607 225 71 0 0 chr4 3000000 3000028 -152630092 - IAPEY3_LTR LTR ERVK -29 303 276 1 607 36514 37 1 7 chr4 3000029 3006162 -152623958 - L1Md_T LINE L1 0 6582 492 2 607 1325 160 139 4 chr4 3006162 3006466 -152623654 - IAPEY3_LTR LTR ERVK -1 364 1 3 607 226 294 0 42 chr4 3007401 3007543 -152622577 + (CACAG)n Simple_repeat Simple_repeat 2 137 0 4 607 282 301 0 43 chr4 3008868 3009052 -152621068 + (CACAG)n Simple_repeat Simple_repeat 2 177 0 5 607 225 316 0 43 chr4 3009600 3009785 -152620335 + (CACAG)n Simple_repeat Simple_repeat 2 178 0 6 607 417 219 140 0 chr4 3013537 3013651 -152616469 + ETnERV2-int LTR ERVK 4267 4396 -3010 7 607 1630 188 38 0 chr4 3013648 3013968 -152616152 + ETnERV2-int LTR ERVK 5151 5482 -1924 7 607 3315 38 5 0 chr4 3014061 3014455 -152615665 - MTA_Mm LTR MaLR 0 396 1 8 75 8433 50 27 1 chr4 3014455 3015525 -152614595 - MTA_Mm-int LTR MaLR 0 1098 1 8 608 1446 45 0 0 chr4 3015525 3015703 -152614417 - MTA_Mm LTR MaLR 0 396 219 8 608 1905 124 254 31 chr4 3015702 3016150 -152613970 - RLTR6_Mm LTR ERV1 -70 584 37 9 608 1686 63 5 0 chr4 3016263 3016485 -152613635 - MTA_Mm LTR MaLR -173 223 1 8 608 375 261 71 57 chr4 3016490 3016701 -152613419 + RMER17D LTR ERVK 331 544 -345 1 608 1502 219 12 19 chr4 3016701 3018331 -152611789 + GSAT_MM Satellite Satellite 1 1618 0 1 608 1088 149 18 36 chr4 3018333 3018556 -152611564 - RLTR45-int LTR ERVK -4123 3121 2903 1 608 974 137 0 0 chr4 3018556 3018702 -152611418 + B1_Mus1 SINE Alu 1 146 -2 1 608 180 0 0 0 chr4 3018702 3018722 -152611398 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 608 10002 53 1 5 chr4 3018722 3020011 -152610109 - MMERVK10C-int LTR ERVK -1767 5814 4532 1 608 496 179 9 35 chr4 3020035 3020151 -152609969 - RLTR45-int LTR ERVK -2376 2468 2356 1 608 2187 139 19 5 chr4 3020155 3020799 -152609321 - ETnERV2-int LTR ERVK -3135 4271 3567 1 608 1036 248 62 21 chr4 3020825 3021113 -152609007 - ETnERV2-int LTR ERVK -4653 2753 2454 1 608 514 179 98 0 chr4 3021126 3021238 -152608882 - RMER16-int LTR ERVK -5077 1060 938 1 608 750 236 20 47 chr4 3021252 3021399 -152608721 - RMER16-int LTR ERVK -4595 811 668 1 608 4190 40 0 0 chr4 3021399 3021897 -152608223 - L1Md_T LINE L1 0 6582 6085 1 608 750 236 20 47 chr4 3021897 3022002 -152608118 - RMER16-int LTR ERVK -4739 667 566 1 608 379 89 0 0 chr4 3022005 3022061 -152608059 + ORR1A1 LTR MaLR 291 346 0 1 608 245 218 0 18 chr4 3022064 3022120 -152608000 + B1_Mur4 SINE Alu 94 148 -2 2 608 28 29 0 0 chr4 3022141 3022176 -152607944 + AT_rich Low_complexity Low_complexity 1 35 0 2 608 570 197 0 0 chr4 3022176 3022293 -152607827 + CT-rich Low_complexity Low_complexity 4 120 0 2 608 10651 144 4 2 chr4 3022297 3024155 -152605965 - L1_Mur1 LINE L1 -156 5730 3869 2 608 2978 120 13 8 chr4 3024155 3024624 -152605496 + RLTR31B_Mm LTR ERVK 1 471 -86 2 608 8028 143 4 63 chr4 3024637 3026354 -152603766 - L1_Mur1 LINE L1 -2011 3875 2261 2 608 1446 59 0 0 chr4 3026661 3026848 -152603272 - L1_Mus1 LINE L1 0 6567 6381 2 608 2965 159 5 7 chr4 3026848 3027423 -152602697 - L1_Mur1 LINE L1 -3613 2273 1700 2 608 596 352 29 51 chr4 3027829 3028140 -152601980 - MTEb LTR MaLR -8 371 68 2 608 414 0 0 0 chr4 3028301 3028347 -152601773 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2 608 459 78 0 0 chr4 3028381 3028445 -152601675 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 608 279 0 0 0 chr4 3028445 3028476 -152601644 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 608 217 161 32 16 chr4 3028630 3028693 -152601427 + (TATG)n Simple_repeat Simple_repeat 4 67 0 3 608 755 200 42 6 chr4 3028797 3028963 -152601157 + B2_Mm2 SINE B2 1 172 -23 3 608 260 344 31 15 chr4 3029374 3029504 -152600616 - ID_B1 SINE B4 -3 221 90 3 608 185 163 0 20 chr4 3029514 3029564 -152600556 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 608 481 270 10 2 chr4 3029577 3029698 -152600422 - B1_Mur2 SINE Alu -8 141 21 3 608 401 321 0 0 chr4 3030251 3030357 -152599763 + B1_Mur2 SINE Alu 2 107 -42 3 608 29 0 0 0 chr4 3030384 3030413 -152599707 + AT_rich Low_complexity Low_complexity 1 29 0 3 608 3005 53 3 3 chr4 3030528 3030907 -152599213 - L1_Mus1 LINE L1 0 6567 6189 3 608 546 16 0 0 chr4 3032321 3032384 -152597736 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 608 299 322 17 11 chr4 3032469 3032645 -152597475 + L1M3 LINE L1 5093 5269 -871 3 608 243 0 0 0 chr4 3033555 3033582 -152596538 + (A)n Simple_repeat Simple_repeat 1 27 0 4 608 358 300 137 46 chr4 3033663 3033904 -152596216 + RMER10A LTR ERVL 1 263 -179 4 608 22 0 0 0 chr4 3033940 3033962 -152596158 + AT_rich Low_complexity Low_complexity 1 22 0 4 608 203 29 88 0 chr4 3033966 3034000 -152596120 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 4 608 324 303 80 6 chr4 3034290 3034466 -152595654 - L1ME3B LINE L1 -383 5857 5669 4 608 330 301 26 59 chr4 3034827 3034979 -152595141 + B3 SINE B2 70 216 0 4 608 4287 128 7 20 chr4 3035097 3035806 -152594314 + Lx3B LINE L1 6270 6969 -4 4 608 278 50 25 0 chr4 3035922 3035962 -152594158 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 608 36374 43 0 4 chr4 3035986 3042429 -152587691 - L1Md_T LINE L1 0 6585 73 4 608 1145 75 7 0 chr4 3042888 3043034 -152587086 + B1_Mus1 SINE Alu 1 147 -1 4 608 3415 165 91 16 chr4 3043502 3044203 -152585917 + RMER6A LTR ERVK 3 756 0 5 608 3936 148 20 17 chr4 3045187 3045813 -152584307 - RMER19A LTR ERVK 0 737 107 5 608 324 0 0 0 chr4 3045813 3045849 -152584271 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 5 608 3936 148 20 17 chr4 3045849 3045881 -152584239 - RMER19A LTR ERVK -631 106 77 5 608 334 247 19 32 chr4 3045881 3046036 -152584084 + Lx9 LINE L1 7491 7643 -1 5 608 297 0 0 0 chr4 3046534 3046567 -152583553 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 608 207 186 0 0 chr4 3046631 3046674 -152583446 + A-rich Low_complexity Low_complexity 3 45 0 5 608 332 193 21 78 chr4 3046684 3046810 -152583310 + RMER17C LTR ERVK 95 214 -196 5 608 477 0 0 0 chr4 3046810 3046863 -152583257 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 5 608 332 193 21 78 chr4 3046863 3046927 -152583193 + RMER17C LTR ERVK 215 274 -136 5 608 15251 122 1 11 chr4 3046952 3050438 -152579682 - L1_Mus1 LINE L1 0 6567 3189 5 608 2289 191 52 10 chr4 3050439 3051032 -152579088 + Lx3B LINE L1 3663 4280 -1597 5 608 6764 138 35 7 chr4 3051031 3053066 -152577054 + Lx3B LINE L1 4824 6926 -47 5 608 13075 146 23 18 chr4 3053058 3055611 -152574509 + Lx LINE L1 3418 6003 -651 6 608 1144 88 0 7 chr4 3055611 3055760 -152574360 + B1_Mus1 SINE Alu 1 148 0 6 608 5590 126 32 85 chr4 3055760 3056466 -152573654 + Lx LINE L1 6004 6646 -8 6 608 3203 184 36 39 chr4 3056463 3057175 -152572945 + Lx4A LINE L1 4610 5319 -558 6 608 1951 223 62 18 chr4 3057179 3057731 -152572389 + RLTR22_Mur LTR ERVK 267 842 -1006 6 608 627 278 77 19 chr4 3057867 3058076 -152572044 + RMER12 LTR ERVK 1100 1320 -2 6 608 338 301 0 58 chr4 3058118 3058238 -152571882 + PB1D9 SINE Alu 5 117 -3 6 608 209 226 0 16 chr4 3058251 3058314 -152571806 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 6 608 418 219 168 16 chr4 3058822 3058947 -152571173 + RLTR11A2 LTR ERVK 13 156 -371 6 608 4957 166 51 1 chr4 3059163 3060043 -152570077 + Lx4A LINE L1 5587 6510 -548 6 608 1112 227 14 46 chr4 3060046 3060392 -152569728 - L1_Mur3 LINE L1 -6505 1207 873 6 608 1427 319 102 18 chr4 3060739 3061466 -152568654 - Lx8 LINE L1 -2 7471 6684 6 608 865 335 54 10 chr4 3061675 3062085 -152568035 - Lx8 LINE L1 -809 6664 6237 6 608 243 146 0 0 chr4 3062286 3062327 -152567793 + (TATG)n Simple_repeat Simple_repeat 3 43 0 7 608 356 317 71 24 chr4 3062553 3062763 -152567357 - RLTR12B LTR ERVK -43 485 266 7 608 468 338 66 29 chr4 3062759 3063000 -152567120 - RLTR12B LTR ERVK -208 320 71 7 608 585 220 34 0 chr4 3063693 3063811 -152566309 - B3 SINE B2 -92 124 3 7 608 1323 282 11 19 chr4 3064627 3064992 -152565128 + Lx5 LINE L1 6686 7047 -3 7 608 426 311 45 40 chr4 3065448 3065689 -152564431 - RLTR12B LTR ERVK -270 258 47 7 608 630 311 71 93 chr4 3065748 3066102 -152564018 + MTEb LTR MaLR 20 365 -14 7 608 704 301 74 17 chr4 3068141 3068591 -152561529 + L1_Rod LINE L1 5344 5766 -81 7 608 875 188 10 86 chr4 3068777 3068975 -152561145 - Lx5 LINE L1 -344 5533 5351 7 608 6908 186 44 14 chr4 3068972 3070448 -152559672 + Lx5 LINE L1 5519 7050 0 7 608 32 67 0 0 chr4 3071229 3071289 -152558831 + AT_rich Low_complexity Low_complexity 1 60 0 7 608 341 221 10 0 chr4 3071302 3071406 -152558714 + CT-rich Low_complexity Low_complexity 4 108 0 7 608 4781 73 35 60 chr4 3072011 3072514 -152557606 + L1_Mus3 LINE L1 5970 6460 -178 8 608 1122 102 0 26 chr4 3072514 3072665 -152557455 - B1_Mus1 SINE Alu 0 148 2 8 608 4781 73 35 60 chr4 3072665 3072847 -152557273 + L1_Mus3 LINE L1 6461 6638 0 8 608 320 330 62 62 chr4 3072865 3073059 -152557061 + RMER10A LTR ERVL 14 207 -235 8 608 216 0 0 0 chr4 3073774 3073798 -152556322 + (T)n Simple_repeat Simple_repeat 1 24 0 8 608 931 50 8 0 chr4 3073798 3073918 -152556202 - B1_Mus1 SINE Alu 0 148 28 8 608 348 24 0 0 chr4 3074150 3074191 -152555929 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 608 429 20 0 0 chr4 3074191 3074240 -152555880 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 608 215 308 0 0 chr4 3074618 3074670 -152555450 + RSINE1 SINE B4 56 107 -58 8 608 305 293 49 0 chr4 3074889 3074970 -152555150 + B3A SINE B2 4 88 -110 8 608 378 259 50 66 chr4 3074970 3075168 -152554952 - RLTR46 LTR ERVK 0 320 126 8 608 330 303 24 39 chr4 3075284 3075411 -152554709 + B3A SINE B2 69 193 -5 8 608 7197 80 17 0 chr4 3075460 3076399 -152553721 - L1_Mus3 LINE L1 0 6638 5684 9 608 1623 138 17 0 chr4 3076398 3076637 -152553483 + L1_Mm LINE L1 5499 5741 -142 9 608 1516 206 34 16 chr4 3077023 3077343 -152552777 - Lx4A LINE L1 -2 7056 6731 9 608 249 227 0 29 chr4 3077318 3077386 -152552734 + Lx4B LINE L1 6660 6725 -333 9 608 211 0 0 81 chr4 3077596 3077633 -152552487 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 9 608 307 306 111 0 chr4 3078592 3078700 -152551420 + MER82 DNA MER2_type 30 149 -504 9 608 417 39 0 0 chr4 3078977 3079028 -152551092 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 9 608 2051 221 68 62 chr4 3080329 3080825 -152549295 - RMER19B LTR ERVK -11 891 393 9 608 337 107 39 26 chr4 3080828 3080905 -152549215 - Lx LINE L1 -65 6589 6512 9 608 241 186 0 33 chr4 3080878 3080939 -152549181 + L1_Mus4 LINE L1 6078 6136 -500 9 608 1616 219 73 6 chr4 3080939 3081101 -152549019 - RMER19B LTR ERVK -480 422 242 9 608 786 22 0 0 chr4 3081101 3081193 -152548927 + (TCTTG)n Simple_repeat Simple_repeat 2 93 0 1 608 1616 228 72 6 chr4 3081193 3081401 -152548719 - RMER19B LTR ERVK -661 241 51 9 608 701 232 0 0 chr4 3081401 3081539 -152548581 - RMER19B LTR ERVK -763 139 2 1 608 250 237 10 51 chr4 3082243 3082341 -152547779 + A-rich Low_complexity Low_complexity 2 95 0 1 608 6464 154 45 2 chr4 3083809 3085467 -152544653 - Lx LINE L1 0 6654 4933 1 608 13186 111 30 6 chr4 3085491 3088336 -152541784 + L1VL2 LINE L1 108 3012 -603 1 608 9714 175 140 6 chr4 3088392 3090561 -152539559 - L1_Mur2 LINE L1 -943 4934 2475 1 608 389 154 11 0 chr4 3090561 3090652 -152539468 + (CTGGGG)n Simple_repeat Simple_repeat 6 97 0 1 608 271 169 0 169 chr4 3090699 3090912 -152539208 + (CTGGGG)n Simple_repeat Simple_repeat 1 177 0 1 608 372 145 0 171 chr4 3090863 3091079 -152539041 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 1 608 402 130 0 165 chr4 3091028 3091240 -152538880 + (CTGGGG)n Simple_repeat Simple_repeat 1 177 0 1 608 351 126 0 169 chr4 3091268 3091440 -152538680 + (CTGGGG)n Simple_repeat Simple_repeat 5 147 0 1 608 382 128 0 173 chr4 3091884 3092092 -152538028 + (CTGGGG)n Simple_repeat Simple_repeat 6 177 0 1 608 270 307 44 94 chr4 3092738 3092918 -152537202 - B2_Mm1t SINE B2 -19 176 6 1 608 192 125 0 0 chr4 3093383 3093415 -152536705 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 608 459 293 31 77 chr4 3093861 3094083 -152536037 - RMER10A LTR ERVL -230 212 1 1 608 516 174 30 24 chr4 3094695 3094860 -152535260 + GA-rich Low_complexity Low_complexity 3 168 0 1 608 256 279 11 34 chr4 3095054 3095143 -152534977 + CT-rich Low_complexity Low_complexity 2 88 0 1 608 671 321 102 23 chr4 3096784 3097354 -152532766 - L1_Mur3 LINE L1 -13 5867 5222 1 608 975 134 158 16 chr4 3097356 3097599 -152532521 - L1_Mus3 LINE L1 0 6638 6422 1 608 400 262 72 19 chr4 3097709 3097898 -152532222 - L1M2 LINE L1 -916 5230 5019 1 608 54 49 0 0 chr4 3098616 3098698 -152531422 + AT_rich Low_complexity Low_complexity 1 82 0 1 608 230 320 30 20 chr4 3098878 3098977 -152531143 + MurSatRep1 Unknown Unknown 162 261 -1876 1 608 723 297 28 92 chr4 3100321 3100647 -152529473 - MTEb LTR MaLR -2 377 73 1 608 534 264 70 119 chr4 3100748 3101237 -152528883 + RLTR12B LTR ERVK 43 507 -61 1 608 375 23 0 0 chr4 3101479 3101523 -152528597 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 608 3580 57 73 20 chr4 3106598 3107049 -152523071 + IAPLTR2_Mm LTR ERVK 1 475 0 1 608 501 17 0 0 chr4 3110136 3110194 -152519926 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 608 495 272 62 127 chr4 3110436 3110933 -152519187 - RLTR12B LTR ERVK -61 507 43 1 608 727 297 28 92 chr4 3111034 3111360 -152518760 + MTEb LTR MaLR 73 377 -2 1 608 267 390 7 21 chr4 3112687 3112831 -152517289 + B1_Mm SINE Alu 6 147 0 1 608 54 49 0 0 chr4 3112981 3113063 -152517057 + AT_rich Low_complexity Low_complexity 1 82 0 1 608 400 256 72 19 chr4 3113782 3113971 -152516149 + L1_Rod LINE L1 5019 5230 -916 1 608 913 126 169 17 chr4 3114081 3114410 -152515710 + L1_Mus3 LINE L1 6422 6638 0 1 608 685 327 81 19 chr4 3114419 3114941 -152515179 + L1_Rod LINE L1 5328 5836 -11 1 608 259 300 10 29 chr4 3116570 3116673 -152513447 + GA-rich Low_complexity Low_complexity 4 104 0 1 608 504 188 30 18 chr4 3116867 3117035 -152513085 + CT-rich Low_complexity Low_complexity 3 172 0 1 608 432 294 36 77 chr4 3117646 3117867 -152512253 + RMER10A LTR ERVL 1 212 -230 1 608 411 21 0 0 chr4 3118322 3118370 -152511750 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 608 254 312 64 75 chr4 3118834 3119007 -152511113 + B2_Mm2 SINE B2 6 176 -19 1 608 21 0 0 0 chr4 3119009 3119030 -152511090 + AT_rich Low_complexity Low_complexity 1 21 0 1 608 348 281 50 66 chr4 3119358 3119556 -152510564 - RLTR46 LTR ERVK 0 320 126 1 608 38151 180 29 18 chr4 3119684 3123156 -152506964 - IAPEY3-int LTR ERVK 0 7680 4112 1 608 185 200 62 124 chr4 3123156 3123253 -152506867 - L3 LINE CR1 -460 4029 3939 1 608 38151 180 29 18 chr4 3123253 3127012 -152503108 - IAPEY3-int LTR ERVK 0 4111 246 1 608 293 244 11 34 chr4 3126997 3127086 -152503034 - IAPLTR3-int LTR ERVK -6375 446 360 1 608 348 281 50 66 chr4 3127351 3127549 -152502571 - RLTR46 LTR ERVK 0 320 126 1 608 400 242 131 36 chr4 3128358 3128495 -152501625 - RMER13A LTR ERVK 0 860 711 1 608 2762 184 41 23 chr4 3128495 3129012 -152501108 + RLTR11A2 LTR ERVK 2 527 0 1 608 371 223 31 62 chr4 3129705 3129834 -152500286 + MYSERV6-int LTR ERVK 6531 6655 -2304 1 608 22 0 0 0 chr4 3130093 3130115 -152500005 + AT_rich Low_complexity Low_complexity 1 22 0 1 608 429 259 8 57 chr4 3130219 3130342 -152499778 + B1_Mur3 SINE Alu 33 149 0 1 608 6852 99 60 9 chr4 3130488 3131537 -152498583 - Lx LINE L1 0 6654 5552 1 608 1714 219 28 80 chr4 3131580 3131626 -152498494 + MYSERV-int LTR ERVK 2 40 -2286 1 608 546 67 0 0 chr4 3131626 3131701 -152498419 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1 608 1714 220 28 80 chr4 3131701 3132202 -152497918 + MYSERV-int LTR ERVK 41 429 -1897 1 608 243 0 0 0 chr4 3132210 3132237 -152497883 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 608 2174 259 46 58 chr4 3132237 3133025 -152497095 + MYSERV-int LTR ERVK 479 1256 -1070 1 608 1951 66 4 0 chr4 3133165 3133421 -152496699 - L1_Mus2 LINE L1 -581 5985 5729 1 608 1893 52 4 25 chr4 3133421 3133660 -152496460 + L1_Mus2 LINE L1 6333 6566 0 1 608 351 273 46 57 chr4 3133660 3133682 -152496438 - L1MB4 LINE L1 -421 5759 5740 1 608 2764 212 107 16 chr4 3133683 3134566 -152495554 + MYSERV-int LTR ERVK 5663 6548 -2 1 608 3176 169 8 9 chr4 3134567 3135094 -152495026 + RLTR11A2 LTR ERVK 1 526 -1 1 608 229 362 124 0 chr4 3135377 3135482 -152494638 + B1_Mus2 SINE Alu 2 119 -1 1 608 25 0 0 0 chr4 3135537 3135562 -152494558 + AT_rich Low_complexity Low_complexity 1 25 0 1 608 381 323 24 0 chr4 3137445 3137569 -152492551 + B1_Mur2 SINE Alu 21 147 -2 1 608 24 85 0 0 chr4 3139107 3139166 -152490954 + AT_rich Low_complexity Low_complexity 1 59 0 1 608 398 233 33 0 chr4 3139454 3139544 -152490576 + B3A SINE B2 1 93 -105 1 608 417 241 18 9 chr4 3140059 3140172 -152489948 - PB1D10 SINE Alu -1 116 11 1 608 3349 88 11 18 chr4 3140554 3140728 -152489392 - L1_Mus3 LINE L1 -16 6622 6452 1 608 5011 148 23 22 chr4 3140728 3141582 -152488538 + RLTR13A LTR ERVK 1 855 0 1 608 3349 88 11 18 chr4 3141582 3141859 -152488261 - L1_Mus3 LINE L1 -187 6451 6174 1 608 412 281 38 34 chr4 3142005 3142247 -152487873 - L1M2 LINE L1 -761 5086 4848 1 608 5866 53 4 0 chr4 3142555 3143240 -152486880 + L1_Mus2 LINE L1 5879 6566 0 1 608 233 200 0 0 chr4 3143415 3143465 -152486655 - RLTR15 LTR ERVK -307 52 3 1 608 232 337 102 0 chr4 3143624 3143722 -152486398 - B3A SINE B2 -33 165 58 1 608 1100 149 35 15 chr4 3144499 3144696 -152485424 + RLTR41 LTR ERV1 246 446 0 1 608 694 277 79 8 chr4 3145052 3145292 -152484828 + MER34A1 LTR ERV1 223 479 -108 1 608 710 125 17 0 chr4 3145298 3145418 -152484702 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 1 609 434 18 18 0 chr4 3145999 3146054 -152484066 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 609 947 205 34 54 chr4 3146081 3146372 -152483748 + RLTRETN_Mm LTR ERVK 124 393 0 1 609 530 79 11 0 chr4 3146385 3146474 -152483646 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 609 1004 284 72 9 chr4 3146587 3146665 -152483455 - Lx6 LINE L1 -26 7434 7345 1 609 225 0 0 0 chr4 3146665 3146690 -152483430 + (TCC)n Simple_repeat Simple_repeat 1 25 0 1 609 1004 284 72 9 chr4 3146690 3146931 -152483189 - Lx6 LINE L1 -116 7344 7097 1 609 1593 186 49 0 chr4 3146977 3147343 -152482777 - L1_Mur2 LINE L1 -4236 1641 1258 1 609 566 214 36 58 chr4 3147635 3147774 -152482346 + B1_Mur2 SINE Alu 2 137 -12 1 609 1546 214 30 7 chr4 3147775 3148080 -152482040 - ORR1D2 LTR MaLR -7 363 52 1 609 465 19 0 0 chr4 3148085 3148139 -152481981 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 609 207 88 0 0 chr4 3148271 3148305 -152481815 + (T)n Simple_repeat Simple_repeat 1 34 0 1 609 742 234 20 14 chr4 3149840 3149987 -152480133 - B1F SINE Alu -1 148 1 1 609 315 266 54 67 chr4 3150316 3150465 -152479655 - BGLII_B LTR ERVK -28 413 267 1 609 286 235 174 4 chr4 3152269 3152374 -152477746 + B1F SINE Alu 1 124 -25 1 609 254 286 71 0 chr4 3152304 3152388 -152477732 + ID_B1 SINE B4 134 223 -1 1 609 245 230 14 0 chr4 3152403 3152477 -152477643 + GA-rich Low_complexity Low_complexity 2 76 0 1 609 248 278 0 0 chr4 3152575 3152629 -152477491 - MER90a LTR ERV1 0 614 561 1 609 691 261 82 55 chr4 3152820 3153112 -152477008 + MER44A DNA MER2_type 5 304 -35 1 609 515 284 67 11 chr4 3153122 3153424 -152476696 - MER90a LTR ERV1 -259 316 1 1 609 537 272 157 55 chr4 3153773 3154116 -152476004 - MLT1B LTR MaLR -12 378 1 1 609 496 256 72 36 chr4 3154195 3154361 -152475759 + MLT1B LTR MaLR 219 390 0 1 609 350 132 19 0 chr4 3154416 3154469 -152475651 + B1_Mus2 SINE Alu 86 139 -8 1 609 465 19 0 0 chr4 3154469 3154523 -152475597 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 609 340 273 136 24 chr4 3154529 3154698 -152475422 + L1M4 LINE L1 3484 3671 -2475 1 609 1243 110 6 0 chr4 3154720 3154902 -152475218 - B2_Mm1t SINE B2 -1 192 10 1 609 453 19 0 0 chr4 3154927 3154981 -152475139 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 1 609 258 125 0 147 chr4 3155305 3155380 -152474740 + B1_Mus2 SINE Alu 42 105 -42 1 609 239 207 0 33 chr4 3155455 3155515 -152474605 + B1_Mus2 SINE Alu 45 102 -45 1 609 420 20 0 0 chr4 3155515 3155564 -152474556 + (CAGA)n Simple_repeat Simple_repeat 3 51 0 1 609 211 211 25 101 chr4 3155564 3155582 -152474538 + B1F2 SINE Alu 105 117 -32 1 609 237 183 0 91 chr4 3155725 3155791 -152474329 + B1_Mus2 SINE Alu 42 101 -46 1 609 270 0 0 0 chr4 3155791 3155821 -152474299 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 609 310 271 40 99 chr4 3156164 3156338 -152473782 + LTR16C LTR ERVL 345 535 -3 1 609 411 302 52 0 chr4 3157358 3157474 -152472646 + RSINE1 SINE B4 42 163 -2 2 609 804 209 44 97 chr4 3157523 3157751 -152472369 + B3 SINE B2 1 216 0 2 609 186 43 0 0 chr4 3157847 3157870 -152472250 + (A)n Simple_repeat Simple_repeat 1 23 0 2 609 24 32 0 0 chr4 3158005 3158036 -152472084 + AT_rich Low_complexity Low_complexity 1 31 0 2 609 498 159 0 0 chr4 3158406 3158494 -152471626 + C-rich Low_complexity Low_complexity 93 180 0 2 609 205 222 37 0 chr4 3158572 3158626 -152471494 + C-rich Low_complexity Low_complexity 2 57 0 2 609 1222 74 99 0 chr4 3159789 3159951 -152470169 + B2_Mm1t SINE B2 2 179 -14 2 609 497 16 16 0 chr4 3159951 3160013 -152470107 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 2 609 2868 129 5 0 chr4 3160446 3160880 -152469240 + L1_Mur2 LINE L1 4014 4449 -1428 2 609 4470 176 27 11 chr4 3160881 3161814 -152468306 - RLTR13A LTR ERVK 0 958 11 2 609 8446 146 13 7 chr4 3161822 3163999 -152466121 + Lx LINE L1 4450 6644 -10 2 609 898 74 22 0 chr4 3163999 3164134 -152465986 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 2 609 536 224 9 9 chr4 3164244 3164352 -152465768 - PB1D10 SINE Alu -9 108 1 2 609 226 227 173 0 chr4 3164358 3164468 -152465652 - L1MC LINE L1 -820 5326 5198 2 609 1837 151 3 3 chr4 3164523 3164808 -152465312 + ORR1B2 LTR MaLR 75 359 -8 2 609 255 103 0 0 chr4 3164812 3164851 -152465269 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 2 609 638 232 71 21 chr4 3165069 3165210 -152464910 + B1_Mur1 SINE Alu 2 149 0 2 609 315 319 85 0 chr4 3165367 3165461 -152464659 + B1F2 SINE Alu 22 123 -26 2 609 772 201 34 22 chr4 3166068 3166256 -152463864 + B3 SINE B2 2 193 -2 2 609 787 184 20 0 chr4 3166259 3166406 -152463714 + B1_Mur4 SINE Alu 1 150 0 2 609 607 250 36 7 chr4 3166721 3166858 -152463262 - B1_Mur4 SINE Alu -8 142 2 2 609 669 227 153 21 chr4 3168558 3168747 -152461373 - B3 SINE B2 0 216 3 2 609 633 317 27 0 chr4 3169830 3170016 -152460104 - ID_B1 SINE B4 -33 191 1 2 609 1028 183 38 34 chr4 3170071 3170280 -152459840 + B3 SINE B2 1 210 -6 2 609 677 173 102 0 chr4 3170582 3170709 -152459411 - B1_Mus2 SINE Alu -7 140 1 2 609 14450 88 5 2 chr4 3170820 3173504 -152456616 - L1_Mus1 LINE L1 0 6567 3876 2 609 3340 107 0 0 chr4 3173492 3173961 -152456159 + L1_Mm LINE L1 2413 2881 -3002 2 609 811 163 227 23 chr4 3174123 3174299 -152455821 - B3 SINE B2 0 216 5 2 609 254 284 51 31 chr4 3174842 3174940 -152455180 - B4 SINE B4 -191 101 2 2 609 384 40 0 0 chr4 3176264 3176314 -152453806 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 609 259 162 0 43 chr4 3176314 3176420 -152453700 + A-rich Low_complexity Low_complexity 13 113 0 2 609 1076 111 0 27 chr4 3176495 3176643 -152453477 + B1_Mus2 SINE Alu 3 146 -1 2 609 182 91 0 29 chr4 3176643 3176677 -152453443 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 609 185 0 40 0 chr4 3176880 3176905 -152453215 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 609 1204 41 20 27 chr4 3176911 3177061 -152453059 - B1_Mur4 SINE Alu 0 150 2 2 609 327 155 82 27 chr4 3177062 3177135 -152452985 - RMER3D-int LTR ERVK -1740 1102 1026 2 609 516 232 83 83 chr4 3177460 3177690 -152452430 - RMER3D-int LTR ERVK -2543 299 70 2 609 26 0 0 0 chr4 3178855 3178881 -152451239 + AT_rich Low_complexity Low_complexity 1 26 0 2 609 410 309 175 11 chr4 3179525 3179702 -152450418 - ID_B1 SINE B4 -18 206 1 2 609 2075 150 3 10 chr4 3179785 3180095 -152450025 - RLTR10E LTR ERVK -3 308 1 2 609 16084 86 7 35 chr4 3180126 3182358 -152447762 - MMERVK10C-int LTR ERVK 0 7581 5414 2 609 5128 106 4 1 chr4 3182359 3183066 -152447054 - MMERVK10C-int LTR ERVK -6029 1552 844 2 609 3710 187 55 43 chr4 3183062 3183985 -152446135 - MMERVK10C-int LTR ERVK -6657 924 1 2 609 1935 171 3 13 chr4 3183985 3184299 -152445821 - RLTR10E LTR ERVK 0 311 1 2 609 286 169 143 22 chr4 3184299 3184311 -152445809 - RLTR10E LTR ERVK -1449 21 6 2 609 468 264 59 44 chr4 3184937 3185072 -152445048 + ID_B1 SINE B4 76 212 -12 2 609 212 163 0 0 chr4 3185343 3185386 -152444734 + A-rich Low_complexity Low_complexity 1 43 0 2 609 204 135 0 0 chr4 3185605 3185642 -152444478 + (C)n Simple_repeat Simple_repeat 1 37 0 2 609 2220 83 33 3 chr4 3186493 3186794 -152443326 - L1_Mus3 LINE L1 -6 6632 6323 2 609 2651 117 43 98 chr4 3187209 3187719 -152442401 - RLTR45 LTR ERVK 0 482 1 2 609 22 0 0 0 chr4 3188808 3188830 -152441290 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 207 0 0 0 chr4 3188973 3188996 -152441124 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 609 260 268 28 14 chr4 3189298 3189370 -152440750 + ID4 SINE ID 3 75 -8 2 609 317 62 21 0 chr4 3189478 3189526 -152440594 + (TTATA)n Simple_repeat Simple_repeat 4 52 0 2 609 2261 172 36 8 chr4 3190278 3190670 -152439450 - MTC LTR MaLR -10 411 9 2 609 4311 146 22 37 chr4 3190677 3191431 -152438689 + RLTR14-int LTR ERV1 3797 4539 -778 2 609 2898 109 12 0 chr4 3191430 3191833 -152438287 + MurERV4_19-int LTR ERVK 1852 2259 -3521 2 609 274 327 28 42 chr4 3192032 3192246 -152437874 + RMER5 LTR ERV1 273 483 -51 2 609 435 309 40 0 chr4 3192252 3192378 -152437742 + ORR1E LTR MaLR 3 133 -226 2 609 263 140 0 20 chr4 3192388 3192439 -152437681 + GA-rich Low_complexity Low_complexity 6 55 0 2 609 1063 192 5 18 chr4 3192439 3192656 -152437464 + RLTR14-int LTR ERV1 5101 5314 -3 2 609 1908 219 16 3 chr4 3192678 3193054 -152437066 + RLTR14 LTR ERV1 2 382 0 2 609 207 69 0 0 chr4 3193247 3193276 -152436844 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 609 1032 103 7 0 chr4 3193276 3193412 -152436708 - B1_Mus2 SINE Alu -10 137 1 2 609 2006 208 133 45 chr4 3193432 3194121 -152435999 - L1_Rod LINE L1 -3645 2202 1449 2 609 396 0 0 0 chr4 3194121 3194165 -152435955 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 609 2006 208 133 45 chr4 3194165 3194202 -152435918 - L1_Rod LINE L1 -4399 1448 1413 2 609 1155 92 0 0 chr4 3194243 3194385 -152435735 - B1_Mus1 SINE Alu -6 142 1 2 609 255 210 16 0 chr4 3194390 3194452 -152435668 + ORR1E LTR MaLR 329 391 -28 2 609 1568 251 30 13 chr4 3195253 3195648 -152434472 - Lx5 LINE L1 -1 7049 6648 2 609 644 142 38 0 chr4 3195649 3195755 -152434365 + RLTR11A LTR ERVK 3 112 -416 2 609 602 211 12 42 chr4 3196018 3196186 -152433934 + RNLTR23 LTR ERVK 480 642 0 2 609 2237 152 27 10 chr4 3196186 3196598 -152433522 + RLTR11A LTR ERVK 107 525 -3 2 609 1361 37 17 22 chr4 3196812 3197171 -152432949 + (TCTCCC)n Simple_repeat Simple_repeat 1 356 0 2 609 1197 82 7 0 chr4 3197187 3197334 -152432786 - B1_Mus1 SINE Alu 0 148 1 2 609 661 320 96 9 chr4 3198602 3198670 -152431450 + Lx8 LINE L1 6100 6177 -1296 2 609 509 0 0 16 chr4 3198670 3198732 -152431388 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 609 661 320 96 9 chr4 3198732 3199007 -152431113 + Lx8 LINE L1 6178 6472 -1001 2 609 1067 95 0 0 chr4 3199100 3199247 -152430873 + B2_Mm2 SINE B2 2 148 -47 2 609 396 0 0 0 chr4 3199251 3199295 -152430825 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 609 693 218 21 14 chr4 3199487 3199631 -152430489 + B1_Mur4 SINE Alu 6 150 0 2 609 274 305 45 90 chr4 3199492 3199647 -152430473 + B4 SINE B4 95 242 -50 2 609 196 149 0 41 chr4 3199655 3199704 -152430416 + GA-rich Low_complexity Low_complexity 3 49 0 2 609 726 246 137 59 chr4 3199760 3200015 -152430105 + B4A SINE B4 2 276 -16 2 609 420 311 40 7 chr4 3200047 3200199 -152429921 - MIR SINE MIR -59 203 47 2 609 600 14 0 0 chr4 3200294 3200363 -152429757 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2 609 1115 215 94 16 chr4 3200980 3201235 -152428885 + MTEb LTR MaLR 1 275 -104 2 609 2787 178 4 4 chr4 3201245 3201725 -152428395 + RMER15 LTR ERVL 6 485 -90 2 609 280 342 0 13 chr4 3201730 3201807 -152428313 - MER45R DNA Tip100 -1503 78 3 2 609 236 299 184 24 chr4 3202019 3202187 -152427933 + RLTR9A LTR ERVK 1 195 -173 2 609 312 163 0 0 chr4 3202259 3202345 -152427775 + T-rich Low_complexity Low_complexity 3 88 0 2 609 1159 96 7 0 chr4 3202348 3202494 -152427626 - B1_Mus1 SINE Alu 0 148 2 2 609 476 191 32 73 chr4 3202494 3202618 -152427502 + RLTR9A LTR ERVK 250 368 0 2 609 450 288 70 127 chr4 3202649 3202910 -152427210 + MLT1E2 LTR MaLR 50 361 -293 2 609 252 0 0 0 chr4 3203059 3203087 -152427033 + (A)n Simple_repeat Simple_repeat 1 28 0 2 609 2773 113 20 41 chr4 3203450 3203962 -152426158 + RLTR1D LTR ERV1 1 589 -16 2 609 1469 178 58 13 chr4 3204133 3204441 -152425679 + RLTR11A2 LTR ERVK 206 527 0 2 609 335 106 70 12 chr4 3204546 3204632 -152425488 + CT-rich Low_complexity Low_complexity 1 91 0 2 609 729 219 0 15 chr4 3204910 3205040 -152425080 + B1_Mur3 SINE Alu 1 128 -21 2 609 217 100 40 0 chr4 3205663 3205713 -152424407 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 2 609 182 132 105 0 chr4 3206181 3206219 -152423901 + L2 LINE L2 2835 2876 -543 2 609 537 16 0 0 chr4 3207457 3207519 -152422601 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 2 609 224 260 0 0 chr4 3207941 3207991 -152422129 + C-rich Low_complexity Low_complexity 2 51 0 2 609 17300 67 8 1 chr4 3208385 3211313 -152418807 - L1Md_F2 LINE L1 0 6582 3632 2 609 4827 88 1 3 chr4 3211308 3211807 -152418313 - L1Md_F2 LINE L1 -4258 1625 1139 2 609 1741 37 0 0 chr4 3211807 3211998 -152418122 - B2_Mm1t SINE B2 -2 191 1 2 609 4827 171 7 21 chr4 3211998 3212691 -152417429 - L1Md_F2 LINE L1 -5586 1138 446 2 609 421 261 36 9 chr4 3212880 3212992 -152417128 - B1_Mur1 SINE Alu -24 125 11 2 609 239 314 48 56 chr4 3212884 3213009 -152417111 - ID_B1 SINE B4 -25 199 76 2 609 191 36 36 0 chr4 3214795 3214823 -152415297 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 609 22 35 0 0 chr4 3215016 3215045 -152415075 + AT_rich Low_complexity Low_complexity 1 29 0 2 609 372 256 0 11 chr4 3215162 3215249 -152414871 + RSINE1 SINE B4 68 153 -12 2 609 206 219 171 40 chr4 3216873 3216996 -152413124 - MIR3 SINE MIR -123 145 8 2 609 243 0 0 0 chr4 3217369 3217396 -152412724 + (T)n Simple_repeat Simple_repeat 1 27 0 3 609 1946 206 56 11 chr4 3217519 3217981 -152412139 - Lx4B LINE L1 -2 7056 6574 3 609 1163 97 0 0 chr4 3217991 3218136 -152411984 - B1_Mus2 SINE Alu -2 145 1 3 609 6941 77 25 3 chr4 3218263 3219137 -152410983 + RLTR13B1 LTR ERVK 1 893 0 3 609 10593 94 7 10 chr4 3219673 3221924 -152408196 - L1_Mus1 LINE L1 0 6567 4329 3 609 2028 204 56 13 chr4 3222075 3222538 -152407582 - Lx4B LINE L1 -2 7056 6574 3 609 1084 130 0 12 chr4 3223297 3223468 -152406652 - B2_Mm2 SINE B2 -26 169 1 3 609 238 204 0 0 chr4 3224268 3224312 -152405808 + MIRc SINE MIR 96 139 -129 3 609 235 250 38 50 chr4 3225899 3225979 -152404141 + ID4 SINE ID 2 80 -3 3 609 1634 257 54 20 chr4 3226102 3226550 -152403570 + Lx6 LINE L1 6968 7430 -30 3 609 642 161 145 0 chr4 3227138 3227262 -152402858 + B1_Mus1 SINE Alu 5 146 -2 3 609 711 0 0 0 chr4 3227262 3227341 -152402779 + (GGGAA)n Simple_repeat Simple_repeat 2 80 0 3 609 1134 120 0 0 chr4 3227341 3227516 -152402604 + (AGGGGG)n Simple_repeat Simple_repeat 4 178 0 3 609 473 188 45 34 chr4 3227531 3227707 -152402413 + GA-rich Low_complexity Low_complexity 3 180 0 3 609 380 153 106 0 chr4 3227718 3227803 -152402317 + B3A SINE B2 1 94 -104 3 609 7013 63 25 0 chr4 3227820 3228689 -152401431 - L1_Mus1 LINE L1 0 6567 5677 3 609 394 286 9 0 chr4 3228689 3228802 -152401318 + B3 SINE B2 97 208 -8 3 609 248 273 140 10 chr4 3228875 3228975 -152401145 + PB1D10 SINE Alu 4 116 -1 3 609 729 251 16 0 chr4 3229384 3229567 -152400553 + B3 SINE B2 1 186 -30 3 609 810 243 162 44 chr4 3230616 3230887 -152399233 + Lx8 LINE L1 7171 7473 0 3 609 354 263 21 21 chr4 3231530 3231627 -152398493 - B1F SINE Alu -39 110 14 3 609 5282 51 0 0 chr4 3231899 3232575 -152397545 + L1Md_F2 LINE L1 5934 6582 0 3 609 30003 52 2 1 chr4 3233147 3237586 -152392534 - L1Md_F3 LINE L1 0 6584 2140 3 609 2792 75 0 3 chr4 3237586 3237949 -152392171 + L1_Mus1 LINE L1 6206 6567 0 3 609 628 226 218 34 chr4 3238371 3238752 -152391368 + L1MB2 LINE L1 5620 6070 -101 3 609 2237 104 224 44 chr4 3239202 3239684 -152390436 + RLTR6_Mm LTR ERV1 37 605 -49 3 609 6417 17 34 0 chr4 3239684 3240723 -152389397 + RLTR6-int LTR ERV1 1 1150 -6628 3 609 35472 15 5 1 chr4 3240733 3244646 -152385474 + RLTR6-int LTR ERV1 3851 7778 0 3 609 2123 104 235 43 chr4 3244755 3245215 -152384905 + RLTR6_Mm LTR ERV1 37 584 -70 3 609 235 300 200 0 chr4 3245238 3245318 -152384802 - PB1D10 SINE Alu -21 96 1 3 609 236 155 42 14 chr4 3245486 3245558 -152384562 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 609 871 157 0 0 chr4 3246363 3246497 -152383623 - B1_Mus2 SINE Alu -13 134 1 3 609 231 114 0 0 chr4 3246632 3246667 -152383453 - URR1B DNA MER1_type 0 225 191 3 609 463 312 44 40 chr4 3246676 3247113 -152383007 + RLTR15 LTR ERVK 10 317 -42 3 609 649 164 176 36 chr4 3247140 3247305 -152382815 - URR1B DNA MER1_type -37 188 1 3 609 373 251 100 27 chr4 3247468 3247620 -152382500 - RSINE1 SINE B4 0 165 2 3 609 241 308 58 33 chr4 3248728 3248849 -152381271 - MTEb LTR MaLR -4 375 252 3 609 792 247 150 40 chr4 3248910 3249184 -152380936 - MTEa-int LTR MaLR -34 1546 1243 3 609 1454 321 112 72 chr4 3249187 3250201 -152379919 - MTEa-int LTR MaLR -524 1056 2 3 609 401 282 55 6 chr4 3250201 3250364 -152379756 - MTEa LTR MaLR -16 403 243 3 609 12450 54 6 5 chr4 3250614 3252846 -152377274 - L1Md_F2 LINE L1 -1 6581 4348 3 609 195 42 0 0 chr4 3253007 3253031 -152377089 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 609 7881 66 5 1 chr4 3253128 3254155 -152375965 - L1_Mus1 LINE L1 -1 6653 5544 3 609 180 111 0 0 chr4 3257373 3257400 -152372720 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 609 2841 48 0 0 chr4 3257684 3258016 -152372104 - IAPEY3_LTR LTR ERVK 0 332 1 3 609 58950 64 14 5 chr4 3258016 3265631 -152364489 - IAPEY3-int LTR ERVK 0 7680 1 3 609 2904 45 0 0 chr4 3265631 3265963 -152364157 - IAPEY3_LTR LTR ERVK 0 332 1 3 609 214 272 95 19 chr4 3266158 3266263 -152363857 - MIRm SINE MIR -3 273 161 3 609 266 294 93 78 chr4 3269480 3269879 -152360241 + RMER1C Other Other 413 817 -525 3 609 200 196 118 0 chr4 3270789 3270840 -152359280 + L2b LINE L2 3312 3368 -7 3 609 282 29 0 0 chr4 3271277 3271312 -152358808 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 609 520 225 315 12 chr4 3271454 3271616 -152358504 + B3 SINE B2 2 212 -4 3 609 468 0 0 0 chr4 3272163 3272215 -152357905 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 609 21 0 0 0 chr4 3273353 3273374 -152356746 + AT_rich Low_complexity Low_complexity 1 21 0 3 76 31739 82 6 0 chr4 3273745 3280351 -152349769 - L1Md_F2 LINE L1 0 6582 98 3 610 588 208 111 37 chr4 3280396 3280531 -152349589 - B1_Mur1 SINE Alu 0 149 5 3 610 935 107 11 0 chr4 3280590 3280767 -152349353 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 610 491 290 23 15 chr4 3281113 3281246 -152348874 - RSINE1 SINE B4 -21 144 11 3 610 992 189 27 0 chr4 3281697 3281882 -152348238 - B2_Mm2 SINE B2 -5 190 1 3 610 234 300 0 0 chr4 3282090 3282150 -152347970 + ID4_ SINE ID 1 60 -23 3 610 316 248 0 10 chr4 3282234 3282336 -152347784 + B4A SINE B4 192 292 0 3 610 223 182 13 13 chr4 3282336 3282414 -152347706 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 610 1324 66 33 3 chr4 3282970 3283292 -152346828 - RLTR1B LTR ERV1 -112 400 1 3 610 63676 49 4 6 chr4 3283292 3290862 -152339258 - MMERGLN-int LTR ERV1 0 7556 1 3 610 3074 76 177 2 chr4 3290862 3291298 -152338822 - RLTR1B LTR ERV1 0 512 1 3 610 5412 57 3 6 chr4 3291300 3291975 -152338145 - ETnERV2-int LTR ERVK -6199 1207 535 3 610 634 24 48 0 chr4 3291975 3292059 -152338061 - RLTR13B1 LTR ERVK -299 594 507 3 610 776 311 53 53 chr4 3292075 3292544 -152337576 - RNERVK23-int LTR ERVK -620 7597 7129 3 610 5551 87 4 21 chr4 3292633 3293393 -152336727 - RLTR45-int LTR ERVK -5596 1648 902 3 610 1875 41 0 0 chr4 3293502 3293721 -152336399 - RLTR45-int LTR ERVK -6334 910 692 3 610 5301 53 19 33 chr4 3294076 3294748 -152335372 - RLTR45-int LTR ERVK -6552 692 30 3 610 3237 55 25 0 chr4 3294748 3295149 -152334971 + RLTR10A LTR ERVK 1 411 0 3 610 5301 53 19 33 chr4 3295149 3295178 -152334942 - RLTR45-int LTR ERVK -7215 29 1 3 610 1885 117 294 42 chr4 3295178 3295563 -152334557 - RLTR45 LTR ERVK 0 482 1 3 610 236 250 28 94 chr4 3296391 3296497 -152333623 - MIR SINE MIR -116 146 48 3 610 1675 26 5 0 chr4 3297184 3297375 -152332745 - B2_Mm1a SINE B2 0 193 2 3 610 289 366 0 11 chr4 3298685 3298786 -152331334 - PB1D7 SINE Alu -6 114 15 3 610 229 191 0 0 chr4 3299289 3299331 -152330789 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 610 288 70 0 0 chr4 3299358 3299401 -152330719 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 3 610 536 221 35 0 chr4 3299428 3299541 -152330579 - RSINE1 SINE B4 -46 119 3 3 610 4505 12 2 0 chr4 3301133 3301625 -152328495 + MT2_Mm LTR ERVL 1 493 0 3 610 41388 16 14 0 chr4 3301625 3306912 -152323208 + MERVL-int LTR ERVL 1 5360 -125 3 610 362 167 46 35 chr4 3306912 3306999 -152323121 + ORR1A3-int LTR MaLR 553 640 -1323 3 610 303 53 0 0 chr4 3306999 3307037 -152323083 + MERVL-int LTR ERVL 5448 5485 0 3 610 4486 14 2 0 chr4 3307037 3307529 -152322591 + MT2_Mm LTR ERVL 1 493 0 3 610 605 233 8 0 chr4 3308393 3308522 -152321598 - B1_Mur3 SINE Alu -9 140 11 3 610 200 86 29 0 chr4 3308819 3308854 -152321266 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 610 23 33 0 0 chr4 3309262 3309292 -152320828 + AT_rich Low_complexity Low_complexity 1 30 0 3 610 201 74 0 0 chr4 3309595 3309622 -152320498 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 610 25 0 0 0 chr4 3309715 3309740 -152320380 + AT_rich Low_complexity Low_complexity 1 25 0 3 610 444 57 36 54 chr4 3309883 3309994 -152320126 + (GAGAA)n Simple_repeat Simple_repeat 3 111 0 3 610 243 227 133 0 chr4 3310079 3310154 -152319966 + B3A SINE B2 72 156 -42 3 610 429 81 0 0 chr4 3310261 3310323 -152319797 + (TGG)n Simple_repeat Simple_repeat 3 64 0 3 610 190 42 0 0 chr4 3310937 3310961 -152319159 + L2b LINE L2 3334 3357 -18 3 610 342 0 0 0 chr4 3311385 3311423 -152318697 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 610 252 0 0 0 chr4 3311423 3311450 -152318670 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 610 297 0 0 0 chr4 3311450 3311482 -152318638 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 610 531 171 0 0 chr4 3311994 3312099 -152318021 + GA-rich Low_complexity Low_complexity 2 106 0 3 610 192 200 0 0 chr4 3312805 3312855 -152317265 + CT-rich Low_complexity Low_complexity 1 50 0 3 610 222 289 26 13 chr4 3312974 3313051 -152317069 - MER5A DNA MER1_type -110 79 2 3 610 4154 19 28 0 chr4 3313517 3313986 -152316134 - LTRIS_Mm LTR ERV1 0 482 1 3 610 307 281 0 24 chr4 3316102 3316186 -152313934 - L1MEg LINE L1 -4138 1946 1865 3 610 268 211 23 20 chr4 3316290 3316397 -152313723 + PB1D9 SINE Alu 23 132 -17 3 610 303 242 193 73 chr4 3316783 3316975 -152313145 - B3 SINE B2 -1 215 1 3 610 2739 138 26 9 chr4 3317325 3317780 -152312340 - L1_Mus4 LINE L1 0 6636 6174 3 610 585 86 0 0 chr4 3317791 3317884 -152312236 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 610 271 322 58 0 chr4 3317972 3318059 -152312061 + RSINE1 SINE B4 36 127 -38 3 610 2866 181 21 2 chr4 3318362 3318931 -152311189 + L1_Mur2 LINE L1 3100 3679 -2198 3 610 1433 195 42 25 chr4 3318960 3319313 -152310807 + RLTR10D LTR ERVK 1 359 0 3 610 690 215 30 15 chr4 3319719 3319851 -152310269 + ETnERV2-int LTR ERVK 7059 7192 -214 3 610 6689 113 40 8 chr4 3320650 3321053 -152309067 - L1_Mus4 LINE L1 -2 6634 6230 3 610 1610 152 166 17 chr4 3321053 3321409 -152308711 + RLTR9E LTR ERVK 1 409 0 3 610 10018 143 15 30 chr4 3321409 3323571 -152306549 - L1_Mus4 LINE L1 -407 6229 4098 3 610 2742 127 2 9 chr4 3323553 3324006 -152306114 - L1VL4 LINE L1 -5314 988 539 3 610 16322 57 365 0 chr4 3324015 3327213 -152302907 + L1Md_F2 LINE L1 1689 6185 -397 3 610 1911 123 21 17 chr4 3327214 3327591 -152302529 - RLTR10A LTR ERVK -2 388 1 3 610 3011 64 18 13 chr4 3327592 3327990 -152302130 + L1Md_F2 LINE L1 6183 6582 0 3 610 2576 78 8 16 chr4 3328002 3328368 -152301752 + RLTR45-int LTR ERVK 5709 6071 -1173 4 610 1745 133 0 4 chr4 3328382 3328639 -152301481 + ETnERV3-int LTR ERVK 5529 5784 -24 4 610 3585 149 52 54 chr4 3328649 3329725 -152300395 + RLTR13D1 LTR ERVK 1 965 -58 4 610 263 250 69 25 chr4 3329797 3329916 -152300204 + MIRc SINE MIR 14 151 -125 4 610 2630 200 49 29 chr4 3329999 3330592 -152299528 + RLTR1D LTR ERV1 1 605 0 4 610 3972 209 80 36 chr4 3331027 3331795 -152298325 + Lx7 LINE L1 154 965 -6763 4 610 1098 160 65 14 chr4 3331795 3332010 -152298110 - URR1A DNA MER1_type 0 226 1 4 610 3972 209 80 36 chr4 3332010 3332275 -152297845 + Lx7 LINE L1 966 1233 -6495 4 610 1932 98 3 17 chr4 3332278 3332568 -152297552 - Lx2B LINE L1 -4 6996 6711 4 610 2634 113 5 13 chr4 3332568 3332955 -152297165 + Lx2B LINE L1 6318 6701 -299 4 610 5975 196 37 87 chr4 3332949 3334349 -152295771 + Lx7 LINE L1 6365 7694 -2 4 610 221 297 13 13 chr4 3335034 3335109 -152295011 - MIRc SINE MIR -115 153 79 4 610 277 165 67 19 chr4 3335410 3335515 -152294605 + (TA)n Simple_repeat Simple_repeat 1 110 0 4 610 207 0 0 0 chr4 3337943 3337966 -152292154 + (A)n Simple_repeat Simple_repeat 1 23 0 4 610 266 306 0 0 chr4 3338439 3338501 -152291619 + ID4_ SINE ID 3 64 -19 4 610 323 192 14 0 chr4 3338995 3339068 -152291052 + GA-rich Low_complexity Low_complexity 4 77 0 4 610 914 131 23 0 chr4 3339068 3339165 -152290955 + polypurine Low_complexity Low_complexity 1 101 0 4 610 1494 33 0 0 chr4 3339165 3339345 -152290775 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 610 914 131 23 0 chr4 3339345 3339422 -152290698 + polypurine Low_complexity Low_complexity 102 178 0 4 610 193 119 48 0 chr4 3339424 3339466 -152290654 + GA-rich Low_complexity Low_complexity 4 47 0 4 610 3254 56 2 10 chr4 3340177 3340591 -152289529 - L1Md_F2 LINE L1 0 6582 6172 4 610 368 220 76 0 chr4 3342380 3342483 -152287637 - PB1D10 SINE Alu -5 122 3 4 610 352 290 47 0 chr4 3342889 3342996 -152287124 + MER44D DNA MER2_type 2 113 -592 4 610 308 178 44 0 chr4 3342989 3343079 -152287041 + MER44D DNA MER2_type 514 607 -98 4 610 191 88 0 29 chr4 3343429 3343464 -152286656 + (TTTTTG)n Simple_repeat Simple_repeat 5 38 0 4 610 447 206 0 0 chr4 3343672 3343745 -152286375 + polypurine Low_complexity Low_complexity 3 75 0 4 610 661 69 29 10 chr4 3343745 3343848 -152286272 + (GGAAA)n Simple_repeat Simple_repeat 5 109 0 4 610 2805 92 8 8 chr4 3344126 3344519 -152285601 - MTA_Mm LTR MaLR -1 395 3 4 610 3200 104 82 7 chr4 3344521 3345073 -152285047 - MTA_Mm-int LTR MaLR 0 1098 506 4 610 3726 62 8 2 chr4 3345164 3345684 -152284436 + MT-int LTR MaLR 190 712 -386 4 610 2715 99 20 0 chr4 3345686 3346078 -152284042 + MTB LTR MaLR 1 400 0 4 610 573 227 6 17 chr4 3346294 3346473 -152283647 + CT-rich Low_complexity Low_complexity 3 179 0 4 610 412 283 107 150 chr4 3346590 3346823 -152283297 + B4 SINE B4 2 224 -68 4 610 203 61 30 0 chr4 3347752 3347785 -152282335 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 610 227 273 39 13 chr4 3347824 3347902 -152282218 + B4 SINE B4 144 223 -69 4 610 426 79 0 0 chr4 3348057 3348120 -152282000 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 610 307 293 30 10 chr4 3348396 3348496 -152281624 + B1F1 SINE Alu 1 102 -47 4 610 246 305 102 19 chr4 3350835 3350992 -152279128 + L1_Mur3 LINE L1 3347 3517 -2363 4 610 1360 93 11 0 chr4 3350997 3351179 -152278941 - B2_Mm1t SINE B2 -8 185 2 4 610 194 81 27 0 chr4 3351179 3351216 -152278904 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 610 1156 68 7 0 chr4 3351225 3351371 -152278749 - B1_Mus2 SINE Alu 0 147 1 4 610 978 286 87 58 chr4 3351418 3351983 -152278137 + L1MA4 LINE L1 3601 4181 -1959 4 610 295 268 196 23 chr4 3352088 3352514 -152277606 + L1MA4 LINE L1 5357 5870 -430 4 610 360 0 0 0 chr4 3353134 3353174 -152276946 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 610 470 223 28 37 chr4 3353180 3353287 -152276833 - B1F SINE Alu -43 106 1 4 610 1096 102 23 0 chr4 3353981 3354157 -152275963 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 4 610 243 0 0 0 chr4 3354157 3354184 -152275936 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 4 610 524 308 45 25 chr4 3354219 3354419 -152275701 - B4A SINE B4 -88 204 1 4 610 297 128 0 0 chr4 3354454 3354501 -152275619 - Lx8 LINE L1 -3 7470 7424 4 610 312 218 0 0 chr4 3354621 3354676 -152275444 - PB1D9 SINE Alu -45 75 21 4 610 233 333 30 20 chr4 3354682 3354783 -152275337 - PB1D7 SINE Alu -18 102 1 4 610 240 216 68 58 chr4 3355164 3355267 -152274853 - B1F SINE Alu 0 149 46 4 610 1153 166 42 73 chr4 3355436 3355722 -152274398 - RLTR23 LTR ERV1 0 430 154 4 610 325 328 26 36 chr4 3355726 3355919 -152274201 - MuRRS4-int LTR ERV1 -3618 1445 1255 4 610 2248 219 113 78 chr4 3355958 3356350 -152273770 + RMER19B LTR ERVK 25 417 -485 4 610 1571 27 16 0 chr4 3356350 3356534 -152273586 + B2_Mm1a SINE B2 1 187 -6 4 610 2248 219 113 78 chr4 3356534 3356989 -152273131 + RMER19B LTR ERVK 418 902 0 4 610 282 295 19 19 chr4 3356989 3357096 -152273024 - MuRRS4-int LTR ERV1 -6190 1262 1156 4 610 2060 142 26 173 chr4 3358125 3358346 -152271774 - RLTR23 LTR ERV1 0 430 257 4 610 1120 83 14 0 chr4 3358346 3358490 -152271630 - B1_Mus2 SINE Alu 0 147 2 4 610 2060 142 26 173 chr4 3358490 3358772 -152271348 - RLTR23 LTR ERV1 -174 256 1 4 610 906 36 0 0 chr4 3358783 3358893 -152271227 + (TG)n Simple_repeat Simple_repeat 1 110 0 4 610 1075 216 83 4 chr4 3358914 3359156 -152270964 - B4 SINE B4 -28 264 4 4 610 550 204 104 38 chr4 3359294 3359477 -152270643 - B2_Mm2 SINE B2 0 195 1 4 610 1406 251 91 28 chr4 3359633 3360128 -152269992 - RMER5 LTR ERV1 -8 526 1 4 610 225 83 0 0 chr4 3360334 3360370 -152269750 + (T)n Simple_repeat Simple_repeat 1 36 0 4 610 26 0 0 0 chr4 3360519 3360545 -152269575 + AT_rich Low_complexity Low_complexity 1 26 0 4 610 308 202 41 82 chr4 3360651 3360748 -152269372 - PB1D7 SINE Alu 0 120 28 4 610 3726 56 63 22 chr4 3361298 3361493 -152268627 - RLTR1B LTR ERV1 0 512 321 4 610 219 36 0 0 chr4 3361493 3361521 -152268599 + (CTGGGG)n Simple_repeat Simple_repeat 1 28 0 4 610 3726 56 63 22 chr4 3361521 3361817 -152268303 - RLTR1B LTR ERV1 -192 320 2 4 610 5571 83 37 26 chr4 3361817 3363488 -152266632 - RLTR1B-int LTR ERV1 -1312 3751 2131 4 610 1791 55 9 5 chr4 3363489 3363710 -152266410 - RLTR1B-int LTR ERV1 -2269 1030 809 4 610 703 198 95 19 chr4 3363706 3363917 -152266203 - RLTR1B-int LTR ERV1 -2596 703 477 4 610 830 102 41 2 chr4 3363956 3364089 -152266031 - RLTR1B-int LTR ERV1 -2847 452 351 4 610 306 25 25 0 chr4 3364080 3364120 -152266000 - RLTR1B-int LTR ERV1 -2863 436 396 4 610 378 292 0 9 chr4 3364120 3364227 -152265893 + PB1D10 SINE Alu 1 106 -11 4 610 22 0 0 0 chr4 3364292 3364314 -152265806 + AT_rich Low_complexity Low_complexity 1 22 0 4 610 235 211 56 14 chr4 3364318 3364390 -152265730 - Lx2 LINE L1 -6 6991 6917 4 610 566 190 0 0 chr4 3364382 3364482 -152265638 + Lx3C LINE L1 6429 6528 -448 4 610 354 61 0 0 chr4 3364536 3364585 -152265535 + (TAGG)n Simple_repeat Simple_repeat 3 51 0 4 610 1087 278 21 42 chr4 3365027 3365459 -152264661 + L1_Mur3 LINE L1 92 514 -7214 4 610 247 259 70 12 chr4 3365615 3365701 -152264419 + L1_Mur3 LINE L1 547 637 -7091 4 610 4907 166 49 27 chr4 3365698 3366707 -152263413 + L1_Mur3 LINE L1 1324 2354 -3526 4 610 5979 203 62 1 chr4 3366699 3367831 -152262289 + Lx6 LINE L1 6241 7441 -19 4 610 1137 89 0 20 chr4 3367833 3367982 -152262138 - B1_Mus2 SINE Alu 0 147 2 4 610 364 285 47 64 chr4 3368425 3368661 -152261459 + L1ME1 LINE L1 5911 6142 -37 4 610 405 0 0 0 chr4 3368699 3368744 -152261376 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 4 610 990 134 0 0 chr4 3368744 3368901 -152261219 - B2_Mm2 SINE B2 -38 157 1 4 610 893 167 7 0 chr4 3368906 3369050 -152261070 - B1_Mur4 SINE Alu 0 150 6 4 610 279 0 0 0 chr4 3370418 3370449 -152259671 + (T)n Simple_repeat Simple_repeat 1 31 0 4 610 37689 30 2 7 chr4 3370552 3375750 -152254370 + L1Md_T LINE L1 422 5586 -297 4 610 8501 38 0 0 chr4 3375750 3376745 -152253375 + L1Md_T LINE L1 5587 6581 -1 4 610 285 195 0 144 chr4 3376760 3376850 -152253270 + B1_Mur4 SINE Alu 1 77 -71 4 610 835 311 88 0 chr4 3376820 3377116 -152253004 - MLT2B2 LTR ERVL -193 322 1 4 610 284 200 156 0 chr4 3377146 3377236 -152252884 - ERVL-int LTR ERVL -47 5710 5607 4 610 230 260 13 27 chr4 3377411 3377486 -152252634 + MER57D LTR ERV1 327 400 -11 4 610 582 174 0 0 chr4 3378156 3378265 -152251855 + CT-rich Low_complexity Low_complexity 1 109 0 4 610 341 289 0 0 chr4 3378272 3378355 -152251765 - PB1D10 SINE Alu -16 101 19 4 610 207 0 0 0 chr4 3378572 3378595 -152251525 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 610 279 0 0 0 chr4 3378631 3378662 -152251458 + (T)n Simple_repeat Simple_repeat 1 31 0 4 610 953 81 0 0 chr4 3378662 3378798 -152251322 - B1_Mus2 SINE Alu 0 147 12 4 610 546 271 16 0 chr4 3378840 3378969 -152251151 - B3 SINE B2 -38 178 48 4 610 276 30 0 0 chr4 3379095 3379128 -152250992 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 610 351 98 0 0 chr4 3379128 3379189 -152250931 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 610 251 306 0 27 chr4 3380646 3380720 -152249400 + ID4_ SINE ID 5 76 -7 4 610 340 246 0 0 chr4 3380735 3380804 -152249316 + ID4 SINE ID 15 83 0 4 610 333 0 0 0 chr4 3380897 3380934 -152249186 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 610 1104 92 0 0 chr4 3380938 3381079 -152249041 - B1_Mus1 SINE Alu -7 141 1 4 610 1741 216 174 18 chr4 3381122 3381635 -152248485 - RMER19B LTR ERVK -2 900 308 4 610 278 254 32 0 chr4 3381642 3381705 -152248415 + MT2A LTR ERVL 24 88 -445 4 610 228 74 36 18 chr4 3381729 3381784 -152248336 - B2_Mm1t SINE B2 0 193 138 4 610 269 167 0 36 chr4 3381783 3381839 -152248281 - B2_Mm2 SINE B2 -94 101 48 4 610 1147 131 11 6 chr4 3381887 3382063 -152248057 - B2_Mm1t SINE B2 -14 179 3 4 610 1367 209 124 32 chr4 3382104 3382515 -152247605 + MT2A LTR ERVL 85 533 0 4 610 252 307 28 28 chr4 3382518 3382662 -152247458 - L1MC3 LINE L1 -162 7623 7480 4 610 252 256 149 112 chr4 3382851 3383093 -152247027 - L1MC3 LINE L1 -549 7236 6986 4 610 1724 112 28 50 chr4 3383449 3383770 -152246350 + IAPLTR2b LTR ERVK 1 314 -13 4 610 498 176 42 50 chr4 3383786 3383906 -152246214 + IAPEz-int LTR ERVK 1 119 -6702 4 610 35590 75 13 4 chr4 3384156 3389509 -152240611 + IAPEz-int LTR ERVK 222 5515 -966 4 610 250 222 0 0 chr4 3389932 3389986 -152240134 + IAPEz-int LTR ERVK 6150 6203 -1477 4 610 219 69 0 0 chr4 3390009 3390038 -152240082 + (A)n Simple_repeat Simple_repeat 1 29 0 4 610 7006 127 16 19 chr4 3390189 3391359 -152238761 + IAPEz-int LTR ERVK 5525 7297 -383 4 610 1788 116 19 41 chr4 3391359 3391674 -152238446 + IAPLTR2b LTR ERVK 1 308 -19 4 610 641 137 8 0 chr4 3391695 3391812 -152238308 + (TTTTC)n Simple_repeat Simple_repeat 2 119 0 4 610 1207 41 7 0 chr4 3392184 3392330 -152237790 - B1_Mus1 SINE Alu 0 148 2 5 610 324 103 0 0 chr4 3392597 3392655 -152237465 + (T)n Simple_repeat Simple_repeat 1 58 0 5 610 6440 69 7 17 chr4 3393442 3394286 -152235834 - L1Md_F2 LINE L1 -2 6580 5745 5 610 2992 65 19 0 chr4 3394286 3394658 -152235462 + L1Md_F2 LINE L1 5369 5747 -136 5 610 599 232 245 0 chr4 3394843 3394998 -152235122 - B3 SINE B2 -5 211 19 5 610 262 156 0 0 chr4 3395002 3395047 -152235073 - ORR1A3 LTR MaLR -10 384 340 5 610 339 25 0 0 chr4 3395055 3395095 -152235025 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 610 282 175 14 100 chr4 3395108 3395178 -152234942 - B2_Mm2 SINE B2 -85 110 47 5 610 921 82 207 20 chr4 3395263 3395413 -152234707 - B2_Mm1t SINE B2 -14 179 2 5 610 732 102 0 86 chr4 3395416 3395540 -152234580 - ORR1A3 LTR MaLR -42 284 173 5 610 2851 171 49 27 chr4 3395540 3396201 -152233919 - RMER17B LTR ERVK 0 958 348 5 610 423 0 0 0 chr4 3396201 3396248 -152233872 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 5 610 2381 127 40 26 chr4 3396248 3396704 -152233416 - RMER17B LTR ERVK -519 439 1 5 610 1057 103 0 98 chr4 3396704 3396897 -152233223 - ORR1A2 LTR MaLR -153 174 1 5 610 1949 133 82 12 chr4 3397327 3397670 -152232450 - ORR1B2 LTR MaLR 0 367 1 5 610 264 167 0 0 chr4 3397894 3397942 -152232178 + T-rich Low_complexity Low_complexity 1 48 0 5 610 1319 49 0 48 chr4 3397942 3398320 -152231800 + (TTC)n Simple_repeat Simple_repeat 1 360 0 5 610 777 296 74 3 chr4 3398364 3398662 -152231458 + MLT1B LTR MaLR 3 321 -69 5 610 368 314 222 19 chr4 3399294 3399555 -152230565 + MER74A LTR ERVL 17 330 -228 5 610 35711 67 3 4 chr4 3400168 3406379 -152223741 + L1Md_F2 LINE L1 397 6582 0 5 610 381 20 20 0 chr4 3406379 3406429 -152223691 + ORR1A1 LTR MaLR 294 344 -2 5 610 789 39 0 0 chr4 3406438 3406536 -152223584 + MTA_Mm LTR MaLR 1 98 -298 5 610 2096 127 45 20 chr4 3406536 3406937 -152223183 - IAPLTR2a LTR ERVK 0 411 1 5 610 2239 71 3 0 chr4 3406937 3407240 -152222880 + MTA_Mm LTR MaLR 93 396 0 5 611 342 214 58 10 chr4 3408978 3409082 -152221038 + L1MB4 LINE L1 6066 6174 -6 5 611 270 280 53 39 chr4 3409120 3409265 -152220855 - B4A SINE B4 -20 145 1 5 611 220 200 33 16 chr4 3409291 3409352 -152220768 + GA-rich Low_complexity Low_complexity 4 65 0 5 611 746 193 0 7 chr4 3409456 3409597 -152220523 + MTD LTR MaLR 2 141 -278 5 611 2813 57 0 0 chr4 3409599 3409931 -152220189 + IAPEY3_LTR LTR ERVK 1 332 0 5 611 10752 105 16 1 chr4 3409931 3411436 -152218684 + IAPEY3-int LTR ERVK 1 1527 -6153 5 611 33275 48 16 1 chr4 3411420 3415657 -152214463 + IAPEY3-int LTR ERVK 3378 7680 0 5 611 2793 57 0 0 chr4 3415657 3415989 -152214131 + IAPEY3_LTR LTR ERVK 1 332 0 5 611 810 139 20 27 chr4 3415990 3416138 -152213982 + MTD LTR MaLR 139 285 -134 5 611 1075 264 69 66 chr4 3416153 3416485 -152213635 + MTC-int LTR MaLR 637 969 -289 5 611 927 200 106 9 chr4 3416479 3416637 -152213483 + MTD LTR MaLR 171 342 -77 5 611 270 0 0 0 chr4 3416637 3416667 -152213453 + (ATAAG)n Simple_repeat Simple_repeat 1 30 0 5 611 927 200 106 9 chr4 3416667 3416735 -152213385 + MTD LTR MaLR 343 418 -1 5 611 407 246 53 0 chr4 3416775 3416889 -152213231 - L1MA5 LINE L1 0 6300 6181 5 611 379 274 26 26 chr4 3419583 3419699 -152210421 + PB1D10 SINE Alu 1 116 -1 5 611 329 289 50 0 chr4 3419974 3420095 -152210025 + L1MA6 LINE L1 6028 6154 -146 5 611 571 302 40 0 chr4 3420100 3420249 -152209871 + RSINE1 SINE B4 11 165 0 5 611 431 259 19 0 chr4 3420283 3420391 -152209729 + PB1D10 SINE Alu 1 110 -7 5 611 22 35 0 0 chr4 3420433 3420462 -152209658 + AT_rich Low_complexity Low_complexity 1 29 0 5 611 202 129 99 14 chr4 3420545 3420616 -152209504 + (TTAA)n Simple_repeat Simple_repeat 1 77 0 5 611 237 246 35 0 chr4 3422424 3422481 -152207639 + tRNA-Ala-GCA tRNA tRNA 1 59 -16 5 611 589 144 0 17 chr4 3422494 3422614 -152207506 + GA-rich Low_complexity Low_complexity 4 121 0 5 611 276 53 0 0 chr4 3423996 3424034 -152206086 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 611 264 337 0 0 chr4 3424265 3424348 -152205772 + ID4 SINE ID 1 83 0 5 611 234 319 0 0 chr4 3425325 3425394 -152204726 + ID4 SINE ID 14 82 -1 5 611 207 69 0 0 chr4 3426470 3426499 -152203621 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 611 245 321 50 0 chr4 3426626 3426734 -152203386 - B1F1 SINE Alu 0 117 1 5 611 288 227 76 51 chr4 3427322 3427401 -152202719 + ID4_ SINE ID 3 83 0 5 611 224 224 20 0 chr4 3427401 3427450 -152202670 + GA-rich Low_complexity Low_complexity 1 50 0 5 611 773 263 20 10 chr4 3427746 3427946 -152202174 + B3 SINE B2 15 216 0 5 611 761 256 101 4 chr4 3428075 3428303 -152201817 + B4A SINE B4 43 292 0 5 611 959 254 92 7 chr4 3428867 3429149 -152200971 - MER2 DNA MER2_type -14 331 26 5 611 326 306 101 70 chr4 3429169 3429527 -152200593 + L1ME3B LINE L1 5633 6001 -239 5 611 686 208 131 16 chr4 3430271 3430462 -152199658 + B3 SINE B2 4 216 0 5 611 819 193 7 0 chr4 3430485 3430630 -152199490 + B1_Mus1 SINE Alu 1 146 -2 5 611 1120 99 0 6 chr4 3430640 3430654 -152199466 - B2_Mm2 SINE B2 -23 172 159 5 611 315 0 0 0 chr4 3430654 3430689 -152199431 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 611 1120 99 0 6 chr4 3430689 3430847 -152199273 - B2_Mm2 SINE B2 -37 158 2 5 611 828 205 48 53 chr4 3431166 3431372 -152198748 + B3 SINE B2 1 205 -11 5 611 435 278 19 0 chr4 3431737 3431845 -152198275 + B1F1 SINE Alu 29 138 -11 5 611 291 54 0 0 chr4 3431848 3431885 -152198235 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 5 611 278 298 58 0 chr4 3431887 3431991 -152198129 + L1MD1 LINE L1 6083 6192 -50 5 611 362 242 43 21 chr4 3432327 3432420 -152197700 - PB1D10 SINE Alu 0 117 23 5 611 262 275 12 0 chr4 3432420 3432500 -152197620 - L1M4 LINE L1 -446 5732 5652 5 611 317 207 0 12 chr4 3432502 3432585 -152197535 + CT-rich Low_complexity Low_complexity 4 85 0 5 611 705 261 23 28 chr4 3432655 3432872 -152197248 - B3 SINE B2 0 216 1 5 611 211 164 18 35 chr4 3433537 3433594 -152196526 + GA-rich Low_complexity Low_complexity 2 57 0 5 611 555 237 197 5 chr4 3433611 3433819 -152196301 - MER2 DNA MER2_type -10 335 88 5 611 23 0 0 0 chr4 3434010 3434033 -152196087 + AT_rich Low_complexity Low_complexity 1 23 0 5 611 592 320 58 12 chr4 3434797 3435056 -152195064 + Tigger5 DNA MER2_type 2135 2405 -1 5 611 264 305 42 0 chr4 3435468 3435563 -152194557 + PB1D9 SINE Alu 1 99 -21 5 611 541 283 18 36 chr4 3435836 3436001 -152194119 + RSINE1 SINE B4 3 164 -1 5 611 183 129 0 0 chr4 3436003 3436034 -152194086 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 611 461 200 43 136 chr4 3436080 3436242 -152193878 + B1_Mur1 SINE Alu 3 149 0 5 611 246 220 51 0 chr4 3436319 3436378 -152193742 + ID4 SINE ID 3 64 -19 5 611 189 0 0 0 chr4 3436903 3436924 -152193196 + (A)n Simple_repeat Simple_repeat 1 21 0 5 611 343 234 0 0 chr4 3437485 3437549 -152192571 - ID4_ SINE ID -15 68 5 5 611 1626 21 21 0 chr4 3437730 3437917 -152192203 - B2_Mm1a SINE B2 0 193 3 5 611 251 278 71 20 chr4 3438243 3438342 -152191778 + MIRb SINE MIR 85 188 -80 5 611 250 242 30 0 chr4 3438432 3438531 -152191589 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 5 611 462 264 31 75 chr4 3438536 3438696 -152191424 - B4 SINE B4 -86 206 54 5 611 709 266 73 56 chr4 3439241 3439528 -152190592 + L1MB3 LINE L1 5689 5980 -203 5 611 629 286 58 23 chr4 3439597 3439855 -152190265 + L1MB3 LINE L1 5915 6181 -2 5 611 211 156 51 20 chr4 3441604 3441702 -152188418 + A-rich Low_complexity Low_complexity 4 104 0 5 611 1017 208 14 32 chr4 3441967 3442186 -152187934 - B3 SINE B2 -1 215 1 5 611 734 193 7 33 chr4 3442453 3442603 -152187517 - B1_Mur2 SINE Alu 0 149 4 5 611 991 72 71 14 chr4 3442692 3442832 -152187288 + B1_Mus1 SINE Alu 1 148 0 5 611 453 252 65 22 chr4 3445601 3445739 -152184381 - B1F SINE Alu -5 144 1 5 611 224 298 53 0 chr4 3445936 3445993 -152184127 + B1F SINE Alu 1 60 -89 5 611 26 0 0 0 chr4 3446025 3446051 -152184069 + AT_rich Low_complexity Low_complexity 1 26 0 5 611 383 175 157 0 chr4 3446656 3446754 -152183366 + B1_Mus2 SINE Alu 10 121 -26 5 611 7102 74 7 1 chr4 3447400 3448418 -152181702 + L1_Mus1 LINE L1 5549 6653 -1 5 611 473 207 0 22 chr4 3448698 3448787 -152181333 - PB1D10 SINE Alu -24 93 7 5 611 235 381 81 13 chr4 3448699 3448848 -152181272 - B4 SINE B4 -108 184 26 5 611 308 291 25 0 chr4 3448961 3449040 -152181080 + RSINE1 SINE B4 12 92 -73 5 611 1164 272 42 12 chr4 3449141 3449472 -152180648 + Lx8 LINE L1 6219 6559 -914 5 611 1139 244 142 64 chr4 3449540 3449964 -152180156 + Lx8 LINE L1 6659 7115 -358 5 611 29 28 0 0 chr4 3450150 3450186 -152179934 + AT_rich Low_complexity Low_complexity 1 36 0 5 611 456 314 9 13 chr4 3450783 3450909 -152179211 + PB1D7 SINE Alu 3 123 -24 5 611 219 69 0 0 chr4 3450922 3450951 -152179169 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 611 313 297 0 0 chr4 3452391 3452465 -152177655 - PB1D10 SINE Alu 0 117 44 5 611 198 174 0 0 chr4 3452467 3452513 -152177607 + CT-rich Low_complexity Low_complexity 2 47 0 5 611 315 49 0 0 chr4 3452520 3452561 -152177559 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 611 756 158 71 0 chr4 3452563 3452690 -152177430 - B1_Mur3 SINE Alu -13 136 1 5 611 396 308 118 7 chr4 3452690 3452728 -152177392 - B4 SINE B4 -194 98 45 5 611 239 140 82 66 chr4 3453366 3453427 -152176693 + L1MB7 LINE L1 6054 6115 -69 5 611 542 261 15 15 chr4 3453435 3453571 -152176549 - B3A SINE B2 0 198 63 5 611 568 328 26 26 chr4 3453688 3453879 -152176241 + B3A SINE B2 7 197 -1 6 611 974 294 52 88 chr4 3454061 3454583 -152175537 - RLTR18B LTR ERVK -4 508 6 6 611 325 273 104 32 chr4 3454595 3454720 -152175400 - B1F SINE Alu -2 147 14 6 611 1837 182 144 16 chr4 3454701 3455130 -152174990 + RMER5 LTR ERV1 11 494 -40 6 611 498 86 0 0 chr4 3455140 3455221 -152174899 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 611 305 299 0 61 chr4 3455261 3455343 -152174777 - ID_B1 SINE B4 -67 157 81 6 611 624 244 59 45 chr4 3456289 3456491 -152173629 - B3 SINE B2 -4 212 8 6 611 1081 88 0 0 chr4 3456646 3456782 -152173338 + B1_Mus1 SINE Alu 1 136 -12 6 611 273 29 0 0 chr4 3456784 3456818 -152173302 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 611 387 0 0 0 chr4 3457118 3457161 -152172959 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 611 498 17 0 0 chr4 3457161 3457219 -152172901 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 611 1045 336 25 0 chr4 3458128 3458408 -152171712 - B4 SINE B4 -4 288 2 6 611 1608 201 85 9 chr4 3458433 3458775 -152171345 - ORR1D1 LTR MaLR -2 372 5 6 611 243 229 0 20 chr4 3458807 3458856 -152171264 - ID4 SINE ID -35 48 1 6 611 4055 116 142 84 chr4 3458994 3459848 -152170272 + RMER17A2 LTR ERVK 1 903 -3 6 611 331 200 123 9 chr4 3459852 3459958 -152170162 + L1MB7 LINE L1 5734 5851 -333 6 611 186 222 0 0 chr4 3459983 3460037 -152170083 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 611 352 211 43 96 chr4 3460082 3460197 -152169923 - PB1D10 SINE Alu -3 114 6 6 611 473 364 76 50 chr4 3460202 3460584 -152169536 + MER21B LTR ERV1 49 440 -423 6 611 1264 92 75 28 chr4 3460809 3461021 -152169099 - Lx2 LINE L1 -1 6996 6775 6 611 4504 110 14 6 chr4 3461021 3461740 -152168380 - Lx2 LINE L1 -354 6643 5924 6 611 1840 179 107 22 chr4 3461741 3462132 -152167988 - MTD LTR MaLR -8 411 1 6 611 249 258 41 0 chr4 3462165 3462262 -152167858 + L1MB1 LINE L1 5869 5969 -199 6 611 290 269 76 8 chr4 3462354 3462485 -152167635 + L1MB7 LINE L1 6039 6178 -2 6 611 563 281 30 42 chr4 3462512 3462679 -152167441 + RSINE1 SINE B4 1 165 0 6 611 2286 149 143 40 chr4 3462737 3463213 -152166907 + RLTR12B LTR ERVK 2 526 -2 6 611 398 274 121 31 chr4 3463449 3463863 -152166257 + L1MC4 LINE L1 7189 7639 -403 6 611 542 270 64 21 chr4 3463957 3464095 -152166025 - RSINE1 SINE B4 0 165 22 6 611 2075 181 20 30 chr4 3464095 3464169 -152165951 + ORR1B1 LTR MaLR 1 72 -322 6 611 3346 43 2 0 chr4 3464169 3464564 -152165556 + MTA_Mm LTR MaLR 1 396 0 6 611 2075 181 20 30 chr4 3464564 3464887 -152165233 + ORR1B1 LTR MaLR 73 394 0 6 611 31306 65 8 1 chr4 3464893 3470066 -152160054 + L1Md_F2 LINE L1 382 5586 -297 6 611 7965 46 3 1 chr4 3470066 3471044 -152159076 + L1Md_F2 LINE L1 5587 6566 -16 6 611 540 0 0 0 chr4 3471048 3471108 -152159012 + (GAAAA)n Simple_repeat Simple_repeat 2 61 0 6 611 18501 64 2 2 chr4 3471108 3473618 -152156502 + L1_Mm LINE L1 3272 5782 -101 6 611 6990 53 3 0 chr4 3473614 3474523 -152155597 - L1Md_F2 LINE L1 -8 6574 5663 6 611 5960 68 1 37 chr4 3474523 3475354 -152154766 + L1Md_F2 LINE L1 5770 6570 -12 6 611 693 92 0 0 chr4 3475459 3475557 -152154563 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 6 611 324 120 0 0 chr4 3475575 3475625 -152154495 + (GGA)n Simple_repeat Simple_repeat 2 51 0 6 611 189 132 0 0 chr4 3475895 3475933 -152154187 + (CCA)n Simple_repeat Simple_repeat 1 38 0 6 611 315 205 51 13 chr4 3477822 3477901 -152152219 - L1_Rod LINE L1 -825 5022 4941 6 611 303 286 63 0 chr4 3477898 3478024 -152152096 + L1MB2 LINE L1 5976 6109 -62 6 611 328 191 122 87 chr4 3478050 3478165 -152151955 - PB1D9 SINE Alu 0 120 2 6 611 360 247 0 0 chr4 3478270 3478343 -152151777 + ID4 SINE ID 8 80 -3 6 611 284 300 70 0 chr4 3478701 3478801 -152151319 - MER20 DNA MER1_type -93 126 20 6 611 519 17 0 0 chr4 3479161 3479221 -152150899 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 611 306 242 0 0 chr4 3479250 3479316 -152150804 - ID4 SINE ID -14 69 4 6 611 266 317 57 0 chr4 3479340 3479463 -152150657 + L1MC2 LINE L1 6178 6307 -37 6 611 519 240 19 70 chr4 3479893 3480038 -152150082 + B1F2 SINE Alu 1 140 -9 6 611 216 0 0 0 chr4 3480038 3480062 -152150058 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 6 611 519 240 19 70 chr4 3480062 3480073 -152150047 + B1F2 SINE Alu 141 149 0 6 611 260 296 56 0 chr4 3480667 3480738 -152149382 + PB1D7 SINE Alu 36 110 -10 6 611 342 211 0 0 chr4 3480849 3480906 -152149214 + PB1D9 SINE Alu 3 59 -61 6 611 348 264 0 0 chr4 3480958 3481132 -152148988 + GA-rich Low_complexity Low_complexity 2 175 0 6 611 608 215 49 0 chr4 3481132 3481295 -152148825 + (CAGG)n Simple_repeat Simple_repeat 4 174 0 6 611 582 204 0 27 chr4 3481295 3481406 -152148714 + B1_Mm SINE Alu 40 147 0 6 611 1281 204 147 50 chr4 3481941 3482282 -152147838 + ORR1D1 LTR MaLR 1 374 0 6 611 22 35 0 0 chr4 3482287 3482316 -152147804 + AT_rich Low_complexity Low_complexity 1 29 0 6 611 1079 82 0 0 chr4 3482428 3482563 -152147557 + B1_Mm SINE Alu 1 135 -12 6 611 279 0 0 0 chr4 3482564 3482595 -152147525 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 611 284 305 9 54 chr4 3482970 3483081 -152147039 + L2a LINE L2 3283 3388 -38 6 611 286 309 64 32 chr4 3483791 3483951 -152146169 + MIRc SINE MIR 46 206 -56 6 611 355 257 0 0 chr4 3484224 3484294 -152145826 - ID4 SINE ID -11 72 3 6 611 897 194 12 0 chr4 3484549 3484714 -152145406 - URR1B DNA MER1_type 0 225 59 6 611 6482 28 26 19 chr4 3485898 3486052 -152144068 + L1Md_F2 LINE L1 5776 5948 -634 6 611 1287 80 85 0 chr4 3486052 3486212 -152143908 + B2_Mm2 SINE B2 2 161 -34 6 611 369 0 0 0 chr4 3486212 3486253 -152143867 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 611 1287 80 85 0 chr4 3486253 3486268 -152143852 + B2_Mm2 SINE B2 162 190 -5 6 611 6482 28 26 19 chr4 3486268 3486914 -152143206 + L1Md_F2 LINE L1 5949 6582 0 6 611 232 216 19 56 chr4 3488860 3488914 -152141206 + ID4_ SINE ID 23 74 -9 6 611 502 238 27 13 chr4 3489729 3489839 -152140281 + PB1 SINE Alu 10 118 -9 6 611 2948 65 21 12 chr4 3489859 3490280 -152139840 + Lx3B LINE L1 6436 6860 -113 6 611 492 213 28 0 chr4 3490416 3490524 -152139596 + Lx3B LINE L1 6861 6971 -2 6 611 356 212 24 48 chr4 3490610 3490694 -152139426 + ID4 SINE ID 2 83 0 6 611 400 229 6 24 chr4 3490694 3490864 -152139256 + GA-rich Low_complexity Low_complexity 3 169 0 6 611 290 315 36 18 chr4 3490967 3491077 -152139043 + PB1D7 SINE Alu 9 120 0 6 611 21 0 0 0 chr4 3492386 3492407 -152137713 + AT_rich Low_complexity Low_complexity 1 21 0 6 611 22 35 0 0 chr4 3493280 3493309 -152136811 + AT_rich Low_complexity Low_complexity 1 29 0 6 611 498 242 0 10 chr4 3493409 3493505 -152136615 + B1_Mur2 SINE Alu 51 145 -4 6 611 649 354 10 14 chr4 3493992 3494201 -152135919 - B3 SINE B2 0 216 9 6 611 323 279 16 23 chr4 3494218 3494312 -152135808 - PB1D7 SINE Alu -19 101 10 6 611 684 217 93 86 chr4 3494322 3494461 -152135659 + L1M2 LINE L1 5343 5486 -814 6 611 311 221 14 42 chr4 3494461 3494532 -152135588 + ID4_ SINE ID 2 70 -13 6 611 684 217 93 86 chr4 3494532 3494705 -152135415 + L1M2 LINE L1 5487 5657 -643 6 611 662 200 70 5 chr4 3495541 3495682 -152134438 + B1_Mur2 SINE Alu 1 148 0 6 611 356 255 91 10 chr4 3495816 3495915 -152134205 + B3A SINE B2 3 109 -89 6 611 324 0 0 0 chr4 3495915 3495951 -152134169 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 6 611 351 0 0 0 chr4 3496062 3496101 -152134019 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 611 198 103 0 0 chr4 3496103 3496132 -152133988 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 611 383 289 126 58 chr4 3498314 3498505 -152131615 - MTEa LTR MaLR -16 363 160 6 611 721 260 166 5 chr4 3498734 3499101 -152131019 + L1MB7 LINE L1 5566 5991 -193 6 611 1169 68 0 13 chr4 3499395 3499545 -152130575 - B1_Mus1 SINE Alu 0 148 1 6 611 301 329 24 0 chr4 3499617 3499699 -152130421 - Tigger7 DNA MER2_type -1 2490 2407 6 611 329 187 13 0 chr4 3499829 3499904 -152130216 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 6 611 719 258 102 50 chr4 3500021 3500384 -152129736 + L1M2 LINE L1 4484 4865 -1278 1 611 324 103 0 0 chr4 3500465 3500523 -152129597 + (A)n Simple_repeat Simple_repeat 1 58 0 2 611 515 256 14 49 chr4 3500660 3500804 -152129316 + MTE2b LTR MaLR 1 139 -240 3 611 332 314 61 67 chr4 3500804 3500824 -152129296 + MT2A LTR ERVL 1 163 -370 4 611 349 271 74 27 chr4 3500931 3501139 -152128981 + L1MA5 LINE L1 6080 6287 -13 5 611 656 188 119 8 chr4 3501520 3501654 -152128466 - B1_Mur3 SINE Alu 0 149 1 6 611 400 333 62 31 chr4 3501654 3501689 -152128431 - B4 SINE B4 -199 93 54 7 611 22 35 0 0 chr4 3502437 3502466 -152127654 + AT_rich Low_complexity Low_complexity 1 29 0 8 611 720 163 12 81 chr4 3503779 3503939 -152126181 + B1_Mur3 SINE Alu 1 149 0 9 611 464 278 0 0 chr4 3503982 3504079 -152126041 + RSINE1 SINE B4 7 103 -62 1 611 588 268 7 42 chr4 3504086 3504230 -152125890 - B1_Mur1 SINE Alu -9 140 2 1 611 297 51 0 0 chr4 3504232 3504271 -152125849 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 611 1351 189 112 22 chr4 3504562 3504876 -152125244 + ORR1D2 LTR MaLR 29 370 0 1 611 1258 213 82 108 chr4 3504876 3505229 -152124891 + ORR1D2-int LTR MaLR 1 344 -1026 1 611 330 308 103 71 chr4 3505236 3505446 -152124674 - ORR1D-int LTR MaLR -585 995 710 1 611 567 215 250 23 chr4 3505421 3505597 -152124523 + ORR1D2-int LTR MaLR 1048 1263 -107 1 611 942 196 264 17 chr4 3506160 3506456 -152123664 - ORR1D2 LTR MaLR 0 370 2 1 611 494 320 0 13 chr4 3506510 3506662 -152123458 - B4A SINE B4 -10 282 133 1 611 544 195 172 121 chr4 3506746 3506944 -152123176 + ORR1D2 LTR MaLR 1 208 -166 1 611 420 164 0 0 chr4 3506936 3507003 -152123117 + ORR1D2 LTR MaLR 313 379 -5 1 611 645 259 73 34 chr4 3507217 3507544 -152122576 + L1MA4 LINE L1 5579 5918 -382 1 611 22 0 0 0 chr4 3507828 3507850 -152122270 + AT_rich Low_complexity Low_complexity 1 22 0 1 611 712 276 149 5 chr4 3508596 3508818 -152121302 + B4 SINE B4 4 257 -35 1 611 475 266 51 63 chr4 3509016 3509305 -152120815 - MTE2a LTR MaLR -12 367 6 2 611 281 231 50 126 chr4 3509856 3509975 -152120145 + PB1D9 SINE Alu 6 115 -5 2 611 236 149 21 0 chr4 3510778 3510825 -152119295 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 611 662 205 49 61 chr4 3510946 3511145 -152118975 - B3 SINE B2 -6 189 3 2 611 296 287 27 116 chr4 3511545 3511691 -152118429 + MamRep137 DNA TcMar? 309 441 -3 2 611 1336 87 22 0 chr4 3511768 3511952 -152118168 - B2_Mm2 SINE B2 -6 189 2 2 611 272 265 44 0 chr4 3512068 3512136 -152117984 + MIRc SINE MIR 96 166 -102 2 611 243 271 58 43 chr4 3513692 3513787 -152116333 - PB1D7 SINE Alu -37 112 13 2 611 852 278 74 30 chr4 3513927 3514290 -152115830 - MTE2b LTR MaLR 0 379 1 2 611 292 367 33 70 chr4 3514705 3514950 -152115170 - RMER4A LTR ERVK -342 243 8 2 611 2570 134 45 7 chr4 3515046 3515467 -152114653 - RMER6B LTR ERVK -24 437 1 3 611 516 303 86 0 chr4 3515490 3515642 -152114478 + RSINE1 SINE B4 1 165 0 3 611 975 134 71 22 chr4 3515911 3516094 -152114026 + B2_Mm2 SINE B2 3 194 -1 3 611 727 248 133 99 chr4 3517271 3517593 -152112527 - MTEb LTR MaLR -23 356 24 3 611 793 234 26 37 chr4 3517644 3517835 -152112285 - B3 SINE B2 -27 189 1 3 611 688 273 58 16 chr4 3518030 3518220 -152111900 + B3A SINE B2 1 198 0 3 611 337 256 96 21 chr4 3519068 3519225 -152110895 - L1MD LINE L1 -383 5796 5634 3 611 402 321 0 9 chr4 3519985 3520095 -152110025 + PB1D10 SINE Alu 9 117 0 3 611 192 85 0 78 chr4 3520220 3520271 -152109849 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 611 558 256 67 15 chr4 3520275 3520410 -152109710 - B1_Mur4 SINE Alu 0 150 9 3 611 414 0 0 0 chr4 3521587 3521633 -152108487 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 611 438 258 238 0 chr4 3522082 3522233 -152107887 - B3 SINE B2 -28 188 2 4 611 1066 73 67 0 chr4 3522823 3522973 -152107147 + B2_Mm1a SINE B2 1 160 -33 4 611 374 0 22 0 chr4 3522973 3523019 -152107101 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 611 243 0 0 0 chr4 3523021 3523048 -152107072 + (CAAT)n Simple_repeat Simple_repeat 3 29 0 4 611 1035 72 36 14 chr4 3523059 3523199 -152106921 + B1_Mus1 SINE Alu 5 147 -1 4 611 1042 207 248 18 chr4 3523711 3524050 -152106070 - MTC LTR MaLR -2 419 3 4 611 570 15 0 0 chr4 3524685 3524752 -152105368 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 4 611 236 301 40 61 chr4 3524806 3524905 -152105215 + BC1_Mm scRNA scRNA 3 99 -53 4 611 695 202 220 0 chr4 3525159 3525332 -152104788 + B3 SINE B2 2 212 -4 4 611 248 212 15 0 chr4 3525340 3525406 -152104714 + A-rich Low_complexity Low_complexity 3 69 0 5 611 198 118 0 0 chr4 3525668 3525702 -152104418 + (GAA)n Simple_repeat Simple_repeat 2 35 0 5 611 312 273 260 6 chr4 3525858 3526031 -152104089 - L1MC4 LINE L1 -21 8021 7805 5 611 255 250 0 0 chr4 3526137 3526197 -152103923 - L1MC4 LINE L1 -254 7628 7569 5 611 21 0 0 0 chr4 3526432 3526453 -152103667 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 7172 65 5 6 chr4 3526481 3527686 -152102434 - L1_Mus2 LINE L1 0 6566 5361 5 611 620 245 69 0 chr4 3527720 3527879 -152102241 - B2_Mm2 SINE B2 -20 175 6 5 611 246 213 16 0 chr4 3528394 3528455 -152101665 + B3 SINE B2 152 213 -3 5 611 679 259 112 16 chr4 3528532 3528783 -152101337 - RLTR15 LTR ERVK -84 275 1 5 611 262 251 132 118 chr4 3529544 3529756 -152100364 - MIR SINE MIR -7 255 41 5 611 180 0 0 0 chr4 3530711 3530731 -152099389 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 611 767 176 62 19 chr4 3531027 3531189 -152098931 + URR1A DNA MER1_type 58 226 0 6 611 1469 64 0 0 chr4 3531538 3531725 -152098395 - B2_Mm1t SINE B2 -5 188 2 6 611 24 32 0 0 chr4 3531730 3531761 -152098359 + AT_rich Low_complexity Low_complexity 1 31 0 6 611 291 222 0 0 chr4 3532121 3532202 -152097918 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 611 219 262 125 45 chr4 3532297 3532385 -152097735 + RSINE1 SINE B4 15 109 -56 6 611 255 311 57 19 chr4 3533687 3533792 -152096328 - MER5B DNA MER1_type -69 109 1 6 611 506 177 3 84 chr4 3534139 3534260 -152095860 - B1_Mus1 SINE Alu -13 107 1 6 611 240 135 0 0 chr4 3534408 3534445 -152095675 + B4A SINE B4 240 276 -16 6 611 619 181 183 50 chr4 3535586 3535766 -152094354 + B3 SINE B2 3 206 -10 6 611 280 296 42 0 chr4 3535918 3535989 -152094131 + ID4_ SINE ID 1 74 -9 6 611 725 218 100 6 chr4 3536138 3536318 -152093802 - B3A SINE B2 0 198 2 7 611 215 217 50 0 chr4 3536884 3536944 -152093176 - MIRc SINE MIR -144 124 62 7 611 508 279 32 8 chr4 3537098 3537221 -152092899 + RSINE1 SINE B4 34 159 -6 7 611 234 0 0 0 chr4 3537287 3537313 -152092807 + (A)n Simple_repeat Simple_repeat 1 26 0 7 611 569 269 34 0 chr4 3538257 3538376 -152091744 - B3A SINE B2 -29 169 47 7 612 344 318 13 7 chr4 3539245 3539357 -152090763 - PB1D7 SINE Alu -34 115 1 7 612 278 315 0 0 chr4 3539389 3539462 -152090658 + ID4_ SINE ID 5 77 -6 7 612 491 252 17 25 chr4 3540301 3540419 -152089701 + RSINE1 SINE B4 2 118 -47 7 612 410 215 141 0 chr4 3541804 3541914 -152088206 + B1F2 SINE Alu 7 135 -14 7 612 220 267 0 0 chr4 3541917 3541962 -152088158 + polypurine Low_complexity Low_complexity 4 48 0 7 612 500 232 109 23 chr4 3542354 3542482 -152087638 + ID_B1 SINE B4 86 224 0 8 612 710 253 39 7 chr4 3542794 3542949 -152087171 - RSINE1 SINE B4 -4 161 2 8 612 636 262 0 26 chr4 3543118 3543271 -152086849 - B3A SINE B2 -22 176 28 8 612 334 284 19 38 chr4 3543309 3543332 -152086788 - ID_B1 SINE B4 -1 223 199 8 612 227 31 0 30 chr4 3543332 3543365 -152086755 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 8 612 334 284 19 38 chr4 3543365 3543447 -152086673 - ID_B1 SINE B4 -26 198 120 8 612 366 348 96 29 chr4 3543454 3543694 -152086426 - L1MC4a LINE L1 -2008 5874 5619 8 612 521 202 44 194 chr4 3543776 3543936 -152086184 - B3A SINE B2 0 198 58 8 612 426 241 0 0 chr4 3544247 3544326 -152085794 + B3A SINE B2 2 80 -118 8 612 1417 174 156 27 chr4 3544554 3544927 -152085193 + MTC LTR MaLR 1 421 0 8 612 535 269 159 25 chr4 3545485 3545821 -152084299 - MTC LTR MaLR -8 411 5 8 612 238 233 206 22 chr4 3546441 3546533 -152083587 + RLTR25B LTR ERVK 401 509 -519 9 612 661 67 0 11 chr4 3546474 3546564 -152083556 + B1_Mm SINE Alu 47 135 -12 9 612 231 347 51 51 chr4 3546682 3546840 -152083280 + B4A SINE B4 1 158 -134 9 612 708 236 53 13 chr4 3547131 3547281 -152082839 + B3A SINE B2 5 160 -38 9 612 1094 56 35 7 chr4 3547287 3547430 -152082690 + B1_Mus1 SINE Alu 2 148 0 9 612 193 29 0 56 chr4 3547434 3547470 -152082650 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 612 411 217 84 0 chr4 3547499 3547582 -152082538 + B1_Mus2 SINE Alu 2 91 -56 9 612 498 230 253 6 chr4 3547868 3548034 -152082086 + B3 SINE B2 2 208 -8 9 612 1995 210 135 70 chr4 3549240 3549901 -152080219 - RMER17B LTR ERVK -32 926 252 9 612 3435 20 10 0 chr4 3549901 3550293 -152079827 + MTA_Mm LTR MaLR 1 396 0 9 612 1995 164 78 40 chr4 3550293 3550436 -152079684 - RMER17B LTR ERVK -707 251 1 9 612 553 241 189 81 chr4 3550564 3550812 -152079308 + B4 SINE B4 2 276 -16 1 612 261 0 0 0 chr4 3550814 3550843 -152079277 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 612 26 50 0 0 chr4 3550843 3550883 -152079237 + AT_rich Low_complexity Low_complexity 1 40 0 1 612 467 277 14 71 chr4 3550941 3551081 -152079039 - B1_Mur1 SINE Alu 0 149 18 1 612 281 133 32 48 chr4 3551091 3551154 -152078966 + B1F1 SINE Alu 87 148 -1 1 612 221 200 40 13 chr4 3551155 3551231 -152078889 + A-rich Low_complexity Low_complexity 3 80 0 1 612 250 262 75 0 chr4 3551303 3551383 -152078737 - PB1D7 SINE Alu -1 119 34 1 612 1050 102 18 6 chr4 3551619 3551787 -152078333 - URR1A DNA MER1_type 0 226 57 1 612 1368 18 0 17 chr4 3552323 3552496 -152077624 - L1Md_F3 LINE L1 -14 6570 6401 1 612 253 189 0 70 chr4 3553681 3553738 -152076382 - PB1D9 SINE Alu -2 118 66 1 612 267 232 154 39 chr4 3553738 3553868 -152076252 - RLTR23 LTR ERV1 0 430 286 1 612 228 242 14 43 chr4 3554168 3554237 -152075883 + MLT1E3 LTR MaLR 557 623 -1 1 612 1903 142 76 15 chr4 3554249 3554591 -152075529 + ORR1B2 LTR MaLR 5 367 0 1 612 696 267 107 68 chr4 3554729 3555010 -152075110 - B4A SINE B4 0 292 1 1 612 198 0 0 0 chr4 3555280 3555302 -152074818 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 612 696 233 41 7 chr4 3555316 3555463 -152074657 + B3A SINE B2 2 153 -45 1 612 1455 245 108 39 chr4 3555474 3555967 -152074153 + RLTR11A2 LTR ERVK 1 527 0 1 612 24 0 0 0 chr4 3556006 3556030 -152074090 + AT_rich Low_complexity Low_complexity 1 24 0 1 612 623 210 81 0 chr4 3556327 3556451 -152073669 - B1_Mus2 SINE Alu -13 134 1 1 612 720 256 25 128 chr4 3556665 3557032 -152073088 + RLTR11A2 LTR ERVK 1 329 -124 1 612 241 235 61 12 chr4 3557041 3557123 -152072997 + RLTR11A2 LTR ERVK 286 371 -82 1 612 438 20 0 0 chr4 3557985 3558036 -152072084 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 612 1890 185 204 9 chr4 3558041 3558482 -152071638 + RLTR24 LTR ERV1 3 529 0 1 612 393 206 140 106 chr4 3560007 3560186 -152069934 - RLTR19-int LTR ERVK -1763 4374 4190 1 612 328 302 27 48 chr4 3560292 3560438 -152069682 - RLTR19-int LTR ERVK -1978 4159 4017 1 612 180 0 0 0 chr4 3560674 3560694 -152069426 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 1 612 269 189 24 98 chr4 3560694 3560770 -152069350 - MYSERV6-int LTR ERVK -1534 7425 7354 1 612 1934 34 160 1 chr4 3560839 3561127 -152068993 + IAPEY2_LTR LTR ERVK 1 354 -3 1 612 817 122 49 49 chr4 3561127 3561291 -152068829 + IAPLTR4_I LTR ERVK 17 180 -1290 1 612 9390 122 12 55 chr4 3561290 3562812 -152067308 + IAPEY3-int LTR ERVK 524 1980 -5700 1 612 3618 67 7 0 chr4 3562794 3563239 -152066881 + IAPEY3-int LTR ERVK 2242 2689 -4991 1 612 507 34 0 0 chr4 3563232 3563291 -152066829 + IAPEY3-int LTR ERVK 4852 4910 -2770 1 612 3347 114 34 30 chr4 3563291 3564015 -152066105 + IAPEY3-int LTR ERVK 6907 7581 0 1 612 2462 56 3 0 chr4 3564025 3564347 -152065773 + IAPEY2_LTR LTR ERVK 32 354 -3 1 612 246 180 0 0 chr4 3564354 3564415 -152065705 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 612 926 213 42 101 chr4 3564415 3564823 -152065297 - RLTR42-int LTR ERVK -3204 2318 1935 1 612 460 184 0 48 chr4 3564830 3564933 -152065187 - RLTR42-int LTR ERVK -3554 1968 1871 1 612 38 51 0 0 chr4 3565040 3565099 -152065021 + AT_rich Low_complexity Low_complexity 1 59 0 1 612 270 196 59 0 chr4 3565118 3565169 -152064951 - RLTR42-int LTR ERVK -3654 1868 1815 1 612 189 0 0 0 chr4 3565469 3565490 -152064630 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 612 1117 238 32 0 chr4 3566184 3566432 -152063688 - RLTR42-int LTR ERVK -4162 1360 1105 1 612 186 43 0 0 chr4 3567461 3567484 -152062636 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 1 612 3027 31 3 3 chr4 3567844 3568227 -152061893 + MTA_Mm LTR MaLR 1 383 -13 1 612 2953 37 0 8 chr4 3568268 3568621 -152061499 - L1Md_F3 LINE L1 -14 6570 6221 1 612 2782 34 0 0 chr4 3568621 3568946 -152061174 + L1Md_A LINE L1 5692 6016 -566 1 612 239 289 47 24 chr4 3568994 3569079 -152061041 + ORR1E LTR MaLR 6 92 -282 1 612 265 314 11 11 chr4 3569091 3569178 -152060942 + ORR1E LTR MaLR 83 169 -190 1 612 1210 35 0 14 chr4 3569411 3569558 -152060562 + B1_Mm SINE Alu 1 145 -2 1 612 297 100 0 0 chr4 3569559 3569609 -152060511 + (A)n Simple_repeat Simple_repeat 1 50 0 1 612 207 0 0 0 chr4 3569691 3569714 -152060406 + (T)n Simple_repeat Simple_repeat 1 23 0 1 612 1138 88 0 0 chr4 3569714 3569861 -152060259 - B1_Mus2 SINE Alu 0 147 1 1 612 180 0 0 0 chr4 3569973 3569993 -152060127 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 612 279 0 0 0 chr4 3570430 3570461 -152059659 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 612 696 24 0 0 chr4 3570461 3570542 -152059578 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 612 650 110 28 240 chr4 3570585 3570764 -152059356 - B1_Mur3 SINE Alu -7 142 2 1 612 528 308 111 0 chr4 3570977 3571185 -152058935 + L1MB3 LINE L1 5902 6132 -51 1 612 480 304 54 5 chr4 3571245 3571430 -152058690 + Tigger5 DNA MER2_type 14 207 -2199 1 612 580 181 0 0 chr4 3571627 3571721 -152058399 - B3 SINE B2 -118 98 5 1 612 347 330 10 0 chr4 3571730 3571830 -152058290 - PB1 SINE Alu -4 123 23 1 612 266 317 88 16 chr4 3572099 3572224 -152057896 - MIRb SINE MIR -121 147 14 1 612 246 62 0 0 chr4 3572555 3572587 -152057533 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1 612 339 193 145 81 chr4 3573229 3573257 -152056863 + B1F SINE Alu 18 44 -105 1 612 2203 169 46 34 chr4 3573257 3573474 -152056646 - MTC LTR MaLR 0 421 210 1 612 1105 90 7 0 chr4 3573474 3573619 -152056501 - B1_Mm SINE Alu 0 147 2 1 612 2203 169 46 34 chr4 3573619 3573817 -152056303 - MTC LTR MaLR -212 209 1 1 612 339 193 145 81 chr4 3573817 3573912 -152056208 + B1F SINE Alu 45 149 0 1 612 313 181 12 24 chr4 3573912 3573997 -152056123 + GA-rich Low_complexity Low_complexity 2 85 0 1 612 230 308 62 37 chr4 3574528 3574609 -152055511 + MER58D DNA MER1_type 6 88 -298 1 612 281 198 60 24 chr4 3574570 3574653 -152055467 + B1_Mus2 SINE Alu 61 146 -1 1 612 228 300 0 0 chr4 3575932 3576002 -152054118 + PB1 SINE Alu 28 97 -30 1 612 1628 216 64 5 chr4 3577010 3577401 -152052719 - MTD LTR MaLR 0 419 6 1 612 1556 50 40 0 chr4 3578207 3578407 -152051713 - L1_Mus2 LINE L1 -1 6565 6358 1 612 264 247 73 16 chr4 3578882 3578990 -152051130 - PB1D10 SINE Alu -32 117 9 1 612 448 265 29 0 chr4 3579277 3579379 -152050741 + PB1D10 SINE Alu 2 106 -11 1 612 620 326 123 17 chr4 3580629 3581050 -152049070 + MER74A LTR ERVL 1 466 -92 1 612 219 289 0 0 chr4 3581056 3581101 -152049019 + polypyrimidine Low_complexity Low_complexity 1 45 0 1 612 233 352 0 0 chr4 3581111 3581182 -152048938 - ID_B1 SINE B4 -70 154 84 1 612 250 288 0 0 chr4 3581124 3581183 -152048937 - B1F1 SINE Alu -89 60 2 1 612 259 280 87 47 chr4 3581504 3581654 -152048466 - L1MC4 LINE L1 -449 7593 7438 1 612 23 54 0 0 chr4 3582033 3582070 -152048050 + AT_rich Low_complexity Low_complexity 1 37 0 1 612 559 285 0 0 chr4 3582085 3582215 -152047905 - B3A SINE B2 -68 130 1 1 612 683 223 6 51 chr4 3582215 3582374 -152047746 - MLT1B LTR MaLR -220 170 20 1 612 1065 97 0 0 chr4 3582497 3582641 -152047479 + B1_Mus2 SINE Alu 4 147 0 1 612 460 277 0 18 chr4 3583200 3583314 -152046806 - PB1 SINE Alu 0 127 16 1 612 191 234 45 45 chr4 3583771 3583838 -152046282 + L2b LINE L2 3306 3372 -3 1 612 246 336 54 18 chr4 3583850 3583962 -152046158 + B1F1 SINE Alu 8 123 -26 1 612 626 276 31 104 chr4 3583979 3584067 -152046053 + B4 SINE B4 4 93 -199 1 612 315 49 0 0 chr4 3584067 3584108 -152046012 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 612 626 276 31 104 chr4 3584108 3584306 -152045814 + B4 SINE B4 94 269 -23 1 612 444 82 0 0 chr4 3584306 3584367 -152045753 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 612 676 257 0 0 chr4 3585353 3585493 -152044627 + B1_Mur1 SINE Alu 2 141 -8 1 612 205 301 0 27 chr4 3586134 3586209 -152043911 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 612 572 271 0 22 chr4 3586360 3586496 -152043624 + B1F SINE Alu 15 147 -2 1 612 392 145 29 0 chr4 3586840 3586909 -152043211 - ID4_ SINE ID -10 73 3 1 612 3175 75 2 21 chr4 3587603 3588038 -152042082 - L1_Mus2 LINE L1 0 6566 6140 1 612 241 248 95 60 chr4 3588191 3588307 -152041813 - PB1D7 SINE Alu 0 120 1 1 612 371 85 0 33 chr4 3588551 3588612 -152041508 + B1_Mus2 SINE Alu 1 59 -88 1 612 386 164 0 82 chr4 3588612 3588758 -152041362 + GA-rich Low_complexity Low_complexity 1 134 0 1 612 606 133 0 135 chr4 3588760 3588968 -152041152 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 1 612 251 162 144 48 chr4 3588970 3589074 -152041046 + RLTR25B LTR ERVK 397 510 -518 1 612 766 38 0 19 chr4 3589008 3589116 -152041004 + B1_Mus2 SINE Alu 42 147 0 1 612 184 30 29 29 chr4 3589117 3589151 -152040969 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 612 858 283 115 3 chr4 3589696 3590026 -152040094 - MTE2b LTR MaLR -12 367 1 1 612 269 179 15 15 chr4 3590119 3590187 -152039933 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 612 333 253 12 0 chr4 3590329 3590412 -152039708 - PB1D10 SINE Alu -20 97 14 1 612 2208 280 47 37 chr4 3591073 3591770 -152038350 + Lx8 LINE L1 6770 7473 0 1 612 633 341 7 65 chr4 3591914 3592193 -152037927 + MLT2D LTR ERVL 86 348 -66 1 612 364 108 48 0 chr4 3592218 3592301 -152037819 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 1 612 252 170 0 0 chr4 3592318 3592371 -152037749 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 612 306 309 72 9 chr4 3592691 3592802 -152037318 + MIRb SINE MIR 16 133 -135 1 612 2087 189 81 23 chr4 3592950 3593433 -152036687 + RLTR11A LTR ERVK 1 511 -17 1 612 586 187 154 0 chr4 3593444 3593567 -152036553 + B1_Mur3 SINE Alu 5 146 -3 1 612 194 329 0 58 chr4 3593860 3593947 -152036173 - L2b LINE L2 -222 3153 3072 1 612 448 292 31 78 chr4 3594246 3594439 -152035681 - ORR1E LTR MaLR -174 185 2 2 612 879 245 182 36 chr4 3594439 3594827 -152035293 - ORR1E-int LTR MaLR -52 1528 1081 2 612 2071 259 16 4 chr4 3594789 3595305 -152034815 + MT2A LTR ERVL 10 531 -2 2 612 388 256 111 88 chr4 3595355 3595526 -152034594 - ORR1E-int LTR MaLR -535 1045 871 2 612 524 322 106 26 chr4 3595566 3595871 -152034249 - ORR1E-int LTR MaLR -832 748 419 2 612 501 264 31 0 chr4 3595871 3596000 -152034120 + RSINE1 SINE B4 4 136 -29 2 612 965 262 57 64 chr4 3596060 3596328 -152033792 - RLTR12B LTR ERVK -46 522 249 2 612 662 0 13 0 chr4 3596328 3596406 -152033714 + (TTC)n Simple_repeat Simple_repeat 2 80 0 2 612 965 261 57 64 chr4 3596406 3596643 -152033477 - RLTR12B LTR ERVK -318 250 13 2 612 417 70 0 0 chr4 3596652 3596709 -152033411 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 612 2411 154 2 5 chr4 3596770 3597175 -152032945 + MTC LTR MaLR 18 421 0 2 612 820 257 44 0 chr4 3597342 3597548 -152032572 + B3 SINE B2 1 215 -1 2 612 710 329 25 70 chr4 3597859 3598227 -152031893 - MTEa LTR MaLR -13 366 6 2 612 790 200 7 0 chr4 3599067 3599212 -152030908 - B1_Mur4 SINE Alu 0 150 5 2 612 423 56 0 0 chr4 3599331 3599385 -152030735 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 612 460 260 10 0 chr4 3599536 3599640 -152030480 + B1F SINE Alu 45 149 0 2 612 788 146 0 14 chr4 3599640 3599690 -152030430 + polypurine Low_complexity Low_complexity 1 49 0 2 612 1100 119 6 0 chr4 3599690 3599867 -152030253 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 612 788 146 0 14 chr4 3599867 3599962 -152030158 + polypurine Low_complexity Low_complexity 50 144 0 2 612 394 309 0 18 chr4 3600118 3600230 -152029890 + PB1D10 SINE Alu 5 114 -3 2 612 1844 130 201 44 chr4 3600793 3600967 -152029153 - MTC LTR MaLR 0 421 198 2 612 1483 87 0 5 chr4 3600967 3601163 -152028957 - B2_Mm2 SINE B2 0 195 1 2 612 1844 130 201 44 chr4 3601163 3601351 -152028769 - MTC LTR MaLR -224 197 2 2 612 278 269 70 6 chr4 3601848 3601973 -152028147 + L1MC4a LINE L1 7762 7995 0 2 612 821 204 55 0 chr4 3603459 3603640 -152026480 - URR1B DNA MER1_type 0 225 35 2 612 687 197 73 0 chr4 3604175 3604312 -152025808 + B1_Mus1 SINE Alu 2 148 0 2 612 1178 36 0 0 chr4 3606947 3607084 -152023036 - B1_Mus2 SINE Alu -10 137 1 2 612 189 107 0 0 chr4 3608125 3608153 -152021967 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 612 328 313 61 0 chr4 3609589 3609688 -152020432 - B1F1 SINE Alu -44 105 1 2 612 275 243 27 13 chr4 3610363 3610438 -152019682 + GA-rich Low_complexity Low_complexity 2 77 0 2 612 463 304 8 0 chr4 3610908 3611033 -152019087 + PB1 SINE Alu 1 126 -1 2 612 1817 210 95 21 chr4 3611070 3611159 -152018961 - RLTR20D LTR ERVK 0 568 479 2 612 261 0 0 0 chr4 3611159 3611188 -152018932 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 612 1817 210 95 21 chr4 3611188 3611580 -152018540 - RLTR20D LTR ERVK -90 478 53 2 612 332 269 214 56 chr4 3611687 3611939 -152018181 - B4A SINE B4 0 292 1 2 612 852 216 129 14 chr4 3611951 3612114 -152018006 + Lx9 LINE L1 7316 7495 -149 2 612 234 0 0 0 chr4 3612114 3612140 -152017980 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2 612 852 216 129 14 chr4 3612140 3612271 -152017849 + Lx9 LINE L1 7496 7643 -1 2 612 237 267 21 43 chr4 3612288 3612382 -152017738 - L1MA6 LINE L1 -6 6294 6203 2 612 291 54 0 0 chr4 3612720 3612757 -152017363 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 612 1677 163 56 16 chr4 3613606 3614037 -152016083 - RMER17C LTR ERVK -521 437 1 2 612 401 231 211 29 chr4 3614053 3614159 -152015961 - MER2 DNA MER2_type -95 250 125 2 612 1232 118 16 0 chr4 3614159 3614345 -152015775 - B2_Mm2 SINE B2 -6 189 1 2 612 401 231 211 29 chr4 3614345 3614447 -152015673 - MER2 DNA MER2_type -221 124 4 2 612 371 305 25 0 chr4 3614492 3614610 -152015510 + CT-rich Low_complexity Low_complexity 4 124 0 2 612 347 306 28 7 chr4 3614739 3614884 -152015236 - B1F1 SINE Alu 0 149 2 2 612 1077 87 0 0 chr4 3614988 3615126 -152014994 + B1_Mus1 SINE Alu 2 139 -9 2 612 305 24 24 0 chr4 3615126 3615168 -152014952 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 612 1064 91 23 0 chr4 3615359 3615535 -152014585 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 612 423 0 0 0 chr4 3615535 3615582 -152014538 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 2 612 719 174 0 43 chr4 3615592 3615730 -152014390 - B1_Mur4 SINE Alu -15 135 4 2 612 859 262 73 24 chr4 3616393 3616682 -152013438 + L1MB3 LINE L1 5784 6086 -97 2 612 1665 184 91 8 chr4 3616935 3617296 -152012824 - MTD LTR MaLR -28 391 1 2 612 306 0 0 0 chr4 3617676 3617710 -152012410 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 612 774 319 46 12 chr4 3617761 3618002 -152012118 - B4A SINE B4 -11 281 33 2 612 707 262 117 4 chr4 3618984 3619248 -152010872 + MER2 DNA MER2_type 2 295 -50 2 612 293 381 31 0 chr4 3620370 3620467 -152009653 - PB1 SINE Alu -26 101 2 2 612 563 256 39 0 chr4 3620671 3620827 -152009293 + B4A SINE B4 43 204 -88 2 612 352 255 0 47 chr4 3621024 3621131 -152008989 - RSINE1 SINE B4 -61 104 3 2 612 420 236 55 0 chr4 3621133 3621243 -152008877 - PB1D10 SINE Alu 0 117 2 2 612 234 116 0 0 chr4 3621272 3621315 -152008805 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 612 435 103 0 0 chr4 3621550 3621618 -152008502 + B1_Mur3 SINE Alu 82 149 0 2 612 210 139 0 44 chr4 3621618 3621663 -152008457 + A-rich Low_complexity Low_complexity 6 48 0 2 612 872 204 81 10 chr4 3621759 3621957 -152008163 - B3 SINE B2 -4 212 1 2 612 483 170 50 10 chr4 3622604 3622705 -152007415 - B3A SINE B2 -90 108 4 2 612 800 257 133 86 chr4 3622731 3623093 -152007027 - MTEb LTR MaLR 0 379 1 2 612 388 317 33 16 chr4 3624210 3624332 -152005788 - PB1 SINE Alu 0 127 4 2 612 888 61 0 0 chr4 3624339 3624454 -152005666 + (TTTTG)n Simple_repeat Simple_repeat 2 116 0 2 612 273 246 0 58 chr4 3624458 3624527 -152005593 - ID4_ SINE ID -11 72 8 2 612 1102 67 36 0 chr4 3624577 3624742 -152005378 + (TCTCCC)n Simple_repeat Simple_repeat 3 173 0 2 612 434 292 0 0 chr4 3625197 3625303 -152004817 + RSINE1 SINE B4 38 143 -22 2 612 291 54 0 0 chr4 3625315 3625352 -152004768 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 2 612 240 306 12 12 chr4 3625740 3625826 -152004294 + L1ME3 LINE L1 5852 5937 -225 2 612 247 239 62 52 chr4 3626008 3626105 -152004015 - L1MB4 LINE L1 -29 6151 6054 2 612 443 332 96 35 chr4 3626823 3627166 -152002954 - Tigger8 DNA MER2_type -246 420 57 2 612 23 0 0 0 chr4 3627635 3627658 -152002462 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 249 33 0 0 chr4 3627798 3627828 -152002292 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 612 537 211 8 58 chr4 3627840 3627961 -152002159 - B3A SINE B2 -80 118 4 2 612 823 260 155 44 chr4 3628091 3628324 -152001796 + MTD LTR MaLR 1 266 -153 2 612 405 0 0 0 chr4 3628324 3628369 -152001751 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 612 261 0 0 0 chr4 3628369 3628397 -152001723 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 612 823 260 155 44 chr4 3628397 3628504 -152001616 + MTD LTR MaLR 267 379 -40 2 612 184 286 132 16 chr4 3628715 3628836 -152001284 - L2 LINE L2 -805 2614 2480 2 612 252 137 0 0 chr4 3628954 3629005 -152001115 + (TTAG)n Simple_repeat Simple_repeat 2 52 0 2 612 684 180 55 0 chr4 3629005 3629133 -152000987 - B1_Mur1 SINE Alu -2 147 13 2 612 705 190 48 21 chr4 3629275 3629420 -152000700 - B1_Mur2 SINE Alu 0 149 1 2 612 951 206 31 0 chr4 3629697 3629891 -152000229 - B3 SINE B2 -6 210 11 2 612 842 183 6 6 chr4 3630050 3630215 -151999905 - Lx4A LINE L1 -1 7057 6893 2 612 803 211 9 19 chr4 3631225 3631416 -151998704 + B3 SINE B2 12 187 -8 2 612 710 234 72 5 chr4 3632780 3632973 -151997147 - B3 SINE B2 -5 211 6 2 612 234 217 129 14 chr4 3632991 3633061 -151997059 - PB1D7 SINE Alu 0 120 43 2 612 3625 164 19 3 chr4 3633318 3633910 -151996210 - RMER1B Other Other -2 1064 464 2 612 676 62 0 0 chr4 3633987 3634068 -151996052 - L1_Mus2 LINE L1 -338 6228 6148 2 612 9380 55 8 2 chr4 3634082 3635930 -151994190 - L1Md_F2 LINE L1 -2 6580 4724 2 612 519 272 13 13 chr4 3635973 3636122 -151993998 - B1F2 SINE Alu 0 149 1 2 612 258 105 0 0 chr4 3637007 3637045 -151993075 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 612 247 275 105 29 chr4 3637119 3637224 -151992896 + MLT1A1 LTR MaLR 294 406 -2 2 612 252 247 37 12 chr4 3638318 3638400 -151991720 - MIRb SINE MIR -90 178 95 2 612 1160 163 28 19 chr4 3640008 3640221 -151989899 - B3 SINE B2 -1 215 1 2 612 185 349 36 0 chr4 3640507 3640590 -151989530 - MIRb SINE MIR -52 216 131 2 612 424 205 205 0 chr4 3642360 3642482 -151987638 + B1_Mus1 SINE Alu 2 148 0 2 612 275 191 155 0 chr4 3642661 3642745 -151987375 - ID_B1 SINE B4 -22 202 106 2 612 21 36 0 0 chr4 3642751 3642779 -151987341 + AT_rich Low_complexity Low_complexity 1 28 0 2 612 331 291 163 37 chr4 3643161 3643407 -151986713 - MER119 DNA MER1_type -155 428 152 2 612 640 185 47 100 chr4 3643744 3643894 -151986226 - B1_Mur2 SINE Alu -6 143 2 2 612 31 26 0 0 chr4 3644098 3644136 -151985984 + AT_rich Low_complexity Low_complexity 1 38 0 2 612 30 0 0 0 chr4 3644213 3644243 -151985877 + AT_rich Low_complexity Low_complexity 1 30 0 2 612 232 186 203 0 chr4 3644243 3644302 -151985818 - ID4_ SINE ID -11 72 2 2 612 407 273 49 108 chr4 3644370 3644555 -151985565 + B4A SINE B4 1 174 -118 2 612 468 0 0 0 chr4 3644614 3644666 -151985454 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 612 477 0 0 0 chr4 3644670 3644723 -151985397 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 612 649 154 214 0 chr4 3644744 3644861 -151985259 + B1_Mus1 SINE Alu 1 142 -6 3 612 573 15 0 0 chr4 3644864 3644930 -151985190 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 612 259 292 65 42 chr4 3645477 3645645 -151984475 - L1MC1 LINE L1 -34 6310 6139 3 612 758 168 0 22 chr4 3645708 3645842 -151984278 - B1_Mur3 SINE Alu -17 132 2 3 612 557 265 63 35 chr4 3645852 3646106 -151984014 - L1MC1 LINE L1 -210 6123 5863 3 612 912 246 163 23 chr4 3646122 3646471 -151983649 - L1MC1 LINE L1 -583 5750 5353 3 612 425 308 77 0 chr4 3646509 3646626 -151983494 - RSINE1 SINE B4 -38 127 2 3 612 297 0 0 0 chr4 3646634 3646667 -151983453 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3 612 348 148 0 0 chr4 3647577 3647638 -151982482 + (TCC)n Simple_repeat Simple_repeat 3 63 0 3 612 391 290 73 0 chr4 3648328 3648452 -151981668 - B1_Mur2 SINE Alu -6 143 11 3 612 734 235 132 52 chr4 3648453 3648816 -151981304 - L1MC1 LINE L1 -953 5193 4802 3 612 204 40 0 0 chr4 3649052 3649077 -151981043 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 612 234 159 0 0 chr4 3649077 3649121 -151980999 - B1_Mm SINE Alu -3 144 101 3 612 22 0 0 0 chr4 3649121 3649143 -151980977 + AT_rich Low_complexity Low_complexity 1 22 0 3 612 1208 34 0 14 chr4 3649143 3649291 -151980829 - B1_Mm SINE Alu 0 147 2 3 612 528 263 16 63 chr4 3649499 3649690 -151980430 + MER20 DNA MER1_type 34 215 -4 3 612 252 149 53 11 chr4 3650746 3650841 -151979279 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 612 258 56 0 0 chr4 3650945 3650981 -151979139 + (CTG)n Simple_repeat Simple_repeat 2 37 0 3 612 1597 267 92 4 chr4 3651018 3651529 -151978591 - Lx8 LINE L1 0 7473 6918 3 612 381 188 38 86 chr4 3651717 3651822 -151978298 + MT2B LTR ERVL 157 256 -345 3 612 617 128 1 3 chr4 3651739 3651840 -151978280 + B1_Mus1 SINE Alu 19 119 -30 3 612 453 19 0 0 chr4 3651840 3651894 -151978226 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 612 585 72 0 0 chr4 3651894 3651976 -151978144 + (GA)n Simple_repeat Simple_repeat 1 83 0 3 612 311 0 0 25 chr4 3652279 3652319 -151977801 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 612 1092 88 0 0 chr4 3652319 3652456 -151977664 - B1_Mus1 SINE Alu -11 137 1 3 612 213 196 43 0 chr4 3652488 3652534 -151977586 + B1_Mus1 SINE Alu 1 48 -100 3 612 508 287 50 35 chr4 3652613 3652815 -151977305 + B3A SINE B2 8 212 -4 3 612 289 286 0 61 chr4 3653760 3653842 -151976278 + ID_B1 SINE B4 81 157 -67 3 612 1710 185 154 11 chr4 3653882 3654336 -151975784 - RMER5 LTR ERV1 -5 529 11 3 612 281 273 104 32 chr4 3654317 3654442 -151975678 + B1F SINE Alu 14 147 -2 3 612 771 291 56 90 chr4 3654454 3654975 -151975145 + RLTR18B LTR ERVK 6 508 -4 3 612 508 323 26 26 chr4 3655152 3655343 -151974777 - B3A SINE B2 -1 197 7 3 612 483 261 15 15 chr4 3655460 3655596 -151974524 + B3A SINE B2 63 198 0 3 612 255 158 82 66 chr4 3655604 3655665 -151974455 - L1MB7 LINE L1 -69 6115 6054 3 612 731 137 68 8 chr4 3656346 3656478 -151973642 + B1_Mur4 SINE Alu 10 149 -1 3 612 383 130 13 0 chr4 3656491 3656568 -151973552 + (GA)n Simple_repeat Simple_repeat 2 79 0 3 612 260 324 0 0 chr4 3656570 3656644 -151973476 + PB1D10 SINE Alu 44 117 0 3 612 423 56 0 0 chr4 3658082 3658136 -151971984 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 612 376 258 32 20 chr4 3658149 3658273 -151971847 - PB1D7 SINE Alu -24 123 3 3 612 29 28 0 0 chr4 3658870 3658906 -151971214 + AT_rich Low_complexity Low_complexity 1 36 0 3 612 2557 258 126 48 chr4 3659060 3659919 -151970201 - Lx8 LINE L1 -329 7144 6219 3 612 343 238 25 0 chr4 3660020 3660100 -151970020 - RSINE1 SINE B4 -73 92 11 3 612 446 230 0 0 chr4 3660275 3660362 -151969758 + PB1D10 SINE Alu 7 93 -24 3 612 7530 64 21 1 chr4 3660642 3661646 -151968474 - L1_Mus1 LINE L1 -1 6653 5549 3 612 513 183 118 30 chr4 3662698 3662833 -151967287 - B1_Mur4 SINE Alu 0 150 4 3 612 249 57 0 0 chr4 3662834 3662869 -151967251 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 612 28 0 0 0 chr4 3663485 3663513 -151966607 + AT_rich Low_complexity Low_complexity 1 28 0 3 612 486 243 63 21 chr4 3663799 3663942 -151966178 + B1F SINE Alu 1 149 0 3 612 212 222 44 0 chr4 3663942 3663987 -151966133 + polypurine Low_complexity Low_complexity 3 49 0 3 612 1002 65 71 14 chr4 3666708 3666848 -151963272 - B1_Mus1 SINE Alu 0 148 1 3 612 718 169 27 34 chr4 3666937 3667084 -151963036 + B1_Mur2 SINE Alu 4 149 0 3 612 1058 198 14 32 chr4 3667351 3667570 -151962550 + B3 SINE B2 1 215 -1 3 612 275 126 56 22 chr4 3667839 3667928 -151962192 + T-rich Low_complexity Low_complexity 4 95 0 3 76 1247 262 70 44 chr4 3669667 3670149 -151959971 - L1MB3 LINE L1 -2 6181 5687 3 613 443 264 31 75 chr4 3670694 3670854 -151959266 + B4 SINE B4 54 206 -86 3 613 249 257 29 0 chr4 3670859 3670964 -151959156 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 3 613 224 341 12 0 chr4 3670997 3671082 -151959038 + (CATA)n Simple_repeat Simple_repeat 4 89 0 3 613 267 268 71 20 chr4 3671083 3671182 -151958938 - MIRb SINE MIR -80 188 85 3 613 250 243 93 59 chr4 3671531 3671649 -151958471 - MER2 DNA MER2_type -103 242 121 3 613 350 253 0 25 chr4 3671673 3671754 -151958366 + ID4_ SINE ID 5 83 0 3 613 222 237 51 0 chr4 3672835 3672894 -151957226 - ID4 SINE ID -19 64 3 3 613 457 222 19 111 chr4 3672971 3673133 -151956987 - B1_Mur1 SINE Alu 0 149 3 3 613 204 125 0 0 chr4 3673181 3673213 -151956907 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 613 485 296 22 15 chr4 3673228 3673365 -151956755 - RSINE1 SINE B4 -25 140 3 3 613 264 305 42 0 chr4 3673638 3673733 -151956387 - PB1D9 SINE Alu -21 99 1 3 613 575 324 58 12 chr4 3674145 3674404 -151955716 - Tigger5 DNA MER2_type -1 2405 2135 3 613 23 0 0 0 chr4 3675169 3675192 -151954928 + AT_rich Low_complexity Low_complexity 1 23 0 3 613 531 237 197 5 chr4 3675383 3675591 -151954529 + MER2 DNA MER2_type 88 335 -10 3 613 205 182 18 18 chr4 3675608 3675664 -151954456 + CT-rich Low_complexity Low_complexity 3 58 0 3 613 811 242 23 28 chr4 3676332 3676549 -151953571 + B3 SINE B2 1 216 0 3 613 299 222 12 0 chr4 3676617 3676698 -151953422 + GA-rich Low_complexity Low_complexity 2 83 0 3 613 244 272 12 12 chr4 3676699 3676781 -151953339 + L1M4 LINE L1 5652 5733 -445 3 613 380 236 22 11 chr4 3676786 3676876 -151953244 + PB1D10 SINE Alu 27 117 0 3 613 284 289 58 0 chr4 3677241 3677345 -151952775 - L1MD1 LINE L1 -50 6192 6083 3 613 240 35 0 0 chr4 3677347 3677376 -151952744 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 3 613 401 296 19 0 chr4 3677379 3677487 -151952633 - B1F1 SINE Alu -11 138 29 3 613 204 293 17 0 chr4 3677526 3677584 -151952536 + GA-rich Low_complexity Low_complexity 2 60 0 3 613 759 226 48 53 chr4 3677859 3678065 -151952055 - B3 SINE B2 -11 205 1 3 613 1175 96 96 6 chr4 3678517 3678675 -151951445 + B2_Mm2 SINE B2 1 157 -38 3 613 387 0 0 0 chr4 3678675 3678718 -151951402 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 613 1175 96 96 6 chr4 3678718 3678737 -151951383 + B2_Mm2 SINE B2 158 193 -2 3 613 819 186 14 0 chr4 3678747 3678892 -151951228 - B1_Mus1 SINE Alu -1 147 1 3 613 708 206 125 16 chr4 3678917 3679109 -151951011 - B3 SINE B2 0 216 4 3 613 313 310 82 88 chr4 3679849 3680203 -151949917 - L1ME3B LINE L1 -239 6001 5650 3 613 859 259 100 7 chr4 3680227 3680507 -151949613 + MER2 DNA MER2_type 26 331 -14 3 613 718 277 99 4 chr4 3681067 3681310 -151948810 - B4A SINE B4 0 292 27 3 613 768 264 25 15 chr4 3681424 3681624 -151948496 - B3 SINE B2 0 216 15 3 613 195 129 0 0 chr4 3681928 3681959 -151948161 + (TCTCCC)n Simple_repeat Simple_repeat 2 32 0 3 613 288 227 76 51 chr4 3681968 3682047 -151948073 - ID4_ SINE ID 0 83 3 3 613 189 74 0 0 chr4 3683096 3683123 -151946997 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 613 234 319 0 0 chr4 3684199 3684268 -151945852 - ID4 SINE ID -1 82 14 3 613 264 337 0 0 chr4 3685245 3685328 -151944792 - ID4 SINE ID 0 83 1 3 613 276 53 0 0 chr4 3685559 3685597 -151944523 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 613 589 144 0 17 chr4 3686979 3687099 -151943021 + CT-rich Low_complexity Low_complexity 4 121 0 3 613 237 246 35 0 chr4 3687112 3687169 -151942951 - tRNA-Ala-GCA tRNA tRNA -16 59 1 3 613 202 129 99 14 chr4 3688977 3689048 -151941072 + (TTAA)n Simple_repeat Simple_repeat 4 80 0 3 613 22 35 0 0 chr4 3689131 3689160 -151940960 + AT_rich Low_complexity Low_complexity 1 29 0 3 613 423 269 19 0 chr4 3689202 3689310 -151940810 - PB1D10 SINE Alu -7 110 1 3 613 571 302 40 0 chr4 3689345 3689494 -151940626 - RSINE1 SINE B4 0 165 11 3 613 329 289 50 0 chr4 3689499 3689620 -151940500 - L1MA6 LINE L1 -146 6154 6028 3 613 379 274 26 26 chr4 3689896 3690012 -151940108 - PB1D10 SINE Alu -1 116 1 3 613 407 246 53 0 chr4 3692710 3692824 -151937296 + L1MA5 LINE L1 6181 6300 0 3 613 487 236 137 18 chr4 3692864 3692933 -151937187 - MTD LTR MaLR 0 419 352 4 613 225 0 0 0 chr4 3692933 3692958 -151937162 + (CTTAT)n Simple_repeat Simple_repeat 1 25 0 4 613 487 236 137 18 chr4 3692958 3693056 -151937064 - MTD LTR MaLR -68 351 234 4 613 1163 246 65 59 chr4 3693075 3693412 -151936708 - MTC-int LTR MaLR -289 969 631 4 613 1424 174 10 85 chr4 3693423 3693730 -151936390 - MTD LTR MaLR -134 285 2 4 613 261 282 55 35 chr4 3693922 3694067 -151936053 + B4A SINE B4 1 145 -20 4 613 351 202 67 9 chr4 3694105 3694210 -151935910 - L1MB4 LINE L1 -6 6174 6064 4 613 3367 40 2 0 chr4 3695946 3696341 -151933779 - MTA_Mm LTR MaLR 0 396 1 4 613 2903 44 3 0 chr4 3696350 3696693 -151933427 - ORR1A1 LTR MaLR -2 344 1 4 613 1238 126 45 40 chr4 3697090 3697314 -151932806 - URR1B DNA MER1_type 0 225 1 4 613 207 176 0 0 chr4 3698672 3698706 -151931414 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 4 613 697 251 75 5 chr4 3699632 3699832 -151930288 + B3 SINE B2 3 216 0 4 613 265 270 16 0 chr4 3699876 3699939 -151930181 - RSINE1 SINE B4 -99 66 3 4 613 712 250 25 10 chr4 3700196 3700394 -151929726 - L1MB3 LINE L1 -294 5889 5689 4 613 444 59 0 29 chr4 3700395 3700454 -151929666 + BGLII_B LTR ERVK 1 59 -382 4 613 3728 49 64 0 chr4 3700454 3700926 -151929194 + L1Md_F3 LINE L1 6083 6584 0 4 613 444 70 274 35 chr4 3700926 3700937 -151929183 + BGLII_B LTR ERVK 60 68 -373 4 613 1205 48 7 0 chr4 3700937 3701083 -151929037 + B1_Mus1 SINE Alu 2 148 0 4 613 352 188 11 101 chr4 3701083 3701100 -151929020 + BGLII_B LTR ERVK 67 81 -611 4 613 594 148 0 0 chr4 3701101 3701202 -151928918 + (GGA)n Simple_repeat Simple_repeat 3 103 0 4 613 767 221 33 10 chr4 3701202 3701485 -151928635 + BGLII_B LTR ERVK 54 441 0 4 613 496 289 183 15 chr4 3701564 3701761 -151928359 - B4 SINE B4 -3 289 60 4 613 207 0 0 0 chr4 3701779 3701802 -151928318 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 613 234 257 77 51 chr4 3701809 3701887 -151928233 - L1MB3 LINE L1 -544 5639 5560 4 613 243 0 0 0 chr4 3704406 3704433 -151925687 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 613 186 167 0 0 chr4 3705194 3705230 -151924890 + (CCA)n Simple_repeat Simple_repeat 1 36 0 4 613 23 0 0 0 chr4 3705884 3705907 -151924213 + AT_rich Low_complexity Low_complexity 1 23 0 4 613 561 199 4 12 chr4 3706414 3706664 -151923456 + (CA)n Simple_repeat Simple_repeat 1 247 0 4 613 703 244 153 34 chr4 3706997 3707121 -151922999 - MLT1A0 LTR MaLR 0 365 212 4 613 195 129 0 0 chr4 3707121 3707152 -151922968 + (CATG)n Simple_repeat Simple_repeat 4 34 0 4 613 703 244 153 34 chr4 3707152 3707353 -151922767 - MLT1A0 LTR MaLR -154 211 1 4 613 1180 57 0 0 chr4 3707384 3707525 -151922595 + B1_Mus1 SINE Alu 2 142 -6 4 613 360 64 0 0 chr4 3707528 3707575 -151922545 + (A)n Simple_repeat Simple_repeat 1 47 0 4 613 796 242 24 48 chr4 3707597 3707805 -151922315 + B3A SINE B2 1 203 -13 4 613 259 209 0 32 chr4 3708440 3708514 -151921606 - ID2 SINE ID -64 88 17 4 613 484 172 0 22 chr4 3708520 3708609 -151921511 - PB1D10 SINE Alu -16 101 15 4 613 345 271 10 20 chr4 3708526 3708624 -151921496 - ID_B1 SINE B4 -48 176 80 4 613 243 0 0 0 chr4 3709534 3709561 -151920559 + (T)n Simple_repeat Simple_repeat 1 27 0 4 613 1079 88 0 45 chr4 3709561 3709715 -151920405 - B1_Mm SINE Alu 0 147 1 4 613 1010 222 10 5 chr4 3710663 3710867 -151919253 + B3 SINE B2 3 207 -9 4 613 186 103 0 0 chr4 3711636 3711665 -151918455 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 613 504 48 0 0 chr4 3712317 3712380 -151917740 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 4 613 1187 186 14 9 chr4 3712457 3712669 -151917451 + B3 SINE B2 4 216 0 4 613 973 226 14 9 chr4 3714866 3715076 -151915044 + B3 SINE B2 6 216 0 4 613 291 28 0 0 chr4 3715668 3715704 -151914416 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 613 218 250 0 0 chr4 3715729 3715773 -151914347 - B3 SINE B2 -115 101 58 4 613 1221 119 11 0 chr4 3715826 3716003 -151914117 - B2_Mm1t SINE B2 -14 179 1 4 613 1435 89 5 5 chr4 3716023 3716216 -151913904 + B2_Mm2 SINE B2 1 193 -2 4 613 225 94 0 0 chr4 3716451 3716483 -151913637 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 613 632 242 58 120 chr4 3716507 3716732 -151913388 - B4 SINE B4 -18 274 64 4 613 213 257 56 14 chr4 3718883 3718954 -151911166 + B4 SINE B4 8 81 -211 4 613 313 99 0 58 chr4 3719205 3719291 -151910829 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 613 300 53 0 0 chr4 3719878 3719916 -151910204 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 613 324 103 0 0 chr4 3720169 3720227 -151909893 + (T)n Simple_repeat Simple_repeat 1 58 0 4 613 1182 62 0 0 chr4 3720227 3720373 -151909747 - B1_Mus2 SINE Alu 0 147 2 4 613 2066 137 67 6 chr4 3720379 3720725 -151909395 - ORR1B2 LTR MaLR 0 367 1 4 613 490 203 0 33 chr4 3720947 3721100 -151909020 + (TG)n Simple_repeat Simple_repeat 1 148 0 4 613 246 294 72 84 chr4 3721110 3721277 -151908843 - RSINE1 SINE B4 0 165 1 4 613 3197 225 92 137 chr4 3721583 3722900 -151907220 - RMER1A Other Other -2 1028 1 4 613 1599 187 101 6 chr4 3722871 3723199 -151906921 - RMER1B Other Other -651 415 57 4 613 289 287 168 25 chr4 3723829 3723990 -151906130 - MER46C DNA MER2_type -154 184 1 4 613 246 306 26 51 chr4 3725171 3725268 -151904852 - MER74A LTR ERVL -228 330 234 4 613 2359 69 119 11 chr4 3725268 3725620 -151904500 - RLTR10 LTR ERVK 0 390 1 4 613 356 305 25 55 chr4 3725620 3725786 -151904334 - MER74A LTR ERVL -325 233 23 4 613 765 293 67 8 chr4 3726444 3726712 -151903408 - MLT1B LTR MaLR -104 286 3 4 613 413 158 0 12 chr4 3726750 3726833 -151903287 + GA-rich Low_complexity Low_complexity 1 82 0 4 613 1957 130 82 9 chr4 3727047 3727389 -151902731 + ORR1B2 LTR MaLR 1 367 0 4 613 1112 75 5 104 chr4 3727822 3728015 -151902105 + ORR1A2 LTR MaLR 1 174 -153 4 613 2394 100 47 16 chr4 3728015 3728433 -151901687 + RMER17B LTR ERVK 1 433 -525 4 613 993 126 6 11 chr4 3728433 3728610 -151901510 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 4 613 2949 157 57 190 chr4 3728610 3729283 -151900837 + RMER17B LTR ERVK 374 958 0 4 613 819 86 0 0 chr4 3729283 3729399 -151900721 + ORR1A3 LTR MaLR 169 284 -42 4 613 853 95 207 20 chr4 3729402 3729552 -151900568 + B2_Mm1t SINE B2 2 179 -14 4 613 293 111 17 69 chr4 3729637 3729695 -151900425 + B2_Mm2 SINE B2 47 101 -94 4 613 339 25 0 0 chr4 3729719 3729759 -151900361 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 613 287 133 0 0 chr4 3729774 3729819 -151900301 + ORR1A3 LTR MaLR 340 384 -10 4 613 587 240 247 0 chr4 3729823 3729977 -151900143 + B3 SINE B2 19 210 -6 4 613 180 77 0 0 chr4 3730610 3730636 -151899484 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 613 203 143 48 0 chr4 3730968 3731010 -151899110 + A-rich Low_complexity Low_complexity 5 48 0 4 613 1178 42 14 0 chr4 3731259 3731403 -151898717 + B1_Mus1 SINE Alu 2 147 -1 4 613 183 173 0 0 chr4 3731405 3731457 -151898663 + A-rich Low_complexity Low_complexity 1 52 0 4 613 1139 82 0 0 chr4 3732308 3732455 -151897665 + B1_Mus1 SINE Alu 2 148 0 4 613 270 0 0 0 chr4 3732760 3732790 -151897330 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 613 1463 139 2 291 chr4 3732790 3733173 -151896947 + RMER17C LTR ERVK 1 231 -179 4 613 1106 52 22 0 chr4 3733173 3733307 -151896813 - B1_Mm SINE Alu -10 137 1 4 613 1463 139 2 291 chr4 3733307 3733500 -151896620 + RMER17C LTR ERVK 232 410 0 4 613 1175 68 0 0 chr4 3733596 3733743 -151896377 + B1_Mus2 SINE Alu 1 147 0 4 613 309 296 85 18 chr4 3734148 3734313 -151895807 + L1MC3 LINE L1 6838 7013 -772 4 613 305 282 133 97 chr4 3734573 3734852 -151895268 + L1MC3 LINE L1 6987 7275 -510 4 613 318 326 21 28 chr4 3735003 3735148 -151894972 + L1MC3 LINE L1 7480 7623 -162 4 613 1456 193 127 30 chr4 3735151 3735552 -151894568 - MT2A LTR ERVL 0 533 94 4 613 1267 97 23 0 chr4 3735603 3735778 -151894342 + B2_Mm2 SINE B2 3 181 -14 4 613 300 162 15 34 chr4 3735824 3735893 -151894227 + B2_Mm2 SINE B2 46 118 -80 4 613 673 163 0 15 chr4 3735919 3736056 -151894064 + A-rich Low_complexity Low_complexity 2 136 0 4 613 271 254 32 0 chr4 3736056 3736119 -151894001 - MT2A LTR ERVL -445 88 24 4 613 1766 223 68 32 chr4 3736134 3736638 -151893482 + RMER19C LTR ERVK 88 609 -2 4 613 399 95 0 0 chr4 3736647 3736675 -151893445 + (A)n Simple_repeat Simple_repeat 1 28 0 4 613 1103 96 0 0 chr4 3736675 3736821 -151893299 + B1_Mus1 SINE Alu 3 148 0 4 613 399 95 0 0 chr4 3736821 3736855 -151893265 + (A)n Simple_repeat Simple_repeat 1 34 0 4 613 293 266 0 0 chr4 3736953 3737017 -151893103 - ID4 SINE ID -5 78 15 4 613 214 318 0 31 chr4 3737032 3737097 -151893023 - ID4 SINE ID -7 76 14 4 613 268 230 67 33 chr4 3737201 3737291 -151892829 + L1MC3 LINE L1 7677 7769 -16 4 613 450 0 0 0 chr4 3738623 3738673 -151891447 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 613 486 49 0 0 chr4 3738673 3738733 -151891387 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 613 658 294 12 0 chr4 3738848 3739011 -151891109 + B3 SINE B2 14 178 -38 4 613 260 311 0 0 chr4 3739328 3739402 -151890718 + PB1D10 SINE Alu 28 101 -16 4 613 786 187 0 0 chr4 3739428 3739583 -151890537 + GA-rich Low_complexity Low_complexity 4 158 0 4 613 2877 69 134 41 chr4 3739583 3740024 -151890096 + RLTR45 LTR ERVK 1 482 0 4 613 35928 39 19 10 chr4 3740024 3742322 -151887798 + RLTR45-int LTR ERVK 1 2311 -4933 4 613 288 0 0 0 chr4 3742322 3742354 -151887766 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 613 35928 39 19 10 chr4 3742354 3744363 -151885757 + RLTR45-int LTR ERVK 2312 4344 -2900 4 613 1040 277 22 44 chr4 3744363 3744774 -151885346 - L1_Mur3 LINE L1 -7235 477 76 4 613 405 70 0 0 chr4 3745217 3745274 -151884846 + (CCTA)n Simple_repeat Simple_repeat 3 59 0 4 613 569 190 0 0 chr4 3745328 3745428 -151884692 - Lx3C LINE L1 -448 6528 6429 4 613 47 0 0 0 chr4 3745468 3745515 -151884605 + AT_rich Low_complexity Low_complexity 1 47 0 4 613 394 283 0 9 chr4 3745581 3745688 -151884432 - PB1D10 SINE Alu -11 106 1 5 613 274 239 0 22 chr4 3745920 3746010 -151884110 - Lx6 LINE L1 -26 7434 7347 5 613 419 243 8 67 chr4 3746785 3746904 -151883216 + PB1D10 SINE Alu 6 117 0 5 613 26 0 0 0 chr4 3747014 3747040 -151883080 + AT_rich Low_complexity Low_complexity 1 26 0 5 613 276 53 0 0 chr4 3747189 3747227 -151882893 + (A)n Simple_repeat Simple_repeat 1 38 0 5 613 1419 249 91 28 chr4 3747433 3747928 -151882192 + RMER5 LTR ERV1 1 526 -8 5 613 558 193 117 50 chr4 3748084 3748264 -151881856 + B2_Mm2 SINE B2 1 192 -3 5 613 1029 213 92 4 chr4 3748406 3748646 -151881474 + B4 SINE B4 4 264 -28 5 613 456 19 0 0 chr4 3748670 3748723 -151881397 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 613 1287 115 43 132 chr4 3748735 3749016 -151881104 + RLTR23 LTR ERV1 1 256 -174 5 613 1132 76 14 0 chr4 3749017 3749161 -151880959 + B1_Mus2 SINE Alu 2 147 0 5 613 291 157 0 0 chr4 3749163 3749214 -151880906 + A-rich Low_complexity Low_complexity 1 51 0 5 613 336 208 9 94 chr4 3749216 3749322 -151880798 + RLTR23 LTR ERV1 233 329 -101 5 613 576 144 0 0 chr4 3749468 3749565 -151880555 + RLTR23 LTR ERV1 334 430 0 5 613 261 336 0 0 chr4 3750548 3750655 -151879465 + MuRRS4-int LTR ERV1 1156 1262 -6190 5 613 3305 192 108 32 chr4 3750655 3751495 -151878625 - RMER19B LTR ERVK 0 902 45 5 613 328 335 28 28 chr4 3751548 3751729 -151878391 + MuRRS4-int LTR ERV1 1255 1435 -3628 5 613 1206 167 33 89 chr4 3751729 3752031 -151878089 + RLTR23 LTR ERV1 146 430 0 5 613 204 274 0 0 chr4 3752307 3752358 -151877762 + GA-rich Low_complexity Low_complexity 3 53 0 5 613 1319 70 32 5 chr4 3752481 3752669 -151877451 - B2_Mm1a SINE B2 0 193 1 5 613 233 333 30 20 chr4 3752869 3752970 -151877150 + PB1D7 SINE Alu 1 102 -18 5 613 312 218 0 0 chr4 3752976 3753031 -151877089 + PB1D9 SINE Alu 21 75 -45 5 613 297 128 0 0 chr4 3753151 3753198 -151876922 + Lx8 LINE L1 7424 7470 -3 5 613 555 303 45 25 chr4 3753233 3753433 -151876687 + B4A SINE B4 1 204 -88 5 613 300 127 70 0 chr4 3753470 3753541 -151876579 + GA-rich Low_complexity Low_complexity 4 79 0 5 613 1051 46 0 23 chr4 3753860 3753993 -151876127 - B1_Mus2 SINE Alu -16 131 2 5 613 1294 170 29 36 chr4 3753993 3754268 -151875852 - ORR1B1 LTR MaLR -41 353 81 5 613 1194 61 0 20 chr4 3754574 3754725 -151875395 + B1_Mus1 SINE Alu 1 148 0 5 613 389 308 19 0 chr4 3754789 3754896 -151875224 + PB1D10 SINE Alu 2 110 -7 5 613 198 315 106 15 chr4 3755199 3755331 -151874789 - MIR SINE MIR -10 252 109 5 613 1212 54 0 0 chr4 3755342 3755489 -151874631 + B1_Mm SINE Alu 1 147 0 5 613 233 261 116 0 chr4 3755538 3755607 -151874513 + MT2B LTR ERVL 181 257 -344 5 613 522 174 51 0 chr4 3755546 3755644 -151874476 + B1_Mus1 SINE Alu 39 141 -7 5 613 251 260 187 0 chr4 3756023 3756173 -151873947 + Tigger6a DNA MER2_type 868 1045 -38 5 613 342 266 36 27 chr4 3756336 3756448 -151873672 + B1F SINE Alu 31 143 -6 5 613 262 218 0 0 chr4 3756527 3756582 -151873538 + B1_Mus2 SINE Alu 92 146 -1 5 613 523 222 126 31 chr4 3756609 3756841 -151873279 + L1MB1 LINE L1 5531 5789 -400 5 613 345 308 28 18 chr4 3756859 3756968 -151873152 + B1F1 SINE Alu 1 110 -10 5 613 476 226 302 17 chr4 3756974 3757212 -151872908 + L1MB1 LINE L1 5816 6121 -47 5 613 909 272 113 33 chr4 3757224 3757559 -151872561 - Lx8 LINE L1 -4 7469 7108 5 613 509 247 146 16 chr4 3757567 3757752 -151872368 + B3 SINE B2 3 211 -5 5 613 603 157 207 0 chr4 3758058 3758179 -151871941 + B1_Mur4 SINE Alu 5 150 0 5 613 457 291 23 38 chr4 3758522 3758654 -151871466 - RSINE1 SINE B4 -33 132 3 5 613 238 255 133 33 chr4 3758899 3759049 -151871071 + L1MA5 LINE L1 5803 5967 -333 5 613 208 89 0 118 chr4 3759569 3759620 -151870500 + (ATTTG)n Simple_repeat Simple_repeat 3 47 0 5 613 359 165 192 67 chr4 3759921 3760025 -151870095 - PB1D9 SINE Alu -1 119 3 5 613 329 178 159 9 chr4 3760173 3760271 -151869849 + B1_Mm SINE Alu 35 142 -7 5 613 247 172 34 17 chr4 3760625 3760684 -151869436 + 4.5SRNA scRNA scRNA 27 86 -8 5 613 778 47 19 0 chr4 3760632 3760739 -151869381 + B1_Mus1 SINE Alu 39 147 -1 5 613 331 231 66 115 chr4 3760634 3760756 -151869364 + B4 SINE B4 125 240 -52 5 613 318 271 18 53 chr4 3761184 3761297 -151868823 + PB1D9 SINE Alu 12 120 0 5 613 275 209 81 2 chr4 3761460 3761541 -151868579 + B3A SINE B2 16 99 -96 5 613 326 246 116 29 chr4 3763157 3763295 -151866825 + RSINE1 SINE B4 16 165 0 5 613 519 165 19 19 chr4 3764167 3764272 -151865848 - B1_Mus2 SINE Alu -1 146 42 5 613 370 220 115 39 chr4 3764318 3764422 -151865698 - PB1D9 SINE Alu 0 120 9 5 613 242 250 15 59 chr4 3764361 3764429 -151865691 - B4A SINE B4 -142 150 86 5 613 240 344 30 30 chr4 3764667 3764766 -151865354 - B1F2 SINE Alu -50 99 1 5 613 351 271 10 10 chr4 3764822 3764919 -151865201 + PB1D10 SINE Alu 11 107 -10 5 613 284 0 28 0 chr4 3764919 3764955 -151865165 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 613 275 308 13 0 chr4 3764978 3765056 -151865064 + ID2 SINE ID 5 83 0 5 613 505 168 157 9 chr4 3765120 3765228 -151864892 + B1_Mur2 SINE Alu 25 148 -1 5 613 324 120 0 0 chr4 3765228 3765278 -151864842 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 5 613 529 256 106 22 chr4 3765279 3765370 -151864750 + B3 SINE B2 11 106 -110 5 613 360 0 0 0 chr4 3765370 3765410 -151864710 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 613 1204 29 0 0 chr4 3765410 3765548 -151864572 - B1_Mm SINE Alu -9 138 1 5 613 529 256 106 22 chr4 3765548 3765635 -151864485 + B3 SINE B2 107 204 -12 5 613 220 326 78 39 chr4 3765886 3765988 -151864132 + B3A SINE B2 63 168 -30 5 613 590 217 57 98 chr4 3765988 3766021 -151864099 + L1MB1 LINE L1 5647 5672 -517 5 613 1875 153 25 0 chr4 3766021 3766342 -151863778 + ORR1A4 LTR MaLR 1 329 0 5 613 612 221 69 38 chr4 3766342 3766449 -151863671 + L1MA9 LINE L1 5668 5781 -531 5 613 189 0 0 0 chr4 3766449 3766470 -151863650 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 613 612 221 69 38 chr4 3766470 3766522 -151863598 + L1MA9 LINE L1 5782 5832 -480 5 613 187 103 0 49 chr4 3766817 3766858 -151863262 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 613 27 49 0 0 chr4 3767015 3767056 -151863064 + AT_rich Low_complexity Low_complexity 1 41 0 5 613 269 89 0 22 chr4 3767065 3767111 -151863009 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 613 364 211 14 30 chr4 3767197 3767292 -151862828 - RSINE1 SINE B4 -200 92 1 5 613 830 333 62 26 chr4 3767331 3767827 -151862293 + RMER5 LTR ERV1 21 534 0 5 613 239 318 36 57 chr4 3767975 3768115 -151862005 - MER20 DNA MER1_type -54 165 29 5 613 183 42 0 0 chr4 3768919 3768943 -151861177 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 613 861 102 51 0 chr4 3768943 3769080 -151861040 - B2_Mm2 SINE B2 -50 145 2 5 613 1063 279 131 56 chr4 3769141 3769267 -151860853 - Charlie1a DNA MER1_type 0 1455 1328 5 613 1214 56 0 0 chr4 3769267 3769411 -151860709 + B1_Mus2 SINE Alu 2 145 -2 5 613 351 0 0 0 chr4 3769411 3769450 -151860670 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 613 1063 279 131 56 chr4 3769450 3770103 -151860017 - Charlie1a DNA MER1_type -128 1327 618 5 613 485 32 16 0 chr4 3770145 3770208 -151859912 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 613 754 253 103 37 chr4 3770227 3770469 -151859651 - B4 SINE B4 -13 279 22 5 613 189 0 0 0 chr4 3770543 3770564 -151859556 + (T)n Simple_repeat Simple_repeat 1 21 0 5 613 1310 189 45 0 chr4 3771125 3771389 -151858731 - RLTR20A1 LTR ERVK 0 551 276 5 613 3203 126 58 8 chr4 3771400 3771987 -151858133 + MYSERV16_I-int LTR ERVK 1157 1772 -554 5 613 1070 101 0 0 chr4 3772103 3772242 -151857878 + B1_Mus1 SINE Alu 2 140 -8 5 613 739 278 65 50 chr4 3772262 3772466 -151857654 + L1MA4A LINE L1 5512 5708 -595 5 613 423 0 0 0 chr4 3772466 3772513 -151857607 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 613 739 295 85 57 chr4 3772513 3772929 -151857191 + L1MA4A LINE L1 5674 6108 -942 5 613 778 252 13 0 chr4 3772967 3773122 -151856998 + RSINE1 SINE B4 3 159 -6 5 613 833 184 0 7 chr4 3773214 3773351 -151856769 + B1_Mur1 SINE Alu 4 139 -10 5 613 708 259 35 5 chr4 3773697 3773895 -151856225 + ID_B1 SINE B4 7 210 -14 5 613 900 225 75 0 chr4 3773984 3774171 -151855949 + B3 SINE B2 5 205 -11 5 613 615 241 14 106 chr4 3774518 3774718 -151855402 - B3A SINE B2 0 198 13 5 613 3815 55 12 62 chr4 3774718 3775237 -151854883 + MT2_Mm LTR ERVL 1 493 0 5 613 615 241 14 106 chr4 3775237 3775254 -151854866 - B3A SINE B2 -186 12 1 5 613 318 276 123 13 chr4 3775272 3775426 -151854694 - L1MA9 LINE L1 -345 5967 5797 5 613 210 375 24 24 chr4 3775605 3775728 -151854392 - L2 LINE L2 -685 2734 2612 5 613 646 161 40 47 chr4 3776100 3776250 -151853870 - B1_Mur1 SINE Alu 0 149 1 5 613 480 288 13 25 chr4 3776290 3776447 -151853673 + ID_B1 SINE B4 74 224 0 5 613 723 327 135 33 chr4 3776449 3777145 -151852975 + L1M4 LINE L1 3881 4647 -1499 5 613 511 211 11 0 chr4 3777145 3777240 -151852880 - Lx8 LINE L1 -366 7107 7012 5 613 1582 214 138 152 chr4 3777236 3777948 -151852172 - Lx8 LINE L1 -591 6882 6181 5 613 375 255 31 0 chr4 3777928 3778089 -151852031 - L1M2 LINE L1 -2948 3195 3030 5 613 6581 163 47 16 chr4 3778084 3779786 -151850334 - Lx5 LINE L1 -2 7048 5283 5 613 647 73 27 9 chr4 3780067 3780178 -151849942 - L1_Mus3 LINE L1 -11 6627 6515 5 613 227 255 29 58 chr4 3780255 3780359 -151849761 - RMER1C Other Other 0 1342 1242 6 613 269 261 0 0 chr4 3780372 3780437 -151849683 + CT-rich Low_complexity Low_complexity 2 66 0 6 613 476 270 107 11 chr4 3780437 3780699 -151849421 - L1_Rod LINE L1 -3173 2707 2421 6 613 546 307 85 31 chr4 3780699 3781227 -151848893 - L1_Rod LINE L1 -3642 2205 1686 6 613 1234 41 0 0 chr4 3781227 3781373 -151848747 - B1_Mus2 SINE Alu 0 147 2 6 613 297 314 47 105 chr4 3781373 3781480 -151848640 - L1_Rod LINE L1 -4195 1685 1588 6 613 1209 92 6 34 chr4 3781480 3781499 -151848621 - B2_Mm1a SINE B2 -19 174 161 6 613 279 0 0 0 chr4 3781499 3781530 -151848590 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 613 1209 92 6 34 chr4 3781530 3781689 -151848431 - B2_Mm1a SINE B2 -33 160 1 6 613 297 314 47 105 chr4 3781689 3781754 -151848366 - L1_Rod LINE L1 -4293 1587 1528 6 613 571 324 0 0 chr4 3781755 3781894 -151848226 + RSINE1 SINE B4 3 141 -24 6 613 26 30 0 0 chr4 3782058 3782091 -151848029 + AT_rich Low_complexity Low_complexity 1 33 0 6 613 387 309 133 3 chr4 3782101 3782387 -151847733 + L1MB8 LINE L1 5638 5960 -218 6 613 315 295 55 55 chr4 3782555 3782619 -151847501 - L1M4 LINE L1 -1678 4468 4408 6 613 973 54 84 8 chr4 3782619 3782750 -151847370 - B1_Mm SINE Alu -6 141 1 6 613 315 295 55 55 chr4 3782750 3782850 -151847270 - L1M4 LINE L1 -1739 4407 4304 6 613 400 257 45 27 chr4 3782872 3782984 -151847136 - B1_Mur4 SINE Alu 0 150 37 6 613 1997 229 146 105 chr4 3782991 3784372 -151845748 - RMER1A Other Other -3 1027 1 6 613 298 329 38 71 chr4 3784842 3785025 -151845095 + ID_B1 SINE B4 2 178 -46 6 613 297 271 34 86 chr4 3784924 3785041 -151845079 + PB1D7 SINE Alu 10 120 0 6 613 384 285 36 102 chr4 3785413 3785550 -151844570 - B1F SINE Alu 0 149 22 6 613 303 323 136 11 chr4 3785893 3786084 -151844036 - L1M5 LINE L1 -964 5182 4968 6 613 244 274 137 0 chr4 3787702 3787771 -151842349 + PB1D10 SINE Alu 1 79 -38 6 613 653 286 15 0 chr4 3787771 3787904 -151842216 + RSINE1 SINE B4 1 135 -30 6 613 216 0 0 0 chr4 3787909 3787933 -151842187 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 613 318 331 35 7 chr4 3788341 3788430 -151841690 + B1F1 SINE Alu 2 87 -227 6 613 1054 219 14 5 chr4 3788458 3788669 -151841451 - B3 SINE B2 -2 214 2 6 613 322 253 172 21 chr4 3788813 3788999 -151841121 - HAL1 LINE L1 -424 2083 1870 6 613 287 271 58 29 chr4 3789024 3789161 -151840959 - HAL1 LINE L1 -733 1774 1634 6 613 230 247 173 0 chr4 3789852 3789933 -151840187 + MIR SINE MIR 39 133 -75 6 613 195 42 0 0 chr4 3789938 3789962 -151840158 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 613 234 0 0 0 chr4 3790986 3791012 -151839108 + (T)n Simple_repeat Simple_repeat 1 26 0 6 613 1080 95 7 7 chr4 3792242 3792390 -151837730 - B1_Mus1 SINE Alu 0 148 1 6 613 529 250 72 59 chr4 3792554 3792707 -151837413 + RSINE1 SINE B4 11 165 0 6 613 661 260 0 8 chr4 3792769 3792897 -151837223 + RSINE1 SINE B4 3 129 -36 6 613 2767 94 17 14 chr4 3793101 3793198 -151836922 - BGLII_Mus LTR ERVK 0 422 330 6 613 4739 61 27 40 chr4 3793198 3793830 -151836290 + RLTR1 LTR ERV1 1 624 0 6 613 2767 94 17 14 chr4 3793830 3794153 -151835967 - BGLII_Mus LTR ERVK -93 329 1 6 613 288 0 0 0 chr4 3794598 3794630 -151835490 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 613 1193 49 7 0 chr4 3794870 3795014 -151835106 - B1_Mm SINE Alu -1 146 2 6 613 715 209 102 24 chr4 3795382 3795588 -151834532 - Tigger5 DNA MER2_type -11 2395 2174 6 613 505 272 165 23 chr4 3795592 3795810 -151834310 - MER2 DNA MER2_type -5 340 92 6 613 764 154 6 139 chr4 3796984 3797150 -151832970 - B1_Mur4 SINE Alu 0 150 7 6 613 735 165 128 42 chr4 3797322 3797650 -151832470 + RMER10A LTR ERVL 4 422 -20 6 613 243 294 22 45 chr4 3800887 3800976 -151829144 - Tigger5 DNA MER2_type -23 2383 2297 6 614 381 280 72 0 chr4 3803984 3804109 -151826011 - B1F SINE Alu -15 134 1 6 614 436 259 206 0 chr4 3804806 3804937 -151825183 + RSINE1 SINE B4 8 165 0 6 614 620 245 111 11 chr4 3804977 3805167 -151824953 - B3 SINE B2 -7 209 1 6 614 757 233 12 36 chr4 3805217 3805382 -151824738 - RSINE1 SINE B4 0 165 5 6 614 180 0 0 0 chr4 3805393 3805413 -151824707 + (T)n Simple_repeat Simple_repeat 1 20 0 6 614 390 42 0 0 chr4 3805859 3805907 -151824213 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 614 414 0 0 0 chr4 3805911 3805957 -151824163 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 614 302 256 58 98 chr4 3807086 3807259 -151822861 - L1M4c LINE L1 -5199 1185 1020 6 614 848 168 16 10 chr4 3807329 3807504 -151822616 + MTC LTR MaLR 241 421 0 6 614 434 249 118 23 chr4 3807561 3807824 -151822296 + L1M5 LINE L1 3715 4002 -2144 6 614 296 273 13 13 chr4 3808153 3808231 -151821889 + ID2 SINE ID 4 81 -2 6 614 1216 272 26 28 chr4 3808313 3808737 -151821383 + Lx8 LINE L1 6123 6545 -928 6 614 344 301 71 50 chr4 3808743 3808765 -151821355 + ID_B1 SINE B4 64 206 -18 6 614 534 256 68 8 chr4 3808765 3808883 -151821237 + B1_Mur1 SINE Alu 7 131 -18 6 614 1065 58 73 0 chr4 3808914 3809051 -151821069 - B1_Mus1 SINE Alu 0 148 2 6 614 220 254 0 0 chr4 3809066 3809133 -151820987 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 6 614 1107 216 5 0 chr4 3809197 3809401 -151820719 + B3 SINE B2 1 205 -11 6 614 514 258 151 14 chr4 3809402 3809799 -151820321 + L1MC LINE L1 4983 5425 -2570 6 614 1111 105 0 0 chr4 3809802 3809954 -151820166 + B2_Mm2 SINE B2 2 153 -42 6 614 335 105 18 0 chr4 3809954 3810011 -151820109 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 614 389 279 105 15 chr4 3810433 3810633 -151819487 + L1MEb LINE L1 254 471 -5599 6 614 582 191 345 0 chr4 3810700 3810868 -151819252 - URR1A DNA MER1_type 0 226 1 6 614 220 229 42 28 chr4 3811122 3811194 -151818926 + ID4 SINE ID 3 75 -8 6 614 239 343 10 20 chr4 3811604 3811705 -151818415 + CT-rich Low_complexity Low_complexity 5 104 0 6 614 1226 149 78 41 chr4 3811711 3812004 -151818116 - Lx7 LINE L1 0 7696 7393 6 614 2700 138 142 31 chr4 3812000 3812555 -151817565 - L1_Mur3 LINE L1 -658 5222 4599 6 614 315 49 0 0 chr4 3812555 3812596 -151817524 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 614 2700 138 142 31 chr4 3812596 3812651 -151817469 - L1_Mur3 LINE L1 -1282 4598 4544 6 614 3208 141 21 23 chr4 3812653 3813616 -151816504 - L1Md_F LINE L1 -4360 1523 522 6 614 257 174 157 14 chr4 3813787 3813857 -151816263 - L1VL1 LINE L1 -6147 275 196 6 614 11423 158 49 131 chr4 3813859 3814147 -151815973 - L1_Mur2 LINE L1 -86 5791 5471 6 614 450 0 0 0 chr4 3814147 3814197 -151815923 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 614 11423 158 49 131 chr4 3814197 3814531 -151815589 - L1_Mur2 LINE L1 -407 5470 5125 6 614 3033 41 26 0 chr4 3814531 3814922 -151815198 + RLTR10A LTR ERVK 11 411 0 6 614 11423 158 49 131 chr4 3814922 3817151 -151812969 - L1_Mur2 LINE L1 -407 5124 2814 6 614 1193 122 28 12 chr4 3817151 3817399 -151812721 - L1_Mur2 LINE L1 -3632 2248 1997 6 614 593 160 76 13 chr4 3817383 3817541 -151812579 - L1_Mur2 LINE L1 -4235 1645 1478 6 614 1047 204 24 0 chr4 3818875 3819081 -151811039 + B3 SINE B2 2 212 -4 6 614 346 278 77 66 chr4 3819233 3819414 -151810706 + L1M5 LINE L1 5291 5473 -651 6 614 1914 204 115 7 chr4 3819460 3819895 -151810225 + MT2A LTR ERVL 42 523 -10 6 614 219 122 0 47 chr4 3820391 3820434 -151809686 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 614 399 89 0 0 chr4 3820446 3820502 -151809618 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 6 614 225 314 124 71 chr4 3820650 3820876 -151809244 + MTEb LTR MaLR 66 303 -81 6 614 316 277 227 25 chr4 3820932 3821095 -151809025 + Tigger5 DNA MER2_type 39 234 -2172 6 614 257 284 73 12 chr4 3821269 3821351 -151808769 + L2a LINE L2 3340 3426 0 6 614 452 301 42 20 chr4 3821483 3821637 -151808483 + MTEb LTR MaLR 251 419 0 6 614 1009 144 11 22 chr4 3821831 3822009 -151808111 - B2_Mm2 SINE B2 -19 176 1 6 614 207 0 0 0 chr4 3822355 3822378 -151807742 + (T)n Simple_repeat Simple_repeat 1 23 0 6 614 565 42 211 0 chr4 3822756 3822851 -151807269 + L1Md_F2 LINE L1 6455 6569 -13 6 614 600 295 57 26 chr4 3823494 3823759 -151806361 - B4A SINE B4 -18 274 2 6 614 375 296 211 15 chr4 3824149 3824410 -151805710 - MLT2D LTR ERVL -10 404 93 6 614 631 267 89 0 chr4 3825167 3825313 -151804807 - B3 SINE B2 -57 159 1 6 614 256 258 188 8 chr4 3825432 3825565 -151804555 + Lx8 LINE L1 7274 7430 -43 6 614 303 96 0 0 chr4 3826161 3826213 -151803907 + (A)n Simple_repeat Simple_repeat 1 52 0 6 614 564 178 0 0 chr4 3828428 3828535 -151801585 + (TA)n Simple_repeat Simple_repeat 2 108 0 6 614 1017 128 201 11 chr4 3834000 3834189 -151795931 - URR1A DNA MER1_type 0 226 2 6 614 228 67 0 0 chr4 3836164 3836194 -151793926 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 6 614 1283 27 0 0 chr4 3837968 3838114 -151792006 - B1_Mm SINE Alu -1 146 1 6 614 40 0 0 0 chr4 3838183 3838223 -151791897 + AT_rich Low_complexity Low_complexity 1 40 0 6 614 840 153 0 49 chr4 3841663 3841807 -151788313 - B1_Mur3 SINE Alu -12 137 1 6 614 202 193 35 0 chr4 3844575 3844632 -151785488 + GA-rich Low_complexity Low_complexity 3 61 0 6 614 271 195 25 38 chr4 3844645 3844725 -151785395 + GA-rich Low_complexity Low_complexity 3 81 0 6 614 1217 223 87 65 chr4 3844727 3845096 -151785024 - MTE2b LTR MaLR -2 377 1 6 614 1180 63 0 0 chr4 3845406 3845549 -151784571 + B1_Mus1 SINE Alu 1 143 -5 6 614 186 103 0 0 chr4 3845561 3845590 -151784530 + (A)n Simple_repeat Simple_repeat 1 29 0 6 614 234 196 22 0 chr4 3845766 3845812 -151784308 + GA-rich Low_complexity Low_complexity 2 48 0 6 614 759 195 0 45 chr4 3845931 3846087 -151784033 + B1_Mur4 SINE Alu 2 150 0 6 614 566 264 82 54 chr4 3846206 3846390 -151783730 - B3A SINE B2 -7 191 3 6 614 25 31 0 0 chr4 3846543 3846575 -151783545 + AT_rich Low_complexity Low_complexity 1 32 0 6 614 410 351 54 14 chr4 3846576 3846856 -151783264 + L1MD LINE L1 4891 5181 -965 7 614 297 246 39 39 chr4 3847207 3847221 -151782899 + L1ME1 LINE L1 5328 5341 -959 7 614 720 242 42 47 chr4 3847221 3847412 -151782708 + B3A SINE B2 1 190 -8 7 614 673 281 85 44 chr4 3847412 3847970 -151782150 + L1ME1 LINE L1 5342 5929 -250 7 614 32 57 0 0 chr4 3848277 3848330 -151781790 + AT_rich Low_complexity Low_complexity 1 53 0 7 614 490 233 58 0 chr4 3848767 3848887 -151781233 + Tigger5 DNA MER2_type 2135 2261 -145 7 614 213 39 0 0 chr4 3850010 3850036 -151780084 + (TATG)n Simple_repeat Simple_repeat 1 26 0 7 614 588 238 32 8 chr4 3850039 3850162 -151779958 - RSINE1 SINE B4 0 165 40 7 614 558 264 0 39 chr4 3850367 3850497 -151779623 + RSINE1 SINE B4 3 127 -38 7 614 360 0 0 0 chr4 3854614 3854654 -151775466 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 7 614 414 0 0 0 chr4 3855001 3855047 -151775073 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 614 24 0 0 0 chr4 3855576 3855600 -151774520 + AT_rich Low_complexity Low_complexity 1 24 0 7 614 215 250 18 0 chr4 3856206 3856262 -151773858 + MIRc SINE MIR 163 219 -49 7 614 288 0 0 0 chr4 3856440 3856472 -151773648 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 614 243 0 0 0 chr4 3856472 3856498 -151773622 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 614 188 0 0 69 chr4 3859872 3859901 -151770219 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 614 22 35 0 0 chr4 3863182 3863211 -151766909 + AT_rich Low_complexity Low_complexity 1 29 0 7 614 24 0 0 0 chr4 3864395 3864419 -151765701 + AT_rich Low_complexity Low_complexity 1 24 0 7 614 207 0 0 0 chr4 3865012 3865035 -151765085 + (GGA)n Simple_repeat Simple_repeat 2 24 0 7 614 22 35 0 0 chr4 3865169 3865198 -151764922 + AT_rich Low_complexity Low_complexity 1 29 0 7 614 340 153 7 55 chr4 3865541 3865686 -151764434 + C-rich Low_complexity Low_complexity 4 141 0 7 614 234 0 0 0 chr4 3867869 3867895 -151762225 + (T)n Simple_repeat Simple_repeat 1 26 0 7 614 208 135 0 0 chr4 3870675 3870712 -151759408 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 7 614 222 276 35 0 chr4 3871667 3871725 -151758395 - PB1D7 SINE Alu -41 79 20 7 614 482 213 283 23 chr4 3871789 3872004 -151758116 + Lx6 LINE L1 6592 6899 -797 7 614 1096 205 179 29 chr4 3872093 3872444 -151757676 + RMER10A LTR ERVL 33 436 -6 7 614 387 191 179 62 chr4 3873155 3873171 -151756949 - ID_B1 SINE B4 -10 214 204 7 614 387 41 0 0 chr4 3873171 3873220 -151756900 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 614 387 191 179 62 chr4 3873220 3873315 -151756805 - ID_B1 SINE B4 -21 203 90 7 614 1179 61 0 7 chr4 3873664 3873812 -151756308 + B1_Mus2 SINE Alu 1 147 0 7 614 630 262 78 50 chr4 3874069 3874426 -151755694 - L1M4 LINE L1 -1036 5110 4744 7 614 332 270 45 0 chr4 3874572 3874660 -151755460 - B4 SINE B4 -114 178 87 7 614 1010 244 149 48 chr4 3874660 3874832 -151755288 + ORR1D2 LTR MaLR 1 163 -207 7 614 231 36 0 0 chr4 3874832 3874860 -151755260 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 614 1010 244 149 48 chr4 3874860 3875023 -151755097 + ORR1D2 LTR MaLR 164 370 0 7 614 498 17 0 0 chr4 3875139 3875198 -151754922 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 614 420 227 93 0 chr4 3875350 3875447 -151754673 - PB1D10 SINE Alu -11 106 1 7 614 21 36 0 0 chr4 3875639 3875667 -151754453 + AT_rich Low_complexity Low_complexity 1 28 0 7 614 707 299 80 18 chr4 3876000 3876388 -151753732 - Lx7 LINE L1 -516 7180 6769 7 614 237 306 0 35 chr4 3876464 3876579 -151753541 + T-rich Low_complexity Low_complexity 2 112 0 7 614 905 295 113 12 chr4 3876821 3877486 -151752634 + L1M2 LINE L1 2881 3612 -2531 7 614 221 238 0 0 chr4 3877629 3877671 -151752449 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 614 810 203 0 0 chr4 3878554 3878692 -151751428 + B1_Mur4 SINE Alu 2 139 -11 7 614 548 29 14 0 chr4 3879187 3879257 -151750863 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 614 510 17 0 0 chr4 3882530 3882589 -151747531 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 614 420 310 52 0 chr4 3882601 3882717 -151747403 - B4 SINE B4 -51 241 120 7 614 215 289 72 68 chr4 3883752 3884001 -151746119 - L2a LINE L2 -76 3350 3101 7 614 27 29 0 0 chr4 3884082 3884116 -151746004 + AT_rich Low_complexity Low_complexity 1 34 0 7 614 2330 48 3 3 chr4 3884116 3884408 -151745712 - L1_Mus1 LINE L1 -2 6565 6274 7 614 1102 266 47 23 chr4 3887424 3887435 -151742685 - B4A SINE B4 0 292 283 7 614 787 20 20 0 chr4 3887435 3887536 -151742584 + (GA)n Simple_repeat Simple_repeat 1 103 0 7 614 1102 266 47 23 chr4 3887536 3887782 -151742338 - B4A SINE B4 -10 282 29 7 614 5081 164 36 14 chr4 3889517 3890397 -151739723 - RMER19B LTR ERVK 0 902 3 7 614 330 138 0 0 chr4 3890399 3890457 -151739663 + (GGA)n Simple_repeat Simple_repeat 3 60 0 7 614 190 281 35 0 chr4 3891588 3891645 -151738475 + MIRm SINE MIR 80 138 -138 7 614 235 290 32 0 chr4 3892107 3892169 -151737951 - MIR3 SINE MIR -7 201 138 7 614 597 302 110 46 chr4 3893072 3893687 -151736433 - L1MC4 LINE L1 0 8042 7402 7 614 213 39 0 0 chr4 3894600 3894626 -151735494 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 614 430 239 195 32 chr4 3894986 3895176 -151734944 + Lx9 LINE L1 7407 7627 -17 7 614 370 327 12 61 chr4 3895215 3895378 -151734742 + RSINE1 SINE B4 3 157 -8 7 614 820 218 113 31 chr4 3895875 3896034 -151734086 + B3 SINE B2 4 166 -50 7 614 365 91 30 0 chr4 3896034 3896100 -151734020 + (CATA)n Simple_repeat Simple_repeat 3 70 0 7 614 820 218 113 31 chr4 3896100 3896134 -151733986 + B3 SINE B2 167 212 -4 7 614 257 0 30 0 chr4 3896182 3896215 -151733905 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 614 496 253 204 14 chr4 3896218 3896420 -151733700 - B4A SINE B4 -54 238 5 7 614 1016 194 0 17 chr4 3896795 3896973 -151733147 - B3 SINE B2 -6 210 36 7 614 743 67 19 0 chr4 3897010 3897115 -151733005 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 7 614 924 177 0 0 chr4 3897117 3897264 -151732856 - B1_Mur1 SINE Alu 0 149 3 7 614 284 269 38 13 chr4 3897341 3897420 -151732700 - ID4 SINE ID 0 83 3 7 614 26 0 0 0 chr4 3897497 3897523 -151732597 + AT_rich Low_complexity Low_complexity 1 26 0 7 614 308 221 29 29 chr4 3897617 3897687 -151732433 - Lx8 LINE L1 -148 7325 7256 7 614 425 244 256 0 chr4 3898668 3898832 -151731288 + B3 SINE B2 1 206 -10 7 614 728 50 20 0 chr4 3899160 3899260 -151730860 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 7 614 480 312 112 20 chr4 3899289 3899485 -151730635 - MER58A DNA MER1_type -2 222 9 7 614 428 0 0 19 chr4 3899759 3899812 -151730308 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 614 216 0 0 0 chr4 3900240 3900264 -151729856 + (T)n Simple_repeat Simple_repeat 1 24 0 7 614 335 238 230 23 chr4 3901283 3901505 -151728615 + L1MA7 LINE L1 6018 6285 -6 7 614 453 254 43 26 chr4 3901520 3901637 -151728483 + PB1D9 SINE Alu 2 120 0 7 614 219 114 0 0 chr4 3903101 3903136 -151726984 + (TCC)n Simple_repeat Simple_repeat 3 37 0 7 614 279 250 135 0 chr4 3903679 3903775 -151726345 + B3A SINE B2 1 109 -89 7 614 427 312 74 53 chr4 3904063 3904389 -151725731 + MER47B DNA MER2_type 4 418 0 7 614 417 174 0 0 chr4 3904416 3904514 -151725606 + (CA)n Simple_repeat Simple_repeat 1 98 0 7 614 260 279 38 12 chr4 3904603 3904683 -151725437 + MLT1A1 LTR MaLR 3 84 -324 7 614 213 39 0 0 chr4 3905164 3905190 -151724930 + (T)n Simple_repeat Simple_repeat 1 26 0 7 614 213 39 0 0 chr4 3905323 3905349 -151724771 + (T)n Simple_repeat Simple_repeat 1 26 0 7 614 378 195 0 0 chr4 3907544 3907626 -151722494 + (TA)n Simple_repeat Simple_repeat 1 82 0 7 614 547 298 17 64 chr4 3907737 3907909 -151722211 - RSINE1 SINE B4 0 165 2 7 614 950 186 20 41 chr4 3908384 3908580 -151721540 - B2_Mm2 SINE B2 0 195 4 7 614 216 67 0 0 chr4 3909675 3909705 -151720415 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 614 534 118 0 0 chr4 3909853 3909955 -151720165 + (TC)n Simple_repeat Simple_repeat 2 103 0 7 614 691 266 43 29 chr4 3909962 3910171 -151719949 + B3 SINE B2 1 212 -4 7 614 390 21 0 0 chr4 3910173 3910220 -151719900 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 614 277 330 36 0 chr4 3910252 3910364 -151719756 + PB1D10 SINE Alu 2 117 0 7 614 242 262 14 58 chr4 3910364 3910433 -151719687 + ID2 SINE ID 4 69 -14 7 614 336 143 0 0 chr4 3911323 3911379 -151718741 + (GGGAA)n Simple_repeat Simple_repeat 4 59 0 7 614 2939 145 247 110 chr4 3911718 3912515 -151717605 - RMER17A2 LTR ERVK 0 906 1 7 614 1199 305 14 35 chr4 3912602 3912972 -151717148 - MER82 DNA MER2_type -1 652 291 7 614 561 255 41 0 chr4 3913011 3913156 -151716964 - MER82 DNA MER2_type -469 184 34 7 614 1200 277 95 63 chr4 3913286 3914380 -151715740 + Lx8 LINE L1 5373 6434 -1039 7 614 1732 217 114 64 chr4 3914390 3914940 -151715180 - RMER4B LTR ERVK -7 578 1 7 614 330 231 32 42 chr4 3915057 3915152 -151714968 - L1MD LINE L1 -2953 3193 3100 7 614 333 0 0 0 chr4 3915352 3915389 -151714731 + (T)n Simple_repeat Simple_repeat 1 37 0 7 614 23 33 0 0 chr4 3915464 3915494 -151714626 + AT_rich Low_complexity Low_complexity 1 30 0 7 614 402 270 72 24 chr4 3915494 3915703 -151714417 - L1MA5 LINE L1 -363 5937 5719 7 614 909 285 5 0 chr4 3915884 3916091 -151714029 - B3 SINE B2 -8 208 1 7 614 432 0 0 0 chr4 3916416 3916464 -151713656 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 7 614 1229 88 0 0 chr4 3916464 3916624 -151713496 - B2_Mm2 SINE B2 -34 161 2 8 614 403 233 200 0 chr4 3917775 3917925 -151712195 + MTEa LTR MaLR 181 360 -19 8 614 223 204 0 20 chr4 3917955 3918005 -151712115 + CT-rich Low_complexity Low_complexity 4 52 0 8 614 828 171 27 0 chr4 3918591 3918737 -151711383 - RLTR42-int LTR ERVK -4268 1254 1105 8 614 543 225 83 30 chr4 3919918 3920116 -151710004 + MLT1A LTR MaLR 3 213 -152 8 614 246 256 36 60 chr4 3920134 3920217 -151709903 + MLT1A LTR MaLR 290 370 -4 8 614 673 277 140 52 chr4 3921747 3922033 -151708087 + MTE2a LTR MaLR 69 379 0 8 614 2438 29 0 0 chr4 3922300 3922575 -151707545 - L1Md_F2 LINE L1 -259 6323 6049 8 614 2118 41 4 0 chr4 3922575 3922821 -151707299 + L1Md_F2 LINE L1 6334 6580 -2 8 614 441 0 0 0 chr4 3922963 3923012 -151707108 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 614 186 320 135 39 chr4 3923644 3923800 -151706320 + MIRb SINE MIR 29 199 -69 8 614 1405 85 0 25 chr4 3925010 3925214 -151704906 + L1Md_F2 LINE L1 6384 6582 0 8 614 31778 109 15 8 chr4 3925237 3931376 -151698744 + L1_Mus1 LINE L1 387 6654 0 8 614 256 202 0 43 chr4 3931378 3931471 -151698649 + A-rich Low_complexity Low_complexity 1 89 0 8 614 750 87 31 8 chr4 3931868 3931996 -151698124 + (TTCC)n Simple_repeat Simple_repeat 2 132 0 8 614 234 0 0 0 chr4 3932002 3932028 -151698092 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 615 277 82 0 62 chr4 3932371 3932436 -151697684 + L1Md_F3 LINE L1 6524 6584 0 8 615 450 259 61 78 chr4 3933044 3933224 -151696896 + MLT1A0 LTR MaLR 1 177 -188 8 615 974 9 9 0 chr4 3933877 3933992 -151696128 + (GA)n Simple_repeat Simple_repeat 2 117 0 8 615 519 249 19 69 chr4 3934116 3934165 -151695955 + Tigger1 DNA MER2_type 2180 2222 -196 8 615 2176 159 117 0 chr4 3934165 3934542 -151695578 + MTC LTR MaLR 1 421 0 8 615 519 249 19 69 chr4 3934542 3934708 -151695412 + Tigger1 DNA MER2_type 2223 2384 -34 8 615 2302 157 3 0 chr4 3935245 3935590 -151694530 - ORR1A1 LTR MaLR 0 346 1 8 615 342 322 26 57 chr4 3935671 3935865 -151694255 + MTEb LTR MaLR 171 358 -21 8 615 1338 98 17 0 chr4 3936293 3936467 -151693653 + B2_Mm2 SINE B2 1 177 -18 8 615 236 30 30 0 chr4 3936470 3936503 -151693617 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 615 291 330 61 6 chr4 3937167 3937266 -151692854 + B1F2 SINE Alu 5 105 -12 8 615 486 0 0 0 chr4 3937266 3937320 -151692800 + (CAAAC)n Simple_repeat Simple_repeat 4 57 0 8 615 26 64 0 0 chr4 3937651 3937698 -151692422 + AT_rich Low_complexity Low_complexity 1 47 0 8 615 192 77 0 0 chr4 3937776 3937802 -151692318 + (CATA)n Simple_repeat Simple_repeat 2 27 0 8 615 441 158 0 0 chr4 3938270 3938352 -151691768 + (CA)n Simple_repeat Simple_repeat 2 83 0 8 615 316 355 19 19 chr4 3938829 3938984 -151691136 - RMER12 LTR ERVK -466 856 702 8 615 188 192 38 19 chr4 3939473 3939526 -151690594 - L3 LINE CR1 -1902 2587 2534 8 615 456 262 0 0 chr4 3940428 3940596 -151689524 + (TG)n Simple_repeat Simple_repeat 2 169 0 8 615 1578 123 16 8 chr4 3942143 3942397 -151687723 + Lx2A LINE L1 6753 7008 0 8 615 483 128 0 0 chr4 3942399 3942485 -151687635 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 8 615 280 245 19 0 chr4 3942485 3942538 -151687582 - URR1B DNA MER1_type -171 54 1 8 615 210 338 0 48 chr4 3942546 3942630 -151687490 + ID2 SINE ID 2 81 -2 8 615 295 224 0 69 chr4 3943994 3944066 -151686054 + ID4 SINE ID 3 69 -14 8 615 552 116 0 0 chr4 3948357 3948452 -151681668 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 615 252 238 0 31 chr4 3950513 3950578 -151679542 + T-rich Low_complexity Low_complexity 2 64 0 8 615 250 314 0 0 chr4 3951625 3951711 -151678409 + MLT1A1 LTR MaLR 310 395 -13 8 615 6119 25 10 0 chr4 3951787 3952496 -151677624 - L1Md_F2 LINE L1 -13 6569 5854 8 615 272 256 58 0 chr4 3953139 3953225 -151676895 + MLT1A1 LTR MaLR 306 396 -12 8 615 2079 207 10 8 chr4 3953397 3953781 -151676339 - Lx5 LINE L1 -3 7047 6663 8 615 2733 149 7 29 chr4 3953787 3954334 -151675786 + L1_Mur2 LINE L1 3065 3599 -2278 8 615 2365 170 33 12 chr4 3954425 3955320 -151674800 - L1_Mur2 LINE L1 -4136 1741 806 8 615 4257 65 0 7 chr4 3955364 3955934 -151674186 + L1Md_F2 LINE L1 5985 6550 -32 8 615 33874 49 5 15 chr4 3955931 3961098 -151669022 + L1Md_A LINE L1 479 5586 -297 8 615 8274 38 2 0 chr4 3961098 3962092 -151668028 + L1Md_A LINE L1 5587 6582 0 8 615 495 308 19 31 chr4 3962272 3962433 -151667687 - RSINE1 SINE B4 -4 161 3 8 615 439 301 180 63 chr4 3962556 3963000 -151667120 + L1ME3A LINE L1 5678 6173 0 8 615 455 376 56 11 chr4 3963038 3963072 -151667048 - B3A SINE B2 -6 192 157 8 615 348 24 0 0 chr4 3963072 3963113 -151667007 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 615 455 376 56 11 chr4 3963113 3963258 -151666862 - B3A SINE B2 -42 156 6 8 615 183 129 0 0 chr4 3963275 3963306 -151666814 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 8 615 1849 165 75 19 chr4 3964499 3964870 -151665250 + MTB LTR MaLR 1 392 -8 8 615 1153 65 0 0 chr4 3964873 3965011 -151665109 + B1_Mus2 SINE Alu 1 138 -9 8 615 342 0 0 0 chr4 3965011 3965049 -151665071 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 615 282 325 157 18 chr4 3965144 3965310 -151664810 - ORR1D2 LTR MaLR -181 189 1 8 615 342 318 7 29 chr4 3965758 3965894 -151664226 + MIRb SINE MIR 69 201 -67 8 615 1324 311 61 97 chr4 3966351 3966931 -151663189 + MER45R DNA Tip100 38 592 -989 8 615 1011 85 50 0 chr4 3966931 3967072 -151663048 + B1_Mus1 SINE Alu 1 148 0 8 615 1324 311 61 97 chr4 3967072 3967274 -151662846 + MER45R DNA Tip100 593 792 -789 8 615 315 104 0 0 chr4 3967277 3967325 -151662795 + (CTAA)n Simple_repeat Simple_repeat 3 50 0 8 615 35884 57 7 5 chr4 3967325 3973641 -151656479 - L1Md_T LINE L1 -18 7035 651 8 615 1992 214 64 8 chr4 3973628 3974114 -151656006 - Lx5 LINE L1 -526 6524 6012 8 615 508 274 307 14 chr4 3974115 3974600 -151655520 + MER45R DNA Tip100 761 1387 -194 8 615 582 15 0 0 chr4 3974614 3974681 -151655439 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 615 7861 86 3 21 chr4 3974681 3976620 -151653500 - L1Md_Gf LINE L1 -4219 1667 1 8 615 531 122 0 0 chr4 3976620 3976702 -151653418 + Lx3C LINE L1 5792 5873 -1103 8 615 4118 219 38 14 chr4 3976697 3977662 -151652458 + Lx5 LINE L1 5925 6912 -138 8 615 266 89 44 0 chr4 3977806 3977851 -151652269 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 615 225 94 0 0 chr4 3979500 3979532 -151650588 + (CCA)n Simple_repeat Simple_repeat 1 32 0 8 615 7200 53 32 0 chr4 3979588 3980592 -151649528 - L1Md_F2 LINE L1 -9 6573 5538 8 615 5412 64 1 1 chr4 3980590 3981327 -151648793 + L1Md_F2 LINE L1 4801 5537 -346 8 615 545 314 48 5 chr4 3981519 3981708 -151648412 + MER2B DNA MER2_type 48 244 -92 8 615 563 278 112 25 chr4 3982140 3982380 -151647740 + LTR87 LTR ERVL? 361 621 -3 8 615 246 347 82 0 chr4 3983630 3983728 -151646392 + PB1D10 SINE Alu 12 117 0 8 615 239 299 56 28 chr4 3986110 3986323 -151643797 - L1M4b LINE L1 -3316 3690 3472 8 615 384 231 56 0 chr4 3986399 3986542 -151643578 - L1M4b LINE L1 -4259 3075 2925 8 615 313 148 211 31 chr4 3986817 3986925 -151643195 - L1M4b LINE L1 -4866 2468 2333 8 615 941 124 35 61 chr4 3986925 3987123 -151642997 - B2_Mm2 SINE B2 0 195 3 8 615 353 222 398 22 chr4 3987123 3987332 -151642788 - L1M4b LINE L1 -5002 2332 2053 8 615 2601 142 112 31 chr4 3987741 3988251 -151641869 - RMER4B LTR ERVK -34 551 1 8 615 4560 46 5 7 chr4 3988564 3989133 -151640987 + L1Md_F2 LINE L1 6003 6570 -12 8 615 38 39 0 0 chr4 3989524 3989576 -151640544 + AT_rich Low_complexity Low_complexity 1 52 0 8 615 525 16 0 0 chr4 3990105 3990167 -151639953 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 615 233 283 15 98 chr4 3990804 3990937 -151639183 + Tigger6b DNA MER2_type 762 883 -714 8 615 776 266 39 35 chr4 3992251 3992508 -151637612 - Tigger7 DNA MER2_type 0 2491 2235 8 615 750 319 79 0 chr4 3992555 3992796 -151637324 - Tigger7 DNA MER2_type -2120 371 112 8 615 751 273 44 54 chr4 3992998 3993026 -151637094 - B4A SINE B4 0 292 268 8 615 227 79 26 0 chr4 3993026 3993064 -151637056 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 615 751 273 44 54 chr4 3993064 3993329 -151636791 - B4A SINE B4 -25 267 2 8 615 2192 165 5 5 chr4 3993904 3994281 -151635839 + RLTR14 LTR ERV1 3 379 -3 8 615 689 104 9 9 chr4 3994436 3994552 -151635568 + Lx LINE L1 6539 6654 0 8 615 788 301 77 13 chr4 3994630 3994790 -151635330 - MER2 DNA MER2_type -20 325 166 8 615 188 111 28 0 chr4 3994790 3994826 -151635294 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 615 788 301 77 13 chr4 3994826 3994965 -151635155 - MER2 DNA MER2_type -180 165 7 8 615 26 30 0 0 chr4 3996710 3996743 -151633377 + AT_rich Low_complexity Low_complexity 1 33 0 8 615 645 276 82 0 chr4 3997558 3997754 -151632366 - Lx9 LINE L1 -1126 6518 6307 8 615 1829 222 40 37 chr4 3997922 3998440 -151631680 + Lx9 LINE L1 6565 7084 -560 8 615 267 207 45 45 chr4 3998437 3998525 -151631595 + Lx9 LINE L1 7199 7372 -272 8 615 288 0 0 0 chr4 3998541 3998573 -151631547 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 615 225 265 0 0 chr4 3998836 3998885 -151631235 - MER77 LTR ERVL -247 360 312 8 615 212 143 24 0 chr4 3999180 3999222 -151630898 + CT-rich Low_complexity Low_complexity 4 46 0 8 615 268 364 13 0 chr4 3999226 3999303 -151630817 - ID4_ SINE ID -4 79 2 8 615 329 284 10 10 chr4 3999356 3999452 -151630668 - PB1D10 SINE Alu -21 96 1 8 615 973 24 65 0 chr4 4000007 4000176 -151629944 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 615 3069 71 32 0 chr4 4000832 4001241 -151628879 - L1_Mus3 LINE L1 -7 6631 6210 2 615 1006 47 0 0 chr4 4001241 4001369 -151628751 + L1_Mus3 LINE L1 6081 6208 -430 2 615 305 350 18 72 chr4 4001369 4001480 -151628640 - PB1D10 SINE Alu -22 105 1 3 615 236 377 0 56 chr4 4001480 4001516 -151628604 - ID SINE ID -143 81 57 4 615 193 333 25 0 chr4 4001997 4002078 -151628042 + MIR SINE MIR 84 166 -96 5 615 227 372 32 39 chr4 4002498 4002652 -151627468 + MIRm SINE MIR 30 182 -94 6 615 451 369 78 24 chr4 4002752 4003102 -151627018 + MER74C LTR ERVL 1 449 -109 7 615 1730 196 102 16 chr4 4004494 4004878 -151625242 - MTD LTR MaLR 0 419 3 8 615 1340 86 5 5 chr4 4005213 4005400 -151624720 - B2_Mm2 SINE B2 -8 187 1 9 615 4060 77 6 2 chr4 4006744 4007279 -151622841 + L1_Mus3 LINE L1 6083 6619 -19 1 615 408 40 0 0 chr4 4007279 4007329 -151622791 + (TAA)n Simple_repeat Simple_repeat 3 52 0 1 615 1733 204 87 8 chr4 4007816 4008206 -151621914 + MTC LTR MaLR 1 421 0 1 615 341 299 177 32 chr4 4009350 4009599 -151620521 - L1MC1 LINE L1 -198 6135 5851 1 615 11822 53 3 0 chr4 4009920 4011470 -151618650 + L1Md_F3 LINE L1 4033 5586 -297 1 615 7988 43 6 8 chr4 4011470 4012469 -151617651 + L1Md_F3 LINE L1 5587 6583 -1 1 615 1973 209 34 24 chr4 4012571 4013072 -151617048 - L1_Mur3 LINE L1 -628 5252 4747 1 615 5746 218 23 56 chr4 4013047 4014541 -151615579 - Lx7 LINE L1 -87 7609 6164 1 615 728 180 13 7 chr4 4014550 4014701 -151615419 - Lx6 LINE L1 -1529 5931 5780 1 615 3783 262 106 13 chr4 4014688 4015814 -151614306 - Lx6 LINE L1 0 7460 6231 1 615 6986 149 54 48 chr4 4015816 4017245 -151612875 - Lx6 LINE L1 -940 4940 3499 1 615 2974 88 5 2 chr4 4017245 4017644 -151612476 - MTB LTR MaLR 0 400 1 1 615 6986 149 54 48 chr4 4017644 4017662 -151612458 - Lx6 LINE L1 -2382 3498 3484 1 615 852 96 0 0 chr4 4017662 4017808 -151612312 + (TCTCCC)n Simple_repeat Simple_repeat 5 150 0 2 615 6986 149 54 48 chr4 4017808 4017936 -151612184 - Lx6 LINE L1 -2397 3483 3355 1 615 34840 65 2 13 chr4 4017929 4024074 -151606046 - L1Md_F2 LINE L1 0 6582 508 2 615 301 91 0 0 chr4 4024072 4024116 -151606004 - Lx6 LINE L1 -2510 3370 3327 1 615 2021 267 38 4 chr4 4024113 4024870 -151605250 - L1_Mur3 LINE L1 -7052 660 1 2 615 643 184 61 0 chr4 4024889 4025052 -151605068 - Lx6 LINE L1 -4159 1721 1549 1 615 1328 196 17 73 chr4 4025049 4025461 -151604659 - Lx6 LINE L1 -6432 1296 908 1 615 24694 114 87 8 chr4 4025480 4031368 -151598752 - L1_Mus1 LINE L1 -2 6565 182 2 615 744 251 26 9 chr4 4031382 4031611 -151598509 - Lx6 LINE L1 -7166 562 330 1 615 1037 271 31 97 chr4 4031608 4032511 -151597609 - L1_Mur3 LINE L1 -4159 1721 871 2 615 183 42 0 0 chr4 4032822 4032846 -151597274 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 615 372 152 0 0 chr4 4033417 4033483 -151596637 + (CAAAC)n Simple_repeat Simple_repeat 2 67 0 2 615 215 237 73 73 chr4 4033889 4033971 -151596149 - L2b LINE L2 0 3375 3294 2 615 21 57 0 0 chr4 4034253 4034288 -151595832 + AT_rich Low_complexity Low_complexity 1 35 0 2 615 618 285 11 0 chr4 4034549 4034735 -151595385 + Lx9 LINE L1 6660 6847 -797 2 615 457 322 43 11 chr4 4035141 4035326 -151594794 - MER44A DNA MER2_type -139 200 10 3 615 991 277 69 13 chr4 4035415 4035792 -151594328 - Lx9 LINE L1 -300 7344 6947 3 615 7399 73 4 1 chr4 4035792 4036850 -151593270 + L1_Mus3 LINE L1 5615 6638 0 3 615 330 256 0 0 chr4 4036975 4037053 -151593067 - Lx9 LINE L1 -811 6833 6756 3 615 306 315 112 24 chr4 4037192 4037361 -151592759 - LTR33 LTR ERVL -1 514 331 3 615 311 283 52 52 chr4 4037710 4037863 -151592257 + ORR1E LTR MaLR 55 207 -152 3 615 2815 78 5 3 chr4 4038310 4038683 -151591437 - L1_Mus3 LINE L1 -8 6630 6257 3 615 514 125 0 0 chr4 4038718 4038806 -151591314 + Lx2 LINE L1 6553 6640 -357 3 615 1440 116 9 0 chr4 4038806 4039021 -151591099 + Lx2 LINE L1 6770 6986 -11 3 615 248 385 9 0 chr4 4039029 4039138 -151590982 + PB1D10 SINE Alu 6 115 -2 3 615 406 278 204 11 chr4 4040471 4040828 -151589292 + L1ME1 LINE L1 1453 1808 -4810 3 615 302 256 57 21 chr4 4040857 4040997 -151589123 + L1ME1 LINE L1 1884 2028 -4590 3 615 22 70 0 0 chr4 4041157 4041200 -151588920 + AT_rich Low_complexity Low_complexity 1 43 0 3 615 2059 317 90 26 chr4 4041356 4042401 -151587719 - Lx8 LINE L1 -181 7292 6181 4 615 300 219 0 30 chr4 4042766 4042832 -151587288 + MER45R DNA Tip100 608 671 -910 4 615 262 286 125 20 chr4 4043031 4043231 -151586889 + L1ME1 LINE L1 2107 2327 -4291 3 615 290 304 64 88 chr4 4043433 4043682 -151586438 + L1ME1 LINE L1 2559 2801 -3736 3 615 412 346 18 48 chr4 4043878 4044045 -151586075 + RSINE1 SINE B4 4 165 0 4 615 372 322 80 35 chr4 4044089 4044488 -151585632 + L1ME1 LINE L1 4232 4648 -1889 3 615 354 327 148 8 chr4 4044535 4044791 -151585329 + L1ME1 LINE L1 5973 6264 -306 3 615 463 355 47 83 chr4 4045330 4045825 -151584295 - L1MB7 LINE L1 0 6184 5708 4 615 231 352 0 14 chr4 4045926 4045998 -151584122 + RSINE1 SINE B4 2 72 -93 4 615 27 0 0 0 chr4 4046133 4046160 -151583960 + AT_rich Low_complexity Low_complexity 1 27 0 4 615 271 310 11 0 chr4 4046598 4046685 -151583435 + RMER30 DNA MER1_type 9 96 -106 4 615 3503 109 17 0 chr4 4046685 4047219 -151582901 - L1_Mm LINE L1 -116 5767 5225 4 615 2081 38 0 0 chr4 4047220 4047481 -151582639 - RLTR10-int LTR ERVK -1686 301 41 4 615 3233 26 13 10 chr4 4047491 4047880 -151582240 - RLTR10 LTR ERVK 0 390 1 4 615 8238 18 5 5 chr4 4047882 4048877 -151581243 - RLTR10-int LTR ERVK -3 1984 990 4 615 335 258 39 15 chr4 4048959 4049089 -151581031 - RLTR10-int LTR ERVK -5987 1594 1462 4 615 7508 35 11 8 chr4 4049153 4050108 -151580012 - RLTR10-int LTR ERVK -989 998 41 4 615 3233 26 13 10 chr4 4050118 4050507 -151579613 - RLTR10 LTR ERVK 0 390 1 4 615 5547 127 23 2 chr4 4050507 4051422 -151578698 - L1_Mm LINE L1 -654 5229 4296 5 615 6117 83 25 13 chr4 4051424 4052282 -151577838 + L1_Mus3 LINE L1 5765 6632 -6 5 615 27 49 0 0 chr4 4053151 4053192 -151576928 + AT_rich Low_complexity Low_complexity 1 41 0 5 615 201 129 0 0 chr4 4053255 4053286 -151576834 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 615 453 256 127 111 chr4 4053295 4053373 -151576747 - RMER30 DNA MER1_type -1 201 105 5 615 651 185 22 0 chr4 4053373 4053508 -151576612 + Lx7 LINE L1 7556 7693 -3 5 615 453 256 127 111 chr4 4053508 4053618 -151576502 - RMER30 DNA MER1_type -98 104 10 5 615 195 42 0 0 chr4 4053889 4053913 -151576207 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 615 1195 55 0 7 chr4 4053913 4054052 -151576068 - B1_Mus1 SINE Alu -9 139 1 5 615 598 184 232 0 chr4 4054153 4054321 -151575799 - B3 SINE B2 -9 207 1 5 615 5749 174 44 11 chr4 4054345 4055473 -151574647 - Lx4B LINE L1 -7 7051 5886 5 615 586 242 0 1 chr4 4056426 4056544 -151573576 + B1_Mur1 SINE Alu 3 119 -1 6 615 372 294 82 29 chr4 4057644 4057873 -151572247 - L1MC1 LINE L1 -25 6319 6073 6 615 323 265 34 136 chr4 4059331 4059449 -151570671 - PB1D10 SINE Alu -19 108 3 6 615 314 317 88 16 chr4 4059349 4059474 -151570646 - ID_B1 SINE B4 -33 191 58 6 615 217 380 28 9 chr4 4060349 4060458 -151569662 + MIR3 SINE MIR 12 122 -86 6 616 21 57 0 0 chr4 4063278 4063313 -151566807 + AT_rich Low_complexity Low_complexity 1 35 0 6 616 21 0 0 0 chr4 4063945 4063966 -151566154 + AT_rich Low_complexity Low_complexity 1 21 0 6 616 22 0 0 0 chr4 4064282 4064304 -151565816 + AT_rich Low_complexity Low_complexity 1 22 0 6 616 202 224 0 0 chr4 4066541 4066590 -151563530 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 6 616 450 0 0 0 chr4 4066703 4066753 -151563367 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 616 468 0 0 0 chr4 4067192 4067244 -151562876 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 616 211 205 0 0 chr4 4067914 4067953 -151562167 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 616 492 62 0 0 chr4 4067972 4068036 -151562084 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 7 616 253 181 308 19 chr4 4070336 4070443 -151559677 + L1MCa LINE L1 1587 1724 -4784 7 616 1498 284 87 6 chr4 4070692 4071351 -151558769 + L1MCa LINE L1 2615 3326 -2995 7 616 1275 303 110 9 chr4 4071534 4072171 -151557949 + L1MCa LINE L1 3301 4001 -2320 7 616 22 0 0 0 chr4 4072467 4072489 -151557631 + AT_rich Low_complexity Low_complexity 1 22 0 7 616 448 250 135 68 chr4 4073716 4073879 -151556241 - B3A SINE B2 0 198 25 7 616 24 32 0 0 chr4 4073988 4074019 -151556101 + AT_rich Low_complexity Low_complexity 1 31 0 7 616 243 0 0 0 chr4 4074182 4074209 -151555911 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 616 456 77 12 25 chr4 4074382 4074462 -151555658 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 7 616 3784 202 75 60 chr4 4075008 4075927 -151554193 - RMER1A Other Other -4 1026 94 7 616 481 226 237 57 chr4 4075956 4076167 -151553953 + Lx9 LINE L1 7381 7629 -15 8 616 309 247 20 79 chr4 4076334 4076382 -151553738 - B3 SINE B2 0 216 170 8 616 1290 56 0 0 chr4 4076382 4076562 -151553558 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 616 309 247 20 79 chr4 4076562 4076614 -151553506 - B3 SINE B2 -47 169 122 8 616 1274 270 163 15 chr4 4076744 4077542 -151552578 - L1M4c LINE L1 -1632 4744 3829 8 616 333 333 50 27 chr4 4077562 4077781 -151552339 - L1MEg LINE L1 -4726 1358 1135 8 616 8580 45 1 1 chr4 4077791 4079526 -151550594 - L1Md_F3 LINE L1 -15 6569 4835 8 616 2289 50 0 0 chr4 4079524 4079802 -151550318 + L1Md_F3 LINE L1 4553 4830 -1053 8 616 437 212 154 66 chr4 4079797 4080070 -151550050 - L1M4c LINE L1 -2541 3838 3542 8 616 346 281 68 26 chr4 4080104 4080221 -151549899 - B1F1 SINE Alu -8 141 20 8 616 265 238 207 6 chr4 4080251 4080420 -151549700 - L1M4c LINE L1 -2883 3493 3291 8 616 380 106 17 3 chr4 4080440 4080509 -151549611 + B1_Mus2 SINE Alu 52 147 0 8 616 188 34 0 33 chr4 4080514 4080544 -151549576 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 616 825 310 63 29 chr4 4080545 4081033 -151549087 - L1M4c LINE L1 -3135 3241 2737 8 616 636 283 39 86 chr4 4081062 4081294 -151548826 + ORR1E LTR MaLR 6 210 -160 8 616 6222 183 39 9 chr4 4081389 4082520 -151547600 - Lx5 LINE L1 -3 7047 5883 9 616 1585 120 4 0 chr4 4082521 4082763 -151547357 + L1_Mur2 LINE L1 4777 5019 -858 9 616 3263 152 36 9 chr4 4082789 4083346 -151546774 + L1_Mur2 LINE L1 5288 5859 -18 9 616 495 0 0 0 chr4 4083352 4083407 -151546713 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 616 446 170 64 27 chr4 4083407 4083587 -151546533 - RMER17C LTR ERVK -147 263 76 9 616 675 281 62 8 chr4 4083678 4084065 -151546055 - L1M4c LINE L1 -3892 2492 2085 8 616 30 69 0 0 chr4 4084382 4084440 -151545680 + AT_rich Low_complexity Low_complexity 1 58 0 9 616 2604 270 91 31 chr4 4084440 4085768 -151544352 - Lx9 LINE L1 -8 7636 6178 9 616 226 253 178 45 chr4 4085753 4085910 -151544210 - L1M4c LINE L1 -4727 1657 1480 8 616 11904 64 2 5 chr4 4085901 4088124 -151541996 - L1Md_F2 LINE L1 -5 6577 4360 9 616 40177 33 2 6 chr4 4088122 4094387 -151535733 - L1Md_T LINE L1 -2 6580 345 9 616 23244 109 36 16 chr4 4094388 4098497 -151531623 - L1Md_F2 LINE L1 -1510 4373 217 9 616 8470 32 0 0 chr4 4098563 4099782 -151530338 - L1Md_A LINE L1 -2 6580 5362 9 616 2336 19 0 0 chr4 4099776 4100043 -151530077 + L1_Mm LINE L1 4129 4395 -1488 9 616 983 277 130 11 chr4 4100340 4100709 -151529411 - Lx8 LINE L1 -4 7469 7057 1 616 500 318 94 31 chr4 4100833 4101378 -151528742 - L1M5 LINE L1 -1228 4918 4340 1 616 807 292 165 9 chr4 4102076 4102404 -151527716 - MLT1A1 LTR MaLR -7 401 23 1 616 237 65 0 0 chr4 4102804 4102835 -151527285 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 1 616 360 271 54 38 chr4 4102844 4103028 -151527092 + Tigger7 DNA MER2_type 2270 2456 -35 1 616 462 229 0 10 chr4 4103055 4103152 -151526968 - ORR1D-int LTR MaLR -1274 96 1 1 616 456 19 0 0 chr4 4103273 4103326 -151526794 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 616 318 115 0 0 chr4 4103328 4103389 -151526731 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 616 921 53 26 26 chr4 4103398 4103553 -151526567 + (GAGAA)n Simple_repeat Simple_repeat 5 159 0 1 616 447 19 0 0 chr4 4103749 4103801 -151526319 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 616 375 177 0 0 chr4 4104072 4104095 -151526025 + T-rich Low_complexity Low_complexity 57 79 0 1 616 540 0 0 0 chr4 4104095 4104155 -151525965 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1 616 375 177 0 0 chr4 4104155 4104210 -151525910 + T-rich Low_complexity Low_complexity 2 56 0 1 616 1100 66 73 0 chr4 4104214 4104350 -151525770 - B1_Mus1 SINE Alu 0 148 3 1 616 1320 259 50 20 chr4 4104594 4104952 -151525168 + ORR1D2 LTR MaLR 1 369 -1 1 616 258 56 0 0 chr4 4105003 4105039 -151525081 + (T)n Simple_repeat Simple_repeat 1 36 0 1 616 2730 246 85 80 chr4 4105048 4106684 -151523436 + ORR1D2-int LTR MaLR 4 1509 0 1 616 1109 276 84 42 chr4 4106684 4107039 -151523081 + ORR1D2 LTR MaLR 1 370 0 1 616 298 291 38 0 chr4 4107454 4107533 -151522587 + PB1D10 SINE Alu 1 82 -35 1 616 687 265 63 24 chr4 4107697 4107902 -151522218 + MER102b DNA MER1_type 2 214 -127 1 616 303 161 0 0 chr4 4109192 4109248 -151520872 + GA-rich Low_complexity Low_complexity 1 56 0 1 616 1125 121 0 0 chr4 4109503 4109677 -151520443 + (TTTCC)n Simple_repeat Simple_repeat 3 176 0 1 616 235 293 102 87 chr4 4110224 4110351 -151519769 - B4 SINE B4 -96 196 68 1 616 680 0 12 0 chr4 4110611 4110691 -151519429 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 1 616 352 295 125 10 chr4 4110886 4111078 -151519042 - L1ME1 LINE L1 -118 6061 5848 1 616 332 311 148 15 chr4 4111383 4111647 -151518473 - L1ME1 LINE L1 -793 5353 5055 1 616 558 252 81 61 chr4 4112304 4112452 -151517668 - B4A SINE B4 -140 152 2 1 616 231 36 0 0 chr4 4113474 4113502 -151516618 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 616 216 0 0 0 chr4 4113834 4113858 -151516262 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 616 668 294 70 46 chr4 4113864 4114149 -151515971 - B4A SINE B4 0 292 1 1 616 270 0 0 0 chr4 4115204 4115234 -151514886 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 616 3098 69 5 2 chr4 4116063 4116458 -151513662 - MTA_Mm LTR MaLR 0 396 1 1 616 274 129 32 0 chr4 4116761 4116823 -151513297 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 616 801 293 63 16 chr4 4116827 4117080 -151513040 - B4A SINE B4 -4 288 24 1 616 362 39 19 0 chr4 4117751 4117803 -151512317 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 616 241 337 81 0 chr4 4123943 4124029 -151506091 - B1F SINE Alu -12 137 45 1 616 34 24 0 0 chr4 4124625 4124666 -151505454 + AT_rich Low_complexity Low_complexity 1 41 0 1 616 24 0 0 0 chr4 4124987 4125011 -151505109 + AT_rich Low_complexity Low_complexity 1 24 0 1 616 186 43 0 0 chr4 4126282 4126305 -151503815 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 616 739 292 133 8 chr4 4127897 4128266 -151501854 + Lx9 LINE L1 7068 7482 -162 1 616 21 36 0 0 chr4 4128385 4128413 -151501707 + AT_rich Low_complexity Low_complexity 1 28 0 1 616 13274 87 3 8 chr4 4128475 4131075 -151499045 - L1Md_A LINE L1 -2861 3022 440 1 616 219 69 0 0 chr4 4133022 4133051 -151497069 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 616 4114 195 51 18 chr4 4134334 4135242 -151494878 + Lx7 LINE L1 6318 7255 -441 1 616 495 0 0 0 chr4 4135348 4135403 -151494717 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 616 333 0 0 0 chr4 4135403 4135439 -151494681 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 616 201 255 0 18 chr4 4135862 4135918 -151494202 + CT-rich Low_complexity Low_complexity 4 58 0 1 616 531 0 0 0 chr4 4136728 4136787 -151493333 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1 616 562 342 5 0 chr4 4136787 4136986 -151493134 - B3 SINE B2 -16 200 1 1 616 326 303 34 0 chr4 4137374 4137463 -151492657 + PB1 SINE Alu 22 113 -14 1 616 198 0 0 0 chr4 4138371 4138393 -151491727 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 616 234 91 0 0 chr4 4138410 4138443 -151491677 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 1 616 245 29 29 0 chr4 4139684 4139718 -151490402 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 1 616 267 355 0 26 chr4 4140523 4140601 -151489519 - RMER20B LTR ERVK -24 603 528 1 616 899 253 62 35 chr4 4140600 4140858 -151489262 - RMER20B LTR ERVK -22 605 341 1 616 237 234 0 0 chr4 4140903 4140967 -151489153 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 616 392 0 21 0 chr4 4141127 4141175 -151488945 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 616 522 291 141 11 chr4 4142410 4142594 -151487526 - B4A SINE B4 -2 290 83 1 616 21 36 0 0 chr4 4142611 4142639 -151487481 + AT_rich Low_complexity Low_complexity 1 28 0 1 616 258 32 0 0 chr4 4142733 4142764 -151487356 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1 616 366 285 175 0 chr4 4142768 4142905 -151487215 - RSINE1 SINE B4 0 165 5 1 616 400 203 0 0 chr4 4142917 4142991 -151487129 - B4A SINE B4 -206 86 13 1 616 744 309 76 25 chr4 4144509 4144824 -151485296 + MER2 DNA MER2_type 15 345 0 1 616 4491 92 9 3 chr4 4144833 4145512 -151484608 + MusHAL1 LINE L1 1115 1797 -915 1 616 6242 137 30 6 chr4 4145509 4147180 -151482940 + Lx2 LINE L1 4952 6648 -349 1 616 1311 118 14 0 chr4 4147175 4147395 -151482725 + Lx2 LINE L1 6775 6997 0 1 616 531 160 0 0 chr4 4147536 4147630 -151482490 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 616 506 165 10 0 chr4 4147629 4147732 -151482388 + GA-rich Low_complexity Low_complexity 1 104 0 1 616 557 296 134 16 chr4 4147737 4147991 -151482129 - B4 SINE B4 -8 284 1 1 616 201 298 35 0 chr4 4148172 4148229 -151481891 + L3 LINE CR1 4303 4361 -128 1 616 854 314 185 0 chr4 4148460 4148958 -151481162 + Lx8 LINE L1 6704 7293 -180 1 616 591 53 0 0 chr4 4148977 4149052 -151481068 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 616 185 154 26 0 chr4 4149100 4149139 -151480981 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1 616 326 288 152 0 chr4 4149143 4149275 -151480845 + MER2 DNA MER2_type 82 233 -112 1 616 28 0 0 0 chr4 4150310 4150338 -151479782 + AT_rich Low_complexity Low_complexity 1 28 0 1 616 393 233 0 0 chr4 4150611 4150697 -151479423 + MT2A LTR ERVL 3 88 -445 1 616 7809 44 0 0 chr4 4150885 4151972 -151478148 - L1Md_F2 LINE L1 -12 6570 5484 1 616 1312 260 42 60 chr4 4151972 4152373 -151477747 + MT2A LTR ERVL 69 462 -71 1 616 484 302 35 35 chr4 4153333 4153477 -151476643 - B1F SINE Alu 0 149 6 1 616 1235 107 45 0 chr4 4154124 4154302 -151475818 + RMER19B LTR ERVK 712 897 -5 1 616 3883 48 2 14 chr4 4154772 4155274 -151474846 + LTRIS2 LTR ERV1 69 564 0 1 616 219 337 104 44 chr4 4156724 4156907 -151473213 - MIRc SINE MIR -69 199 6 1 616 249 414 51 6 chr4 4158163 4158321 -151471799 - MER20 DNA MER1_type -1 218 54 1 616 225 308 32 32 chr4 4158385 4158479 -151471641 + MIRb SINE MIR 95 188 -80 1 616 192 40 0 0 chr4 4160261 4160286 -151469834 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 616 1179 269 41 50 chr4 4160992 4161356 -151468764 - ORR1D1 LTR MaLR 0 374 14 1 616 273 350 41 57 chr4 4162901 4163095 -151467025 + MER74A LTR ERVL 365 555 -3 1 616 259 40 100 0 chr4 4163130 4163180 -151466940 + (CAAAAA)n Simple_repeat Simple_repeat 2 56 0 1 616 202 338 25 0 chr4 4163251 4163331 -151466789 - MIR SINE MIR -120 142 61 1 616 30 0 0 0 chr4 4163498 4163528 -151466592 + AT_rich Low_complexity Low_complexity 1 30 0 1 616 2868 6 3 0 chr4 4164108 4164429 -151465691 - RLTRETN_Mm LTR ERVK 0 322 1 1 616 29527 18 1 2 chr4 4164429 4169276 -151460844 - MMETn-int LTR ERVK 0 4844 1 1 616 2876 12 0 0 chr4 4169276 4169598 -151460522 - RLTRETN_Mm LTR ERVK 0 322 1 1 616 705 47 0 14 chr4 4169631 4169725 -151460395 + RLTR9D LTR ERVK 1 83 -300 1 616 1479 156 89 10 chr4 4169858 4170149 -151459971 + RLTR9D LTR ERVK 88 401 -2 1 616 909 250 35 7 chr4 4172026 4172247 -151457873 + MTD LTR MaLR 1 210 -209 1 616 230 140 0 0 chr4 4172254 4172304 -151457816 + L1_Rod LINE L1 5747 5796 -51 1 616 3961 251 141 18 chr4 4172379 4173791 -151456329 + Lx7 LINE L1 5829 7414 -282 1 616 2499 184 52 6 chr4 4173923 4174422 -151455698 - RLTR28 LTR ERVL -2 522 1 1 616 408 125 0 0 chr4 4174470 4174534 -151455586 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 1 616 1094 170 50 5 chr4 4174535 4174736 -151455384 + MTD LTR MaLR 196 405 -14 1 616 265 279 36 60 chr4 4175766 4175850 -151454270 - B4A SINE B4 -19 273 192 1 616 2526 102 91 5 chr4 4176620 4177004 -151453116 - RLTR9B2 LTR ERVK -3 417 1 1 616 1487 229 42 40 chr4 4177144 4177582 -151452538 + RLTR1B LTR ERV1 54 512 0 1 616 513 92 0 0 chr4 4178286 4178362 -151451758 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 616 183 80 0 0 chr4 4178361 4178386 -151451734 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 616 864 258 144 106 chr4 4178393 4178833 -151451287 - L1MA8 LINE L1 -175 6116 5642 1 616 354 45 0 0 chr4 4178833 4178877 -151451243 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 616 864 258 144 106 chr4 4178877 4179199 -151450921 - L1MA8 LINE L1 -650 5641 5325 1 616 2213 145 35 25 chr4 4179222 4179626 -151450494 - Lx2 LINE L1 -1 6996 6589 1 616 266 345 34 17 chr4 4180261 4180379 -151449741 + MLT1L LTR MaLR 133 252 -358 1 616 1355 195 145 13 chr4 4181733 4182050 -151448070 + ORR1B2 LTR MaLR 1 359 -8 2 616 378 274 11 0 chr4 4182111 4182206 -151447914 - PB1D10 SINE Alu 0 117 22 2 616 403 329 112 48 chr4 4182869 4183118 -151447002 - B4 SINE B4 -25 267 3 2 616 1181 228 99 32 chr4 4183211 4183556 -151446564 - ORR1D2 LTR MaLR -2 368 1 2 616 750 339 0 0 chr4 4184064 4184253 -151445867 - B4A SINE B4 -103 189 1 2 616 213 121 0 0 chr4 4184754 4184787 -151445333 + (T)n Simple_repeat Simple_repeat 1 33 0 2 616 1200 41 7 0 chr4 4184963 4185108 -151445012 + B1_Mm SINE Alu 2 147 0 2 616 243 0 0 0 chr4 4185110 4185137 -151444983 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 616 9597 141 33 7 chr4 4185150 4186899 -151443221 - L1_Mus4 LINE L1 -19 5864 4070 2 616 4905 114 45 3 chr4 4186899 4187639 -151442481 + L1_Mus4 LINE L1 5854 6624 -12 2 616 231 299 109 40 chr4 4188214 4188315 -151441805 + MER45B DNA Tip100 742 849 -191 2 616 213 121 0 0 chr4 4188400 4188433 -151441687 + (T)n Simple_repeat Simple_repeat 1 33 0 2 616 267 256 122 76 chr4 4188645 4188776 -151441344 + RMER15 LTR ERVL 275 411 -164 2 616 239 258 15 0 chr4 4188916 4189004 -151441116 + T-rich Low_complexity Low_complexity 1 89 0 2 616 514 132 90 37 chr4 4189067 4189201 -151440919 - Lx3_Mus LINE L1 0 7009 6869 2 616 522 263 60 19 chr4 4189201 4189364 -151440756 + MLT1A0 LTR MaLR 29 199 -166 2 616 703 283 114 27 chr4 4189961 4190556 -151439564 - L1MA4A LINE L1 -436 5867 5209 2 616 19397 146 18 9 chr4 4190744 4193571 -151436549 + L1_Mus3 LINE L1 423 3306 -2577 2 9 6269 125 42 12 chr4 4193571 4194564 -151435556 - RLTR13D5 LTR ERVK 0 1023 1 2 617 19397 138 8 3 chr4 4194564 4195906 -151434214 + L1_Mus3 LINE L1 3307 4649 -1234 2 617 34013 46 0 3 chr4 4195906 4201359 -151428761 + L1Md_T LINE L1 59 5589 -297 2 617 8472 33 0 0 chr4 4201359 4202355 -151427765 + L1Md_T LINE L1 5590 6585 0 2 617 7520 108 52 5 chr4 4202421 4204338 -151425782 + L1_Mus3 LINE L1 4631 6638 0 2 617 2640 301 86 64 chr4 4204352 4206959 -151423161 - L1M2 LINE L1 -1096 5047 2358 2 617 1044 200 5 31 chr4 4206971 4207193 -151422927 + MTD LTR MaLR 10 225 -196 2 617 655 124 0 28 chr4 4207178 4207286 -151422834 + B1_Mus2 SINE Alu 43 147 0 2 617 194 33 67 0 chr4 4207286 4207316 -151422804 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 617 1277 179 18 5 chr4 4207317 4207536 -151422584 + MTD LTR MaLR 196 417 -2 2 617 416 153 36 14 chr4 4207630 4207719 -151422401 + ORR1E LTR MaLR 273 379 0 2 617 345 287 25 0 chr4 4207963 4208093 -151422027 - L1MC2 LINE L1 -207 6126 5989 2 617 231 36 0 0 chr4 4208116 4208144 -151421976 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 617 32544 85 6 5 chr4 4208518 4214658 -151415462 - L1Md_F2 LINE L1 -13 6569 446 2 617 387 0 0 0 chr4 4214712 4214755 -151415365 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 617 250 301 104 40 chr4 4214805 4214978 -151415142 + L2a LINE L2 3176 3359 -67 2 617 233 267 154 11 chr4 4215628 4215719 -151414401 + L2a LINE L2 3249 3352 -74 2 617 190 319 206 21 chr4 4215979 4216120 -151414000 + MIR SINE MIR 15 181 -81 2 617 1160 264 129 54 chr4 4217652 4217664 -151412456 - RMER19C LTR ERVK 0 611 604 2 617 4110 86 28 9 chr4 4217664 4218239 -151411881 - L1_Mus3 LINE L1 0 6638 6053 2 617 1160 264 129 54 chr4 4218239 4218306 -151411814 - RMER19C LTR ERVK -8 603 549 2 617 2545 53 224 3 chr4 4218306 4218663 -151411457 + RLTR10C LTR ERVK 1 436 0 2 617 1160 238 141 37 chr4 4218663 4219041 -151411079 - RMER19C LTR ERVK -63 548 138 2 617 319 203 0 0 chr4 4219598 4219657 -151410463 - MTEa LTR MaLR -5 374 316 2 617 317 279 21 31 chr4 4219662 4219758 -151410362 + ID_B1 SINE B4 129 223 -1 2 617 457 331 7 48 chr4 4219854 4220000 -151410120 + RSINE1 SINE B4 2 141 -24 2 617 330 26 0 0 chr4 4220000 4220039 -151410081 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 617 29223 83 7 2 chr4 4220863 4225779 -151404341 - L1Md_F2 LINE L1 0 6582 1648 2 617 264 30 0 0 chr4 4225784 4225817 -151404303 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 617 3739 98 17 0 chr4 4225822 4226364 -151403756 - L1_Mus1 LINE L1 -56 6511 5961 2 617 2719 74 0 0 chr4 4226362 4226801 -151403319 + L1_Mus1 LINE L1 5502 5940 -627 2 617 261 169 33 144 chr4 4228042 4228132 -151401988 - Arthur1B DNA Tip100 -451 774 695 2 617 540 0 0 0 chr4 4228323 4228383 -151401737 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 617 414 0 0 0 chr4 4228383 4228429 -151401691 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 617 205 200 13 26 chr4 4230292 4230369 -151399751 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 2 617 1039 220 213 16 chr4 4231599 4231767 -151398353 + MTD LTR MaLR 10 190 -229 2 617 285 29 0 0 chr4 4231767 4231801 -151398319 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 617 1039 220 213 16 chr4 4231801 4231942 -151398178 + MTD LTR MaLR 191 379 -40 2 617 1313 175 5 0 chr4 4232768 4232991 -151397129 - URR1B DNA MER1_type -1 224 1 2 617 200 163 23 0 chr4 4233418 4233461 -151396659 + CT-rich Low_complexity Low_complexity 5 48 0 2 617 261 304 92 49 chr4 4234637 4235027 -151395093 - L1MA7 LINE L1 -11 6280 5874 2 617 374 0 22 0 chr4 4235047 4235093 -151395027 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 617 208 293 0 0 chr4 4235107 4235165 -151394955 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 617 2466 217 6 39 chr4 4235194 4235727 -151394393 + RMER19C LTR ERVK 1 611 0 2 617 2277 173 27 78 chr4 4235803 4236249 -151393871 + RMER15 LTR ERVL 1 423 -152 2 617 21 71 0 0 chr4 4236286 4236328 -151393792 + AT_rich Low_complexity Low_complexity 1 42 0 2 617 832 260 84 67 chr4 4236340 4236706 -151393414 - MT2A LTR ERVL -114 419 1 2 617 510 264 8 24 chr4 4236706 4236828 -151393292 + RMER15 LTR ERVL 425 544 -31 2 617 228 273 61 0 chr4 4236852 4236918 -151393202 - B1F2 SINE Alu -79 70 1 2 617 229 338 65 61 chr4 4237128 4237342 -151392778 - L2 LINE L2 -496 2923 2709 2 617 659 58 0 0 chr4 4237348 4237435 -151392685 + L1_Mm LINE L1 4001 4087 -1796 2 617 974 209 50 0 chr4 4237446 4237647 -151392473 - MTD LTR MaLR -208 211 1 2 617 431 272 88 60 chr4 4238374 4238589 -151391531 - Tigger7 DNA MER2_type 0 2491 2271 2 617 558 262 41 25 chr4 4239520 4239716 -151390404 - Lx8 LINE L1 -2 7471 7273 2 617 4523 41 9 0 chr4 4239734 4240276 -151389844 + L1Md_F2 LINE L1 6024 6570 -12 2 617 2192 92 6 59 chr4 4240292 4240629 -151389491 - ORR1A2 LTR MaLR -8 319 1 2 617 664 0 52 0 chr4 4240908 4241004 -151389116 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2 617 204 158 0 0 chr4 4241347 4241385 -151388735 + CT-rich Low_complexity Low_complexity 1 38 0 2 617 31555 68 9 9 chr4 4244140 4247791 -151382329 - L1Md_F2 LINE L1 -2 6580 2934 2 617 3152 48 8 20 chr4 4247791 4248192 -151381928 + MTA_Mm LTR MaLR 1 396 0 2 617 31555 111 34 12 chr4 4248192 4250796 -151379324 - L1Md_F2 LINE L1 -2950 2933 264 2 617 450 0 0 0 chr4 4251379 4251429 -151378691 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 617 960 135 0 0 chr4 4251943 4252076 -151378044 + B1_Mus2 SINE Alu 5 137 -10 2 617 241 272 92 48 chr4 4253609 4253860 -151376260 + L1MC5 LINE L1 7314 7575 -386 2 617 551 182 12 22 chr4 4253877 4253993 -151376127 - MTC LTR MaLR -292 115 1 2 617 328 219 129 26 chr4 4254112 4254267 -151375853 + L1MC5 LINE L1 7735 7905 -56 2 617 1171 274 134 8 chr4 4254581 4254938 -151375182 - MTD LTR MaLR 0 419 18 2 617 1049 272 128 31 chr4 4254960 4255381 -151374739 - MTD-int LTR MaLR -5 1253 792 2 617 602 216 17 0 chr4 4255400 4255516 -151374604 - RSINE1 SINE B4 -46 119 2 2 617 322 279 235 0 chr4 4255547 4255683 -151374437 - L1MC3 LINE L1 -660 7125 6958 2 617 1351 275 49 5 chr4 4256251 4256638 -151373482 + Lx6 LINE L1 6674 7438 -22 2 617 285 123 15 30 chr4 4256690 4256757 -151373363 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 617 459 52 0 0 chr4 4257200 4257258 -151372862 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 617 264 185 93 0 chr4 4258791 4258845 -151371275 - BC1_Mm scRNA scRNA -92 60 2 2 617 283 255 49 0 chr4 4258911 4259013 -151371107 - L1MDb LINE L1 -4941 1692 1586 2 617 377 321 71 29 chr4 4259115 4259285 -151370835 - L1MDb LINE L1 -5069 1471 1295 2 617 448 272 64 71 chr4 4259806 4260103 -151370017 - L1MDb LINE L1 -5281 1259 965 2 617 2958 56 0 3 chr4 4261687 4262064 -151368056 - L1Md_F2 LINE L1 -4 6578 6203 2 617 293 321 0 26 chr4 4263026 4263141 -151366979 + CT-rich Low_complexity Low_complexity 1 112 0 2 617 207 0 0 0 chr4 4263141 4263164 -151366956 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 2 617 1945 164 69 24 chr4 4263626 4264002 -151366118 + ORR1B1 LTR MaLR 1 393 -1 2 617 22 35 0 0 chr4 4264579 4264608 -151365512 + AT_rich Low_complexity Low_complexity 1 29 0 2 617 540 81 0 0 chr4 4264720 4264794 -151365326 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 2 617 468 297 68 0 chr4 4264794 4264942 -151365178 - RSINE1 SINE B4 -3 162 5 2 617 208 430 47 0 chr4 4265565 4265693 -151364427 - MIRb SINE MIR -111 157 24 2 617 257 286 60 20 chr4 4266493 4266593 -151363527 + ORR1E LTR MaLR 3 106 -253 2 617 235 191 21 0 chr4 4266880 4266927 -151363193 + ORR1E LTR MaLR 294 341 -38 2 617 677 285 27 5 chr4 4267018 4267205 -151362915 + B3A SINE B2 3 193 -5 2 617 548 341 159 0 chr4 4267228 4267486 -151362634 - MER31A LTR ERV1 -43 442 144 2 617 2736 66 143 139 chr4 4267486 4267996 -151362124 - RLTR1B LTR ERV1 0 512 1 2 617 4968 36 54 0 chr4 4267996 4268627 -151361493 - RLTR1B-int LTR ERV1 0 3299 2635 2 617 1866 57 12 8 chr4 4268624 4268873 -151361247 - RLTR1B-int LTR ERV1 -1190 2109 1860 2 617 10771 84 33 43 chr4 4268888 4270112 -151360008 - RLTR1B-int LTR ERV1 -1551 1748 522 2 617 363 44 0 0 chr4 4270112 4270157 -151359963 + (CTG)n Simple_repeat Simple_repeat 3 47 0 2 617 10771 83 18 97 chr4 4270157 4270660 -151359460 - RLTR1B-int LTR ERV1 -2778 521 123 2 617 1554 57 0 144 chr4 4270667 4271076 -151359044 - RLTR1B-int LTR ERV1 -3036 263 1 2 617 2815 55 143 139 chr4 4271076 4271586 -151358534 - RLTR1B LTR ERV1 0 512 1 2 617 775 290 135 6 chr4 4271671 4271983 -151358137 + MER31A LTR ERV1 16 367 -118 2 617 399 324 64 47 chr4 4272092 4272325 -151357795 - MLT1B LTR MaLR -5 385 149 2 617 24 32 0 0 chr4 4273900 4273931 -151356189 + AT_rich Low_complexity Low_complexity 1 31 0 2 617 21 36 0 0 chr4 4275213 4275241 -151354879 + AT_rich Low_complexity Low_complexity 1 28 0 2 617 519 304 141 61 chr4 4275434 4275697 -151354423 - MLT1B LTR MaLR -72 318 35 2 617 184 259 16 94 chr4 4276975 4277039 -151353081 + L3 LINE CR1 2289 2347 -2142 2 617 232 235 113 40 chr4 4277593 4277717 -151352403 - Lx8 LINE L1 -5 7468 7336 2 617 1981 301 25 5 chr4 4277881 4278479 -151351641 - Lx8 LINE L1 -181 7292 6683 2 617 766 222 99 53 chr4 4278507 4278902 -151351218 - MER34B-int LTR ERV1 -2223 3133 2721 2 617 1027 241 75 6 chr4 4278936 4279254 -151350866 - Lx9 LINE L1 -107 7537 7198 3 617 26734 103 12 4 chr4 4279335 4284167 -151345953 - L1_Mus1 LINE L1 0 6567 1730 3 617 2326 152 4 0 chr4 4284167 4284665 -151345455 - L1_Mus1 LINE L1 -4464 1419 919 3 617 8154 47 2 1 chr4 4284662 4285941 -151344179 - L1Md_F2 LINE L1 -12 6570 5291 3 617 13000 64 1 0 chr4 4285940 4287616 -151342504 + L1Md_F2 LINE L1 3589 5265 -618 3 617 2313 182 127 8 chr4 4287609 4288145 -151341975 - L1_Mus1 LINE L1 -5706 910 311 3 617 8700 145 27 9 chr4 4288213 4290309 -151339811 - Lx2 LINE L1 -1 6996 4853 3 617 399 241 8 67 chr4 4290618 4290738 -151339382 + RMER15 LTR ERVL 26 138 -437 3 617 628 311 51 43 chr4 4290735 4290970 -151339150 + RMER15 LTR ERVL 251 487 -88 3 617 29 70 0 0 chr4 4291253 4291310 -151338810 + AT_rich Low_complexity Low_complexity 1 57 0 3 617 377 97 14 0 chr4 4292301 4292373 -151337747 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 617 555 287 0 15 chr4 4292379 4292510 -151337610 - RSINE1 SINE B4 -35 130 2 3 617 909 292 102 28 chr4 4293710 4294210 -151335910 + L1M2 LINE L1 4708 5244 -899 3 617 709 282 9 56 chr4 4294269 4294502 -151335618 + Lx9 LINE L1 7004 7225 -419 3 617 844 305 36 34 chr4 4294589 4294757 -151335363 - Lx9 LINE L1 -27 7617 7450 3 617 585 28 0 0 chr4 4294757 4294828 -151335292 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 3 617 844 305 36 34 chr4 4294828 4295097 -151335023 - Lx9 LINE L1 -195 7449 7179 3 617 3309 105 2 0 chr4 4295379 4295854 -151334266 + L1_Mm LINE L1 4652 5127 -756 3 617 3441 75 9 0 chr4 4295854 4296308 -151333812 + L1_Mus1 LINE L1 6110 6567 0 3 617 7191 132 20 6 chr4 4296572 4298552 -151331568 + Lx LINE L1 4643 6650 -4 3 617 530 268 181 7 chr4 4299209 4299502 -151330618 - MER58D DNA MER1_type -1 385 42 3 617 218 312 16 0 chr4 4300307 4300356 -151329764 - L2c LINE L2 -228 3159 3110 3 617 988 195 93 0 chr4 4300356 4300561 -151329559 + URR1B DNA MER1_type 2 225 0 3 617 218 312 16 0 chr4 4300561 4300575 -151329545 - L2c LINE L2 -278 3109 3096 3 617 477 212 29 29 chr4 4300577 4300713 -151329407 - Lx6 LINE L1 0 7460 7325 3 617 563 282 87 11 chr4 4300759 4300942 -151329178 + MLT2B2 LTR ERVL 366 562 0 3 617 281 308 56 28 chr4 4301761 4301868 -151328252 - MLT1A LTR MaLR -46 328 219 3 617 2194 198 7 24 chr4 4302419 4302838 -151327282 + MTC LTR MaLR 1 412 -9 3 617 230 278 74 57 chr4 4303308 4303355 -151326765 + MLT1C LTR MaLR 35 79 -388 3 617 1750 207 15 53 chr4 4303355 4303748 -151326372 - ORR1C1 LTR MaLR 0 378 1 3 617 230 278 74 57 chr4 4303748 4303822 -151326298 + MLT1C LTR MaLR 80 158 -309 3 617 322 332 69 66 chr4 4304116 4304419 -151325701 + MER2 DNA MER2_type 2 305 -40 3 617 617 295 131 60 chr4 4306672 4306939 -151323181 - MTEb LTR MaLR -86 293 8 3 617 511 263 7 36 chr4 4307929 4308067 -151322053 + Lx8 LINE L1 6253 6386 -1087 3 617 297 361 68 42 chr4 4308571 4308762 -151321358 - MLT2F LTR ERVL -177 486 291 3 617 303 267 101 58 chr4 4308757 4308896 -151321224 - MLT2F LTR ERVL -514 149 5 3 617 2008 188 60 13 chr4 4308898 4309296 -151320824 - MTC LTR MaLR -4 417 1 3 617 580 359 20 25 chr4 4309347 4309544 -151320576 - B4A SINE B4 0 292 97 3 617 735 292 122 14 chr4 4310134 4310617 -151319503 + L1M5 LINE L1 5288 5822 -357 3 617 721 240 31 62 chr4 4310854 4311049 -151319071 - Lx8 LINE L1 -1067 6406 6218 3 617 485 302 0 14 chr4 4311051 4311066 -151319054 + MTD LTR MaLR 24 38 -383 3 617 248 102 0 20 chr4 4311066 4311116 -151319004 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 617 571 257 0 1 chr4 4311116 4311242 -151318878 + MTD LTR MaLR 39 163 -256 3 617 537 240 82 0 chr4 4311283 4311429 -151318691 + MTD LTR MaLR 260 417 -2 3 617 832 285 68 34 chr4 4311721 4312015 -151318105 + Lx8 LINE L1 6546 6849 -624 3 617 201 175 0 0 chr4 4312753 4312793 -151317327 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 617 5349 229 37 31 chr4 4314442 4314573 -151315547 + Lx6 LINE L1 6227 6346 -1114 3 617 1144 75 0 7 chr4 4314573 4314720 -151315400 + B1_Mus2 SINE Alu 2 147 0 3 617 5349 229 37 31 chr4 4314720 4315815 -151314305 + Lx6 LINE L1 6347 7460 0 3 617 38810 31 3 7 chr4 4316943 4322973 -151307147 - L1Md_T LINE L1 -1 6581 581 3 617 530 60 0 6 chr4 4323629 4323702 -151306418 - L1Md_T LINE L1 -282 5901 5809 3 617 423 0 0 0 chr4 4323734 4323781 -151306339 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 618 22 70 0 0 chr4 4325507 4325550 -151304570 + AT_rich Low_complexity Low_complexity 1 43 0 3 618 297 0 0 0 chr4 4326505 4326538 -151303582 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 618 445 71 14 14 chr4 4326836 4326907 -151303213 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 618 1604 184 102 3 chr4 4327105 4327438 -151302682 - ORR1B2 LTR MaLR 0 367 2 3 618 317 219 229 0 chr4 4327887 4327983 -151302137 + MTEb LTR MaLR 2 119 -260 3 618 826 223 174 31 chr4 4328118 4328405 -151301715 + RMER13B LTR ERVK 554 881 -27 3 618 732 43 0 0 chr4 4328523 4328615 -151301505 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 618 201 380 30 0 chr4 4328876 4328976 -151301144 - L2 LINE L2 -1413 2006 1904 3 618 415 273 144 111 chr4 4328977 4329220 -151300900 + ORR1E LTR MaLR 4 254 -105 3 618 195 309 37 12 chr4 4329789 4329871 -151300249 - L2 LINE L2 -2217 1202 1119 3 618 3050 42 0 0 chr4 4330003 4330360 -151299760 - IAPEY2_LTR LTR ERVK 0 357 1 3 618 2654 194 38 30 chr4 4331036 4331567 -151298553 - RMER15 LTR ERVL 0 575 41 3 618 564 15 0 0 chr4 4332301 4332366 -151297754 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 618 8353 46 5 0 chr4 4332369 4334013 -151296107 - L1Md_F3 LINE L1 0 6584 4930 3 618 322 296 135 21 chr4 4334428 4334621 -151295499 + L1MD LINE L1 3662 3876 -2270 3 618 295 339 89 72 chr4 4335013 4335172 -151294948 - MER92A LTR ERV1 -32 380 238 3 618 383 285 155 56 chr4 4335172 4335495 -151294625 - ORR1E LTR MaLR -2 357 3 3 618 295 339 89 72 chr4 4335495 4335694 -151294426 - MER92A LTR ERV1 -175 237 16 3 618 24 0 0 0 chr4 4335708 4335732 -151294388 + AT_rich Low_complexity Low_complexity 1 24 0 3 618 303 330 11 11 chr4 4336005 4336097 -151294023 + B3A SINE B2 103 194 -4 3 618 1149 34 27 0 chr4 4336194 4336343 -151293777 + L1Md_A LINE L1 6429 6581 -1 3 618 275 351 39 123 chr4 4336598 4336858 -151293262 + ORR1E LTR MaLR 64 301 -58 3 618 232 427 73 0 chr4 4336874 4336970 -151293150 - B4A SINE B4 -104 188 86 3 618 500 307 102 88 chr4 4337046 4337863 -151292257 + L1MB8 LINE L1 4092 4919 -1227 3 618 6348 228 39 33 chr4 4337976 4339738 -151290382 + Lx6 LINE L1 5509 7274 -186 3 618 306 261 33 111 chr4 4339753 4339934 -151290186 - RLTR15 LTR ERVK -15 344 178 3 618 426 250 0 11 chr4 4340012 4340105 -151290015 - Lx6 LINE L1 -926 6534 6443 3 618 349 292 66 8 chr4 4340109 4340230 -151289890 - RLTR15 LTR ERVK -231 128 1 3 618 667 177 68 31 chr4 4340230 4340393 -151289727 + Lx7 LINE L1 7528 7696 0 3 618 354 295 90 104 chr4 4340513 4340750 -151289370 + L1MB8 LINE L1 5363 5574 -610 3 618 1140 79 0 0 chr4 4340750 4340890 -151289230 - B1_Mus1 SINE Alu -8 140 1 3 618 403 285 67 66 chr4 4340890 4341298 -151288822 + L1MB8 LINE L1 5575 6000 -174 3 618 1116 276 100 9 chr4 4341327 4341656 -151288464 + MTE2b LTR MaLR 5 363 -16 3 618 917 263 14 38 chr4 4341730 4341943 -151288177 - B3 SINE B2 0 216 9 3 618 969 41 0 0 chr4 4342149 4342270 -151287850 + L1Md_F2 LINE L1 5466 5586 -297 3 618 7992 49 1 9 chr4 4342272 4343268 -151286852 + L1Md_F2 LINE L1 5589 6576 -6 3 618 301 333 22 29 chr4 4343362 4343498 -151286622 - MLT1A LTR MaLR -25 349 215 3 618 1538 53 9 14 chr4 4343685 4343896 -151286224 - L1Md_F3 LINE L1 0 6584 6375 3 618 708 278 40 25 chr4 4344166 4344365 -151285755 + B3A SINE B2 15 216 0 3 618 246 32 0 0 chr4 4344876 4344907 -151285213 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 618 241 77 19 37 chr4 4345697 4345751 -151284369 + (CAAAAA)n Simple_repeat Simple_repeat 4 56 0 3 618 221 125 83 0 chr4 4345758 4345806 -151284314 + A-rich Low_complexity Low_complexity 4 55 0 3 618 283 45 22 22 chr4 4345921 4345967 -151284153 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 3 618 348 356 10 0 chr4 4346420 4346524 -151283596 - PB1D10 SINE Alu -9 108 4 3 618 4652 44 5 3 chr4 4347664 4348236 -151281884 - L1Md_F2 LINE L1 -3 6579 6007 3 618 451 200 61 79 chr4 4348296 4348524 -151281596 - Lx9 LINE L1 -2 7642 7419 3 618 909 157 183 0 chr4 4348686 4348877 -151281243 - URR1A DNA MER1_type 0 226 1 3 618 489 307 12 67 chr4 4349521 4349685 -151280435 - RSINE1 SINE B4 0 165 11 3 618 257 0 30 0 chr4 4349940 4349973 -151280147 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 618 304 296 118 51 chr4 4350618 4350796 -151279324 + L1MEg LINE L1 1033 1222 -4862 3 618 906 325 29 16 chr4 4350944 4351257 -151278863 + MTE2a LTR MaLR 37 353 -26 3 618 23 0 0 0 chr4 4351257 4351280 -151278840 + AT_rich Low_complexity Low_complexity 1 23 0 3 618 231 36 0 0 chr4 4351280 4351308 -151278812 + (CTA)n Simple_repeat Simple_repeat 3 30 0 3 618 945 309 18 70 chr4 4351341 4351682 -151278438 + MTE2a-int LTR MaLR 17 339 -1241 3 618 263 257 27 54 chr4 4351688 4351762 -151278358 - RLTR9C LTR ERVK -109 300 229 3 618 665 218 80 94 chr4 4351775 4351988 -151278132 - RLTR9C LTR ERVK -183 210 1 3 618 406 88 0 29 chr4 4352346 4352416 -151277704 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 3 618 3038 63 0 5 chr4 4352480 4352876 -151277244 - L1Md_F2 LINE L1 -12 6570 6177 3 618 685 184 0 0 chr4 4352902 4353016 -151277104 + B1_Mus2 SINE Alu 25 138 -9 3 618 486 0 0 0 chr4 4353016 4353070 -151277050 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 3 618 1605 289 136 48 chr4 4353095 4353917 -151276203 + MTE2a-int LTR MaLR 533 1479 -101 3 618 3115 48 30 0 chr4 4353917 4354316 -151275804 + RLTR10A LTR ERVK 1 411 0 3 618 1605 261 115 37 chr4 4354316 4354415 -151275705 + MTE2a-int LTR MaLR 1480 1579 -1 3 618 1229 254 67 33 chr4 4354415 4354774 -151275346 + MTE2a LTR MaLR 1 371 -8 3 618 21 36 0 0 chr4 4354977 4355005 -151275115 + AT_rich Low_complexity Low_complexity 1 28 0 3 618 385 300 105 68 chr4 4355421 4355685 -151274435 - MLT1A LTR MaLR -8 366 27 3 618 189 154 0 0 chr4 4356372 4356411 -151273709 + T-rich Low_complexity Low_complexity 1 39 0 3 618 596 204 80 0 chr4 4356622 4356735 -151273385 + B3A SINE B2 1 122 -76 3 618 372 156 109 0 chr4 4357142 4357206 -151272914 - B1F1 SINE Alu -69 80 10 3 618 257 316 0 49 chr4 4357159 4357240 -151272880 - B4A SINE B4 -151 141 65 3 618 462 320 125 34 chr4 4357294 4357906 -151272214 - L1ME3B LINE L1 -192 5987 5318 4 618 26 64 0 0 chr4 4357906 4357953 -151272167 + AT_rich Low_complexity Low_complexity 1 47 0 4 618 259 281 90 52 chr4 4358164 4358431 -151271689 - L1ME3B LINE L1 -792 5354 5078 4 618 227 362 12 0 chr4 4358962 4359042 -151271078 - ID2 SINE ID 0 83 3 4 618 311 271 93 16 chr4 4359073 4359321 -151270799 - L1ME3B LINE L1 -1704 4442 4176 4 618 957 276 93 52 chr4 4359506 4359672 -151270448 + ORR1D2 LTR MaLR 3 157 -213 4 618 920 205 30 206 chr4 4359672 4360108 -151270012 - RLTR10D LTR ERVK 0 359 1 4 618 957 276 93 52 chr4 4360108 4360285 -151269835 + ORR1D2 LTR MaLR 158 360 -10 4 618 303 300 78 91 chr4 4360386 4360540 -151269580 + B4A SINE B4 2 153 -139 4 618 456 35 0 0 chr4 4360624 4360682 -151269438 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 618 370 350 63 29 chr4 4361449 4361759 -151268361 - L1ME3B LINE L1 -3195 2951 2631 4 618 293 0 27 0 chr4 4362030 4362067 -151268053 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 618 270 0 0 0 chr4 4362110 4362140 -151267980 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 618 345 303 37 15 chr4 4362805 4362939 -151267181 - L1ME3B LINE L1 -3750 2396 2260 4 618 390 365 13 13 chr4 4363333 4363483 -151266637 + MER45C DNA Tip100 30 179 -774 4 618 427 274 214 0 chr4 4363707 4363861 -151266259 - ID_B1 SINE B4 -30 194 8 4 618 249 284 30 0 chr4 4363871 4363938 -151266182 + MER45C DNA Tip100 874 942 -11 4 618 189 343 201 7 chr4 4364135 4364279 -151265841 - MIRc SINE MIR -88 180 9 4 618 1546 199 80 45 chr4 4365681 4366108 -151264012 - RMER10A LTR ERVL 0 442 1 4 618 228 86 0 0 chr4 4366406 4366441 -151263679 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 4 618 1622 236 23 18 chr4 4366444 4366836 -151263284 - Lx5 LINE L1 -21 7029 6636 4 618 1250 202 232 30 chr4 4366921 4367257 -151262863 + MTC LTR MaLR 18 421 0 4 618 323 239 89 0 chr4 4368074 4368195 -151261925 + L1MA6 LINE L1 6144 6274 -17 4 618 285 199 16 88 chr4 4368277 4368470 -151261650 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 4 618 284 258 0 61 chr4 4368741 4368840 -151261280 + Lx8 LINE L1 7379 7471 -2 4 618 348 302 66 0 chr4 4368869 4368975 -151261145 + B1_Mur3 SINE Alu 7 119 -30 4 618 463 31 31 0 chr4 4369542 4369607 -151260513 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 618 423 0 0 0 chr4 4369607 4369653 -151260467 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 618 2816 167 4 49 chr4 4371832 4372090 -151258030 + RLTR28 LTR ERVL 1 257 -267 4 618 1178 114 17 28 chr4 4372090 4372271 -151257849 + B2_Mm2 SINE B2 2 180 -15 4 618 636 14 0 0 chr4 4372275 4372348 -151257772 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 4 618 2816 167 4 49 chr4 4372348 4372633 -151257487 + RLTR28 LTR ERVL 258 524 0 4 618 462 317 0 47 chr4 4372679 4372705 -151257415 - ID_B1 SINE B4 0 224 84 4 618 672 223 8 8 chr4 4372705 4372827 -151257293 - B1_Mur2 SINE Alu -25 124 3 4 618 404 264 45 37 chr4 4373121 4373255 -151256865 - RMER5 LTR ERV1 0 534 400 4 618 622 259 35 35 chr4 4373296 4373496 -151256624 - RLTR14 LTR ERV1 -41 341 142 4 618 645 49 0 0 chr4 4373504 4373585 -151256535 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4 618 1912 179 52 30 chr4 4373585 4373989 -151256131 - RMER10A LTR ERVL -29 413 1 4 618 479 228 0 0 chr4 4373992 4374093 -151256027 - RLTR14 LTR ERV1 -239 143 43 4 618 285 183 0 0 chr4 4374097 4374157 -151255963 + CT-rich Low_complexity Low_complexity 2 61 0 4 618 1195 84 0 11 chr4 4374158 4374338 -151255782 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 618 2036 152 29 50 chr4 4374351 4374732 -151255388 - Lx4A LINE L1 -3 7055 6683 4 618 2386 156 12 43 chr4 4374732 4375147 -151254973 - RLTR23 LTR ERV1 -1 429 28 4 618 855 83 82 20 chr4 4375147 4375294 -151254826 - Lx4A LINE L1 -425 6633 6478 4 618 4142 112 60 1 chr4 4375271 4375471 -151254649 + L1_Mur2 LINE L1 3850 4073 -1804 4 618 438 20 0 0 chr4 4375471 4375522 -151254598 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 618 4142 112 60 1 chr4 4375522 4376020 -151254100 + L1_Mur2 LINE L1 4074 4588 -1289 4 618 249 255 0 0 chr4 4376024 4376075 -151254045 - RLTR14 LTR ERV1 -331 51 1 4 618 846 260 91 35 chr4 4376075 4376387 -151253733 - RMER5 LTR ERV1 -141 393 63 4 618 22 0 0 0 chr4 4377274 4377296 -151252824 + AT_rich Low_complexity Low_complexity 1 22 0 4 618 933 281 137 10 chr4 4377818 4378213 -151251907 - RMER5 LTR ERV1 -57 477 33 4 618 646 221 272 11 chr4 4379227 4379513 -151250607 + ORR1D1 LTR MaLR 10 369 -5 4 618 827 318 82 42 chr4 4379530 4380361 -151249759 - L1_Rod LINE L1 -329 5518 4655 4 618 416 279 26 45 chr4 4380368 4380522 -151249598 + Lx7 LINE L1 6119 6269 -1427 4 618 1954 224 64 44 chr4 4380529 4381028 -151249092 - MTC-int LTR MaLR -430 828 320 4 618 539 280 25 76 chr4 4381497 4381694 -151248426 - B3A SINE B2 -1 197 11 4 618 680 277 33 63 chr4 4381756 4381977 -151248143 - B3A SINE B2 0 216 1 4 618 1366 308 9 7 chr4 4382854 4383430 -151246690 - RNERVK23-int LTR ERVK -491 7726 7241 4 618 287 247 0 0 chr4 4384286 4384363 -151245757 - RNERVK23-int LTR ERVK -1886 6331 6255 4 618 876 302 58 52 chr4 4384795 4385845 -151244275 - RNERVK23-int LTR ERVK -5146 3071 1603 4 618 286 285 62 62 chr4 4386002 4386148 -151243972 - RNERVK23-int LTR ERVK -6391 1826 1681 4 618 9237 122 26 42 chr4 4387150 4387701 -151242419 - ETnERV2-int LTR ERVK -4205 3201 2662 4 618 3079 67 59 28 chr4 4387701 4388162 -151241958 + IAPLTR2_Mm LTR ERVK 1 475 0 4 618 12961 162 68 54 chr4 4388162 4390728 -151239392 - ETnERV2-int LTR ERVK -4745 2661 66 4 618 466 322 11 34 chr4 4390734 4390998 -151239122 - RNERVK23-int LTR ERVK -6806 438 181 4 618 1634 174 99 68 chr4 4391636 4392001 -151238119 + RLTR41 LTR ERV1 71 446 0 4 618 2615 126 33 45 chr4 4392332 4392757 -151237363 - RLTR9B2 LTR ERVK 0 420 1 4 618 654 286 99 39 chr4 4392867 4393231 -151236889 - RMER5 LTR ERV1 0 534 149 4 618 26 30 0 0 chr4 4393421 4393454 -151236666 + AT_rich Low_complexity Low_complexity 1 33 0 4 618 255 220 61 52 chr4 4393735 4393850 -151236270 + PB1D10 SINE Alu 1 116 -1 4 618 205 245 0 35 chr4 4394367 4394481 -151235639 + (TATG)n Simple_repeat Simple_repeat 1 110 0 4 618 6289 115 8 8 chr4 4394522 4395581 -151234539 - Lx2 LINE L1 -470 6527 5470 4 618 4909 122 40 11 chr4 4395574 4395687 -151234433 + MusHAL1 LINE L1 1139 1252 -1460 4 618 195 42 0 0 chr4 4395687 4395711 -151234409 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 618 4909 122 40 11 chr4 4395711 4396473 -151233647 + MusHAL1 LINE L1 1253 2038 -674 4 618 234 0 0 0 chr4 4396591 4396617 -151233503 + (T)n Simple_repeat Simple_repeat 1 26 0 4 618 13248 176 33 52 chr4 4396617 4397083 -151233037 - Lx2 LINE L1 -1592 4285 3844 4 618 1452 44 0 0 chr4 4397083 4397263 -151232857 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 618 13248 176 33 52 chr4 4397263 4397691 -151232429 - Lx2 LINE L1 -2034 3843 3480 4 618 207 0 0 0 chr4 4397691 4397714 -151232406 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 618 13248 176 33 52 chr4 4397714 4399102 -151231018 - Lx2 LINE L1 -2398 3479 2059 4 618 333 0 0 0 chr4 4399102 4399139 -151230981 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 618 13248 199 35 56 chr4 4399139 4400299 -151229821 - Lx2 LINE L1 -3819 2058 895 4 618 189 279 23 0 chr4 4401506 4401549 -151228571 + L2a LINE L2 3343 3386 -40 4 618 376 266 210 44 chr4 4401784 4401820 -151228300 - Tigger7 DNA MER2_type -3 2488 2453 4 618 2143 109 48 0 chr4 4401820 4402132 -151227988 + ORR1A2 LTR MaLR 1 327 0 4 618 376 266 210 44 chr4 4402132 4402276 -151227844 - Tigger7 DNA MER2_type -39 2452 2278 4 618 600 363 39 16 chr4 4402283 4402588 -151227532 - Tigger7 DNA MER2_type -2163 328 17 4 618 30658 81 13 3 chr4 4402910 4407829 -151222291 - L1Md_F2 LINE L1 -9 6573 1617 4 618 228 175 50 0 chr4 4408057 4408097 -151222023 - L1M6 LINE L1 -5782 714 673 4 618 1427 18 0 0 chr4 4408122 4408291 -151221829 - L1Md_A LINE L1 0 6582 6414 4 618 387 0 0 0 chr4 4409138 4409181 -151220939 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 618 270 81 0 0 chr4 4409641 4409678 -151220442 + (T)n Simple_repeat Simple_repeat 1 37 0 4 618 371 252 43 51 chr4 4409847 4409964 -151220156 + Lx8 LINE L1 7080 7195 -278 4 618 40 83 0 0 chr4 4409988 4410084 -151220036 + AT_rich Low_complexity Low_complexity 1 96 0 4 618 207 219 41 20 chr4 4410173 4410271 -151219849 + (CAA)n Simple_repeat Simple_repeat 3 102 0 4 618 210 196 36 0 chr4 4410187 4410243 -151219877 + A-rich Low_complexity Low_complexity 4 61 0 4 618 2421 285 61 26 chr4 4410296 4411102 -151219018 - Lx7 LINE L1 -428 7268 6435 4 618 202 77 50 25 chr4 4411182 4411222 -151218898 + A-rich Low_complexity Low_complexity 4 44 0 4 618 180 0 0 0 chr4 4411254 4411274 -151218846 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 618 440 129 10 0 chr4 4411275 4411376 -151218744 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 618 1399 246 78 96 chr4 4411935 4413059 -151217061 + RMER12 LTR ERVK 1 1222 -182 4 618 4817 74 22 9 chr4 4413098 4413767 -151216353 + L1_Mus3 LINE L1 5959 6636 -2 4 618 840 270 22 52 chr4 4415102 4415154 -151214966 - Lx5 LINE L1 -680 6780 6739 4 618 797 30 10 0 chr4 4415154 4415254 -151214866 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 4 618 11384 193 39 14 chr4 4415254 4417970 -151212150 - Lx5 LINE L1 -722 6738 3731 4 618 1039 161 310 9 chr4 4417970 4418289 -151211831 + RLTR9F LTR ERVK 1 415 0 4 618 11384 184 28 15 chr4 4418289 4418524 -151211596 - Lx5 LINE L1 -2147 3730 3498 4 618 3522 180 14 26 chr4 4418527 4419257 -151210863 - Lx5 LINE L1 -3392 2485 1765 4 618 291 170 38 0 chr4 4419247 4419300 -151210820 - Lx5 LINE L1 -4391 1486 1432 4 618 7441 86 2 0 chr4 4419297 4420428 -151209692 + L1_Mus2 LINE L1 5432 6564 -2 4 618 1539 203 38 80 chr4 4420448 4421037 -151209083 - Lx5 LINE L1 -4449 1428 879 4 618 229 340 128 13 chr4 4421927 4422076 -151208044 + LTR88b LTR Gypsy? 647 812 -25 4 618 339 25 0 0 chr4 4422145 4422185 -151207935 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 618 498 167 39 0 chr4 4423189 4423291 -151206829 + Lx4A LINE L1 6952 7057 -1 4 618 181 348 41 57 chr4 4424782 4424904 -151205216 - MIRb SINE MIR -30 238 119 4 618 490 305 220 21 chr4 4425602 4425843 -151204277 + B4A SINE B4 1 289 -3 4 618 23 33 0 0 chr4 4426752 4426782 -151203338 + AT_rich Low_complexity Low_complexity 1 30 0 4 618 200 182 45 0 chr4 4426929 4426973 -151203147 - L3 LINE CR1 -713 3776 3731 4 618 744 194 60 54 chr4 4427338 4427523 -151202597 - B2_Mm2 SINE B2 -7 188 3 4 618 478 257 55 0 chr4 4427576 4427685 -151202435 - RSINE1 SINE B4 -21 144 30 4 618 423 0 0 0 chr4 4427786 4427833 -151202287 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 618 832 138 0 116 chr4 4427840 4428004 -151202116 - B1_Mus2 SINE Alu -2 145 1 4 618 914 289 97 30 chr4 4428678 4429189 -151200931 + L1MA7 LINE L1 4986 5550 -741 4 618 360 0 0 0 chr4 4429189 4429229 -151200891 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 618 914 296 117 48 chr4 4429229 4429734 -151200386 + L1MA7 LINE L1 5551 6075 -216 4 618 229 242 16 0 chr4 4429921 4429983 -151200137 - Lx7 LINE L1 -29 7667 7605 4 618 243 125 0 0 chr4 4430002 4430042 -151200078 + (A)n Simple_repeat Simple_repeat 1 40 0 4 618 911 317 8 60 chr4 4430106 4430438 -151199682 - Lx7 LINE L1 -384 7312 6993 4 618 3366 33 5 0 chr4 4430438 4430830 -151199290 + MTA_Mm LTR MaLR 3 396 0 4 618 911 317 8 60 chr4 4430830 4430849 -151199271 - Lx7 LINE L1 -704 6992 6979 4 618 509 207 23 157 chr4 4430884 4431056 -151199064 - MTE2b LTR MaLR -228 151 3 5 618 638 171 23 0 chr4 4432125 4432254 -151197866 - Lx7 LINE L1 -2 7694 7563 5 618 213 159 0 0 chr4 4433283 4433327 -151196793 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 618 780 241 231 14 chr4 4433768 4434054 -151196066 + RMER20B LTR ERVK 1 335 -292 5 618 423 119 0 0 chr4 4434054 4434121 -151195999 + (TATG)n Simple_repeat Simple_repeat 2 68 0 5 618 683 217 148 19 chr4 4434121 4434232 -151195888 + RMER20B LTR ERVK 336 474 -153 5 618 366 326 0 54 chr4 4434880 4435037 -151195083 - MLT1B LTR MaLR -325 142 1 5 618 193 260 20 0 chr4 4435320 4435370 -151194750 - L2 LINE L2 -598 2821 2771 5 618 363 337 93 35 chr4 4435950 4436122 -151193998 + MER44B DNA MER2_type 89 270 -280 5 618 351 0 0 0 chr4 4436938 4436977 -151193143 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 618 229 301 32 11 chr4 4438114 4438208 -151191912 - MER117 DNA MER1_type -57 140 45 5 618 5338 71 30 0 chr4 4439013 4439716 -151190404 + L1_Mus1 LINE L1 5844 6567 0 5 618 22 0 0 0 chr4 4439722 4439744 -151190376 + AT_rich Low_complexity Low_complexity 1 22 0 5 618 3333 31 23 0 chr4 4441450 4441903 -151188217 - L1Md_F2 LINE L1 -656 5926 5466 5 618 4997 62 2 0 chr4 4441903 4442531 -151187589 + L1Md_F2 LINE L1 5941 6569 -13 5 618 917 64 8 0 chr4 4442536 4442661 -151187459 + (GAAA)n Simple_repeat Simple_repeat 2 127 0 5 618 2311 174 106 25 chr4 4442943 4443472 -151186648 - RMER15 LTR ERVL -3 572 1 5 618 1441 201 153 11 chr4 4443573 4443940 -151186180 + MTD LTR MaLR 1 419 0 5 618 509 232 9 26 chr4 4443941 4444056 -151186064 + MTE2a LTR MaLR 265 377 -2 5 618 2765 182 17 34 chr4 4444135 4444664 -151185456 - RLTR28 LTR ERVL -4 520 1 5 618 663 274 195 71 chr4 4444664 4444827 -151185293 + MTE-int LTR MaLR 59 214 -1044 5 618 2106 181 121 19 chr4 4444827 4445070 -151185050 - RLTR12B LTR ERVK 0 528 270 5 618 513 0 0 0 chr4 4445070 4445127 -151184993 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 618 2106 181 121 19 chr4 4445127 4445362 -151184758 - RLTR12B LTR ERVK -259 269 2 5 618 1532 281 168 50 chr4 4445362 4446048 -151184072 + MTE-int LTR MaLR 215 1370 -210 5 618 568 292 101 54 chr4 4447180 4447477 -151182643 + MTE2a LTR MaLR 66 376 -3 5 618 763 231 138 26 chr4 4448288 4448615 -151181505 - RMER21B LTR ERV1 -112 835 347 5 618 273 350 77 77 chr4 4449086 4449416 -151180704 + ORR1E LTR MaLR 56 384 0 5 618 547 225 136 94 chr4 4450292 4450527 -151179593 + L1_Mur3 LINE L1 2069 2313 -3567 5 618 285 304 0 0 chr4 4451184 4451286 -151178834 + (CA)n Simple_repeat Simple_repeat 2 103 0 5 618 816 257 58 32 chr4 4451373 4451562 -151178558 + B3 SINE B2 18 211 -5 5 618 3152 291 65 34 chr4 4451606 4452464 -151177656 + L1_Mur3 LINE L1 1685 2573 -3307 5 618 180 0 0 0 chr4 4452464 4452484 -151177636 + (ATTAG)n Simple_repeat Simple_repeat 1 20 0 5 618 407 106 15 0 chr4 4452487 4452553 -151177567 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 618 3152 291 65 34 chr4 4452553 4453370 -151176750 + L1_Mur3 LINE L1 2574 3416 -2464 5 618 1350 255 76 0 chr4 4453358 4453739 -151176381 + L1_Mur3 LINE L1 3675 4084 -1796 5 618 282 29 0 0 chr4 4453807 4453842 -151176278 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 618 288 154 0 0 chr4 4454778 4454830 -151175290 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 618 270 279 87 25 chr4 4454947 4455101 -151175019 - MLT1A1 LTR MaLR -18 390 184 5 619 361 283 89 34 chr4 4456784 4457064 -151173056 - L1MA4 LINE L1 -358 5939 5636 5 619 774 273 151 29 chr4 4457220 4458071 -151172049 - L1MA4 LINE L1 -757 5386 4404 5 619 1346 252 67 10 chr4 4458090 4458535 -151171585 - Lx2B LINE L1 -168 6832 6135 5 619 927 271 149 19 chr4 4458673 4459090 -151171030 - L1MA4 LINE L1 -1639 4241 3771 5 619 1293 289 101 12 chr4 4459107 4459674 -151170446 - Lx8 LINE L1 -7 7466 6850 5 619 928 294 45 24 chr4 4459677 4460182 -151169938 - L1MA4 LINE L1 -3857 2023 1508 5 619 1096 126 32 16 chr4 4461224 4461409 -151168711 - B2_Mm2 SINE B2 -6 189 2 5 619 232 170 57 0 chr4 4461591 4461644 -151168476 + A-rich Low_complexity Low_complexity 3 58 0 5 619 21 0 0 0 chr4 4461898 4461919 -151168201 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 49 15 0 15 chr4 4462850 4462880 -151167240 + AT_rich Low_complexity Low_complexity 1 30 0 5 619 1104 88 0 0 chr4 4462880 4463027 -151167093 + B1_Mus2 SINE Alu 1 147 0 5 619 49 15 0 15 chr4 4463027 4463063 -151167057 + AT_rich Low_complexity Low_complexity 1 36 0 5 619 21 0 0 0 chr4 4463083 4463104 -151167016 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 484 296 15 15 chr4 4463820 4463957 -151166163 + MTEa LTR MaLR 5 141 -238 5 619 64 26 0 0 chr4 4465688 4465766 -151164354 + AT_rich Low_complexity Low_complexity 1 78 0 5 619 247 348 66 33 chr4 4465874 4466085 -151164035 - L1M5 LINE L1 -572 5552 5335 5 619 21 71 0 0 chr4 4466787 4466829 -151163291 + AT_rich Low_complexity Low_complexity 1 42 0 5 619 413 119 40 0 chr4 4469036 4469137 -151160983 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 619 198 167 0 0 chr4 4469906 4469942 -151160178 + T-rich Low_complexity Low_complexity 3 38 0 5 619 514 286 50 27 chr4 4470967 4471226 -151158894 + L1MA10 LINE L1 6068 6332 -2 5 619 536 283 91 58 chr4 4472689 4473207 -151156913 + L1M4 LINE L1 2837 3371 -2775 5 619 216 359 0 0 chr4 4473342 4473406 -151156714 + ID4 SINE ID 6 69 -14 5 619 234 347 69 30 chr4 4473584 4473597 -151156523 - B1F2 SINE Alu -29 120 19 5 619 281 329 47 0 chr4 4473597 4473682 -151156438 - ID_B1 SINE B4 -36 188 100 5 619 310 240 146 76 chr4 4473696 4473854 -151156266 + Lx8 LINE L1 7305 7473 0 5 619 22 0 0 0 chr4 4473993 4474015 -151156105 + AT_rich Low_complexity Low_complexity 1 22 0 5 619 739 188 18 0 chr4 4474368 4474533 -151155587 + CT-rich Low_complexity Low_complexity 2 169 0 5 619 7716 65 21 7 chr4 4474539 4476213 -151153907 - L1Md_F2 LINE L1 0 6582 4887 5 619 301 73 35 35 chr4 4476213 4476270 -151153850 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 5 619 4761 106 84 3 chr4 4476274 4477014 -151153106 - Lx LINE L1 -6 6648 5849 5 619 2224 138 25 17 chr4 4477014 4477420 -151152700 - RLTR9E LTR ERVK 0 409 1 5 619 524 79 0 50 chr4 4477420 4477500 -151152620 - MMETn-int LTR ERVK 0 7406 7331 5 619 2165 184 116 4 chr4 4477500 4477985 -151152135 - RLTR13D6 LTR ERVK -363 539 1 5 619 1575 136 8 8 chr4 4477997 4478249 -151151871 - ETnERV3-int LTR ERVK -28 5780 5529 5 619 329 97 0 75 chr4 4478262 4478329 -151151791 - RLTR45-int LTR ERVK -1172 6072 6011 5 619 3201 176 12 39 chr4 4478404 4479427 -151150693 - MMETn-int LTR ERVK -1697 3147 2473 5 619 5197 182 120 80 chr4 4479445 4480382 -151149738 - ETnERV2-int LTR ERVK -3316 4090 2477 5 619 2916 69 59 112 chr4 4480382 4480891 -151149229 + RLTR45 LTR ERVK 1 482 0 5 619 5197 143 117 80 chr4 4480891 4481181 -151148939 - ETnERV2-int LTR ERVK -2275 3533 3204 5 619 192 254 143 0 chr4 4481181 4481244 -151148876 + MER5A DNA MER1_type 9 80 -109 5 619 5197 143 117 80 chr4 4481244 4481563 -151148557 - ETnERV2-int LTR ERVK -2275 3203 2838 5 619 3952 72 2 2 chr4 4481563 4482066 -151148054 + RLTR1C LTR ERV1 1 503 0 5 619 2687 185 135 158 chr4 4482066 4482310 -151147810 - ETnERV2-int LTR ERVK -2971 2837 2592 5 619 1051 187 90 68 chr4 4482339 4482660 -151147460 - ETnERV2-int LTR ERVK -5613 1793 1466 5 619 662 125 0 19 chr4 4482654 4482760 -151147360 - ETnERV2-int LTR ERVK -4626 780 677 5 619 667 166 182 13 chr4 4482746 4482905 -151147215 - ETnERV2-int LTR ERVK -5080 326 141 5 619 293 158 35 17 chr4 4483348 4483406 -151146714 - RLTR45-int LTR ERVK -5095 2149 2091 5 619 551 224 52 138 chr4 4483396 4483722 -151146398 - MMETn-int LTR ERVK -4545 299 2 5 619 600 143 9 26 chr4 4483724 4483839 -151146281 - RLTR9C LTR ERVK 0 393 281 5 619 1837 103 19 8 chr4 4483841 4484139 -151145981 - Lx LINE L1 -800 5854 5592 5 619 505 300 42 30 chr4 4484140 4484305 -151145815 - RLTR20B1 LTR ERVK 0 563 397 5 619 723 283 0 32 chr4 4484305 4484553 -151145567 - Lx7 LINE L1 -1668 6028 5789 5 619 2348 196 93 13 chr4 4484571 4484627 -151145493 - Lx7 LINE L1 -214 5666 5610 5 619 2916 35 3 0 chr4 4484627 4484972 -151145148 + ORR1A1 LTR MaLR 1 346 0 5 619 2348 196 93 13 chr4 4484972 4485443 -151144677 - Lx7 LINE L1 -271 5609 5097 5 619 47 67 0 0 chr4 4485443 4485532 -151144588 + AT_rich Low_complexity Low_complexity 1 89 0 5 619 2549 259 102 57 chr4 4486518 4487616 -151142504 + RLTR42-int LTR ERVK 4260 5406 -116 5 619 1480 38 0 21 chr4 4488367 4488553 -151141567 - L1_Mus1 LINE L1 -579 5988 5807 5 619 4562 63 17 0 chr4 4488554 4489128 -151140992 + L1_Mus1 LINE L1 5984 6567 0 5 619 327 314 35 35 chr4 4489195 4489337 -151140783 + L1M4 LINE L1 4885 5026 -1120 5 619 198 128 0 0 chr4 4489412 4489451 -151140669 + (A)n Simple_repeat Simple_repeat 1 39 0 5 619 251 252 150 39 chr4 4489571 4489724 -151140396 + L1M4 LINE L1 5302 5471 -703 5 619 227 145 48 0 chr4 4489771 4489854 -151140266 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 619 1740 102 38 11 chr4 4491938 4492225 -151137895 - RLTR10A LTR ERVK 0 411 117 5 619 306 0 0 0 chr4 4493046 4493080 -151137040 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 619 484 339 0 0 chr4 4495539 4495654 -151134466 + B1F SINE Alu 1 115 -34 5 619 1328 177 46 48 chr4 4496068 4496393 -151133727 - RMER16 LTR ERVK -119 414 1 5 619 1600 253 56 39 chr4 4496443 4496929 -151133191 + RMER5 LTR ERV1 25 518 -16 5 619 26 82 0 0 chr4 4497146 4497207 -151132913 + AT_rich Low_complexity Low_complexity 1 61 0 5 619 1065 116 0 0 chr4 4497278 4497425 -151132695 - B1_Mm SINE Alu 0 147 1 5 619 237 83 0 0 chr4 4497500 4497536 -151132584 + (T)n Simple_repeat Simple_repeat 1 36 0 5 619 1502 188 109 9 chr4 4497653 4497975 -151132145 - ORR1B1 LTR MaLR 0 394 41 5 619 788 151 10 35 chr4 4497982 4498130 -151131990 - ORR1B1-int LTR MaLR 0 1963 1840 5 619 268 157 42 28 chr4 4498131 4498203 -151131917 - ORR1B1 LTR MaLR -256 73 1 5 619 231 167 0 0 chr4 4498177 4498219 -151131901 - MER67C LTR ERV1 -178 533 492 5 619 443 310 23 65 chr4 4498219 4498436 -151131684 - Lx9 LINE L1 -431 7213 7006 5 619 774 311 86 18 chr4 4498472 4499209 -151130911 - L1M4 LINE L1 -3137 3009 2216 5 619 312 27 0 0 chr4 4499407 4499444 -151130676 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 619 383 291 159 6 chr4 4499824 4500000 -151130120 - L1M4 LINE L1 -3423 2723 2521 5 619 762 257 78 74 chr4 4500012 4500603 -151129517 - L1MEc LINE L1 -3623 2914 2319 1 619 525 322 48 21 chr4 4500764 4501100 -151129020 - L1MEc LINE L1 -4893 1740 1396 1 619 786 346 66 20 chr4 4501273 4501822 -151128298 - L1MEc LINE L1 -5777 841 268 1 619 691 50 30 0 chr4 4501833 4501932 -151128188 + (TTCTC)n Simple_repeat Simple_repeat 4 105 0 2 619 362 132 0 0 chr4 4502299 4502352 -151127768 - ORR1C1 LTR MaLR -2 382 330 3 619 180 0 0 0 chr4 4502704 4502724 -151127396 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 619 450 0 0 0 chr4 4503163 4503213 -151126907 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 619 907 73 22 7 chr4 4503570 4503708 -151126412 - L1_Mus2 LINE L1 0 6566 6427 6 619 1594 180 49 7 chr4 4503710 4504017 -151126103 - ORR1C1 LTR MaLR -58 320 1 3 619 279 0 0 0 chr4 4504208 4504239 -151125881 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 619 663 218 0 0 chr4 4505379 4505666 -151124454 + (TG)n Simple_repeat Simple_repeat 1 287 0 8 619 259 320 0 20 chr4 4507499 4507598 -151122522 + A-rich Low_complexity Low_complexity 5 101 0 9 619 915 239 24 5 chr4 4508201 4508411 -151121709 + B3 SINE B2 1 214 -2 1 619 1207 92 69 0 chr4 4509083 4509257 -151120863 - B2_Mm2 SINE B2 -8 187 2 1 619 295 248 102 14 chr4 4510031 4510178 -151119942 + L1M2 LINE L1 5207 5366 -777 1 619 1670 206 30 16 chr4 4510559 4510930 -151119190 + ORR1C1 LTR MaLR 1 376 -2 1 619 621 339 21 10 chr4 4511354 4511643 -151118477 + L1MC1 LINE L1 6037 6328 -5 1 619 1064 84 0 8 chr4 4511768 4512169 -151117951 + (CA)n Simple_repeat Simple_repeat 1 397 0 1 619 303 96 0 0 chr4 4512174 4512226 -151117894 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 619 5847 153 3 6 chr4 4512584 4513602 -151116518 - Lx LINE L1 -765 5118 4104 1 619 6897 122 52 5 chr4 4513605 4515045 -151115075 + Lx LINE L1 5128 6651 -3 1 619 498 198 0 0 chr4 4515070 4515151 -151114969 + B3 SINE B2 7 87 -129 1 619 414 0 0 0 chr4 4515151 4515197 -151114923 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 619 232 341 22 11 chr4 4515219 4515238 -151114882 - ID_B1 SINE B4 -133 91 2 2 619 245 343 14 0 chr4 4515238 4515308 -151114812 - ID4_ SINE ID -11 72 2 2 619 1224 41 0 7 chr4 4515490 4515639 -151114481 + B1_Mus1 SINE Alu 1 148 0 2 619 207 191 0 0 chr4 4515639 4515686 -151114434 + A-rich Low_complexity Low_complexity 4 50 0 2 619 248 214 0 0 chr4 4516128 4516184 -151113936 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 2 619 23 78 0 0 chr4 4516189 4516240 -151113880 + AT_rich Low_complexity Low_complexity 1 51 0 2 619 554 293 51 22 chr4 4517060 4517077 -151113043 - B3A SINE B2 -15 183 167 2 619 333 47 0 0 chr4 4517077 4517120 -151113000 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 619 554 293 51 22 chr4 4517120 4517280 -151112840 - B3A SINE B2 -32 166 1 2 619 353 297 11 0 chr4 4517306 4517397 -151112723 - PB1D10 SINE Alu -12 105 14 2 619 210 411 48 16 chr4 4517765 4517891 -151112229 - ID_B1 SINE B4 -35 189 60 2 619 29 0 0 0 chr4 4519459 4519488 -151110632 + AT_rich Low_complexity Low_complexity 1 29 0 3 619 335 341 23 8 chr4 4520081 4520214 -151109906 + L1MEg LINE L1 848 982 -5102 3 619 228 233 108 137 chr4 4520565 4520704 -151109416 - MLT1A1 LTR MaLR -251 157 23 3 619 332 389 37 22 chr4 4520877 4521145 -151108975 - MLT1D LTR MaLR 0 505 234 3 619 202 310 70 0 chr4 4521423 4521494 -151108626 + MIR SINE MIR 122 197 -65 3 619 213 39 0 0 chr4 4521600 4521626 -151108494 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 619 546 309 15 0 chr4 4521627 4521763 -151108357 - B3A SINE B2 -59 139 2 3 619 884 248 45 15 chr4 4521812 4522013 -151108107 - B3 SINE B2 -2 214 8 3 619 867 78 127 37 chr4 4522393 4522527 -151107593 + B1_Mus1 SINE Alu 2 147 -1 3 619 207 93 0 65 chr4 4522527 4522573 -151107547 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 3 619 253 273 38 66 chr4 4522833 4522939 -151107181 + MLT1A1 LTR MaLR 1 103 -305 4 619 6102 175 88 24 chr4 4523997 4525390 -151104730 - Lx6 LINE L1 -1496 5964 4478 4 619 541 191 7 93 chr4 4525390 4525529 -151104591 - RMER17C-int LTR ERVK -518 2720 2594 4 619 288 211 0 0 chr4 4525532 4525584 -151104536 + LSU-rRNA_Hsa rRNA rRNA 4202 4253 -782 4 619 857 180 9 57 chr4 4525584 4525796 -151104324 - RMER17C-int LTR ERVK -706 2532 2331 4 619 5851 70 32 4 chr4 4525812 4526601 -151103519 - L1Md_F2 LINE L1 -13 6569 5759 4 619 4502 69 2 50 chr4 4526601 4527240 -151102880 + L1Md_F2 LINE L1 5158 5765 -118 4 619 281 182 18 29 chr4 4527241 4527330 -151102790 - RMER17C-int LTR ERVK -905 2333 2261 4 619 2699 205 98 23 chr4 4527439 4528259 -151101861 - RMER17C-int LTR ERVK -3491 2646 1409 4 619 281 217 172 11 chr4 4528306 4528399 -151101721 - RMER17C-int LTR ERVK -3810 2327 2220 4 619 338 195 26 13 chr4 4528450 4528528 -151101592 - RMER17C-int LTR ERVK -1814 1424 1346 4 619 363 264 11 0 chr4 4528611 4528702 -151101418 - RMER17C-int LTR ERVK -5059 1078 987 4 619 11200 157 27 121 chr4 4528920 4531459 -151098661 - L1_Mus3 LINE L1 -3 6635 4451 4 619 399 21 0 0 chr4 4531459 4531507 -151098613 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 619 11200 204 26 201 chr4 4531507 4531993 -151098127 - L1_Mus3 LINE L1 -1430 4450 4375 4 619 623 67 11 0 chr4 4531993 4532082 -151098038 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 619 11200 204 26 201 chr4 4532082 4533404 -151096716 - L1_Mus3 LINE L1 -1506 4374 3135 4 619 1062 101 0 0 chr4 4533404 4533562 -151096558 + (TTTTC)n Simple_repeat Simple_repeat 3 160 0 4 619 11200 204 26 201 chr4 4533562 4534633 -151095487 - L1_Mus3 LINE L1 -2746 3134 2152 4 619 183 42 0 0 chr4 4534633 4534657 -151095463 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 619 11200 204 26 201 chr4 4534657 4534748 -151095372 - L1_Mus3 LINE L1 -3729 2151 2065 4 619 237 65 0 0 chr4 4534748 4534779 -151095341 + (TGG)n Simple_repeat Simple_repeat 2 32 0 5 619 11200 201 31 152 chr4 4534779 4535762 -151094358 - L1_Mus3 LINE L1 -3816 2064 1094 4 619 2616 10 0 0 chr4 4535751 4536045 -151094075 + L1Md_T LINE L1 5293 5586 -297 5 619 8948 5 1 0 chr4 4536045 4537040 -151093080 + L1Md_T LINE L1 5587 6582 0 5 619 2251 235 173 14 chr4 4537041 4537952 -151092168 - L1_Mus3 LINE L1 -6616 1112 57 4 619 225 315 14 0 chr4 4537953 4538026 -151092094 + MLT1C LTR MaLR 392 465 -2 5 619 1222 28 0 0 chr4 4538258 4538399 -151091721 + B1_Mm SINE Alu 1 141 -6 5 619 197 0 71 0 chr4 4538406 4538434 -151091686 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 619 1537 164 95 149 chr4 4538481 4538924 -151091196 - RLTR23 LTR ERV1 -2 428 10 5 619 1662 244 145 5 chr4 4539476 4539896 -151090224 - RMER1C Other Other -299 1043 565 5 619 431 331 50 7 chr4 4539957 4540097 -151090023 - MLT1A0 LTR MaLR -21 344 199 5 619 191 109 0 61 chr4 4540254 4540303 -151089817 + T-rich Low_complexity Low_complexity 5 50 0 5 619 641 328 111 23 chr4 4541750 4542137 -151087983 + MER68 LTR ERVL 9 429 -134 5 619 184 100 50 0 chr4 4542747 4542787 -151087333 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 619 357 24 0 0 chr4 4543005 4543047 -151087073 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 619 495 284 97 0 chr4 4543222 4543356 -151086764 + MTE2b LTR MaLR 15 161 -218 6 619 732 283 0 21 chr4 4543369 4543557 -151086563 + MTE2b LTR MaLR 194 377 -2 6 619 229 135 0 0 chr4 4543595 4543632 -151086488 + B3A SINE B2 2 38 -160 6 619 227 192 154 0 chr4 4543630 4543682 -151086438 + B3 SINE B2 148 207 -9 6 619 21 36 0 0 chr4 4543682 4543710 -151086410 + AT_rich Low_complexity Low_complexity 1 28 0 6 619 1576 16 28 0 chr4 4543712 4543894 -151086226 + B2_Mm1t SINE B2 2 188 -5 6 619 21 57 0 0 chr4 4544468 4544503 -151085617 + AT_rich Low_complexity Low_complexity 1 35 0 6 619 22 0 0 0 chr4 4545164 4545186 -151084934 + AT_rich Low_complexity Low_complexity 1 22 0 6 619 231 348 60 74 chr4 4545513 4545730 -151084390 + MLT1A LTR MaLR 155 368 -6 6 619 2709 161 60 8 chr4 4545805 4546325 -151083795 - Lx5 LINE L1 -853 6197 5651 6 619 3891 192 16 33 chr4 4546328 4547064 -151083056 + Lx5 LINE L1 6206 6929 -121 6 619 3930 147 51 52 chr4 4547076 4547902 -151082218 + RLTR13C2 LTR ERVK 1 1033 0 7 619 436 192 96 0 chr4 4547905 4548009 -151082111 + Lx5 LINE L1 6934 7047 -3 6 619 330 320 64 0 chr4 4548524 4548649 -151081471 + MER2 DNA MER2_type 3 135 -210 7 619 21 57 0 0 chr4 4550025 4550060 -151080060 + AT_rich Low_complexity Low_complexity 1 35 0 7 619 313 309 36 36 chr4 4550661 4550896 -151079224 + L1ME1 LINE L1 5854 6085 -94 7 619 207 222 19 0 chr4 4554936 4554990 -151075130 + A-rich Low_complexity Low_complexity 3 57 0 7 619 247 212 92 50 chr4 4555157 4555276 -151074844 + Lx9 LINE L1 7512 7635 -9 7 619 1428 39 51 0 chr4 4555292 4555470 -151074650 - B2_Mm1a SINE B2 -5 188 2 7 619 267 79 0 0 chr4 4556096 4556134 -151073986 + (A)n Simple_repeat Simple_repeat 1 38 0 7 619 758 11 11 0 chr4 4556303 4556394 -151073726 + (TTC)n Simple_repeat Simple_repeat 2 93 0 7 619 236 189 94 0 chr4 4556739 4556792 -151073328 + L1MD LINE L1 4509 4566 -1580 7 619 1568 32 22 0 chr4 4557731 4557916 -151072204 + B2_Mm1t SINE B2 1 189 -4 8 619 542 319 0 0 chr4 4557982 4558123 -151071997 + B1F SINE Alu 1 141 -8 8 619 2528 160 80 6 chr4 4558964 4559442 -151070678 - RLTR11A LTR ERVK 0 528 16 8 619 639 112 0 0 chr4 4559772 4559870 -151070250 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 8 619 234 0 0 0 chr4 4563099 4563125 -151066995 + (T)n Simple_repeat Simple_repeat 1 26 0 8 619 401 299 101 15 chr4 4563334 4563602 -151066518 + L1MD3 LINE L1 7670 7960 -35 8 619 661 303 75 47 chr4 4563662 4563789 -151066331 - MER34A1 LTR ERV1 -95 492 373 8 619 568 25 0 36 chr4 4563789 4563873 -151066247 - L1Md_F2 LINE L1 -3 6579 6499 8 619 661 303 75 47 chr4 4563873 4564129 -151065991 - MER34A1 LTR ERV1 -215 372 98 8 619 661 215 12 42 chr4 4564131 4564296 -151065824 + G-rich Low_complexity Low_complexity 5 164 0 8 619 829 121 42 6 chr4 4564296 4564463 -151065657 + GA-rich Low_complexity Low_complexity 6 178 0 8 619 206 283 0 32 chr4 4564463 4564525 -151065595 + G-rich Low_complexity Low_complexity 3 62 0 9 619 283 143 0 0 chr4 4564470 4564512 -151065608 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 9 619 767 94 17 0 chr4 4564700 4564817 -151065303 + (TTTC)n Simple_repeat Simple_repeat 4 122 0 9 619 305 238 23 23 chr4 4565382 4565468 -151064652 + L1MC4a LINE L1 7555 7640 -242 9 619 704 216 273 0 chr4 4566227 4566403 -151063717 + URR1B DNA MER1_type 1 224 -1 9 619 18555 43 0 0 chr4 4566556 4568953 -151061167 + L1Md_F2 LINE L1 3190 5585 -298 9 619 7948 50 10 1 chr4 4568954 4569940 -151060180 + L1Md_F2 LINE L1 5587 6581 -1 9 619 423 0 0 0 chr4 4570505 4570552 -151059568 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 619 335 371 70 20 chr4 4570605 4570806 -151059314 - LTR89 LTR ERVL? -109 770 560 9 619 267 250 26 26 chr4 4570980 4571058 -151059062 + ID4_ SINE ID 1 78 -5 9 619 1208 69 91 6 chr4 4571065 4571240 -151058880 - B2_Mm2 SINE B2 -5 190 1 9 619 1145 62 7 0 chr4 4573016 4573162 -151056958 + B1_Mus2 SINE Alu 1 147 0 1 619 234 0 0 0 chr4 4573165 4573191 -151056929 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 619 6323 60 4 23 chr4 4573455 4574279 -151055841 - RLTR13C2 LTR ERVK 0 808 1 1 619 237 311 44 0 chr4 4574334 4574424 -151055696 - MIRb SINE MIR -45 223 130 1 619 204 125 0 0 chr4 4575028 4575060 -151055060 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 1 619 274 261 0 14 chr4 4575487 4575557 -151054563 + MTD LTR MaLR 8 76 -343 1 619 558 136 44 31 chr4 4575561 4575720 -151054400 - RLTR31_Mur LTR ERVK -330 223 63 1 619 413 218 67 13 chr4 4575732 4575881 -151054239 - RLTR31_Mur LTR ERVK -396 157 1 1 619 555 230 112 28 chr4 4575897 4576040 -151054080 + RLTR31_Mur LTR ERVK 399 553 0 1 619 1191 205 43 35 chr4 4576044 4576302 -151053818 + MTD LTR MaLR 97 356 -63 1 619 238 390 9 0 chr4 4576530 4576635 -151053485 - MLT1I LTR MaLR -17 394 289 1 619 643 316 14 46 chr4 4576978 4577194 -151052926 + B3A SINE B2 3 211 -5 1 619 225 94 0 0 chr4 4577320 4577352 -151052768 + (T)n Simple_repeat Simple_repeat 1 32 0 1 619 405 88 25 12 chr4 4578116 4578197 -151051923 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 619 919 161 0 0 chr4 4578200 4578337 -151051783 - B1_Mus1 SINE Alu -11 137 1 1 619 203 245 43 0 chr4 4578639 4578733 -151051387 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 619 266 338 45 23 chr4 4579074 4579207 -151050913 + MER89 LTR ERV1 1 136 -423 1 619 3226 19 0 3 chr4 4579266 4579634 -151050486 + IAPLTR1_Mm LTR ERVK 1 367 0 1 619 52793 24 15 7 chr4 4579634 4586056 -151044064 + IAPEz-int LTR ERVK 8 6481 0 1 619 3226 19 0 3 chr4 4586056 4586424 -151043696 + IAPLTR1_Mm LTR ERVK 1 367 0 1 619 784 264 178 11 chr4 4586515 4586791 -151043329 + RMER15 LTR ERVL 27 348 -227 1 619 551 171 221 15 chr4 4587024 4587155 -151042965 + RLTR27 LTR ERVK 1 158 -151 1 619 414 264 12 43 chr4 4587175 4587337 -151042783 + A-rich Low_complexity Low_complexity 4 160 0 1 620 245 53 0 50 chr4 4587528 4587568 -151042552 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 1 620 2632 301 43 35 chr4 4587632 4589443 -151040677 + MMERVK10C-int LTR ERVK 3653 5478 -2103 1 620 321 300 18 42 chr4 4589660 4589827 -151040293 + MMERVK10C-int LTR ERVK 6907 7069 -512 1 620 1355 165 4 23 chr4 4589961 4590227 -151039893 + MMERVK10C-int LTR ERVK 7321 7581 0 1 620 2076 105 13 16 chr4 4590227 4590537 -151039583 + RLTR27 LTR ERVK 1 309 0 1 620 272 235 59 0 chr4 4590934 4591019 -151039101 + MER89 LTR ERV1 468 557 -2 1 620 777 279 44 0 chr4 4591764 4592036 -151038084 + Lx7 LINE L1 5589 5872 -1824 1 620 4056 100 3 5 chr4 4592086 4592659 -151037461 - L1_Mus4 LINE L1 0 6636 6065 1 620 1210 281 74 25 chr4 4593043 4593478 -151036642 + Lx8 LINE L1 6242 6697 -776 1 620 276 301 37 55 chr4 4593865 4593974 -151036146 + ID4_ SINE ID 1 107 -45 1 620 246 62 0 0 chr4 4594017 4594049 -151036071 + (CAGGG)n Simple_repeat Simple_repeat 1 32 0 1 620 4281 81 11 0 chr4 4594250 4594807 -151035313 + L1_Mus2 LINE L1 6004 6566 0 1 620 651 88 0 0 chr4 4594819 4594910 -151035210 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 1 620 1069 267 91 20 chr4 4595097 4595449 -151034671 - MTEb LTR MaLR -2 377 1 1 620 194 387 9 43 chr4 4596028 4596144 -151033976 - MIRm SINE MIR -154 122 11 1 620 331 312 26 9 chr4 4597413 4597526 -151032594 + PB1 SINE Alu 11 125 -2 1 620 2986 93 0 2 chr4 4597906 4598303 -151031817 - MTA_Mm LTR MaLR 0 396 1 1 620 2644 226 97 30 chr4 4598367 4598820 -151031300 + L1_Mur3 LINE L1 443 906 -6822 1 620 1955 198 8 8 chr4 4598820 4599187 -151030933 - ORR1B2 LTR MaLR 0 367 1 1 620 3597 182 45 97 chr4 4599187 4600590 -151029530 + L1_Mur3 LINE L1 907 2266 -3614 1 620 6608 207 76 57 chr4 4600590 4602387 -151027733 - RLTR22_Mur LTR ERVK 0 1848 18 1 620 873 171 21 0 chr4 4602387 4602574 -151027546 + L1_Mur3 LINE L1 2279 2469 -3411 1 620 1796 162 23 85 chr4 4602597 4603034 -151027086 + RMER17C LTR ERVK 1 410 0 1 620 473 264 137 77 chr4 4603034 4603486 -151026634 + RMER17C-int LTR ERVK 1 479 -2759 1 620 615 206 216 40 chr4 4603829 4604240 -151025880 + RMER17C-int LTR ERVK 1508 1990 -1248 1 620 282 165 292 0 chr4 4604254 4604378 -151025742 + RMER17C-int LTR ERVK 2170 2329 -909 1 620 920 96 83 6 chr4 4604415 4604583 -151025537 + RMER17C-int LTR ERVK 2577 2757 -481 1 620 1921 140 75 8 chr4 4604603 4604963 -151025157 + RMER17C-int LTR ERVK 2836 3219 -19 1 620 1711 158 41 60 chr4 4605011 4605429 -151024691 + RMER17C LTR ERVK 1 410 0 1 620 5795 206 22 196 chr4 4605429 4606983 -151023137 + L1_Mur3 LINE L1 2471 3785 -2095 1 620 5189 151 20 2 chr4 4606983 4607861 -151022259 - Lx2 LINE L1 -2 6995 6102 1 620 5795 206 22 196 chr4 4607861 4610089 -151020031 + L1_Mur3 LINE L1 3786 5594 -286 1 620 19821 42 4 2 chr4 4610102 4612772 -151017348 - L1_Mm LINE L1 -226 5657 2984 1 620 1233 232 14 52 chr4 4612772 4612828 -151017292 + Lx7 LINE L1 5527 5581 -299 1 620 8167 32 7 9 chr4 4612828 4613827 -151016293 + L1Md_F3 LINE L1 5588 6584 0 1 620 3832 232 14 52 chr4 4613827 4613859 -151016261 + Lx7 LINE L1 5582 5609 -2087 1 620 1101 186 106 134 chr4 4613859 4613951 -151016169 - RLTR9C LTR ERVK 0 393 299 1 620 930 19 0 0 chr4 4613951 4614059 -151016061 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 620 1101 186 106 134 chr4 4614059 4614370 -151015750 - RLTR9C LTR ERVK -95 298 1 1 620 3832 239 31 45 chr4 4614370 4615446 -151014674 + Lx7 LINE L1 5610 6670 -1026 1 620 988 192 66 29 chr4 4615514 4615788 -151014332 + RCHARR1 DNA MER1_type 594 877 -97 1 620 277 323 40 0 chr4 4616192 4616291 -151013829 - L3 LINE CR1 -438 4051 3949 1 620 280 256 12 24 chr4 4616488 4616572 -151013548 - ID4_ SINE ID 0 83 1 1 620 185 341 62 52 chr4 4616735 4616831 -151013289 + MIR SINE MIR 5 101 -167 1 620 680 272 82 20 chr4 4617968 4618163 -151011957 - B3 SINE B2 -1 215 9 1 620 609 313 0 34 chr4 4618172 4618377 -151011743 - B3A SINE B2 0 198 1 1 620 252 86 0 0 chr4 4619527 4619562 -151010558 + (T)n Simple_repeat Simple_repeat 1 35 0 1 620 716 124 30 73 chr4 4619625 4619790 -151010330 - Lx2B LINE L1 0 7000 6843 1 620 5332 66 7 16 chr4 4619797 4620501 -151009619 + L1_Mus1 LINE L1 5870 6567 0 1 620 5409 142 21 21 chr4 4620545 4621358 -151008762 + L1_Mur2 LINE L1 3461 4278 -1599 1 620 4739 20 0 0 chr4 4621358 4621899 -151008221 + L1Md_A LINE L1 6041 6581 -1 1 620 5409 142 21 21 chr4 4621899 4622094 -151008026 + L1_Mur2 LINE L1 4279 4469 -1408 1 620 298 274 0 0 chr4 4622361 4622445 -151007675 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 1 620 229 264 0 23 chr4 4622445 4622616 -151007504 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 1 620 260 307 0 25 chr4 4622675 4622832 -151007288 + (CAGAGA)n Simple_repeat Simple_repeat 6 158 0 1 620 245 361 0 12 chr4 4622866 4622977 -151007143 + T-rich Low_complexity Low_complexity 1 109 0 1 620 396 0 0 0 chr4 4622977 4623021 -151007099 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 620 459 290 0 11 chr4 4623021 4623206 -151006914 + (TCTCTG)n Simple_repeat Simple_repeat 1 182 0 1 620 449 237 13 38 chr4 4623245 4623403 -151006717 + (TCTCTG)n Simple_repeat Simple_repeat 1 154 0 1 620 1249 247 61 36 chr4 4624704 4624908 -151005212 - ORR1D2 LTR MaLR 0 370 153 1 620 1060 172 113 0 chr4 4624908 4625111 -151005009 - URR1A DNA MER1_type 0 226 1 1 620 1249 247 61 36 chr4 4625111 4625267 -151004853 - ORR1D2 LTR MaLR -218 152 1 1 620 436 250 264 11 chr4 4626571 4626753 -151003367 - ORSL DNA Tip100 -18 257 30 1 620 183 42 0 0 chr4 4627092 4627116 -151003004 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 620 249 33 0 0 chr4 4628364 4628394 -151001726 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 620 252 286 39 0 chr4 4628600 4628677 -151001443 + PB1D7 SINE Alu 22 101 -19 1 620 21 57 0 0 chr4 4628758 4628793 -151001327 + AT_rich Low_complexity Low_complexity 1 35 0 1 620 323 226 0 56 chr4 4629337 4629426 -151000694 + MTEb LTR MaLR 278 361 -18 1 620 235 352 48 0 chr4 4629572 4629677 -151000443 - MIRb SINE MIR -45 223 114 1 620 378 0 0 0 chr4 4630080 4630122 -150999998 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 620 2152 254 43 24 chr4 4630128 4630785 -150999335 + Lx9 LINE L1 6675 7343 -301 1 620 225 192 121 0 chr4 4630882 4630981 -150999139 + Lx9 LINE L1 7534 7644 0 1 620 1383 303 44 28 chr4 4631412 4632131 -150997989 + Lx6 LINE L1 6457 7460 0 1 620 1037 96 0 7 chr4 4632571 4632709 -150997411 + B1_Mus1 SINE Alu 2 139 -9 1 620 681 13 0 0 chr4 4632709 4632787 -150997333 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 1 620 228 67 0 0 chr4 4632821 4632851 -150997269 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 1 620 321 68 0 0 chr4 4632851 4632894 -150997226 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 620 713 43 0 11 chr4 4632894 4632988 -150997132 + (GAAA)n Simple_repeat Simple_repeat 1 93 0 1 620 263 277 96 51 chr4 4633317 4633473 -150996647 + MamGypLTR2c LTR Gypsy 837 999 -69 1 620 475 199 43 43 chr4 4634529 4634713 -150995407 + Lx7 LINE L1 7449 7632 -64 1 620 639 0 0 0 chr4 4635210 4635281 -150994839 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 1 620 226 293 142 97 chr4 4635877 4636187 -150993933 + MamRep434 DNA TcMar 10 333 -93 1 620 3932 87 12 0 chr4 4636609 4637182 -150992938 + L1_Mm LINE L1 4993 5572 -311 1 620 469 59 0 0 chr4 4637183 4637251 -150992869 + L1_Mus1 LINE L1 6496 6563 -4 1 620 448 285 28 109 chr4 4637301 4637657 -150992463 + MLT1C LTR MaLR 53 434 -33 1 620 606 299 21 70 chr4 4638776 4638963 -150991157 + B3A SINE B2 6 183 -15 1 620 260 290 44 37 chr4 4639115 4639251 -150990869 - MLT1D LTR MaLR -146 359 223 1 620 396 0 0 0 chr4 4639265 4639309 -150990811 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 620 662 217 224 0 chr4 4639485 4639646 -150990474 - B3 SINE B2 -18 198 2 1 620 1334 273 103 38 chr4 4640505 4640981 -150989139 - Lx8 LINE L1 -339 7134 6628 1 620 1102 267 128 19 chr4 4640986 4641360 -150988760 - MTD LTR MaLR 0 419 5 1 620 680 294 72 34 chr4 4641430 4641722 -150988398 + Lx8 LINE L1 6255 6557 -916 1 620 243 0 0 0 chr4 4641934 4641961 -150988159 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 620 205 133 44 0 chr4 4641981 4642026 -150988094 + (TTG)n Simple_repeat Simple_repeat 3 49 0 1 620 310 284 67 22 chr4 4642127 4642217 -150987903 + B1F1 SINE Alu 2 95 -54 1 620 213 364 38 57 chr4 4642217 4642228 -150987892 + B4A SINE B4 87 185 -107 1 620 261 0 0 0 chr4 4642245 4642274 -150987846 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 620 537 16 0 0 chr4 4642274 4642335 -150987785 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 620 899 144 221 0 chr4 4643000 4643181 -150986939 - URR1A DNA MER1_type -5 221 1 1 620 302 342 27 27 chr4 4643620 4643731 -150986389 - MER81 DNA AcHobo -2 112 2 1 620 201 74 0 0 chr4 4644862 4644889 -150985231 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2 620 283 286 25 74 chr4 4645744 4645865 -150984255 - Tigger5 DNA MER2_type 0 2406 2292 2 620 446 306 108 5 chr4 4645866 4646060 -150984060 - Tigger5 DNA MER2_type -2173 233 20 2 620 184 298 35 0 chr4 4646660 4646717 -150983403 - MIRb SINE MIR -12 256 198 2 620 296 375 0 0 chr4 4646868 4646948 -150983172 - ID4_ SINE ID -2 81 2 2 620 345 315 0 61 chr4 4646948 4647080 -150983040 - PB1 SINE Alu -2 125 2 2 620 213 254 29 43 chr4 4647158 4647228 -150982892 - MER5A DNA MER1_type -1 188 120 2 620 640 149 19 9 chr4 4647304 4647412 -150982708 - PB1D9 SINE Alu -2 118 10 2 620 463 246 34 26 chr4 4647503 4647620 -150982500 + MLT1C LTR MaLR 321 438 -29 2 620 193 53 25 50 chr4 4648142 4648182 -150981938 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 620 255 352 93 62 chr4 4648971 4649292 -150980828 - ORR1E LTR MaLR -11 348 18 2 620 1222 252 64 0 chr4 4649608 4649874 -150980246 + B4A SINE B4 8 290 -2 2 620 1223 28 0 0 chr4 4651578 4651719 -150978401 + B1_Mm SINE Alu 1 141 -6 2 620 1089 81 0 0 chr4 4651721 4651870 -150978250 + (TA)n Simple_repeat Simple_repeat 2 150 0 2 620 364 334 70 27 chr4 4652329 4652658 -150977462 + L1MB7 LINE L1 5832 6174 -10 2 620 303 28 0 0 chr4 4652874 4652910 -150977210 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 620 396 0 0 0 chr4 4652930 4652974 -150977146 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 620 371 329 137 7 chr4 4652985 4653138 -150976982 - B4 SINE B4 -21 271 99 2 620 241 366 36 51 chr4 4653142 4653280 -150976840 + MIR SINE MIR 108 243 -19 2 620 461 193 226 9 chr4 4654136 4654251 -150975869 - B1_Mur4 SINE Alu -6 144 5 2 620 1786 174 47 11 chr4 4654499 4654864 -150975256 - ORR1C1 LTR MaLR 0 378 1 2 620 481 227 97 26 chr4 4655043 4655197 -150974923 - MER89 LTR ERV1 0 559 395 2 620 201 74 0 0 chr4 4655217 4655244 -150974876 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 620 519 294 99 28 chr4 4655270 4655522 -150974598 - MER89 LTR ERV1 -257 302 33 2 620 7851 44 1 0 chr4 4655588 4656535 -150973585 + L1Md_F2 LINE L1 5630 6577 -5 2 620 325 0 44 0 chr4 4656940 4656985 -150973135 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 620 1178 258 49 30 chr4 4657556 4657924 -150972196 + RMER1B Other Other 41 415 -651 2 620 2635 249 25 22 chr4 4657894 4658773 -150971347 + RMER1B Other Other 1 935 -131 2 620 424 60 0 43 chr4 4658792 4658862 -150971258 + RMER1B Other Other 998 1064 -2 2 620 304 246 120 0 chr4 4658904 4659046 -150971074 + Lx9 LINE L1 7381 7539 -105 2 620 951 287 94 45 chr4 4659052 4659488 -150970632 + RMER1A Other Other 63 588 -478 2 620 2294 110 13 51 chr4 4659504 4659877 -150970243 - RLTR9A LTR ERVK -9 359 1 2 620 2318 185 102 1 chr4 4659880 4660472 -150969648 + RMER1A Other Other 317 1065 -1 2 620 23 0 0 0 chr4 4660843 4660866 -150969254 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 247 230 34 11 chr4 4660875 4660963 -150969157 - Lx3A LINE L1 -8 6973 6884 2 620 1298 93 0 6 chr4 4661032 4661357 -150968763 + (TTTC)n Simple_repeat Simple_repeat 1 323 0 2 620 521 217 11 0 chr4 4661394 4661486 -150968634 - B1_Mur4 SINE Alu -56 94 2 2 620 334 267 0 100 chr4 4661404 4661504 -150968616 - MT2B LTR ERVL -363 238 149 2 620 29852 115 52 2 chr4 4662041 4664101 -150966019 + L1Md_F2 LINE L1 375 2521 -3362 2 620 1882 166 139 19 chr4 4664101 4664476 -150965644 + RLTR9B2 LTR ERVK 1 420 0 2 620 10312 72 7 0 chr4 4665999 4667442 -150962678 + L1Md_F2 LINE L1 4131 5583 -300 2 620 7266 78 16 17 chr4 4667445 4668442 -150961678 + L1Md_F2 LINE L1 5587 6582 0 2 620 4517 135 22 14 chr4 4668450 4669262 -150960858 + ETnERV2-int LTR ERVK 1426 2244 -5162 2 620 7682 122 52 8 chr4 4669253 4670624 -150959496 + ETnERV2-int LTR ERVK 2494 3924 -3482 2 620 351 141 36 71 chr4 4670629 4670713 -150959407 + ETnERV2-int LTR ERVK 6342 6422 -984 2 620 3181 220 21 53 chr4 4670741 4671988 -150958132 + ETnERV2-int LTR ERVK 5398 6227 -1179 2 620 2886 49 0 3 chr4 4671988 4672334 -150957786 - IAPLTR4 LTR ERVK 0 345 1 2 620 5981 244 41 32 chr4 4672334 4674849 -150955271 - IAPLTR3-int LTR ERVK -383 7297 5068 2 620 762 102 35 48 chr4 4674958 4675103 -150955017 - IAPLTR3-int LTR ERVK -2909 4672 4530 2 620 398 198 18 36 chr4 4675129 4675239 -150954881 - MMETn-int LTR ERVK -2380 2464 2357 2 620 2830 110 134 23 chr4 4675244 4675928 -150954192 - IAPLTR3-int LTR ERVK -2648 4596 3555 2 620 848 229 15 5 chr4 4675949 4676151 -150953969 + ETnERV2-int LTR ERVK 6222 6425 -981 2 620 383 84 40 40 chr4 4676362 4676436 -150953684 + ETnERV2-int LTR ERVK 7331 7404 -2 2 620 1788 182 142 19 chr4 4676437 4676811 -150953309 + RLTR9B2 LTR ERVK 1 420 0 2 620 19255 132 13 12 chr4 4676811 4680922 -150949198 + L1_Mus3 LINE L1 2516 6635 -3 2 620 264 352 49 7 chr4 4681134 4681277 -150948843 + ERVL-B4-int LTR ERVL 3469 3617 -2050 2 620 255 247 86 0 chr4 4681669 4681762 -150948358 + ERVL-B4-int LTR ERVL 4216 4316 -1445 2 620 493 318 101 30 chr4 4681917 4682245 -150947875 + ERVL-B4-int LTR ERVL 4429 4779 -935 2 620 312 316 19 0 chr4 4682359 4682481 -150947639 + MLT1A0 LTR MaLR 242 408 0 2 620 335 246 197 22 chr4 4682792 4682929 -150947191 + MLT2F LTR ERVL 3 163 -500 2 620 507 296 35 69 chr4 4683163 4683366 -150946754 - B3A SINE B2 0 198 3 2 620 443 321 36 64 chr4 4683368 4683575 -150946545 + L1M2 LINE L1 3033 3239 -2904 2 620 216 0 0 0 chr4 4683575 4683599 -150946521 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 620 443 321 36 64 chr4 4683599 4683671 -150946449 + L1M2 LINE L1 3240 3304 -2839 2 620 312 288 152 9 chr4 4683872 4683984 -150946136 + RMER12 LTR ERVK 1195 1322 0 2 620 454 306 8 8 chr4 4684301 4684423 -150945697 + ORR1D1 LTR MaLR 1 122 -252 2 620 409 155 78 58 chr4 4684424 4684527 -150945593 + ORR1D1 LTR MaLR 270 374 0 2 620 1499 200 51 0 chr4 4684620 4684915 -150945205 + MTC LTR MaLR 1 310 -111 2 620 231 195 49 0 chr4 4685166 4685207 -150944913 + ID_B1 SINE B4 175 217 -7 2 620 1103 255 89 42 chr4 4685230 4685705 -150944415 + Lx7 LINE L1 5508 6011 -1685 2 620 1223 245 168 18 chr4 4685854 4686236 -150943884 + MTE-int LTR MaLR 947 1385 -195 2 620 376 287 107 63 chr4 4686238 4686622 -150943498 - RMER10A LTR ERVL -1 441 11 2 620 1797 160 104 35 chr4 4686633 4687103 -150943017 + ORR1B1 LTR MaLR 1 386 -8 2 620 22 0 0 0 chr4 4687185 4687207 -150942913 + GC_rich Low_complexity Low_complexity 1 22 0 2 620 473 275 143 10 chr4 4687212 4687421 -150942699 + ORR1E LTR MaLR 117 353 -6 2 620 265 232 27 68 chr4 4688280 4688354 -150941766 - ID4_ SINE ID -9 74 4 2 620 240 377 122 9 chr4 4688378 4688485 -150941635 - PB1 SINE Alu -8 119 1 2 620 21 0 0 0 chr4 4690658 4690679 -150939441 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 270 0 0 0 chr4 4692076 4692106 -150938014 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 2 620 312 91 0 0 chr4 4694551 4694595 -150935525 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 620 337 188 12 12 chr4 4695435 4695521 -150934599 + GA-rich Low_complexity Low_complexity 2 87 0 2 620 375 324 80 7 chr4 4697348 4697485 -150932635 + MTD LTR MaLR 273 419 0 2 620 24 0 0 0 chr4 4697486 4697510 -150932610 + AT_rich Low_complexity Low_complexity 1 24 0 2 620 267 339 71 78 chr4 4697510 4697530 -150932590 + B4A SINE B4 81 134 -158 2 620 356 222 0 120 chr4 4697530 4697622 -150932498 + PB1D10 SINE Alu 21 101 -16 2 620 267 339 71 78 chr4 4697622 4697651 -150932469 + B4A SINE B4 135 220 -72 2 620 672 250 37 37 chr4 4698972 4699163 -150930957 - B3A SINE B2 -7 191 1 2 620 289 0 0 47 chr4 4699775 4699818 -150930302 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 620 233 340 89 36 chr4 4700656 4700824 -150929296 + RMER15 LTR ERVL 385 561 -14 2 620 858 251 194 56 chr4 4700955 4701296 -150928824 + MTD LTR MaLR 15 402 -5 2 620 408 344 73 16 chr4 4701613 4701805 -150928315 + MLT1C LTR MaLR 194 396 -71 2 620 307 256 38 13 chr4 4701955 4702034 -150928086 - ID_B1 SINE B4 -1 223 143 2 620 30 0 0 0 chr4 4702034 4702064 -150928056 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 3319 33 8 0 chr4 4702459 4702852 -150927268 - MTA_Mm LTR MaLR 0 396 1 2 620 4040 96 3 22 chr4 4703804 4704398 -150925722 + L1_Mus3 LINE L1 6055 6637 -1 2 620 816 234 19 23 chr4 4706310 4706524 -150923596 - B3 SINE B2 -2 214 2 2 620 395 289 86 68 chr4 4706647 4706810 -150923310 - MER20 DNA MER1_type -12 207 42 2 620 252 288 117 0 chr4 4706856 4706967 -150923153 + Lx8 LINE L1 6674 6797 -676 2 620 667 279 67 0 chr4 4706968 4707147 -150922973 - B3A SINE B2 -7 191 1 2 620 1077 286 62 77 chr4 4707172 4707850 -150922270 + Lx8 LINE L1 6806 7473 0 2 620 434 255 15 2 chr4 4708005 4708109 -150922011 + B4A SINE B4 1 110 -182 2 620 205 387 81 0 chr4 4709095 4709206 -150920914 - L2a LINE L2 -2 3424 3305 2 620 467 254 42 0 chr4 4709222 4709387 -150920733 - Lx6 LINE L1 -12 7448 7277 2 620 1773 225 114 34 chr4 4709389 4709719 -150920401 - RMER6C LTR ERVK 0 690 339 2 620 2804 175 158 17 chr4 4709719 4710313 -150919807 + RLTR33 LTR ERVK 1 678 0 2 620 1773 225 114 34 chr4 4710313 4710621 -150919499 - RMER6C LTR ERVK -352 338 1 2 620 1314 227 189 13 chr4 4710623 4711015 -150919105 - Lx6 LINE L1 -185 7275 6815 2 620 197 98 24 0 chr4 4711450 4711491 -150918629 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 620 263 122 0 20 chr4 4712039 4712089 -150918031 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 620 454 305 79 32 chr4 4712328 4712691 -150917429 + MLT2B1 LTR ERVL 10 495 -59 2 620 1460 113 30 0 chr4 4712693 4712923 -150917197 - L1Md_F LINE L1 -5952 567 331 2 620 1389 24 6 0 chr4 4712923 4713093 -150917027 + L1Md_F2 LINE L1 5416 5586 -297 2 620 7491 79 0 7 chr4 4713093 4714096 -150916024 + L1Md_F2 LINE L1 5587 6582 0 2 620 6595 95 28 23 chr4 4714249 4715385 -150914735 - Lx LINE L1 -15 6639 5496 2 620 2199 148 0 5 chr4 4715373 4715761 -150914359 + Lx LINE L1 5101 5486 -397 2 620 266 329 0 0 chr4 4715989 4716068 -150914052 + ID4_ SINE ID 3 81 -2 2 620 492 274 30 38 chr4 4716095 4716228 -150913892 + B3A SINE B2 57 188 -10 2 620 3353 81 59 22 chr4 4716254 4716796 -150913324 + Lx3_Mus LINE L1 5698 6259 -750 2 620 267 351 65 13 chr4 4717279 4717432 -150912688 - MER20 DNA MER1_type 0 219 59 2 620 207 182 0 0 chr4 4717552 4717596 -150912524 + G-rich Low_complexity Low_complexity 3 46 0 2 620 279 0 0 0 chr4 4718151 4718182 -150911938 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 621 257 274 33 124 chr4 4719055 4719176 -150910944 + PB1 SINE Alu 1 110 -17 2 621 571 200 256 0 chr4 4720872 4721052 -150909068 + URR1A DNA MER1_type 1 226 0 3 621 537 283 20 14 chr4 4721442 4721589 -150908531 + B1F SINE Alu 1 148 -1 3 621 211 50 75 0 chr4 4722103 4722143 -150907977 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 621 2278 200 136 22 chr4 4722323 4722896 -150907224 - MTC-int LTR MaLR -583 997 3 3 621 1564 161 8 34 chr4 4722897 4723160 -150906960 - MTC LTR MaLR -1 420 165 3 621 1306 201 59 35 chr4 4723168 4723456 -150906664 + MTC LTR MaLR 127 421 0 3 621 329 250 35 9 chr4 4723501 4723614 -150906506 + L1ME1 LINE L1 6039 6154 -25 3 621 21 36 0 0 chr4 4723620 4723648 -150906472 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 2346 182 7 19 chr4 4723686 4724100 -150906020 + RLTR17 LTR ERVK 284 692 0 3 621 1587 164 11 15 chr4 4724201 4724474 -150905646 - RLTR17 LTR ERVK -411 281 10 3 621 3387 192 56 68 chr4 4724891 4725657 -150904463 + RMER21B LTR ERV1 1 757 -85 3 621 234 0 0 0 chr4 4725912 4725938 -150904182 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 621 494 290 8 0 chr4 4725975 4726106 -150904014 + B1F1 SINE Alu 1 132 -17 3 621 522 199 0 0 chr4 4726110 4726283 -150903837 + GA-rich Low_complexity Low_complexity 1 173 0 3 621 775 289 92 23 chr4 4726483 4726745 -150903375 + MTD LTR MaLR 51 330 -89 3 621 3034 185 93 100 chr4 4726851 4727108 -150903012 + RLTR40 LTR ERVK 1 273 -544 3 621 1918 195 27 19 chr4 4727108 4727479 -150902641 + ORR1D1 LTR MaLR 1 374 0 3 621 3034 185 93 100 chr4 4727479 4728031 -150902089 + RLTR40 LTR ERVK 274 803 -14 3 621 216 184 0 0 chr4 4728183 4728232 -150901888 + GA-rich Low_complexity Low_complexity 3 51 0 3 621 290 225 35 59 chr4 4728465 4728550 -150901570 + MTD LTR MaLR 335 417 -2 3 621 1624 243 249 49 chr4 4728553 4729522 -150900598 + MTD-int LTR MaLR 1 1254 -4 3 621 192 113 36 36 chr4 4729543 4729598 -150900522 + (TATG)n Simple_repeat Simple_repeat 4 58 0 3 621 824 304 98 23 chr4 4730172 4730519 -150899601 + RMER20B LTR ERVK 234 606 -21 3 621 369 93 0 0 chr4 4730652 4730706 -150899414 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 621 454 278 88 29 chr4 4730709 4730846 -150899274 - RSINE1 SINE B4 -18 147 3 3 621 225 228 35 0 chr4 4731139 4731196 -150898924 + MIRb SINE MIR 173 231 -37 3 621 255 203 0 0 chr4 4731877 4731941 -150898179 + GA-rich Low_complexity Low_complexity 2 65 0 3 621 251 356 13 7 chr4 4731973 4732123 -150897997 + (CATA)n Simple_repeat Simple_repeat 2 152 0 3 621 305 253 30 50 chr4 4732982 4733082 -150897038 + MLT1J1 LTR MaLR 71 168 -276 3 621 1079 231 15 15 chr4 4733221 4733480 -150896640 - RLTR22_Mur LTR ERVK 0 1848 1590 3 621 2508 99 6 13 chr4 4733564 4734004 -150896116 + Lx3A LINE L1 6561 7009 0 3 621 385 172 22 134 chr4 4734078 4734212 -150895908 - RLTR22_Mur LTR ERVK -844 1004 886 3 621 3250 182 48 50 chr4 4734259 4734847 -150895273 - RLTR22_Mur LTR ERVK -1099 749 172 3 621 303 28 0 0 chr4 4734847 4734883 -150895237 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 621 3250 182 48 50 chr4 4734883 4735040 -150895080 - RLTR22_Mur LTR ERVK -1677 171 7 3 621 189 283 84 32 chr4 4737289 4737384 -150892736 - L3 LINE CR1 -30 4459 4360 3 621 378 0 0 0 chr4 4737775 4737817 -150892303 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 621 3971 268 87 29 chr4 4738106 4738633 -150891487 - L1_Mur3 LINE L1 -135 5745 5215 3 621 1312 237 79 10 chr4 4738633 4739025 -150891095 + MTD LTR MaLR 1 419 0 3 621 3971 268 87 29 chr4 4739025 4740325 -150889795 - L1_Mur3 LINE L1 -666 5214 3812 3 621 540 257 112 40 chr4 4740325 4740624 -150889496 + Lx8 LINE L1 5807 6129 -1344 3 621 5604 33 4 6 chr4 4740624 4741304 -150888816 + L1Md_F3 LINE L1 5906 6584 0 3 621 540 276 138 49 chr4 4741304 4741518 -150888602 + Lx8 LINE L1 6130 6366 -1107 3 621 1123 282 59 7 chr4 4741636 4741925 -150888195 + MTEa LTR MaLR 76 379 0 3 621 3438 30 2 0 chr4 4742097 4742492 -150887628 + MTA_Mm LTR MaLR 1 396 0 3 621 300 143 0 0 chr4 4742900 4742956 -150887164 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 621 662 294 68 93 chr4 4742988 4743355 -150886765 + RLTR9A LTR ERVK 1 358 -10 3 621 312 226 132 39 chr4 4743700 4743829 -150886291 - MLT1A1 LTR MaLR 0 408 268 3 621 269 343 19 9 chr4 4743974 4744080 -150886040 - MLT1A1 LTR MaLR -238 127 21 3 621 233 275 29 0 chr4 4744374 4744443 -150885677 + (TATG)n Simple_repeat Simple_repeat 4 74 0 3 621 490 307 22 14 chr4 4744510 4744649 -150885471 - B4 SINE B4 -72 220 81 3 621 186 150 0 0 chr4 4744781 4744821 -150885299 + (CTAA)n Simple_repeat Simple_repeat 1 40 0 3 621 29 28 0 0 chr4 4744958 4744994 -150885126 + AT_rich Low_complexity Low_complexity 1 36 0 3 621 1954 125 76 0 chr4 4745385 4745688 -150884432 - ORR1A3 LTR MaLR 0 326 1 3 621 2440 52 88 0 chr4 4746264 4746569 -150883551 + IAPEY3_LTR LTR ERVK 1 332 0 3 621 1344 259 8 24 chr4 4746701 4747081 -150883039 - Lx7 LINE L1 -314 7382 7009 3 621 1985 251 53 26 chr4 4747083 4747653 -150882467 + Lx7 LINE L1 6400 6984 -712 3 621 189 0 0 0 chr4 4747668 4747689 -150882431 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 621 355 233 41 0 chr4 4747714 4747787 -150882333 - B4 SINE B4 -206 86 11 3 621 7160 87 24 13 chr4 4747814 4748978 -150881142 + L1_Mus3 LINE L1 5497 6638 0 3 621 252 340 130 0 chr4 4748982 4749082 -150881038 - PB1 SINE Alu -12 115 3 3 621 631 332 121 27 chr4 4749130 4749535 -150880585 + LTR40a LTR ERVL 76 518 -1 3 621 234 0 0 0 chr4 4749816 4749842 -150880278 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 621 478 228 33 0 chr4 4750405 4750497 -150879623 - PB1D10 SINE Alu -9 108 14 3 621 974 154 8 0 chr4 4751134 4751394 -150878726 + CT-rich Low_complexity Low_complexity 1 262 0 3 621 288 266 0 31 chr4 4751539 4751636 -150878484 + L1MD LINE L1 5624 5717 -525 3 621 7635 36 2 2 chr4 4751637 4753085 -150877035 - L1Md_F2 LINE L1 -2 6580 5134 3 621 249 275 187 23 chr4 4753076 4753247 -150876873 + L1MD LINE L1 5702 5900 -459 3 621 2137 213 15 7 chr4 4753252 4753658 -150876462 + MTC LTR MaLR 5 413 -8 3 621 258 269 89 13 chr4 4754165 4754244 -150875876 + BC1_Mm scRNA scRNA 17 101 -51 3 621 421 307 87 66 chr4 4754618 4754859 -150875261 - MIRb SINE MIR -16 252 7 3 621 876 230 45 5 chr4 4754937 4755138 -150874982 - B3 SINE B2 -3 213 5 3 621 22 35 0 0 chr4 4755313 4755342 -150874778 + AT_rich Low_complexity Low_complexity 1 29 0 3 621 320 299 138 85 chr4 4755559 4755720 -150874400 - RMER10A LTR ERVL -28 414 219 3 621 261 0 0 0 chr4 4755720 4755749 -150874371 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 621 450 0 0 0 chr4 4755749 4755798 -150874322 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 621 320 299 138 85 chr4 4755798 4756012 -150874108 - RMER10A LTR ERVL -224 218 19 3 621 249 108 0 0 chr4 4756610 4756647 -150873473 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3 621 292 290 89 10 chr4 4756649 4756750 -150873370 - PB1 SINE Alu -7 120 12 3 621 210 188 42 0 chr4 4756787 4756835 -150873285 + CT-rich Low_complexity Low_complexity 2 51 0 3 621 244 226 75 0 chr4 4756835 4756888 -150873232 - tRNA-Ala-GCA tRNA tRNA -10 65 9 3 621 225 358 60 0 chr4 4756888 4756902 -150873218 - ID4 SINE ID -12 71 1 3 621 26 50 0 0 chr4 4756917 4756957 -150873163 + AT_rich Low_complexity Low_complexity 1 40 0 3 621 661 315 68 3 chr4 4757007 4757300 -150872820 - Lx8 LINE L1 -901 6572 6261 3 621 258 259 17 0 chr4 4757317 4757375 -150872745 + Lx7 LINE L1 5589 5647 -2049 3 621 515 203 8 0 chr4 4758220 4758338 -150871782 + Lx7 LINE L1 5646 5768 -109 3 621 530 316 43 24 chr4 4758459 4758832 -150871288 + Lx7 LINE L1 5794 6173 -1523 3 621 537 83 0 0 chr4 4758833 4758917 -150871203 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 621 260 344 16 0 chr4 4759129 4759193 -150870927 - ID4 SINE ID -10 73 9 3 621 21 0 0 0 chr4 4760498 4760519 -150869601 + AT_rich Low_complexity Low_complexity 1 21 0 3 621 282 29 0 0 chr4 4761511 4761546 -150868574 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 621 513 329 136 35 chr4 4761591 4761639 -150868481 - B4A SINE B4 -7 285 240 3 621 1156 209 160 28 chr4 4761639 4761964 -150868156 - ORR1D1 LTR MaLR -2 372 5 3 621 513 329 136 35 chr4 4761964 4762173 -150867947 - B4A SINE B4 -53 239 2 3 621 7060 77 14 3 chr4 4762586 4764155 -150865965 - L1_Mus1 LINE L1 0 6567 4979 3 621 242 323 106 15 chr4 4765025 4765157 -150864963 - Charlie5 DNA MER1_type -2366 258 115 3 621 751 319 147 15 chr4 4765219 4765811 -150864309 + Charlie5 DNA MER1_type 1746 2415 -209 3 621 293 269 58 0 chr4 4765840 4765944 -150864176 + Charlie5 DNA MER1_type 2510 2619 -5 3 621 314 265 182 7 chr4 4766634 4766771 -150863349 - RSINE1 SINE B4 -2 163 3 3 621 25 65 0 0 chr4 4766775 4766821 -150863299 + AT_rich Low_complexity Low_complexity 1 46 0 3 621 492 81 0 0 chr4 4768121 4768195 -150861925 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 3 621 240 300 17 0 chr4 4768450 4768510 -150861610 + B1F1 SINE Alu 3 63 -86 3 621 771 274 94 12 chr4 4768637 4768892 -150861228 + RMER5 LTR ERV1 33 308 -226 3 621 637 231 28 14 chr4 4770761 4770906 -150859214 + B1_Mur3 SINE Alu 3 149 0 3 621 338 208 0 0 chr4 4771152 4771205 -150858915 + PB1D10 SINE Alu 14 66 -51 3 621 195 98 38 38 chr4 4771863 4771916 -150858204 + A-rich Low_complexity Low_complexity 5 57 0 3 621 739 289 109 20 chr4 4771939 4772186 -150857934 + B4 SINE B4 3 271 -21 3 621 822 238 66 6 chr4 4772187 4772369 -150857751 + MTD LTR MaLR 17 209 -210 3 621 7440 188 54 29 chr4 4772931 4775034 -150855086 + L1_Mur3 LINE L1 889 3033 -2847 3 621 201 147 0 0 chr4 4775451 4775485 -150854635 + (TTA)n Simple_repeat Simple_repeat 2 35 0 3 621 402 220 40 10 chr4 4775532 4775633 -150854487 - ORR1D1 LTR MaLR -46 328 225 3 621 186 43 0 0 chr4 4775722 4775745 -150854375 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3 621 303 243 7 184 chr4 4775852 4775988 -150854132 - B1_Mur2 SINE Alu -5 144 33 3 621 304 286 35 18 chr4 4775985 4776099 -150854021 - B1F1 SINE Alu -33 116 1 3 621 236 328 35 0 chr4 4776310 4776426 -150853694 + L1M5 LINE L1 3765 3884 -2262 3 621 2137 160 14 60 chr4 4776472 4776885 -150853235 + ORR1B1 LTR MaLR 1 394 0 3 621 1146 243 29 12 chr4 4776899 4777351 -150852769 + RMER10B LTR ERVL 3 392 -6 3 621 215 268 0 0 chr4 4777387 4777428 -150852692 + B1F SINE Alu 9 49 -100 3 621 2641 35 31 0 chr4 4777594 4777911 -150852209 + IAPLTR2b LTR ERVK 1 327 0 4 621 603 239 170 11 chr4 4778656 4778838 -150851282 - B3 SINE B2 -4 212 2 4 621 216 0 0 0 chr4 4779105 4779129 -150850991 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 4 621 663 180 70 0 chr4 4779131 4779259 -150850861 - B1_Mur3 SINE Alu -8 141 5 4 621 1822 192 23 17 chr4 4780387 4780731 -150849389 + ORR1B1 LTR MaLR 41 386 -8 4 621 1601 231 49 49 chr4 4780734 4781143 -150848977 + RMER10A LTR ERVL 32 440 -2 4 621 246 337 29 67 chr4 4781342 4781447 -150848673 - PB1D10 SINE Alu -7 110 10 4 621 897 280 28 0 chr4 4781853 4782064 -150848056 + ID_B1 SINE B4 5 221 -3 4 621 5915 53 17 1 chr4 4782459 4783225 -150846895 + RLTR13C2 LTR ERVK 35 808 0 4 621 180 307 27 0 chr4 4783732 4783807 -150846313 + L2 LINE L2 1378 1454 -1965 4 621 285 348 44 19 chr4 4784075 4784233 -150845887 - RMER15 LTR ERVL -67 508 347 4 621 348 200 0 0 chr4 4785382 4785457 -150844663 + (TATG)n Simple_repeat Simple_repeat 4 78 0 4 621 478 325 158 22 chr4 4785490 4785718 -150844402 - B4A SINE B4 0 292 34 4 621 659 31 41 0 chr4 4786229 4786327 -150843793 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 621 1876 139 39 60 chr4 4786541 4786877 -150843243 - ORR1A4 LTR MaLR 0 329 1 4 621 1372 269 36 28 chr4 4787351 4787760 -150842360 + MTE2b LTR MaLR 5 405 -14 4 621 23 54 0 0 chr4 4788193 4788230 -150841890 + AT_rich Low_complexity Low_complexity 1 37 0 4 621 508 259 35 0 chr4 4788959 4789075 -150841045 - ID_B1 SINE B4 -2 222 103 4 621 486 88 0 0 chr4 4789075 4789143 -150840977 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 4 621 358 311 39 0 chr4 4789340 4789443 -150840677 + PB1D7 SINE Alu 5 111 -9 4 621 347 21 0 41 chr4 4789443 4789492 -150840628 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 621 1507 84 70 25 chr4 4789666 4789910 -150840210 + L1_Mus3 LINE L1 6378 6632 -6 4 621 27813 126 14 12 chr4 4789992 4796283 -150833837 + L1_Mus2 LINE L1 245 6566 0 4 621 241 293 55 91 chr4 4796862 4797027 -150833093 - MIRb SINE MIR -40 228 70 4 621 5332 31 17 0 chr4 4797399 4798033 -150832087 + L1Md_F3 LINE L1 5925 6569 -15 4 621 741 229 0 0 chr4 4798707 4798847 -150831273 - B1_Mus2 SINE Alu -6 141 2 4 621 288 218 0 0 chr4 4799743 4799798 -150830322 - RLTR14 LTR ERV1 0 382 328 4 621 760 305 117 18 chr4 4800054 4800438 -150829682 - RMER5 LTR ERV1 -1 533 112 4 621 1678 173 39 37 chr4 4800953 4801362 -150828758 - RMER17C LTR ERVK 0 410 1 4 621 180 430 74 0 chr4 4802347 4802468 -150827652 + MER5B DNA MER1_type 46 175 -3 4 621 959 110 7 20 chr4 4802848 4802861 -150827259 - B1_Mm SINE Alu 0 147 135 4 621 243 0 0 0 chr4 4802861 4802888 -150827232 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 4 621 959 110 7 20 chr4 4802888 4803023 -150827097 - B1_Mm SINE Alu -13 134 1 4 621 634 302 128 82 chr4 4803157 4803655 -150826465 - MER74B LTR ERVL -30 592 72 4 621 554 304 6 30 chr4 4803943 4804109 -150826011 + B4A SINE B4 1 162 -130 4 621 3141 49 3 0 chr4 4804135 4804523 -150825597 - MTA_Mm LTR MaLR -7 389 1 4 621 351 0 0 0 chr4 4804613 4804652 -150825468 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 621 231 333 0 0 chr4 4805642 4805702 -150824418 + MER2 DNA MER2_type 7 66 -279 4 621 592 335 7 13 chr4 4805721 4805872 -150824248 + B4A SINE B4 6 155 -137 4 621 480 18 0 0 chr4 4805908 4805965 -150824155 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 621 356 265 67 25 chr4 4805966 4806086 -150824034 + MER2 DNA MER2_type 88 212 -133 4 621 1197 61 0 0 chr4 4806089 4806236 -150823884 + B1_Mm SINE Alu 1 147 0 4 621 2226 125 24 35 chr4 4806504 4806876 -150823244 - RLTR9A LTR ERVK 0 368 1 4 621 22 0 0 0 chr4 4806884 4806906 -150823214 + AT_rich Low_complexity Low_complexity 1 22 0 4 621 253 308 9 28 chr4 4807158 4807265 -150822855 - ETnERV2-int LTR ERVK -988 6418 6314 4 621 3723 118 51 33 chr4 4807517 4808218 -150821902 - RMER16-int LTR ERVK -1230 4176 3463 4 621 2376 88 49 14 chr4 4808218 4808588 -150821532 - BGLII LTR ERVK 0 421 39 4 621 450 79 10 102 chr4 4808589 4808786 -150821334 + T-rich Low_complexity Low_complexity 1 179 0 4 621 181 16 0 129 chr4 4808786 4808856 -150821264 + (TTTTTG)n Simple_repeat Simple_repeat 1 61 0 4 621 1075 109 0 0 chr4 4808858 4809005 -150821115 - B1_Mus1 SINE Alu 0 148 2 4 621 339 115 0 0 chr4 4809005 4809057 -150821063 - BGLII LTR ERVK -369 52 1 4 621 2481 111 31 24 chr4 4809057 4809198 -150820922 - RMER16-int LTR ERVK -1878 3528 3395 4 621 3620 122 64 22 chr4 4809198 4809776 -150820344 + RLTR1D LTR ERV1 4 605 0 4 621 2481 111 31 24 chr4 4809776 4810059 -150820061 - RMER16-int LTR ERVK -2012 3394 3101 4 621 1189 253 0 117 chr4 4810059 4810488 -150819632 + L1VL1 LINE L1 1 379 -6043 4 621 889 130 6 0 chr4 4810498 4810660 -150819460 + MusHAL1 LINE L1 1 163 -2549 4 621 2204 92 54 17 chr4 4810660 4811014 -150819106 - IAPLTR1_Mm LTR ERVK 0 367 1 4 621 52747 29 6 4 chr4 4811016 4817478 -150812642 - IAPEz-int LTR ERVK -2 6479 8 4 621 2204 92 54 17 chr4 4817478 4817832 -150812288 - IAPLTR1_Mm LTR ERVK 0 367 1 4 621 25048 142 13 5 chr4 4817832 4822318 -150807802 + L1_Mm LINE L1 1360 5881 -2 4 621 2066 221 59 30 chr4 4822345 4822966 -150807154 + RMER16-int LTR ERVK 3594 4176 -1230 4 621 390 210 40 35 chr4 4822944 4823134 -150806986 + ETnERV2-int LTR ERVK 6127 6227 -1179 4 621 38696 16 0 6 chr4 4823154 4829344 -150800776 - L1Md_A LINE L1 0 6582 436 4 621 851 204 12 0 chr4 4829344 4829511 -150800609 + ETnERV2-int LTR ERVK 6255 6423 -983 4 621 380 84 40 40 chr4 4829723 4829797 -150800323 + ETnERV2-int LTR ERVK 7331 7404 -2 4 621 2402 126 72 8 chr4 4829798 4830175 -150799945 + RLTR9D LTR ERVK 1 401 -2 4 621 274 74 0 36 chr4 4830305 4830361 -150799759 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 621 4542 148 66 33 chr4 4830589 4831590 -150798530 - ETnERV2-int LTR ERVK -5215 2191 1158 4 621 180 83 0 0 chr4 4831629 4831653 -150798467 - L3 LINE CR1 -3713 776 753 4 621 600 14 0 0 chr4 4831686 4831755 -150798365 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 621 204 83 41 20 chr4 4831773 4831822 -150798298 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 4 621 463 326 41 68 chr4 4832052 4832123 -150797997 - RLTR11B LTR ERVK -84 357 280 4 621 2106 142 28 14 chr4 4832123 4832486 -150797634 - RLTR9A LTR ERVK 0 368 1 4 621 751 275 67 48 chr4 4832486 4832779 -150797341 - RLTR11B LTR ERVK -155 298 3 4 621 236 250 163 75 chr4 4833948 4834095 -150796025 + MIRb SINE MIR 60 219 -49 4 621 291 332 108 77 chr4 4834363 4834459 -150795661 - MLT1E1 LTR MaLR -24 630 521 4 621 4569 54 28 2 chr4 4834459 4835031 -150795089 + LTRIS_Mus LTR ERV1 1 587 0 4 621 291 332 108 77 chr4 4835031 4835257 -150794863 - MLT1E1 LTR MaLR -134 520 298 4 621 29 60 0 0 chr4 4835523 4835573 -150794547 + AT_rich Low_complexity Low_complexity 1 50 0 4 621 1151 116 17 8 chr4 4835831 4836002 -150794118 + ORR1A2 LTR MaLR 1 200 -178 4 621 1423 151 50 14 chr4 4836002 4836293 -150793827 + LTRIS2 LTR ERV1 1 283 -229 4 621 1370 66 78 17 chr4 4836293 4836506 -150793614 + RLTR10C LTR ERVK 1 222 -143 4 621 781 138 0 0 chr4 4836510 4836633 -150793487 + MMERVK10C-int LTR ERVK 221 343 -7238 4 621 682 200 11 6 chr4 4836631 4836812 -150793308 + MMERVK10C-int LTR ERVK 729 910 -6671 4 621 395 148 34 0 chr4 4836815 4836903 -150793217 + MMERVK10C-int LTR ERVK 857 947 -6634 4 621 634 199 316 51 chr4 4836992 4837362 -150792758 + MMERVK10C-int LTR ERVK 312 668 -5469 4 621 340 212 125 0 chr4 4837365 4837445 -150792675 + MMERVK10C-int LTR ERVK 938 1027 -5110 4 621 369 79 0 0 chr4 4837437 4837500 -150792620 + MMERVK10C-int LTR ERVK 1885 1947 -5634 4 621 518 68 0 0 chr4 4837506 4837579 -150792541 + MMERVK10C-int LTR ERVK 2552 2624 -4957 4 621 37805 41 1 14 chr4 4837577 4842388 -150787732 + MMERVK10C-int LTR ERVK 2832 7581 0 4 621 3403 57 28 5 chr4 4842388 4842814 -150787306 + RLTR10C LTR ERVK 1 436 0 4 621 1764 64 4 4 chr4 4842814 4843049 -150787071 + LTRIS2 LTR ERV1 330 564 0 4 621 1177 108 6 6 chr4 4843049 4843225 -150786895 + ORR1A1 LTR MaLR 150 325 -2 4 621 279 270 89 10 chr4 4843477 4843578 -150786542 + MLT1B LTR MaLR 230 338 -52 4 621 3756 71 4 15 chr4 4844234 4844761 -150785359 + ORR1A1-int LTR MaLR 1272 1792 0 4 621 2626 61 0 52 chr4 4844761 4845124 -150784996 + ORR1A1 LTR MaLR 1 344 -2 4 621 1143 88 0 0 chr4 4845124 4845271 -150784849 + B1_Mm SINE Alu 1 147 0 4 621 219 207 153 35 chr4 4845401 4845486 -150784634 + MIR3 SINE MIR 92 186 -22 4 621 283 221 29 29 chr4 4845717 4845787 -150784333 + MTD LTR MaLR 181 250 -169 4 621 574 206 19 9 chr4 4845789 4845800 -150784320 - B1_Mur2 SINE Alu -2 147 137 4 621 351 0 0 0 chr4 4845800 4845839 -150784281 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 4 621 574 206 19 9 chr4 4845839 4845935 -150784185 - B1_Mur2 SINE Alu -13 136 39 4 621 504 252 174 0 chr4 4845945 4846100 -150784020 + MTD LTR MaLR 238 419 0 4 621 180 121 29 57 chr4 4846701 4846736 -150783384 + L4 LINE RTE 372 405 -1624 4 621 321 225 23 91 chr4 4847026 4847114 -150783006 + RSINE1 SINE B4 1 82 -83 4 621 203 0 37 0 chr4 4847143 4847170 -150782950 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 4 621 459 0 0 0 chr4 4847700 4847751 -150782369 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 621 216 200 0 0 chr4 4847831 4847876 -150782244 + T-rich Low_complexity Low_complexity 1 45 0 4 621 238 387 73 0 chr4 4847948 4848098 -150782022 + MER117 DNA MER1_type 32 192 -5 4 621 338 147 15 0 chr4 4848199 4848267 -150781853 + CT-rich Low_complexity Low_complexity 2 70 0 4 621 310 178 22 0 chr4 4848266 4848356 -150781764 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 621 687 259 35 129 chr4 4848369 4848679 -150781441 - B4 SINE B4 -9 283 3 4 621 428 291 170 0 chr4 4848693 4848899 -150781221 + MER2 DNA MER2_type 88 328 -17 4 621 566 261 29 15 chr4 4849216 4849352 -150780768 - B1F SINE Alu 0 149 12 4 621 1134 204 77 74 chr4 4849357 4849654 -150780466 + RLTR26 LTR ERVK 1 298 -344 4 77 280 155 35 0 chr4 4849640 4849698 -150780422 + RLTR26 LTR ERVK 583 642 0 4 622 476 310 74 24 chr4 4849714 4850011 -150780109 - L1M4 LINE L1 -509 5665 5354 4 622 1038 306 122 12 chr4 4850394 4851327 -150778793 - L1M4 LINE L1 -1001 5139 4088 4 622 266 310 58 75 chr4 4851349 4851537 -150778583 + ORR1E LTR MaLR 13 197 -162 4 622 432 0 0 0 chr4 4851659 4851707 -150778413 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 622 21 0 0 0 chr4 4851961 4851982 -150778138 + AT_rich Low_complexity Low_complexity 1 21 0 4 622 1437 157 5 0 chr4 4851988 4852211 -150777909 + URR1B DNA MER1_type 1 224 -1 4 622 231 339 102 0 chr4 4852301 4852419 -150777701 - B1F SINE Alu -17 132 3 4 622 284 293 96 62 chr4 4852714 4852954 -150777166 - L1M4 LINE L1 -2366 3780 3533 4 622 708 152 76 0 chr4 4853006 4853124 -150776996 - B1_Mus2 SINE Alu 0 147 21 4 622 242 250 294 0 chr4 4853183 4853275 -150776845 - RSINE1 SINE B4 -42 123 5 4 622 2838 106 149 67 chr4 4853328 4853852 -150776268 + RMER2 LTR ERV1 1 567 0 5 622 963 246 99 35 chr4 4853900 4854182 -150775938 + MT2A LTR ERVL 1 300 -233 5 622 5780 196 50 49 chr4 4854185 4856191 -150773929 + Lx7 LINE L1 4494 6499 -1197 5 622 1245 198 52 12 chr4 4856202 4856523 -150773597 + BGLII_B LTR ERVK 120 467 -60 5 622 1322 215 26 0 chr4 4856523 4856793 -150773327 + Lx7 LINE L1 6492 6768 -928 5 622 1196 61 0 0 chr4 4856795 4856942 -150773178 + B1_Mm SINE Alu 1 147 0 5 622 858 218 68 15 chr4 4856974 4857179 -150772941 + Lx7 LINE L1 6840 7055 -641 5 622 360 64 0 0 chr4 4857179 4857226 -150772894 + (GGA)n Simple_repeat Simple_repeat 3 49 0 5 622 435 19 0 0 chr4 4858212 4858264 -150771856 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 622 309 26 0 0 chr4 4858264 4858301 -150771819 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 622 185 0 40 0 chr4 4858319 4858344 -150771776 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 622 2296 223 30 66 chr4 4858359 4859152 -150770968 - L1_Mur3 LINE L1 -2782 3098 2334 5 622 687 215 156 128 chr4 4859787 4860069 -150770051 + B4A SINE B4 3 292 0 5 622 363 89 0 0 chr4 4860069 4860125 -150769995 + (CCA)n Simple_repeat Simple_repeat 1 56 0 5 622 965 230 0 88 chr4 4860253 4860491 -150769629 + MTC LTR MaLR 1 217 -204 5 622 34207 49 1 16 chr4 4860492 4865685 -150764435 + L1Md_A LINE L1 476 5586 -297 5 622 8413 27 3 0 chr4 4865685 4866678 -150763442 + L1Md_A LINE L1 5587 6582 0 5 622 812 174 27 43 chr4 4866678 4866864 -150763256 - RMER17C-int LTR ERVK -623 2615 2433 5 622 1387 74 5 31 chr4 4866868 4867063 -150763057 + B2_Mm1t SINE B2 2 191 -2 5 622 861 212 127 0 chr4 4867063 4867252 -150762868 + MTC LTR MaLR 209 421 0 5 622 4141 200 71 123 chr4 4867255 4867412 -150762708 + MTC-int LTR MaLR 6 164 -1094 5 622 1184 41 7 0 chr4 4867412 4867559 -150762561 + B1_Mus1 SINE Alu 1 148 0 5 622 4141 200 71 123 chr4 4867559 4868582 -150761538 + MTC-int LTR MaLR 165 1111 -147 5 622 555 16 0 0 chr4 4868582 4868646 -150761474 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 5 622 4141 200 71 123 chr4 4868646 4868784 -150761336 + MTC-int LTR MaLR 1112 1256 -2 5 622 2151 183 19 19 chr4 4868786 4869199 -150760921 + MTC LTR MaLR 1 413 -8 5 622 196 372 80 0 chr4 4869777 4869890 -150760230 - MIRm SINE MIR 0 276 155 5 622 267 301 0 14 chr4 4869916 4869990 -150760130 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 5 622 277 309 0 0 chr4 4869924 4869992 -150760128 + ID4 SINE ID 16 83 0 5 622 898 132 6 6 chr4 4870019 4870179 -150759941 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 5 622 1524 155 17 171 chr4 4870790 4871271 -150758849 - RMER17C LTR ERVK -3 407 1 5 622 203 237 13 26 chr4 4872317 4872395 -150757725 + A-rich Low_complexity Low_complexity 1 77 0 5 622 375 331 32 0 chr4 4872793 4872917 -150757203 - RMER20B LTR ERVK -499 128 1 5 622 1519 303 46 42 chr4 4873436 4873600 -150756520 - Lx9 LINE L1 -180 7464 7303 5 622 2010 160 67 6 chr4 4873600 4873946 -150756174 + ORR1B2 LTR MaLR 1 367 0 5 622 1519 303 46 42 chr4 4873946 4874504 -150755616 - Lx9 LINE L1 -342 7302 6739 5 622 197 218 69 52 chr4 4874871 4874929 -150755191 + MIR3 SINE MIR 96 154 -54 5 622 22 35 0 0 chr4 4875806 4875835 -150754285 + AT_rich Low_complexity Low_complexity 1 29 0 5 622 468 0 0 0 chr4 4876607 4876659 -150753461 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 622 33 73 0 0 chr4 4876887 4876955 -150753165 + AT_rich Low_complexity Low_complexity 1 68 0 5 622 350 327 28 0 chr4 4877411 4877518 -150752602 - ID_B1 SINE B4 -38 186 77 5 622 1305 102 11 0 chr4 4877528 4877714 -150752406 - B2_Mm1a SINE B2 -4 189 2 5 622 21 0 0 0 chr4 4877890 4877911 -150752209 + AT_rich Low_complexity Low_complexity 1 21 0 5 622 321 230 66 26 chr4 4878228 4878304 -150751816 + B1F1 SINE Alu 6 84 -65 5 622 353 350 42 33 chr4 4878347 4878560 -150751560 - L1MEf LINE L1 -5433 767 553 5 622 347 312 26 26 chr4 4878603 4878718 -150751402 + L1MC4a LINE L1 6861 6975 -1020 5 622 222 37 0 0 chr4 4878833 4878860 -150751260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 622 1410 246 141 16 chr4 4878897 4879343 -150750777 + RLTR19C LTR ERVK 1 502 -4 5 622 440 281 112 41 chr4 4879616 4879983 -150750137 + L1MC4a LINE L1 7479 7871 -11 5 622 2171 171 168 57 chr4 4881122 4881167 -150748953 - MT2B LTR ERVL 0 601 562 5 622 558 0 0 0 chr4 4881167 4881229 -150748891 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 622 2171 171 168 57 chr4 4881229 4881724 -150748396 - MT2B LTR ERVL -40 561 1 5 622 690 180 0 0 chr4 4881789 4881928 -150748192 + CT-rich Low_complexity Low_complexity 2 140 0 5 622 242 257 56 14 chr4 4881945 4882016 -150748104 - B1_Mus1 SINE Alu -55 93 20 5 622 234 0 0 0 chr4 4882122 4882148 -150747972 + (T)n Simple_repeat Simple_repeat 1 26 0 5 622 1157 222 13 187 chr4 4882821 4883286 -150746834 - ORR1C2 LTR MaLR 0 384 1 5 622 737 266 43 43 chr4 4883359 4883567 -150746553 + MTE2a LTR MaLR 172 379 0 5 622 1289 195 207 7 chr4 4884228 4884532 -150745588 - ORR1B2 LTR MaLR 0 367 3 5 622 394 299 22 7 chr4 4885081 4885216 -150744904 - LTR16A LTR ERVL -5 446 310 5 622 203 162 0 0 chr4 4885416 4885453 -150744667 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 622 467 269 124 59 chr4 4886419 4886605 -150743515 + B3A SINE B2 1 198 0 5 622 270 0 0 0 chr4 4886610 4886640 -150743480 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 622 349 277 62 34 chr4 4887861 4888070 -150742050 + L1M2 LINE L1 5551 5765 -532 5 622 3275 38 5 2 chr4 4888072 4888467 -150741653 - MTA_Mm LTR MaLR 0 396 1 5 622 7263 88 36 3 chr4 4888467 4889521 -150740599 - MTA_Mm-int LTR MaLR 0 1098 10 5 622 2595 60 0 0 chr4 4889509 4889842 -150740278 - MTA_Mm LTR MaLR -13 333 1 5 622 411 56 0 0 chr4 4889968 4890022 -150740098 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 622 291 292 32 24 chr4 4890350 4890473 -150739647 - Tigger13a DNA MER2_type -475 296 173 5 622 202 224 0 0 chr4 4890855 4890904 -150739216 + T-rich Low_complexity Low_complexity 1 49 0 5 622 38 68 0 0 chr4 4891185 4891258 -150738862 + AT_rich Low_complexity Low_complexity 1 73 0 5 622 32973 71 2 3 chr4 4891319 4896800 -150733320 - L1Md_F2 LINE L1 -14 6571 1013 5 622 1407 47 0 63 chr4 4896800 4896844 -150733276 - B2_Mm1a SINE B2 0 193 161 5 622 207 0 0 0 chr4 4896844 4896867 -150733253 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 622 1407 47 0 63 chr4 4896867 4897028 -150733092 - B2_Mm1a SINE B2 -33 160 1 5 622 5415 83 4 39 chr4 4897028 4897720 -150732400 - L1Md_F2 LINE L1 -5510 1012 333 5 622 835 249 55 0 chr4 4897741 4897942 -150732178 - B3 SINE B2 -1 215 4 5 622 281 247 96 24 chr4 4898587 4898670 -150731450 + B4 SINE B4 5 93 -199 5 622 339 25 0 0 chr4 4898929 4898969 -150731151 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 622 2546 242 64 63 chr4 4899053 4900696 -150729424 + L1_Mur3 LINE L1 286 1944 -3936 5 622 467 33 16 0 chr4 4901815 4901876 -150728244 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 622 824 294 104 42 chr4 4902222 4903247 -150726873 - L1MA7 LINE L1 -356 5935 4777 5 622 3294 55 2 7 chr4 4903272 4903697 -150726423 - L1Md_F3 LINE L1 -15 6569 6147 5 622 245 269 88 23 chr4 4904616 4904749 -150725371 + MIRc SINE MIR 8 146 -62 5 622 233 245 57 145 chr4 4904766 4904890 -150725230 + B1F2 SINE Alu 37 149 0 5 622 207 0 0 0 chr4 4905040 4905063 -150725057 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 622 323 252 120 47 chr4 4905069 4905219 -150724901 + Tigger15a DNA TcMar 153 313 -402 5 622 402 184 27 80 chr4 4905507 4905619 -150724501 + Tigger15a DNA TcMar 537 642 -73 5 622 329 267 15 15 chr4 4906029 4906166 -150723954 - L1M2 LINE L1 -1513 4627 4491 5 622 698 317 22 5 chr4 4906174 4906358 -150723762 - B3 SINE B2 -3 213 27 5 622 6055 70 12 7 chr4 4906371 4907253 -150722867 - L1Md_F2 LINE L1 0 6582 5710 5 622 249 108 0 0 chr4 4907253 4907290 -150722830 - B3A SINE B2 -157 41 5 5 622 343 268 43 80 chr4 4907312 4907474 -150722646 - L1M2 LINE L1 -1661 4482 4327 5 622 1901 220 24 12 chr4 4907482 4907891 -150722229 - MTC LTR MaLR -7 414 1 5 622 953 299 71 40 chr4 4907891 4908324 -150721796 - L1_Mur3 LINE L1 -1582 4298 3840 5 622 3757 173 25 10 chr4 4908324 4909006 -150721114 - RLTR17 LTR ERVK 0 692 1 5 622 953 299 71 40 chr4 4909006 4909250 -150720870 - L1_Mur3 LINE L1 -2041 3839 3600 5 622 341 179 38 25 chr4 4909269 4909349 -150720771 - MTC LTR MaLR -335 86 6 5 622 335 253 0 0 chr4 4909542 4909625 -150720495 - Lx9 LINE L1 -174 7470 7388 5 622 480 121 0 0 chr4 4911098 4911184 -150718936 + ORR1A3 LTR MaLR 1 86 -243 5 622 1073 119 0 42 chr4 4911401 4911594 -150718526 - L1_Mus2 LINE L1 0 6566 6382 5 622 382 359 16 0 chr4 4912575 4912703 -150717417 - RSINE1 SINE B4 -7 158 29 5 622 302 314 92 28 chr4 4915088 4915229 -150714891 + HAL1-3A_ME LINE L1 2280 2429 -429 5 622 203 288 144 21 chr4 4915309 4915406 -150714714 - MIR3 SINE MIR -151 125 12 5 622 306 300 36 9 chr4 4915463 4915574 -150714546 + MIR SINE MIR 74 187 -75 5 622 2132 136 3 6 chr4 4916675 4917001 -150713119 - ORR1A4 LTR MaLR 0 329 5 5 622 432 274 22 92 chr4 4917845 4918030 -150712090 + Lx8 LINE L1 6988 7159 -314 5 622 654 291 20 5 chr4 4918085 4918289 -150711831 - Lx8 LINE L1 -441 7032 6826 5 622 350 277 42 35 chr4 4918293 4918435 -150711685 + MER2 DNA MER2_type 105 247 -98 5 622 876 221 82 0 chr4 4918966 4919174 -150710946 + URR1B DNA MER1_type 1 225 0 5 622 2802 46 0 20 chr4 4919643 4919997 -150710123 - L1_Mus1 LINE L1 -1 6566 6220 5 622 280 230 13 26 chr4 4920340 4920416 -150709704 + (TATG)n Simple_repeat Simple_repeat 3 77 0 5 622 1225 282 63 30 chr4 4920987 4921491 -150708629 - Lx7 LINE L1 -375 7321 6801 5 622 295 292 95 25 chr4 4922749 4922991 -150707129 - L1MDb LINE L1 -4682 1951 1693 5 622 448 292 32 36 chr4 4923010 4923262 -150706858 - L1MDb LINE L1 -5211 1329 1079 5 622 297 299 18 18 chr4 4924015 4924124 -150705996 + MLT1B LTR MaLR 282 390 0 5 622 420 334 106 31 chr4 4924126 4924581 -150705539 + MLT1B-int LTR MaLR 4 611 -760 5 622 882 132 7 0 chr4 4924588 4924724 -150705396 - B1_Mus2 SINE Alu 0 147 11 5 622 498 245 78 42 chr4 4924724 4924753 -150705367 - ID_B1 SINE B4 -1 222 52 5 622 312 83 0 0 chr4 4925325 4925373 -150704747 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 622 23 0 0 0 chr4 4925434 4925457 -150704663 + AT_rich Low_complexity Low_complexity 1 23 0 5 622 2073 78 14 21 chr4 4925996 4926284 -150703836 + MT2C_Mm LTR ERVL 190 475 0 6 622 642 89 0 0 chr4 4926292 4926382 -150703738 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 6 622 369 0 0 0 chr4 4926581 4926622 -150703498 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 622 261 0 0 0 chr4 4926622 4926650 -150703470 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 622 21 0 0 0 chr4 4926839 4926860 -150703260 + AT_rich Low_complexity Low_complexity 1 21 0 6 622 21 0 0 0 chr4 4926897 4926918 -150703202 + AT_rich Low_complexity Low_complexity 1 21 0 6 622 6181 62 9 2 chr4 4926918 4927713 -150702407 - L1Md_F2 LINE L1 0 6582 5783 6 622 39334 5 1 0 chr4 4927722 4934040 -150696080 - L1Md_A LINE L1 0 6582 261 6 622 2041 73 11 0 chr4 4934027 4934301 -150695819 - L1Md_A LINE L1 -69 5814 5538 6 622 2153 92 36 0 chr4 4934303 4934609 -150695511 - Lx3_Mus LINE L1 -8 7001 6685 6 622 4040 80 9 3 chr4 4934611 4935188 -150694932 + L1_Mur1 LINE L1 5219 5798 -88 6 622 913 97 0 0 chr4 4935188 4935312 -150694808 + B1_Mus2 SINE Alu 13 136 -11 6 622 198 0 0 0 chr4 4935313 4935335 -150694785 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 622 2303 96 3 3 chr4 4935352 4935687 -150694433 + Lx3_Mus LINE L1 6411 6745 -264 6 622 332 312 87 14 chr4 4935729 4935947 -150694173 - MER2 DNA MER2_type -80 265 32 6 622 657 36 0 0 chr4 4936320 4936404 -150693716 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 622 331 236 210 24 chr4 4936415 4936558 -150693562 + MTC-int LTR MaLR 6 212 -886 6 622 23 0 0 0 chr4 4939227 4939250 -150690870 + AT_rich Low_complexity Low_complexity 1 23 0 6 622 1354 281 35 57 chr4 4939250 4939797 -150690323 - Lx8 LINE L1 -2 7471 6937 6 622 31 26 0 0 chr4 4939797 4939835 -150690285 + AT_rich Low_complexity Low_complexity 1 38 0 6 622 331 333 114 0 chr4 4939885 4939999 -150690121 - B3 SINE B2 -84 132 6 6 622 1799 283 97 16 chr4 4940004 4940765 -150689355 - Lx8 LINE L1 -524 6949 6127 6 622 24806 70 6 9 chr4 4940802 4947017 -150683103 - L1Md_F3 LINE L1 0 6584 404 6 622 2551 201 93 2 chr4 4947221 4947768 -150682352 + Lx5 LINE L1 6447 7043 -7 6 622 589 131 19 0 chr4 4948265 4948372 -150681748 + (TC)n Simple_repeat Simple_repeat 1 109 0 6 622 180 152 0 0 chr4 4948386 4948419 -150681701 + CT-rich Low_complexity Low_complexity 1 33 0 6 622 600 340 0 0 chr4 4949401 4949557 -150680563 + RSINE1 SINE B4 2 157 -8 6 622 252 86 0 0 chr4 4949890 4949925 -150680195 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 622 399 41 0 0 chr4 4950097 4950146 -150679974 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 622 403 252 9 43 chr4 4951002 4951118 -150679002 - PB1D10 SINE Alu -4 113 2 6 622 282 29 0 0 chr4 4951245 4951280 -150678840 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 622 679 69 20 0 chr4 4951280 4951381 -150678739 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 622 256 222 22 0 chr4 4951398 4951488 -150678632 + Lx9 LINE L1 7504 7595 -49 6 622 333 0 0 0 chr4 4951500 4951537 -150678583 + (TAA)n Simple_repeat Simple_repeat 3 39 0 6 622 224 240 20 0 chr4 4951582 4951632 -150678488 + PB1D10 SINE Alu 43 93 -24 6 622 456 304 92 12 chr4 4951637 4951800 -150678320 + B3 SINE B2 1 176 -40 6 622 670 284 77 11 chr4 4952074 4952426 -150677694 + L1MC LINE L1 3278 3652 -2494 6 622 21304 83 6 18 chr4 4952449 4956435 -150673685 + L1VL1 LINE L1 409 4341 -1542 6 622 466 249 0 1 chr4 4956437 4956573 -150673547 + Lx7 LINE L1 5672 5808 -1250 6 622 2621 276 70 23 chr4 4956764 4957726 -150672394 + Lx8 LINE L1 6140 7146 -327 6 622 552 325 54 18 chr4 4957889 4958165 -150671955 + B4A SINE B4 2 287 -5 6 622 565 250 29 29 chr4 4958364 4958537 -150671583 + Lx8 LINE L1 6189 6361 -1112 6 622 577 283 185 56 chr4 4958535 4959619 -150670501 + L1MC LINE L1 4475 5698 -2087 6 622 1742 208 9 14 chr4 4959623 4959986 -150670134 + ORR1B1 LTR MaLR 1 392 -2 6 622 625 292 34 28 chr4 4960464 4960640 -150669480 + B3 SINE B2 17 193 -23 6 622 22 0 0 0 chr4 4960642 4960664 -150669456 + AT_rich Low_complexity Low_complexity 1 22 0 6 622 305 172 103 0 chr4 4960698 4960756 -150669364 - B1_Mur3 SINE Alu -84 65 2 6 622 193 118 19 19 chr4 4960910 4960962 -150669158 + T-rich Low_complexity Low_complexity 3 54 0 6 622 3246 155 42 17 chr4 4960987 4961589 -150668531 - Lx4B LINE L1 -6 7052 6436 6 622 351 0 0 0 chr4 4961591 4961630 -150668490 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 622 222 62 0 0 chr4 4962005 4962037 -150668083 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 622 197 167 19 0 chr4 4962449 4962503 -150667617 + CT-rich Low_complexity Low_complexity 2 56 0 6 622 491 191 19 25 chr4 4962531 4962692 -150667428 + CT-rich Low_complexity Low_complexity 3 162 0 6 622 198 0 0 0 chr4 4962694 4962716 -150667404 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 622 223 273 0 120 chr4 4962717 4962792 -150667328 - PB1D10 SINE Alu -21 96 31 6 622 1011 197 196 39 chr4 4962942 4963255 -150666865 + ORR1D1 LTR MaLR 3 364 -6 6 622 2134 106 10 3 chr4 4963690 4964001 -150666119 + L1_Mus3 LINE L1 6326 6638 0 6 622 207 0 0 0 chr4 4964385 4964408 -150665712 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 622 316 179 18 0 chr4 4964408 4964520 -150665600 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 622 232 147 77 39 chr4 4964535 4964613 -150665507 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 6 622 456 305 70 55 chr4 4964626 4964827 -150665293 + B4 SINE B4 4 207 -85 6 622 208 243 14 41 chr4 4964870 4964943 -150665177 + (CATA)n Simple_repeat Simple_repeat 1 71 0 6 622 477 0 0 0 chr4 4965303 4965356 -150664764 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 6 622 251 48 71 0 chr4 4965358 4965400 -150664720 - L1_Mus2 LINE L1 -19 6547 6503 6 622 579 100 0 91 chr4 4965418 4965517 -150664603 + RLTR9B2 LTR ERVK 1 90 -330 6 622 417 39 0 0 chr4 4965517 4965568 -150664552 + (GGGGA)n Simple_repeat Simple_repeat 3 53 0 6 622 4564 123 77 12 chr4 4965570 4966426 -150663694 + ETnERV2-int LTR ERVK 1082 1993 -5413 6 622 38261 21 4 6 chr4 4966426 4973023 -150657097 - L1Md_A LINE L1 -1 6581 4 6 622 1688 120 0 4 chr4 4973023 4973283 -150656837 + ETnERV2-int LTR ERVK 1986 2244 -5162 6 622 8690 149 40 11 chr4 4973274 4975066 -150655054 + ETnERV2-int LTR ERVK 1565 4098 -3308 6 622 2316 177 0 3 chr4 4975063 4975442 -150654678 + ETnERV2-int LTR ERVK 4419 4796 -2610 6 622 650 173 0 0 chr4 4975436 4975540 -150654580 + ETnERV2-int LTR ERVK 4931 5034 -2372 6 622 10506 147 7 25 chr4 4975534 4977347 -150652773 + ETnERV2-int LTR ERVK 4650 6429 -977 6 622 432 95 27 13 chr4 4977547 4977622 -150652498 + ETnERV2-int LTR ERVK 7331 7406 0 6 622 2507 139 17 20 chr4 4977622 4978026 -150652094 + RLTR9D LTR ERVK 1 403 0 6 622 27924 111 6 10 chr4 4978030 4980493 -150649627 - L1_Mus2 LINE L1 -553 6013 3555 6 77 3517 38 28 7 chr4 4980493 4980920 -150649200 + RLTR10C LTR ERVK 1 436 0 6 623 27924 139 26 11 chr4 4980920 4984169 -150645951 - L1_Mus2 LINE L1 -2329 3554 264 6 623 230 73 24 0 chr4 4984768 4984809 -150645311 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 623 849 184 85 6 chr4 4985967 4986131 -150643989 - RMER20B LTR ERVK -441 186 10 6 623 660 275 42 24 chr4 4986173 4986505 -150643615 - L1ME2z LINE L1 -454 5990 5653 6 623 380 250 11 53 chr4 4987038 4987228 -150642892 - L1ME2z LINE L1 -862 5435 5254 6 623 4579 114 82 77 chr4 4987226 4988143 -150641977 + L1_Mus2 LINE L1 5670 6566 0 6 623 183 80 0 0 chr4 4988153 4988178 -150641942 + (A)n Simple_repeat Simple_repeat 1 25 0 6 623 261 0 0 0 chr4 4988348 4988377 -150641743 + (T)n Simple_repeat Simple_repeat 1 29 0 6 623 1127 101 0 6 chr4 4988377 4988547 -150641573 - Lx4B LINE L1 -1301 5757 5589 6 623 35389 40 14 9 chr4 4988545 4994042 -150636078 - L1Md_F3 LINE L1 -2 6582 1078 6 623 846 238 23 162 chr4 4994076 4994508 -150635612 - ORR1D1 LTR MaLR 0 374 3 6 623 373 185 282 18 chr4 4994597 4994634 -150635486 - MT2A LTR ERVL -4 529 493 6 623 536 95 12 0 chr4 4994634 4994718 -150635402 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 6 623 373 185 282 18 chr4 4994718 4994790 -150635330 - MT2A LTR ERVL -41 492 391 6 623 409 253 31 130 chr4 4996749 4997111 -150633009 + RLTR12B LTR ERVK 151 500 -28 6 623 572 236 120 49 chr4 4997939 4998122 -150631998 + B3A SINE B2 3 198 0 6 623 210 267 0 0 chr4 4998836 4998881 -150631239 - B1F SINE Alu -94 55 11 6 623 498 309 71 122 chr4 4999017 4999371 -150630749 + MTEb LTR MaLR 3 338 -41 6 623 243 301 59 15 chr4 4999474 4999609 -150630511 + MLT1D LTR MaLR 70 210 -295 6 623 278 296 11 5 chr4 4999837 4999928 -150630192 + PB1 SINE Alu 21 120 -7 6 623 241 48 47 23 chr4 5000388 5000431 -150629689 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 623 408 285 11 0 chr4 5000893 5001080 -150629040 + (CA)n Simple_repeat Simple_repeat 1 189 0 2 623 305 235 14 29 chr4 5001140 5001210 -150628910 + RLTR18-int LTR ERVK 4880 4948 -413 3 623 267 307 40 0 chr4 5001674 5001692 -150628428 + B4 SINE B4 66 143 -149 4 623 302 228 0 0 chr4 5001692 5001749 -150628371 + B1_Mus2 SINE Alu 2 58 -89 5 623 444 160 0 0 chr4 5001787 5001906 -150628214 + GA-rich Low_complexity Low_complexity 6 124 0 6 623 814 271 28 19 chr4 5001965 5002179 -150627941 - B3 SINE B2 0 216 1 7 623 381 22 0 0 chr4 5002231 5002277 -150627843 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 8 623 432 0 0 0 chr4 5002296 5002344 -150627776 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 623 482 266 155 60 chr4 5002820 5003072 -150627048 + RMER21B LTR ERV1 275 550 -292 1 623 1138 208 89 159 chr4 5004021 5004122 -150625998 + MTB LTR MaLR 1 103 -297 1 623 1053 139 0 0 chr4 5004122 5004295 -150625825 + (TTTTC)n Simple_repeat Simple_repeat 3 175 0 1 623 2401 109 9 0 chr4 5004296 5004663 -150625457 - L1_Mus3 LINE L1 0 6638 6299 1 623 1138 208 89 159 chr4 5004663 5004929 -150625191 + MTB LTR MaLR 104 346 -54 1 623 627 39 0 0 chr4 5004934 5005012 -150625108 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 623 647 57 11 0 chr4 5005014 5005102 -150625018 + (GGGA)n Simple_repeat Simple_repeat 1 89 0 1 623 180 0 0 0 chr4 5005111 5005131 -150624989 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 1 623 380 212 0 0 chr4 5005140 5005206 -150624914 + RodERV21-int LTR ERV1 2385 2450 -2541 1 623 3637 33 2 0 chr4 5005220 5005615 -150624505 + MTA_Mm LTR MaLR 1 396 0 1 623 522 243 168 10 chr4 5005634 5005842 -150624278 + RMER21B LTR ERV1 327 567 -275 1 623 514 264 0 39 chr4 5005935 5006065 -150624055 + RodERV21-int LTR ERV1 7 131 -4860 2 623 452 267 63 140 chr4 5006311 5006588 -150623532 + MTC-int LTR MaLR 467 637 -621 2 623 335 275 0 12 chr4 5006640 5006721 -150623399 + RodERV21-int LTR ERV1 4575 4654 -337 2 623 2758 179 134 14 chr4 5006731 5007254 -150622866 - RMER1B Other Other -14 1052 467 2 623 1047 76 23 6 chr4 5007359 5007530 -150622590 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 2 623 353 125 31 0 chr4 5007532 5007596 -150622524 + CT-rich Low_complexity Low_complexity 4 69 0 2 623 830 241 57 10 chr4 5007598 5007791 -150622329 - Lx5 LINE L1 0 7050 6849 2 623 1139 245 0 0 chr4 5007803 5008015 -150622105 - Lx5 LINE L1 -435 6615 6404 2 623 2275 216 109 7 chr4 5008013 5008553 -150621567 + Lx5 LINE L1 5812 6406 -644 2 623 319 314 66 8 chr4 5010508 5010630 -150619490 - MER3 DNA MER1_type -1 208 80 2 623 677 238 0 0 chr4 5010755 5010877 -150619243 + B1_Mur1 SINE Alu 23 144 -5 2 623 264 350 29 49 chr4 5011050 5011152 -150618968 + RSINE1 SINE B4 5 104 -61 2 623 833 150 8 0 chr4 5011267 5011400 -150618720 - B1_Mur2 SINE Alu 0 149 16 2 623 297 68 0 0 chr4 5011411 5011455 -150618665 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 623 609 269 42 14 chr4 5011475 5011618 -150618502 - B3A SINE B2 -48 150 4 3 623 225 366 0 0 chr4 5012101 5012183 -150617937 - ID4_ SINE ID -1 82 1 3 623 270 190 50 33 chr4 5012401 5012461 -150617659 + B3A SINE B2 4 64 -134 3 623 1623 197 79 0 chr4 5012459 5012789 -150617331 - RLTR30 LTR ERV1 -16 363 8 3 623 342 0 0 0 chr4 5013504 5013542 -150616578 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 623 541 254 100 0 chr4 5014008 5014118 -150616002 + B1F1 SINE Alu 1 121 -28 3 623 584 230 38 38 chr4 5014582 5014767 -150615353 - RCHARR1 DNA MER1_type -15 959 775 3 623 1013 283 128 3 chr4 5014769 5015106 -150615014 - MTEa LTR MaLR 0 379 1 3 623 1531 187 34 6 chr4 5015107 5015456 -150614664 - RCHARR1 DNA MER1_type -275 699 341 3 623 637 305 39 12 chr4 5015458 5015667 -150614453 + B3 SINE B2 3 195 0 3 623 465 246 114 45 chr4 5015707 5015839 -150614281 + B1_Mur1 SINE Alu 3 143 -6 4 623 185 178 0 22 chr4 5015855 5015901 -150614219 + GA-rich Low_complexity Low_complexity 3 47 0 4 623 726 293 116 12 chr4 5015939 5016198 -150613922 - RCHARR1 DNA MER1_type -641 333 48 3 623 302 311 97 0 chr4 5016293 5016396 -150613724 - MER2 DNA MER2_type -226 119 7 4 623 21 36 0 0 chr4 5017770 5017798 -150612322 + AT_rich Low_complexity Low_complexity 1 28 0 4 623 38280 45 3 3 chr4 5017879 5024264 -150605856 - L1Md_T LINE L1 0 6585 105 4 623 659 310 27 16 chr4 5024336 5024508 -150605612 + B3A SINE B2 2 178 -20 4 623 416 51 0 17 chr4 5024508 5024568 -150605552 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 623 659 310 27 16 chr4 5024568 5024582 -150605538 + B3A SINE B2 179 190 -8 4 623 1029 230 23 28 chr4 5025229 5025444 -150604676 - B3 SINE B2 0 216 3 4 623 3615 176 39 33 chr4 5025748 5026320 -150603800 + RLTR17 LTR ERVK 1 595 -97 4 623 1624 23 0 11 chr4 5026320 5026496 -150603624 + B2_Mm1a SINE B2 1 174 -19 4 623 3615 176 39 33 chr4 5026496 5026589 -150603531 + RLTR17 LTR ERVK 596 670 -22 4 623 180 0 0 0 chr4 5026590 5026610 -150603510 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 623 363 250 128 60 chr4 5027368 5027517 -150602603 - RSINE1 SINE B4 -2 163 5 5 623 1470 184 221 10 chr4 5027568 5027880 -150602240 - MTC LTR MaLR -8 413 36 5 623 1102 114 0 23 chr4 5028731 5028902 -150601218 + B2_Mm2 SINE B2 2 168 -27 5 623 286 143 0 0 chr4 5029131 5029173 -150600947 + L1VL4 LINE L1 1 42 -6260 5 623 2941 199 84 27 chr4 5029173 5029912 -150600208 + MusHAL1 LINE L1 4 784 -2570 5 623 1274 145 73 60 chr4 5029880 5030180 -150599940 + L1_Mur2 LINE L1 2211 2514 -3363 5 623 2322 144 22 8 chr4 5030180 5030543 -150599577 + RLTR9A LTR ERVK 1 368 0 5 623 1135 296 33 32 chr4 5030545 5031139 -150598981 + ETnERV-int LTR ERVK 4 663 -2651 5 623 993 244 64 7 chr4 5031204 5031494 -150598626 - SRV_MM-int LTR ERVK -4161 2006 1722 5 623 11305 138 51 25 chr4 5031623 5033729 -150596391 + L1_Mur2 LINE L1 2517 4677 -1200 5 623 27739 131 16 24 chr4 5033725 5038073 -150592047 + Lx4B LINE L1 404 4689 -1194 6 623 7390 97 16 3 chr4 5038073 5039056 -150591064 + L1Md_F2 LINE L1 5587 6582 0 6 623 27739 144 14 10 chr4 5039056 5040271 -150589849 + Lx4B LINE L1 4690 5933 -1125 6 623 3201 251 94 21 chr4 5040274 5041275 -150588845 + Lx9 LINE L1 6414 7487 -157 6 623 510 271 65 62 chr4 5041306 5041647 -150588473 - MLT1B LTR MaLR -7 383 4 6 623 238 362 7 7 chr4 5041819 5041972 -150588148 + (TA)n Simple_repeat Simple_repeat 2 154 0 6 623 737 358 10 24 chr4 5042492 5042784 -150587336 - B4A SINE B4 0 292 5 6 623 9139 110 15 7 chr4 5042967 5044408 -150585712 + Lx3A LINE L1 5533 6981 0 6 623 1225 86 55 6 chr4 5044429 5044593 -150585527 + B2_Mm2 SINE B2 5 176 -19 6 623 1230 88 0 0 chr4 5044619 5044766 -150585354 - B1_Mm SINE Alu 0 147 1 6 623 367 325 0 9 chr4 5046070 5046185 -150583935 + Tigger5 DNA MER2_type 2293 2406 0 6 623 872 250 15 5 chr4 5046457 5046651 -150583469 + Lx5 LINE L1 6840 7036 -14 7 623 180 77 0 0 chr4 5046651 5046677 -150583443 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 7 623 2341 168 18 3 chr4 5046889 5047277 -150582843 + ORR1B1 LTR MaLR 1 394 0 7 623 1969 236 71 19 chr4 5047613 5048093 -150582027 - RLTR16 LTR ERVK 0 505 1 7 623 1551 217 64 103 chr4 5048157 5048593 -150581527 + MTD LTR MaLR 1 419 0 7 623 537 304 105 22 chr4 5048617 5048846 -150581274 - MER47B DNA MER2_type -146 272 25 7 623 5612 234 67 23 chr4 5048864 5050188 -150579932 + Lx6 LINE L1 6078 7460 0 7 623 578 294 78 21 chr4 5050453 5050506 -150579614 - B3 SINE B2 0 216 166 7 623 450 0 0 0 chr4 5050506 5050556 -150579564 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 623 690 250 103 0 chr4 5050556 5050693 -150579427 - B3A SINE B2 -51 165 15 7 623 5635 89 105 27 chr4 5051627 5052468 -150577652 + RMER17A2 LTR ERVK 1 906 0 7 623 624 264 0 63 chr4 5052609 5052783 -150577337 - RSINE1 SINE B4 0 165 3 8 623 279 79 0 0 chr4 5053857 5053895 -150576225 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 8 623 7868 40 3 0 chr4 5054610 5055509 -150574611 + L1Md_F3 LINE L1 5668 6569 -15 8 623 226 314 43 0 chr4 5058702 5058772 -150571348 - ID4 SINE ID -10 73 1 8 623 296 370 64 29 chr4 5059324 5059605 -150570515 - Lx8 LINE L1 -287 7186 6896 8 623 772 260 45 10 chr4 5059631 5059833 -150570287 - Lx8 LINE L1 -1023 6450 6242 8 623 1966 144 9 46 chr4 5059905 5060254 -150569866 - Lx LINE L1 -2 6652 6317 8 623 729 259 7 0 chr4 5060273 5060412 -150569708 + RSINE1 SINE B4 3 142 -23 8 623 282 277 59 0 chr4 5060742 5060843 -150569277 + Lx8 LINE L1 6702 6808 -665 8 623 486 0 0 0 chr4 5062079 5062133 -150567987 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 8 623 308 83 62 0 chr4 5062133 5062181 -150567939 + ORR1A4 LTR MaLR 279 329 0 8 623 324 0 0 0 chr4 5062197 5062233 -150567887 + (CATA)n Simple_repeat Simple_repeat 2 37 0 9 623 402 202 208 8 chr4 5062353 5062473 -150567647 + B1F SINE Alu 1 144 -5 9 623 278 284 142 13 chr4 5062614 5062792 -150567328 - MIR3 SINE MIR -52 216 15 9 623 1491 23 0 0 chr4 5062997 5063172 -150566948 + (TTTCC)n Simple_repeat Simple_repeat 1 175 0 9 623 1029 79 0 0 chr4 5063174 5063314 -150566806 + (TCTCC)n Simple_repeat Simple_repeat 4 143 0 9 623 186 43 0 0 chr4 5063314 5063337 -150566783 + (TTTCC)n Simple_repeat Simple_repeat 4 26 0 9 623 581 339 54 7 chr4 5064291 5064609 -150565511 - MER2 DNA MER2_type -1 344 8 9 623 977 137 6 0 chr4 5065332 5065500 -150564620 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 9 623 963 228 36 8 chr4 5065503 5065751 -150564369 - Lx5 LINE L1 -23 7027 6773 9 623 6962 77 12 1 chr4 5066953 5067916 -150562204 + L1_Mus3 LINE L1 5650 6623 -15 9 623 507 294 21 7 chr4 5067995 5068139 -150561981 + RSINE1 SINE B4 4 149 -16 1 623 189 121 0 0 chr4 5069559 5069592 -150560528 + (TATG)n Simple_repeat Simple_repeat 4 36 0 1 623 243 386 12 24 chr4 5069595 5069680 -150560440 - RSINE1 SINE B4 0 165 82 1 623 2123 127 15 6 chr4 5070344 5070678 -150559442 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 623 8338 46 9 6 chr4 5070680 5071753 -150558367 - IAPEz-int LTR ERVK -2 6479 5403 1 623 12208 67 93 24 chr4 5071734 5074226 -150555894 - IAPEz-int LTR ERVK -3811 2670 8 1 623 2123 127 15 6 chr4 5074226 5074560 -150555560 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 623 504 0 0 0 chr4 5075274 5075330 -150554790 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 623 3431 126 31 6 chr4 5075992 5076542 -150553578 + LTRIS2 LTR ERV1 1 564 0 1 623 4089 116 12 3 chr4 5076714 5077313 -150552807 - Lx LINE L1 -12 6642 6039 1 623 1667 223 77 41 chr4 5077379 5077889 -150552231 - RLTR12B LTR ERVK 0 528 1 1 623 309 51 0 0 chr4 5078062 5078101 -150552019 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 623 24507 99 89 7 chr4 5078121 5083998 -150546122 - L1Md_F2 LINE L1 -2 6580 177 1 623 1096 282 238 25 chr4 5084906 5085800 -150544320 + L1_Mur3 LINE L1 2633 3812 -2068 1 623 321 26 0 0 chr4 5085800 5085838 -150544282 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 1 623 1096 282 238 25 chr4 5085838 5086392 -150543728 + L1_Mur3 LINE L1 3813 4388 -1492 1 623 553 268 111 4 chr4 5086938 5087208 -150542912 + L1_Mur3 LINE L1 4399 4697 -1183 1 623 259 233 27 64 chr4 5087208 5087318 -150542802 + RMER12 LTR ERVK 745 850 -472 1 623 306 148 0 0 chr4 5087318 5087372 -150542748 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 623 1432 278 107 30 chr4 5087372 5088311 -150541809 + L1_Mur3 LINE L1 4740 5717 -130 1 623 1671 316 56 17 chr4 5088303 5089065 -150541055 + Lx8 LINE L1 6607 7398 -75 1 623 780 32 0 0 chr4 5089755 5089850 -150540270 + (GA)n Simple_repeat Simple_repeat 1 95 0 1 623 21 36 0 0 chr4 5089860 5089888 -150540232 + AT_rich Low_complexity Low_complexity 1 28 0 1 623 3242 3 0 0 chr4 5091049 5091408 -150538712 + L1Md_A LINE L1 6224 6582 0 1 623 405 0 0 0 chr4 5091530 5091575 -150538545 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 623 28 61 0 0 chr4 5092785 5092834 -150537286 + AT_rich Low_complexity Low_complexity 1 49 0 1 623 493 298 11 92 chr4 5092863 5093037 -150537083 - B3A SINE B2 -16 182 23 1 623 25 0 0 0 chr4 5093040 5093065 -150537055 + AT_rich Low_complexity Low_complexity 1 25 0 1 623 180 125 0 0 chr4 5093177 5093209 -150536911 + (A)n Simple_repeat Simple_repeat 1 32 0 1 623 214 245 0 0 chr4 5094057 5094106 -150536014 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 623 397 268 5 48 chr4 5094120 5094308 -150535812 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 623 486 0 0 0 chr4 5094317 5094371 -150535749 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 623 528 93 0 0 chr4 5095503 5095578 -150534542 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 623 1322 199 78 36 chr4 5095599 5095933 -150534187 + RMER10A LTR ERVL 1 348 -94 1 623 450 53 0 0 chr4 5095956 5096013 -150534107 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 1 623 666 109 0 0 chr4 5096018 5096119 -150534001 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1 623 2099 175 18 3 chr4 5096420 5096804 -150533316 + Lx4A LINE L1 6667 7056 -2 1 623 197 233 145 40 chr4 5096836 5096912 -150533208 - L4 LINE RTE -259 1770 1687 1 623 345 243 18 27 chr4 5097191 5097301 -150532819 + RLTR19-int LTR ERVK 3603 3711 -2426 1 623 541 248 28 78 chr4 5097375 5097659 -150532461 + RMER17C-int LTR ERVK 2603 2872 -366 1 623 782 242 94 72 chr4 5097997 5098360 -150531760 + RMER10A LTR ERVL 1 417 -25 1 623 243 0 0 0 chr4 5098360 5098387 -150531733 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 623 440 261 26 146 chr4 5098387 5098409 -150531711 + RMER10A LTR ERVL 418 437 -5 1 623 720 175 26 7 chr4 5098989 5099144 -150530976 - Lx3_Mus LINE L1 -5 7004 6847 1 623 1441 130 83 0 chr4 5099144 5099420 -150530700 + Lx3_Mus LINE L1 5917 6215 -794 1 623 311 276 11 11 chr4 5099588 5099676 -150530444 + CT-rich Low_complexity Low_complexity 2 89 0 1 623 18951 105 9 1 chr4 5100557 5104270 -150525850 + L1VL1 LINE L1 409 4254 -1629 1 623 3922 273 29 21 chr4 5104271 5107300 -150522820 - SRV_MM-int LTR ERVK -2766 4640 934 1 623 590 271 34 54 chr4 5107328 5107765 -150522355 - SRV_MM-int LTR ERVK -2817 497 4 1 623 2112 145 72 11 chr4 5107767 5108144 -150521976 - RLTR9D LTR ERVK -3 400 1 1 623 2387 66 0 21 chr4 5109071 5109396 -150520724 - L1_Mus1 LINE L1 0 6567 6250 1 623 244 279 12 25 chr4 5109446 5109527 -150520593 + L1M5 LINE L1 5521 5600 -524 1 623 27 0 0 0 chr4 5110483 5110510 -150519610 + AT_rich Low_complexity Low_complexity 1 27 0 1 77 2975 15 6 0 chr4 5111786 5112121 -150517999 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 624 53869 19 9 5 chr4 5112121 5118569 -150511551 - IAPEz-int LTR ERVK 0 6481 8 1 624 2985 12 6 0 chr4 5118569 5118904 -150511216 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 624 386 364 59 7 chr4 5120238 5120390 -150509730 - RSINE1 SINE B4 0 165 6 1 624 226 340 146 25 chr4 5120490 5120689 -150509431 - MIR SINE MIR -14 248 26 1 624 1958 154 59 8 chr4 5121429 5121801 -150508319 + RLTR9D LTR ERVK 1 391 -12 1 624 202 311 40 0 chr4 5122060 5122134 -150507986 + MIR3 SINE MIR 83 159 -49 1 624 395 362 63 0 chr4 5122252 5122426 -150507694 + MER21B LTR ERV1 20 204 -659 1 624 198 0 0 0 chr4 5122426 5122448 -150507672 + (T)n Simple_repeat Simple_repeat 1 22 0 1 624 570 341 79 19 chr4 5122592 5122971 -150507149 + MER21B LTR ERV1 411 812 -51 1 624 25 0 0 0 chr4 5123019 5123044 -150507076 + AT_rich Low_complexity Low_complexity 1 25 0 1 624 654 25 0 0 chr4 5123959 5124039 -150506081 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 624 410 53 0 17 chr4 5124048 5124106 -150506014 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 1 624 570 185 111 3 chr4 5124107 5124253 -150505867 - Lx4A LINE L1 -20 7038 6881 1 624 1378 244 62 71 chr4 5124886 5125406 -150504714 + RLTR40 LTR ERVK 2 516 -301 1 624 213 65 0 0 chr4 5125410 5125441 -150504679 + (T)n Simple_repeat Simple_repeat 1 31 0 1 624 296 24 24 0 chr4 5125512 5125553 -150504567 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 624 755 50 10 0 chr4 5125553 5125652 -150504468 + (GA)n Simple_repeat Simple_repeat 2 102 0 1 624 4053 189 8 22 chr4 5125744 5126798 -150503322 - Lx2 LINE L1 -348 5499 4518 1 624 6055 134 26 4 chr4 5126795 5127885 -150502235 + Lx2 LINE L1 5531 6643 -354 1 624 1252 167 37 0 chr4 5127885 5128100 -150502020 + Lx2 LINE L1 6775 6997 0 1 624 7156 73 11 7 chr4 5128304 5129460 -150500660 - L1_Mus2 LINE L1 0 6566 5406 1 624 3080 120 89 41 chr4 5129601 5130138 -150499982 + RMER2 LTR ERV1 1 563 -4 1 624 3843 171 19 19 chr4 5130154 5130845 -150499275 - RLTR17 LTR ERVK -1 691 1 1 624 230 284 108 0 chr4 5131928 5132002 -150498118 - L2c LINE L2 -233 3154 3073 1 624 23 0 0 0 chr4 5132411 5132434 -150497686 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 541 277 14 7 chr4 5132500 5132638 -150497482 + B3 SINE B2 1 139 -77 1 624 243 247 50 0 chr4 5132717 5132780 -150497340 + B1F SINE Alu 28 91 -56 1 624 249 139 0 0 chr4 5132781 5132824 -150497296 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 1 624 198 167 0 0 chr4 5133485 5133521 -150496599 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 624 1202 84 18 0 chr4 5135589 5135755 -150494365 - B2_Mm2 SINE B2 -24 171 3 1 624 277 389 50 7 chr4 5136004 5136144 -150493976 - RSINE1 SINE B4 -9 156 11 1 624 206 146 24 0 chr4 5137297 5137338 -150492782 + A-rich Low_complexity Low_complexity 5 46 0 1 624 1427 227 16 10 chr4 5137894 5138206 -150491914 + MTD LTR MaLR 3 316 -103 1 624 1270 165 64 34 chr4 5138211 5138475 -150491645 + RLTR46 LTR ERVK 42 313 -7 1 624 767 58 10 0 chr4 5138485 5138588 -150491532 + MMERVK10C-int LTR ERVK 1 104 -7477 1 624 241 227 0 0 chr4 5138588 5138632 -150491488 + RLTR27 LTR ERVK 232 275 -34 1 624 348 23 0 0 chr4 5138632 5138675 -150491445 + MMERVK10C-int LTR ERVK 225 267 -7314 1 624 430 48 34 45 chr4 5138763 5138851 -150491269 + (GGAAA)n Simple_repeat Simple_repeat 3 89 0 1 624 474 78 0 0 chr4 5138868 5138932 -150491188 + RLTR10-int LTR ERVK 92 155 -6387 1 624 3458 50 5 0 chr4 5138908 5139345 -150490775 + RLTR10-int LTR ERVK 554 992 -995 1 624 506 307 27 15 chr4 5139485 5139760 -150490360 + IAPEY3-int LTR ERVK 822 1061 -5481 1 624 278 182 36 0 chr4 5139779 5139834 -150490286 + IAP-d-int LTR ERVK 447 503 -6039 1 624 1444 85 112 0 chr4 5139834 5140058 -150490062 + IAP-d-int LTR ERVK 5007 5255 -1287 1 624 4056 103 11 7 chr4 5140058 5140745 -150489375 + IAPEY3-int LTR ERVK 6965 7680 0 1 624 1269 160 62 40 chr4 5140754 5141027 -150489093 + RLTR46 LTR ERVK 42 320 0 1 624 524 222 65 0 chr4 5141027 5141131 -150488989 + MTD LTR MaLR 307 417 -2 1 624 278 78 0 0 chr4 5141376 5141435 -150488685 - L1_Mus1 LINE L1 0 6582 6522 1 624 24 0 0 0 chr4 5141438 5141462 -150488658 + AT_rich Low_complexity Low_complexity 1 24 0 1 624 275 398 65 32 chr4 5142136 5142383 -150487737 - L2b LINE L2 -3 3372 3118 1 624 2119 155 37 25 chr4 5142746 5143150 -150486970 + RLTR9E LTR ERVK 1 409 0 1 624 11074 126 19 17 chr4 5143379 5146458 -150483662 - Lx3C LINE L1 -2 6974 3895 1 624 402 306 9 0 chr4 5147704 5147812 -150482308 + PB1D10 SINE Alu 1 109 -8 1 624 14401 189 46 21 chr4 5148834 5149442 -150480678 + Lx5 LINE L1 882 1499 -4378 1 624 1011 126 0 0 chr4 5149442 5149601 -150480519 + (GAA)n Simple_repeat Simple_repeat 3 161 0 1 624 14401 173 48 24 chr4 5149601 5152620 -150477500 + Lx5 LINE L1 1500 4589 -1288 1 624 3117 148 16 21 chr4 5152623 5152769 -150477351 + Lx5 LINE L1 5302 5445 -432 1 624 180 0 0 0 chr4 5152769 5152789 -150477331 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 624 5836 200 45 14 chr4 5152789 5154314 -150475806 + Lx5 LINE L1 5446 7039 -11 1 624 187 321 0 19 chr4 5154469 5154523 -150475597 + L3 LINE CR1 3653 3705 -784 1 624 1090 73 0 0 chr4 5154878 5155015 -150475105 + B1_Mus2 SINE Alu 1 137 -10 1 624 216 0 0 0 chr4 5155015 5155039 -150475081 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 624 363 307 235 0 chr4 5155345 5155498 -150474622 + MLT1F LTR MaLR 182 370 -178 1 624 382 281 52 10 chr4 5155723 5155820 -150474300 - B1F SINE Alu -6 143 43 1 624 905 181 92 24 chr4 5155815 5155988 -150474132 - RMER6B LTR ERVK -72 389 158 1 624 3473 47 64 18 chr4 5155988 5156442 -150473678 + IAPLTR2_Mm LTR ERVK 1 475 0 1 624 905 137 156 39 chr4 5156442 5156583 -150473537 - RMER6B LTR ERVK -304 157 1 1 624 278 327 47 36 chr4 5156852 5157131 -150472989 - L1M4 LINE L1 -607 5577 5296 1 624 4429 54 8 0 chr4 5157175 5157772 -150472348 - L1Md_F2 LINE L1 -359 5524 4923 1 624 395 61 0 0 chr4 5157749 5157798 -150472322 + L1Md_F2 LINE L1 5538 5586 -297 1 624 8104 47 2 1 chr4 5157798 5158791 -150471329 + L1Md_F2 LINE L1 5587 6580 -2 1 624 409 23 33 54 chr4 5159067 5159159 -150470961 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 1 624 1123 62 21 0 chr4 5159159 5159304 -150470816 - B1_Mus1 SINE Alu 0 148 1 1 624 194 62 31 0 chr4 5160010 5160042 -150470078 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 624 276 306 40 24 chr4 5160316 5160440 -150469680 + RMER15 LTR ERVL 4 129 -446 2 624 723 309 85 25 chr4 5160472 5160754 -150469366 + RMER15 LTR ERVL 277 575 0 2 624 1780 226 37 5 chr4 5161054 5161432 -150468688 - MTD LTR MaLR 0 419 30 2 624 184 54 81 0 chr4 5161437 5161474 -150468646 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 624 1144 51 0 0 chr4 5161649 5161787 -150468333 + B1_Mm SINE Alu 1 138 -9 2 624 210 37 0 0 chr4 5161787 5161814 -150468306 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 624 743 349 99 35 chr4 5161884 5162490 -150467630 + RMER15-int LTR ERVL 1586 2230 -2769 2 624 340 285 123 7 chr4 5162613 5162751 -150467369 + Lx8 LINE L1 6252 6405 -1068 2 624 265 324 28 9 chr4 5162769 5162875 -150467245 + RMER15-int LTR ERVL 4416 4523 -476 2 624 554 285 19 37 chr4 5162880 5163095 -150467025 + Lx8 LINE L1 6638 6848 -625 2 624 392 275 193 64 chr4 5163354 5163603 -150466517 + RMER15 LTR ERVL 273 553 -22 2 624 244 340 0 19 chr4 5163610 5163715 -150466405 + Lx8 LINE L1 6828 6930 -543 2 624 494 245 223 8 chr4 5163715 5163962 -150466158 + Lx9 LINE L1 7140 7439 -205 2 624 375 23 0 0 chr4 5163963 5164007 -150466113 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 624 29 70 0 0 chr4 5164112 5164169 -150465951 + AT_rich Low_complexity Low_complexity 1 57 0 2 624 302 273 73 17 chr4 5164179 5164358 -150465762 + Charlie2b DNA MER1_type 2583 2771 -11 2 624 22 35 0 0 chr4 5164678 5164707 -150465413 + AT_rich Low_complexity Low_complexity 1 29 0 2 624 217 250 0 0 chr4 5165502 5165530 -150464590 + G-rich Low_complexity Low_complexity 1 28 0 2 624 191 36 0 35 chr4 5165530 5165559 -150464561 + (CGGGA)n Simple_repeat Simple_repeat 2 29 0 2 624 217 250 0 0 chr4 5165559 5165590 -150464530 + G-rich Low_complexity Low_complexity 29 59 0 2 624 1753 165 98 6 chr4 5165795 5166143 -150463977 + ORR1C2 LTR MaLR 5 384 0 2 624 347 324 0 63 chr4 5166786 5166802 -150463318 + ID_B1 SINE B4 68 215 -9 2 624 484 304 14 28 chr4 5166802 5166944 -150463176 + B1F SINE Alu 1 140 -9 2 624 195 129 0 0 chr4 5166953 5166984 -150463136 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 2 624 578 294 18 0 chr4 5167438 5167608 -150462512 - Lx9 LINE L1 -919 6725 6553 2 624 290 255 91 10 chr4 5167974 5168073 -150462047 - Lx9 LINE L1 -1713 5931 5825 2 624 431 298 111 35 chr4 5168077 5168377 -150461743 - ORR1E LTR MaLR 0 374 1 2 624 27 29 0 0 chr4 5168380 5168414 -150461706 + AT_rich Low_complexity Low_complexity 1 34 0 2 624 1192 240 48 34 chr4 5168441 5168795 -150461325 - Lx9 LINE L1 -115 5732 5374 2 624 4459 58 5 0 chr4 5169037 5169601 -150460519 - L1Md_F2 LINE L1 -2 6580 6014 2 624 25538 89 4 96 chr4 5169639 5176580 -150453540 - L1Md_F2 LINE L1 0 6582 317 2 624 219 36 0 0 chr4 5177061 5177089 -150453031 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 624 363 258 51 10 chr4 5178200 5178298 -150451822 + RSINE1 SINE B4 3 104 -61 2 624 236 261 11 21 chr4 5178373 5178467 -150451653 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 624 1219 283 14 43 chr4 5178560 5178907 -150451213 - MTD LTR MaLR -73 346 10 2 624 476 280 149 0 chr4 5179295 5179470 -150450650 + B3 SINE B2 1 201 -15 2 624 30 27 0 0 chr4 5179475 5179512 -150450608 + AT_rich Low_complexity Low_complexity 1 37 0 2 624 356 276 86 95 chr4 5180904 5181256 -150448864 + MLT1A1 LTR MaLR 11 407 -1 2 624 242 253 35 46 chr4 5183449 5183536 -150446584 - MTEb LTR MaLR -19 360 275 2 624 900 94 0 0 chr4 5183652 5183780 -150446340 + (GA)n Simple_repeat Simple_repeat 1 128 0 2 624 354 350 125 38 chr4 5185171 5185459 -150444661 + MLT1D LTR MaLR 71 383 -122 2 624 257 326 32 75 chr4 5185487 5185580 -150444540 + MER2 DNA MER2_type 4 92 -253 2 624 1649 249 42 17 chr4 5185654 5186063 -150444057 - MTD LTR MaLR 0 419 1 2 624 495 339 116 0 chr4 5186398 5186587 -150443533 - B4A SINE B4 -81 211 1 2 624 2046 112 3 83 chr4 5186621 5186982 -150443138 - IAPLTR1a_Mm LTR ERVK -5 332 1 2 624 20100 16 2 0 chr4 5186982 5189343 -150440777 - IAPEz-int LTR ERVK 0 6481 4117 2 624 446 66 0 0 chr4 5189335 5189396 -150440724 - IAPEz-int LTR ERVK -2896 3585 3525 2 624 871 81 24 0 chr4 5189396 5189519 -150440601 - IAPEz-int LTR ERVK -2770 4910 4785 2 624 1728 119 4 4 chr4 5189516 5189778 -150440342 - IAPEz-int LTR ERVK -5183 2497 2236 2 624 424 38 0 0 chr4 5189777 5189830 -150440290 - IAPEz-int LTR ERVK -5070 1411 1359 2 624 4107 46 31 31 chr4 5189862 5190468 -150439652 - IAPEz-int LTR ERVK -5890 591 3 2 624 2053 114 3 82 chr4 5190469 5190833 -150439287 - IAPLTR1a_Mm LTR ERVK -2 335 1 2 624 238 226 32 0 chr4 5190901 5190963 -150439157 + MLT1D LTR MaLR 440 503 -2 2 624 432 0 0 0 chr4 5191147 5191195 -150438925 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 624 2979 81 10 0 chr4 5192123 5192519 -150437601 + MTB LTR MaLR 1 400 0 2 624 333 265 12 35 chr4 5192519 5192599 -150437521 - B4A SINE B4 -6 286 209 2 624 602 291 98 50 chr4 5192607 5192925 -150437195 + Lx8 LINE L1 4925 5264 -616 2 624 1879 127 93 69 chr4 5192925 5193389 -150436731 + IAPLTR2_Mm LTR ERVK 1 475 0 2 624 602 291 98 50 chr4 5193389 5193447 -150436673 + Lx8 LINE L1 5265 5319 -561 2 624 1371 252 22 23 chr4 5193469 5193917 -150436203 + Lx8 LINE L1 5440 5920 -1553 2 624 687 57 0 0 chr4 5194156 5194244 -150435876 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 2 624 240 213 0 0 chr4 5194418 5194479 -150435641 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 624 3956 184 55 72 chr4 5194571 5195427 -150434693 + RMER13A LTR ERVK 2 842 -18 2 624 450 0 0 0 chr4 5195783 5195833 -150434287 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 624 2176 213 81 17 chr4 5196537 5197066 -150433054 + RLTR12A LTR ERVK 1 563 -5 2 624 320 354 95 17 chr4 5197074 5197370 -150432750 + L1M4 LINE L1 2129 2447 -3699 2 624 659 130 20 7 chr4 5197636 5197783 -150432337 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 2 624 458 285 100 6 chr4 5197888 5198068 -150432052 + MER2 DNA MER2_type 87 283 -62 2 624 23 0 0 0 chr4 5198403 5198426 -150431694 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 343 327 73 0 chr4 5198890 5199000 -150431120 + B1F SINE Alu 12 129 -20 2 624 6471 54 2 3 chr4 5199292 5200147 -150429973 - L1Md_F2 LINE L1 0 6582 5729 2 624 27 0 0 0 chr4 5200175 5200202 -150429918 + AT_rich Low_complexity Low_complexity 1 27 0 2 624 297 320 21 113 chr4 5200244 5200385 -150429735 + B4A SINE B4 127 254 -38 2 624 21 0 0 0 chr4 5201002 5201023 -150429097 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 365 409 7 0 chr4 5201143 5201285 -150428835 + MLT1A1 LTR MaLR 20 162 -246 2 624 313 334 20 4 chr4 5201294 5201416 -150428704 + B1F2 SINE Alu 1 126 -23 2 624 1239 196 55 48 chr4 5202680 5202970 -150427150 - MTC LTR MaLR -129 292 1 2 624 22 0 0 0 chr4 5204676 5204698 -150425422 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 22 80 0 0 chr4 5205193 5205243 -150424877 + AT_rich Low_complexity Low_complexity 1 50 0 2 624 1543 219 91 6 chr4 5205504 5205834 -150424286 - ORR1D1 LTR MaLR -8 366 9 2 624 500 196 189 37 chr4 5205868 5205979 -150424141 + L1_Mur3 LINE L1 4257 4398 -1482 2 624 668 23 12 0 chr4 5205979 5206065 -150424055 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 2 624 759 97 0 0 chr4 5206068 5206182 -150423938 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 624 297 0 0 0 chr4 5206182 5206214 -150423906 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 624 500 196 189 37 chr4 5206214 5206261 -150423859 + L1_Mur3 LINE L1 4399 4444 -1436 2 624 1204 208 8 0 chr4 5206262 5206507 -150423613 + Lx7 LINE L1 6746 6992 -704 2 624 3465 74 19 6 chr4 5206659 5207134 -150422986 - L1Md_F2 LINE L1 -8 6574 6094 2 624 2111 67 3 0 chr4 5207134 5207426 -150422694 + L1Md_F2 LINE L1 5802 6088 -494 2 624 1537 224 40 42 chr4 5208006 5208458 -150421662 + Lx7 LINE L1 7043 7493 -203 2 624 436 248 39 0 chr4 5208475 5208604 -150421516 + Lx7 LINE L1 7559 7692 -4 2 624 23 0 0 0 chr4 5208648 5208671 -150421449 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 592 250 105 7 chr4 5208672 5208825 -150421295 + MTD LTR MaLR 196 363 -56 2 624 412 297 46 2 chr4 5208830 5208974 -150421146 - ORR1D1-int LTR MaLR -46 1324 1192 2 624 385 109 0 0 chr4 5208974 5209038 -150421082 - Lx4A LINE L1 -1261 5797 5734 2 624 750 255 0 55 chr4 5209022 5209275 -150420845 - Lx7 LINE L1 -1593 6103 5865 2 624 2597 229 71 13 chr4 5209278 5209894 -150420226 - ORR1D1-int LTR MaLR -718 652 1 2 624 1164 55 7 0 chr4 5209921 5210067 -150420053 - B1_Mm SINE Alu 0 147 1 2 624 1133 200 202 7 chr4 5210067 5210374 -150419746 - ORR1D1 LTR MaLR -5 369 3 2 624 571 319 74 63 chr4 5211857 5212128 -150417992 + B4A SINE B4 6 279 -13 2 624 9243 85 25 15 chr4 5214441 5214917 -150415203 - Lx3_Mus LINE L1 -6 7003 6523 2 624 2848 41 9 0 chr4 5214917 5215259 -150414861 + IAPLTR4 LTR ERVK 1 345 0 2 624 9243 79 45 21 chr4 5215259 5216475 -150413645 - Lx3_Mus LINE L1 -487 6522 5265 2 624 297 0 0 0 chr4 5216475 5216508 -150413612 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 2 624 387 0 0 0 chr4 5216509 5216552 -150413568 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 624 1159 64 0 0 chr4 5216554 5216694 -150413426 - B1_Mm SINE Alu -6 141 2 2 624 4172 71 66 28 chr4 5216694 5216761 -150413359 - Lx3_Mus LINE L1 -622 5264 5205 2 624 2204 48 3 3 chr4 5216758 5217053 -150413067 + Lx3_Mus LINE L1 4915 5209 -677 2 624 248 191 87 14 chr4 5217160 5217229 -150412891 - RMER10A LTR ERVL -336 106 33 2 624 995 167 52 13 chr4 5218275 5218506 -150411614 + L1_Rod LINE L1 4597 4836 -1011 2 624 880 255 243 16 chr4 5219726 5220155 -150409965 - RLTR11A2 LTR ERVK 0 527 1 2 624 1194 256 21 80 chr4 5220704 5221043 -150409077 - ORR1D1 LTR MaLR -55 319 1 2 624 723 257 40 6 chr4 5221686 5221862 -150408258 - B3A SINE B2 0 198 17 2 624 7078 186 49 4 chr4 5224228 5225865 -150404255 + Lx5 LINE L1 5324 7036 -14 2 624 1765 142 24 24 chr4 5225865 5226161 -150403959 + L1_Mus4 LINE L1 6337 6632 -4 2 624 280 382 36 9 chr4 5226224 5226335 -150403785 - B4 SINE B4 -94 198 85 2 624 24 32 0 0 chr4 5226392 5226423 -150403697 + AT_rich Low_complexity Low_complexity 1 31 0 2 624 207 0 0 0 chr4 5228993 5229016 -150401104 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 624 559 286 33 57 chr4 5229607 5229811 -150400309 - RMER15 LTR ERVL 0 575 377 2 624 1967 198 15 56 chr4 5229811 5230272 -150399848 - RMER10A LTR ERVL 0 442 1 2 624 352 369 67 22 chr4 5230272 5230450 -150399670 - RMER15 LTR ERVL -196 379 194 2 624 869 166 18 41 chr4 5230462 5230632 -150399488 + URR1A DNA MER1_type 61 226 0 2 624 767 252 153 31 chr4 5230967 5231254 -150398866 + RLTR28B LTR ERVL 23 344 -137 2 624 187 222 12 12 chr4 5231361 5231443 -150398677 + GA-rich Low_complexity Low_complexity 1 82 0 2 624 337 287 29 10 chr4 5231939 5232041 -150398079 + MTE2a LTR MaLR 8 111 -268 2 624 515 240 108 0 chr4 5232655 5232784 -150397336 + MTE2a LTR MaLR 237 379 0 2 624 36976 37 2 7 chr4 5232829 5237987 -150392133 + L1Md_T LINE L1 462 5586 -297 2 624 8875 37 0 5 chr4 5237987 5238988 -150391132 + L1Md_T LINE L1 5587 6582 0 2 624 4227 242 62 13 chr4 5239930 5241446 -150388674 + RMER1A Other Other 1 1025 -5 2 9 953 295 79 15 chr4 5242844 5243109 -150387011 + ORR1D2 LTR MaLR 8 289 -81 3 625 1204 217 36 72 chr4 5243117 5243450 -150386670 - ORR1D1 LTR MaLR 0 374 54 3 625 207 0 0 0 chr4 5243505 5243528 -150386592 + (A)n Simple_repeat Simple_repeat 1 23 0 3 625 207 0 0 0 chr4 5243548 5243571 -150386549 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 625 425 162 0 13 chr4 5243573 5243648 -150386472 + ORR1D2 LTR MaLR 286 359 -11 3 625 183 156 0 0 chr4 5245117 5245149 -150384971 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 625 432 243 30 15 chr4 5245177 5245286 -150384834 - B4A SINE B4 -177 115 5 3 625 404 404 53 39 chr4 5245364 5245851 -150384269 - LTR40a LTR ERVL -18 501 8 3 625 3064 250 85 88 chr4 5246205 5246718 -150383402 - RMER12 LTR ERVK 0 1322 876 3 625 225 108 0 0 chr4 5246718 5246755 -150383365 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 625 3064 250 85 88 chr4 5246755 5247566 -150382554 - RMER12 LTR ERVK -447 875 1 3 625 227 274 101 17 chr4 5247732 5247851 -150382269 - L1M5 LINE L1 -349 5775 5647 3 625 2152 151 49 67 chr4 5248101 5248548 -150381572 + RMER10A LTR ERVL 4 442 0 3 625 22 56 0 0 chr4 5249778 5249814 -150380306 + AT_rich Low_complexity Low_complexity 1 36 0 3 625 233 319 49 78 chr4 5250092 5250106 -150380014 + ZP3AR Satellite Satellite 31 64 -148 3 625 251 70 93 0 chr4 5250106 5250149 -150379971 + ID4_ SINE ID 3 49 -34 3 625 233 319 49 78 chr4 5250149 5250160 -150379960 + ZP3AR Satellite Satellite 65 96 -116 3 625 459 35 0 0 chr4 5250160 5250217 -150379903 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 625 233 319 49 78 chr4 5250217 5250250 -150379870 + ZP3AR Satellite Satellite 97 129 -83 3 625 486 0 0 0 chr4 5250749 5250803 -150379317 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 3 625 744 340 55 29 chr4 5251997 5252382 -150377738 + MLT2B4 LTR ERVL 2 396 -160 3 625 548 280 96 17 chr4 5253701 5253849 -150376271 + B3A SINE B2 2 165 -33 3 625 789 93 0 0 chr4 5253849 5253978 -150376142 + (TC)n Simple_repeat Simple_repeat 1 129 0 3 625 548 280 96 17 chr4 5253978 5254007 -150376113 + B3A SINE B2 166 193 -5 3 625 811 151 6 6 chr4 5254076 5254236 -150375884 + GA-rich Low_complexity Low_complexity 3 162 0 3 625 523 228 25 16 chr4 5255473 5255600 -150374520 + B1F2 SINE Alu 10 137 -12 3 625 536 322 120 18 chr4 5256761 5257036 -150373084 + RMER15 LTR ERVL 273 575 0 3 625 674 324 71 29 chr4 5257036 5257344 -150372776 - MLT1A0 LTR MaLR -44 321 1 3 625 1227 238 48 80 chr4 5258647 5259062 -150371058 + RLTR20B3 LTR ERVK 21 422 -155 3 625 253 227 104 15 chr4 5259228 5259295 -150370825 - B3A SINE B2 -125 73 1 3 625 631 225 58 7 chr4 5259337 5259476 -150370644 - B1_Mur2 SINE Alu -1 148 3 3 625 3629 85 45 2 chr4 5260048 5260518 -150369602 - L1_Mus2 LINE L1 0 6566 6077 3 625 966 188 193 0 chr4 5261192 5261373 -150368747 + B3 SINE B2 1 216 0 3 625 239 325 84 36 chr4 5261540 5261706 -150368414 - MTEa LTR MaLR 0 379 206 3 625 330 251 322 29 chr4 5263776 5263967 -150366153 - MIR SINE MIR -1 267 14 3 625 1016 87 7 0 chr4 5264035 5264184 -150365936 + (TC)n Simple_repeat Simple_repeat 1 150 0 3 625 266 0 29 0 chr4 5264603 5264637 -150365483 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 625 782 343 74 0 chr4 5264989 5265260 -150364860 + B4A SINE B4 2 292 0 3 625 216 97 0 0 chr4 5265492 5265523 -150364597 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 625 3684 23 3 0 chr4 5266652 5267043 -150363077 + MTA_Mm LTR MaLR 1 392 -4 3 625 1722 69 0 4 chr4 5267047 5267281 -150362839 + MTA_Mm-int LTR MaLR 1 233 -865 3 625 1985 117 94 0 chr4 5267281 5267580 -150362540 - Lx2 LINE L1 -165 6832 6506 3 625 4851 178 66 11 chr4 5267580 5268434 -150361686 - RMER19B LTR ERVK 0 902 2 3 625 198 0 0 0 chr4 5269019 5269041 -150361079 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 625 2271 278 186 42 chr4 5269231 5269413 -150360707 - Lx5 LINE L1 -392 6658 6454 3 625 408 40 0 0 chr4 5269413 5269463 -150360657 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 625 2271 254 126 28 chr4 5269463 5270386 -150359734 - Lx5 LINE L1 -597 6453 5410 3 625 3551 269 59 80 chr4 5270410 5271067 -150359053 + ORR1C2-int LTR MaLR 1 604 -905 3 625 1295 114 23 0 chr4 5271067 5271242 -150358878 - B2_Mm2 SINE B2 -15 180 2 3 625 3551 269 59 80 chr4 5271242 5272115 -150358005 + ORR1C2-int LTR MaLR 605 1499 -10 3 625 1078 244 199 6 chr4 5272125 5272275 -150357845 + ORR1C2 LTR MaLR 1 171 -213 3 625 920 9 9 0 chr4 5272275 5272384 -150357736 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 625 1078 244 199 6 chr4 5272384 5272555 -150357565 + ORR1C2 LTR MaLR 172 383 -1 3 625 4993 174 14 37 chr4 5272834 5272969 -150357151 - RMER13B LTR ERVK 0 908 782 3 625 2709 91 73 0 chr4 5272969 5273352 -150356768 + IAPLTR2a LTR ERVK 1 411 0 3 625 4993 174 14 37 chr4 5273352 5274143 -150355977 - RMER13B LTR ERVK -127 781 3 3 625 1234 289 38 51 chr4 5275355 5275905 -150354215 + L1_Rod LINE L1 5273 5815 -32 3 625 304 263 0 13 chr4 5276064 5276141 -150353979 - PB1D10 SINE Alu -1 116 41 3 625 589 129 29 7 chr4 5276846 5276986 -150353134 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 3 625 1204 33 0 0 chr4 5277668 5277818 -150352302 - L1Md_A LINE L1 0 6582 6433 3 625 38737 33 2 7 chr4 5277822 5283628 -150346492 - L1Md_A LINE L1 -393 6189 416 3 625 496 364 128 26 chr4 5283654 5284108 -150346012 + MLT1E2 LTR MaLR 125 624 -3 3 625 1711 194 169 54 chr4 5284642 5284739 -150345381 - RLTR20B2 LTR ERVK 0 560 455 3 625 492 18 0 0 chr4 5284739 5284796 -150345324 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 625 465 19 0 0 chr4 5284797 5284851 -150345269 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 625 1711 194 169 54 chr4 5284851 5285253 -150344867 - RLTR20B2 LTR ERVK -106 454 3 3 625 260 53 26 0 chr4 5285819 5285857 -150344263 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 3 625 237 364 36 0 chr4 5286356 5286466 -150343654 - MER2B DNA MER2_type -48 288 175 3 625 270 235 0 0 chr4 5286543 5286624 -150343496 + CT-rich Low_complexity Low_complexity 2 82 0 3 625 243 125 0 0 chr4 5286626 5286666 -150343454 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 625 1554 244 41 6 chr4 5287586 5287928 -150342192 - Lx5 LINE L1 -3 7047 6694 3 625 1247 286 84 37 chr4 5289086 5289734 -150340386 - Lx9 LINE L1 -1654 5990 5279 3 625 884 263 80 125 chr4 5289830 5290455 -150339665 + L1_Mur3 LINE L1 4286 4882 -998 3 625 2269 210 88 59 chr4 5290459 5291117 -150339003 - RLTR40 LTR ERVK -39 778 102 3 625 30366 107 12 3 chr4 5291136 5296518 -150333602 - L1_Mus1 LINE L1 -3 6564 1131 3 625 34800 67 1 47 chr4 5296510 5302919 -150327201 - L1Md_F2 LINE L1 -2 6580 487 3 625 3946 147 51 9 chr4 5302916 5303601 -150326519 - L1Md_F LINE L1 -5494 1025 312 3 625 249 123 298 0 chr4 5303613 5303670 -150326450 - RLTR40 LTR ERVK -741 76 3 3 625 437 285 35 0 chr4 5303671 5303843 -150326277 + L1M2 LINE L1 4906 5083 -1060 3 625 978 129 7 0 chr4 5304030 5304177 -150325943 - B1_Mus1 SINE Alu 0 148 1 3 625 456 272 67 12 chr4 5304319 5304483 -150325637 - L1MA5 LINE L1 -24 6276 6104 3 625 476 357 85 8 chr4 5307407 5307653 -150322467 - MER2 DNA MER2_type -2 343 79 3 625 428 339 6 18 chr4 5308233 5308401 -150321719 + MIRb SINE MIR 98 263 -5 3 625 369 58 0 0 chr4 5308466 5308518 -150321602 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 625 398 253 123 90 chr4 5308668 5309009 -150321111 - MT2A LTR ERVL -2 599 92 3 625 1518 232 58 29 chr4 5309205 5309618 -150320502 - BGLII_B LTR ERVK -6 435 11 3 625 21 0 0 0 chr4 5309971 5309992 -150320128 + AT_rich Low_complexity Low_complexity 1 21 0 3 625 16879 154 24 12 chr4 5310292 5313133 -150316987 + MusHAL1 LINE L1 701 3572 -2314 3 625 836 45 18 0 chr4 5313133 5313245 -150316875 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 3 625 16879 169 23 15 chr4 5313245 5314279 -150315841 + MusHAL1 LINE L1 3573 4617 -1269 3 625 6812 113 21 1 chr4 5314279 5315446 -150314674 + L1_Mus3 LINE L1 5436 6626 -12 3 625 1359 169 10 131 chr4 5315443 5315831 -150314289 + MusHAL1 LINE L1 4587 4927 -959 3 625 29971 83 49 7 chr4 5315855 5320773 -150309347 + L1Md_F2 LINE L1 467 5585 -298 3 625 7632 62 2 2 chr4 5320774 5321761 -150308359 + L1Md_F2 LINE L1 5587 6573 -9 3 625 378 0 0 0 chr4 5321770 5321812 -150308308 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 625 6469 164 14 16 chr4 5321812 5322691 -150307429 + Lx LINE L1 4919 5785 -98 3 625 249 57 0 0 chr4 5322691 5322726 -150307394 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 625 6469 132 36 11 chr4 5322726 5323568 -150306552 + Lx LINE L1 5786 6652 -2 3 625 1114 58 0 0 chr4 5324373 5324510 -150305610 + B1_Mm SINE Alu 1 137 -10 3 625 666 37 0 0 chr4 5324510 5324591 -150305529 + (TAAAA)n Simple_repeat Simple_repeat 2 82 0 3 625 700 255 87 0 chr4 5325329 5325537 -150304583 + Lx8 LINE L1 6801 7026 -447 3 625 985 238 210 74 chr4 5325540 5326025 -150304095 - RMER15 LTR ERVL -3 572 22 3 625 417 348 16 37 chr4 5326173 5326361 -150303759 + Lx8 LINE L1 7088 7271 -202 3 625 396 0 0 0 chr4 5326420 5326464 -150303656 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 625 32 43 0 0 chr4 5326562 5326608 -150303512 + AT_rich Low_complexity Low_complexity 1 46 0 3 625 312 308 63 11 chr4 5326670 5326880 -150303240 + L1M4c LINE L1 2002 2173 -4677 3 625 222 79 30 60 chr4 5326898 5326965 -150303155 + (TTA)n Simple_repeat Simple_repeat 2 66 0 3 625 261 241 93 57 chr4 5327072 5327288 -150302832 + L1M4c LINE L1 2719 2945 -3905 3 625 630 111 0 0 chr4 5327606 5327696 -150302424 - MurERV4_19-int LTR ERVK -812 4968 4879 3 625 1269 169 22 9 chr4 5327696 5327923 -150302197 - RMER19A LTR ERVK -507 230 1 3 625 551 255 112 32 chr4 5327937 5328240 -150301880 - L1_Rod LINE L1 -179 5701 5349 3 625 1592 272 114 39 chr4 5328240 5328592 -150301528 - L1M2 LINE L1 -1933 4210 3836 3 625 293 0 27 0 chr4 5328592 5328629 -150301491 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 3 625 1592 272 114 39 chr4 5328629 5329298 -150300822 - L1M2 LINE L1 -2308 3835 3112 3 625 767 329 20 6 chr4 5329322 5329668 -150300452 - L1_Mur3 LINE L1 -4009 1871 1521 3 625 243 0 0 0 chr4 5329993 5330020 -150300100 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 625 492 255 109 7 chr4 5331800 5331938 -150298182 - B4A SINE B4 0 292 141 3 625 216 367 78 0 chr4 5331935 5332025 -150298095 - ID_B1 SINE B4 -127 97 1 3 625 502 150 12 0 chr4 5332104 5332184 -150297936 + MTC LTR MaLR 1 81 -340 3 625 670 232 7 47 chr4 5332190 5332339 -150297781 + B1_Mus1 SINE Alu 6 148 0 3 625 546 203 0 0 chr4 5332372 5332490 -150297630 + GA-rich Low_complexity Low_complexity 3 120 0 3 625 8374 81 21 29 chr4 5332501 5333737 -150296383 - L1_Mur1 LINE L1 -114 5772 4547 4 625 418 220 11 6 chr4 5333737 5333852 -150296268 + MTC LTR MaLR 262 377 -2 3 625 1693 193 60 0 chr4 5334067 5334420 -150295700 - Lx2A1 LINE L1 -5 7003 6630 4 625 243 317 9 71 chr4 5334506 5334618 -150295502 + MER5A1 DNA MER1_type 61 165 -1 4 625 354 45 0 0 chr4 5334855 5334899 -150295221 + (TAA)n Simple_repeat Simple_repeat 1 44 0 4 625 225 0 0 0 chr4 5335071 5335096 -150295024 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 625 391 165 24 0 chr4 5335096 5335181 -150294939 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 625 939 69 130 0 chr4 5335312 5335443 -150294677 - B1_Mus1 SINE Alu 0 148 1 4 625 198 0 0 0 chr4 5335453 5335475 -150294645 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 625 225 0 0 0 chr4 5336177 5336202 -150293918 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 625 712 225 46 36 chr4 5336463 5336657 -150293463 - MTD LTR MaLR -52 367 172 4 625 180 0 0 0 chr4 5336661 5336681 -150293439 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 625 225 24 71 0 chr4 5336855 5336897 -150293223 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 625 253 354 94 62 chr4 5337028 5337272 -150292848 + ORR1E LTR MaLR 1 252 -107 4 625 280 356 0 0 chr4 5338357 5338531 -150291589 + G-rich Low_complexity Low_complexity 6 179 0 4 625 288 178 31 62 chr4 5339739 5339835 -150290285 + L1MA5 LINE L1 6208 6300 0 4 625 34271 46 1 18 chr4 5340013 5345164 -150284956 + L1Md_F LINE L1 528 5586 -297 4 625 8513 28 2 0 chr4 5345164 5346157 -150283963 + L1Md_A LINE L1 5587 6581 -1 4 625 34271 236 52565 0 chr4 5346157 5346246 -150283874 + L1Md_F LINE L1 5587 5596 -287 4 625 342 0 0 0 chr4 5346367 5346405 -150283715 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 625 764 108 0 44 chr4 5346406 5346589 -150283531 + (CAGAGA)n Simple_repeat Simple_repeat 2 176 0 4 625 287 302 105 23 chr4 5346597 5346855 -150283265 + L1MEg LINE L1 927 1205 -4879 4 625 843 75 0 0 chr4 5346919 5347039 -150283081 + (TG)n Simple_repeat Simple_repeat 1 120 0 4 625 435 180 0 0 chr4 5347039 5347150 -150282970 + GA-rich Low_complexity Low_complexity 2 112 0 4 625 22 88 0 0 chr4 5347318 5347375 -150282745 + AT_rich Low_complexity Low_complexity 1 57 0 4 625 354 311 152 22 chr4 5349136 5349366 -150280754 - L1M5 LINE L1 -3169 2977 2718 4 625 438 20 0 0 chr4 5349369 5349420 -150280700 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 625 345 82 0 0 chr4 5349420 5349468 -150280652 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 625 260 175 158 0 chr4 5349510 5349567 -150280553 + PB1D10 SINE Alu 52 117 0 4 625 501 282 65 82 chr4 5350391 5350561 -150279559 + B4A SINE B4 125 291 -1 4 625 254 250 25 12 chr4 5350563 5350644 -150279476 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 625 186 43 0 0 chr4 5350677 5350700 -150279420 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 625 234 0 0 0 chr4 5350834 5350860 -150279260 + (A)n Simple_repeat Simple_repeat 1 26 0 4 625 2356 288 54 22 chr4 5351579 5352446 -150277674 + Lx8 LINE L1 6549 7443 -30 4 625 652 310 70 76 chr4 5352596 5352924 -150277196 - RLTR18B LTR ERVK 0 512 187 4 625 517 247 169 26 chr4 5352941 5353136 -150276984 - RLTR18B LTR ERVK -265 247 25 4 625 412 236 19 19 chr4 5353449 5353557 -150276563 - RMER1B Other Other -20 1046 939 4 625 2581 213 47 1 chr4 5353577 5354236 -150275884 - RMER1A Other Other -215 815 1 4 625 520 174 27 9 chr4 5354733 5354843 -150275277 - Lx9 LINE L1 -167 7477 7366 4 625 231 230 93 54 chr4 5354844 5354973 -150275147 + Lx9 LINE L1 7503 7636 -8 4 625 8163 66 22 1 chr4 5355669 5356809 -150273311 - L1Md_F2 LINE L1 -1434 4449 3286 4 625 7885 72 4 22 chr4 5356804 5357948 -150272172 + L1Md_F2 LINE L1 4463 5586 -297 4 625 7705 55 17 3 chr4 5357949 5358930 -150271190 + L1Md_F2 LINE L1 5588 6582 0 4 625 1947 50 0 0 chr4 5358935 5359177 -150270943 - L1_Mus1 LINE L1 -242 6325 6084 4 625 794 86 155 36 chr4 5359160 5359328 -150270792 + L1_Mus1 LINE L1 6380 6567 0 4 625 207 244 0 0 chr4 5360915 5360960 -150269160 + (TCG)n Simple_repeat Simple_repeat 2 46 0 4 625 651 318 93 43 chr4 5361413 5361694 -150268426 + MER31A LTR ERV1 24 331 -154 4 625 3533 166 73 5 chr4 5361694 5362361 -150267759 + RMER6D LTR ERVK 4 716 -4 4 625 651 318 93 43 chr4 5362361 5362424 -150267696 + MER31A LTR ERV1 332 385 -100 4 625 316 32 15 61 chr4 5362432 5362498 -150267622 + (TTTTTG)n Simple_repeat Simple_repeat 3 65 0 4 625 1191 55 0 7 chr4 5362499 5362647 -150267473 - B1_Mm SINE Alu 0 147 1 4 625 501 68 0 0 chr4 5362741 5362815 -150267305 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 625 235 352 151 23 chr4 5366080 5366298 -150263822 - ORR1E LTR MaLR -93 266 21 4 625 7173 98 25 2 chr4 5366469 5367537 -150262583 - L1_Mus1 LINE L1 -31 5852 4760 4 625 5653 62 15 0 chr4 5367537 5368250 -150261870 + L1_Mus1 LINE L1 5844 6567 0 4 625 190 116 0 44 chr4 5369350 5369395 -150260725 + GA-rich Low_complexity Low_complexity 2 44 0 4 625 921 62 0 78 chr4 5369860 5370053 -150260067 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 4 625 506 72 34 51 chr4 5370055 5370172 -150259948 + CT-rich Low_complexity Low_complexity 3 117 0 4 625 1245 51 0 28 chr4 5370174 5370355 -150259765 + (TTTCC)n Simple_repeat Simple_repeat 3 178 0 4 625 468 0 0 0 chr4 5370479 5370531 -150259589 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 625 1132 296 54 39 chr4 5370562 5371082 -150259038 - Lx9 LINE L1 -219 7425 6898 4 625 652 261 12 53 chr4 5371902 5372072 -150258048 + B3A SINE B2 1 163 -35 4 625 903 103 0 33 chr4 5372075 5372225 -150257895 - L1VL4 LINE L1 -5573 729 585 4 625 411 222 45 34 chr4 5372266 5372443 -150257677 - RMER17C LTR ERVK -136 274 96 4 625 3129 167 3 39 chr4 5372444 5373062 -150257058 - L1VL4 LINE L1 -5701 601 6 4 625 579 29 0 0 chr4 5373326 5373395 -150256725 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 626 420 169 0 0 chr4 5374309 5374386 -150255734 + GA-rich Low_complexity Low_complexity 3 79 0 4 626 940 72 0 45 chr4 5374506 5374638 -150255482 + B1_Mm SINE Alu 22 147 0 4 626 378 0 0 0 chr4 5374659 5374701 -150255419 + (TATG)n Simple_repeat Simple_repeat 2 43 0 4 626 300 191 26 110 chr4 5374710 5374835 -150255285 - B2_Mm2 SINE B2 -102 114 1 4 626 1208 119 11 0 chr4 5374850 5375027 -150255093 - B2_Mm1t SINE B2 -14 179 1 4 626 419 296 77 59 chr4 5375028 5375147 -150254973 + L1MA9 LINE L1 5911 6048 -264 4 626 1852 145 49 40 chr4 5375147 5375471 -150254649 - ORR1A2 LTR MaLR 0 327 1 4 626 419 296 77 59 chr4 5375471 5375742 -150254378 + L1MA9 LINE L1 6049 6308 -4 4 626 797 241 122 22 chr4 5376299 5376570 -150253550 - RMER20B LTR ERVK -214 413 116 4 626 198 0 0 0 chr4 5376945 5376967 -150253153 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 626 211 203 13 51 chr4 5377151 5377229 -150252891 + A-rich Low_complexity Low_complexity 6 80 0 4 626 1081 281 48 66 chr4 5377493 5377870 -150252250 - MTEb LTR MaLR -9 370 1 4 626 937 257 59 74 chr4 5378719 5379096 -150251024 + MTE2a LTR MaLR 37 403 -16 4 626 32 0 0 0 chr4 5380785 5380817 -150249303 + AT_rich Low_complexity Low_complexity 1 32 0 4 626 2426 181 59 29 chr4 5381579 5382090 -150248030 - RLTR11A2 LTR ERVK -1 526 1 4 626 1933 122 16 16 chr4 5382422 5382739 -150247381 - Lx3_Mus LINE L1 -8 7001 6685 4 626 2111 79 0 0 chr4 5382739 5383031 -150247089 + L1_Mus4 LINE L1 5851 6142 -494 4 626 1149 249 113 10 chr4 5383226 5383746 -150246374 - L1_Mur3 LINE L1 -1413 4467 3894 4 626 4904 167 26 21 chr4 5383745 5384795 -150245325 + Lx5 LINE L1 3726 4780 -1097 4 626 2150 176 148 14 chr4 5384792 5385260 -150244860 + Lx5 LINE L1 5635 6177 -873 4 626 2913 48 65 0 chr4 5385260 5385632 -150244488 + MTA_Mm LTR MaLR 1 396 0 4 626 2150 176 148 14 chr4 5385632 5385717 -150244403 + Lx5 LINE L1 6178 6262 -788 4 626 2056 231 5 2 chr4 5385714 5386143 -150243977 + Lx5 LINE L1 6441 6870 -180 4 626 4271 141 57 8 chr4 5386160 5386317 -150243803 + RLTR22_Mur LTR ERVK 1 154 -1694 4 626 450 0 0 0 chr4 5386317 5386367 -150243753 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 626 4271 141 57 8 chr4 5386367 5386976 -150243144 + RLTR22_Mur LTR ERVK 155 804 -1044 4 626 1295 198 4 26 chr4 5387167 5387432 -150242688 + RLTR22_Mur LTR ERVK 1590 1848 0 4 626 503 284 31 25 chr4 5387433 5387592 -150242528 + Lx5 LINE L1 6886 7045 -5 4 626 626 226 112 13 chr4 5387600 5387824 -150242296 - L1_Mur3 LINE L1 -1977 3903 3658 4 626 614 214 30 0 chr4 5387833 5387964 -150242156 - Lx5 LINE L1 -8 7042 6908 4 626 3218 36 3 15 chr4 5387964 5388354 -150241766 - IAPEY_LTR LTR ERVK 0 385 1 4 626 20837 44 3 6 chr4 5388354 5391073 -150239047 - IAPEy-int LTR ERVK 0 7513 4804 4 626 6680 104 8 12 chr4 5391073 5392136 -150237984 - IAPEy-int LTR ERVK -6455 1058 1 4 626 3261 36 3 3 chr4 5392136 5392521 -150237599 - IAPEY_LTR LTR ERVK 0 385 1 4 626 1828 224 31 0 chr4 5392544 5392927 -150237193 - Lx5 LINE L1 -175 6875 6481 4 626 21 0 0 0 chr4 5393351 5393372 -150236748 + AT_rich Low_complexity Low_complexity 1 21 0 4 626 5987 237 42 15 chr4 5393781 5394093 -150236027 - Lx6 LINE L1 -10 7450 7135 4 626 1011 109 0 0 chr4 5394093 5394231 -150235889 + B1_Mus1 SINE Alu 5 142 -6 4 626 495 0 0 0 chr4 5394233 5394288 -150235832 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 626 5987 237 42 15 chr4 5394288 5395408 -150234712 - Lx6 LINE L1 -326 7134 5976 4 626 5628 161 28 11 chr4 5395814 5396799 -150233321 + Lx4A LINE L1 6054 7055 -3 4 626 724 315 114 4 chr4 5397150 5397421 -150232699 + MER2 DNA MER2_type 8 308 -37 4 626 345 102 0 0 chr4 5397590 5397649 -150232471 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 4 626 263 273 101 72 chr4 5398466 5398604 -150231516 - MLT1A1 LTR MaLR -266 142 1 4 626 247 349 55 9 chr4 5398667 5398777 -150231343 - MLT1L LTR MaLR -345 265 151 4 626 978 160 22 16 chr4 5399910 5400094 -150230026 - B2_Mm2 SINE B2 -9 186 2 4 626 441 0 0 0 chr4 5400733 5400782 -150229338 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 626 426 263 57 34 chr4 5401229 5401406 -150228714 + MLT1B LTR MaLR 29 209 -181 4 626 246 188 42 0 chr4 5401436 5401484 -150228636 + MLT1B LTR MaLR 334 383 -7 4 626 303 309 61 35 chr4 5401489 5401603 -150228517 + MLT1B-int LTR MaLR 1 117 -1372 4 626 521 183 67 9 chr4 5401616 5401721 -150228399 - Lx6 LINE L1 -424 7036 6926 4 626 368 277 18 8 chr4 5401760 5401893 -150228227 + MLT1B-int LTR MaLR 110 360 -1011 4 626 497 222 39 129 chr4 5401983 5402006 -150228114 + B4 SINE B4 77 217 -75 4 626 957 91 0 0 chr4 5402006 5402138 -150227982 + B1_Mus1 SINE Alu 8 139 -9 4 626 270 0 0 0 chr4 5402138 5402168 -150227952 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 626 287 343 64 50 chr4 5402198 5402339 -150227781 + MLT1B-int LTR MaLR 577 719 -652 4 626 323 350 21 7 chr4 5402410 5402551 -150227569 - L1MCa LINE L1 -4752 1756 1614 4 626 559 320 131 6 chr4 5402704 5403025 -150227095 + MLT1B-int LTR MaLR 1369 1729 -6 4 626 727 296 59 35 chr4 5403027 5403317 -150226803 + MLT1B LTR MaLR 3 299 -91 4 626 242 223 32 11 chr4 5403317 5403412 -150226708 + T-rich Low_complexity Low_complexity 4 100 0 4 626 230 0 0 32 chr4 5403420 5403451 -150226669 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 626 427 237 0 31 chr4 5403456 5403552 -150226568 - B1_Mur3 SINE Alu -5 144 52 4 626 470 255 122 20 chr4 5404353 5404549 -150225571 - B3 SINE B2 0 216 1 5 626 3061 186 3 28 chr4 5404839 5405520 -150224600 - L1_Mur3 LINE L1 -1489 4391 3728 5 626 3774 123 48 101 chr4 5405877 5406670 -150223450 + RMER17A LTR ERVK 1 751 0 5 626 303 307 113 12 chr4 5406810 5407225 -150222895 - L1ME2 LINE L1 -61 6103 5647 5 626 311 350 121 19 chr4 5407256 5407521 -150222599 - L1MC LINE L1 -1126 5020 4729 5 626 366 107 0 0 chr4 5407563 5407619 -150222501 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 5 626 867 260 63 13 chr4 5407651 5407966 -150222154 + Lx8 LINE L1 7141 7471 -2 5 626 351 288 102 0 chr4 5407986 5408104 -150222016 + LTR40b LTR ERVL 54 183 -279 5 626 292 284 69 11 chr4 5408381 5408654 -150221466 - L1ME2 LINE L1 -2054 4092 3806 5 626 1239 261 52 16 chr4 5408715 5409096 -150221024 + L1_Rod LINE L1 91 485 -6687 5 626 904 225 11 6 chr4 5409465 5409648 -150220472 - B2_Mm2 SINE B2 -10 185 2 5 626 496 309 65 48 chr4 5409913 5410205 -150219915 - L1MB4 LINE L1 -1531 5216 4920 5 626 342 0 0 0 chr4 5410454 5410492 -150219628 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 626 2228 154 64 15 chr4 5410562 5410951 -150219169 + MTC LTR MaLR 1 408 -13 5 626 3099 207 17 70 chr4 5410951 5411958 -150218162 + MTC-int LTR MaLR 1 955 -143 5 626 898 233 72 61 chr4 5411961 5412370 -150217750 + Lx2B LINE L1 6572 6939 -61 5 626 804 186 78 43 chr4 5412377 5412607 -150217513 + MTC-int LTR MaLR 1021 1258 0 5 626 261 186 346 19 chr4 5412609 5412713 -150217407 + MTC LTR MaLR 3 140 -267 5 626 369 140 0 0 chr4 5412725 5412782 -150217338 + MTC-int LTR MaLR 5 61 -1197 5 626 235 306 74 11 chr4 5413082 5413257 -150216863 - L1MB4 LINE L1 -6394 213 28 5 626 360 148 0 0 chr4 5413651 5413712 -150216408 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 626 5561 156 18 6 chr4 5413867 5414753 -150215367 - RMER19B LTR ERVK -5 897 1 5 626 528 341 20 65 chr4 5414753 5415044 -150215076 - MLT1A0 LTR MaLR -66 299 22 5 626 3121 52 29 0 chr4 5416193 5416578 -150213542 - MTA_Mm LTR MaLR 0 396 1 5 626 3514 75 21 2 chr4 5417066 5417533 -150212587 - L1_Mus1 LINE L1 0 6567 6092 5 626 1566 47 14 0 chr4 5417533 5417744 -150212376 + L1_Mus2 LINE L1 5739 5952 -614 5 626 896 41 195 0 chr4 5417947 5418070 -150212050 + B1_Mm SINE Alu 1 147 0 5 626 1055 241 132 39 chr4 5418299 5418631 -150211489 - ORR1D2 LTR MaLR -4 366 4 5 626 1514 143 72 72 chr4 5418655 5418948 -150211172 - ORR1A4 LTR MaLR -36 293 1 5 626 585 28 0 0 chr4 5419056 5419127 -150210993 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 626 514 357 43 13 chr4 5419220 5419450 -150210670 - ORR1E LTR MaLR -120 239 3 5 626 767 204 6 58 chr4 5419612 5419784 -150210336 + ORR1C1 LTR MaLR 1 163 -215 5 626 606 14 0 0 chr4 5419784 5419855 -150210265 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 626 576 124 0 0 chr4 5419855 5419959 -150210161 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 626 229 192 40 20 chr4 5419977 5420078 -150210042 + CT-rich Low_complexity Low_complexity 1 103 0 5 626 180 111 0 0 chr4 5420665 5420692 -150209428 + (GAA)n Simple_repeat Simple_repeat 2 28 0 5 626 732 262 24 34 chr4 5422413 5422622 -150207498 + B3 SINE B2 3 209 -7 5 626 230 299 51 25 chr4 5422746 5422825 -150207295 - MLT1C LTR MaLR -245 222 142 5 626 5862 126 35 2 chr4 5423098 5424020 -150206100 + RMER17B LTR ERVK 1 952 -6 5 626 255 105 53 0 chr4 5424953 5425010 -150205110 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 626 1328 85 68 0 chr4 5425683 5425918 -150204202 + MYSERV16_I-int LTR ERVK 1136 1386 -940 5 626 1890 148 31 3 chr4 5425929 5426289 -150203831 + MYSERV16_I-int LTR ERVK 1781 2150 -176 5 626 198 0 0 0 chr4 5426801 5426823 -150203297 + (A)n Simple_repeat Simple_repeat 1 22 0 5 626 633 232 7 34 chr4 5427260 5427407 -150202713 + B1_Mus1 SINE Alu 6 148 0 5 626 1294 165 99 68 chr4 5427549 5428111 -150202009 + RMER6C LTR ERVK 1 683 -7 5 626 2056 221 64 11 chr4 5428384 5428850 -150201270 + RLTR31_Mm LTR ERVK 1 491 -70 5 626 1360 57 0 6 chr4 5428941 5429119 -150201001 - L1_Mus1 LINE L1 0 6567 6391 5 626 2151 179 70 0 chr4 5429808 5430311 -150199809 - RMER4B LTR ERVK 0 585 18 5 626 256 340 64 45 chr4 5430400 5430557 -150199563 + MLT1J LTR MaLR 324 483 -29 5 626 2008 172 35 5 chr4 5430975 5431348 -150198772 + MTC LTR MaLR 1 384 -37 5 626 272 146 21 0 chr4 5431779 5431827 -150198293 + MTC LTR MaLR 371 419 0 5 626 1055 269 51 114 chr4 5431891 5431973 -150198147 + MTD LTR MaLR 13 83 -338 5 626 1273 34 0 0 chr4 5431973 5432119 -150198001 + B1_Mm SINE Alu 1 146 -1 5 626 1220 269 51 114 chr4 5432119 5432464 -150197656 + MTD LTR MaLR 84 413 -8 5 626 212 175 0 24 chr4 5432558 5432599 -150197521 + CT-rich Low_complexity Low_complexity 2 41 0 5 626 13188 114 21 48 chr4 5432675 5436156 -150193964 + Lx3C LINE L1 3594 6974 -2 5 626 214 158 0 0 chr4 5438398 5438436 -150191684 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 626 195 42 0 0 chr4 5439650 5439674 -150190446 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 5 626 1144 230 143 34 chr4 5439737 5440115 -150190005 + MTD LTR MaLR 1 419 0 5 626 280 236 0 0 chr4 5440126 5440181 -150189939 - ID4 SINE ID -20 63 9 5 626 405 0 0 0 chr4 5440316 5440361 -150189759 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 626 3439 146 31 17 chr4 5440589 5441237 -150188883 - L1_Mur2 LINE L1 -799 5078 4422 5 626 2012 165 33 0 chr4 5441233 5441632 -150188488 + L1_Mur2 LINE L1 5055 5466 -411 5 626 643 262 145 36 chr4 5441663 5441995 -150188125 - L1M3 LINE L1 -515 5668 5301 5 626 838 272 174 10 chr4 5441995 5442381 -150187739 + MER97c DNA MER1_type? 226 674 -416 5 626 4111 159 66 22 chr4 5442381 5443245 -150186875 - RLTR13D6 LTR ERVK 0 902 1 5 626 193 259 56 0 chr4 5444075 5444129 -150185991 - L3 LINE CR1 -2264 2225 2169 5 626 646 279 131 45 chr4 5444774 5445111 -150185009 - Lx8 LINE L1 -37 7436 7071 5 626 359 322 75 37 chr4 5445257 5445556 -150184564 - L1M5 LINE L1 -730 5443 5135 5 626 299 314 57 0 chr4 5445603 5445708 -150184412 + ORR1E LTR MaLR 1 111 -248 5 626 518 269 216 61 chr4 5445744 5446155 -150183965 - RMER20A LTR ERVK 0 516 42 5 626 221 289 58 13 chr4 5446997 5447118 -150183002 + MIR SINE MIR 112 244 -24 5 626 246 381 64 71 chr4 5447219 5447292 -150182828 + MER2B DNA MER2_type 2 79 -257 5 626 889 238 14 41 chr4 5447292 5447511 -150182609 + B3 SINE B2 2 214 -2 5 626 246 381 64 71 chr4 5447511 5447703 -150182417 + MER2B DNA MER2_type 80 265 -71 5 626 210 320 232 0 chr4 5447760 5447885 -150182235 - MIR SINE MIR -38 224 71 5 626 203 268 81 40 chr4 5448142 5448216 -150181904 - MIRb SINE MIR -89 179 103 5 626 31 26 0 0 chr4 5448408 5448446 -150181674 + AT_rich Low_complexity Low_complexity 1 38 0 5 626 732 333 25 21 chr4 5448897 5449136 -150180984 - ORR1D2 LTR MaLR 0 370 131 5 626 402 247 10 0 chr4 5449858 5449955 -150180165 - ORR1D2 LTR MaLR -276 98 1 5 626 23 33 0 0 chr4 5451417 5451447 -150178673 + AT_rich Low_complexity Low_complexity 1 30 0 5 626 568 271 35 0 chr4 5451888 5452032 -150178088 + B1_Mur1 SINE Alu 1 149 0 5 626 194 0 0 37 chr4 5452034 5452061 -150178059 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 5 626 24 0 0 0 chr4 5452383 5452407 -150177713 + AT_rich Low_complexity Low_complexity 1 24 0 5 626 1625 92 16 12 chr4 5452409 5452661 -150177459 - Lx3B LINE L1 -378 6595 6343 5 626 211 80 19 74 chr4 5452661 5452715 -150177405 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 626 4527 124 11 11 chr4 5452717 5453568 -150176552 - Lx3B LINE L1 -625 6348 5502 5 626 1557 125 163 0 chr4 5453551 5453892 -150176228 + Lx3B LINE L1 6575 6971 -2 5 626 2011 155 20 67 chr4 5453973 5454306 -150175814 + ORR1A4 LTR MaLR 1 316 -54 5 626 980 108 32 0 chr4 5454306 5454463 -150175657 + L1_Mus3 LINE L1 6473 6634 -4 5 626 2011 133 15 47 chr4 5454463 5454523 -150175597 + ORR1A4 LTR MaLR 271 329 0 5 626 6846 120 26 9 chr4 5454592 5455643 -150174477 - Lx2 LINE L1 0 6997 5929 5 626 289 309 144 30 chr4 5456489 5456656 -150173464 + LTR81A LTR ERV1? 35 220 -1130 5 626 209 132 26 0 chr4 5458200 5458238 -150171882 + (CACTA)n Simple_repeat Simple_repeat 1 39 0 5 626 825 333 65 25 chr4 5458388 5458791 -150171329 - MER21B LTR ERV1 -132 731 313 5 626 265 288 155 21 chr4 5459788 5459930 -150170190 + LTR81B LTR ERV1? 38 198 -1195 5 626 315 203 47 0 chr4 5460369 5460433 -150169687 + PB1D9 SINE Alu 53 119 -1 5 626 471 408 54 19 chr4 5460491 5460751 -150169369 + B4 SINE B4 11 279 -13 5 626 432 0 0 0 chr4 5460762 5460810 -150169310 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 626 865 89 0 0 chr4 5461543 5461666 -150168454 - Lx2A LINE L1 -207 6801 6679 5 626 422 109 0 0 chr4 5461664 5461728 -150168392 + L1_Mur2 LINE L1 4341 4404 -1473 5 626 500 63 0 17 chr4 5461756 5461835 -150168285 + B1_Mur4 SINE Alu 39 141 -9 5 626 528 16 0 0 chr4 5461847 5461908 -150168212 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 5 626 428 261 104 129 chr4 5462125 5462288 -150167832 + B3 SINE B2 40 216 0 5 626 529 212 25 42 chr4 5462864 5462982 -150167138 - B1_Mur1 SINE Alu -24 125 10 5 626 355 286 8 70 chr4 5462875 5463003 -150167117 - MT2B LTR ERVL -328 273 154 5 626 926 253 146 26 chr4 5463984 5464361 -150165759 - Lx7 LINE L1 -341 7355 6934 5 626 277 279 29 0 chr4 5464828 5464896 -150165224 + BC1_Mm scRNA scRNA 18 87 -65 5 626 701 309 121 28 chr4 5464892 5465215 -150164905 + MLT1B LTR MaLR 27 379 -11 5 626 351 269 74 21 chr4 5465515 5465610 -150164510 + MLT1B LTR MaLR 406 505 0 5 626 214 284 29 43 chr4 5465676 5465746 -150164374 - MIRc SINE MIR -101 167 99 5 626 258 259 57 7 chr4 5466576 5466675 -150163445 + MLT1B LTR MaLR 414 598 -29 5 626 1967 134 51 93 chr4 5466699 5467109 -150163011 - RLTR9C LTR ERVK 0 393 1 5 626 509 93 0 0 chr4 5467110 5467185 -150162935 - ETnERV2-int LTR ERVK -1 7405 7331 5 626 1263 256 76 88 chr4 5467331 5467754 -150162366 + MTD LTR MaLR 2 419 0 5 626 807 130 71 28 chr4 5468158 5468305 -150161815 + RMER17B LTR ERVK 312 456 -502 5 626 462 18 0 0 chr4 5468305 5468360 -150161760 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 6 626 807 130 71 28 chr4 5468360 5468394 -150161726 + RMER17B LTR ERVK 457 501 -457 5 626 14132 86 8 11 chr4 5468525 5471282 -150158838 + L1Md_A LINE L1 441 3187 -2696 6 626 768 143 40 0 chr4 5471282 5471408 -150158712 - MTC LTR MaLR -290 131 1 6 626 300 28 0 0 chr4 5472029 5472065 -150158055 + U2 snRNA snRNA 1 36 -152 6 626 454 299 137 46 chr4 5472062 5472237 -150157883 + ID_B1 SINE B4 6 196 -28 6 626 506 270 143 4 chr4 5473819 5474098 -150156022 - L1MC3 LINE L1 -1 7784 7467 6 626 322 200 213 0 chr4 5474153 5474228 -150155892 - B1F SINE Alu -58 91 1 6 626 354 287 142 9 chr4 5474279 5474603 -150155517 - L1MC3 LINE L1 -494 7291 6925 6 626 436 276 147 4 chr4 5474858 5475116 -150155004 - L1MC3 LINE L1 -1185 6600 6306 6 626 380 161 0 12 chr4 5475808 5475890 -150154230 + CT-rich Low_complexity Low_complexity 3 83 0 6 626 643 332 52 37 chr4 5476512 5476784 -150153336 - MER2 DNA MER2_type -66 279 4 6 626 214 296 0 0 chr4 5477278 5477332 -150152788 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 626 339 317 60 24 chr4 5477351 5477519 -150152601 - B2_Mm2 SINE B2 -21 174 1 6 626 514 269 13 15 chr4 5477819 5477973 -150152147 + MER5A DNA MER1_type 35 178 0 6 626 344 181 12 0 chr4 5479078 5479161 -150150959 + CT-rich Low_complexity Low_complexity 1 84 0 6 626 549 0 0 0 chr4 5480309 5480370 -150149750 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 626 322 323 128 72 chr4 5481032 5481322 -150148798 - MTEa LTR MaLR -18 361 56 6 626 204 125 0 0 chr4 5482751 5482783 -150147337 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 6 626 711 284 5 64 chr4 5483441 5483629 -150146491 + B3A SINE B2 2 178 -20 6 626 360 282 101 86 chr4 5483723 5484027 -150146093 + L1MCa LINE L1 637 948 -5097 6 626 279 104 0 0 chr4 5484027 5484075 -150146045 + (CATA)n Simple_repeat Simple_repeat 2 49 0 6 626 366 286 101 68 chr4 5484075 5484371 -150145749 + L1MCa LINE L1 949 1349 -5402 6 626 545 305 6 44 chr4 5484443 5484601 -150145519 + RSINE1 SINE B4 4 155 -10 6 626 1029 192 28 42 chr4 5484640 5484857 -150145263 + B3 SINE B2 2 215 -1 6 626 454 262 34 19 chr4 5484883 5485089 -150145031 + L1MCa LINE L1 1419 1627 -5124 6 626 280 268 28 0 chr4 5488053 5488124 -150141996 + ID4 SINE ID 2 74 -9 6 626 2549 302 83 32 chr4 5488194 5489661 -150140459 + Lx8 LINE L1 5710 7286 -187 6 626 276 200 0 0 chr4 5489671 5489731 -150140389 + GA-rich Low_complexity Low_complexity 1 60 0 6 626 791 320 71 24 chr4 5489981 5490391 -150139729 + Charlie1b DNA MER1_type 2 430 -93 6 626 257 205 35 24 chr4 5490780 5490865 -150139255 + (CAAA)n Simple_repeat Simple_repeat 2 87 0 6 626 385 293 182 6 chr4 5491047 5491458 -150138662 + L1_Mur3 LINE L1 5114 5638 -542 6 626 335 292 0 72 chr4 5492015 5492138 -150137982 - B1F2 SINE Alu -33 116 1 6 626 380 220 55 9 chr4 5492140 5492250 -150137870 + L1MA4 LINE L1 5791 5905 -395 6 626 646 306 51 66 chr4 5492743 5493138 -150136982 - LTR37A LTR ERV1 -24 402 14 6 626 425 196 87 26 chr4 5493151 5493266 -150136854 - MTD-int LTR MaLR -1133 125 4 6 626 1703 253 48 13 chr4 5493269 5493662 -150136458 - MTD LTR MaLR 0 419 13 6 626 256 302 88 52 chr4 5493771 5494001 -150136119 + L1MC4a LINE L1 7663 7882 0 6 626 618 295 33 28 chr4 5494005 5494218 -150135902 + B3 SINE B2 3 216 0 6 626 25 51 0 0 chr4 5494228 5494267 -150135853 + AT_rich Low_complexity Low_complexity 1 39 0 6 626 30 27 0 0 chr4 5494302 5494339 -150135781 + AT_rich Low_complexity Low_complexity 1 37 0 6 626 305 343 48 0 chr4 5496070 5496175 -150133945 + PB1D10 SINE Alu 2 111 -6 6 626 310 354 87 10 chr4 5496188 5496396 -150133724 + MIRb SINE MIR 41 264 -4 6 626 670 265 93 108 chr4 5496412 5496746 -150133374 - MLT1A0 LTR MaLR -18 347 19 6 626 423 0 0 0 chr4 5498587 5498634 -150131486 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 6 626 2687 128 59 52 chr4 5499408 5500000 -150130120 + L1VL4 LINE L1 354 949 -5353 6 626 5964 101 23 6 chr4 5500000 5500991 -150129129 + MusHAL1 LINE L1 103 1110 -1602 1 626 8714 215 42 53 chr4 5500990 5503964 -150126156 + L1_Mm LINE L1 2935 5874 -9 2 78 31701 68 7 16 chr4 5503968 5509091 -150121029 + L1Md_F2 LINE L1 511 5586 -297 3 627 8067 48 1 4 chr4 5509091 5510078 -150120042 + L1Md_F2 LINE L1 5587 6570 -12 3 627 4709 122 45 47 chr4 5510101 5510892 -150119228 + Lx LINE L1 5862 6651 -3 4 627 189 0 0 0 chr4 5510896 5510917 -150119203 + (GGGGA)n Simple_repeat Simple_repeat 5 25 0 5 627 180 97 0 0 chr4 5510916 5510947 -150119173 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 6 627 212 248 8 25 chr4 5512162 5512282 -150117838 + GA-rich Low_complexity Low_complexity 2 119 0 7 627 1160 251 42 78 chr4 5512487 5512846 -150117274 + ORR1E LTR MaLR 2 347 -12 8 627 540 257 0 0 chr4 5512934 5513035 -150117085 + B1_Mur2 SINE Alu 1 101 -48 9 627 513 0 0 0 chr4 5513274 5513331 -150116789 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 627 231 36 0 0 chr4 5513331 5513358 -150116762 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 627 189 333 0 0 chr4 5514793 5514856 -150115264 - MIR SINE MIR -134 128 66 1 627 236 180 32 32 chr4 5515191 5515254 -150114866 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1 627 291 54 0 0 chr4 5515254 5515291 -150114829 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 627 2628 140 4 26 chr4 5515301 5515764 -150114356 + RLTR11B LTR ERVK 1 453 0 1 627 462 296 145 97 chr4 5515879 5516364 -150113756 - MLT1E3 LTR MaLR -52 453 1 1 627 248 137 0 19 chr4 5517047 5517099 -150113021 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 627 301 240 13 26 chr4 5517850 5517927 -150112193 - L3b LINE CR1 -246 236 161 1 627 367 259 0 0 chr4 5518047 5518155 -150111965 + L1MA5 LINE L1 6023 6130 -170 1 627 913 224 25 35 chr4 5518180 5518383 -150111737 + B3 SINE B2 6 206 -10 2 627 227 195 0 0 chr4 5518406 5518447 -150111673 + L1MA5 LINE L1 6178 6218 -82 1 627 459 0 0 0 chr4 5518452 5518503 -150111617 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 627 463 295 91 48 chr4 5518567 5518984 -150111136 - HAL1 LINE L1 -686 1821 1387 2 627 289 139 0 0 chr4 5519343 5519386 -150110734 - RSINE1 SINE B4 -120 45 3 2 627 250 269 87 27 chr4 5519510 5519659 -150110461 - L1MA5 LINE L1 -5 6295 6138 2 627 1016 113 28 0 chr4 5520109 5520251 -150109869 - B1_Mus1 SINE Alu -1 147 2 2 627 832 275 80 85 chr4 5520445 5520822 -150109298 + MTE2b LTR MaLR 1 375 -4 2 627 3510 55 35 11 chr4 5520823 5520932 -150109188 - MT2C_Mm LTR ERVL 0 475 364 2 627 4925 51 2 0 chr4 5520932 5521518 -150108602 + LTRIS_Mus LTR ERV1 1 587 0 2 627 3510 55 35 11 chr4 5521518 5521870 -150108250 - MT2C_Mm LTR ERVL -112 363 3 2 627 645 333 36 31 chr4 5522107 5522330 -150107790 + MER58A DNA MER1_type 1 224 0 2 627 1051 315 3 38 chr4 5522730 5522942 -150107178 - MTE2b LTR MaLR -13 366 165 3 627 375 23 0 0 chr4 5522942 5522986 -150107134 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 627 1051 354 21 48 chr4 5522986 5523180 -150106940 - MTE2b LTR MaLR -226 193 8 3 627 385 299 108 54 chr4 5523769 5524122 -150105998 + RMER5 LTR ERV1 39 410 -124 3 627 205 382 116 14 chr4 5524557 5524703 -150105417 - MIRb SINE MIR -106 162 2 3 627 766 312 113 51 chr4 5524876 5525584 -150104536 + Lx8 LINE L1 6716 7467 -6 3 627 372 22 0 0 chr4 5525666 5525711 -150104409 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 627 405 0 0 0 chr4 5525711 5525755 -150104365 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 627 378 296 121 11 chr4 5526215 5526506 -150103614 + L1M5 LINE L1 5407 5725 -448 3 627 271 167 152 0 chr4 5526538 5526604 -150103516 + L1M5 LINE L1 5783 5858 -586 3 627 260 294 32 42 chr4 5527129 5527357 -150102763 + CT-rich Low_complexity Low_complexity 1 225 0 3 627 192 40 0 0 chr4 5528490 5528515 -150101605 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 627 992 92 0 0 chr4 5528515 5528646 -150101474 - B1_Mus1 SINE Alu -13 135 5 4 627 712 181 95 19 chr4 5529400 5529558 -150100562 + RLTR16 LTR ERVK 1 170 -335 4 627 1072 247 72 50 chr4 5530927 5531289 -150098831 + ORR1D2 LTR MaLR 1 370 0 4 627 186 133 0 0 chr4 5532008 5532038 -150098082 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 4 627 404 37 19 0 chr4 5532052 5532106 -150098014 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 627 1051 279 78 21 chr4 5532139 5532744 -150097376 + L1MA6 LINE L1 5661 6299 -1 4 627 279 216 139 45 chr4 5532814 5532948 -150097172 - MTEa LTR MaLR 0 379 231 4 627 410 252 18 36 chr4 5534138 5534249 -150095871 + ORR1E LTR MaLR 18 126 -233 4 627 254 229 0 67 chr4 5534285 5534360 -150095760 + RMER19B LTR ERVK 1 70 -832 4 627 2327 103 56 54 chr4 5534924 5535334 -150094786 - IAPLTR2a LTR ERVK 0 411 1 4 627 5427 63 14 12 chr4 5535336 5536079 -150094041 - IAPEz-int LTR ERVK -2 6479 5736 4 627 1862 51 86 0 chr4 5536078 5536334 -150093786 - IAPEz-int LTR ERVK -4845 1636 1359 4 627 3622 65 2 18 chr4 5536334 5536837 -150093283 - IAPEz-int LTR ERVK -5819 662 168 4 627 226 321 0 0 chr4 5536837 5536890 -150093230 - RLTR27 LTR ERVK -34 275 223 5 627 932 120 15 94 chr4 5536890 5537093 -150093027 - IAPEz-int LTR ERVK -6286 195 9 4 627 2327 103 56 54 chr4 5537094 5537504 -150092616 - IAPLTR2a LTR ERVK 0 411 1 4 627 1926 159 100 3 chr4 5537746 5538105 -150092015 - ORR1B1 LTR MaLR 0 394 1 5 627 504 320 31 0 chr4 5538973 5539101 -150091019 + RSINE1 SINE B4 9 140 -25 5 627 420 55 0 0 chr4 5539101 5539156 -150090964 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 627 23 33 0 0 chr4 5539434 5539464 -150090656 + AT_rich Low_complexity Low_complexity 1 30 0 5 627 285 377 0 0 chr4 5539503 5539580 -150090540 - B1F1 SINE Alu -71 78 2 5 627 261 230 10 20 chr4 5539786 5539888 -150090232 + GA-rich Low_complexity Low_complexity 2 102 0 5 627 276 264 111 19 chr4 5540127 5540289 -150089831 - Lx9 LINE L1 -134 7510 7334 5 627 491 286 82 18 chr4 5540297 5540468 -150089652 - B3A SINE B2 -16 182 1 5 627 510 254 182 6 chr4 5540531 5540701 -150089419 + B3 SINE B2 3 202 -14 5 627 21 0 0 0 chr4 5540701 5540722 -150089398 + AT_rich Low_complexity Low_complexity 1 21 0 6 627 181 197 12 116 chr4 5541528 5541614 -150088506 + L4 LINE RTE 260 336 -1693 6 627 262 295 83 76 chr4 5541699 5541831 -150088289 + MLT1A LTR MaLR 64 196 -178 6 627 1661 233 85 3 chr4 5542056 5542443 -150087677 - MTD LTR MaLR 0 419 1 6 627 333 188 144 29 chr4 5542457 5542561 -150087559 + RMER15 LTR ERVL 1 116 -459 6 627 646 260 106 25 chr4 5542585 5542822 -150087298 + RMER15 LTR ERVL 271 526 -49 6 627 342 227 11 33 chr4 5542956 5543047 -150087073 - MLT1A1 LTR MaLR 0 408 320 6 627 251 67 44 0 chr4 5543628 5543673 -150086447 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 627 1478 199 57 9 chr4 5543811 5544151 -150085969 + MTD LTR MaLR 6 400 -19 6 627 362 307 28 115 chr4 5545639 5545873 -150084247 - MTEa LTR MaLR -1 378 133 6 627 371 290 162 9 chr4 5546640 5546856 -150083264 + L1MA5 LINE L1 4961 5209 -934 6 627 827 266 39 28 chr4 5547013 5547376 -150082744 + L1MA5 LINE L1 5341 5707 -593 6 627 487 261 131 84 chr4 5547887 5548168 -150081952 - ORR1E LTR MaLR -3 376 67 7 627 1242 95 0 0 chr4 5548265 5548444 -150081676 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 627 447 364 16 0 chr4 5548449 5548578 -150081542 - RSINE1 SINE B4 -32 133 3 7 627 622 290 105 33 chr4 5549201 5549593 -150080527 + L1MA5 LINE L1 5770 6189 -111 6 627 468 51 0 0 chr4 5550332 5550391 -150079729 + (CATA)n Simple_repeat Simple_repeat 4 62 0 7 627 259 377 27 20 chr4 5550482 5550631 -150079489 + MLT1B LTR MaLR 241 390 0 7 627 378 218 50 92 chr4 5550991 5551174 -150078946 + B3A SINE B2 7 186 -9 7 627 318 50 0 0 chr4 5551600 5551640 -150078480 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 627 21 36 0 0 chr4 5551846 5551874 -150078246 + AT_rich Low_complexity Low_complexity 1 28 0 7 627 22 0 0 0 chr4 5552098 5552120 -150078000 + AT_rich Low_complexity Low_complexity 1 22 0 7 627 2077 120 38 0 chr4 5552137 5552454 -150077666 - ORR1A4 LTR MaLR 0 329 1 7 627 1312 57 85 0 chr4 5552772 5552949 -150077171 + B2_Mm2 SINE B2 4 195 0 8 627 279 145 116 0 chr4 5553301 5553370 -150076750 - Lx7 LINE L1 -5 7691 7615 8 627 420 260 39 20 chr4 5554204 5554357 -150075763 - ERVL-B4-int LTR ERVL -723 4991 4836 8 627 300 53 0 0 chr4 5555560 5555598 -150074522 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 627 306 296 44 15 chr4 5555808 5555945 -150074175 - L1ME3A LINE L1 -182 5991 5851 8 627 309 340 103 13 chr4 5556043 5556198 -150073922 - L1ME3A LINE L1 -549 5691 5523 8 627 908 306 11 19 chr4 5557272 5557535 -150072585 + B4A SINE B4 32 292 0 8 627 324 0 0 0 chr4 5557548 5557584 -150072536 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 627 515 194 0 0 chr4 5558193 5558296 -150071824 - B1_Mur4 SINE Alu -20 130 28 8 627 1654 292 159 20 chr4 5559175 5560260 -150069860 - Lx8 LINE L1 0 7473 6238 8 627 2961 168 28 12 chr4 5560630 5561198 -150068922 - RLTR20B3 LTR ERVK 0 577 1 8 627 26 50 0 0 chr4 5561649 5561689 -150068431 + AT_rich Low_complexity Low_complexity 1 40 0 9 627 1146 214 82 21 chr4 5561798 5562089 -150068031 - Lx6 LINE L1 -11 7449 7141 9 627 573 271 78 0 chr4 5562168 5562334 -150067786 + Lx8 LINE L1 6742 6920 -553 9 627 3599 18 0 0 chr4 5562765 5563161 -150066959 + MTA_Mm LTR MaLR 1 396 0 9 627 219 339 0 0 chr4 5564243 5564305 -150065815 - ID4 SINE ID -19 64 3 9 627 713 0 41 0 chr4 5565916 5566013 -150064107 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 9 627 1219 184 36 230 chr4 5566078 5566552 -150063568 - ORR1C2 LTR MaLR 0 384 3 9 627 290 325 15 89 chr4 5566643 5566778 -150063342 - PB1 SINE Alu -2 125 1 9 627 228 267 81 0 chr4 5566839 5566925 -150063195 - Charlie10 DNA MER1_type -2686 136 44 9 627 305 262 12 12 chr4 5567088 5567173 -150062947 + MER2 DNA MER2_type 82 166 -179 9 627 303 311 90 0 chr4 5567199 5567321 -150062799 + MER2 DNA MER2_type 133 265 -80 9 627 250 293 28 66 chr4 5567780 5567886 -150062234 + MER3 DNA MER1_type 31 132 -77 1 627 690 113 0 19 chr4 5569732 5569840 -150060280 - B1_Mur4 SINE Alu 0 150 45 1 627 255 250 65 43 chr4 5569761 5569853 -150060267 - MT2B LTR ERVL -323 278 185 1 627 249 300 46 0 chr4 5571100 5571230 -150058890 + G-rich Low_complexity Low_complexity 2 137 0 1 627 243 146 0 0 chr4 5572498 5572539 -150057581 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 627 225 0 0 0 chr4 5574727 5574752 -150055368 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 627 282 29 0 0 chr4 5575367 5575402 -150054718 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 627 216 0 0 0 chr4 5575474 5575498 -150054622 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 627 21 0 0 0 chr4 5575967 5575988 -150054132 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 482 281 54 35 chr4 5576119 5576423 -150053697 - MTE2b LTR MaLR 0 379 51 1 627 324 333 0 0 chr4 5576416 5576506 -150053614 - MTE2b LTR MaLR -281 98 9 1 627 804 159 191 5 chr4 5576549 5576738 -150053382 - URR1A DNA MER1_type 0 226 3 1 627 264 59 0 0 chr4 5576876 5576910 -150053210 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 627 279 0 0 0 chr4 5576996 5577027 -150053093 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 627 2010 132 61 20 chr4 5578905 5579111 -150051009 - RMER17C LTR ERVK 0 410 208 1 627 522 0 0 0 chr4 5579111 5579169 -150050951 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 627 2010 132 61 20 chr4 5579169 5579356 -150050764 - RMER17C LTR ERVK -203 207 1 1 627 222 374 28 9 chr4 5579443 5579551 -150050569 + B3 SINE B2 97 206 -10 1 627 22319 142 43 13 chr4 5580643 5586630 -150043490 - Lx4B LINE L1 -3 7055 868 1 627 417 20 0 0 chr4 5586630 5586680 -150043440 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 627 2994 173 120 15 chr4 5586680 5586995 -150043125 - Lx4B LINE L1 -6219 867 509 1 627 854 19 0 9 chr4 5587115 5587220 -150042900 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 627 231 88 0 0 chr4 5588708 5588742 -150041378 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 627 719 292 74 7 chr4 5588881 5589150 -150040970 + MLT1A0 LTR MaLR 51 337 -28 1 627 1045 232 172 35 chr4 5589419 5589786 -150040334 + MTD LTR MaLR 2 418 -1 1 627 3035 81 8 0 chr4 5590909 5591306 -150038814 + MTB LTR MaLR 1 400 0 1 627 224 311 42 70 chr4 5591551 5591693 -150038427 + L3 LINE CR1 3215 3352 -1137 1 627 243 0 0 0 chr4 5591876 5591903 -150038217 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 627 234 62 0 0 chr4 5592409 5592441 -150037679 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 627 210 191 0 0 chr4 5593736 5593783 -150036337 + (CATG)n Simple_repeat Simple_repeat 1 47 0 1 627 538 248 29 0 chr4 5593792 5593929 -150036191 - B1F SINE Alu 0 149 9 1 627 222 37 0 0 chr4 5595558 5595585 -150034535 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 627 450 319 70 29 chr4 5596384 5596729 -150033391 + L1MB3 LINE L1 5818 6176 -7 1 627 369 0 0 0 chr4 5597247 5597288 -150032832 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 627 180 275 259 7 chr4 5598925 5599064 -150031056 - MIRb SINE MIR -42 226 53 1 627 202 132 26 0 chr4 5599141 5599179 -150030941 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 627 475 231 7 37 chr4 5600128 5600143 -150029977 - ORR1A4 LTR MaLR -169 177 165 1 627 1217 205 124 43 chr4 5600143 5600489 -150029631 - ORR1D1 LTR MaLR 0 374 1 1 627 647 160 1 19 chr4 5600489 5600622 -150029498 - ORR1A4 LTR MaLR -182 164 15 1 627 1564 214 138 97 chr4 5600698 5601551 -150028569 + RMER17B LTR ERVK 1 804 -104 1 627 627 184 0 64 chr4 5602041 5602198 -150027922 - RMER10B LTR ERVL -58 340 194 1 627 825 312 86 23 chr4 5602244 5602811 -150027309 - L1ME1 LINE L1 -25 6154 5552 1 627 615 325 62 7 chr4 5603066 5603373 -150026747 - MER2 DNA MER2_type -20 325 2 1 627 211 274 48 0 chr4 5604211 5604273 -150025847 + MIRm SINE MIR 83 147 -129 1 627 180 176 0 0 chr4 5605495 5605529 -150024591 + T-rich Low_complexity Low_complexity 1 34 0 1 627 207 354 0 0 chr4 5606236 5606318 -150023802 + CT-rich Low_complexity Low_complexity 2 83 0 1 627 258 286 0 0 chr4 5607688 5607751 -150022369 + tRNA-Ala-GCY_ tRNA tRNA 3 65 -10 1 627 396 0 0 0 chr4 5607751 5607795 -150022325 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 627 277 307 28 18 chr4 5609395 5609518 -150020602 + ORR1E LTR MaLR 4 124 -246 1 627 700 286 18 0 chr4 5609571 5609739 -150020381 + B3A SINE B2 3 173 -25 1 627 247 264 81 0 chr4 5609980 5610067 -150020053 + ORR1E LTR MaLR 272 365 -14 1 627 597 267 64 38 chr4 5610347 5610612 -150019508 - MER44B DNA MER2_type -21 529 258 1 627 396 0 0 0 chr4 5612496 5612540 -150017580 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 627 480 59 0 0 chr4 5613032 5613100 -150017020 + (TCTCTG)n Simple_repeat Simple_repeat 6 73 0 1 627 252 0 0 0 chr4 5613100 5613128 -150016992 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 627 1863 234 133 28 chr4 5613332 5614102 -150016018 - RMER1A Other Other -50 1016 15 1 627 1023 241 175 16 chr4 5614086 5614406 -150015714 - RMER1B Other Other -651 415 45 1 627 518 228 8 23 chr4 5615838 5615968 -150014152 + RSINE1 SINE B4 2 129 -36 1 627 288 0 0 0 chr4 5615975 5616007 -150014113 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 627 2224 221 50 35 chr4 5616099 5616679 -150013441 - RMER13B LTR ERVK -9 899 311 1 627 1640 170 18 78 chr4 5616666 5617164 -150012956 - RMER17B LTR ERVK -519 439 2 1 627 3958 242 100 47 chr4 5617958 5618125 -150011995 - Lx9 LINE L1 -10 7634 7424 1 627 198 0 0 0 chr4 5618125 5618147 -150011973 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 627 3958 242 100 47 chr4 5618147 5618654 -150011466 - Lx9 LINE L1 -221 7423 6916 1 627 1116 85 0 0 chr4 5618654 5618795 -150011325 + B1_Mus1 SINE Alu 2 142 -6 1 627 3958 242 100 47 chr4 5618795 5619498 -150010622 - Lx9 LINE L1 -729 6915 6184 1 627 5251 134 87 22 chr4 5619623 5620577 -150009543 - ETnERV2-int LTR ERVK -5320 2086 1071 1 627 778 219 140 121 chr4 5620587 5620966 -150009154 - ETnERV2-int LTR ERVK -2927 387 2 1 627 2591 105 22 12 chr4 5620967 5621372 -150008748 - RLTR9E LTR ERVK 0 409 1 1 627 464 176 12 0 chr4 5621993 5622078 -150008042 + ID_B1 SINE B4 94 179 -45 1 627 810 266 23 33 chr4 5622441 5622655 -150007465 + B3 SINE B2 1 212 -4 1 627 437 304 120 34 chr4 5622665 5622873 -150007247 - MLT1A LTR MaLR -5 369 144 1 627 237 242 104 15 chr4 5623125 5623192 -150006928 + PB1D10 SINE Alu 36 108 -9 1 627 300 154 0 0 chr4 5624542 5624594 -150005526 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 1 627 432 0 0 0 chr4 5624596 5624644 -150005476 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 627 260 277 30 0 chr4 5626956 5627031 -150003089 + ID4 SINE ID 3 79 -73 1 627 25 0 0 0 chr4 5628192 5628217 -150001903 + AT_rich Low_complexity Low_complexity 1 25 0 1 627 206 300 143 34 chr4 5628528 5628766 -150001354 - L2a LINE L2 -3 3423 3160 1 627 342 0 0 0 chr4 5629547 5629585 -150000535 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 627 229 309 126 9 chr4 5629926 5630037 -150000083 + B1F SINE Alu 21 144 -5 1 627 266 274 0 16 chr4 5630048 5630111 -150000009 + ID4_ SINE ID 2 63 -20 1 627 483 48 0 0 chr4 5630997 5631059 -149999061 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 627 322 285 234 35 chr4 5631173 5631460 -149998660 + MTD LTR MaLR 1 346 -54 1 627 805 61 0 0 chr4 5631887 5631986 -149998134 - Lx3_Mus LINE L1 -987 6022 5924 1 627 270 0 0 0 chr4 5631986 5632016 -149998104 + (CTG)n Simple_repeat Simple_repeat 2 31 0 1 627 444 118 0 0 chr4 5632014 5632082 -149998038 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1 627 4073 59 3 0 chr4 5632082 5632628 -149997492 - Lx3_Mus LINE L1 -1089 5920 5377 1 627 1208 129 5 15 chr4 5632628 5632832 -149997288 + Lx3_Mus LINE L1 6800 7001 -8 1 627 1965 217 71 10 chr4 5633134 5633614 -149996506 - RMER15 LTR ERVL -40 535 27 1 627 240 203 14 72 chr4 5633644 5633713 -149996407 - RMER15 LTR ERVL -510 65 1 1 627 502 288 114 19 chr4 5633779 5634087 -149996033 - L1ME2 LINE L1 -191 5973 5637 1 78 38714 30 0 1 chr4 5635824 5642462 -149987658 - L1Md_T LINE L1 0 6585 1 1 628 1698 143 8 187 chr4 5643339 5643837 -149986283 + MTC LTR MaLR 1 409 -12 1 628 552 321 70 55 chr4 5645001 5645473 -149984647 + Lx8 LINE L1 6986 7464 -9 1 628 264 289 63 56 chr4 5646460 5646485 -149983635 - B1_Mur3 SINE Alu -3 146 3 1 628 321 310 34 17 chr4 5646485 5646603 -149983517 - ID_B1 SINE B4 -21 203 84 1 628 22 0 0 0 chr4 5646614 5646636 -149983484 + AT_rich Low_complexity Low_complexity 1 22 0 1 628 3180 131 96 151 chr4 5647206 5648006 -149982114 - RMER6A LTR ERVK 0 756 1 1 628 1405 207 97 55 chr4 5648268 5648651 -149981469 - MTD LTR MaLR -1 418 20 1 628 24 0 0 0 chr4 5650376 5650400 -149979720 + AT_rich Low_complexity Low_complexity 1 24 0 1 628 654 130 0 0 chr4 5650417 5650525 -149979595 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 1 628 23 0 0 0 chr4 5651261 5651284 -149978836 + AT_rich Low_complexity Low_complexity 1 23 0 1 628 234 0 0 0 chr4 5653304 5653330 -149976790 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 628 498 33 0 0 chr4 5653486 5653546 -149976574 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 628 251 254 16 0 chr4 5653598 5653661 -149976459 - ID4 SINE ID -16 67 4 1 628 189 0 0 0 chr4 5653661 5653682 -149976438 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 1 628 328 236 14 0 chr4 5654283 5654355 -149975765 + ID SINE ID 1 73 -151 1 628 308 279 99 79 chr4 5656112 5656264 -149973856 + L2a LINE L2 3272 3426 0 1 628 719 147 14 81 chr4 5658126 5658274 -149971846 + URR1B DNA MER1_type 39 176 -49 1 628 1104 245 111 6 chr4 5661558 5661891 -149968229 + MTE2b LTR MaLR 12 379 0 1 628 294 106 0 0 chr4 5662340 5662387 -149967733 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 628 198 0 0 0 chr4 5662914 5662936 -149967184 + (CAAG)n Simple_repeat Simple_repeat 1 22 0 2 628 1466 150 102 25 chr4 5663067 5663098 -149967022 + ORR1B2 LTR MaLR 10 38 -329 2 628 315 0 0 0 chr4 5663098 5663133 -149966987 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 628 1466 150 102 25 chr4 5663133 5663415 -149966705 + ORR1B2 LTR MaLR 39 347 -20 2 628 569 127 19 10 chr4 5664679 5664782 -149965338 - URR1B DNA MER1_type 0 225 122 2 628 3506 118 66 4 chr4 5664782 5665326 -149964794 + Lx LINE L1 6076 6653 -1 2 628 486 88 0 0 chr4 5665340 5665408 -149964712 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 2 628 345 181 277 0 chr4 5665408 5665491 -149964629 - URR1B DNA MER1_type -120 105 1 2 628 24 32 0 0 chr4 5668809 5668840 -149961280 + AT_rich Low_complexity Low_complexity 1 31 0 2 628 486 149 0 0 chr4 5670199 5670286 -149959834 + (TCC)n Simple_repeat Simple_repeat 3 89 0 2 628 447 319 256 8 chr4 5670294 5670800 -149959320 - Lx8 LINE L1 -29 7444 6813 2 628 788 305 94 75 chr4 5671875 5672413 -149957707 + Tigger6a DNA MER2_type 8 578 -505 2 628 2207 172 36 12 chr4 5672413 5672824 -149957296 - MTC LTR MaLR 0 421 1 2 628 788 304 171 58 chr4 5672824 5673270 -149956850 + Tigger6a DNA MER2_type 579 1081 -2 2 628 420 310 99 14 chr4 5673405 5673618 -149956502 - MER2 DNA MER2_type -19 326 96 2 628 26 30 0 0 chr4 5674022 5674055 -149956065 + AT_rich Low_complexity Low_complexity 1 33 0 2 628 909 182 7 0 chr4 5677751 5677899 -149952221 + B1_Mur4 SINE Alu 2 150 0 2 628 693 294 133 19 chr4 5677909 5678225 -149951895 + ORR1D2 LTR MaLR 19 370 -4 2 628 263 318 30 0 chr4 5678994 5679060 -149951060 - MER2 DNA MER2_type -16 329 262 2 628 461 327 133 9 chr4 5680059 5680383 -149949737 - MLT1A0 LTR MaLR -1 364 1 2 628 456 225 99 0 chr4 5681238 5681389 -149948731 - MER44B DNA MER2_type -41 509 344 2 628 388 240 29 9 chr4 5681674 5681779 -149948341 + MTD LTR MaLR 313 419 0 2 628 201 343 0 0 chr4 5682272 5682342 -149947778 + MIRc SINE MIR 40 109 -159 2 628 416 269 78 39 chr4 5682522 5682715 -149947405 + MTD LTR MaLR 12 276 -143 2 628 2019 121 9 1 chr4 5683284 5683626 -149946494 - L1_Mm LINE L1 -559 5681 5329 2 628 41087 18 2 6 chr4 5683611 5690188 -149939932 - L1Md_A LINE L1 -2 6580 32 2 628 597 84 10 10 chr4 5690188 5690284 -149939836 - L1_Mus1 LINE L1 -8 6559 6464 2 628 715 237 99 52 chr4 5690284 5690627 -149939493 - RLTR10D LTR ERVK 0 359 1 2 628 8340 277 18 34 chr4 5690627 5693949 -149936171 - IAP-d-int LTR ERVK 0 6542 3170 2 628 5362 72 11 1 chr4 5694032 5694727 -149935393 + L1_Mus1 LINE L1 5866 6567 0 2 628 369 329 135 30 chr4 5695646 5695978 -149934142 + MER31A LTR ERV1 78 430 -36 2 628 491 254 35 7 chr4 5697380 5697523 -149932597 - ID_B1 SINE B4 0 224 78 2 628 439 297 114 23 chr4 5697570 5697832 -149932288 - MLT1A0 LTR MaLR -79 286 1 2 628 243 0 0 0 chr4 5698131 5698158 -149931962 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 628 703 246 192 13 chr4 5701465 5701782 -149928338 + MTE2b LTR MaLR 2 375 -4 2 628 24 0 0 0 chr4 5703025 5703049 -149927071 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 330 280 30 10 chr4 5703083 5703184 -149926936 + B1_Mur1 SINE Alu 46 148 -1 2 628 261 0 0 0 chr4 5703559 5703588 -149926532 + (TATG)n Simple_repeat Simple_repeat 3 31 0 2 628 243 0 0 0 chr4 5703619 5703646 -149926474 + (TATG)n Simple_repeat Simple_repeat 1 27 0 2 628 207 0 0 0 chr4 5703675 5703698 -149926422 + (TATG)n Simple_repeat Simple_repeat 1 23 0 2 628 186 43 0 0 chr4 5703831 5703854 -149926266 + (TATG)n Simple_repeat Simple_repeat 1 23 0 2 628 207 0 0 0 chr4 5703935 5703958 -149926162 + (TATG)n Simple_repeat Simple_repeat 1 23 0 2 628 529 305 74 34 chr4 5704251 5704781 -149925339 - L1MD LINE L1 -1003 5143 4604 2 628 349 198 11 19 chr4 5705099 5705196 -149924924 - L1M2 LINE L1 -481 5819 5722 2 628 2560 181 41 12 chr4 5707877 5708370 -149921750 - RLTR18B LTR ERVK -5 507 1 2 628 208 287 32 65 chr4 5708551 5708644 -149921476 + MIRm SINE MIR 155 244 -32 2 628 229 266 89 0 chr4 5708791 5708870 -149921250 - L3 LINE CR1 -2349 2140 2055 2 628 1404 98 0 5 chr4 5709144 5709338 -149920782 - B2_Mm2 SINE B2 -1 194 2 2 628 21 57 0 0 chr4 5710860 5710895 -149919225 + AT_rich Low_complexity Low_complexity 1 35 0 2 628 197 195 22 45 chr4 5710990 5711124 -149918996 + C-rich Low_complexity Low_complexity 3 133 0 2 628 885 141 52 0 chr4 5712051 5712186 -149917934 - B1_Mus1 SINE Alu -6 142 1 2 628 359 329 66 30 chr4 5712800 5712966 -149917154 + Tigger5 DNA MER2_type 15 186 -2220 2 628 255 339 9 0 chr4 5713016 5713125 -149916995 + Tigger5 DNA MER2_type 2291 2400 -6 2 628 22 0 0 0 chr4 5714452 5714474 -149915646 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 288 0 0 0 chr4 5714587 5714619 -149915501 + (TTA)n Simple_repeat Simple_repeat 3 34 0 2 628 254 269 160 70 chr4 5716796 5716952 -149913168 - B4 SINE B4 -118 174 5 2 628 2230 101 31 3 chr4 5717010 5717328 -149912792 + ORR1A2 LTR MaLR 1 327 0 2 628 225 0 0 0 chr4 5717342 5717367 -149912753 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2 628 389 273 83 0 chr4 5717966 5718087 -149912033 - ID_B1 SINE B4 -16 208 78 2 628 294 132 0 0 chr4 5718659 5718712 -149911408 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 2 628 363 319 16 16 chr4 5718712 5718833 -149911287 - MER2 DNA MER2_type -6 339 219 2 628 550 323 21 26 chr4 5718838 5719032 -149911088 + RMER30 DNA MER1_type 6 198 -4 2 628 840 306 22 79 chr4 5719072 5719438 -149910682 + ORR1E LTR MaLR 9 353 -6 2 628 228 200 67 0 chr4 5719455 5719515 -149910605 - MER2 DNA MER2_type -174 171 108 2 628 1359 161 19 17 chr4 5719761 5720077 -149910043 - RMER10A LTR ERVL -5 437 102 2 628 666 0 0 0 chr4 5720638 5720712 -149909408 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 2 628 24 0 0 0 chr4 5728472 5728496 -149901624 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 422 305 134 13 chr4 5729942 5730181 -149899939 - MLT1F1 LTR MaLR -2 678 302 2 628 866 236 165 154 chr4 5730205 5730725 -149899395 - MT2A LTR ERVL -4 529 4 2 628 250 294 0 0 chr4 5730940 5731008 -149899112 - BC1_Mm scRNA scRNA -78 74 7 2 628 388 312 121 0 chr4 5737763 5737920 -149892200 + MER2 DNA MER2_type 6 181 -164 2 628 375 322 108 25 chr4 5738232 5738441 -149891679 - MLT1B LTR MaLR 0 390 153 2 628 399 79 0 0 chr4 5738441 5738504 -149891616 - Lx9 LINE L1 0 7644 7582 2 628 375 322 108 25 chr4 5738504 5738654 -149891466 - MLT1B LTR MaLR -238 152 2 2 628 327 25 0 0 chr4 5738911 5738951 -149891169 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 628 2136 136 111 0 chr4 5739640 5739993 -149890127 + ORR1B1 LTR MaLR 1 392 -2 2 628 258 281 93 34 chr4 5740213 5740331 -149889789 - RMER15 LTR ERVL -29 546 422 2 628 692 309 52 52 chr4 5740385 5740675 -149889445 + B4A SINE B4 1 290 -2 2 628 339 167 0 0 chr4 5740678 5740744 -149889376 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 628 366 61 0 0 chr4 5741069 5741118 -149889002 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 628 2144 62 37 7 chr4 5742415 5742736 -149887384 + IAPLTR2b LTR ERVK 1 357 0 2 628 26 0 0 0 chr4 5742981 5743007 -149887113 + AT_rich Low_complexity Low_complexity 1 26 0 2 628 230 362 93 34 chr4 5743539 5743776 -149886344 - MARNA DNA Mariner -293 293 43 2 628 665 177 60 66 chr4 5744147 5744298 -149885822 - B1_Mur4 SINE Alu 0 150 1 2 628 1041 162 83 25 chr4 5744329 5744512 -149885608 + L1_Mur3 LINE L1 2736 2934 -2946 2 628 1563 179 198 6 chr4 5744512 5744865 -149885255 - MTC LTR MaLR 0 421 1 2 628 1041 162 83 25 chr4 5744865 5744921 -149885199 + L1_Mur3 LINE L1 2935 2989 -2891 2 628 786 89 0 0 chr4 5744924 5745036 -149885084 + (GAAA)n Simple_repeat Simple_repeat 4 115 0 2 628 1076 51 73 0 chr4 5745036 5745173 -149884947 + B1_Mus1 SINE Alu 2 148 0 2 628 2127 204 6 41 chr4 5745183 5745674 -149884446 + L1_Mur3 LINE L1 4328 4801 -1079 2 628 230 291 120 52 chr4 5745727 5745977 -149884143 + L1MC4 LINE L1 7143 7409 -633 2 628 39298 6 1 1 chr4 5746559 5752342 -149877778 + L1Md_A LINE L1 1 5586 -297 2 628 9209 3 0 0 chr4 5752342 5753338 -149876782 + L1Md_A LINE L1 5587 6582 0 2 628 414 0 0 0 chr4 5753516 5753562 -149876558 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 628 526 293 138 0 chr4 5754034 5754215 -149875905 + B3 SINE B2 1 206 -10 2 628 23 33 0 0 chr4 5754222 5754252 -149875868 + AT_rich Low_complexity Low_complexity 1 30 0 2 628 194 91 30 0 chr4 5754679 5754712 -149875408 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 2 628 462 105 50 140 chr4 5755168 5755268 -149874852 + RMER6B LTR ERVK 1 91 -370 2 628 1865 156 174 30 chr4 5755270 5755526 -149874594 + RMER6B LTR ERVK 1 320 -141 2 628 276 30 0 0 chr4 5755526 5755559 -149874561 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 628 1865 156 174 30 chr4 5755559 5755705 -149874415 + RMER6B LTR ERVK 321 461 0 2 628 183 171 48 24 chr4 5756178 5756220 -149873900 + MIRm SINE MIR 210 252 -24 2 628 222 0 0 73 chr4 5756823 5756864 -149873256 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 628 3657 196 55 65 chr4 5758147 5758840 -149871280 - RMER1B Other Other 0 1066 414 2 628 489 34 0 0 chr4 5758840 5758899 -149871221 + (CCA)n Simple_repeat Simple_repeat 1 59 0 2 628 3657 224 20 103 chr4 5758899 5759410 -149870710 - RMER1B Other Other -618 448 2 2 628 1606 271 69 13 chr4 5760132 5760595 -149869525 - Lx8 LINE L1 -85 7388 6900 2 628 1092 28 21 0 chr4 5761295 5761439 -149868681 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 2 628 398 187 11 0 chr4 5761446 5761537 -149868583 + GA-rich Low_complexity Low_complexity 1 92 0 2 628 413 329 61 61 chr4 5761701 5761947 -149868173 - B4 SINE B4 -3 289 44 2 628 315 294 48 19 chr4 5762204 5762308 -149867812 - MER45R DNA Tip100 -1474 107 1 2 628 467 295 185 10 chr4 5763112 5763410 -149866710 + ORR1E LTR MaLR 6 355 -4 2 628 1225 48 7 0 chr4 5764639 5764785 -149865335 + B1_Mus2 SINE Alu 1 147 0 2 628 836 37 9 0 chr4 5764801 5764909 -149865211 + (GA)n Simple_repeat Simple_repeat 2 110 0 3 628 3750 37 0 0 chr4 5765028 5765460 -149864660 - L1_Mm LINE L1 -39 5844 5413 3 628 520 285 42 0 chr4 5765462 5765606 -149864514 - MTEa LTR MaLR -217 162 13 3 628 231 214 0 18 chr4 5765711 5765768 -149864352 + MTD LTR MaLR 364 419 0 3 628 4254 78 0 0 chr4 5765831 5766379 -149863741 - L1_Mus1 LINE L1 -15 6552 6005 3 628 1066 212 4 9 chr4 5766438 5766671 -149863449 + MTD LTR MaLR 188 419 0 3 78 24447 162 29 21 chr4 5766800 5773021 -149857099 + L1_Mus1 LINE L1 261 6654 0 3 629 355 294 52 17 chr4 5773235 5773408 -149856712 - L1MA4A LINE L1 -371 5932 5754 3 629 218 302 0 0 chr4 5773510 5773625 -149856495 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 629 393 241 0 22 chr4 5773626 5773715 -149856405 - B4A SINE B4 0 292 206 3 629 615 345 37 33 chr4 5773789 5774059 -149856061 + B4A SINE B4 1 271 -21 3 629 360 0 0 0 chr4 5774071 5774111 -149856009 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 629 537 58 0 0 chr4 5774269 5774338 -149855782 + (TATG)n Simple_repeat Simple_repeat 2 70 0 3 629 335 225 44 11 chr4 5774789 5774879 -149855241 + B1F1 SINE Alu 13 105 -44 3 629 605 258 92 11 chr4 5775404 5775588 -149854532 + RLTR12B LTR ERVK 47 245 -283 3 629 535 164 16 0 chr4 5775620 5775748 -149854372 + GA-rich Low_complexity Low_complexity 2 131 0 3 629 1553 250 38 46 chr4 5775764 5776242 -149853878 - RMER19C LTR ERVK 0 611 138 3 629 3598 38 0 0 chr4 5776751 5777173 -149852947 + L1Md_T LINE L1 6161 6582 0 3 629 1378 128 82 23 chr4 5777358 5777615 -149852505 - L1_Mur1 LINE L1 -501 5385 5114 3 629 8516 106 39 13 chr4 5777605 5778953 -149851167 + Lx3B LINE L1 5587 6970 -3 3 629 1145 55 7 7 chr4 5779641 5779653 -149850467 - B1_Mus1 SINE Alu -1 147 136 3 629 306 0 0 0 chr4 5779653 5779687 -149850433 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 3 629 1145 55 7 7 chr4 5779687 5779820 -149850300 - B1_Mus1 SINE Alu -13 135 2 3 629 379 283 0 96 chr4 5780163 5780288 -149849832 - MTE2b LTR MaLR -4 375 263 3 629 4274 132 30 28 chr4 5780727 5781435 -149848685 - Lx4B LINE L1 -8 7050 6342 3 629 1716 174 36 6 chr4 5782700 5783036 -149847084 - Lx4B LINE L1 -705 6353 6008 3 629 289 149 0 0 chr4 5783036 5783083 -149847037 + Lx4A LINE L1 5962 6008 -1050 3 629 451 197 0 22 chr4 5783497 5783632 -149846488 + GA-rich Low_complexity Low_complexity 2 133 0 3 629 15475 173 14 9 chr4 5784199 5784298 -149845822 - L1_Mur1 LINE L1 -1047 4839 4739 3 629 347 0 0 23 chr4 5784298 5784342 -149845778 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 629 15475 173 14 9 chr4 5784342 5787495 -149842625 - L1_Mur1 LINE L1 -1148 4738 1571 3 629 2533 94 5 39 chr4 5787495 5787906 -149842214 + RMER17A LTR ERVK 1 397 -354 3 629 400 219 13 41 chr4 5787899 5788033 -149842087 + RMER17A2 LTR ERVK 677 887 -19 3 629 503 107 0 0 chr4 5788037 5788121 -149841999 - MusHAL1 LINE L1 -2339 1014 931 3 629 1660 144 11 7 chr4 5788121 5788400 -149841720 + MT2C_Mm LTR ERVL 196 475 0 3 629 1907 81 0 0 chr4 5788400 5788712 -149841408 - MusHAL1 LINE L1 -2419 934 624 3 629 858 196 5 68 chr4 5789152 5789371 -149840749 - RMER10B LTR ERVL 0 398 194 3 629 595 164 8 8 chr4 5789373 5789502 -149840618 + GA-rich Low_complexity Low_complexity 2 130 0 3 629 1146 215 55 6 chr4 5789502 5789781 -149840339 - RMER10B LTR ERVL -144 298 3 3 629 528 16 0 0 chr4 5789789 5789850 -149840270 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 3 629 22 35 0 0 chr4 5791176 5791205 -149838915 + AT_rich Low_complexity Low_complexity 1 29 0 3 629 727 244 165 94 chr4 5791633 5792026 -149838094 + MT2A LTR ERVL 1 421 -112 3 629 295 270 0 13 chr4 5792048 5792123 -149837997 + GA-rich Low_complexity Low_complexity 2 75 0 3 629 295 100 0 39 chr4 5792123 5792175 -149837945 + MT2A LTR ERVL 535 584 0 3 629 1186 303 118 4 chr4 5792176 5792736 -149837384 - Lx8 LINE L1 -532 6941 6318 3 629 31008 107 26 19 chr4 5792833 5799138 -149830982 - L1Md_F2 LINE L1 -13 6569 217 3 629 387 60 0 0 chr4 5799317 5799367 -149830753 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 629 2805 247 3 11 chr4 5799367 5799986 -149830134 - Lx5 LINE L1 -6 7044 6431 3 629 379 116 14 0 chr4 5799989 5800058 -149830062 - Lx5 LINE L1 -1180 5870 5801 3 629 4905 161 79 33 chr4 5800052 5800756 -149829364 + L1_Mur2 LINE L1 3098 3822 -2055 3 629 2967 76 5 10 chr4 5800756 5801154 -149828966 + MTA_Mm LTR MaLR 1 396 0 3 629 4905 161 79 33 chr4 5801154 5801345 -149828775 + L1_Mur2 LINE L1 3823 4050 -1827 3 629 3862 166 14 17 chr4 5801345 5802039 -149828081 + RLTR17 LTR ERVK 1 692 0 3 629 4905 161 79 33 chr4 5802039 5802272 -149827848 + L1_Mur2 LINE L1 4051 4279 -1598 3 629 597 61 0 0 chr4 5802706 5802788 -149827332 - L1Md_F2 LINE L1 -613 5969 5888 3 629 7811 37 2 1 chr4 5803107 5804184 -149825936 - L1Md_F2 LINE L1 -12 6570 5493 3 629 3002 56 0 0 chr4 5804184 5804541 -149825579 - IAPEY2_LTR LTR ERVK 0 357 1 3 629 1412 42 0 59 chr4 5804541 5804744 -149825376 - IAPEY3-int LTR ERVK 0 7680 7490 3 629 539 92 0 0 chr4 5804748 5804824 -149825296 - IAPEY3-int LTR ERVK -621 7059 6984 3 629 218 377 36 14 chr4 5804824 5804964 -149825156 - L3b LINE CR1 -29 453 311 3 629 3097 90 7 0 chr4 5804964 5805398 -149824722 - IAPEY3-int LTR ERVK -5002 2678 2242 3 629 8516 145 9 16 chr4 5805378 5807005 -149823115 - IAPEY3-int LTR ERVK -5698 1982 1 3 629 3020 48 0 0 chr4 5807010 5807364 -149822756 - IAPEY2_LTR LTR ERVK -3 354 1 3 629 29608 90 9 0 chr4 5807364 5812564 -149817556 - L1Md_F LINE L1 -385 5498 253 3 629 25 51 0 0 chr4 5812691 5812730 -149817390 + AT_rich Low_complexity Low_complexity 1 39 0 3 629 221 211 17 17 chr4 5812946 5813004 -149817116 + GA-rich Low_complexity Low_complexity 2 59 0 3 629 2319 168 58 2 chr4 5813713 5814112 -149816008 - MTC LTR MaLR 0 421 1 3 629 206 229 150 0 chr4 5814296 5814367 -149815753 + MIR SINE MIR 69 152 -56 3 629 239 330 192 42 chr4 5814539 5814732 -149815388 - Charlie15a DNA MER1_type -2 222 1 3 629 398 327 78 109 chr4 5815171 5815658 -149814462 + L1M4 LINE L1 10 481 -6061 3 629 1680 150 30 10 chr4 5815983 5816279 -149813841 + RLTR9A LTR ERVK 67 368 0 3 629 234 283 146 13 chr4 5816283 5816516 -149813604 + L1M4 LINE L1 4123 4386 -2258 3 629 1065 291 67 8 chr4 5816634 5817005 -149813115 + Lx8 LINE L1 6553 6945 -528 3 629 655 158 7 7 chr4 5817005 5817152 -149812968 + (CA)n Simple_repeat Simple_repeat 1 147 0 3 629 408 286 120 14 chr4 5817152 5817443 -149812677 + L1M4 LINE L1 4480 4801 -1843 3 629 358 223 16 0 chr4 5817471 5817592 -149812528 + (TA)n Simple_repeat Simple_repeat 2 124 0 3 629 332 200 114 0 chr4 5817619 5817724 -149812396 + L1M4 LINE L1 4881 4997 -1647 3 629 986 138 0 0 chr4 5817777 5817922 -149812198 - B1_Mur4 SINE Alu -5 145 1 3 629 305 333 106 20 chr4 5818134 5818333 -149811787 + L1M4 LINE L1 5120 5335 -1309 3 629 553 256 119 20 chr4 5818428 5818822 -149811298 + L1M4 LINE L1 5463 5895 -749 3 629 633 301 172 29 chr4 5818990 5819298 -149810822 + RMER1B Other Other 44 395 -671 3 629 428 325 29 108 chr4 5819295 5819439 -149810681 + RMER1C Other Other 1068 1201 -141 3 629 234 0 0 0 chr4 5819439 5819465 -149810655 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 629 428 325 29 108 chr4 5819465 5819599 -149810521 + RMER1C Other Other 1202 1324 -18 3 629 28 29 0 0 chr4 5819691 5819726 -149810394 + AT_rich Low_complexity Low_complexity 1 35 0 3 629 8313 130 13 31 chr4 5819849 5820236 -149809884 - Lx2 LINE L1 0 6997 6628 3 629 1054 95 7 0 chr4 5820236 5820373 -149809747 - B1_Mus1 SINE Alu -9 139 2 3 629 8313 147 11 21 chr4 5820373 5822006 -149808114 - Lx2 LINE L1 -370 6627 4997 3 629 430 246 67 47 chr4 5822006 5822155 -149807965 + MT2B LTR ERVL 113 264 -337 3 629 824 95 95 0 chr4 5822063 5822189 -149807931 + B1_Mus2 SINE Alu 10 147 0 3 629 10551 158 19 20 chr4 5822234 5823625 -149806495 - Lx2 LINE L1 -1600 4286 2876 3 629 1043 95 0 13 chr4 5823625 5823775 -149806345 - B1_Mus1 SINE Alu 0 148 1 3 629 10551 158 19 20 chr4 5823775 5824561 -149805559 - Lx2 LINE L1 -3011 2875 2111 3 629 309 261 130 0 chr4 5824569 5824661 -149805459 - Lx6 LINE L1 -110 7350 7247 3 629 1464 66 30 0 chr4 5825090 5825287 -149804833 + L1_Mus1 LINE L1 6365 6567 0 3 629 21 0 0 0 chr4 5825889 5825910 -149804210 + AT_rich Low_complexity Low_complexity 1 21 0 3 629 885 68 0 0 chr4 5826174 5826291 -149803829 + (GGAGA)n Simple_repeat Simple_repeat 5 121 0 3 629 707 22 11 0 chr4 5826315 5826404 -149803716 + (GAAAA)n Simple_repeat Simple_repeat 2 91 0 3 629 24 53 0 0 chr4 5826594 5826632 -149803488 + AT_rich Low_complexity Low_complexity 1 38 0 3 629 5382 52 12 1 chr4 5826799 5827418 -149802702 - L1_Mm LINE L1 -19 5864 5246 3 629 414 0 0 0 chr4 5827418 5827464 -149802656 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 629 5382 52 12 1 chr4 5827464 5827562 -149802558 - L1_Mm LINE L1 -638 5245 5141 3 629 494 16 0 0 chr4 5827561 5827622 -149802498 + L1Md_F2 LINE L1 5853 5913 -669 3 629 1993 85 51 7 chr4 5827622 5827917 -149802203 + L1Md_F2 LINE L1 6263 6570 -12 3 629 1402 189 77 91 chr4 5828569 5828931 -149801189 + RLTR10B2 LTR ERVK 1 357 -8 3 629 506 250 15 38 chr4 5829826 5829959 -149800161 + ORR1D2 LTR MaLR 1 130 -240 3 629 215 0 127 0 chr4 5830016 5830071 -149800049 + (CCTG)n Simple_repeat Simple_repeat 2 63 0 3 629 268 182 76 0 chr4 5830080 5830146 -149799974 + ORR1D2 LTR MaLR 268 338 -36 3 629 885 279 24 8 chr4 5830549 5830795 -149799325 - RMER5 LTR ERV1 -56 478 229 3 629 304 261 73 30 chr4 5831504 5831655 -149798465 + B3A SINE B2 65 215 -1 3 629 376 298 8 8 chr4 5832077 5832202 -149797918 - MER115 DNA Tip100 -48 645 521 3 629 328 20 41 0 chr4 5835906 5835955 -149794165 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 629 409 250 143 33 chr4 5836322 5836568 -149793552 - MER33 DNA MER1_type -1 323 49 3 629 1884 156 6 44 chr4 5837773 5838116 -149792004 + ORR1A3-int LTR MaLR 1244 1573 -390 3 629 1631 223 52 93 chr4 5838116 5838796 -149791324 + RMER17B LTR ERVK 1 638 -320 3 629 5984 134 22 9 chr4 5838797 5839778 -149790342 + Lx2A1 LINE L1 6002 6995 -13 3 629 494 319 18 24 chr4 5840267 5840431 -149789689 + RSINE1 SINE B4 3 165 0 3 629 386 330 9 9 chr4 5840492 5840605 -149789515 + PB1D10 SINE Alu 5 117 0 3 629 366 337 0 0 chr4 5841493 5841591 -149788529 - MIRb SINE MIR -107 161 64 3 629 354 387 63 10 chr4 5842227 5842433 -149787687 - LTR16A LTR ERVL -76 375 159 3 629 2346 123 75 60 chr4 5842946 5843414 -149786706 + IAPLTR2_Mm LTR ERVK 1 475 0 3 629 492 48 0 241 chr4 5843415 5843552 -149786568 + IAPEz-int LTR ERVK 9 112 -6369 3 629 250 304 0 0 chr4 5843552 5843608 -149786512 + RLTR27 LTR ERVK 220 275 -34 3 629 229 321 0 0 chr4 5843636 5843689 -149786431 + RLTR27 LTR ERVK 223 275 -34 3 629 3578 58 24 18 chr4 5843689 5844181 -149785939 + IAPEz-int LTR ERVK 168 662 -5819 3 629 2518 73 0 3 chr4 5844181 5844524 -149785596 + IAPEz-int LTR ERVK 1359 1700 -4781 3 629 6511 38 4 12 chr4 5844519 5845355 -149784765 + IAPEz-int LTR ERVK 5653 6481 0 3 629 2360 121 131 0 chr4 5845355 5845775 -149784345 + IAPLTR2_Mm LTR ERVK 1 475 0 3 629 22077 128 64 2 chr4 5846867 5851381 -149778739 + L1Md_F LINE L1 451 5249 -634 3 629 17521 87 14 7 chr4 5851408 5854699 -149775421 + L1Md_A LINE L1 416 3725 -2158 3 629 22339 82 85 1 chr4 5854700 5859912 -149770208 + L1Md_T LINE L1 271 6047 -538 4 629 3466 43 0 0 chr4 5859912 5860332 -149769788 + L1Md_T LINE L1 6166 6585 0 4 629 13799 57 10 0 chr4 5860332 5862182 -149767938 + L1Md_F3 LINE L1 3718 5586 -297 4 629 8199 43 2 0 chr4 5862183 5863177 -149766943 + L1Md_F3 LINE L1 5588 6583 -1 4 629 5409 89 36 0 chr4 5863167 5863911 -149766209 + L1_Mus1 LINE L1 5795 6565 -2 4 629 251 275 169 37 chr4 5864312 5864448 -149765672 + MLT1J2 LTR MaLR 48 201 -247 4 629 274 213 40 0 chr4 5864468 5864543 -149765577 + MLT1J2 LTR MaLR 369 446 -2 4 629 225 359 120 11 chr4 5867296 5867479 -149762641 - L2 LINE L2 -612 2807 2605 4 629 278 314 101 70 chr4 5868080 5868378 -149761742 - MLT1C LTR MaLR 0 467 161 4 629 562 289 66 73 chr4 5868691 5868964 -149761156 - MLT1E1A LTR MaLR 0 680 410 4 629 441 277 97 63 chr4 5868982 5869257 -149760863 + ORR1E LTR MaLR 7 379 0 4 629 1723 187 149 8 chr4 5869491 5869853 -149760267 - MTC LTR MaLR -8 413 1 4 629 235 380 15 23 chr4 5870307 5870439 -149759681 + MIRb SINE MIR 120 250 -18 4 629 239 355 99 0 chr4 5870578 5870699 -149759421 + MIR SINE MIR 8 140 -122 4 629 245 330 11 11 chr4 5870857 5870949 -149759171 + MIRb SINE MIR 134 225 -43 4 629 432 55 0 0 chr4 5872008 5872063 -149758057 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 629 271 200 18 0 chr4 5872480 5872535 -149757585 + ID_B1 SINE B4 103 158 -66 4 629 612 280 148 45 chr4 5872537 5872679 -149757441 + ORR1D2 LTR MaLR 29 197 -173 4 629 405 0 0 0 chr4 5872679 5872724 -149757396 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 629 612 280 148 45 chr4 5872724 5872891 -149757229 + ORR1D2 LTR MaLR 198 370 0 4 629 2235 177 184 26 chr4 5872970 5873498 -149756622 - RMER19C LTR ERVK 0 611 1 4 629 513 0 0 0 chr4 5873692 5873749 -149756371 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 629 189 222 89 0 chr4 5873835 5873880 -149756240 - L3 LINE CR1 -3504 985 937 4 629 342 0 0 0 chr4 5874167 5874205 -149755915 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4 629 21 0 0 0 chr4 5874363 5874384 -149755736 + AT_rich Low_complexity Low_complexity 1 21 0 4 629 282 321 0 0 chr4 5874557 5874666 -149755454 - L1MA4A LINE L1 -357 5946 5838 4 629 543 236 0 0 chr4 5874687 5874827 -149755293 + (TG)n Simple_repeat Simple_repeat 2 141 0 4 629 1119 319 38 69 chr4 5875085 5875662 -149754458 - Lx5 LINE L1 -13 7037 6479 4 629 17194 207 54 17 chr4 5875654 5877703 -149752417 - Lx5 LINE L1 -682 6368 4275 4 629 366 23 0 0 chr4 5877703 5877746 -149752374 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 629 17194 195 48 16 chr4 5877746 5878927 -149751193 - Lx5 LINE L1 -1603 4274 3009 4 629 333 0 0 0 chr4 5878927 5878964 -149751156 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 629 17194 195 48 16 chr4 5878964 5879917 -149750203 - Lx5 LINE L1 -2869 3008 2053 4 629 659 62 10 0 chr4 5879917 5880014 -149750106 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 629 17194 195 48 16 chr4 5880014 5880490 -149749630 - Lx5 LINE L1 -3825 2052 1535 4 629 1446 223 30 6 chr4 5880487 5880817 -149749303 - Lx4A LINE L1 -2 7056 6719 4 629 1127 188 15 45 chr4 5880807 5880949 -149749171 - Lx5 LINE L1 -4339 1538 1396 4 629 1199 68 0 0 chr4 5880949 5881097 -149749023 + B1_Mus1 SINE Alu 1 148 0 4 629 1127 218 60 60 chr4 5881097 5881677 -149748443 - Lx5 LINE L1 -4482 1395 893 4 629 339 44 0 0 chr4 5882680 5882725 -149747395 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 629 423 250 112 8 chr4 5882761 5882886 -149747234 - ID_B1 SINE B4 -85 139 2 4 629 313 296 61 0 chr4 5884768 5884866 -149745254 - MLT1D LTR MaLR -118 387 284 4 629 793 307 43 36 chr4 5884981 5885261 -149744859 - RMER15 LTR ERVL -15 560 279 4 629 229 239 92 61 chr4 5885264 5885362 -149744758 - RMER15 LTR ERVL -414 161 61 4 629 1183 183 101 0 chr4 5885514 5885733 -149744387 - ORR1B1 LTR MaLR 0 394 154 4 629 1956 159 25 47 chr4 5885726 5886143 -149743977 - ORR1B1-int LTR MaLR -15 1948 1147 4 629 240 221 60 72 chr4 5886104 5886187 -149743933 + MLT2B1 LTR ERVL 478 559 -8 4 629 8245 62 1 6 chr4 5886318 5888135 -149741985 - L1Md_F2 LINE L1 0 6582 4774 4 629 1187 81 0 0 chr4 5888936 5889084 -149741036 + B1_Mus1 SINE Alu 1 148 0 4 629 183 107 71 0 chr4 5889085 5889141 -149740979 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 4 629 546 16 0 0 chr4 5890892 5890955 -149739165 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 4 629 1610 227 23 51 chr4 5891974 5892196 -149737924 - ORR1C2 LTR MaLR 0 384 177 4 629 1703 226 27 169 chr4 5892196 5892908 -149737212 + RMER19C LTR ERVK 1 611 0 4 629 1610 227 23 51 chr4 5892908 5893080 -149737040 - ORR1C2 LTR MaLR -208 176 2 4 629 1103 82 19 6 chr4 5893146 5893306 -149736814 + B2_Mm2 SINE B2 1 162 -33 4 629 252 86 0 0 chr4 5893308 5893343 -149736777 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 629 281 196 0 0 chr4 5894449 5894495 -149735625 + RLTR42 LTR ERVK 1 46 -193 4 629 1248 162 4 0 chr4 5894800 5895028 -149735092 - Lx3C LINE L1 -242 6734 6506 4 629 1674 142 35 14 chr4 5895028 5895313 -149734807 - ORR1A3 LTR MaLR -35 291 1 4 629 358 127 28 0 chr4 5895316 5895387 -149734733 + RLTR42-int LTR ERVK 1075 1147 -4375 4 629 276 205 49 37 chr4 5895383 5895464 -149734656 + RLTR42-int LTR ERVK 1318 1399 -4123 4 629 21 0 0 0 chr4 5895464 5895485 -149734635 + AT_rich Low_complexity Low_complexity 1 21 0 4 629 342 67 0 0 chr4 5895755 5895800 -149734320 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 629 495 87 0 0 chr4 5895800 5895869 -149734251 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 629 804 135 6 31 chr4 5896205 5896366 -149733754 + RLTR42-int LTR ERVK 1907 2063 -3459 4 629 3601 202 77 38 chr4 5896562 5897448 -149732672 + Lx5 LINE L1 6122 7041 -9 4 629 2587 166 69 11 chr4 5897597 5898122 -149731998 + RLTR42-int LTR ERVK 2123 2677 -2845 4 630 1130 85 16 54 chr4 5898305 5898326 -149731794 - B2_Mm2 SINE B2 -16 179 166 4 630 201 74 0 0 chr4 5898326 5898353 -149731767 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 630 1130 85 16 54 chr4 5898353 5898517 -149731603 - B2_Mm2 SINE B2 -30 165 1 4 630 742 260 45 22 chr4 5898583 5898755 -149731365 + ORR1C2 LTR MaLR 1 175 -209 4 630 1701 219 30 169 chr4 5898755 5899465 -149730655 - RMER19C LTR ERVK 0 611 1 4 630 742 260 45 22 chr4 5899465 5899516 -149730604 + ORR1C2 LTR MaLR 176 228 -156 4 630 24955 85 3 5 chr4 5899516 5903172 -149726948 + L1Md_F2 LINE L1 1938 5586 -297 4 630 7231 69 11 12 chr4 5903172 5904150 -149725970 + L1Md_F2 LINE L1 5587 6563 -19 4 630 362 308 50 17 chr4 5905056 5905348 -149724772 - L1MEf LINE L1 -2221 5774 5457 4 630 572 40 13 0 chr4 5905642 5905717 -149724403 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 630 1778 126 105 35 chr4 5905717 5906087 -149724033 - Lx LINE L1 -24 6630 6235 4 630 347 370 51 20 chr4 5906079 5906630 -149723490 - L1MC LINE L1 -1000 5146 4579 4 630 469 301 60 113 chr4 5906643 5907139 -149722981 - L1MEf LINE L1 -1581 4565 4097 4 630 243 305 76 23 chr4 5907161 5907332 -149722788 - L1MEf LINE L1 -5609 633 454 4 630 324 0 0 0 chr4 5907708 5907744 -149722376 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 630 189 0 0 0 chr4 5907832 5907853 -149722267 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 630 722 192 6 0 chr4 5908009 5908165 -149721955 + (TA)n Simple_repeat Simple_repeat 1 157 0 4 630 368 296 108 39 chr4 5908321 5908886 -149721234 - L1ME1 LINE L1 -260 5919 5316 4 630 3490 261 57 24 chr4 5908903 5909019 -149721101 - Lx7 LINE L1 -514 7182 7062 4 630 180 0 0 0 chr4 5909019 5909039 -149721081 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 630 3490 261 57 24 chr4 5909039 5909950 -149720170 - Lx7 LINE L1 -635 7061 6122 4 630 12024 160 222 28 chr4 5910540 5915159 -149714961 + Lx2 LINE L1 585 6210 -787 4 630 3692 36 73 0 chr4 5915159 5915608 -149714512 + LTRIS_Mm LTR ERV1 1 482 0 4 630 6250 129 13 11 chr4 5915608 5916052 -149714068 + Lx2 LINE L1 6211 6645 -352 4 630 962 158 115 0 chr4 5916039 5916248 -149713872 + Lx2 LINE L1 6763 6995 -2 4 630 248 380 0 0 chr4 5916336 5916436 -149713684 + CT-rich Low_complexity Low_complexity 3 102 0 4 630 227 291 34 23 chr4 5916541 5916629 -149713491 + MTE2b LTR MaLR 279 367 -12 4 630 374 314 115 29 chr4 5916684 5917010 -149713110 - L1MEa LINE L1 -4799 1679 1272 4 630 180 77 0 0 chr4 5917031 5917057 -149713063 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 630 419 252 137 25 chr4 5917289 5917566 -149712554 - L1MEa LINE L1 -5242 1130 823 4 630 363 284 144 66 chr4 5917588 5917769 -149712351 - L1MEa LINE L1 -5604 768 574 4 630 2057 191 167 51 chr4 5918140 5918674 -149711446 - RMER19B LTR ERVK 0 902 307 4 630 400 194 75 28 chr4 5918868 5918974 -149711146 + RMER19B LTR ERVK 787 897 -5 4 630 386 345 14 0 chr4 5918978 5919117 -149711003 - RMER15 LTR ERVL -42 533 393 4 630 187 280 81 47 chr4 5919452 5919538 -149710582 - MIR3 SINE MIR -39 169 81 4 630 218 200 70 0 chr4 5920487 5920587 -149709533 + (TATAA)n Simple_repeat Simple_repeat 1 107 0 4 630 517 308 77 31 chr4 5920640 5920936 -149709184 - ORR1E LTR MaLR -30 349 20 4 630 645 214 14 54 chr4 5920928 5921076 -149709044 - MTEa LTR MaLR -237 142 1 4 630 180 111 0 0 chr4 5922988 5923015 -149707105 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 630 318 95 0 0 chr4 5924361 5924403 -149705717 + RSINE1 SINE B4 79 120 -45 4 630 4384 215 65 131 chr4 5924404 5925047 -149705073 + Lx6 LINE L1 6105 6774 -686 4 630 1313 43 0 12 chr4 5925047 5925205 -149704915 + B2_Mm1t SINE B2 1 158 -35 4 630 360 0 0 0 chr4 5925205 5925245 -149704875 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 630 4384 215 65 131 chr4 5925251 5925890 -149704230 + Lx6 LINE L1 6775 7456 -4 4 630 1115 202 130 44 chr4 5926006 5926327 -149703793 + IAPEY3_LTR LTR ERVK 1 357 0 4 630 1252 86 275 154 chr4 5926327 5926683 -149703437 + MMERVK10C-int LTR ERVK 24 422 -7159 4 630 778 138 7 0 chr4 5926786 5926924 -149703196 + MMERVK10C-int LTR ERVK 708 846 -6735 4 630 694 218 91 6 chr4 5926900 5927075 -149703045 + IAPEY3-int LTR ERVK 312 501 -4905 4 630 250 255 50 20 chr4 5927210 5927310 -149702810 + IAPEY3-int LTR ERVK 1462 1564 -6017 4 630 343 158 0 0 chr4 5927329 5927386 -149702734 + IAP-d-int LTR ERVK 447 503 -6039 4 630 1313 129 107 0 chr4 5927386 5927611 -149702509 + IAP-d-int LTR ERVK 5007 5255 -1287 4 630 1565 129 50 31 chr4 5927611 5927940 -149702180 + IAPEY3-int LTR ERVK 6965 7337 -343 4 630 1201 213 55 15 chr4 5927958 5928301 -149701819 + IAPEz-int LTR ERVK 6125 6481 0 4 630 1144 204 115 37 chr4 5928309 5928605 -149701515 + IAPEY3_LTR LTR ERVK 14 332 0 4 630 437 269 9 36 chr4 5928620 5928732 -149701388 + RSINE1 SINE B4 42 150 -15 4 630 2683 96 70 0 chr4 5928733 5929117 -149701003 - RLTR10A LTR ERVK 0 411 1 4 630 247 253 38 51 chr4 5930126 5930205 -149699915 + ID4_ SINE ID 1 78 -5 4 630 704 274 52 10 chr4 5930820 5931012 -149699108 + RLTR18 LTR ERVK 1 200 -312 4 630 1007 279 64 49 chr4 5931185 5931513 -149698607 + RLTR18 LTR ERVK 282 614 -2 4 630 685 343 72 24 chr4 5931729 5932019 -149698101 - LTR16B2 LTR ERVL -150 312 9 4 630 450 0 0 0 chr4 5934487 5934537 -149695583 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 630 486 75 0 0 chr4 5934804 5934871 -149695249 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 4 630 436 233 291 33 chr4 5935488 5935639 -149694481 + B3 SINE B2 19 208 -8 4 630 1758 230 32 46 chr4 5937279 5937690 -149692430 - MTD LTR MaLR -14 405 1 4 630 1453 162 78 11 chr4 5937794 5938062 -149692058 + MTB_Mm LTR MaLR 1 286 -121 4 630 17850 85 16 8 chr4 5938063 5941310 -149688810 - L1VL4 LINE L1 -57 3502 225 4 630 551 235 6 155 chr4 5941310 5941491 -149688629 + MTB_Mm LTR MaLR 243 396 0 4 630 360 0 0 0 chr4 5941714 5941754 -149688366 + (T)n Simple_repeat Simple_repeat 1 40 0 5 630 510 136 0 0 chr4 5942198 5942279 -149687841 + MERVL_2A-int LTR ERVL 5013 5093 -668 5 630 970 168 24 14 chr4 5942264 5942476 -149687644 + MERVL_2A-int LTR ERVL 5542 5755 -6 5 630 297 267 195 24 chr4 5942476 5942567 -149687553 + MT2A LTR ERVL 390 502 -31 5 630 230 95 24 0 chr4 5942567 5942609 -149687511 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 630 297 267 195 24 chr4 5942609 5942640 -149687480 + MT2A LTR ERVL 503 533 0 5 630 270 246 0 17 chr4 5942699 5942757 -149687363 - RMER15 LTR ERVL -152 423 367 5 630 252 283 73 36 chr4 5942794 5942904 -149687216 + MTE2a LTR MaLR 263 376 -3 5 630 227 237 197 15 chr4 5943298 5943435 -149686685 - L1M5 LINE L1 -2169 3977 3816 5 630 779 309 83 40 chr4 5943672 5944144 -149685976 - Lx8 LINE L1 -34 7439 6948 5 630 384 222 58 135 chr4 5944143 5944258 -149685862 + Lx8 LINE L1 6813 6921 -552 5 630 965 140 215 0 chr4 5944258 5944444 -149685676 + URR1A DNA MER1_type 1 226 0 5 630 384 222 58 135 chr4 5944444 5944484 -149685636 + Lx8 LINE L1 6922 6956 -517 5 630 730 31 21 0 chr4 5944643 5944740 -149685380 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 5 630 423 316 68 12 chr4 5944741 5945170 -149684950 + L1MC LINE L1 4547 4999 -1147 5 630 7189 119 24 8 chr4 5945286 5947170 -149682950 - L1_Mus4 LINE L1 0 6636 4708 5 630 453 331 44 28 chr4 5947222 5947402 -149682718 - B4A SINE B4 -6 286 104 5 630 947 168 90 42 chr4 5947512 5947724 -149682396 + URR1B DNA MER1_type 1 222 -3 5 630 2731 105 46 25 chr4 5948032 5948464 -149681656 + BGLII_B LTR ERVK 1 441 0 5 630 280 358 94 10 chr4 5948865 5948961 -149681159 - B4A SINE B4 -183 109 6 5 630 263 123 35 0 chr4 5949133 5949190 -149680930 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 5 630 1112 329 66 92 chr4 5949227 5949695 -149680425 + MER82 DNA MER2_type 2 477 -176 5 630 634 139 109 0 chr4 5949695 5949832 -149680288 + Lx3_Mus LINE L1 6850 7001 -8 5 630 927 27 0 0 chr4 5949833 5949943 -149680177 + (GAGAA)n Simple_repeat Simple_repeat 3 112 0 5 630 1112 329 66 92 chr4 5949943 5950122 -149679998 + MER82 DNA MER2_type 478 634 -19 5 630 380 265 408 0 chr4 5951036 5951183 -149678937 + B3 SINE B2 4 210 -6 5 630 22 0 0 0 chr4 5951183 5951205 -149678915 + AT_rich Low_complexity Low_complexity 1 22 0 5 630 219 69 0 0 chr4 5953045 5953074 -149677046 + (TTA)n Simple_repeat Simple_repeat 2 30 0 5 630 4325 57 0 0 chr4 5953078 5953604 -149676516 - L1_Mus1 LINE L1 -2 6565 6040 5 630 421 360 7 0 chr4 5954473 5954620 -149675500 + RSINE1 SINE B4 2 149 -16 5 630 195 100 0 0 chr4 5955462 5955492 -149674628 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 630 375 41 0 0 chr4 5955492 5955541 -149674579 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 630 24 0 0 0 chr4 5955806 5955830 -149674290 + AT_rich Low_complexity Low_complexity 1 24 0 5 630 1742 251 38 3 chr4 5956536 5956927 -149673193 + MTD LTR MaLR 6 410 -9 5 630 1077 266 62 19 chr4 5956973 5957298 -149672822 + MTD-int LTR MaLR 1 339 -919 5 630 310 296 158 38 chr4 5957306 5957464 -149672656 + MER90 LTR ERV1 240 416 -159 5 630 252 360 102 62 chr4 5957572 5958537 -149671583 + L2 LINE L2 1892 2894 -525 5 630 216 0 0 0 chr4 5958559 5958583 -149671537 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 630 425 382 6 12 chr4 5958690 5958857 -149671263 - B3A SINE B2 -23 175 10 5 630 276 77 0 0 chr4 5959253 5959292 -149670828 + (A)n Simple_repeat Simple_repeat 1 39 0 5 630 280 420 34 6 chr4 5959368 5959545 -149670575 - MER58A DNA MER1_type -42 182 1 5 630 240 303 124 0 chr4 5959628 5959717 -149670403 + MER94 DNA AcHobo 34 133 -1 5 630 1699 231 65 16 chr4 5959931 5960314 -149669806 + MTD LTR MaLR 5 406 -13 5 630 233 213 0 0 chr4 5960682 5960729 -149669391 + GA-rich Low_complexity Low_complexity 2 48 0 5 630 278 118 0 0 chr4 5961657 5961724 -149668396 - MT2B LTR ERVL 0 584 467 5 630 411 173 0 0 chr4 5961724 5961805 -149668315 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 630 1080 227 64 44 chr4 5961826 5962255 -149667865 - MT2B LTR ERVL -33 568 1 5 630 393 311 76 31 chr4 5963031 5963351 -149666769 - MER57E1 LTR ERV1 0 411 13 5 630 276 300 50 65 chr4 5964279 5964418 -149665702 - ORR1D2 LTR MaLR 0 370 234 5 630 3879 138 26 44 chr4 5966543 5967288 -149662832 + L1VL1 LINE L1 409 1119 -5863 5 630 788 174 23 23 chr4 5967389 5967560 -149662560 + L1Md_F LINE L1 570 740 -5779 5 630 3139 189 35 95 chr4 5967564 5969139 -149660981 - L1Md_F LINE L1 -2199 1618 148 5 630 5227 99 100 1 chr4 5969140 5969910 -149660210 + L1_Mus3 LINE L1 5793 6638 0 5 630 207 0 0 0 chr4 5970158 5970181 -149659939 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 630 3181 79 5 0 chr4 5975641 5976058 -149654062 + BGLII LTR ERVK 1 419 -2 5 630 468 35 0 0 chr4 5977233 5977291 -149652829 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 630 414 0 0 0 chr4 5977291 5977336 -149652784 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 630 526 331 96 0 chr4 5979566 5979723 -149650397 - ORR1E LTR MaLR -187 172 1 5 630 239 179 0 0 chr4 5979766 5979805 -149650315 + MLT1J2 LTR MaLR 407 445 -3 5 630 1005 163 15 26 chr4 5981060 5981255 -149648865 - L1_Mur2 LINE L1 -346 5531 5339 5 630 280 295 0 89 chr4 5981256 5981379 -149648741 + RMER19C LTR ERVK 296 407 -204 5 630 394 235 0 0 chr4 5981363 5981444 -149648676 + RMER19C LTR ERVK 528 608 -3 5 630 2538 178 16 30 chr4 5981446 5981653 -149648467 - L1_Mur2 LINE L1 -582 5295 5097 5 630 4275 32 0 0 chr4 5981653 5982150 -149647970 - L1Md_T LINE L1 0 6582 6086 5 630 2538 178 16 30 chr4 5982150 5982509 -149647611 - L1_Mur2 LINE L1 -781 5096 4737 5 630 2734 248 37 20 chr4 5982507 5983203 -149646917 + Lx5 LINE L1 6340 7047 -3 5 630 262 301 75 0 chr4 5983749 5983842 -149646278 - PB1D10 SINE Alu -17 100 1 5 630 233 307 0 19 chr4 5984170 5984273 -149645847 + Lx7 LINE L1 7596 7696 0 5 630 34 0 0 0 chr4 5984661 5984695 -149645425 + AT_rich Low_complexity Low_complexity 1 34 0 5 630 1792 250 17 7 chr4 5985613 5986020 -149644100 + MTD LTR MaLR 1 411 -8 5 630 578 329 146 4 chr4 5986627 5986777 -149643343 - B4A SINE B4 -2 290 126 5 630 2796 52 0 88 chr4 5986777 5987177 -149642943 + RLTR10B2 LTR ERVK 1 365 0 5 630 578 329 146 4 chr4 5987177 5987279 -149642841 - B4A SINE B4 -167 125 3 5 630 898 289 51 37 chr4 5987343 5987717 -149642403 + MTEb LTR MaLR 1 379 0 5 630 1267 268 145 25 chr4 5987718 5988160 -149641960 + MTEb-int LTR MaLR 3 568 -803 5 630 375 335 57 6 chr4 5988232 5988490 -149641630 + L1M5 LINE L1 5406 5686 -476 5 630 30 45 0 0 chr4 5988943 5988987 -149641133 + AT_rich Low_complexity Low_complexity 1 44 0 5 630 3628 224 64 12 chr4 5989146 5990007 -149640113 + Lx6 LINE L1 6551 7456 -4 5 630 446 353 102 49 chr4 5990311 5990636 -149639484 + ORR1E LTR MaLR 6 347 -12 5 630 274 293 81 0 chr4 5991062 5991161 -149638959 - MLT2B1 LTR ERVL 0 567 461 5 630 393 58 0 0 chr4 5991175 5991227 -149638893 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 630 1219 275 34 38 chr4 5991456 5991902 -149638218 + Lx6 LINE L1 6978 7421 -39 5 630 1081 187 92 92 chr4 5993010 5993293 -149636827 - ORR1D1 LTR MaLR -91 283 1 5 630 281 305 120 14 chr4 5993311 5993527 -149636593 - L1MB8 LINE L1 -176 6002 5764 5 630 233 307 26 26 chr4 5993979 5994096 -149636024 - L1M5 LINE L1 -413 5766 5650 5 630 369 0 0 0 chr4 5994096 5994137 -149635983 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 630 251 325 8 95 chr4 5994284 5994410 -149635710 - Tigger5 DNA MER2_type 0 2406 2292 5 630 300 233 26 88 chr4 5994562 5994675 -149635445 - PB1D9 SINE Alu -2 118 13 5 630 1401 189 162 15 chr4 5995082 5995410 -149634710 + RMER1B Other Other 4 379 -687 5 630 329 273 0 0 chr4 5995429 5995506 -149634614 + RMER1A Other Other 17 93 -937 5 630 2190 191 61 4 chr4 5995491 5995953 -149634167 + RMER1B Other Other 579 1066 0 5 630 840 320 28 18 chr4 5996066 5996569 -149633551 + L1MD LINE L1 5310 5817 -542 5 630 1344 209 32 11 chr4 5996697 5996977 -149633143 - MTC LTR MaLR 0 421 136 5 630 572 236 235 0 chr4 5997955 5998173 -149631947 + L1_Mur3 LINE L1 299 567 -7161 5 630 3555 170 17 8 chr4 5998171 5998917 -149631203 + L1_Mur3 LINE L1 1291 2043 -3837 5 630 233 256 67 44 chr4 5998969 5999059 -149631061 - RLTR17 LTR ERVK -82 610 519 5 630 1446 211 7 20 chr4 5999051 5999351 -149630769 - RLTR17 LTR ERVK -121 571 276 5 630 488 16 16 0 chr4 5999365 5999426 -149630694 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 630 2871 50 3 0 chr4 5999469 5999812 -149630308 - ORR1A1 LTR MaLR -2 344 1 5 630 1019 137 16 16 chr4 5999815 6000000 -149630120 + L1_Mur3 LINE L1 2067 2251 -3629 5 630 12643 160 52 46 chr4 6000000 6000274 -149629846 + Lx7 LINE L1 2252 2455 -3425 1 630 5467 71 57 1 chr4 6000274 6001011 -149629109 - L1_Mus3 LINE L1 -7 6631 5854 2 630 12643 160 52 46 chr4 6001011 6003222 -149626898 + Lx7 LINE L1 2456 4718 -1162 1 630 266 0 0 29 chr4 6003222 6003257 -149626863 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 630 12643 160 52 46 chr4 6003257 6003786 -149626334 + Lx7 LINE L1 4719 5283 -597 1 630 5369 94 38 32 chr4 6003787 6004656 -149625464 + RLTR22_Mur LTR ERVK 2 875 -973 4 630 1636 94 14 102 chr4 6004839 6005122 -149624998 + RLTR22_Mur LTR ERVK 1591 1848 0 4 630 5977 197 36 12 chr4 6005122 6005992 -149624128 + Lx7 LINE L1 5279 6168 -1528 1 630 344 56 37 0 chr4 6005992 6006046 -149624074 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 5 630 5977 229 53 4 chr4 6006046 6006928 -149623192 + Lx7 LINE L1 6169 7097 -599 1 630 1470 66 0 5 chr4 6006917 6007131 -149622989 + MusHAL1 LINE L1 1721 1933 -779 6 630 613 168 34 42 chr4 6007133 6007251 -149622869 + B1_Mur2 SINE Alu 33 149 0 7 630 252 0 0 0 chr4 6007433 6007461 -149622659 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 630 582 15 0 0 chr4 6007461 6007527 -149622593 + (GA)n Simple_repeat Simple_repeat 1 67 0 9 630 400 318 171 0 chr4 6007539 6007709 -149622411 + Lx8 LINE L1 6448 6646 -827 1 630 473 307 18 12 chr4 6007709 6007868 -149622252 + ID_B1 SINE B4 56 217 -7 1 630 774 105 0 0 chr4 6007868 6007982 -149622138 + (GGGA)n Simple_repeat Simple_repeat 2 115 0 1 630 992 261 30 4 chr4 6008068 6008299 -149621821 - MTD LTR MaLR -14 405 169 1 630 25 0 0 0 chr4 6008611 6008636 -149621484 + AT_rich Low_complexity Low_complexity 1 25 0 1 630 388 256 65 70 chr4 6008708 6008893 -149621227 - RLTR23 LTR ERV1 0 430 247 1 630 365 276 51 0 chr4 6009309 6009407 -149620713 - RSINE1 SINE B4 -61 104 2 1 630 393 391 8 0 chr4 6009441 6009574 -149620546 - ID_B1 SINE B4 -2 222 89 1 630 258 158 0 0 chr4 6009633 6009671 -149620449 - RSINE1 SINE B4 -49 116 79 1 630 1680 177 129 0 chr4 6009677 6010033 -149620087 - MTD LTR MaLR 0 419 18 1 630 207 0 0 0 chr4 6010034 6010057 -149620063 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 630 256 254 62 16 chr4 6010061 6010125 -149619995 - RSINE1 SINE B4 -93 72 6 1 630 416 148 11 22 chr4 6010353 6010443 -149619677 + L1_Mus4 LINE L1 6533 6621 -15 2 630 723 24 0 0 chr4 6010448 6010533 -149619587 + (GGAAA)n Simple_repeat Simple_repeat 3 87 0 2 630 21 36 0 0 chr4 6010970 6010998 -149619122 + AT_rich Low_complexity Low_complexity 1 28 0 2 630 968 235 74 58 chr4 6012168 6012533 -149617587 - RMER17C LTR ERVK -32 378 8 2 630 276 260 0 0 chr4 6012804 6012881 -149617239 + (CTATA)n Simple_repeat Simple_repeat 3 79 0 2 630 614 301 86 148 chr4 6012897 6013394 -149616726 + MER44B DNA MER2_type 75 541 -9 2 630 347 303 30 0 chr4 6014410 6014509 -149615611 - MTE2a LTR MaLR -48 331 230 2 630 7244 74 1 0 chr4 6014575 6015718 -149614402 - L1_Mus1 LINE L1 -1 6566 5423 2 630 6805 111 10 8 chr4 6016123 6017725 -149612395 - L1VL4 LINE L1 -1615 1944 339 2 630 396 276 131 43 chr4 6018059 6018433 -149611687 + L1MA5 LINE L1 5644 6050 -250 3 630 213 180 0 62 chr4 6018440 6018505 -149611615 + T-rich Low_complexity Low_complexity 4 64 0 3 630 2199 117 62 14 chr4 6018788 6019144 -149610976 + MTC LTR MaLR 1 373 -48 3 630 34 24 0 0 chr4 6020045 6020086 -149610034 + AT_rich Low_complexity Low_complexity 1 41 0 3 630 568 326 0 0 chr4 6020109 6020247 -149609873 + B1F SINE Alu 10 147 -2 3 630 2532 114 47 3 chr4 6020423 6020809 -149609311 - RLTR9D LTR ERVK 0 403 1 3 630 733 276 113 47 chr4 6022831 6023131 -149606989 + MER2 DNA MER2_type 2 321 -24 3 630 564 15 0 0 chr4 6023148 6023213 -149606907 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 630 645 258 39 117 chr4 6024622 6024828 -149605292 + B3 SINE B2 6 204 -12 3 630 431 235 19 170 chr4 6025507 6025666 -149604454 + MTD LTR MaLR 284 418 -1 3 78 11314 138 25 81 chr4 6025730 6029617 -149600503 + Lx2 LINE L1 356 3883 -2000 4 631 2987 29 0 0 chr4 6029617 6029963 -149600157 + ORR1A0 LTR MaLR 1 346 0 4 631 9635 183 21 160 chr4 6029963 6032717 -149597403 + Lx2 LINE L1 3884 6053 -944 4 631 592 198 50 0 chr4 6032729 6032850 -149597270 + ETnERV2-int LTR ERVK 7070 7196 -210 4 631 3280 111 31 4 chr4 6033243 6033758 -149596362 + Lx2 LINE L1 6116 6644 -353 4 631 1195 141 0 0 chr4 6033769 6033961 -149596159 + Lx2 LINE L1 6806 6997 0 4 631 21 71 0 0 chr4 6034033 6034075 -149596045 + AT_rich Low_complexity Low_complexity 1 42 0 4 631 762 186 28 21 chr4 6034438 6034581 -149595539 - B1_Mur3 SINE Alu -5 144 1 4 631 22 0 0 0 chr4 6034634 6034656 -149595464 + AT_rich Low_complexity Low_complexity 1 22 0 4 631 232 294 15 0 chr4 6034755 6034823 -149595297 + ID4_ SINE ID 1 69 -14 4 631 540 45 0 0 chr4 6035401 6035468 -149594652 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 631 32 26 0 0 chr4 6035862 6035901 -149594219 + AT_rich Low_complexity Low_complexity 1 39 0 4 631 207 0 0 0 chr4 6036001 6036024 -149594096 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 631 3889 135 17 10 chr4 6036937 6037534 -149592586 + Lx4A LINE L1 6455 7055 -3 5 631 188 194 0 0 chr4 6038100 6038136 -149591984 + L2 LINE L2 1276 1311 -2108 5 631 391 275 119 0 chr4 6038356 6038465 -149591655 + B3A SINE B2 4 125 -73 5 631 10683 199 23 172 chr4 6038467 6039581 -149590539 + L1_Mur1 LINE L1 2291 3085 -2801 5 631 963 125 0 22 chr4 6039581 6039761 -149590359 + (GGAA)n Simple_repeat Simple_repeat 1 176 0 5 631 10683 199 23 172 chr4 6039761 6041094 -149589026 + L1_Mur1 LINE L1 3086 4409 -1477 5 631 1119 208 128 36 chr4 6041094 6041398 -149588722 - IAPEY3_LTR LTR ERVK 0 332 1 5 631 10683 199 23 172 chr4 6041398 6041628 -149588492 + L1_Mur1 LINE L1 4410 4639 -1247 5 631 194 0 39 0 chr4 6041628 6041654 -149588466 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 631 10683 199 23 172 chr4 6041654 6042894 -149587226 + L1_Mur1 LINE L1 4640 5884 -2 5 631 4206 172 66 25 chr4 6042914 6043781 -149586339 - RLTR13D6 LTR ERVK 0 902 1 5 631 3837 228 95 25 chr4 6043781 6044858 -149585262 + Lx5 LINE L1 5898 7049 -1 5 631 875 290 54 15 chr4 6044868 6045274 -149584846 + L1MA4 LINE L1 5505 5926 -374 5 631 935 274 21 56 chr4 6045437 6045723 -149584397 + B4A SINE B4 10 285 -7 6 631 1281 202 18 77 chr4 6046662 6047210 -149582910 + L1_Mur2 LINE L1 888 1394 -4483 6 631 448 199 52 46 chr4 6048165 6048318 -149581802 + Lx4B LINE L1 6903 7056 -2 6 631 5661 183 124 21 chr4 6048521 6048959 -149581161 + L1_Mur2 LINE L1 1397 2057 -3823 6 631 525 16 0 0 chr4 6048959 6049021 -149581099 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 631 5661 180 41 25 chr4 6049021 6050323 -149579797 + L1_Mur2 LINE L1 2058 3394 -2486 6 631 5803 180 38 11 chr4 6050320 6051638 -149578482 + L1_Mur2 LINE L1 3955 5307 -570 6 631 1465 58 0 25 chr4 6051640 6051836 -149578284 - MTB_Mm LTR MaLR -216 191 1 6 631 3955 128 10 110 chr4 6051836 6052633 -149577487 - MTB_Mm-int LTR MaLR 0 1098 382 6 631 6943 70 12 3 chr4 6052633 6053609 -149576511 - L1Md_F2 LINE L1 0 6582 5607 6 631 6891 67 4 2 chr4 6053608 6054556 -149575564 + L1Md_F2 LINE L1 4610 5559 -324 6 631 2508 121 5 1 chr4 6054556 6054956 -149575164 - MTB-int LTR MaLR -707 391 1 6 631 2778 107 18 0 chr4 6054956 6055347 -149574773 - MTB LTR MaLR 0 400 3 6 631 192 111 0 0 chr4 6055392 6055428 -149574692 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 631 396 0 0 0 chr4 6055521 6055565 -149574555 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 631 519 17 0 0 chr4 6055565 6055624 -149574496 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 631 257 206 14 68 chr4 6055675 6055748 -149574372 + L1_Mur3 LINE L1 2709 2777 -3103 7 631 435 279 188 56 chr4 6055768 6056147 -149573973 + L1M2 LINE L1 3695 4146 -1997 7 631 5022 124 26 95 chr4 6056147 6057120 -149573000 - RMER17A2 LTR ERVK 0 906 1 7 631 499 272 182 60 chr4 6057120 6057362 -149572758 + L1M2 LINE L1 4147 4392 -1751 7 631 387 0 0 0 chr4 6057398 6057441 -149572679 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 631 317 222 18 36 chr4 6057495 6057607 -149572513 + L1M2 LINE L1 4541 4650 -1490 7 631 486 261 95 27 chr4 6057702 6057997 -149572123 - L1MC1 LINE L1 -316 6017 5703 7 631 297 274 51 95 chr4 6058148 6058285 -149571835 + ORR1E LTR MaLR 61 191 -168 7 631 451 262 57 28 chr4 6058472 6058684 -149571436 - L1MC1 LINE L1 -2049 5736 5519 7 631 8103 128 30 10 chr4 6058759 6060115 -149570005 + Lx4A LINE L1 5676 7058 0 7 631 440 271 44 8 chr4 6060131 6060405 -149569715 - L1MC1 LINE L1 -2564 5431 5141 7 631 305 300 0 0 chr4 6060710 6060780 -149569340 + ID4_ SINE ID 1 70 -13 7 631 180 238 0 0 chr4 6060824 6060908 -149569212 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 631 298 242 30 0 chr4 6062393 6062459 -149567661 + BC1_Mm scRNA scRNA 19 86 -66 7 631 558 280 28 19 chr4 6063318 6063533 -149566587 - MuRRS4-int LTR ERV1 -1918 3145 2929 8 631 767 328 48 15 chr4 6063955 6064581 -149565539 - MuRRS4-int LTR ERV1 -5731 1825 1162 8 631 265 294 27 27 chr4 6065087 6065199 -149564921 - MuRRS4-int LTR ERV1 -6858 698 587 8 631 795 129 133 19 chr4 6065738 6065896 -149564224 - RLTR47_MM LTR ERV1 -1 531 356 8 631 253 199 21 0 chr4 6066196 6066254 -149563866 + MTC LTR MaLR 1 60 -336 8 631 470 217 16 0 chr4 6067311 6067440 -149562680 + L1_Mur2 LINE L1 892 1022 -6706 8 631 12797 92 25 16 chr4 6067439 6070020 -149560100 + L1VL2 LINE L1 380 2983 -632 8 631 210 118 0 0 chr4 6070208 6070242 -149559878 + (T)n Simple_repeat Simple_repeat 1 34 0 8 631 6922 81 6 3 chr4 6070247 6071315 -149558805 - L1Md_F2 LINE L1 -13 6569 5497 8 631 21 0 0 0 chr4 6071574 6071595 -149558525 + AT_rich Low_complexity Low_complexity 1 21 0 8 631 1169 192 36 48 chr4 6071609 6072154 -149557966 + L1_Mur2 LINE L1 939 1468 -4409 8 631 2971 154 101 16 chr4 6072151 6072763 -149557357 + Lx2 LINE L1 6333 6996 -1 8 631 747 157 70 0 chr4 6072782 6072954 -149557166 + L1_Mur2 LINE L1 1429 1612 -4268 8 631 28601 87 39 9 chr4 6072953 6078007 -149552113 + L1Md_F2 LINE L1 382 5586 -297 8 631 7529 69 6 6 chr4 6078007 6079001 -149551119 + L1Md_F2 LINE L1 5587 6580 -2 8 631 2264 58 0 0 chr4 6079001 6079294 -149550826 + L1Md_F2 LINE L1 5294 5586 -297 9 631 7131 85 4 15 chr4 6079294 6080297 -149549823 + L1Md_F2 LINE L1 5587 6578 -4 9 631 1657 204 68 2 chr4 6080300 6080771 -149549349 + L1_Mur2 LINE L1 1600 2101 -3779 8 631 9021 60 0 0 chr4 6080782 6081973 -149548147 + L1Md_F2 LINE L1 4396 5586 -297 9 631 8163 45 1 1 chr4 6081973 6082969 -149547151 + L1Md_F2 LINE L1 5587 6582 0 9 631 1621 199 26 3 chr4 6082998 6083380 -149546740 + L1_Mur2 LINE L1 2083 2473 -3404 8 631 1064 199 15 24 chr4 6083380 6083586 -149546534 - MTD LTR MaLR -209 210 7 9 631 1629 152 96 99 chr4 6083674 6084068 -149546052 - RLTR9C LTR ERVK 0 393 1 9 631 512 80 0 0 chr4 6084069 6084144 -149545976 - ETnERV2-int LTR ERVK -1 7405 7331 9 631 3938 175 42 36 chr4 6084361 6086368 -149543752 - ETnERV2-int LTR ERVK -3321 4085 2356 9 631 939 149 20 24 chr4 6086906 6087097 -149543023 - RLTR13D1 LTR ERVK -169 854 490 9 631 2201 171 66 7 chr4 6087097 6087549 -149542571 - ETnERV2-int LTR ERVK -4432 2974 2496 9 631 4028 181 36 93 chr4 6087582 6088816 -149541304 - MMETn-int LTR ERVK -3681 1163 1 9 631 1921 154 36 62 chr4 6088817 6089205 -149540915 - RLTR9C LTR ERVK 0 393 16 9 631 1844 158 11 24 chr4 6089243 6089612 -149540508 + L1_Mur2 LINE L1 2488 2851 -3029 8 631 249 204 18 36 chr4 6089614 6089670 -149540450 + RMER12 LTR ERVK 20 74 -1248 9 631 826 244 225 40 chr4 6089674 6090003 -149540117 + RMER12 LTR ERVK 761 1150 -172 9 631 630 162 7 7 chr4 6090138 6090275 -149539845 + L1_Mur2 LINE L1 2860 2996 -2881 8 631 441 0 0 0 chr4 6090279 6090328 -149539792 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 9 631 462 36 0 0 chr4 6090330 6090386 -149539734 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 9 631 6951 57 32 6 chr4 6090709 6091614 -149538506 - RLTR13B3 LTR ERVK 0 929 1 9 631 283 241 0 33 chr4 6091759 6091819 -149538301 - B1F1 SINE Alu -5 144 87 1 631 866 109 0 7 chr4 6091845 6091983 -149538137 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 1 631 7769 173 49 27 chr4 6091985 6092841 -149537279 + L1_Mur2 LINE L1 3001 3853 -2027 8 631 525 32 0 0 chr4 6092841 6092904 -149537216 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 631 7769 173 49 27 chr4 6092904 6093890 -149536230 + L1_Mur2 LINE L1 3854 4884 -996 8 631 23 0 0 0 chr4 6094345 6094368 -149535752 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 31 0 0 0 chr4 6094580 6094611 -149535509 + AT_rich Low_complexity Low_complexity 1 31 0 1 631 3349 63 14 0 chr4 6095253 6095682 -149534438 - L1_Mus3 LINE L1 0 6638 6204 1 631 293 73 0 0 chr4 6096244 6096285 -149533835 + RLTR42-int LTR ERVK 1936 1976 -3546 1 631 266 157 13 103 chr4 6096367 6096445 -149533675 + RLTR15 LTR ERVK 33 103 -256 1 631 23 0 0 0 chr4 6096636 6096659 -149533461 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 408 77 50 25 chr4 6096724 6096804 -149533316 + RLTR42-int LTR ERVK 2011 2092 -3430 1 631 486 230 103 7 chr4 6096822 6096958 -149533162 + MYSERV6-int LTR ERVK 7172 7320 -1639 1 631 701 160 97 22 chr4 6096964 6097098 -149533022 + B1_Mus1 SINE Alu 5 148 0 1 631 760 124 93 9 chr4 6097120 6097274 -149532846 + B2_Mm2 SINE B2 1 162 -31 1 631 462 36 0 0 chr4 6097350 6097406 -149532714 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 631 1997 121 13 3 chr4 6097416 6097730 -149532390 - Lx4B LINE L1 -422 6636 6320 1 631 1993 138 10 35 chr4 6097712 6098109 -149532011 + Lx4B LINE L1 6622 7008 -50 1 631 23 0 0 0 chr4 6098124 6098147 -149531973 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 395 234 234 22 chr4 6098165 6098396 -149531724 + MYSERV6-int LTR ERVK 7329 7505 -1454 1 631 222 156 0 0 chr4 6098841 6098886 -149531234 + A-rich Low_complexity Low_complexity 1 45 0 1 631 1305 103 16 0 chr4 6099589 6099773 -149530347 - B2_Mm2 SINE B2 -8 187 1 1 631 478 352 66 77 chr4 6099913 6100276 -149529844 - ORR1E LTR MaLR 0 359 1 1 631 401 316 101 35 chr4 6100489 6100814 -149529306 + MLT1B LTR MaLR 1 373 -17 1 631 2512 265 74 58 chr4 6101347 6102256 -149527864 - RCHARR1 DNA MER1_type -7 967 45 1 631 1880 126 63 30 chr4 6102344 6102679 -149527441 - ORR1B1 LTR MaLR -8 386 41 1 631 609 14 0 0 chr4 6102827 6102897 -149527223 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1 631 501 309 56 56 chr4 6102917 6103133 -149526987 + MER44C DNA MER2_type 70 285 -448 1 631 309 317 39 0 chr4 6103665 6103769 -149526351 + MER44C DNA MER2_type 300 407 -326 1 631 335 23 0 22 chr4 6104194 6104239 -149525881 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 631 34569 50 2 5 chr4 6104239 6109571 -149520549 - L1Md_F3 LINE L1 -23 6561 1247 1 631 501 258 38 19 chr4 6109991 6110149 -149519971 - RSINE1 SINE B4 -2 163 3 1 631 23 68 0 0 chr4 6110273 6110317 -149519803 + AT_rich Low_complexity Low_complexity 1 44 0 1 631 545 226 115 31 chr4 6110412 6110604 -149519516 + B3 SINE B2 5 212 -4 1 631 332 355 70 11 chr4 6110624 6110809 -149519311 + L1M5 LINE L1 3559 3754 -2392 1 631 21 0 0 0 chr4 6110907 6110928 -149519192 + AT_rich Low_complexity Low_complexity 1 21 0 1 631 2435 112 22 0 chr4 6111671 6111993 -149518127 + ORR1A4 LTR MaLR 1 329 0 1 631 182 342 90 66 chr4 6112024 6112190 -149517930 - L2 LINE L2 -927 2492 2323 1 631 1801 261 97 10 chr4 6112276 6112780 -149517340 - MER82 DNA MER2_type -105 548 1 1 631 343 357 28 28 chr4 6113057 6113233 -149516887 + MIRb SINE MIR 29 204 -64 1 631 17767 90 14 6 chr4 6113732 6115637 -149514483 + L1_Mm LINE L1 2815 4730 -1153 1 631 216 0 0 0 chr4 6115637 6115661 -149514459 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 631 17767 90 14 6 chr4 6115661 6116227 -149513893 + L1_Mm LINE L1 4731 5300 -583 1 631 3818 55 42 17 chr4 6116227 6116704 -149513416 + L1_Mus1 LINE L1 6079 6567 0 1 631 17767 90 14 6 chr4 6116704 6116722 -149513398 + L1_Mm LINE L1 5301 5323 -560 1 631 236 259 48 32 chr4 6117225 6117323 -149512797 - LTR48B LTR ERV1 -20 624 460 1 631 1899 179 89 5 chr4 6119307 6119688 -149510432 - MTC LTR MaLR -8 413 1 1 631 432 61 73 0 chr4 6119936 6120018 -149510102 + (CAAAA)n Simple_repeat Simple_repeat 2 89 0 1 631 268 269 127 18 chr4 6120436 6120546 -149509574 - MER5A DNA MER1_type -35 154 33 1 631 1681 62 19 19 chr4 6120840 6121055 -149509065 + L1_Mus1 LINE L1 6353 6567 0 1 631 426 303 196 50 chr4 6121275 6121515 -149508605 - MTEa LTR MaLR -104 275 1 1 631 777 199 20 14 chr4 6122728 6122876 -149507244 - B1_Mur4 SINE Alu -1 149 1 1 631 1403 67 56 6 chr4 6124140 6124320 -149505800 + B2_Mm2 SINE B2 2 190 -5 1 631 27 0 0 0 chr4 6124559 6124586 -149505534 + AT_rich Low_complexity Low_complexity 1 27 0 1 631 692 303 67 0 chr4 6125005 6125259 -149504861 - L1MC4 LINE L1 -476 7566 7296 1 631 437 183 14 0 chr4 6125623 6125694 -149504426 + ID4_ SINE ID 2 73 -10 1 631 437 237 59 8 chr4 6126164 6126283 -149503837 - B1F1 SINE Alu -16 133 9 1 631 808 208 23 0 chr4 6126316 6126489 -149503631 + MTD LTR MaLR 5 181 -238 1 631 219 36 0 0 chr4 6126602 6126630 -149503490 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 631 243 0 0 0 chr4 6127144 6127171 -149502949 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 631 543 284 0 56 chr4 6127211 6127353 -149502767 + ID_B1 SINE B4 80 213 -11 1 631 258 345 162 20 chr4 6127854 6128058 -149502062 + L1M5 LINE L1 4821 5053 -1093 1 631 207 0 0 0 chr4 6128755 6128778 -149501342 + (T)n Simple_repeat Simple_repeat 1 23 0 1 631 1055 39 0 0 chr4 6128778 6128907 -149501213 - B1_Mus1 SINE Alu 0 148 20 1 631 572 290 153 3 chr4 6129977 6130351 -149499769 + Lx9 LINE L1 6878 7438 -206 1 631 222 37 0 0 chr4 6130360 6130387 -149499733 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 631 36 23 0 0 chr4 6130501 6130544 -149499576 + AT_rich Low_complexity Low_complexity 1 43 0 1 631 484 294 9 0 chr4 6130596 6130705 -149499415 - RSINE1 SINE B4 0 165 56 1 631 189 107 0 0 chr4 6131671 6131699 -149498421 + (T)n Simple_repeat Simple_repeat 1 28 0 1 631 520 325 68 5 chr4 6131943 6132135 -149497985 - B4 SINE B4 -84 208 5 1 631 1231 141 16 16 chr4 6132308 6132495 -149497625 - B2_Mm2 SINE B2 -8 187 1 1 631 1210 202 101 59 chr4 6132589 6132926 -149497194 - ORR1D1 LTR MaLR -20 354 4 1 631 1982 174 45 54 chr4 6132929 6133354 -149496766 - ORR1D1-int LTR MaLR 0 1370 950 1 631 255 125 0 0 chr4 6133354 6133394 -149496726 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 631 1596 223 136 26 chr4 6133397 6133853 -149496267 - ORR1D1-int LTR MaLR -378 992 487 1 631 543 262 7 28 chr4 6135145 6135290 -149494830 + Lx7 LINE L1 5612 5753 -1943 1 631 204 240 0 0 chr4 6135369 6135419 -149494701 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 631 342 211 228 31 chr4 6135681 6135808 -149494312 + B3 SINE B2 52 203 -13 1 631 367 303 48 95 chr4 6136301 6136469 -149493651 + B3A SINE B2 25 184 -11 1 631 414 0 0 0 chr4 6136779 6136825 -149493295 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 631 206 213 197 0 chr4 6136840 6136901 -149493219 + L3 LINE CR1 959 1031 -3458 1 631 705 186 3 0 chr4 6137369 6137498 -149492622 - L1_Mm LINE L1 -1170 4973 4819 1 631 2087 119 32 6 chr4 6137499 6137846 -149492274 + L1_Mur2 LINE L1 4937 5292 -585 1 631 1398 37 0 0 chr4 6137850 6138011 -149492109 + L1Md_F2 LINE L1 5607 5767 -815 1 631 4663 93 19 42 chr4 6138011 6138683 -149491437 + Lx LINE L1 5997 6653 -1 1 631 3491 38 8 0 chr4 6139442 6139835 -149490285 + MTA_Mm LTR MaLR 1 396 0 1 631 744 258 101 11 chr4 6139960 6140148 -149489972 + B3 SINE B2 2 206 -10 1 631 1210 82 0 0 chr4 6140585 6140732 -149489388 + B1_Mus2 SINE Alu 1 147 0 1 631 354 226 43 113 chr4 6142603 6142718 -149487402 - PB1D7 SINE Alu 0 120 14 1 631 222 344 53 11 chr4 6142642 6142736 -149487384 - ID_B1 SINE B4 -52 172 75 1 631 450 0 0 0 chr4 6144615 6144665 -149485455 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 631 538 273 233 4 chr4 6145170 6145402 -149484718 - B4A SINE B4 -6 286 2 1 631 275 323 97 0 chr4 6145530 6145685 -149484435 - MLT1-int LTR MaLR -807 564 395 1 631 763 170 28 49 chr4 6145846 6145988 -149484132 - B1_Mur1 SINE Alu 0 149 11 1 631 285 269 60 77 chr4 6145887 6146004 -149484116 - MT2B LTR ERVL -332 269 155 1 631 302 306 132 35 chr4 6146303 6146560 -149483560 + B4A SINE B4 4 285 -7 1 631 303 28 0 0 chr4 6147429 6147465 -149482655 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 631 327 305 98 70 chr4 6152151 6152368 -149477752 + B4 SINE B4 65 286 -6 1 631 7396 93 8 26 chr4 6153159 6153237 -149476883 - L1_Mus4 LINE L1 -6 6630 6555 1 631 1548 69 16 0 chr4 6153237 6153426 -149476694 + B2_Mm1t SINE B2 1 192 -1 1 631 7396 93 8 26 chr4 6153426 6153942 -149476178 - L1_Mus4 LINE L1 -82 6554 6055 1 631 3488 74 11 20 chr4 6153942 6154395 -149475725 - RLTR44B LTR ERVK 0 449 1 1 631 7396 114 27 14 chr4 6154395 6155244 -149474876 - L1_Mus4 LINE L1 -582 6054 5176 1 631 363 366 88 70 chr4 6155365 6155862 -149474258 - MLT2B1 LTR ERVL -10 510 5 1 631 822 281 63 11 chr4 6155965 6156235 -149473885 + L1MA9 LINE L1 5632 5915 -397 1 631 296 279 125 38 chr4 6156376 6156536 -149473584 + L1MA9 LINE L1 6094 6267 -24 1 631 486 0 0 0 chr4 6156830 6156884 -149473236 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 631 243 0 0 0 chr4 6156884 6156910 -149473210 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 631 276 313 37 37 chr4 6157213 6157349 -149472771 + L1MC4 LINE L1 6773 6908 -1134 1 631 227 287 64 35 chr4 6157622 6157763 -149472357 + L1MC4 LINE L1 7118 7262 -780 1 631 183 129 0 0 chr4 6158002 6158033 -149472087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 631 235 255 142 90 chr4 6158944 6159177 -149470943 + RMER21A LTR ERV1 440 684 -263 1 631 2102 167 98 12 chr4 6159375 6159781 -149470339 - RMER15 LTR ERVL -84 491 51 1 631 1584 130 8 0 chr4 6159750 6159988 -149470132 + ORR1A0 LTR MaLR 107 346 0 2 631 200 212 0 70 chr4 6160246 6160317 -149469803 + T-rich Low_complexity Low_complexity 5 70 0 2 632 4254 178 46 39 chr4 6160758 6161069 -149469051 + Lx5 LINE L1 6146 6457 -593 2 632 4426 98 18 21 chr4 6161069 6161682 -149468438 - L1_Mus4 LINE L1 -4 6632 6022 2 632 4254 178 46 39 chr4 6161682 6162269 -149467851 + Lx5 LINE L1 6458 7050 0 2 632 4133 97 9 2 chr4 6162596 6163272 -149466848 - L1_Mus4 LINE L1 -698 5938 5255 2 632 5076 89 28 1 chr4 6163272 6163943 -149466177 + L1_Mus4 LINE L1 5944 6632 -4 2 632 1210 95 0 0 chr4 6164095 6164243 -149465877 + B1_Mus1 SINE Alu 1 148 0 2 632 225 0 0 0 chr4 6164243 6164268 -149465852 + (A)n Simple_repeat Simple_repeat 1 25 0 2 632 375 235 20 30 chr4 6164270 6164371 -149465749 + ORR1D2 LTR MaLR 220 319 -51 2 632 27 0 0 0 chr4 6164371 6164398 -149465722 + AT_rich Low_complexity Low_complexity 1 27 0 2 632 1148 271 49 29 chr4 6164608 6164958 -149465162 + ORR1E LTR MaLR 3 359 0 2 632 1281 134 5 15 chr4 6165619 6165816 -149464304 - B2_Mm2 SINE B2 0 195 1 2 632 2405 219 144 3 chr4 6167335 6168058 -149462062 - Lx5 LINE L1 -4 7046 6221 2 632 227 267 17 0 chr4 6168989 6169049 -149461071 + CT-rich Low_complexity Low_complexity 1 61 0 2 632 269 171 0 0 chr4 6169060 6169101 -149461019 + polypurine Low_complexity Low_complexity 4 44 0 2 632 1014 110 11 6 chr4 6169101 6169275 -149460845 + (GGAGA)n Simple_repeat Simple_repeat 3 177 0 2 632 325 92 19 90 chr4 6169280 6169436 -149460684 + GA-rich Low_complexity Low_complexity 6 150 0 2 632 840 111 14 7 chr4 6169433 6169578 -149460542 + (GAAAA)n Simple_repeat Simple_repeat 5 150 0 2 632 410 254 59 45 chr4 6169587 6169769 -149460351 + B4A SINE B4 1 189 -103 2 632 730 303 47 11 chr4 6170340 6170704 -149459416 - L1M2 LINE L1 -488 5803 5427 2 632 685 172 0 13 chr4 6170708 6170861 -149459259 + CT-rich Low_complexity Low_complexity 2 152 0 2 632 281 142 0 55 chr4 6170863 6170927 -149459193 - B1_Mus2 SINE Alu -6 141 54 2 632 327 229 27 9 chr4 6170930 6171040 -149459080 - L1M2 LINE L1 -872 5419 5308 2 632 420 20 0 0 chr4 6171051 6171100 -149459020 + (TTAG)n Simple_repeat Simple_repeat 2 50 0 2 632 368 293 147 0 chr4 6171101 6171217 -149458903 - B1F SINE Alu -15 134 2 2 632 447 199 123 19 chr4 6171222 6171376 -149458744 - L1M2 LINE L1 -837 5303 5134 2 632 414 0 0 0 chr4 6171592 6171638 -149458482 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 632 929 277 107 26 chr4 6171668 6171996 -149458124 - L1M2 LINE L1 -1089 5054 4692 2 632 1142 69 0 0 chr4 6171996 6172141 -149457979 - B1_Mus2 SINE Alu -1 146 2 2 632 929 277 107 26 chr4 6172141 6172468 -149457652 - L1M2 LINE L1 -1452 4691 4346 2 632 233 325 150 0 chr4 6173890 6174010 -149456110 - MIR SINE MIR -79 183 46 2 632 286 375 93 39 chr4 6174121 6174211 -149455909 + MLT1F1 LTR MaLR 8 107 -453 2 632 406 324 14 14 chr4 6174211 6174355 -149455765 - B1F SINE Alu -2 147 4 2 632 309 319 188 37 chr4 6174355 6174714 -149455406 + MLT1F1 LTR MaLR 108 540 -29 2 632 252 273 0 29 chr4 6175036 6175104 -149455016 + CT-rich Low_complexity Low_complexity 3 68 0 2 632 2008 225 90 4 chr4 6175236 6175727 -149454393 - MT2A LTR ERVL 0 533 1 2 632 661 286 27 30 chr4 6175735 6175998 -149454122 + Lx8 LINE L1 6105 6366 -1107 2 632 1504 233 74 6 chr4 6175998 6176172 -149453948 + ORR1D1 LTR MaLR 1 179 -195 2 632 183 80 0 0 chr4 6176172 6176197 -149453923 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 632 1504 233 74 6 chr4 6176197 6176372 -149453748 + ORR1D1 LTR MaLR 180 373 -1 2 632 1634 279 130 7 chr4 6176372 6177143 -149452977 + Lx8 LINE L1 6362 7227 -246 2 632 21 71 0 0 chr4 6177286 6177328 -149452792 + AT_rich Low_complexity Low_complexity 1 42 0 2 632 29112 111 13 1 chr4 6177328 6183440 -149446680 - L1_Mus1 LINE L1 -3 6651 387 2 632 1053 70 0 14 chr4 6183479 6183624 -149446496 + B1_Mm SINE Alu 1 143 -4 2 632 360 0 0 0 chr4 6183625 6183665 -149446455 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2 632 682 308 19 9 chr4 6183845 6184055 -149446065 - B3 SINE B2 0 216 5 2 632 4893 23 0 0 chr4 6184527 6185087 -149445033 + L1Md_A LINE L1 6021 6580 -2 2 632 444 163 0 0 chr4 6185103 6185189 -149444931 + GA-rich Low_complexity Low_complexity 4 89 0 2 632 541 144 0 25 chr4 6186145 6186302 -149443818 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 2 632 967 259 93 9 chr4 6186386 6186814 -149443306 - L1MA9 LINE L1 -280 6032 5569 2 632 624 261 85 44 chr4 6186793 6187229 -149442891 - L1MA9 LINE L1 -1239 4901 4448 2 632 412 339 60 68 chr4 6187429 6187679 -149442441 + ORR1E LTR MaLR 9 256 -103 2 632 868 168 249 0 chr4 6188546 6188719 -149441401 + B3 SINE B2 1 216 0 2 632 265 263 58 39 chr4 6188847 6188950 -149441170 - MLT1A1 LTR MaLR -10 398 294 2 632 267 211 15 41 chr4 6189091 6189183 -149440937 - MTEb LTR MaLR -27 352 268 2 632 312 27 0 0 chr4 6190659 6190696 -149439424 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 2 632 180 271 16 78 chr4 6192156 6192220 -149437900 + MIRb SINE MIR 36 95 -173 2 632 358 250 157 8 chr4 6192952 6193073 -149437047 + B4A SINE B4 148 286 -6 2 632 478 306 55 37 chr4 6193154 6193371 -149436749 - MER58B DNA MER1_type -116 225 5 2 632 37 81 0 0 chr4 6194058 6194144 -149435976 + AT_rich Low_complexity Low_complexity 1 86 0 2 632 764 98 40 15 chr4 6194301 6194458 -149435662 + RMER17B LTR ERVK 312 502 -387 2 632 599 232 32 0 chr4 6194582 6194707 -149435413 - B1_Mur1 SINE Alu 0 149 21 2 632 898 281 0 0 chr4 6196490 6196693 -149433427 - B3 SINE B2 -12 204 2 2 632 201 167 28 0 chr4 6196757 6196793 -149433327 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 632 904 131 215 62 chr4 6196896 6197091 -149433029 + URR1B DNA MER1_type 1 225 0 2 632 670 214 95 78 chr4 6197610 6197853 -149432267 - RMER1B Other Other -3 1063 817 2 632 323 313 12 0 chr4 6201518 6201601 -149428519 + BC1_Mm scRNA scRNA 2 85 -67 2 632 207 100 0 0 chr4 6202878 6202908 -149427212 + (A)n Simple_repeat Simple_repeat 1 30 0 2 632 223 67 43 22 chr4 6203261 6203307 -149426813 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 2 632 332 208 14 0 chr4 6203574 6203646 -149426474 - ID2 SINE ID -10 73 1 2 632 239 331 74 8 chr4 6203655 6203777 -149426343 - L2a LINE L2 -13 3413 3284 2 632 186 309 203 55 chr4 6203822 6204024 -149426096 - L2a LINE L2 -252 3174 2943 2 632 286 362 63 21 chr4 6204131 6204368 -149425752 - L2a LINE L2 -991 2428 2182 2 632 189 0 0 0 chr4 6204416 6204437 -149425683 + (TTA)n Simple_repeat Simple_repeat 3 23 0 2 632 608 175 181 0 chr4 6204485 6204645 -149425475 - B2_Mm2 SINE B2 -5 190 2 2 632 459 0 0 0 chr4 6205674 6205725 -149424395 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 632 239 359 39 10 chr4 6205729 6205833 -149424287 - L2b LINE L2 -28 3347 3241 2 632 544 196 166 25 chr4 6206054 6206211 -149423909 + B3A SINE B2 3 181 -17 2 632 1176 6 34 17 chr4 6206403 6206579 -149423541 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 632 319 267 20 103 chr4 6206929 6206944 -149423176 + MT2B2 LTR ERVL 150 152 -432 2 632 657 267 7 7 chr4 6206944 6207091 -149423029 + B1F1 SINE Alu 3 149 0 2 632 189 271 100 0 chr4 6207300 6207370 -149422750 - L2a LINE L2 -17 3409 3333 2 632 315 182 0 0 chr4 6207771 6207848 -149422272 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 2 632 473 306 45 13 chr4 6207858 6208169 -149421951 - L1M4 LINE L1 -936 5210 4890 2 632 991 240 10 0 chr4 6208195 6208399 -149421721 - B3 SINE B2 -5 211 6 2 632 681 293 49 0 chr4 6208466 6208671 -149421449 + B3 SINE B2 2 216 0 2 632 364 287 71 86 chr4 6208689 6208887 -149421233 - L1M4 LINE L1 -1319 4827 4633 2 632 478 282 169 28 chr4 6208949 6209598 -149420522 - L1M4 LINE L1 -1610 4536 3796 2 632 1656 182 36 20 chr4 6209720 6210075 -149420045 - ORR1B1 LTR MaLR 0 394 1 2 632 297 0 0 0 chr4 6210282 6210315 -149419805 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 632 266 50 0 24 chr4 6210349 6210390 -149419730 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 632 26 30 0 0 chr4 6210451 6210484 -149419636 + AT_rich Low_complexity Low_complexity 1 33 0 2 632 3995 143 34 6 chr4 6210861 6211534 -149418586 - RLTR17 LTR ERVK 0 692 1 2 632 830 291 80 8 chr4 6211677 6211935 -149418185 + ORR1D2 LTR MaLR 56 332 -38 2 632 2062 223 14 7 chr4 6211935 6212368 -149417752 + RLTR11A LTR ERVK 1 436 -92 2 632 11672 74 8 2 chr4 6212368 6214037 -149416083 + L1_Mus4 LINE L1 3626 5303 -580 2 632 919 64 0 0 chr4 6214034 6214159 -149415961 + L1_Mus4 LINE L1 5673 5797 -839 2 632 267 0 0 0 chr4 6214147 6214179 -149415941 + L1_Mm LINE L1 5309 5340 -543 2 632 2063 31 4 0 chr4 6214179 6214439 -149415681 - RLTR10-int LTR ERVK -1686 301 41 2 632 3116 18 2 116 chr4 6214449 6214889 -149415231 - RLTR10 LTR ERVK 0 390 1 2 632 1996 54 0 4 chr4 6214889 6215141 -149414979 + L1_Mm LINE L1 5335 5586 -297 2 632 7381 73 12 12 chr4 6215141 6215908 -149414212 + L1Md_F2 LINE L1 5587 6347 -235 2 632 2051 135 0 10 chr4 6215908 6216222 -149413898 - RLTR10E LTR ERVK 0 311 1 2 632 7381 73 12 12 chr4 6216222 6216438 -149413682 + L1Md_F2 LINE L1 6348 6570 -12 2 632 406 231 11 21 chr4 6216469 6216562 -149413558 + RLTR11A LTR ERVK 424 515 -13 2 632 531 205 34 0 chr4 6216906 6217023 -149413097 + MurSatRep1 Unknown Unknown 612 732 -1405 2 632 28 0 0 0 chr4 6217254 6217282 -149412838 + AT_rich Low_complexity Low_complexity 1 28 0 2 632 29 28 0 0 chr4 6217313 6217349 -149412771 + AT_rich Low_complexity Low_complexity 1 36 0 2 632 228 35 0 0 chr4 6217388 6217417 -149412703 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 632 3745 215 28 7 chr4 6217424 6218250 -149411870 - Lx5 LINE L1 -287 6763 5921 2 632 745 157 0 22 chr4 6218268 6218405 -149411715 - L1_Mur2 LINE L1 -2161 3716 3583 2 632 23 0 0 0 chr4 6218579 6218602 -149411518 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 278 292 52 26 chr4 6218632 6218748 -149411372 - RSINE1 SINE B4 -1 164 46 2 632 800 220 14 0 chr4 6218897 6219038 -149411082 - B1_Mur2 SINE Alu -6 143 1 2 632 981 262 43 21 chr4 6219051 6219472 -149410648 - L1M4 LINE L1 -3206 2940 2511 2 632 331 253 45 26 chr4 6219935 6220089 -149410031 - L1M4 LINE L1 -3629 2517 2361 2 632 571 279 110 5 chr4 6220358 6220567 -149409553 - Tigger7 DNA MER2_type -1 2490 2260 2 632 626 338 52 85 chr4 6220573 6220938 -149409182 + ORR1E LTR MaLR 1 353 -6 2 632 324 277 0 0 chr4 6220935 6221018 -149409102 - Tigger7 DNA MER2_type -217 2274 2192 2 632 1024 170 8 69 chr4 6221321 6221568 -149408552 + L1Md_T LINE L1 6351 6582 0 2 632 7372 63 0 1 chr4 6221681 6222589 -149407531 - L1_Mus1 LINE L1 0 6567 5661 3 632 5752 88 9 1 chr4 6222585 6223361 -149406759 + L1_Mus1 LINE L1 4881 5662 -221 3 632 7503 97 4 22 chr4 6223809 6224963 -149405157 + L1_Mus3 LINE L1 5503 6638 0 3 632 697 286 52 3 chr4 6224982 6225001 -149405119 + Lx7 LINE L1 984 1002 -6726 3 632 258 105 0 0 chr4 6225001 6225039 -149405081 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 632 697 286 52 3 chr4 6225039 6225349 -149404771 + Lx7 LINE L1 1003 1327 -6401 3 632 898 243 64 15 chr4 6225330 6225597 -149404523 + Lx7 LINE L1 1515 1794 -4086 3 632 4919 225 70 39 chr4 6225591 6226364 -149403756 + Lx7 LINE L1 4474 5250 -630 3 632 207 0 0 0 chr4 6226364 6226387 -149403733 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 632 5703 245 90 28 chr4 6226387 6228306 -149401814 + Lx7 LINE L1 5251 7325 -371 3 632 539 103 10 0 chr4 6228306 6228403 -149401717 + (CTTTG)n Simple_repeat Simple_repeat 2 99 0 3 632 5703 253 98 24 chr4 6228403 6228492 -149401628 + Lx7 LINE L1 7326 7426 -270 3 632 22 35 0 0 chr4 6228570 6228599 -149401521 + AT_rich Low_complexity Low_complexity 1 29 0 3 632 627 189 269 41 chr4 6228619 6228790 -149401330 + B3 SINE B2 2 211 -5 3 632 3376 237 85 4 chr4 6228839 6229682 -149400438 - Lx6 LINE L1 -18 7442 6531 3 632 1344 302 18 8 chr4 6229713 6230435 -149399685 + RMER1C Other Other 65 882 -460 3 632 2896 202 111 56 chr4 6230451 6231372 -149398748 + RMER1B Other Other 52 1044 -22 3 632 11106 88 8 1 chr4 6231864 6234076 -149396044 - L1_Mus2 LINE L1 0 6566 4338 3 632 399 56 0 0 chr4 6234244 6234298 -149395822 + (A)n Simple_repeat Simple_repeat 1 54 0 3 632 1327 215 9 13 chr4 6234518 6234833 -149395287 + Lx5 LINE L1 877 1190 -6538 3 632 7776 69 6 0 chr4 6234835 6235807 -149394313 + L1_Mus1 LINE L1 5590 6567 0 3 632 36386 45 2 8 chr4 6235891 6241078 -149389042 + L1Md_F2 LINE L1 439 5586 -297 3 632 8660 40 4 7 chr4 6241078 6242075 -149388045 + L1Md_F2 LINE L1 5587 6580 -2 3 632 578 144 34 0 chr4 6242106 6242252 -149387868 + GA-rich Low_complexity Low_complexity 2 152 0 3 632 11573 198 77 159 chr4 6242288 6242979 -149387141 + Lx5 LINE L1 1276 2072 -3808 3 632 186 43 0 0 chr4 6242979 6243002 -149387118 + (CCA)n Simple_repeat Simple_repeat 3 25 0 3 632 11573 198 77 159 chr4 6243002 6243714 -149386406 + Lx5 LINE L1 2073 2680 -3198 3 632 271 244 35 47 chr4 6243714 6243734 -149386386 + ID_B1 SINE B4 63 145 -77 3 632 337 102 0 78 chr4 6243734 6243798 -149386322 + B1_Mur4 SINE Alu 2 60 -90 3 632 11573 198 77 159 chr4 6243800 6243928 -149386192 + Lx5 LINE L1 2681 2791 -3087 3 632 280 212 55 78 chr4 6243884 6244012 -149386108 + RLTR25B LTR ERVK 397 521 -507 3 632 793 71 0 0 chr4 6243928 6244027 -149386093 + B1_Mus2 SINE Alu 42 140 -7 3 632 216 67 0 0 chr4 6244029 6244059 -149386061 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 632 11573 198 77 159 chr4 6244059 6245046 -149385074 + Lx5 LINE L1 2794 3781 -2099 3 632 634 283 42 46 chr4 6245046 6245325 -149384795 + RLTR16 LTR ERVK 32 362 -330 3 632 11573 198 77 159 chr4 6245325 6246832 -149383288 + Lx5 LINE L1 3782 5292 -588 3 632 782 182 15 0 chr4 6246832 6246964 -149383156 + B1_Mur4 SINE Alu 5 138 -12 3 632 396 0 0 0 chr4 6246964 6247008 -149383112 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 632 11573 235 131 65 chr4 6247008 6248466 -149381654 + Lx5 LINE L1 5293 7245 -215 3 632 292 119 34 0 chr4 6248544 6248603 -149381517 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 632 984 271 39 117 chr4 6248639 6249024 -149381096 + MTE2a LTR MaLR 1 355 -24 3 632 402 269 24 66 chr4 6249104 6249271 -149380849 - MLT1J-int LTR MaLR -15 1372 1213 3 632 8008 67 5 1 chr4 6249464 6250785 -149379335 - L1_Mus2 LINE L1 -1 6565 5239 3 632 5763 113 1 0 chr4 6250782 6251677 -149378443 - L1_Mus2 LINE L1 -3770 2113 1218 3 632 1487 190 80 70 chr4 6251665 6252073 -149378047 - L1_Mus2 LINE L1 -5644 972 364 3 632 313 202 99 77 chr4 6252739 6252830 -149377290 + PB1D10 SINE Alu 23 115 -2 3 632 3018 30 33 0 chr4 6253503 6253838 -149376282 + ORR1A0 LTR MaLR 1 346 0 3 632 607 138 23 94 chr4 6254015 6254143 -149375977 - RMER1B Other Other -4 1062 944 3 632 453 161 0 0 chr4 6254143 6254230 -149375890 + (CAT)n Simple_repeat Simple_repeat 3 89 0 3 632 364 155 0 33 chr4 6254232 6254292 -149375828 - RMER1B Other Other -139 927 870 3 632 1396 60 0 0 chr4 6254307 6254473 -149375647 - L1_Mus1 LINE L1 -8 6559 6394 3 632 2728 46 0 0 chr4 6254487 6254810 -149375310 + L1_Mus1 LINE L1 5587 5909 -658 3 632 903 202 169 50 chr4 6254810 6255070 -149375050 - MTD LTR MaLR -61 358 68 3 632 226 219 0 0 chr4 6255520 6255561 -149374559 - ID4 SINE ID -17 66 26 3 632 717 290 12 0 chr4 6256282 6256444 -149373676 - RSINE1 SINE B4 -1 164 1 3 632 22 0 0 0 chr4 6256597 6256619 -149373501 + AT_rich Low_complexity Low_complexity 1 22 0 3 632 3762 75 2 4 chr4 6256854 6257326 -149372794 + L1_Mus4 LINE L1 6164 6634 -2 3 632 641 278 35 47 chr4 6257338 6257408 -149372712 + B3 SINE B2 1 75 -141 3 632 2091 147 16 3 chr4 6257408 6257730 -149372390 - ORR1A3 LTR MaLR 0 326 1 3 632 641 278 35 47 chr4 6257730 6257829 -149372291 + B3 SINE B2 76 168 -48 3 632 215 31 0 30 chr4 6257899 6257932 -149372188 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 632 456 285 105 68 chr4 6258242 6258752 -149371368 - L1MA4A LINE L1 -391 5912 5356 3 632 830 176 72 26 chr4 6258760 6258953 -149371167 - Lx5 LINE L1 0 7050 6849 3 632 251 146 20 40 chr4 6259299 6259349 -149370771 - MTE2b LTR MaLR -8 371 323 3 632 1701 330 97 18 chr4 6259393 6260230 -149369890 + MERVL_2A-int LTR ERVL 1107 2009 -3748 3 632 1881 287 75 30 chr4 6260269 6260865 -149369255 + MERVL_2A-int LTR ERVL 2138 2760 -3001 3 632 320 300 11 22 chr4 6260972 6261064 -149369056 + RSINE1 SINE B4 59 149 -16 3 632 339 85 0 0 chr4 6261064 6261111 -149369009 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 632 516 292 41 5 chr4 6261118 6261314 -149368806 - L1MA4A LINE L1 -3259 2884 2682 3 632 590 185 67 8 chr4 6262202 6262322 -149367798 + B1_Mus2 SINE Alu 2 128 -19 3 632 324 70 0 0 chr4 6262325 6262368 -149367752 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 3 632 231 188 0 0 chr4 6262634 6262682 -149367438 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 632 590 339 91 47 chr4 6262694 6263479 -149366641 - L1MA4 LINE L1 -1581 5892 5045 3 632 1777 158 39 39 chr4 6263494 6263829 -149366291 + ORR1B1 LTR MaLR 41 375 -19 3 632 206 293 0 68 chr4 6264224 6264312 -149365808 + GA-rich Low_complexity Low_complexity 3 84 0 3 632 827 284 60 130 chr4 6264500 6265046 -149365074 + RLTR18B LTR ERVK 4 511 -1 3 632 1310 67 6 0 chr4 6265774 6265952 -149364168 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 632 924 79 0 0 chr4 6265952 6266078 -149364042 + (TTC)n Simple_repeat Simple_repeat 1 126 0 3 632 245 174 22 0 chr4 6266081 6266127 -149363993 - PB1D10 SINE Alu -14 103 57 3 632 1059 224 70 0 chr4 6267100 6267301 -149362819 - B3 SINE B2 0 216 2 3 632 216 158 0 0 chr4 6267776 6267814 -149362306 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 632 724 186 43 0 chr4 6267930 6268070 -149362050 + B1_Mur4 SINE Alu 5 150 0 3 632 1420 241 63 11 chr4 6268264 6268612 -149361508 + ORR1D2 LTR MaLR 1 366 -4 3 632 604 261 0 22 chr4 6268649 6268786 -149361334 - B1F1 SINE Alu -15 134 1 3 632 516 324 39 0 chr4 6269697 6269876 -149360244 - MLT1D LTR MaLR -42 463 278 3 632 1860 151 154 23 chr4 6270109 6270454 -149359666 + ORR1B1 LTR MaLR 5 394 0 3 632 261 131 31 47 chr4 6270952 6271016 -149359104 + B4 SINE B4 161 223 -69 3 632 586 155 8 8 chr4 6271017 6271134 -149358986 + GA-rich Low_complexity Low_complexity 4 120 0 3 632 348 229 0 0 chr4 6271134 6271195 -149358925 + B4 SINE B4 228 288 -4 3 632 556 81 23 0 chr4 6271429 6271516 -149358604 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 632 358 167 141 0 chr4 6271524 6271602 -149358518 - Lx9 LINE L1 -172 7472 7384 3 632 457 339 109 26 chr4 6271689 6271992 -149358128 + Tigger9a DNA Tigger 15 342 -390 3 632 26 0 0 0 chr4 6272203 6272229 -149357891 + AT_rich Low_complexity Low_complexity 1 26 0 3 632 576 296 65 14 chr4 6272836 6273114 -149357006 - Tigger7 DNA MER2_type -9 2482 2191 3 632 505 352 42 42 chr4 6276700 6276937 -149353183 - Tigger7 DNA MER2_type -2186 305 69 3 632 216 111 0 0 chr4 6277106 6277142 -149352978 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 3 632 402 315 0 27 chr4 6277365 6277476 -149352644 - B4A SINE B4 -72 220 113 3 632 252 309 89 63 chr4 6278003 6278193 -149351927 - Kanga11a DNA Tc2 -676 294 100 3 632 1069 300 183 21 chr4 6279053 6279622 -149350498 - FordPrefect DNA Tip100 -162 1521 861 3 632 2911 69 0 3 chr4 6279657 6280004 -149350116 - ORR1A1 LTR MaLR 0 346 1 3 632 7180 42 26 7 chr4 6280004 6280930 -149349190 - ORR1A1-int LTR MaLR 0 1792 849 3 632 198 0 0 0 chr4 6281184 6281206 -149348914 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 632 6238 64 0 2 chr4 6281430 6282280 -149347840 - ORR1A1-int LTR MaLR -944 848 1 3 632 1570 26 0 5 chr4 6282281 6282475 -149347645 - ORR1A1 LTR MaLR -13 333 141 3 632 21 36 0 0 chr4 6282699 6282727 -149347393 + AT_rich Low_complexity Low_complexity 1 28 0 3 632 315 265 28 42 chr4 6282792 6282863 -149347257 + ID4_ SINE ID 3 72 -11 3 632 248 250 33 0 chr4 6283264 6283324 -149346796 - ID4 SINE ID -19 64 3 3 632 750 228 142 5 chr4 6283443 6283633 -149346487 + Lx8 LINE L1 7087 7302 -171 3 632 3024 93 71 75 chr4 6283750 6284271 -149345849 + MURVY-LTR LTR ERV1 1 519 0 3 632 535 149 167 29 chr4 6284405 6284543 -149345577 + Lx8 LINE L1 7315 7471 -2 3 632 673 222 217 43 chr4 6285218 6285402 -149344718 + B3 SINE B2 1 216 0 3 632 1366 199 94 58 chr4 6285507 6285901 -149344219 + RMER10A LTR ERVL 35 442 0 3 632 299 241 102 51 chr4 6286810 6286928 -149343192 - MLT1A1 LTR MaLR -17 391 268 3 632 349 322 93 23 chr4 6287301 6287517 -149342603 + L2b LINE L2 2936 3166 -209 3 632 702 182 0 132 chr4 6287657 6287809 -149342311 + B1_Mus2 SINE Alu 15 146 -1 3 632 465 254 89 11 chr4 6287832 6288011 -149342109 - L1MC1 LINE L1 -43 6301 6109 3 632 552 303 38 79 chr4 6288462 6288702 -149341418 - MER21B LTR ERV1 -618 245 16 3 632 195 42 0 0 chr4 6288721 6288745 -149341375 + (TTATA)n Simple_repeat Simple_repeat 5 28 0 3 632 525 258 151 13 chr4 6288805 6289037 -149341083 - L1MC1 LINE L1 -229 6104 5841 3 632 225 284 63 63 chr4 6289044 6289123 -149340997 - B1_Mur2 SINE Alu -48 101 23 3 632 375 132 0 0 chr4 6289183 6289251 -149340869 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 632 239 215 231 0 chr4 6289426 6289491 -149340629 + RMER20A LTR ERVK 91 170 -346 3 632 945 261 13 13 chr4 6289667 6289900 -149340220 - B4 SINE B4 -56 236 4 3 632 370 272 181 35 chr4 6289909 6290282 -149339838 - L1MC1 LINE L1 -2235 5760 5324 3 632 610 134 86 70 chr4 6290286 6290414 -149339706 - B1_Mus2 SINE Alu 0 147 18 3 632 270 322 75 75 chr4 6290993 6291154 -149338966 - RSINE1 SINE B4 -4 161 1 3 632 499 264 83 11 chr4 6291154 6291334 -149338786 - L1MC1 LINE L1 -1477 4669 4477 3 9 942 145 26 13 chr4 6291343 6291497 -149338623 - RMER5 LTR ERV1 0 534 379 3 633 1102 45 0 0 chr4 6291511 6291645 -149338475 - B1_Mus1 SINE Alu -1 147 14 4 633 1402 214 14 60 chr4 6291645 6291993 -149338127 - RMER5 LTR ERV1 -152 382 51 3 633 629 216 167 28 chr4 6291994 6292246 -149337874 - L1MC1 LINE L1 -1684 4462 4176 3 633 234 0 0 0 chr4 6292585 6292611 -149337509 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 633 267 31 0 0 chr4 6294532 6294564 -149335556 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 633 277 49 0 24 chr4 6295051 6295093 -149335027 - Lx3C LINE L1 0 6976 6936 4 633 266 0 29 0 chr4 6295191 6295225 -149334895 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 633 549 289 124 29 chr4 6295319 6295665 -149334455 - Looper DNA PiggyBac -14 1544 1166 4 633 448 307 116 22 chr4 6295659 6295979 -149334141 - Looper DNA PiggyBac -298 1260 911 4 633 555 223 0 43 chr4 6298715 6298832 -149331288 - URR1A DNA MER1_type -113 113 2 4 633 1387 116 86 14 chr4 6299020 6299230 -149330890 + URR1B DNA MER1_type 1 225 0 4 633 479 264 235 24 chr4 6299260 6299627 -149330493 + L1MB5 LINE L1 2400 2822 -3318 4 633 1501 54 16 32 chr4 6299627 6299817 -149330303 + B2_Mm2 SINE B2 2 188 -7 4 633 479 264 235 24 chr4 6299817 6299904 -149330216 + L1MB5 LINE L1 2823 2950 -3190 4 633 582 287 31 0 chr4 6299905 6300034 -149330086 - B3A SINE B2 -65 133 1 4 633 529 277 107 50 chr4 6300374 6300712 -149329408 + L1MB5 LINE L1 4896 5252 -894 4 633 431 350 72 5 chr4 6300716 6300923 -149329197 + MLT1A0 LTR MaLR 1 221 -144 4 633 285 262 38 0 chr4 6300935 6301015 -149329105 + MLT1A0 LTR MaLR 299 381 -27 4 633 504 317 138 54 chr4 6301073 6301723 -149328397 + L1MB5 LINE L1 5304 6008 -166 4 633 391 196 134 0 chr4 6301969 6302066 -149328054 - B1_Mur3 SINE Alu 0 149 40 4 633 3115 167 89 83 chr4 6302076 6302874 -149327246 - Lx9 LINE L1 0 7644 6842 4 633 313 184 112 14 chr4 6302881 6302975 -149327145 - Lx9 LINE L1 -1144 6500 6440 4 633 352 319 26 86 chr4 6304486 6304637 -149325483 - B3A SINE B2 -18 180 39 4 633 608 160 8 0 chr4 6304649 6304768 -149325352 + CT-rich Low_complexity Low_complexity 2 121 0 4 633 747 218 30 0 chr4 6304780 6304936 -149325184 - B3 SINE B2 -27 171 2 4 633 450 310 18 72 chr4 6305656 6305823 -149324297 + ID_B1 SINE B4 33 190 -34 4 633 3404 34 0 5 chr4 6306346 6306735 -149323385 + L1Md_F2 LINE L1 6184 6570 -12 4 633 370 281 0 46 chr4 6307708 6307816 -149322304 - PB1D9 SINE Alu -17 103 1 4 633 1495 224 160 75 chr4 6308881 6308963 -149321157 - RLTR20A LTR ERVK -6 535 451 4 633 207 0 0 0 chr4 6308963 6308986 -149321134 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 633 558 0 0 0 chr4 6308986 6309047 -149321073 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 633 1495 224 160 75 chr4 6309047 6309456 -149320664 - RLTR20A LTR ERVK -91 450 2 4 633 28 48 0 0 chr4 6309800 6309842 -149320278 + AT_rich Low_complexity Low_complexity 1 42 0 4 633 617 221 82 41 chr4 6310301 6310395 -149319725 - RLTR20A2 LTR ERVK 0 578 492 4 633 306 0 0 0 chr4 6310395 6310429 -149319691 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 633 617 232 79 40 chr4 6310429 6310526 -149319594 - RLTR20A2 LTR ERVK -87 491 354 4 633 606 216 51 15 chr4 6311098 6311295 -149318825 - L1M2 LINE L1 -792 5351 5148 4 633 195 42 0 0 chr4 6312862 6312886 -149317234 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 633 492 128 0 0 chr4 6312886 6312964 -149317156 + (TCC)n Simple_repeat Simple_repeat 1 78 0 4 633 198 0 0 0 chr4 6313406 6313428 -149316692 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 633 294 256 8 57 chr4 6314014 6314138 -149315982 - Lx9 LINE L1 0 7644 7527 4 633 26 98 0 0 chr4 6314187 6314269 -149315851 + AT_rich Low_complexity Low_complexity 1 82 0 4 633 220 237 10 40 chr4 6314289 6314380 -149315740 + T-rich Low_complexity Low_complexity 13 101 0 4 633 3166 72 29 2 chr4 6314380 6314795 -149315325 - Lx3_Mus LINE L1 0 7009 6584 4 633 412 316 57 6 chr4 6315399 6315558 -149314562 + B3A SINE B2 2 168 -30 4 633 453 236 148 48 chr4 6316003 6316376 -149313744 - L1M3 LINE L1 -61 5786 5327 4 633 691 118 27 0 chr4 6316384 6316494 -149313626 - B1_Mus1 SINE Alu -13 135 23 4 633 297 264 54 132 chr4 6316494 6316547 -149313573 - B4 SINE B4 -76 213 64 4 633 738 296 80 55 chr4 6316917 6317514 -149312606 - L1M3 LINE L1 -1188 4952 4341 4 633 209 57 29 0 chr4 6317858 6317893 -149312227 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 633 729 54 0 0 chr4 6317896 6317989 -149312131 - B1_Mus2 SINE Alu -7 140 48 4 633 2427 187 56 36 chr4 6318219 6318769 -149311351 + RLTR31_Mm LTR ERVK 1 561 0 4 633 1568 198 62 98 chr4 6318770 6318851 -149311269 + RMER3D-int LTR ERVK 2 60 -2782 4 633 612 145 8 33 chr4 6318851 6318972 -149311148 - L1Md_F2 LINE L1 0 6582 6465 4 633 1568 197 76 85 chr4 6318972 6319475 -149310645 + RMER3D-int LTR ERVK 61 935 -1907 4 633 544 162 41 41 chr4 6319510 6319632 -149310488 + RMER3D-int LTR ERVK 489 610 -2232 4 633 1458 153 29 25 chr4 6319634 6319969 -149310151 + RMER3D-int LTR ERVK 1022 1328 -1514 4 633 258 275 102 42 chr4 6323084 6323251 -149306869 + MARNA DNA Mariner 133 309 -277 4 633 3123 73 13 0 chr4 6324096 6324491 -149305629 - L1Md_F2 LINE L1 0 6582 6183 4 633 675 53 0 0 chr4 6324712 6324807 -149305313 + L1Md_F2 LINE L1 6488 6582 0 4 633 496 247 80 31 chr4 6326394 6326557 -149303563 + B3A SINE B2 1 171 -27 4 633 540 0 0 0 chr4 6326558 6326618 -149303502 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 633 315 0 0 0 chr4 6326619 6326654 -149303466 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 633 10585 244 141 50 chr4 6326914 6327945 -149302175 + Lx9 LINE L1 900 2048 -3799 4 633 198 0 0 0 chr4 6327945 6327967 -149302153 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 633 10585 238 112 61 chr4 6327967 6328843 -149301277 + Lx9 LINE L1 2049 3027 -2820 4 633 781 154 154 0 chr4 6328843 6328973 -149301147 + B1_Mur4 SINE Alu 1 150 0 4 633 10585 246 112 58 chr4 6328973 6332008 -149298112 + Lx9 LINE L1 3028 6209 -1264 4 633 459 0 0 0 chr4 6332008 6332059 -149298061 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 633 2677 279 75 32 chr4 6332059 6333265 -149296855 + Lx9 LINE L1 6210 7637 -7 4 633 198 0 0 0 chr4 6333506 6333528 -149296592 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 633 1369 254 189 8 chr4 6334702 6335099 -149295021 + Lx8 LINE L1 6380 6848 -625 4 633 1557 256 86 9 chr4 6335114 6335555 -149294565 + Lx8 LINE L1 6999 7473 0 4 633 22 35 0 0 chr4 6335572 6335601 -149294519 + AT_rich Low_complexity Low_complexity 1 29 0 4 633 201 189 19 19 chr4 6336841 6336895 -149293225 + CT-rich Low_complexity Low_complexity 2 55 0 4 633 665 263 33 11 chr4 6337415 6337596 -149292524 - B3 SINE B2 -27 189 5 4 633 1219 48 0 0 chr4 6338036 6338183 -149291937 + B1_Mus2 SINE Alu 1 147 0 4 633 1302 161 37 0 chr4 6339142 6339359 -149290761 - URR1A DNA MER1_type 0 226 2 4 633 3141 12 0 9 chr4 6340116 6340465 -149289655 + ORR1A0 LTR MaLR 1 346 0 4 633 508 270 133 15 chr4 6341297 6341500 -149288620 - B4A SINE B4 -9 283 57 4 633 507 226 12 99 chr4 6341900 6342062 -149288058 - URR1A DNA MER1_type -2 224 77 4 633 558 67 0 0 chr4 6343056 6343131 -149286989 + (GAGAA)n Simple_repeat Simple_repeat 5 79 0 4 633 210 261 15 44 chr4 6343434 6343502 -149286618 - ID4_ SINE ID 0 83 18 4 633 609 305 0 71 chr4 6343967 6344179 -149285941 - B3A SINE B2 -1 197 1 4 633 310 230 33 33 chr4 6344758 6344848 -149285272 - PB1D10 SINE Alu -16 101 12 4 633 235 298 40 50 chr4 6346342 6346441 -149283679 + MT2B LTR ERVL 161 258 -343 4 633 569 173 83 38 chr4 6346353 6346485 -149283635 + B1_Mus1 SINE Alu 11 148 0 4 633 893 205 73 20 chr4 6346504 6346708 -149283412 + B3 SINE B2 2 216 0 4 633 544 215 69 0 chr4 6346769 6346899 -149283221 - B1_Mur2 SINE Alu -1 148 10 4 633 2326 167 69 21 chr4 6347483 6347961 -149282159 + RLTR16 LTR ERVK 1 501 -4 4 633 259 191 59 0 chr4 6348424 6348492 -149281628 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 4 633 637 233 0 20 chr4 6348573 6348726 -149281394 + RSINE1 SINE B4 9 158 -7 4 633 709 144 0 15 chr4 6348740 6348874 -149281246 + GA-rich Low_complexity Low_complexity 4 135 0 4 633 23 86 0 0 chr4 6349131 6349189 -149280931 + AT_rich Low_complexity Low_complexity 1 58 0 4 633 326 296 44 62 chr4 6349426 6349700 -149280420 + ORR1D2 LTR MaLR 87 355 -15 4 633 2564 83 3 0 chr4 6350086 6350412 -149279708 + ORR1A2 LTR MaLR 1 327 0 4 633 1004 67 97 0 chr4 6350974 6351108 -149279012 + B1_Mm SINE Alu 1 147 0 4 633 317 272 22 0 chr4 6352560 6352652 -149277468 + PB1D10 SINE Alu 24 117 0 4 633 444 51 0 0 chr4 6354057 6354116 -149276004 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 633 257 274 82 45 chr4 6354149 6354196 -149275924 - B4A SINE B4 -152 140 2 4 633 297 244 11 11 chr4 6354196 6354283 -149275837 - B3A SINE B2 -110 88 2 4 633 575 265 82 39 chr4 6356765 6356997 -149273123 + L1M5 LINE L1 2663 2904 -3242 4 633 411 208 148 19 chr4 6357653 6357761 -149272359 - B3 SINE B2 -15 201 80 4 633 293 285 41 0 chr4 6358677 6358849 -149271271 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 4 633 280 287 35 6 chr4 6358928 6359278 -149270842 + (CTCA)n Simple_repeat Simple_repeat 1 360 0 4 633 363 257 41 0 chr4 6359301 6359646 -149270474 + (CTCA)n Simple_repeat Simple_repeat 1 359 0 4 633 300 335 103 19 chr4 6360613 6360838 -149269282 + MLT2B4 LTR ERVL 65 309 -211 4 633 252 270 22 22 chr4 6360914 6361005 -149269115 + (CATATA)n Simple_repeat Simple_repeat 5 95 0 4 633 783 221 82 0 chr4 6361773 6361968 -149268152 - B3 SINE B2 0 216 6 4 633 262 271 47 0 chr4 6365573 6365658 -149264462 + MER2B DNA MER2_type 193 281 -55 4 633 210 37 0 0 chr4 6365733 6365760 -149264360 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 633 295 173 74 0 chr4 6366219 6366300 -149263820 + T-rich Low_complexity Low_complexity 5 91 0 4 633 1461 181 46 61 chr4 6366300 6366646 -149263474 - RMER1C Other Other 0 1342 1002 4 633 1059 37 0 0 chr4 6366646 6366782 -149263338 + (TTGG)n Simple_repeat Simple_repeat 2 137 0 4 633 665 159 129 0 chr4 6366782 6366914 -149263206 - B1_Mur3 SINE Alu 0 149 1 4 633 3064 36 0 0 chr4 6369381 6369739 -149260381 + L1Md_T LINE L1 6225 6582 0 4 633 24 0 0 0 chr4 6369847 6369871 -149260249 + AT_rich Low_complexity Low_complexity 1 24 0 4 633 255 224 0 17 chr4 6370867 6370926 -149259194 - MER34 LTR ERV1 -82 460 403 4 633 254 243 43 0 chr4 6371246 6371316 -149258804 - LTR48 LTR ERV1 -703 84 12 5 633 213 94 0 0 chr4 6372080 6372112 -149258008 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 633 180 111 0 0 chr4 6372112 6372139 -149257981 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 633 1165 233 76 34 chr4 6372807 6372914 -149257206 - MTD LTR MaLR 0 419 296 5 633 1184 139 93 10 chr4 6372914 6373118 -149257002 + URR1B DNA MER1_type 5 225 0 5 633 1165 233 76 34 chr4 6373118 6373200 -149256920 - MTD LTR MaLR -124 295 214 5 633 905 65 0 0 chr4 6373200 6373324 -149256796 + L1_Mus1 LINE L1 6444 6567 0 5 633 1165 233 76 34 chr4 6373324 6373515 -149256605 - MTD LTR MaLR -206 213 23 5 633 5405 31 0 0 chr4 6374970 6375590 -149254530 + L1Md_T LINE L1 5963 6582 0 5 633 248 365 37 14 chr4 6375959 6376173 -149253947 + L1MEe LINE L1 235 453 -4401 5 633 465 245 180 0 chr4 6376540 6376679 -149253441 + RSINE1 SINE B4 2 165 0 5 633 266 24 73 0 chr4 6377078 6377119 -149253001 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 633 371 236 8 109 chr4 6377621 6377637 -149252483 + MT2B LTR ERVL 151 154 -447 5 633 802 88 0 3 chr4 6377637 6377760 -149252360 + B1_Mus1 SINE Alu 1 120 -27 5 633 232 303 30 0 chr4 6377951 6378017 -149252103 + ID4_ SINE ID 3 70 -13 5 633 385 24 96 0 chr4 6378835 6378918 -149251202 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 633 400 206 114 91 chr4 6379332 6379508 -149250612 + MER53 DNA hAT 14 193 0 5 633 30 103 0 0 chr4 6380974 6381081 -149249039 + GC_rich Low_complexity Low_complexity 1 107 0 5 633 23 54 0 0 chr4 6381092 6381129 -149248991 + GC_rich Low_complexity Low_complexity 1 37 0 5 633 198 71 0 0 chr4 6381246 6381274 -149248846 + (CGGG)n Simple_repeat Simple_repeat 1 28 0 5 633 1180 289 62 40 chr4 6381604 6382270 -149247850 - L1MB7 LINE L1 -61 6123 5411 5 633 262 213 160 0 chr4 6382768 6382843 -149247277 + MER67B LTR ERV1 1 87 -456 5 633 347 284 115 91 chr4 6383010 6383219 -149246901 + B4A SINE B4 1 214 -78 5 633 736 250 246 4 chr4 6383321 6383645 -149246475 + MER67B LTR ERV1 241 593 -68 5 633 315 0 0 0 chr4 6383838 6383873 -149246247 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 633 1933 209 95 8 chr4 6384005 6384405 -149245715 - Lx6 LINE L1 0 7460 7026 5 633 437 156 109 9 chr4 6384405 6384515 -149245605 + RLTR15 LTR ERVK 1 121 -238 5 633 279 231 30 15 chr4 6384637 6384703 -149245417 - Lx6 LINE L1 -456 7004 6938 5 633 450 132 0 0 chr4 6385209 6385285 -149244835 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 633 735 124 0 55 chr4 6385304 6385432 -149244688 - ORR1B1 LTR MaLR -273 121 1 5 633 312 91 0 0 chr4 6385436 6385480 -149244640 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 5 633 284 231 77 0 chr4 6385760 6385825 -149244295 - PB1 SINE Alu -19 108 39 5 633 1031 167 172 0 chr4 6385891 6386083 -149244037 + URR1B DNA MER1_type 1 225 0 5 633 1065 226 14 0 chr4 6386324 6386536 -149243584 + B3 SINE B2 2 216 0 5 633 334 324 0 0 chr4 6386674 6386782 -149243338 - MTE2b LTR MaLR -269 110 3 5 633 1147 56 35 0 chr4 6387619 6387761 -149242359 - B1_Mus1 SINE Alu 0 148 2 5 633 331 299 65 0 chr4 6388061 6388168 -149241952 - PB1D10 SINE Alu -3 114 1 5 633 23 33 0 0 chr4 6388190 6388220 -149241900 + AT_rich Low_complexity Low_complexity 1 30 0 5 633 311 214 43 0 chr4 6388290 6388360 -149241760 + RLTR25A LTR ERVK 15 87 -1016 5 633 748 176 138 6 chr4 6388367 6388527 -149241593 + RLTR25A LTR ERVK 2 182 -921 5 633 315 228 280 60 chr4 6388597 6388765 -149241355 + RLTR25A LTR ERVK 832 1036 -67 5 633 208 0 62 0 chr4 6388766 6388798 -149241322 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 633 2376 101 6 18 chr4 6388800 6389132 -149240988 - L1_Mus3 LINE L1 -7 6631 6304 5 633 286 304 36 54 chr4 6389314 6389481 -149240639 + RNLTR23 LTR ERVK 479 642 0 5 633 338 277 0 0 chr4 6389583 6389666 -149240454 - ID4 SINE ID 0 83 1 5 633 617 263 18 66 chr4 6389703 6389870 -149240250 + ID_B1 SINE B4 65 223 -1 5 633 216 158 0 0 chr4 6390746 6390784 -149239336 + CT-rich Low_complexity Low_complexity 1 38 0 5 633 1275 247 79 3 chr4 6391028 6391357 -149238763 + MTEb LTR MaLR 6 359 -20 5 633 187 346 56 0 chr4 6391581 6391688 -149238432 - MIRb SINE MIR -137 131 19 5 633 732 238 13 37 chr4 6392004 6392190 -149237930 - B3 SINE B2 -3 213 32 5 633 335 288 162 25 chr4 6392191 6392351 -149237769 - L1ME1 LINE L1 -76 6103 5922 5 633 292 228 86 11 chr4 6392818 6392911 -149237209 - L1ME1 LINE L1 -407 5772 5673 5 633 2373 87 41 13 chr4 6393125 6393439 -149236681 + ORR1A2 LTR MaLR 5 327 0 5 633 312 348 8 25 chr4 6393549 6393667 -149236453 + B1F SINE Alu 16 131 -18 5 633 557 358 76 27 chr4 6393840 6394141 -149235979 + MLT1A LTR MaLR 46 361 -13 5 633 3634 174 30 21 chr4 6394326 6395002 -149235118 + RLTR17 LTR ERVK 1 682 -10 5 633 216 0 0 0 chr4 6395114 6395138 -149234982 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 633 1064 274 11 7 chr4 6395321 6395600 -149234520 + Lx7 LINE L1 7043 7322 -374 5 633 369 0 0 0 chr4 6395656 6395697 -149234423 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 633 279 0 0 0 chr4 6395697 6395728 -149234392 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 633 53 0 0 0 chr4 6395852 6395905 -149234215 + AT_rich Low_complexity Low_complexity 1 53 0 5 633 384 225 22 0 chr4 6396134 6396223 -149233897 - RSINE1 SINE B4 -64 101 11 5 633 22 0 0 0 chr4 6396726 6396748 -149233372 + AT_rich Low_complexity Low_complexity 1 22 0 5 633 573 185 0 0 chr4 6397075 6397194 -149232926 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 633 329 102 17 0 chr4 6397556 6397615 -149232505 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 633 912 51 0 25 chr4 6398367 6398488 -149231632 + B1_Mm SINE Alu 30 147 0 5 633 306 67 0 0 chr4 6398488 6398533 -149231587 + (A)n Simple_repeat Simple_repeat 1 45 0 5 633 462 262 0 110 chr4 6398830 6398993 -149231127 - RMER1B Other Other -428 638 494 5 633 1556 133 169 0 chr4 6399838 6400116 -149230004 - ORR1A4 LTR MaLR 0 329 5 5 633 6864 136 16 95 chr4 6400195 6400622 -149229498 + RMER12B LTR ERVK 1 390 -1014 5 633 1258 41 0 14 chr4 6400622 6400769 -149229351 + B1_Mus2 SINE Alu 3 147 0 5 633 6864 138 24 92 chr4 6400769 6401834 -149228286 + RMER12B LTR ERVK 391 1425 -147 5 633 444 304 47 13 chr4 6402104 6402254 -149227866 + ID_B1 SINE B4 2 156 -68 5 633 1986 186 57 3 chr4 6402250 6402633 -149227487 - MTC LTR MaLR -13 408 5 5 633 244 218 127 0 chr4 6402641 6402696 -149227424 + ID_B1 SINE B4 154 215 -9 5 633 204 320 0 58 chr4 6403027 6403130 -149226990 - L2 LINE L2 -2762 657 561 5 633 2225 144 56 40 chr4 6403336 6403713 -149226407 - RLTR9A2 LTR ERVK 0 383 1 5 633 3005 184 69 17 chr4 6404302 6404898 -149225222 + RMER20B LTR ERVK 1 627 0 5 633 566 171 66 39 chr4 6405304 6405454 -149224666 - RLTR9F LTR ERVK -162 253 110 5 633 5038 97 28 20 chr4 6405482 6406498 -149223622 + L1VL4 LINE L1 206 1221 -2338 5 633 3634 72 157 8 chr4 6406498 6406989 -149223131 + LTRIS2 LTR ERV1 1 564 0 5 633 1000 147 73 11 chr4 6407616 6407795 -149222325 + RMER16-int LTR ERVK 141 330 -5076 5 633 5139 114 18 18 chr4 6407780 6408548 -149221572 + RMER16-int LTR ERVK 688 1455 -3951 5 633 1411 212 108 19 chr4 6408525 6409163 -149220957 + MuRRS4-int LTR ERV1 750 1444 -3619 5 633 879 61 0 0 chr4 6409173 6409287 -149220833 + (GA)n Simple_repeat Simple_repeat 2 115 0 5 633 5607 94 11 18 chr4 6409287 6410186 -149219934 + MuRRS4-int LTR ERV1 1710 2691 -2372 5 633 1137 91 55 0 chr4 6410186 6410351 -149219769 + L1_Mus3 LINE L1 5731 5904 -734 5 633 1141 173 0 5 chr4 6410351 6410543 -149219577 + RLTR17 LTR ERVK 288 478 -214 5 633 1053 115 42 0 chr4 6410547 6410738 -149219382 + Lx LINE L1 6456 6654 0 5 633 263 269 157 16 chr4 6411384 6411505 -149218615 + MLT1D LTR MaLR 1 138 -367 5 633 282 301 40 57 chr4 6411518 6411720 -149218400 - ORR1D2 LTR MaLR -17 362 157 5 633 723 134 0 0 chr4 6411724 6411843 -149218277 + (GGGAGA)n Simple_repeat Simple_repeat 3 121 0 5 633 289 279 68 0 chr4 6411856 6411953 -149218167 - ORR1D2 LTR MaLR -239 120 9 5 633 1003 63 87 0 chr4 6412222 6412349 -149217771 + B1_Mus1 SINE Alu 2 139 -9 5 633 473 0 18 0 chr4 6412349 6412406 -149217714 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 5 633 560 333 68 11 chr4 6412588 6412852 -149217268 - B4A SINE B4 -12 280 2 5 633 950 186 116 11 chr4 6413187 6413377 -149216743 - B3 SINE B2 -5 211 2 5 633 309 151 0 0 chr4 6413550 6413603 -149216517 + (CATA)n Simple_repeat Simple_repeat 4 56 0 5 633 4054 101 107 14 chr4 6413605 6414283 -149215837 - RLTR13C2 LTR ERVK 0 806 69 5 633 266 263 79 14 chr4 6414293 6414432 -149215688 + Charlie1a DNA MER1_type 651 798 -657 5 633 576 269 88 51 chr4 6414489 6414531 -149215589 + Charlie1a DNA MER1_type 928 970 -485 5 633 4206 57 0 86 chr4 6414531 6415091 -149215029 + RLTR1B LTR ERV1 1 512 0 5 633 576 269 88 51 chr4 6415091 6415180 -149214940 + Charlie1a DNA MER1_type 971 1059 -396 5 633 5094 51 2 3 chr4 6415180 6415768 -149214352 + LTRIS_Mus LTR ERV1 1 587 0 5 633 576 269 88 51 chr4 6415768 6415929 -149214191 + Charlie1a DNA MER1_type 1060 1232 -223 5 633 665 132 41 0 chr4 6415970 6416091 -149214029 - Lx9 LINE L1 -3 7641 7516 5 633 270 0 0 0 chr4 6416092 6416122 -149213998 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 633 455 39 0 0 chr4 6416253 6416304 -149213816 + L1Md_F2 LINE L1 5536 5586 -297 5 633 8439 48 1 11 chr4 6416304 6417303 -149212817 + L1Md_F2 LINE L1 5587 6575 -7 5 633 469 268 77 35 chr4 6417612 6417782 -149212338 + B3A SINE B2 5 181 -17 5 633 522 132 0 0 chr4 6417816 6417899 -149212221 - ETnERV2-int LTR ERVK -2444 2962 2880 5 633 2184 180 117 115 chr4 6417909 6418832 -149211288 - ETnERV2-int LTR ERVK -4461 2945 1507 5 633 1283 170 2 44 chr4 6419033 6419290 -149210830 - RMER16-int LTR ERVK -3869 1537 1328 5 633 4990 87 40 4 chr4 6419344 6420048 -149210072 - RMER16-int LTR ERVK -3975 1431 703 5 633 600 40 0 0 chr4 6420049 6420124 -149209996 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 633 3962 101 32 9 chr4 6420128 6420695 -149209425 - RMER16-int LTR ERVK -4740 666 87 5 633 1606 74 32 14 chr4 6420763 6420983 -149209137 + L1Md_F2 LINE L1 6340 6563 -19 5 633 243 0 0 0 chr4 6420988 6421015 -149209105 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 633 245 252 41 109 chr4 6421300 6421447 -149208673 - RLTR43A LTR ERVK 0 364 228 6 633 268 263 91 13 chr4 6421666 6421743 -149208377 - RLTR31_Mm LTR ERVK -76 485 403 6 633 1372 214 58 21 chr4 6421744 6422074 -149208046 - BGLII_A LTR ERVK -103 342 1 6 633 1325 183 11 30 chr4 6422081 6422351 -149207769 + RMER3D-int LTR ERVK 1269 1533 -1309 6 79 5807 182 19 61 chr4 6422383 6422736 -149207384 + RMER3D-int LTR ERVK 1532 1872 -970 6 634 1246 62 0 0 chr4 6422736 6422881 -149207239 + B1_Mm SINE Alu 1 145 -2 6 634 5807 182 19 61 chr4 6422881 6423895 -149206225 + RMER3D-int LTR ERVK 1873 2841 -1 6 634 2192 223 20 34 chr4 6423896 6424553 -149205567 + RLTR31_Mur LTR ERVK 1 551 -2 6 634 270 0 0 0 chr4 6425688 6425718 -149204402 + (T)n Simple_repeat Simple_repeat 1 30 0 6 634 800 92 8 0 chr4 6425799 6425918 -149204202 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 6 634 438 321 72 14 chr4 6425931 6425949 -149204171 - B4 SINE B4 -52 240 94 6 634 601 207 132 0 chr4 6425949 6426070 -149204050 - B1_Mus1 SINE Alu -2 146 10 6 634 212 160 60 0 chr4 6426080 6426130 -149203990 + T-rich Low_complexity Low_complexity 3 55 0 6 634 219 130 43 0 chr4 6426648 6426694 -149203426 + A-rich Low_complexity Low_complexity 1 48 0 6 634 1048 294 66 26 chr4 6426948 6427374 -149202746 + RLTR28B LTR ERVL 1 443 -38 6 634 362 261 67 72 chr4 6427364 6427558 -149202562 - Tigger7 DNA MER2_type -32 2459 2267 6 634 1875 180 20 9 chr4 6427565 6427907 -149202213 + ORR1B1 LTR MaLR 41 386 -8 6 634 25015 102 80 16 chr4 6427932 6432758 -149197362 - L1_Mus2 LINE L1 0 6566 1408 6 634 7738 69 1 19 chr4 6432743 6434512 -149195608 - L1Md_F2 LINE L1 0 6582 4971 6 634 1273 112 5 5 chr4 6434505 6434712 -149195408 - L1_Mus2 LINE L1 -4420 1463 1257 6 634 821 139 0 14 chr4 6434714 6434860 -149195260 + CT-rich Low_complexity Low_complexity 2 145 0 6 634 2944 151 23 102 chr4 6435569 6436356 -149193764 - L1_Mus2 LINE L1 -5386 1271 522 6 634 917 247 39 9 chr4 6436490 6436821 -149193299 - L1VL2 LINE L1 -5933 402 62 6 634 1274 224 383 0 chr4 6437005 6437390 -149192730 + MT2A LTR ERVL 1 533 0 6 634 601 296 16 2 chr4 6437402 6437611 -149192509 + L1_Rod LINE L1 5604 5856 -27 6 634 266 364 66 6 chr4 6437959 6438125 -149191995 - MER99 DNA hAT? -383 448 273 6 634 1051 223 252 53 chr4 6438403 6438876 -149191244 - RMER2 LTR ERV1 0 567 1 6 634 2495 185 121 59 chr4 6439329 6439399 -149190721 - RLTR18 LTR ERVK 0 616 559 6 634 879 109 49 49 chr4 6439399 6439543 -149190577 + B1_Mus1 SINE Alu 5 148 0 6 634 2495 185 121 59 chr4 6439543 6440052 -149190068 - RLTR18 LTR ERVK -58 558 1 6 634 990 281 94 0 chr4 6441026 6441367 -149188753 + MLT1B LTR MaLR 1 373 -17 6 634 881 104 36 4 chr4 6442597 6442879 -149187241 + (TCTA)n Simple_repeat Simple_repeat 1 291 0 6 634 284 197 45 0 chr4 6442879 6442945 -149187175 - L1MB2 LINE L1 -4 6167 6099 6 634 315 286 59 67 chr4 6443108 6443243 -149186877 + MLT1A0 LTR MaLR 214 347 -18 6 634 1578 27 32 0 chr4 6444031 6444217 -149185903 - B2_Mm1t SINE B2 0 193 2 6 634 351 149 0 0 chr4 6444637 6444711 -149185409 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 634 1766 250 42 20 chr4 6445574 6446076 -149184044 - RLTR11A2 LTR ERVK -8 519 7 6 634 512 211 0 46 chr4 6446270 6446379 -149183741 + RLTR14 LTR ERV1 3 106 -276 6 634 1374 207 11 22 chr4 6446407 6446679 -149183441 + RLTR14 LTR ERV1 93 361 -21 6 634 326 162 162 0 chr4 6446685 6446753 -149183367 + PB1D9 SINE Alu 38 116 -4 6 634 773 266 38 23 chr4 6446958 6447227 -149182893 - LTRIS4 LTR ERV1 0 519 208 6 634 362 269 12 52 chr4 6447611 6447752 -149182368 - MLT1A1 LTR MaLR -8 400 224 6 634 320 218 0 11 chr4 6447793 6447881 -149182239 + GA-rich Low_complexity Low_complexity 2 88 0 6 634 2179 210 24 13 chr4 6448091 6448557 -149181563 - RLTR40 LTR ERVK -198 619 149 6 634 1741 204 39 25 chr4 6448557 6448919 -149181201 - ORR1D1 LTR MaLR 0 374 8 6 634 686 155 8 8 chr4 6448923 6449040 -149181080 - RLTR40 LTR ERVK -664 153 37 6 634 231 277 0 106 chr4 6449562 6449675 -149180445 + MLT1B LTR MaLR 133 233 -157 6 634 248 186 0 0 chr4 6449684 6449727 -149180393 - MTC LTR MaLR 0 421 379 6 634 2941 147 53 35 chr4 6449727 6450033 -149180087 - RLTR31_Mm LTR ERVK 0 561 250 6 634 612 44 22 0 chr4 6450033 6450124 -149179996 - L1_Mus2 LINE L1 -9 6557 6465 6 634 2941 147 53 35 chr4 6450124 6450179 -149179941 - RLTR31_Mm LTR ERVK -312 249 201 6 634 4344 158 123 1 chr4 6450179 6451033 -149179087 + RMER17B LTR ERVK 1 958 0 6 634 2941 147 53 35 chr4 6451033 6451221 -149178899 - RLTR31_Mm LTR ERVK -361 200 1 6 634 3252 200 28 25 chr4 6451222 6452068 -149178052 - RMER3D-int LTR ERVK -1 2841 1993 6 634 297 0 0 0 chr4 6452068 6452101 -149178019 + (T)n Simple_repeat Simple_repeat 1 33 0 6 634 1205 61 0 0 chr4 6452101 6452248 -149177872 - B1_Mus2 SINE Alu 0 147 1 6 634 32155 72 22 4 chr4 6452251 6456718 -149173402 - L1Md_F2 LINE L1 0 6582 2087 6 634 225 0 0 0 chr4 6456718 6456743 -149173377 + (TTA)n Simple_repeat Simple_repeat 2 26 0 6 634 32155 78 15 2 chr4 6456743 6457673 -149172447 - L1Md_F2 LINE L1 -3797 2086 1126 6 634 4820 98 19 3 chr4 6457673 6458393 -149171727 - L1VL4 LINE L1 -2073 1486 767 6 634 1395 79 11 0 chr4 6458393 6458583 -149171537 - B2_Mm1t SINE B2 0 193 2 6 634 4820 119 14 15 chr4 6458583 6459148 -149170972 - L1VL4 LINE L1 -5536 766 191 6 634 500 184 35 62 chr4 6459159 6459304 -149170816 - RMER3D-int LTR ERVK -2232 610 470 6 634 1323 242 63 35 chr4 6459401 6459864 -149170256 - RMER3D-int LTR ERVK -2366 476 1 6 634 2373 169 116 14 chr4 6459864 6460373 -149169747 - RLTR31_Mm LTR ERVK 0 561 1 6 634 1723 177 68 116 chr4 6460382 6460649 -149169471 - MTC LTR MaLR -44 377 140 6 634 1120 95 0 0 chr4 6460649 6460797 -149169323 - B1_Mus1 SINE Alu 0 148 1 6 634 1723 177 68 116 chr4 6460797 6460925 -149169195 - MTC LTR MaLR -282 139 1 6 634 300 267 77 29 chr4 6460925 6461014 -149169106 + MLT1B LTR MaLR 280 373 -17 6 634 945 258 101 11 chr4 6461086 6461364 -149168756 + Lx6 LINE L1 6069 6371 -1089 6 634 3144 206 40 20 chr4 6461368 6461659 -149168461 + Lx6 LINE L1 6596 6890 -570 6 634 525 55 0 0 chr4 6461659 6461732 -149168388 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 634 3144 206 40 20 chr4 6461732 6462122 -149167998 + Lx6 LINE L1 6891 7289 -171 6 634 1788 133 25 40 chr4 6462183 6462358 -149167762 + ORR1B2 LTR MaLR 43 219 -148 6 634 7911 26 15 3 chr4 6462358 6463276 -149166844 + RLTR13B3 LTR ERVK 1 929 0 6 634 1788 133 25 40 chr4 6463276 6463422 -149166698 + ORR1B2 LTR MaLR 220 359 -8 6 634 338 107 0 18 chr4 6463505 6463562 -149166558 + (CTTA)n Simple_repeat Simple_repeat 2 57 0 6 634 1768 70 9 0 chr4 6463567 6463795 -149166325 - L1_Mus2 LINE L1 -3 6563 6334 6 634 494 357 26 30 chr4 6464622 6464856 -149165264 - MLT1D LTR MaLR -4 501 269 6 634 513 0 0 0 chr4 6465211 6465268 -149164852 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 634 235 180 45 0 chr4 6465305 6465394 -149164726 + (CAGA)n Simple_repeat Simple_repeat 2 94 0 6 634 498 17 0 0 chr4 6465413 6465472 -149164648 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 634 738 274 174 79 chr4 6465597 6465930 -149164190 - MTEb LTR MaLR -5 365 1 6 634 334 247 35 0 chr4 6465935 6466020 -149164100 - MTEb-int LTR MaLR -21 1559 1472 6 634 2325 218 22 31 chr4 6466075 6466752 -149163368 + L1VL4 LINE L1 259 929 -5373 6 634 302 124 45 0 chr4 6467934 6468023 -149162097 + T-rich Low_complexity Low_complexity 3 95 0 6 634 1237 54 0 0 chr4 6468024 6468171 -149161949 - B1_Mus2 SINE Alu 0 147 1 6 634 228 67 0 0 chr4 6468180 6468210 -149161910 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 6 634 18215 169 22 23 chr4 6468970 6469876 -149160244 + Lx2B LINE L1 2085 2981 -2905 6 634 1311 130 0 5 chr4 6469876 6470070 -149160050 + B2_Mm2 SINE B2 2 194 -1 6 634 18215 164 20 26 chr4 6470070 6473066 -149157054 + Lx2B LINE L1 2982 5982 -1018 6 634 2043 248 58 16 chr4 6473068 6473568 -149156552 - RLTR20D LTR ERVK -2 566 46 6 634 3440 130 23 15 chr4 6473586 6473615 -149156505 + Lx2B LINE L1 5977 6005 -995 6 634 252 0 0 0 chr4 6473615 6473643 -149156477 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 634 3440 130 23 15 chr4 6473643 6474222 -149155898 + Lx2B LINE L1 6006 6589 -411 6 634 375 281 133 111 chr4 6474222 6474582 -149155538 + RLTR9E LTR ERVK 1 406 -3 6 634 552 315 23 18 chr4 6474852 6475072 -149155048 + ETnERV2-int LTR ERVK 328 548 -2766 6 634 4483 312 39 27 chr4 6475296 6478144 -149151976 + ETnERV2-int LTR ERVK 713 4258 -3148 6 634 3415 30 0 10 chr4 6478144 6478544 -149151576 + MTA_Mm LTR MaLR 1 396 0 6 634 9567 18 3 0 chr4 6478544 6479639 -149150481 + MTA_Mm-int LTR MaLR 1 1098 0 6 634 3427 25 0 10 chr4 6479639 6480039 -149150081 + MTA_Mm LTR MaLR 1 396 0 6 634 4483 224 11 9 chr4 6480039 6480796 -149149324 + ETnERV2-int LTR ERVK 4259 5018 -2388 6 634 7644 78 11 2 chr4 6480796 6482573 -149147547 - L1_Mus2 LINE L1 -2 6564 4774 6 634 239 242 29 43 chr4 6483006 6483075 -149147045 + MTE2b LTR MaLR 296 363 -16 6 634 473 213 147 0 chr4 6483075 6483211 -149146909 + Lx9 LINE L1 7268 7423 -221 6 634 1939 143 10 19 chr4 6483212 6483519 -149146601 - RLTR41 LTR ERV1 0 446 143 6 634 1263 94 0 0 chr4 6483752 6483932 -149146188 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 6 634 257 197 16 0 chr4 6483932 6483993 -149146127 + CT-rich Low_complexity Low_complexity 4 65 0 6 634 2864 165 62 31 chr4 6484009 6484143 -149145977 - RMER1A Other Other -1 1029 910 6 634 252 59 0 0 chr4 6484143 6484177 -149145943 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 634 2864 165 62 31 chr4 6484177 6484624 -149145496 - RMER1A Other Other -121 909 431 6 634 360 318 28 70 chr4 6484772 6484985 -149145135 + L1M5 LINE L1 4163 4366 -1780 6 634 25 51 0 0 chr4 6485115 6485154 -149144966 + AT_rich Low_complexity Low_complexity 1 39 0 6 634 207 0 0 0 chr4 6485161 6485184 -149144936 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 634 1190 36 0 0 chr4 6485187 6485326 -149144794 - B1_Mm SINE Alu -8 139 1 6 634 2182 68 4 4 chr4 6485326 6485607 -149144513 - L1_Mus1 LINE L1 -9 6558 6278 6 634 560 330 153 47 chr4 6485734 6486368 -149143752 + L1M5 LINE L1 4565 5265 -881 6 634 1138 181 11 85 chr4 6486476 6486747 -149143373 - MT2B LTR ERVL -3 598 348 6 634 929 161 0 81 chr4 6486731 6486941 -149143179 - ORR1C2 LTR MaLR -191 193 1 6 634 2540 58 0 0 chr4 6487192 6487517 -149142603 + L1Md_A LINE L1 6254 6578 -4 6 634 60 59 0 0 chr4 6487557 6487659 -149142461 + AT_rich Low_complexity Low_complexity 1 102 0 6 634 1186 24 30 0 chr4 6487985 6488151 -149141969 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 6 634 225 247 103 13 chr4 6489401 6489479 -149140641 - PB1D10 SINE Alu -22 95 11 6 634 297 308 150 25 chr4 6489735 6489895 -149140225 - B3 SINE B2 -10 206 27 6 634 588 191 91 0 chr4 6489983 6490093 -149140027 + B1_Mur2 SINE Alu 1 120 -29 6 634 1477 180 89 25 chr4 6490093 6490417 -149139703 + ORR1B2 LTR MaLR 23 367 0 6 634 218 111 0 62 chr4 6490428 6490476 -149139644 + A-rich Low_complexity Low_complexity 2 46 0 6 634 189 0 0 0 chr4 6491210 6491231 -149138889 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 634 353 227 15 0 chr4 6491513 6491579 -149138541 - ORR1D1 LTR MaLR -307 67 1 6 634 348 161 0 0 chr4 6491579 6491635 -149138485 - ORR1D1-int LTR MaLR 0 1370 1315 6 634 1587 214 26 20 chr4 6491613 6491956 -149138164 - ORR1D1-int LTR MaLR -170 1200 856 6 634 1217 239 48 133 chr4 6491987 6492461 -149137659 - ORR1D1-int LTR MaLR -887 622 189 6 634 2184 189 70 16 chr4 6492461 6493014 -149137106 - L1_Mur3 LINE L1 -3009 2871 2289 6 634 1528 99 5 19 chr4 6493031 6493247 -149136873 - ORR1A2 LTR MaLR -51 276 64 6 634 360 0 0 0 chr4 6493330 6493370 -149136750 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 7 634 856 118 22 0 chr4 6493389 6493525 -149136595 - B2_Mm2 SINE B2 -55 140 2 7 634 1215 150 34 10 chr4 6493532 6493740 -149136380 - RMER6B LTR ERVK 0 461 249 7 634 2868 36 2 140 chr4 6493827 6494277 -149135843 + RLTR10 LTR ERVK 1 388 -2 7 634 814 190 36 18 chr4 6494319 6494485 -149135635 - RLTR17 LTR ERVK -3 689 521 7 634 7526 72 4 13 chr4 6494499 6494753 -149135367 - L1_Mus3 LINE L1 0 6638 6384 7 634 233 29 29 0 chr4 6494753 6494787 -149135333 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 7 634 7526 78 3 13 chr4 6494787 6495694 -149134426 - L1_Mus3 LINE L1 -255 6383 5488 7 634 2868 165 54 36 chr4 6495694 6496216 -149133904 - RLTR17 LTR ERVK -161 531 1 7 634 1302 148 42 17 chr4 6496224 6496465 -149133655 - RMER6B LTR ERVK -214 247 1 7 634 2573 113 17 7 chr4 6496468 6496878 -149133242 - MYSERV6-int LTR ERVK -1195 7764 7351 7 634 779 155 1 14 chr4 6496879 6497010 -149133110 - MT2B LTR ERVL -118 483 367 7 634 852 110 5 3 chr4 6497031 6497161 -149132959 - ORR1A2 LTR MaLR -73 301 122 7 634 2557 239 98 14 chr4 6497164 6498117 -149132003 - L1_Mur3 LINE L1 -3579 2301 1269 6 634 264 122 0 0 chr4 6498124 6498165 -149131955 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 634 748 292 4 14 chr4 6498188 6498466 -149131654 - L1_Mur3 LINE L1 -6484 1244 970 6 634 310 284 125 27 chr4 6498747 6499123 -149130997 - L1MEc LINE L1 -5168 1232 820 7 634 645 285 60 70 chr4 6499231 6499446 -149130674 - ID_B1 SINE B4 -10 214 2 7 634 428 289 92 25 chr4 6499458 6499621 -149130499 - ID_B1 SINE B4 -26 198 25 7 634 339 352 46 9 chr4 6500048 6500157 -149129963 - L1MEc LINE L1 -5791 609 497 1 634 301 247 58 29 chr4 6500338 6500509 -149129611 - L1MEc LINE L1 -6162 238 63 1 634 238 279 72 85 chr4 6500814 6500967 -149129153 + L1M2 LINE L1 5493 5643 -546 2 634 842 156 0 7 chr4 6500967 6501122 -149128998 + CT-rich Low_complexity Low_complexity 1 154 0 3 634 961 124 21 0 chr4 6501124 6501269 -149128851 - B1_Mus1 SINE Alu 0 148 1 4 634 299 293 121 0 chr4 6501284 6501424 -149128696 + L1M2 LINE L1 5657 5813 -484 2 634 2996 180 45 5 chr4 6501440 6501998 -149128122 + Lx5 LINE L1 6369 6948 -102 5 634 251 175 0 0 chr4 6502273 6502313 -149127807 + polypurine Low_complexity Low_complexity 2 41 0 6 634 351 65 0 0 chr4 6502313 6502359 -149127761 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 7 634 283 269 86 77 chr4 6502927 6503044 -149127076 + MT2B LTR ERVL 138 255 -346 8 634 534 198 0 0 chr4 6502978 6503074 -149127046 + B1_Mus1 SINE Alu 36 131 -17 9 634 1051 209 132 36 chr4 6503411 6503714 -149126406 - IAPEY3_LTR LTR ERVK 0 332 1 1 634 455 252 49 10 chr4 6504219 6504423 -149125697 + Lx9 LINE L1 7416 7627 -17 1 634 2584 169 94 30 chr4 6504634 6505164 -149124956 + RMER15 LTR ERVL 1 564 -11 1 634 228 35 0 0 chr4 6505238 6505267 -149124853 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 634 693 293 73 53 chr4 6505938 6506432 -149123688 - L1MA4A LINE L1 -179 6213 5710 1 634 963 295 115 30 chr4 6506524 6507882 -149122238 - L1MA4A LINE L1 -664 5728 4224 1 634 243 290 18 18 chr4 6508061 6508170 -149121950 - L1MA4A LINE L1 -2251 4125 4017 1 634 1202 279 98 3 chr4 6508245 6508593 -149121527 - MTD LTR MaLR -36 383 3 1 634 1746 289 106 18 chr4 6508604 6510108 -149120012 - L1MA4A LINE L1 -2415 3964 2329 1 634 1115 109 0 0 chr4 6511420 6511567 -149118553 - B1_Mus1 SINE Alu -1 147 1 1 634 254 283 73 32 chr4 6511758 6511882 -149118238 + L1M2 LINE L1 5637 5765 -535 1 634 268 269 110 9 chr4 6511975 6512084 -149118036 + L1_Mur2 LINE L1 592 711 -6375 1 634 5585 154 76 20 chr4 6512142 6513460 -149116660 + L1_Mur2 LINE L1 886 2317 -3560 1 634 3113 35 3 3 chr4 6513460 6513832 -149116288 - L1Md_F2 LINE L1 -10 6572 6201 1 634 5585 152 50 24 chr4 6513832 6513986 -149116134 + L1_Mur2 LINE L1 2318 2464 -3413 1 634 11905 5 0 0 chr4 6513987 6515383 -149114737 + L1Md_A LINE L1 4191 5586 -297 2 634 8969 7 0 0 chr4 6515383 6516379 -149113741 + L1Md_A LINE L1 5587 6582 0 2 634 1666 133 4 0 chr4 6516379 6516658 -149113462 + L1_Mur2 LINE L1 2452 2731 -3146 1 634 6240 129 32 1 chr4 6516653 6517773 -149112347 + Lx LINE L1 5485 6639 -15 2 634 3282 140 124 45 chr4 6517787 6517833 -149112287 + L1_Mur2 LINE L1 4463 4499 -1378 1 634 2405 133 22 10 chr4 6517833 6518250 -149111870 + BGLII_Mus LTR ERVK 1 422 0 2 634 3282 140 124 45 chr4 6518250 6518994 -149111126 + L1_Mur2 LINE L1 4500 5315 -562 1 634 1158 62 6 58 chr4 6519012 6519184 -149110936 - B2_Mm2 SINE B2 -31 164 2 2 634 1231 130 142 8 chr4 6519184 6519424 -149110696 + L1_Mur2 LINE L1 5302 5573 -304 1 634 456 19 0 0 chr4 6519434 6519487 -149110633 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 634 1769 196 11 11 chr4 6519493 6519844 -149110276 + Lx5 LINE L1 6117 6467 -583 2 634 1467 220 3 7 chr4 6519838 6520136 -149109984 + Lx5 LINE L1 6570 6866 -184 2 634 1424 111 58 5 chr4 6520136 6520378 -149109742 - RLTR9D LTR ERVK -142 278 1 2 634 469 328 105 6 chr4 6520578 6520891 -149109229 - MER2 DNA MER2_type -1 344 1 2 634 290 292 135 23 chr4 6522350 6522483 -149107637 + MIRb SINE MIR 112 259 -9 2 634 935 269 21 7 chr4 6523787 6524068 -149106052 - Lx8 LINE L1 -942 6531 6247 2 634 234 250 10 42 chr4 6524071 6524167 -149105953 - Lx7 LINE L1 -1509 6187 6095 3 634 25 75 0 0 chr4 6524728 6524781 -149105339 + AT_rich Low_complexity Low_complexity 1 53 0 3 634 324 0 0 0 chr4 6524859 6524895 -149105225 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 634 1089 269 13 6 chr4 6525591 6525905 -149104215 - Lx6 LINE L1 -15 7445 7130 3 634 1443 278 89 4 chr4 6525904 6526366 -149103754 + Lx6 LINE L1 6592 7092 -368 3 634 2699 259 48 14 chr4 6526394 6527177 -149102943 - Lx6 LINE L1 -649 6811 6002 3 634 347 271 66 24 chr4 6527322 6527446 -149102674 + B1F SINE Alu 1 113 -36 3 634 231 36 0 0 chr4 6527566 6527594 -149102526 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 634 923 164 99 30 chr4 6529066 6529267 -149100853 - B3 SINE B2 0 216 2 3 634 37667 31 3 6 chr4 6530640 6537014 -149093106 - L1Md_T LINE L1 0 6582 234 3 634 536 264 24 54 chr4 6537118 6537286 -149092834 + RSINE1 SINE B4 3 165 0 3 634 677 246 70 20 chr4 6537431 6537630 -149092490 - B3 SINE B2 -7 209 1 3 634 2751 109 25 18 chr4 6540574 6541012 -149089108 - BGLII_B LTR ERVK 0 441 1 4 634 4527 161 62 4 chr4 6541012 6542019 -149088101 - MYSERV16_I-int LTR ERVK -1 2325 1261 4 634 1563 22 0 0 chr4 6542020 6542204 -149087916 - B2_Mm1a SINE B2 -4 189 6 4 634 2512 221 75 72 chr4 6542204 6543225 -149086895 - MYSERV16_I-int LTR ERVK -1057 1269 245 4 634 2534 188 73 48 chr4 6543502 6544171 -149085949 - RMER17C-int LTR ERVK -2551 687 2 4 634 1562 172 20 46 chr4 6544171 6544519 -149085601 - RMER17C LTR ERVK -3 407 69 4 634 6696 60 26 28 chr4 6544526 6545752 -149084368 - L1Md_F2 LINE L1 -2 6580 5330 4 634 3963 67 0 0 chr4 6545753 6546289 -149083831 + L1Md_F2 LINE L1 4757 5292 -591 4 634 518 95 35 35 chr4 6546290 6546377 -149083743 - RMER17C LTR ERVK -323 87 1 4 634 381 287 0 15 chr4 6546377 6546508 -149083612 - MYSERV6-int LTR ERVK -5417 3542 3414 4 634 3083 294 62 26 chr4 6547141 6548526 -149081594 + Lx7 LINE L1 5430 6839 -857 4 634 189 0 0 0 chr4 6548526 6548547 -149081573 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 634 1154 70 0 0 chr4 6548548 6548690 -149081430 - B1_Mus1 SINE Alu -5 143 2 4 634 3083 286 65 21 chr4 6548690 6548758 -149081362 + Lx7 LINE L1 6840 6905 -791 4 634 951 228 64 94 chr4 6548826 6549282 -149080838 - Lx7 LINE L1 -83 7613 7172 4 634 3390 184 95 28 chr4 6549274 6550063 -149080057 + Lx4B LINE L1 6213 7054 -4 4 634 14977 175 81 28 chr4 6550096 6550413 -149079707 - L1_Mur3 LINE L1 -693 5187 4876 5 634 2482 63 21 128 chr4 6550413 6550850 -149079270 + RLTR10 LTR ERVK 1 390 0 5 634 14977 175 81 28 chr4 6550850 6552849 -149077271 - L1_Mur3 LINE L1 -1005 4875 2732 5 634 297 0 0 0 chr4 6552849 6552882 -149077238 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 634 414 0 0 0 chr4 6552882 6552927 -149077193 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 79 14977 175 81 28 chr4 6552927 6553991 -149076129 - L1_Mur3 LINE L1 -3149 2731 1624 5 635 324 0 0 0 chr4 6553991 6554027 -149076093 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 635 279 0 0 0 chr4 6554027 6554057 -149076063 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 635 14977 189 60 23 chr4 6554057 6554670 -149075450 - L1_Mur3 LINE L1 -4257 1623 986 5 635 26 74 0 0 chr4 6554790 6554844 -149075276 + AT_rich Low_complexity Low_complexity 1 54 0 5 635 324 190 0 0 chr4 6555171 6555250 -149074870 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 635 222 143 0 0 chr4 6555251 6555300 -149074820 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 635 264 284 34 95 chr4 6555301 6555331 -149074789 + MT2B LTR ERVL 125 155 -446 5 635 378 0 0 0 chr4 6555331 6555373 -149074747 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 635 264 284 34 95 chr4 6555373 6555490 -149074630 + MT2B LTR ERVL 156 263 -338 5 635 313 284 99 56 chr4 6555376 6555518 -149074602 + ID_B1 SINE B4 76 223 -1 6 635 623 277 108 67 chr4 6556294 6556576 -149073544 + MT2A LTR ERVL 3 338 -263 6 635 321 26 0 0 chr4 6556576 6556614 -149073506 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 635 415 310 185 100 chr4 6556614 6556702 -149073418 + MT2A LTR ERVL 339 423 -178 6 635 477 0 0 0 chr4 6556702 6556755 -149073365 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 6 635 415 310 185 100 chr4 6556755 6556814 -149073306 + MT2A LTR ERVL 424 481 -120 6 635 5293 71 14 5 chr4 6556814 6557464 -149072656 - L1_Mus2 LINE L1 -3 6563 5908 6 635 415 310 185 100 chr4 6557464 6557584 -149072536 + MT2A LTR ERVL 482 601 0 6 635 222 249 65 26 chr4 6557679 6557785 -149072335 - MIRm SINE MIR -81 187 78 6 635 312 48 0 0 chr4 6558137 6558179 -149071941 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 635 261 179 107 0 chr4 6558184 6558240 -149071880 - B4 SINE B4 -230 62 1 6 635 21 0 0 0 chr4 6559177 6559198 -149070922 + AT_rich Low_complexity Low_complexity 1 21 0 6 635 235 315 14 0 chr4 6559623 6559696 -149070424 + L2a LINE L2 3349 3422 -4 7 635 655 343 19 5 chr4 6559883 6560094 -149070026 - RMER1A Other Other -649 381 168 7 635 1332 264 80 80 chr4 6560122 6560906 -149069214 - RMER1B Other Other -553 513 3 7 635 6029 54 7 0 chr4 6561501 6562296 -149067824 + L1_Mus1 LINE L1 5856 6567 0 7 635 243 316 136 0 chr4 6562344 6562499 -149067621 + L1M5 LINE L1 5688 5863 -301 7 635 364 314 61 56 chr4 6562734 6562919 -149067201 + B4A SINE B4 23 286 -6 7 635 310 42 42 0 chr4 6562954 6563002 -149067118 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 635 240 329 27 27 chr4 6563025 6563100 -149067020 + ID4_ SINE ID 9 83 0 7 635 398 259 106 9 chr4 6563728 6563841 -149066279 + RLTR18 LTR ERVK 63 186 -326 7 635 815 238 67 117 chr4 6564023 6564366 -149065754 + RLTR18 LTR ERVK 291 616 0 7 635 204 40 0 0 chr4 6564409 6564434 -149065686 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 635 588 295 143 28 chr4 6564722 6564973 -149065147 - MLT1H1 LTR MaLR -19 536 257 8 635 276 30 0 0 chr4 6565163 6565196 -149064924 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 635 192 77 0 0 chr4 6565199 6565225 -149064895 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 8 635 353 282 67 49 chr4 6565316 6565480 -149064640 + RMER15 LTR ERVL 407 573 -2 8 635 285 324 45 45 chr4 6565518 6565628 -149064492 - MLT1H1 LTR MaLR -409 182 73 8 635 4696 51 21 9 chr4 6565723 6566280 -149063840 - LTRIS2 LTR ERV1 0 564 1 8 635 186 133 0 0 chr4 6566694 6566724 -149063396 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 635 395 250 11 11 chr4 6566872 6566965 -149063155 + RMER15 LTR ERVL 467 559 -16 8 635 294 300 63 9 chr4 6566990 6567101 -149063019 - L2b LINE L2 0 3375 3259 8 635 260 250 75 54 chr4 6567218 6567311 -149062809 + MIR SINE MIR 81 175 -87 8 635 205 345 50 8 chr4 6567577 6567697 -149062423 + MIR SINE MIR 110 234 -28 8 635 984 309 39 36 chr4 6568181 6568544 -149061576 + MLT1A0 LTR MaLR 1 364 -1 9 635 4694 84 14 62 chr4 6568965 6570005 -149060115 - L1_Mus3 LINE L1 -360 6278 5289 9 635 962 63 21 7 chr4 6570031 6570175 -149059945 - L1_Mus3 LINE L1 -7 6631 6486 9 635 2460 109 9 0 chr4 6570204 6570543 -149059577 + L1_Mus3 LINE L1 6296 6637 -1 9 635 981 306 45 6 chr4 6570787 6571119 -149059001 + MER2 DNA MER2_type 1 345 0 9 635 22 0 0 0 chr4 6571164 6571186 -149058934 + AT_rich Low_complexity Low_complexity 1 22 0 9 635 439 318 52 41 chr4 6571429 6571638 -149058482 + MLT1J1 LTR MaLR 8 217 -231 9 635 4504 93 7 0 chr4 6571727 6572307 -149057813 - MT2B2 LTR ERVL 0 584 1 9 635 3435 205 65 56 chr4 6572988 6574215 -149055905 - RMER1B Other Other -6 1060 115 9 635 2823 70 45 11 chr4 6574215 6574589 -149055531 + L1Md_F2 LINE L1 6193 6579 -3 9 635 1317 252 62 91 chr4 6574589 6574710 -149055410 - RMER1B Other Other -908 158 39 9 635 360 320 10 0 chr4 6575101 6575198 -149054922 + PB1 SINE Alu 23 120 -7 1 635 257 229 0 0 chr4 6575246 6575294 -149054826 - ID_B1 SINE B4 -65 159 112 1 635 724 201 6 11 chr4 6575312 6575488 -149054632 + CT-rich Low_complexity Low_complexity 2 176 0 1 635 2232 109 60 34 chr4 6575489 6575881 -149054239 - RMER16 LTR ERVK -86 447 1 1 635 3449 80 29 0 chr4 6575884 6576336 -149053784 - RMER16-int LTR ERVK -4 5402 4938 1 635 38962 14 2 7 chr4 6576336 6582144 -149047976 + L1Md_A LINE L1 1 5586 -297 1 635 9517 9 0 0 chr4 6582144 6583140 -149046980 + L1Md_A LINE L1 5587 6582 0 1 635 3770 95 64 39 chr4 6583140 6583731 -149046389 - RMER16-int LTR ERVK -457 4949 4344 1 635 350 220 23 13 chr4 6583734 6583824 -149046296 - MTD LTR MaLR -15 406 307 1 635 1071 197 57 16 chr4 6583892 6584132 -149045988 + RMER19B LTR ERVK 357 576 -326 1 635 1963 126 10 196 chr4 6584137 6584641 -149045479 - RMER17C LTR ERVK 0 410 1 1 635 3479 133 106 18 chr4 6584641 6585252 -149044868 - RMER17C-int LTR ERVK 0 3238 2574 1 635 2407 198 50 19 chr4 6585272 6585756 -149044364 + RMER17C-int LTR ERVK 12 510 -2728 1 635 22 35 0 0 chr4 6585784 6585813 -149044307 + AT_rich Low_complexity Low_complexity 1 29 0 1 635 447 337 91 100 chr4 6585854 6586204 -149043916 + ORR1E LTR MaLR 3 349 -10 1 635 352 358 36 31 chr4 6586471 6586696 -149043424 + RMER15 LTR ERVL 337 562 -13 1 635 36 53 0 0 chr4 6586698 6586755 -149043365 + AT_rich Low_complexity Low_complexity 1 57 0 1 635 403 286 46 84 chr4 6586908 6587145 -149042975 - Tigger7 DNA MER2_type -9 2482 2255 1 635 500 345 30 6 chr4 6587183 6587349 -149042771 - Tigger7 DNA MER2_type -2317 174 5 1 635 644 344 195 8 chr4 6588289 6588640 -149041480 - MER47B DNA MER2_type 0 418 2 1 635 339 341 113 54 chr4 6588653 6588965 -149041155 + ORR1E LTR MaLR 4 323 -51 1 635 1203 318 47 23 chr4 6589012 6589498 -149040622 + MTE-int LTR MaLR 2 499 -1081 1 635 495 0 0 0 chr4 6590643 6590698 -149039422 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 635 2222 169 21 16 chr4 6590891 6591271 -149038849 + RLTR14 LTR ERV1 1 382 0 1 635 222 348 112 0 chr4 6591633 6591722 -149038398 + PB1 SINE Alu 11 109 -18 1 635 522 276 91 8 chr4 6591950 6592191 -149037929 + L1MA4 LINE L1 5629 5889 -411 1 635 219 146 0 0 chr4 6593067 6593108 -149037012 + (T)n Simple_repeat Simple_repeat 1 41 0 1 635 367 260 162 17 chr4 6595248 6595381 -149034739 - B4 SINE B4 -47 245 104 1 635 2013 215 54 63 chr4 6595388 6595909 -149034211 - RMER20A LTR ERVK 0 516 1 1 635 222 91 0 0 chr4 6595920 6595953 -149034167 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 1 635 263 239 90 0 chr4 6595954 6596021 -149034099 - B4 SINE B4 -219 73 1 1 635 307 344 53 8 chr4 6596448 6596580 -149033540 - LTR16A LTR ERVL 0 451 314 1 635 1098 274 37 102 chr4 6597211 6597613 -149032507 - MTE2a LTR MaLR -2 377 2 1 635 1252 56 142 0 chr4 6598031 6598193 -149031927 - B2_Mm1t SINE B2 -7 186 2 1 635 736 301 73 23 chr4 6598750 6599053 -149031067 - Lx8 LINE L1 -380 7093 6776 1 635 214 276 0 26 chr4 6599068 6599146 -149030974 + GA-rich Low_complexity Low_complexity 1 76 0 1 635 2141 138 87 0 chr4 6599750 6600105 -149030015 - ORR1B1 LTR MaLR -8 386 1 1 635 663 208 141 5 chr4 6600125 6600309 -149029811 + ID_B1 SINE B4 12 220 -4 1 635 239 299 34 95 chr4 6600196 6600344 -149029776 + B1_Mus1 SINE Alu 9 147 -1 1 635 296 24 24 0 chr4 6600856 6600897 -149029223 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 635 699 235 153 11 chr4 6600967 6601156 -149028964 - B3 SINE B2 0 216 1 1 635 494 16 16 0 chr4 6602047 6602110 -149028010 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 635 252 0 0 0 chr4 6602110 6602137 -149027983 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 635 881 259 80 40 chr4 6602167 6602441 -149027679 - B4A SINE B4 -6 286 2 1 635 404 311 29 0 chr4 6602716 6602819 -149027301 - PB1D7 SINE Alu -5 115 10 1 635 278 298 210 0 chr4 6602819 6602832 -149027288 - B4A SINE B4 -62 182 81 1 635 449 291 87 0 chr4 6603249 6603376 -149026744 + RLTR20B3 LTR ERVK 427 564 -13 1 635 411 267 9 65 chr4 6605332 6605440 -149024680 + PB1D10 SINE Alu 5 106 -11 1 635 756 255 77 114 chr4 6606782 6607079 -149023041 + B4 SINE B4 3 288 -4 1 635 564 195 0 0 chr4 6607117 6607266 -149022854 + (CA)n Simple_repeat Simple_repeat 1 149 0 1 635 734 204 3 10 chr4 6607317 6607491 -149022629 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 635 273 109 0 0 chr4 6607491 6607537 -149022583 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 1 635 734 145 6 22 chr4 6607537 6607641 -149022479 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 635 216 0 0 0 chr4 6609026 6609050 -149021070 + (T)n Simple_repeat Simple_repeat 1 24 0 1 635 225 0 0 0 chr4 6610529 6610554 -149019566 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1 635 1325 57 0 6 chr4 6610557 6610733 -149019387 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1 635 580 193 29 12 chr4 6610755 6610928 -149019192 + CT-rich Low_complexity Low_complexity 4 179 0 1 635 570 124 0 0 chr4 6610953 6611042 -149019078 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 635 378 221 35 225 chr4 6611043 6611212 -149018908 - B1F2 SINE Alu -8 141 5 1 635 200 200 25 0 chr4 6611451 6611491 -149018629 + G-rich Low_complexity Low_complexity 3 43 0 1 635 241 184 55 77 chr4 6612892 6613074 -149017046 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 1 635 218 70 0 65 chr4 6614201 6614247 -149015873 + (TGGGGG)n Simple_repeat Simple_repeat 6 48 0 1 635 558 0 0 0 chr4 6615801 6615863 -149014257 + (TATG)n Simple_repeat Simple_repeat 3 64 0 1 635 188 268 13 78 chr4 6617770 6617847 -149012273 + L2a LINE L2 3311 3382 -44 1 635 396 0 0 0 chr4 6617966 6618010 -149012110 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 635 31 26 0 0 chr4 6618150 6618188 -149011932 + AT_rich Low_complexity Low_complexity 1 38 0 1 635 935 288 120 72 chr4 6620351 6620919 -149009201 - RMER13A LTR ERVK -265 595 1 1 635 442 102 0 0 chr4 6620968 6621027 -149009093 + tRNA-Lys-AAG tRNA tRNA 18 76 0 1 635 942 297 39 54 chr4 6621215 6621574 -149008546 - RLTR26 LTR ERVK -212 430 60 1 635 4591 188 27 31 chr4 6621574 6622485 -149007635 + RMER13B LTR ERVK 1 908 0 1 635 378 309 50 93 chr4 6622485 6622544 -149007576 - RLTR26 LTR ERVK -801 59 1 1 635 189 270 73 93 chr4 6623387 6623538 -149006582 + MIRb SINE MIR 55 202 -66 1 635 186 43 0 0 chr4 6624003 6624026 -149006094 + (CCCCCT)n Simple_repeat Simple_repeat 2 24 0 1 635 217 340 0 0 chr4 6624047 6624100 -149006020 - ID4_ SINE ID -4 79 27 1 635 725 298 11 39 chr4 6626279 6626562 -149003558 + Lx9 LINE L1 7007 7281 -363 1 635 1107 307 60 52 chr4 6627096 6627459 -149002661 - Lx9 LINE L1 -141 7503 7140 1 635 332 22 22 0 chr4 6627459 6627504 -149002616 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1 635 713 183 46 0 chr4 6627504 6627635 -149002485 - B1_Mus1 SINE Alu -10 138 2 1 635 1107 307 60 52 chr4 6627635 6628074 -149002046 - Lx9 LINE L1 -505 7139 6695 1 635 1781 217 70 14 chr4 6628067 6628585 -149001535 + Lx8 LINE L1 5265 5811 -36 1 635 1117 104 0 0 chr4 6628749 6628913 -149001207 + L1_Mus1 LINE L1 6403 6566 -1 1 635 344 267 33 33 chr4 6629220 6629371 -149000749 + Lx8 LINE L1 6339 6489 -984 1 635 21 0 0 0 chr4 6630106 6630127 -148999993 + AT_rich Low_complexity Low_complexity 1 21 0 1 635 1025 210 177 0 chr4 6630149 6630459 -148999661 - Lx9 LINE L1 -54 7590 7226 1 635 286 264 28 0 chr4 6630989 6631061 -148999059 - ID4 SINE ID 0 83 10 1 635 974 53 5 55 chr4 6632187 6632406 -148997714 + (CA)n Simple_repeat Simple_repeat 1 207 0 1 635 1462 180 56 12 chr4 6632418 6632757 -148997363 + MTC LTR MaLR 1 409 -10 1 635 961 312 58 19 chr4 6632913 6633292 -148996828 - MARNA DNA Mariner -171 415 22 1 635 39 22 0 0 chr4 6633554 6633600 -148996520 + AT_rich Low_complexity Low_complexity 1 46 0 1 635 1052 71 6 77 chr4 6633637 6633805 -148996315 - L1_Mus1 LINE L1 0 6567 6412 1 635 394 277 126 42 chr4 6634008 6634294 -148995826 - L1MB1 LINE L1 -1 6167 5858 1 635 236 348 34 17 chr4 6634376 6634493 -148995627 - MIRb SINE MIR -131 137 19 1 635 651 26 0 0 chr4 6636152 6636229 -148993891 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 635 2262 65 16 10 chr4 6638781 6639092 -148991028 + L1Md_F2 LINE L1 6270 6582 0 1 635 466 309 94 30 chr4 6640727 6640994 -148989126 + B4A SINE B4 1 284 -8 1 635 243 103 0 0 chr4 6641032 6641071 -148989049 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 635 243 277 0 0 chr4 6643855 6643902 -148986218 + L2a LINE L2 3362 3408 -18 1 635 189 0 0 0 chr4 6644286 6644307 -148985813 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 635 23 68 0 0 chr4 6644410 6644454 -148985666 + AT_rich Low_complexity Low_complexity 1 44 0 1 635 396 0 0 0 chr4 6644624 6644668 -148985452 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 635 332 330 0 48 chr4 6648093 6648198 -148981922 - B4A SINE B4 -169 123 24 1 635 405 0 0 0 chr4 6648436 6648481 -148981639 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 635 1217 47 0 0 chr4 6648980 6649128 -148980992 - B1_Mus1 SINE Alu 0 148 1 1 635 317 325 12 0 chr4 6649691 6649771 -148980349 + ID SINE ID 4 84 -140 1 635 332 296 10 48 chr4 6649771 6649794 -148980326 + ID4 SINE ID 4 102 -50 1 635 343 332 49 12 chr4 6649863 6649998 -148980122 - B4A SINE B4 -123 169 29 1 635 455 307 93 41 chr4 6651379 6651543 -148978577 + Lx8 LINE L1 7192 7372 -101 1 635 1841 201 26 8 chr4 6651543 6651920 -148978200 + ORR1C2 LTR MaLR 1 384 0 1 635 455 307 93 41 chr4 6651920 6652023 -148978097 + Lx8 LINE L1 7373 7473 0 1 635 912 301 86 31 chr4 6653483 6653904 -148976216 + Lx9 LINE L1 6975 7418 -226 1 635 204 231 0 0 chr4 6653940 6653992 -148976128 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 635 266 0 0 29 chr4 6654129 6654164 -148975956 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 635 2880 58 31 5 chr4 6654164 6654547 -148975573 - LTRIS2 LTR ERV1 -81 483 91 2 635 740 176 7 22 chr4 6654805 6654944 -148975176 - B1_Mur3 SINE Alu -11 138 2 2 635 329 248 119 8 chr4 6655408 6655526 -148974594 + L1MA9 LINE L1 6179 6309 -3 2 635 21 0 0 0 chr4 6655643 6655664 -148974456 + AT_rich Low_complexity Low_complexity 1 21 0 2 635 232 380 88 68 chr4 6656301 6656744 -148973376 + L4 LINE RTE 1221 1672 -357 2 635 413 320 59 49 chr4 6657310 6657514 -148972606 + MER3 DNA MER1_type 4 209 0 2 635 247 338 0 0 chr4 6658193 6658264 -148971856 + ID4_ SINE ID 2 72 -11 2 635 248 0 0 30 chr4 6658266 6658299 -148971821 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 635 426 69 0 0 chr4 6659439 6659497 -148970623 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 635 514 257 77 36 chr4 6659656 6659850 -148970270 + RMER15 LTR ERVL 336 537 -38 2 635 757 214 65 0 chr4 6660870 6661024 -148969096 + ORR1D1 LTR MaLR 1 164 -210 2 635 423 0 0 0 chr4 6661028 6661075 -148969045 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 635 4425 156 75 34 chr4 6661079 6661995 -148968125 + RMER17B LTR ERVK 2 955 -3 2 635 838 225 38 80 chr4 6661995 6662221 -148967899 + ORR1D1 LTR MaLR 159 374 0 2 635 472 317 196 65 chr4 6662228 6662823 -148967297 + L1MEg LINE L1 864 1536 -4689 2 635 3279 117 76 47 chr4 6664507 6664927 -148965193 + Lx3A LINE L1 6365 6797 -184 2 635 225 0 0 0 chr4 6664927 6664952 -148965168 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 635 3279 117 76 47 chr4 6664952 6665124 -148964996 + Lx3A LINE L1 6798 6973 -8 2 635 369 0 0 0 chr4 6665625 6665666 -148964454 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 635 510 114 0 0 chr4 6665666 6665744 -148964376 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 635 481 338 45 32 chr4 6666072 6666384 -148963736 - MER74A LTR ERVL -12 546 231 2 635 2231 59 35 0 chr4 6666639 6666929 -148963191 - L1_Mus2 LINE L1 0 6566 6267 2 635 418 237 30 20 chr4 6667016 6667115 -148963005 + B3A SINE B2 1 100 -98 2 635 590 233 70 149 chr4 6667725 6667867 -148962253 + ID_B1 SINE B4 2 157 -67 2 635 920 109 72 0 chr4 6667867 6668005 -148962115 + B1_Mus1 SINE Alu 1 148 0 2 635 590 233 70 149 chr4 6668005 6668104 -148962016 + ID_B1 SINE B4 158 224 0 2 635 264 59 0 0 chr4 6668249 6668283 -148961837 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 635 228 35 0 0 chr4 6668769 6668798 -148961322 + (TTTTTA)n Simple_repeat Simple_repeat 1 29 0 2 635 305 330 73 9 chr4 6668800 6668910 -148961210 - PB1D10 SINE Alu 0 117 1 2 635 364 353 62 12 chr4 6669581 6669839 -148960281 - Lx9 LINE L1 -221 7423 7153 2 635 186 256 0 0 chr4 6670169 6670212 -148959908 - L3 LINE CR1 -3288 1201 1159 2 635 21 0 0 0 chr4 6670483 6670504 -148959616 + AT_rich Low_complexity Low_complexity 1 21 0 2 635 21 0 0 0 chr4 6671933 6671954 -148958166 + AT_rich Low_complexity Low_complexity 1 21 0 2 635 22 35 0 0 chr4 6673849 6673878 -148956242 + AT_rich Low_complexity Low_complexity 1 29 0 2 635 474 294 107 62 chr4 6674816 6675153 -148954967 + ORR1D1 LTR MaLR 23 374 0 2 635 240 111 0 0 chr4 6675173 6675209 -148954911 + (TCC)n Simple_repeat Simple_repeat 2 37 0 2 635 21 36 0 0 chr4 6677023 6677051 -148953069 + AT_rich Low_complexity Low_complexity 1 28 0 2 635 208 158 0 26 chr4 6678028 6678067 -148952053 + CT-rich Low_complexity Low_complexity 3 40 0 2 635 1068 97 23 6 chr4 6678068 6678244 -148951876 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 2 635 710 226 7 0 chr4 6678251 6678388 -148951732 - B1_Mur1 SINE Alu -10 139 2 2 635 965 274 5 0 chr4 6679664 6679872 -148950248 - B3 SINE B2 -6 210 2 2 635 264 389 9 17 chr4 6682771 6682886 -148947234 - MER5A1 DNA MER1_type 0 166 53 2 635 556 282 99 136 chr4 6683392 6684518 -148945602 + L1MC LINE L1 2915 4009 -2137 2 635 1144 75 7 0 chr4 6684518 6684665 -148945455 + B1_Mus1 SINE Alu 1 148 0 2 79 556 282 99 136 chr4 6684665 6684686 -148945434 + L1MC LINE L1 4010 4015 -2131 2 636 252 0 0 0 chr4 6684686 6684714 -148945406 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 636 556 282 99 136 chr4 6684714 6684924 -148945196 + L1MC LINE L1 4016 4183 -1963 2 636 674 24 12 0 chr4 6684924 6685008 -148945112 + (GAA)n Simple_repeat Simple_repeat 3 87 0 2 636 556 282 99 136 chr4 6685008 6685497 -148944623 + L1MC LINE L1 4184 4695 -1451 2 636 354 161 0 0 chr4 6686120 6686176 -148943944 + B3A SINE B2 1 56 -142 2 636 347 288 25 8 chr4 6686556 6686675 -148943445 + CT-rich Low_complexity Low_complexity 2 122 0 2 636 318 310 65 0 chr4 6686675 6686830 -148943290 + L1MC3 LINE L1 7310 7474 -311 2 636 266 229 0 12 chr4 6686838 6686922 -148943198 + Lx9 LINE L1 7517 7599 -45 2 636 900 108 0 0 chr4 6687151 6687299 -148942821 + (GA)n Simple_repeat Simple_repeat 1 148 0 2 636 447 275 43 52 chr4 6687977 6688092 -148942028 + B1_Mur2 SINE Alu 7 120 0 2 636 234 268 37 80 chr4 6688459 6688621 -148941499 + Tigger13a DNA MER2_type 195 349 -422 2 636 21 24 0 47 chr4 6688862 6688883 -148941237 + AT_rich Low_complexity Low_complexity 1 20 0 2 636 941 220 33 23 chr4 6688883 6689097 -148941023 - B3 SINE B2 0 216 1 2 636 21 24 0 47 chr4 6689097 6689118 -148941002 + AT_rich Low_complexity Low_complexity 1 21 0 2 636 24 32 0 0 chr4 6690117 6690148 -148939972 + AT_rich Low_complexity Low_complexity 1 31 0 2 636 4798 79 21 3 chr4 6690307 6690976 -148939144 + L1Md_F2 LINE L1 5862 6542 -40 2 636 340 52 34 17 chr4 6690976 6691035 -148939085 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2 636 357 82 0 0 chr4 6691049 6691098 -148939022 + (A)n Simple_repeat Simple_repeat 1 49 0 2 636 634 311 62 50 chr4 6691118 6691177 -148938943 - ORR1E LTR MaLR -11 348 289 2 636 183 42 0 0 chr4 6691177 6691201 -148938919 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 636 634 311 62 50 chr4 6691201 6691381 -148938739 - ORR1E LTR MaLR -71 288 106 2 636 258 193 0 0 chr4 6691735 6691792 -148938328 + T-rich Low_complexity Low_complexity 1 57 0 2 636 354 73 0 0 chr4 6691832 6691887 -148938233 - Lx2 LINE L1 -2 6995 6941 2 636 240 141 69 14 chr4 6692380 6692452 -148937668 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 2 636 585 288 0 69 chr4 6692491 6692666 -148937454 + RSINE1 SINE B4 3 165 0 2 636 446 218 6 45 chr4 6692671 6692849 -148937271 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 2 636 249 289 0 26 chr4 6693023 6693101 -148937019 + ID2 SINE ID 3 78 -5 2 636 258 56 0 0 chr4 6693350 6693386 -148936734 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 636 226 0 122 0 chr4 6694291 6694340 -148935780 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 636 516 244 65 8 chr4 6694854 6694978 -148935142 + B1F SINE Alu 1 131 -18 2 636 314 23 23 0 chr4 6694978 6695021 -148935099 + (CAAT)n Simple_repeat Simple_repeat 4 47 0 2 636 637 304 7 0 chr4 6695308 6695456 -148934664 + B1F SINE Alu 1 149 0 2 636 298 283 24 24 chr4 6696253 6696376 -148933744 + CT-rich Low_complexity Low_complexity 2 124 0 2 636 377 301 48 10 chr4 6696393 6696497 -148933623 - B1_Mur4 SINE Alu -42 108 1 2 636 523 45 0 93 chr4 6697126 6697223 -148932897 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 2 636 34 0 0 0 chr4 6697679 6697713 -148932407 + AT_rich Low_complexity Low_complexity 1 34 0 2 636 295 264 75 32 chr4 6698374 6698468 -148931652 - B3 SINE B2 -116 100 3 2 636 385 309 76 138 chr4 6698644 6698854 -148931266 - B3A SINE B2 -1 197 1 2 636 21 36 0 0 chr4 6700439 6700467 -148929653 + AT_rich Low_complexity Low_complexity 1 28 0 2 636 453 181 61 41 chr4 6700778 6700876 -148929244 + RSINE1 SINE B4 25 124 -41 2 636 30 27 0 0 chr4 6700996 6701033 -148929087 + AT_rich Low_complexity Low_complexity 1 37 0 2 636 213 65 0 0 chr4 6702710 6702741 -148927379 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 636 1288 277 18 64 chr4 6702866 6703380 -148926740 + Lx7 LINE L1 6878 7367 -329 2 636 242 203 27 13 chr4 6703389 6703464 -148926656 + T-rich Low_complexity Low_complexity 5 80 0 2 636 246 293 73 29 chr4 6703696 6703833 -148926287 + B1F SINE Alu 2 144 -5 2 636 239 319 28 0 chr4 6703842 6703914 -148926206 + ID4 SINE ID 9 82 -1 2 636 968 55 0 8 chr4 6704179 6704307 -148925813 - B1_Mm SINE Alu -1 146 20 2 636 395 177 0 119 chr4 6704213 6704322 -148925798 - MT2B LTR ERVL -337 264 169 2 636 213 65 0 0 chr4 6704465 6704496 -148925624 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 636 461 333 122 28 chr4 6705805 6706004 -148924116 + B4A SINE B4 1 223 -69 2 636 450 0 0 0 chr4 6706004 6706054 -148924066 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2 636 461 333 122 28 chr4 6706054 6706101 -148924019 + B4A SINE B4 224 269 -23 2 636 420 299 67 0 chr4 6706286 6706420 -148923700 - B3A SINE B2 -55 143 1 2 636 219 36 0 0 chr4 6706590 6706618 -148923502 + (ATGTG)n Simple_repeat Simple_repeat 2 29 0 2 636 21 0 0 0 chr4 6707151 6707172 -148922948 + AT_rich Low_complexity Low_complexity 1 21 0 2 636 654 296 95 54 chr4 6707849 6708185 -148921935 - ORR1E LTR MaLR -9 350 1 2 636 561 30 0 0 chr4 6710739 6710806 -148919314 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 636 207 337 38 19 chr4 6711226 6711332 -148918788 + L3 LINE CR1 62 169 -4320 2 636 23 33 0 0 chr4 6711975 6712005 -148918115 + GC_rich Low_complexity Low_complexity 1 30 0 2 636 225 266 45 30 chr4 6712612 6712678 -148917442 - ID4_ SINE ID -13 70 4 2 636 238 340 31 41 chr4 6712695 6712793 -148917327 - PB1D10 SINE Alu -7 110 14 2 636 211 341 62 5 chr4 6712822 6712944 -148917176 + MIRc SINE MIR 104 225 -37 2 636 217 0 61 0 chr4 6713622 6713655 -148916465 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 3 636 26 30 0 0 chr4 6713718 6713751 -148916369 + AT_rich Low_complexity Low_complexity 1 33 0 3 636 25 31 0 0 chr4 6713933 6713965 -148916155 + AT_rich Low_complexity Low_complexity 1 32 0 3 636 305 218 0 13 chr4 6716852 6716931 -148913189 + (TATG)n Simple_repeat Simple_repeat 3 80 0 3 636 22 35 0 0 chr4 6716931 6716960 -148913160 + AT_rich Low_complexity Low_complexity 1 29 0 3 636 181 98 49 0 chr4 6717189 6717230 -148912890 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 636 242 210 0 0 chr4 6719543 6719605 -148910515 + A-rich Low_complexity Low_complexity 1 62 0 3 636 504 311 68 84 chr4 6719751 6720074 -148910046 + AmnSINE1 SINE SINE 159 476 -99 3 636 687 256 71 30 chr4 6720568 6720765 -148909355 + B3 SINE B2 1 205 -11 3 636 237 159 0 0 chr4 6720766 6720810 -148909310 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 636 945 150 0 0 chr4 6721085 6721265 -148908855 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 636 216 239 0 0 chr4 6721265 6721311 -148908809 + (CACG)n Simple_repeat Simple_repeat 1 46 0 3 636 267 31 0 0 chr4 6721766 6721798 -148908322 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 3 636 1335 243 76 6 chr4 6721914 6722258 -148907862 + ORR1D1 LTR MaLR 1 368 -6 3 636 432 286 9 26 chr4 6723597 6723712 -148906408 + PB1D10 SINE Alu 3 115 -2 3 636 816 216 81 0 chr4 6724091 6724276 -148905844 - ORR1D2 LTR MaLR 0 370 171 3 636 1015 206 16 17 chr4 6726703 6726930 -148903190 + RLTR11A LTR ERVK 308 526 -2 3 636 1931 142 52 67 chr4 6727683 6728069 -148902051 + ORR1C2 LTR MaLR 1 380 -4 3 636 1074 265 45 45 chr4 6728503 6728772 -148901348 - B4A SINE B4 -22 270 2 3 636 22 0 0 0 chr4 6730151 6730173 -148899947 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 243 0 0 0 chr4 6730260 6730287 -148899833 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 636 342 0 0 0 chr4 6730289 6730327 -148899793 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 636 604 261 50 75 chr4 6731408 6731432 -148898688 - B3A SINE B2 -4 194 173 3 636 423 0 0 0 chr4 6731432 6731479 -148898641 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 636 604 261 50 75 chr4 6731479 6731653 -148898467 - B3A SINE B2 -26 172 1 3 636 1010 90 7 46 chr4 6733342 6733494 -148896626 + B1_Mus2 SINE Alu 2 147 0 3 636 189 0 0 0 chr4 6733494 6733515 -148896605 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 3 636 528 111 0 0 chr4 6733979 6734069 -148896051 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 636 494 262 0 10 chr4 6734319 6734439 -148895681 - PB1D7 SINE Alu 0 120 2 3 636 183 356 11 65 chr4 6735599 6735692 -148894428 - MIRm SINE MIR -111 165 78 3 636 2110 72 10 13 chr4 6735768 6736066 -148894054 + L1_Mus3 LINE L1 6342 6638 0 3 636 324 0 0 0 chr4 6736446 6736482 -148893638 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 636 336 254 35 63 chr4 6736482 6736625 -148893495 - RLTR15 LTR ERVK -220 139 1 3 636 307 396 34 17 chr4 6736969 6737146 -148892974 - ORR1E LTR MaLR -176 183 4 3 636 180 354 61 38 chr4 6737369 6737501 -148892619 - MIR3 SINE MIR -70 138 4 3 636 23 33 0 0 chr4 6737992 6738022 -148892098 + AT_rich Low_complexity Low_complexity 1 30 0 3 636 285 128 37 130 chr4 6738110 6738218 -148891902 - Lx9 LINE L1 -1409 6235 6138 3 636 1846 238 40 94 chr4 6738289 6739072 -148891048 - Lx7 LINE L1 0 7696 6957 3 636 275 299 0 0 chr4 6739109 6739176 -148890944 - ID4 SINE ID -13 70 4 3 636 306 0 0 0 chr4 6740381 6740415 -148889705 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 636 306 0 0 0 chr4 6740415 6740448 -148889672 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 636 395 270 49 1 chr4 6740781 6740890 -148889230 + B1F1 SINE Alu 1 117 0 3 636 718 253 26 22 chr4 6741091 6741298 -148888822 + MTD LTR MaLR 11 221 -186 3 636 597 49 0 0 chr4 6741516 6741597 -148888523 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 636 225 0 0 0 chr4 6741597 6741621 -148888499 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 636 21 0 0 0 chr4 6743134 6743155 -148886965 + AT_rich Low_complexity Low_complexity 1 21 0 3 636 899 219 39 15 chr4 6744375 6744579 -148885541 - B3 SINE B2 -6 210 2 3 636 268 290 139 10 chr4 6744699 6744800 -148885320 + PB1D7 SINE Alu 2 115 -5 3 636 787 200 168 0 chr4 6744940 6745125 -148884995 - URR1A DNA MER1_type -5 221 6 3 636 775 291 51 8 chr4 6745136 6745372 -148884748 + MTEa LTR MaLR 131 376 -3 3 636 289 259 46 69 chr4 6746335 6746422 -148883698 - PB1 SINE Alu -30 97 13 3 636 361 302 19 19 chr4 6746435 6746543 -148883577 - MIR SINE MIR -119 143 36 3 636 258 233 169 17 chr4 6746757 6746875 -148883245 - MIR SINE MIR -5 257 122 3 636 354 45 0 0 chr4 6748058 6748102 -148882018 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 636 351 0 0 0 chr4 6748612 6748651 -148881469 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 636 519 219 26 9 chr4 6748659 6748774 -148881346 + B3 SINE B2 98 214 -2 3 636 7288 53 0 4 chr4 6752249 6753203 -148876917 - L1Md_F2 LINE L1 0 6582 5633 3 636 304 120 0 0 chr4 6753305 6753355 -148876765 - Lx4A LINE L1 -7 7051 7002 3 636 1119 254 10 110 chr4 6756147 6756219 -148873901 - B4A SINE B4 -13 279 231 3 636 1133 194 9 5 chr4 6756219 6756431 -148873689 - B3 SINE B2 -1 215 3 3 636 1119 254 10 110 chr4 6756431 6756668 -148873452 - B4A SINE B4 -62 230 1 3 636 192 300 14 28 chr4 6758504 6758576 -148871544 - L2a LINE L2 -1 3425 3355 3 636 24 53 0 0 chr4 6759451 6759489 -148870631 + AT_rich Low_complexity Low_complexity 1 38 0 3 636 22 0 0 0 chr4 6759519 6759541 -148870579 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 231 268 14 0 chr4 6761060 6761131 -148868989 + L1M3e LINE L1 41 112 -6918 3 636 21 36 0 0 chr4 6761447 6761475 -148868645 + AT_rich Low_complexity Low_complexity 1 28 0 3 636 237 33 0 0 chr4 6761750 6761780 -148868340 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 636 210 53 0 116 chr4 6762795 6762838 -148867282 + (TAA)n Simple_repeat Simple_repeat 2 39 0 3 636 586 69 11 0 chr4 6764483 6764570 -148865550 - Lx2A1 LINE L1 -391 6617 6530 3 636 885 117 126 37 chr4 6764566 6764780 -148865340 + Lx2A1 LINE L1 6770 7002 -6 3 636 515 122 0 11 chr4 6764784 6764875 -148865245 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 3 636 25 95 0 0 chr4 6767605 6767679 -148862441 + AT_rich Low_complexity Low_complexity 1 74 0 3 636 201 74 0 0 chr4 6769627 6769654 -148860466 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 636 330 26 0 0 chr4 6772065 6772104 -148858016 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 636 665 302 52 55 chr4 6772309 6772704 -148857416 + MLT2B4 LTR ERVL 4 519 -37 3 636 447 0 31 16 chr4 6772704 6772768 -148857352 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 3 636 322 305 53 107 chr4 6772768 6772808 -148857312 + MLT2B4 LTR ERVL 520 556 0 3 636 279 359 0 0 chr4 6772866 6772958 -148857162 + PB1D10 SINE Alu 6 97 -20 3 636 220 308 19 0 chr4 6773690 6773742 -148856378 + B4A SINE B4 1 53 -239 3 636 248 339 73 0 chr4 6773773 6773882 -148856238 + B4 SINE B4 172 288 -4 3 636 301 302 94 0 chr4 6774598 6774704 -148855416 - Tigger5 DNA MER2_type 0 2406 2291 3 636 407 149 0 51 chr4 6774764 6774842 -148855278 + L1_Mus1 LINE L1 242 315 -6323 3 636 22525 86 20 2 chr4 6774838 6780693 -148849427 + L1_Mus1 LINE L1 639 6565 -2 3 636 510 278 11 106 chr4 6780706 6780791 -148849329 - Tigger5 DNA MER2_type -2235 171 89 3 636 291 299 0 0 chr4 6780791 6780858 -148849262 + ID4_ SINE ID 1 67 -16 3 636 399 21 0 0 chr4 6780868 6780916 -148849204 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 636 510 278 11 106 chr4 6780916 6781008 -148849112 - Tigger5 DNA MER2_type -2318 88 1 3 636 453 66 0 0 chr4 6781858 6781919 -148848201 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 636 279 0 0 0 chr4 6781919 6781949 -148848171 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 636 244 349 0 0 chr4 6782268 6782351 -148847769 + ID4_ SINE ID 1 83 0 3 636 198 218 109 0 chr4 6787013 6787068 -148843052 + MIRc SINE MIR 185 245 -23 3 636 385 279 27 7 chr4 6789826 6789974 -148840146 + L1MA6 LINE L1 5373 5523 -777 3 636 27 0 0 0 chr4 6789975 6790002 -148840118 + AT_rich Low_complexity Low_complexity 1 27 0 3 636 985 284 160 8 chr4 6790033 6790690 -148839430 + L1MA6 LINE L1 5508 6264 -36 3 636 22 56 0 0 chr4 6790821 6790857 -148839263 + AT_rich Low_complexity Low_complexity 1 36 0 3 636 236 316 21 0 chr4 6791545 6791640 -148838480 - L1MC2 LINE L1 -194 6150 6054 3 636 522 316 68 69 chr4 6792655 6792967 -148837153 + B4 SINE B4 2 281 -11 3 636 769 251 68 32 chr4 6793469 6793859 -148836261 + L1MA6 LINE L1 5586 5996 -304 3 636 342 360 156 0 chr4 6794128 6794314 -148835806 + ID_B1 SINE B4 5 219 -5 3 636 3481 13 5 0 chr4 6794716 6795108 -148835012 + MTA_Mm LTR MaLR 3 396 0 3 636 605 249 54 50 chr4 6795645 6795903 -148834217 - Lx8 LINE L1 -28 7445 7187 3 636 490 282 24 0 chr4 6797827 6797951 -148832169 - MER5A DNA MER1_type -51 138 12 3 636 450 0 0 0 chr4 6798963 6799013 -148831107 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 636 204 97 0 0 chr4 6799014 6799045 -148831075 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 636 201 74 0 0 chr4 6799120 6799147 -148830973 + (GGAGAA)n Simple_repeat Simple_repeat 6 32 0 3 636 395 348 65 14 chr4 6799179 6799610 -148830510 + L1MB2 LINE L1 5686 6138 -33 3 636 697 176 42 0 chr4 6799625 6799744 -148830376 + B3 SINE B2 7 130 -86 3 636 727 188 123 5 chr4 6799897 6800084 -148830036 + B3 SINE B2 4 212 -4 3 636 257 208 86 49 chr4 6802616 6802697 -148827423 + MER103 DNA DNA 17 100 -66 4 636 300 253 92 31 chr4 6804134 6804232 -148825888 + B1F SINE Alu 46 149 0 4 636 368 341 86 39 chr4 6805384 6805573 -148824547 + ORR1E LTR MaLR 3 204 -155 4 636 228 67 0 0 chr4 6805573 6805603 -148824517 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 636 368 341 86 39 chr4 6805603 6805749 -148824371 + ORR1E LTR MaLR 205 353 -6 4 636 243 0 0 0 chr4 6806908 6806935 -148823185 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 636 520 189 24 0 chr4 6807125 6807252 -148822868 + CT-rich Low_complexity Low_complexity 2 131 0 4 636 185 243 0 14 chr4 6807264 6807335 -148822785 + CT-rich Low_complexity Low_complexity 3 72 0 4 636 330 252 46 9 chr4 6810981 6811089 -148819031 + PB1D9 SINE Alu 1 112 -8 4 636 355 267 13 0 chr4 6811614 6811689 -148818431 + ID4 SINE ID 4 79 -4 4 636 429 20 0 0 chr4 6812644 6812694 -148817426 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 636 548 248 16 0 chr4 6812751 6812872 -148817248 + B1_Mur1 SINE Alu 24 146 -3 4 636 387 121 0 0 chr4 6812932 6812990 -148817130 + HY1 scRNA scRNA 2 59 -53 4 636 194 0 39 0 chr4 6815520 6815546 -148814574 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 637 192 339 37 52 chr4 6817263 6817397 -148812723 + MIRc SINE MIR 37 168 -100 4 637 580 154 26 0 chr4 6818474 6818591 -148811529 + (CATA)n Simple_repeat Simple_repeat 2 121 0 4 637 306 0 0 0 chr4 6818895 6818929 -148811191 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 637 994 270 110 6 chr4 6819425 6819760 -148810360 + ORR1D2 LTR MaLR 1 370 0 4 637 527 312 49 84 chr4 6820213 6820416 -148809704 - B3A SINE B2 0 198 3 4 637 437 250 9 9 chr4 6820422 6820535 -148809585 - PB1D10 SINE Alu 0 117 5 4 637 462 278 251 35 chr4 6820849 6821080 -148809040 + B4 SINE B4 2 282 -10 4 637 325 335 80 45 chr4 6822014 6822214 -148807906 + MIRc SINE MIR 37 243 -25 4 637 1013 290 31 23 chr4 6823333 6823682 -148806438 - Lx6 LINE L1 -27 7433 7082 4 637 301 294 29 0 chr4 6825114 6825216 -148804904 + PB1D10 SINE Alu 3 107 -10 4 637 332 182 11 0 chr4 6828803 6828891 -148801229 + CT-rich Low_complexity Low_complexity 2 90 0 4 637 423 0 0 0 chr4 6831841 6831888 -148798232 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 637 1200 83 0 0 chr4 6831888 6832045 -148798075 - B2_Mm2 SINE B2 -38 157 1 4 637 602 262 74 32 chr4 6832063 6832252 -148797868 - B3A SINE B2 0 198 2 4 637 385 269 0 0 chr4 6834477 6834555 -148795565 - BC1_Mm scRNA scRNA -73 79 2 4 637 211 355 98 16 chr4 6834921 6835044 -148795076 - MIR SINE MIR -56 152 20 4 637 448 305 24 41 chr4 6835136 6835259 -148794861 + B1F SINE Alu 22 142 -7 4 637 351 0 0 0 chr4 6835283 6835322 -148794798 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 637 405 0 0 0 chr4 6835322 6835366 -148794754 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 637 277 292 0 14 chr4 6835589 6835662 -148794458 + ID2 SINE ID 2 73 -10 4 637 423 0 0 0 chr4 6837116 6837163 -148792957 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 637 276 344 0 0 chr4 6837249 6837339 -148792781 - PB1 SINE Alu 0 127 38 4 637 297 0 0 0 chr4 6838064 6838097 -148792023 + (T)n Simple_repeat Simple_repeat 1 33 0 4 637 185 0 40 0 chr4 6839335 6839360 -148790760 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 637 351 65 0 0 chr4 6839494 6839540 -148790580 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 637 222 136 0 0 chr4 6841995 6842039 -148788081 + (A)n Simple_repeat Simple_repeat 1 44 0 4 637 197 394 52 16 chr4 6842323 6842573 -148787547 - L2a LINE L2 -38 3388 3130 4 637 195 251 99 1 chr4 6843475 6843563 -148786557 - MIR SINE MIR -72 196 105 4 637 468 282 31 0 chr4 6843809 6844004 -148786116 + L1MB3 LINE L1 5975 6175 -8 4 637 1242 183 4 22 chr4 6844200 6844429 -148785691 + URR1B DNA MER1_type 1 225 0 4 637 234 0 0 0 chr4 6847363 6847389 -148782731 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 637 261 292 0 53 chr4 6847700 6847776 -148782344 + ID4_ SINE ID 12 83 0 4 637 236 246 105 0 chr4 6848174 6848231 -148781889 + RSINE1 SINE B4 96 158 -7 4 637 185 194 0 0 chr4 6848881 6848917 -148781203 + L3 LINE CR1 4435 4470 -19 4 637 21 36 0 0 chr4 6849471 6849499 -148780621 + AT_rich Low_complexity Low_complexity 1 28 0 4 637 429 70 0 0 chr4 6851004 6851061 -148779059 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 637 233 302 103 11 chr4 6851104 6851191 -148778929 - MARNA DNA Mariner -6 580 486 4 637 707 62 10 0 chr4 6852837 6852934 -148777186 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 4 637 483 18 0 0 chr4 6853385 6853441 -148776679 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 637 187 297 95 0 chr4 6858084 6858158 -148771962 - L4 LINE RTE -243 1786 1706 4 637 452 108 21 0 chr4 6860028 6860121 -148769999 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 4 637 227 152 22 0 chr4 6861557 6861603 -148768517 + GA-rich Low_complexity Low_complexity 3 49 0 4 637 359 345 58 21 chr4 6864599 6864839 -148765281 - RCHARR1 DNA MER1_type -1 973 725 4 637 609 275 7 14 chr4 6864839 6864979 -148765141 + B3 SINE B2 1 139 -77 4 637 417 129 0 0 chr4 6864979 6865049 -148765071 + (CATA)n Simple_repeat Simple_repeat 2 71 0 4 637 641 236 180 12 chr4 6865095 6865339 -148764781 + B4A SINE B4 2 286 -6 4 637 270 305 88 59 chr4 6865613 6865749 -148764371 - ID_B1 SINE B4 -2 222 83 4 637 708 292 21 34 chr4 6865815 6866015 -148764105 - B4 SINE B4 -5 287 68 4 637 389 241 26 26 chr4 6866294 6866409 -148763711 + BC1_Mm scRNA scRNA 7 121 -31 4 637 22 0 0 0 chr4 6868350 6868372 -148761748 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 254 324 0 0 chr4 6869214 6869285 -148760835 + ID4_ SINE ID 2 72 -11 4 637 271 352 65 16 chr4 6869567 6869691 -148760429 + B4 SINE B4 75 204 -88 4 637 542 271 15 15 chr4 6869589 6869724 -148760396 + B1_Mur4 SINE Alu 15 149 -1 4 637 195 132 36 36 chr4 6869730 6869785 -148760335 + GA-rich Low_complexity Low_complexity 1 55 0 4 637 2090 101 3 16 chr4 6869820 6870141 -148759979 + Lx LINE L1 6332 6648 -6 4 637 24 0 0 0 chr4 6872557 6872581 -148757539 + AT_rich Low_complexity Low_complexity 1 24 0 4 637 360 366 30 18 chr4 6872812 6872976 -148757144 - MIR3 SINE MIR -6 202 37 4 637 372 210 0 0 chr4 6873710 6873791 -148756329 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 637 328 186 0 33 chr4 6873866 6873927 -148756193 + HAL1-3A_ME LINE L1 1977 2035 -823 4 637 21 0 0 0 chr4 6874620 6874641 -148755479 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 214 150 25 0 chr4 6874738 6874778 -148755342 + BC1_Mm scRNA scRNA 3 43 -109 4 637 207 323 20 29 chr4 6875751 6875853 -148754267 + GA-rich Low_complexity Low_complexity 3 103 0 4 637 252 0 0 0 chr4 6875857 6875885 -148754235 + (CTG)n Simple_repeat Simple_repeat 3 30 0 4 637 351 0 0 0 chr4 6875885 6875924 -148754196 + (ATG)n Simple_repeat Simple_repeat 3 41 0 4 637 319 256 10 100 chr4 6876654 6876670 -148753450 - PB1D10 SINE Alu 0 117 27 4 637 365 265 12 12 chr4 6876670 6876754 -148753366 - ID_B1 SINE B4 -33 191 108 4 637 818 235 44 48 chr4 6877703 6877931 -148752189 - MTD LTR MaLR -192 227 1 4 637 247 260 11 33 chr4 6878329 6878512 -148751608 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 637 351 0 0 0 chr4 6878724 6878763 -148751357 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 637 328 288 0 0 chr4 6879864 6879930 -148750190 + ID4_ SINE ID 8 73 -10 4 637 210 259 0 79 chr4 6879884 6879947 -148750173 + B4 SINE B4 29 86 -206 4 637 218 245 55 36 chr4 6880550 6880605 -148749515 - ID4_ SINE ID -1 82 27 4 637 381 316 75 29 chr4 6882412 6882585 -148747535 + MER34 LTR ERV1 359 539 -3 4 637 329 43 0 21 chr4 6883229 6883277 -148746843 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 637 300 53 0 0 chr4 6886930 6886968 -148743152 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 637 22 0 0 0 chr4 6887090 6887112 -148743008 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 681 13 0 0 chr4 6890332 6890410 -148739710 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 637 294 0 0 61 chr4 6891236 6891285 -148738835 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 637 434 289 39 0 chr4 6891934 6892062 -148738058 + B1F1 SINE Alu 5 137 -12 4 637 409 283 0 0 chr4 6892280 6892379 -148737741 - PB1D10 SINE Alu -9 108 10 4 637 349 336 204 0 chr4 6892545 6892658 -148737462 + RSINE1 SINE B4 7 142 -23 4 637 363 89 0 0 chr4 6892659 6892715 -148737405 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 637 189 358 91 29 chr4 6893294 6893504 -148736616 + L2 LINE L2 1837 2059 -1360 4 637 1082 272 63 42 chr4 6893865 6894275 -148735845 - MTD LTR MaLR 0 419 1 4 637 26 0 0 0 chr4 6894636 6894662 -148735458 + AT_rich Low_complexity Low_complexity 1 26 0 4 637 338 339 56 8 chr4 6894870 6894995 -148735125 - B1F1 SINE Alu -9 140 10 4 637 32 26 0 0 chr4 6895581 6895620 -148734500 + AT_rich Low_complexity Low_complexity 1 39 0 4 637 441 210 0 12 chr4 6895772 6895854 -148734266 - ID4_ SINE ID 0 83 3 4 637 510 17 0 0 chr4 6896429 6896488 -148733632 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 5 637 2161 179 52 12 chr4 6896591 6896993 -148733127 + MTC LTR MaLR 1 418 -3 5 637 56 48 0 0 chr4 6898418 6898502 -148731618 + AT_rich Low_complexity Low_complexity 1 84 0 5 637 194 91 0 29 chr4 6902759 6902793 -148727327 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 637 210 306 0 0 chr4 6903098 6903147 -148726973 - PB1D7 SINE Alu -57 63 15 5 637 463 192 19 57 chr4 6904901 6905006 -148725114 + PB1D9 SINE Alu 20 120 0 5 637 450 0 0 0 chr4 6905663 6905713 -148724407 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 637 359 127 16 0 chr4 6907737 6907800 -148722320 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 637 229 227 45 0 chr4 6913368 6913434 -148716686 + CT-rich Low_complexity Low_complexity 3 71 0 5 637 477 0 0 0 chr4 6916138 6916191 -148713929 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 637 22 0 0 0 chr4 6917216 6917238 -148712882 + AT_rich Low_complexity Low_complexity 1 22 0 5 637 200 53 0 116 chr4 6917679 6917722 -148712398 + A-rich Low_complexity Low_complexity 1 38 0 5 637 234 258 32 0 chr4 6917807 6917869 -148712251 + GA-rich Low_complexity Low_complexity 2 65 0 5 637 385 209 165 6 chr4 6920486 6920645 -148709475 + Lx7 LINE L1 5699 5896 -1800 5 637 315 324 0 10 chr4 6920939 6921042 -148709078 + ID_B1 SINE B4 123 224 0 5 637 5238 100 26 1 chr4 6921157 6921911 -148708209 - Lx LINE L1 0 6654 5882 5 637 471 332 135 20 chr4 6924381 6924891 -148705229 - L1ME1 LINE L1 -75 6104 5543 5 637 2768 163 27 32 chr4 6924891 6925418 -148704702 - RLTR28 LTR ERVL 0 524 1 5 637 471 332 135 20 chr4 6925418 6925507 -148704613 - L1ME1 LINE L1 -637 5542 5436 5 637 656 292 9 19 chr4 6925714 6925927 -148704193 - Lx6 LINE L1 -27 7433 7223 5 637 1340 169 212 3 chr4 6925930 6926227 -148703893 + ORR1B2 LTR MaLR 4 362 -5 5 637 789 317 66 10 chr4 6926230 6926604 -148703516 - Lx5 LINE L1 -834 6862 6450 5 637 376 162 40 35 chr4 6926612 6926785 -148703335 + (TTTA)n Simple_repeat Simple_repeat 2 175 0 5 637 1103 206 77 15 chr4 6926799 6926838 -148703282 - Lx6 LINE L1 -668 6792 6736 5 637 213 39 0 0 chr4 6926838 6926864 -148703256 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 637 6350 215 55 22 chr4 6926864 6928364 -148701756 - Lx6 LINE L1 -725 6735 4917 5 637 351 0 0 0 chr4 6928364 6928403 -148701717 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 637 6350 209 28 28 chr4 6928403 6928591 -148701529 - Lx6 LINE L1 -964 4916 4732 5 637 453 36 0 0 chr4 6928591 6928646 -148701474 + (TTA)n Simple_repeat Simple_repeat 3 57 0 5 637 6350 209 28 28 chr4 6928646 6929068 -148701052 - Lx6 LINE L1 -1149 4731 4330 5 637 7338 119 4 4 chr4 6929077 6930844 -148699276 - L1_Mus4 LINE L1 -10 6626 4862 5 637 1786 198 0 10 chr4 6930835 6931227 -148698893 - Lx6 LINE L1 -1537 4343 3956 5 637 11756 85 15 16 chr4 6931251 6933664 -148696456 - L1Md_F2 LINE L1 -2 6580 4164 5 637 13236 83 4 4 chr4 6933657 6936266 -148693854 - L1Md_F2 LINE L1 -2634 3249 642 5 637 1653 145 3 33 chr4 6936265 6936565 -148693555 - L1Md_F2 LINE L1 -6131 507 217 5 637 1129 219 39 0 chr4 6936572 6936851 -148693269 - Lx6 LINE L1 -1926 3954 3665 5 637 3853 213 53 101 chr4 6936841 6938224 -148691896 - Lx6 LINE L1 -3254 2626 1306 5 637 7459 44 18 0 chr4 6938224 6939128 -148690992 + L1Md_F2 LINE L1 5648 6567 -15 5 637 3853 210 45 136 chr4 6939128 6939593 -148690527 - Lx6 LINE L1 -4575 1305 904 5 637 570 29 0 0 chr4 6939596 6939664 -148690456 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 637 24 53 0 0 chr4 6940522 6940560 -148689560 + AT_rich Low_complexity Low_complexity 1 38 0 5 637 321 337 153 28 chr4 6940792 6941183 -148688937 + L1M2 LINE L1 4471 4910 -1233 5 637 342 0 0 0 chr4 6942919 6942957 -148687163 + (CCA)n Simple_repeat Simple_repeat 3 40 0 5 637 243 0 0 0 chr4 6942957 6942984 -148687136 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 637 450 0 0 0 chr4 6944433 6944483 -148685637 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 637 380 239 92 50 chr4 6944486 6944605 -148685515 + B2_Mm2 SINE B2 4 127 -68 5 637 345 159 0 0 chr4 6944633 6944696 -148685424 + (TATG)n Simple_repeat Simple_repeat 2 64 0 5 637 1020 277 121 30 chr4 6945289 6945951 -148684169 - L1_Rod LINE L1 -29 5818 5097 5 637 468 171 0 54 chr4 6945967 6946078 -148684042 + Lx6 LINE L1 4627 4731 -1149 5 637 642 113 0 0 chr4 6946083 6946180 -148683940 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 5 637 5210 186 26 68 chr4 6946186 6946725 -148683395 + Lx6 LINE L1 4724 5261 -619 5 637 342 0 0 0 chr4 6946725 6946763 -148683357 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 5 79 6806 215 66 55 chr4 6946763 6948880 -148681240 + Lx6 LINE L1 5262 7449 -11 5 638 330 363 118 52 chr4 6950143 6950506 -148679614 + MLT1J2 LTR MaLR 44 430 -18 5 638 233 29 29 0 chr4 6951032 6951066 -148679054 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 638 1092 16 0 0 chr4 6951366 6951492 -148678628 + (TTCTC)n Simple_repeat Simple_repeat 5 130 0 5 638 237 236 18 0 chr4 6951492 6951547 -148678573 + CT-rich Low_complexity Low_complexity 3 58 0 5 638 1311 74 0 0 chr4 6951591 6951767 -148678353 + (TCTCC)n Simple_repeat Simple_repeat 3 178 0 5 638 340 325 44 44 chr4 6951775 6951933 -148678187 - HAL1-3A_ME LINE L1 -419 2439 2282 5 638 351 150 9 45 chr4 6951943 6952055 -148678065 + C-rich Low_complexity Low_complexity 5 112 0 5 638 312 212 91 110 chr4 6952055 6952209 -148677911 - HAL1-3A_ME LINE L1 -423 2435 2285 5 638 369 0 0 0 chr4 6952418 6952459 -148677661 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 638 274 250 36 22 chr4 6952982 6953121 -148676999 + (TA)n Simple_repeat Simple_repeat 2 142 0 5 638 287 180 36 0 chr4 6953158 6953269 -148676851 + (TA)n Simple_repeat Simple_repeat 2 116 0 5 638 435 19 0 0 chr4 6953270 6953322 -148676798 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 638 326 279 65 53 chr4 6954250 6954420 -148675700 + L1M5 LINE L1 5523 5694 -430 5 638 345 122 0 0 chr4 6955127 6955176 -148674944 - HAL1-3A_ME LINE L1 -834 2024 1976 5 638 459 261 0 0 chr4 6955176 6955434 -148674686 + (TG)n Simple_repeat Simple_repeat 1 258 0 5 638 369 285 137 112 chr4 6955435 6955668 -148674452 - B4A SINE B4 0 292 54 5 638 423 0 0 0 chr4 6955744 6955791 -148674329 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 638 10876 109 39 4 chr4 6955873 6957062 -148673058 + L1_Mus3 LINE L1 4161 5395 -488 5 638 4971 80 0 6 chr4 6957062 6957740 -148672380 + L1Md_F2 LINE L1 5909 6582 0 5 638 10876 98 17 10 chr4 6957740 6958966 -148671154 + L1_Mus3 LINE L1 5396 6634 -4 5 638 2719 243 69 18 chr4 6959839 6960521 -148669599 - Lx6 LINE L1 -4 7456 6740 5 638 318 350 139 0 chr4 6960522 6960659 -148669461 - HAL1-3A_ME LINE L1 -419 2439 2284 5 638 876 142 7 26 chr4 6960660 6960934 -148669186 + CT-rich Low_complexity Low_complexity 1 268 0 5 638 2138 215 37 7 chr4 6960934 6961370 -148668750 - Lx6 LINE L1 -810 6650 6202 5 638 320 337 0 0 chr4 6961519 6961602 -148668518 - B3A SINE B2 -114 84 2 5 638 732 305 50 10 chr4 6963021 6963405 -148666715 - L1MB7 LINE L1 -294 5890 5492 5 638 1260 237 39 34 chr4 6963439 6963823 -148666297 + RMER17C LTR ERVK 2 387 -23 5 638 359 256 53 107 chr4 6963870 6964076 -148666044 - L1MB7 LINE L1 -763 5383 5189 5 638 37 76 0 0 chr4 6964086 6964165 -148665955 + AT_rich Low_complexity Low_complexity 1 79 0 5 638 311 0 26 0 chr4 6964521 6964560 -148665560 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 638 4363 247 67 16 chr4 6964562 6966189 -148663931 - Lx6 LINE L1 -169 7291 5467 5 638 385 352 66 38 chr4 6966899 6967082 -148663038 + MER44D DNA MER2_type 22 209 -496 5 638 290 279 62 0 chr4 6967110 6967239 -148662881 + MER44D DNA MER2_type 468 604 -101 5 638 6355 234 65 16 chr4 6967294 6968837 -148661283 + Lx7 LINE L1 6074 7692 -4 5 638 23 0 0 0 chr4 6969723 6969746 -148660374 + AT_rich Low_complexity Low_complexity 1 23 0 5 638 926 64 96 0 chr4 6969757 6969882 -148660238 + B1_Mm SINE Alu 1 137 -10 5 638 261 0 0 0 chr4 6969882 6969911 -148660209 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 638 303 167 0 0 chr4 6970454 6970520 -148659600 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 638 418 162 14 0 chr4 6970532 6970606 -148659514 - B3 SINE B2 -141 75 1 5 638 321 169 0 0 chr4 6970752 6970811 -148659309 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 638 1635 202 102 16 chr4 6971378 6971751 -148658369 - MTD LTR MaLR -14 405 1 5 638 839 180 82 58 chr4 6971818 6972024 -148658096 - B3 SINE B2 -4 212 2 5 638 2630 32 48 88 chr4 6972033 6972410 -148657710 + RLTR10B2 LTR ERVK 4 365 0 5 638 234 384 100 15 chr4 6972410 6972680 -148657440 + L2 LINE L2 2764 3056 -363 5 638 637 269 74 40 chr4 6972937 6973436 -148656684 - L1MD LINE L1 -2831 3315 2800 5 638 3917 57 2 8 chr4 6973990 6974484 -148655636 + L1_Mus1 LINE L1 6076 6566 -1 5 638 668 304 112 42 chr4 6974507 6975266 -148654854 - L1MB5 LINE L1 -251 5923 5101 5 638 273 379 36 64 chr4 6976590 6976841 -148653279 + MLT1J1 LTR MaLR 31 274 -170 5 638 27 29 0 0 chr4 6977064 6977098 -148653022 + AT_rich Low_complexity Low_complexity 1 34 0 5 638 1278 283 129 27 chr4 6977333 6977998 -148652122 - L1MC1 LINE L1 -26 6307 5575 5 638 560 299 69 11 chr4 6977998 6978187 -148651933 + MTD LTR MaLR 1 200 -219 5 638 21 0 0 0 chr4 6978280 6978301 -148651819 + AT_rich Low_complexity Low_complexity 1 21 0 5 638 7155 75 29 0 chr4 6978389 6979737 -148650383 + L1_Mus1 LINE L1 5182 6567 0 5 638 290 315 11 11 chr4 6979916 6980006 -148650114 + MTD LTR MaLR 284 373 -46 5 638 365 238 214 23 chr4 6980014 6980229 -148649891 - L1MC1 LINE L1 -741 5592 5337 5 638 205 356 41 41 chr4 6980689 6980812 -148649308 + L2a LINE L2 2832 2954 -465 5 638 234 395 44 54 chr4 6980825 6981074 -148649046 + L2a LINE L2 3039 3274 -152 5 638 576 0 0 0 chr4 6981074 6981138 -148648982 + (TTA)n Simple_repeat Simple_repeat 3 66 0 5 638 234 395 44 54 chr4 6981138 6981276 -148648844 + L2a LINE L2 3275 3421 -5 5 638 26 0 0 0 chr4 6981329 6981355 -148648765 + AT_rich Low_complexity Low_complexity 1 26 0 5 638 753 116 0 0 chr4 6981410 6981556 -148648564 + (GA)n Simple_repeat Simple_repeat 1 146 0 5 638 576 77 0 0 chr4 6983203 6983281 -148646839 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 638 7935 61 9 4 chr4 6983382 6985120 -148645000 - L1Md_F3 LINE L1 -15 6569 4813 5 638 13765 92 2 9 chr4 6985118 6987632 -148642488 - L1Md_F3 LINE L1 -2775 3108 615 5 638 1343 260 9 15 chr4 6988297 6988640 -148641480 + MTD LTR MaLR 1 341 -78 5 638 286 329 86 0 chr4 6988660 6988812 -148641308 + ERVL-int LTR ERVL 4798 4962 -795 5 638 226 323 0 0 chr4 6989044 6989106 -148641014 + MIRc SINE MIR 108 169 -99 5 638 348 325 52 13 chr4 6989554 6989707 -148640413 + MLT1A LTR MaLR 3 161 -213 5 638 30924 110 26 2 chr4 6989763 6995630 -148634490 + L1_Mus1 LINE L1 587 6567 0 5 638 531 0 0 0 chr4 6995631 6995690 -148634430 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 638 14999 107 15 3 chr4 6996994 7000000 -148630120 - L1_Mus2 LINE L1 0 6638 3530 5 638 887 131 0 0 chr4 7000026 7000156 -148629964 + B1_Mus2 SINE Alu 5 134 -13 1 638 437 50 17 0 chr4 7000156 7000216 -148629904 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 2 638 13955 135 16 2 chr4 7000216 7003198 -148626922 - L1Md_F LINE L1 -2367 3516 556 3 638 1390 248 31 31 chr4 7004537 7004954 -148625166 + MYSERV6-int LTR ERVK 3990 4406 -4553 4 638 3364 179 59 9 chr4 7004967 7005822 -148624298 + MYSERV6-int LTR ERVK 8110 8905 -54 4 638 750 272 41 38 chr4 7005822 7006166 -148623954 + RLTR15 LTR ERVK 1 345 -14 5 638 388 311 46 0 chr4 7006271 7006509 -148623611 - L1M5 LINE L1 -1377 4769 4521 6 638 405 312 151 61 chr4 7006635 7007045 -148623075 - L1M5 LINE L1 -1820 4326 3880 6 638 312 300 156 0 chr4 7007620 7007780 -148622340 - MER2 DNA MER2_type -53 292 108 7 638 3779 45 26 0 chr4 7007827 7008290 -148621830 - MT2C_Mm LTR ERVL 0 475 1 8 638 3422 299 20 30 chr4 7008290 7009674 -148620446 + ETnERV-int LTR ERVK 60 1496 -1818 9 638 446 196 0 11 chr4 7009678 7009771 -148620349 + ETnERV2-int LTR ERVK 6063 6154 -1252 1 638 1193 135 126 15 chr4 7009795 7010039 -148620081 + RLTR9A LTR ERVK 94 368 0 1 638 353 359 15 8 chr4 7010611 7010743 -148619377 + RSINE1 SINE B4 12 144 -21 1 638 269 303 67 15 chr4 7010872 7011006 -148619114 + Lx7 LINE L1 7168 7308 -388 1 638 211 71 48 0 chr4 7011335 7011377 -148618743 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 1 638 421 207 55 40 chr4 7011407 7011581 -148618539 - L1MD LINE L1 -797 5349 5170 1 638 677 278 159 32 chr4 7011976 7012378 -148617742 + Charlie1 DNA MER1_type 1443 1895 -886 1 638 1638 134 124 0 chr4 7012392 7012683 -148617437 + IAPEY3_LTR LTR ERVK 1 327 -5 1 638 840 112 35 7 chr4 7012686 7012830 -148617290 + IAPEY3-int LTR ERVK 1 148 -7532 1 638 998 141 9 58 chr4 7012830 7013154 -148616966 + IAPEY3-int LTR ERVK 550 952 -6629 1 638 1545 194 122 19 chr4 7013274 7013767 -148616353 + IAPEY3-int LTR ERVK 192 663 -5474 1 638 261 314 8 8 chr4 7013944 7014063 -148616057 + IAPEY3-int LTR ERVK 822 940 -5602 1 638 279 235 50 20 chr4 7014090 7014190 -148615930 + IAPEY3-int LTR ERVK 1462 1564 -6017 1 638 310 211 0 0 chr4 7014209 7014266 -148615854 + IAP-d-int LTR ERVK 447 503 -6039 1 638 1223 138 112 0 chr4 7014266 7014490 -148615630 + IAP-d-int LTR ERVK 5007 5255 -1287 1 638 1600 133 48 0 chr4 7014490 7014821 -148615299 + IAPEY3-int LTR ERVK 6965 7337 -343 1 638 1103 176 103 18 chr4 7014839 7015168 -148614952 + IAPEz-int LTR ERVK 6125 6481 0 2 638 1581 151 124 0 chr4 7015168 7015459 -148614661 + IAPEY3_LTR LTR ERVK 1 327 -5 2 638 655 230 0 28 chr4 7015920 7016063 -148614057 - B1_Mur1 SINE Alu -10 139 1 2 638 1586 169 93 43 chr4 7016270 7016691 -148613429 - RMER1B Other Other -5 1061 620 2 638 1230 272 32 10 chr4 7017020 7017332 -148612788 + MTE2a LTR MaLR 59 377 -2 2 638 391 325 51 9 chr4 7017671 7017930 -148612190 + L1MC2 LINE L1 5969 6234 -99 2 638 243 280 93 0 chr4 7018445 7018520 -148611600 + ID4_ SINE ID 2 83 0 2 638 198 0 0 0 chr4 7018609 7018631 -148611489 + (T)n Simple_repeat Simple_repeat 1 22 0 2 638 273 29 0 0 chr4 7018905 7018939 -148611181 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 638 426 69 0 0 chr4 7019134 7019192 -148610928 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 638 723 275 6 28 chr4 7019661 7019837 -148610283 - B3A SINE B2 -26 172 1 2 638 23 0 0 0 chr4 7020199 7020222 -148609898 + AT_rich Low_complexity Low_complexity 1 23 0 3 638 216 0 0 0 chr4 7020453 7020477 -148609643 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 638 539 316 43 43 chr4 7020517 7020679 -148609441 - RSINE1 SINE B4 -2 163 2 3 638 23 33 0 0 chr4 7021103 7021133 -148608987 + AT_rich Low_complexity Low_complexity 1 30 0 3 638 269 89 22 0 chr4 7021243 7021288 -148608832 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 638 285 321 59 124 chr4 7022169 7022246 -148607874 + RLTR23 LTR ERV1 76 155 -275 3 638 243 0 0 0 chr4 7022246 7022273 -148607847 + (AGCTG)n Simple_repeat Simple_repeat 5 31 0 3 638 285 321 59 124 chr4 7022273 7022550 -148607570 + RLTR23 LTR ERV1 156 406 -24 3 638 203 61 30 0 chr4 7022937 7022970 -148607150 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 638 1171 34 7 40 chr4 7023114 7023266 -148606854 + B1_Mm SINE Alu 1 147 0 3 638 2936 21 3 0 chr4 7023902 7024238 -148605882 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 638 17470 15 3 0 chr4 7024238 7026279 -148603841 - IAPEz-int LTR ERVK 0 6481 4435 3 638 20493 33 41 10 chr4 7026276 7028903 -148601217 - IAPEz-int LTR ERVK -3767 2714 8 3 638 2936 21 3 0 chr4 7028903 7029239 -148600881 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 638 322 237 17 26 chr4 7034131 7034248 -148595872 - Tigger7 DNA MER2_type -100 2391 2276 4 638 293 270 11 11 chr4 7034250 7034340 -148595780 - Tigger7 DNA MER2_type -2373 118 29 4 638 283 284 0 39 chr4 7034905 7034982 -148595138 + ID4 SINE ID 9 82 -1 4 638 406 242 136 16 chr4 7034977 7035197 -148594923 + MTE2a-int LTR MaLR 1151 1576 -4 4 638 832 285 89 60 chr4 7035199 7035501 -148594619 + MTE2a LTR MaLR 1 311 -68 4 638 1504 219 6 33 chr4 7035627 7035957 -148594163 - RLTR17 LTR ERVK -77 615 295 4 638 36 0 0 0 chr4 7035964 7036000 -148594120 + AT_rich Low_complexity Low_complexity 1 36 0 4 638 1555 198 9 41 chr4 7036000 7036316 -148593804 - RLTR17 LTR ERVK -386 306 1 4 638 735 312 33 17 chr4 7036778 7037019 -148593101 + B4A SINE B4 48 292 0 4 638 489 76 0 0 chr4 7037035 7037101 -148593019 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 638 275 256 51 14 chr4 7038016 7038232 -148591888 + L1MC3 LINE L1 5208 5429 -2356 4 638 552 297 129 70 chr4 7038724 7039235 -148590885 + L1MC3 LINE L1 6446 6986 -799 4 638 246 250 198 37 chr4 7039337 7039499 -148590621 + L1MC3 LINE L1 7051 7238 -547 4 638 576 303 129 38 chr4 7039848 7040112 -148590008 + RMER15 LTR ERVL 274 561 -14 4 638 763 201 0 48 chr4 7040189 7040335 -148589785 + B1_Mus2 SINE Alu 3 141 -6 4 638 702 84 0 0 chr4 7040353 7040460 -148589660 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 638 419 318 129 10 chr4 7040486 7040680 -148589440 + L1MC3 LINE L1 7504 7720 -65 4 638 368 111 0 16 chr4 7040974 7040990 -148589130 + (TTTTC)n Simple_repeat Simple_repeat 5 20 0 5 638 1079 117 6 0 chr4 7040990 7041161 -148588959 + (TCTCC)n Simple_repeat Simple_repeat 5 176 0 5 638 368 111 0 16 chr4 7041161 7041208 -148588912 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 5 638 945 98 91 0 chr4 7041211 7041343 -148588777 - B1_Mus1 SINE Alu -2 146 3 5 638 264 59 0 0 chr4 7041455 7041489 -148588631 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5 638 4078 237 42 29 chr4 7041504 7042611 -148587509 - Lx5 LINE L1 -47 7003 5883 5 638 7108 86 3 1 chr4 7042617 7043894 -148586226 - L1_Mus1 LINE L1 -1 6566 5288 5 638 14525 125 26 1 chr4 7043903 7047325 -148582795 - L1Md_T LINE L1 0 6582 2912 5 638 36225 47 7 2 chr4 7047339 7053530 -148576590 - L1Md_A LINE L1 0 6582 360 5 638 378 306 93 22 chr4 7053566 7053921 -148576199 - L1MEc LINE L1 -3260 3059 2680 6 638 21 36 0 0 chr4 7054051 7054079 -148576041 + AT_rich Low_complexity Low_complexity 1 28 0 6 638 234 233 0 31 chr4 7054100 7054195 -148575925 - L1MEc LINE L1 -4682 1733 1642 6 638 414 277 160 51 chr4 7054203 7054378 -148575742 - B3A SINE B2 0 198 5 6 638 251 114 23 0 chr4 7054907 7054951 -148575169 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 6 638 667 168 6 117 chr4 7054951 7055113 -148575007 - B1_Mur1 SINE Alu 0 149 6 6 638 231 178 16 258 chr4 7054977 7055159 -148574961 - MT2B LTR ERVL -323 278 141 6 638 575 261 42 12 chr4 7056232 7056490 -148573630 + L1MA6 LINE L1 4718 4981 -1162 6 638 604 244 16 0 chr4 7056513 7056636 -148573484 + RSINE1 SINE B4 5 129 -36 6 638 728 315 72 32 chr4 7056680 7056959 -148573161 + B4 SINE B4 2 291 -1 6 638 345 255 3 24 chr4 7057003 7057092 -148573028 + L1MA6 LINE L1 5218 5313 -984 6 638 1891 139 47 49 chr4 7057092 7057477 -148572643 + Lx LINE L1 6270 6653 -1 6 638 523 299 56 30 chr4 7057477 7057815 -148572305 + L1MA6 LINE L1 5314 5660 -631 6 638 286 321 80 54 chr4 7057861 7057973 -148572147 + PB1D10 SINE Alu 3 117 0 7 638 398 314 60 28 chr4 7058006 7058291 -148571829 + L1MA6 LINE L1 5801 6094 -206 6 638 750 349 21 14 chr4 7058292 7058577 -148571543 - MER21B LTR ERV1 -530 333 47 7 638 23 33 0 0 chr4 7059075 7059105 -148571015 + AT_rich Low_complexity Low_complexity 1 30 0 7 638 3733 16 44 56 chr4 7060683 7061164 -148568956 + IAPLTR2_Mm LTR ERVK 1 475 0 7 638 311 380 130 13 chr4 7061258 7061565 -148568555 + L1MEc LINE L1 51 393 -6007 7 638 607 331 81 35 chr4 7062739 7062999 -148567121 + B4A SINE B4 1 272 -20 7 638 288 0 0 0 chr4 7063041 7063073 -148567047 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 638 477 0 0 0 chr4 7063275 7063328 -148566792 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 7 638 272 284 0 0 chr4 7063328 7063402 -148566718 + (CATA)n Simple_repeat Simple_repeat 2 75 0 7 638 771 232 0 0 chr4 7063525 7063667 -148566453 + B1_Mur3 SINE Alu 1 142 -7 7 638 25 51 0 0 chr4 7063704 7063743 -148566377 + AT_rich Low_complexity Low_complexity 1 39 0 8 638 702 98 0 0 chr4 7063743 7063865 -148566255 + (TC)n Simple_repeat Simple_repeat 1 122 0 8 638 291 109 22 0 chr4 7063884 7063930 -148566190 - B1_Mus2 SINE Alu -23 124 78 8 638 225 0 0 0 chr4 7064093 7064118 -148566002 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 638 1432 277 35 15 chr4 7064172 7064626 -148565494 - Lx6 LINE L1 -28 7432 6970 8 638 352 333 0 0 chr4 7065259 7065343 -148564777 + B1F SINE Alu 10 93 -56 8 638 282 116 0 0 chr4 7065362 7065405 -148564715 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 8 638 1945 104 14 0 chr4 7065817 7066095 -148564025 + ORR1A2 LTR MaLR 46 327 0 8 638 1151 31 12 12 chr4 7066202 7066364 -148563756 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 8 638 22 70 0 0 chr4 7066677 7066720 -148563400 + AT_rich Low_complexity Low_complexity 1 43 0 8 638 3405 194 67 25 chr4 7066911 7068126 -148561994 + Lx5 LINE L1 5067 6355 -695 9 638 1490 301 63 2 chr4 7069499 7070009 -148560111 - Lx8 LINE L1 -351 7122 6582 9 638 428 330 47 94 chr4 7070097 7070478 -148559642 + ORR1D2 LTR MaLR 4 366 -4 9 638 284 311 124 12 chr4 7071123 7071292 -148558828 - MER53 DNA hAT -4 189 2 9 638 268 318 105 0 chr4 7071995 7072107 -148558013 - B1F SINE Alu -16 133 6 9 638 207 0 0 0 chr4 7073064 7073087 -148557033 + (A)n Simple_repeat Simple_repeat 1 23 0 9 638 549 0 0 0 chr4 7073539 7073600 -148556520 + (TC)n Simple_repeat Simple_repeat 1 61 0 9 638 426 53 0 0 chr4 7074522 7074579 -148555541 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 638 221 238 12 48 chr4 7075072 7075156 -148554964 + T-rich Low_complexity Low_complexity 3 83 0 9 638 1156 216 25 21 chr4 7076306 7076632 -148553488 + Lx7 LINE L1 7370 7696 0 9 638 426 339 71 76 chr4 7076637 7076766 -148553354 + L1M2 LINE L1 4778 4887 -1256 1 638 903 243 9 42 chr4 7076766 7076981 -148553139 - B3 SINE B2 -6 210 3 1 638 426 339 71 76 chr4 7076981 7077231 -148552889 + L1M2 LINE L1 4888 5155 -988 1 639 201 278 0 18 chr4 7078138 7078193 -148551927 + CT-rich Low_complexity Low_complexity 1 54 0 1 639 285 208 18 0 chr4 7078193 7078258 -148551862 - B1F SINE Alu -1 148 54 1 639 252 335 53 74 chr4 7078336 7078526 -148551594 - MLT1G1 LTR MaLR -380 199 14 1 639 23 0 0 0 chr4 7078526 7078549 -148551571 + AT_rich Low_complexity Low_complexity 1 23 0 1 639 700 270 60 89 chr4 7079019 7079267 -148550853 + B4A SINE B4 11 251 -41 1 639 866 289 100 21 chr4 7079319 7079658 -148550462 - MER21B LTR ERV1 -487 376 11 1 639 198 0 0 0 chr4 7079770 7079792 -148550328 + (T)n Simple_repeat Simple_repeat 1 22 0 1 639 244 284 79 36 chr4 7080759 7080898 -148549222 + L2 LINE L2 2105 2249 -1170 1 639 560 359 75 21 chr4 7080962 7081295 -148548825 + L2 LINE L2 2412 2762 -657 1 639 307 293 0 9 chr4 7081591 7081668 -148548452 - ID4 SINE ID -54 98 25 1 639 357 344 24 8 chr4 7081636 7081759 -148548361 - ID_B1 SINE B4 -16 208 84 1 639 423 83 0 0 chr4 7081895 7081955 -148548165 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 639 368 267 114 10 chr4 7081973 7082265 -148547855 + L1MC LINE L1 3904 4230 -1916 1 639 278 242 8 0 chr4 7082348 7082472 -148547648 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 639 387 0 0 0 chr4 7082508 7082551 -148547569 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 639 321 244 11 11 chr4 7082950 7083037 -148547083 - L1MEc LINE L1 -2547 3772 3686 1 639 300 303 112 28 chr4 7083237 7083451 -148546669 - L1MD LINE L1 -2932 3214 2983 1 639 2031 188 83 58 chr4 7083469 7083988 -148546132 - Lx5 LINE L1 0 7050 6519 1 639 255 280 76 62 chr4 7084006 7084231 -148545889 - L1MEc LINE L1 -3162 3157 2930 1 639 244 280 0 0 chr4 7084368 7084423 -148545697 + T-rich Low_complexity Low_complexity 21 75 0 1 639 1196 54 0 0 chr4 7084423 7084571 -148545549 - B1_Mus1 SINE Alu 0 148 1 1 639 244 280 0 0 chr4 7084571 7084590 -148545530 + T-rich Low_complexity Low_complexity 2 20 0 1 639 473 0 18 0 chr4 7084898 7084955 -148545165 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 639 552 351 92 36 chr4 7085057 7085468 -148544652 - L1MEc LINE L1 -5698 702 269 1 639 1648 210 90 5 chr4 7085650 7086018 -148544102 + MTD LTR MaLR 3 401 -18 1 639 6751 34 2 17 chr4 7086164 7086999 -148543121 - L1Md_F3 LINE L1 -1 6583 5761 1 639 906 85 0 0 chr4 7087634 7087763 -148542357 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 1 639 38 22 0 0 chr4 7088088 7088133 -148541987 + AT_rich Low_complexity Low_complexity 1 45 0 1 639 409 316 114 50 chr4 7089127 7089407 -148540713 - ORR1E LTR MaLR 0 359 62 1 639 6942 73 25 0 chr4 7089553 7090643 -148539477 + L1_Mus1 LINE L1 5451 6567 0 1 639 342 0 0 0 chr4 7091063 7091101 -148539019 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 639 372 273 20 20 chr4 7091106 7091207 -148538913 - B3A SINE B2 -22 176 76 1 639 2373 115 109 34 chr4 7092506 7092948 -148537172 + IAPLTR2_Mm LTR ERVK 1 475 0 1 639 435 100 146 29 chr4 7092949 7093052 -148537068 + IAPEz-int LTR ERVK 9 123 -6358 1 639 229 267 0 0 chr4 7093052 7093097 -148537023 + RLTR27 LTR ERVK 231 275 -34 1 639 3526 56 26 18 chr4 7093097 7093588 -148536532 + IAPEz-int LTR ERVK 168 662 -5819 1 639 2074 75 0 0 chr4 7093588 7093866 -148536254 + IAPEz-int LTR ERVK 1359 1636 -4845 1 639 2323 52 0 29 chr4 7093865 7094181 -148535939 + IAPEz-int LTR ERVK 5736 6042 -439 1 639 2951 23 2 179 chr4 7094181 7094655 -148535465 - RLTR10 LTR ERVK 0 390 1 1 639 8262 21 1 1 chr4 7094657 7095652 -148534468 - RLTR10-int LTR ERVK -3 1984 990 1 639 340 238 54 31 chr4 7095734 7095864 -148534256 - RLTR10-int LTR ERVK -5987 1594 1462 1 639 3823 53 7 7 chr4 7095928 7096851 -148533269 - RLTR10-int LTR ERVK -989 998 3 1 639 2728 21 2 253 chr4 7096853 7097374 -148532746 - RLTR10 LTR ERVK 0 390 1 1 639 306 313 88 44 chr4 7098308 7098445 -148531675 + B4A SINE B4 2 144 -148 1 639 348 24 0 0 chr4 7098581 7098622 -148531498 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 639 309 309 36 0 chr4 7100166 7100250 -148529870 - LFSINE_Vert SINE SINE -147 312 226 1 639 21 36 0 0 chr4 7100693 7100721 -148529399 + AT_rich Low_complexity Low_complexity 1 28 0 1 639 414 0 0 0 chr4 7101313 7101359 -148528761 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 1 639 317 257 27 48 chr4 7102059 7102206 -148527914 - L1M2 LINE L1 -1315 4828 4685 1 639 340 233 23 23 chr4 7104309 7104397 -148525723 + PB1D10 SINE Alu 24 111 -6 1 639 244 250 0 0 chr4 7104854 7104902 -148525218 - ID4_ SINE ID -30 53 6 1 639 338 370 62 8 chr4 7105029 7105157 -148524963 + RSINE1 SINE B4 2 136 -29 1 639 632 303 98 54 chr4 7105739 7105968 -148524152 - MER2 DNA MER2_type -14 331 82 1 639 384 59 0 0 chr4 7105968 7106019 -148524101 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1 639 1007 134 0 7 chr4 7106021 7106164 -148523956 - B1_Mus1 SINE Alu -6 142 1 1 639 632 303 98 54 chr4 7106164 7106248 -148523872 - MER2 DNA MER2_type -264 81 1 1 639 227 387 78 31 chr4 7106855 7107111 -148523009 - ORR1E LTR MaLR -51 308 41 1 639 233 300 14 14 chr4 7107218 7107289 -148522831 - ID4_ SINE ID -1 82 12 1 639 272 323 110 17 chr4 7107315 7107671 -148522449 - L1MC3 LINE L1 -18 7767 7379 1 639 225 0 0 0 chr4 7107725 7107750 -148522370 + (T)n Simple_repeat Simple_repeat 1 25 0 1 639 622 210 79 7 chr4 7107750 7107889 -148522231 - B1_Mur1 SINE Alu 0 149 1 1 639 1642 278 104 37 chr4 7108391 7109225 -148520895 - L1MC3 LINE L1 -494 7291 6402 1 639 24 53 0 0 chr4 7110197 7110235 -148519885 + AT_rich Low_complexity Low_complexity 1 38 0 1 639 1224 22 0 53 chr4 7110954 7111144 -148518976 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 639 4344 70 19 0 chr4 7111459 7112048 -148518072 + Lx LINE L1 5680 6279 -375 1 639 2941 195 16 42 chr4 7112049 7112756 -148517364 - Lx5 LINE L1 -622 6428 5741 1 639 264 302 186 77 chr4 7113552 7113918 -148516202 + MLT1A1 LTR MaLR 1 406 -2 1 639 253 322 115 34 chr4 7116733 7116881 -148513239 + MIRb SINE MIR 94 253 -15 1 639 236 297 0 0 chr4 7117037 7117101 -148513019 + T-rich Low_complexity Low_complexity 1 64 0 1 639 659 232 14 21 chr4 7117102 7117243 -148512877 - B1_Mur3 SINE Alu 0 149 10 1 639 259 296 56 100 chr4 7117164 7117254 -148512866 - B4 SINE B4 -126 166 81 1 639 415 203 0 0 chr4 7119946 7120020 -148510100 - B3 SINE B2 -130 86 13 1 639 258 339 95 18 chr4 7120782 7121089 -148509031 + FordPrefect DNA Tip100 950 1339 -344 1 639 482 31 16 0 chr4 7121688 7121752 -148508368 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 639 449 236 11 0 chr4 7122676 7122765 -148507355 + ID_B1 SINE B4 108 197 -27 1 639 311 272 33 66 chr4 7123255 7123377 -148506743 - PB1D9 SINE Alu 0 120 3 1 639 251 320 26 0 chr4 7123674 7123752 -148506368 - ID4 SINE ID -1 82 3 1 639 214 302 67 34 chr4 7123963 7124052 -148506068 - MIR SINE MIR -8 254 163 1 639 232 241 33 33 chr4 7124518 7124578 -148505542 - ID4_ SINE ID -6 77 18 1 639 437 274 40 16 chr4 7124603 7124729 -148505391 - B1F SINE Alu 0 149 21 1 639 389 301 7 40 chr4 7124729 7124752 -148505368 - ID_B1 SINE B4 0 224 81 1 639 360 0 0 0 chr4 7124942 7124982 -148505138 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 639 280 340 113 0 chr4 7125231 7125381 -148504739 - MLT1B LTR MaLR 0 390 224 1 639 612 0 0 0 chr4 7126517 7126585 -148503535 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 639 24 0 0 0 chr4 7127038 7127062 -148503058 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 22 35 0 0 chr4 7129043 7129072 -148501048 + AT_rich Low_complexity Low_complexity 1 29 0 1 639 21 0 0 0 chr4 7129674 7129695 -148500425 + AT_rich Low_complexity Low_complexity 1 21 0 1 639 758 53 0 0 chr4 7129919 7130013 -148500107 - B1_Mm SINE Alu 0 147 54 1 639 253 281 10 0 chr4 7130146 7130242 -148499878 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 639 784 175 49 0 chr4 7132146 7132289 -148497831 - B1_Mur4 SINE Alu 0 150 1 1 639 872 328 19 4 chr4 7132289 7132555 -148497565 - B4A SINE B4 -22 270 1 1 639 396 299 31 0 chr4 7132738 7132835 -148497285 - B1F1 SINE Alu -47 102 3 1 639 450 0 0 0 chr4 7132850 7132900 -148497220 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 639 233 274 55 0 chr4 7135043 7135116 -148495004 + MTEa LTR MaLR 295 371 -8 1 639 306 215 0 0 chr4 7135865 7135944 -148494176 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 639 273 198 47 9 chr4 7136006 7136113 -148494007 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 639 419 268 0 20 chr4 7137084 7137183 -148492937 + PB1D10 SINE Alu 12 108 -9 1 639 329 309 69 38 chr4 7137197 7137328 -148492792 + RSINE1 SINE B4 11 145 -20 1 639 26 30 0 0 chr4 7137353 7137386 -148492734 + AT_rich Low_complexity Low_complexity 1 33 0 1 639 239 141 12 37 chr4 7137386 7137467 -148492653 + (TAA)n Simple_repeat Simple_repeat 2 80 0 1 639 433 155 58 23 chr4 7137487 7137573 -148492547 - RMER15 LTR ERVL -460 115 27 1 639 231 161 61 152 chr4 7137619 7137685 -148492435 - RMER15 LTR ERVL -515 60 1 1 639 1226 270 27 3 chr4 7138114 7138411 -148491709 + MTEa LTR MaLR 69 372 -7 1 639 182 62 31 0 chr4 7138430 7138462 -148491658 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 639 215 308 62 25 chr4 7139885 7139965 -148490155 - ID4_ SINE ID 0 83 1 1 639 378 304 16 16 chr4 7140058 7140242 -148489878 - L1MD3 LINE L1 -439 7556 7282 1 639 302 53 0 0 chr4 7140384 7140422 -148489698 - tRNA-Met_ tRNA tRNA -38 38 1 1 639 253 313 30 15 chr4 7142003 7142136 -148487984 - B1F1 SINE Alu -10 139 5 1 639 320 137 27 0 chr4 7145102 7145175 -148484945 + (TCTCTG)n Simple_repeat Simple_repeat 1 75 0 1 639 225 246 16 0 chr4 7145435 7145496 -148484624 + (TCTG)n Simple_repeat Simple_repeat 4 65 0 1 639 333 0 0 0 chr4 7146138 7146175 -148483945 + (T)n Simple_repeat Simple_repeat 1 37 0 1 639 1179 41 0 27 chr4 7146175 7146325 -148483795 - B1_Mm SINE Alu 0 147 2 1 639 251 338 0 0 chr4 7146671 7146742 -148483378 - ID4 SINE ID -11 72 2 1 639 2630 31 0 9 chr4 7147057 7147379 -148482741 - L1Md_F3 LINE L1 -16 6568 6250 2 639 21 0 0 0 chr4 7149115 7149136 -148480984 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 269 317 72 16 chr4 7149452 7149577 -148480543 + L2a LINE L2 2935 3066 -353 2 639 190 378 38 38 chr4 7149586 7149743 -148480377 + L2a LINE L2 3270 3426 0 2 639 695 155 0 6 chr4 7150126 7150301 -148479819 + (CAGAC)n Simple_repeat Simple_repeat 5 178 0 2 639 219 317 0 0 chr4 7150302 7150362 -148479758 + (CAGCC)n Simple_repeat Simple_repeat 5 64 0 2 639 25 51 0 0 chr4 7150740 7150779 -148479341 + AT_rich Low_complexity Low_complexity 1 39 0 2 639 427 346 132 32 chr4 7152148 7152399 -148477721 - B4A SINE B4 -6 286 11 2 639 1689 161 146 0 chr4 7152512 7152847 -148477273 - ORR1C2 LTR MaLR 0 384 1 2 639 214 242 167 0 chr4 7152853 7152919 -148477201 + B1F1 SINE Alu 21 97 -52 2 639 482 0 17 0 chr4 7152945 7153003 -148477117 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 639 598 257 21 0 chr4 7155042 7155182 -148474938 - B1_Mur1 SINE Alu -6 143 1 2 639 218 186 86 0 chr4 7155790 7155860 -148474260 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2 639 614 150 8 0 chr4 7155861 7155981 -148474139 + GA-rich Low_complexity Low_complexity 3 123 0 2 639 180 278 95 53 chr4 7156765 7156860 -148473260 - L2c LINE L2 -148 3239 3141 2 639 954 201 29 95 chr4 7157419 7157661 -148472459 - MTC LTR MaLR 0 421 196 2 639 8530 81 25 3 chr4 7157674 7158911 -148471209 - Lx3_Mus LINE L1 0 7009 5746 2 639 404 214 0 11 chr4 7158911 7159015 -148471105 - MTC LTR MaLR -171 225 130 2 639 2509 223 65 17 chr4 7159015 7159612 -148470508 + RMER20B LTR ERVK 1 626 -1 2 639 673 191 87 14 chr4 7159612 7159727 -148470393 - MTC LTR MaLR -296 125 1 2 639 1163 231 125 44 chr4 7161219 7161621 -148468499 - RMER1C Other Other 0 1342 908 2 639 398 69 0 17 chr4 7161621 7161680 -148468440 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 2 639 932 160 0 11 chr4 7161689 7161866 -148468254 + A-rich Low_complexity Low_complexity 1 175 0 2 639 366 309 16 0 chr4 7161867 7161993 -148468127 - RMER1C Other Other -442 900 773 2 639 502 247 25 104 chr4 7162530 7162693 -148467427 - RSINE1 SINE B4 0 165 16 2 639 181 335 117 24 chr4 7162703 7162908 -148467212 - MIR SINE MIR -15 247 24 2 639 517 311 7 45 chr4 7163458 7163613 -148466507 + RSINE1 SINE B4 15 163 -2 2 639 426 266 0 0 chr4 7163670 7163809 -148466311 + (TA)n Simple_repeat Simple_repeat 2 140 0 2 639 556 190 32 0 chr4 7163823 7163981 -148466139 + (TA)n Simple_repeat Simple_repeat 1 163 0 2 639 184 310 0 49 chr4 7164336 7164397 -148465723 + L2 LINE L2 87 144 -3275 2 639 2221 153 5 46 chr4 7165851 7166242 -148463878 - ORR1C1 LTR MaLR -3 375 1 2 639 567 319 85 20 chr4 7166963 7167459 -148462661 + L1MB4 LINE L1 5360 5887 -293 2 639 226 259 174 22 chr4 7167569 7167707 -148462413 + L1MB4 LINE L1 6005 6163 -11 2 639 1101 74 0 0 chr4 7168769 7168904 -148461216 + B1_Mus1 SINE Alu 1 135 -13 2 639 183 42 0 0 chr4 7168904 7168928 -148461192 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 639 1925 62 47 0 chr4 7169030 7169288 -148460832 + L1_Mus1 LINE L1 6297 6566 -1 2 639 369 319 18 0 chr4 7169361 7169474 -148460646 + B4A SINE B4 3 117 -175 2 639 345 109 0 0 chr4 7169659 7169723 -148460397 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 639 502 335 15 29 chr4 7169767 7169973 -148460147 - L4 LINE RTE -1609 420 218 2 639 7290 65 3 2 chr4 7170359 7171338 -148458782 + L1_Mus2 LINE L1 5587 6566 0 2 639 253 143 20 0 chr4 7171655 7171704 -148458416 + RMER30 DNA MER1_type 106 155 -47 2 639 1034 285 195 66 chr4 7171707 7172041 -148458079 + MTD LTR MaLR 1 377 -23 2 639 268 366 30 0 chr4 7172205 7172336 -148457784 - Tigger5 DNA MER2_type -2191 215 81 2 639 544 230 26 106 chr4 7172353 7172504 -148457616 - B4 SINE B4 0 292 154 2 639 186 192 0 0 chr4 7174386 7174438 -148455682 + A-rich Low_complexity Low_complexity 4 55 0 2 639 369 0 0 0 chr4 7174973 7175014 -148455106 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 639 1081 97 0 0 chr4 7176008 7176153 -148453967 - B1_Mus2 SINE Alu -2 145 1 2 639 956 189 34 6 chr4 7176162 7176338 -148453782 - ORR1C2 LTR MaLR -2 382 202 2 639 788 283 110 168 chr4 7176351 7176840 -148453280 - MT2A LTR ERVL -72 461 1 2 639 487 174 70 0 chr4 7176840 7176955 -148453165 - MERVL_2A-int LTR ERVL 0 5761 5639 2 639 610 157 19 0 chr4 7176961 7177069 -148453051 - MERVL_2A-int LTR ERVL -5251 510 401 2 639 490 164 173 0 chr4 7177067 7177171 -148452949 - MERVL_2A-int LTR ERVL -5581 180 59 2 639 741 244 106 125 chr4 7177210 7177626 -148452494 - MT2A LTR ERVL -61 540 1 2 639 258 348 87 0 chr4 7177668 7177737 -148452383 + PB1D10 SINE Alu 15 89 -60 2 639 599 116 37 43 chr4 7177775 7177937 -148452183 + GA-rich Low_complexity Low_complexity 1 161 0 2 639 198 171 0 0 chr4 7179574 7179615 -148450505 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2 639 1654 194 85 12 chr4 7179680 7180020 -148450100 - ORR1B2 LTR MaLR 0 367 3 2 639 440 211 128 0 chr4 7180438 7180594 -148449526 - L1MA6 LINE L1 -111 6189 6014 2 639 683 24 0 12 chr4 7180604 7180690 -148449430 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 2 639 260 304 32 0 chr4 7181503 7181594 -148448526 - MIR SINE MIR -7 261 165 2 639 699 224 28 0 chr4 7181634 7181777 -148448343 + B1F SINE Alu 2 148 -1 2 639 190 56 27 27 chr4 7181807 7181844 -148448276 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 639 637 314 12 27 chr4 7182053 7182312 -148447808 - Lx9 LINE L1 -338 7306 7052 2 639 653 242 12 0 chr4 7182324 7182485 -148447635 + Lx9 LINE L1 7314 7476 -168 2 639 204 97 0 0 chr4 7182497 7182528 -148447592 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 639 22 80 0 0 chr4 7182585 7182635 -148447485 + AT_rich Low_complexity Low_complexity 1 50 0 2 639 304 245 61 0 chr4 7183851 7183949 -148446171 - L1MC5 LINE L1 -583 7378 7275 2 639 220 325 13 0 chr4 7184419 7184496 -148445624 + ID4 SINE ID 6 83 0 2 639 846 319 52 0 chr4 7186252 7186522 -148443598 + B4 SINE B4 4 287 -5 2 639 191 228 8 0 chr4 7186553 7186676 -148443444 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 639 588 91 0 0 chr4 7186696 7186784 -148443336 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 639 645 69 0 0 chr4 7186996 7187083 -148443037 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 639 696 327 115 16 chr4 7187189 7187571 -148442549 - MT2A LTR ERVL -109 424 5 2 639 283 42 0 41 chr4 7188028 7188077 -148442043 + L1Md_F2 LINE L1 6524 6570 -12 2 639 4080 71 24 61 chr4 7188380 7189057 -148441063 - MusHAL1 LINE L1 -5 2707 2056 2 639 43 0 0 0 chr4 7189452 7189495 -148440625 + AT_rich Low_complexity Low_complexity 1 43 0 2 639 1074 156 52 0 chr4 7189710 7189941 -148440179 - Lx3_Mus LINE L1 -790 6219 5977 2 639 5513 81 32 0 chr4 7189942 7190686 -148439434 + Lx3_Mus LINE L1 6242 7009 0 2 639 214 164 24 131 chr4 7191584 7191668 -148438452 - L2c LINE L2 -131 3256 3182 2 639 419 336 111 22 chr4 7192239 7192464 -148437656 + L1M5 LINE L1 2513 2757 -3389 2 639 2694 60 3 11 chr4 7192593 7192815 -148437305 + L1_Mus2 LINE L1 6217 6437 -129 2 639 2201 138 71 8 chr4 7192815 7193194 -148436926 + RLTR9D LTR ERVK 1 403 0 2 639 2694 60 3 11 chr4 7193194 7193324 -148436796 + L1_Mus2 LINE L1 6438 6566 0 2 639 184 54 26 51 chr4 7193414 7193453 -148436667 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 2 639 209 161 0 0 chr4 7193626 7193657 -148436463 + polypurine Low_complexity Low_complexity 2 32 0 2 639 185 332 65 78 chr4 7194657 7194951 -148435169 - L3 LINE CR1 -630 3859 3570 2 639 22 35 0 0 chr4 7196003 7196032 -148434088 + AT_rich Low_complexity Low_complexity 1 29 0 2 639 269 321 26 18 chr4 7196810 7196924 -148433196 - MIR3 SINE MIR -5 203 89 2 639 7607 50 6 0 chr4 7199304 7200284 -148429836 - L1Md_F2 LINE L1 -10 6572 5587 2 639 39028 11 4 0 chr4 7200311 7206807 -148423313 - L1Md_A LINE L1 0 6582 54 2 79 31312 59 18 1 chr4 7206808 7211418 -148418702 - L1Md_Gf LINE L1 -306 5580 794 2 640 431 202 0 0 chr4 7211418 7211512 -148418608 - L1Md_Gf LINE L1 -6191 428 335 2 640 25 0 0 0 chr4 7211630 7211655 -148418465 + AT_rich Low_complexity Low_complexity 1 25 0 2 640 396 0 0 0 chr4 7211781 7211825 -148418295 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 640 344 204 0 31 chr4 7212047 7212143 -148417977 + CT-rich Low_complexity Low_complexity 2 94 0 2 640 258 241 19 0 chr4 7212233 7212287 -148417833 - ID4_ SINE ID -14 69 15 2 640 728 297 16 8 chr4 7212390 7212638 -148417482 + Lx9 LINE L1 7222 7471 -173 2 640 235 280 250 0 chr4 7212641 7212809 -148417311 - RMER12 LTR ERVK -364 958 749 2 640 467 320 78 17 chr4 7212933 7213165 -148416955 - L1ME1 LINE L1 -126 6053 5808 2 640 333 0 0 0 chr4 7213279 7213316 -148416804 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 640 328 254 104 9 chr4 7213401 7213516 -148416604 - L1ME1 LINE L1 -991 5155 5030 2 640 34 0 0 0 chr4 7213934 7213968 -148416152 + AT_rich Low_complexity Low_complexity 1 34 0 2 640 516 353 86 53 chr4 7214056 7214567 -148415553 - L1ME1 LINE L1 -1948 4198 3671 2 640 24 0 0 0 chr4 7216012 7216036 -148414084 + AT_rich Low_complexity Low_complexity 1 24 0 2 640 234 0 0 0 chr4 7219315 7219341 -148410779 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 640 185 294 179 38 chr4 7219694 7219800 -148410320 - MIRm SINE MIR 0 276 156 2 640 208 148 56 0 chr4 7221051 7221105 -148409015 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 2 640 9211 88 32 10 chr4 7221117 7222852 -148407268 - Lx3_Mus LINE L1 -19 6990 5210 2 640 880 251 72 19 chr4 7223030 7223294 -148406826 + Lx7 LINE L1 27 304 -7424 2 640 3886 198 42 6 chr4 7223296 7223534 -148406586 + Lx7 LINE L1 4991 5238 -642 2 640 2002 87 58 17 chr4 7223534 7223827 -148406293 + L1_Mus1 LINE L1 6263 6567 0 2 640 3886 208 46 9 chr4 7223827 7224828 -148405292 + Lx7 LINE L1 5239 6290 -1406 2 640 2536 122 38 42 chr4 7224830 7225307 -148404813 - IAPLTR2_Mm LTR ERVK 0 475 1 2 640 26853 8 1 0 chr4 7225307 7228262 -148401858 - IAPEz-int LTR ERVK 0 6481 3525 2 640 918 81 24 0 chr4 7228262 7228385 -148401735 - IAPEz-int LTR ERVK -2770 4910 4785 2 640 1800 123 4 4 chr4 7228382 7228644 -148401476 - IAPEz-int LTR ERVK -5183 2497 2236 2 640 442 66 0 32 chr4 7228633 7228696 -148401424 - IAPEz-int LTR ERVK -5062 1419 1359 2 640 3344 60 4 71 chr4 7228696 7229479 -148400641 - IAPEz-int LTR ERVK -5819 662 8 2 640 2464 118 38 48 chr4 7229479 7229959 -148400161 - IAPLTR2_Mm LTR ERVK 0 475 1 2 640 1281 195 53 0 chr4 7229959 7230205 -148399915 + Lx7 LINE L1 6276 6534 -926 2 640 756 292 151 9 chr4 7230215 7230553 -148399567 - MER34 LTR ERV1 -148 394 9 2 640 850 173 9 4 chr4 7231094 7231532 -148398588 + CT-rich Low_complexity Low_complexity 1 439 0 2 640 240 284 45 0 chr4 7231536 7231624 -148398496 - Lx5 LINE L1 -35 7015 6924 2 640 777 204 0 13 chr4 7231638 7231787 -148398333 + L1_Mur2 LINE L1 4919 5065 -812 3 640 396 365 54 55 chr4 7232224 7232703 -148397417 + MLT1F2 LTR MaLR 82 611 -13 3 640 23 0 0 0 chr4 7232999 7233022 -148397098 + AT_rich Low_complexity Low_complexity 1 23 0 3 640 396 0 0 0 chr4 7234837 7234881 -148395239 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 640 615 104 26 0 chr4 7234881 7234996 -148395124 + (GA)n Simple_repeat Simple_repeat 1 118 0 3 640 395 216 356 7 chr4 7235090 7235225 -148394895 - B3 SINE B2 0 216 35 3 640 1569 169 3 7 chr4 7235226 7235512 -148394608 + Lx2A LINE L1 6724 7008 0 3 640 25 51 0 0 chr4 7235524 7235563 -148394557 + AT_rich Low_complexity Low_complexity 1 39 0 3 640 230 303 44 114 chr4 7235596 7235823 -148394297 + Lx8 LINE L1 7260 7470 -3 3 640 221 105 45 34 chr4 7235911 7236000 -148394120 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 640 213 197 0 0 chr4 7236044 7236110 -148394010 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 640 1019 212 202 29 chr4 7236354 7236670 -148393450 + ORR1D1 LTR MaLR 4 374 0 3 640 576 24 24 12 chr4 7237120 7237203 -148392917 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 3 640 383 301 0 38 chr4 7237838 7238021 -148392099 + (TATG)n Simple_repeat Simple_repeat 2 177 0 3 640 2281 50 0 0 chr4 7238700 7238983 -148391137 - L1Md_A LINE L1 0 6582 6300 3 640 873 262 5 9 chr4 7241956 7242172 -148387948 + B3 SINE B2 1 215 -1 3 640 1567 247 136 55 chr4 7242215 7242849 -148387271 - Lx9 LINE L1 -15 7629 6945 3 640 1210 276 101 0 chr4 7242845 7243200 -148386920 - Lx9 LINE L1 -816 6828 6438 3 640 977 311 45 3 chr4 7243212 7243654 -148386466 - RMER1B Other Other -496 846 65 3 640 4320 237 99 34 chr4 7243974 7245261 -148384859 - Lx9 LINE L1 -1592 6052 4622 3 640 180 0 0 0 chr4 7245261 7245281 -148384839 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 640 4320 230 111 31 chr4 7245281 7245682 -148384438 - Lx9 LINE L1 -1226 4621 4220 3 640 1215 245 45 46 chr4 7245685 7246451 -148383669 - Lx9 LINE L1 -2247 3600 2801 3 640 588 228 16 31 chr4 7246807 7246934 -148383186 - RMER20B LTR ERVK -502 125 1 3 640 2912 182 66 10 chr4 7246974 7247564 -148382556 + Lx4A LINE L1 6434 7056 -2 3 640 22 0 0 0 chr4 7247564 7247586 -148382534 + AT_rich Low_complexity Low_complexity 1 22 0 3 640 1893 256 60 33 chr4 7247586 7248365 -148381755 - Lx9 LINE L1 -3101 2746 1947 3 640 25 0 0 0 chr4 7248382 7248407 -148381713 + AT_rich Low_complexity Low_complexity 1 25 0 3 640 2556 53 20 110 chr4 7249876 7250277 -148379843 - RLTR10B2 LTR ERVK 0 365 1 3 640 554 262 70 23 chr4 7250320 7250535 -148379585 + L1P5 LINE L1 5387 5611 -545 3 640 713 160 112 29 chr4 7250543 7250749 -148379371 + Lx9 LINE L1 7416 7638 -6 3 640 3023 116 2 2 chr4 7250770 7251211 -148378909 + Lx3B LINE L1 6370 6810 -163 3 640 2228 99 198 6 chr4 7251211 7251575 -148378545 + RLTR10C LTR ERVK 1 434 -2 3 640 620 89 11 0 chr4 7251576 7251666 -148378454 + MMERVK10C-int LTR ERVK 3 93 -7488 3 640 252 259 0 18 chr4 7251666 7251721 -148378399 + RLTR27 LTR ERVK 222 275 -34 3 640 4713 100 7 4 chr4 7251721 7252396 -148377724 + MMERVK10C-int LTR ERVK 225 901 -6680 3 640 473 142 28 9 chr4 7252441 7252548 -148377572 + MMERVK10C-int LTR ERVK 844 952 -6629 3 640 1593 155 104 32 chr4 7252640 7253067 -148377053 + RMER16-int LTR ERVK 312 819 -4587 3 640 19562 82 3 3 chr4 7253451 7256338 -148373782 + MMERVK10C-int LTR ERVK 4768 7680 0 3 640 2236 121 185 5 chr4 7256338 7256705 -148373415 + RLTR10C LTR ERVK 1 433 -3 3 640 719 191 6 31 chr4 7256706 7256868 -148373252 + Lx3B LINE L1 6806 6963 -10 3 640 749 41 0 10 chr4 7256894 7256992 -148373128 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 3 640 528 296 40 4 chr4 7256997 7257280 -148372840 + L1MA5 LINE L1 5537 5830 -17 3 640 417 39 0 0 chr4 7257312 7257363 -148372757 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 640 353 136 0 15 chr4 7257363 7257430 -148372690 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 640 2952 191 113 14 chr4 7257788 7258669 -148371451 + Lx7 LINE L1 549 1517 -4363 3 640 722 230 68 0 chr4 7258669 7258817 -148371303 + L1_Mur3 LINE L1 5454 5611 -269 3 640 2299 149 15 51 chr4 7258817 7259226 -148370894 + ORR1B1 LTR MaLR 1 394 0 3 640 913 233 141 8 chr4 7259336 7259578 -148370542 + L1_Mur3 LINE L1 11 284 -7428 3 640 4726 211 56 57 chr4 7259586 7260928 -148369192 + Lx7 LINE L1 4988 6338 -1358 3 640 207 0 0 0 chr4 7260928 7260951 -148369169 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 640 4726 250 102 16 chr4 7260951 7261574 -148368546 + Lx7 LINE L1 6339 7003 -693 3 640 456 35 0 0 chr4 7261574 7261632 -148368488 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 640 414 0 0 0 chr4 7261632 7261677 -148368443 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 640 4726 250 102 16 chr4 7261677 7261762 -148368358 + Lx7 LINE L1 7004 7113 -583 3 640 1051 186 106 17 chr4 7261754 7261866 -148368254 + Lx7 LINE L1 7368 7497 -199 3 640 189 0 0 0 chr4 7261866 7261887 -148368233 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 640 1051 186 106 17 chr4 7261887 7262075 -148368045 + Lx7 LINE L1 7498 7695 -1 3 640 429 254 6 28 chr4 7262172 7262354 -148367766 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 640 1797 297 114 26 chr4 7263929 7265187 -148364933 + L1M4c LINE L1 17 1385 -4999 3 640 361 321 209 18 chr4 7265229 7265559 -148364561 + L1M4c LINE L1 4157 4549 -1830 3 640 255 311 109 33 chr4 7265659 7266201 -148363919 - L1M4 LINE L1 -3104 3042 2460 3 640 236 257 14 0 chr4 7266282 7266352 -148363768 - L1M5 LINE L1 -358 5821 5751 3 640 1006 306 149 14 chr4 7266552 7267703 -148362417 - L1M2 LINE L1 -126 5754 4432 3 640 449 209 0 1 chr4 7267726 7267810 -148362310 + B1_Mur1 SINE Alu 53 134 -13 3 640 704 12 12 0 chr4 7267810 7267895 -148362225 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 640 315 274 0 40 chr4 7267895 7267909 -148362211 + B1_Mus2 SINE Alu 135 147 0 3 640 21 0 0 0 chr4 7268597 7268618 -148361502 + AT_rich Low_complexity Low_complexity 1 21 0 3 640 552 77 0 0 chr4 7270152 7270230 -148359890 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 640 247 174 28 28 chr4 7271466 7271537 -148358583 + CT-rich Low_complexity Low_complexity 2 72 0 3 640 335 303 9 0 chr4 7271995 7272104 -148358016 + PB1D7 SINE Alu 1 110 -10 3 640 606 30 49 10 chr4 7272468 7272570 -148357550 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 640 24 0 0 0 chr4 7272573 7272597 -148357523 + AT_rich Low_complexity Low_complexity 1 24 0 3 640 2466 114 8 0 chr4 7272597 7272957 -148357163 - Lx2B LINE L1 -431 6569 6207 3 640 1091 82 0 0 chr4 7273351 7273498 -148356622 + B1_Mus2 SINE Alu 1 147 0 3 640 243 0 0 0 chr4 7274208 7274235 -148355885 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 640 236 53 0 26 chr4 7274474 7274513 -148355607 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 640 21 0 0 0 chr4 7276324 7276345 -148353775 + AT_rich Low_complexity Low_complexity 1 21 0 3 640 38407 54 5 9 chr4 7276347 7282801 -148347319 - L1Md_T LINE L1 0 6582 151 3 640 2576 267 53 31 chr4 7283269 7284422 -148345698 + L1MC2 LINE L1 5145 6333 -11 3 640 22 0 0 0 chr4 7284644 7284666 -148345454 + AT_rich Low_complexity Low_complexity 1 22 0 3 640 2435 304 36 57 chr4 7284957 7286020 -148344100 + Lx7 LINE L1 6297 7348 -125 3 640 203 0 0 36 chr4 7286020 7286048 -148344072 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 640 1535 348 45 53 chr4 7286048 7286139 -148343981 + Lx7 LINE L1 7349 7442 -31 3 640 44 56 0 0 chr4 7286150 7286222 -148343898 + AT_rich Low_complexity Low_complexity 1 72 0 3 640 306 0 0 0 chr4 7287188 7287222 -148342898 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 640 208 98 24 24 chr4 7287341 7287383 -148342737 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 3 640 393 22 0 0 chr4 7287383 7287429 -148342691 + (TGG)n Simple_repeat Simple_repeat 1 46 0 3 640 186 103 0 0 chr4 7287593 7287622 -148342498 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 3 640 2009 196 21 8 chr4 7288217 7288603 -148341517 + MTC LTR MaLR 3 393 -28 3 640 474 75 0 0 chr4 7288968 7289035 -148341085 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 640 839 37 9 0 chr4 7289038 7289145 -148340975 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 3 640 351 309 62 41 chr4 7289865 7290010 -148340110 + B1F SINE Alu 2 149 0 3 640 505 320 113 58 chr4 7290026 7290301 -148339819 + B4A SINE B4 1 290 -2 3 640 285 29 0 0 chr4 7290369 7290403 -148339717 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 640 320 68 23 0 chr4 7290446 7290490 -148339630 - HAL1-3A_ME LINE L1 -839 2019 1975 3 640 573 252 21 44 chr4 7290780 7290971 -148339149 - ORR1B2 LTR MaLR -164 220 19 3 640 488 302 41 0 chr4 7291306 7291475 -148338645 - Arthur1C DNA Tip100 -87 276 101 3 640 2161 195 21 109 chr4 7292065 7292645 -148337475 - RLTR24 LTR ERV1 0 529 1 3 640 21 36 0 0 chr4 7292949 7292977 -148337143 + AT_rich Low_complexity Low_complexity 1 28 0 3 640 33344 76 7 7 chr4 7293508 7295100 -148335020 + L1Md_F2 LINE L1 381 1976 -3907 3 640 257 0 30 0 chr4 7295100 7295133 -148334987 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 640 33344 80 13 3 chr4 7295133 7295604 -148334516 + L1Md_F2 LINE L1 1977 2444 -3439 3 640 1701 147 93 113 chr4 7295604 7296089 -148334031 - IAPLTR2_Mm LTR ERVK 0 475 1 3 640 33344 76 11 3 chr4 7296089 7299676 -148330444 + L1Md_F2 LINE L1 2445 6068 -514 3 640 311 90 45 0 chr4 7299677 7299744 -148330376 + L1Md_F2 LINE L1 6511 6580 -2 3 640 453 36 0 0 chr4 7299768 7299823 -148330297 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 640 546 16 0 0 chr4 7299846 7299909 -148330211 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 640 670 291 114 12 chr4 7300134 7300388 -148329732 + MER2 DNA MER2_type 65 344 -1 3 640 804 207 74 26 chr4 7301331 7301520 -148328600 + B3 SINE B2 13 210 -6 3 640 654 317 66 79 chr4 7301579 7301884 -148328236 - MTEa LTR MaLR -73 306 6 3 640 201 283 0 0 chr4 7302675 7302721 -148327399 + MIR3 SINE MIR 120 165 -43 3 640 41 36 0 0 chr4 7302897 7302952 -148327168 + AT_rich Low_complexity Low_complexity 1 55 0 3 640 783 40 0 0 chr4 7304238 7304338 -148325782 + B1_Mm SINE Alu 48 147 0 3 640 29 47 0 0 chr4 7305009 7305052 -148325068 + AT_rich Low_complexity Low_complexity 1 43 0 3 640 396 167 0 0 chr4 7305216 7305288 -148324832 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 640 468 35 0 0 chr4 7305483 7305541 -148324579 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 640 1277 90 11 0 chr4 7306149 7306326 -148323794 - B2_Mm1t SINE B2 -14 179 1 3 640 3464 155 9 12 chr4 7306959 7307708 -148322412 - Lx5 LINE L1 -1031 6019 5268 3 640 3984 209 47 32 chr4 7307707 7308629 -148321491 + Lx4B LINE L1 6122 7056 -2 3 640 369 0 0 0 chr4 7308696 7308737 -148321383 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 640 216 0 0 0 chr4 7308737 7308760 -148321360 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 640 322 282 72 15 chr4 7309291 7309508 -148320612 - L1M5 LINE L1 -826 5518 5290 4 640 304 302 62 52 chr4 7309549 7309856 -148320264 - L1M5 LINE L1 -841 5305 4996 4 640 1228 256 87 55 chr4 7309877 7310278 -148319842 + MTC LTR MaLR 1 414 -7 4 640 250 288 169 36 chr4 7310426 7310869 -148319251 - L1M5 LINE L1 -1318 4828 4327 4 640 1022 254 28 16 chr4 7311065 7311313 -148318807 - Lx5 LINE L1 -120 6930 6680 4 640 2350 329 70 22 chr4 7312074 7313247 -148316873 - Lx9 LINE L1 -44 7600 6372 4 640 471 302 0 0 chr4 7313501 7313607 -148316513 + RSINE1 SINE B4 16 121 -44 4 640 404 37 0 18 chr4 7313612 7313667 -148316453 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 640 575 14 0 14 chr4 7313684 7313757 -148316363 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 4 640 665 231 0 0 chr4 7315183 7315313 -148314807 - B1_Mus1 SINE Alu -5 143 14 4 640 2747 316 96 30 chr4 7315614 7317231 -148312889 + Lx8 LINE L1 5700 7465 -8 4 640 322 197 13 38 chr4 7317628 7317707 -148312413 - MTD LTR MaLR -13 366 290 4 640 1514 177 48 6 chr4 7318010 7318323 -148311797 + Lx4B LINE L1 6066 6391 -667 4 640 908 218 31 0 chr4 7318326 7318519 -148311601 - MTD LTR MaLR -211 208 10 4 640 426 20 0 0 chr4 7318724 7318775 -148311345 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 4 640 294 322 126 77 chr4 7319067 7319289 -148310831 + B4A SINE B4 60 292 0 4 640 239 317 35 21 chr4 7320658 7320800 -148309320 + L1MA6 LINE L1 6009 6152 -148 4 640 470 181 12 0 chr4 7320978 7321061 -148309059 - Lx8 LINE L1 -343 7130 7047 4 640 29861 117 24 9 chr4 7321742 7327190 -148302930 + L1Md_F2 LINE L1 98 5586 -297 4 640 7207 68 10 23 chr4 7327190 7328196 -148301924 + L1Md_F2 LINE L1 5587 6579 -3 4 640 905 264 47 47 chr4 7328466 7328769 -148301351 + ORR1D2 LTR MaLR 20 369 -1 4 640 258 283 0 0 chr4 7328925 7328985 -148301135 - MIRc SINE MIR -138 130 71 4 640 549 364 22 30 chr4 7329006 7329275 -148300845 - MER2 DNA MER2_type -3 342 76 4 640 2119 314 54 36 chr4 7329578 7330467 -148299653 - Lx9 LINE L1 -207 7437 6533 4 640 963 229 93 4 chr4 7330475 7330755 -148299365 + Lx9 LINE L1 5532 5836 -11 4 640 726 193 0 14 chr4 7330797 7331013 -148299107 + CT-rich Low_complexity Low_complexity 1 212 0 4 640 656 288 11 48 chr4 7331265 7331451 -148298669 + Lx9 LINE L1 6362 6540 -1104 4 640 25 51 0 0 chr4 7331476 7331515 -148298605 + AT_rich Low_complexity Low_complexity 1 39 0 4 640 410 252 134 0 chr4 7331628 7331755 -148298365 - B1_Mur1 SINE Alu -2 147 4 4 640 23 33 0 0 chr4 7331882 7331912 -148298208 + AT_rich Low_complexity Low_complexity 1 30 0 4 640 285 29 0 0 chr4 7332291 7332325 -148297795 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 640 979 138 179 0 chr4 7333160 7333355 -148296765 + IAPEY3_LTR LTR ERVK 1 230 -102 4 640 299 337 0 0 chr4 7333373 7333468 -148296652 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 640 241 183 150 0 chr4 7334278 7334338 -148295782 - U5 snRNA snRNA -38 78 10 4 640 372 43 0 0 chr4 7334702 7334748 -148295372 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 640 394 305 120 90 chr4 7334911 7335178 -148294942 + MLT1F1 LTR MaLR 129 403 -166 4 640 396 0 0 0 chr4 7335228 7335272 -148294848 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 640 1017 59 0 43 chr4 7335272 7335413 -148294707 - B1_Mus2 SINE Alu -12 135 1 4 640 852 293 68 116 chr4 7335883 7336280 -148293840 + RCHARR1 DNA MER1_type 3 380 -594 4 640 527 229 49 8 chr4 7336310 7336433 -148293687 - RSINE1 SINE B4 -36 129 2 4 640 584 202 104 6 chr4 7336433 7336596 -148293524 + RCHARR1 DNA MER1_type 341 519 -455 4 640 360 312 75 19 chr4 7336635 7336795 -148293325 + L1MEf LINE L1 1507 1675 -4567 4 640 2260 70 6 28 chr4 7336998 7337320 -148292800 - L1_Mus2 LINE L1 0 6566 6252 4 640 481 285 86 57 chr4 7337470 7337645 -148292475 + MLT2D LTR ERVL 153 332 -82 4 640 319 312 49 55 chr4 7337768 7337831 -148292289 + L1MEf LINE L1 2053 2112 -4054 4 640 2402 91 27 16 chr4 7337831 7338200 -148291920 + L1Md_F2 LINE L1 6210 6582 0 4 640 319 312 49 55 chr4 7338200 7338319 -148291801 + L1MEf LINE L1 2113 2234 -3932 4 640 284 189 14 0 chr4 7338382 7338456 -148291664 + CT-rich Low_complexity Low_complexity 2 76 0 4 640 249 117 33 16 chr4 7338689 7338750 -148291370 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 4 640 23 33 0 0 chr4 7338812 7338842 -148291278 + AT_rich Low_complexity Low_complexity 1 30 0 4 640 345 307 148 49 chr4 7339113 7339438 -148290682 + L1MEf LINE L1 2917 3273 -2873 4 9 585 150 0 0 chr4 7339948 7340048 -148290072 + (CATATA)n Simple_repeat Simple_repeat 6 105 0 4 641 272 284 27 0 chr4 7340133 7340207 -148289913 - ID4_ SINE ID -3 80 5 4 641 205 182 0 0 chr4 7341893 7341937 -148288183 + A-rich Low_complexity Low_complexity 5 48 0 4 641 440 29 0 92 chr4 7343140 7343216 -148286904 - L1Md_F2 LINE L1 -2 6580 6512 4 641 1370 226 43 45 chr4 7343885 7344084 -148286036 + ORR1D1 LTR MaLR 1 201 -173 4 641 950 119 43 48 chr4 7344084 7344270 -148285850 + B2_Mm2 SINE B2 2 186 -9 4 641 1370 226 43 45 chr4 7344270 7344445 -148285675 + ORR1D1 LTR MaLR 202 374 0 4 641 237 33 0 0 chr4 7344578 7344608 -148285512 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 641 6603 62 2 0 chr4 7345059 7345903 -148284217 - L1_Mus1 LINE L1 -58 5825 4980 4 641 4912 95 44 0 chr4 7345903 7346643 -148283477 + L1_Mus1 LINE L1 5827 6567 0 4 641 183 228 69 17 chr4 7346714 7346772 -148283348 - L2 LINE L2 -1039 2380 2320 4 641 209 313 161 45 chr4 7346785 7347270 -148282850 - L2 LINE L2 -1166 2253 1713 4 641 786 130 8 0 chr4 7347597 7347720 -148282400 - L1_Mus3 LINE L1 -395 6241 6118 4 641 2459 110 21 3 chr4 7347720 7348104 -148282016 + L1_Mus3 LINE L1 6243 6633 -5 4 641 277 291 11 11 chr4 7348927 7349014 -148281106 + (TATG)n Simple_repeat Simple_repeat 2 88 0 4 641 1577 267 47 8 chr4 7349277 7349749 -148280371 - Lx7 LINE L1 -327 7369 6880 4 641 627 14 0 0 chr4 7349804 7349876 -148280244 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 641 573 101 0 0 chr4 7349876 7349975 -148280145 + (GA)n Simple_repeat Simple_repeat 2 100 0 4 641 364 200 13 13 chr4 7350759 7350835 -148279285 - HAL1-3A_ME LINE L1 -807 2051 1976 4 641 422 277 11 0 chr4 7350835 7351122 -148278998 + (TG)n Simple_repeat Simple_repeat 1 290 0 4 641 291 304 0 0 chr4 7351141 7351289 -148278831 + (TG)n Simple_repeat Simple_repeat 1 148 0 4 641 251 263 0 0 chr4 7351303 7351360 -148278760 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 641 231 152 0 0 chr4 7352116 7352162 -148277958 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 641 472 292 7 27 chr4 7352439 7352587 -148277533 - B1F SINE Alu -2 147 3 4 641 396 0 0 0 chr4 7352976 7353020 -148277100 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 641 7434 126 60 3 chr4 7353021 7354228 -148275892 - Lx3A LINE L1 -10 6971 5696 4 641 210 107 54 0 chr4 7354300 7354356 -148275764 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 641 245 299 0 13 chr4 7354548 7354626 -148275494 - L1MC4 LINE L1 -1044 6998 6922 4 641 2570 268 92 23 chr4 7354649 7354969 -148275151 - RMER1C Other Other -3 1339 998 4 641 486 0 0 0 chr4 7354969 7355023 -148275097 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 641 2570 268 92 23 chr4 7355023 7355576 -148274544 - RMER1C Other Other -345 997 406 4 641 351 0 0 0 chr4 7355882 7355921 -148274199 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 641 501 17 0 0 chr4 7356179 7356237 -148273883 + (TTA)n Simple_repeat Simple_repeat 3 60 0 4 641 27 49 0 0 chr4 7357054 7357095 -148273025 + AT_rich Low_complexity Low_complexity 1 41 0 4 641 304 213 21 21 chr4 7357096 7357192 -148272928 - Lx9 LINE L1 -8 7636 7541 4 641 465 50 0 0 chr4 7357192 7357252 -148272868 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 641 756 231 18 0 chr4 7357255 7357424 -148272696 - Lx9 LINE L1 -179 7465 7294 4 641 530 29 15 0 chr4 7357754 7357822 -148272298 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 4 641 1088 258 96 30 chr4 7358002 7358183 -148271937 - ORR1E LTR MaLR 0 379 160 4 641 2122 67 16 20 chr4 7358183 7358488 -148271632 + L1Md_F2 LINE L1 6279 6582 0 4 641 1088 257 92 31 chr4 7358488 7358649 -148271471 - ORR1E LTR MaLR -200 159 2 4 641 477 50 0 0 chr4 7359082 7359142 -148270978 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 641 333 0 0 0 chr4 7359142 7359178 -148270942 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 641 457 242 61 61 chr4 7360386 7360549 -148269571 - L3 LINE CR1 -1554 2935 2773 4 641 727 320 33 36 chr4 7361139 7361473 -148268647 - MLT1B LTR MaLR -53 337 5 4 641 231 114 0 0 chr4 7361597 7361632 -148268488 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 4 641 291 293 50 0 chr4 7361632 7361731 -148268389 - B1F2 SINE Alu -1 148 45 4 641 3002 109 9 15 chr4 7362277 7362742 -148267378 + Lx LINE L1 6185 6646 -8 4 641 439 56 0 5 chr4 7363558 7363624 -148266496 - B2_Mm2 SINE B2 -106 110 47 4 641 1160 119 17 0 chr4 7363637 7363813 -148266307 - B2_Mm1t SINE B2 -14 179 1 4 641 270 0 0 0 chr4 7364897 7364927 -148265193 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 641 294 143 39 0 chr4 7364938 7365015 -148265105 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 4 641 3090 219 59 3 chr4 7365936 7366546 -148263574 - Lx5 LINE L1 -3 7047 6404 4 641 25 0 0 0 chr4 7367004 7367029 -148263091 + AT_rich Low_complexity Low_complexity 1 25 0 4 641 564 15 0 0 chr4 7367030 7367095 -148263025 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 641 317 280 134 45 chr4 7367113 7367337 -148262783 + L1MEg LINE L1 1302 1545 -4539 4 641 262 360 40 0 chr4 7367918 7368043 -148262077 - MLT1D LTR MaLR -362 143 14 4 641 331 264 87 40 chr4 7368082 7368208 -148261912 + LTR16E1 LTR ERVL 407 538 0 4 641 289 284 72 26 chr4 7368215 7368367 -148261753 + L1MEg LINE L1 1645 1803 -4281 4 641 394 288 142 70 chr4 7368370 7368740 -148261380 - MTD LTR MaLR -3 416 1 4 641 1428 199 60 3 chr4 7369505 7369788 -148260332 - ORR1B2 LTR MaLR -10 357 59 4 641 243 0 0 0 chr4 7369909 7369936 -148260184 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 641 531 0 0 0 chr4 7369936 7369994 -148260126 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 641 1129 331 82 42 chr4 7370077 7370745 -148259375 + Lx8 LINE L1 6549 7243 -230 4 641 465 322 31 101 chr4 7371863 7372219 -148257901 + Lx8 LINE L1 7143 7473 0 4 641 23 0 0 0 chr4 7372421 7372444 -148257676 + AT_rich Low_complexity Low_complexity 1 23 0 4 641 298 336 75 8 chr4 7372501 7372621 -148257499 + ID_B1 SINE B4 89 216 -8 4 641 3260 91 15 6 chr4 7372845 7373320 -148256800 - L1_Mus3 LINE L1 -9 6629 6151 4 641 693 135 16 2 chr4 7373320 7373446 -148256674 + L1_Mus3 LINE L1 6075 6164 -472 4 641 431 297 25 25 chr4 7373723 7373882 -148256238 + HAL1-2a_MD LINE L1 2347 2505 -519 5 641 249 213 0 0 chr4 7373882 7373990 -148256130 + (CAG)n Simple_repeat Simple_repeat 3 110 0 5 641 790 45 0 59 chr4 7374259 7374378 -148255742 + L1_Mus1 LINE L1 6456 6567 0 5 641 1224 54 0 0 chr4 7374405 7374552 -148255568 + B1_Mus2 SINE Alu 1 147 0 5 641 1112 106 0 6 chr4 7374554 7374725 -148255395 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 5 641 601 81 20 20 chr4 7374725 7374826 -148255294 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 5 641 189 0 0 0 chr4 7374929 7374950 -148255170 + (T)n Simple_repeat Simple_repeat 1 21 0 5 641 451 15 29 29 chr4 7375207 7375275 -148254845 + (TCTCTG)n Simple_repeat Simple_repeat 4 71 0 5 641 338 226 17 0 chr4 7380995 7381110 -148249010 + (CATA)n Simple_repeat Simple_repeat 4 120 0 5 641 301 274 19 9 chr4 7381111 7381218 -148248902 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 641 414 221 20 7 chr4 7381218 7381364 -148248756 + (CATA)n Simple_repeat Simple_repeat 4 151 0 5 641 249 202 10 39 chr4 7381410 7381513 -148248607 + (CATA)n Simple_repeat Simple_repeat 2 101 0 5 641 288 0 0 0 chr4 7382582 7382614 -148247506 + (A)n Simple_repeat Simple_repeat 1 32 0 5 641 522 0 0 0 chr4 7383373 7383431 -148246689 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 641 393 207 34 11 chr4 7383698 7383786 -148246334 - MER34A1 LTR ERV1 -486 101 12 5 641 405 312 35 55 chr4 7384838 7385038 -148245082 - L1MD3 LINE L1 -1063 6932 6737 5 641 389 352 30 66 chr4 7385038 7385205 -148244915 + RSINE1 SINE B4 3 163 -2 5 641 200 111 28 0 chr4 7385212 7385248 -148244872 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5 641 320 320 13 33 chr4 7387026 7387178 -148242942 - HAL1-2a_MD LINE L1 -514 2510 2362 5 641 806 309 51 14 chr4 7387212 7387488 -148242632 - B4 SINE B4 -4 288 3 5 641 223 211 160 53 chr4 7387747 7387822 -148242298 - ID4_ SINE ID 0 83 1 5 641 261 346 93 37 chr4 7389225 7389441 -148240679 + ORR1E LTR MaLR 19 246 -113 5 641 229 351 92 20 chr4 7389722 7389917 -148240203 + MIR SINE MIR 13 221 -41 5 641 415 219 12 44 chr4 7390166 7390323 -148239797 - RLTR10E LTR ERVK -4 386 239 5 641 7742 9 0 0 chr4 7390323 7391593 -148238527 - L1Md_A LINE L1 -89 6493 5224 5 641 1640 126 4 8 chr4 7391594 7391850 -148238270 - RLTR10E LTR ERVK -56 255 1 5 641 232 364 13 13 chr4 7391852 7391930 -148238190 - ID_B1 SINE B4 -61 163 86 5 641 4496 174 59 4 chr4 7392809 7393642 -148236478 + Lx2 LINE L1 6105 6983 -14 5 641 209 205 0 0 chr4 7394081 7394120 -148236000 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 641 349 310 31 8 chr4 7395053 7395183 -148234937 - MLT1D LTR MaLR 0 505 373 5 641 296 348 25 3 chr4 7395184 7395298 -148234822 + B1F1 SINE Alu 1 117 -32 5 641 269 190 40 0 chr4 7395324 7395424 -148234696 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 641 535 14 28 0 chr4 7395463 7395535 -148234585 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 641 806 340 69 37 chr4 7395538 7395975 -148234145 + MER21B LTR ERV1 27 477 -386 5 641 396 0 0 0 chr4 7396002 7396046 -148234074 + (TTG)n Simple_repeat Simple_repeat 3 46 0 5 641 1309 180 55 50 chr4 7396061 7396485 -148233635 - RLTR41 LTR ERV1 -67 379 2 5 641 6852 20 12 0 chr4 7398000 7398856 -148231264 - L1Md_T LINE L1 -1424 4459 3594 5 641 9158 21 0 0 chr4 7398860 7399964 -148230156 + L1Md_T LINE L1 4483 5586 -297 5 641 8427 35 0 0 chr4 7399964 7400958 -148229162 + L1Md_T LINE L1 5587 6580 -2 5 641 230 286 0 0 chr4 7401121 7401177 -148228943 + MLT1E3 LTR MaLR 66 121 -503 5 641 1834 222 27 2 chr4 7401332 7401739 -148228381 + MTC LTR MaLR 5 421 0 5 641 25151 139 19 20 chr4 7402511 7408652 -148221468 - L1_Mus3 LINE L1 -1 6637 504 5 641 2294 104 46 38 chr4 7408820 7409191 -148220929 + L1Md_F2 LINE L1 6206 6579 -3 5 641 321 0 91 18 chr4 7409195 7409250 -148220870 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 641 246 216 0 0 chr4 7409740 7409814 -148220306 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 641 182 116 21 104 chr4 7409872 7409920 -148220200 - L3 LINE CR1 -1592 2897 2854 5 641 3533 127 49 5 chr4 7409923 7410533 -148219587 - Lx2 LINE L1 0 6997 6361 5 641 1546 138 13 27 chr4 7410533 7410832 -148219288 + Lx2 LINE L1 6026 6320 -677 5 641 3647 28 28 2 chr4 7410832 7411257 -148218863 + RLTR10C LTR ERVK 1 436 0 5 641 385 320 169 34 chr4 7411263 7411470 -148218650 - B4 SINE B4 -56 236 2 5 641 535 324 17 22 chr4 7412311 7412491 -148217629 - MER2 DNA MER2_type -19 326 148 5 641 438 296 14 50 chr4 7412623 7412762 -148217358 - B1F1 SINE Alu -13 136 3 5 641 257 319 26 17 chr4 7412777 7412892 -148217228 - MTEb LTR MaLR -14 365 250 5 641 23 54 0 0 chr4 7413264 7413301 -148216819 + AT_rich Low_complexity Low_complexity 1 37 0 5 641 870 276 9 0 chr4 7413418 7413632 -148216488 - B3 SINE B2 0 216 1 5 641 1445 304 56 20 chr4 7413776 7414423 -148215697 - Lx8 LINE L1 -324 7149 6480 5 641 1160 82 0 0 chr4 7414874 7415020 -148215100 + B1_Mus1 SINE Alu 3 148 0 5 641 1713 194 56 20 chr4 7415225 7415582 -148214538 + ORR1C1 LTR MaLR 1 370 -8 5 641 240 322 32 53 chr4 7415688 7415973 -148214147 + L1M7 LINE L1 467 745 -5473 5 641 351 264 64 32 chr4 7416111 7416205 -148213915 - B1F SINE Alu -1 148 52 5 641 528 98 0 0 chr4 7416205 7416287 -148213833 - L1_Mus3 LINE L1 -499 6139 6058 5 641 3505 73 31 4 chr4 7416287 7416768 -148213352 + L1_Mus3 LINE L1 6145 6638 0 5 641 789 155 82 44 chr4 7417107 7417289 -148212831 + Lx2 LINE L1 6809 6997 0 5 641 273 336 46 33 chr4 7418484 7418635 -148211485 + MLT1E LTR MaLR 490 642 -11 5 641 725 280 125 14 chr4 7419036 7419477 -148210643 + L1ME1 LINE L1 5439 5928 -251 5 641 513 0 0 0 chr4 7419745 7419802 -148210318 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 641 783 311 48 12 chr4 7420540 7420791 -148209329 + B4A SINE B4 25 284 -8 5 641 287 49 0 24 chr4 7420799 7420841 -148209279 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 641 343 302 41 62 chr4 7420888 7421082 -148209038 + L1MD LINE L1 5189 5378 -768 5 641 330 254 9 12 chr4 7421111 7421249 -148208871 + L1M5 LINE L1 5373 5509 -653 5 641 243 0 0 0 chr4 7421290 7421317 -148208803 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 641 16144 95 20 8 chr4 7421638 7424191 -148205929 + L1Md_F2 LINE L1 419 2994 -2889 5 641 255 31 0 0 chr4 7424191 7424223 -148205897 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 641 16144 79 8 2 chr4 7424223 7424810 -148205310 + L1Md_F2 LINE L1 2995 3591 -2292 5 641 1958 90 0 4 chr4 7424796 7425075 -148205045 + L1Md_F2 LINE L1 5309 5586 -297 5 641 7651 65 1 13 chr4 7425075 7426083 -148204037 + L1Md_F2 LINE L1 5587 6582 0 5 641 180 0 0 0 chr4 7428230 7428250 -148201870 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 641 312 351 109 40 chr4 7429028 7429304 -148200816 - MTEa LTR MaLR -2 377 83 5 641 363 23 0 0 chr4 7429526 7429570 -148200550 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 641 3620 251 49 15 chr4 7429572 7430577 -148199543 - Lx9 LINE L1 -231 7413 6375 5 641 32211 70 2 11 chr4 7430749 7436997 -148193123 - L1Md_F2 LINE L1 -2 6580 388 5 641 1204 335 62 49 chr4 7437033 7437746 -148192374 - MTE-int LTR MaLR -7 1573 716 5 641 348 103 0 0 chr4 7437757 7437815 -148192305 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5 641 1305 175 42 142 chr4 7437862 7437930 -148192190 - ORR1A3 LTR MaLR -2 324 281 5 641 1172 62 7 0 chr4 7437930 7438076 -148192044 - B1_Mus2 SINE Alu 0 147 1 5 641 1305 175 42 142 chr4 7438076 7438367 -148191753 - ORR1A3 LTR MaLR -46 280 1 5 641 428 354 32 28 chr4 7438509 7438759 -148191361 - MTE-int LTR MaLR -1102 478 228 5 641 356 193 24 0 chr4 7438785 7438868 -148191252 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 5 641 3967 140 14 58 chr4 7438891 7439831 -148190289 - Lx4A LINE L1 -882 6091 5163 5 641 313 356 0 8 chr4 7439831 7439961 -148190159 - MTE-int LTR MaLR -1343 237 109 5 641 316 136 34 0 chr4 7439961 7440020 -148190100 - Lx2 LINE L1 -1180 5817 5757 5 641 5716 209 39 25 chr4 7440026 7441478 -148188642 - L1_Mur3 LINE L1 -66 5814 4343 5 641 4156 52 0 0 chr4 7441482 7442017 -148188103 + L1Md_F3 LINE L1 5052 5586 -297 5 641 8142 41 2 3 chr4 7442017 7443014 -148187106 + L1Md_F3 LINE L1 5587 6582 -2 5 641 1606 186 75 5 chr4 7443017 7443417 -148186703 - L1_Mur3 LINE L1 -1537 4343 3916 5 641 21 0 0 0 chr4 7443423 7443444 -148186676 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 1731 159 17 3 chr4 7443445 7443747 -148186373 - Lx3B LINE L1 -4 6969 6664 5 641 5628 115 15 4 chr4 7443750 7444758 -148185362 + Lx3B LINE L1 4998 6019 -954 5 641 5421 212 40 97 chr4 7444763 7446577 -148183543 - L1_Mur3 LINE L1 -2188 3958 2245 5 641 3304 31 18 0 chr4 7446577 7446966 -148183154 - MTA_Mm LTR MaLR 0 396 1 5 641 7813 77 15 5 chr4 7446966 7448053 -148182067 - MTA_Mm-int LTR MaLR 0 1098 1 5 641 3341 43 0 0 chr4 7448053 7448449 -148181671 - MTA_Mm LTR MaLR 0 396 1 5 641 5421 208 36 98 chr4 7448449 7448568 -148181552 - L1_Mur3 LINE L1 -3636 2244 2126 5 641 23 78 0 0 chr4 7449172 7449223 -148180897 + AT_rich Low_complexity Low_complexity 1 51 0 5 641 1829 232 20 7 chr4 7449911 7450315 -148179805 + MTC LTR MaLR 1 409 -12 5 641 2945 29 3 0 chr4 7450334 7450679 -148179441 + ORR1A0 LTR MaLR 1 346 0 5 641 13802 53 14 1 chr4 7450679 7452448 -148177672 + ORR1A0-int LTR MaLR 1 1792 0 5 641 2930 40 0 0 chr4 7452448 7452794 -148177326 + ORR1A0 LTR MaLR 1 346 0 5 641 27 49 0 0 chr4 7453062 7453103 -148177017 + AT_rich Low_complexity Low_complexity 1 41 0 5 641 232 176 0 29 chr4 7453471 7453541 -148176579 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 641 199 208 48 29 chr4 7454120 7454224 -148175896 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 5 641 698 303 61 76 chr4 7454224 7454553 -148175567 - ORR1E LTR MaLR -35 324 1 5 641 5808 75 4 14 chr4 7456995 7457792 -148172328 + L1_Mus2 LINE L1 5776 6564 -2 5 641 257 271 183 5 chr4 7457852 7458060 -148172060 + MusHAL1 LINE L1 343 587 -2125 5 641 248 323 65 15 chr4 7458027 7458228 -148171892 + L1MEg LINE L1 1276 1486 -4598 5 641 241 317 87 57 chr4 7458441 7458705 -148171415 + L1_Mur3 LINE L1 2109 2380 -3500 5 641 21 0 0 0 chr4 7458832 7458853 -148171267 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 240 315 0 0 chr4 7458901 7458974 -148171146 + L1M2 LINE L1 2633 2705 -3438 5 641 338 289 86 34 chr4 7459277 7459380 -148170740 + L1MA4 LINE L1 5686 5795 -505 5 641 483 33 0 0 chr4 7459380 7459441 -148170679 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 641 180 111 0 0 chr4 7459441 7459467 -148170653 + (TATATG)n Simple_repeat Simple_repeat 1 27 0 6 641 338 297 93 41 chr4 7459467 7459713 -148170407 + L1MA4 LINE L1 5767 6015 -1458 5 641 26 0 0 0 chr4 7462139 7462165 -148167955 + AT_rich Low_complexity Low_complexity 1 26 0 6 641 822 51 0 33 chr4 7462590 7462711 -148167409 + L1_Mus2 LINE L1 6450 6566 0 6 641 754 148 35 29 chr4 7462908 7463082 -148167038 + L1Md_F2 LINE L1 6405 6579 -3 6 641 330 115 0 0 chr4 7463167 7463219 -148166901 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 641 234 330 65 11 chr4 7463660 7463752 -148166368 + B4 SINE B4 73 169 -123 6 641 246 176 0 0 chr4 7464131 7464182 -148165938 + T-rich Low_complexity Low_complexity 5 55 0 6 641 4024 66 2 4 chr4 7464239 7464754 -148165366 + L1_Mus1 LINE L1 6054 6567 0 6 641 6348 94 59 10 chr4 7467042 7468010 -148162110 + Lx3_Mus LINE L1 5995 7009 0 6 641 210 200 0 20 chr4 7468898 7468949 -148161171 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 641 22 0 0 0 chr4 7468949 7468971 -148161149 + AT_rich Low_complexity Low_complexity 1 22 0 6 641 22 70 0 0 chr4 7469001 7469044 -148161076 + AT_rich Low_complexity Low_complexity 1 43 0 6 641 609 185 0 0 chr4 7469424 7469543 -148160577 + (TA)n Simple_repeat Simple_repeat 1 119 0 6 641 270 0 0 0 chr4 7469543 7469573 -148160547 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 641 213 94 0 0 chr4 7470311 7470343 -148159777 + (CAG)n Simple_repeat Simple_repeat 2 33 0 6 641 423 299 15 38 chr4 7470406 7470538 -148159582 + LTR88a LTR Gypsy 685 813 -3 6 641 324 0 0 0 chr4 7470803 7470839 -148159281 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 641 21 36 0 0 chr4 7470873 7470901 -148159219 + AT_rich Low_complexity Low_complexity 1 28 0 6 642 21 71 0 0 chr4 7471131 7471173 -148158947 + AT_rich Low_complexity Low_complexity 1 42 0 6 642 257 268 9 14 chr4 7471795 7471867 -148158253 - PB1D10 SINE Alu -228 86 11 6 642 963 283 48 94 chr4 7472163 7472416 -148157704 + MTD LTR MaLR 25 253 -166 6 642 1447 151 0 4 chr4 7472416 7472642 -148157478 - URR1B DNA MER1_type 0 225 1 6 642 963 283 48 94 chr4 7472642 7472802 -148157318 + MTD LTR MaLR 254 418 -1 6 642 22 35 0 0 chr4 7472945 7472974 -148157146 + AT_rich Low_complexity Low_complexity 1 29 0 6 642 234 0 0 0 chr4 7473185 7473211 -148156909 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 642 2490 200 29 9 chr4 7473395 7473954 -148156166 + MYSERV16_I-int LTR ERVK 1577 2146 -180 6 642 4463 99 10 66 chr4 7473985 7474762 -148155358 + RMER17A LTR ERVK 2 735 -16 6 642 426 178 119 0 chr4 7474792 7474910 -148155210 + MYSERV16_I-int LTR ERVK 2194 2325 -1 6 642 2418 204 33 2 chr4 7474913 7475423 -148154697 + RLTR11A LTR ERVK 3 528 0 6 642 545 300 8 0 chr4 7475423 7475553 -148154567 - B3A SINE B2 -66 132 2 6 642 375 294 108 84 chr4 7475830 7476116 -148154004 + L1M5 LINE L1 2631 2923 -3223 6 642 340 225 62 0 chr4 7476278 7476358 -148153762 + ID_B1 SINE B4 140 224 0 6 642 321 26 0 0 chr4 7478267 7478305 -148151815 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 642 504 0 0 0 chr4 7478986 7479042 -148151078 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 642 492 257 100 35 chr4 7479100 7479330 -148150790 - Lx7 LINE L1 -5 7691 7447 6 642 468 0 0 0 chr4 7479389 7479441 -148150679 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 642 245 322 53 27 chr4 7479441 7479591 -148150529 - L1M2 LINE L1 -3167 2976 2823 6 642 4701 63 39 0 chr4 7479581 7480200 -148149920 - L1_Mus1 LINE L1 0 6567 5925 6 642 3993 89 11 0 chr4 7480210 7480759 -148149361 - L1_Mm LINE L1 0 5883 5329 6 642 2832 230 187 20 chr4 7480752 7481592 -148148528 - Lx7 LINE L1 -780 6916 5937 6 642 229 211 0 0 chr4 7481583 7481635 -148148485 - L1_Mur3 LINE L1 -2022 3858 3807 6 642 8759 176 100 38 chr4 7481642 7484252 -148145868 - L1_Mur3 LINE L1 -2286 3594 834 6 642 429 54 0 0 chr4 7484252 7484308 -148145812 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 6 642 2875 212 100 27 chr4 7484308 7484559 -148145561 - L1_Mur3 LINE L1 -6895 833 540 6 642 464 303 32 13 chr4 7485920 7486077 -148144043 - MER5B DNA MER1_type 0 178 19 6 642 438 360 33 17 chr4 7486217 7486398 -148143722 - MER5A DNA MER1_type -2 187 4 6 642 21 36 0 0 chr4 7486829 7486857 -148143263 + AT_rich Low_complexity Low_complexity 1 28 0 6 642 265 215 0 58 chr4 7488283 7488352 -148141768 - PB1D10 SINE Alu -1 116 52 6 642 38 51 0 0 chr4 7488410 7488469 -148141651 + AT_rich Low_complexity Low_complexity 1 59 0 6 642 315 152 10 48 chr4 7488566 7488670 -148141450 + A-rich Low_complexity Low_complexity 2 101 0 6 642 712 216 7 15 chr4 7488869 7489075 -148141045 - Lx7 LINE L1 -138 7558 7380 6 642 250 118 38 50 chr4 7489082 7489162 -148140958 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 642 306 301 39 0 chr4 7490145 7490248 -148139872 + L1MA4 LINE L1 5811 5917 -383 6 642 3665 261 30 5 chr4 7492486 7493343 -148136777 - Lx5 LINE L1 0 7050 6172 6 642 858 205 23 23 chr4 7493633 7493848 -148136272 + Lx6 LINE L1 7241 7455 -5 6 642 26 0 0 0 chr4 7495722 7495748 -148134372 + AT_rich Low_complexity Low_complexity 1 26 0 6 642 21 0 0 0 chr4 7495934 7495955 -148134165 + AT_rich Low_complexity Low_complexity 1 21 0 6 642 579 179 0 0 chr4 7497140 7497280 -148132840 + GA-rich Low_complexity Low_complexity 1 140 0 6 642 22 0 0 0 chr4 7498402 7498424 -148131696 + AT_rich Low_complexity Low_complexity 1 22 0 6 642 3180 58 2 2 chr4 7499050 7499446 -148130674 - MTA_Mm LTR MaLR 0 396 1 6 642 424 355 35 7 chr4 7499769 7499911 -148130209 + RSINE1 SINE B4 15 160 -5 6 642 266 247 180 49 chr4 7500513 7500696 -148129424 - MLT1K LTR MaLR -10 585 379 1 642 369 0 0 0 chr4 7501671 7501712 -148128408 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 642 4446 80 18 24 chr4 7503168 7503798 -148126322 + L1Md_F2 LINE L1 5957 6582 0 3 642 23 0 0 0 chr4 7504186 7504209 -148125911 + AT_rich Low_complexity Low_complexity 1 23 0 4 642 398 20 20 0 chr4 7504239 7504290 -148125830 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 642 569 325 106 0 chr4 7504295 7504446 -148125674 - B3A SINE B2 -30 168 2 6 642 21 0 0 0 chr4 7504581 7504602 -148125518 + AT_rich Low_complexity Low_complexity 1 21 0 7 642 1165 292 102 31 chr4 7504702 7505321 -148124799 + L1MC1 LINE L1 5336 5998 -335 8 642 385 239 84 50 chr4 7505778 7505897 -148124223 - RMER12 LTR ERVK -466 856 734 9 642 414 0 0 0 chr4 7512536 7512582 -148117538 + (CAA)n Simple_repeat Simple_repeat 1 46 0 1 642 26 82 0 0 chr4 7513356 7513417 -148116703 + AT_rich Low_complexity Low_complexity 1 61 0 1 642 4328 155 39 7 chr4 7513497 7514309 -148115811 + L1_Mur1 LINE L1 2519 3356 -2530 1 642 353 274 51 8 chr4 7514302 7514420 -148115700 + Lx8 LINE L1 6698 6820 -653 1 642 1333 289 98 24 chr4 7514438 7514981 -148115139 + Lx8 LINE L1 6889 7471 -2 1 642 957 255 43 9 chr4 7515009 7515242 -148114878 - Lx9 LINE L1 -1016 6628 6388 1 642 554 241 144 34 chr4 7515240 7515476 -148114644 + Lx9 LINE L1 7375 7636 -8 1 642 338 311 159 20 chr4 7516120 7516422 -148113698 - MER2 DNA MER2_type 0 345 2 1 642 383 357 18 78 chr4 7517693 7517860 -148112260 - RSINE1 SINE B4 -6 159 3 1 642 359 327 24 95 chr4 7517957 7518126 -148111994 - RSINE1 SINE B4 0 165 9 1 642 749 375 59 9 chr4 7518963 7519283 -148110837 + ORR1E LTR MaLR 9 344 -15 1 642 852 278 194 55 chr4 7519351 7519995 -148110125 + ORR1E-int LTR MaLR 16 745 -625 1 642 263 309 29 7 chr4 7520030 7520167 -148109953 + L1M3 LINE L1 3301 3440 -2700 2 642 450 0 0 0 chr4 7521104 7521154 -148108966 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 642 241 318 101 23 chr4 7521485 7521614 -148108506 - MER5A DNA MER1_type -50 139 1 2 642 346 336 208 32 chr4 7522014 7522414 -148107706 - Arthur1 DNA Tip100 -3449 498 29 2 642 747 87 0 0 chr4 7524472 7524576 -148105544 + (GA)n Simple_repeat Simple_repeat 1 104 0 2 642 756 332 37 68 chr4 7526378 7526730 -148103390 + MLT1B LTR MaLR 37 377 -13 2 642 434 342 125 31 chr4 7528795 7529154 -148100966 - MER77 LTR ERVL 0 607 215 2 642 261 385 6 81 chr4 7529286 7529447 -148100673 - MER77 LTR ERVL -455 152 4 2 642 886 317 113 16 chr4 7530572 7531315 -148098805 + L1MD LINE L1 3033 3847 -2299 2 642 27 0 0 0 chr4 7531797 7531824 -148098296 + AT_rich Low_complexity Low_complexity 1 27 0 2 642 1133 55 7 0 chr4 7531824 7531969 -148098151 + B1_Mus2 SINE Alu 1 146 -1 2 642 4510 12 0 0 chr4 7532008 7532512 -148097608 + L1Md_T LINE L1 6076 6579 -3 3 642 344 100 0 79 chr4 7532519 7532595 -148097525 + A-rich Low_complexity Low_complexity 1 70 0 3 642 186 43 0 0 chr4 7532937 7532960 -148097160 + (A)n Simple_repeat Simple_repeat 1 23 0 3 642 305 257 163 44 chr4 7533015 7533267 -148096853 + L1MC LINE L1 4753 5034 -1112 3 642 187 73 73 0 chr4 7533301 7533342 -148096778 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 642 310 271 194 17 chr4 7533785 7533965 -148096155 + L1MD LINE L1 5583 5794 -565 2 642 272 96 39 0 chr4 7534031 7534083 -148096037 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 3 642 285 98 0 0 chr4 7534565 7534606 -148095514 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 642 210 158 0 0 chr4 7534745 7534783 -148095337 + T-rich Low_complexity Low_complexity 5 42 0 3 642 550 221 95 7 chr4 7534784 7534836 -148095284 - B1_Mur4 SINE Alu -1 149 89 3 642 527 29 14 0 chr4 7534836 7534905 -148095215 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 642 550 221 95 7 chr4 7534905 7534989 -148095131 - B1_Mur4 SINE Alu -62 88 2 3 642 387 141 0 0 chr4 7535154 7535218 -148094902 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 4 642 633 166 267 6 chr4 7536991 7537167 -148092953 - URR1A DNA MER1_type 0 226 5 4 642 239 0 0 31 chr4 7538077 7538109 -148092011 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 642 7568 123 9 1 chr4 7538144 7539818 -148090302 + Lx LINE L1 4968 6654 0 4 642 232 216 20 0 chr4 7540684 7540735 -148089385 + L1MC4 LINE L1 6786 6837 -1158 4 642 317 348 70 27 chr4 7540753 7541010 -148089110 + L1MC4 LINE L1 6937 7204 -838 4 642 26 30 0 0 chr4 7541011 7541044 -148089076 + AT_rich Low_complexity Low_complexity 1 33 0 4 642 652 292 72 22 chr4 7541089 7541548 -148088572 + L1MA5 LINE L1 5538 5991 -1653 4 642 21 0 0 0 chr4 7542445 7542466 -148087654 + AT_rich Low_complexity Low_complexity 1 21 0 4 642 870 62 0 0 chr4 7543573 7543686 -148086434 + (GA)n Simple_repeat Simple_repeat 2 114 0 4 642 834 64 0 0 chr4 7543797 7543906 -148086214 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 642 672 77 0 0 chr4 7544017 7544108 -148086012 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 642 743 21 32 0 chr4 7544875 7544970 -148085150 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 5 642 2966 198 74 50 chr4 7544970 7545630 -148084490 + RLTR21 LTR ERVK 1 676 -896 5 642 40789 9 2 1 chr4 7545630 7552812 -148077308 - L1Md_A LINE L1 -1 6581 1 5 642 2429 214 43 106 chr4 7552812 7553454 -148076666 + RLTR21 LTR ERVK 656 1255 -317 5 642 230 29 59 0 chr4 7553454 7553488 -148076632 + (TATG)n Simple_repeat Simple_repeat 1 36 0 5 642 2429 216 57 111 chr4 7553488 7553733 -148076387 + RLTR21 LTR ERVK 1157 1460 -112 5 642 336 111 0 0 chr4 7553748 7553811 -148076309 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 642 396 0 0 0 chr4 7554634 7554678 -148075442 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 5 642 4952 68 0 23 chr4 7554770 7555434 -148074686 + L1Md_Gf LINE L1 338 986 -5536 5 642 5549 173 21 27 chr4 7555454 7556976 -148073144 + L1Md_F LINE L1 102 1208 -5411 5 642 36231 33 0 1 chr4 7556982 7561398 -148068722 + L1Md_F LINE L1 1173 5589 -297 5 642 7986 57 0 0 chr4 7561398 7562394 -148067726 + L1Md_T LINE L1 5587 6582 0 5 642 36231 12 26873 6 chr4 7562394 7562560 -148067560 + L1Md_F LINE L1 5590 5595 -291 5 642 30306 44 91 1 chr4 7562526 7566549 -148063571 + L1Md_T LINE L1 1203 5586 -297 6 642 8407 33 1 0 chr4 7566549 7567543 -148062577 + L1Md_T LINE L1 5587 6581 -1 6 642 257 352 28 9 chr4 7567884 7567993 -148062127 + PB1D7 SINE Alu 4 114 -6 6 642 228 333 91 26 chr4 7568011 7568088 -148062032 + ID4_ SINE ID 1 82 -1 6 642 21 57 0 0 chr4 7569082 7569117 -148061003 + AT_rich Low_complexity Low_complexity 1 35 0 6 642 23 0 0 0 chr4 7571199 7571222 -148058898 + AT_rich Low_complexity Low_complexity 1 23 0 6 642 491 282 97 52 chr4 7571672 7572135 -148057985 + L1M4 LINE L1 2995 3478 -2668 6 642 323 264 178 26 chr4 7572225 7572568 -148057552 + L1M4 LINE L1 3717 4111 -2035 6 642 324 331 33 6 chr4 7572578 7572760 -148057360 + L1MB7 LINE L1 5945 6131 -53 6 642 26 0 0 0 chr4 7573896 7573922 -148056198 + AT_rich Low_complexity Low_complexity 1 26 0 6 642 501 260 0 31 chr4 7574219 7574346 -148055774 + Lx8 LINE L1 7209 7331 -142 6 642 369 224 0 0 chr4 7575836 7575961 -148054159 + (CA)n Simple_repeat Simple_repeat 2 126 0 6 642 637 14 0 0 chr4 7576013 7576087 -148054033 + IAPLTR2b LTR ERVK 1 74 -253 7 642 10767 78 37 77 chr4 7576087 7577775 -148052345 + IAPEz-int LTR ERVK 80 1700 -4781 7 642 6301 66 11 8 chr4 7577770 7578595 -148051525 + IAPEz-int LTR ERVK 5653 6479 -2 7 642 2671 31 31 0 chr4 7578597 7578914 -148051206 + IAPLTR2b LTR ERVK 1 327 0 7 642 207 0 0 0 chr4 7578934 7578957 -148051163 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 642 5139 54 0 14 chr4 7578995 7579137 -148050983 - L1Md_F2 LINE L1 0 6582 6449 7 642 2315 107 181 2 chr4 7579137 7579540 -148050580 + IAPLTR2_Mm LTR ERVK 1 475 0 7 642 5139 54 0 14 chr4 7579540 7580056 -148050064 - L1Md_F2 LINE L1 -134 6448 5933 7 642 257 0 0 29 chr4 7580518 7580552 -148049568 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 7 642 456 296 2 114 chr4 7580570 7580789 -148049331 - MT2A LTR ERVL -47 537 342 7 642 462 206 0 58 chr4 7580790 7580893 -148049227 - MT2A LTR ERVL -391 142 46 7 642 540 333 58 0 chr4 7581132 7581306 -148048814 + B3A SINE B2 5 188 -10 7 642 21 36 0 0 chr4 7581596 7581624 -148048496 + AT_rich Low_complexity Low_complexity 1 28 0 7 642 1306 99 80 0 chr4 7585599 7585800 -148044320 - L1_Mus1 LINE L1 0 6567 6351 7 642 25 31 0 0 chr4 7585804 7585836 -148044284 + AT_rich Low_complexity Low_complexity 1 32 0 8 642 339 296 26 0 chr4 7586483 7586598 -148043522 - Lx7 LINE L1 0 7696 7579 8 642 745 275 57 0 chr4 7586624 7586835 -148043285 + Lx7 LINE L1 6521 6743 -953 8 642 18254 71 2 0 chr4 7586835 7589263 -148040857 - L1_Mm LINE L1 -1487 4396 1965 8 642 220 224 15 0 chr4 7589288 7589355 -148040765 + A-rich Low_complexity Low_complexity 4 71 0 8 642 6132 229 76 13 chr4 7589357 7591423 -148038697 - Lx7 LINE L1 -281 7415 5193 8 642 439 82 27 0 chr4 7591589 7591662 -148038458 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 8 642 427 346 125 0 chr4 7591767 7591903 -148038217 + RSINE1 SINE B4 3 155 -10 8 642 246 62 0 0 chr4 7593636 7593668 -148036452 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 642 34 24 0 0 chr4 7595228 7595269 -148034851 + AT_rich Low_complexity Low_complexity 1 41 0 8 642 529 313 143 4 chr4 7595840 7596084 -148034036 + Lx8 LINE L1 6865 7142 -331 8 642 200 289 0 0 chr4 7596247 7596292 -148033828 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 642 36 0 0 0 chr4 7597779 7597815 -148032305 + AT_rich Low_complexity Low_complexity 1 36 0 9 642 210 155 0 49 chr4 7598127 7598188 -148031932 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 9 642 3733 55 0 2 chr4 7599573 7600043 -148030077 + L1_Mus2 LINE L1 6098 6566 0 9 642 449 34 17 0 chr4 7600541 7600600 -148029520 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 642 1648 297 21 24 chr4 7600600 7601395 -148028725 - L1M2 LINE L1 -391 5489 4692 9 642 646 339 116 36 chr4 7601561 7602145 -148027975 + Charlie7 DNA MER1_type 584 1214 -1398 9 643 1627 279 67 84 chr4 7602408 7602902 -148027218 + Lx6 LINE L1 6386 7265 -195 9 643 4406 118 61 14 chr4 7602902 7603609 -148026511 - Lx2 LINE L1 -6 6991 6252 9 643 1627 273 59 77 chr4 7603609 7603787 -148026333 + Lx6 LINE L1 7266 7434 -26 9 643 308 191 107 0 chr4 7603966 7604050 -148026070 + Charlie7 DNA MER1_type 1706 1798 -814 9 643 4054 242 68 38 chr4 7604229 7605453 -148024667 + Lx9 LINE L1 6077 7476 -168 9 643 351 0 0 0 chr4 7605456 7605495 -148024625 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 643 323 229 27 45 chr4 7605502 7605612 -148024508 + Lx9 LINE L1 7533 7640 -4 9 643 3068 40 0 0 chr4 7605651 7606023 -148024097 - L1_Mus3 LINE L1 -608 6030 5659 1 643 367 255 19 0 chr4 7606050 7606156 -148023964 - Lx9 LINE L1 -219 7425 7318 1 643 8044 48 1 2 chr4 7606173 7607309 -148022811 - L1Md_F2 LINE L1 -12 6570 5436 1 643 732 309 76 25 chr4 7607331 7607720 -148022400 + MTEa-int LTR MaLR 1170 1578 -2 1 643 661 289 72 103 chr4 7607724 7608113 -148022007 + MTEa LTR MaLR 3 379 0 1 643 900 284 16 55 chr4 7608545 7608756 -148021364 + B4 SINE B4 2 213 -79 1 643 216 0 0 0 chr4 7608756 7608780 -148021340 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 643 900 284 16 55 chr4 7608780 7608825 -148021295 + B4 SINE B4 214 248 -44 1 643 21 0 0 0 chr4 7609369 7609390 -148020730 + AT_rich Low_complexity Low_complexity 1 21 0 1 643 397 32 16 31 chr4 7611480 7611544 -148018576 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 1 643 244 286 0 16 chr4 7611953 7612017 -148018103 + MLT1A LTR MaLR 36 98 -276 1 643 240 319 164 12 chr4 7612066 7612231 -148017889 + MLT1A LTR MaLR 198 387 -3 1 643 1055 255 95 35 chr4 7612809 7613146 -148016974 - ORR1D2 LTR MaLR -2 377 3 1 643 3841 170 17 6 chr4 7614747 7615391 -148014729 - Lx4A LINE L1 -11 7047 6397 1 643 444 313 114 102 chr4 7615431 7615783 -148014337 + MLT1A LTR MaLR 17 372 -2 1 643 22 35 0 0 chr4 7617059 7617088 -148013032 + AT_rich Low_complexity Low_complexity 1 29 0 1 643 210 398 11 54 chr4 7618117 7618210 -148011910 + B4A SINE B4 76 164 -128 1 643 494 268 89 0 chr4 7618140 7618263 -148011857 + B1F SINE Alu 10 143 -6 1 643 432 0 0 0 chr4 7618263 7618311 -148011809 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 643 2974 158 38 14 chr4 7618778 7619165 -148010955 + L1_Mur3 LINE L1 3306 3695 -2185 1 643 372 22 0 0 chr4 7619165 7619210 -148010910 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 643 2974 158 38 14 chr4 7619210 7619398 -148010722 + L1_Mur3 LINE L1 3696 3895 -1985 1 643 4559 302 27 41 chr4 7619415 7621904 -148008216 - MMERVK10C-int LTR ERVK -4066 3515 1166 1 643 202 338 0 36 chr4 7622206 7622289 -148007831 + T-rich Low_complexity Low_complexity 4 83 0 1 643 590 234 84 32 chr4 7622289 7622479 -148007641 - MMERVK10C-int LTR ERVK -1133 854 655 1 643 380 70 7 0 chr4 7622511 7622564 -148007556 - MMERVK10C-int LTR ERVK -7314 267 163 1 643 2163 88 48 0 chr4 7622588 7622883 -148007237 - RLTR27 LTR ERVK 0 309 1 1 643 5103 158 55 18 chr4 7622884 7623701 -148006419 + L1_Mur3 LINE L1 3950 4805 -1075 1 643 306 0 0 0 chr4 7623701 7623735 -148006385 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 643 5103 158 55 18 chr4 7623735 7623997 -148006123 + L1_Mur3 LINE L1 4806 5068 -812 1 643 469 276 16 0 chr4 7624309 7624432 -148005688 + B4 SINE B4 6 130 -162 1 643 293 263 69 39 chr4 7625536 7625749 -148004371 + MTE2b LTR MaLR 3 306 -73 1 643 767 150 0 7 chr4 7626115 7626256 -148003864 - Lx2 LINE L1 -1 6996 6857 1 643 3268 182 0 3 chr4 7626259 7626853 -148003267 - L1_Mm LINE L1 -888 4995 4404 1 643 4405 142 24 0 chr4 7626851 7627599 -148002521 + L1_Mur2 LINE L1 3632 4397 -1480 1 643 546 86 0 0 chr4 7627835 7627916 -148002204 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 643 1679 311 57 11 chr4 7628022 7628685 -148001435 + Lx9 LINE L1 6398 7091 -553 1 643 355 361 96 30 chr4 7628687 7629016 -148001104 + Lx9 LINE L1 6970 7457 -187 1 643 786 89 0 0 chr4 7629031 7629143 -148000977 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 643 25 0 0 0 chr4 7629272 7629297 -148000823 + AT_rich Low_complexity Low_complexity 1 25 0 1 643 4878 36 0 0 chr4 7629303 7629893 -148000227 + L1Md_F3 LINE L1 4026 4615 -1268 1 643 37294 22 4 7 chr4 7629899 7635486 -147994634 + L1Md_A LINE L1 26 5586 -297 1 643 8672 20 0 0 chr4 7635486 7636482 -147993638 + L1Md_A LINE L1 5587 6582 0 1 643 37294 18 2 0 chr4 7636482 7636493 -147993627 + L1Md_A LINE L1 5587 5601 -282 1 643 7428 67 4 0 chr4 7636494 7637464 -147992656 + L1Md_F3 LINE L1 4613 5586 -297 1 643 7954 49 2 2 chr4 7637464 7638460 -147991660 + L1Md_F3 LINE L1 5587 6582 -2 1 643 235 226 0 0 chr4 7638620 7638673 -147991447 + L1M3 LINE L1 4337 4389 -1751 1 643 485 301 8 0 chr4 7638880 7639003 -147991117 + RSINE1 SINE B4 11 134 -31 1 643 540 89 0 0 chr4 7639007 7639086 -147991034 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 643 370 313 125 60 chr4 7639093 7639429 -147990691 + L1MC3 LINE L1 7418 7775 -10 1 643 367 312 94 0 chr4 7639755 7639893 -147990227 - MER2 DNA MER2_type -193 152 2 1 643 21 71 0 0 chr4 7640020 7640062 -147990058 + AT_rich Low_complexity Low_complexity 1 42 0 1 643 735 193 7 7 chr4 7640070 7640211 -147989909 + B1_Mur2 SINE Alu 1 141 -8 1 643 192 40 0 0 chr4 7640302 7640327 -147989793 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 643 237 33 0 0 chr4 7640791 7640821 -147989299 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 643 369 356 48 64 chr4 7643402 7643714 -147986406 + Lx8 LINE L1 7165 7471 -2 1 643 757 339 35 24 chr4 7643898 7644152 -147985968 + B4 SINE B4 1 257 -35 1 643 1136 42 28 0 chr4 7644154 7644296 -147985824 + B1_Mus1 SINE Alu 2 147 -1 1 643 247 61 40 20 chr4 7644299 7644349 -147985771 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 643 395 46 56 22 chr4 7644468 7644557 -147985563 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 643 25 75 0 0 chr4 7645249 7645302 -147984818 + AT_rich Low_complexity Low_complexity 1 53 0 1 643 517 292 81 90 chr4 7645418 7645975 -147984145 + L1_Rod LINE L1 5161 5780 -520 1 643 240 167 0 0 chr4 7645983 7646031 -147984089 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 643 187 185 45 15 chr4 7646340 7646406 -147983714 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 1 643 201 182 0 0 chr4 7646661 7646694 -147983426 + T-rich Low_complexity Low_complexity 1 33 0 1 643 2040 68 11 0 chr4 7646698 7646964 -147983156 - L1_Mus1 LINE L1 0 6567 6299 1 643 1390 234 53 76 chr4 7647174 7647778 -147982342 - RLTR31_Mm LTR ERVK -1 560 94 1 643 600 14 0 0 chr4 7647778 7647847 -147982273 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 643 1390 236 63 70 chr4 7647847 7647938 -147982182 - RLTR31_Mm LTR ERVK -405 156 8 1 643 1232 284 121 28 chr4 7648895 7649618 -147980502 + Lx8 LINE L1 5095 5915 -1558 1 643 1114 95 0 0 chr4 7650033 7650180 -147979940 + B1_Mus1 SINE Alu 2 148 0 1 643 396 291 169 17 chr4 7650218 7650396 -147979724 + B3 SINE B2 2 206 -10 1 643 1179 41 47 0 chr4 7650554 7650723 -147979397 + (TTTTC)n Simple_repeat Simple_repeat 4 180 0 1 643 1843 107 42 26 chr4 7650723 7651029 -147979091 - Lx LINE L1 -12 6642 6332 1 643 2453 198 81 66 chr4 7651130 7651844 -147978276 - Lx9 LINE L1 -1 7643 6919 1 643 201 171 0 0 chr4 7652471 7652506 -147977614 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 643 750 312 0 45 chr4 7652578 7652776 -147977344 - B3A SINE B2 -9 189 1 1 643 463 253 42 63 chr4 7652829 7652972 -147977148 + B1F SINE Alu 1 141 -9 1 643 369 0 0 0 chr4 7652984 7653025 -147977095 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 643 1627 205 58 6 chr4 7654191 7654539 -147975581 + Lx5 LINE L1 6681 7046 -4 1 643 22 35 0 0 chr4 7654841 7654870 -147975250 + AT_rich Low_complexity Low_complexity 1 29 0 1 643 460 268 61 44 chr4 7655005 7655035 -147975085 - B2_Mm2 SINE B2 -11 184 156 1 643 387 0 0 0 chr4 7655035 7655078 -147975042 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 643 576 230 114 5 chr4 7655078 7655227 -147974893 - B3A SINE B2 -40 155 2 1 643 245 259 45 45 chr4 7655403 7655492 -147974628 - RMER12 LTR ERVK -490 832 744 1 643 335 304 0 0 chr4 7655972 7656074 -147974046 + MER2 DNA MER2_type 126 227 -118 1 643 27 49 0 0 chr4 7656292 7656333 -147973787 + AT_rich Low_complexity Low_complexity 1 41 0 1 643 239 296 80 38 chr4 7656387 7656650 -147973470 + L1M5 LINE L1 3951 4224 -1922 1 643 329 232 30 0 chr4 7657289 7657388 -147972732 + L1M5 LINE L1 5344 5445 -719 1 643 414 0 0 0 chr4 7657908 7657954 -147972166 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 643 22 0 0 0 chr4 7658730 7658752 -147971368 + AT_rich Low_complexity Low_complexity 1 22 0 1 643 204 40 0 0 chr4 7659008 7659033 -147971087 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 643 23 97 0 0 chr4 7659792 7659864 -147970256 + AT_rich Low_complexity Low_complexity 1 72 0 1 643 646 226 70 6 chr4 7659951 7660107 -147970013 - L1_Mur2 LINE L1 -321 5556 5391 1 643 667 234 24 0 chr4 7660105 7660272 -147969848 + Lx5 LINE L1 6869 7039 -11 1 643 309 162 13 93 chr4 7660274 7660349 -147969771 + RLTR25B LTR ERVK 430 498 -530 1 643 795 109 0 0 chr4 7660288 7660398 -147969722 + B1_Mm SINE Alu 38 147 0 1 643 30 27 0 0 chr4 7660398 7660435 -147969685 + AT_rich Low_complexity Low_complexity 1 37 0 1 643 35250 48 0 4 chr4 7660835 7666292 -147963828 + L1Md_T LINE L1 56 5589 -297 1 643 8365 35 0 0 chr4 7666292 7667288 -147962832 + L1Md_T LINE L1 5590 6585 0 1 643 1062 316 52 12 chr4 7669653 7670246 -147959874 + L1MC3 LINE L1 7127 7743 -42 1 643 1541 175 14 46 chr4 7670629 7670976 -147959144 - Lx3C LINE L1 -7 6969 6634 1 643 303 133 0 0 chr4 7671026 7671071 -147959049 + Lx2 LINE L1 6578 6622 -378 1 643 5380 128 35 23 chr4 7671067 7671407 -147958713 + L1Md_F2 LINE L1 308 651 -5965 1 643 2958 63 39 0 chr4 7671407 7671788 -147958332 + MTA_Mm LTR MaLR 1 396 0 1 643 5380 107 31 14 chr4 7671788 7672670 -147957450 + L1Md_F2 LINE L1 652 1549 -4334 1 643 27386 76 9 3 chr4 7672666 7677073 -147953047 + L1Md_F2 LINE L1 2161 6582 0 1 643 1864 147 36 0 chr4 7677106 7677413 -147952707 + Lx2 LINE L1 6673 6990 -7 1 643 26 30 0 0 chr4 7677673 7677706 -147952414 + AT_rich Low_complexity Low_complexity 1 33 0 1 643 279 276 80 48 chr4 7677986 7678202 -147951918 + MER34A1 LTR ERV1 391 729 -58 1 643 296 225 51 32 chr4 7678561 7678717 -147951403 + L1M4c LINE L1 1047 1205 -5179 1 643 276 30 0 0 chr4 7679381 7679414 -147950706 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 643 24 39 0 38 chr4 7679532 7679552 -147950568 + AT_rich Low_complexity Low_complexity 1 20 0 1 643 468 267 161 0 chr4 7679552 7679732 -147950388 + B3 SINE B2 1 209 -7 1 643 24 39 0 38 chr4 7679732 7679764 -147950356 + AT_rich Low_complexity Low_complexity 1 31 0 1 643 402 115 0 0 chr4 7680144 7680205 -147949915 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 643 411 132 0 0 chr4 7683044 7683112 -147947008 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 643 384 337 63 33 chr4 7683466 7683736 -147946384 - L1MD2 LINE L1 -249 6110 5833 2 643 278 253 31 10 chr4 7683841 7683937 -147946183 - L1MD2 LINE L1 -962 5184 5087 2 643 476 290 101 41 chr4 7683961 7684446 -147945674 + L1MD LINE L1 4189 4702 -1444 2 643 3755 229 99 16 chr4 7684497 7685391 -147944729 + Lx7 LINE L1 6363 7337 -359 2 643 186 43 0 0 chr4 7685391 7685414 -147944706 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 643 3755 229 99 16 chr4 7685414 7685484 -147944636 + Lx7 LINE L1 7338 7408 -288 2 643 1434 331 29 45 chr4 7685582 7686141 -147943979 - Lx5 LINE L1 -18 7032 6483 2 643 811 323 50 19 chr4 7686166 7686526 -147943594 - Lx6 LINE L1 -1190 6270 5900 2 643 2158 102 13 7 chr4 7686527 7686834 -147943286 + RLTR27 LTR ERVK 1 309 0 2 643 351 87 0 0 chr4 7686866 7686912 -147943208 + RLTR10-int LTR ERVK 222 267 -7314 2 643 538 265 55 55 chr4 7686942 7687142 -147942978 + RLTR10-int LTR ERVK 653 852 -1135 2 643 288 248 130 28 chr4 7687243 7687351 -147942769 + RLTR10-int LTR ERVK 797 915 -6765 2 643 3342 318 52 36 chr4 7687509 7689591 -147940529 + IAP-d-int LTR ERVK 673 2786 -3756 2 643 1724 255 39 43 chr4 7689647 7690290 -147939830 + MMERVK10C-int LTR ERVK 4838 5477 -2104 2 643 1338 235 47 33 chr4 7690780 7691343 -147938777 + MMERVK10C-int LTR ERVK 6907 7581 0 2 643 2192 102 13 7 chr4 7691343 7691650 -147938470 + RLTR27 LTR ERVK 1 309 0 2 643 800 161 18 12 chr4 7691652 7691815 -147938305 - Lx5 LINE L1 -1145 5905 5742 2 643 7442 81 27 0 chr4 7691844 7693162 -147936958 - L1_Mus1 LINE L1 0 6567 5224 2 643 5562 126 20 46 chr4 7693160 7694253 -147935867 - L1_Mus1 LINE L1 -3693 2190 1127 2 643 239 71 24 0 chr4 7694253 7694295 -147935825 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 643 2950 182 49 97 chr4 7694295 7694920 -147935200 - L1_Mus1 LINE L1 -5490 1126 532 2 643 15104 199 41 50 chr4 7694913 7698216 -147931904 - Lx5 LINE L1 -131 5749 2453 2 643 1155 75 12 6 chr4 7698216 7698389 -147931731 + (TATATG)n Simple_repeat Simple_repeat 4 177 0 2 643 15104 199 41 50 chr4 7698389 7698896 -147931224 - Lx5 LINE L1 -3428 2452 1972 2 643 463 305 65 24 chr4 7698896 7699064 -147931056 + MTE2b LTR MaLR 201 375 -4 2 643 1058 241 0 18 chr4 7700216 7700440 -147929680 - URR1A DNA MER1_type -5 221 2 2 643 32 43 0 0 chr4 7700588 7700634 -147929486 + AT_rich Low_complexity Low_complexity 1 46 0 2 643 350 278 42 30 chr4 7700838 7701005 -147929115 + L1M2 LINE L1 2866 3034 -3109 2 643 4171 111 22 4 chr4 7701013 7702077 -147928043 + L1VL4 LINE L1 390 1474 -2085 2 643 10294 144 34 28 chr4 7702079 7702578 -147927542 + L1_Mur2 LINE L1 2834 3361 -2516 2 643 2806 65 33 64 chr4 7702578 7703002 -147927118 - RLTR9F LTR ERVK -4 411 1 2 643 10294 144 34 28 chr4 7703002 7703036 -147927084 + L1_Mur2 LINE L1 3362 3385 -2492 2 643 4486 55 32 2 chr4 7703036 7703606 -147926514 + LTRIS_Mus LTR ERV1 1 587 0 2 643 10294 144 34 28 chr4 7703606 7704685 -147925435 + L1_Mur2 LINE L1 3386 4456 -1421 2 643 7389 89 18 3 chr4 7704685 7705703 -147924417 - RLTR13D4 LTR ERVK 0 1033 1 2 643 10294 144 34 28 chr4 7705703 7705972 -147924148 + L1_Mur2 LINE L1 4457 4730 -1147 2 643 228 35 0 0 chr4 7705972 7706001 -147924119 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2 643 10294 144 34 28 chr4 7706001 7706065 -147924055 + L1_Mur2 LINE L1 4731 4792 -1085 2 643 6792 106 18 4 chr4 7706056 7707070 -147923050 + L1_Mus4 LINE L1 5560 6630 -6 2 643 234 0 0 0 chr4 7707070 7707096 -147923024 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 643 769 220 82 16 chr4 7707098 7707292 -147922828 + B3 SINE B2 2 208 -8 2 643 275 155 87 0 chr4 7707292 7707395 -147922725 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 643 397 279 47 20 chr4 7707414 7707726 -147922394 + L1M2 LINE L1 3036 3320 -2560 2 643 832 256 9 14 chr4 7707828 7708038 -147922082 + B3 SINE B2 3 211 -5 2 643 1037 102 0 0 chr4 7708066 7708203 -147921917 + B1_Mus1 SINE Alu 11 147 -1 2 643 3753 55 2 0 chr4 7708789 7709245 -147920875 - L1Md_F2 LINE L1 -78 6504 6048 2 643 497 80 23 0 chr4 7709245 7709333 -147920787 + L1Md_F2 LINE L1 6493 6582 0 2 643 25 31 0 0 chr4 7709532 7709564 -147920556 + AT_rich Low_complexity Low_complexity 1 32 0 2 643 522 264 7 52 chr4 7709704 7709840 -147920280 + B1_Mur3 SINE Alu 18 147 -2 2 643 270 81 0 0 chr4 7709840 7709877 -147920243 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2 643 2691 105 2 2 chr4 7709878 7710269 -147919851 + L1_Mus1 LINE L1 5874 6616 -360 2 643 1949 247 24 32 chr4 7710311 7710705 -147919415 + MYSERV16_I-int LTR ERVK 2 316 -2010 2 643 750 138 0 21 chr4 7710705 7710846 -147919274 - L1Md_F2 LINE L1 -2 6580 6443 2 643 1949 237 14 27 chr4 7710846 7711047 -147919073 + MYSERV16_I-int LTR ERVK 317 509 -1817 2 643 1036 169 99 5 chr4 7711049 7711251 -147918869 + RLTR15 LTR ERVK 139 359 0 2 643 232 309 30 30 chr4 7711461 7711561 -147918559 + MIR SINE MIR 10 109 -153 2 643 232 250 55 14 chr4 7712506 7712579 -147917541 - L1M4b LINE L1 -766 6278 6203 2 643 1183 252 52 84 chr4 7712576 7713075 -147917045 - Lx9 LINE L1 -246 7398 6916 2 643 249 208 0 85 chr4 7713201 7713298 -147916822 - L1M4b LINE L1 -1580 5426 5339 2 643 325 338 40 0 chr4 7713384 7713509 -147916611 - B1F SINE Alu -18 131 2 2 643 598 296 124 27 chr4 7713534 7714009 -147916111 - L1M4b LINE L1 -1674 5332 4812 2 643 4288 59 43 28 chr4 7714013 7714590 -147915530 - LTRIS_Mus LTR ERV1 0 587 2 2 643 315 374 8 24 chr4 7715031 7715157 -147914963 + Tigger5 DNA MER2_type 4 127 -2279 2 643 679 299 156 34 chr4 7715388 7715915 -147914205 - L1M4b LINE L1 -5820 1514 924 2 643 325 405 136 55 chr4 7715974 7716647 -147913473 - L1M4b LINE L1 -6513 821 92 2 643 5853 93 19 16 chr4 7716647 7717488 -147912632 + Lx3_Mus LINE L1 6165 7008 -1 2 643 325 405 136 55 chr4 7717488 7717573 -147912547 - L1M4b LINE L1 -7243 91 2 2 643 390 336 0 47 chr4 7717691 7717819 -147912301 + ID_B1 SINE B4 78 199 -25 2 643 371 73 0 18 chr4 7717821 7717877 -147912243 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 2 643 4010 74 0 0 chr4 7718156 7718671 -147911449 - L1_Mus1 LINE L1 -1 6566 6052 2 643 5749 117 18 6 chr4 7718671 7719566 -147910554 - L1_Mm LINE L1 -181 5702 4797 2 643 401 72 0 14 chr4 7721418 7721488 -147908632 - L1Md_F2 LINE L1 0 6582 6514 2 643 1640 88 12 4 chr4 7721488 7721728 -147908392 - L1_Mus3 LINE L1 -16 6622 6381 2 643 202 230 21 84 chr4 7724527 7724622 -147905498 + A-rich Low_complexity Low_complexity 5 93 0 2 643 701 114 9 0 chr4 7725232 7725346 -147904774 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 643 351 365 80 55 chr4 7725566 7725649 -147904471 + MLT1A LTR MaLR 1 79 -295 2 643 1007 81 0 13 chr4 7725649 7725799 -147904321 + L1Md_F2 LINE L1 6434 6581 -1 2 643 351 365 80 55 chr4 7725799 7726080 -147904040 + MLT1A LTR MaLR 80 374 0 2 643 4882 101 8 1 chr4 7726108 7726824 -147903296 - Lx LINE L1 -333 6321 5601 2 643 495 0 0 0 chr4 7726916 7726971 -147903149 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 643 405 0 0 0 chr4 7726971 7727015 -147903105 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 643 413 261 150 37 chr4 7727316 7727503 -147902617 + MER2 DNA MER2_type 83 290 -55 2 643 6885 39 0 0 chr4 7728073 7728931 -147901189 - L1Md_F2 LINE L1 -12 6570 5713 2 643 23 97 0 0 chr4 7729544 7729616 -147900504 + AT_rich Low_complexity Low_complexity 1 72 0 2 643 25 65 0 0 chr4 7730148 7730194 -147899926 + AT_rich Low_complexity Low_complexity 1 46 0 2 643 353 335 44 100 chr4 7730854 7731103 -147899017 + MLT1B LTR MaLR 1 235 -155 2 643 307 224 0 45 chr4 7731881 7731970 -147898150 + CT-rich Low_complexity Low_complexity 3 87 0 2 643 3765 119 52 8 chr4 7732396 7732987 -147897133 - L1_Mus4 LINE L1 -7 6629 6013 2 80 786 226 101 50 chr4 7733151 7733389 -147896731 + RLTR14 LTR ERV1 3 252 -130 2 644 8583 9 0 0 chr4 7733556 7734951 -147895169 - L1Md_T LINE L1 -2 6580 5186 2 644 284 302 140 31 chr4 7735475 7735704 -147894416 - Cheshire DNA MER1_type -50 2370 2117 2 644 527 282 117 51 chr4 7735729 7736002 -147894118 - Cheshire DNA MER1_type -1134 1286 996 2 644 241 314 50 0 chr4 7736069 7736209 -147893911 - L1MD2 LINE L1 -383 5976 5830 2 644 277 264 143 20 chr4 7736331 7736582 -147893538 - L1M5 LINE L1 -513 5666 5385 2 644 7045 122 22 39 chr4 7736875 7738703 -147891417 + L1Md_F2 LINE L1 412 2434 -3449 2 644 9162 119 33 26 chr4 7738713 7740933 -147889187 + L1Md_F2 LINE L1 4310 6567 -15 2 644 1920 118 86 0 chr4 7740933 7741246 -147888874 + L1_Mm LINE L1 5471 5810 -73 2 644 4721 111 78 19 chr4 7741251 7741674 -147888446 + RMER17D LTR ERVK 1 426 -463 2 644 996 91 17 0 chr4 7741674 7741850 -147888270 + (TC)n Simple_repeat Simple_repeat 1 179 0 2 644 4721 111 78 19 chr4 7741850 7742251 -147887869 + RMER17D LTR ERVK 427 872 -17 2 644 5576 94 21 10 chr4 7742254 7743055 -147887065 + L1_Mus3 LINE L1 5823 6632 -6 2 644 946 130 62 0 chr4 7743073 7743234 -147886886 - Lx LINE L1 -188 6466 6296 2 644 277 276 33 33 chr4 7743427 7743547 -147886573 - L1MDa LINE L1 -6452 181 62 2 644 1659 282 86 46 chr4 7743572 7744271 -147885849 - Cheshire DNA MER1_type -1517 903 177 2 644 37 39 0 0 chr4 7744899 7744950 -147885170 + AT_rich Low_complexity Low_complexity 1 51 0 2 644 22 0 0 0 chr4 7745722 7745744 -147884376 + AT_rich Low_complexity Low_complexity 1 22 0 2 644 366 314 29 0 chr4 7745854 7745956 -147884164 - PB1D7 SINE Alu -11 109 5 2 644 913 166 11 0 chr4 7746351 7746526 -147883594 - L1_Mur2 LINE L1 -768 5109 4933 2 644 1448 172 21 0 chr4 7746509 7746777 -147883343 + Lx4B LINE L1 6024 6480 -578 2 644 526 201 82 16 chr4 7746891 7747078 -147883042 + RMER4B LTR ERVK 343 576 -9 2 644 647 319 81 26 chr4 7747100 7747430 -147882690 + MTD LTR MaLR 53 400 -19 2 644 3154 34 3 0 chr4 7747430 7747809 -147882311 + L1Md_F2 LINE L1 6203 6582 0 2 644 647 319 81 26 chr4 7747809 7747826 -147882294 + MTD LTR MaLR 401 418 -1 2 644 1948 247 57 52 chr4 7748566 7749963 -147880157 + RMER1B Other Other 1 1055 -11 2 644 326 329 168 35 chr4 7749965 7750138 -147879982 + ID_B1 SINE B4 11 206 -18 2 644 285 187 25 51 chr4 7750439 7750518 -147879602 - MTEa LTR MaLR -2 377 301 2 644 4282 42 2 2 chr4 7750686 7751206 -147878914 + L1Md_F2 LINE L1 6060 6579 -3 2 644 979 214 141 31 chr4 7751990 7752280 -147877840 + ORR1D1 LTR MaLR 5 326 -48 2 644 198 0 0 0 chr4 7752444 7752466 -147877654 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 644 27 49 0 0 chr4 7752484 7752525 -147877595 + AT_rich Low_complexity Low_complexity 1 41 0 2 644 2560 176 116 8 chr4 7752913 7753439 -147876681 + RMER4B LTR ERVK 1 583 -2 2 644 624 114 59 34 chr4 7753443 7753561 -147876559 + RMER4A LTR ERVK 308 428 -38 2 644 1563 277 82 31 chr4 7753639 7754347 -147875773 + Lx9 LINE L1 6900 7643 -1 2 644 862 343 27 17 chr4 7754374 7754786 -147875334 - Lx9 LINE L1 -862 6782 6367 2 644 728 304 127 21 chr4 7755016 7755487 -147874633 + Lx9 LINE L1 6769 7289 -355 2 644 317 302 120 19 chr4 7755802 7755910 -147874210 - PB1D9 SINE Alu -1 119 1 2 644 326 271 10 10 chr4 7757490 7757587 -147872533 - Lx7 LINE L1 -438 7258 7162 2 644 266 86 56 28 chr4 7757609 7757681 -147872439 + A-rich Low_complexity Low_complexity 2 75 0 2 644 507 212 45 0 chr4 7757683 7757815 -147872305 + Lx7 LINE L1 6769 6906 -790 3 644 2074 92 3 69 chr4 7757830 7758179 -147871941 - IAPLTR1a_Mm LTR ERVK -11 326 1 3 644 55191 14 4 5 chr4 7758179 7764664 -147865456 - IAPEz-int LTR ERVK 0 6481 1 3 644 2074 92 3 69 chr4 7764665 7765014 -147865106 - IAPLTR1a_Mm LTR ERVK -11 326 1 3 644 748 270 58 4 chr4 7765016 7765258 -147864862 + Lx7 LINE L1 6910 7164 -532 3 644 2085 143 16 0 chr4 7765398 7765720 -147864400 + ORR1A2 LTR MaLR 1 327 0 3 644 245 266 30 45 chr4 7765832 7765899 -147864221 + MER5A DNA MER1_type 40 105 -84 3 644 22 0 0 0 chr4 7765980 7766002 -147864118 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 250 250 29 0 chr4 7766998 7767066 -147863054 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 3 644 347 276 81 0 chr4 7768631 7768718 -147861402 - PB1D10 SINE Alu -17 100 7 3 644 503 221 103 32 chr4 7768848 7768974 -147861146 - RLTR25B LTR ERVK -2 1026 892 3 644 550 248 333 15 chr4 7768987 7769257 -147860863 - RMER15 LTR ERVL -192 383 28 3 644 424 267 108 36 chr4 7769349 7769598 -147860522 + Tigger7 DNA MER2_type 2131 2397 -94 3 644 459 0 0 0 chr4 7769601 7769652 -147860468 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 644 233 167 21 0 chr4 7769712 7769760 -147860360 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 644 240 143 0 0 chr4 7769761 7769803 -147860317 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 644 245 385 0 0 chr4 7769813 7769878 -147860242 + Tigger7 DNA MER2_type 2425 2489 -2 3 644 23 33 0 0 chr4 7770084 7770114 -147860006 + AT_rich Low_complexity Low_complexity 1 30 0 3 644 224 30 30 0 chr4 7770501 7770534 -147859586 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 644 2451 278 58 36 chr4 7771921 7772831 -147857289 + Lx8 LINE L1 6262 7191 -282 3 644 408 311 7 77 chr4 7773740 7773883 -147856237 + MER67A LTR ERV1 1 133 -410 3 644 240 304 18 0 chr4 7773839 7773895 -147856225 + ID4_ SINE ID 19 75 -8 3 644 217 293 17 33 chr4 7773844 7773904 -147856216 + ID SINE ID 25 83 -141 3 644 4683 74 2 0 chr4 7774086 7774683 -147855437 - L1_Mus1 LINE L1 -1 6566 5969 3 644 616 317 122 29 chr4 7774697 7775009 -147855111 + MER67A LTR ERV1 203 543 0 3 644 188 143 24 0 chr4 7777448 7777490 -147852630 + A-rich Low_complexity Low_complexity 1 43 0 3 644 223 323 128 0 chr4 7780153 7780286 -147849834 + MIR3 SINE MIR 57 206 -2 3 644 316 277 64 0 chr4 7780346 7780440 -147849680 + L3 LINE CR1 4381 4480 -9 3 644 255 79 0 0 chr4 7781500 7781538 -147848582 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 644 1021 278 40 40 chr4 7783104 7783482 -147846638 - Lx7 LINE L1 -283 7413 7036 3 644 243 103 0 0 chr4 7783604 7783643 -147846477 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 3 644 423 0 0 0 chr4 7783990 7784037 -147846083 + (ATAGG)n Simple_repeat Simple_repeat 3 49 0 3 644 1878 168 57 36 chr4 7786042 7786426 -147843694 + ORR1B1 LTR MaLR 3 394 0 3 644 486 254 130 8 chr4 7788216 7788358 -147841762 + B3A SINE B2 5 157 -41 3 644 513 47 0 0 chr4 7788358 7788422 -147841698 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 644 275 314 79 28 chr4 7788422 7788456 -147841664 + B2_Mm2 SINE B2 150 189 -6 3 644 552 214 45 0 chr4 7789013 7789125 -147840995 - Tigger9a DNA Tigger -595 137 21 3 644 198 143 0 0 chr4 7789184 7789219 -147840901 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 3 644 726 12 0 0 chr4 7789859 7789942 -147840178 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 644 360 0 0 0 chr4 7790187 7790227 -147839893 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 644 189 0 0 0 chr4 7790547 7790568 -147839552 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 644 4908 102 50 22 chr4 7791172 7792142 -147837978 - Lx3A LINE L1 -535 6446 5453 3 644 1138 94 0 0 chr4 7792168 7792327 -147837793 + Lx3A LINE L1 6429 6587 -394 3 644 677 93 0 9 chr4 7792327 7792436 -147837684 + Lx3A LINE L1 6869 6976 -5 3 644 22 56 0 0 chr4 7793433 7793469 -147836651 + AT_rich Low_complexity Low_complexity 1 36 0 3 644 301 236 73 28 chr4 7793652 7793761 -147836359 + MER53 DNA hAT 79 192 -1 3 644 428 351 51 38 chr4 7793860 7794017 -147836103 - RSINE1 SINE B4 -3 162 4 3 644 311 343 192 37 chr4 7794680 7795118 -147835002 - L2 LINE L2 -818 2601 2096 3 644 370 298 0 34 chr4 7795305 7795423 -147834697 - Tigger5 DNA MER2_type -2 2404 2291 3 644 432 306 155 19 chr4 7795419 7795632 -147834488 - Tigger5 DNA MER2_type -2164 242 1 3 644 498 196 0 0 chr4 7795777 7795879 -147834241 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 644 3946 30 7 0 chr4 7796289 7796752 -147833368 + L1Md_F2 LINE L1 6115 6580 -2 3 644 33746 45 1 4 chr4 7796755 7801977 -147828143 + L1Md_T LINE L1 288 5589 -297 3 644 8502 31 1 0 chr4 7801977 7802972 -147827148 + L1Md_T LINE L1 5590 6585 0 3 644 539 269 0 0 chr4 7803254 7803362 -147826758 + ID_B1 SINE B4 116 223 -1 3 644 280 342 368 46 chr4 7805053 7805338 -147824782 - MER67A LTR ERV1 -150 393 17 3 644 21 0 0 0 chr4 7805967 7805988 -147824132 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 26 30 0 0 chr4 7806285 7806318 -147823802 + AT_rich Low_complexity Low_complexity 1 33 0 3 644 4702 134 57 32 chr4 7806423 7807645 -147822475 + L1Md_T LINE L1 190 1425 -4458 3 644 20530 8 0 0 chr4 7807642 7810094 -147820026 - L1_Mm LINE L1 -1249 4634 2183 3 644 13689 17 0 0 chr4 7810090 7811741 -147818379 + L1Md_A LINE L1 3936 5586 -297 3 644 9034 4 0 0 chr4 7811741 7812737 -147817383 + L1Md_A LINE L1 5587 6582 0 3 644 33172 30 0 0 chr4 7812737 7816916 -147813204 + L1Md_T LINE L1 1408 5586 -297 3 644 8037 56 0 0 chr4 7816916 7817911 -147812209 + L1Md_T LINE L1 5587 6581 -1 3 644 455 0 0 18 chr4 7818150 7818206 -147811914 + (TTA)n Simple_repeat Simple_repeat 2 56 0 3 644 1294 88 16 0 chr4 7818206 7818399 -147811721 - L1Md_F2 LINE L1 -29 6553 6358 3 644 1577 267 111 16 chr4 7818714 7819202 -147810918 - RMER15 LTR ERVL 0 575 42 3 644 552 42 0 0 chr4 7819523 7819594 -147810526 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 644 498 108 0 0 chr4 7819608 7819682 -147810438 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 644 400 346 8 30 chr4 7819757 7819891 -147810229 - B1F SINE Alu -7 142 12 3 644 23 33 0 0 chr4 7821058 7821088 -147809032 + AT_rich Low_complexity Low_complexity 1 30 0 3 644 186 293 16 65 chr4 7823394 7823456 -147806664 + L3 LINE CR1 3917 3975 -514 3 644 308 291 25 41 chr4 7823671 7823793 -147806327 + ID_B1 SINE B4 89 208 -16 3 644 222 181 11 46 chr4 7823802 7823889 -147806231 + GA-rich Low_complexity Low_complexity 4 87 0 3 644 242 83 0 59 chr4 7825164 7825215 -147804905 + (A)n Simple_repeat Simple_repeat 1 48 0 3 644 395 274 18 36 chr4 7825231 7825341 -147804779 + B3A SINE B2 8 115 -83 3 644 2733 150 2 0 chr4 7825361 7825813 -147804307 - Lx5 LINE L1 -293 6757 6305 3 644 519 95 0 0 chr4 7827669 7827743 -147802377 + (T)n Simple_repeat Simple_repeat 1 74 0 3 644 24 0 0 0 chr4 7829572 7829596 -147800524 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 523 280 42 33 chr4 7829624 7829862 -147800258 + MIR SINE MIR 4 242 -26 3 644 512 73 12 0 chr4 7830340 7830422 -147799698 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 644 467 336 20 0 chr4 7830643 7830789 -147799331 + LTR33C LTR ERVL 10 158 -471 3 644 274 328 24 32 chr4 7831127 7831250 -147798870 + L2a LINE L2 3305 3426 0 3 644 6766 109 7 17 chr4 7834061 7835088 -147795032 - Lx2 LINE L1 0 6997 5981 3 644 351 0 0 0 chr4 7835268 7835307 -147794813 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 644 221 83 0 27 chr4 7836842 7836879 -147793241 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 644 5415 93 20 1 chr4 7836879 7837642 -147792478 - L1_Mus3 LINE L1 -16 6622 5846 3 644 219 229 0 0 chr4 7837717 7837765 -147792355 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 644 435 38 0 0 chr4 7838374 7838427 -147791693 + (TCTCCC)n Simple_repeat Simple_repeat 6 58 0 3 644 261 0 0 0 chr4 7838840 7838869 -147791251 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 644 275 279 101 0 chr4 7839226 7839310 -147790810 - PB1D10 SINE Alu -17 103 9 3 644 646 263 48 30 chr4 7841465 7841735 -147788385 + L1_Rod LINE L1 293 567 -6605 3 644 2058 219 42 48 chr4 7841778 7842545 -147787575 + L1_Rod LINE L1 3226 3987 -1860 3 644 1199 197 81 37 chr4 7842541 7842889 -147787231 + L1_Rod LINE L1 4625 4987 -860 3 644 1531 164 69 83 chr4 7842959 7843326 -147786794 - ORR1B1 LTR MaLR 0 394 1 3 644 298 184 66 0 chr4 7843326 7843402 -147786718 + Lx9 LINE L1 7564 7644 0 3 644 24 0 0 0 chr4 7843408 7843432 -147786688 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 257 302 28 19 chr4 7844083 7844191 -147785929 - Tigger5 DNA MER2_type -7 2399 2291 3 644 426 343 92 40 chr4 7844682 7844879 -147785241 + MLT1E1 LTR MaLR 434 644 -10 3 644 231 36 0 0 chr4 7845712 7845740 -147784380 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 644 608 329 114 40 chr4 7846084 7846582 -147783538 + L2 LINE L2 710 1244 -2175 3 644 2494 274 92 26 chr4 7846635 7846800 -147783320 + ORR1D2-int LTR MaLR 556 736 -634 3 644 4300 185 80 2 chr4 7846800 7847598 -147782522 - RMER13A LTR ERVK 0 860 1 3 644 2494 274 92 26 chr4 7847598 7848197 -147781923 + ORR1D2-int LTR MaLR 737 1370 0 3 644 720 327 22 35 chr4 7848199 7848430 -147781690 + ORR1D2 LTR MaLR 3 230 -140 3 644 266 280 33 120 chr4 7848631 7848781 -147781339 - RLTR43A LTR ERVK 0 364 228 3 644 274 304 121 22 chr4 7849004 7849327 -147780793 + L1MEg LINE L1 566 920 -5164 3 644 521 332 41 56 chr4 7849650 7849918 -147780202 + MTEb LTR MaLR 1 264 -115 3 644 230 268 10 20 chr4 7850678 7850709 -147779411 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 644 330 26 0 0 chr4 7850709 7850748 -147779372 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 644 230 268 10 20 chr4 7850748 7850815 -147779305 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 644 387 0 0 0 chr4 7851006 7851049 -147779071 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 644 3224 285 73 23 chr4 7851049 7852061 -147778059 + Lx6 LINE L1 6178 7231 -229 3 644 304 40 20 20 chr4 7852061 7852112 -147778008 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 644 3224 285 73 23 chr4 7852112 7852179 -147777941 + Lx6 LINE L1 7232 7313 -147 3 644 189 0 0 0 chr4 7852179 7852200 -147777920 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 644 3224 285 73 23 chr4 7852200 7852339 -147777781 + Lx6 LINE L1 7314 7458 -2 3 644 226 325 86 35 chr4 7852608 7852806 -147777314 - MER121 Unknown Unknown -155 257 50 3 644 1059 123 23 6 chr4 7852831 7853002 -147777118 - RMER17D2 LTR ERVK -635 174 1 4 644 2098 106 3 15 chr4 7853002 7853327 -147776793 - Lx3_Mus LINE L1 -168 6841 6521 4 644 6455 90 31 14 chr4 7853301 7854917 -147775203 + Lx3_Mus LINE L1 4918 6564 -445 4 644 863 205 65 5 chr4 7854936 7855122 -147774998 + MTD LTR MaLR 208 404 -15 4 644 391 338 109 34 chr4 7855179 7855620 -147774500 + L1ME3 LINE L1 4753 5226 -920 4 644 1686 154 27 71 chr4 7855973 7856309 -147773811 - ORR1A4 LTR MaLR -8 321 1 4 644 4011 163 41 54 chr4 7856309 7857143 -147772977 - ORR1A4-int LTR MaLR 0 1963 1141 4 644 2805 92 16 28 chr4 7857143 7857569 -147772551 + BGLII LTR ERVK 1 421 0 4 644 5956 161 35 18 chr4 7857569 7858696 -147771424 - ORR1A4-int LTR MaLR -817 1146 1 4 644 1352 167 98 20 chr4 7858696 7859001 -147771119 - ORR1A4 LTR MaLR 0 329 1 4 644 539 319 116 40 chr4 7859359 7859764 -147770356 + L1ME3 LINE L1 5449 5884 -278 4 644 393 22 0 0 chr4 7860357 7860403 -147769717 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 644 182 381 77 34 chr4 7860678 7860887 -147769233 + L2 LINE L2 2200 2417 -1002 4 644 404 198 31 20 chr4 7860971 7861069 -147769051 + Lx4B LINE L1 6881 6979 -79 4 644 1860 175 26 0 chr4 7861070 7861373 -147768747 + RLTR25B LTR ERVK 1 311 -792 4 644 7140 55 8 0 chr4 7861373 7862388 -147767732 + L1_Mus1 LINE L1 5494 6516 -51 4 644 233 245 10 60 chr4 7862388 7862488 -147767632 + RLTR25B LTR ERVK 264 358 -670 4 80 12815 164 36 22 chr4 7862816 7864455 -147765665 + Lx3C LINE L1 802 2488 -3398 4 645 2927 49 58 15 chr4 7864455 7864849 -147765271 + RLTR10A LTR ERVK 1 411 0 4 645 12815 157 14 21 chr4 7864849 7866157 -147763963 + Lx3C LINE L1 2489 3775 -2111 4 645 3219 206 72 57 chr4 7866157 7866985 -147763135 - RMER13B LTR ERVK -65 843 3 4 645 2500 168 35 0 chr4 7866986 7867498 -147762622 + Lx3C LINE L1 3786 4315 -1562 4 645 799 50 0 0 chr4 7867499 7867598 -147762522 + B1_Mm SINE Alu 43 141 -6 4 645 6301 163 40 15 chr4 7867615 7869600 -147760520 + Lx3C LINE L1 4924 6972 -4 4 645 2746 184 108 42 chr4 7869609 7870246 -147759874 + RLTR25B LTR ERVK 350 1028 0 4 645 21 36 0 0 chr4 7870314 7870342 -147759778 + AT_rich Low_complexity Low_complexity 1 28 0 4 645 1101 88 0 26 chr4 7870821 7870972 -147759148 + B1_Mus2 SINE Alu 1 147 0 4 645 180 0 0 0 chr4 7872190 7872210 -147757910 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 645 3823 51 22 14 chr4 7872738 7872982 -147757138 + RLTR1C LTR ERV1 1 245 -258 4 645 2307 91 13 3 chr4 7872982 7873290 -147756830 - RLTR10E LTR ERVK 0 311 1 4 645 3823 51 22 14 chr4 7873290 7873544 -147756576 + RLTR1C LTR ERV1 246 503 0 4 645 410 284 14 0 chr4 7874024 7874172 -147755948 + Lx9 LINE L1 7323 7472 -172 4 645 414 0 0 0 chr4 7874211 7874257 -147755863 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 645 24 0 0 0 chr4 7874394 7874418 -147755702 + AT_rich Low_complexity Low_complexity 1 24 0 4 645 216 0 0 0 chr4 7874942 7874966 -147755154 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 645 289 316 26 0 chr4 7875968 7876044 -147754076 + B1F SINE Alu 21 98 -51 4 645 1352 243 44 47 chr4 7876343 7876892 -147753228 - L1_Rod LINE L1 -2270 3577 3031 4 645 6139 188 63 24 chr4 7876920 7877327 -147752793 - Lx5 LINE L1 0 7050 6612 4 645 198 0 0 0 chr4 7877327 7877349 -147752771 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 4 645 6139 188 49 45 chr4 7877349 7878627 -147751493 - Lx5 LINE L1 -439 6611 5307 4 645 271 186 9 134 chr4 7878627 7878739 -147751381 - RCHARR1 DNA MER1_type -131 843 746 4 645 3316 63 0 0 chr4 7878742 7879153 -147750967 - L1_Mus1 LINE L1 0 6567 6157 4 645 4745 189 14 99 chr4 7879153 7879751 -147750369 - Lx5 LINE L1 -583 5303 4707 4 645 295 239 18 0 chr4 7879873 7879982 -147750138 + Lx9 LINE L1 7532 7642 -2 4 645 297 281 0 43 chr4 7880304 7880397 -147749723 + CT-rich Low_complexity Low_complexity 6 94 0 4 645 22 56 0 0 chr4 7880468 7880504 -147749616 + AT_rich Low_complexity Low_complexity 1 36 0 4 645 333 300 78 12 chr4 7880518 7880761 -147749359 + L1MB8 LINE L1 5715 5973 -205 4 645 260 314 29 0 chr4 7881960 7882065 -147748055 - MER2 DNA MER2_type -156 189 82 4 645 238 356 16 73 chr4 7883385 7883509 -147746611 + MLT1G LTR MaLR 65 181 -410 4 645 735 182 0 0 chr4 7884143 7884313 -147745807 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 4 645 7472 56 1 4 chr4 7884777 7886173 -147743947 + L1Md_F2 LINE L1 5172 6562 -20 4 645 400 333 19 0 chr4 7886618 7886723 -147743397 + B3A SINE B2 2 108 -90 4 645 212 387 131 0 chr4 7886723 7886753 -147743367 + RSINE1 SINE B4 3 155 -10 4 645 396 0 0 0 chr4 7887030 7887074 -147743046 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 645 298 237 67 29 chr4 7887507 7887687 -147742433 - L1ME1 LINE L1 -10 6169 5992 4 645 327 25 0 0 chr4 7888155 7888195 -147741925 + (T)n Simple_repeat Simple_repeat 1 40 0 4 645 1098 15 0 0 chr4 7888195 7888329 -147741791 - B1_Mm SINE Alu 0 147 14 4 645 320 304 64 29 chr4 7889634 7889796 -147740324 - MIRb SINE MIR -100 162 2 4 645 6806 72 26 4 chr4 7889924 7890954 -147739166 - L1_Mus2 LINE L1 0 6566 5510 4 645 1098 239 76 29 chr4 7890973 7891249 -147738871 - MTD LTR MaLR -37 382 94 4 645 16366 94 3 4 chr4 7893226 7896415 -147733705 + L1_Mus2 LINE L1 3383 6566 0 4 645 198 71 0 0 chr4 7896589 7896617 -147733503 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 645 931 272 101 4 chr4 7896898 7897156 -147732964 + B4A SINE B4 8 290 -2 4 645 308 24 24 0 chr4 7897170 7897211 -147732909 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 645 411 21 0 0 chr4 7897211 7897258 -147732862 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 645 212 100 0 24 chr4 7897258 7897299 -147732821 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 645 635 250 30 40 chr4 7898150 7898350 -147731770 + B3A SINE B2 1 198 0 4 645 462 79 0 0 chr4 7899419 7899482 -147730638 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 645 3949 215 64 51 chr4 7899577 7901066 -147729054 - Lx5 LINE L1 -200 6850 5350 4 645 5662 99 25 6 chr4 7901063 7901920 -147728200 - Lx LINE L1 -1 6653 5781 4 645 331 279 0 103 chr4 7901920 7901953 -147728167 - RLTR25A LTR ERVK -478 625 589 4 645 575 27 0 14 chr4 7901961 7902035 -147728085 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 645 331 279 0 103 chr4 7902035 7902109 -147728011 - RLTR25A LTR ERVK -515 588 522 4 645 423 245 25 101 chr4 7902042 7902201 -147727919 - MT2B LTR ERVL -337 264 118 4 645 943 79 0 16 chr4 7902109 7902155 -147727965 - B1_Mus1 SINE Alu -28 120 1 4 645 1626 191 14 16 chr4 7902201 7902568 -147727552 - Lx5 LINE L1 -569 5308 4943 4 645 21 0 0 0 chr4 7902576 7902597 -147727523 + AT_rich Low_complexity Low_complexity 1 21 0 4 645 1129 296 58 10 chr4 7903665 7903958 -147726162 - MTEa LTR MaLR 0 379 73 4 645 224 30 0 29 chr4 7904023 7904057 -147726063 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 645 723 83 0 0 chr4 7905619 7905727 -147724393 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 645 403 292 50 28 chr4 7908097 7908238 -147721882 - B1F SINE Alu -3 146 3 4 645 1587 64 0 5 chr4 7908464 7908683 -147721437 - L1_Mus3 LINE L1 -369 5514 5297 4 645 7059 95 10 7 chr4 7908681 7909777 -147720343 + L1_Mus3 LINE L1 5534 6633 -5 4 645 867 70 0 0 chr4 7909787 7909902 -147720218 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 4 645 944 138 130 60 chr4 7910092 7910292 -147719828 + MTC LTR MaLR 208 421 0 4 645 233 297 0 111 chr4 7910292 7910360 -147719760 + B4A SINE B4 233 292 0 4 645 333 316 42 0 chr4 7910701 7910796 -147719324 + PB1D10 SINE Alu 12 110 -7 4 645 1074 38 0 0 chr4 7911587 7911718 -147718402 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 4 645 345 82 0 0 chr4 7911833 7911882 -147718238 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 645 2529 63 3 0 chr4 7912948 7913280 -147716840 - L1Md_F2 LINE L1 -270 6312 5980 4 645 240 364 81 52 chr4 7915348 7915522 -147714598 - MLT1H2 LTR MaLR -61 428 250 4 645 286 260 96 0 chr4 7915985 7916058 -147714062 + ID2 SINE ID 1 80 -3 4 645 1022 90 7 27 chr4 7916451 7916600 -147713520 + B1_Mus1 SINE Alu 1 146 -2 4 645 947 144 0 6 chr4 7918321 7918489 -147711631 + (GGGA)n Simple_repeat Simple_repeat 4 170 0 4 645 451 43 14 14 chr4 7918634 7918705 -147711415 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 4 645 1673 325 40 47 chr4 7921505 7922307 -147707813 + Lx8 LINE L1 6528 7323 -150 4 645 255 79 0 0 chr4 7922312 7922350 -147707770 + (T)n Simple_repeat Simple_repeat 1 38 0 4 645 891 146 0 19 chr4 7922489 7922643 -147707477 - URR1A DNA MER1_type -5 221 71 4 645 295 137 27 0 chr4 7922864 7922937 -147707183 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 645 226 155 17 33 chr4 7922951 7923011 -147707109 + GA-rich Low_complexity Low_complexity 3 61 0 4 645 1076 93 76 6 chr4 7923362 7923534 -147706586 + B2_Mm2 SINE B2 4 187 -8 4 645 2588 44 0 0 chr4 7925687 7926008 -147704112 + L1Md_F2 LINE L1 5266 5586 -297 4 645 7839 61 3 2 chr4 7926008 7927003 -147703117 + L1Md_F2 LINE L1 5587 6582 0 4 645 618 288 29 56 chr4 7927005 7927284 -147702836 + RLTR12B LTR ERVK 57 275 -302 4 645 314 371 28 14 chr4 7927688 7927900 -147702220 + MLT1B LTR MaLR 198 408 0 4 645 1163 226 119 44 chr4 7928061 7928650 -147701470 + L1_Rod LINE L1 3026 3658 -2189 4 645 3100 54 10 5 chr4 7928742 7929136 -147700984 + MTA_Mm LTR MaLR 1 396 0 4 645 291 370 31 0 chr4 7929605 7929732 -147700388 + MER94 DNA AcHobo 3 133 -1 4 645 4531 244 48 30 chr4 7929904 7931143 -147698977 + Lx7 LINE L1 6120 7380 -316 4 645 23 0 0 0 chr4 7931147 7931170 -147698950 + AT_rich Low_complexity Low_complexity 1 23 0 4 645 227 308 103 0 chr4 7931667 7931774 -147698346 - L1MEf LINE L1 -3993 2407 2290 4 645 454 314 85 22 chr4 7932038 7932414 -147697706 - L1MEf LINE L1 -4451 1949 1552 4 645 601 256 78 5 chr4 7932417 7932621 -147697499 + MER20 DNA MER1_type 1 219 0 4 645 330 282 107 26 chr4 7932737 7932964 -147697156 - L1MEf LINE L1 -5015 1400 1161 4 645 349 248 141 0 chr4 7933131 7933280 -147696840 + L1MA6 LINE L1 6026 6195 -105 4 645 411 21 0 0 chr4 7933442 7933490 -147696630 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 645 262 304 43 0 chr4 7933495 7933564 -147696556 - ID_B1 SINE B4 -130 94 23 4 645 273 295 33 0 chr4 7933504 7933565 -147696555 - ID4_ SINE ID 0 83 21 4 645 513 299 44 25 chr4 7933647 7934008 -147696112 - L1MA4 LINE L1 -263 6037 5678 4 645 2602 96 111 0 chr4 7934022 7934417 -147695703 + BGLII_B LTR ERVK 3 441 0 5 645 3599 190 84 103 chr4 7934417 7934770 -147695350 + L1_Mur3 LINE L1 1816 2079 -3801 5 645 267 31 0 0 chr4 7934770 7934802 -147695318 + (CCA)n Simple_repeat Simple_repeat 1 32 0 5 645 3599 190 84 103 chr4 7934802 7935749 -147694371 + L1_Mur3 LINE L1 2080 3091 -2789 5 645 381 97 16 0 chr4 7935749 7935811 -147694309 - BGLII_B LTR ERVK -378 63 1 5 645 2768 156 61 25 chr4 7935811 7936448 -147693672 - MYSERV16_I-int LTR ERVK 0 2326 1667 5 645 1509 196 0 3 chr4 7936441 7936733 -147693387 - MYSERV6-int LTR ERVK -5978 2981 2691 5 645 1098 274 53 9 chr4 7936727 7937158 -147692962 - MYSERV6-int LTR ERVK -6991 1968 1519 5 645 501 325 108 0 chr4 7937181 7937430 -147692690 - MYSERV6-int LTR ERVK -7485 1474 1199 5 645 228 35 0 0 chr4 7937443 7937472 -147692648 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 645 1181 310 24 0 chr4 7939873 7940295 -147689825 - MYSERV6-int LTR ERVK -7775 1184 753 5 645 2491 164 52 12 chr4 7940295 7940986 -147689134 - L1_Mur3 LINE L1 -4063 1817 1097 5 645 260 357 102 28 chr4 7941002 7941228 -147688892 - MIR SINE MIR -5 257 24 5 645 189 0 0 0 chr4 7941354 7941375 -147688745 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 645 1329 82 22 0 chr4 7941501 7941683 -147688437 + B2_Mm2 SINE B2 2 187 -8 5 645 1281 134 0 9 chr4 7941683 7941894 -147688226 + L1_Mur3 LINE L1 3363 3571 -2309 5 645 337 138 0 0 chr4 7941894 7941952 -147688168 + L1_Mur2 LINE L1 3513 3570 -2307 5 645 419 94 0 0 chr4 7941946 7942010 -147688110 + L1_Mur3 LINE L1 3508 3571 -2309 5 645 347 138 0 0 chr4 7942010 7942068 -147688052 + L1_Mur2 LINE L1 3513 3570 -2307 5 645 1790 155 26 0 chr4 7942062 7942404 -147687716 + L1_Mur3 LINE L1 3508 3858 -2022 5 645 281 192 31 0 chr4 7942523 7942591 -147687529 + Lx5 LINE L1 6290 6352 -698 5 645 1730 292 41 13 chr4 7942590 7943354 -147686766 - L1_Mur3 LINE L1 -3515 2365 1581 5 645 746 314 28 4 chr4 7943356 7943609 -147686511 - Lx8 LINE L1 -928 6545 6287 5 645 232 196 18 0 chr4 7943635 7943691 -147686429 + L1_Mur3 LINE L1 1512 1568 -4312 5 645 231 275 12 0 chr4 7943721 7943801 -147686319 + Lx8 LINE L1 6872 6952 -521 5 645 730 323 6 33 chr4 7943853 7944186 -147685934 + Lx8 LINE L1 6969 7292 -181 5 645 5762 179 63 22 chr4 7944319 7945968 -147684152 + Lx5 LINE L1 5213 6932 -118 5 645 3644 32 2 80 chr4 7945968 7946483 -147683637 - IAPLTR2_Mm LTR ERVK 0 475 1 5 645 5762 197 82 29 chr4 7946483 7946584 -147683536 + Lx5 LINE L1 6933 7048 -2 5 645 184 328 43 58 chr4 7946939 7947078 -147683042 - L2a LINE L2 -46 3380 3244 5 645 234 301 80 57 chr4 7947095 7947271 -147682849 - L2a LINE L2 -1665 1754 1575 5 645 629 265 91 5 chr4 7947984 7948181 -147681939 - B3 SINE B2 -1 215 2 5 645 374 143 13 0 chr4 7948196 7948273 -147681847 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 645 282 247 110 0 chr4 7948313 7948459 -147681661 + L1MA6 LINE L1 6025 6186 -114 5 645 613 302 29 17 chr4 7948560 7948735 -147681385 + B3 SINE B2 3 179 -37 5 645 27 49 0 0 chr4 7948736 7948777 -147681343 + AT_rich Low_complexity Low_complexity 1 41 0 5 645 189 74 0 0 chr4 7949982 7950009 -147680111 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 645 447 19 0 0 chr4 7950541 7950593 -147679527 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 645 613 352 63 94 chr4 7951502 7951834 -147678286 + MLT2B1 LTR ERVL 3 330 -190 5 645 545 267 88 35 chr4 7951834 7952005 -147678115 - B3A SINE B2 -16 182 3 5 645 613 352 63 94 chr4 7952005 7952149 -147677971 + MLT2B1 LTR ERVL 331 464 -56 5 645 283 399 0 87 chr4 7952230 7952403 -147677717 + RSINE1 SINE B4 4 161 -4 5 645 2911 89 17 0 chr4 7953443 7953847 -147676273 - RLTR9F LTR ERVK -4 411 1 5 645 211 72 23 23 chr4 7953915 7953958 -147676162 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 645 464 295 134 50 chr4 7954038 7954233 -147675887 - MTD LTR MaLR -143 276 56 5 645 1951 159 8 6 chr4 7954233 7954588 -147675532 - RLTR15 LTR ERVK -3 356 1 5 645 464 295 134 50 chr4 7954588 7954631 -147675489 - MTD LTR MaLR -364 55 18 5 645 27 0 0 0 chr4 7955654 7955681 -147674439 + AT_rich Low_complexity Low_complexity 1 27 0 5 645 836 137 131 0 chr4 7955817 7955970 -147674150 + RLTR47_MM LTR ERV1 355 527 -5 5 645 319 288 26 26 chr4 7956365 7956479 -147673641 + MMERGLN-int LTR ERV1 587 700 -6856 5 645 1184 305 69 66 chr4 7956989 7958253 -147671867 + MMERGLN-int LTR ERV1 1188 2420 -5136 5 645 320 332 42 63 chr4 7958300 7958619 -147671501 + MuRRS4-int LTR ERV1 4035 4419 -3359 5 645 1837 284 40 9 chr4 7958949 7959744 -147670376 + MuRRS4-int LTR ERV1 3536 4025 -1038 5 645 2194 95 131 10 chr4 7960580 7960963 -147669157 + RLTR47_MM LTR ERV1 1 429 -103 5 645 5325 110 49 4 chr4 7961382 7962197 -147667923 - Lx2A1 LINE L1 -5 7003 6152 5 645 7384 162 28 23 chr4 7962205 7963686 -147666434 - L1_Mm LINE L1 -106 5777 4290 5 645 3345 133 31 15 chr4 7963686 7964298 -147665822 + L1_Mur2 LINE L1 3657 4278 -1599 5 645 1505 172 64 53 chr4 7964298 7964655 -147665465 - RMER6C LTR ERVK -2 688 328 5 645 196 91 22 22 chr4 7964670 7964680 -147665440 + (CAACT)n Simple_repeat Simple_repeat 2 11 0 5 645 1868 122 28 22 chr4 7964680 7965000 -147665120 + RLTRETN_Mm LTR ERVK 1 322 0 5 645 196 91 22 22 chr4 7965000 7965034 -147665086 + (CAACT)n Simple_repeat Simple_repeat 2 36 0 5 645 234 0 0 0 chr4 7965395 7965421 -147664699 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 645 608 328 100 46 chr4 7965456 7965785 -147664335 - MLT1A0 LTR MaLR -15 350 4 5 645 457 305 42 7 chr4 7967224 7967366 -147662754 - MLT1A LTR MaLR 0 374 228 5 645 1760 182 32 9 chr4 7967892 7968208 -147661912 - RMER17A2 LTR ERVK -11 895 573 5 645 2092 127 57 80 chr4 7968208 7968610 -147661510 - RLTR9C LTR ERVK 0 393 1 5 645 25 0 0 0 chr4 7968620 7968645 -147661475 + AT_rich Low_complexity Low_complexity 1 25 0 5 645 336 100 0 0 chr4 7968645 7968695 -147661425 - MMETn-int LTR ERVK -24 7382 7333 5 645 1109 193 27 26 chr4 7968915 7969263 -147660857 - MMETn-int LTR ERVK -984 6422 6127 5 645 3466 197 29 64 chr4 7969231 7970493 -147659627 - MMETn-int LTR ERVK -1998 3408 2356 5 645 250 321 155 35 chr4 7970510 7970768 -147659352 - MER110A LTR ERV1 -143 325 37 5 645 30019 103 15 3 chr4 7971606 7977754 -147652366 + L1_Mus1 LINE L1 380 6567 0 5 645 908 221 103 114 chr4 7977885 7978220 -147651900 + MT2A LTR ERVL 5 465 -136 5 645 414 0 0 0 chr4 7979042 7979088 -147651032 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 645 1223 120 5 15 chr4 7979854 7979889 -147650231 - B2_Mm1t SINE B2 0 193 161 5 645 348 83 0 0 chr4 7979889 7979937 -147650183 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 645 1223 120 5 15 chr4 7979937 7980096 -147650024 - B2_Mm1t SINE B2 -33 160 1 5 645 561 164 0 260 chr4 7980211 7980392 -147649728 - B1_Mur3 SINE Alu -7 142 9 5 645 856 299 21 8 chr4 7981445 7981681 -147648439 - B4 SINE B4 -2 290 52 5 645 506 344 96 34 chr4 7982888 7983295 -147646825 + Kanga1c DNA Tc2 269 700 -29 5 645 464 206 158 8 chr4 7983424 7983551 -147646569 - RMER15 LTR ERVL 0 575 430 5 645 698 231 10 88 chr4 7983552 7983756 -147646364 - RMER15 LTR ERVL -359 216 29 5 645 663 194 48 7 chr4 7984081 7984226 -147645894 - URR1A DNA MER1_type -1 225 75 5 645 290 256 146 0 chr4 7984313 7984395 -147645725 + MER74A LTR ERVL 234 327 -231 5 645 1186 301 206 26 chr4 7984454 7985149 -147644971 - RMER13A LTR ERVK -39 821 2 5 645 306 311 62 52 chr4 7985149 7985341 -147644779 + MER74A LTR ERVL 325 518 -40 5 645 369 0 0 0 chr4 7986358 7986399 -147643721 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 645 423 0 0 0 chr4 7986399 7986445 -147643675 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 645 225 185 55 18 chr4 7986580 7986635 -147643485 + MLT1A1 LTR MaLR 336 392 -16 5 645 619 324 65 76 chr4 7987383 7987674 -147642446 + B4A SINE B4 5 292 0 5 645 216 67 0 0 chr4 7987696 7987726 -147642394 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 645 432 0 0 0 chr4 7988192 7988240 -147641880 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 645 180 0 0 0 chr4 7988651 7988671 -147641449 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 645 441 147 0 0 chr4 7988693 7988761 -147641359 - B1_Mur3 SINE Alu -35 114 47 5 645 195 69 0 0 chr4 7989137 7989166 -147640954 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 645 486 249 97 12 chr4 7989504 7989637 -147640483 - B3 SINE B2 -47 146 6 5 645 228 289 8 136 chr4 7989715 7989734 -147640386 + MT2B2 LTR ERVL 151 152 -432 5 645 424 266 17 26 chr4 7989734 7989850 -147640270 + PB1D10 SINE Alu 2 116 -1 5 645 1562 212 65 44 chr4 7990071 7990455 -147639665 + ORR1B1 LTR MaLR 3 394 0 5 645 1948 124 88 15 chr4 7990460 7990803 -147639317 - RLTR9A LTR ERVK 0 368 1 5 645 1792 172 6 27 chr4 7992448 7992729 -147637391 + RMER17C LTR ERVK 20 441 -517 5 645 6466 52 10 4 chr4 7992729 7993532 -147636588 - RLTR13C2 LTR ERVK 0 808 1 5 645 1792 169 2 27 chr4 7993532 7993704 -147636416 + RMER17C LTR ERVK 243 410 0 5 645 235 213 0 0 chr4 7993704 7993765 -147636355 + (ATGGTG)n Simple_repeat Simple_repeat 3 63 0 5 645 228 173 54 71 chr4 7993771 7993827 -147636293 - PB1D10 SINE Alu 0 117 63 5 645 599 310 0 0 chr4 7993777 7993919 -147636201 - ID_B1 SINE B4 -2 222 81 5 645 333 197 0 0 chr4 7994043 7994114 -147636006 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 645 1900 287 117 12 chr4 7994171 7994925 -147635195 - Lx8 LINE L1 -181 7292 6460 5 80 252 0 0 0 chr4 7995382 7995410 -147634710 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 646 498 285 124 50 chr4 7995549 7995767 -147634353 + B4 SINE B4 55 288 -4 5 646 323 222 12 0 chr4 7995919 7996000 -147634120 + L1MA5 LINE L1 6208 6289 -11 5 646 391 274 0 0 chr4 7996455 7996539 -147633581 - RSINE1 SINE B4 -79 86 3 5 646 354 281 9 37 chr4 7996567 7996674 -147633446 + PB1D10 SINE Alu 2 105 -12 5 646 450 288 9 0 chr4 7996973 7997084 -147633036 - B1F SINE Alu -19 130 19 5 646 546 16 0 0 chr4 7997288 7997351 -147632769 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 646 7326 93 32 7 chr4 7997360 7998397 -147631723 - Lx3_Mus LINE L1 -3 7006 5944 5 646 231 315 22 11 chr4 7998397 7998487 -147631633 + L1M5 LINE L1 5596 5686 -758 5 646 366 300 35 25 chr4 7999590 7999720 -147630400 - MIRc SINE MIR -101 175 31 5 646 349 106 43 43 chr4 7999929 7999998 -147630122 - RLTR24 LTR ERV1 0 529 461 5 646 2042 159 108 21 chr4 8000000 8000351 -147629769 - RLTR24 LTR ERV1 -67 462 75 1 646 4808 143 94 18 chr4 8000351 8000865 -147629255 - RMER17A2 LTR ERVK 0 906 355 2 646 1018 23 8 8 chr4 8000865 8000995 -147629125 + (GGAGA)n Simple_repeat Simple_repeat 1 130 0 3 646 4808 143 94 18 chr4 8000995 8001322 -147628798 - RMER17A2 LTR ERVK -552 354 1 2 646 2042 159 108 21 chr4 8001322 8001395 -147628725 - RLTR24 LTR ERV1 -455 74 1 1 646 517 377 68 16 chr4 8001438 8001686 -147628434 + B4 SINE B4 16 276 -16 4 646 1672 216 50 80 chr4 8001880 8002303 -147627817 - MTD LTR MaLR -9 410 1 5 646 475 219 49 79 chr4 8002587 8002751 -147627369 - RLTR14 LTR ERV1 0 382 224 6 646 378 392 7 0 chr4 8003038 8003191 -147626929 - Lx8 LINE L1 -213 7260 7107 7 646 281 230 40 0 chr4 8003221 8003295 -147626825 - Lx9 LINE L1 0 7644 7568 8 646 424 204 33 22 chr4 8003393 8003483 -147626637 + Lx9 LINE L1 7191 7281 -363 9 646 1212 269 32 29 chr4 8003818 8004097 -147626023 + B4A SINE B4 7 286 -6 1 646 210 387 8 16 chr4 8006092 8006213 -147623907 + MIRc SINE MIR 149 268 0 1 646 183 146 0 0 chr4 8006310 8006351 -147623769 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 646 308 133 17 0 chr4 8006350 8006410 -147623710 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 646 557 319 25 12 chr4 8007985 8008147 -147621973 + B3 SINE B2 1 164 -52 1 646 351 0 0 0 chr4 8008160 8008199 -147621921 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 646 326 206 28 0 chr4 8008206 8008313 -147621807 + (TA)n Simple_repeat Simple_repeat 1 110 0 1 646 315 0 0 0 chr4 8008320 8008355 -147621765 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 646 1037 196 103 50 chr4 8008951 8009252 -147620868 - L1_Mur3 LINE L1 -374 5506 5190 1 646 238 255 0 0 chr4 8009265 8009316 -147620804 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 646 840 231 68 75 chr4 8009316 8009611 -147620509 - MT2B LTR ERVL -41 560 268 2 646 1970 101 3 18 chr4 8009633 8009915 -147620205 + L1Md_F2 LINE L1 6294 6571 -11 2 646 792 158 75 27 chr4 8009934 8010122 -147619998 - RLTR31_Mur LTR ERVK -105 448 252 2 646 268 111 0 36 chr4 8010124 8010180 -147619940 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 646 1203 154 98 173 chr4 8010185 8010584 -147619536 - RMER6C LTR ERVK -298 392 24 2 646 318 87 0 0 chr4 8010635 8010681 -147619439 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 646 293 188 28 103 chr4 8010736 8010843 -147619277 + L1MB1 LINE L1 5709 5807 -361 2 646 186 103 0 0 chr4 8010852 8010881 -147619239 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 646 450 233 16 28 chr4 8011274 8011444 -147618676 + L1MB1 LINE L1 5836 5996 -316 2 646 27 0 0 0 chr4 8011693 8011720 -147618400 + AT_rich Low_complexity Low_complexity 1 27 0 2 646 1316 268 20 90 chr4 8014043 8014543 -147615577 + ORR1B1 LTR MaLR 20 394 0 2 646 314 248 230 15 chr4 8014554 8014689 -147615431 + MTD LTR MaLR 192 355 -64 3 646 465 304 19 75 chr4 8015528 8015688 -147614432 + B4A SINE B4 1 151 -141 3 646 396 0 0 0 chr4 8015782 8015826 -147614294 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 646 1337 99 20 35 chr4 8016847 8017045 -147613075 + B2_Mm2 SINE B2 1 195 0 3 646 1267 159 98 39 chr4 8017283 8017538 -147612582 + MT2B LTR ERVL 1 270 -331 3 646 6212 149 18 33 chr4 8017357 8017811 -147612309 + ORR1A4-int LTR MaLR 653 1107 -856 3 646 396 59 0 0 chr4 8017811 8017862 -147612258 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 3 646 6212 152 28 38 chr4 8017862 8018668 -147611452 + ORR1A4-int LTR MaLR 1013 1771 -192 3 646 2920 157 83 35 chr4 8018668 8019210 -147610910 + RLTR20D LTR ERVK 1 568 0 3 646 1120 106 6 0 chr4 8019210 8019371 -147610749 + ORR1A4-int LTR MaLR 1802 1963 0 3 646 931 133 10 126 chr4 8019371 8019553 -147610567 + ORR1A4 LTR MaLR 1 159 -170 3 646 408 191 81 35 chr4 8019553 8019640 -147610480 + RLTR9F LTR ERVK 1 91 -324 3 646 8982 141 4 20 chr4 8019641 8021164 -147608956 + ETnERV2-int LTR ERVK 4972 6240 -1166 3 646 446 99 28 14 chr4 8021382 8021454 -147608666 + ETnERV2-int LTR ERVK 7332 7404 -2 3 646 3096 86 12 5 chr4 8021455 8021863 -147608257 + RLTR9F LTR ERVK 1 411 -4 3 646 1250 84 0 0 chr4 8021864 8022030 -147608090 + ORR1A4 LTR MaLR 155 320 -9 4 646 24 32 0 0 chr4 8022357 8022388 -147607732 + AT_rich Low_complexity Low_complexity 1 31 0 4 646 305 280 83 25 chr4 8022618 8022739 -147607381 + ORR1E LTR MaLR 8 135 -224 4 646 250 274 92 35 chr4 8022885 8022972 -147607148 + ORR1E LTR MaLR 278 369 -10 4 646 283 290 135 26 chr4 8023800 8024140 -147605980 + L1MEf LINE L1 765 1141 -5059 4 646 1102 184 47 24 chr4 8024285 8024496 -147605624 + B3 SINE B2 1 216 0 4 646 29 0 0 0 chr4 8024521 8024550 -147605570 + AT_rich Low_complexity Low_complexity 1 29 0 4 646 261 240 0 0 chr4 8024592 8024642 -147605478 - B3A SINE B2 -133 65 16 4 646 295 265 101 87 chr4 8025037 8025186 -147604934 + MLT1D LTR MaLR 270 420 -85 4 646 370 252 27 0 chr4 8025502 8025613 -147604507 + MLT1D LTR MaLR 392 505 0 4 646 258 32 0 0 chr4 8025849 8025880 -147604240 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 646 236 111 0 22 chr4 8025880 8025926 -147604194 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 646 26 64 0 0 chr4 8026252 8026299 -147603821 + AT_rich Low_complexity Low_complexity 1 47 0 5 646 225 0 0 0 chr4 8026349 8026374 -147603746 + (T)n Simple_repeat Simple_repeat 1 25 0 5 646 1229 48 0 13 chr4 8026374 8026523 -147603597 - B1_Mus2 SINE Alu 0 147 1 5 646 560 243 67 14 chr4 8027201 8027410 -147602710 - L1MC3 LINE L1 -24 7761 7542 5 646 995 240 31 75 chr4 8027439 8027688 -147602432 - B4A SINE B4 -12 280 42 5 646 3580 33 5 0 chr4 8027688 8028082 -147602038 - MTA_Mm LTR MaLR 0 396 1 5 646 995 240 31 75 chr4 8028082 8028125 -147601995 - B4A SINE B4 -251 41 1 5 646 183 263 48 95 chr4 8028795 8028858 -147601262 - MER5A DNA MER1_type -52 137 78 5 646 626 180 25 12 chr4 8029034 8029197 -147600923 + CT-rich Low_complexity Low_complexity 4 168 0 5 646 1651 189 67 25 chr4 8029807 8030007 -147600113 - ORR1D1 LTR MaLR 0 374 163 5 646 312 91 0 0 chr4 8030007 8030051 -147600069 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 646 1651 189 67 25 chr4 8030051 8030209 -147599911 - ORR1D1 LTR MaLR -212 162 1 5 646 262 289 157 6 chr4 8030350 8030553 -147599567 - L1M4b LINE L1 -3647 3687 3491 6 646 493 269 7 37 chr4 8031401 8031536 -147598584 + B1_Mur4 SINE Alu 1 131 -18 6 646 269 167 0 53 chr4 8031521 8031578 -147598542 + B1_Mur3 SINE Alu 59 112 -37 6 646 217 205 0 43 chr4 8031582 8031628 -147598492 + B1_Mur3 SINE Alu 59 102 -47 6 646 384 202 41 31 chr4 8031628 8031725 -147598395 + B1_Mur3 SINE Alu 46 143 -6 6 646 765 172 13 13 chr4 8031727 8031951 -147598169 + GA-rich Low_complexity Low_complexity 1 224 0 6 646 767 247 151 32 chr4 8033271 8033522 -147596598 + RLTR28B LTR ERVL 1 281 -200 6 646 1233 153 170 132 chr4 8034023 8034393 -147595727 - ORR1C2 LTR MaLR 0 384 1 6 646 565 201 260 23 chr4 8035442 8035615 -147594505 + B3 SINE B2 1 214 -2 6 646 235 239 0 22 chr4 8035799 8035889 -147594231 + (CATA)n Simple_repeat Simple_repeat 3 90 0 6 646 1792 109 94 4 chr4 8036134 8036400 -147593720 - L1Md_F2 LINE L1 -1 6581 6292 7 646 201 132 0 0 chr4 8037091 8037129 -147592991 + (T)n Simple_repeat Simple_repeat 1 38 0 7 646 21 36 0 0 chr4 8037756 8037784 -147592336 + AT_rich Low_complexity Low_complexity 1 28 0 7 646 791 312 66 11 chr4 8037975 8038166 -147591954 - B4 SINE B4 -2 290 85 7 646 1185 136 55 98 chr4 8038166 8038402 -147591718 + URR1A DNA MER1_type 1 226 0 7 646 791 312 66 11 chr4 8038402 8038482 -147591638 - B4 SINE B4 -208 84 4 7 646 1079 243 63 30 chr4 8039917 8040188 -147589932 - B4A SINE B4 -5 287 8 7 646 318 239 7 175 chr4 8041725 8041862 -147588258 + B1_Mur4 SINE Alu 37 150 0 7 646 1143 66 0 28 chr4 8042398 8042539 -147587581 + B1_Mus1 SINE Alu 1 137 -11 7 646 186 43 0 0 chr4 8042539 8042562 -147587558 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 646 1273 35 7 0 chr4 8043020 8043165 -147586955 + B1_Mus2 SINE Alu 1 146 -1 7 646 551 85 12 0 chr4 8043530 8043612 -147586508 + (TGG)n Simple_repeat Simple_repeat 3 85 0 8 646 185 250 20 20 chr4 8043775 8043824 -147586296 + MIRm SINE MIR 222 270 -6 8 646 231 301 34 47 chr4 8043954 8044083 -147586037 - MIR SINE MIR -100 168 34 8 646 457 265 71 0 chr4 8044083 8044181 -147585939 + B4A SINE B4 1 105 -187 8 646 3590 70 19 82 chr4 8044181 8044695 -147585425 + RLTR45 LTR ERVK 1 482 0 8 646 4460 69 107 19 chr4 8044695 8045331 -147584789 + RLTR45-int LTR ERVK 1 692 -6552 8 646 1160 51 0 0 chr4 8045629 8045767 -147584353 + RLTR45-int LTR ERVK 681 818 -6426 8 646 11947 44 16 7 chr4 8046552 8048363 -147581757 + RLTR45-int LTR ERVK 1322 3212 -4032 8 646 3712 92 56 34 chr4 8048333 8048927 -147581193 + RLTR45-int LTR ERVK 3380 3986 -3258 8 646 17371 54 14 17 chr4 8048920 8051108 -147579012 + RLTR45-int LTR ERVK 5065 7244 0 8 646 3598 68 19 83 chr4 8051108 8051623 -147578497 + RLTR45 LTR ERVK 1 482 0 8 646 439 310 54 20 chr4 8051644 8051792 -147578328 + B4A SINE B4 134 286 -6 8 646 522 46 0 0 chr4 8051792 8051857 -147578263 + (TC)n Simple_repeat Simple_repeat 1 65 0 8 646 261 0 0 0 chr4 8051857 8051885 -147578235 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 646 386 302 59 82 chr4 8052144 8052414 -147577706 + B4A SINE B4 41 274 -18 8 646 202 162 27 0 chr4 8052428 8052465 -147577655 + (TAA)n Simple_repeat Simple_repeat 2 39 0 8 646 441 0 0 0 chr4 8052564 8052613 -147577507 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 646 5813 110 58 6 chr4 8053043 8053901 -147576219 + Lx2A LINE L1 6106 7008 0 9 646 459 0 0 0 chr4 8054313 8054364 -147575756 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 646 808 300 16 4 chr4 8055762 8056013 -147574107 - L1MA4 LINE L1 -386 5914 5661 9 646 1995 164 66 8 chr4 8056030 8056393 -147573727 + ORR1B1 LTR MaLR 3 386 -8 9 646 370 217 120 0 chr4 8056399 8056491 -147573629 - L1MA4 LINE L1 -664 5648 5546 9 646 939 259 112 11 chr4 8056492 8056800 -147573320 + ORR1D2 LTR MaLR 1 352 -7 9 646 432 252 54 36 chr4 8056909 8057166 -147572954 - L1MA4 LINE L1 -781 5383 5121 9 646 532 329 39 52 chr4 8057233 8057673 -147572447 - L1MA4 LINE L1 -1735 4408 3975 9 646 806 269 103 39 chr4 8057701 8058312 -147571808 - L1MA4 LINE L1 -2699 3444 2795 9 646 1034 269 74 112 chr4 8058381 8058774 -147571346 + MTE2a LTR MaLR 1 378 -1 9 646 681 243 72 0 chr4 8058803 8058955 -147571165 - B3 SINE B2 -53 163 1 9 646 3743 203 23 1 chr4 8059300 8060030 -147570090 - Lx5 LINE L1 -227 5653 4908 9 646 1521 202 70 11 chr4 8060020 8060375 -147569745 + Lx5 LINE L1 5672 6047 -1003 9 646 2357 86 122 14 chr4 8060412 8060764 -147569356 + RLTR10 LTR ERVK 1 390 0 9 646 2823 38 56 0 chr4 8060764 8061213 -147568907 + RLTR10-int LTR ERVK 302 848 -1139 9 646 8899 182 34 30 chr4 8061346 8063786 -147566334 + RLTR10-int LTR ERVK 986 5243 -1299 9 646 2500 69 119 11 chr4 8063788 8064140 -147565980 + RLTR10 LTR ERVK 1 390 0 9 646 1001 235 25 0 chr4 8064141 8064345 -147565775 + Lx5 LINE L1 6174 6382 -668 9 646 283 244 95 24 chr4 8064593 8064677 -147565443 + RMER20B LTR ERVK 330 419 -208 9 646 1881 281 15 19 chr4 8065051 8065715 -147564405 + Lx5 LINE L1 6454 6945 -105 9 646 338 316 122 4 chr4 8066009 8066377 -147563743 + L1M4b LINE L1 1960 2486 -4616 1 646 21 36 0 0 chr4 8066434 8066462 -147563658 + AT_rich Low_complexity Low_complexity 1 28 0 1 646 9320 73 24 55 chr4 8066462 8067852 -147562268 - Lx3_Mus LINE L1 -8 7001 5656 1 646 5823 84 39 9 chr4 8067851 8068656 -147561464 + Lx3_Mus LINE L1 4874 5702 -184 1 646 555 275 116 91 chr4 8068692 8069812 -147560308 + L1M4b LINE L1 2548 3830 -3176 1 646 231 281 116 35 chr4 8069863 8070062 -147560058 + L1M4b LINE L1 3912 4126 -2880 1 646 680 289 6 36 chr4 8070064 8070229 -147559891 + RSINE1 SINE B4 6 165 0 1 646 521 234 116 8 chr4 8070646 8070775 -147559345 + B1F2 SINE Alu 2 144 -5 1 646 834 61 0 9 chr4 8070791 8070907 -147559213 + B1_Mus2 SINE Alu 33 147 0 1 646 2557 194 83 65 chr4 8070948 8071626 -147558494 - RMER6C LTR ERVK 0 690 1 1 646 24 32 0 0 chr4 8072779 8072810 -147557310 + AT_rich Low_complexity Low_complexity 1 31 0 1 646 1441 197 174 22 chr4 8073825 8074146 -147555974 + ORR1D1 LTR MaLR 5 374 0 1 646 189 0 0 0 chr4 8074319 8074340 -147555780 + (CCA)n Simple_repeat Simple_repeat 3 23 0 1 646 600 244 135 8 chr4 8074554 8074814 -147555306 - L1MA8 LINE L1 -5 6286 5994 1 646 718 303 63 12 chr4 8075659 8075913 -147554207 + B4 SINE B4 5 271 -21 1 646 5433 120 101 24 chr4 8076643 8077532 -147552588 + RMER17B LTR ERVK 1 958 0 1 646 307 254 23 3 chr4 8077750 8077844 -147552276 + PB1D9 SINE Alu 9 103 -17 1 646 244 301 61 9 chr4 8078144 8078258 -147551862 - HAL1 LINE L1 -2116 391 272 1 646 272 319 67 12 chr4 8078302 8078467 -147551653 - HAL1 LINE L1 -2323 184 11 1 646 233 292 31 0 chr4 8078699 8078764 -147551356 + Tigger14a DNA MER2_type 81 147 -177 1 646 242 204 287 32 chr4 8079072 8079229 -147550891 + B3 SINE B2 1 197 -19 1 646 297 236 38 30 chr4 8079365 8079496 -147550624 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 646 235 196 49 82 chr4 8079496 8079557 -147550563 + B3 SINE B2 139 197 -19 1 646 314 271 0 0 chr4 8079557 8079627 -147550493 + B3 SINE B2 141 210 -6 1 646 459 0 0 0 chr4 8080159 8080210 -147549910 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 646 5111 148 79 27 chr4 8080970 8081334 -147548786 + RLTR13C1 LTR ERVK 1 383 -600 1 646 1217 75 0 0 chr4 8081334 8081480 -147548640 + B1_Mus2 SINE Alu 2 147 0 1 646 5111 148 79 27 chr4 8081480 8082049 -147548071 + RLTR13C1 LTR ERVK 384 982 -1 1 646 541 235 178 32 chr4 8082358 8082543 -147547577 + B3 SINE B2 5 216 0 1 646 23 0 0 0 chr4 8082545 8082568 -147547552 + AT_rich Low_complexity Low_complexity 1 23 0 1 646 394 240 59 20 chr4 8083597 8083726 -147546394 + MIR SINE MIR 76 212 -56 1 646 561 287 141 31 chr4 8085299 8085554 -147544566 + MLT1A0 LTR MaLR 5 287 -78 1 646 325 301 54 47 chr4 8086073 8086202 -147543918 - MER117 DNA MER1_type -44 153 24 1 646 216 0 0 0 chr4 8087165 8087189 -147542931 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 646 4201 91 13 43 chr4 8087369 8087921 -147542199 - L1_Mur1 LINE L1 -82 5804 5269 1 646 1300 34 0 7 chr4 8087921 8088067 -147542053 - B1_Mm SINE Alu -1 146 2 1 646 4201 91 13 43 chr4 8088067 8088137 -147541983 - L1_Mur1 LINE L1 -618 5268 5201 1 646 9128 94 13 1 chr4 8088138 8089338 -147540782 + Lx3_Mus LINE L1 5795 7009 0 1 646 789 122 32 0 chr4 8090262 8090385 -147539735 + MT2B LTR ERVL 5 131 -470 1 646 838 182 37 30 chr4 8091203 8091367 -147538753 + B3A SINE B2 34 198 0 1 646 348 43 0 0 chr4 8092622 8092668 -147537452 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 646 303 232 163 48 chr4 8092804 8092954 -147537166 + L1M5 LINE L1 5474 5635 -709 1 646 262 200 0 0 chr4 8093289 8093339 -147536781 + MLT2B5 LTR ERVL 1 50 -667 1 646 423 271 67 81 chr4 8093413 8093705 -147536415 + ORR1E LTR MaLR 63 363 -7 1 646 203 368 101 58 chr4 8094537 8095022 -147535098 + L2c LINE L2 2577 3082 -337 1 646 184 354 52 0 chr4 8095097 8095193 -147534927 + L2c LINE L2 3266 3366 -21 1 646 424 243 61 26 chr4 8097051 8097165 -147532955 + B3A SINE B2 2 119 -79 1 646 351 0 0 0 chr4 8097170 8097209 -147532911 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 646 22 35 0 0 chr4 8097209 8097238 -147532882 + AT_rich Low_complexity Low_complexity 1 29 0 1 646 648 320 11 0 chr4 8097666 8097844 -147532276 + B3A SINE B2 1 180 -18 1 646 588 192 44 28 chr4 8097863 8098020 -147532100 + L1_Mur3 LINE L1 5269 5428 -455 1 646 2483 207 86 14 chr4 8098012 8098581 -147531539 + Lx5 LINE L1 6441 7050 0 1 646 25 0 0 0 chr4 8098586 8098611 -147531509 + AT_rich Low_complexity Low_complexity 1 25 0 1 646 941 258 76 41 chr4 8098674 8099042 -147531078 + Lx8 LINE L1 5454 5834 -13 1 646 842 299 133 39 chr4 8099081 8099547 -147530573 + Lx8 LINE L1 6129 6638 -835 1 646 981 256 30 26 chr4 8099551 8099816 -147530304 + Lx8 LINE L1 6865 7130 -343 1 646 6536 37 0 0 chr4 8099821 8100588 -147529532 + L1Md_T LINE L1 5855 6582 0 1 646 688 301 23 72 chr4 8100625 8100929 -147529191 + Lx8 LINE L1 7169 7457 -16 1 646 504 59 0 0 chr4 8100940 8101008 -147529112 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 646 1289 73 6 0 chr4 8101051 8101229 -147528891 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 1 646 1410 56 0 0 chr4 8101242 8101422 -147528698 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 646 288 0 0 0 chr4 8101435 8101467 -147528653 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1 646 255 315 106 33 chr4 8102495 8102646 -147527474 + MIR SINE MIR 13 174 -88 1 646 239 279 18 88 chr4 8103127 8103241 -147526879 + L1MA10 LINE L1 6090 6195 -139 1 646 255 109 65 0 chr4 8103243 8103289 -147526831 - ORR1D1 LTR MaLR 0 374 326 1 646 1686 229 33 16 chr4 8103309 8103677 -147526443 + ORR1D1 LTR MaLR 1 374 0 1 646 320 259 12 12 chr4 8103678 8103764 -147526356 + L1MA10 LINE L1 6193 6278 -56 1 646 323 273 88 35 chr4 8104606 8104720 -147525400 - MLT1A1 LTR MaLR -3 405 286 1 646 1751 214 14 16 chr4 8104813 8105179 -147524941 - ORR1D1 LTR MaLR -1 373 9 1 646 4355 222 123 59 chr4 8105179 8106465 -147523655 - ORR1D1-int LTR MaLR -2 1368 1 1 646 1223 213 193 34 chr4 8106465 8106786 -147523334 - ORR1D1 LTR MaLR 0 374 3 1 646 1789 16 0 0 chr4 8108261 8108452 -147521668 + B2_Mm1a SINE B2 1 191 -2 1 646 1247 147 144 18 chr4 8108965 8109243 -147520877 + Lx9 LINE L1 7332 7644 0 1 646 771 92 0 0 chr4 8109693 8109802 -147520318 + (TCC)n Simple_repeat Simple_repeat 3 111 0 1 646 307 284 0 0 chr4 8109812 8109879 -147520241 - PB1 SINE Alu -20 107 41 1 646 469 282 151 15 chr4 8110828 8111033 -147519087 - MIR SINE MIR -28 234 2 1 646 27 29 0 0 chr4 8111813 8111847 -147518273 + AT_rich Low_complexity Low_complexity 1 34 0 1 646 299 312 10 77 chr4 8112146 8112250 -147517870 + MER77 LTR ERVL 70 166 -441 1 646 349 269 118 62 chr4 8112506 8112684 -147517436 + MER77 LTR ERVL 412 599 -8 1 646 440 216 78 58 chr4 8113110 8113213 -147516907 - B1_Mur3 SINE Alu -42 107 3 1 646 183 72 47 23 chr4 8113425 8113468 -147516652 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 646 401 180 21 78 chr4 8113882 8113991 -147516129 + ORR1C2 LTR MaLR 279 384 0 1 646 1158 188 95 12 chr4 8117465 8117707 -147512413 + Lx6 LINE L1 7188 7449 -11 1 646 862 315 165 9 chr4 8118204 8118755 -147511365 + L1MC3 LINE L1 7128 7764 -21 1 646 186 43 0 0 chr4 8118763 8118786 -147511334 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 646 36195 36 0 0 chr4 8118894 8124119 -147506001 + L1Md_Gf LINE L1 268 5589 -297 1 646 9194 4 0 0 chr4 8124119 8125115 -147505005 + L1Md_T LINE L1 5587 6582 0 1 646 36195 42 0 1 chr4 8125115 8125126 -147504994 + L1Md_Gf LINE L1 5590 5599 -287 1 646 818 287 110 6 chr4 8125552 8125871 -147504249 - MLT1B LTR MaLR -37 353 2 1 647 310 257 0 0 chr4 8127986 8128056 -147502064 - Lx9 LINE L1 -901 6743 6674 1 647 1203 231 4 19 chr4 8128057 8128318 -147501802 + Lx9 LINE L1 7040 7296 -348 1 647 255 238 104 9 chr4 8131269 8131375 -147498745 + PB1D10 SINE Alu 2 117 0 1 647 217 127 0 60 chr4 8131770 8131837 -147498283 + T-rich Low_complexity Low_complexity 4 66 0 1 647 195 100 0 0 chr4 8131835 8131865 -147498255 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 647 421 295 96 37 chr4 8132285 8132609 -147497511 + RLTR15 LTR ERVK 1 343 -16 1 647 515 259 9 0 chr4 8132689 8132805 -147497315 + PB1D10 SINE Alu 1 117 0 1 647 198 239 12 24 chr4 8133682 8133747 -147496373 + L2c LINE L2 3347 3425 -1 1 647 222 378 17 0 chr4 8134083 8134202 -147495918 - L2a LINE L2 -259 3167 3047 1 647 1124 83 14 0 chr4 8134550 8134695 -147495425 + B1_Mus2 SINE Alu 1 147 0 1 647 1642 194 56 6 chr4 8136560 8136897 -147493223 + ORR1B1 LTR MaLR 41 394 0 1 647 525 308 95 33 chr4 8137307 8137643 -147492477 + ORR1E LTR MaLR 1 357 -2 1 647 224 245 0 0 chr4 8139054 8139107 -147491013 + T-rich Low_complexity Low_complexity 1 53 0 1 647 243 0 0 0 chr4 8139260 8139287 -147490833 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 647 354 108 0 0 chr4 8139288 8139353 -147490767 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 647 296 279 44 44 chr4 8139353 8139443 -147490677 - B4A SINE B4 -8 284 195 1 647 226 143 24 0 chr4 8141525 8141567 -147488553 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 1 647 333 0 0 0 chr4 8141954 8141991 -147488129 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 647 21 0 0 0 chr4 8142354 8142375 -147487745 + AT_rich Low_complexity Low_complexity 1 21 0 1 647 196 338 15 0 chr4 8143024 8143092 -147487028 + L3 LINE CR1 4416 4484 -5 1 647 204 125 0 0 chr4 8143691 8143723 -147486397 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1 647 632 90 18 9 chr4 8143725 8143837 -147486283 - L1_Mus3 LINE L1 -10 6628 6516 1 647 505 218 64 0 chr4 8143965 8144075 -147486045 + PB1D10 SINE Alu 1 117 0 1 647 728 308 212 27 chr4 8144110 8144938 -147485182 + Lx8 LINE L1 6476 7456 -17 1 647 234 254 16 0 chr4 8145050 8145113 -147485007 + Lx7 LINE L1 7621 7684 -12 1 647 445 254 9 9 chr4 8146514 8146629 -147483491 - B3A SINE B2 -83 115 1 1 647 4585 83 10 2 chr4 8149038 8149653 -147480467 - L1_Mus4 LINE L1 -1 6635 6016 1 647 4027 124 7 5 chr4 8150293 8150894 -147479226 + L1VL4 LINE L1 188 789 -5513 1 647 6062 86 48 3 chr4 8150887 8151813 -147478307 + MusHAL1 LINE L1 1 967 -1745 2 647 2296 131 8 26 chr4 8151811 8152189 -147477931 + L1_Mm LINE L1 5268 5638 -245 2 647 3152 112 106 0 chr4 8152193 8152676 -147477444 + Lx2 LINE L1 6106 6639 -358 2 647 1441 140 9 0 chr4 8152676 8152904 -147477216 + Lx2 LINE L1 6768 6997 0 2 647 2000 242 11 39 chr4 8153124 8153684 -147476436 + Lx9 LINE L1 4251 4794 -1053 2 647 273 286 112 74 chr4 8153692 8153907 -147476213 + Lx9 LINE L1 5896 6118 -1526 2 647 4147 233 48 16 chr4 8153952 8154933 -147475187 + Lx9 LINE L1 6309 7320 -324 2 647 300 272 0 71 chr4 8154917 8155016 -147475104 + Lx9 LINE L1 7229 7320 -324 2 647 281 256 20 82 chr4 8155000 8155098 -147475022 + Lx9 LINE L1 7229 7320 -324 2 647 295 288 0 0 chr4 8155101 8155181 -147474939 + Lx9 LINE L1 7241 7320 -324 2 647 318 261 0 71 chr4 8155165 8155264 -147474856 + Lx9 LINE L1 7229 7320 -324 2 647 300 272 0 71 chr4 8155248 8155347 -147474773 + Lx9 LINE L1 7229 7320 -324 2 647 300 272 0 71 chr4 8155331 8155430 -147474690 + Lx9 LINE L1 7229 7320 -324 2 647 300 272 0 71 chr4 8155414 8155513 -147474607 + Lx9 LINE L1 7229 7320 -324 2 647 255 276 0 84 chr4 8155497 8155580 -147474540 + Lx9 LINE L1 7229 7304 -340 2 647 637 254 124 60 chr4 8155580 8155814 -147474306 + Lx9 LINE L1 7229 7477 -167 2 647 384 22 0 0 chr4 8155815 8155860 -147474260 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 647 251 307 21 74 chr4 8155901 8155996 -147474124 - RSINE1 SINE B4 -74 91 2 2 647 207 191 24 0 chr4 8156156 8156198 -147473922 - L2a LINE L2 -78 3348 3306 2 647 190 273 171 0 chr4 8157521 8157609 -147472511 - L2a LINE L2 -225 3162 3060 2 647 339 268 18 18 chr4 8157847 8157961 -147472159 + PB1D10 SINE Alu 2 115 -2 2 647 619 271 77 11 chr4 8158111 8158372 -147471748 + MER44A DNA MER2_type 3 280 -59 2 647 24 0 0 0 chr4 8160325 8160349 -147469771 + AT_rich Low_complexity Low_complexity 1 24 0 2 647 1140 82 0 0 chr4 8160376 8160522 -147469598 - B1_Mm SINE Alu 0 147 2 2 647 228 67 0 0 chr4 8160526 8160556 -147469564 + (T)n Simple_repeat Simple_repeat 1 30 0 2 647 353 271 49 43 chr4 8160579 8160741 -147469379 + RSINE1 SINE B4 3 165 0 2 647 378 333 14 36 chr4 8160877 8161017 -147469103 + ID_B1 SINE B4 86 222 -2 2 647 183 28 0 77 chr4 8161022 8161061 -147469059 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 647 632 152 230 10 chr4 8162316 8162374 -147467746 + Lx9 LINE L1 7401 7460 -184 2 647 1242 96 0 0 chr4 8162374 8162647 -147467473 + (CA)n Simple_repeat Simple_repeat 1 273 0 2 647 632 152 230 10 chr4 8162647 8162660 -147467460 + Lx9 LINE L1 7461 7494 -150 2 647 3411 38 5 0 chr4 8162660 8163054 -147467066 + MTA_Mm LTR MaLR 1 396 0 2 647 632 152 230 10 chr4 8163054 8163178 -147466942 + Lx9 LINE L1 7495 7637 -7 2 647 549 241 42 7 chr4 8163473 8163615 -147466505 - B1_Mur2 SINE Alu 0 149 3 2 647 732 154 0 0 chr4 8163893 8164114 -147466006 + (TG)n Simple_repeat Simple_repeat 1 221 0 2 647 237 108 0 0 chr4 8166022 8166059 -147464061 + (TCC)n Simple_repeat Simple_repeat 2 38 0 2 647 368 264 31 39 chr4 8166553 8166683 -147463437 - ID_B1 SINE B4 -6 218 90 2 647 193 0 94 0 chr4 8167423 8167455 -147462665 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 647 8343 44 9 0 chr4 8167521 8169014 -147461106 - L1Md_F2 LINE L1 0 6582 5073 2 647 210 71 0 0 chr4 8170327 8170355 -147459765 + (CCCCCT)n Simple_repeat Simple_repeat 6 33 0 2 647 333 0 0 0 chr4 8170517 8170554 -147459566 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 647 786 268 111 66 chr4 8170571 8170950 -147459170 - L1MA4A LINE L1 -396 5907 5512 2 647 492 314 81 30 chr4 8170956 8171153 -147458967 + B4 SINE B4 86 292 0 2 647 327 49 0 0 chr4 8171153 8171194 -147458926 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 647 558 311 93 51 chr4 8171194 8171820 -147458300 - L1_Mur3 LINE L1 -352 5531 4878 2 647 633 212 174 27 chr4 8171869 8172053 -147458067 - B3 SINE B2 -5 211 1 2 647 318 286 24 12 chr4 8172370 8172455 -147457665 + MLT2B2 LTR ERVL 2 87 -428 2 647 226 322 20 91 chr4 8172455 8172469 -147457651 + MTE2b LTR MaLR 2 93 -286 2 647 219 304 0 125 chr4 8172997 8173125 -147456995 - L2c LINE L2 -222 3165 3054 2 647 23 0 0 0 chr4 8174738 8174761 -147455359 + AT_rich Low_complexity Low_complexity 1 23 0 2 647 1178 235 127 39 chr4 8174966 8175298 -147454822 - MTEb LTR MaLR -1 378 18 2 647 746 281 12 6 chr4 8175384 8175556 -147454564 - B3A SINE B2 -25 173 1 2 647 252 301 97 0 chr4 8175556 8175647 -147454473 - MTEb-int LTR MaLR -26 1554 1455 2 647 1922 232 52 26 chr4 8175691 8176191 -147453929 - Lx7 LINE L1 -240 7456 6944 2 647 22 56 0 0 chr4 8176561 8176597 -147453523 + AT_rich Low_complexity Low_complexity 1 36 0 2 647 3236 180 2 20 chr4 8176671 8177220 -147452900 - Lx5 LINE L1 -177 6873 6335 2 647 200 86 29 0 chr4 8177797 8177832 -147452288 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 647 246 32 0 0 chr4 8177839 8177870 -147452250 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 647 1244 69 0 7 chr4 8177870 8178010 -147452110 - B1_Mus2 SINE Alu -7 140 1 2 647 3989 156 71 10 chr4 8178108 8178416 -147451704 + RMER6D LTR ERVK 1 333 -387 2 647 342 0 0 0 chr4 8178416 8178454 -147451666 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 647 3989 156 71 10 chr4 8178454 8178824 -147451296 + RMER6D LTR ERVK 334 720 0 2 647 655 318 97 61 chr4 8178955 8179400 -147450720 + Tigger9b DNA MER2_type 17 477 -147 2 647 1735 240 46 5 chr4 8180359 8180748 -147449372 - MTD LTR MaLR -14 405 1 2 647 696 124 0 0 chr4 8181241 8181346 -147448774 + L1VL1 LINE L1 403 507 -6131 2 647 33650 67 4 3 chr4 8181342 8186283 -147443837 + L1VL1 LINE L1 639 5586 -297 2 647 9658 1 0 0 chr4 8186283 8187279 -147442841 + L1Md_A LINE L1 5587 6582 0 2 647 1156 75 2 1 chr4 8187330 8187477 -147442643 + L1_Mm LINE L1 5447 5616 -2379 2 647 7373 92 19 3 chr4 8187477 8188453 -147441667 + L1Md_F2 LINE L1 5588 6579 -3 2 647 586 254 34 23 chr4 8188453 8188482 -147441638 + L1_Mm LINE L1 5617 5648 -2347 2 647 307 326 51 0 chr4 8188858 8188996 -147441124 + L1_Mur3 LINE L1 5197 5341 -539 2 647 31 44 0 0 chr4 8189046 8189091 -147441029 + AT_rich Low_complexity Low_complexity 1 45 0 2 647 529 284 87 87 chr4 8189388 8189596 -147440524 - B4A SINE B4 -51 241 34 2 647 1064 264 61 73 chr4 8190196 8190680 -147439440 - MT2B LTR ERVL 0 601 36 2 647 2023 76 189 0 chr4 8190680 8190955 -147439165 - ORR1A2 LTR MaLR 0 327 1 2 647 675 299 97 82 chr4 8190955 8190995 -147439125 - MT2B LTR ERVL -498 35 1 2 647 2490 172 102 6 chr4 8191481 8192020 -147438100 + RMER6C LTR ERVK 1 591 -99 2 647 1986 214 86 41 chr4 8192043 8192554 -147437566 - RLTR20B3 LTR ERVK -43 534 1 2 647 886 242 41 72 chr4 8192555 8192845 -147437275 + RMER6D LTR ERVK 437 717 -3 2 647 468 0 0 0 chr4 8193061 8193113 -147437007 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 2 647 1015 140 73 0 chr4 8193571 8193749 -147436371 - URR1B DNA MER1_type -6 219 29 2 647 757 262 0 0 chr4 8193828 8193977 -147436143 - B1_Mur3 SINE Alu 0 149 1 2 647 286 267 65 32 chr4 8194065 8194158 -147435962 - RSINE1 SINE B4 -68 97 2 2 647 23 0 0 0 chr4 8194224 8194247 -147435873 + AT_rich Low_complexity Low_complexity 1 23 0 2 647 36 0 0 0 chr4 8194265 8194301 -147435819 + AT_rich Low_complexity Low_complexity 1 36 0 2 647 497 80 13 0 chr4 8194915 8194990 -147435130 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 647 22 35 0 0 chr4 8195081 8195110 -147435010 + AT_rich Low_complexity Low_complexity 1 29 0 2 647 2257 211 5 31 chr4 8195383 8195834 -147434286 + RMER1B Other Other 1 757 -309 2 647 559 206 20 10 chr4 8195902 8196000 -147434120 - Lx7 LINE L1 -1172 6524 6426 2 647 584 248 107 31 chr4 8196031 8196097 -147434023 - Lx7 LINE L1 -1439 6257 6189 2 647 468 0 0 0 chr4 8196097 8196149 -147433971 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 647 782 212 389 25 chr4 8196149 8196499 -147433621 - Lx7 LINE L1 -1508 6188 5710 2 647 295 213 0 0 chr4 8196505 8196552 -147433568 - RLTR14 LTR ERV1 -97 285 239 2 647 616 194 0 0 chr4 8196536 8196639 -147433481 + RLTR14 LTR ERV1 280 382 0 2 647 229 337 39 19 chr4 8197260 8197363 -147432757 - MER34 LTR ERV1 -428 114 10 2 647 667 223 57 7 chr4 8197447 8197587 -147432533 + B1_Mur2 SINE Alu 3 149 0 2 647 188 111 0 27 chr4 8197596 8197633 -147432487 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 2 647 234 323 92 30 chr4 8197680 8197811 -147432309 - L2c LINE L2 0 3387 3249 2 647 270 200 250 13 chr4 8197973 8198049 -147432071 + PB1D10 SINE Alu 12 105 -12 2 647 521 348 32 0 chr4 8198414 8198601 -147431519 - MLT1F2 LTR MaLR -78 482 290 2 647 278 372 14 28 chr4 8198621 8198762 -147431358 - MLT1F2 LTR MaLR -347 213 75 2 647 319 301 0 0 chr4 8199700 8199773 -147430347 + ID4_ SINE ID 5 77 -6 2 647 327 308 0 0 chr4 8200370 8200439 -147429681 - RMER21B LTR ERV1 -9 833 765 2 647 4024 148 20 225 chr4 8200439 8201608 -147428512 - RMER21A LTR ERV1 0 947 18 2 647 26 30 0 0 chr4 8201651 8201684 -147428436 + AT_rich Low_complexity Low_complexity 1 33 0 2 647 466 313 85 39 chr4 8201792 8201895 -147428225 - RLTR21 LTR ERVK -167 1405 1302 2 647 303 122 0 0 chr4 8201895 8201944 -147428176 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 647 2561 151 91 209 chr4 8201944 8202450 -147427670 - RMER12 LTR ERVK -432 890 388 2 647 307 0 0 44 chr4 8202450 8202495 -147427625 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 2 647 2561 168 70 129 chr4 8202495 8203039 -147427081 - RMER12 LTR ERVK -937 467 1 2 647 407 267 0 98 chr4 8203072 8203184 -147426936 + PB1D10 SINE Alu 15 115 -2 2 647 210 275 48 125 chr4 8204669 8204773 -147425347 + B4A SINE B4 1 96 -196 2 647 656 257 69 0 chr4 8204779 8204923 -147425197 + RSINE1 SINE B4 9 162 -3 2 647 287 310 61 17 chr4 8205250 8205365 -147424755 + PB1D7 SINE Alu 1 120 0 2 647 3196 178 152 0 chr4 8206114 8206439 -147423681 - RMER6D LTR ERVK 0 720 362 2 647 468 0 0 0 chr4 8206439 8206491 -147423629 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 647 3196 178 152 0 chr4 8206491 8206790 -147423330 - RMER6D LTR ERVK -359 361 2 2 647 454 299 79 0 chr4 8207226 8207390 -147422730 + L1MA9 LINE L1 5853 6029 -262 2 647 299 301 113 75 chr4 8207430 8207717 -147422403 - ORR1E LTR MaLR -55 315 27 2 647 282 115 0 0 chr4 8207807 8207859 -147422261 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 647 180 111 0 0 chr4 8209358 8209385 -147420735 + (CTG)n Simple_repeat Simple_repeat 1 27 0 2 647 288 365 36 0 chr4 8209393 8209530 -147420590 - B1_Mus1 SINE Alu -6 142 1 2 647 364 255 87 10 chr4 8209705 8209808 -147420312 + RSINE1 SINE B4 11 121 -44 2 647 678 195 12 17 chr4 8209828 8210000 -147420120 + C-rich Low_complexity Low_complexity 6 176 0 2 647 510 275 87 29 chr4 8210066 8210238 -147419882 - B3A SINE B2 -16 182 1 3 647 22 0 0 0 chr4 8210241 8210263 -147419857 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 1476 230 17 95 chr4 8210506 8210695 -147419425 - Lx9 LINE L1 -1 7643 7468 3 647 447 52 0 0 chr4 8210695 8210753 -147419367 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 647 1476 230 17 95 chr4 8210753 8211028 -147419092 - Lx9 LINE L1 -177 7467 7215 3 647 1882 234 99 6 chr4 8211035 8211508 -147418612 - Lx9 LINE L1 -784 6860 6344 3 647 287 85 21 0 chr4 8211508 8211555 -147418565 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 647 393 233 14 0 chr4 8211753 8211826 -147418294 + ID4 SINE ID 5 78 -5 3 647 1220 311 50 26 chr4 8211924 8212346 -147417774 - MER88 LTR ERVL 0 464 33 3 647 1936 211 77 20 chr4 8212342 8212786 -147417334 - RMER13A LTR ERVK -380 480 12 3 647 492 18 0 0 chr4 8213323 8213380 -147416740 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 647 3699 150 43 9 chr4 8213941 8214572 -147415548 + Lx6 LINE L1 5134 5785 -95 3 647 1154 57 0 0 chr4 8214574 8214714 -147415406 - L1Md_F2 LINE L1 -166 6416 6277 3 647 763 83 17 0 chr4 8214714 8214834 -147415286 + L1Md_F2 LINE L1 6461 6582 0 3 647 207 0 0 0 chr4 8214837 8214860 -147415260 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 647 1048 240 33 77 chr4 8214860 8215225 -147414895 + Lx6 LINE L1 5780 6128 -1332 3 647 2237 127 26 16 chr4 8215211 8215596 -147414524 + Lx4A LINE L1 6021 6409 -649 3 647 210 250 0 0 chr4 8215615 8215659 -147414461 + A-rich Low_complexity Low_complexity 4 47 0 3 647 969 211 39 10 chr4 8216731 8216937 -147413183 + B3 SINE B2 4 215 -1 3 647 390 309 0 9 chr4 8218496 8218604 -147411516 + PB1D10 SINE Alu 5 111 -6 3 647 280 307 111 22 chr4 8218715 8218805 -147411315 + PB1D7 SINE Alu 6 103 -17 3 647 405 0 0 0 chr4 8218810 8218855 -147411265 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 647 285 210 0 2 chr4 8219549 8219612 -147410508 - B1_Mus2 SINE Alu -86 63 2 3 647 426 53 0 0 chr4 8219902 8219959 -147410161 + (GACTG)n Simple_repeat Simple_repeat 3 59 0 3 647 231 375 0 0 chr4 8219961 8220025 -147410095 + ID4 SINE ID 8 71 -12 3 647 1250 298 85 31 chr4 8220076 8220498 -147409622 + MER82 DNA MER2_type 209 653 0 3 647 875 230 112 25 chr4 8221324 8221520 -147408600 - B3 SINE B2 -3 213 1 3 647 1652 218 96 107 chr4 8221751 8222046 -147408074 - RLTR11A LTR ERVK 0 528 251 3 647 918 103 0 0 chr4 8222046 8222182 -147407938 + (TC)n Simple_repeat Simple_repeat 1 136 0 3 647 1652 218 96 107 chr4 8222182 8222420 -147407700 - RLTR11A LTR ERVK -278 250 1 3 647 200 265 0 0 chr4 8223702 8223751 -147406369 + MER5B DNA MER1_type 1 49 -129 3 647 424 312 65 7 chr4 8223957 8224112 -147406008 + B4 SINE B4 1 164 -128 3 647 37376 34 3 14 chr4 8224897 8227985 -147402135 + L1Md_T LINE L1 390 3445 -2438 3 647 3613 10 2 0 chr4 8227985 8228380 -147401740 - MTA_Mm LTR MaLR 0 396 1 3 647 9084 41 6 3 chr4 8228380 8229474 -147400646 - MTA_Mm-int LTR MaLR 0 1098 1 3 647 3365 28 13 3 chr4 8229474 8229866 -147400254 - MTA_Mm LTR MaLR 0 396 1 3 647 37376 26 1 2 chr4 8229866 8232013 -147398107 + L1Md_T LINE L1 3446 5584 -299 3 647 8587 32 1 0 chr4 8232014 8233008 -147397112 + L1Md_T LINE L1 5588 6582 0 3 647 27 0 0 0 chr4 8233009 8233036 -147397084 + AT_rich Low_complexity Low_complexity 1 27 0 3 647 784 53 0 26 chr4 8233659 8233775 -147396345 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 3 647 3778 214 23 19 chr4 8233887 8234633 -147395487 - Lx5 LINE L1 -1 7049 6301 3 647 525 252 18 30 chr4 8234634 8234798 -147395322 - RLTR11B LTR ERVK -8 445 284 3 647 611 249 72 128 chr4 8234841 8234918 -147395202 - RLTR11B LTR ERVK -175 278 209 3 647 266 0 29 0 chr4 8234918 8234952 -147395168 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 647 611 249 72 128 chr4 8234952 8235164 -147394956 - RLTR11B LTR ERVK -245 208 5 3 647 819 311 81 3 chr4 8235237 8235572 -147394548 - Lx8 LINE L1 -243 7230 6870 3 647 321 359 0 0 chr4 8235762 8235868 -147394252 - PB1D10 SINE Alu -6 111 6 3 647 198 103 0 0 chr4 8236171 8236200 -147393920 + (A)n Simple_repeat Simple_repeat 1 29 0 3 647 314 283 76 29 chr4 8236891 8237062 -147393058 + Tigger7 DNA MER2_type 2104 2282 -209 3 647 474 316 33 33 chr4 8238323 8238506 -147391614 + Lx8 LINE L1 7206 7388 -85 3 647 235 325 52 9 chr4 8238548 8238663 -147391457 + MTEa LTR MaLR 259 378 -1 3 647 706 214 12 22 chr4 8238674 8238958 -147391162 + ORR1C2 LTR MaLR 1 382 -2 3 647 4714 198 50 60 chr4 8238958 8239528 -147390592 + ORR1C2-int LTR MaLR 96 634 -736 3 647 1066 81 0 0 chr4 8239528 8239664 -147390456 + B1_Mus1 SINE Alu 1 136 -12 3 647 4714 198 50 60 chr4 8239664 8239675 -147390445 + ORR1C2-int LTR MaLR 635 650 -720 3 647 435 38 0 0 chr4 8239675 8239728 -147390392 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 3 647 4714 198 50 60 chr4 8239728 8240432 -147389688 + ORR1C2-int LTR MaLR 651 1369 -1 3 647 544 182 0 62 chr4 8240432 8240561 -147389559 + ORR1C2 LTR MaLR 1 121 -263 3 647 2714 91 134 0 chr4 8240562 8240981 -147389139 + IAPLTR2_Mm LTR ERVK 1 475 0 3 647 1175 125 33 107 chr4 8240982 8241275 -147388845 + IAPEz-int LTR ERVK 9 250 -7331 3 647 235 309 0 0 chr4 8241275 8241330 -147388790 + RLTR27 LTR ERVK 221 275 -34 3 647 3472 79 39 40 chr4 8241330 8241971 -147388149 + IAPEz-int LTR ERVK 168 662 -5819 3 647 2672 76 0 3 chr4 8241971 8242314 -147387806 + IAPEz-int LTR ERVK 1359 1700 -4781 3 647 6887 40 4 17 chr4 8242307 8243147 -147386973 + IAPEz-int LTR ERVK 5651 6479 -2 3 647 2562 96 129 37 chr4 8243149 8243584 -147386536 + IAPLTR2_Mm LTR ERVK 1 475 0 3 647 318 214 29 0 chr4 8243584 8243654 -147386466 + ORR1C2 LTR MaLR 109 180 -198 3 647 936 132 0 0 chr4 8243656 8243808 -147386312 + (TC)n Simple_repeat Simple_repeat 2 153 0 3 647 300 53 0 0 chr4 8243823 8243861 -147386259 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 647 489 138 0 0 chr4 8243864 8243958 -147386162 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 647 630 156 0 0 chr4 8243982 8244091 -147386029 + ORR1C2 LTR MaLR 276 384 0 3 647 310 182 124 11 chr4 8244093 8244182 -147385938 + L1M4b LINE L1 1920 2018 -5316 3 647 4270 206 40 4 chr4 8244746 8245553 -147384567 - Lx5 LINE L1 0 7050 6215 3 647 3164 175 114 4 chr4 8245560 8246415 -147383705 - Lx5 LINE L1 -1046 6012 5045 3 647 10418 82 2 10 chr4 8246415 8248561 -147381559 + L1_Mus1 LINE L1 4445 6567 0 3 647 18191 161 61 40 chr4 8248578 8248789 -147381331 - Lx5 LINE L1 -819 5058 4858 3 647 4540 85 2 2 chr4 8248789 8249391 -147380729 - L1_Mus2 LINE L1 0 6566 5965 3 647 18191 161 61 40 chr4 8249391 8250701 -147379419 - Lx5 LINE L1 -1020 4857 3483 3 647 306 0 0 0 chr4 8250701 8250735 -147379385 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 647 18191 161 61 40 chr4 8250735 8250765 -147379355 - Lx5 LINE L1 -2395 3482 3427 3 647 1807 157 26 76 chr4 8250765 8251109 -147379011 - ORR1A2 LTR MaLR 0 327 1 3 647 18191 161 61 40 chr4 8251109 8252503 -147377617 - Lx5 LINE L1 -2451 3426 2056 3 647 570 15 0 0 chr4 8252503 8252570 -147377550 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 647 18191 161 61 40 chr4 8252570 8253382 -147376738 - Lx5 LINE L1 -3822 2055 1221 3 647 821 192 74 23 chr4 8253390 8253566 -147376554 - B2_Mm2 SINE B2 -10 185 1 3 647 257 20 0 74 chr4 8253579 8253633 -147376487 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 3 647 3074 138 42 8 chr4 8253648 8254146 -147375974 - Lx LINE L1 -25 6629 6115 3 647 1116 81 7 0 chr4 8254142 8254290 -147375830 - Lx LINE L1 -642 6012 5864 3 647 1322 195 52 7 chr4 8254498 8254817 -147375303 - Lx5 LINE L1 -5341 1293 907 3 647 1888 178 35 23 chr4 8255044 8255440 -147374680 - L1_Mur3 LINE L1 -1922 3958 3558 3 647 432 0 0 0 chr4 8256132 8256180 -147373940 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 647 355 153 75 86 chr4 8256242 8256298 -147373822 + PB1D9 SINE Alu 20 80 -40 3 647 1698 182 154 17 chr4 8256298 8256656 -147373464 - MTB_Mm LTR MaLR 0 407 1 3 647 355 99 63 101 chr4 8256656 8256700 -147373420 + PB1D9 SINE Alu 81 125 -2 3 647 724 163 6 6 chr4 8256719 8256748 -147373372 + polypurine Low_complexity Low_complexity 2 30 0 3 647 1224 67 0 0 chr4 8256748 8256928 -147373192 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 647 724 163 6 6 chr4 8256928 8257071 -147373049 + GA-rich Low_complexity Low_complexity 31 174 0 3 80 587 168 33 87 chr4 8257520 8257670 -147372450 + B1_Mur1 SINE Alu 8 149 0 3 648 228 167 0 0 chr4 8257928 8257976 -147372144 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 648 1919 68 4 0 chr4 8260103 8260353 -147369767 - L1_Mus1 LINE L1 0 6567 6317 3 648 272 229 0 91 chr4 8260434 8260511 -147369609 + MTE2a LTR MaLR 248 317 -62 3 648 1881 156 12 101 chr4 8260727 8261134 -147368986 - ORR1B1 LTR MaLR 0 394 24 3 648 528 16 0 0 chr4 8261374 8261435 -147368685 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 3 648 1105 45 0 8 chr4 8261435 8261569 -147368551 - B1_Mm SINE Alu -13 134 2 3 648 457 238 19 95 chr4 8261898 8262059 -147368061 + ORR1C2 LTR MaLR 23 183 -191 3 648 797 166 12 0 chr4 8262059 8262222 -147367898 + CT-rich Low_complexity Low_complexity 3 167 0 3 648 814 212 66 0 chr4 8262224 8262422 -147367698 + ORR1C2 LTR MaLR 174 384 0 3 648 2881 254 127 30 chr4 8262422 8262995 -147367125 + ORR1C2-int LTR MaLR 1 608 -762 3 648 1362 94 16 10 chr4 8262995 8263188 -147366932 + B2_Mm2 SINE B2 2 195 0 3 648 2881 254 127 30 chr4 8263188 8263679 -147366441 + ORR1C2-int LTR MaLR 609 1171 -199 3 648 1156 130 73 9 chr4 8263679 8263897 -147366223 + RLTR17 LTR ERVK 1 232 -460 3 648 3909 133 72 10 chr4 8263875 8264650 -147365470 + RMER17B LTR ERVK 160 954 -4 3 648 760 109 0 0 chr4 8264653 8264772 -147365348 + Lx LINE L1 6534 6652 -2 3 648 427 256 74 95 chr4 8265502 8265533 -147364587 - B3A SINE B2 -2 196 168 3 648 423 0 0 0 chr4 8265533 8265580 -147364540 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 648 427 256 74 95 chr4 8265580 8265738 -147364382 - B3A SINE B2 -31 167 11 3 648 725 170 7 0 chr4 8265771 8265912 -147364208 + CT-rich Low_complexity Low_complexity 3 144 0 3 648 788 203 133 5 chr4 8266342 8266530 -147363590 - MTD LTR MaLR -195 224 13 3 648 708 35 0 0 chr4 8266560 8266647 -147363473 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 648 242 296 237 25 chr4 8266650 8266688 -147363432 - RSINE1 SINE B4 -18 147 110 3 648 2107 162 55 6 chr4 8266688 8267054 -147363066 - ORR1C2 LTR MaLR 0 384 1 3 648 242 296 237 25 chr4 8267054 8267133 -147362987 - RSINE1 SINE B4 -56 109 5 3 648 358 331 91 53 chr4 8267881 8268200 -147361920 + ORR1C2 LTR MaLR 44 374 0 3 648 578 315 60 68 chr4 8268202 8268359 -147361761 + MLT1A0 LTR MaLR 1 156 -209 3 648 870 161 14 0 chr4 8268359 8268502 -147361618 + B1_Mus1 SINE Alu 3 147 -1 3 648 578 315 60 68 chr4 8268502 8268709 -147361411 + MLT1A0 LTR MaLR 157 362 -3 3 648 513 262 16 0 chr4 8269104 8269226 -147360894 - ORR1D2 LTR MaLR -19 351 228 3 648 23 0 0 0 chr4 8269562 8269585 -147360535 + AT_rich Low_complexity Low_complexity 1 23 0 3 648 289 216 125 0 chr4 8270068 8270156 -147359964 - PB1D10 SINE Alu -1 116 18 3 648 27 49 0 0 chr4 8270190 8270231 -147359889 + AT_rich Low_complexity Low_complexity 1 41 0 3 648 180 0 0 0 chr4 8270231 8270251 -147359869 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 648 234 0 0 0 chr4 8270251 8270276 -147359844 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 648 492 293 68 31 chr4 8270277 8270439 -147359681 - B3A SINE B2 -24 174 7 3 648 354 138 0 0 chr4 8270589 8270647 -147359473 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 648 1157 48 0 24 chr4 8271099 8271268 -147358852 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 3 648 261 0 0 0 chr4 8271268 8271297 -147358823 + (TGGG)n Simple_repeat Simple_repeat 3 31 0 3 648 690 75 0 0 chr4 8271297 8271390 -147358730 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 3 648 820 256 118 32 chr4 8271911 8272190 -147357930 - MTD LTR MaLR -14 405 103 3 648 8040 61 1 0 chr4 8272190 8273266 -147356854 + L1_Mus1 LINE L1 5491 6567 0 3 648 532 126 39 0 chr4 8273294 8273397 -147356723 + Lx4A LINE L1 6952 7058 0 4 648 252 59 0 0 chr4 8273397 8273431 -147356689 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 4 648 243 0 0 0 chr4 8274196 8274223 -147355897 + (A)n Simple_repeat Simple_repeat 1 27 0 4 648 207 0 0 0 chr4 8274620 8274643 -147355477 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 648 244 234 30 45 chr4 8274647 8274714 -147355406 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 4 648 461 136 23 0 chr4 8275809 8275897 -147354223 + CT-rich Low_complexity Low_complexity 3 92 0 4 648 601 218 6 64 chr4 8275899 8275912 -147354208 - B1_Mur3 SINE Alu 0 149 137 4 648 1193 39 0 37 chr4 8275912 8276099 -147354021 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 648 601 218 6 64 chr4 8276099 8276242 -147353878 - B1_Mur3 SINE Alu -13 136 2 4 648 17802 74 14 10 chr4 8276433 8279298 -147350822 - MusHAL1 LINE L1 0 3353 477 4 648 357 223 51 43 chr4 8279298 8279415 -147350705 - MER2 DNA MER2_type -119 226 109 4 648 1932 261 55 86 chr4 8279423 8279486 -147350634 - L1MA4 LINE L1 -96 6204 6137 4 648 5197 166 41 8 chr4 8279486 8280359 -147349761 + RMER19B LTR ERVK 1 902 0 4 648 1932 261 55 86 chr4 8280359 8280561 -147349559 - L1MA4 LINE L1 -164 6136 5957 4 648 337 219 16 0 chr4 8280561 8280625 -147349495 - ID4_ SINE ID -17 66 2 4 648 1932 261 55 86 chr4 8280625 8281233 -147348887 - L1MA4 LINE L1 -344 5956 5357 4 648 593 284 102 49 chr4 8281292 8281340 -147348780 - B4A SINE B4 -35 257 215 4 648 270 21 42 21 chr4 8281340 8281388 -147348732 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 648 593 284 102 49 chr4 8281388 8281583 -147348537 - B4A SINE B4 -78 214 1 4 648 227 319 0 0 chr4 8281606 8281675 -147348445 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 648 2377 246 84 23 chr4 8282538 8282606 -147347514 - Lx9 LINE L1 -804 6840 6777 4 648 2767 126 17 46 chr4 8282606 8283081 -147347039 - RMER6B LTR ERVK 0 461 1 4 648 2377 246 84 23 chr4 8283081 8283657 -147346463 - Lx9 LINE L1 -868 6776 6157 4 648 2673 189 64 6 chr4 8283693 8284224 -147345896 + Lx9 LINE L1 6848 7409 -235 4 648 468 0 0 0 chr4 8284230 8284282 -147345838 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 4 648 486 0 0 0 chr4 8284287 8284341 -147345779 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 648 333 82 159 34 chr4 8284350 8284438 -147345682 + Lx9 LINE L1 7533 7631 -13 4 648 212 169 81 48 chr4 8284737 8284799 -147345321 + BC1_Mm scRNA scRNA 3 66 -86 4 648 8221 78 7 17 chr4 8285038 8286899 -147343221 + L1_Mus2 LINE L1 4783 6582 0 4 648 706 254 81 25 chr4 8286911 8287109 -147343011 + MTD LTR MaLR 206 414 -5 4 648 2117 256 91 71 chr4 8287127 8287439 -147342681 + MTD-int LTR MaLR 25 383 -875 4 648 243 0 0 0 chr4 8287439 8287466 -147342654 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 4 648 2117 256 91 71 chr4 8287466 8287985 -147342135 + MTD-int LTR MaLR 384 873 -385 4 648 324 70 0 0 chr4 8288027 8288070 -147342050 + (TCTCCC)n Simple_repeat Simple_repeat 5 47 0 4 648 765 194 29 0 chr4 8288070 8288240 -147341880 + MTD LTR MaLR 244 418 -1 4 648 186 288 30 15 chr4 8288587 8288654 -147341466 - L2b LINE L2 -229 3146 3079 4 648 22 0 0 0 chr4 8289129 8289151 -147340969 + AT_rich Low_complexity Low_complexity 1 22 0 4 648 1252 34 0 0 chr4 8290474 8290620 -147339500 + B1_Mus2 SINE Alu 1 146 -1 4 648 267 333 29 7 chr4 8291571 8291707 -147338413 + MLT1C LTR MaLR 16 154 -236 4 648 354 23 0 0 chr4 8291711 8291754 -147338366 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 648 900 274 21 4 chr4 8291769 8292011 -147338109 + MLT1C LTR MaLR 214 459 -8 4 648 182 310 14 14 chr4 8292436 8292508 -147337612 + L2b LINE L2 3303 3374 -1 4 648 429 70 0 0 chr4 8292975 8293032 -147337088 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 648 21 0 0 0 chr4 8293240 8293261 -147336859 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 669 263 52 30 chr4 8293791 8294061 -147336059 - MER58D DNA MER1_type -3 383 108 4 648 234 368 204 6 chr4 8296127 8296480 -147333640 + L2 LINE L2 2279 2701 -718 4 648 231 260 60 103 chr4 8297313 8297343 -147332777 + B1F SINE Alu 6 29 -120 4 648 2079 94 94 0 chr4 8297343 8297642 -147332478 - ORR1A2 LTR MaLR 0 327 1 4 648 231 260 60 103 chr4 8297642 8297727 -147332393 + B1F SINE Alu 30 116 -33 4 648 493 249 10 131 chr4 8297860 8297942 -147332178 - MER2 DNA MER2_type -54 291 223 4 648 4865 162 38 17 chr4 8297942 8298781 -147331339 - RMER13A LTR ERVK -3 857 1 4 648 493 249 10 131 chr4 8298781 8298897 -147331223 - MER2 DNA MER2_type -123 222 117 4 648 243 0 0 0 chr4 8299505 8299532 -147330588 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 648 195 282 33 76 chr4 8300628 8300720 -147329400 + MIRc SINE MIR 73 160 -108 4 648 181 225 27 47 chr4 8302992 8303141 -147326979 + GA-rich Low_complexity Low_complexity 1 146 0 4 648 210 143 0 0 chr4 8302997 8303032 -147327088 + (GGA)n Simple_repeat Simple_repeat 2 36 0 4 648 305 159 145 0 chr4 8303500 8303569 -147326551 + RMER15 LTR ERVL 27 105 -470 4 648 214 217 54 68 chr4 8304330 8304404 -147325716 + PB1D7 SINE Alu 31 103 -17 4 648 234 0 0 0 chr4 8304405 8304431 -147325689 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 4 648 527 0 16 0 chr4 8304432 8304495 -147325625 + (CAAGA)n Simple_repeat Simple_repeat 5 68 0 4 648 211 200 0 0 chr4 8304499 8304534 -147325586 + polypurine Low_complexity Low_complexity 1 35 0 4 648 672 242 19 7 chr4 8304573 8304727 -147325393 + B3 SINE B2 51 206 -10 4 648 1107 174 34 5 chr4 8305527 8305735 -147324385 - URR1B DNA MER1_type -1 224 11 4 648 905 247 42 100 chr4 8306154 8306553 -147323567 - MLT1B LTR MaLR -4 463 3 4 648 436 311 157 16 chr4 8307301 8307549 -147322571 + B4A SINE B4 2 284 -8 4 648 243 246 33 0 chr4 8307567 8307628 -147322492 + (CATA)n Simple_repeat Simple_repeat 1 63 0 4 648 276 344 91 30 chr4 8310210 8310408 -147319712 - LTR33A LTR ERVL -173 347 138 4 648 228 228 0 0 chr4 8310480 8310537 -147319583 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 648 1292 215 157 6 chr4 8310931 8311268 -147318852 + MTD LTR MaLR 18 405 -14 4 648 837 132 14 11 chr4 8311308 8311588 -147318532 + (TG)n Simple_repeat Simple_repeat 1 281 0 4 648 260 275 0 0 chr4 8311625 8311694 -147318426 - B4A SINE B4 -18 274 206 4 648 488 309 47 63 chr4 8311784 8312140 -147317980 - RLTR12B LTR ERVK -228 300 10 4 648 500 283 47 35 chr4 8312165 8312337 -147317783 - B4A SINE B4 -87 205 32 4 648 39821 35 0 3 chr4 8312774 8315287 -147314833 - L1Md_T LINE L1 0 6582 4085 4 648 4335 8 0 0 chr4 8315287 8315762 -147314358 + L1Md_A LINE L1 6108 6582 0 4 648 39821 30 0 4 chr4 8315762 8318681 -147311439 - L1Md_T LINE L1 -1799 4084 1170 4 648 5546 151 35 42 chr4 8318687 8319772 -147310348 - L1Md_T LINE L1 -5411 1205 128 4 648 3813 26 55 128 chr4 8319772 8320423 -147309697 + RLTR6_Mm LTR ERV1 1 604 -50 4 648 5718 62 9 102 chr4 8320424 8321338 -147308782 + RLTR6-int LTR ERV1 1 829 -6949 4 648 406 183 108 49 chr4 8321332 8321498 -147308622 + MMVL30-int LTR ERV1 280 533 -7023 4 648 18194 42 45 4 chr4 8321769 8324633 -147305487 + MMVL30-int LTR ERV1 716 3698 0 4 648 3680 25 57 131 chr4 8324633 8325266 -147304854 + RLTR6_Mm LTR ERV1 1 586 -68 4 648 2388 214 5 9 chr4 8325270 8325936 -147304184 - L1Md_T LINE L1 -5923 693 99 4 648 186 43 0 0 chr4 8326511 8326534 -147303586 + (A)n Simple_repeat Simple_repeat 1 23 0 4 648 1137 239 84 46 chr4 8326628 8326974 -147303146 - ORR1E LTR MaLR 0 359 1 4 648 256 338 82 34 chr4 8327494 8327727 -147302393 + MamRep605 Unknown Unknown 591 834 -42 4 648 5193 137 22 28 chr4 8328292 8329214 -147300906 + L1Md_A LINE L1 441 1343 -5381 4 648 11836 54 1 0 chr4 8331998 8333454 -147296666 + L1Md_F3 LINE L1 4129 5586 -297 4 648 8685 39 10 0 chr4 8333454 8334442 -147295678 + L1Md_F3 LINE L1 5587 6584 0 4 648 945 160 206 0 chr4 8334934 8335109 -147295011 + B3 SINE B2 5 215 -1 4 648 793 291 151 31 chr4 8335148 8335407 -147294713 + B4 SINE B4 2 291 -1 4 648 243 162 0 0 chr4 8335454 8335491 -147294629 - U2 snRNA snRNA -150 38 2 4 648 344 289 61 0 chr4 8335584 8335698 -147294422 + Tigger5 DNA MER2_type 2286 2406 0 4 648 1623 195 54 24 chr4 8335967 8336603 -147293517 + L1_Mur3 LINE L1 843 1505 -4375 4 648 468 51 0 0 chr4 8336603 8336662 -147293458 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 648 1064 58 0 28 chr4 8336684 8336827 -147293293 + B1_Mm SINE Alu 9 147 0 4 648 1246 178 4 8 chr4 8336835 8337075 -147293045 + Lx7 LINE L1 1747 1968 -3912 4 648 3096 81 0 0 chr4 8337080 8337465 -147292655 - L1Md_T LINE L1 -1 6581 6197 4 648 4953 42 3 0 chr4 8337466 8338129 -147291991 + L1Md_F2 LINE L1 5515 6179 -403 4 648 1693 190 58 17 chr4 8338126 8338543 -147291577 + Lx7 LINE L1 1964 2397 -3483 4 648 3179 159 92 3 chr4 8338558 8339171 -147290949 + L1Md_F LINE L1 573 1239 -6473 4 648 2000 76 74 28 chr4 8339171 8339456 -147290664 + L1_Mus2 LINE L1 6269 6566 0 4 648 12956 171 65 34 chr4 8339456 8341657 -147288463 + Lx7 LINE L1 2385 4630 -1250 4 648 279 0 0 0 chr4 8341657 8341688 -147288432 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 648 12956 194 72 27 chr4 8341688 8343241 -147286879 + Lx7 LINE L1 4630 6392 -1304 4 648 1575 206 162 63 chr4 8343241 8343709 -147286411 + MT2A LTR ERVL 1 601 0 4 648 5036 204 48 7 chr4 8343710 8344696 -147285424 + Lx7 LINE L1 6389 7414 -282 4 648 243 0 0 0 chr4 8344696 8344723 -147285397 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 648 352 234 114 62 chr4 8344723 8344910 -147285210 + Lx7 LINE L1 7498 7695 -1 4 648 191 177 124 137 chr4 8345569 8345658 -147284462 + MIR SINE MIR 15 101 -161 4 648 342 67 0 0 chr4 8345925 8345970 -147284150 + (AGGGGG)n Simple_repeat Simple_repeat 2 46 0 4 648 2196 147 30 3 chr4 8346430 8346791 -147283329 - RLTR14 LTR ERV1 -5 377 7 4 648 285 259 11 105 chr4 8347982 8348077 -147282043 + ID4 SINE ID 1 86 -66 4 648 927 177 14 0 chr4 8348152 8348299 -147281821 + B1_Mur1 SINE Alu 1 149 0 4 648 26 30 0 0 chr4 8348334 8348367 -147281753 + AT_rich Low_complexity Low_complexity 1 33 0 4 648 435 220 18 44 chr4 8349190 8349304 -147280816 + PB1D10 SINE Alu 1 111 -6 4 648 594 316 38 12 chr4 8349329 8349489 -147280631 + RSINE1 SINE B4 2 165 0 4 648 1093 252 173 34 chr4 8350004 8350473 -147279647 + Lx9 LINE L1 7110 7643 -1 4 648 21 0 0 0 chr4 8350485 8350506 -147279614 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 1012 293 13 20 chr4 8350635 8350975 -147279145 + L3b LINE CR1 4065 4382 -107 4 648 185 0 40 0 chr4 8351601 8351626 -147278494 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4 648 306 283 20 80 chr4 8351948 8352048 -147278072 + PB1D10 SINE Alu 11 104 -13 4 648 1005 56 0 0 chr4 8352058 8352183 -147277937 - B1_Mus1 SINE Alu -12 136 12 4 648 1776 46 0 14 chr4 8352183 8352402 -147277718 + L1Md_A LINE L1 6367 6582 0 5 648 253 261 51 25 chr4 8353217 8353307 -147276813 + MTA_Mm LTR MaLR 6 92 -329 5 648 407 250 24 32 chr4 8353545 8353669 -147276451 - RMER20B LTR ERVK -271 356 234 5 648 304 313 15 30 chr4 8353898 8354033 -147276087 + MT2A LTR ERVL 185 317 -216 5 648 225 0 0 0 chr4 8354043 8354068 -147276052 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 648 251 85 0 21 chr4 8354256 8354304 -147275816 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 648 1073 92 24 6 chr4 8354316 8354481 -147275639 - Lx LINE L1 -1 6653 6486 5 648 711 100 25 0 chr4 8354752 8354872 -147275248 - L1_Mus3 LINE L1 -4 6634 6512 5 648 237 361 132 24 chr4 8355145 8355358 -147274762 - L2 LINE L2 -358 3061 2826 5 648 498 128 0 0 chr4 8355359 8355453 -147274667 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 648 490 256 23 8 chr4 8355542 8355672 -147274448 - B1F SINE Alu -17 132 1 5 648 183 336 26 60 chr4 8356445 8356562 -147273558 + L2b LINE L2 3251 3363 -12 5 648 272 312 126 52 chr4 8356945 8357175 -147272945 - MER77 LTR ERVL -93 514 234 5 648 245 296 0 27 chr4 8357274 8357347 -147272773 - MER77 LTR ERVL -480 127 57 5 648 337 310 36 0 chr4 8358630 8358721 -147271399 - B1F2 SINE Alu -9 108 16 5 648 34 65 0 0 chr4 8359349 8359411 -147270709 + AT_rich Low_complexity Low_complexity 1 62 0 5 648 234 0 0 0 chr4 8359439 8359465 -147270655 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 648 321 26 0 0 chr4 8359465 8359502 -147270618 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 648 670 336 75 16 chr4 8360006 8360349 -147269771 - ORR1E LTR MaLR -1 378 1 5 648 238 244 37 96 chr4 8360515 8360651 -147269469 + L1MEg LINE L1 633 760 -5324 5 648 3644 35 0 0 chr4 8361045 8361441 -147268679 + MTA_Mm LTR MaLR 1 396 0 5 648 299 23 47 0 chr4 8361555 8361598 -147268522 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 648 193 303 12 106 chr4 8361636 8361721 -147268399 + L4 LINE RTE 1368 1444 -585 5 648 824 249 80 93 chr4 8361788 8361872 -147268248 + Lx3_Mus LINE L1 32 113 -6871 5 648 210 37 0 0 chr4 8361872 8361899 -147268221 + (CCCCAA)n Simple_repeat Simple_repeat 2 28 0 5 648 824 249 80 93 chr4 8361899 8362200 -147267920 + Lx3_Mus LINE L1 114 411 -6573 5 648 18966 107 29 17 chr4 8362203 8363534 -147266586 + Lx3_Mus LINE L1 676 2047 -3839 5 648 1424 77 16 11 chr4 8363534 8363718 -147266402 + B2_Mm2 SINE B2 1 185 -10 5 648 18966 85 19 17 chr4 8363718 8365619 -147264501 + Lx3_Mus LINE L1 2048 3985 -1901 5 648 27256 104 16 5 chr4 8365620 8370191 -147259929 + L1Md_F LINE L1 511 5137 -746 5 648 31234 81 19 40 chr4 8370192 8375718 -147254402 + L1_Mus1 LINE L1 1 5125 -761 5 648 8944 37 0 0 chr4 8375718 8376714 -147253406 + L1Md_T LINE L1 5587 6582 0 5 648 31234 73 9 17 chr4 8376714 8378183 -147251937 + L1_Mus1 LINE L1 5126 6570 0 5 648 14296 72 43 8 chr4 8378181 8381129 -147248991 + Lx3_Mus LINE L1 3964 7009 0 5 648 599 252 0 0 chr4 8381310 8381425 -147248695 - PB1D10 SINE Alu -2 115 1 5 648 331 236 234 7 chr4 8381471 8381612 -147248508 + MIR SINE MIR 69 241 -21 5 648 429 20 0 0 chr4 8381920 8381970 -147248150 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 648 978 214 28 9 chr4 8382649 8382861 -147247259 - B3 SINE B2 0 216 1 5 648 486 196 0 93 chr4 8384111 8384149 -147245971 - B1_Mur1 SINE Alu 0 149 115 5 648 2324 175 33 0 chr4 8384149 8384515 -147245605 + ORR1C1 LTR MaLR 1 378 0 5 648 486 196 0 93 chr4 8384515 8384594 -147245526 - B1_Mur1 SINE Alu -35 114 44 5 648 1164 198 0 42 chr4 8384620 8384836 -147245284 + B3 SINE B2 1 207 -9 5 648 420 20 0 0 chr4 8384837 8384886 -147245234 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 648 641 146 7 0 chr4 8384886 8385023 -147245097 + (TATG)n Simple_repeat Simple_repeat 1 138 0 5 648 14425 115 9 6 chr4 8385227 8386143 -147243977 + L1VL4 LINE L1 49 969 -5333 5 648 2127 96 51 7 chr4 8386143 8386438 -147243682 + L1_Mus3 LINE L1 6322 6629 -9 5 648 14425 82 22 41 chr4 8386438 8388575 -147241545 + L1VL4 LINE L1 948 3060 -499 5 649 2888 87 7 7 chr4 8388961 8389364 -147240756 - RLTR9D LTR ERVK 0 403 1 5 649 421 135 27 13 chr4 8389365 8389440 -147240680 - MMETn-int LTR ERVK -2 7404 7329 5 649 3900 189 32 36 chr4 8389653 8391691 -147238429 - MMETn-int LTR ERVK -3321 4085 2356 5 649 2556 148 71 9 chr4 8391707 8392170 -147237950 - MMETn-int LTR ERVK -4419 2987 2496 5 649 4316 153 115 20 chr4 8392190 8393118 -147237002 - RLTR45-int LTR ERVK -4141 3103 2088 5 649 1119 242 43 64 chr4 8393133 8393525 -147236595 - ETnERV-int LTR ERVK -2928 386 3 5 649 2508 110 7 17 chr4 8393527 8393734 -147236386 - RLTR9D LTR ERVK 0 403 201 5 649 4320 84 22 30 chr4 8393734 8394326 -147235794 + LTRIS_Mus LTR ERV1 1 587 0 5 649 2508 110 7 17 chr4 8394326 8394525 -147235595 - RLTR9D LTR ERVK -203 200 1 5 649 246 105 0 0 chr4 8394880 8394918 -147235202 + (A)n Simple_repeat Simple_repeat 1 38 0 5 649 332 235 70 12 chr4 8394918 8395004 -147235116 + B3 SINE B2 120 210 -6 5 649 24 0 0 0 chr4 8395052 8395076 -147235044 + AT_rich Low_complexity Low_complexity 1 24 0 5 649 13570 153 38 10 chr4 8395076 8395767 -147234353 + Lx LINE L1 3397 4085 -1792 5 649 3458 76 9 109 chr4 8395767 8396343 -147233777 - MURVY-LTR LTR ERV1 -1 518 1 5 649 13570 149 38 8 chr4 8396343 8398809 -147231311 + Lx LINE L1 4086 6654 0 5 649 3439 25 5 2 chr4 8399680 8400075 -147230045 + MTA_Mm LTR MaLR 1 396 0 5 649 232 250 21 49 chr4 8400108 8400209 -147229911 + T-rich Low_complexity Low_complexity 43 139 0 5 649 1546 132 6 268 chr4 8400209 8400747 -147229373 + RMER10B LTR ERVL 2 398 0 5 649 232 250 21 49 chr4 8400747 8400788 -147229332 + T-rich Low_complexity Low_complexity 1 42 0 5 649 293 158 171 0 chr4 8400788 8400864 -147229256 - Lx8 LINE L1 -2 7471 7383 5 649 372 316 44 0 chr4 8400880 8401016 -147229104 - Lx8 LINE L1 -164 7309 7168 5 649 972 248 283 7 chr4 8401007 8401417 -147228703 - Lx7 LINE L1 -565 7131 6609 5 649 914 183 27 16 chr4 8401477 8401660 -147228460 + B3 SINE B2 30 214 -2 5 649 2585 151 9 9 chr4 8401907 8402328 -147227792 + MTC LTR MaLR 1 421 0 5 649 600 237 7 86 chr4 8402596 8402748 -147227372 + B1_Mur1 SINE Alu 2 141 -8 5 649 330 366 19 32 chr4 8402767 8403080 -147227040 + L1M2 LINE L1 2131 2444 -3699 5 649 438 304 103 34 chr4 8403080 8403342 -147226778 + B4A SINE B4 1 280 -12 5 649 216 259 0 0 chr4 8403384 8403465 -147226655 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 649 1023 296 103 78 chr4 8403475 8404208 -147225912 + L1M2 LINE L1 2424 3145 -2998 5 649 3918 16 0 0 chr4 8404208 8404646 -147225474 + L1Md_A LINE L1 6144 6581 -1 5 649 1023 296 103 78 chr4 8404646 8405137 -147224983 + L1M2 LINE L1 3146 3679 -2464 5 649 391 294 146 19 chr4 8405130 8405335 -147224785 + L1_Mur3 LINE L1 3891 4121 -1759 5 649 519 211 124 73 chr4 8405316 8405563 -147224557 + L1_Mur3 LINE L1 3163 3422 -2425 5 649 227 230 250 0 chr4 8405668 8405684 -147224436 + ID_B1 SINE B4 73 197 -27 5 649 281 221 36 83 chr4 8405684 8405768 -147224352 + B1F1 SINE Alu 11 90 -59 5 649 710 11 0 32 chr4 8406061 8406155 -147223965 + B1_Mm SINE Alu 57 147 0 5 649 802 157 33 0 chr4 8406499 8406652 -147223468 - RMER16 LTR ERVK 0 533 376 5 649 38998 38 2 3 chr4 8406673 8412901 -147217219 - L1Md_T LINE L1 -3 6582 262 5 649 641 114 241 7 chr4 8412905 8413046 -147217074 - RMER16 LTR ERVK -118 415 242 5 649 251 265 29 14 chr4 8413046 8413115 -147217005 - ETnERV2-int LTR ERVK -4866 2540 2471 5 649 8628 106 56 8 chr4 8413124 8414428 -147215692 - Lx2 LINE L1 0 6997 5632 5 649 293 225 138 0 chr4 8414480 8414560 -147215560 - ID_B1 SINE B4 -32 192 102 5 649 4505 12 2 0 chr4 8415394 8415886 -147214234 - MT2_Mm LTR ERVL 0 493 1 5 649 321 0 0 0 chr4 8415886 8415924 -147214196 - MERVL-int LTR ERVL 0 5485 5448 5 649 344 179 46 35 chr4 8415924 8416011 -147214109 - ORR1A3-int LTR MaLR -1323 640 553 5 649 41378 17 14 0 chr4 8416011 8421298 -147208822 - MERVL-int LTR ERVL -125 5360 1 5 649 4505 12 2 0 chr4 8421298 8421790 -147208330 - MT2_Mm LTR ERVL 0 493 1 5 649 257 185 71 36 chr4 8421888 8421972 -147208148 - PB1D10 SINE Alu -3 114 28 5 649 572 229 77 44 chr4 8422194 8422377 -147207743 + B2_Mm2 SINE B2 7 195 0 5 649 257 324 0 0 chr4 8422425 8422496 -147207624 + MIR SINE MIR 180 250 -12 5 649 229 390 0 10 chr4 8422517 8422613 -147207507 + ID_B1 SINE B4 82 176 -48 5 649 359 323 0 0 chr4 8422532 8422628 -147207492 + PB1D10 SINE Alu 15 110 -7 5 649 849 112 45 0 chr4 8422639 8422773 -147207347 + B2_Mm2 SINE B2 1 140 -55 5 649 360 0 0 0 chr4 8422789 8422829 -147207291 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 649 264 290 206 35 chr4 8422842 8423157 -147206963 - MLT1K LTR MaLR -26 569 197 5 649 1568 172 45 85 chr4 8423157 8423458 -147206662 + ORR1C2 LTR MaLR 1 285 -99 5 649 1070 127 184 5 chr4 8423458 8423648 -147206472 + URR1B DNA MER1_type 2 225 0 5 649 1568 172 45 85 chr4 8423648 8423746 -147206374 + ORR1C2 LTR MaLR 286 384 0 5 649 539 261 109 0 chr4 8423798 8423936 -147206184 - B3A SINE B2 -45 153 1 5 649 191 57 0 79 chr4 8424256 8424294 -147205826 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 649 250 268 24 24 chr4 8424318 8424402 -147205718 + MTEb LTR MaLR 294 377 -2 5 649 4519 127 38 20 chr4 8424685 8425087 -147205033 - RMER17D2 LTR ERVK 0 809 410 5 649 956 25 0 8 chr4 8425087 8425207 -147204913 + (GGAGA)n Simple_repeat Simple_repeat 1 119 0 5 649 4519 127 38 20 chr4 8425207 8425599 -147204521 - RMER17D2 LTR ERVK -400 409 1 5 649 369 182 39 0 chr4 8425891 8425968 -147204152 - B1F SINE Alu 0 149 70 5 649 519 195 59 8 chr4 8425968 8426087 -147204033 - B1F SINE Alu -22 127 3 5 649 330 270 252 20 chr4 8427053 8427204 -147202916 - B4A SINE B4 0 292 107 5 649 246 128 0 0 chr4 8427242 8427281 -147202839 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 5 649 954 42 0 0 chr4 8427295 8427414 -147202706 + (CATA)n Simple_repeat Simple_repeat 2 120 0 5 649 882 254 142 66 chr4 8427415 8427989 -147202131 - MT2A LTR ERVL -61 540 12 5 649 444 246 29 22 chr4 8429005 8429142 -147200978 + B3 SINE B2 77 214 -2 5 649 270 0 0 0 chr4 8429476 8429506 -147200614 + (CATA)n Simple_repeat Simple_repeat 3 32 0 5 649 391 308 19 0 chr4 8429705 8429812 -147200308 + B1F SINE Alu 9 117 -32 5 649 241 336 102 39 chr4 8429812 8429832 -147200288 + ID_B1 SINE B4 90 224 0 5 649 291 311 31 86 chr4 8429887 8430049 -147200071 + Arthur1A DNA Tip100 8 160 -17 5 649 201 74 0 0 chr4 8430091 8430118 -147200002 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 649 1150 88 0 0 chr4 8430126 8430274 -147199846 - B1_Mus1 SINE Alu 0 148 1 6 649 21 0 0 0 chr4 8430274 8430295 -147199825 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 812 142 7 22 chr4 8430305 8430442 -147199678 + B1_Mur4 SINE Alu 9 143 -7 6 649 1145 269 41 16 chr4 8430478 8430698 -147199422 + Lx8 LINE L1 7143 7372 -101 6 649 1911 152 91 9 chr4 8430698 8431037 -147199083 + ORR1B2 LTR MaLR 1 367 0 6 649 1145 269 41 16 chr4 8431037 8431130 -147198990 + Lx8 LINE L1 7373 7464 -9 6 649 210 105 0 0 chr4 8431197 8431235 -147198885 + (A)n Simple_repeat Simple_repeat 1 38 0 6 649 558 268 52 121 chr4 8431478 8431750 -147198370 - B4 SINE B4 -13 279 27 6 649 356 212 100 0 chr4 8431818 8431898 -147198222 - Lx8 LINE L1 -201 7272 7185 6 649 3132 263 80 14 chr4 8431903 8432766 -147197354 - Lx8 LINE L1 -250 7223 6304 6 649 558 0 0 0 chr4 8432784 8432846 -147197274 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 649 567 196 36 0 chr4 8432856 8432968 -147197152 - B1_Mur3 SINE Alu -19 130 15 6 649 239 252 56 83 chr4 8432882 8432990 -147197130 - MT2B LTR ERVL -344 257 153 6 649 533 296 273 10 chr4 8432999 8433284 -147196836 + L1ME1 LINE L1 5495 5854 -325 6 649 294 300 39 29 chr4 8433311 8433414 -147196706 + B1F SINE Alu 39 142 -7 6 649 2778 63 6 0 chr4 8433786 8434136 -147195984 - L1_Mus4 LINE L1 -261 6375 6024 6 649 1829 87 0 29 chr4 8434136 8434292 -147195828 + L1_Mus4 LINE L1 6372 6526 -110 6 649 3094 20 0 0 chr4 8434292 8434638 -147195482 + ORR1A0 LTR MaLR 1 346 0 6 649 1829 87 0 29 chr4 8434638 8434753 -147195367 + L1_Mus4 LINE L1 6527 6635 -1 6 649 25 0 0 0 chr4 8434754 8434779 -147195341 + AT_rich Low_complexity Low_complexity 1 25 0 6 649 285 291 56 91 chr4 8434790 8435021 -147195099 - MLT2B3 LTR ERVL -331 223 1 6 649 240 348 0 0 chr4 8435072 8435141 -147194979 + B1F SINE Alu 27 95 -54 6 649 204 125 0 0 chr4 8435142 8435174 -147194946 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 6 649 389 282 12 91 chr4 8435327 8435514 -147194606 - ORR1E LTR MaLR -195 175 1 6 649 1910 182 87 0 chr4 8435545 8435925 -147194195 - MTC LTR MaLR -8 413 1 6 649 1843 142 74 20 chr4 8436039 8436392 -147193728 + ORR1D1 LTR MaLR 3 374 0 6 649 207 0 0 0 chr4 8436436 8436459 -147193661 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 649 218 290 62 115 chr4 8436461 8436574 -147193546 - PB1D10 SINE Alu -8 109 3 6 649 250 318 16 0 chr4 8436677 8436740 -147193380 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 6 649 210 338 13 51 chr4 8436740 8436755 -147193365 - ID SINE ID -149 75 1 6 649 252 0 0 0 chr4 8436841 8436869 -147193251 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 649 393 103 0 0 chr4 8436869 8436937 -147193183 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 649 474 246 9 0 chr4 8437216 8437326 -147192794 + MTEa LTR MaLR 18 128 -251 6 649 280 327 126 22 chr4 8439031 8439253 -147190867 - MER21B LTR ERV1 -125 738 494 6 649 236 125 46 15 chr4 8439350 8439415 -147190705 + CT-rich Low_complexity Low_complexity 1 67 0 6 649 543 262 99 0 chr4 8439435 8439576 -147190544 + RSINE1 SINE B4 11 165 0 6 649 442 209 0 0 chr4 8439930 8440016 -147190104 - MTC LTR MaLR -5 416 331 6 649 345 161 23 11 chr4 8440020 8440108 -147190012 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 649 3626 15 0 0 chr4 8440127 8440523 -147189597 - MTA_Mm LTR MaLR 0 396 1 6 649 9198 42 2 1 chr4 8440523 8441620 -147188500 - MTA_Mm-int LTR MaLR 0 1098 1 6 649 3644 13 0 0 chr4 8441620 8442016 -147188104 - MTA_Mm LTR MaLR 0 396 1 6 649 243 0 0 0 chr4 8442876 8442903 -147187217 + (A)n Simple_repeat Simple_repeat 1 27 0 6 649 23 0 0 0 chr4 8443586 8443609 -147186511 + AT_rich Low_complexity Low_complexity 1 23 0 6 649 269 113 225 0 chr4 8443610 8443681 -147186439 - Lx4A LINE L1 -2 7056 6970 6 649 606 219 214 22 chr4 8443742 8443924 -147186196 + ID_B1 SINE B4 5 221 -3 6 649 344 264 164 14 chr4 8444033 8444112 -147186008 + MER54A LTR ERVL 153 242 -659 6 649 384 22 0 0 chr4 8444112 8444157 -147185963 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 649 344 264 164 14 chr4 8444157 8444223 -147185897 + MER54A LTR ERVL 243 320 -581 6 649 630 255 48 16 chr4 8444243 8444430 -147185690 - B3 SINE B2 0 216 24 6 649 216 0 0 0 chr4 8444473 8444497 -147185623 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 649 268 196 125 0 chr4 8444511 8444567 -147185553 - B1F2 SINE Alu -66 83 21 6 649 697 316 57 23 chr4 8444746 8445097 -147185023 + MTE2a LTR MaLR 10 343 -36 6 649 185 0 40 0 chr4 8445113 8445138 -147184982 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 649 231 36 0 0 chr4 8445143 8445171 -147184949 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 649 389 256 7 88 chr4 8445628 8445708 -147184412 + B3 SINE B2 3 71 -145 6 649 640 254 29 19 chr4 8445708 8445917 -147184203 - LTRIS5 LTR ERV1 0 447 237 6 649 357 221 45 63 chr4 8446174 8446285 -147183835 + B3 SINE B2 74 182 -34 6 649 960 39 0 0 chr4 8446389 8446517 -147183603 + B1_Mus1 SINE Alu 10 137 -11 6 649 221 0 0 33 chr4 8446519 8446549 -147183571 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 649 358 295 19 19 chr4 8446807 8446914 -147183206 - ID_B1 SINE B4 -34 190 84 6 649 21 0 0 0 chr4 8447187 8447208 -147182912 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 265 247 78 11 chr4 8447248 8447338 -147182782 + ID_B1 SINE B4 128 223 -1 6 649 290 224 26 13 chr4 8447630 8447707 -147182413 + ID4 SINE ID 1 78 -5 6 649 283 261 0 0 chr4 8447897 8447962 -147182158 + PB1D10 SINE Alu 26 90 -27 6 649 747 219 125 32 chr4 8448000 8448311 -147181809 + RLTR15 LTR ERVK 3 342 -17 6 649 192 279 0 0 chr4 8448343 8448404 -147181716 + GA-rich Low_complexity Low_complexity 4 64 0 6 649 713 291 48 0 chr4 8448533 8448722 -147181398 + B3 SINE B2 2 199 -17 6 649 278 315 18 9 chr4 8448785 8448894 -147181226 - PB1D10 SINE Alu -2 115 6 6 649 396 324 69 56 chr4 8448999 8449159 -147180961 - RSINE1 SINE B4 -1 164 3 6 649 213 370 0 0 chr4 8449578 8449659 -147180461 + ID4 SINE ID 3 83 0 6 649 285 278 36 27 chr4 8449896 8450007 -147180113 + ID_B1 SINE B4 89 200 -24 6 649 1323 200 72 19 chr4 8450035 8450356 -147179764 + ORR1D1 LTR MaLR 1 338 -36 6 649 411 84 70 0 chr4 8450362 8450433 -147179687 + RMER19B LTR ERVK 1 76 -826 6 649 1792 139 55 11 chr4 8450682 8451032 -147179088 + RLTR44A LTR ERVK 1 324 -162 6 649 2298 12 0 0 chr4 8451032 8451286 -147178834 - L1Md_T LINE L1 -905 4978 4725 6 649 5321 15 0 0 chr4 8451284 8451882 -147178238 + L1Md_T LINE L1 4989 5586 -297 6 649 8406 28 23 0 chr4 8451882 8452856 -147177264 + L1Md_T LINE L1 5587 6582 0 6 649 547 121 82 10 chr4 8452856 8452966 -147177154 + RLTR44A LTR ERVK 305 497 -5 6 649 535 266 88 58 chr4 8452977 8453038 -147177082 + MER2 DNA MER2_type 87 147 -198 6 649 1738 161 72 123 chr4 8453038 8453443 -147176677 - ORR1C2 LTR MaLR 0 384 1 6 649 535 266 88 58 chr4 8453443 8453509 -147176611 + MER2 DNA MER2_type 148 227 -118 6 649 2300 226 29 42 chr4 8453509 8454128 -147175992 - RMER19C LTR ERVK 0 611 1 6 649 535 266 88 58 chr4 8454128 8454239 -147175881 + MER2 DNA MER2_type 228 333 -12 6 649 405 243 108 57 chr4 8454281 8454438 -147175682 + MLT1E3 LTR MaLR 59 223 -401 6 649 575 122 0 20 chr4 8454574 8454674 -147175446 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 6 649 273 338 0 0 chr4 8454898 8454972 -147175148 + RSINE1 SINE B4 3 76 -89 6 649 24 0 0 0 chr4 8455013 8455037 -147175083 + AT_rich Low_complexity Low_complexity 1 24 0 6 649 503 278 0 0 chr4 8455114 8455222 -147174898 + B3A SINE B2 1 108 -90 6 649 629 318 99 19 chr4 8455253 8455516 -147174604 + MLT1F LTR MaLR 16 299 -249 6 649 426 286 7 22 chr4 8455621 8455757 -147174363 - ID_B1 SINE B4 0 224 91 6 649 463 281 66 0 chr4 8455865 8455986 -147174134 - B1F1 SINE Alu -11 138 10 6 649 253 303 0 0 chr4 8456280 8456346 -147173774 - RSINE1 SINE B4 0 165 100 6 649 240 282 14 14 chr4 8456738 8456751 -147173369 + ID4_ SINE ID 3 74 -9 6 649 261 237 17 0 chr4 8456751 8456810 -147173310 + tRNA-Ala-GCY_ tRNA tRNA 9 68 -7 6 649 627 237 118 80 chr4 8456944 8457206 -147172914 + B4 SINE B4 3 274 -18 6 649 369 0 0 0 chr4 8457208 8457249 -147172871 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 649 394 154 15 0 chr4 8457897 8457962 -147172158 + ID4_ SINE ID 5 70 -13 6 649 1900 167 24 24 chr4 8458085 8458459 -147171661 + ORR1D1 LTR MaLR 1 374 0 6 649 222 283 65 11 chr4 8459695 8459788 -147170332 - PB1D10 SINE Alu -9 108 11 6 649 369 270 0 20 chr4 8459912 8460014 -147170106 + B3A SINE B2 15 114 -84 6 649 24 53 0 0 chr4 8460169 8460207 -147169913 + AT_rich Low_complexity Low_complexity 1 38 0 6 649 519 289 31 4 chr4 8460273 8460506 -147169614 - B4A SINE B4 -3 289 3 6 649 336 351 40 0 chr4 8460578 8460726 -147169394 + RSINE1 SINE B4 3 156 -9 6 649 200 187 221 26 chr4 8461062 8461139 -147168981 - MIRc SINE MIR -175 93 2 6 649 254 242 75 15 chr4 8461874 8461941 -147168179 - RSINE1 SINE B4 -70 95 25 6 649 428 238 133 0 chr4 8461961 8462066 -147168054 - ID_B1 SINE B4 -5 219 101 6 649 477 0 0 0 chr4 8462549 8462602 -147167518 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 649 212 179 0 82 chr4 8463044 8463139 -147166981 + (CGGGG)n Simple_repeat Simple_repeat 1 87 0 6 649 270 0 0 0 chr4 8464194 8464224 -147165896 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 649 189 0 0 0 chr4 8464320 8464341 -147165779 + (A)n Simple_repeat Simple_repeat 1 21 0 6 649 574 230 82 132 chr4 8465878 8465937 -147164183 - B3 SINE B2 -3 213 167 6 649 189 0 0 0 chr4 8465937 8465958 -147164162 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 649 574 230 82 132 chr4 8465958 8466118 -147164002 - B3 SINE B2 -50 166 5 6 649 363 229 65 28 chr4 8466712 8466820 -147163300 - U4 snRNA snRNA -33 112 1 7 649 207 100 0 0 chr4 8467068 8467098 -147163022 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 7 649 297 0 0 0 chr4 8467403 8467436 -147162684 + (CTTG)n Simple_repeat Simple_repeat 3 35 0 7 649 289 71 54 0 chr4 8467436 8467491 -147162629 + (ATTG)n Simple_repeat Simple_repeat 4 62 0 7 649 240 250 119 79 chr4 8467612 8467694 -147162426 - ID_B1 SINE B4 0 224 132 7 649 1533 45 0 0 chr4 8467694 8467870 -147162250 - B2_Mm1a SINE B2 -16 177 2 7 649 240 250 119 79 chr4 8467870 8467913 -147162207 - ID_B1 SINE B4 -93 131 94 7 649 340 257 38 9 chr4 8467925 8468031 -147162089 - PB1D7 SINE Alu 0 120 12 7 649 626 236 16 0 chr4 8468222 8468345 -147161775 - B1_Mur1 SINE Alu -22 127 3 7 649 549 269 202 21 chr4 8468640 8468883 -147161237 - MLT1E2 LTR MaLR 0 627 341 7 649 730 174 13 40 chr4 8469080 8469230 -147160890 - B1_Mur3 SINE Alu -1 148 3 7 649 315 278 39 58 chr4 8469403 8469506 -147160614 - B1F1 SINE Alu -19 101 1 7 649 801 182 28 0 chr4 8469834 8469977 -147160143 + B1_Mur3 SINE Alu 1 147 -2 7 649 982 221 70 67 chr4 8469992 8470307 -147159813 - ORR1D1 LTR MaLR -58 316 1 7 649 180 158 0 0 chr4 8470666 8470704 -147159416 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 7 649 484 260 28 149 chr4 8470772 8470953 -147159167 - B4A SINE B4 -4 288 130 7 649 543 211 26 78 chr4 8471012 8471166 -147158954 - Lx9 LINE L1 -482 7162 7017 7 649 311 294 175 8 chr4 8471612 8471732 -147158388 + B1F SINE Alu 2 141 -8 7 649 1764 192 21 65 chr4 8472414 8472844 -147157276 + MTD LTR MaLR 1 411 -8 7 649 219 213 43 0 chr4 8473598 8473645 -147156475 - PB1D7 SINE Alu -70 50 2 7 649 358 308 0 28 chr4 8474082 8474189 -147155931 - PB1D10 SINE Alu -8 109 6 7 649 232 379 0 28 chr4 8474097 8474203 -147155917 - ID_B1 SINE B4 -49 175 73 7 649 362 321 18 27 chr4 8474290 8474402 -147155718 - PB1D10 SINE Alu -6 111 1 7 649 11914 74 28 10 chr4 8474535 8476246 -147153874 - MusHAL1 LINE L1 -627 2085 344 7 649 1814 133 77 10 chr4 8476246 8476558 -147153562 - ORR1B1 LTR MaLR -61 333 1 7 649 599 245 115 16 chr4 8476810 8477001 -147153119 - B3 SINE B2 -5 211 2 7 649 675 254 65 37 chr4 8477313 8477530 -147152590 + ID_B1 SINE B4 2 224 0 7 649 1208 120 11 11 chr4 8477872 8478058 -147152062 + B2_Mm1a SINE B2 2 187 -6 7 649 1090 138 0 0 chr4 8478169 8478343 -147151777 + B2_Mm2 SINE B2 1 174 -21 7 649 276 261 14 42 chr4 8478890 8478962 -147151158 + BC1_Mm scRNA scRNA 2 71 -81 7 649 409 258 185 77 chr4 8479403 8479765 -147150355 + L1MC3 LINE L1 7154 7554 -231 7 649 300 27 0 0 chr4 8480099 8480136 -147149984 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 649 1257 35 0 0 chr4 8480239 8480384 -147149736 - B1_Mm SINE Alu -1 146 2 7 649 580 210 31 24 chr4 8480605 8480732 -147149388 - B1F SINE Alu -7 142 15 7 649 313 271 54 60 chr4 8480732 8480754 -147149366 - ID_B1 SINE B4 -7 217 70 7 649 381 103 0 0 chr4 8480827 8480895 -147149225 + (T)n Simple_repeat Simple_repeat 1 68 0 7 649 1267 121 16 0 chr4 8481055 8481237 -147148883 - B2_Mm2 SINE B2 -9 186 2 7 649 444 228 59 0 chr4 8481364 8481465 -147148655 - ID_B1 SINE B4 -6 218 112 7 649 188 67 0 32 chr4 8481605 8481636 -147148484 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 7 649 1733 133 179 0 chr4 8482036 8482344 -147147776 + Lx4A LINE L1 6693 7055 -3 7 649 396 103 0 0 chr4 8482740 8482798 -147147322 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 649 253 288 17 0 chr4 8482839 8482898 -147147222 - ID4 SINE ID -11 72 13 7 649 8963 72 30 4 chr4 8482934 8485984 -147144136 - L1_Mus4 LINE L1 -1433 2481 632 7 649 368 212 11 59 chr4 8486249 8486355 -147143765 + PB1D10 SINE Alu 17 117 0 7 649 225 157 0 89 chr4 8486874 8486930 -147143190 + B1F SINE Alu 43 93 -56 7 649 337 326 129 0 chr4 8487052 8487184 -147142936 + RSINE1 SINE B4 17 165 0 7 649 323 146 95 24 chr4 8487932 8488016 -147142104 - MIR SINE MIR -44 218 129 7 649 362 306 21 69 chr4 8488961 8489105 -147141015 + B1F2 SINE Alu 1 137 -12 7 649 1295 182 4 26 chr4 8489174 8489405 -147140715 + URR1A DNA MER1_type 1 226 0 7 649 446 142 8 52 chr4 8489408 8489542 -147140578 + G-rich Low_complexity Low_complexity 4 131 0 7 649 480 18 0 0 chr4 8490090 8490147 -147139973 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 7 649 2644 249 136 40 chr4 8490147 8490976 -147139144 + Lx8 LINE L1 6205 7113 -360 7 649 792 226 86 44 chr4 8491138 8491476 -147138644 - RMER17C LTR ERVK -54 356 5 7 649 1084 201 228 10 chr4 8491527 8491834 -147138286 - ORR1D1 LTR MaLR 0 374 1 7 649 309 328 35 26 chr4 8492196 8492312 -147137808 + LTR33A LTR ERVL 110 226 -305 7 649 337 317 94 38 chr4 8492330 8492543 -147137577 + LTR33A LTR ERVL 296 520 0 7 649 440 95 27 0 chr4 8492621 8492695 -147137425 + (TATG)n Simple_repeat Simple_repeat 1 76 0 7 649 2635 264 159 28 chr4 8492766 8493321 -147136799 - Lx8 LINE L1 -97 7376 6756 7 649 1240 108 27 5 chr4 8493321 8493508 -147136612 + B2_Mm2 SINE B2 3 193 -2 7 649 2635 264 159 28 chr4 8493508 8493940 -147136180 - Lx8 LINE L1 -718 6755 6260 7 649 1412 192 86 45 chr4 8494520 8494583 -147135537 - ORR1D1 LTR MaLR 0 374 317 7 649 802 188 0 20 chr4 8494583 8494735 -147135385 + B1_Mur2 SINE Alu 1 149 0 7 649 1412 192 86 45 chr4 8494735 8495002 -147135118 - ORR1D1 LTR MaLR -58 316 24 7 649 3463 30 2 0 chr4 8495002 8495397 -147134723 - MTA_Mm LTR MaLR 0 396 1 7 649 1412 192 86 45 chr4 8495397 8495424 -147134696 - ORR1D1 LTR MaLR -351 23 1 7 649 1697 171 70 14 chr4 8496026 8496383 -147133737 + ORR1C2 LTR MaLR 8 384 0 7 649 253 233 53 40 chr4 8496410 8496486 -147133634 + B4A SINE B4 2 78 -214 7 649 680 266 117 51 chr4 8496633 8496890 -147133230 - MT2B2 LTR ERVL -8 576 303 7 649 421 162 12 24 chr4 8496869 8496951 -147133169 - MT2B2 LTR ERVL -452 81 1 7 649 322 331 234 14 chr4 8497164 8497719 -147132401 + L2 LINE L2 845 1521 -1898 7 649 498 33 0 0 chr4 8497895 8497955 -147132165 + (CCTG)n Simple_repeat Simple_repeat 1 60 0 7 649 546 231 0 0 chr4 8498172 8498276 -147131844 - ID_B1 SINE B4 -5 219 116 7 649 26 0 0 0 chr4 8498371 8498397 -147131723 + AT_rich Low_complexity Low_complexity 1 26 0 7 649 424 348 45 0 chr4 8498432 8498587 -147131533 + RSINE1 SINE B4 4 165 0 7 649 350 287 0 0 chr4 8499056 8499150 -147130970 - ID_B1 SINE B4 -2 222 129 7 649 223 308 138 0 chr4 8499150 8499186 -147130934 - B1F SINE Alu -1 148 1 7 649 736 187 42 28 chr4 8499202 8499345 -147130775 - B1_Mm SINE Alu 0 147 3 7 649 216 0 0 0 chr4 8499355 8499379 -147130741 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 649 287 282 13 13 chr4 8499387 8499466 -147130654 - PB1D7 SINE Alu -19 101 23 7 649 555 234 108 18 chr4 8500000 8500176 -147129944 - B3 SINE B2 -16 182 1 1 649 256 312 26 13 chr4 8501577 8501655 -147128465 - ID4 SINE ID -4 79 1 2 649 852 303 73 29 chr4 8501874 8502146 -147127974 - B4A SINE B4 -5 287 4 3 649 416 290 50 14 chr4 8502203 8502343 -147127777 + B1F1 SINE Alu 1 145 -4 4 649 1736 146 14 90 chr4 8502434 8502788 -147127332 - ORR1A4 LTR MaLR -2 327 1 5 649 243 0 0 0 chr4 8503656 8503683 -147126437 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 649 438 271 30 23 chr4 8503689 8503821 -147126299 - B1F SINE Alu -2 147 15 7 649 3835 185 114 5 chr4 8505793 8506620 -147123500 - L1_Mur3 LINE L1 -6760 952 36 8 649 338 218 95 29 chr4 8506729 8506866 -147123254 - LTR37A LTR ERV1 -58 368 223 9 649 301 314 39 10 chr4 8507066 8507169 -147122951 + PB1D10 SINE Alu 11 116 -1 1 649 2121 139 3 13 chr4 8507210 8507524 -147122596 - RLTR10E LTR ERVK 0 311 1 1 649 388 242 70 10 chr4 8507545 8507645 -147122475 - PB1D10 SINE Alu -11 106 1 1 649 1551 53 37 0 chr4 8507822 8508010 -147122110 + B2_Mm2 SINE B2 1 195 0 1 649 393 226 116 72 chr4 8508047 8508185 -147121935 - B1F SINE Alu -5 144 1 1 649 22 0 0 0 chr4 8508250 8508272 -147121848 + AT_rich Low_complexity Low_complexity 1 22 0 1 649 188 271 57 0 chr4 8508272 8508342 -147121778 + L3 LINE CR1 1194 1267 -3222 1 649 368 298 49 16 chr4 8508418 8508541 -147121579 - B1F2 SINE Alu -21 128 2 1 649 269 174 90 5 chr4 8508745 8508825 -147121295 + L1M4 LINE L1 5796 5891 -288 1 649 1775 83 209 15 chr4 8510231 8510499 -147119621 - ORR1A3 LTR MaLR -3 323 4 1 649 474 18 0 0 chr4 8510754 8510809 -147119311 + (CATA)n Simple_repeat Simple_repeat 3 57 0 2 649 347 274 11 35 chr4 8511314 8511401 -147118719 + PB1D7 SINE Alu 5 89 -31 2 649 284 231 16 20 chr4 8511600 8511684 -147118436 + B1F SINE Alu 40 148 -1 2 649 1108 150 153 11 chr4 8511690 8511879 -147118241 + B3 SINE B2 1 216 0 2 649 339 255 78 30 chr4 8511972 8512138 -147117982 + L1MD2 LINE L1 947 1120 -5513 2 649 786 268 32 54 chr4 8512330 8512551 -147117569 + B3 SINE B2 1 216 0 2 649 295 289 39 26 chr4 8512606 8512684 -147117436 + ID4 SINE ID 3 81 -2 2 649 931 275 190 44 chr4 8512701 8513068 -147117052 + L1MD2 LINE L1 1445 1805 -4828 2 649 972 205 56 10 chr4 8513068 8513265 -147116855 + B3 SINE B2 3 208 -8 2 649 931 275 190 44 chr4 8513265 8513759 -147116361 + L1MD2 LINE L1 1806 2431 -4202 2 649 367 130 26 88 chr4 8513768 8513864 -147116256 + PB1D7 SINE Alu 3 95 -22 2 649 226 265 145 58 chr4 8514069 8514112 -147116008 + L1MD2 LINE L1 4348 4396 -2141 2 649 261 0 0 0 chr4 8514112 8514141 -147115979 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 649 363 23 0 0 chr4 8514141 8514184 -147115936 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 649 273 265 145 58 chr4 8514184 8514311 -147115809 + L1MD2 LINE L1 4397 4533 -2004 2 649 227 152 22 0 chr4 8514332 8514378 -147115742 + GA-rich Low_complexity Low_complexity 4 50 0 3 649 550 252 87 45 chr4 8514378 8514398 -147115722 + L1MD2 LINE L1 4547 4562 -1975 2 649 234 0 0 0 chr4 8514398 8514424 -147115696 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 3 649 550 252 87 45 chr4 8514424 8514669 -147115451 + L1MD2 LINE L1 4563 4823 -1714 2 649 662 285 38 125 chr4 8514680 8514912 -147115208 + B4A SINE B4 3 230 -62 3 649 819 136 53 8 chr4 8514912 8515045 -147115075 + B1_Mur3 SINE Alu 5 143 -6 3 649 662 285 38 125 chr4 8515045 8515101 -147115019 + B4A SINE B4 231 266 -26 3 649 364 179 0 82 chr4 8515101 8515186 -147114934 + ORR1C1 LTR MaLR 100 177 -201 3 649 638 95 0 31 chr4 8515171 8515269 -147114851 + B1_Mur3 SINE Alu 55 149 0 3 649 379 111 0 0 chr4 8515291 8515345 -147114775 + ORR1C1 LTR MaLR 325 378 0 3 649 387 303 192 33 chr4 8515360 8515964 -147114156 + L1MD2 LINE L1 4957 5656 -881 2 649 480 221 115 0 chr4 8515991 8516113 -147114007 + B1_Mur1 SINE Alu 9 144 -5 3 649 674 294 180 8 chr4 8516160 8516637 -147113483 + L1MD2 LINE L1 5875 6433 -317 2 649 2094 115 48 50 chr4 8516646 8517022 -147113098 - ORR1C2 LTR MaLR 0 384 10 3 649 406 269 49 7 chr4 8517079 8517221 -147112899 + L1MD2 LINE L1 6486 6633 0 2 649 894 249 44 0 chr4 8517245 8517450 -147112670 + B3 SINE B2 3 216 0 3 649 1410 65 0 0 chr4 8517719 8517995 -147112125 + (TAGA)n Simple_repeat Simple_repeat 1 276 0 4 649 669 144 36 0 chr4 8518186 8518297 -147111823 - B3 SINE B2 -101 115 1 4 81 2650 151 42 63 chr4 8519258 8519831 -147110289 - RLTR31_Mm LTR ERVK 0 561 1 4 650 802 250 99 28 chr4 8520440 8520803 -147109317 + MTD LTR MaLR 5 411 -8 4 650 495 238 29 10 chr4 8521193 8521295 -147108825 + PB1D7 SINE Alu 12 115 -5 4 650 242 228 0 0 chr4 8522634 8522691 -147107429 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 650 386 198 191 0 chr4 8522738 8522796 -147107324 - L1MA4 LINE L1 -459 5841 5781 4 650 306 0 0 0 chr4 8522796 8522830 -147107290 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 650 386 207 203 4 chr4 8522830 8522927 -147107193 - L1MA4 LINE L1 -520 5780 5616 4 650 894 159 7 7 chr4 8522970 8523109 -147107011 - B1_Mus1 SINE Alu -9 139 1 4 650 600 262 56 52 chr4 8523290 8523523 -147106597 + L1M1 LINE L1 5483 5716 -584 4 650 21 36 0 0 chr4 8523673 8523701 -147106419 + AT_rich Low_complexity Low_complexity 1 28 0 5 650 22 35 0 0 chr4 8523746 8523775 -147106345 + AT_rich Low_complexity Low_complexity 1 29 0 5 650 1286 55 0 0 chr4 8524296 8524442 -147105678 + B1_Mus2 SINE Alu 2 147 0 5 650 288 130 0 0 chr4 8524442 8524488 -147105632 + (A)n Simple_repeat Simple_repeat 1 46 0 5 650 1231 67 84 6 chr4 8524489 8524655 -147105465 - B2_Mm2 SINE B2 -14 181 3 5 650 208 237 16 33 chr4 8525548 8525609 -147104511 + MIR SINE MIR 200 259 -3 5 650 892 225 65 28 chr4 8526202 8526417 -147103703 - ID_B1 SINE B4 0 224 2 5 650 285 255 192 10 chr4 8526911 8527010 -147103110 + PB1D10 SINE Alu 1 117 0 5 650 815 283 109 78 chr4 8527022 8527379 -147102741 - MTE2b LTR MaLR -4 375 8 5 650 1064 227 0 28 chr4 8527444 8527657 -147102463 - B3 SINE B2 0 216 10 5 650 351 361 15 15 chr4 8529645 8529780 -147100340 - B4A SINE B4 -149 143 9 6 650 562 255 79 21 chr4 8529962 8530202 -147099918 - L1MB7 LINE L1 -14 6170 5917 6 650 1201 124 6 0 chr4 8530202 8530379 -147099741 - B2_Mm2 SINE B2 -17 178 1 6 650 646 199 235 11 chr4 8530698 8530881 -147099239 + URR1A DNA MER1_type 1 224 -2 6 650 291 274 38 0 chr4 8530909 8531015 -147099105 - L1M4 LINE L1 -2163 3983 3874 6 650 441 0 0 0 chr4 8531074 8531123 -147098997 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 650 876 207 0 0 chr4 8531292 8531442 -147098678 - B3A SINE B2 -47 151 2 6 650 23 0 0 0 chr4 8531660 8531683 -147098437 + AT_rich Low_complexity Low_complexity 1 23 0 6 650 24 0 0 0 chr4 8532454 8532478 -147097642 + AT_rich Low_complexity Low_complexity 1 24 0 6 650 24 0 0 0 chr4 8533472 8533496 -147096624 + AT_rich Low_complexity Low_complexity 1 24 0 6 650 257 313 113 5 chr4 8535172 8535272 -147094848 - PB1D10 SINE Alu -39 110 1 7 650 1209 22 0 7 chr4 8535335 8535471 -147094649 + B1_Mus2 SINE Alu 2 136 -11 7 650 251 269 12 49 chr4 8535560 8535642 -147094478 + RSINE1 SINE B4 76 154 -11 7 650 831 258 10 30 chr4 8536002 8536173 -147093947 + B3 SINE B2 7 174 -42 7 650 779 141 104 66 chr4 8536173 8536355 -147093765 + B2_Mm2 SINE B2 2 190 -5 7 650 831 258 10 30 chr4 8536355 8536383 -147093737 + B3 SINE B2 175 202 -14 7 650 246 250 33 0 chr4 8536413 8536473 -147093647 + ID2 SINE ID 5 66 -17 7 650 511 304 0 0 chr4 8536604 8536716 -147093404 + RSINE1 SINE B4 6 117 -48 7 650 351 226 114 50 chr4 8537589 8537729 -147092391 + L1MD3 LINE L1 6626 6774 -1221 7 650 649 101 110 0 chr4 8537756 8537865 -147092255 + B1_Mur4 SINE Alu 30 150 0 7 650 226 297 169 39 chr4 8537889 8538120 -147092000 + L1MD3 LINE L1 6828 7088 -954 7 650 547 280 192 47 chr4 8538763 8539107 -147091013 - MLT1D LTR MaLR 0 505 112 7 650 389 244 139 30 chr4 8539128 8539149 -147090971 - B4 SINE B4 -67 225 164 8 650 528 210 10 10 chr4 8539149 8539250 -147090870 - B1_Mur1 SINE Alu -42 107 7 8 650 389 244 139 30 chr4 8539250 8539280 -147090840 - B4 SINE B4 -67 163 67 8 650 433 230 0 0 chr4 8539776 8539850 -147090270 - ID4 SINE ID -8 75 2 8 650 1157 141 16 5 chr4 8539924 8540110 -147090010 + URR1B DNA MER1_type 38 225 0 8 650 501 293 74 37 chr4 8540121 8540284 -147089836 + B3 SINE B2 48 216 0 8 650 473 248 55 0 chr4 8540404 8540513 -147089607 + PB1D10 SINE Alu 1 115 -2 8 650 238 209 0 0 chr4 8540531 8540574 -147089546 + ID4_ SINE ID 1 43 -40 8 650 318 291 45 18 chr4 8540645 8540757 -147089363 + PB1D7 SINE Alu 1 115 -5 8 650 314 254 14 0 chr4 8540765 8540836 -147089284 + ID4 SINE ID 11 82 -1 8 650 807 312 67 39 chr4 8541241 8541657 -147088463 - L1MA4A LINE L1 -405 5898 5471 8 650 589 243 75 6 chr4 8542351 8542525 -147087595 - MLT1B LTR MaLR -136 254 69 9 650 3297 136 59 0 chr4 8542906 8543451 -147086669 - RMER4B LTR ERVK -8 577 1 9 650 364 182 0 15 chr4 8543452 8543519 -147086601 - MurERV4-int LTR ERVK -4 5256 5191 9 650 8507 164 67 24 chr4 8543507 8544914 -147085206 - MurERV4-int LTR ERVK -3588 1672 201 9 650 525 32 0 0 chr4 8544914 8544977 -147085143 + (GAAAA)n Simple_repeat Simple_repeat 3 65 0 9 650 186 43 0 0 chr4 8544983 8545006 -147085114 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 650 8507 164 67 24 chr4 8545006 8545192 -147084928 - MurERV4-int LTR ERVK -5067 193 4 9 650 3303 127 76 20 chr4 8545194 8545419 -147084701 - RMER4B LTR ERVK 0 585 327 9 650 888 161 29 93 chr4 8545419 8545624 -147084496 - B2_Mm2 SINE B2 -1 194 3 9 650 3303 127 76 20 chr4 8545624 8545952 -147084168 - RMER4B LTR ERVK -259 326 1 9 650 566 321 65 24 chr4 8546043 8546289 -147083831 - MER2 DNA MER2_type -3 342 87 9 650 27715 133 23 7 chr4 8546307 8552440 -147077680 + Lx LINE L1 438 6648 -6 9 650 2161 170 46 29 chr4 8552641 8553064 -147077056 + MT2A LTR ERVL 1 465 -68 9 650 186 272 190 7 chr4 8553122 8553259 -147076861 + MIR SINE MIR 29 190 -72 9 650 16951 101 6 1 chr4 8553666 8556020 -147074100 + L1_Mm LINE L1 3518 5883 0 9 650 1391 87 20 0 chr4 8556025 8556221 -147073899 + L1Md_F2 LINE L1 6379 6578 -4 1 650 5301 67 48 3 chr4 8556221 8556883 -147073237 + L1_Mus1 LINE L1 5876 6567 0 1 650 24 0 0 51 chr4 8556979 8557000 -147073120 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 1256 20 7 0 chr4 8557000 8557146 -147072974 - B1_Mus2 SINE Alu 0 147 1 1 650 24 0 0 51 chr4 8557146 8557163 -147072957 + AT_rich Low_complexity Low_complexity 1 16 0 1 650 306 0 0 0 chr4 8557352 8557386 -147072734 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 650 1251 79 24 20 chr4 8557387 8557597 -147072523 + B2_Mm2 SINE B2 3 210 -6 1 650 519 85 0 0 chr4 8557652 8557734 -147072386 + Lx LINE L1 6571 6652 -2 1 650 228 281 0 0 chr4 8558207 8558264 -147071856 + PB1D10 SINE Alu 35 91 -26 1 650 4158 117 129 11 chr4 8558285 8558944 -147071176 - RMER19A LTR ERVK 0 737 1 1 650 1181 53 9 14 chr4 8559000 8559212 -147070908 + (CA)n Simple_repeat Simple_repeat 1 211 0 1 650 1165 88 0 0 chr4 8559405 8559553 -147070567 + B1_Mus1 SINE Alu 1 148 0 1 650 216 0 0 0 chr4 8559554 8559578 -147070542 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 650 399 56 0 0 chr4 8559764 8559818 -147070302 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 650 462 217 0 0 chr4 8560905 8560988 -147069132 + B1_Mur4 SINE Alu 17 99 -51 1 650 684 0 0 0 chr4 8560998 8561074 -147069046 + (TAAAA)n Simple_repeat Simple_repeat 2 77 0 1 650 270 0 0 0 chr4 8561661 8561691 -147068429 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1 650 198 0 0 0 chr4 8561697 8561719 -147068401 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 650 3417 33 5 0 chr4 8561990 8562384 -147067736 - MTA_Mm LTR MaLR 0 396 1 1 650 398 151 21 28 chr4 8562724 8562867 -147067253 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 650 204 227 0 0 chr4 8563153 8563197 -147066923 + GA-rich Low_complexity Low_complexity 2 45 0 1 650 909 146 254 0 chr4 8563336 8563501 -147066619 - B3 SINE B2 -6 210 4 1 650 23 0 0 0 chr4 8563615 8563638 -147066482 + AT_rich Low_complexity Low_complexity 1 23 0 1 650 256 210 16 0 chr4 8563952 8564014 -147066106 + MTEa LTR MaLR 14 76 -298 1 650 354 275 7 90 chr4 8564185 8564329 -147065791 + MTEa LTR MaLR 248 379 0 1 650 1141 100 72 0 chr4 8564398 8564578 -147065542 + B2_Mm2 SINE B2 2 194 -1 1 650 1840 188 143 22 chr4 8564943 8565311 -147064809 + RLTR20D LTR ERVK 51 477 -91 1 650 483 90 0 0 chr4 8565311 8565389 -147064731 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 650 1840 188 143 22 chr4 8565389 8565482 -147064638 + RLTR20D LTR ERVK 478 568 0 1 650 353 278 127 25 chr4 8565482 8565600 -147064520 + ID_B1 SINE B4 4 133 -91 1 650 1365 78 0 6 chr4 8565941 8566122 -147063998 + B2_Mm2 SINE B2 2 181 -14 1 650 258 244 158 0 chr4 8566132 8566214 -147063906 + Tigger5 DNA MER2_type 2205 2299 -107 1 650 662 208 380 27 chr4 8566216 8566477 -147063643 + ORR1D2 LTR MaLR 5 357 -13 1 650 548 234 0 14 chr4 8566574 8566713 -147063407 + B1_Mur4 SINE Alu 7 143 -7 1 650 471 231 43 29 chr4 8567071 8567209 -147062911 + B1_Mur1 SINE Alu 1 140 -9 1 650 1447 287 59 47 chr4 8567222 8567781 -147062339 + Lx8 LINE L1 6687 7252 -221 1 650 1051 86 13 0 chr4 8567781 8567933 -147062187 + B2_Mm2 SINE B2 2 155 -40 1 650 279 0 0 0 chr4 8567933 8567964 -147062156 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 650 654 13 0 0 chr4 8567978 8568053 -147062067 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 1 650 1279 322 154 38 chr4 8568057 8568692 -147061428 + MTE-int LTR MaLR 702 1408 -172 1 650 454 229 122 137 chr4 8568692 8568889 -147061231 - B3A SINE B2 -4 194 1 1 650 1279 294 82 132 chr4 8568889 8569027 -147061093 + MTE-int LTR MaLR 1409 1487 -93 1 650 464 193 0 196 chr4 8569027 8569175 -147060945 + MTE2a LTR MaLR 2 120 -259 1 650 414 0 0 0 chr4 8569202 8569248 -147060872 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 650 522 0 0 0 chr4 8569248 8569306 -147060814 + (GAA)n Simple_repeat Simple_repeat 3 60 0 1 650 977 153 6 0 chr4 8569306 8569482 -147060638 + GA-rich Low_complexity Low_complexity 2 178 0 1 650 590 217 62 14 chr4 8569502 8569647 -147060473 + MTE2a LTR MaLR 219 370 -9 1 650 543 271 7 0 chr4 8569834 8569974 -147060146 + ID_B1 SINE B4 84 224 0 1 650 207 0 0 0 chr4 8569974 8569997 -147060123 + (A)n Simple_repeat Simple_repeat 1 23 0 1 650 265 237 102 0 chr4 8570411 8570470 -147059650 + ID_B1 SINE B4 149 213 -11 1 650 348 311 19 0 chr4 8570488 8570591 -147059529 + B3A SINE B2 5 109 -89 1 650 342 0 0 0 chr4 8570599 8570637 -147059483 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 650 189 0 0 0 chr4 8570649 8570670 -147059450 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 650 318 307 93 16 chr4 8570750 8570879 -147059241 + B1F1 SINE Alu 9 147 -2 1 650 1410 65 27 0 chr4 8570934 8571118 -147059002 + B2_Mm1a SINE B2 1 189 -4 1 650 221 308 59 104 chr4 8571350 8571571 -147058549 + MIRb SINE MIR 43 253 -15 1 650 339 25 0 0 chr4 8571926 8571966 -147058154 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1 650 1157 71 35 0 chr4 8571977 8572146 -147057974 + B2_Mm2 SINE B2 14 188 -7 1 650 1445 55 44 0 chr4 8572177 8572358 -147057762 - B2_Mm2 SINE B2 -4 191 3 1 650 519 186 19 10 chr4 8572392 8572495 -147057625 + B3 SINE B2 34 137 -79 1 650 514 292 23 8 chr4 8572491 8572622 -147057498 - RSINE1 SINE B4 -22 143 11 1 650 282 193 0 0 chr4 8572664 8572721 -147057399 + G-rich Low_complexity Low_complexity 1 57 0 1 650 1226 34 0 7 chr4 8573418 8573565 -147056555 - B1_Mus2 SINE Alu 0 147 2 1 650 22 0 0 0 chr4 8574603 8574625 -147055495 + GC_rich Low_complexity Low_complexity 1 22 0 1 650 1127 172 23 0 chr4 8576826 8577041 -147053079 + URR1B DNA MER1_type 6 225 0 1 650 672 180 7 61 chr4 8577456 8577604 -147052516 + B1_Mur3 SINE Alu 3 142 -7 1 650 201 108 0 0 chr4 8577611 8577648 -147052472 + (A)n Simple_repeat Simple_repeat 1 37 0 1 650 731 204 192 6 chr4 8577658 8577835 -147052285 + B3 SINE B2 2 211 -5 1 650 1052 205 24 5 chr4 8578011 8578222 -147051898 - B3 SINE B2 -1 215 1 1 650 698 193 163 1 chr4 8578565 8578746 -147051374 - MTD LTR MaLR -14 405 210 1 650 621 125 0 24 chr4 8578777 8578900 -147051220 + (TCC)n Simple_repeat Simple_repeat 1 120 0 1 650 810 136 30 8 chr4 8578929 8579062 -147051058 - B1_Mur4 SINE Alu -10 140 5 1 650 361 221 19 19 chr4 8579065 8579171 -147050949 - MTD LTR MaLR -210 209 104 1 650 642 167 25 0 chr4 8579171 8579291 -147050829 + B1_Mus2 SINE Alu 1 123 -24 1 650 873 129 0 0 chr4 8579291 8579430 -147050690 + (GAA)n Simple_repeat Simple_repeat 3 141 0 1 650 336 265 24 0 chr4 8579430 8579491 -147050629 + polypurine Low_complexity Low_complexity 4 64 0 1 650 1021 116 17 0 chr4 8579491 8579663 -147050457 + (GGAGA)n Simple_repeat Simple_repeat 3 177 0 1 650 336 265 24 0 chr4 8579663 8579684 -147050436 + polypurine Low_complexity Low_complexity 65 87 0 1 650 561 196 6 23 chr4 8579687 8579859 -147050261 + GA-rich Low_complexity Low_complexity 2 170 0 1 650 208 106 0 78 chr4 8579861 8579912 -147050208 + G-rich Low_complexity Low_complexity 1 47 0 1 650 1290 81 29 0 chr4 8580707 8580881 -147049239 + B2_Mm1a SINE B2 1 179 -14 1 650 366 147 271 15 chr4 8580919 8581035 -147049085 + B2_Mm2 SINE B2 17 163 -32 1 650 222 37 0 0 chr4 8581035 8581062 -147049058 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 650 564 152 53 183 chr4 8581317 8581486 -147048634 - B1_Mur2 SINE Alu -2 147 1 1 650 39119 42 0 3 chr4 8581510 8587895 -147042225 - L1Md_T LINE L1 0 6585 121 1 650 320 280 85 0 chr4 8588025 8588143 -147041977 - ID_B1 SINE B4 -5 219 92 1 650 206 259 0 33 chr4 8588255 8588315 -147041805 + CT-rich Low_complexity Low_complexity 3 60 0 1 650 222 262 0 0 chr4 8588259 8588301 -147041819 + polypyrimidine Low_complexity Low_complexity 1 42 0 1 650 813 151 79 0 chr4 8588335 8588461 -147041659 - B1_Mur2 SINE Alu -13 136 1 1 650 302 326 28 21 chr4 8589530 8589674 -147040446 + L1MB4 LINE L1 5726 5870 -313 1 650 229 297 109 0 chr4 8589699 8589763 -147040357 + ID SINE ID 1 71 -153 1 650 580 316 29 29 chr4 8589798 8590075 -147040045 + L1MB4 LINE L1 5903 6179 -1 1 650 755 194 142 16 chr4 8590681 8590864 -147039256 - URR1A DNA MER1_type -16 210 5 1 650 988 70 7 7 chr4 8590997 8591140 -147038980 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 1 650 216 275 56 28 chr4 8591146 8591217 -147038903 - ID4_ SINE ID -10 73 1 1 650 1622 225 39 84 chr4 8591513 8591684 -147038436 - Lx7 LINE L1 0 7696 7533 1 650 1246 41 0 0 chr4 8591684 8591830 -147038290 + B1_Mus2 SINE Alu 2 147 0 1 650 1622 225 39 84 chr4 8591830 8592226 -147037894 - Lx7 LINE L1 -164 7532 7155 1 650 450 300 23 0 chr4 8592227 8592357 -147037763 + B1_Mur1 SINE Alu 9 141 -8 1 650 663 89 18 18 chr4 8592357 8592471 -147037649 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 1 650 23 33 0 0 chr4 8592600 8592630 -147037490 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 1331 87 32 16 chr4 8592632 8592819 -147037301 + B2_Mm2 SINE B2 2 191 -4 1 650 611 218 6 58 chr4 8592826 8592972 -147037148 + B1_Mus1 SINE Alu 1 139 -9 1 650 243 0 0 0 chr4 8592972 8592999 -147037121 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 650 458 231 30 22 chr4 8593018 8593139 -147036981 - PB1 SINE Alu 0 127 6 1 650 1223 101 20 46 chr4 8593198 8593395 -147036725 - B2_Mm2 SINE B2 -3 192 1 1 650 819 135 0 0 chr4 8594656 8594789 -147035331 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 1 650 590 210 31 0 chr4 8594792 8594930 -147035190 - B1_Mm SINE Alu 0 149 1 2 650 302 298 16 116 chr4 8594930 8594959 -147035161 - MT2B LTR ERVL -444 157 142 2 650 216 97 0 0 chr4 8595731 8595762 -147034358 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 2 650 207 0 0 0 chr4 8595847 8595870 -147034250 + (A)n Simple_repeat Simple_repeat 1 23 0 2 650 859 149 6 51 chr4 8595871 8596027 -147034093 + B1_Mur3 SINE Alu 1 149 0 2 650 1347 274 48 46 chr4 8596430 8596905 -147033215 - Lx9 LINE L1 -281 7363 6888 2 650 582 129 11 0 chr4 8596907 8597000 -147033120 + B1_Mus2 SINE Alu 53 146 -1 2 650 954 97 0 7 chr4 8597006 8597140 -147032980 + B1_Mus1 SINE Alu 3 136 -12 2 650 693 0 0 0 chr4 8597140 8597217 -147032903 + (GAA)n Simple_repeat Simple_repeat 2 78 0 2 650 1288 101 28 0 chr4 8597366 8597544 -147032576 + B2_Mm2 SINE B2 2 184 -11 2 650 1140 72 90 0 chr4 8597562 8597728 -147032392 + B2_Mm2 SINE B2 2 182 -13 2 650 315 114 368 19 chr4 8597824 8597930 -147032190 + B2_Mm2 SINE B2 47 189 -6 2 650 407 200 77 60 chr4 8598117 8598234 -147031886 + ID_B1 SINE B4 106 224 0 2 650 809 162 0 0 chr4 8598243 8598379 -147031741 + B1_Mus1 SINE Alu 6 141 -7 2 650 207 0 0 0 chr4 8598380 8598403 -147031717 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 2 650 322 284 106 20 chr4 8598551 8598702 -147031418 - RSINE1 SINE B4 0 165 2 2 650 615 168 9 17 chr4 8598823 8598938 -147031182 + B1_Mur3 SINE Alu 35 148 -1 2 650 234 136 0 0 chr4 8598951 8598995 -147031125 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 650 201 74 0 0 chr4 8600997 8601024 -147029096 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 2 650 604 241 110 14 chr4 8601181 8601372 -147028748 - B3 SINE B2 0 216 27 2 650 234 0 0 0 chr4 8601382 8601408 -147028712 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 650 673 176 40 0 chr4 8601411 8601536 -147028584 - B1_Mus1 SINE Alu -13 135 6 2 650 221 299 49 49 chr4 8601666 8601789 -147028331 + L4 LINE RTE 1198 1320 -709 2 650 439 246 211 0 chr4 8602467 8602609 -147027511 - ID_B1 SINE B4 -51 173 2 2 650 899 160 14 0 chr4 8602968 8603112 -147027008 + B1_Mus2 SINE Alu 1 146 -1 2 650 707 216 0 7 chr4 8603225 8603365 -147026755 - B1_Mur2 SINE Alu -5 144 6 2 650 423 321 56 28 chr4 8603417 8603561 -147026559 - RSINE1 SINE B4 -14 151 4 2 650 291 289 0 12 chr4 8603568 8603652 -147026468 - ID4_ SINE ID 0 83 1 2 650 187 133 44 0 chr4 8604167 8604212 -147025908 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2 650 640 147 0 94 chr4 8604212 8604340 -147025780 - B1_Mur3 SINE Alu -7 142 27 2 650 3409 30 9 0 chr4 8604340 8604772 -147025348 - RLTR10C LTR ERVK 0 436 1 2 650 576 295 89 109 chr4 8604962 8605457 -147024663 + L1MB3 LINE L1 5689 6173 -10 2 650 1166 62 14 0 chr4 8605544 8605688 -147024432 + B1_Mus1 SINE Alu 3 148 0 2 650 259 254 17 0 chr4 8605744 8605803 -147024317 + B1F SINE Alu 90 149 0 2 650 233 224 16 0 chr4 8605802 8605863 -147024257 + B3A SINE B2 9 73 -143 2 650 385 242 0 59 chr4 8606840 8606941 -147023179 + ID_B1 SINE B4 81 175 -49 2 650 377 302 8 49 chr4 8606841 8606963 -147023157 + PB1D10 SINE Alu 1 117 0 2 650 226 329 0 47 chr4 8607006 8607092 -147023028 + ID2 SINE ID 2 83 0 2 650 1120 62 0 46 chr4 8607160 8607312 -147022808 + B1_Mus2 SINE Alu 3 147 0 2 650 484 265 8 8 chr4 8607408 8607526 -147022594 + PB1D7 SINE Alu 1 118 -2 2 650 318 103 265 0 chr4 8607549 8607617 -147022503 + B4A SINE B4 5 90 -202 2 650 266 235 0 19 chr4 8607617 8607721 -147022399 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 2 650 649 250 43 7 chr4 8607721 8607903 -147022217 + B4A SINE B4 72 258 -34 2 650 279 104 0 0 chr4 8608029 8608077 -147022043 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 650 539 253 31 38 chr4 8608204 8608364 -147021756 - RLTR28B LTR ERVL -306 175 17 2 650 209 271 0 17 chr4 8608423 8608483 -147021637 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 650 1404 71 49 6 chr4 8608735 8608918 -147021202 - B2_Mm2 SINE B2 -3 192 2 2 650 751 133 8 0 chr4 8609061 8609181 -147020939 + B1_Mus1 SINE Alu 3 123 -25 2 650 745 263 24 38 chr4 8609700 8609913 -147020207 - B3 SINE B2 -5 211 2 2 650 404 269 0 0 chr4 8609963 8610067 -147020053 - ID_B1 SINE B4 0 224 121 2 650 3406 21 23 0 chr4 8610869 8611256 -147018864 - MTA_Mm LTR MaLR 0 396 1 2 650 910 222 24 5 chr4 8611256 8611464 -147018656 - ID_B1 SINE B4 -12 212 1 2 650 233 359 0 13 chr4 8611497 8611576 -147018544 - ID4_ SINE ID -3 80 3 2 650 433 234 0 31 chr4 8611576 8611673 -147018447 - PB1D10 SINE Alu 0 117 24 2 650 198 0 0 0 chr4 8611680 8611702 -147018418 + (A)n Simple_repeat Simple_repeat 1 22 0 2 650 215 355 156 10 chr4 8611702 8611956 -147018164 + L2b LINE L2 2876 3165 -261 2 650 236 47 0 85 chr4 8612100 8612147 -147017973 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2 650 393 58 0 0 chr4 8612676 8612728 -147017392 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 650 421 325 0 31 chr4 8612738 8612868 -147017252 - RSINE1 SINE B4 -33 132 7 2 650 1385 80 5 31 chr4 8612936 8613130 -147016990 + B2_Mm2 SINE B2 1 189 -6 2 650 186 319 43 0 chr4 8613762 8613831 -147016289 + L2b LINE L2 3352 3423 -3 2 650 548 130 188 36 chr4 8614460 8614572 -147015548 + B3 SINE B2 1 129 -87 2 650 854 56 0 0 chr4 8614829 8614937 -147015183 + B2_Mm1t SINE B2 1 108 -85 2 650 22 0 0 0 chr4 8616328 8616350 -147013770 + AT_rich Low_complexity Low_complexity 1 22 0 2 650 36 62 0 0 chr4 8617347 8617411 -147012709 + GC_rich Low_complexity Low_complexity 1 64 0 2 650 217 196 58 10 chr4 8617494 8617597 -147012523 + (CG)n Simple_repeat Simple_repeat 2 109 0 2 650 366 61 0 0 chr4 8617600 8617649 -147012471 + (CGG)n Simple_repeat Simple_repeat 2 50 0 2 650 21 36 0 0 chr4 8617936 8617964 -147012156 + GC_rich Low_complexity Low_complexity 1 28 0 2 650 24 67 0 0 chr4 8618097 8618142 -147011978 + GC_rich Low_complexity Low_complexity 1 45 0 2 650 39 0 0 0 chr4 8618157 8618196 -147011924 + GC_rich Low_complexity Low_complexity 1 39 0 2 650 57 85 0 0 chr4 8618379 8618520 -147011600 + GC_rich Low_complexity Low_complexity 1 141 0 2 650 25 31 0 0 chr4 8618603 8618635 -147011485 + GC_rich Low_complexity Low_complexity 1 32 0 2 650 200 77 18 55 chr4 8619097 8619152 -147010968 + (CGGGG)n Simple_repeat Simple_repeat 2 54 0 2 650 28 0 0 0 chr4 8619657 8619685 -147010435 + AT_rich Low_complexity Low_complexity 1 28 0 2 650 21 36 0 0 chr4 8619696 8619724 -147010396 + AT_rich Low_complexity Low_complexity 1 28 0 2 650 243 0 0 0 chr4 8620849 8620876 -147009244 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 650 234 0 0 0 chr4 8624465 8624491 -147005629 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2 650 22 35 0 0 chr4 8624634 8624663 -147005457 + AT_rich Low_complexity Low_complexity 1 29 0 2 650 663 155 329 0 chr4 8624663 8624824 -147005296 - B3 SINE B2 -1 215 2 2 650 281 261 0 104 chr4 8625894 8625971 -147004149 - RSINE1 SINE B4 0 165 97 2 650 240 288 61 0 chr4 8625960 8626026 -147004094 - tRNA-Ala-GCA tRNA tRNA -2 73 4 2 650 478 286 104 60 chr4 8626031 8626232 -147003888 - MIRb SINE MIR -45 223 10 2 650 730 233 9 30 chr4 8626269 8626470 -147003650 + B3 SINE B2 3 194 -1 2 650 511 310 19 6 chr4 8626917 8627076 -147003044 - RSINE1 SINE B4 -2 163 3 2 650 224 351 64 76 chr4 8627734 8627984 -147002136 - MIRb SINE MIR -4 264 18 2 650 490 322 34 0 chr4 8628816 8628962 -147001158 + RSINE1 SINE B4 1 151 -14 2 650 484 235 114 8 chr4 8629100 8629251 -147000869 + B3 SINE B2 2 171 -24 2 650 919 94 32 45 chr4 8629344 8629500 -147000620 - B2_Mm2 SINE B2 -9 186 33 2 650 840 244 48 19 chr4 8629564 8629773 -147000347 + B3 SINE B2 1 215 -1 2 650 210 91 0 0 chr4 8631020 8631053 -146999067 + (TGAG)n Simple_repeat Simple_repeat 2 34 0 2 650 225 224 0 0 chr4 8632430 8632479 -146997641 - L1_Mus1 LINE L1 -408 6159 6111 2 650 224 281 45 68 chr4 8633407 8633495 -146996625 + PB1D10 SINE Alu 14 99 -18 2 650 233 324 42 7 chr4 8633975 8634083 -146996037 + MIRb SINE MIR 15 124 -138 2 650 198 0 0 0 chr4 8634443 8634465 -146995655 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 650 886 55 0 8 chr4 8634650 8634777 -146995343 - L1Md_F2 LINE L1 -1 6581 6456 2 650 268 393 15 0 chr4 8635061 8635196 -146994924 + (CACG)n Simple_repeat Simple_repeat 4 140 0 2 650 22 35 0 0 chr4 8635463 8635492 -146994628 + AT_rich Low_complexity Low_complexity 1 29 0 2 650 410 249 182 18 chr4 8636050 8636254 -146993866 + B4A SINE B4 2 248 -44 2 650 780 197 30 0 chr4 8637115 8637247 -146992873 - B1_Mur1 SINE Alu -12 137 2 2 650 678 201 29 0 chr4 8637342 8637481 -146992639 - B1_Mus2 SINE Alu -2 145 3 2 650 342 153 61 0 chr4 8638356 8638454 -146991666 + (TGAA)n Simple_repeat Simple_repeat 4 107 0 2 650 258 32 0 0 chr4 8638713 8638744 -146991376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 650 1164 52 0 0 chr4 8638745 8638881 -146991239 - B1_Mus1 SINE Alu -10 138 3 3 650 180 0 0 0 chr4 8638892 8638912 -146991208 + (T)n Simple_repeat Simple_repeat 1 20 0 3 650 501 281 240 31 chr4 8639410 8639583 -146990537 - MLT1H LTR MaLR -5 544 313 3 650 246 62 0 0 chr4 8639583 8639615 -146990505 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 650 501 281 240 31 chr4 8639615 8639695 -146990425 - MLT1H LTR MaLR -237 312 239 3 650 451 194 105 136 chr4 8640988 8641032 -146989088 - B2_Mm2 SINE B2 -10 185 150 3 650 398 69 17 0 chr4 8641032 8641090 -146989030 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 650 639 194 105 136 chr4 8641090 8641236 -146988884 - B3A SINE B2 -46 149 1 3 650 422 205 312 24 chr4 8641295 8641420 -146988700 - RSINE1 SINE B4 -1 164 4 3 650 786 225 27 46 chr4 8641795 8642014 -146988106 + B3 SINE B2 1 215 -1 3 650 25 31 0 0 chr4 8643039 8643071 -146987049 + AT_rich Low_complexity Low_complexity 1 32 0 3 650 204 97 0 0 chr4 8643518 8643549 -146986571 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 3 650 225 94 0 0 chr4 8644010 8644042 -146986078 + (TCCCC)n Simple_repeat Simple_repeat 2 33 0 3 650 1140 50 0 0 chr4 8644085 8644226 -146985894 - B1_Mus1 SINE Alu 0 148 8 3 650 322 242 45 8 chr4 8644125 8644258 -146985862 - ORR1B1-int LTR MaLR -755 754 617 3 650 2822 47 6 3 chr4 8644267 8644611 -146985509 - L1_Mus1 LINE L1 -4 6563 6219 3 650 230 246 35 0 chr4 8644802 8644859 -146985261 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 3 650 2287 284 89 85 chr4 8644927 8645494 -146984626 - Lx8 LINE L1 -119 7354 6769 3 650 1056 83 0 0 chr4 8645494 8645627 -146984493 - B1_Mus1 SINE Alu -14 134 2 3 650 944 189 119 5 chr4 8645634 8645836 -146984284 - URR1B DNA MER1_type 0 225 1 3 650 2287 284 89 85 chr4 8645836 8646418 -146983702 - Lx8 LINE L1 -705 6768 6192 3 650 223 56 93 0 chr4 8646422 8646476 -146983644 + (TATG)n Simple_repeat Simple_repeat 1 59 0 3 650 234 343 56 73 chr4 8646961 8647140 -146982980 - B3A SINE B2 -18 180 5 3 650 619 302 59 39 chr4 8647305 8647591 -146982529 - B4 SINE B4 0 292 1 3 650 246 59 0 0 chr4 8647937 8647944 -146982176 + (A)n Simple_repeat Simple_repeat 1 7 0 3 650 1223 42 0 0 chr4 8647944 8648088 -146982032 + B1_Mus1 SINE Alu 5 148 0 3 650 246 59 0 0 chr4 8648088 8648114 -146982006 + (A)n Simple_repeat Simple_repeat 1 26 0 3 650 270 272 29 19 chr4 8648338 8648443 -146981677 + L1MA9 LINE L1 6167 6272 -40 3 650 332 105 35 0 chr4 8649007 8649064 -146981056 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 650 225 181 68 57 chr4 8649065 8649153 -146980967 - L1MB2 LINE L1 -218 5953 5865 3 650 820 149 7 34 chr4 8649170 8649316 -146980804 - B1_Mur3 SINE Alu -1 148 7 3 650 467 263 6 49 chr4 8649174 8649338 -146980782 - ID_B1 SINE B4 0 224 68 3 651 251 243 43 0 chr4 8651524 8651594 -146978526 - L1MC5 LINE L1 -187 7774 7702 3 651 200 289 48 76 chr4 8653955 8654060 -146976060 + L2a LINE L2 3277 3378 -48 3 651 1147 112 71 0 chr4 8656639 8656808 -146973312 + B2_Mm2 SINE B2 1 181 -14 3 651 639 37 0 0 chr4 8656839 8656921 -146973199 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 3 651 192 77 0 0 chr4 8658587 8658613 -146971507 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 651 376 282 137 109 chr4 8658728 8659094 -146971026 - Charlie1a DNA MER1_type -21 1434 1059 3 651 369 169 33 5 chr4 8659125 8659216 -146970904 - PB1 SINE Alu -2 125 45 3 651 1472 240 99 76 chr4 8659249 8659417 -146970703 - Charlie1a DNA MER1_type -443 1012 858 3 651 723 261 38 33 chr4 8659417 8659445 -146970675 - B3 SINE B2 -5 211 187 3 651 192 158 0 0 chr4 8659445 8659483 -146970637 + (CATG)n Simple_repeat Simple_repeat 3 40 0 3 651 723 261 38 33 chr4 8659483 8659664 -146970456 - B3 SINE B2 -30 186 1 3 651 441 0 0 0 chr4 8659667 8659716 -146970404 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 651 1472 240 99 76 chr4 8659716 8660080 -146970040 - Charlie1a DNA MER1_type -598 857 464 3 651 279 79 0 0 chr4 8660891 8660929 -146969191 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 3 651 437 250 0 0 chr4 8660937 8661021 -146969099 - B4 SINE B4 -206 86 3 3 651 393 22 0 0 chr4 8661790 8661836 -146968284 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 651 518 276 182 12 chr4 8661836 8662001 -146968119 - B3 SINE B2 -23 193 1 3 651 206 213 0 0 chr4 8662039 8662086 -146968034 + C-rich Low_complexity Low_complexity 5 51 0 3 651 300 172 22 60 chr4 8663210 8663395 -146966725 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 651 498 143 26 48 chr4 8663397 8663823 -146966297 + (CATA)n Simple_repeat Simple_repeat 1 416 0 3 651 822 159 26 58 chr4 8664106 8664260 -146965860 + B1_Mur2 SINE Alu 1 149 0 3 651 1947 161 34 3 chr4 8664404 8664727 -146965393 - ORR1A1 LTR MaLR -8 338 6 3 651 518 222 132 21 chr4 8664727 8664916 -146965204 + B3 SINE B2 5 214 -2 3 651 312 296 165 16 chr4 8665186 8665313 -146964807 - B1F1 SINE Alu -3 146 1 3 651 232 241 76 92 chr4 8665313 8665365 -146964755 - MT2B2 LTR ERVL -413 171 122 3 651 231 328 148 7 chr4 8665492 8665627 -146964493 - MIR SINE MIR -22 240 87 3 651 242 150 0 0 chr4 8666470 8666510 -146963610 + ID SINE ID 3 42 -182 3 651 209 157 0 38 chr4 8667067 8667120 -146963000 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 651 1208 68 0 0 chr4 8667122 8667269 -146962851 + B1_Mus2 SINE Alu 1 147 0 3 651 680 116 18 0 chr4 8667273 8667385 -146962735 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 3 651 230 207 25 8 chr4 8667561 8667619 -146962501 + B1_Mur4 SINE Alu 84 142 -8 3 651 297 0 0 0 chr4 8667622 8667655 -146962465 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 3 651 443 228 29 38 chr4 8667767 8667872 -146962248 - B1_Mur2 SINE Alu -11 138 35 3 651 569 218 183 114 chr4 8667920 8668122 -146961998 - B3 SINE B2 0 216 1 3 651 403 161 59 66 chr4 8669028 8669134 -146960986 - B1_Mur4 SINE Alu 0 120 9 3 651 1937 139 118 39 chr4 8669865 8670255 -146959865 + MTC LTR MaLR 1 421 0 3 651 374 100 17 0 chr4 8670319 8670379 -146959741 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 651 937 35 17 0 chr4 8670381 8670497 -146959623 - B1_Mus2 SINE Alu -5 142 25 3 651 27 29 0 0 chr4 8670503 8670537 -146959583 + AT_rich Low_complexity Low_complexity 1 34 0 3 651 1007 149 60 0 chr4 8670537 8670705 -146959415 - B3 SINE B2 -4 212 35 3 651 447 19 0 0 chr4 8670848 8670900 -146959220 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 651 302 55 0 179 chr4 8670932 8670999 -146959121 - PB1D9 SINE Alu -64 56 2 3 651 653 181 17 109 chr4 8671010 8671184 -146958936 - B3 SINE B2 -2 214 57 3 651 209 128 0 25 chr4 8671184 8671224 -146958896 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 651 210 37 0 0 chr4 8671925 8671952 -146958168 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 651 224 329 39 26 chr4 8673412 8673490 -146956630 - ID4 SINE ID -4 79 1 3 651 665 199 28 28 chr4 8673539 8673684 -146956436 - B1_Mur2 SINE Alu -4 145 1 3 651 297 237 70 30 chr4 8674055 8674155 -146955965 + MER3 DNA MER1_type 82 185 -24 3 651 181 324 26 39 chr4 8675542 8675619 -146954501 + L3 LINE CR1 4403 4478 -11 3 651 391 234 121 8 chr4 8681943 8682054 -146948066 + PB1D9 SINE Alu 2 119 -1 3 651 235 316 96 8 chr4 8682493 8682621 -146947499 + MIRc SINE MIR 37 182 -94 3 651 247 212 79 88 chr4 8682885 8682999 -146947121 - RLTR25B LTR ERVK -461 567 455 3 651 669 140 93 0 chr4 8682934 8683041 -146947079 - B1_Mur4 SINE Alu -32 118 2 3 651 291 267 142 47 chr4 8682946 8683052 -146947068 - B4 SINE B4 -98 194 79 3 651 270 81 0 0 chr4 8683054 8683091 -146947029 + (A)n Simple_repeat Simple_repeat 1 37 0 3 651 216 0 0 0 chr4 8684143 8684167 -146945953 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 651 215 31 31 0 chr4 8684255 8684287 -146945833 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 651 1260 48 0 0 chr4 8684288 8684435 -146945685 - B1_Mus2 SINE Alu 0 147 1 3 651 523 294 33 22 chr4 8685243 8685424 -146944696 - B3A SINE B2 -15 183 1 3 651 342 217 139 19 chr4 8685437 8685545 -146944575 - B1F SINE Alu -7 142 22 3 651 252 0 0 0 chr4 8685792 8685820 -146944300 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 651 180 0 0 0 chr4 8685873 8685893 -146944227 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 651 234 62 0 0 chr4 8685948 8685980 -146944140 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 651 285 29 0 0 chr4 8686035 8686069 -146944051 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 651 213 39 0 0 chr4 8686124 8686150 -146943970 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 651 267 31 0 0 chr4 8686205 8686237 -146943883 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 651 483 18 0 0 chr4 8686363 8686419 -146943701 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 651 375 83 27 27 chr4 8687469 8687543 -146942577 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 3 651 817 200 113 51 chr4 8688152 8688347 -146941773 - B3 SINE B2 0 216 10 3 651 395 306 100 40 chr4 8689299 8689449 -146940671 + MIRb SINE MIR 109 267 -1 3 651 285 29 0 0 chr4 8689578 8689612 -146940508 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 3 651 1175 41 0 33 chr4 8689612 8689762 -146940358 - B1_Mus2 SINE Alu -1 146 2 3 651 192 40 0 0 chr4 8690631 8690656 -146939464 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 651 617 160 124 31 chr4 8690658 8690787 -146939333 - B1_Mus1 SINE Alu -6 142 2 3 651 244 0 56 0 chr4 8691611 8691647 -146938473 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 651 1554 309 136 54 chr4 8693307 8694578 -146935542 - Charlie1a DNA MER1_type -57 1398 24 3 651 253 310 11 75 chr4 8694691 8694785 -146935335 - MTEa LTR MaLR -151 228 141 3 651 692 186 15 8 chr4 8694786 8694916 -146935204 - B1_Mur1 SINE Alu -18 131 1 3 651 362 0 62 0 chr4 8694925 8694973 -146935147 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 651 449 245 96 1 chr4 8694973 8695089 -146935031 - MTE-int LTR MaLR -40 1540 1390 4 651 669 296 40 128 chr4 8695089 8695387 -146934733 + B4A SINE B4 1 272 -20 4 651 1968 275 141 13 chr4 8695451 8695718 -146934402 - MTE-int LTR MaLR -166 1414 1136 4 651 486 0 0 0 chr4 8695718 8695772 -146934348 + (CAG)n Simple_repeat Simple_repeat 3 56 0 4 651 1968 275 141 13 chr4 8695772 8696277 -146933843 - MTE-int LTR MaLR -445 1135 544 4 651 280 357 12 23 chr4 8696468 8696505 -146933615 + ID SINE ID 48 83 -141 4 651 249 266 133 41 chr4 8696505 8696603 -146933517 + B1F SINE Alu 3 109 -40 4 651 302 329 144 15 chr4 8696673 8696841 -146933279 + B4A SINE B4 26 206 -86 4 651 287 260 38 25 chr4 8697014 8697093 -146933027 - PB1D7 SINE Alu -5 115 36 4 651 862 273 154 51 chr4 8697562 8697894 -146932226 - MTEb LTR MaLR -13 366 1 4 651 204 201 50 65 chr4 8698401 8698482 -146931638 + MIRm SINE MIR 105 191 -71 4 651 281 249 71 180 chr4 8699067 8699278 -146930842 - MER33 DNA MER1_type -94 230 43 4 651 1227 48 0 0 chr4 8700500 8700645 -146929475 + B1_Mus2 SINE Alu 3 147 0 4 651 255 292 297 12 chr4 8701821 8702154 -146927966 - L2 LINE L2 -982 2437 1991 4 651 339 25 0 0 chr4 8702154 8702194 -146927926 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 651 255 292 297 12 chr4 8702194 8702342 -146927778 - L2 LINE L2 -1429 1990 1820 4 651 333 0 0 0 chr4 8704071 8704108 -146926012 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 651 234 0 0 0 chr4 8705250 8705276 -146924844 + (T)n Simple_repeat Simple_repeat 1 26 0 4 651 740 303 148 26 chr4 8705514 8705981 -146924139 - MLT1E1A LTR MaLR -13 667 144 4 651 22 0 0 0 chr4 8707046 8707068 -146923052 + AT_rich Low_complexity Low_complexity 1 22 0 4 651 1026 86 0 19 chr4 8707386 8707711 -146922409 + (TG)n Simple_repeat Simple_repeat 1 318 0 4 651 264 291 110 37 chr4 8707944 8708015 -146922105 + ID SINE ID 1 83 -141 4 651 427 198 31 9 chr4 8708015 8708127 -146921993 + PB1D10 SINE Alu 3 125 -2 4 651 202 103 50 25 chr4 8708172 8708212 -146921908 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 651 255 125 0 0 chr4 8710741 8710781 -146919339 + (CTG)n Simple_repeat Simple_repeat 2 41 0 4 651 319 209 15 0 chr4 8710791 8710858 -146919262 - ID4 SINE ID -14 69 2 4 651 270 136 0 0 chr4 8711856 8711900 -146918220 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 4 651 214 297 13 26 chr4 8714097 8714173 -146915947 - L2c LINE L2 -3 3384 3310 4 651 216 0 0 0 chr4 8714782 8714806 -146915314 + (T)n Simple_repeat Simple_repeat 1 24 0 4 651 240 35 0 0 chr4 8718044 8718073 -146912047 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 651 665 226 8 22 chr4 8719036 8719206 -146910914 + B3 SINE B2 1 169 -26 4 651 249 33 0 0 chr4 8719206 8719236 -146910884 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 4 651 646 269 21 57 chr4 8719236 8719258 -146910862 + B2_Mm2 SINE B2 170 186 -9 4 651 714 67 0 0 chr4 8719409 8719499 -146910621 - B2_Mm2 SINE B2 -105 90 1 4 651 788 196 0 21 chr4 8719830 8719971 -146910149 - B1_Mur3 SINE Alu -11 138 1 4 651 1246 295 116 21 chr4 8720111 8720331 -146909789 - L1MA4 LINE L1 -158 5998 5783 4 651 521 55 14 0 chr4 8720331 8720404 -146909716 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 651 1246 281 162 30 chr4 8720404 8721064 -146909056 - L1MA4 LINE L1 -518 5782 5012 4 651 914 189 183 0 chr4 8721064 8721255 -146908865 + URR1A DNA MER1_type 1 226 0 4 651 776 265 218 56 chr4 8721255 8721764 -146908356 - L1MA4 LINE L1 -1132 5011 4357 4 651 419 186 22 65 chr4 8721765 8721778 -146908342 + B4 SINE B4 80 88 -204 4 651 618 149 37 9 chr4 8721778 8721886 -146908234 + PB1D10 SINE Alu 2 112 -5 4 651 304 272 92 40 chr4 8721941 8722168 -146907952 - L1MA4 LINE L1 -1781 4362 4093 4 651 441 0 0 0 chr4 8722183 8722232 -146907888 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 651 278 259 10 124 chr4 8722235 8722253 -146907867 + MT2B LTR ERVL 152 158 -443 4 651 470 237 10 0 chr4 8722253 8722350 -146907770 + PB1D9 SINE Alu 3 100 -20 4 651 323 293 30 0 chr4 8722384 8722483 -146907637 - L1MA4 LINE L1 -2081 4059 3958 4 651 289 322 33 11 chr4 8722778 8722869 -146907251 + PB1D7 SINE Alu 2 94 -26 4 651 617 289 66 0 chr4 8722873 8723039 -146907081 + B4A SINE B4 31 207 -85 4 651 212 135 54 0 chr4 8724064 8724101 -146906019 + CT-rich Low_complexity Low_complexity 4 42 0 4 651 223 68 91 0 chr4 8724101 8724145 -146905975 + C-rich Low_complexity Low_complexity 6 53 0 4 651 721 139 70 0 chr4 8724441 8724556 -146905564 + B1_Mur4 SINE Alu 20 142 -8 4 651 213 39 0 0 chr4 8724576 8724602 -146905518 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 651 274 307 135 39 chr4 8725836 8725992 -146904128 - MIRb SINE MIR -57 211 41 4 651 23 0 0 0 chr4 8727029 8727052 -146903068 + AT_rich Low_complexity Low_complexity 1 23 0 4 651 25 51 0 0 chr4 8727092 8727131 -146902989 + AT_rich Low_complexity Low_complexity 1 39 0 4 651 1053 239 40 54 chr4 8728990 8729302 -146900818 - B4 SINE B4 0 292 2 4 651 27 0 0 0 chr4 8729305 8729332 -146900788 + AT_rich Low_complexity Low_complexity 1 27 0 4 651 506 229 5 65 chr4 8729794 8729951 -146900169 - B3 SINE B2 -43 150 9 4 651 353 187 308 0 chr4 8730088 8730179 -146899941 + PB1D9 SINE Alu 2 120 0 4 651 644 220 42 14 chr4 8731494 8731637 -146898483 + B1_Mur1 SINE Alu 2 148 -1 4 651 253 295 25 25 chr4 8731707 8731787 -146898333 - ID4 SINE ID -3 80 1 4 651 228 271 51 0 chr4 8733620 8733679 -146896441 + PB1D10 SINE Alu 54 115 -2 4 651 261 0 0 0 chr4 8734422 8734451 -146895669 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 651 623 257 76 27 chr4 8734526 8734710 -146895410 + B3A SINE B2 1 193 -5 4 651 1304 163 18 9 chr4 8735441 8735664 -146894456 - URR1A DNA MER1_type -1 225 1 4 651 988 74 0 29 chr4 8737197 8737336 -146892784 + B1_Mm SINE Alu 13 147 0 4 651 216 0 0 0 chr4 8739075 8739099 -146891021 + (TTTAG)n Simple_repeat Simple_repeat 3 26 0 4 651 237 227 106 0 chr4 8740230 8740296 -146889824 - L1MC4a LINE L1 -1034 7008 6936 4 651 378 0 0 0 chr4 8740686 8740728 -146889392 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 4 651 593 127 244 8 chr4 8740769 8740888 -146889232 + B1_Mus1 SINE Alu 1 147 -1 4 651 262 242 50 40 chr4 8741094 8741193 -146888927 - L1MC4a LINE L1 -1713 6169 6070 4 651 198 0 0 0 chr4 8741597 8741619 -146888501 + (A)n Simple_repeat Simple_repeat 1 22 0 4 651 275 282 153 14 chr4 8741696 8741840 -146888280 - RSINE1 SINE B4 0 165 2 4 651 295 314 105 0 chr4 8742164 8742269 -146887851 + RSINE1 SINE B4 8 123 -42 4 651 245 324 0 0 chr4 8743073 8743144 -146886976 + (TATG)n Simple_repeat Simple_repeat 4 74 0 4 651 995 204 109 23 chr4 8743406 8743662 -146886458 - MTD LTR MaLR -141 278 1 4 651 842 272 108 71 chr4 8743673 8744025 -146886095 - MTD-int LTR MaLR -3 1255 891 4 651 871 192 88 26 chr4 8744612 8744804 -146885316 - URR1A DNA MER1_type -21 205 2 4 651 2124 242 36 42 chr4 8744805 8745611 -146884509 - MTD-int LTR MaLR -364 894 7 4 651 913 237 287 10 chr4 8745617 8745920 -146884200 - MTD LTR MaLR 0 396 10 4 651 331 358 128 26 chr4 8745999 8746498 -146883622 - L1M5 LINE L1 -1344 4802 4253 4 651 324 0 0 0 chr4 8746512 8746548 -146883572 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 651 3168 42 42 3 chr4 8746782 8747165 -146882955 - L1_Mus1 LINE L1 0 6567 6170 4 651 643 219 8 8 chr4 8747396 8747516 -146882604 - RSINE1 SINE B4 -43 122 3 4 651 286 301 0 0 chr4 8748506 8748579 -146881541 - ID4_ SINE ID -9 74 2 4 651 316 278 58 58 chr4 8748579 8748682 -146881438 - PB1D10 SINE Alu -1 116 14 4 651 21 0 0 0 chr4 8749078 8749099 -146881021 + AT_rich Low_complexity Low_complexity 1 21 0 4 651 21 0 0 0 chr4 8749267 8749288 -146880832 + AT_rich Low_complexity Low_complexity 1 21 0 4 651 180 0 0 0 chr4 8749418 8749438 -146880682 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 651 288 0 0 0 chr4 8754554 8754586 -146875534 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 651 240 156 176 59 chr4 8756024 8756092 -146874028 + MER66B LTR ERV1 350 425 -61 4 651 207 100 0 0 chr4 8756129 8756159 -146873961 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 4 651 394 243 199 0 chr4 8756174 8756310 -146873810 - RSINE1 SINE B4 0 165 3 4 651 243 324 59 59 chr4 8757157 8757275 -146872845 + Charlie17a DNA MER1_type 15 132 -87 4 651 509 230 10 0 chr4 8758624 8758636 -146871484 + ID SINE ID 70 82 -142 4 651 463 252 39 0 chr4 8758636 8758739 -146871381 + PB1D10 SINE Alu 1 107 -10 4 651 204 170 0 41 chr4 8758783 8758832 -146871288 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 4 651 414 57 0 0 chr4 8758895 8758948 -146871172 + (TAGG)n Simple_repeat Simple_repeat 4 56 0 4 651 597 330 11 6 chr4 8761931 8762114 -146868006 + ID_B1 SINE B4 5 188 -36 4 651 234 0 0 0 chr4 8763099 8763125 -146866995 + (A)n Simple_repeat Simple_repeat 1 26 0 4 651 24 0 0 0 chr4 8763957 8763981 -146866139 + AT_rich Low_complexity Low_complexity 1 24 0 4 651 226 67 22 22 chr4 8765384 8765430 -146864690 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 651 1005 128 0 7 chr4 8766087 8766236 -146863884 - B1_Mur4 SINE Alu 0 150 3 4 651 233 29 0 29 chr4 8767009 8767044 -146863076 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 651 1155 38 0 0 chr4 8767046 8767179 -146862941 - B1_Mm SINE Alu -12 135 3 4 651 492 262 85 10 chr4 8767208 8767474 -146862646 - MLT1A0 LTR MaLR -16 374 16 4 651 506 223 26 9 chr4 8767794 8767907 -146862213 - PB1D9 SINE Alu -1 119 5 4 651 281 47 0 23 chr4 8767921 8767965 -146862155 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 4 651 1256 14 0 0 chr4 8767967 8768106 -146862014 - B1_Mus1 SINE Alu -9 139 1 4 651 308 355 56 25 chr4 8768971 8769257 -146860863 - L1MB7 LINE L1 -57 6127 5833 4 651 186 71 0 0 chr4 8769259 8769287 -146860833 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 651 582 42 0 0 chr4 8769287 8769358 -146860762 - B1_Mus2 SINE Alu -9 138 68 5 651 325 303 103 21 chr4 8769435 8769580 -146860540 - L1M5 LINE L1 -390 5774 5618 5 651 1055 299 57 18 chr4 8769911 8770350 -146859770 - L1MA5A LINE L1 -366 5931 5476 5 651 243 293 103 40 chr4 8774953 8775127 -146854993 - L1M3 LINE L1 -273 5910 5726 5 651 365 212 12 12 chr4 8775291 8775372 -146854748 - B1_Mur2 SINE Alu -52 97 17 5 651 387 268 64 52 chr4 8776829 8777002 -146853118 + MIRc SINE MIR 88 262 -6 5 651 23 0 0 0 chr4 8780294 8780317 -146849803 + AT_rich Low_complexity Low_complexity 1 23 0 5 652 475 214 16 49 chr4 8782735 8782858 -146847262 - PB1D9 SINE Alu 0 120 2 5 652 279 0 0 0 chr4 8783250 8783281 -146846839 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 5 652 467 291 40 54 chr4 8783428 8783577 -146846543 + ID_B1 SINE B4 66 212 -12 5 652 1201 54 0 0 chr4 8784405 8784552 -146845568 - B1_Mus2 SINE Alu 0 147 1 5 652 540 165 36 9 chr4 8787479 8787589 -146842531 - PB1D9 SINE Alu -6 114 2 5 652 390 294 53 101 chr4 8787767 8787787 -146842333 - B4A SINE B4 -46 246 182 5 652 794 168 15 0 chr4 8787787 8787924 -146842196 - B1_Mm SINE Alu 0 147 9 5 652 390 294 53 101 chr4 8787924 8787956 -146842164 - B4A SINE B4 -46 181 67 5 652 416 312 17 111 chr4 8788374 8788554 -146841566 + RSINE1 SINE B4 3 165 0 5 652 270 277 0 0 chr4 8790566 8790631 -146839489 - ID4 SINE ID -16 67 3 5 652 704 198 216 0 chr4 8790682 8790849 -146839271 + B3 SINE B2 14 216 0 5 652 272 315 108 25 chr4 8791984 8792270 -146837850 - L1MD1 LINE L1 -259 5983 5674 5 652 216 0 0 0 chr4 8792281 8792305 -146837815 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 5 652 291 157 0 0 chr4 8793921 8793972 -146836148 + A-rich Low_complexity Low_complexity 1 51 0 5 652 34 0 0 0 chr4 8794204 8794238 -146835882 + AT_rich Low_complexity Low_complexity 1 34 0 5 652 22 0 0 0 chr4 8794564 8794586 -146835534 + AT_rich Low_complexity Low_complexity 1 22 0 5 652 207 0 0 0 chr4 8795327 8795350 -146834770 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 652 184 317 0 48 chr4 8796099 8796162 -146833958 - L4 LINE RTE -1358 671 612 5 652 420 223 52 21 chr4 8796484 8796580 -146833540 - PB1D10 SINE Alu 0 117 19 5 652 538 151 182 0 chr4 8797972 8798098 -146832022 - Lx5 LINE L1 -1 7049 6901 5 652 567 0 0 0 chr4 8799201 8799264 -146830856 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 652 482 315 70 0 chr4 8799945 8800088 -146830032 + RSINE1 SINE B4 4 156 -9 5 652 1324 160 36 166 chr4 8800143 8800614 -146829506 + RMER17C LTR ERVK 1 410 0 5 652 242 319 14 0 chr4 8800711 8800783 -146829337 - B1F1 SINE Alu -76 73 1 5 652 255 231 0 19 chr4 8800733 8800786 -146829334 - ID_B1 SINE B4 -94 130 79 5 652 225 83 0 0 chr4 8801913 8801949 -146828171 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 652 527 224 9 0 chr4 8802973 8803080 -146827040 + PB1D10 SINE Alu 1 108 -9 5 652 29 0 0 0 chr4 8803087 8803116 -146827004 + AT_rich Low_complexity Low_complexity 1 29 0 5 652 31 0 0 0 chr4 8803168 8803199 -146826921 + AT_rich Low_complexity Low_complexity 1 31 0 5 652 317 248 110 37 chr4 8804247 8804356 -146825764 - PB1D10 SINE Alu 0 117 1 5 652 302 308 65 32 chr4 8804377 8804501 -146825619 + RSINE1 SINE B4 19 146 -19 5 652 842 302 48 48 chr4 8804771 8805108 -146825012 + MLT1B LTR MaLR 44 380 -10 5 652 539 120 0 9 chr4 8805656 8805765 -146824355 + (TTCTC)n Simple_repeat Simple_repeat 4 111 0 5 652 749 272 34 43 chr4 8805765 8805999 -146824121 - B4A SINE B4 -59 233 2 5 652 290 319 13 106 chr4 8807539 8807683 -146822437 - ID_B1 SINE B4 -17 207 77 5 652 783 182 27 27 chr4 8807683 8807830 -146822290 - B1_Mur1 SINE Alu -1 148 2 5 652 247 284 14 0 chr4 8807882 8807956 -146822164 - L1M5 LINE L1 -489 5705 5631 5 652 1433 214 33 55 chr4 8808738 8808764 -146821356 - ORR1D1 LTR MaLR -21 353 333 5 652 3419 33 5 0 chr4 8808764 8809158 -146820962 + MTA_Mm LTR MaLR 1 396 0 5 652 1433 214 33 55 chr4 8809158 8809492 -146820628 - ORR1D1 LTR MaLR -42 332 1 5 652 1521 193 124 30 chr4 8809941 8810440 -146819680 - Lx4B LINE L1 -3 7047 6504 5 652 583 216 80 91 chr4 8810621 8810820 -146819300 + B3A SINE B2 2 198 0 5 652 443 304 39 67 chr4 8810947 8811127 -146818993 - B4A SINE B4 -117 175 1 5 652 225 0 0 0 chr4 8811133 8811158 -146818962 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 652 278 376 24 0 chr4 8811444 8811569 -146818551 - MIR SINE MIR -70 192 65 5 652 374 239 42 0 chr4 8811599 8811670 -146818450 + ID4_ SINE ID 3 76 -7 5 652 626 209 196 62 chr4 8811809 8812049 -146818071 - RLTR10A LTR ERVK 0 411 140 5 652 1834 212 16 26 chr4 8812089 8812569 -146817551 - RLTR45-int LTR ERVK -202 7042 6529 5 652 934 280 80 50 chr4 8812703 8813232 -146816888 - IAP-d-int LTR ERVK -2139 5442 4737 5 652 390 259 61 61 chr4 8813240 8813403 -146816717 - IAP-d-int LTR ERVK -2851 3630 3511 5 652 358 283 53 46 chr4 8813406 8813558 -146816562 - IAP-d-int LTR ERVK -4149 2393 2241 5 652 484 174 61 52 chr4 8813780 8813895 -146816225 - RLTR45-int LTR ERVK -1554 433 318 5 652 581 246 183 50 chr4 8813911 8814151 -146815969 - RLTR10A LTR ERVK 0 411 140 5 652 33 0 0 0 chr4 8814381 8814414 -146815706 + AT_rich Low_complexity Low_complexity 1 33 0 5 652 270 21 42 21 chr4 8814755 8814803 -146815317 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 652 859 185 7 0 chr4 8814807 8814953 -146815167 + B1_Mur3 SINE Alu 3 149 0 5 652 1009 252 86 26 chr4 8815065 8815415 -146814705 - MTEa LTR MaLR -4 375 5 5 652 335 280 88 0 chr4 8815757 8815882 -146814238 - ERVL-E-int LTR ERVL -1560 4107 3972 5 652 749 188 224 0 chr4 8816347 8816512 -146813608 - B3 SINE B2 -14 202 1 5 652 241 321 0 12 chr4 8818184 8818266 -146811854 - MLT1A1 LTR MaLR -3 559 479 5 652 792 235 0 26 chr4 8818271 8818424 -146811696 + RSINE1 SINE B4 3 151 -14 5 652 351 0 0 0 chr4 8818427 8818466 -146811654 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 652 348 274 102 137 chr4 8818701 8819044 -146811076 - MLT1A1 LTR MaLR -4 404 74 5 652 227 233 0 0 chr4 8819172 8819203 -146810917 + B3 SINE B2 1 31 -185 5 652 3835 170 83 28 chr4 8819203 8820001 -146810119 + RMER21B LTR ERV1 1 842 0 5 652 689 203 78 44 chr4 8820001 8820181 -146809939 + B3 SINE B2 27 212 -4 5 652 759 75 225 0 chr4 8820303 8820423 -146809697 - B1_Mm SINE Alu 0 147 1 5 652 434 286 49 32 chr4 8820528 8820651 -146809469 - B1_Mm SINE Alu -21 126 2 5 652 1521 222 146 6 chr4 8820972 8821335 -146808785 - MTD LTR MaLR 0 419 6 5 652 727 202 0 24 chr4 8821766 8822019 -146808101 + GA-rich Low_complexity Low_complexity 1 247 0 5 652 665 319 63 48 chr4 8822281 8822348 -146807772 - MER44C DNA MER2_type -49 684 601 5 652 629 284 96 33 chr4 8822348 8822618 -146807502 - B4 SINE B4 -3 289 3 5 652 665 319 63 48 chr4 8822618 8822820 -146807300 - MER44C DNA MER2_type -133 600 411 5 652 198 103 0 0 chr4 8823302 8823331 -146806789 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 5 652 605 234 33 35 chr4 8823346 8823531 -146806589 + B3 SINE B2 4 195 0 5 652 425 178 136 0 chr4 8826034 8826152 -146803968 - Lx7 LINE L1 0 7696 7563 5 652 5356 221 91 15 chr4 8826240 8827338 -146802782 - Lx7 LINE L1 -337 7359 6171 5 652 1440 45 0 0 chr4 8827338 8827585 -146802535 + (TCTA)n Simple_repeat Simple_repeat 1 247 0 5 652 5356 221 91 15 chr4 8827585 8827763 -146802357 - Lx7 LINE L1 -1526 6170 5986 5 652 783 182 23 8 chr4 8827799 8827932 -146802188 - B1_Mus2 SINE Alu -12 135 1 5 652 516 267 55 3 chr4 8827932 8828193 -146801927 + MTD LTR MaLR 108 419 0 5 652 426 20 0 0 chr4 8828759 8828810 -146801310 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 652 405 287 70 47 chr4 8828811 8828983 -146801137 + Tigger7 DNA MER2_type 2313 2488 -3 5 652 218 192 0 19 chr4 8828993 8829046 -146801074 + CT-rich Low_complexity Low_complexity 1 52 0 5 652 1452 246 63 38 chr4 8829252 8829613 -146800507 + MTD LTR MaLR 13 387 -32 5 652 428 310 81 113 chr4 8829613 8829995 -146800125 + ORR1D2 LTR MaLR 1 370 0 5 652 1452 246 63 38 chr4 8829995 8830030 -146800090 + MTD LTR MaLR 388 419 0 5 652 308 304 0 0 chr4 8830538 8830617 -146799503 + ID4_ SINE ID 3 81 -2 5 652 231 36 0 0 chr4 8830618 8830646 -146799474 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 652 233 331 88 66 chr4 8830990 8831126 -146798994 - MER96 DNA hAT -33 142 4 5 652 258 259 125 0 chr4 8831126 8831221 -146798899 - PB1D10 SINE Alu -38 111 3 5 652 186 118 0 0 chr4 8831446 8831480 -146798640 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 652 780 204 7 20 chr4 8832220 8832370 -146797750 + B1_Mur3 SINE Alu 2 149 0 5 652 318 50 0 0 chr4 8832808 8832848 -146797272 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 652 698 235 123 21 chr4 8833356 8833543 -146796577 - B3 SINE B2 -10 206 1 5 652 271 281 0 0 chr4 8834739 8834796 -146795324 - ID2 SINE ID -22 61 5 5 652 378 0 0 0 chr4 8834850 8834892 -146795228 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 652 382 174 29 0 chr4 8835113 8835182 -146794938 - ID2 SINE ID -11 72 2 5 652 209 314 37 51 chr4 8835303 8835430 -146794690 + MIR SINE MIR 114 244 -24 5 652 185 365 39 0 chr4 8835753 8835857 -146794263 - L2 LINE L2 -557 2862 2755 5 652 210 206 0 110 chr4 8836056 8836138 -146793982 + G-rich Low_complexity Low_complexity 1 73 0 5 652 214 204 0 69 chr4 8837587 8837645 -146792475 + CT-rich Low_complexity Low_complexity 3 56 0 5 652 21 0 0 0 chr4 8837887 8837908 -146792212 + AT_rich Low_complexity Low_complexity 1 21 0 5 652 237 65 0 0 chr4 8838041 8838072 -146792048 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 652 23 54 0 0 chr4 8838856 8838893 -146791227 + GC_rich Low_complexity Low_complexity 1 37 0 5 652 522 0 0 0 chr4 8840608 8840666 -146789454 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 652 258 32 0 0 chr4 8841748 8841779 -146788341 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 652 277 328 167 55 chr4 8842798 8843034 -146787086 - L2 LINE L2 -337 3082 2834 6 652 378 0 0 0 chr4 8843034 8843076 -146787044 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 652 277 328 167 55 chr4 8843076 8843445 -146786675 - L2 LINE L2 -586 2833 2409 6 652 252 222 49 0 chr4 8843942 8844023 -146786097 + (TCTCTG)n Simple_repeat Simple_repeat 6 90 0 6 652 279 0 0 0 chr4 8844060 8844091 -146786029 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 652 333 0 0 0 chr4 8844091 8844127 -146785993 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 652 510 174 65 0 chr4 8844637 8844729 -146785391 + PB1D9 SINE Alu 2 99 -21 6 652 926 61 0 267 chr4 8844875 8845077 -146785043 + B1_Mus1 SINE Alu 1 148 0 6 652 1578 10 0 0 chr4 8845077 8845284 -146784836 + (GAA)n Simple_repeat Simple_repeat 1 207 0 6 652 572 306 151 10 chr4 8846031 8846322 -146783798 - MLT1A0 LTR MaLR 0 365 34 6 652 235 246 0 17 chr4 8847409 8847467 -146782653 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 652 198 0 0 0 chr4 8849610 8849632 -146780488 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 652 526 234 51 112 chr4 8849855 8850052 -146780068 - MER5A DNA MER1_type 0 189 5 6 652 302 221 171 23 chr4 8851379 8851467 -146778653 - L2a LINE L2 -1 3425 3325 6 652 535 259 94 45 chr4 8851474 8851674 -146778446 + MER2 DNA MER2_type 5 214 -131 6 652 1540 273 40 25 chr4 8851674 8851827 -146778293 - RCHARR1 DNA MER1_type 0 974 813 6 652 927 135 0 0 chr4 8851827 8851960 -146778160 + B1_Mus1 SINE Alu 5 137 -11 6 652 1540 273 40 25 chr4 8851960 8852287 -146777833 - RCHARR1 DNA MER1_type -162 812 487 6 652 326 23 23 0 chr4 8852288 8852331 -146777789 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 652 689 134 60 35 chr4 8852337 8852453 -146777667 - B1_Mur3 SINE Alu -26 123 5 6 652 1145 300 44 88 chr4 8852479 8852916 -146777204 - RCHARR1 DNA MER1_type -515 459 39 6 652 2907 96 5 22 chr4 8852916 8853330 -146776790 + MTB_Mm LTR MaLR 1 407 0 6 652 1145 300 44 88 chr4 8853330 8853371 -146776749 - RCHARR1 DNA MER1_type -936 38 2 6 652 389 299 0 45 chr4 8853371 8853482 -146776638 + MER2 DNA MER2_type 206 311 -34 6 652 207 0 0 0 chr4 8855034 8855057 -146775063 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 652 635 261 117 24 chr4 8855156 8855474 -146774646 - MLT1B LTR MaLR 0 390 18 6 652 183 80 39 39 chr4 8856892 8856944 -146773176 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 6 652 1215 280 88 20 chr4 8857005 8857562 -146772558 - L1MB3 LINE L1 0 6183 5589 6 652 1930 151 138 11 chr4 8859956 8860305 -146769815 - ORR1B1 LTR MaLR 0 394 2 6 652 476 277 194 72 chr4 8860559 8860931 -146769189 + MLT2B1 LTR ERVL 1 470 -45 6 652 24 0 0 0 chr4 8861360 8861384 -146768736 + AT_rich Low_complexity Low_complexity 1 24 0 6 652 329 322 68 95 chr4 8861395 8861467 -146768653 - ORR1E LTR MaLR -49 321 250 6 652 2641 137 20 26 chr4 8861467 8861923 -146768197 - RLTR11B LTR ERVK 0 453 1 6 652 439 290 53 83 chr4 8861923 8862178 -146767942 - ORR1E LTR MaLR -121 249 3 6 652 438 330 62 13 chr4 8862251 8862478 -146767642 - L1ME1 LINE L1 -10 6169 5932 6 652 1622 181 141 22 chr4 8862573 8862935 -146767185 - MTD LTR MaLR -14 405 1 6 652 404 283 93 59 chr4 8862935 8863260 -146766860 - L1ME1 LINE L1 -552 5792 5450 6 652 3558 33 11 0 chr4 8863457 8863909 -146766211 - L1_Mus1 LINE L1 -558 6009 5553 6 652 246 336 0 41 chr4 8864058 8864179 -146765941 - MLT1F1 LTR MaLR -2 652 537 6 652 240 286 32 0 chr4 8864222 8864285 -146765835 - MLT1F1 LTR MaLR -196 458 394 6 652 259 327 35 70 chr4 8864344 8864443 -146765677 - MLT1F1 LTR MaLR -380 189 91 6 652 4629 103 43 79 chr4 8864443 8865282 -146764838 - RMER17D2 LTR ERVK 0 809 1 6 652 259 327 35 70 chr4 8865282 8865297 -146764823 - MLT1F1 LTR MaLR -479 90 79 6 652 261 0 0 0 chr4 8866689 8866718 -146763402 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 652 513 32 0 0 chr4 8866718 8866781 -146763339 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 652 292 309 39 80 chr4 8867479 8867644 -146762476 - MIR SINE MIR -122 154 1 6 652 606 212 17 0 chr4 8867680 8867798 -146762322 - B1F2 SINE Alu -5 144 25 6 652 443 216 153 89 chr4 8868201 8868404 -146761716 - MER2 DNA MER2_type -22 323 108 6 652 823 189 0 20 chr4 8869700 8869846 -146760274 + B1_Mus1 SINE Alu 5 147 -1 6 652 185 337 71 12 chr4 8872016 8872100 -146758020 - MIR SINE MIR -62 146 58 6 652 231 363 77 0 chr4 8872625 8872716 -146757404 - Cheshire DNA MER1_type -2147 273 176 6 652 327 179 0 0 chr4 8872798 8872865 -146757255 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 652 625 280 6 29 chr4 8872904 8873077 -146757043 - MLT1A0 LTR MaLR -170 195 27 6 652 341 310 85 34 chr4 8873066 8873243 -146756877 - Cheshire DNA MER1_type -2234 186 1 6 652 649 251 152 35 chr4 8873393 8873624 -146756496 - Tigger5 DNA MER2_type -2 2404 2147 6 652 876 108 6 29 chr4 8874215 8874386 -146755734 + (TCCC)n Simple_repeat Simple_repeat 3 169 0 6 652 1575 157 107 17 chr4 8874496 8874794 -146755326 - MTC LTR MaLR 0 421 97 6 652 2036 208 68 58 chr4 8874804 8875255 -146754865 + RMER1B Other Other 481 919 -147 6 652 186 43 0 0 chr4 8875255 8875278 -146754842 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 652 2036 208 68 58 chr4 8875278 8875381 -146754739 + RMER1B Other Other 920 1041 -25 6 652 213 150 25 0 chr4 8875382 8875422 -146754698 + GA-rich Low_complexity Low_complexity 3 43 0 6 652 1188 111 0 0 chr4 8875423 8875603 -146754517 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 652 515 196 0 21 chr4 8875619 8875713 -146754407 - MTC LTR MaLR -329 92 1 6 652 223 265 170 38 chr4 8875721 8875827 -146754293 - B4A SINE B4 -105 187 68 6 652 245 264 0 0 chr4 8875822 8875875 -146754245 - ORR1D1 LTR MaLR -42 332 280 6 652 242 236 89 18 chr4 8875861 8875917 -146754203 - ORR1D1 LTR MaLR -300 74 15 6 652 441 81 0 0 chr4 8876119 8876181 -146753939 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 652 422 381 51 32 chr4 8876181 8876388 -146753732 - B4A SINE B4 -24 268 57 6 652 446 75 15 0 chr4 8876603 8876670 -146753450 + (TTA)n Simple_repeat Simple_repeat 3 70 0 6 652 358 322 164 59 chr4 8876760 8877083 -146753037 - ORR1E LTR MaLR -2 357 1 6 652 791 253 6 0 chr4 8877188 8877350 -146752770 - MER58A DNA MER1_type -25 199 37 6 652 1303 217 11 22 chr4 8877831 8878100 -146752020 + Tigger5 DNA MER2_type 2134 2399 -7 6 652 239 256 60 12 chr4 8878539 8878622 -146751498 + HAL1 LINE L1 1811 1897 -610 6 652 1412 238 60 47 chr4 8878651 8879034 -146751086 + Lx6 LINE L1 7073 7460 0 6 652 1082 259 24 52 chr4 8879097 8879386 -146750734 + B4 SINE B4 12 292 0 6 652 223 276 69 0 chr4 8879667 8879725 -146750395 + PB1D7 SINE Alu 48 109 -11 6 652 279 0 0 0 chr4 8879845 8879876 -146750244 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 652 210 333 91 30 chr4 8879958 8880057 -146750063 - ID_B1 SINE B4 -118 106 2 6 652 334 280 27 0 chr4 8880067 8880142 -146749978 - ID4_ SINE ID -1 82 6 6 652 190 271 110 15 chr4 8880851 8880964 -146749156 + MIRb SINE MIR 55 181 -87 6 652 209 287 65 65 chr4 8881077 8881185 -146748935 - L3 LINE CR1 -57 4432 4325 6 652 221 279 91 23 chr4 8882780 8882868 -146747252 - ID_B1 SINE B4 -128 96 3 6 652 414 39 0 0 chr4 8883171 8883223 -146746897 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 652 420 55 0 0 chr4 8884098 8884153 -146745967 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 652 394 194 0 163 chr4 8884592 8884605 -146745515 - PB1D10 SINE Alu -5 112 101 6 652 189 0 0 0 chr4 8884605 8884626 -146745494 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 652 394 194 0 163 chr4 8884626 8884735 -146745385 - PB1D10 SINE Alu -17 100 10 6 652 329 0 24 0 chr4 8886064 8886105 -146744015 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 652 581 242 33 83 chr4 8886740 8886920 -146743200 - B4A SINE B4 -108 184 14 6 652 296 172 103 0 chr4 8886909 8886967 -146743153 + PB1D10 SINE Alu 43 106 -11 6 652 798 41 0 0 chr4 8887198 8887296 -146742824 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 652 295 315 239 47 chr4 8887311 8887519 -146742601 - B4 SINE B4 -16 276 29 6 652 322 314 48 87 chr4 8887911 8888117 -146742003 - HAL1 LINE L1 -11 2496 2299 6 652 669 298 67 80 chr4 8888138 8888499 -146741621 - ORR1E LTR MaLR -3 356 1 6 652 298 277 22 0 chr4 8888663 8888767 -146741353 + Charlie5 DNA MER1_type 17 121 -2503 6 652 554 279 56 30 chr4 8888777 8889047 -146741073 + Charlie5 DNA MER1_type 2255 2531 -93 6 652 820 286 211 43 chr4 8889224 8890362 -146739758 - HAL1 LINE L1 -619 1888 560 6 652 204 167 0 0 chr4 8890612 8890660 -146739460 + CT-rich Low_complexity Low_complexity 1 48 0 6 652 387 0 0 0 chr4 8891005 8891048 -146739072 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 652 1768 143 71 21 chr4 8891129 8891465 -146738655 - ORR1B2 LTR MaLR -14 353 1 6 652 397 202 25 0 chr4 8891465 8891544 -146738576 - RSINE1 SINE B4 -80 85 5 6 652 244 214 11 0 chr4 8891657 8891714 -146738406 + B1F1 SINE Alu 13 73 -54 6 652 381 324 81 19 chr4 8891767 8891978 -146738142 - B4A SINE B4 -2 290 67 6 652 569 100 54 0 chr4 8892081 8892211 -146737909 + (CA)n Simple_repeat Simple_repeat 1 137 0 6 652 913 274 148 9 chr4 8893302 8893633 -146736487 - MTEa LTR MaLR 0 379 3 6 652 689 163 8 24 chr4 8893701 8893827 -146736293 + B1_Mur1 SINE Alu 26 149 0 6 652 2133 262 76 4 chr4 8893834 8894386 -146735734 - MTEa-int LTR MaLR -45 1535 944 6 652 402 276 109 62 chr4 8895126 8895319 -146734801 - MTEa-int LTR MaLR -666 914 713 6 652 417 81 0 0 chr4 8895472 8895534 -146734586 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 652 1896 238 164 14 chr4 8895613 8896205 -146733915 - MTEa-int LTR MaLR -899 681 1 6 652 808 265 93 111 chr4 8896205 8896583 -146733537 - MTEa LTR MaLR -8 371 1 6 652 274 170 0 0 chr4 8896871 8896918 -146733202 + RMER1A Other Other 969 1015 -15 6 652 4515 161 127 24 chr4 8896926 8897544 -146732576 - ORR1C2-int LTR MaLR -156 1102 392 6 652 1861 205 179 17 chr4 8897544 8898070 -146732050 - RMER19C LTR ERVK 0 611 1 6 652 4515 161 127 24 chr4 8898070 8898450 -146731670 - ORR1C2-int LTR MaLR -867 391 1 6 652 1704 192 15 53 chr4 8898456 8898851 -146731269 - ORR1C2 LTR MaLR -2 382 3 6 652 559 320 35 31 chr4 8899162 8899388 -146730732 - MER21B LTR ERV1 -169 694 468 6 652 1507 54 43 0 chr4 8899743 8899929 -146730191 + B2_Mm2 SINE B2 1 194 -1 6 652 197 213 0 32 chr4 8899965 8900028 -146730092 + CT-rich Low_complexity Low_complexity 4 64 0 6 652 328 255 29 0 chr4 8900037 8900139 -146729981 + Tigger7 DNA MER2_type 2337 2441 -50 6 652 408 314 0 8 chr4 8900151 8900273 -146729847 + MTEa LTR MaLR 1 121 -258 7 652 345 310 146 22 chr4 8900273 8900418 -146729702 + MT2A LTR ERVL 1 300 -233 7 652 3193 160 55 5 chr4 8900421 8901090 -146729030 - RMER6A LTR ERVK 0 756 1 7 652 562 310 68 14 chr4 8901090 8901305 -146728815 + MT2A LTR ERVL 298 524 -9 7 652 1367 283 55 32 chr4 8901323 8901816 -146728304 - Lx8 LINE L1 -2 7471 6968 7 652 314 277 72 0 chr4 8901827 8901910 -146728210 - Lx8 LINE L1 -574 6899 6811 7 652 505 288 131 35 chr4 8901936 8902249 -146727871 + MLT1C LTR MaLR 110 452 -15 7 652 1469 239 38 6 chr4 8902248 8902589 -146727531 - ORR1D1 LTR MaLR -22 352 1 7 652 3145 244 70 119 chr4 8902589 8903698 -146726422 - ORR1D1-int LTR MaLR 0 1370 322 7 652 614 186 132 0 chr4 8903698 8903827 -146726293 - B1_Mur2 SINE Alu 0 149 4 7 652 3145 244 70 119 chr4 8903827 8904158 -146725962 - ORR1D1-int LTR MaLR -1049 321 1 7 652 1271 173 217 22 chr4 8904158 8904471 -146725649 - ORR1D1 LTR MaLR 0 374 1 7 652 219 72 33 67 chr4 8904964 8905024 -146725096 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 7 652 559 292 14 7 chr4 8905050 8905198 -146724922 + B3A SINE B2 9 157 -41 7 652 1284 67 0 0 chr4 8905202 8905382 -146724738 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 652 546 57 0 0 chr4 8905554 8905624 -146724496 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 7 652 1113 58 14 0 chr4 8905627 8905766 -146724354 - B1_Mus2 SINE Alu -6 141 1 7 652 577 329 129 42 chr4 8905846 8906804 -146723316 + L1M4c LINE L1 754 1795 -4589 7 652 360 291 63 11 chr4 8906947 8907121 -146722999 + L1M4c LINE L1 2025 2207 -4177 7 652 216 175 0 24 chr4 8907192 8907233 -146722887 + CT-rich Low_complexity Low_complexity 3 42 0 7 652 803 223 110 16 chr4 8907522 8907713 -146722407 - B3 SINE B2 -5 211 3 7 652 3490 50 28 2 chr4 8908102 8908524 -146721596 + RLTR10C LTR ERVK 1 433 -3 7 652 418 57 0 28 chr4 8908662 8908734 -146721386 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 7 652 1219 44 0 6 chr4 8908734 8908895 -146721225 - B2_Mm1a SINE B2 -33 160 1 7 652 414 269 92 134 chr4 8909129 8909554 -146720566 - RMER10A LTR ERVL -24 418 12 7 652 526 279 27 103 chr4 8909714 8909826 -146720294 + B4 SINE B4 4 99 -193 7 652 678 185 80 15 chr4 8909826 8909963 -146720157 - B1F2 SINE Alu -2 147 2 7 652 526 279 27 103 chr4 8909963 8910074 -146720046 + B4 SINE B4 100 210 -82 7 652 231 36 0 0 chr4 8910129 8910157 -146719963 + (CG)n Simple_repeat Simple_repeat 2 29 0 7 652 477 0 0 0 chr4 8910157 8910209 -146719911 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 652 460 264 76 23 chr4 8910453 8910585 -146719535 - ID_B1 SINE B4 0 224 86 7 652 231 109 0 72 chr4 8910744 8910813 -146719307 + A-rich Low_complexity Low_complexity 3 66 0 7 652 223 224 0 20 chr4 8910920 8910970 -146719150 + GA-rich Low_complexity Low_complexity 4 52 0 7 652 254 296 137 57 chr4 8911165 8911376 -146718744 + Tigger5 DNA MER2_type 16 243 -2163 7 652 1088 306 50 56 chr4 8911548 8912029 -146718091 + Lx8 LINE L1 6689 7166 -307 7 652 285 29 0 0 chr4 8912131 8912165 -146717955 + (CAAAG)n Simple_repeat Simple_repeat 1 34 0 7 652 375 73 0 0 chr4 8912611 8912666 -146717454 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 652 717 171 0 0 chr4 8912683 8912858 -146717262 + (CA)n Simple_repeat Simple_repeat 2 176 0 7 81 249 192 0 0 chr4 8912859 8912911 -146717209 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 7 653 432 279 129 5 chr4 8913200 8913409 -146716711 - Charlie4 DNA MER1_type -20 1941 1707 7 653 29 0 0 0 chr4 8914164 8914193 -146715927 + AT_rich Low_complexity Low_complexity 1 29 0 7 653 199 351 80 0 chr4 8915955 8916106 -146714014 - MIR SINE MIR -79 183 21 7 653 516 132 0 0 chr4 8918700 8918783 -146711337 + (GA)n Simple_repeat Simple_repeat 2 84 0 7 653 777 208 0 7 chr4 8918961 8919106 -146711014 + B1_Mur2 SINE Alu 1 144 -5 7 653 201 121 0 0 chr4 8919106 8919139 -146710981 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 7 653 402 305 103 21 chr4 8920027 8920221 -146709899 + RMER15 LTR ERVL 348 557 -18 7 653 219 36 0 0 chr4 8920794 8920822 -146709298 + (T)n Simple_repeat Simple_repeat 1 28 0 7 653 2470 139 45 45 chr4 8920949 8921370 -146708750 - MTC LTR MaLR 0 421 1 7 653 196 169 25 49 chr4 8921536 8921617 -146708503 + (CAGAGA)n Simple_repeat Simple_repeat 2 80 0 7 653 651 179 0 0 chr4 8921626 8921805 -146708315 + GA-rich Low_complexity Low_complexity 2 180 0 7 653 210 71 0 0 chr4 8922484 8922512 -146707608 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 653 1187 288 16 14 chr4 8922750 8923113 -146707007 - MTD LTR MaLR -14 405 42 7 653 700 164 35 7 chr4 8923239 8923380 -146706740 - Lx LINE L1 -60 6594 6450 7 653 432 250 18 44 chr4 8923456 8923569 -146706551 - ID_B1 SINE B4 -10 214 105 7 653 180 238 0 0 chr4 8923662 8923725 -146706395 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 653 2280 84 51 10 chr4 8923768 8924082 -146706038 + ORR1A2 LTR MaLR 1 327 0 7 653 905 79 79 0 chr4 8924854 8924981 -146705139 + B1_Mus1 SINE Alu 1 137 -11 7 653 1439 193 159 3 chr4 8925008 8925335 -146704785 - MTD LTR MaLR -30 389 12 7 653 342 0 0 0 chr4 8925698 8925736 -146704384 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 7 653 435 95 81 0 chr4 8925736 8925810 -146704310 - B1_Mur4 SINE Alu -2 148 69 7 653 266 81 0 0 chr4 8925805 8925842 -146704278 + B1_Mus1 SINE Alu 35 71 -77 7 653 309 297 70 0 chr4 8925827 8925955 -146704165 + RMER15 LTR ERVL 427 563 -12 7 653 814 319 97 53 chr4 8925962 8926418 -146703702 + MER44C DNA MER2_type 247 722 -11 7 653 242 261 67 75 chr4 8926590 8926710 -146703410 + MIR SINE MIR 114 232 -30 7 653 262 270 22 0 chr4 8926990 8927079 -146703041 + Tigger5 DNA MER2_type 30 120 -2286 7 653 225 300 25 0 chr4 8927320 8927400 -146702720 - MLT1B LTR MaLR -46 344 263 7 653 1828 147 28 122 chr4 8927421 8927847 -146702273 - ORR1B1 LTR MaLR -8 386 1 7 653 545 273 70 0 chr4 8927848 8928020 -146702100 - MLT1B LTR MaLR -159 231 48 7 653 864 211 113 5 chr4 8928336 8928522 -146701598 - B3 SINE B2 -10 206 1 7 653 204 158 0 0 chr4 8929372 8929410 -146700710 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 653 340 158 26 0 chr4 8929480 8929556 -146700564 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 653 456 323 37 6 chr4 8930808 8930970 -146699150 + MTEa LTR MaLR 212 378 -1 7 653 1843 158 3 23 chr4 8931142 8931485 -146698635 + ORR1A1 LTR MaLR 1 336 -10 7 653 258 32 0 0 chr4 8931967 8931998 -146698122 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 7 653 326 290 87 0 chr4 8934097 8934235 -146695885 - Charlie5 DNA MER1_type -241 2383 2234 7 653 26 0 0 0 chr4 8934261 8934287 -146695833 + AT_rich Low_complexity Low_complexity 1 26 0 7 653 252 227 0 33 chr4 8934401 8934492 -146695628 + CT-rich Low_complexity Low_complexity 2 89 0 7 653 253 233 173 87 chr4 8934492 8934619 -146695501 - ID_B1 SINE B4 -1 223 86 7 653 540 111 0 0 chr4 8935472 8935553 -146694567 + (TCCA)n Simple_repeat Simple_repeat 3 83 0 7 653 854 274 89 3 chr4 8935663 8935978 -146694142 + MER2 DNA MER2_type 1 342 -3 7 653 306 0 0 0 chr4 8935983 8936017 -146694103 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 653 351 0 0 0 chr4 8936017 8936055 -146694065 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 653 552 221 0 0 chr4 8936549 8936703 -146693417 + (CCA)n Simple_repeat Simple_repeat 1 154 0 7 653 360 0 0 0 chr4 8938683 8938723 -146691397 + (GGA)n Simple_repeat Simple_repeat 2 41 0 7 653 206 77 51 0 chr4 8939040 8939079 -146691041 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 7 653 236 30 0 29 chr4 8940832 8940866 -146689254 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 7 653 250 274 57 49 chr4 8940944 8941067 -146689053 - MLT1A1 LTR MaLR -12 396 273 7 653 1368 146 21 180 chr4 8941121 8941554 -146688566 - ORR1C2 LTR MaLR -7 377 16 7 653 198 0 0 0 chr4 8942112 8942134 -146687986 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 7 653 225 310 59 17 chr4 8942566 8942684 -146687436 - MIR SINE MIR -117 145 23 7 653 538 244 38 8 chr4 8944605 8944737 -146685383 + B1F SINE Alu 9 144 -5 7 653 921 202 149 0 chr4 8944864 8945052 -146685068 - B3 SINE B2 0 216 1 7 653 565 281 58 13 chr4 8945490 8945645 -146684475 + B3 SINE B2 1 162 -54 7 653 349 334 83 96 chr4 8945736 8946133 -146683987 - MLT1A1 LTR MaLR -1 407 16 7 653 243 0 0 0 chr4 8946375 8946402 -146683718 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 653 755 297 0 14 chr4 8946865 8947077 -146683043 + MER121 Unknown Unknown 13 221 -191 7 653 519 217 0 62 chr4 8947495 8947514 -146682606 - B1_Mur3 SINE Alu -43 106 93 7 653 968 111 7 0 chr4 8947514 8947667 -146682453 + (TC)n Simple_repeat Simple_repeat 2 155 0 7 653 519 217 0 62 chr4 8947667 8947760 -146682360 - B1_Mur3 SINE Alu -57 92 1 7 653 709 253 101 0 chr4 8947844 8948002 -146682118 - B3A SINE B2 -24 174 1 7 653 237 65 0 0 chr4 8948029 8948060 -146682060 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 7 653 458 304 15 64 chr4 8948115 8948318 -146681802 + Tigger5 DNA MER2_type 62 242 -2164 7 653 270 0 0 0 chr4 8948475 8948505 -146681615 + (T)n Simple_repeat Simple_repeat 1 30 0 7 653 339 247 0 124 chr4 8948570 8948667 -146681453 + ID_B1 SINE B4 121 205 -19 7 653 1013 111 0 8 chr4 8948672 8949259 -146680861 + (CA)n Simple_repeat Simple_repeat 1 582 0 7 653 223 353 62 16 chr4 8949259 8949452 -146680668 - MIRb SINE MIR -43 225 24 7 653 274 269 0 25 chr4 8950384 8950464 -146679656 + ID4_ SINE ID 3 80 -3 7 653 309 109 0 0 chr4 8950703 8950749 -146679371 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 7 653 249 282 28 0 chr4 8950756 8950827 -146679293 + MIR3 SINE MIR 127 199 -9 7 653 420 20 0 0 chr4 8951651 8951700 -146678420 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 8 653 438 203 0 0 chr4 8952072 8952225 -146677895 + (CA)n Simple_repeat Simple_repeat 2 154 0 8 653 863 159 7 0 chr4 8952237 8952546 -146677574 + (CA)n Simple_repeat Simple_repeat 1 311 0 8 653 270 0 0 0 chr4 8952722 8952752 -146677368 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 8 653 29 60 0 0 chr4 8953898 8953948 -146676172 + AT_rich Low_complexity Low_complexity 1 50 0 8 653 25 0 0 0 chr4 8954886 8954911 -146675209 + AT_rich Low_complexity Low_complexity 1 25 0 8 653 471 299 0 35 chr4 8956380 8956550 -146673570 + RSINE1 SINE B4 1 164 -1 8 653 321 110 41 33 chr4 8956552 8956674 -146673446 + C-rich Low_complexity Low_complexity 6 128 0 8 653 446 271 0 63 chr4 8956773 8956899 -146673221 + PB1D7 SINE Alu 2 119 -1 8 653 374 260 41 10 chr4 8957147 8957244 -146672876 - PB1D10 SINE Alu -7 110 11 8 653 183 237 131 93 chr4 8957626 8957733 -146672387 + L4 LINE RTE 250 360 -1669 8 653 1084 306 31 67 chr4 8957762 8958119 -146672001 + MLT1B LTR MaLR 1 344 -46 8 653 294 315 104 65 chr4 8958136 8958367 -146671753 - ORR1D2 LTR MaLR -39 331 92 8 653 315 49 0 0 chr4 8959251 8959292 -146670828 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 653 282 256 99 37 chr4 8959318 8959399 -146670721 - B4 SINE B4 -11 281 196 8 653 273 311 0 27 chr4 8959411 8959513 -146670607 - B4A SINE B4 -199 93 1 8 653 261 0 0 0 chr4 8960145 8960174 -146669946 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 653 24 0 0 0 chr4 8960993 8961017 -146669103 + AT_rich Low_complexity Low_complexity 1 24 0 8 653 338 281 86 19 chr4 8961728 8961833 -146668287 + B1F SINE Alu 2 113 -36 8 653 331 325 50 17 chr4 8961730 8961849 -146668271 + ID_B1 SINE B4 85 207 -17 8 653 244 196 232 0 chr4 8961892 8961948 -146668172 + ID4_ SINE ID 2 70 -13 8 653 630 0 0 0 chr4 8961952 8962022 -146668098 + (CAAAG)n Simple_repeat Simple_repeat 5 74 0 8 653 447 52 0 0 chr4 8962024 8962082 -146668038 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 8 653 261 0 0 0 chr4 8962084 8962113 -146668007 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 8 653 378 61 0 0 chr4 8962367 8962416 -146667704 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 653 257 309 191 20 chr4 8963058 8963210 -146666910 + MamGypLTR2c LTR Gypsy 809 986 -82 8 653 21 0 0 0 chr4 8963885 8963906 -146666214 + AT_rich Low_complexity Low_complexity 1 21 0 8 653 270 250 191 9 chr4 8963930 8964035 -146666085 + B1F SINE Alu 26 149 0 8 653 201 250 0 0 chr4 8964042 8964102 -146666018 + A-rich Low_complexity Low_complexity 1 60 0 8 653 521 282 0 0 chr4 8965527 8965644 -146664476 + PB1D10 SINE Alu 1 117 0 8 653 264 275 59 60 chr4 8967210 8967401 -146662719 - L1MA7 LINE L1 -1 6311 6114 8 653 341 266 175 23 chr4 8967508 8967685 -146662435 - Lx8 LINE L1 -215 7258 7055 8 653 266 320 88 10 chr4 8967752 8967957 -146662163 - L1MA7 LINE L1 -169 6122 5902 8 653 942 250 148 3 chr4 8969186 8969483 -146660637 + ORR1D2 LTR MaLR 1 340 -30 8 653 1438 226 139 23 chr4 8969478 8969831 -146660289 - MTD LTR MaLR -5 414 21 8 653 1276 232 25 51 chr4 8969829 8970195 -146659925 - MTC-int LTR MaLR -685 573 144 8 653 225 154 0 0 chr4 8970196 8970235 -146659885 + CT-rich Low_complexity Low_complexity 1 39 0 8 653 632 239 27 54 chr4 8970235 8970421 -146659699 - Lx6 LINE L1 -2 7458 7278 8 653 672 219 89 9 chr4 8970434 8970601 -146659519 + B3 SINE B2 1 183 -10 8 653 1689 249 161 32 chr4 8970604 8971206 -146658914 - Lx6 LINE L1 -186 7274 6595 8 653 22 0 0 0 chr4 8972378 8972400 -146657720 + AT_rich Low_complexity Low_complexity 1 22 0 8 653 459 35 0 0 chr4 8972426 8972483 -146657637 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 653 339 195 182 26 chr4 8972491 8972606 -146657514 - B3A SINE B2 -64 134 4 8 653 359 250 153 127 chr4 8972694 8973033 -146657087 - L1MB4 LINE L1 -144 6036 5689 8 653 229 267 0 0 chr4 8974233 8974308 -146655812 + CT-rich Low_complexity Low_complexity 1 75 0 8 653 326 23 0 23 chr4 8974863 8974907 -146655213 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 8 653 853 29 0 0 chr4 8974907 8975010 -146655110 - B1_Mus1 SINE Alu -12 136 34 8 653 541 253 93 7 chr4 8975627 8975778 -146654342 - MLT1A LTR MaLR -4 370 207 8 653 793 182 21 0 chr4 8976324 8976467 -146653653 + B1_Mus1 SINE Alu 2 147 -1 8 653 274 361 49 22 chr4 8977585 8977769 -146652351 + ERVL-E-int LTR ERVL 3336 3524 -2143 8 653 357 269 162 120 chr4 8979099 8979433 -146650687 + MLT1A0 LTR MaLR 1 348 -17 8 653 2141 147 16 16 chr4 8980092 8980472 -146649648 - RLTR14 LTR ERV1 0 382 3 8 653 507 298 73 18 chr4 8980834 8981053 -146649067 + Helitron2Na_Mam RC Helitron? 66 296 -28 8 653 1394 156 0 22 chr4 8981642 8981872 -146648248 - URR1B DNA MER1_type 0 225 1 8 653 834 268 132 4 chr4 8983555 8983813 -146646307 + B4A SINE B4 1 291 -1 8 653 182 91 0 29 chr4 8983848 8983882 -146646238 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 653 228 260 13 40 chr4 8983963 8984039 -146646081 - Charlie21a DNA MER1_type -381 832 759 8 653 859 158 79 0 chr4 8984080 8984219 -146645901 + B1_Mur4 SINE Alu 1 150 0 8 653 503 256 199 32 chr4 8984365 8984611 -146645509 - B4 SINE B4 0 292 6 8 653 274 361 33 0 chr4 8984617 8984800 -146645320 - L1M4 LINE L1 -3519 2627 2439 8 653 665 137 0 8 chr4 8985342 8985460 -146644660 + (TTCC)n Simple_repeat Simple_repeat 2 118 0 8 653 264 373 85 37 chr4 8986121 8986416 -146643704 - MLT1J2 LTR MaLR -24 424 116 8 653 806 289 10 21 chr4 8986682 8986876 -146643244 - ID_B1 SINE B4 -25 199 8 8 653 196 224 30 0 chr4 8987020 8987087 -146643033 + CT-rich Low_complexity Low_complexity 4 72 0 8 653 473 80 13 0 chr4 8987961 8988036 -146642084 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 653 217 160 39 20 chr4 8988037 8988088 -146642032 + (CATAT)n Simple_repeat Simple_repeat 4 55 0 8 653 214 185 22 37 chr4 8988108 8988243 -146641877 + (CA)n Simple_repeat Simple_repeat 2 134 0 8 653 337 221 27 35 chr4 8988391 8988648 -146641472 + (CA)n Simple_repeat Simple_repeat 1 254 0 8 653 240 266 45 30 chr4 8989891 8989957 -146640163 - MLT1A1 LTR MaLR -312 96 30 8 653 235 322 30 113 chr4 8990140 8990308 -146639812 + MT2B LTR ERVL 107 260 -341 8 653 729 243 0 27 chr4 8990196 8990344 -146639776 + ID_B1 SINE B4 78 221 -3 8 653 230 178 0 22 chr4 8990353 8990399 -146639721 + A-rich Low_complexity Low_complexity 3 47 0 8 653 353 348 87 87 chr4 8990578 8990711 -146639409 - L1ME2 LINE L1 -244 5920 5782 8 653 378 0 0 0 chr4 8990711 8990753 -146639367 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 653 353 348 87 87 chr4 8990753 8990846 -146639274 - L1ME2 LINE L1 -383 5781 5680 8 653 549 0 0 0 chr4 8990846 8990907 -146639213 + (TTTC)n Simple_repeat Simple_repeat 1 61 0 8 653 1286 64 0 6 chr4 8990907 8991081 -146639039 + (TTC)n Simple_repeat Simple_repeat 3 175 0 8 653 353 348 87 87 chr4 8991081 8991104 -146639016 - L1ME2 LINE L1 -485 5679 5662 8 653 1066 15 0 15 chr4 8991104 8991238 -146638882 + (TTC)n Simple_repeat Simple_repeat 2 133 0 8 653 353 348 87 87 chr4 8991238 8991432 -146638688 - L1ME2 LINE L1 -503 5661 5476 8 653 870 237 0 23 chr4 8991435 8991608 -146638512 - B3 SINE B2 0 216 48 8 653 507 361 30 17 chr4 8992297 8992528 -146637592 + Tigger7 DNA MER2_type 4 237 -2254 8 653 914 351 50 37 chr4 8992695 8993156 -146636964 - MER44B DNA MER2_type -80 470 4 8 653 222 277 47 35 chr4 8993236 8993322 -146636798 - MIRb SINE MIR -124 144 58 8 653 359 230 78 110 chr4 8994101 8994301 -146635819 - MLT1K LTR MaLR -2 608 405 8 653 278 327 19 28 chr4 8994554 8994661 -146635459 + B4A SINE B4 103 208 -84 8 653 351 0 0 0 chr4 8994689 8994728 -146635392 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 653 1105 68 6 18 chr4 8994728 8994893 -146635227 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 8 653 284 349 65 13 chr4 8995124 8995278 -146634842 - MIR SINE MIR -24 238 77 8 653 941 122 0 37 chr4 8995626 8995813 -146634307 + GA-rich Low_complexity Low_complexity 1 180 0 8 653 314 123 18 0 chr4 8995821 8995878 -146634242 + (GGA)n Simple_repeat Simple_repeat 3 60 0 8 653 257 27 54 0 chr4 8995878 8995915 -146634205 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 8 653 308 159 108 31 chr4 8996170 8996235 -146633885 + B3A SINE B2 8 77 -121 8 653 4353 225 58 102 chr4 8996235 8996588 -146633532 + MTD-int LTR MaLR 15 391 -867 8 653 571 182 175 0 chr4 8996588 8996714 -146633406 + B1_Mur3 SINE Alu 1 148 -1 8 653 4353 225 58 102 chr4 8996714 8997473 -146632647 + MTD-int LTR MaLR 392 1074 -184 8 653 1228 48 0 7 chr4 8997473 8997621 -146632499 - B1_Mus2 SINE Alu 0 147 1 8 653 4353 225 58 102 chr4 8997621 8997808 -146632312 + MTD-int LTR MaLR 1075 1258 0 8 653 469 192 47 19 chr4 8997810 8997916 -146632204 + MTD LTR MaLR 3 111 -310 8 653 932 151 7 0 chr4 8998304 8998443 -146631677 + B1_Mur3 SINE Alu 4 143 -6 8 653 246 160 0 0 chr4 8998453 8998503 -146631617 + (CATA)n Simple_repeat Simple_repeat 4 53 0 8 653 246 128 0 0 chr4 8998530 8998569 -146631551 + (TTG)n Simple_repeat Simple_repeat 1 39 0 8 653 1205 205 67 15 chr4 8998570 8998837 -146631283 + MTD LTR MaLR 125 405 -14 8 653 1424 191 47 123 chr4 8998839 8999269 -146630851 - RMER10B LTR ERVL -1 397 1 8 653 474 273 25 60 chr4 8999524 8999721 -146630399 - MLT1A0 LTR MaLR -218 190 1 8 653 306 296 45 32 chr4 9000550 9000707 -146629413 + L2b LINE L2 3249 3418 -8 1 653 233 367 135 51 chr4 9002922 9003100 -146627020 + Tigger5 DNA MER2_type 1 193 -2213 2 653 3301 34 0 8 chr4 9003914 9004305 -146625815 - L1Md_F2 LINE L1 -1 6581 6194 3 653 1664 201 159 33 chr4 9004316 9004795 -146625325 - Lx7 LINE L1 -179 7517 6979 4 653 218 291 35 88 chr4 9004795 9004908 -146625212 + L4 LINE RTE 568 674 -1355 5 653 3418 35 2 2 chr4 9006274 9006670 -146623450 + MTA_Mm LTR MaLR 1 396 0 6 653 407 265 142 42 chr4 9009938 9010296 -146619824 - RMER10A LTR ERVL -19 423 30 7 653 468 77 0 0 chr4 9011526 9011591 -146618529 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 8 653 1386 19 0 0 chr4 9011620 9011781 -146618339 + (TTCCC)n Simple_repeat Simple_repeat 2 162 0 9 653 824 148 0 13 chr4 9011781 9011923 -146618197 + CT-rich Low_complexity Low_complexity 2 143 0 1 653 824 167 0 0 chr4 9011923 9012049 -146618071 - B1_Mur4 SINE Alu -20 130 5 1 653 662 271 119 78 chr4 9012120 9012464 -146617656 + ORR1E LTR MaLR 1 358 -1 1 653 1167 112 0 0 chr4 9013718 9013897 -146616223 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 653 2735 148 4 1 chr4 9014041 9014459 -146615661 - MTC LTR MaLR -11 410 1 1 653 319 352 0 44 chr4 9014968 9015081 -146615039 + MER20 DNA MER1_type 112 219 0 1 653 1102 260 37 27 chr4 9015667 9015963 -146614157 + MTE2b LTR MaLR 81 379 0 1 653 576 296 22 0 chr4 9016418 9016597 -146613523 + MER53 DNA hAT 3 185 -8 1 653 269 335 151 24 chr4 9016602 9016807 -146613313 + Tigger11a DNA MER2_type 438 668 -67 1 653 2511 279 81 16 chr4 9017410 9018197 -146611923 + RCHARR1 DNA MER1_type 24 861 -113 1 653 402 244 82 82 chr4 9018203 9018386 -146611734 + RCHARR1 DNA MER1_type 784 966 -8 1 653 410 396 118 3 chr4 9018739 9019071 -146611049 - L1ME3B LINE L1 -309 5931 5562 2 653 553 321 6 6 chr4 9019717 9019880 -146610240 + MLT1B-int LTR MaLR 840 1002 -487 2 653 311 347 109 25 chr4 9020667 9020942 -146609178 - MLT1D LTR MaLR -130 375 78 2 653 206 309 21 11 chr4 9022452 9022547 -146607573 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 2 653 414 0 0 0 chr4 9022576 9022622 -146607498 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 653 845 264 105 78 chr4 9022653 9023023 -146607097 + MLT1B LTR MaLR 9 388 -2 2 653 387 0 0 0 chr4 9023304 9023347 -146606773 + (CAA)n Simple_repeat Simple_repeat 2 44 0 2 653 258 57 37 19 chr4 9025348 9025402 -146604718 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2 653 431 227 41 89 chr4 9026024 9026193 -146603927 - MIRb SINE MIR -61 207 47 2 653 262 371 8 17 chr4 9026397 9026515 -146603605 + MER121 Unknown Unknown 234 350 -62 2 653 415 292 95 80 chr4 9027395 9027659 -146602461 - MLT1A0 LTR MaLR 0 365 98 2 653 1184 249 90 52 chr4 9027671 9028226 -146601894 - L1M4 LINE L1 -1197 4949 4374 3 653 189 0 0 0 chr4 9028229 9028250 -146601870 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 653 447 274 51 60 chr4 9028354 9028571 -146601549 - L1M4 LINE L1 -1763 4377 4163 3 653 4911 132 20 10 chr4 9028847 9029633 -146600487 - Lx LINE L1 0 6654 5861 3 653 1206 54 0 0 chr4 9029660 9029807 -146600313 - B1_Mus2 SINE Alu 0 147 1 3 653 207 69 0 0 chr4 9029889 9029918 -146600202 + (GGA)n Simple_repeat Simple_repeat 3 31 0 3 653 1969 152 71 3 chr4 9030027 9030377 -146599743 - ORR1C2 LTR MaLR 0 384 11 3 653 1176 279 77 17 chr4 9030444 9030770 -146599350 + ORR1E LTR MaLR 6 355 -4 3 653 474 200 13 58 chr4 9033170 9033324 -146596796 - Lx9 LINE L1 -8 7636 7490 3 653 691 229 0 15 chr4 9033328 9033461 -146596659 + B1_Mur1 SINE Alu 19 149 0 3 653 201 133 0 0 chr4 9033535 9033565 -146596555 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 653 561 236 106 32 chr4 9033568 9033756 -146596364 - B3 SINE B2 -14 202 1 4 653 191 146 0 24 chr4 9033826 9033868 -146596252 + GA-rich Low_complexity Low_complexity 2 42 0 4 653 771 288 96 10 chr4 9035199 9035511 -146594609 - MLT1A0 LTR MaLR -12 353 15 4 653 207 0 0 0 chr4 9036181 9036204 -146593916 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 653 261 191 15 31 chr4 9037068 9037133 -146592987 + MER53 DNA hAT 96 159 -34 4 653 851 259 18 37 chr4 9037552 9037825 -146592295 - L1MB2 LINE L1 -1 6170 5903 4 653 424 295 41 41 chr4 9038061 9038206 -146591914 - ID_B1 SINE B4 0 224 80 4 653 465 279 71 58 chr4 9039100 9039340 -146590780 - Lx8 LINE L1 0 7473 7231 4 653 640 285 88 31 chr4 9039766 9039958 -146590162 + B3 SINE B2 12 214 -2 4 653 516 16 0 0 chr4 9040034 9040095 -146590025 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 653 402 21 0 0 chr4 9040151 9040198 -146589922 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 653 530 286 131 0 chr4 9040206 9040405 -146589715 - MER58B DNA MER1_type 0 341 117 5 653 233 293 40 13 chr4 9041518 9041594 -146588526 + MIRb SINE MIR 190 267 -1 5 653 312 333 0 0 chr4 9042981 9043071 -146587049 + PB1D7 SINE Alu 14 103 -17 5 653 27 29 0 0 chr4 9043661 9043695 -146586425 + AT_rich Low_complexity Low_complexity 1 34 0 5 653 369 0 0 0 chr4 9043696 9043737 -146586383 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 653 1125 98 46 0 chr4 9043737 9043890 -146586230 - B2_Mm2 SINE B2 -34 161 2 5 654 23 0 0 0 chr4 9044055 9044078 -146586042 + AT_rich Low_complexity Low_complexity 1 23 0 5 654 936 223 91 22 chr4 9044079 9044504 -146585616 - Lx9 LINE L1 -20 7624 7138 5 654 242 148 32 32 chr4 9044674 9044737 -146585383 + G-rich Low_complexity Low_complexity 4 66 0 5 654 1087 206 108 12 chr4 9046834 9047075 -146583045 - MTC LTR MaLR -52 369 106 6 654 865 85 17 0 chr4 9047075 9047193 -146582927 + PB1D9 SINE Alu 1 120 0 6 654 315 0 0 0 chr4 9047193 9047228 -146582892 + (A)n Simple_repeat Simple_repeat 1 35 0 6 654 7864 74 24 5 chr4 9047263 9048440 -146581680 - L1_Mus4 LINE L1 -6 6630 5430 6 654 778 294 55 22 chr4 9049746 9050027 -146580093 - Tigger5 DNA MER2_type -1 2405 2162 6 654 473 163 11 0 chr4 9051036 9051128 -146578992 + CT-rich Low_complexity Low_complexity 1 93 0 6 654 674 298 58 93 chr4 9051231 9051618 -146578502 - MLT1A0 LTR MaLR 0 408 2 6 654 314 340 9 44 chr4 9052066 9052180 -146577940 - MLT1G LTR MaLR -299 292 183 6 654 2142 154 18 23 chr4 9052357 9052742 -146577378 - MTB_Mm LTR MaLR 0 407 25 6 654 288 0 0 0 chr4 9052770 9052802 -146577318 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 654 442 287 45 108 chr4 9052818 9052994 -146577126 - RSINE1 SINE B4 0 165 1 7 654 676 231 7 7 chr4 9054433 9054568 -146575552 - B1_Mur1 SINE Alu -13 136 2 7 654 5686 197 49 42 chr4 9054591 9054710 -146575410 - Lx9 LINE L1 -1 7643 7535 7 654 1442 57 17 0 chr4 9054710 9054887 -146575233 - B2_Mm2 SINE B2 -14 181 2 7 654 5686 197 49 42 chr4 9054887 9056002 -146574118 - Lx9 LINE L1 -110 7534 6400 7 654 204 158 0 0 chr4 9057173 9057211 -146572909 + T-rich Low_complexity Low_complexity 1 38 0 7 654 267 103 0 0 chr4 9057902 9057941 -146572179 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 654 369 262 0 0 chr4 9058018 9058098 -146572022 - ID4 SINE ID -2 81 2 7 654 591 329 110 10 chr4 9058252 9058544 -146571576 + MER2 DNA MER2_type 23 343 -2 7 654 202 295 245 13 chr4 9058892 9059043 -146571077 + MER5A DNA MER1_type 2 187 -2 7 654 363 254 94 0 chr4 9060010 9060148 -146569972 + MLT1A1 LTR MaLR 248 398 -10 7 654 224 305 42 0 chr4 9060634 9060729 -146569391 - L2c LINE L2 -39 3348 3250 8 654 1314 247 82 6 chr4 9060956 9061286 -146568834 + ORR1D2 LTR MaLR 3 357 -13 8 654 601 234 0 33 chr4 9061290 9061440 -146568680 + B1_Mur3 SINE Alu 5 149 0 8 654 426 274 52 7 chr4 9061553 9061689 -146568431 - ID_B1 SINE B4 -1 223 82 8 654 375 266 29 86 chr4 9061989 9062129 -146567991 - Tigger7 DNA MER2_type -9 2482 2351 8 654 1214 320 35 7 chr4 9062255 9062689 -146567431 - Tigger7 DNA MER2_type -2026 465 20 8 654 459 0 0 0 chr4 9063737 9063788 -146566332 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 8 654 342 0 0 0 chr4 9064745 9064783 -146565337 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 654 180 77 0 0 chr4 9064989 9065015 -146565105 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 8 654 1780 137 13 118 chr4 9065797 9065940 -146564180 - RMER19C LTR ERVK 0 611 479 8 654 1913 171 0 18 chr4 9065940 9066274 -146563846 + Lx4A LINE L1 6728 7055 -3 8 654 1780 137 13 118 chr4 9066274 9066520 -146563600 - RMER19C LTR ERVK -133 478 263 8 654 494 25 37 12 chr4 9066547 9066628 -146563492 + (TTA)n Simple_repeat Simple_repeat 2 84 0 9 654 1074 58 44 0 chr4 9066630 9066767 -146563353 - B1_Mus2 SINE Alu 0 147 5 9 654 771 59 0 0 chr4 9067507 9067608 -146562512 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 9 654 1780 208 166 3 chr4 9067667 9068283 -146561837 - RMER1B Other Other -46 1020 47 9 654 357 306 27 40 chr4 9068928 9069078 -146561042 + B1F1 SINE Alu 1 148 -1 9 654 212 316 26 0 chr4 9070348 9070424 -146559696 + (TCTG)n Simple_repeat Simple_repeat 1 78 0 9 654 1125 110 0 2 chr4 9070605 9071023 -146559097 + (CA)n Simple_repeat Simple_repeat 1 416 0 9 654 259 242 50 50 chr4 9072253 9072353 -146557767 + MTEb LTR MaLR 278 377 -2 9 654 35 41 0 0 chr4 9072373 9072422 -146557698 + AT_rich Low_complexity Low_complexity 1 49 0 9 654 468 0 0 0 chr4 9072614 9072666 -146557454 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 654 325 339 85 66 chr4 9072679 9072951 -146557169 - RMER13B LTR ERVK -43 865 584 1 654 777 192 16 31 chr4 9073114 9073307 -146556813 - RMER13A LTR ERVK -573 287 98 1 654 590 274 91 53 chr4 9073370 9073744 -146556376 - RMER17A-int LTR ERVK -4 1724 1337 1 654 907 113 7 13 chr4 9074001 9074154 -146555966 + (GGGA)n Simple_repeat Simple_repeat 4 155 0 1 654 359 269 17 9 chr4 9074241 9074357 -146555763 - MLT1A0 LTR MaLR -21 344 228 1 654 1140 279 6 42 chr4 9076242 9076553 -146553567 + Lx5 LINE L1 6550 6849 -201 1 654 216 0 0 0 chr4 9076684 9076708 -146553412 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 1 654 748 250 12 0 chr4 9076868 9077040 -146553080 - B3A SINE B2 -23 175 2 1 654 37505 61 1 14 chr4 9077593 9083771 -146546349 - L1Md_F2 LINE L1 0 6582 483 1 654 1456 279 98 95 chr4 9083768 9084050 -146546070 + Lx8 LINE L1 6455 6704 -769 1 654 423 0 0 0 chr4 9084050 9084097 -146546023 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 654 1456 279 98 95 chr4 9084097 9084456 -146545664 + Lx8 LINE L1 6705 7098 -375 1 654 255 278 28 0 chr4 9084605 9084677 -146545443 + L1M5 LINE L1 4962 5035 -1111 1 654 561 151 17 8 chr4 9084918 9085038 -146545082 + GA-rich Low_complexity Low_complexity 4 124 0 1 654 216 297 31 0 chr4 9085261 9085325 -146544795 + CT-rich Low_complexity Low_complexity 4 69 0 1 654 332 291 70 35 chr4 9085326 9085440 -146544680 - PB1D7 SINE Alu 0 120 3 1 654 2333 65 3 48 chr4 9085859 9086196 -146543924 - RLTRETN_Mm LTR ERVK 0 322 1 1 654 245 164 17 68 chr4 9087213 9087272 -146542848 - B4 SINE B4 -66 226 171 1 654 1182 163 222 14 chr4 9087272 9087565 -146542555 - ORR1B1 LTR MaLR 0 394 41 1 654 569 250 75 0 chr4 9087572 9087732 -146542388 - B4 SINE B4 -117 175 4 1 654 785 282 85 32 chr4 9087897 9088297 -146541823 - RMER5 LTR ERV1 -2 532 112 1 654 1069 87 120 17 chr4 9089398 9089573 -146540547 - B2_Mm2 SINE B2 -1 194 2 1 654 817 285 131 26 chr4 9089930 9090369 -146539751 + L1MA9 LINE L1 4726 5204 -936 1 654 318 87 0 0 chr4 9090369 9090415 -146539705 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 654 817 251 162 19 chr4 9090415 9090676 -146539444 + L1MA9 LINE L1 5205 5516 -655 1 654 517 238 71 12 chr4 9090766 9090936 -146539184 + L1MA9 LINE L1 5659 5838 -474 1 654 28 71 0 0 chr4 9090944 9091000 -146539120 + AT_rich Low_complexity Low_complexity 1 56 0 1 654 233 274 0 35 chr4 9091000 9091087 -146539033 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 654 673 292 22 17 chr4 9091087 9091268 -146538852 - B3A SINE B2 -16 182 1 1 654 745 278 88 48 chr4 9091269 9091688 -146538432 + L1MA9 LINE L1 5826 6261 -51 1 654 3843 118 38 31 chr4 9091684 9092295 -146537825 + L1VL4 LINE L1 193 807 -5495 1 654 16370 147 12 41 chr4 9092268 9094484 -146535636 + Lx LINE L1 3038 5252 -631 1 654 1135 82 7 0 chr4 9094484 9094631 -146535489 + B1_Mus1 SINE Alu 1 148 0 1 654 16370 147 12 41 chr4 9094631 9094690 -146535430 + Lx LINE L1 5253 5262 -621 1 654 1578 17 0 3 chr4 9094690 9095049 -146535071 + (GAA)n Simple_repeat Simple_repeat 1 357 0 1 654 16370 138 22 14 chr4 9095049 9096496 -146533624 + Lx LINE L1 5263 6641 -13 1 654 261 267 0 25 chr4 9096601 9096720 -146533400 + GA-rich Low_complexity Low_complexity 5 120 0 1 654 432 250 43 0 chr4 9096844 9096960 -146533160 - L1MA10 LINE L1 -4 6330 6210 1 654 221 250 0 19 chr4 9097106 9097159 -146532961 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 1 654 1576 204 71 13 chr4 9098744 9099137 -146530983 + RLTR40 LTR ERVK 16 431 -386 1 654 4256 190 81 98 chr4 9099137 9100199 -146529921 - RMER1B Other Other -22 1044 1 1 654 1565 171 61 68 chr4 9100240 9100635 -146529485 + RLTR40 LTR ERVK 404 795 -22 1 654 942 35 0 0 chr4 9100712 9100826 -146529294 + (TG)n Simple_repeat Simple_repeat 2 115 0 1 654 384 272 23 39 chr4 9100835 9100965 -146529155 - RSINE1 SINE B4 -36 129 2 1 654 456 323 104 62 chr4 9101317 9101673 -146528447 + MLT1A LTR MaLR 4 374 0 1 654 232 240 0 0 chr4 9101697 9101747 -146528373 + L1MEc LINE L1 166 215 -6185 1 654 392 260 0 20 chr4 9101747 9101849 -146528271 + MTC LTR MaLR 1 100 -321 1 654 2942 26 43 0 chr4 9101849 9102198 -146527922 - L1_Mus1 LINE L1 -585 5981 5618 1 654 4432 74 2 0 chr4 9102198 9102768 -146527352 + L1_Mus1 LINE L1 5997 6567 0 1 654 1749 174 9 9 chr4 9102779 9103099 -146527021 + MTC LTR MaLR 100 419 -2 1 654 773 326 125 15 chr4 9103166 9103845 -146526275 + L1MEc LINE L1 325 1078 -5322 1 654 1358 268 18 35 chr4 9104191 9104589 -146525531 + Lx9 LINE L1 6898 7288 -356 1 654 446 300 12 18 chr4 9105190 9105353 -146524767 + Lx9 LINE L1 7300 7461 -183 1 654 366 143 0 0 chr4 9105355 9105418 -146524702 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 654 724 327 81 6 chr4 9105816 9106148 -146523972 + MLT1A0 LTR MaLR 4 360 -5 1 654 1534 228 92 87 chr4 9106228 9106276 -146523844 - RMER15 LTR ERVL -19 556 508 1 654 2319 131 89 0 chr4 9106276 9106636 -146523484 - ORR1B1 LTR MaLR -2 392 1 1 654 1534 228 92 87 chr4 9106636 9106671 -146523449 - RMER15 LTR ERVL -68 507 480 1 654 6452 59 78 2 chr4 9106671 9107501 -146522619 + RLTR13B1 LTR ERVK 1 893 0 1 654 1534 228 92 87 chr4 9107501 9107948 -146522172 - RMER15 LTR ERVL -96 479 22 1 654 422 351 68 47 chr4 9108061 9108399 -146521721 + MLT1C LTR MaLR 115 459 -8 1 654 433 259 14 0 chr4 9109140 9109241 -146520879 - PB1D10 SINE Alu -41 108 4 1 654 222 192 0 0 chr4 9109272 9109324 -146520796 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 654 998 155 160 0 chr4 9109827 9110021 -146520099 - URR1B DNA MER1_type 0 225 1 1 654 213 305 53 0 chr4 9111473 9111568 -146518552 + MIRc SINE MIR 169 268 0 1 654 21 0 0 0 chr4 9113048 9113069 -146517051 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 342 0 0 0 chr4 9113713 9113751 -146516369 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 654 1049 170 35 0 chr4 9114494 9114694 -146515426 - URR1B DNA MER1_type -2 223 17 1 654 23 68 0 0 chr4 9115292 9115336 -146514784 + AT_rich Low_complexity Low_complexity 1 44 0 1 654 3549 155 37 74 chr4 9115354 9115783 -146514337 - Lx4B LINE L1 -2 7056 6610 1 654 4067 49 0 14 chr4 9115783 9116281 -146513839 + L1_Mus2 LINE L1 6076 6566 0 1 654 3549 178 46 51 chr4 9116281 9116747 -146513373 - Lx4B LINE L1 -449 6609 5852 1 654 473 162 25 0 chr4 9116726 9116806 -146513314 - Lx4B LINE L1 -136 6922 6841 1 654 2200 173 7 21 chr4 9116807 9117378 -146512742 - L1_Mur2 LINE L1 -4414 1463 893 1 654 4570 132 12 34 chr4 9117378 9118205 -146511915 + RMER17D2 LTR ERVK 1 809 0 1 654 2137 206 6 43 chr4 9118205 9118277 -146511843 - L1_Mur2 LINE L1 -6092 892 833 1 654 374 196 52 35 chr4 9119141 9119257 -146510863 + ORR1D2 LTR MaLR 251 368 -2 1 654 210 143 0 0 chr4 9119397 9119432 -146510688 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 654 339 342 101 38 chr4 9119618 9119855 -146510265 - Lx8 LINE L1 -73 7400 7149 1 654 206 62 0 30 chr4 9119908 9119941 -146510179 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 654 1901 262 139 15 chr4 9120723 9121492 -146508628 + RCHARR1 DNA MER1_type 67 931 -43 1 654 1565 219 47 33 chr4 9121492 9121922 -146508198 - RMER10A LTR ERVL 0 442 7 1 654 1466 69 21 0 chr4 9121931 9122120 -146508000 - B2_Mm2 SINE B2 -1 194 2 1 654 381 179 11 45 chr4 9122145 9122233 -146507887 - L1MB2 LINE L1 -301 5870 5786 1 654 348 328 151 4 chr4 9122280 9122470 -146507650 - L1MB2 LINE L1 -494 5690 5494 1 654 1221 48 0 0 chr4 9122558 9122703 -146507417 - B1_Mus2 SINE Alu -2 145 1 1 654 603 199 0 0 chr4 9123252 9123265 -146506855 + (TG)n Simple_repeat Simple_repeat 2 14 0 1 654 624 38 0 0 chr4 9123265 9123344 -146506776 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 654 603 199 0 0 chr4 9123344 9123496 -146506624 + (TG)n Simple_repeat Simple_repeat 2 153 0 1 654 227 252 67 48 chr4 9124549 9124653 -146505467 - L1MC LINE L1 -1967 5818 5713 1 654 1006 181 351 4 chr4 9124783 9125054 -146505066 + ORR1B2 LTR MaLR 1 365 -2 1 654 6852 89 1 0 chr4 9125104 9126007 -146504113 - L1_Mus1 LINE L1 -97 5786 4883 1 654 6061 64 17 1 chr4 9126009 9126777 -146503343 + L1_Mus1 LINE L1 5779 6558 -9 1 654 285 29 0 0 chr4 9126780 9126814 -146503306 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 654 189 0 0 0 chr4 9127907 9127928 -146502192 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 1 654 1068 270 80 3 chr4 9128333 9128667 -146501453 + MLT1B LTR MaLR 15 374 -16 1 654 705 272 30 30 chr4 9128667 9128864 -146501256 + MTEa LTR MaLR 1 197 -182 1 654 414 281 54 1 chr4 9128953 9129084 -146501036 + MTEa LTR MaLR 214 376 -3 1 654 207 176 0 0 chr4 9129422 9129456 -146500664 + T-rich Low_complexity Low_complexity 3 36 0 1 654 590 188 37 15 chr4 9130607 9130742 -146499378 - MTD LTR MaLR -13 406 269 1 654 396 0 0 0 chr4 9131852 9131896 -146498224 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 654 2163 156 95 10 chr4 9133065 9133453 -146496667 + MTC LTR MaLR 1 421 0 1 654 611 286 30 40 chr4 9134632 9134832 -146495288 - B3A SINE B2 0 198 1 1 654 1134 0 0 0 chr4 9134940 9135066 -146495054 + (TC)n Simple_repeat Simple_repeat 1 126 0 1 654 314 264 132 0 chr4 9135068 9135159 -146494961 - PB1D7 SINE Alu -13 107 5 1 654 2926 61 45 10 chr4 9135276 9135673 -146494447 + RLTR10A LTR ERVK 1 411 0 1 654 229 178 0 0 chr4 9136102 9136147 -146493973 + U5 snRNA snRNA 1 45 -71 1 654 345 321 9 35 chr4 9136621 9136737 -146493383 + PB1 SINE Alu 3 115 -12 1 654 965 158 6 0 chr4 9136915 9137092 -146493028 + CT-rich Low_complexity Low_complexity 3 180 0 1 654 574 191 9 0 chr4 9137149 9137254 -146492866 + U6 snRNA snRNA 1 106 -1 1 654 736 288 137 31 chr4 9138852 9139272 -146490848 - L1MA7 LINE L1 -199 6092 5606 1 654 3936 169 123 15 chr4 9139290 9140109 -146490011 - RMER13B LTR ERVK 0 908 1 1 654 855 223 72 23 chr4 9140121 9140207 -146489913 - L1MA7 LINE L1 -685 5606 5509 1 654 407 185 0 0 chr4 9140207 9140272 -146489848 - ID4 SINE ID -14 69 5 1 654 855 223 72 23 chr4 9140272 9140447 -146489673 - L1MA7 LINE L1 -783 5508 5332 1 654 211 216 39 0 chr4 9140511 9140562 -146489558 - L2a LINE L2 0 3426 3374 1 654 550 277 123 55 chr4 9140982 9141307 -146488813 + MTD LTR MaLR 1 347 -72 1 654 204 200 0 0 chr4 9141319 9141359 -146488761 + G-rich Low_complexity Low_complexity 2 41 0 1 654 822 179 0 7 chr4 9141367 9141508 -146488612 - B1_Mus1 SINE Alu -8 140 1 1 654 6263 43 5 0 chr4 9141704 9142450 -146487670 - L1Md_F2 LINE L1 0 6582 5833 1 654 192 111 0 0 chr4 9142507 9142543 -146487577 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 654 186 239 22 0 chr4 9142588 9142634 -146487486 + MIRc SINE MIR 82 128 -140 1 654 611 323 89 7 chr4 9142961 9143254 -146486866 - MLT1A0 LTR MaLR -30 335 19 2 654 1357 252 47 25 chr4 9143873 9144235 -146485885 + ORR1D2 LTR MaLR 1 370 0 2 654 2799 99 68 0 chr4 9144985 9145398 -146484722 + BGLII_B LTR ERVK 1 441 0 2 654 342 0 0 0 chr4 9146794 9146832 -146483288 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 654 459 78 0 0 chr4 9149537 9149603 -146480517 - Lx LINE L1 -244 6338 6267 2 654 2486 98 11 25 chr4 9149598 9149761 -146480359 + Lx4A LINE L1 5259 5420 -457 2 654 2041 142 28 3 chr4 9149761 9150080 -146480040 + ORR1A4 LTR MaLR 1 327 -2 2 654 2486 98 11 25 chr4 9150080 9150283 -146479837 + Lx4A LINE L1 5421 5620 -257 2 654 328 54 98 0 chr4 9150283 9150375 -146479745 + (CAAAC)n Simple_repeat Simple_repeat 5 105 0 2 654 3443 155 24 7 chr4 9150392 9150976 -146479144 + Lx4A LINE L1 5819 6412 -646 2 654 235 300 33 0 chr4 9151422 9151512 -146478608 + CT-rich Low_complexity Low_complexity 5 97 0 2 654 1282 221 97 0 chr4 9152629 9152960 -146477160 - Lx9 LINE L1 -5 7639 7277 2 654 5811 100 24 0 chr4 9152987 9153810 -146476310 - Lx3A LINE L1 -1 6980 6138 2 654 2510 258 101 15 chr4 9153883 9154383 -146475737 - Lx6 LINE L1 -838 6622 6093 2 654 183 42 0 0 chr4 9154383 9154407 -146475713 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 654 2510 258 101 15 chr4 9154407 9154622 -146475498 - Lx6 LINE L1 -1368 6092 5846 2 654 709 303 145 40 chr4 9154761 9155215 -146474905 + RMER13A LTR ERVK 162 663 -197 2 654 7307 150 128 8 chr4 9155320 9156373 -146473747 - L1_Mur3 LINE L1 -33 5847 4626 2 654 216 0 0 0 chr4 9156373 9156397 -146473723 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 654 7307 150 128 8 chr4 9156397 9156743 -146473377 - L1_Mur3 LINE L1 -1255 4625 4281 2 654 1225 202 102 31 chr4 9156746 9157130 -146472990 - L1_Mur3 LINE L1 -5747 1339 938 2 654 4730 33 62 7 chr4 9157130 9157708 -146472412 - L1Md_F2 LINE L1 0 6582 5973 2 654 1225 186 120 35 chr4 9157708 9157841 -146472279 - L1_Mur3 LINE L1 -6723 1005 859 2 654 545 309 36 13 chr4 9157882 9158190 -146471930 - L1_Mur3 LINE L1 -7287 441 127 2 654 498 96 0 0 chr4 9158347 9158420 -146471700 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 2 654 821 117 16 0 chr4 9158427 9158555 -146471565 - B1_Mus1 SINE Alu 0 148 19 2 654 302 330 11 0 chr4 9158711 9158802 -146471318 + Lx8 LINE L1 7104 7195 -278 2 654 2768 199 98 36 chr4 9159683 9160555 -146469565 - RMER1B Other Other -4 1062 44 2 654 601 146 117 0 chr4 9161034 9161137 -146468983 - B1_Mur1 SINE Alu -6 143 29 2 654 249 246 62 0 chr4 9161138 9161203 -146468917 - L1MB4 LINE L1 -209 5971 5903 2 654 480 321 0 0 chr4 9163670 9163804 -146466316 + B1F SINE Alu 10 143 -6 2 654 658 141 18 24 chr4 9165453 9165620 -146464500 + CT-rich Low_complexity Low_complexity 3 168 0 2 654 626 99 126 0 chr4 9166269 9166380 -146463740 + L1Md_F2 LINE L1 6454 6578 -4 2 654 276 337 31 72 chr4 9166742 9166937 -146463183 + MLT1A0 LTR MaLR 2 188 -177 2 654 248 231 100 71 chr4 9167122 9167262 -146462858 - RLTR24 LTR ERV1 -232 297 154 2 654 2930 128 105 14 chr4 9167948 9168453 -146461667 + RLTR31_Mur LTR ERVK 3 553 0 2 654 3860 39 7 0 chr4 9169217 9169656 -146460464 + L1Md_F2 LINE L1 6141 6582 0 2 654 183 42 0 0 chr4 9169800 9169824 -146460296 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 654 1254 34 7 0 chr4 9169829 9169975 -146460145 - B1_Mm SINE Alu 0 147 1 2 654 264 285 118 37 chr4 9170746 9170881 -146459239 + ORR1C1 LTR MaLR 43 188 -190 2 654 304 368 56 23 chr4 9171125 9171339 -146458781 + L2 LINE L2 2228 2448 -971 2 654 265 194 15 75 chr4 9171661 9171728 -146458392 - ORR1E LTR MaLR 0 359 297 2 654 451 252 84 0 chr4 9171795 9171914 -146458206 - ORR1E LTR MaLR -222 137 9 2 654 511 198 252 13 chr4 9172268 9172427 -146457693 + ID_B1 SINE B4 20 216 -8 2 654 478 188 12 0 chr4 9173149 9173234 -146456886 + ORR1D2 LTR MaLR 1 86 -284 2 654 1074 184 11 0 chr4 9173292 9173482 -146456638 - RLTR12A LTR ERVK -9 559 368 2 654 708 222 86 59 chr4 9173497 9173684 -146456436 + RLTR12A LTR ERVK 163 354 -214 2 654 1729 115 8 4 chr4 9173700 9173954 -146456166 - RLTR12A LTR ERVK -313 255 1 2 655 2033 102 3 14 chr4 9175442 9175730 -146454390 + Lx LINE L1 6370 6654 0 2 655 492 18 0 0 chr4 9175890 9175947 -146454173 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 655 669 286 54 68 chr4 9176588 9176884 -146453236 + B4 SINE B4 1 292 0 2 655 279 0 0 0 chr4 9176884 9176915 -146453205 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 655 349 102 0 0 chr4 9176971 9177020 -146453100 + HAL1-3A_ME LINE L1 1976 2024 -834 2 655 226 377 43 49 chr4 9177585 9177769 -146452351 + L2c LINE L2 3167 3349 -38 2 655 418 268 46 54 chr4 9178656 9178786 -146451334 - B3A SINE B2 0 198 70 2 655 4416 196 12 18 chr4 9178787 9179586 -146450534 + Lx5 LINE L1 6256 7050 0 2 655 4775 204 48 14 chr4 9179698 9179837 -146450283 - RMER1B Other Other 0 1066 927 2 655 213 39 0 0 chr4 9179837 9179863 -146450257 + (TAAG)n Simple_repeat Simple_repeat 2 27 0 2 655 4775 204 48 14 chr4 9179863 9180708 -146449412 - RMER1B Other Other -140 926 49 2 655 4336 31 2 0 chr4 9180794 9181272 -146448848 - L1Md_A LINE L1 0 6582 6104 2 655 288 0 0 0 chr4 9181290 9181322 -146448798 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 655 432 330 154 23 chr4 9181322 9181750 -146448370 + Lx8 LINE L1 6990 7473 0 2 655 21 0 0 0 chr4 9181784 9181805 -146448315 + AT_rich Low_complexity Low_complexity 1 21 0 2 655 204 224 0 33 chr4 9181956 9182016 -146448104 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 655 216 221 38 19 chr4 9182064 9182221 -146447899 + (CATA)n Simple_repeat Simple_repeat 3 162 0 2 655 759 257 67 40 chr4 9183468 9183691 -146446429 + B4A SINE B4 1 229 -63 2 655 378 57 0 0 chr4 9183718 9183771 -146446349 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 655 225 268 25 82 chr4 9183858 9183980 -146446140 + Lx8 LINE L1 7352 7466 -7 2 655 25 0 0 0 chr4 9184006 9184031 -146446089 + AT_rich Low_complexity Low_complexity 1 25 0 2 655 2888 34 9 3 chr4 9184540 9184865 -146445255 - IAPLTR2b LTR ERVK 0 327 1 2 655 1848 197 57 12 chr4 9186041 9186463 -146443657 - Lx5 LINE L1 -639 6411 5971 2 655 3302 151 1 3 chr4 9186652 9187263 -146442857 - Lx5 LINE L1 -1077 5973 5358 2 655 2667 204 56 71 chr4 9187257 9187902 -146442218 + Lx5 LINE L1 6413 7047 -3 2 655 325 335 117 22 chr4 9188064 9188287 -146441833 + MIRb SINE MIR 25 268 0 2 655 3619 29 32 0 chr4 9188416 9188824 -146441296 - L1Md_F3 LINE L1 -15 6569 6149 2 655 724 43 0 0 chr4 9188824 9188913 -146441207 + L1Md_F3 LINE L1 6066 6151 -503 2 655 485 233 60 99 chr4 9190270 9190391 -146439729 + B3 SINE B2 75 197 -19 2 655 963 119 11 6 chr4 9190412 9190589 -146439531 + (GAA)n Simple_repeat Simple_repeat 1 178 0 2 655 2703 203 157 17 chr4 9190860 9191447 -146438673 + Lx9 LINE L1 6830 7517 -127 2 655 264 122 0 0 chr4 9191447 9191488 -146438632 + (TATG)n Simple_repeat Simple_repeat 3 43 0 2 655 2703 203 157 17 chr4 9191488 9191607 -146438513 + Lx9 LINE L1 7518 7635 -9 2 655 1790 126 0 0 chr4 9191780 9192035 -146438085 - Lx2 LINE L1 -532 6465 6211 2 655 945 160 64 39 chr4 9192035 9192256 -146437864 + Lx2 LINE L1 5920 6183 -814 2 655 901 250 10 35 chr4 9192283 9192486 -146437634 - B3A SINE B2 0 198 1 2 655 276 376 78 71 chr4 9192592 9193042 -146437078 + MLT1J-int LTR MaLR 852 1304 -83 2 655 1099 131 6 0 chr4 9193160 9193328 -146436792 + URR1A DNA MER1_type 58 226 0 2 655 476 305 8 8 chr4 9193477 9193596 -146436524 + ID_B1 SINE B4 94 212 -12 2 655 450 285 53 23 chr4 9193596 9193610 -146436510 + B1F1 SINE Alu 13 149 0 2 655 324 0 0 0 chr4 9194015 9194051 -146436069 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 655 229 260 136 49 chr4 9194121 9194202 -146435918 - PB1D10 SINE Alu -27 90 3 2 655 1527 256 56 7 chr4 9194247 9194712 -146435408 + L1MA4A LINE L1 5459 5946 -357 2 655 211 211 0 0 chr4 9195202 9195240 -146434880 + GA-rich Low_complexity Low_complexity 5 42 0 2 655 210 128 51 0 chr4 9195807 9195846 -146434274 + CT-rich Low_complexity Low_complexity 2 42 0 2 655 21 0 0 0 chr4 9196199 9196220 -146433900 + AT_rich Low_complexity Low_complexity 1 21 0 2 655 376 311 20 20 chr4 9200039 9200190 -146429930 + CT-rich Low_complexity Low_complexity 3 153 0 2 655 748 280 128 23 chr4 9200506 9200897 -146429223 - L1MA5 LINE L1 -4 6296 5865 2 655 362 292 66 0 chr4 9202412 9202518 -146427602 + PB1D10 SINE Alu 3 115 -2 2 655 476 271 37 0 chr4 9202923 9203030 -146427090 - PB1D7 SINE Alu -7 113 3 2 655 336 219 25 12 chr4 9203102 9203264 -146426856 + (TGAG)n Simple_repeat Simple_repeat 4 167 0 2 655 285 29 0 0 chr4 9203325 9203359 -146426761 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 655 27 29 0 0 chr4 9204072 9204106 -146426014 + AT_rich Low_complexity Low_complexity 1 34 0 2 655 1167 61 0 75 chr4 9205773 9205932 -146424188 + B1_Mus2 SINE Alu 1 147 0 2 655 287 49 71 36 chr4 9205932 9206016 -146424104 + A-rich Low_complexity Low_complexity 4 90 0 2 655 352 329 91 23 chr4 9206610 9206831 -146423289 - L2 LINE L2 -833 2586 2351 2 655 272 330 66 0 chr4 9206978 9207084 -146423036 - L2 LINE L2 -1303 2116 2004 2 655 2065 196 23 23 chr4 9207150 9207546 -146422574 - MTC LTR MaLR 0 421 26 2 655 3590 87 7 0 chr4 9209901 9210350 -146419770 - L1_Mus1 LINE L1 -1 6566 6115 2 655 194 329 25 25 chr4 9210481 9210562 -146419558 - MIR SINE MIR -173 89 9 2 655 315 0 0 0 chr4 9211087 9211122 -146418998 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 2 655 261 241 17 0 chr4 9211635 9211693 -146418427 + MIR SINE MIR 87 145 -63 2 655 333 251 151 53 chr4 9213991 9214197 -146415923 + MER96B DNA hAT 1 226 -191 2 655 450 0 0 0 chr4 9214266 9214316 -146415804 + (CAA)n Simple_repeat Simple_repeat 1 50 0 2 655 585 0 0 0 chr4 9214316 9214381 -146415739 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 655 540 0 0 0 chr4 9214662 9214722 -146415398 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 655 216 0 0 0 chr4 9214722 9214745 -146415375 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 655 474 18 0 0 chr4 9214745 9214799 -146415321 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 655 210 378 24 12 chr4 9215484 9215608 -146414512 - MIRb SINE MIR -96 166 52 3 655 974 314 24 78 chr4 9215856 9216267 -146413853 - MTD LTR MaLR -14 405 17 3 655 1412 231 124 19 chr4 9217389 9217768 -146412352 - MTD LTR MaLR 0 419 1 3 655 34 0 0 0 chr4 9217770 9217804 -146412316 + AT_rich Low_complexity Low_complexity 1 34 0 3 655 432 0 0 0 chr4 9217836 9217884 -146412236 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 655 4415 213 43 75 chr4 9218780 9219892 -146410228 - Lx7 LINE L1 0 7696 6621 3 655 13236 167 65 27 chr4 9219899 9223475 -146406645 - L1_Mur3 LINE L1 -1794 4086 366 3 655 185 256 22 109 chr4 9224091 9224183 -146405937 - L2c LINE L2 -203 3184 3101 3 655 212 0 36 0 chr4 9226209 9226237 -146403883 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 655 386 313 92 34 chr4 9226237 9226356 -146403764 - PB1D10 SINE Alu 0 127 2 3 655 615 323 106 36 chr4 9226786 9227143 -146402977 - MLT1A1 LTR MaLR 0 408 27 3 655 490 67 27 0 chr4 9227653 9227728 -146402392 + (GGA)n Simple_repeat Simple_repeat 2 78 0 3 655 612 40 0 0 chr4 9228196 9228271 -146401849 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 3 655 228 67 0 0 chr4 9228703 9228733 -146401387 + (TCC)n Simple_repeat Simple_repeat 2 31 0 3 655 222 253 20 139 chr4 9228744 9228845 -146401275 - PB1D9 SINE Alu -20 100 12 3 655 299 191 15 0 chr4 9229169 9229237 -146400883 + CT-rich Low_complexity Low_complexity 2 70 0 3 655 225 362 66 76 chr4 9229589 9229891 -146400229 + L2a LINE L2 3126 3424 -2 3 655 251 304 104 91 chr4 9231050 9231271 -146398849 - MLT1H LTR MaLR -9 480 257 3 655 1730 340 91 60 chr4 9231322 9231620 -146398500 - MLT1H-int LTR MaLR -192 1217 904 3 655 619 228 257 0 chr4 9231620 9231791 -146398329 + B3 SINE B2 2 216 0 3 655 1730 340 91 60 chr4 9231791 9232665 -146397455 - MLT1H-int LTR MaLR -506 903 8 3 655 351 337 120 33 chr4 9232694 9232902 -146397218 - MLT1H LTR MaLR -20 469 277 3 655 446 282 54 9 chr4 9232902 9233013 -146397107 - PB1D10 SINE Alu -1 116 1 3 655 351 339 111 78 chr4 9233013 9233269 -146396851 - MLT1H LTR MaLR -273 276 33 3 655 2226 165 65 15 chr4 9233786 9234187 -146395933 + MTC LTR MaLR 1 421 0 3 655 274 241 113 26 chr4 9235657 9235772 -146394348 - HAL1 LINE L1 -908 1599 1475 3 655 843 152 0 0 chr4 9235997 9236142 -146393978 + CT-rich Low_complexity Low_complexity 2 146 0 3 655 215 266 31 0 chr4 9238203 9238267 -146391853 - B1F SINE Alu -78 71 6 3 655 21 36 0 0 chr4 9238304 9238332 -146391788 + AT_rich Low_complexity Low_complexity 1 28 0 3 655 879 244 45 0 chr4 9238415 9238616 -146391504 - B3 SINE B2 -6 210 1 3 655 2856 193 28 58 chr4 9238763 9239362 -146390758 + Lx5 LINE L1 6470 7050 0 3 655 882 286 17 33 chr4 9239797 9240097 -146390023 - MER92B LTR ERV1 -341 295 1 3 655 296 145 33 25 chr4 9241280 9241400 -146388720 + (TG)n Simple_repeat Simple_repeat 1 121 0 3 655 216 322 75 63 chr4 9242451 9242610 -146387510 - MIRb SINE MIR -59 209 49 3 655 1699 257 60 21 chr4 9243511 9244024 -146386096 - MT2A LTR ERVL 0 533 1 3 655 1781 248 96 50 chr4 9244061 9244758 -146385362 - L1MA8 LINE L1 -3 6288 5560 3 655 928 282 58 11 chr4 9247078 9247354 -146382766 + B4A SINE B4 1 289 -3 3 655 237 278 119 59 chr4 9248215 9248451 -146381669 - MIR SINE MIR -1 267 29 3 655 282 87 0 0 chr4 9248470 9248516 -146381604 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 655 270 0 0 0 chr4 9249643 9249673 -146380447 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 655 184 154 39 0 chr4 9249723 9249775 -146380345 + GA-rich Low_complexity Low_complexity 2 55 0 3 655 222 275 12 24 chr4 9250931 9251013 -146379107 + CT-rich Low_complexity Low_complexity 1 81 0 3 655 321 26 0 0 chr4 9251018 9251056 -146379064 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 655 180 0 0 0 chr4 9252449 9252469 -146377651 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 655 425 302 19 0 chr4 9252695 9252801 -146377319 + PB1D7 SINE Alu 2 109 -11 3 655 238 182 152 0 chr4 9252854 9252920 -146377200 + L1MD2 LINE L1 1004 1079 -5461 3 655 4996 156 37 7 chr4 9253061 9253943 -146376177 - L1_Mur3 LINE L1 -1306 4574 3666 3 655 458 281 0 0 chr4 9253940 9254061 -146376059 - L1_Mur3 LINE L1 -7416 312 192 3 655 486 273 20 66 chr4 9254084 9254365 -146375755 + L1MD2 LINE L1 2319 2580 -4053 3 655 1169 114 97 0 chr4 9254365 9254540 -146375580 + B2_Mm1t SINE B2 2 193 0 3 655 1232 64 0 0 chr4 9254541 9254682 -146375438 + B1_Mm SINE Alu 1 141 -6 3 655 257 0 30 0 chr4 9254685 9254718 -146375402 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 655 486 298 104 97 chr4 9254718 9255202 -146374918 + L1MD2 LINE L1 2581 3080 -3457 3 655 23 54 0 0 chr4 9255204 9255241 -146374879 + AT_rich Low_complexity Low_complexity 1 37 0 3 655 486 0 0 0 chr4 9255328 9255382 -146374738 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 655 423 202 22 0 chr4 9255415 9255504 -146374616 - Lx9 LINE L1 -171 7473 7383 3 655 400 323 51 10 chr4 9255502 9255699 -146374421 + L1MD2 LINE L1 3080 3284 -3253 3 655 576 314 39 44 chr4 9255720 9255923 -146374197 - MTEa LTR MaLR -162 217 16 3 655 794 259 101 54 chr4 9256334 9256612 -146373508 + B4A SINE B4 2 292 0 3 655 307 275 83 57 chr4 9256640 9256833 -146373287 + L1MD2 LINE L1 3375 3572 -2965 3 655 1217 228 5 0 chr4 9256858 9257073 -146373047 + B3 SINE B2 1 216 0 3 655 564 316 88 57 chr4 9257227 9257684 -146372436 + L1MD2 LINE L1 5912 6382 -368 3 655 245 197 14 27 chr4 9258132 9258205 -146371915 + L1ME2z LINE L1 6373 6444 0 3 655 236 207 174 42 chr4 9258263 9258370 -146371750 + MIRb SINE MIR 45 174 -34 3 655 241 290 78 31 chr4 9258366 9258494 -146371626 - L3b LINE CR1 -114 368 235 3 655 489 310 86 0 chr4 9258900 9259087 -146371033 - MER2 DNA MER2_type -49 296 94 3 655 486 292 71 22 chr4 9260049 9260092 -146370028 - MER31B LTR ERV1 -3 463 425 3 655 225 0 0 0 chr4 9260092 9260117 -146370003 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 655 486 299 62 33 chr4 9260117 9260283 -146369837 - MER31B LTR ERV1 -42 424 254 3 655 657 149 0 0 chr4 9260901 9261015 -146369105 + (GGGGA)n Simple_repeat Simple_repeat 1 114 0 3 655 306 106 0 0 chr4 9263732 9263779 -146366341 + (TGG)n Simple_repeat Simple_repeat 1 47 0 3 655 201 146 0 0 chr4 9263790 9263838 -146366282 + (CAGAGA)n Simple_repeat Simple_repeat 3 50 0 3 655 26 0 0 0 chr4 9264170 9264196 -146365924 + AT_rich Low_complexity Low_complexity 1 26 0 3 655 245 286 169 0 chr4 9264448 9264525 -146365595 + PB1 SINE Alu 1 90 -37 3 655 4350 107 55 40 chr4 9265185 9265835 -146364285 - Lx2A1 LINE L1 -1 7007 6348 3 655 2161 149 126 0 chr4 9267424 9267774 -146362346 - ORR1B1 LTR MaLR 0 394 1 3 655 523 327 53 32 chr4 9267774 9268179 -146361941 - Lx9 LINE L1 -8 7465 7054 3 655 729 152 0 0 chr4 9268176 9268294 -146361826 - L1_Mur2 LINE L1 -852 5025 4908 3 655 2980 166 61 18 chr4 9268293 9268902 -146361218 + Lx5 LINE L1 6397 7058 0 3 655 249 83 0 0 chr4 9268925 9268961 -146361159 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 655 14858 202 46 65 chr4 9268961 9269731 -146360389 - L1_Mur2 LINE L1 -1039 4838 4125 3 655 1250 41 0 14 chr4 9269731 9269878 -146360242 - B1_Mus2 SINE Alu -1 146 2 3 655 14858 202 46 65 chr4 9269878 9272015 -146358105 - L1_Mur2 LINE L1 -1753 4124 2058 3 655 324 0 0 0 chr4 9272015 9272051 -146358069 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 655 14858 215 36 80 chr4 9272051 9273208 -146356912 - L1_Mur2 LINE L1 -3820 2057 892 3 655 1150 62 0 40 chr4 9273937 9274089 -146356031 + B1_Mus2 SINE Alu 1 146 -1 3 655 205 269 0 0 chr4 9274311 9274363 -146355757 - MIRc SINE MIR -7 261 210 3 655 1143 309 80 19 chr4 9274798 9275363 -146354757 - L1MC3 LINE L1 -105 7680 7082 3 655 339 44 0 0 chr4 9275646 9275691 -146354429 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 655 936 228 92 57 chr4 9275695 9276048 -146354072 - RLTR20C LTR ERVK -214 364 1 3 655 585 0 0 0 chr4 9277076 9277141 -146352979 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 3 655 198 213 213 0 chr4 9277271 9277318 -146352802 - L2c LINE L2 -1 3386 3330 3 655 273 29 0 0 chr4 9277393 9277427 -146352693 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 655 360 0 0 0 chr4 9277432 9277472 -146352648 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 655 811 128 7 29 chr4 9279790 9279927 -146350193 - URR1A DNA MER1_type -12 214 81 3 655 228 360 128 19 chr4 9281045 9281201 -146348919 - LTR16A LTR ERVL -180 271 99 3 655 216 0 0 0 chr4 9281564 9281588 -146348532 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 655 506 304 27 0 chr4 9281606 9281718 -146348402 - RSINE1 SINE B4 -48 117 3 3 655 583 319 67 15 chr4 9282818 9283088 -146347032 - B4 SINE B4 -7 285 2 3 655 246 282 115 40 chr4 9283693 9283841 -146346279 - MER5A DNA MER1_type -20 169 11 3 655 192 268 330 0 chr4 9283843 9283940 -146346180 + MIR SINE MIR 14 142 -120 3 655 183 344 43 71 chr4 9285005 9285146 -146344974 - L2c LINE L2 -221 3166 3030 3 655 430 270 53 45 chr4 9285333 9285494 -146344626 - MTEa LTR MaLR 0 379 208 3 655 487 257 85 6 chr4 9285492 9285668 -146344452 + RMER10B LTR ERVL 163 352 -46 3 655 246 165 88 35 chr4 9285827 9285997 -146344123 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 655 280 113 0 40 chr4 9287717 9287791 -146342329 + A-rich Low_complexity Low_complexity 2 72 0 3 655 237 250 18 0 chr4 9288576 9288632 -146341488 + GA-rich Low_complexity Low_complexity 3 59 0 3 655 210 118 0 0 chr4 9289431 9289465 -146340655 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 3 655 271 311 74 139 chr4 9290579 9290790 -146339330 + B3A SINE B2 1 192 -24 3 655 3050 22 3 67 chr4 9290790 9291180 -146338940 - RLTR10B2 LTR ERVK 0 365 1 3 655 267 314 40 134 chr4 9291180 9291192 -146338928 + B3 SINE B2 193 203 -13 3 655 277 189 27 13 chr4 9291225 9291300 -146338820 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 655 365 289 52 45 chr4 9291300 9291434 -146338686 - MER5A DNA MER1_type -53 136 2 3 655 29 60 0 0 chr4 9291952 9292002 -146338118 + AT_rich Low_complexity Low_complexity 1 50 0 3 655 437 225 41 16 chr4 9292133 9292255 -146337865 - L1MB8 LINE L1 -10 6174 6050 4 655 219 388 67 10 chr4 9292260 9292364 -146337756 + B4 SINE B4 2 111 -181 4 655 403 330 42 0 chr4 9292388 9292506 -146337614 + ID_B1 SINE B4 93 215 -9 4 655 845 332 46 53 chr4 9292524 9292893 -146337227 - L1MB8 LINE L1 -141 6037 5669 4 655 604 286 32 13 chr4 9292893 9293049 -146337071 - RSINE1 SINE B4 -2 163 5 4 655 845 297 110 32 chr4 9293049 9294037 -146336083 - L1MB8 LINE L1 -510 5668 4617 4 655 722 181 220 0 chr4 9294203 9294380 -146335740 - B3 SINE B2 0 216 1 4 655 248 281 61 0 chr4 9294471 9294553 -146335567 - L1MD LINE L1 -2029 4117 4031 4 655 24 53 0 0 chr4 9296234 9296272 -146333848 + AT_rich Low_complexity Low_complexity 1 38 0 4 655 185 294 102 61 chr4 9296310 9296408 -146333712 - L2a LINE L2 -295 3131 3030 4 655 296 293 0 0 chr4 9296522 9296597 -146333523 - L2a LINE L2 -540 2879 2805 4 655 430 242 16 39 chr4 9296974 9297103 -146333017 - RLTR42-int LTR ERVK -4177 1345 1220 4 655 289 335 49 31 chr4 9297179 9297342 -146332778 + Tigger5 DNA MER2_type 73 238 -2168 4 655 33 56 0 0 chr4 9297608 9297662 -146332458 + AT_rich Low_complexity Low_complexity 1 54 0 4 655 346 85 34 0 chr4 9297827 9297886 -146332234 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 655 478 282 33 39 chr4 9299630 9299811 -146330309 - Charlie1a DNA MER1_type -847 608 429 4 655 536 317 160 11 chr4 9299834 9300115 -146330005 - Charlie1a DNA MER1_type -1104 351 29 4 655 3233 54 2 2 chr4 9300274 9300700 -146329420 - L1Md_F2 LINE L1 -452 6130 5705 4 655 628 94 38 30 chr4 9300700 9300831 -146329289 + L1Md_F2 LINE L1 6451 6582 0 4 655 1101 220 16 28 chr4 9301851 9302103 -146328017 + Lx6 LINE L1 7202 7450 -10 4 655 379 170 128 0 chr4 9302124 9302218 -146327902 + Lx9 LINE L1 7349 7454 -190 4 655 198 0 0 0 chr4 9302218 9302240 -146327880 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 655 450 0 0 0 chr4 9302268 9302318 -146327802 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 655 212 295 0 40 chr4 9302375 9302474 -146327646 + A-rich Low_complexity Low_complexity 5 99 0 4 655 2254 157 31 8 chr4 9302528 9302913 -146327207 - ORR1B1 LTR MaLR 0 394 1 4 655 748 252 43 10 chr4 9303157 9303365 -146326755 + B3 SINE B2 2 216 0 4 655 22 99 0 0 chr4 9303400 9303471 -146326649 + AT_rich Low_complexity Low_complexity 1 71 0 4 655 1069 103 7 0 chr4 9303637 9303783 -146326337 - B1_Mus1 SINE Alu 0 148 2 4 655 325 365 73 70 chr4 9303898 9304213 -146325907 - L2b LINE L2 -25 3350 3035 4 655 533 298 38 12 chr4 9304261 9304421 -146325699 + B3 SINE B2 19 182 -34 4 655 571 220 29 29 chr4 9304460 9304596 -146325524 + B1_Mus1 SINE Alu 1 136 -12 4 655 750 228 36 72 chr4 9305480 9305674 -146324446 - B3 SINE B2 0 216 30 4 655 344 367 31 27 chr4 9305776 9306000 -146324120 - L1MC4a LINE L1 -2037 5845 5621 4 656 234 207 44 65 chr4 9306558 9306659 -146323461 - PB1D10 SINE Alu -3 124 31 4 656 971 291 58 9 chr4 9307457 9307804 -146322316 + Lx8 LINE L1 6964 7327 -146 4 656 616 254 14 28 chr4 9309318 9309460 -146320660 - RSINE1 SINE B4 -15 150 11 4 656 468 0 0 0 chr4 9309473 9309525 -146320595 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 656 482 252 0 56 chr4 9312688 9312814 -146317306 + RSINE1 SINE B4 45 163 -2 4 656 286 308 115 0 chr4 9313472 9313550 -146316570 + RSINE1 SINE B4 73 159 -6 4 656 3943 226 94 28 chr4 9313859 9315339 -146314781 - RMER1A Other Other -5 1025 7 4 656 1093 304 60 50 chr4 9315678 9316609 -146313511 - L1_Mur3 LINE L1 -518 5782 4819 4 656 3183 251 68 15 chr4 9316610 9317533 -146312587 + RCHARR1 DNA MER1_type 3 974 0 4 656 823 286 60 0 chr4 9317548 9317935 -146312185 - L1_Mur3 LINE L1 -1344 4796 4389 4 656 470 362 23 11 chr4 9318112 9318288 -146311832 - B4A SINE B4 -2 290 113 4 656 1318 250 69 34 chr4 9318387 9318950 -146311170 - L1_Mur3 LINE L1 -1590 4290 3708 4 656 1406 271 83 35 chr4 9318962 9319504 -146310616 - RLTR12A LTR ERVK 0 568 1 4 656 1011 243 9 5 chr4 9319508 9319723 -146310397 - B3 SINE B2 0 216 1 4 656 1098 307 53 48 chr4 9319725 9321006 -146309114 - L1_Mur3 LINE L1 -2390 3753 2391 4 656 2927 54 70 0 chr4 9321006 9321376 -146308744 - MTA_Mm LTR MaLR 0 396 1 4 656 949 316 96 53 chr4 9321376 9321674 -146308446 - L1_Mur3 LINE L1 -3490 2390 2076 4 656 251 300 86 35 chr4 9321944 9322234 -146307886 - L1_Rod LINE L1 -4065 1782 1478 4 656 1448 241 131 24 chr4 9322332 9322703 -146307417 + RLTR16 LTR ERVK 1 400 -105 4 656 423 0 0 0 chr4 9322703 9322750 -146307370 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 656 1448 241 131 24 chr4 9322750 9322829 -146307291 + RLTR16 LTR ERVK 401 498 -7 4 656 235 305 49 0 chr4 9323606 9323688 -146306432 + PB1D9 SINE Alu 27 112 -8 4 656 270 0 0 0 chr4 9324530 9324560 -146305560 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 656 432 0 0 0 chr4 9324560 9324608 -146305512 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 656 243 0 0 0 chr4 9325880 9325907 -146304213 + (T)n Simple_repeat Simple_repeat 1 27 0 4 656 459 135 0 0 chr4 9326745 9326841 -146303279 + (GA)n Simple_repeat Simple_repeat 1 96 0 4 656 381 162 5 72 chr4 9327787 9327980 -146302140 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 656 3466 23 97 2 chr4 9328332 9328766 -146301354 + IAPLTR2_Mm LTR ERVK 1 475 0 4 656 207 100 0 0 chr4 9328798 9328828 -146301292 + (TCTCC)n Simple_repeat Simple_repeat 1 30 0 4 656 27 29 0 0 chr4 9330134 9330168 -146299952 + AT_rich Low_complexity Low_complexity 1 34 0 4 656 2657 194 62 25 chr4 9330168 9330814 -146299306 - Lx9 LINE L1 -15 7629 6960 4 656 365 345 0 0 chr4 9330841 9330960 -146299160 - MER33 DNA MER1_type -205 119 1 4 656 533 276 81 27 chr4 9331315 9331501 -146298619 + B3A SINE B2 3 198 0 4 656 411 280 77 0 chr4 9331859 9332041 -146298079 - L1MB7 LINE L1 0 6184 5989 4 656 359 210 11 90 chr4 9332837 9332926 -146297194 + ID4 SINE ID 1 82 -1 4 656 180 111 0 0 chr4 9332949 9332976 -146297144 + (TCTCTG)n Simple_repeat Simple_repeat 1 27 0 4 656 2796 249 90 24 chr4 9333115 9333958 -146296162 - Lx9 LINE L1 -3 7641 6743 4 656 456 51 0 0 chr4 9334716 9334775 -146295345 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 656 423 0 0 0 chr4 9336209 9336256 -146293864 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 656 234 193 0 0 chr4 9337579 9337636 -146292484 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 656 770 293 37 41 chr4 9337660 9337930 -146292190 - B4A SINE B4 -22 270 2 4 656 1379 211 102 33 chr4 9338636 9338998 -146291122 - Lx8 LINE L1 -519 6954 6568 4 656 258 182 129 57 chr4 9339436 9339646 -146290474 - Lx9 LINE L1 -2 7642 7418 4 656 782 252 80 65 chr4 9339616 9339727 -146290393 - Lx9 LINE L1 -124 7520 7419 4 656 291 28 0 0 chr4 9339727 9339763 -146290357 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 656 782 252 80 65 chr4 9339763 9340066 -146290054 - Lx9 LINE L1 -226 7418 7100 4 656 396 211 211 0 chr4 9340062 9340176 -146289944 + Lx9 LINE L1 5389 5526 -321 4 656 3941 166 86 18 chr4 9340177 9341014 -146289106 + RMER19B LTR ERVK 1 894 -8 4 656 1082 255 118 54 chr4 9341018 9341502 -146288618 + Lx9 LINE L1 5587 6101 -1543 4 656 1730 299 25 8 chr4 9341510 9341831 -146288289 + Lx9 LINE L1 6323 6645 -999 4 656 2228 47 4 0 chr4 9341831 9342108 -146288012 - L1Md_F3 LINE L1 0 6584 6307 4 656 1730 295 112 16 chr4 9342108 9342365 -146287755 + Lx9 LINE L1 6646 6931 -713 4 656 2214 235 116 46 chr4 9342378 9343231 -146286889 + L1_Rod LINE L1 4494 5406 -441 4 656 427 225 67 0 chr4 9343252 9343341 -146286779 - PB1D10 SINE Alu -21 96 2 4 656 251 222 16 0 chr4 9345025 9345088 -146285032 - L1MD2 LINE L1 -399 5960 5897 4 656 618 219 70 8 chr4 9345098 9345227 -146284893 - B1_Mur2 SINE Alu -5 144 8 4 656 390 42 0 0 chr4 9345231 9345279 -146284841 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 656 434 253 140 6 chr4 9345292 9345471 -146284649 - L1MD2 LINE L1 -513 5846 5644 4 656 199 79 0 50 chr4 9345592 9345632 -146284488 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 656 746 343 11 22 chr4 9345726 9345997 -146284123 - B4A SINE B4 -23 269 2 4 656 451 242 27 92 chr4 9346002 9346269 -146283851 - L1MD2 LINE L1 -752 5490 5231 4 656 1681 278 109 51 chr4 9346720 9347859 -146282261 - L1MD2 LINE L1 -2297 3849 2645 4 656 283 304 11 11 chr4 9348645 9348738 -146281382 - ORR1E LTR MaLR -266 93 1 4 656 220 320 0 13 chr4 9349555 9349631 -146280489 + ID4 SINE ID 6 80 -3 4 656 252 245 0 0 chr4 9349978 9350031 -146280089 - Lx8 LINE L1 -369 7104 7052 4 656 221 0 35 0 chr4 9351801 9351830 -146278290 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 656 690 276 28 23 chr4 9351894 9352109 -146278011 - B3 SINE B2 0 216 1 4 656 206 318 46 18 chr4 9352454 9352563 -146277557 + MIRb SINE MIR 116 227 -41 4 656 322 314 0 0 chr4 9352637 9352742 -146277378 - L1MA9 LINE L1 -5 6307 6203 4 656 3112 194 99 119 chr4 9352780 9353270 -146276850 - RMER1A Other Other -118 912 408 4 656 3534 20 2 0 chr4 9353270 9353665 -146276455 - MTA_Mm LTR MaLR 0 396 1 4 656 3112 194 99 119 chr4 9353665 9353893 -146276227 - RMER1A Other Other -623 407 229 4 656 405 0 0 0 chr4 9353893 9353938 -146276182 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 656 3112 268 69 61 chr4 9353938 9354720 -146275400 - RMER1A Other Other -533 533 1 4 656 21 0 0 0 chr4 9356670 9356691 -146273429 + AT_rich Low_complexity Low_complexity 1 21 0 4 656 555 300 35 29 chr4 9358107 9358444 -146271676 - MLT1B LTR MaLR -3 464 15 4 656 1284 84 4 4 chr4 9359501 9359994 -146270126 + (TG)n Simple_repeat Simple_repeat 1 493 0 4 656 21 0 0 0 chr4 9360340 9360361 -146269759 + AT_rich Low_complexity Low_complexity 1 21 0 4 656 427 153 20 0 chr4 9361050 9361148 -146268972 + (CATA)n Simple_repeat Simple_repeat 3 102 0 4 656 396 222 0 0 chr4 9361891 9361963 -146268157 + PB1D10 SINE Alu 40 111 -6 4 656 829 110 7 7 chr4 9361966 9362103 -146268017 + (GGAGA)n Simple_repeat Simple_repeat 1 137 0 4 656 22 35 0 0 chr4 9362323 9362352 -146267768 + AT_rich Low_complexity Low_complexity 1 29 0 4 656 231 36 0 0 chr4 9362943 9362971 -146267149 + (T)n Simple_repeat Simple_repeat 1 28 0 4 656 246 347 0 0 chr4 9362971 9363046 -146267074 + PB1D10 SINE Alu 2 76 -41 4 656 1160 111 0 104 chr4 9363062 9363274 -146266846 + B2_Mm2 SINE B2 2 191 -4 4 656 218 122 24 0 chr4 9363292 9363333 -146266787 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 656 356 0 0 22 chr4 9363690 9363735 -146266385 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 656 370 209 6 178 chr4 9364709 9364866 -146265254 - RMER15 LTR ERVL -440 135 6 5 656 265 254 15 0 chr4 9364867 9364934 -146265186 + CT-rich Low_complexity Low_complexity 2 69 0 5 656 771 269 50 35 chr4 9364997 9365197 -146264923 - B4 SINE B4 -9 283 81 5 656 8237 31 1 11 chr4 9365198 9366758 -146263362 - L1Md_F2 LINE L1 -10 6572 5036 5 656 490 120 151 11 chr4 9367277 9367370 -146262750 - B1_Mur2 SINE Alu -2 147 42 5 656 2767 164 20 10 chr4 9368157 9368651 -146261469 - RMER1B Other Other -13 1053 555 5 656 989 24 61 0 chr4 9369178 9369343 -146260777 + (GA)n Simple_repeat Simple_repeat 2 176 0 5 656 252 0 0 0 chr4 9369344 9369372 -146260748 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 5 656 366 23 0 0 chr4 9370692 9370735 -146259385 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 656 478 263 35 28 chr4 9371145 9371286 -146258834 - B1F1 SINE Alu -7 142 1 5 656 187 261 0 0 chr4 9372239 9372285 -146257835 - MIR SINE MIR -91 171 126 5 656 432 97 0 0 chr4 9372429 9372491 -146257629 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 656 529 293 54 133 chr4 9372543 9372858 -146257262 - B4 SINE B4 -2 290 1 5 656 275 177 31 31 chr4 9372872 9372936 -146257184 - Lx8 LINE L1 -2 7471 7408 5 656 339 291 51 8 chr4 9375060 9375178 -146254942 + MER2B DNA MER2_type 208 330 -6 5 656 243 223 22 15 chr4 9375607 9375686 -146254434 - PB1D10 SINE Alu -51 98 17 5 656 334 247 52 0 chr4 9375749 9375846 -146254274 - B1F SINE Alu -23 126 25 5 656 233 321 132 0 chr4 9376262 9376368 -146253752 - MER77 LTR ERVL -58 549 430 5 656 198 118 0 0 chr4 9376370 9376404 -146253716 + (A)n Simple_repeat Simple_repeat 1 34 0 5 656 262 0 53 0 chr4 9377381 9377419 -146252701 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 656 358 289 25 0 chr4 9377977 9378098 -146252022 + CT-rich Low_complexity Low_complexity 1 124 0 5 656 1016 158 39 29 chr4 9380911 9381119 -146249001 - URR1A DNA MER1_type -16 210 1 5 656 250 297 99 28 chr4 9381326 9381468 -146248652 + B4 SINE B4 125 276 -16 5 656 402 112 0 96 chr4 9381637 9381824 -146248296 + (CTG)n Simple_repeat Simple_repeat 2 170 0 5 656 194 0 39 0 chr4 9382461 9382487 -146247633 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 656 3017 45 0 50 chr4 9382489 9382888 -146247232 - L1Md_F2 LINE L1 -14 6568 6190 5 656 5850 63 17 0 chr4 9382888 9383637 -146246483 + L1_Mm LINE L1 4472 5233 -650 5 656 308 299 21 0 chr4 9383639 9383736 -146246384 + MER20 DNA MER1_type 40 138 -81 5 656 23 0 0 0 chr4 9383922 9383945 -146246175 + AT_rich Low_complexity Low_complexity 1 23 0 5 656 623 287 117 3 chr4 9384504 9384794 -146245326 + L1MB3 LINE L1 5861 6183 0 5 656 493 329 41 9 chr4 9384945 9385163 -146244957 - Tigger5 DNA MER2_type -2 2404 2180 5 656 441 347 62 31 chr4 9385166 9385422 -146244698 - Tigger5 DNA MER2_type -2142 264 1 5 656 640 286 46 56 chr4 9385925 9386121 -146243999 - RMER30 DNA MER1_type -4 198 5 5 656 314 218 0 49 chr4 9386495 9386577 -146243543 + B1F SINE Alu 65 142 -7 5 656 1308 220 154 22 chr4 9388368 9388726 -146241394 + MTD LTR MaLR 1 405 -14 5 656 381 271 97 70 chr4 9389119 9389275 -146240845 - MIRb SINE MIR 0 262 110 5 656 1910 148 35 155 chr4 9389275 9389708 -146240412 + ORR1C2 LTR MaLR 1 381 -3 5 656 381 209 102 45 chr4 9389708 9389783 -146240337 - MIRb SINE MIR -152 116 26 5 656 682 231 38 6 chr4 9390988 9391145 -146238975 + URR1B DNA MER1_type 2 163 -62 5 656 32652 123 55 20 chr4 9391152 9392979 -146237141 + L1_Mus1 LINE L1 177 2070 -3813 5 656 240 35 0 0 chr4 9392979 9393008 -146237112 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 656 32652 95 8 2 chr4 9393008 9396960 -146233160 + L1_Mus1 LINE L1 2071 6050 -517 5 656 1602 88 0 14 chr4 9396955 9397174 -146232946 + L1_Mus1 LINE L1 6249 6464 -103 5 656 432 271 143 10 chr4 9397891 9398100 -146232020 + MLT1C LTR MaLR 138 374 -93 5 656 1979 134 75 9 chr4 9399432 9399764 -146230356 + ORR1B1 LTR MaLR 41 394 0 5 656 327 130 0 0 chr4 9399829 9399883 -146230237 + (CCTG)n Simple_repeat Simple_repeat 3 56 0 5 656 276 309 0 0 chr4 9400012 9400080 -146230040 + GA-rich Low_complexity Low_complexity 4 71 0 5 656 383 350 38 11 chr4 9401460 9401645 -146228475 - MIRb SINE MIR -10 258 69 5 656 328 308 58 0 chr4 9402678 9402774 -146227346 + PB1 SINE Alu 17 118 -9 5 656 309 109 0 0 chr4 9402774 9402829 -146227291 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 656 286 253 37 112 chr4 9404633 9404740 -146225380 + MTE2b LTR MaLR 25 123 -256 5 656 351 217 14 14 chr4 9404678 9404748 -146225372 + MT2B LTR ERVL 63 132 -401 5 656 1373 209 8 84 chr4 9404798 9405153 -146224967 + MT2B LTR ERVL 274 601 0 5 656 278 57 75 0 chr4 9405537 9405590 -146224530 - L1Md_F3 LINE L1 0 6584 6528 5 656 237 204 93 0 chr4 9405755 9405809 -146224311 + MER117 DNA MER1_type 1 59 -138 5 656 7387 174 67 27 chr4 9406251 9408227 -146221893 + Lx6 LINE L1 5202 7277 -183 5 656 386 331 14 0 chr4 9408314 9408459 -146221661 + Lx7 LINE L1 7189 7335 -361 5 656 198 143 0 0 chr4 9408459 9408494 -146221626 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 656 8707 24 0 0 chr4 9408513 9410035 -146220085 - L1Md_T LINE L1 0 6582 5061 5 656 5234 20 3 0 chr4 9410029 9410621 -146219499 + L1Md_T LINE L1 4467 5060 -823 5 656 28 29 0 0 chr4 9410783 9410818 -146219302 + AT_rich Low_complexity Low_complexity 1 35 0 5 656 327 150 0 0 chr4 9411194 9411254 -146218866 + (CCA)n Simple_repeat Simple_repeat 3 62 0 5 656 1870 129 39 0 chr4 9411840 9412119 -146218001 + Lx2 LINE L1 6704 6993 -4 5 656 314 108 54 0 chr4 9412257 9412331 -146217789 + GA-rich Low_complexity Low_complexity 1 78 0 5 656 629 240 131 23 chr4 9412379 9412554 -146217566 + B3 SINE B2 23 216 0 5 656 249 208 0 0 chr4 9412645 9412722 -146217398 + CT-rich Low_complexity Low_complexity 1 77 0 5 656 251 274 118 50 chr4 9413750 9413869 -146216251 + MER57D LTR ERV1 134 260 -151 5 656 1239 91 0 0 chr4 9414902 9415146 -146214974 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 656 535 327 26 0 chr4 9415167 9415320 -146214800 - RSINE1 SINE B4 -5 160 4 5 656 469 360 116 62 chr4 9415476 9415699 -146214421 + MLT2B3 LTR ERVL 5 219 -335 5 656 858 91 0 0 chr4 9415699 9415820 -146214300 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 656 469 360 116 62 chr4 9415820 9416114 -146214006 + MLT2B3 LTR ERVL 220 550 -4 5 656 36 0 0 0 chr4 9416721 9416757 -146213363 + AT_rich Low_complexity Low_complexity 1 36 0 5 656 249 344 16 8 chr4 9416980 9417103 -146213017 - MLT1A0 LTR MaLR -241 124 1 5 656 324 48 0 0 chr4 9417108 9417150 -146212970 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 5 656 184 191 149 0 chr4 9417333 9417380 -146212740 - L2a LINE L2 -293 3133 3080 5 656 242 304 174 26 chr4 9417790 9418060 -146212060 - HAL1 LINE L1 -132 2375 2066 5 656 714 331 80 11 chr4 9418897 9419270 -146210850 - L1MA9 LINE L1 -222 6090 5692 5 656 228 123 77 0 chr4 9419309 9419374 -146210746 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 656 660 268 165 16 chr4 9419378 9419924 -146210196 - L1MA9 LINE L1 -623 5677 5062 5 656 334 234 9 9 chr4 9420003 9420111 -146210009 + CT-rich Low_complexity Low_complexity 3 110 0 5 656 253 312 12 72 chr4 9420143 9420226 -146209894 + MIRc SINE MIR 66 143 -125 5 656 291 244 14 0 chr4 9420248 9420317 -146209803 + Lx8 LINE L1 6093 6159 -1314 5 656 254 327 10 19 chr4 9420429 9420532 -146209588 - MLT1B LTR MaLR -288 102 1 5 656 356 310 0 17 chr4 9420676 9420794 -146209326 + B1_Mus2 SINE Alu 2 117 0 5 656 296 330 0 104 chr4 9420688 9420813 -146209307 + MT2B LTR ERVL 178 289 -312 5 656 36401 43 0 4 chr4 9420969 9426425 -146203695 + L1Md_T LINE L1 59 5589 -297 5 656 8984 33 0 5 chr4 9426425 9427426 -146202694 + L1Md_T LINE L1 5590 6585 0 5 656 334 155 113 0 chr4 9427934 9428005 -146202115 - MER89 LTR ERV1 0 559 481 5 656 425 370 57 22 chr4 9428076 9428394 -146201726 - MER89 LTR ERV1 -217 342 14 5 656 416 35 17 0 chr4 9430298 9430356 -146199764 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 656 463 329 97 15 chr4 9431450 9431702 -146198418 + MIR SINE MIR 3 268 0 5 656 595 299 64 21 chr4 9431957 9432285 -146197835 - L1MB7 LINE L1 -71 6113 5772 5 656 541 294 33 22 chr4 9432304 9432488 -146197632 - L1MB7 LINE L1 -547 5637 5452 5 656 220 227 15 29 chr4 9432492 9432560 -146197560 + (TTTAA)n Simple_repeat Simple_repeat 5 71 0 5 656 611 342 25 5 chr4 9432588 9432788 -146197332 + MLT1A0 LTR MaLR 161 364 -1 5 656 390 117 234 0 chr4 9433999 9434076 -146196044 + B1_Mus2 SINE Alu 51 145 -2 5 656 195 100 0 0 chr4 9434083 9434113 -146196007 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 656 273 307 162 82 chr4 9434589 9435040 -146195080 + Charlie1 DNA MER1_type 6 492 -31 5 656 1386 213 117 47 chr4 9435101 9435482 -146194638 + MTD LTR MaLR 7 397 -22 5 656 465 268 104 16 chr4 9435487 9435669 -146194451 + MTD-int LTR MaLR 1 198 -1060 5 656 396 313 107 7 chr4 9436073 9436283 -146193837 - MER47B DNA MER2_type -160 258 38 5 656 1645 210 40 96 chr4 9436469 9436963 -146193157 + RLTR1B LTR ERV1 1 512 0 5 657 324 343 29 0 chr4 9437682 9437784 -146192336 - PB1D9 SINE Alu -15 105 1 5 657 22 0 0 0 chr4 9437887 9437909 -146192211 + AT_rich Low_complexity Low_complexity 1 22 0 5 657 204 125 0 0 chr4 9438369 9438401 -146191719 + (A)n Simple_repeat Simple_repeat 1 32 0 5 657 806 255 98 0 chr4 9439032 9439236 -146190884 - ID_B1 SINE B4 0 224 1 5 657 585 129 0 0 chr4 9439306 9439422 -146190698 + (CA)n Simple_repeat Simple_repeat 2 117 0 5 657 303 193 0 0 chr4 9441427 9441515 -146188605 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 657 744 271 7 0 chr4 9442565 9442716 -146187404 + RSINE1 SINE B4 4 155 -10 5 657 270 193 0 0 chr4 9442734 9442791 -146187329 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 657 283 216 59 18 chr4 9442902 9443153 -146186967 + (TTATA)n Simple_repeat Simple_repeat 1 261 0 6 657 212 170 73 21 chr4 9443102 9443198 -146186922 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 657 1302 41 0 0 chr4 9443292 9443439 -146186681 + B1_Mm SINE Alu 1 147 0 6 657 204 125 0 0 chr4 9444064 9444096 -146186024 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 6 657 453 36 0 0 chr4 9444096 9444151 -146185969 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 657 268 150 16 32 chr4 9445748 9445810 -146184310 + L1MC4a LINE L1 7822 7882 0 6 657 2795 36 63 0 chr4 9446741 9447074 -146183046 + IAPEY2_LTR LTR ERVK 1 354 -3 6 657 390 292 0 127 chr4 9447854 9447948 -146182172 + B3A SINE B2 2 85 -113 6 657 382 278 138 122 chr4 9447948 9448309 -146181811 + ORR1D2 LTR MaLR 4 370 0 6 657 390 308 19 140 chr4 9448309 9448442 -146181678 + B3A SINE B2 84 203 -13 6 657 300 111 0 0 chr4 9448884 9448938 -146181182 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 6 657 228 292 34 0 chr4 9449013 9449102 -146181018 + MER44B DNA MER2_type 23 114 -436 6 657 7134 192 45 52 chr4 9449475 9450037 -146180083 + Lx6 LINE L1 892 1396 -4481 6 657 1130 61 0 52 chr4 9450037 9450192 -146179928 + B1_Mus1 SINE Alu 2 148 0 6 657 7134 190 45 48 chr4 9450192 9450865 -146179255 + Lx6 LINE L1 1397 2059 -3818 6 657 387 0 0 0 chr4 9450865 9450908 -146179212 + (CTA)n Simple_repeat Simple_repeat 2 44 0 6 657 7134 190 45 48 chr4 9450908 9451057 -146179063 + Lx6 LINE L1 2060 2200 -3677 6 657 225 0 0 0 chr4 9451057 9451082 -146179038 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 657 7134 190 45 48 chr4 9451082 9451797 -146178323 + Lx6 LINE L1 2201 2930 -2947 6 657 2765 218 33 21 chr4 9451822 9452658 -146177462 + Lx6 LINE L1 5425 6282 -1178 6 657 1087 265 42 57 chr4 9452693 9453029 -146177091 + Lx6 LINE L1 6464 6794 -256 6 657 514 252 20 27 chr4 9453233 9453380 -146176740 + ID_B1 SINE B4 79 224 0 6 657 252 86 0 0 chr4 9453380 9453415 -146176705 + (A)n Simple_repeat Simple_repeat 1 35 0 6 657 637 155 155 0 chr4 9453810 9453939 -146176181 + B1_Mur3 SINE Alu 1 149 0 6 657 343 370 47 9 chr4 9454003 9454216 -146175904 + MER44B DNA MER2_type 83 303 -247 6 657 259 325 13 0 chr4 9454243 9454320 -146175800 + MER44B DNA MER2_type 471 548 -2 6 657 311 250 14 0 chr4 9456769 9456841 -146173279 + B1F SINE Alu 34 106 -43 6 657 369 0 0 0 chr4 9457807 9457848 -146172272 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 6 657 264 270 16 0 chr4 9458469 9458532 -146171588 - B4 SINE B4 0 292 229 6 657 740 263 92 7 chr4 9458556 9458805 -146171315 + B4 SINE B4 15 280 -12 6 657 230 338 124 64 chr4 9459769 9460300 -146169820 - L2 LINE L2 -820 2599 2037 6 657 25 51 0 0 chr4 9462459 9462498 -146167622 + AT_rich Low_complexity Low_complexity 1 39 0 6 657 180 239 43 0 chr4 9463713 9463759 -146166361 + L2b LINE L2 3309 3356 -19 6 657 329 321 36 19 chr4 9463925 9464091 -146166029 + MER74B LTR ERVL 188 402 -220 6 657 277 262 241 100 chr4 9465526 9465895 -146164225 - MLT1D LTR MaLR -82 423 3 6 657 189 0 0 0 chr4 9466989 9467010 -146163110 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 657 31 76 0 0 chr4 9467095 9467161 -146162959 + AT_rich Low_complexity Low_complexity 1 66 0 6 657 291 333 0 0 chr4 9467249 9467315 -146162805 + RSINE1 SINE B4 1 66 -99 6 657 1164 74 0 0 chr4 9467632 9467780 -146162340 + B1_Mus1 SINE Alu 1 148 0 6 657 200 35 35 0 chr4 9467780 9467809 -146162311 + (GAAAA)n Simple_repeat Simple_repeat 3 32 0 6 657 204 246 12 56 chr4 9468988 9469088 -146161032 - MIR3 SINE MIR -65 203 102 6 657 23 33 0 0 chr4 9470945 9470975 -146159145 + AT_rich Low_complexity Low_complexity 1 30 0 6 657 22 0 0 0 chr4 9471158 9471180 -146158940 + AT_rich Low_complexity Low_complexity 1 22 0 6 657 250 302 0 0 chr4 9471404 9471467 -146158653 - ID4_ SINE ID -13 70 8 6 657 300 292 41 10 chr4 9471502 9471599 -146158521 - B1F SINE Alu -48 101 2 6 657 351 144 43 246 chr4 9471908 9472046 -146158074 + B1_Mus2 SINE Alu 30 139 -8 6 657 3768 23 34 5 chr4 9472521 9472964 -146157156 - L1Md_F2 LINE L1 0 6582 6127 6 657 514 269 11 16 chr4 9473151 9473315 -146156805 + MTE2a LTR MaLR 209 379 0 6 657 275 336 46 0 chr4 9473423 9473554 -146156566 + LTR86A2 LTR ERVL 11 147 -361 6 657 666 37 0 0 chr4 9474225 9474306 -146155814 + (TCTCC)n Simple_repeat Simple_repeat 1 81 0 6 657 1451 28 0 11 chr4 9474308 9474489 -146155631 + (TCCCC)n Simple_repeat Simple_repeat 2 180 0 6 657 611 120 0 9 chr4 9474491 9474600 -146155520 + (TCCC)n Simple_repeat Simple_repeat 3 110 0 6 657 792 258 24 34 chr4 9474621 9474826 -146155294 - ID_B1 SINE B4 -21 203 1 6 657 360 248 0 121 chr4 9474836 9474960 -146155160 - PB1D10 SINE Alu 0 117 9 6 657 420 315 0 0 chr4 9475785 9475893 -146154227 + RSINE1 SINE B4 12 119 -46 6 657 398 186 12 0 chr4 9475934 9476020 -146154100 + GA-rich Low_complexity Low_complexity 2 88 0 6 657 2354 110 0 0 chr4 9476311 9476637 -146153483 + ORR1A3 LTR MaLR 1 326 0 6 657 1097 95 0 0 chr4 9476855 9477002 -146153118 + B1_Mm SINE Alu 1 147 0 6 657 1157 225 127 38 chr4 9477159 9477505 -146152615 - MTE2a LTR MaLR 0 379 3 6 657 825 283 109 21 chr4 9480642 9481118 -146149002 + L1ME1 LINE L1 3357 3874 -2272 6 657 810 291 92 53 chr4 9481187 9481750 -146148370 + L1ME1 LINE L1 5279 5863 -316 6 657 1169 69 0 0 chr4 9481766 9481926 -146148194 + B2_Mm2 SINE B2 3 162 -33 6 657 387 0 0 0 chr4 9481927 9481970 -146148150 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 657 441 0 0 0 chr4 9482437 9482486 -146147634 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 657 350 326 7 34 chr4 9484253 9484399 -146145721 - ID_B1 SINE B4 0 224 83 6 657 278 102 0 33 chr4 9486164 9486225 -146143895 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 657 376 227 0 161 chr4 9486428 9486572 -146143548 - B1F2 SINE Alu 0 120 6 6 657 661 285 80 40 chr4 9486986 9487286 -146142834 - Tigger7 DNA MER2_type -11 2480 2169 6 657 1110 104 0 23 chr4 9489471 9489775 -146140345 + (CA)n Simple_repeat Simple_repeat 1 297 0 6 657 455 87 14 0 chr4 9490131 9490200 -146139920 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 657 242 250 282 18 chr4 9490330 9490550 -146139570 + L2 LINE L2 2708 2985 -434 6 657 480 247 113 18 chr4 9491020 9491202 -146138918 + B4 SINE B4 2 193 -99 6 657 5108 76 6 3 chr4 9491202 9491873 -146138247 + L1_Mus3 LINE L1 5965 6637 -1 6 657 343 298 73 153 chr4 9491873 9491991 -146138129 + B4A SINE B4 182 278 -14 6 657 409 260 9 19 chr4 9492152 9492258 -146137862 - PB1D10 SINE Alu -1 116 12 6 657 237 202 82 12 chr4 9492641 9492726 -146137394 - Charlie18a DNA MER1_type -152 190 100 6 657 1041 270 49 116 chr4 9493435 9493841 -146136279 - MTE2b LTR MaLR 0 379 1 6 657 286 200 165 36 chr4 9494652 9494738 -146135382 + PB1D10 SINE Alu 32 125 -2 6 657 210 71 0 0 chr4 9496408 9496436 -146133684 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 657 307 260 29 20 chr4 9496898 9497000 -146133120 + B4 SINE B4 10 112 -180 6 657 423 0 0 0 chr4 9497017 9497064 -146133056 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 657 551 278 163 24 chr4 9499707 9499958 -146130162 - B4A SINE B4 -6 286 1 6 657 405 0 0 0 chr4 9501103 9501148 -146128972 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 657 332 336 7 50 chr4 9502000 9502141 -146127979 + ID_B1 SINE B4 80 214 -10 2 657 361 309 32 16 chr4 9502025 9502150 -146127970 + B1F SINE Alu 22 148 -1 3 657 468 0 0 0 chr4 9502164 9502216 -146127904 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 657 197 109 62 0 chr4 9504197 9504261 -146125859 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 657 778 229 8 17 chr4 9504545 9504743 -146125377 + B3A SINE B2 3 195 0 6 657 1265 206 154 8 chr4 9505312 9505670 -146124450 + MTD LTR MaLR 1 410 -9 7 657 377 349 42 82 chr4 9505808 9505957 -146124163 + L1ME3 LINE L1 5643 5794 -368 8 657 1934 69 11 19 chr4 9505957 9506222 -146123898 + L1_Mus3 LINE L1 6371 6633 -5 9 657 377 349 42 82 chr4 9506222 9506339 -146123781 + L1ME3 LINE L1 5795 5904 -258 8 657 207 0 0 0 chr4 9506339 9506362 -146123758 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 657 377 349 42 82 chr4 9506362 9506381 -146123739 + L1ME3 LINE L1 5905 5921 -241 8 657 270 0 0 0 chr4 9506381 9506411 -146123709 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 657 377 349 42 82 chr4 9506411 9506476 -146123644 + L1ME3 LINE L1 5922 5981 -181 8 657 233 176 0 19 chr4 9506558 9506610 -146123510 + L1ME3A LINE L1 6120 6170 -3 1 657 629 269 24 68 chr4 9506743 9506950 -146123170 + B3A SINE B2 1 198 0 1 657 23 33 0 0 chr4 9508393 9508423 -146121697 + AT_rich Low_complexity Low_complexity 1 30 0 1 657 278 206 31 16 chr4 9511642 9511706 -146118414 + RMER21A LTR ERV1 395 459 -488 1 657 397 262 103 86 chr4 9512044 9512082 -146118038 + B4 SINE B4 46 86 -206 1 657 620 162 28 1 chr4 9512082 9512220 -146117900 + B1_Mur2 SINE Alu 1 148 -1 1 657 245 29 0 29 chr4 9512223 9512258 -146117862 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 657 303 206 0 29 chr4 9512446 9512516 -146117604 + PB1D7 SINE Alu 51 118 -2 1 657 39048 17 1 9 chr4 9512613 9518855 -146111265 + L1Md_A LINE L1 1 5586 -297 2 657 9007 14 0 0 chr4 9518855 9519851 -146110269 + L1Md_A LINE L1 5587 6582 0 2 657 632 287 22 16 chr4 9519864 9520048 -146110072 + B3 SINE B2 27 211 -5 2 657 907 139 28 0 chr4 9521613 9521757 -146108363 + B1_Mur3 SINE Alu 1 148 -1 2 657 817 228 111 0 chr4 9521902 9522091 -146108029 - URR1B DNA MER1_type 0 225 16 2 657 300 254 0 0 chr4 9522093 9522156 -146107964 - URR1B DNA MER1_type -162 63 1 2 657 22 35 0 0 chr4 9522309 9522338 -146107782 + AT_rich Low_complexity Low_complexity 1 29 0 2 657 295 326 0 11 chr4 9522356 9522449 -146107671 + MER2 DNA MER2_type 242 333 -12 2 657 185 285 121 46 chr4 9525123 9525296 -146104824 + L3 LINE CR1 2270 2455 -2034 2 657 292 271 0 0 chr4 9525451 9525558 -146104562 + A-rich Low_complexity Low_complexity 1 107 0 2 657 579 321 58 5 chr4 9526508 9526804 -146103316 + L1MA4 LINE L1 5620 5935 -365 2 657 245 318 0 0 chr4 9526811 9526874 -146103246 + GA-rich Low_complexity Low_complexity 3 65 0 2 657 3884 73 4 4 chr4 9527345 9527856 -146102264 - L1Md_F2 LINE L1 -1 6581 6071 3 657 4264 30 0 0 chr4 9527856 9528347 -146101773 + L1Md_T LINE L1 5597 6087 -495 3 657 470 244 8 70 chr4 9528893 9529021 -146101099 - PB1D7 SINE Alu 0 120 1 3 657 504 0 0 0 chr4 9529063 9529119 -146101001 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 657 1160 48 14 7 chr4 9529205 9529351 -146100769 + B1_Mus1 SINE Alu 1 147 -1 3 657 204 0 83 0 chr4 9529353 9529389 -146100731 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 657 21 36 0 0 chr4 9529520 9529548 -146100572 + AT_rich Low_complexity Low_complexity 1 28 0 3 657 707 212 7 0 chr4 9530163 9530300 -146099820 - B1_Mur1 SINE Alu -8 141 4 3 657 248 305 12 35 chr4 9531180 9531265 -146098855 + MER58A DNA MER1_type 52 134 -90 3 657 23 0 0 0 chr4 9532247 9532270 -146097850 + AT_rich Low_complexity Low_complexity 1 23 0 3 657 221 304 71 9 chr4 9532387 9532500 -146097620 + MIR SINE MIR 76 195 -67 4 657 792 325 90 9 chr4 9532697 9533042 -146097078 + Tigger7 DNA MER2_type 2 374 -2117 4 657 21 36 0 0 chr4 9533055 9533083 -146097037 + AT_rich Low_complexity Low_complexity 1 28 0 4 657 201 234 0 0 chr4 9533097 9533161 -146096959 + GA-rich Low_complexity Low_complexity 2 65 0 4 657 226 318 0 0 chr4 9533195 9533261 -146096859 + Tigger7 DNA MER2_type 509 574 -1917 4 657 21 36 0 0 chr4 9534766 9534794 -146095326 + AT_rich Low_complexity Low_complexity 1 28 0 4 657 249 33 0 0 chr4 9535038 9535068 -146095052 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 657 1506 58 16 21 chr4 9535315 9535508 -146094612 + B2_Mm2 SINE B2 1 192 -3 4 657 21 57 0 0 chr4 9537072 9537107 -146093013 + AT_rich Low_complexity Low_complexity 1 35 0 4 657 699 160 34 20 chr4 9538611 9538758 -146091362 + B1_Mur3 SINE Alu 1 149 0 4 657 22 0 0 0 chr4 9540245 9540267 -146089853 + AT_rich Low_complexity Low_complexity 1 22 0 4 657 462 134 0 0 chr4 9540852 9540888 -146089232 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 657 423 0 0 0 chr4 9540888 9540935 -146089185 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 657 462 134 0 0 chr4 9540935 9540995 -146089125 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 657 455 311 40 0 chr4 9541988 9542165 -146087955 - MER2 DNA MER2_type -5 340 157 5 657 302 320 72 33 chr4 9543705 9543857 -146086263 + ID_B1 SINE B4 65 222 -2 5 657 356 233 104 37 chr4 9543728 9543862 -146086258 + B1F1 SINE Alu 7 149 0 5 657 587 182 0 8 chr4 9547364 9547486 -146082634 + GA-rich Low_complexity Low_complexity 2 122 0 5 657 459 0 0 0 chr4 9547657 9547708 -146082412 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 657 231 125 0 0 chr4 9547743 9547783 -146082337 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 657 351 0 0 0 chr4 9547783 9547822 -146082298 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 657 409 244 8 32 chr4 9547838 9547961 -146082159 - ID_B1 SINE B4 -13 211 92 6 657 219 253 46 46 chr4 9547884 9547971 -146082149 - PB1D9 SINE Alu -29 91 5 6 657 21 36 0 0 chr4 9550655 9550683 -146079437 + AT_rich Low_complexity Low_complexity 1 28 0 6 657 26 30 0 0 chr4 9553216 9553249 -146076871 + AT_rich Low_complexity Low_complexity 1 33 0 6 657 207 300 11 32 chr4 9559514 9559607 -146070513 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 657 298 175 50 106 chr4 9560253 9560394 -146069726 - Lx9 LINE L1 -1 7643 7511 6 657 683 53 0 34 chr4 9560707 9560824 -146069296 + (TCTCC)n Simple_repeat Simple_repeat 1 113 0 6 657 266 326 0 43 chr4 9561764 9561857 -146068263 + 5S rRNA rRNA 2 90 -31 6 657 2912 179 79 17 chr4 9562158 9562934 -146067186 + Lx4B LINE L1 6120 7057 -1 6 657 2036 149 23 6 chr4 9563945 9564295 -146065825 + RLTR15 LTR ERVK 4 359 0 6 657 225 234 149 0 chr4 9565417 9565511 -146064609 + L1MB7 LINE L1 6052 6159 -25 7 657 610 214 128 13 chr4 9565573 9565729 -146064391 + B3A SINE B2 3 176 -22 7 657 447 318 9 0 chr4 9565916 9566026 -146064094 + PB1D7 SINE Alu 1 111 -9 7 658 647 216 192 6 chr4 9568318 9568495 -146061625 - B3 SINE B2 -6 210 1 7 658 27 87 0 0 chr4 9568672 9568741 -146061379 + AT_rich Low_complexity Low_complexity 1 69 0 7 658 400 281 128 6 chr4 9568921 9569093 -146061027 + B3A SINE B2 6 198 0 7 658 27 49 0 0 chr4 9570132 9570173 -146059947 + AT_rich Low_complexity Low_complexity 1 41 0 7 658 21 0 0 0 chr4 9571872 9571893 -146058227 + AT_rich Low_complexity Low_complexity 1 21 0 7 658 2012 175 48 15 chr4 9572421 9572821 -146057299 + MTC LTR MaLR 1 413 -8 7 658 234 260 0 0 chr4 9574405 9574478 -146055642 + C-rich Low_complexity Low_complexity 2 74 0 7 658 252 86 0 0 chr4 9575246 9575281 -146054839 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 658 668 257 16 47 chr4 9575281 9575473 -146054647 - B3 SINE B2 -16 200 15 8 658 207 88 0 0 chr4 9576758 9576792 -146053328 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 658 198 143 0 0 chr4 9577185 9577220 -146052900 + (A)n Simple_repeat Simple_repeat 1 35 0 8 658 772 147 327 0 chr4 9577288 9577444 -146052676 + B3 SINE B2 1 207 -9 8 658 905 53 0 15 chr4 9577445 9577578 -146052542 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 8 658 22 0 0 0 chr4 9577748 9577770 -146052350 + AT_rich Low_complexity Low_complexity 1 22 0 8 658 31 26 0 0 chr4 9577872 9577910 -146052210 + AT_rich Low_complexity Low_complexity 1 38 0 8 658 2802 72 54 15 chr4 9577965 9578357 -146051763 - MTB_Mm LTR MaLR 0 407 1 8 658 276 301 36 0 chr4 9578404 9578487 -146051633 + B4A SINE B4 1 86 -206 8 658 573 134 299 0 chr4 9578646 9578772 -146051348 + URR1A DNA MER1_type 2 165 -61 9 658 1948 133 82 3 chr4 9578772 9579112 -146051008 + ORR1B1 LTR MaLR 1 367 -27 9 658 460 46 0 0 chr4 9579130 9579195 -146050925 + URR1A DNA MER1_type 161 225 -1 9 658 237 357 21 21 chr4 9579373 9579516 -146050604 + MER77 LTR ERVL 459 601 -6 9 658 231 36 0 0 chr4 9579715 9579743 -146050377 + (A)n Simple_repeat Simple_repeat 1 28 0 9 658 275 259 54 36 chr4 9580914 9581026 -146049094 - L1ME2z LINE L1 -281 6163 6050 9 658 527 290 45 17 chr4 9581380 9581559 -146048561 + MER2 DNA MER2_type 5 188 -157 9 658 1244 140 91 13 chr4 9581559 9581791 -146048329 + MTC LTR MaLR 172 421 0 9 658 298 263 175 0 chr4 9581791 9581928 -146048192 + MER2 DNA MER2_type 184 344 -1 9 658 342 331 113 27 chr4 9581958 9582250 -146047870 - L1ME2z LINE L1 -808 5636 5320 9 658 723 168 67 0 chr4 9583490 9583639 -146046481 - URR1A DNA MER1_type -3 223 65 9 658 204 125 0 0 chr4 9584733 9584765 -146045355 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 658 396 0 0 0 chr4 9585036 9585080 -146045040 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 658 1677 207 67 25 chr4 9585779 9586181 -146043939 + MTD LTR MaLR 1 419 0 1 658 1907 199 16 5 chr4 9586315 9586689 -146043431 + ORR1C1 LTR MaLR 1 378 0 1 658 480 278 167 75 chr4 9586742 9587317 -146042803 + L1ME2z LINE L1 5612 6239 -205 1 658 302 247 22 33 chr4 9587422 9587514 -146042606 + B3 SINE B2 126 216 0 1 658 221 57 0 28 chr4 9587675 9587711 -146042409 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 658 675 167 80 36 chr4 9587719 9587856 -146042264 + B1_Mus1 SINE Alu 1 143 -5 1 658 333 0 0 0 chr4 9587860 9587897 -146042223 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 658 24 32 0 0 chr4 9587942 9587973 -146042147 + AT_rich Low_complexity Low_complexity 1 31 0 1 658 285 183 17 0 chr4 9587982 9588042 -146042078 + L1M5 LINE L1 4533 4593 -1553 1 658 713 235 6 0 chr4 9589272 9589442 -146040678 + B3A SINE B2 27 197 -1 1 658 1125 196 14 38 chr4 9589462 9589674 -146040446 + B3 SINE B2 2 208 -8 1 658 23 68 0 0 chr4 9589707 9589751 -146040369 + AT_rich Low_complexity Low_complexity 1 44 0 1 658 1147 95 0 0 chr4 9590075 9590223 -146039897 + B1_Mus1 SINE Alu 1 148 0 1 658 276 149 0 0 chr4 9590223 9590270 -146039850 + (A)n Simple_repeat Simple_repeat 1 47 0 1 658 301 279 140 0 chr4 9591418 9591640 -146038480 - L1MA5 LINE L1 -5 6295 6043 1 658 226 205 0 67 chr4 9595943 9596032 -146034088 + (CTG)n Simple_repeat Simple_repeat 3 85 0 1 658 2884 78 5 34 chr4 9597587 9597999 -146032121 + MTB LTR MaLR 1 400 0 1 658 523 292 109 60 chr4 9598006 9598290 -146031830 + ORR1E LTR MaLR 56 353 -6 1 658 1623 22 22 0 chr4 9599025 9599209 -146030911 + B2_Mm1a SINE B2 2 189 -4 1 658 857 154 17 23 chr4 9599422 9599595 -146030525 + B2_Mm2 SINE B2 2 173 -22 1 658 925 252 102 21 chr4 9599648 9599980 -146030140 - Lx8 LINE L1 -327 7146 6788 1 658 783 75 0 0 chr4 9600420 9600527 -146029593 + (TC)n Simple_repeat Simple_repeat 2 108 0 1 658 201 167 0 27 chr4 9600527 9600564 -146029556 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 658 243 0 0 0 chr4 9604028 9604055 -146026065 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 658 4326 128 7 2 chr4 9605486 9606270 -146023850 - Lx4A LINE L1 -811 6247 5452 1 658 2703 136 46 6 chr4 9606266 9607069 -146023051 + Lx4A LINE L1 6142 7056 -2 1 658 1208 193 97 0 chr4 9607099 9607337 -146022783 + Lx7 LINE L1 7118 7378 -318 1 658 411 162 0 0 chr4 9607377 9607457 -146022663 + CT-rich Low_complexity Low_complexity 2 81 0 1 658 290 262 23 45 chr4 9607762 9607850 -146022270 - ORR1E LTR MaLR -10 349 264 1 658 762 221 60 24 chr4 9607852 9608019 -146022101 + ORR1D1 LTR MaLR 3 175 -199 1 658 339 192 0 0 chr4 9608021 9608094 -146022026 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 658 451 141 0 21 chr4 9608089 9608183 -146021937 + CT-rich Low_complexity Low_complexity 1 92 0 1 658 1026 183 20 20 chr4 9608183 9608384 -146021736 + ORR1D1 LTR MaLR 166 366 -8 1 658 1011 266 11 15 chr4 9608374 9608665 -146021455 - ORR1E LTR MaLR -87 283 4 1 658 1219 54 0 0 chr4 9608726 9608873 -146021247 + B1_Mm SINE Alu 1 147 0 1 658 216 0 0 0 chr4 9608873 9608897 -146021223 + (A)n Simple_repeat Simple_repeat 1 24 0 1 658 311 256 45 34 chr4 9609977 9610066 -146020054 - MTEb LTR MaLR -15 364 275 1 658 21 36 0 0 chr4 9610710 9610738 -146019382 + AT_rich Low_complexity Low_complexity 1 28 0 1 658 972 207 174 13 chr4 9611724 9612074 -146018046 - MTC LTR MaLR -14 407 2 1 658 227 221 209 22 chr4 9613784 9613918 -146016202 + L1M5 LINE L1 2131 2289 -3857 1 658 2260 161 47 27 chr4 9614155 9614564 -146015556 - MTC LTR MaLR -3 418 2 1 658 4056 70 2 10 chr4 9614564 9615085 -146015035 + L1_Mus1 LINE L1 6051 6567 0 1 658 280 295 48 0 chr4 9615254 9615359 -146014761 + PB1D7 SINE Alu 6 115 -5 1 658 1042 284 112 11 chr4 9615545 9615990 -146014130 - L1MC3 LINE L1 -155 7630 7141 1 658 547 252 28 7 chr4 9616110 9616254 -146013866 + RSINE1 SINE B4 3 149 -16 1 658 405 0 0 0 chr4 9616254 9616299 -146013821 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 658 377 312 31 25 chr4 9616983 9617144 -146012976 - RSINE1 SINE B4 0 165 4 1 658 528 237 139 59 chr4 9617672 9617910 -146012210 - MER2 DNA MER2_type 0 345 89 1 658 3851 230 71 68 chr4 9618073 9619365 -146010755 + RMER1A Other Other 19 1018 -12 1 658 216 0 0 0 chr4 9619378 9619402 -146010718 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 658 627 14 0 0 chr4 9619894 9619966 -146010154 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 658 216 171 0 0 chr4 9619967 9620002 -146010118 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 658 821 258 91 15 chr4 9620055 9620319 -146009801 - B4 SINE B4 -6 286 3 1 658 228 67 0 0 chr4 9621253 9621283 -146008837 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 658 971 300 164 23 chr4 9621540 9622022 -146008098 - L1MB1 LINE L1 -253 5936 5308 1 658 324 0 0 0 chr4 9622022 9622058 -146008062 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 658 971 299 170 23 chr4 9622058 9622598 -146007522 - L1MB1 LINE L1 -573 5307 4730 1 658 348 312 0 21 chr4 9622622 9622717 -146007403 - B4A SINE B4 -136 156 64 1 658 743 213 19 25 chr4 9622790 9622949 -146007171 - U1 snRNA snRNA -2 163 6 1 658 344 222 75 2 chr4 9622950 9623067 -146007053 - L1_Rod LINE L1 -2168 3972 3825 1 658 546 16 0 0 chr4 9623340 9623403 -146006717 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 658 219 276 38 44 chr4 9623508 9623645 -146006475 + B1F SINE Alu 8 148 -1 1 658 282 277 0 0 chr4 9623649 9623714 -146006406 + ID4_ SINE ID 2 66 -17 1 658 1278 219 169 9 chr4 9623725 9623863 -146006257 + ORR1C2 LTR MaLR 1 169 -215 1 658 261 0 0 0 chr4 9623863 9623892 -146006228 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 658 1278 219 169 9 chr4 9623892 9624084 -146006036 + ORR1C2 LTR MaLR 170 383 -1 1 658 1091 204 15 0 chr4 9624091 9624351 -146005769 + ORR1C2-int LTR MaLR 8 271 -1099 1 658 2421 123 28 30 chr4 9624376 9624802 -146005318 - RLTR33 LTR ERVK -253 425 1 1 658 293 274 137 0 chr4 9624958 9625053 -146005067 - L1_Mur1 LINE L1 -300 5586 5479 1 658 24 32 0 0 chr4 9625207 9625238 -146004882 + AT_rich Low_complexity Low_complexity 1 31 0 1 658 7878 62 18 0 chr4 9625285 9626685 -146003435 - L1_Mus1 LINE L1 0 6654 5157 1 658 1755 69 4 4 chr4 9626808 9627041 -146003079 - L1_Mus2 LINE L1 -17 6549 6317 1 658 290 250 163 22 chr4 9627074 9627209 -146002911 + RLTR40 LTR ERVK 127 280 -537 1 658 453 19 0 0 chr4 9627212 9627266 -146002854 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 658 2013 257 59 44 chr4 9627428 9627629 -146002491 - L1_Mur3 LINE L1 -697 5459 5241 1 658 1177 62 0 14 chr4 9627629 9627777 -146002343 - B1_Mus2 SINE Alu 0 147 2 1 658 2013 315 68 102 chr4 9627777 9628687 -146001433 - L1_Mur3 LINE L1 -640 5240 4277 1 658 420 20 0 0 chr4 9628687 9628736 -146001384 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 658 478 288 56 0 chr4 9628736 9628861 -146001259 - B3A SINE B2 -60 138 7 1 658 2013 315 68 102 chr4 9628861 9629778 -146000342 - L1_Mur3 LINE L1 -1604 4276 3344 1 658 420 20 0 0 chr4 9629783 9629832 -146000288 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 658 1309 300 41 40 chr4 9629910 9630684 -145999436 + L1M2 LINE L1 2525 3299 -2844 1 658 1260 234 92 17 chr4 9630910 9631052 -145999068 + ORR1D1 LTR MaLR 1 141 -233 1 658 189 74 0 0 chr4 9631052 9631079 -145999041 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 658 1260 234 92 17 chr4 9631079 9631284 -145998836 + ORR1D1 LTR MaLR 142 374 0 1 658 302 338 22 44 chr4 9631322 9631458 -145998662 + ID_B1 SINE B4 87 219 -5 1 658 315 333 24 0 chr4 9631339 9631462 -145998658 + B1F SINE Alu 23 148 -1 1 658 261 0 0 0 chr4 9631531 9631560 -145998560 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 658 240 121 0 65 chr4 9632410 9632472 -145997648 + CT-rich Low_complexity Low_complexity 3 60 0 1 658 268 266 76 14 chr4 9632960 9633105 -145997015 - MIRb SINE MIR -64 204 51 1 658 189 0 0 0 chr4 9635545 9635566 -145994554 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 658 2499 147 18 223 chr4 9636352 9636523 -145993597 - L1_Mur3 LINE L1 -2313 3567 3399 1 658 2475 117 8 0 chr4 9636523 9636891 -145993229 + Lx2 LINE L1 6623 6993 -4 1 658 2499 147 18 223 chr4 9636891 9637562 -145992558 - L1_Mur3 LINE L1 -2482 3398 2898 1 658 3147 50 25 10 chr4 9637562 9637967 -145992153 + RLTR10A LTR ERVK 1 411 0 1 658 2397 82 3 19 chr4 9637967 9638345 -145991775 + IAP-d-int LTR ERVK 55 606 -1381 1 658 801 204 0 0 chr4 9638339 9638496 -145991624 + IAP-d-int LTR ERVK 347 503 -6039 1 658 3761 48 84 12 chr4 9638496 9638982 -145991138 + IAP-d-int LTR ERVK 5007 5527 -1015 1 658 1601 92 5 5 chr4 9638986 9639204 -145990916 + IAP-d-int LTR ERVK 5667 5884 -658 1 658 5198 70 19 14 chr4 9639205 9639901 -145990219 + RLTR10-int LTR ERVK 1288 1986 -1 1 658 3138 60 25 0 chr4 9639901 9640302 -145989818 + RLTR10A LTR ERVK 1 411 0 1 658 559 65 141 0 chr4 9640302 9640394 -145989726 - L1_Mur3 LINE L1 -2977 2903 2799 1 658 5295 195 77 6 chr4 9640390 9641479 -145988641 - L1_Mur3 LINE L1 -6504 1224 58 1 658 23 0 0 0 chr4 9641664 9641687 -145988433 + AT_rich Low_complexity Low_complexity 1 23 0 1 658 25 51 0 0 chr4 9641838 9641877 -145988243 + AT_rich Low_complexity Low_complexity 1 39 0 1 658 30 0 0 0 chr4 9642410 9642440 -145987680 + AT_rich Low_complexity Low_complexity 1 30 0 1 658 1124 188 18 0 chr4 9642580 9642798 -145987322 - Lx2 LINE L1 0 6997 6776 1 658 876 292 53 30 chr4 9643435 9643774 -145986346 + MLT1A0 LTR MaLR 11 357 -8 1 658 39800 34 0 0 chr4 9644359 9649772 -145980348 - L1Md_T LINE L1 0 6582 1170 1 658 5780 170 21 27 chr4 9649778 9651160 -145978960 - L1Md_T LINE L1 -5411 1205 99 1 658 1563 156 343 14 chr4 9651490 9651985 -145978135 + Lx2B LINE L1 1562 2219 -3658 1 658 2514 111 18 0 chr4 9651985 9652380 -145977740 + RLTR9D LTR ERVK 2 403 0 1 658 13731 162 44 8 chr4 9652380 9652800 -145977320 + Lx2B LINE L1 2213 2647 -3230 1 658 656 35 23 0 chr4 9652800 9652886 -145977234 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 1 658 13731 162 44 8 chr4 9652886 9654780 -145975340 + Lx2B LINE L1 2648 4623 -1254 1 658 186 43 0 0 chr4 9654780 9654803 -145975317 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 658 13731 162 44 8 chr4 9654803 9655109 -145975011 + Lx2B LINE L1 4624 4927 -950 1 658 3645 46 5 2 chr4 9655109 9655544 -145974576 + RLTR10C LTR ERVK 1 436 0 1 658 2895 50 0 0 chr4 9655544 9655887 -145974233 + MMERVK10C-int LTR ERVK 1 343 -7238 1 658 886 152 4 180 chr4 9655885 9656157 -145973963 + MMERVK10C-int LTR ERVK 729 952 -6629 1 658 650 222 202 48 chr4 9656247 9656631 -145973489 + MMERVK10C-int LTR ERVK 314 690 -5447 1 658 294 193 0 0 chr4 9656616 9656673 -145973447 + MMERVK10C-int LTR ERVK 1089 1145 -4261 1 658 46372 12 1 1 chr4 9656678 9661777 -145968343 + MMERVK10C-int LTR ERVK 1885 7581 0 1 658 3645 46 5 2 chr4 9661777 9662212 -145967908 + RLTR10C LTR ERVK 1 436 0 1 658 5563 185 35 45 chr4 9662212 9664099 -145966021 + Lx2B LINE L1 4923 6769 -204 1 658 321 217 0 0 chr4 9665058 9665127 -145964993 - ORR1B2 LTR MaLR -283 84 16 2 658 207 0 0 0 chr4 9665156 9665179 -145964941 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 658 1216 263 57 65 chr4 9665779 9666284 -145963836 - RLTR20B3 LTR ERVK -56 521 21 2 658 933 112 50 50 chr4 9667066 9667223 -145962897 - RLTR28B LTR ERVL -31 450 299 2 658 5998 76 0 8 chr4 9667223 9668015 -145962105 - L1_Mus1 LINE L1 -1 6566 5781 2 658 933 112 50 50 chr4 9668015 9668036 -145962084 - RLTR28B LTR ERVL -183 298 272 2 658 260 371 41 23 chr4 9668354 9668572 -145961548 + MIR SINE MIR 17 238 -24 2 658 303 85 0 0 chr4 9669143 9669190 -145960930 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 2 658 357 86 0 0 chr4 9669298 9669356 -145960764 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 658 203 256 0 0 chr4 9669464 9669507 -145960613 + CT-rich Low_complexity Low_complexity 1 43 0 2 658 21 89 0 0 chr4 9669657 9669713 -145960407 + AT_rich Low_complexity Low_complexity 1 56 0 2 658 237 353 0 0 chr4 9669778 9669863 -145960257 - ID_B1 SINE B4 -9 215 131 2 658 294 325 18 0 chr4 9669919 9670033 -145960087 - ID_B1 SINE B4 -30 194 79 2 658 376 221 23 11 chr4 9670060 9670147 -145959973 + RSINE1 SINE B4 9 96 -69 2 658 180 0 0 0 chr4 9670163 9670183 -145959937 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 658 27 0 0 0 chr4 9670883 9670910 -145959210 + AT_rich Low_complexity Low_complexity 1 27 0 2 658 1438 261 123 2 chr4 9670910 9671269 -145958851 - Lx8 LINE L1 -5 7468 7069 2 658 414 0 0 0 chr4 9671269 9671315 -145958805 + (TCCTG)n Simple_repeat Simple_repeat 1 46 0 2 658 1438 261 123 2 chr4 9671315 9671442 -145958678 - Lx8 LINE L1 -405 7068 6925 2 658 24 0 0 0 chr4 9671474 9671498 -145958622 + AT_rich Low_complexity Low_complexity 1 24 0 2 658 331 330 116 0 chr4 9671504 9671677 -145958443 + L1MA5 LINE L1 5848 6040 -260 2 658 887 267 0 0 chr4 9671798 9672000 -145958120 - B3 SINE B2 -11 205 4 2 658 1051 245 57 0 chr4 9672015 9672346 -145957774 - RCHARR1 DNA MER1_type -135 839 490 2 658 256 277 16 13 chr4 9673147 9673222 -145956898 - ID4_ SINE ID -2 81 6 2 658 347 283 106 0 chr4 9673236 9673349 -145956771 - PB1D10 SINE Alu -2 125 1 2 658 917 287 77 82 chr4 9673357 9673990 -145956130 - L1MB5 LINE L1 -2 6172 5543 2 658 417 312 17 23 chr4 9674018 9674195 -145955925 - L1MB5 LINE L1 -705 5473 5298 2 658 279 0 0 0 chr4 9674235 9674266 -145955854 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 658 1175 48 0 7 chr4 9674266 9674405 -145955715 - B1_Mm SINE Alu -8 139 2 2 658 365 315 254 19 chr4 9674469 9674849 -145955271 + MLT1D LTR MaLR 32 500 -5 2 658 204 40 0 0 chr4 9675656 9675681 -145954439 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 658 21 57 0 0 chr4 9675766 9675801 -145954319 + AT_rich Low_complexity Low_complexity 1 35 0 2 658 486 246 155 0 chr4 9676666 9676808 -145953312 - B3A SINE B2 -34 164 1 2 658 289 270 115 26 chr4 9676882 9677038 -145953082 - ORR1D2 LTR MaLR -23 356 187 2 658 2043 116 75 104 chr4 9677649 9678064 -145952056 + RLTR9D LTR ERVK 1 403 0 2 658 434 230 111 40 chr4 9678136 9678335 -145951785 - L1M2 LINE L1 -749 5394 5182 2 658 828 145 32 13 chr4 9678519 9678673 -145951447 + Lx4A LINE L1 6902 7058 0 2 658 236 200 43 0 chr4 9678674 9678744 -145951376 + (TTAAA)n Simple_repeat Simple_repeat 3 75 0 2 658 847 199 103 39 chr4 9678775 9679128 -145950992 + ORR1C2 LTR MaLR 153 384 0 2 658 315 0 0 0 chr4 9679134 9679169 -145950951 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 2 658 447 19 0 0 chr4 9679169 9679220 -145950900 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 658 1184 33 0 48 chr4 9679240 9679429 -145950691 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 658 854 234 12 99 chr4 9679475 9679717 -145950403 - ORR1D2 LTR MaLR -149 221 1 2 658 489 232 9 9 chr4 9679717 9679828 -145950292 - B3A SINE B2 -76 122 12 2 658 437 344 0 0 chr4 9680067 9680195 -145949925 - B1F2 SINE Alu -21 128 1 2 658 630 292 75 14 chr4 9680304 9680585 -145949535 - L1MB5 LINE L1 -274 5900 5603 2 658 279 233 187 0 chr4 9680702 9680852 -145949268 - L1MB5 LINE L1 -784 5362 5185 2 658 480 268 64 119 chr4 9680828 9681171 -145948949 - L1MB5 LINE L1 -3673 2473 2150 2 658 376 191 71 0 chr4 9681499 9681583 -145948537 - ORR1C1 LTR MaLR 0 378 289 2 658 27 73 0 0 chr4 9682014 9682069 -145948051 + AT_rich Low_complexity Low_complexity 1 55 0 2 658 718 299 5 0 chr4 9682888 9683072 -145947048 - B3A SINE B2 -11 187 3 2 658 203 0 37 0 chr4 9683366 9683393 -145946727 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 658 5461 182 70 21 chr4 9684703 9685303 -145944817 + Lx7 LINE L1 5332 5963 -1733 2 658 1198 181 18 13 chr4 9685303 9685527 -145944593 - URR1B DNA MER1_type 0 225 1 2 658 5461 240 39 16 chr4 9685527 9686101 -145944019 + Lx7 LINE L1 5964 6565 -1131 2 658 5917 117 69 2 chr4 9686101 9686999 -145943121 - RMER17B LTR ERVK 0 958 1 2 658 5461 240 39 16 chr4 9686999 9687388 -145942732 + Lx7 LINE L1 6566 6952 -744 2 658 764 272 74 0 chr4 9687709 9687911 -145942209 + ID_B1 SINE B4 2 218 -6 2 658 4689 92 20 13 chr4 9688762 9689584 -145940536 + RLTR13D2 LTR ERVK 1 1023 0 2 658 462 189 137 16 chr4 9690997 9691121 -145938999 + MT2A LTR ERVL 1 139 -394 2 658 307 171 86 0 chr4 9691166 9691236 -145938884 + MT2A LTR ERVL 123 198 -335 2 658 2191 218 16 2 chr4 9691236 9691659 -145938461 + Lx5 LINE L1 6619 7047 -3 2 658 11470 158 111 5 chr4 9691670 9693895 -145936225 + MERVL_2A-int LTR ERVL 628 3088 -2673 2 658 4575 191 15 14 chr4 9693897 9694817 -145935303 + MERVL_2A-int LTR ERVL 4742 5690 -71 2 658 1049 197 157 150 chr4 9694819 9694927 -145935193 + MT2A LTR ERVL 1 90 -443 2 658 3592 18 0 0 chr4 9694927 9695323 -145934797 - MTA_Mm LTR MaLR 0 396 1 2 658 1049 197 156 149 chr4 9695323 9695678 -145934442 + MT2A LTR ERVL 91 563 -38 2 658 500 111 12 0 chr4 9695678 9695759 -145934361 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 658 1030 214 67 70 chr4 9695759 9695796 -145934324 + MT2A LTR ERVL 564 601 0 2 658 384 231 114 55 chr4 9696525 9696745 -145933375 - RLTR15 LTR ERVK -14 345 113 2 658 450 0 0 0 chr4 9696745 9696795 -145933325 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 658 291 273 16 91 chr4 9697095 9697216 -145932904 - PB1 SINE Alu 0 127 16 2 658 550 250 40 0 chr4 9697359 9697511 -145932609 + MER2 DNA MER2_type 103 260 -85 2 658 189 0 0 0 chr4 9698431 9698452 -145931668 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 658 218 263 25 62 chr4 9698685 9698766 -145931354 + MIR SINE MIR 184 261 -1 2 658 521 279 72 29 chr4 9698846 9699053 -145931067 - ID_B1 SINE B4 -7 217 2 2 658 570 159 0 0 chr4 9699189 9699296 -145930824 + GA-rich Low_complexity Low_complexity 4 110 0 2 82 480 271 33 17 chr4 9699310 9699418 -145930702 + B4 SINE B4 103 214 -78 2 659 315 0 0 0 chr4 9699418 9699453 -145930667 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 659 480 271 33 17 chr4 9699453 9699464 -145930656 + B4 SINE B4 215 223 -69 2 659 201 74 0 0 chr4 9699750 9699777 -145930343 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2 659 254 328 0 0 chr4 9699802 9699869 -145930251 - PB1D10 SINE Alu -42 75 9 2 659 2812 113 39 16 chr4 9699958 9700399 -145929721 + L1_Mus4 LINE L1 6186 6636 0 2 659 2380 153 111 7 chr4 9700426 9700867 -145929253 - RMER1B Other Other 0 1066 580 2 659 24 53 0 0 chr4 9701068 9701106 -145929014 + AT_rich Low_complexity Low_complexity 1 38 0 2 659 21 0 0 0 chr4 9701133 9701154 -145928966 + AT_rich Low_complexity Low_complexity 1 21 0 2 659 2082 99 137 0 chr4 9701976 9702369 -145927751 + RLTR44E LTR ERVK 1 447 -5 2 659 324 277 92 28 chr4 9702370 9702511 -145927609 - RSINE1 SINE B4 -14 151 2 2 659 256 300 0 0 chr4 9702871 9702956 -145927164 + (CACG)n Simple_repeat Simple_repeat 1 85 0 2 659 333 248 13 147 chr4 9702965 9703121 -145926999 + B1F2 SINE Alu 15 149 0 2 659 389 178 299 0 chr4 9704700 9704807 -145925313 + B1_Mur2 SINE Alu 1 139 -10 2 659 210 250 14 14 chr4 9705067 9705136 -145924984 + B4A SINE B4 72 140 -152 2 659 335 283 10 39 chr4 9705086 9705189 -145924931 + PB1D10 SINE Alu 5 104 -13 2 659 297 0 0 0 chr4 9705189 9705222 -145924898 + (T)n Simple_repeat Simple_repeat 1 33 0 2 659 180 0 0 0 chr4 9705367 9705387 -145924733 + (A)n Simple_repeat Simple_repeat 1 20 0 2 659 627 225 226 23 chr4 9705519 9705696 -145924424 - B3 SINE B2 -3 213 1 2 659 459 245 56 21 chr4 9705933 9706075 -145924045 - B1_Mur1 SINE Alu -1 148 2 2 659 329 283 38 50 chr4 9705937 9706097 -145924023 - ID_B1 SINE B4 -2 222 65 2 659 595 208 137 14 chr4 9707955 9708101 -145922019 + RSINE1 SINE B4 2 165 0 2 659 180 0 0 0 chr4 9708101 9708121 -145921999 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 659 327 231 41 0 chr4 9709024 9709107 -145921013 + B1F2 SINE Alu 12 97 -52 2 659 222 37 0 0 chr4 9709121 9709148 -145920972 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 659 892 208 94 25 chr4 9709377 9709543 -145920577 + B3 SINE B2 1 165 -51 2 659 207 0 0 0 chr4 9709543 9709566 -145920554 + (CATA)n Simple_repeat Simple_repeat 4 26 0 2 659 892 208 94 25 chr4 9709566 9709601 -145920519 + B3 SINE B2 166 216 0 2 659 454 226 82 75 chr4 9710721 9710732 -145919388 - B1_Mur1 SINE Alu -1 148 139 2 659 210 71 0 0 chr4 9710732 9710760 -145919360 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 2 659 454 226 82 75 chr4 9710760 9710882 -145919238 - B1_Mur1 SINE Alu -11 138 14 2 659 1113 244 120 26 chr4 9711503 9711844 -145918276 + MTEa LTR MaLR 1 373 -6 2 659 664 255 6 0 chr4 9712911 9713068 -145917052 - MTEa LTR MaLR 0 379 222 2 659 1190 138 10 0 chr4 9713127 9713323 -145916797 - RMER6A LTR ERVK -558 198 1 2 659 600 218 67 13 chr4 9713444 9713593 -145916527 - MTEa LTR MaLR -198 181 25 2 659 1920 286 70 6 chr4 9713623 9714336 -145915784 - L1MA9 LINE L1 -236 6076 5318 2 659 217 333 113 35 chr4 9714738 9714968 -145915152 - L2 LINE L2 -343 3076 2829 2 659 504 277 18 12 chr4 9714985 9715153 -145914967 - L1MC4a LINE L1 -2041 5841 5673 2 659 195 280 66 13 chr4 9715735 9715811 -145914309 - L2c LINE L2 -45 3342 3263 2 659 606 308 226 8 chr4 9715981 9716380 -145913740 - MLT1D LTR MaLR -19 486 1 3 659 189 0 0 0 chr4 9716812 9716833 -145913287 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 659 1215 53 29 0 chr4 9717358 9717605 -145912515 + (CA)n Simple_repeat Simple_repeat 1 254 0 3 659 1219 246 71 55 chr4 9718131 9718384 -145911736 - ORR1D1 LTR MaLR 0 374 117 3 659 333 0 0 0 chr4 9718384 9718421 -145911699 + (TCC)n Simple_repeat Simple_repeat 2 38 0 3 659 1219 246 71 55 chr4 9718421 9718533 -145911587 - ORR1D1 LTR MaLR -258 116 3 3 659 1156 341 81 16 chr4 9718828 9719615 -145910505 + L1_Mur3 LINE L1 4614 5451 -429 3 659 709 118 0 0 chr4 9719617 9719727 -145910393 + B2_Mm2 SINE B2 7 116 -79 3 659 370 276 81 35 chr4 9721121 9721294 -145908826 + MLT1A LTR MaLR 176 356 -18 3 659 398 296 71 42 chr4 9721744 9721956 -145908164 + MIR SINE MIR 43 260 -2 3 659 195 42 0 0 chr4 9723232 9723256 -145906864 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 3 659 331 293 20 10 chr4 9724181 9724281 -145905839 + LTR53 LTR ERVL 11 111 -408 3 659 420 349 107 57 chr4 9724352 9724402 -145905718 - L2 LINE L2 -716 2703 2658 3 659 1388 214 106 12 chr4 9724402 9724742 -145905378 - ORR1D1 LTR MaLR 0 374 3 3 659 420 349 107 57 chr4 9724742 9725074 -145905046 - L2 LINE L2 -762 2657 2302 3 659 180 339 0 33 chr4 9725947 9726008 -145904112 + MIR SINE MIR 54 112 -150 3 659 184 184 26 0 chr4 9726250 9726288 -145903832 - MIRm SINE MIR 0 276 238 3 659 696 116 8 30 chr4 9726430 9726563 -145903557 + CT-rich Low_complexity Low_complexity 2 131 0 3 659 1382 17 0 27 chr4 9726565 9726750 -145903370 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 659 750 23 0 0 chr4 9726750 9726838 -145903282 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 3 659 271 250 0 81 chr4 9726842 9726916 -145903204 - ID4_ SINE ID -12 71 4 3 659 687 203 8 0 chr4 9726953 9727076 -145903044 - B3 SINE B2 -90 126 3 3 659 1020 231 98 7 chr4 9727086 9727426 -145902694 - L1MB3 LINE L1 0 6180 5821 3 659 501 17 0 0 chr4 9727426 9727484 -145902636 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 659 360 167 0 0 chr4 9727488 9727548 -145902572 - B4 SINE B4 -18 274 215 3 659 333 122 0 0 chr4 9727729 9727778 -145902342 - Lx7 LINE L1 -906 6790 6742 3 659 308 133 0 0 chr4 9727788 9727833 -145902287 - Lx7 LINE L1 -1262 6434 6390 3 659 732 152 62 97 chr4 9728115 9728341 -145901779 + Lx7 LINE L1 7357 7574 -122 3 659 10978 12 0 2 chr4 9728351 9730295 -145899825 - L1Md_T LINE L1 0 6582 4643 3 659 522 103 177 65 chr4 9730294 9730418 -145899702 + Lx7 LINE L1 7559 7696 0 3 659 6092 118 1 9 chr4 9730871 9731772 -145898348 - Lx2 LINE L1 0 6997 6104 3 659 292 255 21 21 chr4 9731908 9732004 -145898116 + MIR SINE MIR 104 199 -63 3 659 867 174 7 0 chr4 9732021 9732165 -145897955 + B1_Mus2 SINE Alu 3 147 0 3 659 184 333 62 62 chr4 9732876 9732972 -145897148 + MIRm SINE MIR 168 263 -13 3 659 193 309 61 41 chr4 9733027 9733125 -145896995 - L4 LINE RTE -1574 455 356 3 659 492 59 0 0 chr4 9734292 9734360 -145895760 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 659 543 306 14 7 chr4 9734365 9734513 -145895607 - RSINE1 SINE B4 -14 151 3 3 659 247 143 20 0 chr4 9735020 9735069 -145895051 - MTEb LTR MaLR -20 359 310 3 659 3861 131 16 16 chr4 9735074 9735702 -145894418 + Lx2A1 LINE L1 6379 7006 -2 3 659 797 247 152 40 chr4 9735734 9736037 -145894083 - MTEb LTR MaLR -42 337 1 3 659 286 382 0 10 chr4 9736041 9736144 -145893976 - MTEb-int LTR MaLR -4 1576 1475 3 659 878 326 34 58 chr4 9736114 9736210 -145893910 - MTEb-int LTR MaLR -864 506 415 3 659 225 0 0 0 chr4 9736210 9736235 -145893885 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 659 1483 268 67 14 chr4 9736235 9736654 -145893466 - MTEb-int LTR MaLR -1138 442 2 3 659 298 269 32 0 chr4 9736923 9737016 -145893104 + CT-rich Low_complexity Low_complexity 5 100 0 3 659 735 196 249 0 chr4 9737173 9737346 -145892774 + B3 SINE B2 1 216 0 3 659 185 296 65 94 chr4 9737787 9737925 -145892195 - L3 LINE CR1 -2147 2342 2209 3 659 329 238 87 40 chr4 9738774 9738923 -145891197 + Lx7 LINE L1 7265 7420 -276 3 659 941 111 37 0 chr4 9738952 9739087 -145891033 - B1_Mus1 SINE Alu -8 140 1 3 659 333 171 59 22 chr4 9739453 9739549 -145890571 - ORR1A4 LTR MaLR 0 384 274 3 659 14298 70 4 2 chr4 9739549 9742016 -145888104 - L1Md_F2 LINE L1 -53 6529 4059 3 659 1617 114 18 169 chr4 9742016 9742354 -145887766 - ORR1A4 LTR MaLR -42 287 1 3 659 265 200 0 0 chr4 9742636 9742681 -145887439 - MTC LTR MaLR 0 421 377 3 659 1817 151 10 20 chr4 9742697 9742994 -145887126 - MTC LTR MaLR -127 294 1 3 659 504 0 0 0 chr4 9743022 9743078 -145887042 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 659 1530 211 64 32 chr4 9743095 9743501 -145886619 + MTD LTR MaLR 1 419 0 3 659 794 286 128 35 chr4 9744205 9744571 -145885549 + MER106B DNA MER1_type 49 448 -611 3 659 213 39 0 0 chr4 9744632 9744658 -145885462 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 659 1363 87 38 0 chr4 9744659 9744844 -145885276 - B2_Mm2 SINE B2 -3 192 1 3 659 393 288 43 8 chr4 9746662 9746804 -145883316 + MIRb SINE MIR 2 146 -122 3 659 1601 259 6 22 chr4 9746847 9747264 -145882856 - MTE2b LTR MaLR -1 378 1 3 659 273 289 59 66 chr4 9748708 9748860 -145881260 + MIR SINE MIR 110 260 -2 3 659 795 199 103 16 chr4 9748922 9749116 -145881004 + MTD LTR MaLR 175 385 -34 3 659 205 53 25 50 chr4 9749123 9749163 -145880957 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 659 1021 216 107 115 chr4 9749428 9749810 -145880310 + MTE2a LTR MaLR 1 379 0 3 659 185 387 26 35 chr4 9750361 9750476 -145879644 + L2b LINE L2 2968 3081 -294 3 659 414 308 43 57 chr4 9750745 9750946 -145879174 + ID_B1 SINE B4 2 199 -25 3 659 214 256 0 0 chr4 9750946 9750989 -145879131 + ID4 SINE ID 1 43 -40 3 659 415 295 9 0 chr4 9753551 9753656 -145876464 + MTEb LTR MaLR 272 377 -2 3 659 666 196 72 0 chr4 9753974 9754112 -145876008 + B1_Mur4 SINE Alu 3 150 0 3 659 305 224 30 0 chr4 9754155 9754222 -145875898 - L1MEg LINE L1 -4132 1952 1884 3 659 907 74 7 7 chr4 9754222 9754244 -145875876 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 3 659 1326 78 0 0 chr4 9754244 9754424 -145875696 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 659 907 74 7 7 chr4 9754424 9754452 -145875668 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 3 659 1224 101 0 0 chr4 9754452 9754630 -145875490 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 659 1326 77 2 2 chr4 9754630 9754896 -145875224 + (TTCC)n Simple_repeat Simple_repeat 1 266 0 3 659 651 26 0 0 chr4 9754896 9754973 -145875147 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 3 659 598 235 30 8 chr4 9754986 9755119 -145875001 - B1_Mur2 SINE Alu -12 137 2 3 659 351 0 0 0 chr4 9755119 9755158 -145874962 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 659 204 40 0 0 chr4 9755199 9755224 -145874896 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 659 696 76 0 118 chr4 9755238 9755416 -145874704 + (TG)n Simple_repeat Simple_repeat 1 157 0 3 659 315 0 0 0 chr4 9755488 9755523 -145874597 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 659 606 99 6 106 chr4 9755537 9755707 -145874413 + (TG)n Simple_repeat Simple_repeat 1 153 0 3 659 338 326 18 140 chr4 9755707 9755878 -145874242 - RSINE1 SINE B4 0 165 16 3 659 330 232 58 0 chr4 9757186 9757255 -145872865 - ID4 SINE ID -7 76 4 3 659 348 83 0 0 chr4 9759715 9759763 -145870357 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 659 198 103 0 0 chr4 9759810 9759839 -145870281 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 3 659 681 101 0 0 chr4 9759842 9759941 -145870179 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 659 258 32 0 0 chr4 9759941 9759972 -145870148 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 659 680 154 0 0 chr4 9759987 9760091 -145870029 - Lx9 LINE L1 -220 7424 7321 3 659 213 324 0 13 chr4 9760128 9760203 -145869917 + GA-rich Low_complexity Low_complexity 3 76 0 3 659 183 323 112 12 chr4 9760929 9761089 -145869031 + MIR3 SINE MIR 30 205 -3 3 659 2399 137 106 47 chr4 9761149 9761679 -145868441 + RLTR31_Mm LTR ERVK 1 561 0 3 659 743 271 100 59 chr4 9761764 9762035 -145868085 + B4A SINE B4 6 287 -5 3 659 224 249 130 50 chr4 9762935 9762975 -145867145 - B1F1 SINE Alu -1 119 26 3 659 250 250 31 0 chr4 9762975 9763039 -145867081 - MT2B2 LTR ERVL -343 241 176 3 659 553 273 47 63 chr4 9763047 9763287 -145866833 - L1MB3 LINE L1 -14 6169 5929 3 659 536 241 34 24 chr4 9763546 9763697 -145866423 + B1F2 SINE Alu 1 149 -1 3 659 366 115 51 0 chr4 9765106 9765184 -145864936 + CT-rich Low_complexity Low_complexity 2 83 0 3 659 1986 185 28 15 chr4 9765442 9765831 -145864289 + ORR1B1 LTR MaLR 1 394 0 3 659 432 229 45 27 chr4 9765998 9766110 -145864010 + PB1D10 SINE Alu 1 114 -3 3 659 428 0 19 0 chr4 9766111 9766163 -145863957 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 659 396 0 0 0 chr4 9766163 9766206 -145863914 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 659 282 95 0 0 chr4 9766540 9766582 -145863538 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 659 418 331 17 17 chr4 9766826 9766998 -145863122 - B3A SINE B2 0 198 27 3 659 772 174 7 28 chr4 9766999 9767141 -145862979 - B1_Mur2 SINE Alu 0 149 11 3 659 953 200 27 44 chr4 9767382 9767607 -145862513 + Lx4A LINE L1 6834 7054 -4 3 659 441 289 29 29 chr4 9768005 9768144 -145861976 - B1_Mur1 SINE Alu 0 149 11 3 659 378 61 0 0 chr4 9768817 9768866 -145861254 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 659 376 309 40 8 chr4 9769894 9770018 -145860102 + MIRb SINE MIR 121 248 -20 3 659 21 0 0 0 chr4 9771011 9771032 -145859088 + GC_rich Low_complexity Low_complexity 1 21 0 3 659 414 326 135 20 chr4 9775001 9775201 -145854919 - MIR SINE MIR 0 262 40 3 659 489 76 0 0 chr4 9775697 9775763 -145854357 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 659 369 0 0 0 chr4 9780600 9780641 -145849479 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 659 26 30 0 0 chr4 9780674 9780707 -145849413 + AT_rich Low_complexity Low_complexity 1 33 0 4 659 216 200 0 0 chr4 9782475 9782515 -145847605 + CT-rich Low_complexity Low_complexity 2 41 0 4 659 217 317 0 35 chr4 9783848 9783933 -145846187 + CT-rich Low_complexity Low_complexity 5 86 0 4 659 769 128 112 8 chr4 9784029 9784163 -145845957 + B1_Mur4 SINE Alu 1 148 -2 4 659 1129 102 0 0 chr4 9789757 9789904 -145840216 + B1_Mus1 SINE Alu 2 148 0 4 659 220 290 104 8 chr4 9790159 9790284 -145839836 - MIR SINE MIR -31 231 95 4 659 378 0 0 0 chr4 9791178 9791220 -145838900 + (TAG)n Simple_repeat Simple_repeat 1 42 0 4 659 367 265 9 38 chr4 9791360 9791466 -145838654 - PB1D10 SINE Alu 0 117 15 4 659 194 264 36 36 chr4 9791563 9791618 -145838502 + L2a LINE L2 3308 3362 -64 4 659 2369 21 7 11 chr4 9791640 9791926 -145838194 - L1Md_F3 LINE L1 -3 6581 6297 4 659 758 239 19 38 chr4 9792119 9792328 -145837792 + B3A SINE B2 1 205 -11 4 659 519 147 0 0 chr4 9792331 9792433 -145837687 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 659 27 29 0 0 chr4 9792856 9792890 -145837230 + AT_rich Low_complexity Low_complexity 1 34 0 4 659 257 253 138 0 chr4 9793015 9793102 -145837018 + B1F SINE Alu 3 101 -48 4 659 484 320 34 55 chr4 9793118 9793353 -145836767 + B4A SINE B4 41 270 -22 4 659 410 327 27 0 chr4 9793401 9793551 -145836569 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 659 212 139 28 0 chr4 9793551 9793587 -145836533 + PB1D7 SINE Alu 67 103 -17 4 659 273 57 0 0 chr4 9793587 9793622 -145836498 + (CAAG)n Simple_repeat Simple_repeat 4 38 0 4 659 197 209 0 0 chr4 9794225 9794268 -145835852 - L2a LINE L2 -25 3401 3359 4 659 6408 62 1 5 chr4 9795402 9796203 -145833917 + L1Md_F2 LINE L1 5782 6579 -3 4 659 213 210 0 0 chr4 9796420 9796482 -145833638 + CT-rich Low_complexity Low_complexity 1 62 0 4 659 219 88 0 0 chr4 9796503 9796537 -145833583 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 659 526 309 93 0 chr4 9796682 9796821 -145833299 - RSINE1 SINE B4 -2 163 12 4 659 648 299 0 20 chr4 9796859 9797057 -145833063 - B3A SINE B2 0 198 5 4 659 3449 30 5 0 chr4 9797621 9798015 -145832105 - MTA_Mm LTR MaLR 0 396 1 4 659 9162 42 6 1 chr4 9798015 9799108 -145831012 - MTA_Mm-int LTR MaLR 0 1098 1 4 659 3198 37 42 0 chr4 9799108 9799488 -145830632 - MTA_Mm LTR MaLR 0 396 1 4 659 358 204 68 68 chr4 9800113 9800260 -145829860 - B1F SINE Alu -1 148 2 4 659 673 167 0 27 chr4 9801035 9801220 -145828900 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 659 463 254 155 62 chr4 9801240 9801433 -145828687 - B4 SINE B4 -28 264 54 4 659 563 24 47 0 chr4 9803178 9803263 -145826857 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 659 2174 261 29 12 chr4 9803263 9804268 -145825852 + Lx5 LINE L1 6123 7050 0 4 659 643 59 0 89 chr4 9804694 9804806 -145825314 + L1_Mus1 LINE L1 6465 6566 -1 4 659 1826 41 0 0 chr4 9804903 9805121 -145824999 + L1Md_T LINE L1 6365 6582 0 4 659 631 152 21 48 chr4 9805592 9805737 -145824383 + Lx3B LINE L1 6832 6972 -1 4 659 516 274 38 99 chr4 9805759 9805970 -145824150 - B3A SINE B2 0 198 1 4 659 259 247 68 0 chr4 9806101 9806174 -145823946 + PB1D10 SINE Alu 32 109 -8 4 659 192 111 0 0 chr4 9806518 9806554 -145823566 + (CAGAGA)n Simple_repeat Simple_repeat 1 36 0 4 659 658 149 7 7 chr4 9806564 9806699 -145823421 + GA-rich Low_complexity Low_complexity 2 136 0 4 659 536 229 45 129 chr4 9809094 9809295 -145820825 + MER20 DNA MER1_type 36 219 0 4 659 224 252 0 0 chr4 9809351 9809415 -145820705 - MIR SINE MIR -14 254 192 4 659 1651 289 64 41 chr4 9810650 9811644 -145818476 + L1MB2 LINE L1 5162 6167 -4 4 659 548 257 7 19 chr4 9813216 9813371 -145816749 - B3A SINE B2 -11 187 35 4 659 722 256 25 25 chr4 9813417 9813621 -145816499 - B3 SINE B2 -6 210 7 4 659 2559 115 25 5 chr4 9814016 9814409 -145815711 - L1_Mus3 LINE L1 0 6638 6238 4 659 917 214 46 16 chr4 9814745 9814948 -145815172 + B3 SINE B2 1 195 0 4 659 431 223 250 0 chr4 9815453 9815565 -145814555 + RSINE1 SINE B4 9 148 -17 4 659 1529 64 29 19 chr4 9817613 9817820 -145812300 + L1_Mus1 LINE L1 6359 6567 0 4 659 537 32 0 0 chr4 9817827 9817889 -145812231 - L1Md_F2 LINE L1 -650 5932 5871 4 659 4876 63 0 8 chr4 9817889 9818508 -145811612 + L1Md_F2 LINE L1 5967 6580 -2 4 659 313 252 0 15 chr4 9818912 9819049 -145811071 + CT-rich Low_complexity Low_complexity 2 136 0 4 659 379 244 17 17 chr4 9819080 9819255 -145810865 + CT-rich Low_complexity Low_complexity 1 175 0 4 659 259 186 10 40 chr4 9819290 9819391 -145810729 + CT-rich Low_complexity Low_complexity 3 100 0 4 659 264 269 38 13 chr4 9819413 9819492 -145810628 - B1F1 SINE Alu -60 89 9 4 659 1387 95 16 16 chr4 9820690 9820882 -145809238 - B2_Mm2 SINE B2 -3 192 1 4 659 5427 230 62 21 chr4 9821403 9822508 -145807612 + Lx7 LINE L1 6096 7221 -475 4 659 3044 30 8 11 chr4 9822508 9822880 -145807240 + L1Md_F3 LINE L1 6214 6584 0 4 659 5427 230 62 21 chr4 9822880 9823124 -145806996 + Lx7 LINE L1 7222 7499 -197 4 659 262 301 89 0 chr4 9823117 9823240 -145806880 + Lx6 LINE L1 7319 7452 -8 4 659 507 112 0 0 chr4 9823401 9823481 -145806639 + (CATA)n Simple_repeat Simple_repeat 4 83 0 4 659 276 127 0 0 chr4 9825347 9825402 -145804718 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 659 1670 211 33 8 chr4 9825826 9826194 -145803926 - ORR1C2 LTR MaLR -7 377 1 4 659 407 313 52 37 chr4 9826284 9826420 -145803700 - B1F SINE Alu -5 144 7 4 659 275 368 26 0 chr4 9826440 9826554 -145803566 + PB1 SINE Alu 1 117 -10 4 659 1142 287 19 45 chr4 9828450 9828826 -145801294 - ORR1D2 LTR MaLR 0 370 5 4 659 449 250 9 18 chr4 9829692 9829806 -145800314 - B1_Mur2 SINE Alu -32 117 5 4 82 1900 184 27 3 chr4 9830362 9830727 -145799393 - RMER15 LTR ERVL 0 575 202 4 660 5616 67 51 7 chr4 9830750 9831375 -145798745 - L1_Mus3 LINE L1 0 6638 5980 4 660 1077 80 7 0 chr4 9831375 9831512 -145798608 - B1_Mus2 SINE Alu -5 142 5 4 660 5616 67 51 7 chr4 9831512 9831654 -145798466 - L1_Mus3 LINE L1 -659 5979 5837 4 660 4941 89 6 0 chr4 9831655 9832477 -145797643 - L1_Mus3 LINE L1 -650 5988 5162 4 660 563 183 17 0 chr4 9832538 9832658 -145797462 + (CATA)n Simple_repeat Simple_repeat 2 123 0 4 660 228 327 72 48 chr4 9832812 9832979 -145797141 + MLT1K LTR MaLR 36 206 -389 4 660 891 232 50 0 chr4 9833334 9833532 -145796588 - B3 SINE B2 -7 209 2 4 660 1519 262 88 18 chr4 9834180 9834740 -145795380 + Lx6 LINE L1 5800 6401 -649 4 660 301 96 0 0 chr4 9835042 9835094 -145795026 - L1_Mus4 LINE L1 -246 6390 6339 4 660 1394 133 36 0 chr4 9835095 9835343 -145794777 + L1_Mm LINE L1 5189 5445 -438 4 660 1722 75 0 20 chr4 9835343 9835589 -145794531 + L1_Mus4 LINE L1 6396 6636 0 4 660 1819 246 120 23 chr4 9835756 9836356 -145793764 - Lx9 LINE L1 -307 7337 6680 4 660 1038 294 56 0 chr4 9836487 9836810 -145793310 + Lx9 LINE L1 6342 6682 -962 4 660 258 325 103 0 chr4 9836899 9837016 -145793104 - MER5B DNA MER1_type -44 134 6 4 660 216 143 0 0 chr4 9837057 9837099 -145793021 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 4 660 206 220 0 39 chr4 9837121 9837173 -145792947 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 4 660 328 254 0 0 chr4 9837199 9837270 -145792850 - PB1D10 SINE Alu -46 71 1 4 660 220 283 0 0 chr4 9837218 9837278 -145792842 - B4A SINE B4 -155 137 78 4 660 185 366 14 27 chr4 9837979 9838052 -145792068 + L2b LINE L2 3286 3357 -18 4 660 375 23 0 0 chr4 9839015 9839059 -145791061 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 660 226 328 167 15 chr4 9839851 9840055 -145790065 + L2c LINE L2 2923 3157 -230 4 660 200 331 25 0 chr4 9840074 9840195 -145789925 + CT-rich Low_complexity Low_complexity 4 127 0 4 660 688 241 74 6 chr4 9840442 9840605 -145789515 + ORR1E LTR MaLR 6 179 -180 4 660 190 380 26 9 chr4 9841467 9841581 -145788539 + MIRc SINE MIR 37 152 -116 4 660 305 229 64 9 chr4 9841823 9841933 -145788187 + L1MA10 LINE L1 6216 6331 -3 4 660 1353 274 25 20 chr4 9842141 9842498 -145787622 + ORR1E LTR MaLR 1 359 0 4 660 1227 261 52 24 chr4 9842627 9843014 -145787106 - MTD LTR MaLR -2 398 1 4 660 225 276 18 37 chr4 9843072 9843181 -145786939 - L1M2 LINE L1 -376 5927 5821 4 660 268 306 0 0 chr4 9843190 9843252 -145786868 - ID4_ SINE ID -20 63 2 4 660 222 278 27 14 chr4 9843268 9843341 -145786779 - B1F SINE Alu -9 140 67 4 660 201 196 0 0 chr4 9843400 9843446 -145786674 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 660 222 37 0 0 chr4 9843487 9843514 -145786606 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 660 285 322 0 0 chr4 9843520 9843610 -145786510 - L1M2 LINE L1 -514 5777 5688 4 660 408 235 107 90 chr4 9844849 9845083 -145785037 - L1M2 LINE L1 -493 5671 5434 4 660 925 270 301 47 chr4 9845508 9845890 -145784230 - MLT1D LTR MaLR 0 505 27 4 660 1813 140 31 81 chr4 9846045 9846325 -145783795 - ORR1B1 LTR MaLR -15 379 117 4 660 2704 25 3 52 chr4 9846325 9846669 -145783451 - IAPLTR2b LTR ERVK 0 327 1 4 660 1813 140 31 81 chr4 9846669 9846745 -145783375 - ORR1B1 LTR MaLR -278 116 41 4 660 534 278 24 112 chr4 9847037 9847207 -145782913 + RSINE1 SINE B4 11 165 0 4 660 949 146 78 25 chr4 9848487 9848691 -145781429 - RLTR13D5 LTR ERVK 0 1023 809 4 660 2606 59 41 22 chr4 9848671 9849035 -145781085 - RLTR13D5 LTR ERVK -336 687 317 4 660 39448 5 0 0 chr4 9849040 9855621 -145774499 - L1Md_A LINE L1 0 6582 2 4 660 2395 91 9 6 chr4 9855621 9855953 -145774167 - RLTR13D5 LTR ERVK -690 333 1 4 660 441 0 0 0 chr4 9856402 9856451 -145773669 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 660 349 285 120 100 chr4 9856488 9856710 -145773410 - B4 SINE B4 -12 280 57 5 660 227 277 85 0 chr4 9856828 9856922 -145773198 - L1MC5 LINE L1 -549 7412 7311 5 660 2078 276 108 13 chr4 9857287 9857559 -145772561 - Lx8 LINE L1 -373 7100 6762 5 660 1373 103 103 0 chr4 9857559 9857763 -145772357 - URR1B DNA MER1_type 0 225 1 5 660 2078 276 108 13 chr4 9857763 9858205 -145771915 - Lx8 LINE L1 -712 6761 6318 5 660 2252 201 32 13 chr4 9858403 9858866 -145771254 - Lx2B LINE L1 -8 6992 6521 5 660 348 280 7 22 chr4 9859214 9859349 -145770771 - L1MC5 LINE L1 -1042 6919 6787 5 660 402 333 19 74 chr4 9859389 9859551 -145770569 + B4A SINE B4 8 160 -132 5 660 2434 253 60 107 chr4 9859571 9860442 -145769678 + Lx5 LINE L1 6211 7040 -10 5 660 664 296 7 56 chr4 9860489 9860710 -145769410 + B4 SINE B4 92 279 -13 5 660 465 282 45 6 chr4 9861243 9861421 -145768699 + L1MEc LINE L1 4 188 -6212 5 660 431 271 151 47 chr4 9861489 9861807 -145768313 + L1MEc LINE L1 312 662 -5738 5 660 531 248 197 7 chr4 9861823 9861965 -145768155 + B3A SINE B2 2 170 -28 5 660 815 261 67 0 chr4 9861979 9862174 -145767946 - RMER13B LTR ERVK 0 908 701 5 660 447 137 0 0 chr4 9862178 9862251 -145767869 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 660 360 0 0 0 chr4 9862288 9862328 -145767792 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 660 459 0 0 0 chr4 9862588 9862639 -145767481 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 660 630 257 36 36 chr4 9862830 9863024 -145767096 + RLTR16 LTR ERVK 24 217 -288 5 660 1026 318 8 0 chr4 9863385 9863646 -145766474 + B4 SINE B4 26 288 -4 5 660 1175 48 0 33 chr4 9863717 9863869 -145766251 - B1_Mm SINE Alu 0 147 1 5 660 25 0 0 0 chr4 9863943 9863968 -145766152 + AT_rich Low_complexity Low_complexity 1 25 0 5 660 209 132 26 0 chr4 9864128 9864166 -145765954 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 660 628 244 117 15 chr4 9864211 9864407 -145765713 + Lx8 LINE L1 6257 6472 -1001 5 660 967 225 123 22 chr4 9864422 9864699 -145765421 + Lx8 LINE L1 7047 7351 -122 5 660 200 205 0 0 chr4 9864699 9864738 -145765382 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 660 269 120 0 39 chr4 9865042 9865094 -145765026 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 5 660 465 191 39 78 chr4 9865210 9865363 -145764757 + MER96B DNA hAT 91 237 -180 5 660 399 127 0 0 chr4 9865976 9866039 -145764081 + (TTA)n Simple_repeat Simple_repeat 2 64 0 5 660 1564 218 13 52 chr4 9866039 9866422 -145763698 - RLTR17 LTR ERVK -324 368 1 5 660 2153 196 41 43 chr4 9866422 9867009 -145763111 - RMER3D-int LTR ERVK 0 2842 2257 5 660 6648 73 22 5 chr4 9867028 9868019 -145762101 - L1VL4 LINE L1 -1068 2491 1484 5 660 1647 29 5 5 chr4 9868019 9868227 -145761893 + MTA_Mm LTR MaLR 1 208 -188 5 660 2297 89 34 3 chr4 9868176 9868503 -145761617 - MT2C_Mm LTR ERVL -138 337 1 5 660 302 0 0 0 chr4 9868503 9868541 -145761579 - MERVL-int LTR ERVL 0 5485 5448 5 660 323 167 26 53 chr4 9868541 9868617 -145761503 - ORR1A3-int LTR MaLR -1323 640 567 5 660 4539 73 11 6 chr4 9868617 9869329 -145760791 - MERVL-int LTR ERVL -132 5629 4765 5 660 1481 27 16 0 chr4 9869329 9869514 -145760606 - MTA_Mm LTR MaLR -208 188 1 5 660 4106 85 5 27 chr4 9869516 9870610 -145759510 - L1VL4 LINE L1 -2073 1486 408 5 660 14021 157 44 5 chr4 9870607 9873555 -145756565 - L1VL4 LINE L1 -1703 4183 1116 5 660 5223 146 20 17 chr4 9874417 9875297 -145754823 + Lx2B LINE L1 6118 7000 0 5 660 347 263 43 9 chr4 9876920 9877035 -145753085 - L2a LINE L2 -158 3268 3150 5 660 1682 235 71 0 chr4 9877035 9877414 -145752706 + MTD LTR MaLR 1 406 -13 5 660 184 359 0 15 chr4 9877986 9878051 -145752069 - L2a LINE L2 -242 3133 3070 5 660 465 50 0 0 chr4 9878424 9878484 -145751636 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 660 226 368 0 0 chr4 9878489 9878557 -145751563 - ID4 SINE ID -14 69 2 5 660 24 32 0 0 chr4 9878557 9878588 -145751532 + AT_rich Low_complexity Low_complexity 1 31 0 5 660 353 235 116 134 chr4 9879690 9879735 -145750385 + ORR1E LTR MaLR 79 124 -235 5 660 813 40 0 0 chr4 9879735 9879836 -145750284 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 5 660 353 235 116 134 chr4 9879836 9880065 -145750055 + ORR1E LTR MaLR 125 347 -12 5 660 281 267 19 38 chr4 9880220 9880325 -145749795 + MER20 DNA MER1_type 9 111 -108 5 660 3426 81 9 2 chr4 9880450 9880910 -145749210 + L1_Mus3 LINE L1 6161 6623 -15 5 660 484 91 0 0 chr4 9880916 9880993 -145749127 + L1_Mus3 LINE L1 6556 6632 -6 5 660 246 212 43 57 chr4 9881535 9881605 -145748515 - ID4_ SINE ID -14 69 1 5 660 969 245 9 14 chr4 9881737 9881952 -145748168 - B3 SINE B2 -1 215 2 5 660 1015 108 0 9 chr4 9881961 9882194 -145747926 + (TTC)n Simple_repeat Simple_repeat 1 230 0 5 660 271 113 38 0 chr4 9882446 9882499 -145747621 + (TATG)n Simple_repeat Simple_repeat 4 58 0 5 660 329 347 102 31 chr4 9882517 9882645 -145747475 - RSINE1 SINE B4 -19 146 10 5 660 190 308 15 30 chr4 9883206 9883273 -145746847 - L2a LINE L2 -10 3416 3351 5 660 387 0 0 0 chr4 9883343 9883386 -145746734 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 660 413 191 9 0 chr4 9883386 9883491 -145746629 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 660 906 108 25 0 chr4 9885080 9885238 -145744882 + (TCCC)n Simple_repeat Simple_repeat 3 164 0 5 660 647 197 31 87 chr4 9885588 9885783 -145744337 - MTEa LTR MaLR -38 341 158 5 660 26 0 0 0 chr4 9885999 9886025 -145744095 + AT_rich Low_complexity Low_complexity 1 26 0 5 660 364 154 46 0 chr4 9886345 9886410 -145743710 - tRNA-Gln-CAA_ tRNA tRNA -3 72 5 5 660 635 248 39 0 chr4 9887160 9887289 -145742831 - MTEa LTR MaLR -236 143 10 5 660 1463 34 0 0 chr4 9887362 9887540 -145742580 - L1Md_F2 LINE L1 -4 6578 6401 5 660 2462 182 55 18 chr4 9887687 9888180 -145741940 - RLTR20B3 LTR ERVK -28 549 39 5 660 349 298 22 67 chr4 9888360 9888540 -145741580 - L1M5 LINE L1 -1443 4703 4532 5 660 2101 126 9 9 chr4 9888878 9889199 -145740921 + ORR1A4 LTR MaLR 1 321 -8 5 660 300 336 155 43 chr4 9889356 9889633 -145740487 + L2 LINE L2 2489 2796 -623 5 660 2602 178 69 19 chr4 9890070 9890609 -145739511 + RMER4B LTR ERVK 18 583 -2 5 660 308 293 70 15 chr4 9890768 9890989 -145739131 - L1M5 LINE L1 -2337 3809 3583 5 660 272 70 23 0 chr4 9891011 9891054 -145739066 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 660 768 237 25 20 chr4 9891054 9891079 -145739041 - Lx5 LINE L1 -13 7037 7013 5 660 381 43 0 0 chr4 9891079 9891126 -145738994 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 5 660 2335 211 118 20 chr4 9891126 9891766 -145738354 - Lx5 LINE L1 -38 7012 6309 5 660 3066 212 44 6 chr4 9891763 9892122 -145737998 + Lx5 LINE L1 5670 6028 -1022 5 660 414 0 0 0 chr4 9892122 9892168 -145737952 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 660 3066 212 44 6 chr4 9892168 9892443 -145737677 + Lx5 LINE L1 6029 6327 -723 5 660 445 244 35 0 chr4 9892581 9892667 -145737453 + B1F1 SINE Alu 27 115 -34 5 660 7463 75 3 0 chr4 9892732 9893674 -145736446 + L1_Mus1 LINE L1 5623 6567 0 5 660 340 296 30 41 chr4 9893877 9894046 -145736074 - MT2A LTR ERVL -292 241 75 5 660 234 325 143 0 chr4 9893978 9894104 -145736016 - MTE2a LTR MaLR -232 147 4 5 660 224 353 31 56 chr4 9895468 9895630 -145734490 + L2c LINE L2 3225 3382 -5 5 660 309 303 81 8 chr4 9895875 9895998 -145734122 + MER94 DNA AcHobo 3 134 0 5 660 205 395 33 16 chr4 9896664 9896785 -145733335 - L2 LINE L2 -972 2447 2325 5 660 1182 116 11 11 chr4 9898097 9898280 -145731840 - L1_Mus3 LINE L1 -3 6635 6453 5 660 1470 82 19 24 chr4 9898280 9898493 -145731627 + L1_Mus3 LINE L1 6257 6468 -170 5 660 42 71 0 0 chr4 9899354 9899438 -145730682 + AT_rich Low_complexity Low_complexity 1 84 0 5 660 180 0 0 0 chr4 9899583 9899603 -145730517 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 660 486 310 93 26 chr4 9899610 9899834 -145730286 - MLT1F1 LTR MaLR -24 629 372 5 660 246 296 153 27 chr4 9899914 9900025 -145730095 - MLT1F1 LTR MaLR -345 234 110 5 660 223 328 117 97 chr4 9900285 9901081 -145729039 - L2 LINE L2 -373 3046 2235 5 660 203 156 0 0 chr4 9901450 9901482 -145728638 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 660 234 0 0 0 chr4 9901496 9901522 -145728598 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 660 1190 82 6 0 chr4 9901522 9901680 -145728440 - B2_Mm2 SINE B2 -34 161 3 5 660 291 329 0 12 chr4 9902317 9902400 -145727720 - LFSINE_Vert SINE SINE -30 429 348 5 660 457 273 44 29 chr4 9902632 9902768 -145727352 + B1F1 SINE Alu 6 143 -6 5 660 2848 269 52 16 chr4 9903668 9904463 -145725657 + Lx8 LINE L1 6574 7396 -77 5 660 414 352 69 69 chr4 9904482 9904671 -145725449 + B3A SINE B2 9 197 -1 5 660 21 36 0 0 chr4 9904738 9904766 -145725354 + AT_rich Low_complexity Low_complexity 1 28 0 5 660 24 0 0 0 chr4 9905275 9905299 -145724821 + AT_rich Low_complexity Low_complexity 1 24 0 5 660 318 301 246 11 chr4 9905983 9906185 -145723935 + MIR SINE MIR 3 243 -25 5 660 554 277 20 20 chr4 9906714 9906865 -145723255 - RSINE1 SINE B4 -4 161 11 5 660 281 351 57 6 chr4 9908366 9908541 -145721579 - Tigger7 DNA MER2_type -45 2446 2263 5 660 228 86 0 0 chr4 9909163 9909198 -145720922 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5 660 427 297 90 66 chr4 9909474 9909730 -145720390 - MLT1L LTR MaLR 0 610 349 5 660 285 285 123 62 chr4 9910088 9910234 -145719886 - MLT1L-int LTR MaLR -63 1324 1170 5 660 269 303 124 83 chr4 9910245 9910414 -145719706 + MLT1J LTR MaLR 21 196 -316 5 660 422 238 1 45 chr4 9910648 9910750 -145719370 - B1F SINE Alu -21 99 2 5 660 499 250 260 8 chr4 9911075 9911333 -145718787 + MER33 DNA MER1_type 1 323 -1 5 660 598 352 44 24 chr4 9911579 9911873 -145718247 - MLT1L-int LTR MaLR -453 934 635 5 660 1134 186 35 22 chr4 9913615 9913846 -145716274 - Lx4B LINE L1 -476 6582 6349 5 660 2382 172 21 2 chr4 9913859 9914295 -145715825 - L1_Mur2 LINE L1 -607 5270 4827 5 660 7823 52 2 12 chr4 9914297 9915272 -145714848 - L1Md_F2 LINE L1 -1 6581 5617 5 660 9299 154 26 24 chr4 9915279 9916956 -145713164 - L1_Mur2 LINE L1 -1048 4829 3147 5 660 1389 61 0 0 chr4 9916956 9917136 -145712984 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 660 9299 154 26 24 chr4 9917136 9917160 -145712960 - L1_Mur2 LINE L1 -2731 3146 3124 5 660 747 0 0 0 chr4 9917160 9917243 -145712877 + (TTC)n Simple_repeat Simple_repeat 1 83 0 5 660 459 155 0 40 chr4 9917243 9917344 -145712776 - MusHAL1 LINE L1 -761 1951 1855 6 660 1934 204 14 3 chr4 9918255 9918618 -145711502 + ORR1B2 LTR MaLR 1 367 0 6 660 569 149 11 0 chr4 9918963 9919057 -145711063 + ORR1D1 LTR MaLR 1 95 -279 6 660 581 0 14 0 chr4 9919111 9919180 -145710940 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 6 660 28 0 0 0 chr4 9919810 9919838 -145710282 + AT_rich Low_complexity Low_complexity 1 28 0 6 660 242 290 233 33 chr4 9919914 9920064 -145710056 + MLT1J LTR MaLR 326 505 -7 6 660 281 339 84 53 chr4 9920415 9920457 -145709663 + MER63A DNA AcHobo 6 58 -152 6 660 405 0 0 0 chr4 9920457 9920502 -145709618 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 660 281 339 84 53 chr4 9920502 9920590 -145709530 + MER63A DNA AcHobo 59 140 -70 6 660 203 333 12 12 chr4 9920734 9920819 -145709301 - MIRc SINE MIR -46 222 138 6 660 227 294 134 60 chr4 9921212 9921346 -145708774 + MIRb SINE MIR 87 230 -38 6 660 348 24 0 0 chr4 9921476 9921517 -145708603 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 660 675 316 112 29 chr4 9922633 9923018 -145707102 + MLT1C LTR MaLR 20 436 -31 6 660 243 158 0 0 chr4 9923026 9923064 -145707056 - MLT1C LTR MaLR -2 465 428 6 660 1738 138 35 47 chr4 9923198 9923517 -145706603 + ORR1A4 LTR MaLR 1 315 -14 6 660 838 62 53 0 chr4 9923707 9923820 -145706300 - L1_Mus2 LINE L1 0 6566 6448 6 660 455 118 13 0 chr4 9924497 9924573 -145705547 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 660 3015 97 44 40 chr4 9924640 9925113 -145705007 - IAPLTR2_Mm LTR ERVK 0 475 1 6 660 185 349 69 8 chr4 9925301 9925431 -145704689 - MIR SINE MIR -46 216 79 6 660 206 209 0 0 chr4 9925404 9925447 -145704673 + MIR SINE MIR 209 251 -11 6 660 327 113 0 0 chr4 9927060 9927113 -145703007 + (TAGG)n Simple_repeat Simple_repeat 1 53 0 6 660 294 29 0 0 chr4 9927113 9927147 -145702973 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 6 660 360 0 0 0 chr4 9927673 9927713 -145702407 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 660 745 311 38 26 chr4 9928234 9928498 -145701622 + B4A SINE B4 24 290 -2 6 660 382 216 16 41 chr4 9929330 9929451 -145700669 - MER121 Unknown Unknown -193 219 102 6 660 2103 95 3 69 chr4 9929877 9930226 -145699894 + IAPLTR1a_Mm LTR ERVK 1 326 -11 6 660 24720 11 7 3 chr4 9930227 9933004 -145697116 + IAPEz-int LTR ERVK 1 2751 -3730 6 660 29443 14 3 0 chr4 9932996 9936224 -145693896 + IAPEz-int LTR ERVK 3244 6481 0 6 660 2103 95 3 69 chr4 9936224 9936573 -145693547 + IAPLTR1a_Mm LTR ERVK 1 326 -11 6 660 654 101 14 35 chr4 9936688 9936832 -145693288 + (TATG)n Simple_repeat Simple_repeat 3 143 0 6 660 187 137 13 52 chr4 9936943 9937020 -145693100 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 660 572 179 5 43 chr4 9938847 9939034 -145691086 + GA-rich Low_complexity Low_complexity 1 180 0 6 660 428 169 0 49 chr4 9939007 9939169 -145690951 + (CAGAGA)n Simple_repeat Simple_repeat 4 157 0 6 660 206 378 55 11 chr4 9939605 9939696 -145690424 - MIRb SINE MIR -149 119 18 6 660 1976 269 50 6 chr4 9939700 9940633 -145689487 - Lx5 LINE L1 -1 7049 6179 6 660 3874 190 12 24 chr4 9940633 9941389 -145688731 - Lx5 LINE L1 -96 5781 5035 6 660 489 101 38 0 chr4 9941389 9941468 -145688652 - L1Md_F2 LINE L1 0 6582 6501 6 660 31207 48 1 1 chr4 9941488 9947411 -145682709 - L1Md_A LINE L1 -2 6583 563 6 660 947 192 0 5 chr4 9947415 9947603 -145682517 - L1Md_A LINE L1 -6253 366 180 6 660 6282 189 38 25 chr4 9947607 9949422 -145680698 - L1_Mur2 LINE L1 -3220 2657 892 6 660 182 171 122 0 chr4 9949754 9949795 -145680325 - MIR SINE MIR -214 48 3 6 660 926 293 100 14 chr4 9949921 9950683 -145679437 - L1M5 LINE L1 -2954 3192 2366 6 660 231 316 0 0 chr4 9950833 9950890 -145679230 - ID SINE ID -158 66 10 6 660 8038 55 0 4 chr4 9951228 9952297 -145677823 + L1Md_F2 LINE L1 4522 5586 -297 6 660 7745 53 12 5 chr4 9952298 9953274 -145676846 + L1Md_F2 LINE L1 5588 6570 -12 6 660 1032 259 93 67 chr4 9954844 9955188 -145674932 - ORR1E LTR MaLR -4 355 3 6 660 249 220 94 35 chr4 9955892 9955977 -145674143 + MTEa LTR MaLR 285 374 -5 6 660 280 292 0 62 chr4 9956651 9956797 -145673323 + CT-rich Low_complexity Low_complexity 3 139 0 6 660 960 119 0 18 chr4 9957884 9958055 -145672065 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 6 660 478 196 18 9 chr4 9958232 9958345 -145671775 - RMER17A-int LTR ERVK -518 1210 1097 6 660 459 186 10 0 chr4 9958421 9958523 -145671597 - RMER17A-int LTR ERVK -641 1087 985 6 660 599 142 12 92 chr4 9958559 9958722 -145671398 - RMER17A-int LTR ERVK -737 991 842 6 660 279 0 0 0 chr4 9959321 9959352 -145670768 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 660 531 0 0 0 chr4 9959352 9959410 -145670710 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 660 3933 200 33 51 chr4 9959558 9960479 -145669641 - RMER13B LTR ERVK -4 904 1 6 660 1370 213 71 65 chr4 9960565 9960623 -145669497 + ORR1C2 LTR MaLR 1 55 -329 6 82 5178 97 9 72 chr4 9960623 9961480 -145668640 - RLTR13B4 LTR ERVK 0 803 1 6 661 1370 213 71 65 chr4 9961480 9961803 -145668317 + ORR1C2 LTR MaLR 56 384 0 6 661 278 289 36 12 chr4 9962348 9962432 -145667688 - MIRc SINE MIR -160 108 23 6 661 233 350 32 77 chr4 9963096 9963251 -145666869 - MLT1C LTR MaLR -60 407 260 6 661 210 37 0 0 chr4 9964436 9964463 -145665657 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 661 1934 247 52 16 chr4 9964472 9965086 -145665034 - L1_Rod LINE L1 -99 5748 5113 6 661 423 309 30 38 chr4 9965078 9965340 -145664780 + Lx9 LINE L1 7174 7433 -211 6 661 567 43 0 0 chr4 9965354 9965424 -145664696 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 661 706 280 33 110 chr4 9965572 9965873 -145664247 - MTEa LTR MaLR -3 376 99 6 661 2040 157 230 4 chr4 9965942 9966436 -145663684 - RLTR17 LTR ERVK -86 606 1 6 661 310 294 0 96 chr4 9966436 9966529 -145663591 - MTEa LTR MaLR -295 84 1 6 661 1968 235 49 15 chr4 9967105 9967572 -145662548 + Lx6 LINE L1 6967 7449 -11 6 661 926 279 87 15 chr4 9968100 9968435 -145661685 + MLT1B LTR MaLR 32 390 0 6 661 941 0 9 0 chr4 9969190 9969299 -145660821 + (TTC)n Simple_repeat Simple_repeat 2 111 0 6 661 1307 256 9 107 chr4 9969867 9970287 -145659833 - MTE2a LTR MaLR 0 379 1 6 661 1779 291 201 31 chr4 9970292 9971022 -145659098 - MTE2a-int LTR MaLR -32 1548 695 6 661 797 261 64 0 chr4 9971100 9971303 -145658817 - MTE2a-int LTR MaLR -1221 359 144 6 661 2388 222 22 16 chr4 9971566 9972148 -145657972 + RMER1C Other Other 749 1334 -8 6 661 5258 40 8 3 chr4 9972891 9973540 -145656580 - L1Md_F3 LINE L1 0 6584 5933 6 661 522 241 54 14 chr4 9974090 9974237 -145655883 - RMER1C Other Other -1065 277 125 6 661 1071 51 58 0 chr4 9974698 9974836 -145655284 - B1_Mm SINE Alu 0 147 2 6 661 367 219 7 66 chr4 9974859 9974996 -145655124 - Lx4B LINE L1 -7 7051 6923 6 661 229 182 45 0 chr4 9975410 9975454 -145654666 + GA-rich Low_complexity Low_complexity 4 49 0 6 661 365 234 178 16 chr4 9975664 9975855 -145654265 - Lx9 LINE L1 -63 7581 7360 6 661 1083 243 133 95 chr4 9976151 9976542 -145653578 + MTD LTR MaLR 1 406 -13 6 661 554 188 0 6 chr4 9977294 9977465 -145652655 + (TA)n Simple_repeat Simple_repeat 2 171 0 6 661 400 370 73 84 chr4 9977627 9977938 -145652182 - B4 SINE B4 -13 279 1 6 661 275 319 114 46 chr4 9977982 9978219 -145651901 - Lx8 LINE L1 -28 7445 7193 6 661 29 0 0 0 chr4 9979386 9979415 -145650705 + AT_rich Low_complexity Low_complexity 1 29 0 6 661 657 193 238 6 chr4 9980771 9980943 -145649177 + B3 SINE B2 1 212 -4 6 661 632 281 129 82 chr4 9981369 9981425 -145648695 - ORR1E LTR MaLR -2 357 303 6 661 225 0 0 0 chr4 9981425 9981450 -145648670 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 661 207 0 0 0 chr4 9981450 9981472 -145648648 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 661 632 281 129 82 chr4 9981472 9981755 -145648365 - ORR1E LTR MaLR -57 302 2 6 661 453 19 0 0 chr4 9982312 9982366 -145647754 + (CTA)n Simple_repeat Simple_repeat 3 56 0 6 661 227 103 0 25 chr4 9982367 9982407 -145647713 + (TAA)n Simple_repeat Simple_repeat 2 40 0 6 661 28 48 0 0 chr4 9982878 9982920 -145647200 + AT_rich Low_complexity Low_complexity 1 42 0 6 661 543 16 0 0 chr4 9983241 9983305 -145646815 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 661 357 184 41 0 chr4 9983370 9983468 -145646652 + L1MA9 LINE L1 6190 6291 -21 6 661 530 310 119 47 chr4 9983489 9983959 -145646161 - Charlie2b DNA MER1_type -454 2328 1825 6 661 496 343 120 21 chr4 9984252 9984577 -145645543 - MLT1A1 LTR MaLR 0 408 52 6 661 599 296 153 22 chr4 9984612 9984840 -145645280 - MLT1G LTR MaLR -220 371 114 6 661 345 344 109 26 chr4 9984927 9985157 -145644963 - Charlie2b DNA MER1_type -2533 249 1 6 661 284 279 14 14 chr4 9986164 9986233 -145643887 + ID4 SINE ID 8 76 -7 6 661 701 331 82 41 chr4 9986272 9986612 -145643508 - ORR1E LTR MaLR -5 354 1 6 661 2868 210 76 30 chr4 9986989 9987763 -145642357 + RMER13B LTR ERVK 5 908 0 6 661 33834 73 10 4 chr4 9988392 9994509 -145635611 - L1Md_F2 LINE L1 0 6582 446 6 661 2115 117 88 6 chr4 9995074 9995427 -145634693 + ORR1B1 LTR MaLR 5 386 -8 6 661 236 321 109 47 chr4 9995452 9995645 -145634475 + MIR SINE MIR 7 211 -51 6 661 2591 280 86 47 chr4 9995794 9997156 -145632964 - Lx6 LINE L1 -26 7434 5746 6 661 435 171 0 0 chr4 9997152 9997234 -145632886 - L1_Mm LINE L1 -368 5515 5434 6 661 527 293 55 48 chr4 9997485 9997728 -145632392 - Charlie5 DNA MER1_type -4 2620 2376 6 661 355 339 30 91 chr4 9997728 9997926 -145632194 + ORR1E LTR MaLR 4 189 -170 6 661 570 282 95 42 chr4 9998431 9998725 -145631395 + MLT1C LTR MaLR 176 505 0 6 661 381 240 353 0 chr4 9999151 9999301 -145630819 - B3 SINE B2 -13 203 1 6 661 494 300 43 27 chr4 10001071 10001256 -145628864 + B4A SINE B4 11 198 -94 1 661 777 239 10 94 chr4 10001267 10001470 -145628650 - B4A SINE B4 -102 190 5 2 661 234 62 0 0 chr4 10003871 10003903 -145626217 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 661 460 285 90 0 chr4 10004197 10004341 -145625779 + MTD LTR MaLR 263 419 0 4 661 1478 284 121 22 chr4 10004341 10004873 -145625247 + MER82 DNA MER2_type 69 653 0 5 661 807 289 50 79 chr4 10004933 10005275 -145624845 + MER2 DNA MER2_type 4 335 -10 6 661 597 307 115 22 chr4 10005871 10006141 -145623979 + MLT1A0 LTR MaLR 1 295 -70 7 661 365 233 36 80 chr4 10008200 10008312 -145621808 + B1_Mur2 SINE Alu 43 150 0 8 661 252 200 0 0 chr4 10010309 10010369 -145619751 + GA-rich Low_complexity Low_complexity 2 61 0 9 661 555 242 83 51 chr4 10010408 10010565 -145619555 - RSINE1 SINE B4 -1 164 3 1 661 226 207 0 0 chr4 10010592 10010650 -145619470 - L1MA7 LINE L1 -20 6271 6214 1 661 204 172 0 0 chr4 10010711 10010769 -145619351 + T-rich Low_complexity Low_complexity 3 60 0 1 661 501 17 0 0 chr4 10012396 10012454 -145617666 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 661 937 276 102 58 chr4 10014245 10014588 -145615532 - MTE2a LTR MaLR -14 365 8 1 661 1239 34 7 0 chr4 10015280 10015426 -145614694 + B1_Mus2 SINE Alu 1 147 0 1 661 5313 181 41 9 chr4 10016248 10017305 -145612815 - Lx2B LINE L1 0 7000 5911 1 661 204 159 0 22 chr4 10017828 10017873 -145612247 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 661 10595 229 72 55 chr4 10019094 10020667 -145609453 + L1Md_F2 LINE L1 551 2194 -3683 1 661 369 0 0 0 chr4 10020667 10020708 -145609412 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 661 10595 229 40 77 chr4 10020708 10020771 -145609349 + L1Md_F2 LINE L1 2195 2231 -3646 1 661 1077 97 7 0 chr4 10020771 10020916 -145609204 + B1_Mm SINE Alu 2 147 0 2 661 14452 137 20 32 chr4 10020916 10024399 -145605721 + L1Md_F2 LINE L1 2232 5586 -297 1 661 7833 54 3 13 chr4 10024399 10025393 -145604727 + L1Md_F2 LINE L1 5587 6570 -12 1 661 6354 160 78 47 chr4 10025398 10026595 -145603525 + Lx6 LINE L1 2260 3535 -2345 2 661 408 88 0 0 chr4 10026595 10026652 -145603468 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2 661 510 61 0 0 chr4 10026652 10026717 -145603403 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2 661 231 146 89 18 chr4 10026719 10026775 -145603345 - MER46C DNA MER2_type -29 309 250 2 661 6354 160 78 47 chr4 10026775 10027127 -145602993 + Lx6 LINE L1 3538 3917 -1963 2 661 6706 206 22 28 chr4 10027125 10028918 -145601202 + Lx6 LINE L1 5356 7149 -311 2 661 39362 5 0 0 chr4 10029115 10034591 -145595529 - L1Md_A LINE L1 0 6582 1107 2 661 15417 20 1 0 chr4 10034588 10036471 -145593649 - L1Md_T LINE L1 -350 5533 3650 2 661 699 24 0 0 chr4 10036459 10036542 -145593578 + L1Md_T LINE L1 5504 5586 -297 2 661 9043 5 0 0 chr4 10036542 10037538 -145592582 + L1Md_T LINE L1 5587 6582 0 2 661 9137 22 1 3 chr4 10037543 10038859 -145591261 - L1Md_A LINE L1 -5604 1120 1 2 661 255 237 74 67 chr4 10038847 10038996 -145591124 + Lx7 LINE L1 7396 7545 -151 2 661 265 297 27 0 chr4 10040036 10040110 -145590010 - RSINE1 SINE B4 -2 163 88 2 661 28 48 0 0 chr4 10040328 10040370 -145589750 + AT_rich Low_complexity Low_complexity 1 42 0 2 661 447 338 19 13 chr4 10040432 10040591 -145589529 + RSINE1 SINE B4 3 162 -3 3 661 830 297 75 27 chr4 10041173 10041430 -145588690 + B4A SINE B4 25 292 0 3 661 273 152 0 0 chr4 10041689 10041748 -145588372 - Lx9 LINE L1 0 7644 7586 3 661 465 156 52 0 chr4 10041759 10041855 -145588265 - Lx9 LINE L1 -166 7478 7378 3 661 192 147 0 68 chr4 10042611 10042684 -145587436 + A-rich Low_complexity Low_complexity 1 68 0 3 661 21 0 0 0 chr4 10043643 10043664 -145586456 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 22 70 0 0 chr4 10043696 10043739 -145586381 + AT_rich Low_complexity Low_complexity 1 43 0 3 661 435 212 12 0 chr4 10044310 10044390 -145585730 + ID4_ SINE ID 1 81 -2 3 661 2943 161 70 4 chr4 10044403 10044957 -145585163 - Lx5 LINE L1 -153 6897 6307 3 661 246 269 19 0 chr4 10044978 10045030 -145585090 + RSINE1 SINE B4 88 140 -25 3 661 346 284 43 87 chr4 10045069 10045300 -145584820 + L1MD LINE L1 3637 3857 -2289 3 661 239 322 88 30 chr4 10045330 10045730 -145584390 + L1M5 LINE L1 3896 4318 -1828 4 661 21 0 0 0 chr4 10045913 10045934 -145584186 + AT_rich Low_complexity Low_complexity 1 21 0 4 661 326 256 72 36 chr4 10046529 10046667 -145583453 - L1MC4a LINE L1 -1924 5958 5816 4 661 319 306 69 44 chr4 10046952 10047314 -145582806 - L1MA9 LINE L1 -40 6272 5902 4 661 256 240 13 13 chr4 10047369 10047445 -145582675 + L1M3 LINE L1 4340 4415 -1725 4 661 2316 175 196 32 chr4 10047451 10048215 -145581905 - RMER6C LTR ERVK 0 720 1 4 661 1912 288 58 24 chr4 10048215 10049202 -145580918 + L1M3 LINE L1 4410 5434 -866 4 661 334 324 16 11 chr4 10049225 10049409 -145580711 + L1M3 LINE L1 5629 5813 -478 4 661 180 77 0 0 chr4 10051598 10051624 -145578496 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 4 661 375 308 97 37 chr4 10052441 10052657 -145577463 - MIRc SINE MIR -24 244 16 4 661 21 26 0 26 chr4 10052779 10052799 -145577321 + AT_rich Low_complexity Low_complexity 1 20 0 4 661 2414 89 43 6 chr4 10052799 10053150 -145576970 - Lx3_Mus LINE L1 -8 7001 6638 4 661 21 26 0 26 chr4 10053150 10053168 -145576952 + AT_rich Low_complexity Low_complexity 1 18 0 5 661 632 299 101 24 chr4 10053339 10053595 -145576525 + ORR1E LTR MaLR 1 265 -105 5 661 601 269 0 79 chr4 10053573 10053605 -145576515 + ORR1E LTR MaLR 194 219 -160 5 661 822 112 28 96 chr4 10053605 10053783 -145576337 - L1_Mus4 LINE L1 -7 6629 6464 5 661 601 269 0 79 chr4 10053783 10053952 -145576168 + ORR1E LTR MaLR 220 379 0 5 661 549 80 0 0 chr4 10053969 10054044 -145576076 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 661 333 320 105 19 chr4 10054214 10054631 -145575489 - L1M5 LINE L1 -2000 5882 5430 5 661 296 362 25 17 chr4 10054635 10054753 -145575367 - B4 SINE B4 0 292 174 5 661 237 270 111 0 chr4 10054766 10054829 -145575291 - B4 SINE B4 -219 73 4 5 661 456 374 87 49 chr4 10055123 10055674 -145574446 - L1M5 LINE L1 -1036 5110 4539 5 661 31711 102 19 7 chr4 10055681 10061390 -145568730 - L1_Mus1 LINE L1 -266 6301 523 5 661 261 308 39 0 chr4 10062032 10062136 -145567984 - L1MC4 LINE L1 -520 7441 7334 5 661 1127 82 0 45 chr4 10062447 10062462 -145567658 - B1_Mus2 SINE Alu 0 147 137 5 661 351 0 0 0 chr4 10062462 10062501 -145567619 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 661 1127 82 0 45 chr4 10062501 10062639 -145567481 - B1_Mus2 SINE Alu -11 136 1 5 661 459 299 85 17 chr4 10062641 10062897 -145567223 - L1MC4 LINE L1 -869 7013 6731 5 661 536 279 26 74 chr4 10063389 10063660 -145566460 - L1M7 LINE L1 -4742 1674 1417 6 661 291 333 0 9 chr4 10066004 10066110 -145564010 - Lx7 LINE L1 -388 7308 7204 6 661 1075 172 79 32 chr4 10066106 10066322 -145563798 + Lx3C LINE L1 6745 6970 -6 6 661 236 186 14 54 chr4 10066383 10066457 -145563663 + A-rich Low_complexity Low_complexity 6 76 0 6 661 2110 258 35 30 chr4 10066460 10067064 -145563056 - Lx7 LINE L1 -474 7222 6616 6 661 2552 191 48 12 chr4 10067101 10067604 -145562516 - RLTR17 LTR ERVK -73 619 99 6 661 403 347 64 56 chr4 10067724 10068066 -145562054 - L1M7 LINE L1 -5911 489 145 6 661 3932 219 74 40 chr4 10069708 10070766 -145559354 - Lx9 LINE L1 0 7644 6551 6 661 22 56 0 0 chr4 10071903 10071939 -145558181 + AT_rich Low_complexity Low_complexity 1 36 0 6 661 236 28 0 53 chr4 10072466 10072504 -145557616 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 661 334 272 105 0 chr4 10072615 10072729 -145557391 + MLT2F LTR ERVL 1 126 -537 6 661 675 314 18 9 chr4 10073026 10073251 -145556869 + MER2 DNA MER2_type 93 319 -26 6 661 198 0 0 0 chr4 10073280 10073302 -145556818 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 661 1311 244 137 6 chr4 10073897 10074256 -145555864 - MTD LTR MaLR -14 405 1 7 661 220 374 92 31 chr4 10074580 10074776 -145555344 - MIRb SINE MIR -6 262 55 7 661 541 256 60 70 chr4 10075047 10075232 -145554888 - MTEa LTR MaLR -7 372 190 7 661 347 354 0 0 chr4 10075270 10075369 -145554751 - MTEa LTR MaLR -260 99 1 7 661 749 204 29 0 chr4 10076514 10076651 -145553469 + B1_Mur3 SINE Alu 2 142 -7 7 661 445 299 32 74 chr4 10077490 10077707 -145552413 + MIR SINE MIR 35 242 -20 7 661 22 35 0 0 chr4 10077717 10077746 -145552374 + AT_rich Low_complexity Low_complexity 1 29 0 7 661 21 36 0 0 chr4 10078112 10078140 -145551980 + AT_rich Low_complexity Low_complexity 1 28 0 7 661 4595 82 14 3 chr4 10079085 10079671 -145550449 - L1Md_F2 LINE L1 0 6582 5991 7 661 468 128 0 0 chr4 10080511 10080589 -145549531 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 661 427 194 43 0 chr4 10081309 10081402 -145548718 + MLT1A1 LTR MaLR 275 371 -37 8 661 2967 209 51 5 chr4 10081428 10082040 -145548080 + Lx7 LINE L1 6767 7406 -290 8 661 207 0 0 0 chr4 10082078 10082101 -145548019 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 661 495 0 0 0 chr4 10082208 10082263 -145547857 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 661 546 16 0 0 chr4 10082443 10082506 -145547614 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 661 190 300 17 0 chr4 10082576 10082636 -145547484 - L2c LINE L2 -84 3303 3243 8 661 552 100 0 0 chr4 10083467 10083547 -145546573 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 661 6511 50 0 0 chr4 10083706 10084488 -145545632 + L1Md_T LINE L1 5623 6404 -178 8 661 451 301 33 47 chr4 10084647 10084797 -145545323 + RSINE1 SINE B4 3 150 -15 8 661 1431 66 0 4 chr4 10084800 10085074 -145545046 + (TC)n Simple_repeat Simple_repeat 1 273 0 8 661 405 0 0 0 chr4 10085074 10085119 -145545001 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 661 269 315 73 89 chr4 10085709 10086012 -145544108 - L2c LINE L2 -45 3342 3045 9 661 269 295 0 59 chr4 10086413 10086514 -145543606 + MIRb SINE MIR 91 185 -83 9 82 37399 32 40 6 chr4 10086727 10092898 -145537222 - L1Md_T LINE L1 -1 6581 207 9 662 774 48 0 0 chr4 10093629 10093732 -145536388 + (TC)n Simple_repeat Simple_repeat 2 104 0 9 662 1874 28 36 5 chr4 10094031 10094250 -145535870 - L1Md_F3 LINE L1 -1 6583 6358 9 662 217 382 43 77 chr4 10094627 10094953 -145535167 + L2 LINE L2 1486 1800 -1619 9 662 2006 213 18 60 chr4 10094992 10095056 -145535064 - Lx6 LINE L1 -11 7449 7395 9 662 2712 177 36 149 chr4 10095056 10095745 -145534375 - RMER19C LTR ERVK 0 611 1 9 662 2006 213 18 60 chr4 10095745 10096130 -145533990 - Lx6 LINE L1 -66 7394 7019 9 662 239 254 0 0 chr4 10096128 10096183 -145533937 + Lx7 LINE L1 6971 7025 -671 9 662 676 326 117 65 chr4 10096245 10096359 -145533761 + L2 LINE L2 2175 2291 -1128 9 662 2619 159 31 17 chr4 10096359 10096774 -145533346 - MTC LTR MaLR 0 421 1 1 662 676 326 117 65 chr4 10096774 10096860 -145533260 + L2 LINE L2 2292 2365 -1054 9 662 3722 79 4 0 chr4 10096860 10097318 -145532802 - Lx3_Mus LINE L1 -6 7003 6544 1 662 676 326 117 65 chr4 10097318 10097765 -145532355 + L2 LINE L2 2366 2857 -562 9 662 653 286 102 18 chr4 10099203 10099488 -145530632 - MER74A LTR ERVL 0 558 250 1 662 3566 45 30 2 chr4 10099660 10100088 -145530032 + L1Md_F3 LINE L1 6145 6584 0 1 662 1268 239 141 12 chr4 10100427 10100761 -145529359 + MTEa LTR MaLR 1 377 -2 1 662 196 357 81 10 chr4 10101143 10101242 -145528878 - MIRb SINE MIR -162 106 1 1 662 7591 1 1 0 chr4 10103763 10104550 -145525570 - L1Md_A LINE L1 0 6582 5795 1 662 437 306 65 99 chr4 10104795 10105158 -145524962 - MLT1D LTR MaLR -119 386 28 1 662 1332 261 61 3 chr4 10105465 10105811 -145524309 + ORR1D2 LTR MaLR 5 370 0 1 662 9145 71 0 3 chr4 10105837 10106998 -145523122 - L1_Mm LINE L1 -339 5544 4387 1 662 3796 75 12 6 chr4 10106998 10107479 -145522641 + L1Md_F2 LINE L1 6099 6582 0 1 662 246 308 0 0 chr4 10108617 10108695 -145521425 + T-rich Low_complexity Low_complexity 1 78 0 1 662 509 160 20 0 chr4 10108816 10108916 -145521204 + CT-rich Low_complexity Low_complexity 4 105 0 1 662 290 29 0 0 chr4 10108916 10108950 -145521170 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 1 662 877 160 11 11 chr4 10108950 10109127 -145520993 + CT-rich Low_complexity Low_complexity 2 178 0 1 662 234 0 0 0 chr4 10109297 10109323 -145520797 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1 662 449 47 0 15 chr4 10109712 10109777 -145520343 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 662 30443 73 1 2 chr4 10110635 10115830 -145514290 - L1Md_F LINE L1 -348 5535 344 1 662 23 0 0 0 chr4 10116135 10116158 -145513962 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 2857 40 0 5 chr4 10118353 10118725 -145511395 + L1Md_F2 LINE L1 6189 6558 -24 1 662 315 0 0 0 chr4 10118725 10118760 -145511360 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 662 1226 232 11 0 chr4 10118837 10119121 -145510999 + Lx6 LINE L1 7170 7456 -4 1 662 669 296 91 48 chr4 10119403 10119712 -145510408 - MER58B DNA MER1_type -16 325 4 1 662 230 29 97 42 chr4 10119912 10119984 -145510136 + A-rich Low_complexity Low_complexity 5 80 0 1 662 244 291 81 11 chr4 10120263 10120350 -145509770 + L3 LINE CR1 4300 4392 -97 1 662 239 246 0 0 chr4 10122029 10122090 -145508030 - MER44D DNA MER2_type -588 117 57 1 662 326 107 18 0 chr4 10122190 10122246 -145507874 + (TATG)n Simple_repeat Simple_repeat 3 59 0 1 662 1061 115 0 0 chr4 10122641 10122789 -145507331 + B1_Mus1 SINE Alu 1 148 0 1 662 408 326 69 77 chr4 10122956 10123202 -145506918 - MamRep38 DNA hAT -50 245 2 1 662 496 286 205 11 chr4 10123387 10123717 -145506403 + MLT1B LTR MaLR 6 387 -3 1 662 1201 161 4 59 chr4 10123723 10123961 -145506159 - URR1B DNA MER1_type 0 225 1 1 662 824 281 43 54 chr4 10123968 10124246 -145505874 + B4A SINE B4 2 276 -16 1 662 295 301 97 57 chr4 10125335 10125511 -145504609 - MTE2a LTR MaLR -16 363 181 1 662 188 88 0 56 chr4 10125539 10125575 -145504545 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 1 662 2623 80 91 25 chr4 10126320 10126522 -145503598 - BGLII_Mus LTR ERVK 0 422 192 1 662 978 74 0 0 chr4 10126522 10126671 -145503449 + (TC)n Simple_repeat Simple_repeat 2 150 0 1 662 2623 80 91 25 chr4 10126671 10126864 -145503256 - BGLII_Mus LTR ERVK -231 191 1 1 662 803 52 0 49 chr4 10126865 10127007 -145503113 + (TTTTG)n Simple_repeat Simple_repeat 4 138 0 1 662 473 314 122 68 chr4 10127108 10127144 -145502976 - MLT2D LTR ERVL -14 400 369 1 662 739 57 19 0 chr4 10127144 10127249 -145502871 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 662 473 314 122 68 chr4 10127249 10127506 -145502614 - MLT2D LTR ERVL -46 368 93 1 662 229 244 194 73 chr4 10128687 10128811 -145501309 - L3 LINE CR1 -1122 3367 3229 1 662 4389 261 78 9 chr4 10129777 10130415 -145499705 - Lx6 LINE L1 -14 7446 6729 1 662 279 0 0 0 chr4 10130415 10130446 -145499674 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 662 4389 261 78 9 chr4 10130446 10131107 -145499013 - Lx6 LINE L1 -732 6728 6058 1 662 551 183 21 0 chr4 10131320 10131413 -145498707 + B3A SINE B2 3 97 -101 1 662 230 294 58 71 chr4 10131413 10131471 -145498649 + B4A SINE B4 7 155 -137 1 662 826 206 129 24 chr4 10132630 10132839 -145497281 - RLTR24 LTR ERV1 -2 527 297 1 662 792 143 15 22 chr4 10132845 10132981 -145497139 - RLTR24 LTR ERV1 -389 140 6 1 662 293 254 0 15 chr4 10133222 10133277 -145496843 + ORR1E LTR MaLR 1 54 -316 1 662 319 193 0 0 chr4 10133277 10133334 -145496786 + MTD LTR MaLR 1 57 -364 1 662 276 204 0 0 chr4 10133332 10133376 -145496744 + MTD LTR MaLR 307 350 -71 1 662 420 129 53 4 chr4 10133400 10133480 -145496640 + MTD LTR MaLR 343 419 0 1 662 4844 180 18 34 chr4 10133479 10134412 -145495708 + MTD-int LTR MaLR 2 919 -339 1 662 310 255 29 87 chr4 10134405 10134508 -145495612 + ORR1E LTR MaLR 261 357 -2 1 662 258 256 122 0 chr4 10135738 10135820 -145494300 + MLT1I LTR MaLR 57 148 -263 1 662 899 220 14 46 chr4 10136013 10136232 -145493888 - B3 SINE B2 -4 212 1 1 662 220 342 26 18 chr4 10137205 10137318 -145492802 - MIRb SINE MIR -50 218 105 1 662 199 324 0 101 chr4 10137523 10137602 -145492518 + L2 LINE L2 2736 2806 -613 1 662 1559 253 91 12 chr4 10137780 10138361 -145491759 - L1MC1 LINE L1 -216 6117 5491 1 662 392 222 50 0 chr4 10138391 10138490 -145491630 - Lx8 LINE L1 -487 6986 6883 1 662 297 250 79 10 chr4 10138497 10138598 -145491522 + Lx8 LINE L1 6969 7076 -397 1 662 411 289 105 43 chr4 10138836 10139216 -145490904 - RMER20B LTR ERVK -92 424 25 1 662 354 349 47 6 chr4 10139269 10139439 -145490681 - Lx8 LINE L1 -581 6892 6716 1 662 364 238 156 37 chr4 10139491 10139626 -145490494 - L1MC1 LINE L1 -2029 4117 3967 1 662 459 0 0 0 chr4 10139741 10139792 -145490328 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 662 702 288 112 39 chr4 10139796 10139908 -145490212 - Lx9 LINE L1 -183 7461 7350 1 662 243 0 0 0 chr4 10139908 10139935 -145490185 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 662 702 288 112 39 chr4 10139935 10140234 -145489886 - Lx9 LINE L1 -295 7349 7020 1 662 314 242 81 0 chr4 10140244 10140343 -145489777 - L1MC1 LINE L1 -2196 3950 3844 1 662 259 161 0 67 chr4 10140349 10140409 -145489711 - L1M1 LINE L1 -753 5547 5492 1 662 21 0 0 0 chr4 10141260 10141281 -145488839 + AT_rich Low_complexity Low_complexity 1 21 0 1 662 238 329 61 54 chr4 10141291 10141439 -145488681 + MIRc SINE MIR 1 149 -119 1 662 522 326 146 9 chr4 10143201 10143427 -145486693 - MLT2C1 LTR ERVL -123 274 18 1 662 406 338 111 3 chr4 10143507 10143795 -145486325 + L1MEg2 LINE L1 588 906 -5546 1 662 392 324 102 56 chr4 10143829 10144133 -145485987 + L1MEg2 LINE L1 3703 4020 -3434 1 662 411 317 60 20 chr4 10144162 10144513 -145485607 + L1M2 LINE L1 5001 5365 -778 1 662 1463 283 168 13 chr4 10144532 10145082 -145485038 - Lx8 LINE L1 -491 6982 6348 1 662 233 268 89 0 chr4 10145135 10145258 -145484862 + L1MEg2 LINE L1 5079 5212 -2242 1 662 308 316 139 19 chr4 10145399 10145615 -145484505 + L1ME3 LINE L1 5896 6137 -25 1 662 399 298 58 0 chr4 10147173 10147277 -145482843 - LTR16B2 LTR ERVL -8 454 345 1 662 252 86 0 0 chr4 10147427 10147462 -145482658 + (T)n Simple_repeat Simple_repeat 1 35 0 1 662 8652 1 0 0 chr4 10147473 10148608 -145481512 - L1Md_A LINE L1 0 6582 5448 1 662 664 325 47 39 chr4 10148753 10148987 -145481133 - MER102b DNA MER1_type -49 292 57 1 662 515 355 71 6 chr4 10149565 10149735 -145480385 - B3A SINE B2 -17 181 1 1 662 270 267 57 16 chr4 10149936 10150058 -145480062 - L1MA4A LINE L1 -386 5917 5791 1 662 374 323 128 5 chr4 10150376 10150594 -145479526 + L1M2 LINE L1 4352 4596 -1547 1 662 1625 266 23 5 chr4 10150598 10150995 -145479125 + MTD LTR MaLR 1 404 -15 1 662 3041 218 73 13 chr4 10151667 10152094 -145478026 + Lx5 LINE L1 889 1271 -4606 1 662 1137 61 0 13 chr4 10152094 10152243 -145477877 + B1_Mm SINE Alu 1 147 0 1 662 3041 231 136 68 chr4 10152243 10152291 -145477829 + Lx5 LINE L1 1272 1310 -4567 1 662 900 0 0 0 chr4 10152291 10152391 -145477729 + (GGAGA)n Simple_repeat Simple_repeat 4 103 0 1 662 3041 231 136 68 chr4 10152391 10152410 -145477710 + Lx5 LINE L1 1311 1329 -4548 1 662 5900 56 9 1 chr4 10152410 10153144 -145476976 + L1Md_F2 LINE L1 5824 6563 -19 1 662 3070 213 159 64 chr4 10153144 10154062 -145476058 + Lx5 LINE L1 1330 2363 -3517 1 662 296 56 0 0 chr4 10154062 10154098 -145476022 - U2 snRNA snRNA -152 36 1 1 662 3070 213 159 64 chr4 10154098 10154355 -145475765 + Lx5 LINE L1 2364 2654 -3226 1 662 3171 201 111 8 chr4 10154348 10155270 -145474850 + Lx5 LINE L1 5008 6017 -1033 1 662 309 51 0 0 chr4 10155270 10155309 -145474811 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 662 2907 280 100 30 chr4 10155309 10155399 -145474721 + Lx5 LINE L1 6018 6134 -916 1 662 369 0 0 0 chr4 10155399 10155440 -145474680 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 662 2907 280 100 30 chr4 10155440 10156280 -145473840 + Lx5 LINE L1 6135 7030 -20 1 662 677 256 19 14 chr4 10156348 10156558 -145473562 + L1M2 LINE L1 4594 4804 -1339 1 662 1040 302 97 6 chr4 10156710 10157183 -145472937 - Charlie13a DNA Charlie -902 612 97 1 662 308 259 0 0 chr4 10158881 10158939 -145471181 - ID4 SINE ID -17 66 9 1 662 461 325 103 58 chr4 10158943 10158986 -145471134 - MER45B DNA Tip100 -217 823 786 1 662 4181 72 0 8 chr4 10158986 10159519 -145470601 - L1_Mus1 LINE L1 -1 6566 6038 1 662 461 325 103 58 chr4 10159519 10159835 -145470285 - MER45B DNA Tip100 -255 785 448 1 662 8489 30 1 0 chr4 10159849 10160844 -145469276 + L1Md_A LINE L1 5587 6582 0 1 662 355 345 21 35 chr4 10161390 10161534 -145468586 - MER45B DNA Tip100 -689 351 210 1 662 237 323 71 50 chr4 10164491 10164631 -145465489 - LTR16E2 LTR ERVL 0 568 426 1 662 214 368 68 55 chr4 10164926 10165162 -145464958 - L2c LINE L2 -75 3312 3074 1 662 250 342 38 0 chr4 10166097 10166176 -145463944 + RSINE1 SINE B4 56 137 -28 1 662 477 0 0 0 chr4 10166179 10166232 -145463888 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 662 189 0 0 0 chr4 10166263 10166284 -145463836 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 1 662 395 261 8 25 chr4 10167488 10167610 -145462510 + GA-rich Low_complexity Low_complexity 5 124 0 1 662 656 282 113 76 chr4 10167704 10168074 -145462046 - MTE2a LTR MaLR -11 363 12 1 662 1176 254 84 64 chr4 10168444 10168801 -145461319 - ORR1D2 LTR MaLR -6 364 1 1 662 995 285 99 50 chr4 10170915 10171439 -145458681 + Lx9 LINE L1 7087 7636 -8 1 662 2192 328 33 14 chr4 10172092 10173007 -145457113 + Lx8 LINE L1 6345 7276 -197 1 662 6352 88 83 5 chr4 10173036 10174319 -145455801 - L1_Mus2 LINE L1 0 6566 5205 1 662 2288 55 0 0 chr4 10174304 10174596 -145455524 - L1_Mm LINE L1 -32 5851 5560 1 662 6303 168 44 29 chr4 10174569 10176547 -145453573 - L1_Mus2 LINE L1 -3643 2240 235 1 662 24 53 0 0 chr4 10176900 10176938 -145453182 + AT_rich Low_complexity Low_complexity 1 38 0 1 662 315 0 0 0 chr4 10177164 10177199 -145452921 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 662 198 0 0 0 chr4 10177543 10177565 -145452555 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1 662 937 245 19 5 chr4 10177572 10177785 -145452335 - ID_B1 SINE B4 -7 217 2 2 662 414 314 97 15 chr4 10178453 10178712 -145451408 + L1M5 LINE L1 5542 5821 -303 2 662 824 57 0 0 chr4 10179613 10179719 -145450401 - B1_Mm SINE Alu 0 147 42 2 662 253 212 42 115 chr4 10179648 10179744 -145450376 - RLTR25A LTR ERVK -521 582 494 2 662 272 333 11 32 chr4 10180809 10180902 -145449218 - MIR3 SINE MIR -2 206 116 2 662 270 161 24 36 chr4 10181905 10181989 -145448131 + CT-rich Low_complexity Low_complexity 1 83 0 2 662 191 328 90 0 chr4 10181993 10182060 -145448060 - MIRm SINE MIR -5 271 199 2 662 392 369 25 6 chr4 10182402 10182560 -145447560 - MIR SINE MIR -38 224 64 2 662 419 235 106 0 chr4 10182891 10183023 -145447097 - L1MA9 LINE L1 -5 6307 6162 2 662 480 146 0 0 chr4 10183034 10183137 -145446983 + (TC)n Simple_repeat Simple_repeat 1 103 0 2 662 338 0 24 0 chr4 10183137 10183179 -145446941 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 662 208 264 40 40 chr4 10183361 10183436 -145446684 + L2c LINE L2 3268 3342 -45 2 662 228 366 81 8 chr4 10185153 10185277 -145444843 + L2b LINE L2 3234 3366 -9 2 662 25 83 0 0 chr4 10185795 10185855 -145444265 + AT_rich Low_complexity Low_complexity 1 60 0 2 662 365 182 6 30 chr4 10185861 10185936 -145444184 - B3 SINE B2 -109 107 33 2 662 891 256 135 73 chr4 10185942 10186364 -145443756 + RMER13A LTR ERVK 14 461 -399 2 662 260 226 0 0 chr4 10186535 10186588 -145443532 - B3 SINE B2 -163 53 1 2 662 1076 314 7 18 chr4 10186628 10186910 -145443210 + B4A SINE B4 6 284 -8 2 662 657 25 0 0 chr4 10186925 10187004 -145443116 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 662 318 267 47 56 chr4 10187018 10187125 -145442995 + LTR81B LTR ERV1? 183 288 -1105 2 662 227 143 32 0 chr4 10187958 10188021 -145442099 + T-rich Low_complexity Low_complexity 6 70 0 2 662 255 79 0 0 chr4 10188881 10188919 -145441201 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 662 267 31 0 0 chr4 10189022 10189054 -145441066 + (CCCTG)n Simple_repeat Simple_repeat 1 32 0 2 662 318 333 48 0 chr4 10189248 10189353 -145440767 - MIRb SINE MIR -27 241 132 2 662 546 251 165 40 chr4 10189553 10189802 -145440318 - B4A SINE B4 -12 280 1 2 662 232 287 125 47 chr4 10191303 10191431 -145438689 + L2a LINE L2 3286 3423 -3 2 662 396 0 0 0 chr4 10191519 10191563 -145438557 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 662 710 346 58 18 chr4 10191568 10191845 -145438275 + B4A SINE B4 5 292 0 2 662 234 62 0 0 chr4 10191861 10191893 -145438227 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 662 347 312 111 0 chr4 10192399 10192543 -145437577 + L2a LINE L2 3267 3426 0 2 662 308 401 16 27 chr4 10192644 10192831 -145437289 + MIRb SINE MIR 26 210 -58 2 662 1008 244 137 20 chr4 10194381 10194884 -145435236 - L1MA9 LINE L1 -36 6276 5714 2 662 263 254 136 0 chr4 10195093 10195211 -145434909 + L1M2 LINE L1 5595 5728 -572 2 662 564 273 65 18 chr4 10195761 10196037 -145434083 + L1MC LINE L1 4013 4301 -1845 2 662 1966 204 22 7 chr4 10196043 10196452 -145433668 - MTC LTR MaLR 0 421 7 2 662 2016 133 3 3 chr4 10196455 10196765 -145433355 + ORR1A1 LTR MaLR 1 310 -36 2 662 910 129 116 0 chr4 10196778 10196933 -145433187 + ORR1A1-int LTR MaLR 1 173 -1790 2 662 256 283 44 0 chr4 10197088 10197201 -145432919 - Lx7 LINE L1 0 7696 7579 2 662 1749 189 95 31 chr4 10197418 10197838 -145432282 - Lx7 LINE L1 -556 7140 6694 2 662 229 164 60 0 chr4 10197838 10197905 -145432215 + L1MC LINE L1 4431 4501 -1645 2 662 24 77 0 0 chr4 10198607 10198659 -145431461 + AT_rich Low_complexity Low_complexity 1 52 0 2 662 1293 293 104 11 chr4 10198660 10199198 -145430922 + Lx8 LINE L1 6197 6784 -689 2 662 379 241 50 32 chr4 10199198 10199372 -145430748 + MTEb LTR MaLR 168 421 0 2 662 312 262 0 0 chr4 10199428 10199508 -145430612 + L1MC LINE L1 5492 5571 -762 2 662 26 30 0 0 chr4 10199514 10199547 -145430573 + AT_rich Low_complexity Low_complexity 1 33 0 2 662 334 278 30 8 chr4 10199694 10199828 -145430292 - L1MA9 LINE L1 -153 6159 6023 2 662 684 287 68 16 chr4 10199958 10200280 -145429840 - L1MA8 LINE L1 -254 6037 5699 2 662 411 73 0 0 chr4 10200322 10200377 -145429743 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 2 662 6966 64 17 6 chr4 10200379 10201954 -145428166 - L1Md_F2 LINE L1 -2 6580 4986 2 662 10776 59 3 5 chr4 10201953 10203430 -145426690 + L1Md_F2 LINE L1 3486 4960 -923 2 662 319 274 106 58 chr4 10203431 10203572 -145426548 - L1MA8 LINE L1 -648 5664 5508 2 662 2964 71 8 8 chr4 10203572 10203968 -145426152 - MTA_Mm LTR MaLR 0 396 1 2 662 319 274 106 58 chr4 10203968 10204101 -145426019 - L1MA8 LINE L1 -805 5507 5377 2 662 25 75 0 0 chr4 10204101 10204154 -145425966 + AT_rich Low_complexity Low_complexity 1 53 0 2 662 2147 167 28 25 chr4 10204172 10204565 -145425555 + ORR1B1 LTR MaLR 1 394 0 2 662 569 76 11 0 chr4 10204567 10204659 -145425461 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 2 662 284 216 69 41 chr4 10204700 10204845 -145425275 - L1MA8 LINE L1 -780 5360 5212 2 662 1023 133 0 0 chr4 10204880 10205045 -145425075 + (TTC)n Simple_repeat Simple_repeat 3 167 0 2 662 539 286 26 22 chr4 10205172 10205401 -145424719 - L1MA8 LINE L1 -2311 3829 3600 2 662 288 294 87 8 chr4 10205432 10205559 -145424561 + L1MC1 LINE L1 6121 6257 -76 2 662 633 273 77 9 chr4 10205684 10206024 -145424096 - L1M4 LINE L1 -762 5384 5022 2 662 2057 238 5 10 chr4 10206077 10206489 -145423631 + MTD LTR MaLR 1 410 -9 2 662 2207 267 152 66 chr4 10206495 10207557 -145422563 + MTD-int LTR MaLR 2 1154 -104 2 662 848 162 7 0 chr4 10207567 10207703 -145422417 - B1_Mur4 SINE Alu -7 143 7 2 662 452 281 28 39 chr4 10207703 10207881 -145422239 + MTD-int LTR MaLR 1083 1258 0 2 662 1587 240 83 3 chr4 10207883 10208222 -145421898 + MTD LTR MaLR 4 369 -50 2 662 273 330 0 0 chr4 10208225 10208328 -145421792 - L1M4 LINE L1 -1331 4815 4713 2 662 31 0 0 0 chr4 10208370 10208401 -145421719 + AT_rich Low_complexity Low_complexity 1 31 0 2 662 240 213 63 27 chr4 10208444 10208555 -145421565 - Lx9 LINE L1 -51 7593 7479 2 662 1783 314 54 39 chr4 10208555 10208623 -145421497 - Lx9 LINE L1 -121 7523 7454 2 662 360 59 0 0 chr4 10208623 10208674 -145421446 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 662 1783 314 54 39 chr4 10208674 10209085 -145421035 - Lx9 LINE L1 -191 7453 7046 2 662 450 0 0 0 chr4 10209085 10209135 -145420985 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 2 662 1783 314 54 39 chr4 10209135 10209578 -145420542 - Lx9 LINE L1 -599 7045 6586 2 662 813 281 0 0 chr4 10209602 10209780 -145420340 - B3A SINE B2 -19 179 2 2 662 455 351 134 5 chr4 10209784 10209970 -145420150 - ID_B1 SINE B4 -9 215 6 2 662 226 234 12 58 chr4 10210068 10210154 -145419966 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 2 662 351 275 176 40 chr4 10210314 10210564 -145419556 - Lx8 LINE L1 -138 7335 7052 2 662 479 258 166 35 chr4 10210702 10210949 -145419171 - Lx8 LINE L1 -466 7007 6729 2 662 324 120 0 0 chr4 10211245 10211295 -145418825 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 662 387 326 128 18 chr4 10211867 10212086 -145418034 - L1M4 LINE L1 -1971 4175 3933 2 662 234 292 0 40 chr4 10212157 10212257 -145417863 - L1M4 LINE L1 -2336 3810 3715 2 662 272 347 118 11 chr4 10212341 10212519 -145417601 + L3 LINE CR1 3472 3668 -821 2 662 491 271 90 0 chr4 10212524 10212646 -145417474 + ID_B1 SINE B4 91 223 -1 2 662 931 251 88 35 chr4 10212891 10213209 -145416911 + L3 LINE CR1 3942 4276 -213 2 662 570 29 0 0 chr4 10213470 10213538 -145416582 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 2 662 290 167 17 0 chr4 10213612 10213672 -145416448 + G-rich Low_complexity Low_complexity 4 64 0 2 662 25 31 0 0 chr4 10213828 10213860 -145416260 + AT_rich Low_complexity Low_complexity 1 32 0 2 662 306 323 140 0 chr4 10213861 10213954 -145416166 - RSINE1 SINE B4 -57 108 3 2 662 504 0 0 0 chr4 10213983 10214039 -145416081 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 662 719 183 0 6 chr4 10214335 10214516 -145415604 + GA-rich Low_complexity Low_complexity 1 180 0 2 662 374 285 35 97 chr4 10214576 10214720 -145415400 - MTEb LTR MaLR -244 135 1 2 662 2721 64 28 60 chr4 10216082 10216482 -145413638 + L1_Mus2 LINE L1 6180 6566 0 2 662 645 49 0 0 chr4 10216579 10216660 -145413460 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 2 662 543 31 0 0 chr4 10216660 10216725 -145413395 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 662 204 40 0 0 chr4 10216777 10216802 -145413318 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 2 662 282 125 0 0 chr4 10217930 10217970 -145412150 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 2 662 891 179 0 0 chr4 10217970 10218149 -145411971 + CT-rich Low_complexity Low_complexity 2 180 0 2 662 308 302 8 94 chr4 10218175 10218292 -145411828 - B3A SINE B2 -89 109 3 2 662 405 0 0 0 chr4 10219018 10219063 -145411057 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 662 360 0 0 0 chr4 10220275 10220315 -145409805 + (T)n Simple_repeat Simple_repeat 1 40 0 2 662 189 246 52 17 chr4 10221584 10221642 -145408478 - L2c LINE L2 -15 3372 3313 2 662 589 44 0 42 chr4 10223223 10223318 -145406802 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 2 82 336 161 0 0 chr4 10223604 10223666 -145406454 + CT-rich Low_complexity Low_complexity 4 65 0 2 663 417 39 0 0 chr4 10223666 10223717 -145406403 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 663 340 271 204 45 chr4 10224516 10224717 -145405403 + MIRb SINE MIR 3 235 -33 2 663 522 43 0 0 chr4 10225668 10225737 -145404383 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 2 663 543 310 31 56 chr4 10225994 10226189 -145403931 - B3A SINE B2 -8 190 1 2 663 347 308 0 0 chr4 10226199 10226290 -145403830 - MIR SINE MIR -69 193 103 2 663 538 326 15 15 chr4 10226370 10226566 -145403554 - MER3 DNA MER1_type -12 197 2 2 663 189 285 101 101 chr4 10226583 10226751 -145403369 - MIRb SINE MIR -100 168 1 2 663 953 48 0 0 chr4 10227568 10227693 -145402427 - L1_Mus1 LINE L1 0 6567 6443 2 663 872 308 16 92 chr4 10229291 10229580 -145400540 - B4 SINE B4 -2 290 22 2 663 3318 26 37 0 chr4 10229580 10229962 -145400158 - MTA_Mm LTR MaLR 0 396 1 2 663 8160 75 5 3 chr4 10229962 10231058 -145399062 - MTA_Mm-int LTR MaLR 0 1098 1 2 663 3447 25 2 2 chr4 10231058 10231454 -145398666 - MTA_Mm LTR MaLR 0 396 1 2 663 872 308 16 92 chr4 10231454 10231466 -145398654 - B4 SINE B4 -271 21 12 2 663 238 298 108 0 chr4 10231525 10231608 -145398512 - BC1_Mm scRNA scRNA -59 93 2 2 663 201 302 16 0 chr4 10232471 10232534 -145397586 - MIRb SINE MIR -79 189 126 2 663 417 20 0 0 chr4 10233138 10233188 -145396932 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 663 333 327 48 6 chr4 10233191 10233401 -145396719 + L1ME2 LINE L1 5805 6026 -136 2 663 1114 226 106 0 chr4 10235363 10235637 -145394483 - Lx6 LINE L1 -16 7444 7142 2 663 296 329 64 30 chr4 10236676 10236936 -145393184 + Lx8 LINE L1 7072 7463 -181 3 663 252 122 0 0 chr4 10236940 10236981 -145393139 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 663 4552 29 0 0 chr4 10237568 10238094 -145392026 + L1Md_T LINE L1 6055 6580 -2 3 663 242 0 61 0 chr4 10238234 10238267 -145391853 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 3 663 465 292 50 0 chr4 10240301 10240421 -145389699 - B1F SINE Alu -23 126 1 3 663 369 319 62 0 chr4 10240505 10240618 -145389502 + PB1D7 SINE Alu 1 120 0 3 663 670 292 0 14 chr4 10240646 10240792 -145389328 + B1F2 SINE Alu 6 149 0 3 663 492 18 0 0 chr4 10241106 10241163 -145388957 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 663 477 0 0 0 chr4 10241163 10241216 -145388904 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 663 593 203 36 72 chr4 10241264 10241402 -145388718 + RMER10B LTR ERVL 220 352 -46 3 663 3630 68 8 0 chr4 10242566 10243034 -145387086 + L1_Mus1 LINE L1 6096 6567 0 3 663 333 319 35 21 chr4 10243101 10243245 -145386875 + MIRb SINE MIR 116 261 -7 3 663 219 133 0 0 chr4 10243444 10243489 -145386631 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 3 663 418 266 29 94 chr4 10243960 10244028 -145386092 + MT2B LTR ERVL 99 155 -446 3 663 809 150 19 87 chr4 10244028 10244189 -145385931 + B1_Mur4 SINE Alu 1 150 0 3 663 180 246 0 0 chr4 10244651 10244720 -145385400 + T-rich Low_complexity Low_complexity 1 69 0 3 663 397 254 80 22 chr4 10244720 10244857 -145385263 - B1F2 SINE Alu 0 149 5 3 663 268 362 64 50 chr4 10245148 10245384 -145384736 - MIR SINE MIR -11 257 8 3 663 274 333 16 93 chr4 10245867 10245996 -145384124 + L2c LINE L2 3268 3386 -1 3 663 3815 199 57 74 chr4 10246646 10246865 -145383255 + RMER1B Other Other 60 265 -801 3 663 3057 25 3 0 chr4 10246865 10247218 -145382902 - IAPEY2_LTR LTR ERVK -3 354 1 3 663 3815 199 57 74 chr4 10247218 10248009 -145382111 + RMER1B Other Other 266 1053 -13 3 663 180 0 0 0 chr4 10248011 10248031 -145382089 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 663 25 51 0 0 chr4 10249858 10249897 -145380223 + AT_rich Low_complexity Low_complexity 1 39 0 3 663 742 229 124 5 chr4 10250171 10250364 -145379756 - B3 SINE B2 0 216 1 3 663 384 361 43 27 chr4 10250728 10250913 -145379207 - ORR1E LTR MaLR -171 188 1 3 663 29 28 0 0 chr4 10251155 10251191 -145378929 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 252 300 14 0 chr4 10251679 10251749 -145378371 + RSINE1 SINE B4 75 145 -20 3 663 369 0 0 0 chr4 10251752 10251793 -145378327 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 663 2870 159 45 21 chr4 10252071 10252382 -145377738 + RMER6C LTR ERVK 1 348 -372 3 663 240 111 0 0 chr4 10252382 10252418 -145377702 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 663 360 0 0 0 chr4 10252421 10252461 -145377659 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 663 2870 154 28 19 chr4 10252461 10252760 -145377360 + RMER6C LTR ERVK 344 646 -44 3 663 23 33 0 0 chr4 10253215 10253245 -145376875 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 793 194 194 0 chr4 10253246 10253426 -145376694 + B3 SINE B2 1 215 -1 3 663 1481 184 17 108 chr4 10254794 10255147 -145374973 - ORR1A4 LTR MaLR -8 321 1 3 663 563 270 140 6 chr4 10255572 10255751 -145374369 + B3 SINE B2 5 207 -9 3 663 432 0 0 0 chr4 10256396 10256444 -145373676 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 3 663 239 261 140 11 chr4 10257685 10257778 -145372342 - PB1D9 SINE Alu -8 112 8 3 663 195 69 0 0 chr4 10258094 10258123 -145371997 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 663 471 326 174 62 chr4 10258201 10259222 -145370898 + L1MDa LINE L1 1401 2536 -4082 3 663 254 353 86 64 chr4 10259630 10259957 -145370163 + ORR1C2 LTR MaLR 51 384 0 3 663 1995 76 0 10 chr4 10261357 10261648 -145368472 - L1_Mm LINE L1 -635 5248 4961 3 663 723 172 0 0 chr4 10261660 10261794 -145368326 + (TA)n Simple_repeat Simple_repeat 1 134 0 3 663 7257 73 6 15 chr4 10261795 10263135 -145366985 + L1_Mus2 LINE L1 5235 6566 0 3 663 383 234 103 35 chr4 10264050 10264191 -145365929 - MIRb SINE MIR -1 261 117 3 663 623 238 73 0 chr4 10265750 10265901 -145364219 - ORR1E LTR MaLR -197 162 1 3 663 913 288 151 11 chr4 10265901 10266236 -145363884 - ORR1E-int LTR MaLR -53 1527 1143 3 663 360 273 47 62 chr4 10266341 10266470 -145363650 + ORR1E LTR MaLR 84 210 -149 3 663 1408 305 110 27 chr4 10266474 10267000 -145363120 - ORR1E-int LTR MaLR -442 1138 569 3 663 918 238 41 82 chr4 10267196 10267439 -145362681 + ORR1E LTR MaLR 5 237 -122 3 663 405 0 0 0 chr4 10267693 10267738 -145362382 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 663 217 224 138 0 chr4 10268686 10268744 -145361376 - MIR SINE MIR -184 78 13 3 663 360 302 125 63 chr4 10269114 10269913 -145360207 - L1MEg LINE L1 -4401 1683 835 3 663 192 125 0 0 chr4 10270032 10270064 -145360056 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 663 25 31 0 0 chr4 10270135 10270167 -145359953 + AT_rich Low_complexity Low_complexity 1 32 0 3 663 379 218 265 10 chr4 10270177 10270279 -145359841 - B3 SINE B2 -86 130 3 3 663 228 335 222 36 chr4 10270863 10271030 -145359090 - MLT1L LTR MaLR -98 512 315 3 663 564 287 43 63 chr4 10272183 10272484 -145357636 + Charlie4a DNA MER1_type 17 311 -197 3 663 339 25 0 0 chr4 10272490 10272530 -145357590 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 663 324 234 127 35 chr4 10272695 10272837 -145357283 + Charlie4a DNA MER1_type 354 508 0 3 663 186 160 0 0 chr4 10273378 10273428 -145356692 + A-rich Low_complexity Low_complexity 1 50 0 3 663 930 249 0 28 chr4 10273911 10274122 -145355998 + B3 SINE B2 5 209 -7 3 663 3273 70 0 0 chr4 10274359 10274771 -145355349 + L1_Mus2 LINE L1 6155 6566 0 3 663 348 119 0 0 chr4 10276492 10276551 -145353569 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 663 6319 49 0 0 chr4 10276766 10277540 -145352580 - L1Md_F2 LINE L1 0 6582 5809 3 663 23 0 0 0 chr4 10278012 10278035 -145352085 + AT_rich Low_complexity Low_complexity 1 23 0 3 663 622 218 0 0 chr4 10278536 10278692 -145351428 + Lx9 LINE L1 7482 7637 -7 3 663 2786 22 22 0 chr4 10281384 10281704 -145348416 - IAPLTR2b LTR ERVK 0 327 1 3 663 22 0 0 0 chr4 10282196 10282218 -145347902 + AT_rich Low_complexity Low_complexity 1 22 0 3 663 4823 188 54 91 chr4 10282271 10283617 -145346503 + Lx9 LINE L1 6341 7636 -8 3 663 298 148 32 16 chr4 10283676 10283738 -145346382 + RMER15 LTR ERVL 412 474 -101 3 663 324 161 0 0 chr4 10283744 10283806 -145346314 + GA-rich Low_complexity Low_complexity 2 63 0 3 663 183 188 62 0 chr4 10283843 10283891 -145346229 + L3 LINE CR1 2776 2826 -1663 3 663 241 329 183 24 chr4 10284824 10285070 -145345050 + L2c LINE L2 3083 3367 -20 3 663 24 0 0 0 chr4 10285673 10285697 -145344423 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 464 343 7 21 chr4 10285839 10285982 -145344138 + RSINE1 SINE B4 3 143 -22 3 663 447 19 0 0 chr4 10286038 10286090 -145344030 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 663 863 104 51 0 chr4 10287554 10287888 -145342232 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 3 663 910 59 38 0 chr4 10287903 10288145 -145341975 + (TAGA)n Simple_repeat Simple_repeat 1 251 0 3 663 191 119 71 0 chr4 10288146 10288188 -145341932 + (ATATG)n Simple_repeat Simple_repeat 3 47 0 3 663 2183 177 10 68 chr4 10288193 10288606 -145341514 - ORR1B1 LTR MaLR 0 394 6 3 663 221 0 35 0 chr4 10288608 10288637 -145341483 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 3 663 269 160 0 0 chr4 10288640 10288690 -145341430 - ORR1B1 LTR MaLR -62 332 283 3 663 929 168 6 0 chr4 10288693 10288872 -145341248 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 663 297 352 46 37 chr4 10289452 10289670 -145340450 - ERVL-E-int LTR ERVL -2147 3338 3119 3 663 471 361 23 5 chr4 10289706 10289923 -145340197 - ERVL-E-int LTR ERVL -2669 2998 2778 3 663 1769 236 79 47 chr4 10289923 10290478 -145339642 - RMER20B LTR ERVK 0 627 55 3 663 783 311 14 27 chr4 10290499 10290589 -145339531 - ERVL-E-int LTR ERVL -2883 2784 2694 3 663 2852 19 0 0 chr4 10290589 10290911 -145339209 - RLTRETN_Mm LTR ERVK 0 322 1 3 663 783 311 14 27 chr4 10290911 10291117 -145339003 - ERVL-E-int LTR ERVL -2974 2693 2492 3 663 680 305 56 70 chr4 10291213 10291555 -145338565 - MLT1A0 LTR MaLR -22 343 7 3 663 339 288 84 5 chr4 10291582 10291765 -145338355 - ERVL-E-int LTR ERVL -3428 2239 2129 3 663 406 244 8 17 chr4 10292286 10292403 -145337717 + L1_Rod LINE L1 5731 5846 -1 3 663 1295 178 0 9 chr4 10292403 10292630 -145337490 + URR1B DNA MER1_type 1 225 0 3 663 213 39 0 0 chr4 10292931 10292957 -145337163 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 663 839 167 14 0 chr4 10292961 10293099 -145337021 - B1_Mur4 SINE Alu -6 144 5 3 663 1435 108 5 5 chr4 10293400 10293623 -145336497 + Lx4A LINE L1 4926 5148 -729 3 663 8571 136 34 11 chr4 10293623 10293924 -145336196 + Lx4A LINE L1 5592 5901 -1157 3 663 6156 110 31 8 chr4 10293924 10294857 -145335263 - RMER17B LTR ERVK -3 955 1 3 663 8571 136 34 11 chr4 10294857 10295987 -145334133 + Lx4A LINE L1 5902 7056 -2 3 663 650 286 68 26 chr4 10296433 10296623 -145333497 + B3 SINE B2 13 210 -6 3 663 1146 228 104 35 chr4 10296813 10297159 -145332961 + ORR1D2 LTR MaLR 1 370 0 3 663 206 184 39 13 chr4 10298121 10298198 -145331922 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 663 3501 15 5 0 chr4 10298199 10298593 -145331527 - MTA_Mm LTR MaLR 0 396 1 3 663 9501 20 2 0 chr4 10298593 10299689 -145330431 - MTA_Mm-int LTR MaLR 0 1098 1 3 663 3460 18 5 0 chr4 10299689 10300083 -145330037 - MTA_Mm LTR MaLR 0 396 1 3 663 312 91 0 0 chr4 10300185 10300229 -145329891 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 663 9457 136 184 7 chr4 10300305 10303333 -145326787 - L1_Mus3 LINE L1 -2 6636 3028 3 663 681 333 37 34 chr4 10303338 10303633 -145326487 - RMER1A Other Other -601 429 134 3 663 14665 19 0 0 chr4 10303914 10305692 -145324428 + L1Md_T LINE L1 3809 5586 -297 3 663 8200 48 0 0 chr4 10305692 10306687 -145323433 + L1Md_T LINE L1 5587 6581 -1 3 663 441 0 0 0 chr4 10306794 10306843 -145323277 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 663 477 0 0 0 chr4 10306843 10306895 -145323225 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 663 24 0 0 0 chr4 10307113 10307137 -145322983 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 558 214 0 0 chr4 10307916 10308056 -145322064 + (CA)n Simple_repeat Simple_repeat 2 141 0 4 663 404 127 38 29 chr4 10308370 10308475 -145321645 + CT-rich Low_complexity Low_complexity 3 108 0 4 663 475 231 156 34 chr4 10308605 10308784 -145321336 + MLT1C LTR MaLR 267 467 0 4 663 221 121 0 0 chr4 10308822 10308855 -145321265 - MER5B DNA MER1_type -68 110 78 4 663 506 292 12 38 chr4 10309768 10309785 -145320335 + ID_B1 SINE B4 64 219 -5 4 663 696 238 7 0 chr4 10309785 10309928 -145320192 + B1_Mur1 SINE Alu 1 144 -5 4 663 472 240 125 0 chr4 10310262 10310366 -145319754 + B3 SINE B2 1 117 -99 4 663 274 382 0 8 chr4 10310417 10310541 -145319579 - L2a LINE L2 -258 3168 3046 4 663 932 164 0 6 chr4 10310875 10311053 -145319067 + GA-rich Low_complexity Low_complexity 1 177 0 4 663 1066 180 101 14 chr4 10311116 10311403 -145318717 + Lx7 LINE L1 7385 7696 0 4 663 21 36 0 0 chr4 10311403 10311431 -145318689 + AT_rich Low_complexity Low_complexity 1 28 0 4 663 373 409 73 18 chr4 10311617 10311836 -145318284 - MLT1G3 LTR MaLR -12 567 337 4 663 380 326 129 21 chr4 10311848 10312089 -145318031 - MLT1G3 LTR MaLR -316 279 13 4 663 556 328 62 34 chr4 10312675 10312852 -145317268 - B3A SINE B2 -16 182 1 4 663 2625 194 38 7 chr4 10314404 10314985 -145315135 + RLTR18-int LTR ERVK 4720 5318 -43 4 663 906 263 42 53 chr4 10315007 10315292 -145314828 + RLTR18 LTR ERVK 1 282 -334 4 663 1136 256 41 34 chr4 10315333 10315669 -145314451 + RLTR18B LTR ERVK 182 506 -6 4 663 225 65 0 0 chr4 10315696 10315727 -145314393 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 663 558 0 0 0 chr4 10315827 10315889 -145314231 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 663 6227 78 43 2 chr4 10316114 10317016 -145313104 + L1_Mus3 LINE L1 5694 6632 -6 4 663 336 24 0 0 chr4 10317919 10317960 -145312160 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 663 468 0 0 0 chr4 10317960 10318011 -145312109 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 663 2462 267 71 26 chr4 10319265 10320041 -145310079 + Lx8 LINE L1 6301 7111 -362 4 663 246 149 85 0 chr4 10320242 10320289 -145309831 - RMER15 LTR ERVL -524 51 1 4 663 324 290 27 43 chr4 10320371 10320525 -145309595 + MTEa LTR MaLR 219 379 0 4 663 1235 302 138 15 chr4 10320525 10321005 -145309115 + MTEa-int LTR MaLR 1 539 -1041 4 663 2197 148 63 6 chr4 10321094 10321460 -145308660 + ORR1B1 LTR MaLR 8 394 0 4 663 1990 343 51 35 chr4 10321468 10321861 -145308259 + MTEa-int LTR MaLR 637 1037 -543 4 663 1994 127 107 34 chr4 10321861 10322067 -145308053 + RMER17C LTR ERVK 1 225 -185 4 663 825 40 0 0 chr4 10322067 10322168 -145307952 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 663 1994 127 107 34 chr4 10322168 10322343 -145307777 + RMER17C LTR ERVK 226 409 -1 4 663 1990 343 51 35 chr4 10322343 10322732 -145307388 + MTEa-int LTR MaLR 1038 1432 -148 4 663 3126 147 14 47 chr4 10322736 10323316 -145306804 + RLTR31_Mm LTR ERVK 1 561 0 4 663 485 331 73 70 chr4 10323403 10323689 -145306431 + ORR1E LTR MaLR 68 354 -5 4 663 22 35 0 0 chr4 10324032 10324061 -145306059 + AT_rich Low_complexity Low_complexity 1 29 0 4 663 695 320 50 0 chr4 10325886 10326086 -145304034 - B4 SINE B4 -2 290 81 4 663 360 0 0 0 chr4 10326113 10326153 -145303967 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 4 663 240 238 79 129 chr4 10327954 10328094 -145302026 + RMER21B LTR ERV1 564 696 -146 4 663 282 271 14 157 chr4 10328479 10328619 -145301501 - L2a LINE L2 -18 3408 3289 4 663 259 283 82 16 chr4 10328705 10328827 -145301293 - MER58A DNA MER1_type -86 138 9 4 663 203 146 24 0 chr4 10328862 10328903 -145301217 + GA-rich Low_complexity Low_complexity 2 43 0 4 663 303 344 25 35 chr4 10329106 10329233 -145300887 + PB1D10 SINE Alu 5 129 -20 4 663 420 293 72 81 chr4 10329306 10329529 -145300591 + MER58A DNA MER1_type 4 224 0 4 663 198 71 0 0 chr4 10329842 10329870 -145300250 + (CACAA)n Simple_repeat Simple_repeat 2 29 0 4 663 180 0 0 0 chr4 10331049 10331069 -145299051 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 663 789 103 0 0 chr4 10331145 10331262 -145298858 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 4 663 28 29 0 0 chr4 10331349 10331384 -145298736 + AT_rich Low_complexity Low_complexity 1 35 0 4 663 413 36 18 0 chr4 10331444 10331499 -145298621 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 663 937 311 54 8 chr4 10332255 10332514 -145297606 + B4 SINE B4 2 272 -20 4 663 432 286 84 63 chr4 10333535 10333774 -145296346 + L1MB5 LINE L1 5931 6174 0 4 663 875 259 67 0 chr4 10334106 10334299 -145295821 - B3 SINE B2 -7 209 4 4 663 576 70 0 0 chr4 10334337 10334423 -145295697 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 663 23 33 0 0 chr4 10334574 10334604 -145295516 + AT_rich Low_complexity Low_complexity 1 30 0 4 663 628 314 24 38 chr4 10335404 10335616 -145294504 + B4 SINE B4 1 209 -83 4 663 303 146 0 0 chr4 10335737 10335792 -145294328 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 663 341 373 0 14 chr4 10335792 10335936 -145294184 + MIRb SINE MIR 51 192 -76 4 663 190 194 0 27 chr4 10336285 10336322 -145293798 + MIR3 SINE MIR 119 154 -54 4 663 1464 295 56 8 chr4 10336643 10337128 -145292992 + Lx8 LINE L1 6768 7275 -198 4 663 633 268 16 42 chr4 10337693 10337884 -145292236 - MTE2b LTR MaLR -165 214 29 4 663 423 208 52 0 chr4 10337853 10337930 -145292190 - MTE2b LTR MaLR -296 83 3 4 663 444 261 11 0 chr4 10337930 10338020 -145292100 + B1F1 SINE Alu 10 100 -49 4 663 424 247 10 58 chr4 10338020 10338031 -145292089 + ID_B1 SINE B4 89 186 -38 4 663 3964 72 0 15 chr4 10338975 10339396 -145290724 - L1_Mus1 LINE L1 0 6567 6153 4 663 2370 66 59 3 chr4 10339396 10339699 -145290421 + RLTR46 LTR ERVK 1 320 0 4 663 3964 72 0 15 chr4 10339699 10339758 -145290362 - L1_Mus1 LINE L1 -415 6152 6094 4 663 1465 205 154 14 chr4 10339829 10340185 -145289935 + MTD LTR MaLR 6 411 -8 4 663 578 309 134 66 chr4 10340352 10340778 -145289342 - MLT2B5 LTR ERVL -117 600 146 4 663 522 282 48 30 chr4 10340629 10340797 -145289323 - MTEa LTR MaLR -204 175 5 4 663 337 128 0 0 chr4 10341013 10341060 -145289060 - HAL1-3A_ME LINE L1 -836 2022 1976 4 663 188 139 26 53 chr4 10341060 10341136 -145288984 + (TCTG)n Simple_repeat Simple_repeat 4 77 0 4 663 924 244 6 16 chr4 10341144 10341170 -145288950 - B3A SINE B2 -17 181 156 4 663 378 0 0 0 chr4 10341170 10341212 -145288908 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 663 924 244 6 16 chr4 10341212 10341368 -145288752 - B3A SINE B2 -43 155 2 4 663 1318 249 179 39 chr4 10341585 10342350 -145287770 + L1M4b LINE L1 1388 2379 -4723 4 663 1259 59 0 76 chr4 10342608 10342792 -145287328 - L1_Mus1 LINE L1 0 6567 6398 4 663 5402 90 35 47 chr4 10342861 10343687 -145286433 + L1VL2 LINE L1 308 1101 -2514 4 663 8038 56 26 24 chr4 10343687 10344681 -145285439 + L1Md_F2 LINE L1 5587 6582 0 4 663 5402 89 47 55 chr4 10344681 10345396 -145284724 + L1VL2 LINE L1 1102 1826 -1789 4 663 333 275 0 32 chr4 10345534 10345628 -145284492 - PB1D10 SINE Alu 0 117 27 4 663 23 33 0 0 chr4 10345773 10345803 -145284317 + AT_rich Low_complexity Low_complexity 1 30 0 4 663 31 0 0 0 chr4 10346459 10346490 -145283630 + AT_rich Low_complexity Low_complexity 1 31 0 4 663 235 217 121 0 chr4 10346609 10346692 -145283428 + L1M2 LINE L1 2745 2837 -3306 4 663 323 263 71 20 chr4 10346922 10347120 -145283000 + L1M4b LINE L1 2981 3188 -3818 4 663 302 242 106 32 chr4 10347305 10347515 -145282605 + L1M4b LINE L1 3504 3741 -3265 4 663 3505 128 24 8 chr4 10347520 10348024 -145282096 - Lx4A LINE L1 0 7058 6547 4 663 232 290 146 31 chr4 10351670 10351766 -145278354 - MLT1E2 LTR MaLR -452 175 69 4 663 1307 272 5 14 chr4 10351769 10352138 -145277982 - L1M2 LINE L1 -1259 4884 4519 4 663 180 200 0 0 chr4 10352210 10352250 -145277870 + GA-rich Low_complexity Low_complexity 3 42 0 4 663 216 211 0 37 chr4 10353037 10353091 -145277029 + GA-rich Low_complexity Low_complexity 4 55 0 4 663 356 301 69 14 chr4 10353343 10353488 -145276632 + MamGypLTR2c LTR Gypsy 5 157 -911 4 664 734 153 140 0 chr4 10355043 10355200 -145274920 + RLTR47_MM LTR ERV1 354 532 0 4 664 432 295 93 79 chr4 10355631 10355984 -145274136 + MMERGLN-int LTR ERV1 338 762 -6794 4 664 3053 9 0 0 chr4 10356025 10356347 -145273773 + RLTRETN_Mm LTR ERVK 1 322 0 4 664 42661 20 3 5 chr4 10356347 10361200 -145268920 + MMETn-int LTR ERVK 1 4844 0 4 664 3040 12 0 0 chr4 10361200 10361522 -145268598 + RLTRETN_Mm LTR ERVK 1 322 0 4 664 1418 306 85 77 chr4 10361678 10363071 -145267049 + MMERGLN-int LTR ERV1 1022 2426 -5130 4 664 2141 292 60 61 chr4 10363149 10364467 -145265653 + MuRRS4-int LTR ERV1 2929 5308 -2298 4 664 278 318 77 31 chr4 10365197 10365392 -145264728 + MURVY-int LTR ERV1 7140 7343 -109 4 664 273 145 0 0 chr4 10365398 10365460 -145264660 + (T)n Simple_repeat Simple_repeat 1 62 0 4 664 2268 81 152 0 chr4 10367139 10367521 -145262599 + RLTR47_MM LTR ERV1 1 440 -92 4 664 839 234 132 4 chr4 10367727 10367954 -145262166 + RMER1C Other Other 1069 1324 -18 4 664 389 188 29 59 chr4 10367984 10368086 -145262034 - RLTR11A LTR ERVK 0 528 430 4 664 21 0 0 0 chr4 10368089 10368110 -145262010 + AT_rich Low_complexity Low_complexity 1 21 0 4 664 539 323 24 30 chr4 10368214 10368380 -145261740 + RSINE1 SINE B4 1 165 0 4 664 591 92 0 0 chr4 10368380 10368467 -145261653 + (GA)n Simple_repeat Simple_repeat 1 87 0 4 664 22 35 0 0 chr4 10368627 10368656 -145261464 + AT_rich Low_complexity Low_complexity 1 29 0 4 664 291 284 104 44 chr4 10368664 10368914 -145261206 + L1MD LINE L1 4767 5031 -1115 4 664 238 427 48 48 chr4 10369027 10369236 -145260884 + MLT1J2 LTR MaLR 100 308 -140 4 664 332 321 179 39 chr4 10369291 10369570 -145260550 + L1ME3B LINE L1 5357 5674 -566 4 664 298 324 103 0 chr4 10369645 10369849 -145260271 + L1ME3B LINE L1 5818 6042 -198 4 664 233 160 20 20 chr4 10369930 10369981 -145260139 + (TATG)n Simple_repeat Simple_repeat 3 53 0 4 664 570 271 113 7 chr4 10370019 10370160 -145259960 + RSINE1 SINE B4 3 158 -7 4 664 396 0 0 0 chr4 10370160 10370204 -145259916 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 664 2974 64 8 28 chr4 10370204 10370591 -145259529 + L1Md_F2 LINE L1 6204 6582 0 4 664 797 303 69 4 chr4 10371143 10371418 -145258702 + MTE2b LTR MaLR 1 293 -86 4 664 8736 22 0 3 chr4 10371418 10372421 -145257699 - L1Md_A LINE L1 -199 5684 4685 4 664 8086 31 0 0 chr4 10372422 10373314 -145256806 + L1Md_A LINE L1 5691 6582 0 4 664 275 221 29 14 chr4 10373316 10373385 -145256735 + MTE2b LTR MaLR 319 388 -31 4 664 207 213 0 21 chr4 10373467 10373515 -145256605 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 5 664 2534 140 5 26 chr4 10373827 10374245 -145255875 - RLTR9E LTR ERVK 0 409 1 5 664 426 234 43 21 chr4 10374336 10374476 -145255644 - RMER1C Other Other 0 1342 1200 5 664 4962 115 24 1 chr4 10374462 10375866 -145254254 + L1Md_F LINE L1 422 1858 -4025 5 664 4186 56 92 6 chr4 10375866 10376385 -145253735 - LTRIS2 LTR ERV1 0 564 1 5 664 1031 219 26 0 chr4 10376386 10376614 -145253506 - RLTR1B-int LTR ERV1 -42 5021 4788 5 664 1413 290 108 17 chr4 10376605 10377125 -145252995 - RLTR1B-int LTR ERV1 -792 4271 3705 5 664 5666 113 104 18 chr4 10377112 10379281 -145250839 - RLTR1B-int LTR ERV1 -744 2555 760 5 664 4458 141 48 20 chr4 10379272 10380023 -145250097 - RMER16-int LTR ERVK -3962 1444 673 5 664 970 128 66 18 chr4 10380019 10380186 -145249934 - RMER16-int LTR ERVK -5091 315 141 5 664 1088 111 0 71 chr4 10380533 10380772 -145249348 - RLTR1B-int LTR ERV1 -3006 293 114 5 664 268 225 25 75 chr4 10380870 10380990 -145249130 - RLTR1B-int LTR ERV1 -3584 114 1 5 664 4167 52 92 13 chr4 10380990 10381513 -145248607 - LTRIS2 LTR ERV1 0 564 1 5 664 12815 139 78 7 chr4 10381513 10384778 -145245342 + L1Md_F2 LINE L1 1858 5586 -297 5 664 8227 59 7 3 chr4 10384778 10385770 -145244350 + L1Md_F2 LINE L1 5587 6582 0 5 664 291 28 0 0 chr4 10386669 10386705 -145243415 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 664 216 0 0 0 chr4 10386705 10386728 -145243392 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 664 414 0 0 0 chr4 10386728 10386773 -145243347 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 664 21 0 0 0 chr4 10388489 10388510 -145241610 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 1302 102 27 0 chr4 10389887 10390073 -145240047 - B2_Mm1t SINE B2 -2 191 1 5 664 1765 69 33 0 chr4 10390157 10390402 -145239718 - L1_Mus3 LINE L1 0 6638 6386 5 664 271 311 48 22 chr4 10390664 10390802 -145239318 + L2a LINE L2 3222 3409 -17 5 664 1157 106 0 6 chr4 10390817 10390998 -145239122 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 664 2036 224 19 27 chr4 10391348 10391829 -145238291 - Lx5 LINE L1 -9 7041 6565 5 664 652 289 36 9 chr4 10391939 10392159 -145237961 - Lx7 LINE L1 -344 7352 7127 5 664 384 77 0 0 chr4 10392189 10392241 -145237879 + (T)n Simple_repeat Simple_repeat 1 52 0 5 664 735 253 51 20 chr4 10392241 10392495 -145237625 - Lx7 LINE L1 -602 7094 6833 5 664 541 297 16 5 chr4 10392487 10392680 -145237440 - Lx7 LINE L1 -787 6909 6715 5 664 24 0 0 0 chr4 10392864 10392888 -145237232 + AT_rich Low_complexity Low_complexity 1 24 0 5 664 238 401 99 0 chr4 10392966 10393108 -145237012 - MIRc SINE MIR -63 205 50 5 664 559 283 223 16 chr4 10393181 10393499 -145236621 - Lx9 LINE L1 -172 7472 7089 5 664 791 244 0 11 chr4 10393509 10393687 -145236433 + Lx9 LINE L1 6680 6855 -789 5 664 489 214 38 19 chr4 10393687 10393792 -145236328 + B1_Mur3 SINE Alu 43 149 0 5 664 28 29 0 0 chr4 10393792 10393827 -145236293 + AT_rich Low_complexity Low_complexity 1 35 0 5 664 1286 68 11 0 chr4 10393858 10394035 -145236085 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 664 188 185 0 18 chr4 10394038 10394093 -145236027 + GA-rich Low_complexity Low_complexity 3 56 0 5 664 600 283 190 9 chr4 10394224 10394445 -145235675 - ORR1E LTR MaLR -10 349 89 5 664 249 109 0 0 chr4 10394598 10394644 -145235476 + (A)n Simple_repeat Simple_repeat 1 46 0 5 664 558 299 144 31 chr4 10394793 10395210 -145234910 + Lx8 LINE L1 7004 7467 -6 5 664 21 0 0 0 chr4 10395363 10395384 -145234736 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 566 299 48 58 chr4 10397084 10397379 -145232741 + B4A SINE B4 1 292 0 5 664 768 42 0 0 chr4 10397480 10397576 -145232544 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 5 664 1811 93 62 56 chr4 10397611 10397931 -145232189 - Lx LINE L1 0 6654 6333 5 664 1180 123 0 19 chr4 10397937 10398145 -145231975 - L1_Mur2 LINE L1 -2004 3873 3670 5 664 5831 131 44 11 chr4 10398371 10399333 -145230787 - Lx2 LINE L1 -7 6990 5998 5 664 34497 72 9 5 chr4 10399333 10405579 -145224541 - L1Md_F2 LINE L1 -2 6580 307 5 664 2454 105 41 5 chr4 10405580 10405974 -145224146 - Lx2 LINE L1 -986 6011 5604 5 664 2998 143 15 15 chr4 10405957 10406504 -145223616 + L1_Mur2 LINE L1 3768 4314 -1563 5 664 239 297 0 59 chr4 10406600 10406668 -145223452 + MLT1I LTR MaLR 37 100 -311 5 664 1063 64 35 0 chr4 10406867 10407008 -145223112 + B1_Mus2 SINE Alu 2 147 0 5 664 198 0 0 0 chr4 10407008 10407030 -145223090 + (A)n Simple_repeat Simple_repeat 1 22 0 5 664 234 207 191 22 chr4 10407241 10407330 -145222790 - MLT1N2 LTR MaLR 0 562 459 5 664 630 307 48 52 chr4 10408099 10408189 -145221931 + B4A SINE B4 25 107 -185 5 664 2135 105 95 44 chr4 10408189 10408578 -145221542 + RLTR9E LTR ERVK 1 409 0 5 664 630 307 48 52 chr4 10408578 10408738 -145221382 + B4A SINE B4 108 273 -19 5 664 237 65 0 0 chr4 10409077 10409108 -145221012 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 5 664 226 255 34 68 chr4 10409237 10409296 -145220824 + RSINE1 SINE B4 3 59 -106 5 664 21 36 0 0 chr4 10409296 10409324 -145220796 + AT_rich Low_complexity Low_complexity 1 28 0 5 664 266 234 30 60 chr4 10409326 10409426 -145220694 - L1MB7 LINE L1 -16 7022 6926 5 664 3621 197 75 11 chr4 10409437 10410307 -145219813 + Lx3C LINE L1 6050 6974 -2 5 664 1063 237 116 8 chr4 10410383 10410651 -145219469 - MTEb LTR MaLR -82 297 1 5 664 788 290 58 109 chr4 10410660 10411020 -145219100 - L1MB7 LINE L1 -177 6867 6529 5 664 1537 57 0 15 chr4 10411020 10411215 -145218905 - B2_Mm1t SINE B2 -1 192 1 5 664 788 290 58 109 chr4 10411215 10411624 -145218496 - L1MB7 LINE L1 -516 6528 6137 5 664 407 211 53 0 chr4 10411744 10411820 -145218300 + RLTR20B1 LTR ERVK 49 128 -450 5 664 929 278 39 15 chr4 10411819 10412078 -145218042 + RLTR20B1 LTR ERVK 298 562 -1 5 664 4855 47 0 5 chr4 10412179 10412761 -145217359 + L1Md_F2 LINE L1 5990 6568 -14 5 664 28 48 0 0 chr4 10412827 10412869 -145217251 + AT_rich Low_complexity Low_complexity 1 42 0 5 664 3094 218 29 29 chr4 10412920 10413227 -145216893 - Lx9 LINE L1 -151 7493 7199 5 664 1224 54 0 0 chr4 10413227 10413375 -145216745 - B1_Mus1 SINE Alu 0 148 1 5 664 3094 218 29 29 chr4 10413375 10413635 -145216485 - Lx9 LINE L1 -446 7198 6932 5 664 1206 193 14 0 chr4 10413635 10413858 -145216262 + URR1A DNA MER1_type 1 226 0 5 664 3094 218 29 29 chr4 10413858 10414044 -145216076 - Lx9 LINE L1 -713 6931 6739 5 664 3116 34 0 68 chr4 10414048 10414463 -145215657 - RLTR10 LTR ERVK -3 387 1 5 664 16171 21 9 13 chr4 10414465 10416456 -145213664 - RLTR10-int LTR ERVK -3 1984 1 5 664 2760 28 5 43 chr4 10416461 10416832 -145213288 - RLTR10 LTR ERVK -10 357 1 5 664 274 264 42 66 chr4 10416851 10417017 -145213103 - L1MB7 LINE L1 -3651 3683 3522 5 664 910 244 25 14 chr4 10417066 10417372 -145212748 + Lx5 LINE L1 6733 7051 -7 5 664 1926 156 32 47 chr4 10417392 10417705 -145212415 + ORR1B1 LTR MaLR 13 332 -62 5 664 1166 82 0 0 chr4 10417705 10417851 -145212269 - B1_Mm SINE Alu 0 147 2 5 664 1926 156 32 47 chr4 10417851 10417879 -145212241 + ORR1B1 LTR MaLR 333 349 -45 5 664 2545 144 40 15 chr4 10417974 10418254 -145211866 + L1VL4 LINE L1 499 791 -5511 5 664 2371 122 14 50 chr4 10418254 10418678 -145211442 - RLTR9E LTR ERVK 0 409 1 5 664 2545 149 31 6 chr4 10418678 10419139 -145210981 + L1VL4 LINE L1 792 1256 -2303 5 664 33898 51 0 3 chr4 10419136 10424788 -145205332 + L1Md_T LINE L1 1 5589 -297 5 664 8383 32 4 0 chr4 10424788 10425780 -145204340 + L1Md_T LINE L1 5590 6585 0 5 664 8699 128 19 20 chr4 10425788 10427400 -145202720 + L1VL4 LINE L1 1241 2850 -709 5 664 438 374 57 27 chr4 10427410 10427778 -145202342 - L1M4b LINE L1 -6790 544 166 5 664 1196 130 5 5 chr4 10427803 10427988 -145202132 - B2_Mm2 SINE B2 -9 186 2 5 664 11209 88 31 6 chr4 10429011 10429707 -145200413 - L1_Mus2 LINE L1 0 6566 5849 5 664 2978 69 10 2 chr4 10429707 10430100 -145200020 - MTA_Mm LTR MaLR 0 396 1 5 664 11209 107 11 27 chr4 10430100 10431897 -145198223 - L1_Mus2 LINE L1 -35 5848 4075 5 664 392 200 0 13 chr4 10431920 10431996 -145198124 + ID4 SINE ID 3 77 -6 5 664 39 0 0 0 chr4 10432001 10432040 -145198080 + AT_rich Low_complexity Low_complexity 1 39 0 5 664 31 0 0 0 chr4 10432131 10432162 -145197958 + AT_rich Low_complexity Low_complexity 1 31 0 5 664 838 311 102 23 chr4 10432266 10432998 -145197122 + L1MA9 LINE L1 5490 6279 -33 5 664 353 364 59 0 chr4 10433445 10433632 -145196488 + MER5C DNA MER1_type 109 306 -7 5 664 760 337 62 73 chr4 10433747 10434171 -145195949 - MLT1E3 LTR MaLR 0 627 192 5 664 879 313 53 90 chr4 10435804 10436317 -145193803 - LTR53 LTR ERVL -11 508 15 5 664 566 63 13 0 chr4 10436969 10437048 -145193072 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 664 636 254 30 61 chr4 10437781 10437978 -145192142 + B3A SINE B2 3 193 -5 5 664 411 243 77 10 chr4 10438370 10438474 -145191646 + PB1D10 SINE Alu 2 112 -5 5 664 219 36 0 0 chr4 10438659 10438687 -145191433 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 664 390 304 31 16 chr4 10439445 10439572 -145190548 + MLT1E3 LTR MaLR 481 609 -15 5 664 202 29 28 28 chr4 10441080 10441116 -145189004 + (TTG)n Simple_repeat Simple_repeat 3 38 0 5 664 277 304 78 48 chr4 10442171 10442232 -145187888 - MamGypLTR2b LTR Gypsy 0 922 863 5 664 297 0 0 0 chr4 10442232 10442265 -145187855 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 664 277 304 78 48 chr4 10442265 10442369 -145187751 - MamGypLTR2b LTR Gypsy -60 862 752 5 664 21 0 0 0 chr4 10443581 10443602 -145186518 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 601 287 25 77 chr4 10443711 10443829 -145186291 + MTE2b LTR MaLR 1 115 -264 5 664 1525 164 174 9 chr4 10443829 10444150 -145185970 + ORR1C1 LTR MaLR 5 378 0 5 664 601 287 25 77 chr4 10444150 10444227 -145185893 + MTE2b LTR MaLR 116 186 -193 5 664 639 136 0 0 chr4 10444298 10444408 -145185712 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 5 664 314 258 0 0 chr4 10444410 10444476 -145185644 + MTE2b LTR MaLR 314 379 0 5 664 586 251 78 8 chr4 10444643 10444830 -145185290 - L1M2 LINE L1 -482 5809 5547 5 664 473 279 90 4 chr4 10444839 10445084 -145185036 - L1M2 LINE L1 -946 5197 4932 5 664 606 311 27 0 chr4 10445157 10445305 -145184815 + RSINE1 SINE B4 2 153 -12 5 664 285 75 0 0 chr4 10445307 10445347 -145184773 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 664 861 149 0 0 chr4 10445347 10445522 -145184598 + (GA)n Simple_repeat Simple_repeat 1 175 0 5 664 243 154 0 0 chr4 10445522 10445561 -145184559 + GA-rich Low_complexity Low_complexity 3 41 0 5 664 504 216 66 38 chr4 10445581 10445764 -145184356 - L1M2 LINE L1 -1288 4855 4668 5 664 447 106 0 0 chr4 10445862 10445928 -145184192 + (T)n Simple_repeat Simple_repeat 1 66 0 5 664 660 103 0 60 chr4 10445938 10446072 -145184048 - L1_Mus4 LINE L1 0 6636 6511 5 664 24529 134 49 3 chr4 10446072 10451004 -145179116 - L1VL2 LINE L1 -31 5852 689 5 664 318 155 14 0 chr4 10451001 10451072 -145179048 - L1_Mm LINE L1 -585 5298 5227 5 664 2965 171 3 53 chr4 10451059 10451705 -145178415 + L1_Mm LINE L1 4621 5234 -649 5 664 20772 137 25 14 chr4 10451702 10454266 -145175854 - L1_Mur1 LINE L1 -770 5116 2519 5 664 2921 153 19 47 chr4 10454266 10454843 -145175277 + RLTR31_Mm LTR ERVK 1 561 0 5 664 20772 129 19 13 chr4 10454843 10456425 -145173695 - L1_Mur1 LINE L1 -3368 2518 929 5 664 835 138 74 19 chr4 10456810 10456972 -145173148 + Lx3_Mus LINE L1 6831 7001 -8 5 664 207 0 0 0 chr4 10457771 10457794 -145172326 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 664 1214 48 0 0 chr4 10457807 10457952 -145172168 - B1_Mm SINE Alu -1 146 2 6 664 1760 309 65 21 chr4 10458188 10459485 -145170635 - L1M2 LINE L1 -2131 4012 2659 5 664 417 20 0 0 chr4 10459995 10460045 -145170075 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 6 664 390 200 20 82 chr4 10460052 10460150 -145169970 + MTD LTR MaLR 23 114 -305 6 664 1043 120 10 52 chr4 10460620 10460814 -145169306 + L1_Mus3 LINE L1 6453 6638 0 6 664 1021 113 213 11 chr4 10461888 10462076 -145168044 + URR1A DNA MER1_type 1 226 0 6 664 420 37 0 0 chr4 10464083 10464137 -145165983 + (TATG)n Simple_repeat Simple_repeat 1 54 0 6 664 512 333 0 0 chr4 10464175 10464289 -145165831 + RSINE1 SINE B4 48 161 -4 6 664 441 0 0 0 chr4 10464842 10464891 -145165229 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 664 2262 286 144 17 chr4 10465188 10467119 -145163001 + Lx3C LINE L1 3703 5899 -1077 6 664 819 21 0 0 chr4 10467133 10467230 -145162890 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 664 1544 186 105 31 chr4 10467251 10467640 -145162480 - MTD LTR MaLR -1 418 1 6 664 4317 89 8 30 chr4 10467950 10468588 -145161532 - L1Md_F2 LINE L1 0 6582 5959 6 664 272 322 0 55 chr4 10470302 10470430 -145159690 - L2c LINE L2 -145 3242 3122 6 664 309 315 28 9 chr4 10471371 10471480 -145158640 - PB1D7 SINE Alu -9 111 1 6 664 7359 59 0 10 chr4 10471654 10472640 -145157480 - L1Md_F2 LINE L1 0 6582 5607 6 664 398 306 86 5 chr4 10472743 10472930 -145157190 + Lx8 LINE L1 6442 6643 -830 6 664 1543 261 33 2 chr4 10473028 10473450 -145156670 + Lx8 LINE L1 6592 7026 -447 6 664 399 319 128 70 chr4 10473892 10474535 -145155585 - L1M5 LINE L1 -1366 4780 4101 6 664 651 328 113 44 chr4 10474633 10475294 -145154826 - L1M5 LINE L1 -2060 4086 3380 6 664 21 0 0 0 chr4 10475634 10475655 -145154465 + AT_rich Low_complexity Low_complexity 1 21 0 6 664 458 46 15 0 chr4 10475667 10475732 -145154388 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 6 664 723 322 78 7 chr4 10475775 10475966 -145154154 - B4A SINE B4 -4 288 87 6 664 5008 74 33 0 chr4 10475966 10476632 -145153488 - L1_Mus3 LINE L1 -3 6635 5948 6 664 723 322 78 7 chr4 10476632 10476709 -145153411 - B4A SINE B4 -206 86 3 6 664 265 339 35 26 chr4 10476711 10476826 -145153294 - PB1D9 SINE Alu 0 120 5 6 664 21 36 0 0 chr4 10476826 10476854 -145153266 + AT_rich Low_complexity Low_complexity 1 28 0 6 664 6744 33 0 0 chr4 10476933 10477723 -145152397 + L1Md_T LINE L1 5793 6582 0 6 664 23 0 0 0 chr4 10477723 10477746 -145152374 + AT_rich Low_complexity Low_complexity 1 23 0 6 664 441 248 74 28 chr4 10478278 10478386 -145151734 + B4A SINE B4 1 113 -179 6 664 428 267 53 40 chr4 10478390 10478542 -145151578 + Lx8 LINE L1 6799 6952 -521 6 664 189 0 0 0 chr4 10478542 10478563 -145151557 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 664 1038 247 152 11 chr4 10478590 10478858 -145151262 + Lx8 LINE L1 7048 7341 -132 6 664 726 44 0 0 chr4 10478858 10478948 -145151172 + (GAA)n Simple_repeat Simple_repeat 2 91 0 6 664 1038 247 152 11 chr4 10478948 10479048 -145151072 + Lx8 LINE L1 7342 7467 -6 6 664 25 0 0 0 chr4 10479048 10479073 -145151047 + AT_rich Low_complexity Low_complexity 1 25 0 6 664 514 309 38 51 chr4 10479073 10479230 -145150890 + B4A SINE B4 83 237 -55 6 664 25 51 0 0 chr4 10479444 10479483 -145150637 + AT_rich Low_complexity Low_complexity 1 39 0 6 664 21 0 0 0 chr4 10481353 10481374 -145148746 + AT_rich Low_complexity Low_complexity 1 21 0 6 664 23 33 0 0 chr4 10481915 10481945 -145148175 + AT_rich Low_complexity Low_complexity 1 30 0 6 664 246 244 14 21 chr4 10482073 10482144 -145147976 - B1F SINE Alu -78 71 9 6 664 2186 226 91 9 chr4 10482153 10483042 -145147078 - Lx6 LINE L1 -695 6355 5372 6 664 271 185 0 0 chr4 10483041 10483095 -145147025 + Lx7 LINE L1 6633 6686 -1010 6 664 417 146 16 8 chr4 10483116 10483240 -145146880 + T-rich Low_complexity Low_complexity 1 125 0 6 664 1063 222 65 4 chr4 10483242 10483504 -145146616 + Lx6 LINE L1 7136 7413 -47 6 664 6483 70 17 3 chr4 10483810 10484714 -145145406 + L1Md_F2 LINE L1 5641 6556 -26 6 665 255 288 14 14 chr4 10485804 10485878 -145144242 + ID4_ SINE ID 2 75 -8 6 665 248 225 83 48 chr4 10486059 10486143 -145143977 - L1MA6 LINE L1 -303 5997 5911 6 665 647 278 36 21 chr4 10486136 10486467 -145143653 + L1M2 LINE L1 4871 5206 -937 6 665 255 324 46 0 chr4 10486689 10486797 -145143323 - Lx8 LINE L1 -99 7374 7262 6 665 490 284 38 19 chr4 10487108 10487266 -145142854 - MIR SINE MIR -10 252 92 6 665 345 326 22 22 chr4 10488943 10489081 -145141039 + MER97c DNA MER1_type? 410 547 -543 6 665 1203 275 3 92 chr4 10489382 10489739 -145140381 + RMER19C LTR ERVK 259 583 -28 6 665 3924 117 0 0 chr4 10489920 10490494 -145139626 + L1VL4 LINE L1 195 768 -5534 6 665 23545 167 22 20 chr4 10490524 10496934 -145133186 + Lx LINE L1 220 6654 0 6 665 2258 229 15 29 chr4 10497700 10498469 -145131651 + Lx6 LINE L1 6455 7434 -26 6 665 252 308 13 119 chr4 10499105 10499256 -145130864 - MLT1A0 LTR MaLR -230 135 1 6 665 481 287 30 25 chr4 10499622 10499822 -145130298 + Lx8 LINE L1 5706 5906 -1567 6 665 241 294 47 0 chr4 10500116 10500201 -145129919 + MIR3 SINE MIR 120 208 0 1 665 408 121 0 0 chr4 10500822 10500856 -145129264 + (GAA)n Simple_repeat Simple_repeat 1 34 0 2 665 1326 78 0 0 chr4 10500856 10501036 -145129084 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 665 408 121 0 0 chr4 10501036 10501067 -145129053 + (GAA)n Simple_repeat Simple_repeat 2 32 0 4 665 1196 203 166 69 chr4 10501383 10501848 -145128272 + Lx9 LINE L1 7128 7637 -7 5 665 956 166 14 23 chr4 10502234 10502569 -145127551 + CT-rich Low_complexity Low_complexity 1 332 0 6 665 26 0 0 0 chr4 10502834 10502860 -145127260 + AT_rich Low_complexity Low_complexity 1 26 0 7 665 982 281 38 22 chr4 10503112 10503479 -145126641 + Lx7 LINE L1 6818 7190 -506 8 665 21104 109 11 202 chr4 10503479 10507296 -145122824 + L1_Mus1 LINE L1 676 4512 -1371 9 665 2643 70 56 8 chr4 10507296 10507670 -145122450 + L1Md_F2 LINE L1 6179 6570 -12 1 665 21104 107 5 232 chr4 10507670 10508434 -145121686 + L1_Mus1 LINE L1 4513 4751 -1132 9 665 416 304 71 0 chr4 10508434 10508559 -145121561 + B1F SINE Alu 2 141 -8 1 665 21104 107 5 232 chr4 10508559 10508957 -145121163 + L1_Mus1 LINE L1 4752 4875 -1008 9 665 3007 83 2 0 chr4 10508957 10509353 -145120767 - L1_Mus1 LINE L1 0 6567 6171 1 665 21104 107 5 232 chr4 10509353 10509882 -145120238 + L1_Mus1 LINE L1 4876 5124 -759 9 665 8454 34 0 0 chr4 10509882 10510877 -145119243 + L1Md_A LINE L1 5587 6581 -1 1 665 21104 107 5 232 chr4 10510877 10511014 -145119106 + L1_Mus1 LINE L1 5125 5129 -754 9 665 7787 55 3 7 chr4 10511014 10512000 -145118120 + L1Md_F2 LINE L1 5589 6570 -12 1 665 21104 79 5 78 chr4 10512000 10513461 -145116659 + L1_Mus1 LINE L1 5130 6567 0 9 665 25 0 0 0 chr4 10513461 10513486 -145116634 + AT_rich Low_complexity Low_complexity 1 25 0 1 665 1002 107 0 0 chr4 10513617 10513767 -145116353 + (GAGAA)n Simple_repeat Simple_repeat 4 153 0 1 665 225 326 43 16 chr4 10513770 10513882 -145116238 + Lx7 LINE L1 7219 7333 -363 1 665 273 119 0 0 chr4 10513882 10513924 -145116196 + (CG)n Simple_repeat Simple_repeat 2 43 0 1 665 225 326 43 16 chr4 10513924 10513998 -145116122 + Lx7 LINE L1 7334 7410 -286 1 665 856 60 9 0 chr4 10514022 10514138 -145115982 - B1_Mm SINE Alu 0 147 31 1 665 286 250 0 24 chr4 10514216 10514298 -145115822 + Lx7 LINE L1 7605 7684 -12 1 665 1675 278 74 67 chr4 10514517 10515067 -145115053 - Lx5 LINE L1 -168 7292 6736 2 665 207 0 0 0 chr4 10515067 10515090 -145115030 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 665 19571 189 56 22 chr4 10515090 10518034 -145112086 - Lx5 LINE L1 -725 6735 3471 2 665 423 0 0 0 chr4 10518034 10518081 -145112039 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 665 19571 178 52 24 chr4 10518081 10519479 -145110641 - Lx5 LINE L1 -2410 3470 2059 2 665 618 49 0 0 chr4 10519479 10519561 -145110559 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 665 19571 188 42 38 chr4 10519561 10520649 -145109471 - Lx5 LINE L1 -3822 2058 940 2 665 185 132 26 0 chr4 10520681 10520719 -145109401 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 665 979 92 0 0 chr4 10520719 10520850 -145109270 - B1_Mus1 SINE Alu -9 139 9 2 665 183 184 0 0 chr4 10520920 10520958 -145109162 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 665 284 275 0 27 chr4 10521420 10521532 -145108588 - Lx5 LINE L1 -7401 327 219 2 665 459 252 52 35 chr4 10521935 10522050 -145108070 + PB1D10 SINE Alu 1 117 0 2 665 833 282 87 31 chr4 10523188 10523727 -145106393 + L1MA6 LINE L1 5645 6213 -87 2 665 7285 209 77 36 chr4 10523738 10525561 -145104559 - Lx7 LINE L1 0 7696 5799 2 665 5252 101 3 9 chr4 10525571 10526318 -145103802 - L1_Mus1 LINE L1 0 6567 5826 3 665 26096 110 7 30 chr4 10526318 10530874 -145099246 - L1_Mus1 LINE L1 -371 5512 1073 3 665 2292 183 13 6 chr4 10530873 10531351 -145098769 - L1_Mus1 LINE L1 -5411 1205 725 3 665 346 282 16 8 chr4 10531359 10531484 -145098636 - L1_Mus1 LINE L1 -5814 802 677 3 665 365 250 8 47 chr4 10531744 10531899 -145098221 - L1VL1 LINE L1 -6035 387 260 3 665 2532 150 43 18 chr4 10531907 10532416 -145097704 - L1_Mur3 LINE L1 -472 5408 4887 3 665 204 179 0 0 chr4 10532418 10532457 -145097663 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 3 665 383 275 12 0 chr4 10533033 10533113 -145097007 - RSINE1 SINE B4 -83 82 2 3 665 584 247 72 75 chr4 10533168 10533474 -145096646 - L1MD LINE L1 -1641 4505 4201 3 665 305 290 54 0 chr4 10533481 10533574 -145096546 + MTE2b LTR MaLR 1 98 -281 3 665 1217 296 48 9 chr4 10533636 10534092 -145096028 + Lx8 LINE L1 6615 7088 -385 3 665 907 227 20 5 chr4 10536141 10536340 -145093780 - B3 SINE B2 -13 203 2 3 665 199 267 53 104 chr4 10537289 10537459 -145092661 + MIR3 SINE MIR 2 159 -49 3 665 576 294 15 90 chr4 10537692 10537992 -145092128 + B4A SINE B4 4 268 -24 4 665 402 305 85 9 chr4 10538255 10538361 -145091759 - MER81 DNA AcHobo 0 114 1 4 665 202 227 23 0 chr4 10539741 10539785 -145090335 + CT-rich Low_complexity Low_complexity 3 47 0 4 665 882 250 0 9 chr4 10539826 10540040 -145090080 + B3 SINE B2 5 216 0 4 665 21 0 0 0 chr4 10540150 10540171 -145089949 + AT_rich Low_complexity Low_complexity 1 21 0 4 665 876 270 142 58 chr4 10542128 10542458 -145087662 - MTE2b LTR MaLR -21 358 1 4 665 541 252 148 121 chr4 10542741 10542937 -145087183 - MER31B LTR ERV1 -39 427 248 4 665 309 68 0 0 chr4 10542937 10542981 -145087139 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 665 541 252 148 121 chr4 10542981 10543163 -145086957 - MER31B LTR ERV1 -219 247 39 4 665 306 0 0 0 chr4 10543617 10543651 -145086469 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 665 966 55 0 23 chr4 10543651 10543772 -145086348 - B1_Mus1 SINE Alu -8 140 20 4 665 216 0 0 0 chr4 10543791 10543815 -145086305 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 665 695 293 42 57 chr4 10543816 10544235 -145085885 + MTE2a LTR MaLR 6 405 -14 5 665 342 0 0 0 chr4 10544412 10544450 -145085670 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 665 1139 88 0 0 chr4 10544703 10544850 -145085270 + B1_Mm SINE Alu 1 147 0 5 665 860 127 0 7 chr4 10544850 10544993 -145085127 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 5 665 280 271 15 0 chr4 10546695 10546798 -145083322 + L1MC LINE L1 4720 4826 -1320 5 665 274 390 19 0 chr4 10547702 10547807 -145082313 + MER45B DNA Tip100 3 109 -931 5 665 286 267 109 0 chr4 10547994 10548095 -145082025 + B1F SINE Alu 6 117 -32 5 665 184 274 20 0 chr4 10548343 10548394 -145081726 - L2a LINE L2 -4 3422 3371 5 665 181 143 56 28 chr4 10548913 10548949 -145081171 - L3 LINE CR1 -3523 966 930 5 665 261 0 0 0 chr4 10548966 10548995 -145081125 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 665 186 43 0 0 chr4 10549271 10549294 -145080826 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 6 665 541 36 24 12 chr4 10549312 10549396 -145080724 - L1Md_F2 LINE L1 -3 6579 6495 6 665 3671 92 25 14 chr4 10549434 10549993 -145080127 - L1_Mus3 LINE L1 -4 6634 6070 6 665 372 22 0 0 chr4 10553808 10553853 -145076267 + (CTA)n Simple_repeat Simple_repeat 1 45 0 6 665 596 261 119 5 chr4 10553860 10554053 -145076067 - B3 SINE B2 -1 215 1 6 665 1939 203 73 52 chr4 10554949 10555464 -145074656 + RMER19C LTR ERVK 26 611 0 6 665 1370 181 4 4 chr4 10555695 10555950 -145074170 - Lx2 LINE L1 -1 6996 6742 6 665 387 0 0 0 chr4 10556063 10556106 -145074014 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 665 273 262 0 62 chr4 10556405 10556470 -145073650 + MIRm SINE MIR 211 271 -5 6 665 774 275 150 60 chr4 10557115 10557281 -145072839 + MTEb LTR MaLR 9 190 -189 7 665 486 0 0 0 chr4 10557281 10557335 -145072785 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 665 774 275 150 60 chr4 10557335 10557501 -145072619 + MTEb LTR MaLR 191 371 -8 7 665 486 352 28 11 chr4 10557945 10558126 -145071994 + ORR1D2 LTR MaLR 4 187 -183 7 665 2693 331 75 33 chr4 10558265 10559584 -145070536 + ORR1D2-int LTR MaLR 4 1261 -109 7 665 380 324 90 6 chr4 10559649 10559826 -145070294 + ORR1D2 LTR MaLR 1 192 -167 7 665 392 232 46 102 chr4 10560540 10560823 -145069297 + L1MA10 LINE L1 6056 6322 -12 7 665 6367 83 32 18 chr4 10562295 10563206 -145066914 - Lx3_Mus LINE L1 0 7009 6086 7 665 1670 71 134 11 chr4 10563209 10563478 -145066642 + L1_Mur1 LINE L1 5391 5692 -194 7 665 5228 59 12 0 chr4 10563505 10564163 -145065957 + L1_Mus1 LINE L1 5902 6567 0 7 665 1660 312 109 35 chr4 10565240 10566245 -145063875 + Lx8 LINE L1 6187 7266 -207 7 665 444 238 40 0 chr4 10566273 10566399 -145063721 + Lx7 LINE L1 5795 5925 -1771 7 665 29184 114 19 3 chr4 10566399 10571869 -145058251 + L1_Mus1 LINE L1 443 5995 -572 7 665 9385 10 9 0 chr4 10571859 10573675 -145056445 - L1Md_A LINE L1 0 6582 4751 8 665 4469 76 7 2 chr4 10573675 10574269 -145055851 + L1_Mus1 LINE L1 5971 6567 0 7 665 441 97 0 0 chr4 10574497 10574569 -145055551 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 665 544 272 133 130 chr4 10576104 10576480 -145053640 - MTEb LTR MaLR 0 379 3 8 665 204 97 0 0 chr4 10576505 10576536 -145053584 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 665 238 241 143 59 chr4 10576565 10576684 -145053436 - MER103 DNA DNA -32 134 6 8 665 2380 214 50 37 chr4 10577440 10577818 -145052302 + Lx7 LINE L1 7002 7389 -307 8 665 231 36 0 0 chr4 10577818 10577846 -145052274 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 665 2380 214 50 37 chr4 10577846 10578003 -145052117 + Lx7 LINE L1 7390 7552 -144 8 665 450 0 0 0 chr4 10578003 10578053 -145052067 + (TGG)n Simple_repeat Simple_repeat 1 50 0 8 665 2380 214 50 37 chr4 10578053 10578189 -145051931 + Lx7 LINE L1 7553 7683 -13 8 665 29 47 0 0 chr4 10578229 10578272 -145051848 + AT_rich Low_complexity Low_complexity 1 43 0 8 665 267 158 34 34 chr4 10578546 10578605 -145051515 + MTE2b LTR MaLR 318 376 -3 8 665 2542 282 77 24 chr4 10578645 10579603 -145050517 - Lx8 LINE L1 -2 7471 6463 9 665 3605 131 119 35 chr4 10580191 10580886 -145049234 - Lx2 LINE L1 -29 6968 6215 9 665 1796 115 21 0 chr4 10580896 10581183 -145048937 + L1_Mur1 LINE L1 5334 5626 -260 9 665 8444 94 30 2 chr4 10581237 10582554 -145047566 - L1_Mur1 LINE L1 -950 4936 3583 9 665 4964 130 20 1 chr4 10582554 10583293 -145046827 + Lx3B LINE L1 6217 6969 -4 9 665 198 103 0 0 chr4 10583295 10583324 -145046796 + (GGA)n Simple_repeat Simple_repeat 2 30 0 9 665 243 88 0 0 chr4 10583343 10583377 -145046743 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 9 665 1245 85 0 0 chr4 10583377 10583553 -145046567 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 9 665 576 0 0 0 chr4 10583560 10583624 -145046496 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 9 665 262 118 14 42 chr4 10584226 10584297 -145045823 + T-rich Low_complexity Low_complexity 1 69 0 9 665 17705 89 3 1 chr4 10584718 10587330 -145042790 + L1Md_F2 LINE L1 2970 5585 -298 1 665 7787 53 11 3 chr4 10587331 10588307 -145041813 + L1Md_F2 LINE L1 5587 6570 -12 1 665 12622 120 5 16 chr4 10588307 10590692 -145039428 + L1VL4 LINE L1 940 3284 -2599 1 665 180 20 122 0 chr4 10591087 10591136 -145038984 + (CGGT)n Simple_repeat Simple_repeat 2 56 0 1 665 782 140 147 0 chr4 10591190 10591347 -145038773 - RLTR47_MM LTR ERV1 0 532 353 1 665 32 67 0 0 chr4 10592267 10592327 -145037793 + AT_rich Low_complexity Low_complexity 1 60 0 1 665 1249 83 11 22 chr4 10592383 10592567 -145037553 + B2_Mm2 SINE B2 3 184 -11 1 665 426 260 94 85 chr4 10592660 10592722 -145037398 - MLT1B LTR MaLR -165 225 160 1 665 1350 91 71 0 chr4 10592722 10592919 -145037201 - L1Md_F2 LINE L1 -12 6570 6360 1 665 426 260 94 85 chr4 10592919 10593079 -145037041 - MLT1B LTR MaLR -231 159 1 1 665 295 299 17 25 chr4 10593100 10593220 -145036900 + GA-rich Low_complexity Low_complexity 1 119 0 1 665 1149 35 0 0 chr4 10593221 10593363 -145036757 + (AGTAG)n Simple_repeat Simple_repeat 3 144 0 1 665 218 56 28 0 chr4 10593365 10593401 -145036719 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 1 665 336 228 30 24 chr4 10593398 10593564 -145036556 + GA-rich Low_complexity Low_complexity 1 167 0 1 665 6340 222 55 71 chr4 10593961 10594056 -145036064 - Lx6 LINE L1 -27 7433 7314 1 665 243 0 0 0 chr4 10594056 10594083 -145036037 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 665 6340 222 55 71 chr4 10594083 10595107 -145035013 - Lx6 LINE L1 -147 7313 6275 1 665 2989 86 8 0 chr4 10595107 10595504 -145034616 + MTB LTR MaLR 1 400 0 1 665 6340 222 55 71 chr4 10595504 10596217 -145033903 - Lx6 LINE L1 -1186 6274 5631 1 665 329 288 17 8 chr4 10596438 10596557 -145033563 - MER58D DNA MER1_type -30 356 237 1 665 2100 168 23 21 chr4 10596598 10596986 -145033134 - Lx4A LINE L1 0 7058 6670 1 665 596 266 25 19 chr4 10597362 10597495 -145032625 + RSINE1 SINE B4 4 140 -25 1 665 261 0 0 0 chr4 10597495 10597524 -145032596 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 665 596 266 25 19 chr4 10597524 10597551 -145032569 + RSINE1 SINE B4 141 164 -1 1 665 1492 276 7 2 chr4 10598067 10598499 -145031621 + L1MC4a LINE L1 5392 5825 -2057 1 665 345 271 83 0 chr4 10598516 10598612 -145031508 - MER119 DNA MER1_type 0 583 480 1 665 30 59 0 0 chr4 10598683 10598734 -145031386 + AT_rich Low_complexity Low_complexity 1 51 0 1 665 229 0 54 27 chr4 10599125 10599162 -145030958 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 665 27 49 0 0 chr4 10599609 10599650 -145030470 + AT_rich Low_complexity Low_complexity 1 41 0 1 665 37662 15 14 6 chr4 10599816 10606138 -145023982 - L1Md_A LINE L1 0 6582 214 1 665 252 274 143 67 chr4 10606213 10606541 -145023579 + L1MC4a LINE L1 6837 7189 -772 1 665 664 302 31 44 chr4 10606942 10607236 -145022884 + B4A SINE B4 3 292 0 1 665 225 260 75 37 chr4 10607259 10607447 -145022673 + L1MC4a LINE L1 7479 7673 -288 1 665 519 254 79 7 chr4 10608015 10608154 -145021966 - MLT1A1 LTR MaLR 0 408 260 1 665 189 159 0 0 chr4 10608182 10608226 -145021894 + GA-rich Low_complexity Low_complexity 1 44 0 1 665 529 286 38 20 chr4 10608432 10608725 -145021395 + L1_Mur3 LINE L1 2895 3192 -2688 1 665 10344 131 31 5 chr4 10608726 10611464 -145018656 + L1VL2 LINE L1 470 3284 -2599 1 665 4758 86 39 0 chr4 10611483 10612133 -145017987 - Lx3_Mus LINE L1 0 7009 6335 1 665 5568 242 59 113 chr4 10612699 10613409 -145016711 + L1_Mur3 LINE L1 3178 3905 -1975 1 665 834 64 0 0 chr4 10613409 10613518 -145016602 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 665 5568 242 59 113 chr4 10613518 10613984 -145016136 + L1_Mur3 LINE L1 3906 4363 -1517 1 665 213 39 0 0 chr4 10613992 10614018 -145016102 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 665 1082 113 0 7 chr4 10614018 10614160 -145015960 - B1_Mur4 SINE Alu -8 142 1 1 665 5568 242 59 113 chr4 10614160 10614312 -145015808 + L1_Mur3 LINE L1 4364 4494 -1386 1 665 277 263 60 10 chr4 10614312 10614412 -145015708 - ORR1D1 LTR MaLR 0 374 270 1 665 5568 242 59 113 chr4 10614412 10614593 -145015527 + L1_Mur3 LINE L1 4495 4652 -1228 1 665 184 30 61 0 chr4 10614593 10614626 -145015494 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 665 5568 248 62 109 chr4 10614626 10615558 -145014562 + L1_Mur3 LINE L1 4625 5523 -324 1 665 984 197 15 29 chr4 10615558 10615762 -145014358 + MTD LTR MaLR 205 405 -14 1 665 1394 233 11 3 chr4 10615776 10616060 -145014060 + L1_Rod LINE L1 5552 5837 -10 1 83 2147 299 83 19 chr4 10616084 10617006 -145013114 + Lx8 LINE L1 6443 7471 -2 1 666 378 292 222 4 chr4 10617483 10617717 -145012403 + RMER15 LTR ERVL 274 558 -17 1 666 324 0 0 0 chr4 10617775 10617811 -145012309 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 666 1658 179 49 46 chr4 10620859 10621086 -145009034 + ORR1D1 LTR MaLR 5 241 -133 1 666 1473 48 26 0 chr4 10621086 10621929 -145008191 + (CCTG)n Simple_repeat Simple_repeat 1 865 0 1 666 1658 179 49 46 chr4 10621929 10622062 -145008058 + ORR1D1 LTR MaLR 242 370 -4 1 666 731 268 134 63 chr4 10622440 10622739 -145007381 - Lx8 LINE L1 0 7473 7154 1 666 2112 143 63 0 chr4 10622743 10623106 -145007014 + ORR1B1 LTR MaLR 1 386 -8 1 666 459 280 28 0 chr4 10623119 10623226 -145006894 - Lx8 LINE L1 -340 7133 7024 1 666 994 287 66 0 chr4 10625173 10625431 -145004689 - B4A SINE B4 -17 275 1 1 666 222 277 71 24 chr4 10625920 10626005 -145004115 - L2a LINE L2 0 3426 3338 1 666 759 271 88 49 chr4 10626233 10626601 -145003519 - MLT1D LTR MaLR -66 439 70 1 666 208 114 0 64 chr4 10627068 10627115 -145003005 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 666 255 203 0 0 chr4 10627518 10627582 -145002538 + (CCA)n Simple_repeat Simple_repeat 2 65 0 1 666 343 352 147 48 chr4 10629780 10630135 -144999985 + MLT1N2 LTR MaLR 153 542 -20 1 666 2558 145 75 61 chr4 10630435 10630920 -144999200 + RMER20B LTR ERVK 1 484 -143 1 666 207 0 0 0 chr4 10630920 10630943 -144999177 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 666 2558 145 75 61 chr4 10630943 10631000 -144999120 + RMER20B LTR ERVK 485 551 -76 1 666 278 122 0 0 chr4 10631138 10631179 -144998941 - tRNA-Leu-TTG tRNA tRNA -45 41 1 1 666 347 198 12 36 chr4 10631198 10631282 -144998838 - MLT1A1 LTR MaLR 0 408 327 1 666 337 270 79 8 chr4 10633019 10633146 -144996974 - RSINE1 SINE B4 -27 138 3 1 666 380 270 286 14 chr4 10633714 10633875 -144996245 + B4A SINE B4 1 206 -86 1 666 225 0 0 0 chr4 10633875 10633900 -144996220 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1 666 380 256 165 24 chr4 10633900 10633970 -144996150 + B4A SINE B4 207 286 -6 1 666 5846 70 30 3 chr4 10635273 10636037 -144994083 - L1Md_F2 LINE L1 -3 6579 5795 1 666 1596 42 5 0 chr4 10636313 10636503 -144993617 + B2_Mm1t SINE B2 2 192 -1 1 666 393 277 114 101 chr4 10636536 10636734 -144993386 + L1MA5 LINE L1 5850 6038 -259 1 666 1525 257 47 6 chr4 10636734 10637098 -144993022 - MTE2a LTR MaLR 0 379 1 1 666 393 307 98 83 chr4 10637098 10637337 -144992783 + L1MA5 LINE L1 6037 6296 -4 1 666 4158 53 0 15 chr4 10638297 10638830 -144991290 + L1Md_F3 LINE L1 6061 6584 0 1 666 4158 53 0 15 chr4 10638830 10638850 -144991270 + L1Md_F3 LINE L1 6560 6572 -12 1 666 324 0 0 0 chr4 10638905 10638941 -144991179 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 666 244 285 120 23 chr4 10639388 10639521 -144990599 + L1MB1 LINE L1 5966 6111 -78 1 666 555 218 0 16 chr4 10640061 10640187 -144989933 - B1_Mur2 SINE Alu 0 149 26 1 666 290 285 0 89 chr4 10640187 10640217 -144989903 - ID_B1 SINE B4 -1 221 80 1 666 1044 94 0 0 chr4 10640819 10640957 -144989163 - L1_Mm LINE L1 -182 5701 5564 1 666 204 67 0 0 chr4 10640957 10640987 -144989133 + (T)n Simple_repeat Simple_repeat 1 30 0 1 666 2448 44 0 3 chr4 10640990 10641287 -144988833 - L1Md_T LINE L1 -2 6580 6285 1 666 4187 33 0 0 chr4 10641287 10641771 -144988349 + L1Md_T LINE L1 5821 6304 -278 1 666 7600 101 2 3 chr4 10641770 10642825 -144987295 - L1_Mm LINE L1 -305 5578 4525 1 666 6983 57 7 1 chr4 10642821 10643678 -144986442 + L1_Mus1 LINE L1 5706 6567 0 1 666 241 88 0 0 chr4 10643713 10643747 -144986373 + U2 snRNA snRNA 3 36 -152 1 666 403 297 69 17 chr4 10643785 10644018 -144986102 + L1MC4 LINE L1 6846 7090 -952 1 666 471 35 0 0 chr4 10644228 10644285 -144985835 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 666 282 56 0 0 chr4 10644424 10644460 -144985660 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 666 300 111 0 0 chr4 10644543 10644588 -144985532 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 666 219 36 0 0 chr4 10644588 10644615 -144985505 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 1 666 290 342 38 13 chr4 10644616 10644773 -144985347 + L1MC4 LINE L1 7500 7660 -382 1 666 2024 204 47 40 chr4 10645162 10645689 -144984431 + MT2A LTR ERVL 1 531 -2 1 666 2417 28 0 14 chr4 10646503 10646793 -144983327 - L1VL1 LINE L1 -5533 889 604 1 666 17367 89 3 5 chr4 10647009 10650195 -144979925 + L1_Mus1 LINE L1 3388 6567 0 1 666 194 276 91 13 chr4 10650646 10650723 -144979397 + MIRm SINE MIR 74 156 -120 1 666 21 36 0 0 chr4 10651613 10651641 -144978479 + AT_rich Low_complexity Low_complexity 1 28 0 1 666 257 176 59 0 chr4 10651888 10651939 -144978181 + tRNA-Ala-GCY_ tRNA tRNA 2 55 -20 1 666 3365 74 18 0 chr4 10651941 10652389 -144977731 - L1Md_F2 LINE L1 -1 6581 6126 1 666 4378 55 0 0 chr4 10652389 10653076 -144977044 + L1Md_F2 LINE L1 5422 6108 -474 1 666 284 179 167 0 chr4 10653120 10653198 -144976922 + MER2 DNA MER2_type 112 202 -143 1 666 203 276 51 17 chr4 10653244 10653303 -144976817 + MIRc SINE MIR 18 78 -190 1 666 676 245 134 11 chr4 10653571 10653839 -144976281 - ERVL-B4-int LTR ERVL -3555 2159 1859 1 666 741 293 111 0 chr4 10654162 10654387 -144975733 - B4A SINE B4 -2 290 41 1 666 281 286 0 12 chr4 10655217 10655302 -144974818 + MLT1I LTR MaLR 99 182 -229 1 666 351 113 0 0 chr4 10655905 10655958 -144974162 + (T)n Simple_repeat Simple_repeat 1 53 0 1 666 1079 59 22 0 chr4 10655960 10656096 -144974024 - B1_Mus2 SINE Alu -4 143 5 1 666 478 248 47 33 chr4 10657273 10657423 -144972697 + RSINE1 SINE B4 14 165 0 1 666 28 71 0 0 chr4 10657428 10657484 -144972636 + AT_rich Low_complexity Low_complexity 1 56 0 1 666 593 156 9 35 chr4 10657552 10657665 -144972455 + B1_Mur4 SINE Alu 35 144 -6 1 666 437 0 19 0 chr4 10657669 10657722 -144972398 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 666 613 272 75 81 chr4 10660269 10660392 -144969728 + MER102a DNA MER1_type 1 123 -207 1 666 270 0 0 0 chr4 10660392 10660422 -144969698 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 666 243 0 0 0 chr4 10660428 10660455 -144969665 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 666 613 272 75 81 chr4 10660455 10660656 -144969464 + MER102a DNA MER1_type 124 330 0 1 666 581 298 34 61 chr4 10660776 10661073 -144969047 + B4A SINE B4 1 289 -3 1 666 5591 148 3 104 chr4 10661719 10663153 -144966967 + L1Md_F LINE L1 104 1344 -5380 1 666 12244 21 0 1 chr4 10665999 10667396 -144962724 + L1Md_T LINE L1 4191 5586 -297 2 666 8243 52 0 0 chr4 10667396 10668392 -144961728 + L1Md_T LINE L1 5587 6582 0 2 666 349 184 299 0 chr4 10668406 10668493 -144961627 + B1_Mur1 SINE Alu 18 130 -19 2 666 225 226 38 0 chr4 10668764 10668817 -144961303 + MLT1C LTR MaLR 413 467 0 2 666 215 127 35 52 chr4 10668953 10669011 -144961109 + A-rich Low_complexity Low_complexity 4 60 0 2 666 333 177 74 25 chr4 10669078 10669159 -144960961 + B4A SINE B4 208 292 0 2 666 217 178 0 22 chr4 10669170 10669216 -144960904 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 666 920 266 55 159 chr4 10669843 10670264 -144959856 - MTE2b LTR MaLR -2 377 1 2 666 1046 68 15 0 chr4 10671196 10671329 -144958791 + B1_Mus1 SINE Alu 2 136 -12 2 666 309 26 0 0 chr4 10671330 10671368 -144958752 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 666 253 303 78 29 chr4 10672979 10673081 -144957039 + MLT1H2 LTR MaLR 68 174 -315 2 666 730 238 37 11 chr4 10673205 10673396 -144956724 - Lx8 LINE L1 -474 6999 6804 2 666 213 94 0 0 chr4 10673513 10673545 -144956575 + (T)n Simple_repeat Simple_repeat 1 32 0 2 666 365 171 108 25 chr4 10674313 10674433 -144955687 + Lx9 LINE L1 7515 7644 0 2 666 630 233 8 8 chr4 10674602 10674736 -144955384 + B3 SINE B2 3 136 -80 2 666 4417 10 0 0 chr4 10674823 10675305 -144954815 + LTRIS_Mm LTR ERV1 1 482 0 2 666 361 207 63 30 chr4 10675843 10675983 -144954137 - L1M2 LINE L1 -663 5501 5350 2 666 302 180 0 0 chr4 10675994 10676055 -144954065 - Lx3C LINE L1 0 6976 6916 2 666 277 239 93 76 chr4 10676066 10676184 -144953936 + RLTR20D LTR ERVK 60 179 -389 2 666 2677 134 27 29 chr4 10676583 10677076 -144953044 - Lx3C LINE L1 -32 6977 6484 2 666 3427 133 68 36 chr4 10677076 10678003 -144952117 - RLTR13D1 LTR ERVK -58 965 62 2 666 1536 77 43 5 chr4 10678004 10678214 -144951906 - Lx3B LINE L1 -482 6491 6274 2 666 1140 244 36 69 chr4 10678246 10678696 -144951424 - L1M2 LINE L1 -863 5280 4846 2 666 1467 278 90 36 chr4 10678819 10679699 -144950421 + L1M2 LINE L1 3328 4254 -1889 2 666 213 139 0 0 chr4 10679730 10679773 -144950347 + (A)n Simple_repeat Simple_repeat 1 43 0 2 666 263 268 35 11 chr4 10679937 10680024 -144950096 + GA-rich Low_complexity Low_complexity 4 92 0 2 666 412 284 45 0 chr4 10680801 10680935 -144949185 - ORR1E LTR MaLR -218 141 2 2 666 24 32 0 0 chr4 10681058 10681089 -144949031 + AT_rich Low_complexity Low_complexity 1 31 0 2 666 1274 20 0 0 chr4 10681640 10681787 -144948333 + B1_Mus2 SINE Alu 1 147 0 2 666 714 354 52 41 chr4 10681808 10682306 -144947814 - MLT1G1 LTR MaLR -36 543 3 2 666 204 135 0 0 chr4 10682469 10682506 -144947614 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 666 243 260 115 39 chr4 10682544 10682648 -144947472 - B4 SINE B4 -180 112 1 2 666 560 298 73 39 chr4 10683279 10683565 -144946555 - MER82 DNA MER2_type -15 638 343 2 666 201 306 80 44 chr4 10684764 10684877 -144945243 - MIR SINE MIR -28 234 118 2 666 253 215 200 71 chr4 10684880 10684965 -144945155 + PB1D10 SINE Alu 16 111 -6 2 666 312 27 0 0 chr4 10684995 10685032 -144945088 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 666 237 324 14 0 chr4 10685700 10685771 -144944349 + L2a LINE L2 3299 3370 -56 2 666 346 254 90 60 chr4 10686372 10686608 -144943512 - L1MA4 LINE L1 -275 6028 5821 2 666 3506 137 4 62 chr4 10686608 10686977 -144943143 + RLTR26 LTR ERVK 3 356 -286 2 666 4441 57 29 7 chr4 10686977 10687525 -144942595 + LTRIS2 LTR ERV1 5 564 0 2 666 3506 137 4 62 chr4 10687525 10687834 -144942286 + RLTR26 LTR ERVK 357 642 0 2 666 860 293 60 9 chr4 10687836 10688170 -144941950 - L1MA7 LINE L1 -465 5826 5476 2 666 466 211 118 34 chr4 10688277 10688476 -144941644 - L1MA7 LINE L1 -863 5280 5072 2 666 768 277 100 11 chr4 10688481 10688751 -144941369 - MER2 DNA MER2_type -51 294 1 2 666 1447 234 20 20 chr4 10689147 10689488 -144940632 - Lx6 LINE L1 0 7460 7120 2 666 6821 97 41 23 chr4 10689925 10691126 -144938994 - Lx4A LINE L1 -1032 6026 4807 2 666 6333 126 51 10 chr4 10691126 10692118 -144938002 + Lx4A LINE L1 6025 7057 -1 2 666 378 42 0 0 chr4 10693015 10693063 -144937057 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 666 281 316 0 20 chr4 10695673 10695773 -144934347 - MIR3 SINE MIR -51 157 60 2 666 238 356 169 8 chr4 10696858 10696988 -144933132 - MER5A DNA MER1_type 0 189 39 2 666 182 313 71 12 chr4 10697697 10697781 -144932339 + MIRb SINE MIR 93 181 -87 2 666 450 187 0 0 chr4 10697950 10698041 -144932079 - RMER13B LTR ERVK -13 895 805 2 666 2070 193 31 44 chr4 10698038 10698515 -144931605 + RMER13B LTR ERVK 438 908 0 2 666 686 258 62 16 chr4 10698748 10698941 -144931179 - B3 SINE B2 0 216 15 2 666 210 268 48 24 chr4 10699450 10699534 -144930586 + MIRc SINE MIR 163 248 -20 2 666 672 247 37 12 chr4 10700061 10700225 -144929895 + B3A SINE B2 1 168 -30 2 666 439 319 29 29 chr4 10700617 10700791 -144929329 + MLT1B LTR MaLR 188 361 -29 2 666 1985 122 197 11 chr4 10701042 10701397 -144928723 + MTC LTR MaLR 1 421 0 2 666 183 238 59 59 chr4 10702724 10702809 -144927311 - L4 LINE RTE -1791 238 154 2 666 2227 122 25 62 chr4 10705917 10706318 -144923802 - ORR1B1 LTR MaLR -8 386 1 2 666 234 0 0 0 chr4 10706946 10706972 -144923148 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 666 396 0 0 0 chr4 10706972 10707015 -144923105 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 666 213 350 0 0 chr4 10707015 10707075 -144923045 - PB1D10 SINE Alu -57 60 1 2 666 980 254 91 48 chr4 10707785 10708135 -144921985 - MTE2a LTR MaLR 0 419 47 2 666 4782 57 24 0 chr4 10708135 10708727 -144921393 + L1_Mus1 LINE L1 5961 6566 -1 2 666 1828 139 83 59 chr4 10708810 10709184 -144920936 + ORR1C2 LTR MaLR 2 384 0 2 666 5091 32 10 0 chr4 10709403 10709992 -144920128 - L1Md_F2 LINE L1 0 6582 5988 2 666 2201 224 53 46 chr4 10710080 10710688 -144919432 + RMER1C Other Other 731 1342 0 2 666 445 304 92 28 chr4 10711394 10711711 -144918409 + MTEa LTR MaLR 17 371 -8 2 666 1564 249 40 26 chr4 10712171 10712669 -144917451 - RLTR16 LTR ERVK 0 505 1 2 666 311 327 87 0 chr4 10712983 10713087 -144917033 + B4 SINE B4 4 116 -176 2 666 211 349 12 0 chr4 10713146 10713229 -144916891 + RSINE1 SINE B4 78 161 -4 2 666 1916 67 8 0 chr4 10713576 10713843 -144916277 + RLTR13B4 LTR ERVK 434 702 -101 2 666 297 219 0 0 chr4 10714063 10714136 -144915984 + GA-rich Low_complexity Low_complexity 1 73 0 2 666 3704 142 31 25 chr4 10714463 10715108 -144915012 + Lx2 LINE L1 6349 6997 0 2 666 1989 169 17 6 chr4 10716037 10716399 -144913721 + RLTR14 LTR ERV1 17 382 0 2 666 227 359 38 19 chr4 10717452 10717557 -144912563 + LTR16C LTR ERVL 186 292 -197 2 666 2061 118 38 9 chr4 10718418 10718736 -144911384 - ORR1A2 LTR MaLR 0 327 1 2 666 450 79 0 0 chr4 10719332 10719395 -144910725 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 666 22 35 0 0 chr4 10719686 10719715 -144910405 + AT_rich Low_complexity Low_complexity 1 29 0 2 666 386 299 55 0 chr4 10720016 10720143 -144909977 + MLT1A1 LTR MaLR 1 134 -274 2 666 263 316 69 4 chr4 10722001 10722121 -144907999 + B1F SINE Alu 1 127 -22 2 666 210 37 0 0 chr4 10722135 10722162 -144907958 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 666 3217 244 57 110 chr4 10722718 10723116 -144907004 - Lx8 LINE L1 -2 7471 7036 2 666 3457 40 0 0 chr4 10723116 10723512 -144906608 - MTA_Mm LTR MaLR 0 396 1 2 666 3217 244 57 110 chr4 10723512 10724263 -144905857 - Lx8 LINE L1 -438 7035 6384 2 666 333 331 217 0 chr4 10725493 10725650 -144904470 + Lx8 LINE L1 7139 7329 -144 2 666 604 127 18 0 chr4 10725654 10725764 -144904356 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 666 668 222 10 39 chr4 10726798 10726969 -144903151 + B3A SINE B2 41 211 -5 2 666 229 279 55 0 chr4 10727005 10727089 -144903031 + ID2 SINE ID 7 94 -58 2 666 4779 59 5 13 chr4 10727282 10727899 -144902221 + L1Md_F2 LINE L1 5952 6563 -19 2 666 360 0 0 0 chr4 10728744 10728784 -144901336 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 666 423 0 0 0 chr4 10729148 10729195 -144900925 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 666 592 176 185 46 chr4 10729743 10729916 -144900204 + B3 SINE B2 1 197 -19 2 666 629 110 10 0 chr4 10730180 10730280 -144899840 + (TTGG)n Simple_repeat Simple_repeat 3 103 0 2 666 948 295 10 16 chr4 10730542 10730849 -144899271 - MER121 Unknown Unknown -47 365 61 2 666 188 224 0 39 chr4 10731559 10731610 -144898510 - MIR SINE MIR -58 150 102 2 666 1215 31 18 6 chr4 10733217 10733381 -144896739 + B2_Mm2 SINE B2 3 168 -27 2 666 1318 85 11 5 chr4 10733399 10733589 -144896531 + L1Md_F2 LINE L1 6382 6572 -10 2 666 635 67 11 0 chr4 10733641 10733730 -144896390 + (GAGAA)n Simple_repeat Simple_repeat 3 92 0 2 666 517 273 84 26 chr4 10735626 10735780 -144894340 + B4A SINE B4 1 163 -129 2 666 556 182 208 0 chr4 10735907 10736066 -144894054 + MER121 Unknown Unknown 76 267 -145 2 666 281 203 14 0 chr4 10736672 10736741 -144893379 - MER121 Unknown Unknown -229 183 114 2 666 189 0 0 0 chr4 10736755 10736776 -144893344 + (A)n Simple_repeat Simple_repeat 1 21 0 2 666 212 308 94 19 chr4 10736823 10736929 -144893191 - MER5A DNA MER1_type -69 120 7 2 666 525 244 219 25 chr4 10737140 10737455 -144892665 + L1MA9 LINE L1 5525 5900 -412 2 666 874 302 180 29 chr4 10738403 10739413 -144890707 + L1MC4 LINE L1 6574 7736 -306 3 666 584 230 172 0 chr4 10740257 10740431 -144889689 + B3 SINE B2 7 210 -6 3 666 480 99 0 0 chr4 10741936 10742007 -144888113 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 666 14559 87 17 12 chr4 10742198 10744994 -144885126 + L1Md_F LINE L1 366 3175 -2708 3 666 238 281 52 9 chr4 10745064 10745179 -144884941 - MIR SINE MIR -73 189 70 3 666 242 341 12 0 chr4 10745276 10745358 -144884762 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 666 334 323 15 23 chr4 10745553 10745683 -144884437 - B4A SINE B4 -163 129 1 3 666 189 0 0 0 chr4 10745875 10745896 -144884224 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 666 906 294 95 14 chr4 10745919 10746267 -144883853 - MLT2B2 LTR ERVL -137 378 3 3 666 261 305 0 0 chr4 10746275 10746334 -144883786 + polypyrimidine Low_complexity Low_complexity 3 61 0 3 666 257 271 15 17 chr4 10746409 10746511 -144883609 - PB1D10 SINE Alu -11 138 38 3 666 21 0 0 0 chr4 10747157 10747178 -144882942 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 598 246 0 0 chr4 10747559 10747685 -144882435 + ID_B1 SINE B4 91 216 -8 3 83 456 266 45 47 chr4 10747819 10748130 -144881990 + ORR1E LTR MaLR 12 377 -2 3 667 756 107 0 0 chr4 10748137 10748249 -144881871 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 3 667 333 62 0 0 chr4 10749396 10749444 -144880676 + (A)n Simple_repeat Simple_repeat 1 48 0 3 667 339 309 120 101 chr4 10750041 10750228 -144879892 + MLT1B LTR MaLR 1 200 -174 3 667 360 0 0 0 chr4 10750228 10750268 -144879852 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 667 360 297 81 19 chr4 10750268 10750447 -144879673 + MLT1B LTR MaLR 201 390 0 3 667 1388 243 78 13 chr4 10750525 10750874 -144879246 + MTD LTR MaLR 6 374 -45 3 667 252 0 0 0 chr4 10750874 10750902 -144879218 + (TGG)n Simple_repeat Simple_repeat 1 28 0 3 667 1388 243 78 13 chr4 10750902 10750939 -144879181 + MTD LTR MaLR 375 416 -3 3 667 310 273 46 118 chr4 10751238 10751433 -144878687 + RMER15 LTR ERVL 342 522 -53 3 667 1346 259 19 12 chr4 10751627 10751952 -144878168 - Lx8 LINE L1 -610 6863 6537 3 667 461 314 19 25 chr4 10751958 10752118 -144878002 - RMER15-int LTR ERVL -576 4423 4265 3 667 252 303 17 92 chr4 10752123 10752243 -144877877 + Lx9 LINE L1 5855 5965 -1679 3 667 644 272 6 25 chr4 10752638 10752800 -144877320 + Lx8 LINE L1 6200 6358 -1115 3 667 1022 243 23 0 chr4 10753709 10753927 -144876193 + ID_B1 SINE B4 1 223 -1 3 667 1594 162 58 7 chr4 10754155 10754465 -144875655 - ORR1C2 LTR MaLR 0 384 59 3 667 2268 152 48 8 chr4 10754467 10754864 -144875256 - MTC LTR MaLR -8 413 1 3 667 333 175 63 0 chr4 10754864 10754925 -144875195 - ORR1C2 LTR MaLR -319 65 1 3 667 337 244 33 11 chr4 10755226 10755317 -144874803 - Tigger5 DNA MER2_type 0 2406 2314 3 667 670 286 57 39 chr4 10755359 10755744 -144874376 + L1MC4a LINE L1 7231 7622 -260 3 667 272 111 0 135 chr4 10755859 10755911 -144874209 + Lx9 LINE L1 6802 6846 -798 3 667 519 263 61 21 chr4 10755888 10756029 -144874091 + Lx9 LINE L1 7339 7481 -163 3 667 318 98 0 0 chr4 10756029 10756080 -144874040 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 667 519 263 61 21 chr4 10756080 10756218 -144873902 + Lx9 LINE L1 7482 7628 -16 3 667 34 0 0 0 chr4 10756224 10756258 -144873862 + AT_rich Low_complexity Low_complexity 1 34 0 3 667 211 279 62 12 chr4 10756683 10756763 -144873357 - MIRc SINE MIR -183 85 2 3 667 3203 29 28 13 chr4 10756875 10757265 -144872855 - MTA_Mm LTR MaLR 0 396 1 3 667 964 122 85 23 chr4 10757298 10757474 -144872646 - B2_Mm2 SINE B2 -7 188 2 3 667 254 288 108 22 chr4 10757595 10757752 -144872368 - MIR SINE MIR -11 257 78 3 667 513 339 43 26 chr4 10758256 10758489 -144871631 + ORR1E LTR MaLR 3 239 -120 3 667 7821 83 9 5 chr4 10758677 10759750 -144870370 - Lx3_Mus LINE L1 0 7009 5932 3 667 2403 65 0 32 chr4 10759750 10760066 -144870054 + Lx3_Mus LINE L1 5614 5919 -1090 3 667 30 0 0 0 chr4 10760070 10760100 -144870020 + AT_rich Low_complexity Low_complexity 1 30 0 3 667 682 239 21 21 chr4 10760107 10760252 -144869868 + B1_Mur1 SINE Alu 2 146 -3 3 667 708 258 119 47 chr4 10760621 10760939 -144869181 - RLTR14 LTR ERV1 -41 341 1 3 667 1151 92 11 26 chr4 10761206 10761395 -144868725 - L1_Mus4 LINE L1 -3 6633 6448 3 667 459 113 0 0 chr4 10763510 10763581 -144866539 + (TATATG)n Simple_repeat Simple_repeat 5 75 0 3 667 262 169 68 0 chr4 10765338 10765397 -144864723 - MTD LTR MaLR 0 419 357 3 667 4519 21 0 0 chr4 10765397 10765915 -144864205 - L1_Mm LINE L1 -1331 4552 4035 3 667 830 258 152 0 chr4 10765915 10766217 -144863903 - MTD LTR MaLR -65 354 7 3 667 1545 200 186 71 chr4 10766215 10767221 -144862899 - MTD-int LTR MaLR -7 1251 1 3 667 1579 253 43 13 chr4 10767232 10767625 -144862495 - MTD LTR MaLR -12 407 3 3 667 1263 222 254 50 chr4 10767661 10768059 -144862061 + MT2A LTR ERVL 1 489 -44 3 667 513 0 0 0 chr4 10768059 10768116 -144862004 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 3 667 1263 222 254 50 chr4 10768116 10768158 -144861962 + MT2A LTR ERVL 490 531 -2 3 667 689 258 157 15 chr4 10768204 10768523 -144861597 + MLT1A0 LTR MaLR 1 365 0 3 667 1136 200 19 23 chr4 10768623 10768838 -144861282 - B3 SINE B2 -1 215 2 3 667 351 212 100 0 chr4 10769372 10769410 -144860710 + MTEa LTR MaLR 118 205 -174 3 667 329 234 62 57 chr4 10769410 10769452 -144860668 + RMER17A LTR ERVK 228 270 -481 3 667 207 0 0 0 chr4 10769452 10769475 -144860645 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 3 667 329 234 62 57 chr4 10769475 10769605 -144860515 + RMER17A LTR ERVK 271 408 -343 3 667 442 233 175 26 chr4 10769605 10769616 -144860504 + MTEa LTR MaLR 201 211 -168 3 667 210 37 0 0 chr4 10769616 10769643 -144860477 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 667 329 234 62 57 chr4 10769643 10769667 -144860453 + RMER17A LTR ERVK 409 436 -315 3 667 443 232 73 27 chr4 10769667 10769785 -144860335 + MTEa LTR MaLR 212 377 -2 3 667 227 242 167 29 chr4 10769789 10769891 -144860229 + L1MC4a LINE L1 7755 7870 -12 3 667 623 237 239 27 chr4 10770686 10770965 -144859155 + MTE2a LTR MaLR 52 379 0 3 667 216 0 0 0 chr4 10770974 10770998 -144859122 + (TTA)n Simple_repeat Simple_repeat 1 24 0 3 667 2964 47 0 0 chr4 10770998 10771358 -144858762 - L1_Mus1 LINE L1 -10 6557 6198 3 667 295 266 27 43 chr4 10771358 10771543 -144858577 - L1M2 LINE L1 -4790 2059 1878 3 667 272 259 54 0 chr4 10772159 10772271 -144857849 + L1M3 LINE L1 5165 5282 -858 3 667 3144 70 56 2 chr4 10772272 10772718 -144857402 + MusHAL1 LINE L1 1362 1831 -881 3 667 820 28 55 0 chr4 10772718 10772827 -144857293 - MTA_Mm LTR MaLR -281 115 1 3 667 1117 81 0 23 chr4 10772827 10773004 -144857116 + MusHAL1 LINE L1 2540 2712 0 3 667 993 301 15 0 chr4 10773053 10773319 -144856801 + B4A SINE B4 16 285 -7 3 667 210 261 0 0 chr4 10774772 10774818 -144855302 + GA-rich Low_complexity Low_complexity 4 49 0 3 667 1439 178 158 34 chr4 10775107 10775462 -144854658 - RMER15 LTR ERVL -3 572 174 3 667 316 273 0 0 chr4 10775459 10775525 -144854595 - PB1D10 SINE Alu -51 66 1 3 667 479 279 38 25 chr4 10776290 10776448 -144853672 + RSINE1 SINE B4 3 162 -3 3 667 21 0 0 0 chr4 10776448 10776469 -144853651 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 679 251 218 24 chr4 10777868 10778405 -144851715 + Lx7 LINE L1 5429 6083 -1613 3 667 396 0 0 0 chr4 10778506 10778550 -144851570 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 667 326 240 0 0 chr4 10778570 10778645 -144851475 + B4A SINE B4 2 76 -216 3 667 1659 26 0 16 chr4 10779326 10779518 -144850602 + B2_Mm1t SINE B2 2 190 -3 3 667 408 250 78 0 chr4 10779521 10779637 -144850483 + L1M4c LINE L1 13 137 -6247 3 667 1597 147 99 9 chr4 10780240 10780489 -144849631 + ORR1B1 LTR MaLR 1 278 -116 3 667 1443 83 213 101 chr4 10780489 10780785 -144849335 - ORR1A4 LTR MaLR 0 329 1 3 667 1597 147 99 9 chr4 10780785 10780859 -144849261 + ORR1B1 LTR MaLR 279 352 -42 3 667 405 55 0 0 chr4 10782859 10782914 -144847206 + ORR1B1 LTR MaLR 340 394 0 3 667 580 288 30 20 chr4 10783073 10783275 -144846845 + MLT1C LTR MaLR 221 424 -43 3 667 334 206 44 0 chr4 10784726 10784794 -144845326 + ID4 SINE ID 2 72 -11 3 667 859 112 22 0 chr4 10786860 10786994 -144843126 + B2_Mm2 SINE B2 1 137 -58 3 667 1570 243 77 133 chr4 10787089 10788287 -144841833 - RMER17C-int LTR ERVK -1932 1306 214 3 667 1653 163 102 34 chr4 10788419 10788801 -144841319 - RMER17C LTR ERVK 0 410 3 3 667 765 75 0 0 chr4 10788804 10788911 -144841209 + ORR1A4 LTR MaLR 223 329 0 3 667 1394 195 97 2 chr4 10788915 10789331 -144840789 + Lx7 LINE L1 5424 5919 -1777 3 667 10461 140 48 12 chr4 10789334 10789369 -144840751 + Lx LINE L1 4027 4061 -1822 3 667 233 53 53 0 chr4 10789369 10789407 -144840713 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 3 667 10461 136 39 17 chr4 10789407 10791944 -144838176 + Lx LINE L1 4062 6649 -5 3 667 1641 146 80 30 chr4 10791993 10792332 -144837788 - ORR1C1 LTR MaLR -22 356 1 3 667 2882 36 0 3 chr4 10792479 10792817 -144837303 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 667 21504 14 2 0 chr4 10792817 10795178 -144834942 - IAPEz-int LTR ERVK 0 6481 4117 3 667 3107 18 0 0 chr4 10795170 10795512 -144834608 - IAPEz-int LTR ERVK -2896 3585 3244 3 667 22162 35 40 14 chr4 10795504 10798180 -144831940 - IAPEz-int LTR ERVK -3730 2751 8 3 667 2882 36 0 3 chr4 10798180 10798518 -144831602 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 667 899 237 24 5 chr4 10798518 10798726 -144831394 + Lx7 LINE L1 6103 6314 -1382 3 667 619 213 24 0 chr4 10798749 10798876 -144831244 - B3A SINE B2 -67 131 2 3 667 216 0 0 0 chr4 10798881 10798905 -144831215 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 667 1180 55 7 0 chr4 10798909 10799054 -144831066 - B1_Mus1 SINE Alu -1 147 2 3 667 539 269 27 7 chr4 10799401 10799551 -144830569 - B3A SINE B2 -45 153 1 3 667 230 291 0 0 chr4 10799752 10799807 -144830313 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 667 351 0 0 0 chr4 10800299 10800338 -144829782 + (A)n Simple_repeat Simple_repeat 1 39 0 3 667 281 245 9 81 chr4 10800555 10800666 -144829454 + PB1D10 SINE Alu 6 108 -9 3 667 206 62 31 0 chr4 10800694 10800726 -144829394 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 3 667 203 328 0 0 chr4 10800966 10801027 -144829093 + C-rich Low_complexity Low_complexity 1 61 0 3 667 751 0 0 0 chr4 10801210 10801292 -144828828 + tRNA-Ser-TCY tRNA tRNA 1 82 -3 3 667 25 31 0 0 chr4 10801971 10802003 -144828117 + GC_rich Low_complexity Low_complexity 1 32 0 3 667 543 69 0 0 chr4 10803300 10803372 -144826748 + B1_Mur4 SINE Alu 72 143 -7 3 667 310 299 57 64 chr4 10803777 10803934 -144826186 + MER20 DNA MER1_type 64 219 0 3 667 208 293 85 0 chr4 10804338 10804420 -144825700 + MIR SINE MIR 67 155 -107 3 667 324 0 0 0 chr4 10804448 10804484 -144825636 + (T)n Simple_repeat Simple_repeat 1 36 0 3 667 269 243 0 125 chr4 10804513 10804593 -144825527 - ID4_ SINE ID -12 71 2 4 667 7856 62 9 2 chr4 10804747 10805833 -144824287 - L1Md_F2 LINE L1 -9 6573 5481 4 667 1035 92 28 0 chr4 10806463 10806605 -144823515 - B1_Mm SINE Alu -1 146 1 4 667 399 300 45 0 chr4 10807548 10807658 -144822462 - PB1 SINE Alu -12 115 1 4 667 29 28 0 0 chr4 10807662 10807698 -144822422 + AT_rich Low_complexity Low_complexity 1 36 0 4 667 352 241 8 87 chr4 10809770 10809897 -144820223 + PB1D10 SINE Alu 1 117 0 4 667 22 0 0 0 chr4 10810302 10810324 -144819796 + AT_rich Low_complexity Low_complexity 1 22 0 4 667 431 300 15 23 chr4 10811699 10811832 -144818288 + RSINE1 SINE B4 5 136 -29 4 667 606 254 8 0 chr4 10811876 10812010 -144818110 + B1F SINE Alu 3 137 -12 4 667 305 0 50 0 chr4 10812197 10812237 -144817883 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 667 608 225 8 0 chr4 10812245 10812365 -144817755 - ID_B1 SINE B4 -20 204 84 4 667 3309 68 23 170 chr4 10812635 10812697 -144817423 - RLTR1B LTR ERV1 0 512 439 4 667 240 35 0 0 chr4 10812697 10812726 -144817394 + (CAGAA)n Simple_repeat Simple_repeat 3 31 0 4 667 3309 68 23 170 chr4 10812726 10813263 -144816857 - RLTR1B LTR ERV1 -74 438 2 4 667 10820 39 89 102 chr4 10813263 10814903 -144815217 - RLTR1B-int LTR ERV1 0 3299 1682 4 667 5091 99 75 20 chr4 10814898 10815768 -144814352 - RLTR1B-int LTR ERV1 -1737 1562 783 4 667 1272 191 133 62 chr4 10815879 10816359 -144813761 - RLTR1B-int LTR ERV1 -2522 777 264 4 667 1791 102 25 112 chr4 10816330 10816888 -144813232 - RLTR1B-int LTR ERV1 -3204 494 1 4 667 3837 58 16 84 chr4 10816888 10817437 -144812683 - RLTR1B LTR ERV1 0 512 1 4 667 230 269 0 0 chr4 10817655 10817707 -144812413 + Tigger5 DNA MER2_type 2349 2400 -6 4 667 23 0 0 0 chr4 10818128 10818151 -144811969 + AT_rich Low_complexity Low_complexity 1 23 0 4 667 535 207 138 0 chr4 10818588 10818704 -144811416 - ID_B1 SINE B4 -9 215 84 4 667 306 164 0 0 chr4 10819067 10819122 -144810998 + C-rich Low_complexity Low_complexity 2 56 0 4 667 1096 112 6 11 chr4 10819127 10819308 -144810812 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 667 211 303 29 29 chr4 10819653 10819789 -144810331 + L2a LINE L2 3138 3273 -153 4 667 619 255 49 7 chr4 10820110 10820252 -144809868 - B1_Mur1 SINE Alu 0 149 2 4 667 214 128 0 41 chr4 10821216 10821265 -144808855 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 4 667 222 186 0 0 chr4 10821478 10821521 -144808599 + PB1D10 SINE Alu 35 77 -40 4 667 218 270 63 0 chr4 10821946 10822009 -144808111 - ID SINE ID -154 70 4 4 667 236 286 59 12 chr4 10822131 10822146 -144807974 + B4 SINE B4 70 156 -134 4 667 337 176 44 0 chr4 10822146 10822214 -144807906 + B1_Mur4 SINE Alu 3 73 -77 4 667 462 181 0 0 chr4 10822580 10822663 -144807457 + B1_Mur4 SINE Alu 68 150 0 4 667 373 322 26 0 chr4 10822774 10822889 -144807231 - B1_Mm SINE Alu -28 119 2 4 667 234 328 16 0 chr4 10826333 10826394 -144803726 + tRNA-Ala-GCA tRNA tRNA 3 64 -11 4 667 387 0 0 0 chr4 10826758 10826801 -144803319 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 667 400 266 0 11 chr4 10826894 10826989 -144803131 + B1_Mus2 SINE Alu 1 94 -53 4 667 629 86 55 0 chr4 10827232 10827360 -144802760 + (TC)n Simple_repeat Simple_repeat 2 136 0 4 667 250 205 67 78 chr4 10827392 10827408 -144802712 + Charlie1a DNA MER1_type 259 274 -1181 4 667 3003 68 0 0 chr4 10827408 10827792 -144802328 - L1Md_F2 LINE L1 0 6582 6199 4 667 250 205 67 78 chr4 10827792 10827865 -144802255 + Charlie1a DNA MER1_type 275 347 -1108 4 667 8979 144 71 18 chr4 10827913 10828896 -144801224 - L1_Mur3 LINE L1 -2790 3090 2074 4 667 360 0 0 0 chr4 10828896 10828936 -144801184 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 667 8979 135 67 14 chr4 10828936 10829785 -144800335 - L1_Mur3 LINE L1 -3807 2073 1159 4 667 1163 112 6 0 chr4 10829786 10829965 -144800155 - B2_Mm1t SINE B2 -3 190 11 4 667 1915 117 72 12 chr4 10829970 10830290 -144799830 - L1_Mur3 LINE L1 -6571 1157 819 4 667 522 0 0 0 chr4 10831068 10831126 -144798994 + (AATAG)n Simple_repeat Simple_repeat 4 61 0 4 667 540 82 18 35 chr4 10831257 10831275 -144798845 + (TCTCTG)n Simple_repeat Simple_repeat 2 18 0 4 667 897 123 0 0 chr4 10831275 10831454 -144798666 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 667 540 82 18 35 chr4 10831454 10831549 -144798571 + (TCTCTG)n Simple_repeat Simple_repeat 3 97 0 4 667 239 133 0 22 chr4 10831684 10831730 -144798390 + GA-rich Low_complexity Low_complexity 2 46 0 4 667 990 144 60 6 chr4 10831755 10831937 -144798183 - RMER17C-int LTR ERVK -1562 1676 1485 4 667 260 93 93 0 chr4 10831966 10832009 -144798111 - RMER17C-int LTR ERVK -1894 1344 1298 4 667 2144 179 169 58 chr4 10832863 10833516 -144796604 - RMER17C-int LTR ERVK -2512 726 2 4 667 1242 41 7 0 chr4 10833531 10833677 -144796443 + B1_Mus2 SINE Alu 1 147 0 4 667 860 193 34 59 chr4 10833683 10834007 -144796113 - RMER17C LTR ERVK -14 396 81 4 667 717 202 29 5 chr4 10834009 10834398 -144795722 + GA-rich Low_complexity Low_complexity 1 398 0 4 667 801 73 60 12 chr4 10834398 10834484 -144795636 + (GGAGAA)n Simple_repeat Simple_repeat 6 95 0 4 667 1308 79 0 0 chr4 10834484 10834662 -144795458 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 4 667 801 73 60 12 chr4 10834662 10834741 -144795379 + (GGAGAA)n Simple_repeat Simple_repeat 6 88 0 4 667 339 141 0 45 chr4 10834741 10834808 -144795312 + GA-rich Low_complexity Low_complexity 1 64 0 4 667 866 214 76 57 chr4 10834808 10834911 -144795209 - RMER17C LTR ERVK -157 253 208 4 667 1116 96 0 17 chr4 10834911 10835091 -144795029 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 4 667 866 189 112 26 chr4 10835091 10835274 -144794846 - RMER17C LTR ERVK -203 207 1 4 667 621 296 35 0 chr4 10835733 10835905 -144794215 - B3 SINE B2 -37 179 2 4 667 542 277 187 39 chr4 10835958 10836401 -144793719 + Charlie1a DNA MER1_type 439 1022 -433 4 667 1129 146 0 51 chr4 10836407 10836441 -144793679 + B2_Mm2 SINE B2 2 26 -169 4 667 1529 52 21 0 chr4 10836441 10836632 -144793488 + B2_Mm2 SINE B2 1 195 0 4 667 1129 146 0 51 chr4 10836632 10836792 -144793328 + B2_Mm2 SINE B2 27 185 -10 4 667 924 242 128 63 chr4 10836784 10837143 -144792977 + Charlie1a DNA MER1_type 1015 1405 -50 4 667 1410 83 0 6 chr4 10837143 10837325 -144792795 + B2_Mm2 SINE B2 1 181 -14 4 667 924 242 128 63 chr4 10837325 10837379 -144792741 + Charlie1a DNA MER1_type 1406 1455 0 4 667 1168 44 0 0 chr4 10837690 10837825 -144792295 + B1_Mm SINE Alu 1 135 -12 4 667 710 53 11 0 chr4 10837825 10837920 -144792200 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 4 667 445 324 0 9 chr4 10837920 10838032 -144792088 + B4A SINE B4 13 123 -169 4 667 2036 152 113 21 chr4 10838158 10838540 -144791580 - MTC LTR MaLR -4 417 1 4 667 1658 149 53 56 chr4 10838622 10838721 -144791399 - ORR1A3 LTR MaLR -8 318 207 4 667 1114 170 31 126 chr4 10838721 10839077 -144791043 + RLTRETN_Mm LTR ERVK 1 322 0 4 667 1658 149 53 56 chr4 10839077 10839296 -144790824 - ORR1A3 LTR MaLR -120 206 1 4 667 189 0 0 0 chr4 10841065 10841086 -144789034 + (GGGGA)n Simple_repeat Simple_repeat 2 22 0 4 667 216 337 40 30 chr4 10841308 10841409 -144788711 - MIR3 SINE MIR -11 197 96 4 667 2380 123 80 13 chr4 10841668 10842055 -144788065 - MTC LTR MaLR -8 413 1 4 667 543 283 43 0 chr4 10842191 10842329 -144787791 - RSINE1 SINE B4 -20 145 2 4 667 273 119 0 0 chr4 10842461 10842503 -144787617 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 667 3504 28 2 0 chr4 10842662 10843057 -144787063 - MTA_Mm LTR MaLR 0 396 1 4 667 321 288 16 119 chr4 10843286 10843317 -144786803 - MLT1K LTR MaLR -77 518 495 4 667 1557 150 78 111 chr4 10843317 10843714 -144786406 + ORR1C2 LTR MaLR 1 384 0 4 667 533 291 238 54 chr4 10843714 10844070 -144786050 - MLT1K LTR MaLR -101 494 69 4 667 663 285 11 11 chr4 10844263 10844444 -144785676 + B3 SINE B2 6 186 -30 4 667 269 410 0 12 chr4 10844450 10844794 -144785326 + (CATA)n Simple_repeat Simple_repeat 1 340 0 4 667 288 399 0 11 chr4 10844682 10844862 -144785258 + (CAGG)n Simple_repeat Simple_repeat 1 178 0 4 667 281 408 0 0 chr4 10844814 10844983 -144785137 + (CATA)n Simple_repeat Simple_repeat 3 171 0 4 667 216 399 25 0 chr4 10844968 10845126 -144784994 + (CAGG)n Simple_repeat Simple_repeat 1 162 0 4 667 396 342 13 0 chr4 10845048 10845206 -144784914 + (CATA)n Simple_repeat Simple_repeat 3 162 0 4 667 307 304 25 34 chr4 10845227 10845346 -144784774 + PB1D7 SINE Alu 1 118 -2 4 667 319 280 54 39 chr4 10847298 10847428 -144782692 - LTR85b LTR Gypsy? -606 178 47 4 667 353 307 30 0 chr4 10847775 10847876 -144782244 - MIR SINE MIR -75 187 84 4 667 1880 155 135 35 chr4 10847898 10848282 -144781838 + ORR1B2 LTR MaLR 1 357 -22 4 667 869 246 192 32 chr4 10848277 10848558 -144781562 + MTE2a LTR MaLR 54 379 0 4 667 417 269 86 0 chr4 10848600 10848693 -144781427 + PB1D10 SINE Alu 1 101 -16 4 667 271 147 29 14 chr4 10848706 10848775 -144781345 + GA-rich Low_complexity Low_complexity 4 73 0 4 667 355 299 74 9 chr4 10849413 10849521 -144780599 - B1F1 SINE Alu 0 117 3 4 667 330 311 29 10 chr4 10849431 10849535 -144780585 - ID_B1 SINE B4 -49 175 70 4 667 387 273 127 67 chr4 10849679 10850009 -144780111 + RMER10A LTR ERVL 15 364 -78 4 667 307 261 74 68 chr4 10850001 10850149 -144779971 + RMER10A LTR ERVL 270 418 -24 4 667 244 313 48 0 chr4 10850234 10850317 -144779803 - L2b LINE L2 0 3375 3289 4 667 3825 90 56 42 chr4 10851684 10852275 -144777845 + MT2B LTR ERVL 1 599 -2 4 667 290 326 48 28 chr4 10852282 10852427 -144777693 + L2 LINE L2 2596 2743 -676 4 667 621 148 43 0 chr4 10852472 10852587 -144777533 - B1_Mur4 SINE Alu -1 149 30 4 667 528 256 0 53 chr4 10852583 10852811 -144777309 - MTD LTR MaLR -60 359 82 4 667 2161 143 77 13 chr4 10853575 10853965 -144776155 - MTC LTR MaLR -3 418 4 4 667 259 221 88 88 chr4 10853970 10854016 -144776104 - B1F SINE Alu -34 115 67 4 667 1045 66 59 0 chr4 10854016 10854152 -144775968 + B1_Mus2 SINE Alu 4 147 0 4 667 259 221 88 88 chr4 10854152 10854219 -144775901 - B1F SINE Alu -83 66 2 4 667 781 193 29 0 chr4 10854612 10854752 -144775368 - B1_Mur4 SINE Alu -5 145 2 4 667 263 260 126 81 chr4 10855047 10855294 -144774826 + RMER17C LTR ERVK 48 305 -105 4 667 2179 186 53 36 chr4 10855279 10855795 -144774325 - RMER19C LTR ERVK -10 601 5 4 667 1238 189 230 7 chr4 10856207 10856370 -144773750 + ORR1D1 LTR MaLR 1 176 -198 4 667 279 0 0 0 chr4 10856370 10856401 -144773719 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 667 1238 189 230 7 chr4 10856401 10856541 -144773579 + ORR1D1 LTR MaLR 177 372 -2 4 667 725 251 52 35 chr4 10856959 10857190 -144772930 - RLTR42-int LTR ERVK -1283 4239 4005 4 667 301 281 0 63 chr4 10857261 10857356 -144772764 - RLTR42-int LTR ERVK -2550 2972 2884 4 667 640 261 35 65 chr4 10857385 10857586 -144772534 + B3A SINE B2 2 196 -2 4 667 249 235 29 14 chr4 10857857 10857926 -144772194 - MLT1C LTR MaLR -81 424 355 4 667 281 268 65 80 chr4 10858031 10858169 -144771951 - MLT1C LTR MaLR -327 140 5 4 667 441 0 0 0 chr4 10858888 10858937 -144771183 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 667 525 83 0 0 chr4 10858937 10859021 -144771099 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 667 565 217 43 124 chr4 10859272 10859297 -144770823 - B2_Mm2 SINE B2 -1 194 169 5 667 408 97 0 0 chr4 10859297 10859359 -144770761 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 667 891 217 43 124 chr4 10859359 10859543 -144770577 - B3 SINE B2 -27 189 2 5 667 279 0 0 0 chr4 10860436 10860467 -144769653 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 667 1118 81 0 0 chr4 10860467 10860603 -144769517 - B1_Mus2 SINE Alu -11 136 1 5 667 207 388 208 14 chr4 10860633 10860926 -144769194 - L4 LINE RTE -395 1634 1285 5 667 193 242 43 43 chr4 10861023 10861092 -144769028 - L2 LINE L2 -3163 256 188 5 667 192 125 0 0 chr4 10861352 10861384 -144768736 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 5 667 3934 113 36 18 chr4 10861601 10862684 -144767436 + RLTR13D1 LTR ERVK 1 822 0 5 667 796 143 7 15 chr4 10862687 10862822 -144767298 + ETnERV3-int LTR ERVK 3 136 -5672 5 667 389 180 231 51 chr4 10862842 10862959 -144767161 - MTEa LTR MaLR -76 303 166 5 667 644 220 35 7 chr4 10862982 10863124 -144766996 + B1_Mus2 SINE Alu 1 146 -1 5 667 188 35 35 0 chr4 10863124 10863153 -144766967 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 667 330 291 171 16 chr4 10863198 10863327 -144766793 - B4 SINE B4 -18 274 126 5 667 442 289 23 0 chr4 10863403 10863531 -144766589 - MTEa LTR MaLR -248 131 1 5 667 396 0 0 0 chr4 10864493 10864537 -144765583 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 667 1107 87 7 0 chr4 10864540 10864690 -144765430 - B2_Mm2 SINE B2 -42 153 3 5 667 349 275 134 22 chr4 10864760 10864894 -144765226 - B1F2 SINE Alu 0 149 1 5 667 204 204 0 75 chr4 10864894 10864937 -144765183 - L2b LINE L2 -14 3361 3322 5 667 181 310 35 0 chr4 10864978 10865036 -144765084 + MIRb SINE MIR 201 260 -8 5 667 453 303 57 32 chr4 10865107 10865264 -144764856 - RSINE1 SINE B4 -2 163 3 5 667 321 247 14 0 chr4 10865429 10865502 -144764618 + ID SINE ID 8 81 -143 5 667 524 217 61 23 chr4 10865603 10865735 -144764385 + MTD LTR MaLR 271 407 -12 5 667 2324 213 47 43 chr4 10865749 10866333 -144763787 + MTD-int LTR MaLR 7 528 -730 5 667 262 277 45 15 chr4 10866335 10866401 -144763719 + MTD-int LTR MaLR 1107 1174 -789 5 667 302 241 77 44 chr4 10866373 10866464 -144763656 + MTC-int LTR MaLR 435 528 -730 5 667 294 224 0 33 chr4 10866462 10866522 -144763598 + MTC-int LTR MaLR 463 520 -738 5 667 286 268 47 47 chr4 10866499 10866585 -144763535 + MTC-int LTR MaLR 435 520 -738 5 667 284 264 77 44 chr4 10866562 10866653 -144763467 + MTC-int LTR MaLR 435 528 -730 5 667 302 241 77 44 chr4 10866625 10866716 -144763404 + MTC-int LTR MaLR 435 528 -730 5 667 263 292 0 27 chr4 10866700 10866774 -144763346 + MTC-int LTR MaLR 1095 1166 -797 5 667 2171 232 133 126 chr4 10866751 10867697 -144762423 + MTD-int LTR MaLR 435 1255 -3 5 667 2053 184 75 0 chr4 10867700 10868086 -144762034 + MTD LTR MaLR 1 415 -4 5 667 231 303 77 62 chr4 10869748 10869878 -144760242 + MLT1D LTR MaLR 54 185 -320 5 667 305 343 36 22 chr4 10869945 10870082 -144760038 + MLT1D LTR MaLR 355 493 -12 5 667 183 303 182 0 chr4 10870117 10870183 -144759937 - L2a LINE L2 -4 3422 3345 5 667 510 31 0 0 chr4 10870984 10871048 -144759072 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 667 323 253 39 0 chr4 10871069 10871169 -144758951 + PB1D7 SINE Alu 3 110 -10 5 667 243 98 0 0 chr4 10871310 10871329 -144758791 + (A)n Simple_repeat Simple_repeat 1 19 0 5 667 1180 75 0 0 chr4 10871329 10871476 -144758644 + B1_Mus1 SINE Alu 2 148 0 5 667 243 98 0 0 chr4 10871476 10871497 -144758623 + (A)n Simple_repeat Simple_repeat 1 21 0 5 667 4502 196 64 20 chr4 10871504 10873432 -144756688 - Lx6 LINE L1 -27 7433 5284 5 667 321 26 0 0 chr4 10873437 10873475 -144756645 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 5 667 1104 45 0 0 chr4 10873475 10873609 -144756511 - B1_Mm SINE Alu -3 144 11 5 667 646 174 14 55 chr4 10873478 10873624 -144756496 - ID_B1 SINE B4 -6 218 79 5 667 484 137 32 0 chr4 10873624 10873719 -144756401 - Lx6 LINE L1 -598 5282 5185 5 667 2036 141 49 0 chr4 10874277 10874625 -144755495 - Lx6 LINE L1 -686 5194 4830 5 667 1127 278 73 58 chr4 10874625 10875364 -144754756 + RLTR18 LTR ERVK 1 616 0 5 667 9942 160 98 203 chr4 10875364 10876967 -144753153 - L1_Mur3 LINE L1 -1046 4834 3120 5 667 216 0 0 0 chr4 10876967 10876991 -144753129 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 667 9942 160 98 203 chr4 10876991 10877158 -144752962 - L1_Mur3 LINE L1 -2761 3119 2981 5 667 1766 10 0 0 chr4 10877158 10877350 -144752770 + B2_Mm1a SINE B2 2 193 0 5 667 9942 160 98 203 chr4 10877350 10877735 -144752385 - L1_Mur3 LINE L1 -2900 2980 2571 5 667 2809 65 22 5 chr4 10877735 10878104 -144752016 - MTA_Mm LTR MaLR 0 396 22 5 667 9942 160 98 203 chr4 10878104 10878890 -144751230 - L1_Mur3 LINE L1 -2900 2570 1730 5 667 231 36 0 0 chr4 10878890 10878918 -144751202 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 667 9942 155 68 104 chr4 10878918 10878970 -144751150 - L1_Mur3 LINE L1 -4151 1729 1680 5 83 1167 41 7 0 chr4 10878970 10879115 -144751005 - B1_Mm SINE Alu 0 147 2 5 668 442 235 16 94 chr4 10879004 10879131 -144750989 - MT2B LTR ERVL -337 264 148 5 668 9942 155 68 104 chr4 10879131 10880200 -144749920 - L1_Mur3 LINE L1 -4151 1679 638 5 668 1039 186 74 5 chr4 10880202 10880418 -144749702 - L1_Mur3 LINE L1 -7442 286 56 5 668 419 237 71 20 chr4 10880591 10880690 -144749430 + MER77 LTR ERVL 96 199 -408 5 668 571 231 0 18 chr4 10881079 10881189 -144748931 - PB1D7 SINE Alu 0 120 13 5 668 394 326 23 23 chr4 10881289 10881421 -144748699 - B1F1 SINE Alu 0 149 18 5 668 233 374 0 0 chr4 10881445 10881544 -144748576 - Charlie4a DNA MER1_type -203 305 207 5 668 634 228 0 69 chr4 10881626 10881786 -144748334 + B1_Mur2 SINE Alu 1 149 0 5 668 189 0 0 0 chr4 10881786 10881807 -144748313 + (A)n Simple_repeat Simple_repeat 1 21 0 5 668 242 29 0 28 chr4 10881841 10881877 -144748243 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 668 954 91 0 0 chr4 10881877 10881998 -144748122 - B1_Mus2 SINE Alu -9 138 18 5 668 439 190 27 91 chr4 10881913 10882023 -144748097 - MT2B LTR ERVL -344 257 155 5 668 308 320 54 10 chr4 10882687 10882841 -144747279 - MLT1E1 LTR MaLR -8 646 531 5 668 271 279 134 34 chr4 10882896 10883089 -144747031 - MLT1E1 LTR MaLR -289 216 9 5 668 887 290 106 7 chr4 10883308 10883582 -144746538 - MTE2a LTR MaLR -64 315 15 5 668 210 150 0 0 chr4 10883934 10883974 -144746146 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 668 1241 183 32 5 chr4 10884067 10884286 -144745834 + URR1B DNA MER1_type 1 225 0 5 668 736 241 64 137 chr4 10884359 10884572 -144745548 + B4 SINE B4 3 213 -79 5 668 811 279 94 19 chr4 10884572 10884839 -144745281 + B4A SINE B4 5 291 -1 5 668 736 241 64 137 chr4 10884839 10884864 -144745256 + B4 SINE B4 214 222 -70 5 668 186 43 0 0 chr4 10884864 10884887 -144745233 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 668 736 241 64 137 chr4 10884887 10884960 -144745160 + B4 SINE B4 223 292 0 5 668 393 22 0 0 chr4 10884973 10885019 -144745101 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 668 3632 15 0 0 chr4 10885025 10885421 -144744699 - MTA_Mm LTR MaLR 0 396 1 5 668 8830 50 7 2 chr4 10885421 10886513 -144743607 - MTA_Mm-int LTR MaLR 0 1098 1 5 668 3608 18 0 0 chr4 10886513 10886909 -144743211 - MTA_Mm LTR MaLR 0 396 1 5 668 342 178 110 0 chr4 10887143 10887216 -144742904 - ID_B1 SINE B4 -6 218 138 5 668 652 207 199 79 chr4 10888649 10888890 -144741230 + B4A SINE B4 1 270 -22 5 668 204 362 124 0 chr4 10889512 10889617 -144740503 - MIRb SINE MIR -147 121 4 5 668 369 246 217 49 chr4 10890064 10890248 -144739872 + ID_B1 SINE B4 3 217 -7 5 668 223 234 21 0 chr4 10890256 10890303 -144739817 + GA-rich Low_complexity Low_complexity 4 51 0 5 668 1445 53 26 11 chr4 10890352 10890543 -144739577 + B2_Mm2 SINE B2 1 194 -1 5 668 233 305 60 12 chr4 10891208 10891291 -144738829 + B1F SINE Alu 42 128 -21 5 668 1191 34 0 26 chr4 10891307 10891458 -144738662 + B1_Mm SINE Alu 1 147 0 5 668 468 184 47 28 chr4 10892442 10892548 -144737572 - PB1D10 SINE Alu 0 117 10 5 668 1407 181 275 89 chr4 10892811 10893241 -144736879 - RLTR18B LTR ERVK -2 510 1 5 668 674 202 0 0 chr4 10893258 10893377 -144736743 + B1F SINE Alu 11 129 -20 5 668 1074 194 44 0 chr4 10893473 10893679 -144736441 - B3 SINE B2 0 216 2 5 668 684 296 52 48 chr4 10893689 10893959 -144736161 - L1MC1 LINE L1 -19 6314 6044 5 668 373 242 30 20 chr4 10893969 10894070 -144736050 - MLT2B3 LTR ERVL -424 130 29 5 668 249 275 0 24 chr4 10894672 10894754 -144735366 - ID4 SINE ID 0 83 4 5 668 375 336 18 0 chr4 10894767 10894877 -144735243 - B1_Mur1 SINE Alu -37 112 1 5 668 256 294 157 0 chr4 10895659 10895761 -144734359 - ID_B1 SINE B4 -18 206 89 5 668 238 235 14 42 chr4 10895829 10895900 -144734220 - L1MC1 LINE L1 -916 5396 5328 5 668 2004 139 24 3 chr4 10895997 10896328 -144733792 - ORR1A0 LTR MaLR -8 338 1 5 668 537 229 7 41 chr4 10896334 10896480 -144733640 + ID_B1 SINE B4 43 183 -41 5 668 360 0 0 0 chr4 10896700 10896740 -144733380 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 668 800 186 0 7 chr4 10896758 10896899 -144733221 - B1_Mur1 SINE Alu -9 140 1 5 668 331 206 118 27 chr4 10897071 10897181 -144732939 + PB1D7 SINE Alu 1 120 0 5 668 331 333 56 0 chr4 10897434 10897542 -144732578 + Tigger16a DNA Tigger 768 881 -52 5 668 226 173 195 26 chr4 10897653 10897730 -144732390 - MER45B DNA Tip100 0 1040 951 5 668 264 255 147 0 chr4 10897781 10897883 -144732237 - B1F SINE Alu -1 148 32 5 668 1395 85 16 11 chr4 10897908 10898099 -144732021 - B2_Mm2 SINE B2 -2 193 2 5 668 23 54 0 0 chr4 10898121 10898158 -144731962 + AT_rich Low_complexity Low_complexity 1 37 0 5 668 447 277 48 62 chr4 10898314 10898460 -144731660 - ID_B1 SINE B4 0 224 81 5 668 788 220 79 10 chr4 10898680 10898882 -144731238 + B3 SINE B2 1 216 0 5 668 1056 42 40 66 chr4 10898905 10899057 -144731063 + B1_Mus1 SINE Alu 1 148 0 5 668 213 121 0 0 chr4 10899057 10899090 -144731030 + (GAA)n Simple_repeat Simple_repeat 1 33 0 5 668 510 61 0 0 chr4 10899092 10899158 -144730962 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 5 668 670 216 155 0 chr4 10899172 10899366 -144730754 + MTD LTR MaLR 196 419 0 5 668 810 121 0 0 chr4 10899434 10899591 -144730529 + (TC)n Simple_repeat Simple_repeat 1 157 0 5 668 332 267 0 53 chr4 10899637 10899732 -144730388 - PB1D10 SINE Alu -27 90 1 5 668 299 276 18 62 chr4 10900681 10900793 -144729327 + PB1D10 SINE Alu 4 110 -7 5 668 691 220 187 0 chr4 10900811 10901020 -144729100 + MTD LTR MaLR 171 418 -1 5 668 559 266 50 31 chr4 10901137 10901296 -144728824 + RSINE1 SINE B4 3 164 -1 5 668 453 19 0 0 chr4 10901314 10901368 -144728752 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 5 668 189 0 0 0 chr4 10902071 10902092 -144728028 + (GGTTG)n Simple_repeat Simple_repeat 2 22 0 6 668 609 266 32 42 chr4 10902092 10902308 -144727812 - ID_B1 SINE B4 -10 214 1 6 668 510 223 8 24 chr4 10902480 10902604 -144727516 - ID_B1 SINE B4 0 224 103 6 668 306 106 0 0 chr4 10902605 10902652 -144727468 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 668 1303 126 16 5 chr4 10902702 10902893 -144727227 + B2_Mm2 SINE B2 3 195 0 6 668 1683 201 65 23 chr4 10903823 10904220 -144725900 + MTC LTR MaLR 7 420 -1 6 668 474 284 0 33 chr4 10904361 10904481 -144725639 - PB1D10 SINE Alu -1 116 1 6 668 225 152 0 21 chr4 10904665 10904712 -144725408 + L2a LINE L2 3339 3384 -42 6 668 1173 62 0 0 chr4 10904732 10904877 -144725243 + B1_Mus1 SINE Alu 4 148 0 6 668 198 0 0 0 chr4 10904877 10904899 -144725221 + (A)n Simple_repeat Simple_repeat 1 22 0 6 668 530 65 10 42 chr4 10905640 10905736 -144724384 - B2_Mm2 SINE B2 -7 188 96 6 668 405 200 73 45 chr4 10905687 10905797 -144724323 - B1_Mur4 SINE Alu -37 113 1 6 668 625 277 7 0 chr4 10905842 10905983 -144724137 + RSINE1 SINE B4 11 152 -13 6 668 183 42 0 0 chr4 10905987 10906011 -144724109 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 668 764 190 0 21 chr4 10906061 10906206 -144723914 - B1_Mur2 SINE Alu -1 148 7 6 668 463 289 135 28 chr4 10906226 10906463 -144723657 + L1_Mur3 LINE L1 5086 5361 -519 6 668 1176 62 7 0 chr4 10906463 10906608 -144723512 + B1_Mus1 SINE Alu 1 146 -2 6 668 450 0 0 0 chr4 10906617 10906667 -144723453 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 668 463 289 135 28 chr4 10906667 10906842 -144723278 + L1_Mur3 LINE L1 5369 5553 -327 6 668 926 145 7 0 chr4 10906925 10907070 -144723050 + B1_Mur3 SINE Alu 2 147 -2 6 668 808 250 83 8 chr4 10907102 10907356 -144722764 + L1_Rod LINE L1 5535 5807 -40 6 668 550 182 6 194 chr4 10907446 10907616 -144722504 + B1_Mur1 SINE Alu 3 140 -9 6 668 206 242 16 16 chr4 10907618 10907681 -144722439 + GA-rich Low_complexity Low_complexity 2 64 0 6 668 327 25 0 0 chr4 10907853 10907893 -144722227 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 668 366 261 107 25 chr4 10908613 10908735 -144721385 + B1F SINE Alu 11 142 -7 6 668 462 215 56 0 chr4 10908751 10908858 -144721262 + PB1D9 SINE Alu 2 114 -6 6 668 1203 49 0 0 chr4 10909053 10909195 -144720925 - B1_Mus2 SINE Alu -5 142 1 6 668 1343 71 55 0 chr4 10909218 10909400 -144720720 + B2_Mm1t SINE B2 2 193 0 6 668 376 282 81 0 chr4 10909430 10909554 -144720566 + RSINE1 SINE B4 11 144 -21 6 668 447 68 0 0 chr4 10909578 10909637 -144720483 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 668 460 217 36 45 chr4 10909848 10909959 -144720161 + B1F SINE Alu 3 112 -37 6 668 382 264 68 30 chr4 10909997 10910130 -144719990 + ID_B1 SINE B4 86 223 -1 6 668 845 167 161 0 chr4 10910372 10910558 -144719562 + B3 SINE B2 1 216 0 6 668 254 330 48 0 chr4 10910603 10910706 -144719414 + PB1D10 SINE Alu 1 108 -9 6 668 1305 20 0 0 chr4 10910761 10910909 -144719211 + B1_Mus1 SINE Alu 1 148 0 6 668 953 62 8 0 chr4 10911115 10911245 -144718875 + B1_Mus1 SINE Alu 13 143 -5 6 668 211 125 62 0 chr4 10911245 10911293 -144718827 + A-rich Low_complexity Low_complexity 2 52 0 6 668 756 168 18 6 chr4 10911303 10911471 -144718649 + CT-rich Low_complexity Low_complexity 4 173 0 6 668 1440 198 87 57 chr4 10911886 10912085 -144718035 - MTC LTR MaLR -5 416 200 6 668 3499 65 0 0 chr4 10912085 10912515 -144717605 - L1_Mus1 LINE L1 0 6567 6138 6 668 1440 198 87 57 chr4 10912515 10912717 -144717403 - MTC LTR MaLR -222 199 3 6 668 239 219 219 0 chr4 10912755 10912851 -144717269 - B3A SINE B2 -18 180 64 6 668 277 323 90 57 chr4 10912873 10913050 -144717070 - B3A SINE B2 -14 184 2 6 668 671 219 168 19 chr4 10913069 10913283 -144716837 - L1M2 LINE L1 -718 5573 5328 6 668 370 209 8 142 chr4 10913632 10913766 -144716354 + PB1D10 SINE Alu 1 116 -1 6 668 261 257 188 0 chr4 10913992 10914093 -144716027 + B3A SINE B2 64 183 -15 6 668 243 0 0 0 chr4 10914134 10914164 -144715956 + MTD LTR MaLR 1 30 -389 6 668 360 0 0 0 chr4 10914181 10914221 -144715899 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 668 315 0 0 0 chr4 10915400 10915435 -144714685 + (A)n Simple_repeat Simple_repeat 1 35 0 6 668 320 222 222 0 chr4 10915479 10915614 -144714506 + ID_B1 SINE B4 2 166 -58 6 668 275 65 0 21 chr4 10916267 10916314 -144713806 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 668 542 192 0 0 chr4 10916782 10916881 -144713239 + B1_Mur3 SINE Alu 43 141 -8 6 668 286 220 98 32 chr4 10918617 10918735 -144711385 - B1F2 SINE Alu -21 126 2 6 668 351 298 26 17 chr4 10919110 10919226 -144710894 - PB1D10 SINE Alu 0 117 1 6 668 439 238 180 0 chr4 10920103 10920225 -144709895 + RSINE1 SINE B4 3 146 -19 6 668 234 0 0 0 chr4 10920365 10920391 -144709729 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 668 1143 88 0 6 chr4 10920391 10920552 -144709568 - B2_Mm2 SINE B2 -34 161 2 6 668 333 291 13 0 chr4 10920707 10920786 -144709334 + RSINE1 SINE B4 3 82 -83 6 668 283 185 57 78 chr4 10921168 10921309 -144708811 + RMER17C LTR ERVK 128 265 -145 6 668 1259 48 0 0 chr4 10921528 10921675 -144708445 + B1_Mm SINE Alu 1 147 0 6 668 217 204 237 41 chr4 10922062 10922159 -144707961 - RSINE1 SINE B4 -35 130 15 6 668 303 230 58 39 chr4 10923170 10923274 -144706846 - PB1D9 SINE Alu -12 108 3 6 668 1074 53 0 0 chr4 10923523 10923654 -144706466 - B1_Mus1 SINE Alu -16 132 2 6 668 531 43 0 0 chr4 10923916 10923986 -144706134 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 668 865 101 7 67 chr4 10924494 10924643 -144705477 + B1_Mur4 SINE Alu 5 144 -6 6 668 545 294 102 0 chr4 10924825 10925012 -144705108 + B3 SINE B2 2 207 -9 6 668 180 0 0 0 chr4 10925167 10925187 -144704933 + (A)n Simple_repeat Simple_repeat 1 20 0 6 668 252 0 0 0 chr4 10925798 10925826 -144704294 + (A)n Simple_repeat Simple_repeat 1 28 0 6 668 798 39 0 0 chr4 10927687 10927790 -144702330 - B1_Mus2 SINE Alu -1 146 44 6 668 627 205 15 36 chr4 10927797 10927934 -144702186 + B1_Mur1 SINE Alu 15 148 -1 6 668 1615 167 242 10 chr4 10928241 10928641 -144701479 - Lx9 LINE L1 -752 6892 6400 6 668 1997 243 69 53 chr4 10928645 10929228 -144700892 + Lx9 LINE L1 6899 7490 -154 6 668 29 60 0 0 chr4 10929301 10929351 -144700769 + AT_rich Low_complexity Low_complexity 1 50 0 6 668 260 324 57 90 chr4 10929496 10929618 -144700502 - RSINE1 SINE B4 -12 153 36 6 668 448 260 40 16 chr4 10929706 10929831 -144700289 + ID_B1 SINE B4 79 206 -18 6 668 599 274 20 0 chr4 10929839 10929985 -144700135 + B3A SINE B2 39 187 -11 6 668 1040 61 1 4 chr4 10930042 10930196 -144699924 + B1_Mus2 SINE Alu 1 150 0 6 668 279 296 132 58 chr4 10930840 10931030 -144699090 - MIRc SINE MIR -46 222 19 6 668 28 0 0 0 chr4 10931134 10931162 -144698958 + GC_rich Low_complexity Low_complexity 1 28 0 6 668 379 242 0 71 chr4 10931296 10931394 -144698726 + ID_B1 SINE B4 127 217 -7 6 668 416 248 73 40 chr4 10931498 10931515 -144698605 + ID_B1 SINE B4 69 161 -63 6 668 603 194 16 8 chr4 10931515 10931640 -144698480 + B1_Mus2 SINE Alu 1 126 -21 6 668 292 206 160 30 chr4 10932358 10932458 -144697662 - PB1D10 SINE Alu 0 117 5 6 668 360 233 77 8 chr4 10932820 10932950 -144697170 + RSINE1 SINE B4 2 140 -25 6 668 309 89 0 0 chr4 10932954 10932999 -144697121 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 668 424 273 40 40 chr4 10933017 10933166 -144696954 + RSINE1 SINE B4 2 150 -15 6 668 383 238 10 11 chr4 10933602 10933728 -144696392 - B1F SINE Alu -29 120 1 6 668 24 85 0 0 chr4 10934403 10934462 -144695658 + GC_rich Low_complexity Low_complexity 1 59 0 6 668 22 0 0 0 chr4 10934543 10934565 -144695555 + GC_rich Low_complexity Low_complexity 1 22 0 6 668 201 164 17 83 chr4 10934808 10934868 -144695252 + (CCCCG)n Simple_repeat Simple_repeat 2 57 0 6 668 752 139 113 0 chr4 10935520 10935671 -144694449 + URR1B DNA MER1_type 53 220 -5 6 668 687 64 294 0 chr4 10935672 10935781 -144694339 + B1_Mus1 SINE Alu 2 142 -6 6 668 219 69 0 0 chr4 10935782 10935811 -144694309 + (GAA)n Simple_repeat Simple_repeat 2 30 0 6 668 922 69 15 0 chr4 10936023 10936153 -144693967 + B1_Mus2 SINE Alu 16 147 0 6 668 231 61 0 0 chr4 10936155 10936188 -144693932 + (A)n Simple_repeat Simple_repeat 1 33 0 6 668 369 281 134 24 chr4 10936236 10936400 -144693720 + MIR SINE MIR 37 218 -44 6 668 241 274 40 40 chr4 10936507 10936606 -144693514 - Charlie7a DNA MER1_type -172 100 2 6 668 1160 69 0 7 chr4 10936857 10937003 -144693117 + B1_Mm SINE Alu 2 146 -1 6 668 2010 114 44 9 chr4 10937218 10937536 -144692584 + ORR1A4 LTR MaLR 1 329 0 6 668 336 286 62 31 chr4 10937796 10937926 -144692194 + ID_B1 SINE B4 88 221 -3 6 668 773 270 16 0 chr4 10937935 10938124 -144691996 + B4A SINE B4 2 193 -99 6 668 720 253 0 53 chr4 10938147 10938318 -144691802 + ID_B1 SINE B4 53 214 -10 6 668 479 265 69 25 chr4 10938342 10938501 -144691619 + L1MC1 LINE L1 5960 6125 -208 6 668 230 196 0 21 chr4 10938514 10938561 -144691559 + ID4 SINE ID 25 70 -13 7 668 272 210 32 0 chr4 10938627 10938726 -144691394 + L1MC1 LINE L1 6248 6333 0 6 668 525 115 0 0 chr4 10939113 10939200 -144690920 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 668 327 189 0 75 chr4 10939342 10939422 -144690698 + B1_Mur1 SINE Alu 75 148 -1 7 668 649 214 53 0 chr4 10939545 10939676 -144690444 + B1_Mus1 SINE Alu 1 138 -10 7 668 182 294 29 29 chr4 10939893 10939963 -144690157 + MIRb SINE MIR 37 106 -162 7 668 395 38 19 0 chr4 10940235 10940288 -144689832 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 668 351 300 61 15 chr4 10940333 10940465 -144689655 - ID_B1 SINE B4 -63 161 24 7 668 328 150 97 0 chr4 10940577 10940660 -144689460 - RLTR25B LTR ERVK 0 1103 939 7 668 189 0 0 0 chr4 10940667 10940688 -144689432 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 668 1447 53 27 0 chr4 10940745 10940933 -144689187 - B2_Mm2 SINE B2 0 195 3 7 668 3396 175 91 21 chr4 10940937 10941686 -144688434 - RLTR25B LTR ERVK -227 801 1 7 668 236 238 16 0 chr4 10941998 10942061 -144688059 - ID4 SINE ID -5 78 15 7 668 241 396 39 10 chr4 10942073 10942175 -144687945 + ID_B1 SINE B4 1 105 -119 7 668 832 109 0 30 chr4 10942199 10942332 -144687788 - B1_Mur4 SINE Alu -20 130 2 7 668 291 246 19 143 chr4 10942332 10942385 -144687735 - MT2B LTR ERVL -452 149 117 7 668 1385 94 21 0 chr4 10942846 10943037 -144687083 - B2_Mm2 SINE B2 0 195 1 7 668 342 0 0 0 chr4 10943293 10943331 -144686789 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 7 668 1153 83 0 0 chr4 10943331 10943476 -144686644 - B1_Mus1 SINE Alu -3 145 1 7 668 304 338 7 62 chr4 10944310 10944392 -144685728 + ID_B1 SINE B4 76 155 -69 7 668 1221 41 7 0 chr4 10944392 10944537 -144685583 + B1_Mus2 SINE Alu 2 147 0 7 668 304 338 7 62 chr4 10944537 10944599 -144685521 + ID_B1 SINE B4 156 212 -12 7 668 243 146 0 0 chr4 10944600 10944641 -144685479 + (GGA)n Simple_repeat Simple_repeat 3 43 0 7 668 412 290 69 42 chr4 10944704 10944848 -144685272 + B1_Mur1 SINE Alu 1 148 -1 7 668 798 203 21 165 chr4 10944859 10945016 -144685104 + B3 SINE B2 2 134 -82 7 668 1184 75 0 0 chr4 10945016 10945162 -144684958 - B1_Mus2 SINE Alu 0 147 2 7 668 798 203 21 165 chr4 10945162 10945246 -144684874 + B3 SINE B2 135 208 -8 7 668 201 288 0 0 chr4 10945328 10945387 -144684733 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 668 542 192 23 17 chr4 10945405 10945580 -144684540 + (TATG)n Simple_repeat Simple_repeat 4 179 0 7 668 261 252 0 0 chr4 10945593 10945696 -144684424 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 668 188 274 168 9 chr4 10947040 10947147 -144682973 + MIRm SINE MIR 66 189 -87 7 668 285 247 0 94 chr4 10947223 10947308 -144682812 + RSINE1 SINE B4 89 165 0 7 668 222 208 0 0 chr4 10947322 10947370 -144682750 + CT-rich Low_complexity Low_complexity 4 51 0 7 668 312 316 10 10 chr4 10947438 10947537 -144682583 - MamRep38 DNA hAT -162 133 35 7 668 479 328 107 31 chr4 10947844 10948162 -144681958 - MLT1D LTR MaLR -149 356 15 7 668 406 345 66 27 chr4 10948357 10948616 -144681504 - MLT1D LTR MaLR -231 274 6 7 668 921 264 51 12 chr4 10949104 10949357 -144680763 + Lx8 LINE L1 7118 7380 -93 7 668 559 250 70 0 chr4 10949363 10949491 -144680629 + B1_Mur1 SINE Alu 12 148 -1 7 668 1126 86 45 79 chr4 10949647 10949849 -144680271 - B2_Mm2 SINE B2 0 195 1 7 668 298 258 63 63 chr4 10950336 10950351 -144679769 + PB1D10 SINE Alu 1 15 -102 7 668 3922 74 2 61 chr4 10950351 10950542 -144679578 - RLTR1B LTR ERV1 0 512 321 7 668 468 0 0 0 chr4 10950542 10950594 -144679526 + (CTGGGG)n Simple_repeat Simple_repeat 1 52 0 7 668 3922 74 2 61 chr4 10950594 10950946 -144679174 - RLTR1B LTR ERV1 -192 320 1 7 668 495 226 85 0 chr4 10950946 10951052 -144679068 + B1F SINE Alu 12 126 -23 7 668 570 29 0 0 chr4 10951055 10951123 -144678997 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 7 668 205 265 0 20 chr4 10951129 10951179 -144678941 + GA-rich Low_complexity Low_complexity 3 51 0 7 668 363 258 152 8 chr4 10951180 10951305 -144678815 + B1F SINE Alu 1 143 -6 7 668 295 298 127 60 chr4 10951311 10951326 -144678794 + B4A SINE B4 86 100 -192 7 668 1766 151 146 79 chr4 10951326 10951744 -144678376 - RLTR41 LTR ERV1 0 446 1 7 668 622 175 0 104 chr4 10951744 10951862 -144678258 + PB1D9 SINE Alu 16 120 0 7 668 295 298 127 60 chr4 10951862 10951878 -144678242 + B4A SINE B4 101 245 -47 7 668 399 41 0 0 chr4 10951878 10951927 -144678193 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 7 668 698 167 114 0 chr4 10951932 10952064 -144678056 + B1_Mus1 SINE Alu 2 148 0 7 668 1649 217 113 128 chr4 10952399 10953016 -144677104 - RMER19C LTR ERVK -3 608 1 7 668 813 231 145 16 chr4 10953457 10953699 -144676421 + LTR41 LTR ERVL 3 275 -493 7 668 346 272 129 98 chr4 10953816 10953979 -144676141 + LTR41 LTR ERVL 479 646 -122 7 668 705 230 54 58 chr4 10954078 10954355 -144675765 - Ricksha DNA MuDR -69 3177 2902 7 668 277 279 0 0 chr4 10954369 10954430 -144675690 + ID_B1 SINE B4 136 196 -28 7 668 1045 190 24 0 chr4 10954466 10954671 -144675449 + B3 SINE B2 1 210 -6 7 668 665 201 7 34 chr4 10954693 10954842 -144675278 + B1F2 SINE Alu 5 149 0 7 668 332 194 26 77 chr4 10954957 10955035 -144675085 + ID4_ SINE ID 9 82 -1 7 668 894 91 21 0 chr4 10955036 10955179 -144674941 + (CA)n Simple_repeat Simple_repeat 1 146 0 7 668 390 228 99 0 chr4 10955198 10955299 -144674821 - Ricksha DNA MuDR -464 2782 2672 7 668 639 223 21 7 chr4 10955313 10955453 -144674667 - B1_Mm SINE Alu -1 146 5 7 668 5035 110 14 78 chr4 10955505 10956363 -144673757 - RLTR13B4 LTR ERVK 0 803 1 7 668 602 178 103 0 chr4 10956399 10956506 -144673614 + B1_Mur2 SINE Alu 19 136 -13 7 668 381 252 28 21 chr4 10956592 10956734 -144673386 - Ricksha DNA MuDR -702 2544 2402 7 668 1087 89 0 40 chr4 10956737 10956889 -144673231 + B1_Mus1 SINE Alu 2 147 -1 7 668 246 128 0 0 chr4 10956890 10956929 -144673191 + (A)n Simple_repeat Simple_repeat 1 39 0 7 668 826 88 9 0 chr4 10956945 10957058 -144673062 + B1_Mus1 SINE Alu 22 135 -13 7 668 324 271 67 8 chr4 10957300 10957419 -144672701 - Ricksha DNA MuDR -837 2409 2284 7 668 1173 62 0 0 chr4 10957513 10957659 -144672461 - B1_Mm SINE Alu 0 147 2 7 668 744 203 101 11 chr4 10957670 10957859 -144672261 - B3 SINE B2 -10 206 1 7 668 191 152 0 21 chr4 10958201 10958248 -144671872 + C-rich Low_complexity Low_complexity 3 48 0 7 668 264 299 103 0 chr4 10958599 10958696 -144671424 + PB1D10 SINE Alu 1 107 -10 7 668 500 220 93 0 chr4 10958744 10958862 -144671258 - RSINE1 SINE B4 -34 131 3 7 668 564 89 0 0 chr4 10958880 10958959 -144671161 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 7 668 292 207 0 65 chr4 10959342 10959404 -144670716 + B1_Mur1 SINE Alu 59 116 -33 7 668 402 146 0 0 chr4 10959410 10959506 -144670614 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 7 668 332 357 12 54 chr4 10959508 10959674 -144670446 + L3 LINE CR1 4320 4478 -11 7 668 681 144 0 0 chr4 10961202 10961334 -144668786 + (TG)n Simple_repeat Simple_repeat 2 133 0 7 668 379 222 120 0 chr4 10961562 10961670 -144668450 - B1_Mur1 SINE Alu -16 133 13 7 668 474 65 0 0 chr4 10961931 10961993 -144668127 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 7 668 251 319 132 0 chr4 10961993 10962084 -144668036 - PB1D10 SINE Alu -14 103 1 7 668 541 292 0 0 chr4 10962578 10962715 -144667405 + ID_B1 SINE B4 87 223 -1 7 668 359 329 40 13 chr4 10962736 10962887 -144667233 + HAL1-3A_ME LINE L1 2284 2438 -420 7 668 3736 62 62 4 chr4 10963339 10963823 -144666297 + RLTR1B LTR ERV1 1 512 0 7 668 461 193 44 22 chr4 10964026 10964116 -144666004 - ID_B1 SINE B4 0 224 133 7 668 276 232 106 48 chr4 10964027 10964131 -144665989 - PB1 SINE Alu 0 127 18 7 668 230 0 33 0 chr4 10964241 10964271 -144665849 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 668 423 276 10 0 chr4 10964277 10964375 -144665745 + ID_B1 SINE B4 124 222 -2 7 668 334 222 57 0 chr4 10964792 10964864 -144665256 - PB1D7 SINE Alu -19 108 27 7 668 1230 82 0 0 chr4 10965332 10965490 -144664630 + B2_Mm2 SINE B2 1 158 -37 7 668 486 0 0 0 chr4 10965491 10965545 -144664575 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 7 668 260 281 0 0 chr4 10965621 10965678 -144664442 - RSINE1 SINE B4 -19 146 90 7 668 206 290 86 64 chr4 10966005 10966145 -144663975 + L2 LINE L2 2022 2164 -1255 7 668 185 300 24 59 chr4 10966284 10966369 -144663751 - L2b LINE L2 -75 3300 3219 7 668 680 272 29 11 chr4 10966624 10966810 -144663310 - B3A SINE B2 -13 182 2 7 668 627 192 23 0 chr4 10967059 10967197 -144662923 - Lx9 LINE L1 0 7644 7503 7 668 2400 102 9 0 chr4 10967197 10967520 -144662600 + ORR1A3 LTR MaLR 1 326 0 7 668 627 192 23 0 chr4 10967520 10967553 -144662567 - Lx9 LINE L1 -142 7502 7470 7 668 2298 196 40 9 chr4 10967576 10968023 -144662097 - Lx9 LINE L1 -131 7513 7053 7 668 1230 55 0 0 chr4 10968094 10968240 -144661880 - B1_Mus2 SINE Alu -1 146 1 7 668 303 269 106 56 chr4 10968254 10968396 -144661724 + MLT1A1 LTR MaLR 258 406 -2 7 668 1346 85 16 0 chr4 10968527 10968716 -144661404 + B2_Mm1a SINE B2 1 192 -1 7 668 1252 54 108 0 chr4 10968716 10968882 -144661238 + B2_Mm2 SINE B2 10 193 -2 7 668 243 88 0 0 chr4 10969058 10969092 -144661028 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 668 673 185 8 25 chr4 10969827 10969949 -144660171 + ID_B1 SINE B4 104 223 -1 7 668 706 203 58 0 chr4 10970004 10970142 -144659978 + B1_Mur1 SINE Alu 1 146 -3 7 668 2914 172 88 60 chr4 10970194 10971093 -144659027 + RLTR13D1 LTR ERVK 1 855 0 7 668 915 218 150 118 chr4 10971708 10971913 -144658207 + MT2B LTR ERVL 2 331 -270 7 668 4228 63 40 11 chr4 10971913 10972457 -144657663 - LTRIS2 LTR ERV1 0 564 5 7 668 915 216 145 91 chr4 10972457 10972659 -144657461 + MT2B LTR ERVL 332 551 -50 7 668 441 0 0 0 chr4 10972659 10972708 -144657412 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 668 915 216 145 91 chr4 10972708 10972749 -144657371 + MT2B LTR ERVL 552 600 -1 7 668 972 117 27 33 chr4 10972775 10972925 -144657195 + B1_Mur4 SINE Alu 1 149 -1 8 668 335 275 32 42 chr4 10972999 10973094 -144657026 - RSINE1 SINE B4 -28 137 44 8 668 1527 52 0 40 chr4 10973109 10973310 -144656810 - B2_Mm1t SINE B2 0 193 1 8 668 819 167 22 0 chr4 10973350 10973488 -144656632 + B1_Mur3 SINE Alu 9 149 0 8 668 291 224 82 0 chr4 10973596 10973694 -144656426 - B3A SINE B2 -66 132 27 8 668 914 184 7 0 chr4 10973753 10973900 -144656220 - B1_Mur2 SINE Alu -1 148 1 8 668 225 296 0 0 chr4 10973951 10974005 -144656115 - B1F2 SINE Alu -95 54 1 8 668 1408 67 17 0 chr4 10974121 10974301 -144655819 + B2_Mm2 SINE B2 3 185 -10 8 668 186 43 0 0 chr4 10975089 10975112 -144655008 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 668 301 277 77 42 chr4 10975118 10975261 -144654859 - RSINE1 SINE B4 -17 148 1 8 668 626 208 69 0 chr4 10975365 10975524 -144654596 - B3 SINE B2 -11 205 36 8 668 542 151 85 42 chr4 10975961 10976079 -144654041 - ID_B1 SINE B4 -2 222 100 8 668 531 0 0 0 chr4 10976080 10976139 -144653981 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 8 668 472 189 178 9 chr4 10976917 10977024 -144653096 + B1_Mus1 SINE Alu 24 148 0 8 668 25 0 0 0 chr4 10977028 10977053 -144653067 + AT_rich Low_complexity Low_complexity 1 25 0 8 668 1143 101 83 0 chr4 10977064 10977233 -144652887 + B2_Mm1t SINE B2 2 184 -9 8 668 472 222 141 16 chr4 10977250 10977378 -144652742 + B1_Mur2 SINE Alu 5 148 -1 8 668 564 212 187 9 chr4 10977954 10978109 -144652011 + B3A SINE B2 3 183 -33 8 668 306 0 0 0 chr4 10978109 10978143 -144651977 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 668 598 252 7 28 chr4 10978451 10978594 -144651526 + B1F SINE Alu 5 144 -5 8 668 1259 41 0 0 chr4 10978845 10978992 -144651128 - B1_Mus2 SINE Alu 0 147 1 8 668 289 294 47 0 chr4 10979011 10979096 -144651024 - B1F1 SINE Alu -52 97 9 8 668 253 234 286 14 chr4 10979170 10979317 -144650803 - B2_Mm2 SINE B2 -8 187 1 8 668 803 88 69 62 chr4 10979630 10979775 -144650345 + B1_Mus2 SINE Alu 1 146 -1 8 668 268 363 19 10 chr4 10980064 10980167 -144649953 - RSINE1 SINE B4 -56 109 6 8 668 410 280 80 7 chr4 10980284 10980435 -144649685 - MIR SINE MIR -87 175 14 8 668 326 231 99 56 chr4 10984395 10984537 -144645583 + B1F1 SINE Alu 2 149 0 8 668 260 314 68 0 chr4 10984608 10984726 -144645394 - MIR SINE MIR -1 261 136 8 668 358 197 65 13 chr4 10984953 10985030 -144645090 + ID4_ SINE ID 1 81 -2 8 668 425 146 408 0 chr4 10985104 10985207 -144644913 - B1_Mur3 SINE Alu 0 149 5 8 668 516 256 5 1 chr4 10985248 10985365 -144644755 + B1_Mur3 SINE Alu 25 144 -5 8 668 710 336 130 35 chr4 10986384 10986868 -144643252 + MT2A LTR ERVL 1 530 -3 8 668 537 230 78 98 chr4 10986940 10987133 -144642987 + B3A SINE B2 2 190 -8 8 668 649 146 154 0 chr4 10987200 10987323 -144642797 - B1_Mus1 SINE Alu -6 142 1 8 668 601 206 27 68 chr4 10987352 10987498 -144642622 + ID_B1 SINE B4 82 221 -3 8 668 318 235 108 102 chr4 10987373 10987539 -144642581 - YREP_Mm Unknown Unknown -1517 295 129 8 668 1326 121 16 0 chr4 10987697 10987887 -144642233 + B2_Mm1t SINE B2 1 193 0 8 668 660 237 21 43 chr4 10988872 10989013 -144641107 + B1_Mur1 SINE Alu 12 149 0 8 668 281 299 209 29 chr4 10988980 10989020 -144641100 + B4 SINE B4 47 166 -126 8 668 568 236 0 9 chr4 10989020 10989127 -144640993 + PB1D7 SINE Alu 8 113 -7 8 668 281 299 209 29 chr4 10989127 10989152 -144640968 + B4 SINE B4 167 249 -43 8 668 609 169 293 6 chr4 10989373 10989540 -144640580 - B3 SINE B2 0 216 2 8 668 216 0 0 0 chr4 10989567 10989591 -144640529 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 668 749 275 10 35 chr4 10989648 10989813 -144640307 + B3A SINE B2 2 164 -34 8 668 348 24 0 0 chr4 10989813 10989854 -144640266 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 668 749 275 10 35 chr4 10989854 10989888 -144640232 + B3A SINE B2 165 196 -2 8 668 293 266 63 0 chr4 10989908 10989987 -144640133 + B3A SINE B2 1 84 -114 8 668 242 67 89 0 chr4 10990109 10990154 -144639966 + B1_Mur1 SINE Alu 101 149 0 8 668 321 263 43 57 chr4 10990382 10990523 -144639597 - L1M4 LINE L1 -985 5161 5023 8 668 318 280 93 31 chr4 10990614 10990743 -144639377 - ID_B1 SINE B4 -6 218 82 8 668 257 256 132 0 chr4 10990745 10990874 -144639246 - L1M4 LINE L1 -1198 4948 4803 8 668 996 108 0 7 chr4 10990882 10991022 -144639098 - B1_Mur4 SINE Alu -11 139 1 8 668 519 291 14 7 chr4 10991078 10991220 -144638900 - RSINE1 SINE B4 -21 144 2 8 668 253 146 19 28 chr4 10991224 10991285 -144638835 - L1M4 LINE L1 -1328 4818 4755 8 668 370 281 121 30 chr4 10991378 10991510 -144638610 + ID_B1 SINE B4 81 224 0 8 668 371 248 188 0 chr4 10991571 10991688 -144638432 + B1F1 SINE Alu 2 140 -9 8 668 751 253 28 39 chr4 10991696 10991877 -144638243 + B3 SINE B2 2 180 -36 8 668 768 261 76 5 chr4 10991993 10992214 -144637906 + ID_B1 SINE B4 8 248 -44 8 668 922 164 0 0 chr4 10993069 10993209 -144636911 + B1_Mus1 SINE Alu 2 141 -7 8 668 207 0 0 0 chr4 10993220 10993243 -144636877 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 668 1158 91 34 105 chr4 10993256 10993465 -144636655 + B2_Mm2 SINE B2 1 194 -1 8 668 294 102 0 0 chr4 10994128 10994150 -144635970 + (T)n Simple_repeat Simple_repeat 1 22 0 8 668 1242 54 0 0 chr4 10994150 10994297 -144635823 - B1_Mm SINE Alu 0 147 1 8 668 294 102 0 0 chr4 10994297 10994323 -144635797 + (T)n Simple_repeat Simple_repeat 1 26 0 8 668 506 231 37 9 chr4 10994392 10994501 -144635619 + B1F SINE Alu 18 129 -20 8 668 192 77 0 0 chr4 10994524 10994550 -144635570 + (T)n Simple_repeat Simple_repeat 1 26 0 8 668 1319 14 0 0 chr4 10994550 10994697 -144635423 - B1_Mm SINE Alu 0 147 1 8 668 235 246 35 0 chr4 10994833 10994890 -144635230 - B4A SINE B4 -148 144 86 8 668 242 208 0 36 chr4 10994975 10995030 -144635090 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 8 668 1296 238 86 15 chr4 10995121 10995458 -144634662 - MTD LTR MaLR -2 417 57 8 668 856 188 0 0 chr4 10995528 10995672 -144634448 - B1_Mus1 SINE Alu 0 148 5 8 668 1271 101 0 11 chr4 10995672 10995852 -144634268 - B2_Mm2 SINE B2 -16 179 2 8 668 446 267 173 144 chr4 10996312 10996583 -144633537 + B4A SINE B4 1 279 -13 8 668 517 264 0 0 chr4 10996622 10996731 -144633389 + MTEb LTR MaLR 74 182 -197 8 668 679 279 0 0 chr4 10996731 10996871 -144633249 + RSINE1 SINE B4 3 142 -23 8 668 288 0 0 0 chr4 10996890 10996922 -144633198 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 668 811 247 18 0 chr4 10996928 10997098 -144633022 + MTEb LTR MaLR 166 338 -41 8 668 291 28 0 0 chr4 10997294 10997330 -144632790 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 668 235 167 0 0 chr4 10997494 10997530 -144632590 + ID4_ SINE ID 3 38 -45 8 668 226 231 19 37 chr4 10997530 10997548 -144632572 + ID SINE ID 3 55 -169 8 668 688 217 47 0 chr4 10997746 10997875 -144632245 + B1F SINE Alu 2 136 -13 8 668 877 188 95 15 chr4 10997986 10998186 -144631934 + B3 SINE B2 1 216 0 8 668 299 268 102 23 chr4 10998203 10998291 -144631829 + ID_B1 SINE B4 91 185 -39 8 668 800 225 38 0 chr4 10998620 10998780 -144631340 + B3 SINE B2 3 168 -48 8 668 763 188 0 0 chr4 10998845 10998973 -144631147 + B1_Mur2 SINE Alu 14 141 -8 8 668 203 0 37 0 chr4 10998974 10999001 -144631119 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 8 668 1574 179 216 46 chr4 10999008 10999324 -144630796 + RLTR16 LTR ERVK 6 402 -103 8 668 198 0 0 0 chr4 10999324 10999346 -144630774 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 668 1574 179 216 46 chr4 10999346 10999445 -144630675 + RLTR16 LTR ERVK 403 492 -13 8 668 375 280 56 0 chr4 11000679 11000786 -144629334 + PB1D10 SINE Alu 3 115 -2 1 668 260 216 133 97 chr4 11000876 11000965 -144629155 + PB1D10 SINE Alu 1 97 -20 2 668 306 0 0 0 chr4 11000965 11000999 -144629121 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 668 260 216 133 97 chr4 11000999 11001022 -144629098 + PB1D10 SINE Alu 98 117 0 2 668 1197 68 0 0 chr4 11001107 11001254 -144628866 + B1_Mm SINE Alu 1 147 0 4 668 192 40 0 0 chr4 11001274 11001299 -144628821 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 668 359 296 150 55 chr4 11001306 11001506 -144628614 + L1MC4 LINE L1 6787 7005 -1037 6 668 319 264 14 0 chr4 11001622 11001694 -144628426 + ID4 SINE ID 11 83 0 7 668 309 273 53 126 chr4 11001694 11001773 -144628347 + ID_B1 SINE B4 11 150 -74 8 668 271 259 239 30 chr4 11001879 11002046 -144628074 + B3 SINE B2 14 215 -1 9 668 420 162 210 10 chr4 11002065 11002165 -144627955 + B1F2 SINE Alu 30 149 0 1 668 551 189 344 6 chr4 11002412 11002572 -144627548 - B3 SINE B2 -1 215 2 1 668 300 211 153 31 chr4 11003773 11003871 -144626249 - RMER4A LTR ERVK -46 420 311 1 668 1162 41 14 0 chr4 11003905 11004050 -144626070 - B1_Mus2 SINE Alu 0 147 1 1 668 370 258 45 0 chr4 11004196 11004285 -144625835 + B1F SINE Alu 17 109 -40 1 668 537 201 58 30 chr4 11004744 11004888 -144625232 + Lx7 LINE L1 7563 7692 -4 1 668 429 177 0 48 chr4 11004890 11004973 -144625147 + B3A SINE B2 40 118 -80 1 668 2395 137 45 93 chr4 11004982 11005231 -144624889 + RMER4A LTR ERVK 6 264 -202 1 668 2665 163 45 8 chr4 11005231 11005739 -144624381 - RLTR11A2 LTR ERVK 0 527 1 1 668 2395 137 45 93 chr4 11005739 11005922 -144624198 + RMER4A LTR ERVK 265 408 -58 1 668 894 45 0 0 chr4 11005922 11006033 -144624087 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 668 2395 137 45 93 chr4 11006033 11006083 -144624037 + RMER4A LTR ERVK 409 465 -1 1 668 1099 120 15 66 chr4 11006651 11006848 -144623272 - B2_Mm2 SINE B2 -7 188 2 2 668 201 94 0 0 chr4 11006873 11006905 -144623215 + (T)n Simple_repeat Simple_repeat 1 32 0 2 668 182 33 0 62 chr4 11006946 11006978 -144623142 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2 668 230 265 132 0 chr4 11007013 11007081 -144623039 - RSINE1 SINE B4 -72 93 17 2 668 3147 34 0 0 chr4 11007081 11007438 -144622682 + IAPEY2_LTR LTR ERVK 1 357 0 2 668 678 264 63 16 chr4 11007474 11007663 -144622457 - B3A SINE B2 0 198 1 2 668 489 258 41 24 chr4 11007737 11007860 -144622260 + ID_B1 SINE B4 90 214 -10 2 668 421 196 116 32 chr4 11008177 11008272 -144621848 - B1_Mur2 SINE Alu -11 138 36 2 668 1621 32 11 0 chr4 11008448 11008636 -144621484 + B2_Mm1a SINE B2 1 190 -3 2 668 302 250 32 97 chr4 11008902 11008995 -144621125 - PB1 SINE Alu 0 127 41 2 668 310 346 42 42 chr4 11009007 11009149 -144620971 - MIRb SINE MIR -116 152 11 3 668 322 356 97 11 chr4 11009269 11009547 -144620573 - L2 LINE L2 -470 2949 2648 3 668 374 292 41 16 chr4 11009912 11010034 -144620086 + RSINE1 SINE B4 8 132 -33 3 669 235 267 0 96 chr4 11010102 11010185 -144619935 - MER21B LTR ERV1 -112 835 761 3 669 245 280 13 13 chr4 11010440 11010516 -144619604 - ID4_ SINE ID -6 77 2 3 669 973 161 200 0 chr4 11010566 11010746 -144619374 - B3 SINE B2 0 216 1 3 669 1137 49 21 0 chr4 11010783 11010926 -144619194 - B1_Mm SINE Alu 0 147 2 3 669 485 269 58 0 chr4 11010931 11011035 -144619085 - PB1D10 SINE Alu -1 116 7 3 669 304 221 29 87 chr4 11010953 11011057 -144619063 - MT2B2 LTR ERVL -334 250 153 3 669 200 191 0 0 chr4 11011065 11011107 -144619013 + A-rich Low_complexity Low_complexity 4 45 0 3 669 307 264 64 32 chr4 11011140 11011234 -144618886 - PB1D9 SINE Alu -22 98 2 4 669 212 294 0 0 chr4 11011287 11011338 -144618782 - B1F SINE Alu -2 147 97 4 669 549 216 60 0 chr4 11011338 11011454 -144618666 - B1F SINE Alu -26 123 1 4 669 391 179 157 33 chr4 11011482 11011603 -144618517 - Lx9 LINE L1 -4 7640 7505 4 669 1687 26 0 5 chr4 11011639 11011833 -144618287 - B2_Mm2 SINE B2 -1 194 2 4 669 331 285 31 0 chr4 11012339 11012454 -144617666 - ID4_ SINE ID -24 128 6 4 669 236 293 51 131 chr4 11012503 11012535 -144617585 - YREP_Mm Unknown Unknown -1453 359 270 4 669 330 192 26 147 chr4 11012535 11012651 -144617469 + MT2B LTR ERVL 156 257 -344 4 669 886 175 0 7 chr4 11012559 11012697 -144617423 + B1_Mur1 SINE Alu 13 149 0 4 669 236 293 51 131 chr4 11012697 11012739 -144617381 - YREP_Mm Unknown Unknown -1453 269 143 4 669 391 256 62 76 chr4 11012856 11013000 -144617120 - MER21B LTR ERV1 -150 713 572 3 669 211 123 53 0 chr4 11013006 11013063 -144617057 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 4 669 463 336 83 38 chr4 11013077 11013365 -144616755 - MER21B LTR ERV1 -283 580 280 3 669 482 276 128 75 chr4 11013392 11013580 -144616540 - MER21B LTR ERV1 -649 214 17 3 669 867 188 16 36 chr4 11013625 11013818 -144616302 - B2_Mm2 SINE B2 -6 189 1 4 669 239 288 66 86 chr4 11014044 11014196 -144615924 + B3 SINE B2 68 216 0 5 669 207 260 0 74 chr4 11014288 11014342 -144615778 - L2 LINE L2 -703 2716 2667 5 669 611 127 119 1 chr4 11014680 11014800 -144615320 - B1_Mur4 SINE Alu -1 149 5 5 669 360 254 138 31 chr4 11014685 11014815 -144615305 - B4 SINE B4 -72 220 77 5 669 360 271 70 98 chr4 11014831 11014974 -144615146 - RSINE1 SINE B4 0 165 27 5 669 465 257 0 8 chr4 11014986 11015104 -144615016 - B1F SINE Alu 0 120 7 5 669 450 284 0 41 chr4 11015121 11015242 -144614878 - PB1D10 SINE Alu 0 117 2 5 669 258 105 0 0 chr4 11015246 11015284 -144614836 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 669 203 0 37 0 chr4 11015296 11015323 -144614797 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 5 669 279 0 0 0 chr4 11015323 11015354 -144614766 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 669 459 0 0 0 chr4 11015354 11015404 -144614716 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 669 530 282 33 7 chr4 11016089 11016239 -144613881 + RSINE1 SINE B4 4 157 -8 6 669 240 340 46 138 chr4 11016393 11016567 -144613553 - MamSINE1 SINE tRNA -48 242 85 6 669 426 121 0 0 chr4 11016925 11016991 -144613129 + (GGGGA)n Simple_repeat Simple_repeat 5 70 0 6 669 300 279 128 24 chr4 11016997 11017122 -144612998 + HAL1-3A_ME LINE L1 2284 2421 -437 6 669 545 254 7 34 chr4 11017805 11017952 -144612168 + ID_B1 SINE B4 74 216 -8 6 669 465 278 68 0 chr4 11018267 11018400 -144611720 - ID_B1 SINE B4 -2 222 81 6 669 431 295 37 37 chr4 11018447 11018609 -144611511 - RSINE1 SINE B4 0 165 4 6 669 902 102 36 14 chr4 11018900 11019039 -144611081 + B1_Mur4 SINE Alu 9 150 0 6 669 624 246 7 21 chr4 11019428 11019573 -144610547 - ID_B1 SINE B4 0 224 82 6 669 867 251 5 70 chr4 11019774 11019988 -144610132 + B3 SINE B2 6 205 -11 7 669 255 31 0 0 chr4 11020257 11020289 -144609831 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 669 352 307 66 50 chr4 11020694 11020900 -144609220 - B2_Mm2 SINE B2 -1 215 2 7 669 207 0 0 0 chr4 11020948 11020971 -144609149 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 669 885 219 19 19 chr4 11022164 11022374 -144607746 + B3 SINE B2 1 210 -6 7 669 219 226 0 31 chr4 11022431 11022495 -144607625 + PB1D10 SINE Alu 56 117 0 7 669 305 256 17 11 chr4 11022493 11022610 -144607510 + B1_Mus2 SINE Alu 1 149 0 7 669 287 149 14 0 chr4 11022618 11022692 -144607428 + GA-rich Low_complexity Low_complexity 2 76 0 7 669 649 173 53 4 chr4 11023366 11023499 -144606621 + B1F SINE Alu 13 144 -5 7 669 470 224 112 0 chr4 11023526 11023633 -144606487 + ID_B1 SINE B4 105 223 -1 7 669 1398 211 92 0 chr4 11023749 11024053 -144606067 + MTD LTR MaLR 11 342 -77 8 669 224 319 0 62 chr4 11024049 11024146 -144605974 + B4A SINE B4 85 175 -117 8 669 973 249 25 10 chr4 11024163 11024366 -144605754 + B3 SINE B2 11 216 0 8 669 507 248 9 0 chr4 11024369 11024478 -144605642 + PB1D9 SINE Alu 1 110 -10 8 669 317 24 24 0 chr4 11024478 11024520 -144605600 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 8 669 313 176 13 13 chr4 11025752 11025827 -144604293 + CT-rich Low_complexity Low_complexity 2 76 0 8 669 262 260 27 14 chr4 11025950 11026024 -144604096 + ID4_ SINE ID 8 82 -1 8 669 1080 59 0 0 chr4 11026715 11026851 -144603269 - B1_Mus1 SINE Alu 0 148 13 8 669 281 308 66 19 chr4 11026856 11026962 -144603158 + PB1D7 SINE Alu 1 111 -9 8 669 255 297 89 0 chr4 11027007 11027108 -144603012 + PB1D7 SINE Alu 1 110 -10 8 669 405 125 0 0 chr4 11027124 11027180 -144602940 - ORR1B2 LTR MaLR 0 367 312 9 669 2655 237 107 92 chr4 11027189 11028493 -144601627 - RMER1A Other Other -15 1015 15 9 669 1271 141 170 0 chr4 11028579 11028820 -144601300 - ORR1B2 LTR MaLR -85 282 1 9 669 526 318 13 13 chr4 11029017 11029167 -144600953 - RSINE1 SINE B4 -15 150 1 9 669 942 282 10 88 chr4 11029296 11029603 -144600517 - B4A SINE B4 -5 287 5 9 669 407 220 21 42 chr4 11029711 11029806 -144600314 + B1F SINE Alu 23 115 -34 9 669 488 219 160 16 chr4 11029848 11029973 -144600147 - B1_Mur2 SINE Alu -6 143 1 9 669 239 250 152 48 chr4 11030142 11030247 -144599873 - LTR33A_ LTR ERVL -384 147 32 9 669 472 218 100 0 chr4 11030462 11030572 -144599548 + ID_B1 SINE B4 82 198 -26 9 669 261 265 0 14 chr4 11030599 11030668 -144599452 + GA-rich Low_complexity Low_complexity 1 68 0 9 669 1185 173 152 63 chr4 11030753 11031068 -144599052 - Lx5 LINE L1 0 7050 6708 9 669 481 287 153 39 chr4 11032077 11032280 -144597840 + B4 SINE B4 53 278 -14 1 669 333 0 0 0 chr4 11032292 11032329 -144597791 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 669 461 17 17 0 chr4 11032329 11032386 -144597734 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 669 1124 196 106 166 chr4 11033101 11033288 -144596832 + MTE2a LTR MaLR 7 213 -166 1 669 852 116 0 98 chr4 11033288 11033451 -144596669 - B1_Mur4 SINE Alu -3 147 1 1 669 1124 196 106 166 chr4 11033451 11033660 -144596460 + MTE2a LTR MaLR 214 379 0 1 669 662 184 126 78 chr4 11033701 11033907 -144596213 - B3 SINE B2 0 216 1 1 669 2159 150 49 5 chr4 11033941 11034309 -144595811 - MTC LTR MaLR -15 406 23 1 669 504 45 0 0 chr4 11034315 11034382 -144595738 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 669 309 217 0 0 chr4 11034386 11034446 -144595674 - ID4_ SINE ID -22 61 2 1 669 226 204 0 93 chr4 11034404 11034458 -144595662 - ZP3AR Satellite Satellite -127 85 37 1 669 225 0 0 0 chr4 11034654 11034679 -144595441 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 669 511 243 66 7 chr4 11034715 11034852 -144595268 - B1_Mur2 SINE Alu 0 149 5 1 669 927 239 67 0 chr4 11034906 11035115 -144595005 + ID_B1 SINE B4 2 224 0 1 669 2861 128 103 2 chr4 11035322 11035798 -144594322 + RLTR28 LTR ERVL 1 524 0 1 669 703 282 43 24 chr4 11035848 11036059 -144594061 + ID_B1 SINE B4 4 218 -6 1 669 329 250 148 0 chr4 11036675 11036763 -144593357 - B1F SINE Alu -1 148 48 1 669 665 203 24 24 chr4 11036758 11036884 -144593236 + B1_Mur2 SINE Alu 21 146 -3 1 669 207 139 0 0 chr4 11036889 11036925 -144593195 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1 669 289 232 0 0 chr4 11036953 11037009 -144593111 - B1F SINE Alu -85 64 9 1 669 279 353 48 19 chr4 11036954 11037058 -144593062 - B4A SINE B4 -144 148 42 1 669 508 280 8 23 chr4 11037070 11037198 -144592922 - RSINE1 SINE B4 -36 129 4 1 669 390 307 78 6 chr4 11037228 11037408 -144592712 + MER112 DNA MER1_type 1 193 -68 1 669 257 127 18 18 chr4 11037735 11037791 -144592329 + MTE-int LTR MaLR 1523 1578 -2 1 669 231 36 0 0 chr4 11038011 11038039 -144592081 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 669 387 269 38 19 chr4 11038086 11038110 -144592010 + ID_B1 SINE B4 117 140 -84 1 669 501 97 0 0 chr4 11038110 11038182 -144591938 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 669 387 269 38 19 chr4 11038182 11038263 -144591857 + ID_B1 SINE B4 141 223 -1 1 669 406 283 25 42 chr4 11038592 11038710 -144591410 + PB1D7 SINE Alu 5 120 0 1 669 515 265 113 16 chr4 11038808 11038976 -144591144 + B3A SINE B2 1 174 -19 1 669 937 227 24 15 chr4 11038976 11039182 -144590938 + B3 SINE B2 3 210 -6 1 669 298 284 89 74 chr4 11039182 11039203 -144590917 + B2_Mm1a SINE B2 175 193 0 1 669 274 303 15 0 chr4 11039400 11039466 -144590654 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 1 669 383 225 37 12 chr4 11040447 11040528 -144589592 + RSINE1 SINE B4 3 85 -80 1 669 429 36 0 0 chr4 11040556 11040611 -144589509 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 669 714 268 91 0 chr4 11040734 11040932 -144589188 + ID_B1 SINE B4 2 217 -7 1 669 1607 196 107 18 chr4 11041100 11041485 -144588635 + MTD LTR MaLR 1 419 0 1 669 1364 61 18 21 chr4 11041601 11041817 -144588303 + B2_Mm1a SINE B2 1 213 -3 1 669 485 175 190 163 chr4 11041864 11042026 -144588094 + Lx9 LINE L1 7337 7467 -177 1 669 1196 55 0 7 chr4 11042026 11042173 -144587947 - B1_Mus2 SINE Alu 0 147 2 1 669 485 175 190 163 chr4 11042173 11042310 -144587810 + Lx9 LINE L1 7468 7644 0 1 669 809 192 127 17 chr4 11042480 11042755 -144587365 - MTD LTR MaLR 0 419 66 1 669 697 169 62 0 chr4 11043050 11043180 -144586940 + B1_Mur2 SINE Alu 6 143 -6 1 669 234 272 62 80 chr4 11043083 11043195 -144586925 + RLTR25B LTR ERVK 441 550 -478 1 669 950 273 34 17 chr4 11043195 11043553 -144586567 + L1_Rod LINE L1 1639 2002 -3845 1 669 209 196 0 0 chr4 11043720 11043766 -144586354 + T-rich Low_complexity Low_complexity 1 46 0 1 669 780 172 26 40 chr4 11043766 11043917 -144586203 - B1_Mur4 SINE Alu 0 150 2 1 669 889 310 74 14 chr4 11043920 11044339 -144585781 + L1_Rod LINE L1 2127 2570 -3277 1 669 1671 194 45 67 chr4 11044339 11044585 -144585535 + ORR1D1 LTR MaLR 1 228 -146 1 669 396 0 0 0 chr4 11044585 11044629 -144585491 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 1 669 1671 194 45 67 chr4 11044629 11044758 -144585362 + ORR1D1 LTR MaLR 229 367 -7 1 669 1188 41 0 40 chr4 11044758 11044893 -144585227 + B1_Mm SINE Alu 2 136 -11 1 669 222 37 0 0 chr4 11044893 11044920 -144585200 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 669 1188 41 0 40 chr4 11044920 11044936 -144585184 + B1_Mm SINE Alu 137 147 0 1 669 967 280 34 42 chr4 11044943 11045340 -144584780 + L1M2 LINE L1 2538 2962 -3181 1 669 228 35 0 0 chr4 11045340 11045369 -144584751 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 669 967 286 51 94 chr4 11045369 11045530 -144584590 + L1M2 LINE L1 2928 3066 -2814 1 669 695 243 33 39 chr4 11045569 11045749 -144584371 + B3 SINE B2 3 181 -35 1 669 761 231 26 7 chr4 11045778 11045939 -144584181 + ID_B1 SINE B4 81 245 -47 1 669 260 70 23 0 chr4 11045943 11045986 -144584134 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 669 796 273 74 19 chr4 11046021 11046290 -144583830 + B4 SINE B4 9 292 0 1 669 248 182 23 0 chr4 11046287 11046331 -144583789 + MLT1B LTR MaLR 116 160 -230 1 669 1390 75 32 0 chr4 11046347 11046533 -144583587 - B2_Mm1a SINE B2 0 193 2 1 669 2069 144 72 0 chr4 11046533 11046894 -144583226 + MTC LTR MaLR 1 387 -34 1 669 531 273 61 139 chr4 11046909 11047059 -144583061 + MLT1B LTR MaLR 170 329 -61 1 669 619 260 27 43 chr4 11047059 11047244 -144582876 + B3A SINE B2 1 182 -16 1 669 531 273 61 139 chr4 11047244 11047323 -144582797 + MLT1B LTR MaLR 330 381 -9 1 669 375 281 85 65 chr4 11047816 11048063 -144582057 + RMER5 LTR ERV1 77 328 -206 1 669 537 239 18 9 chr4 11048081 11048195 -144581925 + RMER5 LTR ERV1 382 496 -38 1 669 315 45 0 0 chr4 11048194 11048238 -144581882 + B1_Mm SINE Alu 104 147 0 1 669 254 98 0 19 chr4 11048243 11048295 -144581825 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 669 811 215 53 14 chr4 11048341 11048549 -144581571 + B3 SINE B2 1 216 0 1 669 1541 190 120 17 chr4 11048609 11048968 -144581152 + RMER10A LTR ERVL 1 396 -46 1 669 1698 31 0 0 chr4 11048983 11049175 -144580945 + B2_Mm1a SINE B2 2 193 0 1 669 367 307 38 30 chr4 11049192 11049323 -144580797 - B1_Mur2 SINE Alu -17 132 1 1 669 388 309 52 42 chr4 11049554 11049767 -144580353 + L1MC4a LINE L1 5685 5899 -1983 1 669 530 189 175 32 chr4 11049884 11050002 -144580118 + B1F SINE Alu 4 140 -9 1 669 198 0 0 0 chr4 11050002 11050024 -144580096 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 669 256 243 173 77 chr4 11050057 11050213 -144579907 + B4A SINE B4 36 206 -86 1 669 315 0 0 0 chr4 11050338 11050373 -144579747 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 669 611 210 0 16 chr4 11051374 11051495 -144578625 - PB1D7 SINE Alu 0 120 2 1 669 552 203 0 204 chr4 11051576 11051671 -144578449 + B4A SINE B4 145 221 -71 1 669 568 184 159 186 chr4 11051671 11051859 -144578261 + B3 SINE B2 1 181 -35 1 669 243 0 0 0 chr4 11051859 11051886 -144578234 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1 669 568 184 159 186 chr4 11051886 11051917 -144578203 + B3 SINE B2 182 213 -3 1 669 552 203 0 204 chr4 11051917 11052007 -144578113 + B4A SINE B4 222 292 0 1 669 225 0 0 0 chr4 11052007 11052032 -144578088 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 669 300 53 0 0 chr4 11052032 11052069 -144578051 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 669 365 280 103 0 chr4 11052136 11052243 -144577877 - RSINE1 SINE B4 -4 161 44 1 669 468 238 38 0 chr4 11052534 11052639 -144577481 - PB1D10 SINE Alu -2 115 7 1 669 690 238 110 43 chr4 11052655 11052910 -144577210 - Ricksha_c DNA MuDR -140 1908 1637 1 669 350 175 0 16 chr4 11053028 11053092 -144577028 - Ricksha_c DNA MuDR -1311 737 675 1 669 302 288 89 9 chr4 11053106 11053218 -144576902 - Ricksha_c DNA MuDR -1481 567 447 1 669 260 309 0 60 chr4 11053229 11053338 -144576782 - Ricksha_c DNA MuDR -1820 228 127 1 669 340 284 83 0 chr4 11053338 11053447 -144576673 - PB1D7 SINE Alu 0 120 3 1 669 260 309 0 60 chr4 11053447 11053471 -144576649 - Ricksha_c DNA MuDR -1922 126 103 1 669 640 247 13 26 chr4 11053955 11054109 -144576011 + RSINE1 SINE B4 1 152 -13 1 669 330 287 0 39 chr4 11054169 11054296 -144575824 - L1MB8 LINE L1 -10 6168 6047 1 669 317 307 32 7 chr4 11054307 11054461 -144575659 - L1MB8 LINE L1 -211 5973 5816 1 669 501 179 0 24 chr4 11054588 11054714 -144575406 + CT-rich Low_complexity Low_complexity 1 123 0 1 669 623 133 18 45 chr4 11054714 11054824 -144575296 - B1_Mus2 SINE Alu -1 148 42 1 669 234 152 0 0 chr4 11054826 11054885 -144575235 + CT-rich Low_complexity Low_complexity 4 62 0 1 669 797 282 67 39 chr4 11055051 11055335 -144574785 - B4A SINE B4 0 292 1 1 669 218 178 21 43 chr4 11055784 11055831 -144574289 - ID4 SINE ID -3 80 35 1 669 1234 41 0 13 chr4 11056090 11056239 -144573881 - B1_Mus2 SINE Alu 0 147 1 1 669 27 29 0 0 chr4 11056744 11056778 -144573342 + AT_rich Low_complexity Low_complexity 1 34 0 1 669 515 256 16 8 chr4 11056785 11056907 -144573213 - RSINE1 SINE B4 -15 150 28 1 669 291 54 0 0 chr4 11056908 11056945 -144573175 + (T)n Simple_repeat Simple_repeat 1 37 0 1 669 1202 62 0 0 chr4 11056949 11057093 -144573027 - B1_Mus2 SINE Alu -1 146 3 1 669 1444 199 162 3 chr4 11057149 11057506 -144572614 + MTD LTR MaLR 1 414 -5 1 669 677 238 0 0 chr4 11057693 11057828 -144572292 - ID_B1 SINE B4 -6 218 88 1 669 623 249 16 60 chr4 11057889 11058073 -144572047 - B3 SINE B2 -1 215 40 1 669 558 271 67 6 chr4 11059358 11059536 -144570584 + L1MCa LINE L1 636 824 -5684 1 669 322 279 62 18 chr4 11059549 11059662 -144570458 + PB1D7 SINE Alu 1 118 -2 1 669 22 0 0 0 chr4 11059669 11059691 -144570429 + AT_rich Low_complexity Low_complexity 1 22 0 1 669 748 262 72 14 chr4 11059751 11059960 -144570160 - ID_B1 SINE B4 0 224 4 1 669 264 238 0 16 chr4 11059969 11060033 -144570087 - PB1D7 SINE Alu -6 114 52 1 669 1774 122 103 0 chr4 11060035 11060355 -144569765 + ORR1B1 LTR MaLR 11 363 -31 1 669 312 164 0 0 chr4 11061355 11061410 -144568710 + ORR1B1 LTR MaLR 324 378 0 1 669 1083 90 0 14 chr4 11061833 11061979 -144568141 + B1_Mus2 SINE Alu 3 146 -1 1 669 952 230 168 0 chr4 11062046 11062212 -144567908 + MTE2a LTR MaLR 2 185 -194 2 669 618 14 0 0 chr4 11062212 11062283 -144567837 + (CAG)n Simple_repeat Simple_repeat 1 71 0 2 669 952 230 168 0 chr4 11062283 11062407 -144567713 + MTE2a LTR MaLR 186 340 -39 2 669 447 35 0 0 chr4 11062413 11062470 -144567650 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 669 495 208 191 37 chr4 11063354 11063644 -144566476 + MTE2a LTR MaLR 3 370 -9 2 669 809 126 0 8 chr4 11063840 11063968 -144566152 + B1_Mus2 SINE Alu 9 135 -12 2 669 345 24 0 0 chr4 11063968 11064010 -144566110 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 669 327 233 14 0 chr4 11064028 11064101 -144566019 - PB1D10 SINE Alu -21 96 23 2 669 299 230 57 11 chr4 11064034 11064122 -144565998 - ID_B1 SINE B4 -53 171 80 2 669 469 267 58 0 chr4 11064186 11064306 -144565814 - B1_Mur1 SINE Alu -21 128 2 2 669 325 228 140 11 chr4 11064405 11064498 -144565622 - PB1D7 SINE Alu -10 110 6 2 669 530 275 29 7 chr4 11064441 11064580 -144565540 - ID_B1 SINE B4 -82 142 1 2 669 681 139 72 65 chr4 11065003 11065141 -144564979 - B1_Mur1 SINE Alu -1 148 10 2 669 185 35 0 65 chr4 11065149 11065180 -144564940 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 669 708 94 256 0 chr4 11065180 11065297 -144564823 - B1_Mus1 SINE Alu 0 148 2 2 669 773 146 29 12 chr4 11065357 11065530 -144564590 + (TATG)n Simple_repeat Simple_repeat 3 178 0 2 669 428 272 55 23 chr4 11065644 11065772 -144564348 - RSINE1 SINE B4 -33 132 1 2 669 189 0 0 0 chr4 11065774 11065795 -144564325 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 669 240 331 141 0 chr4 11065795 11065916 -144564204 - B1F2 SINE Alu -11 138 1 2 669 299 236 23 24 chr4 11066048 11066140 -144563980 - ID4 SINE ID -60 92 1 2 669 228 103 0 49 chr4 11066299 11066340 -144563780 + RMER10A LTR ERVL 1 39 -403 2 669 278 294 33 0 chr4 11066642 11066734 -144563386 + CT-rich Low_complexity Low_complexity 2 96 0 2 669 1201 190 113 22 chr4 11066735 11066868 -144563252 + ORR1C2 LTR MaLR 25 167 -217 2 669 315 0 0 0 chr4 11066868 11066903 -144563217 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 669 1201 182 110 4 chr4 11066903 11067090 -144563030 + ORR1C2 LTR MaLR 168 378 -6 2 669 375 23 0 0 chr4 11067651 11067695 -144562425 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 669 543 252 148 0 chr4 11067709 11067844 -144562276 - B4A SINE B4 -4 288 134 2 669 2076 150 113 0 chr4 11067947 11068301 -144561819 - ORR1B1 LTR MaLR 0 394 1 2 669 2785 132 84 10 chr4 11068301 11068814 -144561306 - ORR1B1-int LTR MaLR 0 1509 959 2 669 783 153 73 137 chr4 11068817 11069036 -144561084 - ORR1B1 LTR MaLR -179 205 1 2 669 2141 113 6 10 chr4 11069090 11069402 -144560718 + RLTR10E LTR ERVK 1 311 0 2 669 246 200 67 0 chr4 11069438 11069498 -144560622 - L1M5 LINE L1 -446 5678 5615 2 669 354 293 21 16 chr4 11069506 11069697 -144560423 - L1M5 LINE L1 -651 5473 5282 2 669 234 0 0 0 chr4 11070171 11070197 -144559923 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 669 282 271 148 9 chr4 11070355 11070463 -144559657 - MTEa LTR MaLR -255 124 2 2 669 239 309 93 9 chr4 11070496 11070604 -144559516 - PB1D10 SINE Alu 0 117 1 2 669 27 0 0 0 chr4 11070606 11070633 -144559487 + AT_rich Low_complexity Low_complexity 1 27 0 2 669 522 198 103 0 chr4 11070638 11070754 -144559366 - B1_Mm SINE Alu -6 141 14 2 669 1169 55 0 14 chr4 11070754 11070901 -144559219 + B1_Mus2 SINE Alu 1 145 -2 2 669 228 257 9 37 chr4 11071153 11071262 -144558858 - Lx5 LINE L1 -1 7049 6944 2 669 203 309 0 67 chr4 11071407 11071497 -144558623 + L2a LINE L2 2956 3039 -387 2 669 252 259 0 0 chr4 11071704 11071758 -144558362 - BC1_Mm scRNA scRNA -66 86 33 2 669 219 254 0 0 chr4 11072390 11072453 -144557667 + GA-rich Low_complexity Low_complexity 2 64 0 2 669 295 78 0 38 chr4 11072757 11072810 -144557310 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 2 669 22 0 0 0 chr4 11072883 11072905 -144557215 + AT_rich Low_complexity Low_complexity 1 22 0 2 669 225 284 0 95 chr4 11072914 11072988 -144557132 + MER5A DNA MER1_type 101 167 -22 2 669 709 280 23 41 chr4 11073029 11073249 -144556871 - ID_B1 SINE B4 -8 216 1 2 669 1638 42 0 0 chr4 11073317 11073509 -144556611 - B2_Mm1t SINE B2 0 193 2 2 669 185 350 24 32 chr4 11073555 11073679 -144556441 + MIRc SINE MIR 124 246 -22 2 669 443 224 83 53 chr4 11074042 11074174 -144555946 - B1F1 SINE Alu -13 136 1 2 669 247 247 110 30 chr4 11075698 11075798 -144554322 - PB1D7 SINE Alu -12 108 1 2 669 726 166 192 6 chr4 11075823 11076005 -144554115 + B3 SINE B2 1 216 0 2 669 266 253 24 60 chr4 11076028 11076112 -144554008 + MLT1B LTR MaLR 5 85 -305 2 669 834 185 138 0 chr4 11076260 11076449 -144553671 - B3 SINE B2 0 216 2 2 669 201 277 78 10 chr4 11076462 11076564 -144553556 + L2 LINE L2 1921 2029 -1390 2 669 263 338 12 0 chr4 11077151 11077231 -144552889 - ID4_ SINE ID 0 83 3 2 669 194 417 15 23 chr4 11077694 11077824 -144552296 - MIR SINE MIR -28 234 106 2 669 470 13 11 172 chr4 11078197 11078290 -144551830 + B1_Mm SINE Alu 70 147 0 2 669 334 293 0 0 chr4 11078458 11078540 -144551580 - ID4 SINE ID 0 83 2 2 669 272 264 90 45 chr4 11078642 11078753 -144551367 + B1F2 SINE Alu 29 144 -5 2 669 792 230 107 0 chr4 11078755 11078933 -144551187 + B3 SINE B2 3 199 -17 2 669 1139 166 240 62 chr4 11078972 11079293 -144550827 - ORR1C1 LTR MaLR 0 378 1 2 669 207 189 0 0 chr4 11080511 11080564 -144549556 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 669 456 250 108 0 chr4 11080581 11080701 -144549419 - ID_B1 SINE B4 -6 218 86 2 669 392 311 0 0 chr4 11080818 11080921 -144549199 + PB1D10 SINE Alu 2 104 -13 2 669 858 47 0 0 chr4 11080951 11081058 -144549062 + (GGGAGA)n Simple_repeat Simple_repeat 3 109 0 2 669 283 335 148 46 chr4 11081082 11081448 -144548672 - MLT1G1 LTR MaLR -60 519 117 2 669 1228 54 0 0 chr4 11081574 11081721 -144548399 - B1_Mus1 SINE Alu -1 147 1 2 669 21 89 0 0 chr4 11081776 11081832 -144548288 + AT_rich Low_complexity Low_complexity 1 56 0 2 669 798 98 75 38 chr4 11082427 11082586 -144547534 - URR1B DNA MER1_type 0 225 61 2 669 22 0 0 0 chr4 11083428 11083450 -144546670 + GC_rich Low_complexity Low_complexity 1 22 0 2 669 194 269 187 36 chr4 11083930 11084069 -144546051 - MIRb SINE MIR -24 244 85 2 669 1207 48 0 7 chr4 11084331 11084479 -144545641 - B1_Mm SINE Alu 0 147 1 2 669 359 305 0 0 chr4 11085007 11085102 -144545018 - RSINE1 SINE B4 -68 97 3 2 669 1281 102 27 0 chr4 11085123 11085310 -144544810 - B2_Mm1t SINE B2 -1 192 1 2 669 222 211 52 52 chr4 11085578 11085679 -144544441 + MIR SINE MIR 72 178 -90 2 669 312 91 0 0 chr4 11085698 11085742 -144544378 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2 669 333 0 0 0 chr4 11085742 11085778 -144544342 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 669 832 135 55 28 chr4 11085909 11086054 -144544066 + B1_Mur4 SINE Alu 2 150 0 2 669 714 245 32 6 chr4 11086780 11086936 -144543184 - B3A SINE B2 -38 160 1 2 669 358 294 65 30 chr4 11087008 11087176 -144542944 - Charlie5 DNA MER1_type -128 2496 2323 2 669 315 0 0 0 chr4 11087189 11087224 -144542896 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 669 1236 44 0 0 chr4 11087224 11087383 -144542737 - B2_Mm1a SINE B2 -33 160 2 2 669 1141 82 7 0 chr4 11087422 11087568 -144542552 + B1_Mus1 SINE Alu 2 148 0 2 669 361 285 55 31 chr4 11087772 11087899 -144542221 + B1_Mur2 SINE Alu 19 148 -1 2 669 686 177 48 28 chr4 11087981 11088126 -144541994 + B1_Mus1 SINE Alu 1 148 0 2 669 268 182 71 57 chr4 11088969 11089039 -144541081 + PB1D7 SINE Alu 45 115 -5 2 669 558 188 116 8 chr4 11089264 11089393 -144540727 - B1_Mur4 SINE Alu -1 149 7 2 669 231 209 15 216 chr4 11089314 11089448 -144540672 - MT2B LTR ERVL -362 239 133 2 669 393 268 65 13 chr4 11089393 11089410 -144540710 - B4 SINE B4 -60 183 70 2 669 1208 93 60 11 chr4 11089505 11089689 -144540431 - B2_Mm2 SINE B2 0 195 3 2 669 290 282 13 0 chr4 11089973 11090051 -144540069 + L2b LINE L2 3291 3369 -6 2 669 1586 47 0 15 chr4 11090119 11090314 -144539806 - B2_Mm1a SINE B2 0 193 2 2 669 482 261 115 40 chr4 11090504 11090652 -144539468 - RSINE1 SINE B4 -4 161 3 2 669 1196 54 0 13 chr4 11090715 11090865 -144539255 - B1_Mus1 SINE Alu 0 148 1 2 669 948 214 71 5 chr4 11090867 11091064 -144539056 - B3 SINE B2 -6 210 1 2 669 234 152 35 92 chr4 11091346 11091433 -144538687 + A-rich Low_complexity Low_complexity 1 82 0 2 669 258 273 0 29 chr4 11091751 11091819 -144538301 - ID_B1 SINE B4 -38 186 121 2 669 742 243 69 5 chr4 11093744 11093947 -144536173 + B3 SINE B2 1 216 0 2 669 468 287 0 0 chr4 11094539 11094647 -144535473 + PB1D10 SINE Alu 2 109 -8 2 669 397 214 14 0 chr4 11095238 11095308 -144534812 - ID4 SINE ID -11 72 2 2 669 656 294 28 0 chr4 11095459 11095639 -144534481 + ID_B1 SINE B4 8 192 -32 2 669 235 273 26 13 chr4 11095682 11095760 -144534360 + ID4 SINE ID 4 82 -1 2 669 662 176 94 14 chr4 11095881 11096019 -144534101 - B1_Mur4 SINE Alu -1 149 1 2 669 551 310 0 25 chr4 11096282 11096441 -144533679 + ID_B1 SINE B4 64 218 -6 2 669 341 290 28 0 chr4 11096556 11096663 -144533457 + PB1D10 SINE Alu 1 110 -7 3 669 488 184 0 0 chr4 11099625 11099701 -144530419 + ID4 SINE ID 2 77 -6 3 669 28 0 0 0 chr4 11101301 11101329 -144528791 + AT_rich Low_complexity Low_complexity 1 28 0 3 669 372 269 0 71 chr4 11101657 11101769 -144528351 + PB1D10 SINE Alu 7 110 -7 3 669 498 108 0 0 chr4 11101793 11101867 -144528253 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 669 252 143 0 0 chr4 11101867 11101909 -144528211 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 669 919 237 47 5 chr4 11102012 11102203 -144527917 - B3 SINE B2 -17 199 1 3 669 329 256 30 90 chr4 11102383 11102516 -144527604 - B4A SINE B4 -4 288 164 3 669 286 275 0 0 chr4 11102532 11102601 -144527519 - B4A SINE B4 -208 84 16 3 669 1757 245 96 26 chr4 11103035 11103616 -144526504 - RLTR1 LTR ERV1 0 624 1 3 669 31524 239 34 21 chr4 11103616 11111018 -144519102 - MMERGLN-int LTR ERV1 0 7556 3 3 669 1683 248 99 36 chr4 11111020 11111602 -144518518 - RLTR1 LTR ERV1 0 624 1 3 669 493 204 51 0 chr4 11111981 11112079 -144518041 + ID_B1 SINE B4 122 224 0 3 669 1473 33 44 0 chr4 11112349 11112531 -144517589 + B2_Mm1a SINE B2 2 191 -2 3 669 531 226 86 14 chr4 11112664 11112803 -144517317 + ID_B1 SINE B4 1 149 -75 3 669 204 67 0 0 chr4 11113112 11113142 -144516978 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 669 369 0 0 0 chr4 11113142 11113183 -144516937 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 669 413 304 48 8 chr4 11113184 11113310 -144516810 + RSINE1 SINE B4 27 157 -8 3 669 907 134 28 0 chr4 11113354 11113496 -144516624 + B1_Mus1 SINE Alu 1 146 -2 3 669 304 262 23 23 chr4 11113510 11113596 -144516524 + MER46C DNA MER2_type 3 88 -250 3 669 569 229 43 113 chr4 11113745 11113976 -144516144 + B3 SINE B2 2 216 0 3 669 701 284 90 32 chr4 11113993 11114182 -144515938 + B4A SINE B4 2 201 -91 3 669 2588 107 56 2 chr4 11114190 11114584 -144515536 + MT2C_Mm LTR ERVL 61 475 0 3 669 482 239 22 0 chr4 11114584 11114676 -144515444 + B4A SINE B4 189 282 -10 3 669 23 33 0 0 chr4 11114707 11114737 -144515383 + AT_rich Low_complexity Low_complexity 1 30 0 3 669 431 284 44 7 chr4 11114901 11115036 -144515084 + B1F SINE Alu 1 140 -9 3 669 452 155 9 97 chr4 11115184 11115298 -144514822 - B1_Mus2 SINE Alu -2 145 42 3 669 261 330 47 28 chr4 11115387 11115493 -144514627 + PB1D10 SINE Alu 10 117 0 3 669 368 278 50 30 chr4 11115690 11115790 -144514330 - PB1 SINE Alu -3 124 23 3 669 411 250 28 0 chr4 11115973 11116081 -144514039 - PB1D9 SINE Alu -6 114 4 3 669 1355 89 17 0 chr4 11116174 11116354 -144513766 + B2_Mm2 SINE B2 1 183 -12 3 669 541 231 9 36 chr4 11116408 11116520 -144513600 - B1_Mur1 SINE Alu -40 109 1 3 669 262 67 247 23 chr4 11116754 11116808 -144513312 - ID2 SINE ID -74 78 15 3 669 778 189 14 0 chr4 11116894 11117037 -144513083 - B1_Mur4 SINE Alu 0 150 6 3 669 256 217 67 0 chr4 11117264 11117324 -144512796 - B1F SINE Alu -8 141 78 3 669 222 62 0 0 chr4 11118020 11118052 -144512068 + (CGCGG)n Simple_repeat Simple_repeat 1 32 0 3 669 192 97 0 0 chr4 11118751 11118782 -144511338 + (CCCG)n Simple_repeat Simple_repeat 4 34 0 3 669 23 54 0 0 chr4 11118792 11118829 -144511291 + GC_rich Low_complexity Low_complexity 1 37 0 3 669 887 33 186 8 chr4 11120832 11120956 -144509164 + B1_Mus2 SINE Alu 2 147 0 3 669 560 197 205 0 chr4 11121835 11121957 -144508163 + B1_Mur4 SINE Alu 3 149 -1 3 669 22 0 0 0 chr4 11121981 11122003 -144508117 + AT_rich Low_complexity Low_complexity 1 22 0 3 669 212 191 60 60 chr4 11122448 11122498 -144507622 - ID4_ SINE ID 0 83 34 3 669 504 205 92 23 chr4 11122873 11123003 -144507117 + B1F SINE Alu 10 148 -1 3 669 278 176 13 105 chr4 11123231 11123307 -144506813 + ID4_ SINE ID 1 69 -14 3 669 667 215 37 0 chr4 11125147 11125282 -144504838 - B1_Mur2 SINE Alu -8 141 2 3 669 469 247 243 38 chr4 11125391 11125576 -144504544 - ID_B1 SINE B4 0 224 2 3 669 636 208 8 32 chr4 11126809 11126933 -144503187 - B1_Mus1 SINE Alu -26 122 2 3 669 1258 84 51 0 chr4 11127208 11127386 -144502734 - B2_Mm2 SINE B2 -8 187 1 3 669 1118 35 0 78 chr4 11127811 11127964 -144502156 + B1_Mus2 SINE Alu 1 141 -6 3 669 180 0 0 0 chr4 11127966 11127986 -144502134 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 669 1181 55 7 0 chr4 11128613 11128759 -144501361 - B1_Mus2 SINE Alu 0 147 1 3 669 475 265 166 6 chr4 11128966 11129129 -144500991 + B3A SINE B2 1 189 -9 3 669 242 244 244 0 chr4 11129172 11129250 -144500870 + B1F1 SINE Alu 1 97 -52 3 669 243 0 0 0 chr4 11129531 11129558 -144500562 + (T)n Simple_repeat Simple_repeat 1 27 0 3 669 427 151 161 0 chr4 11129768 11129861 -144500259 + PB1D10 SINE Alu 5 112 -5 3 669 384 205 100 25 chr4 11129930 11130010 -144500110 - B1_Mus1 SINE Alu -60 90 5 3 669 309 203 0 0 chr4 11130385 11130456 -144499664 + ID4_ SINE ID 34 104 -48 3 669 22 35 0 0 chr4 11131576 11131605 -144498515 + AT_rich Low_complexity Low_complexity 1 29 0 3 669 805 175 44 0 chr4 11133621 11133758 -144496362 + B1_Mur2 SINE Alu 1 143 -6 3 669 3467 184 149 13 chr4 11133773 11134604 -144495516 + Lx9 LINE L1 6449 7392 -252 3 669 240 185 46 0 chr4 11134668 11134733 -144495387 + Lx9 LINE L1 7535 7602 -42 3 669 504 265 104 63 chr4 11134733 11135003 -144495117 + B4 SINE B4 1 281 -11 3 669 531 272 23 39 chr4 11135240 11135370 -144494750 + RSINE1 SINE B4 9 136 -29 3 669 303 265 319 29 chr4 11135517 11135758 -144494362 - L2a LINE L2 -159 3267 2957 3 669 234 0 0 0 chr4 11136427 11136453 -144493667 + (A)n Simple_repeat Simple_repeat 1 26 0 3 669 183 26 24 71 chr4 11136490 11136532 -144493588 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 669 778 218 22 70 chr4 11136683 11136910 -144493210 - B3 SINE B2 0 216 1 3 669 1552 52 16 0 chr4 11137348 11137540 -144492580 + B2_Mm2 SINE B2 1 195 0 3 669 4045 29 19 0 chr4 11137555 11138031 -144492089 + L1Md_F2 LINE L1 6084 6568 -14 3 669 876 68 73 36 chr4 11138107 11138244 -144491876 + B1_Mur4 SINE Alu 9 150 0 3 669 507 323 98 3 chr4 11138281 11138616 -144491504 - L1MB7 LINE L1 -80 6104 5738 3 669 293 290 49 28 chr4 11139117 11139259 -144490861 + L1MC1 LINE L1 6176 6320 -13 3 669 1354 93 0 10 chr4 11139495 11139691 -144490429 + B2_Mm2 SINE B2 2 195 0 3 669 668 168 65 14 chr4 11139959 11140098 -144490022 + B1_Mus2 SINE Alu 1 146 -1 3 669 336 225 33 130 chr4 11140149 11140241 -144489879 - PB1D7 SINE Alu -31 89 7 3 669 288 248 168 71 chr4 11140241 11140259 -144489861 - ID_B1 SINE B4 -23 198 78 3 669 370 252 45 0 chr4 11140597 11140708 -144489412 + PB1D10 SINE Alu 2 117 0 3 83 471 234 103 0 chr4 11141047 11141154 -144488966 + RSINE1 SINE B4 14 131 -34 3 670 333 0 0 0 chr4 11141155 11141192 -144488928 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 670 206 121 0 0 chr4 11141390 11141423 -144488697 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 3 670 916 85 92 0 chr4 11141423 11141553 -144488567 - B1_Mus1 SINE Alu -4 144 3 3 670 619 179 130 0 chr4 11141713 11141836 -144488284 + B1_Mus1 SINE Alu 1 139 -9 3 670 396 300 108 0 chr4 11141882 11142002 -144488118 + ID_B1 SINE B4 82 214 -10 3 670 26 30 0 0 chr4 11142063 11142096 -144488024 + AT_rich Low_complexity Low_complexity 1 33 0 3 670 548 246 98 0 chr4 11142294 11142416 -144487704 - B1F SINE Alu -9 140 7 3 670 238 205 11 161 chr4 11142496 11142515 -144487605 - BC1_Mm scRNA scRNA -73 79 1 3 670 439 216 0 0 chr4 11142515 11142589 -144487531 - RSINE1 SINE B4 -90 75 2 3 670 593 293 30 50 chr4 11142637 11142838 -144487282 + B3A SINE B2 2 198 0 3 670 1171 131 5 26 chr4 11142849 11143038 -144487082 + B2_Mm2 SINE B2 2 186 -9 3 670 189 0 0 0 chr4 11143056 11143077 -144487043 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 670 381 204 251 32 chr4 11143141 11143292 -144486828 + B3A SINE B2 20 198 0 3 670 21 57 0 0 chr4 11143292 11143327 -144486793 + AT_rich Low_complexity Low_complexity 1 35 0 3 670 586 145 56 8 chr4 11143327 11143452 -144486668 + RMER1B Other Other 933 1063 -3 3 670 263 212 61 0 chr4 11144577 11144643 -144485477 - B1F2 SINE Alu -68 81 12 3 670 236 387 31 43 chr4 11144710 11144872 -144485248 + RMER4A LTR ERVK 8 167 -299 3 670 271 230 17 130 chr4 11145211 11145326 -144484794 + MT2B2 LTR ERVL 154 255 -329 3 670 386 298 19 0 chr4 11145234 11145338 -144484782 + PB1D10 SINE Alu 6 111 -6 3 670 1203 41 0 13 chr4 11145435 11145584 -144484536 - B1_Mus2 SINE Alu 0 147 1 3 670 698 164 88 15 chr4 11146078 11146214 -144483906 - B1_Mus1 SINE Alu 0 148 3 3 670 383 318 54 9 chr4 11146730 11146841 -144483279 - PB1D7 SINE Alu -3 117 2 3 670 383 225 41 90 chr4 11147166 11147184 -144482936 + MT2B LTR ERVL 149 160 -441 3 670 561 196 109 36 chr4 11147184 11147322 -144482798 + B1_Mus1 SINE Alu 1 148 0 3 670 468 300 15 23 chr4 11147450 11147583 -144482537 + RSINE1 SINE B4 3 134 -31 3 670 439 295 107 0 chr4 11147768 11147880 -144482240 - RSINE1 SINE B4 -37 128 5 3 670 711 158 36 29 chr4 11147903 11148040 -144482080 - B1_Mur2 SINE Alu -7 142 5 4 670 227 316 24 37 chr4 11148073 11148155 -144481965 - ID4_ SINE ID 0 83 3 4 670 431 262 68 0 chr4 11148573 11148676 -144481444 - RSINE1 SINE B4 -51 114 5 4 670 373 304 0 168 chr4 11148841 11149043 -144481077 + B4A SINE B4 3 170 -122 4 670 355 311 37 15 chr4 11149410 11149544 -144480576 + B1F SINE Alu 5 141 -8 4 670 1059 184 45 0 chr4 11149974 11150175 -144479945 + B3 SINE B2 1 210 -6 4 670 254 256 12 60 chr4 11150582 11150665 -144479455 + PB1D10 SINE Alu 30 108 -9 4 670 223 297 62 0 chr4 11150671 11150735 -144479385 - ID SINE ID -149 75 8 4 670 506 294 39 8 chr4 11151063 11151190 -144478930 + ID_B1 SINE B4 81 211 -13 4 670 203 88 29 0 chr4 11151190 11151224 -144478896 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 4 670 732 192 40 20 chr4 11151417 11151566 -144478554 - B3 SINE B2 -64 152 1 4 670 398 208 24 3 chr4 11151734 11151830 -144478290 - B1_Mur4 SINE Alu -49 100 3 4 670 1273 7 0 13 chr4 11151866 11152015 -144478105 + B1_Mus2 SINE Alu 1 147 0 4 670 502 208 139 31 chr4 11153456 11153585 -144476535 - B1_Mur2 SINE Alu -1 148 6 4 670 340 276 157 52 chr4 11153761 11153933 -144476187 + B3A SINE B2 9 198 0 4 670 306 271 227 25 chr4 11154022 11154221 -144475899 - B4A SINE B4 -50 242 4 4 670 210 37 0 0 chr4 11154378 11154405 -144475715 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 670 237 182 0 22 chr4 11154668 11154713 -144475407 - MIRb SINE MIR -101 167 124 4 670 935 128 13 13 chr4 11155013 11155163 -144474957 + B1_Mur4 SINE Alu 1 150 0 4 670 368 318 151 9 chr4 11155341 11155566 -144474554 + Lx8 LINE L1 7155 7411 -62 4 670 251 333 12 0 chr4 11155590 11155671 -144474449 + ID4_ SINE ID 2 83 0 4 670 261 365 104 14 chr4 11155708 11155919 -144474201 + Charlie23a DNA MER1_type 95 324 -15 4 670 396 0 0 0 chr4 11156345 11156389 -144473731 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 670 279 336 83 9 chr4 11156567 11156675 -144473445 - RSINE1 SINE B4 -12 153 38 4 670 1221 98 54 5 chr4 11156712 11156897 -144473223 + B2_Mm2 SINE B2 1 194 -1 4 670 791 224 7 0 chr4 11157884 11158027 -144472093 + B3A SINE B2 13 156 -42 4 670 321 26 0 0 chr4 11158030 11158068 -144472052 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 670 386 296 31 0 chr4 11158202 11158300 -144471820 + PB1D9 SINE Alu 1 101 -19 4 670 352 304 17 34 chr4 11158401 11158520 -144471600 + PB1D10 SINE Alu 1 117 0 4 670 322 290 100 0 chr4 11158592 11158692 -144471428 + RSINE1 SINE B4 56 165 0 4 670 180 77 0 0 chr4 11158949 11158975 -144471145 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 670 760 228 40 30 chr4 11158979 11159178 -144470942 - B3 SINE B2 -15 201 1 4 670 1232 34 0 0 chr4 11159329 11159476 -144470644 + B1_Mm SINE Alu 1 147 0 4 670 845 256 28 5 chr4 11159704 11159920 -144470200 - ID_B1 SINE B4 -2 222 2 4 670 277 333 0 0 chr4 11160001 11160022 -144470098 + B4A SINE B4 61 81 -143 4 670 321 306 35 43 chr4 11160022 11160138 -144469982 + PB1D10 SINE Alu 1 115 -2 4 670 438 362 44 81 chr4 11160149 11160432 -144469688 + B4A SINE B4 19 292 0 4 670 354 45 0 0 chr4 11160579 11160623 -144469497 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 670 666 217 42 0 chr4 11160692 11160835 -144469285 + B1_Mur2 SINE Alu 1 149 0 4 670 738 198 62 53 chr4 11160865 11161073 -144469047 + B3 SINE B2 1 210 -6 4 670 519 250 0 0 chr4 11161077 11161177 -144468943 + B1_Mur2 SINE Alu 1 100 -49 4 670 228 333 0 56 chr4 11161113 11161202 -144468918 + LTR40a LTR ERVL 115 198 -321 4 670 186 43 0 0 chr4 11161421 11161444 -144468676 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 670 389 228 35 0 chr4 11161466 11161611 -144468509 + GA-rich Low_complexity Low_complexity 2 151 0 4 670 798 213 89 16 chr4 11162112 11162303 -144467817 + B3 SINE B2 2 206 -10 4 670 847 196 21 38 chr4 11162342 11162528 -144467592 + B2_Mm2 SINE B2 8 190 -5 4 670 234 0 0 0 chr4 11162788 11162814 -144467306 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 670 304 329 105 20 chr4 11162841 11162993 -144467127 + ID_B1 SINE B4 3 167 -57 4 670 25 0 0 0 chr4 11162993 11163018 -144467102 + AT_rich Low_complexity Low_complexity 1 25 0 4 670 250 319 76 11 chr4 11163200 11163292 -144466828 + B1F SINE Alu 19 116 -33 4 670 224 30 30 0 chr4 11163388 11163421 -144466699 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 670 22 0 0 0 chr4 11163425 11163447 -144466673 + AT_rich Low_complexity Low_complexity 1 22 0 4 670 719 218 71 27 chr4 11163964 11164148 -144465972 - B2_Mm2 SINE B2 -3 192 1 4 670 736 199 37 0 chr4 11164284 11164420 -144465700 - B1_Mur1 SINE Alu -8 141 1 4 670 30 45 0 0 chr4 11164424 11164468 -144465652 + AT_rich Low_complexity Low_complexity 1 44 0 4 670 1177 174 5 0 chr4 11164502 11164697 -144465423 - URR1A DNA MER1_type -1 225 30 4 670 273 179 0 0 chr4 11164842 11164861 -144465259 + A-rich Low_complexity Low_complexity 1 19 0 4 670 721 167 26 77 chr4 11164861 11165017 -144465103 + B1_Mus1 SINE Alu 1 148 0 4 670 273 179 0 0 chr4 11165017 11165064 -144465056 + A-rich Low_complexity Low_complexity 20 66 0 4 670 25 31 0 0 chr4 11165251 11165283 -144464837 + AT_rich Low_complexity Low_complexity 1 32 0 4 670 581 186 84 8 chr4 11165283 11165402 -144464718 + B3 SINE B2 1 128 -88 4 670 21 57 0 0 chr4 11165422 11165457 -144464663 + AT_rich Low_complexity Low_complexity 1 35 0 4 670 879 158 48 27 chr4 11165457 11165645 -144464475 + B2_Mm2 SINE B2 4 195 0 4 670 480 256 121 23 chr4 11165649 11165781 -144464339 + B1_Mus2 SINE Alu 1 145 -2 4 670 242 257 140 98 chr4 11165788 11165952 -144464168 + MT2B LTR ERVL 95 265 -336 4 670 351 231 151 82 chr4 11165836 11165982 -144464138 + B4 SINE B4 68 223 -69 4 670 781 65 103 1 chr4 11165853 11165983 -144464137 + B1_Mm SINE Alu 5 146 -2 4 670 915 76 0 0 chr4 11166160 11166278 -144463842 + B1_Mm SINE Alu 22 139 -8 4 670 242 0 61 0 chr4 11166278 11166311 -144463809 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 670 263 361 103 0 chr4 11166743 11166840 -144463280 + MER58B DNA MER1_type 1 107 -234 4 670 666 251 52 12 chr4 11167457 11167630 -144462490 + B3A SINE B2 1 180 -18 4 670 403 250 76 59 chr4 11167677 11167796 -144462324 - B1_Mur2 SINE Alu -28 121 1 4 670 648 274 55 15 chr4 11167796 11167965 -144462155 + MTE2a LTR MaLR 203 379 0 4 670 2382 133 72 24 chr4 11167970 11168346 -144461774 + ORR1B1 LTR MaLR 1 394 0 4 670 319 258 15 0 chr4 11168440 11168506 -144461614 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 4 670 475 187 319 9 chr4 11168507 11168620 -144461500 + B1_Mur1 SINE Alu 1 148 -1 4 670 318 205 333 0 chr4 11168885 11168963 -144461157 + B1_Mur4 SINE Alu 5 108 -42 4 670 1144 41 13 40 chr4 11168963 11169114 -144461006 + B1_Mm SINE Alu 1 147 0 4 670 257 100 0 20 chr4 11169126 11169177 -144460943 + (CAAAAA)n Simple_repeat Simple_repeat 2 51 0 4 670 325 111 0 18 chr4 11169177 11169232 -144460888 + B1_Mus2 SINE Alu 94 147 0 4 670 761 163 82 0 chr4 11169274 11169409 -144460711 - B1_Mm SINE Alu -1 146 1 4 670 685 274 26 36 chr4 11170152 11170345 -144459775 - ID_B1 SINE B4 -33 191 1 4 670 1635 43 16 0 chr4 11170506 11170690 -144459430 - B2_Mm2 SINE B2 -6 189 3 4 670 449 195 15 126 chr4 11170890 11171025 -144459095 + MT2B LTR ERVL 145 264 -337 4 670 973 121 14 0 chr4 11170919 11171060 -144459060 + B1_Mur3 SINE Alu 7 149 0 4 670 843 226 129 16 chr4 11171228 11171421 -144458699 - B3 SINE B2 0 216 2 4 670 1546 182 117 17 chr4 11171430 11171788 -144458332 - MTD LTR MaLR -14 405 12 4 670 539 129 102 1 chr4 11171891 11172000 -144458120 - B1_Mur3 SINE Alu -20 129 12 4 670 312 173 82 109 chr4 11171907 11172017 -144458103 - MT2B LTR ERVL -337 264 158 4 670 1498 79 11 5 chr4 11172086 11172276 -144457844 + B2_Mm1t SINE B2 1 191 -2 4 670 1340 79 44 11 chr4 11172507 11172687 -144457433 + B2_Mm2 SINE B2 2 187 -8 4 670 189 0 0 0 chr4 11172813 11172834 -144457286 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 4 670 640 206 122 73 chr4 11173716 11173920 -144456200 + B3 SINE B2 1 214 -2 4 670 590 218 39 46 chr4 11173927 11174057 -144456063 + B1F2 SINE Alu 9 137 -12 4 670 21 0 0 0 chr4 11174058 11174079 -144456041 + GC_rich Low_complexity Low_complexity 1 21 0 4 670 751 207 21 6 chr4 11174100 11174275 -144455845 + B3 SINE B2 1 185 -10 4 670 299 292 47 9 chr4 11175730 11175837 -144454283 - PB1D7 SINE Alu -8 112 2 4 670 429 200 106 39 chr4 11175880 11175984 -144454136 + B1_Mur2 SINE Alu 29 139 -10 4 670 207 100 0 0 chr4 11176018 11176048 -144454072 + (A)n Simple_repeat Simple_repeat 1 30 0 4 670 227 329 26 13 chr4 11176087 11176164 -144453956 + ID4_ SINE ID 3 80 -3 4 670 408 304 59 7 chr4 11176288 11176412 -144453708 + ID_B1 SINE B4 81 212 -12 5 670 1161 81 0 33 chr4 11176412 11176565 -144453555 + B1_Mus1 SINE Alu 1 148 0 5 670 408 304 59 7 chr4 11176565 11176576 -144453544 + ID_B1 SINE B4 213 223 -1 5 670 810 201 133 36 chr4 11176805 11177001 -144453119 + B3 SINE B2 2 216 0 5 670 6983 60 14 0 chr4 11177004 11177901 -144452219 + L1_Mus1 LINE L1 5682 6567 0 5 670 614 187 153 8 chr4 11177902 11178026 -144452094 + B1_Mus1 SINE Alu 2 143 -5 5 670 1484 84 16 10 chr4 11178037 11178229 -144451891 + B2_Mm2 SINE B2 2 194 -1 5 670 500 238 19 19 chr4 11178322 11178429 -144451691 - PB1D10 SINE Alu -10 107 1 5 670 436 282 8 17 chr4 11178518 11178637 -144451483 + ID_B1 SINE B4 107 224 0 5 670 483 176 0 0 chr4 11178640 11178731 -144451389 + GA-rich Low_complexity Low_complexity 3 93 0 5 670 954 122 0 0 chr4 11178735 11178883 -144451237 + (GA)n Simple_repeat Simple_repeat 2 149 0 5 670 882 197 116 5 chr4 11178896 11179085 -144451035 + B3 SINE B2 1 210 -6 5 670 253 302 23 11 chr4 11179669 11179756 -144450364 - PB1 SINE Alu -22 105 18 5 670 201 147 0 0 chr4 11181096 11181130 -144448990 + (CCCG)n Simple_repeat Simple_repeat 1 34 0 5 670 208 226 19 0 chr4 11181238 11181291 -144448829 + (CCG)n Simple_repeat Simple_repeat 1 54 0 5 670 780 48 0 19 chr4 11181714 11181819 -144448301 + BC1_Mm scRNA scRNA 1 103 -49 5 670 223 289 226 12 chr4 11181964 11182048 -144448072 + B1F2 SINE Alu 1 102 -47 5 670 222 283 0 175 chr4 11182048 11182079 -144448041 + B4A SINE B4 86 179 -113 5 670 604 225 46 8 chr4 11182251 11182381 -144447739 - B1F SINE Alu 0 149 15 5 670 1764 37 0 0 chr4 11182431 11182622 -144447498 - B2_Mm1a SINE B2 -2 191 1 5 670 1214 74 0 20 chr4 11182728 11182879 -144447241 + B1_Mus1 SINE Alu 1 148 0 5 670 333 250 93 28 chr4 11183636 11183743 -144446377 + PB1D10 SINE Alu 3 116 -1 5 670 198 167 0 0 chr4 11183794 11183830 -144446290 + CT-rich Low_complexity Low_complexity 2 37 0 5 670 1133 166 80 10 chr4 11183852 11184053 -144446067 + B3 SINE B2 1 215 -1 5 670 225 222 0 0 chr4 11184119 11184164 -144445956 - B3A SINE B2 -127 71 27 5 670 317 290 88 44 chr4 11184163 11184176 -144445944 - ID_B1 SINE B4 0 224 203 5 670 504 0 0 0 chr4 11184176 11184232 -144445888 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 670 317 290 88 44 chr4 11184232 11184355 -144445765 - ID_B1 SINE B4 -22 202 83 5 670 1335 220 171 11 chr4 11184448 11184798 -144445322 + MTD LTR MaLR 6 411 -8 5 670 1854 186 68 14 chr4 11184829 11185184 -144444936 + ORR1D1 LTR MaLR 1 374 0 5 670 342 310 96 22 chr4 11185194 11185372 -144444748 + Charlie10 DNA MER1_type 70 260 -2562 5 670 463 206 30 20 chr4 11185746 11185845 -144444275 - B1_Mur2 SINE Alu 0 149 50 5 670 304 254 30 0 chr4 11185880 11185947 -144444173 + ID4 SINE ID 5 73 -10 5 670 392 206 0 14 chr4 11186398 11186467 -144443653 + ID4 SINE ID 2 69 -14 5 670 340 344 16 8 chr4 11186507 11186636 -144443484 + B3 SINE B2 50 179 -37 5 670 31 0 0 0 chr4 11186640 11186671 -144443449 + AT_rich Low_complexity Low_complexity 1 31 0 5 670 1728 180 6 39 chr4 11186678 11187008 -144443112 - RMER6B LTR ERVK -2 459 141 5 670 484 150 12 0 chr4 11187012 11187092 -144443028 + B1_Mus2 SINE Alu 66 146 -1 5 670 261 139 0 0 chr4 11187096 11187139 -144442981 + (GGGGA)n Simple_repeat Simple_repeat 5 47 0 5 670 270 176 0 0 chr4 11187143 11187194 -144442926 + A-rich Low_complexity Low_complexity 1 51 0 5 670 959 137 232 11 chr4 11187205 11187382 -144442738 + B3 SINE B2 1 216 0 5 670 706 170 122 7 chr4 11187497 11187645 -144442475 + URR1B DNA MER1_type 1 165 -60 5 670 2774 44 0 0 chr4 11187645 11187983 -144442137 + ORR1A1 LTR MaLR 1 338 -8 5 670 399 109 15 15 chr4 11187987 11188052 -144442068 + URR1B DNA MER1_type 161 225 0 5 670 772 257 98 26 chr4 11188056 11188431 -144441689 + L1MB7 LINE L1 5765 6168 -16 5 670 468 209 22 224 chr4 11189185 11189246 -144440874 - B1F1 SINE Alu -5 144 3 5 670 574 250 0 8 chr4 11189246 11189363 -144440757 - ID_B1 SINE B4 -25 199 84 5 670 334 86 57 0 chr4 11189800 11189870 -144440250 + (TCTG)n Simple_repeat Simple_repeat 2 75 0 5 670 212 286 0 0 chr4 11190231 11190287 -144439833 - ID4 SINE ID -3 80 25 5 670 267 186 0 0 chr4 11190289 11190332 -144439788 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 670 274 278 0 27 chr4 11190857 11190931 -144439189 - ID4 SINE ID -9 74 3 5 670 635 209 0 17 chr4 11191014 11191131 -144438989 - B1_Mus2 SINE Alu -30 117 3 5 670 851 144 7 29 chr4 11191841 11191977 -144438143 - B1_Mur2 SINE Alu -16 133 1 5 670 21 0 0 0 chr4 11192204 11192225 -144437895 + AT_rich Low_complexity Low_complexity 1 21 0 5 670 435 125 0 0 chr4 11193580 11193652 -144436468 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 670 257 246 29 0 chr4 11193688 11193757 -144436363 - RSINE1 SINE B4 -93 72 2 5 670 329 229 48 7 chr4 11194078 11194169 -144435951 - B3 SINE B2 0 198 110 5 670 892 36 9 0 chr4 11194176 11194287 -144435833 - B1_Mus1 SINE Alu -30 118 7 5 670 582 284 70 25 chr4 11194287 11194372 -144435748 - B4 SINE B4 -83 206 2 5 670 666 274 11 43 chr4 11195005 11195192 -144434928 + B3A SINE B2 2 182 -16 5 670 25 31 0 0 chr4 11195200 11195232 -144434888 + AT_rich Low_complexity Low_complexity 1 32 0 5 670 613 283 229 12 chr4 11195232 11195653 -144434467 - L1MB8 LINE L1 -17 6161 5655 5 670 919 163 6 39 chr4 11195761 11195780 -144434340 - B2_Mm1t SINE B2 -19 174 156 5 670 297 0 0 0 chr4 11195780 11195813 -144434307 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 5 670 1007 104 0 38 chr4 11195813 11195972 -144434148 - B2_Mm2 SINE B2 -41 154 2 5 670 609 175 31 101 chr4 11195972 11196131 -144433989 - B1_Mur2 SINE Alu -1 148 1 5 670 354 239 82 65 chr4 11196153 11196323 -144433797 - L1M3 LINE L1 -724 5444 5272 5 670 531 45 0 0 chr4 11196536 11196602 -144433518 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 5 670 465 196 67 59 chr4 11196604 11196634 -144433486 - PB1D9 SINE Alu 0 120 89 5 670 627 14 0 0 chr4 11196634 11196706 -144433414 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 670 515 182 11 0 chr4 11196706 11196794 -144433326 - B1_Mur4 SINE Alu -61 89 1 5 670 411 274 16 110 chr4 11197041 11197168 -144432952 + PB1D10 SINE Alu 3 117 0 5 670 192 40 0 0 chr4 11197359 11197384 -144432736 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 670 561 194 28 46 chr4 11197393 11197501 -144432619 - B1_Mur2 SINE Alu -33 116 11 5 670 1296 48 0 0 chr4 11197533 11197680 -144432440 - B1_Mus2 SINE Alu 0 147 1 5 670 1777 26 0 0 chr4 11197702 11197892 -144432228 - B2_Mm1t SINE B2 -3 190 1 5 670 936 211 4 129 chr4 11197912 11198049 -144432071 - B3 SINE B2 -6 210 73 5 670 1194 51 0 0 chr4 11198049 11198186 -144431934 + B1_Mm SINE Alu 2 138 -9 5 670 936 211 4 129 chr4 11198186 11198288 -144431832 - B3 SINE B2 -144 72 1 5 670 861 104 112 0 chr4 11198546 11198680 -144431440 + B1_Mur4 SINE Alu 1 149 -1 5 670 1501 55 50 0 chr4 11198709 11198869 -144431251 + B2_Mm1t SINE B2 1 160 -33 5 670 387 0 0 0 chr4 11198869 11198912 -144431208 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 5 670 1501 55 50 0 chr4 11198912 11198933 -144431187 + B2_Mm1t SINE B2 161 190 -3 5 670 264 320 27 0 chr4 11199145 11199220 -144430900 - ID4_ SINE ID -2 81 5 5 670 781 270 59 17 chr4 11199400 11199637 -144430483 - B4A SINE B4 -40 252 6 5 670 401 252 44 53 chr4 11199911 11200024 -144430096 - B1F1 SINE Alu 0 149 38 5 670 205 299 0 82 chr4 11200404 11200477 -144429643 - L2a LINE L2 -5 3421 3355 5 670 387 75 0 0 chr4 11200507 11200566 -144429554 + B1_Mm SINE Alu 83 141 -8 5 670 300 83 0 0 chr4 11200566 11200614 -144429506 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 670 807 149 67 7 chr4 11200616 11200751 -144429369 + B2_Mm2 SINE B2 27 169 -26 5 670 348 191 0 16 chr4 11200789 11200853 -144429267 + B1_Mur4 SINE Alu 2 64 -86 5 670 251 218 0 35 chr4 11200853 11200896 -144429224 + A-rich Low_complexity Low_complexity 1 43 0 5 670 1137 79 22 0 chr4 11200896 11201035 -144429085 + B1_Mus1 SINE Alu 2 143 -5 5 670 251 218 0 35 chr4 11201035 11201105 -144429015 + A-rich Low_complexity Low_complexity 44 109 0 5 670 252 280 25 62 chr4 11201318 11201363 -144428757 - ID4_ SINE ID -5 78 34 5 670 592 302 43 0 chr4 11201363 11201502 -144428618 + RSINE1 SINE B4 4 148 -17 5 670 252 280 25 62 chr4 11201502 11201536 -144428584 - ID4_ SINE ID -50 33 2 5 670 210 182 0 0 chr4 11201743 11201763 -144428357 + T-rich Low_complexity Low_complexity 25 44 0 5 670 1410 62 67 0 chr4 11201763 11201942 -144428178 - B2_Mm1a SINE B2 -1 192 2 5 670 210 182 0 0 chr4 11201942 11201965 -144428155 + T-rich Low_complexity Low_complexity 2 24 0 5 670 745 124 0 0 chr4 11202001 11202106 -144428014 - B1_Mur3 SINE Alu -8 141 37 5 670 230 188 15 59 chr4 11202051 11202119 -144428001 - 4.5SRNA scRNA scRNA -8 86 22 5 670 375 186 0 14 chr4 11202413 11202484 -144427636 - PB1D9 SINE Alu -18 102 33 5 670 1789 199 87 5 chr4 11202692 11203072 -144427048 + MTD LTR MaLR 1 411 -8 5 670 258 288 104 56 chr4 11203269 11203394 -144426726 + MLT1H LTR MaLR 404 534 -15 5 670 559 244 17 34 chr4 11204587 11204706 -144425414 + PB1D7 SINE Alu 2 118 -2 5 670 661 219 0 0 chr4 11204775 11204894 -144425226 + B1_Mur2 SINE Alu 10 128 -21 6 670 699 221 35 7 chr4 11205321 11205462 -144424658 + B1_Mur1 SINE Alu 5 149 0 6 670 406 257 32 36 chr4 11205476 11205597 -144424523 + B3 SINE B2 1 132 -61 6 670 294 221 0 135 chr4 11205601 11205690 -144424430 + MT2B LTR ERVL 164 240 -361 6 670 595 202 0 9 chr4 11205616 11205726 -144424394 + PB1D9 SINE Alu 12 120 0 6 670 382 275 129 59 chr4 11205944 11206114 -144424006 - B3A SINE B2 -16 182 1 6 670 591 252 26 32 chr4 11206406 11206562 -144423558 - U1 snRNA snRNA -6 159 5 6 670 292 256 73 0 chr4 11206675 11206757 -144423363 - PB1D7 SINE Alu 0 120 33 6 670 305 200 16 16 chr4 11206912 11206973 -144423147 + PB1 SINE Alu 39 99 -28 6 670 246 303 69 60 chr4 11207165 11207281 -144422839 + PB1D10 SINE Alu 1 117 0 6 670 323 289 89 71 chr4 11207311 11207423 -144422697 + PB1D10 SINE Alu 3 116 -1 6 670 213 346 13 0 chr4 11207443 11207521 -144422599 + ID SINE ID 2 80 -144 6 670 1111 96 7 20 chr4 11207724 11207873 -144422247 - B1_Mus2 SINE Alu 0 147 1 6 670 589 216 48 78 chr4 11207925 11208091 -144422029 - RSINE1 SINE B4 -2 163 3 6 670 1122 120 91 6 chr4 11208419 11208595 -144421525 - B2_Mm2 SINE B2 -3 192 2 6 670 433 238 28 19 chr4 11208600 11208707 -144421413 - PB1D9 SINE Alu -3 117 10 6 670 210 118 0 0 chr4 11208719 11208753 -144421367 + (T)n Simple_repeat Simple_repeat 1 34 0 6 670 290 260 134 31 chr4 11208753 11208880 -144421240 - B1F SINE Alu 0 149 10 6 670 228 233 217 0 chr4 11208919 11208979 -144421141 - B1F SINE Alu -66 83 11 6 670 457 250 9 18 chr4 11209003 11209113 -144421007 - ID_B1 SINE B4 -2 222 114 6 670 423 250 13 0 chr4 11209166 11209257 -144420863 + ID4_ SINE ID 8 99 -53 6 670 23 0 0 0 chr4 11209312 11209335 -144420785 + AT_rich Low_complexity Low_complexity 1 23 0 6 670 715 333 139 28 chr4 11209412 11209916 -144420204 + MER77 LTR ERVL 44 603 -4 6 670 322 220 0 0 chr4 11210048 11210107 -144420013 + ID4 SINE ID 23 81 -2 6 670 285 29 0 0 chr4 11210186 11210220 -144419900 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 670 463 173 106 30 chr4 11210357 11210471 -144419649 - B1_Mur1 SINE Alu 0 149 30 6 670 1420 111 0 11 chr4 11210951 11211142 -144418978 - B2_Mm2 SINE B2 -5 190 2 6 670 357 371 86 52 chr4 11211166 11211493 -144418627 + L2b LINE L2 3038 3375 0 6 670 565 304 47 47 chr4 11211575 11211768 -144418352 - B3A SINE B2 -3 195 3 6 670 579 203 50 25 chr4 11211787 11211908 -144418212 - B1_Mus1 SINE Alu -1 147 24 6 670 763 113 172 25 chr4 11211995 11212158 -144417962 + B2_Mm2 SINE B2 1 187 -8 6 670 365 296 104 0 chr4 11212523 11212658 -144417462 - B1F SINE Alu 0 149 1 6 670 311 278 110 110 chr4 11212883 11212992 -144417128 - PB1D10 SINE Alu -6 111 3 6 670 225 207 24 12 chr4 11213043 11213126 -144416994 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 670 326 125 54 0 chr4 11213156 11213212 -144416908 - HAL1-3A_ME LINE L1 -840 2018 1960 6 670 813 199 15 0 chr4 11213215 11213346 -144416774 - B1_Mur3 SINE Alu -12 137 5 6 670 2334 95 31 3 chr4 11213487 11213804 -144416316 - ORR1A2 LTR MaLR -1 326 1 6 670 240 299 23 105 chr4 11213860 11213946 -144416174 + B1F1 SINE Alu 1 79 -70 6 670 303 183 37 0 chr4 11214090 11214172 -144415948 + GA-rich Low_complexity Low_complexity 2 86 0 6 670 710 193 11 11 chr4 11214182 11214360 -144415760 + G-rich Low_complexity Low_complexity 1 178 0 6 670 321 0 135 0 chr4 11214361 11214450 -144415670 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 670 248 250 30 30 chr4 11214473 11214539 -144415581 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 6 670 296 326 105 33 chr4 11215255 11215407 -144414713 + RSINE1 SINE B4 3 165 0 6 670 701 67 0 9 chr4 11215408 11215513 -144414607 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 670 207 0 0 0 chr4 11215513 11215535 -144414585 + (CG)n Simple_repeat Simple_repeat 2 24 0 6 670 262 200 0 0 chr4 11215572 11215617 -144414503 + B3A SINE B2 4 48 -150 6 670 372 162 0 63 chr4 11215742 11215821 -144414299 - ID4_ SINE ID -5 78 5 6 670 881 182 53 0 chr4 11215861 11216031 -144414089 + B3 SINE B2 5 183 -33 6 670 575 205 86 0 chr4 11216032 11216149 -144413971 + B3 SINE B2 86 212 -4 6 670 316 255 116 11 chr4 11216446 11216541 -144413579 - ID_B1 SINE B4 -182 110 6 6 670 278 260 96 0 chr4 11217924 11217997 -144412123 + PB1D10 SINE Alu 32 111 -6 6 670 1075 56 0 47 chr4 11218010 11218159 -144411961 + B1_Mus1 SINE Alu 6 147 -1 6 670 490 254 95 22 chr4 11218165 11218302 -144411818 + ID_B1 SINE B4 3 149 -75 6 670 829 162 55 27 chr4 11218305 11218451 -144411669 + B1_Mur4 SINE Alu 1 150 0 6 670 1607 43 22 0 chr4 11218454 11218639 -144411481 + B2_Mm1t SINE B2 2 190 -3 6 670 454 196 78 10 chr4 11218716 11218819 -144411301 + B3 SINE B2 104 213 -3 6 670 642 258 30 35 chr4 11218859 11219056 -144411064 + B3A SINE B2 1 196 -2 6 670 217 308 0 19 chr4 11219482 11219535 -144410585 - ID4_ SINE ID -29 54 3 6 670 652 212 86 21 chr4 11219898 11220038 -144410082 + B1_Mur2 SINE Alu 1 149 0 6 670 180 0 0 0 chr4 11220060 11220080 -144410040 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 670 1313 41 0 7 chr4 11220209 11220357 -144409763 + B1_Mus1 SINE Alu 2 148 0 6 670 196 53 53 0 chr4 11220357 11220395 -144409725 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 6 670 1407 88 22 6 chr4 11220431 11220613 -144409507 - B2_Mm2 SINE B2 -9 186 2 6 670 251 270 149 0 chr4 11220854 11220928 -144409192 + PB1D10 SINE Alu 1 85 -32 6 670 262 341 0 74 chr4 11221428 11221523 -144408597 - PB1D10 SINE Alu -29 88 1 6 670 338 262 79 97 chr4 11221561 11221573 -144408547 - B1F SINE Alu -5 112 81 6 670 394 184 66 0 chr4 11221573 11221649 -144408471 - ID_B1 SINE B4 -35 189 109 6 670 338 262 79 97 chr4 11221649 11221675 -144408445 - B1F SINE Alu -5 80 1 6 670 953 161 0 39 chr4 11221766 11221921 -144408199 - B1_Mur2 SINE Alu 0 149 1 6 670 244 82 65 16 chr4 11221946 11222008 -144408112 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 670 214 262 157 60 chr4 11222886 11223020 -144407100 + B1F1 SINE Alu 1 147 -2 6 670 1151 162 10 0 chr4 11223296 11223483 -144406637 - B3 SINE B2 -5 211 23 6 670 374 297 0 126 chr4 11223483 11223618 -144406502 + PB1D7 SINE Alu 2 119 -1 6 670 341 224 184 0 chr4 11223740 11223838 -144406282 + RSINE1 SINE B4 15 130 -35 6 670 420 204 68 0 chr4 11223953 11224056 -144406064 - MLT1A0 LTR MaLR 0 365 256 6 670 1282 27 0 0 chr4 11224423 11224570 -144405550 + B1_Mus2 SINE Alu 1 147 0 6 670 234 91 0 0 chr4 11224570 11224603 -144405517 + (A)n Simple_repeat Simple_repeat 1 33 0 6 670 563 201 10 23 chr4 11224610 11224758 -144405362 + B1_Mur2 SINE Alu 2 149 0 6 670 626 296 35 24 chr4 11225223 11225562 -144404558 + RLTR15 LTR ERVK 1 343 -16 6 670 441 0 0 0 chr4 11226290 11226339 -144403781 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 670 250 265 68 34 chr4 11226364 11226452 -144403668 + ID2 SINE ID 11 98 -54 6 670 892 205 78 20 chr4 11226746 11226950 -144403170 + B3 SINE B2 1 216 0 6 670 549 110 0 0 chr4 11227529 11227611 -144402509 + (CGTG)n Simple_repeat Simple_repeat 2 83 0 6 670 270 0 0 0 chr4 11227654 11227684 -144402436 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 670 233 318 57 34 chr4 11227892 11227907 -144402213 - PB1 SINE Alu -36 91 3 6 670 316 278 28 0 chr4 11227907 11227979 -144402141 - ID_B1 SINE B4 -67 157 84 6 670 12311 60 4 1 chr4 11228008 11230222 -144399898 - L1Md_F2 LINE L1 -11 6571 4350 6 670 349 237 103 0 chr4 11230696 11230793 -144399327 + B3A SINE B2 2 108 -90 6 670 772 133 84 0 chr4 11230798 11230941 -144399179 - URR1A DNA MER1_type 0 226 72 6 670 465 238 38 0 chr4 11230958 11231063 -144399057 + B3 SINE B2 108 216 0 6 670 25 0 0 0 chr4 11231063 11231088 -144399032 + AT_rich Low_complexity Low_complexity 1 25 0 6 670 537 221 130 0 chr4 11231876 11232007 -144398113 + B1F1 SINE Alu 1 148 -1 6 670 1339 79 11 0 chr4 11232049 11232226 -144397894 + B2_Mm1t SINE B2 1 179 -14 6 670 388 110 14 0 chr4 11232291 11232356 -144397764 + B2_Mm2 SINE B2 46 116 -82 6 670 234 0 0 0 chr4 11232372 11232398 -144397722 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 670 264 241 116 36 chr4 11232554 11232666 -144397454 + BC1_Mm scRNA scRNA 1 121 -31 6 670 1174 74 0 0 chr4 11232692 11232840 -144397280 + B1_Mus1 SINE Alu 1 148 0 6 670 605 210 14 27 chr4 11232856 11233003 -144397117 + B1_Mur2 SINE Alu 5 149 0 6 670 217 300 14 0 chr4 11233071 11233141 -144396979 - ID2 SINE ID -11 72 2 6 670 207 69 0 0 chr4 11233565 11233594 -144396526 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 670 363 287 24 16 chr4 11233663 11233787 -144396333 - B3A SINE B2 -73 125 1 6 670 586 232 174 0 chr4 11233850 11233988 -144396132 + RSINE1 SINE B4 2 163 -2 6 670 422 195 24 0 chr4 11234064 11234146 -144395974 + PB1D10 SINE Alu 21 104 -13 6 670 608 273 79 51 chr4 11234335 11234551 -144395569 + MLT1A0 LTR MaLR 1 222 -143 7 670 451 245 0 19 chr4 11234564 11234668 -144395452 + B1_Mur2 SINE Alu 4 105 -44 7 670 1212 61 0 0 chr4 11234798 11234945 -144395175 + B1_Mus2 SINE Alu 1 147 0 7 670 577 143 0 98 chr4 11235017 11235149 -144394971 - Lx LINE L1 0 6654 6536 7 670 31 58 0 0 chr4 11235248 11235300 -144394820 + AT_rich Low_complexity Low_complexity 1 52 0 7 670 655 214 29 0 chr4 11235981 11236121 -144393999 - B1_Mur1 SINE Alu -5 144 1 7 670 1429 84 0 5 chr4 11236216 11236407 -144393713 - B2_Mm2 SINE B2 -5 190 1 7 670 370 125 8 67 chr4 11236814 11236934 -144393186 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 7 670 523 236 236 0 chr4 11236960 11237159 -144392961 + L1MC3 LINE L1 7446 7691 -94 7 670 530 279 38 38 chr4 11237168 11237312 -144392808 + RSINE1 SINE B4 2 146 -19 7 670 537 16 0 0 chr4 11237312 11237374 -144392746 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 670 530 279 38 38 chr4 11237374 11237389 -144392731 + RSINE1 SINE B4 147 161 -4 7 670 232 250 0 24 chr4 11237422 11237504 -144392616 + L1MB2 LINE L1 6056 6135 -36 7 670 820 145 13 33 chr4 11237506 11237656 -144392464 + B1_Mus1 SINE Alu 1 147 -1 7 670 34 65 0 0 chr4 11238198 11238260 -144391860 + AT_rich Low_complexity Low_complexity 1 62 0 7 670 766 154 17 0 chr4 11238309 11238426 -144391694 - PB1D9 SINE Alu 0 120 2 7 670 288 296 25 0 chr4 11238499 11238580 -144391540 - ID_B1 SINE B4 -46 178 96 7 670 186 127 17 68 chr4 11238639 11238698 -144391422 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 7 670 579 159 39 31 chr4 11238828 11238958 -144391162 + B1_Mur3 SINE Alu 13 143 -6 7 670 390 42 0 0 chr4 11238959 11239007 -144391113 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 7 670 431 263 45 8 chr4 11239023 11239157 -144390963 + B1F1 SINE Alu 10 148 -1 7 670 201 88 0 0 chr4 11239925 11239931 -144390189 + (A)n Simple_repeat Simple_repeat 1 6 0 7 670 1140 54 0 39 chr4 11239931 11240084 -144390036 + B1_Mus2 SINE Alu 1 147 0 7 670 201 88 0 0 chr4 11240084 11240111 -144390009 + (A)n Simple_repeat Simple_repeat 1 27 0 7 670 664 211 21 14 chr4 11240120 11240264 -144389856 + B1_Mur3 SINE Alu 5 149 0 7 670 234 157 39 0 chr4 11240266 11240317 -144389803 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 7 670 557 221 186 0 chr4 11240465 11240610 -144389510 + B3A SINE B2 1 172 -26 7 670 1084 208 0 0 chr4 11240646 11240848 -144389272 + B3 SINE B2 1 202 -14 7 670 1102 89 7 0 chr4 11241013 11241159 -144388961 - B1_Mus1 SINE Alu 0 148 2 7 670 3710 121 3 24 chr4 11241219 11241797 -144388323 - Lx2 LINE L1 -635 6362 5797 7 670 2497 71 0 0 chr4 11241798 11242108 -144388012 + Lx2 LINE L1 6336 6645 -352 7 670 1457 126 5 9 chr4 11242106 11242330 -144387790 + Lx2 LINE L1 6775 6997 0 7 670 235 301 112 26 chr4 11242504 11242620 -144387500 + MLT1J-int LTR MaLR 1005 1130 -279 7 670 565 290 89 118 chr4 11242677 11242881 -144387239 + MER68 LTR ERVL 25 241 -322 7 670 1171 68 7 0 chr4 11242881 11243027 -144387093 + B1_Mus2 SINE Alu 1 147 0 7 670 565 290 89 118 chr4 11243027 11243205 -144386915 + MER68 LTR ERVL 242 396 -167 7 670 371 237 107 26 chr4 11243312 11243490 -144386630 + MLT1J-int LTR MaLR 1155 1346 -41 7 670 273 219 28 97 chr4 11244043 11244142 -144385978 + ID4 SINE ID 6 101 -51 7 670 298 211 28 14 chr4 11244397 11244469 -144385651 + MER68 LTR ERVL 234 306 -257 7 670 429 211 137 0 chr4 11244886 11244981 -144385139 - PB1D10 SINE Alu 0 117 10 7 670 358 333 35 0 chr4 11244917 11245031 -144385089 - ID_B1 SINE B4 -70 154 37 7 670 207 0 0 0 chr4 11245219 11245242 -144384878 + (T)n Simple_repeat Simple_repeat 1 23 0 7 670 1244 48 0 0 chr4 11245242 11245389 -144384731 - B1_Mm SINE Alu 0 147 1 7 670 1135 172 25 5 chr4 11245932 11246131 -144383989 + Lx9 LINE L1 7086 7288 -356 7 670 719 109 7 81 chr4 11246138 11246271 -144383849 + B1_Mus2 SINE Alu 9 135 -12 7 670 262 0 26 26 chr4 11246271 11246310 -144383810 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 7 670 719 109 7 81 chr4 11246310 11246325 -144383795 + B1_Mus2 SINE Alu 136 146 -1 7 670 1347 178 57 14 chr4 11246325 11246622 -144383498 + Lx9 LINE L1 7326 7635 -9 7 670 28 48 0 0 chr4 11246622 11246664 -144383456 + AT_rich Low_complexity Low_complexity 1 42 0 7 670 504 188 161 0 chr4 11246726 11246838 -144383282 + B1_Mur1 SINE Alu 1 130 -19 7 670 477 112 25 8 chr4 11247028 11247130 -144382990 + B1_Mur4 SINE Alu 11 149 -1 7 670 225 182 23 0 chr4 11247136 11247180 -144382940 + GA-rich Low_complexity Low_complexity 1 45 0 7 670 28 48 0 0 chr4 11249031 11249073 -144381047 + GC_rich Low_complexity Low_complexity 1 42 0 7 670 204 40 0 0 chr4 11249682 11249707 -144380413 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 670 216 266 190 0 chr4 11249707 11249786 -144380334 - PB1D7 SINE Alu -10 110 17 7 670 257 236 27 14 chr4 11249850 11249923 -144380197 + ID_B1 SINE B4 105 178 -46 7 670 590 96 43 9 chr4 11250198 11250314 -144379806 + (TTTC)n Simple_repeat Simple_repeat 3 122 0 7 670 2390 155 31 116 chr4 11250833 11251332 -144378788 + RLTR24 LTR ERV1 2 452 -77 7 670 924 141 209 0 chr4 11251332 11251509 -144378611 + B3 SINE B2 2 215 -1 7 670 2390 155 31 116 chr4 11251509 11251586 -144378534 + RLTR24 LTR ERV1 453 529 0 7 670 25 83 0 0 chr4 11251899 11251959 -144378161 + AT_rich Low_complexity Low_complexity 1 60 0 7 670 452 326 97 0 chr4 11251963 11252159 -144377961 - B3 SINE B2 0 216 2 7 670 491 309 0 7 chr4 11252343 11252480 -144377640 + ID_B1 SINE B4 85 220 -4 7 670 947 170 0 0 chr4 11252869 11253016 -144377104 + B1_Mus1 SINE Alu 2 148 0 7 670 23 33 0 0 chr4 11253028 11253058 -144377062 + AT_rich Low_complexity Low_complexity 1 30 0 7 670 1312 73 50 6 chr4 11253193 11253372 -144376748 + B2_Mm2 SINE B2 1 187 -8 7 670 225 114 0 0 chr4 11253408 11253443 -144376677 + Lx5 LINE L1 7015 7049 -1 7 670 3665 183 29 86 chr4 11253470 11254413 -144375707 + MYSERV6-int LTR ERVK 7848 8736 -223 7 670 1047 37 89 7 chr4 11254419 11254554 -144375566 + B1_Mus2 SINE Alu 1 146 -1 7 670 238 29 0 0 chr4 11254574 11254609 -144375511 + B1_Mus2 SINE Alu 113 147 0 7 670 986 227 90 43 chr4 11254640 11254985 -144375135 + RMER4B LTR ERVK 57 417 -168 7 670 408 188 38 38 chr4 11255109 11255214 -144374906 + MTC LTR MaLR 309 413 -8 7 670 921 257 135 38 chr4 11255225 11255751 -144374369 + Lx7 LINE L1 7120 7696 0 7 670 414 244 11 0 chr4 11255917 11256007 -144374113 - B1_Mur4 SINE Alu -40 110 20 7 670 180 0 0 0 chr4 11256282 11256302 -144373818 + (T)n Simple_repeat Simple_repeat 1 20 0 7 670 1055 64 0 0 chr4 11256302 11256443 -144373677 - B1_Mm SINE Alu 0 147 7 7 670 218 148 0 85 chr4 11256446 11256505 -144373615 + T-rich Low_complexity Low_complexity 1 54 0 7 670 2559 48 3 0 chr4 11256585 11256899 -144373221 - L1Md_F3 LINE L1 -2 6582 6268 7 670 1415 94 5 0 chr4 11256912 11257104 -144373016 - B2_Mm1a SINE B2 0 193 1 7 670 453 190 0 99 chr4 11257258 11257369 -144372751 + ORR1D1 LTR MaLR 275 374 0 7 670 769 126 8 8 chr4 11257599 11257727 -144372393 - B2_Mm2 SINE B2 -66 129 2 7 670 214 336 54 9 chr4 11257843 11257954 -144372166 - RSINE1 SINE B4 -47 118 3 7 670 1198 49 0 0 chr4 11258117 11258259 -144371861 - B1_Mm SINE Alu -5 142 1 7 670 677 154 98 15 chr4 11258529 11258661 -144371459 - B1_Mur3 SINE Alu -4 145 3 7 670 282 158 18 0 chr4 11260002 11260059 -144370061 - ID4_ SINE ID -23 60 3 7 670 430 277 27 0 chr4 11260916 11261028 -144369092 + PB1D9 SINE Alu 2 116 -4 7 670 552 258 80 6 chr4 11261058 11261198 -144368922 + B3A SINE B2 2 143 -55 7 670 216 0 0 0 chr4 11261198 11261222 -144368898 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 670 240 352 25 94 chr4 11261222 11261282 -144368838 + B2_Mm1t SINE B2 135 187 -6 7 670 462 195 93 8 chr4 11261416 11261545 -144368575 + URR1B DNA MER1_type 86 225 0 7 670 257 221 56 56 chr4 11261567 11261639 -144368481 - ID_B1 SINE B4 -129 95 24 7 670 235 231 200 0 chr4 11261582 11261647 -144368473 - ID4 SINE ID -5 78 1 7 670 291 325 103 26 chr4 11261705 11261822 -144368298 + MER2 DNA MER2_type 7 132 -213 7 670 822 185 7 20 chr4 11261840 11261989 -144368131 - B1_Mus2 SINE Alu 0 147 1 7 670 649 262 25 35 chr4 11262002 11262200 -144367920 - B3A SINE B2 -1 197 2 7 670 423 276 28 2 chr4 11262250 11262373 -144367747 + B1F1 SINE Alu 2 126 -21 7 670 380 295 48 16 chr4 11262381 11262505 -144367615 + MER2 DNA MER2_type 165 292 -53 7 670 194 152 17 0 chr4 11262880 11262939 -144367181 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 670 212 133 0 0 chr4 11263740 11263770 -144366350 - PB1D7 SINE Alu -86 34 5 7 670 342 292 18 62 chr4 11263804 11263917 -144366203 - PB1D9 SINE Alu 0 120 13 7 670 268 348 45 0 chr4 11264047 11264159 -144365961 - B1F SINE Alu -24 125 9 7 670 246 272 37 12 chr4 11264168 11264250 -144365870 + B3 SINE B2 127 210 -6 7 670 281 247 26 52 chr4 11265200 11265277 -144364843 - PB1 SINE Alu 0 127 53 7 670 22 35 0 0 chr4 11265325 11265354 -144364766 + AT_rich Low_complexity Low_complexity 1 29 0 7 670 422 284 121 0 chr4 11265362 11265478 -144364642 - RSINE1 SINE B4 -32 133 4 7 670 300 237 35 0 chr4 11265494 11265608 -144364512 + GA-rich Low_complexity Low_complexity 4 121 0 7 670 809 165 31 62 chr4 11266238 11266432 -144363688 - B2_Mm2 SINE B2 -6 189 2 7 670 307 278 10 40 chr4 11266876 11266977 -144363143 - PB1D10 SINE Alu -12 105 8 7 670 664 253 13 6 chr4 11266900 11267059 -144363061 - ID_B1 SINE B4 -59 165 6 7 670 783 188 13 46 chr4 11267372 11267523 -144362597 - B1_Mur2 SINE Alu -3 146 1 7 670 340 257 28 56 chr4 11267739 11267846 -144362274 + PB1D9 SINE Alu 1 104 -16 8 670 267 273 78 39 chr4 11268200 11268303 -144361817 + B1F2 SINE Alu 34 140 -9 8 670 311 300 38 0 chr4 11268507 11268587 -144361533 - RSINE1 SINE B4 -14 151 69 8 670 279 0 0 0 chr4 11270128 11270159 -144359961 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 670 378 269 9 28 chr4 11270177 11270284 -144359836 - RSINE1 SINE B4 -33 132 28 8 670 767 190 0 7 chr4 11270324 11270467 -144359653 - B1_Mus1 SINE Alu -6 142 1 8 670 520 211 110 22 chr4 11270486 11270622 -144359498 + B1_Mur2 SINE Alu 1 148 -1 8 670 783 226 5 63 chr4 11270623 11270845 -144359275 - B3 SINE B2 -7 209 1 8 670 327 187 26 0 chr4 11270865 11270941 -144359179 - PB1D7 SINE Alu 0 120 43 8 671 895 76 122 0 chr4 11272198 11272329 -144357791 + B1_Mm SINE Alu 1 147 0 8 671 784 178 20 20 chr4 11273018 11273167 -144356953 - B1_Mur4 SINE Alu 0 150 2 8 671 285 209 60 0 chr4 11273254 11273321 -144356799 - B3 SINE B2 -130 86 16 8 671 186 133 0 0 chr4 11273594 11273624 -144356496 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 8 671 381 274 124 0 chr4 11273631 11273744 -144356376 + RSINE1 SINE B4 2 128 -37 8 671 217 234 43 0 chr4 11274135 11274182 -144355938 - B1F SINE Alu -86 63 15 8 671 217 250 0 0 chr4 11274189 11274237 -144355883 + ID4_ SINE ID 12 59 -24 8 671 388 319 38 6 chr4 11274259 11274417 -144355703 + B4 SINE B4 15 177 -115 8 671 213 231 0 0 chr4 11274467 11274519 -144355601 + A-rich Low_complexity Low_complexity 1 52 0 8 671 396 0 0 0 chr4 11274765 11274809 -144355311 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 671 566 294 104 31 chr4 11274846 11275106 -144355014 + B4A SINE B4 4 282 -10 8 671 984 285 92 111 chr4 11275763 11276351 -144353769 + Lx8 LINE L1 6865 7441 -32 8 671 929 113 42 14 chr4 11276823 11276966 -144353154 + B1_Mus1 SINE Alu 1 147 -1 8 671 275 254 126 102 chr4 11277152 11277279 -144352841 - RSINE1 SINE B4 0 165 36 8 671 291 302 71 32 chr4 11277341 11277495 -144352625 - ID_B1 SINE B4 -64 160 1 8 671 1129 75 7 0 chr4 11277916 11278063 -144352057 - B1_Mus1 SINE Alu 0 148 1 8 671 541 162 116 58 chr4 11278079 11278217 -144351903 - B1_Mus2 SINE Alu 0 147 2 8 671 314 211 0 25 chr4 11279704 11279805 -144350315 + B1F2 SINE Alu 6 101 -16 8 671 638 265 40 10 chr4 11280716 11280914 -144349206 - B3 SINE B2 -7 209 6 8 671 577 270 0 39 chr4 11281255 11281409 -144348711 + B1F2 SINE Alu 1 148 -1 8 671 303 267 0 0 chr4 11281475 11281550 -144348570 + ID4_ SINE ID 1 75 -8 8 671 222 368 13 0 chr4 11281908 11281984 -144348136 - ID4 SINE ID -5 78 2 8 671 451 267 38 0 chr4 11281990 11282095 -144348025 - PB1D10 SINE Alu -8 109 1 8 671 258 219 188 0 chr4 11282206 11282270 -144347850 + ID4_ SINE ID 2 77 -6 8 671 377 219 8 0 chr4 11282390 11282509 -144347611 + GA-rich Low_complexity Low_complexity 2 121 0 8 671 413 246 90 33 chr4 11282701 11282823 -144347297 - B1_Mur2 SINE Alu -21 129 1 8 671 454 250 47 24 chr4 11283270 11283397 -144346723 + B1F SINE Alu 12 141 -8 8 671 22 0 0 0 chr4 11284229 11284251 -144345869 + AT_rich Low_complexity Low_complexity 1 22 0 8 671 347 272 39 0 chr4 11286532 11286635 -144343485 + MER58B DNA MER1_type 164 270 -71 8 671 1312 86 43 0 chr4 11287339 11287525 -144342595 + B2_Mm2 SINE B2 1 194 -1 8 671 446 221 25 50 chr4 11287603 11287722 -144342398 + B1F2 SINE Alu 15 130 -19 8 671 1377 81 5 16 chr4 11288463 11288652 -144341468 - B2_Mm2 SINE B2 -7 188 2 8 671 1214 62 0 0 chr4 11288795 11288941 -144341179 + B1_Mm SINE Alu 2 147 0 8 671 207 0 0 0 chr4 11288950 11288973 -144341147 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 671 938 142 7 0 chr4 11289364 11289505 -144340615 + B1_Mur3 SINE Alu 2 143 -6 8 671 22 56 0 0 chr4 11290261 11290297 -144339823 + AT_rich Low_complexity Low_complexity 1 36 0 8 671 192 77 0 0 chr4 11290385 11290411 -144339709 + (TAA)n Simple_repeat Simple_repeat 1 26 0 8 671 1087 236 0 9 chr4 11290413 11290631 -144339489 + B3 SINE B2 1 216 0 8 671 399 276 43 0 chr4 11290664 11290780 -144339340 + B1F SINE Alu 13 133 -16 8 671 649 237 139 5 chr4 11290787 11290828 -144339292 + B3 SINE B2 2 50 -166 8 671 1359 106 5 0 chr4 11290828 11291017 -144339103 + B2_Mm1a SINE B2 2 191 -2 8 671 649 237 139 5 chr4 11291017 11291162 -144338958 + B3 SINE B2 51 212 -4 8 671 21 0 0 0 chr4 11291162 11291183 -144338937 + AT_rich Low_complexity Low_complexity 1 21 0 8 671 273 107 0 97 chr4 11291218 11291280 -144338840 + (CAGAGA)n Simple_repeat Simple_repeat 1 56 0 8 671 686 88 9 3 chr4 11291280 11291393 -144338727 + B1_Mus2 SINE Alu 40 147 0 8 671 321 242 45 100 chr4 11291625 11291735 -144338385 + RSINE1 SINE B4 1 104 -61 8 671 417 316 40 0 chr4 11295127 11295279 -144334841 - RSINE1 SINE B4 -5 160 3 8 671 1142 86 62 11 chr4 11295419 11295595 -144334525 - B2_Mm2 SINE B2 -9 186 2 8 671 437 280 152 0 chr4 11297382 11297507 -144332613 - B1_Mur3 SINE Alu -5 144 1 8 671 480 249 24 161 chr4 11298608 11298857 -144331263 + B3 SINE B2 2 216 0 8 671 317 169 172 46 chr4 11298939 11299026 -144331094 + ID_B1 SINE B4 114 211 -13 8 671 707 148 104 0 chr4 11299056 11299191 -144330929 + B1_Mur4 SINE Alu 2 150 0 8 671 420 260 77 118 chr4 11299703 11299873 -144330247 - ID_B1 SINE B4 -52 172 10 8 671 1262 77 71 6 chr4 11300419 11300601 -144329519 + B2_Mm2 SINE B2 1 194 -1 8 671 531 168 16 41 chr4 11300803 11300927 -144329193 - PB1D9 SINE Alu -1 119 1 8 671 237 331 20 105 chr4 11300927 11300963 -144329157 - MT2B LTR ERVL -449 152 130 8 671 446 224 184 0 chr4 11301216 11301341 -144328779 + B1_Mur1 SINE Alu 2 149 0 8 671 541 198 31 16 chr4 11301742 11301870 -144328250 + B1_Mur3 SINE Alu 14 143 -6 8 671 241 26 26 26 chr4 11301891 11301930 -144328190 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 671 513 256 113 26 chr4 11302711 11302924 -144327196 + L1MC1 LINE L1 5593 5827 -506 8 671 705 131 90 49 chr4 11302924 11303068 -144327052 + B1_Mur4 SINE Alu 1 150 0 8 671 513 271 75 24 chr4 11303068 11303096 -144327024 + L1MC1 LINE L1 5828 5852 -481 8 671 270 338 6 51 chr4 11303098 11303254 -144326866 + L1MC1 LINE L1 5815 5963 -370 8 671 237 230 53 13 chr4 11303417 11303492 -144326628 + L1MC1 LINE L1 6249 6326 -7 8 671 216 0 0 0 chr4 11303525 11303549 -144326571 + (T)n Simple_repeat Simple_repeat 1 24 0 8 671 1217 41 0 13 chr4 11303549 11303698 -144326422 - B1_Mm SINE Alu 0 147 1 8 671 22 35 0 0 chr4 11303824 11303853 -144326267 + AT_rich Low_complexity Low_complexity 1 29 0 8 671 401 282 89 0 chr4 11303956 11304080 -144326040 + ID_B1 SINE B4 84 218 -6 8 671 185 0 0 39 chr4 11304898 11304924 -144325196 + (CACCT)n Simple_repeat Simple_repeat 3 27 0 8 671 309 149 137 130 chr4 11305051 11305182 -144324938 - B3A SINE B2 -62 133 2 8 671 744 184 14 29 chr4 11305385 11305525 -144324595 + B1_Mur2 SINE Alu 12 149 0 8 671 1043 52 0 42 chr4 11305720 11305862 -144324258 + B1_Mus2 SINE Alu 1 136 -11 8 671 327 257 8 34 chr4 11306230 11306347 -144323773 + B1_Mur1 SINE Alu 1 114 -35 8 671 254 291 53 30 chr4 11306347 11306361 -144323759 + B4 SINE B4 86 219 -73 8 671 180 0 0 0 chr4 11307084 11307104 -144323016 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 8 671 1147 49 21 0 chr4 11307105 11307248 -144322872 - B1_Mus2 SINE Alu -1 146 1 8 671 523 286 143 21 chr4 11307467 11307656 -144322464 + B3 SINE B2 3 214 -2 8 671 195 69 0 0 chr4 11307664 11307693 -144322427 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 8 671 485 258 31 37 chr4 11307710 11307871 -144322249 + RSINE1 SINE B4 4 163 -2 8 671 423 184 102 0 chr4 11308304 11308402 -144321718 - PB1D9 SINE Alu -6 114 7 8 671 262 304 87 0 chr4 11308435 11308527 -144321593 - ID_B1 SINE B4 -124 100 1 8 671 311 294 59 0 chr4 11308571 11308656 -144321464 - PB1D10 SINE Alu -27 90 1 8 671 428 278 110 7 chr4 11308714 11308859 -144321261 - RSINE1 SINE B4 -3 162 3 8 671 516 262 17 120 chr4 11308947 11309181 -144320939 - B3 SINE B2 -4 212 3 8 671 23 0 0 0 chr4 11309423 11309446 -144320674 + AT_rich Low_complexity Low_complexity 1 23 0 8 671 892 77 15 8 chr4 11309803 11309934 -144320186 + B2_Mm2 SINE B2 1 132 -63 8 671 372 207 27 0 chr4 11309941 11310052 -144320068 + (TA)n Simple_repeat Simple_repeat 1 114 0 8 671 453 174 82 0 chr4 11310715 11310813 -144319307 + PB1D7 SINE Alu 9 114 -6 8 671 218 176 20 0 chr4 11313322 11313373 -144316747 + A-rich Low_complexity Low_complexity 3 54 0 8 671 277 276 0 75 chr4 11314026 11314132 -144315988 + G-rich Low_complexity Low_complexity 2 99 0 8 671 24 53 0 0 chr4 11315853 11315891 -144314229 + AT_rich Low_complexity Low_complexity 1 38 0 8 671 244 239 169 0 chr4 11316101 11316172 -144313948 + B1_Mur3 SINE Alu 42 124 -25 8 671 635 213 217 49 chr4 11316183 11316450 -144313670 - RMER10A LTR ERVL -54 388 77 8 671 481 258 88 0 chr4 11316844 11317003 -144313117 - RMER17C-int LTR ERVK -441 2797 2625 8 671 864 204 13 132 chr4 11317013 11317323 -144312797 - RLTR19-int LTR ERVK -2452 3685 3413 9 671 647 255 0 27 chr4 11317625 11317774 -144312346 - B1_Mm SINE Alu -2 145 1 9 671 256 229 83 12 chr4 11317883 11317967 -144312153 + PB1D7 SINE Alu 23 112 -8 9 671 225 319 80 0 chr4 11318002 11318165 -144311955 + L1MC4 LINE L1 7724 7899 -143 9 671 562 229 126 16 chr4 11318454 11318636 -144311484 - B3 SINE B2 -12 204 3 9 671 570 258 63 25 chr4 11318761 11318920 -144311200 - B3A SINE B2 -33 165 1 9 671 399 70 7 0 chr4 11319471 11319547 -144310573 + B1_Mm SINE Alu 43 147 0 9 671 21 36 0 0 chr4 11320221 11320249 -144309871 + AT_rich Low_complexity Low_complexity 1 28 0 9 671 410 265 93 74 chr4 11321920 11322213 -144307907 - B4A SINE B4 -18 274 2 9 671 377 145 0 0 chr4 11322319 11322381 -144307739 + PB1D9 SINE Alu 59 120 0 9 671 838 237 27 36 chr4 11322614 11322837 -144307283 - ID_B1 SINE B4 -1 223 3 9 671 568 221 45 51 chr4 11322840 11322997 -144307123 - B3A SINE B2 -42 156 1 9 671 1213 54 0 0 chr4 11323020 11323167 -144306953 - B1_Mus2 SINE Alu 0 147 1 9 671 379 319 43 0 chr4 11323176 11323314 -144306806 - B1F SINE Alu -5 144 1 9 671 306 0 0 0 chr4 11323407 11323441 -144306679 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 671 1101 71 14 0 chr4 11323446 11323587 -144306533 - B1_Mur4 SINE Alu -6 144 2 9 671 1481 73 5 0 chr4 11323594 11323786 -144306334 - B2_Mm1a SINE B2 0 193 1 9 671 220 224 0 0 chr4 11323849 11323898 -144306222 + RSINE1 SINE B4 2 50 -115 9 671 224 245 149 47 chr4 11324017 11324124 -144305996 + B3A SINE B2 3 120 -78 9 671 484 293 143 22 chr4 11324035 11324265 -144305855 + B4A SINE B4 13 270 -22 9 671 266 347 29 0 chr4 11324293 11324466 -144305654 + (CATA)n Simple_repeat Simple_repeat 1 178 0 9 671 258 364 29 0 chr4 11324449 11324622 -144305498 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 671 183 156 0 0 chr4 11324885 11324917 -144305203 + CT-rich Low_complexity Low_complexity 4 35 0 9 671 376 263 114 0 chr4 11324927 11325041 -144305079 - B1F1 SINE Alu -2 147 21 9 671 784 275 111 4 chr4 11325056 11325326 -144304794 - L1M4 LINE L1 -513 5671 5373 9 671 388 291 0 28 chr4 11325366 11325472 -144304648 - PB1D10 SINE Alu -9 108 6 9 671 368 289 0 10 chr4 11325649 11325747 -144304373 + PB1D10 SINE Alu 13 109 -8 9 671 270 300 33 0 chr4 11326123 11326213 -144303907 + PB1 SINE Alu 1 93 -34 9 671 230 222 0 0 chr4 11326263 11326308 -144303812 + PB1D9 SINE Alu 1 45 -75 9 671 22 0 0 0 chr4 11326874 11326896 -144303224 + AT_rich Low_complexity Low_complexity 1 22 0 9 671 683 108 11 0 chr4 11326898 11327021 -144303099 - B1_Mur4 SINE Alu 0 150 25 9 671 336 39 20 0 chr4 11326999 11327050 -144303070 + B1_Mus2 SINE Alu 96 147 0 9 671 1174 62 7 0 chr4 11327053 11327199 -144302921 + B1_Mus2 SINE Alu 1 147 0 9 671 225 0 0 0 chr4 11327320 11327345 -144302775 + (G)n Simple_repeat Simple_repeat 1 25 0 9 671 194 0 39 0 chr4 11328992 11329018 -144301102 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 671 729 259 6 6 chr4 11329071 11329230 -144300890 - RSINE1 SINE B4 -4 161 3 9 671 1642 21 21 0 chr4 11329703 11329891 -144300229 + B2_Mm1t SINE B2 2 193 0 9 671 395 295 72 47 chr4 11330515 11330604 -144299516 + ID_B1 SINE B4 10 172 -120 9 671 612 139 61 0 chr4 11330604 11330719 -144299401 + B1_Mus2 SINE Alu 20 141 -6 9 671 395 295 72 47 chr4 11330719 11330774 -144299346 + ID_B1 SINE B4 173 276 -16 9 671 198 167 0 0 chr4 11330805 11330841 -144299279 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 9 671 191 325 91 0 chr4 11331198 11331275 -144298845 - MIRc SINE MIR -42 226 143 9 671 2858 133 84 74 chr4 11331888 11332457 -144297663 - RMER15 LTR ERVL 0 575 1 9 671 333 253 21 21 chr4 11333025 11333122 -144296998 - PB1D10 SINE Alu -20 97 1 9 671 479 269 80 6 chr4 11333181 11333357 -144296763 + B3A SINE B2 6 194 -4 9 671 683 111 0 0 chr4 11333367 11333475 -144296645 + B1_Mm SINE Alu 40 147 0 9 671 480 250 8 46 chr4 11333544 11333674 -144296446 + RSINE1 SINE B4 39 163 -2 9 671 569 249 32 96 chr4 11333688 11333875 -144296245 + B3 SINE B2 37 211 -5 9 671 508 321 88 81 chr4 11334125 11334580 -144295540 - Lx8 LINE L1 -8 7465 7008 9 671 740 296 51 8 chr4 11334653 11334888 -144295232 + MER21B LTR ERV1 5 249 -614 9 671 657 188 6 132 chr4 11334913 11335079 -144295041 - B1F SINE Alu 0 149 5 9 671 688 244 196 59 chr4 11335675 11335997 -144294123 + ORR1D2 LTR MaLR 3 368 -2 9 671 926 143 14 0 chr4 11336621 11336768 -144293352 + B1_Mur4 SINE Alu 2 150 0 9 671 2423 146 16 11 chr4 11336963 11337343 -144292777 - RLTR14 LTR ERV1 0 382 1 9 671 678 204 30 24 chr4 11337888 11338054 -144292066 - B3A SINE B2 -31 167 1 9 671 686 137 122 0 chr4 11338159 11338269 -144291851 + B1_Mus1 SINE Alu 2 120 -28 9 671 243 0 0 0 chr4 11338269 11338296 -144291824 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 9 671 686 137 122 0 chr4 11338296 11338316 -144291804 + B1_Mus1 SINE Alu 121 147 -1 9 671 233 280 106 53 chr4 11338795 11338927 -144291193 - L1MD2 LINE L1 -275 6084 5946 9 671 189 0 0 0 chr4 11339032 11339053 -144291067 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 671 1341 18 0 17 chr4 11339053 11339216 -144290904 - B2_Mm1a SINE B2 -29 164 2 9 671 589 31 9 93 chr4 11339362 11339469 -144290651 - Lx LINE L1 0 6654 6557 9 671 530 194 0 92 chr4 11339558 11339677 -144290443 + B1F SINE Alu 23 130 -19 9 671 983 93 58 0 chr4 11339716 11339855 -144290265 + B1_Mus1 SINE Alu 2 148 0 9 671 251 292 10 20 chr4 11340130 11340228 -144289892 - Charlie22a DNA MER1_type -260 231 135 9 671 305 82 0 20 chr4 11340413 11340463 -144289657 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 671 282 212 14 43 chr4 11340474 11340543 -144289577 - RSINE1 SINE B4 -75 90 24 9 671 216 67 0 0 chr4 11340548 11340578 -144289542 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 671 3381 33 8 0 chr4 11340598 11340991 -144289129 + MTA_Mm LTR MaLR 1 396 0 9 671 7918 69 29 10 chr4 11340991 11342069 -144288051 + MTA_Mm-int LTR MaLR 1 1098 0 9 671 3525 18 5 0 chr4 11342069 11342461 -144287659 + MTA_Mm LTR MaLR 1 394 -2 9 671 195 42 0 0 chr4 11342712 11342736 -144287384 + (T)n Simple_repeat Simple_repeat 1 24 0 9 671 993 120 21 0 chr4 11342795 11342937 -144287183 - B1_Mus2 SINE Alu 0 147 3 9 671 4720 168 42 2 chr4 11342937 11343805 -144286315 - RMER19B LTR ERVK 0 902 1 9 671 1625 116 93 61 chr4 11343959 11344271 -144285849 - RLTRETN_Mm LTR ERVK 0 322 1 9 671 1105 68 0 0 chr4 11344354 11344500 -144285620 - B2_Mm2 SINE B2 -48 147 2 9 671 220 177 0 46 chr4 11344787 11344852 -144285268 + CT-rich Low_complexity Low_complexity 5 66 0 9 671 567 195 138 0 chr4 11344856 11344979 -144285141 - B1_Mur2 SINE Alu -9 140 1 9 671 513 315 27 0 chr4 11345061 11345210 -144284910 - RSINE1 SINE B4 -9 156 4 9 671 421 266 0 0 chr4 11345213 11345326 -144284794 - PB1D9 SINE Alu 0 120 8 9 671 244 316 183 9 chr4 11345928 11346043 -144284077 - ID_B1 SINE B4 -8 216 82 9 671 380 273 101 8 chr4 11346153 11346282 -144283838 - B1F SINE Alu -8 141 1 9 671 218 0 94 0 chr4 11346917 11346949 -144283171 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 671 753 135 0 0 chr4 11347338 11347464 -144282656 + (TCC)n Simple_repeat Simple_repeat 2 127 0 9 671 903 248 128 26 chr4 11348117 11348461 -144281659 + MTEb LTR MaLR 1 379 0 9 671 529 219 118 6 chr4 11348528 11348689 -144281431 - B3 SINE B2 0 216 38 9 671 387 0 0 0 chr4 11348694 11348737 -144281383 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 671 1087 42 0 0 chr4 11348737 11348879 -144281241 - B1_Mm SINE Alu 0 147 6 9 671 508 273 15 8 chr4 11349115 11349248 -144280872 + ID_B1 SINE B4 91 224 0 9 671 346 188 29 0 chr4 11349282 11349351 -144280769 - PB1D9 SINE Alu 0 120 50 9 671 526 264 33 0 chr4 11349425 11349546 -144280574 + RSINE1 SINE B4 6 130 -35 9 671 1154 62 0 7 chr4 11349551 11349697 -144280423 + B1_Mm SINE Alu 2 146 -1 9 671 341 299 22 59 chr4 11349768 11349903 -144280217 + ID_B1 SINE B4 78 207 -17 9 671 630 202 39 8 chr4 11349788 11349918 -144280202 + B1F2 SINE Alu 16 149 0 9 671 1551 300 117 25 chr4 11349936 11351114 -144279006 + Lx8 LINE L1 6186 7471 -2 9 671 1317 61 66 0 chr4 11351156 11351337 -144278783 + B2_Mm1a SINE B2 1 193 0 9 671 810 248 19 60 chr4 11351756 11351833 -144278287 - B3 SINE B2 -10 206 140 9 671 974 101 65 0 chr4 11351833 11351972 -144278148 + B1_Mus1 SINE Alu 1 148 0 9 671 810 248 19 60 chr4 11351972 11352109 -144278011 - B3 SINE B2 -77 139 1 9 671 904 107 8 0 chr4 11352149 11352280 -144277840 - B1_Mur4 SINE Alu -15 135 4 9 671 225 0 0 0 chr4 11352764 11352789 -144277331 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 671 317 244 47 0 chr4 11352817 11352903 -144277217 - RMER15 LTR ERVL -3 572 483 9 671 210 329 96 0 chr4 11353023 11353096 -144277024 + ID4_ SINE ID 1 80 -3 9 671 465 248 144 23 chr4 11353257 11353389 -144276731 - B1F SINE Alu -1 148 1 9 671 453 286 116 35 chr4 11353389 11353402 -144276718 - ID_B1 SINE B4 -1 223 64 9 671 441 0 0 0 chr4 11353402 11353451 -144276669 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 671 453 286 116 35 chr4 11353451 11353504 -144276616 - ID SINE ID -161 63 9 9 671 379 191 22 2 chr4 11353522 11353612 -144276508 + B1F SINE Alu 26 125 -2 1 671 1107 88 6 0 chr4 11353716 11353875 -144276245 + B2_Mm1a SINE B2 1 160 -33 1 671 540 0 0 0 chr4 11353875 11353935 -144276185 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 671 753 275 67 39 chr4 11353981 11354265 -144275855 + B4 SINE B4 1 292 0 1 671 569 169 0 16 chr4 11354265 11354511 -144275609 + (CA)n Simple_repeat Simple_repeat 1 242 0 1 671 1151 74 0 0 chr4 11354532 11354680 -144275440 - B1_Mus1 SINE Alu 0 148 1 1 671 416 129 0 34 chr4 11354689 11354777 -144275343 + T-rich Low_complexity Low_complexity 1 85 0 1 671 324 0 0 0 chr4 11355592 11355628 -144274492 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 671 377 306 100 20 chr4 11355633 11355902 -144274218 - B4A SINE B4 -11 281 2 1 671 373 246 15 73 chr4 11355910 11356046 -144274074 + L1MB4 LINE L1 5747 5874 -306 1 671 327 220 135 45 chr4 11356049 11356182 -144273938 + B1_Mur2 SINE Alu 5 149 0 1 671 1040 62 7 46 chr4 11356192 11356345 -144273775 + B1_Mus1 SINE Alu 1 147 -1 1 671 212 116 47 0 chr4 11356345 11356388 -144273732 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 1 671 536 268 56 0 chr4 11356401 11356543 -144273577 + RSINE1 SINE B4 16 165 0 1 671 369 0 0 0 chr4 11356546 11356587 -144273533 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 671 445 279 78 0 chr4 11356606 11356735 -144273385 + B1_Mur1 SINE Alu 1 139 -10 1 671 189 0 0 0 chr4 11356735 11356756 -144273364 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 671 287 237 153 48 chr4 11356775 11356899 -144273221 + L1MB4 LINE L1 5878 6014 -157 1 671 841 134 0 80 chr4 11357026 11357188 -144272932 + B1_Mur3 SINE Alu 1 149 0 1 671 2476 163 134 2 chr4 11357443 11357904 -144272216 + RLTR12B LTR ERVK 3 524 -4 1 671 387 182 41 72 chr4 11357908 11358103 -144272017 + RMER17C LTR ERVK 86 274 -136 1 671 222 235 0 0 chr4 11358352 11358403 -144271717 + T-rich Low_complexity Low_complexity 1 51 0 1 671 392 165 127 0 chr4 11358703 11358782 -144271338 - B1_Mus1 SINE Alu -23 125 37 1 671 1954 167 0 3 chr4 11358821 11359133 -144270987 - RLTR10E LTR ERVK 0 311 1 1 671 11571 128 5 6 chr4 11359208 11360983 -144269137 - MMERVK10C-int LTR ERVK -258 7422 5622 1 671 1319 17 16 48 chr4 11360983 11361170 -144268950 + B2_Mm1a SINE B2 13 193 0 1 671 38967 114 4 7 chr4 11361171 11365865 -144264255 - MMERVK10C-int LTR ERVK -1955 5626 940 1 671 2881 33 0 94 chr4 11365865 11366268 -144263852 + RLTR10B2 LTR ERVK 1 365 0 1 671 38967 114 4 7 chr4 11366268 11366947 -144263173 - MMERVK10C-int LTR ERVK -6642 939 267 1 671 352 141 51 13 chr4 11366949 11367028 -144263092 - MMERVK10C-int LTR ERVK -7499 82 1 1 671 1716 170 36 10 chr4 11367028 11367331 -144262789 - RLTR10E LTR ERVK 0 311 1 1 671 1017 224 38 38 chr4 11367522 11367865 -144262255 + RLTR15 LTR ERVK 1 343 -16 1 671 856 95 0 0 chr4 11368382 11368508 -144261612 - B1_Mus1 SINE Alu -21 127 2 1 671 8158 53 3 2 chr4 11368601 11370158 -144259962 - L1Md_F2 LINE L1 -1 6581 5023 1 671 1211 41 0 13 chr4 11370182 11370193 -144259927 - B1_Mus1 SINE Alu 0 148 139 1 671 1343 57 6 0 chr4 11370193 11370370 -144259750 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1 671 1211 41 0 13 chr4 11370370 11370507 -144259613 - B1_Mus1 SINE Alu -10 138 2 1 671 3260 252 57 85 chr4 11370810 11372121 -144257999 + MYSERV-int LTR ERVK 3772 5047 -1503 1 671 1116 69 7 0 chr4 11372121 11372265 -144257855 + B1_Mus2 SINE Alu 3 147 0 1 671 1616 210 34 53 chr4 11372305 11372722 -144257398 + MYSERV-int LTR ERVK 5030 5438 -1112 1 671 2338 173 27 79 chr4 11372723 11373270 -144256850 + MYSERV6-int LTR ERVK 8441 8959 0 1 671 830 237 38 44 chr4 11373270 11373610 -144256510 + RLTR15 LTR ERVK 1 338 -21 1 671 1280 206 77 0 chr4 11373800 11374086 -144256034 - RLTR28 LTR ERVL 0 524 217 1 671 261 149 0 43 chr4 11374440 11374510 -144255610 + CT-rich Low_complexity Low_complexity 1 67 0 1 671 620 145 202 0 chr4 11374514 11374638 -144255482 - B1_Mur4 SINE Alu -1 149 1 1 671 266 208 77 13 chr4 11374668 11374746 -144255374 - B3 SINE B2 -4 212 130 1 671 1089 193 27 5 chr4 11374830 11375054 -144255066 - RMER15 LTR ERVL -2 573 345 1 671 918 173 28 0 chr4 11375025 11375204 -144254916 - RMER15 LTR ERVL -391 184 1 1 671 401 302 17 25 chr4 11375354 11375473 -144254647 - PB1 SINE Alu -9 118 1 1 671 383 244 169 7 chr4 11375503 11375639 -144254481 + ID_B1 SINE B4 6 163 -61 1 671 357 252 15 75 chr4 11375730 11375863 -144254257 + Charlie12 DNA MER1_type 7 131 -2742 1 671 311 260 13 2 chr4 11375883 11375969 -144254151 - L1MD3 LINE L1 -72 7923 7846 1 671 1115 69 120 11 chr4 11375971 11376146 -144253974 + B2_Mm2 SINE B2 2 195 0 1 671 2533 155 72 28 chr4 11376224 11376723 -144253397 + RLTR28 LTR ERVL 4 524 0 1 671 645 273 22 34 chr4 11376971 11377149 -144252971 + B3A SINE B2 2 177 -21 1 671 731 217 0 20 chr4 11377218 11377364 -144252756 - B1_Mur4 SINE Alu -5 145 3 1 671 202 256 32 40 chr4 11377364 11377490 -144252630 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1 671 1629 42 0 0 chr4 11377769 11377959 -144252161 + B2_Mm1a SINE B2 2 191 -2 1 671 359 299 19 89 chr4 11377986 11378144 -144251976 + RSINE1 SINE B4 3 149 -16 1 671 329 308 58 0 chr4 11378243 11378347 -144251773 - B1F SINE Alu 0 149 40 1 671 362 292 18 9 chr4 11378370 11378484 -144251636 - PB1D10 SINE Alu -2 115 1 1 671 1172 103 58 21 chr4 11378506 11378694 -144251426 - B2_Mm2 SINE B2 0 195 1 1 671 1807 137 9 26 chr4 11378825 11379159 -144250961 - MTC LTR MaLR 0 421 67 1 671 195 100 0 0 chr4 11379391 11379421 -144250699 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1 671 328 250 90 49 chr4 11379723 11379845 -144250275 + ID_B1 SINE B4 78 204 -20 1 671 660 176 0 53 chr4 11380629 11380779 -144249341 + B1_Mus1 SINE Alu 7 148 0 1 671 494 198 17 0 chr4 11380779 11380895 -144249225 + GA-rich Low_complexity Low_complexity 3 120 0 1 671 296 0 51 0 chr4 11381014 11381053 -144249067 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 671 488 283 6 0 chr4 11381302 11381475 -144248645 + CT-rich Low_complexity Low_complexity 3 176 0 1 671 491 196 10 10 chr4 11381771 11381874 -144248246 - PB1D10 SINE Alu -1 116 14 1 671 34 24 0 0 chr4 11381891 11381932 -144248188 + AT_rich Low_complexity Low_complexity 1 41 0 1 671 552 300 108 61 chr4 11381949 11382226 -144247894 - MTEa LTR MaLR -45 334 45 1 671 450 252 9 0 chr4 11382855 11382966 -144247154 - MLT1A0 LTR MaLR -5 360 249 1 671 451 238 286 24 chr4 11383115 11383283 -144246837 + B3 SINE B2 4 215 -1 1 671 823 147 46 88 chr4 11383283 11383499 -144246621 + Lx9 LINE L1 7437 7643 -1 1 671 27 29 0 0 chr4 11383500 11383534 -144246586 + AT_rich Low_complexity Low_complexity 1 34 0 1 671 225 196 0 0 chr4 11383576 11383622 -144246498 + T-rich Low_complexity Low_complexity 1 46 0 1 671 257 118 0 56 chr4 11383622 11383676 -144246444 - B1_Mur4 SINE Alu 0 150 100 1 671 318 50 0 0 chr4 11383677 11383717 -144246403 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 671 846 121 33 13 chr4 11383718 11383882 -144246238 - B2_Mm2 SINE B2 -26 167 3 1 671 1041 73 179 24 chr4 11384106 11384134 -144245986 - B2_Mm2 SINE B2 0 195 168 1 671 1160 57 7 0 chr4 11384134 11384275 -144245845 + B1_Mm SINE Alu 1 142 -5 1 671 345 47 0 0 chr4 11384282 11384325 -144245795 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 671 1041 73 179 24 chr4 11384325 11384456 -144245664 - B2_Mm2 SINE B2 -58 137 5 1 671 745 269 43 24 chr4 11384469 11384724 -144245396 - RLTR11A2 LTR ERVK -267 260 1 1 671 1981 181 72 29 chr4 11385047 11385420 -144244700 + RLTR16 LTR ERVK 1 403 -102 1 671 1382 51 0 71 chr4 11385420 11385630 -144244490 + B2_Mm2 SINE B2 1 195 0 1 671 1981 181 72 29 chr4 11385630 11385740 -144244380 + RLTR16 LTR ERVK 404 505 0 1 671 3199 175 98 21 chr4 11385768 11386604 -144243516 + L1_Mur3 LINE L1 310 1234 -6494 1 671 1149 109 60 0 chr4 11386605 11386789 -144243331 + B2_Mm2 SINE B2 1 195 0 1 671 987 72 22 0 chr4 11386823 11386961 -144243159 + B1_Mm SINE Alu 7 147 0 1 671 3739 158 44 34 chr4 11386989 11387690 -144242430 + L1_Mur3 LINE L1 2003 2723 -3157 1 671 853 147 31 0 chr4 11387690 11387819 -144242301 + B1_Mur4 SINE Alu 5 137 -13 1 671 215 61 30 0 chr4 11387822 11387855 -144242265 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 671 3739 158 44 34 chr4 11387855 11387968 -144242152 + L1_Mur3 LINE L1 2724 2829 -3051 1 671 3574 151 75 28 chr4 11387972 11388694 -144241426 - RMER6A LTR ERVK 0 756 1 1 671 2593 159 37 69 chr4 11388703 11388853 -144241267 + L1_Mur3 LINE L1 2874 3021 -2859 1 671 1156 75 7 0 chr4 11388853 11389000 -144241120 - B1_Mus1 SINE Alu 0 148 1 1 671 2593 159 37 69 chr4 11389000 11389253 -144240867 + L1_Mur3 LINE L1 3022 3266 -2614 1 671 1360 87 27 0 chr4 11389253 11389438 -144240682 + B2_Mm2 SINE B2 2 191 -4 1 671 2593 159 37 69 chr4 11389438 11389653 -144240467 + L1_Mur3 LINE L1 3267 3473 -2407 1 671 2140 132 83 8 chr4 11389690 11390063 -144240057 - RLTR9D LTR ERVK -2 401 1 1 671 418 84 40 40 chr4 11390064 11390138 -144239982 - ETnERV2-int LTR ERVK -2 7404 7331 1 671 4102 172 16 11 chr4 11390352 11391213 -144238907 - ETnERV2-int LTR ERVK -983 6423 5610 1 671 1605 150 54 63 chr4 11391215 11391266 -144238854 + L1_Mur3 LINE L1 3917 3954 -1926 1 671 3381 28 0 10 chr4 11391266 11391666 -144238454 + L1Md_T LINE L1 6187 6582 0 1 671 1605 150 54 63 chr4 11391666 11391949 -144238171 + L1_Mur3 LINE L1 3955 4248 -1632 1 671 252 0 0 0 chr4 11391964 11391992 -144238128 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1 671 247 86 0 0 chr4 11391994 11392029 -144238091 + B1_Mur4 SINE Alu 1 35 -115 1 671 506 237 39 35 chr4 11392164 11392408 -144237712 + LTRIS_Mm LTR ERV1 238 503 -125 1 671 871 43 17 0 chr4 11392408 11392523 -144237597 + B1_Mm SINE Alu 31 147 0 1 671 216 226 32 0 chr4 11392524 11392586 -144237534 + A-rich Low_complexity Low_complexity 1 64 0 1 671 524 133 44 0 chr4 11392591 11392681 -144237439 + Lx7 LINE L1 4256 4349 -1531 1 671 2801 172 62 0 chr4 11392675 11393244 -144236876 + Lx7 LINE L1 4804 5407 -473 1 671 1222 61 0 0 chr4 11393244 11393392 -144236728 + B1_Mus1 SINE Alu 1 148 0 1 671 432 212 0 45 chr4 11393414 11393503 -144236617 - RMER20B LTR ERVK 0 627 543 1 671 1706 154 96 6 chr4 11393526 11393871 -144236249 - RMER20B LTR ERVK -251 376 1 1 671 1201 62 0 0 chr4 11393887 11394033 -144236087 - B1_Mus2 SINE Alu -1 146 1 1 671 3798 220 38 62 chr4 11394079 11395034 -144235086 + Lx7 LINE L1 5867 6798 -898 1 671 1350 203 94 52 chr4 11395034 11395440 -144234680 - RMER10A LTR ERVL 0 442 20 1 671 2169 195 113 11 chr4 11395466 11395525 -144234595 + Lx6 LINE L1 6788 6852 -608 1 671 224 0 106 21 chr4 11395525 11395572 -144234548 + (TGGG)n Simple_repeat Simple_repeat 1 51 0 1 671 2169 165 150 15 chr4 11395572 11396083 -144234037 + Lx6 LINE L1 6853 7696 0 1 671 3881 188 46 12 chr4 11396295 11397084 -144233036 + RMER1B Other Other 156 1065 -1 1 671 213 39 0 0 chr4 11397649 11397675 -144232445 + (T)n Simple_repeat Simple_repeat 1 26 0 1 671 1194 55 7 0 chr4 11397675 11397821 -144232299 - B1_Mus2 SINE Alu 0 147 1 1 671 771 236 39 39 chr4 11398175 11398382 -144231738 - ORR1D2 LTR MaLR 0 370 164 1 671 211 333 83 0 chr4 11398433 11398517 -144231603 - RSINE1 SINE B4 -3 162 72 1 671 339 277 87 74 chr4 11398790 11399020 -144231100 - MT2A LTR ERVL -8 525 293 1 671 420 97 0 0 chr4 11399267 11399329 -144230791 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 671 456 255 0 0 chr4 11399329 11399427 -144230693 - RSINE1 SINE B4 -25 140 43 1 671 207 0 0 0 chr4 11399437 11399460 -144230660 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 671 944 47 102 0 chr4 11399464 11399591 -144230529 - B1_Mus1 SINE Alu -7 141 2 1 671 423 226 29 19 chr4 11399760 11399864 -144230256 + PB1D10 SINE Alu 6 110 -7 1 671 631 296 35 0 chr4 11399892 11400064 -144230056 + B3 SINE B2 9 186 -30 1 671 1616 143 13 42 chr4 11400069 11400375 -144229745 + RLTR28 LTR ERVL 6 302 -222 1 671 2497 64 50 0 chr4 11400391 11400750 -144229370 - MTB LTR MaLR -23 377 1 1 671 257 206 156 42 chr4 11400847 11400943 -144229177 + MuRRS4-int LTR ERV1 3567 3673 -1390 1 671 281 308 0 0 chr4 11400995 11401073 -144229047 + RLTR14-int LTR ERV1 3307 3384 -1933 1 671 225 132 0 0 chr4 11402754 11402792 -144227328 + (TCTCCC)n Simple_repeat Simple_repeat 6 43 0 1 671 252 346 9 38 chr4 11403049 11403154 -144226966 + RLTR4_MM-int LTR ERV1 7157 7258 -343 1 672 571 217 43 7 chr4 11403713 11403852 -144226268 - B1F SINE Alu -1 148 5 1 672 850 65 0 8 chr4 11403935 11404048 -144226072 + B1_Mur4 SINE Alu 29 141 -9 1 672 203 32 65 0 chr4 11404048 11404079 -144226041 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 672 603 102 0 0 chr4 11404392 11404480 -144225640 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 1 672 1085 111 0 12 chr4 11404481 11404493 -144225627 - B2_Mm2 SINE B2 -23 172 162 1 672 189 0 0 0 chr4 11404493 11404514 -144225606 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 672 1085 111 0 12 chr4 11404514 11404674 -144225446 - B2_Mm2 SINE B2 -34 161 2 1 672 2435 138 50 2 chr4 11404717 11405117 -144225003 + MTC LTR MaLR 1 419 -2 1 672 579 328 5 20 chr4 11405214 11405413 -144224707 - B4 SINE B4 -13 279 84 1 672 35 0 0 22 chr4 11405413 11405429 -144224691 + AT_rich Low_complexity Low_complexity 1 16 0 1 672 1268 27 0 0 chr4 11405429 11405576 -144224544 + B1_Mm SINE Alu 1 147 0 1 672 35 0 0 22 chr4 11405576 11405605 -144224515 + AT_rich Low_complexity Low_complexity 1 29 0 1 672 263 258 75 15 chr4 11405635 11405702 -144224418 - ID4_ SINE ID -2 81 11 1 672 618 286 43 5 chr4 11405719 11405926 -144224194 - B3 SINE B2 -1 215 1 1 672 230 250 15 59 chr4 11405926 11405994 -144224126 - B4 SINE B4 -196 96 32 1 672 1129 103 38 0 chr4 11406509 11406693 -144223427 + ORR1A2 LTR MaLR 137 327 0 1 672 590 195 17 26 chr4 11407009 11407125 -144222995 - B1_Mus1 SINE Alu -33 115 1 1 672 236 140 35 0 chr4 11407165 11407222 -144222898 - B1_Mm SINE Alu 0 147 89 1 672 384 308 33 25 chr4 11407348 11407468 -144222652 - U3 snRNA snRNA -7 210 90 1 672 458 298 75 0 chr4 11407644 11407805 -144222315 + ID_B1 SINE B4 52 224 0 1 672 987 93 0 0 chr4 11407805 11407945 -144222175 + (GAA)n Simple_repeat Simple_repeat 2 141 0 1 672 1138 76 0 7 chr4 11408126 11408271 -144221849 - B1_Mus1 SINE Alu -2 146 3 1 672 369 64 333 9 chr4 11408475 11408583 -144221537 - B2_Mm2 SINE B2 -6 189 47 1 672 1121 112 59 0 chr4 11408668 11408838 -144221282 - B2_Mm2 SINE B2 -14 181 2 1 672 192 185 0 0 chr4 11409223 11409277 -144220843 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 1 672 330 215 0 0 chr4 11409277 11409356 -144220764 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 672 301 326 51 58 chr4 11409358 11409514 -144220606 - RSINE1 SINE B4 0 165 11 1 672 880 246 189 4 chr4 11409514 11409779 -144220341 - MTEb LTR MaLR -57 322 9 1 672 465 241 132 44 chr4 11409787 11409907 -144220213 + Tigger7 DNA MER2_type 338 466 -2025 1 672 1732 154 88 41 chr4 11409907 11410272 -144219848 + ORR1C2 LTR MaLR 3 384 0 1 672 465 241 132 44 chr4 11410272 11410355 -144219765 + Tigger7 DNA MER2_type 467 559 -1932 1 672 757 75 0 0 chr4 11410375 11410481 -144219639 + B2_Mm2 SINE B2 2 107 -88 1 672 545 251 233 4 chr4 11410793 11411029 -144219091 + L1MC2 LINE L1 5403 5692 -652 1 672 520 204 92 0 chr4 11411162 11411314 -144218806 + L1MC2 LINE L1 6155 6320 -24 1 672 248 330 88 0 chr4 11411315 11411406 -144218714 + PB1D10 SINE Alu 14 112 -5 1 672 269 282 51 0 chr4 11411410 11411488 -144218632 + ID4 SINE ID 2 83 0 1 672 1629 47 0 0 chr4 11411758 11411951 -144218169 - B2_Mm1a SINE B2 0 193 1 1 672 241 206 32 62 chr4 11412374 11412462 -144217658 - B1F SINE Alu -2 147 27 1 672 260 156 0 0 chr4 11412672 11412717 -144217403 - ID_B1 SINE B4 -6 218 174 1 672 210 155 241 0 chr4 11412717 11412730 -144217390 - B1F SINE Alu -6 143 72 1 672 1339 61 78 0 chr4 11414095 11414275 -144215845 - B2_Mm2 SINE B2 0 195 2 1 672 691 214 28 14 chr4 11414581 11414723 -144215397 + B1_Mur2 SINE Alu 1 144 -5 1 672 864 91 7 29 chr4 11415069 11415205 -144214915 + B1_Mur4 SINE Alu 18 150 0 1 672 406 250 25 41 chr4 11415265 11415386 -144214734 - B1_Mm SINE Alu 0 120 2 1 672 357 318 31 0 chr4 11416108 11416237 -144213883 + RSINE1 SINE B4 9 141 -24 1 672 597 217 145 67 chr4 11416532 11416725 -144213395 + B3 SINE B2 3 210 -6 1 672 616 202 40 0 chr4 11416772 11416896 -144213224 + B3A SINE B2 1 129 -69 1 672 688 264 0 35 chr4 11417087 11417256 -144212864 + B3A SINE B2 2 164 -34 1 672 451 254 45 52 chr4 11417294 11417448 -144212672 + RSINE1 SINE B4 12 164 -1 1 672 406 333 7 7 chr4 11417706 11417848 -144212272 + ID_B1 SINE B4 82 223 -1 1 672 1051 168 102 10 chr4 11418497 11418702 -144211418 - URR1B DNA MER1_type -1 224 1 1 672 191 0 103 0 chr4 11418958 11418987 -144211133 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 1 672 249 177 43 114 chr4 11418987 11419057 -144211063 - PB1D10 SINE Alu 0 117 53 1 672 213 328 0 29 chr4 11419070 11419139 -144210981 - ID SINE ID -156 68 2 1 672 182 273 110 20 chr4 11419315 11419461 -144210659 - L2b LINE L2 -221 3154 2996 1 672 210 280 27 0 chr4 11419797 11419872 -144210248 - L2b LINE L2 -937 2482 2406 1 672 378 291 0 0 chr4 11420135 11420221 -144209899 - B1F2 SINE Alu -5 144 59 1 672 633 226 44 0 chr4 11420296 11420433 -144209687 + ID_B1 SINE B4 19 161 -63 1 672 217 346 74 0 chr4 11420361 11420442 -144209678 + PB1D7 SINE Alu 6 92 -28 1 672 195 42 0 0 chr4 11420447 11420471 -144209649 + (T)n Simple_repeat Simple_repeat 1 24 0 1 672 999 63 209 0 chr4 11420511 11420669 -144209451 + B2_Mm2 SINE B2 1 191 -4 1 672 293 314 194 55 chr4 11421248 11421413 -144208707 - B3 SINE B2 -28 188 1 1 672 852 166 7 14 chr4 11421581 11421728 -144208392 - B1_Mur3 SINE Alu 0 149 4 1 672 577 250 50 7 chr4 11422495 11422636 -144207484 + ID_B1 SINE B4 14 160 -64 1 672 212 273 51 25 chr4 11422574 11422653 -144207467 + B1_Mur4 SINE Alu 18 98 -52 1 672 275 283 142 0 chr4 11422688 11422794 -144207326 + ID_B1 SINE B4 81 201 -23 1 672 210 293 155 39 chr4 11422703 11422806 -144207314 + B1F1 SINE Alu 17 131 -18 1 672 2004 196 10 100 chr4 11422839 11423430 -144206690 - RLTR31_Mur LTR ERVK -4 549 12 1 672 756 289 52 28 chr4 11423434 11423683 -144206437 + B4A SINE B4 13 267 -25 1 672 508 330 126 36 chr4 11423715 11424079 -144206041 - MLT1F LTR MaLR -151 397 1 1 672 432 245 44 70 chr4 11424294 11424452 -144205668 - RSINE1 SINE B4 -2 163 10 1 672 448 118 53 21 chr4 11424490 11424585 -144205535 - B1_Mur3 SINE Alu 0 149 52 1 672 273 154 263 42 chr4 11424747 11424842 -144205278 - B1_Mus2 SINE Alu -7 140 25 1 672 246 105 0 0 chr4 11424879 11424917 -144205203 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 672 563 158 145 26 chr4 11424920 11425037 -144205083 - B1_Mus1 SINE Alu -13 135 5 1 672 360 0 0 0 chr4 11425086 11425126 -144204994 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 672 726 254 41 0 chr4 11425130 11425299 -144204821 - B3A SINE B2 -22 176 1 1 672 309 280 30 105 chr4 11425301 11425434 -144204686 - B1F SINE Alu 0 117 1 1 672 270 0 0 0 chr4 11425455 11425485 -144204635 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 1 672 291 385 24 18 chr4 11425511 11425675 -144204445 - RSINE1 SINE B4 0 165 1 1 672 1124 73 0 0 chr4 11426274 11426410 -144203710 + B1_Mus2 SINE Alu 2 137 -10 1 672 772 74 0 0 chr4 11426709 11426817 -144203303 - B1_Mus2 SINE Alu 0 147 40 1 672 365 73 36 0 chr4 11426879 11426934 -144203186 - PB1D9 SINE Alu -61 59 3 1 672 328 274 14 0 chr4 11426985 11427058 -144203062 - ID4_ SINE ID -9 74 1 1 672 186 337 10 31 chr4 11427112 11427210 -144202910 + MER5B DNA MER1_type 3 98 -80 1 672 2871 105 22 5 chr4 11427250 11427660 -144202460 + L1Md_F2 LINE L1 6166 6582 0 1 672 372 291 19 37 chr4 11428283 11428390 -144201730 - RSINE1 SINE B4 -57 108 4 1 672 978 185 22 0 chr4 11428727 11428905 -144201215 + B3 SINE B2 1 182 -34 1 672 568 233 41 8 chr4 11429047 11429168 -144200952 - B3A SINE B2 -73 125 1 1 672 1254 87 6 17 chr4 11429177 11429353 -144200767 - B2_Mm2 SINE B2 -19 176 3 1 672 363 44 0 0 chr4 11429591 11429636 -144200484 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 672 753 255 10 35 chr4 11429680 11429883 -144200237 + B3A SINE B2 1 198 0 1 672 415 268 90 53 chr4 11429905 11429920 -144200200 - B3A SINE B2 -1 197 184 1 672 248 70 0 23 chr4 11429920 11429964 -144200156 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 672 415 268 90 53 chr4 11429964 11430137 -144199983 - B3A SINE B2 -15 183 3 1 672 360 265 0 39 chr4 11430139 11430241 -144199879 - ID_B1 SINE B4 0 224 127 1 672 23 86 0 0 chr4 11430452 11430510 -144199610 + AT_rich Low_complexity Low_complexity 1 58 0 1 672 443 204 23 1 chr4 11430655 11430751 -144199369 - B1_Mur2 SINE Alu -4 116 20 1 672 259 290 36 36 chr4 11430664 11430775 -144199345 - ID_B1 SINE B4 -38 186 76 1 672 229 218 0 68 chr4 11430893 11430952 -144199168 - B1F1 SINE Alu -94 55 1 1 672 485 196 10 43 chr4 11431148 11431263 -144198857 + B1_Mur4 SINE Alu 9 149 -1 1 672 672 124 8 50 chr4 11431285 11431404 -144198716 + B1_Mus1 SINE Alu 28 141 -7 1 672 180 0 0 0 chr4 11431438 11431458 -144198662 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 672 27 0 0 0 chr4 11431891 11431918 -144198202 + AT_rich Low_complexity Low_complexity 1 27 0 1 672 620 151 0 0 chr4 11431936 11432042 -144198078 + B1_Mur3 SINE Alu 44 149 0 1 672 814 237 35 30 chr4 11432058 11432258 -144197862 - B3 SINE B2 -15 201 1 1 672 22 0 0 0 chr4 11432260 11432282 -144197838 + AT_rich Low_complexity Low_complexity 1 22 0 1 672 561 298 24 43 chr4 11432284 11432491 -144197629 - B3 SINE B2 -13 203 1 1 672 371 282 97 0 chr4 11432968 11433071 -144197049 - PB1D9 SINE Alu -7 113 1 1 672 219 36 0 0 chr4 11433114 11433142 -144196978 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 1 672 21 36 0 0 chr4 11433317 11433345 -144196775 + AT_rich Low_complexity Low_complexity 1 28 0 1 672 254 208 39 7 chr4 11433507 11433662 -144196458 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 672 352 258 69 15 chr4 11433761 11433891 -144196229 - L1MD LINE L1 -576 5783 5647 1 672 761 179 52 0 chr4 11434287 11434421 -144195699 - B1_Mus2 SINE Alu -6 141 1 1 672 536 311 0 0 chr4 11434762 11434894 -144195226 - ID_B1 SINE B4 -2 222 91 1 672 320 263 0 0 chr4 11435151 11435246 -144194874 + GA-rich Low_complexity Low_complexity 1 95 0 1 672 204 163 0 0 chr4 11435277 11435320 -144194800 + GA-rich Low_complexity Low_complexity 1 43 0 1 672 216 0 0 0 chr4 11435806 11435830 -144194290 + (T)n Simple_repeat Simple_repeat 1 24 0 1 672 3318 188 62 45 chr4 11436434 11437170 -144192950 - Lx5 LINE L1 -3 7047 6299 1 672 872 43 0 0 chr4 11437304 11437419 -144192701 - B1_Mus2 SINE Alu -31 116 2 1 672 697 193 26 65 chr4 11437426 11437581 -144192539 - B1_Mur3 SINE Alu 0 149 1 1 672 487 241 69 0 chr4 11437587 11437732 -144192388 - B3A SINE B2 0 198 44 1 672 1188 41 7 0 chr4 11437870 11438015 -144192105 + B1_Mus2 SINE Alu 2 147 0 1 672 212 227 62 62 chr4 11438200 11438280 -144191840 - B4 SINE B4 -212 80 1 1 672 709 283 22 78 chr4 11438295 11438352 -144191768 - B4A SINE B4 -2 290 238 1 672 1357 80 21 11 chr4 11438352 11438541 -144191579 - B2_Mm2 SINE B2 -4 191 1 1 672 709 283 22 78 chr4 11438541 11438751 -144191369 - B4A SINE B4 -55 237 38 1 672 367 214 22 22 chr4 11438780 11438871 -144191249 - B4A SINE B4 -201 91 1 1 672 779 220 52 57 chr4 11438897 11439109 -144191011 - B3 SINE B2 -5 211 1 1 672 286 212 88 0 chr4 11439123 11439203 -144190917 - B1F SINE Alu -62 87 1 1 672 574 224 26 0 chr4 11439283 11439399 -144190721 + PB1D9 SINE Alu 1 119 -1 1 672 568 263 15 0 chr4 11439444 11439577 -144190543 + RSINE1 SINE B4 13 147 -18 1 672 588 279 36 16 chr4 11439625 11439818 -144190302 + B3A SINE B2 1 197 -1 1 672 589 214 178 74 chr4 11441911 11442113 -144188007 + ID_B1 SINE B4 1 223 -1 1 672 559 241 14 28 chr4 11442306 11442451 -144187669 + B1_Mur1 SINE Alu 2 144 -5 1 672 692 307 44 5 chr4 11443528 11443734 -144186386 - MER68 LTR ERVL -341 222 9 1 672 1070 218 34 0 chr4 11443927 11444133 -144185987 + B3 SINE B2 1 213 -3 1 672 1563 74 5 0 chr4 11444292 11444482 -144185638 + B2_Mm1t SINE B2 2 192 -1 1 672 379 319 88 15 chr4 11444606 11444623 -144185497 + ID_B1 SINE B4 63 209 -15 1 672 460 267 117 0 chr4 11444623 11444743 -144185377 + B1F SINE Alu 1 134 -15 1 672 1369 88 6 0 chr4 11444752 11444923 -144185197 - B2_Mm1t SINE B2 -18 175 4 1 672 540 267 10 82 chr4 11445040 11445236 -144184884 + B3A SINE B2 1 182 -16 1 672 22 35 0 0 chr4 11445241 11445270 -144184850 + AT_rich Low_complexity Low_complexity 1 29 0 1 672 381 282 24 0 chr4 11445300 11445385 -144184735 + RSINE1 SINE B4 3 89 -76 1 672 228 184 0 0 chr4 11445395 11445444 -144184676 + CT-rich Low_complexity Low_complexity 1 49 0 1 672 486 228 127 24 chr4 11445470 11445596 -144184524 + B1F SINE Alu 1 139 -10 1 672 251 175 17 34 chr4 11447088 11447147 -144182973 - 5S rRNA rRNA -60 61 4 1 672 709 245 124 65 chr4 11447482 11447536 -144182584 + MER2 DNA MER2_type 55 94 -251 1 672 544 216 0 73 chr4 11447536 11447646 -144182474 + PB1D10 SINE Alu 1 102 -15 1 672 709 245 124 65 chr4 11447646 11447866 -144182254 + MER2 DNA MER2_type 95 345 0 1 672 703 67 11 2 chr4 11447906 11448014 -144182106 + B1_Mus1 SINE Alu 1 117 0 1 672 447 106 0 0 chr4 11448014 11448080 -144182040 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 672 881 256 61 94 chr4 11448492 11448789 -144181331 - B4A SINE B4 0 292 6 1 672 1566 77 0 10 chr4 11449225 11449421 -144180699 - B2_Mm2 SINE B2 -1 194 1 1 672 394 267 20 0 chr4 11450282 11450383 -144179737 - RSINE1 SINE B4 -35 130 28 1 672 237 278 0 53 chr4 11450654 11450730 -144179390 + LTR81C LTR ERV1? 997 1068 -85 1 672 24 32 0 0 chr4 11450842 11450873 -144179247 + AT_rich Low_complexity Low_complexity 1 31 0 1 672 183 80 0 0 chr4 11450990 11451015 -144179105 + (CTTG)n Simple_repeat Simple_repeat 3 27 0 1 672 647 199 0 2 chr4 11451064 11451183 -144178937 - B1_Mur1 SINE Alu -22 127 12 1 672 264 216 0 0 chr4 11451159 11451210 -144178910 + ID_B1 SINE B4 174 224 0 1 672 211 303 30 0 chr4 11451261 11451327 -144178793 + ID_B1 SINE B4 81 148 -76 1 672 305 316 20 0 chr4 11451271 11451369 -144178751 + PB1D10 SINE Alu 10 109 -8 1 672 547 218 206 27 chr4 11451383 11451567 -144178553 + ID_B1 SINE B4 2 218 -6 1 672 1011 55 8 0 chr4 11452067 11452195 -144177925 - B1_Mus2 SINE Alu 0 147 19 1 672 357 266 105 9 chr4 11452349 11452463 -144177657 + PB1 SINE Alu 1 125 -2 1 672 327 25 0 0 chr4 11452643 11452683 -144177437 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 672 1169 75 14 7 chr4 11452687 11452834 -144177286 - B1_Mus1 SINE Alu 0 148 1 1 672 765 192 254 12 chr4 11452886 11453055 -144177065 + B3 SINE B2 4 213 -3 1 672 22 56 0 0 chr4 11453055 11453091 -144177029 + AT_rich Low_complexity Low_complexity 1 36 0 1 672 506 288 4 147 chr4 11453147 11453186 -144176934 - ID_B1 SINE B4 -43 249 168 1 672 643 239 7 40 chr4 11453186 11453334 -144176786 - B1F1 SINE Alu -6 143 1 1 672 506 288 4 147 chr4 11453334 11453390 -144176730 - ID_B1 SINE B4 -43 167 45 1 672 283 224 17 33 chr4 11453386 11453446 -144176674 - tRNA-Ala-GCY_ tRNA tRNA -8 67 9 1 672 300 53 0 0 chr4 11455147 11455185 -144174935 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 672 317 326 80 40 chr4 11455302 11455452 -144174668 - RSINE1 SINE B4 -8 157 2 1 672 400 264 73 0 chr4 11456315 11456425 -144173695 - ID_B1 SINE B4 -20 204 87 1 672 1450 78 39 0 chr4 11456965 11457145 -144172975 - B2_Mm2 SINE B2 -6 189 3 1 672 469 261 149 37 chr4 11457463 11457678 -144172442 - Lx8 LINE L1 -15 7458 7220 1 672 1298 48 0 0 chr4 11458438 11458584 -144171536 + B1_Mm SINE Alu 2 147 0 1 672 354 45 0 0 chr4 11458584 11458628 -144171492 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1 672 446 281 77 18 chr4 11458629 11458799 -144171321 - L1M5 LINE L1 -517 5662 5483 1 672 363 267 22 104 chr4 11458802 11458936 -144171184 - PB1 SINE Alu 0 127 5 1 672 25 0 0 0 chr4 11459571 11459596 -144170524 + AT_rich Low_complexity Low_complexity 1 25 0 1 672 359 250 109 0 chr4 11459659 11459751 -144170369 - PB1D7 SINE Alu -6 114 13 1 672 435 333 0 0 chr4 11460640 11460742 -144169378 + PB1D10 SINE Alu 4 105 -12 1 672 226 219 0 0 chr4 11460983 11461024 -144169096 - B1_Mur1 SINE Alu -8 141 101 1 672 886 216 88 0 chr4 11461028 11461209 -144168911 + URR1A DNA MER1_type 3 199 -27 1 672 217 275 130 0 chr4 11461217 11461286 -144168834 - PB1D7 SINE Alu -41 79 2 1 672 769 174 38 0 chr4 11461714 11461846 -144168274 + B1_Mus1 SINE Alu 10 146 -2 1 672 918 175 209 0 chr4 11462090 11462267 -144167853 + B3 SINE B2 3 216 0 1 672 324 0 0 0 chr4 11462393 11462429 -144167691 + (T)n Simple_repeat Simple_repeat 1 36 0 1 672 511 231 45 36 chr4 11462488 11462600 -144167520 + B1F2 SINE Alu 10 122 -27 1 672 588 239 178 33 chr4 11462604 11462931 -144167189 - L1M4b LINE L1 -2188 4818 4442 1 672 299 25 25 0 chr4 11462931 11462971 -144167149 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 672 691 193 30 0 chr4 11462977 11463112 -144167008 - B1_Mur4 SINE Alu -9 141 3 1 672 588 239 178 33 chr4 11463112 11463171 -144166949 - L1M4b LINE L1 -2569 4437 4369 1 672 304 271 31 0 chr4 11463189 11463285 -144166835 - U6 snRNA snRNA -6 101 3 1 672 242 214 71 0 chr4 11463511 11463567 -144166553 - ID4 SINE ID -5 78 19 1 672 532 339 125 12 chr4 11463640 11463888 -144166232 + Tigger7 DNA MER2_type 17 292 -2199 1 672 322 254 103 0 chr4 11463888 11464014 -144166106 - L1M4b LINE L1 -5297 2037 1899 1 672 1536 58 16 26 chr4 11464038 11464232 -144165888 + B2_Mm2 SINE B2 1 192 -3 1 672 281 256 98 0 chr4 11464237 11464319 -144165801 - RSINE1 SINE B4 -36 129 40 1 672 392 197 0 53 chr4 11464453 11464528 -144165592 - ID4 SINE ID -11 72 2 1 672 267 317 24 12 chr4 11464561 11464644 -144165476 - PB1D10 SINE Alu -33 84 1 1 672 558 124 10 328 chr4 11464834 11464951 -144165169 - B1_Mur4 SINE Alu -11 139 86 1 672 207 0 0 0 chr4 11464951 11464974 -144165146 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 1 672 315 0 0 0 chr4 11464974 11465008 -144165112 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 672 558 124 10 328 chr4 11465008 11465093 -144165027 - B1_Mur4 SINE Alu -65 85 2 1 672 391 189 54 0 chr4 11465179 11465253 -144164867 + ID4 SINE ID 1 78 -5 1 672 249 293 80 0 chr4 11465578 11465653 -144164467 + PB1D9 SINE Alu 1 81 -39 1 672 436 250 130 0 chr4 11465588 11465696 -144164424 + ID_B1 SINE B4 92 213 -11 1 672 1350 80 11 33 chr4 11465813 11465971 -144164149 + B2_Mm1a SINE B2 1 159 -34 1 672 576 61 10 20 chr4 11465971 11466071 -144164049 + (TAAA)n Simple_repeat Simple_repeat 3 101 0 1 672 1350 80 11 33 chr4 11466071 11466094 -144164026 + B2_Mm1a SINE B2 160 178 -15 1 672 655 228 101 0 chr4 11466095 11466244 -144163876 + B3A SINE B2 1 164 -34 1 672 228 192 0 0 chr4 11466680 11466714 -144163406 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 672 1248 42 14 0 chr4 11466714 11466857 -144163263 - B1_Mus2 SINE Alu -2 145 1 1 672 228 192 0 0 chr4 11466857 11466874 -144163246 + (TTTG)n Simple_repeat Simple_repeat 4 20 0 1 672 281 360 38 38 chr4 11467853 11468038 -144162082 - MER58C DNA MER1_type -3 212 28 1 672 349 309 61 10 chr4 11468078 11468176 -144161944 - PB1D7 SINE Alu -3 117 15 1 672 2177 259 62 60 chr4 11468380 11469059 -144161061 - Lx6 LINE L1 -27 7433 6754 1 672 1494 66 11 16 chr4 11469653 11469839 -144160281 - B2_Mm1t SINE B2 -8 185 1 1 672 271 310 128 8 chr4 11470285 11470402 -144159718 + MER3 DNA MER1_type 3 133 -76 1 672 710 267 0 14 chr4 11470403 11470551 -144159569 + B1F2 SINE Alu 2 147 -2 1 672 840 266 58 10 chr4 11470608 11470813 -144159307 + B3 SINE B2 1 215 -1 1 672 1277 48 0 0 chr4 11470820 11470965 -144159155 + B1_Mm SINE Alu 1 145 -2 1 672 600 53 0 0 chr4 11470965 11471041 -144159079 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 672 419 296 104 0 chr4 11471125 11471260 -144158860 + B1F SINE Alu 1 149 0 1 672 890 182 15 0 chr4 11471310 11471447 -144158673 - B1_Mus1 SINE Alu -9 139 1 1 672 182 271 27 54 chr4 11471755 11471829 -144158291 - L3 LINE CR1 -3548 941 870 1 672 658 216 0 92 chr4 11472190 11472343 -144157777 - B1_Mur2 SINE Alu -9 140 2 1 672 1339 91 10 31 chr4 11472360 11472552 -144157568 + B2_Mm1t SINE B2 2 189 -4 1 672 642 149 19 0 chr4 11472733 11472840 -144157280 + PB1D9 SINE Alu 10 118 -2 1 672 198 91 0 0 chr4 11473597 11473630 -144156490 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 1 672 1392 71 66 0 chr4 11473635 11473818 -144156302 - B2_Mm2 SINE B2 0 195 1 1 672 518 168 230 0 chr4 11473864 11473977 -144156143 - B1F1 SINE Alu -7 142 4 1 672 862 190 156 0 chr4 11474002 11474181 -144155939 - B3 SINE B2 -8 208 2 1 672 334 360 21 29 chr4 11474365 11474505 -144155615 - B4A SINE B4 -13 279 141 1 672 384 40 0 0 chr4 11474520 11474570 -144155550 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 672 334 250 0 130 chr4 11474647 11474762 -144155358 - PB1D10 SINE Alu -2 118 17 1 672 588 261 20 71 chr4 11474799 11474997 -144155123 - B3A SINE B2 -10 188 1 1 672 270 330 94 0 chr4 11475099 11475205 -144154915 - PB1D10 SINE Alu -1 116 1 1 672 368 231 113 142 chr4 11475273 11475414 -144154706 - ID_B1 SINE B4 -4 220 84 1 672 189 211 37 37 chr4 11475565 11475619 -144154501 - MIR SINE MIR -207 55 2 1 672 287 280 40 44 chr4 11475707 11475815 -144154305 + PB1D7 SINE Alu 5 112 -8 1 672 399 21 0 0 chr4 11476429 11476477 -144153643 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 672 235 195 0 0 chr4 11476479 11476520 -144153600 - B3 SINE B2 -77 139 99 1 672 285 192 19 0 chr4 11476532 11476584 -144153536 - B3 SINE B2 -162 54 2 1 672 553 248 8 31 chr4 11477140 11477269 -144152851 - MER119 DNA MER1_type -1 582 457 1 672 427 322 158 0 chr4 11477366 11477543 -144152577 - MER119 DNA MER1_type -344 239 35 1 672 392 245 69 37 chr4 11478139 11478307 -144151813 - MLT1A0 LTR MaLR -4 386 220 1 672 1194 51 0 0 chr4 11478483 11478621 -144151499 - B1_Mm SINE Alu -9 138 1 1 672 857 126 98 8 chr4 11479282 11479439 -144150681 + B2_Mm2 SINE B2 3 172 -44 1 672 1775 21 0 0 chr4 11479478 11479667 -144150453 + B2_Mm1t SINE B2 1 189 -4 1 672 189 0 0 0 chr4 11479669 11479690 -144150430 + (A)n Simple_repeat Simple_repeat 1 21 0 1 672 441 242 86 80 chr4 11479842 11480004 -144150116 - RSINE1 SINE B4 0 165 3 1 672 1334 106 44 0 chr4 11480088 11480268 -144149852 + B2_Mm2 SINE B2 2 189 -6 1 672 504 48 0 0 chr4 11480426 11480489 -144149631 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 672 426 18 158 0 chr4 11480489 11480546 -144149574 - B1_Mm SINE Alu -9 138 73 1 672 649 202 35 0 chr4 11480616 11480730 -144149390 + PB1D9 SINE Alu 3 120 0 1 672 1259 50 0 6 chr4 11480735 11480896 -144149224 + B2_Mm2 SINE B2 2 161 -34 1 672 339 65 0 0 chr4 11480898 11480944 -144149176 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 672 779 247 39 33 chr4 11481279 11481459 -144148661 - B3A SINE B2 -16 182 2 1 672 455 278 213 93 chr4 11481520 11481778 -144148342 - B4A SINE B4 -1 291 3 1 672 326 258 61 61 chr4 11481930 11482029 -144148091 - PB1D10 SINE Alu 0 117 19 1 672 342 36 35 18 chr4 11482060 11482117 -144148003 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 1 672 597 144 216 56 chr4 11482577 11482702 -144147418 + B1_Mus1 SINE Alu 3 147 -1 1 672 1225 62 7 0 chr4 11482919 11483064 -144147056 + B1_Mus2 SINE Alu 1 146 -1 1 672 257 27 54 0 chr4 11483135 11483172 -144146948 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 672 289 246 0 0 chr4 11483273 11483330 -144146790 + PB1D10 SINE Alu 41 97 -20 1 672 1299 34 0 7 chr4 11483525 11483673 -144146447 - B1_Mus1 SINE Alu 0 148 2 1 672 639 196 7 71 chr4 11484112 11484135 -144145985 + ID_B1 SINE B4 68 211 -13 1 672 886 131 0 8 chr4 11484135 11484266 -144145854 + B1_Mur1 SINE Alu 7 136 -13 1 672 381 22 0 0 chr4 11484268 11484314 -144145806 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 672 947 183 194 0 chr4 11484418 11484598 -144145522 + B3 SINE B2 1 215 -1 1 672 396 288 60 1 chr4 11484696 11484848 -144145272 + L1MA6 LINE L1 6050 6213 -87 1 672 605 173 56 28 chr4 11484959 11485066 -144145054 - PB1D10 SINE Alu -7 110 1 1 672 290 296 25 0 chr4 11485435 11485516 -144144604 - B3 SINE B2 -10 206 124 1 672 1452 18 90 0 chr4 11487307 11487473 -144142647 - B2_Mm2 SINE B2 -14 181 1 1 672 201 94 0 0 chr4 11487941 11487973 -144142147 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 672 628 229 39 71 chr4 11487974 11488129 -144141991 - RSINE1 SINE B4 -13 152 3 1 672 560 340 12 12 chr4 11488223 11488387 -144141733 - RSINE1 SINE B4 0 165 2 1 672 378 0 0 0 chr4 11488520 11488562 -144141558 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 672 589 138 123 51 chr4 11488562 11488696 -144141424 - B1_Mur3 SINE Alu -9 140 1 1 672 315 71 0 0 chr4 11489189 11489231 -144140889 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 672 484 282 15 115 chr4 11489244 11489444 -144140676 - MT2A LTR ERVL -166 435 256 1 672 572 205 40 32 chr4 11489446 11489572 -144140548 - MT2A LTR ERVL -406 127 1 1 672 1361 208 82 36 chr4 11489572 11489889 -144140231 - ORR1D1 LTR MaLR -42 332 1 1 672 267 54 0 0 chr4 11489933 11489970 -144140150 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 672 1215 58 0 0 chr4 11489970 11490108 -144140012 - B1_Mus1 SINE Alu -9 139 2 1 672 504 284 108 15 chr4 11490108 11490312 -144139808 - B4A SINE B4 -63 229 7 1 672 211 195 451 0 chr4 11490341 11490423 -144139697 - B3 SINE B2 -2 214 96 1 672 183 156 0 0 chr4 11490653 11490685 -144139435 + CT-rich Low_complexity Low_complexity 5 36 0 1 672 274 250 27 127 chr4 11490857 11490870 -144139250 - ID_B1 SINE B4 -1 223 125 1 672 485 206 72 0 chr4 11490870 11490967 -144139153 - B1F SINE Alu -2 147 44 1 672 3899 166 105 35 chr4 11491344 11492145 -144137975 - RMER13B LTR ERVK -51 857 1 1 672 706 238 102 0 chr4 11492172 11492319 -144137801 + RSINE1 SINE B4 3 164 -1 1 672 1485 71 39 0 chr4 11492363 11492545 -144137575 + B2_Mm2 SINE B2 1 189 -6 1 672 246 280 155 29 chr4 11492776 11492879 -144137241 + PB1D10 SINE Alu 2 117 0 1 672 1008 243 14 9 chr4 11492929 11493141 -144136979 - B3 SINE B2 -2 214 2 1 672 1133 191 20 5 chr4 11493214 11493409 -144136711 - B3 SINE B2 -16 200 3 1 672 22 0 0 0 chr4 11493415 11493437 -144136683 + AT_rich Low_complexity Low_complexity 1 22 0 1 672 381 290 108 20 chr4 11493471 11493619 -144136501 - ID_B1 SINE B4 0 224 64 1 672 521 197 59 17 chr4 11493619 11493738 -144136382 - L1MB4 LINE L1 -51 6129 6006 1 672 456 264 106 20 chr4 11493944 11494095 -144136025 - RSINE1 SINE B4 0 165 2 1 672 616 219 199 16 chr4 11494096 11494282 -144135838 - ID_B1 SINE B4 -3 221 2 1 672 604 235 121 0 chr4 11494334 11494466 -144135654 - B1_Mus1 SINE Alu 0 148 1 1 672 225 154 0 0 chr4 11494511 11494550 -144135570 + CT-rich Low_complexity Low_complexity 2 40 0 1 672 697 171 163 0 chr4 11494574 11494697 -144135423 - B1_Mur4 SINE Alu -7 143 1 1 672 595 269 78 28 chr4 11494708 11494771 -144135349 - L1MB8 LINE L1 -77 6101 6034 1 672 275 0 29 0 chr4 11494771 11494806 -144135314 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1 672 595 269 78 28 chr4 11494806 11495025 -144135095 - L1MB8 LINE L1 -145 6033 5806 1 672 291 302 52 0 chr4 11495026 11495122 -144134998 - MLT1D LTR MaLR -2 503 403 1 672 291 213 26 26 chr4 11495122 11495199 -144134921 + L1M2 LINE L1 5737 5813 -487 1 672 1310 270 69 3 chr4 11495222 11495568 -144134552 - ORR1D2 LTR MaLR 0 370 2 1 672 1267 115 38 0 chr4 11495951 11496134 -144133986 + B2_Mm2 SINE B2 2 191 -4 1 672 26 30 0 0 chr4 11496161 11496194 -144133926 + AT_rich Low_complexity Low_complexity 1 33 0 1 672 910 73 0 299 chr4 11496199 11496311 -144133809 + B1_Mur4 SINE Alu 1 65 -85 1 672 1262 61 0 13 chr4 11496311 11496460 -144133660 - B1_Mm SINE Alu 0 147 1 1 672 910 73 0 299 chr4 11496460 11496561 -144133559 + B1_Mur4 SINE Alu 66 150 0 1 672 360 246 0 0 chr4 11496643 11496712 -144133408 - ID2 SINE ID 0 83 15 1 672 345 203 13 26 chr4 11497256 11497332 -144132788 + ID4 SINE ID 9 83 0 1 672 300 53 0 0 chr4 11497672 11497710 -144132410 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 672 1164 43 43 0 chr4 11497711 11497850 -144132270 - B1_Mm SINE Alu 0 147 3 1 672 230 81 27 0 chr4 11497852 11497889 -144132231 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 672 1389 61 0 0 chr4 11498175 11498355 -144131765 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 672 711 171 0 83 chr4 11498358 11498744 -144131376 + CT-rich Low_complexity Low_complexity 1 353 0 1 672 291 338 0 10 chr4 11499292 11499379 -144130741 - ID4 SINE ID -59 93 10 1 672 2587 142 68 8 chr4 11499568 11499964 -144130156 - MTC LTR MaLR 0 421 2 1 672 333 147 24 85 chr4 11500166 11500246 -144129874 + MT2B LTR ERVL 1 75 -526 1 672 1649 154 10 0 chr4 11500246 11500545 -144129575 + RMER4A LTR ERVK 1 302 -164 2 672 207 0 0 0 chr4 11500742 11500765 -144129355 + (T)n Simple_repeat Simple_repeat 1 23 0 3 672 354 191 248 37 chr4 11501366 11501475 -144128645 + RSINE1 SINE B4 3 134 -31 4 672 297 302 141 16 chr4 11501534 11501726 -144128394 - L1MA9 LINE L1 -63 6249 6034 5 672 409 273 35 52 chr4 11501726 11501842 -144128278 - PB1D10 SINE Alu -2 115 2 6 672 417 191 75 34 chr4 11501846 11501992 -144128128 - L1M4 LINE L1 -743 5435 5284 7 672 295 306 116 9 chr4 11502336 11502448 -144127672 + LTR53 LTR ERVL 394 517 -2 8 672 489 241 280 74 chr4 11502680 11503076 -144127044 - RLTR18B LTR ERVK -4 508 7 9 672 242 302 0 16 chr4 11503117 11503181 -144126939 - B1F1 SINE Alu -86 63 1 1 672 268 309 103 0 chr4 11503201 11503298 -144126822 - PB1D10 SINE Alu -9 108 2 1 672 597 279 33 47 chr4 11504101 11504315 -144125805 - B4A SINE B4 0 292 82 1 672 414 135 266 46 chr4 11504316 11504425 -144125695 - B1_Mur4 SINE Alu 0 150 18 1 672 297 287 0 11 chr4 11504419 11504507 -144125613 - B4A SINE B4 -204 88 2 1 672 212 281 0 34 chr4 11504513 11504572 -144125548 - PB1D10 SINE Alu -6 111 55 1 672 2141 209 80 14 chr4 11504625 11505125 -144124995 - RMER16 LTR ERVK 0 533 1 1 672 276 194 181 0 chr4 11505222 11505294 -144124826 + B1F SINE Alu 56 140 -9 1 672 317 276 41 0 chr4 11505631 11505729 -144124391 - RSINE1 SINE B4 -60 105 4 1 672 242 259 0 0 chr4 11505784 11505838 -144124282 - tRNA-Ala-GCY_ tRNA tRNA -5 70 17 1 672 22 0 0 0 chr4 11507693 11507715 -144122405 + AT_rich Low_complexity Low_complexity 1 22 0 1 672 21 0 0 0 chr4 11508435 11508456 -144121664 + AT_rich Low_complexity Low_complexity 1 21 0 2 672 312 70 0 0 chr4 11508850 11508893 -144121227 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 672 23 0 0 0 chr4 11509059 11509082 -144121038 + AT_rich Low_complexity Low_complexity 1 23 0 2 672 29 28 0 0 chr4 11509221 11509257 -144120863 + AT_rich Low_complexity Low_complexity 1 36 0 2 672 1353 93 16 5 chr4 11509279 11509463 -144120657 - B2_Mm2 SINE B2 -9 186 1 2 672 417 135 333 0 chr4 11509797 11509917 -144120203 + URR1B DNA MER1_type 2 161 -64 2 672 520 216 203 29 chr4 11510075 11510213 -144119907 + RSINE1 SINE B4 3 164 -1 2 672 361 233 77 11 chr4 11510244 11510335 -144119785 + B4A SINE B4 5 101 -191 2 672 207 0 0 0 chr4 11510405 11510428 -144119692 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2 672 522 122 126 48 chr4 11510480 11510583 -144119537 - B1_Mus2 SINE Alu -18 129 19 2 672 470 236 36 0 chr4 11510599 11510709 -144119411 - PB1D9 SINE Alu -2 118 5 3 672 21 0 0 0 chr4 11510744 11510765 -144119355 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 594 62 0 0 chr4 11511502 11511583 -144118537 - B1_Mur3 SINE Alu 0 149 69 3 672 326 228 0 32 chr4 11511583 11511597 -144118523 - ID_B1 SINE B4 0 224 133 3 672 493 260 31 0 chr4 11511771 11511898 -144118222 + ID_B1 SINE B4 93 223 -1 3 672 420 289 10 0 chr4 11512074 11512178 -144117942 - PB1D10 SINE Alu 0 117 13 3 672 21 36 0 0 chr4 11512658 11512686 -144117434 + AT_rich Low_complexity Low_complexity 1 28 0 3 672 374 188 82 0 chr4 11513169 11513254 -144116866 - B1_Mur1 SINE Alu -41 108 17 3 672 357 284 57 63 chr4 11513901 11514059 -144116061 + ID_B1 SINE B4 2 158 -66 3 672 818 141 7 75 chr4 11514090 11514236 -144115884 - B1_Mur4 SINE Alu -13 137 2 3 672 1338 116 21 29 chr4 11514952 11515192 -144114928 + MTC LTR MaLR 184 421 0 4 672 285 206 16 0 chr4 11515290 11515353 -144114767 - B1_Mur4 SINE Alu -2 148 85 4 672 1477 58 21 5 chr4 11515494 11515684 -144114436 + B2_Mm2 SINE B2 2 194 -1 4 672 929 200 56 26 chr4 11515698 11515893 -144114227 - B3 SINE B2 -14 202 2 4 672 608 314 52 5 chr4 11515943 11516135 -144113985 + ID_B1 SINE B4 12 212 -12 4 672 1292 223 103 12 chr4 11516195 11516535 -144113585 + ORR1D1 LTR MaLR 1 371 -3 4 672 250 264 266 26 chr4 11516771 11516884 -144113236 + B1_Mur1 SINE Alu 5 144 -5 4 672 240 35 0 0 chr4 11516987 11517016 -144113104 + (T)n Simple_repeat Simple_repeat 1 29 0 4 672 198 167 0 0 chr4 11517335 11517371 -144112749 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 672 289 292 47 62 chr4 11517467 11517595 -144112525 - B4A SINE B4 0 292 167 4 672 3710 166 95 31 chr4 11517589 11518472 -144111648 - RMER17B LTR ERVK -4 954 15 5 672 21 0 0 0 chr4 11518579 11518600 -144111520 + AT_rich Low_complexity Low_complexity 1 21 0 5 672 289 277 78 10 chr4 11518716 11518818 -144111302 - B1F SINE Alu -1 148 40 5 672 766 245 62 0 chr4 11519032 11519224 -144110896 - B3 SINE B2 -12 204 1 5 672 207 0 0 0 chr4 11519234 11519257 -144110863 + (T)n Simple_repeat Simple_repeat 1 23 0 5 672 248 111 0 0 chr4 11519362 11519398 -144110722 - B1F SINE Alu -23 126 91 5 672 346 261 191 31 chr4 11519549 11519566 -144110554 + L1MA9 LINE L1 5812 5828 -484 5 672 633 217 71 21 chr4 11519566 11519707 -144110413 + B1_Mur4 SINE Alu 2 149 -1 5 672 346 265 198 32 chr4 11519707 11519891 -144110229 + L1MA9 LINE L1 5829 6051 -138 5 672 567 218 38 64 chr4 11520168 11520325 -144109795 - RSINE1 SINE B4 -10 155 3 5 672 235 259 98 12 chr4 11520387 11520469 -144109651 - PB1D10 SINE Alu -2 115 27 5 672 1221 108 23 0 chr4 11520553 11520729 -144109391 + B2_Mm2 SINE B2 1 180 -15 6 672 1216 206 219 6 chr4 11521713 11522055 -144108065 - RMER1B Other Other -650 416 2 6 672 321 26 0 0 chr4 11522222 11522260 -144107860 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 672 216 0 0 0 chr4 11522260 11522283 -144107837 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 672 28 29 0 0 chr4 11522511 11522546 -144107574 + AT_rich Low_complexity Low_complexity 1 35 0 6 672 912 156 0 26 chr4 11523138 11523289 -144106831 - B1_Mur4 SINE Alu 0 150 4 6 672 303 257 14 0 chr4 11523370 11523440 -144106680 + B1F SINE Alu 71 141 -8 6 672 1746 204 26 11 chr4 11524381 11524763 -144105357 + MTD LTR MaLR 1 388 -31 6 672 198 0 0 0 chr4 11525247 11525269 -144104851 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 672 217 320 123 0 chr4 11525385 11525507 -144104613 - MIRc SINE MIR -59 209 73 6 672 405 0 0 0 chr4 11525584 11525629 -144104491 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 672 261 235 174 12 chr4 11526056 11526142 -144103978 - B4A SINE B4 -192 100 1 7 672 230 281 0 0 chr4 11527303 11527360 -144102760 + PB1D10 SINE Alu 41 97 -20 7 672 345 82 0 0 chr4 11527378 11527427 -144102693 + (CATA)n Simple_repeat Simple_repeat 3 51 0 7 672 298 250 0 0 chr4 11527457 11527525 -144102595 - MER47A DNA MER2_type -106 260 193 7 672 321 163 128 0 chr4 11527913 11527999 -144102121 - MER47A DNA MER2_type -169 197 101 7 672 351 271 67 44 chr4 11528065 11528200 -144101920 + MLT1A LTR MaLR 61 198 -176 7 672 361 316 18 0 chr4 11529191 11529305 -144100815 + MIR SINE MIR 90 205 -57 7 672 21 36 0 0 chr4 11529355 11529383 -144100737 + AT_rich Low_complexity Low_complexity 1 28 0 7 672 494 211 57 19 chr4 11529384 11529543 -144100577 - RSINE1 SINE B4 0 165 1 7 672 1635 242 65 42 chr4 11530550 11530857 -144099263 - Lx6 LINE L1 0 7460 7146 7 672 1115 58 7 0 chr4 11530857 11530994 -144099126 + B1_Mus2 SINE Alu 1 138 -9 8 672 183 42 0 0 chr4 11530994 11531018 -144099102 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 672 1635 242 65 42 chr4 11531018 11531141 -144098979 - Lx6 LINE L1 -315 7145 7020 7 672 330 24 0 0 chr4 11531460 11531471 -144098649 + (T)n Simple_repeat Simple_repeat 1 11 0 8 672 987 61 114 0 chr4 11531471 11531603 -144098517 - B1_Mus2 SINE Alu 0 147 1 8 672 330 24 0 0 chr4 11531603 11531632 -144098488 + (T)n Simple_repeat Simple_repeat 1 29 0 8 672 1325 94 39 0 chr4 11532240 11532421 -144097699 - B2_Mm2 SINE B2 -7 188 1 8 672 1056 40 20 0 chr4 11532584 11532734 -144097386 + (CA)n Simple_repeat Simple_repeat 1 153 0 8 672 271 247 0 144 chr4 11532734 11532824 -144097296 + B1_Mur2 SINE Alu 62 138 -11 8 672 219 218 191 22 chr4 11532872 11532961 -144097159 - PB1D7 SINE Alu -4 116 13 8 672 393 275 76 14 chr4 11532894 11533038 -144097082 - ID_B1 SINE B4 -55 169 17 8 672 295 195 37 0 chr4 11533698 11533780 -144096340 - L1ME4a LINE L1 0 6124 6040 9 672 312 231 37 37 chr4 11533798 11533879 -144096241 + PB1D7 SINE Alu 40 120 0 9 672 257 377 24 24 chr4 11534051 11534176 -144095944 - PB1 SINE Alu -2 125 1 9 672 606 186 0 92 chr4 11534191 11534321 -144095799 + B1_Mus2 SINE Alu 12 129 -18 9 673 269 238 48 170 chr4 11535339 11535486 -144094634 + MT2B LTR ERVL 143 271 -330 9 673 553 221 25 0 chr4 11535381 11535503 -144094617 + B1_Mur1 SINE Alu 9 133 -16 9 673 471 207 177 7 chr4 11536822 11536963 -144093157 + B3A SINE B2 2 166 -32 9 673 468 0 0 0 chr4 11536970 11537022 -144093098 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 673 197 350 25 8 chr4 11537787 11537905 -144092215 - MIRb SINE MIR -18 250 131 9 673 479 311 153 10 chr4 11538200 11538508 -144091612 - MER77 LTR ERVL -48 559 208 9 673 300 250 106 100 chr4 11539256 11539416 -144090704 - RSINE1 SINE B4 0 165 5 1 673 280 238 37 12 chr4 11540503 11540584 -144089536 + B4A SINE B4 1 83 -209 1 673 212 203 46 15 chr4 11540787 11540852 -144089268 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 1 673 233 338 54 0 chr4 11540853 11540927 -144089193 - ID4_ SINE ID -2 81 4 1 673 427 159 22 41 chr4 11541083 11541190 -144088930 - B1_Mur1 SINE Alu -2 147 46 1 673 300 248 197 8 chr4 11541301 11541423 -144088697 - B1_Mur1 SINE Alu 0 149 5 1 673 331 255 183 0 chr4 11541436 11541589 -144088531 - L1M5 LINE L1 -3094 3052 2872 1 673 319 268 62 23 chr4 11541946 11542076 -144088044 + B3 SINE B2 82 216 0 1 673 403 263 94 26 chr4 11543046 11543290 -144086830 - L1M3 LINE L1 -485 5395 5134 1 673 228 232 14 0 chr4 11543928 11543997 -144086123 - RMER21B LTR ERV1 -683 159 90 1 673 590 232 30 3 chr4 11544052 11544258 -144085862 - L1M3 LINE L1 -1440 4703 4423 1 673 1691 202 331 28 chr4 11544340 11545016 -144085104 - RMER21A LTR ERV1 -66 881 1 1 673 741 70 0 0 chr4 11545036 11545136 -144084984 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 1 673 396 0 0 0 chr4 11545138 11545182 -144084938 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 1 673 348 117 26 14 chr4 11545182 11545278 -144084842 - B2_Mm2 SINE B2 -15 180 47 1 673 1081 99 99 0 chr4 11545326 11545488 -144084632 - B2_Mm1t SINE B2 -14 179 2 1 673 5534 30 0 0 chr4 11545674 11546308 -144083812 + L1Md_T LINE L1 5949 6582 0 1 673 185 250 31 62 chr4 11546535 11546599 -144083521 + L2c LINE L2 3263 3324 -63 1 673 576 144 85 0 chr4 11546851 11546969 -144083151 + ORR1D2-int LTR MaLR 1214 1341 -29 1 673 3208 155 52 12 chr4 11546973 11547567 -144082553 + RMER20B LTR ERVK 10 627 0 1 673 466 99 24 47 chr4 11547598 11547683 -144082437 + ORR1D2 LTR MaLR 1 83 -287 1 673 1745 159 14 28 chr4 11547792 11548153 -144081967 - ORR1B2 LTR MaLR -8 359 4 1 673 1406 71 16 11 chr4 11548252 11548437 -144081683 + B2_Mm2 SINE B2 2 187 -8 1 673 1043 8 0 8 chr4 11548441 11548574 -144081546 + B1_Mus1 SINE Alu 14 145 -3 1 673 474 149 0 0 chr4 11548588 11548675 -144081445 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 673 1137 215 133 41 chr4 11548812 11549151 -144080969 + ORR1C2 LTR MaLR 7 376 -8 1 673 1696 204 101 26 chr4 11549186 11549690 -144080430 - RLTR20B3 LTR ERVK -35 542 1 1 673 198 0 0 0 chr4 11550124 11550146 -144079974 + (T)n Simple_repeat Simple_repeat 1 22 0 1 673 1021 23 8 0 chr4 11550640 11550771 -144079349 - B1_Mus2 SINE Alu 0 147 16 1 673 969 299 82 30 chr4 11551509 11551745 -144078375 + L1MA4 LINE L1 5217 5486 -814 1 673 715 213 57 0 chr4 11551745 11551886 -144078234 + B1_Mur3 SINE Alu 1 149 0 1 673 969 296 83 27 chr4 11551886 11552203 -144077917 + L1MA4 LINE L1 5455 5829 -471 1 673 799 220 35 13 chr4 11552203 11552395 -144077725 + B3A SINE B2 3 189 -6 1 673 324 83 0 0 chr4 11552398 11552446 -144077674 + B1_Mus2 SINE Alu 3 50 -97 1 673 1259 225 112 29 chr4 11552612 11552997 -144077123 + MTD LTR MaLR 1 417 -2 1 673 864 198 4 155 chr4 11553146 11553232 -144076888 - B3 SINE B2 -13 203 136 1 673 1131 83 7 0 chr4 11553232 11553377 -144076743 + B1_Mus2 SINE Alu 2 147 0 1 673 864 198 4 155 chr4 11553377 11553529 -144076591 - B3 SINE B2 -81 135 1 1 673 21 0 0 0 chr4 11553533 11553554 -144076566 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 398 306 0 0 chr4 11553950 11554058 -144076062 + PB1D7 SINE Alu 4 111 -9 1 673 688 185 116 32 chr4 11554069 11554259 -144075861 + B3 SINE B2 3 208 -8 1 673 31 26 0 0 chr4 11554594 11554632 -144075488 + AT_rich Low_complexity Low_complexity 1 38 0 1 673 196 186 0 23 chr4 11554735 11554779 -144075341 - MIRc SINE MIR -110 158 116 1 673 514 226 47 39 chr4 11555018 11555147 -144074973 + RSINE1 SINE B4 3 132 -33 1 673 1252 193 60 0 chr4 11555547 11555805 -144074315 + RMER1B Other Other 596 855 -211 1 673 486 0 0 0 chr4 11555805 11555859 -144074261 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 673 609 229 131 0 chr4 11555859 11555893 -144074227 + RMER1C Other Other 247 288 -1054 1 673 1020 273 3 73 chr4 11556252 11556568 -144073552 + RMER1C Other Other 490 783 -559 1 673 856 131 59 6 chr4 11556575 11556762 -144073358 + ORR1A3 LTR MaLR 1 193 -136 1 673 798 128 108 0 chr4 11556723 11556871 -144073249 - ORR1A1-int LTR MaLR -1798 165 2 1 673 2083 112 22 61 chr4 11556872 11557232 -144072888 - ORR1A1 LTR MaLR 0 346 1 1 673 3597 200 34 30 chr4 11557232 11557974 -144072146 + RMER1C Other Other 598 1342 0 1 673 751 224 71 25 chr4 11558912 11559109 -144071011 - Lx6 LINE L1 -26 7434 7229 1 673 245 190 291 0 chr4 11559175 11559254 -144070866 - B3 SINE B2 -2 214 113 1 673 234 0 0 0 chr4 11559258 11559284 -144070836 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 673 732 92 0 104 chr4 11559285 11559419 -144070701 - B1_Mus1 SINE Alu -7 141 22 1 673 576 151 79 8 chr4 11559476 11559603 -144070517 - RMER1B Other Other -12 1054 919 1 673 396 0 0 0 chr4 11559644 11559688 -144070432 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 1 673 198 0 0 0 chr4 11559688 11559710 -144070410 + (A)n Simple_repeat Simple_repeat 1 22 0 1 673 472 246 52 31 chr4 11559882 11560099 -144070021 - L1M4 LINE L1 -842 5304 5084 1 673 483 264 35 0 chr4 11560889 11561033 -144069087 + MER34 LTR ERV1 30 178 -364 1 673 224 256 238 9 chr4 11561062 11561168 -144068952 - B1F2 SINE Alu -30 119 3 1 673 406 46 0 30 chr4 11561657 11561724 -144068396 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 673 1896 286 58 78 chr4 11561796 11562093 -144068027 - Lx8 LINE L1 -49 7424 7139 1 673 1098 222 5 0 chr4 11562093 11562300 -144067820 - B3 SINE B2 -5 211 4 1 673 1896 286 58 78 chr4 11562300 11562849 -144067271 - Lx8 LINE L1 -335 7138 6595 1 673 25 0 0 0 chr4 11562894 11562919 -144067201 + AT_rich Low_complexity Low_complexity 1 25 0 1 673 1474 181 36 45 chr4 11562926 11563283 -144066837 - Lx4A LINE L1 -2 7056 6716 1 673 1719 26 0 0 chr4 11563357 11563550 -144066570 - B2_Mm1a SINE B2 0 193 1 1 673 373 235 140 29 chr4 11563650 11563821 -144066299 - L1M4 LINE L1 -2943 3203 3014 1 673 712 256 6 0 chr4 11563854 11564014 -144066106 - RSINE1 SINE B4 -2 163 3 1 673 2263 186 207 9 chr4 11564206 11564782 -144065338 - RMER6C LTR ERVK 0 690 1 1 673 781 320 74 8 chr4 11564815 11565180 -144064940 - L1ME1 LINE L1 -183 5996 5608 1 673 212 232 157 83 chr4 11565316 11565424 -144064696 - PB1D10 SINE Alu -1 116 1 1 673 1850 142 64 99 chr4 11565570 11565962 -144064158 + ORR1C1 LTR MaLR 1 378 0 1 673 585 327 6 0 chr4 11566726 11566888 -144063232 + RSINE1 SINE B4 3 165 0 1 673 204 182 0 0 chr4 11566893 11566937 -144063183 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 673 23115 141 11 8 chr4 11567004 11571388 -144058732 + L1VL4 LINE L1 700 5096 -787 1 673 1080 208 9 4 chr4 11571394 11571621 -144058499 + RMER19A LTR ERVK 510 737 0 1 673 921 312 75 14 chr4 11571621 11572139 -144057981 + RMER15-int LTR ERVL 2012 2560 -2439 1 673 483 294 70 11 chr4 11572200 11572386 -144057734 + RMER15-int LTR ERVL 4568 4764 -235 1 673 432 0 0 0 chr4 11572624 11572672 -144057448 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 673 531 248 44 0 chr4 11572674 11572787 -144057333 - RSINE1 SINE B4 -46 119 2 1 673 39 0 0 0 chr4 11572791 11572830 -144057290 + AT_rich Low_complexity Low_complexity 1 39 0 1 673 3378 42 0 17 chr4 11572853 11573263 -144056857 - L1_Mus1 LINE L1 0 6567 6165 1 673 430 190 25 0 chr4 11573447 11573526 -144056594 - ID4_ SINE ID 0 83 3 1 673 540 0 0 0 chr4 11573984 11574044 -144056076 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 673 347 138 12 70 chr4 11574044 11574130 -144055990 - Lx4A LINE L1 -19 7039 6959 1 673 1156 61 49 0 chr4 11574199 11574363 -144055757 + ORR1A2 LTR MaLR 156 327 0 1 673 794 190 0 34 chr4 11574476 11574623 -144055497 - B1_Mur1 SINE Alu -4 145 4 1 673 614 160 19 0 chr4 11574628 11574734 -144055386 - ID_B1 SINE B4 -7 217 110 1 673 21 0 0 0 chr4 11574738 11574759 -144055361 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 2268 144 5 18 chr4 11575736 11576124 -144053996 + MTC LTR MaLR 39 421 0 1 673 2697 161 131 15 chr4 11576123 11576711 -144053409 + MTC-int LTR MaLR 2 657 -601 1 673 499 219 54 7 chr4 11577905 11578052 -144052068 + MTC-int LTR MaLR 1087 1240 -18 1 673 576 189 148 0 chr4 11578052 11578174 -144051946 + B1_Mus1 SINE Alu 1 140 -8 1 673 1971 183 71 13 chr4 11578257 11578650 -144051470 + MTC LTR MaLR 5 420 -1 1 673 530 240 45 39 chr4 11578651 11578829 -144051291 + B3 SINE B2 38 216 0 1 673 803 131 58 0 chr4 11578940 11579077 -144051043 - B1_Mur4 SINE Alu -1 149 5 1 673 269 0 56 0 chr4 11579419 11579455 -144050665 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 1 673 516 275 158 9 chr4 11579699 11580011 -144050109 - MTE2a LTR MaLR -3 376 10 1 673 677 253 20 7 chr4 11580138 11580285 -144049835 - RSINE1 SINE B4 -3 162 14 1 673 515 281 96 59 chr4 11581971 11582274 -144047846 - MLT1D LTR MaLR -183 322 9 1 673 822 210 65 18 chr4 11582375 11582545 -144047575 - Lx9 LINE L1 -1074 6570 6393 1 673 23 0 0 0 chr4 11583265 11583288 -144046832 + AT_rich Low_complexity Low_complexity 1 23 0 1 673 785 171 11 78 chr4 11583297 11583488 -144046632 - B2_Mm2 SINE B2 -8 187 10 1 673 819 240 65 69 chr4 11583556 11583847 -144046273 - B4A SINE B4 0 292 3 1 673 328 185 15 0 chr4 11583858 11583923 -144046197 - ID4 SINE ID -1 82 17 1 673 1516 220 68 27 chr4 11584275 11584644 -144045476 + MTD LTR MaLR 18 401 -18 1 673 249 33 0 0 chr4 11584929 11584959 -144045161 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 673 399 89 0 0 chr4 11584960 11585016 -144045104 + (GGGAGA)n Simple_repeat Simple_repeat 3 58 0 1 673 575 211 157 0 chr4 11585023 11585170 -144044950 - B3 SINE B2 -46 170 1 1 673 1234 48 0 0 chr4 11585192 11585337 -144044783 - B1_Mus2 SINE Alu 0 147 3 1 673 639 278 6 23 chr4 11585614 11585791 -144044329 + ID_B1 SINE B4 3 176 -48 2 673 494 272 52 0 chr4 11585698 11585834 -144044286 + B1F2 SINE Alu 6 148 -1 2 673 901 222 82 5 chr4 11586993 11587188 -144042932 - B3 SINE B2 -6 210 1 2 673 260 254 26 26 chr4 11587291 11587404 -144042716 - L1ME1 LINE L1 -226 5953 5841 2 673 482 240 99 46 chr4 11587569 11587653 -144042467 + B1F2 SINE Alu 5 86 -63 2 673 1900 169 25 66 chr4 11587653 11588047 -144042073 - ORR1C1 LTR MaLR 0 378 1 2 673 482 240 99 46 chr4 11588047 11588093 -144042027 + B1F2 SINE Alu 87 142 -7 2 673 180 179 0 0 chr4 11588101 11588140 -144041980 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 2 673 607 287 72 19 chr4 11588433 11588696 -144041424 - ORR1E LTR MaLR -54 305 29 2 673 5163 155 55 9 chr4 11589550 11590418 -144039702 + RMER13B LTR ERVK 1 908 0 2 673 1420 243 38 27 chr4 11591064 11591432 -144038688 - MTE2a LTR MaLR -3 376 5 2 673 445 221 33 61 chr4 11591461 11591729 -144038391 - MTE2a-int LTR MaLR 0 1580 1419 2 673 289 219 122 0 chr4 11591745 11591827 -144038293 + L1M2 LINE L1 3575 3666 -2477 2 673 361 241 56 0 chr4 11591822 11591930 -144038190 + L1M2 LINE L1 5181 5294 -849 2 673 641 154 35 52 chr4 11592019 11592206 -144037914 + ORR1C2 LTR MaLR 1 136 -248 2 673 2094 138 109 76 chr4 11592206 11592638 -144037482 - RLTR41 LTR ERV1 0 446 1 2 673 609 180 31 74 chr4 11592638 11592701 -144037419 + ORR1C2-int LTR MaLR 1103 1162 -347 2 673 1111 209 73 67 chr4 11592701 11593101 -144037019 + RMER16 LTR ERVK 1 532 -1 2 673 1032 150 106 59 chr4 11593102 11593231 -144036889 + ORR1C2-int LTR MaLR 1167 1301 -208 2 673 221 57 29 0 chr4 11593231 11593266 -144036854 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 673 1032 150 106 59 chr4 11593266 11593391 -144036729 + ORR1C2-int LTR MaLR 1302 1433 -76 2 673 1348 158 189 94 chr4 11593424 11593774 -144036346 + ORR1C2 LTR MaLR 2 384 0 2 673 866 236 14 37 chr4 11594068 11594284 -144035836 + B3 SINE B2 1 211 -5 2 673 201 171 0 0 chr4 11594296 11594331 -144035789 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 673 3822 213 36 68 chr4 11594492 11595426 -144034694 - RMER13B LTR ERVK 0 908 5 2 673 185 225 25 0 chr4 11595601 11595641 -144034479 + MIR SINE MIR 111 151 -111 2 673 1146 68 7 0 chr4 11596404 11596550 -144033570 - B1_Mus1 SINE Alu 0 148 2 2 673 264 200 18 0 chr4 11596617 11596672 -144033448 - RSINE1 SINE B4 -102 63 8 2 673 340 298 14 34 chr4 11596708 11596854 -144033266 + MLT2D LTR ERVL 128 270 -144 2 673 678 149 57 0 chr4 11596902 11597043 -144033077 + URR1A DNA MER1_type 78 226 0 2 673 698 132 45 22 chr4 11597465 11597778 -144032342 + (CA)n Simple_repeat Simple_repeat 1 320 0 2 673 439 123 60 24 chr4 11597801 11597968 -144032152 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 673 798 291 98 38 chr4 11597970 11598020 -144032100 - LTR40b LTR ERVL 0 462 416 2 673 1280 226 84 45 chr4 11598020 11598376 -144031744 + ORR1D2 LTR MaLR 1 370 0 2 673 798 291 98 38 chr4 11598376 11598693 -144031427 - LTR40b LTR ERVL -47 415 73 2 673 339 336 8 15 chr4 11598674 11598804 -144031316 + ID_B1 SINE B4 64 192 -32 2 673 287 316 79 34 chr4 11598961 11599138 -144030982 + MIRb SINE MIR 54 238 -30 2 673 252 59 0 0 chr4 11599764 11599798 -144030322 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 2 673 229 339 38 53 chr4 11600771 11600902 -144029218 - MIRc SINE MIR -75 193 65 2 673 250 299 105 72 chr4 11601647 11601856 -144028264 + MER2 DNA MER2_type 1 216 -129 2 673 243 79 0 0 chr4 11601927 11601965 -144028155 + (CCCCCT)n Simple_repeat Simple_repeat 3 40 0 2 673 1106 95 18 0 chr4 11601967 11602135 -144027985 + (TTCTCC)n Simple_repeat Simple_repeat 6 176 0 2 673 1177 57 0 0 chr4 11602137 11602277 -144027843 - B1_Mus2 SINE Alu -6 141 2 2 673 347 113 16 0 chr4 11603812 11603874 -144026246 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 673 737 144 0 8 chr4 11604141 11604206 -144025914 + polypurine Low_complexity Low_complexity 3 67 0 2 673 1125 75 14 0 chr4 11604206 11604352 -144025768 + B1_Mus1 SINE Alu 1 148 0 2 673 737 144 0 8 chr4 11604352 11604419 -144025701 + polypurine Low_complexity Low_complexity 68 134 0 2 673 852 212 139 25 chr4 11604528 11604808 -144025312 + MTE2a LTR MaLR 68 379 0 2 673 2157 299 134 38 chr4 11604809 11606140 -144023980 + MTE2a-int LTR MaLR 3 1580 0 2 673 591 224 0 23 chr4 11606145 11606273 -144023847 + MTE2a LTR MaLR 6 130 -249 2 673 293 218 67 33 chr4 11606257 11606347 -144023773 + MTE2a LTR MaLR 287 379 0 2 673 249 173 0 0 chr4 11606351 11606403 -144023717 + Lx8 LINE L1 7419 7470 -3 2 673 1619 230 95 45 chr4 11606422 11607072 -144023048 - L1M3f LINE L1 -2559 4544 3862 2 673 315 147 189 38 chr4 11607081 11607187 -144022933 - Lx9 LINE L1 -19 7625 7504 2 673 351 179 0 0 chr4 11607226 11607293 -144022827 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 673 385 330 42 0 chr4 11607338 11607456 -144022664 - RSINE1 SINE B4 -41 124 2 2 673 514 245 30 12 chr4 11607456 11607621 -144022499 - L1M3f LINE L1 -3215 3888 3721 2 673 4157 172 14 13 chr4 11607613 11608697 -144021423 - L1_Mur3 LINE L1 -3904 1973 892 2 673 287 49 24 0 chr4 11609027 11609068 -144021052 + (TATG)n Simple_repeat Simple_repeat 2 43 0 2 673 421 326 28 0 chr4 11609070 11609214 -144020906 - RSINE1 SINE B4 -15 150 3 2 673 390 265 103 60 chr4 11609219 11609452 -144020668 - L1M3f LINE L1 -4138 1968 1726 2 673 377 251 69 63 chr4 11610221 11610395 -144019725 - L1M3f LINE L1 -6848 182 8 2 673 480 100 0 14 chr4 11611273 11611344 -144018776 + Lx LINE L1 5652 5721 -933 2 673 1888 130 11 3 chr4 11611392 11611678 -144018442 + ORR1A2 LTR MaLR 2 289 -38 2 673 8097 79 5 9 chr4 11611678 11613135 -144016985 + L1_Mus3 LINE L1 5183 6633 -5 2 673 430 91 0 0 chr4 11613135 11613190 -144016930 + ORR1A2 LTR MaLR 272 326 0 2 673 304 263 78 29 chr4 11613215 11613317 -144016803 - RSINE1 SINE B4 0 165 59 2 673 207 0 0 0 chr4 11613468 11613491 -144016629 + (T)n Simple_repeat Simple_repeat 1 23 0 2 673 347 280 78 23 chr4 11613799 11613927 -144016193 - MLT1A1 LTR MaLR -5 403 269 2 673 236 243 53 135 chr4 11614047 11614180 -144015940 - MLT1A1 LTR MaLR -286 122 1 2 673 765 61 0 0 chr4 11614198 11614297 -144015823 + (GGGAGA)n Simple_repeat Simple_repeat 5 103 0 2 673 305 24 24 0 chr4 11614574 11614616 -144015504 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 673 437 188 197 0 chr4 11615039 11615156 -144014964 - B1F2 SINE Alu -9 140 1 2 673 201 222 18 18 chr4 11615851 11615906 -144014214 + MIRc SINE MIR 114 168 -100 2 673 428 216 0 0 chr4 11615959 11616033 -144014087 + ID4 SINE ID 9 82 -1 2 673 365 247 135 0 chr4 11616033 11616048 -144014072 + ID_B1 SINE B4 9 109 -115 2 673 243 0 0 0 chr4 11616517 11616544 -144013576 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 673 692 217 16 62 chr4 11617191 11617383 -144012737 + B3A SINE B2 1 183 -15 2 673 467 304 84 118 chr4 11617493 11617780 -144012340 + MLT1E2 LTR MaLR 50 326 -301 2 673 252 100 0 0 chr4 11617809 11617849 -144012271 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 2 673 652 309 19 69 chr4 11617849 11618144 -144011976 + MLT1E2-int LTR MaLR 702 1028 -461 2 673 607 229 13 67 chr4 11618434 11618584 -144011536 + RSINE1 SINE B4 3 144 -21 2 673 504 86 0 0 chr4 11618641 11618711 -144011409 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 673 322 254 140 75 chr4 11618950 11619236 -144010884 + MLT1E2 LTR MaLR 205 589 -35 2 673 271 23 70 0 chr4 11619376 11619419 -144010701 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 673 547 296 0 0 chr4 11619422 11619554 -144010566 - RSINE1 SINE B4 -28 137 6 2 673 189 0 0 0 chr4 11619594 11619615 -144010505 + (T)n Simple_repeat Simple_repeat 1 21 0 2 673 291 260 69 113 chr4 11620236 11620248 -144009872 - B4 SINE B4 -61 231 171 2 673 672 146 0 62 chr4 11620248 11620387 -144009733 - B1_Mur1 SINE Alu -6 143 5 2 673 291 260 69 113 chr4 11620387 11620405 -144009715 - B4 SINE B4 -61 170 61 2 673 315 0 0 0 chr4 11621244 11621279 -144008841 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2 673 1212 54 0 0 chr4 11621285 11621432 -144008688 - B2_Mm2 SINE B2 -47 148 2 2 673 513 0 0 0 chr4 11622094 11622151 -144007969 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 2 673 543 16 0 0 chr4 11622152 11622216 -144007904 + (TCTCC)n Simple_repeat Simple_repeat 4 67 0 2 673 196 362 0 0 chr4 11622744 11622813 -144007307 + MIRm SINE MIR 206 274 -2 2 673 405 0 0 0 chr4 11622854 11622899 -144007221 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 673 4383 72 25 5 chr4 11623725 11624316 -144005804 - L1_Mus3 LINE L1 0 6638 6036 2 673 234 0 0 0 chr4 11624484 11624510 -144005610 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 673 357 282 110 8 chr4 11624789 11624907 -144005213 + MIR SINE MIR 30 159 -103 2 673 26 50 0 0 chr4 11625334 11625374 -144004746 + AT_rich Low_complexity Low_complexity 1 40 0 2 673 567 237 36 0 chr4 11625526 11625665 -144004455 + Lx9 LINE L1 7247 7390 -254 2 673 1389 45 0 0 chr4 11625996 11626260 -144003860 + (ATGGTG)n Simple_repeat Simple_repeat 1 264 0 2 673 209 83 28 0 chr4 11626650 11626686 -144003434 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2 673 180 0 0 0 chr4 11629269 11629289 -144000831 + (A)n Simple_repeat Simple_repeat 1 20 0 2 673 867 37 0 0 chr4 11629406 11629513 -144000607 + (TG)n Simple_repeat Simple_repeat 1 107 0 2 673 547 276 101 43 chr4 11629519 11629795 -144000325 - B4A SINE B4 0 292 1 2 673 32 0 0 0 chr4 11629819 11629851 -144000269 + AT_rich Low_complexity Low_complexity 1 32 0 2 673 25 0 0 0 chr4 11632253 11632278 -143997842 + AT_rich Low_complexity Low_complexity 1 25 0 2 673 708 248 14 0 chr4 11633471 11633612 -143996508 + ID_B1 SINE B4 82 224 0 2 673 219 341 55 76 chr4 11635800 11636173 -143993947 - L2c LINE L2 0 3375 3015 2 673 473 209 191 0 chr4 11637079 11637194 -143992926 + B1F2 SINE Alu 13 149 0 2 673 492 48 0 0 chr4 11637618 11637681 -143992439 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 673 387 0 0 0 chr4 11637748 11637791 -143992329 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 673 247 253 26 13 chr4 11637794 11637870 -143992250 + (CATA)n Simple_repeat Simple_repeat 3 79 0 2 673 668 291 109 15 chr4 11637907 11638172 -143991948 - B4 SINE B4 -2 290 1 2 673 22 0 0 0 chr4 11639943 11639965 -143990155 + AT_rich Low_complexity Low_complexity 1 22 0 2 673 21 0 0 0 chr4 11640183 11640204 -143989916 + AT_rich Low_complexity Low_complexity 1 21 0 2 673 22 0 0 0 chr4 11641596 11641618 -143988502 + AT_rich Low_complexity Low_complexity 1 22 0 2 673 21 0 0 0 chr4 11641864 11641885 -143988235 + AT_rich Low_complexity Low_complexity 1 21 0 2 673 324 0 0 0 chr4 11642260 11642296 -143987824 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 673 194 314 102 68 chr4 11642709 11642856 -143987264 + MIRb SINE MIR 42 193 -75 3 673 184 345 36 0 chr4 11643654 11643709 -143986411 - L2a LINE L2 -30 3396 3340 3 673 344 224 0 11 chr4 11644011 11644192 -143985928 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 3 673 317 301 121 12 chr4 11644314 11644479 -143985641 + MLT1C LTR MaLR 284 466 -1 3 673 2330 157 31 40 chr4 11644600 11645025 -143985095 + RMER10A LTR ERVL 1 424 -18 3 673 1093 28 0 68 chr4 11645025 11645215 -143984905 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 3 673 2330 157 31 40 chr4 11645215 11645233 -143984887 + RMER10A LTR ERVL 425 440 -2 3 673 701 177 6 33 chr4 11645250 11645313 -143984807 + polypyrimidine Low_complexity Low_complexity 120 176 0 3 673 1023 50 11 48 chr4 11645313 11645500 -143984620 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 673 701 177 6 33 chr4 11645500 11645617 -143984503 + polypyrimidine Low_complexity Low_complexity 2 119 0 3 673 229 296 19 0 chr4 11647959 11648013 -143982107 + MIRc SINE MIR 22 76 -192 3 673 234 62 0 0 chr4 11648318 11648350 -143981770 + (T)n Simple_repeat Simple_repeat 1 32 0 3 673 399 21 0 0 chr4 11648815 11648863 -143981257 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 673 689 281 124 21 chr4 11648873 11649106 -143981014 - B4A SINE B4 -33 259 3 3 673 302 182 18 0 chr4 11649864 11649919 -143980201 - ID4_ SINE ID -10 73 18 3 673 274 294 73 0 chr4 11650304 11650413 -143979707 - PB1D10 SINE Alu 0 117 1 3 673 267 189 90 0 chr4 11650421 11650483 -143979637 - L1M3 LINE L1 -278 5884 5817 3 673 5889 196 71 15 chr4 11650515 11651283 -143978837 - Lx9 LINE L1 -2 7642 6824 3 673 495 0 0 0 chr4 11651283 11651338 -143978782 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 673 1013 136 0 0 chr4 11651338 11651478 -143978642 - B1_Mus1 SINE Alu -4 144 5 3 673 5889 196 71 15 chr4 11651478 11651926 -143978194 - Lx9 LINE L1 -821 6823 6358 3 673 596 282 58 43 chr4 11651955 11652080 -143978040 - L1M3 LINE L1 -404 5779 5645 3 673 351 284 0 0 chr4 11652080 11652161 -143977959 - ID4_ SINE ID -2 81 1 3 673 596 282 58 43 chr4 11652161 11652380 -143977740 - L1M3 LINE L1 -539 5644 5430 3 673 4329 249 27 16 chr4 11652628 11653703 -143976417 - Lx7 LINE L1 -414 7282 6196 3 673 486 0 0 0 chr4 11653703 11653757 -143976363 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 673 2191 206 64 58 chr4 11653758 11654259 -143975861 + RLTR11A LTR ERVK 8 511 -17 3 673 432 0 0 0 chr4 11654285 11654333 -143975787 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 673 387 0 0 0 chr4 11654336 11654379 -143975741 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 673 776 245 71 61 chr4 11654381 11654707 -143975413 - Lx7 LINE L1 -1573 6123 5795 3 673 711 119 30 9 chr4 11654709 11654833 -143975287 - B1_Mur4 SINE Alu -5 145 7 3 673 282 239 103 52 chr4 11654751 11654848 -143975272 - MT2B LTR ERVL -348 253 152 3 673 1270 204 8 0 chr4 11654854 11655099 -143975021 - Lx7 LINE L1 -102 5778 5532 3 673 459 0 0 0 chr4 11657142 11657193 -143972927 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 673 246 32 0 0 chr4 11658230 11658261 -143971859 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 673 934 217 60 28 chr4 11658645 11658916 -143971204 + MTD LTR MaLR 13 306 -115 3 673 247 159 23 0 chr4 11658929 11658973 -143971147 + MTD LTR MaLR 360 404 -15 3 673 207 0 0 0 chr4 11659078 11659101 -143971019 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 3 673 244 316 21 21 chr4 11660096 11660190 -143969930 - MIRm SINE MIR -151 111 25 3 673 183 291 55 0 chr4 11660337 11660392 -143969728 - MIRc SINE MIR -123 145 88 3 673 1797 161 131 11 chr4 11662319 11662671 -143967449 - ORR1B1 LTR MaLR 0 394 1 3 673 370 364 52 21 chr4 11663175 11663366 -143966754 + MIR SINE MIR 5 201 -61 3 673 428 284 16 3 chr4 11664408 11664527 -143965593 - B4 SINE B4 -40 125 1 3 674 1324 98 64 5 chr4 11666549 11666753 -143963367 - MTB LTR MaLR 0 400 185 3 674 1006 76 8 0 chr4 11666768 11666900 -143963220 - B1_Mus1 SINE Alu 0 148 16 3 674 1356 155 12 37 chr4 11666887 11667128 -143962992 - MTB_Mm LTR MaLR -172 235 1 3 674 1382 40 11 0 chr4 11667167 11667343 -143962777 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 674 186 133 0 0 chr4 11667343 11667373 -143962747 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 674 432 290 46 46 chr4 11667373 11667503 -143962617 - RSINE1 SINE B4 -18 147 18 3 674 337 275 46 0 chr4 11668067 11668176 -143961944 - PB1D10 SINE Alu -3 114 1 3 674 1185 61 0 0 chr4 11668386 11668533 -143961587 + B1_Mm SINE Alu 1 147 0 3 674 559 300 125 26 chr4 11668648 11668912 -143961208 - B4A SINE B4 0 292 3 3 674 570 29 0 0 chr4 11669045 11669113 -143961007 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 674 327 104 0 0 chr4 11669542 11669590 -143960530 + (T)n Simple_repeat Simple_repeat 1 48 0 3 674 1123 70 0 27 chr4 11669590 11669738 -143960382 - B1_Mus1 SINE Alu 0 148 5 3 674 329 262 0 0 chr4 11669990 11670070 -143960050 - B1F SINE Alu -52 97 18 3 674 1507 278 87 7 chr4 11670169 11670712 -143959408 - L1MA5 LINE L1 -108 6192 5607 3 674 279 0 0 0 chr4 11671439 11671470 -143958650 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 674 3156 158 7 31 chr4 11671489 11672030 -143958090 - RMER1B Other Other -66 1000 473 3 674 749 188 43 6 chr4 11672095 11672256 -143957864 - B3 SINE B2 -1 215 49 3 674 2595 64 16 3 chr4 11672270 11672633 -143957487 + MTA_Mm LTR MaLR 1 368 -28 3 674 832 234 21 11 chr4 11672967 11673155 -143956965 + B3A SINE B2 4 190 -5 3 674 993 81 66 0 chr4 11673697 11673833 -143956287 + B1_Mus2 SINE Alu 1 145 -2 3 674 614 251 58 21 chr4 11674066 11674257 -143955863 - B3A SINE B2 0 198 1 3 674 1704 171 130 20 chr4 11674311 11674469 -143955651 + ORR1C2 LTR MaLR 1 159 -225 3 674 492 18 0 0 chr4 11674469 11674526 -143955594 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 674 1704 171 130 20 chr4 11674526 11674713 -143955407 + ORR1C2 LTR MaLR 160 383 -1 3 674 32489 87 8 3 chr4 11675395 11677292 -143952828 - L1_Mus3 LINE L1 -3 6635 4733 3 674 216 86 0 0 chr4 11677292 11677327 -143952793 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 674 32489 101 13 7 chr4 11677327 11681684 -143948436 - L1_Mus3 LINE L1 -1151 4732 339 3 674 3775 263 110 14 chr4 11681942 11683081 -143947039 - Lx8 LINE L1 -43 7430 6183 3 674 520 307 43 32 chr4 11683153 11683338 -143946782 - B4 SINE B4 -68 224 38 3 674 462 36 0 0 chr4 11684746 11684802 -143945318 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 3 674 216 0 0 0 chr4 11686660 11686684 -143943436 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 3 674 203 0 37 0 chr4 11686786 11686813 -143943307 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 674 23 33 0 0 chr4 11687422 11687452 -143942668 + AT_rich Low_complexity Low_complexity 1 30 0 3 674 216 0 0 0 chr4 11688134 11688158 -143941962 + (T)n Simple_repeat Simple_repeat 1 24 0 3 674 924 236 256 3 chr4 11688605 11688898 -143941222 - ORR1D2 LTR MaLR -3 367 1 3 674 202 211 0 0 chr4 11689293 11689331 -143940789 + CT-rich Low_complexity Low_complexity 3 40 0 3 674 799 76 69 0 chr4 11691367 11691498 -143938622 - L1_Mus3 LINE L1 -2 6636 6497 3 674 209 148 55 18 chr4 11691851 11691906 -143938214 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 3 674 231 322 51 0 chr4 11692450 11692568 -143937552 - MER2 DNA MER2_type -32 313 190 3 674 243 320 39 0 chr4 11692942 11693045 -143937075 - MER2 DNA MER2_type -152 193 87 3 674 393 22 0 0 chr4 11693065 11693111 -143937009 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 674 225 0 0 0 chr4 11693124 11693149 -143936971 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 674 25 51 0 0 chr4 11693309 11693348 -143936772 + AT_rich Low_complexity Low_complexity 1 39 0 3 674 201 324 54 0 chr4 11693615 11693689 -143936431 + MIRc SINE MIR 65 142 -126 3 674 21 0 0 0 chr4 11694162 11694183 -143935937 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 244 275 32 42 chr4 11696987 11697082 -143933038 - MLT1L LTR MaLR -6 604 511 3 674 1194 216 62 32 chr4 11699010 11699349 -143930771 - ORR1E LTR MaLR -10 349 1 3 674 1361 152 9 5 chr4 11699576 11699800 -143930320 + URR1B DNA MER1_type 1 225 0 3 674 888 284 0 29 chr4 11700014 11700253 -143929867 + B4A SINE B4 1 232 -60 3 674 571 312 57 33 chr4 11700257 11700502 -143929618 + B4A SINE B4 5 255 -37 3 674 23 0 0 0 chr4 11701325 11701348 -143928772 + AT_rich Low_complexity Low_complexity 1 23 0 3 674 1678 133 3 0 chr4 11701373 11701666 -143928454 - RLTR11B LTR ERVK -4 449 156 3 674 1119 187 76 45 chr4 11701775 11702066 -143928054 - Lx7 LINE L1 -76 7620 7321 3 674 2606 74 0 0 chr4 11702057 11702396 -143927724 - L1_Mm LINE L1 -2339 3544 3206 3 674 318 286 89 49 chr4 11702394 11702640 -143927480 - L1M4 LINE L1 -3484 3522 3267 3 674 371 260 146 0 chr4 11702653 11702776 -143927344 - B1F SINE Alu -8 141 1 3 674 1681 295 176 60 chr4 11702791 11703261 -143926859 - L1M4 LINE L1 -4684 2324 1746 3 674 2750 48 6 0 chr4 11703261 11703596 -143926524 - L1Md_A LINE L1 0 6582 6246 3 674 1681 299 129 27 chr4 11703596 11704456 -143925664 - L1M4 LINE L1 -5090 1814 860 3 674 992 212 168 60 chr4 11704512 11704899 -143925221 - Lx8 LINE L1 -2 7471 7043 3 674 710 11 11 0 chr4 11704918 11705005 -143925115 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 674 473 268 56 16 chr4 11705066 11705191 -143924929 - B1F SINE Alu -15 134 5 3 674 3999 82 14 20 chr4 11706402 11706961 -143923159 - L1Md_F2 LINE L1 0 6582 6027 3 674 528 16 0 0 chr4 11707563 11707624 -143922496 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 3 674 418 304 0 0 chr4 11708614 11708716 -143921404 - MER20 DNA MER1_type -64 155 54 3 674 273 333 53 26 chr4 11708721 11708835 -143921285 + B3 SINE B2 5 121 -95 3 674 221 75 25 0 chr4 11708836 11708876 -143921244 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 3 674 296 333 31 8 chr4 11709307 11709437 -143920683 - MER63B DNA AcHobo -1 435 303 3 674 1002 235 93 28 chr4 11709663 11710062 -143920058 - Charlie1a DNA MER1_type -202 1253 829 3 674 363 78 0 0 chr4 11710856 11710907 -143919213 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 674 1184 120 16 5 chr4 11711209 11711402 -143918718 + URR1A DNA MER1_type 30 224 -2 4 674 22 35 0 0 chr4 11711968 11711997 -143918123 + AT_rich Low_complexity Low_complexity 1 29 0 4 674 376 227 41 10 chr4 11713613 11713711 -143916409 - MLT1F2 LTR MaLR 0 560 460 4 674 394 326 116 0 chr4 11713726 11713916 -143916204 - MLT1F2 LTR MaLR -344 216 5 4 674 36045 72 8 4 chr4 11714048 11720154 -143909966 - L1Md_F2 LINE L1 -9 6573 446 4 674 387 92 0 0 chr4 11720469 11720534 -143909586 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 4 674 275 149 14 0 chr4 11720540 11720614 -143909506 + GA-rich Low_complexity Low_complexity 2 76 0 4 674 342 67 0 0 chr4 11720917 11720962 -143909158 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 674 302 299 62 16 chr4 11721450 11721579 -143908541 + MLT1B LTR MaLR 4 138 -329 4 674 379 224 0 94 chr4 11721586 11721778 -143908342 + (TAGGG)n Simple_repeat Simple_repeat 3 176 0 4 674 815 260 13 44 chr4 11721849 11722078 -143908042 + B4 SINE B4 2 223 -69 4 674 241 103 17 33 chr4 11722103 11722163 -143907957 + (CAA)n Simple_repeat Simple_repeat 2 60 0 4 674 308 355 29 7 chr4 11722346 11722482 -143907638 + MLT1B LTR MaLR 241 379 -11 4 674 226 332 153 8 chr4 11723143 11723404 -143906716 - LTR16B2 LTR ERVL -163 299 1 4 674 1088 86 0 0 chr4 11726908 11727047 -143903073 + B1_Mus1 SINE Alu 1 139 -9 4 674 297 0 0 0 chr4 11727047 11727080 -143903040 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 674 308 234 156 0 chr4 11727185 11727262 -143902858 - B3A SINE B2 -109 89 1 4 674 1119 266 102 9 chr4 11727985 11728300 -143901820 + ORR1E LTR MaLR 9 352 -7 4 674 249 322 0 22 chr4 11728797 11728886 -143901234 + L2a LINE L2 3340 3426 0 4 674 265 197 33 0 chr4 11729242 11729303 -143900817 - LTR82B Low_complexity ERVL -630 200 138 4 674 416 130 19 29 chr4 11729346 11729449 -143900671 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 4 674 24 0 0 0 chr4 11729449 11729473 -143900647 + AT_rich Low_complexity Low_complexity 1 24 0 4 674 776 165 193 12 chr4 11729691 11729857 -143900263 - ORR1B1 LTR MaLR -198 196 1 4 674 459 0 0 0 chr4 11729923 11729974 -143900146 + (CAA)n Simple_repeat Simple_repeat 3 53 0 4 674 572 290 57 19 chr4 11729994 11730152 -143899968 + RSINE1 SINE B4 2 165 0 4 674 228 67 0 0 chr4 11730217 11730247 -143899873 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 674 210 254 85 0 chr4 11731886 11731945 -143898175 - MIRc SINE MIR -158 110 47 4 674 252 0 0 0 chr4 11733447 11733475 -143896645 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 674 1382 157 9 0 chr4 11734178 11734401 -143895719 - URR1B DNA MER1_type 0 225 1 4 674 588 218 0 0 chr4 11734903 11735082 -143895038 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 674 378 61 0 0 chr4 11735104 11735153 -143894967 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 674 364 314 80 63 chr4 11735676 11735914 -143894206 + Charlie19a DNA Charlie 91 332 -54 4 674 197 365 54 0 chr4 11736557 11736631 -143893489 - MIR SINE MIR -107 155 78 4 674 195 257 39 39 chr4 11736841 11736918 -143893202 + MIRc SINE MIR 69 145 -123 4 674 232 250 0 0 chr4 11736998 11737050 -143893070 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 674 621 276 51 0 chr4 11737052 11737208 -143892912 - RSINE1 SINE B4 0 165 2 4 674 330 223 11 44 chr4 11737691 11737795 -143892325 + L1_Mur2 LINE L1 4011 4121 -1765 4 674 13259 93 16 40 chr4 11737793 11740644 -143889476 + L1VL2 LINE L1 108 2877 -738 4 674 1011 36 15 0 chr4 11740644 11740781 -143889339 + B1_Mus1 SINE Alu 10 148 0 4 674 739 68 0 0 chr4 11740799 11740902 -143889218 + L1VL2 LINE L1 2882 2984 -631 4 674 21 0 0 0 chr4 11741465 11741486 -143888634 + AT_rich Low_complexity Low_complexity 1 21 0 4 674 331 179 45 0 chr4 11743052 11743119 -143887001 - PB1D7 SINE Alu -5 115 46 4 674 486 0 0 0 chr4 11745075 11745129 -143884991 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 674 366 23 0 0 chr4 11745129 11745172 -143884948 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 674 546 89 0 0 chr4 11747081 11747171 -143882949 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 674 351 0 0 0 chr4 11747171 11747210 -143882910 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 674 336 295 95 0 chr4 11747227 11747332 -143882788 - B4A SINE B4 0 292 178 4 674 217 218 102 31 chr4 11747344 11747470 -143882650 - MIRb SINE MIR -84 184 36 4 674 788 304 78 15 chr4 11748289 11748559 -143881561 + B4 SINE B4 2 288 -4 4 674 288 197 19 15 chr4 11749861 11749938 -143880182 + MTEb LTR MaLR 301 379 0 4 674 307 247 74 0 chr4 11751719 11751800 -143878320 + ID_B1 SINE B4 137 223 -1 4 674 225 0 0 0 chr4 11751943 11751968 -143878152 + (T)n Simple_repeat Simple_repeat 1 25 0 4 674 283 273 17 83 chr4 11751987 11752107 -143878013 - Lx8 LINE L1 -219 7254 7143 4 674 327 257 167 56 chr4 11752520 11752633 -143877487 + L1MEc LINE L1 1499 1643 -4757 4 674 3017 32 0 0 chr4 11752633 11752979 -143877141 - ORR1A0 LTR MaLR 0 346 1 4 674 327 257 167 56 chr4 11752979 11753170 -143876950 + L1MEc LINE L1 1644 1837 -4563 4 674 1691 262 53 2 chr4 11753170 11753660 -143876460 + MLT2B1 LTR ERVL 1 515 -5 4 674 604 321 117 13 chr4 11754380 11755047 -143875073 + L1M2 LINE L1 2386 3189 -2954 4 674 276 315 27 46 chr4 11755602 11755762 -143874358 - MIR SINE MIR -8 260 110 4 674 488 312 69 11 chr4 11758218 11758406 -143871714 - MLT1J LTR MaLR -69 443 245 4 674 18021 65 19 10 chr4 11758524 11761010 -143869110 - MusHAL1 LINE L1 -2 2710 203 4 674 1397 144 18 0 chr4 11761060 11761282 -143868838 - URR1A DNA MER1_type 0 226 1 4 674 926 218 277 12 chr4 11762047 11762372 -143867748 + MER57D LTR ERV1 1 411 0 4 674 225 0 0 0 chr4 11762496 11762521 -143867599 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 674 369 0 0 0 chr4 11762521 11762561 -143867559 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 674 1181 102 11 0 chr4 11763041 11763217 -143866903 + L1_Mus3 LINE L1 6459 6636 -2 4 674 5686 57 0 0 chr4 11763278 11763995 -143866125 - L1_Mm LINE L1 -1946 3937 3221 4 674 11465 52 4 0 chr4 11763994 11765397 -143864723 + L1Md_F2 LINE L1 4178 5586 -297 4 674 8385 41 0 8 chr4 11765397 11766399 -143863721 + L1Md_F2 LINE L1 5587 6580 -2 4 674 506 231 9 0 chr4 11767483 11767591 -143862529 + RSINE1 SINE B4 4 112 -53 4 674 2081 110 91 60 chr4 11767649 11768035 -143862085 + RMER10B LTR ERVL 1 398 0 4 674 615 291 145 94 chr4 11768759 11769291 -143860829 + RLTR18 LTR ERVK 33 591 -25 4 674 3357 93 36 63 chr4 11769887 11770412 -143859708 + RLTR1B LTR ERV1 1 511 -1 4 674 683 118 55 0 chr4 11770413 11770523 -143859597 + RLTR1B-int LTR ERV1 1 116 -3183 4 674 311 250 31 0 chr4 11770542 11770638 -143859482 + RLTR1B-int LTR ERV1 202 300 -7256 4 674 680 223 52 65 chr4 11770666 11770896 -143859224 + RLTR1B-int LTR ERV1 382 608 -6948 4 674 552 52 0 0 chr4 11770897 11770974 -143859146 + LTRIS2 LTR ERV1 249 325 -239 4 674 769 65 9 0 chr4 11770973 11771080 -143859040 + LTRIS2 LTR ERV1 457 564 0 4 674 2219 130 66 87 chr4 11771324 11771763 -143858357 - RLTR23 LTR ERV1 0 430 1 4 674 194 0 39 0 chr4 11772210 11772236 -143857884 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 4 674 238 263 196 29 chr4 11772486 11772588 -143857532 - RSINE1 SINE B4 -4 161 43 4 674 455 252 78 0 chr4 11772995 11773148 -143856972 - MER5A DNA MER1_type -3 186 22 4 674 314 328 70 48 chr4 11773393 11773579 -143856541 - RMER30 DNA MER1_type -8 194 5 4 674 869 133 14 22 chr4 11773679 11773817 -143856303 + B1_Mur4 SINE Alu 5 141 -9 4 674 461 175 30 20 chr4 11774819 11774918 -143855202 + RLTR23 LTR ERV1 331 430 0 4 674 462 18 0 0 chr4 11775305 11775360 -143854760 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 674 412 219 0 0 chr4 11776133 11776215 -143853905 + ID4_ SINE ID 2 83 0 4 674 1442 199 104 51 chr4 11776691 11776884 -143853236 - ORR1D1 LTR MaLR 0 374 196 4 674 735 12 0 0 chr4 11776884 11776968 -143853152 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 674 1442 199 104 51 chr4 11776968 11777129 -143852991 - ORR1D1 LTR MaLR -179 195 1 4 674 367 238 0 0 chr4 11777336 11777416 -143852704 - ID4_ SINE ID -3 80 1 4 674 21 57 0 0 chr4 11777891 11777926 -143852194 + AT_rich Low_complexity Low_complexity 1 35 0 4 674 375 274 0 0 chr4 11777966 11778061 -143852059 - B3A SINE B2 -103 95 1 4 674 216 0 0 0 chr4 11778912 11778936 -143851184 + (CTG)n Simple_repeat Simple_repeat 1 24 0 4 674 487 244 39 8 chr4 11779508 11779657 -143850463 - MER58B DNA MER1_type -3 338 182 4 674 873 105 83 0 chr4 11779669 11779802 -143850318 + B1_Mus1 SINE Alu 5 148 0 4 674 672 93 0 0 chr4 11780655 11780752 -143849368 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 674 562 267 0 56 chr4 11780752 11780895 -143849225 - B1_Mur1 SINE Alu -12 137 3 4 674 256 293 99 61 chr4 11781988 11782119 -143848001 + MIR SINE MIR 58 193 -69 4 674 190 0 32 32 chr4 11783255 11783265 -143846855 + (TC)n Simple_repeat Simple_repeat 1 11 0 4 674 1371 62 0 0 chr4 11783265 11783443 -143846677 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 4 674 190 0 32 32 chr4 11783443 11783463 -143846657 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 674 708 249 17 39 chr4 11783463 11783643 -143846477 - B3A SINE B2 -22 176 1 4 674 411 214 266 82 chr4 11783650 11783955 -143846165 + Lx7 LINE L1 7328 7688 -8 4 674 21 36 0 0 chr4 11784076 11784104 -143846016 + AT_rich Low_complexity Low_complexity 1 28 0 4 674 342 206 0 0 chr4 11784840 11784903 -143845217 + ID4 SINE ID 1 63 -20 4 674 856 298 112 15 chr4 11784903 11785419 -143844701 + L1MB2 LINE L1 5604 6169 -2 4 674 652 280 35 9 chr4 11787043 11787270 -143842850 + RMER15 LTR ERVL 300 532 -43 4 674 342 0 0 0 chr4 11788080 11788118 -143842002 + (TTAG)n Simple_repeat Simple_repeat 4 41 0 5 674 237 211 113 0 chr4 11788127 11788198 -143841922 - B1_Mur4 SINE Alu -5 145 67 5 674 474 265 8 8 chr4 11788190 11788308 -143841812 - B1F SINE Alu -18 131 14 5 674 340 316 126 63 chr4 11789029 11789410 -143840710 + MLT1A1 LTR MaLR 1 405 -3 5 674 408 219 3 7 chr4 11789502 11789613 -143840507 - ID4_ SINE ID -29 123 14 5 674 282 313 10 20 chr4 11789636 11789737 -143840383 - PB1D10 SINE Alu -5 112 13 5 674 2472 77 12 6 chr4 11790190 11790515 -143839605 + ORR1A2 LTR MaLR 1 327 0 5 674 246 105 0 0 chr4 11791622 11791660 -143838460 + (GGA)n Simple_repeat Simple_repeat 3 40 0 5 674 297 257 0 0 chr4 11792405 11792475 -143837645 - ID4 SINE ID -5 78 9 5 674 306 125 0 0 chr4 11792501 11792549 -143837571 + (TTA)n Simple_repeat Simple_repeat 3 50 0 5 674 423 0 0 0 chr4 11793592 11793639 -143836481 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 674 250 222 111 0 chr4 11794585 11794648 -143835472 - ID2 SINE ID -13 70 1 5 674 1097 254 122 28 chr4 11794967 11795565 -143834555 + L1MC1 LINE L1 5115 5766 -2229 5 674 1123 282 143 18 chr4 11795565 11796060 -143834060 - MER89 LTR ERV1 0 559 3 5 674 1171 224 87 9 chr4 11796066 11796400 -143833720 + L1MC1 LINE L1 5771 6130 -203 5 84 432 191 12 0 chr4 11796401 11796485 -143833635 + MT2A LTR ERVL 1 85 -448 5 84 465 203 228 0 chr4 11796478 11796601 -143833519 + MT2A LTR ERVL 383 533 0 5 675 445 165 47 0 chr4 11796679 11796764 -143833356 + L1MC1 LINE L1 6245 6333 0 5 675 786 278 65 27 chr4 11800135 11800397 -143829723 + MER2 DNA MER2_type 43 314 -31 5 675 1609 184 84 6 chr4 11801367 11801711 -143828409 - RLTR14 LTR ERV1 0 382 12 5 675 364 309 14 35 chr4 11801718 11801862 -143828258 - RSINE1 SINE B4 -22 143 3 5 675 2368 219 77 14 chr4 11803739 11804314 -143825806 - RMER19C LTR ERVK 0 611 1 5 675 2993 109 23 25 chr4 11806535 11806966 -143823154 + RLTR23 LTR ERV1 1 430 0 5 675 720 232 17 11 chr4 11807046 11807225 -143822895 - Tigger5 DNA MER2_type -91 2315 2136 5 675 5683 117 58 11 chr4 11807227 11808142 -143821978 + RMER17B LTR ERVK 1 958 0 5 675 1162 198 51 12 chr4 11808502 11808757 -143821363 + RMER20B LTR ERVK 1 265 -362 5 675 306 0 0 0 chr4 11808775 11808809 -143821311 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 675 248 230 133 33 chr4 11809248 11809338 -143820782 + MIRm SINE MIR 27 125 -151 5 675 216 0 0 0 chr4 11810450 11810474 -143819646 + (A)n Simple_repeat Simple_repeat 1 24 0 5 675 199 238 0 0 chr4 11810870 11810912 -143819208 - MIRc SINE MIR -141 127 86 5 675 205 243 83 28 chr4 11811530 11811602 -143818518 + MIRb SINE MIR 115 190 -78 5 675 441 0 0 0 chr4 11811664 11811713 -143818407 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 675 217 109 0 42 chr4 11812357 11812405 -143817715 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 675 430 160 40 23 chr4 11812452 11812625 -143817495 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 675 270 0 0 0 chr4 11812670 11812700 -143817420 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 5 675 313 360 61 0 chr4 11813161 11813325 -143816795 - MER2B DNA MER2_type -1 335 162 5 675 1140 186 23 0 chr4 11813344 11813559 -143816561 - URR1A DNA MER1_type 0 226 7 5 675 1045 306 48 17 chr4 11813961 11814480 -143815640 + L1MB5 LINE L1 5625 6159 -15 5 675 336 266 56 28 chr4 11814756 11814899 -143815221 - L2a LINE L2 -18 3408 3262 5 675 205 395 42 0 chr4 11815846 11815965 -143814155 - MIRb SINE MIR -87 181 58 5 675 360 59 0 0 chr4 11816985 11817036 -143813084 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 675 531 0 0 0 chr4 11817036 11817094 -143813026 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 675 250 200 183 0 chr4 11818302 11818362 -143811758 - ID4 SINE ID -11 72 2 5 675 963 243 15 3 chr4 11818881 11819100 -143811020 + B3 SINE B2 1 216 0 5 675 2634 253 131 18 chr4 11819433 11820211 -143809909 - Lx8 LINE L1 -352 7121 6256 5 675 246 289 0 2 chr4 11820781 11820847 -143809273 - MIR SINE MIR -126 82 18 5 675 1700 120 14 21 chr4 11821387 11821676 -143808444 - Lx4A LINE L1 -2 7056 6770 5 675 233 57 29 0 chr4 11821875 11821910 -143808210 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 675 258 105 0 0 chr4 11822276 11822314 -143807806 + (A)n Simple_repeat Simple_repeat 1 38 0 5 675 2443 95 3 0 chr4 11824291 11824617 -143805503 - ORR1A2 LTR MaLR 0 327 1 5 675 1338 161 4 30 chr4 11824651 11824882 -143805238 + URR1B DNA MER1_type 1 225 0 5 675 1492 178 7 17 chr4 11825088 11825380 -143804740 - MTC LTR MaLR 0 421 133 5 675 939 221 34 92 chr4 11825380 11825425 -143804695 - MT2B LTR ERVL 0 601 558 5 675 426 39 0 0 chr4 11825425 11825477 -143804643 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 5 675 939 239 105 69 chr4 11825477 11825962 -143804158 - MT2B LTR ERVL -44 557 1 5 675 277 115 0 19 chr4 11825964 11826017 -143804103 - MTC LTR MaLR -286 135 84 5 675 587 139 26 0 chr4 11826020 11826135 -143803985 - MTC LTR MaLR -303 118 1 5 675 648 211 76 94 chr4 11826135 11826412 -143803708 - MTC-int LTR MaLR 0 1258 987 5 675 1062 155 10 15 chr4 11826399 11826602 -143803518 - MTC-int LTR MaLR -1048 210 9 5 675 1927 185 69 3 chr4 11826598 11826977 -143803143 - MTC LTR MaLR -12 409 6 5 675 624 286 141 27 chr4 11827920 11828268 -143801852 + L1MD2 LINE L1 5217 5603 -639 5 675 198 0 0 0 chr4 11828520 11828542 -143801578 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 675 239 346 70 37 chr4 11828649 11828949 -143801171 + L1MD2 LINE L1 6032 6341 -18 5 675 26 0 0 0 chr4 11829232 11829258 -143800862 + AT_rich Low_complexity Low_complexity 1 26 0 5 675 859 250 6 0 chr4 11829380 11829552 -143800568 - ID_B1 SINE B4 -31 193 21 5 675 786 176 0 0 chr4 11830961 11831109 -143799011 + CT-rich Low_complexity Low_complexity 2 149 0 5 675 748 281 10 30 chr4 11831117 11831319 -143798801 - B3A SINE B2 0 198 1 5 675 352 301 60 38 chr4 11832453 11832636 -143797484 - MIR SINE MIR -49 213 27 5 675 556 14 27 0 chr4 11833465 11833538 -143796582 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 675 298 330 64 9 chr4 11833975 11834085 -143796035 + PB1D10 SINE Alu 1 116 -1 5 675 405 0 0 0 chr4 11834085 11834130 -143795990 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 5 675 214 206 99 42 chr4 11834133 11834204 -143795916 + PB1D10 SINE Alu 41 115 -2 5 675 1997 116 15 44 chr4 11834243 11834613 -143795507 + ORR1A4 LTR MaLR 1 390 -4 5 675 27218 82 5 3 chr4 11835705 11840134 -143789986 - L1_Mus1 LINE L1 0 6567 2129 5 675 269 213 110 23 chr4 11840691 11840864 -143789256 - RMER17D LTR ERVK -471 418 231 5 675 880 332 12 4 chr4 11840852 11841097 -143789023 - Tigger7 DNA MER2_type -2236 255 9 5 675 200 133 0 0 chr4 11841156 11841186 -143788934 - MIR SINE MIR -122 140 111 5 675 282 378 41 27 chr4 11843169 11843316 -143786804 + MIRb SINE MIR 5 153 -115 5 675 704 144 0 0 chr4 11844037 11844141 -143785979 - MTC LTR MaLR -317 104 1 5 675 556 286 38 54 chr4 11844546 11844731 -143785389 - B3A SINE B2 -14 184 3 5 675 486 0 0 0 chr4 11844741 11844795 -143785325 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 5 675 796 257 23 41 chr4 11844808 11845027 -143785093 - ID_B1 SINE B4 -9 215 1 5 675 236 114 0 43 chr4 11845542 11845588 -143784532 + GA-rich Low_complexity Low_complexity 4 47 0 5 675 217 274 0 0 chr4 11845998 11846049 -143784071 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 675 446 49 0 16 chr4 11846049 11846111 -143784009 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 675 351 0 0 0 chr4 11847065 11847104 -143783016 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 675 306 0 0 0 chr4 11849028 11849062 -143781058 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 675 722 284 114 47 chr4 11849111 11849558 -143780562 + Lx8 LINE L1 6874 7350 -123 5 675 382 228 13 0 chr4 11850617 11850696 -143779424 - ID4 SINE ID -3 80 1 5 675 228 241 68 57 chr4 11852400 11852488 -143777632 + MamGypLTR2b LTR Gypsy 782 870 -52 5 675 831 275 19 0 chr4 11853382 11853593 -143776527 + ID_B1 SINE B4 1 215 -9 5 675 291 114 0 0 chr4 11853606 11853650 -143776470 + (CCA)n Simple_repeat Simple_repeat 1 44 0 5 675 207 0 0 0 chr4 11853648 11853671 -143776449 + (CAA)n Simple_repeat Simple_repeat 1 23 0 5 675 737 271 166 21 chr4 11854040 11854471 -143775649 - MLT1D LTR MaLR -8 497 4 5 675 231 283 116 70 chr4 11854644 11854773 -143775347 + L1MEg LINE L1 556 690 -5806 5 675 2158 135 12 3 chr4 11854778 11855113 -143775007 + ORR1A1 LTR MaLR 1 338 -8 5 675 623 259 14 7 chr4 11855238 11855382 -143774738 + Tigger7 DNA MER2_type 192 336 -2155 5 675 236 286 0 0 chr4 11855387 11855443 -143774677 + Tigger7 DNA MER2_type 960 1015 -1476 5 675 1229 279 48 16 chr4 11855577 11855890 -143774230 + 7SK RNA RNA 8 330 -1 5 675 430 161 24 47 chr4 11856207 11856292 -143773828 + PB1D10 SINE Alu 27 109 -8 5 675 376 308 60 14 chr4 11856420 11856637 -143773483 + L1MEg LINE L1 1264 1490 -5006 5 675 184 346 77 36 chr4 11856961 11857129 -143772991 - L2 LINE L2 -493 2926 2752 5 675 245 235 162 10 chr4 11858781 11858880 -143771240 + L1MEg LINE L1 4918 5031 -1369 5 675 264 170 19 19 chr4 11858928 11858982 -143771138 - RLTR28B LTR ERVL -22 502 449 5 675 270 81 0 0 chr4 11859045 11859082 -143771038 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 5 675 719 220 217 12 chr4 11859095 11859348 -143770772 - RLTR28B LTR ERVL -176 305 1 5 675 469 315 94 23 chr4 11859353 11859737 -143770383 + L1MEg LINE L1 5048 5458 -942 5 675 2374 109 19 0 chr4 11860391 11860711 -143769409 + ORR1A3 LTR MaLR 1 326 0 5 675 323 301 41 113 chr4 11862364 11862423 -143767697 - LTR37B LTR ERV1 -75 393 341 5 675 577 283 14 20 chr4 11862423 11862571 -143767549 + B1F1 SINE Alu 2 148 -1 5 675 323 301 41 113 chr4 11862571 11862777 -143767343 - LTR37B LTR ERV1 -128 340 147 5 675 471 345 86 31 chr4 11862890 11863147 -143766973 + MLT1J LTR MaLR 238 508 -4 5 675 244 197 83 83 chr4 11863808 11863831 -143766289 + Lx7 LINE L1 7221 7248 -448 5 675 207 0 0 0 chr4 11863831 11863854 -143766266 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 675 330 26 0 0 chr4 11863857 11863896 -143766224 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 675 244 197 83 83 chr4 11863896 11863940 -143766180 + Lx7 LINE L1 7249 7292 -404 5 675 686 131 32 139 chr4 11863940 11864063 -143766057 + ORR1C2 LTR MaLR 14 139 -245 5 675 537 200 0 16 chr4 11864063 11864185 -143765935 + Lx7 LINE L1 7558 7677 -19 5 675 270 0 0 0 chr4 11865133 11865163 -143764957 + (A)n Simple_repeat Simple_repeat 1 30 0 6 675 2578 152 143 15 chr4 11865506 11865973 -143764147 + RLTR24 LTR ERV1 1 527 -2 6 675 1277 49 0 0 chr4 11866403 11866546 -143763574 + B1_Mus2 SINE Alu 4 146 -1 6 675 428 145 0 95 chr4 11866584 11866668 -143763452 - B4A SINE B4 0 292 217 6 675 524 317 83 45 chr4 11866745 11867009 -143763111 - B4A SINE B4 -18 274 1 6 675 877 288 49 13 chr4 11867009 11867231 -143762889 - B4A SINE B4 -62 230 1 6 675 1795 185 62 46 chr4 11867650 11868018 -143762102 + ORR1D1 LTR MaLR 1 374 0 6 675 427 274 201 14 chr4 11868597 11868780 -143761340 - ORR1E LTR MaLR -162 208 1 6 675 1645 149 40 48 chr4 11868999 11869437 -143760683 + RMER17C LTR ERVK 15 441 -517 6 675 988 261 194 10 chr4 11869695 11870086 -143760034 + Lx8 LINE L1 7008 7470 -3 6 675 254 120 152 51 chr4 11870299 11870378 -143759742 - L1MB8 LINE L1 -45 6993 6907 6 675 231 133 0 0 chr4 11870392 11870437 -143759683 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 675 593 308 58 61 chr4 11870454 11870800 -143759320 - L1MB8 LINE L1 -154 6884 6540 6 675 691 273 138 25 chr4 11870800 11871058 -143759062 + B4A SINE B4 1 283 -9 6 675 4832 10 0 2 chr4 11871128 11871638 -143758482 + L1Md_T LINE L1 6074 6582 0 6 675 583 289 89 40 chr4 11871652 11872001 -143758119 - L1MB8 LINE L1 -552 6492 6127 6 675 297 89 0 0 chr4 11872038 11872083 -143758037 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 6 675 370 287 62 98 chr4 11872232 11872506 -143757614 - L1MB8 LINE L1 -1030 5976 5713 6 675 1779 188 111 3 chr4 11872723 11873076 -143757044 + ORR1B1 LTR MaLR 4 394 0 6 675 663 243 139 34 chr4 11873644 11873938 -143756182 - L1MB8 LINE L1 -5374 1960 1636 6 675 216 0 0 0 chr4 11874051 11874075 -143756045 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 675 564 140 0 123 chr4 11874075 11874181 -143755939 - B1_Mus2 SINE Alu -13 134 42 6 675 278 194 60 69 chr4 11874109 11874225 -143755895 - RLTR25B LTR ERVK -517 511 397 6 675 244 0 0 158 chr4 11874226 11874346 -143755774 + (CTCTG)n Simple_repeat Simple_repeat 5 105 0 6 675 373 109 0 35 chr4 11874347 11874404 -143755716 - B1_Mur4 SINE Alu -90 60 6 6 675 310 348 66 7 chr4 11874438 11874574 -143755546 + B1_Mur1 SINE Alu 1 144 -5 6 675 858 283 61 21 chr4 11874577 11874906 -143755214 - L1MB8 LINE L1 -5792 1542 1201 6 675 417 296 66 75 chr4 11874948 11875189 -143754931 - L1MB8 LINE L1 -7093 241 3 6 675 1284 91 0 0 chr4 11875848 11876092 -143754028 + (TATG)n Simple_repeat Simple_repeat 1 244 0 6 675 459 0 0 0 chr4 11876102 11876153 -143753967 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 6 675 893 185 0 7 chr4 11876158 11876305 -143753815 - B1_Mur3 SINE Alu -2 147 2 6 675 225 309 116 23 chr4 11876554 11876683 -143753437 - MIRc SINE MIR -27 241 101 6 675 786 230 75 5 chr4 11876883 11876905 -143753215 - B3 SINE B2 -15 201 179 6 675 419 52 17 0 chr4 11876905 11876963 -143753157 + (TATG)n Simple_repeat Simple_repeat 4 62 0 6 675 786 230 75 5 chr4 11876963 11877128 -143752992 - B3 SINE B2 -38 178 2 6 675 494 271 39 0 chr4 11877291 11877420 -143752700 + B1F1 SINE Alu 5 138 -11 6 675 203 204 40 20 chr4 11877421 11877471 -143752649 + GA-rich Low_complexity Low_complexity 4 54 0 6 675 550 301 99 17 chr4 11878542 11878944 -143751176 + L1ME2 LINE L1 5440 5882 -282 6 675 222 62 0 0 chr4 11879406 11879438 -143750682 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 675 623 283 74 34 chr4 11879447 11879774 -143750346 + L1MA4A LINE L1 5447 5756 -91 6 675 496 289 109 0 chr4 11879774 11879902 -143750218 + ID_B1 SINE B4 82 223 -1 6 675 282 273 58 10 chr4 11879902 11880035 -143750085 + L1MA4A LINE L1 5788 5924 -1549 6 675 331 186 53 33 chr4 11880168 11880318 -143749802 + (TTATA)n Simple_repeat Simple_repeat 2 154 0 6 675 951 163 176 0 chr4 11880358 11880597 -143749523 + Lx9 LINE L1 7364 7644 0 6 675 231 364 7 98 chr4 11880834 11880977 -143749143 + L2b LINE L2 3035 3164 -211 6 675 274 389 60 35 chr4 11881679 11882046 -143748074 - LTR33A_ LTR ERVL -117 414 9 6 675 193 270 32 0 chr4 11882046 11882109 -143748011 + MIR SINE MIR 184 248 -14 6 675 733 203 20 20 chr4 11882576 11882722 -143747398 + B1_Mur3 SINE Alu 2 147 -2 6 675 316 278 133 10 chr4 11884429 11884527 -143745593 + PB1 SINE Alu 1 110 -17 6 675 377 288 0 0 chr4 11884592 11884672 -143745448 + ID4_ SINE ID 3 82 -1 6 675 264 185 30 15 chr4 11885094 11885160 -143744960 + L1M5 LINE L1 5778 5844 -335 6 675 23 0 0 0 chr4 11892056 11892079 -143738041 + AT_rich Low_complexity Low_complexity 1 23 0 6 675 198 0 0 0 chr4 11892597 11892619 -143737501 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 675 230 250 0 92 chr4 11892894 11893013 -143737107 + G-rich Low_complexity Low_complexity 5 112 0 6 675 21 36 0 0 chr4 11893146 11893174 -143736946 + GC_rich Low_complexity Low_complexity 1 28 0 6 675 214 292 22 11 chr4 11893526 11893616 -143736504 + (CCCCG)n Simple_repeat Simple_repeat 4 94 0 6 675 237 159 68 0 chr4 11894360 11894404 -143735716 + MIRc SINE MIR 17 63 -205 6 675 230 262 0 125 chr4 11896586 11896601 -143733519 - ORR1D1 LTR MaLR -149 235 222 6 675 1806 137 120 23 chr4 11896601 11896951 -143733169 - ORR1C2 LTR MaLR 0 384 1 6 675 5453 188 71 55 chr4 11896951 11898299 -143731821 - ORR1C2-int LTR MaLR 0 1370 1 6 675 344 246 517 60 chr4 11898299 11898450 -143731670 - ORR1D1 LTR MaLR -163 221 3 6 675 534 338 71 22 chr4 11898938 11899207 -143730913 - MLT1F LTR MaLR -255 293 12 6 675 510 268 26 7 chr4 11900309 11900463 -143729657 + RSINE1 SINE B4 4 160 -5 6 675 21 71 0 0 chr4 11902195 11902237 -143727883 + AT_rich Low_complexity Low_complexity 1 42 0 6 675 329 316 103 0 chr4 11902707 11902824 -143727296 - L2a LINE L2 0 3426 3298 6 675 3245 123 54 22 chr4 11904346 11904885 -143725235 - Lx4A LINE L1 -2 7056 6501 6 675 2283 71 9 3 chr4 11904886 11905210 -143724910 - L1_Mur2 LINE L1 -4154 1723 1398 6 675 2794 141 68 0 chr4 11905200 11905654 -143724466 - L1_Mur2 LINE L1 -6078 1008 524 6 675 185 0 0 39 chr4 11905792 11905818 -143724302 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 6 675 841 286 107 12 chr4 11905922 11906333 -143723787 - MLT1C LTR MaLR -15 452 3 6 675 842 256 33 9 chr4 11906720 11906933 -143723187 - ID_B1 SINE B4 -6 218 1 6 675 353 221 143 0 chr4 11907042 11907119 -143723001 + PB1D10 SINE Alu 21 108 -9 6 675 541 331 57 20 chr4 11907723 11907970 -143722150 + B4A SINE B4 2 257 -35 6 675 420 55 0 0 chr4 11908005 11908060 -143722060 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 675 279 0 0 0 chr4 11908962 11908993 -143721127 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 6 675 832 179 104 0 chr4 11908998 11909171 -143720949 - B3 SINE B2 -25 191 1 6 675 312 158 0 0 chr4 11910176 11910233 -143719887 + GA-rich Low_complexity Low_complexity 2 58 0 6 675 382 319 156 23 chr4 11910282 11910584 -143719536 + MLT1L LTR MaLR 250 591 -19 6 675 440 320 107 34 chr4 11911104 11911337 -143718783 + ORR1E LTR MaLR 2 251 -108 6 675 608 269 0 0 chr4 11911389 11911519 -143718601 + B1F2 SINE Alu 10 139 -10 6 675 185 0 0 39 chr4 11911519 11911545 -143718575 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 675 810 296 86 0 chr4 11911547 11911814 -143718306 + B4A SINE B4 3 292 0 6 675 292 200 55 66 chr4 11911870 11911925 -143718195 + ORR1E LTR MaLR 287 341 -38 6 675 1276 169 49 191 chr4 11911925 11912371 -143717749 - ORR1C2 LTR MaLR 0 384 2 6 675 292 200 55 66 chr4 11912371 11912406 -143717714 + ORR1E LTR MaLR 342 376 -3 6 675 307 296 46 0 chr4 11913616 11913724 -143716396 - MIRb SINE MIR -48 220 108 6 675 468 0 0 0 chr4 11914200 11914252 -143715868 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 675 915 36 0 0 chr4 11914406 11914517 -143715603 + (TC)n Simple_repeat Simple_repeat 1 111 0 6 675 205 292 27 27 chr4 11914605 11914679 -143715441 + MIRb SINE MIR 105 178 -90 6 675 279 0 0 0 chr4 11915110 11915141 -143714979 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 675 360 0 0 0 chr4 11915142 11915182 -143714938 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 675 184 283 38 0 chr4 11916838 11916891 -143713229 - MIRb SINE MIR -32 236 182 6 675 235 133 22 0 chr4 11917807 11917852 -143712268 + RMER15 LTR ERVL 5 50 -525 6 675 536 262 162 17 chr4 11917980 11918221 -143711899 + RMER15 LTR ERVL 300 575 0 6 675 1258 195 247 6 chr4 11918333 11918669 -143711451 + MTD LTR MaLR 3 419 0 6 675 647 257 141 65 chr4 11919395 11919736 -143710384 - MLT2B4 LTR ERVL -189 367 1 6 675 458 312 13 65 chr4 11919734 11919888 -143710232 + RSINE1 SINE B4 1 146 -19 6 675 196 281 11 58 chr4 11920137 11920224 -143709896 + L2c LINE L2 3074 3156 -231 6 675 258 272 117 76 chr4 11920351 11920522 -143709598 - MIRb SINE MIR -68 200 23 6 675 244 158 0 34 chr4 11922201 11922218 -143707902 + polypyrimidine Low_complexity Low_complexity 45 61 0 6 675 1012 97 17 17 chr4 11922218 11922397 -143707723 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 6 675 244 158 0 34 chr4 11922397 11922438 -143707682 + polypyrimidine Low_complexity Low_complexity 5 44 0 6 675 337 258 0 31 chr4 11922574 11922670 -143707450 - L1MA7 LINE L1 -269 6022 5930 6 675 1158 35 50 0 chr4 11923238 11923379 -143706741 + B1_Mus1 SINE Alu 1 148 0 6 675 293 273 35 0 chr4 11923409 11923496 -143706624 + PB1D10 SINE Alu 11 100 -49 6 675 1074 207 5 9 chr4 11923540 11923750 -143706370 + B3 SINE B2 8 216 0 6 675 407 319 199 29 chr4 11923811 11924127 -143705993 - MLT1J LTR MaLR -46 466 97 6 675 723 216 39 0 chr4 11924878 11925031 -143705089 + B3A SINE B2 2 160 -38 6 675 510 315 73 61 chr4 11925302 11925630 -143704490 - MLT1B LTR MaLR 0 390 59 6 675 729 300 44 7 chr4 11925794 11926089 -143704031 - MER67C LTR ERV1 0 711 406 6 675 340 358 58 69 chr4 11926248 11926524 -143703596 + B4 SINE B4 20 292 0 6 675 300 111 0 0 chr4 11926534 11926579 -143703541 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 676 248 336 18 18 chr4 11928266 11928378 -143701742 - ORR1E LTR MaLR -239 120 9 6 676 485 307 94 28 chr4 11928637 11928925 -143701195 + Charlie7 DNA MER1_type 424 730 -1882 7 676 265 209 90 37 chr4 11928925 11929059 -143701061 + Charlie7 DNA MER1_type 2351 2491 -121 7 676 439 266 9 26 chr4 11929338 11929454 -143700666 - PB1D10 SINE Alu 0 117 4 7 676 504 312 21 0 chr4 11929711 11929855 -143700265 - ID_B1 SINE B4 -75 149 3 7 676 535 255 107 18 chr4 11929863 11930031 -143700089 - B4 SINE B4 -73 219 37 7 676 925 250 11 100 chr4 11931358 11931556 -143698564 + B4 SINE B4 44 219 -73 7 676 258 32 0 0 chr4 11931556 11931587 -143698533 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 676 925 250 11 100 chr4 11931587 11931659 -143698461 + B4 SINE B4 220 290 -2 7 676 2392 212 58 18 chr4 11931890 11932462 -143697658 + RMER20B LTR ERVK 11 605 -22 7 676 225 0 0 0 chr4 11932960 11932985 -143697135 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 676 46 62 0 0 chr4 11932995 11933076 -143697044 + AT_rich Low_complexity Low_complexity 1 81 0 7 676 288 327 49 10 chr4 11933407 11933509 -143696611 - RSINE1 SINE B4 -12 153 48 7 676 844 281 109 38 chr4 11933509 11933856 -143696264 + MTE2a LTR MaLR 6 377 -2 7 676 313 308 161 12 chr4 11934370 11934531 -143695589 + MER5A DNA MER1_type 3 187 -2 7 676 539 332 71 28 chr4 11934792 11935217 -143694903 - L1MB2 LINE L1 -8 6163 5721 7 676 256 316 109 0 chr4 11935497 11935645 -143694475 - MIRb SINE MIR -44 224 57 7 676 853 194 119 10 chr4 11935773 11935966 -143694154 - B3 SINE B2 -1 215 2 7 676 216 314 64 25 chr4 11936321 11936478 -143693642 + MIRb SINE MIR 72 234 -34 7 676 348 64 0 0 chr4 11937645 11937692 -143692428 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 676 317 375 48 0 chr4 11937709 11937813 -143692307 - RSINE1 SINE B4 -16 149 41 7 676 246 32 0 0 chr4 11938323 11938354 -143691766 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 676 1016 93 0 28 chr4 11938354 11938498 -143691622 - B1_Mus1 SINE Alu -8 140 1 7 676 393 267 9 56 chr4 11938660 11938767 -143691353 + RSINE1 SINE B4 64 165 0 7 676 216 216 0 0 chr4 11938776 11938827 -143691293 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 676 351 231 16 16 chr4 11938903 11939026 -143691094 + L1M2 LINE L1 3253 3375 -2768 7 676 237 162 206 0 chr4 11939070 11939138 -143690982 - L1MA8 LINE L1 -28 6263 6182 7 676 3187 34 42 0 chr4 11939210 11939590 -143690530 + MTA_Mm LTR MaLR 1 396 0 7 676 1260 252 134 11 chr4 11939686 11940416 -143689704 - L1M3 LINE L1 -781 5510 4690 7 676 259 311 36 54 chr4 11940423 11940535 -143689585 - B3A SINE B2 -8 190 81 7 676 305 326 92 33 chr4 11940587 11940771 -143689349 - L1M3 LINE L1 -2379 3764 3570 7 676 298 266 0 27 chr4 11940787 11940899 -143689221 + L1M2 LINE L1 3190 3298 -2845 7 676 822 176 7 45 chr4 11940902 11941057 -143689063 + B1_Mur4 SINE Alu 2 150 0 7 676 751 267 117 22 chr4 11941057 11941380 -143688740 + L1M2 LINE L1 3157 3505 -2638 7 676 198 0 0 0 chr4 11941380 11941402 -143688718 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 7 676 751 267 117 22 chr4 11941402 11941445 -143688675 + L1M2 LINE L1 3506 3557 -2586 7 676 443 302 9 0 chr4 11941989 11942105 -143688015 + PB1D10 SINE Alu 1 117 0 7 676 261 0 0 0 chr4 11942194 11942223 -143687897 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 676 619 71 20 0 chr4 11943941 11944039 -143686081 + (TG)n Simple_repeat Simple_repeat 2 101 0 7 676 659 318 23 0 chr4 11944077 11944253 -143685867 - B4A SINE B4 -110 182 3 7 676 1202 242 171 40 chr4 11945661 11946347 -143683773 - Lx8 LINE L1 0 7473 6698 7 676 268 318 102 19 chr4 11946602 11946759 -143683361 + MIRb SINE MIR 35 204 -64 7 676 679 161 146 102 chr4 11946777 11946897 -143683223 + MTD LTR MaLR 1 111 -310 7 676 1226 158 119 0 chr4 11946897 11947099 -143683021 + URR1A DNA MER1_type 1 226 0 7 676 679 128 174 82 chr4 11947099 11947188 -143682932 + MTD LTR MaLR 102 196 -211 7 676 1077 97 0 0 chr4 11947188 11947332 -143682788 + B2_Mm2 SINE B2 3 146 -49 7 676 405 0 0 0 chr4 11947332 11947377 -143682743 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 676 189 107 0 0 chr4 11947382 11947410 -143682710 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 676 1062 163 78 15 chr4 11947410 11947616 -143682504 + MTD LTR MaLR 199 417 -2 7 676 1319 28 0 0 chr4 11947850 11947993 -143682127 + B1_Mm SINE Alu 5 147 0 7 676 231 36 0 0 chr4 11947993 11948021 -143682099 + (A)n Simple_repeat Simple_repeat 1 28 0 7 676 198 128 0 0 chr4 11948918 11948957 -143681163 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 676 248 326 21 0 chr4 11949428 11949523 -143680597 + L1M5 LINE L1 5511 5607 -517 7 676 734 252 180 8 chr4 11950248 11950492 -143679628 + B4A SINE B4 1 286 -6 7 676 396 0 0 0 chr4 11950546 11950590 -143679530 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 676 372 43 0 0 chr4 11950590 11950635 -143679485 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 676 2415 253 148 18 chr4 11951073 11951686 -143678434 + Lx5 LINE L1 6455 7115 -581 7 676 414 0 0 0 chr4 11951848 11951894 -143678226 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 676 1217 44 0 0 chr4 11951945 11952082 -143678038 + B1_Mus2 SINE Alu 1 137 -10 7 676 627 14 0 0 chr4 11952084 11952156 -143677964 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 7 676 2779 116 16 42 chr4 11952723 11953154 -143676966 - RLTR9B2 LTR ERVK 0 420 1 7 676 1277 73 94 11 chr4 11953288 11953439 -143676681 + B2_Mm2 SINE B2 1 157 -38 7 676 204 67 0 0 chr4 11953439 11953469 -143676651 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 7 676 360 43 0 0 chr4 11953470 11953516 -143676604 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 676 1277 73 94 11 chr4 11953516 11953542 -143676578 + B2_Mm2 SINE B2 158 192 -3 7 676 213 233 0 0 chr4 11953580 11953623 -143676497 - PB1 SINE Alu -16 111 69 7 676 1070 157 131 0 chr4 11954176 11954374 -143675746 + URR1A DNA MER1_type 3 226 0 7 676 1969 246 48 21 chr4 11954881 11955457 -143674663 - Lx6 LINE L1 -26 7434 6455 7 676 315 341 16 39 chr4 11955480 11955608 -143674512 - MamRep1879 DNA hAT? -73 143 19 7 676 251 156 106 30 chr4 11957877 11957943 -143672177 + MLT1D LTR MaLR 70 140 -365 7 676 17578 124 41 30 chr4 11957944 11961369 -143668751 - L1VL4 LINE L1 -2168 3715 247 7 676 2203 55 31 0 chr4 11961369 11961659 -143668461 - L1VL4 LINE L1 -5492 810 512 7 676 494 279 23 52 chr4 11962420 11962594 -143667526 - MER2 DNA MER2_type -90 255 87 7 676 235 298 127 67 chr4 11963286 11963530 -143666590 - MER74B LTR ERVL -192 430 111 7 676 255 164 0 0 chr4 11963620 11963670 -143666450 + MT2A LTR ERVL 490 533 0 7 676 382 202 46 35 chr4 11964271 11964358 -143665762 - MTD LTR MaLR 0 419 332 7 676 3556 53 32 63 chr4 11964358 11964500 -143665620 - L1VL2 LINE L1 -2170 1445 1292 7 676 665 82 0 10 chr4 11964500 11964598 -143665522 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 7 676 3556 53 32 63 chr4 11964598 11964619 -143665501 - MusHAL1 LINE L1 -2324 388 388 7 676 1620 4 4 0 chr4 11964619 11964885 -143665235 + (TTCCC)n Simple_repeat Simple_repeat 1 267 0 7 676 1251 42 28 0 chr4 11964885 11965027 -143665093 - B1_Mm SINE Alu -1 146 1 7 676 5482 88 97 25 chr4 11965027 11966150 -143663970 - L1VL2 LINE L1 -2324 1291 61 7 676 1295 41 0 0 chr4 11968350 11968496 -143661624 - B1_Mm SINE Alu 0 147 2 7 676 340 290 68 127 chr4 11969329 11969566 -143660554 - MIR SINE MIR -39 229 7 7 676 21 36 0 0 chr4 11969802 11969830 -143660290 + AT_rich Low_complexity Low_complexity 1 28 0 7 676 314 53 0 0 chr4 11969852 11969890 -143660230 + L1Md_F2 LINE L1 6001 6038 -544 7 676 993 212 53 24 chr4 11969908 11970116 -143660004 + B3 SINE B2 1 214 -2 7 676 198 0 0 0 chr4 11970330 11970352 -143659768 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 676 240 35 0 0 chr4 11970354 11970383 -143659737 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 676 510 17 0 0 chr4 11970382 11970441 -143659679 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 676 67 76 0 0 chr4 11970850 11970994 -143659126 + AT_rich Low_complexity Low_complexity 1 144 0 7 676 2408 11 0 0 chr4 11970994 11971271 -143658849 - L1Md_A LINE L1 -478 5405 5129 7 676 2338 4 0 0 chr4 11971269 11971523 -143658597 + L1Md_A LINE L1 5333 5586 -297 7 676 9587 5 0 0 chr4 11971523 11972519 -143657601 + L1Md_A LINE L1 5587 6582 0 7 676 207 0 0 0 chr4 11973329 11973352 -143656768 + (A)n Simple_repeat Simple_repeat 1 23 0 7 676 1957 224 24 80 chr4 11975592 11975715 -143654405 - RLTR16 LTR ERVK 0 505 406 7 676 1327 49 6 11 chr4 11975715 11975899 -143654221 + (CA)n Simple_repeat Simple_repeat 1 184 -350 7 676 1327 49 6 11 chr4 11975904 11976253 -143653867 + (CA)n Simple_repeat Simple_repeat 185 534 0 7 676 1957 224 24 80 chr4 11976253 11976655 -143653465 - RLTR16 LTR ERVK -104 401 1 7 676 302 269 44 44 chr4 11976993 11977106 -143653014 - B3 SINE B2 -3 213 101 7 676 970 257 75 37 chr4 11977137 11977497 -143652623 + MTD LTR MaLR 6 403 -16 7 676 214 118 0 0 chr4 11977510 11977544 -143652576 - B3A SINE B2 -164 34 1 7 676 405 308 29 11 chr4 11978215 11978376 -143651744 + MIR SINE MIR 13 180 -88 7 676 335 316 91 48 chr4 11979376 11979562 -143650558 + MLT1A1 LTR MaLR 1 194 -214 7 676 231 333 12 49 chr4 11979530 11979612 -143650508 - ID_B1 SINE B4 -68 156 78 7 676 277 272 0 88 chr4 11979649 11979762 -143650358 + L1MA8 LINE L1 6159 6261 -30 7 676 310 232 27 55 chr4 11979769 11979842 -143650278 - tRNA-Ala-GCY_ tRNA tRNA -2 73 3 7 676 316 320 0 39 chr4 11979871 11979975 -143650145 - ID_B1 SINE B4 -8 216 117 7 676 455 234 72 52 chr4 11980179 11980373 -143649747 + L1MB3 LINE L1 5954 6151 -32 7 676 231 229 0 0 chr4 11982459 11982520 -143647600 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 676 380 304 0 64 chr4 11982530 11982639 -143647481 - RSINE1 SINE B4 -4 161 60 7 676 406 138 15 0 chr4 11982640 11982705 -143647415 + RLTR21 LTR ERVK 1 66 -1506 7 676 3590 70 2 53 chr4 11982707 11983193 -143646927 + L1_Mus2 LINE L1 6105 6565 -1 7 676 218 231 0 0 chr4 11983196 11983235 -143646885 + MIR SINE MIR 219 257 -5 7 676 3013 51 3 0 chr4 11983274 11983630 -143646490 - L1Md_F3 LINE L1 -1 6583 6227 8 676 256 217 80 0 chr4 11983855 11983954 -143646166 + L1M LINE L1 5254 5361 -763 8 676 869 176 193 0 chr4 11983981 11984157 -143645963 + B3 SINE B2 3 212 -4 8 676 630 294 82 22 chr4 11984652 11984968 -143645152 + L1MC4a LINE L1 6887 7221 -661 8 676 708 265 106 14 chr4 11984972 11985179 -143644941 + B4A SINE B4 4 229 -63 8 676 288 0 0 0 chr4 11985206 11985238 -143644882 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 676 671 237 101 5 chr4 11985250 11985458 -143644662 + L1MC4a LINE L1 7411 7638 -244 8 676 752 259 205 30 chr4 11986143 11986441 -143643679 + Lx6 LINE L1 7058 7407 -53 8 676 28 48 0 0 chr4 11987066 11987108 -143643012 + AT_rich Low_complexity Low_complexity 1 42 0 8 676 351 65 0 0 chr4 11987230 11987276 -143642844 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 676 342 255 46 66 chr4 11987283 11987434 -143642686 - RSINE1 SINE B4 -16 149 2 8 676 719 131 176 194 chr4 11987703 11987930 -143642190 + URR1A DNA MER1_type 1 223 -3 8 676 443 258 29 114 chr4 11988485 11988695 -143641425 + B3A SINE B2 7 198 0 8 676 204 125 0 0 chr4 11990316 11990348 -143639772 + (A)n Simple_repeat Simple_repeat 1 32 0 8 676 1956 234 46 15 chr4 11992149 11992630 -143637490 + RLTR16 LTR ERVK 1 496 -9 8 676 7752 65 7 20 chr4 11992754 11993960 -143636160 + L1_Mus2 LINE L1 5369 6565 -1 8 676 2033 21 0 0 chr4 11993965 11994203 -143635917 - L1_Mm LINE L1 -517 5366 5129 8 676 3884 18 0 0 chr4 11994201 11994635 -143635485 + L1_Mm LINE L1 5333 5766 -117 8 676 7479 32 0 0 chr4 11994743 11995567 -143634553 + L1Md_T LINE L1 5759 6582 0 8 676 498 241 188 0 chr4 11996240 11996352 -143633768 + RSINE1 SINE B4 2 134 -31 8 676 492 62 0 0 chr4 11996367 11996431 -143633689 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 676 232 285 30 26 chr4 11997225 11997309 -143632811 - ID4_ SINE ID -1 82 5 8 676 1119 219 19 0 chr4 11997895 11998105 -143632015 - B3 SINE B2 -2 214 1 8 676 1252 75 0 0 chr4 11998231 11998377 -143631743 + B1_Mus1 SINE Alu 1 146 -2 8 676 8547 49 1 4 chr4 11998377 11999362 -143630758 + L1Md_F2 LINE L1 5601 6582 0 8 676 207 0 0 0 chr4 11999368 11999391 -143630729 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 676 227 93 23 0 chr4 11999555 11999598 -143630522 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 676 337 43 0 0 chr4 11999952 11999999 -143630121 - L1_Mus1 LINE L1 -3 6564 6518 8 676 1294 73 6 6 chr4 12000000 12000179 -143629941 - L1_Mus2 LINE L1 -51 6515 6337 1 676 260 134 85 0 chr4 12000201 12000283 -143629837 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 676 1559 209 130 0 chr4 12000506 12000837 -143629283 + ORR1D1 LTR MaLR 1 374 0 3 676 620 258 36 28 chr4 12001295 12001494 -143628626 - ID_B1 SINE B4 -1 223 26 4 676 240 207 81 47 chr4 12001890 12001976 -143628144 + AmnSINE1 SINE SINE 3 91 -484 5 676 347 206 0 0 chr4 12002198 12002266 -143627854 + L1MC4a LINE L1 7547 7614 -268 6 676 220 208 0 0 chr4 12002538 12002591 -143627529 + A-rich Low_complexity Low_complexity 1 53 0 7 676 1519 185 218 6 chr4 12003775 12004091 -143626029 + ORR1C2 LTR MaLR 1 383 -1 8 676 597 250 0 8 chr4 12005045 12005170 -143624950 + ID_B1 SINE B4 100 223 -1 9 676 431 257 37 0 chr4 12005584 12005693 -143624427 - B4A SINE B4 -166 126 14 1 676 207 0 0 0 chr4 12006167 12006190 -143623930 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 676 23 92 0 0 chr4 12007145 12007210 -143622910 + AT_rich Low_complexity Low_complexity 1 65 0 1 676 418 169 0 25 chr4 12007612 12007691 -143622429 - RLTR19-int LTR ERVK -4971 1166 1090 1 676 8217 188 60 16 chr4 12008120 12008244 -143621876 - RodERV21-int LTR ERV1 -2280 2711 2586 1 676 272 27 27 0 chr4 12008244 12008281 -143621839 + (TGG)n Simple_repeat Simple_repeat 2 39 0 1 676 8217 188 60 16 chr4 12008281 12009775 -143620345 - RodERV21-int LTR ERV1 -2406 2585 1022 1 676 252 211 34 34 chr4 12009862 12009921 -143620199 - RLTR42-int LTR ERVK -3775 1747 1689 1 676 880 246 27 76 chr4 12009944 12010338 -143619782 - RLTR42-int LTR ERVK -4179 1343 1104 1 676 2605 197 88 58 chr4 12010559 12011460 -143618660 - RodERV21-int LTR ERV1 -3992 999 1 1 676 213 39 0 0 chr4 12011460 12011486 -143618634 + (CATTA)n Simple_repeat Simple_repeat 1 26 0 1 676 820 205 101 39 chr4 12011526 12011734 -143618386 - RMER21B LTR ERV1 -275 567 347 1 676 264 289 0 12 chr4 12011766 12011850 -143618270 - RMER21B LTR ERV1 -661 181 99 1 676 1279 48 0 0 chr4 12012724 12012871 -143617249 + B1_Mus2 SINE Alu 1 147 0 1 676 311 141 0 34 chr4 12012871 12012959 -143617161 + A-rich Low_complexity Low_complexity 1 85 0 2 676 472 236 16 47 chr4 12013238 12013367 -143616753 + ID_B1 SINE B4 79 203 -21 2 676 246 32 0 0 chr4 12013382 12013413 -143616707 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 676 257 295 39 0 chr4 12013457 12013535 -143616585 + MIR SINE MIR 92 172 -90 2 676 1154 62 7 14 chr4 12014181 12014329 -143615791 + B1_Mus2 SINE Alu 1 147 0 2 676 243 0 0 0 chr4 12015170 12015197 -143614923 + (A)n Simple_repeat Simple_repeat 1 27 0 2 676 1182 61 0 33 chr4 12015479 12015631 -143614489 - B1_Mm SINE Alu 0 147 1 2 676 35 41 0 0 chr4 12022919 12022968 -143607152 + AT_rich Low_complexity Low_complexity 1 49 0 2 676 183 191 234 0 chr4 12023240 12023287 -143606833 + L4 LINE RTE 1611 1668 -361 2 676 37 23 0 0 chr4 12024139 12024183 -143605937 + AT_rich Low_complexity Low_complexity 1 44 0 2 676 401 280 237 39 chr4 12024747 12024903 -143605217 - B3A SINE B2 -10 188 2 3 676 546 254 358 9 chr4 12024968 12025183 -143604937 - B4A SINE B4 -2 290 1 3 676 1402 75 21 11 chr4 12025761 12025949 -143604171 - B2_Mm1a SINE B2 -3 190 1 3 676 244 327 26 80 chr4 12026246 12026359 -143603761 - B1_Mur2 SINE Alu -21 128 22 3 676 256 136 91 0 chr4 12026844 12026888 -143603232 - MamGyp-int LTR Gypsy -4810 252 205 3 676 1454 156 51 27 chr4 12028445 12028459 -143601661 - MYSERV16_I-int LTR ERVK -989 1337 1323 3 676 3519 46 2 2 chr4 12028459 12028855 -143601265 + MTA_Mm LTR MaLR 1 396 0 3 676 1454 156 51 27 chr4 12028855 12029136 -143600984 - MYSERV16_I-int LTR ERVK -1004 1322 1036 3 676 243 296 59 39 chr4 12029136 12029238 -143600882 - RMER4A LTR ERVK -49 417 314 3 676 1230 256 128 66 chr4 12029251 12030011 -143600109 - MYSERV16_I-int LTR ERVK -1419 907 101 3 676 8656 214 53 30 chr4 12030003 12032060 -143598060 - MYSERV6-int LTR ERVK -4350 4609 2505 3 676 529 241 28 7 chr4 12032474 12032616 -143597504 - URR1B DNA MER1_type -21 204 60 3 676 701 228 97 23 chr4 12033331 12033547 -143596573 + L1_Mur2 LINE L1 888 1119 -5967 4 676 3271 144 298 12 chr4 12033562 12033994 -143596126 + L1VL2 LINE L1 395 897 -5737 4 676 2674 86 23 3 chr4 12033994 12034344 -143595776 + L1_Mus1 LINE L1 6211 6567 0 4 676 12855 179 64 62 chr4 12034344 12036661 -143593459 + L1VL2 LINE L1 898 3341 -2545 4 676 251 213 62 74 chr4 12036661 12036742 -143593378 + RLTR25B LTR ERVK 430 509 -519 4 676 760 43 0 0 chr4 12036691 12036785 -143593335 + B1_Mm SINE Alu 54 147 0 4 676 12855 179 64 62 chr4 12036785 12037617 -143592503 + L1VL2 LINE L1 3342 4220 -1666 4 676 341 182 0 0 chr4 12037605 12037671 -143592449 + L1_Mur2 LINE L1 2673 2738 -3139 4 676 1027 152 6 17 chr4 12037671 12037695 -143592425 - B2_Mm1t SINE B2 -13 180 159 4 676 207 0 0 0 chr4 12037695 12037718 -143592402 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 676 1079 128 0 0 chr4 12037718 12037874 -143592246 - B2_Mm2 SINE B2 -38 157 2 4 676 430 178 33 0 chr4 12037874 12037964 -143592156 + L1_Mur2 LINE L1 2740 2832 -3045 4 676 781 185 0 30 chr4 12038045 12038179 -143591941 - B1_Mur2 SINE Alu -19 130 1 4 676 242 353 77 19 chr4 12038179 12038193 -143591927 - B4 SINE B4 -100 192 90 4 676 312 366 0 0 chr4 12038193 12038275 -143591845 - PB1D10 SINE Alu -35 82 1 5 676 641 259 20 25 chr4 12038345 12038527 -143591593 - B3 SINE B2 -16 179 1 5 676 212 245 95 57 chr4 12038667 12038799 -143591321 - L2a LINE L2 0 3387 3253 5 676 236 0 0 81 chr4 12038887 12038924 -143591196 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 5 676 804 121 145 0 chr4 12038924 12039048 -143591072 - B1_Mus1 SINE Alu -2 146 5 5 676 455 222 0 24 chr4 12039058 12039141 -143590979 - B1_Mus1 SINE Alu -67 81 1 5 676 214 229 0 28 chr4 12039148 12039220 -143590900 + T-rich Low_complexity Low_complexity 2 71 0 5 676 628 97 301 0 chr4 12039221 12039334 -143590786 - B1_Mm SINE Alu 0 147 1 5 676 475 291 14 14 chr4 12039334 12039477 -143590643 - B1_Mur1 SINE Alu -1 148 6 5 676 314 184 13 0 chr4 12040660 12040736 -143589384 + GA-rich Low_complexity Low_complexity 1 77 0 5 676 21 36 0 0 chr4 12043707 12043735 -143586385 + AT_rich Low_complexity Low_complexity 1 28 0 6 676 271 139 47 0 chr4 12043735 12043778 -143586342 + L1_Mur2 LINE L1 2823 2867 -3010 6 676 8870 171 20 55 chr4 12044052 12044203 -143585917 + Lx LINE L1 4134 4278 -1605 6 676 1187 75 0 0 chr4 12044203 12044350 -143585770 + B1_Mus2 SINE Alu 1 147 0 6 676 8870 158 20 37 chr4 12044350 12046750 -143583370 + Lx LINE L1 4279 6629 -25 6 676 5327 208 69 22 chr4 12046761 12047673 -143582447 + L1_Mur2 LINE L1 1169 2122 -3755 6 676 1228 69 0 0 chr4 12047673 12047818 -143582302 + B1_Mus1 SINE Alu 3 147 -1 6 676 5327 207 68 22 chr4 12047818 12048422 -143581698 + L1_Mur2 LINE L1 2123 2753 -3124 6 676 396 71 0 0 chr4 12048435 12048491 -143581629 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 6 676 474 18 0 0 chr4 12048548 12048603 -143581517 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6 676 1101 115 0 0 chr4 12048603 12048759 -143581361 - B2_Mm2 SINE B2 -38 157 2 6 676 425 132 11 78 chr4 12048759 12048849 -143581271 + L1_Mur2 LINE L1 2750 2833 -3047 6 676 772 185 0 30 chr4 12048929 12049063 -143581057 - B1_Mur2 SINE Alu -19 130 1 6 676 242 353 77 19 chr4 12049063 12049077 -143581043 - B4 SINE B4 -100 192 90 6 676 312 366 0 0 chr4 12049077 12049159 -143580961 - PB1D10 SINE Alu -35 82 1 7 676 642 263 20 25 chr4 12049229 12049411 -143580709 - B3 SINE B2 -16 179 1 7 676 200 275 156 45 chr4 12049551 12049683 -143580437 - L2a LINE L2 0 3387 3253 7 676 392 0 21 0 chr4 12049779 12049827 -143580293 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 7 676 772 144 136 0 chr4 12049827 12049952 -143580168 - B1_Mus1 SINE Alu -2 146 5 7 676 421 247 0 24 chr4 12049962 12050045 -143580075 - B1_Mus1 SINE Alu -67 81 1 7 676 255 31 0 0 chr4 12050124 12050156 -143579964 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 676 651 95 276 0 chr4 12050156 12050261 -143579859 - B1_Mm SINE Alu -13 134 1 7 676 433 280 19 95 chr4 12050261 12050418 -143579702 - B1_Mur1 SINE Alu -2 147 2 7 676 370 167 12 12 chr4 12051654 12051739 -143578381 + GA-rich Low_complexity Low_complexity 2 86 0 7 676 275 109 0 52 chr4 12054600 12054658 -143575462 + T-rich Low_complexity Low_complexity 1 55 0 8 676 246 167 48 0 chr4 12054742 12054784 -143575336 + L1_Mur2 LINE L1 2824 2867 -3010 8 676 3749 57 37 2 chr4 12055529 12055803 -143574317 + MT2C_Mm LTR ERVL 1 277 -198 8 676 600 14 0 0 chr4 12055803 12055872 -143574248 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 8 676 3749 57 37 2 chr4 12055872 12056056 -143574064 + MT2C_Mm LTR ERVL 278 473 -2 8 676 23 0 0 0 chr4 12057349 12057372 -143572748 + AT_rich Low_complexity Low_complexity 1 23 0 8 677 22 0 0 0 chr4 12059166 12059188 -143570932 + AT_rich Low_complexity Low_complexity 1 22 0 8 677 4205 94 52 2 chr4 12059305 12059861 -143570259 - MT2B2 LTR ERVL 0 584 1 8 677 4238 41 96 17 chr4 12060299 12060873 -143569247 - RLTR6_Mm LTR ERV1 -35 619 1 8 677 10070 152 87 86 chr4 12060873 12064712 -143565408 - MMVL30-int LTR ERV1 0 3698 1 8 677 4348 40 94 17 chr4 12064713 12065300 -143564820 - RLTR6_Mm LTR ERV1 -15 639 8 8 677 258 56 0 0 chr4 12065903 12065939 -143564181 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 677 258 184 0 73 chr4 12066195 12066277 -143563843 + A-rich Low_complexity Low_complexity 1 76 0 8 677 1175 102 6 0 chr4 12066482 12066659 -143563461 + (TTCTC)n Simple_repeat Simple_repeat 3 180 0 9 677 551 112 11 0 chr4 12066661 12066750 -143563370 + (CCCCCT)n Simple_repeat Simple_repeat 3 92 0 9 677 773 49 10 0 chr4 12066751 12066853 -143563267 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 9 677 1077 83 0 0 chr4 12066855 12066987 -143563133 - B1_Mus1 SINE Alu -14 134 3 9 677 186 43 0 0 chr4 12067053 12067076 -143563044 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 677 21 0 0 0 chr4 12073847 12073868 -143556252 + AT_rich Low_complexity Low_complexity 1 21 0 9 677 2420 95 153 0 chr4 12073969 12074316 -143555804 - MTB LTR MaLR 0 400 1 9 677 5679 149 110 16 chr4 12074316 12075459 -143554661 - MTB-int LTR MaLR 0 1258 8 9 677 3041 87 23 3 chr4 12075464 12075856 -143554264 - MTB LTR MaLR 0 400 1 9 677 190 299 43 29 chr4 12076547 12076616 -143553504 - MIRc SINE MIR -112 156 87 9 677 1005 62 9 2 chr4 12076762 12076906 -143553214 + B1_Mm SINE Alu 6 149 0 9 677 1191 119 42 36 chr4 12077010 12077202 -143552918 - B2_Mm1t SINE B2 0 193 1 9 677 393 287 237 39 chr4 12077671 12077827 -143552293 - B3A SINE B2 -10 188 2 1 677 577 244 358 9 chr4 12077892 12078107 -143552013 - B4A SINE B4 -2 290 1 1 677 1452 78 10 10 chr4 12078680 12078873 -143551247 - B2_Mm1t SINE B2 0 193 1 1 677 231 336 26 80 chr4 12079170 12079283 -143550837 - B1_Mur2 SINE Alu -21 128 22 1 677 258 167 24 0 chr4 12080041 12080083 -143550037 - MamGyp-int LTR Gypsy -4810 252 210 1 677 1084 92 23 0 chr4 12082054 12082228 -143547892 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 677 516 105 0 0 chr4 12082228 12082304 -143547816 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 1 677 1308 48 0 0 chr4 12082304 12082451 -143547669 - B1_Mus2 SINE Alu 0 147 1 1 677 815 188 105 15 chr4 12083490 12083690 -143546430 - URR1B DNA MER1_type -7 218 1 1 677 273 29 0 0 chr4 12083995 12084029 -143546091 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 677 1114 53 0 8 chr4 12084031 12084163 -143545957 - B1_Mus2 SINE Alu -12 135 5 1 677 509 239 30 48 chr4 12086491 12086658 -143543462 + RNLTR23 LTR ERVK 479 642 0 1 677 1068 244 148 56 chr4 12086955 12087431 -143542689 + L1MB7 LINE L1 5200 5699 -485 1 677 1418 98 5 16 chr4 12087431 12087618 -143542502 + B2_Mm1t SINE B2 2 186 -7 1 677 1068 250 169 79 chr4 12087618 12087960 -143542160 + L1MB7 LINE L1 5700 6091 -93 1 677 1122 189 94 5 chr4 12088584 12088807 -143541313 - MTC LTR MaLR -18 403 161 1 677 1987 141 364 15 chr4 12088814 12089355 -143540765 + Lx5 LINE L1 2274 3003 -2874 1 677 6368 170 60 5 chr4 12089366 12090126 -143539994 + Lx5 LINE L1 5283 6115 -935 1 677 459 0 0 0 chr4 12090126 12090177 -143539943 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 677 288 0 0 0 chr4 12090177 12090208 -143539912 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 677 6368 199 98 14 chr4 12090208 12091080 -143539040 + Lx5 LINE L1 6116 7047 -3 1 677 355 246 160 24 chr4 12091955 12092080 -143538040 - B1F2 SINE Alu -7 142 1 1 677 535 271 42 0 chr4 12092111 12092229 -143537891 - ID_B1 SINE B4 -24 200 78 1 677 261 196 0 0 chr4 12092274 12092330 -143537790 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 677 1444 64 31 26 chr4 12094379 12094572 -143535548 - B2_Mm2 SINE B2 0 195 2 1 677 342 0 0 0 chr4 12095596 12095634 -143534486 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 677 261 0 0 0 chr4 12096862 12096891 -143533229 + (CATTT)n Simple_repeat Simple_repeat 5 33 0 1 677 1380 205 189 3 chr4 12099306 12099639 -143530481 - MTD LTR MaLR -6 413 19 1 677 225 160 26 39 chr4 12099640 12099718 -143530402 + A-rich Low_complexity Low_complexity 4 80 0 1 677 640 180 23 8 chr4 12100470 12100599 -143529521 + RMER20B LTR ERVK 234 364 -263 1 677 320 287 8 92 chr4 12100619 12100738 -143529382 + RMER20B LTR ERVK 483 591 -36 1 677 246 32 0 0 chr4 12100892 12100923 -143529197 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 677 317 24 0 23 chr4 12101125 12101168 -143528952 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1 677 569 245 79 0 chr4 12101200 12101339 -143528781 - B3A SINE B2 -47 151 2 1 677 241 278 50 30 chr4 12101744 12101844 -143528276 - L2c LINE L2 -245 3142 3041 1 677 985 183 11 0 chr4 12101891 12102077 -143528043 + RLTR15 LTR ERVK 11 198 -161 1 677 553 274 112 42 chr4 12102264 12102523 -143527597 - MLT2B4 LTR ERVL 0 556 280 1 677 1818 153 55 61 chr4 12102587 12102915 -143527205 - ORR1A3 LTR MaLR 0 326 1 1 677 5119 119 15 8 chr4 12102916 12103693 -143526427 - ORR1A3-int LTR MaLR -1 1962 1180 1 677 1639 168 16 4 chr4 12103675 12103980 -143526140 - ORR1A3-int LTR MaLR -1517 446 162 1 677 303 71 0 0 chr4 12103980 12104022 -143526098 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 1 677 1499 224 67 8 chr4 12104047 12104384 -143525736 + MTD LTR MaLR 58 406 -13 1 677 25 31 0 0 chr4 12104836 12104868 -143525252 + AT_rich Low_complexity Low_complexity 1 32 0 1 677 189 0 0 0 chr4 12105237 12105258 -143524862 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 677 1012 333 74 24 chr4 12105349 12105887 -143524233 - Lx8 LINE L1 -189 7284 6720 1 677 336 228 84 102 chr4 12106869 12107035 -143523085 + RMER17C-int LTR ERVK 362 524 -2714 1 677 1029 278 34 60 chr4 12106987 12107370 -143522750 + RodERV21-int LTR ERV1 706 1078 -3913 1 677 5789 279 26 29 chr4 12107476 12109079 -143521041 + RodERV21-int LTR ERV1 1121 2718 -2273 1 677 189 0 0 0 chr4 12109175 12109196 -143520924 + (A)n Simple_repeat Simple_repeat 1 21 0 1 677 495 341 28 46 chr4 12109216 12109714 -143520406 + RodERV21-int LTR ERV1 3586 4074 -3017 1 677 274 380 6 0 chr4 12109934 12110113 -143520007 + MER34-int LTR ERV1 3470 3649 -3952 1 677 356 20 59 0 chr4 12110178 12110229 -143519891 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 677 295 253 104 39 chr4 12110492 12110749 -143519371 + MER34-int LTR ERV1 4671 5119 -1972 1 677 287 274 64 36 chr4 12111189 12111299 -143518821 + MMERGLN-int LTR ERV1 4760 4872 -2684 1 677 1459 311 44 60 chr4 12111623 12112949 -143517171 + RodERV21-int LTR ERV1 2702 4788 -203 1 677 715 323 22 0 chr4 12113465 12113694 -143516426 - Lx8 LINE L1 -780 6693 6460 1 677 254 252 79 63 chr4 12113749 12113876 -143516244 - LTRIS2 LTR ERV1 -92 472 344 1 677 671 288 83 61 chr4 12114360 12114770 -143515350 + L1MC3 LINE L1 6879 7297 -488 1 677 468 208 129 0 chr4 12114805 12114906 -143515214 + B3 SINE B2 3 116 -100 1 677 411 21 0 0 chr4 12114914 12114962 -143515158 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 677 290 130 0 53 chr4 12114962 12115019 -143515101 + B3 SINE B2 162 215 -1 1 677 373 288 56 64 chr4 12115051 12115285 -143514835 + L1MC3 LINE L1 7541 7772 -223 1 677 243 331 76 61 chr4 12115570 12115627 -143514493 - RSINE1 SINE B4 -2 163 105 1 677 2337 145 187 21 chr4 12115627 12115788 -143514332 + RMER2 LTR ERV1 1 173 -394 1 677 3765 20 0 0 chr4 12115788 12116184 -143513936 + MTA_Mm LTR MaLR 1 396 0 1 677 2337 145 187 21 chr4 12116184 12116336 -143513784 + RMER2 LTR ERV1 174 373 -194 1 677 333 0 0 0 chr4 12116336 12116373 -143513747 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 677 2337 145 187 21 chr4 12116373 12116544 -143513576 + RMER2 LTR ERV1 374 566 -1 1 677 413 321 154 26 chr4 12116544 12116769 -143513351 - B4 SINE B4 -36 256 3 1 677 395 336 42 21 chr4 12117231 12117468 -143512652 - L1M5 LINE L1 -1147 4999 4758 1 677 4996 71 7 2 chr4 12117643 12118274 -143511846 - L1_Mus1 LINE L1 0 6567 5945 1 677 726 217 64 77 chr4 12118409 12118629 -143511491 - ID_B1 SINE B4 -6 218 2 1 677 368 47 44 55 chr4 12119561 12119652 -143510468 + (TTTTTG)n Simple_repeat Simple_repeat 2 91 0 1 677 373 326 29 7 chr4 12119720 12119856 -143510264 - RMER15 LTR ERVL -16 559 421 1 677 405 157 0 14 chr4 12119858 12119929 -143510191 + MT2B LTR ERVL 3 72 -529 1 677 704 203 28 0 chr4 12119930 12120073 -143510047 - RMER6C LTR ERVK -2 688 542 1 677 500 266 175 0 chr4 12120059 12120236 -143509884 + MT2B LTR ERVL 394 601 0 1 677 377 270 0 33 chr4 12120236 12120328 -143509792 - RMER15 LTR ERVL -150 425 337 1 677 1327 137 52 5 chr4 12121144 12121357 -143508763 - Lx2 LINE L1 0 6997 6775 1 677 1164 119 0 0 chr4 12121357 12121517 -143508603 - Lx2 LINE L1 -354 6643 6484 1 677 3114 150 38 16 chr4 12121518 12122079 -143508041 - L1VL4 LINE L1 -514 5363 4789 1 677 2805 46 61 0 chr4 12122079 12122405 -143507715 - ORR1A1 LTR MaLR 0 346 1 1 677 3114 150 38 16 chr4 12122405 12122418 -143507702 - L1VL4 LINE L1 -1089 4788 4776 1 677 20594 74 78 2 chr4 12122432 12127547 -143502573 - L1Md_A LINE L1 0 6582 2459 1 677 2343 54 2 218 chr4 12127547 12128024 -143502096 - RLTR10 LTR ERVK -16 374 1 1 677 8062 39 19 3 chr4 12128024 12128647 -143501473 - RLTR10-int LTR ERVK -1 1986 1366 1 677 347 0 23 0 chr4 12128647 12128690 -143501430 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 677 8062 39 19 3 chr4 12128690 12129027 -143501093 - RLTR10-int LTR ERVK -622 1365 1012 1 677 302 228 0 0 chr4 12129027 12129084 -143501036 - RLTR10-int LTR ERVK -6039 503 447 1 677 558 322 27 34 chr4 12129139 12129467 -143500653 - IAP-d-int LTR ERVK -5479 1063 738 1 677 3975 49 41 9 chr4 12129514 12130379 -143499741 - RLTR10-int LTR ERVK -983 1004 40 1 677 9022 68 5 0 chr4 12130386 12132426 -143497694 - L1VL1 LINE L1 -3432 2451 400 1 677 19143 161 14 18 chr4 12132426 12132546 -143497574 - L1VL4 LINE L1 -1089 4797 4679 1 677 180 0 0 0 chr4 12132546 12132566 -143497554 + (C)n Simple_repeat Simple_repeat 1 20 0 1 677 19143 161 14 18 chr4 12132566 12133663 -143496457 - L1VL4 LINE L1 -1208 4678 3602 1 677 2847 37 61 0 chr4 12133663 12133989 -143496131 + ORR1A0 LTR MaLR 1 346 0 1 677 19143 153 12 13 chr4 12133989 12137007 -143493113 - L1VL4 LINE L1 -2285 3601 568 1 677 564 177 213 4 chr4 12137047 12137181 -143492939 + RLTR20D LTR ERVK 1 146 -422 1 677 5707 191 48 42 chr4 12137326 12137514 -143492606 + Lx6 LINE L1 3355 3500 -2380 1 677 5447 134 34 12 chr4 12137514 12138345 -143491775 - Lx2 LINE L1 0 6997 6149 1 677 5707 164 53 12 chr4 12138345 12139455 -143490665 + Lx6 LINE L1 3501 4657 -1223 1 677 342 0 0 0 chr4 12139455 12139493 -143490627 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 677 39502 7 0 1 chr4 12139499 12145483 -143484637 + L1Md_A LINE L1 1 5586 -297 1 677 9560 4 1 0 chr4 12145483 12146478 -143483642 + L1Md_A LINE L1 5587 6582 0 1 677 5307 159 149 2 chr4 12146492 12147462 -143482658 + Lx6 LINE L1 4659 5777 -103 1 677 1277 103 16 26 chr4 12147462 12147622 -143482498 + B2_Mm2 SINE B2 2 160 -35 1 677 414 0 0 0 chr4 12147622 12147668 -143482452 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1 677 1277 103 16 26 chr4 12147668 12147697 -143482423 + B2_Mm2 SINE B2 161 189 -6 1 677 5307 200 54 21 chr4 12147697 12148153 -143481967 + Lx6 LINE L1 5778 6238 -1222 1 677 207 0 0 0 chr4 12148156 12148179 -143481941 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 677 8599 32 0 0 chr4 12148179 12149434 -143480686 - L1Md_F2 LINE L1 -18 6564 5310 1 677 3124 228 24 0 chr4 12149433 12150057 -143480063 + Lx6 LINE L1 6223 6861 -599 1 677 540 0 0 0 chr4 12150092 12150152 -143479968 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 677 645 247 46 13 chr4 12150152 12150304 -143479816 + Lx6 LINE L1 6993 7149 -311 1 677 3870 174 20 10 chr4 12150319 12151011 -143479109 - RMER1B Other Other -4 1062 364 1 677 636 205 0 0 chr4 12151073 12151190 -143478930 + Lx6 LINE L1 7133 7249 -211 1 677 578 200 24 40 chr4 12151320 12151445 -143478675 - ORR1D1 LTR MaLR -2 372 250 1 677 2218 218 12 33 chr4 12151450 12151934 -143478186 - RMER19C LTR ERVK 0 611 138 1 677 1121 189 41 5 chr4 12151973 12152170 -143477950 - ORR1D1 LTR MaLR -170 204 1 1 677 347 298 220 0 chr4 12152273 12152528 -143477592 - MER33 DNA MER1_type -1 323 13 1 677 336 83 0 0 chr4 12152765 12152813 -143477307 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 677 272 229 40 30 chr4 12153352 12153451 -143476669 + L1M5 LINE L1 5709 5808 -432 1 677 2612 289 48 28 chr4 12154079 12154621 -143475499 - Lx8 LINE L1 -199 7274 6748 1 677 573 55 0 0 chr4 12154621 12154694 -143475426 + (CCA)n Simple_repeat Simple_repeat 2 74 0 1 677 2612 289 48 28 chr4 12154694 12154980 -143475140 - Lx8 LINE L1 -726 6747 6431 1 677 719 274 57 34 chr4 12154996 12155347 -143474773 - L1_Mur3 LINE L1 -531 5349 4991 1 677 839 212 56 19 chr4 12155355 12155571 -143474549 + MTD LTR MaLR 4 227 -192 1 677 2597 166 51 27 chr4 12155794 12156320 -143473800 - RLTR12A LTR ERVK -18 550 12 1 677 897 88 0 0 chr4 12156391 12156528 -143473592 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 677 193 325 24 36 chr4 12157463 12157546 -143472574 - L2b LINE L2 -4 3371 3290 1 677 221 348 53 72 chr4 12157797 12157949 -143472171 - MIR SINE MIR -96 166 18 1 677 933 213 67 13 chr4 12158501 12158725 -143471395 - Lx6 LINE L1 -41 7419 7184 1 677 1078 271 48 27 chr4 12159090 12159420 -143470700 - Lx8 LINE L1 -1 7472 7136 2 677 213 132 0 0 chr4 12159555 12159593 -143470527 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 677 592 210 12 0 chr4 12159608 12159770 -143470350 + (CA)n Simple_repeat Simple_repeat 2 165 0 2 677 305 179 42 56 chr4 12159826 12159897 -143470223 + HAL1-3A_ME LINE L1 1976 2045 -813 2 677 180 216 0 0 chr4 12160704 12160755 -143469365 + (TGG)n Simple_repeat Simple_repeat 1 51 0 2 677 206 319 0 0 chr4 12160767 12160836 -143469284 + (TGG)n Simple_repeat Simple_repeat 1 69 0 2 677 4182 78 5 24 chr4 12160885 12161479 -143468641 + RLTR19-int LTR ERVK 1430 2012 -4125 2 677 603 0 0 0 chr4 12162418 12162485 -143467635 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 677 330 174 131 41 chr4 12164258 12164345 -143465775 - PB1D9 SINE Alu -13 107 15 2 677 204 40 0 0 chr4 12165168 12165193 -143464927 + (A)n Simple_repeat Simple_repeat 1 25 0 2 677 465 344 165 8 chr4 12165224 12165582 -143464538 + L2a LINE L2 3013 3426 0 2 677 428 304 62 19 chr4 12166514 12166722 -143463398 - MER92B LTR ERV1 0 636 420 2 677 386 278 145 62 chr4 12166753 12166995 -143463125 - MER92B LTR ERV1 -363 273 12 2 677 836 271 17 34 chr4 12168903 12169140 -143460980 + B4A SINE B4 1 233 -59 2 677 559 259 43 36 chr4 12169141 12169281 -143460839 + RSINE1 SINE B4 7 147 -18 2 677 257 299 11 0 chr4 12169338 12169425 -143460695 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 677 417 39 0 0 chr4 12170936 12170987 -143459133 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 677 217 222 56 0 chr4 12170987 12171053 -143459067 + (TCTG)n Simple_repeat Simple_repeat 1 69 0 2 677 681 309 45 41 chr4 12171208 12171475 -143458645 + B4A SINE B4 20 287 -5 2 677 474 18 0 0 chr4 12172571 12172626 -143457494 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 677 396 279 114 9 chr4 12172650 12172755 -143457365 - PB1D10 SINE Alu 0 117 2 2 677 324 0 0 0 chr4 12173573 12173609 -143456511 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 677 741 271 6 6 chr4 12173811 12173971 -143456149 - B3 SINE B2 0 216 57 2 677 1049 266 39 8 chr4 12175300 12175554 -143454566 + B4A SINE B4 27 288 -4 2 677 752 115 9 0 chr4 12175573 12175686 -143454434 - RLTR15 LTR ERVK -245 114 1 2 677 1277 109 10 5 chr4 12176152 12176346 -143453774 + RLTR15 LTR ERVK 165 359 0 2 677 250 202 127 56 chr4 12176407 12176532 -143453588 - MLT1A1 LTR MaLR -3 405 271 2 677 234 0 0 0 chr4 12176565 12176591 -143453529 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 677 226 270 26 26 chr4 12176606 12176682 -143453438 - MLT1A1 LTR MaLR -212 162 87 2 677 13493 71 28 19 chr4 12176755 12178050 -143452070 - L1_Mus1 LINE L1 -1 6566 5303 2 677 1182 78 0 0 chr4 12178050 12178192 -143451928 - B1_Mm SINE Alu -5 142 1 2 677 13493 100 2 32 chr4 12178192 12179549 -143450571 - L1_Mus1 LINE L1 -581 5302 3954 2 677 657 118 0 0 chr4 12179549 12179642 -143450478 - MusHAL1 LINE L1 -1596 1116 1024 2 677 1220 197 99 34 chr4 12179643 12179937 -143450183 + RLTR46 LTR ERVK 1 313 -7 2 677 4621 141 169 6 chr4 12179946 12181684 -143448436 - L1_Mus1 LINE L1 -3651 2232 206 2 677 385 286 99 4 chr4 12182758 12182990 -143447130 + L1MA5 LINE L1 1987 2240 -4928 2 677 376 268 92 92 chr4 12183056 12183229 -143446891 + B4 SINE B4 106 278 -14 2 677 393 22 0 0 chr4 12183245 12183291 -143446829 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 677 308 273 30 20 chr4 12183378 12183479 -143446641 - MTEa LTR MaLR 0 379 278 2 677 934 297 104 51 chr4 12183579 12184358 -143445762 + L1MA5 LINE L1 3079 3895 -3269 2 677 487 213 21 0 chr4 12184417 12184511 -143445609 + B1_Mm SINE Alu 1 96 -51 2 677 575 168 8 0 chr4 12184512 12184631 -143445489 + GA-rich Low_complexity Low_complexity 3 122 0 2 677 722 229 181 53 chr4 12184631 12185068 -143445052 + L1MA5 LINE L1 3929 4421 -2743 2 677 1675 271 85 70 chr4 12185110 12186388 -143443732 + L1MA5 LINE L1 5730 7026 -295 2 677 231 227 66 13 chr4 12186524 12186600 -143443520 + L1MA5 LINE L1 7222 7301 -20 2 677 248 265 15 0 chr4 12186647 12186715 -143443405 + L1MA5 LINE L1 6209 6277 -23 2 677 276 207 66 44 chr4 12186745 12186836 -143443284 + RMER1B Other Other 971 1063 -3 2 677 444 175 5 73 chr4 12187792 12187983 -143442137 + C-rich Low_complexity Low_complexity 3 180 0 2 677 881 234 29 15 chr4 12188044 12188248 -143441872 + MTD LTR MaLR 1 207 -212 2 677 397 206 211 72 chr4 12188250 12188317 -143441803 + Lx9 LINE L1 7407 7499 -145 2 677 537 80 0 0 chr4 12188317 12188392 -143441728 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2 677 397 206 211 72 chr4 12188392 12188533 -143441587 + Lx9 LINE L1 7500 7643 -1 2 677 833 228 71 0 chr4 12188535 12188732 -143441388 + MTD LTR MaLR 194 404 -15 2 678 25 51 0 0 chr4 12190693 12190732 -143439388 + AT_rich Low_complexity Low_complexity 1 39 0 2 678 677 140 29 23 chr4 12190987 12191162 -143438958 + (CATCC)n Simple_repeat Simple_repeat 5 180 0 2 678 516 184 0 0 chr4 12191160 12191263 -143438857 + (CACCC)n Simple_repeat Simple_repeat 5 107 0 2 678 901 256 196 29 chr4 12191353 12191699 -143438421 - MTD LTR MaLR -13 406 3 2 678 229 274 0 31 chr4 12192138 12192202 -143437918 - B1_Mus2 SINE Alu -43 104 43 2 678 345 285 36 77 chr4 12192177 12192312 -143437808 - B1F1 SINE Alu -16 133 3 2 678 405 0 0 0 chr4 12192499 12192544 -143437576 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 678 629 116 0 21 chr4 12192544 12192641 -143437479 - B1_Mus2 SINE Alu -10 137 43 2 678 1033 201 36 113 chr4 12192629 12192966 -143437154 + RLTRETN_Mm LTR ERVK 12 322 0 2 678 537 104 39 0 chr4 12192966 12193029 -143437091 - B1_Mus1 SINE Alu -81 67 2 2 678 371 200 20 118 chr4 12193029 12193071 -143437049 - ID SINE ID -143 81 50 2 678 276 257 114 38 chr4 12194249 12194354 -143435766 - RSINE1 SINE B4 -12 153 41 2 678 23 0 0 0 chr4 12194603 12194626 -143435494 + AT_rich Low_complexity Low_complexity 1 23 0 2 678 834 325 29 26 chr4 12194791 12195141 -143434979 - Lx8 LINE L1 -163 7310 6960 2 678 585 372 7 0 chr4 12195143 12195296 -143434824 + RSINE1 SINE B4 6 159 -6 2 678 249 259 0 108 chr4 12195319 12195384 -143434736 + ID4_ SINE ID 5 62 -21 2 678 512 297 0 45 chr4 12197122 12197256 -143432864 + ID_B1 SINE B4 87 214 -10 2 678 347 364 29 29 chr4 12197453 12197589 -143432531 - MT2A LTR ERVL -71 462 327 2 678 658 294 98 40 chr4 12197589 12197979 -143432141 - RLTR18B LTR ERVK 0 616 88 2 678 367 275 0 59 chr4 12198224 12198309 -143431811 - RLTR18B LTR ERVK -536 80 1 2 678 447 240 86 72 chr4 12198310 12198337 -143431783 - MT2A LTR ERVL -202 331 310 2 678 3014 86 25 15 chr4 12198337 12198740 -143431380 + MTB_Mm LTR MaLR 1 407 0 2 678 447 240 86 72 chr4 12198740 12198809 -143431311 - MT2A LTR ERVL -224 309 230 2 678 237 132 0 0 chr4 12198809 12198847 -143431273 + (CAG)n Simple_repeat Simple_repeat 2 39 0 2 678 447 240 86 72 chr4 12198847 12198888 -143431232 - MT2A LTR ERVL -304 229 191 2 678 341 207 18 26 chr4 12198888 12198958 -143431162 + B1F SINE Alu 50 149 0 2 678 188 67 0 32 chr4 12198960 12198991 -143431129 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2 678 180 0 0 0 chr4 12200142 12200162 -143429958 + (A)n Simple_repeat Simple_repeat 1 20 0 2 678 314 270 42 59 chr4 12200309 12200427 -143429693 + MIR SINE MIR 92 207 -55 2 678 322 299 46 9 chr4 12200509 12200617 -143429503 - L2b LINE L2 -14 3361 3250 2 678 287 254 0 0 chr4 12200624 12200683 -143429437 - MER58D DNA MER1_type 0 386 328 2 678 222 332 46 36 chr4 12200692 12200886 -143429234 - L2b LINE L2 -661 2758 2563 2 678 366 263 50 50 chr4 12201733 12201853 -143428267 - MIRb SINE MIR -29 239 120 2 678 430 222 143 8 chr4 12201863 12202040 -143428080 + MLT2B1 LTR ERVL 2 209 -392 2 678 571 228 71 24 chr4 12202041 12202167 -143427953 + RSINE1 SINE B4 5 136 -29 2 678 503 269 36 60 chr4 12202165 12202331 -143427789 + MLT2B1 LTR ERVL 189 350 -170 2 678 1509 239 8 40 chr4 12202366 12202719 -143427401 - MTD LTR MaLR 0 419 78 2 678 308 218 25 13 chr4 12202801 12202880 -143427240 - L1M2 LINE L1 -746 5554 5475 2 678 402 139 0 0 chr4 12202954 12203026 -143427094 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 678 464 268 14 21 chr4 12205152 12205297 -143424823 + Tigger15a DNA TcMar 208 351 -364 2 678 271 193 23 0 chr4 12206325 12206413 -143423707 + (TATG)n Simple_repeat Simple_repeat 3 92 0 2 678 667 253 174 46 chr4 12206435 12206630 -143423490 - B4A SINE B4 -20 272 53 2 678 8262 65 1 16 chr4 12206639 12208066 -143422054 - L1_Mus1 LINE L1 -2 6565 5175 2 678 1101 101 0 0 chr4 12208065 12208214 -143421906 + L1_Mus1 LINE L1 5012 5160 -723 2 678 234 333 0 0 chr4 12208216 12208276 -143421844 - B4A SINE B4 -231 61 2 2 678 983 273 121 0 chr4 12208915 12209204 -143420916 - MTD LTR MaLR 0 419 96 2 678 439 273 9 43 chr4 12209204 12209319 -143420801 + PB1D10 SINE Alu 7 117 0 2 678 259 358 0 0 chr4 12209323 12209404 -143420716 + ID4 SINE ID 3 83 0 2 678 1057 286 79 21 chr4 12209520 12210162 -143419958 - L1MCb LINE L1 -5420 1331 561 2 678 2216 203 4 77 chr4 12210683 12211164 -143418956 + RLTR25B LTR ERVK 1 446 -582 2 678 669 166 12 152 chr4 12211685 12211856 -143418264 + RLTR25B LTR ERVK 620 766 -262 2 678 383 263 34 8 chr4 12211845 12211964 -143418156 + RLTR25B LTR ERVK 898 1019 -9 2 678 325 342 73 21 chr4 12212326 12212517 -143417603 - L1MCb LINE L1 -6304 447 247 2 678 387 0 0 0 chr4 12214970 12215013 -143415107 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 678 23 0 0 0 chr4 12215013 12215036 -143415084 + AT_rich Low_complexity Low_complexity 1 23 0 2 678 281 367 73 44 chr4 12215212 12215417 -143414703 + MLT1H1 LTR MaLR 38 248 -307 2 678 21 0 0 0 chr4 12215660 12215681 -143414439 + AT_rich Low_complexity Low_complexity 1 21 0 2 678 1012 122 6 51 chr4 12215878 12216034 -143414086 - B1_Mur3 SINE Alu 0 149 1 2 678 180 288 119 48 chr4 12216727 12216811 -143413309 - MIRc SINE MIR -59 209 120 2 678 546 16 0 0 chr4 12217318 12217381 -143412739 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 678 723 297 43 21 chr4 12217419 12217701 -143412419 - B4A SINE B4 -4 288 1 2 678 218 283 0 32 chr4 12218521 12218583 -143411537 - L2a LINE L2 0 3426 3367 2 678 3598 56 0 20 chr4 12219055 12219494 -143410626 + L1Md_F2 LINE L1 6141 6570 -12 2 678 369 0 0 0 chr4 12219683 12219724 -143410396 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 678 396 0 0 0 chr4 12219724 12219767 -143410353 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 678 549 218 0 0 chr4 12219975 12220099 -143410021 + (CATATA)n Simple_repeat Simple_repeat 4 127 0 2 678 651 306 98 15 chr4 12220568 12220833 -143409287 - LTR40b LTR ERVL -5 457 171 2 678 323 230 80 11 chr4 12221000 12221088 -143409032 + MamGypLTR1b LTR Gypsy 687 780 -2 2 678 3920 70 16 14 chr4 12221184 12221673 -143408447 - L1_Mus1 LINE L1 0 6567 6078 2 678 4547 77 3 0 chr4 12221673 12222464 -143407656 + L1_Mus1 LINE L1 5275 6067 -500 2 678 268 339 115 0 chr4 12222464 12222594 -143407526 + MIRb SINE MIR 106 250 -18 2 678 1658 228 73 18 chr4 12223012 12223409 -143406711 + MTD LTR MaLR 1 419 0 3 678 232 57 53 70 chr4 12224481 12224538 -143405582 + (TTTAA)n Simple_repeat Simple_repeat 3 58 0 3 678 357 24 0 0 chr4 12225168 12225210 -143404910 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 678 319 246 0 14 chr4 12225213 12225287 -143404833 - Lx9 LINE L1 -178 7466 7394 3 678 2832 85 0 3 chr4 12225314 12225668 -143404452 + L1_Mus2 LINE L1 6213 6565 -1 3 678 1737 151 142 3 chr4 12226255 12226587 -143403533 - ORR1B1 LTR MaLR 0 394 17 3 678 252 103 51 0 chr4 12226556 12226595 -143403525 - ORR1B1-int LTR MaLR -27 1936 1896 3 678 327 250 25 0 chr4 12227718 12227798 -143402322 + MLT1A1 LTR MaLR 21 102 -306 3 678 230 286 7 3 chr4 12227984 12228053 -143402067 + MLT1A1 LTR MaLR 245 346 -62 3 678 369 102 0 0 chr4 12228326 12228385 -143401735 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 678 687 301 48 39 chr4 12228397 12228604 -143401516 - B4 SINE B4 0 292 84 3 678 2023 248 94 19 chr4 12228803 12229505 -143400615 - Lx7 LINE L1 -22 7674 6789 3 678 275 291 63 0 chr4 12229505 12229584 -143400536 - B4 SINE B4 -207 85 2 3 678 186 217 93 35 chr4 12230008 12230094 -143400026 + MER5A DNA MER1_type 9 99 -90 3 678 182 205 26 0 chr4 12230319 12230358 -143399762 - MIRb SINE MIR -68 200 161 3 678 483 100 0 0 chr4 12230833 12230903 -143399217 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 678 21 89 0 0 chr4 12230916 12230972 -143399148 + AT_rich Low_complexity Low_complexity 1 56 0 3 678 752 359 80 34 chr4 12230992 12231139 -143398981 - Lx8 LINE L1 -2 7471 7327 3 678 417 54 0 0 chr4 12231139 12231195 -143398925 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 678 753 354 56 18 chr4 12231195 12231698 -143398422 - Lx9 LINE L1 -189 7455 6934 3 678 239 315 63 25 chr4 12231667 12231905 -143398215 - L1MA5 LINE L1 -1 6299 6053 3 678 736 269 45 2 chr4 12232133 12232321 -143397799 + B3A SINE B2 1 197 -19 3 678 201 299 92 65 chr4 12234984 12235097 -143395023 + MIRm SINE MIR 1 114 -148 3 678 537 16 0 0 chr4 12235111 12235173 -143394947 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 3 678 556 284 28 0 chr4 12235254 12235395 -143394725 - B1F1 SINE Alu -1 148 4 3 678 324 120 0 0 chr4 12236014 12236064 -143394056 + (GGGGA)n Simple_repeat Simple_repeat 2 51 0 3 678 218 149 0 41 chr4 12236069 12236118 -143394002 + GA-rich Low_complexity Low_complexity 3 49 0 3 678 237 139 23 0 chr4 12236235 12236278 -143393842 + MLT2B3 LTR ERVL 1 44 -512 3 678 6155 75 0 1 chr4 12236295 12237122 -143392998 - L1_Mm LINE L1 -3229 2654 1829 3 678 213 39 0 0 chr4 12237131 12237157 -143392963 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 678 467 266 136 8 chr4 12237167 12237292 -143392828 - B1_Mus2 SINE Alu -6 141 1 3 678 573 309 78 51 chr4 12237294 12237702 -143392418 + MLT2B3 LTR ERVL 55 552 -2 3 678 242 307 107 36 chr4 12237747 12237920 -143392200 - MIRb SINE MIR -73 195 3 3 678 205 338 104 0 chr4 12238368 12238445 -143391675 + L2b LINE L2 3273 3357 -18 3 678 305 312 82 25 chr4 12239107 12239265 -143390855 + Lx7 LINE L1 6945 7111 -585 3 678 1057 277 151 14 chr4 12239419 12239702 -143390418 - L1MD2 LINE L1 -207 6152 5815 3 678 495 48 0 0 chr4 12239702 12239764 -143390356 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 678 1057 277 151 14 chr4 12239764 12239964 -143390156 - L1MD2 LINE L1 -545 5814 5604 3 678 1378 95 25 40 chr4 12240534 12240732 -143389388 - B2_Mm2 SINE B2 0 195 1 3 678 764 258 108 0 chr4 12240756 12240950 -143389170 - Lx5 LINE L1 -7 7043 6829 3 678 288 239 169 0 chr4 12241462 12241533 -143388587 + RLTR25B LTR ERVK 1 83 -945 3 678 683 254 151 73 chr4 12241534 12241793 -143388327 + ORR1D2 LTR MaLR 92 370 0 3 678 1274 179 133 112 chr4 12242024 12242599 -143387521 + RLTR25B LTR ERVK 68 650 -453 3 678 1424 147 82 251 chr4 12242515 12243077 -143387043 + ORR1A3-int LTR MaLR 499 965 -998 3 678 597 145 48 164 chr4 12243052 12243217 -143386903 + RLTR25B LTR ERVK 620 765 -263 3 678 371 186 93 0 chr4 12243218 12243304 -143386816 + RLTR25B LTR ERVK 909 1002 -26 3 678 23 0 0 0 chr4 12243562 12243585 -143386535 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 460 251 147 18 chr4 12243734 12243904 -143386216 + B3A SINE B2 2 193 -5 3 678 189 0 0 0 chr4 12244942 12244963 -143385157 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 678 587 222 168 1 chr4 12246297 12246469 -143383651 - B3A SINE B2 -13 203 2 3 678 38870 30 0 0 chr4 12246807 12253225 -143376895 - L1Md_T LINE L1 0 6585 71 3 678 726 233 134 75 chr4 12253225 12253557 -143376563 - RLTR12B LTR ERVK -244 324 2 3 678 832 228 37 37 chr4 12253928 12254119 -143376001 - B3 SINE B2 -6 210 20 3 678 21 0 0 0 chr4 12254443 12254464 -143375656 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 707 113 17 0 chr4 12254807 12254922 -143375198 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 3 678 9585 90 10 12 chr4 12255007 12256418 -143373702 - MusHAL1 LINE L1 -627 2085 678 3 678 186 167 119 0 chr4 12256666 12256708 -143373412 + MIRb SINE MIR 133 179 -89 3 678 186 43 0 0 chr4 12256708 12256731 -143373389 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 678 264 30 0 0 chr4 12257524 12257557 -143372563 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 678 384 152 0 0 chr4 12257686 12257752 -143372368 + CT-rich Low_complexity Low_complexity 5 70 0 3 678 424 0 18 18 chr4 12257752 12257809 -143372311 + (TTCTC)n Simple_repeat Simple_repeat 5 61 0 3 678 195 69 0 0 chr4 12257812 12257841 -143372279 + (TCTCTG)n Simple_repeat Simple_repeat 6 34 0 3 678 442 265 175 0 chr4 12258091 12258260 -143371860 - B4A SINE B4 -92 200 2 3 678 279 0 0 0 chr4 12258574 12258605 -143371515 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 678 516 32 0 0 chr4 12258605 12258666 -143371454 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 678 400 268 124 54 chr4 12260410 12260651 -143369469 - LTR50 LTR ERVL -14 781 524 3 678 203 348 0 0 chr4 12261307 12261376 -143368744 + (CACCAT)n Simple_repeat Simple_repeat 6 74 0 3 678 224 200 0 0 chr4 12261332 12261372 -143368748 + (CCA)n Simple_repeat Simple_repeat 2 41 0 3 678 182 250 18 27 chr4 12262128 12262239 -143367881 + CT-rich Low_complexity Low_complexity 5 114 0 3 678 445 259 58 21 chr4 12263066 12263236 -143366884 + ORR1E LTR MaLR 14 188 -196 3 678 197 323 16 0 chr4 12263349 12263411 -143366709 - L3 LINE CR1 -767 3722 3660 3 678 452 267 29 0 chr4 12264443 12264548 -143365572 + ID_B1 SINE B4 86 193 -31 3 678 708 45 0 0 chr4 12264793 12264881 -143365239 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 678 373 341 127 0 chr4 12265118 12265244 -143364876 + PB1D7 SINE Alu 1 142 -7 3 678 237 65 0 0 chr4 12266332 12266363 -143363757 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 678 544 41 91 0 chr4 12268435 12268556 -143361564 + (TC)n Simple_repeat Simple_repeat 1 132 0 3 678 743 150 0 48 chr4 12268572 12268761 -143361359 + CT-rich Low_complexity Low_complexity 1 180 0 3 678 335 26 0 0 chr4 12268761 12268800 -143361320 + (TTC)n Simple_repeat Simple_repeat 3 41 0 3 678 525 49 37 0 chr4 12268800 12268881 -143361239 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 678 4101 178 43 66 chr4 12269385 12270340 -143359780 - RMER17B LTR ERVK -14 944 12 3 678 4899 61 48 14 chr4 12270340 12271034 -143359086 - L1_Mm LINE L1 -3873 2010 1294 3 678 1444 12 12 0 chr4 12271034 12271197 -143358923 + L1Md_F2 LINE L1 6403 6567 -15 3 678 383 189 0 0 chr4 12271197 12271219 -143358901 - L1VL1 LINE L1 -5345 1077 1056 3 678 556 328 48 44 chr4 12271254 12271503 -143358617 - ORR1E LTR MaLR -109 250 1 3 678 387 0 0 0 chr4 12271677 12271720 -143358400 + (CAAAT)n Simple_repeat Simple_repeat 5 47 0 3 678 4328 55 21 4 chr4 12271802 12272315 -143357805 - L1_Mus1 LINE L1 -2 6565 6044 3 678 1529 112 18 0 chr4 12272927 12273151 -143356969 + L1_Mm LINE L1 5048 5275 -608 3 678 434 257 102 81 chr4 12273609 12273795 -143356325 - ORR1E LTR MaLR -105 254 65 3 678 1344 212 84 76 chr4 12274933 12275109 -143355011 - ORR1D2 LTR MaLR 0 370 202 3 678 7929 85 9 13 chr4 12275109 12276170 -143353950 - Lx3_Mus LINE L1 -1 7008 5952 3 678 1344 212 84 76 chr4 12276170 12276360 -143353760 - ORR1D2 LTR MaLR -169 201 1 3 678 399 291 10 0 chr4 12276677 12276780 -143353340 - MER63A DNA AcHobo -58 152 49 3 678 797 265 61 43 chr4 12277333 12277613 -143352507 - L1_Mur3 LINE L1 -1714 4166 3882 3 678 1006 259 183 18 chr4 12277619 12277953 -143352167 - MTD LTR MaLR -12 407 19 3 678 934 265 54 24 chr4 12277974 12278301 -143351819 - L1_Mur3 LINE L1 -2227 3919 3585 3 678 438 339 55 35 chr4 12278270 12278560 -143351560 + Lx8 LINE L1 7167 7462 -11 3 678 22 0 0 0 chr4 12278618 12278640 -143351480 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 543 295 104 16 chr4 12279858 12280051 -143350069 - MER63A DNA AcHobo 0 210 1 3 678 187 328 0 32 chr4 12280810 12280873 -143349247 + L2a LINE L2 3355 3415 -11 3 678 216 97 0 0 chr4 12281245 12281276 -143348844 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 678 196 361 60 54 chr4 12281431 12281598 -143348522 + L2c LINE L2 2982 3149 -238 3 678 262 371 124 30 chr4 12281903 12282267 -143347853 - MLT1K LTR MaLR -29 566 169 3 678 384 279 40 32 chr4 12282299 12282425 -143347695 - L1MC3 LINE L1 -940 6845 6719 3 678 580 208 48 8 chr4 12282442 12282568 -143347552 + B1_Mur2 SINE Alu 19 149 0 3 678 349 262 23 23 chr4 12282600 12282686 -143347434 - L1MC3 LINE L1 -1118 6764 6679 3 678 549 278 48 82 chr4 12283093 12283301 -143346819 + Charlie12 DNA MER1_type 1 201 -2672 3 678 382 225 272 34 chr4 12283948 12284095 -143346025 + B3A SINE B2 1 182 -16 3 678 882 100 0 0 chr4 12284787 12284927 -143345193 + (CA)n Simple_repeat Simple_repeat 1 140 0 3 678 268 250 34 0 chr4 12284930 12285018 -143345102 + (CAGA)n Simple_repeat Simple_repeat 4 94 0 3 678 390 208 19 0 chr4 12285022 12285176 -143344944 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 678 372 224 18 0 chr4 12285241 12285411 -143344709 + (CA)n Simple_repeat Simple_repeat 2 174 0 3 678 386 208 7 0 chr4 12285452 12285596 -143344524 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 678 522 211 0 0 chr4 12285610 12285790 -143344330 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 678 185 35 69 0 chr4 12285813 12285842 -143344278 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 678 5442 116 51 20 chr4 12286110 12287111 -143343009 + L1VL1 LINE L1 194 1230 -2468 4 678 276 53 0 0 chr4 12287179 12287217 -143342903 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 4 678 1579 221 37 39 chr4 12287547 12287928 -143342192 - RMER19C LTR ERVK 0 611 232 4 678 638 58 11 0 chr4 12288214 12288301 -143341819 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 4 678 2759 59 45 18 chr4 12288511 12288795 -143341325 + MTB LTR MaLR 1 301 -99 4 678 1298 212 35 113 chr4 12288795 12289221 -143340899 + RLTR9C LTR ERVK 1 393 0 4 678 2759 59 45 18 chr4 12289221 12289317 -143340803 + MTB LTR MaLR 302 391 -9 4 678 31857 85 31 4 chr4 12289447 12294606 -143335514 + L1Md_F2 LINE L1 238 5586 -297 4 678 8315 51 10 4 chr4 12294606 12295583 -143334537 + L1Md_F2 LINE L1 5587 6569 -13 4 678 880 316 55 7 chr4 12295737 12296011 -143334109 - B4A SINE B4 -4 288 2 4 678 538 338 72 58 chr4 12296140 12296347 -143333773 - ORR1E LTR MaLR -160 210 1 4 678 3626 280 106 45 chr4 12296347 12296439 -143333681 - MTEa-int LTR MaLR -53 1527 1427 4 678 447 0 0 45 chr4 12296439 12296505 -143333615 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 4 678 3626 280 106 45 chr4 12296505 12297523 -143332597 - MTEa-int LTR MaLR -154 1426 357 4 678 753 12 0 0 chr4 12297523 12297609 -143332511 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 4 678 3626 280 106 45 chr4 12297609 12297815 -143332305 - MTEa-int LTR MaLR -1224 356 130 4 678 506 100 50 0 chr4 12297815 12297895 -143332225 - L1_Mus2 LINE L1 0 6566 6483 4 678 2658 49 12 0 chr4 12297895 12298222 -143331898 - IAPEY_LTR LTR ERVK 0 385 55 4 678 8925 79 2 4 chr4 12298222 12299845 -143330275 - L1_Mus2 LINE L1 -78 6488 4872 4 678 4019 90 4 17 chr4 12299845 12300378 -143329742 + L1Md_F2 LINE L1 6046 6571 -11 4 678 8925 98 2 8 chr4 12300378 12300586 -143329534 - L1_Mus2 LINE L1 -1012 4871 4664 4 678 15294 104 8 4 chr4 12300579 12302801 -143327319 + L1_Mus2 LINE L1 2419 4648 -1235 4 678 466 301 14 29 chr4 12302801 12302941 -143327179 - MTEa-int LTR MaLR -1442 138 1 4 678 309 276 9 28 chr4 12302941 12303049 -143327071 - MTEa LTR MaLR 0 379 274 4 678 216 0 0 0 chr4 12303063 12303087 -143327033 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 678 341 186 22 11 chr4 12303177 12303276 -143326844 - B1_Mur4 SINE Alu -3 147 46 4 678 1798 69 20 4 chr4 12303279 12303526 -143326594 - L1_Mm LINE L1 -1422 4461 4211 4 678 727 54 0 0 chr4 12303529 12303621 -143326499 - B1_Mm SINE Alu -54 93 2 4 678 285 235 0 0 chr4 12303530 12303632 -143326488 - ORR1B1-int LTR MaLR -770 739 638 4 678 387 73 0 0 chr4 12303740 12303795 -143326325 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 678 1915 102 3 68 chr4 12305545 12305840 -143324280 - ORR1A2 LTR MaLR -51 276 1 4 678 227 310 14 0 chr4 12306195 12306266 -143323854 - MIR SINE MIR -1 261 190 4 678 1203 341 80 26 chr4 12306908 12307449 -143322671 - L4 LINE RTE -1105 924 355 4 678 32 0 0 0 chr4 12308094 12308126 -143321994 + AT_rich Low_complexity Low_complexity 1 32 0 4 678 343 225 11 11 chr4 12308280 12308370 -143321750 - Lx7 LINE L1 -367 7329 7240 4 678 445 309 137 54 chr4 12308371 12308438 -143321682 + MTE2a LTR MaLR 78 158 -221 4 678 252 0 0 0 chr4 12308438 12308466 -143321654 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 678 445 309 137 54 chr4 12308466 12308603 -143321517 + MTE2a LTR MaLR 159 299 -80 4 678 1485 201 16 7 chr4 12308900 12309324 -143320796 + MT2B LTR ERVL 3 527 -74 4 678 238 111 0 0 chr4 12309309 12309345 -143320775 + MT2B LTR ERVL 488 523 -10 4 678 301 309 45 18 chr4 12309367 12309479 -143320641 + MERVL_2A-int LTR ERVL 544 658 -4338 4 678 8643 68 8 3 chr4 12309542 12310643 -143319477 - L1_Mm LINE L1 -223 5660 4554 4 678 3795 78 10 8 chr4 12310643 12311132 -143318988 + L1Md_F2 LINE L1 6093 6582 0 4 678 4395 212 100 19 chr4 12311437 12313277 -143316843 + Lx9 LINE L1 5429 7496 -148 4 678 685 161 25 0 chr4 12313274 12313392 -143316728 + Lx9 LINE L1 7016 7136 -508 4 678 533 183 0 0 chr4 12313394 12313514 -143316606 + Lx9 LINE L1 7520 7639 -5 4 678 1098 220 9 36 chr4 12313682 12313904 -143316216 + B3 SINE B2 1 216 0 4 678 329 275 0 8 chr4 12313972 12314070 -143316050 + CT-rich Low_complexity Low_complexity 23 120 0 4 678 954 71 0 0 chr4 12314070 12314197 -143315923 + (TTTC)n Simple_repeat Simple_repeat 3 129 0 4 678 1392 56 0 0 chr4 12314204 12314382 -143315738 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 678 329 275 0 8 chr4 12314382 12314396 -143315724 + polypyrimidine Low_complexity Low_complexity 2 15 0 4 678 1152 92 0 0 chr4 12314396 12314538 -143315582 - B1_Mus1 SINE Alu -6 142 1 4 678 925 280 64 11 chr4 12314539 12314821 -143315299 + MER89 LTR ERV1 263 559 0 4 678 409 378 24 28 chr4 12314821 12315069 -143315051 + MERVL_2A-int LTR ERVL 1315 1561 -3435 4 678 622 335 74 32 chr4 12315390 12315825 -143314295 + MERVL_2A-int LTR ERVL 2201 2653 -3108 4 678 2261 161 95 13 chr4 12317271 12317660 -143312460 - MTC LTR MaLR 0 421 1 4 678 902 280 9 92 chr4 12318200 12318535 -143311585 - L1_Rod LINE L1 -5 5842 5536 4 678 1159 142 236 54 chr4 12318623 12318790 -143311330 + ORR1B2 LTR MaLR 1 151 -216 4 678 387 0 0 0 chr4 12318790 12318833 -143311287 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 678 1159 142 236 54 chr4 12318833 12318962 -143311158 + ORR1B2 LTR MaLR 152 350 -17 4 678 363 164 19 25 chr4 12318971 12319063 -143311057 + ORR1B1 LTR MaLR 35 145 -249 4 678 3116 283 54 19 chr4 12319073 12319287 -143310833 - Lx8 LINE L1 -129 7344 7111 4 678 4611 49 2 25 chr4 12319287 12319847 -143310273 - L1Md_F2 LINE L1 0 6582 6036 4 678 3116 283 54 19 chr4 12319847 12320094 -143310026 - Lx8 LINE L1 -363 7110 6858 4 678 189 0 0 0 chr4 12320094 12320115 -143310005 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 678 3116 283 54 19 chr4 12320115 12320555 -143309565 - Lx8 LINE L1 -616 6857 6411 4 678 232 333 11 22 chr4 12320560 12320649 -143309471 - L1M2 LINE L1 -688 5603 5516 4 84 1497 39 66 22 chr4 12320686 12320868 -143309252 + B2_Mm1a SINE B2 2 191 -2 4 679 520 363 80 6 chr4 12320928 12321409 -143308711 + Lx8 LINE L1 6597 7112 -361 4 679 258 159 43 0 chr4 12321925 12321994 -143308126 + GA-rich Low_complexity Low_complexity 2 73 0 4 679 392 319 9 0 chr4 12322694 12322807 -143307313 - PB1D10 SINE Alu -1 116 3 4 679 220 71 0 0 chr4 12322827 12322855 -143307265 + (GAA)n Simple_repeat Simple_repeat 3 30 0 4 679 862 156 0 16 chr4 12322855 12322898 -143307222 + polypurine Low_complexity Low_complexity 2 43 0 4 679 1023 134 0 0 chr4 12322898 12323077 -143307043 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 679 862 156 0 16 chr4 12323077 12323215 -143306905 + polypurine Low_complexity Low_complexity 44 179 0 4 679 6970 108 19 9 chr4 12323297 12324246 -143305874 - RMER17B LTR ERVK 0 958 1 4 679 29927 37 1 0 chr4 12325373 12328989 -143301131 - L1Md_F LINE L1 -1093 4790 1170 4 679 5679 157 24 30 chr4 12328995 12330109 -143300011 - L1Md_F LINE L1 -5411 1205 99 4 679 2339 222 5 10 chr4 12330123 12330748 -143299372 - L1Md_F LINE L1 -5923 596 2 4 679 7232 41 10 0 chr4 12331063 12331863 -143298257 - RLTR13C2 LTR ERVK 0 808 1 4 679 245 376 0 10 chr4 12332036 12332138 -143297982 + MLT1A1 LTR MaLR 27 127 -281 4 679 268 206 159 0 chr4 12332241 12332304 -143297816 + MTE-int LTR MaLR 1474 1546 -34 4 679 1898 323 84 15 chr4 12332440 12333176 -143296944 + MTE-int LTR MaLR 753 1539 -41 4 679 264 267 0 186 chr4 12333608 12333732 -143296388 + MER5B DNA MER1_type 16 116 -62 4 679 2108 130 58 9 chr4 12333835 12334177 -143295943 + RMER19A LTR ERVK 1 359 -378 4 679 277 276 13 13 chr4 12334187 12334264 -143295856 + GA-rich Low_complexity Low_complexity 6 82 0 4 679 346 221 32 32 chr4 12334827 12334953 -143295167 + L1VL2 LINE L1 68 193 -6142 4 679 519 45 0 0 chr4 12335277 12335343 -143294777 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 679 378 0 0 0 chr4 12335343 12335384 -143294736 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 679 522 0 0 0 chr4 12335623 12335681 -143294439 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 4 679 696 197 133 10 chr4 12337023 12337218 -143292902 + Lx9 LINE L1 7421 7639 -5 4 679 274 352 28 0 chr4 12337288 12337359 -143292761 + B3 SINE B2 110 182 -34 4 679 270 136 0 0 chr4 12337362 12337406 -143292714 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 679 666 0 0 0 chr4 12337552 12337626 -143292494 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 4 679 1006 119 0 0 chr4 12337627 12337761 -143292359 - B1_Mus1 SINE Alu -12 136 3 4 679 1229 68 0 0 chr4 12338751 12338898 -143291222 - B1_Mus2 SINE Alu 0 147 1 4 679 2205 123 25 0 chr4 12338961 12339278 -143290842 + ORR1A2 LTR MaLR 1 325 -2 4 679 318 268 47 5 chr4 12339498 12339605 -143290515 - MTEa LTR MaLR -3 376 268 4 679 23 0 0 0 chr4 12341093 12341116 -143289004 + AT_rich Low_complexity Low_complexity 1 23 0 4 679 272 344 121 28 chr4 12341436 12341792 -143288328 - L2 LINE L2 -1120 2299 1911 4 679 24 0 0 0 chr4 12343333 12343357 -143286763 + AT_rich Low_complexity Low_complexity 1 24 0 4 679 1464 264 87 34 chr4 12343412 12343918 -143286202 - MT2A LTR ERVL 0 533 1 4 679 1700 211 65 11 chr4 12344014 12344368 -143285752 + MTEb LTR MaLR 4 376 -3 4 679 227 188 0 0 chr4 12345009 12345057 -143285063 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 679 440 374 83 37 chr4 12345159 12345675 -143284445 - L3 LINE CR1 -1223 3266 2727 4 679 556 254 103 15 chr4 12345682 12345886 -143284234 - ID_B1 SINE B4 -2 222 1 4 679 232 258 247 0 chr4 12346176 12346269 -143283851 - PB1D7 SINE Alu 0 120 5 4 679 2058 174 28 16 chr4 12347323 12347749 -143282371 + RMER10A LTR ERVL 5 435 -7 4 679 29 28 0 0 chr4 12347779 12347815 -143282305 + AT_rich Low_complexity Low_complexity 1 36 0 4 679 330 263 0 0 chr4 12347920 12348053 -143282067 + (TG)n Simple_repeat Simple_repeat 1 133 0 4 679 570 326 34 78 chr4 12348065 12348227 -143281893 - B4A SINE B4 -6 286 130 4 679 331 181 60 0 chr4 12348227 12348310 -143281810 - Lx9 LINE L1 0 7644 7557 4 679 570 326 34 78 chr4 12348310 12348440 -143281680 - B4A SINE B4 -163 129 7 4 679 309 276 108 65 chr4 12348534 12348627 -143281493 + B1F1 SINE Alu 1 97 -20 4 679 297 0 0 0 chr4 12349757 12349790 -143280330 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 679 198 0 0 0 chr4 12350018 12350040 -143280080 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4 679 597 129 17 8 chr4 12350383 12350500 -143279620 + GA-rich Low_complexity Low_complexity 3 120 0 4 679 305 274 86 37 chr4 12351075 12351258 -143278862 + MER110 LTR ERV1 319 491 0 4 679 483 48 0 0 chr4 12351361 12351423 -143278697 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 679 726 321 144 35 chr4 12354460 12354919 -143275201 + MTE-int LTR MaLR 68 576 -1004 5 679 563 284 138 32 chr4 12355018 12355236 -143274884 + MTE-int LTR MaLR 736 976 -604 5 679 532 318 13 23 chr4 12355313 12355517 -143274603 - MLT1A0 LTR MaLR -28 362 166 5 679 305 194 27 82 chr4 12355627 12355700 -143274420 - ID4 SINE ID -14 69 1 5 679 1156 262 134 19 chr4 12356241 12356436 -143273684 - MTD LTR MaLR 0 419 203 5 679 2432 93 15 6 chr4 12356436 12356760 -143273360 - ORR1A2 LTR MaLR 0 327 1 5 679 1156 262 134 19 chr4 12356760 12356937 -143273183 - MTD LTR MaLR -217 202 4 5 679 479 297 181 42 chr4 12357631 12358162 -143271958 + L2a LINE L2 2616 3194 -181 5 679 286 260 219 8 chr4 12358163 12358291 -143271829 - L2 LINE L2 -491 2928 2774 5 679 36694 31 0 0 chr4 12358300 12363912 -143266208 + L1Md_T LINE L1 2 5589 -297 5 679 9562 6 0 0 chr4 12363912 12364908 -143265212 + L1Md_T LINE L1 5590 6585 0 5 679 1224 262 62 11 chr4 12364982 12365356 -143264764 - L2 LINE L2 -715 2704 2312 5 679 534 326 102 22 chr4 12365582 12365896 -143264224 - MLT1A LTR MaLR -35 339 1 5 679 351 243 104 35 chr4 12365935 12366050 -143264070 - MLT-int LTR MaLR -71 1664 1542 5 679 189 74 0 0 chr4 12366338 12366365 -143263755 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 679 28551 88 3 5 chr4 12366527 12370585 -143259535 - L1VL1 LINE L1 -733 5150 1096 5 679 303 28 0 0 chr4 12370585 12370621 -143259499 + (CAT)n Simple_repeat Simple_repeat 1 36 0 5 679 5979 94 24 65 chr4 12370621 12371364 -143258756 - L1VL1 LINE L1 -5543 1095 396 5 679 213 354 115 7 chr4 12371370 12371518 -143258602 - L2a LINE L2 -309 3117 2954 5 679 474 304 5 8 chr4 12371838 12371964 -143258156 - PB1D10 SINE Alu -21 126 3 5 679 2526 65 15 24 chr4 12372814 12373144 -143256976 + IAPLTR2b LTR ERVK 1 327 0 5 679 10792 51 51 43 chr4 12373145 12374603 -143255517 + IAPEz-int LTR ERVK 9 1477 -5004 5 679 1925 85 0 0 chr4 12374604 12374850 -143255270 + IAPEz-int LTR ERVK 2252 2497 -5183 5 679 15036 52 9 3 chr4 12374849 12376662 -143253458 + IAPEz-int LTR ERVK 4656 6479 -2 5 679 2526 65 15 24 chr4 12376664 12376994 -143253126 + IAPLTR2b LTR ERVK 1 327 0 5 679 230 260 137 0 chr4 12379419 12379492 -143250628 + PB1D10 SINE Alu 2 84 -33 5 679 220 250 11 21 chr4 12380589 12380683 -143249437 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 679 655 217 126 43 chr4 12380698 12380953 -143249167 - L1MC2 LINE L1 -20 6324 6049 5 679 21 0 0 0 chr4 12381005 12381026 -143249094 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 297 0 0 0 chr4 12383143 12383176 -143246944 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 679 295 298 9 17 chr4 12383199 12383315 -143246805 + GA-rich Low_complexity Low_complexity 1 115 0 5 679 207 69 0 0 chr4 12383329 12383358 -143246762 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 679 300 225 42 14 chr4 12383418 12383490 -143246630 - B4 SINE B4 -123 169 96 5 679 471 225 0 75 chr4 12383514 12383634 -143246486 - B3A SINE B2 -5 193 83 5 679 384 277 0 12 chr4 12383712 12383796 -143246324 - B4 SINE B4 -207 85 3 5 679 30 0 0 0 chr4 12384401 12384431 -143245689 + AT_rich Low_complexity Low_complexity 1 30 0 5 679 21 57 0 0 chr4 12384457 12384492 -143245628 + AT_rich Low_complexity Low_complexity 1 35 0 5 679 349 291 28 76 chr4 12385721 12385866 -143244254 - MIRb SINE MIR -84 184 47 5 679 333 0 0 0 chr4 12386247 12386284 -143243836 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 679 441 0 0 0 chr4 12386284 12386332 -143243788 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 679 186 43 0 0 chr4 12387152 12387175 -143242945 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 679 206 329 93 33 chr4 12388109 12388260 -143241860 + L2a LINE L2 3267 3426 0 5 679 577 312 100 57 chr4 12389403 12389702 -143240418 - MLT1I LTR MaLR 0 411 100 5 679 27 29 0 0 chr4 12389940 12389974 -143240146 + AT_rich Low_complexity Low_complexity 1 34 0 5 679 307 314 57 8 chr4 12390351 12390473 -143239647 - MLT1A LTR MaLR -84 324 197 5 679 329 253 12 35 chr4 12390498 12390584 -143239536 - MLT1A LTR MaLR -279 95 12 5 679 405 298 38 12 chr4 12390995 12391187 -143238933 - B4 SINE B4 0 292 17 5 679 4227 8 0 0 chr4 12391513 12391983 -143238137 + L1Md_A LINE L1 5117 5586 -297 5 679 9167 5 0 0 chr4 12391983 12392979 -143237141 + L1Md_A LINE L1 5587 6582 0 5 679 570 326 149 27 chr4 12393579 12394029 -143236091 - MLT1D LTR MaLR 0 505 1 5 679 36321 48 0 3 chr4 12394554 12400238 -143229882 + L1Md_T LINE L1 1 5589 -297 5 679 8568 34 0 2 chr4 12400238 12401270 -143228850 + L1Md_T LINE L1 5590 6585 0 5 679 303 28 0 0 chr4 12401381 12401417 -143228703 + (TTA)n Simple_repeat Simple_repeat 3 38 0 5 679 187 282 12 71 chr4 12401993 12402077 -143228043 + MER5B DNA MER1_type 66 144 -34 5 679 26 0 0 0 chr4 12403806 12403832 -143226288 + AT_rich Low_complexity Low_complexity 1 26 0 5 679 852 232 0 42 chr4 12404273 12404489 -143225631 - B3 SINE B2 -7 209 3 5 679 612 314 22 14 chr4 12404589 12404864 -143225256 - L1M5 LINE L1 -2836 3310 3034 5 679 4745 164 56 36 chr4 12405040 12406026 -143224094 - Lx3C LINE L1 -2 6974 5970 5 679 259 301 149 11 chr4 12406023 12406198 -143223922 - L1M5 LINE L1 -3333 2813 2615 5 679 192 303 56 11 chr4 12406678 12406768 -143223352 - L2b LINE L2 -359 3016 2923 5 679 1681 211 30 34 chr4 12407692 12408099 -143222021 + MTD LTR MaLR 1 405 -14 5 679 21 0 0 0 chr4 12409278 12409299 -143220821 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 541 285 5 58 chr4 12409503 12409693 -143220427 - MT2A LTR ERVL -161 372 193 5 679 302 295 92 40 chr4 12409763 12409936 -143220184 - MTEa LTR MaLR -194 185 4 5 679 237 296 54 54 chr4 12411501 12411669 -143218451 - RMER1C Other Other -775 567 400 5 679 459 351 40 54 chr4 12411716 12412195 -143217925 - RMER1C Other Other -471 871 400 5 679 482 345 41 56 chr4 12412242 12412709 -143217411 - RMER1C Other Other -508 834 375 5 679 31 0 0 0 chr4 12412746 12412777 -143217343 + AT_rich Low_complexity Low_complexity 1 31 0 5 679 256 307 25 44 chr4 12413468 12413628 -143216492 + MamRep1161 DNA TcMar 395 551 -406 5 679 324 0 0 0 chr4 12414994 12415030 -143215090 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 679 819 291 21 10 chr4 12415470 12415705 -143214415 + B4A SINE B4 2 252 -40 5 679 831 256 35 9 chr4 12415736 12415968 -143214152 - MTE2b LTR MaLR -129 250 13 5 679 701 265 24 12 chr4 12415981 12416149 -143213971 - B3A SINE B2 -28 170 1 5 679 634 332 110 6 chr4 12416475 12416829 -143213291 + LTR16D LTR ERVL 205 595 -56 5 679 206 266 19 26 chr4 12417777 12417853 -143212267 + MIR SINE MIR 102 175 -87 5 679 260 376 126 5 chr4 12418047 12418261 -143211859 + MIRb SINE MIR 21 260 -8 5 679 397 280 10 10 chr4 12420312 12420413 -143209707 + RSINE1 SINE B4 2 102 -63 5 679 7240 244 56 15 chr4 12420436 12422136 -143207984 - Lx6 LINE L1 -4 7456 5688 5 679 10682 146 63 32 chr4 12422134 12422359 -143207761 - Lx6 LINE L1 -415 5465 5233 5 679 249 33 0 0 chr4 12422359 12422389 -143207731 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 679 10682 146 63 32 chr4 12422389 12424275 -143205845 - Lx6 LINE L1 -648 5232 3288 5 679 468 0 0 0 chr4 12424275 12424327 -143205793 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 5 679 10682 146 63 32 chr4 12424327 12424344 -143205776 - Lx6 LINE L1 -2593 3287 3271 5 679 2105 149 36 34 chr4 12424339 12424756 -143205364 - Lx6 LINE L1 -3100 2780 2363 5 679 256 282 0 40 chr4 12424759 12424820 -143205300 + RSINE1 SINE B4 90 149 -16 5 679 2049 142 107 142 chr4 12424820 12425363 -143204757 - RLTR28 LTR ERVL 0 524 1 5 679 256 282 0 40 chr4 12425363 12425375 -143204745 + RSINE1 SINE B4 150 160 -5 5 679 348 24 0 0 chr4 12425579 12425620 -143204500 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 679 197 65 32 0 chr4 12425884 12425915 -143204205 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 5 679 677 48 107 0 chr4 12426497 12426600 -143203520 + B1_Mus1 SINE Alu 35 148 0 5 679 180 125 0 0 chr4 12426908 12426940 -143203180 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 5 679 213 132 0 0 chr4 12426991 12427029 -143203091 + (GGA)n Simple_repeat Simple_repeat 3 40 0 5 679 200 297 0 39 chr4 12427054 12427131 -143202989 + GA-rich Low_complexity Low_complexity 1 74 0 5 679 486 0 0 0 chr4 12428187 12428241 -143201879 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 679 28 0 0 0 chr4 12428813 12428841 -143201279 + AT_rich Low_complexity Low_complexity 1 28 0 5 679 187 333 0 0 chr4 12429263 12429326 -143200794 + MER5A DNA MER1_type 13 75 -114 5 679 360 295 23 46 chr4 12431630 12431804 -143198316 - L2a LINE L2 -36 3390 3221 5 679 1006 286 74 89 chr4 12432101 12432820 -143197300 - Lx9 LINE L1 -1 7643 6936 5 679 1253 221 92 6 chr4 12432989 12433317 -143196803 + MTEb LTR MaLR 21 376 -3 5 679 205 374 95 0 chr4 12433750 12433897 -143196223 - MIRc SINE MIR -70 198 38 5 679 441 0 0 0 chr4 12433978 12434027 -143196093 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 679 973 251 76 33 chr4 12435176 12435452 -143194668 + B4A SINE B4 5 292 0 5 679 226 220 0 0 chr4 12435463 12435513 -143194607 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 679 181 220 40 0 chr4 12435533 12435583 -143194537 - MIR SINE MIR -134 128 77 5 679 429 20 0 0 chr4 12435589 12435639 -143194481 + (TATG)n Simple_repeat Simple_repeat 4 53 0 5 679 21 0 0 0 chr4 12435795 12435816 -143194304 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 274 350 69 10 chr4 12435848 12436050 -143194070 + MLT1K LTR MaLR 377 590 -5 5 679 441 0 0 0 chr4 12436153 12436202 -143193918 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 679 225 346 48 0 chr4 12436974 12437078 -143193042 + MIRb SINE MIR 144 252 -16 5 679 391 267 88 7 chr4 12438154 12438290 -143191830 + RMER15 LTR ERVL 415 561 -14 5 679 319 348 86 14 chr4 12440732 12440872 -143189248 - MER45A DNA Tip100 -17 161 12 5 679 354 45 0 0 chr4 12441260 12441304 -143188816 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 679 474 18 0 0 chr4 12441304 12441358 -143188762 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 679 2156 194 21 2 chr4 12442888 12443317 -143186803 - Lx LINE L1 0 6654 6218 5 679 22 0 0 0 chr4 12443602 12443624 -143186496 + AT_rich Low_complexity Low_complexity 1 22 0 5 679 216 86 0 0 chr4 12444571 12444606 -143185514 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 679 1133 113 0 6 chr4 12444608 12444786 -143185334 + (TCC)n Simple_repeat Simple_repeat 3 179 0 5 679 204 125 0 0 chr4 12446250 12446282 -143183838 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 679 249 236 54 27 chr4 12446676 12446750 -143183370 - B3A SINE B2 -122 76 1 6 679 269 286 19 93 chr4 12447522 12447686 -143182434 + MER102b DNA MER1_type 65 214 -127 6 679 192 228 17 34 chr4 12448341 12448400 -143181720 + MIR SINE MIR 78 135 -73 6 679 510 301 27 0 chr4 12449102 12449248 -143180872 + MLT1A1 LTR MaLR 258 407 -1 6 679 276 329 14 0 chr4 12451317 12451387 -143178733 - ID4 SINE ID -2 81 11 6 679 212 319 14 14 chr4 12451411 12451481 -143178639 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 679 363 353 129 19 chr4 12451481 12451744 -143178376 - B4A SINE B4 0 292 1 6 680 186 43 0 0 chr4 12452103 12452126 -143177994 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 6 680 663 260 28 42 chr4 12452167 12452384 -143177736 - B3 SINE B2 -1 215 2 6 680 346 280 86 0 chr4 12452414 12452507 -143177613 - PB1D10 SINE Alu -2 115 15 6 680 3986 199 58 5 chr4 12452572 12453371 -143176749 + MTC-int LTR MaLR 189 1029 -229 6 680 2166 78 68 0 chr4 12453375 12453670 -143176450 - ORR1A2 LTR MaLR -8 319 5 6 680 1069 109 60 56 chr4 12453672 12453906 -143176214 + MTC-int LTR MaLR 1023 1257 -1 6 680 1283 48 0 0 chr4 12456107 12456253 -143173867 + B1_Mus1 SINE Alu 1 146 -2 6 680 195 114 0 0 chr4 12456254 12456289 -143173831 + (A)n Simple_repeat Simple_repeat 1 35 0 6 680 542 63 31 21 chr4 12456375 12456472 -143173648 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 6 680 269 342 69 25 chr4 12456980 12457139 -143172981 - LTR78 LTR ERV1 -198 1106 941 6 680 1146 257 180 0 chr4 12457243 12457593 -143172527 + MLT2C2 LTR ERVL 3 415 -49 6 680 243 235 28 84 chr4 12457864 12457971 -143172149 + Charlie7 DNA MER1_type 41 141 -2471 6 680 1167 107 6 12 chr4 12457993 12458164 -143171956 - B2_Mm1a SINE B2 -22 171 2 6 680 344 277 76 15 chr4 12458413 12458545 -143171575 + Charlie7 DNA MER1_type 349 488 -2124 6 680 656 244 160 5 chr4 12458681 12458868 -143171252 - B3 SINE B2 0 216 1 6 680 734 202 0 6 chr4 12459464 12459628 -143170492 + CT-rich Low_complexity Low_complexity 4 166 0 6 680 468 0 0 0 chr4 12459994 12460046 -143170074 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 680 348 24 0 0 chr4 12460046 12460087 -143170033 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 680 225 0 0 0 chr4 12460169 12460194 -143169926 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 680 306 333 76 6 chr4 12462606 12462778 -143167342 - L1MD3 LINE L1 -2028 5967 5784 6 680 374 293 18 2 chr4 12462807 12462919 -143167201 + B1F SINE Alu 1 119 -1 6 680 666 272 82 0 chr4 12463358 12463553 -143166567 + B4A SINE B4 1 211 -81 6 680 240 35 0 0 chr4 12463604 12463633 -143166487 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 680 186 281 78 59 chr4 12463649 12463751 -143166369 - MIRc SINE MIR -2 266 163 6 680 180 0 0 0 chr4 12464166 12464186 -143165934 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 680 257 221 126 91 chr4 12466446 12466645 -143163475 + RMER17C LTR ERVK 29 234 -176 6 680 225 0 0 0 chr4 12466646 12466671 -143163449 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 680 186 71 0 0 chr4 12467628 12467656 -143162464 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 680 553 315 73 73 chr4 12467828 12468039 -143162081 + B4A SINE B4 60 271 -21 6 680 306 0 0 0 chr4 12468039 12468073 -143162047 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 680 553 315 73 73 chr4 12468073 12468094 -143162026 + B4A SINE B4 272 292 0 6 680 246 290 14 0 chr4 12468094 12468163 -143161957 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 680 197 108 27 0 chr4 12468340 12468377 -143161743 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 680 954 63 0 23 chr4 12468382 12468512 -143161608 - B1_Mus1 SINE Alu 0 148 22 6 680 198 0 0 0 chr4 12468717 12468739 -143161381 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 680 313 255 101 10 chr4 12469221 12469320 -143160800 + MIR SINE MIR 33 140 -68 6 680 342 0 0 0 chr4 12469470 12469508 -143160612 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 680 255 220 0 0 chr4 12470270 12470361 -143159759 + GA-rich Low_complexity Low_complexity 2 92 0 6 680 282 160 0 0 chr4 12470859 12470909 -143159211 + A-rich Low_complexity Low_complexity 1 50 0 6 680 919 51 17 0 chr4 12472403 12472521 -143157599 + B2_Mm2 SINE B2 31 150 -45 6 680 244 334 99 77 chr4 12472542 12472691 -143157429 + MER21B LTR ERV1 388 553 -310 6 680 1365 235 70 36 chr4 12472691 12473049 -143157071 - ORR1D2 LTR MaLR 0 370 1 6 680 244 334 99 77 chr4 12473049 12473223 -143156897 + MER21B LTR ERV1 554 718 -145 6 680 280 224 252 0 chr4 12473288 12473395 -143156725 - ERVL-E-int LTR ERVL -695 4972 4839 6 680 315 328 113 38 chr4 12473502 12473714 -143156406 + MLT1F-int LTR MaLR 759 986 -503 6 680 241 310 93 40 chr4 12473732 12473883 -143156237 + MLT1F-int LTR MaLR 1039 1197 -212 6 680 3478 84 13 4 chr4 12474233 12474685 -143155435 - L1_Mus3 LINE L1 -6 6632 6177 6 680 278 304 92 46 chr4 12477193 12477345 -143152775 - LFSINE_Vert SINE SINE -143 316 158 6 680 210 377 0 0 chr4 12478317 12478378 -143151742 - PB1D10 SINE Alu -45 72 12 6 680 257 279 48 16 chr4 12478431 12478493 -143151627 - B1F SINE Alu -74 75 12 6 680 257 279 48 16 chr4 12478546 12478608 -143151512 - B1F SINE Alu -74 75 12 6 680 257 279 48 16 chr4 12478661 12478723 -143151397 - B1F SINE Alu -74 75 12 6 680 2119 109 20 101 chr4 12479522 12479880 -143150240 - ORR1A4 LTR MaLR 0 329 1 6 680 396 0 0 0 chr4 12480761 12480805 -143149315 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 680 228 274 16 0 chr4 12480808 12480870 -143149250 + MER45A DNA Tip100 116 178 0 6 680 1993 103 4 11 chr4 12481126 12481400 -143148720 + Lx3A LINE L1 6699 6970 -11 6 680 306 0 0 0 chr4 12481402 12481436 -143148684 + (CAATA)n Simple_repeat Simple_repeat 2 35 0 6 680 528 323 42 0 chr4 12482169 12482336 -143147784 - MIR3 SINE MIR -3 205 32 6 680 194 75 36 54 chr4 12482575 12482631 -143147489 + A-rich Low_complexity Low_complexity 1 55 0 6 680 245 83 0 40 chr4 12482634 12482684 -143147436 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 6 680 344 272 52 42 chr4 12483758 12483854 -143146266 - ID_B1 SINE B4 -1 223 127 6 680 212 143 24 0 chr4 12483860 12483902 -143146218 + CT-rich Low_complexity Low_complexity 2 44 0 6 680 226 283 63 55 chr4 12483944 12484071 -143146049 - MIR SINE MIR -28 234 107 6 680 378 324 73 32 chr4 12484247 12484665 -143145455 + MLT1B LTR MaLR 11 501 -4 6 680 326 228 0 40 chr4 12485983 12486074 -143144046 - ID4 SINE ID -53 99 12 6 680 207 0 0 0 chr4 12486093 12486116 -143144004 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 680 730 301 92 20 chr4 12486154 12486405 -143143715 + B4A SINE B4 5 273 -19 6 680 369 353 0 35 chr4 12486406 12486649 -143143471 + (TATG)n Simple_repeat Simple_repeat 1 234 0 6 680 332 183 11 89 chr4 12486655 12486745 -143143375 + HAL1-3A_ME LINE L1 1975 2057 -801 6 680 26 0 0 0 chr4 12486814 12486840 -143143280 + AT_rich Low_complexity Low_complexity 1 26 0 6 680 196 343 28 28 chr4 12486962 12487034 -143143086 + L3b LINE CR1 354 425 -57 6 680 264 30 0 0 chr4 12488667 12488700 -143141420 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 680 291 122 0 0 chr4 12490050 12490099 -143140021 + (CCCCG)n Simple_repeat Simple_repeat 5 53 0 6 680 435 184 35 9 chr4 12490121 12490236 -143139884 + T-rich Low_complexity Low_complexity 1 118 0 6 680 423 0 0 0 chr4 12490975 12491022 -143139098 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 680 638 255 82 21 chr4 12491037 12491232 -143138888 + B3 SINE B2 9 210 -6 6 680 1988 153 65 131 chr4 12491481 12491803 -143138317 - MTC LTR MaLR -7 414 98 6 680 1118 122 0 0 chr4 12491803 12491951 -143138169 - B1_Mus1 SINE Alu 0 148 1 6 680 1988 153 65 131 chr4 12491951 12492071 -143138049 - MTC LTR MaLR -324 97 1 6 680 1049 265 16 86 chr4 12492245 12492559 -143137561 - B4A SINE B4 0 292 1 6 680 1581 175 96 3 chr4 12492827 12493120 -143137000 + ORR1B2 LTR MaLR 4 323 -44 6 680 728 218 7 0 chr4 12493123 12493265 -143136855 - Lx5 LINE L1 -286 6764 6622 6 680 1073 227 41 29 chr4 12493241 12493486 -143136634 + Lx5 LINE L1 6758 7005 -45 6 680 336 173 10 73 chr4 12493486 12493597 -143136523 + ORR1B2 LTR MaLR 313 411 -8 6 680 260 342 42 81 chr4 12494762 12495028 -143135092 + MIRm SINE MIR 1 260 -8 6 680 311 318 47 16 chr4 12495955 12496083 -143134037 + MIRb SINE MIR 5 136 -132 6 680 522 58 35 11 chr4 12496090 12496177 -143133943 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 6 680 294 282 23 34 chr4 12496261 12496349 -143133771 - MER82 DNA MER2_type -566 87 1 6 680 441 0 0 0 chr4 12497017 12497066 -143133054 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 680 22 0 0 0 chr4 12497912 12497934 -143132186 + AT_rich Low_complexity Low_complexity 1 22 0 6 680 320 345 65 35 chr4 12498049 12498221 -143131899 + MIR SINE MIR 7 188 -80 6 680 25 0 0 0 chr4 12499320 12499345 -143130775 + AT_rich Low_complexity Low_complexity 1 25 0 6 680 1836 199 86 99 chr4 12499376 12499923 -143130197 - Lx9 LINE L1 -4 7640 7101 6 680 470 200 0 10 chr4 12499900 12499996 -143130124 + Lx9 LINE L1 6633 6727 -917 6 680 974 216 34 13 chr4 12500004 12500239 -143129881 + Lx9 LINE L1 6736 6975 -669 1 680 236 362 48 79 chr4 12500905 12501094 -143129026 - L2c LINE L2 -90 3297 3115 2 680 450 0 0 0 chr4 12501331 12501381 -143128739 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 680 342 0 0 0 chr4 12501381 12501418 -143128702 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 680 577 123 9 9 chr4 12501418 12501525 -143128595 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 5 680 183 443 0 0 chr4 12502526 12502596 -143127524 - L2b LINE L2 -73 3302 3233 6 680 615 27 0 0 chr4 12504175 12504248 -143125872 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 680 461 255 9 18 chr4 12504304 12504416 -143125704 - PB1D10 SINE Alu 0 117 7 8 680 301 298 10 78 chr4 12504329 12504431 -143125689 - ID_B1 SINE B4 -51 173 79 9 680 23 0 0 0 chr4 12505751 12505774 -143124346 + AT_rich Low_complexity Low_complexity 1 23 0 1 680 287 291 139 42 chr4 12506500 12506665 -143123455 - MIRc SINE MIR -86 182 2 1 680 243 0 0 0 chr4 12506830 12506857 -143123263 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 680 801 253 0 27 chr4 12506883 12507070 -143123050 - B3A SINE B2 -16 182 1 1 680 797 352 81 31 chr4 12507071 12507490 -143122630 - MLT1F LTR MaLR -100 448 9 1 680 1031 320 53 17 chr4 12507644 12508000 -143122120 + MTEa LTR MaLR 1 369 -10 1 680 570 297 155 31 chr4 12509560 12509914 -143120206 - MLT1D LTR MaLR -55 450 53 1 680 2336 196 23 12 chr4 12509914 12510394 -143119726 - Lx5 LINE L1 -393 6657 6173 1 680 211 333 0 0 chr4 12510969 12511029 -143119091 + MIR SINE MIR 91 150 -112 1 680 285 29 0 0 chr4 12514072 12514106 -143116014 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 680 351 0 0 0 chr4 12514106 12514144 -143115976 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 680 6378 74 24 1 chr4 12514494 12516040 -143114080 + L1VL4 LINE L1 216 1801 -1758 2 680 335 25 0 0 chr4 12516181 12516221 -143113899 - U2 snRNA snRNA -148 40 1 2 680 405 110 24 12 chr4 12516249 12516332 -143113788 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 680 471 305 191 61 chr4 12516892 12517833 -143112287 + L2a LINE L2 2368 3422 -4 2 680 257 318 108 0 chr4 12518114 12518262 -143111858 + RSINE1 SINE B4 2 165 0 2 680 1268 17 0 38 chr4 12519703 12519889 -143110231 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 680 22 35 0 0 chr4 12520694 12520723 -143109397 + AT_rich Low_complexity Low_complexity 1 29 0 2 680 342 0 0 0 chr4 12520948 12520986 -143109134 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 680 504 0 0 0 chr4 12520986 12521042 -143109078 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 680 687 127 0 0 chr4 12521507 12521625 -143108495 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 680 867 257 40 20 chr4 12521656 12521938 -143108182 + MER33 DNA MER1_type 1 280 -44 3 680 589 280 148 33 chr4 12522318 12522588 -143107532 + LTR53 LTR ERVL 179 479 -40 3 680 247 353 0 40 chr4 12522707 12522813 -143107307 + L2b LINE L2 3291 3384 -3 3 680 820 170 48 6 chr4 12523244 12523410 -143106710 + MER121 Unknown Unknown 48 220 -192 3 680 218 364 89 19 chr4 12525224 12525381 -143104739 - MIRb SINE MIR -64 204 37 3 680 241 306 0 0 chr4 12526478 12526550 -143103570 + MIR SINE MIR 173 244 -18 3 680 484 291 111 99 chr4 12526817 12527160 -143102960 + ORR1E LTR MaLR 9 355 -4 3 680 1124 75 7 0 chr4 12527276 12527423 -143102697 + B1_Mus1 SINE Alu 1 148 0 3 680 716 302 27 2 chr4 12527578 12527923 -143102197 - L1MB5 LINE L1 -2 6178 5829 3 680 266 212 412 0 chr4 12529559 12529639 -143100481 + B1_Mur3 SINE Alu 2 114 -35 4 680 404 269 147 6 chr4 12529947 12530104 -143100016 + B3A SINE B2 4 182 -16 4 680 360 88 0 0 chr4 12530111 12530168 -143099952 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 680 1207 82 52 6 chr4 12530251 12530423 -143099697 - B2_Mm2 SINE B2 -11 184 5 4 680 231 114 0 0 chr4 12530788 12530823 -143099297 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 4 680 299 299 22 22 chr4 12530955 12531044 -143099076 - PB1D10 SINE Alu -27 90 2 4 680 265 175 99 12 chr4 12531270 12531351 -143098769 - Lx8 LINE L1 -7 7466 7379 4 680 2525 164 80 6 chr4 12531331 12531817 -143098303 - Lx4A LINE L1 -108 6950 6429 4 680 2561 107 43 20 chr4 12531843 12532066 -143098054 + L1_Mur2 LINE L1 5028 5253 -624 4 680 3996 61 4 4 chr4 12532066 12532574 -143097546 + L1Md_F2 LINE L1 6074 6581 -1 4 680 2561 107 43 20 chr4 12532574 12532789 -143097331 + L1_Mur2 LINE L1 5254 5476 -401 4 680 1093 321 15 47 chr4 12532791 12533283 -143096837 - Lx8 LINE L1 -641 7055 6592 5 680 261 258 0 61 chr4 12533520 12533586 -143096534 + L2c LINE L2 3298 3359 -28 5 680 561 265 78 5 chr4 12533628 12533833 -143096287 + Charlie20a DNA Charlie 379 598 -209 5 680 378 61 0 0 chr4 12533849 12533898 -143096222 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 680 347 312 0 10 chr4 12534118 12534215 -143095905 - PB1D10 SINE Alu -3 114 19 5 680 897 284 117 24 chr4 12534473 12534892 -143095228 - MLT1C LTR MaLR -9 458 1 5 680 33 0 0 0 chr4 12535813 12535846 -143094274 + AT_rich Low_complexity Low_complexity 1 33 0 5 680 275 316 34 37 chr4 12535942 12536297 -143093823 + L1M5 LINE L1 2699 3052 -3094 5 680 289 364 31 31 chr4 12536829 12536988 -143093132 - MIRb SINE MIR -55 213 55 5 680 3317 36 2 5 chr4 12537170 12537566 -143092554 + MTA_Mm LTR MaLR 1 395 -1 5 680 300 293 128 8 chr4 12537595 12537712 -143092408 + L1M5 LINE L1 4187 4317 -1829 5 680 679 346 83 65 chr4 12538674 12539424 -143090696 + L2a LINE L2 2539 3296 -79 6 680 326 107 18 0 chr4 12539674 12539730 -143090390 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 6 680 498 293 149 73 chr4 12541084 12541412 -143088708 - ORR1E LTR MaLR -6 353 1 6 680 1270 173 146 12 chr4 12542029 12542406 -143087714 + MT2A LTR ERVL 13 489 -44 6 680 456 200 0 0 chr4 12542417 12542512 -143087608 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 680 578 275 68 6 chr4 12542732 12542987 -143087133 - L1M1 LINE L1 -353 5821 5552 6 680 1034 252 137 14 chr4 12543453 12543800 -143086320 + MTE2a LTR MaLR 2 359 0 6 680 220 188 14 14 chr4 12544049 12544119 -143086001 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 680 231 338 116 7 chr4 12544526 12544672 -143085448 + MIRb SINE MIR 40 201 -67 6 680 1533 89 0 0 chr4 12545486 12545688 -143084432 + RMER17D2 LTR ERVK 5 206 -603 6 680 714 24 0 0 chr4 12546890 12546974 -143083146 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 7 680 22 70 0 0 chr4 12547049 12547092 -143083028 + AT_rich Low_complexity Low_complexity 1 43 0 7 680 585 0 0 0 chr4 12547652 12547717 -143082403 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 680 320 149 21 21 chr4 12548771 12548867 -143081253 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 7 680 398 294 175 40 chr4 12548989 12549417 -143080703 - L1M5 LINE L1 -1393 4753 4268 7 680 23 54 0 0 chr4 12549748 12549785 -143080335 + AT_rich Low_complexity Low_complexity 1 37 0 7 680 25 0 0 0 chr4 12549827 12549852 -143080268 + AT_rich Low_complexity Low_complexity 1 25 0 7 680 201 162 44 0 chr4 12549866 12549934 -143080186 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 680 1333 165 5 0 chr4 12550102 12550326 -143079794 - URR1B DNA MER1_type 0 225 1 7 680 411 345 67 33 chr4 12550786 12550931 -143079189 - L1MEc LINE L1 -1511 4808 4665 7 680 425 165 0 49 chr4 12550931 12551033 -143079087 - L1Md_F2 LINE L1 -1 6581 6485 8 680 411 345 67 33 chr4 12551033 12551187 -143078933 - L1MEc LINE L1 -1655 4664 4499 7 680 357 363 80 60 chr4 12551386 12551688 -143078432 - L1MEc LINE L1 -6020 380 73 7 680 24 53 0 0 chr4 12552098 12552136 -143077984 + AT_rich Low_complexity Low_complexity 1 38 0 8 680 374 312 35 71 chr4 12552808 12552977 -143077143 + RSINE1 SINE B4 3 165 0 8 680 2344 88 79 0 chr4 12553593 12553935 -143076185 + Lx2 LINE L1 6629 6997 0 8 680 236 277 0 29 chr4 12554998 12555102 -143075018 - Lx7 LINE L1 -18 7678 7578 8 680 862 281 96 19 chr4 12557249 12557572 -143072548 - ORR1E LTR MaLR -11 348 1 8 680 4431 162 67 72 chr4 12558305 12559211 -143070909 - RMER19B LTR ERVK 0 902 1 8 680 366 329 68 11 chr4 12559352 12559677 -143070443 - L1MB7 LINE L1 -187 5997 5644 8 680 1202 48 7 0 chr4 12559697 12559842 -143070278 - B1_Mus1 SINE Alu -2 146 1 8 680 474 18 0 0 chr4 12560586 12560641 -143069479 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 680 908 133 0 6 chr4 12560641 12560821 -143069299 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 680 908 239 9 24 chr4 12561995 12562205 -143067915 + B3 SINE B2 5 211 -5 9 680 320 271 48 85 chr4 12562247 12562412 -143067708 + MER2 DNA MER2_type 147 305 -40 9 680 378 0 0 0 chr4 12563104 12563146 -143066974 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 680 26 50 0 0 chr4 12564137 12564177 -143065943 + AT_rich Low_complexity Low_complexity 1 40 0 9 680 569 338 17 8 chr4 12564326 12564565 -143065555 - Lx8 LINE L1 -1063 6410 6170 9 680 22 0 0 0 chr4 12564589 12564611 -143065509 + AT_rich Low_complexity Low_complexity 1 22 0 9 680 1635 322 57 27 chr4 12564629 12565404 -143064716 + Lx8 LINE L1 6503 7300 -173 9 680 22 0 0 0 chr4 12565513 12565535 -143064585 + AT_rich Low_complexity Low_complexity 1 22 0 9 680 213 39 0 0 chr4 12566045 12566071 -143064049 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9 680 29 60 0 0 chr4 12566183 12566233 -143063887 + AT_rich Low_complexity Low_complexity 1 50 0 1 680 25 95 0 0 chr4 12567333 12567407 -143062713 + AT_rich Low_complexity Low_complexity 1 74 0 1 680 22 0 0 0 chr4 12568856 12568878 -143061242 + AT_rich Low_complexity Low_complexity 1 22 0 1 680 1574 251 29 5 chr4 12568930 12569339 -143060781 + MTD LTR MaLR 1 419 0 1 680 294 29 0 0 chr4 12570306 12570341 -143059779 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 680 522 298 78 0 chr4 12572668 12572859 -143057261 + ID_B1 SINE B4 3 208 -16 1 680 204 40 0 0 chr4 12572873 12572898 -143057222 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1 680 423 0 0 0 chr4 12573585 12573632 -143056488 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 680 890 278 55 46 chr4 12573699 12573863 -143056257 + Lx6 LINE L1 7104 7285 -175 1 680 1877 117 20 16 chr4 12573863 12574167 -143055953 - Lx2 LINE L1 -4 6993 6689 1 680 890 278 55 46 chr4 12574167 12574330 -143055790 + Lx6 LINE L1 7286 7434 -26 1 680 490 15 0 29 chr4 12574356 12574425 -143055695 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 1 680 1839 35 26 0 chr4 12574475 12574702 -143055418 - L1Md_F3 LINE L1 -1 6583 6351 1 680 309 288 79 40 chr4 12574798 12574975 -143055145 + MER53 DNA hAT 1 184 -9 1 680 210 240 20 0 chr4 12575380 12575430 -143054690 + (CATG)n Simple_repeat Simple_repeat 4 54 0 1 680 819 339 32 7 chr4 12575431 12575710 -143054410 - B4A SINE B4 -6 286 1 1 680 273 327 172 20 chr4 12577314 12577469 -143052651 + B3A SINE B2 3 182 -16 1 680 271 136 17 17 chr4 12578076 12578136 -143051984 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 680 337 277 54 113 chr4 12579451 12579672 -143050448 + L1MD1 LINE L1 4765 4985 -1161 1 680 609 52 0 0 chr4 12579672 12579749 -143050371 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 680 337 277 54 113 chr4 12579749 12579898 -143050222 + L1MD1 LINE L1 4986 5113 -1033 1 680 836 247 144 73 chr4 12579941 12580282 -143049838 + MTE2a LTR MaLR 1 365 -14 1 680 452 233 25 121 chr4 12580381 12580485 -143049635 + L1MD1 LINE L1 5254 5348 -894 1 680 954 121 0 14 chr4 12580485 12580627 -143049493 + B1_Mus1 SINE Alu 2 141 -7 1 680 452 233 25 121 chr4 12580627 12580761 -143049359 + L1MD1 LINE L1 5349 5469 -773 1 680 327 288 53 18 chr4 12580947 12581060 -143049060 + PB1D10 SINE Alu 1 117 0 1 680 206 281 18 0 chr4 12581377 12581434 -143048686 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 680 681 261 93 25 chr4 12581515 12581719 -143048401 - B4A SINE B4 -74 218 1 1 680 479 289 106 21 chr4 12581719 12582002 -143048118 + L1MD1 LINE L1 5922 6228 -14 1 681 220 345 48 48 chr4 12584890 12585015 -143045105 - MIRb SINE MIR -112 156 32 1 681 378 42 0 0 chr4 12586759 12586807 -143043313 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 681 277 337 75 45 chr4 12587410 12587609 -143042511 + MIR SINE MIR 31 235 -27 1 681 351 291 12 6 chr4 12588159 12588325 -143041795 + L1MA4 LINE L1 5722 5888 -412 1 681 1277 230 33 72 chr4 12588514 12588903 -143041217 - ORR1D1 LTR MaLR 0 374 1 1 681 431 313 13 20 chr4 12588974 12589127 -143040993 - MER3 DNA MER1_type -53 156 5 1 681 3729 246 84 43 chr4 12591477 12593147 -143036973 + Lx9 LINE L1 4183 5927 -1717 1 681 251 256 149 11 chr4 12593163 12593250 -143036870 - RMER20A LTR ERVK 0 516 418 1 681 1209 200 12 39 chr4 12593247 12593515 -143036605 - RMER20A LTR ERVK -42 474 151 1 681 2124 200 41 64 chr4 12593538 12594104 -143036016 - RLTR31_Mur LTR ERVK 0 553 1 1 681 859 235 22 11 chr4 12594104 12594289 -143035831 + B3 SINE B2 28 214 -2 1 681 310 276 0 39 chr4 12597359 12597461 -143032659 + CT-rich Low_complexity Low_complexity 5 102 0 1 681 6831 185 48 47 chr4 12599534 12600136 -143029984 + L1_Mur2 LINE L1 663 1258 -5828 1 681 423 0 0 0 chr4 12600136 12600183 -143029937 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 681 6831 119 22 40 chr4 12600183 12601449 -143028671 + L1_Mur2 LINE L1 1259 2494 -3383 1 681 1835 203 85 76 chr4 12601515 12602043 -143028077 + MT2A LTR ERVL 1 533 0 1 681 203 204 47 28 chr4 12602402 12602508 -143027612 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 681 633 157 5 43 chr4 12603423 12603609 -143026511 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 681 244 296 111 53 chr4 12603640 12603811 -143026309 - B3A SINE B2 -16 182 2 1 681 270 0 0 0 chr4 12604035 12604065 -143026055 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 681 1094 337 54 107 chr4 12604078 12604650 -143025470 - MER21B LTR ERV1 -48 815 274 1 681 620 283 25 12 chr4 12605206 12605361 -143024759 - MLT1C LTR MaLR -1 623 351 1 681 242 250 14 68 chr4 12605361 12605434 -143024686 + B1F1 SINE Alu 1 69 -80 1 681 3348 30 5 5 chr4 12605905 12606301 -143023819 + MTA_Mm LTR MaLR 1 396 0 1 681 462 18 0 0 chr4 12607054 12607109 -143023011 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 681 552 243 78 65 chr4 12607110 12607264 -143022856 - B3A SINE B2 -42 156 1 1 681 2097 79 4 4 chr4 12607956 12608237 -143021883 - L1_Mus2 LINE L1 0 6566 6286 1 681 180 213 26 26 chr4 12611610 12611687 -143018433 + (TATG)n Simple_repeat Simple_repeat 4 80 0 1 681 31 0 0 0 chr4 12611871 12611902 -143018218 + AT_rich Low_complexity Low_complexity 1 31 0 1 681 201 196 0 19 chr4 12612481 12612533 -143017587 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 681 224 179 30 0 chr4 12612541 12612608 -143017512 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 1 681 348 24 0 0 chr4 12612618 12612659 -143017461 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 681 441 0 0 0 chr4 12613547 12613596 -143016524 + (CAAAT)n Simple_repeat Simple_repeat 3 51 0 1 681 1009 286 4 11 chr4 12613725 12614001 -143016119 + RMER1B Other Other 1 274 -792 1 681 21662 59 6 1 chr4 12613998 12616925 -143013195 + L1_Mm LINE L1 2643 5586 -297 1 681 7436 70 11 4 chr4 12616925 12617902 -143012218 + L1Md_F2 LINE L1 5587 6570 -12 1 681 21662 59 6 1 chr4 12617902 12617914 -143012206 + L1_Mm LINE L1 5587 5597 -286 1 681 3489 212 48 119 chr4 12618024 12619641 -143010479 + RMER1A Other Other 1 1027 -3 1 681 779 293 5 5 chr4 12619978 12620184 -143009936 - B3 SINE B2 -10 206 1 1 681 266 204 0 0 chr4 12620415 12620469 -143009651 + ORR1B1-int LTR MaLR 496 549 -960 1 681 1930 172 59 3 chr4 12620468 12620807 -143009313 - ORR1C1 LTR MaLR -20 358 1 1 681 795 289 126 13 chr4 12620807 12621178 -143008942 - RMER5 LTR ERV1 -69 465 53 1 681 246 300 28 14 chr4 12621679 12621750 -143008370 - ID4 SINE ID -4 79 8 1 681 1798 159 0 122 chr4 12621988 12622390 -143007730 + RLTR11B LTR ERVK 1 353 -100 1 681 7829 127 1 1 chr4 12622390 12623712 -143006408 - L1_Mm LINE L1 -1821 4062 2740 1 681 3411 97 12 38 chr4 12623712 12624271 -143005849 + L1_Mm LINE L1 4059 4603 -1280 1 681 254 222 16 16 chr4 12624299 12624363 -143005757 + MIRb SINE MIR 117 180 -88 1 681 233 240 39 26 chr4 12626838 12626915 -143003205 + CT-rich Low_complexity Low_complexity 4 81 0 1 681 358 355 111 20 chr4 12626949 12627202 -143002918 + L1M5 LINE L1 2331 2606 -3540 1 681 359 348 89 110 chr4 12627333 12627624 -143002496 + LTR16A1 LTR ERVL 16 300 -156 1 681 333 155 0 0 chr4 12628085 12628143 -143001977 + CT-rich Low_complexity Low_complexity 5 62 0 1 681 186 237 53 0 chr4 12628213 12628251 -143001869 + MIRc SINE MIR 83 122 -146 1 681 1245 96 0 0 chr4 12628363 12628541 -143001579 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 1 681 525 104 0 0 chr4 12628541 12628618 -143001502 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 1 681 24 77 0 0 chr4 12628855 12628907 -143001213 + AT_rich Low_complexity Low_complexity 1 52 0 1 681 504 0 0 0 chr4 12629110 12629166 -143000954 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 681 210 150 0 0 chr4 12629169 12629209 -143000911 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 1 681 828 18 27 0 chr4 12629236 12629346 -143000774 + (GA)n Simple_repeat Simple_repeat 2 114 0 1 681 228 188 0 0 chr4 12629506 12629570 -143000550 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 681 26 0 0 0 chr4 12629616 12629642 -143000478 + AT_rich Low_complexity Low_complexity 1 26 0 1 681 186 103 0 0 chr4 12629650 12629679 -143000441 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 681 527 270 19 87 chr4 12629734 12629941 -143000179 - B3A SINE B2 -1 197 5 1 681 6899 42 1 1 chr4 12629966 12630842 -142999278 - L1Md_F2 LINE L1 -3 6579 5704 1 681 28 0 0 0 chr4 12630857 12630885 -142999235 + AT_rich Low_complexity Low_complexity 1 28 0 1 681 322 284 91 0 chr4 12630885 12630973 -142999147 + PB1D10 SINE Alu 12 107 -10 1 681 1213 204 19 23 chr4 12631011 12631267 -142998853 - Lx4B LINE L1 -7 7051 6797 1 681 820 199 66 0 chr4 12631280 12631476 -142998644 - L1_Mur2 LINE L1 -1039 4838 4630 1 681 1064 180 19 5 chr4 12631481 12631693 -142998427 - Lx4B LINE L1 -279 6779 6565 1 681 10428 159 74 7 chr4 12631700 12633362 -142996758 - L1_Mur2 LINE L1 -1042 4835 3050 1 681 195 100 0 0 chr4 12633362 12633392 -142996728 + (CTG)n Simple_repeat Simple_repeat 1 30 0 1 681 1032 0 23 0 chr4 12633393 12633521 -142996599 + (TTC)n Simple_repeat Simple_repeat 2 132 0 1 681 10428 159 74 7 chr4 12633521 12634048 -142996072 - L1_Mur2 LINE L1 -2828 3049 2500 1 681 39463 5 0 0 chr4 12634079 12640655 -142989465 - L1Md_A LINE L1 0 6582 7 1 681 30368 75 21 4 chr4 12640656 12642865 -142987255 - L1Md_F2 LINE L1 -22 6560 4205 1 681 432 0 0 0 chr4 12642865 12642913 -142987207 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 681 225 0 0 0 chr4 12642919 12642944 -142987176 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 681 30368 108 41 12 chr4 12642944 12646883 -142983237 - L1Md_F2 LINE L1 -1684 4199 273 1 681 1596 168 22 0 chr4 12646881 12647196 -142982924 - L1_Mur2 LINE L1 -3362 2515 2194 1 681 2161 145 33 12 chr4 12647185 12647860 -142982260 - L1_Mur2 LINE L1 -4313 1564 882 1 681 22 35 0 0 chr4 12648414 12648443 -142981677 + AT_rich Low_complexity Low_complexity 1 29 0 1 681 302 211 0 34 chr4 12648702 12648761 -142981359 + B1_Mur4 SINE Alu 4 60 -90 1 681 630 227 6 22 chr4 12648761 12648941 -142981179 + GA-rich Low_complexity Low_complexity 1 177 0 1 681 455 168 0 17 chr4 12648949 12649064 -142981056 + (CAGAGA)n Simple_repeat Simple_repeat 4 116 0 1 681 473 165 32 21 chr4 12649336 12649429 -142980691 + RMER19C LTR ERVK 1 94 -517 1 681 7045 76 8 2 chr4 12649430 12650778 -142979342 - L1_Mus2 LINE L1 -1 6565 5206 2 681 1290 246 54 176 chr4 12650808 12651399 -142978721 + RMER19C LTR ERVK 93 611 0 1 681 634 295 29 0 chr4 12651430 12651569 -142978551 + RSINE1 SINE B4 3 145 -20 2 681 251 300 18 35 chr4 12651966 12652080 -142978040 - L1MC4 LINE L1 -1215 6827 6716 2 681 27 62 0 0 chr4 12654162 12654210 -142975910 + AT_rich Low_complexity Low_complexity 1 48 0 2 681 1446 190 24 62 chr4 12654535 12654955 -142975165 - Lx9 LINE L1 -8 7636 7233 2 681 832 288 42 5 chr4 12655322 12655538 -142974582 - B4A SINE B4 -13 279 56 2 681 353 299 126 51 chr4 12656302 12656578 -142973542 - MTEb LTR MaLR 0 379 65 2 681 199 292 27 40 chr4 12658401 12658476 -142971644 + L2a LINE L2 3349 3422 -4 2 681 23 0 0 0 chr4 12659683 12659706 -142970414 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 294 325 114 73 chr4 12660455 12660578 -142969542 - PB1D10 SINE Alu -18 129 2 2 681 7506 150 14 6 chr4 12661002 12662323 -142967797 - Lx2B LINE L1 -14 6986 5656 2 681 1987 155 14 0 chr4 12662321 12662683 -142967437 + Lx2B LINE L1 5247 5613 -264 2 681 723 228 96 23 chr4 12663334 12663554 -142966566 - Lx8 LINE L1 -349 7124 6889 2 681 822 252 102 34 chr4 12663720 12664181 -142965939 + Lx8 LINE L1 6529 7089 -384 2 681 414 0 0 0 chr4 12664435 12664481 -142965639 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 2 681 461 238 158 56 chr4 12664504 12664700 -142965420 + B3A SINE B2 1 216 0 2 681 24 32 0 0 chr4 12664929 12664960 -142965160 + AT_rich Low_complexity Low_complexity 1 31 0 2 681 255 390 29 0 chr4 12665026 12665131 -142964989 + PB1D7 SINE Alu 5 112 -8 2 681 355 161 8 33 chr4 12665376 12665498 -142964622 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 681 226 318 0 0 chr4 12665670 12665736 -142964384 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 681 283 322 101 35 chr4 12666025 12666207 -142963913 + MIRb SINE MIR 6 206 -62 2 681 3002 164 8 9 chr4 12666867 12667395 -142962725 - RLTR11A2 LTR ERVK 0 527 1 2 681 261 155 0 0 chr4 12667671 12667729 -142962391 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 681 438 20 0 0 chr4 12667729 12667780 -142962340 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 681 188 289 0 0 chr4 12667857 12667902 -142962218 + MIR SINE MIR 215 259 -3 2 681 649 129 8 8 chr4 12669047 12669164 -142960956 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 2 681 449 220 11 28 chr4 12669126 12669308 -142960812 + CT-rich Low_complexity Low_complexity 2 180 0 2 681 207 256 0 0 chr4 12669308 12669347 -142960773 + polypyrimidine Low_complexity Low_complexity 1 39 0 2 681 256 300 89 18 chr4 12670709 12670821 -142959299 + PB1D9 SINE Alu 1 120 0 2 681 264 218 0 0 chr4 12670822 12670909 -142959211 + GA-rich Low_complexity Low_complexity 4 90 0 2 681 386 293 0 0 chr4 12671061 12671143 -142958977 - ID_B1 SINE B4 -27 197 116 2 681 30 45 0 0 chr4 12671770 12671814 -142958306 + AT_rich Low_complexity Low_complexity 1 44 0 2 681 315 49 0 0 chr4 12672500 12672541 -142957579 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 681 237 83 0 0 chr4 12672541 12672576 -142957544 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 681 419 48 16 0 chr4 12673679 12673741 -142956379 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 2 681 436 234 61 46 chr4 12673763 12673916 -142956204 - ORR1E LTR MaLR -12 358 219 2 681 357 367 144 31 chr4 12675445 12675771 -142954349 + MLT1K LTR MaLR 143 505 -90 2 681 1486 122 69 0 chr4 12676142 12676430 -142953690 + L1_Mur1 LINE L1 3004 3311 -2575 2 681 335 164 0 0 chr4 12676430 12676497 -142953623 + L1_Mm LINE L1 3899 3965 -1918 2 681 650 149 14 34 chr4 12676497 12676643 -142953477 + Lx4B LINE L1 6911 7053 -5 2 681 301 209 11 21 chr4 12676647 12676723 -142953397 + GA-rich Low_complexity Low_complexity 3 79 0 2 681 1170 117 0 0 chr4 12676723 12676902 -142953218 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 681 301 209 11 21 chr4 12676902 12676918 -142953202 + polypurine Low_complexity Low_complexity 80 94 0 2 681 1612 199 125 11 chr4 12678643 12679019 -142951101 - MTD LTR MaLR 0 419 1 2 681 460 293 99 54 chr4 12679629 12679871 -142950249 + MER2 DNA MER2_type 85 337 -8 2 681 362 287 61 37 chr4 12679965 12680128 -142949992 - MER53 DNA hAT -1 192 26 2 681 395 277 39 39 chr4 12679991 12680145 -142949975 + MER53 DNA hAT 38 191 -2 2 681 398 281 70 8 chr4 12680159 12680288 -142949832 - B1F SINE Alu -11 138 2 2 681 333 0 0 0 chr4 12680997 12681034 -142949086 + (A)n Simple_repeat Simple_repeat 1 37 0 2 681 2368 132 26 14 chr4 12681092 12681507 -142948613 - Lx2 LINE L1 -8 6989 6570 2 681 28 79 0 0 chr4 12681615 12681678 -142948442 + AT_rich Low_complexity Low_complexity 1 63 0 2 681 1738 176 78 14 chr4 12681847 12682192 -142947928 - ORR1B2 LTR MaLR 0 367 1 2 681 3965 63 42 11 chr4 12683218 12683761 -142946359 - LTRIS2 LTR ERV1 0 564 5 2 681 430 305 76 23 chr4 12684603 12684774 -142945346 + MT2A LTR ERVL 286 465 -68 2 681 401 189 45 19 chr4 12684780 12684936 -142945184 + (TA)n Simple_repeat Simple_repeat 1 160 0 2 681 231 36 0 0 chr4 12685135 12685163 -142944957 + (G)n Simple_repeat Simple_repeat 1 28 0 2 681 273 98 0 0 chr4 12685159 12685200 -142944920 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 681 4836 46 31 2 chr4 12686344 12686952 -142943168 + Lx3_Mus LINE L1 6384 7009 0 2 681 659 300 108 99 chr4 12687288 12687640 -142942480 + MLT1B LTR MaLR 3 357 -33 2 681 278 339 136 50 chr4 12687989 12688247 -142941873 + L2 LINE L2 2674 2953 -466 2 681 613 179 14 14 chr4 12689069 12689216 -142940904 + T-rich Low_complexity Low_complexity 3 149 0 2 681 1178 68 0 0 chr4 12689221 12689367 -142940753 - B1_Mus1 SINE Alu -1 147 2 2 681 391 305 85 13 chr4 12692108 12692261 -142937859 - MER103 DNA DNA -2 164 1 2 681 231 193 35 0 chr4 12692403 12692460 -142937660 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 681 213 311 163 59 chr4 12692633 12692872 -142937248 - MIRb SINE MIR 0 268 5 2 681 249 33 0 0 chr4 12693089 12693119 -142937001 + (T)n Simple_repeat Simple_repeat 1 30 0 2 681 260 329 13 0 chr4 12693447 12693523 -142936597 + MER104 DNA Tc2 5 81 -100 2 681 232 242 16 0 chr4 12694306 12694368 -142935752 - RMER15 LTR ERVL -97 478 416 2 681 321 356 17 17 chr4 12694480 12694597 -142935523 + MLT1F1 LTR MaLR 69 185 -384 2 681 411 353 89 20 chr4 12694665 12694911 -142935209 + MLT1F1 LTR MaLR 307 569 0 2 681 2484 218 61 12 chr4 12695317 12695985 -142934135 - RCHARR1 DNA MER1_type 0 974 274 2 681 248 105 0 0 chr4 12695997 12696035 -142934085 - L1_Rod LINE L1 -637 5210 5173 2 681 2326 94 3 0 chr4 12696040 12696358 -142933762 + ORR1A2 LTR MaLR 1 319 -8 2 681 558 314 55 26 chr4 12696360 12696782 -142933338 - L1_Rod LINE L1 -675 5172 4739 2 681 230 225 0 0 chr4 12696873 12696913 -142933207 + MLT1M LTR MaLR 147 186 -486 2 681 770 140 15 0 chr4 12697049 12697185 -142932935 + GA-rich Low_complexity Low_complexity 4 141 0 2 681 279 0 0 0 chr4 12697351 12697382 -142932738 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 681 185 0 40 0 chr4 12697997 12698022 -142932098 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 681 315 259 46 0 chr4 12698183 12698291 -142931829 - L1_Mur3 LINE L1 -1033 4847 4735 2 681 552 364 28 45 chr4 12698675 12698963 -142931157 - MLT1A0 LTR MaLR -80 285 3 2 681 582 298 82 19 chr4 12699848 12700105 -142930015 + B4A SINE B4 1 273 -19 2 681 248 49 49 0 chr4 12700127 12700168 -142929952 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 2 681 244 342 8 57 chr4 12702735 12702859 -142927261 + AmnSINE1 SINE SINE 257 374 -201 2 681 842 0 10 0 chr4 12706096 12706194 -142923926 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 2 681 26 0 0 0 chr4 12707342 12707368 -142922752 + AT_rich Low_complexity Low_complexity 1 26 0 2 681 941 282 64 33 chr4 12707392 12707751 -142922369 - ORR1D2 LTR MaLR 0 370 1 2 681 528 363 33 33 chr4 12707942 12708184 -142921936 + MLT1K LTR MaLR 177 418 -177 2 681 183 273 18 92 chr4 12708223 12708332 -142921788 - L3 LINE CR1 -1754 2735 2635 2 681 180 65 0 80 chr4 12710046 12710096 -142920024 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 2 681 186 150 0 0 chr4 12710315 12710355 -142919765 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 2 681 267 122 0 0 chr4 12712050 12712091 -142918029 + L4 LINE RTE 1987 2027 -2 2 681 225 0 0 0 chr4 12712847 12712872 -142917248 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 681 261 330 10 25 chr4 12713709 12713831 -142916289 - MIR SINE MIR -39 229 112 2 682 342 195 0 0 chr4 12714461 12714548 -142915572 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 682 934 76 2 1 chr4 12716074 12716208 -142913912 + B1_Mm SINE Alu 14 147 0 2 682 310 79 52 13 chr4 12716340 12716417 -142913703 + (CAAAA)n Simple_repeat Simple_repeat 2 81 0 2 682 360 64 0 0 chr4 12716607 12716654 -142913466 + (CTTTG)n Simple_repeat Simple_repeat 3 49 0 2 682 318 242 120 10 chr4 12716654 12716746 -142913374 - PB1D7 SINE Alu -12 108 5 2 682 207 69 0 0 chr4 12717010 12717039 -142913081 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 2 682 438 127 0 0 chr4 12717118 12717189 -142912931 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 682 225 182 37 49 chr4 12717215 12717296 -142912824 + Lx7 LINE L1 7617 7696 0 2 682 513 0 0 0 chr4 12717382 12717439 -142912681 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 2 682 289 245 79 0 chr4 12717783 12717817 -142912303 + ORR1B1-int LTR MaLR 605 649 -860 2 682 919 77 45 23 chr4 12717817 12717950 -142912170 + B1_Mus1 SINE Alu 1 136 -12 2 682 589 296 62 0 chr4 12718342 12718504 -142911616 - MLT1D LTR MaLR -324 181 10 2 682 240 35 0 0 chr4 12718885 12718914 -142911206 + (TAA)n Simple_repeat Simple_repeat 3 31 0 3 682 546 67 0 0 chr4 12719233 12719308 -142910812 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 682 26 64 0 0 chr4 12721430 12721477 -142908643 + AT_rich Low_complexity Low_complexity 1 47 0 3 682 1333 231 66 29 chr4 12722121 12722468 -142907652 - ORR1D1 LTR MaLR 0 374 15 3 682 195 139 0 0 chr4 12722592 12722628 -142907492 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 682 765 203 53 65 chr4 12722733 12722942 -142907178 - B3 SINE B2 0 216 6 3 682 21 0 0 0 chr4 12723067 12723088 -142907032 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 197 396 79 6 chr4 12724104 12724269 -142905851 - MER5A DNA MER1_type -6 183 7 3 682 264 302 101 0 chr4 12725508 12725637 -142904483 - MER103 DNA DNA 0 166 25 3 682 398 20 20 0 chr4 12726033 12726084 -142904036 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 682 470 331 29 0 chr4 12726250 12726389 -142903731 - RSINE1 SINE B4 -11 154 12 3 682 363 44 0 0 chr4 12727868 12727913 -142902207 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 682 406 254 81 15 chr4 12728593 12728729 -142901391 - RMER15 LTR ERVL -3 572 428 3 682 195 69 0 0 chr4 12729221 12729250 -142900870 + (T)n Simple_repeat Simple_repeat 1 29 0 3 682 627 337 54 29 chr4 12729250 12729528 -142900592 + MLT1A0 LTR MaLR 70 354 -11 3 682 23 0 0 0 chr4 12730042 12730065 -142900055 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 260 241 95 82 chr4 12730224 12730382 -142899738 - L1M2 LINE L1 -1008 5135 4976 3 682 545 319 16 42 chr4 12730723 12730913 -142899207 - RMER15 LTR ERVL -85 490 306 3 682 752 193 87 66 chr4 12732371 12732718 -142897402 - MYSERV16_I-int LTR ERVK -1584 742 496 3 682 500 297 189 38 chr4 12733453 12733849 -142896271 + MLT1D LTR MaLR 24 479 -26 3 682 1082 175 41 237 chr4 12733977 12734246 -142895874 + RMER17C LTR ERVK 1 210 -200 3 682 492 18 0 0 chr4 12734246 12734303 -142895817 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 682 1082 175 41 237 chr4 12734303 12734507 -142895613 + RMER17C LTR ERVK 211 378 -32 3 682 1076 121 6 0 chr4 12734507 12734680 -142895440 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 3 682 1082 175 41 237 chr4 12734680 12734715 -142895405 + RMER17C LTR ERVK 379 409 -1 3 682 276 100 0 0 chr4 12735084 12735124 -142894996 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 682 789 311 74 22 chr4 12735336 12735780 -142894340 + Lx8 LINE L1 7005 7471 -2 3 682 228 267 40 13 chr4 12736317 12736376 -142893744 + polypyrimidine Low_complexity Low_complexity 22 83 0 3 682 1126 68 0 14 chr4 12736376 12736387 -142893733 - B1_Mm SINE Alu -1 146 137 3 682 302 0 26 0 chr4 12736387 12736425 -142893695 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 682 1126 68 0 14 chr4 12736425 12736561 -142893559 - B1_Mm SINE Alu -11 136 1 3 682 228 267 40 13 chr4 12736561 12736577 -142893543 + polypyrimidine Low_complexity Low_complexity 6 21 0 3 682 305 297 45 0 chr4 12736977 12737088 -142893032 - L1MD3 LINE L1 0 7995 7880 3 682 255 259 90 14 chr4 12737550 12737695 -142892425 - L1MA6 LINE L1 0 6300 6145 3 682 1258 94 10 5 chr4 12738696 12738888 -142891232 - L1_Mus3 LINE L1 -7 6631 6439 3 682 344 59 0 19 chr4 12738906 12738958 -142891162 + (TTG)n Simple_repeat Simple_repeat 2 52 0 3 682 555 16 0 0 chr4 12739535 12739599 -142890521 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 682 683 250 106 0 chr4 12739622 12739810 -142890310 - Lx5 LINE L1 -5 7045 6838 3 682 738 101 110 0 chr4 12739852 12739961 -142890159 + 5S rRNA rRNA 1 121 0 3 682 1045 110 0 0 chr4 12739984 12740129 -142889991 + B1_Mus1 SINE Alu 2 146 -2 3 682 513 0 0 0 chr4 12740140 12740197 -142889923 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 682 26 0 0 0 chr4 12740826 12740852 -142889268 + AT_rich Low_complexity Low_complexity 1 26 0 3 682 426 309 43 86 chr4 12741060 12741269 -142888851 - B4A SINE B4 -85 207 8 3 682 577 300 0 14 chr4 12744441 12744583 -142885537 - B1F SINE Alu -1 148 9 3 682 462 66 0 0 chr4 12744607 12744668 -142885452 - Lx3B LINE L1 -1250 5723 5663 3 682 8123 100 14 13 chr4 12744667 12745924 -142884196 + Lx3A LINE L1 5716 6974 -7 3 682 459 141 0 0 chr4 12746266 12746344 -142883776 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 682 198 0 0 0 chr4 12746353 12746375 -142883745 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 682 693 92 0 0 chr4 12746740 12746838 -142883282 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 682 240 325 71 48 chr4 12747072 12747240 -142882880 - MER5B DNA MER1_type -3 175 4 3 682 2210 160 44 28 chr4 12749340 12749776 -142880344 - RLTR11B LTR ERVK -10 443 1 3 682 313 236 9 9 chr4 12752023 12752130 -142877990 + (TATG)n Simple_repeat Simple_repeat 2 108 0 3 682 480 260 86 8 chr4 12752625 12752753 -142877367 + RSINE1 SINE B4 3 140 -25 3 682 207 262 0 0 chr4 12753880 12753922 -142876198 + polypyrimidine Low_complexity Low_complexity 1 42 0 3 682 398 236 24 0 chr4 12753926 12754091 -142876029 + CT-rich Low_complexity Low_complexity 2 170 0 3 682 344 186 0 0 chr4 12754227 12754286 -142875834 + RMER6D LTR ERVK 3 61 -659 3 682 12101 121 12 14 chr4 12754295 12756300 -142873820 + L1_Mm LINE L1 3796 5797 -86 3 682 30269 80 22 1 chr4 12756302 12761367 -142868753 + L1Md_F2 LINE L1 415 5586 -297 3 682 7411 75 5 18 chr4 12761367 12762376 -142867744 + L1Md_F2 LINE L1 5587 6582 0 3 682 5842 102 9 3 chr4 12762377 12763226 -142866894 + L1_Mus3 LINE L1 5785 6638 0 3 682 587 147 9 0 chr4 12763908 12764024 -142866096 + GA-rich Low_complexity Low_complexity 2 118 0 3 682 327 85 0 0 chr4 12764225 12764272 -142865848 + (T)n Simple_repeat Simple_repeat 1 47 0 3 682 1097 51 29 0 chr4 12764649 12764787 -142865333 - B1_Mus2 SINE Alu -5 142 1 3 682 1302 64 5 79 chr4 12765066 12765269 -142864851 - B2_Mm2 SINE B2 -7 188 1 3 682 410 348 85 47 chr4 12766502 12766819 -142863301 + RLTR18 LTR ERVK 33 361 -255 3 682 216 0 0 0 chr4 12767005 12767029 -142863091 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 682 37127 24 0 2 chr4 12767290 12772593 -142857527 - L1Md_T LINE L1 0 6582 1290 3 682 37346 11 20 6 chr4 12772599 12778627 -142851493 - L1Md_A LINE L1 0 6582 441 3 682 639 322 95 12 chr4 12778807 12779143 -142850977 - MLT1A0 LTR MaLR 0 365 2 3 682 459 311 128 56 chr4 12780488 12780794 -142849326 - ORR1E LTR MaLR -23 336 9 3 682 25 31 0 0 chr4 12781190 12781222 -142848898 + AT_rich Low_complexity Low_complexity 1 32 0 3 682 529 300 25 6 chr4 12781559 12781720 -142848400 + RSINE1 SINE B4 2 165 0 3 682 339 260 251 82 chr4 12781822 12782072 -142848048 + B4A SINE B4 1 292 0 3 682 740 291 40 43 chr4 12782310 12782637 -142847483 - Lx8 LINE L1 -2 7471 7146 3 682 502 370 13 0 chr4 12783362 12783597 -142846523 - MER31A LTR ERV1 -122 363 126 3 682 1998 122 3 55 chr4 12784238 12784585 -142845535 + Lx2 LINE L1 6663 6991 -6 3 682 24 0 0 0 chr4 12784620 12784644 -142845476 + AT_rich Low_complexity Low_complexity 1 24 0 3 682 207 0 0 0 chr4 12784654 12784677 -142845443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 682 305 24 24 0 chr4 12784679 12784721 -142845399 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 682 366 61 0 0 chr4 12786117 12786166 -142843954 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 3 682 226 243 71 18 chr4 12786391 12786504 -142843616 - L1M3c LINE L1 -5056 1085 967 3 682 1206 301 34 44 chr4 12786580 12786963 -142843157 - MTE2a LTR MaLR 0 379 1 3 682 654 338 124 27 chr4 12787205 12787688 -142842432 - L1M3c LINE L1 -5605 536 7 3 682 392 319 106 80 chr4 12787821 12788247 -142841873 + Charlie1a DNA MER1_type 1019 1455 0 3 682 820 256 45 0 chr4 12788310 12788509 -142841611 - B3 SINE B2 0 216 9 3 682 655 335 121 38 chr4 12788922 12789443 -142840677 - Helitron1Nb_Mam RC Helitron -36 1080 517 3 682 1120 75 0 7 chr4 12789862 12790009 -142840111 + B1_Mm SINE Alu 1 146 -1 3 682 261 344 87 71 chr4 12793128 12793394 -142836726 + LTR16A LTR ERVL 7 276 -175 3 682 259 305 20 69 chr4 12793760 12793862 -142836258 - LTR16E1 LTR ERVL -433 105 9 3 682 294 257 29 0 chr4 12794096 12794166 -142835954 + MIRb SINE MIR 109 180 -88 3 682 315 284 125 0 chr4 12794569 12794657 -142835463 + PB1 SINE Alu 27 125 -2 3 682 884 313 49 19 chr4 12795981 12796453 -142833667 - L1ME1 LINE L1 -148 6031 5546 3 682 322 269 19 19 chr4 12797584 12797690 -142832430 - MER53 DNA hAT -69 124 19 3 682 21 0 0 0 chr4 12798100 12798121 -142831999 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 408 234 42 21 chr4 12798253 12798397 -142831723 - L1MA5 LINE L1 -8 6292 6146 3 682 3189 48 5 2 chr4 12798575 12798970 -142831150 + MTA_Mm LTR MaLR 1 396 0 3 682 355 312 101 63 chr4 12799392 12799758 -142830362 - L1MC5 LINE L1 -550 7411 7032 3 682 802 262 6 6 chr4 12800324 12800493 -142829627 + B3 SINE B2 48 216 0 3 682 197 329 11 56 chr4 12800689 12800779 -142829341 - MIR SINE MIR -14 248 163 3 682 558 0 0 0 chr4 12801111 12801173 -142828947 + (GGA)n Simple_repeat Simple_repeat 3 64 0 3 682 447 19 0 0 chr4 12802223 12802275 -142827845 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 682 630 345 127 18 chr4 12804803 12805198 -142824922 + LTR16B LTR ERVL 1 438 -25 3 682 1489 114 0 0 chr4 12805432 12805643 -142824477 - L1_Mur2 LINE L1 -638 5239 5029 3 682 1368 122 0 0 chr4 12805633 12805846 -142824274 + L1_Mur2 LINE L1 4241 4453 -1424 3 682 1355 141 21 4 chr4 12805840 12806075 -142824045 + L1_Mur2 LINE L1 4809 5047 -830 3 682 545 270 55 86 chr4 12806451 12806706 -142823414 + LTR85a LTR Gypsy? 23 269 -433 3 682 351 0 0 0 chr4 12807143 12807182 -142822938 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 682 186 364 45 9 chr4 12807968 12808079 -142822041 - L2c LINE L2 -19 3368 3254 4 682 25 0 0 0 chr4 12808162 12808187 -142821933 + AT_rich Low_complexity Low_complexity 1 25 0 4 682 273 197 0 0 chr4 12808193 12808264 -142821856 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 682 1544 167 20 10 chr4 12809775 12810072 -142820048 + Lx LINE L1 6348 6647 -7 4 682 271 324 0 0 chr4 12810155 12810229 -142819891 - ID4 SINE ID -6 77 4 4 682 232 372 52 13 chr4 12810264 12810419 -142819701 - MIR SINE MIR -101 161 1 4 682 29 0 0 0 chr4 12810886 12810915 -142819205 + AT_rich Low_complexity Low_complexity 1 29 0 4 682 391 339 39 48 chr4 12811035 12811264 -142818856 - B4 SINE B4 -64 228 2 4 682 507 257 50 60 chr4 12811276 12811458 -142818662 - L1MA9 LINE L1 -216 6096 5917 4 682 200 173 39 0 chr4 12811458 12811510 -142818610 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 682 269 69 54 65 chr4 12811511 12811604 -142818516 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 4 682 282 241 72 0 chr4 12811604 12811687 -142818433 - L1MA9 LINE L1 -402 5910 5822 4 682 3851 59 0 2 chr4 12811724 12812203 -142817917 + L1_Mus1 LINE L1 6090 6567 0 4 682 305 169 70 0 chr4 12812219 12812290 -142817830 - L1MA9 LINE L1 -351 5838 5763 4 682 216 263 18 0 chr4 12812310 12812367 -142817753 - L2a LINE L2 -12 3414 3357 4 682 225 329 0 14 chr4 12812380 12812451 -142817669 + LTR79 LTR ERVL 3 72 -455 4 682 255 350 25 0 chr4 12816463 12816543 -142813577 - ID4_ SINE ID 0 83 2 4 682 468 35 0 0 chr4 12816825 12816883 -142813237 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 682 338 383 14 14 chr4 12816894 12817037 -142813083 - MER5A DNA MER1_type -2 187 45 4 682 25 0 0 0 chr4 12817108 12817133 -142812987 + GC_rich Low_complexity Low_complexity 1 25 0 4 682 239 372 105 44 chr4 12817962 12818190 -142811930 + MIRb SINE MIR 27 268 0 4 682 1164 114 0 0 chr4 12818576 12818752 -142811368 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 4 682 22 35 0 0 chr4 12820081 12820110 -142810010 + AT_rich Low_complexity Low_complexity 1 29 0 4 682 9831 72 97 4 chr4 12820763 12821471 -142808649 + Lx3_Mus LINE L1 5136 5906 -1103 4 682 195 42 0 0 chr4 12821471 12821495 -142808625 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 4 682 9831 82 21 23 chr4 12821495 12821648 -142808472 + Lx3_Mus LINE L1 5907 6034 -975 4 682 180 0 0 0 chr4 12821648 12821668 -142808452 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 4 682 9831 82 21 23 chr4 12821668 12822622 -142807498 + Lx3_Mus LINE L1 6035 7008 -1 4 682 201 94 0 0 chr4 12822785 12822817 -142807303 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 682 375 204 86 34 chr4 12823228 12823345 -142806775 - MTD LTR MaLR 0 419 297 4 682 7103 99 14 3 chr4 12823349 12824343 -142805777 + Lx LINE L1 5592 6596 -58 4 682 888 237 11 5 chr4 12824349 12824536 -142805584 - MTD LTR MaLR -229 190 3 4 682 226 169 16 33 chr4 12824582 12824643 -142805477 + (CATA)n Simple_repeat Simple_repeat 4 63 0 4 682 26 0 0 0 chr4 12824903 12824929 -142805191 + AT_rich Low_complexity Low_complexity 1 26 0 4 682 503 311 135 31 chr4 12825166 12825491 -142804629 + MTEa LTR MaLR 1 359 0 4 682 256 272 164 117 chr4 12825493 12825664 -142804456 + MTEa-int LTR MaLR 1 179 -1401 4 682 656 78 0 32 chr4 12825610 12825703 -142804417 + B1_Mm SINE Alu 58 147 0 4 682 595 312 38 40 chr4 12825810 12826249 -142803871 - Lx9 LINE L1 -154 7490 7052 4 682 369 58 0 0 chr4 12826747 12826799 -142803321 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 682 318 310 190 0 chr4 12826924 12827066 -142803054 - L1_Mm LINE L1 -316 5567 5399 4 682 1243 293 132 40 chr4 12827360 12827964 -142802156 + Lx8 LINE L1 6120 6779 -694 4 682 363 276 32 22 chr4 12827982 12828134 -142801986 - MTC-int LTR MaLR -944 154 4 4 682 233 275 88 0 chr4 12828134 12828206 -142801914 - MTC LTR MaLR -52 369 291 4 682 373 182 7 48 chr4 12828184 12828281 -142801839 + MTC LTR MaLR 274 414 -7 4 682 1420 293 96 11 chr4 12828281 12828674 -142801446 + Lx8 LINE L1 6797 7222 -251 4 682 195 42 0 0 chr4 12828674 12828698 -142801422 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4 682 1420 293 96 11 chr4 12828698 12828825 -142801295 + Lx8 LINE L1 7223 7360 -113 4 682 336 257 150 0 chr4 12829174 12829314 -142800806 + L1MEc LINE L1 1247 1407 -4993 4 682 332 325 53 30 chr4 12829341 12829728 -142800392 + L1MEc LINE L1 1506 1917 -4483 4 682 1077 204 18 9 chr4 12829730 12829953 -142800167 + URR1B DNA MER1_type 1 225 0 4 682 429 292 185 26 chr4 12830002 12830430 -142799690 + L1MEc LINE L1 1969 2464 -3936 4 682 597 281 20 7 chr4 12830464 12830611 -142799509 + B1F SINE Alu 1 149 0 4 682 549 237 71 19 chr4 12830809 12830964 -142799156 + ORR1C1 LTR MaLR 1 163 -211 4 682 354 135 46 38 chr4 12831003 12831134 -142798986 + (TCTCTG)n Simple_repeat Simple_repeat 3 134 0 4 682 1213 192 5 14 chr4 12831134 12831151 -142798969 + ORR1C1 LTR MaLR 164 178 -200 4 682 438 20 0 0 chr4 12831151 12831202 -142798918 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 682 1213 192 5 14 chr4 12831202 12831400 -142798720 + ORR1C1 LTR MaLR 179 377 -1 4 682 688 200 12 0 chr4 12831530 12831695 -142798425 + (TA)n Simple_repeat Simple_repeat 1 167 0 4 682 39 0 0 0 chr4 12832846 12832885 -142797235 + AT_rich Low_complexity Low_complexity 1 39 0 4 682 1390 267 29 21 chr4 12832912 12833295 -142796825 - Lx6 LINE L1 -94 7366 6981 4 682 456 273 101 60 chr4 12836109 12836425 -142793695 - RLTR15 LTR ERVK -30 329 1 4 682 222 191 0 0 chr4 12836833 12836880 -142793240 + CT-rich Low_complexity Low_complexity 2 48 0 4 682 2380 210 58 2 chr4 12836906 12837403 -142792717 - MT2A LTR ERVL -8 525 1 4 682 1120 285 102 0 chr4 12837659 12837992 -142792128 - MTE2b LTR MaLR -12 367 1 4 682 24 0 0 0 chr4 12838854 12838878 -142791242 + AT_rich Low_complexity Low_complexity 1 24 0 4 682 31 44 0 0 chr4 12839388 12839433 -142790687 + AT_rich Low_complexity Low_complexity 1 45 0 4 682 435 328 53 16 chr4 12839438 12839627 -142790493 - MLT1D LTR MaLR -65 440 245 4 682 295 279 122 30 chr4 12842194 12842464 -142787656 - L1MB7 LINE L1 -18 6166 5872 4 682 550 273 76 32 chr4 12842466 12843017 -142787103 - L1MB7 LINE L1 -431 5747 5167 4 682 310 335 24 65 chr4 12843030 12843199 -142786921 - L1MB7 LINE L1 -1040 5106 4945 4 682 620 307 55 0 chr4 12843279 12843442 -142786678 + B3A SINE B2 1 172 -26 4 682 862 192 136 5 chr4 12843930 12844129 -142785991 + URR1A DNA MER1_type 2 226 0 4 682 407 346 39 32 chr4 12844698 12844979 -142785141 - B4A SINE B4 -9 283 1 4 683 635 261 121 70 chr4 12846165 12846495 -142783625 + ORR1E LTR MaLR 5 351 -8 4 683 440 133 58 0 chr4 12846839 12846959 -142783161 + (TG)n Simple_repeat Simple_repeat 1 127 0 4 683 418 344 42 65 chr4 12846960 12846973 -142783147 - RSINE1 SINE B4 0 165 153 4 683 802 90 5 53 chr4 12846973 12847161 -142782959 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 683 418 344 42 65 chr4 12847161 12847315 -142782805 - RSINE1 SINE B4 -13 152 2 4 683 342 0 0 0 chr4 12847457 12847495 -142782625 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 683 3378 91 46 6 chr4 12847839 12848338 -142781782 - L1_Mus4 LINE L1 0 6636 6118 4 683 540 100 0 0 chr4 12848338 12848418 -142781702 + Lx LINE L1 6034 6113 -541 4 683 2331 184 101 14 chr4 12848495 12849062 -142781058 + Lx6 LINE L1 5657 6272 -1188 4 683 443 336 33 0 chr4 12849110 12849354 -142780766 - L1MC1 LINE L1 -19 6314 6063 4 683 302 265 138 44 chr4 12849559 12849899 -142780221 - L1_Rod LINE L1 -619 5228 4857 4 683 485 52 52 0 chr4 12849904 12849981 -142780139 - L1Md_F3 LINE L1 0 6584 6504 4 683 203 0 37 0 chr4 12850003 12850030 -142780090 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 683 384 119 0 0 chr4 12850031 12850090 -142780030 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 683 711 323 62 30 chr4 12850112 12850616 -142779504 + Lx7 LINE L1 5340 5902 -1794 4 683 526 221 216 4 chr4 12850813 12851049 -142779071 - L1MC1 LINE L1 -531 5802 5517 4 683 734 264 125 11 chr4 12851066 12851414 -142778706 - Lx9 LINE L1 -267 7377 6848 4 683 327 317 55 0 chr4 12851492 12851656 -142778464 - L1MCa LINE L1 -5988 520 348 4 683 1389 204 227 15 chr4 12851973 12852435 -142777685 - Lx7 LINE L1 -432 7264 6705 4 683 428 245 0 0 chr4 12852441 12852547 -142777573 + Lx7 LINE L1 7257 7362 -334 4 683 1298 199 39 33 chr4 12852587 12852919 -142777201 + Lx7 LINE L1 7359 7692 -4 4 683 21 57 0 0 chr4 12853116 12853151 -142776969 + AT_rich Low_complexity Low_complexity 1 35 0 4 683 2812 221 92 18 chr4 12854819 12855597 -142774523 - Lx6 LINE L1 -873 6587 5752 4 683 258 234 16 0 chr4 12856136 12856200 -142773920 - MLT1E3 LTR MaLR -437 187 123 4 683 26 0 0 0 chr4 12856361 12856387 -142773733 + AT_rich Low_complexity Low_complexity 1 26 0 4 683 565 306 80 40 chr4 12856548 12857032 -142773088 - Lx9 LINE L1 -130 7514 6879 4 683 1485 41 0 10 chr4 12857052 12857248 -142772872 - L1Md_F2 LINE L1 0 6582 6389 4 683 2506 42 0 0 chr4 12857248 12857561 -142772559 + L1Md_F2 LINE L1 5998 6310 -272 4 683 1151 307 109 26 chr4 12857557 12857592 -142772528 - Lx9 LINE L1 -612 7032 6998 4 683 379 0 0 38 chr4 12857592 12857645 -142772475 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 683 1151 307 109 26 chr4 12857645 12857777 -142772343 - Lx9 LINE L1 -647 6997 6875 4 683 3123 200 59 27 chr4 12857777 12858475 -142771645 - RMER6D LTR ERVK 0 720 1 4 683 1151 307 109 26 chr4 12858475 12858847 -142771273 - Lx9 LINE L1 -770 6874 6449 4 683 238 299 0 0 chr4 12859130 12859207 -142770913 + L1M5 LINE L1 3612 3688 -2458 4 683 297 0 0 0 chr4 12859449 12859482 -142770638 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 683 438 212 104 45 chr4 12861091 12861293 -142768827 - Lx7 LINE L1 0 7696 7483 4 683 854 198 0 5 chr4 12861323 12861516 -142768604 + L1Md_T LINE L1 143 334 -6282 4 683 368 91 0 0 chr4 12861516 12861571 -142768549 + L1Md_F LINE L1 174 228 -6291 4 683 4670 155 19 25 chr4 12861572 12862521 -142767599 + L1Md_T LINE L1 263 1205 -5411 4 683 34255 37 1 0 chr4 12862527 12866940 -142763180 + L1Md_T LINE L1 1170 5586 -297 4 683 8107 53 0 0 chr4 12866940 12867936 -142762184 + L1Md_T LINE L1 5587 6582 0 4 683 3304 243 56 69 chr4 12867956 12868982 -142761138 - Lx7 LINE L1 -202 7494 6483 4 683 385 268 92 26 chr4 12869086 12869239 -142760881 + MTEa LTR MaLR 212 374 -5 4 683 434 295 180 29 chr4 12869373 12869757 -142760363 + L1MC4 LINE L1 6898 7339 -703 4 683 1165 68 0 7 chr4 12870438 12870586 -142759534 + B1_Mus1 SINE Alu 2 148 0 4 683 565 294 52 26 chr4 12870617 12870809 -142759311 - B3A SINE B2 -1 197 1 4 683 1389 142 58 39 chr4 12870915 12871295 -142758825 - Lx LINE L1 0 6566 6218 4 683 671 314 77 21 chr4 12871320 12871606 -142758514 - MTE2a LTR MaLR -76 303 2 4 683 38 39 0 0 chr4 12871713 12871765 -142758355 + AT_rich Low_complexity Low_complexity 1 52 0 4 683 1708 191 51 3 chr4 12871959 12872311 -142757809 - ORR1D1 LTR MaLR -4 370 2 4 683 24 32 0 0 chr4 12872492 12872523 -142757597 + AT_rich Low_complexity Low_complexity 1 31 0 4 683 630 289 50 30 chr4 12872557 12872757 -142757363 - B3 SINE B2 -12 204 1 5 683 607 317 44 22 chr4 12872966 12873192 -142756928 - B4A SINE B4 -20 272 42 5 683 317 268 102 31 chr4 12873288 12873415 -142756705 - B4A SINE B4 -155 137 2 5 683 504 128 72 18 chr4 12874475 12874586 -142755534 + L1Md_F3 LINE L1 6468 6584 0 5 683 278 225 74 63 chr4 12875370 12875387 -142754733 - B1F2 SINE Alu -47 102 7 5 683 311 276 0 26 chr4 12875387 12875465 -142754655 - ID_B1 SINE B4 -61 163 88 5 683 1067 80 0 0 chr4 12876198 12876336 -142753784 + B1_Mus1 SINE Alu 2 139 -9 5 683 270 0 0 0 chr4 12876336 12876366 -142753754 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 683 6156 114 38 7 chr4 12877216 12878185 -142751935 - Lx3B LINE L1 -5 6968 5970 5 683 315 0 0 0 chr4 12878291 12878326 -142751794 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 683 1127 90 0 0 chr4 12878327 12878472 -142751648 - B1_Mus1 SINE Alu -2 146 2 5 683 1943 169 8 80 chr4 12878730 12879103 -142751017 - ORR1B1 LTR MaLR -2 392 47 5 683 252 0 0 0 chr4 12879105 12879133 -142750987 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 683 327 104 0 0 chr4 12879133 12879180 -142750940 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 683 622 279 37 6 chr4 12879267 12879429 -142750691 - B3A SINE B2 -30 168 2 5 683 22 80 0 0 chr4 12879546 12879596 -142750524 + AT_rich Low_complexity Low_complexity 1 50 0 5 683 38 39 0 0 chr4 12880456 12880508 -142749612 + AT_rich Low_complexity Low_complexity 1 52 0 5 683 36270 30 0 0 chr4 12880645 12887110 -142743010 - L1Md_T LINE L1 0 6585 53 5 683 229 321 120 57 chr4 12888306 12888481 -142741639 - MLT1J-int LTR MaLR -704 683 498 5 683 349 245 21 17 chr4 12888488 12888725 -142741395 + CT-rich Low_complexity Low_complexity 1 237 0 5 683 26 0 0 0 chr4 12888867 12888893 -142741227 + AT_rich Low_complexity Low_complexity 1 26 0 5 683 473 288 12 6 chr4 12888928 12889089 -142741031 + Lx9 LINE L1 7323 7484 -160 5 683 275 222 90 41 chr4 12891515 12891637 -142738483 - Lx9 LINE L1 -8 7636 7509 5 683 1008 294 48 6 chr4 12891637 12891972 -142738148 - MTEb-int LTR MaLR -1231 349 1 5 683 1234 306 36 3 chr4 12891974 12892331 -142737789 - MTEb LTR MaLR -4 375 7 5 683 674 86 0 79 chr4 12892454 12892568 -142737552 - B1_Mus2 SINE Alu 0 147 43 5 683 343 167 67 56 chr4 12892490 12892579 -142737541 - MT2B LTR ERVL -323 278 189 5 683 802 262 181 52 chr4 12892579 12893192 -142736928 - L1M4c LINE L1 -2453 3923 3232 5 683 462 281 161 7 chr4 12893650 12893930 -142736190 - L1M4c LINE L1 -3252 3124 2802 5 683 500 143 6 47 chr4 12894013 12894182 -142735938 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 5 683 255 186 20 10 chr4 12894989 12895087 -142735033 + CT-rich Low_complexity Low_complexity 2 100 0 5 683 418 254 67 18 chr4 12895116 12895307 -142734813 - L1M4c LINE L1 -3869 2507 2303 5 683 189 0 0 0 chr4 12895929 12895950 -142734170 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 683 498 57 0 0 chr4 12896120 12896190 -142733930 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 5 683 926 236 140 8 chr4 12896403 12896754 -142733366 - Lx9 LINE L1 0 7644 7248 5 683 30 83 0 0 chr4 12898649 12898721 -142731399 + AT_rich Low_complexity Low_complexity 1 72 0 5 683 802 311 117 17 chr4 12898831 12899129 -142730991 - Lx7 LINE L1 -791 6905 6578 5 683 249 163 0 23 chr4 12899348 12899392 -142730728 - tRNA-Ala-GCY_ tRNA tRNA -6 69 27 5 683 220 303 38 66 chr4 12899632 12899738 -142730382 + PB1D7 SINE Alu 18 120 0 5 683 23 0 0 0 chr4 12902633 12902656 -142727464 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 24 32 0 0 chr4 12902923 12902954 -142727166 + AT_rich Low_complexity Low_complexity 1 31 0 5 683 22 80 0 0 chr4 12903190 12903240 -142726880 + AT_rich Low_complexity Low_complexity 1 50 0 5 683 23 0 0 0 chr4 12904803 12904826 -142725294 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 521 192 33 0 chr4 12904827 12904947 -142725173 - Lx7 LINE L1 0 7696 7573 5 683 369 0 0 0 chr4 12904953 12904994 -142725126 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 683 22 0 0 0 chr4 12906099 12906121 -142723999 + AT_rich Low_complexity Low_complexity 1 22 0 5 683 21 57 0 0 chr4 12906551 12906586 -142723534 + AT_rich Low_complexity Low_complexity 1 35 0 5 683 518 98 12 0 chr4 12908770 12908852 -142721268 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 683 25 0 0 0 chr4 12910660 12910685 -142719435 + AT_rich Low_complexity Low_complexity 1 25 0 5 683 423 56 0 0 chr4 12912176 12912230 -142717890 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 5 683 1242 52 17 6 chr4 12912236 12912411 -142717709 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 5 683 250 227 18 9 chr4 12912857 12912968 -142717152 + (TATG)n Simple_repeat Simple_repeat 1 112 0 5 683 460 248 176 0 chr4 12912979 12913104 -142717016 - ID_B1 SINE B4 -5 219 73 5 683 22 0 0 0 chr4 12913637 12913659 -142716461 + AT_rich Low_complexity Low_complexity 1 22 0 5 683 2214 205 109 56 chr4 12914700 12915258 -142714862 - RMER19C LTR ERVK -11 600 13 5 683 27376 127 44 24 chr4 12915294 12921364 -142708756 - L1_Mus2 LINE L1 -1 6565 332 5 683 543 255 204 82 chr4 12922506 12922835 -142707285 + MTEb LTR MaLR 11 379 0 5 683 21 36 0 0 chr4 12922930 12922958 -142707162 + AT_rich Low_complexity Low_complexity 1 28 0 5 683 236 148 16 0 chr4 12924106 12924167 -142705953 + T-rich Low_complexity Low_complexity 4 65 0 5 683 1114 82 0 27 chr4 12924174 12924324 -142705796 - B1_Mus1 SINE Alu 0 148 3 5 683 38344 51 4 4 chr4 12924541 12930810 -142699310 - L1Md_A LINE L1 0 6582 319 5 683 707 259 117 0 chr4 12930830 12931035 -142699085 - Lx6 LINE L1 -26 7434 7206 5 683 634 287 157 5 chr4 12931033 12931250 -142698870 - Lx5 LINE L1 -346 6704 6455 5 683 2535 236 35 28 chr4 12931251 12932151 -142697969 - Lx6 LINE L1 -676 6382 5407 5 683 296 141 37 52 chr4 12932211 12932346 -142697774 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 5 683 466 203 37 89 chr4 12932607 12932742 -142697378 + MTD LTR MaLR 289 416 -3 5 683 1437 72 0 20 chr4 12932923 12933121 -142696999 - B2_Mm2 SINE B2 0 195 2 5 683 1882 30 0 32 chr4 12933211 12933457 -142696663 - L1Md_F2 LINE L1 0 6582 6345 5 683 660 301 67 10 chr4 12933891 12934086 -142696034 - ID_B1 SINE B4 -4 220 15 5 683 434 308 47 4 chr4 12934327 12934453 -142695667 - PB1D10 SINE Alu -20 129 1 5 683 21 36 0 0 chr4 12934581 12934609 -142695511 + AT_rich Low_complexity Low_complexity 1 28 0 5 683 23 0 0 0 chr4 12934791 12934814 -142695306 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 25 0 0 0 chr4 12935011 12935036 -142695084 + AT_rich Low_complexity Low_complexity 1 25 0 5 683 22 88 0 0 chr4 12935122 12935179 -142694941 + AT_rich Low_complexity Low_complexity 1 57 0 5 683 2440 232 40 50 chr4 12936963 12937125 -142692995 - RLTR18 LTR ERVK -4 612 457 5 683 246 42 41 20 chr4 12937125 12937174 -142692946 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 5 683 2440 232 40 50 chr4 12937174 12937629 -142692491 - RLTR18 LTR ERVK -160 456 1 5 683 321 204 0 0 chr4 12937641 12937695 -142692425 + L1Md_T LINE L1 281 334 -6282 5 683 38439 40 1 3 chr4 12937687 12943464 -142686656 + L1Md_T LINE L1 670 6390 -192 5 683 13508 22 2 0 chr4 12943460 12945115 -142685005 + L1Md_T LINE L1 3930 5587 -296 5 683 8191 45 0 0 chr4 12945116 12946110 -142684010 + L1Md_T LINE L1 5589 6582 0 5 683 23 0 0 0 chr4 12946459 12946482 -142683638 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 1579 50 0 0 chr4 12946482 12946684 -142683436 + L1Md_T LINE L1 6381 6582 0 5 683 219 291 169 7 chr4 12948410 12948552 -142681568 - MIRb SINE MIR -48 220 56 5 683 619 326 35 21 chr4 12948812 12949100 -142681020 - B4A SINE B4 0 292 1 5 683 186 281 72 12 chr4 12949589 12949672 -142680448 - L3 LINE CR1 -1573 2916 2829 5 683 23 54 0 0 chr4 12950118 12950155 -142679965 + AT_rich Low_complexity Low_complexity 1 37 0 5 683 415 264 128 28 chr4 12950344 12950523 -142679597 + B3A SINE B2 2 198 0 5 683 204 67 0 0 chr4 12950618 12950648 -142679472 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 683 1002 62 0 0 chr4 12951640 12951770 -142678350 + (GA)n Simple_repeat Simple_repeat 1 130 0 5 683 1205 215 95 10 chr4 12951827 12952132 -142677988 - Lx2B LINE L1 -5 6995 6665 5 683 229 231 102 47 chr4 12952131 12952258 -142677862 + Lx7 LINE L1 7563 7696 0 5 683 358 310 50 0 chr4 12952531 12952631 -142677489 + MTEa LTR MaLR 4 108 -271 5 683 332 324 139 0 chr4 12952810 12952983 -142677137 + MT2A LTR ERVL 337 533 0 5 683 303 299 7 40 chr4 12953124 12953274 -142676846 + ERVL-int LTR ERVL 189 333 -5428 5 683 1070 316 73 29 chr4 12953482 12954102 -142676018 + ERVL-int LTR ERVL 714 1360 -4397 5 683 443 263 68 84 chr4 12954126 12954317 -142675803 + MTEa LTR MaLR 190 377 -2 5 683 211 315 56 86 chr4 12955842 12956040 -142674080 - MIRc SINE MIR -63 205 14 5 683 430 337 59 25 chr4 12956623 12956827 -142673293 - MIRb SINE MIR -30 238 28 5 683 238 67 44 0 chr4 12957085 12957130 -142672990 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 5 683 205 297 31 15 chr4 12957130 12957195 -142672925 + CT-rich Low_complexity Low_complexity 4 69 0 5 683 301 242 115 48 chr4 12957832 12957936 -142672184 - Lx9 LINE L1 -1225 6419 6309 5 683 449 267 8 33 chr4 12958356 12958476 -142671644 + PB1D10 SINE Alu 1 117 0 5 683 269 0 75 38 chr4 12959006 12959059 -142671061 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 5 683 320 385 0 0 chr4 12960780 12960902 -142669218 + CT-rich Low_complexity Low_complexity 3 124 0 5 683 27520 111 34 39 chr4 12961169 12965251 -142664869 + L1_Mus1 LINE L1 559 4603 -1280 5 683 207 0 0 0 chr4 12965251 12965274 -142664846 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 683 27520 86 21 21 chr4 12965274 12967226 -142662894 + L1_Mus1 LINE L1 4604 6567 0 5 683 191 60 80 0 chr4 12967419 12967469 -142662651 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 683 1535 196 134 11 chr4 12967753 12968202 -142661918 - Lx9 LINE L1 -9 7635 7132 5 683 308 336 29 0 chr4 12968322 12968426 -142661694 + PB1D10 SINE Alu 1 107 -10 5 683 543 273 63 35 chr4 12968605 12968920 -142661200 + Lx9 LINE L1 7321 7644 0 6 683 410 284 69 64 chr4 12969026 12969214 -142660906 - MER53 DNA hAT -1 192 4 6 683 470 31 16 0 chr4 12969846 12969910 -142660210 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 683 316 325 35 0 chr4 12969910 12970024 -142660096 - MER3 DNA MER1_type -67 142 25 6 85 33168 52 2 8 chr4 12971282 12976464 -142653656 + L1Md_F2 LINE L1 440 5585 -298 6 684 7978 48 4 2 chr4 12976465 12977459 -142652661 + L1Md_F2 LINE L1 5587 6582 0 6 684 30046 94 21 5 chr4 12977486 12982753 -142647367 + L1Md_F LINE L1 227 5586 -297 6 684 7449 79 10 0 chr4 12982753 12983739 -142646381 + L1Md_F2 LINE L1 5587 6582 0 6 684 30046 78 8 2 chr4 12983739 12983753 -142646367 + L1Md_F LINE L1 5587 5600 -283 6 684 700 294 80 12 chr4 12983821 12984299 -142645821 - L1MB1 LINE L1 -136 6035 5504 6 684 392 295 75 97 chr4 12984301 12984632 -142645488 - MTEb LTR MaLR 0 379 27 6 684 270 256 39 55 chr4 12984666 12984794 -142645326 - L1M3 LINE L1 -806 5494 5369 6 684 232 274 58 10 chr4 12984869 12984972 -142645148 - L1M3 LINE L1 -865 5275 5168 6 684 24 0 0 0 chr4 12985001 12985025 -142645095 + AT_rich Low_complexity Low_complexity 1 24 0 6 684 231 385 42 0 chr4 12985029 12985125 -142644995 - B3 SINE B2 -14 202 103 6 684 354 293 116 5 chr4 12985211 12985410 -142644710 - L1M3 LINE L1 -1381 4759 4539 6 684 505 250 64 93 chr4 12985442 12985755 -142644365 + L1MA10 LINE L1 6024 6327 -7 6 684 657 246 75 131 chr4 12986205 12986246 -142643874 - MT2A LTR ERVL 0 601 563 6 684 261 0 0 0 chr4 12986246 12986275 -142643845 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 684 813 247 63 116 chr4 12986275 12986666 -142643454 - MT2A LTR ERVL -39 562 30 6 684 194 33 67 0 chr4 12987156 12987186 -142642934 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 6 684 824 261 78 22 chr4 12987642 12987912 -142642208 - B4 SINE B4 -3 289 5 6 684 22 0 0 0 chr4 12988618 12988640 -142641480 + AT_rich Low_complexity Low_complexity 1 22 0 6 684 2190 166 22 0 chr4 12989004 12989366 -142640754 + ORR1C1 LTR MaLR 1 370 -8 6 684 304 339 83 60 chr4 12990165 12990516 -142639604 + Charlie7 DNA MER1_type 33 391 -2221 6 684 5798 77 31 14 chr4 12990540 12991458 -142638662 - Lx3_Mus LINE L1 -581 6428 5508 6 684 1167 62 7 0 chr4 12991458 12991604 -142638516 + B1_Mus2 SINE Alu 1 147 0 6 684 2656 157 63 57 chr4 12991604 12991894 -142638226 - Lx3_Mus LINE L1 -379 5507 5219 6 684 3970 69 40 2 chr4 12991894 12992444 -142637676 + Lx3_Mus LINE L1 6434 7004 -5 6 684 635 200 0 24 chr4 12992479 12992602 -142637518 + PB1D9 SINE Alu 1 120 0 6 684 226 266 184 0 chr4 12992612 12992721 -142637399 + Charlie7 DNA MER1_type 426 554 -2058 6 684 589 199 157 23 chr4 12993846 12993923 -142636197 + Lx9 LINE L1 7399 7476 -168 6 684 264 30 0 0 chr4 12993923 12993956 -142636164 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 684 589 199 157 23 chr4 12993956 12994094 -142636026 + Lx9 LINE L1 7477 7642 -2 6 684 344 240 77 98 chr4 12994102 12994245 -142635875 - Lx9 LINE L1 -646 6998 6859 6 684 392 37 19 0 chr4 12995211 12995265 -142634855 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6 684 183 80 0 0 chr4 12995290 12995315 -142634805 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 684 441 0 0 0 chr4 12997009 12997058 -142633062 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 684 3118 14 0 0 chr4 12997073 12997419 -142632701 + ORR1A0 LTR MaLR 1 346 0 6 684 3586 204 110 4 chr4 12997642 12998458 -142631662 + Lx5 LINE L1 6145 7047 -3 6 684 1153 180 94 0 chr4 12998475 12998719 -142631401 + Lx7 LINE L1 6762 7028 -668 6 684 5430 82 22 4 chr4 12998754 13000000 -142630120 + L1VL4 LINE L1 210 1477 -2082 6 684 11665 82 16 4 chr4 13000001 13001685 -142628435 + MusHAL1 LINE L1 632 2336 -376 1 684 395 52 17 0 chr4 13001685 13001743 -142628377 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 684 379 308 153 54 chr4 13002153 13002596 -142627524 + L1MEc LINE L1 1720 2206 -4194 3 684 277 328 15 0 chr4 13002639 13002706 -142627414 - ID SINE ID -143 81 14 4 684 324 262 0 0 chr4 13002649 13002710 -142627410 - BC1_Mm scRNA scRNA -82 70 10 5 684 2722 127 33 18 chr4 13003026 13003484 -142626636 + RMER4A LTR ERVK 1 465 -1 6 684 207 0 0 0 chr4 13004333 13004356 -142625764 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 684 384 82 0 0 chr4 13004356 13004417 -142625703 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 684 324 309 129 80 chr4 13006496 13006591 -142623529 + L2a LINE L2 2260 2344 -1075 9 684 296 344 30 8 chr4 13006591 13006723 -142623397 + B1F SINE Alu 5 139 -10 1 684 324 309 129 80 chr4 13006723 13006929 -142623191 + L2a LINE L2 2345 2576 -843 9 684 187 292 0 0 chr4 13006969 13007017 -142623103 + L2a LINE L2 2723 2770 -649 9 684 248 348 17 17 chr4 13007105 13007222 -142622898 + L2a LINE L2 3310 3426 0 9 684 265 318 18 36 chr4 13008006 13008117 -142622003 - MLT1A0 LTR MaLR 0 365 257 1 684 402 347 78 67 chr4 13008547 13008816 -142621304 - B4 SINE B4 -18 274 3 1 684 588 320 81 14 chr4 13009450 13009672 -142620448 + B4A SINE B4 1 237 -55 1 684 288 0 0 0 chr4 13009683 13009715 -142620405 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 684 228 348 100 60 chr4 13010085 13010235 -142619885 + MLT1H LTR MaLR 47 202 -347 1 684 342 0 0 0 chr4 13011750 13011788 -142618332 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 684 261 298 41 16 chr4 13011798 13011813 -142618307 - L1M LINE L1 -916 5384 5370 1 684 1486 22 6 0 chr4 13011813 13011995 -142618125 - L1Md_A LINE L1 0 6582 6400 1 684 261 298 41 16 chr4 13011995 13012102 -142618018 - L1M LINE L1 -931 5369 5261 1 684 33 25 0 0 chr4 13012102 13012142 -142617978 + AT_rich Low_complexity Low_complexity 1 40 0 1 684 906 223 34 10 chr4 13012253 13012457 -142617663 + B3 SINE B2 1 209 -7 2 684 21 0 0 0 chr4 13012545 13012566 -142617554 + AT_rich Low_complexity Low_complexity 1 21 0 2 684 2422 298 77 60 chr4 13012899 13014198 -142615922 + Lx5 LINE L1 5710 7030 -20 2 684 195 42 0 0 chr4 13014604 13014628 -142615492 + (A)n Simple_repeat Simple_repeat 1 24 0 2 684 369 0 0 0 chr4 13014926 13014967 -142615153 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 684 42 36 0 0 chr4 13015922 13015978 -142614142 + AT_rich Low_complexity Low_complexity 1 56 0 2 684 219 69 0 0 chr4 13019443 13019472 -142610648 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 684 2484 11 0 0 chr4 13021881 13022162 -142607958 - L1Md_A LINE L1 0 6582 6302 2 684 429 273 45 77 chr4 13022986 13023141 -142606979 + RSINE1 SINE B4 5 154 -11 2 684 414 0 0 0 chr4 13023145 13023191 -142606929 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 684 297 149 0 0 chr4 13024715 13024782 -142605338 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 684 252 0 0 0 chr4 13024782 13024810 -142605310 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 684 231 133 0 0 chr4 13024811 13024856 -142605264 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 684 21 36 0 0 chr4 13025450 13025478 -142604642 + AT_rich Low_complexity Low_complexity 1 28 0 3 684 705 251 122 6 chr4 13026736 13026916 -142603204 + B3 SINE B2 3 203 -13 3 684 209 33 0 32 chr4 13026931 13026962 -142603158 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 3 684 279 273 15 0 chr4 13026999 13027065 -142603055 + ID4 SINE ID 3 69 -14 3 684 408 346 32 0 chr4 13027132 13027288 -142602832 - RSINE1 SINE B4 -4 161 1 3 684 46 54 0 0 chr4 13027658 13027732 -142602388 + AT_rich Low_complexity Low_complexity 1 74 0 3 684 867 46 0 0 chr4 13029537 13029645 -142600475 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 684 191 360 22 33 chr4 13029647 13029739 -142600381 - MIR SINE MIR -25 237 147 4 684 32 57 0 0 chr4 13030663 13030716 -142599404 + AT_rich Low_complexity Low_complexity 1 53 0 4 684 237 108 0 0 chr4 13031571 13031608 -142598512 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 4 684 231 340 88 20 chr4 13032071 13032173 -142597947 + PB1D10 SINE Alu 9 117 0 4 684 26 0 0 0 chr4 13032729 13032755 -142597365 + AT_rich Low_complexity Low_complexity 1 26 0 4 684 527 299 185 42 chr4 13033199 13033555 -142596565 - MLT1C LTR MaLR -3 502 96 4 684 308 312 176 26 chr4 13033698 13033925 -142596195 - HAL1-3A_ME LINE L1 -606 2252 1992 4 684 567 175 0 0 chr4 13033925 13034045 -142596075 + CT-rich Low_complexity Low_complexity 2 121 0 4 684 306 0 0 0 chr4 13034045 13034079 -142596041 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 684 227 29 0 54 chr4 13034486 13034523 -142595597 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 684 1615 156 90 22 chr4 13034853 13035174 -142594946 - Lx2B LINE L1 -5 6995 6653 5 684 667 246 25 120 chr4 13035611 13035746 -142594374 + ORR1D1 LTR MaLR 52 182 -192 5 684 261 0 0 0 chr4 13035746 13035775 -142594345 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 684 288 0 0 0 chr4 13035775 13035806 -142594314 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 684 1024 190 20 37 chr4 13035806 13036032 -142594088 + ORR1D1 LTR MaLR 157 370 -4 5 684 186 103 0 0 chr4 13036033 13036062 -142594058 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 684 633 298 56 76 chr4 13036141 13036188 -142593932 + L1ME2 LINE L1 5424 5473 -691 5 684 1295 164 9 5 chr4 13036188 13036408 -142593712 - URR1B DNA MER1_type 0 225 5 5 684 633 298 56 76 chr4 13036408 13036927 -142593193 + L1ME2 LINE L1 5474 5979 -185 5 684 308 358 122 9 chr4 13039439 13039653 -142590467 - MIR SINE MIR 0 262 25 5 684 454 296 70 32 chr4 13040745 13040902 -142589218 - RSINE1 SINE B4 -1 164 2 5 684 203 261 92 0 chr4 13041147 13041212 -142588908 - MIR SINE MIR -79 183 113 5 684 219 146 0 0 chr4 13042043 13042084 -142588036 + (A)n Simple_repeat Simple_repeat 1 41 0 6 684 234 0 0 0 chr4 13042111 13042137 -142587983 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 684 1046 75 0 0 chr4 13042138 13042272 -142587848 - B1_Mus1 SINE Alu -14 134 1 6 684 287 325 38 38 chr4 13043152 13043283 -142586837 - B1F1 SINE Alu -18 131 1 6 684 305 265 119 26 chr4 13043538 13043689 -142586431 - HAL1 LINE L1 -2325 182 18 6 684 435 373 62 22 chr4 13043994 13044219 -142585901 + MIRb SINE MIR 35 268 0 6 684 24 67 0 0 chr4 13044465 13044510 -142585610 + AT_rich Low_complexity Low_complexity 1 45 0 6 684 205 270 0 0 chr4 13044588 13044651 -142585469 + T-rich Low_complexity Low_complexity 3 65 0 6 684 230 339 0 0 chr4 13045072 13045137 -142584983 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 684 341 288 124 39 chr4 13045271 13045553 -142584567 - L1M5 LINE L1 -1693 4453 4148 6 684 37898 30 0 0 chr4 13045824 13052226 -142577894 - L1Md_T LINE L1 0 6585 86 7 684 342 0 0 0 chr4 13052958 13052996 -142577124 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 684 22 0 0 0 chr4 13053051 13053073 -142577047 + AT_rich Low_complexity Low_complexity 1 22 0 7 684 25 51 0 0 chr4 13053267 13053306 -142576814 + AT_rich Low_complexity Low_complexity 1 39 0 7 684 387 0 0 0 chr4 13053519 13053562 -142576558 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 684 287 383 47 0 chr4 13053571 13053699 -142576421 - B1F SINE Alu -5 144 11 7 684 440 171 0 0 chr4 13053680 13053750 -142576370 - ID_B1 SINE B4 -53 171 102 7 684 186 339 156 8 chr4 13054103 13054225 -142575895 + L2a LINE L2 3276 3415 -11 7 684 23 0 0 0 chr4 13055293 13055316 -142574804 + AT_rich Low_complexity Low_complexity 1 23 0 7 684 2426 137 12 9 chr4 13055441 13055861 -142574259 + BGLII LTR ERVK 1 421 0 7 684 625 315 59 21 chr4 13055863 13056100 -142574020 + Lx8 LINE L1 7000 7245 -228 8 684 270 167 0 0 chr4 13056171 13056231 -142573889 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 684 1259 27 0 0 chr4 13057155 13057301 -142572819 + B1_Mm SINE Alu 2 147 0 8 684 4238 249 68 21 chr4 13057739 13058868 -142571252 - ORR1C1-int LTR MaLR -188 1182 1 8 684 1755 210 16 31 chr4 13058868 13059252 -142570868 - ORR1C1 LTR MaLR 0 378 1 8 684 192 40 0 0 chr4 13059390 13059415 -142570705 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 8 684 567 43 0 0 chr4 13059915 13059985 -142570135 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 8 684 268 309 33 99 chr4 13060980 13061131 -142568989 + MLT1F2 LTR MaLR 418 558 -2 8 684 225 0 0 0 chr4 13063776 13063801 -142566319 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 684 257 283 104 68 chr4 13063962 13064125 -142565995 - ORR1E LTR MaLR -162 197 29 8 684 677 348 87 45 chr4 13066288 13066643 -142563477 - LTR16B1 LTR ERVL -87 393 24 8 684 1754 230 44 89 chr4 13066731 13067227 -142562893 - RMER19C LTR ERVK 0 611 138 9 684 441 0 0 0 chr4 13067320 13067369 -142562751 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 684 413 19 19 0 chr4 13067369 13067422 -142562698 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 684 698 114 0 17 chr4 13067690 13067806 -142562314 + (TCCC)n Simple_repeat Simple_repeat 4 117 0 9 684 193 221 14 14 chr4 13067822 13067891 -142562229 + CT-rich Low_complexity Low_complexity 4 72 0 9 684 421 301 18 0 chr4 13068311 13068424 -142561696 + PB1D10 SINE Alu 2 116 -1 9 684 5347 135 38 20 chr4 13069222 13070174 -142559946 - Lx LINE L1 0 6654 5686 9 684 3552 151 40 0 chr4 13070173 13070831 -142559289 + Lx LINE L1 4971 5654 -229 9 684 252 279 16 0 chr4 13072034 13072095 -142558025 + CT-rich Low_complexity Low_complexity 4 65 0 9 684 192 338 0 0 chr4 13073028 13073099 -142557021 + MIRb SINE MIR 171 241 -27 9 684 432 0 0 0 chr4 13073535 13073583 -142556537 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 684 25 0 0 0 chr4 13074349 13074374 -142555746 + AT_rich Low_complexity Low_complexity 1 25 0 1 684 291 175 0 0 chr4 13074816 13074873 -142555247 + T-rich Low_complexity Low_complexity 1 57 0 1 684 31 102 0 0 chr4 13075694 13075802 -142554318 + AT_rich Low_complexity Low_complexity 1 108 0 1 684 191 239 22 0 chr4 13077363 13077409 -142552711 + L2a LINE L2 3376 3422 -4 1 684 402 240 218 17 chr4 13077858 13078032 -142552088 - B3 SINE B2 -6 210 2 1 684 257 313 48 12 chr4 13078157 13078241 -142551879 + B4A SINE B4 193 279 -13 1 684 261 0 0 0 chr4 13078249 13078278 -142551842 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 684 261 408 28 48 chr4 13078444 13078696 -142551424 - MLT1F LTR MaLR -300 248 2 1 684 254 179 18 0 chr4 13080566 13080622 -142549498 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 1 684 27 73 0 0 chr4 13080731 13080786 -142549334 + AT_rich Low_complexity Low_complexity 1 55 0 1 684 360 0 0 0 chr4 13081034 13081074 -142549046 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 684 259 193 0 34 chr4 13081080 13081139 -142548981 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 684 643 352 67 0 chr4 13081277 13081547 -142548573 - B4A SINE B4 -4 288 1 1 684 295 263 131 0 chr4 13082413 13082512 -142547608 + PB1D7 SINE Alu 3 114 -6 1 684 311 248 205 8 chr4 13083820 13083942 -142546178 - HAL1-3A_ME LINE L1 -419 2439 2294 1 684 386 339 75 25 chr4 13087080 13087319 -142542801 + L1ME1 LINE L1 5929 6179 0 1 684 364 321 17 35 chr4 13088380 13088473 -142541647 + B1F SINE Alu 1 91 -58 1 684 1044 297 52 30 chr4 13088473 13088841 -142541279 + MTE2a LTR MaLR 4 379 0 1 684 313 203 0 0 chr4 13088841 13088905 -142541215 + B1F1 SINE Alu 86 149 0 1 684 933 8 0 0 chr4 13089022 13089141 -142540979 + L1Md_T LINE L1 6464 6582 0 1 684 383 299 88 15 chr4 13089379 13089515 -142540605 - B1_Mur2 SINE Alu -1 148 3 1 684 183 304 12 60 chr4 13089563 13089647 -142540473 - L2a LINE L2 0 3426 3347 1 684 234 0 0 0 chr4 13089910 13089936 -142540184 + (T)n Simple_repeat Simple_repeat 1 26 0 1 684 292 252 245 28 chr4 13092229 13092478 -142537642 + Lx9 LINE L1 7341 7643 -1 1 684 437 325 58 54 chr4 13092525 13092730 -142537390 + B4A SINE B4 2 207 -85 1 684 184 379 65 57 chr4 13092762 13093025 -142537095 + MIRb SINE MIR 3 267 -1 1 684 1450 60 11 0 chr4 13093134 13093318 -142536802 + B2_Mm1t SINE B2 1 186 -7 1 684 324 302 92 20 chr4 13093618 13093770 -142536350 - MER20 DNA MER1_type 0 219 57 1 684 1590 155 29 0 chr4 13095169 13095447 -142534673 - L1_Mur2 LINE L1 -6230 482 197 1 684 3620 163 30 12 chr4 13095447 13096086 -142534034 + Lx4A LINE L1 6408 7057 -1 1 684 6594 118 9 28 chr4 13096149 13097228 -142532892 + Lx2 LINE L1 5938 6996 -1 1 684 354 320 76 54 chr4 13098820 13099005 -142531115 - MER5A DNA MER1_type 0 189 1 1 684 28 0 0 0 chr4 13100242 13100270 -142529850 + AT_rich Low_complexity Low_complexity 1 28 0 1 684 212 0 36 0 chr4 13100480 13100508 -142529612 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 684 242 390 30 0 chr4 13101111 13101211 -142528909 + PB1D9 SINE Alu 1 103 -17 1 684 414 0 0 0 chr4 13101384 13101430 -142528690 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 684 363 320 29 48 chr4 13101430 13101535 -142528585 + PB1D10 SINE Alu 15 117 0 1 684 189 0 0 0 chr4 13101551 13101572 -142528548 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 684 530 29 0 0 chr4 13102029 13102099 -142528021 - L1Md_A LINE L1 -2 6580 6511 1 684 820 250 66 5 chr4 13102720 13102917 -142527203 + B3 SINE B2 1 209 -7 1 684 356 283 18 88 chr4 13102988 13103205 -142526915 - RMER17D2 LTR ERVK -379 430 229 1 684 315 0 0 0 chr4 13103663 13103698 -142526422 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1 684 796 209 0 0 chr4 13104617 13104751 -142525369 - B1_Mus2 SINE Alu -10 137 4 1 684 694 301 53 29 chr4 13104895 13105104 -142525016 - B3 SINE B2 -1 215 2 1 684 1791 319 55 85 chr4 13105115 13106294 -142523826 - Lx8 LINE L1 -136 7337 6173 1 684 378 0 0 0 chr4 13106294 13106336 -142523784 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 684 594 357 85 33 chr4 13106336 13106540 -142523580 - Lx8 LINE L1 -1524 6172 5964 1 85 1988 150 10 0 chr4 13107187 13107493 -142522627 + RLTR27 LTR ERVK 1 309 0 1 685 1263 81 0 17 chr4 13107495 13107671 -142522449 + RLTR10-int LTR ERVK 304 476 -1511 1 685 847 52 0 8 chr4 13107945 13108062 -142522058 + IAP-d-int LTR ERVK 40 155 -6387 1 685 500 59 0 14 chr4 13108062 13108131 -142521989 + IAP-d-int LTR ERVK 106 173 -6369 1 685 741 205 0 0 chr4 13108128 13108284 -142521836 + IAP-d-int LTR ERVK 347 502 -6040 1 685 3288 67 88 16 chr4 13108284 13108771 -142521349 + IAP-d-int LTR ERVK 5006 5527 -1015 1 685 4548 93 19 14 chr4 13108819 13109508 -142520612 + RLTR10-int LTR ERVK 1288 1979 -8 1 685 2973 60 54 3 chr4 13109508 13109896 -142520224 + RLTR10A LTR ERVK 4 411 0 1 685 292 95 0 0 chr4 13109934 13109976 -142520144 + MMERVK10C-int LTR ERVK 226 267 -7314 1 685 779 50 0 0 chr4 13109997 13110096 -142520024 + IAP-d-int LTR ERVK 59 157 -6385 1 685 647 332 25 33 chr4 13110635 13111270 -142518850 + IAP-d-int LTR ERVK 6436 7065 -516 1 685 1447 166 8 19 chr4 13111407 13111671 -142518449 + IAP-d-int LTR ERVK 7321 7581 0 1 685 1994 150 10 0 chr4 13111671 13111977 -142518143 + RLTR27 LTR ERVK 1 309 0 1 685 3417 25 5 0 chr4 13113214 13113608 -142516512 + MTA_Mm LTR MaLR 1 396 0 1 685 3085 78 20 11 chr4 13113608 13114061 -142516059 + MTA_Mm-int LTR MaLR 1 457 -641 1 685 10934 59 1 2 chr4 13114061 13116129 -142513991 + L1Md_F2 LINE L1 4478 6542 -40 1 685 251 72 0 23 chr4 13116129 13116172 -142513948 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 685 5074 64 20 3 chr4 13116172 13116880 -142513240 + MTA_Mm-int LTR MaLR 379 1098 0 1 685 3126 44 23 0 chr4 13116880 13117267 -142512853 + MTA_Mm LTR MaLR 1 396 0 1 685 378 61 0 0 chr4 13117330 13117379 -142512741 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 685 331 102 29 14 chr4 13119040 13119110 -142511010 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 1 685 623 13 13 0 chr4 13119113 13119189 -142510931 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 685 411 21 0 0 chr4 13119189 13119236 -142510884 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 685 755 296 33 30 chr4 13119247 13119518 -142510602 - Lx8 LINE L1 -152 7321 7050 1 685 461 294 86 0 chr4 13119621 13119786 -142510334 - Lx8 LINE L1 -673 7023 6848 1 685 529 326 108 19 chr4 13119775 13120191 -142509929 - L1M3 LINE L1 -405 5763 5311 1 685 21 0 0 0 chr4 13120585 13120606 -142509514 + AT_rich Low_complexity Low_complexity 1 21 0 1 685 342 115 0 0 chr4 13121356 13121417 -142508703 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 685 423 0 0 0 chr4 13121445 13121492 -142508628 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 685 243 336 96 24 chr4 13121524 13121649 -142508471 + MER20B DNA MER1_type 29 162 -621 1 685 225 0 0 0 chr4 13124476 13124501 -142505619 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 685 270 276 102 11 chr4 13126269 13126286 -142503834 - PB1D10 SINE Alu -6 111 16 1 685 277 271 14 14 chr4 13126286 13126357 -142503763 - ID_B1 SINE B4 -57 167 97 1 685 208 207 15 7 chr4 13127549 13127685 -142502435 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 1 685 551 299 68 18 chr4 13127754 13127975 -142502145 + Lx9 LINE L1 6310 6541 -1103 1 685 483 18 0 0 chr4 13127981 13128037 -142502083 + (TATG)n Simple_repeat Simple_repeat 3 58 0 1 685 240 59 0 0 chr4 13128794 13128828 -142501292 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 685 443 262 176 27 chr4 13128985 13129173 -142500947 - B3 SINE B2 0 216 1 1 685 226 71 0 87 chr4 13130366 13130412 -142499708 - Lx9 LINE L1 -67 7577 7536 1 685 4015 84 7 2 chr4 13130452 13131001 -142499119 + L1_Mus3 LINE L1 6080 6631 -7 1 685 757 263 28 6 chr4 13131031 13131207 -142498913 - B3A SINE B2 -18 180 1 1 685 345 341 146 8 chr4 13131327 13131847 -142498273 - L1ME2 LINE L1 -12 6152 5561 1 685 271 257 52 26 chr4 13131881 13131997 -142498123 - L1ME2 LINE L1 -952 5492 5374 1 685 187 259 107 36 chr4 13132964 13133048 -142497072 - MIRb SINE MIR -170 98 9 1 685 868 212 12 0 chr4 13133180 13133345 -142496775 - ORR1C1 LTR MaLR 0 378 212 1 685 474 18 0 0 chr4 13134608 13134663 -142495457 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 685 235 282 14 27 chr4 13135277 13135350 -142494770 - L2a LINE L2 -6 3420 3349 1 685 405 331 73 29 chr4 13135672 13135946 -142494174 + B4A SINE B4 5 290 -2 1 685 22 0 0 0 chr4 13137711 13137733 -142492387 + AT_rich Low_complexity Low_complexity 1 22 0 1 685 819 246 69 11 chr4 13138256 13138554 -142491566 + L1M4 LINE L1 3383 3701 -2445 1 685 255 329 19 87 chr4 13138566 13138832 -142491288 + L1MB7 LINE L1 5873 6120 -64 1 685 406 379 89 56 chr4 13138966 13139450 -142490670 + Arthur1 DNA Tip100 85 584 -3363 1 685 560 277 130 79 chr4 13139522 13139890 -142490230 + Arthur1 DNA Tip100 3558 3944 -3 1 685 243 143 18 18 chr4 13140449 13140506 -142489614 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 1 685 376 293 69 0 chr4 13140547 13140663 -142489457 - ORR1E LTR MaLR -7 372 249 1 685 570 297 48 18 chr4 13140685 13140853 -142489267 - ORR1E LTR MaLR -186 173 1 1 685 25 51 0 0 chr4 13141566 13141605 -142488515 + AT_rich Low_complexity Low_complexity 1 39 0 1 685 22 0 0 0 chr4 13144257 13144279 -142485841 + AT_rich Low_complexity Low_complexity 1 22 0 1 685 266 301 41 0 chr4 13144455 13144528 -142485592 + ID4 SINE ID 5 80 -3 1 685 570 126 43 30 chr4 13144532 13144696 -142485424 + G-rich Low_complexity Low_complexity 5 170 0 1 685 534 284 26 0 chr4 13146331 13146447 -142483673 + B3A SINE B2 1 119 -79 1 685 231 370 108 16 chr4 13146447 13146460 -142483660 + B4 SINE B4 1 141 -151 1 685 258 207 0 0 chr4 13146469 13146527 -142483593 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 685 22 56 0 0 chr4 13146557 13146593 -142483527 + AT_rich Low_complexity Low_complexity 1 36 0 1 685 299 287 50 85 chr4 13147208 13147349 -142482771 + MIR SINE MIR 37 172 -90 1 685 306 82 82 0 chr4 13147622 13147695 -142482425 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 1 685 665 343 60 12 chr4 13148523 13148859 -142481261 + MLT1A0 LTR MaLR 1 352 -13 1 685 417 195 31 31 chr4 13149105 13149264 -142480856 + Lx9 LINE L1 7486 7644 0 1 685 722 60 0 10 chr4 13149719 13149820 -142480300 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 2 685 1225 192 125 9 chr4 13149824 13150145 -142479975 - Lx9 LINE L1 -1 7643 7286 2 685 23 33 0 0 chr4 13150152 13150182 -142479938 + AT_rich Low_complexity Low_complexity 1 30 0 2 685 301 218 0 0 chr4 13150206 13150261 -142479859 - B2_Mm2 SINE B2 -94 101 47 2 685 1158 98 12 0 chr4 13150307 13150470 -142479650 - B2_Mm1t SINE B2 -28 165 1 2 685 1908 184 20 26 chr4 13150471 13150861 -142479259 - Lx9 LINE L1 -346 7298 6911 2 685 325 179 20 46 chr4 13151089 13151241 -142478879 + (TATG)n Simple_repeat Simple_repeat 1 148 0 2 685 218 295 0 0 chr4 13151242 13151303 -142478817 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 2 685 414 57 0 0 chr4 13151403 13151456 -142478664 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 685 226 302 34 25 chr4 13151614 13151733 -142478387 - L1MC LINE L1 -2130 5752 5633 2 685 444 19 0 0 chr4 13152763 13152816 -142477304 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 685 186 369 113 0 chr4 13152974 13153142 -142476978 - L2c LINE L2 -223 3164 2978 2 685 543 56 0 0 chr4 13155695 13155766 -142474354 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 685 661 237 118 37 chr4 13157144 13157389 -142472731 + Lx2B LINE L1 6734 6998 -2 2 685 225 94 0 0 chr4 13157637 13157669 -142472451 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 685 541 248 15 39 chr4 13157676 13157806 -142472314 - RSINE1 SINE B4 -36 129 3 2 685 878 109 0 7 chr4 13158750 13158888 -142471232 + (TTCTC)n Simple_repeat Simple_repeat 5 141 0 2 685 322 214 20 10 chr4 13158920 13159019 -142471101 + CT-rich Low_complexity Low_complexity 5 104 0 2 685 311 89 0 18 chr4 13159220 13159277 -142470843 + (CAAA)n Simple_repeat Simple_repeat 3 58 0 2 685 606 249 44 66 chr4 13159290 13159471 -142470649 - MER121 Unknown Unknown -222 190 14 2 685 1079 109 0 0 chr4 13159824 13159971 -142470149 + B1_Mus2 SINE Alu 1 147 0 2 685 210 37 0 0 chr4 13159994 13160021 -142470099 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 685 4934 49 5 0 chr4 13160253 13160861 -142469259 + L1Md_F2 LINE L1 5972 6582 0 2 685 814 276 158 72 chr4 13161347 13161593 -142468527 - MLT1D LTR MaLR 0 505 215 2 685 870 10 0 0 chr4 13161593 13161692 -142468428 + (TC)n Simple_repeat Simple_repeat 1 99 0 2 685 312 27 0 0 chr4 13161692 13161728 -142468392 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 685 814 276 158 72 chr4 13161728 13161914 -142468206 - MLT1D LTR MaLR -291 214 35 2 685 592 246 43 7 chr4 13161914 13162053 -142468067 - MTE2a LTR MaLR 0 379 236 2 685 546 189 0 0 chr4 13162237 13162348 -142467772 + T-rich Low_complexity Low_complexity 1 111 0 2 685 412 320 23 23 chr4 13165179 13165355 -142464765 - B4A SINE B4 -48 244 69 2 685 198 366 67 16 chr4 13166778 13166972 -142463148 - L2 LINE L2 -469 2950 2747 2 685 190 211 154 0 chr4 13167511 13167563 -142462557 - L2a LINE L2 -281 3145 3086 2 685 218 248 6 0 chr4 13169909 13170066 -142460054 + (CA)n Simple_repeat Simple_repeat 1 158 0 2 685 262 230 8 16 chr4 13170117 13170245 -142459875 + (CATA)n Simple_repeat Simple_repeat 4 130 0 2 685 231 202 0 0 chr4 13171042 13171097 -142459023 + L1M2 LINE L1 5849 5903 -388 2 685 3420 131 39 4 chr4 13171613 13172174 -142457946 - Lx2 LINE L1 -173 6824 6244 2 685 420 20 0 0 chr4 13172211 13172260 -142457860 + (T)n Simple_repeat Simple_repeat 1 49 0 2 685 525 310 40 98 chr4 13173002 13173401 -142456719 + MLT1B LTR MaLR 1 382 -8 2 685 411 21 0 0 chr4 13173401 13173449 -142456671 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 685 22 0 0 0 chr4 13175574 13175596 -142454524 + AT_rich Low_complexity Low_complexity 1 22 0 2 685 227 388 8 8 chr4 13176552 13176669 -142453451 - MamRep4096 DNA hAT? -284 142 26 2 685 650 292 24 5 chr4 13177626 13177839 -142452281 - ID_B1 SINE B4 -4 220 4 2 685 192 83 20 40 chr4 13178089 13178139 -142451981 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 685 223 398 136 0 chr4 13178175 13178278 -142451842 + PB1D10 SINE Alu 1 117 0 2 685 203 88 29 0 chr4 13178290 13178324 -142451796 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 2 685 3449 23 0 5 chr4 13179072 13179470 -142450650 + MTA_Mm LTR MaLR 1 396 0 2 685 1390 145 4 4 chr4 13180218 13180439 -142449681 + Lx3A LINE L1 6746 6966 -15 2 685 234 62 0 0 chr4 13180439 13180471 -142449649 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 685 1390 145 4 4 chr4 13180471 13180485 -142449635 + Lx3A LINE L1 6967 6980 -1 2 685 537 92 0 0 chr4 13180642 13180718 -142449402 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 685 800 287 102 69 chr4 13181255 13181618 -142448502 + MTEb LTR MaLR 3 377 -2 2 685 3617 296 86 83 chr4 13181654 13183173 -142446947 + MTE-int LTR MaLR 48 1571 -9 2 685 315 271 82 27 chr4 13183381 13183491 -142446629 + MTEa LTR MaLR 255 370 -9 2 685 822 309 12 136 chr4 13184569 13184899 -142445221 + B4A SINE B4 4 292 0 2 685 424 68 27 0 chr4 13186299 13186372 -142443748 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 685 1496 286 34 15 chr4 13186544 13186952 -142443168 - MamRep137 DNA TcMar? -22 422 7 2 685 7008 56 7 49 chr4 13187712 13188727 -142441393 - L1Md_F2 LINE L1 0 6582 5611 2 685 566 61 24 0 chr4 13189538 13189620 -142440500 + (GGAGA)n Simple_repeat Simple_repeat 5 88 0 2 685 419 333 58 34 chr4 13189938 13190143 -142439977 - L3b LINE CR1 -37 445 236 2 685 1489 197 99 41 chr4 13191461 13191853 -142438267 + MTC LTR MaLR 5 419 -2 2 685 207 0 0 0 chr4 13192868 13192891 -142437229 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 685 369 0 0 0 chr4 13192891 13192931 -142437189 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 685 261 370 54 20 chr4 13193861 13194010 -142436110 + MIR SINE MIR 11 164 -98 2 685 456 123 0 0 chr4 13194131 13194204 -142435916 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2 685 278 273 65 0 chr4 13194208 13194285 -142435835 + PB1D7 SINE Alu 2 83 -37 2 685 219 346 37 0 chr4 13195271 13195352 -142434768 - MIR3 SINE MIR -26 182 99 2 685 1193 131 35 10 chr4 13196164 13196364 -142433756 + RLTR17 LTR ERVK 98 302 -390 2 685 266 0 0 29 chr4 13196388 13196423 -142433697 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 685 1047 53 0 0 chr4 13196423 13196554 -142433566 - B1_Mus2 SINE Alu -10 137 7 2 685 2233 51 0 0 chr4 13196558 13196832 -142433288 - L1_Mus1 LINE L1 -8 6559 6286 2 685 1697 176 99 32 chr4 13196833 13197208 -142432912 + RLTR17 LTR ERVK 292 691 -1 2 685 698 105 9 0 chr4 13199056 13199170 -142430950 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 685 597 272 77 0 chr4 13200245 13200414 -142429706 - B3A SINE B2 -16 182 1 2 685 237 65 0 0 chr4 13200782 13200813 -142429307 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2 685 240 206 45 60 chr4 13200853 13200920 -142429200 - MLT1G1 LTR MaLR -185 394 329 2 685 1273 283 63 31 chr4 13200945 13201434 -142428686 - MLT1D LTR MaLR 0 505 1 2 685 279 300 79 57 chr4 13201434 13201586 -142428534 - MLT1G1 LTR MaLR -332 263 97 2 685 593 263 246 0 chr4 13201864 13202092 -142428028 + B4A SINE B4 9 292 0 2 685 507 201 0 0 chr4 13202092 13202241 -142427879 + (CA)n Simple_repeat Simple_repeat 1 149 0 2 685 244 273 65 0 chr4 13202309 13202386 -142427734 + MIRc SINE MIR 72 153 -115 2 685 185 279 59 0 chr4 13202789 13202857 -142427263 - MIRc SINE MIR -36 232 161 2 685 1372 106 0 22 chr4 13203424 13203646 -142426474 - Lx2 LINE L1 -6 6991 6775 2 685 468 149 11 0 chr4 13203646 13203733 -142426387 - Lx2 LINE L1 -354 6643 6556 2 685 309 82 13 52 chr4 13204237 13204314 -142425806 + (CAAAAA)n Simple_repeat Simple_repeat 5 78 0 2 685 1336 138 5 5 chr4 13204345 13204564 -142425556 - Lx4A LINE L1 -247 6811 6593 2 685 1119 158 10 10 chr4 13204564 13204756 -142425364 + Lx4A LINE L1 6866 7057 -1 2 685 387 192 0 0 chr4 13204767 13204845 -142425275 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 685 838 9 19 9 chr4 13204846 13204953 -142425167 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 2 685 4971 101 29 6 chr4 13205095 13205720 -142424400 + Lx3A LINE L1 6229 6854 -127 2 685 468 0 0 0 chr4 13205720 13205772 -142424348 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 685 4971 101 29 6 chr4 13205772 13205874 -142424246 + Lx3A LINE L1 6855 6973 -8 2 685 32 26 0 0 chr4 13205874 13205913 -142424207 + AT_rich Low_complexity Low_complexity 1 39 0 2 685 1250 41 0 0 chr4 13206403 13206549 -142423571 + B1_Mus1 SINE Alu 2 147 -1 2 685 378 0 0 0 chr4 13206558 13206600 -142423520 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 2 685 708 264 29 24 chr4 13207025 13207231 -142422889 + Lx7 LINE L1 6599 6805 -891 2 685 624 141 0 0 chr4 13207240 13207375 -142422745 + (TC)n Simple_repeat Simple_repeat 2 136 0 2 685 1362 282 48 24 chr4 13207526 13208030 -142422090 + Lx7 LINE L1 6818 7333 -363 2 685 658 305 67 45 chr4 13208624 13209068 -142421052 - Lx9 LINE L1 -27 7617 7160 2 685 1133 199 247 36 chr4 13209068 13209433 -142420687 - RMER10A LTR ERVL 0 442 1 2 685 658 273 23 15 chr4 13209433 13209545 -142420575 - Lx9 LINE L1 -485 7159 6977 2 685 639 0 0 0 chr4 13209545 13209616 -142420504 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 685 1330 324 40 17 chr4 13209636 13210167 -142419953 + Lx9 LINE L1 6367 6909 -735 2 685 26 0 0 0 chr4 13210380 13210406 -142419714 + AT_rich Low_complexity Low_complexity 1 26 0 2 685 853 322 114 40 chr4 13210474 13210949 -142419171 + LTR84a LTR ERVL 6 515 -242 2 685 669 360 13 33 chr4 13211299 13211598 -142418522 + LTR16C LTR ERVL 75 367 -122 2 685 221 324 88 0 chr4 13211642 13211710 -142418410 - FLAM_A SINE Alu -221 74 1 2 685 21 36 0 0 chr4 13213765 13213793 -142416327 + AT_rich Low_complexity Low_complexity 1 28 0 2 685 230 291 13 0 chr4 13215318 13215397 -142414723 + Lx8 LINE L1 7148 7227 -246 2 685 335 174 0 11 chr4 13216012 13216099 -142414021 + (TTTAG)n Simple_repeat Simple_repeat 1 86 0 2 685 237 128 0 0 chr4 13216181 13216228 -142413892 + (T)n Simple_repeat Simple_repeat 1 47 0 2 685 6326 52 0 2 chr4 13216243 13217033 -142413087 - L1Md_F2 LINE L1 -12 6570 5783 3 685 36318 29 1 0 chr4 13217038 13223717 -142406403 - L1Md_T LINE L1 -12 6573 2 3 685 181 268 37 93 chr4 13223727 13223834 -142406286 - L3b LINE CR1 -185 297 197 3 685 346 268 0 0 chr4 13224762 13224833 -142405287 + MER5A1 DNA MER1_type 3 73 -93 3 685 479 306 9 0 chr4 13224844 13224952 -142405168 + PB1D10 SINE Alu 7 115 -2 3 685 631 270 44 15 chr4 13226416 13226619 -142403501 - ID_B1 SINE B4 -14 210 2 3 685 812 175 195 5 chr4 13228376 13228566 -142401554 + URR1A DNA MER1_type 1 226 0 3 685 1645 298 58 29 chr4 13229123 13229852 -142400268 + Lx9 LINE L1 6550 7299 -345 3 685 554 27 27 0 chr4 13230424 13230499 -142399621 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 685 261 328 0 0 chr4 13232367 13232425 -142397695 + MER45B DNA Tip100 46 103 -937 3 685 323 0 48 0 chr4 13233305 13233347 -142396773 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 685 1016 111 0 0 chr4 13233347 13233482 -142396638 - B1_Mus1 SINE Alu -13 135 1 3 685 3857 53 0 2 chr4 13233484 13233958 -142396162 - L1Md_F3 LINE L1 -15 6569 6097 3 685 244 0 0 0 chr4 13233959 13233988 -142396132 + L1Md_F3 LINE L1 6061 6089 -495 3 685 1320 68 60 42 chr4 13233991 13234206 -142395914 - Lx LINE L1 -4 6650 6432 3 685 672 331 71 71 chr4 13234585 13235050 -142395070 - MLT1C LTR MaLR -2 465 1 3 685 200 209 23 0 chr4 13235198 13235241 -142394879 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 3 685 235 335 86 35 chr4 13236268 13236525 -142393595 - L2 LINE L2 -2182 1237 968 3 685 539 53 13 0 chr4 13237028 13237103 -142393017 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 685 824 159 0 14 chr4 13237592 13237732 -142392388 + B1_Mus1 SINE Alu 5 142 -6 3 685 252 328 98 59 chr4 13238021 13238225 -142391895 - MLT1K LTR MaLR -256 339 128 3 686 2923 49 0 24 chr4 13238503 13238877 -142391243 + L1_Mus1 LINE L1 6198 6562 -5 3 686 2279 222 19 20 chr4 13239359 13239897 -142390223 - Lx6 LINE L1 -3 7457 6921 3 686 799 227 190 0 chr4 13239900 13240142 -142389978 + Lx6 LINE L1 6670 6957 -503 3 686 219 328 0 0 chr4 13240441 13240502 -142389618 + (TATG)n Simple_repeat Simple_repeat 4 64 0 3 686 318 91 403 0 chr4 13242181 13242258 -142387862 + L1_Mus2 LINE L1 6453 6560 -6 3 686 2310 139 83 32 chr4 13242960 13243369 -142386751 + RLTR23 LTR ERV1 1 430 0 3 686 443 287 0 0 chr4 13243590 13243677 -142386443 + RSINE1 SINE B4 2 88 -77 3 686 474 296 89 116 chr4 13243835 13244395 -142385725 - RMER20B LTR ERVK -227 681 96 3 686 315 219 15 15 chr4 13244492 13244557 -142385563 + RSINE1 SINE B4 75 139 -26 3 686 201 355 83 42 chr4 13245612 13245756 -142384364 - L2b LINE L2 -5 3370 3221 3 686 312 224 45 39 chr4 13247331 13247454 -142382666 - MLT1J LTR MaLR -3 607 419 3 686 2400 145 47 62 chr4 13248215 13248419 -142381701 - L1_Mur3 LINE L1 -1846 4034 3850 3 686 288 0 0 0 chr4 13248419 13248451 -142381669 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 686 2400 145 47 62 chr4 13248451 13248560 -142381560 - L1_Mur3 LINE L1 -2031 3849 3734 3 686 405 0 0 0 chr4 13248560 13248605 -142381515 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 686 2400 152 74 59 chr4 13248605 13248908 -142381212 - L1_Mur3 LINE L1 -2147 3733 3356 3 686 591 112 0 0 chr4 13249005 13249094 -142381026 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 686 704 272 59 46 chr4 13249688 13249927 -142380193 + B4A SINE B4 1 242 -50 3 686 213 274 39 0 chr4 13250643 13250745 -142379375 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 686 244 376 10 19 chr4 13252664 13252767 -142377353 + MLT1J1 LTR MaLR 84 185 -259 3 686 409 332 90 40 chr4 13253917 13254118 -142376002 + B4 SINE B4 48 258 -34 3 686 458 240 160 0 chr4 13255076 13255226 -142374894 - L1MA5 LINE L1 -30 6270 6097 3 686 2253 128 33 24 chr4 13255479 13255902 -142374218 - Lx2 LINE L1 -775 6222 5796 3 686 2695 113 0 16 chr4 13255900 13256323 -142373797 + Lx2 LINE L1 6230 6645 -352 3 686 1048 128 40 35 chr4 13256321 13256523 -142373597 + Lx2 LINE L1 6775 6977 -20 3 686 258 162 229 29 chr4 13256878 13256948 -142373172 + LTR31 LTR ERV1 272 355 -264 3 686 597 177 0 0 chr4 13257905 13258018 -142372102 + CT-rich Low_complexity Low_complexity 3 115 0 3 686 203 342 48 48 chr4 13258245 13258371 -142371749 - L2c LINE L2 0 3387 3262 3 686 204 310 117 29 chr4 13258374 13258477 -142371643 - L2c LINE L2 0 3387 3276 3 686 236 319 14 0 chr4 13258690 13258759 -142371361 + ORR1E LTR MaLR 1 70 -289 3 686 1373 183 120 26 chr4 13259524 13259866 -142370254 + ORR1D1 LTR MaLR 1 374 0 3 686 303 340 130 23 chr4 13261739 13262170 -142367950 + Lx8 LINE L1 6991 7467 -6 3 686 393 22 0 0 chr4 13262282 13262328 -142367792 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 686 387 0 0 0 chr4 13262487 13262530 -142367590 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 686 397 286 116 42 chr4 13263160 13263350 -142366770 - MIRc SINE MIR -27 241 38 3 686 549 324 24 42 chr4 13265726 13265939 -142364181 + B4A SINE B4 68 276 -16 3 686 396 321 55 97 chr4 13266354 13266571 -142363549 + B3 SINE B2 9 216 0 3 686 375 60 0 0 chr4 13267918 13267968 -142362152 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 686 468 122 0 0 chr4 13267968 13268050 -142362070 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 686 424 248 8 8 chr4 13268050 13268168 -142361952 - L1M2 LINE L1 -518 5779 5662 3 686 606 138 0 0 chr4 13272108 13272231 -142357889 + (TC)n Simple_repeat Simple_repeat 2 124 0 3 686 360 0 0 0 chr4 13272231 13272271 -142357849 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 686 782 320 42 35 chr4 13273076 13274056 -142356064 - L1MA5 LINE L1 -364 5936 4903 3 686 286 173 27 0 chr4 13274068 13274143 -142355977 + GA-rich Low_complexity Low_complexity 3 79 0 3 686 357 125 0 0 chr4 13274435 13274491 -142355629 + (CAA)n Simple_repeat Simple_repeat 2 57 0 3 686 2020 138 82 25 chr4 13274563 13274928 -142355192 - ORR1B1 LTR MaLR -8 386 1 3 686 431 234 54 8 chr4 13275831 13275960 -142354160 - MER105 DNA DNA -20 184 50 3 686 213 245 0 19 chr4 13276097 13276151 -142353969 + (TATG)n Simple_repeat Simple_repeat 4 56 0 3 686 522 255 18 5 chr4 13277409 13277534 -142352586 + ORR1D1 LTR MaLR 248 370 0 3 686 2847 70 0 5 chr4 13277661 13278032 -142352088 + RLTR13D5 LTR ERVK 1 369 -654 3 686 3245 93 13 4 chr4 13278008 13278461 -142351659 + RLTR13D5 LTR ERVK 567 1023 0 3 686 26 0 0 0 chr4 13279416 13279442 -142350678 + AT_rich Low_complexity Low_complexity 1 26 0 3 686 7333 80 1 0 chr4 13279591 13281002 -142349118 + L1_Mus1 LINE L1 5154 6565 -2 3 686 224 59 0 29 chr4 13281161 13281196 -142348924 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 3 686 21 0 0 0 chr4 13281354 13281375 -142348745 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 343 365 103 17 chr4 13281594 13281790 -142348330 + B4A SINE B4 56 282 -10 3 686 3541 20 0 0 chr4 13282345 13282741 -142347379 - MTA_Mm LTR MaLR 0 396 1 3 686 570 124 0 0 chr4 13282778 13282867 -142347253 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 686 333 47 0 0 chr4 13283747 13283790 -142346330 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 686 564 284 31 18 chr4 13284819 13285048 -142345072 + MER121 Unknown Unknown 59 290 -122 3 686 250 176 122 0 chr4 13285748 13285822 -142344298 + L1MEd LINE L1 737 819 -5300 3 686 24 0 0 0 chr4 13285906 13285930 -142344190 + AT_rich Low_complexity Low_complexity 1 24 0 3 686 382 285 9 2 chr4 13286600 13286694 -142343426 + ID_B1 SINE B4 2 100 -192 3 686 1011 279 101 35 chr4 13286695 13287040 -142343080 - ORR1D2 LTR MaLR 0 370 3 3 686 538 271 23 8 chr4 13287040 13287168 -142342952 + ID_B1 SINE B4 93 222 -2 3 686 595 258 38 44 chr4 13287525 13287683 -142342437 - MTE2a LTR MaLR -73 306 150 3 686 265 312 64 0 chr4 13287708 13287817 -142342303 - L1M3 LINE L1 -1527 4613 4498 3 686 887 236 141 48 chr4 13287833 13288167 -142341953 + ORR1E LTR MaLR 7 367 -3 3 686 1050 284 45 40 chr4 13288254 13288643 -142341477 + MTE2a LTR MaLR 1 399 -20 3 686 29 0 0 0 chr4 13288656 13288685 -142341435 + AT_rich Low_complexity Low_complexity 1 29 0 3 686 207 0 0 0 chr4 13288754 13288777 -142341343 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 686 612 277 36 6 chr4 13289090 13289257 -142340863 + B3 SINE B2 40 211 -5 3 686 369 372 41 0 chr4 13289284 13289429 -142340691 + MLT1C LTR MaLR 303 453 -14 3 686 376 254 0 149 chr4 13289762 13289896 -142340224 - MTE2a LTR MaLR -259 125 12 3 686 22 56 0 0 chr4 13290185 13290221 -142339899 + AT_rich Low_complexity Low_complexity 1 36 0 3 686 210 37 0 0 chr4 13291316 13291343 -142338777 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 686 216 0 0 0 chr4 13291355 13291379 -142338741 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 686 34481 67 1 14 chr4 13293831 13299397 -142330723 + L1Md_F2 LINE L1 466 5950 -632 3 686 243 265 85 85 chr4 13299939 13300104 -142330016 - RMER15 LTR ERVL -353 222 58 3 686 2490 71 0 0 chr4 13300104 13300430 -142329690 - L1Md_T LINE L1 0 6582 6257 3 686 312 27 0 0 chr4 13300511 13300548 -142329572 + (TCC)n Simple_repeat Simple_repeat 1 37 0 3 686 325 335 101 53 chr4 13300856 13301064 -142329056 - ORR1E LTR MaLR -107 252 35 3 686 306 261 0 0 chr4 13301281 13301346 -142328774 + B4 SINE B4 82 146 -146 3 686 375 23 0 0 chr4 13302487 13302531 -142327589 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 686 1519 49 22 0 chr4 13302613 13302798 -142327322 - B2_Mm1a SINE B2 -3 190 2 3 686 21 0 0 0 chr4 13302859 13302880 -142327240 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 636 14 0 0 chr4 13302995 13303068 -142327052 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 686 309 365 31 26 chr4 13303118 13303312 -142326808 - L1ME4a LINE L1 -239 5885 5691 3 686 192 366 169 7 chr4 13303388 13303542 -142326578 - MIRb SINE MIR -23 245 67 3 686 215 298 18 0 chr4 13303558 13303615 -142326505 + ID2 SINE ID 23 80 -3 3 686 253 274 25 42 chr4 13303940 13304058 -142326062 - L1MA7 LINE L1 -10 6281 6166 4 686 319 349 54 31 chr4 13304110 13304240 -142325880 + B1F SINE Alu 2 134 -15 4 686 4256 105 6 0 chr4 13304256 13304884 -142325236 - L1_Mus4 LINE L1 -178 6458 5827 4 686 2010 47 8 4 chr4 13304908 13305164 -142324956 - L1Md_F3 LINE L1 -15 6569 6313 4 686 621 207 11 34 chr4 13305164 13305339 -142324781 + L1VL1 LINE L1 115 285 -6137 4 686 313 262 0 0 chr4 13305344 13305424 -142324696 + L1Md_F LINE L1 439 518 -6001 4 686 6255 60 5 22 chr4 13305424 13306537 -142323583 - L1Md_A LINE L1 -3786 2097 1020 4 686 18162 152 8 27 chr4 13306535 13307361 -142322759 - L1VL4 LINE L1 -1165 4718 3936 4 686 2106 74 0 0 chr4 13307361 13307630 -142322490 - L1_Mus1 LINE L1 0 6567 6299 4 686 18162 152 8 27 chr4 13307630 13309521 -142320599 - L1VL4 LINE L1 -1948 3935 2087 4 686 183 42 0 0 chr4 13309521 13309545 -142320575 + (TTG)n Simple_repeat Simple_repeat 3 26 0 4 686 18162 141 14 22 chr4 13309545 13310774 -142319346 - L1VL4 LINE L1 -3797 2086 838 4 686 300 339 16 5 chr4 13310803 13310990 -142319130 - L1VL4 LINE L1 -5897 760 572 4 686 21 57 0 0 chr4 13311129 13311164 -142318956 + AT_rich Low_complexity Low_complexity 1 35 0 4 686 318 383 32 76 chr4 13311236 13311646 -142318474 - LTR16E1 LTR ERVL -1 537 146 4 686 589 310 50 46 chr4 13311824 13312105 -142318015 + B4A SINE B4 3 284 -8 4 686 656 291 43 17 chr4 13312314 13312636 -142317484 - MTE2b LTR MaLR -9 370 2 4 686 244 307 55 109 chr4 13312965 13313166 -142316954 + MTEa LTR MaLR 6 195 -175 4 686 285 214 39 39 chr4 13313369 13313471 -142316649 + MTEa LTR MaLR 278 379 0 4 686 258 305 30 22 chr4 13313478 13313612 -142316508 - HAL1 LINE L1 -818 1689 1555 4 686 1047 176 75 9 chr4 13314055 13314267 -142315853 + URR1A DNA MER1_type 1 226 0 4 686 884 263 70 53 chr4 13314635 13314936 -142315184 + MTEa LTR MaLR 74 379 0 4 686 501 364 56 62 chr4 13314937 13315455 -142314665 - HAL1 LINE L1 -1887 620 106 4 686 1443 245 73 68 chr4 13315512 13316016 -142314104 - RLTR11A2 LTR ERVK -14 513 7 4 686 187 54 26 26 chr4 13317650 13317688 -142312432 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 686 536 272 74 104 chr4 13319436 13319666 -142310454 - ID_B1 SINE B4 -1 223 1 4 686 414 316 8 41 chr4 13319914 13320036 -142310084 + PB1D7 SINE Alu 2 119 -1 4 686 207 175 0 0 chr4 13320057 13320114 -142310006 + GA-rich Low_complexity Low_complexity 2 58 0 4 686 1103 136 73 47 chr4 13320720 13320952 -142309168 - L1_Mur3 LINE L1 -129 5751 5514 4 686 3126 238 48 59 chr4 13320935 13321158 -142308962 + Lx6 LINE L1 5790 6010 -1450 4 686 2391 70 15 6 chr4 13321158 13321488 -142308632 + L1Md_F2 LINE L1 6250 6582 0 4 686 3126 238 48 59 chr4 13321488 13321917 -142308203 + Lx6 LINE L1 6011 6421 -1039 4 686 2536 26 0 10 chr4 13321917 13322224 -142307896 + L1Md_F3 LINE L1 6270 6573 -11 4 686 3126 238 48 59 chr4 13322224 13322525 -142307595 + Lx6 LINE L1 6422 6734 -726 4 686 1594 141 124 0 chr4 13322525 13322816 -142307304 + IAPEY3_LTR LTR ERVK 1 327 -5 4 686 1541 231 45 3 chr4 13322821 13323203 -142306917 + Lx6 LINE L1 6731 7128 -332 4 686 247 327 25 13 chr4 13323203 13323361 -142306759 + (TATATG)n Simple_repeat Simple_repeat 3 162 0 4 686 805 294 17 94 chr4 13323394 13323691 -142306429 - B4A SINE B4 -18 274 1 4 686 21 0 0 0 chr4 13324048 13324069 -142306051 + AT_rich Low_complexity Low_complexity 1 21 0 4 686 369 0 0 0 chr4 13324356 13324397 -142305723 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 686 26 30 0 0 chr4 13325615 13325648 -142304472 + AT_rich Low_complexity Low_complexity 1 33 0 4 686 312 27 0 0 chr4 13327344 13327381 -142302739 + (TTG)n Simple_repeat Simple_repeat 2 38 0 4 686 459 63 0 0 chr4 13328024 13328087 -142302033 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 4 686 201 121 0 0 chr4 13328142 13328175 -142301945 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 686 272 27 27 0 chr4 13328175 13328211 -142301909 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 686 700 254 55 0 chr4 13328241 13328442 -142301678 + B3 SINE B2 4 215 -1 4 686 447 52 0 0 chr4 13328947 13329005 -142301115 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 686 2291 117 3 0 chr4 13329132 13329458 -142300662 + ORR1A2 LTR MaLR 1 327 0 4 686 217 171 0 0 chr4 13330400 13330435 -142299685 + BC1_Mm scRNA scRNA 8 42 -110 4 686 269 228 27 32 chr4 13330642 13330731 -142299389 + B4 SINE B4 6 92 -200 4 686 249 83 0 0 chr4 13331405 13331441 -142298679 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 686 3560 35 28 9 chr4 13332924 13333352 -142296768 + RLTR10C LTR ERVK 1 436 0 4 686 354 23 0 0 chr4 13333794 13333837 -142296283 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 686 369 0 0 0 chr4 13334960 13335001 -142295119 + (TTA)n Simple_repeat Simple_repeat 1 41 0 4 686 225 0 0 0 chr4 13335081 13335106 -142295014 + (T)n Simple_repeat Simple_repeat 1 25 0 4 686 243 61 0 0 chr4 13335311 13335344 -142294776 + (A)n Simple_repeat Simple_repeat 1 33 0 4 686 207 200 0 52 chr4 13336876 13336934 -142293186 + A-rich Low_complexity Low_complexity 4 58 0 4 686 243 0 0 0 chr4 13337349 13337376 -142292744 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 686 282 170 125 3 chr4 13339974 13340064 -142290056 + MIRc SINE MIR 71 165 -43 4 686 237 65 0 0 chr4 13341393 13341424 -142288696 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 686 626 267 65 22 chr4 13341608 13341792 -142288328 + B3A SINE B2 6 197 -1 4 686 3149 51 5 15 chr4 13342739 13343137 -142286983 + MTA_Mm LTR MaLR 1 394 -2 4 686 513 113 36 41 chr4 13343370 13343602 -142286518 + (TG)n Simple_repeat Simple_repeat 1 230 0 4 686 317 329 93 0 chr4 13343791 13344016 -142286104 - L1M5 LINE L1 -469 5655 5410 4 686 1471 67 9 9 chr4 13345747 13345958 -142284162 - L1_Mus3 LINE L1 -7 6631 6421 4 686 3488 102 9 11 chr4 13346146 13346519 -142283601 - L1_Mm LINE L1 -206 5677 5307 4 686 3038 26 0 0 chr4 13346519 13346865 -142283255 - ORR1A0 LTR MaLR 0 346 1 4 686 3488 102 9 11 chr4 13346865 13347027 -142283093 - L1_Mm LINE L1 -577 5306 5143 4 686 6451 64 6 0 chr4 13347026 13347881 -142282239 + L1_Mus1 LINE L1 5708 6567 0 4 686 444 70 113 0 chr4 13347897 13347968 -142282152 + Lx3C LINE L1 5783 5861 -1115 4 686 203 338 75 8 chr4 13348223 13348357 -142281763 - MIRb SINE MIR -68 200 58 4 686 1503 211 37 92 chr4 13348497 13348952 -142281168 - RLTR23 LTR ERV1 0 430 1 4 686 347 243 64 57 chr4 13349142 13349299 -142280821 + Lx5 LINE L1 6885 7042 -8 4 686 398 385 48 0 chr4 13349474 13349682 -142280438 - L1MEg LINE L1 -3778 2368 2151 4 686 351 301 41 57 chr4 13349864 13350058 -142280062 - L1MEg LINE L1 -4405 1837 1647 4 686 405 334 72 58 chr4 13350389 13350805 -142279315 - L1MEg LINE L1 -5195 1047 626 4 686 1187 162 192 4 chr4 13351185 13351451 -142278669 - RMER19B LTR ERVK 0 902 587 4 686 446 208 94 94 chr4 13351430 13351600 -142278520 - RMER19B LTR ERVK -732 170 1 4 686 198 333 101 67 chr4 13351601 13351720 -142278400 - L2c LINE L2 -154 3233 3111 4 686 293 281 10 40 chr4 13352270 13352370 -142277750 - MIR SINE MIR -30 232 136 4 686 36280 31 1 0 chr4 13352371 13359664 -142270456 - L1Md_T LINE L1 0 6585 1 4 686 202 211 70 0 chr4 13359665 13359722 -142270398 - MIR SINE MIR -114 148 88 4 686 276 385 26 67 chr4 13359723 13359918 -142270202 + MLT1B LTR MaLR 4 190 -405 4 686 707 221 40 23 chr4 13360192 13360368 -142269752 + B3A SINE B2 4 182 -16 4 686 352 290 0 0 chr4 13360387 13360607 -142269513 + (CA)n Simple_repeat Simple_repeat 1 220 0 4 686 243 0 0 0 chr4 13361887 13361914 -142268206 + (A)n Simple_repeat Simple_repeat 1 27 0 4 686 344 268 61 26 chr4 13361914 13362029 -142268091 + MLT1B LTR MaLR 260 378 -12 4 686 727 237 92 0 chr4 13362199 13362372 -142267748 - B3 SINE B2 0 216 28 4 686 645 183 83 0 chr4 13362373 13362542 -142267578 - Lx9 LINE L1 -9 7635 7453 4 686 200 125 0 24 chr4 13362606 13362647 -142267473 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 686 182 280 20 0 chr4 13363082 13363132 -142266988 - MER5B DNA MER1_type -37 141 91 4 686 187 297 0 51 chr4 13364454 13364532 -142265588 - MIRb SINE MIR -56 212 139 4 686 459 374 83 14 chr4 13364628 13364905 -142265215 + LTR40a LTR ERVL 1 296 -223 4 686 1761 280 46 20 chr4 13365930 13367020 -142263100 - Lx5 LINE L1 -46 7004 5973 4 686 3925 94 71 3 chr4 13367080 13367668 -142262452 - L1_Mus4 LINE L1 0 6636 6009 4 686 2962 86 5 9 chr4 13367668 13368216 -142261904 + L1_Mus4 LINE L1 5455 6000 -636 4 686 322 228 10 10 chr4 13368791 13368893 -142261227 + GA-rich Low_complexity Low_complexity 3 104 0 4 687 259 334 29 37 chr4 13369757 13369876 -142260244 - MIR SINE MIR -94 182 63 4 687 284 277 61 18 chr4 13369877 13369991 -142260129 + PB1D7 SINE Alu 1 119 -1 4 687 877 151 6 6 chr4 13369992 13370159 -142259961 + GA-rich Low_complexity Low_complexity 1 167 0 4 687 223 237 38 50 chr4 13371595 13371675 -142258445 - L2c LINE L2 -12 3375 3297 4 687 8468 135 39 1 chr4 13372298 13373888 -142256232 - Lx4A LINE L1 -2 7056 5396 4 687 4321 105 24 10 chr4 13373892 13374601 -142255519 + Lx4A LINE L1 4686 5404 -473 4 687 224 361 77 88 chr4 13374909 13374947 -142255173 + B4 SINE B4 61 172 -120 4 687 332 285 114 0 chr4 13374947 13375070 -142255050 + B1_Mur4 SINE Alu 14 150 0 4 687 224 361 77 88 chr4 13375070 13375091 -142255029 + B4 SINE B4 173 240 -52 4 687 455 325 67 13 chr4 13376128 13376440 -142253680 + L1MB7 LINE L1 5856 6184 0 4 687 257 0 30 0 chr4 13376595 13376628 -142253492 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 687 341 282 0 12 chr4 13376634 13376720 -142253400 - MLT2B4 LTR ERVL -147 409 325 4 687 215 233 33 16 chr4 13376752 13376813 -142253307 + GA-rich Low_complexity Low_complexity 3 64 0 4 687 357 265 61 75 chr4 13376876 13377023 -142253097 + MLT1A0 LTR MaLR 2 146 -219 4 687 278 384 29 0 chr4 13377232 13377370 -142252750 - MLT2B4 LTR ERVL -399 157 16 4 687 351 0 0 0 chr4 13380015 13380054 -142250066 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 687 198 0 0 0 chr4 13380719 13380741 -142249379 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 687 1620 230 175 16 chr4 13381384 13381888 -142248232 + Lx6 LINE L1 6698 7281 -179 4 687 315 0 0 0 chr4 13381959 13381994 -142248126 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 687 443 63 0 16 chr4 13383468 13383532 -142246588 + (CTA)n Simple_repeat Simple_repeat 3 65 0 4 687 21 0 0 0 chr4 13383762 13383783 -142246337 + AT_rich Low_complexity Low_complexity 1 21 0 4 687 23 0 0 0 chr4 13383821 13383844 -142246276 + AT_rich Low_complexity Low_complexity 1 23 0 5 687 258 349 30 12 chr4 13385240 13385385 -142244735 - MIRb SINE MIR -118 150 1 5 687 261 0 0 0 chr4 13390852 13390881 -142239239 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 687 397 350 61 6 chr4 13391422 13391586 -142238534 - MIR SINE MIR -65 197 25 5 687 180 97 0 0 chr4 13393109 13393140 -142236980 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 5 687 204 220 140 0 chr4 13393243 13393293 -142236827 - MIRm SINE MIR 0 276 220 5 687 449 320 106 88 chr4 13393396 13393680 -142236440 + B4A SINE B4 2 290 -2 5 687 1110 181 23 0 chr4 13393835 13394050 -142236070 + URR1A DNA MER1_type 3 222 -4 5 687 302 315 24 112 chr4 13395664 13395789 -142234331 + RSINE1 SINE B4 2 115 -50 5 687 188 122 0 24 chr4 13395847 13395889 -142234231 + (TAAG)n Simple_repeat Simple_repeat 4 44 0 5 687 206 32 32 0 chr4 13396113 13396144 -142233976 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 687 21 36 0 0 chr4 13397755 13397783 -142232337 + AT_rich Low_complexity Low_complexity 1 28 0 5 687 335 347 159 40 chr4 13398181 13398727 -142231393 + L3 LINE CR1 3752 4362 -127 5 687 212 147 0 0 chr4 13398940 13398974 -142231146 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 687 25 0 0 0 chr4 13399739 13399764 -142230356 + AT_rich Low_complexity Low_complexity 1 25 0 5 687 245 389 47 56 chr4 13399815 13400030 -142230090 - MIR SINE MIR -12 250 38 5 687 234 0 0 0 chr4 13400282 13400308 -142229812 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 687 1503 218 83 79 chr4 13400308 13400668 -142229452 + Lx7 LINE L1 7201 7545 -151 5 687 1696 21 0 0 chr4 13400668 13400859 -142229261 - B2_Mm1a SINE B2 -1 192 2 5 687 1503 218 83 79 chr4 13400859 13400992 -142229128 + Lx7 LINE L1 7546 7695 -1 5 687 698 235 128 9 chr4 13401551 13401770 -142228350 + MER121 Unknown Unknown 5 249 -163 5 687 270 269 63 13 chr4 13402573 13402652 -142227468 + MER5B DNA MER1_type 94 176 -2 5 687 261 0 0 0 chr4 13402749 13402778 -142227342 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 687 1215 264 29 58 chr4 13404626 13405004 -142225116 - MTE2a LTR MaLR 0 379 13 5 687 189 0 0 0 chr4 13405645 13405666 -142224454 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 687 434 102 0 14 chr4 13405818 13405888 -142224232 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 687 435 38 0 0 chr4 13406500 13406553 -142223567 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 687 393 22 0 0 chr4 13406553 13406598 -142223522 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 687 213 327 67 38 chr4 13409125 13409230 -142220890 - L2a LINE L2 -8 3418 3311 5 687 200 350 100 53 chr4 13409304 13409494 -142220626 + MIR3 SINE MIR 3 201 -7 5 687 225 0 0 0 chr4 13409836 13409861 -142220259 + (T)n Simple_repeat Simple_repeat 1 25 0 5 687 302 305 56 19 chr4 13410845 13410952 -142219168 - PB1D7 SINE Alu 0 120 10 5 687 358 330 167 5 chr4 13411506 13411692 -142218428 - MLT1G LTR MaLR -375 216 1 5 687 206 224 40 107 chr4 13412061 13412136 -142217984 - MER5A DNA MER1_type 0 189 120 5 687 204 143 0 0 chr4 13412194 13412220 -142217900 + (A)n Simple_repeat Simple_repeat 1 26 0 5 687 207 0 0 0 chr4 13412220 13412243 -142217877 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 687 204 143 0 0 chr4 13412243 13412265 -142217855 + (A)n Simple_repeat Simple_repeat 1 22 0 5 687 180 0 0 0 chr4 13414419 13414439 -142215681 + (A)n Simple_repeat Simple_repeat 1 20 0 5 687 2346 45 14 0 chr4 13415110 13415396 -142214724 + L1Md_F2 LINE L1 5604 5893 -689 5 687 1344 75 3 0 chr4 13415433 13415622 -142214498 - L1Md_F2 LINE L1 -331 5969 5746 5 687 5715 32 6 0 chr4 13415622 13416345 -142213775 + L1Md_F2 LINE L1 5901 6582 0 5 687 184 300 111 0 chr4 13416799 13416889 -142213231 - MIRb SINE MIR -103 165 66 5 687 180 0 0 0 chr4 13417016 13417036 -142213084 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 687 609 279 167 4 chr4 13417084 13417318 -142212802 - B4A SINE B4 -18 274 3 5 687 258 81 0 0 chr4 13417321 13417358 -142212762 + (TTATA)n Simple_repeat Simple_repeat 2 38 0 5 687 648 26 0 0 chr4 13417437 13417515 -142212605 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 5 687 245 280 85 45 chr4 13417535 13417759 -142212361 - RMER17C LTR ERVK -169 241 9 5 687 363 23 0 0 chr4 13417812 13417856 -142212264 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 687 329 396 28 0 chr4 13418618 13418800 -142211320 - MER20 DNA MER1_type -17 202 16 5 687 31 26 0 0 chr4 13419773 13419811 -142210309 + AT_rich Low_complexity Low_complexity 1 38 0 5 687 200 341 164 36 chr4 13422199 13422339 -142207781 + MIRb SINE MIR 81 238 -30 5 687 392 265 41 135 chr4 13422812 13422973 -142207147 + RSINE1 SINE B4 2 147 -18 5 687 393 22 0 0 chr4 13422973 13423019 -142207101 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 687 618 311 100 8 chr4 13424375 13424634 -142205486 + B4 SINE B4 1 283 -9 5 687 1061 274 112 38 chr4 13425240 13425740 -142204380 - L1MA9 LINE L1 -63 6249 5713 5 687 198 392 14 0 chr4 13426478 13426552 -142203568 - L2 LINE L2 -556 2863 2789 5 687 711 249 9 95 chr4 13426760 13426982 -142203138 + B3 SINE B2 5 207 -9 5 687 258 32 0 0 chr4 13428581 13428612 -142201508 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 687 237 367 85 37 chr4 13430051 13430215 -142199905 + MLT1H LTR MaLR 3 174 -375 5 687 23 0 0 0 chr4 13430903 13430926 -142199194 + AT_rich Low_complexity Low_complexity 1 23 0 5 687 730 264 5 41 chr4 13432973 13433170 -142196950 + MER3 DNA MER1_type 20 209 0 5 687 679 165 60 45 chr4 13433312 13433445 -142196675 - B1_Mur4 SINE Alu 0 150 16 5 687 222 37 0 0 chr4 13433928 13433955 -142196165 + (GCTTG)n Simple_repeat Simple_repeat 2 28 0 5 687 39 0 0 0 chr4 13434710 13434749 -142195371 + AT_rich Low_complexity Low_complexity 1 39 0 5 687 2611 140 29 18 chr4 13434751 13435202 -142194918 - Lx3B LINE L1 -4 6969 6514 5 687 11595 129 18 11 chr4 13437343 13438469 -142191651 - Lx2 LINE L1 -923 6074 4923 5 687 1099 62 7 40 chr4 13438469 13438621 -142191499 + B1_Mm SINE Alu 1 147 0 5 687 207 0 0 0 chr4 13438623 13438646 -142191474 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 687 11595 143 23 14 chr4 13438646 13439721 -142190399 - Lx2 LINE L1 -961 4922 3848 5 687 642 26 0 0 chr4 13440725 13440801 -142189319 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 5 687 333 0 0 0 chr4 13441875 13441912 -142188208 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 5 687 23 33 0 0 chr4 13442176 13442206 -142187914 + AT_rich Low_complexity Low_complexity 1 30 0 5 687 492 18 0 0 chr4 13443214 13443271 -142186849 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 5 687 865 245 68 68 chr4 13444163 13444534 -142185586 + MT2B LTR ERVL 3 546 -55 5 687 252 0 0 0 chr4 13444540 13444568 -142185552 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5 687 315 104 0 0 chr4 13446273 13446321 -142183799 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 687 603 0 0 0 chr4 13446916 13446983 -142183137 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 687 2064 173 33 49 chr4 13447554 13447980 -142182140 - MTC LTR MaLR 0 421 3 5 687 1075 255 82 72 chr4 13449171 13449702 -142180418 - MT2B LTR ERVL 0 601 1 5 687 301 372 87 46 chr4 13449829 13450149 -142179971 + Lx8 LINE L1 6994 7336 -137 5 687 216 67 0 0 chr4 13450149 13450179 -142179941 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 687 301 372 87 46 chr4 13450179 13450317 -142179803 + Lx8 LINE L1 7337 7471 -2 5 687 699 297 85 18 chr4 13450548 13450829 -142179291 - MER58B DNA MER1_type -23 318 19 5 687 189 74 0 0 chr4 13451768 13451795 -142178325 + (TGAG)n Simple_repeat Simple_repeat 4 30 0 5 687 186 43 0 0 chr4 13453808 13453831 -142176289 + (ATG)n Simple_repeat Simple_repeat 2 24 0 5 687 246 188 0 55 chr4 13454107 13454180 -142175940 + A-rich Low_complexity Low_complexity 2 70 0 5 687 11198 81 52 6 chr4 13454466 13456151 -142173969 - MusHAL1 LINE L1 0 2712 951 5 687 228 227 0 0 chr4 13456599 13456643 -142173477 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 687 21 0 0 0 chr4 13456740 13456761 -142173359 + AT_rich Low_complexity Low_complexity 1 21 0 5 687 1203 253 50 70 chr4 13456873 13457256 -142172864 + Lx6 LINE L1 7075 7449 -11 5 687 270 0 0 0 chr4 13457412 13457442 -142172678 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 5 687 452 306 7 20 chr4 13457745 13457895 -142172225 + B1_Mur2 SINE Alu 2 149 0 5 687 603 40 0 0 chr4 13458359 13458433 -142171687 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 5 687 1549 193 99 6 chr4 13458511 13458652 -142171468 - RLTR14 LTR ERV1 -2 380 238 5 687 468 77 0 0 chr4 13458652 13458717 -142171403 + (CATA)n Simple_repeat Simple_repeat 3 67 0 5 687 1549 193 99 6 chr4 13458717 13458828 -142171292 - RLTR14 LTR ERV1 -145 237 98 5 687 360 18 35 17 chr4 13458828 13458886 -142171234 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 687 1549 193 99 6 chr4 13458886 13458976 -142171144 - RLTR14 LTR ERV1 -285 97 8 5 687 719 293 24 14 chr4 13459443 13459651 -142170469 + B3 SINE B2 2 211 -5 5 687 246 286 0 105 chr4 13459682 13459768 -142170352 + ID SINE ID 7 83 -141 5 687 237 316 11 102 chr4 13459823 13459847 -142170273 + ID_B1 SINE B4 104 122 -102 5 687 942 156 177 0 chr4 13459847 13460039 -142170081 - URR1A DNA MER1_type 0 226 1 5 687 237 316 11 102 chr4 13460039 13460102 -142170018 + ID_B1 SINE B4 123 183 -41 5 687 301 129 29 0 chr4 13460122 13460192 -142169928 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 687 25 0 0 0 chr4 13460378 13460403 -142169717 + AT_rich Low_complexity Low_complexity 1 25 0 5 687 21 0 0 0 chr4 13460934 13460955 -142169165 + AT_rich Low_complexity Low_complexity 1 21 0 5 687 2937 90 13 25 chr4 13460962 13461439 -142168681 + MusHAL1 LINE L1 551 1021 -1691 5 687 288 261 100 22 chr4 13461439 13461529 -142168591 - Lx9 LINE L1 -397 7247 7151 6 687 3561 60 0 47 chr4 13461840 13462332 -142167788 - L1Md_F2 LINE L1 0 6582 6114 6 687 369 278 9 0 chr4 13462333 13462448 -142167672 - Lx6 LINE L1 -9 7451 7336 6 687 366 237 0 10 chr4 13462461 13462559 -142167561 + Lx6 LINE L1 7185 7281 -179 6 687 662 301 42 17 chr4 13462828 13463068 -142167052 + RMER15 LTR ERVL 316 561 -14 6 687 473 323 56 10 chr4 13464924 13465121 -142164999 + ID_B1 SINE B4 4 209 -15 6 687 306 0 0 0 chr4 13465125 13465159 -142164961 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 687 922 313 76 14 chr4 13465422 13465778 -142164342 - MTEb LTR MaLR -1 378 1 6 687 382 266 137 59 chr4 13467842 13468046 -142162074 + ID_B1 SINE B4 2 221 -3 6 687 282 324 36 14 chr4 13469017 13469155 -142160965 + B1F1 SINE Alu 1 141 -8 6 687 1509 176 55 7 chr4 13469200 13469509 -142160611 - Lx4A LINE L1 -4 7054 6731 6 687 23 0 0 0 chr4 13469686 13469709 -142160411 + AT_rich Low_complexity Low_complexity 1 23 0 6 687 256 296 227 25 chr4 13470656 13470819 -142159301 - MIRb SINE MIR -6 256 61 6 687 785 314 7 62 chr4 13471214 13471506 -142158614 - B4 SINE B4 -12 280 5 6 687 236 281 90 20 chr4 13471635 13471747 -142158373 - MIR SINE MIR -104 158 47 6 687 666 0 0 0 chr4 13471972 13472046 -142158074 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 687 1951 270 23 14 chr4 13472550 13473415 -142156705 + Lx6 LINE L1 6268 7434 -26 6 687 481 327 44 89 chr4 13473724 13474153 -142155967 + MT2A LTR ERVL 45 454 -79 6 687 387 0 0 0 chr4 13474169 13474212 -142155908 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 687 21 0 0 0 chr4 13474330 13474351 -142155769 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 213 356 53 58 chr4 13475240 13475428 -142154692 + B2_Mm2 SINE B2 5 191 -4 6 687 234 128 0 0 chr4 13475840 13475879 -142154241 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 6 687 265 373 47 8 chr4 13476023 13476150 -142153970 - L2c LINE L2 -5 3382 3251 6 687 189 0 0 0 chr4 13476372 13476393 -142153727 + (A)n Simple_repeat Simple_repeat 1 21 0 6 687 378 0 0 0 chr4 13477891 13477933 -142152187 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 687 24 32 0 0 chr4 13478533 13478564 -142151556 + AT_rich Low_complexity Low_complexity 1 31 0 6 687 1222 314 33 14 chr4 13478851 13479213 -142150907 + MTEa LTR MaLR 3 371 -8 6 687 703 289 50 54 chr4 13479220 13479461 -142150659 + MTEa-int LTR MaLR 4 243 -1337 6 687 1191 285 52 30 chr4 13479462 13479831 -142150289 + MTD LTR MaLR 29 405 -14 6 687 1930 286 109 72 chr4 13479844 13480855 -142149265 + MTD-int LTR MaLR 1 1190 -180 6 687 23349 162 41 13 chr4 13480881 13486236 -142143884 - L1VL4 LINE L1 0 5886 379 6 687 1192 177 77 0 chr4 13486238 13486486 -142143634 - L1_Mur2 LINE L1 -616 5261 4995 6 687 5486 223 81 8 chr4 13486485 13487731 -142142389 + Lx5 LINE L1 5707 7043 -7 6 687 22 0 0 0 chr4 13487733 13487755 -142142365 + AT_rich Low_complexity Low_complexity 1 22 0 6 687 307 405 23 0 chr4 13487770 13487901 -142142219 + MTD-int LTR MaLR 1445 1578 -2 6 687 947 287 75 14 chr4 13487903 13488196 -142141924 + MTD LTR MaLR 1 311 -68 6 687 495 304 136 30 chr4 13488341 13488738 -142141382 + L1M3 LINE L1 3760 4198 -1942 6 687 234 307 22 33 chr4 13488879 13488970 -142141150 - MTEa LTR MaLR -9 370 281 6 687 1254 169 190 3 chr4 13489040 13489331 -142140789 - ORR1A4 LTR MaLR -8 318 6 6 687 700 335 100 9 chr4 13489497 13489816 -142140304 + MER21B LTR ERV1 377 724 -139 6 687 198 264 170 32 chr4 13490211 13490305 -142139815 - L2a LINE L2 -65 3361 3255 6 687 1026 188 12 51 chr4 13491455 13491935 -142138185 - RMER17C LTR ERVK -8 402 1 6 687 253 97 13 53 chr4 13492080 13492156 -142137964 + T-rich Low_complexity Low_complexity 2 74 0 6 687 241 223 117 39 chr4 13492457 13492577 -142137543 - MIRc SINE MIR -109 167 22 6 687 305 268 70 39 chr4 13493773 13493901 -142136219 - L1MA8 LINE L1 -24 6267 6136 6 687 300 257 81 0 chr4 13494054 13494128 -142135992 + ID4 SINE ID 2 81 -2 6 687 24 0 0 0 chr4 13494605 13494629 -142135491 + AT_rich Low_complexity Low_complexity 1 24 0 6 687 281 255 10 50 chr4 13494860 13494959 -142135161 + HAL1 LINE L1 2108 2202 -305 6 687 836 152 7 0 chr4 13495303 13495454 -142134666 + GA-rich Low_complexity Low_complexity 4 155 0 6 687 806 120 0 15 chr4 13495470 13495605 -142134515 + (GAAA)n Simple_repeat Simple_repeat 1 133 0 6 687 195 129 0 0 chr4 13496115 13496146 -142133974 + (CTG)n Simple_repeat Simple_repeat 2 32 0 6 687 207 0 0 0 chr4 13496156 13496179 -142133941 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 687 205 88 0 29 chr4 13496184 13496219 -142133901 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 687 258 32 0 0 chr4 13496306 13496337 -142133783 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 6 687 255 61 0 0 chr4 13497394 13497427 -142132693 + (T)n Simple_repeat Simple_repeat 1 33 0 6 687 258 380 54 0 chr4 13497763 13497855 -142132265 + PB1D10 SINE Alu 13 109 -8 6 687 185 154 0 25 chr4 13497890 13497930 -142132190 + A-rich Low_complexity Low_complexity 1 39 0 6 687 23 54 0 0 chr4 13497944 13497981 -142132139 + AT_rich Low_complexity Low_complexity 1 37 0 6 687 463 180 54 25 chr4 13499095 13499555 -142130565 + (TAGA)n Simple_repeat Simple_repeat 1 473 0 6 687 183 114 0 0 chr4 13499633 13499668 -142130452 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 6 687 1095 62 7 20 chr4 13499673 13499821 -142130299 - B1_Mm SINE Alu -1 146 1 6 687 474 248 19 70 chr4 13499821 13499977 -142130143 + MER82 DNA MER2_type 269 416 -237 6 687 370 383 62 22 chr4 13500008 13500187 -142129933 + MER82 DNA MER2_type 468 653 0 1 688 365 279 49 49 chr4 13500543 13500705 -142129415 - L2a LINE L2 -6 3420 3259 2 688 589 335 85 40 chr4 13500705 13501034 -142129086 - MTEa LTR MaLR -6 353 10 3 688 1094 304 70 9 chr4 13501018 13501209 -142128911 - MTEa-int LTR MaLR -28 1552 1202 3 688 207 0 0 0 chr4 13501209 13501232 -142128888 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 688 2440 324 72 65 chr4 13501232 13502099 -142128021 - MTEa-int LTR MaLR -339 1241 437 3 688 387 0 0 0 chr4 13502099 13502142 -142127978 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 688 2440 319 72 70 chr4 13502142 13502593 -142127527 - MTEa-int LTR MaLR -1144 436 1 3 688 1174 61 0 0 chr4 13502616 13502763 -142127357 - B1_Mus2 SINE Alu 0 147 1 6 688 803 282 41 123 chr4 13502772 13503185 -142126935 - MTEa LTR MaLR 0 379 1 3 688 883 234 129 15 chr4 13503930 13504255 -142125865 + MTEb LTR MaLR 15 376 -3 7 688 261 83 0 0 chr4 13505159 13505195 -142124925 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 8 688 210 37 0 0 chr4 13505390 13505417 -142124703 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 688 874 300 58 0 chr4 13505508 13505768 -142124352 + B4A SINE B4 8 282 -10 1 688 198 91 0 0 chr4 13505822 13505855 -142124265 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 688 184 333 0 0 chr4 13506258 13506318 -142123802 + L2a LINE L2 3358 3417 -9 1 688 460 260 13 82 chr4 13507718 13507732 -142122388 + ID_B1 SINE B4 76 219 -1 1 688 803 180 7 14 chr4 13507732 13507873 -142122247 + B1_Mur4 SINE Alu 6 145 -5 1 688 207 0 0 0 chr4 13507879 13507902 -142122218 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 688 345 282 147 6 chr4 13508909 13509066 -142121054 - B3A SINE B2 -16 182 4 1 688 276 30 0 0 chr4 13509235 13509268 -142120852 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 688 459 92 0 0 chr4 13509268 13509332 -142120788 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 688 446 302 84 29 chr4 13509588 13509898 -142120222 - L1ME4a LINE L1 -202 5922 5596 1 688 21 0 0 0 chr4 13509921 13509942 -142120178 + AT_rich Low_complexity Low_complexity 1 21 0 2 688 350 39 0 38 chr4 13510448 13510501 -142119619 + (TTG)n Simple_repeat Simple_repeat 1 51 0 2 688 188 0 74 0 chr4 13510501 13510528 -142119592 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 688 1123 88 0 0 chr4 13510528 13510675 -142119445 - B1_Mus1 SINE Alu 0 148 2 2 688 642 248 7 0 chr4 13511296 13511437 -142118683 + B1_Mur3 SINE Alu 1 142 -7 2 688 379 95 0 26 chr4 13511438 13511514 -142118606 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 688 291 104 0 0 chr4 13511514 13511562 -142118558 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 688 561 30 0 0 chr4 13512057 13512124 -142117996 + (CCA)n Simple_repeat Simple_repeat 1 67 0 2 688 201 158 0 0 chr4 13512135 13512173 -142117947 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 688 412 298 140 0 chr4 13512274 13512388 -142117732 - RSINE1 SINE B4 -28 137 8 2 688 382 157 50 7 chr4 13512474 13512615 -142117505 + (TA)n Simple_repeat Simple_repeat 1 147 0 3 688 21 0 0 0 chr4 13512898 13512919 -142117201 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 360 43 0 0 chr4 13513178 13513224 -142116896 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 688 284 276 26 0 chr4 13513449 13513525 -142116595 + MIR SINE MIR 64 141 -67 3 688 477 287 8 23 chr4 13515332 13515464 -142114656 - ID_B1 SINE B4 -3 221 92 3 688 356 238 12 0 chr4 13515850 13515930 -142114190 + ID4_ SINE ID 3 83 0 3 688 22 56 0 0 chr4 13515930 13515966 -142114154 + AT_rich Low_complexity Low_complexity 1 36 0 3 688 867 305 7 106 chr4 13516377 13516678 -142113442 - B4 SINE B4 -6 286 16 3 688 3873 96 24 32 chr4 13517049 13517639 -142112481 + L1Md_F2 LINE L1 5997 6581 -1 3 688 650 307 12 47 chr4 13517872 13518043 -142112077 + RSINE1 SINE B4 1 165 0 3 688 201 74 0 0 chr4 13518051 13518078 -142112042 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 688 234 0 0 0 chr4 13518081 13518107 -142112013 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 4 688 839 230 71 5 chr4 13518186 13518383 -142111737 + B3 SINE B2 1 210 -6 4 688 256 347 10 10 chr4 13518460 13518559 -142111561 - MER33 DNA MER1_type -219 105 7 4 688 254 285 75 15 chr4 13519294 13519389 -142110731 + PB1D7 SINE Alu 11 98 -51 4 688 261 0 0 0 chr4 13519961 13519990 -142110130 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 688 1403 299 30 6 chr4 13521906 13522380 -142107740 - Lx5 LINE L1 -82 6968 6484 4 688 195 69 0 0 chr4 13522455 13522484 -142107636 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 688 308 237 156 14 chr4 13523257 13523398 -142106722 - L1M4 LINE L1 -1095 5051 4891 4 688 444 19 0 0 chr4 13523431 13523484 -142106636 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 688 215 125 0 24 chr4 13523701 13523742 -142106378 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 5 688 331 213 0 0 chr4 13523932 13523993 -142106127 - B1_Mur2 SINE Alu -56 93 33 5 688 335 352 40 36 chr4 13524587 13524811 -142105309 + MIRb SINE MIR 38 262 -6 5 688 21 0 0 0 chr4 13524924 13524945 -142105175 + AT_rich Low_complexity Low_complexity 1 21 0 5 688 21 36 0 0 chr4 13525090 13525118 -142105002 + AT_rich Low_complexity Low_complexity 1 28 0 5 688 426 39 0 0 chr4 13525345 13525397 -142104723 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 688 214 50 50 0 chr4 13527849 13527889 -142102231 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 688 360 0 0 0 chr4 13528600 13528640 -142101480 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 688 243 0 0 0 chr4 13528640 13528667 -142101453 + (GAA)n Simple_repeat Simple_repeat 1 27 0 5 688 1061 116 181 21 chr4 13528886 13529079 -142101041 - URR1B DNA MER1_type -1 224 1 5 688 1212 281 180 15 chr4 13529469 13530124 -142099996 - Lx8 LINE L1 -307 7166 6404 6 688 192 322 0 0 chr4 13530323 13530382 -142099738 - L2a LINE L2 -1 3425 3367 6 688 4116 40 8 0 chr4 13530629 13531126 -142098994 + L1Md_F2 LINE L1 6082 6582 0 6 688 2118 169 21 12 chr4 13531133 13531557 -142098563 + Lx5 LINE L1 5645 6072 -978 6 688 526 228 60 7 chr4 13531559 13531709 -142098411 + Lx4B LINE L1 6894 7051 -7 6 688 214 277 0 0 chr4 13531948 13531995 -142098125 + ID SINE ID 24 70 -154 6 688 195 42 0 0 chr4 13534014 13534038 -142096082 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 688 1821 131 88 14 chr4 13535504 13535799 -142094321 - ORR1A3 LTR MaLR -8 318 2 6 688 270 160 0 0 chr4 13536826 13536876 -142093244 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 688 281 26 26 0 chr4 13537380 13537418 -142092702 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 6 688 2451 92 3 0 chr4 13537556 13537882 -142092238 + ORR1A2 LTR MaLR 1 327 0 7 688 256 327 18 0 chr4 13537883 13537993 -142092127 - L1MC4 LINE L1 -523 7438 7327 7 688 328 342 67 55 chr4 13538050 13538304 -142091816 - L1MC4 LINE L1 -1124 6918 6614 7 688 256 351 96 0 chr4 13538315 13538409 -142091711 - PB1D10 SINE Alu -14 103 1 7 688 339 85 0 0 chr4 13538439 13538486 -142091634 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 688 2771 293 58 26 chr4 13538788 13539243 -142090877 - Lx8 LINE L1 -16 7457 6991 7 688 279 0 0 0 chr4 13539243 13539274 -142090846 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7 688 2771 293 58 26 chr4 13539274 13540036 -142090084 - Lx8 LINE L1 -483 6990 6201 7 688 356 295 133 54 chr4 13540161 13540606 -142089514 - L1MC4 LINE L1 -2059 5823 5344 7 688 446 374 59 49 chr4 13540920 13541429 -142088691 - L1M5 LINE L1 -1214 4932 4419 7 688 211 267 0 48 chr4 13541452 13541515 -142088605 + GA-rich Low_complexity Low_complexity 6 65 0 7 688 342 0 0 0 chr4 13541853 13541891 -142088229 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 688 240 200 45 91 chr4 13542102 13542168 -142087952 - tRNA-Tyr-TAT tRNA tRNA -12 64 2 7 688 2724 175 87 4 chr4 13542575 13543104 -142087016 + RMER15 LTR ERVL 1 573 -2 8 688 389 277 19 19 chr4 13543262 13543365 -142086755 - B1_Mur1 SINE Alu -6 143 41 8 688 22 70 0 0 chr4 13543601 13543644 -142086476 + AT_rich Low_complexity Low_complexity 1 43 0 8 688 23 54 0 0 chr4 13543996 13544033 -142086087 + AT_rich Low_complexity Low_complexity 1 37 0 8 688 207 0 0 0 chr4 13544149 13544172 -142085948 + (A)n Simple_repeat Simple_repeat 1 23 0 8 688 398 380 21 42 chr4 13544857 13545049 -142085071 + Tigger7 DNA MER2_type 5 192 -2299 8 688 293 224 66 0 chr4 13545094 13545170 -142084950 + Tigger7 DNA MER2_type 323 403 -2088 8 688 558 273 16 0 chr4 13545324 13545452 -142084668 - B1_Mur4 SINE Alu -4 146 17 8 688 270 309 11 56 chr4 13545539 13545628 -142084492 + Tigger7 DNA MER2_type 2381 2465 -26 8 688 342 343 62 48 chr4 13545983 13546320 -142083800 + Charlie7 DNA MER1_type 319 660 -1952 8 688 21 57 0 0 chr4 13546479 13546514 -142083606 + AT_rich Low_complexity Low_complexity 1 35 0 8 688 797 341 32 0 chr4 13546581 13546827 -142083293 + B4A SINE B4 1 254 -38 8 688 207 274 151 50 chr4 13546911 13547030 -142083090 - MIRb SINE MIR -69 199 69 9 688 494 259 83 15 chr4 13547343 13547476 -142082644 + ID_B1 SINE B4 79 220 -4 9 688 565 289 40 20 chr4 13547511 13547663 -142082457 + B3A SINE B2 1 155 -43 9 688 384 22 0 0 chr4 13547691 13547736 -142082384 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 688 316 315 35 44 chr4 13548665 13548778 -142081342 - MLT1A0 LTR MaLR -246 119 8 9 688 1282 184 9 0 chr4 13548778 13549001 -142081119 + URR1A DNA MER1_type 1 225 -1 9 688 3884 168 96 30 chr4 13549696 13549780 -142080340 + RLTR25A LTR ERVK 21 111 -992 9 688 417 39 0 0 chr4 13549780 13549831 -142080289 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 688 315 0 0 0 chr4 13549833 13549868 -142080252 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 688 3884 168 96 30 chr4 13549868 13550602 -142079518 + RLTR25A LTR ERVK 112 892 -211 9 688 2571 176 36 62 chr4 13550602 13551178 -142078942 - RLTR31_Mm LTR ERVK 0 561 1 9 688 3884 269 84 84 chr4 13551178 13551294 -142078826 + RLTR25A LTR ERVK 893 1103 0 9 688 222 259 0 0 chr4 13551415 13551469 -142078651 - MIRc SINE MIR -17 251 198 1 688 909 224 97 0 chr4 13552046 13552242 -142077878 + B3 SINE B2 1 215 -1 1 688 581 307 67 15 chr4 13552750 13552945 -142077175 + B4A SINE B4 7 211 -81 1 688 547 298 4 8 chr4 13552966 13553189 -142076931 + Lx7 LINE L1 6975 7207 -266 1 688 262 250 33 0 chr4 13553681 13553741 -142076379 + PB1D10 SINE Alu 35 96 -21 1 688 334 231 0 0 chr4 13554200 13554265 -142075855 + PB1D10 SINE Alu 45 109 -8 1 688 691 310 0 0 chr4 13554521 13554666 -142075454 + RSINE1 SINE B4 13 157 -8 1 688 582 105 0 0 chr4 13554671 13554776 -142075344 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 688 2266 198 106 42 chr4 13555042 13555815 -142074305 - RLTR13D3 LTR ERVK 0 1114 1 1 688 1815 154 3 66 chr4 13555831 13556179 -142073941 + ORR1A4 LTR MaLR 2 327 -2 1 688 1964 212 27 12 chr4 13558217 13558619 -142071501 + MTC LTR MaLR 4 411 -10 1 688 378 43 0 79 chr4 13560508 13560584 -142069536 + (TCTCTG)n Simple_repeat Simple_repeat 3 72 0 1 688 450 0 0 0 chr4 13560584 13560633 -142069487 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 688 1195 135 70 0 chr4 13560648 13560833 -142069287 + B3 SINE B2 2 199 -17 1 688 3518 55 2 2 chr4 13561728 13562168 -142067952 + L1_Mus1 LINE L1 6128 6567 0 1 688 210 119 0 45 chr4 13562366 13562410 -142067710 + T-rich Low_complexity Low_complexity 3 44 0 1 688 28 0 0 0 chr4 13563268 13563296 -142066824 + AT_rich Low_complexity Low_complexity 1 28 0 1 688 318 26 0 0 chr4 13563537 13563576 -142066544 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 688 2503 47 3 48 chr4 13564030 13564367 -142065753 - RLTRETN_Mm LTR ERVK 0 322 1 1 688 259 91 0 52 chr4 13564374 13564432 -142065688 + (TTTC)n Simple_repeat Simple_repeat 4 58 0 1 688 1091 255 99 20 chr4 13564473 13564866 -142065254 - Lx6 LINE L1 -26 7434 7011 1 688 180 0 0 0 chr4 13566094 13566114 -142064006 + (CACTC)n Simple_repeat Simple_repeat 1 20 0 1 688 362 325 31 8 chr4 13567520 13567647 -142062473 + MER5A DNA MER1_type 4 133 -56 1 688 237 329 71 60 chr4 13567878 13567962 -142062158 + B1F2 SINE Alu 4 88 -61 1 688 570 265 69 42 chr4 13568627 13568660 -142061460 - B3A SINE B2 -1 197 164 1 688 432 0 0 0 chr4 13568660 13568708 -142061412 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 688 332 104 15 0 chr4 13568708 13568774 -142061346 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 688 570 265 69 42 chr4 13568774 13568928 -142061192 - B3A SINE B2 -35 163 5 1 688 5784 188 45 25 chr4 13569104 13570335 -142059785 - Lx5 LINE L1 -17 7033 5779 1 688 478 195 11 0 chr4 13570336 13570423 -142059697 - ORR1D1 LTR MaLR -286 88 1 1 688 388 326 76 80 chr4 13570598 13570900 -142059220 + MLT1H1 LTR MaLR 22 290 -301 1 688 942 302 55 21 chr4 13571079 13571453 -142058667 - MTE2b LTR MaLR -2 377 1 1 688 411 290 0 0 chr4 13571453 13571521 -142058599 - MTE2b LTR MaLR -307 72 5 1 688 918 161 23 29 chr4 13571633 13571806 -142058314 + B2_Mm2 SINE B2 1 172 -23 1 688 234 261 11 64 chr4 13571876 13571970 -142058150 - L1M5 LINE L1 -570 5624 5536 1 688 1110 260 124 7 chr4 13572040 13572498 -142057622 + Lx9 LINE L1 6462 6973 -671 1 688 1282 196 74 45 chr4 13572498 13572808 -142057312 - ORR1B2 LTR MaLR -48 319 1 1 688 458 220 100 17 chr4 13572871 13572991 -142057129 - MT2A LTR ERVL -403 130 1 1 688 505 200 100 0 chr4 13572991 13573121 -142056999 - MERVL_2A-int LTR ERVL 0 5761 5619 1 688 420 182 109 0 chr4 13573119 13573229 -142056891 - MERVL_2A-int LTR ERVL -71 5690 5569 1 688 407 136 0 0 chr4 13573225 13573291 -142056829 - MERVL_2A-int LTR ERVL -2619 3142 3077 1 688 6502 118 13 33 chr4 13573305 13574369 -142055751 + Lx LINE L1 5587 6629 -25 1 688 396 0 0 0 chr4 13574372 13574416 -142055704 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 688 356 215 0 0 chr4 13574524 13574589 -142055531 - B1F SINE Alu -11 138 74 1 688 435 277 9 26 chr4 13574567 13574682 -142055438 - B1F SINE Alu -25 124 12 1 688 454 328 8 0 chr4 13574869 13575000 -142055120 + ID_B1 SINE B4 82 213 -11 1 688 458 320 138 60 chr4 13576653 13577249 -142052871 + L1MC LINE L1 3202 3843 -2303 1 688 270 332 69 14 chr4 13577545 13577762 -142052358 + L1M5 LINE L1 5381 5609 -555 1 688 217 136 33 33 chr4 13577978 13578069 -142052051 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 1 688 376 302 0 50 chr4 13578122 13578223 -142051897 + B1F SINE Alu 11 106 -43 1 688 3878 48 2 34 chr4 13578584 13579109 -142051011 + L1Md_F2 LINE L1 6087 6582 0 1 688 27 29 0 0 chr4 13579176 13579210 -142050910 + AT_rich Low_complexity Low_complexity 1 34 0 1 688 536 288 67 92 chr4 13579702 13579897 -142050223 + B3A SINE B2 1 190 -3 1 688 22 70 0 0 chr4 13579902 13579945 -142050175 + AT_rich Low_complexity Low_complexity 1 43 0 1 688 473 277 54 43 chr4 13579971 13580156 -142049964 - B3A SINE B2 -10 188 2 1 688 358 263 5 83 chr4 13580278 13580494 -142049626 - L1MC LINE L1 -755 5391 5193 1 688 667 108 8 8 chr4 13580756 13580877 -142049243 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 1 688 308 349 9 19 chr4 13580931 13581053 -142049067 - L2a LINE L2 -15 3411 3240 1 688 424 332 63 68 chr4 13581169 13581421 -142048699 + B4A SINE B4 1 251 -41 1 688 189 74 0 0 chr4 13581514 13581541 -142048579 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1 688 792 113 21 14 chr4 13582676 13582820 -142047300 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 1 688 438 345 80 46 chr4 13583097 13583446 -142046674 - MLT1C LTR MaLR -106 361 1 1 688 452 184 0 10 chr4 13584024 13584123 -142045997 + CT-rich Low_complexity Low_complexity 3 100 0 1 688 202 62 62 0 chr4 13584209 13584241 -142045879 + (TAAAAA)n Simple_repeat Simple_repeat 1 34 0 1 688 276 100 0 0 chr4 13584423 13584463 -142045657 + (TATG)n Simple_repeat Simple_repeat 1 40 0 1 688 626 233 31 8 chr4 13584594 13584724 -142045396 - B1_Mus1 SINE Alu -9 139 7 1 688 4451 144 10 23 chr4 13584760 13585556 -142044564 - RMER17D2 LTR ERVK 0 809 24 1 688 235 0 57 0 chr4 13585782 13585817 -142044303 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1 688 293 313 46 11 chr4 13585820 13586025 -142044095 + L1M5 LINE L1 5468 5691 -668 1 688 483 282 36 0 chr4 13586034 13586144 -142043976 + RSINE1 SINE B4 33 146 -19 1 688 252 0 0 0 chr4 13586145 13586173 -142043947 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 688 236 125 62 0 chr4 13586174 13586222 -142043898 + GA-rich Low_complexity Low_complexity 4 54 0 1 688 258 163 0 0 chr4 13586225 13586268 -142043852 - RMER17D2 LTR ERVK -624 185 143 1 688 22 0 0 0 chr4 13586995 13587017 -142043103 + AT_rich Low_complexity Low_complexity 1 22 0 1 688 6971 115 15 35 chr4 13587194 13587305 -142042815 - Lx3A LINE L1 -2 6979 6879 1 688 324 0 0 0 chr4 13587305 13587341 -142042779 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 688 6971 115 15 35 chr4 13587341 13588354 -142041766 - Lx3A LINE L1 -103 6878 5879 1 688 3269 50 2 2 chr4 13588354 13588752 -142041368 - MTB LTR MaLR 0 400 3 1 688 1576 46 0 0 chr4 13588752 13588947 -142041173 + L1Md_F2 LINE L1 6376 6570 -12 1 688 8289 87 27 55 chr4 13588960 13590368 -142039752 - L1_Mur1 LINE L1 -1 5885 4518 1 688 298 312 0 13 chr4 13590471 13590549 -142039571 - ID4_ SINE ID -1 82 6 1 688 288 325 31 47 chr4 13590552 13590681 -142039439 - PB1 SINE Alu 0 127 1 1 688 498 341 22 0 chr4 13591179 13591314 -142038806 + B1F SINE Alu 1 138 -11 1 688 240 111 0 0 chr4 13591319 13591355 -142038765 + (CAT)n Simple_repeat Simple_repeat 2 37 0 1 688 1206 89 0 0 chr4 13591368 13591807 -142038313 + (TCC)n Simple_repeat Simple_repeat 1 439 0 1 688 318 106 0 0 chr4 13591816 13591863 -142038257 + (CCA)n Simple_repeat Simple_repeat 1 47 0 1 688 272 222 78 0 chr4 13591977 13592067 -142038053 + Lx4B LINE L1 6962 7058 0 1 688 3232 48 8 0 chr4 13592679 13593072 -142037048 + MTA_Mm LTR MaLR 1 396 0 1 688 1187 308 52 4 chr4 13593088 13593551 -142036569 + Lx8 LINE L1 6263 6747 -726 1 688 2612 191 11 21 chr4 13593551 13594071 -142036049 - RMER6D LTR ERVK 0 720 206 1 688 417 266 54 87 chr4 13594080 13594185 -142035935 + L1VL1 LINE L1 225 315 -6107 1 688 189 0 0 0 chr4 13594185 13594206 -142035914 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 688 417 266 54 87 chr4 13594206 13594285 -142035835 + L1VL1 LINE L1 316 403 -6019 1 688 472 258 26 6 chr4 13594386 13594542 -142035578 + L1Md_F LINE L1 578 736 -5783 1 688 1896 196 10 5 chr4 13594521 13594922 -142035198 + L1Md_F LINE L1 628 1030 -5489 1 688 3504 191 11 14 chr4 13594925 13595709 -142034411 + L1Md_A LINE L1 446 1204 -5520 1 688 3187 30 46 0 chr4 13595709 13596102 -142034018 - IAPLTR2a LTR ERVK 0 411 1 1 688 16123 81 4 41 chr4 13596102 13598713 -142031407 + L1Md_A LINE L1 1187 3696 -2187 1 688 12291 112 17 14 chr4 13598711 13600748 -142029372 + L1_Mm LINE L1 2903 4946 -937 1 688 7022 74 9 3 chr4 13600742 13602360 -142027760 - L1Md_F2 LINE L1 -12 6570 4943 1 688 1650 135 12 78 chr4 13602360 13602705 -142027415 - RLTRETN_Mm LTR ERVK 0 322 1 1 688 2473 137 135 42 chr4 13602705 13603253 -142026867 - MMETn-int LTR ERVK 0 4844 4246 1 688 26879 106 13 20 chr4 13603253 13608170 -142021950 - L1Md_F LINE L1 -767 5116 238 1 688 6999 87 10 4 chr4 13608163 13609829 -142020291 + L1_Mus2 LINE L1 4883 6562 -4 1 688 1152 134 0 0 chr4 13609860 13610031 -142020089 - RMER6D LTR ERVK -549 171 1 1 688 892 290 87 28 chr4 13610118 13610660 -142019460 + Lx8 LINE L1 6869 7442 -31 1 688 665 258 126 0 chr4 13610730 13610912 -142019208 - B3 SINE B2 -7 209 5 1 688 300 355 79 5 chr4 13611003 13611218 -142018902 + Lx8 LINE L1 7025 7255 -218 1 688 504 214 0 0 chr4 13611306 13611418 -142018702 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 688 27 29 0 0 chr4 13611486 13611520 -142018600 + AT_rich Low_complexity Low_complexity 1 34 0 2 688 453 292 98 24 chr4 13611593 13611716 -142018404 + RSINE1 SINE B4 4 135 -30 2 688 24 0 0 0 chr4 13611740 13611764 -142018356 + AT_rich Low_complexity Low_complexity 1 24 0 2 688 10796 120 47 35 chr4 13612334 13613573 -142016547 + Lx3_Mus LINE L1 3094 4314 -2695 2 688 527 252 41 82 chr4 13613573 13613720 -142016400 + B4 SINE B4 81 221 -71 2 688 1083 52 0 0 chr4 13613590 13613725 -142016395 + B1_Mus1 SINE Alu 14 148 0 2 688 10796 120 47 35 chr4 13613725 13616454 -142013666 + Lx3_Mus LINE L1 4315 7005 -4 2 688 1195 88 0 0 chr4 13616635 13616783 -142013337 + B1_Mus1 SINE Alu 1 148 0 2 688 198 103 0 0 chr4 13616783 13616812 -142013308 + (A)n Simple_repeat Simple_repeat 1 29 0 2 688 413 335 37 37 chr4 13618526 13618690 -142011430 + B4A SINE B4 3 166 -126 2 688 363 96 0 0 chr4 13619326 13619378 -142010742 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 688 243 0 0 0 chr4 13619380 13619407 -142010713 + (T)n Simple_repeat Simple_repeat 1 27 0 2 688 312 133 0 0 chr4 13619731 13619791 -142010329 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 688 6972 125 22 8 chr4 13622063 13623117 -142007003 + Lx LINE L1 5587 6654 0 2 688 598 299 71 33 chr4 13623172 13623355 -142006765 - B3A SINE B2 -4 194 5 2 688 1011 129 7 33 chr4 13624240 13624377 -142005743 + B1_Mus1 SINE Alu 1 137 -11 2 688 482 43 14 0 chr4 13624377 13624446 -142005674 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 2 688 1011 129 7 33 chr4 13624446 13624460 -142005660 + B1_Mus1 SINE Alu 138 148 0 2 688 426 20 0 0 chr4 13624649 13624700 -142005420 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 688 849 266 85 24 chr4 13625144 13625437 -142004683 + RMER15 LTR ERVL 263 573 -2 2 688 549 239 68 0 chr4 13625521 13625638 -142004482 + B1_Mur1 SINE Alu 1 125 -24 2 688 239 54 27 0 chr4 13625732 13625769 -142004351 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 688 500 295 8 54 chr4 13625770 13625899 -142004221 - RSINE1 SINE B4 -40 125 3 2 688 536 200 209 0 chr4 13626269 13626384 -142003736 - B3A SINE B2 -58 140 2 2 688 867 252 98 14 chr4 13627247 13627642 -142002478 + L1MA6 LINE L1 5075 5504 -685 2 688 753 275 110 144 chr4 13627727 13628580 -142001540 + L1MA6 LINE L1 5476 6299 -1 2 688 385 296 9 18 chr4 13628636 13628746 -142001374 - ID_B1 SINE B4 0 224 116 2 688 233 208 0 0 chr4 13628951 13628999 -142001121 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 688 364 327 38 45 chr4 13629013 13629170 -142000950 - RSINE1 SINE B4 -6 159 4 2 688 348 312 116 7 chr4 13629488 13629643 -142000477 + L3 LINE CR1 4296 4467 -22 2 688 21 0 0 0 chr4 13629769 13629790 -142000330 + AT_rich Low_complexity Low_complexity 1 21 0 2 688 232 259 52 0 chr4 13629919 13629977 -142000143 + B1F SINE Alu 75 135 -14 2 688 302 297 55 0 chr4 13630092 13630183 -141999937 + PB1D10 SINE Alu 3 98 -19 2 688 180 0 0 0 chr4 13630194 13630214 -141999906 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 688 483 320 158 48 chr4 13630349 13630791 -141999329 - L2a LINE L2 -285 3141 2659 2 688 598 326 35 38 chr4 13630819 13631109 -141999011 + B4A SINE B4 1 289 -3 2 688 446 172 10 0 chr4 13631118 13631217 -141998903 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 689 234 0 0 0 chr4 13631650 13631676 -141998444 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 689 339 284 25 75 chr4 13631707 13631867 -141998253 + ORR1E LTR MaLR 1 152 -207 2 689 674 262 152 39 chr4 13632281 13632331 -141997789 - MTC LTR MaLR -14 405 358 2 689 297 0 0 0 chr4 13632331 13632364 -141997756 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 689 351 0 0 0 chr4 13632364 13632402 -141997718 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 689 690 262 152 39 chr4 13632402 13632580 -141997540 - MTC LTR MaLR -62 357 150 2 689 1547 221 8 29 chr4 13632855 13633202 -141996918 + MT2A LTR ERVL 1 478 -123 2 689 7094 39 1 2 chr4 13633202 13634003 -141996117 - L1Md_F2 LINE L1 -1 6581 5782 2 689 571 303 67 142 chr4 13634003 13634115 -141996005 + MT2A LTR ERVL 479 597 -4 2 689 276 344 75 15 chr4 13634139 13634272 -141995848 + L2 LINE L2 2524 2664 -755 2 689 333 0 0 0 chr4 13634283 13634320 -141995800 + (A)n Simple_repeat Simple_repeat 1 37 0 2 689 538 254 130 38 chr4 13634322 13634506 -141995614 - B3 SINE B2 -15 201 1 2 689 280 226 101 108 chr4 13634775 13634904 -141995216 + LTR48 LTR ERV1 34 161 -626 2 689 289 340 43 49 chr4 13635152 13635316 -141994804 + MER34 LTR ERV1 309 471 -71 2 689 624 91 0 0 chr4 13635545 13635633 -141994487 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 2 689 431 188 88 12 chr4 13636366 13636462 -141993658 - URR1B DNA MER1_type -112 113 1 2 689 277 269 39 63 chr4 13636678 13636805 -141993315 + LTR33A_ LTR ERVL 354 477 -54 2 689 407 337 51 17 chr4 13636943 13637118 -141993002 - MER5A DNA MER1_type -5 184 4 2 689 391 314 48 0 chr4 13637444 13637568 -141992552 - ORR1E LTR MaLR -226 133 4 2 689 1099 109 0 0 chr4 13637805 13637942 -141992178 + B1_Mus1 SINE Alu 3 139 -9 2 689 243 0 0 0 chr4 13637944 13637971 -141992149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 689 455 308 15 15 chr4 13638130 13638262 -141991858 + ID_B1 SINE B4 86 217 -7 2 689 668 237 76 0 chr4 13638379 13638510 -141991610 + B1_Mur2 SINE Alu 2 142 -7 2 689 309 283 44 0 chr4 13638941 13639054 -141991066 + B3A SINE B2 17 134 -64 2 689 351 186 0 0 chr4 13639065 13639124 -141990996 + B1_Mur2 SINE Alu 84 142 -7 2 689 23 0 0 0 chr4 13639171 13639194 -141990926 + AT_rich Low_complexity Low_complexity 1 23 0 2 689 994 179 0 0 chr4 13639229 13639374 -141990746 + B1_Mur4 SINE Alu 5 149 -1 2 689 184 0 0 88 chr4 13639374 13639408 -141990712 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 689 351 154 0 0 chr4 13639424 13639489 -141990631 + GA-rich Low_complexity Low_complexity 2 66 0 2 689 261 0 0 0 chr4 13639489 13639518 -141990602 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 2 689 227 389 38 15 chr4 13639528 13639661 -141990459 + L2 LINE L2 2579 2714 -705 2 689 218 140 0 23 chr4 13639692 13639736 -141990384 - PB1D10 SINE Alu -21 96 54 2 689 201 175 0 0 chr4 13639810 13639850 -141990270 + A-rich Low_complexity Low_complexity 2 41 0 2 689 581 331 0 0 chr4 13640516 13640667 -141989453 + B3A SINE B2 1 151 -47 2 689 1203 68 0 39 chr4 13640872 13640887 -141989233 - B1_Mm SINE Alu 0 147 138 2 689 261 0 0 0 chr4 13640887 13640916 -141989204 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 689 1203 68 0 39 chr4 13640916 13641053 -141989067 - B1_Mm SINE Alu -10 137 1 2 689 353 233 229 19 chr4 13641057 13641162 -141988958 - B1_Mus1 SINE Alu -2 147 21 2 689 420 311 7 43 chr4 13641170 13641308 -141988812 + B1F SINE Alu 17 149 0 2 689 293 355 75 16 chr4 13642135 13642321 -141987799 - L2 LINE L2 -565 2854 2658 2 689 2060 101 48 10 chr4 13642413 13642722 -141987398 - ORR1A4 LTR MaLR -8 321 1 2 689 575 51 13 0 chr4 13643231 13643310 -141986810 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 689 1186 87 8 8 chr4 13644265 13644533 -141985587 + (GAAA)n Simple_repeat Simple_repeat 1 268 0 2 689 22 0 0 0 chr4 13645043 13645065 -141985055 + AT_rich Low_complexity Low_complexity 1 22 0 2 689 274 343 50 0 chr4 13646228 13646327 -141983793 - B1F1 SINE Alu -45 104 1 2 689 325 339 35 0 chr4 13646368 13646483 -141983637 + ID_B1 SINE B4 1 119 -105 2 689 586 294 71 80 chr4 13646485 13646974 -141983146 + RMER15 LTR ERVL 1 573 -2 2 689 253 299 70 30 chr4 13647416 13647516 -141982604 - ORR1E LTR MaLR -255 104 1 2 689 239 343 9 38 chr4 13647609 13647715 -141982405 - MLT1A LTR MaLR -15 393 291 2 689 629 201 218 47 chr4 13647909 13648102 -141982018 - URR1A DNA MER1_type 0 226 1 2 689 256 256 67 34 chr4 13648424 13648513 -141981607 - MLT1A LTR MaLR -282 92 1 2 689 3176 38 52 0 chr4 13649185 13649554 -141980566 + RLTR10 LTR ERVK 1 388 -2 2 689 371 354 22 39 chr4 13649556 13649738 -141980382 - MER20 DNA MER1_type -23 196 18 2 689 333 0 0 0 chr4 13650361 13650398 -141979722 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 689 224 30 30 0 chr4 13652712 13652745 -141977375 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 689 350 211 346 0 chr4 13653156 13653260 -141976860 - B1_Mus1 SINE Alu -8 140 1 2 689 376 229 119 46 chr4 13653634 13653785 -141976335 + RSINE1 SINE B4 4 165 0 2 689 414 114 0 0 chr4 13653785 13653855 -141976265 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 689 186 103 0 0 chr4 13653873 13653902 -141976218 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 2 689 1436 18 0 6 chr4 13653902 13654074 -141976046 + (GGAGA)n Simple_repeat Simple_repeat 5 175 0 2 689 234 359 40 47 chr4 13654373 13654522 -141975598 - Charlie4z DNA MER1_type 0 167 20 2 689 183 312 65 0 chr4 13655159 13655236 -141974884 - MIR SINE MIR -128 134 53 2 689 469 255 9 36 chr4 13655340 13655450 -141974670 + PB1D10 SINE Alu 1 107 -10 2 689 456 296 52 17 chr4 13655518 13655690 -141974430 + Lx8 LINE L1 7129 7306 -167 2 689 247 260 55 130 chr4 13656223 13656369 -141973751 + MT2B LTR ERVL 123 257 -344 2 689 423 219 36 38 chr4 13656272 13656398 -141973722 + B1_Mus2 SINE Alu 9 147 0 2 689 305 162 0 14 chr4 13656405 13656474 -141973646 + GA-rich Low_complexity Low_complexity 2 69 0 2 689 1784 122 139 19 chr4 13656510 13656876 -141973244 - RMER17C LTR ERVK 0 410 1 2 689 186 208 0 0 chr4 13656962 13657010 -141973110 + A-rich Low_complexity Low_complexity 1 48 0 2 689 433 255 10 10 chr4 13657086 13657189 -141972931 + PB1D10 SINE Alu 14 116 -1 2 689 222 37 0 0 chr4 13657339 13657366 -141972754 + (A)n Simple_repeat Simple_repeat 1 27 0 3 689 350 222 0 14 chr4 13657693 13657766 -141972354 - ID4 SINE ID -10 73 2 3 689 3712 25 0 0 chr4 13659093 13659489 -141970631 + MTA_Mm LTR MaLR 1 396 0 3 689 415 294 0 9 chr4 13659564 13659674 -141970446 + PB1D10 SINE Alu 3 111 -6 3 689 1162 73 0 0 chr4 13659707 13659844 -141970276 + B1_Mus1 SINE Alu 1 137 -11 3 689 243 0 0 0 chr4 13659844 13659871 -141970249 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 689 290 314 89 153 chr4 13659873 13659997 -141970123 + B1F1 SINE Alu 1 118 -31 3 689 755 112 0 43 chr4 13659998 13660185 -141969935 + GA-rich Low_complexity Low_complexity 2 180 0 3 689 245 312 40 30 chr4 13660254 13660353 -141969767 - PB1D10 SINE Alu -1 119 20 3 689 364 343 105 26 chr4 13660569 13660874 -141969246 - LTR73 LTR ERV1 -243 329 1 3 689 227 175 180 72 chr4 13661286 13661397 -141968723 + MIR SINE MIR 113 235 -27 3 689 1920 174 0 83 chr4 13663566 13663941 -141966179 - ORR1B1 LTR MaLR -10 384 41 3 689 609 279 34 7 chr4 13664036 13664184 -141965936 + B3A SINE B2 5 156 -42 3 689 796 214 46 36 chr4 13665064 13665258 -141964862 - B3A SINE B2 0 198 3 3 689 477 0 0 0 chr4 13665571 13665624 -141964496 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 689 320 160 0 0 chr4 13665827 13665877 -141964243 - MIRm SINE MIR -3 273 224 3 689 611 284 0 0 chr4 13666359 13666500 -141963620 - B1_Mur1 SINE Alu -7 142 2 3 689 243 125 0 0 chr4 13668188 13668228 -141961892 + (A)n Simple_repeat Simple_repeat 1 40 0 3 689 195 39 0 0 chr4 13668609 13668626 -141961494 + (TA)n Simple_repeat Simple_repeat 2 18 0 3 689 333 0 0 0 chr4 13668626 13668663 -141961457 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 689 195 39 0 0 chr4 13668663 13668671 -141961449 + (TA)n Simple_repeat Simple_repeat 2 9 0 3 689 22 35 0 0 chr4 13668686 13668715 -141961405 + AT_rich Low_complexity Low_complexity 1 29 0 3 689 29 28 0 0 chr4 13670298 13670334 -141959786 + GC_rich Low_complexity Low_complexity 1 36 0 3 689 288 77 0 0 chr4 13671953 13671992 -141958128 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 3 689 24 0 0 0 chr4 13673169 13673193 -141956927 + AT_rich Low_complexity Low_complexity 1 24 0 3 689 198 0 0 0 chr4 13674610 13674632 -141955488 + (TGG)n Simple_repeat Simple_repeat 3 24 0 3 689 637 205 0 16 chr4 13675972 13676096 -141954024 - B1F SINE Alu 0 149 28 3 689 189 0 0 0 chr4 13676122 13676143 -141953977 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 689 21 0 0 0 chr4 13677830 13677851 -141952269 + GC_rich Low_complexity Low_complexity 1 21 0 3 689 292 152 30 0 chr4 13678307 13678373 -141951747 + CT-rich Low_complexity Low_complexity 1 68 0 3 689 26 50 0 0 chr4 13678575 13678615 -141951505 + GC_rich Low_complexity Low_complexity 1 40 0 3 689 46 33 0 0 chr4 13678625 13678685 -141951435 + GC_rich Low_complexity Low_complexity 1 60 0 3 689 215 103 51 0 chr4 13680905 13680944 -141949176 + A-rich Low_complexity Low_complexity 1 41 0 3 689 325 259 86 0 chr4 13682154 13682235 -141947885 + ID_B1 SINE B4 85 172 -52 3 689 274 333 71 0 chr4 13682235 13682250 -141947870 + PB1D10 SINE Alu 4 106 -11 3 689 240 226 0 0 chr4 13682263 13682325 -141947795 + GA-rich Low_complexity Low_complexity 1 62 0 3 689 391 310 26 9 chr4 13682647 13682761 -141947359 + ID_B1 SINE B4 1 116 -108 3 689 695 241 0 0 chr4 13683303 13683444 -141946676 - B1_Mur2 SINE Alu -8 141 1 3 689 207 151 0 36 chr4 13683895 13683950 -141946170 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 3 689 290 231 137 12 chr4 13683974 13684086 -141946034 - B1F SINE Alu -26 123 1 3 689 315 0 0 0 chr4 13684168 13684203 -141945917 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 689 239 169 14 0 chr4 13686254 13686325 -141943795 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 689 278 264 236 12 chr4 13686329 13686494 -141943626 - B3 SINE B2 -14 202 1 3 689 207 69 0 0 chr4 13686779 13686808 -141943312 + (C)n Simple_repeat Simple_repeat 1 29 0 3 689 210 271 208 0 chr4 13688312 13688408 -141941712 + PB1D10 SINE Alu 1 116 -1 3 689 235 216 72 108 chr4 13690369 13690452 -141939668 + MTEa LTR MaLR 1 80 -299 3 689 1242 101 0 0 chr4 13690454 13690704 -141939416 + (TTCC)n Simple_repeat Simple_repeat 1 250 0 3 689 289 284 54 54 chr4 13690708 13690838 -141939282 + MTEa LTR MaLR 91 220 -159 3 689 207 0 0 0 chr4 13691151 13691174 -141938946 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 689 265 267 22 11 chr4 13692334 13692425 -141937695 - MTEb LTR MaLR -7 372 281 3 689 2257 170 185 2 chr4 13692847 13693290 -141936830 - RLTR28 LTR ERVL 0 524 1 3 689 217 192 39 0 chr4 13693704 13693756 -141936364 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 3 689 200 31 62 0 chr4 13695405 13695437 -141934683 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 689 213 39 0 0 chr4 13696094 13696120 -141934000 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 689 284 64 21 0 chr4 13696464 13696511 -141933609 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 3 689 1308 260 72 2 chr4 13696634 13697092 -141933028 - RCHARR1 DNA MER1_type 0 974 485 3 689 1265 252 45 17 chr4 13697135 13697490 -141932630 - RCHARR1 DNA MER1_type -608 366 2 3 689 352 209 157 30 chr4 13697895 13698000 -141932120 - B1F SINE Alu -31 118 6 3 689 252 0 0 0 chr4 13699017 13699045 -141931075 + (A)n Simple_repeat Simple_repeat 1 28 0 3 689 290 250 31 61 chr4 13699674 13699772 -141930348 - PB1D7 SINE Alu -2 118 24 3 689 774 153 28 74 chr4 13703715 13703891 -141926229 - Lx4B LINE L1 -4 7054 6887 3 689 246 174 43 75 chr4 13704537 13704630 -141925490 - L1_Rod LINE L1 -6672 500 411 3 689 273 226 0 0 chr4 13706982 13707066 -141923054 + CT-rich Low_complexity Low_complexity 1 84 0 3 689 593 285 0 0 chr4 13707072 13707202 -141922918 - B1_Mur1 SINE Alu -15 134 5 3 689 258 32 0 0 chr4 13707286 13707317 -141922803 + (TATG)n Simple_repeat Simple_repeat 2 32 0 3 689 200 34 0 33 chr4 13711100 13711130 -141918990 + (CAGG)n Simple_repeat Simple_repeat 1 29 0 3 689 261 0 0 0 chr4 13713459 13713488 -141916632 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 689 752 185 0 22 chr4 13713855 13714037 -141916083 + CT-rich Low_complexity Low_complexity 3 180 0 3 689 585 105 0 0 chr4 13714751 13714837 -141915283 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 689 21 0 0 0 chr4 13715151 13715172 -141914948 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 219 250 0 0 chr4 13715607 13715667 -141914453 + A-rich Low_complexity Low_complexity 1 60 0 3 689 180 0 0 0 chr4 13715745 13715765 -141914355 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 689 801 103 0 0 chr4 13716166 13716283 -141913837 + (GA)n Simple_repeat Simple_repeat 2 118 0 3 689 247 278 14 0 chr4 13716339 13716411 -141913709 + ID_B1 SINE B4 151 223 -1 3 689 556 216 0 0 chr4 13716950 13717061 -141913059 - PB1D9 SINE Alu -8 112 2 3 689 261 0 0 0 chr4 13717866 13717895 -141912225 + (T)n Simple_repeat Simple_repeat 1 29 0 3 689 808 211 92 10 chr4 13718408 13718604 -141911516 - B3 SINE B2 -3 213 2 3 689 417 293 0 0 chr4 13718662 13718778 -141911342 + PB1D10 SINE Alu 2 117 0 3 689 312 27 0 0 chr4 13720469 13720506 -141909614 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 689 542 304 12 9 chr4 13720677 13720837 -141909283 + ID_B1 SINE B4 73 227 -65 3 689 200 239 0 0 chr4 13721448 13721494 -141908626 + L2c LINE L2 3342 3387 0 3 689 554 302 0 18 chr4 13721851 13722016 -141908104 - RSINE1 SINE B4 -1 164 3 3 689 351 96 0 0 chr4 13722258 13722310 -141907810 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 689 672 238 12 56 chr4 13722538 13722698 -141907422 + B3A SINE B2 4 156 -42 3 689 190 328 15 0 chr4 13722768 13722835 -141907285 + MER5A DNA MER1_type 14 81 -108 3 689 1976 33 0 0 chr4 13723101 13723342 -141906778 - ORR1A1 LTR MaLR -105 241 1 3 689 23 0 0 0 chr4 13723529 13723552 -141906568 + AT_rich Low_complexity Low_complexity 1 23 0 3 689 216 0 0 0 chr4 13724183 13724207 -141905913 + (T)n Simple_repeat Simple_repeat 1 24 0 3 689 539 29 14 0 chr4 13724455 13724524 -141905596 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 689 227 312 99 17 chr4 13724928 13725101 -141905019 - L2a LINE L2 -125 3301 3111 3 689 360 0 0 0 chr4 13725236 13725276 -141904844 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 3 689 464 191 83 42 chr4 13725508 13725628 -141904492 - ID_B1 SINE B4 -7 217 93 3 689 207 358 50 50 chr4 13725668 13725809 -141904311 + MIRb SINE MIR 61 201 -67 3 689 306 0 0 0 chr4 13726037 13726071 -141904049 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 689 200 167 0 0 chr4 13726465 13726495 -141903625 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 689 240 266 0 30 chr4 13727502 13727568 -141902552 + CT-rich Low_complexity Low_complexity 2 65 0 3 689 308 239 100 22 chr4 13727571 13727661 -141902459 - B1F SINE Alu -45 104 8 3 689 287 260 0 17 chr4 13728159 13728241 -141901879 - ID4_ SINE ID -71 81 3 3 689 351 0 0 0 chr4 13728692 13728731 -141901389 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 689 277 355 115 22 chr4 13728773 13729130 -141900990 - L2a LINE L2 -80 3346 2957 3 689 264 324 20 44 chr4 13731120 13731229 -141898891 + B1F SINE Alu 9 112 -37 3 689 192 283 120 10 chr4 13731463 13731563 -141898557 + L4 LINE RTE 234 344 -1685 3 689 315 192 0 0 chr4 13731816 13731889 -141898231 + (CCCA)n Simple_repeat Simple_repeat 4 76 0 4 689 22 35 0 0 chr4 13732044 13732073 -141898047 + AT_rich Low_complexity Low_complexity 1 29 0 4 689 921 177 22 6 chr4 13732219 13732401 -141897719 - B2_Mm2 SINE B2 -9 186 2 4 689 527 277 0 21 chr4 13732501 13732641 -141897479 - ID_B1 SINE B4 -3 221 85 4 689 24 32 0 0 chr4 13732732 13732763 -141897357 + AT_rich Low_complexity Low_complexity 1 31 0 4 689 217 339 59 66 chr4 13733661 13733683 -141896437 - B1F1 SINE Alu -13 136 113 4 689 3051 168 47 0 chr4 13733683 13734232 -141895888 + RMER15 LTR ERVL 1 575 0 4 689 217 339 59 66 chr4 13734232 13734345 -141895775 - B1F1 SINE Alu -37 112 3 4 689 452 340 43 50 chr4 13734345 13734403 -141895717 - ID SINE ID -145 79 23 4 689 214 302 15 73 chr4 13734350 13734418 -141895702 - ID4_ SINE ID -13 70 7 4 689 292 132 46 28 chr4 13734450 13734559 -141895561 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 689 251 316 9 104 chr4 13734578 13734684 -141895436 - PB1D9 SINE Alu -24 96 1 4 689 320 204 9 72 chr4 13735224 13735335 -141894785 + Lx9 LINE L1 7518 7621 -23 4 689 211 187 26 39 chr4 13735343 13735421 -141894699 + (TTATA)n Simple_repeat Simple_repeat 2 78 0 4 689 266 186 216 0 chr4 13735446 13735543 -141894577 + Lx9 LINE L1 7373 7490 -154 4 689 555 153 0 0 chr4 13735555 13735653 -141894467 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 689 479 49 0 0 chr4 13735657 13735718 -141894402 - B1_Mm SINE Alu -41 106 46 4 689 315 203 40 26 chr4 13735660 13735736 -141894384 - RLTR25B LTR ERVK -525 503 427 4 689 250 274 0 0 chr4 13735850 13735912 -141894208 + T-rich Low_complexity Low_complexity 1 62 0 4 689 531 112 0 0 chr4 13736866 13736946 -141893174 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 689 1570 142 12 200 chr4 13737275 13737359 -141892761 - ORR1A4 LTR MaLR 0 329 288 4 689 1150 68 0 14 chr4 13737359 13737507 -141892613 - B1_Mus2 SINE Alu 0 147 2 4 689 1570 142 12 200 chr4 13737507 13737827 -141892293 - ORR1A4 LTR MaLR -42 287 1 4 689 507 45 0 0 chr4 13737899 13737965 -141892155 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 689 266 338 15 0 chr4 13737969 13738037 -141892083 - ID4 SINE ID -13 70 2 4 689 324 243 64 55 chr4 13738046 13738155 -141891965 - PB1 SINE Alu -4 123 8 4 689 297 0 0 0 chr4 13738936 13738969 -141891151 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 689 213 39 0 0 chr4 13739005 13739031 -141891089 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 689 727 262 0 18 chr4 13739038 13739205 -141890915 - RSINE1 SINE B4 0 165 2 4 689 464 320 14 0 chr4 13739886 13740033 -141890087 + ID_B1 SINE B4 75 223 -1 4 689 251 321 35 69 chr4 13741013 13741100 -141889020 - B1F SINE Alu -59 90 7 4 689 360 0 0 0 chr4 13741101 13741141 -141888979 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 4 689 204 254 16 0 chr4 13741347 13741410 -141888710 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 689 372 22 0 0 chr4 13741411 13741456 -141888664 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 689 527 256 25 0 chr4 13741518 13741639 -141888481 - B1F SINE Alu -6 143 20 4 689 556 307 114 25 chr4 13741707 13742031 -141888089 - Tigger7 DNA MER2_type 0 2491 2139 4 689 535 305 86 43 chr4 13742048 13742281 -141887839 - Tigger7 DNA MER2_type -2222 269 27 4 689 246 176 0 0 chr4 13742372 13742423 -141887697 + CT-rich Low_complexity Low_complexity 4 54 0 4 689 607 252 22 42 chr4 13742423 13742571 -141887549 - ID_B1 SINE B4 -46 246 95 4 689 528 150 18 9 chr4 13742591 13742705 -141887415 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 689 228 35 0 0 chr4 13742705 13742734 -141887386 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 689 741 283 5 20 chr4 13742743 13742933 -141887187 - B3A SINE B2 -14 202 13 4 689 265 328 23 114 chr4 13742956 13743087 -141887033 - PB1D7 SINE Alu 0 120 2 4 689 426 255 0 119 chr4 13743339 13743499 -141886621 - ID_B1 SINE B4 -2 222 82 4 689 1533 265 61 7 chr4 13744353 13744812 -141885308 - Lx8 LINE L1 -640 6833 6350 4 689 739 266 40 54 chr4 13744807 13745161 -141884959 + L1_Mur3 LINE L1 2540 2888 -2992 4 689 680 236 62 29 chr4 13745601 13745810 -141884310 - B3 SINE B2 0 216 1 4 689 198 362 53 45 chr4 13746153 13746286 -141883834 - L2 LINE L2 -464 2955 2822 4 689 396 0 0 0 chr4 13746306 13746350 -141883770 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 689 209 33 0 32 chr4 13746350 13746380 -141883740 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 689 371 261 146 13 chr4 13746565 13746696 -141883424 - B1F2 SINE Alu 0 147 9 4 689 446 294 0 63 chr4 13746714 13746841 -141883279 - B1F SINE Alu -9 140 22 4 689 27 49 0 0 chr4 13746861 13746902 -141883218 + AT_rich Low_complexity Low_complexity 1 41 0 4 689 230 264 11 11 chr4 13746905 13746997 -141883123 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 689 326 275 25 80 chr4 13747020 13747182 -141882938 - RSINE1 SINE B4 -11 154 2 4 689 350 288 17 35 chr4 13747289 13747404 -141882716 - PB1 SINE Alu -1 126 14 4 689 524 302 110 19 chr4 13747483 13747746 -141882374 - RMER5 LTR ERV1 0 534 248 4 689 237 238 31 31 chr4 13747912 13747929 -141882191 + ID_B1 SINE B4 156 220 -4 4 689 241 229 21 0 chr4 13747929 13747977 -141882143 + PB1 SINE Alu 76 124 -3 4 689 372 250 0 0 chr4 13748002 13748082 -141882038 + BC1_Mm scRNA scRNA 14 93 -59 4 689 201 176 0 0 chr4 13748443 13748477 -141881643 + T-rich Low_complexity Low_complexity 1 34 0 4 689 266 0 29 0 chr4 13748628 13748662 -141881458 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 4 689 328 191 79 0 chr4 13748873 13748936 -141881184 - B4A SINE B4 -218 74 7 4 689 987 208 14 24 chr4 13748964 13749171 -141880949 - B3 SINE B2 -10 206 2 4 689 317 312 176 0 chr4 13749171 13749296 -141880824 - HAL1-3A_ME LINE L1 -428 2430 2284 4 689 508 333 31 0 chr4 13749318 13749447 -141880673 - B1F SINE Alu -16 133 1 4 689 258 320 30 40 chr4 13749942 13750043 -141880077 - PB1D7 SINE Alu 0 120 21 4 689 830 283 14 0 chr4 13750814 13751033 -141879087 + ID_B1 SINE B4 1 222 -2 4 689 366 298 114 36 chr4 13751540 13751707 -141878413 + MER3 DNA MER1_type 22 201 -8 4 689 881 232 67 25 chr4 13751972 13752211 -141877909 - MTEb LTR MaLR -12 367 119 4 689 1434 176 35 20 chr4 13752206 13752553 -141877567 + RMER17C LTR ERVK 47 398 -12 4 689 415 309 63 0 chr4 13752553 13752679 -141877441 - MTEb LTR MaLR -245 134 1 4 689 361 294 16 32 chr4 13752861 13752984 -141877136 - Lx9 LINE L1 -425 7219 7099 4 689 528 16 0 0 chr4 13753001 13753062 -141877058 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 689 1939 290 40 12 chr4 13753071 13753727 -141876393 + Lx9 LINE L1 6376 7049 -595 4 689 414 267 19 0 chr4 13753773 13753878 -141876242 - ID_B1 SINE B4 -2 222 116 4 689 357 304 0 29 chr4 13753962 13754067 -141876053 + polypyrimidine Low_complexity Low_complexity 1 102 0 4 689 318 305 0 0 chr4 13754067 13754149 -141875971 + PB1D7 SINE Alu 17 98 -22 4 689 456 19 0 0 chr4 13754161 13754214 -141875906 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 689 681 13 0 0 chr4 13754493 13754571 -141875549 + (TTC)n Simple_repeat Simple_repeat 3 80 0 4 689 1121 68 7 7 chr4 13754573 13754721 -141875399 - B1_Mus1 SINE Alu 0 148 1 4 689 189 0 0 0 chr4 13755306 13755327 -141874793 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 689 566 109 9 0 chr4 13755328 13755438 -141874682 + (GA)n Simple_repeat Simple_repeat 2 112 0 4 689 211 284 81 0 chr4 13755440 13755514 -141874606 - PB1D10 SINE Alu -4 113 34 4 689 417 263 142 79 chr4 13755600 13755790 -141874330 - MLT1A0 LTR MaLR -2 363 162 4 689 267 283 17 0 chr4 13755841 13755901 -141874219 - tRNA-Ala-GCY_ tRNA tRNA -13 62 2 4 689 274 313 0 108 chr4 13755925 13756036 -141874084 - PB1 SINE Alu -27 100 2 4 689 317 269 21 11 chr4 13756036 13756129 -141873991 - MLT1A0 LTR MaLR -258 150 57 4 689 322 271 199 52 chr4 13756125 13756261 -141873859 + ID_B1 SINE B4 68 223 -1 4 689 403 313 66 15 chr4 13756147 13756283 -141873837 + PB1D7 SINE Alu 7 149 0 4 689 329 257 101 0 chr4 13756637 13756746 -141873374 - PB1D9 SINE Alu 0 120 1 4 689 337 331 23 46 chr4 13756773 13756903 -141873217 + ID_B1 SINE B4 92 218 -6 4 689 801 41 0 0 chr4 13756907 13757005 -141873115 + B1_Mm SINE Alu 40 137 -10 4 689 523 310 38 0 chr4 13757089 13757247 -141872873 - RSINE1 SINE B4 0 165 2 4 689 327 268 12 0 chr4 13757260 13757342 -141872778 + Tigger5 DNA MER2_type 2323 2405 -1 4 689 617 196 259 12 chr4 13757405 13757417 -141872703 - B3 SINE B2 -1 215 205 4 689 216 0 0 0 chr4 13757417 13757441 -141872679 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 689 617 196 259 12 chr4 13757441 13757598 -141872522 - B3 SINE B2 -12 204 4 4 689 856 167 35 0 chr4 13757692 13757836 -141872284 - B1_Mur2 SINE Alu 0 149 1 4 689 206 0 69 0 chr4 13758250 13758279 -141871841 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 689 1250 20 0 20 chr4 13758300 13758450 -141871670 - B1_Mm SINE Alu 0 147 1 4 689 211 248 154 68 chr4 13758451 13758568 -141871552 - MIRb SINE MIR -46 222 96 4 689 201 324 0 0 chr4 13760064 13760138 -141869982 + T-rich Low_complexity Low_complexity 1 74 0 4 689 423 281 109 0 chr4 13760866 13760994 -141869126 - B1F2 SINE Alu -5 144 3 4 689 404 267 39 10 chr4 13761006 13761108 -141869012 - PB1D10 SINE Alu 0 117 13 4 689 359 240 148 112 chr4 13761206 13761225 -141868895 - B2_Mm2 SINE B2 -19 176 162 4 689 344 77 0 19 chr4 13761225 13761278 -141868842 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 689 225 0 0 0 chr4 13761278 13761302 -141868818 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 689 559 240 148 112 chr4 13761302 13761450 -141868670 - B3A SINE B2 -32 166 2 4 689 412 117 65 0 chr4 13761503 13761580 -141868540 - HY1 scRNA scRNA -29 83 2 5 689 284 327 20 10 chr4 13761903 13762005 -141868115 + B1F SINE Alu 23 125 -24 5 690 422 272 37 62 chr4 13763983 13764144 -141865976 - ID_B1 SINE B4 0 224 68 5 690 260 252 9 0 chr4 13765410 13765517 -141864603 + (TA)n Simple_repeat Simple_repeat 1 108 0 5 690 274 137 80 27 chr4 13765739 13765814 -141864306 - L1MB3 LINE L1 -14 6169 6091 5 690 459 184 0 0 chr4 13765857 13765958 -141864162 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 690 225 0 0 0 chr4 13765958 13765983 -141864137 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 690 459 184 0 0 chr4 13765983 13765995 -141864125 + (TG)n Simple_repeat Simple_repeat 2 13 0 5 690 234 262 180 0 chr4 13766009 13766070 -141864050 - ID4_ SINE ID -9 74 3 5 690 550 243 29 0 chr4 13766664 13766804 -141863316 - B1_Mur2 SINE Alu -5 144 1 5 690 689 250 7 14 chr4 13767190 13767336 -141862784 - B1_Mur2 SINE Alu -3 146 2 5 690 355 294 25 159 chr4 13767378 13767617 -141862503 - ID_B1 SINE B4 -7 217 11 5 690 862 245 57 0 chr4 13768434 13768646 -141861474 + URR1A DNA MER1_type 3 226 0 5 690 23 33 0 0 chr4 13770132 13770162 -141859958 + AT_rich Low_complexity Low_complexity 1 30 0 5 690 2489 97 8 16 chr4 13770204 13770582 -141859538 - L1_Mus3 LINE L1 -4 6634 6260 5 690 402 21 0 0 chr4 13772136 13772183 -141857937 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 690 501 206 35 56 chr4 13772354 13772498 -141857622 - B1F2 SINE Alu -8 141 1 5 690 1129 75 7 0 chr4 13772591 13772737 -141857383 - B1_Mus1 SINE Alu 0 148 2 5 690 420 20 0 0 chr4 13774642 13774691 -141855429 + (TAA)n Simple_repeat Simple_repeat 2 50 0 5 690 1405 60 5 42 chr4 13774994 13775185 -141854935 - B2_Mm2 SINE B2 -9 186 3 5 690 1630 91 4 12 chr4 13775194 13775439 -141854681 - Lx LINE L1 0 6654 6412 5 690 324 314 78 0 chr4 13775695 13775797 -141854323 - PB1D10 SINE Alu -7 110 1 5 690 389 271 8 0 chr4 13775843 13775976 -141854144 + CT-rich Low_complexity Low_complexity 1 134 0 5 690 744 268 80 22 chr4 13776158 13776383 -141853737 - Lx8 LINE L1 -309 7164 6927 5 690 21 36 0 0 chr4 13777385 13777413 -141852707 + AT_rich Low_complexity Low_complexity 1 28 0 5 690 237 33 0 0 chr4 13777420 13777450 -141852670 + (TTG)n Simple_repeat Simple_repeat 3 32 0 5 690 287 295 45 164 chr4 13777476 13777489 -141852631 - PB1 SINE Alu 0 127 12 5 690 613 235 25 0 chr4 13777489 13777608 -141852512 - ID_B1 SINE B4 -10 214 93 5 690 249 333 105 0 chr4 13778282 13778387 -141851733 - MIR3 SINE MIR -12 196 81 5 690 205 268 0 0 chr4 13779265 13779316 -141850804 - MIRb SINE MIR -1 261 211 5 690 186 348 100 11 chr4 13779334 13779424 -141850696 - MIRb SINE MIR -142 126 29 5 690 295 334 47 17 chr4 13779541 13779685 -141850435 - MIRb SINE MIR -100 168 22 5 690 300 376 40 0 chr4 13779849 13779950 -141850170 + PB1D10 SINE Alu 2 106 -11 5 690 180 0 0 0 chr4 13780093 13780113 -141850007 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 690 1884 233 8 66 chr4 13780163 13780604 -141849516 + Lx6 LINE L1 6835 7253 -207 5 690 378 0 0 0 chr4 13780604 13780646 -141849474 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 690 1884 233 8 66 chr4 13780646 13780704 -141849416 + Lx6 LINE L1 7254 7305 -155 5 690 367 173 109 36 chr4 13780731 13780869 -141849251 - Lx4A LINE L1 0 7058 6911 5 690 2002 189 43 16 chr4 13780867 13781331 -141848789 + Lx4A LINE L1 6590 7458 -2 5 690 252 0 0 0 chr4 13781924 13781952 -141848168 + (T)n Simple_repeat Simple_repeat 1 28 0 5 690 186 43 0 0 chr4 13782685 13782708 -141847412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 690 409 276 71 0 chr4 13782708 13782806 -141847314 - PB1D10 SINE Alu -10 107 3 5 690 346 348 106 19 chr4 13783118 13783279 -141846841 - B2_Mm2 SINE B2 -20 175 1 5 690 370 198 10 62 chr4 13784554 13784651 -141845469 - Charlie15a DNA MER1_type 0 224 133 5 690 967 177 44 6 chr4 13784738 13784920 -141845200 - MIR3 SINE MIR -19 189 1 5 690 410 267 67 0 chr4 13787411 13787501 -141842619 - PB1D10 SINE Alu -9 108 13 5 690 547 282 34 40 chr4 13788769 13788917 -141841203 - B1_Mur1 SINE Alu 0 149 3 5 690 252 238 90 56 chr4 13789031 13789120 -141841000 + MTD LTR MaLR 273 364 -55 5 690 441 0 0 0 chr4 13789932 13789981 -141840139 + (TTA)n Simple_repeat Simple_repeat 3 51 0 5 690 383 274 52 17 chr4 13791002 13791117 -141839003 + PB1D7 SINE Alu 1 119 -1 5 690 905 285 54 7 chr4 13791160 13791436 -141838684 - B4A SINE B4 -2 290 2 5 690 372 43 0 0 chr4 13791549 13791595 -141838525 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 690 514 315 28 0 chr4 13791632 13791775 -141838345 + B1F SINE Alu 2 148 -1 5 690 228 35 0 0 chr4 13791945 13791974 -141838146 + (T)n Simple_repeat Simple_repeat 1 29 0 5 690 610 275 46 12 chr4 13793595 13793768 -141836352 - B3A SINE B2 -16 182 4 5 690 185 83 28 0 chr4 13794392 13794428 -141835692 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 690 2180 70 23 0 chr4 13795511 13795810 -141834310 - L1Md_F2 LINE L1 -1 6581 6276 5 690 494 244 0 24 chr4 13796513 13796639 -141833481 - ID_B1 SINE B4 -21 203 81 5 690 191 216 0 0 chr4 13797510 13797547 -141832573 + MIRm SINE MIR 113 149 -127 5 690 645 69 0 0 chr4 13798984 13799071 -141831049 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 5 690 333 0 0 0 chr4 13799354 13799391 -141830729 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 690 22 35 0 0 chr4 13801061 13801090 -141829030 + AT_rich Low_complexity Low_complexity 1 29 0 5 690 3742 5 0 0 chr4 13801316 13801730 -141828390 + L1Md_A LINE L1 6169 6582 0 5 690 204 67 0 0 chr4 13801740 13801770 -141828350 + (A)n Simple_repeat Simple_repeat 1 30 0 5 690 224 212 15 29 chr4 13802795 13802863 -141827257 + A-rich Low_complexity Low_complexity 4 70 0 5 690 297 257 92 0 chr4 13805040 13805149 -141824971 + PB1D7 SINE Alu 1 119 -1 5 690 425 222 246 45 chr4 13805395 13805574 -141824546 - B3 SINE B2 -1 215 1 5 690 402 273 0 0 chr4 13805781 13806019 -141824101 + (CA)n Simple_repeat Simple_repeat 1 238 0 5 690 386 225 17 6 chr4 13806038 13806212 -141823908 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 690 21 0 0 0 chr4 13807424 13807445 -141822675 + AT_rich Low_complexity Low_complexity 1 21 0 5 690 288 241 26 48 chr4 13807778 13807884 -141822236 - PB1 SINE Alu -1 148 46 5 690 408 308 66 80 chr4 13808707 13808944 -141821176 - B4A SINE B4 -25 267 15 5 690 198 0 0 0 chr4 13810217 13810239 -141819881 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 690 1022 80 51 0 chr4 13810289 13810426 -141819694 + B1_Mus1 SINE Alu 3 146 -2 5 690 31 0 0 0 chr4 13810430 13810461 -141819659 + AT_rich Low_complexity Low_complexity 1 31 0 5 690 477 153 41 0 chr4 13810640 13810738 -141819382 + ORR1D1 LTR MaLR 37 138 -236 5 690 229 319 43 41 chr4 13811762 13811878 -141818242 - MIRb SINE MIR -143 125 2 5 690 840 244 71 38 chr4 13812628 13812891 -141817229 - ORR1D2 LTR MaLR -69 290 1 5 690 258 274 119 28 chr4 13814113 13814222 -141815898 - PB1D7 SINE Alu 0 120 2 5 690 426 39 0 0 chr4 13814425 13814477 -141815643 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 690 255 232 0 0 chr4 13815069 13815125 -141814995 + ID4 SINE ID 2 57 -26 5 690 269 290 17 78 chr4 13815365 13815481 -141814639 - MamRep605 Unknown Unknown -726 150 42 5 690 387 0 0 0 chr4 13817776 13817819 -141812301 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 690 213 39 0 0 chr4 13818264 13818290 -141811830 + (A)n Simple_repeat Simple_repeat 1 26 0 5 690 260 0 57 0 chr4 13818307 13818342 -141811778 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 5 690 22 0 0 0 chr4 13818617 13818639 -141811481 + AT_rich Low_complexity Low_complexity 1 22 0 5 690 300 111 0 0 chr4 13819312 13819357 -141810763 + (T)n Simple_repeat Simple_repeat 1 45 0 5 690 260 111 22 0 chr4 13819811 13819856 -141810264 + (TCC)n Simple_repeat Simple_repeat 3 48 0 5 690 214 116 0 44 chr4 13820201 13820246 -141809874 + (TCTCTG)n Simple_repeat Simple_repeat 5 47 0 5 690 21 0 0 0 chr4 13820480 13820501 -141809619 + AT_rich Low_complexity Low_complexity 1 21 0 5 690 228 122 0 0 chr4 13821650 13821691 -141808429 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 690 208 321 0 0 chr4 13822706 13822759 -141807361 + L2b LINE L2 3312 3364 -11 5 690 4903 122 107 7 chr4 13823219 13824043 -141806077 - RMER17A2 LTR ERVK 0 906 1 5 690 1607 37 0 0 chr4 13824685 13824876 -141805244 - B2_Mm1a SINE B2 -2 191 1 5 690 2157 147 71 0 chr4 13824891 13825258 -141804862 + ORR1B1 LTR MaLR 2 394 0 5 690 28 0 0 0 chr4 13825413 13825441 -141804679 + AT_rich Low_complexity Low_complexity 1 28 0 5 690 545 27 0 0 chr4 13825567 13825640 -141804480 + L1_Mus2 LINE L1 6494 6566 0 5 690 294 234 0 45 chr4 13825768 13825835 -141804285 + RMER15 LTR ERVL 1 64 -511 5 690 2164 171 7 2 chr4 13825855 13826288 -141803832 - L1_Mur2 LINE L1 -3098 2779 2345 5 690 442 246 94 0 chr4 13826310 13826448 -141803672 + Lx6 LINE L1 6703 6853 -607 5 690 236 307 13 0 chr4 13826460 13826535 -141803585 + Lx6 LINE L1 6945 7020 -440 5 690 734 43 11 0 chr4 13826543 13826636 -141803484 + B1_Mus2 SINE Alu 54 147 0 5 690 414 163 0 0 chr4 13826640 13826738 -141803382 + A-rich Low_complexity Low_complexity 1 98 0 6 690 248 287 85 0 chr4 13826738 13826832 -141803288 + Lx5 LINE L1 6636 6737 -313 6 690 1716 11 0 0 chr4 13826843 13827032 -141803088 - B2_Mm1a SINE B2 -3 190 2 6 690 261 0 0 0 chr4 13827091 13827120 -141803000 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 690 441 0 0 0 chr4 13827120 13827168 -141802952 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 690 4185 88 17 10 chr4 13827172 13827208 -141802912 - L1_Mus3 LINE L1 -16 6622 6592 6 690 3157 56 5 8 chr4 13827208 13827605 -141802515 - MTA_Mm LTR MaLR 0 396 1 6 690 4185 88 17 10 chr4 13827605 13828154 -141801966 - L1_Mus3 LINE L1 -47 6591 6033 6 690 3285 153 58 46 chr4 13828178 13829036 -141801084 - RMER6C LTR ERVK 0 720 1 6 690 409 143 0 0 chr4 13829667 13829744 -141800376 + Lx3_Mus LINE L1 6933 7009 0 6 690 1032 81 0 29 chr4 13829766 13829906 -141800214 + B1_Mus1 SINE Alu 1 136 -12 6 690 498 75 0 0 chr4 13829906 13829973 -141800147 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 6 690 477 294 72 20 chr4 13831147 13831436 -141798684 - MLT1A0 LTR MaLR -25 340 1 6 690 276 82 16 32 chr4 13833194 13833257 -141796863 + (CAAAA)n Simple_repeat Simple_repeat 3 64 0 6 690 323 307 51 36 chr4 13833532 13833728 -141796392 + L1MEf LINE L1 1129 1327 -4873 6 690 339 327 22 40 chr4 13833856 13834082 -141796038 + L1M2 LINE L1 2418 2639 -4210 6 690 1332 239 81 50 chr4 13834393 13834750 -141795370 - MTE2a LTR MaLR -10 369 2 6 690 246 307 152 0 chr4 13834943 13835076 -141795044 + MIR SINE MIR 8 168 -108 6 690 514 239 68 16 chr4 13835376 13835567 -141794553 + L1MA6 LINE L1 5948 6148 -152 6 690 246 293 12 35 chr4 13835574 13835659 -141794461 - ID4 SINE ID 0 83 1 6 690 268 242 131 0 chr4 13835744 13835843 -141794277 + L1MA6 LINE L1 6136 6247 -53 6 690 191 241 12 0 chr4 13835922 13836005 -141794115 + (TCTG)n Simple_repeat Simple_repeat 1 84 0 6 690 727 269 116 62 chr4 13836591 13836928 -141793192 - ORR1E LTR MaLR -2 357 3 6 690 279 196 36 0 chr4 13836928 13836984 -141793136 - ID_B1 SINE B4 -19 205 148 6 690 200 91 44 22 chr4 13836984 13837029 -141793091 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 6 690 448 164 52 0 chr4 13837030 13837116 -141793004 - B1_Mur2 SINE Alu -5 144 55 6 690 468 258 155 13 chr4 13837117 13837349 -141792771 - Lx9 LINE L1 -496 7148 6884 6 690 343 306 111 5 chr4 13837345 13837644 -141792476 - L1M2 LINE L1 -1842 4301 3955 6 690 227 163 23 0 chr4 13837656 13837699 -141792421 + L1M4 LINE L1 3880 3923 -2223 6 690 249 57 0 0 chr4 13838148 13838183 -141791937 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 690 307 292 8 84 chr4 13838264 13838395 -141791725 - RSINE1 SINE B4 -43 122 2 6 690 202 302 16 0 chr4 13838543 13838606 -141791514 - MIRb SINE MIR -49 219 156 6 690 227 377 7 28 chr4 13838665 13838807 -141791313 - MIR SINE MIR -122 140 2 6 690 361 180 119 10 chr4 13841380 13841481 -141788639 + L1M3 LINE L1 4546 4657 -1483 6 690 1121 279 31 155 chr4 13841481 13841970 -141788150 - RLTR23 LTR ERV1 0 430 3 6 690 270 284 126 35 chr4 13841978 13842208 -141787912 + L1M3 LINE L1 4657 4907 -1236 6 690 1999 151 3 30 chr4 13842309 13842670 -141787450 + Lx3B LINE L1 6619 6969 -4 6 690 22 0 0 0 chr4 13842679 13842701 -141787419 + AT_rich Low_complexity Low_complexity 1 22 0 6 690 701 328 32 32 chr4 13842715 13843184 -141786936 + L1M3 LINE L1 5351 5819 -481 6 690 679 274 16 22 chr4 13843293 13843476 -141786644 + B3A SINE B2 2 183 -15 6 690 3165 110 29 10 chr4 13843787 13844273 -141785847 + RLTR1C LTR ERV1 1 495 -8 6 690 28 91 0 0 chr4 13844860 13844937 -141785183 + AT_rich Low_complexity Low_complexity 1 77 0 6 690 749 239 0 17 chr4 13845005 13845178 -141784942 + Lx9 LINE L1 6930 7254 -390 6 690 270 208 61 70 chr4 13845178 13845292 -141784828 + RMER17D LTR ERVK 232 344 -545 6 690 1462 244 35 8 chr4 13845317 13845693 -141784427 - Lx9 LINE L1 -291 7353 6968 6 690 356 314 23 62 chr4 13845710 13845839 -141784281 - B4A SINE B4 -13 279 156 6 690 288 0 0 0 chr4 13845998 13846030 -141784090 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 690 360 0 0 0 chr4 13846030 13846069 -141784051 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 690 21 36 0 0 chr4 13846562 13846590 -141783530 + AT_rich Low_complexity Low_complexity 1 28 0 6 690 21 57 0 0 chr4 13847468 13847503 -141782617 + AT_rich Low_complexity Low_complexity 1 35 0 6 690 2771 227 41 5 chr4 13849052 13849659 -141780461 - Lx6 LINE L1 -4 7456 6828 6 690 1550 185 85 38 chr4 13850562 13850927 -141779193 + ORR1C2 LTR MaLR 1 382 -2 6 690 21 36 0 0 chr4 13851616 13851644 -141778476 + AT_rich Low_complexity Low_complexity 1 28 0 6 690 842 85 14 21 chr4 13851644 13851788 -141778332 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 6 690 1104 67 0 0 chr4 13851789 13851924 -141778196 - B1_Mus1 SINE Alu -13 135 1 6 690 288 0 0 0 chr4 13851930 13851962 -141778158 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 6 690 732 227 0 0 chr4 13851964 13852140 -141777980 + CT-rich Low_complexity Low_complexity 1 176 0 6 690 6719 106 21 3 chr4 13852140 13853153 -141776967 - L1_Mus4 LINE L1 -2 6634 5604 6 690 1038 176 85 10 chr4 13853259 13853460 -141776660 + B3 SINE B2 1 216 0 6 690 7784 4 0 0 chr4 13854246 13855150 -141774970 - L1Md_A LINE L1 -1 6581 5678 6 690 21 71 0 0 chr4 13855252 13855294 -141774826 + AT_rich Low_complexity Low_complexity 1 42 0 6 690 333 0 0 0 chr4 13855687 13855724 -141774396 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 690 306 0 0 0 chr4 13855724 13855757 -141774363 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 690 1010 88 0 0 chr4 13856152 13856289 -141773831 - L1_Mus1 LINE L1 -356 5527 5391 6 690 7121 70 21 0 chr4 13856290 13857284 -141772836 + L1_Mus1 LINE L1 5554 6566 -1 6 690 5861 113 52 0 chr4 13857345 13858266 -141771854 + L1Md_T LINE L1 237 1205 -5411 6 690 34141 39 0 1 chr4 13858234 13862715 -141767405 + L1Md_T LINE L1 1108 5586 -297 6 690 8285 40 0 13 chr4 13862715 13863749 -141766371 + L1Md_T LINE L1 5587 6582 0 6 690 501 241 9 0 chr4 13864333 13864441 -141765679 - Lx2A LINE L1 -671 6337 6229 6 690 34135 69 2 14 chr4 13864491 13870633 -141759487 - L1Md_F2 LINE L1 0 6582 512 6 690 319 212 101 0 chr4 13870803 13870902 -141759218 - Lx9 LINE L1 -3 7641 7533 6 690 183 80 0 0 chr4 13870914 13870939 -141759181 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 690 4519 231 64 20 chr4 13871020 13872238 -141757882 - Lx9 LINE L1 -232 7412 6142 6 690 978 186 59 10 chr4 13872488 13872798 -141757322 - Lx5 LINE L1 -707 6343 5887 6 690 2444 200 72 2 chr4 13872799 13873310 -141756810 + Lx5 LINE L1 6352 6898 -152 6 690 736 278 71 17 chr4 13873312 13873845 -141756275 - L1MA5 LINE L1 -410 5890 5303 6 690 518 88 25 0 chr4 13874448 13874528 -141755592 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 6 690 253 386 228 0 chr4 13874563 13874690 -141755430 - RSINE1 SINE B4 -6 159 4 6 690 404 351 29 24 chr4 13874846 13875056 -141755064 + MLT2B3 LTR ERVL 5 215 -339 6 690 351 98 0 0 chr4 13875526 13875587 -141754533 + (T)n Simple_repeat Simple_repeat 1 61 0 6 690 706 330 61 89 chr4 13876007 13876499 -141753621 - MLT1K LTR MaLR -55 540 63 6 690 289 346 59 0 chr4 13876630 13876766 -141753354 + MIRc SINE MIR 72 215 -53 6 690 294 29 0 0 chr4 13877060 13877095 -141753025 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 690 586 301 99 77 chr4 13877171 13877523 -141752597 + Kanga1 DNA Tc2 152 511 -1234 6 690 279 337 102 0 chr4 13877526 13877731 -141752389 + Kanga1 DNA Tc2 1496 1721 -24 6 690 365 315 52 46 chr4 13877935 13877947 -141752173 + B4 SINE B4 79 168 -124 6 690 452 246 111 37 chr4 13877947 13878082 -141752038 + B1_Mur1 SINE Alu 5 149 0 6 690 222 62 0 0 chr4 13878091 13878123 -141751997 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 6 690 1460 248 63 71 chr4 13878284 13878588 -141751532 - Lx6 LINE L1 -26 7434 7142 6 690 234 0 0 0 chr4 13878588 13878614 -141751506 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 690 1460 240 69 51 chr4 13878614 13878995 -141751125 - Lx6 LINE L1 -319 7141 6681 6 690 356 277 93 37 chr4 13879208 13879237 -141750883 - HAL1-3A_ME LINE L1 -408 2450 2423 6 690 1347 72 0 0 chr4 13879237 13879417 -141750703 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 690 356 277 93 37 chr4 13879417 13879548 -141750572 - HAL1-3A_ME LINE L1 -436 2422 2282 6 690 430 275 69 42 chr4 13880584 13880728 -141749392 - B1F SINE Alu -1 148 1 6 690 225 294 43 0 chr4 13881422 13881514 -141748606 - L1M4 LINE L1 -460 5724 5629 6 690 454 292 59 18 chr4 13881541 13881813 -141748307 - L1M4 LINE L1 -932 5214 4932 6 690 295 220 32 42 chr4 13881841 13881936 -141748184 - L1M4 LINE L1 -498 5686 5593 6 690 1696 221 28 3 chr4 13881948 13882307 -141747813 - Lx5 LINE L1 -13 7037 6670 6 690 1777 177 32 3 chr4 13882297 13882637 -141747483 + Lx5 LINE L1 6324 6673 -377 6 690 487 277 74 65 chr4 13882648 13882796 -141747324 - L1M4 LINE L1 -576 5608 5477 6 690 234 0 0 0 chr4 13882796 13882822 -141747298 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 690 216 97 0 0 chr4 13882822 13882852 -141747268 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 690 487 277 74 65 chr4 13882852 13883054 -141747066 - L1M4 LINE L1 -708 5476 5255 6 690 217 216 59 0 chr4 13883129 13883180 -141746940 - B3 SINE B2 -100 116 63 6 690 21 0 0 0 chr4 13883277 13883298 -141746822 + AT_rich Low_complexity Low_complexity 1 21 0 6 690 255 292 56 11 chr4 13883584 13883674 -141746446 + MER5A DNA MER1_type 96 189 0 6 690 192 348 32 43 chr4 13883698 13883791 -141746329 + MER5B DNA MER1_type 20 111 -67 6 690 1942 115 69 0 chr4 13884365 13884669 -141745451 - Lx2A LINE L1 -9 6999 6675 6 690 217 115 82 0 chr4 13884675 13884736 -141745384 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 690 361 276 80 16 chr4 13884737 13884862 -141745258 - B1F SINE Alu -6 143 11 6 690 27 0 0 0 chr4 13887297 13887324 -141742796 + AT_rich Low_complexity Low_complexity 1 27 0 6 690 216 328 85 8 chr4 13887336 13887465 -141742655 - MIRb SINE MIR -20 248 110 6 690 520 279 0 37 chr4 13887482 13887566 -141742554 + ID_B1 SINE B4 88 216 -8 6 690 222 268 52 35 chr4 13887566 13887616 -141742504 + PB1D7 SINE Alu 60 112 -8 6 690 288 0 0 0 chr4 13887616 13887648 -141742472 + (CAG)n Simple_repeat Simple_repeat 1 32 0 6 690 271 201 45 33 chr4 13889421 13889503 -141740617 + B4 SINE B4 6 92 -73 6 690 490 286 24 94 chr4 13890512 13890809 -141739311 + L1MA5 LINE L1 2504 2779 -3364 6 690 230 341 121 36 chr4 13890852 13890992 -141739128 - RMER15 LTR ERVL -76 499 348 7 690 239 363 56 8 chr4 13891148 13891273 -141738847 - Lx8 LINE L1 -295 7178 7048 7 690 583 248 93 39 chr4 13891281 13891534 -141738586 + L1MA5 LINE L1 2765 3034 -3109 6 690 387 0 0 0 chr4 13891534 13891577 -141738543 + (GGA)n Simple_repeat Simple_repeat 3 45 0 7 690 855 184 5 75 chr4 13891580 13891780 -141738340 + B2_Mm2 SINE B2 5 190 -5 7 690 583 248 93 39 chr4 13891780 13891832 -141738288 + L1MA5 LINE L1 3035 3091 -3052 6 690 1182 41 7 0 chr4 13893186 13893332 -141736788 - B1_Mm SINE Alu 0 147 1 7 690 195 42 0 0 chr4 13893393 13893417 -141736703 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 690 502 216 11 17 chr4 13893417 13893596 -141736524 + (TA)n Simple_repeat Simple_repeat 1 178 0 7 691 553 235 86 29 chr4 13893907 13894181 -141735939 + L1MA5 LINE L1 3456 3665 -2212 6 691 526 285 31 80 chr4 13894247 13894433 -141735687 + B3A SINE B2 25 199 -17 7 691 232 229 29 0 chr4 13894435 13894505 -141735615 + (TA)n Simple_repeat Simple_repeat 1 72 0 7 691 715 274 143 3 chr4 13894536 13894647 -141735473 + L1MA5 LINE L1 5663 5789 -511 6 691 537 16 0 0 chr4 13894647 13894709 -141735411 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 691 715 274 143 3 chr4 13894709 13894890 -141735230 + L1MA5 LINE L1 5790 5995 -305 6 691 252 0 0 0 chr4 13896128 13896156 -141733964 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 691 262 316 144 66 chr4 13896160 13896431 -141733689 - B4A SINE B4 0 292 1 7 691 210 234 21 0 chr4 13896713 13896760 -141733360 + C-rich Low_complexity Low_complexity 3 50 0 7 691 276 347 20 0 chr4 13896760 13896858 -141733262 - B1F1 SINE Alu -9 140 41 7 691 304 313 168 13 chr4 13897007 13897156 -141732964 - MTEb LTR MaLR -14 365 194 7 691 496 307 47 77 chr4 13897692 13897992 -141732128 + B4 SINE B4 1 291 -1 7 691 596 48 12 0 chr4 13898010 13898094 -141732026 + (CA)n Simple_repeat Simple_repeat 1 85 0 7 691 3891 171 26 78 chr4 13898501 13899387 -141730733 - L1_Mur2 LINE L1 -87 5790 4951 7 691 564 148 0 0 chr4 13899385 13899473 -141730647 + Lx5 LINE L1 5927 6014 -1036 7 691 868 246 62 18 chr4 13899473 13899697 -141730423 + Lx5 LINE L1 6814 7047 -3 7 691 246 377 32 13 chr4 13900061 13900217 -141729903 + MIRb SINE MIR 80 238 -30 7 691 464 164 0 22 chr4 13900749 13900787 -141729333 + A-rich Low_complexity Low_complexity 1 38 0 7 691 456 19 0 0 chr4 13900787 13900840 -141729280 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 691 464 164 0 22 chr4 13900840 13900867 -141729253 + A-rich Low_complexity Low_complexity 39 63 0 7 691 1205 41 7 0 chr4 13900867 13901013 -141729107 + B1_Mm SINE Alu 1 147 0 7 691 464 164 0 22 chr4 13901013 13901083 -141729037 + A-rich Low_complexity Low_complexity 64 133 0 7 691 355 338 22 0 chr4 13901623 13901762 -141728358 + B1F1 SINE Alu 5 146 -3 7 691 557 320 94 11 chr4 13901931 13902206 -141727914 + MLT1C LTR MaLR 170 467 0 7 691 765 200 104 33 chr4 13902655 13902867 -141727253 - Lx7 LINE L1 -494 7202 6976 7 691 394 217 157 30 chr4 13902871 13903051 -141727069 + Lx7 LINE L1 7554 7696 0 7 691 266 319 158 46 chr4 13903548 13903788 -141726332 + L2 LINE L2 2706 2972 -447 7 691 660 174 87 37 chr4 13905631 13905792 -141724328 - RMER1C Other Other -54 1288 1120 7 691 2926 221 54 22 chr4 13905797 13906465 -141723655 + Lx5 LINE L1 6360 7048 -2 7 691 2059 226 113 31 chr4 13906477 13907014 -141723106 - RMER1C Other Other -214 1128 400 7 691 583 333 98 42 chr4 13907266 13907673 -141722447 + MLT1J2 LTR MaLR 4 433 -15 7 691 339 281 52 0 chr4 13907903 13907999 -141722121 - MER5A1 DNA MER1_type -5 161 61 7 691 24 32 0 0 chr4 13908054 13908085 -141722035 + AT_rich Low_complexity Low_complexity 1 31 0 7 691 21 57 0 0 chr4 13908238 13908273 -141721847 + AT_rich Low_complexity Low_complexity 1 35 0 7 691 189 0 0 0 chr4 13908486 13908507 -141721613 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 691 358 281 0 0 chr4 13909144 13909233 -141720887 + PB1D10 SINE Alu 27 115 -2 7 691 5831 80 21 16 chr4 13909360 13910896 -141719224 - L1VL2 LINE L1 -1790 1825 284 7 691 326 314 72 47 chr4 13910952 13911237 -141718883 - L1MA4A LINE L1 -1479 5994 5717 7 691 515 286 26 44 chr4 13911261 13911521 -141718599 - L1MA4A LINE L1 -643 5657 5416 7 691 21 0 0 0 chr4 13911521 13911542 -141718578 + AT_rich Low_complexity Low_complexity 1 21 0 7 691 1304 294 93 24 chr4 13911706 13912583 -141717537 - L1MA4A LINE L1 -752 5391 4454 7 691 209 33 33 0 chr4 13912593 13912623 -141717497 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 691 417 262 122 8 chr4 13912664 13912786 -141717334 + MTD LTR MaLR 219 354 -65 7 691 6988 80 36 18 chr4 13912786 13913013 -141717107 - RLTR13D5 LTR ERVK 0 1023 797 7 691 2191 76 0 10 chr4 13913013 13913318 -141716802 - L1Md_T LINE L1 0 6582 6281 7 691 6988 80 36 18 chr4 13913318 13914095 -141716025 - RLTR13D5 LTR ERVK -227 796 1 7 691 249 200 73 44 chr4 13914096 13914164 -141715956 + MTD LTR MaLR 350 419 0 7 691 208 324 14 0 chr4 13914708 13914782 -141715338 - MIR SINE MIR -10 252 178 7 691 180 315 74 0 chr4 13914841 13914895 -141715225 - MIR SINE MIR -180 82 25 7 691 212 208 0 20 chr4 13914989 13915038 -141715082 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 7 691 828 318 18 9 chr4 13915134 13915356 -141714764 - B4A SINE B4 -68 224 1 7 691 396 88 0 0 chr4 13915674 13915731 -141714389 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 691 686 246 68 19 chr4 13916034 13916241 -141713879 + ID_B1 SINE B4 2 218 -6 7 691 34 0 0 0 chr4 13916361 13916395 -141713725 + AT_rich Low_complexity Low_complexity 1 34 0 7 691 207 0 0 0 chr4 13917082 13917105 -141713015 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 7 691 1013 189 5 0 chr4 13917334 13917524 -141712596 - L1_Mm LINE L1 -837 5046 4856 7 691 2876 115 7 2 chr4 13917524 13917959 -141712161 + L1_Mus4 LINE L1 6200 6636 0 7 691 29 0 0 0 chr4 13918929 13918958 -141711162 + AT_rich Low_complexity Low_complexity 1 29 0 7 691 180 0 0 0 chr4 13918990 13919010 -141711110 + (TA)n Simple_repeat Simple_repeat 1 20 0 7 691 3357 31 5 0 chr4 13919063 13919455 -141710665 - MTA_Mm LTR MaLR -2 394 1 7 691 24 53 0 0 chr4 13919510 13919548 -141710572 + AT_rich Low_complexity Low_complexity 1 38 0 7 691 298 340 160 0 chr4 13919793 13919943 -141710177 + MER5B DNA MER1_type 5 178 0 7 691 679 274 26 118 chr4 13922579 13922885 -141707235 + MER121 Unknown Unknown 16 293 -119 7 691 321 153 97 48 chr4 13923315 13923418 -141706702 - Lx9 LINE L1 -1 7643 7536 7 691 587 243 7 14 chr4 13923441 13923583 -141706537 + Lx9 LINE L1 7337 7477 -167 7 691 629 136 0 43 chr4 13924265 13924450 -141705670 + A-rich Low_complexity Low_complexity 3 179 0 7 691 1069 81 0 13 chr4 13924461 13924602 -141705518 + B1_Mus1 SINE Alu 1 141 -7 7 691 201 74 0 0 chr4 13924602 13924629 -141705491 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 7 691 225 328 86 10 chr4 13925817 13925933 -141704187 + MIRm SINE MIR 26 154 -114 7 691 224 369 0 37 chr4 13926164 13926271 -141703849 + MIRb SINE MIR 155 257 -11 7 691 241 362 0 41 chr4 13927442 13927540 -141702580 + L2c LINE L2 3294 3387 0 7 691 687 108 0 0 chr4 13928009 13928111 -141702009 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 7 691 399 286 44 25 chr4 13928686 13928844 -141701276 - MIR SINE MIR -37 225 65 7 691 447 68 0 0 chr4 13930660 13930719 -141699401 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 7 691 243 323 102 120 chr4 13930830 13931213 -141698907 - MLT1A1 LTR MaLR -4 404 29 7 691 640 234 5 112 chr4 13931548 13931736 -141698384 + MTEa LTR MaLR 204 371 -8 7 691 1355 281 74 6 chr4 13931744 13932095 -141698025 + MTEa-int LTR MaLR 1 375 -1205 7 691 327 244 0 71 chr4 13932114 13932198 -141697922 + MTE2a LTR MaLR 230 307 -72 7 691 225 0 0 0 chr4 13932198 13932223 -141697897 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 691 729 103 0 0 chr4 13932223 13932340 -141697780 + (GA)n Simple_repeat Simple_repeat 2 118 0 7 691 1170 0 0 0 chr4 13932352 13932482 -141697638 + (GGGAGA)n Simple_repeat Simple_repeat 6 135 0 7 691 369 153 0 0 chr4 13933535 13933607 -141696513 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 691 343 78 20 0 chr4 13933649 13933700 -141696420 + HAL1-3A_ME LINE L1 1976 2027 -831 7 691 195 42 0 0 chr4 13933988 13934012 -141696108 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 691 201 361 0 0 chr4 13934408 13934469 -141695651 - L2c LINE L2 -3 3384 3324 7 691 251 319 32 21 chr4 13934648 13934741 -141695379 - MIRb SINE MIR -103 165 72 7 691 290 300 156 0 chr4 13934989 13935079 -141695041 + PB1D10 SINE Alu 2 105 -12 7 691 10569 67 3 1 chr4 13935134 13936500 -141693620 + L1_Mm LINE L1 4218 5586 -297 7 691 7984 44 10 6 chr4 13936500 13937480 -141692640 + L1Md_F2 LINE L1 5587 6570 -12 7 691 540 0 0 0 chr4 13937677 13937737 -141692383 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 691 336 64 0 0 chr4 13937737 13937784 -141692336 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 691 289 296 19 0 chr4 13939841 13939949 -141690171 - L1MD2 LINE L1 -373 5986 5877 7 691 378 306 71 5 chr4 13940052 13940249 -141689871 - L1MD2 LINE L1 -498 5744 5535 7 691 198 0 0 0 chr4 13941213 13941235 -141688885 + (T)n Simple_repeat Simple_repeat 1 22 0 7 691 22 0 0 0 chr4 13941447 13941469 -141688651 + AT_rich Low_complexity Low_complexity 1 22 0 7 691 203 136 0 43 chr4 13941655 13941701 -141688419 + GA-rich Low_complexity Low_complexity 4 47 0 7 691 300 278 62 44 chr4 13941954 13942067 -141688053 - MER63D DNA AcHobo -945 116 2 7 691 282 340 185 20 chr4 13942243 13942492 -141687628 + B4A SINE B4 1 290 -2 7 691 522 270 69 10 chr4 13942758 13942960 -141687160 + Lx9 LINE L1 7255 7468 -176 7 691 291 360 61 61 chr4 13943168 13943547 -141686573 + L2a LINE L2 3048 3426 0 7 691 24 0 0 0 chr4 13943856 13943880 -141686240 + AT_rich Low_complexity Low_complexity 1 24 0 7 691 1895 319 44 61 chr4 13945222 13946183 -141683937 + Lx8 LINE L1 6383 7326 -147 7 691 341 260 93 28 chr4 13946364 13946471 -141683649 - PB1D7 SINE Alu -6 114 1 7 691 2237 124 11 0 chr4 13946501 13946873 -141683247 + L1_Mur2 LINE L1 3834 4209 -1668 7 691 802 297 130 38 chr4 13947484 13947960 -141682160 - MLT2B1 LTR ERVL 0 520 1 8 691 21 104 0 0 chr4 13948471 13948548 -141681572 + AT_rich Low_complexity Low_complexity 1 77 0 8 691 332 380 29 21 chr4 13948651 13948791 -141681329 - MER47B DNA MER2_type -171 247 107 8 691 2020 134 25 6 chr4 13948791 13949106 -141681014 + ORR1A4 LTR MaLR 1 321 -8 8 691 184 312 49 24 chr4 13949638 13949720 -141680400 + L2c LINE L2 3246 3329 -58 8 691 268 316 13 0 chr4 13950244 13950320 -141679800 + MLT1I LTR MaLR 81 157 -254 8 691 432 0 0 0 chr4 13951082 13951130 -141678990 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 691 22 0 0 0 chr4 13952161 13952183 -141677937 + AT_rich Low_complexity Low_complexity 1 22 0 8 691 233 0 62 0 chr4 13952656 13952688 -141677432 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 8 691 7714 45 4 1 chr4 13954127 13955408 -141674712 - L1Md_F2 LINE L1 0 6582 5299 8 691 204 261 0 0 chr4 13955883 13955929 -141674191 + T-rich Low_complexity Low_complexity 1 46 0 8 691 232 247 27 0 chr4 13956311 13956384 -141673736 - Lx9 LINE L1 -34 7610 7536 8 691 459 0 0 0 chr4 13956398 13956449 -141673671 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 691 501 353 69 30 chr4 13956502 13956733 -141673387 + MTEb LTR MaLR 120 359 -20 8 691 343 296 70 0 chr4 13958508 13958623 -141671497 - Lx8 LINE L1 -179 7294 7172 8 691 2839 203 35 69 chr4 13958645 13959413 -141670707 - Lx2B LINE L1 -7 6993 6252 8 691 570 288 72 10 chr4 13959387 13959594 -141670526 - Lx8 LINE L1 -302 7171 6952 8 691 293 294 11 11 chr4 13960581 13960674 -141669446 + CT-rich Low_complexity Low_complexity 3 95 0 8 691 472 328 17 0 chr4 13960681 13960800 -141669320 - ID_B1 SINE B4 -20 204 84 8 691 638 327 150 9 chr4 13960817 13961156 -141668964 - MLT1E2 LTR MaLR -15 612 226 8 691 489 34 0 0 chr4 13961497 13961556 -141668564 + (TA)n Simple_repeat Simple_repeat 1 59 0 8 691 225 244 88 25 chr4 13961780 13961860 -141668260 - MLT1J2 LTR MaLR -17 431 347 8 691 292 330 63 89 chr4 13961963 13962153 -141667967 + ORR1E LTR MaLR 1 185 -174 8 691 1693 204 59 8 chr4 13962448 13962804 -141667316 + ORR1D1 LTR MaLR 1 374 0 8 691 2300 226 15 40 chr4 13962804 13962868 -141667252 + ORR1D1-int LTR MaLR 1 61 -1309 8 691 261 0 0 0 chr4 13962868 13962897 -141667223 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 691 2300 226 15 40 chr4 13962897 13963362 -141666758 + ORR1D1-int LTR MaLR 62 517 -853 8 691 1287 332 68 9 chr4 13963440 13963984 -141666136 + Lx8 LINE L1 6602 7177 -296 8 691 247 347 0 0 chr4 13964932 13965007 -141665113 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 691 288 311 176 7 chr4 13965836 13965972 -141664148 - RMER30 DNA MER1_type -1 201 43 8 691 1068 294 36 75 chr4 13966111 13966549 -141663571 - MLT2C2 LTR ERVL -41 423 3 8 691 386 359 24 4 chr4 13967502 13967711 -141662409 - MIR SINE MIR -43 225 16 8 691 493 257 0 10 chr4 13967734 13967836 -141662284 - B1_Mur2 SINE Alu -46 103 3 8 691 39040 11 0 2 chr4 13969084 13976272 -141653848 - L1Md_A LINE L1 0 6582 1 8 691 275 235 48 19 chr4 13976517 13976621 -141653499 + (TATG)n Simple_repeat Simple_repeat 4 110 0 8 691 2489 175 11 38 chr4 13977648 13978118 -141652002 + RMER13B LTR ERVK 1 457 -451 8 691 201 24 47 47 chr4 13978485 13978528 -141651592 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 8 691 23 33 0 0 chr4 13978953 13978983 -141651137 + AT_rich Low_complexity Low_complexity 1 30 0 8 691 852 279 82 9 chr4 13979766 13980109 -141650011 + L1MA5 LINE L1 5630 5997 -303 8 691 1417 245 52 35 chr4 13980123 13980491 -141649629 + ORR1D1 LTR MaLR 1 374 0 8 691 1026 289 38 14 chr4 13980613 13980771 -141649349 + Lx9 LINE L1 6584 6750 -894 8 691 414 0 0 0 chr4 13980771 13980817 -141649303 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 691 1026 289 38 14 chr4 13980817 13981002 -141649118 + Lx9 LINE L1 6751 6935 -709 8 691 401 284 21 0 chr4 13981042 13981185 -141648935 - Lx9 LINE L1 -453 7191 6914 8 691 450 267 8 16 chr4 13981187 13981309 -141648811 + Lx8 LINE L1 7200 7320 -153 8 691 687 216 106 25 chr4 13981428 13981790 -141648330 + Lx9 LINE L1 7311 7643 -1 8 691 254 178 23 52 chr4 13982388 13982560 -141647560 + (TATG)n Simple_repeat Simple_repeat 4 170 0 8 691 626 318 52 41 chr4 13982561 13982830 -141647290 - B4A SINE B4 -1 291 20 8 691 206 370 74 20 chr4 13982999 13983148 -141646972 + L2b LINE L2 3188 3344 -31 8 691 528 236 0 0 chr4 13983685 13983863 -141646257 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 691 221 304 0 0 chr4 13983867 13983936 -141646184 + (TATG)n Simple_repeat Simple_repeat 4 72 0 8 691 434 250 4 0 chr4 13983939 13984165 -141645955 + (TG)n Simple_repeat Simple_repeat 1 226 0 8 691 1079 189 23 31 chr4 13986200 13986456 -141643664 - L1_Mur2 LINE L1 -495 5382 5129 8 691 1286 256 33 34 chr4 13986485 13987159 -141642961 + Lx5 LINE L1 6031 6899 -561 8 691 944 266 15 28 chr4 13987503 13987801 -141642319 + Lx5 LINE L1 6583 6881 -177 8 691 288 169 0 27 chr4 13987817 13987890 -141642230 + Lx6 LINE L1 7366 7436 -24 8 691 827 328 77 19 chr4 13987913 13988174 -141641946 + B4A SINE B4 12 287 -5 8 691 408 71 0 0 chr4 13988185 13988241 -141641879 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 691 197 373 27 0 chr4 13988461 13988536 -141641584 - MIR SINE MIR -58 150 74 8 691 207 182 0 0 chr4 13989031 13989064 -141641056 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 691 576 231 34 40 chr4 13989386 13989535 -141640585 + B1F1 SINE Alu 1 148 -1 8 691 342 321 0 0 chr4 13989535 13989627 -141640493 - ID4 SINE ID -59 93 2 8 691 334 306 74 0 chr4 13989848 13989956 -141640164 - L1MD2 LINE L1 -419 5940 5825 8 691 4967 121 52 1 chr4 13990001 13990774 -141639346 + Lx3B LINE L1 6158 6969 -4 8 691 480 97 21 11 chr4 13990854 13990948 -141639172 + (TA)n Simple_repeat Simple_repeat 2 96 0 8 691 342 193 73 9 chr4 13990949 13991059 -141639061 - L1MA8 LINE L1 -86 6205 6089 8 691 423 0 0 0 chr4 13992815 13992862 -141637258 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 691 541 366 121 8 chr4 13993316 13993564 -141636556 - B4A SINE B4 -14 278 3 8 691 190 194 106 54 chr4 13994650 13994757 -141635363 + MIR SINE MIR 115 228 -40 8 691 271 256 27 144 chr4 13994857 13994936 -141635184 + RMER15 LTR ERVL 57 132 -443 8 691 907 244 153 21 chr4 13994936 13995263 -141634857 + ORR1D1 LTR MaLR 1 370 -4 8 691 866 289 40 36 chr4 13995263 13995578 -141634542 + RMER15 LTR ERVL 133 561 -14 8 691 465 19 0 0 chr4 13995725 13995779 -141634341 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 691 315 0 0 0 chr4 13995779 13995813 -141634307 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 691 661 289 128 0 chr4 13996131 13996318 -141633802 + B3 SINE B2 1 211 -5 8 691 234 269 29 15 chr4 13996459 13996527 -141633593 - MER63D DNA AcHobo -676 385 317 8 691 191 355 111 32 chr4 13996994 13997183 -141632937 + MIRc SINE MIR 48 251 -17 8 691 1066 249 119 20 chr4 13997408 13997753 -141632367 - MTEb LTR MaLR 0 379 1 8 691 1007 186 28 66 chr4 13997870 13998083 -141632037 - URR1A DNA MER1_type -21 205 1 8 691 495 0 0 0 chr4 13998299 13998354 -141631766 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 691 309 26 0 0 chr4 13998354 13998391 -141631729 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 691 504 235 14 56 chr4 13999603 13999747 -141630373 + MTEa LTR MaLR 2 139 -240 8 691 1498 247 61 59 chr4 14000034 14000338 -141629782 + Lx6 LINE L1 7006 7304 -156 1 691 3474 30 0 0 chr4 14000338 14000734 -141629386 + MTA_Mm LTR MaLR 1 396 0 2 691 9205 34 0 1 chr4 14000734 14001833 -141628287 + MTA_Mm-int LTR MaLR 1 1098 0 2 691 3413 40 0 0 chr4 14001833 14002229 -141627891 + MTA_Mm LTR MaLR 1 396 0 2 691 1498 247 61 59 chr4 14002229 14002348 -141627772 + Lx6 LINE L1 7305 7430 -30 1 691 245 164 48 16 chr4 14002726 14002788 -141627332 + MTEb LTR MaLR 301 364 -15 3 691 536 272 123 74 chr4 14003987 14004312 -141625808 - MTEb LTR MaLR -33 346 6 4 691 457 327 105 64 chr4 14004366 14004709 -141625411 - MLT1A0 LTR MaLR 0 374 18 5 691 597 64 0 0 chr4 14005378 14005456 -141624664 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 691 1889 231 135 54 chr4 14005739 14006495 -141623625 - RMER1B Other Other -16 1050 38 7 691 441 0 0 0 chr4 14006667 14006716 -141623404 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 691 1420 188 13 42 chr4 14007991 14008302 -141621818 - MER121 Unknown Unknown -52 360 59 9 691 279 0 0 0 chr4 14008677 14008708 -141621412 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 691 459 0 0 0 chr4 14008708 14008758 -141621362 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 691 238 145 15 46 chr4 14008912 14008977 -141621143 + A-rich Low_complexity Low_complexity 2 64 0 1 691 246 329 93 75 chr4 14009806 14009967 -141620153 - MLT1G LTR MaLR -15 576 413 1 691 209 283 0 0 chr4 14010231 14010277 -141619843 + polypurine Low_complexity Low_complexity 2 47 0 1 691 416 335 73 13 chr4 14011514 14011816 -141618304 - L2a LINE L2 -33 3393 3074 1 691 305 297 38 30 chr4 14012058 14012190 -141617930 - MER77 LTR ERVL -4 603 471 1 691 424 302 72 27 chr4 14012213 14012506 -141617614 - L1MEc LINE L1 -5495 905 600 1 691 264 344 48 8 chr4 14012581 14012707 -141617413 - L1MEc LINE L1 -6072 328 198 1 691 1934 138 18 60 chr4 14012710 14013041 -141617079 - ORR1A2 LTR MaLR -8 319 3 1 691 212 200 18 0 chr4 14013365 14013420 -141616700 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 691 297 0 0 0 chr4 14017321 14017354 -141612766 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 691 326 127 25 0 chr4 14017357 14017436 -141612684 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 2 691 681 56 0 0 chr4 14017456 14017546 -141612574 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 691 207 0 0 0 chr4 14017721 14017744 -141612376 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 2 691 275 284 12 24 chr4 14018557 14018640 -141611480 - MIRb SINE MIR -76 192 111 2 691 267 361 21 70 chr4 14019201 14019487 -141610633 - L3 LINE CR1 -753 3736 3465 2 691 270 0 0 0 chr4 14019744 14019774 -141610346 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 691 32 57 0 0 chr4 14020358 14020411 -141609709 + AT_rich Low_complexity Low_complexity 1 53 0 2 691 1232 247 59 78 chr4 14020427 14021098 -141609022 - Lx6 LINE L1 -55 7405 6457 2 691 274 339 0 0 chr4 14021256 14021318 -141608802 + B4A SINE B4 85 146 -146 2 691 405 330 0 9 chr4 14021263 14021370 -141608750 + PB1D10 SINE Alu 7 112 -5 3 691 192 77 0 0 chr4 14021380 14021406 -141608714 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 3 691 400 344 19 6 chr4 14021954 14022112 -141608008 + MIR SINE MIR 29 188 -74 3 691 290 393 9 0 chr4 14024292 14024404 -141605716 - MLT1A0 LTR MaLR -100 265 153 3 691 216 0 0 0 chr4 14024632 14024656 -141605464 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 692 233 234 76 59 chr4 14025701 14025819 -141604301 + Charlie1 DNA MER1_type 971 1090 -1691 3 692 27 29 0 0 chr4 14025828 14025862 -141604258 + AT_rich Low_complexity Low_complexity 1 34 0 3 692 28 0 0 0 chr4 14026387 14026415 -141603705 + AT_rich Low_complexity Low_complexity 1 28 0 3 692 246 128 0 0 chr4 14027880 14027919 -141602201 + (T)n Simple_repeat Simple_repeat 1 39 0 3 692 1179 48 0 7 chr4 14027919 14028066 -141602054 - B1_Mm SINE Alu 0 147 2 3 692 2021 208 32 5 chr4 14031700 14032102 -141598018 - MTC LTR MaLR -8 413 1 4 692 234 0 0 0 chr4 14032168 14032194 -141597926 + (A)n Simple_repeat Simple_repeat 1 26 0 4 692 1029 39 0 0 chr4 14032320 14032450 -141597670 + B2_Mm1a SINE B2 2 131 -62 4 692 396 59 0 0 chr4 14032460 14032511 -141597609 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 692 261 139 0 0 chr4 14032604 14032647 -141597473 + (CATA)n Simple_repeat Simple_repeat 4 46 0 4 692 201 74 0 0 chr4 14032649 14032676 -141597444 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 692 480 365 6 6 chr4 14032721 14032745 -141597375 - B3A SINE B2 -26 172 149 4 692 369 0 0 0 chr4 14032745 14032786 -141597334 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 692 480 365 6 6 chr4 14032786 14032932 -141597188 - B3A SINE B2 -50 148 3 4 692 448 260 129 6 chr4 14032932 14033110 -141597010 - L1MB3 LINE L1 -56 6127 5928 4 692 30 0 0 0 chr4 14034956 14034986 -141595134 + AT_rich Low_complexity Low_complexity 1 30 0 4 692 423 0 0 0 chr4 14036123 14036170 -141593950 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 692 1078 90 0 0 chr4 14036170 14036315 -141593805 - B1_Mus1 SINE Alu -2 146 2 5 692 574 317 86 30 chr4 14036837 14037071 -141593049 - B4 SINE B4 -2 290 44 5 692 567 341 137 52 chr4 14037110 14037928 -141592192 - L1ME3 LINE L1 -8 6154 5270 5 692 324 299 84 16 chr4 14038360 14038550 -141591570 - L1ME3 LINE L1 -2477 3669 3467 5 692 284 253 13 26 chr4 14038573 14038650 -141591470 + CT-rich Low_complexity Low_complexity 3 78 0 5 692 460 297 84 65 chr4 14038781 14039102 -141591018 - L1MD LINE L1 -2788 3358 3032 5 692 657 318 234 8 chr4 14039173 14039678 -141590442 - L1ME3 LINE L1 -3221 2925 2307 5 692 276 298 58 0 chr4 14040127 14040248 -141589872 - L1M1 LINE L1 -424 5876 5749 5 692 1140 271 71 24 chr4 14040259 14040599 -141589521 + MTEb LTR MaLR 21 376 -3 5 692 200 233 0 48 chr4 14040648 14040711 -141589409 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 5 692 24 0 0 0 chr4 14040752 14040776 -141589344 + AT_rich Low_complexity Low_complexity 1 24 0 5 692 3449 33 0 0 chr4 14042329 14042723 -141587397 + MTA_Mm LTR MaLR 1 394 -2 6 692 7970 69 29 2 chr4 14042725 14043794 -141586326 + MTA_Mm-int LTR MaLR 1 1098 0 6 692 3504 15 2 0 chr4 14043794 14044189 -141585931 + MTA_Mm LTR MaLR 1 396 0 6 692 23 33 0 0 chr4 14044339 14044369 -141585751 + AT_rich Low_complexity Low_complexity 1 30 0 6 692 431 326 46 42 chr4 14044394 14044679 -141585441 - L1MEf LINE L1 -1842 4304 4019 6 692 962 313 38 9 chr4 14044816 14045195 -141584925 - Lx9 LINE L1 -173 7471 6925 6 692 377 290 107 129 chr4 14045226 14045674 -141584446 - L1MEf LINE L1 -2179 3967 3530 6 692 324 318 82 53 chr4 14046016 14046298 -141583822 - L1MEf LINE L1 -3116 3030 2741 6 692 34 55 0 0 chr4 14046683 14046738 -141583382 + AT_rich Low_complexity Low_complexity 1 55 0 6 692 402 74 0 0 chr4 14046884 14046938 -141583182 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 692 647 81 0 10 chr4 14046994 14047094 -141583026 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 692 304 281 113 14 chr4 14047097 14047238 -141582882 - L1MEf LINE L1 -4097 2145 1991 6 692 10648 216 82 51 chr4 14047700 14050063 -141580057 - Lx7 LINE L1 0 7696 5241 6 692 375 23 0 0 chr4 14050063 14050107 -141580013 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 692 10648 174 36 30 chr4 14050107 14050128 -141579992 - L1_Mur3 LINE L1 -640 5240 5240 6 692 661 255 7 0 chr4 14050128 14050269 -141579851 - B1_Mur3 SINE Alu -7 142 1 6 692 10648 174 36 30 chr4 14050269 14051950 -141578170 - Lx7 LINE L1 -640 5240 3528 6 692 2384 193 17 6 chr4 14051955 14052435 -141577685 - L1_Mur2 LINE L1 -2068 3809 3325 7 692 2554 156 62 50 chr4 14052435 14052950 -141577170 - RLTR20D LTR ERVK 0 568 48 7 692 1556 158 56 35 chr4 14052981 14053003 -141577117 - MYSERV16_I-int LTR ERVK -2 2324 2300 7 692 180 0 0 0 chr4 14053003 14053023 -141577097 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 692 1556 158 56 35 chr4 14053023 14053210 -141576910 - MYSERV16_I-int LTR ERVK -27 2299 2105 7 692 2424 77 62 3 chr4 14053210 14053535 -141576585 - ORR1A1 LTR MaLR 0 346 3 7 692 1556 158 56 35 chr4 14053535 14053697 -141576423 - MYSERV16_I-int LTR ERVK -222 2104 1945 7 692 8896 7 0 0 chr4 14053701 14055190 -141574930 - L1Md_A LINE L1 0 6582 5094 7 692 2769 147 69 18 chr4 14055192 14055741 -141574379 - MYSERV16_I-int LTR ERVK -372 1954 1378 7 692 4229 156 26 38 chr4 14055744 14056590 -141573530 - L1_Mur2 LINE L1 -2547 3330 2495 7 692 470 47 0 0 chr4 14056648 14056712 -141573408 - ETnERV2-int LTR ERVK -1903 5503 5440 7 692 272 277 159 15 chr4 14056898 14057030 -141573090 + L1MD LINE L1 4792 4942 -1204 7 692 431 310 60 40 chr4 14057124 14057275 -141572845 + RSINE1 SINE B4 6 159 -6 7 692 314 319 82 16 chr4 14057293 14057475 -141572645 + L1MD LINE L1 5010 5203 -943 7 692 458 228 39 10 chr4 14057496 14057598 -141572522 + B4 SINE B4 159 263 -29 7 692 710 314 66 56 chr4 14057773 14058060 -141572060 + MTEb LTR MaLR 3 292 -87 8 692 34962 69 6 9 chr4 14058108 14064706 -141565414 - L1Md_F2 LINE L1 -1 6581 98 8 692 5519 177 35 18 chr4 14064726 14066062 -141564058 - L1_Mur3 LINE L1 -3429 2448 1041 8 692 224 100 25 0 chr4 14066062 14066102 -141564018 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 692 668 162 156 0 chr4 14066102 14066154 -141563966 - L1_Mur3 LINE L1 -6046 1040 975 8 692 1135 241 4 26 chr4 14066170 14066438 -141563682 - L1_Mur3 LINE L1 -7167 561 300 8 692 1782 245 33 2 chr4 14066966 14067359 -141562761 - MTD LTR MaLR 0 419 15 8 692 1029 274 112 119 chr4 14067478 14068042 -141562078 - RMER21B LTR ERV1 -275 567 8 8 692 219 69 0 0 chr4 14068371 14068400 -141561720 + (A)n Simple_repeat Simple_repeat 1 29 0 8 692 433 173 453 5 chr4 14068412 14068604 -141561516 - LTR82B Low_complexity ERVL -545 285 8 8 692 904 272 127 11 chr4 14068916 14069191 -141560929 - MTD LTR MaLR 0 419 113 8 692 1072 66 0 0 chr4 14069886 14070023 -141560097 - B1_Mm SINE Alu -10 137 1 8 692 268 338 94 14 chr4 14070114 14070252 -141559868 - LTR16B2 LTR ERVL -234 228 80 9 692 1163 231 106 35 chr4 14070276 14070617 -141559503 + ORR1D1 LTR MaLR 2 366 -8 9 692 585 152 0 0 chr4 14072066 14072171 -141557949 + (TA)n Simple_repeat Simple_repeat 2 106 0 9 692 324 277 8 16 chr4 14072186 14072307 -141557813 + L1MA6 LINE L1 6048 6167 -133 9 692 338 227 48 0 chr4 14072610 14072689 -141557431 - PB1D10 SINE Alu -17 103 19 9 692 270 0 0 0 chr4 14073345 14073375 -141556745 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 692 697 135 8 8 chr4 14073375 14073502 -141556618 + GA-rich Low_complexity Low_complexity 2 128 0 9 692 503 368 52 41 chr4 14073545 14073814 -141556306 - B4A SINE B4 -9 283 12 9 692 38 0 0 0 chr4 14076469 14076507 -141553613 + AT_rich Low_complexity Low_complexity 1 38 0 9 692 371 378 63 0 chr4 14077484 14077611 -141552509 + RSINE1 SINE B4 11 145 -20 9 692 735 115 23 0 chr4 14077612 14077742 -141552378 + (TCTCCC)n Simple_repeat Simple_repeat 6 138 0 1 692 186 43 0 0 chr4 14077770 14077793 -141552327 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1 692 1937 332 42 18 chr4 14077933 14078760 -141551360 - Lx8 LINE L1 -397 7076 6230 1 692 2185 231 2 10 chr4 14078773 14079189 -141550931 - MTC LTR MaLR -8 413 1 1 692 1227 94 0 0 chr4 14079594 14079774 -141550346 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 692 30640 128 28 7 chr4 14080177 14083227 -141546893 + L1_Mus1 LINE L1 351 3475 -2408 1 692 189 94 0 0 chr4 14083227 14083259 -141546861 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 1 692 30640 102 9 6 chr4 14083259 14086413 -141543707 + L1_Mus1 LINE L1 3476 6630 -8 1 692 309 379 121 40 chr4 14086794 14087190 -141542930 + L2b LINE L2 2933 3360 -15 1 692 501 62 0 0 chr4 14087202 14087267 -141542853 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 692 189 159 15 31 chr4 14087282 14087347 -141542773 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 1 692 3054 61 12 15 chr4 14087971 14088372 -141541748 + MTB LTR MaLR 1 400 0 1 692 225 83 0 0 chr4 14089112 14089148 -141540972 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 692 396 0 0 0 chr4 14089462 14089506 -141540614 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 692 511 250 73 0 chr4 14089513 14089637 -141540483 - B3 SINE B2 -73 143 11 1 692 225 365 126 45 chr4 14091233 14091431 -141538689 + MIRb SINE MIR 19 232 -36 1 692 204 111 0 0 chr4 14091820 14091856 -141538264 + (TCTCTG)n Simple_repeat Simple_repeat 3 38 0 1 692 330 98 0 0 chr4 14091856 14091906 -141538214 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 692 627 266 7 0 chr4 14094307 14094446 -141535674 + Lx8 LINE L1 6618 6757 -716 1 692 294 29 0 0 chr4 14094965 14095000 -141535120 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 692 7898 82 9 2 chr4 14095154 14096607 -141533513 - L1_Mus3 LINE L1 0 6638 5176 1 692 226 306 32 86 chr4 14096617 14096710 -141533410 + MTEa LTR MaLR 5 92 -287 1 692 228 325 120 60 chr4 14096663 14096879 -141533241 + MLT2B5 LTR ERVL 171 399 -318 1 692 246 121 31 94 chr4 14097336 14097400 -141532720 - MER102b DNA MER1_type -108 233 174 1 692 294 29 0 0 chr4 14098126 14098161 -141531959 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 692 204 303 37 43 chr4 14098642 14098804 -141531316 + L4 LINE RTE 148 308 -1721 1 692 31 68 0 0 chr4 14099042 14099101 -141531019 + AT_rich Low_complexity Low_complexity 1 59 0 1 692 579 294 7 29 chr4 14099215 14099355 -141530765 - RSINE1 SINE B4 -8 157 21 1 692 592 319 41 25 chr4 14099427 14099671 -141530449 + L4 LINE RTE 699 946 -1083 1 692 344 310 86 8 chr4 14101452 14101569 -141528551 + B1F SINE Alu 12 137 -12 1 692 310 386 29 0 chr4 14102435 14102606 -141527514 - MIRb SINE MIR -52 216 41 1 692 316 345 128 36 chr4 14103570 14103907 -141526213 - LTR16A LTR ERVL -79 372 5 1 692 468 319 75 46 chr4 14104347 14104587 -141525533 - Charlie16a DNA MER1_type -47 295 49 1 692 214 388 24 16 chr4 14105288 14105411 -141524709 - L4 LINE RTE -685 1344 1221 1 692 980 210 53 19 chr4 14106583 14106792 -141523328 + B3 SINE B2 1 216 0 1 692 224 386 12 8 chr4 14107383 14107527 -141522593 + MIR SINE MIR 31 179 -89 1 692 414 322 90 6 chr4 14107916 14108094 -141522026 - B3A SINE B2 0 198 6 1 692 240 189 111 40 chr4 14108135 14108234 -141521886 + L1MB4 LINE L1 6058 6163 -17 1 692 303 237 12 0 chr4 14108422 14108519 -141521601 - L1MB2 LINE L1 -225 5943 5846 1 692 246 278 0 0 chr4 14108705 14108759 -141521361 + ID4_ SINE ID 5 58 -25 1 692 692 171 77 8 chr4 14109077 14109207 -141520913 + B1_Mus2 SINE Alu 9 147 0 1 692 225 362 25 0 chr4 14109204 14109284 -141520836 - Charlie5 DNA MER1_type -2521 103 22 1 692 277 272 33 58 chr4 14111275 14111295 -141518825 + L1MB1 LINE L1 5449 5463 -726 1 692 2138 140 15 77 chr4 14111295 14111698 -141518422 - ORR1C1 LTR MaLR 0 378 1 1 692 272 300 30 0 chr4 14111698 14111798 -141518322 + L1MB1 LINE L1 5464 5566 -602 1 692 381 277 78 57 chr4 14111868 14112197 -141517923 + L1MB1 LINE L1 5599 5913 -255 1 692 195 129 0 0 chr4 14112224 14112255 -141517865 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 692 239 86 0 0 chr4 14112259 14112294 -141517826 - B3A SINE B2 -162 36 2 1 692 2167 147 15 0 chr4 14112358 14112699 -141517421 + ORR1B2 LTR MaLR 1 346 -21 1 692 727 297 52 20 chr4 14112701 14113045 -141517075 + L1MA10 LINE L1 5972 6326 -8 1 692 180 258 52 73 chr4 14113064 14113160 -141516960 - L2a LINE L2 -99 3327 3234 1 692 252 309 0 0 chr4 14113212 14113280 -141516840 + ID_B1 SINE B4 150 217 -7 1 692 246 261 29 14 chr4 14113316 14113386 -141516734 + CT-rich Low_complexity Low_complexity 5 75 0 1 692 182 389 10 69 chr4 14113394 14113496 -141516624 - MIRm SINE MIR -29 247 152 1 692 297 295 41 21 chr4 14114494 14114591 -141515529 + Charlie4z DNA MER1_type 68 166 -1 1 692 239 152 0 0 chr4 14114641 14114674 -141515446 - B1_Mus1 SINE Alu -114 34 2 1 692 295 312 36 7 chr4 14116013 14116152 -141513968 + L1MC4 LINE L1 6855 6997 -1045 1 692 245 29 29 0 chr4 14116821 14116855 -141513265 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 692 351 0 0 0 chr4 14117150 14117189 -141512931 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 692 263 389 70 9 chr4 14118061 14118175 -141511945 + MIRb SINE MIR 13 133 -135 1 692 806 258 42 5 chr4 14118256 14118447 -141511673 - B3 SINE B2 -4 212 15 1 692 200 114 29 0 chr4 14118668 14118703 -141511417 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1 692 24 53 0 0 chr4 14118718 14118756 -141511364 + AT_rich Low_complexity Low_complexity 1 38 0 1 692 563 222 6 44 chr4 14118757 14118917 -141511203 - Lx7 LINE L1 0 7696 7543 1 692 296 280 43 11 chr4 14119221 14119315 -141510805 - MLT1B LTR MaLR -42 348 252 1 692 235 250 135 38 chr4 14119414 14119514 -141510606 - MLT1B LTR MaLR -263 204 93 1 692 216 0 0 0 chr4 14119514 14119538 -141510582 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 1 692 235 250 135 38 chr4 14119538 14119570 -141510550 - MLT1B LTR MaLR -375 92 59 1 692 37889 28 2 6 chr4 14119912 14126061 -141504059 - L1Md_T LINE L1 -2 6580 459 1 692 2984 106 31 6 chr4 14128078 14128591 -141501529 - Lx2B LINE L1 -1 6996 6359 1 692 51 17 0 0 chr4 14129989 14130047 -141500073 + AT_rich Low_complexity Low_complexity 1 58 0 1 692 672 287 40 6 chr4 14130150 14130325 -141499795 - ID_B1 SINE B4 -42 182 2 1 692 234 254 151 27 chr4 14131889 14131962 -141498158 - ID4_ SINE ID 0 83 2 1 692 186 175 25 0 chr4 14132707 14132747 -141497373 - MIR SINE MIR 0 262 222 1 692 366 235 68 10 chr4 14133695 14133798 -141496322 + MTEb LTR MaLR 108 216 -163 1 692 275 233 17 0 chr4 14133850 14133910 -141496210 + MTEb LTR MaLR 317 377 -2 1 692 1108 287 61 10 chr4 14134528 14134919 -141495201 + Lx8 LINE L1 6921 7331 -142 1 692 6657 58 1 5 chr4 14135027 14135909 -141494211 - L1Md_F2 LINE L1 -13 6569 5691 1 692 531 332 72 29 chr4 14135960 14136218 -141493902 + B4A SINE B4 2 272 -20 1 692 503 43 14 0 chr4 14136218 14136288 -141493832 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 692 531 332 72 29 chr4 14136288 14136308 -141493812 + B4A SINE B4 273 292 0 1 692 261 230 0 26 chr4 14136921 14136997 -141493123 + Lx7 LINE L1 7611 7684 -12 1 692 221 292 40 27 chr4 14137110 14137184 -141492936 - RSINE1 SINE B4 0 165 91 1 692 709 160 25 0 chr4 14137239 14137358 -141492762 - MT2A LTR ERVL -409 124 3 1 692 236 346 12 47 chr4 14137358 14137437 -141492683 - RSINE1 SINE B4 -85 80 5 1 692 5272 142 96 3 chr4 14137719 14138792 -141491328 + Lx LINE L1 5344 6518 -136 1 692 204 40 0 0 chr4 14138792 14138817 -141491303 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 1 692 5272 139 95 4 chr4 14138817 14138900 -141491220 + Lx LINE L1 6519 6612 -42 1 692 459 81 0 0 chr4 14138900 14138962 -141491158 - B2_Mm2 SINE B2 -131 64 3 1 692 444 210 145 0 chr4 14140848 14140972 -141489148 - B1_Mur1 SINE Alu -7 142 1 1 692 537 266 69 72 chr4 14141070 14141290 -141488830 - L1_Rod LINE L1 -203 5644 5421 1 692 201 74 0 0 chr4 14141290 14141317 -141488803 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 692 537 266 69 72 chr4 14141317 14141444 -141488676 - L1_Rod LINE L1 -427 5420 5298 1 692 642 348 64 27 chr4 14141432 14142061 -141488059 + Lx8 LINE L1 6819 7470 -3 1 692 24 0 0 0 chr4 14143291 14143315 -141486805 + AT_rich Low_complexity Low_complexity 1 24 0 1 692 612 324 175 15 chr4 14143705 14144100 -141486020 - Tigger7 DNA MER2_type -242 463 6 1 692 259 301 0 76 chr4 14145083 14145162 -141484958 + MER81 DNA AcHobo 41 113 -1 1 692 1118 83 0 0 chr4 14146396 14146541 -141483579 + B1_Mus1 SINE Alu 2 146 -2 1 692 27 73 0 0 chr4 14146761 14146816 -141483304 + AT_rich Low_complexity Low_complexity 1 55 0 1 692 182 118 0 29 chr4 14146867 14146902 -141483218 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 1 692 399 358 20 40 chr4 14146996 14147197 -141482923 + B3A SINE B2 2 198 0 1 692 662 296 152 17 chr4 14147251 14147481 -141482639 + B4 SINE B4 22 282 -10 1 692 26 0 0 0 chr4 14147623 14147649 -141482471 + AT_rich Low_complexity Low_complexity 1 26 0 1 692 30879 81 2 3 chr4 14147918 14153238 -141476882 + L1Md_F2 LINE L1 177 5589 -297 1 692 7993 55 1 0 chr4 14153238 14154231 -141475889 + L1Md_F2 LINE L1 5590 6583 -2 1 692 1481 287 130 14 chr4 14154241 14154796 -141475324 - Lx6 LINE L1 -46 7414 6796 1 86 6792 231 35 113 chr4 14154784 14156839 -141473281 - Lx6 LINE L1 -967 6493 4398 1 693 2247 43 26 20 chr4 14156839 14157144 -141472976 + IAPLTR2b LTR ERVK 1 307 -20 1 693 6792 231 35 113 chr4 14157144 14158038 -141472082 - Lx6 LINE L1 -967 4397 3484 1 693 372 77 0 0 chr4 14158039 14158091 -141472029 + (TTG)n Simple_repeat Simple_repeat 2 53 0 1 693 1057 208 10 10 chr4 14158109 14158308 -141471812 + RMER20B LTR ERVK 3 201 -426 1 693 189 0 0 0 chr4 14158309 14158330 -141471790 + (T)n Simple_repeat Simple_repeat 1 21 0 1 693 1112 130 21 11 chr4 14159041 14159228 -141470892 - URR1B DNA MER1_type 0 225 37 1 693 1452 224 64 105 chr4 14159223 14159661 -141470459 + RMER20B LTR ERVK 208 627 0 1 693 8322 186 51 35 chr4 14159703 14161041 -141469079 - Lx6 LINE L1 -2416 3464 2087 1 693 216 0 0 0 chr4 14161041 14161065 -141469055 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 693 8322 186 51 35 chr4 14161065 14161838 -141468282 - Lx6 LINE L1 -3794 2086 1320 1 693 290 67 22 0 chr4 14161886 14161931 -141468189 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2 693 539 234 166 14 chr4 14161931 14162226 -141467894 - Lx6 LINE L1 -6626 1102 763 1 693 26 30 0 0 chr4 14162470 14162503 -141467617 + AT_rich Low_complexity Low_complexity 1 33 0 2 693 668 303 36 54 chr4 14162520 14162855 -141467265 - Lx8 LINE L1 -28 7445 7117 2 693 215 357 0 56 chr4 14162860 14162949 -141467171 + B4 SINE B4 56 139 -153 2 693 717 320 43 93 chr4 14162949 14163355 -141466765 - Lx8 LINE L1 -361 7112 6733 2 693 2872 49 3 0 chr4 14163355 14163700 -141466420 - ORR1A1 LTR MaLR 0 346 1 2 693 717 320 43 93 chr4 14163700 14163778 -141466342 - Lx8 LINE L1 -741 6732 6652 2 693 1086 309 35 12 chr4 14163789 14164192 -141465928 + Lx8 LINE L1 6241 6652 -821 2 693 5986 121 33 2 chr4 14164499 14165407 -141464713 + RMER17B LTR ERVK 1 936 -22 2 693 1396 30 10 0 chr4 14165483 14165687 -141464433 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 2 693 473 0 18 0 chr4 14166907 14166964 -141463156 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 2 693 1023 287 69 43 chr4 14167362 14167955 -141462165 + RMER1B Other Other 15 412 -654 2 693 31531 90 8 5 chr4 14167951 14173455 -141456665 - L1Md_F LINE L1 -163 5720 201 2 693 607 271 324 42 chr4 14173660 14174022 -141456098 + RMER20B LTR ERVK 123 586 -41 2 693 451 250 242 55 chr4 14174130 14174312 -141455808 + MTEb LTR MaLR 1 216 -163 2 693 309 151 0 0 chr4 14174312 14174365 -141455755 + CT-rich Low_complexity Low_complexity 1 53 0 2 693 486 250 97 28 chr4 14174378 14174522 -141455598 + MTEb LTR MaLR 201 354 -25 2 693 189 94 0 0 chr4 14175403 14175435 -141454685 + (A)n Simple_repeat Simple_repeat 1 32 0 2 693 501 17 0 0 chr4 14175676 14175734 -141454386 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 693 300 111 0 0 chr4 14175779 14175824 -141454296 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 693 5506 211 50 42 chr4 14176017 14176303 -141453817 - Lx7 LINE L1 -653 7043 6761 2 693 1188 111 0 0 chr4 14176303 14176483 -141453637 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 693 5506 204 53 27 chr4 14176483 14177924 -141452196 - Lx7 LINE L1 -936 6760 5270 2 693 2644 159 24 89 chr4 14177923 14178584 -141451536 - Lx7 LINE L1 -1511 4369 3752 2 693 2042 245 45 20 chr4 14178583 14179322 -141450798 - Lx7 LINE L1 -7055 673 18 2 693 1126 95 0 0 chr4 14179416 14179563 -141450557 - B1_Mus2 SINE Alu 0 147 1 2 693 21420 25 34 19 chr4 14179993 14181613 -141448507 - L1Md_A LINE L1 0 6582 4919 2 693 243 167 46 77 chr4 14181613 14181678 -141448442 + RMER20A LTR ERVK 186 248 -268 2 693 21420 25 34 19 chr4 14181678 14183500 -141446620 - L1Md_A LINE L1 0 4918 3045 2 693 453 328 45 30 chr4 14185199 14185435 -141444685 + B4A SINE B4 1 231 -61 2 693 852 178 14 0 chr4 14185435 14185581 -141444539 + B1_Mur3 SINE Alu 1 148 -1 2 693 453 323 42 11 chr4 14185581 14185594 -141444526 + B4A SINE B4 232 244 -48 2 693 183 42 0 0 chr4 14185955 14185979 -141444141 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 693 186 71 0 0 chr4 14185976 14186004 -141444116 + (T)n Simple_repeat Simple_repeat 1 28 0 2 693 182 208 19 0 chr4 14186232 14186285 -141443835 + CT-rich Low_complexity Low_complexity 1 54 0 2 693 228 333 24 12 chr4 14186285 14186367 -141443753 - B1F SINE Alu -1 148 66 2 693 212 149 21 0 chr4 14186463 14186510 -141443610 + GA-rich Low_complexity Low_complexity 2 49 0 2 693 201 133 0 0 chr4 14186684 14186714 -141443406 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 693 28017 110 16 21 chr4 14189636 14195688 -141434432 - L1_Mus2 LINE L1 0 6566 536 2 693 259 267 30 27 chr4 14195691 14195803 -141434317 - L1VL1 LINE L1 -6345 77 6 2 693 378 297 138 25 chr4 14196108 14196398 -141433722 + L1ME3B LINE L1 5445 5763 -399 2 693 675 164 20 0 chr4 14196808 14196960 -141433160 + CT-rich Low_complexity Low_complexity 2 156 0 2 693 275 28 28 0 chr4 14196963 14196999 -141433121 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 2 693 261 289 93 14 chr4 14197770 14197927 -141432193 - MIRb SINE MIR -76 186 20 2 693 244 265 102 102 chr4 14198027 14198174 -141431946 + RSINE1 SINE B4 14 160 -5 2 693 844 337 64 14 chr4 14198304 14198662 -141431458 + MLT1B LTR MaLR 5 380 -10 2 693 248 261 78 9 chr4 14198979 14199095 -141431025 + L1ME3B LINE L1 6108 6231 -9 2 693 300 240 9 43 chr4 14199153 14199258 -141430862 - PB1D10 SINE Alu 0 120 14 2 693 6270 82 7 7 chr4 14199310 14200161 -141429959 + L1Md_F2 LINE L1 5732 6582 0 2 693 260 354 20 0 chr4 14201864 14201963 -141428157 - MIR3 SINE MIR -11 197 97 2 693 1137 75 0 7 chr4 14202982 14203129 -141426991 - B1_Mus2 SINE Alu 0 147 2 2 693 190 264 115 26 chr4 14203502 14203615 -141426505 - MIRb SINE MIR -29 239 117 2 693 4840 57 2 0 chr4 14203760 14204390 -141425730 + L1Md_F2 LINE L1 4956 5586 -297 2 693 8229 37 2 2 chr4 14204390 14205386 -141424734 + L1Md_F2 LINE L1 5587 6582 0 2 693 210 71 0 0 chr4 14207373 14207401 -141422719 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 693 1856 196 13 75 chr4 14209374 14209758 -141420362 - ORR1B1 LTR MaLR 0 394 1 2 693 378 187 22 0 chr4 14210403 14210494 -141419626 - Lx9 LINE L1 -1 7643 7551 2 693 272 361 65 0 chr4 14210606 14210714 -141419406 - MER5A1 DNA MER1_type 0 166 52 2 693 21 0 0 0 chr4 14210811 14210832 -141419288 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 547 345 0 0 chr4 14210998 14211140 -141418980 - RSINE1 SINE B4 -12 153 12 2 693 345 283 86 7 chr4 14211227 14211404 -141418716 + L1ME1 LINE L1 4400 4592 -1554 2 693 569 262 7 211 chr4 14211440 14211720 -141418400 - ID_B1 SINE B4 0 224 2 2 693 528 226 108 42 chr4 14211741 14211861 -141418259 - B1_Mur3 SINE Alu -13 136 9 2 693 315 281 36 15 chr4 14211995 14212132 -141417988 + L1ME1 LINE L1 4765 4904 -1242 2 693 224 30 0 29 chr4 14212295 14212329 -141417791 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 693 2482 300 50 5 chr4 14212346 14213226 -141416894 + Lx8 LINE L1 6438 7357 -116 2 693 383 312 158 24 chr4 14213351 14213680 -141416440 + L1ME1 LINE L1 5710 6085 -94 2 693 2741 234 70 62 chr4 14213758 14214552 -141415568 - RMER1C Other Other -1 1341 541 2 693 2089 122 5 102 chr4 14215003 14215386 -141414734 + RLTR23 LTR ERV1 5 350 -80 2 693 795 318 50 24 chr4 14215396 14215796 -141414324 - LTR53 LTR ERVL -56 463 4 2 693 240 287 59 25 chr4 14216184 14216302 -141413818 - MIR SINE MIR -1 261 140 2 693 4031 148 21 33 chr4 14217985 14218685 -141411435 - RLTR17 LTR ERVK 0 692 1 2 693 6698 179 60 64 chr4 14218685 14219228 -141410892 - RMER3D-int LTR ERVK 0 2842 2298 2 693 1465 64 16 0 chr4 14219228 14219416 -141410704 + B2_Mm2 SINE B2 1 191 -4 2 693 6698 179 60 64 chr4 14219416 14220077 -141410043 - RMER3D-int LTR ERVK -545 2297 1613 2 693 2755 53 96 0 chr4 14220077 14220433 -141409687 + RLTR10 LTR ERVK 1 390 0 2 693 6698 179 60 64 chr4 14220433 14221061 -141409059 - RMER3D-int LTR ERVK -1230 1612 1015 2 693 292 193 57 40 chr4 14221272 14221377 -141408743 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 2 693 3319 45 0 2 chr4 14221377 14221774 -141408346 - MTA_Mm LTR MaLR 0 396 1 2 693 292 193 57 40 chr4 14221774 14221792 -141408328 + (TCTA)n Simple_repeat Simple_repeat 2 19 0 2 693 225 350 83 7 chr4 14222829 14222973 -141407147 + MIR SINE MIR 15 169 -93 2 693 204 317 0 68 chr4 14223426 14223514 -141406606 - MIRb SINE MIR -151 117 36 2 693 558 281 116 0 chr4 14224250 14224371 -141405749 - RSINE1 SINE B4 -20 145 11 2 693 315 0 0 0 chr4 14224409 14224444 -141405676 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 693 26 30 0 0 chr4 14226155 14226188 -141403932 + AT_rich Low_complexity Low_complexity 1 33 0 2 693 665 315 68 89 chr4 14227825 14228163 -141401957 + ORR1E LTR MaLR 19 349 -10 2 693 3023 66 5 8 chr4 14229118 14229515 -141400605 - MTA_Mm LTR MaLR 0 396 1 2 693 492 263 174 9 chr4 14229749 14229979 -141400141 + Lx8 LINE L1 6880 7147 -326 2 693 1092 102 7 0 chr4 14230279 14230426 -141399694 + B1_Mus1 SINE Alu 1 148 0 2 693 295 83 11 67 chr4 14230429 14230519 -141399601 + A-rich Low_complexity Low_complexity 2 86 0 2 693 351 0 0 0 chr4 14230519 14230558 -141399562 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 693 1557 307 36 16 chr4 14230561 14231432 -141398688 + Lx8 LINE L1 4208 5098 -782 2 693 34849 31 3 8 chr4 14231432 14236638 -141393482 + L1Md_A LINE L1 412 5586 -297 2 693 8466 31 1 0 chr4 14236638 14237632 -141392488 + L1Md_A LINE L1 5587 6581 -1 2 693 1317 296 55 52 chr4 14237633 14238883 -141391237 + Lx8 LINE L1 5061 6348 -1125 2 693 367 190 114 0 chr4 14238945 14239024 -141391096 + B1_Mus2 SINE Alu 54 141 -6 2 693 1248 77 0 0 chr4 14239033 14239202 -141390918 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 2 693 1430 29 0 0 chr4 14239202 14239375 -141390745 + L1Md_T LINE L1 5414 5586 -297 2 693 8108 52 0 0 chr4 14239375 14240371 -141389749 + L1Md_T LINE L1 5587 6582 0 2 693 619 12 0 24 chr4 14240375 14240457 -141389663 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 2 693 275 169 14 0 chr4 14240456 14240527 -141389593 + GA-rich Low_complexity Low_complexity 2 73 0 2 693 1731 282 82 8 chr4 14240561 14241148 -141388972 + Lx8 LINE L1 6414 7043 -430 2 693 1958 174 8 23 chr4 14241287 14241640 -141388480 + MTC LTR MaLR 63 410 -11 2 693 31864 66 12 0 chr4 14241775 14246941 -141383179 + L1Md_F3 LINE L1 358 5586 -297 2 693 7707 48 29 2 chr4 14246941 14247908 -141382212 + L1Md_F3 LINE L1 5587 6579 -5 2 693 10549 21 0 1 chr4 14247912 14249879 -141380241 - L1Md_A LINE L1 -5 6577 4613 2 693 248 335 101 53 chr4 14249879 14250087 -141380033 - MLT1L LTR MaLR -43 567 350 2 693 21 0 0 0 chr4 14250643 14250664 -141379456 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 364 241 8 77 chr4 14250886 14251003 -141379117 - MIR SINE MIR -54 208 100 2 693 582 220 34 47 chr4 14251257 14251405 -141378715 - B1_Mur1 SINE Alu -1 148 3 2 693 506 324 0 0 chr4 14251802 14251947 -141378173 + MER58B DNA MER1_type 192 336 -5 2 693 197 294 155 48 chr4 14253660 14253828 -141376292 + MIR SINE MIR 19 204 -58 2 693 582 176 0 0 chr4 14253840 14253959 -141376161 + (TA)n Simple_repeat Simple_repeat 2 120 0 2 693 825 299 55 70 chr4 14254454 14254781 -141375339 + ORR1E LTR MaLR 32 353 -6 2 693 22 56 0 0 chr4 14255018 14255054 -141375066 + AT_rich Low_complexity Low_complexity 1 36 0 2 693 531 0 0 0 chr4 14255397 14255456 -141374664 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 693 296 336 61 8 chr4 14255721 14255853 -141374267 - MLT1G1 LTR MaLR -440 139 1 2 693 505 326 79 46 chr4 14257987 14258228 -141371892 - MLT1F1 LTR MaLR -65 504 256 2 693 507 17 0 0 chr4 14258720 14258780 -141371340 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 693 372 43 0 0 chr4 14258780 14258825 -141371295 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 693 232 301 41 0 chr4 14260445 14260518 -141369602 + ID4 SINE ID 4 79 -4 2 693 360 0 0 0 chr4 14260633 14260673 -141369447 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 3 693 225 304 10 71 chr4 14260690 14260789 -141369331 + MLT1A1 LTR MaLR 4 96 -312 3 693 250 311 86 21 chr4 14260804 14260991 -141369129 + Lx8 LINE L1 6962 7160 -313 3 693 534 287 0 13 chr4 14261010 14261162 -141368958 + Lx6 LINE L1 7147 7296 -164 3 693 13921 169 67 31 chr4 14262914 14264011 -141366109 + Lx2B LINE L1 742 1902 -3984 3 693 5270 81 77 99 chr4 14264011 14264924 -141365196 - RLTR13B1 LTR ERVK 0 893 1 3 693 13921 164 25 38 chr4 14264924 14267325 -141362795 + Lx2B LINE L1 1903 4272 -1614 3 693 6678 60 8 0 chr4 14267325 14268202 -141361918 + L1_Mus2 LINE L1 5677 6560 -6 3 693 22 35 0 0 chr4 14268202 14268231 -141361889 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 8245 164 23 4 chr4 14268234 14270921 -141359199 + Lx2B LINE L1 4264 7000 0 3 693 293 218 98 18 chr4 14270925 14271037 -141359083 + L1M3b LINE L1 56 176 -6105 3 693 374 221 22 44 chr4 14271082 14271172 -141358948 + B1_Mus2 SINE Alu 60 147 0 3 693 250 111 0 0 chr4 14271178 14271214 -141358906 + URR1B DNA MER1_type 190 225 0 3 693 4283 122 40 7 chr4 14272192 14272875 -141357245 - Lx LINE L1 -9 6645 5941 3 693 1109 113 151 1 chr4 14272875 14273156 -141356964 - L1_Mus4 LINE L1 -401 6165 5783 3 693 13908 148 13 91 chr4 14273156 14277310 -141352810 - L1Md_F2 LINE L1 0 6582 2764 3 693 575 258 54 58 chr4 14277487 14277763 -141352357 + L1M2 LINE L1 4484 4758 -1382 3 693 704 282 52 12 chr4 14277840 14278242 -141351878 + L1M2 LINE L1 5024 5442 -858 3 693 638 314 94 15 chr4 14278422 14278993 -141351127 + L1MA7 LINE L1 5601 6220 -71 3 693 1787 203 18 1 chr4 14280321 14280774 -141349346 + Lx5 LINE L1 5500 5965 -1085 3 693 563 98 11 0 chr4 14281332 14281424 -141348696 + (TC)n Simple_repeat Simple_repeat 2 94 0 3 693 1853 139 54 0 chr4 14281443 14281760 -141348360 + L1_Mm LINE L1 4250 4583 -1300 3 693 2790 64 8 0 chr4 14281759 14282118 -141348002 - L1_Mm LINE L1 -73 5810 5449 3 693 1454 59 50 0 chr4 14282118 14282320 -141347800 + L1_Mus1 LINE L1 6356 6567 0 3 693 6657 138 8 23 chr4 14282331 14283083 -141347037 + L1_Mm LINE L1 4571 5307 -576 3 693 2718 73 3 16 chr4 14283083 14283459 -141346661 + L1Md_F2 LINE L1 6212 6582 0 3 693 6657 138 8 23 chr4 14283459 14283838 -141346282 + L1_Mm LINE L1 5308 5684 -199 3 693 7658 66 10 1 chr4 14283837 14284870 -141345250 - L1_Mus1 LINE L1 -1 6566 5525 3 693 6389 87 88 15 chr4 14284866 14285918 -141344202 + L1_Mus3 LINE L1 5383 6638 0 3 693 1103 66 47 12 chr4 14286089 14286258 -141343862 + L1_Mus3 LINE L1 6457 6631 -7 3 693 471 342 12 12 chr4 14286334 14286497 -141343623 + ID_B1 SINE B4 5 167 -57 3 694 5855 72 19 0 chr4 14287358 14288130 -141341990 - L1_Mus2 LINE L1 -2 6564 5778 3 694 243 0 0 0 chr4 14288238 14288265 -141341855 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 694 234 0 0 0 chr4 14288949 14288975 -141341145 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 694 277 297 54 0 chr4 14290333 14290407 -141339713 + MIRb SINE MIR 37 114 -154 3 694 181 321 18 0 chr4 14290978 14291034 -141339086 + MIRb SINE MIR 27 83 -185 3 694 21 0 0 0 chr4 14292781 14292802 -141337318 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 559 286 0 48 chr4 14293581 14293728 -141336392 + B1F SINE Alu 3 142 -7 3 694 2512 81 3 3 chr4 14294084 14294430 -141335690 - MTB LTR MaLR -54 346 1 3 694 6605 60 1 1 chr4 14294477 14295315 -141334805 - L1Md_F2 LINE L1 0 6582 5745 3 694 11163 57 1 0 chr4 14295315 14296708 -141333412 + L1Md_F2 LINE L1 4361 5754 -129 3 694 1614 247 11 210 chr4 14296942 14297705 -141332415 + RMER19C LTR ERVK 1 611 0 3 694 370 247 74 123 chr4 14298879 14299244 -141330876 - RLTR12B LTR ERVK -24 504 158 3 694 204 67 0 0 chr4 14299252 14299282 -141330838 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 694 333 197 0 0 chr4 14299532 14299603 -141330517 + GA-rich Low_complexity Low_complexity 4 74 0 3 694 451 15 61 0 chr4 14299947 14300013 -141330107 + (CAGA)n Simple_repeat Simple_repeat 2 71 0 3 694 3287 26 8 10 chr4 14301202 14301598 -141328522 - MTA_Mm LTR MaLR -1 395 1 3 694 181 333 76 8 chr4 14302067 14302185 -141327935 - MIRc SINE MIR -2 266 141 3 694 1129 70 0 0 chr4 14304305 14304448 -141325672 + B1_Mus2 SINE Alu 5 147 0 3 694 3343 37 0 133 chr4 14305035 14305538 -141324582 + RLTR10C LTR ERVK 1 436 0 3 694 408 125 0 0 chr4 14306063 14306127 -141323993 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 694 3097 45 42 0 chr4 14306207 14306587 -141323533 - MTA_Mm LTR MaLR 0 396 1 3 694 7207 92 8 69 chr4 14306587 14307757 -141322363 - MTA_Mm-int LTR MaLR 0 1098 1 3 694 3010 48 45 8 chr4 14307757 14308139 -141321981 - MTA_Mm LTR MaLR 0 396 1 3 694 456 340 27 13 chr4 14308266 14308415 -141321705 + B4 SINE B4 2 152 -140 3 694 393 314 6 6 chr4 14308416 14308573 -141321547 + L1M4 LINE L1 2169 2325 -3821 3 694 607 337 58 74 chr4 14310031 14310396 -141319724 - ORR1E LTR MaLR 0 359 1 3 694 256 291 0 0 chr4 14310396 14310432 -141319688 - MTEa-int LTR MaLR -53 1527 1492 3 694 471 35 0 0 chr4 14310434 14310491 -141319629 + (TTA)n Simple_repeat Simple_repeat 1 57 0 3 694 1036 274 60 13 chr4 14310494 14310808 -141319312 - Lx6 LINE L1 -33 7427 7099 3 694 3930 327 65 33 chr4 14310809 14312276 -141317844 - MTEa-int LTR MaLR -66 1514 1 3 694 652 376 18 63 chr4 14312276 14312659 -141317461 - MTEa LTR MaLR 0 379 14 3 694 215 309 23 23 chr4 14312833 14312919 -141317201 - L2 LINE L2 -498 2921 2836 3 694 878 116 0 7 chr4 14314699 14314847 -141315273 + (TC)n Simple_repeat Simple_repeat 2 148 0 3 694 315 0 0 0 chr4 14314847 14314881 -141315239 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 694 232 267 0 0 chr4 14314925 14314970 -141315150 - B3A SINE B2 -153 45 1 3 694 2915 208 23 13 chr4 14315072 14315766 -141314354 - Lx4B LINE L1 -83 6890 6211 3 694 255 339 86 24 chr4 14317404 14317742 -141312378 - L1MEf LINE L1 -4476 1724 1366 3 694 443 48 16 0 chr4 14318016 14318078 -141312042 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 694 826 199 99 0 chr4 14318309 14318490 -141311630 - RMER1B Other Other -3 1063 865 3 694 182 192 0 19 chr4 14318704 14318757 -141311363 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 694 1893 328 76 5 chr4 14318777 14319541 -141310579 + Lx8 LINE L1 6227 7044 -429 3 694 384 284 281 20 chr4 14319616 14319841 -141310279 - RMER21A LTR ERV1 -267 680 296 3 694 303 93 0 0 chr4 14319841 14319884 -141310236 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 3 694 381 284 281 20 chr4 14319884 14320007 -141310113 - RMER21A LTR ERV1 -547 295 125 3 694 482 333 121 24 chr4 14320093 14320425 -141309695 + Lx8 LINE L1 7105 7468 -5 3 694 680 313 27 32 chr4 14321437 14321685 -141308435 - L1MB8 LINE L1 -115 6236 5988 3 694 1656 56 5 0 chr4 14321685 14321898 -141308222 - L1Md_T LINE L1 0 6582 6369 3 694 680 313 27 32 chr4 14321898 14322022 -141308098 - L1MB8 LINE L1 -364 5987 5867 3 694 405 0 0 0 chr4 14323231 14323276 -141306844 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 694 399 160 0 0 chr4 14323536 14323611 -141306509 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 694 2642 309 83 5 chr4 14323658 14324655 -141305465 + Lx8 LINE L1 6216 7290 -183 3 694 255 121 52 0 chr4 14324655 14324713 -141305407 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 694 228 102 157 39 chr4 14324842 14324893 -141305227 + Lx8 LINE L1 7408 7464 -9 3 694 326 346 152 16 chr4 14325101 14325404 -141304716 - L1MB8 LINE L1 -1053 5266 4923 3 694 333 270 92 23 chr4 14325525 14325854 -141304266 - L1MB8 LINE L1 -3878 2441 2086 3 694 422 290 107 42 chr4 14325959 14326275 -141303845 - L1MB8 LINE L1 -4472 1928 1594 3 694 254 314 60 77 chr4 14326295 14326399 -141303721 - Tigger9a DNA Tigger -101 631 520 3 694 1995 69 0 4 chr4 14326399 14326662 -141303458 - L1_Mus1 LINE L1 -1 6566 6305 3 694 254 314 60 77 chr4 14326662 14326740 -141303380 - Tigger9a DNA Tigger -213 519 452 3 694 381 308 128 33 chr4 14327147 14327537 -141302583 - L1_Rod LINE L1 -2828 3019 2593 3 694 220 234 0 0 chr4 14327539 14327586 -141302534 + T-rich Low_complexity Low_complexity 1 47 0 3 694 411 299 59 46 chr4 14327738 14328041 -141302079 - L1MEe LINE L1 -3302 2578 2312 3 694 3382 35 2 0 chr4 14328042 14328437 -141301683 + MTA_Mm LTR MaLR 1 396 0 3 694 582 15 0 0 chr4 14328627 14328694 -141301426 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 694 1188 277 73 13 chr4 14328945 14329326 -141300794 + Lx8 LINE L1 6922 7325 -148 3 694 195 42 0 0 chr4 14329701 14329725 -141300395 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 694 450 53 0 0 chr4 14330037 14330094 -141300026 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 694 696 311 60 31 chr4 14330218 14330523 -141299597 - Lx8 LINE L1 -254 7219 6919 3 694 1186 330 25 14 chr4 14330535 14330977 -141299143 + Lx8 LINE L1 6425 6871 -602 3 694 2554 173 24 61 chr4 14330982 14331500 -141298620 - RMER19C LTR ERVK 0 611 16 3 694 297 0 0 0 chr4 14331500 14331533 -141298587 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 694 363 132 130 14 chr4 14331533 14331548 -141298572 - RMER19C LTR ERVK -596 15 1 3 694 522 335 62 20 chr4 14331590 14331785 -141298335 + Tigger5 DNA MER2_type 40 242 -2164 3 694 1349 96 37 0 chr4 14331816 14332004 -141298116 - B2_Mm2 SINE B2 0 195 1 3 694 225 0 0 0 chr4 14332231 14332256 -141297864 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 694 989 119 6 57 chr4 14332269 14332490 -141297630 - ORR1A2 LTR MaLR 0 367 174 3 694 2569 183 17 12 chr4 14332422 14332904 -141297216 + RLTR17 LTR ERVK 209 692 0 3 694 1227 118 19 93 chr4 14332904 14333112 -141297008 - ORR1A2 LTR MaLR -122 205 14 3 694 24 0 0 0 chr4 14333117 14333141 -141296979 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 207 0 0 0 chr4 14333681 14333704 -141296416 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 694 22000 102 15 3 chr4 14334330 14338521 -141291599 + L1_Mus1 LINE L1 2327 6565 -2 3 694 4614 149 51 8 chr4 14342621 14343390 -141286730 + RMER21B LTR ERV1 41 842 0 3 694 2851 146 19 15 chr4 14343443 14343965 -141286155 - RLTR28 LTR ERVL 0 524 1 3 694 383 344 32 19 chr4 14345352 14345509 -141284611 - RSINE1 SINE B4 -3 162 4 3 694 2316 88 0 0 chr4 14345674 14345980 -141284140 - L1_Mus2 LINE L1 -1 6565 6260 3 694 336 314 199 20 chr4 14346268 14346493 -141283627 + MLT1E LTR MaLR 358 649 -4 3 694 344 292 17 17 chr4 14346527 14346642 -141283478 + L2a LINE L2 3307 3421 -5 3 694 214 351 32 11 chr4 14348272 14348367 -141281753 - MIR3 SINE MIR -7 201 105 3 694 207 0 0 0 chr4 14349711 14349734 -141280386 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 694 243 0 0 0 chr4 14349991 14350018 -141280102 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 694 345 47 0 0 chr4 14350539 14350582 -141279538 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 694 489 47 0 0 chr4 14350860 14350924 -141279196 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 694 245 239 40 40 chr4 14351141 14351215 -141278905 - MIRb SINE MIR -71 197 124 4 694 35601 24 0 7 chr4 14351216 14356203 -141273917 + L1Md_T LINE L1 643 5586 -297 4 694 8447 33 0 0 chr4 14356203 14357198 -141272922 + L1Md_T LINE L1 5587 6581 -1 4 694 956 269 192 17 chr4 14357301 14357326 -141272794 - MTD LTR MaLR -13 406 382 4 694 378 0 0 0 chr4 14357326 14357368 -141272752 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 694 956 269 192 17 chr4 14357368 14357686 -141272434 - MTD LTR MaLR -38 381 5 4 694 205 167 0 0 chr4 14358474 14358510 -141271610 + (CTAAA)n Simple_repeat Simple_repeat 5 40 0 4 694 1064 100 0 6 chr4 14361629 14361790 -141268330 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 4 694 607 332 28 100 chr4 14361900 14362291 -141267829 + MLT1A0 LTR MaLR 3 365 0 4 694 579 269 20 51 chr4 14363844 14364040 -141266080 + MIR SINE MIR 57 246 -16 4 694 381 323 33 82 chr4 14364313 14364495 -141265625 + LTR88b LTR Gypsy? 12 184 -653 4 694 338 39 39 0 chr4 14364783 14364834 -141265286 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 4 694 221 368 139 19 chr4 14365288 14365446 -141264674 - L3 LINE CR1 -1 4488 4312 4 694 309 263 100 10 chr4 14366216 14366316 -141263804 + MLT1A1 LTR MaLR 1 109 -299 4 694 360 239 73 9 chr4 14366406 14366516 -141263604 + MLT1A1 LTR MaLR 288 404 -4 4 694 645 274 23 46 chr4 14367035 14367253 -141262867 + B3 SINE B2 1 213 -3 4 694 358 212 10 10 chr4 14367697 14367797 -141262323 + CT-rich Low_complexity Low_complexity 2 101 0 4 694 191 36 0 35 chr4 14369695 14369724 -141260396 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 694 528 137 0 0 chr4 14369730 14369832 -141260288 + (CTA)n Simple_repeat Simple_repeat 2 103 0 4 694 989 243 122 11 chr4 14372384 14372663 -141257457 + MER2 DNA MER2_type 1 310 -35 4 694 376 265 32 15 chr4 14373501 14373620 -141256500 + B1_Mm SINE Alu 1 123 -4 4 694 526 232 13 26 chr4 14373743 14373789 -141256331 + L1_Mus4 LINE L1 5926 5969 -667 4 694 3905 51 4 14 chr4 14373789 14374284 -141255836 - L1Md_F3 LINE L1 -2 6582 6093 4 694 919 9 0 0 chr4 14374284 14374392 -141255728 + L1Md_F3 LINE L1 5977 6084 -500 4 694 466 178 205 71 chr4 14374704 14374831 -141255289 + B3A SINE B2 5 148 -50 4 694 348 24 0 0 chr4 14374833 14374874 -141255246 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 694 342 0 0 0 chr4 14374874 14374911 -141255209 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 694 7363 36 0 0 chr4 14375150 14376064 -141254056 - L1Md_A LINE L1 -2 6580 5667 4 694 324 70 0 0 chr4 14376937 14376980 -141253140 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 694 387 0 0 0 chr4 14376980 14377023 -141253097 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 694 1528 38 11 5 chr4 14377976 14378163 -141251957 + B2_Mm1t SINE B2 2 189 -4 4 694 531 0 0 0 chr4 14378724 14378783 -141251337 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 694 366 260 0 0 chr4 14379020 14379174 -141250946 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 694 427 86 0 0 chr4 14379439 14379497 -141250623 - L1_Mus1 LINE L1 -120 6518 6461 4 694 245 78 36 89 chr4 14379473 14379529 -141250591 + L1_Mus1 LINE L1 6506 6558 -9 4 694 187 378 14 0 chr4 14380510 14380584 -141249536 - L2 LINE L2 -462 2957 2883 4 694 414 57 0 0 chr4 14381550 14381603 -141248517 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 694 402 318 67 11 chr4 14383656 14383926 -141246194 + L1MB8 LINE L1 5663 5947 -231 4 694 687 257 57 6 chr4 14384640 14384816 -141245304 + B4 SINE B4 5 189 -103 4 694 243 310 0 0 chr4 14384926 14384984 -141245136 + Lx8 LINE L1 7137 7194 -279 4 694 746 297 52 47 chr4 14384984 14385408 -141244712 + L1MB3 LINE L1 5743 6168 -15 4 694 792 286 112 18 chr4 14385588 14385919 -141244201 - MLT1B LTR MaLR 0 390 29 4 694 346 318 100 0 chr4 14386597 14386707 -141243413 + RSINE1 SINE B4 4 124 -41 4 694 315 0 0 0 chr4 14386707 14386742 -141243378 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 694 318 50 0 0 chr4 14386797 14386837 -141243283 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 694 840 93 7 21 chr4 14387364 14387507 -141242613 + (TTTC)n Simple_repeat Simple_repeat 3 143 0 4 694 555 232 21 48 chr4 14387519 14387664 -141242456 - B1_Mur3 SINE Alu -2 147 7 4 694 1494 160 191 0 chr4 14387915 14388208 -141241912 + MTC LTR MaLR 9 357 -64 4 694 2705 199 30 2 chr4 14389879 14390443 -141239677 - Lx5 LINE L1 -257 6793 6214 4 694 350 159 0 14 chr4 14390663 14390733 -141239387 + T-rich Low_complexity Low_complexity 2 70 0 4 694 6615 101 19 13 chr4 14390742 14392116 -141238004 - L1_Mus3 LINE L1 -16 6622 5242 4 694 5127 113 17 13 chr4 14392104 14392973 -141237147 - L1_Mus3 LINE L1 -1446 4437 3571 4 694 216 0 0 0 chr4 14393310 14393334 -141236786 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 694 676 310 132 35 chr4 14393826 14394445 -141235675 + Arthur1 DNA Tip100 3177 3855 -92 4 694 200 274 260 19 chr4 14394999 14395103 -141235017 + MIRc SINE MIR 26 154 -114 4 694 930 314 42 14 chr4 14397963 14398247 -141231873 - B4A SINE B4 0 292 1 4 694 216 0 0 0 chr4 14398257 14398281 -141231839 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 694 1675 225 28 0 chr4 14398353 14398713 -141231407 + ORR1D1 LTR MaLR 5 374 0 4 694 197 235 19 19 chr4 14398902 14398954 -141231166 + MIRm SINE MIR 222 273 -3 4 694 245 286 13 25 chr4 14399065 14399144 -141230976 + B3A SINE B2 115 192 -6 4 694 206 293 0 17 chr4 14400410 14400469 -141229651 + (CATG)n Simple_repeat Simple_repeat 1 58 0 4 694 332 169 17 0 chr4 14400473 14400532 -141229588 + RMER15 LTR ERVL 1 60 -515 4 694 1361 238 199 17 chr4 14400555 14400973 -141229147 + RMER15 LTR ERVL 27 520 -55 4 694 513 0 0 0 chr4 14401006 14401063 -141229057 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 694 189 250 20 89 chr4 14401068 14401169 -141228951 - L2 LINE L2 -748 2671 2578 4 694 231 330 78 26 chr4 14401373 14401488 -141228632 - L2a LINE L2 -2 3424 3304 4 694 226 323 103 22 chr4 14402278 14402414 -141227706 + MLT1H-int LTR MaLR 297 443 -966 4 694 918 338 98 37 chr4 14402481 14403043 -141227077 + MLT1H-int LTR MaLR 524 1119 -290 4 694 433 313 87 32 chr4 14403043 14403329 -141226791 - L1MC3 LINE L1 -17 7768 7466 4 694 186 43 0 0 chr4 14403329 14403352 -141226768 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 694 433 313 87 32 chr4 14403352 14403375 -141226745 - L1MC3 LINE L1 -320 7465 7443 4 694 1165 62 0 7 chr4 14403580 14403726 -141226394 + B1_Mm SINE Alu 3 147 0 4 694 512 175 8 23 chr4 14403726 14403855 -141226265 + A-rich Low_complexity Low_complexity 3 129 0 4 694 367 253 55 21 chr4 14404122 14404221 -141225899 + 7SLRNA srpRNA srpRNA 1 90 -224 4 694 332 152 0 15 chr4 14405358 14405425 -141224695 + GA-rich Low_complexity Low_complexity 2 67 0 4 694 372 123 0 0 chr4 14405533 14405606 -141224514 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 694 309 100 15 118 chr4 14405624 14405692 -141224428 - HAL1-3A_ME LINE L1 -824 2034 1974 4 694 212 143 18 0 chr4 14405790 14405846 -141224274 + GA-rich Low_complexity Low_complexity 2 58 0 4 694 5121 122 61 28 chr4 14405954 14406903 -141223217 + L1VL4 LINE L1 20 999 -2560 4 694 1162 75 0 0 chr4 14406903 14407050 -141223070 + B1_Mus2 SINE Alu 1 147 0 4 694 4019 68 38 61 chr4 14407050 14407588 -141222532 + L1VL4 LINE L1 1000 1534 -2025 4 694 8782 179 136 1 chr4 14407583 14409666 -141220454 + L1_Mm LINE L1 2384 4746 -1137 4 694 413 264 6 69 chr4 14409681 14409770 -141220350 + L1VL1 LINE L1 237 319 -6103 4 694 2508 109 75 52 chr4 14409770 14410234 -141219886 + IAPLTR2_Mm LTR ERVK 1 475 0 4 694 413 264 6 69 chr4 14410234 14410319 -141219801 + L1VL1 LINE L1 320 400 -6022 4 694 24801 103 17 3 chr4 14410321 14412557 -141217563 + L1_Mus1 LINE L1 1942 4186 -1697 4 694 315 0 0 0 chr4 14412557 14412592 -141217528 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 694 198 0 0 0 chr4 14412592 14412613 -141217507 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 694 24801 97 16 7 chr4 14412613 14414369 -141215751 + L1_Mus1 LINE L1 4187 5987 -580 4 694 2258 134 81 20 chr4 14414369 14414765 -141215355 + RLTR9B2 LTR ERVK 1 420 0 4 694 6947 74 14 19 chr4 14414765 14415351 -141214769 + L1_Mus1 LINE L1 5988 6653 -1 4 694 6357 146 6 24 chr4 14415370 14417312 -141212808 + Lx LINE L1 4732 6649 -5 4 694 460 285 93 98 chr4 14417322 14417505 -141212615 + B3 SINE B2 27 208 -8 4 695 186 43 0 0 chr4 14419086 14419109 -141211011 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 695 2715 61 0 20 chr4 14420121 14420472 -141209648 + ORR1A1 LTR MaLR 1 344 -2 4 695 270 125 0 0 chr4 14420753 14420801 -141209319 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 4 695 4211 44 0 8 chr4 14420848 14421396 -141208724 + RLTR13C2 LTR ERVK 1 818 -215 4 695 7781 33 0 0 chr4 14421396 14422456 -141207664 - L1Md_T LINE L1 -38 6544 5485 4 695 1932 93 76 0 chr4 14422456 14422747 -141207373 + RLTR13C2 LTR ERVK 496 808 0 4 695 4834 53 2 2 chr4 14423007 14423594 -141206526 + LTRIS_Mus LTR ERV1 1 587 0 4 695 282 354 0 0 chr4 14423702 14423781 -141206339 - RMER15 LTR ERVL -105 470 392 4 695 2626 139 9 2 chr4 14423847 14424301 -141205819 - Lx2 LINE L1 -716 6281 5825 4 695 1990 100 3 24 chr4 14424297 14424595 -141205525 + Lx2 LINE L1 6352 6643 -354 4 695 1390 143 0 0 chr4 14424595 14424812 -141205308 + Lx2 LINE L1 6775 6991 -6 4 695 267 236 0 35 chr4 14424916 14424973 -141205147 - RMER21B LTR ERV1 -110 837 783 4 695 524 277 216 10 chr4 14425042 14425234 -141204886 - RMER21B LTR ERV1 -275 567 334 4 695 432 270 85 31 chr4 14425234 14425364 -141204756 - RMER10B LTR ERVL 0 398 262 4 695 387 172 59 26 chr4 14425591 14425685 -141204435 - RMER21A LTR ERV1 -483 464 299 4 695 426 313 84 17 chr4 14425833 14426012 -141204108 + MLT1A LTR MaLR 180 370 -4 4 695 871 294 104 76 chr4 14426014 14426525 -141203595 + MLT1A-int LTR MaLR 1 525 -846 4 695 678 171 0 0 chr4 14426525 14426756 -141203364 + (TG)n Simple_repeat Simple_repeat 1 231 0 4 695 549 6 133 0 chr4 14427345 14427503 -141202617 + (CCTG)n Simple_repeat Simple_repeat 2 180 0 4 695 207 0 0 0 chr4 14427549 14427572 -141202548 + (A)n Simple_repeat Simple_repeat 1 23 0 4 695 303 394 13 60 chr4 14428102 14428253 -141201867 + MLT-int LTR MaLR 1240 1383 -352 4 695 405 290 18 27 chr4 14428258 14428368 -141201752 + RSINE1 SINE B4 3 111 -54 4 695 881 82 69 0 chr4 14428381 14428540 -141201580 + CT-rich Low_complexity Low_complexity 3 172 0 5 695 414 0 0 0 chr4 14428548 14428594 -141201526 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 695 378 351 48 32 chr4 14428710 14428992 -141201128 + MLT-int LTR MaLR 1109 1621 -114 4 695 217 0 61 0 chr4 14429332 14429365 -141200755 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 695 225 100 60 0 chr4 14431588 14431638 -141198482 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 5 695 216 0 0 0 chr4 14435018 14435042 -141195078 + (TATG)n Simple_repeat Simple_repeat 4 27 0 5 695 463 344 12 71 chr4 14435062 14435231 -141194889 - RSINE1 SINE B4 -4 161 3 5 695 402 286 157 61 chr4 14435399 14435660 -141194460 + B4A SINE B4 2 287 -5 5 695 635 204 19 0 chr4 14435725 14435887 -141194233 + GA-rich Low_complexity Low_complexity 2 166 0 5 695 788 144 218 0 chr4 14438429 14438617 -141191503 - Lx9 LINE L1 -2 7642 7414 5 695 21 36 0 0 chr4 14438731 14438759 -141191361 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 864 251 211 44 chr4 14440260 14440643 -141189477 + MLT1D LTR MaLR 59 505 0 5 695 690 198 8 0 chr4 14441103 14441229 -141188891 - B1_Mus1 SINE Alu -20 128 2 5 695 349 271 0 86 chr4 14441127 14441244 -141188876 - MT2B LTR ERVL -344 257 151 5 695 608 289 16 11 chr4 14442034 14442216 -141187904 + B3A SINE B2 1 183 -15 5 695 392 307 12 18 chr4 14442989 14443158 -141186962 + GA-rich Low_complexity Low_complexity 2 169 0 5 695 1140 265 124 7 chr4 14444245 14444690 -141185430 + L1MC3 LINE L1 7060 7556 -229 5 695 570 98 0 0 chr4 14444702 14444784 -141185336 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 5 695 24 53 0 0 chr4 14444921 14444959 -141185161 + AT_rich Low_complexity Low_complexity 1 38 0 5 695 257 263 104 12 chr4 14445868 14445960 -141184160 - MIR SINE MIR -106 156 58 5 695 193 209 15 15 chr4 14446162 14446230 -141183890 + GA-rich Low_complexity Low_complexity 3 70 0 5 695 237 169 0 0 chr4 14446725 14446784 -141183336 + A-rich Low_complexity Low_complexity 1 59 0 5 695 294 219 50 4 chr4 14447078 14447151 -141182969 - ID4 SINE ID 0 83 6 5 695 23 33 0 0 chr4 14447684 14447714 -141182406 + AT_rich Low_complexity Low_complexity 1 30 0 5 695 216 0 0 0 chr4 14448783 14448807 -141181313 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 695 776 158 0 29 chr4 14448947 14449084 -141181036 + B1_Mur3 SINE Alu 17 149 0 5 695 196 256 0 23 chr4 14449092 14449180 -141180940 + GA-rich Low_complexity Low_complexity 3 88 0 5 695 200 185 19 0 chr4 14450418 14450472 -141179648 + GA-rich Low_complexity Low_complexity 2 56 0 5 695 325 208 39 13 chr4 14450903 14450981 -141179139 + L1M5 LINE L1 5692 5771 -408 5 695 296 364 25 8 chr4 14451174 14451296 -141178824 + ORR1E LTR MaLR 19 142 -217 5 695 24 0 0 0 chr4 14451434 14451458 -141178662 + AT_rich Low_complexity Low_complexity 1 24 0 5 695 225 0 0 0 chr4 14451564 14451589 -141178531 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 695 561 307 8 0 chr4 14451907 14452034 -141178086 - RSINE1 SINE B4 -35 130 3 5 695 27 0 0 0 chr4 14452700 14452727 -141177393 + AT_rich Low_complexity Low_complexity 1 27 0 5 695 700 332 57 37 chr4 14452963 14453420 -141176700 + Lx8 LINE L1 6942 7407 -66 5 695 22 0 0 0 chr4 14454142 14454164 -141175956 + AT_rich Low_complexity Low_complexity 1 22 0 5 695 2715 278 22 53 chr4 14454416 14454725 -141175395 - Lx9 LINE L1 -356 7288 6997 5 695 842 91 218 13 chr4 14454725 14454881 -141175239 - B2_Mm2 SINE B2 -7 188 1 5 695 2715 278 22 53 chr4 14454881 14455521 -141174599 - Lx9 LINE L1 -648 6996 6368 5 695 887 196 65 35 chr4 14456481 14456682 -141173438 + B3 SINE B2 4 210 -6 5 695 3916 138 73 3 chr4 14456724 14457371 -141172749 + RLTR17 LTR ERVK 1 692 0 5 695 637 265 14 14 chr4 14457553 14457691 -141172429 - RSINE1 SINE B4 -25 140 3 5 695 288 335 135 35 chr4 14458558 14458787 -141171333 - MTEb LTR MaLR -20 359 108 5 695 21 0 0 0 chr4 14462165 14462186 -141167934 + GC_rich Low_complexity Low_complexity 1 21 0 5 695 683 280 44 20 chr4 14462712 14462916 -141167204 - B3 SINE B2 -6 210 2 5 695 185 94 31 0 chr4 14464100 14464132 -141165988 + (GGA)n Simple_repeat Simple_repeat 1 33 0 5 695 7602 73 4 14 chr4 14464204 14465979 -141164141 + L1_Mus2 LINE L1 4809 6566 0 5 695 499 270 126 24 chr4 14466555 14466802 -141163318 + MER33 DNA MER1_type 52 323 -1 5 695 31 26 0 0 chr4 14466866 14466904 -141163216 + AT_rich Low_complexity Low_complexity 1 38 0 5 695 659 253 29 69 chr4 14467338 14467542 -141162578 + B3A SINE B2 1 196 -2 5 695 1414 126 9 9 chr4 14469340 14469565 -141160555 + URR1B DNA MER1_type 1 225 0 5 695 2728 186 41 19 chr4 14469917 14470449 -141159671 + RMER15 LTR ERVL 32 575 0 5 695 1083 75 0 0 chr4 14470834 14470980 -141159140 + (GA)n Simple_repeat Simple_repeat 2 147 0 5 695 478 298 244 0 chr4 14471779 14472074 -141158046 + L2a LINE L2 2066 2432 -987 5 695 3353 43 2 2 chr4 14472089 14472489 -141157631 + MTB LTR MaLR 1 400 0 5 695 206 317 0 32 chr4 14472687 14472749 -141157371 + L2a LINE L2 3331 3390 -36 5 695 482 268 71 0 chr4 14473109 14473221 -141156899 + RSINE1 SINE B4 3 122 -43 5 695 331 317 52 10 chr4 14475772 14475883 -141154237 + B1F SINE Alu 1 115 -5 5 695 285 326 21 7 chr4 14476026 14476171 -141153949 + L1MA5 LINE L1 6111 6257 -43 5 695 368 71 18 0 chr4 14476364 14476420 -141153700 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 695 216 158 0 0 chr4 14476743 14476781 -141153339 + CT-rich Low_complexity Low_complexity 3 40 0 5 695 465 339 110 23 chr4 14476839 14477102 -141153018 - B4A SINE B4 -6 286 1 5 695 380 418 49 35 chr4 14478002 14478228 -141151892 + MER115 DNA Tip100 1 229 -464 5 695 180 0 0 0 chr4 14480030 14480050 -141150070 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 695 762 269 57 22 chr4 14480461 14480689 -141149431 + B4A SINE B4 55 290 -2 5 695 931 249 9 9 chr4 14481570 14481781 -141148339 + B3 SINE B2 1 211 -5 5 695 216 0 0 0 chr4 14481815 14481839 -141148281 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 695 422 206 52 144 chr4 14482550 14482578 -141147542 + ID SINE ID 65 78 -146 5 695 792 185 0 8 chr4 14482578 14482709 -141147411 + B1_Mus1 SINE Alu 2 131 -17 5 695 234 62 0 0 chr4 14482714 14482746 -141147374 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 695 28 0 0 0 chr4 14483346 14483374 -141146746 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 2607 197 74 13 chr4 14486828 14487434 -141142686 - Lx3C LINE L1 -747 6229 5587 5 695 3122 185 90 6 chr4 14487440 14488143 -141141977 + Lx2B LINE L1 6238 6999 -1 5 695 414 0 0 0 chr4 14488403 14488449 -141141671 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 695 885 227 70 50 chr4 14488477 14488772 -141141348 + MT2A LTR ERVL 130 563 -38 5 695 469 289 0 34 chr4 14489666 14489784 -141140336 - B1F SINE Alu -23 126 13 5 695 1090 44 0 14 chr4 14491232 14491370 -141138750 + B1_Mus1 SINE Alu 11 146 -2 5 695 540 330 53 25 chr4 14491420 14491703 -141138417 + B4A SINE B4 2 292 0 5 695 1006 132 30 81 chr4 14494876 14495074 -141135046 - B2_Mm2 SINE B2 -6 189 2 5 695 959 93 50 0 chr4 14495105 14495245 -141134875 - B2_Mm2 SINE B2 -47 148 2 5 695 300 354 16 48 chr4 14495654 14495751 -141134369 - L1MD3 LINE L1 -1980 6015 5923 5 695 919 148 0 45 chr4 14495751 14495907 -141134213 + B1_Mur4 SINE Alu 2 150 0 5 695 300 354 16 48 chr4 14495907 14495996 -141134124 - L1MD3 LINE L1 -2073 5922 5835 5 695 227 103 26 0 chr4 14496058 14496097 -141134023 + (GGA)n Simple_repeat Simple_repeat 2 41 0 5 695 21 36 0 0 chr4 14497015 14497043 -141133077 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 250 263 120 0 chr4 14497386 14497519 -141132601 + L1MC3 LINE L1 5913 6061 -1934 5 695 1026 332 45 20 chr4 14497587 14498184 -141131936 + Lx9 LINE L1 6744 7355 -289 5 695 310 291 61 37 chr4 14498251 14498465 -141131655 + L1MC3 LINE L1 7516 7734 -51 5 695 284 142 330 2 chr4 14498850 14498964 -141131156 + L1MC3 LINE L1 6895 7065 -930 5 695 329 225 8 24 chr4 14499185 14499234 -141130886 + polypurine Low_complexity Low_complexity 1 49 0 5 695 671 243 29 0 chr4 14499234 14499374 -141130746 + B1_Mur4 SINE Alu 1 144 -6 5 695 329 225 8 24 chr4 14499374 14499447 -141130673 + GA-rich Low_complexity Low_complexity 50 121 0 5 695 231 178 0 43 chr4 14499472 14499519 -141130601 + GA-rich Low_complexity Low_complexity 3 47 0 5 695 886 55 31 0 chr4 14499519 14499646 -141130474 + (GAGAA)n Simple_repeat Simple_repeat 5 135 0 5 695 485 214 62 0 chr4 14501185 14501297 -141128823 + PB1D9 SINE Alu 1 119 -1 1 695 212 131 0 21 chr4 14501298 14501345 -141128775 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2 695 339 241 165 61 chr4 14501443 14501507 -141128613 + B4 SINE B4 11 86 -206 3 695 265 229 49 0 chr4 14501507 14501568 -141128552 + B1F2 SINE Alu 1 64 -85 4 695 182 143 0 20 chr4 14502236 14502286 -141127834 + (TAA)n Simple_repeat Simple_repeat 1 49 0 5 695 416 313 157 15 chr4 14502341 14502545 -141127575 + B4A SINE B4 1 233 -59 6 695 666 352 70 0 chr4 14502611 14502867 -141127253 + B4A SINE B4 6 279 -13 7 695 256 263 67 17 chr4 14503197 14503317 -141126803 + L1MA10 LINE L1 6195 6320 -14 8 695 792 190 28 0 chr4 14503581 14503723 -141126397 + ORR1C2 LTR MaLR 239 384 0 9 695 2051 238 148 35 chr4 14503725 14504716 -141125404 + ORR1C2-int LTR MaLR 96 1202 -168 9 695 311 23 0 44 chr4 14504716 14504761 -141125359 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 695 2051 222 176 31 chr4 14504761 14504910 -141125210 + ORR1C2-int LTR MaLR 1203 1370 0 9 695 1382 222 67 41 chr4 14504910 14505276 -141124844 + ORR1C2 LTR MaLR 1 411 -8 9 695 769 277 13 41 chr4 14505281 14505680 -141124440 + L1MA5A LINE L1 4284 4699 -1444 1 695 544 317 45 22 chr4 14505672 14506117 -141124003 + L1MA5A LINE L1 4938 5392 -751 1 695 530 281 148 35 chr4 14506128 14506272 -141123848 + L1MA5A LINE L1 5448 5589 -708 1 695 306 0 0 0 chr4 14506272 14506306 -141123814 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 695 530 266 103 44 chr4 14506306 14506588 -141123532 + L1MA5A LINE L1 5590 5898 -399 1 695 396 0 0 0 chr4 14506764 14506808 -141123312 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 695 344 270 88 53 chr4 14506880 14507107 -141123013 + L1M2 LINE L1 4301 4535 -1608 1 695 459 35 0 0 chr4 14507935 14507992 -141122128 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 1 695 253 311 14 0 chr4 14507993 14508067 -141122053 + GA-rich Low_complexity Low_complexity 3 77 0 1 695 35407 26 1 7 chr4 14509559 14514736 -141115384 + L1Md_A LINE L1 449 5585 -298 1 695 8332 35 6 0 chr4 14514737 14515754 -141114366 + L1Md_A LINE L1 5587 6582 0 1 695 1605 45 0 0 chr4 14515754 14515962 -141114158 + L1Md_A LINE L1 6381 6582 0 1 695 251 328 24 57 chr4 14516250 14516418 -141113702 + MTE2a LTR MaLR 195 353 -26 1 695 202 337 108 10 chr4 14516716 14516818 -141113302 - L3 LINE CR1 -67 4422 4311 2 695 576 304 78 0 chr4 14516843 14516874 -141113246 - B3 SINE B2 -9 207 177 2 695 420 55 0 0 chr4 14516874 14516929 -141113191 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 695 576 304 78 0 chr4 14516929 14517088 -141113032 - B3 SINE B2 -40 176 3 2 695 31 58 0 0 chr4 14517099 14517151 -141112969 + AT_rich Low_complexity Low_complexity 1 52 0 2 695 335 347 76 12 chr4 14519998 14520170 -141109950 + MLT1D LTR MaLR 323 505 0 2 695 2801 65 3 19 chr4 14522620 14522998 -141107122 - L1_Mus1 LINE L1 0 6567 6196 2 695 672 289 26 26 chr4 14523200 14523392 -141106728 + B3A SINE B2 2 193 -5 2 695 23 0 0 0 chr4 14523393 14523416 -141106704 + AT_rich Low_complexity Low_complexity 1 23 0 2 695 22 0 0 0 chr4 14523745 14523767 -141106353 + AT_rich Low_complexity Low_complexity 1 22 0 2 695 771 11 0 0 chr4 14524263 14524351 -141105769 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 2 695 239 210 69 10 chr4 14524540 14524641 -141105479 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 3 695 477 0 0 0 chr4 14525094 14525147 -141104973 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 695 998 303 109 35 chr4 14525408 14525839 -141104281 + MLT1C LTR MaLR 5 467 0 3 695 462 114 0 0 chr4 14526754 14526824 -141103296 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 3 695 325 246 58 0 chr4 14527458 14527527 -141102593 - B4 SINE B4 -212 80 8 3 695 234 116 0 0 chr4 14527529 14527572 -141102548 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 3 695 527 278 11 0 chr4 14527572 14527693 -141102427 - B1_Mur2 SINE Alu -10 139 9 3 695 615 50 0 0 chr4 14529222 14529302 -141100818 - L1_Mus2 LINE L1 -123 6443 6364 3 695 711 122 13 26 chr4 14529302 14529573 -141100547 + L1_Mus3 LINE L1 6489 6638 0 3 695 1220 89 0 11 chr4 14529577 14529758 -141100362 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 695 181 82 0 109 chr4 14530277 14530332 -141099788 + T-rich Low_complexity Low_complexity 2 50 0 4 695 4891 59 29 32 chr4 14530351 14531014 -141099106 - L1_Mus2 LINE L1 -2 6564 5904 4 695 468 0 0 0 chr4 14531265 14531317 -141098803 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 4 695 329 294 9 121 chr4 14531501 14531617 -141098503 + B4A SINE B4 187 289 -3 4 695 368 40 0 20 chr4 14531617 14531668 -141098452 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 695 600 278 74 5 chr4 14531704 14531886 -141098234 + B3A SINE B2 1 189 -27 4 695 1167 114 270 4 chr4 14532008 14532259 -141097861 + L1_Mus1 LINE L1 6263 6582 0 4 695 466 288 61 18 chr4 14532319 14532482 -141097638 - Arthur1B DNA Tip100 -960 265 96 4 695 558 262 257 5 chr4 14533383 14533605 -141096515 - B4A SINE B4 -10 282 5 4 695 1199 256 109 91 chr4 14534367 14534892 -141095228 - RMER5 LTR ERV1 0 534 1 4 695 672 129 0 0 chr4 14536267 14536391 -141093729 + (CTCTG)n Simple_repeat Simple_repeat 3 126 0 5 695 338 0 0 23 chr4 14536391 14536434 -141093686 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 695 906 107 61 0 chr4 14536434 14536565 -141093555 - B1_Mus1 SINE Alu -9 139 1 5 695 315 0 0 0 chr4 14537023 14537058 -141093062 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 695 214 245 0 0 chr4 14537760 14537809 -141092311 + GA-rich Low_complexity Low_complexity 2 50 0 5 695 542 28 28 0 chr4 14537818 14537889 -141092231 + (GGGGA)n Simple_repeat Simple_repeat 5 77 0 5 695 5083 76 32 9 chr4 14539503 14539827 -141090293 + Lx3_Mus LINE L1 6317 6640 -369 5 695 3204 63 2 2 chr4 14539827 14540223 -141089897 + MTA_Mm LTR MaLR 1 396 0 5 695 5083 76 32 9 chr4 14540223 14540575 -141089545 + Lx3_Mus LINE L1 6641 7009 0 5 695 316 88 0 34 chr4 14540625 14540684 -141089436 + (GGA)n Simple_repeat Simple_repeat 2 58 0 5 695 7460 97 23 19 chr4 14540964 14542103 -141088017 + Lx3A LINE L1 5836 6978 -3 5 695 7150 87 4 36 chr4 14542124 14542509 -141087611 + L1_Mus4 LINE L1 5587 5964 -672 6 695 992 111 0 0 chr4 14542509 14542644 -141087476 + B1_Mus2 SINE Alu 2 136 -11 6 695 7150 87 4 36 chr4 14542644 14543343 -141086777 + L1_Mus4 LINE L1 5965 6636 0 6 695 204 229 0 20 chr4 14543572 14543584 -141086536 + polypurine Low_complexity Low_complexity 2 13 0 6 695 677 45 0 11 chr4 14543584 14543674 -141086446 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 6 695 204 229 0 20 chr4 14543674 14543710 -141086410 + polypurine Low_complexity Low_complexity 14 49 0 6 695 202 287 122 41 chr4 14544038 14544136 -141085984 - MIRm SINE MIR -14 262 157 6 695 292 295 69 36 chr4 14545147 14545273 -141084847 + MIR SINE MIR 3 134 -134 6 695 1087 116 11 39 chr4 14545801 14545981 -141084139 + B2_Mm2 SINE B2 3 177 -18 6 695 447 19 0 0 chr4 14547621 14547673 -141082447 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 695 594 0 0 0 chr4 14548684 14548750 -141081370 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 696 206 237 0 0 chr4 14549536 14549574 -141080546 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 696 292 246 14 0 chr4 14550167 14550236 -141079884 + ID4_ SINE ID 3 72 -11 7 696 1929 70 79 22 chr4 14552351 14552628 -141077492 - L1_Mus1 LINE L1 0 6567 6275 7 696 29186 42 0 4 chr4 14553763 14560646 -141069474 - L1Md_T LINE L1 0 6585 1 7 696 1357 95 11 0 chr4 14560794 14560983 -141069137 - B2_Mm1t SINE B2 -2 191 1 7 696 291 353 9 47 chr4 14561130 14561237 -141068883 + PB1D10 SINE Alu 7 109 -8 7 696 233 324 13 13 chr4 14561258 14561333 -141068787 + tRNA-Ala-GCG tRNA tRNA 1 75 0 7 696 21 0 0 0 chr4 14561333 14561354 -141068766 + AT_rich Low_complexity Low_complexity 1 21 0 7 696 540 292 15 54 chr4 14562350 14562553 -141067567 + B3A SINE B2 3 197 -1 7 696 341 207 23 195 chr4 14565158 14565332 -141064788 - MER53 DNA hAT -13 180 37 7 696 2177 106 21 24 chr4 14565474 14565812 -141064308 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 696 10314 101 129 25 chr4 14565812 14567929 -141062191 + IAPEz-int LTR ERVK 8 2345 -4136 8 696 346 125 0 0 chr4 14567928 14567984 -141062136 + IAPEz-int LTR ERVK 2719 2774 -3707 8 696 2959 22 0 0 chr4 14567982 14568339 -141061781 + IAPEz-int LTR ERVK 4001 4357 -2124 8 696 6099 34 3 18 chr4 14568330 14569113 -141061007 + IAPEz-int LTR ERVK 5709 6479 -2 8 696 2177 106 21 24 chr4 14569115 14569453 -141060667 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 696 7968 32 5 0 chr4 14570633 14571826 -141058294 - L1Md_F2 LINE L1 0 6582 5384 8 696 216 0 0 0 chr4 14573942 14573966 -141056154 + (A)n Simple_repeat Simple_repeat 1 24 0 8 696 1426 156 32 55 chr4 14574257 14574569 -141055551 + L1Md_F3 LINE L1 6278 6582 -2 8 696 217 289 92 0 chr4 14575578 14575654 -141054466 - MIR SINE MIR -32 230 148 8 696 2858 165 96 38 chr4 14575758 14576344 -141053776 + RLTR17 LTR ERVK 73 692 0 8 696 599 293 118 17 chr4 14576344 14576580 -141053540 + MTEa LTR MaLR 102 379 0 8 696 255 253 56 78 chr4 14576960 14577050 -141053070 - MER53 DNA hAT 0 193 106 8 696 313 287 158 23 chr4 14577449 14577670 -141052450 + L1_Mur3 LINE L1 4215 4465 -1415 8 696 6175 111 2 3 chr4 14577782 14578929 -141051191 + L1VL4 LINE L1 17 1162 -2397 8 696 11855 147 12 17 chr4 14578929 14581249 -141048871 + L1_Mur2 LINE L1 2824 5131 -746 9 696 5434 79 3 0 chr4 14581242 14582013 -141048107 - L1_Mm LINE L1 -875 5008 4236 9 696 4774 65 0 5 chr4 14582011 14582663 -141047457 + L1_Mm LINE L1 5010 5658 -225 9 696 2620 51 0 9 chr4 14582663 14582999 -141047121 + L1Md_F3 LINE L1 6252 6584 0 9 696 7038 58 28 4 chr4 14583002 14583918 -141046202 + L1Md_F2 LINE L1 5642 6579 -3 9 696 5790 156 18 13 chr4 14583927 14585445 -141044675 + Lx LINE L1 5123 6643 -11 9 696 2498 198 73 186 chr4 14585447 14585704 -141044416 - RMER12B LTR ERVK -692 712 464 9 696 1154 75 0 0 chr4 14585704 14585851 -141044269 - B1_Mus1 SINE Alu 0 148 2 9 696 2498 204 144 40 chr4 14585851 14586371 -141043749 - RMER12B LTR ERVK -850 554 1 9 696 186 118 0 0 chr4 14587734 14587768 -141042352 + (GGAAA)n Simple_repeat Simple_repeat 5 38 0 9 696 726 138 110 7 chr4 14587914 14588060 -141042060 + Lx LINE L1 6478 6638 -16 9 696 582 15 0 0 chr4 14588060 14588127 -141041993 + (GGGGA)n Simple_repeat Simple_repeat 5 71 0 9 696 5933 14 0 0 chr4 14588128 14588833 -141041287 + L1Md_T LINE L1 4882 5586 -297 1 696 8563 29 0 0 chr4 14588833 14589829 -141040291 + L1Md_T LINE L1 5587 6582 0 1 696 618 14 0 0 chr4 14589843 14589914 -141040206 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 1 696 1215 102 0 0 chr4 14589917 14590094 -141040026 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 1 696 235 331 119 50 chr4 14590384 14590543 -141039577 - LTR86A1 LTR ERVL -2 511 342 1 696 287 356 24 59 chr4 14590824 14590994 -141039126 + L2a LINE L2 3263 3426 0 1 696 203 175 25 0 chr4 14591220 14591260 -141038860 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 1 696 213 397 26 0 chr4 14592160 14592276 -141037844 - MER5A DNA MER1_type -2 187 69 1 696 374 322 0 0 chr4 14593254 14593341 -141036779 - ID_B1 SINE B4 -58 166 80 1 696 357 109 0 0 chr4 14594454 14594509 -141035611 + (CATA)n Simple_repeat Simple_repeat 3 57 0 1 696 212 380 11 21 chr4 14594867 14594961 -141035159 - L2c LINE L2 -41 3346 3254 1 696 981 306 62 25 chr4 14596224 14596626 -141033494 + Lx7 LINE L1 6207 6623 -1073 1 696 332 277 0 71 chr4 14596626 14596707 -141033413 + Lx7 LINE L1 7231 7308 -388 1 696 423 0 0 0 chr4 14596707 14596754 -141033366 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 696 332 277 0 71 chr4 14596754 14596812 -141033308 + Lx7 LINE L1 7309 7360 -336 1 696 266 243 14 0 chr4 14597933 14598003 -141032117 + Lx9 LINE L1 7358 7428 -216 1 696 234 0 0 0 chr4 14598075 14598101 -141032019 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 696 886 70 40 23 chr4 14598129 14598304 -141031816 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 696 773 246 50 70 chr4 14598692 14599033 -141031087 + RLTR15 LTR ERVK 1 334 -25 1 696 207 0 0 0 chr4 14599259 14599282 -141030838 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 1 696 36269 31 1 1 chr4 14600372 14607225 -141022895 - L1Md_T LINE L1 0 6585 1 1 696 4721 45 0 0 chr4 14607529 14608134 -141021986 + L1Md_F2 LINE L1 4982 5586 -297 1 696 7897 45 14 0 chr4 14608134 14609102 -141021018 + L1Md_F2 LINE L1 5587 6568 -14 1 696 2460 263 46 31 chr4 14609269 14610252 -141019868 + MYSERV-int LTR ERVK 3828 4767 -1783 1 696 1552 107 0 0 chr4 14610407 14610631 -141019489 + Lx2 LINE L1 6761 6984 -13 1 696 276 77 0 0 chr4 14610631 14610670 -141019450 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 1 696 474 299 29 52 chr4 14610677 14610850 -141019270 + RMER4A LTR ERVK 272 440 -26 1 696 4791 183 42 31 chr4 14610863 14612042 -141018078 + MYSERV6-int LTR ERVK 7768 8959 0 1 696 913 284 26 32 chr4 14612043 14612388 -141017732 + RLTR15 LTR ERVK 1 343 -16 1 696 327 293 10 0 chr4 14612613 14612712 -141017408 + L1Md_F LINE L1 619 718 -5801 1 696 2770 167 5 47 chr4 14612780 14613029 -141017091 + L1Md_F2 LINE L1 675 905 -5711 1 696 1086 74 13 0 chr4 14613029 14613178 -141016942 - L1_Mus1 LINE L1 0 6567 6417 1 696 30275 80 5 9 chr4 14613178 14617828 -141012292 + L1Md_F2 LINE L1 906 5561 -322 1 696 1218 222 45 45 chr4 14617828 14618187 -141011933 + RLTR10D LTR ERVK 1 359 0 1 696 30275 75 6 6 chr4 14618187 14618217 -141011903 + L1Md_F2 LINE L1 5562 5586 -297 1 696 7515 70 3 8 chr4 14618218 14619210 -141010910 + L1Md_F2 LINE L1 5588 6574 -8 1 696 346 195 0 11 chr4 14619218 14619306 -141010814 + L1_Mm LINE L1 1978 2064 -3819 1 696 2079 145 3 0 chr4 14619304 14619656 -141010464 + L1_Mm LINE L1 4564 4916 -967 1 696 700 89 0 0 chr4 14619677 14619778 -141010342 + L1_Mus2 LINE L1 6465 6565 -1 1 696 21 36 0 0 chr4 14619804 14619832 -141010288 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 7255 93 5 2 chr4 14619867 14620913 -141009207 + L1_Mus3 LINE L1 5588 6636 -2 1 696 207 0 0 0 chr4 14620918 14620941 -141009179 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 696 3791 64 2 2 chr4 14621779 14622261 -141007859 - L1_Mus1 LINE L1 -1 6566 6085 1 696 198 0 0 0 chr4 14623341 14623363 -141006757 + (TTATA)n Simple_repeat Simple_repeat 2 23 0 1 696 1780 177 39 55 chr4 14624326 14624708 -141005412 - ORR1C1 LTR MaLR -2 376 1 1 696 360 0 0 0 chr4 14624975 14625015 -141005105 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 696 464 313 0 0 chr4 14625234 14625349 -141004771 + B1F1 SINE Alu 34 148 -1 1 696 500 306 35 96 chr4 14626007 14626289 -141003831 + MTE2a LTR MaLR 102 366 -13 1 696 260 283 100 14 chr4 14626976 14627116 -141003004 - MIR SINE MIR -5 263 112 1 696 396 59 0 0 chr4 14627228 14627279 -141002841 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 696 213 315 24 0 chr4 14627454 14627544 -141002576 + MIRb SINE MIR 53 143 -133 1 696 2150 62 0 21 chr4 14628297 14628579 -141001541 + L1_Mus1 LINE L1 6292 6567 0 1 696 369 293 35 176 chr4 14628669 14628839 -141001281 - MTE2b LTR MaLR -225 154 9 1 696 322 39 19 38 chr4 14628887 14628940 -141001180 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 1 696 309 299 2 25 chr4 14628940 14629030 -141001090 + MLT1C LTR MaLR 350 427 -40 1 696 4854 64 10 2 chr4 14629716 14630343 -140999777 + L1_Mus1 LINE L1 5936 6567 0 1 696 302 356 18 98 chr4 14630354 14630578 -140999542 + RMER4A LTR ERVK 8 213 -253 1 696 980 57 7 7 chr4 14633439 14633581 -140996539 - L1Md_F2 LINE L1 -2 6580 6439 1 696 240 119 0 23 chr4 14633604 14633647 -140996473 - ID2 SINE ID -40 43 2 1 696 405 247 11 0 chr4 14634309 14634398 -140995722 + MIR SINE MIR 76 165 -97 1 696 24 67 0 0 chr4 14634546 14634591 -140995529 + AT_rich Low_complexity Low_complexity 1 45 0 1 696 367 180 0 0 chr4 14634754 14634815 -140995305 + RMER6B LTR ERVK 1 61 -400 1 696 193 29 29 29 chr4 14635442 14635477 -140994643 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 696 22 0 0 0 chr4 14636837 14636859 -140993261 + AT_rich Low_complexity Low_complexity 1 22 0 1 696 495 0 0 0 chr4 14636911 14636966 -140993154 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 696 824 333 24 12 chr4 14637288 14637534 -140992586 + B4A SINE B4 4 252 -40 1 696 819 92 213 122 chr4 14637535 14637614 -140992506 + Lx4A LINE L1 5662 5740 -1318 1 696 1063 44 89 0 chr4 14637614 14637749 -140992371 + B1_Mm SINE Alu 1 147 0 1 696 1076 124 0 11 chr4 14637756 14637935 -140992185 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 696 819 92 213 122 chr4 14637935 14638044 -140992076 + Lx4A LINE L1 5741 5876 -1182 1 696 859 79 8 8 chr4 14638035 14638163 -140991957 + Lx4A LINE L1 6496 6623 -435 1 696 586 272 42 18 chr4 14638163 14638328 -140991792 + B4A SINE B4 124 292 0 1 696 21 0 0 0 chr4 14638619 14638640 -140991480 + AT_rich Low_complexity Low_complexity 1 21 0 1 696 599 13 39 0 chr4 14639080 14639158 -140990962 + (TAAAA)n Simple_repeat Simple_repeat 5 85 0 1 696 999 173 31 5 chr4 14639221 14639413 -140990707 - ORR1C1 LTR MaLR -181 197 1 1 696 1442 215 76 6 chr4 14640153 14640467 -140989653 + RMER1B Other Other 62 397 -669 1 696 4622 76 5 5 chr4 14640511 14641160 -140988960 - Lx LINE L1 -419 6235 5587 1 696 1807 139 53 3 chr4 14641166 14641484 -140988636 + Lx LINE L1 6315 6648 -6 1 696 459 0 0 0 chr4 14642019 14642070 -140988050 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 696 199 353 82 56 chr4 14642559 14642754 -140987366 + L2 LINE L2 2793 2992 -427 1 696 231 61 0 0 chr4 14642765 14642798 -140987322 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 696 243 0 0 0 chr4 14642899 14642926 -140987194 + (T)n Simple_repeat Simple_repeat 1 27 0 1 696 2195 123 3 0 chr4 14642926 14643244 -140986876 - ORR1A2 LTR MaLR -8 319 1 1 696 1555 232 32 40 chr4 14644124 14644497 -140985623 + ORR1D2 LTR MaLR 1 370 0 1 696 192 352 11 11 chr4 14644511 14644600 -140985520 + L2b LINE L2 2625 2713 -706 1 696 1265 103 21 5 chr4 14644800 14644986 -140985134 - B2_Mm2 SINE B2 -6 189 1 1 696 279 375 132 42 chr4 14645037 14645326 -140984794 + L2b LINE L2 3023 3337 -38 1 696 21 36 0 0 chr4 14645546 14645574 -140984546 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 774 248 111 21 chr4 14646036 14646324 -140983796 - Lx6 LINE L1 -26 7434 7121 1 696 1318 282 147 18 chr4 14647027 14647525 -140982595 + MLT1F1 LTR MaLR 8 569 0 1 696 1827 219 75 20 chr4 14647752 14648401 -140981719 + Lx9 LINE L1 5321 6047 -1597 1 696 2087 297 126 19 chr4 14648463 14649474 -140980646 + Lx9 LINE L1 6386 7486 -158 1 696 489 34 0 0 chr4 14649474 14649533 -140980587 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 696 2087 297 126 19 chr4 14649533 14649657 -140980463 + Lx9 LINE L1 7487 7642 -2 1 696 26 30 0 0 chr4 14649670 14649703 -140980417 + AT_rich Low_complexity Low_complexity 1 33 0 1 696 3445 67 0 47 chr4 14650009 14650497 -140979623 - L1_Mus2 LINE L1 0 6566 6102 1 696 795 245 61 19 chr4 14651115 14651377 -140978743 + MER47A DNA MER2_type 94 366 0 1 696 297 244 8 50 chr4 14652233 14652354 -140977766 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 696 513 311 95 123 chr4 14652569 14652958 -140977162 + MLT2B4 LTR ERVL 1 378 -178 1 696 210 91 0 0 chr4 14652988 14653021 -140977099 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 696 1306 101 0 6 chr4 14653408 14653588 -140976532 + B2_Mm2 SINE B2 1 179 -16 1 696 4332 152 14 32 chr4 14653756 14654703 -140975417 + Lx7 LINE L1 5066 6004 -1692 1 696 3120 226 35 21 chr4 14654704 14655454 -140974666 + Lx7 LINE L1 6483 7242 -454 1 696 1233 198 48 21 chr4 14655475 14655805 -140974315 + Lx7 LINE L1 7358 7696 0 1 696 262 203 0 0 chr4 14655858 14655917 -140974203 + Lx7 LINE L1 5121 5179 -701 1 696 2548 184 33 36 chr4 14655917 14656226 -140973894 + Lx7 LINE L1 5136 5451 -429 1 696 1151 74 23 0 chr4 14656226 14656402 -140973718 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 696 2548 184 33 36 chr4 14656402 14656672 -140973448 + Lx7 LINE L1 5452 5713 -167 1 696 8611 6 0 0 chr4 14656682 14657847 -140972273 - L1Md_T LINE L1 0 6582 5418 1 696 2466 212 25 21 chr4 14657849 14658480 -140971640 + Lx7 LINE L1 5779 6412 -1284 1 696 1395 246 46 46 chr4 14658473 14658954 -140971166 + Lx7 LINE L1 7020 7500 -196 1 696 564 250 0 0 chr4 14658954 14659058 -140971062 - B3 SINE B2 -109 107 4 1 696 370 180 50 0 chr4 14660017 14660117 -140970003 - Lx9 LINE L1 -1 7643 7539 1 696 420 20 0 0 chr4 14660119 14660168 -140969952 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 696 313 185 31 0 chr4 14660169 14660234 -140969886 - Lx9 LINE L1 -175 7469 7403 1 696 481 285 83 30 chr4 14660585 14660788 -140969332 + MLT1A0 LTR MaLR 9 218 -147 1 696 341 197 99 0 chr4 14660847 14660918 -140969202 - MT2A LTR ERVL -452 81 4 1 696 549 214 14 7 chr4 14660921 14661062 -140969058 - MERVL_2A-int LTR ERVL 0 5761 5620 1 696 1036 185 25 36 chr4 14661066 14661341 -140968779 - MERVL_2A-int LTR ERVL -75 5686 5415 1 696 1561 247 114 7 chr4 14661408 14662233 -140967887 - Lx6 LINE L1 -695 6355 5423 1 696 32586 68 11 1 chr4 14662252 14668336 -140961784 - L1Md_F2 LINE L1 -2 6580 433 1 696 256 256 110 110 chr4 14668336 14668472 -140961648 + MLT1A0 LTR MaLR 239 374 0 1 696 497 303 101 22 chr4 14669419 14669808 -140960312 + L1MEg LINE L1 926 1423 -4992 1 696 1275 245 145 0 chr4 14669816 14670167 -140959953 - MTD LTR MaLR 0 419 18 1 696 432 329 37 83 chr4 14670173 14670498 -140959622 + L1MEg LINE L1 1424 1733 -4682 1 696 405 38 0 0 chr4 14670829 14670882 -140959238 + L1Md_F2 LINE L1 6516 6568 -14 2 696 2006 175 119 4 chr4 14671226 14671680 -140958440 - Lx2B LINE L1 -511 6489 5984 2 696 261 216 59 0 chr4 14671684 14671776 -140958344 + GA-rich Low_complexity Low_complexity 2 99 0 2 696 1467 67 0 10 chr4 14671776 14671957 -140958163 + (GAA)n Simple_repeat Simple_repeat 1 181 -315 2 696 1467 67 0 10 chr4 14671966 14672278 -140957842 + (GAA)n Simple_repeat Simple_repeat 182 496 0 2 696 2768 103 28 10 chr4 14673178 14673578 -140956542 - MTB_Mm LTR MaLR 0 407 1 2 696 504 86 0 0 chr4 14673588 14673658 -140956462 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 2 696 734 300 105 19 chr4 14674210 14674468 -140955652 + B4A SINE B4 9 288 -4 2 696 342 235 15 0 chr4 14675173 14675241 -140954879 - ID2 SINE ID -11 72 4 2 696 612 43 21 11 chr4 14675893 14675986 -140954134 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 696 236 198 0 24 chr4 14676013 14676037 -140954083 + (TCTCTG)n Simple_repeat Simple_repeat 1 22 0 2 696 216 97 0 0 chr4 14676037 14676068 -140954052 + (TATG)n Simple_repeat Simple_repeat 4 34 0 2 696 236 198 0 24 chr4 14676068 14676126 -140953994 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 2 696 869 213 24 0 chr4 14677009 14677178 -140952942 + MER5A DNA MER1_type 3 175 -14 2 696 801 177 0 21 chr4 14677562 14677706 -140952414 + B1_Mur3 SINE Alu 1 141 -8 2 696 482 316 6 26 chr4 14678290 14678446 -140951674 + RSINE1 SINE B4 4 156 -9 2 696 22 80 0 0 chr4 14679305 14679355 -140950765 + AT_rich Low_complexity Low_complexity 1 50 0 2 696 618 153 8 0 chr4 14679358 14679482 -140950638 - Lx9 LINE L1 -15 7629 7505 2 696 407 305 45 6 chr4 14679556 14679713 -140950407 - ID_B1 SINE B4 -125 167 1 2 696 830 250 24 19 chr4 14679842 14680050 -140950070 + B3 SINE B2 2 210 -6 2 697 22 0 0 0 chr4 14680090 14680112 -140950008 + AT_rich Low_complexity Low_complexity 1 22 0 2 697 936 129 0 28 chr4 14680194 14680338 -140949782 + B1_Mur3 SINE Alu 2 141 -8 2 697 29 28 0 0 chr4 14681627 14681663 -140948457 + AT_rich Low_complexity Low_complexity 1 36 0 2 697 869 281 114 114 chr4 14681957 14682298 -140947822 + MTE2b LTR MaLR 1 341 -38 2 697 555 321 55 25 chr4 14682353 14682717 -140947403 + L1MB3 LINE L1 5602 5976 -207 2 697 253 201 82 82 chr4 14682829 14682935 -140947185 + L1MB3 LINE L1 6031 6136 -47 2 697 746 179 0 76 chr4 14682935 14683092 -140947028 + B1_Mur3 SINE Alu 5 149 0 2 697 253 201 82 82 chr4 14683092 14683131 -140946989 + L1MB3 LINE L1 6137 6176 -7 2 697 54 0 0 0 chr4 14683198 14683252 -140946868 + AT_rich Low_complexity Low_complexity 1 54 0 2 697 4950 102 0 0 chr4 14684728 14685453 -140944667 - L1_Mm LINE L1 -303 5580 4856 2 697 1464 113 39 73 chr4 14685453 14685739 -140944381 + L1_Mus3 LINE L1 6311 6586 -52 2 697 31115 75 2 7 chr4 14686008 14691274 -140938846 + L1Md_F2 LINE L1 256 5589 -297 2 697 8138 45 1 0 chr4 14691274 14692255 -140937865 + L1Md_F2 LINE L1 5590 6571 -14 2 697 4032 81 77 9 chr4 14692396 14693059 -140937061 - MusHAL1 LINE L1 -632 2080 1373 2 697 40 49 0 0 chr4 14694153 14694214 -140935906 + AT_rich Low_complexity Low_complexity 1 61 0 2 697 883 254 25 10 chr4 14694639 14694657 -140935463 - B3 SINE B2 -10 206 190 2 697 402 21 0 0 chr4 14694657 14694704 -140935416 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 697 883 254 25 10 chr4 14694704 14694888 -140935232 - B3 SINE B2 -27 189 1 2 697 284 284 69 0 chr4 14695303 14695405 -140934715 + MER103 DNA DNA 18 126 -40 2 697 380 302 108 23 chr4 14695658 14695787 -140934333 - ID_B1 SINE B4 -6 218 79 2 697 2408 184 38 13 chr4 14697093 14697610 -140932510 + RMER1B Other Other 517 1331 -11 2 697 575 261 62 29 chr4 14698548 14698570 -140931550 - B3 SINE B2 0 216 194 2 697 249 33 0 0 chr4 14698570 14698600 -140931520 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 697 306 0 0 0 chr4 14698602 14698636 -140931484 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 697 575 261 62 29 chr4 14698636 14698819 -140931301 - B3 SINE B2 -23 193 4 2 697 689 275 0 37 chr4 14698947 14699136 -140930984 + B3A SINE B2 1 182 -16 2 697 763 283 121 23 chr4 14700386 14700650 -140929470 + B4A SINE B4 3 292 0 2 697 216 0 0 0 chr4 14701803 14701827 -140928293 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 697 684 177 0 0 chr4 14701838 14701951 -140928169 + B1_Mur3 SINE Alu 2 114 -35 2 697 644 61 10 0 chr4 14703628 14703726 -140926394 + (TC)n Simple_repeat Simple_repeat 1 99 0 2 697 333 0 0 0 chr4 14703726 14703763 -140926357 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 697 1214 265 33 64 chr4 14703898 14704353 -140925767 - Lx6 LINE L1 -9 7451 7011 2 697 651 308 80 16 chr4 14704356 14704928 -140925192 - L1_Rod LINE L1 -521 5779 5100 2 697 414 216 14 54 chr4 14704916 14705063 -140925057 - L1_Rod LINE L1 -1855 4285 4145 2 697 302 256 132 31 chr4 14705080 14705100 -140925020 + B4A SINE B4 59 91 -201 2 697 476 241 18 18 chr4 14705100 14705210 -140924910 + B1_Mur3 SINE Alu 2 111 -38 2 697 1264 34 0 0 chr4 14705495 14705643 -140924477 + B1_Mus1 SINE Alu 1 148 0 2 697 185 83 28 0 chr4 14705644 14705680 -140924440 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2 697 709 228 29 6 chr4 14705695 14705867 -140924253 + Lx7 LINE L1 7521 7696 0 2 697 720 229 105 11 chr4 14705899 14706089 -140924031 - B3 SINE B2 -7 209 2 2 697 343 263 21 60 chr4 14706760 14706881 -140923239 - PB1D7 SINE Alu -6 121 4 2 697 609 264 64 0 chr4 14707729 14707869 -140922251 - RSINE1 SINE B4 -15 150 2 2 697 378 0 0 0 chr4 14707983 14708025 -140922095 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 697 1330 19 6 0 chr4 14708033 14708191 -140921929 - B2_Mm1a SINE B2 -33 160 2 2 697 198 243 188 45 chr4 14708193 14708305 -140921815 - L3 LINE CR1 -313 4176 4049 2 697 435 233 5 128 chr4 14708827 14709014 -140921106 - L3 LINE CR1 -708 3781 3618 2 697 1534 189 98 22 chr4 14709380 14709737 -140920383 + Lx6 LINE L1 6866 7249 -211 2 697 2017 228 58 22 chr4 14709811 14710349 -140919771 - Lx5 LINE L1 -17 7033 6477 2 697 477 188 161 12 chr4 14710429 14710591 -140919529 + Lx7 LINE L1 7511 7696 0 2 697 852 39 0 0 chr4 14710618 14710722 -140919398 + (GGGA)n Simple_repeat Simple_repeat 1 104 0 2 697 891 220 128 76 chr4 14710727 14710978 -140919142 - B4 SINE B4 -21 271 8 2 697 259 264 80 66 chr4 14711904 14712031 -140918089 + MIRb SINE MIR 61 193 -75 2 697 1243 125 21 5 chr4 14712637 14712830 -140917290 - URR1A DNA MER1_type -24 202 7 2 697 442 297 55 67 chr4 14712830 14712875 -140917245 + CYRA11_Mm Unknown Y-chromosome 195 429 -188 2 697 359 239 113 27 chr4 14713122 14713307 -140916813 - L1MA9 LINE L1 -174 6138 5938 2 697 465 264 26 26 chr4 14713414 14713527 -140916593 - ID_B1 SINE B4 -7 217 105 2 697 812 274 70 99 chr4 14713594 14714141 -140915979 - L1MA9 LINE L1 -456 5856 5326 2 697 333 0 0 0 chr4 14714245 14714282 -140915838 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 697 382 194 122 0 chr4 14714411 14714550 -140915570 + Lx9 LINE L1 7466 7621 -23 2 697 214 152 17 17 chr4 14714807 14714867 -140915253 + CT-rich Low_complexity Low_complexity 1 60 0 2 697 584 217 58 35 chr4 14715393 14715565 -140914555 - Lx2B LINE L1 -3 6997 6822 2 697 1854 142 3 20 chr4 14715570 14715871 -140914249 + ORR1A3-int LTR MaLR 1417 1712 -251 2 697 620 72 0 12 chr4 14715878 14715962 -140914158 - B2_Mm1t SINE B2 -14 179 97 2 697 248 185 86 0 chr4 14715993 14716074 -140914046 + Lx9 LINE L1 7477 7564 -80 2 697 2291 180 18 11 chr4 14716087 14716536 -140913584 - Lx2B LINE L1 -222 6778 6327 2 697 4323 164 67 25 chr4 14716536 14717323 -140912797 + RMER13A LTR ERVK 1 820 -40 2 697 2145 177 13 34 chr4 14717339 14717723 -140912397 - Lx2B LINE L1 -665 6335 5962 2 697 1471 64 16 0 chr4 14717723 14717911 -140912209 - B2_Mm2 SINE B2 -4 191 1 2 697 2145 177 13 34 chr4 14717911 14717995 -140912125 - Lx2B LINE L1 -1039 5961 5876 2 697 252 0 0 0 chr4 14717995 14718023 -140912097 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 697 743 197 6 0 chr4 14718032 14718210 -140911910 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 697 3440 25 5 0 chr4 14718233 14718627 -140911493 - MTA_Mm LTR MaLR 0 396 1 2 697 9206 27 9 0 chr4 14718627 14719715 -140910405 - MTA_Mm-int LTR MaLR 0 1098 1 2 697 3454 23 5 0 chr4 14719715 14720109 -140910011 - MTA_Mm LTR MaLR 0 396 1 2 697 582 219 0 0 chr4 14720131 14720282 -140909838 + (TA)n Simple_repeat Simple_repeat 2 152 0 2 697 5313 147 26 3 chr4 14720282 14721205 -140908915 - Lx2B LINE L1 -12 5874 4931 2 697 263 281 83 46 chr4 14723573 14723789 -140906331 + L1MC5 LINE L1 6968 7191 -770 2 697 707 157 54 7 chr4 14724035 14724183 -140905937 - URR1A DNA MER1_type 0 226 72 2 697 240 349 53 7 chr4 14724781 14724931 -140905189 - L2a LINE L2 -67 3359 3203 2 697 456 290 56 37 chr4 14725290 14725451 -140904669 + B3 SINE B2 50 213 -3 2 697 336 316 106 35 chr4 14725512 14725653 -140904467 + B4A SINE B4 26 176 -116 2 697 236 361 45 36 chr4 14726073 14726185 -140903935 - MLT1F1 LTR MaLR -115 464 352 2 697 353 312 34 120 chr4 14726208 14726383 -140903737 - MLT1F1 LTR MaLR -370 199 40 2 697 298 302 125 38 chr4 14726462 14726815 -140903305 - L1MB8 LINE L1 -281 5897 5523 2 697 180 0 0 0 chr4 14726868 14726888 -140903232 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 697 344 279 154 104 chr4 14726977 14726999 -140903121 - MLT1F1-int LTR MaLR -738 671 648 2 697 675 258 25 12 chr4 14726999 14727160 -140902960 - RSINE1 SINE B4 0 165 3 2 697 344 279 154 104 chr4 14727160 14727357 -140902763 - MLT1F1-int LTR MaLR -762 647 441 2 697 1115 231 72 91 chr4 14727364 14727814 -140902306 - MT2A LTR ERVL -10 591 3 2 697 1655 16 0 5 chr4 14728395 14728586 -140901534 + B2_Mm1a SINE B2 1 190 -3 2 697 714 359 77 14 chr4 14728605 14729088 -140901032 - MT2A LTR ERVL -20 513 1 2 697 283 269 45 0 chr4 14729399 14729466 -140900654 - ID4_ SINE ID -10 73 4 2 697 209 366 73 8 chr4 14730327 14730451 -140899669 + MIRm SINE MIR 16 147 -129 2 697 258 338 103 7 chr4 14731017 14731172 -140898948 + MIRb SINE MIR 83 252 -16 2 697 590 157 185 0 chr4 14731363 14731471 -140898649 - B1_Mur1 SINE Alu -21 128 1 2 697 337 286 71 52 chr4 14731471 14731522 -140898598 - MT2B LTR ERVL -435 166 113 2 697 3344 48 0 0 chr4 14731699 14732095 -140898025 - MTA_Mm LTR MaLR 0 396 1 2 697 373 339 52 72 chr4 14732625 14732876 -140897244 - MER102b DNA MER1_type -87 254 9 2 697 398 305 14 64 chr4 14733280 14733420 -140896700 - RSINE1 SINE B4 -31 134 2 3 697 1090 89 112 12 chr4 14734066 14734236 -140895884 - B2_Mm2 SINE B2 -7 188 2 3 697 1936 127 41 91 chr4 14734265 14734683 -140895437 + Lx2B LINE L1 5340 5731 -1965 3 697 5030 124 78 18 chr4 14734678 14735604 -140894516 + Lx2B LINE L1 5973 6953 -47 3 697 25 31 0 0 chr4 14736065 14736097 -140894023 + AT_rich Low_complexity Low_complexity 1 32 0 3 697 225 83 0 0 chr4 14736288 14736324 -140893796 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 697 275 253 53 13 chr4 14737536 14737612 -140892508 - ID4 SINE ID -3 80 2 3 697 184 300 138 0 chr4 14740098 14740178 -140889942 - MER5A DNA MER1_type -95 94 4 3 697 191 295 48 60 chr4 14740339 14740422 -140889698 - MIRb SINE MIR -9 259 178 3 697 264 207 17 0 chr4 14740527 14740585 -140889535 - B1_Mus1 SINE Alu -56 92 34 3 697 959 104 7 0 chr4 14740957 14741092 -140889028 + B1_Mus2 SINE Alu 2 137 -10 3 697 181 0 33 33 chr4 14741092 14741122 -140888998 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 697 282 192 87 9 chr4 14742136 14742221 -140887899 - PB1D10 SINE Alu -46 103 21 3 697 251 259 22 56 chr4 14742330 14742420 -140887700 - FAM SINE Alu -3 308 222 3 697 5684 33 3 0 chr4 14743400 14744073 -140886047 + L1Md_F2 LINE L1 5908 6582 0 3 697 580 222 185 48 chr4 14744090 14744279 -140885841 + B3 SINE B2 2 216 0 3 697 220 279 14 60 chr4 14744347 14744447 -140885673 + L2c LINE L2 3283 3386 -1 3 697 309 314 88 0 chr4 14745845 14745982 -140884138 + B1F SINE Alu 1 149 0 3 697 442 234 18 18 chr4 14746034 14746147 -140883973 - PB1D10 SINE Alu -1 116 4 3 697 654 203 15 38 chr4 14746243 14746376 -140883744 + B1_Mur2 SINE Alu 15 144 -5 3 697 1118 53 0 0 chr4 14746692 14746825 -140883295 - B1_Mus2 SINE Alu -13 134 2 3 697 350 229 106 35 chr4 14747116 14747229 -140882891 - MIR3 SINE MIR -32 176 56 3 697 180 0 0 0 chr4 14747826 14747846 -140882274 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 3 697 370 239 101 11 chr4 14747860 14747949 -140882171 - RSINE1 SINE B4 -55 110 14 3 697 21 57 0 0 chr4 14748433 14748468 -140881652 + AT_rich Low_complexity Low_complexity 1 35 0 3 697 269 218 13 0 chr4 14749269 14749347 -140880773 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 697 244 302 56 34 chr4 14749632 14749721 -140880399 + MIRb SINE MIR 151 241 -27 3 697 264 231 0 0 chr4 14749922 14749987 -140880133 + A-rich Low_complexity Low_complexity 1 65 0 3 697 443 274 36 89 chr4 14750967 14751135 -140878985 - RSINE1 SINE B4 -2 163 5 3 697 539 173 47 28 chr4 14751186 14751293 -140878827 - PB1D10 SINE Alu -8 109 1 3 697 1319 56 90 0 chr4 14751494 14751672 -140878448 + B2_Mm2 SINE B2 2 195 0 3 697 210 304 24 48 chr4 14751786 14751869 -140878251 + MIRb SINE MIR 56 136 -132 3 697 342 187 0 13 chr4 14751983 14751999 -140878121 + ID SINE ID 67 81 -143 3 697 582 66 162 13 chr4 14751999 14752104 -140878016 + B1_Mus2 SINE Alu 1 108 -39 3 697 519 257 0 48 chr4 14752367 14752514 -140877606 + ID_B1 SINE B4 79 218 -6 3 697 24 0 0 0 chr4 14753923 14753947 -140876173 + AT_rich Low_complexity Low_complexity 1 24 0 3 697 24 0 0 0 chr4 14754287 14754311 -140875809 + AT_rich Low_complexity Low_complexity 1 24 0 3 697 840 131 21 21 chr4 14754322 14754462 -140875658 + B1_Mur2 SINE Alu 2 141 -8 3 697 1366 92 5 0 chr4 14754473 14754658 -140875462 + B2_Mm1t SINE B2 1 186 -7 3 697 3220 112 8 6 chr4 14754809 14755283 -140874837 - MT2C_Mm LTR ERVL 0 475 1 3 697 431 183 37 0 chr4 14755512 14755594 -140874526 + ORR1D2-int LTR MaLR 1286 1370 0 3 697 1051 291 57 70 chr4 14755596 14755966 -140874154 + ORR1D2 LTR MaLR 6 370 0 3 697 2814 159 19 31 chr4 14756048 14756534 -140873586 - RLTR19A LTR ERVK 0 496 17 3 697 776 191 65 42 chr4 14756664 14756960 -140873160 - RMER17C LTR ERVK 0 410 1 3 697 6550 206 56 60 chr4 14758583 14758989 -140871131 + Lx7 LINE L1 5806 6215 -1481 3 697 3087 97 44 4 chr4 14758989 14759446 -140870674 + MT2C_Mm LTR ERVL 1 475 0 3 697 6550 206 56 60 chr4 14759446 14759489 -140870631 + Lx7 LINE L1 6216 6251 -1445 3 697 324 0 0 0 chr4 14759489 14759525 -140870595 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 697 6550 206 56 60 chr4 14759525 14759558 -140870562 + Lx7 LINE L1 6252 6274 -1422 3 697 180 0 0 0 chr4 14759558 14759578 -140870542 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 697 6550 206 56 60 chr4 14759578 14760663 -140869457 + Lx7 LINE L1 6275 7390 -306 3 697 474 18 0 0 chr4 14760663 14760718 -140869402 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 697 6550 206 56 60 chr4 14760718 14760915 -140869205 + Lx7 LINE L1 7391 7566 -130 3 697 3772 138 22 0 chr4 14760913 14761592 -140868528 - L1_Mur2 LINE L1 -1298 4579 3886 3 697 26039 124 5 18 chr4 14761553 14762928 -140867192 + L1_Mus3 LINE L1 1511 2891 -2992 3 697 1254 40 0 0 chr4 14762928 14763076 -140867044 + B1_Mus1 SINE Alu 1 148 0 3 697 26039 111 6 14 chr4 14763076 14766878 -140863242 + L1_Mus3 LINE L1 2892 6638 0 3 697 2271 142 21 16 chr4 14767259 14767639 -140862481 + RLTR14 LTR ERV1 1 382 0 3 697 671 300 81 72 chr4 14767643 14768088 -140862032 - RMER15-int LTR ERVL -3198 1801 1353 3 697 809 296 81 0 chr4 14768153 14768437 -140861683 - RMER15-int LTR ERVL -3736 1263 957 3 697 2347 227 30 35 chr4 14768737 14769308 -140860812 + RMER15 LTR ERVL 8 575 0 3 697 180 97 0 0 chr4 14769512 14769543 -140860577 + (A)n Simple_repeat Simple_repeat 1 31 0 3 697 357 294 52 71 chr4 14769677 14769831 -140860289 - RMER15 LTR ERVL -22 553 403 3 697 379 332 82 10 chr4 14769833 14770028 -140860092 - Lx8 LINE L1 -223 7250 7042 3 697 247 270 40 0 chr4 14770228 14770302 -140859818 + ORR1E LTR MaLR 34 110 -249 3 697 1786 194 189 40 chr4 14770306 14770774 -140859346 + RMER1C Other Other 740 1291 -51 3 697 1902 113 201 3 chr4 14770774 14771103 -140859017 - ORR1B1 LTR MaLR 0 394 1 3 697 1786 194 189 40 chr4 14771103 14771159 -140858961 + RMER1C Other Other 1292 1342 0 3 697 423 56 0 0 chr4 14771251 14771305 -140858815 + (CCCCCT)n Simple_repeat Simple_repeat 3 56 0 3 697 1024 75 15 0 chr4 14771559 14771692 -140858428 + B1_Mus1 SINE Alu 2 136 -12 3 697 267 54 0 0 chr4 14771694 14771731 -140858389 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 3 697 383 56 19 0 chr4 14772171 14772225 -140857895 + (TTTTC)n Simple_repeat Simple_repeat 4 58 0 3 697 617 200 123 0 chr4 14773664 14773794 -140856326 - B1_Mus2 SINE Alu -1 146 1 3 697 35 24 0 0 chr4 14774044 14774086 -140856034 + AT_rich Low_complexity Low_complexity 1 42 0 3 697 24 32 0 0 chr4 14774121 14774152 -140855968 + AT_rich Low_complexity Low_complexity 1 31 0 3 697 848 164 0 7 chr4 14774188 14774329 -140855791 + B1_Mur4 SINE Alu 4 143 -7 3 697 1015 112 58 23 chr4 14774410 14774583 -140855537 - B2_Mm2 SINE B2 -14 181 3 3 697 228 163 0 0 chr4 14774977 14775020 -140855100 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 697 229 200 0 22 chr4 14775085 14775131 -140854989 + L2a LINE L2 3373 3417 -9 3 697 281 263 40 0 chr4 14775491 14775567 -140854553 + ID4 SINE ID 5 83 0 3 697 400 262 59 103 chr4 14775600 14775641 -140854479 - MLT1B LTR MaLR 0 390 352 3 697 1145 65 0 0 chr4 14775641 14775780 -140854340 + B1_Mus1 SINE Alu 5 143 -5 3 697 182 62 31 0 chr4 14775782 14775814 -140854306 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 697 400 262 59 103 chr4 14775814 14775973 -140854147 - MLT1B LTR MaLR -39 351 196 3 697 3229 55 14 0 chr4 14776016 14776432 -140853688 - L1Md_F2 LINE L1 0 6582 6161 3 697 359 41 20 0 chr4 14776598 14776647 -140853473 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 697 459 0 0 0 chr4 14776647 14776697 -140853423 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 697 233 325 136 8 chr4 14776706 14776824 -140853296 - MLT1B LTR MaLR -240 134 2 3 697 618 193 35 9 chr4 14777102 14777217 -140852903 - ID_B1 SINE B4 -4 220 103 3 697 742 214 46 20 chr4 14777351 14777547 -140852573 - Lx5 LINE L1 -68 6982 6782 3 697 276 38 36 36 chr4 14777687 14777742 -140852378 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 697 417 311 28 0 chr4 14777790 14777884 -140852236 + B1F1 SINE Alu 1 97 -52 3 697 918 249 64 27 chr4 14777884 14778155 -140851965 - MT2A LTR ERVL 0 533 248 3 697 237 128 0 0 chr4 14778155 14778202 -140851918 + (CAG)n Simple_repeat Simple_repeat 2 48 0 3 697 918 249 64 27 chr4 14778202 14778227 -140851893 - MT2A LTR ERVL -286 247 226 3 697 1855 239 79 112 chr4 14778381 14778393 -140851727 - RMER19C LTR ERVK 0 611 600 3 697 1194 97 57 0 chr4 14778393 14778569 -140851551 - B2_Mm2 SINE B2 -8 187 2 3 697 1855 239 79 112 chr4 14778569 14779188 -140850932 - RMER19C LTR ERVK -12 599 2 3 697 269 211 88 0 chr4 14779234 14779291 -140850829 + B1F SINE Alu 88 149 0 3 697 248 26 77 0 chr4 14779421 14779460 -140850660 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 3 697 309 256 0 114 chr4 14779463 14779595 -140850525 - PB1D10 SINE Alu 0 117 1 3 697 282 203 17 17 chr4 14779729 14779789 -140850331 - MTEa LTR MaLR -9 370 311 3 697 245 167 0 18 chr4 14779795 14779850 -140850270 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 697 201 255 0 18 chr4 14779866 14779922 -140850198 + (TATG)n Simple_repeat Simple_repeat 4 58 0 3 697 2219 45 0 15 chr4 14780080 14780349 -140849771 + L1Md_F2 LINE L1 6318 6582 0 3 697 201 29 57 29 chr4 14780636 14780671 -140849449 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 697 291 365 112 44 chr4 14781179 14781500 -140848620 + MLT1H LTR MaLR 41 383 -166 3 697 993 111 89 0 chr4 14781560 14781695 -140848425 - B1_Mus1 SINE Alu 0 148 2 3 697 392 336 55 23 chr4 14781882 14782101 -140848019 + MLT1H-int LTR MaLR 111 336 -1073 3 697 981 148 47 57 chr4 14782165 14782358 -140847762 + B2_Mm2 SINE B2 2 192 -3 3 697 708 378 97 5 chr4 14782476 14782848 -140847272 - MLT1E2 LTR MaLR -220 407 2 3 697 792 257 40 58 chr4 14783042 14783389 -140846731 - RLTR15 LTR ERVK -18 341 1 3 697 809 311 26 18 chr4 14783468 14783740 -140846380 - ORR1E-int LTR MaLR -1305 275 2 3 697 1298 251 34 46 chr4 14783749 14783924 -140846196 - ORR1E LTR MaLR -4 355 181 3 697 1173 254 75 132 chr4 14783924 14784573 -140845547 - RLTR18 LTR ERVK -4 612 1 3 697 1298 251 34 46 chr4 14784573 14784747 -140845373 - ORR1E LTR MaLR -179 180 10 3 697 267 103 0 0 chr4 14784995 14785034 -140845086 + (CATA)n Simple_repeat Simple_repeat 3 41 0 3 697 514 331 78 0 chr4 14786576 14786742 -140843378 + B3A SINE B2 2 180 -18 3 697 305 337 0 87 chr4 14786774 14786878 -140843242 + PB1 SINE Alu 3 97 -30 4 697 999 245 5 33 chr4 14786908 14787123 -140842997 - ID_B1 SINE B4 -11 213 5 4 697 755 250 0 34 chr4 14787293 14787471 -140842649 + Lx9 LINE L1 6602 6773 -871 4 697 1404 242 58 81 chr4 14787473 14787990 -140842130 - RLTR16 LTR ERVK 0 505 1 4 697 475 108 0 162 chr4 14788028 14788139 -140841981 + B1_Mus1 SINE Alu 36 128 -20 4 697 1413 233 165 40 chr4 14788139 14788170 -140841950 + Lx9 LINE L1 7083 7112 -532 4 697 2522 153 2 22 chr4 14788170 14788572 -140841548 + ORR1B1 LTR MaLR 1 394 0 4 697 1413 233 165 40 chr4 14788572 14788654 -140841466 + Lx9 LINE L1 7113 7197 -447 4 697 1489 79 16 21 chr4 14788654 14788848 -140841272 + B2_Mm2 SINE B2 1 193 -2 4 697 1413 233 165 40 chr4 14788848 14789211 -140840909 + Lx9 LINE L1 7198 7620 -24 4 697 261 0 0 0 chr4 14789790 14789819 -140840301 + (T)n Simple_repeat Simple_repeat 1 29 0 4 697 558 285 43 85 chr4 14790421 14790609 -140839511 - B3A SINE B2 -11 184 5 4 697 294 29 0 0 chr4 14791215 14791250 -140838870 + (TCC)n Simple_repeat Simple_repeat 1 35 0 4 697 24 0 0 0 chr4 14792559 14792583 -140837537 + GC_rich Low_complexity Low_complexity 1 24 0 4 697 192 40 0 0 chr4 14793002 14793027 -140837093 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 697 195 42 0 0 chr4 14793027 14793050 -140837070 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 697 1616 54 0 0 chr4 14793308 14793493 -140836627 - B2_Mm1t SINE B2 -7 186 2 4 697 270 0 0 0 chr4 14793589 14793619 -140836501 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 4 697 221 0 0 33 chr4 14793749 14793779 -140836341 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 697 899 112 0 0 chr4 14793785 14793910 -140836210 - B1_Mm SINE Alu -13 134 10 4 697 878 285 21 46 chr4 14794070 14794350 -140835770 - B4A SINE B4 0 292 20 4 697 264 59 0 0 chr4 14794403 14794437 -140835683 + (GGA)n Simple_repeat Simple_repeat 2 35 0 4 697 310 175 18 0 chr4 14794497 14794554 -140835566 - HAL1-3A_ME LINE L1 -825 2033 1976 4 697 555 190 280 7 chr4 14794566 14794709 -140835411 - B3A SINE B2 -16 182 1 4 697 2354 126 3 3 chr4 14794869 14795196 -140834924 + ORR1A2 LTR MaLR 1 327 0 4 697 2856 78 0 0 chr4 14795307 14795653 -140834467 + L1_Mus1 LINE L1 6221 6566 -1 4 697 1695 241 79 8 chr4 14795833 14796214 -140833906 - MTD LTR MaLR -2 417 10 4 697 185 341 75 107 chr4 14796557 14796810 -140833310 - L2b LINE L2 -202 3173 2929 4 697 228 284 278 21 chr4 14797568 14797665 -140832455 + PB1 SINE Alu 1 122 -5 4 697 250 370 81 47 chr4 14797779 14798037 -140832083 - L2b LINE L2 -785 2634 2368 4 697 915 163 21 0 chr4 14798636 14798777 -140831343 - B1_Mus1 SINE Alu 0 148 5 4 697 1430 90 16 5 chr4 14798796 14798985 -140831135 - B2_Mm2 SINE B2 -3 192 2 4 697 423 0 0 0 chr4 14799920 14799967 -140830153 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 697 1258 109 60 5 chr4 14800197 14800382 -140829738 + B2_Mm2 SINE B2 1 195 0 4 697 245 315 66 44 chr4 14800679 14800815 -140829305 - L2a LINE L2 -245 3181 3043 4 697 305 148 0 36 chr4 14800866 14800920 -140829200 + A-rich Low_complexity Low_complexity 1 51 0 4 697 1202 82 0 0 chr4 14800920 14801066 -140829054 + B1_Mus2 SINE Alu 2 147 0 4 697 305 148 0 36 chr4 14801066 14801095 -140829025 + A-rich Low_complexity Low_complexity 52 80 0 4 697 1231 49 0 14 chr4 14801251 14801397 -140828723 + B1_Mm SINE Alu 3 146 -1 4 697 285 29 0 0 chr4 14801556 14801590 -140828530 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 4 697 217 267 133 0 chr4 14801598 14801658 -140828462 - PB1D10 SINE Alu -9 108 41 4 697 186 43 0 0 chr4 14802063 14802086 -140828034 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 4 697 393 22 0 0 chr4 14803063 14803109 -140827011 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 697 25 65 0 0 chr4 14803635 14803681 -140826439 + AT_rich Low_complexity Low_complexity 1 46 0 4 697 1275 54 0 0 chr4 14803690 14803837 -140826283 - B1_Mus1 SINE Alu -1 147 1 4 697 720 0 0 0 chr4 14804101 14804181 -140825939 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 4 697 1420 86 16 11 chr4 14804261 14804450 -140825670 + B2_Mm2 SINE B2 1 190 -5 4 697 198 0 0 0 chr4 14804495 14804517 -140825603 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 4 697 207 276 0 0 chr4 14805520 14805578 -140824542 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 4 697 725 282 26 41 chr4 14805580 14805846 -140824274 - L1MA4A LINE L1 -365 5938 5677 4 697 3709 23 2 0 chr4 14805855 14806250 -140823870 + MTA_Mm LTR MaLR 1 396 0 4 697 3886 45 0 4 chr4 14806250 14806746 -140823374 + MTA_Mm-int LTR MaLR 1 494 -604 4 697 731 245 98 10 chr4 14806823 14806875 -140823245 - B3 SINE B2 0 216 164 4 697 351 65 0 0 chr4 14806875 14806921 -140823199 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 697 731 245 98 10 chr4 14806921 14807062 -140823058 - B3 SINE B2 -53 163 7 4 697 186 43 0 0 chr4 14807435 14807458 -140822662 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 4 697 183 290 42 28 chr4 14808699 14808770 -140821350 - L2 LINE L2 -833 2586 2515 4 697 3255 152 40 15 chr4 14809596 14810144 -140819976 - Lx4A LINE L1 0 7058 6497 4 698 1137 238 5 9 chr4 14811326 14811538 -140818582 + B3 SINE B2 1 211 -5 4 698 778 257 25 55 chr4 14811563 14811765 -140818355 - B3A SINE B2 -1 197 2 4 698 213 211 0 0 chr4 14811799 14811837 -140818283 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 698 378 0 0 0 chr4 14811961 14812003 -140818117 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 698 186 43 0 0 chr4 14813020 14813043 -140817077 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 698 251 210 0 19 chr4 14813305 14813361 -140816759 - B1F SINE Alu -43 74 23 4 698 1000 146 65 43 chr4 14814329 14814515 -140815605 + B2_Mm2 SINE B2 2 191 -4 4 698 1341 58 0 0 chr4 14815147 14815507 -140814613 + (TG)n Simple_repeat Simple_repeat 1 360 0 4 698 690 296 74 19 chr4 14815529 14815787 -140814333 - B4A SINE B4 -20 272 1 4 698 428 283 56 9 chr4 14815789 14815896 -140814224 - PB1D10 SINE Alu -36 113 2 4 698 856 157 7 14 chr4 14816668 14816810 -140813310 - B1_Mur1 SINE Alu -2 147 7 4 698 903 207 32 55 chr4 14816847 14817067 -140813053 + B3 SINE B2 2 216 0 4 698 334 352 58 53 chr4 14817565 14817808 -140812312 - MER47B DNA MER2_type -130 288 45 4 698 526 202 18 35 chr4 14818034 14818147 -140811973 - B3 SINE B2 -10 206 96 4 698 833 118 0 36 chr4 14818155 14818295 -140811825 - Lx LINE L1 0 6654 6520 4 698 1747 89 58 4 chr4 14818295 14818553 -140811567 + Lx LINE L1 5777 6048 -606 4 698 350 237 198 63 chr4 14818553 14818679 -140811441 - B3 SINE B2 -73 143 1 4 698 439 292 58 27 chr4 14818743 14818968 -140811152 - L1MC4 LINE L1 -382 7660 7429 4 698 21 0 0 0 chr4 14819040 14819061 -140811059 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 189 121 0 0 chr4 14819659 14819692 -140810428 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 4 698 623 124 0 42 chr4 14821328 14821446 -140808674 + B1_Mus2 SINE Alu 1 113 -34 4 698 246 281 57 19 chr4 14823109 14823214 -140806906 - L1MA9 LINE L1 -14 6298 6190 4 698 635 327 47 12 chr4 14823341 14823656 -140806464 - L1MA9 LINE L1 -296 6001 5674 4 698 184 54 53 26 chr4 14823855 14823893 -140806227 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 4 698 632 191 52 30 chr4 14823901 14824036 -140806084 - B1_Mus1 SINE Alu -8 140 3 4 698 21 0 0 0 chr4 14824489 14824510 -140805610 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 647 242 16 0 chr4 14824787 14824911 -140805209 + RSINE1 SINE B4 4 129 -36 4 698 321 26 0 0 chr4 14824920 14824958 -140805162 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 698 23 0 0 0 chr4 14825071 14825094 -140805026 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 186 363 120 19 chr4 14826316 14826532 -140803588 - L4 LINE RTE -1025 1004 767 4 698 216 0 0 0 chr4 14826532 14826556 -140803564 + (T)n Simple_repeat Simple_repeat 1 24 0 4 698 198 0 0 0 chr4 14829467 14829489 -140800631 + (A)n Simple_repeat Simple_repeat 1 22 0 4 698 600 305 127 15 chr4 14830225 14830686 -140799434 - MER68 LTR ERVL 0 607 1 4 698 21 0 0 0 chr4 14831281 14831302 -140798818 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 285 162 0 0 chr4 14832774 14832842 -140797278 + CT-rich Low_complexity Low_complexity 1 68 0 4 698 1106 122 0 6 chr4 14832842 14833023 -140797097 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 4 698 30 27 0 0 chr4 14834724 14834761 -140795359 + AT_rich Low_complexity Low_complexity 1 37 0 4 698 248 350 50 9 chr4 14835252 14835412 -140794708 + MLT1J1 LTR MaLR 81 284 -228 4 698 269 313 0 0 chr4 14835884 14835951 -140794169 + B3A SINE B2 2 68 -130 4 698 217 330 0 0 chr4 14835959 14836053 -140794067 + (CACAG)n Simple_repeat Simple_repeat 3 96 0 4 698 227 299 149 0 chr4 14836053 14836140 -140793980 + B3 SINE B2 51 150 -66 4 698 573 15 0 0 chr4 14836153 14836219 -140793901 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 698 7369 50 17 11 chr4 14836572 14837634 -140792486 - MusHAL1 LINE L1 -17 2695 1628 4 698 445 231 26 53 chr4 14839683 14839797 -140790323 - PB1D10 SINE Alu -1 116 6 4 698 572 229 235 0 chr4 14840019 14840185 -140789935 - B3 SINE B2 -9 207 3 4 698 183 42 0 0 chr4 14841575 14841599 -140788521 + (T)n Simple_repeat Simple_repeat 1 24 0 4 698 1767 244 47 49 chr4 14842865 14843373 -140786747 - Lx5 LINE L1 -3 7047 6541 4 698 262 140 0 23 chr4 14843373 14843417 -140786703 - RLTR31_Mur LTR ERVK 0 553 511 4 698 2024 233 53 43 chr4 14843410 14844302 -140785818 - RLTR31_Mur LTR ERVK -73 619 1 4 698 332 130 0 18 chr4 14844308 14844363 -140785757 - Lx5 LINE L1 -520 6530 6477 4 698 9634 168 85 21 chr4 14844347 14846907 -140783213 - Lx5 LINE L1 -763 6287 3546 4 698 774 162 42 7 chr4 14847926 14848069 -140782051 + B1_Mur1 SINE Alu 1 148 -1 4 698 202 146 0 24 chr4 14848070 14848112 -140782008 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 698 259 158 66 0 chr4 14848128 14848204 -140781916 + T-rich Low_complexity Low_complexity 3 83 0 5 698 309 138 11 16 chr4 14848219 14848281 -140781839 - B2_Mm2 SINE B2 -102 114 50 5 698 228 233 46 11 chr4 14848281 14848368 -140781752 + (CTCTG)n Simple_repeat Simple_repeat 3 92 0 5 698 1090 108 18 0 chr4 14848369 14848536 -140781584 - B2_Mm1t SINE B2 -14 179 10 5 698 32 43 0 0 chr4 14848539 14848585 -140781535 + AT_rich Low_complexity Low_complexity 1 46 0 5 698 1598 47 0 0 chr4 14848738 14848931 -140781189 + B2_Mm1t SINE B2 1 193 0 5 698 875 56 0 31 chr4 14848936 14849065 -140781055 + L1Md_T LINE L1 6456 6580 -2 5 698 549 72 0 0 chr4 14849453 14849536 -140780584 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 698 425 270 72 14 chr4 14849541 14849680 -140780440 - RSINE1 SINE B4 -18 147 1 5 698 201 121 0 0 chr4 14849993 14850026 -140780094 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 698 30 45 0 0 chr4 14850278 14850322 -140779798 + AT_rich Low_complexity Low_complexity 1 44 0 5 698 2610 73 26 39 chr4 14850629 14851016 -140779104 - L1Md_F2 LINE L1 -1 6581 6200 5 698 2051 66 0 0 chr4 14851016 14851289 -140778831 + L1Md_F2 LINE L1 5866 6138 -444 5 698 1226 34 0 0 chr4 14851367 14851514 -140778606 - B1_Mm SINE Alu 0 147 1 5 698 1824 264 129 81 chr4 14852174 14852472 -140777648 - RCHARR1 DNA MER1_type 0 974 673 5 698 6123 94 40 11 chr4 14852472 14853367 -140776753 - Lx3C LINE L1 -8 6968 6048 5 698 1824 264 129 81 chr4 14853367 14853543 -140776577 - RCHARR1 DNA MER1_type -302 672 532 5 698 579 320 10 83 chr4 14853543 14853856 -140776264 - B4A SINE B4 0 292 3 5 698 1824 264 129 81 chr4 14853856 14853996 -140776124 - RCHARR1 DNA MER1_type -443 531 373 5 698 595 264 31 71 chr4 14853996 14854192 -140775928 - B3A SINE B2 -10 188 1 5 698 1824 264 129 81 chr4 14854192 14854502 -140775618 - RCHARR1 DNA MER1_type -602 372 4 5 698 33 43 0 0 chr4 14855017 14855064 -140775056 + AT_rich Low_complexity Low_complexity 1 47 0 5 698 396 200 0 0 chr4 14855613 14855698 -140774422 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 698 1313 96 0 0 chr4 14856067 14856254 -140773866 + B2_Mm2 SINE B2 2 188 -7 5 698 192 77 0 0 chr4 14856701 14856727 -140773393 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 5 698 495 0 0 0 chr4 14856728 14856783 -140773337 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 698 234 0 0 0 chr4 14856783 14856808 -140773312 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 698 415 220 232 37 chr4 14856955 14857186 -140772934 + MTEa LTR MaLR 18 328 -51 5 698 423 0 0 0 chr4 14857186 14857233 -140772887 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 698 415 200 284 24 chr4 14857233 14857269 -140772851 + MTEa LTR MaLR 329 371 -8 5 698 189 0 0 0 chr4 14857623 14857644 -140772476 + (CCCCG)n Simple_repeat Simple_repeat 4 24 0 5 698 26 88 0 0 chr4 14857653 14857721 -140772399 + GC_rich Low_complexity Low_complexity 1 68 0 5 698 36 87 0 0 chr4 14857733 14857825 -140772295 + GC_rich Low_complexity Low_complexity 1 92 0 5 698 275 275 12 36 chr4 14858571 14858654 -140771466 - ID4_ SINE ID -2 81 1 5 698 500 250 153 11 chr4 14858684 14858874 -140771246 - ID_B1 SINE B4 -6 218 2 5 698 764 176 58 52 chr4 14860595 14860769 -140769351 + URR1B DNA MER1_type 51 225 0 5 698 1232 127 61 5 chr4 14861716 14861930 -140768190 - URR1A DNA MER1_type 0 226 1 5 698 416 277 84 8 chr4 14862191 14862322 -140767798 - B1F1 SINE Alu -5 144 4 5 698 367 167 114 45 chr4 14862553 14862641 -140767479 - PB1D10 SINE Alu -3 114 21 5 698 210 247 186 12 chr4 14862572 14862658 -140767462 - ID_B1 SINE B4 -45 179 79 5 698 270 322 60 17 chr4 14864181 14864298 -140765822 + B1F SINE Alu 1 122 -27 5 698 489 196 0 136 chr4 14864310 14864428 -140765692 + RSINE1 SINE B4 64 165 0 5 698 26 0 0 0 chr4 14864442 14864468 -140765652 + AT_rich Low_complexity Low_complexity 1 26 0 5 698 287 25 25 0 chr4 14865765 14865805 -140764315 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 698 21 0 0 0 chr4 14865945 14865966 -140764154 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 387 0 0 0 chr4 14866789 14866832 -140763288 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 698 351 0 0 0 chr4 14866832 14866870 -140763250 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 698 387 0 0 0 chr4 14867341 14867384 -140762736 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 698 1562 303 44 94 chr4 14867739 14868640 -140761480 - Lx8 LINE L1 -147 7326 6471 5 698 1533 59 10 5 chr4 14868652 14868855 -140761265 + L1_Mus1 LINE L1 6354 6557 -10 5 698 290 26 0 25 chr4 14868855 14868895 -140761225 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 698 312 306 9 0 chr4 14868896 14869004 -140761116 - Lx8 LINE L1 -1075 6398 6290 5 698 371 240 53 80 chr4 14869005 14869118 -140761002 - PB1D7 SINE Alu -27 122 13 5 698 310 345 0 63 chr4 14869118 14869131 -140760989 - ID_B1 SINE B4 -25 198 81 5 698 495 45 0 0 chr4 14869230 14869296 -140760824 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 698 243 0 0 0 chr4 14869659 14869686 -140760434 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 698 595 259 109 3 chr4 14869912 14870195 -140759925 - L1MEf LINE L1 -1099 5047 4735 5 698 8415 15 0 0 chr4 14870198 14871194 -140758926 - L1Md_A LINE L1 0 6582 5587 5 698 336 281 44 35 chr4 14871204 14871407 -140758713 - L1MEf LINE L1 -1400 4746 4542 5 698 1008 120 7 0 chr4 14871419 14871561 -140758559 + B1_Mur4 SINE Alu 1 143 -7 5 698 346 302 41 17 chr4 14871777 14871949 -140758171 - HAL1 LINE L1 -776 1731 1556 5 698 768 249 18 50 chr4 14872118 14872338 -140757782 - B3 SINE B2 -3 213 1 5 698 589 310 151 15 chr4 14872338 14872790 -140757330 - L1MEf LINE L1 -3167 2979 2465 5 698 322 243 126 12 chr4 14873231 14873485 -140756635 - L1MEf LINE L1 -4077 2165 1883 5 698 432 0 0 0 chr4 14873530 14873578 -140756542 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 698 240 300 78 7 chr4 14873680 14873821 -140756299 - L1MEf LINE L1 -4552 1690 1540 5 698 1130 151 97 5 chr4 14874012 14874219 -140755901 - URR1A DNA MER1_type 0 226 1 5 698 22 35 0 0 chr4 14874549 14874578 -140755542 + AT_rich Low_complexity Low_complexity 1 29 0 5 698 22 35 0 0 chr4 14874761 14874790 -140755330 + AT_rich Low_complexity Low_complexity 1 29 0 5 698 370 324 59 0 chr4 14874920 14875056 -140755064 - L1M5 LINE L1 -1104 5042 4899 5 698 1373 75 10 36 chr4 14875114 14875308 -140754812 - B2_Mm1t SINE B2 -4 189 1 5 698 24 0 0 0 chr4 14875402 14875426 -140754694 + AT_rich Low_complexity Low_complexity 1 24 0 5 698 223 339 147 12 chr4 14875459 14875629 -140754491 + MIRb SINE MIR 22 214 -54 5 698 289 147 78 26 chr4 14875729 14875806 -140754314 - Lx3C LINE L1 -3 6973 6893 5 698 4218 160 9 45 chr4 14875804 14876698 -140753422 - L1_Mur2 LINE L1 -27 5850 4989 5 698 3590 138 23 7 chr4 14876695 14877700 -140752420 - L1VL4 LINE L1 -2015 1544 525 5 698 1470 70 0 5 chr4 14878223 14878423 -140751697 - L1_Mus2 LINE L1 0 6566 6368 5 698 1571 58 0 0 chr4 14878423 14878631 -140751489 + L1_Mus2 LINE L1 5957 6164 -402 5 698 253 233 66 16 chr4 14878703 14878764 -140751356 + B4A SINE B4 41 104 -188 5 698 287 292 22 22 chr4 14878805 14878896 -140751224 + B4A SINE B4 186 276 -16 5 698 333 0 0 0 chr4 14879050 14879087 -140751033 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 698 596 287 22 7 chr4 14879089 14879226 -140750894 - RSINE1 SINE B4 -13 152 14 5 698 235 195 80 68 chr4 14881029 14881117 -140749003 - RLTR22_Mur LTR ERVK -452 1396 1308 5 698 1141 120 130 0 chr4 14882526 14882726 -140747394 + URR1A DNA MER1_type 1 226 0 5 698 303 140 0 0 chr4 14884252 14884302 -140745818 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 698 22 0 0 0 chr4 14886104 14886126 -140743994 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 26 0 0 0 chr4 14886146 14886172 -140743948 + AT_rich Low_complexity Low_complexity 1 26 0 5 698 1933 128 127 9 chr4 14886383 14886729 -140743391 - ORR1B1 LTR MaLR -7 387 1 5 698 249 270 63 0 chr4 14887000 14887063 -140743057 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 5 698 750 274 48 11 chr4 14887659 14887847 -140742273 - B3 SINE B2 -21 195 1 5 698 22 0 0 0 chr4 14888314 14888336 -140741784 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 265 358 21 28 chr4 14888449 14888590 -140741530 + Charlie4z DNA MER1_type 14 153 -14 5 698 229 196 0 73 chr4 14888776 14888831 -140741289 - YREP_Mm Unknown Unknown -1510 302 252 5 698 323 273 33 22 chr4 14888788 14888878 -140741242 + PB1D10 SINE Alu 25 115 -2 5 698 275 0 29 0 chr4 14889465 14889500 -140740620 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 698 396 0 0 0 chr4 14889781 14889825 -140740295 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 698 594 259 35 21 chr4 14889829 14889971 -140740149 - RSINE1 SINE B4 -19 146 3 5 698 360 0 0 0 chr4 14891422 14891462 -140738658 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 698 244 300 33 0 chr4 14891463 14891523 -140738597 - ID4_ SINE ID -13 70 9 5 698 324 288 0 94 chr4 14891531 14891669 -140738451 - PB1 SINE Alu -2 125 1 5 698 1273 129 0 22 chr4 14892721 14892943 -140737177 - L1_Mur2 LINE L1 -1571 4306 4090 5 698 2114 187 30 16 chr4 14893630 14894064 -140736056 - RLTR11A2 LTR ERVK 0 527 88 5 698 716 196 29 22 chr4 14894793 14894929 -140735191 - RLTR11A2 LTR ERVK -390 137 1 5 698 1381 249 69 23 chr4 14894984 14895334 -140734786 + MTE2b LTR MaLR 1 366 -13 5 698 1610 166 44 98 chr4 14895722 14896110 -140734010 + ORR1C2 LTR MaLR 1 367 -17 5 698 270 273 61 0 chr4 14896199 14896265 -140733855 + ID SINE ID 5 74 -150 5 698 381 43 0 0 chr4 14896265 14896312 -140733808 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 698 2027 154 2 121 chr4 14896948 14897368 -140732752 - ORR1B1 LTR MaLR 0 394 25 5 698 2166 110 3 6 chr4 14897400 14897712 -140732408 + RLTR10E LTR ERVK 1 311 0 5 698 458 332 53 49 chr4 14898427 14898690 -140731430 + MLT1H LTR MaLR 1 264 -285 5 698 455 327 61 56 chr4 14898691 14898797 -140731323 - MER58A DNA MER1_type -9 215 102 5 698 943 151 204 0 chr4 14898797 14898983 -140731137 - URR1A DNA MER1_type 0 226 3 6 698 455 327 61 56 chr4 14898983 14899090 -140731030 - MER58A DNA MER1_type -123 101 1 5 698 1498 273 41 32 chr4 14899369 14899811 -140730309 - Lx6 LINE L1 -1 7459 7014 6 698 217 380 102 0 chr4 14900256 14900364 -140729756 + MIRb SINE MIR 60 178 -90 6 698 657 38 0 0 chr4 14900827 14900907 -140729213 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 6 698 204 40 0 0 chr4 14901035 14901060 -140729060 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 698 224 245 0 19 chr4 14901553 14901607 -140728513 + MIRc SINE MIR 106 158 -110 6 698 306 94 0 0 chr4 14902866 14902875 -140727245 + (TC)n Simple_repeat Simple_repeat 2 10 0 6 698 1430 115 0 13 chr4 14902875 14903104 -140727016 + Lx LINE L1 6422 6647 -7 6 698 306 94 0 0 chr4 14903104 14903147 -140726973 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 698 657 0 0 0 chr4 14904686 14904759 -140725361 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 6 698 578 176 8 0 chr4 14905174 14905293 -140724827 + GA-rich Low_complexity Low_complexity 1 120 0 6 698 564 15 0 0 chr4 14905942 14906007 -140724113 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 6 698 416 275 32 46 chr4 14906128 14906345 -140723775 + RLTR42-int LTR ERVK 1175 1388 -4134 6 698 202 254 14 40 chr4 14906651 14906725 -140723395 + CT-rich Low_complexity Low_complexity 4 75 0 6 698 29651 91 11 2 chr4 14906927 14911515 -140718605 - L1_Mus1 LINE L1 0 6567 1929 6 698 2832 25 6 3 chr4 14911515 14911841 -140718279 + IAPLTR2b LTR ERVK 1 327 0 6 698 29651 138 52 11 chr4 14911841 14913482 -140716638 - L1_Mus1 LINE L1 -3955 1928 226 6 698 26 0 0 0 chr4 14913927 14913953 -140716167 + AT_rich Low_complexity Low_complexity 1 26 0 6 698 1867 76 0 0 chr4 14914016 14914273 -140715847 - L1_Mus1 LINE L1 0 6567 6327 6 698 1284 82 0 0 chr4 14914273 14914443 -140715677 + L1_Mus1 LINE L1 6145 6314 -253 6 698 378 259 0 45 chr4 14914555 14914644 -140715476 - 5S rRNA rRNA -33 88 4 6 698 603 104 0 0 chr4 14914679 14914785 -140715335 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 6 698 198 0 0 0 chr4 14914826 14914848 -140715272 + (CATG)n Simple_repeat Simple_repeat 1 22 0 6 698 410 370 19 76 chr4 14914859 14915017 -140715103 - RSINE1 SINE B4 -16 149 1 6 698 183 139 0 0 chr4 14915580 14915616 -140714504 + (T)n Simple_repeat Simple_repeat 1 36 0 6 698 1251 81 0 0 chr4 14916796 14916956 -140713164 + B2_Mm2 SINE B2 2 161 -34 6 698 180 0 0 0 chr4 14916956 14916976 -140713144 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 698 29 0 0 0 chr4 14916978 14917007 -140713113 + AT_rich Low_complexity Low_complexity 1 29 0 6 698 3561 190 45 91 chr4 14917800 14918897 -140711223 + L1_Mur3 LINE L1 564 1601 -4285 6 698 432 349 55 38 chr4 14919052 14919290 -140710830 + RMER10B LTR ERVL 157 398 0 6 698 4032 130 43 17 chr4 14919292 14919593 -140710527 + L1_Mur3 LINE L1 1604 1909 -3971 6 698 222 37 0 0 chr4 14919593 14919620 -140710500 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 6 698 4032 130 43 17 chr4 14919620 14920133 -140709987 + L1_Mur3 LINE L1 1910 2438 -3442 6 698 2396 142 66 0 chr4 14920133 14920543 -140709577 + BGLII_A LTR ERVK 7 443 -2 6 698 729 309 58 3 chr4 14921540 14921917 -140708203 + MYSERV6-int LTR ERVK 482 879 -8080 6 698 738 47 75 0 chr4 14921919 14922025 -140708095 + Lx2A LINE L1 5635 5748 -1260 6 698 248 0 31 0 chr4 14922066 14922098 -140708022 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 698 354 208 26 0 chr4 14922099 14922176 -140707944 + Lx6 LINE L1 2467 2545 -3335 6 698 242 202 22 22 chr4 14922194 14922276 -140707844 + A-rich Low_complexity Low_complexity 1 82 0 6 698 1193 92 81 0 chr4 14922276 14922450 -140707670 + B2_Mm1a SINE B2 1 188 -5 6 698 186 103 0 0 chr4 14922458 14922487 -140707633 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 6 698 5168 176 51 110 chr4 14922503 14924203 -140705917 + Lx6 LINE L1 2567 4165 -1715 6 698 360 0 0 0 chr4 14924206 14924246 -140705874 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 698 390 42 0 0 chr4 14924247 14924295 -140705825 + (TATG)n Simple_repeat Simple_repeat 3 50 0 6 698 5917 199 56 26 chr4 14924307 14926656 -140703464 + Lx6 LINE L1 4758 7178 -282 6 698 618 14 0 0 chr4 14926656 14926727 -140703393 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 698 5917 231 70 29 chr4 14926727 14926801 -140703319 + Lx6 LINE L1 7179 7275 -185 6 698 315 0 0 0 chr4 14926839 14926874 -140703246 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 698 298 348 58 35 chr4 14926961 14927220 -140702900 - HAL1 LINE L1 -1076 1431 1167 6 698 29 0 0 0 chr4 14927223 14927252 -140702868 + AT_rich Low_complexity Low_complexity 1 29 0 6 698 1140 118 14 9 chr4 14928452 14928666 -140701454 + Lx LINE L1 6439 6653 -1 6 698 328 289 147 60 chr4 14932678 14932862 -140697258 + ORR1E LTR MaLR 158 357 -2 6 698 208 283 98 10 chr4 14933051 14933145 -140696975 + MIR SINE MIR 98 208 0 6 698 15439 93 9 4 chr4 14933283 14936347 -140693773 - L1_Mus1 LINE L1 0 6567 3490 6 698 1076 103 29 6 chr4 14936408 14936583 -140693537 - L1_Mus3 LINE L1 -7 6631 6453 6 698 24 0 0 0 chr4 14936888 14936912 -140693208 + AT_rich Low_complexity Low_complexity 1 24 0 6 698 216 0 0 0 chr4 14937272 14937296 -140692824 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 6 698 1350 236 84 17 chr4 14937501 14937907 -140692213 - Lx8 LINE L1 -116 7357 6925 6 698 183 289 19 37 chr4 14937982 14938036 -140692084 + L2c LINE L2 3177 3229 -158 6 698 386 134 305 51 chr4 14938147 14938265 -140691855 - B2_Mm2 SINE B2 -1 194 47 6 698 1251 99 12 0 chr4 14938301 14938473 -140691647 - B2_Mm1t SINE B2 -17 176 3 6 698 387 41 0 0 chr4 14938770 14938819 -140691301 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 698 421 258 74 9 chr4 14938888 14939061 -140691059 + L1MA5 LINE L1 5600 5835 -465 6 698 1328 100 21 0 chr4 14939176 14939366 -140690754 - B2_Mm2 SINE B2 0 195 2 6 698 301 100 33 0 chr4 14940891 14940951 -140689169 + Lx9 LINE L1 7582 7643 -1 6 87 34388 6 0 0 chr4 14941382 14947730 -140682390 - L1Md_A LINE L1 0 6582 232 6 699 22 88 0 0 chr4 14947738 14947795 -140682325 + AT_rich Low_complexity Low_complexity 1 57 0 6 699 564 111 0 0 chr4 14947887 14947977 -140682143 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 699 300 109 27 147 chr4 14947977 14948052 -140682068 - Lx9 LINE L1 -168 7476 7411 6 699 910 139 156 14 chr4 14948784 14949002 -140681118 + Lx4A LINE L1 6808 7056 -2 6 699 240 143 0 0 chr4 14949005 14949047 -140681073 + (CAA)n Simple_repeat Simple_repeat 1 42 0 6 699 24 77 0 0 chr4 14951804 14951856 -140678264 + AT_rich Low_complexity Low_complexity 1 52 0 6 699 252 100 0 0 chr4 14952348 14952388 -140677732 + (T)n Simple_repeat Simple_repeat 1 40 0 6 699 405 129 0 0 chr4 14952715 14952785 -140677335 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 699 803 293 82 15 chr4 14952791 14953058 -140677062 - B4A SINE B4 -6 286 2 6 699 367 333 15 15 chr4 14953458 14953592 -140676528 + MLT1A LTR MaLR 19 152 -222 6 699 282 366 0 93 chr4 14953702 14953895 -140676225 + LTR16B2 LTR ERVL 274 448 -14 6 699 1121 7 0 21 chr4 14954716 14954856 -140675264 + L1Md_F2 LINE L1 6434 6570 -12 6 699 771 220 7 0 chr4 14954908 14955049 -140675071 + B1_Mus1 SINE Alu 1 142 -6 6 699 1253 328 52 24 chr4 14956857 14957485 -140672635 + Lx8 LINE L1 6826 7471 -2 6 699 228 346 75 106 chr4 14958844 14959203 -140670917 - ORR1E LTR MaLR -8 351 4 6 699 1407 196 137 135 chr4 14959311 14959843 -140670277 + MT2A LTR ERVL 1 533 0 6 699 1218 56 39 0 chr4 14960096 14960274 -140669846 + L1_Mus1 LINE L1 5862 6046 -521 6 699 6429 95 30 18 chr4 14960377 14960830 -140669290 + Lx3B LINE L1 5277 5737 -149 6 699 3368 35 5 0 chr4 14960830 14961224 -140668896 - MTA_Mm LTR MaLR 0 396 1 6 699 6429 115 65 30 chr4 14961224 14962227 -140667893 + Lx3B LINE L1 5735 6776 -197 6 699 2953 22 0 116 chr4 14962651 14963064 -140667056 + RLTR10B2 LTR ERVK 1 365 0 6 699 342 0 0 0 chr4 14963190 14963228 -140666892 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 699 2250 344 108 31 chr4 14963298 14964396 -140665724 - MTE-int LTR MaLR -28 1552 370 6 699 507 299 71 12 chr4 14964419 14964588 -140665532 - MTE-int LTR MaLR -1400 180 2 6 699 234 0 0 0 chr4 14964982 14965008 -140665112 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6 699 351 0 0 0 chr4 14965573 14965612 -140664508 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 699 545 152 86 0 chr4 14965821 14965926 -140664194 + ORR1A2 LTR MaLR 1 114 -213 6 699 260 305 28 0 chr4 14966119 14966209 -140663911 - ID4 SINE ID -49 103 12 6 699 2402 105 0 0 chr4 14966798 14967123 -140662997 - ORR1A2 LTR MaLR -2 325 1 6 699 2276 106 15 6 chr4 14967477 14967801 -140662319 + ORR1A2 LTR MaLR 1 327 0 6 699 365 241 23 0 chr4 14968301 14968388 -140661732 - PB1D10 SINE Alu -26 91 3 6 699 618 248 58 27 chr4 14969496 14969720 -140660400 + Lx4B LINE L1 6807 7037 -21 6 699 23 0 0 0 chr4 14970702 14970725 -140659395 + AT_rich Low_complexity Low_complexity 1 23 0 6 699 724 220 50 44 chr4 14970861 14971042 -140659078 - B3A SINE B2 -16 182 1 6 699 1029 318 19 66 chr4 14973427 14973804 -140656316 - ORR1E LTR MaLR 0 359 1 6 699 235 307 80 0 chr4 14973827 14973902 -140656218 - ID4 SINE ID 0 83 3 6 699 1958 206 1 224 chr4 14974351 14975207 -140654913 - RMER1A Other Other -352 678 14 6 699 393 279 41 0 chr4 14975209 14975331 -140654789 - RMER1B Other Other -559 507 381 6 699 3006 165 62 16 chr4 14975345 14975912 -140654208 + RLTR17 LTR ERVK 100 692 0 6 699 1110 292 60 20 chr4 14975917 14976316 -140653804 - RMER1B Other Other -645 421 7 6 699 1453 124 34 26 chr4 14976402 14976667 -140653453 + RLTR9E LTR ERVK 143 409 0 6 699 5598 41 1 7 chr4 14976774 14977458 -140652662 - L1Md_F2 LINE L1 -16 6566 5887 6 699 1350 325 39 62 chr4 14977620 14978433 -140651687 - Lx8 LINE L1 0 7473 6679 7 699 775 280 14 14 chr4 14980796 14981013 -140649107 + ID_B1 SINE B4 1 217 -7 7 699 33868 36 0 0 chr4 14981590 14987253 -140642867 + L1Md_T LINE L1 1 5589 -297 7 699 8999 6 0 0 chr4 14987253 14988248 -140641872 + L1Md_T LINE L1 5590 6584 -1 7 699 332 274 152 8 chr4 14988863 14988988 -140641132 + MER5A1 DNA MER1_type 21 163 -3 7 699 32 0 0 0 chr4 14990205 14990237 -140639883 + AT_rich Low_complexity Low_complexity 1 32 0 7 699 21 0 0 0 chr4 14990632 14990653 -140639467 + AT_rich Low_complexity Low_complexity 1 21 0 7 699 310 341 0 11 chr4 14992920 14993009 -140637111 + MIR SINE MIR 10 97 -165 7 699 28 29 0 0 chr4 14993104 14993139 -140636981 + AT_rich Low_complexity Low_complexity 1 35 0 7 699 269 289 0 110 chr4 14993675 14993784 -140636336 + MT2B LTR ERVL 160 256 -345 7 699 721 250 0 0 chr4 14993686 14993830 -140636290 + B1_Mur2 SINE Alu 6 149 0 7 699 2410 185 69 84 chr4 14993947 14994567 -140635553 + RMER19C LTR ERVK 1 611 0 7 699 2054 53 0 4 chr4 14995435 14995732 -140634388 - L1Md_F2 LINE L1 0 6582 6321 7 699 203 136 0 83 chr4 14995732 14995745 -140634375 + T-rich Low_complexity Low_complexity 1 11 0 7 699 1050 84 0 0 chr4 14995907 14996038 -140634082 - B1_Mus1 SINE Alu -15 133 3 7 699 21 0 0 0 chr4 14996465 14996486 -140633634 + AT_rich Low_complexity Low_complexity 1 21 0 7 699 514 280 131 83 chr4 14997632 14997982 -140632138 + MLT1C LTR MaLR 95 461 -6 7 699 470 192 10 58 chr4 14998049 14998164 -140631956 + MLT1C LTR MaLR 293 384 -6 7 699 9005 7 0 0 chr4 14998648 15000000 -140630120 + L1Md_A LINE L1 4832 6183 -399 7 699 3417 5 0 0 chr4 15000000 15000399 -140629721 + L1Md_A LINE L1 6184 6582 0 1 699 4308 35 29 0 chr4 15000723 15001239 -140628881 + L1Md_T LINE L1 6052 6582 0 2 699 1307 85 0 17 chr4 15001616 15001795 -140628325 + B2_Mm2 SINE B2 2 177 -18 3 699 24 0 0 0 chr4 15001795 15001819 -140628301 + AT_rich Low_complexity Low_complexity 1 24 0 4 699 2294 233 76 5 chr4 15001935 15002517 -140627603 + Lx5 LINE L1 6425 7047 -3 5 699 9989 112 37 37 chr4 15002691 15005622 -140624498 + L1VL2 LINE L1 365 3279 -2598 6 699 2988 115 28 7 chr4 15005706 15006171 -140623949 + Lx3A LINE L1 6504 6978 -3 7 699 210 395 0 11 chr4 15006996 15007083 -140623037 - MER5A DNA MER1_type 0 189 104 8 699 207 0 0 0 chr4 15007604 15007627 -140622493 + (TAA)n Simple_repeat Simple_repeat 2 24 0 9 699 234 226 0 101 chr4 15008147 15008216 -140621904 - MTEb LTR MaLR -4 375 314 1 699 3882 174 102 34 chr4 15008192 15008964 -140621156 - RMER19B LTR ERVK -77 825 1 1 699 299 351 56 43 chr4 15009725 15009886 -140620234 - MER5C1 DNA MER1_type -98 165 3 1 699 585 353 28 47 chr4 15011397 15011650 -140618470 + LTR83 LTR ERVL 4 251 -529 1 699 229 363 33 42 chr4 15011879 15012092 -140618028 + LTR83 LTR ERVL 556 766 -14 1 699 367 314 16 62 chr4 15012109 15012238 -140617882 + ID_B1 SINE B4 81 203 -21 1 699 13273 84 6 1 chr4 15012583 15015385 -140614735 + L1_Mus1 LINE L1 409 3223 -2660 1 699 8754 85 6 3 chr4 15015383 15017319 -140612801 + L1_Mus1 LINE L1 4624 6567 0 1 699 413 216 17 0 chr4 15018431 15018547 -140611573 + Lx9 LINE L1 7508 7625 -19 1 699 1102 270 66 77 chr4 15018637 15019014 -140611106 + MTE2a LTR MaLR 1 373 -6 1 699 378 0 0 0 chr4 15019153 15019195 -140610925 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 699 312 323 0 50 chr4 15019229 15019330 -140610790 + RSINE1 SINE B4 1 96 -69 1 699 438 53 0 0 chr4 15019343 15019400 -140610720 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2 699 250 292 99 28 chr4 15021459 15021521 -140608599 + MIR SINE MIR 110 174 -88 2 699 741 224 7 7 chr4 15021521 15021669 -140608451 - B1_Mur1 SINE Alu 0 149 2 2 699 250 292 99 28 chr4 15021669 15021747 -140608373 + MIR SINE MIR 175 259 -3 2 699 4486 117 15 10 chr4 15021816 15022499 -140607621 + Lx LINE L1 5963 6648 -6 2 699 4192 43 2 8 chr4 15022749 15023268 -140606852 + L1Md_F3 LINE L1 6069 6584 0 2 699 206 229 16 0 chr4 15023664 15023725 -140606395 + A-rich Low_complexity Low_complexity 3 64 0 2 699 540 313 36 0 chr4 15023729 15023924 -140606196 - Lx7 LINE L1 -366 7330 7129 2 699 185 392 0 0 chr4 15023997 15024076 -140606044 + L2b LINE L2 3291 3369 -6 2 699 848 309 56 14 chr4 15024667 15025022 -140605098 + Lx8 LINE L1 6960 7329 -144 2 699 232 250 0 0 chr4 15026056 15026124 -140603996 + A-rich Low_complexity Low_complexity 1 68 0 2 699 405 292 17 0 chr4 15027994 15028114 -140602006 - MLT1A1 LTR MaLR 0 408 287 3 699 362 286 67 0 chr4 15028114 15028233 -140601887 - MLT1A1 LTR MaLR -188 177 51 3 699 7195 93 15 1 chr4 15029904 15031164 -140598956 + L1_Mus4 LINE L1 5351 6629 -7 3 699 2661 157 227 4 chr4 15031426 15031989 -140598131 + RMER6C LTR ERVK 1 689 -1 3 699 270 305 80 112 chr4 15032656 15032844 -140597276 + MLT1K LTR MaLR 404 585 -10 3 699 1764 48 4 13 chr4 15033001 15033231 -140596889 - L1Md_F2 LINE L1 0 6582 6355 3 699 4558 29 0 0 chr4 15033231 15033785 -140596335 + L1Md_F2 LINE L1 5772 6325 -257 3 699 261 0 0 0 chr4 15034659 15034688 -140595432 + (A)n Simple_repeat Simple_repeat 1 29 0 3 699 24 32 0 0 chr4 15035390 15035421 -140594699 + AT_rich Low_complexity Low_complexity 1 31 0 3 699 1475 38 49 0 chr4 15035952 15036135 -140593985 - B2_Mm2 SINE B2 -2 193 2 3 699 630 192 87 18 chr4 15039762 15039955 -140590165 - Lx4B LINE L1 -17 7041 6770 3 699 251 143 0 0 chr4 15039953 15039995 -140590125 - Lx4B LINE L1 -266 6792 6751 3 699 198 0 0 0 chr4 15040344 15040366 -140589754 + (T)n Simple_repeat Simple_repeat 1 22 0 3 699 558 77 13 0 chr4 15040366 15040444 -140589676 - B1_Mm SINE Alu 0 147 69 4 699 267 255 50 0 chr4 15040545 15040614 -140589506 - ID2 SINE ID -62 90 19 4 699 1519 111 0 115 chr4 15040626 15040921 -140589199 - L1Md_F2 LINE L1 0 6582 6322 4 699 415 195 34 22 chr4 15040921 15041020 -140589100 - PB1D9 SINE Alu -6 114 13 4 699 518 106 0 45 chr4 15041162 15041251 -140588869 - B2_Mm2 SINE B2 -9 186 102 4 699 261 287 104 21 chr4 15041584 15041680 -140588440 + PB1D10 SINE Alu 1 104 -13 4 699 24 0 0 0 chr4 15042262 15042286 -140587834 + AT_rich Low_complexity Low_complexity 1 24 0 4 699 198 0 0 0 chr4 15042888 15042910 -140587210 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 699 287 274 65 9 chr4 15043020 15043127 -140586993 - Lx8 LINE L1 -641 6832 6720 4 699 23 0 0 0 chr4 15043440 15043463 -140586657 + AT_rich Low_complexity Low_complexity 1 23 0 4 699 32400 81 14 6 chr4 15043611 15049619 -140580501 - L1Md_F2 LINE L1 -13 6569 512 5 699 240 376 110 51 chr4 15049871 15050126 -140579994 - L2b LINE L2 0 3375 3106 5 699 704 191 13 0 chr4 15051238 15051390 -140578730 + T-rich Low_complexity Low_complexity 2 155 0 5 699 1162 64 0 0 chr4 15051392 15051532 -140578588 - B1_Mus2 SINE Alu -6 141 2 5 699 396 303 61 34 chr4 15052047 15052344 -140577776 + L1MCa LINE L1 1438 1742 -4766 5 699 748 48 19 0 chr4 15052624 15052729 -140577391 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 699 1017 233 132 48 chr4 15052734 15053090 -140577030 + MTD LTR MaLR 34 419 0 5 699 227 171 24 0 chr4 15053090 15053129 -140576991 - B4 SINE B4 -251 41 2 5 699 1341 234 110 21 chr4 15053378 15053750 -140576370 + MTD LTR MaLR 1 405 -14 5 699 5309 68 3 18 chr4 15053795 15054501 -140575619 + L1Md_F2 LINE L1 5879 6573 -9 5 699 267 103 0 0 chr4 15054924 15054963 -140575157 + (T)n Simple_repeat Simple_repeat 1 39 0 6 699 522 67 0 0 chr4 15055101 15055176 -140574944 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 699 962 90 6 0 chr4 15055373 15055529 -140574591 + (GA)n Simple_repeat Simple_repeat 2 158 0 6 699 323 267 34 0 chr4 15055533 15055619 -140574501 + MTD LTR MaLR 34 126 -295 6 699 208 280 89 25 chr4 15055715 15055820 -140574300 - MIRc SINE MIR -68 200 88 6 699 4852 33 2 0 chr4 15056074 15056647 -140573473 - L1Md_A LINE L1 0 6582 6009 6 699 186 377 14 0 chr4 15056824 15056893 -140573227 + MIR SINE MIR 116 185 -77 6 699 2018 189 44 5 chr4 15058210 15058615 -140571505 - MTC LTR MaLR 0 421 1 6 699 394 270 92 0 chr4 15059379 15059531 -140570589 + RLTR42-int LTR ERVK 4260 4425 -1097 6 699 423 0 0 0 chr4 15060085 15060132 -140569988 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 699 540 0 0 0 chr4 15060132 15060191 -140569929 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 699 26 50 0 0 chr4 15060397 15060437 -140569683 + AT_rich Low_complexity Low_complexity 1 40 0 7 699 303 346 165 18 chr4 15060859 15061077 -140569043 - MIR SINE MIR -8 254 5 7 699 441 0 0 0 chr4 15062241 15062290 -140567830 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 699 1232 307 66 65 chr4 15062481 15063189 -140566931 + Lx8 LINE L1 6529 7237 -236 7 699 495 167 0 0 chr4 15063321 15063411 -140566709 + (TG)n Simple_repeat Simple_repeat 2 91 0 7 699 334 304 128 12 chr4 15063473 15063637 -140566483 - MIRb SINE MIR -43 225 44 7 699 563 249 410 7 chr4 15064171 15064449 -140565671 + L1MA9 LINE L1 5886 6275 -37 7 699 22 70 0 0 chr4 15064496 15064539 -140565581 + AT_rich Low_complexity Low_complexity 1 43 0 7 699 253 329 0 12 chr4 15065196 15065276 -140564844 - MIRb SINE MIR -19 249 171 7 699 471 141 0 0 chr4 15067508 15067586 -140562534 + (A)n Simple_repeat Simple_repeat 1 78 0 8 699 372 324 34 49 chr4 15067707 15068035 -140562085 + L1ME1 LINE L1 5730 6052 -127 8 699 2372 237 46 38 chr4 15068062 15068667 -140561453 + RLTR18 LTR ERVK 1 610 -6 8 699 225 263 28 112 chr4 15069141 15069248 -140560872 + MLT1C LTR MaLR 1 98 -369 8 699 7069 75 30 4 chr4 15069248 15070256 -140559864 + L1_Mus3 LINE L1 5596 6629 -9 8 699 236 350 0 0 chr4 15072565 15072625 -140557495 + ID4 SINE ID 13 72 -11 8 700 315 0 0 0 chr4 15077196 15077231 -140552889 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 700 377 319 176 12 chr4 15078033 15078198 -140551922 + B3A SINE B2 3 194 -4 8 700 232 365 93 13 chr4 15078204 15078354 -140551766 + RSINE1 SINE B4 4 165 0 8 700 643 164 12 28 chr4 15078359 15078615 -140551505 + (CA)n Simple_repeat Simple_repeat 1 251 0 8 700 186 209 0 0 chr4 15078639 15078682 -140551438 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 700 1091 22 88 0 chr4 15078765 15078901 -140551219 - B1_Mus1 SINE Alu 0 148 1 9 700 1093 295 125 36 chr4 15079809 15080842 -140549278 - L1_Mur3 LINE L1 -1756 4384 3260 9 700 280 228 104 6 chr4 15080913 15081019 -140549101 + L1M2 LINE L1 4427 4544 -1599 9 700 281 125 18 0 chr4 15081030 15081086 -140549034 + (GA)n Simple_repeat Simple_repeat 1 57 0 9 700 474 301 134 5 chr4 15081086 15081473 -140548647 + L1M2 LINE L1 4557 4993 -1150 9 700 518 308 123 67 chr4 15081898 15082057 -140548063 + L1MA7 LINE L1 4959 5135 -745 9 700 318 50 0 0 chr4 15082057 15082097 -140548023 + (CAA)n Simple_repeat Simple_repeat 3 42 0 9 700 913 286 88 73 chr4 15082097 15082829 -140547291 + L1MA7 LINE L1 5136 5935 -356 9 700 897 69 0 0 chr4 15082834 15082964 -140547156 + (TC)n Simple_repeat Simple_repeat 1 130 0 9 700 710 279 19 0 chr4 15083144 15083298 -140546822 - B3A SINE B2 -41 157 1 9 700 671 323 79 34 chr4 15083362 15083628 -140546492 + B4A SINE B4 2 279 -13 9 700 294 29 0 0 chr4 15083935 15083970 -140546150 + (A)n Simple_repeat Simple_repeat 1 35 0 9 700 366 339 114 23 chr4 15084361 15084536 -140545584 + ORR1E LTR MaLR 1 191 -168 1 700 2101 185 21 3 chr4 15085018 15085397 -140544723 - ORR1B1 LTR MaLR -8 386 1 1 700 195 346 147 49 chr4 15085416 15085905 -140544215 + L2 LINE L2 2321 2857 -562 1 700 226 372 65 22 chr4 15086032 15086216 -140543904 + MIR SINE MIR 39 230 -32 1 700 639 151 0 19 chr4 15087708 15087816 -140542304 + BGLII LTR ERVK 316 421 0 1 700 324 111 0 0 chr4 15087943 15087997 -140542123 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 700 369 0 0 0 chr4 15090138 15090179 -140539941 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 700 2255 279 121 44 chr4 15090688 15091860 -140538260 + Lx9 LINE L1 6361 7622 -22 1 700 314 284 152 28 chr4 15092186 15092303 -140537817 + RSINE1 SINE B4 3 137 -28 1 700 504 0 0 0 chr4 15092303 15092359 -140537761 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 700 314 284 152 28 chr4 15092359 15092386 -140537734 + RSINE1 SINE B4 138 165 0 1 700 230 340 137 54 chr4 15093593 15093761 -140536359 + LTR16A1 LTR ERVL 26 207 -249 1 700 256 299 13 0 chr4 15094126 15094203 -140535917 + LTR16A1 LTR ERVL 379 456 0 1 700 201 304 29 0 chr4 15095198 15095267 -140534853 + MIRb SINE MIR 180 250 -18 1 700 2839 52 0 3 chr4 15095330 15095677 -140534443 + ORR1A1 LTR MaLR 1 346 0 1 700 231 289 120 22 chr4 15096438 15096530 -140533590 + ORR1D2 LTR MaLR 1 101 -269 1 700 958 270 54 100 chr4 15096566 15097095 -140533025 + RLTR12B LTR ERVK 1 524 -4 1 700 772 214 58 11 chr4 15097088 15097277 -140532843 + ORR1D2 LTR MaLR 173 370 0 1 700 26 0 0 0 chr4 15097291 15097317 -140532803 + AT_rich Low_complexity Low_complexity 1 26 0 1 700 588 164 0 0 chr4 15097348 15097482 -140532638 + CT-rich Low_complexity Low_complexity 2 135 0 1 700 459 0 0 0 chr4 15097482 15097533 -140532587 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 700 336 318 72 64 chr4 15098655 15098890 -140531230 + MLT1B LTR MaLR 7 243 -147 1 700 234 310 40 0 chr4 15098900 15099000 -140531120 + PB1D10 SINE Alu 5 108 -9 1 700 509 138 0 11 chr4 15100383 15100478 -140529642 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 700 4581 47 16 2 chr4 15101072 15101646 -140528474 - L1Md_F2 LINE L1 -3 6579 5998 1 700 1018 82 37 0 chr4 15102128 15102263 -140527857 + B1_Mus1 SINE Alu 2 141 -7 1 700 853 169 19 78 chr4 15102848 15103053 -140527067 - B2_Mm2 SINE B2 -1 194 2 1 700 305 256 13 13 chr4 15103404 15103483 -140526637 + GA-rich Low_complexity Low_complexity 1 79 0 1 700 917 144 6 0 chr4 15103483 15103643 -140526477 + (GAA)n Simple_repeat Simple_repeat 1 161 0 1 700 426 20 0 0 chr4 15103671 15103722 -140526398 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 700 486 0 0 0 chr4 15103800 15103854 -140526266 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 1 700 374 20 40 0 chr4 15103855 15103905 -140526215 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 1 700 287 93 0 0 chr4 15103905 15103948 -140526172 + (TTC)n Simple_repeat Simple_repeat 1 43 0 1 700 218 33 0 0 chr4 15103949 15103979 -140526141 - B3 SINE B2 -186 30 1 1 700 705 340 92 25 chr4 15105541 15105855 -140524265 - RMER15 LTR ERVL -3 572 238 1 700 1227 225 83 50 chr4 15106613 15106972 -140523148 + RMER10A LTR ERVL 1 371 -71 1 700 503 256 182 64 chr4 15106972 15107301 -140522819 - RLTR9A LTR ERVK 0 368 1 1 700 3121 86 94 9 chr4 15107554 15108083 -140522037 - RMER16-int LTR ERVK -1675 3731 3158 1 700 7713 128 28 49 chr4 15108080 15109190 -140520930 - RMER16-int LTR ERVK -2427 2979 1858 1 700 268 43 21 21 chr4 15109190 15109237 -140520883 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 700 1105 72 0 0 chr4 15109237 15109375 -140520745 - B1_Mm SINE Alu -9 138 1 1 700 7713 128 28 49 chr4 15109375 15109707 -140520413 - RMER16-int LTR ERVK -3549 1857 1568 1 700 452 230 159 50 chr4 15109862 15110148 -140519972 - RMER16-int LTR ERVK -4743 2663 2380 1 700 4729 146 88 47 chr4 15110350 15111536 -140518584 - RMER16-int LTR ERVK -5231 2175 255 1 700 773 228 168 66 chr4 15112020 15112354 -140517766 - RLTR9A LTR ERVK 0 368 1 1 700 186 43 0 0 chr4 15112632 15112655 -140517465 + (T)n Simple_repeat Simple_repeat 1 23 0 1 700 24 32 0 0 chr4 15113173 15113204 -140516916 + AT_rich Low_complexity Low_complexity 1 31 0 1 700 1103 224 153 22 chr4 15113636 15114001 -140516119 - MTD LTR MaLR -4 415 3 1 700 24 0 0 0 chr4 15114077 15114101 -140516019 + AT_rich Low_complexity Low_complexity 1 24 0 1 700 851 166 27 27 chr4 15114150 15114299 -140515821 + B1_Mur4 SINE Alu 1 149 -1 1 700 225 0 0 0 chr4 15114335 15114360 -140515760 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 700 747 283 92 62 chr4 15114551 15114984 -140515136 + L1MEg LINE L1 232 677 -5407 1 700 247 200 73 0 chr4 15115149 15115204 -140514916 - RMER21B LTR ERV1 -271 571 513 1 700 566 249 151 100 chr4 15115361 15115929 -140514191 - RMER17C-int LTR ERVK -35 3203 2607 1 700 34589 81 4 14 chr4 15116078 15120064 -140510056 + L1Md_F3 LINE L1 233 4180 -1703 1 700 1229 56 21 0 chr4 15120064 15120207 -140509913 - B1_Mm SINE Alu 0 147 2 1 700 34589 57 1 10 chr4 15120207 15121628 -140508492 + L1Md_F3 LINE L1 4181 5586 -297 1 700 8382 40 24 3 chr4 15121628 15122604 -140507516 + L1Md_F3 LINE L1 5587 6582 -2 1 700 1167 176 14 123 chr4 15122612 15122969 -140507151 - RLTR19-int LTR ERVK -2407 3730 3413 1 700 257 329 13 0 chr4 15123439 15123518 -140506602 + ID4 SINE ID 3 82 -1 1 700 257 247 11 34 chr4 15123521 15123609 -140506511 + GA-rich Low_complexity Low_complexity 4 89 0 1 700 372 365 59 72 chr4 15123918 15123958 -140506162 + MLT1G3 LTR MaLR 1 38 -557 1 700 3635 33 0 2 chr4 15123958 15124355 -140505765 - MTA_Mm LTR MaLR 0 396 1 1 700 372 355 63 72 chr4 15124355 15124642 -140505478 + MLT1G3 LTR MaLR 39 300 -295 1 700 3801 124 52 100 chr4 15124725 15125514 -140504606 - RMER17A LTR ERVK 0 751 1 1 700 554 264 82 0 chr4 15125604 15125812 -140504308 - L1_Mur3 LINE L1 -6649 1063 839 1 700 2764 118 30 2 chr4 15126670 15127077 -140503043 + Lx2 LINE L1 6570 6987 -10 1 700 544 244 0 73 chr4 15127184 15127321 -140502799 + B1_Mur1 SINE Alu 23 149 0 1 700 267 289 0 38 chr4 15127327 15127406 -140502714 + B3A SINE B2 2 77 -121 1 700 1307 264 14 65 chr4 15127412 15127780 -140502340 - ORR1D2-int LTR MaLR -1021 349 1 1 700 1348 260 79 0 chr4 15127781 15128123 -140501997 - ORR1D2 LTR MaLR -1 369 1 1 700 347 196 0 20 chr4 15129401 15129422 -140500698 + polypyrimidine Low_complexity Low_complexity 79 99 0 1 700 1055 134 0 6 chr4 15129422 15129602 -140500518 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 700 347 196 0 20 chr4 15129602 15129679 -140500441 + CT-rich Low_complexity Low_complexity 3 78 0 1 700 239 396 47 12 chr4 15130082 15130253 -140499867 - MIRb SINE MIR -49 219 43 1 700 22 0 0 0 chr4 15130641 15130663 -140499457 + AT_rich Low_complexity Low_complexity 1 22 0 1 700 321 47 0 0 chr4 15131970 15132013 -140498107 + (T)n Simple_repeat Simple_repeat 1 43 0 1 700 417 231 80 51 chr4 15132013 15132150 -140497970 + MER58A DNA MER1_type 63 203 -21 1 700 2094 153 116 6 chr4 15133635 15133990 -140496130 - ORR1B1 LTR MaLR 0 394 1 1 700 957 99 276 0 chr4 15134176 15134328 -140495792 + B2_Mm2 SINE B2 2 195 0 1 700 208 281 74 46 chr4 15135099 15135207 -140494913 + MER5A DNA MER1_type 77 187 -2 1 700 198 0 0 0 chr4 15135322 15135344 -140494776 + (A)n Simple_repeat Simple_repeat 1 22 0 1 700 798 170 198 0 chr4 15136764 15136899 -140493221 - URR1A DNA MER1_type -8 218 81 1 700 3295 66 0 10 chr4 15136899 15137299 -140492821 - MTA_Mm LTR MaLR 0 396 1 1 700 798 170 198 0 chr4 15137299 15137345 -140492775 - URR1A DNA MER1_type -146 80 3 1 700 1586 148 141 29 chr4 15137643 15137990 -140492130 - ORR1B1 LTR MaLR -8 386 1 1 700 32 0 0 0 chr4 15138110 15138142 -140491978 + AT_rich Low_complexity Low_complexity 1 32 0 1 700 517 322 65 119 chr4 15139176 15139733 -140490387 + RMER20B LTR ERVK 30 605 -22 1 700 1836 147 14 0 chr4 15139868 15140161 -140489959 - RMER20A LTR ERVK -219 297 1 1 700 533 15 15 0 chr4 15141044 15141110 -140489010 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 700 288 138 0 0 chr4 15141354 15141419 -140488701 + (A)n Simple_repeat Simple_repeat 1 65 0 1 700 1221 62 7 0 chr4 15141547 15141693 -140488427 + B1_Mus1 SINE Alu 2 148 0 1 700 369 177 0 0 chr4 15141702 15141781 -140488339 + A-rich Low_complexity Low_complexity 1 79 0 1 700 21 0 0 0 chr4 15142504 15142525 -140487595 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 308 361 40 34 chr4 15143012 15143187 -140486933 + MIR SINE MIR 46 221 -41 1 700 180 0 0 0 chr4 15145009 15145029 -140485091 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 700 871 205 181 36 chr4 15145345 15145404 -140484716 + L1MC1 LINE L1 5611 5699 -634 1 700 336 48 0 0 chr4 15145404 15145446 -140484674 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 700 871 205 181 36 chr4 15145446 15145690 -140484430 + L1MC1 LINE L1 5700 5957 -376 1 700 369 319 104 12 chr4 15145725 15145976 -140484144 + L1MC1 LINE L1 6051 6324 -9 1 700 277 340 39 0 chr4 15146327 15146430 -140483690 + ORR1E LTR MaLR 4 110 -249 1 700 1383 212 156 0 chr4 15146430 15146751 -140483369 + ORR1D1 LTR MaLR 1 371 -3 1 700 11421 149 15 120 chr4 15146751 15150955 -140479165 + L1VL2 LINE L1 361 4053 -1833 1 700 1372 24 0 6 chr4 15150955 15151117 -140479003 + B2_Mm1a SINE B2 2 163 -30 1 700 378 0 0 0 chr4 15151117 15151159 -140478961 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 700 11421 119 9 94 chr4 15151159 15151676 -140478444 + L1VL2 LINE L1 4046 4546 -1337 1 700 14308 138 16 14 chr4 15151664 15154154 -140475966 + Lx LINE L1 3452 5945 -709 1 700 261 317 61 0 chr4 15154163 15154245 -140475875 - ORR1E LTR MaLR -272 87 1 1 700 318 50 0 0 chr4 15154513 15154553 -140475567 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 700 349 397 59 15 chr4 15155560 15155762 -140474358 + L2 LINE L2 2851 3061 -358 1 700 1307 27 7 0 chr4 15156682 15156828 -140473292 + B1_Mm SINE Alu 1 147 0 1 700 225 0 0 0 chr4 15156828 15156853 -140473267 + (A)n Simple_repeat Simple_repeat 1 25 0 1 700 287 337 67 38 chr4 15158554 15158659 -140471461 - MLT1A1 LTR MaLR -297 111 4 1 700 476 229 48 0 chr4 15159308 15159413 -140470707 - MLT1A1 LTR MaLR 0 408 299 1 700 2071 170 46 11 chr4 15159668 15160076 -140470044 + ORR1B1 LTR MaLR 1 376 -18 2 700 3116 144 63 10 chr4 15161816 15162322 -140467798 + RMER16 LTR ERVK 1 533 0 2 700 7050 15 1 0 chr4 15163351 15164092 -140466028 - RLTR4_Mm LTR ERV1 0 742 1 2 700 1854 20 0 0 chr4 15164092 15164296 -140465824 - RLTR4_MM-int LTR ERV1 0 7601 7398 2 700 15591 26 3 0 chr4 15164277 15166060 -140464060 - RLTR4_MM-int LTR ERV1 -1899 5702 3915 2 700 28729 13 1 0 chr4 15166052 15169216 -140460904 - RLTR4_MM-int LTR ERV1 -4434 3167 1 2 700 6752 14 1 0 chr4 15169216 15169957 -140460163 - RLTR4_Mm LTR ERV1 0 742 1 2 700 5366 85 65 103 chr4 15170394 15171323 -140458797 - RLTR13B1 LTR ERVK 0 893 1 2 700 848 224 143 15 chr4 15171453 15171712 -140458408 + B4 SINE B4 1 292 0 2 700 2110 263 81 14 chr4 15173249 15173826 -140456294 - RCHARR1 DNA MER1_type -1 973 353 2 700 252 59 0 0 chr4 15173826 15173860 -140456260 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 700 2110 263 81 14 chr4 15173860 15174039 -140456081 - RCHARR1 DNA MER1_type -622 352 167 2 700 1229 234 84 46 chr4 15175097 15175939 -140454181 + L1_Mur3 LINE L1 719 1612 -4268 2 700 2913 190 111 4 chr4 15175939 15176614 -140453506 + RLTR25B LTR ERVK 1 747 -281 2 700 770 251 65 50 chr4 15177051 15177328 -140452792 - RLTR41 LTR ERV1 0 446 166 2 700 1273 255 25 75 chr4 15177378 15177562 -140452558 + Lx7 LINE L1 6455 6618 -1078 2 700 1092 69 14 0 chr4 15177562 15177706 -140452414 - B1_Mm SINE Alu 0 147 2 2 700 1273 255 25 75 chr4 15177706 15177881 -140452239 + Lx7 LINE L1 6619 6796 -900 2 700 1019 297 38 12 chr4 15177880 15178221 -140451899 + Lx7 LINE L1 7033 7382 -314 2 700 210 37 0 0 chr4 15178269 15178296 -140451824 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 700 227 244 13 0 chr4 15178736 15178814 -140451306 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 2 700 279 79 0 0 chr4 15178853 15178891 -140451229 + (TAG)n Simple_repeat Simple_repeat 1 38 0 2 700 210 37 0 0 chr4 15179014 15179041 -140451079 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2 700 500 211 35 9 chr4 15179418 15179533 -140450587 - MTD LTR MaLR 0 419 302 2 700 687 261 0 36 chr4 15179735 15179930 -140450190 + MER5A DNA MER1_type 2 189 0 2 700 361 280 39 31 chr4 15180339 15180468 -140449652 + RSINE1 SINE B4 6 135 -30 2 700 368 97 0 16 chr4 15180472 15180535 -140449585 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 700 5711 30 1 0 chr4 15180572 15181228 -140448892 + L1Md_F2 LINE L1 5913 6569 -13 2 700 2326 233 132 20 chr4 15182052 15182713 -140447407 - RMER19A LTR ERVK 0 737 3 2 700 709 266 58 5 chr4 15183075 15183264 -140446856 - ID_B1 SINE B4 -24 200 2 2 700 420 287 56 32 chr4 15184536 15184662 -140445458 + Ricksha_c DNA MuDR 366 494 -1554 2 700 652 122 6 147 chr4 15184789 15184948 -140445172 - RMER4A LTR ERVK 0 466 331 2 700 2628 141 97 8 chr4 15184948 15185036 -140445084 - RLTR20B2 LTR ERVK 0 560 470 2 700 501 17 0 0 chr4 15185036 15185094 -140445026 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 700 2628 141 97 8 chr4 15185094 15185519 -140444601 - RLTR20B2 LTR ERVK -91 469 2 2 700 1755 146 58 3 chr4 15185523 15185833 -140444287 - RMER4A LTR ERVK -139 327 1 2 700 332 307 77 19 chr4 15185897 15186053 -140444067 + MLT2D LTR ERVL 395 559 -1 2 700 267 387 51 46 chr4 15186199 15186394 -140443726 - LTR33 LTR ERVL -319 196 1 2 700 1163 54 14 0 chr4 15186819 15186966 -140443154 + B1_Mur4 SINE Alu 2 150 0 2 700 270 132 0 0 chr4 15186966 15187019 -140443101 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 2 700 813 251 91 38 chr4 15187019 15187149 -140442971 + L1M2 LINE L1 4284 4421 -1722 2 700 531 289 189 16 chr4 15187149 15187472 -140442648 + MTE2a LTR MaLR 1 379 0 2 700 813 251 91 38 chr4 15187472 15187739 -140442381 + L1M2 LINE L1 4422 4702 -1441 2 700 770 187 14 0 chr4 15188320 15188459 -140441661 - B1_Mus2 SINE Alu -6 141 1 2 700 1202 276 113 86 chr4 15188580 15188599 -140441521 + L1_Mur3 LINE L1 4789 4807 -1073 2 700 474 33 0 0 chr4 15188599 15188659 -140441461 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 700 1202 276 113 86 chr4 15188659 15189378 -140440742 + L1_Mur3 LINE L1 4808 5566 -314 2 700 2230 175 122 26 chr4 15189378 15189911 -140440209 + RLTR31A_Mm LTR ERVK 1 584 0 2 700 1202 276 113 86 chr4 15189911 15190106 -140440014 + L1_Mur3 LINE L1 5567 5749 -131 2 700 1208 54 0 0 chr4 15190200 15190348 -140439772 - B1_Mus1 SINE Alu 0 148 1 2 700 420 20 0 0 chr4 15190411 15190460 -140439660 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 700 215 152 22 0 chr4 15193240 15193286 -140436834 + (CGG)n Simple_repeat Simple_repeat 3 49 0 2 700 22 80 0 0 chr4 15193346 15193396 -140436724 + GC_rich Low_complexity Low_complexity 1 50 0 2 700 551 258 8 8 chr4 15194624 15194753 -140435367 - B1F SINE Alu -20 129 1 2 700 193 324 80 9 chr4 15195213 15195325 -140434795 + MIR SINE MIR 86 205 -57 2 700 34 42 0 0 chr4 15197317 15197365 -140432755 + AT_rich Low_complexity Low_complexity 1 48 0 2 700 194 149 82 41 chr4 15198039 15198088 -140432032 - L3 LINE CR1 -4312 177 127 2 700 1153 62 0 20 chr4 15198610 15198758 -140431362 - B1_Mus2 SINE Alu -1 146 2 2 700 247 258 79 0 chr4 15199390 15199479 -140430641 + MER58B DNA MER1_type 246 341 0 2 700 679 265 32 18 chr4 15202429 15202648 -140427472 - ID_B1 SINE B4 -1 223 2 2 700 2911 88 13 47 chr4 15202714 15203166 -140426954 + L1Md_F2 LINE L1 6146 6582 0 2 700 408 256 182 91 chr4 15203775 15203951 -140426169 + B3A SINE B2 4 195 -3 2 701 359 249 202 46 chr4 15204775 15204948 -140425172 - B3 SINE B2 0 216 17 2 701 333 0 0 0 chr4 15204953 15204990 -140425130 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 701 413 270 108 60 chr4 15204990 15205175 -140424945 - B3A SINE B2 -4 194 1 2 701 431 293 122 21 chr4 15207061 15207298 -140422822 - MLT1F2 LTR MaLR -82 478 218 2 701 1220 54 0 7 chr4 15207652 15207801 -140422319 + B1_Mus1 SINE Alu 1 148 0 2 701 252 86 0 0 chr4 15208931 15208966 -140421154 + (T)n Simple_repeat Simple_repeat 1 35 0 2 701 1236 54 0 0 chr4 15208966 15209113 -140421007 - B1_Mus2 SINE Alu 0 147 1 2 701 475 239 0 11 chr4 15214366 15214455 -140415665 + PB1D10 SINE Alu 1 88 -29 2 701 1589 38 0 79 chr4 15214961 15215189 -140414931 + L1Md_F3 LINE L1 6364 6573 -11 2 701 573 0 0 38 chr4 15215533 15215613 -140414507 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 701 249 33 0 0 chr4 15216209 15216239 -140413881 + (GGGGA)n Simple_repeat Simple_repeat 5 34 0 2 701 417 288 0 18 chr4 15218943 15219056 -140411064 - PB1D10 SINE Alu -6 111 1 2 701 710 78 0 10 chr4 15219644 15219747 -140410373 + (TTC)n Simple_repeat Simple_repeat 2 103 0 2 701 1159 61 0 45 chr4 15219747 15219901 -140410219 - B1_Mus1 SINE Alu 0 148 2 2 701 352 283 165 33 chr4 15220146 15220537 -140409583 + L1MA5 LINE L1 5858 6299 -1 2 701 369 0 0 0 chr4 15220962 15221003 -140409117 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 701 597 218 57 0 chr4 15221156 15221280 -140408840 + B1_Mur1 SINE Alu 9 139 -10 2 701 294 29 0 0 chr4 15221356 15221391 -140408729 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 701 252 250 0 30 chr4 15221666 15221732 -140408388 + G-rich Low_complexity Low_complexity 1 64 0 2 701 1448 179 171 11 chr4 15222644 15222994 -140407126 + RMER10A LTR ERVL 29 434 -8 2 701 292 327 83 72 chr4 15223282 15223668 -140406452 - RLTR42-int LTR ERVK -3611 1911 1522 2 701 354 270 53 18 chr4 15223697 15223810 -140406310 - B4A SINE B4 -175 117 1 2 701 477 0 0 0 chr4 15224133 15224186 -140405934 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 701 353 249 166 0 chr4 15224186 15224304 -140405816 - B1_Mur1 SINE Alu -9 141 2 2 701 234 0 0 0 chr4 15224325 15224351 -140405769 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2 701 333 0 0 0 chr4 15224351 15224387 -140405733 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2 701 1136 67 0 0 chr4 15224387 15224521 -140405599 - B1_Mus2 SINE Alu -13 134 1 2 701 8892 15 1 1 chr4 15224806 15225802 -140404318 - L1Md_A LINE L1 0 6582 5587 2 701 3680 15 0 0 chr4 15225805 15226215 -140403905 + L1Md_A LINE L1 5215 5624 -259 2 701 409 283 227 23 chr4 15226437 15226577 -140403543 + L1MC4 LINE L1 6476 6664 -1331 2 701 564 15 0 0 chr4 15226577 15226642 -140403478 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2 701 613 242 187 13 chr4 15226642 15226912 -140403208 + L1MC4 LINE L1 6665 7015 -1027 2 701 428 289 117 74 chr4 15226997 15227296 -140402824 + LTR16B LTR ERVL 1 312 -151 2 701 465 327 49 43 chr4 15227403 15227748 -140402372 + L1MC4 LINE L1 7421 7767 -275 2 701 303 320 160 37 chr4 15227892 15228298 -140401822 - L2 LINE L2 -620 2799 2344 2 701 3668 23 5 0 chr4 15230055 15230449 -140399671 - MTA_Mm LTR MaLR 0 396 1 2 701 994 164 115 5 chr4 15230667 15230875 -140399245 + RMER4B LTR ERVK 17 247 -338 2 701 201 244 12 12 chr4 15230949 15231032 -140399088 + (CTTG)n Simple_repeat Simple_repeat 1 83 0 2 701 411 262 19 0 chr4 15231033 15231140 -140398980 + RMER4B LTR ERVK 343 451 -134 2 701 227 31 31 0 chr4 15231895 15231927 -140398193 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 701 396 0 0 0 chr4 15232709 15232753 -140397367 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 701 225 0 0 0 chr4 15233109 15233134 -140396986 + (T)n Simple_repeat Simple_repeat 1 25 0 2 701 238 26 51 0 chr4 15234225 15234264 -140395856 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 701 274 282 0 27 chr4 15234389 15234462 -140395658 - RSINE1 SINE B4 0 165 95 2 701 180 0 0 0 chr4 15234769 15234789 -140395331 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 701 249 33 0 0 chr4 15235446 15235476 -140394644 + (C)n Simple_repeat Simple_repeat 1 30 0 2 701 187 319 13 65 chr4 15235527 15235604 -140394516 + L3 LINE CR1 2940 3012 -1477 2 701 273 57 0 0 chr4 15235635 15235670 -140394450 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 701 28 0 0 0 chr4 15235997 15236025 -140394095 + AT_rich Low_complexity Low_complexity 1 28 0 2 701 5695 91 8 11 chr4 15236034 15236790 -140393330 + L1_Mus4 LINE L1 5883 6636 0 2 701 218 263 0 0 chr4 15237427 15237465 -140392655 + ID4_ SINE ID 40 77 -6 2 701 534 54 0 0 chr4 15237592 15237666 -140392454 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 701 982 219 87 0 chr4 15237678 15237874 -140392246 + B3 SINE B2 4 216 0 2 701 209 159 22 22 chr4 15237928 15237973 -140392147 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2 701 613 301 26 21 chr4 15237997 15238187 -140391933 - B3A SINE B2 -4 194 4 3 701 820 258 5 31 chr4 15239379 15239571 -140390549 - B3 SINE B2 -28 188 2 3 701 1877 111 4 4 chr4 15240271 15240542 -140389578 + Lx2 LINE L1 6652 6922 -75 3 701 41 36 0 0 chr4 15240636 15240691 -140389429 + AT_rich Low_complexity Low_complexity 1 55 0 3 701 3538 28 15 0 chr4 15240738 15241128 -140388992 - MTA_Mm LTR MaLR 0 396 1 3 701 205 167 0 0 chr4 15242444 15242480 -140387640 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 701 879 258 68 27 chr4 15242482 15242745 -140387375 - B4A SINE B4 0 292 19 3 701 21 36 0 0 chr4 15242999 15243027 -140387093 + AT_rich Low_complexity Low_complexity 1 28 0 3 701 357 240 0 0 chr4 15243704 15243800 -140386320 + (CATA)n Simple_repeat Simple_repeat 1 96 0 3 701 632 317 72 12 chr4 15243893 15244142 -140385978 + B4A SINE B4 2 265 -27 3 701 1000 91 0 27 chr4 15244161 15244390 -140385730 + (CA)n Simple_repeat Simple_repeat 1 222 0 3 701 570 287 249 13 chr4 15244437 15244670 -140385450 + B4A SINE B4 5 292 0 3 701 432 0 0 0 chr4 15244689 15244737 -140385383 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 701 437 317 43 18 chr4 15245006 15245170 -140384950 + MER47A DNA MER2_type 113 280 -86 3 701 238 325 139 16 chr4 15246322 15246444 -140383676 - MIRb SINE MIR -82 186 50 3 701 366 59 14 56 chr4 15247359 15247431 -140382689 + (TCTCCC)n Simple_repeat Simple_repeat 5 73 0 3 701 22 35 0 0 chr4 15248871 15248900 -140381220 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 284 292 0 53 chr4 15249258 15249334 -140380786 - ID SINE ID -149 75 4 3 701 1515 196 72 70 chr4 15249913 15250286 -140379834 - ORR1D1 LTR MaLR 0 374 1 3 701 253 280 58 29 chr4 15251131 15251234 -140378886 - RMER10A LTR ERVL -19 423 318 3 701 257 293 84 71 chr4 15251266 15251575 -140378545 - RMER10A LTR ERVL -118 324 12 3 701 22 0 0 0 chr4 15253803 15253825 -140376295 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 765 0 0 0 chr4 15254071 15254156 -140375964 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 701 1278 48 7 0 chr4 15256697 15256843 -140373277 - B1_Mus2 SINE Alu 0 147 1 3 701 350 274 103 19 chr4 15257162 15257218 -140372902 + Lx8 LINE L1 7275 7330 -143 3 701 390 21 0 0 chr4 15257218 15257265 -140372855 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 701 324 0 0 0 chr4 15257265 15257300 -140372820 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 701 350 274 103 19 chr4 15257300 15257398 -140372722 + Lx8 LINE L1 7331 7442 -31 3 701 1823 193 62 27 chr4 15257404 15257772 -140372348 + ORR1C2 LTR MaLR 1 381 -3 3 701 466 358 42 24 chr4 15259117 15259283 -140370837 + B4 SINE B4 3 171 -121 3 701 351 0 0 0 chr4 15259418 15259457 -140370663 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 701 387 132 0 0 chr4 15259458 15259526 -140370594 + (CCTG)n Simple_repeat Simple_repeat 2 69 0 3 701 310 286 106 57 chr4 15259559 15259700 -140370420 - MER34 LTR ERV1 0 542 395 3 701 472 322 54 13 chr4 15259728 15259967 -140370153 - MER34 LTR ERV1 -231 311 63 3 701 257 0 30 0 chr4 15260094 15260127 -140369993 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 701 659 269 44 13 chr4 15261039 15261197 -140368923 - RSINE1 SINE B4 0 165 3 3 701 734 291 153 20 chr4 15261503 15261752 -140368368 + B4 SINE B4 1 282 -10 3 701 807 21 0 0 chr4 15261753 15261850 -140368270 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 701 21 36 0 0 chr4 15262719 15262747 -140367373 + AT_rich Low_complexity Low_complexity 1 28 0 3 701 227 350 74 66 chr4 15263864 15264256 -140365864 + Helitron3Na_Mam RC Helitron 12 406 -80 3 701 785 273 70 0 chr4 15264270 15264457 -140365663 + B3 SINE B2 2 201 -15 3 701 192 135 0 0 chr4 15264466 15264503 -140365617 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 701 21 0 0 0 chr4 15264526 15264547 -140365573 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 307 269 13 13 chr4 15264677 15264756 -140365364 - MER20 DNA MER1_type -1 218 140 3 701 1090 297 30 12 chr4 15264878 15265215 -140364905 + RMER15 LTR ERVL 233 575 0 3 701 542 294 36 18 chr4 15265215 15265369 -140364751 - MER20 DNA MER1_type -62 157 1 3 701 821 287 42 114 chr4 15265509 15265894 -140364226 + ORR1E LTR MaLR 3 359 0 3 701 297 329 0 0 chr4 15266246 15266322 -140363798 + B4A SINE B4 1 76 -216 3 701 1725 157 35 108 chr4 15268064 15268472 -140361648 + RMER17C LTR ERVK 1 379 -31 3 701 3052 36 2 167 chr4 15268472 15268939 -140361181 - RLTR10 LTR ERVK 0 390 1 3 701 1725 157 35 108 chr4 15268939 15268958 -140361162 + RMER17C LTR ERVK 380 397 -13 3 701 15759 37 47 3 chr4 15268958 15270856 -140359264 - RLTR10-int LTR ERVK -20 1967 9 3 701 3066 33 2 167 chr4 15270857 15271324 -140358796 - RLTR10 LTR ERVK 0 390 1 3 701 22 35 0 0 chr4 15271823 15271852 -140358268 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 3267 105 23 14 chr4 15272396 15272829 -140357291 - RLTR9B LTR ERVK 0 437 1 3 701 374 120 38 62 chr4 15272830 15272910 -140357210 - ETnERV2-int LTR ERVK -2 7404 7327 3 701 273 136 0 64 chr4 15273058 15273071 -140357049 - L1VL1 LINE L1 -6095 327 317 3 701 989 148 22 11 chr4 15273071 15273256 -140356864 + Lx2B LINE L1 6805 6991 -9 3 701 273 136 0 64 chr4 15273256 15273289 -140356831 - L1VL1 LINE L1 -6106 316 284 3 701 8017 81 5 0 chr4 15273289 15274427 -140355693 + L1_Mus3 LINE L1 5491 6634 -4 3 701 332 344 45 0 chr4 15274456 15274677 -140355443 + L1M5 LINE L1 3463 3693 -2453 3 701 435 83 0 0 chr4 15274677 15274737 -140355383 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 3 701 351 258 58 0 chr4 15274992 15275112 -140355008 - L1MB5 LINE L1 -10 6164 6038 3 701 183 42 0 0 chr4 15275128 15275152 -140354968 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 701 299 309 21 0 chr4 15275153 15275256 -140354864 - L1MB5 LINE L1 -183 5995 5891 3 701 225 0 0 0 chr4 15277888 15277913 -140352207 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 701 1728 133 86 0 chr4 15278144 15278445 -140351675 - IAPEY3_LTR LTR ERVK -5 327 1 3 701 347 380 21 32 chr4 15278645 15278835 -140351285 - L2 LINE L2 -572 2847 2660 3 701 298 388 94 0 chr4 15278923 15279083 -140351037 + MER5B DNA MER1_type 4 178 0 3 701 192 347 79 13 chr4 15279625 15279701 -140350419 - MIR3 SINE MIR -44 164 84 3 701 261 274 32 16 chr4 15280155 15280255 -140349865 + ORR1D2 LTR MaLR 279 372 -7 3 701 206 227 0 0 chr4 15280281 15280325 -140349795 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 701 27 29 0 0 chr4 15280624 15280658 -140349462 + AT_rich Low_complexity Low_complexity 1 34 0 3 701 367 245 131 10 chr4 15280678 15280777 -140349343 + MIRb SINE MIR 43 153 -115 3 701 2196 130 29 16 chr4 15281101 15281440 -140348680 + Lx4A LINE L1 6560 6906 -152 3 701 3422 28 2 2 chr4 15281440 15281836 -140348284 - MTA_Mm LTR MaLR 0 396 1 3 701 8239 55 33 3 chr4 15281836 15282902 -140347218 - MTA_Mm-int LTR MaLR 0 1098 1 3 701 3323 38 5 0 chr4 15282902 15283296 -140346824 - MTA_Mm LTR MaLR 0 396 1 3 701 2196 130 29 16 chr4 15283296 15283330 -140346790 + Lx4A LINE L1 6907 6938 -120 3 701 617 312 56 13 chr4 15283631 15283865 -140346255 - RLTR16 LTR ERVK -261 244 1 3 701 770 113 0 16 chr4 15283866 15283992 -140346128 + Lx4A LINE L1 6935 7058 0 3 701 336 196 9 73 chr4 15283999 15284109 -140346011 + Lx5 LINE L1 6940 7042 -8 3 701 385 88 0 0 chr4 15284116 15284173 -140345947 + L1Md_F2 LINE L1 6513 6569 -13 3 701 30 0 0 0 chr4 15284459 15284489 -140345631 + AT_rich Low_complexity Low_complexity 1 30 0 3 701 588 262 119 40 chr4 15284647 15285049 -140345071 - L1MA7 LINE L1 -66 6225 5792 3 701 391 269 33 8 chr4 15286005 15286125 -140343995 - MLT1C LTR MaLR 0 467 345 3 701 198 103 0 0 chr4 15286268 15286297 -140343823 + (T)n Simple_repeat Simple_repeat 1 29 0 3 701 216 0 0 0 chr4 15286351 15286375 -140343745 + (T)n Simple_repeat Simple_repeat 1 24 0 3 701 237 292 23 117 chr4 15286375 15286503 -140343617 - MLT1C LTR MaLR -274 116 1 3 701 429 122 28 18 chr4 15286523 15286632 -140343488 + L1Md_F2 LINE L1 6471 6580 -2 3 701 411 172 0 0 chr4 15286711 15286798 -140343322 + RMER17C-int LTR ERVK 2265 2351 -887 3 701 24 53 0 0 chr4 15287003 15287041 -140343079 + AT_rich Low_complexity Low_complexity 1 38 0 3 701 333 0 0 0 chr4 15289346 15289383 -140340737 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 701 446 266 62 38 chr4 15290116 15290276 -140339844 + RLTR43A LTR ERVK 201 364 0 3 701 212 167 0 0 chr4 15290936 15290978 -140339142 + T-rich Low_complexity Low_complexity 1 42 0 3 701 504 0 0 0 chr4 15291150 15291206 -140338914 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 701 456 51 0 0 chr4 15291490 15291549 -140338571 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 701 1095 110 0 0 chr4 15291549 15291695 -140338425 - B1_Mus1 SINE Alu -1 147 2 3 701 274 238 22 101 chr4 15292484 15292573 -140337547 + B1_Mus1 SINE Alu 1 83 -65 3 701 288 0 0 0 chr4 15292581 15292613 -140337507 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 701 396 59 0 0 chr4 15292613 15292664 -140337456 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 3 701 210 71 0 0 chr4 15292664 15292692 -140337428 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 701 1097 109 0 0 chr4 15292693 15292840 -140337280 - B1_Mus1 SINE Alu 0 148 2 3 701 236 259 0 0 chr4 15292840 15292894 -140337226 + B1_Mur2 SINE Alu 90 143 -6 3 701 432 0 0 0 chr4 15292894 15292942 -140337178 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 3 701 1870 239 29 2 chr4 15293059 15293475 -140336645 - Lx5 LINE L1 -7 7043 6617 3 701 840 271 4 8 chr4 15293645 15293879 -140336241 + Lx6 LINE L1 7217 7449 -11 3 701 612 259 13 70 chr4 15294234 15294332 -140335788 + B4A SINE B4 1 89 -203 3 701 301 250 25 38 chr4 15294332 15294411 -140335709 + B1F2 SINE Alu 3 80 -69 3 701 333 47 0 0 chr4 15294498 15294541 -140335579 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 701 23 54 0 0 chr4 15294670 15294707 -140335413 + AT_rich Low_complexity Low_complexity 1 37 0 3 701 5037 52 2 8 chr4 15294779 15295419 -140334701 - L1Md_F2 LINE L1 -1 6581 5946 3 701 314 346 74 28 chr4 15295572 15295789 -140334331 + L2 LINE L2 2647 2873 -546 3 701 2865 142 211 16 chr4 15296283 15296862 -140333258 + RLTR17 LTR ERVK 1 692 0 3 701 25 31 0 0 chr4 15298441 15298473 -140331647 + AT_rich Low_complexity Low_complexity 1 32 0 4 701 1290 220 95 20 chr4 15298845 15299193 -140330927 - ORR1D1 LTR MaLR 0 374 1 4 701 456 254 85 0 chr4 15299257 15299375 -140330745 - Lx8 LINE L1 -495 6978 6851 4 701 1345 224 20 11 chr4 15300126 15300469 -140329651 + Lx5 LINE L1 6158 6727 -733 4 701 390 248 13 23 chr4 15300449 15300576 -140329544 + Lx5 LINE L1 7047 7132 -328 4 701 510 281 35 29 chr4 15300590 15300762 -140329358 + Lx5 LINE L1 7262 7434 -26 4 701 22 0 0 0 chr4 15300762 15300784 -140329336 + AT_rich Low_complexity Low_complexity 1 22 0 4 701 286 330 46 19 chr4 15301341 15301449 -140328671 + MER58A DNA MER1_type 2 112 -112 4 701 230 298 10 78 chr4 15301714 15301816 -140328304 + RMER2 LTR ERV1 452 546 -21 4 701 284 286 21 21 chr4 15301938 15302031 -140328089 - MTEb LTR MaLR 0 379 287 4 701 3568 63 2 0 chr4 15302388 15302846 -140327274 + L1Md_F2 LINE L1 6124 6582 0 4 701 468 0 0 0 chr4 15303086 15303138 -140326982 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 701 431 278 0 22 chr4 15303138 15303230 -140326890 - RSINE1 SINE B4 -46 119 30 4 701 502 340 28 52 chr4 15303334 15303544 -140326576 + B4A SINE B4 5 218 -74 4 701 296 64 0 21 chr4 15303544 15303592 -140326528 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 701 502 340 28 52 chr4 15303592 15303618 -140326502 + B4A SINE B4 219 236 -56 4 701 720 270 19 5 chr4 15303618 15303803 -140326317 + B3 SINE B2 3 189 -27 4 701 297 51 0 0 chr4 15303803 15303842 -140326278 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 701 720 270 19 5 chr4 15303842 15303861 -140326259 + B3 SINE B2 190 209 -7 4 701 771 118 0 0 chr4 15303880 15304015 -140326105 + (GA)n Simple_repeat Simple_repeat 2 136 0 4 701 258 295 0 40 chr4 15304068 15304167 -140325953 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 4 701 1339 254 45 42 chr4 15304264 15304642 -140325478 - MTE2a LTR MaLR 0 379 1 4 701 468 0 0 0 chr4 15305841 15305893 -140324227 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 701 1271 195 66 71 chr4 15306409 15306526 -140323594 - L1_Mur3 LINE L1 -942 4938 4830 4 701 612 27 0 0 chr4 15306526 15306600 -140323520 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 4 701 1271 195 66 71 chr4 15306600 15306846 -140323274 - L1_Mur3 LINE L1 -1051 4829 4577 4 701 1393 200 53 7 chr4 15307998 15308376 -140321744 - RLTR11A2 LTR ERVK 0 527 1 4 701 5567 154 4 9 chr4 15309301 15310294 -140319826 + L1_Mus2 LINE L1 5220 6213 -353 4 701 879 48 0 0 chr4 15310294 15310399 -140319721 + U6 snRNA snRNA 1 105 -2 4 701 5567 151 3 14 chr4 15310399 15310759 -140319361 + L1_Mus2 LINE L1 6214 6566 0 4 701 2598 121 20 18 chr4 15310777 15311216 -140318904 + Lx LINE L1 6203 6642 -12 4 701 297 140 0 0 chr4 15311260 15311317 -140318803 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 701 417 296 102 93 chr4 15311501 15311706 -140318414 + MTB_Mm LTR MaLR 56 262 -145 4 701 24 53 0 0 chr4 15313052 15313090 -140317030 + AT_rich Low_complexity Low_complexity 1 38 0 4 701 241 250 0 0 chr4 15313102 15313158 -140316962 - MLT2B1 LTR ERVL 0 567 512 4 701 765 226 99 122 chr4 15313157 15313459 -140316661 - MT2A LTR ERVL -238 295 1 4 701 623 139 8 0 chr4 15313476 15313605 -140316515 + (CA)n Simple_repeat Simple_repeat 2 131 0 4 701 213 293 91 26 chr4 15314312 15314389 -140315731 - ID2 SINE ID 0 83 2 4 701 254 351 58 51 chr4 15314387 15314510 -140315610 - B1_Mur3 SINE Alu 0 149 26 4 701 516 330 0 67 chr4 15314510 15314617 -140315503 - RMER30 DNA MER1_type -1 201 96 4 701 285 29 0 0 chr4 15314617 15314651 -140315469 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 701 516 330 0 67 chr4 15314651 15314667 -140315453 - RMER30 DNA MER1_type -107 95 92 4 701 315 0 0 0 chr4 15314667 15314702 -140315418 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 701 516 330 0 67 chr4 15314702 15314785 -140315335 - RMER30 DNA MER1_type -111 91 9 4 701 22 35 0 0 chr4 15314917 15314946 -140315174 + AT_rich Low_complexity Low_complexity 1 29 0 4 701 8991 45 1 2 chr4 15315171 15317020 -140313100 - L1Md_F2 LINE L1 -2 6580 4733 4 701 969 159 147 10 chr4 15317186 15317383 -140312737 + URR1B DNA MER1_type 2 225 0 4 701 285 167 0 0 chr4 15317860 15317938 -140312182 + T-rich Low_complexity Low_complexity 1 78 0 4 701 1183 55 0 14 chr4 15317938 15318086 -140312034 - B1_Mm SINE Alu 0 147 2 4 701 1745 192 9 34 chr4 15318413 15318756 -140311364 + MTC LTR MaLR 5 335 -86 4 701 4686 53 10 2 chr4 15318756 15319338 -140310782 + LTRIS_Mus LTR ERV1 1 587 0 4 701 1509 227 13 135 chr4 15319338 15319364 -140310756 + MTC LTR MaLR 321 322 -85 4 701 621 0 0 0 chr4 15319364 15319433 -140310687 + (CTGTG)n Simple_repeat Simple_repeat 2 70 0 4 701 1509 227 13 135 chr4 15319433 15319521 -140310599 + MTC LTR MaLR 323 407 0 4 701 308 314 8 63 chr4 15320167 15320293 -140309827 - L2a LINE L2 -281 3145 3027 4 701 663 250 88 31 chr4 15320408 15320602 -140309518 - ID_B1 SINE B4 -19 205 1 4 701 346 355 90 5 chr4 15320645 15320846 -140309274 - MIRb SINE MIR -28 240 23 4 701 354 45 0 0 chr4 15321563 15321607 -140308513 + (CAG)n Simple_repeat Simple_repeat 1 44 0 4 701 1471 235 109 22 chr4 15321630 15322079 -140308041 + Lx7 LINE L1 7038 7525 -171 4 701 3058 214 52 14 chr4 15322065 15322733 -140307387 - Lx5 LINE L1 0 7050 6357 4 701 209 187 0 85 chr4 15322738 15322820 -140307300 + T-rich Low_complexity Low_complexity 1 75 0 4 701 402 274 0 0 chr4 15322985 15323058 -140307062 - MER2B DNA MER2_type -1 335 263 4 701 3519 45 45 0 chr4 15323058 15323499 -140306621 + L1_Mus1 LINE L1 6107 6567 0 4 701 477 219 8 31 chr4 15323560 15323687 -140306433 + Lx7 LINE L1 7566 7689 -7 4 701 488 265 64 41 chr4 15323796 15324016 -140306104 + L2a LINE L2 3202 3426 0 4 701 542 181 96 15 chr4 15324544 15324679 -140305441 - MTC LTR MaLR 0 421 276 4 701 210 224 0 0 chr4 15324705 15324754 -140305366 + CT-rich Low_complexity Low_complexity 5 53 0 4 701 882 198 103 83 chr4 15324774 15325016 -140305104 + MTD LTR MaLR 13 259 -160 4 701 30 45 0 0 chr4 15325281 15325325 -140304795 + AT_rich Low_complexity Low_complexity 1 44 0 4 701 194 62 31 0 chr4 15325634 15325666 -140304454 + (TTTTTA)n Simple_repeat Simple_repeat 1 33 0 4 701 274 361 19 0 chr4 15325673 15325781 -140304339 - PB1 SINE Alu -16 111 2 4 701 402 343 26 87 chr4 15325857 15326052 -140304068 - B4A SINE B4 0 292 110 4 701 310 258 90 0 chr4 15326276 15326365 -140303755 + B3 SINE B2 110 206 -10 4 701 283 347 89 74 chr4 15326379 15326703 -140303417 + MLT1I LTR MaLR 73 401 -10 4 701 443 302 0 23 chr4 15326960 15327092 -140303028 - MT2A LTR ERVL -330 203 75 4 701 373 283 104 42 chr4 15328033 15328177 -140301943 + MER5A DNA MER1_type 30 182 -7 4 701 1249 288 46 14 chr4 15328978 15329327 -140300793 + MTE2b LTR MaLR 6 365 -14 4 701 2169 162 24 81 chr4 15329430 15329926 -140300194 + RMER17B LTR ERVK 1 468 -490 4 701 279 0 0 0 chr4 15330457 15330488 -140299632 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 4 701 2635 111 19 12 chr4 15330488 15330898 -140299222 - Lx3_Mus LINE L1 -18 6991 6579 4 701 2000 78 0 15 chr4 15330888 15331217 -140298903 + L1_Mus1 LINE L1 6298 6567 0 4 701 269 125 0 0 chr4 15331222 15331262 -140298858 - Lx3_Mus LINE L1 -416 6593 6554 4 87 22008 94 28 3 chr4 15331254 15335970 -140294150 - L1_Mur1 LINE L1 -574 5312 209 4 702 222 37 0 0 chr4 15337191 15337218 -140292902 + (TCC)n Simple_repeat Simple_repeat 1 27 0 4 702 2753 42 0 3 chr4 15338213 15338548 -140291572 - L1_Mus1 LINE L1 0 6567 6234 4 702 7224 64 16 0 chr4 15340061 15341197 -140288923 - L1_Mus1 LINE L1 0 6567 5415 4 702 370 271 185 58 chr4 15342303 15342562 -140287558 - B4 SINE B4 0 292 1 4 702 213 39 0 0 chr4 15343019 15343045 -140287075 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 702 315 0 0 0 chr4 15343046 15343081 -140287039 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 702 2411 155 25 7 chr4 15343141 15343628 -140286492 - MTC LTR MaLR -8 413 8 4 702 272 248 143 0 chr4 15343699 15343832 -140286288 - Lx6 LINE L1 -2 7458 7307 4 702 2040 154 24 87 chr4 15343835 15344247 -140285873 - ORR1B1 LTR MaLR -8 386 1 4 702 3237 261 55 79 chr4 15344247 15345479 -140284641 - Lx5 LINE L1 -120 6930 5728 4 702 252 0 0 0 chr4 15345503 15345531 -140284589 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 702 294 29 0 0 chr4 15345531 15345565 -140284555 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 702 2649 53 0 6 chr4 15345567 15345907 -140284213 + ORR1A1 LTR MaLR 1 338 -8 4 702 1083 55 0 7 chr4 15345911 15346058 -140284062 + ORR1A1-int LTR MaLR 1 146 -1646 4 702 5458 42 3 1 chr4 15346069 15346757 -140283363 + ORR1A1-int LTR MaLR 1104 1792 0 4 702 2385 65 43 3 chr4 15346757 15347082 -140283038 + ORR1A1 LTR MaLR 1 338 -8 4 702 1365 69 31 16 chr4 15347430 15347621 -140282499 + B2_Mm2 SINE B2 1 194 -1 4 702 637 269 20 7 chr4 15347697 15347847 -140282273 + RSINE1 SINE B4 2 153 -12 4 702 22 35 0 0 chr4 15348270 15348299 -140281821 + AT_rich Low_complexity Low_complexity 1 29 0 4 702 299 314 113 54 chr4 15349019 15349187 -140280933 + MTEb LTR MaLR 3 180 -199 4 702 240 294 15 12 chr4 15349564 15349650 -140280470 - ORR1E LTR MaLR -6 415 269 4 702 12746 123 156 2 chr4 15349854 15354007 -140276113 - L1Md_F2 LINE L1 -2 6580 1203 4 702 4679 165 57 23 chr4 15353973 15354920 -140275200 - L1Md_F LINE L1 -5380 1139 161 4 702 1280 329 70 9 chr4 15355399 15356029 -140274091 + Lx8 LINE L1 6674 7341 -132 4 702 286 283 17 0 chr4 15357264 15357324 -140272796 - tRNA-Ala-GCY_ tRNA tRNA -11 64 4 4 702 230 362 98 39 chr4 15357436 15357692 -140272428 - L2a LINE L2 -196 3230 2960 4 702 230 225 12 0 chr4 15357809 15357889 -140272231 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 702 551 349 25 25 chr4 15357939 15358142 -140271978 - B4A SINE B4 -18 274 72 4 702 21 0 0 0 chr4 15360994 15361015 -140269105 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 255 338 3 0 chr4 15361290 15361390 -140268730 - ID2 SINE ID -50 102 2 4 702 181 340 30 120 chr4 15361403 15361670 -140268450 + L2c LINE L2 3124 3366 -21 4 702 192 188 0 59 chr4 15362086 15362137 -140267983 + L2b LINE L2 3323 3370 -5 4 702 1061 205 4 9 chr4 15363285 15363511 -140266609 - URR1B DNA MER1_type 0 225 1 5 702 1252 34 0 0 chr4 15363543 15363690 -140266430 + B1_Mm SINE Alu 1 147 0 5 702 234 91 0 0 chr4 15363690 15363723 -140266397 + (A)n Simple_repeat Simple_repeat 1 33 0 5 702 291 183 0 0 chr4 15363875 15363957 -140266163 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 702 495 122 0 0 chr4 15364035 15364125 -140265995 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 702 258 32 0 0 chr4 15365329 15365360 -140264760 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 702 328 281 6 1 chr4 15366064 15366175 -140263945 - L1MA6 LINE L1 -6 6294 6179 5 702 341 275 0 0 chr4 15366475 15366555 -140263565 - ID_B1 SINE B4 -22 202 123 5 702 309 82 0 0 chr4 15366557 15366606 -140263514 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 702 1108 89 0 0 chr4 15366609 15366755 -140263365 - B1_Mus1 SINE Alu -1 147 2 5 702 220 322 0 17 chr4 15366755 15366811 -140263309 - ID_B1 SINE B4 -86 138 83 5 702 1432 229 108 25 chr4 15367324 15367623 -140262497 + MTD LTR MaLR 24 356 -63 5 702 269 26 0 26 chr4 15367623 15367662 -140262458 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 702 1432 229 108 25 chr4 15367662 15367724 -140262396 + MTD LTR MaLR 357 414 -5 5 702 246 143 0 0 chr4 15367994 15368029 -140262091 - MTD LTR MaLR -96 323 289 5 702 204 40 0 0 chr4 15368380 15368405 -140261715 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 702 411 81 45 22 chr4 15368405 15368494 -140261626 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 5 702 1810 222 62 5 chr4 15369493 15369882 -140260238 - MTD LTR MaLR -8 411 1 5 702 592 176 128 7 chr4 15370437 15370477 -140259643 + Lx4A LINE L1 6889 6928 -130 5 702 333 0 0 0 chr4 15370477 15370514 -140259606 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 702 592 176 128 7 chr4 15370514 15370622 -140259498 + Lx4A LINE L1 6929 7054 -4 5 702 270 243 162 19 chr4 15371477 15371582 -140258538 + LTR16E2 LTR ERVL 448 567 -1 5 702 1166 261 17 17 chr4 15372037 15372333 -140257787 - Lx5 LINE L1 -6 7044 6749 5 702 3924 212 35 10 chr4 15372336 15373198 -140256922 + Lx5 LINE L1 5828 6710 -340 5 702 863 188 129 36 chr4 15373243 15373436 -140256684 - ORR1C2 LTR MaLR 0 384 174 5 702 410 37 72 24 chr4 15373439 15373522 -140256598 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 5 702 657 218 16 91 chr4 15373527 15373714 -140256406 - ORR1C2 LTR MaLR -191 176 4 5 702 263 357 127 79 chr4 15373838 15374073 -140256047 - MLT2B1 LTR ERVL 0 520 1 5 702 333 346 65 92 chr4 15374073 15374334 -140255786 - MTEa LTR MaLR -125 254 1 5 702 193 146 20 20 chr4 15376271 15376320 -140253800 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 702 347 41 20 0 chr4 15376323 15376372 -140253748 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 702 228 190 83 33 chr4 15378574 15378634 -140251486 + MT2B LTR ERVL 188 250 -351 5 702 344 174 87 0 chr4 15378584 15378653 -140251467 + PB1D10 SINE Alu 42 116 -1 5 702 2703 185 47 21 chr4 15380348 15380907 -140249213 + RMER15 LTR ERVL 1 573 -2 5 702 3353 35 5 0 chr4 15381099 15381493 -140248627 + MTA_Mm LTR MaLR 1 396 0 5 702 4239 46 28 6 chr4 15381493 15382093 -140248027 + MTA_Mm-int LTR MaLR 1 555 -543 5 702 233 232 0 67 chr4 15383684 15383744 -140246376 + RLTR9B2 LTR ERVK 53 108 -312 5 702 258 32 0 0 chr4 15384105 15384136 -140245984 + (TGG)n Simple_repeat Simple_repeat 2 32 0 5 702 701 67 0 0 chr4 15384287 15384377 -140245743 + L1Md_F2 LINE L1 5497 5586 -297 5 702 7111 88 11 3 chr4 15384378 15385363 -140244757 + L1Md_F2 LINE L1 5588 6580 -2 5 702 1152 82 0 0 chr4 15385382 15385529 -140244591 + B1_Mm SINE Alu 1 147 0 5 702 238 102 0 48 chr4 15385530 15385592 -140244528 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 702 438 263 162 39 chr4 15387072 15387376 -140242744 + L1M5 LINE L1 5109 5452 -721 5 702 626 60 8 25 chr4 15387637 15387757 -140242363 + RMER17B LTR ERVK 311 428 -530 5 702 36841 47 12 3 chr4 15388933 15395167 -140234953 - L1Md_T LINE L1 -1 6581 332 5 702 617 258 71 0 chr4 15395193 15395375 -140234745 - B3 SINE B2 -19 197 3 5 702 192 277 19 96 chr4 15396019 15396123 -140233997 + L2 LINE L2 1264 1359 -2060 5 702 324 0 0 0 chr4 15396277 15396313 -140233807 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 702 342 0 0 0 chr4 15396423 15396461 -140233659 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 702 23 0 0 0 chr4 15396829 15396852 -140233268 + AT_rich Low_complexity Low_complexity 1 23 0 5 702 5837 175 83 30 chr4 15397040 15398370 -140231750 - Lx2B LINE L1 0 7000 5601 5 702 847 268 140 16 chr4 15398356 15398720 -140231400 + Lx2B LINE L1 6592 7000 0 5 702 350 59 0 0 chr4 15399344 15399395 -140230725 - L1_Mus2 LINE L1 -1 6565 6515 5 702 2379 69 3 3 chr4 15399395 15399759 -140230361 + L1_Mus3 LINE L1 5548 5911 -727 5 702 215 214 84 14 chr4 15400131 15400202 -140229918 - MIRb SINE MIR -138 130 55 5 702 24 0 0 0 chr4 15400796 15400820 -140229300 + AT_rich Low_complexity Low_complexity 1 24 0 5 702 286 301 114 53 chr4 15401133 15401396 -140228724 + Lx8 LINE L1 6129 6407 -1066 5 702 2262 229 33 29 chr4 15401396 15401436 -140228684 - RMER15 LTR ERVL 0 575 533 5 702 297 0 0 0 chr4 15401436 15401469 -140228651 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 702 2262 229 33 29 chr4 15401469 15401860 -140228260 - RMER15 LTR ERVL -43 532 137 5 702 1122 178 18 9 chr4 15401860 15402081 -140228039 - URR1A DNA MER1_type 0 226 4 5 702 2262 229 33 29 chr4 15402081 15402160 -140227960 - RMER15 LTR ERVL -439 136 63 5 702 30 0 0 0 chr4 15402162 15402192 -140227928 + AT_rich Low_complexity Low_complexity 1 30 0 5 702 22688 127 21 8 chr4 15402207 15407008 -140223112 - L1_Mus3 LINE L1 -6 6632 1763 5 702 1214 183 8 0 chr4 15407010 15407245 -140222875 - L1VL2 LINE L1 -5785 550 314 5 702 627 14 0 0 chr4 15407867 15407939 -140222181 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 702 243 244 67 89 chr4 15410033 15410123 -140219997 - MLT1B LTR MaLR -28 362 275 5 702 442 257 89 27 chr4 15411655 15411767 -140218353 + MTEa LTR MaLR 199 317 -62 5 702 476 290 7 7 chr4 15411777 15411916 -140218204 - MTEa-int LTR MaLR -1420 160 22 5 702 596 303 80 126 chr4 15411935 15412324 -140217796 - MTEa LTR MaLR -8 371 1 5 702 598 293 0 0 chr4 15412641 15412774 -140217346 + B3A SINE B2 1 133 -65 5 702 285 51 0 0 chr4 15413061 15413100 -140217020 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 702 241 304 41 123 chr4 15413129 15413142 -140216978 + MT2B LTR ERVL 166 191 -410 5 702 370 269 63 27 chr4 15413142 15413253 -140216867 + B1F SINE Alu 25 139 -10 5 702 241 304 41 123 chr4 15413253 15413324 -140216796 + MT2B LTR ERVL 192 344 -257 5 702 332 266 117 0 chr4 15413264 15413358 -140216762 + PB1D10 SINE Alu 8 112 -5 5 702 814 96 0 0 chr4 15413576 15413691 -140216429 + B1_Mus1 SINE Alu 34 148 0 5 702 200 125 25 0 chr4 15413691 15413731 -140216389 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 5 702 563 282 14 21 chr4 15415110 15415255 -140214865 - ID_B1 SINE B4 -2 222 79 5 702 306 107 0 0 chr4 15416666 15416722 -140213398 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 702 1352 290 54 42 chr4 15416728 15417090 -140213030 - Lx8 LINE L1 -405 7068 6704 5 702 552 30 0 0 chr4 15417090 15417156 -140212964 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 5 702 1352 290 54 42 chr4 15417156 15417334 -140212786 - Lx8 LINE L1 -770 6703 6522 5 702 4872 220 48 4 chr4 15417752 15418778 -140211342 - Lx6 LINE L1 -54 7406 6336 5 702 5283 89 1 18 chr4 15418794 15419534 -140210586 - L1_Mus2 LINE L1 -2 6564 5837 5 702 5477 21 2 0 chr4 15419850 15420479 -140209641 - L1Md_A LINE L1 -1 6581 5952 5 702 582 53 0 21 chr4 15420490 15420586 -140209534 - L1Md_F2 LINE L1 -14 6568 6475 5 702 2480 39 3 0 chr4 15421316 15421627 -140208493 + L1Md_T LINE L1 6036 6347 -235 5 702 10331 52 4 17 chr4 15421625 15423787 -140206333 - L1Md_A LINE L1 -3334 2549 422 5 702 6124 108 10 1 chr4 15423790 15424374 -140205746 + L1Md_F2 LINE L1 4651 5234 -649 5 702 207 0 0 0 chr4 15424374 15424397 -140205723 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 702 6124 108 10 1 chr4 15424397 15424739 -140205381 + L1Md_F2 LINE L1 5235 5585 -298 5 702 6905 87 27 7 chr4 15424740 15425716 -140204404 + L1Md_F2 LINE L1 5587 6581 -1 5 702 216 210 12 24 chr4 15425968 15426051 -140204069 + GA-rich Low_complexity Low_complexity 1 82 0 5 702 540 68 0 0 chr4 15426075 15426148 -140203972 + (TATG)n Simple_repeat Simple_repeat 3 75 0 5 702 430 360 36 7 chr4 15426375 15426515 -140203605 + RSINE1 SINE B4 1 144 -21 5 702 1967 210 15 166 chr4 15426832 15427551 -140202569 + RMER19C LTR ERVK 1 611 0 5 702 1773 164 26 106 chr4 15427859 15428061 -140202059 + ORR1C2 LTR MaLR 1 185 -199 5 702 486 0 0 0 chr4 15428061 15428115 -140202005 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 702 1773 164 26 106 chr4 15428115 15428329 -140201791 + ORR1C2 LTR MaLR 186 384 0 5 702 253 322 103 97 chr4 15429232 15429686 -140200434 + LTR37B LTR ERV1 7 463 -5 5 702 463 205 169 8 chr4 15429870 15429988 -140200132 - B1_Mus1 SINE Alu -10 138 2 5 702 618 276 41 5 chr4 15430007 15430204 -140199916 - B3 SINE B2 -9 207 4 5 702 389 153 0 9 chr4 15431439 15431531 -140198589 - ORR1B1 LTR MaLR 0 394 295 5 702 7730 109 17 20 chr4 15431531 15432808 -140197312 - Lx3A LINE L1 -17 6964 5691 5 702 1622 188 94 6 chr4 15432810 15433141 -140196979 - ORR1B1 LTR MaLR -34 360 1 5 702 4102 57 0 4 chr4 15433663 15434175 -140195945 - L1Md_F2 LINE L1 0 6582 6073 5 702 861 149 21 62 chr4 15434838 15435031 -140195089 + B2_Mm2 SINE B2 5 189 -6 5 702 267 103 0 0 chr4 15435074 15435113 -140195007 + (T)n Simple_repeat Simple_repeat 1 39 0 5 702 1100 97 0 0 chr4 15435114 15435259 -140194861 - B1_Mus1 SINE Alu -1 147 3 5 702 383 282 119 11 chr4 15435577 15435751 -140194369 + MIR SINE MIR 23 206 -56 5 702 1389 188 181 3 chr4 15436696 15437017 -140193103 - ORR1C1 LTR MaLR 0 378 1 5 702 5125 217 117 56 chr4 15437017 15437165 -140192955 - ORR1C1-int LTR MaLR 0 1509 1407 5 702 1921 159 15 9 chr4 15437165 15437495 -140192625 - Lx4A LINE L1 0 7058 6727 5 702 5125 217 117 56 chr4 15437495 15438769 -140191351 - ORR1C1-int LTR MaLR -103 1406 1 5 702 1162 201 216 34 chr4 15438769 15438960 -140191160 - ORR1C1 LTR MaLR 0 378 163 5 702 980 112 28 0 chr4 15438960 15439103 -140191017 - B1_Mus1 SINE Alu -1 147 1 5 702 1162 201 216 34 chr4 15439103 15439231 -140190889 - ORR1C1 LTR MaLR -216 162 1 5 702 216 0 0 0 chr4 15439237 15439261 -140190859 + (A)n Simple_repeat Simple_repeat 1 24 0 5 702 216 0 0 0 chr4 15439425 15439449 -140190671 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 702 188 172 0 17 chr4 15439555 15439614 -140190506 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 6 702 222 188 42 0 chr4 15439670 15439718 -140190402 - PB1D7 SINE Alu 0 120 71 6 702 23 33 0 0 chr4 15440234 15440264 -140189856 + AT_rich Low_complexity Low_complexity 1 30 0 6 702 4509 174 63 10 chr4 15440626 15441489 -140188631 + RMER13B LTR ERVK 1 908 0 6 702 24 53 0 0 chr4 15443123 15443161 -140186959 + AT_rich Low_complexity Low_complexity 1 38 0 6 702 2562 76 35 3 chr4 15444084 15444454 -140185666 + L1_Mus3 LINE L1 6255 6636 -2 6 702 339 285 83 44 chr4 15444761 15444941 -140185179 - L1MC LINE L1 -2403 5479 5293 6 702 3858 184 26 37 chr4 15445169 15445974 -140184146 - Lx4B LINE L1 -6 7052 6257 6 702 2815 158 73 4 chr4 15445974 15446019 -140184101 - Lx4B LINE L1 -900 6158 6106 6 702 608 0 14 0 chr4 15446019 15446091 -140184029 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 702 12685 145 44 53 chr4 15446091 15448439 -140181681 - Lx4B LINE L1 -953 6105 3810 6 702 1058 90 14 0 chr4 15448439 15448584 -140181536 - B1_Mm SINE Alu 0 147 1 6 702 12685 144 42 58 chr4 15448584 15448893 -140181227 - Lx4B LINE L1 -2068 3809 3479 6 702 261 75 0 0 chr4 15448893 15448933 -140181187 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 6 702 12685 144 42 58 chr4 15448933 15449034 -140181086 - Lx4B LINE L1 -2399 3478 3367 6 702 1330 171 55 8 chr4 15449034 15449288 -140180832 + Lx4B LINE L1 6669 6934 -124 6 702 454 177 166 23 chr4 15449289 15449450 -140180670 - ORR1B2 LTR MaLR -223 155 1 6 702 301 88 49 12 chr4 15449946 15450027 -140180093 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 6 702 1131 57 0 0 chr4 15450033 15450173 -140179947 - B1_Mus2 SINE Alu -7 140 1 6 702 324 209 21 32 chr4 15450397 15450496 -140179624 + ORR1A4 LTR MaLR 157 290 -94 6 702 2159 282 68 8 chr4 15450632 15451262 -140178858 - Lx7 LINE L1 -396 7300 6633 6 702 930 245 0 0 chr4 15451270 15451458 -140178662 - Lx7 LINE L1 -1911 5785 5598 6 702 325 302 51 35 chr4 15451938 15452195 -140177925 - L1M5 LINE L1 -634 5539 5279 6 702 196 298 21 0 chr4 15452317 15452364 -140177756 + MIR SINE MIR 21 68 -194 6 702 2299 164 18 3 chr4 15452586 15452972 -140177148 + ORR1B1 LTR MaLR 3 394 0 6 702 270 73 0 0 chr4 15453690 15453731 -140176389 + (CATA)n Simple_repeat Simple_repeat 3 43 0 6 702 468 291 96 7 chr4 15453766 15453901 -140176219 + ID_B1 SINE B4 76 222 -2 6 702 330 305 117 29 chr4 15455463 15455703 -140174417 + L1MEg LINE L1 1197 1457 -4627 6 702 2881 214 25 154 chr4 15455850 15456634 -140173486 + L1_Mur2 LINE L1 3959 4623 -1254 6 702 468 86 0 0 chr4 15456634 15456704 -140173416 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 702 2881 214 25 154 chr4 15456704 15456912 -140173208 + L1_Mur2 LINE L1 4624 4800 -1077 6 702 741 76 17 8 chr4 15456912 15457031 -140173089 + (CA)n Simple_repeat Simple_repeat 2 121 0 6 702 2881 214 25 154 chr4 15457031 15457098 -140173022 + L1_Mur2 LINE L1 4801 4882 -995 6 702 515 244 123 18 chr4 15457112 15457275 -140172845 + Lx7 LINE L1 7101 7280 -416 6 702 748 154 43 67 chr4 15457275 15457484 -140172636 - RMER10B LTR ERVL 0 398 195 6 702 1247 141 35 8 chr4 15457464 15457722 -140172398 - RMER10B LTR ERVL -133 265 1 6 702 1081 229 27 109 chr4 15457722 15457801 -140172319 + Lx7 LINE L1 7276 7354 -342 6 702 1298 73 6 0 chr4 15457801 15457980 -140172140 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 702 1081 229 27 109 chr4 15457980 15458341 -140171779 + Lx7 LINE L1 7355 7680 -16 6 702 1823 287 52 37 chr4 15459421 15460174 -140169946 - Lx8 LINE L1 -58 7415 6652 6 702 387 349 0 14 chr4 15461939 15462087 -140168033 + L3 LINE CR1 13 158 -4331 6 702 776 296 15 15 chr4 15462920 15463119 -140167001 - B3 SINE B2 -11 205 7 6 702 731 279 46 71 chr4 15463299 15463538 -140166582 + MTEa LTR MaLR 1 233 -146 6 702 866 196 58 173 chr4 15463538 15464001 -140166119 + RMER17C LTR ERVK 1 410 0 6 702 2093 224 42 68 chr4 15464002 15464621 -140165499 + RMER17C-int LTR ERVK 1 603 -2635 6 702 2140 153 25 76 chr4 15465252 15465741 -140164379 + RMER17C-int LTR ERVK 1126 1589 -1649 6 87 7664 74 7 0 chr4 15465742 15467073 -140163047 - L1_Mus1 LINE L1 -1 6566 5229 6 703 3322 84 4 0 chr4 15467070 15467520 -140162600 + L1_Mus1 LINE L1 4741 5192 -691 6 703 5067 151 30 21 chr4 15467521 15468428 -140161692 + RMER17C-int LTR ERVK 1573 2487 -751 6 703 230 37 0 0 chr4 15468430 15468457 -140161663 + MusHAL1 LINE L1 1 27 -3327 6 703 5431 93 37 7 chr4 15468459 15469463 -140160657 + MusHAL1 LINE L1 4 1034 -2319 6 703 3376 35 2 0 chr4 15469463 15469858 -140160262 - MTA_Mm LTR MaLR 0 396 1 6 703 4084 80 4 3 chr4 15469991 15470594 -140159526 - ORR1A1-int LTR MaLR -532 566 1 6 703 2511 50 71 0 chr4 15470596 15470919 -140159201 - ORR1A1 LTR MaLR 0 346 1 6 703 2420 81 47 3 chr4 15470920 15471304 -140158816 + MusHAL1 LINE L1 1031 1431 -1922 6 703 2174 68 14 0 chr4 15471305 15471599 -140158521 + MusHAL1 LINE L1 2999 3296 -57 6 703 292 169 0 78 chr4 15471642 15471706 -140158414 + RMER17C-int LTR ERVK 2474 2532 -706 6 703 263 160 20 20 chr4 15471706 15471757 -140158363 - LSU-rRNA_Hsa rRNA rRNA -783 4252 4202 6 703 1844 114 358 29 chr4 15471757 15471986 -140158134 + RMER17C-int LTR ERVK 2586 2874 -364 6 703 279 0 0 0 chr4 15471986 15472017 -140158103 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 703 1844 143 142 58 chr4 15472017 15472297 -140157823 + RMER17C-int LTR ERVK 2875 3181 -57 6 703 180 0 0 0 chr4 15472297 15472317 -140157803 + (CACCAT)n Simple_repeat Simple_repeat 4 23 0 6 703 1844 143 142 58 chr4 15472317 15472357 -140157763 + RMER17C-int LTR ERVK 3182 3236 -2 6 703 1179 217 70 50 chr4 15472357 15472759 -140157361 + RMER17C LTR ERVK 1 410 0 6 703 483 316 51 40 chr4 15472759 15472907 -140157213 + MTEb LTR MaLR 230 379 0 6 703 330 332 159 13 chr4 15473320 15473546 -140156574 + L1M5 LINE L1 5561 5819 -305 6 703 688 291 55 51 chr4 15473558 15473810 -140156310 - L1M4 LINE L1 -1426 4720 4473 6 703 6562 44 12 1 chr4 15473810 15474609 -140155511 + RLTR13C2 LTR ERVK 1 808 0 6 703 688 291 55 51 chr4 15474609 15474844 -140155276 - L1M4 LINE L1 -1674 4472 4231 6 703 366 206 0 0 chr4 15475012 15475075 -140155045 + MTEa LTR MaLR 1 63 -316 6 703 342 236 28 0 chr4 15475076 15475220 -140154900 + (TA)n Simple_repeat Simple_repeat 1 148 0 6 703 717 277 70 16 chr4 15475224 15475481 -140154639 + MTEa LTR MaLR 108 378 -1 6 703 29 28 0 0 chr4 15475600 15475636 -140154484 + AT_rich Low_complexity Low_complexity 1 36 0 6 703 376 294 81 83 chr4 15475705 15476226 -140153894 + RLTR15 LTR ERVK 1 528 0 6 703 430 272 142 28 chr4 15476226 15476438 -140153682 - L1MA8 LINE L1 -105 6186 5951 6 703 218 254 32 66 chr4 15478183 15478263 -140151857 - L2c LINE L2 -70 3356 3253 6 703 208 0 0 59 chr4 15479517 15479551 -140150569 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 6 703 734 304 64 77 chr4 15479894 15480263 -140149857 - ORR1E LTR MaLR 0 379 1 6 703 243 316 13 0 chr4 15480263 15480342 -140149778 - MamSINE1 SINE tRNA -19 271 192 6 703 296 380 0 0 chr4 15480717 15480796 -140149324 - ID4 SINE ID -2 81 3 6 703 482 230 47 8 chr4 15481707 15481834 -140148286 - ORR1D2 LTR MaLR 0 370 239 6 703 24 32 0 0 chr4 15481850 15481881 -140148239 + AT_rich Low_complexity Low_complexity 1 31 0 6 703 6709 171 24 1 chr4 15481888 15482893 -140147227 - L1VL4 LINE L1 -3393 2493 1460 6 703 537 16 0 0 chr4 15482893 15482955 -140147165 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 703 6709 199 21 38 chr4 15482955 15483750 -140146370 - L1VL4 LINE L1 -4427 1459 692 6 703 189 0 0 0 chr4 15483922 15483943 -140146177 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 703 320 174 322 0 chr4 15483997 15484053 -140146067 + Lx6 LINE L1 7309 7379 -81 6 703 318 50 0 0 chr4 15484053 15484093 -140146027 + (GGA)n Simple_repeat Simple_repeat 1 40 0 6 703 320 174 322 0 chr4 15484093 15484151 -140145969 + Lx6 LINE L1 7380 7459 -1 6 703 855 99 0 21 chr4 15484156 15484300 -140145820 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 6 703 835 259 45 5 chr4 15484309 15484511 -140145609 + B3 SINE B2 1 210 -6 6 703 423 276 112 57 chr4 15484514 15484810 -140145310 + L1MD3 LINE L1 866 1177 -5223 6 703 584 275 43 31 chr4 15485566 15485821 -140144299 + L1MD3 LINE L1 4743 5000 -1319 6 703 258 237 19 93 chr4 15485976 15486083 -140144037 + B1F1 SINE Alu 49 147 -2 6 703 486 291 57 29 chr4 15486112 15486421 -140143699 + L1MD3 LINE L1 5256 5568 -949 6 703 1106 88 0 7 chr4 15486421 15486570 -140143550 - B1_Mus1 SINE Alu 0 148 1 6 703 377 296 85 112 chr4 15486570 15486662 -140143458 + L1MD3 LINE L1 5569 5657 -860 6 703 993 138 0 0 chr4 15486662 15486807 -140143313 + B1_Mus1 SINE Alu 2 146 -2 6 703 557 28 14 0 chr4 15486807 15486878 -140143242 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 6 703 377 296 85 112 chr4 15486878 15486922 -140143198 + L1MD3 LINE L1 5658 5700 -817 6 703 802 237 108 0 chr4 15486922 15487116 -140143004 + B3 SINE B2 1 215 -1 6 703 377 296 85 112 chr4 15487116 15487262 -140142858 + L1MD3 LINE L1 5701 5812 -705 6 703 285 29 0 0 chr4 15487262 15487296 -140142824 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 703 481 296 85 112 chr4 15487296 15487616 -140142504 + L1MD3 LINE L1 5813 6154 -363 6 703 999 223 126 4 chr4 15487744 15487982 -140142138 + MTD LTR MaLR 3 269 -150 6 703 1474 177 38 49 chr4 15487982 15488356 -140141764 + RLTR11A2 LTR ERVK 1 376 -151 6 703 645 215 176 97 chr4 15488356 15488696 -140141424 - RLTR9A LTR ERVK 0 368 2 6 703 1474 166 32 35 chr4 15488696 15488852 -140141268 + RLTR11A2 LTR ERVK 377 527 0 6 703 598 211 46 39 chr4 15488852 15489005 -140141115 + MTD LTR MaLR 264 417 -2 6 703 819 300 72 79 chr4 15489009 15489325 -140140795 + Lx8 LINE L1 6554 6858 -615 6 703 264 59 0 0 chr4 15489325 15489359 -140140761 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 703 819 300 72 79 chr4 15489359 15489484 -140140636 + Lx8 LINE L1 6859 6992 -481 6 703 330 301 34 112 chr4 15489523 15489818 -140140302 + L1MD3 LINE L1 6143 6414 -92 6 703 241 333 0 0 chr4 15491128 15491188 -140138932 + ID4_ SINE ID 24 83 0 6 703 21 0 0 0 chr4 15491277 15491298 -140138822 + AT_rich Low_complexity Low_complexity 1 21 0 6 703 369 0 0 0 chr4 15492184 15492225 -140137895 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 703 261 309 12 24 chr4 15492514 15492597 -140137523 + ID SINE ID 2 83 -141 6 703 219 319 21 32 chr4 15492597 15492608 -140137512 + BC1_Mm scRNA scRNA 2 94 -58 6 703 2318 214 65 23 chr4 15492736 15493421 -140136699 + L1_Mur3 LINE L1 636 1425 -4455 6 703 495 0 0 0 chr4 15493421 15493476 -140136644 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 6 703 1532 212 121 2 chr4 15493476 15493712 -140136408 + L1_Mur3 LINE L1 1426 1710 -4170 6 703 1629 195 35 13 chr4 15493715 15494027 -140136093 - ORR1B1 LTR MaLR 0 394 76 6 703 681 112 0 0 chr4 15494027 15494125 -140135995 - L1_Mus2 LINE L1 -445 6121 6024 6 703 572 151 11 0 chr4 15494125 15494218 -140135902 - ORR1B1 LTR MaLR -298 96 3 6 703 12461 171 74 102 chr4 15494285 15494471 -140135649 + L1_Mur3 LINE L1 1861 2055 -3825 6 703 351 0 0 0 chr4 15494471 15494510 -140135610 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 703 306 0 0 0 chr4 15494510 15494543 -140135577 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 703 12461 171 74 102 chr4 15494543 15495578 -140134542 + L1_Mur3 LINE L1 2056 3104 -2776 6 703 760 84 53 53 chr4 15495578 15495729 -140134391 + RMER17B LTR ERVK 313 463 -495 6 703 12461 171 74 102 chr4 15495729 15497887 -140132233 + L1_Mur3 LINE L1 3105 5294 -586 6 703 5822 220 73 81 chr4 15497941 15499532 -140130588 + Lx7 LINE L1 6102 7680 -16 6 703 872 264 29 10 chr4 15499535 15499742 -140130378 + B3 SINE B2 4 214 -2 6 703 269 289 207 17 chr4 15500000 15500116 -140130004 + Lx9 LINE L1 6341 6478 -1166 1 703 219 36 0 0 chr4 15500177 15500205 -140129915 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 703 213 341 77 82 chr4 15500325 15500558 -140129562 + MIRb SINE MIR 37 268 0 3 703 224 268 161 11 chr4 15500854 15500941 -140129179 + B1F2 SINE Alu 9 108 -41 4 703 314 306 74 8 chr4 15500961 15501083 -140129037 + MLT2B3 LTR ERVL 17 146 -408 5 703 305 62 0 20 chr4 15501422 15501471 -140128649 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 703 560 271 44 19 chr4 15501560 15501718 -140128402 + B3 SINE B2 1 162 -54 7 703 258 32 0 0 chr4 15502032 15502063 -140128057 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 703 506 322 110 19 chr4 15502065 15502274 -140127846 + MLT1C LTR MaLR 39 266 -201 9 703 393 298 0 9 chr4 15502347 15502452 -140127668 + MLT1C LTR MaLR 361 464 -3 9 703 6676 103 21 20 chr4 15502816 15503942 -140126178 + L1VL2 LINE L1 1 1094 -2521 1 703 490 307 96 28 chr4 15504145 15504369 -140125751 + MLT1E2 LTR MaLR 17 255 -250 1 703 5031 44 0 3 chr4 15504369 15504984 -140125136 + L1Md_F2 LINE L1 5968 6580 -2 1 703 398 344 71 102 chr4 15504984 15505112 -140125008 + MLT1E2 LTR MaLR 256 361 -144 1 703 38384 7 1 1 chr4 15505112 15510884 -140119236 + L1Md_A LINE L1 1 5586 -297 1 703 9039 1 0 0 chr4 15510884 15511879 -140118241 + L1Md_A LINE L1 5587 6581 -1 1 703 305 352 54 15 chr4 15511896 15512026 -140118094 + MLT1E2 LTR MaLR 344 478 -27 1 703 3222 209 94 16 chr4 15512340 15512717 -140117403 + Lx6 LINE L1 6483 6881 -579 1 703 447 19 0 0 chr4 15512717 15512769 -140117351 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 703 3222 209 94 16 chr4 15512769 15513135 -140116985 + Lx6 LINE L1 6882 7283 -177 1 703 29 28 0 0 chr4 15513164 15513200 -140116920 + AT_rich Low_complexity Low_complexity 1 36 0 1 703 338 323 129 38 chr4 15513458 15513667 -140116453 + MLT1D LTR MaLR 20 247 -258 1 703 32 0 0 0 chr4 15513954 15513986 -140116134 + AT_rich Low_complexity Low_complexity 1 32 0 1 703 862 311 90 49 chr4 15514044 15514433 -140115687 + MTD LTR MaLR 1 405 -14 1 703 510 271 19 9 chr4 15514602 15514710 -140115410 + PB1D9 SINE Alu 7 115 -5 2 703 3918 130 43 39 chr4 15515622 15516294 -140113826 - Lx3B LINE L1 -472 6501 5827 2 703 4290 80 53 24 chr4 15516294 15516920 -140113200 - L1_Mus2 LINE L1 0 6566 5923 2 703 5861 172 54 51 chr4 15516920 15518883 -140111237 + Lx LINE L1 4687 6644 -10 2 703 1188 220 120 29 chr4 15519056 15519398 -140110722 - ORR1C2 LTR MaLR -11 373 1 2 703 614 262 15 51 chr4 15519658 15519855 -140110265 + B3A SINE B2 2 191 -7 2 703 648 236 125 11 chr4 15520018 15520202 -140109918 - B3 SINE B2 -10 206 2 2 703 433 304 131 28 chr4 15520208 15520384 -140109736 + LTR82B Low_complexity ERVL 18 211 -619 2 703 531 313 44 78 chr4 15520254 15520524 -140109596 + LTR82B Low_complexity ERVL 136 396 -434 2 703 323 385 34 38 chr4 15521057 15521292 -140108828 + MIR SINE MIR 3 236 -26 2 703 714 283 62 23 chr4 15521328 15521680 -140108440 - MLT1B LTR MaLR 0 390 5 3 703 685 299 104 12 chr4 15522122 15522362 -140107758 + B4A SINE B4 29 290 -2 3 703 296 280 0 0 chr4 15524041 15524116 -140106004 + RLTR24 LTR ERV1 1 75 -454 3 703 286 285 40 122 chr4 15524274 15524422 -140105698 + RLTR24 LTR ERV1 321 456 -73 3 703 429 20 0 0 chr4 15524520 15524570 -140105550 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 703 898 187 20 15 chr4 15525070 15525271 -140104849 - L1_Mur3 LINE L1 -3 5877 5676 3 703 246 303 40 0 chr4 15525334 15525433 -140104687 - LTR87 LTR ERVL? -106 518 416 3 703 461 346 73 43 chr4 15525450 15525779 -140104341 - LTR87 LTR ERVL? -273 351 13 3 703 6562 204 44 22 chr4 15525779 15527024 -140103096 - Lx7 LINE L1 -1586 6110 4825 3 703 279 79 0 0 chr4 15527024 15527062 -140103058 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 703 6562 194 43 21 chr4 15527062 15527478 -140102642 - Lx7 LINE L1 -1056 4824 4411 3 703 4426 40 0 0 chr4 15527488 15528016 -140102104 - L1Md_F2 LINE L1 -32 5851 5324 3 703 5941 52 0 1 chr4 15528016 15528747 -140101373 + L1Md_F2 LINE L1 5841 6570 -12 3 703 1380 203 111 40 chr4 15528754 15528968 -140101152 - Lx7 LINE L1 -1475 4405 4206 3 703 480 77 0 0 chr4 15528968 15529033 -140101087 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 703 1380 203 111 40 chr4 15529033 15529243 -140100877 - Lx7 LINE L1 -1675 4205 3951 3 703 864 263 13 9 chr4 15529249 15529479 -140100641 + Lx6 LINE L1 7051 7281 -179 4 703 286 321 19 19 chr4 15529550 15529658 -140100462 + Lx7 LINE L1 7189 7296 -400 4 703 252 213 9 61 chr4 15529677 15529792 -140100328 + T-rich Low_complexity Low_complexity 1 109 0 4 703 27 29 0 0 chr4 15529862 15529896 -140100224 + AT_rich Low_complexity Low_complexity 1 34 0 4 703 414 0 0 0 chr4 15530013 15530059 -140100061 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 703 7100 172 65 6 chr4 15530586 15532004 -140098116 - Lx5 LINE L1 0 7050 5543 4 703 275 316 28 39 chr4 15534132 15534310 -140095810 - MIR SINE MIR -82 180 5 4 703 433 196 14 14 chr4 15534333 15534478 -140095642 + (TGGA)n Simple_repeat Simple_repeat 4 148 0 4 703 180 0 0 0 chr4 15536407 15536427 -140093693 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 4 703 1399 55 0 0 chr4 15536427 15536608 -140093512 - L1_Mus2 LINE L1 -10 6556 6376 4 703 479 254 132 0 chr4 15536647 15536816 -140093304 - MTEa LTR MaLR -3 376 182 5 703 520 263 8 8 chr4 15536912 15537031 -140093089 - MTEa LTR MaLR -200 179 61 5 703 229 291 117 107 chr4 15537031 15537099 -140093021 - MLT2B3 LTR ERVL -336 197 21 5 703 269 343 9 9 chr4 15537213 15537322 -140092798 + PB1D10 SINE Alu 1 109 -8 5 703 192 77 0 0 chr4 15537499 15537525 -140092595 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 703 1268 292 80 0 chr4 15537595 15537934 -140092186 + MTE2b LTR MaLR 1 366 -13 5 703 3406 323 64 20 chr4 15537946 15539163 -140090957 + MTE2b-int LTR MaLR 1 1271 -309 5 703 759 216 84 66 chr4 15539181 15539468 -140090652 + RLTR40 LTR ERVK 21 312 -505 5 703 321 312 18 0 chr4 15539434 15539543 -140090577 + MTE2b-int LTR MaLR 1470 1580 0 5 703 784 268 99 12 chr4 15539587 15539869 -140090251 + MTE2b LTR MaLR 73 379 0 5 703 405 58 0 0 chr4 15539945 15539997 -140090123 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 703 496 82 47 0 chr4 15540057 15540142 -140089978 - L1_Mus3 LINE L1 -7 6631 6543 5 703 347 272 0 58 chr4 15540170 15540256 -140089864 + ID4_ SINE ID 3 83 0 5 703 324 70 0 0 chr4 15540333 15540376 -140089744 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 703 42 20 0 0 chr4 15540717 15540766 -140089354 + AT_rich Low_complexity Low_complexity 1 49 0 6 703 21 0 0 0 chr4 15540968 15540989 -140089131 + AT_rich Low_complexity Low_complexity 1 21 0 6 703 614 92 8 8 chr4 15541873 15541994 -140088126 + L1_Mus4 LINE L1 6512 6632 -4 6 703 606 329 124 56 chr4 15542053 15542514 -140087606 - MLT1D LTR MaLR 0 505 14 6 703 371 233 10 0 chr4 15542580 15542683 -140087437 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 703 1173 158 51 0 chr4 15542996 15543211 -140086909 - URR1A DNA MER1_type 0 226 1 6 703 641 334 27 71 chr4 15543272 15543639 -140086481 - ORR1E LTR MaLR -6 353 3 6 703 23 0 0 0 chr4 15544817 15544840 -140085280 + AT_rich Low_complexity Low_complexity 1 23 0 6 703 4655 245 54 99 chr4 15545030 15545588 -140084532 + Lx9 LINE L1 5984 6479 -1165 6 703 1020 92 0 19 chr4 15545588 15545744 -140084376 + L1_Mus2 LINE L1 6413 6565 -1 7 703 4166 85 23 0 chr4 15545752 15546319 -140083801 + L1_Mus1 LINE L1 5986 6565 -2 7 703 4655 245 54 99 chr4 15546319 15547485 -140082635 + Lx9 LINE L1 6480 7638 -6 6 703 225 83 0 0 chr4 15547919 15547955 -140082165 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 703 315 128 0 0 chr4 15548397 15548444 -140081676 + L1_Mur3 LINE L1 55 101 -7627 7 703 2973 219 31 11 chr4 15548469 15549112 -140081008 + L1_Mur3 LINE L1 563 1218 -6510 7 703 4522 185 73 97 chr4 15549131 15550456 -140079664 + L1_Mur3 LINE L1 4075 5368 -512 7 703 18258 126 50 8 chr4 15550467 15552126 -140077994 + L1Md_F LINE L1 380 2102 -3781 7 703 3100 84 5 21 chr4 15552126 15552562 -140077558 - L1Md_F2 LINE L1 -1 6581 6153 7 703 18258 105 4 11 chr4 15552562 15553464 -140076656 + L1Md_F LINE L1 2103 2997 -2886 7 703 800 59 8 0 chr4 15553464 15553583 -140076537 + (CAAAA)n Simple_repeat Simple_repeat 2 121 0 7 703 18258 105 4 11 chr4 15553583 15554546 -140075574 + L1Md_F LINE L1 2998 3964 -1919 7 703 252 0 0 0 chr4 15554556 15554584 -140075536 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 703 267 254 74 66 chr4 15554596 15554718 -140075402 - Lx7 LINE L1 -1630 6066 5944 7 703 3160 203 19 18 chr4 15554733 15555351 -140074769 + Lx6 LINE L1 6180 6798 -662 7 703 1417 256 15 3 chr4 15555348 15555681 -140074439 - Lx7 LINE L1 -547 7149 6813 8 703 417 250 60 0 chr4 15555721 15555837 -140074283 + Lx7 LINE L1 7247 7369 -327 8 703 22 35 0 0 chr4 15555858 15555887 -140074233 + AT_rich Low_complexity Low_complexity 1 29 0 8 703 226 184 0 0 chr4 15555919 15555957 -140074163 + Lx7 LINE L1 7366 7403 -293 8 703 659 65 11 0 chr4 15556198 15556291 -140073829 + (TATG)n Simple_repeat Simple_repeat 4 97 0 8 703 521 283 45 13 chr4 15556291 15556445 -140073675 - B3A SINE B2 -39 159 1 8 703 2554 176 36 50 chr4 15556892 15557026 -140073094 + Lx6 LINE L1 5304 5437 -443 8 703 4363 45 0 0 chr4 15557026 15557555 -140072565 + L1Md_F2 LINE L1 6054 6582 0 8 703 2554 176 36 50 chr4 15557555 15557723 -140072397 + Lx6 LINE L1 5438 5592 -288 8 703 2665 92 8 18 chr4 15557723 15558122 -140071998 + L1_Mus3 LINE L1 6240 6634 -4 8 703 6594 231 52 35 chr4 15558122 15559957 -140070163 + Lx6 LINE L1 5589 7455 -5 8 703 1041 177 10 20 chr4 15560076 15560278 -140069842 + Lx4A LINE L1 6438 6637 -421 8 703 466 264 40 24 chr4 15560676 15560800 -140069320 - MER3 DNA MER1_type -82 127 2 8 703 406 250 0 0 chr4 15561492 15561580 -140068540 + Lx7 LINE L1 6617 6704 -992 9 703 2005 201 75 11 chr4 15561568 15562005 -140068115 - Lx6 LINE L1 -268 7192 6728 9 703 1395 178 303 6 chr4 15566536 15566859 -140063261 + MTC LTR MaLR 1 419 -2 9 703 6361 108 20 7 chr4 15566985 15567931 -140062189 + RMER17B LTR ERVK 1 958 0 9 703 236 184 0 0 chr4 15568290 15568328 -140061792 - ID4 SINE ID -41 42 5 9 703 229 354 30 30 chr4 15568346 15568477 -140061643 + LTR84b LTR ERVL 280 410 -351 9 703 21 36 0 0 chr4 15569653 15569681 -140060439 + AT_rich Low_complexity Low_complexity 1 28 0 9 703 1738 175 34 34 chr4 15569710 15570094 -140060026 + ORR1C2 LTR MaLR 1 384 0 9 703 423 329 6 30 chr4 15571612 15571781 -140058339 + RSINE1 SINE B4 1 165 0 9 703 356 275 28 20 chr4 15571957 15572150 -140057970 + L1MA5 LINE L1 5686 5926 -374 9 703 22 0 0 0 chr4 15572366 15572388 -140057732 + AT_rich Low_complexity Low_complexity 1 22 0 1 703 331 333 192 5 chr4 15572570 15572784 -140057336 - L2 LINE L2 -1870 1549 1296 1 703 213 279 115 18 chr4 15572843 15572956 -140057164 - BC1_Mm scRNA scRNA -23 129 6 1 703 372 349 154 24 chr4 15573220 15573467 -140056653 - L2 LINE L2 -859 2560 2282 1 703 205 361 28 0 chr4 15573507 15573605 -140056515 + MIRc SINE MIR 8 113 -155 1 703 341 294 159 25 chr4 15573661 15573818 -140056302 - RLTR9A LTR ERVK -95 273 96 1 703 652 285 45 11 chr4 15574144 15574410 -140055710 - RLTR6-int LTR ERV1 -117 7661 7387 1 703 2343 116 5 28 chr4 15574405 15574795 -140055325 - RMER16-int LTR ERVK -1068 4338 3958 1 703 3992 32 6 0 chr4 15578347 15578814 -140051306 + L1Md_T LINE L1 6112 6581 -1 1 703 1047 112 0 0 chr4 15581178 15581348 -140048772 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 703 5584 61 0 0 chr4 15582093 15582826 -140047294 - L1Md_F2 LINE L1 -123 5760 5028 1 703 5937 49 29 16 chr4 15582826 15583591 -140046529 + L1Md_F2 LINE L1 5789 6563 -19 1 703 180 0 0 0 chr4 15583597 15583617 -140046503 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 703 903 176 165 0 chr4 15583869 15584057 -140046063 + URR1B DNA MER1_type 7 225 0 1 703 304 279 78 45 chr4 15584074 15584228 -140045892 + MER5A DNA MER1_type 11 169 -20 1 703 232 368 78 36 chr4 15584542 15584796 -140045324 - MIRb SINE MIR -10 258 3 1 703 883 262 32 91 chr4 15585611 15586105 -140044015 + RMER2 LTR ERV1 1 563 -4 1 703 183 340 112 10 chr4 15586568 15586666 -140043454 + MIRm SINE MIR 30 137 -139 1 703 379 337 52 25 chr4 15587140 15587508 -140042612 - L1M5 LINE L1 -545 5634 5257 1 703 488 360 55 92 chr4 15589219 15589675 -140040445 + LTR33A LTR ERVL 7 445 -75 1 703 297 143 0 3 chr4 15590673 15590729 -140039391 + B1F1 SINE Alu 90 144 -5 1 703 234 293 15 89 chr4 15591382 15591517 -140038603 + B3A SINE B2 1 125 -73 1 703 363 23 0 0 chr4 15591691 15591735 -140038385 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 703 465 320 113 12 chr4 15592019 15592275 -140037845 + B4A SINE B4 1 282 -10 1 703 234 172 52 0 chr4 15592322 15592380 -140037740 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 703 3317 48 2 0 chr4 15592441 15592836 -140037284 + MTA_Mm LTR MaLR 1 396 0 1 703 333 292 0 0 chr4 15592979 15593051 -140037069 - ID4_ SINE ID -10 73 2 1 703 280 331 74 5 chr4 15593247 15593524 -140036596 - L1MD3 LINE L1 -2044 6746 6440 1 703 21 0 0 0 chr4 15594125 15594146 -140035974 + AT_rich Low_complexity Low_complexity 1 21 0 1 703 387 325 168 29 chr4 15594227 15594645 -140035475 - L1MD3 LINE L1 -1887 5054 4579 1 703 3097 118 92 12 chr4 15594848 15595218 -140034902 - RLTR22_Mur LTR ERVK -1042 806 406 1 703 4792 53 2 3 chr4 15595218 15595809 -140034311 + L1_Mus2 LINE L1 5977 6566 0 1 703 3097 118 92 12 chr4 15595809 15596002 -140034118 - RLTR22_Mur LTR ERVK -1443 405 198 1 703 230 232 0 55 chr4 15596314 15596387 -140033733 - Cheshire DNA MER1_type -1297 1123 1055 1 703 326 342 90 20 chr4 15596388 15596588 -140033532 - L1MD3 LINE L1 -2679 4262 4049 1 703 394 331 29 22 chr4 15596589 15596725 -140033395 + MER20 DNA MER1_type 8 144 -75 1 703 205 184 0 0 chr4 15596739 15596777 -140033343 + (CAT)n Simple_repeat Simple_repeat 3 40 0 1 703 333 277 133 47 chr4 15596913 15597276 -140032844 - L1MD3 LINE L1 -3000 3941 3548 1 87 1164 51 0 0 chr4 15597526 15597664 -140032456 - B1_Mus2 SINE Alu -9 138 1 1 704 341 301 175 52 chr4 15597669 15597872 -140032248 - L1MD3 LINE L1 -3652 3289 3056 1 704 369 0 0 0 chr4 15597872 15597913 -140032207 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 704 518 291 170 29 chr4 15597913 15598068 -140032052 - L1MD3 LINE L1 -3886 3055 2891 1 704 1819 35 18 0 chr4 15598068 15598295 -140031825 - L1Md_F3 LINE L1 -1 6583 6353 1 704 518 285 168 17 chr4 15598295 15598538 -140031582 - L1MD3 LINE L1 -4132 2890 2601 1 704 3343 88 107 57 chr4 15598725 15599265 -140030855 + RMER2 LTR ERV1 1 567 0 1 704 11890 76 11 2 chr4 15599379 15601718 -140028402 - L1Md_F2 LINE L1 -2 6580 4232 1 704 648 111 0 0 chr4 15601792 15601891 -140028229 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 704 1962 158 54 3 chr4 15602713 15603081 -140027039 - RMER1A Other Other -19 1011 625 1 704 929 140 0 0 chr4 15603084 15603227 -140026893 - RLTR15 LTR ERVK 0 359 217 1 704 339 152 0 60 chr4 15603227 15603281 -140026839 - L1Md_F2 LINE L1 -12 6570 6517 1 704 195 42 0 0 chr4 15603281 15603305 -140026815 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 1 704 6397 57 2 2 chr4 15603305 15604146 -140025974 - L1Md_F2 LINE L1 -66 6516 5642 1 704 1002 215 60 9 chr4 15604146 15604362 -140025758 - RLTR15 LTR ERVK -130 229 3 1 704 1686 214 51 0 chr4 15604364 15604830 -140025290 - RMER1A Other Other -403 627 116 1 704 380 273 196 40 chr4 15604934 15605235 -140024885 - L1MD3 LINE L1 -6006 417 70 1 704 785 56 0 9 chr4 15605356 15605377 -140024743 + (GAA)n Simple_repeat Simple_repeat 1 21 0 1 704 1126 73 0 27 chr4 15605377 15605561 -140024559 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 704 785 56 0 9 chr4 15605561 15605647 -140024473 + (GAA)n Simple_repeat Simple_repeat 1 86 0 1 704 250 288 53 27 chr4 15605980 15606055 -140024065 + MLT1C LTR MaLR 346 422 -45 1 704 430 310 31 0 chr4 15607000 15607129 -140022991 + B4 SINE B4 29 161 -131 1 704 189 0 0 0 chr4 15607129 15607150 -140022970 + (CAGC)n Simple_repeat Simple_repeat 3 23 0 1 704 1048 263 4 11 chr4 15607432 15607705 -140022415 + Lx7 LINE L1 7097 7367 -329 1 704 629 148 20 85 chr4 15607774 15607973 -140022147 + Lx7 LINE L1 7355 7540 -156 1 704 1900 222 22 5 chr4 15608740 15609152 -140020968 - MTD LTR MaLR 0 419 1 1 704 5988 153 29 4 chr4 15609438 15610527 -140019593 + Lx4B LINE L1 5882 6998 -60 1 704 21 0 0 0 chr4 15611689 15611710 -140018410 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 387 299 100 29 chr4 15611823 15612161 -140017959 + ORR1E LTR MaLR 1 374 -5 1 704 369 333 16 0 chr4 15613377 15613506 -140016614 + MER5A DNA MER1_type 20 150 -39 1 704 1116 180 20 0 chr4 15613920 15614116 -140016004 + ORR1E LTR MaLR 1 200 -159 1 704 1370 218 54 61 chr4 15614116 15614560 -140015560 + RMER16 LTR ERVK 1 533 0 1 704 399 292 124 7 chr4 15614560 15614705 -140015415 + ORR1E LTR MaLR 218 379 0 1 704 406 290 75 22 chr4 15615934 15616068 -140014052 - B1F1 SINE Alu -4 145 5 1 704 380 390 31 19 chr4 15616255 15616417 -140013703 + MLT1G3 LTR MaLR 11 174 -421 1 704 354 320 89 45 chr4 15616453 15616680 -140013440 + MLT1G3 LTR MaLR 242 571 -8 1 704 293 254 0 0 chr4 15617116 15617175 -140012945 - L1M5 LINE L1 -654 5586 5528 1 704 531 252 41 0 chr4 15618116 15618239 -140011881 - B1_Mur1 SINE Alu 0 149 22 1 704 23 54 0 0 chr4 15618375 15618412 -140011708 + AT_rich Low_complexity Low_complexity 1 37 0 1 704 371 331 7 49 chr4 15619303 15619446 -140010674 + ID_B1 SINE B4 40 176 -48 1 704 330 26 0 0 chr4 15619448 15619487 -140010633 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 704 689 107 0 8 chr4 15619492 15619624 -140010496 + (GA)n Simple_repeat Simple_repeat 1 131 0 1 704 22 56 0 0 chr4 15620498 15620534 -140009586 + AT_rich Low_complexity Low_complexity 1 36 0 1 704 1741 105 27 50 chr4 15620542 15620843 -140009277 - Lx3A LINE L1 -7 6974 6681 1 704 709 283 38 0 chr4 15620865 15621024 -140009096 - B3A SINE B2 -26 172 8 1 704 24 0 0 0 chr4 15621090 15621114 -140009006 + AT_rich Low_complexity Low_complexity 1 24 0 1 704 536 296 114 45 chr4 15621374 15621797 -140008323 - MLT1E2 LTR MaLR 0 560 122 1 704 1302 328 50 43 chr4 15622048 15622111 -140008009 - L1_Rod LINE L1 -70 5810 5747 1 704 456 19 0 0 chr4 15622111 15622164 -140007956 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 704 1359 307 37 31 chr4 15622164 15623093 -140007027 - L1_Rod LINE L1 -134 5746 4787 1 704 537 16 0 0 chr4 15623290 15623352 -140006768 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 704 198 0 0 0 chr4 15623424 15623446 -140006674 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 704 864 267 3 90 chr4 15623643 15623931 -140006189 - B4A SINE B4 -25 267 5 1 704 1387 192 35 171 chr4 15623977 15624410 -140005710 + ORR1D1 LTR MaLR 1 374 0 1 704 384 275 152 66 chr4 15624496 15624904 -140005216 - L1_Rod LINE L1 -1409 4471 4058 1 704 517 333 28 0 chr4 15624905 15625049 -140005071 - MLT1E2 LTR MaLR -479 148 1 1 704 318 206 0 0 chr4 15625470 15625538 -140004582 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 704 459 253 0 0 chr4 15625548 15625631 -140004489 - B1_Mur3 SINE Alu -64 85 3 1 704 30 27 0 0 chr4 15626331 15626368 -140003752 + AT_rich Low_complexity Low_complexity 1 37 0 1 704 671 379 76 96 chr4 15626441 15627189 -140002931 + MTEa-int LTR MaLR 548 1280 -300 1 704 360 0 0 0 chr4 15627256 15627296 -140002824 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 704 838 255 124 8 chr4 15627448 15627669 -140002451 + MTEa-int LTR MaLR 1310 1558 -22 1 704 684 0 0 0 chr4 15627669 15627745 -140002375 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 1 704 838 255 124 8 chr4 15627745 15627764 -140002356 + MTEa-int LTR MaLR 1559 1577 -3 1 704 614 309 77 66 chr4 15627777 15628051 -140002069 + MTEa LTR MaLR 9 285 -94 1 704 353 236 138 116 chr4 15628394 15628619 -140001501 - L1MB8 LINE L1 -5 6173 5944 1 704 366 254 55 16 chr4 15628715 15628843 -140001277 - L1MB8 LINE L1 -429 5755 5623 1 704 660 236 166 1 chr4 15628845 15629028 -140001092 - MTD LTR MaLR -14 405 205 1 704 22 0 0 0 chr4 15629191 15629213 -140000907 + AT_rich Low_complexity Low_complexity 1 22 0 1 704 262 358 45 8 chr4 15629298 15629528 -140000592 + MLT1E2 LTR MaLR 263 625 -2 1 704 370 296 19 0 chr4 15629543 15629672 -140000448 - L1MB8 LINE L1 -586 5594 5462 1 704 486 303 77 5 chr4 15629679 15629888 -140000232 - L1MB8 LINE L1 -1131 5015 4792 1 704 368 330 31 5 chr4 15630043 15630238 -139999882 - L1MB8 LINE L1 -1463 4683 4484 1 704 614 197 92 30 chr4 15630316 15630447 -139999673 - B1_Mus1 SINE Alu 0 148 10 1 704 303 252 96 10 chr4 15630466 15630570 -139999550 - L1MB8 LINE L1 -1686 4460 4348 1 704 2892 83 13 0 chr4 15630811 15631206 -139998914 - MTB LTR MaLR 0 400 1 1 704 342 0 0 0 chr4 15631304 15631342 -139998778 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 704 713 240 20 35 chr4 15631342 15631545 -139998575 - B3 SINE B2 -16 200 1 1 704 330 153 35 18 chr4 15631736 15631849 -139998271 + (TG)n Simple_repeat Simple_repeat 1 115 0 1 704 427 138 47 35 chr4 15631910 15632082 -139998038 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 704 320 226 21 41 chr4 15632082 15632179 -139997941 + (GTGTG)n Simple_repeat Simple_repeat 1 95 0 1 704 440 171 42 18 chr4 15632204 15632371 -139997749 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 704 315 206 29 25 chr4 15632385 15632631 -139997489 + (TG)n Simple_repeat Simple_repeat 1 247 0 1 704 203 154 62 0 chr4 15632641 15632706 -139997414 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 704 625 282 78 82 chr4 15632737 15633030 -139997090 - B4A SINE B4 0 292 1 1 704 803 213 92 5 chr4 15636229 15636413 -139993707 + RMER15 LTR ERVL 371 570 -5 1 704 267 342 25 0 chr4 15636557 15636636 -139993484 - ID4 SINE ID 0 83 3 1 704 3282 100 4 2 chr4 15636769 15637240 -139992880 + L1_Mus3 LINE L1 6161 6632 -6 1 704 2827 163 29 12 chr4 15637618 15638133 -139991987 - RLTR28 LTR ERVL 0 524 1 1 704 2653 10 0 0 chr4 15638306 15638613 -139991507 - LTRIS_Mm LTR ERV1 -175 307 1 2 704 465 196 20 0 chr4 15638613 15638715 -139991405 + RMER1A Other Other 927 1030 0 2 704 4787 25 0 0 chr4 15638733 15639291 -139990829 + L1Md_F2 LINE L1 5029 5586 -297 2 704 7949 51 1 6 chr4 15639292 15640290 -139989830 + L1Md_F2 LINE L1 5588 6580 -2 2 704 581 195 0 8 chr4 15640301 15640420 -139989700 + Lx6 LINE L1 7323 7440 -20 2 704 236 325 72 0 chr4 15643245 15643328 -139986792 - MER5A1 DNA MER1_type -5 161 73 2 704 255 356 50 25 chr4 15643783 15643904 -139986216 + MTEa LTR MaLR 1 124 -255 2 704 234 325 52 17 chr4 15644053 15644169 -139985951 + MTEa LTR MaLR 254 373 -6 2 704 210 247 23 105 chr4 15644887 15644973 -139985147 + L2c LINE L2 3294 3372 -15 2 704 607 315 80 17 chr4 15645123 15645475 -139984645 + L1M4 LINE L1 5423 5796 -388 2 704 2187 167 62 0 chr4 15645483 15645872 -139984248 + MTC LTR MaLR 1 413 -8 2 704 195 250 83 0 chr4 15646346 15646406 -139983714 - MIR SINE MIR -106 156 92 2 704 291 309 41 0 chr4 15646501 15646598 -139983522 + PB1D10 SINE Alu 1 101 -16 2 704 213 108 0 0 chr4 15646613 15646650 -139983470 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 704 312 293 0 12 chr4 15646650 15646733 -139983387 + GA-rich Low_complexity Low_complexity 3 84 0 2 704 1874 64 41 15 chr4 15647559 15647828 -139982292 + L1Md_F2 LINE L1 6292 6567 -15 2 704 1298 226 74 64 chr4 15649061 15649533 -139980587 + Lx7 LINE L1 7093 7569 -127 2 704 762 285 14 5 chr4 15649885 15650093 -139980027 + B3 SINE B2 1 210 -6 2 704 218 358 34 51 chr4 15650200 15650367 -139979753 - MIRb SINE MIR -58 204 44 2 704 378 0 0 0 chr4 15650371 15650413 -139979707 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 704 338 317 86 39 chr4 15651035 15651291 -139978829 - HAL1b LINE L1 -16 1993 1726 2 704 1914 285 86 39 chr4 15651357 15652099 -139978021 + Lx5 LINE L1 6255 7031 -19 2 704 489 16 0 0 chr4 15652325 15652388 -139977732 + B1_Mur4 SINE Alu 88 150 0 2 704 438 65 0 0 chr4 15652388 15652450 -139977670 + (A)n Simple_repeat Simple_repeat 1 62 0 2 704 329 352 53 43 chr4 15652962 15653244 -139976876 + L1MEe LINE L1 492 776 -4078 2 704 681 320 80 18 chr4 15653251 15653537 -139976583 - MER2 DNA MER2_type -32 313 10 2 704 698 53 11 0 chr4 15653816 15653911 -139976209 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 2 704 21 36 0 0 chr4 15654056 15654084 -139976036 + AT_rich Low_complexity Low_complexity 1 28 0 2 704 2969 159 60 60 chr4 15654104 15655250 -139974870 - RMER12 LTR ERVK 0 1404 5 2 704 1243 170 60 51 chr4 15655256 15655522 -139974598 - ORR1C1 LTR MaLR -5 389 142 2 704 968 63 14 0 chr4 15655522 15655664 -139974456 - L1_Mus2 LINE L1 -2 6564 6421 2 704 1230 246 51 114 chr4 15655664 15655810 -139974310 - ORR1C1 LTR MaLR -253 141 3 2 704 426 342 131 28 chr4 15655835 15656116 -139974004 - MER67C LTR ERV1 -323 388 74 2 704 333 0 0 0 chr4 15656116 15656153 -139973967 + (CAA)n Simple_repeat Simple_repeat 2 38 0 2 704 426 342 131 28 chr4 15656153 15656223 -139973897 - MER67C LTR ERV1 -638 73 2 2 704 1151 250 114 3 chr4 15656431 15656748 -139973372 - MTEa LTR MaLR -1 378 27 2 704 274 303 0 84 chr4 15657583 15657666 -139972454 - PB1D7 SINE Alu -2 118 43 2 704 336 312 62 0 chr4 15657705 15657849 -139972271 - RSINE1 SINE B4 -10 155 3 2 704 458 285 108 0 chr4 15657863 15657993 -139972127 + ID_B1 SINE B4 79 222 -2 2 704 5517 112 1 67 chr4 15658042 15658990 -139971130 - L1_Mm LINE L1 -486 5397 4512 2 704 431 35 0 17 chr4 15659078 15659136 -139970984 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 704 207 0 0 0 chr4 15659510 15659533 -139970587 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 704 1675 253 116 22 chr4 15659867 15660101 -139970019 - L1MA6 LINE L1 -3 6297 6058 2 704 7939 37 0 4 chr4 15660101 15661034 -139969086 - RLTR13B3 LTR ERVK 0 929 1 2 704 459 0 0 0 chr4 15661034 15661085 -139969035 + (TTC)n Simple_repeat Simple_repeat 1 51 0 2 704 1675 253 116 22 chr4 15661085 15661572 -139968548 - L1MA6 LINE L1 -243 6057 5509 2 704 31 0 0 0 chr4 15661738 15661769 -139968351 + AT_rich Low_complexity Low_complexity 1 31 0 2 704 230 392 25 0 chr4 15662253 15662332 -139967788 + RSINE1 SINE B4 83 163 -2 2 704 8818 101 8 17 chr4 15662537 15664782 -139965338 + L1Md_F2 LINE L1 238 2441 -3442 2 704 13347 69 11 17 chr4 15664787 15666626 -139963494 + L1Md_F2 LINE L1 3759 5586 -297 2 704 7474 72 3 11 chr4 15666626 15667617 -139962503 + L1Md_F2 LINE L1 5587 6569 -13 2 704 449 182 39 8 chr4 15670390 15670517 -139959603 + Lx7 LINE L1 7417 7547 -149 2 704 306 254 42 0 chr4 15670521 15670592 -139959528 + B4A SINE B4 217 290 -2 2 704 306 345 13 109 chr4 15671085 15671241 -139958879 - ID_B1 SINE B4 -5 219 79 2 704 455 279 74 138 chr4 15671882 15672030 -139958090 + RLTR18 LTR ERVK 312 459 -157 2 704 180 0 0 0 chr4 15672030 15672050 -139958070 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 704 1304 89 17 6 chr4 15672050 15672230 -139957890 - B2_Mm2 SINE B2 -12 183 2 2 704 455 279 74 138 chr4 15672230 15672405 -139957715 + RLTR18 LTR ERVK 460 614 -2 2 704 575 256 90 28 chr4 15672415 15672592 -139957528 - MTD LTR MaLR -231 188 1 2 704 1975 152 69 24 chr4 15673714 15674091 -139956029 - ORR1B1 LTR MaLR 0 394 1 2 704 405 59 0 4 chr4 15674130 15674184 -139955936 - LTRIS_Mus LTR ERV1 0 587 536 2 704 3223 54 26 72 chr4 15674184 15674641 -139955479 + RLTR10C LTR ERVK 1 436 0 2 704 385 101 0 115 chr4 15674641 15674664 -139955456 - LTRIS_Mus LTR ERV1 -53 429 414 2 704 1157 54 0 0 chr4 15674664 15674813 -139955307 + MMERVK10C-int LTR ERVK 24 172 -7409 2 704 246 260 0 0 chr4 15674813 15674863 -139955257 + RLTR27 LTR ERVK 223 272 -37 2 704 350 65 0 0 chr4 15674863 15674909 -139955211 + MMERVK10C-int LTR ERVK 222 267 -7314 2 704 294 216 0 47 chr4 15674991 15675098 -139955022 + A-rich Low_complexity Low_complexity 3 104 0 2 704 315 111 0 0 chr4 15675098 15675143 -139954977 + RLTR10-int LTR ERVK 93 137 -6405 2 704 1379 12 0 0 chr4 15675146 15675309 -139954811 + RLTR10-int LTR ERVK 652 814 -1173 2 704 15075 53 1 3 chr4 15675304 15677240 -139952880 + MMERVK10C-int LTR ERVK 3879 5810 -1771 2 704 7179 41 2 51 chr4 15677226 15678210 -139951910 + MMERVK10C-int LTR ERVK 6646 7581 0 2 704 2645 48 224 3 chr4 15678210 15678567 -139951553 + RLTR10C LTR ERVK 1 436 0 2 704 3256 35 2 0 chr4 15678567 15678966 -139951154 - LTRIS_Mm LTR ERV1 -82 400 1 2 704 303 387 22 16 chr4 15679227 15679411 -139950709 + MIR SINE MIR 68 252 -10 2 704 2146 177 67 4 chr4 15679696 15680177 -139949943 + Lx9 LINE L1 7134 7644 0 2 704 209 337 35 24 chr4 15680926 15681011 -139949109 + L2b LINE L2 3284 3369 -6 2 704 814 194 22 11 chr4 15682121 15682303 -139947817 + B2_Mm2 SINE B2 2 185 -10 2 704 491 321 36 30 chr4 15682338 15682505 -139947615 + B3 SINE B2 25 192 -24 2 704 423 0 0 0 chr4 15682520 15682567 -139947553 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 704 218 156 156 0 chr4 15682632 15682677 -139947443 + PB1 SINE Alu 53 104 -23 2 704 229 299 55 0 chr4 15682726 15682853 -139947267 + L1M2 LINE L1 4515 4648 -1495 2 704 530 283 34 40 chr4 15682852 15682877 -139947243 + L1M3 LINE L1 3773 3796 -2344 2 704 4674 52 5 3 chr4 15682877 15683461 -139946659 - L1Md_F2 LINE L1 -1 6581 5997 2 704 530 283 34 40 chr4 15683461 15683477 -139946643 + L1M3 LINE L1 3797 3812 -2328 2 704 3183 58 5 0 chr4 15683477 15683871 -139946249 - MTA_Mm LTR MaLR 0 396 1 2 704 530 283 34 40 chr4 15683871 15684152 -139945968 + L1M3 LINE L1 3813 4093 -2047 2 704 2389 183 11 38 chr4 15684221 15684692 -139945428 - Lx4A LINE L1 -9 7049 6592 2 704 2587 69 17 9 chr4 15684692 15685042 -139945078 + L1_Mus1 LINE L1 6214 6566 -1 2 704 396 0 0 0 chr4 15685078 15685122 -139944998 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 704 9974 149 57 22 chr4 15685122 15686412 -139943708 - Lx4A LINE L1 -457 6601 5248 2 704 571 25 0 12 chr4 15686412 15686492 -139943628 - L1Md_T LINE L1 0 6582 6504 2 704 15825 120 73 10 chr4 15686492 15690512 -139939608 - Lx4A LINE L1 -592 5294 1374 2 704 3408 57 4 33 chr4 15690518 15690741 -139939379 - L1_Mus1 LINE L1 0 6567 6353 2 704 4585 105 25 47 chr4 15690741 15691509 -139938611 + RMER17A LTR ERVK 1 751 0 2 704 3408 57 4 33 chr4 15691509 15691743 -139938377 - L1_Mus1 LINE L1 -215 6352 6123 2 704 2055 49 0 0 chr4 15691743 15692008 -139938112 + L1_Mus1 LINE L1 5711 5975 -592 2 704 5241 71 28 7 chr4 15692061 15692859 -139937261 - Lx4A LINE L1 -2531 1383 562 2 704 1203 154 16 100 chr4 15692861 15693172 -139936948 - L1_Mur2 LINE L1 -1582 4295 4011 2 704 372 309 11 6 chr4 15693181 15693357 -139936763 + L1MA6 LINE L1 4671 4847 -1296 2 704 2498 62 35 12 chr4 15693363 15693708 -139936412 - L1Md_F2 LINE L1 0 6582 6230 2 704 767 280 94 12 chr4 15693709 15694222 -139935898 + L1MA6 LINE L1 5156 5789 -508 2 704 378 0 0 0 chr4 15694222 15694264 -139935856 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 704 2073 210 28 26 chr4 15694277 15694737 -139935383 + RMER4A LTR ERVK 6 466 0 2 704 240 279 45 45 chr4 15694758 15694912 -139935208 + L1MA6 LINE L1 5776 5929 -371 2 704 423 0 0 0 chr4 15694946 15694993 -139935127 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 704 24 0 0 0 chr4 15695108 15695132 -139934988 + AT_rich Low_complexity Low_complexity 1 24 0 2 704 204 323 129 31 chr4 15695190 15695353 -139934767 + MIR SINE MIR 53 231 -31 2 704 408 144 33 17 chr4 15695716 15695836 -139934284 + (CAGAGA)n Simple_repeat Simple_repeat 1 122 0 2 704 1966 192 31 22 chr4 15698123 15698538 -139931582 + MTC LTR MaLR 1 419 -2 2 704 1175 34 0 13 chr4 15698703 15698852 -139931268 - B1_Mus1 SINE Alu 0 148 2 2 704 502 338 14 7 chr4 15699170 15699310 -139930810 + ID_B1 SINE B4 81 221 -3 2 704 1344 227 66 43 chr4 15700223 15700573 -139929547 + ORR1D1 LTR MaLR 10 367 -7 2 704 376 329 72 45 chr4 15702036 15702259 -139927861 + MIR SINE MIR 34 262 0 2 704 262 383 66 6 chr4 15702291 15702472 -139927648 - L2 LINE L2 -638 2781 2590 2 704 23 33 0 0 chr4 15703729 15703759 -139926361 + AT_rich Low_complexity Low_complexity 1 30 0 2 704 23 0 0 0 chr4 15704327 15704350 -139925770 + AT_rich Low_complexity Low_complexity 1 23 0 2 704 734 266 38 114 chr4 15704372 15704635 -139925485 + B4 SINE B4 2 244 -48 2 704 1036 294 53 9 chr4 15704639 15704958 -139925162 + Lx8 LINE L1 6990 7322 -151 2 704 843 272 57 14 chr4 15705027 15705310 -139924810 + RMER1C Other Other 642 936 -406 2 704 7706 64 4 2 chr4 15706128 15707505 -139922615 - L1_Mus1 LINE L1 0 6567 5185 2 704 943 65 0 0 chr4 15708171 15708294 -139921826 + B1_Mus2 SINE Alu 25 147 0 2 704 1303 88 0 44 chr4 15708453 15708656 -139921464 + B2_Mm2 SINE B2 2 195 0 2 704 215 150 25 0 chr4 15709307 15709347 -139920773 + A-rich Low_complexity Low_complexity 5 45 0 2 704 222 300 56 14 chr4 15710056 15710127 -139919993 - MIRm SINE MIR -8 268 195 3 704 646 271 37 52 chr4 15710658 15710849 -139919271 + B3A SINE B2 9 196 -2 3 704 3368 33 15 0 chr4 15711372 15711762 -139918358 - MTA_Mm LTR MaLR 0 396 1 3 704 267 277 30 30 chr4 15712369 15712436 -139917684 + PB1D10 SINE Alu 2 68 -49 3 704 253 291 18 0 chr4 15712462 15712517 -139917603 + tRNA-Ala-GCY_ tRNA tRNA 14 69 -6 3 704 261 62 60 30 chr4 15712522 15712589 -139917531 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 704 526 276 70 7 chr4 15712687 15712829 -139917291 + B3A SINE B2 2 152 -46 3 704 306 0 0 0 chr4 15712831 15712865 -139917255 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 704 687 12 0 0 chr4 15713545 15713625 -139916495 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 704 667 289 0 13 chr4 15713627 15713781 -139916339 - B3A SINE B2 -45 153 2 3 704 24 32 0 0 chr4 15713790 15713821 -139916299 + AT_rich Low_complexity Low_complexity 1 31 0 3 704 486 274 78 15 chr4 15714160 15714364 -139915756 + MER20 DNA MER1_type 3 219 0 3 704 26 82 0 0 chr4 15714568 15714629 -139915491 + AT_rich Low_complexity Low_complexity 1 61 0 3 704 269 283 21 42 chr4 15714709 15714805 -139915315 + (TATATG)n Simple_repeat Simple_repeat 4 97 0 3 704 1176 113 5 46 chr4 15715005 15715199 -139914921 - B2_Mm2 SINE B2 -8 187 2 3 704 468 0 0 0 chr4 15716588 15716640 -139913480 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 704 360 0 0 0 chr4 15716640 15716680 -139913440 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 704 200 86 0 28 chr4 15716706 15716742 -139913378 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 704 270 143 0 0 chr4 15716837 15716886 -139913234 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 704 453 249 81 46 chr4 15717634 15717807 -139912313 + B3A SINE B2 4 182 -16 3 704 1037 179 118 13 chr4 15718939 15719177 -139910943 - Lx5 LINE L1 -475 6575 6313 3 704 1545 248 98 18 chr4 15719216 15719656 -139910464 + Lx5 LINE L1 6576 7050 0 3 704 567 281 47 12 chr4 15719731 15719987 -139910133 + L1M5 LINE L1 4510 4774 -1372 3 704 394 317 108 17 chr4 15720138 15720369 -139909751 + L1M5 LINE L1 4944 5195 -951 3 704 396 0 0 0 chr4 15720478 15720522 -139909598 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 704 444 67 0 0 chr4 15720522 15720581 -139909539 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 704 553 181 158 128 chr4 15721280 15721483 -139908637 - B3 SINE B2 -5 211 3 3 704 21 36 0 0 chr4 15721523 15721551 -139908569 + AT_rich Low_complexity Low_complexity 1 28 0 3 704 274 325 0 13 chr4 15721699 15721777 -139908343 + PB1D7 SINE Alu 37 113 -7 3 704 226 233 70 0 chr4 15721987 15722073 -139908047 - Lx9 LINE L1 -37 7607 7516 3 704 268 328 38 56 chr4 15722430 15722593 -139907527 + L2c LINE L2 3194 3382 -5 3 704 17421 106 9 2 chr4 15724051 15726768 -139903352 + L1Md_F2 LINE L1 2850 5585 -298 3 704 8405 32 0 2 chr4 15726769 15727759 -139902361 + L1Md_F2 LINE L1 5587 6574 -8 3 704 6175 77 12 2 chr4 15727769 15728590 -139901530 + L1_Mus1 LINE L1 5739 6567 0 3 705 487 337 176 14 chr4 15729422 15729717 -139900403 + LTR78 LTR ERV1 960 1302 -2 3 705 2237 79 82 3 chr4 15730268 15730597 -139899523 + IAPEY2_LTR LTR ERVK 1 355 -2 3 705 251 279 42 59 chr4 15730848 15730966 -139899154 + RMER20B LTR ERVK 488 603 -24 3 705 495 48 0 0 chr4 15731241 15731303 -139898817 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 705 357 325 38 13 chr4 15733981 15734140 -139895980 + RSINE1 SINE B4 3 165 0 3 705 280 333 0 18 chr4 15734723 15734836 -139895284 + CT-rich Low_complexity Low_complexity 3 113 0 3 705 1111 60 7 0 chr4 15735482 15735633 -139894487 - L1_Mus1 LINE L1 -235 6332 6181 3 705 598 42 0 0 chr4 15735632 15735704 -139894416 + L1_Mus1 LINE L1 6333 6404 -163 3 705 651 268 39 4 chr4 15735720 15735952 -139894168 + L1M2 LINE L1 4571 4810 -1333 3 705 2405 229 35 47 chr4 15736292 15736911 -139893209 - Lx6 LINE L1 0 7460 6849 3 705 226 290 16 0 chr4 15737015 15737077 -139893043 + ID4_ SINE ID 16 78 -5 3 705 381 43 0 0 chr4 15737578 15737625 -139892495 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 705 2301 197 48 29 chr4 15737898 15738316 -139891804 + RMER1B Other Other 537 967 -99 3 705 3862 24 52 0 chr4 15738316 15738774 -139891346 - LTRIS_Mm LTR ERV1 0 482 1 3 705 2301 197 48 29 chr4 15738774 15738872 -139891248 + RMER1B Other Other 968 1063 -3 3 705 4542 21 2 0 chr4 15738894 15739451 -139890669 + L1Md_F2 LINE L1 5029 5586 -297 3 705 8081 50 1 2 chr4 15739451 15740448 -139889672 + L1Md_F2 LINE L1 5587 6582 0 3 705 234 0 0 0 chr4 15740457 15740483 -139889637 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 3 705 24 32 0 0 chr4 15740939 15740970 -139889150 + AT_rich Low_complexity Low_complexity 1 31 0 3 705 2476 159 179 88 chr4 15741065 15741698 -139888422 - RMER6C LTR ERVK 0 690 1 3 705 23 54 0 0 chr4 15741951 15741988 -139888132 + AT_rich Low_complexity Low_complexity 1 37 0 3 705 491 263 108 21 chr4 15743338 15743532 -139886588 - Lx8 LINE L1 0 7473 7263 3 705 241 279 29 0 chr4 15744970 15745038 -139885082 + B1_Mur2 SINE Alu 63 132 -17 3 705 250 369 0 120 chr4 15745077 15745194 -139884926 + PB1D7 SINE Alu 17 119 -1 3 705 4889 106 54 24 chr4 15745196 15746218 -139883902 + L1Md_F2 LINE L1 385 1441 -4442 3 705 3164 30 141 0 chr4 15746856 15747282 -139882838 + MT2_Mm LTR ERVL 1 486 -7 3 705 531 0 0 0 chr4 15748629 15748688 -139881432 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 705 30586 78 6 7 chr4 15748688 15752557 -139877563 + L1Md_F2 LINE L1 1433 5302 -581 3 705 4084 72 0 4 chr4 15752557 15753088 -139877032 + L1Md_F2 LINE L1 6054 6582 0 3 705 30586 65 16 3 chr4 15753088 15753787 -139876333 + L1Md_F2 LINE L1 5303 6002 -580 3 705 411 56 0 0 chr4 15753787 15753841 -139876279 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 3 705 2818 123 9 2 chr4 15753841 15754288 -139875832 - Lx3_Mus LINE L1 -20 6989 6540 3 705 8367 148 40 35 chr4 15754280 15754450 -139875670 - L1_Mur2 LINE L1 -561 5316 5188 3 705 1054 76 7 20 chr4 15754450 15754598 -139875522 - B1_Mus2 SINE Alu 0 147 2 3 705 8367 148 40 35 chr4 15754598 15756138 -139873982 - L1_Mur2 LINE L1 -690 5187 3597 3 705 1474 175 17 10 chr4 15756136 15756424 -139873696 + L1_Mur2 LINE L1 5357 5646 -231 3 705 483 63 0 0 chr4 15756547 15756610 -139873510 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 705 2039 208 0 0 chr4 15756611 15756976 -139873144 - MTC LTR MaLR -56 365 1 3 705 268 293 71 35 chr4 15756981 15757066 -139873054 - MTE-int LTR MaLR -711 869 782 3 705 342 0 0 0 chr4 15757534 15757572 -139872548 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3 705 1306 351 141 31 chr4 15757989 15758437 -139871683 - Charlie8 DNA MER1_type -524 1904 1439 3 705 612 27 0 0 chr4 15758437 15758511 -139871609 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 705 1306 351 141 31 chr4 15758511 15759096 -139871024 - Charlie8 DNA MER1_type -990 1438 760 3 705 769 89 16 0 chr4 15759096 15759220 -139870900 + (TA)n Simple_repeat Simple_repeat 2 127 0 3 705 1306 351 141 31 chr4 15759220 15759257 -139870863 - Charlie8 DNA MER1_type -1669 759 720 3 705 237 274 99 49 chr4 15759257 15759399 -139870721 + B1F SINE Alu 1 149 0 3 705 1306 351 141 31 chr4 15759399 15759764 -139870356 - Charlie8 DNA MER1_type -1709 719 308 3 705 486 0 0 0 chr4 15760701 15760755 -139869365 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 705 675 335 6 0 chr4 15760969 15761136 -139868984 + ID_B1 SINE B4 23 190 -34 3 705 265 225 22 0 chr4 15761151 15761240 -139868880 + GA-rich Low_complexity Low_complexity 2 92 0 3 705 1424 264 70 56 chr4 15761500 15761898 -139868222 + RMER5 LTR ERV1 1 413 -121 3 705 1151 82 0 0 chr4 15761898 15762045 -139868075 + B1_Mus1 SINE Alu 2 148 0 3 705 1424 264 70 56 chr4 15762045 15762164 -139867956 + RMER5 LTR ERV1 414 524 -10 3 705 637 122 37 0 chr4 15762298 15762405 -139867715 + Lx5 LINE L1 3457 3567 -2313 3 705 5905 193 83 83 chr4 15762409 15763073 -139867047 + Lx5 LINE L1 4262 4971 -2079 3 705 253 300 130 22 chr4 15763073 15763165 -139866955 + MT2B LTR ERVL 156 257 -344 3 705 592 219 9 0 chr4 15763094 15763208 -139866912 + B1_Mus2 SINE Alu 32 146 -1 3 705 5905 193 83 83 chr4 15763208 15764493 -139865627 + Lx5 LINE L1 4972 6349 -701 3 705 969 300 76 38 chr4 15764502 15765059 -139865061 + Lx5 LINE L1 6506 7456 -4 3 705 191 338 65 58 chr4 15765580 15765734 -139864386 - MIRc SINE MIR -112 156 2 3 705 302 183 14 0 chr4 15766168 15766239 -139863881 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 705 2907 99 9 0 chr4 15766688 15767110 -139863010 + Lx2A1 LINE L1 6583 7008 0 3 705 180 284 209 29 chr4 15767299 15767404 -139862716 + L3b LINE CR1 191 314 -168 3 705 6330 99 16 8 chr4 15769104 15770858 -139859262 + L1VL2 LINE L1 58 1826 -1789 3 705 301 291 35 0 chr4 15770988 15771074 -139859046 - PB1D10 SINE Alu -2 115 27 3 705 10485 41 6 14 chr4 15771116 15773203 -139856917 - L1Md_F3 LINE L1 0 6584 4514 3 705 351 65 0 0 chr4 15773577 15773623 -139856497 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 705 311 216 250 0 chr4 15774051 15774139 -139855981 + PB1D10 SINE Alu 3 112 -5 3 705 249 188 78 0 chr4 15774854 15774918 -139855202 + L1M2 LINE L1 2745 2813 -3330 3 705 258 105 0 0 chr4 15774962 15775000 -139855120 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 705 303 191 0 0 chr4 15775218 15775281 -139854839 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 705 417 386 48 96 chr4 15775827 15776262 -139853858 + L1MDa LINE L1 356 1040 -5593 3 705 271 279 0 0 chr4 15776322 15776390 -139853730 + MER63D DNA AcHobo 313 380 -681 3 705 357 62 0 0 chr4 15776577 15776625 -139853495 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 705 1146 212 40 74 chr4 15776859 15777185 -139852935 - RCHARR1 DNA MER1_type -76 898 584 3 705 2592 260 72 54 chr4 15777189 15778034 -139852086 + RMER13A LTR ERVK 1 860 0 3 705 1809 259 122 8 chr4 15778035 15778560 -139851560 - RCHARR1 DNA MER1_type -389 585 1 3 705 378 74 0 0 chr4 15779169 15779223 -139850897 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 705 255 152 0 0 chr4 15779232 15779278 -139850842 + GA-rich Low_complexity Low_complexity 3 48 0 3 705 532 270 72 14 chr4 15779283 15779422 -139850698 - B3 SINE B2 -64 152 6 3 705 1148 79 0 12 chr4 15780224 15780390 -139849730 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 3 705 30 59 0 0 chr4 15780470 15780521 -139849599 + AT_rich Low_complexity Low_complexity 1 51 0 3 705 35733 16 5 7 chr4 15780673 15785812 -139844308 + L1Md_A LINE L1 468 5586 -297 3 705 8645 24 0 0 chr4 15785812 15786807 -139843313 + L1Md_A LINE L1 5587 6581 -1 3 705 436 341 70 11 chr4 15787328 15787601 -139842519 + L1MCa LINE L1 27 315 -6193 4 705 286 241 11 11 chr4 15787604 15787692 -139842428 + L1M2 LINE L1 5472 5559 -732 4 705 3327 176 105 24 chr4 15787719 15788431 -139841689 + Lx3C LINE L1 6205 6974 -2 4 705 656 279 103 21 chr4 15788561 15788979 -139841141 + L1M3 LINE L1 4179 4630 -1510 4 705 34627 56 2 28 chr4 15789003 15794638 -139835482 + L1Md_A LINE L1 101 5586 -297 4 705 8434 35 0 0 chr4 15794638 15795633 -139834487 + L1Md_A LINE L1 5587 6581 -1 4 705 555 255 93 21 chr4 15795634 15795870 -139834250 + L1M3 LINE L1 4623 4875 -1265 4 705 2965 38 0 0 chr4 15795993 15796339 -139833781 + ORR1A0 LTR MaLR 1 346 0 4 705 311 250 0 0 chr4 15796347 15796415 -139833705 + B1_Mur2 SINE Alu 73 140 -9 4 705 309 239 25 42 chr4 15796382 15796604 -139833516 - RMER17D LTR ERVK -381 508 291 4 705 1060 77 0 7 chr4 15796604 15796748 -139833372 + B2_Mm2 SINE B2 3 145 -50 4 705 27 29 0 0 chr4 15796876 15796910 -139833210 + AT_rich Low_complexity Low_complexity 1 34 0 4 705 216 97 0 0 chr4 15796938 15796969 -139833151 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 705 186 390 74 47 chr4 15796991 15797139 -139832981 + MER5B DNA MER1_type 9 160 -18 4 705 208 295 154 0 chr4 15797480 15797558 -139832562 - L2c LINE L2 -328 3059 2970 4 705 660 282 44 5 chr4 15797606 15797809 -139832311 + B3 SINE B2 1 211 -5 4 705 254 289 0 42 chr4 15798066 15798185 -139831935 + L1MD LINE L1 5037 5150 -996 4 705 314 183 188 35 chr4 15798277 15798362 -139831758 + L1MC LINE L1 5286 5383 -763 4 705 217 180 20 0 chr4 15798438 15798502 -139831618 + (CAA)n Simple_repeat Simple_repeat 1 65 0 4 705 225 154 0 0 chr4 15798518 15798557 -139831563 + GA-rich Low_complexity Low_complexity 3 41 0 4 705 327 325 99 106 chr4 15798565 15798740 -139831380 + L1ME1 LINE L1 5373 5552 -627 4 705 1228 54 0 0 chr4 15798740 15798887 -139831233 + B1_Mm SINE Alu 1 147 0 4 705 327 325 99 106 chr4 15798887 15799014 -139831106 + L1ME1 LINE L1 5553 5673 -506 4 705 1279 194 111 34 chr4 15799221 15799408 -139830712 + Lx7 LINE L1 7123 7310 -386 4 705 221 0 35 0 chr4 15799408 15799437 -139830683 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 705 1279 194 111 34 chr4 15799437 15799628 -139830492 + Lx7 LINE L1 7311 7530 -166 4 705 696 107 0 0 chr4 15799631 15799734 -139830386 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 705 227 54 0 26 chr4 15799754 15799792 -139830328 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 4 705 463 143 50 10 chr4 15799796 15799895 -139830225 + Lx7 LINE L1 7594 7696 0 4 705 444 255 78 20 chr4 15799936 15800140 -139829980 + B3 SINE B2 1 216 0 4 705 479 281 27 109 chr4 15800149 15800517 -139829603 + L1ME1 LINE L1 5821 6158 -21 4 705 370 298 56 80 chr4 15800761 15801049 -139829071 - Lx9 LINE L1 -1075 6569 6289 4 705 2211 261 82 51 chr4 15801057 15801975 -139828145 + Lx9 LINE L1 6646 7591 -53 4 705 416 290 0 0 chr4 15802454 15802554 -139827566 + PB1D10 SINE Alu 10 109 -8 4 705 216 287 45 22 chr4 15802997 15803086 -139827034 + BC1_Mm scRNA scRNA 1 91 -61 4 705 323 338 77 51 chr4 15803633 15803789 -139826331 - RSINE1 SINE B4 -4 161 2 4 705 276 162 137 2 chr4 15803857 15803944 -139826176 - Kanga1d DNA Tc2 -504 105 5 4 705 723 216 0 13 chr4 15804097 15804247 -139825873 + B1_Mur3 SINE Alu 1 148 -1 4 705 472 331 32 19 chr4 15804377 15804534 -139825586 + B3A SINE B2 24 182 -16 4 705 23 68 0 0 chr4 15804583 15804627 -139825493 + AT_rich Low_complexity Low_complexity 1 44 0 4 705 229 300 109 10 chr4 15804842 15804943 -139825177 + L2c LINE L2 3277 3387 0 4 705 3410 25 5 0 chr4 15805608 15806002 -139824118 - MTA_Mm LTR MaLR 0 396 1 4 705 21 0 0 0 chr4 15806702 15806723 -139823397 + AT_rich Low_complexity Low_complexity 1 21 0 4 705 250 295 113 9 chr4 15807023 15807129 -139822991 + L2a LINE L2 3309 3425 -1 4 705 21 0 0 0 chr4 15808453 15808474 -139821646 + GC_rich Low_complexity Low_complexity 1 21 0 4 705 450 0 0 0 chr4 15809327 15809377 -139820743 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 705 21 57 0 0 chr4 15809916 15809951 -139820169 + AT_rich Low_complexity Low_complexity 1 35 0 4 705 423 0 0 0 chr4 15810244 15810291 -139819829 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 705 473 47 16 0 chr4 15810291 15810355 -139819765 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 705 24 0 0 0 chr4 15811618 15811642 -139818478 + AT_rich Low_complexity Low_complexity 1 24 0 4 705 30 0 0 0 chr4 15812248 15812278 -139817842 + AT_rich Low_complexity Low_complexity 1 30 0 4 705 21 0 0 0 chr4 15815059 15815080 -139815040 + AT_rich Low_complexity Low_complexity 1 21 0 4 705 28 48 0 0 chr4 15816146 15816188 -139813932 + AT_rich Low_complexity Low_complexity 1 42 0 4 705 370 328 101 101 chr4 15816669 15816985 -139813135 - LTR16A LTR ERVL -46 405 90 4 705 21 82 0 0 chr4 15817125 15817174 -139812946 + AT_rich Low_complexity Low_complexity 1 49 0 4 705 517 235 17 0 chr4 15818154 15818269 -139811851 + PB1D9 SINE Alu 4 120 0 4 705 322 179 12 23 chr4 15818269 15818355 -139811765 + GA-rich Low_complexity Low_complexity 3 87 0 4 705 883 45 0 0 chr4 15820145 15820255 -139809865 - B2_Mm2 SINE B2 -83 112 3 4 705 2269 245 100 112 chr4 15820294 15820366 -139809754 + RCHARR1 DNA MER1_type 3 97 -877 4 705 276 30 0 0 chr4 15820366 15820399 -139809721 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 705 2269 245 100 112 chr4 15820399 15820485 -139809635 + RCHARR1 DNA MER1_type 98 205 -769 4 705 1097 126 10 10 chr4 15820485 15820685 -139809435 + Lx LINE L1 6453 6652 -2 4 705 2269 245 100 112 chr4 15820685 15821509 -139808611 + RCHARR1 DNA MER1_type 206 972 -2 4 705 239 363 29 0 chr4 15821684 15821786 -139808334 - MIR SINE MIR -58 150 46 4 705 288 0 0 0 chr4 15822906 15822938 -139807182 + (A)n Simple_repeat Simple_repeat 1 32 0 4 705 405 318 52 26 chr4 15823848 15824003 -139806117 + RSINE1 SINE B4 3 161 -4 4 705 184 387 80 11 chr4 15824054 15824242 -139805878 - MIR SINE MIR -22 240 40 4 705 26 0 0 0 chr4 15826487 15826513 -139803607 + AT_rich Low_complexity Low_complexity 1 26 0 4 705 21 0 0 0 chr4 15827240 15827261 -139802859 + AT_rich Low_complexity Low_complexity 1 21 0 4 705 29 60 0 0 chr4 15827734 15827784 -139802336 + AT_rich Low_complexity Low_complexity 1 50 0 4 705 1494 277 117 4 chr4 15828328 15828388 -139801732 - L1MB1 LINE L1 -28 6161 6086 4 705 468 0 0 0 chr4 15828388 15828440 -139801680 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 705 1494 276 110 38 chr4 15828440 15829425 -139800695 - L1MB1 LINE L1 -104 6085 5036 4 705 579 231 85 0 chr4 15829425 15829555 -139800565 - B1_Mur1 SINE Alu -8 141 1 4 705 616 274 100 95 chr4 15829555 15829761 -139800359 - L1MB1 LINE L1 -1105 5035 4815 4 705 408 55 0 0 chr4 15829761 15829816 -139800304 + (CTATT)n Simple_repeat Simple_repeat 2 56 0 4 705 616 274 100 95 chr4 15829816 15829912 -139800208 - L1MB1 LINE L1 -1326 4814 4718 4 705 403 285 66 0 chr4 15830025 15830319 -139799801 - L1MB1 LINE L1 -1438 4705 4391 4 705 233 276 85 17 chr4 15830346 15830464 -139799656 - L1MB1 LINE L1 -1807 4333 4208 4 705 185 393 24 41 chr4 15831098 15831268 -139798852 + MIRc SINE MIR 87 253 -15 4 705 481 250 0 0 chr4 15833905 15834005 -139796115 - PB1D10 SINE Alu -7 110 11 4 705 293 293 0 13 chr4 15833939 15834015 -139796105 - ID_B1 SINE B4 -67 157 83 4 705 289 196 0 0 chr4 15834702 15834753 -139795367 + L1M5 LINE L1 5557 5607 -566 4 705 594 268 29 12 chr4 15836218 15836388 -139793732 + B4 SINE B4 108 280 -12 4 705 252 185 0 0 chr4 15836427 15836481 -139793639 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 705 30 0 0 0 chr4 15836514 15836544 -139793576 + AT_rich Low_complexity Low_complexity 1 30 0 4 705 617 255 156 10 chr4 15836722 15837028 -139793092 + L1MA7 LINE L1 5911 6246 -45 4 705 823 162 15 0 chr4 15837035 15837171 -139792949 + B1_Mur4 SINE Alu 8 145 -5 4 705 509 164 277 25 chr4 15837408 15837527 -139792593 + B1_Mur2 SINE Alu 1 149 0 4 705 457 287 69 23 chr4 15837608 15837783 -139792337 + ID_B1 SINE B4 1 183 -41 4 705 996 253 84 22 chr4 15838178 15838453 -139791667 - B4A SINE B4 0 292 1 4 705 404 240 0 8 chr4 15838595 15838717 -139791403 + C-rich Low_complexity Low_complexity 4 124 0 4 705 1380 203 40 74 chr4 15838881 15839258 -139790862 - Lx4B LINE L1 0 7058 6695 4 705 270 220 0 48 chr4 15839330 15839435 -139790685 + A-rich Low_complexity Low_complexity 1 100 0 4 705 2476 35 0 0 chr4 15839543 15839859 -139790261 - IAPEY3_LTR LTR ERVK -16 316 1 4 705 5830 59 56 0 chr4 15839859 15840591 -139789529 - IAPEY3-int LTR ERVK 0 7680 6908 4 705 24038 91 19 6 chr4 15840591 15843838 -139786282 - IAPEY3-int LTR ERVK -4393 3287 1 4 705 2376 77 68 0 chr4 15843838 15844149 -139785971 - IAPEY3_LTR LTR ERVK 0 332 1 4 705 508 216 137 46 chr4 15844162 15844337 -139785783 + B3A SINE B2 1 191 -7 4 705 21 71 0 0 chr4 15844887 15844929 -139785191 + AT_rich Low_complexity Low_complexity 1 42 0 4 705 243 348 41 55 chr4 15845653 15845669 -139784451 - RSINE1 SINE B4 -2 163 147 4 705 255 61 0 0 chr4 15845669 15845702 -139784418 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 705 243 348 41 55 chr4 15845702 15845831 -139784289 - RSINE1 SINE B4 -19 146 21 4 705 219 233 95 14 chr4 15845999 15846073 -139784047 + ID2 SINE ID 2 81 -2 4 705 1209 48 0 0 chr4 15846530 15846676 -139783444 + B1_Mus2 SINE Alu 2 147 0 4 705 794 249 15 25 chr4 15848004 15848206 -139781914 + B3 SINE B2 1 200 -16 4 705 375 23 0 0 chr4 15848217 15848261 -139781859 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 705 276 100 0 0 chr4 15848451 15848491 -139781629 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 705 27 0 0 0 chr4 15848535 15848562 -139781558 + AT_rich Low_complexity Low_complexity 1 27 0 4 705 949 205 35 5 chr4 15849131 15849332 -139780788 + B3 SINE B2 2 208 -8 4 705 488 279 10 0 chr4 15850032 15850136 -139779984 + B1_Mur1 SINE Alu 2 106 -43 4 705 460 163 258 26 chr4 15850674 15850825 -139779295 + B2_Mm2 SINE B2 1 186 -9 4 705 689 187 0 61 chr4 15850835 15850983 -139779137 + B1_Mur3 SINE Alu 1 139 -10 4 705 1643 139 12 69 chr4 15851708 15851821 -139778299 + ORR1B1 LTR MaLR 41 150 -244 4 705 297 0 0 0 chr4 15851821 15851854 -139778266 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 705 1643 139 12 69 chr4 15851854 15852072 -139778048 + ORR1B1 LTR MaLR 151 352 -42 4 705 330 120 0 0 chr4 15852119 15852169 -139777951 + ORR1B1 LTR MaLR 337 386 -8 4 705 482 204 9 46 chr4 15853028 15853136 -139776984 + RSINE1 SINE B4 22 125 -40 4 705 309 51 0 0 chr4 15853155 15853194 -139776926 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 705 363 240 104 0 chr4 15854173 15854269 -139775851 + PB1D10 SINE Alu 6 111 -6 4 705 1061 99 6 0 chr4 15855325 15855486 -139774634 + (GAAA)n Simple_repeat Simple_repeat 1 162 0 5 705 2109 126 105 0 chr4 15855689 15856071 -139774049 + BGLII_B LTR ERVK 20 441 0 5 705 351 0 0 0 chr4 15856078 15856117 -139774003 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 5 705 410 242 39 39 chr4 15857270 15857399 -139772721 + B1F SINE Alu 10 138 -11 5 705 1933 151 189 14 chr4 15858524 15859057 -139771063 + RMER6C LTR ERVK 1 690 0 5 705 383 317 35 28 chr4 15859130 15859273 -139770847 - ID_B1 SINE B4 0 224 81 5 705 21 0 0 0 chr4 15859468 15859489 -139770631 + AT_rich Low_complexity Low_complexity 1 21 0 5 706 189 107 0 0 chr4 15860244 15860272 -139769848 + (A)n Simple_repeat Simple_repeat 1 28 0 5 706 259 321 91 106 chr4 15860381 15860646 -139769474 + MIR SINE MIR 3 268 0 5 706 868 92 75 15 chr4 15860694 15860827 -139769293 + B1_Mus1 SINE Alu 5 145 -3 5 706 194 62 31 0 chr4 15860828 15860860 -139769260 + (TAA)n Simple_repeat Simple_repeat 3 35 0 5 706 350 222 0 92 chr4 15860860 15860969 -139769151 + ID_B1 SINE B4 116 214 -10 5 706 813 142 0 60 chr4 15861030 15861167 -139768953 + B1_Mur3 SINE Alu 9 137 -12 5 706 180 0 0 0 chr4 15861167 15861187 -139768933 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 706 813 142 0 60 chr4 15861187 15861199 -139768921 + B1_Mur3 SINE Alu 138 149 0 5 706 362 267 95 0 chr4 15861208 15861313 -139768807 + PB1D10 SINE Alu 1 115 -2 5 706 572 175 57 21 chr4 15861357 15861573 -139768547 + ORR1B2 LTR MaLR 1 367 0 5 706 444 333 89 10 chr4 15862335 15862538 -139767582 + ID_B1 SINE B4 6 224 0 5 706 24 67 0 0 chr4 15862834 15862879 -139767241 + AT_rich Low_complexity Low_complexity 1 45 0 5 706 215 192 13 0 chr4 15864903 15864981 -139765139 + CT-rich Low_complexity Low_complexity 2 80 0 5 706 567 195 0 0 chr4 15864993 15865121 -139764999 + GA-rich Low_complexity Low_complexity 1 128 0 5 706 868 275 20 0 chr4 15865129 15865329 -139764791 - B4 SINE B4 -37 255 52 5 706 288 300 10 10 chr4 15865558 15865659 -139764461 + L1M5 LINE L1 5554 5654 -470 5 706 373 244 12 0 chr4 15865712 15865794 -139764326 + ID4 SINE ID 1 83 0 5 706 303 270 22 11 chr4 15865798 15865888 -139764232 + L1M3 LINE L1 4585 4675 -1465 5 706 391 362 58 11 chr4 15867561 15867751 -139762369 - L2a LINE L2 -14 3412 3214 5 706 271 323 21 10 chr4 15868460 15868557 -139761563 + PB1D9 SINE Alu 16 113 -7 5 706 803 264 14 9 chr4 15868570 15868784 -139761336 + B3 SINE B2 2 216 0 5 706 592 287 14 41 chr4 15869020 15869083 -139761037 - B3 SINE B2 -3 213 151 5 706 1712 144 167 9 chr4 15869083 15869413 -139760707 + ORR1C2 LTR MaLR 3 384 0 5 706 592 287 14 41 chr4 15869413 15869567 -139760553 - B3 SINE B2 -66 150 2 5 706 183 273 36 0 chr4 15869809 15869864 -139760256 - L2b LINE L2 -2 3373 3317 5 706 515 254 79 0 chr4 15870636 15870762 -139759358 - B1_Mur2 SINE Alu -13 136 1 5 706 22 0 0 0 chr4 15870809 15870831 -139759289 + AT_rich Low_complexity Low_complexity 1 22 0 5 706 1081 93 78 24 chr4 15873038 15873204 -139756916 - B2_Mm2 SINE B2 -19 176 2 5 706 311 298 69 17 chr4 15873346 15873462 -139756658 + RSINE1 SINE B4 25 146 -19 5 706 812 275 100 13 chr4 15873489 15873798 -139756322 - MTE2a LTR MaLR -31 348 13 5 706 745 261 191 4 chr4 15873811 15874073 -139756047 - MTE2a-int LTR MaLR -1 1579 1269 5 706 756 261 54 101 chr4 15874068 15874455 -139755665 - RMER10A LTR ERVL -13 429 61 5 706 555 195 0 0 chr4 15874492 15874605 -139755515 + CT-rich Low_complexity Low_complexity 1 113 0 5 706 954 279 123 43 chr4 15874674 15875357 -139754763 - MTE2a-int LTR MaLR -703 877 4 5 706 578 269 86 5 chr4 15875686 15875873 -139754247 + B3 SINE B2 6 207 -9 5 706 500 286 22 27 chr4 15876261 15876444 -139753676 + RMER5 LTR ERV1 218 399 -135 5 706 1666 196 178 21 chr4 15877117 15877550 -139752570 + RMER20B LTR ERVK 22 522 -105 5 706 1069 241 108 15 chr4 15877650 15877983 -139752137 - MTD LTR MaLR -46 373 10 5 706 2059 178 66 148 chr4 15878377 15878610 -139751510 + RLTR12B LTR ERVK 1 165 -363 5 706 1215 61 0 0 chr4 15878610 15878758 -139751362 - B1_Mus1 SINE Alu 0 148 1 5 706 2059 178 66 148 chr4 15878758 15879099 -139751021 + RLTR12B LTR ERVK 166 528 0 5 706 329 229 38 6 chr4 15879603 15879761 -139750359 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 706 1113 191 67 79 chr4 15879781 15880090 -139750030 + MT2B LTR ERVL 92 558 -43 5 706 261 0 0 0 chr4 15880090 15880119 -139750001 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 706 1113 187 63 84 chr4 15880119 15880163 -139749957 + MT2B LTR ERVL 559 601 0 5 706 296 200 0 16 chr4 15880181 15880242 -139749878 - ORR1D1 LTR MaLR -124 250 191 5 706 4107 133 58 5 chr4 15880243 15880887 -139749233 - RLTR33 LTR ERVK 0 678 1 5 706 602 191 34 28 chr4 15881080 15881254 -139748866 - ORR1D1 LTR MaLR -181 178 3 5 706 288 0 0 0 chr4 15881279 15881311 -139748809 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 706 1001 62 11 43 chr4 15881329 15881514 -139748606 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 706 917 128 0 43 chr4 15881539 15881727 -139748393 + CT-rich Low_complexity Low_complexity 1 180 0 5 706 812 197 14 0 chr4 15881727 15881874 -139748246 - B1_Mur2 SINE Alu 0 149 1 5 706 614 257 69 10 chr4 15882221 15882425 -139747695 + RMER5 LTR ERV1 41 256 -278 5 706 378 234 36 60 chr4 15882430 15882598 -139747522 - RLTR43A LTR ERVK 0 364 201 5 706 497 313 60 32 chr4 15882789 15883007 -139747113 + RMER5 LTR ERV1 292 515 -19 5 706 920 145 28 0 chr4 15883542 15883687 -139746433 + B1_Mur1 SINE Alu 1 149 0 5 706 287 260 113 8 chr4 15883841 15883965 -139746155 + MER2 DNA MER2_type 91 227 -118 5 706 642 183 26 0 chr4 15884113 15884228 -139745892 - PB1D9 SINE Alu 0 120 3 5 706 1378 73 22 6 chr4 15884314 15884493 -139745627 + B2_Mm2 SINE B2 4 185 -10 5 706 1225 63 85 11 chr4 15884495 15884672 -139745448 + B2_Mm2 SINE B2 1 190 -5 5 706 446 165 106 0 chr4 15885929 15886043 -139744077 + ID_B1 SINE B4 88 210 -14 5 706 371 257 35 44 chr4 15886249 15886363 -139743757 + PB1D7 SINE Alu 1 113 -7 5 706 2196 170 99 20 chr4 15886558 15887003 -139743117 - RMER1B Other Other -1 1065 586 5 706 1555 183 186 14 chr4 15887000 15887344 -139742776 - RMER1B Other Other -662 404 2 5 706 1474 68 11 0 chr4 15887652 15887842 -139742278 + B2_Mm2 SINE B2 2 193 -2 5 706 252 167 0 0 chr4 15887857 15887899 -139742221 + B3 SINE B2 26 67 -149 5 706 300 193 54 98 chr4 15887913 15888005 -139742115 + B3 SINE B2 129 216 0 5 706 461 153 81 10 chr4 15888042 15888141 -139741979 - PB1D9 SINE Alu 0 120 15 5 706 462 248 97 9 chr4 15888379 15888493 -139741627 + B2_Mm2 SINE B2 1 124 -71 5 706 1091 263 77 54 chr4 15888530 15889162 -139740958 + RLTR18B LTR ERVK 8 504 -8 5 706 288 0 0 0 chr4 15889162 15889194 -139740926 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 706 22 0 0 0 chr4 15889272 15889294 -139740826 + AT_rich Low_complexity Low_complexity 1 22 0 5 706 366 23 0 0 chr4 15889381 15889424 -139740696 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 706 1031 158 20 35 chr4 15889620 15889817 -139740303 - B2_Mm2 SINE B2 -1 194 1 5 706 388 291 175 27 chr4 15892630 15892927 -139737193 - L1MEg LINE L1 -4180 1904 1564 5 706 45 69 0 0 chr4 15892948 15893035 -139737085 + AT_rich Low_complexity Low_complexity 1 87 0 5 706 403 259 71 0 chr4 15893693 15893805 -139736315 - RSINE1 SINE B4 -45 120 1 5 706 713 250 45 10 chr4 15893821 15894019 -139736101 - ID_B1 SINE B4 -17 207 3 5 706 475 246 90 24 chr4 15894123 15894140 -139735980 - ID_B1 SINE B4 -1 223 170 5 706 746 143 54 0 chr4 15894140 15894252 -139735868 - B1_Mur1 SINE Alu -31 118 1 5 706 475 246 90 24 chr4 15894252 15894286 -139735834 - ID_B1 SINE B4 -1 169 49 5 706 222 246 105 0 chr4 15894868 15894925 -139735195 + ID_B1 SINE B4 79 141 -83 5 706 336 253 198 0 chr4 15894876 15894967 -139735153 + PB1D10 SINE Alu 6 114 -3 5 706 295 319 107 34 chr4 15895084 15895233 -139734887 + B3 SINE B2 34 193 -23 5 706 572 280 65 0 chr4 15895692 15895860 -139734260 + LTR40c LTR ERVL 1 179 -286 5 706 261 0 0 0 chr4 15896188 15896217 -139733903 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 706 226 296 64 204 chr4 15896220 15896377 -139733743 - B1F2 SINE Alu -14 135 1 5 706 207 88 0 0 chr4 15896886 15896920 -139733200 + (T)n Simple_repeat Simple_repeat 1 34 0 5 706 813 237 42 21 chr4 15897140 15897330 -139732790 - B3 SINE B2 -16 200 7 5 706 644 213 80 14 chr4 15898274 15898412 -139731708 - B1_Mur2 SINE Alu 0 149 3 5 706 190 196 54 0 chr4 15898551 15898643 -139731477 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 706 302 134 232 29 chr4 15898721 15898790 -139731330 - ID_B1 SINE B4 0 224 142 5 706 432 181 0 0 chr4 15899049 15899132 -139730988 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 706 367 292 62 10 chr4 15899709 15899806 -139730314 + B1F SINE Alu 48 149 0 5 706 273 240 122 96 chr4 15899888 15899944 -139730176 + MER2 DNA MER2_type 189 257 -88 5 706 1309 52 56 17 chr4 15899944 15900122 -139729998 - B2_Mm2 SINE B2 -9 186 2 5 706 273 240 122 96 chr4 15900122 15900180 -139729940 + MER2 DNA MER2_type 258 306 -39 5 706 915 180 215 7 chr4 15900295 15900398 -139729722 - Lx9 LINE L1 -8 7636 7524 5 706 477 0 0 0 chr4 15900398 15900451 -139729669 + (TGG)n Simple_repeat Simple_repeat 1 53 0 5 706 915 180 215 7 chr4 15900451 15900649 -139729471 - Lx9 LINE L1 -121 7523 7272 5 706 2893 153 27 22 chr4 15900649 15901205 -139728915 - RLTR31_Mm LTR ERVK 0 561 3 5 706 2603 210 116 85 chr4 15901209 15902025 -139728095 - MYSERV16_I-int LTR ERVK -2 2324 1549 5 706 1166 74 0 0 chr4 15902025 15902173 -139727947 - B1_Mus1 SINE Alu 0 148 1 5 706 2603 181 81 100 chr4 15902173 15902603 -139727517 - MYSERV16_I-int LTR ERVK -778 1548 1101 5 706 425 103 15 0 chr4 15903454 15903522 -139726598 + (TCCCC)n Simple_repeat Simple_repeat 3 71 0 5 706 201 39 0 0 chr4 15903522 15903548 -139726572 + (T)n Simple_repeat Simple_repeat 1 26 0 5 706 684 214 160 26 chr4 15903551 15903863 -139726257 - Lx9 LINE L1 -1 7643 7290 5 706 305 304 39 10 chr4 15904090 15904193 -139725927 + Tigger7 DNA MER2_type 39 144 -2347 5 706 866 138 249 0 chr4 15904205 15904386 -139725734 - URR1A DNA MER1_type 0 226 1 6 706 304 390 43 0 chr4 15904386 15904522 -139725598 + Tigger7 DNA MER2_type 158 299 -2192 5 706 899 247 118 16 chr4 15904530 15904843 -139725277 + Tigger7 DNA MER2_type 2132 2476 -15 5 706 370 281 38 30 chr4 15904904 15905036 -139725084 - RLTR14 LTR ERV1 -24 358 226 6 706 202 61 0 57 chr4 15905556 15905574 -139724546 + (T)n Simple_repeat Simple_repeat 1 18 0 6 706 1070 116 0 0 chr4 15905574 15905721 -139724399 - B1_Mus1 SINE Alu 0 148 2 6 706 202 61 0 57 chr4 15905721 15905737 -139724383 + (T)n Simple_repeat Simple_repeat 1 15 0 6 706 22 35 0 0 chr4 15905953 15905982 -139724138 + AT_rich Low_complexity Low_complexity 1 29 0 6 706 360 0 0 0 chr4 15906706 15906746 -139723374 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 706 234 0 0 0 chr4 15906746 15906771 -139723349 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 706 466 246 62 54 chr4 15906771 15906856 -139723264 - RSINE1 SINE B4 -32 133 53 6 706 2154 171 10 22 chr4 15906856 15907268 -139722852 - MTB_Mm LTR MaLR 0 407 1 6 706 466 246 62 54 chr4 15907268 15907311 -139722809 - RSINE1 SINE B4 -113 52 4 6 706 342 0 0 0 chr4 15907354 15907392 -139722728 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 706 1130 56 7 0 chr4 15907392 15907535 -139722585 - B1_Mus2 SINE Alu -3 144 1 6 706 482 277 9 0 chr4 15908915 15909027 -139721093 - ID_B1 SINE B4 -8 216 104 6 706 255 203 0 30 chr4 15909153 15909219 -139720901 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 6 706 2227 110 28 0 chr4 15909371 15909689 -139720431 - ORR1A2 LTR MaLR 0 327 1 6 706 557 216 34 17 chr4 15910478 15910596 -139719524 + B1_Mur1 SINE Alu 29 148 -1 6 706 644 214 63 14 chr4 15911644 15911786 -139718334 + B1_Mur1 SINE Alu 1 149 0 6 706 3683 250 96 52 chr4 15911858 15912998 -139717122 - MMAR1 DNA Mariner -12 1274 73 6 706 1188 61 0 0 chr4 15912998 15913146 -139716974 + B1_Mus1 SINE Alu 1 148 0 6 706 3683 250 96 52 chr4 15913146 15913199 -139716921 - MMAR1 DNA Mariner -1214 72 28 6 706 623 273 0 8 chr4 15913973 15914102 -139716018 - RSINE1 SINE B4 -36 129 2 6 706 298 211 0 0 chr4 15914670 15914732 -139715388 - Lx9 LINE L1 -1009 6635 6583 6 706 844 55 0 9 chr4 15914743 15914852 -139715268 + B1_Mus1 SINE Alu 28 135 -13 6 706 852 254 30 0 chr4 15914852 15915053 -139715067 - Lx9 LINE L1 -1102 6542 6336 6 706 232 290 129 0 chr4 15915109 15915233 -139714887 - ID_B1 SINE B4 -69 155 16 6 706 693 291 0 13 chr4 15915314 15915467 -139714653 - RSINE1 SINE B4 -4 161 11 6 706 447 227 66 25 chr4 15915469 15915591 -139714529 - B1F1 SINE Alu -1 148 22 6 706 1064 68 0 0 chr4 15915705 15915837 -139714283 + B1_Mus1 SINE Alu 4 135 -13 6 706 254 26 53 0 chr4 15915837 15915875 -139714245 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 706 21 0 0 0 chr4 15915875 15915896 -139714224 + AT_rich Low_complexity Low_complexity 1 21 0 6 706 538 292 143 73 chr4 15916337 15916610 -139713510 - B4A SINE B4 0 292 1 6 706 1894 96 3 4 chr4 15916617 15916916 -139713204 - MTB_Mm LTR MaLR -96 304 1 6 706 348 280 141 22 chr4 15917897 15918032 -139712088 - RSINE1 SINE B4 0 165 15 6 706 22 0 0 0 chr4 15918833 15918855 -139711265 + AT_rich Low_complexity Low_complexity 1 22 0 6 706 286 355 48 29 chr4 15919000 15919041 -139711079 - B3 SINE B2 -6 210 1 6 706 762 242 18 24 chr4 15919041 15919206 -139710914 - RSINE1 SINE B4 0 165 2 6 706 576 65 0 0 chr4 15919917 15919994 -139710126 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 6 706 279 122 0 0 chr4 15919995 15920044 -139710076 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 706 878 166 21 27 chr4 15920061 15920247 -139709873 - B2_Mm2 SINE B2 -9 186 2 6 706 428 169 51 13 chr4 15921086 15921164 -139708956 + ID SINE ID 2 82 -142 6 706 257 281 112 37 chr4 15921089 15921196 -139708924 - B3A SINE B2 -82 116 2 6 706 1944 168 87 16 chr4 15921612 15921993 -139708127 + RLTR19 LTR ERVK 92 499 0 6 706 252 191 44 0 chr4 15922011 15922079 -139708041 - L1M4 LINE L1 -2685 3461 3391 6 706 1047 227 119 41 chr4 15922769 15923114 -139707006 + ORR1D1 LTR MaLR 3 374 0 6 706 180 0 0 0 chr4 15924026 15924046 -139706074 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 6 706 180 329 27 54 chr4 15925868 15925942 -139704178 + L2 LINE L2 86 157 -3262 6 706 21 0 0 0 chr4 15926262 15926283 -139703837 + AT_rich Low_complexity Low_complexity 1 21 0 6 706 410 309 105 29 chr4 15926287 15926729 -139703391 + L1MA5 LINE L1 5448 5936 -364 6 706 240 130 0 0 chr4 15927034 15927080 -139703040 + (A)n Simple_repeat Simple_repeat 1 46 0 6 706 609 299 28 22 chr4 15927218 15927396 -139702724 - B3 SINE B2 -7 209 31 6 706 852 137 23 0 chr4 15927398 15927529 -139702591 + B1_Mur4 SINE Alu 6 139 -11 6 706 302 0 26 0 chr4 15927529 15927567 -139702553 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 706 630 0 0 0 chr4 15927570 15927640 -139702480 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 6 706 1013 46 8 0 chr4 15927642 15927773 -139702347 + (GAGAA)n Simple_repeat Simple_repeat 4 135 0 6 706 402 190 360 19 chr4 15927820 15927981 -139702139 + B3 SINE B2 1 216 0 6 706 275 211 0 66 chr4 15927988 15928049 -139702071 - B1_Mus1 SINE Alu -81 67 11 6 706 687 210 33 59 chr4 15928483 15928635 -139701485 + B1_Mur2 SINE Alu 2 149 0 6 706 266 47 0 44 chr4 15928669 15928714 -139701406 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 6 706 22 0 0 0 chr4 15928826 15928848 -139701272 + AT_rich Low_complexity Low_complexity 1 22 0 6 706 409 353 24 78 chr4 15930380 15930586 -139699534 + MER77 LTR ERVL 1 195 -412 6 706 244 240 26 13 chr4 15930604 15930680 -139699440 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 706 638 324 60 0 chr4 15930689 15930871 -139699249 + ID_B1 SINE B4 1 193 -31 6 706 286 174 9 0 chr4 15930889 15930945 -139699175 + B1_Mur3 SINE Alu 69 127 -20 6 706 216 0 0 0 chr4 15930947 15930971 -139699149 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 706 1465 192 67 43 chr4 15931128 15931499 -139698621 + ORR1C2 LTR MaLR 1 380 -4 6 706 906 196 30 15 chr4 15931618 15931815 -139698305 + B3 SINE B2 2 201 -15 6 706 606 204 44 29 chr4 15932079 15932215 -139697905 + B1_Mm SINE Alu 8 145 -2 6 706 308 333 57 57 chr4 15932249 15932271 -139697849 + B4 SINE B4 65 151 -141 6 706 348 273 19 75 chr4 15932271 15932378 -139697742 + MT2B LTR ERVL 157 257 -344 6 706 758 203 14 21 chr4 15932285 15932426 -139697694 + B1_Mm SINE Alu 8 147 0 6 706 308 333 57 57 chr4 15932378 15932389 -139697731 + B4 SINE B4 152 204 -88 6 706 587 298 74 19 chr4 15933007 15933277 -139696843 + B4 SINE B4 2 286 -6 6 706 551 322 34 0 chr4 15933887 15934036 -139696084 + RSINE1 SINE B4 12 165 0 6 706 278 210 51 101 chr4 15934100 15934238 -139695882 + L1MC LINE L1 3888 4018 -2128 6 706 541 284 80 14 chr4 15934412 15934698 -139695422 + L1MC LINE L1 4309 4613 -1533 6 706 567 216 58 0 chr4 15935299 15935438 -139694682 - L1MA5 LINE L1 -8 6292 6146 6 706 1338 97 38 0 chr4 15935533 15935719 -139694401 + B2_Mm2 SINE B2 1 193 -2 6 706 410 226 60 0 chr4 15936094 15936178 -139693942 + B4 SINE B4 2 90 -202 6 706 404 207 4 80 chr4 15936192 15936290 -139693830 + B4 SINE B4 145 238 -54 6 706 820 177 0 26 chr4 15936451 15936602 -139693518 + B1_Mus2 SINE Alu 1 147 0 6 706 1632 224 85 65 chr4 15937047 15937244 -139692876 + MT2A LTR ERVL 77 274 -259 6 706 1305 90 17 0 chr4 15937244 15937421 -139692699 + B2_Mm2 SINE B2 3 182 -13 6 706 195 42 0 0 chr4 15937421 15937445 -139692675 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 706 1632 224 85 65 chr4 15937445 15937694 -139692426 + MT2A LTR ERVL 275 532 -1 6 706 186 43 0 0 chr4 15937965 15937988 -139692132 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 706 328 243 211 26 chr4 15940062 15940214 -139689906 - Charlie4a DNA MER1_type -301 207 28 6 706 651 198 87 0 chr4 15941820 15941946 -139688174 + B1_Mur2 SINE Alu 13 149 0 6 706 2221 173 71 45 chr4 15942086 15942577 -139687543 + RMER5 LTR ERV1 22 525 -9 6 706 551 321 18 6 chr4 15942861 15943027 -139687093 - B3A SINE B2 -30 168 1 6 706 281 329 0 0 chr4 15943044 15943120 -139687000 + MLT1B LTR MaLR 307 382 -8 6 706 2207 37 0 0 chr4 15943488 15943732 -139686388 + L1_Mus1 LINE L1 6323 6566 -1 6 706 22 0 0 0 chr4 15944376 15944398 -139685722 + AT_rich Low_complexity Low_complexity 1 22 0 6 706 857 129 68 0 chr4 15944452 15944584 -139685536 + B1_Mm SINE Alu 1 141 -6 6 706 2135 145 71 48 chr4 15944624 15945147 -139684973 + RMER4B LTR ERVK 17 585 0 6 706 197 65 0 31 chr4 15945149 15945181 -139684939 + (GGA)n Simple_repeat Simple_repeat 3 33 0 6 706 1000 134 6 11 chr4 15945181 15945362 -139684758 + GA-rich Low_complexity Low_complexity 1 180 0 6 706 242 170 43 0 chr4 15945991 15946038 -139684082 + MER5B DNA MER1_type 4 52 -126 6 706 573 273 31 0 chr4 15946199 15946327 -139683793 - B1F2 SINE Alu -6 143 12 6 706 710 243 7 7 chr4 15946456 15946589 -139683531 - B1_Mus2 SINE Alu -2 145 13 6 706 282 116 0 0 chr4 15946589 15946632 -139683488 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 6 706 710 243 7 7 chr4 15946632 15946643 -139683477 - B1_Mus2 SINE Alu -135 12 2 6 706 207 85 0 60 chr4 15946647 15946697 -139683423 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 6 706 721 296 26 48 chr4 15946714 15946941 -139683179 - ID_B1 SINE B4 -2 222 1 6 706 700 234 14 21 chr4 15947271 15947411 -139682709 + B1_Mur3 SINE Alu 2 140 -9 6 706 296 237 0 0 chr4 15948024 15948083 -139682037 - PB1D10 SINE Alu -8 109 51 6 706 251 326 28 98 chr4 15948083 15948160 -139681960 - ID_B1 SINE B4 -1 213 91 6 706 5006 138 42 4 chr4 15948188 15949013 -139681107 + L1Md_F2 LINE L1 392 1248 -4635 7 706 2225 116 3 3 chr4 15949013 15949342 -139680778 + IAPEY2_LTR LTR ERVK 29 357 0 7 706 30641 83 6 2 chr4 15949342 15953520 -139676600 + L1Md_F2 LINE L1 1390 5585 -298 7 706 7509 86 18 4 chr4 15953521 15954491 -139675629 + L1Md_F2 LINE L1 5587 6569 -13 7 706 243 274 16 0 chr4 15954726 15954788 -139675332 - ID2 SINE ID -18 65 3 7 706 3570 86 14 35 chr4 15954883 15955368 -139674752 - MT2C_Mm LTR ERVL 0 475 1 7 706 253 256 0 47 chr4 15955427 15955513 -139674607 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 7 706 492 298 288 0 chr4 15955527 15955742 -139674378 - B4A SINE B4 -14 278 2 7 706 23 0 0 0 chr4 15955973 15955996 -139674124 + AT_rich Low_complexity Low_complexity 1 23 0 7 706 23 0 0 0 chr4 15956033 15956056 -139674064 + AT_rich Low_complexity Low_complexity 1 23 0 7 706 21 36 0 0 chr4 15956108 15956136 -139673984 + AT_rich Low_complexity Low_complexity 1 28 0 7 706 2588 217 56 33 chr4 15956388 15957349 -139672771 + L1Md_F LINE L1 173 1112 -5448 7 706 1082 124 10 0 chr4 15957350 15957544 -139672576 + L1Md_F LINE L1 1007 1202 -5358 7 706 5680 90 17 41 chr4 15957545 15958446 -139671674 + RLTR13A3 LTR ERVK 100 978 0 7 706 31719 98 3 4 chr4 15958447 15963716 -139666404 + L1_Mus1 LINE L1 1301 6566 -1 7 706 285 314 65 24 chr4 15964913 15965037 -139665083 - B1F2 SINE Alu 0 149 21 7 706 533 238 244 84 chr4 15966220 15966445 -139663675 - MTEb LTR MaLR -118 261 1 7 706 550 270 24 65 chr4 15966619 15966789 -139663331 - RSINE1 SINE B4 0 165 3 7 706 1203 68 7 0 chr4 15966894 15967041 -139663079 - B1_Mus1 SINE Alu 0 148 1 7 706 794 287 10 5 chr4 15967051 15967254 -139662866 - B3 SINE B2 -11 205 2 7 706 23 33 0 0 chr4 15967280 15967310 -139662810 + AT_rich Low_complexity Low_complexity 1 30 0 7 706 378 94 0 0 chr4 15967337 15967390 -139662730 - ORR1B1 LTR MaLR -8 386 334 7 706 245 91 0 0 chr4 15967386 15967419 -139662701 + B1_Mus2 SINE Alu 104 136 -11 7 706 1041 105 0 0 chr4 15967419 15967572 -139662548 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 7 706 2750 219 55 68 chr4 15967870 15968396 -139661724 - RMER17B LTR ERVK 0 958 425 7 706 990 156 0 0 chr4 15968396 15968569 -139661551 + G-rich Low_complexity Low_complexity 4 176 0 7 706 195 42 0 0 chr4 15968571 15968595 -139661525 + (GAGAA)n Simple_repeat Simple_repeat 1 24 0 7 706 2750 219 55 68 chr4 15968595 15968809 -139661311 - RMER17B LTR ERVK -534 424 227 7 706 355 241 0 48 chr4 15968832 15968915 -139661205 - PB1D10 SINE Alu -5 112 34 7 706 544 282 90 42 chr4 15968963 15969370 -139660750 - RLTR15 LTR ERVK -228 300 1 7 706 477 80 0 0 chr4 15969507 15969582 -139660538 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 706 326 252 259 9 chr4 15969595 15969711 -139660409 - B3A SINE B2 -50 148 4 7 706 312 94 0 0 chr4 15969938 15969991 -139660129 + (T)n Simple_repeat Simple_repeat 1 53 0 7 706 262 170 59 0 chr4 15970272 15970360 -139659760 + L1MD LINE L1 4963 5057 -1089 7 706 1217 82 0 0 chr4 15970383 15970529 -139659591 + B1_Mus1 SINE Alu 1 146 -2 7 706 463 200 39 31 chr4 15970572 15970701 -139659419 + L1M2 LINE L1 5079 5208 -935 7 706 324 180 82 0 chr4 15970701 15970762 -139659358 + Lx8 LINE L1 7260 7325 -148 7 706 205 261 0 0 chr4 15970764 15970810 -139659310 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 706 524 183 115 0 chr4 15970897 15971001 -139659119 - RSINE1 SINE B4 -37 128 13 7 706 311 105 0 17 chr4 15971040 15971098 -139659022 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 706 402 237 99 13 chr4 15971106 15971212 -139658908 - B3A SINE B2 -50 148 1 7 706 820 219 32 51 chr4 15971228 15971444 -139658676 - B3 SINE B2 0 216 5 7 706 1038 195 22 67 chr4 15971462 15971687 -139658433 - B3 SINE B2 -1 215 1 7 706 502 251 194 12 chr4 15971694 15971936 -139658184 - Charlie2b DNA MER1_type -720 2062 1777 7 706 332 296 62 31 chr4 15971961 15972090 -139658030 - Charlie2b DNA MER1_type -2479 303 171 7 706 703 284 0 0 chr4 15972895 15973057 -139657063 + Lx7 LINE L1 7091 7252 -444 7 706 1151 91 0 0 chr4 15973088 15973231 -139656889 + B1_Mus1 SINE Alu 2 144 -4 7 706 479 190 223 14 chr4 15973265 15973404 -139656716 - RMER6A LTR ERVK -10 451 284 7 706 490 97 288 44 chr4 15973417 15973587 -139656533 - RMER6A LTR ERVK -249 212 2 7 706 317 266 88 53 chr4 15973640 15973866 -139656254 + Lx7 LINE L1 7443 7676 -20 7 706 721 222 14 20 chr4 15973910 15974057 -139656063 + B1_Mur3 SINE Alu 3 148 -1 7 706 4305 248 35 33 chr4 15974172 15975322 -139654798 - Lx8 LINE L1 -6 7467 6316 7 706 234 0 0 0 chr4 15977897 15977923 -139652197 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 706 194 294 161 27 chr4 15977995 15978107 -139652013 + MIRc SINE MIR 21 147 -121 7 706 265 237 132 0 chr4 15978639 15978753 -139651367 - Lx9 LINE L1 -89 7555 7427 7 706 3000 52 3 0 chr4 15978940 15979285 -139650835 - ORR1A0 LTR MaLR 0 346 1 7 706 3441 188 63 19 chr4 15979599 15980292 -139649828 + RLTR25B LTR ERVK 1 724 -304 7 706 4528 124 27 14 chr4 15980485 15981154 -139648966 + RLTR33 LTR ERVK 1 678 0 7 706 777 176 106 0 chr4 15981721 15981863 -139648257 + RLTR25B LTR ERVK 872 1028 0 7 706 1841 159 166 80 chr4 15981903 15982314 -139647806 - RLTR41 LTR ERV1 0 446 1 7 706 1538 181 21 7 chr4 15982356 15982639 -139647481 + Lx9 LINE L1 6909 7195 -449 7 706 705 264 62 34 chr4 15982753 15982961 -139647159 + ID_B1 SINE B4 3 216 -8 7 706 458 182 11 54 chr4 15984244 15984337 -139645783 + RLTR18 LTR ERVK 26 114 -502 7 706 3729 65 32 124 chr4 15984393 15984957 -139645163 + RLTR1B LTR ERV1 1 512 0 7 706 2153 183 57 12 chr4 15985275 15985678 -139644442 + MTC LTR MaLR 1 421 0 7 88 36229 35 0 0 chr4 15985859 15991112 -139639008 + L1Md_T LINE L1 240 5589 -297 7 707 9566 6 0 0 chr4 15991112 15992108 -139638012 + L1Md_T LINE L1 5590 6585 0 7 707 396 223 83 46 chr4 15993004 15993085 -139637035 + B1_Mur4 SINE Alu 38 118 -32 7 707 878 28 0 9 chr4 15993085 15993195 -139636925 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 7 707 396 223 83 46 chr4 15993195 15993221 -139636899 + B1_Mur4 SINE Alu 119 149 -1 7 707 3840 204 21 177 chr4 15993254 15994513 -139635607 + RMER1B Other Other 2 1063 -3 7 707 1164 74 0 33 chr4 15994761 15994914 -139635206 + B1_Mus1 SINE Alu 1 148 0 7 707 183 175 0 0 chr4 15994916 15994973 -139635147 + A-rich Low_complexity Low_complexity 1 57 0 7 707 255 31 0 0 chr4 15996091 15996123 -139633997 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 7 707 1096 264 76 34 chr4 15996830 15997329 -139632791 - L1M2 LINE L1 -3309 2834 2315 7 707 3652 156 18 0 chr4 15997374 15997937 -139632183 - Lx LINE L1 -7 6647 6075 7 707 1304 124 5 16 chr4 15997940 15998129 -139631991 - B2_Mm2 SINE B2 -8 187 1 7 707 484 280 139 21 chr4 15998181 15998418 -139631702 - ORR1D2 LTR MaLR -1 369 105 7 707 484 263 84 39 chr4 15998491 15998669 -139631451 - MTE-int LTR MaLR -45 1535 1350 7 707 842 293 58 17 chr4 15998700 15998992 -139631128 - MTE-int LTR MaLR -1275 305 2 7 707 568 248 30 88 chr4 15999015 15999417 -139630703 - RMER17C LTR ERVK -74 336 1 7 707 1330 171 137 31 chr4 15999417 15999854 -139630266 - RMER17C-int LTR ERVK 0 3238 2756 7 707 365 176 56 8 chr4 15999896 16000000 -139630120 - RMER13A LTR ERVK -124 784 632 7 707 3962 138 27 25 chr4 16000000 16000667 -139629453 - RMER13B LTR ERVK -240 668 1 1 707 532 140 135 95 chr4 16000668 16000794 -139629326 - RMER17C-int LTR ERVK -490 2748 2618 2 707 911 154 0 126 chr4 16000793 16001023 -139629097 - RMER17C-int LTR ERVK -819 2419 2219 2 707 207 0 0 0 chr4 16001244 16001267 -139628853 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 707 3452 194 54 21 chr4 16001325 16002161 -139627959 - RLTR19-int LTR ERVK -2944 3193 2331 4 707 337 198 0 94 chr4 16002226 16002332 -139627788 - RLTR19-int LTR ERVK -3810 2327 2232 4 707 1143 83 0 0 chr4 16002424 16002569 -139627551 - B1_Mus1 SINE Alu -2 146 2 5 707 481 351 46 77 chr4 16003045 16003193 -139626927 - ORR1E LTR MaLR -21 338 203 6 707 1867 174 88 3 chr4 16003193 16003556 -139626564 - ORR1B1 LTR MaLR 0 394 1 7 707 481 351 46 77 chr4 16003556 16003756 -139626364 - ORR1E LTR MaLR -157 202 1 6 707 337 317 116 29 chr4 16003840 16004012 -139626108 + B4A SINE B4 6 192 -100 8 707 1757 302 30 11 chr4 16004027 16004649 -139625471 + Lx7 LINE L1 6651 7284 -412 9 707 242 230 145 30 chr4 16004691 16004857 -139625263 + Lx7 LINE L1 7489 7673 -23 9 707 292 257 14 14 chr4 16004901 16004972 -139625148 + B4A SINE B4 217 287 -5 8 707 1254 67 56 11 chr4 16005409 16005589 -139624531 - B2_Mm2 SINE B2 -7 188 1 1 707 1017 107 0 0 chr4 16006018 16006158 -139623962 + B1_Mus1 SINE Alu 3 142 -6 1 707 195 114 0 0 chr4 16006170 16006205 -139623915 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 707 252 357 38 15 chr4 16006623 16006754 -139623366 - MIRc SINE MIR -114 154 21 1 707 501 203 21 3 chr4 16007163 16007269 -139622851 - B3A SINE B2 -111 105 1 1 707 248 284 45 0 chr4 16007708 16007775 -139622345 - ID4 SINE ID -13 70 1 1 707 3016 209 42 53 chr4 16008044 16008464 -139621656 - RMER1C Other Other -9 1333 905 1 707 303 93 0 0 chr4 16008464 16008507 -139621613 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 707 3016 209 42 53 chr4 16008507 16008843 -139621277 - RMER1C Other Other -438 904 587 1 707 1031 242 44 31 chr4 16009276 16009773 -139620347 - RMER10B LTR ERVL -3 395 1 1 707 400 301 91 15 chr4 16010677 16010876 -139619244 + L1MB5 LINE L1 5907 6120 -54 1 707 498 326 16 90 chr4 16011024 16011213 -139618907 + B3A SINE B2 27 201 -15 2 707 794 142 0 4 chr4 16011214 16011470 -139618650 + (CA)n Simple_repeat Simple_repeat 1 255 0 2 707 856 117 0 16 chr4 16011490 16011673 -139618447 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 707 292 204 64 16 chr4 16012249 16012337 -139617783 - ORR1E LTR MaLR 0 379 276 2 707 2922 181 8 8 chr4 16012350 16012872 -139617248 - RMER5 LTR ERV1 -12 522 1 2 707 366 243 0 0 chr4 16013010 16013084 -139617036 - ORR1E LTR MaLR -285 74 1 2 707 978 211 87 0 chr4 16013444 16013652 -139616468 + URR1A DNA MER1_type 1 226 0 2 707 322 256 59 35 chr4 16014065 16014150 -139615970 + B4 SINE B4 183 269 -23 2 707 264 149 0 0 chr4 16014194 16014241 -139615879 + (TCCCC)n Simple_repeat Simple_repeat 4 50 0 2 707 640 176 114 8 chr4 16014243 16014375 -139615745 - B1_Mus2 SINE Alu -1 146 1 2 707 258 279 150 83 chr4 16014264 16014397 -139615723 - MT2B LTR ERVL -336 265 124 2 707 23 0 0 0 chr4 16014579 16014602 -139615518 + GC_rich Low_complexity Low_complexity 1 23 0 2 707 477 0 0 0 chr4 16015605 16015658 -139614462 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 707 220 219 0 0 chr4 16016956 16016997 -139613123 + A-rich Low_complexity Low_complexity 2 42 0 3 707 914 344 20 41 chr4 16017006 16017397 -139612723 + Tigger7 DNA MER2_type 6 388 -2103 3 707 655 217 7 20 chr4 16017430 16017576 -139612544 - B3 SINE B2 0 216 73 3 707 231 200 83 62 chr4 16017617 16017713 -139612407 + Tigger7 DNA MER2_type 380 477 -2014 3 707 617 234 108 0 chr4 16017719 16017886 -139612234 + Tigger7 DNA MER2_type 2307 2491 0 3 707 471 254 0 56 chr4 16018074 16018199 -139611921 - PB1D9 SINE Alu 0 120 3 3 707 450 317 128 64 chr4 16018498 16018825 -139611295 - MTEa LTR MaLR -5 374 27 3 707 6639 109 34 9 chr4 16019016 16020036 -139610084 + Lx2 LINE L1 5952 6997 0 3 707 5144 75 6 1 chr4 16020249 16020930 -139609190 - L1_Mus2 LINE L1 0 6566 5883 3 707 2851 84 2 0 chr4 16020930 16021359 -139608761 - MusHAL1 LINE L1 -712 2000 1571 3 707 404 314 83 71 chr4 16022315 16022657 -139607463 - MLT2B3 LTR ERVL -44 510 1 3 707 434 262 24 127 chr4 16022657 16022823 -139607297 - MTEa LTR MaLR -230 149 1 4 707 517 237 0 20 chr4 16022957 16023056 -139607064 + B1_Mur2 SINE Alu 46 142 -7 4 707 6720 10 0 0 chr4 16023064 16023867 -139606253 - L1_Mm LINE L1 -2898 2985 2183 4 707 13906 9 0 1 chr4 16023863 16025513 -139604607 + L1Md_A LINE L1 3936 5584 -299 4 707 8779 18 0 0 chr4 16025515 16026511 -139603609 + L1Md_A LINE L1 5587 6582 0 4 707 25 51 0 0 chr4 16026838 16026877 -139603243 + AT_rich Low_complexity Low_complexity 1 39 0 4 707 3471 136 68 23 chr4 16027231 16027888 -139602232 - RMER6C LTR ERVK 0 690 4 4 707 430 335 59 0 chr4 16028073 16028225 -139601895 + RSINE1 SINE B4 3 163 -2 4 707 363 136 0 0 chr4 16028693 16028752 -139601368 + (A)n Simple_repeat Simple_repeat 1 59 0 4 707 457 236 27 0 chr4 16029834 16029944 -139600176 + PB1D9 SINE Alu 1 113 -7 4 707 213 154 0 0 chr4 16030359 16030398 -139599722 + (ATG)n Simple_repeat Simple_repeat 1 39 0 4 707 1270 245 43 99 chr4 16030488 16030882 -139599238 - MTE2a LTR MaLR -5 374 3 5 707 228 163 0 0 chr4 16031013 16031056 -139599064 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 707 1239 282 68 17 chr4 16031140 16031494 -139598626 + MTD LTR MaLR 48 419 0 5 707 770 158 0 15 chr4 16031523 16031658 -139598462 - B1_Mur3 SINE Alu 0 149 17 5 707 352 177 87 103 chr4 16031551 16031677 -139598443 - MT2B LTR ERVL -323 278 155 5 707 2737 29 3 0 chr4 16031690 16032032 -139598088 - L1Md_F2 LINE L1 -569 6013 5671 5 707 4606 46 0 14 chr4 16032032 16032608 -139597512 + L1Md_F2 LINE L1 6012 6579 -3 5 707 2215 203 105 42 chr4 16032629 16033267 -139596853 + L1_Mur3 LINE L1 287 964 -6748 5 707 2102 146 21 0 chr4 16033262 16033646 -139596474 - L1_Mur3 LINE L1 -1377 4503 4112 5 707 544 289 145 60 chr4 16033745 16034014 -139596106 + RMER21B LTR ERV1 275 566 -276 5 707 280 290 7 95 chr4 16034037 16034174 -139595946 + RMER21B LTR ERV1 660 784 -58 5 707 2581 217 214 36 chr4 16034186 16035432 -139594688 - L1_Mur3 LINE L1 -1771 4109 2642 5 707 560 297 146 28 chr4 16036477 16036831 -139593289 + MLT1E2 LTR MaLR 234 618 -9 5 707 1526 322 133 26 chr4 16037038 16037878 -139592242 + Lx8 LINE L1 6274 7202 -271 6 707 4434 106 128 84 chr4 16037878 16038746 -139591374 - RMER17A2 LTR ERVK 0 906 1 6 707 1526 322 133 26 chr4 16038746 16038984 -139591136 + Lx8 LINE L1 7203 7467 -6 6 707 468 279 12 29 chr4 16040055 16040225 -139589895 - Lx8 LINE L1 -1177 6296 6130 6 707 405 0 0 0 chr4 16040226 16040271 -139589849 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 6 707 600 233 14 50 chr4 16040292 16040432 -139589688 - B1_Mus1 SINE Alu -11 137 3 6 707 1412 287 100 22 chr4 16040562 16041190 -139588930 + Lx8 LINE L1 6797 7473 0 6 707 201 196 0 0 chr4 16041321 16041367 -139588753 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 707 320 341 27 59 chr4 16041439 16041679 -139588441 - RSINE1 SINE B4 -61 231 3 6 707 5726 70 15 9 chr4 16042329 16043082 -139587038 - L1_Mus1 LINE L1 0 6567 5811 6 707 373 244 37 0 chr4 16043491 16043573 -139586547 - PB1D9 SINE Alu -8 112 28 6 707 183 333 159 95 chr4 16043811 16043937 -139586183 + L2b LINE L2 3218 3351 -24 7 707 666 264 5 64 chr4 16044728 16044930 -139585190 - B3A SINE B2 -5 193 4 7 707 501 314 83 55 chr4 16045093 16045420 -139584700 - MLT1D LTR MaLR -80 425 90 7 707 270 330 88 42 chr4 16048113 16048306 -139581814 - MER113 DNA MER1_type -316 205 4 7 707 192 260 13 76 chr4 16048347 16048426 -139581694 - L2a LINE L2 -1 3425 3352 7 707 805 167 23 8 chr4 16048601 16048734 -139581386 - B1_Mur4 SINE Alu -13 137 3 7 707 270 286 0 0 chr4 16048971 16049041 -139581079 + GA-rich Low_complexity Low_complexity 2 71 0 7 707 519 262 35 14 chr4 16049100 16049243 -139580877 - ID_B1 SINE B4 -1 223 78 7 707 423 106 0 0 chr4 16049396 16049462 -139580658 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 707 815 190 57 42 chr4 16049464 16049656 -139580464 - B3 SINE B2 -20 196 2 7 707 21 0 0 0 chr4 16050538 16050559 -139579561 + AT_rich Low_complexity Low_complexity 1 21 0 8 707 594 259 38 0 chr4 16051886 16052017 -139578103 - RSINE1 SINE B4 -29 136 1 8 707 511 262 111 0 chr4 16053594 16053720 -139576400 + RSINE1 SINE B4 1 140 -25 8 707 34 24 0 0 chr4 16053886 16053927 -139576193 + AT_rich Low_complexity Low_complexity 1 41 0 8 707 622 266 69 5 chr4 16053928 16054117 -139576003 - B3 SINE B2 -15 201 1 8 707 344 77 19 0 chr4 16054502 16054554 -139575566 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 707 307 292 0 0 chr4 16055063 16055135 -139574985 - ID4 SINE ID -11 72 1 8 707 669 86 0 9 chr4 16055443 16055549 -139574571 + Lx LINE L1 6544 6648 -6 8 707 425 277 190 0 chr4 16055613 16055750 -139574370 + RSINE1 SINE B4 3 165 0 8 707 295 23 22 22 chr4 16056707 16056752 -139573368 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 707 333 0 0 0 chr4 16056754 16056791 -139573329 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 707 180 0 0 0 chr4 16056791 16056810 -139573310 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 707 227 31 31 0 chr4 16056931 16056963 -139573157 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 9 707 237 322 103 40 chr4 16057025 16057151 -139572969 + MIRb SINE MIR 127 260 -8 9 707 543 293 0 41 chr4 16057299 16057445 -139572675 - B1F SINE Alu -8 141 2 9 707 461 216 14 43 chr4 16057624 16057754 -139572366 - PB1D9 SINE Alu -22 127 6 9 707 306 0 0 0 chr4 16058108 16058142 -139571978 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 707 251 336 35 35 chr4 16058146 16058260 -139571860 - PB1 SINE Alu -13 114 1 9 707 418 208 53 23 chr4 16058643 16058776 -139571344 - B1F SINE Alu -8 141 5 9 707 218 203 16 33 chr4 16058800 16058861 -139571259 + A-rich Low_complexity Low_complexity 3 62 0 9 707 214 98 19 19 chr4 16059503 16059555 -139570565 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 707 309 335 20 24 chr4 16060166 16060414 -139569706 + L1M3 LINE L1 4770 5016 -1124 1 707 1284 154 14 5 chr4 16060495 16060716 -139569404 + URR1A DNA MER1_type 1 223 -3 1 707 227 36 0 0 chr4 16060861 16060889 -139569231 + RSINE1 SINE B4 13 40 -125 1 707 332 301 37 117 chr4 16060912 16061074 -139569046 + RSINE1 SINE B4 13 161 -4 1 707 232 239 0 0 chr4 16061084 16061130 -139568990 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 707 240 300 17 0 chr4 16061132 16061192 -139568928 - PB1 SINE Alu -26 101 41 1 707 10686 19 9 0 chr4 16061603 16063591 -139566529 - L1Md_A LINE L1 0 6582 4609 1 707 269 238 126 23 chr4 16063588 16063864 -139566256 - L1M4 LINE L1 -681 5490 5182 1 707 497 274 91 40 chr4 16063984 16064182 -139565938 - B4A SINE B4 -81 211 4 1 707 256 289 130 37 chr4 16064416 16064524 -139565596 + L2a LINE L2 2716 2833 -586 1 707 274 338 49 42 chr4 16064593 16064735 -139565385 + L2a LINE L2 2927 3069 -357 1 707 696 211 14 40 chr4 16065889 16066037 -139564083 + B1_Mur2 SINE Alu 1 144 -5 1 707 309 347 64 8 chr4 16066042 16066167 -139563953 - MIRc SINE MIR -118 150 19 1 707 1483 214 92 93 chr4 16067172 16067459 -139562661 + RMER2 LTR ERV1 1 290 -277 1 707 1204 61 0 0 chr4 16067459 16067606 -139562514 + B1_Mus2 SINE Alu 1 147 0 1 707 1483 214 92 93 chr4 16067606 16067886 -139562234 + RMER2 LTR ERV1 291 567 0 1 707 597 186 290 12 chr4 16068099 16068268 -139561852 + B3 SINE B2 1 216 0 1 707 503 319 42 13 chr4 16068455 16068766 -139561354 + L1M2 LINE L1 2631 2950 -3193 1 707 12863 144 24 17 chr4 16068763 16069890 -139560230 + Lx LINE L1 3462 4616 -1261 1 707 3670 57 36 2 chr4 16069890 16070361 -139559759 + L1_Mus1 LINE L1 6080 6566 -1 1 707 12863 144 24 17 chr4 16070361 16070605 -139559515 + Lx LINE L1 4617 4842 -1035 1 707 3528 15 2 0 chr4 16070605 16071000 -139559120 + MTA_Mm LTR MaLR 1 396 0 1 707 12863 115 28 11 chr4 16071000 16072774 -139557346 + Lx LINE L1 4843 6653 -1 1 707 1583 154 28 155 chr4 16072829 16073299 -139556821 - RMER17C LTR ERVK 0 410 1 1 707 6852 76 9 0 chr4 16073323 16074294 -139555826 - L1_Mus2 LINE L1 -1263 4620 3641 1 707 8929 75 4 6 chr4 16074292 16076247 -139553873 + L1_Mus2 LINE L1 4613 6564 -2 1 707 369 281 64 72 chr4 16076394 16076754 -139553366 + L1_Mur3 LINE L1 3170 3526 -2354 1 707 1640 157 20 37 chr4 16076754 16077051 -139553069 + MTC LTR MaLR 130 421 0 1 707 1808 197 67 101 chr4 16077110 16077575 -139552545 + RLTR11A LTR ERVK 10 446 -82 1 707 318 106 0 0 chr4 16077575 16077622 -139552498 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 707 1808 197 67 101 chr4 16077622 16077693 -139552427 + RLTR11A LTR ERVK 447 528 0 1 707 823 231 30 26 chr4 16077693 16077964 -139552156 + L1M2 LINE L1 3647 3918 -2225 1 707 26 0 0 0 chr4 16078265 16078291 -139551829 + AT_rich Low_complexity Low_complexity 1 26 0 1 707 620 254 97 42 chr4 16080367 16080530 -139549590 + B4A SINE B4 3 186 -106 1 707 414 0 0 0 chr4 16080530 16080576 -139549544 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 707 390 21 0 0 chr4 16080576 16080622 -139549498 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 707 620 254 97 42 chr4 16080622 16080695 -139549425 + B4A SINE B4 187 251 -41 1 707 347 275 84 0 chr4 16080715 16080857 -139549263 + L1MD LINE L1 5249 5402 -744 1 707 226 256 90 0 chr4 16080906 16080984 -139549136 + L1MD1 LINE L1 6144 6228 -14 1 707 1001 131 23 6 chr4 16081078 16081255 -139548865 + Lx LINE L1 6472 6651 -3 1 707 595 206 9 0 chr4 16081297 16081404 -139548716 + PB1D9 SINE Alu 9 116 -4 1 707 516 230 150 58 chr4 16081472 16081698 -139548422 - RMER20B LTR ERVK -238 389 143 1 707 2492 104 25 28 chr4 16082495 16082892 -139547228 - Lx LINE L1 -1 6653 6258 1 707 480 139 0 0 chr4 16083136 16083215 -139546905 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 707 315 71 0 0 chr4 16083375 16083417 -139546703 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 707 312 333 27 68 chr4 16083422 16083570 -139546550 - RSINE1 SINE B4 -15 150 9 1 707 528 59 0 0 chr4 16083985 16084053 -139546067 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 1 707 1195 74 0 0 chr4 16084053 16084201 -139545919 - B1_Mus1 SINE Alu 0 148 1 1 707 216 0 0 0 chr4 16084641 16084665 -139545455 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 707 631 303 80 48 chr4 16084720 16085032 -139545088 + Charlie7 DNA MER1_type 146 467 -2145 1 707 224 406 28 0 chr4 16085622 16085728 -139544392 + MIR SINE MIR 25 133 -129 1 707 1026 140 120 43 chr4 16086060 16086269 -139543851 - URR1B DNA MER1_type 0 225 1 1 707 189 0 0 0 chr4 16086502 16086523 -139543597 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 707 408 20 0 0 chr4 16086572 16086621 -139543499 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 707 274 302 4 12 chr4 16087859 16087943 -139542177 + B4 SINE B4 22 107 -185 1 707 532 0 29 0 chr4 16087961 16088029 -139542091 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 707 249 196 0 21 chr4 16088036 16088083 -139542037 + B4 SINE B4 235 280 -12 1 707 387 0 0 0 chr4 16089170 16089213 -139540907 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 707 200 86 29 0 chr4 16089832 16089867 -139540253 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 1 707 342 299 27 12 chr4 16089920 16090077 -139540043 - MER33 DNA MER1_type -144 180 19 1 707 254 252 0 53 chr4 16090748 16090899 -139539221 + CT-rich Low_complexity Low_complexity 3 145 0 1 707 342 234 0 54 chr4 16090920 16091105 -139539015 + CT-rich Low_complexity Low_complexity 1 175 0 1 707 227 109 43 21 chr4 16091669 16091716 -139538404 + A-rich Low_complexity Low_complexity 1 48 0 1 707 641 259 54 0 chr4 16091964 16092149 -139537971 + B3A SINE B2 2 196 -2 1 707 188 216 0 19 chr4 16092187 16092239 -139537881 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 707 279 191 0 0 chr4 16092719 16092782 -139537338 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 707 688 303 26 5 chr4 16093393 16093582 -139536538 + MTE2b LTR MaLR 186 378 -1 1 707 268 340 0 74 chr4 16093644 16093752 -139536368 + PB1D10 SINE Alu 1 100 -17 1 707 343 295 118 52 chr4 16093724 16093935 -139536185 + MLT1C LTR MaLR 136 360 -107 1 707 361 327 51 60 chr4 16093971 16094269 -139535851 - ORR1E LTR MaLR -6 364 77 1 707 239 275 143 80 chr4 16094237 16094404 -139535716 - ORR1E LTR MaLR -229 179 3 1 707 281 301 64 40 chr4 16094412 16094585 -139535535 - L1MD2 LINE L1 -440 5919 5743 1 707 189 107 0 0 chr4 16094589 16094617 -139535503 + (CAT)n Simple_repeat Simple_repeat 3 30 0 1 707 771 192 14 7 chr4 16094624 16094771 -139535349 - B1_Mur2 SINE Alu 0 149 2 1 707 724 180 161 6 chr4 16094792 16094954 -139535166 - B3 SINE B2 -28 188 2 1 707 188 333 70 23 chr4 16095423 16095509 -139534611 - L2c LINE L2 -7 3380 3291 1 707 196 336 33 33 chr4 16095609 16095729 -139534391 - MIR SINE MIR -71 137 18 1 707 1028 310 73 50 chr4 16096705 16097228 -139532892 + MER90a LTR ERV1 70 604 -10 1 707 2329 173 68 4 chr4 16097437 16097522 -139532598 - RLTR16 LTR ERVK -4 501 415 1 707 459 0 0 0 chr4 16097522 16097573 -139532547 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 707 2329 173 68 4 chr4 16097573 16097958 -139532162 - RLTR16 LTR ERVK -91 414 2 1 707 267 360 61 80 chr4 16098370 16098533 -139531587 + B4 SINE B4 82 241 -51 1 707 257 0 0 29 chr4 16098567 16098601 -139531519 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 707 325 217 29 14 chr4 16099068 16099138 -139530982 - B1F SINE Alu -3 146 76 1 707 2339 167 43 5 chr4 16099142 16099534 -139530586 - MTC LTR MaLR -5 416 10 1 707 243 0 0 0 chr4 16100596 16100623 -139529497 + (T)n Simple_repeat Simple_repeat 1 27 0 1 707 886 118 27 20 chr4 16100623 16100770 -139529350 - B1_Mur4 SINE Alu 0 150 3 1 707 180 0 0 0 chr4 16101052 16101072 -139529048 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 707 251 98 32 32 chr4 16101623 16101686 -139528434 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 707 675 0 0 0 chr4 16101810 16101885 -139528235 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 707 408 293 65 55 chr4 16102068 16102267 -139527853 - Lx7 LINE L1 -411 7285 7085 1 707 4767 138 19 53 chr4 16102270 16103175 -139526945 - RLTR13A3 LTR ERVK 0 978 1 1 707 3652 278 58 12 chr4 16103176 16104332 -139525788 - Lx7 LINE L1 -612 7084 5876 1 707 414 0 0 0 chr4 16104332 16104378 -139525742 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1 707 304 223 47 37 chr4 16104415 16104522 -139525598 - Lx7 LINE L1 -1809 5887 5752 1 707 6562 65 0 3 chr4 16104532 16105405 -139524715 - L1_Mus1 LINE L1 -1 6566 5697 1 707 1202 272 31 23 chr4 16105408 16105796 -139524324 - L1_Mur3 LINE L1 -89 5791 5401 1 707 1284 236 161 51 chr4 16105796 16106482 -139523638 + RMER12 LTR ERVK 1 966 -438 1 707 24077 134 17 7 chr4 16106543 16111577 -139518543 - L1_Mus4 LINE L1 -5 6631 1541 1 707 4959 73 1 0 chr4 16111569 16112244 -139517876 + L1_Mm LINE L1 4911 5614 -542 1 707 7924 52 2 6 chr4 16112244 16113244 -139516876 + L1Md_F2 LINE L1 5587 6582 0 1 707 1225 256 7 22 chr4 16113244 16113285 -139516835 + L1_Mm LINE L1 5615 5650 -506 1 707 16305 70 0 0 chr4 16113462 16115951 -139514169 - L1Md_Gf LINE L1 -2353 3533 947 1 707 7064 67 0 0 chr4 16115949 16116895 -139513225 + L1_Mm LINE L1 4605 5550 -333 1 707 528 247 57 51 chr4 16116895 16116931 -139513189 + RMER12 LTR ERVK 1059 1089 -233 1 707 8042 47 2 3 chr4 16116931 16117917 -139512203 + L1Md_F2 LINE L1 5587 6571 -11 1 707 528 247 57 51 chr4 16117917 16118038 -139512082 + RMER12 LTR ERVK 1090 1217 -105 1 707 3594 208 131 19 chr4 16118104 16118804 -139511316 - L1_Mur3 LINE L1 -474 5406 4646 1 707 315 104 0 0 chr4 16118804 16118852 -139511268 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 707 3594 208 131 19 chr4 16118852 16119285 -139510835 - L1_Mur3 LINE L1 -1235 4645 4148 1 707 442 219 9 9 chr4 16119286 16119392 -139510728 - L1_Mur3 LINE L1 -2064 3816 3711 1 707 6430 92 8 1 chr4 16119390 16120320 -139509800 + Lx LINE L1 5713 6648 -6 1 707 4356 248 47 56 chr4 16120319 16121112 -139509008 - L1_Mur3 LINE L1 -2177 3703 2980 1 707 201 39 0 0 chr4 16121112 16121138 -139508982 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 707 4356 248 47 56 chr4 16121138 16121167 -139508953 - L1_Mur3 LINE L1 -2901 2979 2957 1 707 2672 108 13 76 chr4 16121167 16121617 -139508503 + BGLII_Mus LTR ERVK 1 422 0 1 88 4356 248 47 56 chr4 16121617 16122491 -139507629 - L1_Mur3 LINE L1 -2924 2956 2021 1 708 359 293 0 20 chr4 16122509 16122659 -139507461 - L1_Mur3 LINE L1 -6713 1015 869 1 708 314 293 0 66 chr4 16124182 16124288 -139505832 + RSINE1 SINE B4 47 145 -20 1 708 29 0 0 0 chr4 16124307 16124336 -139505784 + AT_rich Low_complexity Low_complexity 1 29 0 1 708 528 136 16 49 chr4 16124414 16124534 -139505586 - B1_Mus1 SINE Alu 0 150 34 1 708 237 266 89 69 chr4 16124460 16124561 -139505559 - RLTR25A LTR ERVK -521 582 480 1 708 22 0 0 0 chr4 16124567 16124589 -139505531 + AT_rich Low_complexity Low_complexity 1 22 0 1 708 3039 40 0 0 chr4 16124694 16125048 -139505072 - IAPEY2_LTR LTR ERVK -3 354 1 2 708 263 251 183 4 chr4 16125060 16125159 -139504961 + MIRb SINE MIR 5 119 -157 2 708 839 322 51 86 chr4 16125329 16125818 -139504302 + MLT1D LTR MaLR 26 497 -8 2 708 309 183 0 0 chr4 16126989 16127049 -139503071 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 2 708 180 0 0 0 chr4 16127422 16127442 -139502678 + (T)n Simple_repeat Simple_repeat 1 20 0 2 708 1032 260 114 32 chr4 16128444 16128714 -139501406 - MT2A LTR ERVL 0 533 238 2 708 180 0 0 0 chr4 16128714 16128734 -139501386 + (CAG)n Simple_repeat Simple_repeat 2 21 0 2 708 1032 260 114 32 chr4 16128734 16128956 -139501164 - MT2A LTR ERVL -296 237 1 2 708 958 253 71 34 chr4 16128967 16129462 -139500658 - L1M2 LINE L1 -915 5228 4716 2 708 278 329 113 11 chr4 16129653 16129936 -139500184 - L1_Mur3 LINE L1 -3326 2554 2243 2 708 465 19 0 0 chr4 16130059 16130113 -139500007 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 708 604 282 120 63 chr4 16130164 16130463 -139499657 - MLT1A0 LTR MaLR -48 317 2 2 708 369 284 48 19 chr4 16130490 16130594 -139499526 - PB1D10 SINE Alu -1 116 10 2 708 189 323 52 41 chr4 16130779 16130876 -139499244 - L2a LINE L2 -37 3389 3292 2 708 3009 222 120 24 chr4 16131238 16131869 -139498251 - Lx6 LINE L1 -5 7455 6800 2 708 1710 196 78 5 chr4 16131869 16132243 -139497877 + MTB_Mm LTR MaLR 4 404 -3 2 708 3009 222 120 24 chr4 16132243 16132318 -139497802 - Lx6 LINE L1 -661 6799 6698 2 708 485 0 33 0 chr4 16132318 16132378 -139497742 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 2 708 3009 222 120 24 chr4 16132378 16132488 -139497632 - Lx6 LINE L1 -763 6697 6560 2 708 992 267 29 14 chr4 16132519 16132800 -139497320 - Lx6 LINE L1 -1163 6297 6013 2 708 7488 90 6 1 chr4 16132796 16134173 -139495947 + L1_Mus3 LINE L1 5252 6635 -3 2 708 252 0 0 0 chr4 16134236 16134264 -139495856 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2 708 620 276 26 46 chr4 16134577 16134771 -139495349 - B3A SINE B2 0 198 9 2 708 385 245 165 0 chr4 16135907 16136073 -139494047 + RMER1B Other Other 730 855 -211 2 708 2671 207 54 25 chr4 16136291 16136944 -139493176 + RMER1C Other Other 671 1342 0 2 708 268 229 63 71 chr4 16136947 16137030 -139493090 - Lx7 LINE L1 -8 7688 7602 2 708 3601 51 51 0 chr4 16137030 16137482 -139492638 - MT2C_Mm LTR ERVL 0 475 1 2 708 268 229 63 71 chr4 16137482 16137525 -139492595 - Lx7 LINE L1 -95 7601 7563 2 708 426 108 0 0 chr4 16137535 16137600 -139492520 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 708 2050 220 108 8 chr4 16137623 16138214 -139491906 - Lx7 LINE L1 -297 7399 6750 2 708 2687 35 32 0 chr4 16138214 16138554 -139491566 + IAPEY2_LTR LTR ERVK 4 354 -3 2 708 3219 221 70 101 chr4 16138559 16139722 -139490398 - Lx7 LINE L1 -945 6751 5624 2 708 437 167 12 0 chr4 16139720 16139804 -139490316 + L1_Mur3 LINE L1 4986 5070 -810 2 708 1429 199 145 19 chr4 16139811 16140010 -139490110 - ORR1B2 LTR MaLR -8 359 166 2 708 668 12 12 0 chr4 16140010 16140091 -139490029 + (GA)n Simple_repeat Simple_repeat 2 83 0 2 708 1429 199 145 19 chr4 16140091 16140208 -139489912 - ORR1B2 LTR MaLR -202 165 4 2 708 2337 209 35 2 chr4 16140217 16140758 -139489362 + L1_Mur3 LINE L1 5076 5634 -246 2 708 1137 150 87 0 chr4 16140764 16140971 -139489149 - URR1B DNA MER1_type 0 225 1 2 708 1325 288 57 17 chr4 16141021 16141132 -139488988 + MTD LTR MaLR 1 108 -311 2 708 285 29 0 0 chr4 16141132 16141166 -139488954 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 708 1325 288 57 17 chr4 16141166 16141457 -139488663 + MTD LTR MaLR 109 419 0 2 708 1228 295 40 14 chr4 16141463 16141810 -139488310 + MTE2b LTR MaLR 24 379 0 2 708 21 0 0 0 chr4 16142073 16142094 -139488026 + AT_rich Low_complexity Low_complexity 1 21 0 2 708 1775 229 0 6 chr4 16142632 16142988 -139487132 + Lx5 LINE L1 6691 7044 -6 2 708 554 268 211 0 chr4 16144007 16144235 -139485885 - MER2 DNA MER2_type 0 345 70 2 708 373 286 135 25 chr4 16144612 16144954 -139485166 + L1M4 LINE L1 5040 5428 -751 2 708 31 0 0 24 chr4 16144989 16145015 -139485105 + AT_rich Low_complexity Low_complexity 1 26 0 2 708 284 362 142 0 chr4 16145015 16145156 -139484964 - RSINE1 SINE B4 -2 163 3 2 708 31 0 0 24 chr4 16145156 16145171 -139484949 + AT_rich Low_complexity Low_complexity 1 15 0 2 708 796 325 37 19 chr4 16145183 16145562 -139484558 + Lx8 LINE L1 6241 6626 -847 2 708 912 308 55 26 chr4 16145566 16146060 -139484060 + Lx8 LINE L1 6937 7444 -29 2 708 240 252 105 19 chr4 16146106 16146211 -139483909 + L1M4 LINE L1 5718 5831 -348 2 708 300 339 72 33 chr4 16146433 16146489 -139483631 + L1MA4 LINE L1 5020 5087 -1056 2 708 2433 174 5 2 chr4 16146489 16146909 -139483211 + MTC LTR MaLR 1 421 0 2 708 300 339 72 33 chr4 16146909 16147032 -139483088 + L1MA4 LINE L1 5088 5206 -937 2 708 1698 20 5 0 chr4 16147066 16147269 -139482851 + MTA_Mm LTR MaLR 1 204 -192 2 708 1039 95 0 26 chr4 16147269 16147421 -139482699 + B1_Mus1 SINE Alu 1 148 0 2 708 480 167 60 0 chr4 16147452 16147536 -139482584 + B2_Mm2 SINE B2 4 92 -103 2 708 240 269 64 136 chr4 16147649 16147774 -139482346 - LTR75 LTR ERVL -327 235 120 2 708 1540 64 20 0 chr4 16147689 16147892 -139482228 + MTA_Mm LTR MaLR 190 396 0 2 708 974 268 58 21 chr4 16148088 16148519 -139481601 + L1MA4 LINE L1 5480 5926 -374 2 708 879 187 22 28 chr4 16148556 16148782 -139481338 + Lx6 LINE L1 7061 7266 -194 2 708 596 357 118 38 chr4 16149021 16149224 -139480896 - L2 LINE L2 -1042 2377 2170 2 708 2699 112 82 5 chr4 16149224 16149637 -139480483 - BGLII_A LTR ERVK 0 445 1 2 708 596 357 118 38 chr4 16149637 16150120 -139480000 - L2 LINE L2 -1250 2169 1637 2 708 226 176 20 0 chr4 16150121 16150172 -139479948 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 708 2000 236 55 8 chr4 16150225 16150694 -139479426 + MTE-int LTR MaLR 995 1485 -95 2 708 1263 327 39 30 chr4 16151187 16151531 -139478589 - RodERV21-int LTR ERV1 -198 4793 4455 2 708 2647 226 45 59 chr4 16151531 16152398 -139477722 - RLTR13A LTR ERVK 0 855 1 2 708 1541 331 84 39 chr4 16152398 16153866 -139476254 - RodERV21-int LTR ERV1 -537 4454 2911 2 708 278 259 39 50 chr4 16154275 16154520 -139475600 - RodERV21-int LTR ERV1 -2657 4949 4890 2 708 380 236 48 48 chr4 16154982 16155191 -139474929 - RodERV21-int LTR ERV1 -1987 5104 4896 2 708 486 323 29 49 chr4 16156003 16156449 -139473671 - RodERV21-int LTR ERV1 -3017 4074 3638 2 708 2986 82 7 2 chr4 16156492 16156907 -139473213 + BGLII LTR ERVK 3 419 -2 2 708 5224 274 10 27 chr4 16157048 16158508 -139471612 - RodERV21-int LTR ERV1 -2273 2718 1285 2 708 820 305 27 63 chr4 16158700 16159144 -139470976 - RodERV21-int LTR ERV1 -3855 1136 709 2 708 1164 137 24 73 chr4 16159921 16160188 -139469932 - RLTR9F LTR ERVK -3 417 180 2 708 6267 111 59 12 chr4 16160188 16161265 -139468855 - ETnERV2-int LTR ERVK -5223 2183 1056 2 708 185 0 0 39 chr4 16161265 16161291 -139468829 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2 708 409 222 145 91 chr4 16161295 16161592 -139468528 - ETnERV2-int LTR ERVK -2999 315 3 2 708 2348 114 75 10 chr4 16161598 16161765 -139468355 - RLTR9F LTR ERVK -1 414 235 2 708 198 0 0 0 chr4 16161765 16161787 -139468333 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 2 708 2348 114 75 10 chr4 16161787 16162008 -139468112 - RLTR9F LTR ERVK -181 234 2 2 708 287 281 24 0 chr4 16162346 16162428 -139467692 + MTEa-int LTR MaLR 1475 1558 -22 2 708 1279 239 119 3 chr4 16162447 16162782 -139467338 + MTEa LTR MaLR 6 379 0 2 708 1769 165 38 88 chr4 16162805 16163203 -139466917 - ORR1C1 LTR MaLR 0 378 1 2 708 726 197 35 0 chr4 16163741 16163883 -139466237 - B1_Mus2 SINE Alu 0 147 1 2 708 636 125 16 8 chr4 16164159 16164288 -139465832 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2 708 203 56 83 0 chr4 16164771 16164807 -139465313 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 708 21 36 0 0 chr4 16164936 16164964 -139465156 + AT_rich Low_complexity Low_complexity 1 28 0 2 708 7676 116 39 4 chr4 16164973 16166685 -139463435 - Lx3B LINE L1 -54 6919 5178 2 708 3234 3 0 0 chr4 16167257 16167643 -139462477 + L1Md_A LINE L1 6225 6582 0 2 708 397 297 52 17 chr4 16167722 16167748 -139462372 - Lx9 LINE L1 -143 7501 7477 2 708 189 0 0 0 chr4 16167748 16167769 -139462351 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 708 397 299 298 20 chr4 16167769 16168090 -139462030 - Lx9 LINE L1 -168 7476 7064 2 708 397 279 62 25 chr4 16168431 16168593 -139461527 - MER58A DNA MER1_type -5 219 52 2 708 361 254 24 41 chr4 16168949 16169072 -139461048 + MER63D DNA AcHobo 396 516 -545 2 708 15636 161 38 31 chr4 16169461 16172772 -139457348 + Lx5 LINE L1 874 4188 -1689 2 708 270 73 0 0 chr4 16172772 16172813 -139457307 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 2 708 15636 158 37 32 chr4 16172813 16172896 -139457224 + Lx5 LINE L1 4189 4284 -1593 2 708 180 0 0 0 chr4 16172896 16172916 -139457204 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 708 15636 158 37 32 chr4 16172916 16173202 -139456918 + Lx5 LINE L1 4285 4585 -1292 2 708 2372 69 114 6 chr4 16174091 16174443 -139455677 - RLTR10 LTR ERVK 0 390 1 2 708 14136 16 5 1 chr4 16174445 16176120 -139454000 - RLTR10-int LTR ERVK -3 1984 302 2 708 2366 66 119 11 chr4 16176120 16176472 -139453648 - RLTR10 LTR ERVK 0 390 1 2 708 503 31 15 0 chr4 16177067 16177132 -139452988 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2 708 252 77 0 0 chr4 16177382 16177421 -139452699 + (A)n Simple_repeat Simple_repeat 1 39 0 2 708 5473 181 76 20 chr4 16177433 16179402 -139450718 + Lx5 LINE L1 4920 7042 -8 2 708 595 275 41 6 chr4 16180985 16181157 -139448963 + B3A SINE B2 3 180 -18 2 708 342 0 0 0 chr4 16181159 16181197 -139448923 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 708 216 0 0 0 chr4 16181652 16181676 -139448444 + (A)n Simple_repeat Simple_repeat 1 24 0 2 708 250 161 0 94 chr4 16182759 16182855 -139447265 + Lx4A LINE L1 6963 7049 -9 2 708 251 355 0 24 chr4 16183050 16183141 -139446979 + ID4_ SINE ID 4 92 -60 2 708 359 328 41 55 chr4 16183869 16184014 -139446106 - MER5A DNA MER1_type -2 187 45 2 708 26 30 0 0 chr4 16184154 16184187 -139445933 + AT_rich Low_complexity Low_complexity 1 33 0 2 708 1448 320 69 55 chr4 16184407 16185177 -139444943 + MTE-int LTR MaLR 741 1521 -59 2 708 240 299 70 127 chr4 16185175 16185547 -139444573 + MTEa LTR MaLR 7 366 -13 2 708 1703 233 63 24 chr4 16186061 16186522 -139443598 + RLTR20B1 LTR ERVK 70 548 -15 2 708 5706 88 45 5 chr4 16186786 16187601 -139442519 - Lx3_Mus LINE L1 -4 7005 6158 2 708 749 385 33 38 chr4 16187774 16188166 -139441954 - LTR16B2 LTR ERVL -2 460 71 2 708 912 202 250 15 chr4 16188171 16188503 -139441617 + Lx6 LINE L1 1872 2281 -3599 2 708 3974 136 3 0 chr4 16188506 16189101 -139441019 - Lx2 LINE L1 -8 6989 6393 2 708 1816 90 10 35 chr4 16189101 16189390 -139440730 + Lx2 LINE L1 5624 5905 -1092 2 708 866 140 0 0 chr4 16189389 16189532 -139440588 + Lx6 LINE L1 2250 2392 -3485 2 708 3616 183 348 19 chr4 16189518 16190873 -139439247 + Lx6 LINE L1 3804 5603 -274 2 708 970 283 40 55 chr4 16190868 16191341 -139438779 + Lx6 LINE L1 5880 6374 -676 2 708 1069 242 148 35 chr4 16191332 16191860 -139438260 + Lx6 LINE L1 6479 7434 -26 2 708 399 222 72 86 chr4 16191887 16192109 -139438011 - L1_Rod LINE L1 -3099 2748 2530 2 708 2767 215 61 137 chr4 16192289 16193370 -139436750 + RMER1B Other Other 65 1063 -3 2 708 1017 245 68 37 chr4 16193417 16193799 -139436321 - L1_Rod LINE L1 -3369 2478 2085 2 708 396 59 0 0 chr4 16194401 16194452 -139435668 + (CAT)n Simple_repeat Simple_repeat 2 52 0 2 708 180 0 0 0 chr4 16194453 16194473 -139435647 + (CAG)n Simple_repeat Simple_repeat 3 22 0 2 708 1146 97 0 0 chr4 16194473 16194648 -139435472 + (GGA)n Simple_repeat Simple_repeat 3 177 0 2 708 333 307 146 75 chr4 16194838 16195167 -139434953 - MLT1E1A LTR MaLR -199 481 8 2 708 4257 77 11 20 chr4 16195293 16195927 -139434193 - L1Md_F2 LINE L1 -14 6568 5941 2 708 1060 81 0 12 chr4 16195927 16196090 -139434030 - L1_Mm LINE L1 -583 5300 5140 3 708 6672 67 3 1 chr4 16196078 16197069 -139433051 - L1Md_F2 LINE L1 -646 5936 4945 2 708 5765 69 0 14 chr4 16197069 16197829 -139432291 + L1Md_F2 LINE L1 5821 6569 -13 3 708 25646 118 9 14 chr4 16197843 16202977 -139427143 + L1_Mus2 LINE L1 1442 6546 -20 3 708 4528 180 57 16 chr4 16202978 16203981 -139426139 + L1Md_F LINE L1 87 1130 -5389 3 708 459 269 12 29 chr4 16204022 16204194 -139425926 - L1Md_F LINE L1 -5778 741 573 3 708 325 359 77 30 chr4 16204502 16204841 -139425279 - L1ME3B LINE L1 -352 5888 5534 3 708 432 0 0 0 chr4 16205548 16205596 -139424524 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 3 708 860 269 0 0 chr4 16206225 16206392 -139423728 + B3A SINE B2 5 171 -27 3 708 1871 253 142 21 chr4 16206817 16207423 -139422697 - Lx6 LINE L1 0 7460 6782 3 708 23 33 0 0 chr4 16207499 16207529 -139422591 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 5261 93 42 17 chr4 16207609 16208393 -139421727 - L1_Mus3 LINE L1 -9 6629 5826 3 708 312 234 113 35 chr4 16209246 16209388 -139420732 + L1M2 LINE L1 5607 5759 -532 3 708 348 64 0 0 chr4 16209405 16209452 -139420668 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 708 257 218 13 0 chr4 16209463 16209541 -139420579 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 708 589 221 26 10 chr4 16210207 16210362 -139419758 - MTD LTR MaLR -22 397 248 3 708 471 360 39 46 chr4 16210391 16210650 -139419470 - MTD LTR MaLR -148 271 15 3 708 436 279 88 19 chr4 16210824 16211134 -139418986 + L1MA4 LINE L1 5586 5929 -371 3 708 231 204 0 0 chr4 16211134 16211188 -139418932 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 708 378 0 0 0 chr4 16211657 16211699 -139418421 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 708 470 324 72 28 chr4 16212269 16212450 -139417670 - MLT1A0 LTR MaLR -102 263 75 3 708 278 291 67 59 chr4 16212452 16212587 -139417533 + Lx8 LINE L1 7157 7292 -181 3 708 437 272 58 7 chr4 16212625 16212762 -139417358 + BC1_Mm scRNA scRNA 1 144 -8 3 708 459 289 15 45 chr4 16212776 16212910 -139417210 + RSINE1 SINE B4 12 141 -24 3 708 216 333 85 36 chr4 16213275 16213440 -139416680 - L2a LINE L2 -10 3416 3244 3 708 192 135 0 0 chr4 16213584 16213621 -139416499 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 708 408 286 0 25 chr4 16213632 16213754 -139416366 + PB1D7 SINE Alu 1 119 -1 3 708 541 273 70 52 chr4 16213892 16214261 -139415859 - Lx6 LINE L1 -1372 6088 5690 3 708 7865 121 44 40 chr4 16214318 16215194 -139414926 - Lx2 LINE L1 0 6997 6131 3 708 1111 101 0 13 chr4 16215194 16215344 -139414776 - B1_Mus1 SINE Alu 0 148 1 3 708 7865 125 44 36 chr4 16215344 16215931 -139414189 - Lx2 LINE L1 -867 6130 5528 3 708 4459 154 25 5 chr4 16215933 16216766 -139413354 - Lx2 LINE L1 -851 5032 4183 3 708 204 83 56 0 chr4 16217543 16217579 -139412541 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 708 226 224 0 0 chr4 16217588 16217637 -139412483 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 708 3943 201 88 5 chr4 16217747 16218743 -139411377 - Lx9 LINE L1 -2 7642 6564 3 708 336 356 13 13 chr4 16219431 16219582 -139410538 + MIRb SINE MIR 51 201 -67 3 708 564 15 0 0 chr4 16219587 16219652 -139410468 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 708 1768 282 35 13 chr4 16219729 16220357 -139409763 - Lx9 LINE L1 -530 7114 6473 3 708 226 296 14 0 chr4 16220364 16220435 -139409685 + Lx9 LINE L1 7123 7194 -450 3 708 1621 207 57 11 chr4 16220485 16220851 -139409269 - Lx5 LINE L1 -3 7047 6665 3 708 5564 28 0 0 chr4 16220882 16221524 -139408596 - L1Md_T LINE L1 0 6582 5941 3 708 634 37 0 0 chr4 16221524 16221606 -139408514 + L1Md_T LINE L1 5855 5936 -646 3 708 951 282 85 67 chr4 16221603 16222069 -139408051 - L1M2 LINE L1 -1212 4931 4447 3 708 4733 147 26 10 chr4 16222069 16222840 -139407280 - Lx4A LINE L1 -12 7046 6264 3 708 1972 282 68 54 chr4 16222840 16223611 -139406509 - L1M2 LINE L1 -1697 4446 3675 3 708 1768 197 56 28 chr4 16223611 16224040 -139406080 - BGLII_B LTR ERVK 0 441 1 3 708 1972 282 68 54 chr4 16224040 16224193 -139405927 - L1M2 LINE L1 -2469 3674 3520 3 708 180 111 0 0 chr4 16226014 16226041 -139404079 + (A)n Simple_repeat Simple_repeat 1 27 0 3 708 402 21 0 0 chr4 16226217 16226264 -139403856 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 708 498 294 119 19 chr4 16226296 16226556 -139403564 - B4A SINE B4 -6 286 1 3 708 396 0 0 0 chr4 16228444 16228488 -139401632 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 708 384 22 0 0 chr4 16228488 16228533 -139401587 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 708 532 299 0 26 chr4 16228553 16228704 -139401416 - RSINE1 SINE B4 -14 151 5 3 708 271 245 0 0 chr4 16228918 16228967 -139401153 + MER5A DNA MER1_type 3 51 -138 3 708 363 199 62 39 chr4 16229164 16229342 -139400778 + Lx9 LINE L1 7459 7640 -4 3 708 370 315 52 46 chr4 16229679 16229832 -139400288 - Helitron3Na_Mam RC Helitron -69 417 264 3 708 38986 15 2 1 chr4 16230154 16237346 -139392774 - L1Md_A LINE L1 0 6582 1 3 708 270 0 0 0 chr4 16237838 16237868 -139392252 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 708 1619 27 11 0 chr4 16238038 16238225 -139391895 + B2_Mm1a SINE B2 2 190 -3 3 708 794 257 102 9 chr4 16238246 16238462 -139391658 + ORR1D2 LTR MaLR 135 370 0 3 708 2501 288 37 27 chr4 16238565 16239405 -139390715 - Lx8 LINE L1 -239 7234 6387 3 708 787 233 0 0 chr4 16239464 16239614 -139390506 - B1_Mur4 SINE Alu 0 150 1 3 708 1531 286 12 35 chr4 16241087 16241848 -139388272 - Lx6 LINE L1 -67 7393 6455 3 708 1792 267 55 9 chr4 16241838 16242383 -139387737 + Lx5 LINE L1 5853 6422 -628 3 708 236 292 0 14 chr4 16243440 16243513 -139386607 + MTEb LTR MaLR 287 358 -21 3 708 666 200 78 7 chr4 16243687 16243828 -139386292 - B3 SINE B2 -11 205 55 3 708 681 214 97 0 chr4 16243827 16243981 -139386139 - B3 SINE B2 -47 169 1 3 708 560 305 92 33 chr4 16244067 16244372 -139385748 + Lx9 LINE L1 7051 7373 -271 3 708 606 288 27 11 chr4 16244573 16244759 -139385361 + B3A SINE B2 3 191 -7 3 708 456 19 0 0 chr4 16245778 16245831 -139384289 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 708 396 0 0 0 chr4 16245831 16245874 -139384246 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 708 348 304 47 6 chr4 16246279 16246451 -139383669 + L1M2 LINE L1 5639 5817 -483 3 708 467 290 13 0 chr4 16246451 16246606 -139383514 + Lx6 LINE L1 7278 7434 -26 3 708 36287 14 0 7 chr4 16246940 16252109 -139378011 + L1Md_A LINE L1 462 5586 -297 3 88 8689 20 1 0 chr4 16252109 16253130 -139376990 + L1Md_A LINE L1 5587 6582 0 3 709 628 312 64 20 chr4 16253530 16253969 -139376151 - L1M2 LINE L1 -894 5249 4792 3 709 512 252 134 14 chr4 16253967 16254176 -139375944 + L1M2 LINE L1 5403 5636 -655 3 709 285 220 174 11 chr4 16254183 16254275 -139375845 + B3 SINE B2 110 216 0 3 709 385 156 17 60 chr4 16255405 16255521 -139374599 - L1Md_F2 LINE L1 0 6582 6472 3 709 1088 227 86 0 chr4 16256447 16256795 -139373325 + Lx9 LINE L1 7265 7642 -2 3 709 434 283 9 0 chr4 16256809 16256915 -139373205 + PB1D10 SINE Alu 1 107 -10 3 709 12399 100 41 107 chr4 16257227 16261028 -139369092 - Lx2 LINE L1 0 6997 3446 3 709 32795 75 2 1 chr4 16261022 16267200 -139362920 - L1Md_F2 LINE L1 -3 6579 392 3 709 245 323 10 59 chr4 16267244 16267346 -139362774 - URR1B DNA MER1_type -127 98 2 3 709 640 290 199 18 chr4 16267346 16267620 -139362500 + MER34A1 LTR ERV1 35 359 -228 3 709 3965 102 53 17 chr4 16267711 16268057 -139362063 - Lx3_Mus LINE L1 -13 6996 6639 3 709 3875 36 6 0 chr4 16268057 16268526 -139361594 - L1Md_F2 LINE L1 0 6582 6111 3 709 3965 102 53 17 chr4 16268526 16268839 -139361281 - Lx3_Mus LINE L1 -371 6638 6314 3 709 20740 91 6 190 chr4 16268859 16271098 -139359022 - L1_Mur1 LINE L1 0 5886 3664 3 709 3598 66 0 15 chr4 16271098 16271578 -139358542 - L1Md_F2 LINE L1 0 6582 6110 3 709 20740 91 6 190 chr4 16271578 16273640 -139356480 - L1_Mur1 LINE L1 -2223 3663 2480 3 709 437 0 0 19 chr4 16273640 16273694 -139356426 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 3 709 782 120 88 0 chr4 16273694 16273819 -139356301 - B1_Mus1 SINE Alu -12 136 1 3 709 20740 91 6 190 chr4 16273819 16274416 -139355704 - L1_Mur1 LINE L1 -3407 2479 1887 3 709 1848 171 86 24 chr4 16274431 16274943 -139355177 - L1_Mur1 LINE L1 -5851 1133 208 3 709 279 0 0 0 chr4 16275046 16275077 -139355043 + (T)n Simple_repeat Simple_repeat 1 31 0 3 709 299 278 6 47 chr4 16275077 16275259 -139354861 - L1_Mur1 LINE L1 -6615 369 32 3 709 4613 225 52 3 chr4 16276224 16277390 -139352730 - Lx9 LINE L1 -4 7640 6419 3 709 1008 226 60 24 chr4 16277498 16277844 -139352276 - Lx9 LINE L1 -1594 6050 5703 3 709 26 0 0 0 chr4 16278272 16278298 -139351822 + AT_rich Low_complexity Low_complexity 1 26 0 3 709 6165 70 6 2 chr4 16278298 16279095 -139351025 + L1_Mus1 LINE L1 5768 6567 0 3 709 685 212 19 0 chr4 16279131 16279271 -139350849 - B1_Mur4 SINE Alu -2 148 1 3 709 257 274 73 88 chr4 16279414 16279550 -139350570 + L1VL2 LINE L1 284 417 -5918 3 709 11590 120 22 6 chr4 16279534 16281869 -139348251 + L1VL4 LINE L1 499 2869 -690 3 709 220 257 223 27 chr4 16282123 16282235 -139347885 + MIR SINE MIR 129 262 0 3 709 191 312 159 53 chr4 16283349 16283481 -139346639 - MIRc SINE MIR -109 159 14 3 709 2603 73 60 3 chr4 16283537 16283907 -139346213 - L1_Mus2 LINE L1 0 6566 6176 3 709 216 130 0 0 chr4 16284555 16284601 -139345519 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 709 391 255 50 43 chr4 16285956 16286228 -139343892 + L1MA6 LINE L1 5961 6244 -56 3 709 26 30 0 0 chr4 16286248 16286281 -139343839 + AT_rich Low_complexity Low_complexity 1 33 0 3 709 13666 71 1 1 chr4 16286354 16288944 -139341176 - L1Md_F2 LINE L1 -14 6568 3979 3 709 2975 26 2 140 chr4 16288944 16289394 -139340726 + RLTR10 LTR ERVK 1 388 -2 3 709 12905 28 3 14 chr4 16289443 16291512 -139338608 + RLTR10-int LTR ERVK 13 1986 -1 3 709 2730 26 2 224 chr4 16291512 16292011 -139338109 + RLTR10 LTR ERVK 1 388 -2 3 709 19026 85 1 31 chr4 16292013 16295489 -139334631 - L1Md_F2 LINE L1 -1899 3984 217 3 709 21 82 0 0 chr4 16295528 16295577 -139334543 + AT_rich Low_complexity Low_complexity 1 49 0 3 709 1996 230 121 36 chr4 16295771 16296439 -139333681 - Lx7 LINE L1 -4 7692 6968 3 709 1549 262 120 17 chr4 16296931 16297533 -139332587 - Tigger10 DNA Tigger -512 1331 668 3 709 26 0 0 0 chr4 16298293 16298319 -139331801 + AT_rich Low_complexity Low_complexity 1 26 0 4 709 834 319 51 97 chr4 16298821 16299066 -139331054 + MER34A1 LTR ERV1 57 298 -289 4 709 804 248 9 46 chr4 16299066 16299282 -139330838 + ID_B1 SINE B4 3 210 -14 4 709 834 319 51 97 chr4 16299282 16299509 -139330611 + MER34A1 LTR ERV1 299 507 -80 4 709 228 406 23 0 chr4 16299569 16299702 -139330418 - MLT1K LTR MaLR -379 216 81 4 709 25587 83 8 1 chr4 16300003 16303841 -139326279 + L1Md_A LINE L1 1112 4962 -921 4 709 1147 107 6 17 chr4 16303841 16304021 -139326099 + L1Md_F2 LINE L1 6394 6571 -11 4 709 247 25 24 24 chr4 16304586 16304627 -139325493 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 709 522 0 0 0 chr4 16304630 16304688 -139325432 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 709 287 338 98 13 chr4 16304766 16304919 -139325201 - Lx5 LINE L1 -18 7032 6867 4 709 506 256 88 67 chr4 16305239 16305432 -139324688 - B3A SINE B2 0 198 2 4 709 6042 90 7 7 chr4 16306833 16307682 -139322438 + L1_Mus3 LINE L1 5782 6630 -8 4 709 1288 254 24 30 chr4 16308323 16308692 -139321428 + ORR1D2 LTR MaLR 1 367 -3 4 709 246 247 27 118 chr4 16308693 16308803 -139321317 + MIR SINE MIR 150 249 -13 4 709 225 267 120 0 chr4 16308949 16309024 -139321096 - MIRc SINE MIR -142 126 43 4 709 264 327 48 55 chr4 16311767 16311932 -139318188 + MIRb SINE MIR 105 268 0 4 709 264 200 79 13 chr4 16312604 16312680 -139317440 - ID4_ SINE ID -1 82 2 4 709 717 225 7 0 chr4 16312691 16312829 -139317291 - B1_Mur1 SINE Alu -1 148 10 4 709 245 0 86 0 chr4 16312839 16312874 -139317246 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 709 181 353 66 16 chr4 16313392 16313513 -139316607 - MIR SINE MIR -73 189 63 4 709 4206 99 118 103 chr4 16313752 16314628 -139315492 - RMER17D LTR ERVK 0 889 1 4 709 251 277 134 0 chr4 16314948 16315060 -139315060 - MIRm SINE MIR -95 181 55 4 709 249 304 36 132 chr4 16315490 16315657 -139314463 - MLT1N2 LTR MaLR -331 231 81 4 709 793 206 76 52 chr4 16316375 16316585 -139313535 - B3 SINE B2 0 216 2 4 709 208 178 22 0 chr4 16317486 16317531 -139312589 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 709 183 179 65 97 chr4 16318993 16319055 -139311065 - L4 LINE RTE -1765 264 205 4 709 3218 204 16 10 chr4 16319255 16319935 -139310185 - Lx2B LINE L1 -13 6987 6304 4 709 2409 46 43 0 chr4 16319922 16320224 -139309896 + L1_Mus1 LINE L1 6253 6567 0 4 709 2226 194 17 0 chr4 16320237 16320702 -139309418 - Lx2B LINE L1 -693 6307 5835 4 709 654 100 0 0 chr4 16320703 16320803 -139309317 - Lx5 LINE L1 -1354 5696 5597 4 709 3622 166 25 1 chr4 16320814 16321118 -139309002 - MusHAL1 LINE L1 -800 1912 1605 4 709 201 39 0 0 chr4 16321118 16321144 -139308976 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 709 3622 166 25 1 chr4 16321144 16321558 -139308562 - MusHAL1 LINE L1 -1108 1604 1177 4 709 712 102 8 38 chr4 16321566 16321699 -139308421 - Lx LINE L1 -5 6649 6521 4 709 297 0 0 0 chr4 16321890 16321923 -139308197 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 709 234 250 0 0 chr4 16322148 16322224 -139307896 - MER53 DNA hAT -101 92 17 4 709 1141 284 92 75 chr4 16322231 16323278 -139306842 - L1MA6 LINE L1 -22 6278 5214 4 709 402 285 119 22 chr4 16323343 16323655 -139306465 - L1MA6 LINE L1 -1098 5045 4704 4 709 1905 5 0 0 chr4 16324070 16324291 -139305829 - L1_Mm LINE L1 -851 5032 4812 4 709 3812 75 0 0 chr4 16324291 16324785 -139305335 + L1Md_T LINE L1 6089 6582 0 4 709 28 71 0 0 chr4 16324800 16324856 -139305264 + AT_rich Low_complexity Low_complexity 1 56 0 4 709 573 349 90 35 chr4 16327140 16327508 -139302612 - LTR52 LTR ERVL -1 420 33 4 709 26 50 0 0 chr4 16328500 16328540 -139301580 + AT_rich Low_complexity Low_complexity 1 40 0 4 709 345 24 0 0 chr4 16328576 16328618 -139301502 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 709 469 350 0 47 chr4 16328619 16328790 -139301330 - RSINE1 SINE B4 -1 164 2 4 709 191 322 50 17 chr4 16330601 16330661 -139299459 - L2c LINE L2 -44 3343 3282 4 709 372 321 64 39 chr4 16331535 16331739 -139298381 + ID_B1 SINE B4 2 210 -14 4 709 1543 222 47 6 chr4 16331748 16332111 -139298009 - ORR1C1 LTR MaLR 0 378 1 4 709 393 22 0 0 chr4 16332257 16332303 -139297817 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 709 493 62 0 0 chr4 16332328 16332393 -139297727 + B1_Mm SINE Alu 81 145 -2 4 709 216 97 0 0 chr4 16332395 16332426 -139297694 + (A)n Simple_repeat Simple_repeat 1 31 0 4 709 1247 279 71 37 chr4 16332433 16332996 -139297124 - Lx8 LINE L1 -153 7320 6739 4 709 5022 104 0 1 chr4 16333054 16333758 -139296362 - L1_Mus4 LINE L1 -7 6629 5927 4 709 4138 118 1 6 chr4 16333758 16334498 -139295622 + L1_Mus4 LINE L1 5197 5934 -702 4 709 1324 317 3 5 chr4 16334511 16334895 -139295225 - Lx8 LINE L1 -793 6680 6298 4 709 3855 161 32 49 chr4 16334896 16335967 -139294153 + RLTR13D1 LTR ERVK 1 1023 0 4 709 3806 238 74 56 chr4 16336242 16337285 -139292835 + RMER1B Other Other 1 1062 -4 4 709 327 244 20 28 chr4 16337282 16337389 -139292731 - Lx8 LINE L1 -1272 6201 6099 4 709 1828 226 32 17 chr4 16337640 16338045 -139292075 - MTD LTR MaLR -8 411 1 4 709 543 327 7 0 chr4 16338107 16338257 -139291863 - Lx8 LINE L1 -187 7286 7136 4 709 229 258 43 43 chr4 16338410 16338479 -139291641 + RMER13A LTR ERVK 56 124 -736 4 709 1325 202 66 6 chr4 16339193 16339541 -139290579 - Lx9 LINE L1 -7 7637 7269 4 709 206 362 79 26 chr4 16339644 16339971 -139290149 + L2c LINE L2 3044 3387 0 4 709 229 283 0 32 chr4 16340581 16340643 -139289477 + PB1D10 SINE Alu 23 82 -35 4 709 244 276 0 19 chr4 16340827 16340934 -139289186 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 4 709 491 335 59 15 chr4 16342393 16342596 -139287524 + MIR SINE MIR 2 213 -49 4 709 1503 267 159 31 chr4 16344137 16344780 -139285340 + RCHARR1 DNA MER1_type 8 733 -241 4 709 262 286 78 72 chr4 16344780 16344946 -139285174 - RLTR25A LTR ERVK 0 1103 937 4 709 432 0 0 0 chr4 16345642 16345690 -139284430 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 709 210 37 0 0 chr4 16345820 16345847 -139284273 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 709 1559 194 48 18 chr4 16345950 16346280 -139283840 - Lx4B LINE L1 -1 7057 6718 4 709 33 0 0 0 chr4 16346705 16346738 -139283382 + AT_rich Low_complexity Low_complexity 1 33 0 4 709 3050 26 0 0 chr4 16349484 16349830 -139280290 + ORR1A0 LTR MaLR 1 346 0 4 709 678 185 0 52 chr4 16349934 16350088 -139280032 + RMER1C Other Other 1197 1342 0 4 709 585 0 0 0 chr4 16350275 16350340 -139279780 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 709 1929 86 44 20 chr4 16350693 16350990 -139279130 - L1_Mus3 LINE L1 -6 6632 6329 4 709 3512 59 0 0 chr4 16351035 16351477 -139278643 + L1Md_F2 LINE L1 5145 5586 -297 4 709 7443 70 7 1 chr4 16351478 16352453 -139277667 + L1Md_F2 LINE L1 5588 6568 -14 4 709 204 154 0 25 chr4 16353023 16353063 -139277057 + T-rich Low_complexity Low_complexity 2 40 0 4 709 963 111 122 39 chr4 16353445 16353627 -139276493 - L1Md_A LINE L1 -3 6581 6364 4 709 6026 236 56 54 chr4 16353910 16354355 -139275765 - Lx6 LINE L1 -259 7201 6752 4 709 423 0 0 0 chr4 16354355 16354402 -139275718 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 709 6026 236 56 54 chr4 16354402 16354492 -139275628 - Lx6 LINE L1 -709 6751 6682 4 709 1852 199 62 25 chr4 16354492 16354898 -139275222 + MTC LTR MaLR 1 421 0 4 709 6026 226 52 45 chr4 16354898 16356074 -139274046 - Lx6 LINE L1 -779 6681 5483 4 709 2298 77 13 13 chr4 16356055 16356076 -139274044 + L1Md_F2 LINE L1 6062 6080 -502 4 709 1431 43 0 11 chr4 16356076 16356265 -139273855 - L1Md_F3 LINE L1 -14 6570 6384 4 709 2298 77 13 13 chr4 16356265 16356558 -139273562 + L1Md_F3 LINE L1 6081 6376 -206 4 709 2614 202 48 19 chr4 16356536 16357175 -139272945 - Lx6 LINE L1 -385 5495 4838 4 709 2652 158 46 2 chr4 16357171 16357700 -139272420 - Lx5 LINE L1 -1108 5942 5388 4 709 4091 196 153 11 chr4 16357699 16358654 -139271466 + Lx5 LINE L1 5958 7047 -3 4 709 21 71 0 0 chr4 16358673 16358715 -139271405 + AT_rich Low_complexity Low_complexity 1 42 0 4 709 347 220 34 76 chr4 16358863 16358981 -139271139 - Lx6 LINE L1 -1061 4819 4707 4 709 1800 140 17 70 chr4 16358983 16359328 -139270792 + ORR1A4 LTR MaLR 3 329 0 4 709 3629 194 10 49 chr4 16359328 16360102 -139270018 + ORR1A4-int LTR MaLR 1 744 -1219 4 709 225 278 74 53 chr4 16360017 16360112 -139270008 + MT2B2 LTR ERVL 187 283 -301 4 709 597 109 0 0 chr4 16360126 16360218 -139269902 - L1_Mus2 LINE L1 -52 6514 6423 4 709 1446 92 0 0 chr4 16360218 16360425 -139269695 - L1Md_F2 LINE L1 -1 6581 6375 4 709 888 37 0 0 chr4 16360425 16360534 -139269586 - IAPLTR2_Mm LTR ERVK -1 474 366 4 709 520 81 40 0 chr4 16360538 16360612 -139269508 - IAPLTR2_Mm LTR ERVK -250 77 1 4 709 5981 47 3 16 chr4 16360614 16361368 -139268752 - IAPEz-int LTR ERVK -2 6479 5736 4 709 2174 65 11 0 chr4 16361367 16361642 -139268478 - IAPEz-int LTR ERVK -4845 1636 1359 4 709 3459 67 7 16 chr4 16361642 16362217 -139267903 - IAPEz-int LTR ERVK -5819 662 168 4 709 260 283 0 0 chr4 16362217 16362270 -139267850 - RLTR27 LTR ERVK -34 275 223 4 709 915 143 48 84 chr4 16362270 16362498 -139267622 - IAPEz-int LTR ERVK -7329 252 3 4 709 2441 116 127 7 chr4 16362500 16362924 -139267196 - IAPLTR2_Mm LTR ERVK 0 475 1 4 709 33732 75 7 1 chr4 16362924 16368744 -139261376 - L1Md_F2 LINE L1 -201 6381 522 4 709 358 277 97 19 chr4 16368744 16368847 -139261273 + B1_Mus2 SINE Alu 2 112 -35 4 709 668 156 0 35 chr4 16368757 16368842 -139261278 + MT2B LTR ERVL 179 259 -342 4 709 447 252 113 0 chr4 16368842 16368957 -139261163 + B1_Mus2 SINE Alu 3 130 -19 4 709 8518 183 23 39 chr4 16368965 16370935 -139259185 - L1_Mur3 LINE L1 -1171 4709 2772 4 709 1295 266 27 8 chr4 16371143 16371515 -139258605 - MTE2a LTR MaLR 0 379 1 4 709 1563 212 30 18 chr4 16371620 16371951 -139258169 - Lx5 LINE L1 -82 6968 6634 4 709 707 249 94 107 chr4 16372449 16372862 -139257258 + Lx9 LINE L1 7235 7642 -2 4 709 1195 164 0 0 chr4 16372892 16373111 -139257009 - L1_Mur2 LINE L1 -1419 4458 4240 4 709 4831 137 8 11 chr4 16373111 16373902 -139256218 + Lx2B LINE L1 6211 6998 -2 4 709 342 45 0 0 chr4 16375992 16376036 -139254084 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 709 23579 126 57 44 chr4 16376137 16378094 -139252026 - L1_Mus3 LINE L1 0 6638 4601 4 709 5381 36 0 9 chr4 16378094 16378745 -139251375 - L1Md_T LINE L1 0 6582 5938 4 709 23579 147 23 84 chr4 16378745 16380123 -139249997 - L1_Mus3 LINE L1 -1283 4600 3484 4 709 316 0 0 43 chr4 16380123 16380169 -139249951 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 709 23579 159 22 70 chr4 16380169 16383064 -139247056 - L1_Mus3 LINE L1 -2400 3483 634 4 709 330 350 70 38 chr4 16383342 16383562 -139246558 + ERVL-E-int LTR ERVL 3826 4056 -1611 4 709 405 0 0 0 chr4 16383562 16383607 -139246513 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 709 330 350 70 38 chr4 16383607 16383757 -139246363 + ERVL-E-int LTR ERVL 4057 4208 -1459 4 710 584 354 66 40 chr4 16384178 16384558 -139245562 - LTR40a LTR ERVL -9 510 121 5 710 3872 216 45 34 chr4 16384802 16385689 -139244431 + Lx9 LINE L1 6537 7433 -211 5 710 3653 237 60 16 chr4 16385696 16386547 -139243573 - Lx6 LINE L1 -2 7458 6571 5 710 2205 214 31 37 chr4 16386542 16387260 -139242860 - Lx6 LINE L1 -1286 6174 5458 5 710 5941 92 6 1 chr4 16387252 16388443 -139241677 - L1_Mus1 LINE L1 -368 6199 4999 5 710 1567 221 70 24 chr4 16388439 16388785 -139241335 - L1_Mur3 LINE L1 -3023 2857 2494 5 710 294 29 0 0 chr4 16388785 16388820 -139241300 + (CTATA)n Simple_repeat Simple_repeat 1 35 0 5 710 1567 221 70 24 chr4 16388820 16388928 -139241192 - L1_Mur3 LINE L1 -3387 2493 2383 5 710 428 199 233 12 chr4 16389067 16389230 -139240890 - Lx9 LINE L1 -7 7637 7439 5 710 277 235 12 0 chr4 16389253 16389334 -139240786 + L1_Mur3 LINE L1 2488 2569 -3311 5 710 662 270 10 50 chr4 16389390 16389589 -139240531 + Lx9 LINE L1 7222 7412 -232 5 710 849 29 0 0 chr4 16389598 16389702 -139240418 - B1_Mm SINE Alu -2 145 42 5 710 274 313 15 38 chr4 16389765 16389898 -139240222 - Lx8 LINE L1 -1221 6252 6123 5 710 739 119 8 8 chr4 16390002 16390129 -139239991 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 5 710 25 0 0 0 chr4 16390410 16390435 -139239685 + AT_rich Low_complexity Low_complexity 1 25 0 5 710 291 115 0 0 chr4 16390437 16390489 -139239631 - Lx9 LINE L1 -1 7643 7592 5 710 4323 81 28 13 chr4 16390509 16391119 -139239001 - L1_Mus1 LINE L1 0 6567 5949 5 710 21 0 0 0 chr4 16391538 16391559 -139238561 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 482 333 85 19 chr4 16391701 16391961 -139238159 - L4 LINE RTE -122 1907 1631 5 710 216 200 0 0 chr4 16392124 16392179 -139237941 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 710 500 277 14 110 chr4 16392207 16392353 -139237767 - B3A SINE B2 -16 182 51 5 710 937 246 76 0 chr4 16392358 16392647 -139237473 - L1MA6 LINE L1 0 6300 5990 5 710 675 288 97 11 chr4 16392716 16393440 -139236680 - L1MA6 LINE L1 -513 5784 4958 5 710 317 283 71 11 chr4 16393449 16393631 -139236489 - L1MA6 LINE L1 -1488 4655 4463 5 710 431 174 212 13 chr4 16393703 16393854 -139236266 + Lx7 LINE L1 7516 7696 0 5 710 2015 238 129 107 chr4 16393922 16394779 -139235341 - RMER17B LTR ERVK -15 943 138 5 710 194 0 39 0 chr4 16394779 16394805 -139235315 + (AGGGGG)n Simple_repeat Simple_repeat 3 29 0 5 710 774 242 3990 92 chr4 16394805 16394819 -139235301 - RMER17B LTR ERVK -769 137 126 5 710 813 65 0 0 chr4 16394819 16394927 -139235193 + (GAGAA)n Simple_repeat Simple_repeat 1 108 0 5 710 596 255 37 16 chr4 16394927 16395103 -139235017 - RMER17C LTR ERVK -229 181 2 5 710 905 277 59 8 chr4 16395103 16395338 -139234782 + MTD LTR MaLR 158 404 -15 5 710 1163 61 0 0 chr4 16395371 16395518 -139234602 + B1_Mus2 SINE Alu 1 147 0 5 710 33 0 0 0 chr4 16395518 16395551 -139234569 + AT_rich Low_complexity Low_complexity 1 33 0 5 710 530 313 39 33 chr4 16395552 16395889 -139234231 - L1_Rod LINE L1 -51 5796 5458 5 710 239 203 47 0 chr4 16395897 16395961 -139234159 - Lx6 LINE L1 -19 7441 7375 5 710 225 0 0 0 chr4 16396049 16396074 -139234046 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 710 227 143 41 0 chr4 16396134 16396183 -139233937 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 5 710 1048 193 22 73 chr4 16396331 16396605 -139233515 - Lx7 LINE L1 -73 7623 7364 5 710 34 42 0 0 chr4 16396693 16396741 -139233379 + AT_rich Low_complexity Low_complexity 1 48 0 5 710 229 318 55 33 chr4 16396863 16396954 -139233166 - Lx8 LINE L1 -252 7221 7129 5 710 6352 130 41 25 chr4 16397029 16398560 -139231560 - Lx LINE L1 -2 6652 5095 5 710 315 0 0 0 chr4 16398561 16398596 -139231524 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 710 3937 95 0 0 chr4 16398610 16399170 -139230950 - L1VL2 LINE L1 -1287 2328 1769 5 710 4175 47 0 0 chr4 16399182 16399690 -139230430 - L1Md_T LINE L1 -420 6162 5655 5 710 3033 42 16 5 chr4 16399690 16400077 -139230043 + L1Md_F3 LINE L1 6192 6582 -2 5 710 5590 113 31 13 chr4 16400125 16401738 -139228382 - L1VL2 LINE L1 -1850 1765 126 5 710 633 326 0 0 chr4 16402671 16402818 -139227302 + B1_Mur2 SINE Alu 3 149 0 5 710 932 81 73 0 chr4 16402872 16403008 -139227112 + B1_Mus1 SINE Alu 2 147 -1 5 710 1285 250 34 3 chr4 16403240 16403597 -139226523 + ORR1D2 LTR MaLR 1 368 -2 5 710 238 196 64 75 chr4 16404972 16405066 -139225054 - Lx8 LINE L1 -29 7444 7352 5 710 743 104 13 34 chr4 16405105 16405254 -139224866 + Lx2 LINE L1 6852 6997 0 5 710 189 0 0 0 chr4 16405856 16405877 -139224243 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 5 710 450 0 0 0 chr4 16405878 16405928 -139224192 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 710 2567 220 150 27 chr4 16405929 16406721 -139223399 - Lx5 LINE L1 -50 7000 6100 5 710 6365 152 21 2 chr4 16406720 16407994 -139222126 + Lx4B LINE L1 4794 6092 -966 5 710 591 178 7 15 chr4 16409030 16409167 -139220953 + CT-rich Low_complexity Low_complexity 2 137 0 5 710 646 304 31 36 chr4 16409190 16409412 -139220708 - ID_B1 SINE B4 -1 223 3 5 710 181 358 0 0 chr4 16409883 16409950 -139220170 + MIR SINE MIR 193 259 -3 5 710 644 262 0 0 chr4 16410492 16410618 -139219502 - B3 SINE B2 -89 127 2 5 710 185 224 0 17 chr4 16411726 16411785 -139218335 + CT-rich Low_complexity Low_complexity 2 59 0 5 710 770 293 38 5 chr4 16411953 16412162 -139217958 + B4A SINE B4 1 216 -76 5 710 1224 68 0 0 chr4 16412162 16412325 -139217795 + (CCA)n Simple_repeat Simple_repeat 1 163 0 5 710 694 316 5 0 chr4 16412449 16412661 -139217459 - L1_Rod LINE L1 -33 5814 5602 5 710 307 90 29 29 chr4 16413770 16413839 -139216281 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 5 710 294 359 116 62 chr4 16413958 16414251 -139215869 - MLT1E2 LTR MaLR -2 652 355 5 710 387 318 81 75 chr4 16414251 16414581 -139215539 - L1MEb LINE L1 -5147 1053 704 5 710 828 172 7 14 chr4 16414581 16414728 -139215392 - B1_Mus2 SINE Alu -1 146 1 5 710 387 310 79 75 chr4 16414728 16414901 -139215219 - L1MEb LINE L1 -5390 704 537 5 710 746 120 8 0 chr4 16415598 16415723 -139214397 + (GA)n Simple_repeat Simple_repeat 1 126 0 5 710 996 327 87 40 chr4 16417145 16417639 -139212481 - MLT2B1 LTR ERVL 0 520 4 5 710 1436 56 0 15 chr4 16417951 16418150 -139211970 - L1Md_F2 LINE L1 0 6582 6387 5 710 25 31 0 0 chr4 16419190 16419222 -139210898 + AT_rich Low_complexity Low_complexity 1 32 0 5 710 327 25 0 0 chr4 16419615 16419655 -139210465 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 710 262 287 81 34 chr4 16419719 16419848 -139210272 - MLT1A LTR MaLR -4 404 268 5 710 35 71 0 0 chr4 16420167 16420237 -139209883 + AT_rich Low_complexity Low_complexity 1 70 0 5 710 395 335 121 43 chr4 16420485 16420766 -139209354 + MLT1C LTR MaLR 163 465 -2 5 710 768 324 59 30 chr4 16421288 16421625 -139208495 + MLT1A0 LTR MaLR 19 365 0 5 710 198 171 0 0 chr4 16422032 16422073 -139208047 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 710 413 291 26 35 chr4 16424043 16424157 -139205963 - Lx8 LINE L1 -1090 6383 6271 5 710 325 286 130 32 chr4 16424173 16424296 -139205824 + B1F SINE Alu 2 136 -13 5 710 21 0 0 0 chr4 16425036 16425057 -139205063 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 4859 168 35 9 chr4 16426209 16427104 -139203016 - Lx2B LINE L1 -4 6996 6079 5 710 32 43 0 0 chr4 16427117 16427163 -139202957 + AT_rich Low_complexity Low_complexity 1 46 0 5 710 26 30 0 0 chr4 16427218 16427251 -139202869 + AT_rich Low_complexity Low_complexity 1 33 0 5 710 308 103 75 25 chr4 16427715 16427795 -139202325 - Lx9 LINE L1 -135 7509 7426 5 710 733 248 13 79 chr4 16427795 16428023 -139202097 - B3 SINE B2 -2 214 2 5 710 1019 255 83 26 chr4 16428193 16428702 -139201418 - Lx9 LINE L1 -1542 6102 5532 5 710 26 74 0 0 chr4 16428702 16428756 -139201364 + AT_rich Low_complexity Low_complexity 1 54 0 5 710 282 364 25 66 chr4 16429272 16429469 -139200651 - L2c LINE L2 -16 3371 3183 5 710 27 0 0 0 chr4 16429703 16429730 -139200390 + AT_rich Low_complexity Low_complexity 1 27 0 5 710 1580 238 46 10 chr4 16430183 16430577 -139199543 + MTD LTR MaLR 12 419 0 5 710 327 296 109 22 chr4 16430730 16430868 -139199252 + MLT1A LTR MaLR 225 374 0 5 710 277 338 65 14 chr4 16431136 16431274 -139198846 + MLT1F2 LTR MaLR 18 162 -398 5 710 25 31 0 0 chr4 16432365 16432397 -139197723 + AT_rich Low_complexity Low_complexity 1 32 0 5 710 257 339 144 64 chr4 16434602 16434804 -139195316 + MLT1F2 LTR MaLR 435 652 -2 5 710 880 105 14 0 chr4 16434998 16435141 -139194979 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 5 710 590 113 10 0 chr4 16435143 16435240 -139194880 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 5 710 845 308 4 7 chr4 16435556 16435837 -139194283 + L1_Mur3 LINE L1 5157 5436 -444 5 710 776 303 122 28 chr4 16436366 16436791 -139193329 + Lx8 LINE L1 7007 7471 -2 5 710 228 167 0 0 chr4 16437277 16437325 -139192795 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 710 24 0 0 0 chr4 16437953 16437977 -139192143 + AT_rich Low_complexity Low_complexity 1 24 0 5 710 311 209 27 160 chr4 16437977 16438165 -139191955 - Lx9 LINE L1 -560 7084 6922 5 710 1005 110 14 0 chr4 16438167 16438312 -139191808 + B1_Mus1 SINE Alu 2 148 0 5 710 437 228 11 0 chr4 16438334 16438426 -139191694 - Lx9 LINE L1 -709 6935 6843 5 710 433 250 0 0 chr4 16438430 16438522 -139191598 + Lx9 LINE L1 7085 7176 -468 5 710 651 309 65 45 chr4 16438536 16438933 -139191187 + Lx9 LINE L1 7225 7629 -15 5 710 1818 84 4 0 chr4 16439033 16439283 -139190837 + ORR1A2 LTR MaLR 77 327 0 5 710 250 328 0 0 chr4 16439821 16439879 -139190241 + ID4_ SINE ID 13 70 -13 5 710 506 16 0 16 chr4 16439884 16439948 -139190172 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 5 710 195 321 56 19 chr4 16440504 16440612 -139189508 + L2a LINE L2 3249 3360 -66 5 710 3477 97 6 4 chr4 16441156 16441652 -139188468 + L1_Mus3 LINE L1 6142 6638 0 5 710 2350 28 0 7 chr4 16442170 16442457 -139187663 - L1_Mm LINE L1 -418 5465 5181 6 710 471 18 0 0 chr4 16443670 16443726 -139186394 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 710 576 344 55 72 chr4 16443727 16443962 -139186158 - B4A SINE B4 -18 274 44 6 710 2931 152 77 18 chr4 16444414 16444971 -139185149 - Lx2B LINE L1 -3 6997 6408 6 710 314 280 53 52 chr4 16445131 16445309 -139184811 + L1MEb LINE L1 1270 1446 -5081 6 710 356 281 98 37 chr4 16445370 16445630 -139184490 + L1MA4 LINE L1 1512 1782 -4104 6 710 6931 180 37 31 chr4 16445675 16446608 -139183512 - Lx2B LINE L1 -2 6998 6074 6 710 335 23 0 22 chr4 16446608 16446653 -139183467 + (TCC)n Simple_repeat Simple_repeat 2 45 0 6 710 6931 192 36 30 chr4 16446653 16447171 -139182949 - Lx2B LINE L1 -927 6073 5567 6 710 251 281 71 53 chr4 16447168 16447450 -139182670 + L1_Rod LINE L1 1864 2150 -3697 6 710 805 319 43 5 chr4 16447708 16448079 -139182041 + L1_Rod LINE L1 2229 2639 -3208 6 710 1554 284 96 27 chr4 16448083 16448410 -139181710 + L1MA4 LINE L1 3209 3572 -2308 6 710 234 62 0 0 chr4 16448410 16448442 -139181678 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 6 710 1554 284 96 27 chr4 16448442 16449042 -139181078 + L1MA4 LINE L1 3573 4200 -1680 6 710 1493 210 3 0 chr4 16449047 16449357 -139180763 + L1Md_F LINE L1 344 654 -5962 6 710 1860 82 19 50 chr4 16449358 16449786 -139180334 + L1Md_F LINE L1 1103 1495 -4388 6 710 3193 84 43 8 chr4 16449800 16450292 -139179828 + L1Md_F LINE L1 1952 2460 -3423 6 710 558 246 135 77 chr4 16450293 16450759 -139179361 + L1MA4 LINE L1 5403 5930 -370 6 710 1306 104 11 0 chr4 16451134 16451317 -139178803 - B2_Mm1t SINE B2 -7 186 2 6 710 835 315 70 20 chr4 16451705 16452006 -139178114 + ORR1E LTR MaLR 1 316 -43 6 710 662 113 0 9 chr4 16452015 16452122 -139177998 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 6 710 2217 305 66 68 chr4 16452155 16453054 -139177066 + MTE-int LTR MaLR 1 888 -692 6 710 1133 38 49 25 chr4 16453054 16453217 -139176903 + L1Md_F3 LINE L1 6418 6584 0 6 710 2217 305 66 68 chr4 16453217 16453337 -139176783 + MTE-int LTR MaLR 889 1018 -562 6 710 326 317 32 128 chr4 16453353 16453541 -139176579 + MTEb LTR MaLR 202 371 -8 6 710 441 0 0 0 chr4 16453826 16453875 -139176245 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6 710 3558 92 14 4 chr4 16454064 16454580 -139175540 - L1_Mus3 LINE L1 0 6638 6118 6 710 381 195 52 0 chr4 16454580 16454657 -139175463 + LSU-rRNA_Hsa rRNA rRNA 1675 1755 -3280 6 710 309 240 97 68 chr4 16454779 16454882 -139175238 + RLTR25B LTR ERVK 404 509 -519 6 710 619 103 82 0 chr4 16454820 16454917 -139175203 + B1_Mus2 SINE Alu 43 147 0 6 710 240 243 0 0 chr4 16456428 16456539 -139173581 + (CCAA)n Simple_repeat Simple_repeat 1 111 0 6 710 282 29 0 0 chr4 16456555 16456590 -139173530 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 6 710 834 167 0 0 chr4 16456592 16456772 -139173348 + (CCAA)n Simple_repeat Simple_repeat 1 180 0 6 710 204 125 0 0 chr4 16456781 16456813 -139173307 + (ACCG)n Simple_repeat Simple_repeat 2 33 0 6 710 561 90 0 0 chr4 16456849 16456938 -139173182 + (CAAG)n Simple_repeat Simple_repeat 2 90 0 6 710 184 394 0 0 chr4 16457950 16458016 -139172104 + L2b LINE L2 3310 3375 0 6 710 21 0 0 0 chr4 16458064 16458085 -139172035 + AT_rich Low_complexity Low_complexity 1 21 0 6 710 234 244 196 22 chr4 16458129 16458221 -139171899 - PB1D7 SINE Alu -1 119 12 6 710 192 346 63 6 chr4 16458377 16458541 -139171579 - MIRm SINE MIR -8 254 84 6 710 619 285 51 0 chr4 16459031 16459189 -139170931 - Lx9 LINE L1 -1076 6568 6403 6 710 2017 329 80 13 chr4 16459210 16459990 -139170130 + Lx9 LINE L1 6591 7422 -222 6 710 198 0 0 0 chr4 16460048 16460070 -139170050 + (TAA)n Simple_repeat Simple_repeat 2 23 0 6 710 287 289 124 31 chr4 16460245 16460502 -139169618 + L1_Rod LINE L1 3005 3285 -2562 6 710 23143 160 17 16 chr4 16460594 16461159 -139168961 + L1VL4 LINE L1 693 1252 -5405 6 710 2595 36 0 0 chr4 16461159 16461467 -139168653 + L1Md_F3 LINE L1 6263 6570 -14 6 710 23143 141 48 5 chr4 16461467 16463647 -139166473 + L1VL4 LINE L1 1253 3482 -2401 6 710 342 0 0 0 chr4 16463647 16463685 -139166435 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 710 23143 141 48 5 chr4 16463685 16465553 -139164567 + L1VL4 LINE L1 3483 5480 -403 6 710 846 0 0 0 chr4 16466455 16466549 -139163571 + (GAA)n Simple_repeat Simple_repeat 1 94 0 6 710 296 266 0 69 chr4 16468123 16468224 -139161896 + RMER12 LTR ERVK 742 835 -487 6 710 201 74 0 0 chr4 16468289 16468316 -139161804 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 710 581 340 25 0 chr4 16468349 16468511 -139161609 - B3A SINE B2 -32 166 1 6 710 273 29 0 0 chr4 16469077 16469111 -139161009 - MTA_Mm-int LTR MaLR -1064 34 1 6 710 3315 41 5 0 chr4 16469111 16469505 -139160615 - MTA_Mm LTR MaLR 0 396 1 6 710 8402 62 8 1 chr4 16469505 16470595 -139159525 - MTA_Mm-int LTR MaLR 0 1098 1 6 710 3367 60 80 0 chr4 16470597 16471034 -139159086 - MT2C_Mm LTR ERVL 0 475 4 6 710 510 17 0 0 chr4 16471034 16471093 -139159027 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 710 5293 69 84 1 chr4 16471215 16472035 -139158085 + L1_Mus1 LINE L1 5652 6580 -2 6 710 35380 34 1 0 chr4 16472421 16478245 -139151875 + L1Md_T LINE L1 1 5589 -297 6 710 8901 9 0 0 chr4 16478245 16479241 -139150879 + L1Md_T LINE L1 5590 6585 0 6 710 249 33 0 0 chr4 16479347 16479377 -139150743 + (A)n Simple_repeat Simple_repeat 1 30 0 6 710 1236 138 5 0 chr4 16479499 16479688 -139150432 - B2_Mm2 SINE B2 -5 190 1 6 710 404 280 130 19 chr4 16479982 16480275 -139149845 - L1MC4a LINE L1 -1463 6419 6068 6 710 937 305 56 45 chr4 16480519 16480897 -139149223 + MER89 LTR ERV1 178 559 0 6 710 268 333 42 83 chr4 16480900 16481044 -139149076 + MER5A DNA MER1_type 52 189 0 6 710 4459 118 23 14 chr4 16481150 16481935 -139148185 + L1VL4 LINE L1 226 1018 -2541 6 710 24 77 0 0 chr4 16484079 16484131 -139145989 + AT_rich Low_complexity Low_complexity 1 52 0 6 710 398 189 9 0 chr4 16484184 16484290 -139145830 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 710 8479 111 41 25 chr4 16484647 16485992 -139144128 + Lx3A LINE L1 5614 6979 -2 6 710 540 0 0 0 chr4 16485997 16486057 -139144063 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 6 710 394 296 103 103 chr4 16486184 16486504 -139143616 - MLT1A1 LTR MaLR 0 408 89 6 710 350 223 12 198 chr4 16486562 16486724 -139143396 + RMER15 LTR ERVL 1 132 -443 6 710 684 310 19 58 chr4 16486750 16487007 -139143113 + RMER15 LTR ERVL 275 521 -54 6 710 239 204 20 0 chr4 16487560 16487609 -139142511 + RSINE1 SINE B4 53 102 -63 6 710 202 354 72 58 chr4 16487612 16487750 -139142370 - L2 LINE L2 -776 2643 2504 6 710 1351 189 170 0 chr4 16487756 16488076 -139142044 + MTC LTR MaLR 40 413 -8 6 710 500 218 116 55 chr4 16488264 16488463 -139141657 - Lx9 LINE L1 -10 7634 7424 6 710 356 291 17 43 chr4 16488659 16488774 -139141346 - PB1D10 SINE Alu -1 116 5 6 710 7967 133 41 1 chr4 16489082 16490363 -139139757 + Lx2 LINE L1 5691 6997 0 6 710 243 0 0 0 chr4 16490865 16490892 -139139228 + (T)n Simple_repeat Simple_repeat 1 27 0 6 710 264 293 37 75 chr4 16491413 16491520 -139138600 - Lx7 LINE L1 -1133 6563 6461 6 710 31 26 0 0 chr4 16491525 16491563 -139138557 + AT_rich Low_complexity Low_complexity 1 38 0 6 710 855 259 93 67 chr4 16491587 16491943 -139138177 - MER67D LTR ERV1 -149 365 1 6 710 946 246 34 5 chr4 16492329 16492533 -139137587 - B3 SINE B2 -6 210 1 6 710 984 80 13 7 chr4 16492770 16492921 -139137199 + L1_Mus2 LINE L1 6415 6566 0 6 710 923 304 39 55 chr4 16493146 16493538 -139136582 - MTE2a LTR MaLR -21 398 9 6 710 363 162 0 0 chr4 16494044 16494143 -139135977 + T-rich Low_complexity Low_complexity 1 99 0 6 710 398 366 79 6 chr4 16494984 16495149 -139134971 + B4A SINE B4 3 179 -113 6 710 845 164 187 45 chr4 16495236 16495434 -139134686 - URR1A DNA MER1_type 0 226 1 6 710 352 241 115 0 chr4 16495434 16495521 -139134599 + MTE2b LTR MaLR 26 122 -237 6 710 225 0 0 0 chr4 16495605 16495630 -139134490 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 710 219 353 8 41 chr4 16495634 16495755 -139134365 - MIRb SINE MIR -151 117 1 6 710 22 35 0 0 chr4 16495793 16495822 -139134298 + AT_rich Low_complexity Low_complexity 1 29 0 6 710 249 197 0 0 chr4 16496729 16496795 -139133325 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 710 583 279 16 48 chr4 16496795 16496983 -139133137 - B3A SINE B2 -16 182 1 6 710 732 316 50 14 chr4 16497625 16497843 -139132277 + MTE2b LTR MaLR 113 338 -41 6 710 21 0 0 0 chr4 16498723 16498744 -139131376 + AT_rich Low_complexity Low_complexity 1 21 0 6 710 1046 103 0 0 chr4 16498871 16499007 -139131113 + B1_Mus1 SINE Alu 3 138 -10 6 710 281 26 26 0 chr4 16499007 16499045 -139131075 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 710 289 302 81 0 chr4 16499253 16499339 -139130781 + B3 SINE B2 118 210 -6 6 710 768 281 50 35 chr4 16499366 16499849 -139130271 - Lx9 LINE L1 -1311 6162 5675 6 710 265 355 11 0 chr4 16499849 16499942 -139130178 + MER5B DNA MER1_type 2 95 -83 6 710 1798 272 90 67 chr4 16500172 16500452 -139129668 + Lx6 LINE L1 328 616 -7112 1 710 2333 171 100 18 chr4 16500452 16500940 -139129180 + RLTR11A LTR ERVK 1 528 0 2 710 13910 196 68 24 chr4 16500940 16504441 -139125679 + Lx6 LINE L1 617 4275 -1605 1 710 450 0 0 0 chr4 16504441 16504491 -139125629 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 710 13910 180 63 15 chr4 16504491 16504767 -139125353 + Lx6 LINE L1 4276 4563 -1317 1 710 1082 283 122 28 chr4 16504772 16505205 -139124915 - Lx6 LINE L1 -337 7123 6300 4 710 5937 249 68 22 chr4 16505210 16506618 -139123502 + Lx6 LINE L1 5424 6876 -584 1 710 375 23 0 0 chr4 16506618 16506662 -139123458 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 710 1044 46 0 0 chr4 16506662 16506791 -139123329 + (GGGAGA)n Simple_repeat Simple_repeat 3 132 0 6 710 5937 258 80 31 chr4 16506791 16507318 -139122802 + Lx6 LINE L1 6877 7450 -10 1 710 1818 217 51 11 chr4 16508423 16508795 -139121325 + Lx5 LINE L1 6197 6583 -467 7 710 1030 269 150 13 chr4 16508788 16509101 -139121019 + Lx5 LINE L1 6688 7043 -7 7 710 29 47 0 0 chr4 16509299 16509342 -139120778 + AT_rich Low_complexity Low_complexity 1 43 0 8 710 1492 248 158 25 chr4 16509634 16510122 -139119998 + RMER19B LTR ERVK 297 849 -53 9 710 1130 82 7 0 chr4 16510124 16510271 -139119849 + B1_Mus1 SINE Alu 1 148 0 1 710 193 53 25 50 chr4 16510276 16510316 -139119804 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 710 286 172 15 45 chr4 16510318 16510385 -139119735 + RMER19B LTR ERVK 838 902 0 9 710 23 33 0 0 chr4 16510700 16510730 -139119390 + AT_rich Low_complexity Low_complexity 1 30 0 1 710 484 354 61 3 chr4 16511432 16511682 -139118438 + B4 SINE B4 1 290 -2 1 710 530 29 15 0 chr4 16511720 16511788 -139118332 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 710 4389 103 11 3 chr4 16512042 16512683 -139117437 + L1_Mus3 LINE L1 5988 6633 -5 1 710 260 111 0 22 chr4 16512796 16512842 -139117278 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 1 710 24 0 0 0 chr4 16512930 16512954 -139117166 + AT_rich Low_complexity Low_complexity 1 24 0 1 710 216 135 0 0 chr4 16513010 16513047 -139117073 + (GGA)n Simple_repeat Simple_repeat 3 39 0 1 710 355 229 97 48 chr4 16513083 16513207 -139116913 - RMER15 LTR ERVL -14 561 432 1 88 31914 85 8 5 chr4 16513327 16518650 -139111470 + L1Md_F2 LINE L1 249 5586 -297 2 711 8171 40 0 7 chr4 16518651 16519653 -139110467 + L1Md_F2 LINE L1 5588 6582 0 2 711 825 355 28 8 chr4 16519832 16520224 -139109896 - Lx8 LINE L1 -613 6860 6461 2 711 340 293 6 0 chr4 16520508 16520599 -139109521 - MLT1A0 LTR MaLR -203 162 71 2 711 803 345 9 0 chr4 16520724 16520944 -139109176 + B4A SINE B4 70 291 -1 2 711 249 163 0 0 chr4 16521009 16521058 -139109062 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 711 30620 105 8 2 chr4 16521118 16527403 -139102717 - L1_Mus1 LINE L1 -2 6565 238 2 711 1368 267 50 67 chr4 16528001 16528197 -139101923 + MTD LTR MaLR 1 200 -219 2 711 1822 37 152 0 chr4 16528197 16528441 -139101679 + L1Md_F3 LINE L1 6290 6570 -14 2 711 1368 277 57 64 chr4 16528441 16528673 -139101447 + MTD LTR MaLR 171 395 -24 2 711 234 207 0 0 chr4 16529116 16529174 -139100946 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 2 711 216 320 0 13 chr4 16529236 16529312 -139100808 + CT-rich Low_complexity Low_complexity 5 79 0 2 711 300 330 37 43 chr4 16529347 16529534 -139100586 - L1MA4 LINE L1 -369 5931 5746 3 711 7318 111 28 12 chr4 16529578 16531618 -139098502 + L1Md_F LINE L1 207 2273 -3610 3 711 3121 74 2 7 chr4 16531621 16532042 -139098078 + L1Md_F2 LINE L1 6145 6563 -19 3 711 262 310 75 7 chr4 16532053 16532199 -139097921 - L1M2 LINE L1 -445 5726 5571 3 711 885 317 90 83 chr4 16532293 16532841 -139097279 - L1M2 LINE L1 -755 5388 4800 3 711 1070 74 0 7 chr4 16532841 16532991 -139097129 + (TTTCC)n Simple_repeat Simple_repeat 3 151 0 3 711 885 317 90 83 chr4 16532991 16533033 -139097087 - L1M2 LINE L1 -1344 4799 4758 3 711 4063 87 91 0 chr4 16533033 16533617 -139096503 + Lx3_Mus LINE L1 6373 7009 0 3 711 885 317 90 83 chr4 16533617 16534663 -139095457 - L1M2 LINE L1 -1386 4757 3739 3 711 21 0 0 0 chr4 16534663 16534684 -139095436 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 2217 301 72 71 chr4 16534701 16535411 -139094709 - Lx8 LINE L1 -8 7465 6782 3 711 3931 177 29 27 chr4 16535411 16536164 -139093956 + Lx2 LINE L1 6228 6982 -15 3 711 2217 301 72 71 chr4 16536164 16536560 -139093560 - Lx8 LINE L1 -692 6781 6358 3 711 2183 155 35 11 chr4 16536652 16537054 -139093066 + RLTR31A_Mm LTR ERVK 1 440 -113 3 711 1016 322 97 57 chr4 16537087 16538494 -139091626 - L1_Rod LINE L1 -2230 3650 2157 4 711 350 301 114 20 chr4 16538494 16538643 -139091477 - RSINE1 SINE B4 -1 164 2 4 711 1016 318 99 60 chr4 16538643 16539556 -139090564 - L1_Rod LINE L1 -3671 2176 1223 4 711 453 219 46 51 chr4 16539763 16539846 -139090274 - Lx7 LINE L1 -173 7523 7442 4 711 603 0 0 0 chr4 16539846 16539913 -139090207 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 711 453 219 46 51 chr4 16539913 16540026 -139090094 - Lx7 LINE L1 -255 7441 7328 4 711 2628 273 42 33 chr4 16540075 16540853 -139089267 - Lx7 LINE L1 -356 7340 6556 4 711 8555 202 67 7 chr4 16540855 16543055 -139087065 - Lx7 LINE L1 -1486 6210 3878 4 711 276 78 30 30 chr4 16543055 16543121 -139086999 + (TTTTTG)n Simple_repeat Simple_repeat 1 66 0 4 711 1156 48 7 0 chr4 16543122 16543268 -139086852 - B1_Mm SINE Alu 0 147 1 4 711 2304 245 127 30 chr4 16543300 16544003 -139086117 + L1_Mur3 LINE L1 349 1119 -6593 4 711 1438 196 132 21 chr4 16544003 16544336 -139085784 - RLTR26 LTR ERVK 0 642 273 4 711 368 43 0 0 chr4 16544354 16544401 -139085719 - Lx2A LINE L1 -1276 5732 5686 4 711 34 0 0 0 chr4 16544401 16544435 -139085685 + AT_rich Low_complexity Low_complexity 1 34 0 4 711 2063 82 37 7 chr4 16544464 16544760 -139085360 - L1_Mus1 LINE L1 0 6567 6263 5 711 27301 119 11 35 chr4 16544760 16548535 -139081585 - Lx2A LINE L1 -192 5691 1923 4 711 2261 97 0 0 chr4 16548535 16548856 -139081264 - L1_Mus2 LINE L1 0 6566 6246 5 711 27301 153 28 61 chr4 16548856 16550526 -139079594 - Lx2A LINE L1 -3961 1922 395 4 711 590 306 139 30 chr4 16550659 16550933 -139079187 + ORR1D2 LTR MaLR 5 317 -53 5 711 372 22 0 0 chr4 16550933 16550978 -139079142 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 711 590 306 139 30 chr4 16550978 16551033 -139079087 + ORR1D2 LTR MaLR 318 370 0 5 711 781 117 0 0 chr4 16551094 16551205 -139078915 + B1_Mus1 SINE Alu 1 111 -37 5 711 273 149 0 0 chr4 16551218 16551285 -139078835 + (CAAAAA)n Simple_repeat Simple_repeat 1 67 0 5 711 189 0 0 0 chr4 16551335 16551356 -139078764 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 5 711 1507 204 42 148 chr4 16551706 16552294 -139077826 + Lx7 LINE L1 7159 7684 -12 5 711 243 0 0 0 chr4 16552432 16552459 -139077661 + (T)n Simple_repeat Simple_repeat 1 27 0 5 711 242 236 42 0 chr4 16554329 16554401 -139075719 + (TATG)n Simple_repeat Simple_repeat 3 77 0 5 711 4140 235 68 35 chr4 16554409 16555557 -139074563 - Lx9 LINE L1 -140 7504 6319 6 711 1252 237 84 25 chr4 16555579 16556078 -139074042 + Lx9 LINE L1 5550 6100 -1544 6 711 450 114 0 0 chr4 16556304 16556374 -139073746 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 711 713 300 60 62 chr4 16556375 16556858 -139073262 - Lx9 LINE L1 -187 7457 6976 6 711 237 310 0 0 chr4 16556863 16556934 -139073186 + Lx9 LINE L1 6907 6977 -667 6 711 269 316 31 119 chr4 16557093 16557287 -139072833 + MLT1B LTR MaLR 4 180 -210 6 711 2097 160 11 3 chr4 16557448 16557811 -139072309 - RLTR9A LTR ERVK -2 366 1 6 711 313 159 28 42 chr4 16557814 16557886 -139072234 - ETnERV2-int LTR ERVK -5 7401 7331 6 711 276 321 27 0 chr4 16558107 16558219 -139071901 - ETnERV2-int LTR ERVK -984 6422 6308 6 711 12761 191 51 47 chr4 16558346 16558822 -139071298 - ETnERV2-int LTR ERVK -1230 4176 3821 6 711 4006 66 60 8 chr4 16558822 16559354 -139070766 + LTRIS2 LTR ERV1 5 564 0 6 711 14558 154 67 32 chr4 16559354 16560290 -139069830 - ETnERV2-int LTR ERVK -3312 4094 2877 6 711 732 23 0 0 chr4 16560290 16560376 -139069744 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 711 14558 160 40 48 chr4 16560376 16563266 -139066854 - ETnERV2-int LTR ERVK -3473 3933 1067 6 711 213 39 0 0 chr4 16563268 16563294 -139066826 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 711 376 51 17 17 chr4 16563322 16563382 -139066738 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 6 711 2033 166 16 19 chr4 16563692 16564061 -139066059 - RLTR9A LTR ERVK 0 368 1 6 711 489 172 0 0 chr4 16564587 16564680 -139065440 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 711 1928 120 143 14 chr4 16564681 16565045 -139065075 - Lx2 LINE L1 -1 6996 6586 7 711 349 315 34 87 chr4 16565046 16565090 -139065030 - RMER12B LTR ERVK -284 1288 1244 7 711 282 29 0 0 chr4 16565090 16565125 -139064995 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 7 711 5186 202 52 40 chr4 16565125 16566371 -139063749 - RMER12B LTR ERVK -329 1243 11 7 711 35886 72 4 1 chr4 16566406 16572600 -139057520 - L1Md_F3 LINE L1 0 6584 419 7 711 1056 262 152 6 chr4 16573304 16573619 -139056501 - ORR1D1 LTR MaLR -5 369 9 7 711 747 278 17 0 chr4 16573885 16574061 -139056059 - ORR1D1 LTR MaLR -1 373 195 7 711 1647 92 4 9 chr4 16574074 16574305 -139055815 - L1_Mus1 LINE L1 0 6567 6338 7 711 2143 110 0 0 chr4 16574305 16574606 -139055514 + L1_Mus1 LINE L1 6013 6313 -254 7 711 963 219 29 15 chr4 16574608 16574812 -139055308 - ORR1D1 LTR MaLR -165 209 3 7 711 510 83 0 0 chr4 16576765 16576837 -139053283 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 711 1147 49 0 40 chr4 16576999 16577149 -139052971 + B1_Mus1 SINE Alu 1 144 -4 7 711 369 0 0 0 chr4 16577151 16577192 -139052928 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 8 711 277 293 205 12 chr4 16577210 16577376 -139052744 + Lx7 LINE L1 7185 7382 -314 8 711 780 42 0 0 chr4 16577400 16577496 -139052624 + (GA)n Simple_repeat Simple_repeat 1 96 0 8 711 23 0 0 0 chr4 16577578 16577601 -139052519 + AT_rich Low_complexity Low_complexity 1 23 0 8 711 6369 106 19 12 chr4 16577813 16578795 -139051325 + Lx3_Mus LINE L1 6018 7006 -3 8 711 21 0 0 0 chr4 16579013 16579034 -139051086 + AT_rich Low_complexity Low_complexity 1 21 0 8 711 3182 56 3 0 chr4 16579609 16580001 -139050119 - MTA_Mm LTR MaLR -3 393 1 8 711 579 191 78 42 chr4 16580064 16580194 -139049926 + B1_Mm SINE Alu 1 138 -9 8 711 210 37 0 0 chr4 16580194 16580221 -139049899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 711 579 191 78 42 chr4 16580221 16580232 -139049888 + B1_Mm SINE Alu 139 147 0 8 711 227 373 68 0 chr4 16580279 16580440 -139049680 - L2 LINE L2 -436 2983 2812 8 711 614 291 72 14 chr4 16580656 16580865 -139049255 - MTD LTR MaLR 0 419 199 9 711 568 304 20 0 chr4 16580884 16581032 -139049088 - B3 SINE B2 -6 210 60 9 711 282 196 0 0 chr4 16581096 16581152 -139048968 - B3A SINE B2 -141 57 2 9 711 380 357 24 83 chr4 16581152 16581319 -139048801 - MTD LTR MaLR -209 210 54 9 711 417 243 0 0 chr4 16581966 16582040 -139048080 + PB1D10 SINE Alu 32 105 -12 9 711 3425 233 47 60 chr4 16582499 16583415 -139046705 + RMER13B LTR ERVK 5 908 0 9 711 1346 259 152 4 chr4 16583821 16584366 -139045754 - L1MA7 LINE L1 -297 5994 5369 9 711 203 175 0 0 chr4 16584490 16584530 -139045590 + T-rich Low_complexity Low_complexity 1 40 0 9 711 1293 184 13 17 chr4 16584895 16585127 -139044993 + RLTR17 LTR ERVK 1 231 -461 9 711 6657 92 15 2 chr4 16585154 16586107 -139044013 - L1_Mus3 LINE L1 -6 6632 5668 9 711 2133 182 84 51 chr4 16586107 16586581 -139043539 + RLTR17 LTR ERVK 203 692 0 9 711 290 272 122 1 chr4 16588082 16588220 -139041900 + MIR SINE MIR 54 201 -61 9 711 224 232 12 24 chr4 16589152 16589236 -139040884 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 711 323 340 88 66 chr4 16589243 16589517 -139040603 - B4 SINE B4 -11 281 2 1 711 479 359 27 0 chr4 16590525 16590709 -139039411 + LTR33C LTR ERVL 10 198 -431 1 711 417 310 111 25 chr4 16591262 16591503 -139038617 + ERVL-E-int LTR ERVL 316 557 -5110 1 711 320 310 8 17 chr4 16592246 16592364 -139037756 + Lx8 LINE L1 7355 7471 -2 1 711 2182 181 13 60 chr4 16592523 16592993 -139037127 + Lx LINE L1 6203 6650 -4 1 711 382 311 99 47 chr4 16593016 16593208 -139036912 + ERVL-E-int LTR ERVL 1527 1728 -3939 1 711 435 279 79 42 chr4 16593468 16593733 -139036387 + ERVL-E-int LTR ERVL 2070 2344 -3323 1 711 210 105 0 0 chr4 16593778 16593816 -139036304 + (T)n Simple_repeat Simple_repeat 1 38 0 1 711 5597 34 5 1 chr4 16593888 16594559 -139035561 - L1Md_F3 LINE L1 -2 6582 5910 1 711 288 0 0 0 chr4 16594723 16594755 -139035365 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 711 562 93 37 9 chr4 16594755 16594863 -139035257 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 711 457 294 41 20 chr4 16595691 16595837 -139034283 - RSINE1 SINE B4 -4 161 13 1 711 21 0 0 0 chr4 16595929 16595950 -139034170 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 1726 27 27 4 chr4 16595950 16596175 -139033945 - L1Md_F3 LINE L1 -2 6582 6353 1 711 1446 40 0 0 chr4 16596175 16596348 -139033772 + L1Md_F3 LINE L1 6213 6385 -197 1 711 399 337 75 11 chr4 16596629 16596803 -139033317 + RMER30 DNA MER1_type 5 189 -13 1 711 539 0 0 29 chr4 16597019 16597087 -139033033 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 1 711 539 301 98 25 chr4 16598101 16598191 -139031929 - Lx8 LINE L1 -627 6846 6751 1 711 261 0 0 0 chr4 16598191 16598220 -139031900 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1 711 539 301 98 25 chr4 16598220 16598374 -139031746 - Lx8 LINE L1 -723 6750 6585 1 711 332 261 22 11 chr4 16598431 16598520 -139031600 + Lx7 LINE L1 6864 6953 -743 1 711 270 360 45 8 chr4 16598534 16598666 -139031454 + Lx7 LINE L1 7014 7162 -311 1 711 651 60 0 0 chr4 16598751 16598835 -139031285 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 1 711 5900 133 12 1 chr4 16598853 16599762 -139030358 - L1_Mus4 LINE L1 -12 6624 5706 1 711 2598 148 12 0 chr4 16600235 16600641 -139029479 - L1_Mm LINE L1 -172 5711 5301 1 711 7509 169 38 35 chr4 16600664 16602292 -139027828 - L1_Mm LINE L1 -1886 3997 2366 1 711 288 0 0 0 chr4 16602881 16602913 -139027207 + (T)n Simple_repeat Simple_repeat 1 32 0 1 711 988 0 0 0 chr4 16603069 16603176 -139026944 + U6 snRNA snRNA 1 107 0 1 711 30951 5 6 0 chr4 16603176 16606704 -139023416 + L1Md_A LINE L1 2037 5586 -297 1 711 8978 5 0 0 chr4 16606704 16607699 -139022421 + L1Md_A LINE L1 5587 6581 -1 1 711 183 356 56 56 chr4 16607911 16608054 -139022066 + MIR SINE MIR 55 197 -65 1 711 272 380 19 0 chr4 16608645 16608753 -139021367 - LTR16E1 LTR ERVL -7 531 422 1 711 216 0 0 0 chr4 16608801 16608825 -139021295 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 1 711 933 242 126 0 chr4 16609121 16609352 -139020768 + MTE2b LTR MaLR 1 260 -119 1 711 367 359 14 21 chr4 16609421 16609566 -139020554 + MTE2b LTR MaLR 236 379 0 1 711 1752 220 25 0 chr4 16609945 16610304 -139019816 - Lx6 LINE L1 -861 6599 6232 1 711 2484 42 3 0 chr4 16610348 16610657 -139019463 - L1Md_F2 LINE L1 -1272 4611 4302 1 711 7702 69 0 2 chr4 16610654 16611646 -139018474 + L1Md_F2 LINE L1 4595 5586 -297 1 711 8056 46 2 0 chr4 16611646 16612628 -139017492 + L1Md_F2 LINE L1 5587 6570 -12 1 711 1133 88 0 0 chr4 16612645 16612792 -139017328 + B1_Mus1 SINE Alu 2 148 0 1 711 250 308 53 59 chr4 16612818 16612987 -139017133 - Lx6 LINE L1 -1310 6150 5983 1 711 536 178 0 0 chr4 16612988 16613078 -139017042 + Lx6 LINE L1 6653 6742 -718 1 711 198 0 0 0 chr4 16613080 16613102 -139017018 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 711 264 30 0 0 chr4 16613145 16613178 -139016942 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 711 240 329 88 0 chr4 16614180 16614317 -139015803 + Lx5 LINE L1 6525 6673 -377 1 711 774 255 147 33 chr4 16614321 16614593 -139015527 + Lx6 LINE L1 7132 7434 -26 1 711 26 0 0 0 chr4 16614593 16614619 -139015501 + AT_rich Low_complexity Low_complexity 1 26 0 1 711 236 109 43 0 chr4 16615275 16615303 -139014817 + C-rich Low_complexity Low_complexity 25 52 0 1 711 1370 55 0 6 chr4 16615303 16615484 -139014636 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 711 236 109 43 0 chr4 16615484 16615501 -139014619 + C-rich Low_complexity Low_complexity 6 24 0 1 711 909 79 0 58 chr4 16615515 16615703 -139014417 + (TTCCC)n Simple_repeat Simple_repeat 1 177 0 1 711 644 36 12 0 chr4 16615714 16615797 -139014323 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 1 711 200 304 12 71 chr4 16616173 16616258 -139013862 + MIRc SINE MIR 74 153 -115 1 711 916 300 62 4 chr4 16616302 16616576 -139013544 - Lx9 LINE L1 -965 6679 6390 1 711 26678 122 57 9 chr4 16616653 16622723 -139007397 - L1_Mus1 LINE L1 -1 6566 184 1 711 685 295 219 14 chr4 16623083 16623612 -139006508 + Lx9 LINE L1 6801 7418 -226 1 711 414 0 0 0 chr4 16623612 16623658 -139006462 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 711 685 313 124 16 chr4 16623658 16623825 -139006295 + Lx9 LINE L1 7419 7622 -22 1 711 948 95 0 0 chr4 16624372 16624509 -139005611 + (GAA)n Simple_repeat Simple_repeat 2 138 0 1 711 463 86 100 0 chr4 16624519 16624589 -139005531 - RMER1C Other Other -158 1184 1108 1 711 2507 184 96 17 chr4 16624817 16625241 -139004879 + RLTR20B2 LTR ERVK 1 464 -96 1 711 393 110 0 0 chr4 16625241 16625314 -139004806 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 711 2507 184 96 17 chr4 16625314 16625408 -139004712 + RLTR20B2 LTR ERVK 465 560 0 1 711 180 0 0 0 chr4 16625625 16625645 -139004475 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 711 871 290 158 62 chr4 16625869 16626406 -139003714 - MER44D DNA MER2_type -66 639 51 1 711 472 65 13 13 chr4 16626411 16626489 -139003631 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 711 321 322 88 7 chr4 16626524 16626671 -139003449 + MLT1B LTR MaLR 223 381 -9 1 711 306 0 0 0 chr4 16627150 16627184 -139002936 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 711 234 282 0 40 chr4 16627184 16627258 -139002862 - ID4_ SINE ID -10 73 3 1 711 22 88 0 0 chr4 16629369 16629426 -139000694 + AT_rich Low_complexity Low_complexity 1 57 0 1 711 1994 216 40 0 chr4 16629426 16629824 -139000296 - Lx3C LINE L1 -16 6960 6547 1 711 4076 148 21 7 chr4 16629827 16630578 -138999542 + L1_Mur1 LINE L1 3560 4321 -1565 1 711 14248 110 8 1 chr4 16630655 16633486 -138996634 + L1Md_F2 LINE L1 412 3262 -2621 1 711 9597 19 0 0 chr4 16633483 16634591 -138995529 - L1Md_T LINE L1 -127 5756 4649 1 711 7512 9 0 0 chr4 16634591 16635433 -138994687 + L1Md_T LINE L1 5741 6582 0 1 711 17759 70 2 0 chr4 16635433 16637769 -138992351 + L1Md_F2 LINE L1 3249 5588 -295 1 711 7336 82 1 8 chr4 16637770 16638770 -138991350 + L1Md_F2 LINE L1 5590 6582 0 1 711 2890 142 15 6 chr4 16638770 16639238 -138990882 + Lx2 LINE L1 6494 6965 -32 1 711 274 232 11 70 chr4 16639312 16639432 -138990688 + (TATAA)n Simple_repeat Simple_repeat 1 116 0 1 711 2182 206 43 19 chr4 16639432 16639947 -138990173 - RLTR11A2 LTR ERVK 0 527 1 1 711 274 232 11 70 chr4 16639947 16640011 -138990109 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 1 711 3113 199 97 8 chr4 16640016 16640740 -138989380 + RLTR25B LTR ERVK 66 853 -175 1 711 1082 55 14 0 chr4 16640753 16640898 -138989222 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 1 711 759 213 146 71 chr4 16641091 16641344 -138988776 + RLTR25B LTR ERVK 757 1028 0 1 711 21 0 0 0 chr4 16641600 16641621 -138988499 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 362 222 75 32 chr4 16643271 16643364 -138986756 + RMER1B Other Other 211 307 -759 1 711 1991 219 90 13 chr4 16643433 16643890 -138986230 + RMER1B Other Other 560 1051 -15 1 711 209 0 97 0 chr4 16644360 16644391 -138985729 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 711 27 29 0 0 chr4 16645710 16645744 -138984376 + AT_rich Low_complexity Low_complexity 1 34 0 1 711 540 234 32 16 chr4 16645935 16646061 -138984059 + B1F SINE Alu 22 149 0 1 712 24 32 0 0 chr4 16646148 16646179 -138983941 + AT_rich Low_complexity Low_complexity 1 31 0 1 712 521 136 0 10 chr4 16647739 16647843 -138982277 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 712 449 76 0 15 chr4 16647827 16647894 -138982226 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 712 411 21 0 0 chr4 16647894 16647942 -138982178 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 712 478 237 124 26 chr4 16647958 16648192 -138981928 - Lx8 LINE L1 -1584 5889 5633 1 712 1471 290 40 6 chr4 16648375 16648729 -138981391 - Lx6 LINE L1 -169 7291 6926 1 712 4098 118 14 78 chr4 16648845 16649662 -138980458 - RMER17A LTR ERVK 0 751 1 1 712 433 361 50 34 chr4 16649724 16650045 -138980075 + Lx8 LINE L1 6836 7161 -312 1 712 232 123 68 0 chr4 16650240 16650313 -138979807 + GA-rich Low_complexity Low_complexity 2 79 0 1 712 767 338 9 0 chr4 16650489 16650699 -138979421 + B4 SINE B4 12 223 -69 1 712 362 250 0 48 chr4 16650717 16650801 -138979319 + B4 SINE B4 210 289 -3 1 712 248 188 0 15 chr4 16651138 16651203 -138978917 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1 712 294 212 12 36 chr4 16651416 16651499 -138978621 - B3 SINE B2 -4 212 132 1 712 625 234 0 0 chr4 16651754 16651865 -138978255 - B3 SINE B2 -75 141 31 1 712 355 258 32 16 chr4 16652722 16652836 -138977284 + B4 SINE B4 1 122 -43 1 712 521 30 15 0 chr4 16653021 16653088 -138977032 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 712 3588 202 70 35 chr4 16653442 16654064 -138976056 + Lx5 LINE L1 6215 6873 -177 1 712 4410 99 17 2 chr4 16654064 16654699 -138975421 + L1_Mus4 LINE L1 5986 6630 -6 1 712 3588 202 70 35 chr4 16654699 16654880 -138975240 + Lx5 LINE L1 6874 7046 -4 1 712 558 79 0 0 chr4 16654934 16655010 -138975110 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 712 34 104 0 0 chr4 16655574 16655699 -138974421 + AT_rich Low_complexity Low_complexity 1 125 0 1 712 1968 112 6 19 chr4 16655821 16656132 -138973988 - L1_Mus3 LINE L1 -4 6634 6328 1 712 226 362 47 19 chr4 16656442 16656763 -138973357 - L1MEe LINE L1 -1065 5081 4752 1 712 1111 64 0 0 chr4 16656909 16657050 -138973070 + B1_Mus1 SINE Alu 2 142 -6 1 712 348 24 0 0 chr4 16657052 16657093 -138973027 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 712 228 320 136 10 chr4 16657155 16657354 -138972766 - L1MEe LINE L1 -3293 2853 2630 1 712 1105 290 130 8 chr4 16657435 16657804 -138972316 + MTD LTR MaLR 1 414 -5 1 712 330 318 111 49 chr4 16657869 16658219 -138971901 - L1MEe LINE L1 -3720 2446 2075 1 712 297 257 81 0 chr4 16658231 16658305 -138971815 - B3 SINE B2 -110 106 27 1 712 21 0 0 0 chr4 16658337 16658358 -138971762 + AT_rich Low_complexity Low_complexity 1 21 0 1 712 1337 267 26 7 chr4 16659194 16659503 -138970617 + Lx7 LINE L1 6313 6627 -1069 1 712 207 0 0 0 chr4 16659546 16659569 -138970551 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 712 1748 234 91 20 chr4 16659575 16659857 -138970263 + Lx7 LINE L1 6736 7028 -668 1 712 266 0 0 29 chr4 16659857 16659892 -138970228 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 712 1748 234 91 20 chr4 16659892 16660062 -138970058 + Lx7 LINE L1 7029 7219 -477 1 712 2748 205 14 19 chr4 16660062 16660961 -138969159 - MurERV4-int LTR ERVK -3191 2069 1097 2 712 1159 186 11 69 chr4 16660957 16661217 -138968903 - MurERV4-int LTR ERVK -4822 438 194 2 712 266 215 13 0 chr4 16661217 16661296 -138968824 + GA-rich Low_complexity Low_complexity 1 80 0 2 712 478 213 139 89 chr4 16661310 16661330 -138968790 - MurERV4-int LTR ERVK -5051 209 192 2 712 1158 103 0 0 chr4 16661330 16661543 -138968577 + (GAA)n Simple_repeat Simple_repeat 1 213 0 2 712 478 213 139 89 chr4 16661543 16661701 -138968419 - MurERV4-int LTR ERVK -5069 191 22 2 712 1476 230 94 15 chr4 16661708 16662211 -138967909 - RMER4B LTR ERVK 0 585 18 2 712 362 238 101 120 chr4 16662213 16662529 -138967591 + Lx7 LINE L1 7364 7673 -23 1 712 23 33 0 0 chr4 16662530 16662560 -138967560 + AT_rich Low_complexity Low_complexity 1 30 0 2 712 315 0 0 0 chr4 16662846 16662881 -138967239 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 2 712 1603 236 28 36 chr4 16663685 16664093 -138966027 + MTD LTR MaLR 12 405 -14 2 712 350 287 78 35 chr4 16664116 16664257 -138965863 - MLT1B LTR MaLR -16 374 228 2 712 337 363 43 37 chr4 16664715 16664878 -138965242 - L2c LINE L2 -246 3141 2978 2 712 2646 193 35 14 chr4 16665214 16665729 -138964391 - Lx3C LINE L1 -2 6974 6449 2 712 3015 168 29 83 chr4 16665978 16666333 -138963787 + RLTR17 LTR ERVK 98 421 -271 2 712 4981 64 37 3 chr4 16666333 16667003 -138963117 + L1_Mus2 LINE L1 5874 6566 0 2 712 2888 171 30 84 chr4 16667003 16667276 -138962844 + RLTR17 LTR ERVK 422 692 0 2 712 715 214 71 33 chr4 16667871 16668055 -138962065 - Lx8 LINE L1 -336 7137 6947 2 712 762 300 43 18 chr4 16668053 16668335 -138961785 + Lx8 LINE L1 6655 6943 -530 2 712 265 195 96 0 chr4 16669742 16669835 -138960285 + Lx5 LINE L1 874 969 -6117 2 712 1431 103 16 24 chr4 16669836 16670092 -138960028 - RLTR27 LTR ERVK 0 309 20 2 712 19656 170 79 17 chr4 16670095 16670542 -138959578 + Lx5 LINE L1 975 1447 -4430 2 712 3000 87 10 0 chr4 16670542 16670957 -138959163 + BGLII LTR ERVK 1 419 -2 2 712 19656 180 60 43 chr4 16670957 16671403 -138958717 + Lx5 LINE L1 1448 1917 -3960 2 712 216 0 0 0 chr4 16671403 16671427 -138958693 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 712 19656 180 60 43 chr4 16671427 16671828 -138958292 + Lx5 LINE L1 1918 2289 -3588 2 712 4049 131 39 41 chr4 16671828 16672579 -138957541 - RMER17A LTR ERVK 0 751 3 2 712 19656 186 60 42 chr4 16672579 16676720 -138953400 + Lx5 LINE L1 2290 6582 -2 2 712 2561 248 82 25 chr4 16676873 16677597 -138952523 + Lx5 LINE L1 6301 7047 -3 2 712 631 274 125 12 chr4 16677725 16678210 -138951910 - L1M3 LINE L1 -615 5688 5108 2 712 409 362 43 82 chr4 16678211 16678515 -138951605 - ORR1E LTR MaLR -67 292 1 2 712 1413 313 59 17 chr4 16678515 16678974 -138951146 - MTE-int LTR MaLR -53 1527 1049 2 712 378 107 0 0 chr4 16679222 16679278 -138950842 + (CTTA)n Simple_repeat Simple_repeat 3 58 0 2 712 760 43 216 9 chr4 16679282 16679398 -138950722 - B1_Mm SINE Alu -6 141 2 2 712 323 374 63 43 chr4 16679560 16679909 -138950211 - MTE-int LTR MaLR -891 689 334 2 712 227 277 0 11 chr4 16680018 16680113 -138950007 - L1M3 LINE L1 -2959 3181 3088 2 712 986 308 137 8 chr4 16680311 16680668 -138949452 + MTD LTR MaLR 3 405 -14 2 712 296 281 143 7 chr4 16681187 16681221 -138948899 - L1M3 LINE L1 -3800 2343 2310 2 712 441 0 0 0 chr4 16681221 16681270 -138948850 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 712 296 281 143 7 chr4 16681270 16681375 -138948745 - L1M3 LINE L1 -3834 2309 2186 2 712 24 32 0 0 chr4 16681951 16681982 -138948138 + AT_rich Low_complexity Low_complexity 1 31 0 2 712 198 0 0 0 chr4 16682028 16682050 -138948070 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 712 239 329 13 0 chr4 16682380 16682459 -138947661 - L2a LINE L2 0 3426 3347 2 712 25 75 0 0 chr4 16683826 16683879 -138946241 + AT_rich Low_complexity Low_complexity 1 53 0 2 712 359 383 34 30 chr4 16684114 16684348 -138945772 + ORR1E LTR MaLR 1 235 -124 2 712 714 249 75 8 chr4 16684402 16684641 -138945479 + Lx9 LINE L1 7329 7583 -61 2 712 27 29 0 0 chr4 16684917 16684951 -138945169 + AT_rich Low_complexity Low_complexity 1 34 0 2 712 14680 131 20 15 chr4 16685531 16688630 -138941490 + L1VL2 LINE L1 179 3264 -434 2 712 276 30 0 0 chr4 16688630 16688663 -138941457 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 712 14680 118 21 6 chr4 16688663 16688802 -138941318 + L1VL2 LINE L1 3265 3417 -281 2 712 519 211 35 0 chr4 16688802 16688916 -138941204 + L1M2 LINE L1 3655 3772 -2371 2 712 8865 167 28 26 chr4 16688916 16689439 -138940681 + L1_Mus3 LINE L1 2972 3481 -2402 2 712 267 31 0 0 chr4 16689439 16689471 -138940649 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 712 8865 167 28 26 chr4 16689471 16690781 -138939339 + L1_Mus3 LINE L1 3482 4809 -1074 2 712 2710 112 27 2 chr4 16690781 16691003 -138939117 + BGLII LTR ERVK 1 224 -197 2 712 630 0 0 0 chr4 16691003 16691073 -138939047 + (GGA)n Simple_repeat Simple_repeat 2 71 0 2 712 2710 112 27 2 chr4 16691073 16691261 -138938859 + BGLII LTR ERVK 225 419 -2 2 712 622 231 77 50 chr4 16691308 16691568 -138938552 + RMER3D-int LTR ERVK 669 935 -1907 2 712 524 151 23 44 chr4 16691562 16691715 -138938405 + RMER3D-int LTR ERVK 459 583 -2259 2 712 585 114 51 51 chr4 16691743 16691919 -138938201 + GA-rich Low_complexity Low_complexity 1 176 0 2 712 2023 170 106 16 chr4 16691948 16692443 -138937677 + RMER3D-int LTR ERVK 1015 1533 -1309 2 712 440 230 95 54 chr4 16692483 16692630 -138937490 + RMER3D-int LTR ERVK 1541 1693 -1149 2 712 3105 219 33 45 chr4 16692617 16693560 -138936560 + RMER3D-int LTR ERVK 1910 2841 -1 2 712 2716 109 17 5 chr4 16693561 16693977 -138936143 + BGLII LTR ERVK 1 421 0 2 712 6677 123 77 6 chr4 16693977 16695658 -138934462 + L1_Mus3 LINE L1 4804 6636 -2 2 712 3700 54 0 36 chr4 16695954 16696470 -138933650 - L1_Mus1 LINE L1 0 6567 6084 2 712 446 290 76 0 chr4 16696522 16696653 -138933467 + B1_Mur2 SINE Alu 9 149 0 2 712 461 84 0 14 chr4 16696666 16696738 -138933382 + (GGGAGA)n Simple_repeat Simple_repeat 3 73 0 2 712 258 270 108 23 chr4 16698213 16698342 -138931778 + L1MEe LINE L1 587 726 -4128 2 712 342 0 0 0 chr4 16698661 16698699 -138931421 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 712 18308 84 2 11 chr4 16698705 16701983 -138928137 - L1Md_F2 LINE L1 -5 6577 3326 2 712 6679 140 50 1 chr4 16701973 16703040 -138927080 - L1Md_F2 LINE L1 -5390 1226 108 2 712 310 241 60 0 chr4 16703065 16703148 -138926972 - L1M5 LINE L1 -3161 2985 2898 2 712 462 304 11 4 chr4 16703926 16704062 -138926058 + Lx5 LINE L1 6189 6351 -699 2 712 41214 5 0 0 chr4 16704287 16710863 -138919257 - L1Md_A LINE L1 0 6582 7 2 712 494 16 16 0 chr4 16710921 16710984 -138919136 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 712 511 337 95 16 chr4 16711011 16711264 -138918856 - B4 SINE B4 -18 274 2 2 712 267 245 28 101 chr4 16711266 16711375 -138918745 + MLT1A1 LTR MaLR 302 402 -6 2 712 183 80 0 0 chr4 16711796 16711821 -138918299 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 2 712 33976 26 0 0 chr4 16712013 16716069 -138914051 + L1Md_T LINE L1 1531 5586 -297 2 712 8336 36 0 0 chr4 16716070 16717063 -138913057 + L1Md_T LINE L1 5588 6580 -2 2 712 26 0 0 0 chr4 16717079 16717105 -138913015 + AT_rich Low_complexity Low_complexity 1 26 0 2 712 344 376 61 0 chr4 16717759 16717940 -138912180 - MER46C DNA MER2_type -16 322 131 2 712 27 0 0 0 chr4 16718126 16718153 -138911967 + AT_rich Low_complexity Low_complexity 1 27 0 2 712 765 281 50 36 chr4 16719137 16719472 -138910648 + ORR1D1 LTR MaLR 6 370 0 2 712 5204 224 65 53 chr4 16720499 16721215 -138908905 + Lx5 LINE L1 907 1553 -4324 2 712 1561 165 14 3 chr4 16721215 16721507 -138908613 + Lx LINE L1 6357 6651 -3 2 712 5204 211 89 37 chr4 16721504 16722656 -138907464 + Lx5 LINE L1 1536 2782 -3095 2 712 1131 193 176 0 chr4 16722666 16722967 -138907153 - L1_Mur3 LINE L1 -2028 3852 3499 2 712 2987 255 31 11 chr4 16722974 16724148 -138905972 + Lx5 LINE L1 5138 6348 -702 2 712 263 121 0 17 chr4 16724435 16724494 -138905626 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 2 712 356 0 23 0 chr4 16724749 16724793 -138905327 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2 712 183 42 0 0 chr4 16725053 16725077 -138905043 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 712 2814 51 2 58 chr4 16725241 16725663 -138904457 - L1_Mus1 LINE L1 0 6567 6184 2 712 21 0 0 0 chr4 16725849 16725870 -138904250 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 22 0 0 0 chr4 16726602 16726624 -138903496 + AT_rich Low_complexity Low_complexity 1 22 0 2 712 2286 31 10 24 chr4 16726810 16727104 -138903016 + L1Md_F2 LINE L1 6282 6571 -11 2 712 344 260 6 14 chr4 16727238 16727355 -138902765 + L1MA4A LINE L1 5768 5907 -396 2 712 204 40 0 0 chr4 16727369 16727394 -138902726 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 712 318 67 0 0 chr4 16728349 16728394 -138901726 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 2 712 525 225 34 61 chr4 16728394 16728541 -138901579 - B1_Mur4 SINE Alu -6 144 2 2 712 1908 189 8 6 chr4 16729433 16729795 -138900325 - Lx2A1 LINE L1 -4 7004 6642 2 712 2788 211 6 4 chr4 16729798 16730321 -138899799 + Lx2 LINE L1 6092 6615 -382 2 712 1469 212 181 14 chr4 16730377 16730808 -138899312 + L1_Rod LINE L1 5251 5753 -94 2 712 1064 244 4 16 chr4 16730814 16731060 -138899060 - RMER19B LTR ERVK 0 902 660 2 712 2434 243 54 18 chr4 16731080 16731696 -138898424 + Lx9 LINE L1 6364 7001 -643 2 712 40009 20 2 6 chr4 16731885 16738143 -138891977 - L1Md_A LINE L1 -3 6579 353 2 712 1391 224 60 0 chr4 16738249 16738598 -138891522 - Lx9 LINE L1 -10 7634 7265 2 712 187 231 19 19 chr4 16738606 16738659 -138891461 + L2 LINE L2 2775 2827 -592 2 712 199 316 55 19 chr4 16738657 16738796 -138891324 + MIRc SINE MIR 14 156 -112 2 712 562 212 14 32 chr4 16738978 16739117 -138891003 - Lx9 LINE L1 -517 7127 6919 2 712 342 0 0 0 chr4 16739133 16739171 -138890949 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 712 386 335 114 26 chr4 16739485 16739712 -138890408 - Lx9 LINE L1 -1076 6568 6322 2 712 270 56 0 0 chr4 16739716 16739752 -138890368 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 712 468 0 0 0 chr4 16739752 16739803 -138890317 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 712 570 306 58 58 chr4 16739893 16740188 -138889932 - Lx9 LINE L1 -1639 6057 5763 2 712 742 308 47 70 chr4 16740272 16740556 -138889564 + L1MA8 LINE L1 5616 5908 -383 2 712 522 304 34 5 chr4 16740556 16740761 -138889359 - B3 SINE B2 -4 212 2 2 712 742 308 47 70 chr4 16740761 16741186 -138888934 + L1MA8 LINE L1 5909 6291 0 2 712 7362 221 28 41 chr4 16741392 16744341 -138885779 - Lx4B LINE L1 -19 6981 4050 2 712 543 235 14 57 chr4 16744930 16745070 -138885050 + RMER20B LTR ERVK 1 134 -493 2 712 199 150 33 0 chr4 16748381 16748441 -138881679 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 712 23 0 0 0 chr4 16750008 16750031 -138880089 + AT_rich Low_complexity Low_complexity 1 23 0 2 712 343 202 0 37 chr4 16750444 16750526 -138879594 - RLTR6-int LTR ERV1 -87 7691 7613 2 712 309 146 0 0 chr4 16750498 16750553 -138879567 - RLTR1B-int LTR ERV1 -80 3219 3165 2 712 257 96 94 19 chr4 16750912 16750965 -138879155 + MMVL30-int LTR ERV1 772 828 -2870 2 712 372 227 0 112 chr4 16751048 16751182 -138878938 + MMVL30-int LTR ERV1 844 962 -2736 2 712 529 204 42 42 chr4 16751341 16751484 -138878636 + MMVL30-int LTR ERV1 1349 1491 -2207 2 712 482 0 0 17 chr4 16751511 16751570 -138878550 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 2 712 285 158 0 0 chr4 16751880 16751937 -138878183 + MMVL30-int LTR ERV1 1455 1511 -2187 2 712 222 191 0 0 chr4 16752003 16752045 -138878075 + GA-rich Low_complexity Low_complexity 3 44 0 2 712 1011 106 0 0 chr4 16752050 16752201 -138877919 + (GGGAGA)n Simple_repeat Simple_repeat 4 154 0 2 712 257 254 0 0 chr4 16752268 16752327 -138877793 + B1F2 SINE Alu 1 59 -90 3 712 226 293 13 13 chr4 16752327 16752341 -138877779 + ID_B1 SINE B4 82 154 -70 3 712 1374 186 22 23 chr4 16752345 16752674 -138877446 + MMVL30-int LTR ERV1 1516 2065 -5541 2 712 3766 252 31 52 chr4 16752682 16754320 -138875800 + MMVL30-int LTR ERV1 2877 5391 -2387 2 712 498 0 0 0 chr4 16754320 16754382 -138875738 + L1Md_T LINE L1 6521 6582 0 3 712 3766 175 7 62 chr4 16754382 16754471 -138875649 + MMVL30-int LTR ERV1 3523 3602 -96 2 712 297 248 185 34 chr4 16754457 16754603 -138875517 + RLTR6-int LTR ERV1 7610 7777 -1 3 712 243 103 0 0 chr4 16754737 16754776 -138875344 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 712 357 319 87 61 chr4 16754854 16755118 -138875002 + RLTR41 LTR ERV1 176 446 0 3 712 193 57 57 0 chr4 16756189 16756224 -138873896 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 3 712 958 253 36 16 chr4 16756394 16756643 -138873477 - RLTR18B LTR ERVK -2 510 257 3 712 1096 212 42 128 chr4 16756649 16757085 -138873035 - RMER19C LTR ERVK -356 381 1 3 712 300 294 132 56 chr4 16757603 16757837 -138872283 - Lx8 LINE L1 -2 7471 7220 3 712 21 36 0 0 chr4 16758039 16758067 -138872053 + AT_rich Low_complexity Low_complexity 1 28 0 3 712 5064 150 31 8 chr4 16758157 16759036 -138871084 + Lx3B LINE L1 6072 6970 -3 3 712 450 0 0 0 chr4 16759047 16759097 -138871023 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 712 30219 105 19 8 chr4 16759151 16764460 -138865660 + L1Md_F2 LINE L1 231 5586 -297 3 712 7499 74 6 3 chr4 16764461 16765453 -138864667 + L1Md_F2 LINE L1 5588 6582 0 3 712 844 289 42 100 chr4 16765453 16766130 -138863990 + Lx9 LINE L1 5320 6004 -1640 3 712 712 318 33 38 chr4 16766155 16766577 -138863543 + Lx9 LINE L1 6730 7149 -495 3 712 5865 66 13 0 chr4 16766984 16767758 -138862362 - L1Md_F3 LINE L1 -14 6570 5787 3 712 412 22 0 0 chr4 16767758 16767804 -138862316 + L1Md_A LINE L1 5541 5586 -297 3 712 8459 31 0 0 chr4 16767804 16768799 -138861321 + L1Md_A LINE L1 5587 6581 -1 3 712 16991 78 4 3 chr4 16768814 16771839 -138858281 - L1Md_A LINE L1 -2486 3397 413 3 712 2901 134 38 94 chr4 16771862 16771881 -138858239 + RMER17A2 LTR ERVK 256 274 -632 3 712 4182 97 3 7 chr4 16771881 16772474 -138857646 + L1Md_F2 LINE L1 5981 6571 -11 3 712 2901 134 38 94 chr4 16772474 16773144 -138856976 + RMER17A2 LTR ERVK 275 905 -1 3 712 49 60 0 0 chr4 16773364 16773448 -138856672 + AT_rich Low_complexity Low_complexity 1 84 0 3 712 528 167 18 18 chr4 16773450 16773560 -138856560 + Lx LINE L1 6252 6361 -293 3 712 225 293 35 58 chr4 16774136 16774223 -138855897 + L2c LINE L2 3268 3352 -35 3 712 458 264 16 40 chr4 16774772 16774898 -138855222 - ID_B1 SINE B4 -2 222 100 3 712 207 219 0 0 chr4 16775641 16775682 -138854438 + L3 LINE CR1 4306 4346 -143 3 712 304 333 94 29 chr4 16776685 16776855 -138853265 + B3 SINE B2 2 182 -34 3 712 450 53 0 0 chr4 16776871 16776928 -138853192 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1 7473 128 19 8 chr4 16776968 16777700 -138852420 - L1_Mus4 LINE L1 -626 6010 5291 3 713 1518 35 0 0 chr4 16777700 16777874 -138852246 + B2_Mm1a SINE B2 2 175 -18 3 713 7473 163 39 19 chr4 16777874 16778660 -138851460 - L1_Mus4 LINE L1 -593 5290 4464 3 713 888 101 65 0 chr4 16781082 16781220 -138848900 - B1_Mus2 SINE Alu 0 147 1 3 713 203 324 104 38 chr4 16781337 16781443 -138848677 - MIR SINE MIR -119 143 31 3 713 26 50 0 0 chr4 16781896 16781936 -138848184 + AT_rich Low_complexity Low_complexity 1 40 0 3 713 2659 147 28 0 chr4 16782230 16782660 -138847460 - Lx3C LINE L1 -7 6969 6528 3 713 1114 123 0 39 chr4 16782660 16782838 -138847282 + Lx3C LINE L1 6341 6511 -465 3 713 36 0 0 0 chr4 16783097 16783133 -138846987 + AT_rich Low_complexity Low_complexity 1 36 0 3 713 273 57 0 0 chr4 16783232 16783267 -138846853 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 713 27 0 0 0 chr4 16783482 16783509 -138846611 + AT_rich Low_complexity Low_complexity 1 27 0 3 713 323 274 0 0 chr4 16783524 16783597 -138846523 - RSINE1 SINE B4 -90 75 3 3 713 234 349 12 0 chr4 16783778 16783861 -138846259 - B4 SINE B4 0 292 209 3 713 5305 131 63 48 chr4 16783862 16785162 -138844958 - L1_Mus2 LINE L1 0 6566 5236 3 713 573 15 0 0 chr4 16785162 16785228 -138844892 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 713 5266 147 23 1 chr4 16785228 16785476 -138844644 - L1_Mus2 LINE L1 -648 5235 4988 3 713 16820 116 9 12 chr4 16785471 16788569 -138841551 - L1Md_F2 LINE L1 -1 6581 3478 3 713 309 89 0 0 chr4 16788569 16788614 -138841506 + (TTG)n Simple_repeat Simple_repeat 1 45 0 3 713 16820 123 6 8 chr4 16788614 16788834 -138841286 - L1Md_F2 LINE L1 -2406 3477 3258 3 713 659 142 9 0 chr4 16788835 16788941 -138841179 - U6 snRNA snRNA 0 107 1 3 713 560 135 0 0 chr4 16788941 16789030 -138841090 - 4.5SRNA scRNA scRNA -5 89 1 3 713 2138 149 60 3 chr4 16789246 16789629 -138840491 - Lx3_Mus LINE L1 -11 6998 6594 3 713 531 292 40 7 chr4 16789630 16789778 -138840342 + ETnERV2-int LTR ERVK 7070 7222 -184 3 713 330 292 34 20 chr4 16790320 16790467 -138839653 + RMER16-int LTR ERVK 181 329 -6915 3 713 2045 173 150 43 chr4 16790649 16791163 -138838957 + RMER16-int LTR ERVK 251 819 -4587 3 713 437 193 128 0 chr4 16791168 16791277 -138838843 + RMER16-int LTR ERVK 938 1060 -5077 3 713 791 186 98 6 chr4 16791355 16791528 -138838592 + ETnERV3-int LTR ERVK 2565 2753 -4653 3 713 1246 134 30 7 chr4 16791572 16791941 -138838179 + ETnERV3-int LTR ERVK 3761 4188 -3218 3 713 190 273 87 39 chr4 16791941 16792044 -138838076 - L4 LINE RTE -1231 798 691 3 713 4606 184 76 57 chr4 16792044 16793267 -138836853 + ETnERV3-int LTR ERVK 4141 5386 -422 3 713 869 271 9 4 chr4 16793258 16793592 -138836528 + ETnERV3-int LTR ERVK 7506 7748 -469 3 713 4333 176 23 1 chr4 16793648 16794338 -138835782 + ETnERV3-int LTR ERVK 6498 7202 -204 3 713 1770 165 6 4 chr4 16794715 16795038 -138835082 - Lx3_Mus LINE L1 -410 6599 6266 3 713 341 371 0 0 chr4 16795400 16795551 -138834569 - Lx7 LINE L1 -384 7312 7162 3 713 184 322 152 44 chr4 16795602 16795872 -138834248 + L2 LINE L2 1863 2161 -1258 3 713 21 36 0 0 chr4 16796965 16796993 -138833127 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 213 220 0 0 chr4 16797504 16797554 -138832566 + A-rich Low_complexity Low_complexity 2 51 0 3 713 261 156 39 0 chr4 16797969 16798046 -138832074 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 713 1050 129 0 0 chr4 16798096 16798133 -138831987 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 713 1170 117 0 0 chr4 16798133 16798312 -138831808 + (CATA)n Simple_repeat Simple_repeat 2 180 0 3 713 1050 129 0 0 chr4 16798312 16798444 -138831676 + (TA)n Simple_repeat Simple_repeat 2 133 0 3 713 375 23 0 0 chr4 16798468 16798512 -138831608 + (ATTAG)n Simple_repeat Simple_repeat 5 48 0 3 713 332 21 64 0 chr4 16798765 16798812 -138831308 + (ATATG)n Simple_repeat Simple_repeat 2 51 0 3 713 384 22 0 0 chr4 16799222 16799267 -138830853 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 3 713 1371 211 57 25 chr4 16799562 16800012 -138830108 - L1_Mur3 LINE L1 -1911 3969 3527 3 713 234 91 0 0 chr4 16800012 16800045 -138830075 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 713 1235 225 8 50 chr4 16800045 16800418 -138829702 - L1_Mur3 LINE L1 -2315 3562 3274 3 713 21 36 0 0 chr4 16800424 16800452 -138829668 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 3674 272 33 6 chr4 16800478 16801454 -138828666 + Lx7 LINE L1 5940 6941 -755 3 713 1313 295 42 20 chr4 16801467 16802020 -138828100 + Lx7 LINE L1 7124 7688 -8 3 713 1038 93 7 0 chr4 16802827 16802967 -138827153 + B1_Mus1 SINE Alu 2 142 -6 3 713 249 33 0 0 chr4 16802984 16803014 -138827106 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 713 333 274 18 70 chr4 16803236 16803350 -138826770 + Lx8 LINE L1 6198 6305 -1168 3 713 23 0 0 0 chr4 16803383 16803406 -138826714 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 217 361 0 40 chr4 16804780 16804855 -138825265 + L2b LINE L2 3268 3339 -36 3 713 320 0 25 0 chr4 16804949 16804989 -138825131 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3 713 1498 262 84 10 chr4 16805475 16805891 -138824229 + RMER20A LTR ERVK 1 447 -69 3 713 267 48 0 19 chr4 16805911 16805964 -138824156 - L1Md_F2 LINE L1 -1 6583 6531 3 713 4410 12 2 0 chr4 16805964 16806456 -138823664 + MT2_Mm LTR ERVL 1 493 0 3 713 40367 17 14 0 chr4 16806456 16811742 -138818378 + MERVL-int LTR ERVL 1 5360 -125 3 713 392 167 46 35 chr4 16811742 16811829 -138818291 + ORR1A3-int LTR MaLR 553 640 -1323 3 713 314 0 0 0 chr4 16811829 16811867 -138818253 + MERVL-int LTR ERVL 5448 5485 0 3 713 4410 12 2 0 chr4 16811867 16812359 -138817761 + MT2_Mm LTR ERVL 1 493 0 3 713 811 64 0 0 chr4 16812359 16812468 -138817652 - L1Md_F2 LINE L1 -46 6536 6428 3 713 36459 31 1 7 chr4 16812805 16817838 -138812282 + L1Md_T LINE L1 593 5585 -298 3 713 8346 37 0 0 chr4 16817839 16818832 -138811288 + L1Md_T LINE L1 5587 6579 -3 3 713 1599 92 9 0 chr4 16820394 16820622 -138809498 - L1Md_F2 LINE L1 -2 6580 6351 3 713 35 0 0 0 chr4 16820691 16820726 -138809394 + AT_rich Low_complexity Low_complexity 1 35 0 3 713 201 250 18 0 chr4 16820950 16821006 -138809114 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 713 722 84 9 0 chr4 16821456 16821563 -138808557 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 3 713 1002 62 0 0 chr4 16821630 16821760 -138808360 + (TC)n Simple_repeat Simple_repeat 1 130 0 3 713 396 88 0 0 chr4 16821760 16821816 -138808304 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 713 712 207 20 7 chr4 16821850 16821996 -138808124 - B1_Mus1 SINE Alu 0 148 1 3 713 26 0 0 0 chr4 16822736 16822762 -138807358 + AT_rich Low_complexity Low_complexity 1 26 0 3 713 1053 256 33 56 chr4 16822762 16823064 -138807056 - Lx6 LINE L1 -10 7450 7156 3 713 4420 234 65 40 chr4 16823050 16824521 -138805599 - Lx6 LINE L1 -615 6845 5352 3 713 1358 77 6 0 chr4 16824513 16824695 -138805425 - L1_Mus2 LINE L1 -297 6269 6087 3 713 1222 102 80 4 chr4 16824692 16824934 -138805186 + L1_Mus2 LINE L1 6294 6579 -3 3 713 435 252 9 0 chr4 16824997 16825108 -138805012 + L1_Mur3 LINE L1 2413 2524 -3356 3 713 2053 192 5 2 chr4 16825096 16825493 -138804627 + Lx LINE L1 4477 4874 -1009 3 713 32287 95 12 6 chr4 16825508 16831533 -138798587 - L1Md_F2 LINE L1 -2 6580 515 3 713 7048 152 7 4 chr4 16831533 16833317 -138796803 + Lx LINE L1 4863 6654 0 3 713 2323 207 33 36 chr4 16833368 16834006 -138796114 + L1_Mur3 LINE L1 3047 3682 -2198 3 713 719 277 93 40 chr4 16834452 16834700 -138795420 + RodERV21-int LTR ERV1 19 279 -4712 3 713 1027 105 7 0 chr4 16834725 16834868 -138795252 - B1_Mm SINE Alu -2 145 2 3 713 754 259 29 102 chr4 16834925 16835269 -138794851 + RodERV21-int LTR ERV1 251 569 -4422 3 713 2252 262 96 36 chr4 16835425 16836662 -138793458 + RodERV21-int LTR ERV1 1400 2711 -2280 3 713 3022 79 12 0 chr4 16836925 16837330 -138792790 + L1_Mus1 LINE L1 6157 6566 -1 3 713 1090 237 116 77 chr4 16837438 16838094 -138792026 + RLTR19-int LTR ERVK 3387 4031 -2106 3 713 916 273 33 72 chr4 16838126 16838485 -138791635 + RLTR19-int LTR ERVK 4037 4381 -1756 3 713 1191 254 100 42 chr4 16838718 16839079 -138791041 + RodERV21-int LTR ERV1 4440 4821 -170 3 713 274 329 12 12 chr4 16839084 16839164 -138790956 + RMER4B LTR ERVK 353 432 -153 3 713 1588 198 45 13 chr4 16839310 16839622 -138790498 - ORR1A4 LTR MaLR -7 322 1 3 713 5529 193 125 20 chr4 16839866 16840609 -138789511 + L1_Mur3 LINE L1 3689 4568 -1312 3 713 2870 34 6 3 chr4 16840609 16840964 -138789156 + L1Md_F2 LINE L1 6226 6581 -1 3 713 5529 193 125 20 chr4 16840964 16841728 -138788392 + L1_Mur3 LINE L1 4569 5353 -527 3 713 4721 176 23 19 chr4 16841751 16842716 -138787404 - Lx4B LINE L1 -539 6519 5541 3 713 2443 224 5 58 chr4 16842716 16843284 -138786836 + Lx4B LINE L1 6512 7049 -9 3 713 216 0 0 0 chr4 16843523 16843547 -138786573 + (A)n Simple_repeat Simple_repeat 1 24 0 3 713 3257 181 58 14 chr4 16843547 16844181 -138785939 - RLTR17 LTR ERVK -16 676 15 3 713 330 326 88 57 chr4 16844360 16844552 -138785568 + MER63A DNA AcHobo 13 210 0 4 713 335 280 13 0 chr4 16846235 16846310 -138783810 - ID4 SINE ID -5 78 3 4 713 2895 46 2 78 chr4 16846823 16847245 -138782875 + RLTR10 LTR ERVK 1 390 0 4 713 900 272 89 82 chr4 16847453 16847857 -138782263 + MTD LTR MaLR 1 396 -23 4 713 306 286 75 133 chr4 16847880 16848148 -138781972 - MLT1A0 LTR MaLR -51 323 63 4 713 2049 273 101 10 chr4 16848781 16849474 -138780646 - Lx7 LINE L1 -174 7522 6767 4 713 38 22 0 0 chr4 16849996 16850041 -138780079 + AT_rich Low_complexity Low_complexity 1 45 0 4 713 965 331 51 6 chr4 16850170 16850493 -138779627 - ORR1E-int LTR MaLR -218 1362 1025 4 713 245 169 0 0 chr4 16850493 16850552 -138779568 - MT2A LTR ERVL 0 533 475 4 713 1099 346 107 33 chr4 16850622 16850908 -138779212 - ORR1E-int LTR MaLR -553 1027 729 4 713 296 64 0 21 chr4 16850908 16850956 -138779164 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 713 1099 346 107 33 chr4 16850956 16851303 -138778817 - ORR1E-int LTR MaLR -852 728 347 4 713 416 316 97 48 chr4 16851376 16851562 -138778558 - ORR1E-int LTR MaLR -1381 199 5 4 713 565 346 83 43 chr4 16851565 16851891 -138778229 - ORR1E LTR MaLR -17 342 4 4 713 21 36 0 0 chr4 16851893 16851921 -138778199 + AT_rich Low_complexity Low_complexity 1 28 0 4 713 702 367 60 20 chr4 16852375 16852723 -138777397 - MLT2B4 LTR ERVL -178 378 17 4 713 463 234 0 0 chr4 16853037 16853114 -138777006 + RSINE1 SINE B4 3 79 -86 4 713 287 341 22 0 chr4 16853114 16853128 -138776992 + B3A SINE B2 2 94 -104 4 713 2623 66 30 24 chr4 16853762 16854133 -138775987 + L1Md_F2 LINE L1 6210 6582 0 4 713 3390 111 109 80 chr4 16854269 16855033 -138775087 - RMER17D2 LTR ERVK -4 805 20 4 713 1208 337 8 32 chr4 16855037 16855058 -138775062 - Lx9 LINE L1 -664 6980 6962 4 713 2097 197 155 21 chr4 16855058 16855666 -138774454 - RMER6C LTR ERVK -1 689 1 4 713 1208 337 8 32 chr4 16855666 16855916 -138774204 - Lx9 LINE L1 -683 6961 6722 4 713 1398 74 39 5 chr4 16855916 16856121 -138773999 - L1_Mus1 LINE L1 0 6567 6356 4 713 1208 337 8 32 chr4 16856121 16856373 -138773747 - Lx9 LINE L1 -923 6721 6469 4 713 189 0 0 0 chr4 16856594 16856615 -138773505 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 713 182 236 73 0 chr4 16857847 16857902 -138772218 - L4 LINE RTE -515 1514 1456 4 713 268 320 98 10 chr4 16857968 16858173 -138771947 - L1M5 LINE L1 -381 5798 5576 4 713 251 301 31 48 chr4 16858232 16858364 -138771756 - B3A SINE B2 -11 205 65 4 713 30 45 0 0 chr4 16858487 16858531 -138771589 + AT_rich Low_complexity Low_complexity 1 44 0 4 713 21 0 0 0 chr4 16858678 16858699 -138771421 + AT_rich Low_complexity Low_complexity 1 21 0 4 713 307 319 54 42 chr4 16858956 16859195 -138770925 - L1M5 LINE L1 -1497 4649 4408 4 713 577 286 84 23 chr4 16859947 16860162 -138769958 + RMER15 LTR ERVL 336 563 -12 4 713 208 250 0 0 chr4 16861079 16861135 -138768985 + T-rich Low_complexity Low_complexity 1 56 0 4 713 186 43 0 0 chr4 16861140 16861163 -138768957 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 713 405 293 25 33 chr4 16862021 16862141 -138767979 + B4A SINE B4 106 224 -68 4 713 294 29 0 0 chr4 16862147 16862182 -138767938 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 713 309 279 155 65 chr4 16862584 16862894 -138767226 + BLACKJACK DNA AcHobo 686 1023 -1921 4 713 291 228 38 0 chr4 16862911 16862990 -138767130 - Lx6 LINE L1 0 7460 7379 4 713 244 196 135 111 chr4 16862990 16863116 -138767004 - U2 snRNA snRNA -59 129 1 4 713 258 88 0 0 chr4 16863986 16864020 -138766100 + U2 snRNA snRNA 1 34 -154 4 713 571 242 31 19 chr4 16864031 16864191 -138765929 + Lx6 LINE L1 7299 7460 0 4 713 398 305 344 38 chr4 16865529 16865876 -138764244 - RMER15 LTR ERVL -114 461 9 4 713 665 286 24 9 chr4 16866560 16866772 -138763348 + ID_B1 SINE B4 2 216 -8 4 713 180 163 0 0 chr4 16866850 16866893 -138763227 + A-rich Low_complexity Low_complexity 1 43 0 4 713 444 123 0 0 chr4 16866921 16866994 -138763126 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 713 180 0 0 0 chr4 16866994 16867013 -138763107 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 713 207 0 0 0 chr4 16867013 16867035 -138763085 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 713 302 184 13 0 chr4 16867167 16867243 -138762877 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 713 181 0 0 65 chr4 16867378 16867409 -138762711 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 713 1318 91 32 0 chr4 16867593 16867780 -138762340 - B2_Mm2 SINE B2 -2 193 1 4 713 1035 92 35 0 chr4 16868134 16868276 -138761844 + B1_Mm SINE Alu 1 147 0 4 713 216 0 0 0 chr4 16868276 16868300 -138761820 + (A)n Simple_repeat Simple_repeat 1 24 0 4 713 477 0 0 0 chr4 16868423 16868476 -138761644 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 713 270 81 0 0 chr4 16869020 16869057 -138761063 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 4 713 600 265 191 25 chr4 16869512 16870049 -138760071 - L1MA9 LINE L1 -91 6221 5591 4 713 263 301 63 31 chr4 16870127 16870254 -138759866 - L1M3c LINE L1 -5845 296 166 4 713 492 185 0 0 chr4 16871358 16871466 -138758654 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 713 218 358 9 60 chr4 16871541 16871657 -138758463 - PB1D10 SINE Alu -7 110 1 4 713 555 279 16 0 chr4 16871657 16871698 -138758422 - B4A SINE B4 -206 86 44 4 713 200 299 108 49 chr4 16871909 16872011 -138758109 + L2a LINE L2 3303 3410 -16 4 713 1174 117 6 11 chr4 16873893 16873915 -138756205 - B2_Mm1t SINE B2 -12 181 161 4 713 195 42 0 0 chr4 16873915 16873939 -138756181 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 4 713 1174 117 6 11 chr4 16873939 16874098 -138756022 - B2_Mm1t SINE B2 -33 160 1 4 713 369 244 47 100 chr4 16874802 16874845 -138755275 - B4A SINE B4 -66 226 86 4 713 717 123 0 0 chr4 16874845 16874951 -138755169 - B1_Mus1 SINE Alu -42 106 1 4 713 339 298 15 22 chr4 16875188 16875322 -138754798 + Lx9 LINE L1 5842 5974 -1670 4 713 290 314 19 56 chr4 16875372 16875480 -138754640 + Lx9 LINE L1 6535 6638 -1006 4 713 1375 0 29 0 chr4 16875486 16875661 -138754459 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 713 264 292 20 20 chr4 16875801 16875899 -138754221 - MTEa LTR MaLR -4 375 278 4 713 441 72 34 67 chr4 16876078 16876197 -138753923 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 4 713 622 223 50 7 chr4 16876209 16876349 -138753771 - B1_Mus2 SINE Alu -1 146 1 4 713 4502 108 54 1 chr4 16876982 16877671 -138752449 - L1_Mus3 LINE L1 0 6638 5914 4 713 840 240 61 22 chr4 16878059 16878153 -138751967 + Lx5 LINE L1 6648 6738 -722 4 713 180 0 0 0 chr4 16878153 16878173 -138751947 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 713 936 296 37 23 chr4 16878173 16878521 -138751599 + Lx5 LINE L1 6457 6885 -575 4 713 339 165 47 16 chr4 16878521 16878598 -138751522 - Lx4B LINE L1 -439 6558 6481 4 713 328 40 0 39 chr4 16878630 16878682 -138751438 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 713 1052 66 0 0 chr4 16878938 16879075 -138751045 + B1_Mus2 SINE Alu 2 138 -9 4 713 285 51 0 0 chr4 16879075 16879114 -138751006 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 713 374 198 12 0 chr4 16879118 16879182 -138750938 + B2_Mm2 SINE B2 90 153 -42 4 713 522 46 0 0 chr4 16879182 16879247 -138750873 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 713 267 31 0 0 chr4 16879249 16879281 -138750839 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 713 374 198 12 0 chr4 16879281 16879299 -138750821 + B2_Mm2 SINE B2 154 171 -24 4 713 224 197 16 16 chr4 16880152 16880214 -138749906 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 713 1242 219 7 7 chr4 16880304 16880576 -138749544 - L1_Mur2 LINE L1 -6401 311 40 4 713 4022 141 75 46 chr4 16880575 16880821 -138749299 + L1_Mur2 LINE L1 4470 4731 -1146 4 713 1502 35 0 0 chr4 16880821 16880995 -138749125 + B2_Mm1a SINE B2 2 175 -18 4 713 4022 141 75 46 chr4 16880995 16881567 -138748553 + L1_Mur2 LINE L1 4732 5311 -566 4 713 4154 173 56 17 chr4 16881567 16882389 -138747731 - RLTR13D6 LTR ERVK -48 854 1 4 713 8263 90 11 1 chr4 16882400 16884063 -138746057 - L1_Mus2 LINE L1 -222 6344 4662 4 713 2645 36 147 0 chr4 16884087 16884447 -138745673 + MT2_Mm LTR ERVL 1 413 -80 4 713 4688 24 3 3 chr4 16884431 16885016 -138745104 + MTA_Mm-int LTR MaLR 514 1098 0 4 713 3510 13 5 0 chr4 16885016 16885410 -138744710 + MTA_Mm LTR MaLR 1 396 0 4 713 371 286 36 0 chr4 16885410 16885522 -138744598 + Lx4A LINE L1 6942 7057 -1 4 713 315 252 0 104 chr4 16885500 16885615 -138744505 - Lx9 LINE L1 -244 7400 7298 4 713 1539 262 51 97 chr4 16886232 16886955 -138743165 + RMER19C LTR ERVK 1 737 0 4 713 502 335 64 52 chr4 16887980 16888310 -138741810 - Charlie25 DNA MER1_type -880 1644 1311 4 713 206 373 0 43 chr4 16889260 16889330 -138740790 - L2b LINE L2 -286 3089 3023 4 713 225 0 0 0 chr4 16890202 16890227 -138739893 + (T)n Simple_repeat Simple_repeat 1 25 0 4 713 239 252 258 0 chr4 16890623 16890768 -138739352 - B3 SINE B2 0 216 35 4 713 1616 133 15 0 chr4 16890775 16891038 -138739082 - L1_Mus3 LINE L1 -4 6634 6368 4 713 2928 118 7 0 chr4 16891039 16891478 -138738642 + L1_Mus3 LINE L1 5850 6291 -345 4 713 223 302 29 86 chr4 16891478 16891583 -138738537 - B3A SINE B2 -98 100 2 4 713 235 333 26 0 chr4 16892034 16892148 -138737972 + L1M2c LINE L1 1625 1741 -5048 4 713 378 286 59 42 chr4 16893110 16893480 -138736640 + L1M2c LINE L1 6029 6406 -425 4 713 687 109 16 25 chr4 16894071 16894193 -138735927 + Lx LINE L1 6528 6648 -6 4 713 368 161 0 12 chr4 16894215 16894297 -138735823 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 713 22 0 0 0 chr4 16894616 16894638 -138735482 + AT_rich Low_complexity Low_complexity 1 22 0 4 713 21 71 0 0 chr4 16895289 16895331 -138734789 + AT_rich Low_complexity Low_complexity 1 42 0 4 713 5203 174 36 21 chr4 16895564 16896589 -138733531 + Lx2 LINE L1 5947 6986 -11 4 713 247 211 96 27 chr4 16896710 16896783 -138733337 + ZP3AR Satellite Satellite 133 210 -2 4 713 756 61 0 0 chr4 16896725 16896824 -138733296 + BC1_Mm scRNA scRNA 1 99 -53 4 713 252 86 0 0 chr4 16897009 16897044 -138733076 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 713 29 70 0 0 chr4 16897431 16897488 -138732632 + AT_rich Low_complexity Low_complexity 1 57 0 4 713 622 322 80 0 chr4 16897697 16897896 -138732224 + B4A SINE B4 15 229 -63 5 713 1175 270 100 13 chr4 16897901 16898431 -138731689 - L1_Mur3 LINE L1 -1398 4482 3907 5 713 221 320 10 10 chr4 16899798 16899902 -138730218 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 713 537 153 0 0 chr4 16899903 16900027 -138730093 + GA-rich Low_complexity Low_complexity 1 124 0 5 713 6370 52 19 2 chr4 16901044 16901854 -138728266 + L1Md_F2 LINE L1 5760 6582 0 5 713 742 201 124 10 chr4 16902502 16902703 -138727417 - URR1A DNA MER1_type -2 224 1 5 713 2417 199 38 38 chr4 16902781 16903340 -138726780 - RLTR31_Mm LTR ERVK 0 561 3 5 713 465 356 16 21 chr4 16903976 16904168 -138725952 + MLT1A0 LTR MaLR 3 193 -172 5 713 967 265 50 0 chr4 16904177 16904415 -138725705 + MMAR1 DNA Mariner 304 553 -733 5 713 928 52 28 34 chr4 16904455 16904634 -138725486 + (TTCTC)n Simple_repeat Simple_repeat 3 180 0 5 713 537 181 14 7 chr4 16904634 16904773 -138725347 + CT-rich Low_complexity Low_complexity 4 143 0 5 713 37 52 0 0 chr4 16904794 16904852 -138725268 + AT_rich Low_complexity Low_complexity 1 58 0 5 713 603 273 57 71 chr4 16905016 16905296 -138724824 + MMAR1 DNA Mariner 577 852 -434 5 713 458 201 125 15 chr4 16905306 16905442 -138724678 + MMAR1 DNA Mariner 1132 1282 -4 5 713 329 305 67 0 chr4 16905463 16905568 -138724552 + ID_B1 SINE B4 93 204 -20 5 713 333 0 0 0 chr4 16905628 16905665 -138724455 + (T)n Simple_repeat Simple_repeat 1 37 0 5 713 621 351 27 31 chr4 16905698 16905954 -138724166 + MTD LTR MaLR 55 309 -110 5 713 254 299 0 15 chr4 16905951 16906019 -138724101 + MTD LTR MaLR 267 333 -86 5 713 417 245 10 20 chr4 16906317 16906417 -138723703 + MTD LTR MaLR 321 419 -2 5 713 307 304 0 12 chr4 16906477 16906557 -138723563 + PB1D10 SINE Alu 37 115 -2 5 713 28 29 0 0 chr4 16907237 16907272 -138722848 + AT_rich Low_complexity Low_complexity 1 35 0 5 713 446 46 15 0 chr4 16907461 16907526 -138722594 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 713 264 30 0 0 chr4 16907526 16907559 -138722561 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 713 21 45 0 22 chr4 16907806 16907822 -138722298 + AT_rich Low_complexity Low_complexity 1 16 0 5 713 1112 82 0 0 chr4 16907822 16907968 -138722152 - B1_Mus1 SINE Alu -2 146 1 5 713 21 45 0 22 chr4 16907968 16907997 -138722123 + AT_rich Low_complexity Low_complexity 1 29 0 5 713 1045 120 0 0 chr4 16908106 16908248 -138721872 - B1_Mus1 SINE Alu -6 142 1 5 714 884 271 21 0 chr4 16909820 16910056 -138720064 + Lx9 LINE L1 7203 7443 -201 5 714 2855 231 42 8 chr4 16910048 16910694 -138719426 + Lx7 LINE L1 6374 7041 -655 5 714 7766 114 11 36 chr4 16910711 16910948 -138719172 - MusHAL1 LINE L1 -281 2431 2240 5 714 4712 143 21 77 chr4 16910948 16911908 -138718212 + RMER17A2 LTR ERVK 1 906 0 5 714 7766 114 11 36 chr4 16911908 16913000 -138717120 - MusHAL1 LINE L1 -473 2239 1135 5 714 6860 162 29 13 chr4 16913000 16914358 -138715762 - RLTR45-int LTR ERVK -456 7761 6331 5 714 2552 69 0 0 chr4 16914447 16914767 -138715353 - RLTR45-int LTR ERVK -5596 1648 1329 5 714 386 267 0 33 chr4 16915136 16915287 -138714833 - RNERVK23-int LTR ERVK -1883 6334 6189 5 714 1534 324 65 58 chr4 16915680 16918577 -138711543 - RNERVK23-int LTR ERVK -2469 5748 1518 5 714 2664 63 0 0 chr4 16918577 16918909 -138711211 + IAPEY3_LTR LTR ERVK 1 332 0 5 714 1433 261 98 54 chr4 16918909 16919077 -138711043 - RNERVK23-int LTR ERVK -5423 2794 2660 5 714 3047 48 0 5 chr4 16919077 16919488 -138710632 - L1Md_F2 LINE L1 0 6582 6206 5 714 721 127 8 0 chr4 16919712 16919830 -138710290 - RLTR45-int LTR ERVK -6213 1031 913 5 714 1740 84 0 0 chr4 16919960 16920187 -138709933 - RLTR45-int LTR ERVK -6334 910 684 5 714 1012 70 0 40 chr4 16920532 16920682 -138709438 - RLTR45-int LTR ERVK -6552 692 549 5 714 3560 107 34 8 chr4 16921472 16922002 -138708118 - RLTR45-int LTR ERVK -6700 544 1 5 714 2292 149 54 46 chr4 16922002 16922480 -138707640 - RLTR45 LTR ERVK 0 482 1 5 714 6703 147 28 17 chr4 16922480 16924556 -138705564 - L1VL2 LINE L1 -1551 2147 93 5 714 5573 101 11 4 chr4 16924561 16925370 -138704750 + L1_Mus3 LINE L1 5816 6630 -8 5 714 1010 272 64 43 chr4 16925846 16926284 -138703836 + Lx7 LINE L1 7146 7592 -104 5 714 430 139 28 56 chr4 16926874 16926981 -138703139 + Lx2B LINE L1 6881 6984 -16 5 714 1071 80 0 0 chr4 16927304 16927442 -138702678 + B1_Mm SINE Alu 2 139 -8 5 714 242 29 29 0 chr4 16927442 16927477 -138702643 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 714 794 240 77 64 chr4 16927663 16927961 -138702159 + Lx9 LINE L1 7185 7486 -158 5 714 202 197 38 50 chr4 16928045 16928125 -138701995 + A-rich Low_complexity Low_complexity 2 80 0 5 714 204 152 0 21 chr4 16928077 16928124 -138701996 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 714 23 0 0 0 chr4 16928187 16928210 -138701910 + AT_rich Low_complexity Low_complexity 1 23 0 5 714 217 233 0 0 chr4 16928246 16928289 -138701831 + GA-rich Low_complexity Low_complexity 4 46 0 5 714 230 179 36 0 chr4 16928552 16928608 -138701512 - L1M3 LINE L1 -1097 5043 4986 5 714 302 299 8 8 chr4 16928753 16928881 -138701239 + L1M1 LINE L1 5329 5456 -844 5 714 417 190 13 0 chr4 16928881 16928960 -138701160 + Lx9 LINE L1 7361 7440 -204 5 714 410 217 49 49 chr4 16929052 16929236 -138700884 + RMER17C LTR ERVK 92 275 -135 5 714 233 269 26 0 chr4 16929256 16929334 -138700786 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 714 342 0 0 0 chr4 16929349 16929387 -138700733 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 714 412 190 13 0 chr4 16929469 16929548 -138700572 + Lx9 LINE L1 7361 7440 -204 5 714 429 322 57 70 chr4 16929615 16930199 -138699921 + L1MB1 LINE L1 5529 6104 -64 5 714 231 94 0 0 chr4 16930442 16930474 -138699646 - L1_Mur1 LINE L1 -1182 4704 4673 5 714 3864 122 18 2 chr4 16930480 16931081 -138699039 - Lx3_Mus LINE L1 -6 7003 6393 5 714 4796 137 18 2 chr4 16931084 16932123 -138697997 + Lx3_Mus LINE L1 5325 6386 -623 5 714 1170 168 84 4 chr4 16932122 16932163 -138697957 - L1_Mur1 LINE L1 -1199 4687 4634 5 714 277 24 48 0 chr4 16932163 16932205 -138697915 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 5 714 1170 168 84 4 chr4 16932205 16932402 -138697718 - L1_Mur1 LINE L1 -1253 4633 4430 5 714 730 115 115 0 chr4 16932430 16932552 -138697568 - L1Md_F2 LINE L1 -12 6570 6435 5 714 2403 113 35 11 chr4 16932552 16932926 -138697194 - L1Md_F LINE L1 -5754 765 383 5 714 1633 132 15 8 chr4 16932931 16933190 -138696930 - L1VL1 LINE L1 -6161 261 1 5 714 6875 185 18 16 chr4 16933196 16934653 -138695467 - L1_Mur1 LINE L1 -1445 4441 2983 5 714 5424 197 5 79 chr4 16934651 16935430 -138694690 + Lx2 LINE L1 4680 5460 -423 5 714 3580 48 2 32 chr4 16935430 16935900 -138694220 + L1_Mus1 LINE L1 6112 6567 0 5 714 5424 167 11 26 chr4 16935900 16936665 -138693455 + Lx2 LINE L1 5461 6131 -866 5 714 364 147 0 0 chr4 16936665 16936740 -138693380 + Lx LINE L1 6580 6654 0 5 714 510 26 0 60 chr4 16937140 16937223 -138692897 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 5 714 1196 69 0 98 chr4 16937421 16937615 -138692505 - L1_Mus2 LINE L1 0 6566 6392 5 714 1587 83 14 5 chr4 16937615 16937833 -138692287 + Lx2 LINE L1 6141 6360 -206 5 714 25 0 0 0 chr4 16937973 16937998 -138692122 + AT_rich Low_complexity Low_complexity 1 25 0 5 714 836 139 7 0 chr4 16938031 16938175 -138691945 + (TTC)n Simple_repeat Simple_repeat 1 145 0 5 714 3498 137 8 95 chr4 16938175 16938942 -138691178 - RMER17A LTR ERVK 0 751 52 5 714 1174 95 6 6 chr4 16938943 16939123 -138690997 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 714 38452 47 3 9 chr4 16939123 16945240 -138684880 - L1Md_T LINE L1 -9 6573 476 5 714 381 39 0 0 chr4 16945252 16945259 -138684861 + (TTC)n Simple_repeat Simple_repeat 1 7 0 5 714 1107 72 0 0 chr4 16945259 16945398 -138684722 - B1_Mus2 SINE Alu -7 140 2 5 714 405 0 0 0 chr4 16945398 16945443 -138684677 + (TTG)n Simple_repeat Simple_repeat 2 46 0 5 714 381 39 0 0 chr4 16945443 16945485 -138684635 + (TTC)n Simple_repeat Simple_repeat 1 42 0 5 714 282 21 0 60 chr4 16945493 16945543 -138684577 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 714 890 172 29 12 chr4 16945545 16945716 -138684404 - Lx3B LINE L1 -30 6943 6770 5 714 6001 134 13 6 chr4 16945711 16947103 -138683017 - Lx3B LINE L1 -437 6536 5138 5 714 1437 291 85 47 chr4 16947890 16948445 -138681675 - MTC-int LTR MaLR -681 577 2 5 714 2106 211 114 52 chr4 16948605 16949185 -138680935 + RLTR18 LTR ERVK 1 616 0 5 714 24 0 0 0 chr4 16949640 16949664 -138680456 + AT_rich Low_complexity Low_complexity 1 24 0 5 714 432 45 15 0 chr4 16949709 16949775 -138680345 - L1Md_F2 LINE L1 -2 6580 6514 5 714 362 321 63 50 chr4 16949828 16950067 -138680053 + L1MB5 LINE L1 5916 6157 -17 5 714 3715 144 15 7 chr4 16950091 16950693 -138679427 + Lx3B LINE L1 6363 6969 -4 5 714 822 11 0 0 chr4 16951458 16951553 -138678567 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 714 381 350 70 0 chr4 16951616 16951759 -138678361 + B3A SINE B2 30 182 -16 5 714 324 133 0 0 chr4 16952103 16952163 -138677957 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 714 370 362 52 38 chr4 16952195 16952482 -138677638 - B4A SINE B4 -1 291 1 5 714 198 26 0 71 chr4 16952735 16952777 -138677343 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 5 714 1134 56 14 0 chr4 16953059 16953203 -138676917 - B1_Mus2 SINE Alu -1 146 1 5 714 3126 176 17 60 chr4 16953743 16954965 -138675155 + L1VL4 LINE L1 131 1290 -2269 5 714 242 113 63 16 chr4 16954970 16955033 -138675087 - L1_Mur2 LINE L1 -1980 3897 3832 5 714 24 32 0 0 chr4 16955302 16955333 -138674787 + AT_rich Low_complexity Low_complexity 1 31 0 5 714 495 0 0 0 chr4 16955356 16955411 -138674709 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 714 1601 200 43 17 chr4 16955852 16956198 -138673922 - ORR1B1 LTR MaLR -1 393 39 5 714 192 97 0 0 chr4 16956516 16956547 -138673573 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 714 706 208 34 0 chr4 16956845 16956994 -138673126 - URR1A DNA MER1_type -43 183 30 5 714 302 122 7 0 chr4 16957057 16957112 -138673008 + L1VL2 LINE L1 443 487 -5848 5 714 5607 161 15 7 chr4 16957259 16958704 -138671416 + L1VL4 LINE L1 495 1953 -1606 5 714 4000 165 4 8 chr4 16960997 16961747 -138668373 + L1VL4 LINE L1 1932 2678 -881 5 714 926 182 112 0 chr4 16961751 16961938 -138668182 + Lx2B LINE L1 6228 6435 -565 5 714 2644 167 18 0 chr4 16961940 16962389 -138667731 + Lx2B LINE L1 6540 6996 -4 5 714 8065 156 25 10 chr4 16962653 16964532 -138665588 - Lx2 LINE L1 -1 6996 5083 5 714 4040 184 19 42 chr4 16964527 16965394 -138664726 + Lx2 LINE L1 4271 5117 -766 5 714 22 70 0 0 chr4 16965732 16965775 -138664345 + AT_rich Low_complexity Low_complexity 1 43 0 5 714 21 36 0 0 chr4 16966332 16966360 -138663760 + AT_rich Low_complexity Low_complexity 1 28 0 5 714 325 349 37 0 chr4 16966531 16966772 -138663348 + L1M2 LINE L1 4504 4753 -1390 5 714 1268 357 19 14 chr4 16966776 16967424 -138662696 + Lx8 LINE L1 6668 7318 -155 5 714 276 30 0 0 chr4 16967430 16967463 -138662657 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 714 306 50 0 0 chr4 16967711 16967751 -138662369 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 714 453 318 38 4 chr4 16967801 16968066 -138662054 + L1M2 LINE L1 5003 5276 -867 5 714 10271 65 0 0 chr4 16968054 16969392 -138660728 + L1_Mm LINE L1 3452 4789 -1094 6 714 320 273 79 18 chr4 16969390 16969554 -138660566 + L1MA8 LINE L1 6019 6192 -99 6 714 24 0 0 0 chr4 16969735 16969759 -138660361 + AT_rich Low_complexity Low_complexity 1 24 0 6 714 200 111 0 27 chr4 16969989 16970026 -138660094 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 714 24 53 0 0 chr4 16970356 16970394 -138659726 + AT_rich Low_complexity Low_complexity 1 38 0 6 714 36 23 0 0 chr4 16970834 16970877 -138659243 + AT_rich Low_complexity Low_complexity 1 43 0 6 714 866 280 246 20 chr4 16970986 16971584 -138658536 - Lx7 LINE L1 -168 7528 6795 6 714 225 0 0 0 chr4 16971711 16971736 -138658384 + (T)n Simple_repeat Simple_repeat 1 25 0 6 714 1094 23 0 8 chr4 16973205 16973339 -138656781 + (TTTCC)n Simple_repeat Simple_repeat 4 136 0 6 714 240 263 48 81 chr4 16973723 16973847 -138656273 + RMER15 LTR ERVL 369 488 -87 6 714 300 407 42 35 chr4 16973993 16974370 -138655750 + L4 LINE RTE 766 1145 -884 6 714 2276 238 38 76 chr4 16974680 16975308 -138654812 - RLTR18 LTR ERVK -8 608 5 6 714 572 70 12 0 chr4 16975801 16975887 -138654233 + (GA)n Simple_repeat Simple_repeat 1 87 0 6 714 363 44 0 0 chr4 16975914 16975959 -138654161 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 714 966 88 0 9 chr4 16976629 16976781 -138653339 - L1_Mus4 LINE L1 -339 5844 5667 6 714 5564 73 54 9 chr4 16976781 16977545 -138652575 + L1_Mus2 LINE L1 5769 6566 0 6 714 349 324 32 59 chr4 16977569 16977756 -138652364 + Lx9 LINE L1 6932 7113 -531 6 714 382 384 75 44 chr4 16978671 16978965 -138651155 + Kanga1a DNA Tc2 153 455 -299 6 714 508 120 0 57 chr4 16979097 16979143 -138650977 - Lx2 LINE L1 0 6997 6954 6 714 3313 110 4 8 chr4 16979143 16979620 -138650500 + MT2C_Mm LTR ERVL 1 475 0 6 714 508 120 0 57 chr4 16979620 16979679 -138650441 - Lx2 LINE L1 -44 6953 6898 6 714 4001 143 0 33 chr4 16979680 16980354 -138649766 - Lx2 LINE L1 -18 6979 6328 6 714 468 0 0 0 chr4 16980722 16980774 -138649346 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 714 459 189 16 8 chr4 16980774 16980902 -138649218 + (TG)n Simple_repeat Simple_repeat 1 129 0 6 714 4271 183 30 24 chr4 16981319 16982345 -138647775 - Lx6 LINE L1 -2057 3823 2792 6 714 8471 212 25 22 chr4 16982337 16983374 -138646746 + Lx6 LINE L1 3830 4863 -1017 6 714 306 0 0 0 chr4 16983374 16983408 -138646712 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 714 8471 214 27 24 chr4 16983408 16984587 -138645533 + Lx6 LINE L1 4864 6055 -1405 6 714 2124 302 92 14 chr4 16984568 16985374 -138644746 + Lx6 LINE L1 6337 7165 -295 6 714 247 303 134 32 chr4 16985352 16985509 -138644611 + Lx6 LINE L1 7288 7460 0 6 714 8383 197 106 63 chr4 16985692 16990075 -138640045 - Lx2B LINE L1 -5 6995 2367 6 714 480 18 0 0 chr4 16990105 16990162 -138639958 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 714 535 252 9 9 chr4 16990164 16990280 -138639840 - B1_Mur3 SINE Alu -31 118 3 6 714 375 228 98 26 chr4 16990284 16990437 -138639683 - Lx2B LINE L1 -3515 2365 2202 6 714 1241 231 59 0 chr4 16990433 16990806 -138639314 - Lx2B LINE L1 -4164 1716 1322 6 714 253 271 17 0 chr4 16991064 16991123 -138638997 - Lx8 LINE L1 -1217 6256 6197 6 714 432 0 0 0 chr4 16991395 16991443 -138638677 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 714 400 262 64 70 chr4 16991697 16991869 -138638251 + B2_Mm2 SINE B2 6 176 -19 6 714 198 0 0 0 chr4 16992861 16992883 -138637237 + (T)n Simple_repeat Simple_repeat 1 22 0 6 714 32510 79 5 3 chr4 16993032 16998317 -138631803 + L1Md_F2 LINE L1 196 5589 -297 6 714 7863 53 4 3 chr4 16998317 16999311 -138630809 + L1Md_F2 LINE L1 5590 6584 -1 6 714 4212 104 43 2 chr4 17000258 17000882 -138629238 - L1_Mus4 LINE L1 -5 6631 5982 1 714 3470 25 0 0 chr4 17001693 17002089 -138628031 + MTA_Mm LTR MaLR 1 396 0 2 714 25 0 0 0 chr4 17002152 17002177 -138627943 + AT_rich Low_complexity Low_complexity 1 25 0 3 714 198 0 0 0 chr4 17002210 17002232 -138627888 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 4 714 270 329 68 68 chr4 17002956 17003119 -138627001 + B2_Mm2 SINE B2 3 165 -30 5 714 21 0 0 0 chr4 17003666 17003687 -138626433 + AT_rich Low_complexity Low_complexity 1 21 0 6 714 231 279 80 23 chr4 17004264 17004352 -138625768 - RSINE1 SINE B4 -46 119 27 7 714 1168 337 15 5 chr4 17004477 17004883 -138625237 - Lx6 LINE L1 -26 7434 7025 8 714 1146 308 51 3 chr4 17004880 17005271 -138624849 + Lx6 LINE L1 5864 6273 -1187 9 714 1028 291 62 9 chr4 17005271 17005685 -138624435 + Lx6 LINE L1 6510 7020 -440 9 714 4197 116 14 6 chr4 17005736 17006369 -138623751 + L1_Mm LINE L1 4960 5597 -286 1 714 7440 141 13 25 chr4 17006608 17007887 -138622233 - Lx3C LINE L1 -11 6965 5719 1 714 1594 264 177 72 chr4 17007890 17008776 -138621344 + RMER17B LTR ERVK 3 944 -14 1 714 1312 172 73 0 chr4 17008780 17009012 -138621108 - Lx3C LINE L1 -183 5703 5455 1 714 875 71 24 0 chr4 17009157 17009283 -138620837 + (GAAAA)n Simple_repeat Simple_repeat 2 130 0 1 714 231 355 65 13 chr4 17009311 17009465 -138620655 - L1MB3 LINE L1 -162 6021 5860 1 714 202 225 13 53 chr4 17010010 17010085 -138620035 + T-rich Low_complexity Low_complexity 4 75 0 1 714 237 212 15 15 chr4 17010378 17010445 -138619675 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 714 182 37 37 0 chr4 17010561 17010588 -138619532 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1 714 657 240 16 0 chr4 17010592 17010721 -138619399 - B1_Mur2 SINE Alu -11 138 8 1 714 197 139 23 0 chr4 17010729 17010772 -138619348 + (TATAA)n Simple_repeat Simple_repeat 2 45 0 1 714 413 174 12 113 chr4 17010777 17010945 -138619175 - Lx7 LINE L1 -174 7522 7372 2 714 297 51 0 0 chr4 17010957 17010996 -138619124 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 714 4262 231 25 6 chr4 17011024 17012048 -138618072 + Lx2B LINE L1 5499 6540 -460 2 714 2231 195 62 32 chr4 17012048 17012230 -138617890 + RLTR26 LTR ERVK 1 174 -468 2 714 180 0 0 0 chr4 17012230 17012250 -138617870 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 714 2231 195 62 32 chr4 17012250 17012570 -138617550 + RLTR26 LTR ERVK 175 517 -125 2 714 630 0 0 0 chr4 17012571 17012641 -138617479 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 714 522 280 33 0 chr4 17012644 17012794 -138617326 + Lx6 LINE L1 6095 6249 -1211 2 714 1750 223 29 10 chr4 17012784 17013196 -138616924 - L1_Mur3 LINE L1 -132 5748 5329 2 714 1045 278 99 25 chr4 17013225 17013620 -138616500 - Lx7 LINE L1 -330 7366 6943 2 714 1874 224 128 42 chr4 17013629 17014566 -138615554 - L1_Mur3 LINE L1 -4102 1778 761 2 714 413 232 42 0 chr4 17014591 17014686 -138615434 - L1_Mur3 LINE L1 -7302 426 328 2 714 1017 133 32 0 chr4 17014854 17015012 -138615108 + B2_Mm2 SINE B2 2 164 -31 2 714 336 24 0 0 chr4 17015019 17015060 -138615060 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 714 324 83 0 0 chr4 17015589 17015637 -138614483 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 714 2393 246 39 12 chr4 17015637 17016196 -138613924 - Lx5 LINE L1 -19 7031 6458 3 714 369 0 0 0 chr4 17018798 17018839 -138611281 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 714 269 271 57 0 chr4 17018933 17019003 -138611117 + ID_B1 SINE B4 142 215 -9 3 714 234 62 0 0 chr4 17019017 17019049 -138611071 + (TTG)n Simple_repeat Simple_repeat 1 32 0 3 714 1989 133 86 44 chr4 17019178 17019562 -138610558 - RLTR9D LTR ERVK -3 400 1 3 714 327 85 0 0 chr4 17020937 17020984 -138609136 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 714 207 88 0 0 chr4 17021462 17021496 -138608624 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 714 270 0 0 0 chr4 17021720 17021750 -138608370 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 714 1169 62 0 0 chr4 17021817 17021963 -138608157 + B1_Mm SINE Alu 1 146 -1 4 714 239 56 74 0 chr4 17021963 17022017 -138608103 + (CAA)n Simple_repeat Simple_repeat 2 59 0 4 714 221 288 0 0 chr4 17022046 17022112 -138608008 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 714 459 0 0 0 chr4 17023488 17023539 -138606581 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 714 533 266 21 25 chr4 17023552 17023730 -138606390 + MTD LTR MaLR 34 215 -204 4 714 715 254 235 22 chr4 17023730 17024088 -138606032 + Lx6 LINE L1 7017 7450 -10 4 714 23 0 0 0 chr4 17024088 17024111 -138606009 + AT_rich Low_complexity Low_complexity 1 23 0 4 714 953 238 43 5 chr4 17024138 17024349 -138605771 + MTD LTR MaLR 199 417 -2 4 714 21 36 0 0 chr4 17024373 17024401 -138605719 + AT_rich Low_complexity Low_complexity 1 28 0 4 714 29 60 0 0 chr4 17024572 17024622 -138605498 + AT_rich Low_complexity Low_complexity 1 50 0 4 714 1058 91 7 0 chr4 17024683 17024826 -138605294 + B1_Mm SINE Alu 1 144 -3 4 714 210 37 0 0 chr4 17024826 17024853 -138605267 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 714 248 273 61 0 chr4 17024938 17025004 -138605116 - MTEb LTR MaLR -44 375 306 5 714 4559 15 0 0 chr4 17025013 17025543 -138604577 - L1_Mm LINE L1 -1386 4497 3968 5 714 708 69 0 0 chr4 17025536 17025623 -138604497 + L1Md_T LINE L1 5500 5586 -297 5 714 8036 53 0 0 chr4 17025623 17026619 -138603501 + L1Md_T LINE L1 5587 6582 0 5 714 373 278 58 43 chr4 17026651 17026829 -138603291 - MTEb LTR MaLR -146 233 63 5 714 307 308 100 30 chr4 17026997 17027268 -138602852 - L1MA9 LINE L1 -22 6290 6001 5 714 2603 78 23 0 chr4 17028493 17028840 -138601280 + L1_Mus1 LINE L1 6207 6561 -6 5 714 1024 282 94 43 chr4 17029793 17030238 -138599882 - Lx9 LINE L1 -926 6718 6251 5 714 4263 148 22 45 chr4 17030482 17031260 -138598860 - Lx3C LINE L1 -2 6974 6215 5 714 5874 136 2 14 chr4 17031282 17032208 -138597912 - Lx2 LINE L1 -231 6766 5852 5 714 354 45 0 0 chr4 17032257 17032301 -138597819 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 714 1017 85 0 0 chr4 17032470 17032611 -138597509 + (TTTC)n Simple_repeat Simple_repeat 4 144 0 6 714 1197 54 0 0 chr4 17032620 17032768 -138597352 - B1_Mus1 SINE Alu 0 148 1 6 714 343 286 48 0 chr4 17032771 17032855 -138597265 - B4 SINE B4 -199 93 6 6 714 512 351 59 42 chr4 17032889 17033246 -138596874 - MLT1B LTR MaLR -2 388 26 6 714 2364 153 10 7 chr4 17033573 17033980 -138596140 + Lx3A LINE L1 6572 6979 -2 6 714 2880 169 58 110 chr4 17034391 17034486 -138595634 - RLTR13C1 LTR ERVK -38 864 767 6 714 4294 64 27 2 chr4 17034486 17035036 -138595084 + LTRIS2 LTR ERV1 1 564 0 6 714 2924 169 58 110 chr4 17035036 17035761 -138594359 - RLTR13C1 LTR ERVK -136 766 86 6 714 6534 101 68 0 chr4 17035775 17036843 -138593277 - L1_Mus3 LINE L1 -30 6608 5468 6 714 1290 166 175 23 chr4 17036846 17037155 -138592965 - ORR1B1 LTR MaLR 0 394 39 6 714 21 36 0 0 chr4 17037718 17037746 -138592374 + AT_rich Low_complexity Low_complexity 1 28 0 6 714 206 316 0 0 chr4 17038809 17038885 -138591235 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 89 345 295 11 11 chr4 17039277 17039366 -138590754 - B3 SINE B2 -124 92 4 7 715 342 303 11 11 chr4 17039687 17039777 -138590343 - B3 SINE B2 -124 92 3 7 715 1406 78 0 0 chr4 17040503 17040735 -138589385 + L1Md_F2 LINE L1 6375 6582 0 7 715 1433 133 60 0 chr4 17041086 17041319 -138588801 - ORR1A2 LTR MaLR -80 247 1 7 715 30 59 0 0 chr4 17041407 17041458 -138588662 + AT_rich Low_complexity Low_complexity 1 51 0 7 715 2071 322 86 31 chr4 17041492 17042770 -138587350 + Lx8 LINE L1 5777 7124 -349 7 715 922 201 47 5 chr4 17043058 17043273 -138586847 + URR1B DNA MER1_type 2 225 0 7 715 246 269 146 31 chr4 17043275 17043371 -138586749 - MER5A DNA MER1_type -76 113 7 7 715 1914 150 52 3 chr4 17043534 17043881 -138586239 - Lx3C LINE L1 -2 6974 6611 7 715 200 320 125 44 chr4 17044056 17044216 -138585904 + L2a LINE L2 3254 3426 0 8 715 706 167 13 0 chr4 17044582 17044738 -138585382 + GA-rich Low_complexity Low_complexity 2 159 0 8 715 1244 291 98 3 chr4 17044989 17045223 -138584897 + MTD LTR MaLR 1 264 -155 8 715 3583 61 0 19 chr4 17045223 17045705 -138584415 - L1Md_F2 LINE L1 0 6582 6110 8 715 1244 291 98 3 chr4 17045705 17045839 -138584281 + MTD LTR MaLR 265 403 -16 8 715 575 262 119 96 chr4 17045930 17046107 -138584013 + B3 SINE B2 6 215 -1 8 715 22 0 0 0 chr4 17048578 17048600 -138581520 + AT_rich Low_complexity Low_complexity 1 22 0 8 715 193 281 71 86 chr4 17050942 17051082 -138579038 - MIRb SINE MIR -4 264 127 8 715 290 325 91 75 chr4 17051215 17051601 -138578519 + L2 LINE L2 2529 2920 -499 8 715 7159 114 15 38 chr4 17052268 17053448 -138576672 - Lx3_Mus LINE L1 -8 7001 5849 8 715 1463 133 142 2 chr4 17053449 17053922 -138576198 + L1_Mur1 LINE L1 899 1437 -4449 8 715 488 310 136 0 chr4 17055327 17055511 -138574609 - B3 SINE B2 -7 209 1 9 715 37404 48 1 4 chr4 17055547 17061899 -138568221 - L1Md_T LINE L1 0 6585 159 9 715 8520 121 16 8 chr4 17062580 17064135 -138565985 + Lx3A LINE L1 5361 6929 -52 9 715 1036 142 14 17 chr4 17064136 17064330 -138565790 + Lx3A LINE L1 5868 6064 -503 9 715 28 61 0 0 chr4 17064330 17064379 -138565741 + AT_rich Low_complexity Low_complexity 1 49 0 9 715 192 230 22 0 chr4 17064431 17064566 -138565554 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 9 715 216 67 0 0 chr4 17064535 17064565 -138565555 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 715 288 376 45 62 chr4 17066330 17066574 -138563546 + LTR40b LTR ERVL 1 240 -222 9 715 500 324 86 29 chr4 17067478 17067688 -138562432 - MLT1F2 LTR MaLR -15 545 324 9 715 611 265 70 29 chr4 17068373 17068645 -138561475 - L1_Rod LINE L1 -54 5793 5511 9 715 275 0 0 28 chr4 17069128 17069164 -138560956 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 715 240 261 46 0 chr4 17069168 17069233 -138560887 - L1M2 LINE L1 -787 5513 5446 1 715 1543 287 197 16 chr4 17069327 17070087 -138560033 + Lx8 LINE L1 6576 7473 0 1 715 802 132 20 0 chr4 17070141 17070292 -138559828 - L1_Mus3 LINE L1 -8 6630 6477 1 715 212 359 0 60 chr4 17070292 17070375 -138559745 + B4A SINE B4 31 108 -184 1 715 255 125 0 0 chr4 17070650 17070690 -138559430 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 715 3345 38 2 0 chr4 17070826 17071221 -138558899 + MTA_Mm LTR MaLR 1 396 0 1 715 5150 72 44 1 chr4 17072038 17072722 -138557398 + L1_Mus2 LINE L1 5853 6565 -1 1 715 5531 254 35 57 chr4 17072849 17073263 -138556857 - Lx7 LINE L1 0 7696 7362 1 715 582 54 0 0 chr4 17073263 17073337 -138556783 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 715 5531 254 35 57 chr4 17073337 17074593 -138555527 - Lx7 LINE L1 -335 7361 6064 1 715 1099 188 42 0 chr4 17074672 17074885 -138555235 - Lx2 LINE L1 0 6997 6776 1 715 294 262 82 27 chr4 17075582 17075692 -138554428 - MLT1A1 LTR MaLR -2 406 291 1 715 32 81 0 0 chr4 17077232 17077306 -138552814 + AT_rich Low_complexity Low_complexity 1 74 0 1 715 1115 282 99 28 chr4 17077384 17077920 -138552200 - Lx9 LINE L1 -4 7640 7067 1 715 296 278 0 0 chr4 17077921 17077993 -138552127 - B3A SINE B2 -125 73 2 1 715 1121 348 24 24 chr4 17078804 17079301 -138550819 + Lx8 LINE L1 6685 7181 -292 1 715 368 267 139 0 chr4 17079403 17079504 -138550616 + Lx6 LINE L1 6622 6736 -724 1 715 1686 190 47 33 chr4 17079529 17079894 -138550226 - RLTR14 LTR ERV1 -12 370 1 1 715 1897 179 238 5 chr4 17079894 17080448 -138549672 - RLTR14-int LTR ERV1 0 5317 4637 1 715 1309 189 19 37 chr4 17080447 17080716 -138549404 - RLTR14-int LTR ERV1 -2123 3194 2931 1 715 3712 176 46 32 chr4 17080788 17080926 -138549194 - RLTR14-int LTR ERV1 -2521 2796 2654 1 715 258 32 0 0 chr4 17080926 17080957 -138549163 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1 715 3712 176 46 32 chr4 17080957 17081262 -138548858 - RLTR14-int LTR ERV1 -2664 2653 2346 1 715 5196 30 30 0 chr4 17081262 17081885 -138548235 - L1Md_A LINE L1 0 6582 5941 1 715 3712 176 46 32 chr4 17081885 17082180 -138547940 - RLTR14-int LTR ERV1 -2972 2345 2047 1 715 1413 284 33 53 chr4 17082180 17082540 -138547580 - RLTR14-int LTR ERV1 -3578 1739 1388 1 715 5469 148 58 2 chr4 17082540 17083447 -138546673 + RMER17B LTR ERVK 1 958 0 1 715 1413 284 33 53 chr4 17083447 17083540 -138546580 - RLTR14-int LTR ERV1 -3930 1387 1295 1 715 4071 221 80 97 chr4 17083636 17084552 -138545568 - RLTR14-int LTR ERV1 -4035 1282 383 1 715 951 109 0 0 chr4 17084552 17084717 -138545403 + (CAGAGA)n Simple_repeat Simple_repeat 2 166 0 1 715 4071 221 80 97 chr4 17084717 17084761 -138545359 - RLTR14-int LTR ERV1 -4935 382 339 1 715 962 103 0 0 chr4 17084761 17084906 -138545214 + L1_Mus2 LINE L1 6422 6566 0 1 715 4071 221 80 97 chr4 17084906 17085249 -138544871 - RLTR14-int LTR ERV1 -4979 338 1 1 715 1174 226 46 0 chr4 17085249 17085510 -138544610 - RLTR14 LTR ERV1 0 382 110 1 715 582 28 0 0 chr4 17085510 17085582 -138544538 + (TTTTA)n Simple_repeat Simple_repeat 2 73 0 1 715 7179 58 6 0 chr4 17085595 17086481 -138543639 - RLTR13B1 LTR ERVK 0 893 3 1 715 295 27 0 0 chr4 17086486 17086523 -138543597 - RLTR14 LTR ERV1 -335 47 11 1 715 2433 273 48 21 chr4 17086529 17087195 -138542925 + Lx6 LINE L1 6762 7445 -15 1 715 3586 53 2 9 chr4 17087265 17087720 -138542400 + L1Md_F2 LINE L1 6128 6579 -3 1 715 340 161 0 0 chr4 17089166 17089222 -138540898 - Lx6 LINE L1 -345 7115 7060 1 715 462 36 0 0 chr4 17089223 17089279 -138540841 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 715 189 0 0 0 chr4 17089279 17089299 -138540821 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 715 371 386 40 10 chr4 17089757 17089956 -138540164 + RMER15 LTR ERVL 356 560 -15 1 715 414 315 29 69 chr4 17092969 17093143 -138536977 + MTC LTR MaLR 1 167 -254 1 715 5343 65 1 3 chr4 17093190 17093885 -138536235 - L1Md_F2 LINE L1 0 6582 5889 1 715 2465 62 3 0 chr4 17093885 17094191 -138535929 + L1Md_F2 LINE L1 5496 5802 -81 1 715 280 321 100 67 chr4 17094191 17094311 -138535809 + MTC LTR MaLR 167 290 -129 1 715 555 216 14 14 chr4 17094314 17094565 -138535555 + GA-rich Low_complexity Low_complexity 1 251 0 1 715 492 351 0 7 chr4 17094569 17094704 -138535416 + ID_B1 SINE B4 83 216 -8 1 715 2633 198 40 35 chr4 17094714 17095409 -138534711 - L1_Mur3 LINE L1 -1969 3911 3213 1 715 2273 217 56 34 chr4 17096587 17097136 -138532984 + L1Md_F LINE L1 539 1085 -5531 1 715 308 68 47 78 chr4 17097136 17097200 -138532920 + B1_Mus2 SINE Alu 86 147 0 1 715 2273 217 56 34 chr4 17097200 17097228 -138532892 + L1Md_F LINE L1 1086 1114 -5502 1 715 576 65 0 0 chr4 17097228 17097305 -138532815 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 1 715 4168 131 5 21 chr4 17097305 17098070 -138532050 + L1Md_F LINE L1 1115 1892 -3991 1 715 4349 126 93 29 chr4 17098066 17098850 -138531270 + L1Md_F LINE L1 2712 3545 -2338 1 715 34715 67 7 9 chr4 17098851 17104068 -138526052 + L1Md_F3 LINE L1 419 5589 -297 1 715 7477 62 12 1 chr4 17104068 17105041 -138525079 + L1Md_F3 LINE L1 5590 6573 -14 1 715 7349 134 4 5 chr4 17105042 17106260 -138523860 + L1_Mm LINE L1 3533 4749 -1134 1 715 414 228 139 0 chr4 17106281 17106382 -138523738 + RLTR26 LTR ERVK 528 642 0 1 715 989 161 11 11 chr4 17106382 17106564 -138523556 + L1_Mm LINE L1 5049 5230 -653 1 715 6148 78 605 1 chr4 17106565 17107335 -138522785 + L1_Mus2 LINE L1 3590 4589 -1294 1 715 4988 45 2 0 chr4 17107335 17107940 -138522180 - L1Md_T LINE L1 0 6582 5977 1 715 7126 80 302 8 chr4 17107940 17109293 -138520827 + L1_Mus2 LINE L1 4590 6565 -1 1 715 180 0 0 0 chr4 17110037 17110057 -138520063 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 715 483 343 57 51 chr4 17110372 17110699 -138519421 + MLT1A0 LTR MaLR 35 350 -58 1 715 659 247 67 11 chr4 17110740 17110920 -138519200 - B3 SINE B2 0 216 27 1 715 554 347 95 14 chr4 17110932 17111154 -138518966 + MTC LTR MaLR 75 314 -107 1 715 302 324 162 20 chr4 17111155 17111303 -138518817 + MTD LTR MaLR 251 419 0 1 715 1829 336 86 44 chr4 17111442 17112772 -138517348 - Lx8 LINE L1 -2 7471 6086 1 715 1103 213 222 42 chr4 17113012 17113531 -138516589 + Lx7 LINE L1 7082 7693 -3 1 715 216 0 0 0 chr4 17114050 17114074 -138516046 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 715 414 283 24 24 chr4 17115058 17115181 -138514939 - Lx8 LINE L1 -1088 6385 6263 1 715 1019 45 8 0 chr4 17115182 17115315 -138514805 + (TTCTC)n Simple_repeat Simple_repeat 3 136 0 1 715 601 137 8 8 chr4 17115318 17115436 -138514684 + CT-rich Low_complexity Low_complexity 1 118 0 1 715 633 317 24 5 chr4 17115436 17115645 -138514475 - Lx6 LINE L1 0 7460 7248 1 715 1176 258 67 0 chr4 17115655 17115938 -138514182 - Lx6 LINE L1 -372 7088 6787 1 715 24 0 0 0 chr4 17115999 17116023 -138514097 + AT_rich Low_complexity Low_complexity 1 24 0 1 715 694 139 0 0 chr4 17116854 17116976 -138513144 + ORR1A3-int LTR MaLR 197 318 -1645 1 715 878 160 91 6 chr4 17117053 17117229 -138512891 - Lx LINE L1 -44 6610 6420 1 715 618 183 0 16 chr4 17117229 17117351 -138512769 + ORR1A3-int LTR MaLR 307 426 -1537 1 715 1139 207 63 12 chr4 17117349 17117603 -138512517 - MTC LTR MaLR -154 267 1 1 715 812 269 28 84 chr4 17117730 17118100 -138512020 + RLTR33 LTR ERVK 160 593 -85 1 715 376 198 75 21 chr4 17118548 17118641 -138511479 + RLTR23 LTR ERV1 333 430 0 1 715 198 103 0 0 chr4 17119078 17119107 -138511013 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 715 1114 88 0 0 chr4 17119170 17119317 -138510803 + B1_Mm SINE Alu 1 147 0 1 715 2062 182 35 18 chr4 17119971 17120429 -138509691 - L1_Mur2 LINE L1 -741 5136 4671 1 715 864 208 21 58 chr4 17120430 17120670 -138509450 + RLTR11A LTR ERVK 214 444 -84 1 715 1106 89 7 0 chr4 17120676 17120822 -138509298 + B1_Mm SINE Alu 1 147 0 1 715 9162 116 21 4 chr4 17120842 17122706 -138507414 + Lx3_Mus LINE L1 5111 7008 -1 1 715 393 258 0 11 chr4 17122730 17122824 -138507296 + RLTR11A LTR ERVK 436 528 0 1 715 702 0 0 0 chr4 17123307 17123385 -138506735 + (GAAA)n Simple_repeat Simple_repeat 4 81 0 1 715 255 79 0 0 chr4 17123611 17123649 -138506471 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 1 715 3913 216 84 20 chr4 17123711 17124687 -138505433 + Lx5 LINE L1 6013 7050 0 1 715 632 280 63 21 chr4 17124755 17124992 -138505128 + Lx6 LINE L1 7187 7433 -27 1 715 24 0 0 0 chr4 17124993 17125017 -138505103 + AT_rich Low_complexity Low_complexity 1 24 0 1 715 340 294 104 26 chr4 17125133 17125325 -138504795 + L1MC5 LINE L1 6982 7188 -773 1 715 314 232 0 0 chr4 17125488 17125557 -138504563 + L1MC5 LINE L1 7323 7391 -570 1 715 23 86 0 0 chr4 17126505 17126563 -138503557 + AT_rich Low_complexity Low_complexity 1 58 0 1 715 25 31 0 0 chr4 17126942 17126974 -138503146 + AT_rich Low_complexity Low_complexity 1 32 0 1 715 435 329 33 27 chr4 17127989 17128139 -138501981 - RSINE1 SINE B4 -8 157 7 1 715 241 138 185 12 chr4 17128357 17128438 -138501682 - MER33 DNA MER1_type -5 319 225 1 715 1109 261 12 5 chr4 17128470 17128757 -138501363 + Lx2B LINE L1 6596 6980 -78 1 715 225 341 24 0 chr4 17129128 17129210 -138500910 - B1_Mur2 SINE Alu 0 149 66 1 715 180 0 0 0 chr4 17130523 17130543 -138499577 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 715 324 0 0 0 chr4 17130543 17130578 -138499542 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 715 341 347 12 120 chr4 17130579 17130709 -138499411 - RSINE1 SINE B4 0 165 49 1 715 2640 65 157 141 chr4 17130709 17131213 -138498907 - RLTR1B LTR ERV1 0 512 1 1 715 341 347 12 120 chr4 17131213 17131249 -138498871 - RSINE1 SINE B4 -117 48 17 1 715 31 26 0 0 chr4 17131707 17131745 -138498375 + AT_rich Low_complexity Low_complexity 1 38 0 1 715 11158 185 59 32 chr4 17132096 17134587 -138495533 + ETnERV2-int LTR ERVK 1369 3923 -3483 1 715 699 24 0 0 chr4 17134587 17134672 -138495448 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 715 11158 181 70 31 chr4 17134672 17135935 -138494185 + ETnERV2-int LTR ERVK 2874 4176 -1230 1 715 510 279 13 20 chr4 17135943 17136093 -138494027 + ETnERV2-int LTR ERVK 6097 6245 -1161 1 715 616 237 51 35 chr4 17136125 17136322 -138493798 + ETnERV2-int LTR ERVK 6223 6422 -984 1 715 315 192 13 27 chr4 17136533 17136608 -138493512 + ETnERV2-int LTR ERVK 7331 7404 -2 1 715 1939 176 37 21 chr4 17136609 17136986 -138493134 + RLTR9A2 LTR ERVK 1 383 0 1 715 3323 188 35 41 chr4 17137177 17137886 -138492234 + RMER6D LTR ERVK 4 708 -12 1 715 1335 351 64 68 chr4 17137894 17138914 -138491206 - Lx8 LINE L1 -199 7274 6259 1 715 5328 221 40 25 chr4 17139422 17141564 -138488556 - Lx5 LINE L1 -3 7047 4858 1 715 1197 187 159 20 chr4 17141564 17142075 -138488045 - Lx5 LINE L1 -4425 1452 871 1 715 248 375 18 46 chr4 17142921 17143030 -138487090 - PB1D10 SINE Alu -2 115 10 1 715 234 0 0 0 chr4 17143413 17143439 -138486681 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 715 22 35 0 0 chr4 17143855 17143884 -138486236 + AT_rich Low_complexity Low_complexity 1 29 0 1 715 213 108 0 0 chr4 17144132 17144169 -138485951 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 715 26 30 0 0 chr4 17144366 17144399 -138485721 + AT_rich Low_complexity Low_complexity 1 33 0 1 715 35298 36 0 0 chr4 17144399 17150074 -138480046 + L1Md_T LINE L1 3 5589 -297 1 715 8931 6 0 4 chr4 17150074 17151074 -138479046 + L1Md_T LINE L1 5590 6585 0 1 715 23 68 0 0 chr4 17151177 17151221 -138478899 + AT_rich Low_complexity Low_complexity 1 44 0 1 715 22 35 0 0 chr4 17151464 17151493 -138478627 + AT_rich Low_complexity Low_complexity 1 29 0 1 715 432 0 0 0 chr4 17151622 17151670 -138478450 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 715 259 279 43 14 chr4 17151677 17151746 -138478374 - PB1D10 SINE Alu -10 107 37 1 715 263 323 164 8 chr4 17151732 17151860 -138478260 - B1F SINE Alu -1 148 1 2 715 2608 142 95 28 chr4 17152082 17152576 -138477544 + Lx2 LINE L1 6118 6644 -353 2 715 913 163 158 0 chr4 17152577 17152761 -138477359 + Lx2 LINE L1 6777 6989 -8 2 715 1268 255 25 34 chr4 17153009 17153362 -138476758 - Lx6 LINE L1 -4 7456 7107 2 715 453 270 54 68 chr4 17153365 17153512 -138476608 + B1_Mm SINE Alu 1 145 -2 2 715 26 64 0 0 chr4 17156166 17156213 -138473907 + AT_rich Low_complexity Low_complexity 1 47 0 2 715 405 0 0 0 chr4 17156579 17156624 -138473496 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 715 297 281 11 22 chr4 17156642 17156733 -138473387 - RLTR25B LTR ERVK -17 1011 922 2 715 363 228 167 38 chr4 17157104 17157236 -138472884 - RLTR25B LTR ERVK -166 862 714 2 715 230 239 0 33 chr4 17157247 17157338 -138472782 + Lx9 LINE L1 7556 7643 -1 2 715 25 31 0 0 chr4 17158074 17158106 -138472014 + AT_rich Low_complexity Low_complexity 1 32 0 2 715 530 114 0 11 chr4 17158107 17158196 -138471924 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 715 254 317 19 38 chr4 17158244 17158349 -138471771 + MER106B DNA MER1_type 944 1046 -13 2 715 7165 105 16 13 chr4 17158970 17160290 -138469830 - L1_Mus4 LINE L1 -5 6631 5307 2 715 208 188 21 0 chr4 17161455 17161503 -138468617 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 715 411 169 37 30 chr4 17161506 17161640 -138468480 + CT-rich Low_complexity Low_complexity 4 138 0 2 715 1414 37 0 11 chr4 17161640 17161917 -138468203 + (TTC)n Simple_repeat Simple_repeat 1 273 0 2 715 187 293 185 25 chr4 17162328 17162566 -138467554 + L2 LINE L2 1887 2162 -1257 2 715 26 0 0 0 chr4 17162794 17162820 -138467300 + AT_rich Low_complexity Low_complexity 1 26 0 2 715 183 221 162 0 chr4 17163701 17163769 -138466351 - L3 LINE CR1 -401 4088 4010 2 715 472 290 11 74 chr4 17163781 17163956 -138466164 + RSINE1 SINE B4 2 165 0 2 715 239 222 12 0 chr4 17163956 17164037 -138466083 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 715 480 35 0 0 chr4 17164135 17164193 -138465927 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 715 737 289 39 0 chr4 17164209 17164413 -138465707 + B3 SINE B2 1 212 -4 2 715 506 16 16 0 chr4 17164922 17164985 -138465135 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 715 333 0 0 0 chr4 17164985 17165022 -138465098 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 715 1210 157 46 5 chr4 17166725 17166943 -138463177 - ORR1A2 LTR MaLR -8 319 93 2 715 211 113 19 19 chr4 17166950 17167004 -138463116 + T-rich Low_complexity Low_complexity 1 54 0 2 715 851 130 6 70 chr4 17167017 17167174 -138462946 - B1_Mus1 SINE Alu -1 147 1 2 715 598 151 0 19 chr4 17167174 17167282 -138462838 - ORR1A2 LTR MaLR -220 106 1 2 715 25 51 0 0 chr4 17168398 17168437 -138461683 + AT_rich Low_complexity Low_complexity 1 39 0 2 715 3248 208 64 76 chr4 17168691 17169352 -138460768 - L1_Mur3 LINE L1 -2760 3120 2456 2 715 852 68 0 0 chr4 17169352 17169470 -138460650 + L1_Mus2 LINE L1 6439 6556 -10 2 715 3248 208 64 76 chr4 17169470 17169820 -138460300 - L1_Mur3 LINE L1 -3425 2455 2151 2 715 306 106 0 0 chr4 17169820 17169867 -138460253 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2 715 3248 208 64 76 chr4 17169867 17169983 -138460137 - L1_Mur3 LINE L1 -3730 2150 2008 2 89 10526 45 11 9 chr4 17169990 17172280 -138457840 - L1Md_A LINE L1 -2 6995 4685 2 716 351 65 0 0 chr4 17172308 17172354 -138457766 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 716 456 176 94 77 chr4 17172429 17172546 -138457574 + B1_Mus2 SINE Alu 29 147 0 2 716 2248 186 21 23 chr4 17172555 17173039 -138457081 + Lx6 LINE L1 4165 4647 -1233 2 716 989 179 28 0 chr4 17173031 17173210 -138456910 + Lx2B LINE L1 6565 6748 -252 2 716 1550 231 27 9 chr4 17173211 17173548 -138456572 + Lx2B LINE L1 6658 7000 0 2 716 1458 237 50 50 chr4 17173542 17174022 -138456098 + Lx6 LINE L1 4629 5108 -772 2 716 3423 208 17 10 chr4 17174052 17174752 -138455368 + RMER6D LTR ERVK 1 705 -15 2 716 5741 268 110 18 chr4 17174753 17176065 -138454055 + Lx6 LINE L1 5146 6614 -846 2 716 2778 49 0 55 chr4 17176065 17176431 -138453689 + ORR1A0 LTR MaLR 1 346 0 2 716 5741 282 61 20 chr4 17176431 17177242 -138452878 + Lx6 LINE L1 6615 7444 -16 2 716 363 23 0 0 chr4 17178272 17178316 -138451804 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 716 2736 48 0 24 chr4 17178686 17179026 -138451094 - IAPEY3_LTR LTR ERVK 0 332 1 2 716 236 282 63 13 chr4 17179311 17179390 -138450730 - ID4_ SINE ID 0 83 1 2 716 181 319 13 65 chr4 17179696 17179773 -138450347 + L3 LINE CR1 3523 3595 -894 2 716 23 33 0 0 chr4 17179849 17179879 -138450241 + AT_rich Low_complexity Low_complexity 1 30 0 2 716 351 44 0 0 chr4 17179924 17179969 -138450151 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 716 1026 65 0 0 chr4 17182001 17182140 -138447980 + B1_Mm SINE Alu 9 147 0 2 716 264 137 0 0 chr4 17182145 17182196 -138447924 + (A)n Simple_repeat Simple_repeat 1 51 0 2 716 780 111 0 0 chr4 17182278 17182395 -138447725 + (TC)n Simple_repeat Simple_repeat 2 118 0 2 716 282 87 0 0 chr4 17182395 17182441 -138447679 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 2 716 1064 90 7 0 chr4 17182442 17182587 -138447533 - B1_Mus1 SINE Alu -2 146 1 2 716 385 161 0 0 chr4 17182602 17182664 -138447456 + L1_Mur1 LINE L1 5497 5558 -328 2 716 315 0 0 0 chr4 17183103 17183138 -138446982 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 716 22 56 0 0 chr4 17183180 17183216 -138446904 + AT_rich Low_complexity Low_complexity 1 36 0 2 716 23 0 0 0 chr4 17183539 17183562 -138446558 + AT_rich Low_complexity Low_complexity 1 23 0 2 716 677 276 49 10 chr4 17184076 17184281 -138445839 - Lx6 LINE L1 -12 7448 7236 2 716 369 0 0 0 chr4 17186945 17186986 -138443134 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 716 3032 72 5 0 chr4 17187115 17187516 -138442604 + L1Md_F2 LINE L1 6178 6580 -2 2 716 539 333 15 51 chr4 17187782 17187978 -138442142 + B3A SINE B2 10 198 0 2 716 253 342 9 27 chr4 17188147 17188258 -138441862 - RMER12 LTR ERVK -471 851 743 2 716 21 36 0 0 chr4 17188320 17188348 -138441772 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 371 21 21 0 chr4 17188492 17188540 -138441580 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 716 491 157 9 0 chr4 17188552 17188660 -138441460 + CT-rich Low_complexity Low_complexity 2 110 0 2 716 293 250 0 0 chr4 17189509 17189581 -138440539 - 4.5SRNA scRNA scRNA -7 87 16 2 716 21 36 0 0 chr4 17189677 17189705 -138440415 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 572 338 14 0 chr4 17190267 17190474 -138439646 + B3 SINE B2 1 210 -6 2 716 198 0 0 0 chr4 17191203 17191225 -138438895 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 716 450 0 0 0 chr4 17191225 17191274 -138438846 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 716 24 67 0 0 chr4 17191535 17191580 -138438540 + AT_rich Low_complexity Low_complexity 1 45 0 2 716 441 0 0 0 chr4 17191917 17191966 -138438154 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 716 474 128 0 0 chr4 17191966 17192060 -138438060 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 716 353 337 88 33 chr4 17192061 17192242 -138437878 - B4A SINE B4 0 292 102 2 716 23 0 0 0 chr4 17192539 17192562 -138437558 + AT_rich Low_complexity Low_complexity 1 23 0 2 716 261 298 69 17 chr4 17192562 17192678 -138437442 - L1M5 LINE L1 -1280 4866 4745 2 716 31 0 0 0 chr4 17192761 17192792 -138437328 + AT_rich Low_complexity Low_complexity 1 31 0 2 716 1348 324 69 18 chr4 17192891 17193198 -138436922 + Lx6 LINE L1 6829 7151 -309 2 716 302 0 26 0 chr4 17193198 17193236 -138436884 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 716 1348 324 69 18 chr4 17193236 17193365 -138436755 + Lx6 LINE L1 7152 7297 -163 2 716 201 74 0 0 chr4 17193365 17193392 -138436728 + (TTATG)n Simple_repeat Simple_repeat 2 28 0 2 716 1348 324 69 18 chr4 17193392 17193516 -138436604 + Lx6 LINE L1 7298 7418 -42 2 716 216 0 0 0 chr4 17193632 17193656 -138436464 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 716 936 90 0 0 chr4 17193656 17193800 -138436320 + (TG)n Simple_repeat Simple_repeat 2 146 0 2 716 232 348 0 146 chr4 17194471 17194663 -138435457 - RSINE1 SINE B4 0 165 2 2 716 1911 161 41 3 chr4 17194695 17195037 -138435083 - RLTR25B LTR ERVK -655 373 19 2 716 1076 96 0 0 chr4 17195929 17196075 -138434045 + B1_Mus2 SINE Alu 2 147 0 2 716 180 0 0 0 chr4 17196075 17196095 -138434025 + (A)n Simple_repeat Simple_repeat 1 20 0 2 716 259 352 14 0 chr4 17196846 17196917 -138433203 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 2 716 21 0 0 0 chr4 17196992 17197013 -138433107 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 237 350 30 10 chr4 17197072 17197173 -138432947 + MLT1B LTR MaLR 1 103 -287 2 716 21 36 0 0 chr4 17197784 17197812 -138432308 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 312 214 69 31 chr4 17198387 17198517 -138431603 - L1MB5 LINE L1 -1 6183 6049 2 716 635 340 76 30 chr4 17198614 17199020 -138431100 - L1MB5 LINE L1 -260 5914 5490 2 716 582 258 11 32 chr4 17199132 17199320 -138430800 - Lx4B LINE L1 -6 7052 6869 2 716 238 410 21 43 chr4 17199405 17199545 -138430575 - B1F1 SINE Alu -11 138 2 2 716 663 343 54 38 chr4 17199819 17200264 -138429856 - L1MB5 LINE L1 -2002 4144 3693 2 716 31 0 0 0 chr4 17200316 17200347 -138429773 + AT_rich Low_complexity Low_complexity 1 31 0 2 716 6456 30 17 1 chr4 17200591 17201368 -138428752 - L1Md_F3 LINE L1 -16 6568 5780 2 716 235 179 83 0 chr4 17201925 17202009 -138428111 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 716 4637 79 5 6 chr4 17202996 17203618 -138426502 - L1_Mus1 LINE L1 -2 6565 5945 2 716 1806 186 22 3 chr4 17204007 17204363 -138425757 - Lx LINE L1 -1 6653 6291 2 716 2705 144 38 2 chr4 17204363 17204807 -138425313 + Lx LINE L1 5822 6281 -373 2 716 282 320 107 39 chr4 17204863 17205068 -138425052 + Tigger5 DNA MER2_type 21 239 -2167 2 716 535 285 109 44 chr4 17205148 17205515 -138424605 - L1MB5 LINE L1 -3505 2641 2251 2 716 31 99 0 0 chr4 17205715 17205816 -138424304 + AT_rich Low_complexity Low_complexity 1 101 0 2 716 22 0 0 0 chr4 17205916 17205938 -138424182 + AT_rich Low_complexity Low_complexity 1 22 0 2 716 2922 194 45 45 chr4 17206009 17206589 -138423531 - L1_Mur2 LINE L1 -13 5864 5266 2 716 512 204 7 26 chr4 17206589 17206740 -138423380 - Lx2B LINE L1 0 7000 6853 2 716 2922 194 45 45 chr4 17206740 17206868 -138423252 - L1_Mur2 LINE L1 -612 5265 5156 2 716 1196 295 31 44 chr4 17206869 17207259 -138422861 + Lx5 LINE L1 6666 7050 0 3 716 432 293 26 8 chr4 17207417 17207534 -138422586 + B3 SINE B2 1 119 -97 3 716 42 86 0 0 chr4 17207588 17207693 -138422427 + AT_rich Low_complexity Low_complexity 1 105 0 3 716 23 92 0 0 chr4 17207708 17207773 -138422347 + AT_rich Low_complexity Low_complexity 1 65 0 3 716 354 281 149 56 chr4 17208756 17208971 -138421149 + RMER5 LTR ERV1 43 277 -257 3 716 34587 55 1 3 chr4 17208971 17214383 -138415737 + L1Md_F2 LINE L1 95 5590 -296 3 716 7354 73 4 7 chr4 17214384 17215369 -138414751 + L1Md_F2 LINE L1 5592 6573 -12 3 716 6717 143 42 9 chr4 17215369 17216530 -138413590 + Lx3A LINE L1 5783 6981 0 3 716 207 0 0 0 chr4 17216543 17216566 -138413554 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 3 716 297 0 0 0 chr4 17217029 17217062 -138413058 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 716 2962 158 67 4 chr4 17217173 17217699 -138412421 - Lx4A LINE L1 -1 7057 6499 3 716 253 229 243 0 chr4 17217699 17217769 -138412351 - L1_Mur2 LINE L1 -6605 107 21 3 716 21 57 0 0 chr4 17217850 17217885 -138412235 + AT_rich Low_complexity Low_complexity 1 35 0 3 716 798 321 75 57 chr4 17217944 17218386 -138411734 + RMER13A LTR ERVK 1 450 -410 3 716 1116 82 7 0 chr4 17218445 17218591 -138411529 - B1_Mus1 SINE Alu 0 148 2 3 716 1191 229 3 116 chr4 17219078 17219449 -138410671 - ORR1A4 LTR MaLR 0 329 1 3 716 976 264 96 16 chr4 17220494 17220871 -138409249 + Lx9 LINE L1 7087 7493 -151 3 716 23 0 0 0 chr4 17220999 17221022 -138409098 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 297 309 15 7 chr4 17222156 17222293 -138407827 + Lx6 LINE L1 6659 6796 -664 3 716 201 74 0 0 chr4 17222308 17222335 -138407785 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 716 5984 65 0 8 chr4 17222363 17223141 -138406979 + L1Md_F2 LINE L1 5799 6570 -12 3 716 17173 178 45 72 chr4 17223444 17229792 -138400328 + Lx3C LINE L1 569 6296 -680 3 716 603 332 30 11 chr4 17229846 17230108 -138400012 - RMER5 LTR ERV1 0 534 268 3 716 38266 47 0 3 chr4 17230128 17237005 -138393115 - L1Md_T LINE L1 0 6585 1 3 716 11992 19 1 4 chr4 17237005 17238369 -138391751 + IAPEz-int LTR ERVK 5122 6481 0 3 716 1983 111 3 74 chr4 17238369 17238720 -138391400 + IAPLTR1a_Mm LTR ERVK 1 326 -11 3 716 815 191 20 7 chr4 17238728 17238876 -138391244 + Lx3B LINE L1 6743 6892 -81 3 716 5206 234 16 2 chr4 17238872 17240272 -138389848 - Lx5 LINE L1 -1057 5993 4568 3 716 2074 253 21 110 chr4 17240280 17241043 -138389077 + RMER17B LTR ERVK 264 958 0 3 716 704 239 113 31 chr4 17241043 17241081 -138389039 - Lx5 LINE L1 -2955 2922 2885 3 716 293 24 49 0 chr4 17241081 17241122 -138388998 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 716 704 239 113 31 chr4 17241122 17241376 -138388744 - Lx5 LINE L1 -2993 2884 2608 3 716 295 269 32 165 chr4 17241388 17241482 -138388638 - Lx5 LINE L1 -3738 2139 2050 3 716 342 0 0 0 chr4 17241482 17241520 -138388600 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 716 295 269 32 165 chr4 17241520 17241643 -138388477 - Lx5 LINE L1 -3828 2049 1951 3 716 1216 217 34 70 chr4 17241637 17241811 -138388309 - Lx5 LINE L1 -4237 1640 1470 3 716 329 0 0 24 chr4 17241811 17241853 -138388267 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 716 465 117 324 0 chr4 17241858 17241969 -138388151 - B1_Mus1 SINE Alu 0 148 2 3 716 1232 227 26 79 chr4 17241969 17242588 -138387532 - Lx5 LINE L1 -4408 1469 892 3 716 279 0 0 0 chr4 17242682 17242713 -138387407 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 716 294 123 0 0 chr4 17243579 17243636 -138386484 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 3 716 26 0 0 0 chr4 17243814 17243840 -138386280 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 611 346 34 34 chr4 17245769 17246005 -138384115 + B4A SINE B4 43 278 -14 3 716 414 0 0 0 chr4 17246029 17246075 -138384045 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 716 208 218 55 0 chr4 17246201 17246256 -138383864 + GA-rich Low_complexity Low_complexity 2 59 0 3 716 234 246 0 0 chr4 17246293 17246354 -138383766 + GA-rich Low_complexity Low_complexity 2 62 0 3 716 26 0 0 0 chr4 17248881 17248907 -138381213 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 1611 184 10 13 chr4 17248907 17249215 -138380905 - Lx4A LINE L1 -3 7055 6749 3 716 1125 214 8 8 chr4 17249215 17249469 -138380651 + Lx4A LINE L1 5922 6175 -883 3 716 1760 168 7 0 chr4 17249469 17249766 -138380354 + Lx4A LINE L1 6455 6753 -305 3 716 491 244 37 166 chr4 17249793 17250196 -138379924 - Lx7 LINE L1 -19 7677 7327 3 716 746 140 0 14 chr4 17250231 17250369 -138379751 + GA-rich Low_complexity Low_complexity 1 136 0 3 716 880 212 123 14 chr4 17250393 17250613 -138379507 - Lx7 LINE L1 -361 7335 7092 3 716 9348 245 59 68 chr4 17250619 17252998 -138377122 - Lx7 LINE L1 -797 6899 4427 3 716 270 0 0 0 chr4 17252998 17253028 -138377092 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3 716 9348 238 38 101 chr4 17253028 17253059 -138377061 - Lx7 LINE L1 -1454 4426 4417 3 716 203 88 0 29 chr4 17253059 17253094 -138377026 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 716 10748 169 21 30 chr4 17253094 17255592 -138374528 - Lx7 LINE L1 -1464 4416 2146 3 716 33695 78 4 5 chr4 17255707 17262024 -138368096 - L1Md_F2 LINE L1 0 6582 269 3 716 5678 132 35 28 chr4 17262013 17263744 -138366376 - L1VL1 LINE L1 -1756 1942 200 3 716 209 154 0 37 chr4 17263744 17263798 -138366322 + T-rich Low_complexity Low_complexity 2 53 0 3 716 539 149 346 0 chr4 17263801 17263908 -138366212 - B1_Mus1 SINE Alu 0 148 5 3 716 21 0 0 0 chr4 17263933 17263954 -138366166 + AT_rich Low_complexity Low_complexity 1 21 0 3 716 29 28 0 0 chr4 17264516 17264552 -138365568 + AT_rich Low_complexity Low_complexity 1 36 0 3 716 1182 61 7 0 chr4 17264879 17265026 -138365094 - B1_Mus1 SINE Alu 0 148 1 3 716 426 282 48 8 chr4 17265028 17265153 -138364967 - MTE2b LTR MaLR -13 366 237 3 716 1270 299 9 25 chr4 17265222 17265544 -138364576 + MTE2a LTR MaLR 58 374 -5 3 716 1985 142 9 61 chr4 17265665 17266010 -138364110 + ORR1A2 LTR MaLR 1 327 0 3 716 2367 264 53 38 chr4 17266012 17266168 -138363952 - Lx6 LINE L1 -1123 6337 6164 3 716 270 56 0 0 chr4 17266168 17266204 -138363916 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 716 2367 264 53 38 chr4 17266204 17266413 -138363707 - Lx6 LINE L1 -1297 6163 5957 3 716 4987 120 29 95 chr4 17266413 17267379 -138362741 + RMER17A2 LTR ERVK 1 902 -4 3 716 2367 264 53 38 chr4 17267379 17267749 -138362371 - Lx6 LINE L1 -1504 5956 5591 3 716 2936 201 19 188 chr4 17267748 17268109 -138362011 - Lx6 LINE L1 -1233 4647 4313 3 716 580 194 7 0 chr4 17268109 17268248 -138361872 - Lx2A1 LINE L1 -6 7002 6863 3 716 2936 202 19 185 chr4 17268248 17269321 -138360799 - Lx6 LINE L1 -1568 4312 3466 3 716 9512 97 25 22 chr4 17269320 17270592 -138359528 - L1_Mus2 LINE L1 0 6566 5224 3 716 411 21 0 0 chr4 17270592 17270640 -138359480 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 716 9512 127 70 11 chr4 17270640 17271643 -138358477 - L1_Mus2 LINE L1 -660 5223 4209 3 716 486 49 0 0 chr4 17271643 17271704 -138358416 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 716 9512 127 70 11 chr4 17271704 17271715 -138358405 - L1_Mus2 LINE L1 -1675 4208 4193 3 716 3301 38 5 0 chr4 17271715 17272109 -138358011 - MTA_Mm LTR MaLR 0 396 1 3 716 9512 127 70 11 chr4 17272109 17272168 -138357952 - L1_Mus2 LINE L1 -1691 4192 4135 3 716 1262 192 19 22 chr4 17272173 17272497 -138357623 - Lx6 LINE L1 -2411 3469 3147 3 716 2381 265 43 9 chr4 17272544 17273237 -138356883 - Lx2B LINE L1 -46 6954 6238 3 716 396 0 0 0 chr4 17273240 17273284 -138356836 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 3 716 616 182 7 14 chr4 17273289 17273434 -138356686 - Lx6 LINE L1 -2743 3137 2994 3 716 1356 163 72 14 chr4 17273447 17273674 -138356446 - Lx6 LINE L1 -3137 2743 2508 3 716 231 36 0 0 chr4 17273674 17273702 -138356418 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 716 243 0 0 0 chr4 17273702 17273728 -138356392 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 716 1356 163 72 14 chr4 17273728 17273792 -138356328 - Lx6 LINE L1 -3373 2507 2435 3 716 24 32 0 0 chr4 17273943 17273974 -138356146 + AT_rich Low_complexity Low_complexity 1 31 0 3 716 25 83 0 0 chr4 17274199 17274259 -138355861 + AT_rich Low_complexity Low_complexity 1 60 0 3 716 333 0 0 0 chr4 17274286 17274323 -138355797 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 716 268 333 125 0 chr4 17274323 17274419 -138355701 - RSINE1 SINE B4 -41 124 17 3 716 215 198 12 47 chr4 17275725 17275840 -138354280 + (TTATA)n Simple_repeat Simple_repeat 1 110 0 3 716 229 234 16 0 chr4 17276029 17276093 -138354027 - L1MDa LINE L1 -3949 2588 2524 3 716 265 361 68 11 chr4 17276264 17276530 -138353590 - L1MDa LINE L1 -4365 2268 1988 3 716 326 304 92 70 chr4 17276859 17277401 -138352719 - L1MDa LINE L1 -4897 1736 1183 3 716 21 82 0 0 chr4 17277470 17277519 -138352601 + AT_rich Low_complexity Low_complexity 1 49 0 3 716 462 65 0 0 chr4 17277737 17277799 -138352321 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 716 313 434 44 10 chr4 17277859 17278064 -138352056 - L1MDa LINE L1 -6142 491 280 3 716 244 325 97 5 chr4 17279276 17279471 -138350649 - L1M2 LINE L1 -4245 2604 2392 3 716 1250 170 0 9 chr4 17279662 17279887 -138350233 - Lx2 LINE L1 0 6997 6775 3 716 5047 168 53 18 chr4 17279885 17280705 -138349415 - Lx2 LINE L1 -352 6645 5792 3 716 2231 80 119 14 chr4 17280705 17281058 -138349062 + RLTR10 LTR ERVK 1 390 0 3 716 5047 186 47 18 chr4 17281058 17281206 -138348914 - Lx2 LINE L1 -298 5826 5668 3 716 252 0 0 0 chr4 17281530 17281558 -138348562 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 3 716 1061 155 64 50 chr4 17281559 17281777 -138348343 - Lx2 LINE L1 -206 5677 5457 3 716 4174 35 0 0 chr4 17281791 17282283 -138347837 - L1Md_T LINE L1 -1 6581 6090 3 716 1367 58 0 0 chr4 17282283 17282456 -138347664 + L1Md_A LINE L1 5903 6075 -507 3 716 2482 171 12 4 chr4 17282451 17282944 -138347176 - L1_Mur2 LINE L1 -423 5454 4958 3 716 1976 176 18 3 chr4 17282943 17283324 -138346796 - L1_Mur2 LINE L1 -2075 3802 3416 3 716 429 228 0 0 chr4 17283329 17283408 -138346712 - L1VL4 LINE L1 -6034 268 190 3 716 225 197 106 0 chr4 17283639 17283705 -138346415 + Lx5 LINE L1 6978 7050 0 3 716 207 139 0 0 chr4 17283705 17283741 -138346379 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 716 1927 271 20 14 chr4 17283765 17284255 -138345865 - Lx5 LINE L1 -81 6969 6477 3 716 895 288 19 23 chr4 17284358 17284621 -138345499 + Lx5 LINE L1 6586 6847 -203 3 716 673 233 0 0 chr4 17284608 17284737 -138345383 + Lx5 LINE L1 6779 6907 -143 3 716 23 78 0 0 chr4 17286060 17286111 -138344009 + AT_rich Low_complexity Low_complexity 1 51 0 3 716 2089 252 104 7 chr4 17286221 17286797 -138343323 + Lx2B LINE L1 6366 6997 -3 3 716 282 125 0 0 chr4 17287054 17287102 -138343018 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 716 347 351 130 14 chr4 17287477 17287769 -138342351 + ORR1E LTR MaLR 32 357 -2 3 716 26 64 0 0 chr4 17287830 17287877 -138342243 + AT_rich Low_complexity Low_complexity 1 47 0 3 716 800 192 85 0 chr4 17288440 17288617 -138341503 + URR1A DNA MER1_type 1 192 -34 3 716 581 98 0 0 chr4 17289197 17289279 -138340841 - L1_Mus3 LINE L1 -373 6265 6184 3 716 2014 100 20 47 chr4 17289272 17289613 -138340507 + L1_Mus3 LINE L1 6251 6578 -4 3 716 216 135 0 0 chr4 17290063 17290100 -138340020 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 3 716 691 324 57 25 chr4 17290399 17290716 -138339404 - RLTR18B LTR ERVK 0 512 186 3 716 546 342 39 39 chr4 17290754 17291064 -138339056 - RLTR18 LTR ERVK -302 314 5 3 716 5000 92 38 4 chr4 17291815 17292544 -138337576 - L1_Mus3 LINE L1 -13 6625 5872 3 716 2378 107 0 0 chr4 17292544 17292937 -138337183 + L1_Mus3 LINE L1 5530 5922 -716 3 716 25 95 0 0 chr4 17292996 17293070 -138337050 + AT_rich Low_complexity Low_complexity 1 74 0 3 716 530 185 9 0 chr4 17293078 17293186 -138336934 - Lx LINE L1 -4 6650 6542 3 716 1173 56 0 0 chr4 17293417 17293579 -138336541 + (TG)n Simple_repeat Simple_repeat 2 163 0 3 716 361 250 0 0 chr4 17294730 17294806 -138335314 - L1MA4 LINE L1 -364 5936 5861 4 716 333 351 53 18 chr4 17294967 17295193 -138334927 - L1MD LINE L1 -626 5616 5383 4 716 27 81 0 0 chr4 17295259 17295321 -138334799 + AT_rich Low_complexity Low_complexity 1 62 0 4 716 5355 219 47 9 chr4 17295404 17296373 -138333747 - Lx4B LINE L1 -18 7040 6024 4 716 243 0 0 0 chr4 17296373 17296400 -138333720 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 716 333 0 0 0 chr4 17296400 17296436 -138333684 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 716 5355 219 47 9 chr4 17296436 17296673 -138333447 - Lx4B LINE L1 -1035 6023 5788 4 716 6390 180 15 36 chr4 17296672 17297170 -138332950 + L1_Mur2 LINE L1 4236 4726 -1151 4 716 348 24 0 0 chr4 17297170 17297211 -138332909 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 4 716 6390 180 15 36 chr4 17297211 17298086 -138332034 + L1_Mur2 LINE L1 4727 5579 -298 4 716 8167 50 1 0 chr4 17298086 17299081 -138331039 + L1Md_F2 LINE L1 5587 6582 0 4 716 5790 47 78 0 chr4 17299073 17299813 -138330307 + L1Md_F2 LINE L1 5783 6580 -2 4 716 1369 119 5 0 chr4 17299815 17300025 -138330095 + RMER16-int LTR ERVK 4085 4295 -1111 4 716 2901 98 5 9 chr4 17300025 17300459 -138329661 - L1Md_F2 LINE L1 0 6582 6151 4 89 12049 85 5 7 chr4 17300462 17302169 -138327951 - L1_Mm LINE L1 -579 5304 3601 4 717 337 97 81 0 chr4 17302169 17302231 -138327889 + RMER16-int LTR ERVK 5335 5401 -5 4 717 1930 199 58 41 chr4 17302235 17302690 -138327430 + RMER16 LTR ERVK 1 510 -23 4 717 2150 98 82 0 chr4 17302690 17303018 -138327102 - IAPEY2_LTR LTR ERVK -2 355 1 4 717 1930 196 57 44 chr4 17303018 17303047 -138327073 + RMER16 LTR ERVK 511 533 0 4 717 976 208 107 13 chr4 17303711 17303935 -138326185 - ORR1C2 LTR MaLR 0 384 140 4 717 207 0 0 0 chr4 17303939 17303962 -138326158 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 717 394 258 55 24 chr4 17303970 17304097 -138326023 - B2_Mm2 SINE B2 -58 137 7 4 717 1062 196 23 5 chr4 17304172 17304392 -138325728 - URR1B DNA MER1_type 0 225 2 4 717 549 80 0 0 chr4 17304516 17304591 -138325529 + (T)n Simple_repeat Simple_repeat 1 75 0 4 717 3023 56 2 5 chr4 17304681 17305078 -138325042 - L1Md_F2 LINE L1 0 6582 6187 4 717 1057 109 17 0 chr4 17306735 17306910 -138323210 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 717 284 306 65 0 chr4 17307302 17307410 -138322710 - L1M2 LINE L1 -583 5708 5594 4 717 231 286 8 53 chr4 17307480 17307613 -138322507 - L1M2 LINE L1 -690 5493 5367 4 717 4105 198 45 23 chr4 17308185 17309218 -138320902 + L1VL4 LINE L1 1 1047 -2512 4 717 17370 164 41 72 chr4 17309208 17309499 -138320621 + L1_Mm LINE L1 2051 2352 -3531 4 717 396 59 0 0 chr4 17309499 17309550 -138320570 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 717 17370 164 41 72 chr4 17309550 17310314 -138319806 + L1_Mm LINE L1 2353 3143 -2740 4 717 324 0 0 0 chr4 17310314 17310350 -138319770 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 4 717 17370 164 41 72 chr4 17310350 17312336 -138317784 + L1_Mm LINE L1 3144 4927 -956 4 717 1055 99 0 0 chr4 17312336 17312477 -138317643 - B1_Mus2 SINE Alu -5 142 2 4 717 17370 164 41 72 chr4 17312477 17312558 -138317562 + L1_Mm LINE L1 4928 5023 -860 4 717 952 116 0 0 chr4 17312558 17312696 -138317424 + B1_Mus2 SINE Alu 1 138 -9 4 717 288 70 0 0 chr4 17312696 17312739 -138317381 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 717 17370 164 41 72 chr4 17312739 17313564 -138316556 + L1_Mm LINE L1 5024 5879 -4 4 717 209 292 20 20 chr4 17313638 17313736 -138316384 + (CATA)n Simple_repeat Simple_repeat 1 98 0 4 717 404 51 17 0 chr4 17313736 17313795 -138316325 + (TATG)n Simple_repeat Simple_repeat 1 60 0 4 717 406 326 148 0 chr4 17313805 17313940 -138316180 - B3 SINE B2 -60 156 2 4 717 22 0 0 0 chr4 17314011 17314033 -138316087 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 210 167 0 0 chr4 17314262 17314298 -138315822 + A-rich Low_complexity Low_complexity 1 36 0 4 717 24 67 0 0 chr4 17314798 17314843 -138315277 + AT_rich Low_complexity Low_complexity 1 45 0 4 717 301 358 12 0 chr4 17315091 17315172 -138314948 - ID4 SINE ID -1 82 1 4 717 598 348 122 0 chr4 17315303 17315639 -138314481 + MER21B LTR ERV1 436 812 -51 4 717 23 0 0 0 chr4 17315861 17315884 -138314236 + AT_rich Low_complexity Low_complexity 1 23 0 4 717 23 0 0 0 chr4 17316468 17316491 -138313629 + AT_rich Low_complexity Low_complexity 1 23 0 4 717 859 288 73 60 chr4 17316838 17317207 -138312913 + Lx7 LINE L1 6680 7053 -643 4 717 411 293 77 72 chr4 17317484 17317705 -138312415 + Lx9 LINE L1 6948 7169 -475 4 717 376 316 53 29 chr4 17317721 17317965 -138312155 + Lx9 LINE L1 7223 7472 -172 4 717 431 294 36 7 chr4 17319154 17319291 -138310829 + MLT1B LTR MaLR 30 170 -220 4 717 545 172 38 38 chr4 17319670 17319803 -138310317 + Lx3A LINE L1 6843 6975 -6 4 717 8023 175 29 6 chr4 17319843 17321275 -138308845 + Lx4A LINE L1 5587 7050 -8 4 717 222 191 0 0 chr4 17321297 17321344 -138308776 + GA-rich Low_complexity Low_complexity 3 49 0 4 717 216 340 54 120 chr4 17321500 17321684 -138308436 + B2_Mm2 SINE B2 2 173 -22 4 717 225 304 53 21 chr4 17322208 17322302 -138307818 - MIRb SINE MIR -54 214 118 4 717 812 237 38 19 chr4 17322647 17322912 -138307208 + BGLII_B LTR ERVK 146 415 -30 4 717 3433 121 49 36 chr4 17322916 17323657 -138306463 + L1_Mus1 LINE L1 5868 6626 -10 4 717 22 0 0 0 chr4 17323658 17323680 -138306440 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 4018 153 82 4 chr4 17323684 17323751 -138306369 + Lx2 LINE L1 6183 6249 -748 4 717 297 0 0 0 chr4 17323751 17323784 -138306336 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 717 4018 153 82 4 chr4 17323784 17324471 -138305649 + Lx2 LINE L1 6250 6996 -1 4 717 5375 106 5 13 chr4 17324938 17326181 -138303939 + L1VL4 LINE L1 405 1633 -1926 4 717 2152 169 59 22 chr4 17326182 17326642 -138303478 - L1VL4 LINE L1 -1420 4457 3981 4 717 5848 187 30 33 chr4 17326639 17328379 -138301741 - L1VL4 LINE L1 -3270 2616 881 4 717 648 0 0 0 chr4 17328866 17328938 -138301182 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 717 5994 16 0 0 chr4 17329425 17330107 -138300013 - L1Md_A LINE L1 0 6582 5901 4 717 715 186 29 10 chr4 17330133 17330339 -138299781 - L1_Mur1 LINE L1 -3705 2181 1972 4 717 666 326 14 90 chr4 17330989 17331279 -138298841 - B4 SINE B4 0 292 25 4 717 425 322 0 16 chr4 17331392 17331669 -138298451 + (TA)n Simple_repeat Simple_repeat 1 272 0 4 717 302 214 12 0 chr4 17332682 17332766 -138297354 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 717 2761 132 5 2 chr4 17333062 17333488 -138296632 - L1_Mus4 LINE L1 -423 6213 5787 4 717 4614 136 57 8 chr4 17333488 17334628 -138295492 + Lx LINE L1 5164 6361 -293 4 717 1605 142 0 0 chr4 17334630 17334869 -138295251 + L1_Mm LINE L1 5547 5785 -98 4 717 3176 217 28 88 chr4 17334903 17335931 -138294189 + Lx5 LINE L1 1820 2785 -3092 4 717 35383 36 1 1 chr4 17335922 17341757 -138288363 + L1Md_T LINE L1 1 5589 -297 4 717 8871 11 0 0 chr4 17341757 17342753 -138287367 + L1Md_T LINE L1 5590 6585 0 4 717 9287 199 19 38 chr4 17342767 17345033 -138285087 + Lx5 LINE L1 2773 4994 -883 4 717 6048 95 51 1 chr4 17345029 17346468 -138283652 + L1Md_A LINE L1 573 2100 -3783 4 717 15472 94 10 111 chr4 17346470 17348088 -138282032 + L1Md_A LINE L1 3091 4721 -1162 4 717 1025 201 129 51 chr4 17348088 17348391 -138281729 + IAPEY3_LTR LTR ERVK 1 351 -6 4 717 15472 94 10 111 chr4 17348391 17349248 -138280872 + L1Md_A LINE L1 4722 5586 -297 4 717 7207 74 18 6 chr4 17349248 17350228 -138279892 + L1Md_F2 LINE L1 5587 6578 -4 4 717 2351 182 29 42 chr4 17350235 17350757 -138279363 + Lx5 LINE L1 4994 5508 -369 4 717 2725 217 51 12 chr4 17351082 17351917 -138278203 + Lx5 LINE L1 5489 6373 -677 4 717 621 0 0 0 chr4 17352578 17352647 -138277473 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 717 3667 125 64 8 chr4 17353668 17354290 -138275830 - L1_Mus3 LINE L1 -1164 4719 4063 4 717 6381 133 25 3 chr4 17354273 17356036 -138274084 + L1_Mus3 LINE L1 4743 6538 -100 4 717 1573 227 170 0 chr4 17356035 17356436 -138273684 - Lx4B LINE L1 -415 6643 6175 4 717 946 286 70 19 chr4 17356456 17356827 -138273293 + Lx5 LINE L1 6549 7037 -21 4 717 1077 0 0 22 chr4 17356828 17356964 -138273156 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 4 717 54 29 0 0 chr4 17357297 17357365 -138272755 + AT_rich Low_complexity Low_complexity 1 68 0 4 717 3830 101 2 39 chr4 17357368 17357957 -138272163 - L1_Mus2 LINE L1 -1 6565 5999 4 717 3080 96 11 11 chr4 17357980 17358422 -138271698 + L1_Mus2 LINE L1 5587 6030 -536 4 717 2101 83 0 20 chr4 17358422 17358728 -138271392 - L1Md_F2 LINE L1 -2 6580 6281 4 717 3080 96 11 11 chr4 17358728 17358739 -138271381 + L1_Mus2 LINE L1 6031 6040 -526 4 717 257 362 56 28 chr4 17359355 17359463 -138270657 + L1M3c LINE L1 182 292 -5849 4 717 242 331 15 0 chr4 17360381 17360514 -138269606 - L1M3c LINE L1 -4560 1581 1447 4 717 1132 262 65 33 chr4 17360677 17361075 -138269045 - MTD LTR MaLR -14 405 1 4 717 206 214 0 0 chr4 17361346 17361388 -138268732 + GA-rich Low_complexity Low_complexity 4 45 0 4 717 27 0 0 0 chr4 17362162 17362189 -138267931 + AT_rich Low_complexity Low_complexity 1 27 0 4 717 323 377 67 18 chr4 17363302 17363526 -138266594 + Lx8 LINE L1 7095 7329 -144 4 717 267 31 0 0 chr4 17363540 17363572 -138266548 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 717 22 0 0 0 chr4 17364232 17364254 -138265866 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 220 222 48 24 chr4 17365128 17365211 -138264909 + (TATATG)n Simple_repeat Simple_repeat 3 87 0 4 717 950 369 20 5 chr4 17365281 17365730 -138264390 - Lx5 LINE L1 0 7050 6595 4 717 4162 220 114 21 chr4 17365719 17366898 -138263222 - L1_Mur2 LINE L1 -147 5730 4442 4 717 5496 129 11 16 chr4 17366891 17368195 -138261925 - L1_Mus3 LINE L1 0 6654 5387 4 717 2328 216 42 13 chr4 17368195 17368796 -138261324 - L1_Mur2 LINE L1 -1433 4444 3827 4 717 2818 198 38 2 chr4 17368802 17369378 -138260742 + L1_Mur2 LINE L1 4632 5228 -649 4 717 30 59 0 0 chr4 17369475 17369526 -138260594 + AT_rich Low_complexity Low_complexity 1 51 0 4 717 13412 25 0 1 chr4 17369581 17371836 -138258284 - L1Md_T LINE L1 -1 6581 4329 4 717 37911 32 3 0 chr4 17371835 17378488 -138251632 - L1Md_T LINE L1 0 6585 1 4 717 24145 53 5 1 chr4 17378480 17381606 -138248514 - L1Md_T LINE L1 -1537 4346 1210 4 717 20371 95 58 9 chr4 17381608 17385276 -138244844 - L1Md_F LINE L1 -1419 4464 616 4 717 2561 83 29 0 chr4 17385363 17385713 -138244407 + L1Md_F2 LINE L1 5226 5585 -298 4 717 7460 76 7 3 chr4 17385714 17386692 -138243428 + L1Md_F2 LINE L1 5587 6568 -14 4 717 31 44 0 0 chr4 17386692 17386737 -138243383 + AT_rich Low_complexity Low_complexity 1 45 0 4 717 25 51 0 0 chr4 17386814 17386853 -138243267 + AT_rich Low_complexity Low_complexity 1 39 0 4 717 7647 84 2 5 chr4 17387207 17389005 -138241115 + L1Md_F LINE L1 571 2363 -3520 4 717 9152 87 5 27 chr4 17389010 17390330 -138239790 - L1_Mm LINE L1 -254 5629 4339 4 717 4331 39 22 0 chr4 17390322 17390947 -138239173 + L1Md_F2 LINE L1 5498 6136 -446 4 717 2376 90 6 9 chr4 17390947 17391294 -138238826 + LTRIS2 LTR ERV1 219 564 0 4 717 198 0 0 0 chr4 17391434 17391456 -138238664 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 5 717 7064 188 17 8 chr4 17392088 17393416 -138236704 + Lx2B LINE L1 5657 6996 -4 5 717 17270 175 35 5 chr4 17393497 17397254 -138232866 + Lx LINE L1 2260 6127 -527 5 717 4266 12 0 0 chr4 17397254 17397736 -138232384 + LTRIS_Mm LTR ERV1 1 482 0 5 717 6686 131 18 5 chr4 17397736 17398251 -138231869 + Lx LINE L1 6128 6653 -1 5 717 32 0 0 0 chr4 17398477 17398509 -138231611 + AT_rich Low_complexity Low_complexity 1 32 0 5 717 407 308 120 37 chr4 17398647 17399079 -138231041 - L1MA5 LINE L1 -26 6274 5807 5 717 252 0 0 0 chr4 17399790 17399818 -138230302 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 717 214 50 50 0 chr4 17399824 17399864 -138230256 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 5 717 292 335 62 29 chr4 17400189 17400398 -138229722 + B3 SINE B2 1 216 0 5 717 920 87 7 7 chr4 17400691 17400830 -138229290 + L1_Mus2 LINE L1 6428 6566 0 5 717 245 382 51 0 chr4 17401406 17401563 -138228557 - MamGypLTR2 LTR Gypsy -33 1156 992 5 717 213 324 9 9 chr4 17401965 17402074 -138228046 + (CATATA)n Simple_repeat Simple_repeat 5 113 0 5 717 405 0 0 0 chr4 17402085 17402130 -138227990 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 717 226 341 90 7 chr4 17402219 17402497 -138227623 - LTR37B LTR ERV1 -162 306 6 5 717 422 167 12 0 chr4 17402599 17402683 -138227437 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 717 21 0 0 0 chr4 17403472 17403493 -138226627 + AT_rich Low_complexity Low_complexity 1 21 0 5 717 189 0 0 0 chr4 17404066 17404087 -138226033 + (TTC)n Simple_repeat Simple_repeat 3 23 0 5 717 300 27 0 0 chr4 17404089 17404126 -138225994 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 717 621 186 18 6 chr4 17404126 17404294 -138225826 + CT-rich Low_complexity Low_complexity 6 175 0 5 717 239 365 114 50 chr4 17404331 17404550 -138225570 - MLT1H1 LTR MaLR -319 236 4 5 717 229 277 60 43 chr4 17405188 17405305 -138224815 - ID_B1 SINE B4 -2 222 104 5 717 327 330 26 18 chr4 17405932 17406046 -138224074 + MTEa LTR MaLR 1 115 -264 5 717 705 24 0 0 chr4 17406908 17406991 -138223129 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 717 209 253 0 37 chr4 17407049 17407131 -138222989 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 5 717 994 291 98 6 chr4 17407274 17407779 -138222341 + Lx7 LINE L1 5397 5948 -1748 5 717 722 143 1 1 chr4 17407796 17407916 -138222204 + Lx7 LINE L1 6026 6132 -522 5 717 521 354 71 35 chr4 17407917 17408409 -138221711 + Lx9 LINE L1 6848 7357 -287 5 717 371 284 87 45 chr4 17408816 17409249 -138220871 + L1M2 LINE L1 5148 5596 -704 5 717 1184 262 95 47 chr4 17409274 17410051 -138220069 + RMER13B LTR ERVK 58 908 0 5 717 284 306 7 63 chr4 17410117 17410260 -138219860 + L1M2 LINE L1 5695 5829 -468 5 717 25 0 0 0 chr4 17410881 17410906 -138219214 + AT_rich Low_complexity Low_complexity 1 25 0 5 717 302 366 89 0 chr4 17410909 17411010 -138219110 + PB1D10 SINE Alu 1 110 -7 5 717 5114 143 58 4 chr4 17411784 17412692 -138217428 - Lx3C LINE L1 -2 6974 6018 5 717 21 57 0 0 chr4 17412798 17412833 -138217287 + AT_rich Low_complexity Low_complexity 1 35 0 5 717 21 36 0 0 chr4 17413129 17413157 -138216963 + AT_rich Low_complexity Low_complexity 1 28 0 5 717 201 118 59 0 chr4 17413281 17413332 -138216788 + (TAA)n Simple_repeat Simple_repeat 3 56 0 5 717 281 265 0 88 chr4 17413953 17414044 -138216076 - MTEa LTR MaLR -7 372 290 5 717 1855 252 61 13 chr4 17414940 17415167 -138214953 - Lx6 LINE L1 -312 7148 6912 5 717 918 125 0 0 chr4 17415167 17415311 -138214809 + (TCTCCC)n Simple_repeat Simple_repeat 5 148 0 5 717 1855 252 61 13 chr4 17415311 17415557 -138214563 - Lx6 LINE L1 -549 6911 6654 5 717 282 319 0 21 chr4 17415561 17415657 -138214463 - L1_Mur3 LINE L1 -317 5563 5470 5 717 929 312 11 0 chr4 17415626 17415892 -138214228 + Lx6 LINE L1 7191 7459 -1 5 717 713 340 33 16 chr4 17415908 17416416 -138213704 + L1M2 LINE L1 4452 5001 -1142 5 717 1012 271 41 7 chr4 17416415 17416705 -138213415 + Lx9 LINE L1 6940 7239 -405 5 717 28 48 0 0 chr4 17416781 17416823 -138213297 + AT_rich Low_complexity Low_complexity 1 42 0 5 717 455 317 97 42 chr4 17417318 17417555 -138212565 + MER82 DNA MER2_type 200 449 -204 5 717 32 26 0 0 chr4 17417765 17417804 -138212316 + AT_rich Low_complexity Low_complexity 1 39 0 5 717 217 338 0 0 chr4 17417942 17418019 -138212101 + GA-rich Low_complexity Low_complexity 3 79 0 5 717 21 0 0 0 chr4 17419737 17419758 -138210362 + AT_rich Low_complexity Low_complexity 1 21 0 5 717 1544 215 19 21 chr4 17420806 17420922 -138209198 + Lx5 LINE L1 919 1034 -6052 5 717 200 34 0 33 chr4 17420922 17420952 -138209168 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 5 717 17246 199 62 54 chr4 17420952 17421910 -138208210 + Lx5 LINE L1 1035 2051 -3826 5 717 264 59 0 0 chr4 17421910 17421944 -138208176 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 717 17246 195 72 61 chr4 17421944 17422363 -138207757 + Lx5 LINE L1 2052 2260 -3617 5 717 8393 27 4 0 chr4 17422363 17423355 -138206765 + L1Md_A LINE L1 5587 6582 0 5 717 17246 195 71 61 chr4 17423355 17426838 -138203282 + Lx5 LINE L1 2261 5947 -1103 5 717 477 0 0 0 chr4 17426838 17426891 -138203229 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 717 6516 218 33 18 chr4 17426891 17427967 -138202153 + Lx5 LINE L1 5948 7047 -3 5 717 1922 186 14 3 chr4 17428017 17428388 -138201732 + Lx LINE L1 6274 6648 -6 5 717 21 36 0 0 chr4 17430220 17430248 -138199872 + AT_rich Low_complexity Low_complexity 1 28 0 5 717 1336 258 20 7 chr4 17431532 17431833 -138198287 + Lx5 LINE L1 6688 6992 -58 5 717 23 54 0 0 chr4 17432018 17432055 -138198065 + AT_rich Low_complexity Low_complexity 1 37 0 5 89 1336 314 58 91 chr4 17432177 17433036 -138197084 + Lx9 LINE L1 6362 7192 -452 5 718 1230 168 16 16 chr4 17433171 17433413 -138196707 + Lx3A LINE L1 6731 6972 -9 5 718 281 175 103 17 chr4 17433599 17433657 -138196463 - Lx9 LINE L1 -380 7264 7202 5 718 1199 206 55 80 chr4 17434155 17434467 -138195653 - ORR1A4 LTR MaLR -9 320 17 5 718 216 210 0 46 chr4 17436219 17436284 -138193836 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 5 718 1505 162 172 9 chr4 17436578 17436926 -138193194 + MTB_Mm LTR MaLR 3 407 0 5 718 429 328 80 21 chr4 17437115 17437352 -138192768 + Lx7 LINE L1 7087 7337 -359 5 718 252 264 15 30 chr4 17437354 17437487 -138192633 + T-rich Low_complexity Low_complexity 2 132 0 5 718 532 326 55 21 chr4 17437732 17437970 -138192150 + Lx7 LINE L1 7010 7255 -441 5 718 1962 186 37 13 chr4 17438150 17438320 -138191800 - RMER1B Other Other -48 1018 843 5 718 5209 40 0 0 chr4 17438320 17438950 -138191170 + L1Md_T LINE L1 5952 6581 -1 5 718 1962 186 37 13 chr4 17438950 17439154 -138190966 - RMER1B Other Other -224 842 635 5 718 5079 176 4 31 chr4 17439167 17439347 -138190773 + Lx2 LINE L1 4940 5106 -780 5 718 987 104 0 0 chr4 17439347 17439482 -138190638 + B1_Mus1 SINE Alu 4 138 -10 5 718 842 0 0 10 chr4 17439482 17439581 -138190539 + (GAA)n Simple_repeat Simple_repeat 2 99 0 5 718 5079 176 4 31 chr4 17439581 17440135 -138189985 + Lx2 LINE L1 5107 5655 -231 5 718 2232 72 119 11 chr4 17440135 17440487 -138189633 + RLTR10 LTR ERVK 1 390 0 5 718 5079 152 27 15 chr4 17440487 17440967 -138189153 + Lx2 LINE L1 5654 6140 -857 5 718 5612 217 53 11 chr4 17440973 17442244 -138187876 - Lx5 LINE L1 -476 6574 5226 5 718 387 0 0 0 chr4 17442244 17442287 -138187833 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 718 5612 202 59 4 chr4 17442287 17442941 -138187179 - Lx5 LINE L1 -652 5225 4544 5 718 3737 214 68 43 chr4 17442939 17443856 -138186264 - Lx5 LINE L1 -3016 2861 1935 5 718 357 24 0 0 chr4 17443856 17443898 -138186222 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 718 3668 230 62 94 chr4 17443898 17444280 -138185840 - Lx5 LINE L1 -3943 1934 1703 5 718 1135 103 0 0 chr4 17444280 17444426 -138185694 + B1_Mm SINE Alu 1 146 -1 5 718 2922 209 92 56 chr4 17444426 17445136 -138184984 - Lx5 LINE L1 -4184 1702 906 5 718 456 277 8 0 chr4 17445454 17445584 -138184536 + Lx7 LINE L1 7559 7689 -7 5 718 1740 255 83 13 chr4 17445587 17446119 -138184001 - RMER1C Other Other 0 1342 774 5 718 33 0 0 0 chr4 17446227 17446260 -138183860 + AT_rich Low_complexity Low_complexity 1 33 0 5 718 399 235 103 17 chr4 17446330 17446447 -138183673 - RSINE1 SINE B4 -38 127 1 5 718 244 138 50 33 chr4 17447002 17447062 -138183058 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 5 718 1557 142 34 0 chr4 17447456 17447724 -138182396 + Lx2 LINE L1 6721 6997 0 5 718 206 260 0 0 chr4 17448390 17448440 -138181680 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 718 658 206 80 21 chr4 17448786 17448965 -138181155 + B3 SINE B2 2 185 -10 5 718 1578 326 34 82 chr4 17449317 17450089 -138180031 + RMER1C Other Other 422 1156 -186 5 718 2946 190 5 35 chr4 17450762 17451074 -138179046 - L1_Mm LINE L1 -276 5607 5305 5 718 2868 43 3 0 chr4 17451074 17451419 -138178701 + ORR1A1 LTR MaLR 1 346 0 5 718 13087 68 24 1 chr4 17451419 17453170 -138176950 + ORR1A1-int LTR MaLR 1 1792 0 5 718 2827 49 3 0 chr4 17453170 17453515 -138176605 + ORR1A1 LTR MaLR 1 346 0 5 718 2946 190 5 35 chr4 17453515 17453837 -138176283 - L1_Mm LINE L1 -579 5304 4992 5 718 2065 128 144 0 chr4 17453838 17454212 -138175908 + Lx LINE L1 5587 6014 -640 5 718 3060 186 91 5 chr4 17455040 17455635 -138174485 + RLTR17 LTR ERVK 1 646 -46 5 718 234 0 0 0 chr4 17455920 17455946 -138174174 + (A)n Simple_repeat Simple_repeat 1 26 0 5 718 225 0 0 0 chr4 17456199 17456224 -138173896 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 718 1036 305 58 22 chr4 17457029 17457388 -138172732 + MTE2a LTR MaLR 6 377 -2 5 718 518 379 23 35 chr4 17458017 17458274 -138171846 - MTE2b LTR MaLR -123 256 3 5 718 21 36 0 0 chr4 17458500 17458528 -138171592 + AT_rich Low_complexity Low_complexity 1 28 0 5 718 808 342 64 35 chr4 17458880 17459276 -138170844 - MTE2b LTR MaLR -39 380 3 5 718 655 342 41 8 chr4 17459326 17459571 -138170549 + MTD LTR MaLR 22 274 -145 5 718 253 246 15 0 chr4 17459708 17459773 -138170347 - L1MB4 LINE L1 -5303 1304 1239 5 718 2225 150 8 0 chr4 17460214 17460580 -138169540 - Lx2 LINE L1 0 6997 6629 5 718 216 97 0 0 chr4 17463230 17463261 -138166859 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 5 718 24 0 0 0 chr4 17463368 17463392 -138166728 + AT_rich Low_complexity Low_complexity 1 24 0 5 718 19709 133 41 74 chr4 17463427 17468737 -138161383 + L1Md_F LINE L1 359 4736 -1150 5 718 315 0 0 0 chr4 17468737 17468772 -138161348 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 718 13643 194 8 192 chr4 17468772 17469631 -138160489 + L1Md_F LINE L1 4737 5587 -299 5 718 6927 89 25 10 chr4 17469632 17470613 -138159507 + L1Md_F2 LINE L1 5587 6582 0 6 718 1988 129 24 6 chr4 17471170 17471498 -138158622 + Lx LINE L1 6318 6651 -3 6 718 29 70 0 0 chr4 17471550 17471607 -138158513 + AT_rich Low_complexity Low_complexity 1 57 0 6 718 4195 125 19 28 chr4 17471686 17472369 -138157751 + RMER17B LTR ERVK 12 688 -270 6 718 1960 301 107 41 chr4 17472491 17473510 -138156610 - Lx6 LINE L1 -26 7434 6131 6 718 757 316 43 14 chr4 17474287 17474579 -138155541 + ORR1D2 LTR MaLR 6 324 -35 6 718 243 0 0 0 chr4 17474599 17474626 -138155494 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 718 423 0 0 0 chr4 17475220 17475267 -138154853 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 718 1941 153 16 0 chr4 17475366 17475680 -138154440 - ORR1A2 LTR MaLR 0 327 9 6 718 256 200 187 0 chr4 17476269 17476344 -138153776 + Lx9 LINE L1 7534 7622 -22 6 718 530 320 111 24 chr4 17476404 17476957 -138153163 + L1MA6 LINE L1 5461 6065 -226 6 718 32 57 0 0 chr4 17477803 17477856 -138152264 + AT_rich Low_complexity Low_complexity 1 53 0 6 718 1297 334 109 70 chr4 17477989 17478992 -138151128 - Lx8 LINE L1 -164 7309 6272 6 718 1140 49 14 0 chr4 17478992 17479134 -138150986 - B1_Mus1 SINE Alu -2 146 3 6 718 1297 334 109 70 chr4 17479134 17479224 -138150896 - Lx8 LINE L1 -1202 6271 6173 6 718 292 77 0 37 chr4 17480428 17480482 -138149638 + (TTA)n Simple_repeat Simple_repeat 3 54 0 6 718 300 111 42 0 chr4 17481635 17481707 -138148413 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 718 850 108 93 0 chr4 17481943 17482072 -138148048 + B1_Mus1 SINE Alu 2 142 -6 6 718 41 0 0 0 chr4 17482073 17482114 -138148006 + AT_rich Low_complexity Low_complexity 1 41 0 6 718 189 197 0 43 chr4 17482695 17482764 -138147356 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 6 718 3868 192 26 12 chr4 17482787 17484094 -138146026 + Lx5 LINE L1 5162 6500 -550 6 718 2186 188 48 6 chr4 17484547 17485071 -138145049 - Lx2 LINE L1 -252 6745 6032 6 718 341 362 31 0 chr4 17485216 17485343 -138144777 + B1_Mur1 SINE Alu 6 136 -13 6 718 24 53 0 0 chr4 17487000 17487038 -138143082 + AT_rich Low_complexity Low_complexity 1 38 0 6 718 468 242 42 0 chr4 17487068 17487163 -138142957 - U6 snRNA snRNA -5 102 4 6 718 217 154 30 30 chr4 17487471 17487538 -138142582 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 6 718 5173 152 14 7 chr4 17487612 17488651 -138141469 - Lx LINE L1 -646 6008 4964 6 718 21 0 0 0 chr4 17488652 17488673 -138141447 + AT_rich Low_complexity Low_complexity 1 21 0 6 718 4311 187 78 52 chr4 17488673 17489625 -138140495 - Lx4A LINE L1 -3 7055 6080 6 718 2450 225 171 9 chr4 17489633 17490289 -138139831 - MTC-int LTR MaLR -495 763 2 6 718 477 162 154 4 chr4 17490288 17490407 -138139713 - MTC LTR MaLR 0 421 274 6 718 4412 176 35 99 chr4 17490407 17490828 -138139292 - Lx5 LINE L1 -487 6563 6111 6 718 1103 0 0 8 chr4 17490828 17490956 -138139164 + (TC)n Simple_repeat Simple_repeat 2 128 0 6 718 4412 176 33 88 chr4 17490956 17491662 -138138458 - Lx5 LINE L1 -940 6110 5500 6 718 3101 50 37 0 chr4 17491775 17492157 -138137963 + MTA_Mm LTR MaLR 1 396 0 6 718 1564 327 29 51 chr4 17492172 17493070 -138137050 + Lx6 LINE L1 6189 7434 -26 6 718 25 0 0 0 chr4 17493475 17493500 -138136620 + AT_rich Low_complexity Low_complexity 1 25 0 6 718 242 269 48 136 chr4 17494048 17494173 -138135947 + MTEb LTR MaLR 63 176 -203 6 718 411 113 0 0 chr4 17495559 17495630 -138134490 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 718 208 250 157 11 chr4 17496333 17496422 -138133698 - MIRb SINE MIR -62 206 105 6 718 338 261 146 22 chr4 17497237 17497373 -138132747 - RMER15 LTR ERVL -5 570 418 6 718 954 315 19 110 chr4 17497373 17497790 -138132330 + MTE2b LTR MaLR 1 379 0 6 718 271 344 47 8 chr4 17498071 17498200 -138131920 - RMER15-int LTR ERVL -20 4979 4846 6 718 9990 35 1 4 chr4 17498267 17500000 -138130120 + L1Md_Gf LINE L1 1 1670 -4216 6 718 32057 38 0 0 chr4 17500000 17503919 -138126201 + L1Md_T LINE L1 1668 5586 -297 1 718 8990 5 0 0 chr4 17503919 17504915 -138125205 + L1Md_T LINE L1 5587 6582 0 1 718 207 0 0 0 chr4 17504936 17504959 -138125161 + (A)n Simple_repeat Simple_repeat 1 23 0 2 718 679 363 79 7 chr4 17505125 17505295 -138124825 - RMER15-int LTR ERVL -389 4610 4414 3 718 2121 115 10 3 chr4 17505295 17505609 -138124511 + L1_Mus3 LINE L1 6317 6632 -6 4 718 679 363 79 7 chr4 17505609 17505879 -138124241 - RMER15-int LTR ERVL -586 4413 4138 3 718 808 315 61 16 chr4 17506114 17506440 -138123680 - ORR1D2 LTR MaLR -4 370 12 5 718 1340 209 51 145 chr4 17506615 17507029 -138123091 + ORR1C1 LTR MaLR 2 376 -2 6 718 252 327 90 56 chr4 17507162 17507340 -138122780 - RMER15 LTR ERVL -391 184 1 7 718 25 0 0 0 chr4 17507717 17507742 -138122378 + AT_rich Low_complexity Low_complexity 1 25 0 8 718 21 36 0 0 chr4 17507884 17507912 -138122208 + AT_rich Low_complexity Low_complexity 1 28 0 9 718 24 0 0 0 chr4 17508902 17508926 -138121194 + AT_rich Low_complexity Low_complexity 1 24 0 1 718 225 0 0 0 chr4 17508970 17508995 -138121125 + (T)n Simple_repeat Simple_repeat 1 25 0 1 718 218 196 0 0 chr4 17509071 17509122 -138120998 + A-rich Low_complexity Low_complexity 1 51 0 1 718 528 317 71 33 chr4 17509406 17509618 -138120502 + MTD LTR MaLR 184 403 -16 1 718 6184 76 5 2 chr4 17509668 17510474 -138119646 + RLTR13C2 LTR ERVK 1 808 0 1 718 252 83 0 62 chr4 17510892 17510956 -138119164 + (TTTTTA)n Simple_repeat Simple_repeat 4 63 0 1 718 189 0 0 0 chr4 17510953 17510974 -138119146 + (CTTTG)n Simple_repeat Simple_repeat 4 24 0 1 718 495 318 8 0 chr4 17511006 17511138 -138118982 - B1_Mur1 SINE Alu -3 146 14 1 718 249 271 79 125 chr4 17511008 17511160 -138118960 - ID_B1 SINE B4 -5 219 75 1 718 342 67 0 0 chr4 17511251 17511296 -138118824 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 718 343 0 43 0 chr4 17511719 17511766 -138118354 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 2 718 5749 157 54 3 chr4 17511766 17512068 -138118052 - Lx LINE L1 -12 6642 6341 2 718 186 43 0 0 chr4 17512068 17512091 -138118029 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 2 718 6785 183 35 9 chr4 17512091 17513888 -138116232 - Lx LINE L1 -314 6340 4477 2 718 2385 102 0 3 chr4 17513898 17514231 -138115889 - L1_Mus1 LINE L1 -2 6565 6234 2 718 28938 136 23 6 chr4 17514231 17519756 -138110364 - L1Md_F LINE L1 -19 5864 243 2 718 12908 177 80 15 chr4 17519766 17522943 -138107177 - Lx LINE L1 -1392 4491 1096 2 718 298 322 165 11 chr4 17523598 17523780 -138106340 + MLT1A1 LTR MaLR 128 337 -71 2 718 417 20 0 0 chr4 17524598 17524648 -138105472 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 718 21 71 0 0 chr4 17524838 17524880 -138105240 + AT_rich Low_complexity Low_complexity 1 42 0 2 718 33230 87 13 7 chr4 17524925 17530910 -138099210 - L1Md_F3 LINE L1 -14 6570 550 2 718 315 120 0 39 chr4 17531226 17531278 -138098842 + HAL1-3A_ME LINE L1 1976 2025 -833 2 718 1084 136 43 0 chr4 17531438 17531622 -138098498 + B2_Mm2 SINE B2 2 193 -2 3 718 681 252 7 0 chr4 17531649 17531784 -138098336 - B1_Mur4 SINE Alu -8 142 7 3 718 509 218 20 126 chr4 17531791 17531990 -138098130 + RMER1B Other Other 869 1046 -20 3 718 5083 112 10 6 chr4 17533155 17533678 -138096442 + Lx3B LINE L1 5387 5905 -1068 3 718 252 0 0 0 chr4 17533678 17533706 -138096414 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 718 4773 75 16 6 chr4 17533716 17534357 -138095763 - L1Md_F2 LINE L1 -15 6567 5921 3 718 5083 159 186 15 chr4 17534357 17535199 -138094921 + Lx3B LINE L1 5915 6930 -51 3 718 300 314 0 10 chr4 17535177 17535280 -138094840 + L1VL2 LINE L1 102 203 -6132 3 718 19851 136 83 5 chr4 17535276 17537530 -138092590 + L1_Mus3 LINE L1 2094 4616 -1267 3 718 2073 122 13 7 chr4 17537530 17537835 -138092285 + RLTR27 LTR ERVK 3 309 0 3 718 19851 128 40 3 chr4 17537835 17539957 -138090163 + L1_Mus3 LINE L1 4617 6638 0 3 718 262 175 16 0 chr4 17539958 17540021 -138090099 + Lx3B LINE L1 6918 6981 0 3 718 30 59 0 0 chr4 17540021 17540072 -138090048 + AT_rich Low_complexity Low_complexity 1 51 0 3 718 21 0 0 0 chr4 17540157 17540178 -138089942 + AT_rich Low_complexity Low_complexity 1 21 0 4 718 335 314 29 0 chr4 17540681 17540818 -138089302 + B1F SINE Alu 2 142 -7 4 718 180 328 17 0 chr4 17540976 17541034 -138089086 + L2a LINE L2 3368 3426 0 4 718 390 291 8 49 chr4 17541611 17541734 -138088386 - PB1D9 SINE Alu 0 120 3 4 718 249 251 47 13 chr4 17541739 17541861 -138088259 - L1M1 LINE L1 -476 5827 5705 4 718 25 0 0 0 chr4 17542206 17542231 -138087889 + AT_rich Low_complexity Low_complexity 1 25 0 4 718 339 208 0 0 chr4 17542359 17542479 -138087641 + GA-rich Low_complexity Low_complexity 1 120 0 4 718 1032 108 0 0 chr4 17542873 17543021 -138087099 + B1_Mus1 SINE Alu 1 148 0 4 718 26 101 0 0 chr4 17543047 17543136 -138086984 + AT_rich Low_complexity Low_complexity 1 89 0 4 718 21 0 0 0 chr4 17543395 17543416 -138086704 + AT_rich Low_complexity Low_complexity 1 21 0 4 718 384 22 0 0 chr4 17543420 17543465 -138086655 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 718 245 132 0 0 chr4 17543749 17543787 -138086333 - Lx LINE L1 -334 6320 6283 5 718 1999 144 30 0 chr4 17543787 17544121 -138085999 + Lx2 LINE L1 6650 6993 -4 5 718 1067 104 69 37 chr4 17544719 17544908 -138085212 - B2_Mm2 SINE B2 0 195 1 5 718 24 32 0 0 chr4 17545150 17545181 -138084939 + AT_rich Low_complexity Low_complexity 1 31 0 5 718 225 301 10 0 chr4 17545425 17545528 -138084592 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 718 22 88 0 0 chr4 17545577 17545634 -138084486 + AT_rich Low_complexity Low_complexity 1 57 0 5 718 556 320 86 39 chr4 17545783 17546040 -138084080 + MTD LTR MaLR 68 336 -83 5 718 720 29 19 0 chr4 17546041 17546200 -138083920 - L1Md_T LINE L1 0 6582 6475 5 718 1520 317 110 26 chr4 17546297 17547213 -138082907 - ERVL-B4-int LTR ERVL -383 5331 4339 5 718 234 322 55 9 chr4 17548017 17548362 -138081758 + L1M2 LINE L1 4944 5304 -839 6 718 268 325 73 88 chr4 17548446 17548702 -138081418 - B4A SINE B4 -28 264 7 6 718 245 269 94 19 chr4 17548827 17548986 -138081134 + L1M2 LINE L1 5414 5584 -728 6 718 1540 190 4 0 chr4 17549157 17549436 -138080684 - Lx5 LINE L1 -139 5738 5459 6 718 2033 254 111 50 chr4 17549432 17550400 -138079720 + Lx5 LINE L1 5744 6544 -506 6 718 252 143 0 0 chr4 17550733 17550775 -138079345 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 718 253 91 0 0 chr4 17551204 17551237 -138078883 + L1_Mus2 LINE L1 6341 6373 -193 6 718 1391 90 19 14 chr4 17551239 17551454 -138078666 + L1Md_F2 LINE L1 6354 6569 -13 6 718 1161 74 0 0 chr4 17551811 17551959 -138078161 + B1_Mus1 SINE Alu 1 148 0 6 718 21 0 0 0 chr4 17552005 17552026 -138078094 + AT_rich Low_complexity Low_complexity 1 21 0 6 718 354 245 46 0 chr4 17552796 17552947 -138077173 - Lx9 LINE L1 -8 7636 7479 6 718 1477 160 32 7 chr4 17553539 17553823 -138076297 + L1_Mur1 LINE L1 3755 4045 -1841 6 718 1736 184 0 0 chr4 17553869 17554168 -138075952 + Lx2 LINE L1 6638 6936 -61 7 718 3519 148 70 3 chr4 17554171 17554783 -138075337 + Lx3A LINE L1 6322 6974 -7 7 718 43 47 0 0 chr4 17554783 17554847 -138075273 + AT_rich Low_complexity Low_complexity 1 64 0 7 718 3048 256 50 30 chr4 17555579 17556230 -138073890 + Lx6 LINE L1 6225 6878 -582 7 718 2631 174 48 24 chr4 17556230 17556773 -138073347 - Lx2B LINE L1 0 7000 6445 7 718 3048 274 328 19 chr4 17556773 17557106 -138073014 + Lx6 LINE L1 6879 7325 -135 7 718 9588 25 0 0 chr4 17557097 17558237 -138071883 - L1Md_T LINE L1 -1228 4655 3516 7 718 8109 16 0 0 chr4 17558235 17559164 -138070956 + L1Md_T LINE L1 4658 5586 -297 7 718 8954 6 0 0 chr4 17559164 17560193 -138069927 + L1Md_T LINE L1 5587 6582 0 7 718 493 224 82 0 chr4 17560266 17560400 -138069720 + Lx6 LINE L1 7313 7457 -3 7 718 31 0 0 0 chr4 17560407 17560438 -138069682 + AT_rich Low_complexity Low_complexity 1 31 0 7 718 843 107 280 0 chr4 17560737 17560887 -138069233 - L1_Mm LINE L1 -187 5696 5505 7 718 2777 51 0 19 chr4 17560887 17561247 -138068873 + L1_Mus1 LINE L1 6212 6564 -3 7 718 271 383 0 0 chr4 17561283 17561364 -138068756 + B4A SINE B4 2 82 -210 7 718 354 23 0 0 chr4 17561604 17561647 -138068473 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 718 330 167 0 0 chr4 17561648 17561708 -138068412 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 718 1113 82 0 0 chr4 17561854 17562012 -138068108 - ORR1A1 LTR MaLR -188 158 1 8 718 1019 146 0 12 chr4 17562058 17562218 -138067902 + Lx LINE L1 6083 6240 -414 8 719 470 318 80 11 chr4 17564007 17564182 -138065938 - B3A SINE B2 -11 187 1 8 719 22 0 0 0 chr4 17564760 17564782 -138065338 + AT_rich Low_complexity Low_complexity 1 22 0 8 719 28 29 0 0 chr4 17565107 17565142 -138064978 + AT_rich Low_complexity Low_complexity 1 35 0 8 719 320 387 9 0 chr4 17565273 17565384 -138064736 + PB1D10 SINE Alu 1 112 -5 8 719 772 349 67 96 chr4 17565654 17566405 -138063715 + MLT1E2-int LTR MaLR 641 1326 -45 8 719 227 295 146 13 chr4 17566423 17566574 -138063546 + MLT1E2 LTR MaLR 19 189 -438 8 719 405 344 92 10 chr4 17567457 17567762 -138062358 - Lx8 LINE L1 -266 7207 6878 8 719 276 153 0 81 chr4 17567779 17567928 -138062192 + GA-rich Low_complexity Low_complexity 2 138 0 9 719 563 333 138 0 chr4 17567937 17568166 -138061954 - Lx9 LINE L1 -921 6723 6466 9 719 207 0 0 0 chr4 17568166 17568189 -138061931 + (TA)n Simple_repeat Simple_repeat 1 23 0 9 719 189 0 0 0 chr4 17568190 17568211 -138061909 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 719 563 333 138 0 chr4 17568211 17568297 -138061823 - Lx9 LINE L1 -1179 6465 6366 9 719 199 50 75 0 chr4 17568675 17568715 -138061405 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 9 719 414 101 0 0 chr4 17569779 17569848 -138060272 + (GA)n Simple_repeat Simple_repeat 1 69 0 9 719 323 341 48 108 chr4 17571088 17571440 -138058680 + L1ME3A LINE L1 4942 5272 -874 9 719 330 279 189 17 chr4 17571503 17571736 -138058384 + L1ME3A LINE L1 5350 5622 -551 9 719 240 238 0 0 chr4 17571764 17571827 -138058293 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 719 271 317 138 4 chr4 17571955 17572224 -138057896 + L1ME3A LINE L1 5850 6154 -19 9 719 201 74 0 0 chr4 17572691 17572718 -138057402 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 719 1823 220 13 5 chr4 17573173 17573562 -138056558 - ORR1B1 LTR MaLR 0 394 3 9 719 5337 183 55 70 chr4 17573564 17573844 -138056276 - ORR1B1-int LTR MaLR 0 1963 1756 9 719 3202 190 18 24 chr4 17573844 17574459 -138055661 - RMER19C LTR ERVK 0 611 1 1 719 5337 183 55 70 chr4 17574459 17575443 -138054677 - ORR1B1-int LTR MaLR -208 1755 718 9 719 969 223 93 80 chr4 17575375 17575687 -138054433 - MT2B LTR ERVL -285 316 1 1 719 1333 173 8 38 chr4 17575687 17575858 -138054262 - ORR1B1-int LTR MaLR -1351 612 450 9 719 570 182 55 0 chr4 17575863 17575973 -138054147 - ORR1B1-int LTR MaLR -1847 116 1 9 719 227 203 141 0 chr4 17575973 17576037 -138054083 - ORR1B1 LTR MaLR 0 329 257 9 719 1733 241 108 28 chr4 17578228 17578736 -138051384 + Lx9 LINE L1 6450 6998 -646 1 719 6781 186 21 21 chr4 17578933 17580260 -138049860 - Lx3B LINE L1 -2 6971 5645 1 719 1064 168 50 0 chr4 17580264 17580484 -138049636 + Lx2A1 LINE L1 6774 7004 -4 1 719 2131 256 126 3 chr4 17580508 17580664 -138049456 + MYSERV-int LTR ERVK 5540 5741 -809 1 719 511 99 10 10 chr4 17580664 17580766 -138049354 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 1 719 2131 256 126 3 chr4 17580766 17581326 -138048794 + MYSERV-int LTR ERVK 5742 6343 -207 1 719 342 0 0 0 chr4 17581327 17581365 -138048755 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 1 719 311 133 7 2 chr4 17581441 17581495 -138048625 + ORR1A4 LTR MaLR 283 374 0 1 719 227 310 17 0 chr4 17581498 17581556 -138048564 - ID_B1 SINE B4 -130 94 36 1 719 215 339 0 0 chr4 17581510 17581569 -138048551 - ID4_ SINE ID -3 80 22 1 719 289 375 26 9 chr4 17581903 17582016 -138048104 + ID_B1 SINE B4 110 224 0 1 719 2078 243 43 72 chr4 17582026 17582634 -138047486 - RMER20B LTR ERVK -2 625 36 1 719 2953 44 10 77 chr4 17582654 17583072 -138047048 - RLTR10 LTR ERVK 0 390 1 1 719 13137 30 4 1 chr4 17583072 17584949 -138045171 - RLTR10-int LTR ERVK -1 1986 1 1 719 2953 44 10 77 chr4 17584949 17585367 -138044753 - RLTR10 LTR ERVK 0 390 1 1 719 1536 79 37 0 chr4 17585978 17586230 -138043890 + L1Md_F3 LINE L1 6349 6584 0 1 719 468 48 0 0 chr4 17586510 17586573 -138043547 + (T)n Simple_repeat Simple_repeat 1 63 0 1 719 288 0 0 0 chr4 17587496 17587528 -138042592 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 719 5216 122 78 11 chr4 17587552 17588428 -138041692 + Lx2 LINE L1 6045 6978 -19 1 719 22 70 0 0 chr4 17588466 17588509 -138041611 + AT_rich Low_complexity Low_complexity 1 43 0 1 719 235 298 21 21 chr4 17588509 17588605 -138041515 + Lx8 LINE L1 7002 7097 -376 1 719 439 318 56 23 chr4 17588658 17588874 -138041246 + Lx8 LINE L1 7222 7444 -29 1 719 258 106 0 0 chr4 17588986 17589033 -138041087 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 719 20706 79 12 5 chr4 17589049 17592648 -138037472 - L1Md_F2 LINE L1 -11 6571 2943 1 719 890 129 57 0 chr4 17592675 17592815 -138037305 + B1_Mus1 SINE Alu 1 148 0 1 719 190 89 43 22 chr4 17592815 17592861 -138037259 + A-rich Low_complexity Low_complexity 6 52 0 1 719 4999 176 13 14 chr4 17593081 17593989 -138036131 + Lx4A LINE L1 5759 6665 -393 1 719 486 121 0 0 chr4 17593988 17594054 -138036066 - Lx3_Mus LINE L1 -459 6550 6485 1 719 924 265 184 20 chr4 17594048 17594669 -138035451 - Lx7 LINE L1 -1556 6140 5432 1 719 1075 279 95 52 chr4 17594693 17595394 -138034726 + Lx7 LINE L1 6846 7696 0 1 719 269 274 147 0 chr4 17595570 17595665 -138034455 + PB1D10 SINE Alu 7 115 -2 1 719 287 333 0 0 chr4 17595827 17595947 -138034173 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 719 700 262 74 29 chr4 17596344 17596588 -138033532 - MER58B DNA MER1_type -16 325 71 1 719 222 357 14 0 chr4 17598001 17598071 -138032049 - BC1_Mm scRNA scRNA -60 92 22 1 719 317 289 90 60 chr4 17598037 17598203 -138031917 - RMER15 LTR ERVL -58 517 347 1 719 456 51 0 0 chr4 17599872 17599931 -138030189 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 719 309 398 0 10 chr4 17599968 17600072 -138030048 - RSINE1 SINE B4 -31 134 32 1 719 310 331 139 8 chr4 17600191 17600313 -138029807 - RMER15 LTR ERVL -25 550 413 1 719 1663 330 48 31 chr4 17600331 17601148 -138028972 - Lx8 LINE L1 -438 7035 6205 1 719 520 241 42 16 chr4 17601145 17601335 -138028785 + L1_Mur3 LINE L1 3543 3737 -2143 1 719 2535 197 116 12 chr4 17601339 17602146 -138027974 + Lx2B LINE L1 5411 6277 -723 1 719 1793 254 41 37 chr4 17602129 17602640 -138027480 + Lx2B LINE L1 6460 6972 -4 1 719 781 298 102 36 chr4 17602651 17603291 -138026829 + L1_Mur3 LINE L1 3730 4411 -1469 1 719 696 301 85 5 chr4 17603316 17603516 -138026604 - B3 SINE B2 0 216 1 1 719 1190 305 36 57 chr4 17603524 17604303 -138025817 + L1_Mur3 LINE L1 4422 5184 -696 1 719 3209 222 33 11 chr4 17604710 17605818 -138024302 + L1_Mur2 LINE L1 940 2071 -3815 1 719 1199 195 21 0 chr4 17605822 17606058 -138024062 - L1_Mur2 LINE L1 -720 5157 4917 1 719 3698 143 121 3 chr4 17606055 17606756 -138023364 - L1_Mm LINE L1 -2027 3856 3073 1 719 4277 162 103 7 chr4 17606762 17607675 -138022445 + L1_Mur2 LINE L1 3448 4448 -1429 1 719 185 65 32 0 chr4 17607684 17607715 -138022405 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 719 21 36 0 0 chr4 17607848 17607876 -138022244 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 1125 61 67 0 chr4 17608777 17608941 -138021179 + L1_Mus2 LINE L1 6392 6566 0 1 719 724 266 78 52 chr4 17609760 17610094 -138020026 - MLT1A0 LTR MaLR 0 408 34 1 719 25 31 0 0 chr4 17610307 17610339 -138019781 + AT_rich Low_complexity Low_complexity 1 32 0 1 719 546 16 0 0 chr4 17610558 17610621 -138019499 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 719 25 65 0 0 chr4 17611107 17611153 -138018967 + AT_rich Low_complexity Low_complexity 1 46 0 1 719 22 0 0 0 chr4 17611628 17611650 -138018470 + AT_rich Low_complexity Low_complexity 1 22 0 1 719 200 255 13 78 chr4 17611769 17611922 -138018198 + T-rich Low_complexity Low_complexity 3 145 0 1 719 288 281 132 22 chr4 17612070 17612161 -138017959 + B3A SINE B2 9 109 -89 1 719 862 201 20 49 chr4 17612164 17612368 -138017752 - L1_Mur3 LINE L1 -93 5787 5590 1 719 333 0 0 0 chr4 17612372 17612409 -138017711 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1 719 6490 113 65 6 chr4 17612420 17613733 -138016387 - L1_Mus3 LINE L1 -16 6622 5249 1 719 444 67 0 0 chr4 17613733 17613793 -138016327 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 719 5311 145 21 21 chr4 17613793 17614055 -138016065 - L1_Mus3 LINE L1 -635 5248 4978 1 719 2095 191 81 2 chr4 17614067 17614486 -138015634 + L1VL1 LINE L1 276 727 -5695 1 719 4735 62 2 0 chr4 17614473 17615075 -138015045 + L1_Mm LINE L1 4983 5585 -298 1 719 2546 129 37 5 chr4 17615061 17615076 -138015044 + L1VL2 LINE L1 597 612 -5723 1 719 8085 40 9 3 chr4 17615076 17616066 -138014054 + L1Md_F2 LINE L1 5587 6582 0 1 719 9528 123 43 29 chr4 17616066 17617198 -138012922 + L1VL2 LINE L1 613 1772 -1843 1 719 4103 82 3 24 chr4 17617198 17617772 -138012348 + LTRIS2 LTR ERV1 3 564 0 1 719 9528 121 45 37 chr4 17617772 17618034 -138012086 + L1VL2 LINE L1 1773 2028 -1587 1 719 2654 69 0 3 chr4 17618034 17618381 -138011739 + ORR1A0 LTR MaLR 1 346 0 1 719 9528 121 45 37 chr4 17618381 17618978 -138011142 + L1VL2 LINE L1 2029 2633 -982 1 719 1989 200 31 7 chr4 17618964 17619387 -138010733 - L1_Mur2 LINE L1 -281 5599 5167 1 719 5795 159 42 46 chr4 17619387 17619900 -138010220 - RLTR25A LTR ERVK 0 1103 606 1 719 2329 64 3 22 chr4 17619900 17620220 -138009900 - L1Md_F2 LINE L1 0 6582 6269 1 719 5795 159 42 46 chr4 17620220 17620813 -138009307 - RLTR25A LTR ERVK -498 605 1 1 719 2736 215 54 131 chr4 17620813 17620994 -138009126 - L1_Mur2 LINE L1 -706 5171 4988 1 719 1067 87 0 0 chr4 17620994 17621132 -138008988 + B1_Mus2 SINE Alu 1 138 -9 1 719 2736 215 54 131 chr4 17621132 17622124 -138007996 - L1_Mur2 LINE L1 -890 4987 4089 1 719 4125 164 4 42 chr4 17622268 17623099 -138007021 - L1_Mur2 LINE L1 -679 5500 4670 1 719 2469 114 19 13 chr4 17623100 17623473 -138006647 + Lx2 LINE L1 6447 6821 -176 1 719 834 127 0 0 chr4 17623479 17623605 -138006515 + ORR1B1 LTR MaLR 261 386 -8 1 719 241 262 0 15 chr4 17623735 17623801 -138006319 + (CATA)n Simple_repeat Simple_repeat 2 66 0 1 719 329 319 43 0 chr4 17623879 17624017 -138006103 - B1F SINE Alu -5 144 1 1 719 297 268 2 7 chr4 17624456 17624560 -138005560 - L1_Mur3 LINE L1 -1757 4386 4264 1 719 21 82 0 0 chr4 17624577 17624626 -138005494 + AT_rich Low_complexity Low_complexity 1 49 0 1 719 2192 65 11 0 chr4 17624927 17625203 -138004917 + L1_Mm LINE L1 5404 5682 -201 1 719 1854 192 59 3 chr4 17625348 17625723 -138004397 + Lx LINE L1 6258 6653 -1 1 719 22 0 0 0 chr4 17626774 17626796 -138003324 + AT_rich Low_complexity Low_complexity 1 22 0 1 719 453 329 49 49 chr4 17626902 17627065 -138003055 - RSINE1 SINE B4 0 165 3 1 719 404 305 0 0 chr4 17627094 17627176 -138002944 + PB1D9 SINE Alu 1 82 -38 1 719 7237 38 9 0 chr4 17627492 17628367 -138001753 - L1Md_F3 LINE L1 0 6584 5702 1 719 1160 96 0 6 chr4 17628551 17628729 -138001391 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 1 719 348 119 0 0 chr4 17628729 17628788 -138001332 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 1 719 609 293 32 11 chr4 17629320 17629510 -138000610 + Lx8 LINE L1 6227 6420 -1053 1 719 689 342 71 28 chr4 17629511 17629875 -138000245 + MTE-int LTR MaLR 1193 1572 -8 1 719 258 349 0 12 chr4 17630204 17630288 -137999832 + MTEb LTR MaLR 285 367 -12 1 719 1110 88 0 0 chr4 17630954 17631101 -137999019 + B1_Mus1 SINE Alu 2 148 0 1 719 655 284 163 30 chr4 17631119 17631525 -137998595 - Lx9 LINE L1 -240 7404 6945 1 719 219 146 0 0 chr4 17632204 17632245 -137997875 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 719 232 239 0 0 chr4 17632331 17632377 -137997743 - Lx5 LINE L1 -462 7234 7189 1 719 24 32 0 0 chr4 17632512 17632543 -137997577 + AT_rich Low_complexity Low_complexity 1 31 0 1 719 2779 185 61 54 chr4 17632880 17633332 -137996788 + RMER6C LTR ERVK 1 467 -223 1 719 2695 70 0 3 chr4 17633332 17633689 -137996431 + L1_Mus1 LINE L1 6204 6559 -8 1 719 2779 185 61 54 chr4 17633689 17633921 -137996199 + RMER6C LTR ERVK 468 690 0 1 719 354 271 43 70 chr4 17634157 17634272 -137995848 + RSINE1 SINE B4 54 165 0 1 719 457 331 0 28 chr4 17634284 17634575 -137995545 + (CA)n Simple_repeat Simple_repeat 1 282 0 1 719 319 341 6 18 chr4 17634527 17634697 -137995423 + (CATATA)n Simple_repeat Simple_repeat 4 171 0 1 719 25 75 0 0 chr4 17634702 17634755 -137995365 + AT_rich Low_complexity Low_complexity 1 53 0 1 719 1034 299 57 34 chr4 17634997 17635347 -137994773 - MTE2b LTR MaLR -4 375 18 1 719 1361 254 111 22 chr4 17636374 17636423 -137993697 + MTC LTR MaLR 31 76 -345 1 719 2950 26 6 0 chr4 17636423 17636767 -137993353 - ORR1A0 LTR MaLR 0 346 1 1 719 1361 254 111 22 chr4 17636767 17637076 -137993044 + MTC LTR MaLR 77 421 0 1 719 329 301 53 9 chr4 17637152 17637364 -137992756 - Lx5 LINE L1 -1154 5896 5668 1 719 478 311 38 33 chr4 17637401 17637614 -137992506 + Lx8 LINE L1 6197 6410 -1063 1 719 571 236 156 19 chr4 17637627 17637841 -137992279 - MTD LTR MaLR -5 414 181 2 719 498 71 0 58 chr4 17637843 17637963 -137992157 + (TTTTG)n Simple_repeat Simple_repeat 2 114 0 2 719 518 318 15 31 chr4 17637970 17638165 -137991955 - MTD LTR MaLR -215 204 13 2 719 400 284 64 17 chr4 17638229 17638401 -137991719 - MTD-int LTR MaLR -18 1240 1061 2 719 277 313 30 10 chr4 17638430 17638530 -137991590 - MTD-int LTR MaLR -1136 122 21 2 719 887 183 69 23 chr4 17638556 17638729 -137991391 - MTD LTR MaLR -1 418 238 2 719 23 0 0 0 chr4 17638729 17638752 -137991368 + AT_rich Low_complexity Low_complexity 1 23 0 2 719 252 143 0 0 chr4 17638752 17638794 -137991326 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 719 34197 70 8 4 chr4 17638809 17644960 -137985160 - L1Md_F2 LINE L1 -3 6582 305 2 719 609 291 34 29 chr4 17644964 17645169 -137984951 - MTD LTR MaLR -213 206 1 2 719 1762 328 75 34 chr4 17645211 17646045 -137984075 + Lx8 LINE L1 6456 7324 -149 1 719 2281 132 8 3 chr4 17646153 17646510 -137983610 + Lx2 LINE L1 6638 6996 -1 2 719 28 61 0 0 chr4 17646512 17646561 -137983559 + AT_rich Low_complexity Low_complexity 1 49 0 2 719 335 121 17 0 chr4 17647300 17647358 -137982762 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2 719 798 193 21 0 chr4 17647370 17647515 -137982605 + B1_Mur2 SINE Alu 1 148 -1 2 719 7828 36 0 0 chr4 17647736 17648664 -137981456 + L1Md_T LINE L1 5653 6580 -2 2 719 368 304 133 0 chr4 17649005 17649177 -137980943 - MER58B DNA MER1_type -144 197 1 2 719 180 189 13 26 chr4 17649809 17649885 -137980235 + A-rich Low_complexity Low_complexity 3 77 0 2 719 541 267 37 99 chr4 17649885 17650047 -137980073 + RSINE1 SINE B4 14 165 0 2 719 203 254 31 16 chr4 17650100 17650164 -137979956 + CT-rich Low_complexity Low_complexity 2 66 0 2 719 353 349 74 25 chr4 17650225 17650469 -137979651 + L1M4b LINE L1 155 410 -6924 2 719 304 333 97 0 chr4 17651020 17651215 -137978905 + L1M4b LINE L1 4048 4261 -2745 2 719 33336 85 5 13 chr4 17651559 17652923 -137977197 - L1Md_F2 LINE L1 -4 6578 5226 2 719 5768 50 4 0 chr4 17652923 17653639 -137976481 - L1Md_F3 LINE L1 0 6584 5866 2 719 33336 91 14 3 chr4 17653639 17658309 -137971811 - L1Md_F2 LINE L1 -658 5225 503 2 719 279 232 14 0 chr4 17658305 17658374 -137971746 - L1Md_F LINE L1 -5986 533 464 2 719 288 326 0 0 chr4 17658914 17659012 -137971108 - LTR41 LTR ERVL -55 713 616 2 719 6214 70 2 5 chr4 17659021 17659829 -137970291 + L1Md_F2 LINE L1 5642 6447 -135 2 719 1990 53 0 93 chr4 17659829 17660142 -137969978 - RLTR10B LTR ERVK 0 292 9 2 719 307 95 0 0 chr4 17660162 17660204 -137969916 - RLTR10B LTR ERVK -250 42 1 2 719 959 45 0 8 chr4 17660204 17660338 -137969782 + L1Md_F2 LINE L1 6442 6574 -8 2 719 1090 67 0 0 chr4 17661247 17661382 -137968738 + B1_Mm SINE Alu 2 136 -11 2 719 315 0 0 0 chr4 17661488 17661523 -137968597 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 719 1948 280 77 17 chr4 17661568 17662207 -137967913 - Lx5 LINE L1 -20 7030 6426 2 719 23 33 0 0 chr4 17662490 17662520 -137967600 + AT_rich Low_complexity Low_complexity 1 30 0 2 719 243 268 0 68 chr4 17664190 17664278 -137965842 + CT-rich Low_complexity Low_complexity 4 85 0 2 719 1448 233 88 40 chr4 17664279 17664776 -137965344 + RLTR11A2 LTR ERVK 5 525 -2 2 719 264 77 0 0 chr4 17664804 17664843 -137965277 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 2 719 21 0 0 0 chr4 17665236 17665257 -137964863 + AT_rich Low_complexity Low_complexity 1 21 0 2 719 539 333 90 56 chr4 17665471 17665792 -137964328 - LTR41 LTR ERVL -5 763 432 2 719 387 41 0 0 chr4 17666194 17666243 -137963877 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 719 357 326 130 22 chr4 17666253 17666391 -137963729 - B3A SINE B2 -41 157 5 2 719 21 57 0 0 chr4 17667196 17667231 -137962889 + AT_rich Low_complexity Low_complexity 1 35 0 2 719 5896 184 60 51 chr4 17667445 17669379 -137960741 + L1_Mus4 LINE L1 4547 6429 -207 2 719 3183 61 5 0 chr4 17669379 17669773 -137960347 - MTA_Mm LTR MaLR 0 396 1 2 719 3440 185 64 137 chr4 17669773 17669995 -137960125 + L1_Mus4 LINE L1 6430 6632 -4 2 719 2679 198 92 7 chr4 17670070 17670681 -137959439 - Lx4A LINE L1 -501 6557 5895 2 719 1140 129 6 0 chr4 17670680 17670858 -137959262 + Lx4A LINE L1 6538 6716 -342 2 719 289 287 17 77 chr4 17670858 17670975 -137959145 + RMER12 LTR ERVK 718 827 -495 2 719 195 42 0 0 chr4 17670975 17670999 -137959121 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 719 299 250 16 104 chr4 17671004 17671115 -137959005 + RMER12 LTR ERVK 724 825 -497 2 719 564 42 0 0 chr4 17671115 17671186 -137958934 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 719 299 250 16 104 chr4 17671186 17671199 -137958921 + RMER12 LTR ERVK 826 837 -485 2 719 1468 146 78 7 chr4 17671202 17671472 -137958648 + Lx4A LINE L1 6769 7057 -1 2 719 25 0 0 0 chr4 17671482 17671507 -137958613 + AT_rich Low_complexity Low_complexity 1 25 0 2 719 511 147 72 18 chr4 17671544 17671655 -137958465 + Lx4A LINE L1 6939 7055 -3 2 719 21 0 0 0 chr4 17671657 17671678 -137958442 + AT_rich Low_complexity Low_complexity 1 21 0 2 719 34766 34 1 7 chr4 17671695 17676870 -137953250 + L1Md_T LINE L1 452 5586 -297 2 719 8444 34 0 0 chr4 17676870 17677866 -137952254 + L1Md_T LINE L1 5587 6582 0 2 719 212 207 32 79 chr4 17678307 17678370 -137951750 + MIRb SINE MIR 111 170 -38 2 719 615 51 0 0 chr4 17679719 17679798 -137950322 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 719 210 37 0 0 chr4 17679798 17679825 -137950295 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 719 244 211 0 53 chr4 17680400 17680475 -137949645 + L1M3e LINE L1 47 117 -6913 2 719 495 167 0 0 chr4 17682288 17682384 -137947736 + Lx2 LINE L1 6548 6643 -354 2 719 1109 153 37 28 chr4 17682384 17682599 -137947521 + Lx2 LINE L1 6775 6991 -6 2 719 7781 93 6 11 chr4 17682794 17684104 -137946016 - L1_Mus2 LINE L1 -1 6565 5256 2 719 480 18 0 0 chr4 17684104 17684161 -137945959 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 719 7781 119 16 39 chr4 17684161 17684886 -137945234 - L1_Mus2 LINE L1 -628 5255 4562 2 719 801 315 70 30 chr4 17684936 17685377 -137944743 + Lx9 LINE L1 6585 7043 -601 2 719 180 0 0 0 chr4 17686133 17686153 -137943967 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 719 2518 59 9 0 chr4 17686633 17686956 -137943164 - IAPEY2_LTR LTR ERVK 0 357 32 2 719 680 286 111 89 chr4 17686972 17687341 -137942779 - MTE2a LTR MaLR -2 377 1 2 719 207 0 0 0 chr4 17687705 17687728 -137942392 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 2 719 240 200 125 62 chr4 17687740 17687820 -137942300 + RMER30 DNA MER1_type 116 200 -2 2 719 534 300 93 16 chr4 17687895 17688088 -137942032 - B3 SINE B2 -3 213 6 2 719 257 51 0 25 chr4 17688718 17688758 -137941362 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 719 246 32 0 0 chr4 17688864 17688895 -137941225 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 719 5796 119 8 5 chr4 17689093 17690733 -137939387 + L1VL4 LINE L1 194 1838 -1721 2 719 12498 191 42 97 chr4 17690757 17692222 -137937898 + L1_Mus3 LINE L1 701 2173 -3704 2 719 4158 113 3 11 chr4 17692222 17692864 -137937256 + L1_Mus3 LINE L1 5996 6632 -6 2 89 12498 200 56 152 chr4 17692864 17695067 -137935053 + L1_Mus3 LINE L1 2174 3885 -1992 2 720 7742 49 17 7 chr4 17695067 17696053 -137934067 + L1Md_F2 LINE L1 5587 6582 0 2 720 12498 200 56 152 chr4 17696053 17696903 -137933217 + L1_Mus3 LINE L1 3886 4724 -1153 2 720 207 0 0 0 chr4 17696903 17696926 -137933194 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 720 12498 200 56 152 chr4 17696926 17697584 -137932536 + L1_Mus3 LINE L1 4725 5384 -493 2 720 2778 33 126 3 chr4 17697584 17697950 -137932170 - IAPLTR2a LTR ERVK 0 411 1 2 720 12498 120 22 27 chr4 17697950 17699182 -137930938 + L1_Mus3 LINE L1 5385 6632 -6 2 720 1358 164 4 52 chr4 17699186 17699457 -137930663 + Lx2 LINE L1 6081 6338 -659 2 720 23 33 0 0 chr4 17700151 17700181 -137929939 + AT_rich Low_complexity Low_complexity 1 30 0 2 720 186 43 0 0 chr4 17700639 17700662 -137929458 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 2 720 832 233 115 0 chr4 17701852 17702165 -137927955 + L1_Mur3 LINE L1 852 1200 -6512 2 720 3064 172 9 6 chr4 17702193 17702730 -137927390 + Lx4A LINE L1 6520 7058 0 2 720 3398 30 2 0 chr4 17702906 17703301 -137926819 - MTA_Mm LTR MaLR 0 396 1 2 720 863 248 30 30 chr4 17703707 17703940 -137926180 + MTC LTR MaLR 1 233 -188 2 720 2654 65 30 0 chr4 17703940 17704276 -137925844 - ORR1A1 LTR MaLR 0 346 1 2 720 1545 81 18 18 chr4 17704276 17704503 -137925617 - ORR1A1-int LTR MaLR 0 1792 1566 2 720 36517 7 2 7 chr4 17704503 17709486 -137920634 + L1Md_A LINE L1 634 5586 -297 2 720 8933 10 0 0 chr4 17709486 17710482 -137919638 + L1Md_A LINE L1 5587 6582 0 2 720 3575 87 26 2 chr4 17710483 17710991 -137919129 - ORR1A1-int LTR MaLR -194 1598 1079 2 720 573 111 10 0 chr4 17711233 17711332 -137918788 - L1_Mus3 LINE L1 -6 6632 6533 2 720 2213 98 9 0 chr4 17711333 17711648 -137918472 + L1_Mus2 LINE L1 5959 6276 -290 2 720 245 75 0 24 chr4 17712091 17712132 -137917988 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 720 181 191 0 45 chr4 17712270 17712314 -137917806 - L3 LINE CR1 -2505 1984 1943 2 720 225 196 0 0 chr4 17713852 17713903 -137916217 + CT-rich Low_complexity Low_complexity 3 53 0 2 720 1528 172 11 3 chr4 17715113 17715398 -137914722 + Lx3A LINE L1 6688 6974 -7 2 720 521 298 10 19 chr4 17715612 17715821 -137914299 + L1M2 LINE L1 5573 5779 -512 2 720 211 28 56 0 chr4 17716113 17716149 -137913971 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 720 536 29 58 19 chr4 17716149 17716253 -137913867 + (GTTTG)n Simple_repeat Simple_repeat 2 109 0 2 720 240 286 32 0 chr4 17718090 17718153 -137911967 - RMER5 LTR ERV1 -437 97 33 2 720 2289 203 50 14 chr4 17718289 17718773 -137911347 - RLTR18B LTR ERVK -11 501 1 2 720 1481 271 51 68 chr4 17718832 17719106 -137911014 - Lx8 LINE L1 -55 7418 7150 2 720 1716 178 18 59 chr4 17719106 17719446 -137910674 + ORR1A3 LTR MaLR 1 326 0 2 720 1481 271 51 68 chr4 17719446 17719836 -137910284 - Lx8 LINE L1 -324 7149 6765 2 720 27 0 0 0 chr4 17719848 17719875 -137910245 + AT_rich Low_complexity Low_complexity 1 27 0 2 720 191 36 36 0 chr4 17719897 17719925 -137910195 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2 720 1106 300 17 36 chr4 17719953 17720313 -137909807 - Lx5 LINE L1 -36 7014 6662 2 720 877 277 20 49 chr4 17720320 17720365 -137909755 - Lx8 LINE L1 -725 6748 6705 2 720 2583 169 150 35 chr4 17720365 17720671 -137909449 + RMER6C LTR ERVK 1 324 -366 2 720 1277 43 6 0 chr4 17720671 17720835 -137909285 + (GGGAGA)n Simple_repeat Simple_repeat 3 167 0 2 720 2583 169 150 35 chr4 17720835 17721147 -137908973 + RMER6C LTR ERVK 325 689 -1 2 720 877 277 20 49 chr4 17721147 17721447 -137908673 - Lx8 LINE L1 -769 6704 6413 2 720 1137 316 46 17 chr4 17721458 17722214 -137907906 - RMER1B Other Other -546 520 1 2 720 374 0 22 0 chr4 17722513 17722559 -137907561 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 720 459 0 0 0 chr4 17723700 17723751 -137906369 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 720 1104 89 0 0 chr4 17723895 17724041 -137906079 + B1_Mm SINE Alu 1 146 -1 2 720 347 261 57 50 chr4 17724091 17724232 -137905888 + L1MEc LINE L1 1056 1197 -5203 2 720 1730 221 5 138 chr4 17724237 17724793 -137905327 + Lx5 LINE L1 6553 7058 0 3 720 6787 234 99 18 chr4 17724791 17727776 -137902344 + Lx6 LINE L1 4209 7448 -12 3 720 807 208 122 111 chr4 17727982 17728344 -137901776 + ORR1D1 LTR MaLR 5 370 -4 3 720 747 297 0 0 chr4 17728827 17729012 -137901108 + B3 SINE B2 1 185 -31 3 720 963 284 161 46 chr4 17729188 17729934 -137900186 + L1MB8 LINE L1 5341 6172 -6 3 720 399 280 74 8 chr4 17729944 17730199 -137899921 + L1MEc LINE L1 2244 2512 -3807 2 720 731 329 87 39 chr4 17730782 17731114 -137899006 - ORR1E LTR MaLR -11 348 1 3 720 311 312 70 35 chr4 17731457 17731686 -137898434 + L1MEc LINE L1 4103 4339 -1980 2 720 678 269 39 29 chr4 17731782 17731989 -137898131 - B3 SINE B2 -6 210 2 3 720 392 264 46 46 chr4 17732866 17733017 -137897103 + RSINE1 SINE B4 6 156 -9 3 720 607 181 9 0 chr4 17733214 17733319 -137896801 + MTC LTR MaLR 1 106 -315 3 720 518 216 80 0 chr4 17733638 17733763 -137896357 - Lx9 LINE L1 -460 7184 7050 3 720 219 182 68 0 chr4 17733859 17733903 -137896217 + polypurine Low_complexity Low_complexity 3 49 0 3 720 33 56 0 0 chr4 17734304 17734358 -137895762 + AT_rich Low_complexity Low_complexity 1 54 0 3 720 2940 228 45 10 chr4 17734715 17735339 -137894781 - Lx5 LINE L1 -3 7047 6402 3 720 4162 165 49 44 chr4 17735344 17736176 -137893944 + Lx5 LINE L1 5587 6401 -649 3 720 27 0 0 0 chr4 17736812 17736839 -137893281 + AT_rich Low_complexity Low_complexity 1 27 0 3 720 710 293 74 22 chr4 17737156 17737425 -137892695 + Lx8 LINE L1 6272 6554 -919 3 720 1254 266 175 26 chr4 17737430 17738037 -137892083 + Lx8 LINE L1 6768 7464 -9 3 720 261 0 0 0 chr4 17738041 17738070 -137892050 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 720 1036 110 7 0 chr4 17738226 17738372 -137891748 + B1_Mus1 SINE Alu 1 147 -1 3 720 793 314 79 22 chr4 17739052 17739368 -137890752 - LTR40a LTR ERVL -179 340 7 3 720 365 371 25 62 chr4 17739476 17739637 -137890483 - ID_B1 SINE B4 -68 156 2 3 720 3726 168 4 10 chr4 17739809 17740502 -137889618 + Lx2 LINE L1 6307 6995 -2 3 720 7974 32 11 0 chr4 17740586 17741505 -137888615 + RLTR13B3 LTR ERVK 1 929 0 3 720 379 382 6 26 chr4 17741637 17741793 -137888327 + RSINE1 SINE B4 13 165 0 3 720 656 173 72 0 chr4 17742145 17742284 -137887836 + URR1A DNA MER1_type 77 225 -1 3 720 30256 93 13 16 chr4 17742424 17747552 -137882568 + L1Md_F2 LINE L1 388 5504 -379 3 720 6098 106 7 6 chr4 17747552 17748442 -137881678 + L1Md_F2 LINE L1 5680 6570 -12 3 720 183 188 0 0 chr4 17748631 17748679 -137881441 + A-rich Low_complexity Low_complexity 1 48 0 3 720 309 398 13 13 chr4 17749150 17749384 -137880736 - Lx8 LINE L1 -362 7111 6878 3 720 220 70 47 0 chr4 17749406 17749449 -137880671 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 3 720 438 36 0 0 chr4 17749491 17749547 -137880573 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 720 488 168 0 10 chr4 17749553 17749655 -137880465 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 720 212 333 16 70 chr4 17749953 17750082 -137880038 + L2c LINE L2 3261 3382 -5 3 720 22 35 0 0 chr4 17750630 17750659 -137879461 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 231 36 0 0 chr4 17750793 17750821 -137879299 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3 720 556 349 10 25 chr4 17750827 17751027 -137879093 - B3 SINE B2 -19 197 1 3 720 207 88 0 0 chr4 17751417 17751451 -137878669 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 720 8942 115 8 4 chr4 17751723 17753993 -137876127 + Lx3A LINE L1 4701 6974 -7 3 720 1897 211 18 30 chr4 17754017 17754072 -137876048 + Lx5 LINE L1 5428 5477 -400 3 720 2490 128 47 38 chr4 17754072 17754543 -137875577 + IAPLTR2_Mm LTR ERVK 1 475 0 3 720 1897 213 37 24 chr4 17754543 17755093 -137875027 + Lx5 LINE L1 5478 6059 -991 3 720 2565 187 138 46 chr4 17755939 17756571 -137873549 - RMER13A LTR ERVK 0 860 171 3 720 585 280 71 24 chr4 17756600 17756812 -137873308 - RMER13B LTR ERVK -686 222 1 3 720 202 257 27 0 chr4 17757110 17757184 -137872936 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 720 24 67 0 0 chr4 17757290 17757335 -137872785 + AT_rich Low_complexity Low_complexity 1 45 0 3 720 324 0 0 0 chr4 17757342 17757378 -137872742 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 720 260 254 44 15 chr4 17757435 17757503 -137872617 - B3A SINE B2 -127 71 2 3 720 338 396 66 28 chr4 17757738 17758024 -137872096 + MLT1A0 LTR MaLR 20 316 -49 3 720 653 125 0 0 chr4 17758038 17758144 -137871976 + L1_Mus2 LINE L1 6441 6546 -20 3 720 1079 75 0 26 chr4 17758144 17758295 -137871825 + B1_Mm SINE Alu 1 147 0 3 720 299 226 0 16 chr4 17758341 17758404 -137871716 + MLT1A0 LTR MaLR 302 363 -11 3 720 28727 84 3 87 chr4 17758561 17760974 -137869146 + L1Md_F2 LINE L1 978 3485 -2401 3 720 249 33 0 0 chr4 17760974 17761004 -137869116 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 720 28727 84 3 92 chr4 17761004 17762611 -137867509 + L1Md_F2 LINE L1 3486 4690 -1196 3 720 1713 64 0 17 chr4 17762611 17762849 -137867271 + L1Md_F3 LINE L1 6351 6584 0 3 720 28727 84 3 92 chr4 17762849 17763756 -137866364 + L1Md_F2 LINE L1 4691 5573 -313 3 720 7642 72 1 1 chr4 17763794 17764790 -137865330 + L1Md_F2 LINE L1 5590 6585 0 3 720 522 0 0 0 chr4 17765290 17765348 -137864772 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 720 353 319 33 0 chr4 17765361 17765452 -137864668 - RSINE1 SINE B4 -7 158 65 3 720 694 273 75 36 chr4 17766641 17766861 -137863259 - RMER13A LTR ERVK -136 380 97 3 720 281 135 19 0 chr4 17769157 17769209 -137860911 + CT-rich Low_complexity Low_complexity 1 53 0 3 720 315 0 0 0 chr4 17769209 17769244 -137860876 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 720 713 265 91 22 chr4 17769628 17769859 -137860261 - B4A SINE B4 0 292 46 3 720 27 29 0 0 chr4 17770340 17770374 -137859746 + AT_rich Low_complexity Low_complexity 1 34 0 3 720 30854 86 6 1 chr4 17770376 17775552 -137854568 + L1Md_F2 LINE L1 387 5586 -297 3 720 7913 55 3 3 chr4 17775553 17776546 -137853574 + L1Md_F2 LINE L1 5588 6580 -2 3 720 921 57 0 0 chr4 17778666 17778790 -137851330 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 720 566 140 9 0 chr4 17780244 17780358 -137849762 + (TG)n Simple_repeat Simple_repeat 1 115 0 3 720 690 44 0 0 chr4 17783106 17783196 -137846924 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 720 325 16 0 75 chr4 17783449 17783516 -137846604 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 3 720 189 196 0 0 chr4 17785793 17785839 -137844281 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 720 412 0 69 0 chr4 17786291 17786349 -137843771 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 3 720 502 260 31 8 chr4 17786564 17786692 -137843428 + MTE2b LTR MaLR 1 131 -248 3 720 295 309 96 0 chr4 17786737 17786831 -137843289 + MTE2b LTR MaLR 262 364 -15 3 720 180 0 0 0 chr4 17786833 17786853 -137843267 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 720 794 171 0 6 chr4 17787377 17787554 -137842566 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 3 720 314 45 23 0 chr4 17787561 17787605 -137842515 + (TATG)n Simple_repeat Simple_repeat 3 47 0 3 720 7456 92 21 21 chr4 17789711 17790825 -137839295 - Lx3_Mus LINE L1 -8 7001 5888 3 720 25 0 0 0 chr4 17791313 17791338 -137838782 + AT_rich Low_complexity Low_complexity 1 25 0 3 720 576 0 0 0 chr4 17791909 17791973 -137838147 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 720 3713 47 106 8 chr4 17792627 17793125 -137836995 - L1Md_F2 LINE L1 0 6582 6036 3 720 1410 211 64 84 chr4 17793235 17793597 -137836523 - ORR1B1 LTR MaLR -8 386 1 3 720 395 282 82 50 chr4 17793723 17793943 -137836177 + L1MEc LINE L1 501 727 -5673 3 720 397 147 164 9 chr4 17794161 17794271 -137835849 + Lx2 LINE L1 6869 6995 -2 3 720 484 286 63 25 chr4 17794315 17794473 -137835647 + B4A SINE B4 127 290 -2 3 720 416 292 123 32 chr4 17795323 17795663 -137834457 - Charlie1b DNA MER1_type -108 415 45 3 720 358 339 30 82 chr4 17795722 17796027 -137834093 - Lx9 LINE L1 -188 7456 7168 3 720 28803 119 8 36 chr4 17796861 17802919 -137827201 - L1_Mus1 LINE L1 0 6567 708 3 720 248 265 65 47 chr4 17802902 17803009 -137827111 - L1_Mus1 LINE L1 -6242 374 266 3 720 276 307 34 84 chr4 17803015 17803460 -137826660 - L1VL1 LINE L1 -5926 496 77 3 720 2213 138 58 3 chr4 17804948 17805326 -137824794 + Lx LINE L1 6250 6648 -6 3 720 366 304 88 0 chr4 17806702 17806804 -137823316 + RSINE1 SINE B4 2 112 -53 3 720 477 0 0 0 chr4 17809183 17809236 -137820884 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 720 2350 276 126 14 chr4 17809242 17810147 -137819973 - Lx9 LINE L1 -172 7472 6467 3 720 180 0 0 0 chr4 17810438 17810458 -137819662 + (T)n Simple_repeat Simple_repeat 1 20 0 3 720 585 42 0 0 chr4 17812023 17812095 -137818025 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 3 720 1248 279 84 56 chr4 17814165 17814714 -137815406 - RMER15 LTR ERVL -72 503 1 3 720 985 131 0 7 chr4 17815476 17815622 -137814498 - B1_Mus2 SINE Alu 0 147 3 3 720 1757 120 21 17 chr4 17815643 17815931 -137814189 - Lx2 LINE L1 -5 6992 6704 3 720 21 36 0 0 chr4 17816375 17816403 -137813717 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 405 0 0 0 chr4 17816432 17816477 -137813643 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 720 239 364 47 61 chr4 17816709 17817025 -137813095 - L2c LINE L2 -67 3320 3010 3 720 228 320 0 115 chr4 17817320 17817433 -137812687 - RMER13A LTR ERVK -575 285 186 3 720 227 241 35 35 chr4 17817999 17818115 -137812005 - Lx9 LINE L1 -145 7499 7384 3 720 543 272 70 19 chr4 17818459 17818778 -137811342 - Lx8 LINE L1 -1547 5926 5589 3 720 931 323 55 13 chr4 17819028 17819335 -137810785 - MTE2b LTR MaLR -4 375 56 3 720 396 103 0 0 chr4 17819544 17819602 -137810518 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 720 429 20 0 0 chr4 17819785 17819835 -137810285 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 720 533 270 214 0 chr4 17820492 17820670 -137809450 - B3 SINE B2 0 216 1 3 720 249 33 0 0 chr4 17821244 17821274 -137808846 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 720 664 92 9 18 chr4 17821412 17821523 -137808597 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 3 720 23 33 0 0 chr4 17822308 17822338 -137807782 + AT_rich Low_complexity Low_complexity 1 30 0 4 720 546 54 0 0 chr4 17822618 17822692 -137807428 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 720 21 0 0 0 chr4 17822692 17822713 -137807407 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 6519 133 38 8 chr4 17822713 17823805 -137806315 - Lx3A LINE L1 -6 6975 5852 4 720 1446 89 9 13 chr4 17824423 17824650 -137805470 - L1Md_F2 LINE L1 0 6582 6357 4 720 2182 56 0 0 chr4 17824650 17824917 -137805203 + L1Md_F2 LINE L1 6071 6337 -245 4 721 198 98 39 19 chr4 17825951 17826003 -137804117 + T-rich Low_complexity Low_complexity 6 58 0 4 721 386 39 19 0 chr4 17826393 17826445 -137803675 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 4 721 249 232 0 18 chr4 17826540 17826597 -137803523 - RSINE1 SINE B4 -99 66 11 4 721 33953 41 1 0 chr4 17828020 17832217 -137797903 + L1Md_T LINE L1 1387 5586 -297 4 721 8347 34 1 0 chr4 17832217 17833212 -137796908 + L1Md_T LINE L1 5587 6582 0 4 721 928 246 161 22 chr4 17833972 17834416 -137795704 + RLTR20B1 LTR ERVK 9 541 0 4 721 437 0 19 0 chr4 17835294 17835347 -137794773 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 721 189 147 0 0 chr4 17835906 17835940 -137794180 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 4 721 1993 288 128 29 chr4 17836155 17837687 -137792433 + Lx7 LINE L1 5504 7167 -529 4 721 591 15 0 0 chr4 17837693 17837761 -137792359 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 721 414 0 0 0 chr4 17837764 17837810 -137792310 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 721 386 254 52 30 chr4 17838873 17839007 -137791113 - Lx7 LINE L1 -1 7695 7559 4 721 392 343 42 42 chr4 17839232 17839494 -137790626 + MLT1B LTR MaLR 2 263 -127 4 721 225 0 0 0 chr4 17839583 17839608 -137790512 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 721 1304 325 95 8 chr4 17840845 17841453 -137788667 + Tigger7 DNA MER2_type 15 675 -1816 4 721 1432 308 117 26 chr4 17841486 17842172 -137787948 + Tigger7 DNA MER2_type 1091 1838 -653 4 721 7396 84 7 4 chr4 17842296 17843301 -137786819 - L1_Mus3 LINE L1 -3 6635 5628 4 721 336 333 94 62 chr4 17843536 17843728 -137786392 + Tigger7 DNA MER2_type 1857 2054 -437 4 721 306 270 221 9 chr4 17843777 17843994 -137786126 + Tigger7 DNA MER2_type 2156 2418 -73 4 721 408 71 0 0 chr4 17844061 17844117 -137786003 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 721 319 115 19 0 chr4 17844178 17844230 -137785890 - HAL1-3A_ME LINE L1 -831 2027 1975 4 721 194 250 14 0 chr4 17844236 17844308 -137785812 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 721 1663 192 70 74 chr4 17844822 17845239 -137784881 + Lx5 LINE L1 6184 6598 -452 4 721 715 239 33 28 chr4 17845234 17845445 -137784675 + Lx4B LINE L1 6843 7054 -4 4 721 214 217 24 12 chr4 17847048 17847132 -137782988 + CT-rich Low_complexity Low_complexity 2 86 0 4 721 1222 118 21 0 chr4 17848827 17849014 -137781106 - B2_Mm2 SINE B2 -4 191 1 4 721 777 279 19 53 chr4 17849113 17849321 -137780799 - B3 SINE B2 -11 205 5 4 721 645 158 7 14 chr4 17849697 17849838 -137780282 + (TG)n Simple_repeat Simple_repeat 1 140 0 4 721 393 75 0 0 chr4 17849837 17849890 -137780230 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 721 266 294 136 62 chr4 17850358 17850630 -137779490 + B4 SINE B4 1 292 0 4 721 24 32 0 0 chr4 17850901 17850932 -137779188 + AT_rich Low_complexity Low_complexity 1 31 0 4 721 562 275 84 0 chr4 17851164 17851306 -137778814 + B3 SINE B2 3 156 -60 4 721 243 0 0 0 chr4 17851312 17851339 -137778781 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 721 21 82 0 0 chr4 17851356 17851405 -137778715 + AT_rich Low_complexity Low_complexity 1 49 0 4 721 7061 52 13 6 chr4 17852257 17853153 -137776967 - L1Md_F2 LINE L1 0 6582 5680 4 721 233 318 151 50 chr4 17854127 17854306 -137775814 + B3A SINE B2 1 197 -1 4 721 404 319 14 36 chr4 17855434 17855574 -137774546 + B4A SINE B4 79 215 -77 4 721 749 315 70 34 chr4 17855696 17856166 -137773954 - L1MC3 LINE L1 -150 7635 7149 4 721 23 33 0 0 chr4 17856679 17856709 -137773411 + AT_rich Low_complexity Low_complexity 1 30 0 4 721 1807 291 128 11 chr4 17856764 17857407 -137772713 - Lx6 LINE L1 0 7460 6743 4 721 856 64 0 0 chr4 17857660 17857770 -137772350 + B1_Mm SINE Alu 31 140 -7 4 721 21 0 0 0 chr4 17858610 17858631 -137771489 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 279 299 101 17 chr4 17859902 17860021 -137770099 + ID_B1 SINE B4 84 212 -12 4 721 183 80 0 0 chr4 17860025 17860050 -137770070 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 721 3280 40 2 10 chr4 17860069 17860468 -137769652 + MTA_Mm LTR MaLR 1 396 0 4 721 9077 36 4 1 chr4 17860468 17861563 -137768557 + MTA_Mm-int LTR MaLR 1 1098 0 4 721 3018 37 53 11 chr4 17861564 17861943 -137768177 + MTA_Mm LTR MaLR 2 396 0 4 721 765 144 0 0 chr4 17861976 17862108 -137768012 + (TA)n Simple_repeat Simple_repeat 2 133 0 4 721 325 275 0 0 chr4 17862322 17862413 -137767707 + CT-rich Low_complexity Low_complexity 2 92 0 4 721 207 204 0 0 chr4 17862431 17862485 -137767635 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 721 6802 85 32 14 chr4 17863299 17864615 -137765505 - L1Md_F2 LINE L1 -3 6579 5251 4 721 342 0 0 0 chr4 17864615 17864653 -137765467 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 721 4810 89 29 0 chr4 17864653 17864687 -137765433 - L1Md_F2 LINE L1 -633 5250 5199 4 721 7744 78 29 0 chr4 17864678 17865734 -137764386 + L1Md_F2 LINE L1 4130 5216 -667 4 721 865 321 70 17 chr4 17866539 17866897 -137763223 + MTE2a LTR MaLR 1 377 -2 4 721 612 341 139 14 chr4 17867752 17868046 -137762074 + MTD LTR MaLR 1 331 -88 4 721 1048 95 7 0 chr4 17868108 17868255 -137761865 + B1_Mus1 SINE Alu 1 148 0 4 721 198 103 0 0 chr4 17868255 17868284 -137761836 + (A)n Simple_repeat Simple_repeat 1 29 0 4 721 315 0 0 0 chr4 17868655 17868690 -137761430 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 721 285 392 19 13 chr4 17868723 17868878 -137761242 - RSINE1 SINE B4 -1 164 9 4 721 7564 68 1 5 chr4 17868950 17870577 -137759543 - L1Md_F2 LINE L1 0 6582 4961 4 721 308 152 0 0 chr4 17870561 17870620 -137759500 + L1_Mm LINE L1 3198 3256 -2627 4 721 619 324 71 37 chr4 17870837 17871132 -137758988 - MLT1A0 LTR MaLR -60 305 1 4 721 43 20 0 0 chr4 17872908 17872958 -137757162 + AT_rich Low_complexity Low_complexity 1 50 0 4 721 189 0 0 0 chr4 17873065 17873086 -137757034 + (T)n Simple_repeat Simple_repeat 1 21 0 4 721 670 130 26 33 chr4 17873086 17873237 -137756883 - Lx3A LINE L1 0 6981 6832 4 721 396 0 0 0 chr4 17873657 17873701 -137756419 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 721 1109 288 43 29 chr4 17875812 17876324 -137753796 + L1MA7 LINE L1 4820 5338 -805 4 721 751 271 66 70 chr4 17876403 17876454 -137753666 + L1MA7 LINE L1 5337 5387 -904 4 721 240 59 0 0 chr4 17876454 17876488 -137753632 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 4 721 751 271 66 70 chr4 17876488 17876899 -137753221 + L1MA7 LINE L1 5388 5796 -495 4 721 378 0 0 0 chr4 17876899 17876941 -137753179 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 721 751 271 66 70 chr4 17876941 17877049 -137753071 + L1MA7 LINE L1 5797 5905 -386 4 721 237 331 23 23 chr4 17877116 17877289 -137752831 + L1MA7 LINE L1 6065 6237 -54 4 721 22 35 0 0 chr4 17877575 17877604 -137752516 + AT_rich Low_complexity Low_complexity 1 29 0 4 721 224 260 0 0 chr4 17877931 17877981 -137752139 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 721 1256 206 74 83 chr4 17878069 17878396 -137751724 - ORR1B1 LTR MaLR -5 389 2 4 721 584 27 14 0 chr4 17878814 17878888 -137751232 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 4 721 682 145 69 0 chr4 17879096 17879227 -137750893 + B2_Mm2 SINE B2 56 195 0 4 721 2315 139 43 36 chr4 17879228 17879669 -137750451 + Lx LINE L1 6211 6654 0 4 721 31 82 0 0 chr4 17879971 17880044 -137750076 + AT_rich Low_complexity Low_complexity 1 73 0 4 721 989 200 246 18 chr4 17880348 17880426 -137749694 - RMER4A LTR ERVK 0 466 388 4 721 198 0 0 0 chr4 17880426 17880448 -137749672 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 721 989 200 246 18 chr4 17880448 17880649 -137749471 - RMER4A LTR ERVK -79 387 124 4 721 21 57 0 0 chr4 17881650 17881685 -137748435 + AT_rich Low_complexity Low_complexity 1 35 0 4 721 3442 142 47 0 chr4 17882428 17882977 -137747143 - Lx3C LINE L1 -157 6819 6245 4 721 189 256 0 0 chr4 17883186 17883268 -137746852 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 721 312 27 0 0 chr4 17884893 17884930 -137745190 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 721 297 172 0 17 chr4 17885224 17885283 -137744837 + ORR1D1 LTR MaLR 313 370 -4 4 721 761 325 48 42 chr4 17886038 17886724 -137743396 + L1M2 LINE L1 4665 5327 -553 4 721 567 275 75 67 chr4 17886747 17887000 -137743120 - ORR1C2 LTR MaLR -2 382 128 4 721 5017 165 25 25 chr4 17887001 17887377 -137742743 + L1_Mur2 LINE L1 3090 3475 -2402 4 721 703 32 11 11 chr4 17887377 17887472 -137742648 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 4 721 5017 165 25 25 chr4 17887472 17888148 -137741972 + L1_Mur2 LINE L1 3476 4141 -1736 4 721 227 310 28 14 chr4 17888152 17888224 -137741896 + Lx9 LINE L1 5655 5727 -1917 4 721 24 85 0 0 chr4 17888678 17888737 -137741383 + AT_rich Low_complexity Low_complexity 1 59 0 4 721 3593 135 3 8 chr4 17889217 17889821 -137740299 - L1_Mur1 LINE L1 -546 5340 4740 4 721 13350 59 1 0 chr4 17889816 17892025 -137738095 + L1Md_F2 LINE L1 4180 6390 -192 4 721 3744 43 32 0 chr4 17892025 17892489 -137737631 + L1Md_A LINE L1 6103 6581 -1 4 721 992 198 5 28 chr4 17892495 17892708 -137737412 - L1_Mur2 LINE L1 -984 4893 4686 4 721 330 229 122 0 chr4 17892691 17892822 -137737298 + Lx3C LINE L1 6828 6974 -2 4 721 23 33 0 0 chr4 17893310 17893340 -137736780 + AT_rich Low_complexity Low_complexity 1 30 0 4 721 266 353 57 53 chr4 17893720 17894001 -137736119 + B4A SINE B4 1 282 -10 4 721 315 324 0 43 chr4 17894048 17894164 -137735956 - RMER12 LTR ERVK -466 856 746 4 721 183 129 0 0 chr4 17894510 17894541 -137735579 + (T)n Simple_repeat Simple_repeat 1 31 0 4 721 497 300 135 16 chr4 17895365 17895723 -137734397 - L1MA7 LINE L1 -281 6010 5604 4 721 336 260 31 10 chr4 17895895 17895992 -137734128 - L1MA7 LINE L1 -1313 4830 4732 4 721 2034 199 16 91 chr4 17896015 17896630 -137733490 - L1_Mur3 LINE L1 -2691 3189 2621 4 721 3446 265 72 26 chr4 17896637 17896980 -137733140 + Lx6 LINE L1 6060 6401 -1059 4 721 2082 116 25 0 chr4 17896980 17897307 -137732813 + Lx LINE L1 6320 6654 0 4 721 3446 265 72 26 chr4 17897307 17898008 -137732112 + Lx6 LINE L1 6402 7152 -308 4 721 216 0 0 0 chr4 17898009 17898033 -137732087 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 721 191 304 0 0 chr4 17898518 17898564 -137731556 + L2 LINE L2 2866 2911 -508 5 721 251 54 27 0 chr4 17898813 17898850 -137731270 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 721 715 183 0 0 chr4 17898887 17899007 -137731113 + B2_Mm2 SINE B2 4 123 -72 5 721 335 291 8 0 chr4 17899016 17899150 -137730970 + C-rich Low_complexity Low_complexity 4 138 0 5 721 771 92 0 0 chr4 17899150 17899259 -137730861 + (TTTTC)n Simple_repeat Simple_repeat 3 111 0 5 721 1241 105 225 0 chr4 17899259 17899468 -137730652 - L1_Mus4 LINE L1 -263 6373 6118 5 721 1857 145 0 20 chr4 17899476 17899771 -137730349 + RLTR27 LTR ERVK 21 309 0 5 721 1207 95 0 0 chr4 17899771 17899940 -137730180 - L1_Mus4 LINE L1 -512 6124 5956 5 721 414 240 86 52 chr4 17900427 17900660 -137729460 + L1MA8 LINE L1 6008 6248 -43 5 721 1863 260 45 72 chr4 17902974 17903080 -137727040 - RLTR20A LTR ERVK 0 541 442 5 721 252 0 0 0 chr4 17903080 17903108 -137727012 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 721 432 0 0 0 chr4 17903114 17903162 -137726958 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 721 1863 260 45 72 chr4 17903162 17903604 -137726516 - RLTR20A LTR ERVK -100 441 1 5 721 183 42 0 0 chr4 17904350 17904374 -137725746 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 721 197 345 42 28 chr4 17904588 17904697 -137725423 + MIRb SINE MIR 78 189 -79 5 721 468 0 0 0 chr4 17904697 17904749 -137725371 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 721 197 345 42 28 chr4 17904749 17904782 -137725338 + MIRb SINE MIR 190 222 -46 5 721 397 286 184 11 chr4 17905958 17906241 -137723879 + L1MB3 LINE L1 5847 6178 -5 5 721 239 271 0 0 chr4 17906534 17906593 -137723527 - Charlie7 DNA MER1_type -998 1614 1556 5 721 1923 146 25 3 chr4 17906595 17906911 -137723209 + ORR1A2 LTR MaLR 5 327 0 5 721 2473 186 69 24 chr4 17906911 17907447 -137722673 + ORR1A2-int LTR MaLR 1 560 -1403 5 721 573 232 36 101 chr4 17907440 17907608 -137722512 + MT2B LTR ERVL 157 313 -288 5 721 1230 171 15 0 chr4 17907587 17907792 -137722328 + ORR1A2 LTR MaLR 120 327 0 5 721 3002 164 22 17 chr4 17907860 17908393 -137721727 + RMER2 LTR ERV1 1 536 -31 5 721 323 331 89 0 chr4 17908720 17908844 -137721276 + MTD LTR MaLR 140 274 -145 5 721 925 319 30 3 chr4 17909928 17910230 -137719890 - MTD LTR MaLR -108 311 2 5 721 214 235 20 0 chr4 17910246 17910297 -137719823 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 721 633 209 62 31 chr4 17911416 17911609 -137718511 - RMER10A LTR ERVL 0 442 244 5 721 228 246 0 0 chr4 17912415 17912484 -137717636 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 721 261 0 0 0 chr4 17913868 17913897 -137716223 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 721 216 182 0 0 chr4 17913945 17913989 -137716131 + T-rich Low_complexity Low_complexity 1 44 0 5 721 1055 90 7 0 chr4 17915115 17915260 -137714860 - B1_Mus2 SINE Alu 0 147 2 5 721 570 80 0 93 chr4 17915830 17915927 -137714193 - B1_Mm SINE Alu 0 147 60 5 721 1027 103 7 0 chr4 17915966 17916112 -137714008 - B1_Mus2 SINE Alu 0 147 1 5 721 549 44 0 0 chr4 17916237 17916305 -137713815 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 721 433 268 73 8 chr4 17917173 17917297 -137712823 + B3A SINE B2 1 132 -66 5 721 1083 95 0 0 chr4 17917454 17917601 -137712519 + B1_Mus2 SINE Alu 1 147 0 5 721 33 25 0 0 chr4 17917964 17918004 -137712116 + AT_rich Low_complexity Low_complexity 1 40 0 5 721 234 360 51 14 chr4 17918218 17918356 -137711764 + B1F SINE Alu 5 147 -2 5 721 1127 82 0 13 chr4 17918420 17918569 -137711551 + B1_Mus1 SINE Alu 2 148 0 5 721 226 109 18 35 chr4 17918570 17918627 -137711493 + A-rich Low_complexity Low_complexity 3 58 0 5 721 1109 269 68 3 chr4 17918641 17918992 -137711128 - ORR1D1 LTR MaLR 0 374 1 5 721 323 42 42 0 chr4 17919484 17919532 -137710588 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 5 721 288 0 0 0 chr4 17919684 17919716 -137710404 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 721 414 0 0 0 chr4 17921751 17921797 -137708323 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 721 666 325 41 0 chr4 17922370 17922567 -137707553 + B3 SINE B2 6 210 -6 5 721 661 200 35 23 chr4 17922891 17923078 -137707042 - B3 SINE B2 -5 190 1 5 721 201 74 0 0 chr4 17923306 17923333 -137706787 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 5 721 2880 52 0 0 chr4 17923829 17924175 -137705945 - ORR1A1 LTR MaLR 0 346 1 5 721 13268 70 10 2 chr4 17924175 17925952 -137704168 - ORR1A1-int LTR MaLR 0 1792 1 5 721 2848 55 0 0 chr4 17925952 17926298 -137703822 - ORR1A1 LTR MaLR 0 346 1 5 721 209 132 26 0 chr4 17926326 17926364 -137703756 + T-rich Low_complexity Low_complexity 3 41 0 5 721 306 0 0 0 chr4 17926643 17926677 -137703443 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 721 644 304 61 15 chr4 17927696 17928070 -137702050 - L1MC2 LINE L1 -477 6042 5657 5 721 1550 239 57 52 chr4 17928088 17928454 -137701666 - MTC LTR MaLR 0 421 41 5 721 3436 127 43 14 chr4 17928454 17929031 -137701089 - Lx2 LINE L1 0 6997 6404 5 721 1550 239 57 52 chr4 17929031 17929083 -137701037 - MTC LTR MaLR -381 40 1 5 721 467 318 23 0 chr4 17929467 17929596 -137700524 - ID_B1 SINE B4 -89 135 4 5 721 230 237 98 49 chr4 17929655 17929757 -137700363 - L1MC2 LINE L1 -1194 5127 5021 5 721 230 0 0 32 chr4 17929955 17929986 -137700134 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 721 1237 27 0 0 chr4 17929991 17930138 -137699982 - B1_Mus2 SINE Alu 0 147 1 5 721 544 221 7 7 chr4 17930286 17930441 -137699679 + (TA)n Simple_repeat Simple_repeat 1 155 0 5 721 538 213 132 5 chr4 17930532 17930721 -137699399 - L1MC2 LINE L1 -4704 1804 1592 5 721 203 146 24 0 chr4 17931169 17931210 -137698910 + CT-rich Low_complexity Low_complexity 2 43 0 5 721 276 100 0 0 chr4 17931212 17931252 -137698868 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 721 1072 163 5 11 chr4 17932222 17932408 -137697712 - Lx2 LINE L1 -594 6403 6219 5 721 399 184 0 0 chr4 17932408 17932484 -137697636 - Lx2 LINE L1 -934 6063 5988 5 721 1462 157 18 18 chr4 17932484 17932756 -137697364 + Lx2 LINE L1 6723 6994 -3 5 721 22 0 0 0 chr4 17932757 17932779 -137697341 + AT_rich Low_complexity Low_complexity 1 22 0 5 721 21 0 0 0 chr4 17932917 17932938 -137697182 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 184 336 98 18 chr4 17933300 17933412 -137696708 + L2 LINE L2 2740 2860 -559 5 721 274 185 62 0 chr4 17934495 17934576 -137695544 + A-rich Low_complexity Low_complexity 5 90 0 5 721 1356 224 225 19 chr4 17934728 17935297 -137694823 - RMER6C LTR ERVK -4 686 1 5 721 225 325 0 13 chr4 17935460 17935538 -137694582 + CT-rich Low_complexity Low_complexity 2 78 0 5 721 681 66 0 0 chr4 17935550 17935641 -137694479 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 721 300 216 113 38 chr4 17936371 17936477 -137693643 - RLTR19-int LTR ERVK -4547 1590 1477 5 721 226 336 8 16 chr4 17936671 17936792 -137693328 + (CCA)n Simple_repeat Simple_repeat 1 120 0 5 721 25 31 0 0 chr4 17937769 17937801 -137692319 + AT_rich Low_complexity Low_complexity 1 32 0 5 721 258 32 0 0 chr4 17938143 17938174 -137691946 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 721 282 56 0 0 chr4 17939748 17939784 -137690336 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5 721 651 229 170 9 chr4 17939785 17939997 -137690123 - Lx4B LINE L1 -5 7053 6808 5 721 21 0 0 0 chr4 17942230 17942251 -137687869 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 979 165 0 17 chr4 17943210 17943389 -137686731 - B2_Mm2 SINE B2 -18 177 2 5 721 633 27 0 0 chr4 17946122 17946197 -137683923 + (GAA)n Simple_repeat Simple_repeat 1 75 0 5 721 393 22 0 0 chr4 17946662 17946708 -137683412 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 721 22 35 0 0 chr4 17947760 17947789 -137682331 + AT_rich Low_complexity Low_complexity 1 29 0 5 721 438 161 0 0 chr4 17947908 17948001 -137682119 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 721 35476 46 1 3 chr4 17948738 17954188 -137675932 + L1Md_T LINE L1 59 5589 -297 5 721 8527 28 0 0 chr4 17954189 17955184 -137674936 + L1Md_T LINE L1 5591 6585 0 5 721 1132 235 114 24 chr4 17955757 17955965 -137674155 + ORR1D1 LTR MaLR 1 243 -131 5 721 414 0 0 0 chr4 17955965 17956011 -137674109 + (CCTG)n Simple_repeat Simple_repeat 1 46 0 5 721 1132 235 114 24 chr4 17956011 17956134 -137673986 + ORR1D1 LTR MaLR 244 362 -12 5 90 1139 321 57 85 chr4 17956246 17957154 -137672966 - Lx8 LINE L1 -28 7445 6563 5 722 25 0 0 0 chr4 17958060 17958085 -137672035 + AT_rich Low_complexity Low_complexity 1 25 0 5 722 651 309 72 20 chr4 17958257 17958677 -137671443 - Lx8 LINE L1 -1555 5918 5462 5 722 30 27 0 0 chr4 17958988 17959025 -137671095 + AT_rich Low_complexity Low_complexity 1 37 0 5 722 4859 263 68 16 chr4 17959029 17959599 -137670521 - Lx7 LINE L1 -463 7233 6590 5 722 948 108 0 0 chr4 17959599 17959756 -137670364 + (CA)n Simple_repeat Simple_repeat 2 158 0 5 722 4859 263 68 16 chr4 17959756 17960644 -137669476 - Lx7 LINE L1 -1107 6589 5701 5 722 440 348 77 35 chr4 17960707 17961109 -137669011 + Lx8 LINE L1 7047 7465 -8 5 722 532 316 49 56 chr4 17961166 17961454 -137668666 + B4 SINE B4 1 286 -6 5 722 224 390 0 62 chr4 17961616 17961728 -137668392 + PB1D10 SINE Alu 13 117 0 5 722 222 150 0 0 chr4 17962035 17962075 -137668045 + (TTC)n Simple_repeat Simple_repeat 3 42 0 5 722 4386 120 22 0 chr4 17962082 17962749 -137667371 - Lx3A LINE L1 -2 6979 6298 5 722 29 47 0 0 chr4 17963166 17963209 -137666911 + AT_rich Low_complexity Low_complexity 1 43 0 5 722 23 68 0 0 chr4 17963451 17963495 -137666625 + AT_rich Low_complexity Low_complexity 1 44 0 5 722 274 316 0 0 chr4 17963692 17963771 -137666349 + Lx9 LINE L1 6776 6854 -790 5 722 447 68 0 0 chr4 17964012 17964071 -137666049 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 5 722 189 357 78 16 chr4 17965665 17965793 -137664327 - MIRm SINE MIR -103 173 38 5 722 509 0 16 0 chr4 17966397 17966458 -137663662 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 722 219 183 14 40 chr4 17966822 17966896 -137663224 + GA-rich Low_complexity Low_complexity 1 72 0 5 722 252 132 35 70 chr4 17966918 17966975 -137663145 + PB1D10 SINE Alu 62 116 -1 5 722 391 63 16 16 chr4 17967162 17967226 -137662894 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 5 722 5242 176 57 55 chr4 17967226 17968759 -137661361 - Lx3A LINE L1 0 6981 5463 5 722 7158 75 8 14 chr4 17969659 17971298 -137658822 - L1Md_F2 LINE L1 0 6582 4950 6 722 7200 77 0 27 chr4 17971295 17971410 -137658710 + L1_Mm LINE L1 3771 3859 -2024 6 722 5343 43 0 5 chr4 17971410 17972063 -137658057 + L1Md_T LINE L1 5933 6582 0 6 722 7200 77 0 27 chr4 17972063 17972977 -137657143 + L1_Mm LINE L1 3860 4772 -1111 6 722 1106 233 31 8 chr4 17972978 17973296 -137656824 - RMER19C LTR ERVK -6 605 326 6 722 351 113 0 0 chr4 17974791 17974844 -137655276 + (CATTG)n Simple_repeat Simple_repeat 2 54 0 6 722 34 42 0 0 chr4 17975719 17975767 -137654353 + AT_rich Low_complexity Low_complexity 1 48 0 6 722 22 0 0 0 chr4 17975794 17975816 -137654304 + AT_rich Low_complexity Low_complexity 1 22 0 6 722 891 319 173 17 chr4 17976771 17977246 -137652874 - RMER15 LTR ERVL 0 575 27 6 722 202 340 102 58 chr4 17977331 17977556 -137652564 + MIR SINE MIR 14 248 -14 6 722 254 288 74 12 chr4 17978071 17978152 -137651968 + PB1D7 SINE Alu 27 112 -8 6 722 21 0 0 0 chr4 17978525 17978546 -137651574 + AT_rich Low_complexity Low_complexity 1 21 0 6 722 1336 246 130 105 chr4 17979414 17980023 -137650097 - RMER20B LTR ERVK 0 627 4 6 722 231 114 0 0 chr4 17982159 17982194 -137647926 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 722 189 0 0 0 chr4 17982276 17982297 -137647823 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 722 272 137 0 19 chr4 17982431 17982483 -137647637 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 722 447 19 0 0 chr4 17982529 17982581 -137647539 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 722 270 0 0 0 chr4 17982709 17982739 -137647381 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 722 1059 67 8 0 chr4 17982739 17982873 -137647247 - B1_Mm SINE Alu -8 139 5 6 722 768 76 0 30 chr4 17983049 17983184 -137646936 - L1Md_F3 LINE L1 0 6584 6454 6 722 300 53 0 0 chr4 17984003 17984041 -137646079 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 722 591 266 79 6 chr4 17984796 17984974 -137645146 - Lx8 LINE L1 -272 7201 7011 6 722 299 123 35 0 chr4 17985655 17985712 -137644408 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6 722 185 258 134 82 chr4 17986097 17986194 -137643926 + L2c LINE L2 3277 3378 -9 6 722 29 0 0 0 chr4 17986341 17986370 -137643750 + AT_rich Low_complexity Low_complexity 1 29 0 6 722 292 217 50 0 chr4 17986389 17986449 -137643671 - U6 snRNA snRNA -44 63 1 6 722 504 86 0 0 chr4 17986465 17986535 -137643585 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 722 285 186 0 0 chr4 17986554 17986624 -137643496 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 722 742 380 54 0 chr4 17986646 17986922 -137643198 - B4A SINE B4 -1 291 1 6 722 22 70 0 0 chr4 17988222 17988265 -137641855 + AT_rich Low_complexity Low_complexity 1 43 0 6 722 207 299 75 52 chr4 17989284 17989418 -137640702 + L2a LINE L2 3241 3377 -49 6 722 497 327 38 6 chr4 17990483 17990640 -137639480 - RSINE1 SINE B4 0 165 4 6 722 26 30 0 0 chr4 17990781 17990814 -137639306 + AT_rich Low_complexity Low_complexity 1 33 0 6 722 264 172 0 0 chr4 17991227 17991285 -137638835 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 722 557 28 14 0 chr4 17992012 17992083 -137638037 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 722 1447 148 14 53 chr4 17993229 17993514 -137636606 - Lx3C LINE L1 -7 6969 6696 6 722 1497 149 4 13 chr4 17993517 17993755 -137636365 + Lx3C LINE L1 6439 6674 -302 6 722 198 0 0 0 chr4 17993892 17993914 -137636206 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6 722 862 146 12 0 chr4 17994355 17994519 -137635601 + Lx2 LINE L1 6831 6996 -1 6 722 2874 170 2 43 chr4 17994523 17995052 -137635068 + Lx3C LINE L1 5293 5799 -87 6 722 12115 114 16 19 chr4 17995053 17995983 -137634137 + L1VL4 LINE L1 407 1338 -2221 6 722 185 0 40 0 chr4 17995983 17996008 -137634112 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 722 12115 99 23 21 chr4 17996008 17996112 -137634008 + L1VL4 LINE L1 1339 1443 -2116 6 722 2417 53 82 34 chr4 17996112 17996178 -137633942 + L1_Mus1 LINE L1 6199 6264 -303 6 722 3350 34 0 133 chr4 17996178 17996681 -137633439 - RLTR10C LTR ERVK 0 436 1 6 722 2417 53 82 34 chr4 17996681 17996966 -137633154 + L1_Mus1 LINE L1 6265 6567 0 6 722 12115 99 23 21 chr4 17996966 17998350 -137631770 + L1VL4 LINE L1 1444 2830 -729 6 722 1256 97 3 3 chr4 17998358 17998679 -137631441 + (TTCC)n Simple_repeat Simple_repeat 1 321 0 6 722 254 279 49 25 chr4 17998729 17998810 -137631310 + MTD LTR MaLR 49 131 -288 6 722 482 247 112 0 chr4 17998821 17998988 -137631132 + MTD LTR MaLR 147 361 -58 6 722 180 0 0 0 chr4 17998989 17999009 -137631111 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 722 1135 175 19 19 chr4 17999012 17999227 -137630893 + Lx3C LINE L1 5788 6002 -974 6 722 951 146 57 0 chr4 17999420 17999578 -137630542 + B2_Mm2 SINE B2 2 168 -27 6 722 1657 95 4 4 chr4 18002554 18002798 -137627322 - L1_Mus2 LINE L1 -1 6565 6322 1 722 1757 93 84 68 chr4 18002844 18003015 -137627105 + ORR1A0 LTR MaLR 11 188 -158 2 722 1017 136 0 0 chr4 18003015 18003162 -137626958 + B1_Mm SINE Alu 1 147 0 3 722 1757 93 84 68 chr4 18003162 18003313 -137626807 + ORR1A0 LTR MaLR 189 338 -8 2 722 663 189 0 0 chr4 18003316 18003448 -137626672 + (TATG)n Simple_repeat Simple_repeat 3 134 0 4 722 624 228 7 7 chr4 18003456 18003602 -137626518 - Lx3C LINE L1 -8 6968 6823 5 722 221 279 132 0 chr4 18003614 18003682 -137626438 + ID4_ SINE ID 3 79 -4 6 722 704 354 70 22 chr4 18003731 18004144 -137625976 - Lx8 LINE L1 -864 6609 6177 7 722 845 312 106 20 chr4 18004117 18004522 -137625598 + Lx8 LINE L1 6779 7218 -255 8 722 279 0 0 0 chr4 18005336 18005367 -137624753 + (T)n Simple_repeat Simple_repeat 1 31 0 9 722 1116 95 0 0 chr4 18005367 18005515 -137624605 - B1_Mus1 SINE Alu 0 148 1 1 722 3731 58 19 0 chr4 18006473 18006939 -137623181 - MT2C_Mm LTR ERVL 0 475 1 1 722 332 182 0 25 chr4 18007292 18007371 -137622749 - Lx6 LINE L1 -9 7451 7375 1 722 378 0 0 0 chr4 18007499 18007541 -137622579 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 722 24 0 0 0 chr4 18007855 18007879 -137622241 + AT_rich Low_complexity Low_complexity 1 24 0 1 722 1144 55 0 0 chr4 18008525 18008670 -137621450 - B1_Mm SINE Alu -2 145 1 1 722 306 73 0 0 chr4 18009051 18009092 -137621028 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 722 270 0 0 0 chr4 18009093 18009123 -137620997 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 722 318 193 35 0 chr4 18009387 18009444 -137620676 + B3 SINE B2 11 69 -147 1 722 513 193 125 57 chr4 18010330 18010522 -137619598 + Lx9 LINE L1 7409 7613 -31 1 722 307 294 18 73 chr4 18010766 18010876 -137619244 + B1F SINE Alu 34 137 -12 2 722 269 350 20 10 chr4 18012229 18012327 -137617793 + B1F2 SINE Alu 43 141 -8 2 722 459 0 0 0 chr4 18012565 18012616 -137617504 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 722 309 266 54 39 chr4 18013804 18013933 -137616187 + L1MC3 LINE L1 6949 7079 -706 2 722 917 137 7 0 chr4 18014177 18014316 -137615804 + B1_Mus1 SINE Alu 2 141 -7 2 722 633 27 0 0 chr4 18014316 18014391 -137615729 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 722 448 250 21 0 chr4 18014510 18014606 -137615514 + B1F2 SINE Alu 43 140 -9 2 722 423 188 0 0 chr4 18014620 18014705 -137615415 + L1_Mus4 LINE L1 6457 6541 -95 2 722 293 257 0 0 chr4 18015430 18015504 -137614616 + CT-rich Low_complexity Low_complexity 3 76 0 2 722 522 70 0 0 chr4 18015726 18015797 -137614323 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 722 6062 51 27 5 chr4 18016131 18016901 -137613219 + L1Md_F2 LINE L1 5783 6569 -13 3 722 21 0 0 0 chr4 18016941 18016962 -137613158 + AT_rich Low_complexity Low_complexity 1 21 0 3 722 229 276 180 49 chr4 18017152 18017274 -137612846 - RMER15 LTR ERVL -165 410 273 3 722 216 0 0 0 chr4 18017765 18017789 -137612331 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 722 8272 165 14 19 chr4 18017789 18019785 -137610335 - Lx2B LINE L1 -1 6999 5031 3 722 233 295 19 104 chr4 18020905 18021011 -137609109 + PB1 SINE Alu 15 111 -16 3 722 681 56 9 18 chr4 18021021 18021130 -137608990 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 3 722 183 320 47 57 chr4 18023102 18023208 -137606912 + L2a LINE L2 3307 3411 -15 3 722 376 262 78 0 chr4 18023351 18023492 -137606628 + L1MEc LINE L1 626 777 -5623 3 722 274 354 78 23 chr4 18023991 18024208 -137605912 - LTR40a LTR ERVL -287 232 4 3 722 318 106 0 0 chr4 18025912 18025959 -137604161 + (GGA)n Simple_repeat Simple_repeat 2 48 0 4 722 213 318 0 0 chr4 18025995 18026039 -137604081 + B3A SINE B2 57 100 -98 4 722 28 29 0 0 chr4 18027549 18027584 -137602536 + AT_rich Low_complexity Low_complexity 1 35 0 4 722 1993 125 6 27 chr4 18028045 18028373 -137601747 + ORR1A2 LTR MaLR 1 321 -6 4 722 306 0 0 0 chr4 18028560 18028594 -137601526 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 722 1483 251 144 26 chr4 18028792 18029209 -137600911 - Lx5 LINE L1 -78 6972 6507 4 722 241 221 0 13 chr4 18029205 18029283 -137600837 - L1_Mur3 LINE L1 -1256 4624 4548 4 722 528 267 50 0 chr4 18029283 18029403 -137600717 - B1_Mur2 SINE Alu -1 148 23 4 722 299 65 22 0 chr4 18029455 18029501 -137600619 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 722 960 55 8 0 chr4 18029509 18029637 -137600483 - B1_Mm SINE Alu 0 147 19 4 722 22 0 0 0 chr4 18030646 18030668 -137599452 + AT_rich Low_complexity Low_complexity 1 22 0 5 722 254 377 95 82 chr4 18030741 18030972 -137599148 + B4 SINE B4 37 270 -22 5 722 25 0 0 0 chr4 18031261 18031286 -137598834 + AT_rich Low_complexity Low_complexity 1 25 0 5 722 585 162 0 0 chr4 18032211 18032322 -137597798 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 722 948 253 84 61 chr4 18033014 18033424 -137596696 + MTE2a LTR MaLR 2 417 -2 5 722 642 304 5 47 chr4 18034343 18034536 -137595584 + B4 SINE B4 108 292 0 5 722 272 309 45 18 chr4 18034699 18034811 -137595309 + L2a LINE L2 3263 3377 -49 5 722 1474 246 27 35 chr4 18035879 18036254 -137593866 - ORR1C2 LTR MaLR -12 372 1 5 722 403 248 24 40 chr4 18036354 18036480 -137593640 + RMER20B LTR ERVK 1 124 -503 5 722 306 286 61 26 chr4 18036749 18036864 -137593256 + MER97c DNA MER1_type? 38 156 -934 5 722 225 130 84 24 chr4 18038170 18038336 -137591784 + (CTCA)n Simple_repeat Simple_repeat 3 178 0 6 722 24 0 0 0 chr4 18039558 18039582 -137590538 + AT_rich Low_complexity Low_complexity 1 24 0 6 722 351 0 0 0 chr4 18040152 18040191 -137589929 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 722 199 322 20 61 chr4 18040517 18040616 -137589504 - L3 LINE CR1 -791 3698 3604 6 722 26 30 0 0 chr4 18041870 18041903 -137588217 + AT_rich Low_complexity Low_complexity 1 33 0 6 722 213 39 0 0 chr4 18041982 18042008 -137588112 + (A)n Simple_repeat Simple_repeat 1 26 0 6 722 1150 82 0 0 chr4 18042118 18042265 -137587855 + B1_Mus1 SINE Alu 2 148 0 6 722 211 68 67 17 chr4 18042265 18042325 -137587795 + (CAA)n Simple_repeat Simple_repeat 3 65 0 6 722 23 0 0 0 chr4 18042446 18042469 -137587651 + AT_rich Low_complexity Low_complexity 1 23 0 6 722 216 0 0 0 chr4 18042519 18042543 -137587577 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 722 216 86 0 0 chr4 18042590 18042625 -137587495 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 7 722 312 294 0 0 chr4 18042631 18042716 -137587404 + B1F SINE Alu 59 143 -6 7 722 795 11 0 0 chr4 18042731 18042823 -137587297 + (GGGAA)n Simple_repeat Simple_repeat 2 93 0 7 722 291 114 0 0 chr4 18043741 18043785 -137586335 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 722 22 35 0 0 chr4 18051005 18051034 -137579086 + AT_rich Low_complexity Low_complexity 1 29 0 7 722 487 57 33 22 chr4 18051238 18051328 -137578792 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 722 22 0 0 0 chr4 18052342 18052364 -137577756 + AT_rich Low_complexity Low_complexity 1 22 0 7 722 312 119 0 0 chr4 18053265 18053324 -137576796 + (A)n Simple_repeat Simple_repeat 1 59 0 7 722 2488 88 6 0 chr4 18053996 18054337 -137575783 - L1_Mus2 LINE L1 -2 6564 6222 7 722 4946 31 23 2 chr4 18054349 18054950 -137575170 + L1Md_F2 LINE L1 5947 6561 -21 7 722 705 24 0 0 chr4 18054950 18055033 -137575087 + (TA)n Simple_repeat Simple_repeat 1 83 0 8 722 426 20 0 0 chr4 18055307 18055358 -137574762 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 722 22 0 0 0 chr4 18056558 18056580 -137573540 + AT_rich Low_complexity Low_complexity 1 22 0 8 722 370 287 10 19 chr4 18056724 18056827 -137573293 - B4A SINE B4 -188 104 3 8 722 249 328 82 42 chr4 18058993 18059346 -137570774 + HAL1 LINE L1 1193 1559 -948 8 722 201 94 0 0 chr4 18059602 18059634 -137570486 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 722 300 277 13 99 chr4 18059652 18059804 -137570316 + Lx7 LINE L1 5603 5741 -1955 8 722 31 26 0 0 chr4 18059807 18059845 -137570275 + AT_rich Low_complexity Low_complexity 1 38 0 8 722 7379 85 6 1 chr4 18060976 18062171 -137567949 - L1_Mus2 LINE L1 0 6566 5366 8 722 338 364 17 8 chr4 18062581 18062700 -137567420 + RSINE1 SINE B4 3 122 -43 8 722 22 56 0 0 chr4 18062846 18062882 -137567238 + AT_rich Low_complexity Low_complexity 1 36 0 9 722 2658 145 5 2 chr4 18063309 18063745 -137566375 - L1_Mus3 LINE L1 -3 6635 6199 9 722 356 107 0 0 chr4 18063777 18063833 -137566287 - L1Md_F2 LINE L1 -12 6570 6515 9 722 2906 58 0 0 chr4 18063833 18064195 -137565925 + L1Md_F2 LINE L1 6172 6533 -49 9 722 227 325 71 0 chr4 18064636 18064762 -137565358 - L1_Rod LINE L1 0 5847 5713 9 722 225 0 0 0 chr4 18065839 18065864 -137564256 + (A)n Simple_repeat Simple_repeat 1 25 0 9 722 951 75 0 0 chr4 18066010 18066156 -137563964 + (TC)n Simple_repeat Simple_repeat 2 147 0 9 722 297 0 0 0 chr4 18066156 18066188 -137563932 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 722 888 273 65 33 chr4 18066280 18066556 -137563564 - B4A SINE B4 0 292 8 9 722 1092 101 19 0 chr4 18067524 18067683 -137562437 - B2_Mm2 SINE B2 -7 188 27 9 722 2617 57 0 0 chr4 18067766 18068097 -137562023 - L1Md_F2 LINE L1 -12 6570 6240 9 722 268 365 146 0 chr4 18068310 18068502 -137561618 + ERVL-E-int LTR ERVL 3616 3835 -1832 1 722 240 267 67 0 chr4 18068864 18068939 -137561181 + ID4 SINE ID 2 81 -2 1 722 242 236 0 0 chr4 18068939 18068994 -137561126 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 722 306 0 0 0 chr4 18069031 18069065 -137561055 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 722 561 253 82 0 chr4 18071596 18071754 -137558366 + B3A SINE B2 2 172 -26 1 722 3753 99 31 5 chr4 18072802 18073358 -137556762 - L1_Mus3 LINE L1 -4 6634 6065 1 722 25 51 0 0 chr4 18073591 18073630 -137556490 + AT_rich Low_complexity Low_complexity 1 39 0 1 722 363 136 0 0 chr4 18073954 18074013 -137556107 + (A)n Simple_repeat Simple_repeat 1 59 0 1 722 334 339 63 16 chr4 18074536 18074662 -137555458 - B1F SINE Alu -8 141 10 1 722 380 40 25 74 chr4 18075534 18075615 -137554505 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 1 722 232 357 30 20 chr4 18075663 18075763 -137554357 - B4A SINE B4 -4 288 188 1 722 255 388 10 0 chr4 18075930 18076028 -137554092 - MLT1C LTR MaLR -56 411 313 1 722 310 316 83 41 chr4 18076665 18076810 -137553310 - MTEb LTR MaLR 0 379 229 1 722 21 0 0 0 chr4 18077222 18077243 -137552877 + AT_rich Low_complexity Low_complexity 1 21 0 1 722 1007 350 88 17 chr4 18077474 18078107 -137552013 - Lx8 LINE L1 -247 7226 6549 1 722 258 32 0 0 chr4 18078227 18078258 -137551862 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 722 766 111 0 0 chr4 18078318 18078435 -137551685 - L1_Mus3 LINE L1 -459 6179 6063 1 722 3318 96 4 2 chr4 18078435 18078906 -137551214 + L1_Mus3 LINE L1 6163 6634 -4 1 722 4142 31 0 0 chr4 18078909 18079398 -137550722 - L1Md_T LINE L1 -757 5126 4638 1 722 4226 14 0 0 chr4 18079396 18079880 -137550240 + L1Md_T LINE L1 5103 5586 -297 1 722 8434 33 0 1 chr4 18079880 18080877 -137549243 + L1Md_T LINE L1 5587 6582 0 1 722 269 154 46 0 chr4 18081575 18081640 -137548480 + T-rich Low_complexity Low_complexity 1 68 0 1 722 207 0 0 0 chr4 18082483 18082506 -137547614 + (TTTAG)n Simple_repeat Simple_repeat 3 25 0 1 722 1895 111 15 51 chr4 18083311 18083643 -137546477 - RLTRETN_Mm LTR ERVK 0 322 3 1 722 1198 312 31 17 chr4 18084518 18084938 -137545182 + Lx8 LINE L1 6335 6760 -713 1 722 2363 270 90 19 chr4 18085328 18086404 -137543716 - Lx6 LINE L1 -3 7457 6306 1 722 1114 282 67 37 chr4 18086400 18086863 -137543257 - Lx7 LINE L1 -1460 6236 5760 1 722 533 351 49 34 chr4 18086993 18087379 -137542741 + Lx8 LINE L1 6871 7262 -211 1 722 282 327 40 0 chr4 18087380 18087481 -137542639 + RMER15 LTR ERVL 426 530 -45 1 722 29 60 0 0 chr4 18087710 18087760 -137542360 + AT_rich Low_complexity Low_complexity 1 50 0 1 90 900 244 32 202 chr4 18087779 18087974 -137542146 - Lx3C LINE L1 -1821 4059 3847 1 723 261 0 0 0 chr4 18087974 18088003 -137542117 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 723 917 197 23 148 chr4 18088003 18088435 -137541685 - Lx3C LINE L1 -1180 5796 5674 1 723 400 191 85 9 chr4 18088454 18088560 -137541560 - L1_Mur3 LINE L1 -2467 3413 3300 1 723 225 282 13 90 chr4 18088598 18088676 -137541444 - B3A SINE B2 -112 86 15 1 723 2519 100 47 10 chr4 18088681 18089086 -137541034 - BGLII LTR ERVK 0 421 2 1 723 2514 191 80 75 chr4 18089102 18090074 -137540046 - RMER3D-int LTR ERVK -624 2218 1015 1 723 316 190 0 25 chr4 18090120 18090201 -137539919 + C-rich Low_complexity Low_complexity 3 81 0 1 723 1105 82 35 0 chr4 18090213 18090384 -137539736 + (TTTCC)n Simple_repeat Simple_repeat 1 177 0 1 723 588 106 38 38 chr4 18090443 18090549 -137539571 - RMER3D-int LTR ERVK -2278 564 466 1 723 541 259 77 46 chr4 18090561 18090820 -137539300 - RMER3D-int LTR ERVK -1907 935 669 1 723 2647 116 37 7 chr4 18090866 18091275 -137538845 - BGLII LTR ERVK 0 421 1 1 723 291 28 0 0 chr4 18091322 18091358 -137538762 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 723 486 0 0 0 chr4 18091358 18091411 -137538709 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 723 1981 174 6 3 chr4 18091412 18091747 -137538373 - RMER4A LTR ERVK -120 346 11 1 723 269 195 12 47 chr4 18091764 18091850 -137538270 - L1_Mur3 LINE L1 -2635 3245 3163 1 723 8157 156 35 9 chr4 18091869 18094161 -137535959 - Lx4A LINE L1 0 7058 4698 1 723 374 226 15 88 chr4 18094166 18094370 -137535750 - Lx4A LINE L1 -2710 3170 2982 1 723 240 318 47 0 chr4 18094640 18094725 -137535395 + L2a LINE L2 3305 3393 -33 1 723 550 314 90 61 chr4 18094845 18095157 -137534963 - MT2A LTR ERVL -87 446 126 1 723 1340 218 115 5 chr4 18095222 18095581 -137534539 + MTD LTR MaLR 13 405 -14 1 723 437 243 63 0 chr4 18095613 18095724 -137534396 + Lx4A LINE L1 6936 7053 -5 1 723 261 246 14 14 chr4 18095801 18095871 -137534249 + MTE2a LTR MaLR 306 375 -4 1 723 333 243 78 0 chr4 18095986 18096089 -137534031 - MLT1A0 LTR MaLR 0 365 255 1 723 592 359 91 4 chr4 18099112 18099375 -137530745 - B4A SINE B4 -6 286 1 1 723 4936 169 36 2 chr4 18099384 18100004 -137530116 - L1_Mur2 LINE L1 -504 5373 4729 1 723 252 0 0 0 chr4 18100004 18100032 -137530088 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 723 4936 169 36 2 chr4 18100032 18100353 -137529767 - L1_Mur2 LINE L1 -1149 4728 4400 1 723 312 312 10 31 chr4 18100355 18100451 -137529669 - RLTR18 LTR ERVK -522 94 1 1 723 7662 147 28 38 chr4 18101030 18102671 -137527449 + Lx2 LINE L1 5364 6987 -10 1 723 1828 203 93 93 chr4 18102671 18103188 -137526932 + RLTR18 LTR ERVK 78 594 -22 1 723 2154 231 15 60 chr4 18103194 18103742 -137526378 - RMER1C Other Other -9 1333 811 1 723 375 78 0 0 chr4 18103996 18104047 -137526073 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 723 679 291 106 37 chr4 18104317 18104563 -137525557 - RMER1C Other Other -580 762 500 1 723 2118 209 68 108 chr4 18104584 18104792 -137525328 + RMER6C LTR ERVK 5 209 -481 1 723 999 113 0 7 chr4 18104792 18104935 -137525185 - B1_Mus1 SINE Alu -6 142 1 1 723 2118 209 68 108 chr4 18104935 18105429 -137524691 + RMER6C LTR ERVK 210 679 -11 1 723 311 265 15 0 chr4 18105481 18105549 -137524571 + RLTR18 LTR ERVK 544 612 -4 1 723 254 73 24 0 chr4 18105557 18105598 -137524522 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 723 654 298 58 51 chr4 18105663 18106112 -137524008 + L1MA6 LINE L1 4323 4774 -1369 1 723 513 0 0 0 chr4 18106112 18106169 -137523951 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 723 1404 178 71 65 chr4 18106180 18106505 -137523615 - ORR1A2 LTR MaLR 0 327 1 1 723 393 102 0 0 chr4 18106514 18106573 -137523547 + (CAGGA)n Simple_repeat Simple_repeat 2 60 0 1 723 1196 288 102 46 chr4 18106601 18107602 -137522518 + L1MA6 LINE L1 4800 5906 -1567 1 723 542 333 6 28 chr4 18108459 18108641 -137521479 + MER117 DNA MER1_type 1 178 -19 1 723 22 35 0 0 chr4 18109117 18109146 -137520974 + AT_rich Low_complexity Low_complexity 1 29 0 1 723 665 267 133 36 chr4 18109367 18109433 -137520687 + Lx7 LINE L1 6366 6431 -1265 1 723 3263 93 4 31 chr4 18109433 18109921 -137520199 - MT2C_Mm LTR ERVL 0 475 1 1 723 665 267 133 36 chr4 18109921 18110079 -137520041 + Lx7 LINE L1 6432 6612 -1084 1 723 1704 276 26 26 chr4 18110080 18110585 -137519535 + Lx7 LINE L1 6841 7345 -351 1 723 548 304 140 21 chr4 18111622 18111857 -137518263 - B4 SINE B4 -27 265 3 1 723 241 242 0 57 chr4 18112919 18112989 -137517131 - L1P5 LINE L1 -704 5452 5387 1 723 2129 83 7 16 chr4 18113424 18113729 -137516391 - Lx3_Mus LINE L1 -9 7000 6699 1 723 1131 82 0 0 chr4 18113812 18113959 -137516161 + B1_Mus1 SINE Alu 2 148 0 1 723 208 265 29 0 chr4 18114822 18114890 -137515230 + (CACCAT)n Simple_repeat Simple_repeat 5 74 0 1 723 210 71 0 0 chr4 18114893 18114921 -137515199 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 723 192 125 0 0 chr4 18115342 18115374 -137514746 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 723 696 273 59 53 chr4 18116074 18116414 -137513706 - RLTR15 LTR ERVK -17 342 1 1 723 908 185 27 11 chr4 18116463 18116649 -137513471 - URR1A DNA MER1_type -1 225 37 1 723 336 385 10 0 chr4 18116976 18117072 -137513048 - Charlie17a DNA MER1_type -12 207 111 1 723 969 317 109 24 chr4 18117272 18117647 -137512473 - MTD LTR MaLR 0 419 13 1 723 381 58 0 0 chr4 18118223 18118275 -137511845 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 723 535 55 0 14 chr4 18119297 18119371 -137510749 - RLTR31_Mm LTR ERVK -488 73 1 1 723 2272 185 26 30 chr4 18119400 18119901 -137510219 + RLTR31_Mm LTR ERVK 1 499 -62 1 723 721 278 43 7 chr4 18120125 18120326 -137509794 + B3A SINE B2 3 211 -5 1 723 379 314 26 75 chr4 18120326 18120517 -137509603 + B3 SINE B2 1 179 -37 1 723 279 0 0 0 chr4 18120517 18120548 -137509572 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 1 723 379 314 26 75 chr4 18120548 18120583 -137509537 + B3 SINE B2 180 216 0 1 723 361 339 97 26 chr4 18120971 18121198 -137508922 + MTEa LTR MaLR 85 327 -52 1 723 866 97 8 0 chr4 18121191 18121315 -137508805 + B1_Mm SINE Alu 22 146 -1 1 723 382 219 119 8 chr4 18121842 18121975 -137508145 + L1MA4 LINE L1 5768 5929 -371 1 723 249 353 38 29 chr4 18122174 18122279 -137507841 + RSINE1 SINE B4 4 109 -56 1 723 315 0 0 0 chr4 18122329 18122364 -137507756 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 723 1490 202 90 12 chr4 18122458 18122779 -137507341 + ORR1B1 LTR MaLR 47 392 -2 1 723 8683 177 26 65 chr4 18122781 18124896 -137505224 + ORR1B1-int LTR MaLR 1 1772 -191 1 723 1708 208 39 36 chr4 18124897 18125286 -137504834 + ORR1B1 LTR MaLR 5 394 0 1 723 21 36 0 0 chr4 18125287 18125315 -137504805 + AT_rich Low_complexity Low_complexity 1 28 0 1 723 2604 38 0 0 chr4 18126130 18126444 -137503676 - L1Md_T LINE L1 0 6582 6269 1 723 1138 159 58 0 chr4 18126741 18126947 -137503173 + RMER6C LTR ERVK 1 218 -472 1 723 6402 130 18 13 chr4 18126947 18127965 -137502155 + RLTR13D5 LTR ERVK 1 1023 0 1 723 1632 215 73 47 chr4 18127965 18128431 -137501689 + RMER6C LTR ERVK 213 690 0 1 723 450 0 0 0 chr4 18129156 18129206 -137500914 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 723 2404 184 23 12 chr4 18130681 18131161 -137498959 + L1Md_F LINE L1 587 1071 -5448 1 723 10443 73 5 19 chr4 18131155 18132608 -137497512 - L1Md_F2 LINE L1 -945 4938 3507 1 723 4692 84 8 5 chr4 18132590 18133238 -137496882 + L1Md_F2 LINE L1 4936 5585 -298 1 723 6513 107 17 26 chr4 18133239 18134240 -137495880 + L1Md_F2 LINE L1 5587 6578 -4 1 723 451 398 40 13 chr4 18135491 18135708 -137494412 + B4 SINE B4 5 227 -65 1 723 247 383 83 45 chr4 18135708 18135821 -137494299 + RSINE1 SINE B4 2 124 -41 1 723 294 29 0 0 chr4 18135821 18135856 -137494264 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 723 477 0 0 0 chr4 18135856 18135908 -137494212 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 723 247 383 83 45 chr4 18135908 18135949 -137494171 + RSINE1 SINE B4 125 162 -3 1 723 1917 258 54 25 chr4 18136776 18137297 -137492823 + RMER1B Other Other 1 536 -530 2 723 2816 235 90 46 chr4 18137320 18137936 -137492184 + RMER1B Other Other 2 796 -270 2 723 4281 44 0 6 chr4 18137936 18138460 -137491660 + L1Md_F2 LINE L1 6062 6582 0 2 723 2816 223 45 53 chr4 18138460 18138723 -137491397 + RMER1B Other Other 735 1066 0 2 723 182 77 0 71 chr4 18138724 18138766 -137491354 + (A)n Simple_repeat Simple_repeat 1 39 0 2 723 233 28 0 0 chr4 18139009 18139045 -137491075 - L1_Mus2 LINE L1 0 6566 6531 2 723 12227 164 14 5 chr4 18139425 18141718 -137488402 - L1_Mur1 LINE L1 -784 5102 2789 2 723 5119 198 6 17 chr4 18141718 18142745 -137487375 + Lx2B LINE L1 5981 6996 -4 2 723 21 0 0 0 chr4 18143247 18143268 -137486852 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 1721 55 14 0 chr4 18143947 18144164 -137485956 + L1Md_F2 LINE L1 5367 5586 -297 2 723 7448 63 27 5 chr4 18144164 18145137 -137484983 + L1Md_F2 LINE L1 5587 6580 -2 2 723 201 139 0 0 chr4 18145160 18145203 -137484917 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 2 723 3201 50 3 0 chr4 18145337 18145721 -137484399 + IAPEY_LTR LTR ERVK 1 385 0 2 723 188 349 89 28 chr4 18146109 18146289 -137483831 + MIR SINE MIR 34 224 -38 2 723 360 153 0 0 chr4 18146756 18146841 -137483279 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 723 432 0 0 0 chr4 18146841 18146889 -137483231 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 723 261 305 73 10 chr4 18146904 18147000 -137483120 - PB1 SINE Alu -24 103 2 2 723 427 290 89 28 chr4 18147198 18147489 -137482631 + L1MC1 LINE L1 6023 6331 -2 2 723 38212 9 0 7 chr4 18148768 18154192 -137475928 + L1Md_A LINE L1 205 5586 -297 2 723 8856 9 1 0 chr4 18154192 18155187 -137474933 + L1Md_A LINE L1 5587 6582 0 2 723 21 0 0 0 chr4 18155674 18155695 -137474425 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 874 59 0 0 chr4 18155789 18155907 -137474213 - RLTR13D4 LTR ERVK -151 882 765 2 723 534 165 0 0 chr4 18155902 18155987 -137474133 - RLTR13D4 LTR ERVK -948 85 1 2 723 595 269 14 1 chr4 18156000 18156167 -137473953 - Lx7 LINE L1 -734 6726 6559 2 723 907 257 78 7 chr4 18156193 18156487 -137473633 - Lx7 LINE L1 -1241 6455 6141 2 723 268 260 10 0 chr4 18156485 18156585 -137473535 + Lx9 LINE L1 7543 7643 -1 2 723 957 34 0 0 chr4 18157069 18157186 -137472934 + (TTC)n Simple_repeat Simple_repeat 2 118 0 2 723 1097 88 0 20 chr4 18157204 18157215 -137472905 - B1_Mus2 SINE Alu 0 147 139 2 723 180 0 0 0 chr4 18157215 18157235 -137472885 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 723 1097 88 0 20 chr4 18157235 18157373 -137472747 - B1_Mus2 SINE Alu -9 138 1 2 723 432 0 0 0 chr4 18158095 18158143 -137471977 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 723 258 105 0 0 chr4 18158143 18158180 -137471940 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 723 1269 303 31 25 chr4 18158976 18159450 -137470670 - Lx6 LINE L1 -153 7543 6803 2 723 650 179 49 21 chr4 18159453 18159596 -137470524 - Lx7 LINE L1 -172 5708 5562 2 723 689 316 73 13 chr4 18160520 18161042 -137469078 - L1MA6 LINE L1 -6 6294 5713 2 723 654 262 92 29 chr4 18161108 18161532 -137468588 + L1M2 LINE L1 5222 5679 -621 2 723 2896 225 45 6 chr4 18161727 18162507 -137467613 - Lx4B LINE L1 0 7000 6184 2 723 256 352 0 0 chr4 18162524 18162616 -137467504 - ID4 SINE ID -56 96 5 2 723 1220 114 0 11 chr4 18163137 18163323 -137466797 - B2_Mm2 SINE B2 -7 188 5 2 723 192 40 0 0 chr4 18164939 18164964 -137465156 + (A)n Simple_repeat Simple_repeat 1 25 0 2 723 186 189 0 0 chr4 18165066 18165103 -137465017 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 723 307 297 88 3 chr4 18166359 18166483 -137463637 + Lx8 LINE L1 5758 5895 -1155 2 723 21224 171 50 11 chr4 18166638 18169564 -137460556 + Lx LINE L1 379 3490 -2393 2 723 296 24 24 0 chr4 18169564 18169605 -137460515 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 2 723 21224 181 56 11 chr4 18169605 18171732 -137458388 + Lx LINE L1 3491 5627 -256 2 723 2307 69 119 11 chr4 18171732 18172084 -137458036 + RLTR10 LTR ERVK 1 390 0 2 723 21224 149 56 15 chr4 18172084 18173060 -137457060 + Lx LINE L1 5628 6645 -9 2 723 492 333 65 46 chr4 18173154 18173313 -137456807 + Lx8 LINE L1 6128 6286 -1187 2 723 2796 98 5 2 chr4 18173313 18173712 -137456408 - MTB LTR MaLR 0 400 1 2 723 492 333 65 46 chr4 18173712 18173964 -137456156 + Lx8 LINE L1 6287 6547 -926 2 723 716 297 88 25 chr4 18173992 18174319 -137455801 - ORR1D1 LTR MaLR -5 354 1 2 723 1132 336 80 29 chr4 18174319 18174868 -137455252 + Lx8 LINE L1 6578 7154 -319 2 723 430 358 12 6 chr4 18175343 18175506 -137454614 + Lx8 LINE L1 7159 7322 -151 2 723 201 232 0 0 chr4 18175832 18175901 -137454219 + GA-rich Low_complexity Low_complexity 2 70 0 2 723 4430 199 29 11 chr4 18175936 18176827 -137453293 - RMER13B LTR ERVK 0 908 2 2 723 852 39 0 0 chr4 18177795 18177899 -137452221 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 2 723 358 213 0 0 chr4 18178337 18178412 -137451708 - L1_Mur2 LINE L1 -645 5232 5158 2 723 1030 150 54 5 chr4 18178410 18178631 -137451489 + L1_Mur2 LINE L1 3096 3327 -2550 2 723 276 390 25 25 chr4 18179154 18179275 -137450845 + LTR33C LTR ERVL 12 132 -497 2 723 233 391 48 41 chr4 18179697 18180089 -137450031 + MLT1H-int LTR MaLR 35 429 -980 2 723 768 169 48 0 chr4 18180478 18180644 -137449476 + L1_Mus3 LINE L1 2351 2524 -3356 2 723 8451 217 23 46 chr4 18180649 18181768 -137448352 + L1_Mus3 LINE L1 3527 4586 -1294 2 723 1372 145 25 8 chr4 18181768 18182005 -137448115 - Lx3A LINE L1 -8 6973 6733 2 723 8451 217 23 46 chr4 18182005 18183167 -137446953 + L1_Mus3 LINE L1 4587 5756 -124 2 723 390 320 17 11 chr4 18183174 18183351 -137446769 + Lx7 LINE L1 6042 6219 -1477 2 723 6323 154 52 4 chr4 18183353 18184733 -137445387 + L1_Mus3 LINE L1 5728 6714 -746 2 723 2593 135 21 46 chr4 18184755 18185191 -137444929 + L1_Mus3 LINE L1 6177 6601 -37 2 723 320 256 35 0 chr4 18185203 18185289 -137444831 - Lx7 LINE L1 -364 7332 7244 2 723 630 99 0 0 chr4 18185289 18185380 -137444740 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 723 463 146 0 12 chr4 18185408 18185491 -137444629 + L1_Mus3 LINE L1 6748 6829 -631 2 723 1276 263 116 26 chr4 18185506 18185859 -137444261 + Lx7 LINE L1 7117 7516 -180 2 723 2722 103 5 3 chr4 18185859 18186250 -137443870 - MTA_Mm LTR MaLR -2 394 3 2 723 1276 263 116 26 chr4 18186250 18186396 -137443724 + Lx7 LINE L1 7517 7661 -35 2 723 1001 271 118 19 chr4 18186815 18187138 -137442982 + MTE2b LTR MaLR 22 376 -3 2 723 24 0 0 0 chr4 18188218 18188242 -137441878 + AT_rich Low_complexity Low_complexity 1 24 0 2 723 215 122 0 58 chr4 18188375 18188427 -137441693 + A-rich Low_complexity Low_complexity 5 53 0 2 723 460 352 6 11 chr4 18188775 18188953 -137441167 - MTEb LTR MaLR 0 379 203 2 723 1919 140 37 0 chr4 18189355 18189677 -137440443 + Lx2A1 LINE L1 6666 6999 -9 2 723 234 0 0 0 chr4 18189753 18189779 -137440341 + (CAAAC)n Simple_repeat Simple_repeat 5 30 0 2 723 348 43 0 0 chr4 18190049 18190095 -137440025 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 723 253 224 11 66 chr4 18190764 18190855 -137439265 + MER4B-int LTR ERV1 1111 1196 -5562 2 723 411 211 0 0 chr4 18190855 18190945 -137439175 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 723 192 0 125 0 chr4 18192259 18192307 -137437813 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 2 723 378 320 116 86 chr4 18192903 18193474 -137436646 + L1MEf LINE L1 940 1527 -4673 2 723 946 234 36 5 chr4 18193572 18193791 -137436329 - Lx9 LINE L1 -998 6646 6421 2 723 1367 271 13 11 chr4 18193777 18194158 -137435962 + Lx9 LINE L1 6636 7017 -627 2 723 1167 294 50 39 chr4 18194176 18194801 -137435319 - Lx7 LINE L1 -1743 5953 5318 2 723 3407 239 82 82 chr4 18194820 18195513 -137434607 - Lx5 LINE L1 0 7050 6307 2 723 283 236 83 0 chr4 18195513 18195585 -137434535 - RLTR22_Mur LTR ERVK 0 1848 1771 2 723 3407 239 82 82 chr4 18195585 18195837 -137434283 - Lx5 LINE L1 0 6306 6034 2 723 1313 281 52 25 chr4 18195826 18196438 -137433682 - Lx7 LINE L1 -551 5329 4701 2 723 7937 144 26 1 chr4 18196436 18197732 -137432388 - Lx2 LINE L1 -1 6996 5668 2 723 2412 136 12 17 chr4 18197738 18198149 -137431971 - RLTR9E LTR ERVK 0 409 1 2 723 513 82 0 27 chr4 18198151 18198226 -137431894 - ETnERV2-int LTR ERVK -3 7403 7331 2 723 5712 91 15 65 chr4 18198441 18199331 -137430789 - ETnERV2-int LTR ERVK -984 6422 5578 2 723 1724 169 87 28 chr4 18199331 18199901 -137430219 - RLTR1B LTR ERV1 0 624 3 2 723 295 21 42 21 chr4 18199905 18199953 -137430167 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 723 16201 117 40 3 chr4 18199958 18201568 -137428552 - ETnERV2-int LTR ERVK -1825 5581 3932 2 723 387 0 0 0 chr4 18201568 18201611 -137428509 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 723 16201 117 40 3 chr4 18201611 18202437 -137427683 - ETnERV2-int LTR ERVK -3475 3931 3056 2 723 774 244 5 32 chr4 18202437 18202623 -137427497 - ETnERV2-int LTR ERVK -4798 2608 2428 2 723 1854 187 34 18 chr4 18202628 18203064 -137427056 - MMETn-int LTR ERVK -3681 1163 721 2 723 275 125 0 0 chr4 18203069 18203117 -137427003 - MMETn-int LTR ERVK -5218 188 141 2 723 378 203 0 13 chr4 18203522 18203597 -137426523 - ETnERV2-int LTR ERVK -5080 2164 2091 2 723 986 197 18 113 chr4 18203590 18203916 -137426204 - MMETn-int LTR ERVK -4548 296 2 2 723 2382 147 12 17 chr4 18203918 18204326 -137425794 - RLTR9E LTR ERVK 0 409 4 2 723 627 48 0 0 chr4 18204326 18204409 -137425711 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 723 842 171 50 6 chr4 18204415 18204574 -137425546 + L1_Mur2 LINE L1 2061 2226 -3651 2 723 416 163 12 0 chr4 18204577 18204663 -137425457 + L1_Mur2 LINE L1 2362 2448 -3429 2 723 31549 75 25 17 chr4 18204702 18211051 -137419069 - L1Md_F2 LINE L1 -5 6577 177 2 723 5790 229 69 73 chr4 18211052 18213675 -137416445 + L1_Mur2 LINE L1 2433 5044 -833 2 723 1121 259 80 9 chr4 18213675 18214002 -137416118 + RLTR25A LTR ERVK 1 350 -678 2 723 1091 159 18 18 chr4 18214005 18214223 -137415897 - L1_Mur2 LINE L1 -909 4968 4751 2 723 1175 185 31 5 chr4 18214224 18214447 -137415673 + RLTR25A LTR ERVK 339 567 -536 2 723 1089 102 0 0 chr4 18214602 18214749 -137415371 + B1_Mus1 SINE Alu 2 148 0 2 723 7146 164 6 42 chr4 18214782 18215280 -137414840 - L1_Mm LINE L1 -791 5092 4622 2 723 3049 66 13 0 chr4 18215280 18215673 -137414447 + L1_Mus1 LINE L1 6168 6565 -2 2 723 7146 164 6 42 chr4 18215673 18216583 -137413537 - L1_Mm LINE L1 -1262 4621 3734 2 723 3950 164 1 111 chr4 18216581 18217115 -137413005 + Lx LINE L1 5089 5532 -351 2 723 2131 140 37 30 chr4 18217115 18217520 -137412600 - RLTR9E LTR ERVK -1 408 1 2 723 6367 138 34 13 chr4 18217520 18218606 -137411514 + Lx LINE L1 5533 6642 -12 2 723 213 39 0 0 chr4 18218606 18218632 -137411488 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2 723 675 136 0 0 chr4 18218634 18218744 -137411376 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 723 412 288 24 8 chr4 18218875 18219001 -137411119 + RLTR25B LTR ERVK 901 1028 0 2 724 3573 175 30 5 chr4 18219027 18219686 -137410434 + Lx4B LINE L1 6375 7050 -8 2 724 2787 289 69 45 chr4 18219773 18221643 -137408477 - L1_Mur3 LINE L1 -1251 4629 2715 2 724 924 273 77 35 chr4 18221614 18222043 -137408077 - L1_Mur3 LINE L1 -3485 2395 1949 2 724 333 0 0 0 chr4 18223086 18223123 -137406997 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 724 243 0 0 0 chr4 18223123 18223149 -137406971 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 724 216 111 0 0 chr4 18224019 18224055 -137406065 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 724 527 29 14 0 chr4 18224159 18224228 -137405892 + (TCC)n Simple_repeat Simple_repeat 2 71 0 2 724 275 128 62 25 chr4 18224824 18224904 -137405216 + RMER17C LTR ERVK 183 265 -145 2 724 369 0 0 0 chr4 18225122 18225163 -137404957 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 724 369 0 0 0 chr4 18225163 18225203 -137404917 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 724 540 160 0 0 chr4 18226897 18226997 -137403123 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 724 243 232 0 0 chr4 18227181 18227237 -137402883 - L1_Mur1 LINE L1 -270 5616 5561 3 724 7918 131 133 29 chr4 18227231 18228498 -137401622 + L1_Mur1 LINE L1 3854 5251 -635 3 724 825 99 0 0 chr4 18228498 18228619 -137401501 + (CATATA)n Simple_repeat Simple_repeat 3 123 0 3 724 7918 131 133 29 chr4 18228619 18228895 -137401225 + L1_Mur1 LINE L1 5252 5559 -327 3 724 200 224 0 20 chr4 18229615 18229665 -137400455 + CT-rich Low_complexity Low_complexity 3 51 0 3 724 518 352 57 0 chr4 18229742 18229901 -137400219 - B4A SINE B4 -23 269 102 3 724 22 56 0 0 chr4 18231799 18231835 -137398285 + AT_rich Low_complexity Low_complexity 1 36 0 3 724 3117 46 0 0 chr4 18232110 18232499 -137397621 + MTA_Mm LTR MaLR 1 389 -7 3 724 369 62 0 0 chr4 18232655 18232703 -137397417 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 724 4152 182 66 11 chr4 18233209 18234129 -137395991 + Lx3C LINE L1 6004 6974 -2 3 724 207 0 0 0 chr4 18234282 18234305 -137395815 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 724 547 372 52 3 chr4 18235102 18235407 -137394713 - L3 LINE CR1 -730 3759 3440 3 724 261 270 48 0 chr4 18235557 18235620 -137394500 + RSINE1 SINE B4 53 118 -47 3 724 381 259 18 141 chr4 18235982 18236202 -137393918 - Lx7 LINE L1 -61 7635 7443 3 724 5664 205 34 24 chr4 18236206 18237076 -137393044 - L1_Mur3 LINE L1 -372 5508 4625 3 724 437 0 19 0 chr4 18237076 18237129 -137392991 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 724 5664 205 34 24 chr4 18237129 18237660 -137392460 - L1_Mur3 LINE L1 -1256 4624 4094 3 724 2048 156 29 29 chr4 18237661 18238111 -137392009 - L1_Mur3 LINE L1 -4110 1770 1321 3 724 279 0 0 0 chr4 18238111 18238142 -137391978 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 724 1515 239 3 24 chr4 18238142 18238515 -137391605 - L1_Mur3 LINE L1 -6541 1187 823 3 724 445 354 36 58 chr4 18239760 18240036 -137390084 + MLT-int LTR MaLR 1298 1567 -168 3 724 3147 271 56 26 chr4 18240111 18241015 -137389105 + Lx6 LINE L1 6512 7442 -18 3 724 1199 111 11 6 chr4 18241124 18241306 -137388814 + B2_Mm2 SINE B2 1 183 -12 3 724 327 165 70 12 chr4 18241306 18241392 -137388728 + L1_Mus3 LINE L1 6546 6636 -2 3 724 33367 78 19 3 chr4 18241460 18244682 -137385438 - L1Md_F2 LINE L1 0 6582 3337 3 724 2758 59 108 0 chr4 18244682 18245053 -137385067 - IAPLTR2a LTR ERVK 0 411 1 3 724 33367 80 9 2 chr4 18245053 18247981 -137382139 - L1Md_F2 LINE L1 -2547 3336 391 3 724 1987 167 39 14 chr4 18247982 18248340 -137381780 - RLTR33 LTR ERVK -311 367 1 3 724 706 335 30 9 chr4 18248904 18249136 -137380984 + B4 SINE B4 2 238 -54 3 724 21 57 0 0 chr4 18249328 18249363 -137380757 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 607 326 117 34 chr4 18250098 18250422 -137379698 - MTE2b LTR MaLR 0 379 29 3 724 270 346 0 0 chr4 18250412 18250493 -137379627 - MTE2b LTR MaLR -281 98 18 3 724 25 0 0 28 chr4 18250549 18250571 -137379549 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 589 78 11 0 chr4 18250571 18250661 -137379459 - L1Md_A LINE L1 -4 6578 6488 3 724 25 0 0 28 chr4 18250661 18250674 -137379446 + AT_rich Low_complexity Low_complexity 1 13 0 3 724 235 372 39 0 chr4 18251052 18251154 -137378966 + MLT1D LTR MaLR 253 358 -147 3 724 311 272 129 29 chr4 18251809 18251949 -137378171 - RMER15 LTR ERVL 0 575 422 3 724 679 58 0 0 chr4 18253143 18253230 -137376890 + B1_Mus2 SINE Alu 61 147 0 3 724 315 253 0 26 chr4 18253708 18253785 -137376335 + B4A SINE B4 4 78 -214 3 724 246 379 0 0 chr4 18253820 18253907 -137376213 + B4A SINE B4 200 286 -6 3 724 201 39 0 0 chr4 18255096 18255122 -137374998 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 3 724 283 273 88 29 chr4 18255138 18255240 -137374880 + MLT1J LTR MaLR 46 153 -359 3 724 516 32 0 0 chr4 18255311 18255373 -137374747 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 724 25 65 0 0 chr4 18256519 18256565 -137373555 + AT_rich Low_complexity Low_complexity 1 46 0 3 724 7078 77 22 0 chr4 18256692 18257630 -137372490 - L1_Mus2 LINE L1 0 6566 5608 3 724 24 53 0 0 chr4 18257812 18257850 -137372270 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 748 134 7 7 chr4 18258168 18258303 -137371817 + (TTC)n Simple_repeat Simple_repeat 1 135 0 3 724 432 127 0 0 chr4 18258291 18258304 -137371816 + (TC)n Simple_repeat Simple_repeat 1 13 0 3 724 513 0 0 0 chr4 18258304 18258361 -137371759 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 3 724 432 127 0 0 chr4 18258361 18258418 -137371702 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 724 659 314 26 43 chr4 18258462 18258811 -137371309 - RLTR15 LTR ERVK -16 343 1 3 724 2425 76 13 0 chr4 18259016 18259332 -137370788 - L1Md_F2 LINE L1 -95 5788 5469 3 724 3436 54 0 2 chr4 18259326 18259755 -137370365 + L1Md_F2 LINE L1 5773 6200 -382 3 724 1422 114 72 16 chr4 18259756 18260005 -137370115 + L1Md_F2 LINE L1 6301 6563 -19 3 724 31 26 0 0 chr4 18260005 18260043 -137370077 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 195 152 0 0 chr4 18260077 18260123 -137369997 + A-rich Low_complexity Low_complexity 1 46 0 3 724 405 330 37 23 chr4 18260136 18260350 -137369770 + Lx6 LINE L1 72 288 -7440 3 724 351 222 110 14 chr4 18260377 18260523 -137369597 + Lx6 LINE L1 860 1019 -6709 3 724 12398 62 1 0 chr4 18260518 18262103 -137368017 + L1Md_F2 LINE L1 4001 5586 -297 3 724 7834 58 2 1 chr4 18262103 18263098 -137367022 + L1Md_F2 LINE L1 5587 6582 0 3 724 3659 222 48 59 chr4 18263100 18263814 -137366306 + Lx6 LINE L1 988 1706 -4174 3 724 1698 148 56 6 chr4 18263814 18264134 -137365986 + Lx2 LINE L1 6662 6997 0 3 724 3659 206 37 84 chr4 18264134 18264682 -137365438 + Lx6 LINE L1 1707 2215 -3665 3 724 207 88 0 0 chr4 18264682 18264716 -137365404 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 724 1116 82 0 0 chr4 18264723 18264869 -137365251 - B1_Mus2 SINE Alu 0 147 2 3 724 3659 206 37 84 chr4 18264869 18265106 -137365014 + Lx6 LINE L1 2216 2421 -3459 3 724 3295 192 81 9 chr4 18265112 18265360 -137364760 - Lx2B LINE L1 0 7000 6757 3 724 4373 189 34 28 chr4 18265360 18266262 -137363858 + RMER13B LTR ERVK 1 908 0 3 724 3295 192 81 9 chr4 18266262 18266666 -137363454 - Lx2B LINE L1 -244 6756 6301 3 724 1049 141 5 25 chr4 18266668 18266865 -137363255 - MusHAL1 LINE L1 -1397 1315 1123 3 724 2151 209 8 56 chr4 18267238 18267629 -137362491 - L1_Mur1 LINE L1 -3552 2334 1968 3 724 489 17 0 0 chr4 18267629 18267687 -137362433 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 3 724 2151 209 8 56 chr4 18267687 18267882 -137362238 - L1_Mur1 LINE L1 -3919 1967 1776 3 724 846 219 77 29 chr4 18267888 18267995 -137362125 + Lx6 LINE L1 3283 3384 -2496 3 724 3107 63 2 0 chr4 18267995 18268392 -137361728 - L1_Mus2 LINE L1 -1 6565 6168 3 724 846 219 77 29 chr4 18268392 18268557 -137361563 + Lx6 LINE L1 3385 3568 -2312 3 724 3975 185 72 86 chr4 18268569 18269715 -137360405 + Lx6 LINE L1 3746 4875 -1005 3 724 1809 261 37 55 chr4 18269682 18270654 -137359466 + Lx6 LINE L1 5340 6294 -1166 3 724 1060 258 78 3 chr4 18270653 18270839 -137359281 + Lx6 LINE L1 6677 6869 -591 3 724 8100 26 0 3 chr4 18270839 18271771 -137358349 + RLTR13B3 LTR ERVK 1 929 0 3 724 1060 258 78 3 chr4 18271771 18271868 -137358252 + Lx6 LINE L1 6870 6981 -479 3 724 25 0 0 0 chr4 18271868 18271893 -137358227 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 4444 181 71 83 chr4 18271893 18273145 -137356975 - Lx3A LINE L1 -9 6972 5736 3 724 1141 258 31 0 chr4 18273141 18273397 -137356723 + Lx6 LINE L1 6985 7248 -212 3 724 23 33 0 0 chr4 18273705 18273735 -137356385 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 527 345 8 25 chr4 18273748 18273935 -137356185 - B3A SINE B2 -36 180 2 3 724 6198 106 72 11 chr4 18274329 18275315 -137354805 - Lx3_Mus LINE L1 -8 7001 5956 3 724 2732 152 64 18 chr4 18275319 18275816 -137354304 - Lx LINE L1 -1 6653 6134 3 724 405 0 0 0 chr4 18276126 18276171 -137353949 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 724 11598 102 10 10 chr4 18276822 18279268 -137350852 - L1_Mus2 LINE L1 -6 6560 4112 3 724 350 280 73 29 chr4 18279706 18279842 -137350278 - LTR40a LTR ERVL -31 488 347 3 724 591 286 56 3 chr4 18280139 18280450 -137349670 - ORR1D2 LTR MaLR 0 370 9 3 724 3311 105 15 0 chr4 18280627 18281172 -137348948 - L1_Mus3 LINE L1 -567 6071 5519 3 724 3518 116 11 18 chr4 18281172 18281715 -137348405 + L1_Mus3 LINE L1 6098 6636 -2 3 724 1093 222 164 17 chr4 18281715 18282013 -137348107 + ORR1D1 LTR MaLR 21 362 -12 3 724 955 336 17 17 chr4 18282014 18282359 -137347761 + MTEb LTR MaLR 35 379 0 3 724 2096 205 47 0 chr4 18282472 18282881 -137347239 - Lx5 LINE L1 -353 6697 6270 3 724 753 12 0 0 chr4 18282995 18283081 -137347039 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 724 447 209 0 54 chr4 18283081 18283192 -137346928 - RMER17A-int LTR ERVK -1621 107 3 3 724 1968 218 83 19 chr4 18283194 18283666 -137346454 - RMER17B LTR ERVK 0 958 457 3 724 1893 134 101 6 chr4 18283666 18284012 -137346108 + RMER17A-int LTR ERVK 1348 1726 -2 3 724 4704 135 35 94 chr4 18284014 18284977 -137345143 + RMER17A2 LTR ERVK 1 906 0 3 724 644 281 125 40 chr4 18284980 18285333 -137344787 - Lx5 LINE L1 -775 6275 5893 3 724 1094 178 0 5 chr4 18285327 18285536 -137344584 - L1_Mur2 LINE L1 -859 5018 4811 3 724 4196 162 30 13 chr4 18285511 18286385 -137343735 - L1_Mur2 LINE L1 -2496 3384 2494 3 724 180 0 0 0 chr4 18286385 18286405 -137343715 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 724 2921 236 212 23 chr4 18286405 18286731 -137343389 - L1_Mur2 LINE L1 -3387 2493 1963 3 724 339 25 0 0 chr4 18286731 18286771 -137343349 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 724 2921 236 212 23 chr4 18286771 18287278 -137342842 - L1_Mur2 LINE L1 -3918 1962 1355 3 724 441 299 31 121 chr4 18287260 18287583 -137342537 - L1_Mur2 LINE L1 -6181 905 612 3 724 256 325 12 49 chr4 18287926 18288007 -137342113 - ID4 SINE ID -4 79 2 3 724 4610 213 25 18 chr4 18288163 18289171 -137340949 + Lx3C LINE L1 5915 6929 -47 3 724 10632 97 4 26 chr4 18289171 18291486 -137338634 - L1_Mus1 LINE L1 -60 6507 4250 3 724 2120 153 35 3 chr4 18291655 18292028 -137338092 + L1_Mur2 LINE L1 5065 5449 -428 3 724 1217 144 5 0 chr4 18292023 18292211 -137337909 + Lx2 LINE L1 6442 6630 -367 3 724 1127 148 96 0 chr4 18292211 18292420 -137337700 + Lx2 LINE L1 6769 6997 0 3 724 21 71 0 0 chr4 18293601 18293643 -137336477 + AT_rich Low_complexity Low_complexity 1 42 0 3 724 22 70 0 0 chr4 18293714 18293757 -137336363 + AT_rich Low_complexity Low_complexity 1 43 0 3 724 733 253 52 65 chr4 18294216 18294549 -137335571 + L1M1 LINE L1 5273 5610 -558 3 724 2813 290 26 22 chr4 18294658 18295574 -137334546 - Lx6 LINE L1 -781 6679 5760 3 724 655 155 106 23 chr4 18295581 18295713 -137334407 + Lx7 LINE L1 6709 6851 -845 3 724 371 360 48 0 chr4 18295853 18296000 -137334120 + LTR53 LTR ERVL 335 488 -31 3 724 334 325 59 24 chr4 18300628 18300798 -137329322 + L1M2 LINE L1 3339 3514 -2629 3 724 188 0 67 67 chr4 18300801 18300846 -137329274 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 3 724 25 0 0 0 chr4 18302012 18302037 -137328083 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 320 264 14 0 chr4 18302538 18302610 -137327510 - MTD LTR MaLR 0 400 328 3 724 884 131 0 38 chr4 18302626 18302809 -137327311 + CT-rich Low_complexity Low_complexity 2 177 0 3 724 1329 58 0 0 chr4 18302814 18302985 -137327135 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 724 2388 209 102 12 chr4 18302985 18303562 -137326558 - Lx4B LINE L1 -19 7039 6411 3 724 1125 248 97 9 chr4 18303612 18303933 -137326187 - MTD LTR MaLR -70 349 1 3 724 25 31 0 0 chr4 18303938 18303970 -137326150 + AT_rich Low_complexity Low_complexity 1 32 0 4 724 369 338 88 50 chr4 18304171 18304411 -137325709 + ORR1E LTR MaLR 1 249 -110 4 724 216 79 28 125 chr4 18304603 18304675 -137325445 + T-rich Low_complexity Low_complexity 5 69 0 4 724 1282 325 116 8 chr4 18304943 18305492 -137324628 - Tigger1 DNA MER2_type 0 2418 1811 4 724 2500 162 2 2 chr4 18305492 18305919 -137324201 + Lx2 LINE L1 6571 6997 0 4 724 1282 325 116 8 chr4 18305919 18306032 -137324088 - Tigger1 DNA MER2_type -608 1810 1684 4 724 38954 34 0 0 chr4 18306041 18311454 -137318666 - L1Md_T LINE L1 0 6582 1170 4 724 5553 163 21 27 chr4 18311460 18312569 -137317551 - L1Md_T LINE L1 -5411 1205 104 4 724 528 281 76 31 chr4 18312680 18312904 -137317216 - Lx8 LINE L1 -7 7466 7233 4 724 309 314 38 25 chr4 18312922 18313079 -137317041 - Lx8 LINE L1 -574 6899 6741 4 724 21 0 0 0 chr4 18313146 18313167 -137316953 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 1928 166 3 9 chr4 18313247 18313576 -137316544 + ORR1A2 LTR MaLR 1 327 0 4 724 23 0 0 0 chr4 18313817 18313840 -137316280 + AT_rich Low_complexity Low_complexity 1 23 0 4 724 464 313 122 34 chr4 18313853 18314037 -137316083 + B3A SINE B2 6 203 -13 4 724 210 143 0 0 chr4 18314037 18314072 -137316048 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 724 21 0 0 0 chr4 18315095 18315116 -137315004 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 290 219 89 106 chr4 18315410 18315589 -137314531 + RLTR12A LTR ERVK 392 567 -1 4 724 413 338 26 58 chr4 18315589 18315740 -137314380 - B3A SINE B2 -51 147 2 4 724 27 49 0 0 chr4 18316158 18316199 -137313921 + AT_rich Low_complexity Low_complexity 1 41 0 4 724 5545 143 11 23 chr4 18316421 18317375 -137312745 + Lx3B LINE L1 6029 6970 -3 4 724 227 170 19 19 chr4 18317910 18317964 -137312156 - L1MC LINE L1 -2346 5439 5386 4 724 464 306 175 0 chr4 18317974 18318134 -137311986 - B3 SINE B2 -9 207 20 4 724 551 355 89 13 chr4 18318373 18318755 -137311365 - L1MC LINE L1 -1072 5074 4664 4 724 456 241 30 14 chr4 18318880 18318991 -137311129 + B4 SINE B4 183 292 0 4 724 446 323 109 31 chr4 18319261 18319709 -137310411 - L1MC1 LINE L1 -290 6043 5561 4 724 378 359 8 0 chr4 18320140 18320271 -137309849 - ID_B1 SINE B4 -3 221 90 4 724 519 344 83 77 chr4 18320396 18321273 -137308847 + MLT1B-int LTR MaLR 400 1636 -99 4 724 234 0 0 0 chr4 18321285 18321311 -137308809 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 724 414 0 0 0 chr4 18321311 18321356 -137308764 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 724 309 414 31 26 chr4 18321556 18321707 -137308413 + MLT1B LTR MaLR 191 342 -48 4 724 1758 199 48 55 chr4 18321707 18322092 -137308028 + RMER6C LTR ERVK 3 371 -319 4 724 191 133 22 0 chr4 18322092 18322137 -137307983 + (CAGTT)n Simple_repeat Simple_repeat 2 47 0 4 724 1758 161 16 25 chr4 18322137 18322350 -137307770 + RMER6C LTR ERVK 372 687 -3 4 724 2783 165 41 24 chr4 18322397 18322931 -137307189 + RLTR13D1 LTR ERVK 1 543 -359 4 724 3746 83 28 14 chr4 18322904 18323476 -137306644 + RLTR13D1 LTR ERVK 227 806 0 4 724 4487 253 69 36 chr4 18323695 18323754 -137306366 - Lx6 LINE L1 -486 6974 6894 4 724 675 67 0 0 chr4 18323754 18323843 -137306277 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 724 5214 241 52 27 chr4 18323843 18325317 -137304803 - Lx6 LINE L1 -567 6893 5397 4 724 2707 173 167 24 chr4 18325317 18325975 -137304145 + RMER6A LTR ERVK 1 752 -4 4 724 5214 216 15 10 chr4 18325975 18326656 -137303464 - Lx6 LINE L1 -484 5396 4707 4 724 492 167 65 0 chr4 18326648 18326756 -137303364 - Lx6 LINE L1 -2485 3395 3281 4 724 234 0 0 0 chr4 18327100 18327126 -137302994 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 724 1168 312 24 29 chr4 18327264 18327676 -137302444 + MTD LTR MaLR 10 419 0 4 724 216 0 0 0 chr4 18327766 18327790 -137302330 + (T)n Simple_repeat Simple_repeat 1 24 0 4 724 444 339 61 77 chr4 18328032 18328329 -137301791 + B4 SINE B4 1 292 0 4 724 231 286 205 25 chr4 18329981 18330103 -137300017 - MLT1A0 LTR MaLR -104 261 118 4 724 257 332 96 68 chr4 18330512 18330732 -137299388 - MER67D LTR ERV1 -104 410 185 4 724 610 253 138 10 chr4 18330761 18330957 -137299163 - ID_B1 SINE B4 -1 223 3 4 724 534 16 0 0 chr4 18331085 18331148 -137298972 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 4 724 336 24 0 0 chr4 18331336 18331377 -137298743 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 724 281 302 57 61 chr4 18331396 18331428 -137298692 + L1MA5 LINE L1 6049 6082 -218 4 724 1061 215 9 5 chr4 18331428 18331652 -137298468 - URR1B DNA MER1_type 0 225 1 4 724 281 302 57 61 chr4 18331652 18331866 -137298254 + L1MA5 LINE L1 6083 6294 -6 4 724 231 114 0 0 chr4 18331883 18331918 -137298202 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 724 235 355 98 70 chr4 18332359 18332644 -137297476 + LTR41B LTR ERVL 322 614 -144 4 724 252 86 0 0 chr4 18332722 18332757 -137297363 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 724 264 207 16 49 chr4 18333321 18333382 -137296738 - MTC LTR MaLR -1 373 315 4 724 2658 104 15 2 chr4 18333382 18333777 -137296343 + MTB LTR MaLR 1 400 0 4 724 5219 138 47 81 chr4 18333777 18334810 -137295310 + MTB-int LTR MaLR 1 997 -101 4 724 915 53 0 0 chr4 18334815 18334929 -137295191 + B1_Mus1 SINE Alu 26 139 -9 4 724 301 42 0 41 chr4 18334929 18334978 -137295142 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 724 539 61 18 109 chr4 18334978 18335088 -137295032 + MTB-int LTR MaLR 983 1082 -16 4 724 2775 99 15 2 chr4 18335096 18335491 -137294629 + MTB LTR MaLR 1 400 0 4 724 767 277 66 19 chr4 18335551 18335809 -137294311 - MTC LTR MaLR -148 273 4 4 724 1051 303 39 10 chr4 18336053 18336546 -137293574 - Lx6 LINE L1 -574 6886 6156 4 724 1080 268 50 73 chr4 18336536 18336918 -137293202 + Lx5 LINE L1 6661 7033 -17 4 724 1591 58 0 33 chr4 18337033 18337248 -137292872 + L1_Mus1 LINE L1 6360 6567 0 4 724 416 335 81 52 chr4 18338146 18338357 -137291763 + B4A SINE B4 61 277 -15 4 724 645 14 0 0 chr4 18338370 18338444 -137291676 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 724 510 70 0 0 chr4 18338827 18338898 -137291222 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 724 275 259 56 11 chr4 18338929 18339019 -137291101 + Charlie7 DNA MER1_type 1923 2016 -596 4 724 202 121 30 0 chr4 18339047 18339080 -137291040 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 4 724 1647 32 0 0 chr4 18339124 18339314 -137290806 + B2_Mm1t SINE B2 1 190 -3 4 724 23 0 0 0 chr4 18339323 18339346 -137290774 + AT_rich Low_complexity Low_complexity 1 23 0 4 724 3183 170 37 53 chr4 18339609 18340256 -137289864 + RLTR26 LTR ERVK 6 642 0 4 724 288 102 0 0 chr4 18340266 18340315 -137289805 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 724 262 333 145 45 chr4 18340389 18340568 -137289552 - MLT1C LTR MaLR -148 319 123 4 724 3483 201 88 10 chr4 18340715 18341506 -137288614 + RLTR25B LTR ERVK 1 853 -175 4 724 215 0 67 0 chr4 18341547 18341577 -137288543 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 4 724 3823 132 70 2 chr4 18341584 18342222 -137287898 - Lx2 LINE L1 -6 6991 6310 4 724 2461 122 38 10 chr4 18342226 18342625 -137287495 - Lx2 LINE L1 -923 6074 5665 4 724 1624 169 11 0 chr4 18342626 18342893 -137287227 + L1_Mm LINE L1 5311 5580 -303 4 724 703 239 14 105 chr4 18342976 18343053 -137287067 + RLTR25B LTR ERVK 913 969 -134 4 724 903 105 0 0 chr4 18343053 18343186 -137286934 + (GA)n Simple_repeat Simple_repeat 2 134 0 4 724 703 239 14 105 chr4 18343186 18343318 -137286802 + RLTR25B LTR ERVK 970 1103 0 4 724 399 41 0 0 chr4 18343425 18343474 -137286646 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 724 534 256 81 10 chr4 18344140 18344337 -137285783 - B3 SINE B2 -3 213 3 4 724 191 297 26 26 chr4 18344531 18344607 -137285513 + MIR SINE MIR 116 191 -71 4 724 250 62 60 30 chr4 18344998 18345065 -137285055 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 4 724 7106 68 1 4 chr4 18345272 18346198 -137283922 + L1Md_F2 LINE L1 5654 6576 -6 4 724 661 279 48 30 chr4 18346420 18346690 -137283430 - RMER5 LTR ERV1 -4 530 256 4 724 402 21 0 0 chr4 18347713 18347760 -137282360 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 724 342 0 0 0 chr4 18348143 18348181 -137281939 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 724 1181 250 60 47 chr4 18348414 18348779 -137281341 + ORR1D1 LTR MaLR 5 374 0 4 724 192 40 0 0 chr4 18349109 18349134 -137280986 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 4 90 37919 31 0 0 chr4 18349141 18355570 -137274550 - L1Md_T LINE L1 -12 6573 48 4 725 350 216 60 121 chr4 18355810 18356042 -137274078 - Lx9 LINE L1 -10 7634 7417 4 725 35 41 0 0 chr4 18356586 18356635 -137273485 + AT_rich Low_complexity Low_complexity 1 49 0 4 725 243 0 0 0 chr4 18356816 18356843 -137273277 + (T)n Simple_repeat Simple_repeat 1 27 0 4 725 23 33 0 0 chr4 18357044 18357074 -137273046 + AT_rich Low_complexity Low_complexity 1 30 0 4 725 1867 161 71 61 chr4 18357075 18357471 -137272649 + RLTR9D LTR ERVK 1 400 -3 4 725 2578 281 57 56 chr4 18357473 18358212 -137271908 + ETnERV-int LTR ERVK 4 828 -2486 4 725 183 260 26 52 chr4 18358212 18358289 -137271831 - L2 LINE L2 -2614 805 731 4 725 2578 281 57 56 chr4 18358289 18358783 -137271337 + ETnERV-int LTR ERVK 829 1381 -1933 4 725 1702 269 72 50 chr4 18358782 18359534 -137270586 + ETnERV-int LTR ERVK 1597 2364 -3803 4 725 334 67 0 0 chr4 18359547 18359592 -137270528 - L1_Mm LINE L1 -716 5167 5123 4 725 30986 88 2 12 chr4 18359593 18364768 -137265352 - L1Md_F LINE L1 -477 5406 300 4 725 1152 202 136 26 chr4 18364930 18365240 -137264880 + RMER6A LTR ERVK 1 344 -412 4 725 238 326 20 47 chr4 18365267 18365309 -137264811 - Lx8 LINE L1 -203 7441 7400 4 725 2764 169 121 21 chr4 18365309 18365936 -137264184 - RMER6C LTR ERVK 0 690 1 4 725 261 293 25 15 chr4 18365936 18366041 -137264079 - Lx8 LINE L1 -231 7242 7169 4 725 186 43 0 0 chr4 18366402 18366425 -137263695 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 725 2722 106 0 12 chr4 18367476 18367876 -137262244 - MTA_Mm LTR MaLR -1 395 1 4 725 766 245 50 10 chr4 18367975 18368177 -137261943 - B3 SINE B2 -3 213 4 4 725 484 240 101 31 chr4 18368296 18368455 -137261665 - MTEb LTR MaLR 0 379 210 4 725 733 219 166 0 chr4 18368470 18368639 -137261481 + URR1A DNA MER1_type 1 197 -29 4 725 616 267 177 64 chr4 18368645 18368973 -137261147 + RLTR9A LTR ERVK 4 368 0 4 725 815 149 172 12 chr4 18368987 18369150 -137260970 - URR1A DNA MER1_type -37 189 1 4 725 1332 260 63 24 chr4 18369202 18369753 -137260367 + Lx7 LINE L1 5435 6050 -1594 4 725 2372 201 100 17 chr4 18369840 18370371 -137259749 + RLTR20B3 LTR ERVK 1 575 -2 4 725 264 239 54 11 chr4 18370442 18370535 -137259585 + L1_Mur3 LINE L1 5308 5404 -476 4 725 692 299 5 0 chr4 18370548 18370742 -137259378 + B3 SINE B2 3 197 -19 4 725 2207 257 26 2 chr4 18371861 18372084 -137258036 - RMER13B LTR ERVK 0 908 593 5 725 225 0 0 0 chr4 18372084 18372109 -137258011 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 5 725 2207 148 47 16 chr4 18372109 18372470 -137257650 - RMER13B LTR ERVK -316 592 219 5 725 4644 94 1 9 chr4 18372470 18373116 -137257004 - Lx LINE L1 -416 6238 5598 5 725 1012 120 19 63 chr4 18373116 18373321 -137256799 + Lx LINE L1 6459 6654 0 5 725 1256 190 18 0 chr4 18373330 18373556 -137256564 - RMER13B LTR ERVK -678 230 1 5 725 223 148 36 18 chr4 18374848 18374890 -137255230 + CT-rich Low_complexity Low_complexity 13 56 0 5 725 1317 78 0 0 chr4 18374890 18375069 -137255051 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 725 223 148 36 18 chr4 18375069 18375081 -137255039 + polypyrimidine Low_complexity Low_complexity 1 12 0 5 725 1029 275 54 0 chr4 18376577 18376930 -137253190 + ORR1D1 LTR MaLR 3 374 0 5 725 4552 120 4 16 chr4 18377064 18377970 -137252150 - Lx3B LINE L1 -889 6084 5193 5 725 5680 137 7 1 chr4 18377996 18378878 -137251242 + Lx3B LINE L1 6084 6970 -3 5 725 360 0 0 0 chr4 18380181 18380221 -137249899 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 725 27 0 0 0 chr4 18380235 18380262 -137249858 + AT_rich Low_complexity Low_complexity 1 27 0 5 725 205 75 50 0 chr4 18380336 18380376 -137249744 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 725 21 0 0 0 chr4 18380779 18380800 -137249320 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 1085 305 77 13 chr4 18380805 18381193 -137248927 + Lx8 LINE L1 6958 7370 -103 5 725 24 53 0 0 chr4 18381232 18381270 -137248850 + AT_rich Low_complexity Low_complexity 1 38 0 5 725 1051 175 372 0 chr4 18382431 18382669 -137247451 + RMER6C LTR ERVK 6 332 -358 5 725 1211 173 9 26 chr4 18382829 18383061 -137247059 + RMER6C LTR ERVK 418 645 -45 5 725 586 308 101 65 chr4 18383121 18383637 -137246483 - L1MB3 LINE L1 -216 5967 5430 5 725 303 28 0 0 chr4 18383637 18383673 -137246447 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 725 586 308 101 65 chr4 18383673 18383712 -137246408 - L1MB3 LINE L1 -754 5429 5392 5 725 292 327 45 63 chr4 18383760 18383871 -137246249 - B4 SINE B4 -39 253 145 5 725 569 271 71 13 chr4 18383877 18384042 -137246078 - ORR1C1 LTR MaLR -30 348 174 5 725 1019 58 14 0 chr4 18384042 18384180 -137245940 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 5 725 475 254 32 186 chr4 18384180 18384455 -137245665 - ORR1C1 LTR MaLR -188 182 1 5 725 412 275 108 52 chr4 18384531 18384780 -137245340 - L1MCa LINE L1 -4685 1823 1561 5 725 335 313 0 0 chr4 18384784 18384883 -137245237 - Lx9 LINE L1 -740 6904 6806 5 725 180 0 0 0 chr4 18384932 18384952 -137245168 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 725 248 0 31 0 chr4 18385512 18385544 -137244576 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 725 302 331 59 97 chr4 18385805 18385935 -137244185 + MLT1B LTR MaLR 61 199 -191 5 725 384 22 0 0 chr4 18385935 18385980 -137244140 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 725 302 331 59 97 chr4 18385980 18386190 -137243930 + MLT1B LTR MaLR 200 387 -3 5 725 299 342 32 32 chr4 18386665 18386819 -137243301 + Lx8 LINE L1 7085 7238 -235 5 725 1295 231 57 44 chr4 18386890 18387437 -137242683 - L1_Mur3 LINE L1 -3940 1940 1387 5 725 246 62 0 0 chr4 18387479 18387511 -137242609 + (T)n Simple_repeat Simple_repeat 1 32 0 5 725 1046 182 36 13 chr4 18387549 18387811 -137242309 - RMER17A2 LTR ERVK -1 957 665 5 725 573 55 0 0 chr4 18388161 18388234 -137241886 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 725 22 35 0 0 chr4 18389692 18389721 -137240399 + AT_rich Low_complexity Low_complexity 1 29 0 5 725 267 287 132 0 chr4 18390550 18390679 -137239441 + MIRb SINE MIR 115 260 -8 5 725 204 40 0 0 chr4 18390725 18390750 -137239370 + (T)n Simple_repeat Simple_repeat 1 25 0 5 725 236 344 81 37 chr4 18390776 18390912 -137239208 - L2 LINE L2 -575 2844 2703 5 725 1295 204 116 24 chr4 18391536 18391872 -137238248 - ORR1B2 LTR MaLR 0 367 1 5 725 268 42 83 0 chr4 18393242 18393290 -137236830 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 5 725 378 0 0 0 chr4 18393457 18393499 -137236621 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 725 463 313 93 37 chr4 18394578 18394847 -137235273 + B4 SINE B4 2 285 -7 5 725 472 350 59 36 chr4 18394928 18395174 -137234946 - MER76 LTR ERVL -334 357 105 5 725 6251 62 23 0 chr4 18395174 18395964 -137234156 + RLTR13C2 LTR ERVK 1 808 0 5 725 472 350 59 36 chr4 18395964 18396022 -137234098 - MER76 LTR ERVL -587 104 46 5 725 370 257 0 0 chr4 18396896 18396976 -137233144 + B3A SINE B2 8 87 -129 5 725 218 200 0 0 chr4 18397232 18397282 -137232838 + A-rich Low_complexity Low_complexity 1 50 0 5 725 1969 325 38 47 chr4 18397359 18398403 -137231717 + Lx9 LINE L1 6422 7456 -188 5 725 186 103 0 0 chr4 18398403 18398432 -137231688 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 725 21 36 0 0 chr4 18398611 18398639 -137231481 + AT_rich Low_complexity Low_complexity 1 28 0 5 725 315 146 0 0 chr4 18398678 18398733 -137231387 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 725 4227 157 32 3 chr4 18400533 18401249 -137228871 + RMER19A LTR ERVK 1 737 0 5 725 2145 96 3 75 chr4 18401461 18401822 -137228298 - IAPLTR1a_Mm LTR ERVK -2 335 1 5 725 54896 14 7 0 chr4 18401822 18408253 -137221867 - IAPEz-int LTR ERVK 0 6481 6 5 725 2139 94 3 75 chr4 18408253 18408611 -137221509 - IAPLTR1a_Mm LTR ERVK -5 332 1 5 725 7472 158 25 12 chr4 18409613 18411327 -137218793 - Lx2 LINE L1 0 6997 5259 5 725 387 0 0 0 chr4 18411451 18411494 -137218626 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 725 212 279 16 0 chr4 18411738 18411799 -137218321 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 5 725 233 160 0 20 chr4 18412617 18412668 -137217452 + T-rich Low_complexity Low_complexity 2 51 0 5 725 4912 133 12 4 chr4 18412857 18413684 -137216436 - Lx3_Mus LINE L1 -8 7001 6168 5 725 8745 158 141 10 chr4 18413670 18415168 -137214952 - Lx2B LINE L1 -616 6384 4816 5 725 372 43 0 0 chr4 18415168 18415214 -137214906 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 725 8745 179 154 12 chr4 18415214 18416422 -137213698 - Lx2B LINE L1 -1071 4815 3329 5 725 2436 202 26 13 chr4 18416413 18417193 -137212927 - L1VL4 LINE L1 -2507 1052 261 5 725 651 336 17 21 chr4 18417520 18417754 -137212366 - B4A SINE B4 0 292 60 5 725 350 176 67 22 chr4 18417886 18418020 -137212100 + (TCTA)n Simple_repeat Simple_repeat 1 140 0 5 725 906 110 29 8 chr4 18418065 18418304 -137211816 + (TCTA)n Simple_repeat Simple_repeat 1 244 0 5 725 1641 194 83 5 chr4 18419235 18419609 -137210511 + L1Md_F LINE L1 392 794 -5822 5 725 6530 80 2 2 chr4 18419609 18420515 -137209605 + L1Md_F2 LINE L1 5690 6582 0 5 725 4134 91 2 0 chr4 18420660 18421277 -137208843 + L1Md_F LINE L1 3141 3758 -2125 5 725 33252 50 0 3 chr4 18421272 18426502 -137203618 + L1Md_F2 LINE L1 277 5589 -297 5 725 7356 79 2 2 chr4 18426502 18427511 -137202609 + L1Md_F2 LINE L1 5590 6585 0 5 725 703 256 20 10 chr4 18427642 18427843 -137202277 - Lx6 LINE L1 -4 7456 7254 5 725 662 55 11 0 chr4 18428270 18428361 -137201759 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 5 725 21 71 0 0 chr4 18429069 18429111 -137201009 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 306 50 0 0 chr4 18430489 18430529 -137199591 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 5 725 1117 75 7 0 chr4 18430532 18430678 -137199442 - B1_Mus1 SINE Alu 0 148 2 5 725 295 236 233 10 chr4 18430743 18430936 -137199184 - Lx9 LINE L1 -22 7622 7387 5 725 2178 155 41 33 chr4 18432057 18432451 -137197669 + Lx2 LINE L1 6601 6997 0 5 725 291 343 0 108 chr4 18432469 18432580 -137197540 - MTEa LTR MaLR -229 150 52 5 725 214 216 37 0 chr4 18432635 18432688 -137197432 - L2b LINE L2 -7 3380 3324 5 725 24 0 0 0 chr4 18432925 18432949 -137197171 + AT_rich Low_complexity Low_complexity 1 24 0 5 725 252 226 0 31 chr4 18433082 18433146 -137196974 + GA-rich Low_complexity Low_complexity 4 65 0 5 725 21 36 0 0 chr4 18434150 18434178 -137195942 + AT_rich Low_complexity Low_complexity 1 28 0 5 725 22 88 0 0 chr4 18434189 18434246 -137195874 + AT_rich Low_complexity Low_complexity 1 57 0 5 725 1513 275 5 11 chr4 18434320 18434695 -137195425 - ORR1D1 LTR MaLR -1 373 1 5 725 490 236 66 0 chr4 18434894 18435000 -137195120 - B3A SINE B2 -82 116 4 5 725 231 258 70 70 chr4 18435408 18435608 -137194512 + L1P5 LINE L1 5400 5599 -557 5 725 327 49 0 0 chr4 18435802 18435843 -137194277 + (TTA)n Simple_repeat Simple_repeat 1 41 0 5 725 5757 129 16 36 chr4 18435845 18436832 -137193288 - Lx2A LINE L1 -17 6991 6025 5 725 2936 184 60 107 chr4 18437765 18438521 -137191599 - RMER6D LTR ERVK 0 720 1 5 725 246 306 10 0 chr4 18438547 18438645 -137191475 + L1M2 LINE L1 5690 5788 -512 5 725 2282 70 13 0 chr4 18439317 18439618 -137190502 + L1_Mus1 LINE L1 6263 6567 0 5 725 609 123 0 0 chr4 18439643 18439749 -137190371 + (CA)n Simple_repeat Simple_repeat 2 107 0 5 725 35 24 0 0 chr4 18439755 18439797 -137190323 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 29806 30 11 17 chr4 18440121 18441770 -137188350 - L1Md_A LINE L1 -1 6581 4928 5 725 237 167 46 77 chr4 18441770 18441835 -137188285 + RMER20A LTR ERVK 186 248 -268 5 725 29806 30 11 17 chr4 18441835 18446283 -137183837 - L1Md_A LINE L1 -1 4927 462 5 725 315 224 45 27 chr4 18446710 18446820 -137183300 + L1M5 LINE L1 3493 3604 -2542 5 725 360 0 0 0 chr4 18447052 18447092 -137183028 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 725 3052 181 92 13 chr4 18447245 18447873 -137182247 - RLTR33 LTR ERVK 0 678 1 5 725 26 30 0 0 chr4 18448306 18448339 -137181781 + AT_rich Low_complexity Low_complexity 1 33 0 5 725 221 277 0 0 chr4 18449048 18449113 -137181007 + CT-rich Low_complexity Low_complexity 2 66 0 5 725 504 72 0 0 chr4 18449114 18449183 -137180937 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 725 9464 60 37 0 chr4 18449490 18451395 -137178725 - L1Md_F2 LINE L1 -1 6581 4626 5 725 21 36 0 0 chr4 18451945 18451973 -137178147 + AT_rich Low_complexity Low_complexity 1 28 0 5 725 235 209 0 0 chr4 18452151 18452194 -137177926 + CT-rich Low_complexity Low_complexity 3 45 0 5 725 1454 236 149 17 chr4 18452641 18453111 -137177009 - RMER5 LTR ERV1 0 534 3 5 725 195 288 33 17 chr4 18453599 18453659 -137176461 + L2 LINE L2 1474 1534 -1885 5 725 186 43 0 0 chr4 18453735 18453758 -137176362 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 725 23 0 0 0 chr4 18454100 18454123 -137175997 + AT_rich Low_complexity Low_complexity 1 23 0 6 725 2212 148 7 31 chr4 18454237 18454656 -137175464 - RLTR9E LTR ERVK 0 409 1 6 725 290 54 0 0 chr4 18454786 18454823 -137175297 - tRNA-Leu-TTG tRNA tRNA -48 38 2 6 725 270 0 0 0 chr4 18455486 18455516 -137174604 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 725 264 351 71 9 chr4 18457394 18457506 -137172614 + LTR16A LTR ERVL 333 451 0 6 725 21 36 0 0 chr4 18457700 18457728 -137172392 + AT_rich Low_complexity Low_complexity 1 28 0 6 725 489 34 0 0 chr4 18457758 18457817 -137172303 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 725 378 57 0 0 chr4 18457818 18457871 -137172249 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 725 385 280 50 25 chr4 18457953 18458074 -137172046 + RLTR18B LTR ERVK 1 124 -388 6 725 8029 158 14 11 chr4 18458427 18460128 -137169992 - Lx2 LINE L1 0 6997 5288 6 725 7238 133 1 5 chr4 18460122 18461275 -137168845 - Lx LINE L1 0 6654 5509 6 725 17043 194 29 9 chr4 18461274 18463004 -137167116 - Lx LINE L1 -657 5229 3473 6 725 6998 39 0 0 chr4 18463004 18463836 -137166284 - L1Md_T LINE L1 0 6582 5751 6 725 17043 194 29 9 chr4 18463836 18464163 -137165957 - Lx LINE L1 -2414 3472 3137 6 725 303 85 0 0 chr4 18464163 18464210 -137165910 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 725 17043 194 29 9 chr4 18464210 18465841 -137164279 - Lx LINE L1 -2750 3136 1472 6 725 663 266 14 0 chr4 18465906 18466045 -137164075 - RSINE1 SINE B4 -22 143 3 6 725 488 16 16 0 chr4 18466188 18466249 -137163871 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 725 3169 87 21 11 chr4 18466316 18466783 -137163337 - Lx3_Mus LINE L1 0 7009 6538 6 725 1016 323 43 18 chr4 18466848 18467286 -137162834 + Lx8 LINE L1 6248 6696 -777 6 725 931 299 106 14 chr4 18467599 18468377 -137161743 - Lx7 LINE L1 -1645 5999 5112 6 725 248 210 120 74 chr4 18468390 18468498 -137161622 - RLTR12B LTR ERVK -12 516 404 6 725 576 241 25 19 chr4 18468468 18468629 -137161491 - RLTR12B LTR ERVK -331 197 36 6 725 3708 103 56 2 chr4 18468722 18469276 -137160844 + MT2B2 LTR ERVL 1 584 0 6 725 239 104 0 20 chr4 18469372 18469421 -137160699 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 725 255 154 0 0 chr4 18469602 18469667 -137160453 + T-rich Low_complexity Low_complexity 1 65 0 6 725 1393 197 11 41 chr4 18470951 18471195 -137158925 + ORR1B1 LTR MaLR 1 275 -119 6 725 2946 61 200 9 chr4 18471195 18471625 -137158495 - RLTR1B LTR ERV1 0 512 1 6 725 1393 213 16 41 chr4 18471625 18471702 -137158418 + ORR1B1 LTR MaLR 276 347 -47 6 725 559 201 21 8 chr4 18471734 18471866 -137158254 + MT2A LTR ERVL 62 316 -177 6 725 985 275 137 58 chr4 18471866 18471907 -137158213 - RMER19B LTR ERVK 0 902 859 6 725 782 142 0 33 chr4 18471907 18472060 -137158060 - Lx LINE L1 0 6654 6507 6 725 985 284 143 56 chr4 18472060 18472533 -137157587 - RMER19B LTR ERVK -44 858 178 6 725 3733 102 2 0 chr4 18472533 18473044 -137157076 + L1_Mm LINE L1 5348 5859 -24 6 725 1381 188 13 52 chr4 18474427 18474735 -137155385 + L1_Mur3 LINE L1 5478 5773 -107 6 725 815 289 60 20 chr4 18474755 18475006 -137155114 + Lx6 LINE L1 7173 7433 -27 6 725 4125 46 0 0 chr4 18475081 18475622 -137154498 + L1Md_F3 LINE L1 6069 6584 0 6 725 306 107 0 0 chr4 18475837 18475893 -137154227 + (TATG)n Simple_repeat Simple_repeat 2 57 0 6 725 890 217 91 22 chr4 18475893 18476124 -137153996 - Lx4B LINE L1 -28 7030 6784 6 725 1733 214 25 8 chr4 18476121 18476708 -137153412 - L1_Mur2 LINE L1 -4360 1517 915 6 725 29 28 0 0 chr4 18477084 18477120 -137153000 + AT_rich Low_complexity Low_complexity 1 36 0 6 725 254 73 0 24 chr4 18477301 18477343 -137152777 + (TTA)n Simple_repeat Simple_repeat 3 43 0 6 725 989 32 8 0 chr4 18477993 18478118 -137152002 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 6 725 33 43 0 0 chr4 18478875 18478922 -137151198 + AT_rich Low_complexity Low_complexity 1 47 0 6 725 762 62 0 0 chr4 18478942 18479038 -137151082 + Lx3_Mus LINE L1 6562 6657 -352 6 725 2795 92 35 2 chr4 18479040 18479443 -137150677 - Lx3_Mus LINE L1 -32 6977 6562 6 725 250 62 62 0 chr4 18479613 18479661 -137150459 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 725 230 353 94 0 chr4 18480062 18480147 -137149973 - MLT1A0 LTR MaLR -71 294 202 6 725 723 239 24 19 chr4 18480175 18480384 -137149736 + Lx7 LINE L1 7487 7696 0 6 725 1210 83 0 16 chr4 18480458 18480641 -137149479 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 725 953 113 28 16 chr4 18480645 18480975 -137149145 + GA-rich Low_complexity Low_complexity 1 334 0 6 90 2156 109 12 58 chr4 18480987 18481329 -137148791 - ORR1A2 LTR MaLR -1 326 1 6 726 213 213 0 0 chr4 18481431 18481478 -137148642 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 726 21 36 0 0 chr4 18481978 18482006 -137148114 + AT_rich Low_complexity Low_complexity 1 28 0 6 726 1087 147 99 0 chr4 18483145 18483336 -137146784 - URR1A DNA MER1_type 0 226 17 6 726 558 222 111 0 chr4 18483563 18483689 -137146431 - B1_Mus1 SINE Alu -2 146 7 6 726 21 57 0 0 chr4 18483840 18483875 -137146245 + AT_rich Low_complexity Low_complexity 1 35 0 6 726 32958 77 20 8 chr4 18484137 18487549 -137142571 - L1Md_F2 LINE L1 -12 6570 3082 6 726 1894 118 137 52 chr4 18487549 18487987 -137142133 + IAPLTR2_Mm LTR ERVK 1 475 0 6 726 32958 78 22 11 chr4 18487987 18490002 -137140118 - L1Md_F2 LINE L1 -2802 3081 1114 6 726 3343 32 80 48 chr4 18490002 18490462 -137139658 + IAPLTR2_Mm LTR ERVK 1 475 0 6 726 2014 103 2 123 chr4 18490462 18490582 -137139538 - L1Md_F2 LINE L1 -5611 1113 994 6 726 291 54 0 0 chr4 18490752 18490789 -137139331 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 726 713 245 20 206 chr4 18491132 18491326 -137138794 + B3 SINE B2 32 212 -4 6 726 276 143 43 0 chr4 18491580 18491650 -137138470 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 726 231 283 33 0 chr4 18491692 18491752 -137138368 - ID_B1 SINE B4 -4 220 159 6 726 532 301 86 10 chr4 18491753 18491951 -137138169 - ID_B1 SINE B4 -11 213 1 6 726 4101 198 7 11 chr4 18492005 18492818 -137137302 - Lx2 LINE L1 -2 6995 6186 6 726 6021 35 0 0 chr4 18492830 18493545 -137136575 - L1Md_A LINE L1 -12 6570 5856 6 726 243 0 0 0 chr4 18493699 18493726 -137136394 + (T)n Simple_repeat Simple_repeat 1 27 0 6 726 1205 312 70 15 chr4 18494205 18494732 -137135388 + LTR80B LTR ERVL 25 580 -4 6 726 249 245 30 20 chr4 18495600 18495700 -137134420 + Lx9 LINE L1 7538 7638 -6 6 726 206 277 0 0 chr4 18495997 18496044 -137134076 + CT-rich Low_complexity Low_complexity 2 48 0 6 726 22 35 0 0 chr4 18496577 18496606 -137133514 + AT_rich Low_complexity Low_complexity 1 29 0 6 726 486 174 9 9 chr4 18496690 18496800 -137133320 - Lx3_Mus LINE L1 0 7009 6900 6 726 1982 187 84 34 chr4 18497291 18497729 -137132391 + Lx5 LINE L1 6276 6735 -315 6 726 1066 7 97 21 chr4 18497827 18497971 -137132149 + L1Md_F2 LINE L1 6416 6570 -12 6 726 327 331 38 38 chr4 18498056 18498188 -137131932 - MLT1E2 LTR MaLR 0 627 496 6 726 319 376 89 30 chr4 18498281 18498517 -137131603 - MLT1E2 LTR MaLR 0 467 218 6 726 1261 247 70 13 chr4 18498758 18499074 -137131046 - ORR1C1 LTR MaLR -2 376 43 6 726 192 353 52 20 chr4 18499401 18499554 -137130566 - L3 LINE CR1 -63 4426 4269 6 726 457 278 71 47 chr4 18499830 18500000 -137130120 + MLT1C LTR MaLR 290 463 -4 6 726 2786 88 5 3 chr4 18500240 18500628 -137129492 + L1_Mus3 LINE L1 6249 6637 -1 1 726 198 311 126 80 chr4 18500890 18501065 -137129055 - L3 LINE CR1 -782 3707 3525 2 726 571 314 14 47 chr4 18501542 18501756 -137128364 - Lx6 LINE L1 -64 7396 7190 3 726 35 63 0 0 chr4 18502193 18502256 -137127864 + AT_rich Low_complexity Low_complexity 1 63 0 4 726 313 209 53 44 chr4 18502427 18502582 -137127538 + RLTR13D3 LTR ERVK 990 1067 -47 5 726 388 323 52 8 chr4 18502582 18502716 -137127404 - Lx5 LINE L1 -269 6781 6642 6 726 379 275 98 15 chr4 18503342 18503475 -137126645 + B1_Mus1 SINE Alu 5 148 0 7 726 486 120 0 0 chr4 18505652 18505727 -137124393 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 726 408 361 7 62 chr4 18506600 18506904 -137123216 - B4 SINE B4 -1 291 5 9 726 1035 88 0 0 chr4 18507160 18507297 -137122823 + B1_Mus1 SINE Alu 2 138 -10 1 726 1225 90 0 0 chr4 18507297 18507475 -137122645 + L1_Mus2 LINE L1 6389 6566 0 1 726 1897 154 55 17 chr4 18507595 18508037 -137122083 + L1_Mus3 LINE L1 6096 6618 -20 1 726 815 238 53 49 chr4 18509212 18509455 -137120665 + Lx6 LINE L1 6644 6887 -573 1 726 815 204 40 100 chr4 18509457 18509672 -137120448 + Lx6 LINE L1 7047 7250 -210 1 726 2672 77 3 0 chr4 18509672 18510025 -137120095 + L1_Mus1 LINE L1 6214 6567 0 1 726 413 187 41 132 chr4 18510025 18510065 -137120055 + Lx6 LINE L1 7511 7547 -149 1 726 402 120 36 12 chr4 18510076 18510160 -137119960 + (TGAA)n Simple_repeat Simple_repeat 3 88 0 1 726 266 50 25 0 chr4 18510321 18510361 -137119759 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 726 25 51 0 0 chr4 18510433 18510472 -137119648 + AT_rich Low_complexity Low_complexity 1 39 0 1 726 252 331 75 27 chr4 18511430 18511576 -137118544 + LTR40a LTR ERVL 138 290 -229 1 726 1491 189 157 0 chr4 18512203 18512521 -137117599 - RMER17B LTR ERVK -4 954 587 1 726 1208 207 47 0 chr4 18512521 18512796 -137117324 + Lx2B LINE L1 5849 6136 -864 2 726 629 259 0 7 chr4 18513045 18513193 -137116927 - B1_Mur4 SINE Alu -2 148 2 2 726 212 250 21 0 chr4 18513463 18513511 -137116609 - L2c LINE L2 -227 3160 3112 2 726 2730 82 46 5 chr4 18513989 18514379 -137115741 + L1_Mus2 LINE L1 6161 6566 0 2 726 437 224 16 52 chr4 18515502 18515766 -137114354 + MYSERV6-int LTR ERVK 7828 7996 -963 2 726 11525 167 32 15 chr4 18515766 18516819 -137113301 + L1_Mm LINE L1 3332 4389 -1494 2 726 4267 40 2 8 chr4 18516819 18517347 -137112773 + L1Md_F2 LINE L1 6058 6582 0 2 726 11525 167 32 15 chr4 18517347 18517589 -137112531 + L1_Mm LINE L1 4390 4627 -1256 2 726 189 74 0 0 chr4 18517589 18517616 -137112504 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 726 11525 167 32 15 chr4 18517616 18518535 -137111585 + L1_Mm LINE L1 4628 5583 -300 2 726 1620 321 88 36 chr4 18518559 18518658 -137111462 + Lx8 LINE L1 6189 6300 -1173 2 726 1118 62 0 14 chr4 18518658 18518805 -137111315 + B1_Mus2 SINE Alu 2 146 -1 2 726 1620 321 88 36 chr4 18518805 18519147 -137110973 + Lx8 LINE L1 6301 6670 -803 2 726 252 0 0 0 chr4 18519147 18519175 -137110945 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 726 1620 321 88 36 chr4 18519175 18519614 -137110506 + Lx8 LINE L1 6671 7115 -358 2 726 25 0 0 0 chr4 18520869 18520894 -137109226 + AT_rich Low_complexity Low_complexity 1 25 0 3 726 25 75 0 0 chr4 18521357 18521410 -137108710 + AT_rich Low_complexity Low_complexity 1 53 0 3 726 689 300 20 0 chr4 18522230 18522430 -137107690 + B3 SINE B2 3 206 -10 3 726 234 0 0 0 chr4 18523493 18523519 -137106601 + (A)n Simple_repeat Simple_repeat 1 26 0 3 726 210 71 0 0 chr4 18523842 18523870 -137106250 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 726 25 31 0 0 chr4 18525163 18525195 -137104925 + AT_rich Low_complexity Low_complexity 1 32 0 3 726 3152 67 2 0 chr4 18525199 18525605 -137104515 - L1_Mus1 LINE L1 -2 6565 6159 3 726 4430 71 12 0 chr4 18525605 18526350 -137103770 + L1_Mus1 LINE L1 5418 6171 -396 3 726 23 33 0 0 chr4 18526482 18526512 -137103608 + AT_rich Low_complexity Low_complexity 1 30 0 3 726 22 35 0 0 chr4 18526928 18526957 -137103163 + AT_rich Low_complexity Low_complexity 1 29 0 3 726 817 147 12 0 chr4 18527118 18527288 -137102832 + CT-rich Low_complexity Low_complexity 3 174 0 4 726 41 21 0 0 chr4 18528106 18528154 -137101966 + AT_rich Low_complexity Low_complexity 1 48 0 4 726 345 262 74 59 chr4 18528872 18529075 -137101045 - Lx7 LINE L1 -16 7680 7475 4 726 391 42 0 0 chr4 18529075 18529123 -137100997 + (CAA)n Simple_repeat Simple_repeat 1 48 0 4 726 582 177 0 0 chr4 18529125 18529283 -137100837 + GA-rich Low_complexity Low_complexity 2 159 0 4 726 419 0 0 19 chr4 18529322 18529374 -137100746 + (TAA)n Simple_repeat Simple_repeat 3 53 0 4 726 435 243 244 17 chr4 18529848 18530028 -137100092 - Lx7 LINE L1 -332 7364 7144 4 726 792 240 16 32 chr4 18530029 18530218 -137099902 - Lx7 LINE L1 -939 6757 6572 4 726 6981 86 45 8 chr4 18530218 18531214 -137098906 + MERVK26-int LTR ERVK 3392 4424 -2495 4 726 2130 256 136 2 chr4 18531215 18532371 -137097749 - Lx7 LINE L1 -1124 6572 5262 4 726 1822 224 57 29 chr4 18532361 18532610 -137097510 - Lx2B LINE L1 0 7000 6762 4 726 267 31 0 0 chr4 18532610 18532642 -137097478 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 726 1822 224 57 29 chr4 18532642 18532846 -137097274 - Lx2B LINE L1 -239 6761 6535 4 726 2011 234 127 15 chr4 18532854 18533995 -137096125 - Lx7 LINE L1 -614 5266 3854 4 726 35322 36 1 0 chr4 18533993 18539875 -137090245 + L1Md_T LINE L1 1 5589 -297 4 726 8973 6 0 0 chr4 18539875 18540871 -137089249 + L1Md_T LINE L1 5590 6585 0 4 726 216 0 0 0 chr4 18540895 18540919 -137089201 + (A)n Simple_repeat Simple_repeat 1 24 0 5 726 1316 196 57 9 chr4 18540919 18541253 -137088867 - Lx7 LINE L1 -2009 3871 3522 4 726 202 160 20 20 chr4 18541253 18541304 -137088816 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 726 32 43 0 0 chr4 18541481 18541527 -137088593 + AT_rich Low_complexity Low_complexity 1 46 0 5 726 31 92 0 0 chr4 18542300 18542387 -137087733 + AT_rich Low_complexity Low_complexity 1 87 0 5 726 719 137 8 0 chr4 18542512 18542636 -137087484 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 5 726 446 329 109 29 chr4 18545424 18545599 -137084521 + MTEa LTR MaLR 56 244 -135 5 726 2075 314 122 36 chr4 18546260 18547027 -137083093 + MTEb-int LTR MaLR 14 845 -735 5 726 1541 56 0 5 chr4 18547027 18547223 -137082897 + B2_Mm2 SINE B2 1 195 0 5 726 2075 314 122 36 chr4 18547223 18547416 -137082704 + MTEb-int LTR MaLR 846 1056 -524 5 726 4128 166 62 13 chr4 18547502 18548505 -137081615 - Lx4B LINE L1 -681 6377 5295 5 726 3043 204 79 5 chr4 18548503 18549113 -137081007 + Lx4B LINE L1 6393 7047 -11 5 726 3873 163 30 19 chr4 18549429 18550173 -137079947 + RMER6A LTR ERVK 3 754 -2 5 726 896 314 63 100 chr4 18550442 18550980 -137079140 + MTEb-int LTR MaLR 1053 1570 -10 5 726 207 88 0 0 chr4 18550980 18551014 -137079106 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 6 726 1174 276 51 54 chr4 18551014 18551385 -137078735 + MTEb LTR MaLR 1 370 -9 5 726 2162 89 6 58 chr4 18551392 18551736 -137078384 + MTB_Mm LTR MaLR 1 326 -81 6 726 1946 58 96 0 chr4 18551736 18551996 -137078124 - L1Md_F2 LINE L1 -330 6252 5968 6 726 2227 60 63 7 chr4 18551996 18552298 -137077822 + L1Md_F2 LINE L1 6252 6570 -12 6 726 374 145 250 0 chr4 18552301 18552377 -137077743 + MTB_Mm LTR MaLR 311 405 -2 6 726 1161 152 15 112 chr4 18553498 18553545 -137076575 - RMER19C LTR ERVK -12 599 565 6 726 309 51 0 0 chr4 18553545 18553584 -137076536 + (CAT)n Simple_repeat Simple_repeat 2 40 0 6 726 1161 152 15 112 chr4 18553584 18553600 -137076520 - RMER19C LTR ERVK -47 564 556 6 726 639 136 35 21 chr4 18553600 18553743 -137076377 - Lx3B LINE L1 0 6973 6829 6 726 1161 174 34 74 chr4 18553743 18554181 -137075939 - RMER19C LTR ERVK -56 555 2 6 726 256 34 50 33 chr4 18554872 18554932 -137075188 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 6 726 21 36 0 0 chr4 18555194 18555222 -137074898 + AT_rich Low_complexity Low_complexity 1 28 0 6 726 992 291 53 67 chr4 18555403 18555778 -137074342 - MTEa LTR MaLR -7 372 3 6 726 266 273 34 11 chr4 18555992 18556081 -137074039 - ORR1D2 LTR MaLR 0 370 280 6 726 2152 66 3 10 chr4 18556362 18556652 -137073468 - L1Md_F2 LINE L1 -1 6581 6294 7 726 908 283 80 0 chr4 18556652 18556889 -137073231 - MTD LTR MaLR -25 394 139 7 726 552 42 0 0 chr4 18557563 18557634 -137072486 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 7 726 376 384 29 29 chr4 18558125 18558399 -137071721 - L1M2 LINE L1 -1194 4949 4676 7 726 2143 176 15 185 chr4 18558419 18558972 -137071148 - RMER6C LTR ERVK -64 626 199 7 726 5987 134 23 6 chr4 18558972 18559935 -137070185 - Lx3C LINE L1 -2 6974 5996 7 726 2143 176 15 185 chr4 18559935 18560136 -137069984 - RMER6C LTR ERVK -492 198 1 7 726 345 294 62 7 chr4 18560140 18560284 -137069836 - L1M2 LINE L1 -1544 4599 4448 7 726 385 331 61 15 chr4 18560491 18560755 -137069365 - L1_Rod LINE L1 -1804 4043 3768 7 726 497 212 37 110 chr4 18560841 18561005 -137069115 - RSINE1 SINE B4 0 165 14 7 726 582 282 71 14 chr4 18561015 18561310 -137068810 - L1M2 LINE L1 -2357 3786 3475 7 726 866 296 32 16 chr4 18561367 18561614 -137068506 - MTE2b LTR MaLR -2 377 127 7 726 263 305 73 21 chr4 18561636 18561850 -137068270 - L1_Mur3 LINE L1 -2830 3050 2826 7 726 300 53 0 0 chr4 18561884 18561922 -137068198 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 726 267 31 0 0 chr4 18561922 18561954 -137068166 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 726 595 321 66 20 chr4 18561988 18562382 -137067738 - L1_Mur3 LINE L1 -3191 2689 2278 7 726 34 24 0 0 chr4 18562418 18562459 -137067661 + AT_rich Low_complexity Low_complexity 1 41 0 8 726 1875 236 65 7 chr4 18562459 18562908 -137067212 - Lx2B LINE L1 -23 6977 6503 8 726 11864 169 57 5 chr4 18562909 18565266 -137064854 - L1_Mur2 LINE L1 -8 5869 3389 8 726 2514 192 6 6 chr4 18565297 18565779 -137064341 - L1_Mur2 LINE L1 -324 5553 5072 8 726 6290 187 61 23 chr4 18565777 18566787 -137063333 + L1_Mur2 LINE L1 3564 4621 -1256 8 726 210 91 0 0 chr4 18566787 18566820 -137063300 + (CAA)n Simple_repeat Simple_repeat 2 34 0 8 726 6290 187 61 23 chr4 18566820 18567250 -137062870 + L1_Mur2 LINE L1 4622 5058 -819 8 726 5300 192 54 10 chr4 18567245 18568490 -137061630 - MusHAL1 LINE L1 -504 2208 907 8 726 4960 69 15 1 chr4 18568490 18569143 -137060977 - L1_Mus1 LINE L1 -2 6565 5904 8 726 5300 192 54 10 chr4 18569143 18569178 -137060942 - MusHAL1 LINE L1 -1806 906 872 8 726 297 68 0 0 chr4 18569195 18569239 -137060881 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 726 483 126 0 0 chr4 18569239 18569334 -137060786 + (GA)n Simple_repeat Simple_repeat 2 96 0 9 726 284 67 0 0 chr4 18569345 18569390 -137060730 - L1_Mur2 LINE L1 -3870 2007 1963 9 726 411 21 0 0 chr4 18569558 18569606 -137060514 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 726 2576 175 143 39 chr4 18569722 18570149 -137059971 - RMER6C LTR ERVK -18 702 322 9 726 662 0 13 0 chr4 18570149 18570227 -137059893 + (TC)n Simple_repeat Simple_repeat 1 79 0 9 726 2576 162 161 18 chr4 18570227 18570548 -137059572 - RMER6C LTR ERVK -317 373 3 9 726 333 0 0 0 chr4 18570632 18570669 -137059451 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 726 27 62 0 0 chr4 18571021 18571069 -137059051 + AT_rich Low_complexity Low_complexity 1 48 0 9 726 26 88 0 0 chr4 18571291 18571359 -137058761 + AT_rich Low_complexity Low_complexity 1 68 0 9 726 236 145 0 61 chr4 18572929 18572995 -137057125 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 9 726 570 203 122 0 chr4 18572995 18573118 -137057002 - Lx5 LINE L1 -471 6579 6442 1 726 390 224 7 15 chr4 18574058 18574194 -137055926 - Lx9 LINE L1 -1 7643 7509 1 726 213 108 0 0 chr4 18574816 18574853 -137055267 + (A)n Simple_repeat Simple_repeat 1 37 0 1 726 2116 67 0 0 chr4 18575120 18575390 -137054730 - L1_Mus1 LINE L1 0 6567 6298 1 726 242 298 64 69 chr4 18576926 18577099 -137053021 - MIR SINE MIR -21 241 70 1 726 786 305 38 28 chr4 18577970 18578257 -137051863 + B4A SINE B4 1 290 -2 1 726 277 75 38 0 chr4 18578278 18578331 -137051789 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 726 278 0 54 0 chr4 18578910 18578947 -137051173 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 1 726 192 150 0 0 chr4 18579241 18579269 -137050851 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 726 192 40 0 0 chr4 18579269 18579294 -137050826 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 726 192 150 0 0 chr4 18579294 18579305 -137050815 + (TA)n Simple_repeat Simple_repeat 1 11 0 1 726 1244 367 60 19 chr4 18579995 18580085 -137050035 + Lx8 LINE L1 6535 6624 -849 1 726 180 77 0 0 chr4 18580085 18580111 -137050009 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 726 1244 367 60 19 chr4 18580111 18580740 -137049380 + Lx8 LINE L1 6625 7282 -191 1 726 431 236 84 14 chr4 18580777 18580919 -137049201 - MTC-int LTR MaLR -5 1253 1102 1 726 1165 190 60 0 chr4 18580922 18581154 -137048966 - Lx5 LINE L1 -490 6560 6315 1 726 1831 246 7 12 chr4 18581163 18581566 -137048554 + Lx5 LINE L1 6647 7047 -3 1 726 624 27 0 0 chr4 18581566 18581640 -137048480 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 1 726 292 198 141 11 chr4 18581640 18581732 -137048388 - MTC-int LTR MaLR -147 1111 1008 1 726 214 215 0 58 chr4 18581767 18581836 -137048284 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 1 726 561 120 0 0 chr4 18582463 18582555 -137047565 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 726 4468 99 3 14 chr4 18582682 18582947 -137047173 + RLTR13D2 LTR ERVK 1 266 -757 1 726 3738 138 82 51 chr4 18582947 18583732 -137046388 + RMER17D2 LTR ERVK 1 809 0 1 726 4468 99 3 14 chr4 18583732 18584100 -137046020 + RLTR13D2 LTR ERVK 267 627 -396 1 726 7568 73 6 49 chr4 18584100 18584693 -137045427 + L1Md_F2 LINE L1 4529 5097 -786 1 726 3754 35 11 0 chr4 18584693 18585147 -137044973 + L1Md_F3 LINE L1 6126 6584 0 1 726 7568 73 6 49 chr4 18585147 18585658 -137044462 + L1Md_F2 LINE L1 5098 5586 -297 1 726 5310 114 59 47 chr4 18585659 18586642 -137043478 + L1Md_F2 LINE L1 5588 6582 0 1 726 2608 116 35 8 chr4 18586642 18587043 -137043077 + RLTR13D2 LTR ERVK 612 1023 0 1 726 1344 211 80 0 chr4 18587486 18587775 -137042345 + RMER1B Other Other 580 891 -175 1 726 2254 197 154 47 chr4 18587791 18588146 -137041974 + RMER6C LTR ERVK 1 352 -338 1 726 552 30 0 0 chr4 18588146 18588212 -137041908 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 726 2254 197 154 47 chr4 18588212 18588238 -137041882 + RMER6C LTR ERVK 353 384 -306 1 726 201 94 0 0 chr4 18588238 18588270 -137041850 + (CAGTT)n Simple_repeat Simple_repeat 1 32 0 1 726 2254 197 154 47 chr4 18588270 18588504 -137041616 + RMER6C LTR ERVK 385 683 -7 1 726 401 227 104 22 chr4 18588529 18588664 -137041456 + RMER1B Other Other 919 1064 -2 1 726 257 299 11 0 chr4 18588673 18588694 -137041426 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 726 387 0 0 0 chr4 18588694 18588737 -137041383 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 726 257 299 11 0 chr4 18588737 18588802 -137041318 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 726 4381 36 4 2 chr4 18589484 18590014 -137040106 + L1Md_F2 LINE L1 6051 6581 -1 1 726 1360 56 6 0 chr4 18590864 18591043 -137039077 + L1_Mus2 LINE L1 6382 6561 -5 1 726 431 116 53 9 chr4 18591043 18591156 -137038964 + (TA)n Simple_repeat Simple_repeat 1 118 0 1 726 604 310 12 20 chr4 18591269 18591513 -137038607 + Lx7 LINE L1 7175 7416 -280 1 726 423 0 0 0 chr4 18591531 18591578 -137038542 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 726 387 60 0 0 chr4 18591578 18591627 -137038493 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 726 246 231 134 40 chr4 18591657 18591806 -137038314 + Lx7 LINE L1 7534 7696 0 1 726 518 310 75 20 chr4 18592378 18592684 -137037436 + L1MA9 LINE L1 5951 6273 -39 1 726 207 255 0 18 chr4 18592809 18592865 -137037255 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 726 615 326 16 5 chr4 18593456 18593644 -137036476 + B3 SINE B2 27 216 0 1 726 5660 67 4 15 chr4 18593738 18594482 -137035638 - L1_Mus1 LINE L1 0 6567 5832 1 726 1439 56 0 0 chr4 18594482 18594661 -137035459 + L1_Mus1 LINE L1 5665 5843 -724 1 726 3195 187 76 6 chr4 18594690 18595337 -137034783 + RLTR17 LTR ERVK 1 692 0 1 726 929 191 16 5 chr4 18595548 18595732 -137034388 - Lx3C LINE L1 -7 6969 6784 1 726 2583 137 18 0 chr4 18596430 18596817 -137033303 - Lx3C LINE L1 -304 6672 6279 1 726 34567 75 3 4 chr4 18599103 18605386 -137024734 - L1Md_F2 LINE L1 -1 6584 211 1 726 23 33 0 0 chr4 18605789 18605819 -137024301 + AT_rich Low_complexity Low_complexity 1 30 0 1 726 469 201 105 26 chr4 18606064 18606132 -137023988 + Lx6 LINE L1 7296 7370 -90 1 726 1483 171 38 38 chr4 18606132 18606449 -137023671 + RLTR46 LTR ERVK 4 320 0 1 726 469 201 105 26 chr4 18606449 18606533 -137023587 + Lx6 LINE L1 7371 7460 0 1 726 348 363 120 9 chr4 18607235 18607452 -137022668 + RMER5 LTR ERV1 123 363 -171 1 726 1059 75 0 45 chr4 18609417 18609571 -137020549 + B1_Mus1 SINE Alu 1 147 -1 1 726 209 57 0 28 chr4 18609706 18609742 -137020378 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1 726 200 230 37 82 chr4 18609771 18609869 -137020251 + MIRb SINE MIR 41 142 -126 1 726 288 0 0 0 chr4 18610905 18610937 -137019183 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 726 326 265 55 12 chr4 18611634 18611798 -137018322 - L1MA5 LINE L1 -389 5911 5741 1 726 420 20 0 0 chr4 18611894 18611943 -137018177 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 726 255 31 0 0 chr4 18611943 18611974 -137018146 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 727 35 78 0 0 chr4 18612834 18612911 -137017209 + AT_rich Low_complexity Low_complexity 1 77 0 1 727 228 226 0 0 chr4 18616541 18616603 -137013517 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 727 26 0 0 0 chr4 18616929 18616955 -137013165 + AT_rich Low_complexity Low_complexity 1 26 0 1 727 3344 160 122 47 chr4 18617686 18618250 -137011870 + RLTR25B LTR ERVK 1 610 -418 1 727 207 0 0 0 chr4 18618250 18618273 -137011847 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 727 3344 160 122 47 chr4 18618273 18618435 -137011685 + RLTR25B LTR ERVK 611 781 -247 1 727 559 259 43 37 chr4 18618706 18618870 -137011250 + RLTR25B LTR ERVK 864 1028 0 1 727 423 63 51 0 chr4 18619260 18619339 -137010781 + (CAAAA)n Simple_repeat Simple_repeat 3 85 0 1 727 2884 198 235 16 chr4 18622523 18623268 -137006852 - RMER13B LTR ERVK 0 908 1 1 727 207 69 0 0 chr4 18623290 18623319 -137006801 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 727 769 244 125 80 chr4 18623350 18623702 -137006418 - RLTR9A LTR ERVK 0 368 1 1 727 280 208 27 27 chr4 18623703 18623777 -137006343 - ETnERV2-int LTR ERVK -2 7404 7331 1 727 519 297 115 62 chr4 18623974 18624297 -137005823 - ETnERV2-int LTR ERVK -981 6425 6086 1 727 4520 135 79 30 chr4 18624294 18625127 -137004993 - ETnERV3-int LTR ERVK -1230 4176 3303 1 727 2602 116 2 20 chr4 18625155 18625559 -137004561 - L1_Mus2 LINE L1 -258 6308 5912 1 727 2872 129 15 4 chr4 18625557 18626030 -137004090 - L1_Mm LINE L1 -247 5636 5159 1 727 252 0 0 0 chr4 18626031 18626059 -137004061 + (T)n Simple_repeat Simple_repeat 1 28 0 1 727 39469 27 2 6 chr4 18626100 18632304 -136997816 - L1Md_A LINE L1 -2 6580 409 1 727 6829 181 113 58 chr4 18632327 18634309 -136995811 - ETnERV3-int LTR ERVK -2277 3531 1575 1 727 351 0 0 0 chr4 18634309 18634348 -136995772 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 727 6829 194 102 88 chr4 18634348 18634859 -136995261 - ETnERV3-int LTR ERVK -4125 1683 1197 1 727 274 275 73 73 chr4 18634930 18635232 -136994888 - ETnERV3-int LTR ERVK -2994 320 19 1 727 726 248 105 60 chr4 18635248 18635600 -136994520 - RLTR9A LTR ERVK 0 368 1 1 727 554 341 6 12 chr4 18635895 18636061 -136994059 + 7SK RNA RNA 2 166 -165 1 727 330 26 0 0 chr4 18636133 18636172 -136993948 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 727 505 293 126 52 chr4 18636319 18636487 -136993633 + B3 SINE B2 11 200 -16 1 727 1744 164 18 58 chr4 18636487 18636830 -136993290 - ORR1A4 LTR MaLR 0 329 1 1 727 505 293 126 52 chr4 18636830 18636852 -136993268 + B3 SINE B2 201 215 -1 1 727 4082 147 27 37 chr4 18637539 18638357 -136991763 + L1Md_T LINE L1 396 1205 -5411 1 727 36244 32 0 0 chr4 18638363 18642779 -136987341 + L1Md_T LINE L1 1170 5586 -297 1 727 8054 53 0 0 chr4 18642779 18643775 -136986345 + L1Md_T LINE L1 5587 6582 0 1 727 533 376 72 68 chr4 18644050 18644478 -136985642 + LTR40a LTR ERVL 85 514 -5 1 727 617 301 184 21 chr4 18644584 18645008 -136985112 - RLTR16 LTR ERVK -12 493 1 1 727 18083 4 0 0 chr4 18645095 18647828 -136982292 - L1Md_A LINE L1 0 6582 3850 1 727 180 77 0 0 chr4 18648230 18648256 -136981864 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 727 5674 86 10 4 chr4 18650099 18650880 -136979240 - L1Md_F2 LINE L1 -15 6567 5782 1 727 807 273 60 5 chr4 18650890 18651089 -136979031 - ID_B1 SINE B4 -7 217 8 1 727 189 0 0 0 chr4 18651218 18651239 -136978881 + (A)n Simple_repeat Simple_repeat 1 21 0 1 727 349 310 103 95 chr4 18651257 18651635 -136978485 + L1MEg LINE L1 1204 1584 -4500 1 727 684 343 19 22 chr4 18651876 18652147 -136977973 - MLT1C LTR MaLR -16 451 182 1 727 457 337 5 39 chr4 18652232 18652245 -136977875 - MLT1C LTR MaLR -257 210 198 1 727 386 88 15 0 chr4 18652245 18652313 -136977807 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 727 457 337 5 39 chr4 18652313 18652503 -136977617 - MLT1C LTR MaLR -270 197 14 1 727 30 83 0 0 chr4 18652751 18652823 -136977297 + AT_rich Low_complexity Low_complexity 1 72 0 1 727 524 295 31 75 chr4 18652893 18653054 -136977066 - RSINE1 SINE B4 0 165 12 1 727 699 310 72 18 chr4 18653529 18653805 -136976315 - MTEa LTR MaLR -1 378 88 1 727 189 94 0 0 chr4 18653805 18653837 -136976283 + (T)n Simple_repeat Simple_repeat 1 32 0 1 727 1214 41 0 0 chr4 18653840 18653986 -136976134 - B1_Mm SINE Alu 0 147 2 1 727 306 0 0 0 chr4 18654580 18654614 -136975506 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 727 459 0 0 0 chr4 18654614 18654664 -136975456 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 727 3756 80 14 2 chr4 18654697 18655198 -136974922 - L1_Mus1 LINE L1 -1 6566 6060 1 727 405 266 99 38 chr4 18655762 18655973 -136974147 - L1MC LINE L1 -1404 4742 4519 1 727 315 0 0 0 chr4 18655984 18656019 -136974101 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 727 597 28 0 0 chr4 18656019 18656089 -136974031 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 727 336 317 80 55 chr4 18656105 18656615 -136973505 + L1MC1 LINE L1 4823 5361 -972 1 727 378 0 0 0 chr4 18656615 18656657 -136973463 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 727 336 298 130 32 chr4 18656657 18656833 -136973287 + L1MC1 LINE L1 5362 5535 -798 1 727 3574 47 0 9 chr4 18656934 18657386 -136972734 - L1Md_F2 LINE L1 0 6582 6135 1 727 751 313 4 44 chr4 18657456 18657683 -136972437 - 7SK RNA RNA -101 230 13 1 727 312 286 84 21 chr4 18657956 18658099 -136972021 + L1MC1 LINE L1 5812 5963 -370 1 727 12486 196 49 10 chr4 18658473 18661833 -136968287 + L1VL4 LINE L1 816 4295 -1582 1 727 180 0 0 0 chr4 18661918 18661938 -136968182 + (A)n Simple_repeat Simple_repeat 1 20 0 2 727 589 319 109 25 chr4 18662136 18662457 -136967663 + ORR1E LTR MaLR 3 350 -9 2 727 601 340 110 51 chr4 18662508 18662864 -136967256 - MLT2B1 LTR ERVL -65 455 79 2 727 26 0 0 0 chr4 18662899 18662925 -136967195 + AT_rich Low_complexity Low_complexity 1 26 0 2 727 2968 128 0 11 chr4 18663532 18664000 -136966120 - L1_Mur1 LINE L1 -729 5157 4695 2 727 2394 168 24 0 chr4 18664000 18664412 -136965708 + Lx3A LINE L1 6551 6972 -9 2 727 26 30 0 0 chr4 18664754 18664787 -136965333 + AT_rich Low_complexity Low_complexity 1 33 0 2 727 196 53 26 26 chr4 18664984 18665023 -136965097 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 727 182 188 0 0 chr4 18665421 18665453 -136964667 - MER5A DNA MER1_type -1 188 157 2 727 561 333 81 23 chr4 18665632 18665853 -136964267 - B4A SINE B4 -6 286 53 2 727 2407 195 118 52 chr4 18665850 18666663 -136963457 - RMER6C LTR ERVK -4 716 1 2 727 384 22 0 0 chr4 18666733 18666778 -136963342 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 727 195 42 0 0 chr4 18666806 18666830 -136963290 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 727 300 137 0 0 chr4 18666904 18666955 -136963165 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 727 7358 104 16 2 chr4 18667177 18668407 -136961713 - L1_Mus3 LINE L1 -5 6633 5393 2 727 5194 93 7 90 chr4 18668407 18669283 -136960837 - RLTR13B4 LTR ERVK 0 803 1 2 727 5577 146 14 10 chr4 18669283 18669731 -136960389 - L1_Mus3 LINE L1 -491 5392 4946 2 727 26 74 0 0 chr4 18670013 18670067 -136960053 + AT_rich Low_complexity Low_complexity 1 54 0 2 727 378 181 0 0 chr4 18670086 18670158 -136959962 - L1_Mur3 LINE L1 -1098 4782 4711 2 727 403 371 116 26 chr4 18670263 18670642 -136959478 + Lx8 LINE L1 7055 7467 -6 2 727 222 143 0 93 chr4 18670671 18670725 -136959395 + A-rich Low_complexity Low_complexity 2 50 0 2 727 917 151 0 14 chr4 18671660 18671808 -136958312 - B1_Mus1 SINE Alu 0 148 3 2 727 1467 245 55 27 chr4 18672400 18672865 -136957255 - RMER17B LTR ERVK -395 563 1 2 727 1217 170 31 0 chr4 18672865 18673089 -136957031 - Lx2 LINE L1 -690 6307 6077 2 727 389 82 33 0 chr4 18673343 18673404 -136956716 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 2 727 261 0 0 0 chr4 18673412 18673441 -136956679 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 727 595 347 0 0 chr4 18673443 18673593 -136956527 - RSINE1 SINE B4 -12 153 4 2 727 274 43 0 0 chr4 18673712 18673758 -136956362 - Lx LINE L1 -1 6653 6608 2 727 4226 46 2 0 chr4 18673931 18674448 -136955672 - L1Md_F2 LINE L1 -2 6580 6063 2 727 183 80 0 0 chr4 18674449 18674474 -136955646 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 727 13854 178 17 100 chr4 18674474 18680681 -136949439 - Lx3_Mus LINE L1 -21 6988 1541 2 727 2558 75 19 0 chr4 18680681 18681040 -136949080 + L1_Mus3 LINE L1 5848 6213 -425 2 727 303 71 0 0 chr4 18681259 18681301 -136948819 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 727 24 32 0 0 chr4 18681301 18681332 -136948788 + AT_rich Low_complexity Low_complexity 1 31 0 2 727 682 295 162 31 chr4 18681373 18681804 -136948316 - Lx8 LINE L1 -248 7225 6739 2 727 33 43 0 0 chr4 18682366 18682413 -136947707 + AT_rich Low_complexity Low_complexity 1 47 0 2 727 185 333 16 16 chr4 18682604 18682668 -136947452 + L3 LINE CR1 3989 4052 -437 2 727 281 330 20 30 chr4 18682876 18683073 -136947047 - L1M2 LINE L1 -939 5204 5010 2 727 303 314 37 25 chr4 18683251 18683414 -136946706 + L1M2 LINE L1 3814 3978 -2165 2 727 191 343 36 22 chr4 18683778 18683915 -136946205 - MIR SINE MIR 0 262 124 2 727 255 305 17 35 chr4 18683932 18684075 -136946045 - L1_Mur1 LINE L1 -1996 3890 3741 2 727 318 338 81 0 chr4 18684257 18684417 -136945703 + L1MC LINE L1 4300 4472 -1674 2 727 207 0 0 0 chr4 18684662 18684685 -136945435 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 727 3042 170 30 21 chr4 18684733 18685340 -136944780 - Lx2B LINE L1 -3 6997 6386 2 727 216 0 0 0 chr4 18685340 18685364 -136944756 + (T)n Simple_repeat Simple_repeat 1 24 0 2 727 2169 198 7 8 chr4 18686311 18686909 -136943211 + L1VL4 LINE L1 865 1461 -4416 2 727 594 114 0 37 chr4 18686879 18686988 -136943132 + L1VL4 LINE L1 2226 2330 -1584 2 727 21 0 0 0 chr4 18687004 18687025 -136943095 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 7999 45 5 2 chr4 18687025 18688150 -136941970 - L1Md_F2 LINE L1 -15 6567 5439 2 727 2719 175 48 9 chr4 18688157 18688723 -136941397 + L1VL4 LINE L1 2321 2908 -1006 2 727 473 181 0 0 chr4 18688726 18688809 -136941311 + L1_Mur1 LINE L1 5334 5416 -470 2 727 2840 197 55 26 chr4 18688806 18689425 -136940695 + Lx3C LINE L1 6299 6935 -41 2 727 273 163 0 0 chr4 18689845 18689894 -136940226 + A-rich Low_complexity Low_complexity 1 49 0 2 727 188 114 45 0 chr4 18690521 18690565 -136939555 + T-rich Low_complexity Low_complexity 3 48 0 2 727 849 75 0 0 chr4 18690566 18690686 -136939434 - B1_Mus1 SINE Alu 0 148 29 2 727 5190 39 0 17 chr4 18690686 18691337 -136938783 + L1Md_F2 LINE L1 5932 6571 -11 2 727 276 100 0 0 chr4 18691347 18691387 -136938733 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 2 727 26 0 0 0 chr4 18691420 18691446 -136938674 + AT_rich Low_complexity Low_complexity 1 26 0 2 727 236 389 34 11 chr4 18691459 18691636 -136938484 - B3A SINE B2 -16 182 2 2 727 387 0 0 0 chr4 18691780 18691823 -136938297 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 727 225 132 0 0 chr4 18691833 18691871 -136938249 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2 727 180 244 0 22 chr4 18692018 18692064 -136938056 + L2 LINE L2 216 260 -3159 2 727 3275 65 7 2 chr4 18693127 18693556 -136936564 - L1_Mus2 LINE L1 -385 6181 5751 2 727 2628 78 6 0 chr4 18693556 18693915 -136936205 + L1_Mus2 LINE L1 6206 6566 0 2 727 207 0 0 0 chr4 18693943 18693966 -136936154 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2 727 270 21 20 41 chr4 18694573 18694622 -136935498 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 727 1109 52 0 0 chr4 18694622 18694758 -136935362 - B1_Mus1 SINE Alu -11 137 2 2 727 22 80 0 0 chr4 18695561 18695611 -136934509 + AT_rich Low_complexity Low_complexity 1 50 0 2 727 374 375 0 7 chr4 18695653 18695668 -136934452 - RSINE1 SINE B4 -29 136 122 2 727 288 127 0 0 chr4 18695668 18695723 -136934397 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 727 374 375 0 7 chr4 18695723 18695844 -136934276 - RSINE1 SINE B4 -44 121 1 2 727 240 183 83 14 chr4 18695921 18695993 -136934127 - Lx9 LINE L1 -19 7625 7549 2 727 1822 161 24 9 chr4 18696015 18696348 -136933772 + RLTR31A_Mm LTR ERVK 3 340 -244 2 727 1324 238 105 0 chr4 18696455 18696799 -136933321 - Lx9 LINE L1 -179 7465 7086 2 727 22 35 0 0 chr4 18698318 18698347 -136931773 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 235 321 54 95 chr4 18698486 18698634 -136931486 - MTEa LTR MaLR -9 370 229 2 727 273 128 0 0 chr4 18698649 18698696 -136931424 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 2 727 524 303 7 0 chr4 18698792 18698934 -136931186 - MTEa LTR MaLR -234 145 3 2 727 647 296 84 43 chr4 18700072 18700740 -136929380 - Lx9 LINE L1 -1782 5914 5168 2 727 1136 284 35 44 chr4 18700766 18701171 -136928949 + Lx8 LINE L1 6284 6684 -789 2 727 342 330 116 104 chr4 18701184 18701279 -136928841 + Lx8 LINE L1 6794 6886 -587 2 727 5628 54 0 0 chr4 18701279 18701983 -136928137 - L1Md_F2 LINE L1 -12 6570 5867 2 727 1017 83 14 0 chr4 18701986 18702131 -136927989 - B1_Mm SINE Alu 0 147 1 2 727 342 330 116 104 chr4 18702131 18702349 -136927771 + Lx8 LINE L1 6887 7115 -358 2 727 372 347 50 5 chr4 18703010 18703230 -136926890 - L1MB4 LINE L1 -138 6042 5813 2 727 2902 336 72 34 chr4 18705026 18706364 -136923756 - MTE-int LTR MaLR -189 1391 2 2 727 663 326 69 55 chr4 18706377 18706666 -136923454 - MTEa LTR MaLR -45 334 42 2 727 820 295 48 98 chr4 18707293 18707691 -136922429 + MTE2a LTR MaLR 2 379 0 2 727 21 0 0 0 chr4 18707697 18707718 -136922402 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 245 365 122 0 chr4 18708018 18708133 -136921987 + ID_B1 SINE B4 93 221 -3 2 727 203 271 40 30 chr4 18708754 18708853 -136921267 + L3b LINE CR1 23 122 -360 2 727 799 137 7 0 chr4 18708896 18709042 -136921078 + Lx2A1 LINE L1 6857 7003 -5 2 727 35 24 0 0 chr4 18710043 18710085 -136920035 + AT_rich Low_complexity Low_complexity 1 42 0 2 727 265 280 26 13 chr4 18710884 18710960 -136919160 + MER63B DNA AcHobo 312 388 -48 2 727 184 262 48 0 chr4 18711282 18711324 -136918796 - L2 LINE L2 -534 2885 2842 2 727 273 29 0 0 chr4 18711884 18711918 -136918202 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 727 227 328 47 84 chr4 18713240 18713375 -136916745 - Lx8 LINE L1 -9 7464 7328 2 727 476 16 16 0 chr4 18713375 18713436 -136916684 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 727 227 328 47 84 chr4 18713436 18713513 -136916607 - Lx8 LINE L1 -146 7327 7260 2 727 1064 277 20 7 chr4 18713724 18714026 -136916094 - Lx9 LINE L1 -242 7402 7097 2 727 1089 258 74 30 chr4 18714068 18714198 -136915922 + Lx9 LINE L1 6680 6807 -837 2 727 396 0 0 0 chr4 18714198 18714242 -136915878 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 727 1089 258 74 30 chr4 18714242 18714450 -136915670 + Lx9 LINE L1 6808 7032 -612 2 727 1116 71 0 0 chr4 18714453 18714593 -136915527 + B1_Mus1 SINE Alu 2 141 -7 2 727 23 0 0 0 chr4 18714924 18714947 -136915173 + AT_rich Low_complexity Low_complexity 1 23 0 2 727 32 0 0 0 chr4 18715338 18715370 -136914750 + AT_rich Low_complexity Low_complexity 1 32 0 2 727 250 315 37 30 chr4 18715985 18716119 -136914001 + BC1_Mm scRNA scRNA 2 136 -16 2 727 876 246 22 9 chr4 18716554 18716784 -136913336 + Lx7 LINE L1 7012 7244 -452 2 727 463 338 29 63 chr4 18716784 18717012 -136913108 - MTEa LTR MaLR -91 288 69 2 727 369 95 0 0 chr4 18717012 18717075 -136913045 + (A)n Simple_repeat Simple_repeat 1 63 0 2 727 22 35 0 0 chr4 18717825 18717854 -136912266 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 1500 68 4 35 chr4 18717854 18718081 -136912039 + L1_Mus2 LINE L1 6346 6565 -1 2 727 183 384 176 29 chr4 18718414 18718857 -136911263 + L2a LINE L2 2915 3422 -4 2 727 187 233 0 43 chr4 18719017 18719111 -136911009 + GA-rich Low_complexity Low_complexity 3 92 0 3 727 198 0 0 0 chr4 18721078 18721100 -136909020 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 727 1630 140 93 103 chr4 18721189 18721586 -136908534 + RLTR9C LTR ERVK 1 393 0 3 727 191 338 71 50 chr4 18721655 18721795 -136908325 - L2c LINE L2 -215 3172 3030 3 727 21 36 0 0 chr4 18722300 18722328 -136907792 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 24 0 0 0 chr4 18722502 18722526 -136907594 + AT_rich Low_complexity Low_complexity 1 24 0 3 727 22 0 0 0 chr4 18723507 18723529 -136906591 + AT_rich Low_complexity Low_complexity 1 22 0 3 727 816 119 11 11 chr4 18723771 18723949 -136906171 + (TC)n Simple_repeat Simple_repeat 2 179 0 3 727 2775 161 19 2 chr4 18723988 18724461 -136905659 + Lx LINE L1 6174 6654 0 3 727 6482 142 24 5 chr4 18724926 18725131 -136904989 - L1_Mm LINE L1 -525 5358 5156 3 727 1059 130 30 30 chr4 18725131 18725329 -136904791 - L1_Mus3 LINE L1 -5 6633 6436 3 727 6482 142 24 5 chr4 18725329 18726234 -136903886 - L1_Mm LINE L1 -728 5155 4227 3 727 7303 102 12 1 chr4 18726232 18727477 -136902643 + L1_Mus3 LINE L1 5372 6629 -9 3 727 746 250 0 0 chr4 18727742 18727882 -136902238 - B1_Mur2 SINE Alu -8 141 2 3 727 499 314 135 0 chr4 18727962 18728147 -136901973 + B3 SINE B2 1 210 -6 3 727 1100 82 0 0 chr4 18728440 18728587 -136901533 + B1_Mus2 SINE Alu 1 147 0 3 727 582 209 156 47 chr4 18728657 18728826 -136901294 - L1_Mur2 LINE L1 -457 5420 5228 3 727 720 111 0 0 chr4 18728826 18728934 -136901186 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 727 582 209 156 47 chr4 18728934 18728975 -136901145 - L1_Mur2 LINE L1 -650 5227 5187 3 727 7306 175 177 36 chr4 18728973 18730033 -136900087 - Lx4B LINE L1 -895 6163 4823 3 727 3918 48 90 11 chr4 18730033 18730556 -136899564 - LTRIS2 LTR ERV1 0 564 1 3 727 7306 167 224 46 chr4 18730556 18731809 -136898311 - Lx4B LINE L1 -1055 4822 3471 3 727 488 69 19 38 chr4 18731839 18731944 -136898176 + (TTTTTG)n Simple_repeat Simple_repeat 1 103 0 3 727 209 161 0 35 chr4 18731957 18732015 -136898105 + T-rich Low_complexity Low_complexity 1 56 0 3 727 330 179 10 113 chr4 18732154 18732349 -136897771 + T-rich Low_complexity Low_complexity 2 176 0 3 727 200 59 29 0 chr4 18732473 18732507 -136897613 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 727 204 122 0 0 chr4 18732583 18732624 -136897496 + (T)n Simple_repeat Simple_repeat 1 41 0 3 727 188 100 25 0 chr4 18732799 18732839 -136897281 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 3 727 2512 205 10 20 chr4 18732845 18733443 -136896677 - MusHAL1 LINE L1 -419 2293 1702 3 727 424 289 30 0 chr4 18733613 18733779 -136896341 + Lx9 LINE L1 7313 7483 -161 3 727 1138 82 0 0 chr4 18733947 18734094 -136896026 + B1_Mus1 SINE Alu 2 148 0 3 727 36 23 0 0 chr4 18734108 18734151 -136895969 + AT_rich Low_complexity Low_complexity 1 43 0 3 727 23 0 0 0 chr4 18734187 18734210 -136895910 + AT_rich Low_complexity Low_complexity 1 23 0 3 727 37942 16 2 8 chr4 18735133 18740526 -136889594 + L1Md_A LINE L1 232 5586 -297 3 727 8794 15 0 0 chr4 18740526 18741522 -136888598 + L1Md_A LINE L1 5587 6582 0 3 727 37942 12 1 0 chr4 18741522 18741541 -136888579 + L1Md_A LINE L1 5587 5610 -273 3 727 204 255 0 19 chr4 18742366 18742418 -136887702 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3 728 217 362 19 19 chr4 18743640 18743747 -136886373 + B1F SINE Alu 42 148 -1 3 728 378 281 204 29 chr4 18743864 18744036 -136886084 - Lx6 LINE L1 -26 7434 7233 3 728 1129 226 27 37 chr4 18744038 18744332 -136885788 + Lx7 LINE L1 7405 7695 -1 3 728 2021 174 276 6 chr4 18744794 18745337 -136884783 - RMER6C LTR ERVK 0 690 1 3 728 2644 91 20 17 chr4 18745338 18745741 -136884379 - Lx LINE L1 -4 6650 6247 3 728 317 231 104 20 chr4 18745741 18745839 -136884281 - B1_Mur1 SINE Alu -14 135 17 3 728 522 281 113 44 chr4 18746825 18747193 -136882927 + L1M2 LINE L1 4681 5059 -1081 3 728 335 304 131 13 chr4 18747932 18748169 -136881951 + L1M2 LINE L1 5295 5559 -741 3 728 193 29 59 0 chr4 18748917 18748951 -136881169 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 728 372 316 97 37 chr4 18749214 18749513 -136880607 - L1M5 LINE L1 -2713 3433 3117 3 728 2127 262 71 8 chr4 18749518 18750052 -136880068 - Lx6 LINE L1 -9 7451 6884 3 728 582 322 24 8 chr4 18750457 18750657 -136879463 - B3A SINE B2 -21 195 1 3 728 1054 314 89 14 chr4 18750739 18751166 -136878954 - Lx7 LINE L1 -412 7284 6826 3 728 61 27 0 0 chr4 18751834 18751909 -136878211 + AT_rich Low_complexity Low_complexity 1 75 0 3 728 26 0 0 0 chr4 18751951 18751977 -136878143 + AT_rich Low_complexity Low_complexity 1 26 0 3 728 3009 202 50 10 chr4 18751988 18752088 -136878032 - Lx3C LINE L1 0 6976 6857 3 728 438 20 0 0 chr4 18752088 18752139 -136877981 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 728 3009 202 50 10 chr4 18752139 18752654 -136877466 - Lx3C LINE L1 -120 6856 6336 3 728 542 258 32 19 chr4 18752796 18752954 -136877166 - Lx8 LINE L1 -642 6831 6672 3 728 550 143 0 19 chr4 18752955 18753062 -136877058 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 728 235 317 96 70 chr4 18753273 18753429 -136876691 - RSINE1 SINE B4 -3 162 3 3 728 391 78 0 30 chr4 18753992 18754058 -136876062 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 728 396 0 0 0 chr4 18754058 18754101 -136876019 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 728 3229 58 2 0 chr4 18754352 18754747 -136875373 - MTA_Mm LTR MaLR 0 396 1 3 728 185 349 33 65 chr4 18755029 18755121 -136874999 + MER5A DNA MER1_type 1 89 -100 3 728 223 398 45 0 chr4 18755358 18755446 -136874674 + PB1D10 SINE Alu 8 99 -18 3 728 219 229 0 0 chr4 18755490 18755551 -136874569 + GA-rich Low_complexity Low_complexity 3 63 0 3 728 850 159 11 11 chr4 18755587 18755765 -136874355 + GA-rich Low_complexity Low_complexity 3 180 0 3 728 922 169 4 11 chr4 18755805 18756066 -136874054 + GA-rich Low_complexity Low_complexity 1 259 0 3 728 288 77 0 0 chr4 18756321 18756360 -136873760 + (T)n Simple_repeat Simple_repeat 1 39 0 3 728 1164 57 0 0 chr4 18756362 18756502 -136873618 - B1_Mm SINE Alu -7 140 1 3 728 785 31 0 0 chr4 18757311 18757408 -136872712 + B1_Mm SINE Alu 47 143 -4 3 728 607 325 5 62 chr4 18757991 18758201 -136871919 - B3A SINE B2 0 198 1 3 728 1013 145 0 6 chr4 18759184 18759364 -136870756 + CT-rich Low_complexity Low_complexity 2 180 0 3 728 584 132 0 9 chr4 18759364 18759471 -136870649 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 3 728 394 358 52 35 chr4 18759496 18759725 -136870395 - RMER15 LTR ERVL -155 420 188 3 728 1795 238 86 45 chr4 18759786 18760156 -136869964 - Lx2B LINE L1 -1 6999 6630 3 728 360 0 0 0 chr4 18760156 18760196 -136869924 + (TATG)n Simple_repeat Simple_repeat 2 41 0 3 728 1795 238 86 45 chr4 18760196 18760454 -136869666 - Lx2B LINE L1 -371 6629 6345 3 728 2110 98 13 0 chr4 18760908 18761214 -136868906 - L1_Mus3 LINE L1 -5 6633 6324 3 728 1361 96 4 40 chr4 18763093 18763320 -136866800 + L1_Mus2 LINE L1 6346 6564 -2 3 728 219 342 52 13 chr4 18764372 18764449 -136865671 - PB1D10 SINE Alu -14 103 24 3 728 5916 141 16 12 chr4 18764785 18765793 -136864327 + Lx3B LINE L1 5961 6972 -1 3 728 25 51 0 0 chr4 18765800 18765839 -136864281 + AT_rich Low_complexity Low_complexity 1 39 0 3 728 361 341 63 8 chr4 18765931 18766058 -136864062 - B1F SINE Alu -15 134 1 3 728 409 262 52 96 chr4 18766216 18766351 -136863769 + B1_Mus1 SINE Alu 19 147 -1 3 728 697 195 11 6 chr4 18766351 18766526 -136863594 + GA-rich Low_complexity Low_complexity 1 176 0 3 728 260 325 92 46 chr4 18768235 18768519 -136861601 - L1MB1 LINE L1 -62 6106 5810 3 728 317 252 19 37 chr4 18769132 18769239 -136860881 - L1M2 LINE L1 -779 5364 5260 3 728 288 0 0 0 chr4 18770268 18770300 -136859820 + (T)n Simple_repeat Simple_repeat 1 32 0 3 728 1116 88 0 0 chr4 18770300 18770447 -136859673 - B1_Mus2 SINE Alu 0 147 1 3 728 1750 46 5 0 chr4 18770453 18770671 -136859449 + L1_Mus1 LINE L1 6347 6565 -2 3 728 180 0 0 0 chr4 18770829 18770849 -136859271 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3 728 7385 132 70 25 chr4 18773059 18774335 -136855785 - Lx2B LINE L1 -5 6995 5662 3 728 647 138 0 4 chr4 18774336 18774457 -136855663 - Lx2B LINE L1 -416 5467 5345 3 728 317 312 33 47 chr4 18774847 18775016 -136855104 - MLT1J1 LTR MaLR -18 430 270 3 728 376 249 53 21 chr4 18775236 18775414 -136854706 + L1MA7 LINE L1 5811 5997 -1647 3 728 790 239 36 53 chr4 18775479 18775726 -136854394 + RMER15 LTR ERVL 22 264 -311 3 728 1043 316 65 10 chr4 18776067 18776454 -136853666 + RMER15 LTR ERVL 168 575 0 3 728 315 71 0 0 chr4 18776615 18776657 -136853463 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 728 33 56 0 0 chr4 18776674 18776728 -136853392 + AT_rich Low_complexity Low_complexity 1 54 0 3 728 903 312 161 32 chr4 18776768 18777477 -136852643 + Lx8 LINE L1 6291 7090 -383 3 728 429 337 124 38 chr4 18777492 18777782 -136852338 + Lx8 LINE L1 7131 7445 -28 3 728 935 296 29 48 chr4 18778431 18778747 -136851373 - MTE2a LTR MaLR -12 367 58 3 728 210 192 0 0 chr4 18778753 18778805 -136851315 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 728 730 189 21 0 chr4 18778829 18778972 -136851148 - B1_Mur4 SINE Alu -4 146 1 3 728 25 75 0 0 chr4 18779167 18779220 -136850900 + AT_rich Low_complexity Low_complexity 1 53 0 3 728 601 270 7 42 chr4 18779497 18779640 -136850480 + B1_Mur3 SINE Alu 6 143 -6 3 728 929 164 0 11 chr4 18779645 18779824 -136850296 + GA-rich Low_complexity Low_complexity 1 177 0 3 728 2073 141 63 15 chr4 18779874 18780284 -136849836 + RMER17A2 LTR ERVK 1 430 -476 3 728 21 0 0 0 chr4 18780354 18780375 -136849745 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 1680 255 38 31 chr4 18781664 18782719 -136847401 + Lx6 LINE L1 2361 2739 -3141 3 728 336 363 104 58 chr4 18782716 18783254 -136846866 + Lx8 LINE L1 6906 7468 -5 3 728 7618 141 6 2 chr4 18783269 18784499 -136845621 - L1_Mus3 LINE L1 -78 5805 4572 3 728 5294 96 28 0 chr4 18784500 18785264 -136844856 + L1_Mus3 LINE L1 5853 6637 -1 3 728 293 424 49 5 chr4 18785840 18786044 -136844076 + MLT2B3 LTR ERVL 21 233 -321 4 728 256 172 17 17 chr4 18786132 18786191 -136843929 + RMER17C-int LTR ERVK 2840 2898 -340 4 728 279 258 16 48 chr4 18787119 18787245 -136842875 + (TATG)n Simple_repeat Simple_repeat 1 122 0 4 728 215 61 0 29 chr4 18788041 18788075 -136842045 + (ATG)n Simple_repeat Simple_repeat 2 34 0 4 728 312 189 344 0 chr4 18788077 18788167 -136841953 - RSINE1 SINE B4 -33 132 12 4 728 333 47 0 0 chr4 18789480 18789523 -136840597 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 728 504 272 64 23 chr4 18789597 18789770 -136840350 + B3A SINE B2 1 180 -18 4 728 182 390 67 0 chr4 18789921 18790026 -136840094 + MIR SINE MIR 3 114 -148 4 728 23 0 0 0 chr4 18790860 18790883 -136839237 + AT_rich Low_complexity Low_complexity 1 23 0 4 728 576 42 0 0 chr4 18791105 18791176 -136838944 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 4 728 545 191 15 0 chr4 18791181 18791312 -136838808 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 4 728 951 315 42 24 chr4 18791390 18791725 -136838395 + MTEb LTR MaLR 1 341 -38 4 728 605 259 66 0 chr4 18791749 18791915 -136838205 + Lx8 LINE L1 6983 7159 -314 4 728 486 0 0 0 chr4 18792061 18792115 -136838005 + (TAA)n Simple_repeat Simple_repeat 3 56 0 4 728 409 302 93 120 chr4 18792229 18793201 -136836919 + L1MC LINE L1 4365 5309 -837 4 728 288 283 117 52 chr4 18793277 18793508 -136836612 + L1M3 LINE L1 2937 3182 -2961 4 728 783 301 116 4 chr4 18793537 18794020 -136836100 + L1M3 LINE L1 3272 3808 -2332 4 728 26 0 0 0 chr4 18794061 18794087 -136836033 + AT_rich Low_complexity Low_complexity 1 26 0 4 728 307 296 51 15 chr4 18794088 18794225 -136835895 + L1M3 LINE L1 3946 4087 -2053 4 728 2816 139 36 2 chr4 18794316 18794790 -136835330 - Lx3A LINE L1 -6 6975 6486 4 728 261 0 0 0 chr4 18798186 18798215 -136831905 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 728 447 68 0 0 chr4 18798215 18798273 -136831847 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 728 250 216 13 39 chr4 18798519 18798596 -136831524 + A-rich Low_complexity Low_complexity 2 76 0 4 728 252 0 0 0 chr4 18798617 18798645 -136831475 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4 728 1465 184 70 9 chr4 18798703 18799032 -136831088 + RMER6C LTR ERVK 342 690 0 4 728 24 32 0 0 chr4 18799079 18799110 -136831010 + AT_rich Low_complexity Low_complexity 1 31 0 4 728 32 43 0 0 chr4 18799375 18799421 -136830699 + AT_rich Low_complexity Low_complexity 1 46 0 4 728 971 89 0 40 chr4 18800026 18800178 -136829942 + B1_Mus1 SINE Alu 1 146 -2 4 728 246 62 0 0 chr4 18800292 18800324 -136829796 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4 728 1622 269 137 21 chr4 18800390 18800922 -136829198 + L1_Mur3 LINE L1 3640 4205 -1675 4 728 207 0 0 0 chr4 18800922 18800945 -136829175 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 728 1622 269 137 21 chr4 18800945 18801271 -136828849 + L1_Mur3 LINE L1 4206 4598 -1282 4 728 594 215 185 0 chr4 18801310 18801445 -136828675 - RMER6D LTR ERVK -4 716 557 4 728 687 226 9 87 chr4 18801452 18801670 -136828450 - RMER6A LTR ERVK -73 683 483 4 728 312 288 57 9 chr4 18801976 18802081 -136828039 + PB1D10 SINE Alu 8 117 0 4 728 24 0 0 0 chr4 18802443 18802467 -136827653 + AT_rich Low_complexity Low_complexity 1 24 0 4 728 330 348 54 0 chr4 18802756 18802868 -136827252 + B1F1 SINE Alu 6 123 -26 4 728 245 279 0 0 chr4 18802881 18802949 -136827171 + (TAA)n Simple_repeat Simple_repeat 1 68 0 4 728 387 0 0 0 chr4 18803172 18803215 -136826905 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 728 189 0 0 0 chr4 18803229 18803250 -136826870 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 728 1045 170 5 20 chr4 18803280 18803484 -136826636 - Lx LINE L1 0 6654 6454 4 728 5380 170 16 51 chr4 18803491 18804375 -136825745 - L1_Mm LINE L1 -41 5842 4996 4 728 1052 88 0 0 chr4 18804375 18804512 -136825608 - B1_Mus2 SINE Alu -10 137 1 4 728 5380 170 16 51 chr4 18804512 18804721 -136825399 - L1_Mm LINE L1 -888 4995 4788 4 728 1177 170 5 0 chr4 18804740 18804952 -136825168 + L1_Mur1 LINE L1 4483 4695 -1191 4 728 326 117 0 0 chr4 18805637 18805697 -136824423 - L1Md_F2 LINE L1 -3 6579 6520 4 728 1027 130 0 0 chr4 18806843 18806989 -136823131 + Lx LINE L1 6065 6210 -444 4 728 2699 64 11 18 chr4 18807731 18808111 -136822009 - L1Md_F2 LINE L1 -4 6578 6202 4 728 260 32 0 0 chr4 18808112 18808143 -136821977 + L1_Mus1 LINE L1 6141 6171 -396 4 728 6501 91 36 20 chr4 18808685 18810099 -136820021 + L1VL4 LINE L1 400 1842 -1717 4 728 3728 148 8 75 chr4 18810098 18810388 -136819732 + Lx LINE L1 5189 5446 -437 4 728 641 201 51 40 chr4 18810388 18810564 -136819556 + B2_Mm2 SINE B2 4 181 -14 4 728 6007 143 38 22 chr4 18810564 18811757 -136818363 + Lx LINE L1 5447 6652 -2 4 728 26 50 0 0 chr4 18812941 18812981 -136817139 + AT_rich Low_complexity Low_complexity 1 40 0 4 728 345 24 0 0 chr4 18813538 18813580 -136816540 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 728 595 307 101 26 chr4 18814079 18814444 -136815676 - MTD LTR MaLR 0 419 4 4 728 189 389 54 23 chr4 18815104 18815233 -136814887 + L2a LINE L2 3289 3421 -5 4 728 1095 58 0 0 chr4 18816882 18817021 -136813099 + B1_Mus1 SINE Alu 1 139 -9 4 728 274 0 73 0 chr4 18817021 18817062 -136813058 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 728 650 311 35 81 chr4 18817328 18817611 -136812509 - MLT2B1 LTR ERVL -248 272 3 4 728 906 301 63 14 chr4 18819675 18820014 -136810106 - MTE2b LTR MaLR -4 375 1 4 728 618 279 86 5 chr4 18820072 18820270 -136809850 + Lx9 LINE L1 6705 6918 -726 4 728 794 281 79 15 chr4 18820331 18820598 -136809522 + Lx6 LINE L1 7151 7434 -26 4 728 711 259 127 26 chr4 18820852 18821196 -136808924 + L1_Rod LINE L1 4072 4452 -1431 4 728 591 302 172 0 chr4 18821197 18821435 -136808685 - MTEa LTR MaLR -3 376 98 4 728 242 236 151 0 chr4 18821437 18821543 -136808577 + Lx9 LINE L1 7498 7619 -25 4 728 26 30 0 0 chr4 18822482 18822515 -136807605 + AT_rich Low_complexity Low_complexity 1 33 0 4 728 279 0 0 0 chr4 18823730 18823761 -136806359 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 728 222 190 0 0 chr4 18823761 18823775 -136806345 + T-rich Low_complexity Low_complexity 66 79 0 4 728 1184 48 0 0 chr4 18823775 18823922 -136806198 - B1_Mus1 SINE Alu 0 148 2 4 728 222 190 0 0 chr4 18823922 18823986 -136806134 + T-rich Low_complexity Low_complexity 2 65 0 4 728 2735 61 25 3 chr4 18824261 18824623 -136805497 - L1_Mus1 LINE L1 0 6567 6198 4 728 1960 84 11 0 chr4 18824629 18824892 -136805228 + L1Md_F2 LINE L1 5958 6223 -359 4 728 204 224 0 0 chr4 18825552 18825601 -136804519 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 4 728 226 393 63 14 chr4 18825728 18825950 -136804170 - MIR SINE MIR -2 260 28 4 728 669 25 0 0 chr4 18825982 18826061 -136804059 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 728 247 246 49 8 chr4 18826066 18826189 -136803931 + (TA)n Simple_repeat Simple_repeat 1 128 0 4 728 216 0 0 0 chr4 18826230 18826254 -136803866 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 728 1103 71 0 0 chr4 18826258 18826399 -136803721 - B1_Mus2 SINE Alu -6 141 1 4 728 186 323 30 70 chr4 18826939 18827039 -136803081 + L2c LINE L2 3085 3180 -207 4 728 247 220 0 0 chr4 18827201 18827251 -136802869 - U5 snRNA snRNA -66 50 1 4 728 600 14 0 0 chr4 18827956 18828025 -136802095 + (CAATA)n Simple_repeat Simple_repeat 4 72 0 4 728 25 75 0 0 chr4 18828236 18828289 -136801831 + AT_rich Low_complexity Low_complexity 1 53 0 4 728 630 307 126 11 chr4 18828566 18828836 -136801284 + Lx8 LINE L1 6308 6608 -865 4 728 981 132 0 0 chr4 18828911 18829078 -136801042 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 4 728 332 278 95 31 chr4 18829085 18829244 -136800876 + HAL1-3A_ME LINE L1 2284 2439 -419 4 728 253 384 68 7 chr4 18829875 18830022 -136800098 + Tigger5 DNA MER2_type 73 228 -2178 4 728 24 96 0 0 chr4 18830123 18830196 -136799924 + AT_rich Low_complexity Low_complexity 1 73 0 4 728 443 211 34 123 chr4 18830421 18830567 -136799553 + MT2B LTR ERVL 132 264 -337 4 728 1051 84 0 0 chr4 18830460 18830602 -136799518 + B1_Mus1 SINE Alu 7 148 0 4 728 209 33 0 32 chr4 18830602 18830633 -136799487 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 728 21 36 0 0 chr4 18830725 18830753 -136799367 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 189 121 0 0 chr4 18831200 18831233 -136798887 + (A)n Simple_repeat Simple_repeat 1 33 0 4 728 210 91 0 0 chr4 18832404 18832437 -136797683 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 728 21 57 0 0 chr4 18832805 18832840 -136797280 + AT_rich Low_complexity Low_complexity 1 35 0 4 728 2273 171 36 10 chr4 18833614 18834003 -136796117 + ORR1B1 LTR MaLR 11 394 0 4 728 315 0 0 0 chr4 18834918 18834953 -136795167 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 728 219 404 40 10 chr4 18835012 18835112 -136795008 - PB1D10 SINE Alu -13 104 2 4 728 24 32 0 0 chr4 18835121 18835152 -136794968 + AT_rich Low_complexity Low_complexity 1 31 0 4 728 769 246 174 43 chr4 18835378 18835705 -136794415 + ORR1D1 LTR MaLR 1 370 -4 4 728 258 203 32 29 chr4 18835969 18836049 -136794071 + B4A SINE B4 10 86 -206 4 728 272 104 41 69 chr4 18836211 18836356 -136793764 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 4 728 306 0 0 0 chr4 18836357 18836391 -136793729 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 728 245 391 11 0 chr4 18836969 18837061 -136793059 + MLT1J-int LTR MaLR 845 937 -450 4 728 738 84 0 0 chr4 18837116 18837223 -136792897 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 4 728 445 156 0 0 chr4 18837707 18837797 -136792323 + Lx4A LINE L1 6968 7057 -1 4 728 29 0 0 0 chr4 18837797 18837826 -136792294 + AT_rich Low_complexity Low_complexity 1 29 0 5 728 189 0 0 0 chr4 18838202 18838223 -136791897 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 728 1046 281 21 84 chr4 18838228 18838465 -136791655 - Lx6 LINE L1 -27 7433 7207 5 728 1820 76 4 19 chr4 18838465 18838721 -136791399 + L1_Mus1 LINE L1 6316 6567 0 5 728 1046 281 21 84 chr4 18838721 18838864 -136791256 - Lx6 LINE L1 -254 7206 7077 5 728 273 381 51 22 chr4 18838944 18839081 -136791039 + MER76 LTR ERVL 58 198 -493 5 728 28 0 0 0 chr4 18839175 18839203 -136790917 + AT_rich Low_complexity Low_complexity 1 28 0 5 728 383 317 103 0 chr4 18839387 18839532 -136790588 - Lx8 LINE L1 -164 7309 7150 5 728 300 83 0 0 chr4 18839534 18839582 -136790538 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 728 243 0 0 0 chr4 18839589 18839616 -136790504 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 728 601 308 25 105 chr4 18839638 18840001 -136790119 - Lx8 LINE L1 -330 7143 6810 5 728 734 278 62 90 chr4 18839965 18840305 -136789815 + L1_Mur3 LINE L1 2897 3233 -2647 5 728 854 259 19 0 chr4 18840305 18840510 -136789610 + B3 SINE B2 3 211 -5 5 728 734 278 62 90 chr4 18840510 18840636 -136789484 + L1_Mur3 LINE L1 3234 3350 -2530 5 728 233 248 9 38 chr4 18840649 18840754 -136789366 + T-rich Low_complexity Low_complexity 5 106 0 5 728 1080 192 29 184 chr4 18840915 18841394 -136788726 + RMER17C LTR ERVK 1 405 -5 5 728 184 185 18 18 chr4 18841614 18841669 -136788451 + GA-rich Low_complexity Low_complexity 2 56 0 5 728 278 119 17 0 chr4 18841702 18841733 -136788387 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 5 728 576 0 0 0 chr4 18841733 18841797 -136788323 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 728 278 119 17 0 chr4 18841797 18841824 -136788296 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 5 728 236 233 120 8 chr4 18842542 18842659 -136787461 - Arthur1 DNA Tip100 -380 3567 3438 5 728 301 246 0 0 chr4 18842786 18842847 -136787273 - Arthur1 DNA Tip100 -3542 405 345 5 728 831 199 5 102 chr4 18843652 18843848 -136786272 + ORR1D1 LTR MaLR 5 181 -193 5 728 216 0 0 0 chr4 18843848 18843872 -136786248 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 728 312 342 46 20 chr4 18843886 18844038 -136786082 - HAL1-3A_ME LINE L1 -419 2439 2284 5 728 457 187 29 7 chr4 18844040 18844180 -136785940 + CT-rich Low_complexity Low_complexity 1 143 0 5 728 680 237 88 54 chr4 18844180 18844373 -136785747 + ORR1D1 LTR MaLR 172 371 -13 5 728 1929 191 18 53 chr4 18844373 18844771 -136785349 - ORR1C2 LTR MaLR 0 384 1 5 728 680 237 88 54 chr4 18844771 18844782 -136785338 + ORR1D1 LTR MaLR 372 382 -2 5 728 324 0 0 0 chr4 18846399 18846435 -136783685 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 728 21 36 0 0 chr4 18846439 18846467 -136783653 + AT_rich Low_complexity Low_complexity 1 28 0 5 728 25 0 0 0 chr4 18848862 18848887 -136781233 + AT_rich Low_complexity Low_complexity 1 25 0 5 728 3374 206 50 74 chr4 18849189 18850063 -136780057 - RMER13A LTR ERVK -5 855 3 5 728 331 331 88 132 chr4 18850243 18850515 -136779605 - MLT1A1 LTR MaLR -61 347 45 5 728 266 268 154 56 chr4 18850604 18850766 -136779354 + MLT1A1 LTR MaLR 231 408 0 5 728 243 0 0 0 chr4 18852132 18852159 -136777961 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 728 198 103 0 0 chr4 18852159 18852187 -136777933 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 728 3073 224 57 48 chr4 18852480 18853328 -136776792 - Lx7 LINE L1 -8 7688 6834 5 728 2225 269 88 13 chr4 18853323 18854012 -136776108 - Lx7 LINE L1 -1078 6618 5878 5 728 1604 251 9 120 chr4 18854017 18854222 -136775898 + L1_Mur3 LINE L1 4431 4627 -1259 5 728 255 125 0 0 chr4 18854222 18854262 -136775858 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 728 1966 213 19 49 chr4 18854262 18854544 -136775576 + L1_Mur3 LINE L1 4623 4835 -1051 5 728 420 20 0 0 chr4 18854544 18854593 -136775527 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 728 1966 199 23 23 chr4 18854593 18854864 -136775256 + L1_Mur3 LINE L1 4830 5101 -779 5 728 24 24 0 24 chr4 18854871 18854890 -136775230 + AT_rich Low_complexity Low_complexity 1 19 0 5 728 547 291 59 15 chr4 18854890 18855092 -136775028 - B3 SINE B2 -1 215 5 5 728 24 24 0 24 chr4 18855092 18855114 -136775006 + AT_rich Low_complexity Low_complexity 1 22 0 5 728 388 351 120 16 chr4 18855389 18855580 -136774540 + B4A SINE B4 11 221 -71 5 728 493 91 34 0 chr4 18855580 18855668 -136774452 + (CAAAA)n Simple_repeat Simple_repeat 5 95 0 5 728 30 103 0 0 chr4 18855873 18855980 -136774140 + AT_rich Low_complexity Low_complexity 1 107 0 5 728 842 99 43 0 chr4 18856895 18857057 -136773063 + (TC)n Simple_repeat Simple_repeat 1 169 0 5 728 240 200 13 26 chr4 18857072 18857149 -136772971 + CT-rich Low_complexity Low_complexity 2 77 0 5 728 203 194 0 0 chr4 18857169 18857205 -136772915 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 5 728 25 0 0 0 chr4 18860018 18860043 -136770077 + AT_rich Low_complexity Low_complexity 1 25 0 5 728 2632 75 0 60 chr4 18860043 18860425 -136769695 - L1_Mus2 LINE L1 -19 6547 6189 5 728 1359 299 71 26 chr4 18860565 18860906 -136769214 + Lx8 LINE L1 6391 6748 -725 5 728 359 21 21 0 chr4 18860906 18860954 -136769166 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 728 1359 295 163 21 chr4 18860954 18861447 -136768673 + Lx8 LINE L1 6749 7309 -164 5 728 2310 226 100 40 chr4 18861495 18862292 -136767828 + L1_Rod LINE L1 4366 5210 -637 5 728 1485 76 116 0 chr4 18862609 18862834 -136767286 + L1_Mus3 LINE L1 6388 6638 0 5 728 192 77 0 0 chr4 18863878 18863904 -136766216 + (A)n Simple_repeat Simple_repeat 1 26 0 5 728 25 31 0 0 chr4 18864849 18864881 -136765239 + AT_rich Low_complexity Low_complexity 1 32 0 5 728 219 368 13 69 chr4 18865112 18865237 -136764883 + L2a LINE L2 3208 3322 -104 5 728 417 291 144 11 chr4 18865237 18865411 -136764709 - B3A SINE B2 0 198 2 5 728 219 368 13 69 chr4 18865411 18865516 -136764604 + L2a LINE L2 3323 3424 -2 5 728 29 28 0 0 chr4 18865516 18865552 -136764568 + AT_rich Low_complexity Low_complexity 1 36 0 5 728 696 307 93 36 chr4 18865732 18866205 -136763915 + MER67D LTR ERV1 11 510 -4 5 728 876 117 168 7 chr4 18866663 18866818 -136763302 + B2_Mm2 SINE B2 1 180 -15 5 728 422 187 0 0 chr4 18867054 18867129 -136762991 + L1_Mur2 LINE L1 5375 5449 -428 5 728 3681 224 48 19 chr4 18867122 18867922 -136762198 + Lx5 LINE L1 6221 7043 -7 5 728 617 323 4 21 chr4 18869717 18869954 -136760166 + MER2 DNA MER2_type 112 344 -1 5 728 2778 153 106 25 chr4 18870003 18870189 -136759931 + RMER6C LTR ERVK 4 199 -491 5 728 4134 151 39 23 chr4 18870189 18870933 -136759187 - RMER6A LTR ERVK 0 756 1 5 728 2778 176 99 22 chr4 18870933 18871520 -136758600 + RMER6C LTR ERVK 198 720 0 5 728 24 32 0 0 chr4 18871613 18871644 -136758476 + AT_rich Low_complexity Low_complexity 1 31 0 5 728 371 376 20 43 chr4 18871791 18872094 -136758026 - L1MEf LINE L1 -4690 1510 1215 5 728 345 266 93 39 chr4 18872095 18872224 -136757896 + B3 SINE B2 79 214 -2 5 728 319 315 32 52 chr4 18872323 18872477 -136757643 - L1MEf LINE L1 -5440 760 610 5 728 256 326 41 20 chr4 18873243 18873390 -136756730 + L2a LINE L2 3277 3426 0 5 11 32248 88 5 13 chr4 18873688 18875299 -136754821 + L1Md_F2 LINE L1 191 1884 -4002 5 729 4394 18 0 0 chr4 18875299 18875792 -136754328 + MT2_Mm LTR ERVL 1 493 0 5 729 32248 74 2 2 chr4 18875792 18879492 -136750628 + L1Md_F2 LINE L1 1885 5589 -297 5 729 7845 58 4 1 chr4 18879492 18880485 -136749635 + L1Md_F2 LINE L1 5590 6585 0 5 729 27 0 0 0 chr4 18880665 18880692 -136749428 + AT_rich Low_complexity Low_complexity 1 27 0 5 729 4403 81 2 0 chr4 18880692 18881270 -136748850 - L1_Mus1 LINE L1 -3 6564 5986 5 729 752 113 0 0 chr4 18881270 18881385 -136748735 + L1_Mus1 LINE L1 5858 5972 -595 5 729 22 35 0 0 chr4 18881914 18881943 -136748177 + AT_rich Low_complexity Low_complexity 1 29 0 5 729 25 51 0 0 chr4 18882071 18882110 -136748010 + AT_rich Low_complexity Low_complexity 1 39 0 5 729 6920 104 18 5 chr4 18883169 18884182 -136745938 + Lx LINE L1 5611 6636 -18 5 729 525 241 27 20 chr4 18884367 18884515 -136745605 + RLTR23 LTR ERV1 279 427 -3 5 729 1057 75 0 0 chr4 18884654 18884788 -136745332 - L1Md_F2 LINE L1 -355 6227 6094 5 729 2954 51 0 5 chr4 18884788 18885163 -136744957 + L1Md_F2 LINE L1 6196 6568 -14 5 729 21 0 0 0 chr4 18885546 18885567 -136744553 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 363 96 0 0 chr4 18885570 18885622 -136744498 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 729 294 73 0 0 chr4 18885880 18885921 -136744199 + (TTAA)n Simple_repeat Simple_repeat 2 42 0 5 729 287 298 16 24 chr4 18886196 18886320 -136743800 + L1ME1 LINE L1 5145 5267 -879 5 729 794 288 38 27 chr4 18886561 18887029 -136743091 + L1ME1 LINE L1 5542 6009 -175 5 729 287 294 117 41 chr4 18887274 18887643 -136742477 + L1M5 LINE L1 3379 3775 -2371 5 729 1413 78 5 5 chr4 18887811 18888017 -136742103 + L1_Mus4 LINE L1 6417 6622 -14 5 729 21 0 0 0 chr4 18889375 18889396 -136740724 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 417 278 133 77 chr4 18890170 18890365 -136739755 + LTR16A1 LTR ERVL 250 455 -1 5 729 222 150 0 0 chr4 18892827 18892867 -136737253 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 729 285 29 0 0 chr4 18893653 18893687 -136736433 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 729 3286 46 2 0 chr4 18894285 18894680 -136735440 + MTA_Mm LTR MaLR 1 396 0 5 729 660 267 60 30 chr4 18895902 18896103 -136734017 + B3 SINE B2 2 208 -8 5 729 3055 187 40 12 chr4 18896120 18896790 -136733330 + L1_Mur3 LINE L1 3408 4096 -1784 5 729 308 296 30 22 chr4 18896822 18896957 -136733163 + Lx7 LINE L1 7561 7696 0 5 729 23 78 0 0 chr4 18897417 18897468 -136732652 + AT_rich Low_complexity Low_complexity 1 51 0 5 729 1094 311 53 74 chr4 18898552 18899441 -136730679 + Lx8 LINE L1 5639 6483 -990 5 729 249 301 124 44 chr4 18899880 18900027 -136730093 - PB1 SINE Alu -7 304 21 5 729 486 174 0 0 chr4 18900411 18900520 -136729600 + GA-rich Low_complexity Low_complexity 1 109 0 5 729 673 233 91 30 chr4 18900836 18901035 -136729085 - B3 SINE B2 -1 215 5 5 729 2078 204 95 32 chr4 18901342 18901870 -136728250 + RLTR12A LTR ERVK 3 563 -5 5 729 22 0 0 0 chr4 18902305 18902327 -136727793 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 358 43 254 28 chr4 18902444 18902502 -136727618 + BC1_Mm scRNA scRNA 2 77 -75 5 729 782 21 10 0 chr4 18902502 18902598 -136727522 + (GAAA)n Simple_repeat Simple_repeat 2 98 0 5 729 358 43 254 28 chr4 18902598 18902610 -136727510 + BC1_Mm scRNA scRNA 78 88 -64 5 729 25 0 0 0 chr4 18902610 18902635 -136727485 + AT_rich Low_complexity Low_complexity 1 25 0 5 729 255 324 26 12 chr4 18902769 18902881 -136727239 - PB1D10 SINE Alu -1 119 5 5 729 201 220 0 33 chr4 18903444 18903505 -136726615 + A-rich Low_complexity Low_complexity 2 60 0 6 729 251 368 114 48 chr4 18903992 18904343 -136725777 - L2 LINE L2 -901 2518 2145 6 729 385 297 98 11 chr4 18905299 18905483 -136724637 + B3 SINE B2 2 201 -15 6 729 23 54 0 0 chr4 18905624 18905661 -136724459 + AT_rich Low_complexity Low_complexity 1 37 0 6 729 475 277 8 8 chr4 18905891 18906011 -136724109 + ID_B1 SINE B4 103 222 -2 6 729 21 36 0 0 chr4 18906012 18906040 -136724080 + AT_rich Low_complexity Low_complexity 1 28 0 6 729 24 0 0 0 chr4 18906258 18906282 -136723838 + AT_rich Low_complexity Low_complexity 1 24 0 6 729 5309 7 0 2 chr4 18906678 18907272 -136722848 - L1Md_T LINE L1 0 6582 5990 6 729 235 200 20 0 chr4 18907819 18907869 -136722251 + MER2 DNA MER2_type 86 136 -209 6 729 289 243 14 0 chr4 18907956 18908026 -136722094 + MER2 DNA MER2_type 87 157 -188 6 729 1815 183 42 6 chr4 18908039 18908374 -136721746 + ORR1B1 LTR MaLR 41 387 -7 6 729 274 402 28 11 chr4 18908377 18908553 -136721567 + MER2 DNA MER2_type 163 341 -4 6 729 25 75 0 0 chr4 18908715 18908768 -136721352 + AT_rich Low_complexity Low_complexity 1 53 0 6 729 291 288 57 9 chr4 18909568 18909673 -136720447 + MIR3 SINE MIR 92 201 -7 6 729 6970 196 32 13 chr4 18909716 18911290 -136718830 + L1_Mur3 LINE L1 4227 5829 -51 6 729 8526 69 9 3 chr4 18911561 18912725 -136717395 - L1_Mm LINE L1 -1164 4719 3549 6 729 4048 82 16 18 chr4 18912730 18913303 -136716817 + L1Md_F2 LINE L1 6010 6581 -1 6 729 323 324 59 75 chr4 18914618 18914805 -136715315 + MTE-int LTR MaLR 367 550 -1030 6 729 286 335 92 73 chr4 18914934 18915140 -136714980 + MTE-int LTR MaLR 879 1088 -492 6 729 398 295 0 0 chr4 18915217 18915312 -136714808 - B3A SINE B2 -47 151 57 6 729 8987 3 0 0 chr4 18916263 18917363 -136712757 - L1Md_A LINE L1 0 6582 5483 6 729 1963 124 54 3 chr4 18917387 18917659 -136712461 + Lx3_Mus LINE L1 5625 5912 -1097 6 729 531 0 0 0 chr4 18917659 18917718 -136712402 + (GAA)n Simple_repeat Simple_repeat 2 60 0 6 729 1963 124 54 3 chr4 18917718 18917760 -136712360 + Lx3_Mus LINE L1 5913 5954 -1055 6 729 317 306 90 26 chr4 18917755 18918023 -136712097 + L1M5 LINE L1 4323 4607 -1539 6 729 30917 97 11 6 chr4 18919603 18924999 -136705121 + L1Md_F2 LINE L1 163 5585 -298 6 729 7270 78 10 10 chr4 18925000 18925996 -136704124 + L1Md_F2 LINE L1 5587 6582 0 6 729 429 20 0 0 chr4 18926015 18926065 -136704055 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 729 327 282 58 39 chr4 18926773 18926928 -136703192 + HAL1 LINE L1 1932 2089 -418 6 729 1262 70 6 0 chr4 18927293 18927465 -136702655 - L1_Mus2 LINE L1 -1 6565 6393 6 729 22 80 0 0 chr4 18927886 18927936 -136702184 + AT_rich Low_complexity Low_complexity 1 50 0 6 729 495 306 109 56 chr4 18928296 18928563 -136701557 + B4A SINE B4 4 284 -8 6 729 456 51 0 0 chr4 18928594 18928653 -136701467 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 729 198 0 0 0 chr4 18929265 18929287 -136700833 + (A)n Simple_repeat Simple_repeat 1 22 0 6 729 363 23 0 0 chr4 18929582 18929626 -136700494 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 6 729 267 103 0 0 chr4 18929626 18929665 -136700455 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 729 195 129 0 0 chr4 18929871 18929902 -136700218 + (T)n Simple_repeat Simple_repeat 1 31 0 6 729 2718 86 5 16 chr4 18930450 18930838 -136699282 - L1_Mus3 LINE L1 -12 6626 6243 6 729 847 77 23 23 chr4 18930838 18930971 -136699149 + L1_Mus3 LINE L1 5909 6041 -597 6 729 764 234 125 39 chr4 18930978 18931247 -136698873 - ORR1D1 LTR MaLR -5 389 5 6 729 520 215 42 45 chr4 18931256 18931460 -136698660 - ORR1D1-int LTR MaLR -5 1365 1221 6 729 574 252 45 35 chr4 18931466 18931776 -136698344 - ORR1D1 LTR MaLR -1 373 1 6 729 857 267 179 33 chr4 18931838 18932597 -136697523 + L1MA9 LINE L1 5424 6293 -19 6 729 297 0 0 0 chr4 18932629 18932662 -136697458 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 729 1696 154 126 6 chr4 18932700 18932888 -136697232 - RMER17C LTR ERVK 0 410 213 6 729 936 27 0 0 chr4 18932888 18932999 -136697121 + (GGGAGA)n Simple_repeat Simple_repeat 3 113 0 6 729 1696 154 126 6 chr4 18932999 18933176 -136696944 - RMER17C LTR ERVK -198 212 3 6 729 208 318 11 11 chr4 18933320 18933409 -136696711 + A-rich Low_complexity Low_complexity 1 89 0 6 729 1519 53 5 0 chr4 18933477 18933665 -136696455 + B2_Mm1t SINE B2 2 190 -3 6 729 1115 62 7 7 chr4 18934204 18934350 -136695770 + B1_Mus1 SINE Alu 1 146 -2 6 729 5583 93 6 63 chr4 18934513 18935399 -136694721 - L1Md_F2 LINE L1 -2 6580 5746 6 729 296 57 0 0 chr4 18935399 18935434 -136694686 + L1_Mm LINE L1 5538 5572 -311 6 729 632 278 34 34 chr4 18935690 18935869 -136694251 + B3A SINE B2 9 187 -11 6 729 259 207 33 49 chr4 18935952 18936013 -136694107 + ORR1E LTR MaLR 8 67 -292 6 729 378 202 12 37 chr4 18936010 18936092 -136694028 - ORR1E LTR MaLR -265 94 15 6 729 2345 95 124 30 chr4 18936399 18936833 -136693287 - IAPLTR2_Mm LTR ERVK 0 475 1 6 729 1553 238 144 50 chr4 18937173 18937833 -136692287 - Lx7 LINE L1 -22 7674 6953 6 729 244 138 45 30 chr4 18938374 18938441 -136691679 + T-rich Low_complexity Low_complexity 4 71 0 6 729 371 358 54 36 chr4 18938991 18939269 -136690851 + L1MEg LINE L1 594 876 -5208 6 729 438 198 58 0 chr4 18939344 18939465 -136690655 + Lx9 LINE L1 7515 7642 -2 6 729 338 319 41 8 chr4 18940034 18940277 -136689843 + L1MEg LINE L1 1432 1682 -4402 6 729 567 286 25 36 chr4 18940284 18940356 -136689764 + ID SINE ID 12 81 -143 6 729 308 304 26 86 chr4 18940356 18940507 -136689613 + B1_Mus2 SINE Alu 3 144 -3 6 729 483 18 0 0 chr4 18940578 18940634 -136689486 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 6 729 200 35 35 0 chr4 18941843 18941872 -136688248 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 729 296 24 24 0 chr4 18941890 18941931 -136688189 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 6 729 1151 252 24 7 chr4 18941961 18942249 -136687871 - MTD LTR MaLR -123 296 4 6 729 4557 91 20 1 chr4 18942285 18942497 -136687623 - L1_Mus3 LINE L1 -7 6631 6418 6 729 246 62 0 0 chr4 18942497 18942529 -136687591 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 729 4557 91 20 1 chr4 18942529 18942963 -136687157 - L1_Mus3 LINE L1 -221 6417 5974 6 729 555 303 117 9 chr4 18943276 18943734 -136686386 + L1M2 LINE L1 4382 4919 -1224 6 729 449 293 89 86 chr4 18943740 18944020 -136686100 + B4A SINE B4 6 286 -6 6 729 216 97 0 0 chr4 18944032 18944063 -136686057 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 729 22 56 0 0 chr4 18944078 18944114 -136686006 + AT_rich Low_complexity Low_complexity 1 36 0 6 729 674 308 64 13 chr4 18944117 18944568 -136685552 + L1M2 LINE L1 4916 5389 -754 6 729 231 344 163 13 chr4 18944677 18944978 -136685142 + Lx8 LINE L1 6874 7219 -254 6 729 517 294 136 13 chr4 18945384 18945683 -136684437 + MER67D LTR ERV1 176 514 0 6 729 360 0 0 0 chr4 18946737 18946777 -136683343 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 729 1765 80 4 27 chr4 18948005 18948263 -136681857 + L1Md_F2 LINE L1 6319 6570 -12 6 729 31 0 0 0 chr4 18948394 18948425 -136681695 + AT_rich Low_complexity Low_complexity 1 31 0 6 729 4015 90 2 5 chr4 18949447 18950003 -136680117 + L1_Mus4 LINE L1 6061 6614 -22 6 729 1209 311 96 24 chr4 18950634 18951168 -136678952 - MER82 DNA MER2_type -9 644 73 6 729 826 254 56 42 chr4 18951557 18951894 -136678226 - RLTR15 LTR ERVK -17 342 1 6 729 1532 76 21 21 chr4 18952306 18952548 -136677572 - L1_Mus3 LINE L1 -5 6633 6392 6 729 2281 238 38 4 chr4 18952565 18953062 -136677058 - RMER20A LTR ERVK -2 514 1 6 729 251 316 93 21 chr4 18953206 18953303 -136676817 + MLT1A1 LTR MaLR 1 104 -304 6 729 251 276 41 31 chr4 18953403 18953500 -136676620 + MLT1A1 LTR MaLR 354 451 -16 6 729 1667 105 16 4 chr4 18954697 18954955 -136675165 - L1_Mus3 LINE L1 -7 6631 6371 6 729 10874 148 24 15 chr4 18954955 18955208 -136674912 - L1_Mur1 LINE L1 -1565 4321 4074 6 729 3116 68 5 9 chr4 18955208 18955622 -136674498 + L1Md_F2 LINE L1 6149 6559 -23 6 729 351 0 0 0 chr4 18955622 18955661 -136674459 + (TAA)n Simple_repeat Simple_repeat 1 39 0 6 729 3116 68 5 9 chr4 18955661 18955674 -136674446 + L1Md_F2 LINE L1 6560 6573 -9 6 729 10874 148 24 15 chr4 18955674 18957408 -136672712 - L1_Mur1 LINE L1 -1813 4073 2316 6 729 8582 155 16 6 chr4 18957406 18959973 -136670147 + Lx2 LINE L1 4398 6995 -2 6 729 267 114 0 0 chr4 18960886 18960930 -136669190 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 6 729 227 302 69 0 chr4 18961029 18961145 -136668975 + L1ME1 LINE L1 3482 3605 -2541 6 729 708 259 7 0 chr4 18961150 18961293 -136668827 + B1_Mus1 SINE Alu 1 144 -4 6 729 427 267 77 37 chr4 18961472 18961720 -136668400 - L1M5 LINE L1 -1628 4518 4265 6 729 339 326 70 20 chr4 18962336 18962580 -136667540 + L1ME1 LINE L1 5344 5599 -580 6 729 469 330 165 38 chr4 18962670 18963167 -136666953 + RMER15 LTR ERVL 6 565 -10 6 729 346 306 0 0 chr4 18963437 18963545 -136666575 + L1ME1 LINE L1 6058 6165 -14 6 729 312 48 0 0 chr4 18963774 18963816 -136666304 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 729 291 274 204 0 chr4 18964223 18964380 -136665740 - Tigger12 DNA MER2_type -27 1932 1744 6 729 21 82 0 0 chr4 18964455 18964504 -136665616 + AT_rich Low_complexity Low_complexity 1 49 0 6 729 7637 68 4 13 chr4 18964783 18965998 -136664122 - L1_Mus1 LINE L1 -1 6566 5363 6 729 387 0 0 0 chr4 18965998 18966041 -136664079 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 729 704 89 15 0 chr4 18966041 18966154 -136663966 - B1_Mm SINE Alu -10 137 20 6 729 3874 112 3 7 chr4 18966154 18966748 -136663372 - L1_Mm LINE L1 -533 5350 4759 6 729 287 25 25 0 chr4 18966863 18966903 -136663217 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 6 729 266 219 101 47 chr4 18966921 18967050 -136663070 - L1M1 LINE L1 -712 5591 5456 6 729 337 283 154 5 chr4 18967087 18967275 -136662845 + L1MA7 LINE L1 5354 5569 -743 6 729 1282 96 43 0 chr4 18967510 18967697 -136662423 + B2_Mm2 SINE B2 1 195 0 6 729 655 269 90 58 chr4 18967805 18968149 -136661971 + L1MA7 LINE L1 5812 6166 -125 6 729 25 0 0 0 chr4 18968634 18968659 -136661461 + AT_rich Low_complexity Low_complexity 1 25 0 6 729 307 331 63 104 chr4 18969255 18969549 -136660571 - B4A SINE B4 0 292 12 6 729 374 183 0 8 chr4 18970411 18970532 -136659588 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 6 729 244 311 22 101 chr4 18970557 18970736 -136659384 - LTR33 LTR ERVL -54 461 297 6 729 261 0 0 0 chr4 18971085 18971114 -136659006 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 729 468 0 0 0 chr4 18971114 18971165 -136658955 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 729 33 73 0 0 chr4 18971415 18971483 -136658637 + AT_rich Low_complexity Low_complexity 1 68 0 7 729 23 68 0 0 chr4 18971508 18971552 -136658568 + AT_rich Low_complexity Low_complexity 1 44 0 7 729 1337 306 11 11 chr4 18971662 18972039 -136658081 + MTE2b LTR MaLR 3 379 0 7 729 6853 128 56 17 chr4 18972043 18973205 -136656915 + Lx2 LINE L1 5790 6996 -1 7 729 8890 131 29 40 chr4 18973843 18976169 -136653951 + L1VL4 LINE L1 193 2478 -1081 7 729 273 158 17 34 chr4 18976189 18976248 -136653872 + L1M1 LINE L1 5670 5727 -573 7 729 180 300 40 0 chr4 18976791 18976841 -136653279 + L2 LINE L2 1621 1672 -1747 7 729 3027 87 39 7 chr4 18977028 18977470 -136652650 + Lx3_Mus LINE L1 6554 7009 0 7 729 728 77 10 0 chr4 18979066 18979170 -136650950 + (TTC)n Simple_repeat Simple_repeat 2 106 0 7 729 2075 89 0 47 chr4 18979173 18979493 -136650627 - L1Md_F2 LINE L1 -19 6563 6259 7 729 1137 71 0 0 chr4 18980219 18980359 -136649761 + B1_Mm SINE Alu 1 140 -7 7 729 195 42 0 0 chr4 18980360 18980384 -136649736 + (TAA)n Simple_repeat Simple_repeat 1 24 0 7 729 377 360 57 83 chr4 18981112 18981412 -136648708 + MLT1E3 LTR MaLR 332 677 -3 7 729 477 240 27 0 chr4 18981532 18981678 -136648442 + Lx9 LINE L1 7484 7633 -11 7 729 23 78 0 0 chr4 18982514 18982565 -136647555 + AT_rich Low_complexity Low_complexity 1 51 0 7 729 385 296 18 18 chr4 18982727 18982837 -136647283 + RLTR41 LTR ERV1 308 417 -29 7 729 2715 186 51 45 chr4 18982851 18983494 -136646626 + L1Md_F LINE L1 590 1236 -5380 7 729 4513 123 20 0 chr4 18983460 18984213 -136645907 + MusHAL1 LINE L1 1 768 -1944 7 729 10481 112 12 2 chr4 18984210 18985818 -136644302 + L1Md_F LINE L1 3688 5311 -572 7 729 16066 110 15 42 chr4 18985800 18988525 -136641595 + L1_Mur1 LINE L1 2038 4688 -1198 7 729 35928 36 2 8 chr4 18988517 18993707 -136636413 + L1Md_A LINE L1 433 5585 -298 7 729 8330 38 0 0 chr4 18993708 18994704 -136635416 + L1Md_A LINE L1 5587 6582 0 7 729 7895 33 0 1 chr4 18994724 18995664 -136634456 + L1Md_T LINE L1 4648 5586 -297 7 729 8113 42 8 0 chr4 18995664 18996651 -136633469 + L1Md_T LINE L1 5587 6581 -1 7 729 8241 96 19 26 chr4 18996661 18997298 -136632822 + Lx3A LINE L1 4629 5270 -616 7 729 237 33 0 0 chr4 18997298 18997328 -136632792 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 729 8241 96 19 26 chr4 18997328 18997365 -136632755 + Lx3A LINE L1 5271 5314 -572 7 729 2959 39 0 8 chr4 18997365 18997727 -136632393 + L1Md_F2 LINE L1 6223 6581 -1 7 729 8241 91 9 12 chr4 18997727 18998355 -136631765 + Lx3A LINE L1 5315 5920 -1089 7 729 941 143 12 0 chr4 18998357 18998525 -136631595 + GA-rich Low_complexity Low_complexity 3 172 0 7 729 6539 131 12 4 chr4 18998527 18999577 -136630543 + Lx3A LINE L1 5908 6966 -15 7 729 204 40 0 0 chr4 18999577 18999602 -136630518 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 7 729 648 38 0 0 chr4 18999613 18999692 -136630428 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 729 1003 40 0 0 chr4 18999874 19000000 -136630120 + L1Md_A LINE L1 225 350 -6374 7 729 38373 6 0 0 chr4 19000000 19005235 -136624885 + L1Md_A LINE L1 351 5586 -297 1 91 8982 5 0 0 chr4 19005235 19006230 -136623890 + L1Md_A LINE L1 5587 6581 -1 1 730 26 82 0 0 chr4 19006634 19006695 -136623425 + AT_rich Low_complexity Low_complexity 1 61 0 2 730 1523 260 60 32 chr4 19007689 19007885 -136622235 + L1_Rod LINE L1 805 1001 -6607 3 730 204 40 0 0 chr4 19007885 19007910 -136622210 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 730 396 0 0 0 chr4 19007911 19007955 -136622165 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 730 1523 227 53 62 chr4 19007955 19008656 -136621464 + L1_Rod LINE L1 1002 1703 -4144 3 730 206 132 19 0 chr4 19008777 19008830 -136621290 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 730 267 271 47 88 chr4 19008995 19009133 -136620987 - PB1D10 SINE Alu -3 146 1 7 730 245 301 90 26 chr4 19009321 19009511 -136620609 + MER57C2 LTR ERV1 9 228 -206 8 730 309 206 43 14 chr4 19009520 19009589 -136620531 - MTE2b LTR MaLR -5 374 304 9 730 270 161 71 230 chr4 19009623 19009662 -136620458 + RMER19C LTR ERVK 1 39 -572 1 730 1032 116 0 0 chr4 19009662 19009809 -136620311 + B1_Mus1 SINE Alu 2 148 0 1 730 270 161 71 230 chr4 19009809 19009874 -136620246 + RMER19C LTR ERVK 40 87 -524 1 730 1681 208 74 82 chr4 19009874 19010376 -136619744 - RLTR20C LTR ERVK 0 534 37 1 730 242 38 37 37 chr4 19010449 19010503 -136619617 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 730 254 193 0 34 chr4 19010700 19010759 -136619361 - RMER19C LTR ERVK 0 611 555 1 730 387 169 0 0 chr4 19010933 19011004 -136619116 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 730 27 0 0 0 chr4 19011626 19011653 -136618467 + AT_rich Low_complexity Low_complexity 1 27 0 1 730 443 218 58 29 chr4 19012162 19012299 -136617821 + Lx LINE L1 6507 6647 -7 1 730 2124 111 9 15 chr4 19012749 19013087 -136617033 - L1_Mus3 LINE L1 0 6638 6303 1 730 413 303 115 69 chr4 19013847 19014178 -136615942 + MTE2a LTR MaLR 10 391 -28 1 730 449 261 48 48 chr4 19014182 19014327 -136615793 - B1_Mur2 SINE Alu 0 149 5 2 730 459 0 0 0 chr4 19014351 19014402 -136615718 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 730 1935 100 0 3 chr4 19014412 19014694 -136615426 - Lx LINE L1 -9 6645 6365 2 730 465 299 0 7 chr4 19015505 19015650 -136614470 + MTD LTR MaLR 4 147 -272 2 730 225 0 0 0 chr4 19016307 19016332 -136613788 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 2 730 964 150 0 7 chr4 19016351 19016499 -136613621 - B1_Mus1 SINE Alu -1 147 1 2 730 28684 117 48 3 chr4 19016506 19022423 -136607697 - L1_Mus1 LINE L1 -1 6581 387 2 730 319 243 126 59 chr4 19022491 19022749 -136607371 - L1M2 LINE L1 -761 5385 5105 2 730 1269 249 129 8 chr4 19022967 19023204 -136606916 + MTD LTR MaLR 2 257 -162 2 730 2294 152 143 7 chr4 19023204 19023666 -136606454 - RLTR11A2 LTR ERVK -2 525 1 2 730 1269 249 129 8 chr4 19023666 19023800 -136606320 + MTD LTR MaLR 258 417 -2 2 730 542 250 107 13 chr4 19024380 19024530 -136605590 - ORR1D2 LTR MaLR 0 370 207 3 730 486 281 55 25 chr4 19024716 19024995 -136605125 + L1MA4 LINE L1 5635 5906 -250 3 730 30 27 0 0 chr4 19025460 19025497 -136604623 + AT_rich Low_complexity Low_complexity 1 37 0 3 730 194 163 0 39 chr4 19025586 19025637 -136604483 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 3 730 207 293 52 26 chr4 19026188 19026265 -136603855 - MIRc SINE MIR -105 163 85 3 730 664 220 6 82 chr4 19026566 19026749 -136603371 - Lx8 LINE L1 -986 6487 6319 3 730 373 51 12 71 chr4 19026833 19026918 -136603202 + (CAAAAA)n Simple_repeat Simple_repeat 2 81 0 3 730 21 0 0 0 chr4 19027115 19027136 -136602984 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 1259 217 54 97 chr4 19027880 19028253 -136601867 + ORR1C2 LTR MaLR 1 357 -17 3 730 5323 238 46 29 chr4 19028251 19029588 -136600532 + ORR1C2-int LTR MaLR 9 1368 -2 3 730 1404 194 102 44 chr4 19029592 19029954 -136600166 + ORR1C2 LTR MaLR 2 384 0 3 730 204 154 0 0 chr4 19030133 19030185 -136599935 + T-rich Low_complexity Low_complexity 1 52 0 3 730 2692 285 129 31 chr4 19030767 19031939 -136598181 - Lx8 LINE L1 -60 7413 6127 4 730 208 154 0 25 chr4 19032132 19032172 -136597948 + CT-rich Low_complexity Low_complexity 2 40 0 4 730 1586 222 30 132 chr4 19032920 19033257 -136596863 + L1_Mus3 LINE L1 5971 6258 -380 4 730 3128 58 179 5 chr4 19033257 19033693 -136596427 - RLTR1B LTR ERV1 0 512 1 4 730 1586 222 30 132 chr4 19033693 19034065 -136596055 + L1_Mus3 LINE L1 6259 6607 -31 4 730 1074 243 124 37 chr4 19034096 19034490 -136595630 - RLTR31_Mur LTR ERVK -14 539 151 4 730 2958 74 30 0 chr4 19034640 19035034 -136595086 + L1_Mus1 LINE L1 6162 6567 0 4 730 257 0 0 29 chr4 19035467 19035501 -136594619 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 4 730 232 154 0 37 chr4 19035501 19035555 -136594565 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 730 21 57 0 0 chr4 19036268 19036303 -136593817 + AT_rich Low_complexity Low_complexity 1 35 0 4 730 227 154 49 37 chr4 19036846 19036927 -136593193 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 4 730 2892 172 79 3 chr4 19036946 19037580 -136592540 + Lx2 LINE L1 6231 7004 -4 5 730 11357 145 16 8 chr4 19037575 19040845 -136589275 + Lx2 LINE L1 3694 6997 0 5 730 258 159 14 28 chr4 19040934 19041005 -136589115 + GA-rich Low_complexity Low_complexity 2 71 0 5 730 325 319 101 42 chr4 19041720 19042060 -136588060 + Lx7 LINE L1 5604 5950 -1510 5 730 233 296 12 0 chr4 19042330 19042411 -136587709 - LTR50 LTR ERVL -2 793 712 5 730 604 249 79 15 chr4 19042888 19043153 -136586967 + L1M3 LINE L1 4508 4789 -1351 5 730 2236 39 0 14 chr4 19043184 19043450 -136586670 - L1Md_F2 LINE L1 -413 6169 5905 5 730 1039 99 87 0 chr4 19043450 19043611 -136586509 + L1Md_F2 LINE L1 6396 6570 -12 5 730 2236 39 0 14 chr4 19043611 19043628 -136586492 - L1Md_F2 LINE L1 -678 5904 5891 5 730 623 295 29 86 chr4 19043635 19044054 -136586066 + L1M3 LINE L1 4852 5246 -894 5 730 325 240 79 50 chr4 19044159 19044260 -136585860 - MTD LTR MaLR -14 405 302 5 730 183 320 58 39 chr4 19044600 19044704 -136585416 - MIRb SINE MIR -88 180 75 5 730 786 298 114 24 chr4 19044909 19045494 -136584626 + Lx9 LINE L1 6957 7594 -50 6 730 623 359 85 24 chr4 19047250 19047672 -136582448 - MLT1D LTR MaLR -57 448 1 6 730 1708 85 4 4 chr4 19049787 19050024 -136580096 - Lx2A1 LINE L1 -964 6044 5808 6 730 983 175 58 0 chr4 19050026 19050197 -136579923 - Lx2A1 LINE L1 -339 5538 5358 6 730 3347 66 18 2 chr4 19050193 19050632 -136579488 + L1_Mus3 LINE L1 6160 6605 -33 6 730 429 66 0 0 chr4 19050632 19050693 -136579427 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 6 730 3492 147 31 40 chr4 19050693 19051117 -136579003 - Lx2A1 LINE L1 -514 5363 4922 6 730 1073 102 7 0 chr4 19051117 19051264 -136578856 + B1_Mus1 SINE Alu 1 148 0 6 730 3492 147 31 40 chr4 19051264 19051506 -136578614 - Lx2A1 LINE L1 -956 4921 4703 6 730 442 303 61 20 chr4 19053602 19053834 -136576286 - Lx8 LINE L1 -595 7101 6842 6 730 214 205 0 0 chr4 19054302 19054341 -136575779 + T-rich Low_complexity Low_complexity 1 39 0 6 730 255 275 54 11 chr4 19054694 19054786 -136575334 - MLT2F LTR ERVL -2 561 466 6 730 226 368 79 31 chr4 19055106 19055333 -136574787 + MLT1B LTR MaLR 1 238 -152 6 730 292 307 23 0 chr4 19055414 19055502 -136574618 + B3A SINE B2 18 107 -91 7 730 549 155 0 0 chr4 19055504 19055633 -136574487 + GA-rich Low_complexity Low_complexity 2 130 0 7 730 1318 133 14 0 chr4 19055690 19055901 -136574219 - Lx2 LINE L1 -14 6983 6770 7 730 2462 146 3 3 chr4 19055901 19056280 -136573840 - Lx2 LINE L1 -366 6631 6253 7 730 45 0 0 0 chr4 19056282 19056327 -136573793 + AT_rich Low_complexity Low_complexity 1 45 0 7 730 396 43 28 28 chr4 19057499 19057571 -136572549 + (TTTTTG)n Simple_repeat Simple_repeat 1 72 0 7 730 5767 63 62 12 chr4 19057935 19058704 -136571416 - RLTR13C2 LTR ERVK 0 808 1 7 730 216 0 0 0 chr4 19059051 19059075 -136571045 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 730 373 359 71 6 chr4 19060397 19060579 -136569541 + MTE-int LTR MaLR 1 194 -1386 7 730 1822 55 30 94 chr4 19060579 19060634 -136569486 + L1_Mus2 LINE L1 6287 6340 -226 7 730 2069 104 12 9 chr4 19060634 19060953 -136569167 - RLTR46 LTR ERVK 0 320 1 7 730 1822 55 30 94 chr4 19060953 19061196 -136568924 + L1_Mus2 LINE L1 6341 6566 0 7 730 216 0 0 0 chr4 19061234 19061258 -136568862 + (CAAGA)n Simple_repeat Simple_repeat 2 25 0 8 730 1084 34 11 49 chr4 19061259 19061443 -136568677 + (GGAAA)n Simple_repeat Simple_repeat 4 180 0 8 730 453 299 0 0 chr4 19061446 19061613 -136568507 + A-rich Low_complexity Low_complexity 14 180 0 8 730 472 156 0 72 chr4 19061626 19061820 -136568300 + GA-rich Low_complexity Low_complexity 1 180 0 8 730 939 63 22 44 chr4 19061830 19062013 -136568107 + (GAAAA)n Simple_repeat Simple_repeat 1 179 0 8 730 513 320 0 0 chr4 19062019 19062166 -136567954 + MTE-int LTR MaLR 212 358 -1222 7 730 263 171 107 67 chr4 19062441 19062516 -136567604 - MTEb LTR MaLR -20 359 282 8 730 1419 355 121 49 chr4 19062512 19063430 -136566690 + MTE-int LTR MaLR 553 1536 -44 7 730 3604 205 32 6 chr4 19063825 19064074 -136566046 - L1_Mur3 LINE L1 -903 4977 4725 8 730 186 43 0 0 chr4 19064074 19064097 -136566023 + (TACTG)n Simple_repeat Simple_repeat 3 25 0 8 730 3604 205 32 6 chr4 19064097 19064717 -136565403 - L1_Mur3 LINE L1 -1156 4724 4086 8 730 6586 113 11 16 chr4 19064715 19064795 -136565325 - L1_Mus3 LINE L1 -6 6632 6547 8 730 2409 128 9 38 chr4 19064795 19065216 -136564904 + RLTR9E LTR ERVK 1 409 0 8 730 14355 140 20 237 chr4 19065216 19067684 -136562436 - L1_Mus3 LINE L1 -92 6546 4760 8 730 345 200 0 41 chr4 19067684 19067757 -136562363 - RLTR13B1 LTR ERVK -823 70 1 9 730 14355 140 20 237 chr4 19067757 19071059 -136559061 - L1_Mus3 LINE L1 -92 4759 2369 8 730 2931 70 31 0 chr4 19071059 19071443 -136558677 - MTA_Mm LTR MaLR 0 396 1 9 730 14355 138 19 244 chr4 19071443 19072620 -136557500 - L1_Mus3 LINE L1 -3515 2368 1175 8 730 10395 79 1 4 chr4 19072620 19074767 -136555353 - L1Md_F2 LINE L1 -12 6570 4430 9 730 9294 88 4 0 chr4 19074764 19076132 -136553988 + L1Md_F2 LINE L1 3069 4441 -1442 9 730 1992 191 5 16 chr4 19076131 19076557 -136553563 - L1VL4 LINE L1 -5470 832 412 9 730 2090 73 28 16 chr4 19076592 19076910 -136553210 + RLTRETN_Mm LTR ERVK 1 322 0 9 730 17482 164 32 25 chr4 19076910 19083758 -136546362 + ETnERV2-int LTR ERVK 1 7299 -107 9 730 2090 73 28 16 chr4 19083758 19084076 -136546044 + RLTRETN_Mm LTR ERVK 1 322 0 9 730 519 227 25 25 chr4 19084157 19084315 -136545805 - L1Md_F LINE L1 -5792 727 570 9 730 3208 174 48 22 chr4 19084418 19085182 -136544938 - L1_Mur3 LINE L1 -1799 4081 3298 8 730 1855 243 9 28 chr4 19085180 19085607 -136544513 + Lx6 LINE L1 7027 7445 -15 9 730 183 348 35 35 chr4 19086068 19086184 -136543936 - MIRb SINE MIR -76 192 77 9 730 3265 231 44 21 chr4 19087311 19088155 -136541965 + RCHARR1 DNA MER1_type 112 974 0 9 730 1129 82 0 33 chr4 19088386 19088399 -136541721 - B1_Mus1 SINE Alu 0 148 140 9 730 221 57 29 0 chr4 19088399 19088434 -136541686 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 730 1129 82 0 33 chr4 19088434 19088572 -136541548 - B1_Mus1 SINE Alu -9 139 2 9 730 1693 338 41 32 chr4 19090020 19090696 -136539424 + Lx9 LINE L1 6446 7125 -519 1 730 1432 75 5 0 chr4 19090696 19090882 -136539238 - B2_Mm1t SINE B2 -5 188 2 1 730 1693 338 41 32 chr4 19090882 19091213 -136538907 + Lx9 LINE L1 7126 7461 -183 1 730 362 336 71 0 chr4 19091348 19091461 -136538659 + B4A SINE B4 84 204 -88 1 730 206 105 0 26 chr4 19092027 19092066 -136538054 + (ATTG)n Simple_repeat Simple_repeat 1 38 0 1 730 874 291 99 45 chr4 19092273 19092647 -136537473 - MTD LTR MaLR 0 379 5 1 730 5067 126 44 0 chr4 19092713 19093739 -136536381 - Lx2 LINE L1 -539 6458 5379 1 730 2022 141 12 44 chr4 19093829 19094171 -136535949 - RLTR13C1 LTR ERVK 0 983 653 1 730 29243 103 15 9 chr4 19094171 19099621 -136530499 + L1Md_F2 LINE L1 254 5586 -297 1 730 6637 118 4 7 chr4 19099621 19100619 -136529501 + L1Md_F2 LINE L1 5587 6581 -1 1 730 4268 127 9 11 chr4 19100635 19101303 -136528817 - RLTR13C1 LTR ERVK -316 667 1 1 730 563 175 43 24 chr4 19101800 19101964 -136528156 - Lx7 LINE L1 -80 7616 7450 1 730 216 0 0 0 chr4 19101973 19101997 -136528123 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 730 13214 99 79 30 chr4 19101997 19103357 -136526763 + L1MA5A LINE L1 3488 4974 -912 1 730 903 102 73 0 chr4 19103357 19103494 -136526626 + B1_Mm SINE Alu 1 147 0 1 730 13214 104 78 30 chr4 19103494 19104445 -136525675 + L1MA5A LINE L1 4975 5950 -347 1 730 898 105 20 0 chr4 19104445 19104598 -136525522 + (GGAAA)n Simple_repeat Simple_repeat 5 160 0 1 730 1307 301 50 10 chr4 19104598 19104665 -136525455 + L1MA5A LINE L1 5951 6019 -278 1 730 354 197 27 32 chr4 19104665 19104889 -136525231 + GA-rich Low_complexity Low_complexity 1 222 0 1 730 726 136 0 0 chr4 19104855 19104973 -136525147 + (GAGAA)n Simple_repeat Simple_repeat 3 120 0 1 730 3036 142 23 19 chr4 19104974 19105542 -136524578 + Lx3_Mus LINE L1 5926 6495 -514 1 730 1365 130 0 42 chr4 19105542 19105782 -136524338 + Lx3_Mus LINE L1 6741 6970 -11 1 730 2257 232 82 36 chr4 19105831 19106506 -136523614 - Lx7 LINE L1 -243 7453 6748 1 730 363 23 0 0 chr4 19106625 19106669 -136523451 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 730 759 71 10 0 chr4 19106853 19106952 -136523168 + B1_Mm SINE Alu 39 138 -9 1 730 351 0 0 0 chr4 19106952 19106991 -136523129 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 730 2235 222 66 61 chr4 19107011 19108127 -136521993 + L1Md_F LINE L1 128 1247 -5294 1 730 11187 93 4 2 chr4 19110666 19112327 -136517793 + L1Md_F2 LINE L1 3923 5586 -297 1 730 7346 79 2 6 chr4 19112327 19113315 -136516805 + L1Md_F2 LINE L1 5587 6570 -12 1 730 331 374 87 87 chr4 19113381 19113668 -136516452 + MamRep38 DNA hAT 9 295 0 1 730 1489 212 25 74 chr4 19113872 19114316 -136515804 + Lx6 LINE L1 5587 6008 -1452 1 730 316 261 64 44 chr4 19115225 19115347 -136514773 - B3 SINE B2 0 198 65 1 730 4649 101 4 52 chr4 19115678 19117217 -136512903 + L1Md_F2 LINE L1 389 1850 -4033 1 730 33728 36 0 0 chr4 19117209 19122779 -136507341 + L1Md_T LINE L1 1 5589 -297 1 730 9014 6 0 0 chr4 19122779 19123775 -136506345 + L1Md_T LINE L1 5590 6585 0 1 730 27662 65 0 1 chr4 19123792 19127557 -136502563 + L1Md_F2 LINE L1 1824 5586 -297 1 730 7968 56 1 0 chr4 19127557 19128539 -136501581 + L1Md_F2 LINE L1 5587 6569 -13 1 730 30 27 0 0 chr4 19128539 19128576 -136501544 + AT_rich Low_complexity Low_complexity 1 37 0 1 730 585 333 79 11 chr4 19128853 19129120 -136501000 + B4A SINE B4 6 290 -2 1 730 690 275 61 11 chr4 19131490 19131670 -136498450 + B3 SINE B2 2 190 -26 1 730 975 117 0 0 chr4 19131672 19131852 -136498268 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 730 208 338 74 27 chr4 19132053 19132202 -136497918 - MIRb SINE MIR -110 158 3 1 730 205 313 36 0 chr4 19132323 19132406 -136497714 - L3 LINE CR1 -255 4234 4149 1 730 1386 186 12 19 chr4 19133044 19133302 -136496818 + RLTR14 LTR ERV1 3 258 -124 1 730 2449 102 14 3 chr4 19133313 19133675 -136496445 - Lx LINE L1 -2 6652 6287 1 730 232 186 47 0 chr4 19133675 19133718 -136496402 + RLTR14 LTR ERV1 338 382 0 1 730 413 371 49 66 chr4 19134223 19134509 -136495611 + B4 SINE B4 6 286 -6 1 730 294 50 0 0 chr4 19134516 19134556 -136495564 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 1 730 459 78 0 0 chr4 19134556 19134619 -136495501 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 730 917 136 11 11 chr4 19135046 19135225 -136494895 + GA-rich Low_complexity Low_complexity 1 179 0 1 730 237 237 0 0 chr4 19135239 19135298 -136494822 + GA-rich Low_complexity Low_complexity 4 62 0 1 730 336 316 14 54 chr4 19135303 19135347 -136494773 + Lx8 LINE L1 7118 7160 -313 1 730 3937 69 10 4 chr4 19135347 19135856 -136494264 + RLTR1B LTR ERV1 1 512 0 1 730 336 316 14 54 chr4 19135856 19135958 -136494162 + Lx8 LINE L1 7161 7258 -215 1 730 985 111 0 0 chr4 19135952 19136096 -136494024 - Lx4A LINE L1 -685 6373 6230 1 730 284 70 93 0 chr4 19136097 19136140 -136493980 - BGLII LTR ERVK 0 421 375 1 730 1724 66 0 20 chr4 19136139 19136386 -136493734 - BGLII LTR ERVK -178 243 2 1 91 2820 140 14 8 chr4 19136386 19136883 -136493237 - Lx4A LINE L1 -828 6230 5731 1 731 3176 147 16 2 chr4 19136883 19137395 -136492725 + Lx4A LINE L1 6535 7053 -5 1 731 249 33 0 0 chr4 19137395 19137425 -136492695 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1 731 284 358 44 10 chr4 19137425 19137631 -136492489 + Lx8 LINE L1 7246 7458 -15 1 731 935 245 14 0 chr4 19137650 19137858 -136492262 - B3 SINE B2 -4 212 2 1 731 229 314 134 108 chr4 19139156 19139388 -136490732 + Tigger5 DNA MER2_type 2 239 -2167 1 731 346 287 11 0 chr4 19139386 19139473 -136490647 + Tigger5 DNA MER2_type 2319 2406 0 1 731 4243 58 0 2 chr4 19140062 19140594 -136489526 - L1Md_F2 LINE L1 -4 6578 6048 1 731 2764 90 28 3 chr4 19140602 19140991 -136489129 + L1_Mus1 LINE L1 6168 6566 -1 1 731 3861 74 16 0 chr4 19141316 19141819 -136488301 - L1_Mus1 LINE L1 0 6567 6057 1 731 599 61 0 0 chr4 19141820 19141902 -136488218 + L1_Mus1 LINE L1 5997 6078 -489 1 731 234 328 0 15 chr4 19142216 19142281 -136487839 - PB1D9 SINE Alu -55 65 2 1 731 958 304 19 9 chr4 19142528 19142853 -136487267 + Lx7 LINE L1 6930 7257 -439 1 731 817 286 18 41 chr4 19143254 19143473 -136486647 - B3 SINE B2 -2 214 1 1 731 568 312 53 19 chr4 19144621 19144830 -136485290 - B4A SINE B4 -66 226 11 1 731 214 257 81 54 chr4 19144764 19144838 -136485282 - B2_Mm1t SINE B2 -115 78 3 1 731 11195 173 22 23 chr4 19145269 19145451 -136484669 - L1_Mur2 LINE L1 -577 5300 5136 1 731 1158 82 0 0 chr4 19145451 19145598 -136484522 - B1_Mm SINE Alu 0 147 1 1 731 11195 173 22 23 chr4 19145598 19147823 -136482297 - L1_Mur2 LINE L1 -742 5135 2896 1 731 1759 280 38 15 chr4 19147818 19148366 -136481754 - Lx5 LINE L1 -35 7015 6455 1 731 205 172 17 33 chr4 19148403 19148463 -136481657 + T-rich Low_complexity Low_complexity 5 63 0 1 731 1122 259 65 30 chr4 19148471 19148971 -136481149 - Lx5 LINE L1 -733 6727 5980 1 731 469 267 118 52 chr4 19150735 19150974 -136479146 - MTD LTR MaLR -21 398 151 1 731 397 296 45 25 chr4 19151611 19151812 -136478308 - Lx8 LINE L1 -1059 6414 6210 1 731 333 0 0 0 chr4 19151831 19151868 -136478252 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 731 228 258 48 58 chr4 19151956 19152059 -136478061 - Lx8 LINE L1 -1500 5973 5872 1 731 438 283 152 36 chr4 19152204 19152360 -136477760 + B3 SINE B2 8 185 -31 1 731 182 65 65 0 chr4 19152360 19152391 -136477729 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 1 731 904 244 50 120 chr4 19153067 19153267 -136476853 + Lx3_Mus LINE L1 6 188 -6796 1 731 3405 23 5 5 chr4 19153267 19153663 -136476457 - MTA_Mm LTR MaLR 0 396 1 1 731 30156 103 39 15 chr4 19153663 19156533 -136473587 + Lx3_Mus LINE L1 189 3427 -2459 1 731 3058 55 39 0 chr4 19156533 19156914 -136473206 - MTA_Mm LTR MaLR 0 396 1 1 731 6406 91 91 7 chr4 19156914 19157925 -136472195 - MTA_Mm-int LTR MaLR 0 1098 3 1 731 2872 47 88 0 chr4 19157927 19158291 -136471829 - MTA_Mm LTR MaLR 0 396 1 1 731 30156 88 16 13 chr4 19158291 19161905 -136468215 + Lx3_Mus LINE L1 3428 7009 0 1 731 1664 136 112 10 chr4 19162213 19162524 -136467596 + IAPLTR4 LTR ERVK 1 343 -2 1 731 22 35 0 0 chr4 19162551 19162580 -136467540 + AT_rich Low_complexity Low_complexity 1 29 0 1 731 4891 51 2 0 chr4 19162959 19163545 -136466575 + LTRIS_Mus LTR ERV1 1 587 0 1 731 359 344 38 0 chr4 19163850 19164007 -136466113 + RSINE1 SINE B4 3 165 0 1 731 303 28 0 0 chr4 19164828 19164864 -136465256 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 731 22 99 0 0 chr4 19165271 19165342 -136464778 + AT_rich Low_complexity Low_complexity 1 71 0 1 731 877 16 0 32 chr4 19165522 19165648 -136464472 - L1Md_F3 LINE L1 -9 6575 6454 1 731 1856 73 16 0 chr4 19165872 19166120 -136464000 + L1_Mus1 LINE L1 6315 6566 -1 1 731 47 19 0 0 chr4 19166383 19166437 -136463683 + AT_rich Low_complexity Low_complexity 1 54 0 1 731 276 30 0 0 chr4 19167773 19167806 -136462314 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 731 21 0 0 0 chr4 19167967 19167988 -136462132 + AT_rich Low_complexity Low_complexity 1 21 0 1 731 1980 65 86 4 chr4 19168067 19168345 -136461775 - L1_Mus4 LINE L1 -6 6630 6330 1 731 495 0 0 0 chr4 19169276 19169331 -136460789 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 731 430 387 52 50 chr4 19169708 19170149 -136459971 + LTR33B LTR ERVL 52 493 -10 1 731 531 0 0 0 chr4 19170420 19170479 -136459641 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 731 1221 99 21 5 chr4 19170784 19170976 -136459144 + L1Md_F2 LINE L1 6387 6581 -1 1 731 378 0 0 0 chr4 19170985 19171027 -136459093 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1 731 258 32 0 0 chr4 19171914 19171945 -136458175 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 731 582 15 0 0 chr4 19171945 19172011 -136458109 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 731 24 0 0 0 chr4 19172780 19172804 -136457316 + AT_rich Low_complexity Low_complexity 1 24 0 1 731 3272 67 0 5 chr4 19173566 19174000 -136456120 + L1Md_F2 LINE L1 6151 6582 0 1 731 448 307 24 0 chr4 19174067 19174194 -136455926 + RSINE1 SINE B4 7 136 -29 1 731 207 0 0 0 chr4 19174206 19174229 -136455891 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 731 249 108 0 0 chr4 19174388 19174425 -136455695 + (A)n Simple_repeat Simple_repeat 1 37 0 1 731 1328 300 67 37 chr4 19174439 19174899 -136455221 - LTR33B LTR ERVL -29 474 1 1 731 273 367 74 16 chr4 19175710 19175832 -136454288 + RSINE1 SINE B4 5 133 -32 1 731 326 23 23 0 chr4 19175851 19175894 -136454226 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 731 28 0 0 0 chr4 19175895 19175923 -136454197 + AT_rich Low_complexity Low_complexity 1 28 0 1 731 608 329 188 28 chr4 19176513 19176913 -136453207 + MLT1D LTR MaLR 35 498 -7 1 731 347 212 94 0 chr4 19177078 19177108 -136453012 + ORR1C1 LTR MaLR 290 322 -62 1 731 417 116 0 0 chr4 19177108 19177177 -136452943 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 731 378 123 5 0 chr4 19177177 19177231 -136452889 + ORR1C1 LTR MaLR 323 381 -3 1 731 3905 156 33 4 chr4 19177315 19178041 -136452079 + L1_Mur2 LINE L1 4324 5070 -807 1 731 239 281 15 15 chr4 19178040 19178105 -136452015 + L1_Rod LINE L1 2684 2748 -3099 2 731 207 0 0 0 chr4 19178106 19178129 -136451991 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 731 618 276 141 32 chr4 19178167 19178444 -136451676 + Lx8 LINE L1 6688 6994 -479 2 731 321 299 9 76 chr4 19179003 19179108 -136451012 + B1F1 SINE Alu 7 104 -45 2 731 383 342 98 46 chr4 19179122 19179428 -136450692 + Kanga1a DNA Tc2 428 749 -5 2 731 581 0 14 0 chr4 19179588 19179657 -136450463 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2 731 413 105 0 0 chr4 19180051 19180127 -136449993 - L1Md_F2 LINE L1 0 6582 6507 2 731 225 0 0 0 chr4 19180396 19180421 -136449699 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 731 513 315 33 11 chr4 19180865 19181048 -136449072 - MER5A DNA MER1_type 0 189 3 2 731 22 0 0 0 chr4 19181824 19181846 -136448274 + AT_rich Low_complexity Low_complexity 1 22 0 2 731 195 42 0 0 chr4 19182280 19182304 -136447816 + (CATATA)n Simple_repeat Simple_repeat 6 29 0 2 731 880 231 176 3 chr4 19183055 19183350 -136446770 - Lx9 LINE L1 -47 7597 7252 2 731 488 163 0 11 chr4 19183343 19183430 -136446690 + Lx9 LINE L1 6969 7054 -590 2 731 2099 199 7 12 chr4 19183423 19183836 -136446284 + Lx9 LINE L1 6745 7155 -489 2 731 849 215 0 0 chr4 19184545 19184694 -136445426 + B1_Mur4 SINE Alu 2 150 0 2 731 246 238 148 0 chr4 19184896 19184997 -136445123 + L1_Rod LINE L1 2069 2184 -3663 2 731 34 20 0 19 chr4 19185094 19185132 -136444988 + AT_rich Low_complexity Low_complexity 1 38 0 2 731 1100 89 0 0 chr4 19185132 19185278 -136444842 - B1_Mus2 SINE Alu 0 147 2 2 731 34 20 0 19 chr4 19185278 19185291 -136444829 + AT_rich Low_complexity Low_complexity 1 13 0 2 731 357 282 0 0 chr4 19185313 19185416 -136444704 + L1_Rod LINE L1 2177 2279 -3601 2 731 392 284 40 7 chr4 19185404 19185553 -136444567 + L1M2 LINE L1 4835 4988 -1155 2 731 527 292 60 33 chr4 19185746 19186183 -136443937 + L1_Rod LINE L1 4954 5407 -473 2 731 6251 125 17 8 chr4 19187860 19188837 -136441283 - Lx LINE L1 -6 6648 5663 2 731 9357 90 17 7 chr4 19188835 19190864 -136439256 + L1_Mus1 LINE L1 4529 6567 0 2 731 18520 152 163 11 chr4 19191040 19192080 -136438040 - L1VL2 LINE L1 -216 5670 4635 2 731 239 0 32 0 chr4 19192080 19192111 -136438009 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2 731 18520 161 137 27 chr4 19192111 19195538 -136434582 - L1VL2 LINE L1 -1252 4634 210 2 731 614 86 0 0 chr4 19195537 19195630 -136434490 - MusHAL1 LINE L1 -2193 519 427 2 731 182 118 29 0 chr4 19195647 19195681 -136434439 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 2 731 895 157 14 43 chr4 19195687 19195894 -136434226 - Lx LINE L1 -12 6642 6442 2 731 21 36 0 0 chr4 19197041 19197069 -136433051 + AT_rich Low_complexity Low_complexity 1 28 0 2 731 465 120 0 0 chr4 19197433 19197525 -136432595 + (TC)n Simple_repeat Simple_repeat 1 92 0 2 731 209 196 0 38 chr4 19198063 19198098 -136432022 + T-rich Low_complexity Low_complexity 18 51 0 2 731 7001 141 11 32 chr4 19198098 19198795 -136431325 - Lx3A LINE L1 -8 6973 6288 2 731 2934 78 2 8 chr4 19198795 19199193 -136430927 - MTA_Mm LTR MaLR 0 396 1 2 731 7001 141 11 32 chr4 19199193 19199711 -136430409 - Lx3A LINE L1 -694 6287 5783 2 731 209 196 0 38 chr4 19199711 19199728 -136430392 + T-rich Low_complexity Low_complexity 1 17 0 2 731 32285 80 35 9 chr4 19199739 19205784 -136424336 - L1Md_F2 LINE L1 -2 6580 371 2 731 1079 97 0 0 chr4 19205784 19205928 -136424192 - Lx3A LINE L1 -1186 5795 5652 2 731 389 329 26 52 chr4 19206397 19206437 -136423683 + Lx8 LINE L1 6828 6863 -610 2 731 1371 39 0 0 chr4 19206437 19206615 -136423505 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 731 389 329 26 52 chr4 19206615 19206728 -136423392 + Lx8 LINE L1 6864 6977 -496 2 731 1040 261 8 12 chr4 19206725 19206966 -136423154 + Lx8 LINE L1 7091 7330 -143 2 731 624 324 71 43 chr4 19206974 19207229 -136422891 + B4A SINE B4 8 269 -23 2 731 354 45 0 0 chr4 19207230 19207274 -136422846 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 731 300 155 0 0 chr4 19207281 19207352 -136422768 + GA-rich Low_complexity Low_complexity 2 72 0 2 731 227 206 77 31 chr4 19208841 19208906 -136421214 - L1M4b LINE L1 -4929 2405 2338 2 731 222 37 0 0 chr4 19209345 19209372 -136420748 + (TAG)n Simple_repeat Simple_repeat 1 27 0 2 731 199 321 0 0 chr4 19209441 19209497 -136420623 + MIRc SINE MIR 152 207 -61 2 731 234 0 0 0 chr4 19210618 19210644 -136419476 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 731 1054 55 0 30 chr4 19210987 19211155 -136418965 + (TG)n Simple_repeat Simple_repeat 2 164 0 2 731 990 257 15 6 chr4 19211187 19211452 -136418668 - B4A SINE B4 -14 278 1 2 731 193 297 13 39 chr4 19211452 19211529 -136418591 - L2a LINE L2 -10 3416 3342 2 731 279 300 0 0 chr4 19212612 19212682 -136417438 + ID4_ SINE ID 3 72 -11 2 731 309 21 0 0 chr4 19213390 19213437 -136416683 + L1_Mus4 LINE L1 6582 6628 -8 2 731 198 0 0 0 chr4 19213452 19213474 -136416646 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 731 681 92 25 0 chr4 19213502 19213622 -136416498 + (TG)n Simple_repeat Simple_repeat 1 123 0 2 731 329 283 24 96 chr4 19213644 19213769 -136416351 - RSINE1 SINE B4 0 165 50 2 731 353 268 136 7 chr4 19213829 19213983 -136416137 - Lx8 LINE L1 -6 7467 7294 2 731 785 268 69 66 chr4 19214104 19214392 -136415728 - B4A SINE B4 -3 289 1 2 731 4036 37 6 0 chr4 19214644 19215130 -136414990 - L1Md_F3 LINE L1 -3 6581 6093 2 731 252 77 0 0 chr4 19215238 19215277 -136414843 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 2 731 652 320 76 43 chr4 19216111 19216564 -136413556 + MLT1D LTR MaLR 1 455 -12 2 731 1398 84 16 0 chr4 19216611 19216801 -136413319 + B2_Mm2 SINE B2 1 193 -2 2 731 238 214 36 0 chr4 19216922 19216978 -136413142 + MIRc SINE MIR 101 158 -110 2 731 2593 260 171 33 chr4 19217239 19218306 -136411814 - Lx9 LINE L1 -30 7614 6401 2 731 2455 226 98 23 chr4 19218590 19219332 -136410788 - L1_Rod LINE L1 -161 5686 4889 2 731 268 276 0 31 chr4 19219328 19219425 -136410695 - L1_Rod LINE L1 -3794 2053 1960 2 731 1490 241 74 92 chr4 19219466 19220511 -136409609 - L1_Rod LINE L1 -3876 1971 947 2 731 372 195 0 22 chr4 19220954 19221043 -136409077 - Lx7 LINE L1 0 7696 7610 2 731 210 194 0 0 chr4 19221068 19221130 -136408990 + A-rich Low_complexity Low_complexity 1 62 0 2 731 210 108 0 51 chr4 19221249 19221288 -136408832 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 731 610 136 70 43 chr4 19221316 19221460 -136408660 - IAPLTR2_Mm LTR ERVK 0 475 191 2 731 6065 70 13 2 chr4 19221461 19222255 -136407865 - IAPEz-int LTR ERVK -27 6454 5653 2 731 10282 84 45 73 chr4 19222250 19223956 -136406164 - IAPEz-int LTR ERVK -4781 1700 3 2 731 2012 136 135 12 chr4 19223958 19224381 -136405739 - IAPLTR2_Mm LTR ERVK 0 475 1 2 731 413 127 0 12 chr4 19224381 19224461 -136405659 - Lx3C LINE L1 -34 6942 6864 2 731 191 36 36 0 chr4 19224472 19224500 -136405620 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 731 1047 89 7 7 chr4 19224509 19224656 -136405464 - B1_Mus1 SINE Alu 0 148 2 2 731 262 181 13 40 chr4 19224912 19224987 -136405133 + T-rich Low_complexity Low_complexity 3 75 0 2 731 601 227 54 24 chr4 19224988 19225155 -136404965 - Lx7 LINE L1 -1 7695 7524 2 731 321 192 51 0 chr4 19225153 19225231 -136404889 + Lx6 LINE L1 7375 7456 -4 2 731 308 89 36 0 chr4 19225240 19225296 -136404824 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 2 731 334 340 0 0 chr4 19226180 19226327 -136403793 + GA-rich Low_complexity Low_complexity 1 147 0 2 731 23 33 0 0 chr4 19226359 19226389 -136403731 + AT_rich Low_complexity Low_complexity 1 30 0 2 731 819 93 0 0 chr4 19226531 19226649 -136403471 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 2 731 27 0 0 0 chr4 19226761 19226788 -136403332 + AT_rich Low_complexity Low_complexity 1 27 0 2 731 378 0 0 0 chr4 19227588 19227630 -136402490 + (TTTTG)n Simple_repeat Simple_repeat 5 46 0 2 731 313 284 140 18 chr4 19227801 19227990 -136402130 - MIRb SINE MIR -27 241 29 2 731 3184 109 68 2 chr4 19228235 19228739 -136401381 - Lx LINE L1 -5 6649 6113 2 731 194 265 58 46 chr4 19228884 19228971 -136401149 - L3 LINE CR1 -75 4414 4327 2 731 326 304 26 18 chr4 19229274 19229388 -136400732 - B4A SINE B4 -157 135 21 2 731 229 255 0 0 chr4 19229406 19229457 -136400663 - L3 LINE CR1 -367 4122 4072 2 731 221 77 51 0 chr4 19230062 19230101 -136400019 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 2 731 387 0 0 0 chr4 19230140 19230183 -136399937 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 731 604 286 33 26 chr4 19230192 19230343 -136399777 - B3A SINE B2 -42 156 5 2 731 709 281 19 72 chr4 19231435 19231660 -136398460 + B3A SINE B2 1 198 0 2 731 543 43 0 0 chr4 19231880 19231950 -136398170 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 731 2339 150 78 38 chr4 19232117 19232567 -136397553 - L1_Mur2 LINE L1 -75 5802 5335 2 731 306 292 12 143 chr4 19232563 19232807 -136397313 + Lx2 LINE L1 6785 6996 -1 2 731 375 41 0 0 chr4 19232920 19232969 -136397151 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 731 2906 57 5 0 chr4 19232972 19233341 -136396779 - L1Md_F2 LINE L1 -13 6569 6199 2 731 629 218 7 13 chr4 19233922 19234071 -136396049 - Lx6 LINE L1 0 7460 7313 2 731 1048 116 0 0 chr4 19234084 19234231 -136395889 + B1_Mus1 SINE Alu 2 148 0 2 731 914 90 8 0 chr4 19234231 19234365 -136395755 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 2 731 1518 22 0 0 chr4 19234365 19234543 -136395577 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 2 731 477 0 0 0 chr4 19234546 19234599 -136395521 + (GAGAA)n Simple_repeat Simple_repeat 1 53 0 2 731 2809 261 96 17 chr4 19234599 19235052 -136395068 - Lx6 LINE L1 -148 7312 6823 2 731 282 29 0 0 chr4 19235052 19235087 -136395033 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 731 1166 21 0 0 chr4 19235089 19235229 -136394891 - B1_Mm SINE Alu -6 141 2 2 731 2881 203 131 22 chr4 19235229 19235911 -136394209 - Lx6 LINE L1 -874 6822 6053 2 731 30 45 0 0 chr4 19236037 19236081 -136394039 + AT_rich Low_complexity Low_complexity 1 44 0 2 731 200 312 31 15 chr4 19237876 19237941 -136392179 - MIR SINE MIR -100 162 97 3 731 2151 173 127 100 chr4 19238125 19238826 -136391294 + RMER6D LTR ERVK 1 720 0 3 731 238 317 45 42 chr4 19238860 19239014 -136391106 + L2c LINE L2 3047 3197 -178 3 731 285 208 0 0 chr4 19239062 19239139 -136390981 + CT-rich Low_complexity Low_complexity 3 79 0 3 731 21 82 0 0 chr4 19240023 19240072 -136390048 + AT_rich Low_complexity Low_complexity 1 49 0 3 731 1399 24 0 0 chr4 19240257 19240424 -136389696 - L1Md_A LINE L1 0 6582 6416 3 731 458 313 138 54 chr4 19240478 19240738 -136389382 - MLT2B1 LTR ERVL -15 505 224 3 731 23 101 0 0 chr4 19241276 19241355 -136388765 + AT_rich Low_complexity Low_complexity 1 79 0 3 731 225 0 0 0 chr4 19242293 19242318 -136387802 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 731 477 316 22 0 chr4 19242475 19242611 -136387509 + ID_B1 SINE B4 83 221 -3 3 731 328 355 16 80 chr4 19243381 19243568 -136386552 + B3A SINE B2 2 176 -22 3 731 475 278 46 0 chr4 19243651 19243802 -136386318 + Lx5 LINE L1 6893 7050 0 3 731 916 152 102 6 chr4 19244415 19244581 -136385539 + RLTR19-int LTR ERVK 4189 4370 -1767 3 731 622 300 81 47 chr4 19244726 19245135 -136384985 + RLTR23 LTR ERV1 8 430 0 3 731 834 212 69 11 chr4 19245135 19245422 -136384698 + RMER5 LTR ERV1 68 509 -25 3 731 486 310 20 10 chr4 19245677 19245879 -136384241 + L1MC1 LINE L1 6129 6332 -1 3 731 2760 323 30 28 chr4 19246360 19247426 -136382694 + Lx8 LINE L1 6252 7319 -154 3 731 417 336 43 14 chr4 19247600 19247739 -136382381 + ID_B1 SINE B4 81 223 -1 3 731 620 292 53 48 chr4 19247747 19247934 -136382186 + B3 SINE B2 1 188 -28 3 731 207 0 0 0 chr4 19248346 19248369 -136381751 + (A)n Simple_repeat Simple_repeat 1 23 0 3 731 3037 82 17 17 chr4 19248512 19248932 -136381188 - L1_Mus1 LINE L1 0 6567 6148 3 731 5026 97 6 6 chr4 19248932 19249644 -136380476 + L1_Mm LINE L1 5172 5883 0 3 731 605 231 44 7 chr4 19251415 19251550 -136378570 + Lx7 LINE L1 6347 6486 -1210 3 731 751 223 7 7 chr4 19251639 19251788 -136378332 - B1_Mur3 SINE Alu 0 149 1 3 731 631 161 6 6 chr4 19252296 19252458 -136377662 + GA-rich Low_complexity Low_complexity 1 162 0 3 731 606 254 38 15 chr4 19252499 19252631 -136377489 - RSINE1 SINE B4 -29 136 2 3 731 189 121 0 0 chr4 19253071 19253104 -136377016 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 731 338 203 35 183 chr4 19253532 19253701 -136376419 + RMER15 LTR ERVL 1 144 -431 3 731 1013 302 54 7 chr4 19253723 19254020 -136376100 + RMER15 LTR ERVL 251 561 -14 3 731 318 335 131 54 chr4 19254046 19254267 -136375853 + L2a LINE L2 1593 1830 -1589 3 731 797 319 96 18 chr4 19254712 19255099 -136375021 - Lx8 LINE L1 -96 7377 6961 3 731 3479 64 21 4 chr4 19255306 19255790 -136374330 - RLTR44C LTR ERVK -10 492 1 3 731 574 344 125 26 chr4 19255820 19256611 -136373509 + L2a LINE L2 2476 3425 -1 3 731 423 0 0 0 chr4 19257692 19257739 -136372381 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 731 440 304 128 32 chr4 19258131 19258318 -136371802 - MLT1E2 LTR MaLR -415 212 8 3 731 279 113 0 0 chr4 19258746 19258799 -136371321 + (A)n Simple_repeat Simple_repeat 1 53 0 3 731 21 0 0 0 chr4 19260372 19260393 -136369727 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 406 216 127 32 chr4 19261482 19261640 -136368480 - Lx7 LINE L1 -77 7619 7447 3 731 991 132 6 6 chr4 19261776 19261951 -136368169 + (GGAA)n Simple_repeat Simple_repeat 1 175 0 3 731 1242 176 22 106 chr4 19261951 19262137 -136367983 - L1_Mur3 LINE L1 -2208 3672 3493 3 731 495 0 0 0 chr4 19262137 19262192 -136367928 + (CTTG)n Simple_repeat Simple_repeat 2 56 0 3 731 1242 176 22 106 chr4 19262192 19262226 -136367894 - L1_Mur3 LINE L1 -2388 3492 3474 3 731 375 23 0 0 chr4 19262226 19262270 -136367850 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 731 1242 176 22 106 chr4 19262270 19262395 -136367725 - L1_Mur3 LINE L1 -2407 3473 3354 3 731 974 60 13 38 chr4 19262413 19262570 -136367550 - L1_Mus3 LINE L1 -3 6635 6483 3 731 402 288 103 77 chr4 19262752 19262985 -136367135 + RMER2 LTR ERV1 329 567 0 3 731 8051 179 56 26 chr4 19263032 19264881 -136365239 - L1_Mur3 LINE L1 -2524 3356 1454 3 731 277 186 129 0 chr4 19264915 19264985 -136365135 - L1_Mur3 LINE L1 -7098 630 552 3 731 202 220 0 0 chr4 19265974 19266024 -136364096 + T-rich Low_complexity Low_complexity 1 50 0 3 731 433 300 59 41 chr4 19266559 19266872 -136363248 + ORR1E LTR MaLR 41 379 0 3 731 23 54 0 0 chr4 19267380 19267417 -136362703 + AT_rich Low_complexity Low_complexity 1 37 0 3 732 3861 136 88 0 chr4 19268859 19269527 -136360593 + Lx3C LINE L1 6248 6974 -2 3 732 252 382 45 19 chr4 19269630 19269785 -136360335 + MIRc SINE MIR 48 206 -62 3 732 477 148 0 0 chr4 19269988 19270069 -136360051 + (ATG)n Simple_repeat Simple_repeat 1 81 0 3 732 372 380 48 37 chr4 19270105 19270378 -136359742 + L3 LINE CR1 4012 4287 -202 3 732 881 304 72 60 chr4 19270901 19271604 -136358516 - L1MB5 LINE L1 -12 6162 5451 3 732 551 264 46 15 chr4 19272085 19272216 -136357904 - ID_B1 SINE B4 0 224 90 3 732 21 57 0 0 chr4 19272780 19272815 -136357305 + AT_rich Low_complexity Low_complexity 1 35 0 3 732 455 204 71 0 chr4 19273857 19273955 -136356165 - Lx9 LINE L1 -1100 6544 6440 3 732 457 277 30 116 chr4 19274152 19274337 -136355783 - L1MD2 LINE L1 -57 6302 6130 3 732 314 222 111 0 chr4 19274337 19274400 -136355720 - ID4 SINE ID -10 73 4 3 732 457 277 30 116 chr4 19274400 19274447 -136355673 - L1MD2 LINE L1 -230 6129 6090 3 732 245 283 32 21 chr4 19274549 19274643 -136355477 - L1M4 LINE L1 -561 5623 5529 3 732 605 238 65 73 chr4 19274774 19275191 -136354929 - L1MD2 LINE L1 -856 5503 5082 3 732 16883 72 8 6 chr4 19275191 19275651 -136354469 + L1Md_F2 LINE L1 3299 3759 -2124 3 732 1523 58 0 0 chr4 19275651 19275840 -136354280 + B2_Mm1t SINE B2 2 190 -3 3 732 16883 72 8 6 chr4 19275840 19277659 -136352461 + L1Md_F2 LINE L1 3760 5584 -299 3 732 7833 56 4 10 chr4 19277661 19278661 -136351459 + L1Md_F2 LINE L1 5587 6580 -2 3 732 442 269 0 36 chr4 19278717 19278856 -136351264 - L1MD2 LINE L1 -1102 5044 4911 3 732 546 256 76 13 chr4 19280795 19280953 -136349167 - MLT1B LTR MaLR -35 355 188 3 732 643 98 0 18 chr4 19281013 19281127 -136348993 - L1_Mus4 LINE L1 -6 6630 6519 3 732 1372 76 0 0 chr4 19281127 19281312 -136348808 + L1_Mus4 LINE L1 6258 6442 -194 3 732 290 280 99 53 chr4 19281314 19281465 -136348655 - MLT1B LTR MaLR -213 161 4 3 732 6742 82 15 9 chr4 19281703 19282637 -136347483 - Lx3_Mus LINE L1 -8 7001 6062 3 732 280 321 24 0 chr4 19282766 19282850 -136347270 + Lx8 LINE L1 7244 7329 -144 3 732 494 94 24 0 chr4 19282862 19282947 -136347173 + (CTATT)n Simple_repeat Simple_repeat 2 88 0 3 732 743 215 73 68 chr4 19282949 19283154 -136346966 - B3 SINE B2 -10 206 1 3 732 53 40 0 0 chr4 19283272 19283346 -136346774 + AT_rich Low_complexity Low_complexity 1 74 0 3 732 196 371 0 0 chr4 19284642 19284739 -136345381 + L2 LINE L2 2305 2401 -1018 3 732 305 313 78 20 chr4 19284863 19285016 -136345104 - MLT1C LTR MaLR -4 463 302 3 732 641 217 78 6 chr4 19285412 19285579 -136344541 + B2_Mm2 SINE B2 1 179 -16 3 732 285 29 0 0 chr4 19285579 19285613 -136344507 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 732 513 249 46 0 chr4 19285710 19285883 -136344237 + L1MA5 LINE L1 5781 5961 -339 3 732 352 246 223 23 chr4 19286272 19286447 -136343673 - B3 SINE B2 -5 211 2 3 732 322 50 0 0 chr4 19287238 19287278 -136342842 + ORR1B2 LTR MaLR 1 40 -327 3 732 3766 50 15 0 chr4 19287281 19287838 -136342282 + L1_Mus1 LINE L1 6088 6567 0 3 732 886 62 148 0 chr4 19287847 19287975 -136342145 + B1_Mus1 SINE Alu 2 148 0 3 732 549 80 0 0 chr4 19287980 19288055 -136342065 + (A)n Simple_repeat Simple_repeat 1 75 0 3 732 1024 222 199 4 chr4 19288055 19288150 -136341970 + ORR1B2 LTR MaLR 55 151 -216 3 732 701 23 0 11 chr4 19288150 19288238 -136341882 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 732 1024 222 199 4 chr4 19288238 19288404 -136341716 + ORR1B2 LTR MaLR 152 366 -1 3 732 588 294 24 12 chr4 19288413 19288578 -136341542 + ORR1E LTR MaLR 25 191 -168 3 732 648 221 8 0 chr4 19288672 19288799 -136341321 + B1_Mus2 SINE Alu 5 132 -15 3 732 1896 215 231 75 chr4 19288908 19289362 -136340758 + RMER1B Other Other 45 538 -528 3 732 245 51 0 25 chr4 19289362 19289402 -136340718 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 732 1896 207 157 94 chr4 19289402 19289858 -136340262 + RMER1B Other Other 539 1055 -11 3 732 390 205 0 0 chr4 19289858 19289941 -136340179 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 3 732 733 133 12 19 chr4 19289950 19290111 -136340009 + GA-rich Low_complexity Low_complexity 3 162 0 3 732 3429 30 2 0 chr4 19290138 19290532 -136339588 - MTA_Mm LTR MaLR -1 395 1 3 732 463 310 149 65 chr4 19290542 19290818 -136339302 - MLT1E2 LTR MaLR -176 451 153 3 732 407 238 0 0 chr4 19291672 19291752 -136338368 + B4 SINE B4 1 80 -212 3 732 7642 48 1 6 chr4 19291753 19292742 -136337378 - L1Md_F2 LINE L1 -12 6570 5587 3 732 21 36 0 0 chr4 19293232 19293260 -136336860 + AT_rich Low_complexity Low_complexity 1 28 0 3 732 324 48 0 0 chr4 19293968 19294010 -136336110 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 732 387 0 0 0 chr4 19294017 19294060 -136336060 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 732 620 337 35 35 chr4 19294491 19294694 -136335426 + B4A SINE B4 2 204 -88 3 732 238 233 103 37 chr4 19296189 19296296 -136333824 - Charlie5 DNA MER1_type -2508 116 3 3 732 24 32 0 0 chr4 19296829 19296860 -136333260 + AT_rich Low_complexity Low_complexity 1 31 0 3 732 27 0 0 0 chr4 19296945 19296972 -136333148 + AT_rich Low_complexity Low_complexity 1 27 0 3 732 477 148 0 0 chr4 19297073 19297154 -136332966 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 732 209 178 89 0 chr4 19297542 19297587 -136332533 - L2a LINE L2 0 3426 3378 3 732 350 359 0 19 chr4 19297906 19298011 -136332109 - RSINE1 SINE B4 0 165 63 3 732 22 70 0 0 chr4 19298236 19298279 -136331841 + AT_rich Low_complexity Low_complexity 1 43 0 3 732 1038 110 14 0 chr4 19298312 19298457 -136331663 + B1_Mus1 SINE Alu 2 148 0 3 732 212 100 0 24 chr4 19298457 19298498 -136331622 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 3 732 263 354 31 16 chr4 19298767 19298896 -136331224 + L2c LINE L2 3253 3383 -4 3 732 386 183 0 9 chr4 19299775 19299891 -136330229 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 732 825 302 87 40 chr4 19299902 19300178 -136329942 - B4A SINE B4 0 292 4 4 732 200 312 117 20 chr4 19301323 19301470 -136328650 - L2c LINE L2 -1 3386 3197 4 732 253 258 70 30 chr4 19301476 19301576 -136328544 + RSINE1 SINE B4 62 165 0 4 732 21 0 0 0 chr4 19301608 19301629 -136328491 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 387 41 0 0 chr4 19301889 19301938 -136328182 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 732 196 154 19 19 chr4 19301960 19302013 -136328107 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 4 732 26 50 0 0 chr4 19302274 19302314 -136327806 + AT_rich Low_complexity Low_complexity 1 40 0 4 732 303 28 0 0 chr4 19302866 19302902 -136327218 + (A)n Simple_repeat Simple_repeat 1 36 0 4 732 412 192 77 113 chr4 19303047 19303347 -136326773 + RMER17D2 LTR ERVK 164 452 -357 4 732 189 0 0 0 chr4 19303350 19303371 -136326749 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 732 276 30 0 0 chr4 19303371 19303404 -136326716 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 732 620 298 7 26 chr4 19303716 19303871 -136326249 - RSINE1 SINE B4 -5 160 9 4 732 560 252 32 58 chr4 19304499 19304655 -136325465 - RLTR20D LTR ERVK 0 568 417 4 732 238 56 0 27 chr4 19304657 19304694 -136325426 - RLTR20D LTR ERVK -532 36 1 4 732 22 56 0 0 chr4 19304762 19304798 -136325322 + AT_rich Low_complexity Low_complexity 1 36 0 4 732 1568 47 42 0 chr4 19304806 19305018 -136325102 - L1Md_F3 LINE L1 -1 6583 6363 4 732 701 250 0 0 chr4 19305028 19305164 -136324956 + B3A SINE B2 1 136 -62 4 732 333 0 0 0 chr4 19305164 19305201 -136324919 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 732 1009 261 54 79 chr4 19305969 19306285 -136323835 + ORR1E LTR MaLR 48 355 -4 4 732 31 0 0 0 chr4 19306719 19306750 -136323370 + AT_rich Low_complexity Low_complexity 1 31 0 4 732 719 227 57 28 chr4 19307288 19307486 -136322634 + B3 SINE B2 19 203 -13 4 732 22 0 0 0 chr4 19308583 19308605 -136321515 + AT_rich Low_complexity Low_complexity 1 22 0 4 732 535 215 28 13 chr4 19308914 19309091 -136321029 - Lx8 LINE L1 -1559 5914 5706 4 732 419 221 30 30 chr4 19309398 19309533 -136320587 + L1_Mus2 LINE L1 668 802 -5814 4 732 924 35 0 0 chr4 19309583 19309696 -136320424 - L1_Mm LINE L1 -357 5526 5414 4 732 2778 126 89 0 chr4 19309694 19310178 -136319942 + L1_Mm LINE L1 5130 5656 -227 4 732 18166 130 18 8 chr4 19310179 19313890 -136316230 + L1_Mus2 LINE L1 510 4229 -1654 4 732 33674 46 3 3 chr4 19313887 19319138 -136310982 + L1Md_T LINE L1 245 5589 -297 4 732 8268 38 6 0 chr4 19319138 19320128 -136309992 + L1Md_T LINE L1 5590 6585 0 4 732 10604 97 4 10 chr4 19320128 19322494 -136307626 + L1_Mus2 LINE L1 4216 6565 -1 4 732 1013 104 0 0 chr4 19322641 19322775 -136307345 + B1_Mus1 SINE Alu 10 143 -5 4 732 589 110 0 20 chr4 19322780 19322882 -136307238 + (GGA)n Simple_repeat Simple_repeat 3 102 0 4 732 405 0 0 0 chr4 19322885 19322930 -136307190 + (GAAAA)n Simple_repeat Simple_repeat 4 48 0 4 732 207 0 0 0 chr4 19324192 19324215 -136305905 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 732 338 0 24 0 chr4 19324215 19324256 -136305864 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 732 334 257 0 16 chr4 19324467 19324649 -136305471 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 732 180 234 0 0 chr4 19324655 19324702 -136305418 + (TATATG)n Simple_repeat Simple_repeat 6 52 0 4 732 406 266 6 6 chr4 19324713 19324891 -136305229 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 732 254 213 11 0 chr4 19324912 19325006 -136305114 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 732 279 225 8 32 chr4 19325072 19325196 -136304924 + (TATG)n Simple_repeat Simple_repeat 1 121 0 4 732 368 200 29 0 chr4 19325238 19325378 -136304742 + (TG)n Simple_repeat Simple_repeat 2 145 0 4 732 240 143 0 0 chr4 19326122 19326164 -136303956 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 732 384 22 0 0 chr4 19326164 19326209 -136303911 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 732 219 69 0 0 chr4 19326616 19326645 -136303475 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 732 261 0 0 0 chr4 19326647 19326676 -136303444 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 732 267 310 14 0 chr4 19326715 19326786 -136303334 - B4A SINE B4 -1 291 220 4 732 10282 125 16 6 chr4 19326792 19328512 -136301608 - Lx2A LINE L1 -1 7007 5278 4 732 4096 31 10 2 chr4 19328512 19329001 -136301119 - L1Md_F3 LINE L1 -2 6582 6090 4 732 10282 164 17 17 chr4 19329001 19330396 -136299724 - Lx2A LINE L1 -600 5277 3868 4 732 401 311 39 39 chr4 19330396 19330600 -136299520 - MTEa LTR MaLR -175 204 1 4 732 22 0 0 0 chr4 19330634 19330656 -136299464 + AT_rich Low_complexity Low_complexity 1 22 0 4 732 709 224 0 0 chr4 19330682 19330816 -136299304 - B1_Mur1 SINE Alu -7 142 9 4 732 375 222 139 27 chr4 19331219 19331443 -136298677 + L1M3 LINE L1 5211 5465 -838 4 732 1614 83 0 0 chr4 19331456 19331672 -136298448 - L1_Mus1 LINE L1 0 6567 6352 4 732 353 198 41 10 chr4 19331810 19331907 -136298213 - L1M1 LINE L1 -819 5484 5385 4 732 193 337 35 35 chr4 19332028 19332114 -136298006 + L4 LINE RTE 1520 1605 -424 4 732 21 0 0 0 chr4 19332741 19332762 -136297358 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 1008 294 32 85 chr4 19332864 19333266 -136296854 + Lx6 LINE L1 7056 7436 -24 4 732 21020 159 78 16 chr4 19333336 19339267 -136290853 - L1_Mus1 LINE L1 -1 6566 225 4 732 283 332 14 3 chr4 19339490 19339588 -136290532 - B4 SINE B4 -194 98 1 4 732 735 313 23 23 chr4 19339874 19340178 -136289942 - Lx7 LINE L1 -1804 5892 5589 4 732 864 281 46 18 chr4 19340449 19340775 -136289345 - Lx8 LINE L1 -152 7321 6987 4 732 1602 181 66 3 chr4 19340998 19341330 -136288790 - Lx5 LINE L1 -931 6119 5767 4 732 373 191 89 73 chr4 19341331 19341455 -136288665 + Lx4B LINE L1 6933 7058 0 4 732 485 254 26 9 chr4 19341616 19341731 -136288389 - RSINE1 SINE B4 -48 117 1 4 732 482 333 86 36 chr4 19341734 19341955 -136288165 + MLT1H1 LTR MaLR 3 234 -321 4 732 294 272 0 11 chr4 19342014 19342119 -136288001 + T-rich Low_complexity Low_complexity 1 103 0 4 732 213 216 0 0 chr4 19343138 19343175 -136286945 - B1F2 SINE Alu -50 99 63 4 732 1006 282 52 23 chr4 19343317 19343625 -136286495 - RCHARR1 DNA MER1_type -630 344 28 4 732 9488 28 0 0 chr4 19344092 19345213 -136284907 + L1_Mm LINE L1 4238 5358 -525 4 732 1100 141 40 0 chr4 19345324 19345501 -136284619 - B2_Mm2 SINE B2 -9 186 3 4 732 234 261 62 0 chr4 19345503 19345568 -136284552 - MER74A LTR ERVL -7 551 483 4 732 921 53 99 0 chr4 19345573 19345704 -136284416 - L1_Mus3 LINE L1 -644 5994 5851 4 732 2500 67 14 14 chr4 19345704 19346053 -136284067 + L1_Mus3 LINE L1 6284 6632 -6 4 732 331 311 186 51 chr4 19346150 19346424 -136283696 - MER74A LTR ERVL -231 327 17 4 732 871 183 0 0 chr4 19346775 19346917 -136283203 + B1_Mur2 SINE Alu 1 142 -7 4 732 223 265 0 0 chr4 19347008 19347057 -136283063 - MIR SINE MIR -8 254 206 4 732 470 296 9 1 chr4 19347058 19347194 -136282926 + B1F2 SINE Alu 5 141 -8 4 732 212 0 36 0 chr4 19347359 19347387 -136282733 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 4 732 10418 163 21 7 chr4 19347403 19350028 -136280092 - Lx4B LINE L1 -63 6995 4222 4 732 2200 93 118 19 chr4 19350028 19350402 -136279718 - RLTR10A LTR ERVK 0 411 1 4 732 10418 146 27 6 chr4 19350402 19350538 -136279582 - Lx4B LINE L1 -1656 4221 4087 4 732 297 152 0 0 chr4 19350542 19350588 -136279532 - L1_Mur2 LINE L1 -1612 4265 4220 4 732 2265 123 58 3 chr4 19350583 19350959 -136279161 + L1_Mur2 LINE L1 3904 4300 -1577 4 732 321 26 0 0 chr4 19353040 19353078 -136277042 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 732 245 246 22 7 chr4 19353095 19353230 -136276890 + (CA)n Simple_repeat Simple_repeat 1 137 0 4 732 349 106 0 0 chr4 19353230 19353277 -136276843 + HAL1-3A_ME LINE L1 1976 2022 -836 4 732 327 104 0 0 chr4 19353946 19353994 -136276126 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 4 732 648 264 115 35 chr4 19353995 19354195 -136275925 - B3 SINE B2 0 216 1 4 732 234 236 102 92 chr4 19354320 19354338 -136275782 + MT2B LTR ERVL 173 268 -330 4 732 303 234 143 0 chr4 19354338 19354415 -136275705 + B1_Mur1 SINE Alu 27 114 -35 4 732 540 42 0 0 chr4 19354418 19354489 -136275631 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 732 343 289 89 96 chr4 19354695 19354852 -136275268 + MIRc SINE MIR 63 218 -50 4 732 331 284 11 22 chr4 19355113 19355203 -136274917 + PB1D10 SINE Alu 21 109 -8 4 732 367 342 77 0 chr4 19355213 19355330 -136274790 + B4A SINE B4 103 228 -64 4 732 216 216 0 0 chr4 19355384 19355435 -136274685 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 4 732 22 35 0 0 chr4 19355812 19355841 -136274279 + AT_rich Low_complexity Low_complexity 1 29 0 4 732 21 0 0 0 chr4 19356157 19356178 -136273942 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 352 308 50 0 chr4 19356589 19356709 -136273411 - RMER15 LTR ERVL -114 461 336 4 732 208 346 19 29 chr4 19357232 19357336 -136272784 + L3 LINE CR1 3548 3650 -839 4 732 24 0 0 0 chr4 19357336 19357360 -136272760 + AT_rich Low_complexity Low_complexity 1 24 0 4 732 6064 172 30 17 chr4 19357926 19359232 -136270888 - Lx5 LINE L1 -1056 5994 4667 4 732 4349 177 37 48 chr4 19359224 19359465 -136270655 - Lx5 LINE L1 -3313 2567 2333 4 732 468 0 0 0 chr4 19359465 19359517 -136270603 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 732 4349 177 37 48 chr4 19359517 19359800 -136270320 - Lx5 LINE L1 -3548 2332 2059 4 732 477 0 0 0 chr4 19359800 19359853 -136270267 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 732 4349 177 37 48 chr4 19359853 19360358 -136269762 - Lx5 LINE L1 -3822 2058 1551 4 732 29253 117 16 7 chr4 19360369 19366211 -136263909 - L1_Mus2 LINE L1 0 6566 664 4 732 1865 191 14 25 chr4 19366282 19366784 -136263336 - Lx5 LINE L1 -4315 1565 1103 4 732 288 0 0 0 chr4 19366784 19366816 -136263304 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 732 1865 195 23 86 chr4 19366816 19367097 -136263023 - Lx5 LINE L1 -6626 1102 814 4 732 369 355 35 17 chr4 19367064 19367296 -136262824 - Lx5 LINE L1 -7429 299 64 4 732 229 366 72 81 chr4 19367619 19367854 -136262266 - ORR1E LTR MaLR -95 264 32 4 732 583 232 23 31 chr4 19367968 19368097 -136262023 + ID_B1 SINE B4 94 221 -3 4 732 35 41 0 0 chr4 19368407 19368456 -136261664 + AT_rich Low_complexity Low_complexity 1 49 0 5 732 381 58 0 0 chr4 19369184 19369236 -136260884 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 732 297 0 0 0 chr4 19369774 19369807 -136260313 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 732 210 71 0 0 chr4 19369924 19369952 -136260168 + (A)n Simple_repeat Simple_repeat 1 28 0 5 732 330 115 0 0 chr4 19371003 19371055 -136259065 + (TAA)n Simple_repeat Simple_repeat 3 54 0 5 732 749 217 58 11 chr4 19371094 19371265 -136258855 + MTC LTR MaLR 1 180 -241 5 732 911 182 547 3 chr4 19371265 19371439 -136258681 + ORR1C1 LTR MaLR 1 269 -115 5 732 765 33 0 0 chr4 19371439 19371531 -136258589 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 732 319 263 10 40 chr4 19371531 19371623 -136258497 + ORR1C1 LTR MaLR 270 358 -26 5 732 711 257 132 5 chr4 19371621 19371841 -136258279 + MTB LTR MaLR 152 386 -14 5 732 21 0 0 0 chr4 19372110 19372131 -136257989 + AT_rich Low_complexity Low_complexity 1 21 0 5 732 650 179 187 0 chr4 19372278 19372412 -136257708 - MTD LTR MaLR -95 324 166 5 732 324 0 0 0 chr4 19372813 19372849 -136257271 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 732 1029 72 0 0 chr4 19372849 19372987 -136257133 + (GAAAA)n Simple_repeat Simple_repeat 4 142 0 5 732 373 280 120 0 chr4 19373127 19373227 -136256893 + RSINE1 SINE B4 21 132 -33 5 732 477 0 0 0 chr4 19373233 19373286 -136256834 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 732 243 125 0 0 chr4 19373286 19373326 -136256794 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 5 732 24 0 0 0 chr4 19374108 19374132 -136255988 + AT_rich Low_complexity Low_complexity 1 24 0 5 732 1308 340 101 32 chr4 19374315 19374878 -136255242 - Tigger7 DNA MER2_type -1889 602 1 5 732 1091 361 60 40 chr4 19374947 19375167 -136254953 - MER54A LTR ERVL -67 834 624 5 732 495 0 0 0 chr4 19375167 19375222 -136254898 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 732 1091 361 60 40 chr4 19375222 19375550 -136254570 - MER54A LTR ERVL -278 623 275 5 732 426 325 32 6 chr4 19375703 19375861 -136254259 + Lx6 LINE L1 400 561 -7167 5 732 3254 200 59 17 chr4 19375839 19377028 -136253092 + Lx6 LINE L1 837 2057 -3823 5 732 414 0 0 0 chr4 19377028 19377074 -136253046 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 732 3254 198 45 13 chr4 19377074 19377096 -136253024 + Lx6 LINE L1 2058 2082 -3798 5 732 3665 129 108 66 chr4 19377113 19377593 -136252527 - Lx LINE L1 -305 6349 5853 5 732 197 33 33 0 chr4 19377593 19377623 -136252497 + (TTG)n Simple_repeat Simple_repeat 1 31 0 5 732 1057 88 0 0 chr4 19377633 19377780 -136252340 - B1_Mus1 SINE Alu 0 148 2 5 732 23782 160 34 27 chr4 19377780 19381246 -136248874 - Lx LINE L1 -31 5855 2299 5 732 1102 102 0 0 chr4 19381246 19381393 -136248727 + B1_Mus1 SINE Alu 2 148 0 5 732 23782 137 19 14 chr4 19381393 19383199 -136246921 - Lx LINE L1 -3588 2298 565 5 732 266 108 0 0 chr4 19383199 19383236 -136246884 - Lx LINE L1 -6260 397 361 5 732 13467 190 70 45 chr4 19383241 19387826 -136242294 + Lx6 LINE L1 2407 7117 -343 5 732 477 0 0 0 chr4 19387826 19387879 -136242241 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 5 732 8244 226 41 23 chr4 19387879 19388209 -136241911 + Lx6 LINE L1 7118 7456 -4 5 732 719 229 0 0 chr4 19389440 19389571 -136240549 - B1_Mur2 SINE Alu -18 131 1 5 732 280 260 140 28 chr4 19389601 19389708 -136240412 + ID_B1 SINE B4 100 218 -6 5 732 21 36 0 0 chr4 19389937 19389965 -136240155 + AT_rich Low_complexity Low_complexity 1 28 0 5 732 30 27 0 0 chr4 19390654 19390691 -136239429 + AT_rich Low_complexity Low_complexity 1 37 0 5 732 244 377 19 44 chr4 19392564 19392764 -136237356 + MIRb SINE MIR 41 241 -27 5 732 548 240 31 80 chr4 19392835 19392998 -136237122 - B3A SINE B2 0 198 44 5 732 180 0 0 0 chr4 19393142 19393162 -136236958 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 732 1260 27 0 0 chr4 19393597 19393744 -136236376 - B1_Mus1 SINE Alu 0 148 2 5 732 7573 155 53 18 chr4 19393901 19395556 -136234564 - Lx4B LINE L1 0 7058 5352 5 732 577 265 78 35 chr4 19395816 19395957 -136234163 + B3A SINE B2 4 150 -48 5 91 13895 153 31 58 chr4 19395957 19399705 -136230415 - L1_Mur2 LINE L1 -523 5357 2041 5 733 2629 123 57 21 chr4 19399686 19400111 -136230009 - Lx LINE L1 -44 6610 6171 5 733 895 62 0 0 chr4 19400111 19400223 -136229897 + Lx LINE L1 5647 5758 -896 5 733 324 100 73 24 chr4 19400219 19400301 -136229819 - L1_Mur2 LINE L1 -3789 2088 2003 5 733 30198 103 44 7 chr4 19400404 19406556 -136223564 - L1_Mus1 LINE L1 0 6567 177 5 733 364 110 123 0 chr4 19406570 19406643 -136223477 - L1_Mur2 LINE L1 -3889 1988 1907 5 733 1680 211 93 0 chr4 19406639 19407003 -136223117 - L1_Mur2 LINE L1 -6111 975 578 5 733 476 266 172 55 chr4 19407155 19407410 -136222710 + B4A SINE B4 5 289 -3 5 733 210 224 0 0 chr4 19407411 19407460 -136222660 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 5 733 22 88 0 0 chr4 19407539 19407596 -136222524 + AT_rich Low_complexity Low_complexity 1 57 0 5 733 561 345 35 25 chr4 19407882 19408167 -136221953 - B4A SINE B4 0 292 5 5 733 253 345 122 10 chr4 19409510 19409715 -136220405 + MIR SINE MIR 35 262 0 5 733 223 308 50 101 chr4 19409857 19410016 -136220104 - L2c LINE L2 0 3387 3237 5 733 434 91 0 0 chr4 19410370 19410436 -136219684 + Lx2A LINE L1 6941 7006 -2 5 733 255 301 96 0 chr4 19410465 19410538 -136219582 - 5S rRNA rRNA -33 88 9 5 733 1160 82 0 0 chr4 19410629 19410776 -136219344 + B1_Mm SINE Alu 1 147 0 5 733 197 119 24 0 chr4 19410776 19410818 -136219302 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 5 733 489 34 0 0 chr4 19410962 19411021 -136219099 + (TTA)n Simple_repeat Simple_repeat 2 60 0 5 733 900 140 227 23 chr4 19411087 19411263 -136218857 - B3 SINE B2 -4 212 1 5 733 727 201 13 0 chr4 19412427 19412744 -136217376 + GA-rich Low_complexity Low_complexity 1 321 0 5 733 202 336 98 46 chr4 19412803 19412956 -136217164 + L2c LINE L2 3103 3263 -124 5 733 400 67 53 0 chr4 19413556 19413631 -136216489 + (CAGAGA)n Simple_repeat Simple_repeat 4 82 0 5 733 2132 172 69 0 chr4 19413664 19414054 -136216066 + MTC LTR MaLR 5 421 0 5 733 239 281 173 27 chr4 19414170 19414320 -136215800 + MLT1D LTR MaLR 325 496 -9 5 733 1165 211 112 24 chr4 19415229 19415559 -136214561 - RLTR10D LTR ERVK 0 359 1 5 733 558 210 384 14 chr4 19415684 19415967 -136214153 + Lx4B LINE L1 6672 7058 0 5 733 1380 44 28 0 chr4 19416014 19416194 -136213926 - B2_Mm1a SINE B2 -7 186 2 5 733 1146 144 0 0 chr4 19417345 19417705 -136212415 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 733 645 320 50 98 chr4 19417779 19418056 -136212064 - B4A SINE B4 -26 266 3 5 733 21 0 0 0 chr4 19418495 19418516 -136211604 + AT_rich Low_complexity Low_complexity 1 21 0 5 733 286 300 0 0 chr4 19419508 19419588 -136210532 + ID4_ SINE ID 2 81 -2 5 733 940 69 54 0 chr4 19419773 19419903 -136210217 + B1_Mus2 SINE Alu 2 138 -9 5 733 195 42 0 0 chr4 19419903 19419927 -136210193 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 733 22 80 0 0 chr4 19420091 19420141 -136209979 + AT_rich Low_complexity Low_complexity 1 50 0 5 733 333 239 97 0 chr4 19420473 19420586 -136209534 - RCHARR1 DNA MER1_type 0 974 851 5 733 615 250 8 0 chr4 19420609 19420737 -136209383 - B1_Mur1 SINE Alu -6 143 15 5 733 1677 261 55 31 chr4 19421015 19421595 -136208525 - RCHARR1 DNA MER1_type -137 837 244 5 733 421 278 45 8 chr4 19421615 19421749 -136208371 - RCHARR1 DNA MER1_type -832 142 4 5 733 7283 53 1 0 chr4 19421828 19422719 -136207401 - L1_Mus1 LINE L1 0 6567 5676 5 733 3134 104 2 0 chr4 19422709 19423149 -136206971 + L1_Mus1 LINE L1 5237 5677 -206 5 733 373 304 120 102 chr4 19423149 19423365 -136206755 - MLT1A0 LTR MaLR 0 365 127 5 733 479 186 178 0 chr4 19423365 19423483 -136206637 - B1_Mur1 SINE Alu -6 143 5 5 733 373 304 120 102 chr4 19423483 19423599 -136206521 - MLT1A0 LTR MaLR -239 126 28 5 733 321 82 0 0 chr4 19423615 19423664 -136206456 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 733 1095 112 6 0 chr4 19423795 19423955 -136206165 + B2_Mm2 SINE B2 1 161 -34 5 733 243 0 0 0 chr4 19423955 19423982 -136206138 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 5 733 312 81 0 46 chr4 19424012 19424077 -136206043 + Lx5 LINE L1 6979 7040 -10 5 733 216 163 20 20 chr4 19425065 19425115 -136205005 + (TAA)n Simple_repeat Simple_repeat 2 51 0 5 733 26 30 0 0 chr4 19425145 19425178 -136204942 + AT_rich Low_complexity Low_complexity 1 33 0 5 733 211 309 30 12 chr4 19425180 19425347 -136204773 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 5 733 351 0 0 0 chr4 19425621 19425660 -136204460 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 733 413 249 54 1 chr4 19425660 19425758 -136204362 - PB1D10 SINE Alu -9 118 6 5 733 265 222 0 0 chr4 19425770 19425833 -136204287 - L1MCa LINE L1 -4301 2207 2145 5 733 262 346 28 18 chr4 19425833 19425942 -136204178 + PB1D10 SINE Alu 1 110 -7 5 733 189 0 0 0 chr4 19425949 19425970 -136204150 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 733 477 0 0 0 chr4 19426118 19426171 -136203949 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 733 745 293 48 62 chr4 19426220 19426639 -136203481 - L1MCa LINE L1 -4698 1810 1398 5 733 1239 282 180 9 chr4 19426681 19427242 -136202878 - Lx8 LINE L1 0 7473 6817 5 733 607 299 113 17 chr4 19427243 19427719 -136202401 - L1MCa LINE L1 -5132 1376 855 5 733 33 0 0 0 chr4 19428293 19428326 -136201794 + AT_rich Low_complexity Low_complexity 1 33 0 5 733 1309 85 0 16 chr4 19428333 19428524 -136201596 + L1_Mus1 LINE L1 6380 6567 0 5 733 1055 295 35 41 chr4 19428616 19428951 -136201169 - MTE2a LTR MaLR -2 377 69 5 733 5245 132 0 1 chr4 19428951 19429756 -136200364 - L1_Mm LINE L1 -394 5489 4686 5 733 4230 55 2 2 chr4 19429755 19430288 -136199832 + L1_Mus3 LINE L1 5608 6140 -498 5 733 1949 44 4 23 chr4 19430288 19430544 -136199576 + L1_Mus3 LINE L1 6317 6567 0 5 733 22 0 0 0 chr4 19430841 19430863 -136199257 + AT_rich Low_complexity Low_complexity 1 22 0 5 733 3838 61 4 2 chr4 19430863 19431354 -136198766 + L1_Mus3 LINE L1 6145 6636 -2 5 733 250 354 25 42 chr4 19431720 19431762 -136198358 + ID SINE ID 42 81 -143 5 733 342 351 0 0 chr4 19431762 19431873 -136198247 + PB1D7 SINE Alu 4 114 -6 5 733 639 153 0 35 chr4 19432003 19432145 -136197975 + Lx4A LINE L1 6920 7056 -2 5 733 333 0 0 0 chr4 19432147 19432184 -136197936 + (TTTAA)n Simple_repeat Simple_repeat 1 37 0 5 733 2743 58 0 0 chr4 19432948 19433296 -136196824 - L1_Mus1 LINE L1 -1 6566 6219 5 733 721 332 13 60 chr4 19433317 19433634 -136196486 - MER82 DNA MER2_type -301 352 51 5 733 968 274 30 69 chr4 19433688 19434021 -136196099 - ORR1E LTR MaLR -25 334 15 6 733 432 323 26 0 chr4 19434607 19434762 -136195358 + RSINE1 SINE B4 5 163 -2 6 733 484 97 11 11 chr4 19434764 19434858 -136195262 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 733 32 26 0 0 chr4 19434981 19435020 -136195100 + AT_rich Low_complexity Low_complexity 1 39 0 6 733 312 27 0 0 chr4 19435110 19435147 -136194973 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 6 733 290 236 14 0 chr4 19435243 19435315 -136194805 + GA-rich Low_complexity Low_complexity 3 75 0 6 733 1449 271 74 14 chr4 19437296 19437798 -136192322 + RMER5 LTR ERV1 3 534 0 6 733 793 131 0 24 chr4 19437946 19438071 -136192049 + B1_Mur3 SINE Alu 15 136 -13 6 733 401 258 65 0 chr4 19438071 19438164 -136191956 - Lx8 LINE L1 -483 6990 6892 6 733 828 282 36 9 chr4 19438176 19438525 -136191595 - Lx8 LINE L1 -824 6649 6260 6 733 713 245 88 0 chr4 19439212 19439404 -136190716 - B3 SINE B2 -7 209 1 6 733 387 171 0 41 chr4 19439608 19439681 -136190439 + ID4_ SINE ID 4 73 -10 6 733 564 369 37 77 chr4 19439767 19440093 -136190027 - MLT1H LTR MaLR -195 354 42 6 733 313 257 89 0 chr4 19440193 19440294 -136189826 - MER53 DNA hAT -83 110 1 6 733 423 183 0 0 chr4 19441340 19441422 -136188698 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 733 565 293 59 12 chr4 19441719 19441888 -136188232 - 7SK RNA RNA -95 236 60 6 733 1650 252 16 150 chr4 19442463 19443141 -136186979 - RLTR18 LTR ERVK -25 591 5 6 733 272 133 0 0 chr4 19443179 19443224 -136186896 - PB1D10 SINE Alu -47 70 26 6 733 580 273 46 6 chr4 19443700 19443873 -136186247 + B3A SINE B2 1 180 -18 6 733 26 30 0 0 chr4 19443890 19443923 -136186197 + AT_rich Low_complexity Low_complexity 1 33 0 6 733 409 298 160 42 chr4 19443986 19444343 -136185777 - L2 LINE L2 -2758 661 263 6 733 1254 207 136 3 chr4 19444615 19444939 -136185181 + ORR1D1 LTR MaLR 3 369 -5 6 733 621 245 43 6 chr4 19446175 19446339 -136183781 - B4A SINE B4 -122 170 1 6 733 2877 233 87 12 chr4 19447470 19448242 -136181878 + RCHARR1 DNA MER1_type 7 836 -138 6 733 695 215 90 34 chr4 19448240 19448272 -136181848 - B3A SINE B2 -6 192 157 6 733 297 0 0 0 chr4 19448272 19448305 -136181815 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 733 450 0 0 0 chr4 19448305 19448354 -136181766 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 733 695 215 90 34 chr4 19448354 19448498 -136181622 - B3A SINE B2 -42 156 6 6 733 303 210 106 121 chr4 19448501 19448642 -136181478 + RCHARR1 DNA MER1_type 836 974 0 6 733 405 244 122 0 chr4 19449394 19449525 -136180595 - B1F2 SINE Alu -1 148 2 6 733 408 310 26 0 chr4 19450515 19450628 -136179492 - B1F SINE Alu -33 116 1 6 733 228 328 87 32 chr4 19450516 19450642 -136179478 - B4A SINE B4 -89 203 71 6 733 314 151 0 54 chr4 19450699 19450755 -136179365 - B1_Mur4 SINE Alu -66 84 32 6 733 356 318 40 0 chr4 19451206 19451354 -136178766 - L1M5 LINE L1 -376 5803 5645 6 733 3713 90 11 27 chr4 19451538 19452097 -136178023 + L1_Mus3 LINE L1 6100 6638 0 6 733 203 257 100 0 chr4 19452911 19452981 -136177139 - MIRb SINE MIR -22 246 170 6 733 220 305 0 0 chr4 19453644 19453703 -136176417 + B1F SINE Alu 4 62 -87 6 733 234 292 82 20 chr4 19454245 19454343 -136175777 + PB1D10 SINE Alu 1 104 -13 6 733 3178 111 101 2 chr4 19455738 19456234 -136173886 + Lx3C LINE L1 6422 6966 -10 6 733 1031 84 111 23 chr4 19456243 19456414 -136173706 - B2_Mm2 SINE B2 -7 188 3 6 733 195 69 0 0 chr4 19456704 19456733 -136173387 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 6 733 242 268 22 109 chr4 19456770 19456862 -136173258 - RSINE1 SINE B4 -72 93 10 6 733 419 276 18 45 chr4 19456999 19457109 -136173011 - B4A SINE B4 -177 115 9 6 733 335 299 9 27 chr4 19457690 19457800 -136172320 - B1F1 SINE Alu -1 148 41 6 733 877 182 118 0 chr4 19457979 19458166 -136171954 + B3 SINE B2 8 216 0 6 733 291 28 0 0 chr4 19458793 19458829 -136171291 + (TTA)n Simple_repeat Simple_repeat 3 38 0 6 733 532 281 15 0 chr4 19459012 19459147 -136170973 + B1_Mur1 SINE Alu 2 138 -11 6 733 1189 133 16 75 chr4 19460955 19461207 -136168913 - Lx2B LINE L1 -567 6433 6197 6 733 3348 176 15 18 chr4 19461207 19461815 -136168305 + Lx2B LINE L1 6392 6997 -3 6 733 638 235 56 56 chr4 19461968 19462166 -136167954 + B3 SINE B2 4 201 -15 6 733 2194 166 8 3 chr4 19462746 19463126 -136166994 + RLTR14 LTR ERV1 1 382 0 6 733 198 333 99 8 chr4 19464551 19464672 -136165448 - MIRc SINE MIR -15 253 122 6 733 273 29 0 0 chr4 19464795 19464829 -136165291 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 733 572 216 16 23 chr4 19464894 19465022 -136165098 - B1_Mus1 SINE Alu -1 147 21 6 733 1808 197 59 31 chr4 19465207 19465595 -136164525 - MTD LTR MaLR -1 418 20 6 733 222 118 0 0 chr4 19465649 19465683 -136164437 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 6 733 185 300 108 32 chr4 19466710 19466803 -136163317 - MIRb SINE MIR -146 122 23 6 733 211 298 261 45 chr4 19466923 19467011 -136163109 + B4 SINE B4 2 108 -184 6 733 362 322 91 0 chr4 19467488 19467609 -136162511 + Tigger5 DNA MER2_type 53 184 -2222 6 733 200 97 0 31 chr4 19467701 19467733 -136162387 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 6 733 935 184 68 26 chr4 19468306 19468496 -136161624 + B3 SINE B2 5 202 -14 6 733 280 333 0 0 chr4 19468592 19468694 -136161426 + L1MC4 LINE L1 6668 6769 -1113 6 733 348 127 0 0 chr4 19468753 19468808 -136161312 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 733 1340 238 76 0 chr4 19468979 19469323 -136160797 + ORR1D2 LTR MaLR 1 370 0 6 733 363 322 67 6 chr4 19469356 19469534 -136160586 + L1MC4 LINE L1 7205 7393 -649 6 733 262 359 29 76 chr4 19469821 19469863 -136160257 - MT2B LTR ERVL -275 326 167 6 733 521 262 111 0 chr4 19469863 19469989 -136160131 - B1_Mur1 SINE Alu -9 140 1 6 733 249 57 0 0 chr4 19470112 19470147 -136159973 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 733 335 229 0 0 chr4 19470264 19470325 -136159795 + B1_Mur4 SINE Alu 83 143 -7 6 733 23 0 0 0 chr4 19470335 19470358 -136159762 + AT_rich Low_complexity Low_complexity 1 23 0 6 733 267 236 85 0 chr4 19470968 19471060 -136159060 + B1F2 SINE Alu 6 117 -3 6 733 507 278 18 120 chr4 19471063 19471288 -136158832 + B3A SINE B2 2 203 -13 6 733 510 263 112 15 chr4 19471835 19472032 -136158088 + B3 SINE B2 1 216 0 6 733 744 134 100 43 chr4 19472073 19472213 -136157907 + B1_Mur3 SINE Alu 1 148 -1 6 733 324 48 0 0 chr4 19472243 19472285 -136157835 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6 733 9851 92 5 3 chr4 19472425 19474624 -136155496 - L1_Mus1 LINE L1 0 6567 4370 6 733 3016 61 10 2 chr4 19474624 19475017 -136155103 - MTA_Mm LTR MaLR 0 396 1 6 733 7367 72 30 70 chr4 19475017 19476161 -136153959 - MTA_Mm-int LTR MaLR 0 1098 1 6 733 3179 51 5 10 chr4 19476161 19476559 -136153561 - MTA_Mm LTR MaLR 0 396 1 6 733 306 256 265 0 chr4 19476943 19477060 -136153060 + L1MC5 LINE L1 7711 7858 -103 6 733 343 264 30 40 chr4 19477117 19477238 -136152882 - B1F2 SINE Alu -4 116 2 6 733 254 271 34 0 chr4 19477879 19477938 -136152182 - ID4_ SINE ID -5 78 18 6 733 433 340 0 0 chr4 19478866 19479007 -136151113 - B1F1 SINE Alu -8 141 1 6 733 571 181 63 21 chr4 19479725 19479874 -136150246 + MTEa LTR MaLR 169 379 0 6 733 334 271 93 54 chr4 19480106 19480235 -136149885 + MTE-int LTR MaLR 389 522 -1058 6 733 1770 156 89 36 chr4 19480242 19480601 -136149519 + ORR1C1 LTR MaLR 1 378 0 6 733 425 285 34 20 chr4 19480651 19480798 -136149322 + B1F1 SINE Alu 1 149 0 6 733 180 158 0 0 chr4 19480798 19480836 -136149284 + A-rich Low_complexity Low_complexity 1 38 0 6 733 189 139 0 0 chr4 19481056 19481099 -136149021 + (A)n Simple_repeat Simple_repeat 1 43 0 6 733 518 267 105 46 chr4 19481194 19481231 -136148889 - RSINE1 SINE B4 0 165 130 6 733 6088 60 21 14 chr4 19481231 19482028 -136148092 + RLTR13B4 LTR ERVK 1 803 0 6 733 518 267 105 46 chr4 19482028 19482143 -136147977 - RSINE1 SINE B4 -36 129 4 6 733 359 269 64 9 chr4 19482279 19482388 -136147732 - B3 SINE B2 -24 192 78 6 733 342 0 0 0 chr4 19482860 19482898 -136147222 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 733 284 103 19 43 chr4 19483440 19483498 -136146622 + B1_Mm SINE Alu 88 142 -5 6 733 389 260 188 90 chr4 19483923 19484189 -136145931 - B4A SINE B4 0 292 1 6 733 22 0 0 0 chr4 19484427 19484449 -136145671 + AT_rich Low_complexity Low_complexity 1 22 0 6 733 200 231 19 0 chr4 19484921 19484973 -136145147 + A-rich Low_complexity Low_complexity 1 53 0 6 733 189 250 281 0 chr4 19485303 19485431 -136144689 + MIR SINE MIR 53 216 -46 6 733 3537 229 33 28 chr4 19485934 19486821 -136143299 + Lx5 LINE L1 6157 7047 -3 6 733 628 248 63 79 chr4 19488028 19488282 -136141838 - MTEa LTR MaLR -116 263 14 6 733 879 301 5 5 chr4 19488371 19488571 -136141549 + ID_B1 SINE B4 2 201 -23 6 733 746 246 75 0 chr4 19488810 19489009 -136141111 + Lx5 LINE L1 6836 7049 -1 6 733 29 70 0 0 chr4 19489009 19489066 -136141054 + AT_rich Low_complexity Low_complexity 1 57 0 6 733 731 205 49 24 chr4 19489187 19489392 -136140728 - B3 SINE B2 -4 212 3 6 733 574 287 122 28 chr4 19489730 19489984 -136140136 + B4 SINE B4 2 279 -13 6 733 216 250 0 0 chr4 19489996 19490040 -136140080 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 733 658 147 68 8 chr4 19490061 19490178 -136139942 + B1_Mur2 SINE Alu 25 148 -1 6 733 219 188 0 0 chr4 19490178 19490226 -136139894 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 7 733 385 326 30 44 chr4 19490477 19490612 -136139508 + ID_B1 SINE B4 77 209 -15 7 733 243 245 0 19 chr4 19490614 19490714 -136139406 + GA-rich Low_complexity Low_complexity 1 98 0 7 733 1091 45 0 25 chr4 19490738 19490944 -136139176 + L1Md_F3 LINE L1 6404 6584 0 7 733 360 278 0 0 chr4 19491634 19491706 -136138414 + B3A SINE B2 81 152 -46 7 733 498 108 0 0 chr4 19491709 19491783 -136138337 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 733 577 261 21 7 chr4 19492352 19492495 -136137625 + MTEa LTR MaLR 113 257 -122 7 733 371 189 141 40 chr4 19493027 19493126 -136136994 + PB1D10 SINE Alu 6 114 -3 7 733 205 239 43 29 chr4 19493423 19493492 -136136628 - L2a LINE L2 -9 3417 3348 7 733 616 159 79 92 chr4 19493716 19493868 -136136252 + B1_Mur4 SINE Alu 1 150 0 7 733 346 315 82 30 chr4 19493990 19494124 -136135996 + ID_B1 SINE B4 84 224 0 7 733 261 239 14 43 chr4 19494124 19494194 -136135926 + G-rich Low_complexity Low_complexity 4 71 0 7 733 283 271 237 10 chr4 19494194 19494291 -136135829 + PB1D9 SINE Alu 2 120 0 7 733 22 35 0 0 chr4 19495322 19495351 -136134769 + AT_rich Low_complexity Low_complexity 1 29 0 7 733 207 0 0 0 chr4 19495446 19495469 -136134651 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 733 624 233 9 0 chr4 19495473 19495589 -136134531 - B1_Mus2 SINE Alu -8 139 23 7 733 312 321 73 18 chr4 19496005 19496204 -136133916 - MIRb SINE MIR -12 256 44 7 733 456 244 224 11 chr4 19497480 19497613 -136132507 + B3 SINE B2 1 171 -45 7 733 447 19 0 0 chr4 19497613 19497665 -136132455 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 733 456 244 224 11 chr4 19497665 19497705 -136132415 + B3 SINE B2 172 211 -5 7 733 31 0 0 0 chr4 19497824 19497855 -136132265 + AT_rich Low_complexity Low_complexity 1 31 0 7 733 1723 295 78 27 chr4 19498181 19498923 -136131197 + Lx8 LINE L1 6492 7271 -202 7 733 244 318 139 9 chr4 19499125 19499233 -136130887 + L2a LINE L2 3042 3163 -263 7 733 273 342 0 38 chr4 19499259 19499338 -136130782 + ID4_ SINE ID 3 78 -5 7 733 568 209 69 75 chr4 19499509 19499728 -136130392 - RMER10A LTR ERVL -192 206 1 7 733 206 333 56 0 chr4 19499918 19499990 -136130130 - L2c LINE L2 -222 3165 3090 7 733 261 286 65 0 chr4 19500238 19500315 -136129805 - ID4 SINE ID 0 83 2 1 733 1172 185 24 29 chr4 19500464 19500771 -136129349 + RMER6A LTR ERVK 1 351 -405 2 733 292 283 0 0 chr4 19501514 19501574 -136128546 - B1F SINE Alu -20 129 70 3 733 736 271 31 5 chr4 19501614 19501807 -136128313 - ID_B1 SINE B4 0 224 27 4 733 271 254 16 16 chr4 19501755 19501819 -136128301 - ID4_ SINE ID -6 77 14 5 733 266 0 0 29 chr4 19502033 19502068 -136128052 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 6 733 428 289 27 34 chr4 19502732 19502879 -136127241 + B1F SINE Alu 1 146 -3 7 733 423 56 0 0 chr4 19502888 19502942 -136127178 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 8 733 375 291 72 45 chr4 19503241 19503473 -136126647 - MLT1F LTR MaLR -61 619 292 9 733 286 205 530 31 chr4 19503559 19503691 -136126429 - B3 SINE B2 -15 201 4 1 733 760 216 14 0 chr4 19504574 19504713 -136125407 - B1_Mur1 SINE Alu -8 141 1 1 733 560 237 76 41 chr4 19505000 19505145 -136124975 - RSINE1 SINE B4 -2 163 14 1 733 201 243 0 0 chr4 19505670 19505707 -136124413 + polypyrimidine Low_complexity Low_complexity 6 42 0 1 733 230 193 0 17 chr4 19505708 19505766 -136124354 + CT-rich Low_complexity Low_complexity 1 57 0 1 733 262 318 16 106 chr4 19505770 19505893 -136124227 - PB1D10 SINE Alu -5 112 1 1 733 573 270 35 35 chr4 19505893 19505970 -136124150 - ID SINE ID -145 79 3 1 733 1085 213 0 31 chr4 19506218 19506441 -136123679 + B3 SINE B2 1 216 0 1 733 237 33 0 0 chr4 19506650 19506680 -136123440 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 733 264 196 138 13 chr4 19506913 19506993 -136123127 - B1F2 SINE Alu -63 86 1 1 733 543 293 7 36 chr4 19507879 19508017 -136122103 - B4A SINE B4 -157 135 2 2 733 306 0 0 0 chr4 19508096 19508130 -136121990 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 733 421 268 80 0 chr4 19508130 19508242 -136121878 - RSINE1 SINE B4 -42 123 3 2 733 524 178 0 21 chr4 19508813 19508931 -136121189 + B1_Mur2 SINE Alu 38 145 -4 2 733 527 263 22 15 chr4 19509004 19509139 -136120981 + B1_Mur2 SINE Alu 1 136 -13 2 733 288 0 0 0 chr4 19509333 19509365 -136120755 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2 733 279 79 0 0 chr4 19509392 19509430 -136120690 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2 733 260 27 0 26 chr4 19509501 19509539 -136120581 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 733 363 172 0 0 chr4 19509539 19509603 -136120517 - B1_Mur1 SINE Alu -11 138 75 2 733 210 133 0 43 chr4 19509623 19509670 -136120450 + A-rich Low_complexity Low_complexity 5 49 0 2 733 416 225 44 18 chr4 19509690 19509803 -136120317 + PB1D9 SINE Alu 5 120 0 3 733 382 284 0 0 chr4 19510702 19510790 -136119330 + PB1D10 SINE Alu 25 112 -5 3 733 372 269 25 0 chr4 19510792 19510911 -136119209 + BC1_Mm scRNA scRNA 2 123 -29 3 733 403 233 195 17 chr4 19510987 19511105 -136119015 - B1_Mur1 SINE Alu 0 149 11 3 733 1462 173 139 6 chr4 19511142 19511474 -136118646 - ORR1C1 LTR MaLR -2 376 1 3 733 358 62 15 30 chr4 19511831 19511898 -136118222 + (TTTTTG)n Simple_repeat Simple_repeat 1 66 0 3 733 21 0 0 0 chr4 19512266 19512287 -136117833 + AT_rich Low_complexity Low_complexity 1 21 0 3 733 1688 126 123 25 chr4 19512314 19512679 -136117441 - RMER17C LTR ERVK 0 410 10 3 733 198 0 0 0 chr4 19513414 19513436 -136116684 + (CTG)n Simple_repeat Simple_repeat 2 23 0 3 733 225 0 0 0 chr4 19513438 19513463 -136116657 + (TGG)n Simple_repeat Simple_repeat 1 25 0 3 733 280 264 219 16 chr4 19513476 19513599 -136116521 - B3A SINE B2 -48 150 3 4 733 306 0 0 0 chr4 19513639 19513673 -136116447 + (CAG)n Simple_repeat Simple_repeat 2 35 0 4 733 215 31 0 30 chr4 19514123 19514156 -136115964 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 733 1042 74 44 0 chr4 19514156 19514291 -136115829 - B1_Mus2 SINE Alu -5 142 2 4 733 374 218 193 35 chr4 19516230 19516458 -136113662 - L1M4 LINE L1 -1554 4592 4329 4 733 268 261 118 0 chr4 19516918 19517037 -136113083 - L1MA4 LINE L1 -398 5902 5770 4 733 399 265 152 12 chr4 19517079 19517253 -136112867 - L1MA4 LINE L1 -512 5800 5596 4 733 396 0 0 0 chr4 19517275 19517319 -136112801 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 733 247 251 88 18 chr4 19517408 19517546 -136112574 - L1M2 LINE L1 -5046 2122 1977 4 733 453 279 97 102 chr4 19517984 19518367 -136111753 + RMER10A LTR ERVL 1 381 -61 4 733 228 86 0 0 chr4 19518367 19518402 -136111718 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 733 718 131 412 0 chr4 19518871 19519031 -136111089 - URR1A DNA MER1_type 0 226 1 5 733 22 0 0 0 chr4 19519103 19519125 -136110995 + AT_rich Low_complexity Low_complexity 1 22 0 5 733 346 251 60 138 chr4 19519126 19519343 -136110777 - RLTR25B LTR ERVK -87 941 742 5 733 427 137 288 8 chr4 19519526 19519644 -136110476 - RLTR25B LTR ERVK -170 858 708 5 733 1361 189 25 35 chr4 19519644 19519929 -136110191 - Lx2B LINE L1 0 7000 6719 5 733 359 249 198 14 chr4 19520668 19520961 -136109159 - L1M4 LINE L1 -3479 2667 2321 5 733 984 200 62 0 chr4 19520990 19521185 -136108935 + B3 SINE B2 4 210 -6 5 733 228 35 0 0 chr4 19521255 19521284 -136108836 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 733 267 342 25 0 chr4 19522385 19522464 -136107656 + AluG_3 SINE Alu 140 220 -91 5 733 1174 41 14 0 chr4 19522512 19522657 -136107463 + B1_Mus2 SINE Alu 1 147 0 5 733 640 309 67 16 chr4 19522809 19523003 -136107117 - MLT1H2 LTR MaLR -171 318 115 6 733 811 175 7 7 chr4 19523023 19523149 -136106971 + B1_Mur4 SINE Alu 11 137 -13 6 733 414 0 0 0 chr4 19523149 19523195 -136106925 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 6 733 811 175 7 7 chr4 19523195 19523206 -136106914 + B1_Mur4 SINE Alu 138 148 -2 6 733 516 249 162 0 chr4 19523813 19523998 -136106122 - B3 SINE B2 0 216 2 6 733 371 368 0 0 chr4 19524076 19524190 -136105930 - PB1D10 SINE Alu -2 115 2 6 733 366 302 0 0 chr4 19524670 19524756 -136105364 + ID SINE ID 3 88 -136 6 733 316 307 45 0 chr4 19524952 19525040 -136105080 - BC1_Mm scRNA scRNA -58 94 3 6 733 1194 54 0 0 chr4 19525598 19525745 -136104375 - B1_Mus2 SINE Alu 0 147 1 6 733 620 201 244 17 chr4 19525939 19526111 -136104009 + B3 SINE B2 1 211 -5 6 733 930 321 22 18 chr4 19526135 19526411 -136103709 + B4A SINE B4 10 286 -6 6 733 715 224 71 66 chr4 19526493 19526687 -136103433 + B3A SINE B2 9 185 -10 7 733 528 238 33 0 chr4 19526980 19527102 -136103018 + ID_B1 SINE B4 91 216 -8 6 733 264 252 82 57 chr4 19526993 19527115 -136103005 - YREP_Mm Unknown Unknown -1518 294 170 7 733 315 275 19 56 chr4 19527736 19527844 -136102276 + PB1D10 SINE Alu 9 112 -5 7 733 1565 26 10 16 chr4 19527913 19528105 -136102015 + B2_Mm1t SINE B2 1 191 -2 7 733 980 62 0 0 chr4 19528261 19528390 -136101730 + B1_Mus1 SINE Alu 20 148 0 7 733 25 0 0 0 chr4 19529032 19529057 -136101063 + AT_rich Low_complexity Low_complexity 1 25 0 7 733 630 0 0 0 chr4 19529320 19529390 -136100730 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 734 639 249 73 16 chr4 19529960 19530152 -136099968 - B3 SINE B2 -13 203 1 7 734 241 318 0 0 chr4 19530466 19530532 -136099588 + ID4_ SINE ID 5 70 -13 7 734 392 278 41 0 chr4 19530612 19530709 -136099411 - PB1D10 SINE Alu -5 112 12 7 734 323 323 21 0 chr4 19530627 19530720 -136099400 - ID_B1 SINE B4 -49 175 81 8 734 297 0 0 0 chr4 19531165 19531198 -136098922 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 734 250 339 0 82 chr4 19531532 19531654 -136098466 + PB1D10 SINE Alu 1 112 -5 8 734 243 262 88 0 chr4 19531700 19531780 -136098340 - L1MA5 LINE L1 -17 6283 6197 8 734 202 347 40 0 chr4 19532178 19532253 -136097867 - L2a LINE L2 -1 3425 3348 8 734 254 281 47 0 chr4 19532956 19533020 -136097100 + ID4_ SINE ID 11 77 -6 8 734 502 293 161 6 chr4 19535197 19535544 -136094576 - L1MD2 LINE L1 -251 6108 5708 8 734 446 261 103 0 chr4 19535556 19535721 -136094399 + L1MA4 LINE L1 5695 5876 -424 8 734 391 385 57 48 chr4 19536387 19536616 -136093504 + LTR87 LTR ERVL? 3 233 -391 8 734 196 292 192 0 chr4 19539313 19539443 -136090677 - L2a LINE L2 0 3426 3272 8 734 1311 284 65 80 chr4 19541337 19541659 -136088461 + L1MA4A LINE L1 3464 3789 -2357 9 734 676 241 106 5 chr4 19541659 19541847 -136088273 + B3 SINE B2 1 207 -9 9 734 1311 293 107 133 chr4 19541847 19542009 -136088111 + L1MA4A LINE L1 3756 3892 -1988 9 734 1665 21 0 0 chr4 19542009 19542197 -136087923 + B2_Mm1a SINE B2 2 189 -4 9 734 1311 282 108 112 chr4 19542197 19542843 -136087277 + L1MA4A LINE L1 3893 4562 -1741 9 734 240 235 0 0 chr4 19542843 19542894 -136087226 + B3 SINE B2 159 209 -7 9 734 1311 282 108 112 chr4 19542894 19544211 -136085909 + L1MA4A LINE L1 4563 5931 -372 9 734 492 298 114 15 chr4 19544418 19544619 -136085501 - Charlie1 DNA MER1_type -1113 1668 1448 9 734 2049 150 54 3 chr4 19545789 19546143 -136083977 + ORR1C1 LTR MaLR 5 376 -2 9 734 232 309 149 33 chr4 19546729 19546910 -136083210 - MIR SINE MIR -60 202 1 9 734 710 253 114 73 chr4 19547200 19547541 -136082579 + MTEa LTR MaLR 17 371 -8 9 734 295 290 48 48 chr4 19548725 19548830 -136081290 + PB1D10 SINE Alu 2 106 -11 9 734 341 172 16 0 chr4 19549324 19549388 -136080732 - B1_Mur1 SINE Alu -6 143 79 9 734 408 231 75 23 chr4 19549391 19549524 -136080596 + L1MB2 LINE L1 6014 6153 -18 1 734 1404 70 5 21 chr4 19549628 19549818 -136080302 + B2_Mm1t SINE B2 4 190 -3 1 734 286 250 58 23 chr4 19550046 19550132 -136079988 + PB1D10 SINE Alu 8 96 -21 1 734 25 31 0 0 chr4 19550583 19550615 -136079505 + AT_rich Low_complexity Low_complexity 1 32 0 1 734 273 259 14 35 chr4 19550618 19550762 -136079358 - Lx2B LINE L1 -24 6976 6836 1 734 502 269 141 14 chr4 19550784 19551067 -136079053 + L1M2 LINE L1 3358 3676 -2467 1 734 225 175 17 34 chr4 19551067 19551126 -136078994 + (CAGA)n Simple_repeat Simple_repeat 3 60 0 1 734 289 284 99 7 chr4 19551126 19551268 -136078852 + L1_Rod LINE L1 3841 3995 -1852 1 734 1964 191 43 95 chr4 19551392 19551822 -136078298 - RLTR11A2 LTR ERVK 0 527 121 1 734 1074 75 0 20 chr4 19551822 19551972 -136078148 - B1_Mus2 SINE Alu 0 147 1 1 734 1964 191 43 95 chr4 19551972 19552078 -136078042 - RLTR11A2 LTR ERVK -407 120 19 1 734 1003 261 55 72 chr4 19552099 19552739 -136077381 + L1M2 LINE L1 4201 4829 -1314 1 734 645 244 53 31 chr4 19552761 19552992 -136077128 + L1M2 LINE L1 5326 5552 -748 1 734 969 152 133 17 chr4 19553012 19553252 -136076868 + Lx9 LINE L1 7367 7634 -10 1 734 891 222 55 15 chr4 19553380 19553581 -136076539 - B3 SINE B2 -4 212 4 1 734 477 276 90 0 chr4 19553784 19553918 -136076202 + B1_Mus2 SINE Alu 2 147 0 1 734 315 0 0 0 chr4 19554382 19554417 -136075703 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 734 331 334 144 38 chr4 19556457 19556958 -136073162 + L2a LINE L2 2308 2861 -558 1 734 239 351 51 38 chr4 19557037 19557194 -136072926 + L2a LINE L2 3045 3203 -223 1 734 244 319 48 65 chr4 19557201 19557325 -136072795 + L2a LINE L2 3305 3426 0 1 734 28 0 0 0 chr4 19557502 19557530 -136072590 + AT_rich Low_complexity Low_complexity 1 28 0 1 734 304 345 137 56 chr4 19557864 19558134 -136071986 - B4A SINE B4 0 292 1 1 734 204 125 0 0 chr4 19558388 19558420 -136071700 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 734 215 258 16 0 chr4 19558445 19558507 -136071613 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1 734 401 344 0 16 chr4 19559041 19559165 -136070955 - B1F SINE Alu 0 149 28 1 734 21 0 0 0 chr4 19559463 19559484 -136070636 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 526 213 127 0 chr4 19559616 19559744 -136070376 - B1_Mur2 SINE Alu -1 148 3 1 734 441 36 0 0 chr4 19560076 19560131 -136069989 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 734 426 291 119 27 chr4 19560478 19561136 -136068984 + L1M7 LINE L1 749 1437 -572 1 734 894 118 0 56 chr4 19561468 19561611 -136068509 + B1_Mur3 SINE Alu 2 136 -13 1 734 207 0 0 0 chr4 19561613 19561636 -136068484 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 734 359 265 169 58 chr4 19561922 19562182 -136067938 + B4A SINE B4 3 291 -1 1 734 26 50 0 0 chr4 19562306 19562346 -136067774 + AT_rich Low_complexity Low_complexity 1 40 0 1 734 1168 172 23 0 chr4 19563427 19563642 -136066478 + Lx9 LINE L1 6776 6995 -649 1 734 443 125 12 0 chr4 19563639 19563719 -136066401 - Lx9 LINE L1 -49 7595 7515 1 734 369 0 0 0 chr4 19563720 19563761 -136066359 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 734 342 197 0 0 chr4 19563785 19563856 -136066264 - Lx9 LINE L1 -190 7454 7384 1 734 2578 214 25 8 chr4 19563866 19564463 -136065657 + Lx9 LINE L1 7038 7644 0 1 734 380 284 69 0 chr4 19564639 19564755 -136065365 - L2a LINE L2 -14 3412 3289 1 734 213 132 0 0 chr4 19565067 19565105 -136065015 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 1 734 314 277 119 0 chr4 19565141 19565242 -136064878 - PB1D9 SINE Alu -7 113 1 1 734 268 320 0 53 chr4 19566761 19566893 -136063227 + MIR SINE MIR 137 261 -1 1 734 27 0 0 0 chr4 19566904 19566931 -136063189 + AT_rich Low_complexity Low_complexity 1 27 0 1 734 558 108 0 0 chr4 19568763 19568846 -136061274 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 734 429 282 35 0 chr4 19569213 19569355 -136060765 - B1F SINE Alu -2 147 1 1 734 450 292 160 10 chr4 19570761 19570955 -136059165 + Lx8 LINE L1 6970 7192 -281 1 734 481 247 271 0 chr4 19571873 19572043 -136058077 + B3 SINE B2 1 216 0 1 734 342 67 0 0 chr4 19572525 19572570 -136057550 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 734 300 53 0 0 chr4 19572570 19572608 -136057512 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 734 383 309 45 0 chr4 19572615 19572725 -136057395 - RSINE1 SINE B4 -23 142 28 1 734 248 197 105 66 chr4 19573130 19573206 -136056914 - ID4 SINE ID -4 79 1 1 734 333 0 0 0 chr4 19573777 19573814 -136056306 + (ATG)n Simple_repeat Simple_repeat 2 38 0 1 734 23 0 0 0 chr4 19573952 19573975 -136056145 + AT_rich Low_complexity Low_complexity 1 23 0 1 734 299 290 21 21 chr4 19574000 19574095 -136056025 - B3 SINE B2 -121 95 1 1 734 306 232 70 10 chr4 19574626 19574726 -136055394 + MER58D DNA MER1_type 273 378 -8 1 734 261 239 84 0 chr4 19574955 19575026 -136055094 + B1F1 SINE Alu 23 99 -50 1 734 1464 184 111 18 chr4 19575414 19575756 -136054364 + ORR1D1 LTR MaLR 1 374 0 1 734 2162 123 36 68 chr4 19576085 19576154 -136053966 + MERVK26-int LTR ERVK 889 956 -5963 1 734 664 32 11 0 chr4 19576154 19576249 -136053871 + L1_Mus2 LINE L1 6471 6566 0 1 734 2162 123 36 68 chr4 19576249 19576563 -136053557 + MERVK26-int LTR ERVK 957 1260 -5659 1 734 633 194 99 15 chr4 19576583 19576714 -136053406 - RLTR26 LTR ERVK -500 142 1 1 734 385 290 113 5 chr4 19576953 19577147 -136052973 - B3 SINE B2 -1 215 1 1 734 22 35 0 0 chr4 19577744 19577773 -136052347 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 227 176 77 19 chr4 19578037 19578089 -136052031 - B1F2 SINE Alu -74 75 21 1 734 1143 76 0 0 chr4 19579523 19579668 -136050452 + B1_Mus2 SINE Alu 1 145 -2 1 734 765 61 0 0 chr4 19579668 19579767 -136050353 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 1 734 2854 46 3 0 chr4 19579847 19580192 -136049928 - ORR1A1 LTR MaLR 0 346 1 1 734 332 282 135 6 chr4 19580407 19580585 -136049535 + L1MC LINE L1 5523 5723 -621 1 734 324 0 0 0 chr4 19580804 19580840 -136049280 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 734 553 191 18 26 chr4 19582309 19582422 -136047698 - B1_Mur1 SINE Alu -14 135 24 1 734 249 281 24 95 chr4 19582365 19582491 -136047629 + MLT1A1 LTR MaLR 292 408 0 1 734 301 333 108 15 chr4 19582572 19582776 -136047344 + L1MD2 LINE L1 6016 6238 -121 1 734 21 0 0 0 chr4 19583201 19583222 -136046898 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 312 137 0 0 chr4 19583521 19583572 -136046548 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 734 319 237 291 11 chr4 19585169 19585344 -136044776 - Lx8 LINE L1 -66 7407 7184 1 734 3957 135 18 3 chr4 19585681 19586205 -136043915 + L1_Mur2 LINE L1 4740 5266 -611 1 734 225 0 0 0 chr4 19586205 19586230 -136043890 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1 734 3957 135 18 3 chr4 19586230 19586368 -136043752 + L1_Mur2 LINE L1 5267 5411 -466 1 734 410 363 7 7 chr4 19587400 19587547 -136042573 - B1F2 SINE Alu -1 148 2 1 734 214 356 41 0 chr4 19587779 19587852 -136042268 - ID SINE ID -147 77 2 1 734 23 33 0 0 chr4 19588086 19588116 -136042004 + AT_rich Low_complexity Low_complexity 1 30 0 1 734 383 217 97 42 chr4 19588195 19588339 -136041781 - Lx3C LINE L1 -2 6974 6823 1 734 27 49 0 0 chr4 19588708 19588749 -136041371 + AT_rich Low_complexity Low_complexity 1 41 0 1 734 316 340 29 0 chr4 19588833 19588936 -136041184 + ID_B1 SINE B4 81 186 -38 1 734 234 258 74 63 chr4 19589774 19589869 -136040251 + MIRm SINE MIR 43 138 -138 1 734 574 161 25 51 chr4 19590431 19590549 -136039571 - B1_Mur4 SINE Alu -3 147 33 1 734 681 264 19 6 chr4 19590570 19590730 -136039390 + MLT1B LTR MaLR 180 341 -49 1 734 41265 4 0 0 chr4 19590897 19597473 -136032647 - L1Md_A LINE L1 0 6582 7 1 734 289 325 0 0 chr4 19599232 19599312 -136030808 - PB1D10 SINE Alu -34 83 4 1 734 24 0 0 0 chr4 19599753 19599777 -136030343 + AT_rich Low_complexity Low_complexity 1 24 0 1 734 192 143 0 0 chr4 19600478 19600520 -136029600 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 734 800 200 198 0 chr4 19600762 19601067 -136029053 - L1MB8 LINE L1 -151 6023 5645 1 734 253 333 39 10 chr4 19601145 19601248 -136028872 - PB1D10 SINE Alu -9 108 3 1 734 392 288 101 14 chr4 19602070 19602218 -136027902 + MIRb SINE MIR 55 215 -53 1 734 459 342 58 13 chr4 19603113 19603267 -136026853 + RSINE1 SINE B4 3 163 -2 1 734 238 250 196 0 chr4 19603748 19603840 -136026280 + B1F1 SINE Alu 5 114 -3 1 734 601 217 54 8 chr4 19603854 19603984 -136026136 + B1F1 SINE Alu 9 144 -5 1 734 819 252 10 25 chr4 19603998 19604197 -136025923 + ORR1D2 LTR MaLR 168 363 -7 1 734 3028 228 47 33 chr4 19604200 19604980 -136025140 + ORR1D2-int LTR MaLR 1 791 -579 1 734 372 219 0 0 chr4 19605055 19605119 -136025001 + ID4_ SINE ID 16 79 -4 1 734 24 85 0 0 chr4 19605815 19605874 -136024246 + AT_rich Low_complexity Low_complexity 1 59 0 1 734 296 200 0 0 chr4 19605895 19605950 -136024170 - L1MC4 LINE L1 -185 7857 7803 1 734 279 0 0 0 chr4 19605996 19606027 -136024093 + (A)n Simple_repeat Simple_repeat 1 31 0 1 734 208 283 43 0 chr4 19606352 19606398 -136023722 - MIR3 SINE MIR -46 162 115 1 734 926 94 24 0 chr4 19606924 19607051 -136023069 + B1_Mus1 SINE Alu 3 132 -16 1 734 288 0 0 0 chr4 19607057 19607089 -136023031 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 734 347 192 0 13 chr4 19607089 19607168 -136022952 + GA-rich Low_complexity Low_complexity 3 80 0 1 734 669 149 0 0 chr4 19607155 19607269 -136022851 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 1 734 914 250 15 0 chr4 19607609 19607813 -136022307 - B3 SINE B2 -9 207 1 1 734 392 180 139 35 chr4 19607817 19607961 -136022159 - L1MA6 LINE L1 -51 6249 6091 1 734 334 161 36 0 chr4 19608154 19608210 -136021910 + MurSatRep1 Unknown Unknown 208 265 -1872 2 734 544 307 146 5 chr4 19610457 19610663 -136019457 + RMER15 LTR ERVL 324 558 -17 2 734 2100 161 24 223 chr4 19610942 19611726 -136018394 + RMER6C LTR ERVK 1 624 -132 2 734 324 0 0 0 chr4 19611741 19611777 -136018343 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 734 186 43 0 0 chr4 19612126 19612149 -136017971 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 734 494 294 143 0 chr4 19612171 19612290 -136017830 + RSINE1 SINE B4 1 136 -29 2 734 26 50 0 0 chr4 19612294 19612334 -136017786 + AT_rich Low_complexity Low_complexity 1 40 0 2 734 238 200 0 0 chr4 19612425 19612465 -136017655 + B4 SINE B4 2 41 -251 2 734 343 341 66 60 chr4 19612693 19613034 -136017086 + L1M5 LINE L1 5290 5617 -623 2 734 226 326 35 21 chr4 19613121 19613262 -136016858 + L1M5 LINE L1 5726 5868 -305 2 734 1257 195 112 18 chr4 19613785 19614125 -136015995 + ORR1D1 LTR MaLR 3 374 0 2 734 383 240 20 59 chr4 19614172 19614274 -136015846 + PB1D10 SINE Alu 1 98 -19 2 734 201 74 0 0 chr4 19614275 19614302 -136015818 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 734 679 230 0 22 chr4 19614671 19614809 -136015311 - B1_Mur1 SINE Alu -1 148 14 2 734 21 0 0 0 chr4 19614820 19614841 -136015279 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 499 242 25 19 chr4 19614926 19615063 -136015057 - L2c LINE L2 -25 3350 3207 2 734 290 62 29 44 chr4 19615170 19615238 -136014882 + (TTTTG)n Simple_repeat Simple_repeat 3 69 0 2 734 269 176 0 38 chr4 19615253 19615306 -136014814 + B1_Mus2 SINE Alu 4 54 -93 2 734 225 139 0 0 chr4 19615315 19615358 -136014762 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 734 855 178 0 0 chr4 19615392 19615840 -136014280 + GA-rich Low_complexity Low_complexity 1 448 0 2 734 722 212 106 26 chr4 19615901 19616090 -136014030 - B3 SINE B2 -12 204 1 2 734 528 281 67 6 chr4 19616105 19616284 -136013836 - B3A SINE B2 -8 190 1 2 734 206 121 0 0 chr4 19616559 19616592 -136013528 + (A)n Simple_repeat Simple_repeat 1 33 0 2 734 665 207 15 7 chr4 19617554 19617690 -136012430 + B1_Mur2 SINE Alu 1 137 -12 2 734 180 0 0 0 chr4 19617694 19617714 -136012406 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 734 13409 91 32 15 chr4 19618359 19620803 -136009317 + Lx3B LINE L1 3703 6182 -791 2 734 262 79 0 0 chr4 19620804 19620842 -136009278 - MTB_Mm LTR MaLR -369 38 1 2 734 241 206 29 0 chr4 19622286 19622354 -136007766 + (TTG)n Simple_repeat Simple_repeat 2 71 0 2 734 180 152 0 0 chr4 19622359 19622392 -136007728 + T-rich Low_complexity Low_complexity 1 33 0 2 734 295 216 0 0 chr4 19622453 19622504 -136007616 + PB1 SINE Alu 50 100 -27 2 734 704 67 0 0 chr4 19622588 19622677 -136007443 + L1Md_F2 LINE L1 5497 5585 -298 2 734 8404 33 2 5 chr4 19622678 19623676 -136006444 + L1Md_F2 LINE L1 5587 6581 -1 2 734 240 154 0 0 chr4 19624439 19624491 -136005629 + T-rich Low_complexity Low_complexity 1 52 0 2 734 324 196 61 145 chr4 19624504 19624635 -136005485 - PB1D7 SINE Alu 0 120 1 2 734 798 295 65 14 chr4 19625001 19625293 -136004827 - MER2 DNA MER2_type -38 307 1 2 734 314 154 45 15 chr4 19625824 19625890 -136004230 + PB1D10 SINE Alu 48 115 -2 2 734 1083 203 20 0 chr4 19627233 19627435 -136002685 + B3 SINE B2 1 206 -10 2 734 639 221 29 0 chr4 19627468 19627604 -136002516 + B1_Mur2 SINE Alu 3 142 -7 2 734 313 0 0 0 chr4 19628005 19628041 -136002079 + U2 snRNA snRNA 1 36 -152 2 734 262 179 71 0 chr4 19628621 19628677 -136001443 - B1F SINE Alu -56 93 34 2 734 1257 106 0 36 chr4 19629488 19629684 -136000436 - B2_Mm2 SINE B2 -6 189 1 2 734 983 228 171 0 chr4 19630061 19630342 -135999778 - MTEb LTR MaLR -2 377 49 2 734 315 266 11 5 chr4 19630858 19630953 -135999167 + MLT1G3 LTR MaLR 457 594 -1 2 734 291 330 43 11 chr4 19631075 19631167 -135998953 + L2b LINE L2 3248 3342 -33 2 734 477 261 104 0 chr4 19632187 19632321 -135997799 + B1_Mur1 SINE Alu 2 149 0 2 734 267 136 0 0 chr4 19632325 19632384 -135997736 + (A)n Simple_repeat Simple_repeat 1 59 0 2 734 225 281 0 17 chr4 19633262 19633320 -135996800 + Charlie4z DNA MER1_type 16 72 -95 2 734 891 150 7 20 chr4 19633495 19633645 -135996475 + B1_Mur2 SINE Alu 1 148 -1 2 734 538 283 28 28 chr4 19633663 19633805 -135996315 - RSINE1 SINE B4 -14 151 10 2 734 532 229 26 65 chr4 19634076 19634230 -135995890 + B1_Mur2 SINE Alu 2 149 0 2 734 324 253 161 0 chr4 19634503 19634590 -135995530 + PB1D10 SINE Alu 3 103 -14 2 734 508 265 184 19 chr4 19637382 19637671 -135992449 - MTE2b LTR MaLR -11 368 3 2 734 555 299 67 55 chr4 19638300 19638555 -135991565 - ORSL DNA Tip100 -15 260 3 2 734 775 333 149 26 chr4 19639063 19639559 -135990561 + MLT1F1 LTR MaLR 2 558 -11 2 734 292 276 105 147 chr4 19639576 19639655 -135990465 + MER20 DNA MER1_type 1 79 -140 2 734 351 0 0 0 chr4 19639655 19639694 -135990426 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 734 292 276 105 147 chr4 19639694 19639805 -135990315 + MER20 DNA MER1_type 80 183 -36 2 734 736 217 0 0 chr4 19640000 19640129 -135989991 + B1_Mur2 SINE Alu 1 129 -20 2 734 432 0 0 0 chr4 19640144 19640192 -135989928 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 734 243 0 0 0 chr4 19640276 19640303 -135989817 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 734 316 294 211 46 chr4 19640323 19640499 -135989621 - MLT2B5 LTR ERVL -332 269 64 2 734 460 303 83 8 chr4 19640583 19640716 -135989404 - B1F SINE Alu -4 145 3 2 734 225 341 33 66 chr4 19640643 19640734 -135989386 - B4A SINE B4 -125 167 80 2 734 1208 208 208 72 chr4 19640875 19640933 -135989187 - MT2B LTR ERVL 0 601 545 2 734 615 27 0 0 chr4 19640933 19641006 -135989114 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 734 1208 208 208 72 chr4 19641006 19641476 -135988644 - MT2B LTR ERVL -57 544 1 2 734 201 422 49 0 chr4 19641973 19642075 -135988045 + L2b LINE L2 3265 3371 -4 2 734 781 320 45 4 chr4 19642333 19642600 -135987520 - B4A SINE B4 -14 278 1 2 734 1655 27 0 0 chr4 19642836 19643024 -135987096 - B2_Mm1a SINE B2 -4 189 2 2 734 551 253 113 0 chr4 19643283 19643433 -135986687 + B4A SINE B4 118 284 -8 2 734 1453 248 56 28 chr4 19644628 19645055 -135985065 + Lx8 LINE L1 6964 7402 -71 2 734 24 0 0 0 chr4 19645187 19645211 -135984909 + AT_rich Low_complexity Low_complexity 1 24 0 2 734 237 291 23 23 chr4 19645404 19645492 -135984628 + MTEa LTR MaLR 278 365 -14 2 734 488 335 63 41 chr4 19646497 19646718 -135983402 + L2a LINE L2 3200 3425 -1 2 734 4510 153 48 23 chr4 19647176 19647725 -135982395 - RMER19B LTR ERVK 0 902 334 2 734 1817 112 79 4 chr4 19647725 19648004 -135982116 - Lx2 LINE L1 -2 6995 6696 2 734 4510 183 99 37 chr4 19648004 19648383 -135981737 - RMER19B LTR ERVK -326 411 7 2 734 342 0 0 0 chr4 19648655 19648693 -135981427 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 734 207 0 0 0 chr4 19648747 19648770 -135981350 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 734 333 0 0 0 chr4 19648770 19648806 -135981314 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 734 635 327 18 25 chr4 19649369 19649645 -135980475 + B4A SINE B4 3 276 -16 2 734 572 322 40 63 chr4 19649719 19649971 -135980149 - MLT1G3 LTR MaLR -74 521 276 2 734 236 100 0 24 chr4 19649982 19650023 -135980097 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 2 734 523 240 8 31 chr4 19650030 19650159 -135979961 - B1_Mur3 SINE Alu -19 130 5 2 734 233 264 181 0 chr4 19650308 19650380 -135979740 + MER63B DNA AcHobo 316 400 -36 2 734 449 232 74 0 chr4 19650528 19650623 -135979497 + ID_B1 SINE B4 85 186 -38 2 734 368 312 92 0 chr4 19650623 19650635 -135979485 + B1F1 SINE Alu 4 120 -29 2 734 616 269 55 0 chr4 19650716 19650861 -135979259 + B3A SINE B2 2 154 -44 2 734 486 33 0 0 chr4 19650861 19650921 -135979199 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 734 234 0 0 0 chr4 19650921 19650946 -135979174 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 734 489 195 108 91 chr4 19650946 19650985 -135979135 + B2_Mm2 SINE B2 144 189 -6 2 734 484 323 88 3 chr4 19650980 19651285 -135978835 - LTR40a LTR ERVL -4 515 123 2 734 455 328 92 55 chr4 19651395 19651721 -135978399 + ORR1E LTR MaLR 12 349 -10 2 734 434 255 20 0 chr4 19654091 19654193 -135975927 + PB1D10 SINE Alu 4 107 -10 2 734 180 0 0 0 chr4 19654193 19654213 -135975907 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 734 1315 110 4 42 chr4 19654637 19654874 -135975246 - L1_Mus3 LINE L1 0 6638 6411 2 734 965 290 50 13 chr4 19655188 19655646 -135974474 + L1MA7 LINE L1 4758 5232 -911 2 734 319 252 185 38 chr4 19655646 19655681 -135974439 - MT2A LTR ERVL 0 584 530 2 734 414 0 0 0 chr4 19655681 19655727 -135974393 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 734 1854 245 65 7 chr4 19655727 19656161 -135973959 - MT2A LTR ERVL -55 529 6 2 734 293 223 11 0 chr4 19656172 19656266 -135973854 + (CATA)n Simple_repeat Simple_repeat 1 95 0 2 734 530 288 102 0 chr4 19656298 19656389 -135973731 + L1MA7 LINE L1 5677 5781 -510 2 734 213 39 0 0 chr4 19656389 19656415 -135973705 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2 734 530 288 102 0 chr4 19656415 19656559 -135973561 + L1MA7 LINE L1 5782 5935 -356 2 734 214 195 0 0 chr4 19656569 19656610 -135973510 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 734 347 300 0 29 chr4 19656680 19656783 -135973337 + BC1_Mm scRNA scRNA 2 101 -51 2 734 346 7 0 158 chr4 19656840 19657023 -135973097 + (CAAGG)n Simple_repeat Simple_repeat 4 157 0 2 734 507 184 27 64 chr4 19657023 19657034 -135973086 + B1_Mus2 SINE Alu 42 52 -95 2 734 249 83 0 0 chr4 19657034 19657070 -135973050 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 3 734 507 184 27 64 chr4 19657070 19657168 -135972952 + B1_Mus2 SINE Alu 53 147 0 2 734 882 281 85 33 chr4 19657152 19657542 -135972578 - Charlie1 DNA MER1_type -41 2740 2331 3 734 578 294 125 24 chr4 19658943 19659185 -135970935 - MLT1B LTR MaLR -15 375 103 3 734 318 323 74 0 chr4 19659336 19659525 -135970595 + L1MDa LINE L1 13 215 -6418 3 734 468 186 115 0 chr4 19659646 19659759 -135970361 - Tigger7 DNA MER2_type -128 2363 2238 3 734 870 277 71 4 chr4 19659757 19659996 -135970124 - Tigger7 DNA MER2_type -2081 410 156 3 734 264 224 270 20 chr4 19660027 19660127 -135969993 + PB1 SINE Alu 1 125 -2 3 734 353 318 0 0 chr4 19660147 19660235 -135969885 + RSINE1 SINE B4 55 142 -23 3 734 21 0 0 0 chr4 19660244 19660265 -135969855 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 287 305 55 28 chr4 19660352 19660534 -135969586 + B2_Mm2 SINE B2 9 195 0 3 734 180 0 0 0 chr4 19660770 19660790 -135969330 + (A)n Simple_repeat Simple_repeat 1 20 0 3 735 450 0 0 0 chr4 19660839 19660889 -135969231 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 735 719 269 18 75 chr4 19661035 19661255 -135968865 + B3A SINE B2 2 216 0 3 735 204 40 0 0 chr4 19661418 19661443 -135968677 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 735 858 112 0 0 chr4 19661443 19661602 -135968518 + (GA)n Simple_repeat Simple_repeat 2 161 0 3 735 342 300 0 82 chr4 19661613 19661711 -135968409 + RSINE1 SINE B4 23 112 -53 3 735 303 273 38 8 chr4 19661752 19661885 -135968235 + L1MDa LINE L1 2208 2344 -4289 3 735 341 278 173 34 chr4 19662402 19662581 -135967539 + RMER15 LTR ERVL 356 559 -16 3 735 284 318 23 23 chr4 19662600 19662732 -135967388 - MLT2B4 LTR ERVL -296 260 129 3 735 3722 127 69 35 chr4 19663319 19663972 -135966148 - RLTR33 LTR ERVK 0 678 4 3 735 290 347 110 22 chr4 19666123 19666441 -135963679 - L2a LINE L2 -22 3404 3059 3 735 334 100 74 7 chr4 19666456 19666517 -135963603 - ORR1D1 LTR MaLR 0 384 285 3 735 582 83 31 0 chr4 19666520 19666616 -135963504 + L1_Mus1 LINE L1 6465 6563 -4 3 735 1016 234 42 78 chr4 19666666 19666999 -135963121 - ORR1D1 LTR MaLR -53 321 1 3 735 256 259 34 45 chr4 19667737 19667826 -135962294 + MLT1H LTR MaLR 94 181 -368 3 735 998 49 0 0 chr4 19667929 19668052 -135962068 + B1_Mus2 SINE Alu 15 137 -10 3 735 381 17 0 49 chr4 19668052 19668113 -135962007 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 3 735 446 357 0 0 chr4 19668258 19668412 -135961708 - ID_B1 SINE B4 0 224 71 3 735 3154 51 2 20 chr4 19668647 19669050 -135961070 + MTA_Mm LTR MaLR 1 396 0 3 735 3806 93 22 16 chr4 19669208 19669225 -135960895 - Lx LINE L1 -4 6650 6640 3 735 234 0 0 0 chr4 19669225 19669251 -135960869 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 735 3806 93 22 16 chr4 19669251 19669778 -135960342 - Lx LINE L1 -15 6639 6103 3 735 2349 68 3 0 chr4 19669778 19670101 -135960019 + Lx LINE L1 5782 6105 -549 3 735 1028 257 94 25 chr4 19670813 19671132 -135958988 - MTE2b LTR MaLR 0 379 39 3 735 36664 45 13 15 chr4 19671227 19677060 -135953060 - L1Md_T LINE L1 0 6585 717 3 735 226 316 59 59 chr4 19677060 19677161 -135952959 - RLTR45 LTR ERVK -378 104 4 3 735 36664 45 13 15 chr4 19677161 19677871 -135952249 - L1Md_T LINE L1 0 716 1 3 735 23 54 0 0 chr4 19677891 19677928 -135952192 + AT_rich Low_complexity Low_complexity 1 37 0 3 735 194 208 19 0 chr4 19678020 19678073 -135952047 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 735 698 179 36 0 chr4 19678268 19678408 -135951712 + B1_Mus1 SINE Alu 1 145 -3 3 735 180 0 0 0 chr4 19678410 19678430 -135951690 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 735 223 98 59 0 chr4 19678930 19678981 -135951139 + T-rich Low_complexity Low_complexity 1 54 0 3 735 359 342 20 56 chr4 19679112 19679310 -135950810 + B4A SINE B4 100 290 -2 3 735 23 0 0 0 chr4 19679357 19679380 -135950740 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 2214 175 40 0 chr4 19679380 19679779 -135950341 - MTC LTR MaLR -2 419 5 3 735 749 268 21 37 chr4 19679809 19679999 -135950121 - B3A SINE B2 0 198 12 3 735 205 119 0 45 chr4 19680361 19680405 -135949715 + (TATG)n Simple_repeat Simple_repeat 3 44 0 3 735 214 309 0 0 chr4 19680479 19680563 -135949557 + T-rich Low_complexity Low_complexity 1 84 0 3 735 357 355 40 22 chr4 19680624 19680846 -135949274 - RMER15 LTR ERVL -71 504 279 3 735 241 355 60 70 chr4 19681104 19681166 -135948954 - RLTR20D LTR ERVK -269 423 362 3 735 5226 44 2 0 chr4 19681166 19681802 -135948318 + L1Md_F2 LINE L1 5946 6582 0 3 735 332 327 54 64 chr4 19681802 19682089 -135948031 - RLTR20D LTR ERVK -331 361 50 3 735 1082 118 11 0 chr4 19682878 19683056 -135947064 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 735 3863 82 11 4 chr4 19683069 19683606 -135946514 - L1_Mus3 LINE L1 -4 6634 6094 3 735 3318 93 14 0 chr4 19683606 19684102 -135946018 + L1_Mm LINE L1 4090 4592 -1291 3 735 612 307 73 41 chr4 19684359 19684675 -135945445 + LTR53 LTR ERVL 124 449 -70 3 735 344 343 78 7 chr4 19684995 19685136 -135944984 + RSINE1 SINE B4 4 154 -11 3 735 414 100 0 0 chr4 19685137 19685197 -135944923 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 735 200 35 35 0 chr4 19685536 19685565 -135944555 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 735 390 284 69 0 chr4 19685568 19685670 -135944450 - RSINE1 SINE B4 -51 114 6 3 735 256 264 38 89 chr4 19685763 19685842 -135944278 - PB1D9 SINE Alu -32 88 14 3 735 251 293 168 25 chr4 19686294 19686413 -135943707 - ORR1E LTR MaLR -2 357 222 3 735 234 240 114 51 chr4 19686633 19686712 -135943408 - MLT2B3 LTR ERVL -470 84 1 3 735 8042 26 0 0 chr4 19686847 19688086 -135942034 - L1Md_T LINE L1 0 6582 5344 3 735 35572 74 19 14 chr4 19688088 19694409 -135935711 - L1Md_F3 LINE L1 -14 6573 220 3 735 198 207 0 0 chr4 19694491 19694549 -135935571 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 735 600 111 0 0 chr4 19694973 19695063 -135935057 + (TC)n Simple_repeat Simple_repeat 2 91 0 3 735 43 76 0 0 chr4 19695235 19695327 -135934793 + AT_rich Low_complexity Low_complexity 1 92 0 3 735 320 351 6 72 chr4 19695327 19695493 -135934627 - MT2B2 LTR ERVL -255 329 175 3 735 586 285 54 0 chr4 19695364 19695494 -135934626 - B1_Mur1 SINE Alu -3 146 10 3 735 223 388 30 10 chr4 19695600 19695699 -135934421 + L2a LINE L2 3294 3394 -32 3 735 9022 15 0 0 chr4 19696313 19697391 -135932729 + L1Md_T LINE L1 4509 5586 -297 3 735 8109 50 1 0 chr4 19697391 19698383 -135931737 + L1Md_T LINE L1 5587 6579 -3 3 735 26 30 0 0 chr4 19698487 19698520 -135931600 + AT_rich Low_complexity Low_complexity 1 33 0 3 735 714 204 93 90 chr4 19698606 19698794 -135931326 + L1_Mur3 LINE L1 5081 5269 -611 3 735 1138 62 7 14 chr4 19698794 19698931 -135931189 + B1_Mm SINE Alu 1 138 -9 3 735 234 62 0 0 chr4 19698931 19698963 -135931157 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 735 210 91 0 0 chr4 19698983 19699016 -135931104 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 735 714 204 93 90 chr4 19699016 19699171 -135930949 + L1_Mur3 LINE L1 5276 5435 -445 3 735 391 246 0 0 chr4 19699180 19699249 -135930871 + B3 SINE B2 3 71 -145 3 735 249 182 0 43 chr4 19699258 19699304 -135930816 + B3 SINE B2 18 61 -155 3 735 1408 267 93 0 chr4 19699562 19699929 -135930191 + MTD LTR MaLR 19 419 0 3 735 220 256 188 25 chr4 19700780 19700860 -135929260 - B1F2 SINE Alu -14 135 43 3 735 225 0 0 0 chr4 19700865 19700890 -135929230 + (T)n Simple_repeat Simple_repeat 1 25 0 3 735 377 379 96 21 chr4 19701141 19701381 -135928739 + RMER15 LTR ERVL 316 573 -2 3 735 11910 15 0 0 chr4 19701723 19703636 -135926484 - L1Md_T LINE L1 -229 6353 4441 3 735 1916 18 0 0 chr4 19703636 19703859 -135926261 + L1Md_T LINE L1 6360 6582 0 3 735 252 0 0 0 chr4 19704046 19704074 -135926046 + (A)n Simple_repeat Simple_repeat 1 28 0 3 735 202 226 0 16 chr4 19704323 19704353 -135925767 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 735 234 284 0 138 chr4 19704353 19704447 -135925673 + ID4 SINE ID 1 81 -2 3 735 202 226 0 16 chr4 19704447 19704479 -135925641 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 735 599 93 47 0 chr4 19704548 19704634 -135925486 - ORR1A4 LTR MaLR 0 329 240 3 735 666 144 0 138 chr4 19704622 19704767 -135925353 - ORR1A4 LTR MaLR -204 125 1 3 735 3184 73 0 2 chr4 19704849 19705258 -135924862 - L1_Mus1 LINE L1 0 6567 6160 3 735 2566 297 38 20 chr4 19705279 19706197 -135923923 + RMER15-int LTR ERVL 850 1784 -3215 3 735 503 307 61 121 chr4 19706631 19706961 -135923159 - ORR1E LTR MaLR -49 310 1 3 735 207 69 0 0 chr4 19707169 19707198 -135922922 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 735 223 359 65 13 chr4 19707461 19707616 -135922504 - MIRb SINE MIR -24 244 82 3 735 648 327 58 27 chr4 19707981 19708239 -135921881 + MLT1F1 LTR MaLR 304 569 0 3 735 359 311 29 58 chr4 19709337 19709511 -135920609 + MamGypLTR2c LTR Gypsy 898 1066 -2 3 735 293 298 26 26 chr4 19709710 19709827 -135920293 - MIR SINE MIR -32 230 114 3 735 180 243 0 0 chr4 19709850 19709887 -135920233 - MIR SINE MIR -213 49 13 3 735 25227 81 32 111 chr4 19710822 19716403 -135913717 + L1Md_F2 LINE L1 443 5585 -298 3 735 7417 73 5 7 chr4 19716405 19717386 -135912734 + L1Md_F2 LINE L1 5588 6566 -16 3 735 210 37 0 0 chr4 19717416 19717443 -135912677 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 735 4110 233 84 59 chr4 19717453 19717879 -135912241 + Lx6 LINE L1 6282 6742 -718 3 735 291 28 0 0 chr4 19717879 19717915 -135912205 + (CATA)n Simple_repeat Simple_repeat 2 37 0 3 735 4110 233 84 59 chr4 19717915 19718319 -135911801 + Lx6 LINE L1 6743 7125 -335 3 735 432 0 0 0 chr4 19718319 19718367 -135911753 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 3 735 4110 233 84 59 chr4 19718367 19718684 -135911436 + Lx6 LINE L1 7126 7459 -1 3 735 1146 95 0 0 chr4 19719079 19719226 -135910894 - B1_Mus2 SINE Alu 0 147 1 3 735 1810 174 86 3 chr4 19719435 19719774 -135910346 + ORR1B2 LTR MaLR 1 367 0 3 735 6829 183 45 14 chr4 19719774 19721237 -135908883 + ORR1B2-int LTR MaLR 1 1509 0 3 735 1713 178 82 9 chr4 19721238 19721579 -135908541 + ORR1B2 LTR MaLR 2 367 0 3 735 663 329 68 87 chr4 19721633 19721999 -135908121 - ORR1E LTR MaLR 0 359 1 3 735 1444 220 35 43 chr4 19722118 19722465 -135907655 + ORR1C1 LTR MaLR 1 344 -34 3 735 22787 170 22 22 chr4 19722558 19724404 -135905716 + Lx2 LINE L1 628 2463 -3423 3 735 258 56 0 0 chr4 19724404 19724440 -135905680 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 735 22787 164 19 15 chr4 19724440 19727407 -135902713 + Lx2 LINE L1 2464 5434 -452 3 735 5564 28 0 0 chr4 19727407 19728091 -135902029 + L1Md_T LINE L1 5927 6582 0 4 735 22787 147 17 14 chr4 19728091 19729625 -135900495 + Lx2 LINE L1 5435 6996 -1 3 735 212 200 18 35 chr4 19729625 19729682 -135900438 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 4 735 326 157 0 0 chr4 19729685 19729736 -135900384 + ORR1C1 LTR MaLR 328 378 0 3 735 2682 315 66 24 chr4 19730116 19731010 -135899110 + Lx8 LINE L1 4090 5027 -853 4 735 314 325 171 24 chr4 19731010 19731174 -135898946 + B3A SINE B2 1 188 -10 4 735 2682 299 61 27 chr4 19731174 19732026 -135898094 + Lx8 LINE L1 5028 5909 -1564 4 735 621 348 4 19 chr4 19732163 19732421 -135897699 + RMER1C Other Other 624 877 -465 4 735 2228 297 99 20 chr4 19732425 19733162 -135896958 + RMER1C Other Other 420 1198 -144 4 735 405 0 0 0 chr4 19733162 19733207 -135896913 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 735 2228 297 99 20 chr4 19733207 19733311 -135896809 + RMER1C Other Other 1199 1326 -16 4 735 1566 174 164 9 chr4 19733312 19733474 -135896646 - ORR1B1 LTR MaLR 0 394 211 4 735 567 0 0 0 chr4 19733474 19733537 -135896583 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 735 531 0 0 0 chr4 19733537 19733595 -135896525 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 735 1566 174 164 9 chr4 19733595 19733772 -135896348 - ORR1B1 LTR MaLR -184 210 2 4 735 4981 167 103 169 chr4 19733772 19735387 -135894733 - ORR1B1-int LTR MaLR 0 1509 1 4 735 2072 183 21 5 chr4 19735387 19735771 -135894349 - ORR1B1 LTR MaLR 0 394 5 4 735 25275 85 6 7 chr4 19736125 19740559 -135889561 - L1Md_F2 LINE L1 -9 6573 2143 4 735 5781 85 12 19 chr4 19740567 19741415 -135888705 - L1Md_F2 LINE L1 -10 6572 5731 4 735 6359 97 42 2 chr4 19741402 19743130 -135886990 - L1Md_F2 LINE L1 -3704 2179 380 4 735 21 36 0 0 chr4 19743390 19743418 -135886702 + AT_rich Low_complexity Low_complexity 1 28 0 4 735 339 274 0 0 chr4 19743422 19743495 -135886625 + ID4_ SINE ID 1 73 -10 4 735 211 291 0 0 chr4 19743497 19743552 -135886568 + A-rich Low_complexity Low_complexity 4 58 0 4 735 2536 129 23 23 chr4 19743646 19744021 -135886099 + Lx LINE L1 6217 6585 -69 4 735 423 0 0 0 chr4 19744021 19744068 -135886052 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 735 2536 129 23 23 chr4 19744068 19744128 -135885992 + Lx LINE L1 6586 6652 -2 4 735 702 245 126 36 chr4 19744139 19744448 -135885672 - LTR48 LTR ERV1 -44 743 216 4 735 238 360 31 87 chr4 19744583 19744778 -135885342 - MLT1A LTR MaLR -165 209 26 4 735 531 279 123 23 chr4 19744850 19745127 -135884993 - MLT1A-int LTR MaLR -133 1602 1345 4 735 215 268 80 30 chr4 19745419 19745519 -135884601 + B1_Mur2 SINE Alu 44 148 -1 4 735 21 0 0 0 chr4 19746014 19746035 -135884085 + AT_rich Low_complexity Low_complexity 1 21 0 4 735 270 0 0 0 chr4 19746814 19746844 -135883276 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 735 377 256 0 0 chr4 19747147 19747229 -135882891 + ID4 SINE ID 2 83 0 4 735 198 0 0 0 chr4 19747567 19747589 -135882531 + (T)n Simple_repeat Simple_repeat 1 22 0 4 735 955 103 76 49 chr4 19747700 19747884 -135882236 - B2_Mm2 SINE B2 -4 191 3 4 735 1164 112 0 0 chr4 19748639 19748898 -135881222 + (TG)n Simple_repeat Simple_repeat 1 259 0 4 735 440 299 26 0 chr4 19749111 19749127 -135880993 + ID SINE ID 65 83 -141 4 735 361 241 42 67 chr4 19749127 19749247 -135880873 + PB1D10 SINE Alu 1 117 0 4 735 301 250 44 0 chr4 19749685 19749753 -135880367 - ID4 SINE ID -11 72 2 4 735 1008 150 18 0 chr4 19749823 19749990 -135880130 + ORR1C2 LTR MaLR 3 172 -212 4 735 192 97 0 0 chr4 19749991 19750022 -135880098 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 4 735 620 197 0 0 chr4 19750023 19750145 -135879975 + ORR1C2 LTR MaLR 263 384 0 4 735 648 56 0 0 chr4 19752026 19752115 -135878005 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 735 264 292 82 14 chr4 19752347 19752493 -135877627 - L1MA4A LINE L1 -4 6299 6144 4 735 1306 172 22 18 chr4 19752722 19752896 -135877224 - URR1A DNA MER1_type 0 226 51 4 735 1850 209 68 13 chr4 19752896 19753293 -135876827 - MTC LTR MaLR -2 419 1 4 735 1306 172 22 18 chr4 19753293 19753343 -135876777 - URR1A DNA MER1_type -176 50 1 4 735 3000 116 16 2 chr4 19753596 19754037 -135876083 - Lx2 LINE L1 0 6997 6551 4 735 342 367 0 21 chr4 19754122 19754264 -135875856 + L1M5 LINE L1 5620 5758 -366 4 735 630 267 53 0 chr4 19754354 19754504 -135875616 - RSINE1 SINE B4 -6 159 2 4 735 753 212 196 0 chr4 19754990 19755169 -135874951 - B3 SINE B2 0 216 3 4 735 457 236 73 0 chr4 19755186 19755309 -135874811 + B1_Mur2 SINE Alu 3 134 -15 4 735 450 0 0 0 chr4 19755309 19755359 -135874761 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 4 735 517 219 25 34 chr4 19755802 19755920 -135874200 + RSINE1 SINE B4 3 119 -46 4 735 569 14 0 14 chr4 19755924 19755995 -135874125 + (TTC)n Simple_repeat Simple_repeat 3 72 0 4 735 1455 49 6 17 chr4 19755997 19756344 -135873776 + (TTCTCC)n Simple_repeat Simple_repeat 1 342 0 4 735 266 257 13 26 chr4 19756480 19756556 -135873564 + B1_Mur1 SINE Alu 75 149 0 4 735 245 220 0 39 chr4 19756691 19756743 -135873377 - PB1D10 SINE Alu -2 115 66 4 735 306 0 0 0 chr4 19757045 19757079 -135873041 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 4 735 1061 50 0 0 chr4 19757759 19757899 -135872221 - L1_Mus1 LINE L1 -245 6322 6183 4 735 1530 107 31 4 chr4 19757899 19758124 -135871996 + L1_Mus1 LINE L1 6336 6566 -1 4 735 1555 98 0 0 chr4 19758176 19758391 -135871729 + L1_Mm LINE L1 5447 5661 -222 4 735 261 83 0 0 chr4 19758391 19758427 -135871693 + (A)n Simple_repeat Simple_repeat 1 36 0 4 735 518 210 0 153 chr4 19758440 19758603 -135871517 + B1_Mus2 SINE Alu 5 142 -5 4 735 15365 70 12 1 chr4 19758677 19761531 -135868589 - L1Md_F2 LINE L1 -3 6579 3695 4 735 4500 106 31 8 chr4 19761534 19761665 -135868455 - L1Md_F LINE L1 -5411 1205 1075 4 735 6815 69 10 5 chr4 19761665 19762553 -135867567 - RLTR13B1 LTR ERVK 0 893 1 4 735 4500 144 42 19 chr4 19762553 19763410 -135866710 - L1Md_F LINE L1 -5626 1098 274 4 735 3002 135 14 0 chr4 19763409 19764439 -135865681 - L1Md_F LINE L1 -4164 1719 675 4 735 348 24 0 0 chr4 19764546 19764587 -135865533 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 735 466 51 0 0 chr4 19764590 19764649 -135865471 - B1_Mus1 SINE Alu -61 87 29 4 735 366 156 0 38 chr4 19764679 19764759 -135865361 - Lx8 LINE L1 -2 7471 7395 4 735 252 317 0 89 chr4 19764932 19764993 -135865127 - ID4_ SINE ID 0 83 26 4 735 2790 176 51 71 chr4 19764993 19765616 -135864504 - RMER19C LTR ERVK 0 611 1 4 735 252 317 0 89 chr4 19765616 19765644 -135864476 - ID4_ SINE ID -58 25 2 4 735 544 316 44 33 chr4 19765644 19765824 -135864296 - MER20 DNA MER1_type -33 186 5 4 735 288 323 0 103 chr4 19767769 19767876 -135862244 + PB1D10 SINE Alu 5 100 -17 4 735 739 280 36 0 chr4 19768882 19769075 -135861045 + B3 SINE B2 3 202 -14 4 735 681 124 15 8 chr4 19769082 19769212 -135860908 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 4 735 21 0 0 0 chr4 19769232 19769253 -135860867 + AT_rich Low_complexity Low_complexity 1 21 0 4 735 437 241 106 11 chr4 19769516 19769703 -135860417 + MTD LTR MaLR 177 419 0 4 735 945 275 33 52 chr4 19769797 19770161 -135859959 - ORR1E LTR MaLR -1 358 2 4 735 315 0 0 0 chr4 19770432 19770467 -135859653 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 4 735 1082 89 0 0 chr4 19770467 19770602 -135859518 - B1_Mus2 SINE Alu -12 135 1 4 735 1180 265 23 21 chr4 19771505 19771936 -135858184 + Lx9 LINE L1 7166 7597 -47 4 735 414 39 0 0 chr4 19772280 19772332 -135857788 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 735 519 45 0 0 chr4 19772934 19773000 -135857120 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 735 423 256 8 23 chr4 19773268 19773400 -135856720 - LTR37A LTR ERV1 0 426 297 4 735 274 292 10 68 chr4 19773565 19773668 -135856452 - MLT1A1 LTR MaLR -4 404 308 4 735 489 208 0 0 chr4 19773749 19773922 -135856198 + CT-rich Low_complexity Low_complexity 2 174 0 4 735 243 191 0 0 chr4 19773961 19774029 -135856091 + CT-rich Low_complexity Low_complexity 1 68 0 4 735 252 121 0 70 chr4 19774527 19774598 -135855522 + G-rich Low_complexity Low_complexity 4 69 0 4 735 26 50 0 0 chr4 19775171 19775211 -135854909 + AT_rich Low_complexity Low_complexity 1 40 0 4 735 1661 207 37 40 chr4 19775352 19775548 -135854572 - ORR1C1 LTR MaLR -1 377 179 4 735 669 13 0 0 chr4 19775548 19775626 -135854494 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 735 1661 207 37 40 chr4 19775626 19775807 -135854313 - ORR1C1 LTR MaLR -200 178 2 4 735 557 260 114 38 chr4 19776864 19777312 -135852808 - L1_Mur3 LINE L1 -2321 3559 3078 4 735 372 286 75 15 chr4 19777351 19777550 -135852570 + RMER17C LTR ERVK 1 211 -199 4 735 1056 137 0 17 chr4 19777535 19777553 -135852567 - B2_Mm2 SINE B2 -19 176 159 4 735 279 0 0 0 chr4 19777553 19777584 -135852536 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 735 1277 44 0 0 chr4 19777584 19777743 -135852377 - B2_Mm1a SINE B2 -33 160 2 4 735 793 138 60 91 chr4 19777743 19777939 -135852181 + RMER17C LTR ERVK 221 410 0 4 735 618 306 80 33 chr4 19778006 19778407 -135851713 - L1_Mur3 LINE L1 -3138 3005 2566 4 735 360 0 0 0 chr4 19778407 19778447 -135851673 + (TTG)n Simple_repeat Simple_repeat 1 40 0 4 735 618 287 88 35 chr4 19778447 19778662 -135851458 - L1_Mur3 LINE L1 -3315 2565 2332 4 735 1820 203 79 10 chr4 19778662 19779056 -135851064 - MTC LTR MaLR 0 421 1 4 735 618 291 87 34 chr4 19779056 19779109 -135851011 - L1_Mur3 LINE L1 -3787 2356 2290 4 735 675 151 0 0 chr4 19780338 19780444 -135849676 + B2_Mm2 SINE B2 2 107 -88 4 735 322 236 296 5 chr4 19781201 19781397 -135848723 - Lx9 LINE L1 -8 7636 7384 4 735 228 238 38 0 chr4 19781667 19781747 -135848373 - L1M5 LINE L1 -2996 3150 3068 4 735 3297 184 65 11 chr4 19781736 19782472 -135847648 - RMER1B Other Other -3 1063 232 4 735 1794 239 5 19 chr4 19782824 19783203 -135846917 + MTD LTR MaLR 32 405 -14 4 735 206 0 69 0 chr4 19783729 19783758 -135846362 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 4 735 643 281 77 6 chr4 19783946 19784114 -135846006 + B3A SINE B2 1 180 -18 4 735 281 366 83 26 chr4 19784749 19784979 -135845141 - MIRm SINE MIR -11 265 23 4 735 231 302 16 0 chr4 19785779 19785842 -135844278 + CT-rich Low_complexity Low_complexity 1 64 0 4 735 185 368 11 11 chr4 19786985 19787073 -135843047 - L2a LINE L2 0 3426 3339 4 735 21 0 0 0 chr4 19787290 19787311 -135842809 + AT_rich Low_complexity Low_complexity 1 21 0 4 735 435 38 0 0 chr4 19787772 19787825 -135842295 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 735 316 427 71 3 chr4 19787959 19788253 -135841867 - L2a LINE L2 -427 2992 2679 4 735 849 229 54 19 chr4 19788273 19788478 -135841642 + B3 SINE B2 1 212 -4 4 735 26 30 0 0 chr4 19788483 19788516 -135841604 + AT_rich Low_complexity Low_complexity 1 33 0 5 735 1925 217 44 13 chr4 19788558 19788946 -135841174 + MTD LTR MaLR 20 419 0 5 735 26 50 0 0 chr4 19790243 19790283 -135839837 + AT_rich Low_complexity Low_complexity 1 40 0 5 735 1785 179 77 11 chr4 19791191 19791542 -135838578 - ORR1D1 LTR MaLR 0 374 1 5 735 288 0 0 0 chr4 19791778 19791810 -135838310 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 91 305 327 53 70 chr4 19791812 19791983 -135838137 - B3A SINE B2 -30 168 1 5 736 1543 310 52 49 chr4 19791985 19792660 -135837460 - Lx8 LINE L1 -220 7253 6577 5 736 3641 191 26 29 chr4 19792660 19793423 -135836697 - RMER13B LTR ERVK 0 908 1 5 736 799 289 13 13 chr4 19793454 19793689 -135836431 - Lx8 LINE L1 -915 6558 6324 5 736 760 233 7 0 chr4 19793714 19793860 -135836260 - B1_Mus2 SINE Alu 0 147 1 5 736 375 247 0 0 chr4 19793991 19794064 -135836056 + B3A SINE B2 1 73 -125 5 736 789 194 0 0 chr4 19794109 19794243 -135835877 - B1_Mus1 SINE Alu -6 142 9 5 736 871 264 14 5 chr4 19795861 19796074 -135834046 + B3 SINE B2 2 216 0 5 736 3652 203 129 23 chr4 19796121 19797032 -135833088 + RMER1B Other Other 45 1052 -14 5 736 567 262 77 107 chr4 19797177 19797430 -135832690 + B4A SINE B4 2 251 -41 5 736 375 23 0 0 chr4 19797430 19797474 -135832646 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 736 567 262 77 107 chr4 19797474 19797519 -135832601 + B4A SINE B4 252 291 -1 5 736 669 63 0 0 chr4 19797550 19797645 -135832475 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 736 382 268 195 0 chr4 19799945 19800068 -135830052 - RSINE1 SINE B4 -15 150 4 5 736 250 189 19 0 chr4 19800715 19800768 -135829352 + A-rich Low_complexity Low_complexity 3 56 0 5 736 1609 258 93 60 chr4 19801077 19801659 -135828461 - RLTR18 LTR ERVK -1 615 15 5 736 248 236 132 53 chr4 19801726 19801802 -135828318 + ID4_ SINE ID 2 83 0 5 736 228 320 82 10 chr4 19802544 19802642 -135827478 + PB1D10 SINE Alu 13 117 0 5 736 3500 302 73 34 chr4 19802718 19804042 -135826078 - MTEb-int LTR MaLR -110 1260 4 5 736 699 247 12 6 chr4 19804032 19804203 -135825917 - MTEb LTR MaLR 0 379 208 5 736 363 317 65 65 chr4 19804383 19804538 -135825582 - RSINE1 SINE B4 -6 159 5 5 736 255 93 0 0 chr4 19804788 19804831 -135825289 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 736 405 0 0 0 chr4 19807319 19807364 -135822756 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 736 235 273 139 43 chr4 19807930 19808045 -135822075 - RLTR9F LTR ERVK -92 323 198 5 736 2529 91 16 13 chr4 19808740 19809118 -135821002 - L1_Mus3 LINE L1 0 6638 6260 5 736 329 263 26 0 chr4 19809446 19809522 -135820598 - ID4_ SINE ID -4 79 2 5 736 330 103 11 54 chr4 19809889 19809981 -135820139 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 736 1152 199 87 46 chr4 19809983 19810330 -135819790 - Lx8 LINE L1 -142 7331 6971 5 736 241 347 100 40 chr4 19810599 19810749 -135819371 + MER5A1 DNA MER1_type 4 162 -4 5 736 216 217 50 0 chr4 19811691 19811751 -135818369 + CT-rich Low_complexity Low_complexity 4 66 0 5 736 240 338 0 0 chr4 19811751 19811828 -135818292 - ID4_ SINE ID -6 77 1 5 736 339 346 36 30 chr4 19812256 19812430 -135817690 + MIR SINE MIR 2 183 -93 5 736 2040 136 101 3 chr4 19812518 19812680 -135817440 + ORR1C2 LTR MaLR 3 189 -195 5 736 360 0 0 0 chr4 19812680 19812720 -135817400 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 736 2040 136 101 3 chr4 19812720 19812905 -135817215 + ORR1C2 LTR MaLR 190 383 -1 5 736 247 333 0 0 chr4 19812905 19812974 -135817146 - ID2 SINE ID -10 73 5 5 736 224 121 0 0 chr4 19813553 19813586 -135816534 + (T)n Simple_repeat Simple_repeat 1 33 0 5 736 247 309 29 0 chr4 19814234 19814302 -135815818 - ID4 SINE ID -2 81 12 5 736 246 341 59 84 chr4 19814922 19815124 -135814996 + MIR SINE MIR 21 217 -45 5 736 477 0 0 0 chr4 19815698 19815751 -135814369 + (GAA)n Simple_repeat Simple_repeat 3 55 0 5 736 248 320 18 115 chr4 19816004 19816117 -135814003 - MIRb SINE MIR -4 264 163 5 736 689 236 81 48 chr4 19816547 19816756 -135813364 - B3 SINE B2 0 216 1 5 736 441 36 0 0 chr4 19817274 19817329 -135812791 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 736 891 264 88 4 chr4 19817333 19817584 -135812536 - B4 SINE B4 -19 273 2 5 736 237 387 94 0 chr4 19817613 19817719 -135812401 - PB1D10 SINE Alu -1 116 1 5 736 180 111 0 0 chr4 19818036 19818063 -135812057 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 736 511 323 22 33 chr4 19818256 19818471 -135811649 - MIR SINE MIR -54 214 2 5 736 1879 189 101 8 chr4 19818701 19819086 -135811034 + MTC LTR MaLR 1 421 0 5 736 302 62 42 0 chr4 19819395 19819443 -135810677 + (GGGAGA)n Simple_repeat Simple_repeat 4 53 0 5 736 335 327 48 0 chr4 19820786 19820890 -135809230 + PB1D7 SINE Alu 2 110 -10 5 736 1463 280 107 19 chr4 19821394 19822144 -135807976 - L1MC3 LINE L1 -344 7441 6626 5 736 276 300 0 14 chr4 19822734 19822805 -135807315 + ID4 SINE ID 6 75 -8 5 736 187 345 0 0 chr4 19823167 19823225 -135806895 + MIRc SINE MIR 178 235 -33 5 736 351 301 108 0 chr4 19823731 19823824 -135806296 + RSINE1 SINE B4 62 164 -1 5 736 837 76 41 0 chr4 19823935 19824080 -135806040 + (TCTCTG)n Simple_repeat Simple_repeat 6 156 0 5 736 423 0 0 0 chr4 19824155 19824202 -135805918 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 736 1143 58 0 0 chr4 19824202 19824341 -135805779 - B1_Mus2 SINE Alu -8 139 1 5 736 427 279 63 14 chr4 19824742 19824884 -135805236 - RSINE1 SINE B4 -15 150 2 5 736 805 235 9 40 chr4 19825821 19826043 -135804077 + B3 SINE B2 2 216 0 5 736 751 192 0 12 chr4 19826337 19826506 -135803614 + CT-rich Low_complexity Low_complexity 2 168 0 5 736 540 0 0 0 chr4 19826515 19826575 -135803545 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 5 736 672 107 25 0 chr4 19826864 19826985 -135803135 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 5 736 198 91 0 0 chr4 19826987 19827020 -135803100 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 5 736 539 66 13 0 chr4 19827329 19827405 -135802715 + (TTTTC)n Simple_repeat Simple_repeat 4 80 0 5 736 202 42 0 0 chr4 19827405 19827429 -135802691 + (TCC)n Simple_repeat Simple_repeat 3 26 0 5 736 372 119 0 0 chr4 19827429 19827488 -135802632 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 736 315 0 0 0 chr4 19827600 19827635 -135802485 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 736 218 337 11 21 chr4 19828107 19828201 -135801919 + MIR SINE MIR 123 215 -47 5 736 594 194 7 35 chr4 19828831 19828975 -135801145 - RMER1C Other Other -3 1339 1200 5 736 536 130 11 0 chr4 19828975 19829067 -135801053 + (GGA)n Simple_repeat Simple_repeat 2 94 0 5 736 1838 196 62 39 chr4 19829067 19829534 -135800586 - RMER1C Other Other -123 1219 742 5 736 276 357 85 0 chr4 19829618 19829747 -135800373 + MER45A DNA Tip100 38 177 -1 5 736 607 296 109 29 chr4 19832521 19832796 -135797324 - MER2 DNA MER2_type -8 337 41 5 736 346 344 88 0 chr4 19833509 19833634 -135796486 + B1F SINE Alu 1 136 -13 5 736 885 85 0 0 chr4 19833641 19833782 -135796338 + (TATATG)n Simple_repeat Simple_repeat 2 142 0 5 736 315 0 0 0 chr4 19833782 19833817 -135796303 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 5 736 242 232 33 7 chr4 19833817 19833887 -135796233 + ID4_ SINE ID 6 78 -74 5 736 274 281 25 58 chr4 19834049 19834170 -135795950 + PB1D10 SINE Alu 1 117 0 5 736 658 232 7 35 chr4 19834191 19834334 -135795786 + ID_B1 SINE B4 80 218 -6 5 736 247 279 60 54 chr4 19834220 19834366 -135795754 - YREP_Mm Unknown Unknown -1518 294 146 5 736 279 0 0 0 chr4 19834366 19834397 -135795723 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 736 247 279 60 54 chr4 19834397 19834417 -135795703 - YREP_Mm Unknown Unknown -1667 145 128 5 736 334 278 14 0 chr4 19834426 19834498 -135795622 + ID4 SINE ID 2 74 -9 5 736 232 353 99 5 chr4 19834673 19834875 -135795245 + L1MC LINE L1 5392 5612 -2270 5 736 210 305 37 0 chr4 19834894 19834976 -135795144 + B1_Mur1 SINE Alu 64 148 -1 5 736 258 258 0 83 chr4 19835056 19835128 -135794992 + ID2 SINE ID 2 67 -16 5 736 904 33 16 0 chr4 19835321 19835417 -135794703 + (GA)n Simple_repeat Simple_repeat 1 97 0 5 736 839 37 9 0 chr4 19835417 19835524 -135794596 + (GAA)n Simple_repeat Simple_repeat 3 110 0 5 736 904 33 16 0 chr4 19835524 19835549 -135794571 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 736 248 226 32 16 chr4 19835776 19835839 -135794281 + CT-rich Low_complexity Low_complexity 3 66 0 5 736 2708 120 9 25 chr4 19836193 19836639 -135793481 - BGLII_B LTR ERVK -2 439 1 5 736 541 330 202 27 chr4 19838173 19838619 -135791501 + MT2A LTR ERVL 6 529 -4 5 736 366 291 150 48 chr4 19839224 19839454 -135790666 + ORR1E LTR MaLR 1 243 -141 5 736 630 228 0 0 chr4 19839477 19839622 -135790498 + L1MA8 LINE L1 5519 5727 -573 5 736 343 286 78 18 chr4 19839631 19839848 -135790272 + L1MA8 LINE L1 5983 6212 -79 5 736 525 188 25 185 chr4 19839880 19840037 -135790083 + B1_Mur1 SINE Alu 9 140 -9 5 736 410 178 21 32 chr4 19840283 19840376 -135789744 - MTEa LTR MaLR 0 379 288 5 736 883 240 57 10 chr4 19840387 19840581 -135789539 + B3 SINE B2 9 211 -5 5 736 928 304 39 35 chr4 19840607 19840893 -135789227 - MTEa LTR MaLR -92 287 1 5 736 409 353 0 0 chr4 19842351 19842467 -135787653 + PB1D10 SINE Alu 1 116 -1 5 736 378 0 0 0 chr4 19842735 19842777 -135787343 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 736 323 202 0 11 chr4 19842805 19842900 -135787220 + GA-rich Low_complexity Low_complexity 1 94 0 5 736 22 56 0 0 chr4 19843129 19843165 -135786955 + AT_rich Low_complexity Low_complexity 1 36 0 5 736 664 301 43 96 chr4 19843165 19843540 -135786580 + ORR1E LTR MaLR 1 355 -4 6 736 180 262 9 19 chr4 19843640 19843745 -135786375 + CT-rich Low_complexity Low_complexity 2 105 0 6 736 232 263 55 0 chr4 19843822 19843883 -135786237 - FLAM_A SINE Alu -51 76 13 6 736 213 254 0 0 chr4 19844172 19844218 -135785902 - MIR SINE MIR -118 158 107 6 736 279 0 0 0 chr4 19844903 19844934 -135785186 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 736 1102 43 0 0 chr4 19845071 19845210 -135784910 - B1_Mus2 SINE Alu 0 147 9 6 736 1442 216 77 20 chr4 19845236 19845586 -135784534 + ORR1D2 LTR MaLR 1 370 0 6 736 216 246 24 169 chr4 19846853 19846936 -135783184 - ID4_ SINE ID -6 77 7 6 736 286 227 252 0 chr4 19847260 19847379 -135782741 + B4A SINE B4 73 221 -71 6 736 556 175 39 0 chr4 19847277 19847380 -135782740 + PB1D9 SINE Alu 9 115 -5 6 736 180 77 0 0 chr4 19847920 19847946 -135782174 + (A)n Simple_repeat Simple_repeat 1 26 0 6 736 480 319 37 21 chr4 19847949 19848138 -135781982 - B3A SINE B2 -5 193 2 6 736 24 0 0 0 chr4 19849978 19850002 -135780118 + AT_rich Low_complexity Low_complexity 1 24 0 6 736 675 193 13 73 chr4 19850042 19850193 -135779927 - B1_Mur4 SINE Alu -7 143 2 6 736 401 239 26 52 chr4 19850225 19850340 -135779780 + PB1D7 SINE Alu 2 113 -7 6 736 180 97 0 0 chr4 19850914 19850945 -135779175 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 736 790 276 5 27 chr4 19851512 19851538 -135778582 - B3A SINE B2 -11 187 164 6 736 432 0 0 0 chr4 19851538 19851586 -135778534 + (TATG)n Simple_repeat Simple_repeat 1 48 0 6 736 790 276 5 27 chr4 19851586 19851745 -135778375 - B3A SINE B2 -35 163 6 6 736 241 337 9 90 chr4 19851750 19851861 -135778259 + MER63D DNA AcHobo 524 625 -436 6 736 393 316 53 11 chr4 19851870 19852059 -135778061 - L1MA9 LINE L1 -219 6093 5897 6 736 345 299 131 10 chr4 19852061 19852267 -135777853 + L1MA9 LINE L1 5627 5857 -332 6 736 1201 53 14 14 chr4 19852311 19852600 -135777520 + (CTGTG)n Simple_repeat Simple_repeat 1 289 0 6 736 408 20 0 0 chr4 19852600 19852648 -135777472 + (GGCTG)n Simple_repeat Simple_repeat 1 49 0 6 736 247 109 22 0 chr4 19853211 19853257 -135776863 - Lx8 LINE L1 -12 7461 7415 6 736 425 202 114 9 chr4 19853757 19853862 -135776258 - PB1D10 SINE Alu -1 116 1 6 736 1126 72 0 35 chr4 19854841 19855013 -135775107 - L1Md_F2 LINE L1 -1 6581 6416 6 736 28 29 0 0 chr4 19856032 19856067 -135774053 + AT_rich Low_complexity Low_complexity 1 35 0 6 736 568 289 46 23 chr4 19856679 19856895 -135773225 + ID_B1 SINE B4 1 221 -3 6 736 688 231 7 7 chr4 19856897 19857041 -135773079 + B1F SINE Alu 1 144 -5 6 736 486 335 36 13 chr4 19857596 19857820 -135772300 + MER67D LTR ERV1 208 436 -78 6 736 2468 173 55 18 chr4 19857966 19858472 -135771648 + RLTR11A2 LTR ERVK 3 527 0 6 736 441 0 0 0 chr4 19859470 19859519 -135770601 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 736 351 0 0 0 chr4 19859519 19859557 -135770563 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 736 477 272 93 0 chr4 19860870 19860989 -135769131 - B1F SINE Alu -10 139 1 6 736 261 348 161 54 chr4 19860989 19861049 -135769071 - B4 SINE B4 -183 109 34 6 736 724 245 123 18 chr4 19861159 19861379 -135768741 + MTEb LTR MaLR 3 245 -134 6 736 183 42 0 0 chr4 19862041 19862065 -135768055 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 736 483 333 120 52 chr4 19862411 19862661 -135767459 + B4A SINE B4 21 287 -5 6 736 475 230 15 0 chr4 19863427 19863541 -135766579 + PB1D9 SINE Alu 23 142 -6 6 736 233 226 0 54 chr4 19863491 19863547 -135766573 + ID_B1 SINE B4 172 224 0 6 736 264 331 28 35 chr4 19863575 19863719 -135766401 + B3 SINE B2 28 170 -46 6 736 450 0 0 0 chr4 19863779 19863829 -135766291 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 736 1099 59 0 0 chr4 19863829 19863964 -135766156 - B1_Mus1 SINE Alu -12 136 2 6 736 247 270 91 45 chr4 19864388 19864454 -135765666 - B1F1 SINE Alu -3 114 46 6 736 237 254 132 15 chr4 19864397 19864465 -135765655 - ID_B1 SINE B4 -42 182 107 6 736 4379 190 34 0 chr4 19864493 19865344 -135764776 - Lx3C LINE L1 -2 6974 6095 6 736 25 0 0 0 chr4 19865606 19865631 -135764489 + AT_rich Low_complexity Low_complexity 1 25 0 6 736 373 188 2 30 chr4 19865631 19865716 -135764404 - PB1D10 SINE Alu -4 123 41 6 736 615 51 0 0 chr4 19866122 19866201 -135763919 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 6 736 254 378 0 0 chr4 19866211 19866285 -135763835 + ID4 SINE ID 1 74 -9 6 736 293 352 9 45 chr4 19866823 19866933 -135763187 + PB1D10 SINE Alu 1 106 -11 6 736 540 324 72 81 chr4 19867807 19868166 -135761954 - ORR1E LTR MaLR 0 359 4 6 736 461 264 0 0 chr4 19872487 19872593 -135757527 - MTD LTR MaLR -313 106 1 6 736 4375 106 42 15 chr4 19873102 19873772 -135756348 + Lx LINE L1 5967 6654 0 6 736 339 304 70 40 chr4 19873931 19874130 -135755990 + L1MEg LINE L1 1179 1383 -4701 6 736 26 30 0 0 chr4 19874147 19874180 -135755940 + AT_rich Low_complexity Low_complexity 1 33 0 6 736 2154 196 78 62 chr4 19874304 19874866 -135755254 + Lx5 LINE L1 6479 7049 -1 6 736 509 294 40 34 chr4 19874882 19875030 -135755090 + B3A SINE B2 27 175 -23 6 736 287 302 0 0 chr4 19876024 19876087 -135754033 - RSINE1 SINE B4 -97 68 6 6 736 1980 128 26 53 chr4 19876220 19876598 -135753522 - RLTR9A LTR ERVK 0 368 1 6 736 367 125 27 27 chr4 19876599 19876673 -135753447 - ETnERV2-int LTR ERVK -2 7404 7331 6 736 386 129 42 14 chr4 19876738 19876809 -135753311 - RLTR9A LTR ERVK -295 73 1 6 736 27 29 0 0 chr4 19876910 19876944 -135753176 + AT_rich Low_complexity Low_complexity 1 34 0 6 736 456 19 0 0 chr4 19877423 19877476 -135752644 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 736 711 296 31 22 chr4 19877504 19877729 -135752391 - B4 SINE B4 -44 248 22 6 736 215 287 67 33 chr4 19877777 19877867 -135752253 + PB1D10 SINE Alu 22 114 -3 6 736 487 291 39 39 chr4 19878822 19879004 -135751116 - B3A SINE B2 -16 182 1 6 736 874 195 118 15 chr4 19879040 19879243 -135750877 + URR1A DNA MER1_type 1 224 -2 6 736 223 68 43 43 chr4 19880051 19880097 -135750023 + GA-rich Low_complexity Low_complexity 3 48 0 6 736 1237 182 67 47 chr4 19880104 19880459 -135749661 + ORR1D1 LTR MaLR 12 374 0 6 736 362 318 84 111 chr4 19880683 19880945 -135749175 + ORR1E LTR MaLR 1 255 -104 6 736 250 333 0 12 chr4 19881185 19881267 -135748853 + BC1_Mm scRNA scRNA 4 84 -68 6 736 46 45 0 0 chr4 19881667 19881734 -135748386 + AT_rich Low_complexity Low_complexity 1 67 0 6 736 1135 302 110 27 chr4 19882102 19882691 -135747429 - Lx8 LINE L1 -5 7468 6831 6 736 21 0 0 0 chr4 19882700 19882721 -135747399 + AT_rich Low_complexity Low_complexity 1 21 0 6 736 311 347 15 0 chr4 19882870 19883135 -135746985 + L1_Mur3 LINE L1 1546 1814 -4066 6 736 306 330 67 43 chr4 19883136 19883345 -135746775 + L1MEg LINE L1 1332 1545 -4539 6 736 3214 249 78 11 chr4 19883377 19884482 -135745638 - RMER1A Other Other -12 1018 27 6 736 907 268 117 17 chr4 19885921 19886221 -135743899 - MLT1A0 LTR MaLR -23 342 13 6 736 2945 254 92 75 chr4 19886464 19886997 -135743123 + ETnERV2-int LTR ERVK 944 1463 -3943 6 736 180 0 0 0 chr4 19886997 19887017 -135743103 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 736 4921 131 50 16 chr4 19887017 19887156 -135742964 + ETnERV2-int LTR ERVK 2516 2661 -4745 6 736 4625 115 24 80 chr4 19887156 19888007 -135742113 + RLTR13B4 LTR ERVK 1 803 0 6 736 4921 138 45 25 chr4 19888007 19888849 -135741271 + ETnERV2-int LTR ERVK 1994 3448 -3958 6 736 14247 101 26 5 chr4 19889101 19891193 -135738927 + ETnERV2-int LTR ERVK 3441 5576 -1830 6 736 2068 115 19 9 chr4 19891193 19891518 -135738602 + RLTR9E LTR ERVK 82 409 0 6 736 2357 129 13 0 chr4 19891518 19891904 -135738216 - L1_Mur2 LINE L1 -600 5277 4887 6 736 7636 124 35 14 chr4 19891902 19892479 -135737641 - L1_Mur2 LINE L1 -3226 2651 2050 6 736 313 22 43 0 chr4 19892479 19892525 -135737595 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 736 7636 122 29 8 chr4 19892525 19894023 -135736097 - L1_Mur2 LINE L1 -3828 2049 539 6 736 486 248 49 8 chr4 19894597 19894719 -135735401 - ETnERV2-int LTR ERVK -210 7196 7070 6 736 872 73 0 16 chr4 19894726 19894852 -135735268 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 6 736 2628 170 132 29 chr4 19895950 19896501 -135733619 + RMER19C LTR ERVK 1 608 -3 6 736 1084 43 0 0 chr4 19896621 19896759 -135733361 - L1Md_A LINE L1 -523 6059 5922 6 736 4544 25 0 0 chr4 19896760 19897282 -135732838 + L1Md_T LINE L1 6061 6582 0 6 736 1344 54 0 0 chr4 19898420 19898588 -135731532 - L1_Mus1 LINE L1 -221 6346 6179 6 736 1736 77 0 4 chr4 19898588 19898823 -135731297 + L1_Mus1 LINE L1 6333 6566 -1 6 736 1560 314 42 17 chr4 19898924 19899711 -135730409 + Lx7 LINE L1 6641 7473 0 6 736 255 268 24 0 chr4 19899747 19899829 -135730291 + L1M4 LINE L1 5531 5614 -570 6 736 450 206 154 29 chr4 19899992 19900167 -135729953 - Lx5 LINE L1 0 7050 6854 6 736 394 175 49 12 chr4 19900189 19900270 -135729850 - Lx5 LINE L1 -547 6503 6420 6 736 660 152 0 0 chr4 19900291 19900396 -135729724 - L1_Mur2 LINE L1 -647 5230 5126 6 736 338 293 140 26 chr4 19900720 19900913 -135729207 - MER20 DNA MER1_type -4 215 1 6 736 295 254 15 0 chr4 19901372 19901439 -135728681 + RMER5 LTR ERV1 1 68 -466 6 736 3311 119 129 0 chr4 19901439 19902012 -135728108 + Lx2 LINE L1 5847 6493 -504 6 736 220 122 20 39 chr4 19902261 19902312 -135727808 + A-rich Low_complexity Low_complexity 2 51 0 6 736 22 56 0 0 chr4 19902656 19902692 -135727428 + AT_rich Low_complexity Low_complexity 1 36 0 6 736 246 264 0 0 chr4 19904060 19904113 -135726007 + MIRm SINE MIR 222 274 -2 6 736 747 216 14 0 chr4 19904797 19904936 -135725184 - B1_Mus1 SINE Alu -6 142 2 6 736 31 21 0 20 chr4 19905374 19905397 -135724723 + AT_rich Low_complexity Low_complexity 1 23 0 7 736 2769 42 0 0 chr4 19905397 19905729 -135724391 - L1Md_T LINE L1 0 6582 6251 7 736 31 21 0 20 chr4 19905729 19905754 -135724366 + AT_rich Low_complexity Low_complexity 1 25 0 7 736 739 290 39 0 chr4 19905891 19906098 -135724022 + B3 SINE B2 2 216 0 7 736 316 342 115 36 chr4 19906608 19906887 -135723233 - Kanga1b DNA Tc2 -230 549 249 7 736 254 277 36 52 chr4 19906970 19907164 -135722956 + L1MB4 LINE L1 5590 5780 -400 7 736 987 284 126 40 chr4 19907218 19907571 -135722549 - MTD LTR MaLR -4 375 11 7 736 377 307 182 14 chr4 19907593 19907890 -135722230 + L1MB4 LINE L1 5825 6171 -9 7 736 666 235 8 0 chr4 19908042 19908174 -135721946 - B1_Mur1 SINE Alu -15 134 2 7 736 289 336 37 0 chr4 19908190 19908297 -135721823 - ID_B1 SINE B4 -48 176 66 7 736 3360 30 25 0 chr4 19908843 19909244 -135720876 - RLTR10A LTR ERVK 0 411 1 7 736 519 17 0 0 chr4 19909529 19909589 -135720531 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 736 205 171 0 0 chr4 19909589 19909630 -135720490 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 736 698 316 90 47 chr4 19909634 19909913 -135720207 - B4A SINE B4 0 292 2 7 736 1217 38 19 0 chr4 19909932 19910090 -135720030 - L1Md_F2 LINE L1 -12 6570 6410 7 736 1633 280 93 49 chr4 19910119 19911073 -135719047 - Lx9 LINE L1 -1 7643 6648 7 736 593 300 113 17 chr4 19911220 19911451 -135718669 + MLT1C LTR MaLR 6 258 -209 7 736 489 323 123 10 chr4 19911856 19912059 -135718061 + B4A SINE B4 6 231 -61 7 736 192 149 0 0 chr4 19912080 19912127 -135717993 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 7 736 542 99 11 0 chr4 19912219 19912310 -135717810 + (CA)n Simple_repeat Simple_repeat 1 92 0 7 736 632 226 32 0 chr4 19912424 19912548 -135717572 + B3A SINE B2 24 151 -47 7 736 276 30 0 0 chr4 19912966 19912999 -135717121 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 7 736 661 160 6 82 chr4 19913005 19913175 -135716945 - Lx3B LINE L1 -4 6969 6813 7 736 2026 61 0 0 chr4 19913356 19913619 -135716501 + L1Md_F3 LINE L1 5324 5586 -297 7 736 7945 42 4 3 chr4 19913620 19914602 -135715518 + L1Md_F3 LINE L1 5588 6570 -14 7 736 5496 109 9 11 chr4 19914785 19915586 -135714534 + Lx2 LINE L1 6193 6991 -6 7 736 469 317 8 8 chr4 19915612 19915736 -135714384 + PB1 SINE Alu 1 124 -3 7 736 527 43 0 14 chr4 19915877 19915948 -135714172 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 736 1098 141 11 26 chr4 19916110 19916299 -135713821 + URR1B DNA MER1_type 40 225 0 7 736 361 278 44 73 chr4 19916299 19916327 -135713793 - CYRA11_Mm Unknown Y-chromosome -450 167 146 7 736 676 271 176 88 chr4 19916999 19917294 -135712826 + MTE2b LTR MaLR 21 341 -38 7 736 4347 190 56 92 chr4 19917295 19918558 -135711562 + RMER12 LTR ERVK 1 1234 -88 7 736 22 0 0 0 chr4 19918593 19918615 -135711505 + AT_rich Low_complexity Low_complexity 1 22 0 7 736 525 309 40 25 chr4 19918620 19918819 -135711301 + RMER12 LTR ERVK 1121 1322 0 7 736 377 332 116 19 chr4 19919930 19920145 -135709975 + LTR33 LTR ERVL 280 515 0 7 736 2497 73 0 18 chr4 19920941 19921276 -135708844 + L1_Mus2 LINE L1 6238 6566 0 7 736 698 209 40 74 chr4 19921305 19921507 -135708613 + B3A SINE B2 2 196 -2 7 736 2902 226 53 55 chr4 19921524 19922049 -135708071 + Lx7 LINE L1 6495 7352 -344 7 736 369 0 0 0 chr4 19922049 19922090 -135708030 + (TATTG)n Simple_repeat Simple_repeat 2 42 0 7 736 2902 225 53 57 chr4 19922090 19922441 -135707679 + Lx7 LINE L1 7353 7696 0 7 736 651 229 0 94 chr4 19922540 19922699 -135707421 - B1_Mur1 SINE Alu -5 144 1 7 11 16076 173 29 16 chr4 19922916 19926554 -135703566 - Lx5 LINE L1 -938 6112 2416 7 737 273 29 0 0 chr4 19927144 19927178 -135702942 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 737 591 328 112 19 chr4 19927186 19927444 -135702676 - B4A SINE B4 -10 282 1 7 737 1066 88 0 39 chr4 19927527 19927681 -135702439 - B1_Mus1 SINE Alu 0 148 1 7 737 482 338 108 92 chr4 19927699 19928079 -135702041 + MLT2B3 LTR ERVL 10 401 -153 7 737 1418 174 216 81 chr4 19928079 19928472 -135701648 + RLTR41 LTR ERV1 1 446 0 7 737 482 338 108 92 chr4 19928472 19928612 -135701508 + MLT2B3 LTR ERVL 402 537 -17 7 737 2173 12 0 0 chr4 19928752 19929008 -135701112 + L1Md_F2 LINE L1 5331 5586 -297 7 737 8124 46 2 2 chr4 19929008 19930004 -135700116 + L1Md_F2 LINE L1 5587 6582 0 7 737 394 265 25 41 chr4 19930064 19930186 -135699934 + PB1D7 SINE Alu 1 120 0 7 737 205 246 14 28 chr4 19930186 19930197 -135699923 + (CAA)n Simple_repeat Simple_repeat 1 11 0 7 737 225 94 0 0 chr4 19930197 19930229 -135699891 + (CCA)n Simple_repeat Simple_repeat 3 34 0 7 737 240 211 0 0 chr4 19930229 19930307 -135699813 + (CACCAT)n Simple_repeat Simple_repeat 1 78 0 7 737 183 42 0 0 chr4 19930307 19930331 -135699789 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 7 737 1996 134 202 31 chr4 19930614 19931069 -135699051 - RMER16 LTR ERVK 0 533 1 7 737 25 65 0 0 chr4 19931215 19931261 -135698859 + AT_rich Low_complexity Low_complexity 1 46 0 7 737 1980 195 116 25 chr4 19931333 19931806 -135698314 + RMER20A LTR ERVK 1 516 0 7 737 691 197 0 43 chr4 19931806 19931867 -135698253 - B3 SINE B2 -82 134 78 7 737 2031 139 14 45 chr4 19931867 19932290 -135697830 - RMER17C LTR ERVK 0 410 1 7 737 691 197 0 43 chr4 19932290 19932366 -135697754 - B3 SINE B2 -139 77 3 7 737 812 230 208 3 chr4 19932420 19932753 -135697367 - MTD LTR MaLR 0 419 19 7 737 831 112 0 0 chr4 19933033 19933158 -135696962 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 7 737 5050 33 10 0 chr4 19933196 19933800 -135696320 - L1Md_F2 LINE L1 -3 6579 5970 7 737 22 0 0 0 chr4 19933898 19933920 -135696200 + AT_rich Low_complexity Low_complexity 1 22 0 7 737 1561 173 27 99 chr4 19933923 19934397 -135695723 - RMER10A LTR ERVL -2 440 1 7 737 183 273 0 22 chr4 19936319 19936364 -135693756 - L2b LINE L2 -38 3337 3294 7 737 225 154 0 0 chr4 19936839 19936878 -135693242 + T-rich Low_complexity Low_complexity 2 40 0 7 737 24 32 0 0 chr4 19937401 19937432 -135692688 + AT_rich Low_complexity Low_complexity 1 31 0 7 737 434 143 83 101 chr4 19938524 19938633 -135691487 + MT2B LTR ERVL 152 258 -343 7 737 780 174 8 0 chr4 19938535 19938667 -135691453 + B1_Mur4 SINE Alu 9 141 -9 7 737 603 62 0 0 chr4 19938794 19938874 -135691246 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 737 195 307 26 26 chr4 19939200 19939277 -135690843 + MIRb SINE MIR 126 202 -66 7 737 973 116 0 14 chr4 19940852 19940992 -135689128 + B1_Mus1 SINE Alu 1 138 -10 7 737 257 0 30 0 chr4 19940992 19941025 -135689095 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 737 1014 73 0 0 chr4 19941026 19941162 -135688958 + (GAA)n Simple_repeat Simple_repeat 3 138 0 7 737 407 286 67 0 chr4 19941263 19941368 -135688752 - MLT1H2 LTR MaLR -141 348 237 7 737 950 277 56 28 chr4 19942019 19942342 -135687778 - MLT1A0 LTR MaLR 0 365 34 7 737 507 361 15 0 chr4 19942323 19942456 -135687664 + RSINE1 SINE B4 12 146 -19 7 737 396 197 14 0 chr4 19942611 19942682 -135687438 - RMER1C Other Other -681 661 590 7 737 422 203 8 23 chr4 19942696 19942827 -135687293 + CT-rich Low_complexity Low_complexity 1 129 0 7 737 475 261 14 28 chr4 19942830 19942972 -135687148 + RMER1C Other Other 1202 1341 -1 7 737 344 303 41 20 chr4 19943115 19943263 -135686857 - PB1 SINE Alu -1 148 1 7 737 421 221 134 0 chr4 19943587 19943736 -135686384 + MER53 DNA hAT 22 190 -3 7 737 837 277 137 13 chr4 19944052 19944286 -135685834 + B4A SINE B4 16 278 -14 7 737 252 0 0 0 chr4 19944302 19944330 -135685790 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 737 234 91 0 0 chr4 19944787 19944820 -135685300 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 737 22 35 0 0 chr4 19945726 19945755 -135684365 + AT_rich Low_complexity Low_complexity 1 29 0 7 737 1132 82 0 0 chr4 19945755 19945901 -135684219 - B1_Mm SINE Alu 0 147 2 7 737 568 272 24 37 chr4 19946101 19946265 -135683855 - B3A SINE B2 -35 163 2 7 737 414 186 0 0 chr4 19946618 19946704 -135683416 + CT-rich Low_complexity Low_complexity 2 87 0 7 737 496 252 19 0 chr4 19946705 19946808 -135683312 - ID_B1 SINE B4 -6 218 114 7 737 355 217 0 0 chr4 19946829 19946889 -135683231 - RSINE1 SINE B4 -99 66 7 7 737 405 78 0 0 chr4 19946938 19947002 -135683118 - L1_Mus3 LINE L1 -6 6632 6569 7 737 241 336 23 15 chr4 19947802 19947932 -135682188 - MLT1A1 LTR MaLR -274 134 4 7 737 231 231 185 37 chr4 19948753 19948834 -135681286 + B1F1 SINE Alu 1 93 -56 7 737 964 316 51 15 chr4 19948989 19949262 -135680858 - B4 SINE B4 -4 288 6 7 737 1077 39 0 8 chr4 19949293 19949424 -135680696 + B1_Mus2 SINE Alu 1 130 -17 7 737 29 47 0 0 chr4 19950257 19950300 -135679820 + AT_rich Low_complexity Low_complexity 1 43 0 7 737 771 251 86 47 chr4 19950564 19950819 -135679301 - B4A SINE B4 -20 272 8 7 737 530 197 8 0 chr4 19951833 19951950 -135678170 + CT-rich Low_complexity Low_complexity 4 121 0 7 737 879 145 0 0 chr4 19951992 19952123 -135677997 - B1_Mur4 SINE Alu -19 131 1 7 737 601 262 62 12 chr4 19952764 19952926 -135677194 - B3A SINE B2 0 198 29 7 737 1078 101 0 0 chr4 19953159 19953307 -135676813 + B1_Mus1 SINE Alu 1 148 0 7 737 455 219 54 68 chr4 19953637 19953784 -135676336 - B3A SINE B2 0 195 51 7 737 527 260 105 108 chr4 19953877 19954192 -135675928 - RLTR18B LTR ERVK 0 512 199 7 737 1028 79 29 0 chr4 19954209 19954348 -135675772 - B1_Mus2 SINE Alu 0 147 5 8 737 649 234 122 31 chr4 19954393 19954622 -135675498 - RLTR18B LTR ERVK -236 276 27 8 737 1407 167 22 33 chr4 19954963 19955235 -135674885 - RMER10B LTR ERVL -129 269 1 8 737 23 0 0 0 chr4 19956779 19956802 -135673318 + AT_rich Low_complexity Low_complexity 1 23 0 8 737 908 201 79 15 chr4 19958533 19958735 -135671385 - B3 SINE B2 -1 215 1 8 737 610 129 0 0 chr4 19958793 19958886 -135671234 - ORR1C2 LTR MaLR 0 378 286 8 737 957 239 28 20 chr4 19958890 19959152 -135670968 - ORR1C2-int LTR MaLR -913 667 392 8 737 2068 222 7 2 chr4 19959532 19959939 -135670181 - ORR1C2-int LTR MaLR -944 426 18 8 737 1312 204 47 142 chr4 19959939 19960361 -135669759 - ORR1C2 LTR MaLR -2 382 1 8 737 1288 222 104 26 chr4 19960610 19960643 -135669477 - ORR1D1 LTR MaLR 0 374 340 8 737 3523 106 15 82 chr4 19960643 19961250 -135668870 - RMER2 LTR ERV1 0 567 2 8 737 1288 222 104 26 chr4 19961250 19961563 -135668557 - ORR1D1 LTR MaLR -35 339 1 8 737 247 296 56 0 chr4 19962625 19962696 -135667424 - RSINE1 SINE B4 0 165 91 8 737 337 272 24 179 chr4 19962801 19963014 -135667106 - RSINE1 SINE B4 -113 179 1 8 737 3524 46 7 0 chr4 19963601 19964054 -135666066 - L1_Mus2 LINE L1 -514 6052 5597 8 737 3524 75 2 8 chr4 19964058 19964526 -135665594 + L1_Mus2 LINE L1 6102 6566 0 8 737 541 264 117 36 chr4 19964539 19964660 -135665460 - L1MA4A LINE L1 -373 5930 5790 8 737 405 0 0 0 chr4 19964660 19964705 -135665415 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 737 541 264 117 36 chr4 19964705 19964890 -135665230 - L1MA4A LINE L1 -514 5789 5601 8 737 605 303 28 0 chr4 19964950 19965092 -135665028 - RSINE1 SINE B4 -17 148 3 8 737 497 289 94 9 chr4 19965093 19965520 -135664600 - L1MA4A LINE L1 -690 5607 5107 8 737 302 247 38 25 chr4 19965520 19965577 -135664543 + MTE2b LTR MaLR 2 59 -320 8 737 4414 199 73 57 chr4 19965577 19966690 -135663430 + RLTR21 LTR ERVK 2 1232 -172 8 737 212 312 78 0 chr4 19966737 19966752 -135663368 + B4 SINE B4 66 85 -207 8 737 320 299 102 0 chr4 19966752 19966855 -135663265 + PB1D9 SINE Alu 1 121 -29 8 737 372 22 0 0 chr4 19967015 19967060 -135663060 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 737 272 291 135 3 chr4 19967063 19967152 -135662968 - PB1D9 SINE Alu -21 99 3 8 737 231 61 0 0 chr4 19967179 19967212 -135662908 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 737 290 142 46 19 chr4 19969043 19969151 -135660969 + (CCCCG)n Simple_repeat Simple_repeat 1 111 0 8 737 402 21 0 0 chr4 19970233 19970280 -135659840 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 737 335 321 135 111 chr4 19970862 19970898 -135659222 - B3 SINE B2 -2 214 104 8 737 685 255 35 0 chr4 19970898 19971039 -135659081 - RSINE1 SINE B4 0 165 20 8 737 335 321 135 111 chr4 19971039 19971069 -135659051 - B3 SINE B2 -2 103 3 8 737 228 200 44 0 chr4 19971639 19971684 -135658436 - ID4 SINE ID -3 80 34 8 737 331 329 57 114 chr4 19971926 19972348 -135657772 + L2a LINE L2 3029 3426 0 8 737 2441 185 58 10 chr4 19972659 19973162 -135656958 + RLTR11A2 LTR ERVK 1 527 0 8 737 290 136 0 0 chr4 19973930 19973974 -135656146 + B3A SINE B2 1 44 -154 8 737 468 0 0 0 chr4 19973975 19974027 -135656093 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 737 333 0 0 0 chr4 19974027 19974063 -135656057 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 737 453 81 0 0 chr4 19975159 19975221 -135654899 + (T)n Simple_repeat Simple_repeat 1 62 0 8 737 1185 61 0 0 chr4 19975221 19975368 -135654752 - B1_Mus2 SINE Alu 0 147 1 8 737 206 169 41 27 chr4 19977886 19978032 -135652088 + GA-rich Low_complexity Low_complexity 1 148 0 8 737 277 232 121 12 chr4 19978645 19978728 -135651392 + RSINE1 SINE B4 4 95 -70 8 737 621 154 0 0 chr4 19978743 19978853 -135651267 + CT-rich Low_complexity Low_complexity 4 113 0 8 737 623 155 26 0 chr4 19979558 19979713 -135650407 + (TA)n Simple_repeat Simple_repeat 2 160 0 8 737 551 333 63 49 chr4 19980285 19980651 -135649469 - RMER5 LTR ERV1 -133 401 31 8 737 699 101 0 0 chr4 19981054 19981173 -135648947 + (TC)n Simple_repeat Simple_repeat 2 120 0 8 737 657 0 0 0 chr4 19981784 19981857 -135648263 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 8 737 1257 94 22 0 chr4 19981857 19982038 -135648082 - B2_Mm1t SINE B2 -6 187 3 8 737 494 322 106 40 chr4 19982346 19982621 -135647499 - MER21B LTR ERV1 -521 342 50 8 737 478 295 57 23 chr4 19983526 19983703 -135646417 - Lx8 LINE L1 -592 6881 6699 8 737 1293 255 55 6 chr4 19983948 19984311 -135645809 - Lx8 LINE L1 -829 6644 6264 8 737 812 239 9 13 chr4 19984390 19984590 -135645530 - B3A SINE B2 -13 203 2 8 737 460 243 9 36 chr4 19986355 19986466 -135643654 + PB1D9 SINE Alu 2 109 -11 8 737 393 272 222 9 chr4 19986755 19986985 -135643135 + L1M5 LINE L1 4988 5266 -880 8 737 225 247 225 0 chr4 19987366 19987455 -135642665 + PB1D10 SINE Alu 1 109 -8 8 737 312 288 93 31 chr4 19987726 19987855 -135642265 - B1F1 SINE Alu 0 149 13 8 737 267 331 109 8 chr4 19988383 19988511 -135641609 - MLT1A1 LTR MaLR 0 408 268 8 737 696 222 0 0 chr4 19989536 19989716 -135640404 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 737 251 295 26 0 chr4 19990775 19990853 -135639267 + ID4 SINE ID 2 81 -2 8 737 823 179 7 20 chr4 19991549 19991697 -135638423 + B1_Mm SINE Alu 1 146 -1 8 737 357 311 0 70 chr4 19993732 19993846 -135636274 - B3A SINE B2 -92 106 1 8 737 268 346 91 7 chr4 19994097 19994251 -135635869 - FordPrefect DNA Tip100 -267 1416 1250 8 737 2300 97 19 12 chr4 19994701 19995026 -135635094 + ORR1A2 LTR MaLR 1 327 0 8 737 695 265 29 33 chr4 19995415 19995643 -135634477 + MTC-int LTR MaLR 344 545 -713 8 737 423 224 164 0 chr4 19995860 19996016 -135634104 + Lx8 LINE L1 4424 4636 -1507 8 737 21 57 0 0 chr4 19996065 19996100 -135634020 + AT_rich Low_complexity Low_complexity 1 35 0 8 737 245 227 30 0 chr4 19996240 19996306 -135633814 + Lx8 LINE L1 5282 5349 -531 8 737 1428 260 90 30 chr4 19997230 19998021 -135632099 + Lx8 LINE L1 5319 6203 -1270 8 737 772 29 19 0 chr4 19998021 19998124 -135631996 + (GA)n Simple_repeat Simple_repeat 2 106 0 8 737 1088 304 107 43 chr4 19998124 19998348 -135631772 + Lx8 LINE L1 6204 6433 -1040 8 737 219 36 0 0 chr4 19998632 19998660 -135631460 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 737 458 279 88 40 chr4 19998955 19999183 -135630937 - RLTR16 LTR ERVK -243 262 24 8 737 2094 231 90 11 chr4 19999390 19999999 -135630121 + Lx8 LINE L1 6421 7077 -396 8 737 390 200 11 11 chr4 20000000 20000091 -135630029 + Lx8 LINE L1 7079 7169 -304 1 737 713 278 123 58 chr4 20000108 20000388 -135629732 + MTD LTR MaLR 18 318 -101 2 737 423 213 44 0 chr4 20000388 20000494 -135629626 + B3 SINE B2 2 118 -77 3 737 1866 115 40 3 chr4 20000938 20001235 -135628885 + RLTR13D5 LTR ERVK 716 1023 0 4 737 227 229 0 88 chr4 20001235 20001326 -135628794 + Lx8 LINE L1 7382 7464 -9 1 737 208 244 0 0 chr4 20001363 20001408 -135628712 + GA-rich Low_complexity Low_complexity 4 48 0 5 737 485 339 0 0 chr4 20001829 20001941 -135628179 + B1F2 SINE Alu 3 114 -35 6 737 510 194 0 41 chr4 20002525 20002622 -135627498 + RMER19C LTR ERVK 519 611 0 7 737 1398 72 0 35 chr4 20003187 20003389 -135626731 + L1_Mus1 LINE L1 6371 6565 -2 8 737 1485 162 70 24 chr4 20003752 20004070 -135626050 + RLTR13B1 LTR ERVK 1 348 -766 9 737 1178 59 0 0 chr4 20004070 20004222 -135625898 - L1Md_F2 LINE L1 -440 6142 5991 1 737 2964 65 0 20 chr4 20004222 20004616 -135625504 + L1Md_F2 LINE L1 6181 6566 -16 1 737 180 0 0 0 chr4 20004618 20004638 -135625482 + (CAT)n Simple_repeat Simple_repeat 2 21 0 1 737 1226 222 229 29 chr4 20004662 20005334 -135624786 + RLTR13D2 LTR ERVK 282 1023 0 1 737 234 0 0 0 chr4 20005430 20005456 -135624664 + (A)n Simple_repeat Simple_repeat 1 26 0 1 737 1045 309 33 17 chr4 20005484 20005846 -135624274 - MTE2a LTR MaLR -11 368 1 1 737 3458 98 2 88 chr4 20005847 20006415 -135623705 - MURVY-LTR LTR ERV1 0 519 1 1 737 429 20 0 0 chr4 20006561 20006611 -135623509 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 737 4893 256 28 39 chr4 20006643 20007857 -135622263 - Lx7 LINE L1 -333 7363 6181 1 737 3264 48 5 0 chr4 20007857 20008251 -135621869 - MTA_Mm LTR MaLR 0 396 1 1 737 4893 256 28 39 chr4 20008251 20008541 -135621579 - Lx7 LINE L1 -1516 6180 5875 1 737 6421 40 6 23 chr4 20008542 20010153 -135619967 + L1Md_T LINE L1 418 1995 -3888 1 737 3557 19 0 0 chr4 20010152 20010581 -135619539 + L1Md_T LINE L1 5158 5586 -297 1 737 8338 39 0 0 chr4 20010581 20011577 -135618543 + L1Md_T LINE L1 5587 6582 0 1 737 17766 169 84 26 chr4 20011580 20012330 -135617790 - Lx7 LINE L1 0 5880 5103 1 737 396 0 0 0 chr4 20012330 20012374 -135617746 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 737 17766 169 84 26 chr4 20012374 20015163 -135614957 - Lx7 LINE L1 -778 5102 2076 1 737 447 19 0 0 chr4 20015163 20015215 -135614905 + (TGG)n Simple_repeat Simple_repeat 2 53 0 2 737 17766 169 84 26 chr4 20015215 20015794 -135614326 - Lx7 LINE L1 -3805 2075 1523 1 737 3214 124 3 17 chr4 20015797 20016329 -135613791 + RLTR13C1 LTR ERVK 1 635 -479 2 737 3119 117 196 24 chr4 20016329 20017391 -135612729 - RMER17C-int LTR ERVK -354 2884 1538 2 737 378 0 0 0 chr4 20017391 20017433 -135612687 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 737 1082 119 88 5 chr4 20017433 20017500 -135612620 - RMER17C-int LTR ERVK -1701 1537 1470 2 737 301 228 74 25 chr4 20017500 20017581 -135612539 + RLTR25A LTR ERVK 498 582 -521 2 737 787 75 0 0 chr4 20017518 20017625 -135612495 + B1_Mm SINE Alu 41 147 0 2 737 261 83 0 0 chr4 20017625 20017661 -135612459 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 2 737 268 191 79 0 chr4 20018012 20018075 -135612045 - 7SLRNA srpRNA srpRNA -62 252 185 2 737 2712 196 81 36 chr4 20018833 20019404 -135610716 - RMER17C-int LTR ERVK -2551 687 81 2 737 2201 239 73 20 chr4 20019404 20020061 -135610059 - RLTR17 LTR ERVK 0 692 1 2 737 2712 196 81 36 chr4 20020061 20020147 -135609973 - RMER17C-int LTR ERVK -3158 80 1 2 737 1869 153 55 33 chr4 20020148 20020351 -135609769 - RMER17C LTR ERVK -3 407 189 2 737 354 121 0 0 chr4 20020351 20020417 -135609703 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 737 342 0 0 0 chr4 20020417 20020454 -135609666 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 737 1869 153 55 33 chr4 20020454 20020647 -135609473 - RMER17C LTR ERVK -222 188 2 2 737 198 167 0 0 chr4 20020737 20020773 -135609347 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 737 22 35 0 0 chr4 20020805 20020834 -135609286 + AT_rich Low_complexity Low_complexity 1 29 0 3 737 325 258 42 31 chr4 20021303 20021399 -135608721 - PB1D10 SINE Alu -18 99 3 3 737 24 53 0 0 chr4 20022368 20022406 -135607714 + AT_rich Low_complexity Low_complexity 1 38 0 3 737 441 318 49 22 chr4 20023982 20024148 -135605972 - ID_B1 SINE B4 -68 224 56 3 737 184 367 74 31 chr4 20024288 20024544 -135605576 + L2a LINE L2 1344 1610 -1809 3 737 808 154 22 0 chr4 20024722 20024858 -135605262 + B1_Mur4 SINE Alu 3 141 -9 3 737 211 28 0 53 chr4 20024859 20024897 -135605223 + (TAA)n Simple_repeat Simple_repeat 3 38 0 3 737 768 276 62 44 chr4 20024905 20025243 -135604877 - RLTR15 LTR ERVK -15 344 1 4 737 970 208 11 0 chr4 20025275 20025458 -135604662 + ORR1C1 LTR MaLR 160 344 -34 4 737 523 280 83 42 chr4 20025486 20025799 -135604321 - L1MA7 LINE L1 -44 6247 5922 4 737 277 321 124 0 chr4 20025800 20025937 -135604183 + MTEa LTR MaLR 6 159 -220 4 737 627 293 118 23 chr4 20026006 20026268 -135603852 + MT2A LTR ERVL 245 531 -2 4 737 812 281 79 27 chr4 20026277 20026680 -135603440 - L1MA7 LINE L1 -372 5919 5496 4 737 545 292 26 0 chr4 20026681 20026873 -135603247 + L1M2 LINE L1 4823 5019 -1124 4 737 583 266 78 43 chr4 20026879 20027276 -135602844 + L1M2 LINE L1 4920 5330 -813 4 737 4206 209 48 29 chr4 20027366 20029156 -135600964 + Lx7 LINE L1 4921 6757 -939 4 737 968 152 134 20 chr4 20029156 20029357 -135600763 + URR1A DNA MER1_type 1 224 -2 4 737 4040 236 58 34 chr4 20029357 20029425 -135600695 + Lx7 LINE L1 6758 6815 -881 4 737 738 272 152 27 chr4 20029425 20029748 -135600372 + MTD LTR MaLR 35 405 -14 4 737 357 355 51 19 chr4 20030128 20030343 -135599777 + L2a LINE L2 3149 3370 -56 3 737 279 337 11 0 chr4 20030426 20030515 -135599605 - MamRep137 DNA TcMar? -354 90 1 5 737 246 277 0 15 chr4 20031755 20031821 -135598299 - ID4_ SINE ID -16 67 3 5 737 432 0 0 0 chr4 20032375 20032423 -135597697 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 737 249 330 11 11 chr4 20034354 20034443 -135595677 - MLT1A1 LTR MaLR -294 114 26 5 737 329 241 100 33 chr4 20034707 20034797 -135595323 - PB1D7 SINE Alu -15 102 7 5 737 286 217 27 44 chr4 20034965 20035148 -135594972 + GA-rich Low_complexity Low_complexity 1 180 0 5 737 450 268 64 16 chr4 20035409 20035534 -135594586 - RLTR25B LTR ERVK 0 1028 898 5 737 453 231 14 91 chr4 20035512 20035684 -135594436 - RLTR25B LTR ERVK -255 848 636 5 737 1580 198 13 26 chr4 20036222 20036533 -135593587 - RLTR25B LTR ERVK -707 321 15 5 737 225 205 98 49 chr4 20036668 20036750 -135593370 - ORR1E LTR MaLR 0 379 294 5 737 277 306 46 46 chr4 20036920 20037071 -135593049 - ORR1E LTR MaLR -205 154 4 5 737 225 317 149 79 chr4 20040817 20041159 -135588961 - Tigger15a DNA TcMar -344 371 6 5 737 196 67 21 62 chr4 20041164 20041212 -135588908 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 5 737 483 204 71 36 chr4 20042108 20042220 -135587900 + PB1D9 SINE Alu 2 117 -3 6 737 422 200 0 0 chr4 20042528 20042598 -135587522 - ID4_ SINE ID -13 70 1 6 737 310 211 137 0 chr4 20042985 20043022 -135587098 + B2_Mm2 SINE B2 88 124 -71 6 737 459 0 0 0 chr4 20043022 20043073 -135587047 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 737 310 211 137 0 chr4 20043073 20043130 -135586990 + B2_Mm2 SINE B2 125 194 -1 6 737 296 19 36 36 chr4 20043200 20043255 -135586865 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 6 737 512 309 38 69 chr4 20043619 20043779 -135586341 - B3A SINE B2 -27 171 17 6 737 311 265 0 0 chr4 20043840 20043908 -135586212 - PB1 SINE Alu -20 107 40 6 737 22 0 0 0 chr4 20044092 20044114 -135586006 + AT_rich Low_complexity Low_complexity 1 22 0 6 737 253 303 2 42 chr4 20044190 20044292 -135585828 - ID4 SINE ID -54 98 1 6 737 227 189 0 19 chr4 20044330 20044384 -135585736 + CT-rich Low_complexity Low_complexity 2 54 0 6 737 291 325 33 11 chr4 20044396 20044500 -135585620 - B1F1 SINE Alu -7 113 8 7 737 264 125 0 0 chr4 20044549 20044597 -135585523 + L1_Mur3 LINE L1 4002 4049 -1831 7 737 499 362 79 74 chr4 20045135 20045245 -135584875 + MLT1J LTR MaLR 71 184 -328 7 737 1392 75 27 0 chr4 20045245 20045431 -135584689 + B2_Mm2 SINE B2 1 191 -4 7 737 499 362 79 74 chr4 20045431 20045752 -135584368 + MLT1J LTR MaLR 185 503 -9 7 737 237 274 16 0 chr4 20048417 20048479 -135581641 + MLT2D LTR ERVL 12 74 -340 7 737 229 345 93 7 chr4 20048544 20048684 -135581436 + L1ME2 LINE L1 5997 6148 -16 7 737 293 0 27 0 chr4 20049535 20049572 -135580548 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7 737 564 348 85 0 chr4 20050307 20050554 -135579566 + MLT2D LTR ERVL 87 354 -60 7 737 3472 60 21 11 chr4 20051093 20051563 -135578557 + MT2C_Mm LTR ERVL 1 475 0 7 737 245 310 77 44 chr4 20052057 20052148 -135577972 + MER20 DNA MER1_type 96 189 -30 7 737 306 0 0 0 chr4 20052782 20052816 -135577304 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 737 249 312 38 0 chr4 20052817 20052897 -135577223 - RSINE1 SINE B4 -9 156 74 8 737 552 81 0 0 chr4 20052973 20053060 -135577060 + (TC)n Simple_repeat Simple_repeat 1 87 0 8 737 390 69 0 0 chr4 20053072 20053130 -135576990 + (GA)n Simple_repeat Simple_repeat 2 59 0 8 737 278 300 38 0 chr4 20053208 20053288 -135576832 + RSINE1 SINE B4 74 156 -9 8 737 333 0 0 0 chr4 20053289 20053326 -135576794 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 737 338 42 21 0 chr4 20053439 20053487 -135576633 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 737 35 41 0 0 chr4 20053946 20053995 -135576125 + AT_rich Low_complexity Low_complexity 1 49 0 8 738 183 42 0 0 chr4 20054158 20054182 -135575938 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 738 271 355 0 24 chr4 20054295 20054422 -135575698 - Lx7 LINE L1 -376 7320 7197 8 738 671 116 9 0 chr4 20054472 20054584 -135575536 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 8 738 854 134 17 11 chr4 20054576 20054750 -135575370 + CT-rich Low_complexity Low_complexity 1 175 0 9 738 31496 69 4 1 chr4 20054773 20059975 -135570145 + L1Md_F2 LINE L1 371 5586 -297 9 738 7878 41 23 0 chr4 20059976 20060948 -135569172 + L1Md_F2 LINE L1 5588 6581 -1 9 738 5999 212 44 31 chr4 20060955 20063006 -135567114 - Lx6 LINE L1 -182 7278 5189 9 738 409 225 11 11 chr4 20063006 20063096 -135567024 - L1_Mur3 LINE L1 -7101 611 522 9 738 408 71 0 0 chr4 20064282 20064338 -135565782 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 738 617 47 12 0 chr4 20064401 20064486 -135565634 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 9 738 459 281 0 0 chr4 20064494 20064590 -135565530 - B1_Mur3 SINE Alu -51 98 3 9 738 296 278 0 129 chr4 20064590 20064626 -135565494 - MT2B LTR ERVL -350 251 137 9 738 198 0 0 0 chr4 20065278 20065300 -135564820 + (ATG)n Simple_repeat Simple_repeat 1 22 0 9 738 192 294 168 32 chr4 20066498 20066593 -135563527 + MIR SINE MIR 61 168 -94 9 738 1359 147 0 55 chr4 20068069 20068307 -135561813 + URR1B DNA MER1_type 1 225 0 1 738 33 66 0 0 chr4 20068974 20069035 -135561085 + AT_rich Low_complexity Low_complexity 1 61 0 1 738 22 56 0 0 chr4 20069261 20069297 -135560823 + AT_rich Low_complexity Low_complexity 1 36 0 1 738 611 244 42 52 chr4 20069371 20069583 -135560537 - B3 SINE B2 -6 210 1 1 738 497 292 32 19 chr4 20069607 20069764 -135560356 - RSINE1 SINE B4 -2 163 5 1 738 1865 58 0 0 chr4 20070927 20071167 -135558953 - L1Md_F2 LINE L1 0 6582 6343 1 738 270 366 32 24 chr4 20071942 20072068 -135558052 - MLT1G1 LTR MaLR -73 506 380 1 738 1197 61 0 0 chr4 20072630 20072777 -135557343 - B1_Mus2 SINE Alu 0 147 1 1 738 180 0 0 0 chr4 20073234 20073254 -135556866 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 738 4614 46 0 2 chr4 20073575 20074140 -135555980 - L1Md_F2 LINE L1 0 6582 6019 1 738 297 239 163 0 chr4 20074468 20074560 -135555560 - ID_B1 SINE B4 -14 210 104 1 738 230 224 0 49 chr4 20075210 20075271 -135554849 + CT-rich Low_complexity Low_complexity 3 60 0 1 738 410 306 7 27 chr4 20075547 20075695 -135554425 + (TATG)n Simple_repeat Simple_repeat 1 145 0 1 738 272 308 22 58 chr4 20076109 20076247 -135553873 + L2c LINE L2 3255 3387 0 1 738 656 272 61 79 chr4 20079439 20079718 -135550402 - B4A SINE B4 -17 275 2 1 738 2713 145 54 150 chr4 20080002 20080426 -135549694 + RLTR18 LTR ERVK 1 371 -245 1 738 979 138 98 0 chr4 20080426 20080600 -135549520 - B2_Mm2 SINE B2 -4 191 1 1 738 2713 145 54 150 chr4 20080600 20080856 -135549264 + RLTR18 LTR ERVK 372 616 0 1 738 578 318 57 37 chr4 20081231 20081476 -135548644 + RMER15 LTR ERVL 312 561 -14 1 738 866 10 10 0 chr4 20081970 20082073 -135548047 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 1 738 369 0 0 0 chr4 20082100 20082141 -135547979 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 738 954 183 114 0 chr4 20083601 20083803 -135546317 - URR1A DNA MER1_type -1 225 1 1 738 875 22 21 28 chr4 20084201 20084343 -135545777 + (TTCTC)n Simple_repeat Simple_repeat 5 145 0 1 738 207 0 0 0 chr4 20084344 20084367 -135545753 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 738 488 238 31 181 chr4 20087801 20087833 -135542287 - B2_Mm2 SINE B2 -1 194 163 1 738 270 0 0 0 chr4 20087833 20087863 -135542257 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 738 706 238 31 181 chr4 20087863 20088056 -135542064 - B3 SINE B2 -31 185 3 1 738 546 327 99 61 chr4 20088351 20088824 -135541296 - MLT1D LTR MaLR 0 505 15 1 738 252 266 93 47 chr4 20089496 20089646 -135540474 - Charlie7 DNA MER1_type -2438 174 18 1 738 1284 171 34 176 chr4 20089687 20090135 -135539985 + ORR1C2 LTR MaLR 1 384 0 1 738 21 0 0 0 chr4 20092066 20092087 -135538033 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 570 249 30 22 chr4 20092363 20092506 -135537614 - B1F SINE Alu 0 149 3 1 738 347 351 22 92 chr4 20092506 20092555 -135537565 - ID SINE ID -143 81 46 1 738 3544 52 0 2 chr4 20092729 20093168 -135536952 - L1Md_F2 LINE L1 -13 6569 6132 1 738 211 114 0 64 chr4 20093905 20093952 -135536168 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 738 419 305 66 61 chr4 20094958 20095014 -135535106 + B4 SINE B4 33 167 -125 1 738 681 252 0 0 chr4 20095014 20095157 -135534963 + B1_Mur2 SINE Alu 6 148 -1 1 738 419 305 66 61 chr4 20095157 20095192 -135534928 + B4 SINE B4 168 257 -35 1 738 22 35 0 0 chr4 20095792 20095821 -135534299 + AT_rich Low_complexity Low_complexity 1 29 0 1 738 39554 4 0 0 chr4 20095821 20102397 -135527723 - L1Md_A LINE L1 0 6582 7 1 738 333 256 19 0 chr4 20102977 20103073 -135527047 - PB1D10 SINE Alu -2 118 19 1 738 1202 218 165 34 chr4 20103817 20104183 -135525937 - MTD LTR MaLR -14 405 1 1 738 183 380 57 16 chr4 20105197 20105320 -135524800 + L2 LINE L2 1911 2038 -1381 1 738 251 250 82 14 chr4 20105491 20105564 -135524556 - ORR1E LTR MaLR 0 359 282 1 738 16090 53 0 0 chr4 20105972 20108119 -135522001 - L1_Mm LINE L1 -1664 4219 2073 1 738 394 238 89 0 chr4 20108255 20108356 -135521764 + B1F SINE Alu 18 127 -22 1 738 351 0 0 0 chr4 20108489 20108528 -135521592 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 738 253 231 62 0 chr4 20108911 20108976 -135521144 + RCHARR1 DNA MER1_type 402 470 -504 1 738 2119 260 81 62 chr4 20109001 20109463 -135520657 + RCHARR1 DNA MER1_type 4 487 -487 1 738 3018 44 0 0 chr4 20109463 20109830 -135520290 + L1Md_T LINE L1 6214 6580 -2 1 738 2119 260 81 62 chr4 20109830 20110048 -135520072 + RCHARR1 DNA MER1_type 488 697 -277 1 738 2008 259 113 24 chr4 20110092 20110243 -135519877 + L1_Mur3 LINE L1 59 225 -7503 1 738 852 72 0 0 chr4 20110243 20110368 -135519752 + (TCCC)n Simple_repeat Simple_repeat 1 125 0 1 738 2008 223 119 20 chr4 20110368 20111470 -135518650 + L1_Mur3 LINE L1 226 1452 -4428 1 738 198 0 0 0 chr4 20111568 20111590 -135518530 + (T)n Simple_repeat Simple_repeat 1 22 0 1 738 414 19 0 0 chr4 20111590 20111643 -135518477 - B1_Mm SINE Alu 0 147 95 1 738 762 11 0 0 chr4 20111646 20111733 -135518387 + (TTC)n Simple_repeat Simple_repeat 2 88 0 1 738 6033 54 13 13 chr4 20111735 20112498 -135517622 - L1Md_F2 LINE L1 -19 6563 5801 1 738 760 21 0 0 chr4 20112498 20112592 -135517528 + L1Md_F2 LINE L1 5715 5808 -774 1 738 540 0 0 0 chr4 20114474 20114534 -135515586 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 1 738 918 131 12 6 chr4 20114534 20114703 -135515417 + (TTTC)n Simple_repeat Simple_repeat 1 170 0 1 738 645 14 0 0 chr4 20115601 20115675 -135514445 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 738 396 0 0 0 chr4 20116161 20116205 -135513915 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 738 6263 113 12 8 chr4 20116973 20117910 -135512210 + Lx2 LINE L1 6056 6996 -1 1 738 226 57 237 79 chr4 20118294 20118370 -135511750 - Lx2B LINE L1 -3 6997 6910 1 738 1887 128 65 6 chr4 20118368 20118691 -135511429 + Lx2 LINE L1 6547 6888 -109 1 738 180 229 0 41 chr4 20118964 20119110 -135511010 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 738 1210 278 54 25 chr4 20119427 20120036 -135510084 + L1MC1 LINE L1 4745 5371 -775 1 738 617 302 97 8 chr4 20120048 20120460 -135509660 + L1MC1 LINE L1 5693 6149 -184 1 738 1134 81 17 0 chr4 20121189 20121361 -135508759 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 1 738 233 337 35 19 chr4 20121363 20121486 -135508634 - B1F SINE Alu -7 142 2 1 738 326 195 0 12 chr4 20122536 20122619 -135507501 + GA-rich Low_complexity Low_complexity 1 82 0 1 738 802 190 97 46 chr4 20122782 20123019 -135507101 - RMER1C Other Other 0 1342 1094 1 738 519 208 23 31 chr4 20123016 20123145 -135506975 + RMER1C Other Other 965 1092 -250 1 738 966 82 0 0 chr4 20123741 20123887 -135506233 + (GA)n Simple_repeat Simple_repeat 1 146 0 1 738 218 296 102 0 chr4 20124474 20124572 -135505548 + MIR SINE MIR 100 207 -55 1 738 741 259 51 51 chr4 20124763 20124948 -135505172 + B3 SINE B2 1 186 -30 1 738 240 35 0 0 chr4 20124948 20124977 -135505143 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 738 741 259 51 51 chr4 20124977 20125007 -135505113 + B3 SINE B2 187 216 0 1 738 7890 42 1 0 chr4 20125551 20127041 -135503079 - L1Md_F2 LINE L1 -2 6580 5089 1 738 1551 63 0 0 chr4 20127091 20127298 -135502822 + L1_Mus3 LINE L1 5591 5797 -841 1 738 346 308 25 8 chr4 20127523 20127641 -135502479 + MLT1A1 LTR MaLR 35 154 -254 1 738 234 295 112 35 chr4 20127668 20127784 -135502336 + MLT1A1 LTR MaLR 247 371 -19 1 738 253 141 14 14 chr4 20128137 20128209 -135501911 + A-rich Low_complexity Low_complexity 4 75 0 1 738 3406 127 50 7 chr4 20128209 20128795 -135501325 + Lx LINE L1 5783 6393 -261 1 738 221 59 18 73 chr4 20128796 20128851 -135501269 + (TGGGGG)n Simple_repeat Simple_repeat 6 57 0 1 738 1161 178 12 0 chr4 20128856 20129097 -135501023 + Lx2 LINE L1 6734 6977 -20 1 738 2673 276 63 17 chr4 20129118 20129986 -135500134 + RCHARR1 DNA MER1_type 66 973 -1 1 738 340 347 97 14 chr4 20130143 20130304 -135499816 + Tigger9b DNA MER2_type 234 412 -212 1 738 333 118 0 0 chr4 20130304 20130355 -135499765 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 738 340 347 97 14 chr4 20130355 20130409 -135499711 + Tigger9b DNA MER2_type 413 466 -158 1 738 248 382 71 27 chr4 20130472 20130655 -135499465 + RMER4A LTR ERVK 8 198 -268 1 738 2095 189 0 41 chr4 20131606 20131998 -135498122 + ORR1C1 LTR MaLR 3 378 0 1 738 1606 294 40 18 chr4 20132031 20132484 -135497636 + MLT1C LTR MaLR 1 463 -4 1 738 24 0 0 0 chr4 20132496 20132520 -135497600 + AT_rich Low_complexity Low_complexity 1 24 0 1 738 2688 76 5 0 chr4 20132528 20132897 -135497223 - L1_Mus2 LINE L1 -144 5739 5369 1 738 6167 67 21 1 chr4 20132891 20133730 -135496390 + L1_Mus2 LINE L1 5711 6566 0 1 738 1341 181 60 4 chr4 20133903 20134152 -135495968 - MTC LTR MaLR -10 411 149 1 738 640 241 60 22 chr4 20134155 20134423 -135495697 + Lx9 LINE L1 5062 5339 -508 1 738 35489 26 0 7 chr4 20134423 20139554 -135490566 + L1Md_A LINE L1 498 5586 -297 1 738 8328 35 1 0 chr4 20139554 20140546 -135489574 + L1Md_A LINE L1 5587 6579 -3 1 738 1697 253 60 24 chr4 20140568 20141165 -135488955 + Lx9 LINE L1 5327 5973 -1500 1 738 198 103 0 0 chr4 20141165 20141194 -135488926 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 738 2589 298 103 23 chr4 20141194 20142600 -135487520 + Lx9 LINE L1 5974 7617 -27 1 738 527 312 26 53 chr4 20142645 20142872 -135487248 + ID_B1 SINE B4 4 224 0 1 738 2096 199 35 12 chr4 20143706 20144108 -135486012 - MTC LTR MaLR -10 411 1 1 738 707 250 81 5 chr4 20144376 20144573 -135485547 - B3 SINE B2 -4 212 1 1 738 238 310 127 33 chr4 20145364 20145514 -135484606 - MIRb SINE MIR -57 211 48 1 738 865 291 56 98 chr4 20145693 20145998 -135484122 - B4A SINE B4 0 292 1 1 738 258 237 17 0 chr4 20146092 20146151 -135483969 + RLTR19C LTR ERVK 34 93 -413 1 738 184 158 0 137 chr4 20147654 20147815 -135482305 + (CACCAT)n Simple_repeat Simple_repeat 3 141 0 1 738 732 200 5 0 chr4 20149247 20149447 -135480673 + CT-rich Low_complexity Low_complexity 1 201 0 1 738 5227 126 11 17 chr4 20151614 20152431 -135477689 + Lx2 LINE L1 6185 6996 -1 1 738 25 0 0 0 chr4 20152435 20152460 -135477660 + AT_rich Low_complexity Low_complexity 1 25 0 1 738 25 31 0 0 chr4 20152649 20152681 -135477439 + AT_rich Low_complexity Low_complexity 1 32 0 1 738 351 0 0 0 chr4 20152824 20152863 -135477257 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 738 492 18 0 0 chr4 20154654 20154711 -135475409 + (CAAAA)n Simple_repeat Simple_repeat 5 61 0 2 738 300 109 0 21 chr4 20155951 20155998 -135474122 + U2 snRNA snRNA 1 46 -142 2 738 528 198 0 0 chr4 20156240 20156331 -135473789 - B1_Mus2 SINE Alu -7 140 50 2 738 265 242 29 29 chr4 20156282 20156350 -135473770 - RLTR25B LTR ERVK -530 498 431 2 738 6824 94 5 1 chr4 20156392 20157667 -135472453 - L1_Mus2 LINE L1 0 6566 5288 2 738 17851 67 8 30 chr4 20157661 20159134 -135470986 - L1Md_F2 LINE L1 -2 6580 5164 2 738 5034 89 0 0 chr4 20159134 20159805 -135470315 - L1_Mus1 LINE L1 0 6567 5897 2 738 17851 98 21 84 chr4 20159805 20162289 -135467831 - L1Md_F2 LINE L1 -720 5163 2830 2 738 863 266 73 75 chr4 20162372 20162867 -135467253 - L1_Rod LINE L1 -314 5533 5040 2 738 309 292 81 76 chr4 20162875 20163086 -135467034 + CYRA11_Mm Unknown Y-chromosome 165 376 -241 2 738 1007 193 34 0 chr4 20162920 20163096 -135467024 - URR1B DNA MER1_type -43 182 1 2 738 1550 260 59 41 chr4 20163097 20163830 -135466290 - L1_Rod LINE L1 -838 5009 4264 2 738 385 331 75 46 chr4 20163858 20164104 -135466016 + Lx9 LINE L1 7108 7461 -183 2 738 321 26 0 0 chr4 20164104 20164142 -135465978 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 738 268 331 77 49 chr4 20164142 20164270 -135465850 + Lx9 LINE L1 7336 7466 -7 2 738 655 262 102 20 chr4 20164436 20164681 -135465439 + Lx5 LINE L1 5957 6221 -829 2 738 277 154 58 0 chr4 20164682 20164734 -135465386 + Lx4B LINE L1 6768 6822 -236 2 738 2117 121 10 0 chr4 20164738 20165052 -135465068 - ORR1A3 LTR MaLR -9 317 1 2 738 760 214 38 109 chr4 20165057 20165324 -135464796 + Lx5 LINE L1 6801 7048 -2 2 738 484 301 16 0 chr4 20165340 20165463 -135464657 - ID_B1 SINE B4 -8 216 92 2 738 423 0 0 0 chr4 20167804 20167851 -135462269 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 738 284 176 0 14 chr4 20168015 20168084 -135462036 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 738 255 324 14 14 chr4 20168867 20168936 -135461184 + LTR16A LTR ERVL 6 74 -377 2 738 359 323 90 0 chr4 20169017 20169172 -135460948 + LTR16A LTR ERVL 283 451 0 2 738 278 332 118 35 chr4 20169639 20169842 -135460278 - MER2 DNA MER2_type -6 339 120 2 738 438 69 0 0 chr4 20169965 20170023 -135460097 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 738 1282 13 0 19 chr4 20170993 20171152 -135458968 - L1Md_A LINE L1 -1 6581 6426 2 738 284 299 39 67 chr4 20172148 20172252 -135457868 + RMER30 DNA MER1_type 1 101 -101 2 738 354 317 21 14 chr4 20172203 20172344 -135457776 - Charlie12 DNA MER1_type -2712 161 20 2 738 1036 223 9 9 chr4 20173457 20173670 -135456450 + B3 SINE B2 2 214 -2 2 738 33 25 0 0 chr4 20174253 20174293 -135455827 + AT_rich Low_complexity Low_complexity 1 40 0 2 738 533 274 0 0 chr4 20174375 20174488 -135455632 - B3A SINE B2 -57 141 29 2 738 1148 69 0 20 chr4 20174530 20174668 -135455452 + B1_Mm SINE Alu 2 139 -8 2 738 255 31 0 0 chr4 20174668 20174700 -135455420 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 738 352 302 10 50 chr4 20175869 20175970 -135454150 + B4A SINE B4 5 101 -191 2 738 3005 106 7 0 chr4 20176072 20176514 -135453606 - L1_Mus3 LINE L1 -129 6509 6065 2 738 1010 139 0 0 chr4 20176515 20176688 -135453432 + L1_Mus2 LINE L1 5123 5295 -588 2 738 4661 50 31 2 chr4 20176688 20177272 -135452848 + L1Md_F2 LINE L1 5982 6582 0 2 738 23 0 0 0 chr4 20177370 20177393 -135452727 + AT_rich Low_complexity Low_complexity 1 23 0 2 738 4204 81 5 2 chr4 20177393 20178170 -135451950 + L1_Mus2 LINE L1 5287 6064 -502 2 738 312 224 209 7 chr4 20178168 20178321 -135451799 + L1MD LINE L1 5153 5336 -810 2 738 278 374 62 51 chr4 20178322 20178695 -135451425 - ORR1E LTR MaLR -1 373 1 2 738 779 298 32 97 chr4 20178704 20178838 -135451282 + L1MD LINE L1 5342 5467 -892 2 738 234 0 0 0 chr4 20178838 20178864 -135451256 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 738 779 298 32 97 chr4 20178864 20178896 -135451224 + L1MD LINE L1 5468 5482 -877 2 738 297 0 0 0 chr4 20178896 20178929 -135451191 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 738 779 298 32 97 chr4 20178929 20179255 -135450865 + L1MD LINE L1 5483 5803 -556 2 738 198 191 0 0 chr4 20179517 20179559 -135450561 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 2 738 185 308 45 30 chr4 20179728 20179795 -135450325 - MIRm SINE MIR -127 149 82 2 738 201 357 63 42 chr4 20180336 20180526 -135449594 + MIRb SINE MIR 32 225 -43 2 738 1223 186 36 80 chr4 20180746 20180870 -135449250 + RMER17C LTR ERVK 65 179 -231 2 738 1172 91 0 11 chr4 20180870 20181047 -135449073 + (TCTCC)n Simple_repeat Simple_repeat 3 177 0 2 738 1223 186 36 80 chr4 20181047 20181284 -135448836 + RMER17C LTR ERVK 180 409 -1 2 738 1809 174 120 17 chr4 20181284 20181700 -135448420 + Lx4B LINE L1 6599 7057 -1 2 738 640 289 100 86 chr4 20181747 20182027 -135448093 + ORR1E LTR MaLR 72 355 -4 2 738 477 272 114 30 chr4 20182068 20182330 -135447790 + L1MEe LINE L1 506 789 -4065 2 738 675 285 25 5 chr4 20183185 20183390 -135446730 - B3A SINE B2 -11 205 1 2 738 2919 57 3 0 chr4 20183414 20183782 -135446338 - L1Md_F2 LINE L1 -12 6570 6202 2 738 768 58 0 0 chr4 20183782 20183877 -135446243 + L1Md_F2 LINE L1 5825 5919 -663 2 738 677 188 8 8 chr4 20184279 20184413 -135445707 + Lx7 LINE L1 7191 7324 -372 2 738 279 189 81 0 chr4 20184423 20184497 -135445623 + Lx7 LINE L1 7617 7696 0 2 739 4113 71 2 7 chr4 20185992 20186530 -135443590 + L1_Mus1 LINE L1 6033 6567 0 2 739 283 203 43 0 chr4 20186562 20186631 -135443489 + MADE2 DNA Mariner 9 80 0 2 739 27 0 0 0 chr4 20186709 20186736 -135443384 + AT_rich Low_complexity Low_complexity 1 27 0 2 739 328 242 13 0 chr4 20186901 20187054 -135443066 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 739 191 189 0 19 chr4 20187066 20187120 -135443000 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 739 387 0 0 0 chr4 20187423 20187466 -135442654 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 739 925 108 0 0 chr4 20187476 20187605 -135442515 - B2_Mm2 SINE B2 -65 130 2 2 739 497 326 32 11 chr4 20189341 20189527 -135440593 - MTE2b LTR MaLR -188 191 2 2 739 1406 86 0 5 chr4 20189615 20189813 -135440307 + Lx LINE L1 6457 6653 -1 2 739 5231 31 0 0 chr4 20190263 20190871 -135439249 - L1Md_T LINE L1 -2 6580 5973 2 739 1390 40 0 0 chr4 20190871 20191046 -135439074 + L1Md_T LINE L1 5829 6003 -579 2 739 225 239 42 0 chr4 20191669 20191740 -135438380 - L1M4b LINE L1 -5795 1539 1466 2 739 2838 196 64 161 chr4 20192212 20192800 -135437320 + Lx2B LINE L1 5915 6361 -639 2 739 3457 44 16 0 chr4 20192800 20193228 -135436892 + L1Md_F3 LINE L1 6150 6584 0 2 739 2838 196 64 161 chr4 20193228 20193796 -135436324 + Lx2B LINE L1 6362 6959 -41 2 739 265 24 23 23 chr4 20193807 20193850 -135436270 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 2 739 978 110 0 0 chr4 20194005 20194151 -135435969 + (GA)n Simple_repeat Simple_repeat 1 146 0 2 739 27 0 0 0 chr4 20195030 20195057 -135435063 + AT_rich Low_complexity Low_complexity 1 27 0 2 739 761 67 25 0 chr4 20195200 20195319 -135434801 - L1Md_F2 LINE L1 -3 6579 6458 2 739 401 248 118 44 chr4 20195730 20195958 -135434162 - Charlie5 DNA MER1_type -1 2623 2379 2 739 268 241 0 0 chr4 20196091 20196145 -135433975 + ID4_ SINE ID 23 76 -7 2 739 324 133 0 0 chr4 20196154 20196214 -135433906 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 739 457 302 171 19 chr4 20198386 20198643 -135431477 - LTR82B Low_complexity ERVL -79 751 456 2 739 1326 61 7 7 chr4 20199174 20199447 -135430673 + (TTTC)n Simple_repeat Simple_repeat 1 272 0 2 739 586 219 18 0 chr4 20199451 20199565 -135430555 - B1_Mur1 SINE Alu 0 149 34 2 739 388 308 68 19 chr4 20200891 20201096 -135429024 + B3 SINE B2 2 216 0 2 739 27 62 0 0 chr4 20201307 20201355 -135428765 + AT_rich Low_complexity Low_complexity 1 48 0 2 739 573 76 0 0 chr4 20201438 20201517 -135428603 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 739 436 296 29 41 chr4 20201536 20201779 -135428341 - Lx9 LINE L1 -180 7464 7225 2 739 226 259 12 0 chr4 20201861 20201942 -135428178 - L1MC4 LINE L1 -382 7660 7579 2 739 354 313 78 52 chr4 20203452 20203585 -135426535 + L1MB8 LINE L1 5851 5993 -185 2 739 868 285 100 17 chr4 20203585 20203935 -135426185 + MTEa LTR MaLR 1 379 0 2 739 354 313 78 52 chr4 20203935 20203993 -135426127 + L1MB8 LINE L1 5994 6047 -131 2 739 306 0 0 0 chr4 20204306 20204340 -135425780 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 739 403 282 17 34 chr4 20204739 20204915 -135425205 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 2 739 683 282 143 0 chr4 20204920 20205172 -135424948 - B4A SINE B4 -4 288 1 2 739 4719 59 35 0 chr4 20205544 20206150 -135423970 + L1Md_T LINE L1 5956 6582 0 2 739 270 0 0 0 chr4 20206964 20206994 -135423126 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 739 357 24 0 0 chr4 20207546 20207588 -135422532 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 739 722 345 126 50 chr4 20207599 20208004 -135422116 + Tigger7 DNA MER2_type 2 440 -2051 2 739 435 38 0 0 chr4 20208004 20208057 -135422063 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 2 739 722 345 126 50 chr4 20208057 20208087 -135422033 + Tigger7 DNA MER2_type 441 470 -2021 2 739 277 260 144 10 chr4 20208086 20208183 -135421937 + Tigger7 DNA MER2_type 2323 2432 -59 2 739 626 150 8 0 chr4 20208820 20208940 -135421180 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 2 739 780 189 0 65 chr4 20208947 20209100 -135421020 - B1_Mur3 SINE Alu -2 147 5 2 739 374 350 27 40 chr4 20208967 20209116 -135421004 - B4 SINE B4 -69 223 77 2 739 552 234 36 7 chr4 20209239 20209377 -135420743 + B1_Mur1 SINE Alu 1 142 -7 2 739 604 316 100 42 chr4 20210602 20210731 -135419389 - MER2 DNA MER2_type -16 329 197 2 739 495 0 0 0 chr4 20210731 20210786 -135419334 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2 739 1071 96 0 0 chr4 20210786 20210921 -135419199 - B1_Mus1 SINE Alu -13 135 1 2 739 604 316 100 42 chr4 20210921 20211100 -135419020 - MER2 DNA MER2_type -149 196 3 2 739 1287 44 0 32 chr4 20211330 20211516 -135418604 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 739 542 315 33 47 chr4 20211663 20211963 -135418157 + MLT1C LTR MaLR 169 464 -3 2 739 3088 192 11 12 chr4 20212852 20213421 -135416699 + RLTR20D LTR ERVK 1 568 0 2 739 743 217 83 87 chr4 20213730 20214007 -135416113 + RLTR25B LTR ERVK 753 1028 0 2 739 610 216 128 12 chr4 20214007 20214168 -135415952 + MTD LTR MaLR 240 419 0 2 739 28 0 0 0 chr4 20215666 20215694 -135414426 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 322 351 168 14 chr4 20215851 20216065 -135414055 + MER34A1 LTR ERV1 1 247 -340 3 739 38925 12 0 6 chr4 20216316 20222727 -135407393 - L1Md_A LINE L1 0 6582 215 3 739 270 309 57 61 chr4 20222755 20222824 -135407296 + RLTR16 LTR ERVK 1 68 -437 3 739 3161 42 21 0 chr4 20222824 20223201 -135406919 + IAPEY_LTR LTR ERVK 1 385 0 3 739 285 342 40 88 chr4 20223201 20223554 -135406566 + RLTR17 LTR ERVK 120 455 -237 3 739 21 0 0 0 chr4 20224429 20224450 -135405670 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 311 333 21 0 chr4 20225026 20225119 -135405001 + B1F1 SINE Alu 4 98 -51 3 739 498 33 0 0 chr4 20225145 20225205 -135404915 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 739 1022 223 19 5 chr4 20225386 20225598 -135404522 + B3 SINE B2 2 216 0 3 739 356 328 129 22 chr4 20225982 20226393 -135403727 - L1MCa LINE L1 -6035 473 19 3 739 246 62 0 0 chr4 20226636 20226668 -135403452 + (A)n Simple_repeat Simple_repeat 1 32 0 3 739 3244 33 13 0 chr4 20226786 20227177 -135402943 - L1Md_A LINE L1 -5 6577 6182 3 739 2563 37 0 0 chr4 20227177 20227498 -135402622 + L1Md_A LINE L1 5848 6168 -414 3 739 231 163 0 0 chr4 20228188 20228231 -135401889 + L1VL2 LINE L1 526 568 -5767 3 739 530 211 29 16 chr4 20228394 20228606 -135401514 + MusHAL1 LINE L1 435 649 -5686 3 739 1237 43 19 0 chr4 20228606 20228767 -135401353 + L1Md_F2 LINE L1 6416 6579 -3 3 739 410 105 92 0 chr4 20228769 20228845 -135401275 - L1_Mur3 LINE L1 -2357 3523 3441 3 739 219 69 0 0 chr4 20228846 20228875 -135401245 + (A)n Simple_repeat Simple_repeat 1 29 0 3 739 19288 134 250 5 chr4 20228875 20229221 -135400899 + Lx2B LINE L1 952 1382 -4504 3 739 4824 55 2 2 chr4 20229221 20229808 -135400312 + LTRIS_Mus LTR ERV1 1 587 0 3 739 19288 178 65 18 chr4 20229808 20230038 -135400082 + Lx2B LINE L1 1383 1608 -4278 3 739 1149 75 0 0 chr4 20230038 20230185 -135399935 + B1_Mm SINE Alu 1 147 0 3 739 19288 168 54 18 chr4 20230185 20234868 -135395252 + Lx2B LINE L1 1609 6486 -514 3 739 551 160 23 39 chr4 20234885 20235015 -135395105 + Lx2B LINE L1 6868 6995 -5 3 739 192 40 0 0 chr4 20235028 20235053 -135395067 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 739 528 179 0 19 chr4 20235053 20235212 -135394908 + (TA)n Simple_repeat Simple_repeat 1 156 0 3 739 441 0 0 0 chr4 20235257 20235306 -135394814 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 3 739 420 238 147 12 chr4 20235559 20235729 -135394391 - L1MA5 LINE L1 -402 5898 5706 3 739 2134 148 0 0 chr4 20235782 20236107 -135394013 - ORR1A2 LTR MaLR -2 325 1 3 739 9943 138 50 13 chr4 20236107 20237836 -135392284 - ORR1A2-int LTR MaLR 0 1792 1 3 739 445 184 0 44 chr4 20239000 20239091 -135391029 + RMER19C LTR ERVK 525 611 0 3 739 207 0 0 0 chr4 20239274 20239297 -135390823 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 739 559 298 6 30 chr4 20241052 20241218 -135388902 - RSINE1 SINE B4 -2 163 2 3 739 884 267 19 9 chr4 20242299 20242511 -135387609 - B3 SINE B2 0 216 3 3 739 1460 127 9 0 chr4 20242551 20242780 -135387340 + L1_Mus3 LINE L1 6401 6631 -7 3 739 281 253 0 21 chr4 20244474 20244567 -135385553 - Lx8 LINE L1 -403 7070 6980 3 739 276 255 162 10 chr4 20244607 20244706 -135385414 - B1F SINE Alu -26 123 10 3 739 317 308 0 0 chr4 20245918 20245996 -135384124 - ID4_ SINE ID -2 81 4 3 739 298 349 0 9 chr4 20246022 20246132 -135383988 - PB1D10 SINE Alu -8 109 1 3 739 245 289 27 13 chr4 20246225 20246337 -135383783 - MIR SINE MIR -23 245 126 3 739 331 238 12 12 chr4 20246337 20246418 -135383702 - ORR1C2 LTR MaLR 0 384 304 3 739 351 0 0 0 chr4 20246468 20246507 -135383613 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 739 569 104 44 7 chr4 20246518 20246654 -135383466 + GA-rich Low_complexity Low_complexity 1 141 0 3 739 596 205 30 61 chr4 20246657 20246928 -135383192 - ORR1C2 LTR MaLR -183 184 3 3 739 291 346 0 97 chr4 20247111 20247255 -135382865 + RMER21A LTR ERV1 706 835 -112 3 739 280 272 94 28 chr4 20247246 20247352 -135382768 + MLT1L LTR MaLR 426 538 -72 3 739 1381 264 63 29 chr4 20248070 20248561 -135381559 + Lx8 LINE L1 6815 7322 -151 3 739 321 281 80 22 chr4 20248582 20248753 -135381367 + B3A SINE B2 6 195 0 3 739 560 310 45 6 chr4 20248924 20249080 -135381040 + RSINE1 SINE B4 3 164 -1 3 739 22 0 0 0 chr4 20249833 20249855 -135380265 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 211 379 21 10 chr4 20250151 20250247 -135379873 + B1F SINE Alu 52 148 -1 3 739 2282 109 55 18 chr4 20250411 20250793 -135379327 + Lx3_Mus LINE L1 6614 7009 0 3 739 547 243 8 67 chr4 20251386 20251505 -135378615 - RSINE1 SINE B4 -48 117 6 3 739 210 143 0 0 chr4 20251513 20251548 -135378572 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 3 739 2238 310 63 8 chr4 20252000 20252823 -135377297 - Lx8 LINE L1 -160 7313 6446 3 739 712 310 0 12 chr4 20253313 20253483 -135376637 + B3A SINE B2 1 168 -30 3 739 183 42 0 0 chr4 20253484 20253508 -135376612 + (C)n Simple_repeat Simple_repeat 1 24 0 3 739 2388 207 127 16 chr4 20253521 20254071 -135376049 + RMER19C LTR ERVK 1 611 0 3 739 24 0 0 0 chr4 20254079 20254103 -135376017 + AT_rich Low_complexity Low_complexity 1 24 0 3 739 735 243 38 108 chr4 20254866 20255180 -135374940 - B4A SINE B4 0 292 1 3 739 204 40 0 0 chr4 20255188 20255213 -135374907 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 739 1494 177 59 74 chr4 20257686 20257874 -135372246 + ORR1C2 LTR MaLR 1 190 -194 3 739 531 0 0 0 chr4 20257874 20257933 -135372187 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 739 1494 177 59 74 chr4 20257933 20258134 -135371986 + ORR1C2 LTR MaLR 191 384 0 3 739 363 263 63 35 chr4 20259090 20259232 -135370888 + L3 LINE CR1 3476 3621 -868 3 739 2184 161 47 17 chr4 20259443 20259848 -135370272 + Lx4A LINE L1 6642 7058 0 3 739 233 282 0 60 chr4 20260109 20260192 -135369928 + RMER1C Other Other 1246 1323 -19 3 739 543 168 0 0 chr4 20260205 20260348 -135369772 + GA-rich Low_complexity Low_complexity 2 144 0 3 739 335 361 118 60 chr4 20261118 20261569 -135368551 - L2a LINE L2 -1 3425 2949 3 739 397 34 34 0 chr4 20263007 20263066 -135367054 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 739 810 297 134 51 chr4 20263770 20264366 -135365754 + RMER13A LTR ERVK 1 680 -228 3 739 250 317 103 28 chr4 20265148 20265255 -135364865 + Charlie15a DNA MER1_type 93 207 -17 3 739 875 274 78 100 chr4 20265498 20266357 -135363763 - Lx9 LINE L1 -1075 6569 5634 3 739 1116 297 25 78 chr4 20266357 20266963 -135363157 + Lx9 LINE L1 6606 7179 -465 3 739 1165 305 60 98 chr4 20266996 20267099 -135363021 - RLTR18 LTR ERVK -6 610 511 3 739 722 229 75 14 chr4 20267099 20267312 -135362808 - URR1A DNA MER1_type 0 226 1 3 739 1165 305 60 98 chr4 20267312 20267840 -135362280 - RLTR18 LTR ERVK -106 510 3 3 739 417 301 123 5 chr4 20267840 20268060 -135362060 + Lx9 LINE L1 7196 7441 -203 3 739 492 143 0 0 chr4 20268189 20268273 -135361847 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 739 2919 42 16 10 chr4 20268673 20269060 -135361060 + MTA_Mm LTR MaLR 8 396 0 3 739 446 348 82 23 chr4 20269291 20269547 -135360573 - MLT1H LTR MaLR -256 293 23 3 739 219 133 0 0 chr4 20271178 20271223 -135358897 + (T)n Simple_repeat Simple_repeat 1 45 0 3 739 320 320 10 0 chr4 20272596 20272693 -135357427 + CT-rich Low_complexity Low_complexity 3 100 0 3 739 228 329 25 12 chr4 20273031 20273111 -135357009 - MIRb SINE MIR -76 192 112 3 739 253 295 113 21 chr4 20273208 20273350 -135356770 + L3 LINE CR1 4324 4478 -11 3 739 285 309 119 54 chr4 20273388 20273573 -135356547 + MamGypLTR1d LTR Gypsy 32 228 -585 3 739 489 354 101 31 chr4 20274403 20274820 -135355300 - LTR16B1 LTR ERVL -32 448 3 3 739 403 271 107 0 chr4 20275848 20275988 -135354132 - MLT1B LTR MaLR -164 226 72 3 739 414 0 0 0 chr4 20276094 20276140 -135353980 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 739 237 33 0 0 chr4 20276421 20276451 -135353669 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 739 299 23 47 0 chr4 20276453 20276496 -135353624 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 3 739 249 295 33 0 chr4 20276499 20276560 -135353560 - LTR87 LTR ERVL? -260 364 302 3 739 505 277 85 0 chr4 20276872 20277098 -135353022 + Lx5 LINE L1 6455 6878 -818 3 739 936 297 72 3 chr4 20277134 20277479 -135352641 + Lx6 LINE L1 7061 7429 -31 3 739 393 75 0 0 chr4 20277479 20277532 -135352588 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 739 409 308 149 14 chr4 20277825 20277973 -135352147 + B4A SINE B4 5 172 -120 3 739 2499 71 24 3 chr4 20278164 20278502 -135351618 - L1Md_F2 LINE L1 -3 6579 6235 3 739 613 338 36 73 chr4 20278622 20278979 -135351141 - MER44B DNA MER2_type -197 353 10 3 739 1507 206 82 11 chr4 20279600 20279977 -135350143 + RMER1B Other Other 659 1062 -4 3 739 656 336 128 54 chr4 20280576 20280985 -135349135 - MLT1E2 LTR MaLR -11 616 178 3 739 1137 135 84 24 chr4 20280985 20281198 -135348922 + URR1A DNA MER1_type 1 226 0 3 739 656 336 128 54 chr4 20281198 20281344 -135348776 - MLT1E2 LTR MaLR -450 177 20 3 739 35946 43 1 3 chr4 20281718 20287983 -135342137 - L1Md_T LINE L1 0 6585 242 3 739 1567 219 34 59 chr4 20289217 20289605 -135340515 - ORR1C1 LTR MaLR 0 378 1 3 739 239 242 263 8 chr4 20290287 20290420 -135339700 + MIRc SINE MIR 42 208 -60 3 739 209 309 0 0 chr4 20290732 20290787 -135339333 - MIRm SINE MIR -172 104 50 3 739 443 343 107 35 chr4 20290890 20291349 -135338771 - MLT1D LTR MaLR -1 504 13 3 739 263 115 33 0 chr4 20292334 20292395 -135337725 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 739 522 57 0 0 chr4 20292469 20292539 -135337581 + (TATG)n Simple_repeat Simple_repeat 2 71 0 3 739 367 305 70 19 chr4 20293632 20293789 -135336331 - MIRc SINE MIR 0 268 104 3 739 434 104 0 72 chr4 20295357 20295440 -135334680 - L1_Mur2 LINE L1 -709 5168 5092 4 739 777 118 0 0 chr4 20295440 20295559 -135334561 + (TC)n Simple_repeat Simple_repeat 2 120 0 4 739 969 132 7 0 chr4 20295576 20295720 -135334400 - B1_Mus2 SINE Alu -1 146 2 4 739 3390 159 1 17 chr4 20295722 20296369 -135333751 - L1_Mm LINE L1 -769 5114 4478 4 739 2146 186 21 0 chr4 20296369 20296798 -135333322 + L1_Mm LINE L1 5189 5626 -257 4 739 438 180 0 0 chr4 20296798 20296887 -135333233 + Lx LINE L1 6566 6654 0 4 739 713 323 17 24 chr4 20299717 20300009 -135330111 + B4A SINE B4 2 291 -1 4 739 514 241 67 8 chr4 20300107 20300241 -135329879 - MER5A1 DNA MER1_type 0 166 25 4 739 601 282 81 4 chr4 20300245 20300512 -135329608 + L1MA5 LINE L1 5639 5927 -373 4 739 413 366 66 40 chr4 20300911 20301184 -135328936 - B4A SINE B4 -8 284 5 4 739 468 0 0 0 chr4 20301519 20301571 -135328549 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 739 198 0 0 0 chr4 20301571 20301592 -135328528 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 739 187 230 11 11 chr4 20301595 20301683 -135328437 + (CAA)n Simple_repeat Simple_repeat 3 90 0 4 739 12784 97 17 37 chr4 20303378 20306427 -135323693 + L1VL2 LINE L1 9 2983 -632 4 739 2063 90 0 7 chr4 20307016 20307296 -135322824 - ORR1A2 LTR MaLR -49 278 1 4 739 347 318 62 45 chr4 20307475 20307699 -135322421 + MIR SINE MIR 2 229 -33 4 739 408 55 0 0 chr4 20307841 20307896 -135322224 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 739 13376 140 17 6 chr4 20307899 20311126 -135318994 - L1_Mus4 LINE L1 -12 6624 3359 4 739 374 0 22 0 chr4 20312183 20312229 -135317891 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 739 228 319 111 70 chr4 20313729 20313969 -135316151 - MIR SINE MIR -21 241 5 4 739 477 0 0 0 chr4 20314791 20314844 -135315276 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 739 252 0 0 0 chr4 20314844 20314871 -135315249 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 740 213 39 0 0 chr4 20319617 20319643 -135310477 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 740 784 306 111 17 chr4 20319743 20320148 -135309972 - Lx8 LINE L1 -5 7468 7026 4 740 1370 288 76 16 chr4 20320169 20320670 -135309450 - Lx8 LINE L1 -530 6943 6413 4 740 1461 34 0 0 chr4 20320682 20320861 -135309259 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 740 186 43 0 0 chr4 20320867 20320890 -135309230 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 740 378 0 0 0 chr4 20321443 20321485 -135308635 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 740 280 208 26 150 chr4 20321706 20321819 -135308301 + MLT1A0 LTR MaLR 10 108 -266 4 740 410 284 0 0 chr4 20321839 20321948 -135308172 + MLT1A0 LTR MaLR 256 364 -1 4 740 213 94 0 0 chr4 20322202 20322234 -135307886 + (A)n Simple_repeat Simple_repeat 1 32 0 4 740 642 242 44 17 chr4 20322238 20322419 -135307701 + Lx9 LINE L1 7146 7331 -313 4 740 960 177 31 36 chr4 20322468 20322691 -135307429 + URR1A DNA MER1_type 5 226 0 4 740 249 350 108 53 chr4 20323965 20324345 -135305775 + L2 LINE L2 2232 2632 -787 4 740 232 278 122 10 chr4 20325531 20325579 -135304541 - B3A SINE B2 0 198 151 4 740 351 0 0 0 chr4 20325579 20325618 -135304502 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 740 232 278 122 10 chr4 20325618 20325667 -135304453 - B3A SINE B2 -48 150 92 4 740 32 98 0 0 chr4 20325766 20325868 -135304252 + AT_rich Low_complexity Low_complexity 1 102 0 4 740 1392 76 30 5 chr4 20326000 20326198 -135303922 + L1_Mus1 LINE L1 6363 6565 -2 4 740 1729 222 15 64 chr4 20326356 20326760 -135303360 - ORR1C2 LTR MaLR 0 384 1 4 740 687 231 82 45 chr4 20327178 20327423 -135302697 - Lx2B LINE L1 -10 6990 6737 4 740 452 327 95 42 chr4 20327502 20327764 -135302356 - B4A SINE B4 -12 280 5 4 740 302 156 0 15 chr4 20327973 20328038 -135302082 + CT-rich Low_complexity Low_complexity 1 64 0 4 740 315 0 0 0 chr4 20328040 20328075 -135302045 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 740 1500 190 53 37 chr4 20328962 20329339 -135300781 - Lx2B LINE L1 -2 6998 6616 4 740 1376 266 40 8 chr4 20329625 20329977 -135300143 + ORR1D2 LTR MaLR 8 370 0 4 740 612 91 49 29 chr4 20330859 20330961 -135299159 + MT-int LTR MaLR 3 106 -992 4 740 1060 59 0 7 chr4 20330960 20331097 -135299023 + MTA_Mm LTR MaLR 261 396 0 4 740 286 133 44 0 chr4 20331097 20331142 -135298978 + MTA_Mm-int LTR MaLR 11 57 -1041 4 740 219 312 8 99 chr4 20331302 20331423 -135298697 + PB1D9 SINE Alu 5 114 -6 4 740 256 330 43 9 chr4 20332104 20332220 -135297900 - ORR1E LTR MaLR -10 369 250 4 740 366 245 29 39 chr4 20332323 20332425 -135297695 - ORR1E LTR MaLR -251 108 8 4 740 243 79 0 0 chr4 20332642 20332680 -135297440 + (T)n Simple_repeat Simple_repeat 1 38 0 4 740 257 226 16 16 chr4 20332973 20333036 -135297084 + RMER15 LTR ERVL 422 484 -91 4 740 233 294 84 42 chr4 20334024 20334095 -135296025 - MER5A1 DNA MER1_type -89 77 4 4 740 503 241 20 7 chr4 20334758 20334904 -135295216 + L1MA5 LINE L1 6145 6292 -8 4 740 1095 88 0 0 chr4 20334978 20335125 -135294995 + B1_Mm SINE Alu 1 147 0 4 740 188 35 35 0 chr4 20335127 20335156 -135294964 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 740 415 258 83 38 chr4 20336011 20336144 -135293976 + B1F SINE Alu 1 139 -10 4 740 492 18 0 0 chr4 20336208 20336265 -135293855 - ORR1A1 LTR MaLR 0 346 290 4 740 2216 28 3 124 chr4 20336265 20336629 -135293491 + RLTR10 LTR ERVK 1 320 -70 4 740 234 236 34 0 chr4 20336662 20336751 -135293369 + RLTR10 LTR ERVK 227 318 -72 4 740 289 82 0 0 chr4 20336757 20336806 -135293314 + RLTR10 LTR ERVK 259 307 -83 4 740 981 106 18 12 chr4 20336811 20336974 -135293146 + RLTR10 LTR ERVK 227 390 0 4 740 14991 33 21 31 chr4 20336976 20338978 -135291142 + RLTR10-int LTR ERVK 3 1984 -3 4 740 2216 28 3 124 chr4 20338980 20339344 -135290776 + RLTR10 LTR ERVK 1 320 -70 4 740 264 67 0 0 chr4 20339344 20339389 -135290731 + RLTR10 LTR ERVK 263 307 -83 4 740 293 150 0 0 chr4 20339389 20339449 -135290671 + RLTR10 LTR ERVK 259 318 -72 4 740 289 82 0 0 chr4 20339455 20339504 -135290616 + RLTR10 LTR ERVK 259 307 -83 4 740 954 118 18 12 chr4 20339509 20339672 -135290448 + RLTR10 LTR ERVK 227 390 0 4 740 2452 30 0 3 chr4 20339672 20339967 -135290153 - ORR1A0 LTR MaLR -52 294 1 4 740 696 331 56 15 chr4 20340840 20341110 -135289010 - B4A SINE B4 -4 288 8 4 740 205 274 0 0 chr4 20341180 20341231 -135288889 + CT-rich Low_complexity Low_complexity 2 52 0 4 740 312 385 84 41 chr4 20341443 20341787 -135288333 - ORR1E LTR MaLR 0 359 1 4 740 297 0 0 0 chr4 20341884 20341917 -135288203 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 740 537 159 40 23 chr4 20342897 20343071 -135287049 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 740 282 29 0 0 chr4 20343437 20343472 -135286648 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 740 282 297 224 35 chr4 20344003 20344146 -135285974 - MLT1A0 LTR MaLR -43 322 153 4 740 255 269 26 0 chr4 20344794 20344872 -135285248 + T-rich Low_complexity Low_complexity 5 84 0 4 740 63 0 0 0 chr4 20344943 20345006 -135285114 + AT_rich Low_complexity Low_complexity 1 63 0 4 740 209 59 0 56 chr4 20345047 20345083 -135285037 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 4 740 192 40 0 0 chr4 20345881 20345906 -135284214 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 740 250 204 27 18 chr4 20345910 20346020 -135284100 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 740 3698 127 68 2 chr4 20346078 20346662 -135283458 + Lx4A LINE L1 6435 7057 -1 4 740 450 335 0 108 chr4 20346774 20346988 -135283132 + B3A SINE B2 6 196 -2 4 740 33786 36 0 0 chr4 20347782 20353457 -135276663 + L1Md_T LINE L1 1 5589 -297 4 740 9010 6 0 0 chr4 20353457 20354453 -135275667 + L1Md_T LINE L1 5590 6585 0 4 740 24 0 0 0 chr4 20354908 20354932 -135275188 + AT_rich Low_complexity Low_complexity 1 24 0 4 740 7509 54 13 4 chr4 20355844 20356914 -135273206 - L1Md_F2 LINE L1 -1 6581 5492 4 740 1555 188 160 80 chr4 20356996 20357558 -135272562 + Lx4B LINE L1 699 1305 -5781 4 740 9891 160 125 30 chr4 20357552 20359824 -135270296 + Lx4B LINE L1 3226 5730 -147 4 740 2061 121 104 8 chr4 20359824 20360181 -135269939 + Lx LINE L1 6264 6654 0 4 740 9891 168 167 48 chr4 20360181 20360401 -135269719 + Lx4B LINE L1 5731 6024 -1034 4 740 4900 180 26 48 chr4 20360776 20361144 -135268976 + Lx4B LINE L1 6009 6342 -716 4 740 1075 102 0 7 chr4 20361144 20361292 -135268828 - B1_Mm SINE Alu 0 147 1 4 740 4900 180 26 48 chr4 20361292 20361996 -135268124 + Lx4B LINE L1 6343 7058 0 4 740 2445 251 22 19 chr4 20362097 20362675 -135267445 + RLTR18 LTR ERVK 33 612 -4 4 740 414 0 0 0 chr4 20362746 20362792 -135267328 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 740 734 193 7 61 chr4 20362825 20363001 -135267119 + MTD LTR MaLR 1 168 -253 4 740 4305 93 50 3 chr4 20363249 20363863 -135266257 - Lx3_Mus LINE L1 -13 6996 6354 4 740 221 353 105 21 chr4 20363926 20364117 -135266003 - MIR SINE MIR -31 231 25 4 740 629 211 52 8 chr4 20364640 20364774 -135265346 + B1_Mur1 SINE Alu 1 140 -9 4 740 828 215 18 81 chr4 20364983 20365206 -135264914 - B3 SINE B2 -5 211 3 4 740 229 259 32 57 chr4 20365208 20365331 -135264789 + L1MC2 LINE L1 2007 2126 -4382 4 740 375 215 38 0 chr4 20365339 20365418 -135264702 + B3 SINE B2 135 216 0 4 740 1387 267 70 48 chr4 20365460 20366063 -135264057 + L1MC2 LINE L1 5388 5994 -525 4 740 2760 58 0 85 chr4 20366063 20366462 -135263658 + RLTR10B2 LTR ERVK 1 365 0 4 740 1387 266 72 50 chr4 20366462 20366768 -135263352 + L1MC2 LINE L1 5995 6318 -201 4 740 288 350 39 15 chr4 20366825 20367031 -135263089 + L1MC1 LINE L1 6123 6333 0 4 740 228 86 0 0 chr4 20367352 20367387 -135262733 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 740 432 289 0 0 chr4 20367396 20367510 -135262610 - Lx6 LINE L1 -148 7312 7199 4 740 273 262 49 14 chr4 20368023 20368166 -135261954 + Lx9 LINE L1 7482 7629 -15 4 740 1416 212 53 35 chr4 20368284 20368680 -135261440 - RMER17C LTR ERVK 0 410 8 4 740 730 291 84 55 chr4 20370409 20370718 -135259402 + MTE2a LTR MaLR 62 379 0 4 740 451 341 32 142 chr4 20372181 20372492 -135257628 + MER21B LTR ERV1 20 296 -567 4 740 873 321 62 14 chr4 20372499 20373142 -135256978 + L1MA6 LINE L1 5255 5939 -361 4 740 1173 113 5 65 chr4 20373298 20373342 -135256778 - B2_Mm2 SINE B2 -7 188 152 4 740 2330 87 3 12 chr4 20373342 20373670 -135256450 - L1Md_F2 LINE L1 -12 6570 6246 4 740 1173 113 5 65 chr4 20373670 20373824 -135256296 - B2_Mm2 SINE B2 -44 151 2 4 740 3026 60 10 17 chr4 20373836 20374242 -135255878 - L1Md_F2 LINE L1 -3 6579 6177 5 740 1119 193 14 0 chr4 20374301 20374519 -135255601 - URR1B DNA MER1_type 0 225 5 5 740 525 58 0 0 chr4 20375736 20375805 -135254315 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 740 480 62 0 0 chr4 20376246 20376310 -135253810 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 740 1123 191 18 14 chr4 20376640 20376863 -135253257 - URR1B DNA MER1_type 0 225 2 5 740 988 220 167 54 chr4 20379398 20379703 -135250417 - ORR1D2 LTR MaLR -8 371 1 5 740 408 338 149 80 chr4 20380043 20380129 -135249991 + MLT1D LTR MaLR 1 82 -423 5 740 5068 55 2 9 chr4 20380129 20380773 -135249347 + L1Md_F2 LINE L1 5940 6578 -4 5 740 408 338 149 80 chr4 20380773 20381123 -135248997 + MLT1D LTR MaLR 83 467 -38 5 740 798 144 0 0 chr4 20381203 20381383 -135248737 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 740 939 284 41 21 chr4 20381727 20382162 -135247958 - L1MA5 LINE L1 -227 6073 5630 5 740 324 273 55 61 chr4 20383872 20384036 -135246084 - MTEa LTR MaLR 0 379 208 5 740 354 238 218 0 chr4 20384071 20384135 -135245985 + ID_B1 SINE B4 94 157 -67 5 740 342 0 0 0 chr4 20384135 20384173 -135245947 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 740 354 238 218 0 chr4 20384173 20384209 -135245911 + ID_B1 SINE B4 158 215 -9 5 740 228 300 90 0 chr4 20384794 20384894 -135245226 + RLTR13D6 LTR ERVK 292 400 -502 5 740 2043 184 47 2 chr4 20388625 20389028 -135241092 + MTC LTR MaLR 1 421 0 5 740 2807 80 28 3 chr4 20389151 20389541 -135240579 + MTB LTR MaLR 1 400 0 5 740 1027 183 0 19 chr4 20389754 20389960 -135240160 + L1Md_F LINE L1 133 334 -6282 5 740 745 63 11 0 chr4 20389952 20390047 -135240073 + L1Md_F LINE L1 670 765 -5851 5 740 850 68 0 0 chr4 20390044 20390161 -135239959 + L1Md_F LINE L1 1857 1973 -3910 5 740 283 0 143 0 chr4 20390160 20390202 -135239918 + L1Md_A LINE L1 4713 4760 -1123 5 740 5082 25 0 0 chr4 20390195 20390789 -135239331 + L1Md_A LINE L1 4993 5586 -297 5 740 8475 31 0 0 chr4 20390789 20391785 -135238335 + L1Md_A LINE L1 5587 6582 0 5 740 432 319 178 35 chr4 20392129 20392737 -135237383 - L1M5 LINE L1 -3086 3060 2366 5 740 289 343 91 0 chr4 20393458 20393601 -135236519 + MTEa LTR MaLR 1 156 -223 5 740 403 323 93 25 chr4 20393748 20394026 -135236094 + MT2A LTR ERVL 334 559 -16 5 740 744 68 0 0 chr4 20394667 20394770 -135235350 + (GAAAA)n Simple_repeat Simple_repeat 2 104 0 5 740 37 23 0 0 chr4 20395725 20395769 -135234351 + AT_rich Low_complexity Low_complexity 1 44 0 5 740 525 309 18 18 chr4 20396311 20396479 -135233641 - ID_B1 SINE B4 0 224 65 5 740 218 226 32 0 chr4 20396994 20397056 -135233064 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5 740 1857 86 63 4 chr4 20397116 20397385 -135232735 + L1_Mus2 LINE L1 6282 6566 0 5 740 237 98 0 0 chr4 20398345 20398386 -135231734 + (A)n Simple_repeat Simple_repeat 1 41 0 5 740 227 308 13 0 chr4 20398533 20398611 -135231509 - ID4 SINE ID 0 83 5 5 740 312 314 57 18 chr4 20401942 20402113 -135228007 - MIRb SINE MIR -54 214 32 5 740 704 249 148 121 chr4 20402251 20402616 -135227504 + MTE2a LTR MaLR 5 379 0 5 740 234 81 0 0 chr4 20402760 20402797 -135227323 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 740 243 349 19 0 chr4 20403072 20403178 -135226942 + GA-rich Low_complexity Low_complexity 2 109 0 5 740 12813 191 59 25 chr4 20404678 20408358 -135221762 + Lx LINE L1 309 4096 -1790 5 740 711 166 94 0 chr4 20408355 20408515 -135221605 + Lx LINE L1 4500 4671 -1206 5 740 2714 97 25 5 chr4 20408560 20408955 -135221165 - L1_Mus1 LINE L1 -285 5598 5196 5 740 7308 73 1 0 chr4 20408951 20409893 -135220227 + L1_Mus1 LINE L1 5625 6567 0 5 740 249 57 0 0 chr4 20409955 20409990 -135220130 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 5 740 6156 186 50 40 chr4 20409990 20412024 -135218096 + Lx LINE L1 4624 6654 0 5 740 194 159 0 43 chr4 20412293 20412339 -135217781 + T-rich Low_complexity Low_complexity 5 48 0 5 740 511 149 19 0 chr4 20412334 20412441 -135217679 + CT-rich Low_complexity Low_complexity 2 110 0 5 740 224 346 24 36 chr4 20412455 20412539 -135217581 - ID2 SINE ID 0 83 1 5 740 883 92 15 0 chr4 20412746 20412876 -135217244 - L1_Mus3 LINE L1 -464 6174 6043 5 740 3022 102 18 5 chr4 20412876 20413321 -135216799 + L1_Mus3 LINE L1 6188 6638 0 5 740 380 337 51 24 chr4 20413562 20413844 -135216276 + MTEb LTR MaLR 80 379 0 5 740 298 385 10 0 chr4 20415155 20415251 -135214869 + PB1D10 SINE Alu 13 109 -8 5 740 247 258 95 110 chr4 20415609 20415809 -135214311 + MER63A DNA AcHobo 1 197 -13 5 740 23 0 0 0 chr4 20416373 20416396 -135213724 + AT_rich Low_complexity Low_complexity 1 23 0 5 740 1609 50 13 35 chr4 20417092 20417319 -135212801 + L1Md_F2 LINE L1 6360 6581 -1 5 740 705 234 14 0 chr4 20417922 20418063 -135212057 - B1_Mur1 SINE Alu -5 144 2 5 740 574 215 32 24 chr4 20419408 20419532 -135210588 + B1_Mur1 SINE Alu 25 149 0 5 740 297 329 13 0 chr4 20419877 20419956 -135210164 - MER2 DNA MER2_type -265 80 1 5 740 1345 260 52 25 chr4 20420240 20420646 -135209474 + MTD LTR MaLR 3 419 0 5 740 472 256 63 8 chr4 20421515 20421641 -135208479 - B3 SINE B2 -2 214 82 5 740 3128 142 13 17 chr4 20421643 20422167 -135207953 + Lx LINE L1 6131 6652 -2 5 740 200 186 17 0 chr4 20422338 20422397 -135207723 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 740 29 0 0 0 chr4 20422512 20422541 -135207579 + AT_rich Low_complexity Low_complexity 1 29 0 5 740 2146 120 107 0 chr4 20422562 20422945 -135207175 + MusHAL1 LINE L1 1954 2377 -335 5 740 1681 104 8 4 chr4 20422945 20423187 -135206933 - MTB_Mm LTR MaLR -164 243 1 5 740 53 40 0 0 chr4 20424836 20424910 -135205210 + AT_rich Low_complexity Low_complexity 1 74 0 5 740 38974 61 15 5 chr4 20425205 20432106 -135198014 - L1Md_T LINE L1 0 6582 99 5 740 1082 305 138 7 chr4 20432510 20433113 -135197007 - Lx8 LINE L1 -172 7301 6620 5 740 790 221 119 19 chr4 20433805 20434209 -135195911 + L1MDa LINE L1 2388 2824 -3713 5 740 248 308 77 59 chr4 20434262 20434586 -135195534 + L1MDa LINE L1 2926 3255 -3282 5 740 305 246 68 61 chr4 20434826 20434973 -135195147 - L1MEe LINE L1 -3992 862 715 5 740 330 67 0 0 chr4 20435234 20435279 -135194841 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 740 412 387 7 0 chr4 20435284 20435434 -135194686 - RSINE1 SINE B4 0 165 15 5 740 300 221 40 69 chr4 20436022 20436186 -135193934 + L1MA9 LINE L1 5849 6008 -283 5 740 315 0 0 0 chr4 20436710 20436745 -135193375 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 740 1005 86 29 0 chr4 20436748 20436888 -135193232 - B1_Mus1 SINE Alu -4 144 1 5 740 315 0 0 0 chr4 20438399 20438434 -135191686 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 740 461 325 33 93 chr4 20438445 20438659 -135191461 + B4A SINE B4 45 245 -47 5 740 570 143 0 0 chr4 20438704 20438809 -135191311 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 740 639 98 0 0 chr4 20439260 20439352 -135190768 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 740 8120 152 13 19 chr4 20439358 20440916 -135189204 + Lx2 LINE L1 5449 6997 0 5 740 262 284 30 0 chr4 20441729 20441796 -135188324 + ID4_ SINE ID 15 83 0 5 740 1451 178 207 0 chr4 20441848 20441899 -135188221 - ORR1B2 LTR MaLR 0 367 301 5 740 231 65 21 42 chr4 20441899 20441947 -135188173 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 740 1451 178 207 0 chr4 20441947 20442199 -135187921 - ORR1B2 LTR MaLR -67 300 2 5 740 1370 206 168 3 chr4 20443259 20443580 -135186540 - ORR1D1 LTR MaLR 0 374 1 5 740 241 309 73 73 chr4 20443583 20443747 -135186373 - RSINE1 SINE B4 0 165 2 5 740 207 69 0 0 chr4 20443854 20443883 -135186237 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5 740 800 196 28 70 chr4 20444393 20444861 -135185259 + RMER17C LTR ERVK 25 484 -325 5 740 264 371 19 0 chr4 20444870 20444975 -135185145 - B1F2 SINE Alu -41 108 2 5 740 227 310 68 11 chr4 20446511 20446599 -135183521 + L1M5 LINE L1 5486 5578 -546 5 92 384 346 31 0 chr4 20447140 20447267 -135182853 - B3A SINE B2 -3 195 65 5 741 614 250 29 0 chr4 20449471 20449607 -135180513 + B1_Mm SINE Alu 3 142 -5 5 741 354 381 46 15 chr4 20449805 20450066 -135180054 + HAL1 LINE L1 1467 1735 -772 5 741 476 270 96 0 chr4 20450297 20450412 -135179708 - ID_B1 SINE B4 -13 211 86 5 741 24 32 0 0 chr4 20450462 20450493 -135179627 + AT_rich Low_complexity Low_complexity 1 31 0 5 741 2112 168 79 45 chr4 20450494 20450913 -135179207 - Lx4A LINE L1 -3 7055 6623 5 741 593 190 22 7 chr4 20450935 20451073 -135179047 + RMER1C Other Other 1202 1341 -1 5 741 519 319 58 22 chr4 20451112 20451474 -135178646 + L1MA7 LINE L1 5512 5886 -405 5 741 1527 197 29 15 chr4 20451475 20451802 -135178318 - ORR1C1 LTR MaLR 0 378 5 5 741 379 269 83 15 chr4 20452082 20452214 -135177906 + B1F1 SINE Alu 9 149 0 5 741 707 78 48 0 chr4 20452766 20452869 -135177251 + B2_Mm2 SINE B2 1 108 -87 5 741 291 350 16 16 chr4 20452904 20453029 -135177091 - MamRep1879 DNA hAT? -90 126 2 5 741 223 181 28 0 chr4 20453769 20453841 -135176279 + (TA)n Simple_repeat Simple_repeat 1 74 0 5 741 214 182 23 0 chr4 20453853 20453897 -135176223 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 741 226 241 60 12 chr4 20454440 20454524 -135175596 + MER5A DNA MER1_type 102 189 0 5 741 297 128 0 0 chr4 20455371 20455418 -135174702 + (A)n Simple_repeat Simple_repeat 1 47 0 5 741 222 62 0 0 chr4 20455711 20455743 -135174377 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 741 2508 206 106 29 chr4 20456151 20456747 -135173373 - RMER1B Other Other -4 1062 421 5 741 594 100 0 0 chr4 20457922 20458022 -135172098 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 741 853 337 23 26 chr4 20459769 20460113 -135170007 - MLT1A0 LTR MaLR -12 353 11 5 741 297 315 90 19 chr4 20460427 20460579 -135169541 + MIRc SINE MIR 6 163 -45 5 741 245 27 54 0 chr4 20461149 20461186 -135168934 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 741 583 262 79 32 chr4 20462529 20462718 -135167402 - B3A SINE B2 0 198 1 6 741 759 278 97 78 chr4 20464021 20464403 -135165717 + Lx9 LINE L1 7041 7429 -215 6 741 290 275 73 0 chr4 20464577 20464670 -135165450 + B1_Mus2 SINE Alu 2 107 -10 6 741 245 342 127 8 chr4 20464578 20464696 -135165424 + ID_B1 SINE B4 84 215 -9 6 741 2863 80 3 0 chr4 20464924 20465298 -135164822 + L1_Mus2 LINE L1 6059 6433 -133 6 741 3258 46 2 10 chr4 20465299 20465698 -135164422 + MTA_Mm LTR MaLR 1 396 0 6 741 4533 92 13 6 chr4 20465698 20466458 -135163662 + MTA_Mm-int LTR MaLR 1 776 -482 6 741 289 307 57 28 chr4 20469690 20469831 -135160289 - L3 LINE CR1 0 4489 4345 6 741 227 210 32 0 chr4 20470286 20470348 -135159772 + Charlie5 DNA MER1_type 2252 2315 -309 6 741 1379 315 20 20 chr4 20471451 20471907 -135158213 - Lx5 LINE L1 0 7050 6595 6 741 633 14 0 0 chr4 20472671 20472745 -135157375 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 741 27 73 0 0 chr4 20472949 20473004 -135157116 + AT_rich Low_complexity Low_complexity 1 55 0 6 741 29 60 0 0 chr4 20473109 20473159 -135156961 + AT_rich Low_complexity Low_complexity 1 50 0 6 741 22 56 0 0 chr4 20474031 20474067 -135156053 + AT_rich Low_complexity Low_complexity 1 36 0 6 741 321 140 0 0 chr4 20474223 20474280 -135155840 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 741 21 104 0 0 chr4 20474476 20474553 -135155567 + AT_rich Low_complexity Low_complexity 1 77 0 6 741 2832 52 0 0 chr4 20475863 20476209 -135153911 + ORR1A1 LTR MaLR 1 346 0 6 741 613 301 37 8 chr4 20478214 20478455 -135151665 + L1MA5 LINE L1 5998 6245 -55 6 741 1200 98 0 0 chr4 20478700 20478873 -135151247 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 6 741 756 332 33 7 chr4 20480325 20480601 -135149519 - B4A SINE B4 -9 283 1 6 741 226 281 22 33 chr4 20480829 20480921 -135149199 + MTEb LTR MaLR 275 365 -14 6 741 303 295 132 9 chr4 20480993 20481099 -135149021 + Tigger5 DNA MER2_type 9 127 -2279 6 741 3275 96 48 43 chr4 20481133 20481669 -135148451 - Lx LINE L1 -4 6650 6112 6 741 322 303 82 27 chr4 20481692 20481838 -135148282 + Tigger5 DNA MER2_type 2245 2398 -8 6 741 235 333 9 36 chr4 20482066 20482178 -135147942 - MTEb LTR MaLR -24 355 247 6 741 369 43 0 0 chr4 20482937 20482984 -135147136 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 741 772 347 69 30 chr4 20483932 20484396 -135145724 + MLT1D LTR MaLR 24 505 0 6 741 24 53 0 0 chr4 20484838 20484876 -135145244 + AT_rich Low_complexity Low_complexity 1 38 0 6 741 360 64 0 0 chr4 20484958 20485005 -135145115 + (T)n Simple_repeat Simple_repeat 1 47 0 6 741 4343 12 0 0 chr4 20485579 20486067 -135144053 - L1Md_A LINE L1 -1 6581 6094 6 741 537 295 98 45 chr4 20486851 20487117 -135143003 - ORR1E LTR MaLR -45 314 35 6 741 189 0 0 0 chr4 20487667 20487688 -135142432 + (T)n Simple_repeat Simple_repeat 1 21 0 6 741 395 216 10 30 chr4 20488444 20488544 -135141576 - ORR1B2 LTR MaLR -2 365 268 6 741 1064 91 0 6 chr4 20488740 20488906 -135141214 + L1_Mus4 LINE L1 6472 6636 0 6 741 183 50 0 91 chr4 20489026 20489070 -135141050 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 6 741 500 157 26 19 chr4 20489140 20489296 -135140824 + (CAGAGA)n Simple_repeat Simple_repeat 2 158 0 6 741 10448 119 39 59 chr4 20490465 20491826 -135138294 + RLTR22_Mur LTR ERVK 1 1326 -522 6 741 432 0 0 0 chr4 20491826 20491874 -135138246 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 741 10448 119 39 59 chr4 20491874 20492379 -135137741 + RLTR22_Mur LTR ERVK 1327 1828 -20 6 741 4772 206 146 20 chr4 20494711 20495024 -135135096 + L1_Mur2 LINE L1 889 1275 -4602 6 741 4026 55 68 11 chr4 20495024 20495554 -135134566 - LTRIS2 LTR ERV1 0 564 5 6 741 4772 190 20 48 chr4 20495554 20496255 -135133865 + L1_Mur2 LINE L1 1276 1970 -3907 6 741 207 0 0 0 chr4 20496255 20496278 -135133842 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 741 4772 190 20 48 chr4 20496278 20496367 -135133753 + L1_Mur2 LINE L1 1971 2056 -3821 6 741 459 0 0 0 chr4 20496367 20496418 -135133702 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 741 4772 190 20 48 chr4 20496418 20496762 -135133358 + L1_Mur2 LINE L1 2057 2385 -3492 6 741 338 135 0 0 chr4 20496757 20496809 -135133311 + Lx5 LINE L1 5728 5779 -1271 6 741 864 127 0 0 chr4 20496828 20496954 -135133166 - B1_Mm SINE Alu -12 135 10 6 741 3170 190 113 20 chr4 20496958 20497698 -135132422 + Lx5 LINE L1 5789 6597 -453 6 741 1236 235 61 0 chr4 20497801 20498078 -135132042 + Lx5 LINE L1 6752 7045 -5 6 741 225 0 0 0 chr4 20498439 20498464 -135131656 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 741 219 183 0 53 chr4 20499535 20499610 -135130510 + CT-rich Low_complexity Low_complexity 3 73 0 6 741 483 343 0 0 chr4 20499643 20499783 -135130337 - B1_Mur1 SINE Alu -8 141 2 6 741 772 250 65 0 chr4 20499806 20499990 -135130130 - B3 SINE B2 0 216 21 6 741 29 0 0 0 chr4 20500322 20500351 -135129769 + AT_rich Low_complexity Low_complexity 1 29 0 1 741 325 250 38 0 chr4 20500713 20500793 -135129327 + B3 SINE B2 2 84 -132 2 741 4301 28 0 0 chr4 20502500 20502993 -135127127 + MT2_Mm LTR ERVL 1 493 0 3 741 26 0 0 0 chr4 20504678 20504704 -135125416 + AT_rich Low_complexity Low_complexity 1 26 0 4 741 1546 218 71 12 chr4 20508244 20508583 -135121537 - Lx5 LINE L1 -3 7047 6689 5 741 2600 37 6 0 chr4 20508663 20508986 -135121134 - MTA_Mm LTR MaLR 0 396 72 6 741 2421 121 8 5 chr4 20508995 20509378 -135120742 + Lx3_Mus LINE L1 6626 7009 0 7 741 244 102 0 39 chr4 20509379 20509430 -135120690 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 8 741 432 0 0 0 chr4 20510606 20510654 -135119466 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 741 419 244 11 11 chr4 20512198 20512289 -135117831 - MTE2b LTR MaLR -185 194 104 1 741 2262 158 38 15 chr4 20512289 20512687 -135117433 + MTB_Mm LTR MaLR 1 407 0 1 741 748 157 75 0 chr4 20512687 20512846 -135117274 + MTB_Mm-int LTR MaLR 1 171 -927 1 741 2319 127 42 3 chr4 20512871 20513250 -135116870 - ORR1B1 LTR MaLR 0 394 1 1 741 1708 109 4 0 chr4 20513403 20513650 -135116470 + ORR1A2 LTR MaLR 1 248 -79 1 741 1377 115 0 24 chr4 20513633 20513846 -135116274 + MTB LTR MaLR 193 400 0 1 741 906 278 96 28 chr4 20513910 20514265 -135115855 + MTE2b LTR MaLR 1 379 0 1 741 1805 129 46 0 chr4 20514988 20515290 -135114830 + Lx2A1 LINE L1 6693 7008 0 1 741 264 238 16 0 chr4 20515749 20515812 -135114308 - MER53 DNA hAT -120 73 10 1 741 312 91 0 0 chr4 20518902 20518946 -135111174 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 741 569 344 88 31 chr4 20519018 20519312 -135110808 + Tigger7 DNA MER2_type 167 477 -2014 1 741 231 346 87 0 chr4 20519472 20519576 -135110544 + MIRm SINE MIR 15 127 -149 2 741 334 43 0 0 chr4 20519612 20519658 -135110462 + Lx LINE L1 6597 6642 -12 2 741 234 231 31 182 chr4 20520029 20520188 -135109932 + Tigger10 DNA Tigger 1480 1614 -229 2 741 8290 157 23 1 chr4 20520226 20522207 -135107913 + Lx LINE L1 4313 6336 -318 2 741 433 115 40 30 chr4 20522207 20522306 -135107814 + Lx LINE L1 6549 6648 -6 2 741 401 336 26 33 chr4 20522439 20522590 -135107530 + RSINE1 SINE B4 6 155 -10 2 741 319 279 40 17 chr4 20522808 20522983 -135107137 - L1MC3 LINE L1 -60 7725 7547 2 741 459 280 75 35 chr4 20523544 20523718 -135106402 + B3A SINE B2 2 182 -16 2 741 396 0 0 0 chr4 20523745 20523789 -135106331 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 741 200 35 35 0 chr4 20523805 20523834 -135106286 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 741 878 212 41 55 chr4 20523925 20524144 -135105976 - Lx2 LINE L1 -2 6995 6780 2 741 6196 144 60 3 chr4 20524269 20525837 -135104283 - L1_Mus4 LINE L1 -7 6629 4981 3 741 13978 222 67 9 chr4 20525819 20526185 -135103935 - L1VL4 LINE L1 -2273 3870 3476 3 741 180 0 0 0 chr4 20526185 20526205 -135103915 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 741 13978 103 57 4 chr4 20526205 20527500 -135102620 - L1VL4 LINE L1 -439 3475 2074 3 741 5106 7 0 0 chr4 20527500 20528068 -135102052 - L1Md_T LINE L1 0 6582 6015 3 741 13978 109 43 6 chr4 20528068 20529341 -135100779 - L1VL4 LINE L1 -1841 2073 792 3 741 697 299 23 26 chr4 20529325 20529631 -135100489 - L1VL4 LINE L1 -3049 866 562 3 741 726 145 0 0 chr4 20529883 20530007 -135100113 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 741 209 288 101 76 chr4 20530388 20530546 -135099574 + L2 LINE L2 1476 1637 -1782 3 741 30 59 0 0 chr4 20530562 20530613 -135099507 + AT_rich Low_complexity Low_complexity 1 51 0 3 741 3242 222 59 12 chr4 20530619 20531377 -135098743 + ORR1B2-int LTR MaLR 716 1509 0 3 741 1720 195 35 46 chr4 20531377 20531490 -135098630 + ORR1B2 LTR MaLR 1 111 -256 3 741 189 0 0 0 chr4 20531490 20531511 -135098609 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 741 1720 195 35 46 chr4 20531511 20531768 -135098352 + ORR1B2 LTR MaLR 112 367 0 3 741 2690 261 60 34 chr4 20531776 20532446 -135097674 + L1_Mur3 LINE L1 1873 2538 -3342 3 741 192 40 0 0 chr4 20532446 20532471 -135097649 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 741 2690 262 61 34 chr4 20532471 20532865 -135097255 + L1_Mur3 LINE L1 2539 3094 -2783 3 741 462 83 0 0 chr4 20532865 20532937 -135097183 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 741 2023 293 163 19 chr4 20532937 20533342 -135096778 + L1_Mur3 LINE L1 3095 3545 -2332 3 741 21 0 0 0 chr4 20535551 20535572 -135094548 + AT_rich Low_complexity Low_complexity 1 21 0 4 741 627 71 0 0 chr4 20536012 20536097 -135094023 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 741 294 73 0 0 chr4 20536097 20536137 -135093983 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 741 285 295 208 8 chr4 20537726 20537856 -135092264 + RSINE1 SINE B4 1 156 -9 4 741 698 315 15 5 chr4 20538761 20538965 -135091155 - B4 SINE B4 -3 289 84 4 741 512 291 75 26 chr4 20539238 20539464 -135090656 + Lx8 LINE L1 6224 6460 -1013 4 741 275 0 19 74 chr4 20540928 20540982 -135089138 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 4 741 1302 219 38 86 chr4 20541680 20542075 -135088045 - ORR1C1 LTR MaLR 0 378 3 4 741 342 215 23 97 chr4 20542118 20542293 -135087827 + RMER17C LTR ERVK 99 260 -150 5 741 22 94 0 0 chr4 20542306 20542370 -135087750 + AT_rich Low_complexity Low_complexity 1 64 0 5 741 379 308 20 7 chr4 20542452 20542599 -135087521 + MER46C DNA MER2_type 162 310 -28 5 741 555 56 0 0 chr4 20542635 20542706 -135087414 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 741 254 263 118 154 chr4 20542816 20543039 -135087081 + MTE2b LTR MaLR 156 379 0 5 741 219 296 10 48 chr4 20544512 20544615 -135085505 + CT-rich Low_complexity Low_complexity 1 99 0 5 741 251 276 101 20 chr4 20544911 20545059 -135085061 + L1MB4 LINE L1 6020 6179 -1 5 741 198 0 0 0 chr4 20545579 20545601 -135084519 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 741 2123 224 17 7 chr4 20545721 20546180 -135083940 - Lx2B LINE L1 -297 6703 6240 5 741 307 390 36 6 chr4 20546263 20546428 -135083692 + MIR SINE MIR 3 172 -90 5 741 239 290 10 0 chr4 20547119 20547219 -135082901 + L1M2 LINE L1 5174 5274 -869 6 741 216 178 68 0 chr4 20547440 20547513 -135082607 + T-rich Low_complexity Low_complexity 2 79 0 6 741 2195 73 0 65 chr4 20547537 20547859 -135082261 - L1_Mus2 LINE L1 0 6566 6266 6 741 6969 133 30 4 chr4 20548662 20550033 -135080087 - Lx LINE L1 -5 6649 5235 6 741 312 252 67 8 chr4 20550177 20550297 -135079823 - L1MA4 LINE L1 -378 5922 5796 6 741 765 253 48 9 chr4 20550380 20550607 -135079513 + Lx6 LINE L1 7225 7460 0 6 741 375 286 116 39 chr4 20550703 20550961 -135079159 - L1MA4 LINE L1 -650 5653 5376 6 741 808 262 104 3 chr4 20551038 20551375 -135078745 - L1MA4 LINE L1 -873 5270 4900 6 741 409 295 126 13 chr4 20551368 20551822 -135078298 + L1MA4 LINE L1 4310 4814 -1329 6 741 1497 289 67 59 chr4 20552008 20552351 -135077769 + Lx5 LINE L1 6107 6445 -605 6 741 711 0 0 0 chr4 20552351 20552430 -135077690 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 6 741 1497 315 45 87 chr4 20552430 20552971 -135077149 + Lx5 LINE L1 6446 6985 -65 6 741 236 362 46 92 chr4 20553113 20553308 -135076812 - MER5C1 DNA MER1_type -64 199 14 6 741 211 368 35 0 chr4 20553817 20553904 -135076216 + L2b LINE L2 2979 3068 -307 6 741 626 293 104 110 chr4 20554017 20554553 -135075567 - RMER17B LTR ERVK -4 904 468 7 741 1445 196 37 7 chr4 20554793 20555091 -135075029 + RLTR1 LTR ERV1 318 624 0 7 741 1235 210 91 52 chr4 20555091 20555540 -135074580 - RMER17B LTR ERVK -386 520 1 7 741 270 0 0 0 chr4 20555801 20555831 -135074289 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 741 1417 242 17 17 chr4 20555831 20556186 -135073934 - Lx4B LINE L1 -8 7050 6695 7 741 544 299 38 24 chr4 20558724 20558933 -135071187 + B3 SINE B2 1 212 -4 7 741 3068 216 121 22 chr4 20559688 20560467 -135069653 + Lx9 LINE L1 6647 7476 -168 7 741 189 0 0 0 chr4 20560467 20560488 -135069632 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 741 3068 216 121 22 chr4 20560488 20560574 -135069546 + Lx9 LINE L1 7477 7598 -46 7 741 1046 78 12 29 chr4 20560602 20560774 -135069346 + L1_Mus3 LINE L1 6464 6632 -6 7 741 243 88 0 0 chr4 20560778 20560812 -135069308 + (A)n Simple_repeat Simple_repeat 1 34 0 7 741 21 0 0 0 chr4 20561189 20561210 -135068910 + AT_rich Low_complexity Low_complexity 1 21 0 8 741 441 159 383 0 chr4 20562405 20562512 -135067608 + Lx4A LINE L1 5591 5738 -1320 8 741 6792 59 2 4 chr4 20562529 20563006 -135067114 + Lx4B LINE L1 5112 5743 -1315 8 741 7698 66 3 11 chr4 20563006 20564007 -135066113 + L1Md_F2 LINE L1 5588 6580 -2 8 741 6792 193 21 15 chr4 20564007 20565303 -135064817 + Lx4B LINE L1 5744 7051 -7 8 741 410 188 77 150 chr4 20565865 20566049 -135064071 + L1_Rod LINE L1 5505 5665 -182 8 741 345 376 45 55 chr4 20566668 20566868 -135063252 + B3A SINE B2 1 198 0 8 741 786 297 51 11 chr4 20569097 20569528 -135060592 + L1MB3 LINE L1 5548 5996 -178 8 741 250 340 88 51 chr4 20569811 20570084 -135060036 + B4A SINE B4 2 284 -8 8 741 246 62 0 0 chr4 20570128 20570160 -135059960 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 741 280 160 75 0 chr4 20570203 20570297 -135059823 + (TA)n Simple_repeat Simple_repeat 1 101 0 8 741 28 61 0 0 chr4 20570561 20570610 -135059510 + AT_rich Low_complexity Low_complexity 1 49 0 9 741 1736 281 54 39 chr4 20570656 20571249 -135058871 + Lx6 LINE L1 6855 7456 -4 9 741 233 257 80 67 chr4 20571425 20571500 -135058620 + PB1D10 SINE Alu 30 105 -12 9 741 279 71 0 0 chr4 20571506 20571548 -135058572 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 9 741 917 64 0 8 chr4 20571549 20571675 -135058445 + (TCTCC)n Simple_repeat Simple_repeat 2 126 0 9 741 389 206 9 0 chr4 20572440 20572547 -135057573 + (TA)n Simple_repeat Simple_repeat 1 108 0 9 741 1881 302 35 45 chr4 20572564 20573367 -135056753 + Lx9 LINE L1 6402 7196 -448 9 741 226 200 25 114 chr4 20573421 20573500 -135056620 + Charlie6 DNA MER1_type 2283 2354 -1146 9 741 216 290 0 0 chr4 20573577 20573639 -135056481 + (TA)n Simple_repeat Simple_repeat 1 62 0 9 741 5938 182 20 8 chr4 20574227 20575091 -135055029 - Lx2 LINE L1 -1 6996 6125 9 741 3310 35 5 0 chr4 20575091 20575485 -135054635 + MTA_Mm LTR MaLR 1 396 0 1 741 5938 182 20 8 chr4 20575485 20575692 -135054428 - Lx2 LINE L1 -873 6124 5911 9 741 626 83 0 0 chr4 20575692 20575776 -135054344 + Lx2A LINE L1 5834 5917 -1091 1 741 23 0 0 0 chr4 20577131 20577154 -135052966 + AT_rich Low_complexity Low_complexity 1 23 0 1 742 3165 84 2 22 chr4 20578311 20578762 -135051358 - L1Md_F2 LINE L1 -5 6577 6136 1 742 3047 81 10 0 chr4 20578762 20579172 -135050948 - L1_Mm LINE L1 -641 5242 4829 1 742 643 258 19 31 chr4 20579990 20580250 -135049870 + L1_Mur3 LINE L1 892 1148 -6580 1 742 3639 47 2 0 chr4 20580246 20580697 -135049423 + L1Md_F2 LINE L1 5135 5586 -297 1 742 7655 67 0 8 chr4 20580698 20581698 -135048422 + L1Md_F2 LINE L1 5588 6579 -3 1 742 8100 228 36 56 chr4 20581756 20584147 -135045973 + L1_Mur3 LINE L1 1153 3482 -2395 1 742 243 61 0 0 chr4 20584147 20584180 -135045940 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 742 8100 229 33 58 chr4 20584180 20584454 -135045666 + L1_Mur3 LINE L1 3483 3748 -2129 1 742 769 235 69 53 chr4 20584460 20584755 -135045365 + RLTR12B LTR ERVK 39 298 -230 1 742 4881 191 67 35 chr4 20584791 20586023 -135044097 + L1_Mur3 LINE L1 3748 5018 -862 1 742 1023 109 0 0 chr4 20587456 20587593 -135042527 + B1_Mus1 SINE Alu 2 138 -10 1 742 216 0 0 0 chr4 20587593 20587617 -135042503 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 742 233 231 0 19 chr4 20589319 20589372 -135040748 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 742 748 328 82 0 chr4 20589372 20589665 -135040455 - Lx8 LINE L1 -156 7317 7001 1 742 1431 74 16 5 chr4 20590386 20590577 -135039543 + B2_Mm2 SINE B2 3 195 0 1 742 720 0 0 0 chr4 20590716 20590796 -135039324 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 1 742 236 322 72 67 chr4 20591228 20591421 -135038699 + MLT1F1 LTR MaLR 59 252 -317 1 742 949 280 106 26 chr4 20591605 20591944 -135038176 + MTD LTR MaLR 3 419 0 1 742 431 316 102 32 chr4 20592400 20592616 -135037504 - MIR SINE MIR -3 259 29 1 742 1864 190 6 6 chr4 20592900 20593234 -135036886 - Lx9 LINE L1 -179 7465 7132 1 742 849 171 30 24 chr4 20593232 20593400 -135036720 + Lx9 LINE L1 7293 7461 -183 1 742 485 233 78 22 chr4 20593450 20593555 -135036565 + L1M2 LINE L1 4979 5097 -1046 1 742 786 11 0 0 chr4 20593555 20593646 -135036474 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1 742 485 233 78 22 chr4 20593646 20593772 -135036348 + L1M2 LINE L1 5098 5223 -920 1 742 219 250 38 89 chr4 20593876 20593955 -135036165 + L2b LINE L2 3296 3370 -5 1 742 3499 165 35 14 chr4 20594986 20595615 -135034505 - RLTR26 LTR ERVK 0 642 1 1 742 610 121 30 0 chr4 20595786 20595885 -135034235 - Lx3B LINE L1 -4 6969 6868 1 742 294 125 0 0 chr4 20596410 20596458 -135033662 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 742 443 315 68 22 chr4 20597879 20598043 -135032077 - B3A SINE B2 0 216 45 1 742 203 0 37 0 chr4 20598074 20598101 -135032019 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 742 531 0 0 0 chr4 20598448 20598507 -135031613 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 742 624 27 0 0 chr4 20598517 20598591 -135031529 + (GGGAGA)n Simple_repeat Simple_repeat 3 76 0 1 742 186 103 0 0 chr4 20598598 20598627 -135031493 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 742 521 304 64 6 chr4 20598829 20599140 -135030980 + L1M4 LINE L1 4289 4617 -1529 1 742 261 0 0 0 chr4 20599438 20599467 -135030653 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 742 333 47 0 0 chr4 20601489 20601532 -135028588 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 742 686 343 8 40 chr4 20601564 20601813 -135028307 - B4 SINE B4 -48 244 4 1 742 246 86 16 49 chr4 20602861 20602922 -135027198 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 1 742 1054 75 0 0 chr4 20602932 20603066 -135027054 + B1_Mus1 SINE Alu 3 136 -12 1 742 180 0 0 0 chr4 20603067 20603087 -135027033 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 742 31 0 0 0 chr4 20603265 20603296 -135026824 + AT_rich Low_complexity Low_complexity 1 31 0 1 742 6618 122 40 1 chr4 20604470 20605578 -135024542 - Lx LINE L1 0 6654 5491 1 742 466 188 0 0 chr4 20605583 20605668 -135024452 - L1_Mur2 LINE L1 -738 5139 5055 1 742 870 248 218 55 chr4 20605663 20606096 -135024024 - Lx6 LINE L1 -256 7204 6701 1 742 231 88 0 0 chr4 20606403 20606437 -135023683 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 742 492 304 73 49 chr4 20608058 20608262 -135021858 - B3A SINE B2 -6 210 2 1 742 6124 207 12 35 chr4 20610633 20612119 -135018001 + Lx5 LINE L1 4450 5909 -1141 1 742 594 257 60 32 chr4 20612339 20612556 -135017564 + Lx6 LINE L1 7212 7434 -26 1 742 783 85 13 25 chr4 20614922 20615079 -135015041 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 1 742 642 65 0 0 chr4 20615080 20615172 -135014948 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 742 312 202 13 0 chr4 20615351 20615430 -135014690 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 742 2915 177 12 16 chr4 20615642 20616216 -135013904 - L1_Mur2 LINE L1 -934 4943 4372 1 742 369 0 0 0 chr4 20616236 20616277 -135013843 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 742 301 242 0 29 chr4 20616279 20616347 -135013773 + PB1D10 SINE Alu 49 114 -3 1 742 631 279 0 7 chr4 20617266 20617403 -135012717 - ID_B1 SINE B4 -8 216 81 1 742 28 48 0 0 chr4 20617775 20617817 -135012303 + AT_rich Low_complexity Low_complexity 1 42 0 1 742 1080 285 60 0 chr4 20618089 20618391 -135011729 + MERVL_2A-int LTR ERVL 4072 4391 -1370 1 742 2365 237 47 15 chr4 20618389 20619066 -135011054 + MERVL_2A-int LTR ERVL 4819 5519 -238 1 742 547 346 21 5 chr4 20623396 20623585 -135006535 - ID_B1 SINE B4 -30 194 3 1 742 603 27 0 0 chr4 20624349 20624422 -135005698 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 742 370 142 30 45 chr4 20624902 20625035 -135005085 + (TCTCTG)n Simple_repeat Simple_repeat 4 134 0 1 742 1383 279 87 24 chr4 20625220 20625792 -135004328 - Lx6 LINE L1 0 7460 6485 1 742 1188 280 75 7 chr4 20625783 20626239 -135003881 - Lx6 LINE L1 -675 6375 5870 1 742 182 286 78 39 chr4 20626768 20626870 -135003250 - L2 LINE L2 -522 2897 2792 1 742 1386 299 41 18 chr4 20626967 20627409 -135002711 + MT2A LTR ERVL 10 461 -72 1 742 230 207 17 0 chr4 20627638 20627696 -135002424 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 742 492 200 22 0 chr4 20628306 20628441 -135001679 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 742 204 242 15 46 chr4 20628441 20628506 -135001614 + GA-rich Low_complexity Low_complexity 2 64 0 1 742 566 270 114 36 chr4 20628591 20628810 -135001310 + B4A SINE B4 8 243 -49 1 742 473 336 19 50 chr4 20628806 20628915 -135001205 + RSINE1 SINE B4 11 117 -48 1 742 2267 53 0 3 chr4 20628915 20629201 -135000919 - L1_Mus1 LINE L1 0 6567 6283 1 742 473 336 19 50 chr4 20629201 20629251 -135000869 + RSINE1 SINE B4 118 165 0 1 742 27 29 0 0 chr4 20629251 20629285 -135000835 + AT_rich Low_complexity Low_complexity 1 34 0 1 742 414 39 0 0 chr4 20629392 20629444 -135000676 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 742 360 0 0 0 chr4 20629444 20629483 -135000637 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 742 730 306 120 50 chr4 20629792 20630267 -134999853 + LTR40a LTR ERVL 7 514 -5 1 742 28 29 0 0 chr4 20630857 20630892 -134999228 + AT_rich Low_complexity Low_complexity 1 35 0 1 742 409 265 60 0 chr4 20631368 20631485 -134998635 - MER2 DNA MER2_type -141 204 81 1 742 808 274 17 17 chr4 20632452 20632682 -134997438 + MT2A LTR ERVL 3 232 -301 1 742 595 250 67 48 chr4 20632694 20632904 -134997216 - L1M3 LINE L1 -442 5738 5525 1 742 2334 60 146 0 chr4 20633267 20633602 -134996518 - L1_Mus3 LINE L1 -7 6631 6248 1 742 954 219 14 48 chr4 20634228 20634520 -134995600 - Lx9 LINE L1 -10 7634 7353 1 742 234 0 0 0 chr4 20634568 20634594 -134995526 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 742 180 317 33 0 chr4 20636052 20636112 -134994008 - L3 LINE CR1 -2348 2141 2080 1 742 28 0 0 0 chr4 20637563 20637591 -134992529 + AT_rich Low_complexity Low_complexity 1 28 0 1 742 25 0 0 0 chr4 20638063 20638088 -134992032 + AT_rich Low_complexity Low_complexity 1 25 0 1 742 1706 152 28 3 chr4 20638111 20638401 -134991719 + RMER6B LTR ERVK 1 297 -164 1 742 240 59 0 0 chr4 20638402 20638436 -134991684 + (TGG)n Simple_repeat Simple_repeat 1 34 0 1 742 25 0 0 0 chr4 20638436 20638461 -134991659 + AT_rich Low_complexity Low_complexity 1 25 0 1 742 7187 33 1 0 chr4 20640353 20641207 -134988913 + L1Md_T LINE L1 5728 6582 0 1 742 553 325 77 50 chr4 20642542 20642918 -134987202 - ORR1E LTR MaLR 0 394 3 1 742 2869 305 41 26 chr4 20643684 20644761 -134985359 + Lx9 LINE L1 6376 7468 -176 1 742 236 127 18 0 chr4 20644834 20644889 -134985231 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 742 33 25 0 0 chr4 20645024 20645064 -134985056 + AT_rich Low_complexity Low_complexity 1 40 0 1 742 859 284 100 8 chr4 20645188 20645447 -134984673 + ORR1E LTR MaLR 2 284 -75 1 742 396 250 10 20 chr4 20646232 20646330 -134983790 + ORR1B2 LTR MaLR 3 99 -268 1 742 209 236 41 14 chr4 20646741 20646814 -134983306 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 1 742 1021 29 7 21 chr4 20647684 20647827 -134982293 - L1Md_F2 LINE L1 -1 6581 6441 1 742 67 0 0 0 chr4 20647848 20647915 -134982205 + AT_rich Low_complexity Low_complexity 1 67 0 1 742 359 287 103 63 chr4 20648106 20648437 -134981683 + MLT1H-int LTR MaLR 100 443 -966 1 742 325 339 101 75 chr4 20648780 20649048 -134981072 + MLT1H-int LTR MaLR 958 1232 -177 1 742 648 0 46 0 chr4 20651194 20651281 -134978839 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1 742 206 196 0 42 chr4 20652696 20652744 -134977376 + GA-rich Low_complexity Low_complexity 2 47 0 1 742 243 279 32 16 chr4 20653201 20653325 -134976795 + L1M4 LINE L1 4879 5004 -1142 1 742 332 219 204 7 chr4 20653382 20653529 -134976591 + L1M2 LINE L1 5164 5339 -804 1 742 371 279 148 31 chr4 20653545 20653774 -134976346 + L1M4 LINE L1 5402 5657 -517 1 742 438 305 118 62 chr4 20654039 20654200 -134975920 + B3A SINE B2 1 170 -28 1 742 1648 213 140 123 chr4 20654465 20655255 -134974865 - RMER6C LTR ERVK 0 720 1 2 742 4112 93 10 12 chr4 20655363 20655950 -134974170 + L1_Mus2 LINE L1 5981 6566 0 2 742 277 319 14 35 chr4 20656200 20656343 -134973777 - L1MC1 LINE L1 -13 6331 6192 2 742 749 309 70 51 chr4 20656340 20656971 -134973149 - L1MC1 LINE L1 -374 5959 5317 2 742 357 24 0 0 chr4 20657185 20657227 -134972893 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 742 216 0 0 0 chr4 20657227 20657250 -134972870 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 742 450 0 0 0 chr4 20658187 20658237 -134971883 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 742 443 315 70 0 chr4 20658921 20659064 -134971056 + RSINE1 SINE B4 3 155 -10 2 742 26 30 0 0 chr4 20659791 20659824 -134970296 + AT_rich Low_complexity Low_complexity 1 33 0 2 742 486 266 131 16 chr4 20662008 20662199 -134967921 - MER2 DNA MER2_type -36 309 97 2 742 703 130 0 14 chr4 20662346 20662494 -134967626 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 2 742 24 32 0 0 chr4 20662956 20662987 -134967133 + AT_rich Low_complexity Low_complexity 1 31 0 2 742 336 330 9 19 chr4 20662993 20663101 -134967019 + PB1D10 SINE Alu 8 114 -3 2 742 219 317 20 0 chr4 20663379 20663480 -134966640 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 742 21 0 0 0 chr4 20664843 20664864 -134965256 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 483 268 40 68 chr4 20665515 20665748 -134964372 + Lx9 LINE L1 7297 7516 -128 2 742 603 27 0 0 chr4 20665748 20665821 -134964299 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 742 483 268 40 68 chr4 20665821 20665939 -134964181 + Lx9 LINE L1 7517 7638 -6 2 742 1378 212 102 26 chr4 20666100 20666444 -134963676 - ORR1C2 LTR MaLR -12 372 3 2 742 180 0 0 0 chr4 20667222 20667242 -134962878 + (A)n Simple_repeat Simple_repeat 1 20 0 2 742 498 175 10 40 chr4 20668676 20668777 -134961343 + RLTR17 LTR ERVK 518 615 -77 2 742 239 218 0 35 chr4 20668752 20668809 -134961311 + RLTR31_Mur LTR ERVK 499 553 0 2 742 746 22 11 0 chr4 20668896 20668988 -134961132 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 2 742 389 109 16 0 chr4 20668992 20669056 -134961064 + (GGGGA)n Simple_repeat Simple_repeat 2 66 0 2 742 4641 83 8 3 chr4 20671511 20672150 -134957970 + L1_Mus2 LINE L1 5925 6566 0 2 742 215 318 0 0 chr4 20672250 20672316 -134957804 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 742 231 224 0 49 chr4 20673140 20673201 -134956919 + GA-rich Low_complexity Low_complexity 2 59 0 2 742 333 62 15 45 chr4 20674383 20674450 -134955670 + (TTTTA)n Simple_repeat Simple_repeat 3 67 0 2 742 937 97 90 0 chr4 20674475 20674609 -134955511 - B1_Mus2 SINE Alu -1 146 1 2 742 213 225 0 0 chr4 20674724 20674764 -134955356 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 742 558 0 0 0 chr4 20675412 20675474 -134954646 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 742 243 0 0 0 chr4 20675491 20675518 -134954602 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 742 1109 72 0 0 chr4 20675518 20675656 -134954464 - B1_Mm SINE Alu -9 138 1 2 742 210 306 0 0 chr4 20680584 20680633 -134949487 - L2c LINE L2 -5 3382 3334 2 742 696 165 0 0 chr4 20680973 20681131 -134948989 + CT-rich Low_complexity Low_complexity 1 158 0 2 742 423 0 0 0 chr4 20681131 20681178 -134948942 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 742 772 252 119 50 chr4 20681179 20681502 -134948618 - MT2B LTR ERVL -58 543 81 2 742 355 341 8 31 chr4 20681499 20681629 -134948491 - MT2B LTR ERVL -401 132 6 2 742 309 26 0 0 chr4 20682103 20682141 -134947979 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 742 5160 174 18 55 chr4 20682477 20683465 -134946655 + Lx4A LINE L1 6105 7056 -2 2 742 189 107 0 0 chr4 20684002 20684030 -134946090 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2 742 2262 309 81 38 chr4 20684312 20685451 -134944669 + RMER1C Other Other 28 1215 -127 2 742 324 239 0 0 chr4 20685452 20685592 -134944528 + CT-rich Low_complexity Low_complexity 1 140 0 2 742 451 238 111 0 chr4 20685593 20685719 -134944401 + RMER1C Other Other 1203 1342 0 2 742 188 0 0 69 chr4 20685903 20685932 -134944188 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2 742 24 0 0 0 chr4 20686102 20686126 -134943994 + AT_rich Low_complexity Low_complexity 1 24 0 2 742 216 86 0 0 chr4 20686801 20686836 -134943284 + (ACTG)n Simple_repeat Simple_repeat 3 37 0 2 742 1966 224 8 172 chr4 20687275 20687543 -134942577 - RMER19C LTR ERVK -2 609 373 2 742 306 0 0 0 chr4 20687543 20687577 -134942543 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 742 1966 224 8 172 chr4 20687577 20688036 -134942084 - RMER19C LTR ERVK -239 372 1 2 742 228 285 69 106 chr4 20688370 20688515 -134941605 + MIR SINE MIR 22 157 -105 2 742 463 279 45 34 chr4 20689571 20689749 -134940371 + B3A SINE B2 3 182 -16 2 742 189 74 0 0 chr4 20689749 20689776 -134940344 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 742 26 30 0 0 chr4 20690083 20690116 -134940004 + AT_rich Low_complexity Low_complexity 1 33 0 2 742 2515 217 75 36 chr4 20690270 20690991 -134939129 + Lx9 LINE L1 6895 7643 -1 2 742 22 56 0 0 chr4 20691072 20691108 -134939012 + AT_rich Low_complexity Low_complexity 1 36 0 2 742 433 309 140 22 chr4 20691447 20691669 -134938451 - B4A SINE B4 -14 278 31 2 742 1051 30 15 0 chr4 20691713 20691848 -134938272 + (TG)n Simple_repeat Simple_repeat 2 138 0 2 742 615 260 70 13 chr4 20691849 20692005 -134938115 - B3 SINE B2 -36 180 16 2 742 21 0 0 0 chr4 20696736 20696757 -134933363 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 520 332 107 14 chr4 20696840 20697230 -134932890 - MER63B DNA AcHobo -3 433 6 2 742 253 304 62 52 chr4 20697435 20697532 -134932588 + ID_B1 SINE B4 81 178 -46 2 742 279 114 0 0 chr4 20697554 20697598 -134932522 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 742 189 74 0 0 chr4 20697660 20697687 -134932433 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 742 910 164 19 6 chr4 20698616 20698775 -134931345 + RMER15 LTR ERVL 8 168 -407 2 742 618 89 0 0 chr4 20699079 20699169 -134930951 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 742 226 67 0 0 chr4 20700846 20700876 -134929244 + MT2A LTR ERVL 500 529 -4 2 742 783 223 117 0 chr4 20701225 20701413 -134928707 + B3 SINE B2 2 211 -5 2 742 710 313 30 0 chr4 20702831 20703064 -134927056 + MER63D DNA AcHobo 4 243 -818 2 742 1240 253 62 28 chr4 20703426 20703751 -134926369 + MTD LTR MaLR 3 338 -81 2 742 459 0 0 0 chr4 20705881 20705932 -134924188 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 742 383 108 0 30 chr4 20706782 20706849 -134923271 + (GAAAA)n Simple_repeat Simple_repeat 4 68 0 2 742 267 299 45 71 chr4 20706890 20706966 -134923154 + MT2B LTR ERVL 90 161 -440 2 742 375 244 13 0 chr4 20706966 20707059 -134923061 + B1_Mur3 SINE Alu 2 99 -21 2 742 297 0 0 0 chr4 20707350 20707383 -134922737 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 742 1133 57 0 21 chr4 20707412 20707547 -134922573 + B1_Mus1 SINE Alu 3 135 -13 2 742 198 0 0 0 chr4 20707547 20707569 -134922551 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 92 1444 188 70 80 chr4 20709075 20709463 -134920657 - ORR1C2 LTR MaLR 0 384 1 2 743 21 0 0 0 chr4 20710640 20710661 -134919459 + AT_rich Low_complexity Low_complexity 1 21 0 2 743 1471 84 9 13 chr4 20711265 20711493 -134918627 - L1Md_F3 LINE L1 0 6584 6358 2 743 288 311 28 69 chr4 20711533 20711678 -134918442 + LTR16C LTR ERVL 319 457 -32 2 743 728 273 63 74 chr4 20713053 20713404 -134916716 - ORR1E LTR MaLR 0 379 1 2 743 1183 266 103 20 chr4 20713540 20713911 -134916209 - MTD LTR MaLR -14 405 5 2 743 331 329 56 43 chr4 20713944 20714106 -134916014 - MLT1A0 LTR MaLR -14 351 188 2 743 1058 214 9 31 chr4 20714225 20714452 -134915668 - URR1B DNA MER1_type -3 222 1 2 743 859 225 37 16 chr4 20714994 20715184 -134914936 - B3 SINE B2 0 216 23 2 743 1046 67 0 0 chr4 20715603 20715738 -134914382 + B1_Mus2 SINE Alu 13 147 0 2 743 324 120 0 0 chr4 20715738 20715788 -134914332 + (A)n Simple_repeat Simple_repeat 1 50 0 2 743 199 329 14 0 chr4 20716123 20716193 -134913927 + MIRm SINE MIR 205 275 -1 2 743 3283 179 12 12 chr4 20716629 20717207 -134912913 + RLTR20A2 LTR ERVK 1 578 0 2 743 476 297 144 15 chr4 20717207 20717402 -134912718 - MER2 DNA MER2_type -107 238 19 2 743 838 177 17 11 chr4 20717719 20717896 -134912224 - Lx6 LINE L1 -708 6752 6575 2 743 917 172 40 0 chr4 20717898 20718072 -134912048 - URR1A DNA MER1_type 0 226 46 2 743 303 228 49 25 chr4 20718767 20718848 -134911272 + RMER13A LTR ERVK 1 83 -777 2 743 1446 337 52 77 chr4 20718849 20720432 -134909688 - RodERV21-int LTR ERV1 -719 4272 2729 2 743 5134 139 27 2 chr4 20720890 20721705 -134908415 - Lx2 LINE L1 0 6997 6163 2 743 3255 140 4 8 chr4 20721708 20722226 -134907894 - RMER17A2 LTR ERVK -4 902 387 2 743 7304 79 5 2 chr4 20722235 20723592 -134906528 + L1_Mus1 LINE L1 5205 6565 -2 2 743 1995 119 29 40 chr4 20723598 20723948 -134906172 - RMER17A2 LTR ERVK -560 346 1 2 743 3224 133 36 0 chr4 20723948 20724236 -134905884 - Lx2 LINE L1 -829 6168 5876 2 743 447 19 0 0 chr4 20724236 20724288 -134905832 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 743 5526 174 9 27 chr4 20724288 20725440 -134904680 - Lx2 LINE L1 -20 5863 4732 2 743 33936 65 2 1 chr4 20725452 20730990 -134899130 - L1Md_F2 LINE L1 0 6582 1071 2 743 29 0 0 0 chr4 20731092 20731121 -134898999 + AT_rich Low_complexity Low_complexity 1 29 0 2 743 38481 17 3 6 chr4 20731231 20737622 -134892498 - L1Md_A LINE L1 -1 6581 213 2 743 1018 115 0 7 chr4 20738003 20738142 -134891978 + B1_Mus1 SINE Alu 1 139 -9 2 743 231 36 0 0 chr4 20738142 20738170 -134891950 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 743 749 283 22 0 chr4 20738310 20738494 -134891626 + B3 SINE B2 1 188 -28 2 743 1135 82 0 0 chr4 20738498 20738644 -134891476 + B1_Mm SINE Alu 2 147 0 3 743 185 0 40 0 chr4 20738648 20738673 -134891447 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 743 234 0 0 0 chr4 20739120 20739146 -134890974 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 743 813 133 0 0 chr4 20739147 20739282 -134890838 + (GGGAGA)n Simple_repeat Simple_repeat 3 137 0 3 743 246 194 0 0 chr4 20742038 20742110 -134888010 + GA-rich Low_complexity Low_complexity 1 72 0 3 743 214 268 18 0 chr4 20743050 20743106 -134887014 + ID4_ SINE ID 6 62 -21 3 743 225 255 0 18 chr4 20743106 20743162 -134886958 + GA-rich Low_complexity Low_complexity 2 56 0 3 743 716 152 8 0 chr4 20743260 20743392 -134886728 + GA-rich Low_complexity Low_complexity 1 133 0 3 743 696 291 95 5 chr4 20743868 20744058 -134886062 + B3 SINE B2 9 215 -1 3 743 315 0 0 0 chr4 20745229 20745264 -134884856 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 743 1152 57 0 0 chr4 20745271 20745412 -134884708 - B1_Mus2 SINE Alu -6 141 1 3 743 423 112 0 0 chr4 20745816 20745896 -134884224 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 743 308 148 58 19 chr4 20745915 20746018 -134884102 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 743 26 0 0 0 chr4 20746064 20746090 -134884030 + AT_rich Low_complexity Low_complexity 1 26 0 3 743 1096 95 0 0 chr4 20746093 20746241 -134883879 - B1_Mus1 SINE Alu 0 148 1 3 743 430 304 0 19 chr4 20746356 20746460 -134883660 + B1_Mur2 SINE Alu 5 106 -43 3 743 304 286 159 0 chr4 20746646 20746772 -134883348 + L1M2 LINE L1 4910 5055 -1088 3 743 291 212 271 0 chr4 20746778 20746863 -134883257 - MTEa LTR MaLR -271 108 1 3 743 3211 225 106 68 chr4 20748307 20749229 -134880891 + Lx7 LINE L1 4733 5728 -152 3 743 615 245 58 0 chr4 20749229 20749368 -134880752 + B1_Mus1 SINE Alu 1 147 -1 3 743 3211 236 104 69 chr4 20749368 20749844 -134880276 + Lx7 LINE L1 5729 6167 -1529 3 743 597 118 0 0 chr4 20749844 20749954 -134880166 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 743 2578 241 103 70 chr4 20749954 20750305 -134879815 + Lx7 LINE L1 6168 6597 -1099 3 743 457 211 29 36 chr4 20750677 20750815 -134879305 - RMER17C-int LTR ERVK 0 3238 3102 3 743 729 256 92 56 chr4 20750840 20751248 -134878872 - RMER17C-int LTR ERVK -226 3012 2627 3 743 602 278 84 87 chr4 20752077 20752484 -134877636 + RLTR12B LTR ERVK 1 420 -107 3 743 4513 143 12 2 chr4 20752611 20753427 -134876693 + L1_Mm LINE L1 4111 4934 -949 3 743 1565 178 0 3 chr4 20753426 20753731 -134876389 + L1_Mm LINE L1 4433 4736 -1147 3 743 315 65 0 0 chr4 20753731 20753777 -134876343 + (A)n Simple_repeat Simple_repeat 1 46 0 3 743 932 236 13 23 chr4 20753795 20754095 -134876025 + L1VL1 LINE L1 1 297 -6125 3 743 1618 154 35 3 chr4 20754118 20754431 -134875689 + L1Md_F LINE L1 3 325 -6194 3 743 6214 105 50 0 chr4 20754426 20755400 -134874720 + L1Md_F LINE L1 3 1025 -5494 3 743 35953 19 2 7 chr4 20755400 20760757 -134869363 + L1Md_A LINE L1 261 5586 -297 3 743 8669 21 0 0 chr4 20760758 20761753 -134868367 + L1Md_A LINE L1 5588 6582 0 3 743 180 125 0 0 chr4 20762093 20762125 -134867995 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 3 743 212 242 29 29 chr4 20762965 20763033 -134867087 + CT-rich Low_complexity Low_complexity 1 68 0 3 743 201 296 0 18 chr4 20763589 20763644 -134866476 + L2c LINE L2 3273 3326 -61 3 743 210 71 0 0 chr4 20763972 20764000 -134866120 + (TTC)n Simple_repeat Simple_repeat 2 29 0 3 743 2333 97 6 6 chr4 20764008 20764339 -134865781 - L1_Mus1 LINE L1 0 6567 6237 3 743 4910 105 62 4 chr4 20764346 20765848 -134864272 - L1Md_F LINE L1 -3908 1975 387 3 743 264 122 0 0 chr4 20768388 20768429 -134861691 + (GGGAGA)n Simple_repeat Simple_repeat 2 42 0 3 743 310 355 70 26 chr4 20768819 20768975 -134861145 + LTR16B LTR ERVL 299 461 -2 3 743 273 39 59 0 chr4 20769607 20769658 -134860462 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 743 781 132 35 29 chr4 20769882 20769898 -134860222 - RMER17B LTR ERVK -481 477 463 3 743 290 45 23 0 chr4 20769898 20769942 -134860178 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 3 743 781 132 35 29 chr4 20769942 20770097 -134860023 - RMER17B LTR ERVK -496 462 305 3 743 720 343 91 30 chr4 20771095 20771459 -134858661 + LTR16E1 LTR ERVL 152 537 -1 3 743 191 269 104 0 chr4 20771868 20771935 -134858185 + L4 LINE RTE 1339 1412 -617 3 743 360 0 0 0 chr4 20772084 20772124 -134857996 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 743 3023 247 53 65 chr4 20772191 20772518 -134857602 - Lx5 LINE L1 -18 7032 6629 3 743 351 0 0 0 chr4 20772518 20772557 -134857563 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 743 3023 249 90 69 chr4 20772557 20773717 -134856403 - Lx5 LINE L1 -422 6628 5521 3 743 544 197 67 11 chr4 20773712 20773892 -134856228 - L1_Mur3 LINE L1 -4242 1638 1449 3 743 551 258 4 91 chr4 20773889 20774132 -134855988 - L1_Mur3 LINE L1 -6693 1035 814 3 743 4840 156 46 70 chr4 20774793 20775538 -134854582 - Lx4A LINE L1 -2 7056 6339 3 743 1093 56 35 0 chr4 20775538 20775681 -134854439 - B1_Mus1 SINE Alu 0 148 1 3 743 4840 156 46 70 chr4 20775681 20775947 -134854173 - Lx4A LINE L1 -720 6338 6069 3 743 754 275 113 77 chr4 20776120 20776561 -134853559 + MT2B2 LTR ERVL 1 536 -48 3 743 410 83 0 14 chr4 20776561 20776634 -134853486 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 743 754 272 98 75 chr4 20776634 20776688 -134853432 + MT2B2 LTR ERVL 537 584 0 3 743 592 290 39 24 chr4 20777223 20777428 -134852692 + B4A SINE B4 12 219 -73 3 743 305 242 10 29 chr4 20777428 20777530 -134852590 + (CATA)n Simple_repeat Simple_repeat 3 102 0 3 743 308 298 105 0 chr4 20777632 20777756 -134852364 - L1M4b LINE L1 -6104 1230 1094 3 743 411 343 71 24 chr4 20777941 20778195 -134851925 - L1M4b LINE L1 -6472 862 597 3 743 320 417 58 21 chr4 20778243 20778434 -134851686 - L1M4b LINE L1 -6837 497 300 3 743 1527 222 80 9 chr4 20778443 20778779 -134851341 - ORR1B2 LTR MaLR -7 360 1 3 743 1753 211 38 27 chr4 20779310 20779676 -134850444 + MTB_Mm LTR MaLR 1 370 -37 3 743 864 322 66 21 chr4 20779674 20779979 -134850141 + MTD LTR MaLR 58 380 -39 3 743 1520 206 36 22 chr4 20779979 20780341 -134849779 - ORR1B2 LTR MaLR 0 367 1 3 743 864 322 66 21 chr4 20780341 20780368 -134849752 + MTD LTR MaLR 381 405 -14 3 743 243 0 0 0 chr4 20780677 20780704 -134849416 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 743 183 42 0 0 chr4 20781156 20781180 -134848940 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 743 283 312 47 16 chr4 20781305 20781432 -134848688 - L1M5 LINE L1 -2322 3824 3694 3 743 2718 58 3 6 chr4 20782997 20783343 -134846777 - IAPLTR4 LTR ERVK 0 345 1 3 743 6719 240 47 32 chr4 20783343 20786514 -134843606 - IAPEY3-int LTR ERVK -351 7329 4394 3 743 5880 236 19 16 chr4 20786481 20787848 -134842272 - IAPEY3-int LTR ERVK -5114 1707 337 3 743 870 215 15 25 chr4 20787875 20788071 -134842049 - IAPEY3-int LTR ERVK -6625 196 3 3 743 2661 76 3 0 chr4 20788073 20788417 -134841703 - IAPLTR4 LTR ERVK 0 345 1 3 743 2228 291 66 40 chr4 20789402 20790156 -134839964 + Lx8 LINE L1 6351 7124 -349 3 743 1031 194 5 5 chr4 20790183 20790375 -134839745 + MT2A LTR ERVL 1 192 -341 3 743 1181 345 38 40 chr4 20790442 20791145 -134838975 + Lx8 LINE L1 6770 7471 -2 3 743 32 43 0 0 chr4 20791227 20791273 -134838847 + AT_rich Low_complexity Low_complexity 1 46 0 3 743 261 0 0 0 chr4 20791912 20791941 -134838179 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 743 250 289 0 49 chr4 20793525 20793627 -134836493 + Lx9 LINE L1 7372 7468 -176 3 743 10151 21 0 0 chr4 20795965 20797160 -134832960 - L1_Mm LINE L1 -1243 4640 3446 3 743 2173 0 0 0 chr4 20797160 20797403 -134832717 + L1Md_T LINE L1 6340 6582 0 3 743 259 291 103 57 chr4 20797916 20798091 -134832029 - ORR1E LTR MaLR -152 207 25 3 743 1153 75 0 0 chr4 20798166 20798312 -134831808 - B1_Mus2 SINE Alu 0 147 2 3 743 1225 249 77 58 chr4 20798507 20799146 -134830974 + L1Md_F LINE L1 395 1011 -5623 3 743 9796 111 9 5 chr4 20799143 20800630 -134829490 + L1Md_F LINE L1 2492 3985 -1898 3 743 1637 103 8 4 chr4 20800627 20800870 -134829250 + L1_Mus2 LINE L1 6287 6530 -36 3 743 948 192 41 32 chr4 20801076 20801296 -134828824 - URR1B DNA MER1_type -3 222 1 3 743 432 0 0 0 chr4 20801388 20801436 -134828684 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 743 384 59 0 0 chr4 20801436 20801486 -134828634 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 743 554 247 43 11 chr4 20801602 20801786 -134828334 - L1M3 LINE L1 -420 5769 5580 3 743 180 0 0 0 chr4 20801905 20801925 -134828195 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 743 3419 81 25 2 chr4 20801925 20802398 -134827722 - Lx3_Mus LINE L1 -8 7001 6518 3 743 4478 101 22 8 chr4 20802401 20803069 -134827051 + Lx3_Mus LINE L1 5853 6530 -479 3 743 247 296 109 36 chr4 20803142 20803279 -134826841 - ORR1E LTR MaLR -128 231 85 3 743 407 349 122 30 chr4 20803271 20803575 -134826545 + MLT1H1 LTR MaLR 220 551 -4 3 743 6911 202 35 4 chr4 20803743 20805131 -134824989 - Lx5 LINE L1 -3 7047 5643 3 743 2813 182 45 16 chr4 20805130 20805795 -134824325 + L1_Mur2 LINE L1 1637 2320 -3557 3 743 311 288 95 9 chr4 20805809 20805914 -134824206 + PB1D10 SINE Alu 3 116 -1 3 743 246 346 109 19 chr4 20806138 20806294 -134823826 - Kanga1b DNA Tc2 -436 343 174 3 743 259 314 0 0 chr4 20808115 20808201 -134821919 - ERVL-int LTR ERVL -1666 4091 4006 3 743 261 375 44 52 chr4 20808470 20808605 -134821515 + B4A SINE B4 11 144 -148 3 743 27 62 0 0 chr4 20809958 20810006 -134820114 + AT_rich Low_complexity Low_complexity 1 48 0 3 743 3320 33 5 5 chr4 20810475 20810869 -134819251 + MTA_Mm LTR MaLR 3 396 0 3 743 252 0 0 0 chr4 20812007 20812035 -134818085 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 743 956 127 0 21 chr4 20812035 20812170 -134817950 - B1_Mus1 SINE Alu -13 135 1 3 743 7788 39 17 0 chr4 20813273 20814218 -134815902 - L1Md_T LINE L1 0 6582 5622 3 743 21 71 0 0 chr4 20814392 20814434 -134815686 + AT_rich Low_complexity Low_complexity 1 42 0 3 743 28 61 0 0 chr4 20814569 20814618 -134815502 + AT_rich Low_complexity Low_complexity 1 49 0 3 743 7058 102 21 14 chr4 20814692 20815901 -134814219 + L1_Mus3 LINE L1 5423 6638 0 3 743 1254 275 46 6 chr4 20816004 20816355 -134813765 + Lx6 LINE L1 7081 7445 -15 3 743 393 176 0 0 chr4 20816704 20816778 -134813342 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 743 457 50 24 36 chr4 20816970 20817053 -134813067 + L1Md_F2 LINE L1 6488 6569 -13 3 743 766 252 130 38 chr4 20817229 20817255 -134812865 + RLTR11A LTR ERVK 207 232 -296 3 743 225 65 0 0 chr4 20817255 20817286 -134812834 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 743 766 252 130 38 chr4 20817286 20817552 -134812568 + RLTR11A LTR ERVK 233 526 -2 3 743 213 117 33 16 chr4 20817660 20817721 -134812399 + A-rich Low_complexity Low_complexity 2 63 0 4 743 25 0 0 0 chr4 20818158 20818183 -134811937 + AT_rich Low_complexity Low_complexity 1 25 0 4 743 921 294 171 3 chr4 20818434 20818755 -134811365 - MTEa LTR MaLR -2 377 3 4 743 31 0 0 0 chr4 20819547 20819578 -134810542 + AT_rich Low_complexity Low_complexity 1 31 0 4 743 271 149 0 21 chr4 20819663 20819711 -134810409 - MTC LTR MaLR -374 47 1 4 743 296 326 22 0 chr4 20819720 20819809 -134810311 + Lx8 LINE L1 7031 7121 -352 4 743 674 120 22 22 chr4 20819849 20820028 -134810092 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 743 263 235 0 0 chr4 20820030 20820098 -134810022 + GA-rich Low_complexity Low_complexity 1 68 0 4 743 926 153 0 11 chr4 20821886 20822064 -134808056 + CT-rich Low_complexity Low_complexity 3 178 0 4 743 432 0 0 0 chr4 20822066 20822114 -134808006 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 4 743 2643 212 100 68 chr4 20822116 20822968 -134807152 + RLTR13D6 LTR ERVK 4 929 0 4 743 1049 119 11 0 chr4 20822971 20823148 -134806972 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 743 216 182 0 0 chr4 20823162 20823206 -134806914 + CT-rich Low_complexity Low_complexity 6 49 0 4 743 303 237 10 0 chr4 20823206 20823303 -134806817 + (CTG)n Simple_repeat Simple_repeat 3 100 0 4 743 882 308 98 38 chr4 20823450 20823848 -134806272 + Lx8 LINE L1 6490 6915 -558 4 743 4923 47 19 0 chr4 20823848 20824442 -134805678 + RLTR1D LTR ERV1 1 605 0 4 743 882 308 98 38 chr4 20824442 20824542 -134805578 + Lx8 LINE L1 6916 7018 -455 4 743 895 317 55 34 chr4 20824537 20824955 -134805165 + Lx9 LINE L1 6843 7269 -375 4 743 6968 102 61 16 chr4 20825134 20826978 -134803142 + L1VL2 LINE L1 86 2029 -1586 4 743 1161 37 0 0 chr4 20827006 20827141 -134802979 - L1_Mus2 LINE L1 -279 6287 6153 4 743 2009 97 33 78 chr4 20827141 20827475 -134802645 + L1_Mus2 LINE L1 6248 6566 0 4 743 785 299 30 19 chr4 20827570 20828000 -134802120 - L1_Mur3 LINE L1 -1236 4644 4210 4 743 1213 223 60 14 chr4 20829420 20829773 -134800347 + MTD LTR MaLR 5 419 0 4 743 327 176 14 29 chr4 20830459 20830529 -134799591 - MTD LTR MaLR -1 418 350 4 743 436 231 13 0 chr4 20830981 20831137 -134798983 + (TG)n Simple_repeat Simple_repeat 1 158 0 4 743 641 280 60 0 chr4 20831167 20831317 -134798803 - RSINE1 SINE B4 -4 161 3 4 743 5054 155 3 6 chr4 20831849 20832732 -134797388 - Lx2 LINE L1 -616 5261 4381 4 743 5867 132 61 6 chr4 20832731 20833134 -134796986 + Lx2 LINE L1 5272 5703 -180 4 743 189 0 0 0 chr4 20833134 20833155 -134796965 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 743 5867 147 67 7 chr4 20833155 20834252 -134795868 + Lx2 LINE L1 5704 6980 -28 4 743 495 107 0 0 chr4 20834739 20834814 -134795306 + (CAATA)n Simple_repeat Simple_repeat 2 76 0 4 743 3153 57 5 0 chr4 20836832 20837233 -134792887 - L1_Mus1 LINE L1 0 6567 6165 4 743 4524 251 91 66 chr4 20837663 20838975 -134791145 - Lx5 LINE L1 -4 7046 5701 4 743 234 0 0 0 chr4 20838975 20839001 -134791119 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 743 4524 189 49 0 chr4 20839001 20839781 -134790339 - Lx5 LINE L1 -177 5700 4887 4 743 1249 253 30 34 chr4 20839782 20840275 -134789845 - RMER13B LTR ERVK 0 908 343 4 743 33 25 0 0 chr4 20840278 20840318 -134789802 + AT_rich Low_complexity Low_complexity 1 40 0 4 92 4799 109 40 67 chr4 20840347 20841152 -134788968 - L1_Mus2 LINE L1 -1 6565 5783 4 744 183 114 0 0 chr4 20841153 20841188 -134788932 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 744 37028 36 3 0 chr4 20841189 20847346 -134782774 - L1Md_T LINE L1 -1 6581 406 4 744 17166 126 6 2 chr4 20847348 20850192 -134779928 - L1_Mm LINE L1 -87 5796 2942 4 744 381 103 0 0 chr4 20850666 20850734 -134779386 + (T)n Simple_repeat Simple_repeat 1 68 0 4 744 1001 102 0 52 chr4 20850735 20850890 -134779230 - B1_Mm SINE Alu 0 147 1 4 744 180 111 0 0 chr4 20851289 20851316 -134778804 + (CTTTG)n Simple_repeat Simple_repeat 2 28 0 4 744 264 250 0 0 chr4 20851407 20851487 -134778633 + CT-rich Low_complexity Low_complexity 1 80 0 4 744 45 62 0 0 chr4 20851924 20852004 -134778116 + AT_rich Low_complexity Low_complexity 1 80 0 4 744 489 34 0 0 chr4 20852259 20852318 -134777802 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 744 201 333 0 14 chr4 20852697 20852767 -134777353 - L2 LINE L2 -534 2885 2817 4 744 7022 91 7 1 chr4 20852982 20854622 -134775498 + L1_Mus1 LINE L1 4913 6566 -1 4 744 837 224 35 0 chr4 20854628 20854798 -134775322 + MTC LTR MaLR 67 242 -179 4 744 325 310 82 0 chr4 20854798 20854969 -134775151 + L1MA5A LINE L1 5772 5956 -341 4 744 303 324 55 32 chr4 20855165 20855382 -134774738 + L1MA5A LINE L1 6073 6294 -6 4 744 467 311 54 24 chr4 20855660 20855828 -134774292 - MTE-int LTR MaLR -706 874 702 4 744 318 302 33 90 chr4 20855852 20856063 -134774057 - RLTR12B LTR ERVK -24 504 306 4 744 1486 211 35 76 chr4 20856125 20856494 -134773626 + ORR1B1 LTR MaLR 41 394 0 4 744 618 270 48 88 chr4 20856497 20856769 -134773351 - RLTR11A2 LTR ERVK -266 261 1 4 744 7972 258 79 66 chr4 20856769 20857584 -134772536 - MYSERV-int LTR ERVK 0 6550 5695 4 744 216 0 0 0 chr4 20857584 20857608 -134772512 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 744 7972 257 69 68 chr4 20857608 20858123 -134771997 - MYSERV-int LTR ERVK -856 5694 5212 4 744 441 0 0 0 chr4 20858123 20858172 -134771948 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 744 7972 258 79 66 chr4 20858172 20860795 -134769325 - MYSERV-int LTR ERVK -1339 5211 2545 4 744 7290 65 4 1 chr4 20860814 20861792 -134768328 - L1_Mus1 LINE L1 0 6567 5587 4 744 1729 61 0 4 chr4 20861796 20862027 -134768093 + L1_Mus1 LINE L1 5348 5577 -306 4 744 5101 266 54 30 chr4 20862027 20863980 -134766140 - MYSERV6-int LTR ERVK -6130 2829 820 4 744 2641 64 14 3 chr4 20863980 20864324 -134765796 + L1_Mus2 LINE L1 6218 6565 -1 4 744 5101 266 54 30 chr4 20864324 20864487 -134765633 - MYSERV6-int LTR ERVK -8140 819 662 4 744 1443 167 95 17 chr4 20865026 20865292 -134764828 + Lx5 LINE L1 940 1301 -5785 4 744 3495 15 5 0 chr4 20865292 20865686 -134764434 + MTA_Mm LTR MaLR 1 396 0 4 744 1443 177 40 17 chr4 20865686 20865948 -134764172 + Lx5 LINE L1 1302 1562 -4315 4 744 4455 4 0 24 chr4 20865948 20866453 -134763667 + MT2_Mm LTR ERVL 1 493 0 4 744 45277 15 6 0 chr4 20866453 20871779 -134758341 + MERVL-int LTR ERVL 1 5360 -125 4 744 390 167 46 35 chr4 20871779 20871866 -134758254 + ORR1A3-int LTR MaLR 553 640 -1323 4 744 302 0 0 0 chr4 20871866 20871904 -134758216 + MERVL-int LTR ERVL 5448 5485 0 4 744 4455 4 0 24 chr4 20871904 20872409 -134757711 + MT2_Mm LTR ERVL 1 493 0 4 744 2016 182 15 0 chr4 20872409 20872816 -134757304 + Lx5 LINE L1 1561 1973 -3907 4 744 1478 177 38 14 chr4 20872806 20873150 -134756970 + Lx5 LINE L1 5004 5355 -522 4 744 454 321 100 15 chr4 20873312 20873581 -134756539 + RMER20A LTR ERVK 132 423 -93 4 744 5601 228 39 22 chr4 20873690 20875336 -134754784 + Lx5 LINE L1 5368 7049 -1 4 744 33 43 0 0 chr4 20875409 20875456 -134754664 + AT_rich Low_complexity Low_complexity 1 47 0 4 744 24 91 0 0 chr4 20875559 20875625 -134754495 + AT_rich Low_complexity Low_complexity 1 66 0 4 744 411 21 0 0 chr4 20877420 20877468 -134752652 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 744 25 0 0 0 chr4 20877799 20877824 -134752296 + AT_rich Low_complexity Low_complexity 1 25 0 4 744 231 149 43 0 chr4 20878042 20878089 -134752031 - Lx8 LINE L1 -1568 5905 5857 4 744 219 127 53 35 chr4 20878160 20878217 -134751903 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 4 744 461 291 40 26 chr4 20878240 20878466 -134751654 - Lx7 LINE L1 -529 5774 5560 4 744 294 256 77 5 chr4 20878476 20878619 -134751501 + L1M2 LINE L1 4666 4809 -1334 4 744 802 193 7 20 chr4 20880448 20880596 -134749524 - B1_Mus1 SINE Alu 0 148 3 4 744 246 255 0 0 chr4 20881050 20881101 -134749019 - MER5A DNA MER1_type 0 189 139 4 744 326 354 81 81 chr4 20881099 20881468 -134748652 - ORR1D1 LTR MaLR -5 369 1 4 744 24 0 0 0 chr4 20882079 20882103 -134748017 + AT_rich Low_complexity Low_complexity 1 24 0 4 744 597 64 0 0 chr4 20882156 20882234 -134747886 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 744 522 46 0 0 chr4 20882365 20882430 -134747690 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 744 429 20 0 0 chr4 20882900 20882950 -134747170 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 744 24 53 0 0 chr4 20883032 20883070 -134747050 + AT_rich Low_complexity Low_complexity 1 38 0 4 744 2165 170 67 5 chr4 20883269 20883659 -134746461 - MTC LTR MaLR -7 414 1 4 744 526 229 70 77 chr4 20886527 20886552 -134743568 + B4 SINE B4 67 220 -71 4 744 1052 54 0 0 chr4 20886552 20886682 -134743438 + B1_Mus1 SINE Alu 13 142 -6 4 744 790 10 20 0 chr4 20886684 20886783 -134743337 + (TAAA)n Simple_repeat Simple_repeat 2 102 0 4 744 1813 217 28 53 chr4 20887244 20887600 -134742520 + Lx5 LINE L1 5420 5767 -113 4 744 3559 156 44 41 chr4 20887600 20888354 -134741766 + RMER6A LTR ERVK 1 756 0 4 744 1560 204 31 63 chr4 20888354 20888572 -134741548 + Lx5 LINE L1 5773 5987 -1063 4 744 1914 127 267 46 chr4 20888688 20889141 -134740979 + RLTR6_Mm LTR ERV1 37 589 -65 4 744 906 252 25 12 chr4 20889141 20889386 -134740734 + Lx6 LINE L1 5984 6231 -1229 4 744 862 299 37 34 chr4 20889684 20889982 -134740138 - Lx6 LINE L1 -26 7434 7136 4 744 868 278 105 33 chr4 20890045 20890749 -134739371 - L1MC LINE L1 -2928 3218 2464 4 744 192 77 0 0 chr4 20890942 20890968 -134739152 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 744 222 118 0 0 chr4 20890963 20890997 -134739123 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 744 650 297 51 23 chr4 20891027 20891241 -134738879 + B4 SINE B4 5 224 -68 4 744 209 128 21 0 chr4 20891241 20891288 -134738832 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 744 272 175 16 0 chr4 20891369 20891432 -134738688 + CT-rich Low_complexity Low_complexity 1 64 0 4 744 511 316 51 11 chr4 20891739 20891915 -134738205 - MTEb LTR MaLR -186 193 11 4 744 231 204 0 0 chr4 20892258 20892312 -134737808 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 744 445 368 73 23 chr4 20893020 20893279 -134736841 + MLT1D LTR MaLR 117 388 -117 4 744 499 336 22 44 chr4 20893325 20893552 -134736568 + MLT1D LTR MaLR 259 480 -25 4 744 430 309 115 46 chr4 20893934 20894190 -134735930 + MLT1A1 LTR MaLR 91 403 -5 4 744 555 312 46 67 chr4 20894357 20894829 -134735291 + RMER15 LTR ERVL 3 554 -21 4 744 351 0 0 0 chr4 20895533 20895572 -134734548 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 744 588 252 89 12 chr4 20895572 20895774 -134734346 + ORR1B2 LTR MaLR 2 256 -111 4 744 1124 264 153 59 chr4 20895722 20895775 -134734345 - MTE-int LTR MaLR -5 1575 1529 5 744 1678 169 11 84 chr4 20895775 20896130 -134733990 - ORR1A4 LTR MaLR 0 329 1 5 744 8007 162 77 68 chr4 20896130 20897841 -134732279 - ORR1A4-int LTR MaLR -186 1777 382 5 744 2372 201 95 11 chr4 20897841 20898380 -134731740 - RLTR31A_Mm LTR ERVK 0 584 1 5 744 8007 159 68 72 chr4 20898380 20898707 -134731413 - ORR1A4-int LTR MaLR -1582 381 1 5 744 1550 199 9 58 chr4 20898707 20899053 -134731067 - ORR1A4 LTR MaLR 0 329 1 5 744 490 226 0 19 chr4 20899053 20899161 -134730959 + ORR1B2 LTR MaLR 253 358 -9 4 744 423 0 0 0 chr4 20899161 20899208 -134730912 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 744 2194 120 69 20 chr4 20899219 20899609 -134730511 - RLTR9E LTR ERVK 0 409 1 5 744 516 40 0 38 chr4 20899609 20899688 -134730432 - ETnERV2-int LTR ERVK 0 7406 7331 5 744 1829 193 81 15 chr4 20899688 20900161 -134729959 - RLTR13D6 LTR ERVK -363 539 1 5 744 1443 141 16 8 chr4 20900172 20900422 -134729698 - ETnERV3-int LTR ERVK -28 5780 5529 5 744 314 111 0 60 chr4 20900435 20900502 -134729618 - ETnERV2-int LTR ERVK -1172 6072 6010 5 744 1207 144 78 168 chr4 20900598 20900931 -134729189 - ETnERV2-int LTR ERVK -977 6429 6127 5 744 3309 187 30 61 chr4 20900972 20901992 -134728128 - ETnERV2-int LTR ERVK -1759 3085 2356 5 744 3608 116 17 5 chr4 20901986 20902568 -134727552 - ETnERV2-int LTR ERVK -3376 4030 3442 5 744 4215 154 90 52 chr4 20902626 20903900 -134726220 - ETnERV2-int LTR ERVK -5308 2098 2 5 744 1783 138 110 50 chr4 20903902 20904284 -134725836 - RLTR9E LTR ERVK 0 409 5 5 744 180 0 0 0 chr4 20904286 20904306 -134725814 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 744 776 245 13 90 chr4 20904580 20904813 -134725307 - B3 SINE B2 -1 215 1 5 744 235 246 62 47 chr4 20905408 20905472 -134724648 - RLTR25A LTR ERVK -2 1101 1037 5 744 503 189 0 0 chr4 20905482 20905572 -134724548 + RLTR23 LTR ERV1 11 100 -330 5 744 744 274 71 64 chr4 20905654 20905950 -134724170 + RLTR23 LTR ERV1 133 430 0 5 744 608 263 39 107 chr4 20905950 20906123 -134723997 - RLTR25A LTR ERVK -58 970 799 5 744 366 23 0 0 chr4 20906123 20906166 -134723954 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 744 608 263 39 107 chr4 20906166 20906205 -134723915 - RLTR25A LTR ERVK -230 798 774 5 744 306 0 0 0 chr4 20906205 20906239 -134723881 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 5 744 608 263 39 107 chr4 20906239 20906257 -134723863 - RLTR25A LTR ERVK -255 773 756 5 744 230 154 21 188 chr4 20906261 20906357 -134723763 - RLTR25B LTR ERVK -207 821 742 5 744 383 175 22 48 chr4 20906380 20906500 -134723620 - RLTR25A LTR ERVK -521 582 390 5 744 5455 103 69 2 chr4 20906513 20907349 -134722771 - Lx3A LINE L1 -6 6975 6084 5 744 285 158 20 172 chr4 20907355 20907454 -134722666 - RLTR25B LTR ERVK -203 825 742 5 744 2115 111 22 11 chr4 20907482 20907838 -134722282 + Lx3A LINE L1 5729 6088 -893 5 744 2530 171 31 4 chr4 20907839 20908296 -134721824 - RLTR25A LTR ERVK -634 469 1 5 744 22 0 0 0 chr4 20909400 20909422 -134720698 + AT_rich Low_complexity Low_complexity 1 22 0 5 744 1392 106 66 29 chr4 20909422 20909665 -134720455 - L1Md_F2 LINE L1 -2 6580 6329 5 744 6886 18 0 0 chr4 20909673 20910798 -134719322 - L1Md_T LINE L1 -408 6174 5050 5 744 197 33 33 0 chr4 20911353 20911383 -134718737 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 744 1274 79 0 0 chr4 20912304 20912482 -134717638 - L1Md_F2 LINE L1 -592 5990 5813 5 744 4572 159 27 27 chr4 20912482 20913421 -134716699 - L1_Mm LINE L1 -1558 4325 3387 5 744 411 92 31 0 chr4 20913418 20913483 -134716637 - L1Md_F3 LINE L1 -478 6106 6040 5 744 7381 164 41 1 chr4 20913481 20915076 -134715044 + Lx4B LINE L1 5391 7053 -5 5 744 351 236 14 0 chr4 20915218 20915290 -134714830 - B3A SINE B2 -124 74 2 5 744 28 48 0 0 chr4 20916722 20916764 -134713356 + AT_rich Low_complexity Low_complexity 1 42 0 5 744 307 189 13 51 chr4 20916914 20916992 -134713128 - L1MA9 LINE L1 -180 6132 6058 5 744 723 42 0 0 chr4 20917560 20917655 -134712465 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 744 503 82 12 12 chr4 20918517 20918603 -134711517 - Lx2A LINE L1 0 7008 6923 5 744 704 105 9 0 chr4 20918836 20918941 -134711179 - B2_Mm1t SINE B2 -85 108 3 5 744 512 174 144 0 chr4 20919079 20919211 -134710909 + Lx LINE L1 6491 6641 -13 5 744 1731 80 8 0 chr4 20920412 20920650 -134709470 - L1_Mus1 LINE L1 0 6567 6328 5 744 1802 97 12 0 chr4 20920650 20920908 -134709212 + L1_Mm LINE L1 5540 5800 -83 5 744 537 242 103 19 chr4 20921467 20921623 -134708497 - MTD LTR MaLR -15 404 236 5 744 264 189 19 19 chr4 20921621 20921675 -134708445 - MTD LTR MaLR -330 54 1 5 744 394 289 121 24 chr4 20921759 20921883 -134708237 - MLT1H-int LTR MaLR -321 1088 953 5 744 236 369 29 19 chr4 20921929 20922034 -134708086 - PB1D7 SINE Alu -14 106 1 5 744 1143 81 0 0 chr4 20922040 20922188 -134707932 - B1_Mus1 SINE Alu 0 148 1 5 744 268 289 24 0 chr4 20923139 20923222 -134706898 + GA-rich Low_complexity Low_complexity 1 85 0 5 744 470 343 0 0 chr4 20923225 20923368 -134706752 + RSINE1 SINE B4 4 146 -19 5 744 768 246 164 42 chr4 20923773 20924385 -134705735 - RLTR40 LTR ERVK -53 764 16 5 744 603 293 20 20 chr4 20924407 20924557 -134705563 + RSINE1 SINE B4 11 160 -5 5 744 3328 63 0 2 chr4 20925200 20925613 -134704507 + L1_Mus1 LINE L1 6156 6567 0 5 744 419 192 10 42 chr4 20927007 20927124 -134702996 - MTE2a LTR MaLR 0 379 272 5 744 1439 206 12 0 chr4 20927786 20928112 -134702008 + Lx7 LINE L1 4948 5277 -603 5 744 5451 246 38 19 chr4 20928145 20928812 -134701308 + Lx7 LINE L1 5526 6206 -1490 5 744 432 0 0 0 chr4 20928812 20928860 -134701260 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 5 744 5451 262 41 28 chr4 20928860 20929970 -134700150 + Lx7 LINE L1 6207 7329 -367 5 744 183 80 0 0 chr4 20930055 20930080 -134700040 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 744 594 128 0 0 chr4 20930129 20930223 -134699897 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 5 744 1670 262 62 42 chr4 20930224 20931085 -134699035 - Lx6 LINE L1 -2 7458 6496 5 744 241 243 71 18 chr4 20931080 20931193 -134698927 + Lx7 LINE L1 7563 7681 -15 5 744 762 180 0 0 chr4 20931197 20931375 -134698745 + GA-rich Low_complexity Low_complexity 1 178 0 5 744 1257 68 0 0 chr4 20931376 20931597 -134698523 + (GGAA)n Simple_repeat Simple_repeat 1 221 0 5 744 1683 192 5 3 chr4 20931805 20932122 -134697998 + MTC LTR MaLR 1 331 -88 5 744 613 107 0 24 chr4 20933303 20933427 -134696693 + (TCTCTG)n Simple_repeat Simple_repeat 2 122 0 5 744 269 51 26 0 chr4 20933428 20933467 -134696653 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 744 2772 210 117 18 chr4 20934073 20934821 -134695299 - RMER1B Other Other -6 1060 176 5 744 4509 101 7 98 chr4 20934883 20935692 -134694428 - RMER17A LTR ERVK -15 736 1 5 744 302 315 28 9 chr4 20935692 20935801 -134694319 - RMER1A Other Other -905 125 15 5 744 1373 227 82 6 chr4 20935802 20936121 -134693999 - RMER1B Other Other -680 386 44 5 744 522 0 0 0 chr4 20936307 20936365 -134693755 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 744 418 241 0 35 chr4 20938568 20938654 -134691466 + B3 SINE B2 1 83 -133 5 744 937 331 139 11 chr4 20938662 20939229 -134690891 - Lx5 LINE L1 -190 6860 6221 5 744 10434 226 57 97 chr4 20939232 20940388 -134689732 - L1_Mur3 LINE L1 -355 5522 4275 5 744 378 0 0 0 chr4 20940388 20940430 -134689690 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 744 10434 226 57 97 chr4 20940430 20940861 -134689259 - L1_Mur3 LINE L1 -1603 4274 3847 5 744 585 199 118 81 chr4 20940861 20940919 -134689201 - B2_Mm2 SINE B2 -1 194 139 5 744 207 0 0 0 chr4 20940919 20940942 -134689178 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 744 585 199 118 81 chr4 20940942 20941069 -134689051 - B2_Mm2 SINE B2 -57 138 2 5 744 10434 226 57 97 chr4 20941069 20942691 -134687429 - L1_Mur3 LINE L1 -2031 3846 2289 5 744 8125 43 1 3 chr4 20942691 20943677 -134686443 + L1Md_F2 LINE L1 5587 6570 -12 5 744 3754 209 44 27 chr4 20943681 20943942 -134686178 - L1_Mur3 LINE L1 -3568 2312 2066 5 744 348 83 0 0 chr4 20943942 20943990 -134686130 + (TGG)n Simple_repeat Simple_repeat 3 50 0 5 744 3754 216 51 29 chr4 20943990 20944973 -134685147 - L1_Mur3 LINE L1 -3815 2065 1033 5 744 369 0 0 0 chr4 20944973 20945014 -134685106 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 744 841 248 50 9 chr4 20945014 20945223 -134684897 - L1_Mur3 LINE L1 -6630 1098 889 5 744 1621 294 83 24 chr4 20945682 20946296 -134683824 + Lx6 LINE L1 6809 7458 -2 5 744 485 287 137 11 chr4 20947208 20947398 -134682722 + B3 SINE B2 2 215 -1 5 744 354 328 86 0 chr4 20947508 20947636 -134682484 + MTE2a LTR MaLR 1 139 -240 5 744 257 318 97 39 chr4 20947636 20947662 -134682458 + MT2A LTR ERVL 1 163 -370 5 744 414 0 0 0 chr4 20947707 20947753 -134682367 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 744 33 66 0 0 chr4 20950057 20950118 -134680002 + AT_rich Low_complexity Low_complexity 1 61 0 5 744 445 216 198 0 chr4 20950190 20950306 -134679814 - B1_Mur2 SINE Alu -1 148 10 5 744 285 262 144 45 chr4 20950306 20950322 -134679798 - ID_B1 SINE B4 -2 222 78 5 744 262 0 0 50 chr4 20950325 20950365 -134679755 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 744 236 206 16 0 chr4 20950424 20950487 -134679633 + A-rich Low_complexity Low_complexity 2 65 0 5 744 455 316 67 62 chr4 20950670 20950879 -134679241 + RMER2 LTR ERV1 329 538 -29 5 744 364 235 176 24 chr4 20950900 20951070 -134679050 - Lx8 LINE L1 -21 7452 7257 5 744 597 322 53 10 chr4 20951158 20951459 -134678661 - Lx8 LINE L1 -347 7126 6813 5 744 3700 144 33 59 chr4 20951459 20952118 -134678002 - RLTR26 LTR ERVK 0 642 1 5 744 706 162 0 0 chr4 20952121 20952238 -134677882 - MERVK26-int LTR ERVK -1 6918 6802 5 744 1247 88 44 0 chr4 20952238 20952420 -134677700 + B2_Mm1t SINE B2 1 190 -3 5 744 384 22 0 0 chr4 20952420 20952465 -134677655 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 5 744 1232 116 0 0 chr4 20952466 20952647 -134677473 - MERVK26-int LTR ERVK -105 6814 6634 5 744 2474 30 0 10 chr4 20952653 20952955 -134677165 - RLTR13C2 LTR ERVK -509 299 1 5 744 5322 66 1 7 chr4 20954754 20955456 -134674664 + L1Md_F2 LINE L1 5885 6582 0 5 744 1898 262 37 0 chr4 20956146 20956630 -134673490 - Lx6 LINE L1 -4 7456 6955 5 744 524 250 194 0 chr4 20956650 20956794 -134673326 + B3 SINE B2 44 215 -1 5 744 431 127 0 0 chr4 20956825 20956888 -134673232 - Lx6 LINE L1 -584 6876 6814 5 744 494 191 92 7 chr4 20956907 20957049 -134673071 + Lx6 LINE L1 5689 5842 -1618 5 744 4809 38 3 2 chr4 20957341 20957917 -134672203 + L1Md_F2 LINE L1 5992 6568 -14 5 744 31131 72 3 1 chr4 20957928 20963017 -134667103 + L1Md_F2 LINE L1 484 5586 -297 5 744 7856 51 7 7 chr4 20963018 20964013 -134666107 + L1Md_F2 LINE L1 5588 6582 0 5 744 32 26 0 0 chr4 20964147 20964186 -134665934 + AT_rich Low_complexity Low_complexity 1 39 0 5 744 5347 179 174 70 chr4 20965290 20966467 -134663653 + Lx2B LINE L1 820 2196 -3690 5 744 547 186 27 48 chr4 20966467 20966485 -134663635 + ID_B1 SINE B4 80 222 -1 5 744 1057 23 0 0 chr4 20966485 20966613 -134663507 + B1_Mm SINE Alu 20 147 0 5 744 5347 179 174 70 chr4 20966614 20968023 -134662097 + Lx2B LINE L1 2197 3847 -2039 5 744 198 0 0 0 chr4 20968023 20968045 -134662075 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 744 5347 182 209 83 chr4 20968045 20968096 -134662024 + Lx2B LINE L1 3848 3912 -1974 5 744 7892 146 37 11 chr4 20968092 20969994 -134660126 + Lx2B LINE L1 5039 6999 -1 5 744 26 30 0 0 chr4 20970171 20970204 -134659916 + AT_rich Low_complexity Low_complexity 1 33 0 5 744 202 135 19 37 chr4 20970690 20970744 -134659376 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 5 744 545 202 19 0 chr4 20970753 20970857 -134659263 - B1_Mus2 SINE Alu 0 147 42 5 744 225 186 16 63 chr4 20970933 20970996 -134659124 - B1_Mus1 SINE Alu -88 60 1 5 11 189 94 0 0 chr4 20971517 20971549 -134658571 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 745 644 122 0 0 chr4 20973865 20973980 -134656140 - L1_Mus4 LINE L1 -2 6634 6520 6 745 3501 100 4 0 chr4 20973980 20974636 -134655484 - L1_Mus3 LINE L1 -550 6088 5428 6 745 1776 208 98 26 chr4 20975070 20975456 -134654664 + MTC LTR MaLR 1 414 -7 6 745 899 237 20 25 chr4 20975556 20975759 -134654361 - MTD LTR MaLR -215 204 3 6 745 270 267 139 16 chr4 20975916 20976160 -134653960 - L1MD3 LINE L1 -588 7407 7134 6 745 754 241 96 143 chr4 20977024 20977585 -134652535 + RMER6C LTR ERVK 1 535 -155 6 745 395 301 16 16 chr4 20977645 20977770 -134652350 - RLTR22_Mur LTR ERVK -134 1714 1590 6 745 250 209 129 43 chr4 20977787 20977857 -134652263 + LTR86A1 LTR ERVL 307 382 -131 6 745 1461 237 27 44 chr4 20977833 20978135 -134651985 - RLTR22_Mur LTR ERVK -1035 813 520 6 745 1314 58 0 0 chr4 20978135 20978306 -134651814 - L1Md_F2 LINE L1 -12 6570 6400 6 745 1461 237 27 44 chr4 20978306 20978409 -134651711 - RLTR22_Mur LTR ERVK -1329 519 415 6 745 367 242 36 79 chr4 20978427 20978566 -134651554 + RLTR23 LTR ERV1 294 426 -4 6 745 656 220 51 45 chr4 20978545 20978721 -134651399 + RMER6C LTR ERVK 512 688 -2 6 745 4806 94 73 3 chr4 20978723 20980067 -134650053 + L1VL2 LINE L1 232 1689 -1926 6 745 5904 145 44 10 chr4 20980067 20981173 -134648947 + Lx LINE L1 5510 6653 -1 6 745 727 262 118 79 chr4 20981961 20982276 -134647844 + RLTR11A LTR ERVK 7 333 -195 6 745 1545 226 32 56 chr4 20982282 20982745 -134647375 + MYSERV16_I-int LTR ERVK 640 1091 -1235 6 745 432 127 0 12 chr4 20982759 20982839 -134647281 - Lx2A LINE L1 -6 7002 6924 6 745 8466 144 9 7 chr4 20982839 20984377 -134645743 - Lx2A LINE L1 -40 6968 5462 6 745 742 288 150 0 chr4 20985007 20985240 -134644880 + MTEa LTR MaLR 109 376 -3 6 745 1625 167 21 14 chr4 20985249 20985540 -134644580 + RMER6A LTR ERVK 38 330 -426 6 745 477 0 0 0 chr4 20985580 20985633 -134644487 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 745 991 306 65 72 chr4 20985633 20985809 -134644311 + MTE-int LTR MaLR 113 289 -1291 6 745 2157 115 16 7 chr4 20985809 20986115 -134644005 + RLTR27 LTR ERVK 1 309 0 6 745 991 306 65 72 chr4 20986115 20986396 -134643724 + MTE-int LTR MaLR 290 567 -1013 6 745 227 209 126 42 chr4 20986484 20986579 -134643541 + LTR16D1 LTR ERVL 561 663 -12 6 745 649 260 26 13 chr4 20986971 20987197 -134642923 + L1_Mur3 LINE L1 892 1120 -6608 6 745 2050 194 52 67 chr4 20987215 20987890 -134642230 + L1_Mur3 LINE L1 2004 2668 -3212 6 745 412 178 22 0 chr4 20987894 20987984 -134642136 + L1_Mur1 LINE L1 3033 3124 -2762 6 745 522 0 0 0 chr4 20988049 20988107 -134642013 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 745 180 0 0 0 chr4 20988107 20988126 -134641994 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 745 28 48 0 0 chr4 20988467 20988509 -134641611 + AT_rich Low_complexity Low_complexity 1 42 0 6 745 517 132 85 0 chr4 20989629 20989735 -134640385 - L1_Mur3 LINE L1 -1808 4072 3958 6 745 2353 206 59 41 chr4 20989742 20990457 -134639663 - L1_Mur3 LINE L1 -2503 3377 2650 6 745 4810 164 44 7 chr4 20990458 20991480 -134638640 + L1_Mur2 LINE L1 379 1303 -4577 6 745 435 253 0 24 chr4 20991606 20991715 -134638405 - B1_Mur4 SINE Alu -2 118 13 6 745 1013 167 65 25 chr4 20991734 20991979 -134638141 + Lx9 LINE L1 6789 7043 -601 6 745 6187 212 33 14 chr4 20992036 20994002 -134636118 - Lx5 LINE L1 -2 7048 5044 6 745 2217 148 2 2 chr4 20994005 20994405 -134635715 + L1_Mur2 LINE L1 3202 3601 -2276 6 745 1427 157 6 34 chr4 20994408 20994732 -134635388 + L1_Mur2 LINE L1 4521 4835 -1042 6 745 200 189 0 26 chr4 20994735 20994773 -134635347 + polypurine Low_complexity Low_complexity 3 39 0 6 745 1409 169 81 18 chr4 20994791 20995074 -134635046 - RLTR10E LTR ERVK -10 301 1 6 745 1325 62 0 11 chr4 20995081 20995262 -134634858 + (GGA)n Simple_repeat Simple_repeat 2 180 0 6 745 933 217 45 0 chr4 20995272 20995493 -134634627 + L1_Mur2 LINE L1 4831 5061 -816 6 745 1461 249 46 74 chr4 20995476 20996082 -134634038 + Lx9 LINE L1 7055 7643 -1 6 745 4810 94 8 6 chr4 20997098 20997807 -134632313 + RLTR22_Mus LTR ERVK 1 711 -1097 6 745 6724 57 4 9 chr4 20997813 20998718 -134631402 - L1Md_F2 LINE L1 -13 6569 5669 6 745 4119 110 42 199 chr4 20998718 20999784 -134630336 + RLTR22_Mur LTR ERVK 687 1585 -263 6 745 990 128 5 88 chr4 20999784 20999999 -134630121 - L1Md_F2 LINE L1 -2 6580 6384 6 745 6048 61 1 4 chr4 21000000 21000973 -134629147 - L1Md_F2 LINE L1 -200 6382 5413 1 745 2322 72 15 33 chr4 21000975 21001308 -134628812 + IAPLTR2b LTR ERVK 1 327 0 2 745 51386 30 13 21 chr4 21001309 21007831 -134622289 + IAPEz-int LTR ERVK 9 6479 -2 2 745 2385 59 15 33 chr4 21007833 21008166 -134621954 + IAPLTR2b LTR ERVK 1 327 0 2 745 28082 90 5 1 chr4 21008166 21010094 -134620026 - L1Md_F2 LINE L1 -467 5416 3478 1 745 192 40 0 0 chr4 21010094 21010119 -134620001 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 3 745 28082 94 4 1 chr4 21010119 21013217 -134616903 - L1Md_F2 LINE L1 -2406 3477 371 1 745 1606 109 44 4 chr4 21013223 21013471 -134616649 + RLTR22_Mur LTR ERVK 1587 1844 -4 4 745 2879 127 2 27 chr4 21013587 21014033 -134616087 - Lx2 LINE L1 -2 6995 6561 5 745 424 233 12 2 chr4 21014144 21014247 -134615873 + ORR1D1 LTR MaLR 1 103 -267 6 745 477 0 0 0 chr4 21014275 21014328 -134615792 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 745 240 296 12 0 chr4 21014398 21014479 -134615641 + MTEb LTR MaLR 294 375 -4 8 745 2382 132 50 0 chr4 21014953 21015356 -134614764 + MusHAL1 LINE L1 82 504 -2850 9 745 12768 167 90 16 chr4 21015351 21018191 -134611929 + L1_Mm LINE L1 2572 5622 -261 1 745 6039 136 25 9 chr4 21018637 21019663 -134610457 + Lx LINE L1 5612 6654 0 1 745 369 0 0 0 chr4 21020026 21020067 -134610053 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 745 3257 24 39 0 chr4 21020218 21020599 -134609521 + MTA_Mm LTR MaLR 1 396 0 1 745 9044 38 3 2 chr4 21020599 21021694 -134608426 + MTA_Mm-int LTR MaLR 1 1096 -2 1 745 3257 24 39 0 chr4 21021696 21022077 -134608043 + MTA_Mm LTR MaLR 1 396 0 1 745 350 358 56 6 chr4 21023268 21023428 -134606692 - MIRb SINE MIR 0 268 101 1 745 4809 49 2 2 chr4 21023690 21024278 -134605842 + L1Md_F2 LINE L1 5983 6570 -12 1 745 326 211 18 0 chr4 21025159 21025216 -134604904 + PB1D7 SINE Alu 8 65 -55 1 745 227 230 15 90 chr4 21025172 21025239 -134604881 - YREP_Mm Unknown Unknown -1516 296 235 1 745 1814 153 56 12 chr4 21025735 21026059 -134604061 - Lx3B LINE L1 0 6973 6636 1 745 7208 137 99 71 chr4 21026066 21027761 -134602359 - L1_Mur1 LINE L1 -213 5673 3932 1 745 265 23 21 64 chr4 21027761 21027808 -134602312 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 745 30596 48 76 2 chr4 21027808 21033526 -134596594 - L1Md_F2 LINE L1 -34 6548 415 2 745 273 306 89 10 chr4 21033524 21033828 -134596292 - L1_Mur3 LINE L1 -2392 3488 3161 2 745 290 128 92 0 chr4 21033831 21033940 -134596180 + (TA)n Simple_repeat Simple_repeat 2 120 0 2 745 354 217 209 7 chr4 21033940 21034079 -134596041 - L1M2 LINE L1 -2968 3175 3009 2 745 334 354 110 18 chr4 21034093 21034257 -134595863 - B4A SINE B4 -3 289 111 2 745 5188 79 7 3 chr4 21034257 21035005 -134595115 + L1Md_T LINE L1 4557 5307 -576 2 745 5206 11 0 2 chr4 21034988 21035612 -134594508 + L1Md_T LINE L1 4964 5586 -297 2 745 8316 40 1 0 chr4 21035612 21036607 -134593513 + L1Md_T LINE L1 5587 6582 0 2 745 291 28 0 0 chr4 21036697 21036733 -134593387 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 745 1846 311 77 26 chr4 21036833 21038083 -134592037 + L1M2 LINE L1 3690 5002 -1141 2 745 309 218 96 43 chr4 21038138 21038253 -134591867 + L1M2 LINE L1 5132 5252 -891 2 745 264 309 84 19 chr4 21038288 21038478 -134591642 + L1M2 LINE L1 5320 5518 -779 2 745 2490 187 26 16 chr4 21039069 21039559 -134590561 + Lx2B LINE L1 6503 6997 -3 2 745 522 0 0 0 chr4 21040696 21040754 -134589366 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 745 394 267 44 0 chr4 21041535 21041625 -134588495 + PB1D10 SINE Alu 16 109 -40 3 745 309 328 17 8 chr4 21041540 21041657 -134588463 + ID_B1 SINE B4 102 219 -5 3 745 504 0 0 0 chr4 21041712 21041768 -134588352 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 745 231 299 14 27 chr4 21042517 21042665 -134587455 + L1MC LINE L1 2689 2834 -3312 3 745 412 219 6 32 chr4 21042667 21042823 -134587297 + RMER17C LTR ERVK 123 274 -136 3 745 318 318 83 49 chr4 21042938 21043203 -134586917 + B4A SINE B4 3 276 -16 3 745 300 120 0 0 chr4 21043259 21043309 -134586811 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 745 352 261 77 82 chr4 21043317 21043513 -134586607 + L1M5 LINE L1 3146 3340 -2806 3 745 1292 52 0 8 chr4 21043707 21043960 -134586160 + (TTC)n Simple_repeat Simple_repeat 1 251 0 3 745 240 35 0 0 chr4 21043964 21043993 -134586127 + (TCC)n Simple_repeat Simple_repeat 1 29 0 4 745 2293 206 52 8 chr4 21044041 21044564 -134585556 - RMER1B Other Other -11 1055 392 4 745 2077 155 12 3 chr4 21044785 21045128 -134584992 + ORR1A1 LTR MaLR 1 346 0 4 745 234 267 71 64 chr4 21045223 21045363 -134584757 + L1MC LINE L1 3877 4017 -2129 3 745 573 204 124 55 chr4 21046636 21046729 -134583391 - RLTR20C LTR ERVK 0 578 474 4 745 207 0 0 0 chr4 21046729 21046752 -134583368 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 745 549 0 0 0 chr4 21046752 21046812 -134583308 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 745 573 204 124 55 chr4 21046812 21046862 -134583258 - RLTR20C LTR ERVK -105 473 425 4 745 1153 210 68 64 chr4 21046861 21047172 -134582948 - RLTR20C LTR ERVK -222 312 1 4 745 225 0 0 0 chr4 21047408 21047433 -134582687 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 745 351 0 0 0 chr4 21047436 21047475 -134582645 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 745 238 182 23 0 chr4 21047501 21047545 -134582575 + GA-rich Low_complexity Low_complexity 2 46 0 4 745 198 0 0 0 chr4 21047777 21047799 -134582321 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 4 745 377 200 0 45 chr4 21049105 21049194 -134580926 + RMER19C LTR ERVK 1 85 -526 5 745 10782 106 55 24 chr4 21049377 21052224 -134577896 - L1VL2 LINE L1 -626 2989 60 5 745 1875 250 52 108 chr4 21052224 21052293 -134577827 + RMER19C LTR ERVK 49 117 -494 5 745 4230 105 6 13 chr4 21052293 21052918 -134577202 + L1_Mus3 LINE L1 6012 6632 -6 5 745 1875 250 52 108 chr4 21052918 21053443 -134576677 + RMER19C LTR ERVK 118 610 -1 5 745 930 235 217 39 chr4 21053440 21053931 -134576189 + RLTR13D6 LTR ERVK 1 475 -380 5 745 14223 30 0 0 chr4 21053937 21056384 -134573736 - L1Md_A LINE L1 0 6582 4136 5 745 6287 41 6 17 chr4 21056385 21057213 -134572907 - IAPEz-int LTR ERVK -12 6469 5651 5 745 2429 88 3 3 chr4 21057206 21057548 -134572572 - IAPEz-int LTR ERVK -4781 1700 1359 5 745 3602 65 2 18 chr4 21057548 21058051 -134572069 - IAPEz-int LTR ERVK -5819 662 168 5 745 250 302 0 0 chr4 21058051 21058104 -134572016 - RLTR27 LTR ERVK -34 275 223 5 745 961 107 10 88 chr4 21058104 21058298 -134571822 - IAPEz-int LTR ERVK -6286 195 17 5 745 2413 122 93 38 chr4 21058336 21058786 -134571334 - IAPLTR2_Mm LTR ERVK 0 475 1 5 745 23283 34 0 10 chr4 21058786 21062507 -134567613 - L1Md_A LINE L1 -1733 4150 474 5 745 2518 117 63 18 chr4 21062511 21062956 -134567164 + RLTR13D1 LTR ERVK 342 806 0 5 745 5404 63 8 43 chr4 21063424 21064172 -134565948 - L1_Mus2 LINE L1 0 6566 5845 5 745 404 355 169 36 chr4 21064174 21064481 -134565639 + MLT1G3 LTR MaLR 211 558 -37 6 745 635 120 8 0 chr4 21065451 21065568 -134564552 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 6 745 1034 333 9 103 chr4 21066372 21066952 -134563168 - MT2A LTR ERVL -8 525 1 6 745 570 82 0 0 chr4 21067335 21067420 -134562700 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 745 843 266 27 0 chr4 21067452 21067636 -134562484 - B3 SINE B2 -27 189 1 6 745 1594 296 40 28 chr4 21068491 21069262 -134560858 - Lx6 LINE L1 -18 7032 6455 6 745 824 160 20 13 chr4 21069285 21069437 -134560683 + RLTR20B1 LTR ERVK 1 153 -407 6 745 3974 91 0 0 chr4 21069437 21069998 -134560122 + L1_Mus3 LINE L1 5841 6401 -237 6 745 514 149 9 0 chr4 21069994 21070101 -134560019 + L1_Mus3 LINE L1 6529 6636 -2 6 745 546 223 53 23 chr4 21070104 21070237 -134559883 + RLTR20B1 LTR ERVK 168 304 -256 6 745 28537 106 23 2 chr4 21070237 21075617 -134554503 + L1Md_F2 LINE L1 175 5586 -297 6 745 7452 78 6 4 chr4 21075617 21076611 -134553509 + L1Md_F2 LINE L1 5587 6582 0 6 745 1341 174 79 23 chr4 21076613 21076786 -134553334 + RLTR20B1 LTR ERVK 280 455 -108 6 745 546 29 0 0 chr4 21076786 21076854 -134553266 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 745 1341 174 79 23 chr4 21076854 21076945 -134553175 + RLTR20B1 LTR ERVK 456 558 -5 6 745 3895 197 8 81 chr4 21076947 21077525 -134552595 - Lx6 LINE L1 -1310 6150 5609 6 745 235 235 39 0 chr4 21077525 21077576 -134552544 - RMER13B LTR ERVK -472 436 384 7 745 3895 197 8 81 chr4 21077576 21077598 -134552522 - Lx6 LINE L1 -1310 5608 5587 6 745 5039 94 20 0 chr4 21077598 21078303 -134551817 - L1_Mus1 LINE L1 -3 6564 5846 7 745 3895 150 4 137 chr4 21078303 21078879 -134551241 - Lx6 LINE L1 -269 5614 5045 6 745 5675 71 16 16 chr4 21078881 21078986 -134551134 + L1_Mus2 LINE L1 5797 5901 -665 7 745 2997 87 12 5 chr4 21078986 21079404 -134550716 + BGLII LTR ERVK 1 421 0 7 745 5675 71 16 16 chr4 21079404 21080068 -134550052 + L1_Mus2 LINE L1 5902 6566 0 7 745 353 192 27 0 chr4 21080070 21080143 -134549977 + MTE2a LTR MaLR 305 379 0 7 745 1079 142 22 5 chr4 21080582 21080766 -134549354 - B2_Mm2 SINE B2 -7 188 2 7 745 5472 119 40 7 chr4 21080960 21082278 -134547842 - L1_Mus3 LINE L1 -5 6649 5259 7 745 5288 147 29 23 chr4 21082259 21083992 -134546128 - L1VL1 LINE L1 -1743 1955 210 7 745 1250 290 29 8 chr4 21084192 21084567 -134545553 + Lx8 LINE L1 6287 6669 -804 7 745 490 311 0 20 chr4 21086256 21086407 -134543713 + B1_Mur3 SINE Alu 2 149 0 7 745 364 333 92 33 chr4 21086597 21086749 -134543371 - B4A SINE B4 -122 170 10 8 745 1376 223 91 24 chr4 21087016 21087389 -134542731 - Lx5 LINE L1 -7 7043 6646 8 745 274 293 61 25 chr4 21087416 21087612 -134542508 - L1M4c LINE L1 -908 5736 5534 8 745 445 305 100 26 chr4 21087652 21088002 -134542118 - L1M4c LINE L1 -1907 4737 4362 8 745 203 0 37 0 chr4 21088074 21088101 -134542019 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 8 745 1624 158 13 3 chr4 21088135 21088453 -134541667 - L1_Mur2 LINE L1 -471 5406 5086 8 745 6028 131 45 2 chr4 21088464 21089589 -134540531 + Lx LINE L1 5477 6649 -5 8 745 229 239 38 86 chr4 21089603 21089708 -134540412 - L1M4c LINE L1 -2409 4235 4136 8 745 1250 278 58 28 chr4 21089735 21090098 -134540022 - MTEb LTR MaLR 0 379 6 8 745 255 283 67 0 chr4 21090099 21090255 -134539865 - L1M4c LINE L1 -2580 4058 3878 8 745 885 290 72 78 chr4 21090477 21091255 -134538865 - L1M4c LINE L1 -4611 2035 1256 8 745 460 255 183 37 chr4 21091299 21091572 -134538548 + Lx9 LINE L1 7284 7596 -48 8 745 35 0 0 0 chr4 21091572 21091607 -134538513 + AT_rich Low_complexity Low_complexity 1 35 0 8 745 7676 34 4 1 chr4 21091607 21092576 -134537544 - L1Md_F3 LINE L1 -15 6569 5598 8 745 31 0 0 0 chr4 21092576 21092607 -134537513 + AT_rich Low_complexity Low_complexity 1 31 0 9 745 939 259 70 93 chr4 21092783 21093170 -134536950 - MTEa LTR MaLR 0 379 2 9 745 486 306 21 7 chr4 21093414 21093559 -134536561 + B3 SINE B2 70 216 0 9 745 30 0 0 0 chr4 21093668 21093698 -134536422 + AT_rich Low_complexity Low_complexity 1 30 0 9 745 444 326 48 28 chr4 21093747 21093892 -134536228 - RSINE1 SINE B4 -5 160 13 9 745 441 0 0 0 chr4 21094104 21094153 -134535967 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 745 326 365 107 32 chr4 21095172 21095546 -134534574 - MER82 DNA MER2_type -251 402 1 9 745 399 73 0 0 chr4 21095759 21095814 -134534306 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 745 908 173 12 6 chr4 21096602 21096771 -134533349 + Lx5 LINE L1 6208 6377 -673 9 745 915 218 19 27 chr4 21096778 21097037 -134533083 + Lx5 LINE L1 6794 7050 0 9 745 417 293 96 22 chr4 21097046 21097360 -134532760 + L1MCc LINE L1 80 416 -6007 9 745 234 343 57 14 chr4 21097891 21098101 -134532019 + L1MCc LINE L1 1082 1300 -5123 9 745 23 33 0 0 chr4 21098214 21098244 -134531876 + AT_rich Low_complexity Low_complexity 1 30 0 1 745 22 35 0 0 chr4 21098301 21098330 -134531790 + AT_rich Low_complexity Low_complexity 1 29 0 1 745 1010 282 28 25 chr4 21098340 21098667 -134531453 + Lx8 LINE L1 6227 6554 -919 1 745 709 109 0 0 chr4 21098813 21098914 -134531206 - B1_Mur4 SINE Alu 0 150 50 1 745 976 286 41 16 chr4 21098934 21099250 -134530870 + Lx8 LINE L1 6798 7121 -352 1 745 385 259 12 0 chr4 21099273 21099358 -134530762 - B3A SINE B2 -109 89 4 1 745 28 29 0 0 chr4 21099473 21099508 -134530612 + AT_rich Low_complexity Low_complexity 1 35 0 1 745 473 273 8 32 chr4 21100345 21100470 -134529650 + MER5A1 DNA MER1_type 18 139 -27 1 745 21 0 0 0 chr4 21102080 21102101 -134528019 + AT_rich Low_complexity Low_complexity 1 21 0 1 746 234 0 0 0 chr4 21102614 21102640 -134527480 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 746 21 57 0 0 chr4 21102640 21102675 -134527445 + AT_rich Low_complexity Low_complexity 1 35 0 1 746 294 86 27 41 chr4 21102755 21102828 -134527292 + T-rich Low_complexity Low_complexity 6 77 0 1 746 1038 78 7 0 chr4 21102828 21102970 -134527150 - B1_Mus1 SINE Alu 0 148 6 1 746 447 190 0 121 chr4 21102862 21102994 -134527126 - MT2B LTR ERVL -337 264 149 1 746 357 269 132 52 chr4 21103605 21103701 -134526419 + L1M5 LINE L1 5255 5352 -810 1 746 552 68 0 0 chr4 21103701 21103774 -134526346 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 1 746 357 269 132 52 chr4 21103774 21103889 -134526231 + L1M5 LINE L1 5353 5483 -679 1 746 12782 174 43 13 chr4 21103893 21106695 -134523425 - L1Md_F2 LINE L1 -651 5232 2348 1 746 7199 71 3 1 chr4 21106682 21108154 -134521966 - L1Md_F2 LINE L1 0 6582 5146 1 746 30087 52 2 15 chr4 21108151 21114512 -134515608 - L1Md_A LINE L1 0 6582 307 1 746 12441 68 1 1 chr4 21114514 21116224 -134513896 - L1Md_F2 LINE L1 -726 5157 3449 1 746 5043 141 159 11 chr4 21116221 21118044 -134512076 - L1Md_F LINE L1 -1512 2305 210 1 746 589 153 0 0 chr4 21118043 21118154 -134511966 - MusHAL1 LINE L1 -2477 235 125 1 746 1602 163 53 0 chr4 21118150 21118487 -134511633 - L1VL4 LINE L1 -5438 864 510 1 746 213 140 0 23 chr4 21118862 21118906 -134511214 + T-rich Low_complexity Low_complexity 2 44 0 1 746 315 252 50 20 chr4 21118906 21119007 -134511113 - L1M2 LINE L1 -932 5211 5108 1 746 265 196 61 20 chr4 21119010 21119109 -134511011 + L1M3 LINE L1 4296 4398 -1745 1 746 392 274 124 45 chr4 21119145 21119359 -134510761 + L1M3 LINE L1 4455 4712 -1428 1 746 6490 62 4 2 chr4 21119507 21120314 -134509806 + RLTR13C2 LTR ERVK 1 808 0 1 746 1073 90 14 0 chr4 21121263 21121408 -134508712 - B1_Mm SINE Alu 0 147 1 1 746 1870 297 35 72 chr4 21121565 21122580 -134507540 + RMER1C Other Other 81 1178 -164 1 746 1586 141 269 119 chr4 21122582 21123178 -134506942 - RMER6C LTR ERVK -2 688 4 1 746 250 203 17 0 chr4 21123652 21123711 -134506409 + L1MB7 LINE L1 6058 6117 -67 1 746 47 53 0 0 chr4 21123712 21123787 -134506333 + AT_rich Low_complexity Low_complexity 1 75 0 1 746 742 238 134 5 chr4 21123794 21123980 -134506140 + B3 SINE B2 6 215 -1 1 746 3080 14 0 3 chr4 21124013 21124360 -134505760 + ORR1A0 LTR MaLR 1 346 0 1 746 13999 55 7 1 chr4 21124360 21126142 -134503978 + ORR1A0-int LTR MaLR 1 1792 0 1 746 3106 14 0 0 chr4 21126142 21126488 -134503632 + ORR1A0 LTR MaLR 1 346 0 1 746 21 36 0 0 chr4 21127269 21127297 -134502823 + AT_rich Low_complexity Low_complexity 1 28 0 1 746 353 381 16 0 chr4 21127421 21127547 -134502573 + B3A SINE B2 15 142 -56 1 746 432 97 0 0 chr4 21127640 21127702 -134502418 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 746 669 281 54 19 chr4 21127714 21127726 -134502394 + RMER1C Other Other 912 925 -417 1 746 867 28 0 0 chr4 21127726 21127832 -134502288 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 1 746 669 281 54 19 chr4 21127832 21128077 -134502043 + RMER1C Other Other 926 1178 -164 1 746 1004 143 12 6 chr4 21128079 21128248 -134501872 - RMER6C LTR ERVK -2 688 519 1 746 402 57 0 0 chr4 21128279 21128332 -134501788 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 746 709 272 160 52 chr4 21128404 21128485 -134501635 - MLT2C1 LTR ERVL -51 346 241 1 746 492 280 35 0 chr4 21128485 21128628 -134501492 - B1_Mur3 SINE Alu 0 149 2 1 746 709 272 160 52 chr4 21128628 21128852 -134501268 - MLT2C1 LTR ERVL -157 240 8 1 746 417 225 50 0 chr4 21129028 21129148 -134500972 + L1MC4 LINE L1 7452 7577 -465 1 746 697 204 143 59 chr4 21129754 21129903 -134500217 + URR1A DNA MER1_type 7 183 -43 1 746 3794 124 38 2 chr4 21129903 21130484 -134499636 + Lx3B LINE L1 6371 6972 -1 1 746 697 204 143 59 chr4 21130484 21130537 -134499583 + URR1A DNA MER1_type 184 226 0 1 746 1090 305 37 10 chr4 21131985 21132280 -134497840 - MTE2b LTR MaLR -24 355 53 1 746 355 287 0 0 chr4 21132281 21132368 -134497752 - MTE2b LTR MaLR -287 92 6 1 746 876 252 44 16 chr4 21132503 21132734 -134497386 + ORR1D2 LTR MaLR 1 220 -150 1 746 291 227 131 20 chr4 21133039 21133138 -134496982 - MIR SINE MIR -33 229 120 1 746 8356 30 13 2 chr4 21133202 21134476 -134495644 + L1Md_A LINE L1 1 1089 -5635 1 746 2356 15 0 0 chr4 21134476 21134744 -134495376 + L1Md_A LINE L1 6315 6582 0 1 746 35316 51 1 6 chr4 21135045 21140969 -134489151 - L1Md_F2 LINE L1 0 6582 694 1 746 3754 218 17 4 chr4 21140979 21142059 -134488061 - Lx7 LINE L1 -1141 6555 5453 1 746 980 299 55 92 chr4 21142293 21142504 -134487616 + MTD LTR MaLR 1 194 -225 1 746 742 211 194 0 chr4 21142504 21142684 -134487436 + B3 SINE B2 2 216 0 1 746 980 299 55 92 chr4 21142684 21142906 -134487214 + MTD LTR MaLR 195 418 -1 1 746 3304 38 13 0 chr4 21143106 21143497 -134486623 + MTA_Mm LTR MaLR 1 396 0 1 746 8723 58 2 5 chr4 21143497 21144598 -134485522 + MTA_Mm-int LTR MaLR 1 1098 0 1 746 3275 53 2 0 chr4 21144598 21144993 -134485127 + MTA_Mm LTR MaLR 1 396 0 1 746 21 57 0 0 chr4 21145647 21145682 -134484438 + AT_rich Low_complexity Low_complexity 1 35 0 1 746 996 90 0 6 chr4 21147053 21147210 -134482910 + L1_Mus4 LINE L1 6480 6635 -1 1 746 634 316 76 91 chr4 21148003 21148278 -134481842 + B4A SINE B4 22 292 0 1 746 239 227 19 85 chr4 21149131 21149237 -134480883 + L1MD LINE L1 4961 5059 -1087 1 746 1507 43 0 0 chr4 21150101 21150286 -134479834 - L1Md_T LINE L1 -350 6232 6048 1 746 3234 6 0 0 chr4 21150286 21150646 -134479474 + L1Md_T LINE L1 6223 6582 0 1 746 1007 240 99 0 chr4 21150897 21151201 -134478919 + Lx9 LINE L1 7301 7634 -10 1 746 966 112 0 7 chr4 21151201 21151336 -134478784 + B1_Mus1 SINE Alu 15 148 0 1 746 22 0 0 0 chr4 21151351 21151373 -134478747 + AT_rich Low_complexity Low_complexity 1 22 0 1 746 540 220 38 30 chr4 21153338 21153461 -134476659 + B1_Mus2 SINE Alu 1 124 -23 1 746 243 79 0 0 chr4 21153461 21153499 -134476621 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1 746 209 374 89 13 chr4 21153659 21153816 -134476304 - L2c LINE L2 -187 3200 3032 1 746 593 281 5 77 chr4 21154063 21154271 -134475849 - RLTR20D LTR ERVK 0 568 376 1 746 6807 63 10 3 chr4 21154271 21155464 -134474656 - L1_Mus1 LINE L1 -78 6489 5289 1 746 2544 202 14 30 chr4 21155483 21155984 -134474136 - RLTR20D LTR ERVK -75 493 1 1 746 235 359 0 45 chr4 21157046 21157113 -134473007 - RSINE1 SINE B4 -13 152 89 1 746 401 252 15 13 chr4 21157403 21157514 -134472606 - B1_Mus2 SINE Alu 0 149 43 1 746 395 235 23 23 chr4 21158049 21158136 -134471984 - RSINE1 SINE B4 -76 89 3 1 746 27 73 0 0 chr4 21158253 21158308 -134471812 + AT_rich Low_complexity Low_complexity 1 55 0 1 746 198 227 0 0 chr4 21158625 21158700 -134471420 + T-rich Low_complexity Low_complexity 1 75 0 1 746 656 315 110 7 chr4 21159916 21160188 -134469932 - RMER15 LTR ERVL -4 571 272 1 746 1520 248 88 10 chr4 21160218 21160605 -134469515 + MTD LTR MaLR 3 419 0 1 746 388 299 9 9 chr4 21160615 21160723 -134469397 - Lx8 LINE L1 -814 6659 6552 1 746 317 236 30 61 chr4 21160735 21160750 -134469370 - Lx8 LINE L1 -999 6474 6465 1 746 1690 175 29 112 chr4 21160750 21161162 -134468958 + ORR1C1 LTR MaLR 1 378 0 1 746 317 236 30 61 chr4 21161162 21161245 -134468875 - Lx8 LINE L1 -1009 6464 6379 1 746 29187 113 19 8 chr4 21161474 21167736 -134462384 + L1_Mus1 LINE L1 226 6564 -3 1 746 1104 82 0 26 chr4 21167800 21167812 -134462308 - B1_Mm SINE Alu 0 147 139 1 746 207 0 0 0 chr4 21167812 21167835 -134462285 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 746 1104 82 0 26 chr4 21167835 21167973 -134462147 - B1_Mm SINE Alu -9 138 1 1 746 1059 233 20 16 chr4 21168360 21168604 -134461516 - ORR1B2 LTR MaLR -69 298 54 1 746 7812 42 4 3 chr4 21168607 21169903 -134460217 - L1Md_F2 LINE L1 -1 6581 5288 1 746 16188 28 0 0 chr4 21169902 21172589 -134457531 - L1Md_A LINE L1 0 6582 3895 1 746 2165 76 0 0 chr4 21172589 21172891 -134457229 - L1_Mm LINE L1 -581 5302 5001 1 746 8139 61 12 2 chr4 21172888 21174009 -134456111 + L1_Mm LINE L1 3846 4978 -905 1 746 328 293 50 14 chr4 21174009 21174128 -134455992 - ORR1C1 LTR MaLR -277 117 2 1 746 3881 201 54 16 chr4 21174129 21175030 -134455090 - ORR1C1-int LTR MaLR 0 1509 574 1 746 380 360 35 16 chr4 21175034 21175314 -134454806 - Lx8 LINE L1 -1030 6614 6226 1 746 1016 330 84 32 chr4 21175399 21176015 -134454105 + Lx9 LINE L1 6789 7436 -208 1 746 2609 243 26 57 chr4 21176153 21176855 -134453265 - Lx6 LINE L1 -324 7136 6457 1 746 1252 310 48 9 chr4 21176847 21177286 -134452834 - Lx8 LINE L1 -717 6756 6301 1 746 363 23 0 0 chr4 21177449 21177493 -134452627 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 746 245 270 13 39 chr4 21178173 21178250 -134451870 - B4 SINE B4 -11 281 207 1 746 1275 209 169 78 chr4 21178253 21178678 -134451442 + MT2A LTR ERVL 1 464 -69 1 746 457 336 130 27 chr4 21178660 21178883 -134451237 - B4 SINE B4 -46 246 1 1 746 1391 215 8 74 chr4 21179143 21179509 -134450611 - RLTR31_Mur LTR ERVK -211 342 1 1 746 593 61 0 12 chr4 21180298 21180381 -134449739 + (TCTCCC)n Simple_repeat Simple_repeat 1 82 0 1 746 398 267 187 6 chr4 21180447 21180666 -134449454 - Lx9 LINE L1 -349 7295 6888 1 746 391 48 32 0 chr4 21180680 21180742 -134449378 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 1 746 223 90 0 95 chr4 21180769 21180843 -134449277 + T-rich Low_complexity Low_complexity 4 70 0 1 746 378 0 0 0 chr4 21180973 21181015 -134449105 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 746 441 0 0 0 chr4 21181015 21181063 -134449057 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 746 35625 19 2 7 chr4 21181223 21186436 -134443684 + L1Md_T LINE L1 407 5586 -297 1 746 7802 54 16 2 chr4 21186436 21187418 -134442702 + L1Md_T LINE L1 5587 6582 0 1 746 2184 185 31 11 chr4 21187576 21188034 -134442086 - MERVL_2A-int LTR ERVL -4178 1583 1117 2 746 403 191 286 0 chr4 21188035 21188140 -134441980 - RMER19C LTR ERVK 0 611 477 2 746 760 75 56 0 chr4 21188140 21188247 -134441873 + L1_Mus2 LINE L1 6137 6249 -317 2 746 358 42 0 0 chr4 21188249 21188297 -134441823 + L1_Mus2 LINE L1 6507 6554 -12 2 746 22 0 0 0 chr4 21188297 21188319 -134441801 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 1498 216 170 31 chr4 21188319 21188743 -134441377 - RMER19C LTR ERVK -128 483 1 2 746 3521 195 42 24 chr4 21188748 21189780 -134440340 - MERVL_2A-int LTR ERVL -4521 964 3 2 746 1310 230 7 7 chr4 21189849 21189873 -134440247 + RLTR28 LTR ERVL 1 24 -500 2 746 2285 44 27 3 chr4 21189873 21190171 -134439949 + L1Md_F2 LINE L1 6277 6581 -1 2 746 1310 230 7 7 chr4 21190171 21190448 -134439672 + RLTR28 LTR ERVL 25 301 -223 2 746 7827 49 0 5 chr4 21190450 21192146 -134437974 - L1Md_F2 LINE L1 -2 6580 4893 2 746 1059 180 18 18 chr4 21192146 21192372 -134437748 + RLTR28 LTR ERVL 296 521 -3 2 746 599 0 14 0 chr4 21192431 21192502 -134437618 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 2 746 687 270 49 22 chr4 21192513 21192759 -134437361 - MT2B LTR ERVL -57 544 162 2 746 1025 186 68 5 chr4 21192769 21192974 -134437146 + URR1B DNA MER1_type 8 225 0 2 746 394 331 36 83 chr4 21193030 21193072 -134437048 - MTE2b LTR MaLR -219 160 1 2 746 501 182 23 0 chr4 21193072 21193198 -134436922 - MT2B LTR ERVL -402 131 1 2 746 34 0 0 0 chr4 21194103 21194137 -134435983 + AT_rich Low_complexity Low_complexity 1 34 0 2 746 242 365 44 69 chr4 21194166 21194179 -134435941 - MT2B LTR ERVL -294 307 236 2 746 399 281 97 45 chr4 21194179 21194313 -134435807 - B1F1 SINE Alu -8 141 1 2 746 242 365 44 69 chr4 21194313 21194325 -134435795 - MT2B LTR ERVL -294 235 153 2 746 588 273 60 30 chr4 21195405 21195571 -134434549 + B4A SINE B4 116 286 -6 2 746 401 100 99 14 chr4 21195624 21195695 -134434425 + HAL1-3A_ME LINE L1 1976 2052 -806 2 746 280 284 62 0 chr4 21196853 21196934 -134433186 - ID_B1 SINE B4 -1 223 138 2 746 213 94 0 0 chr4 21198703 21198735 -134431385 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 746 244 256 0 35 chr4 21199819 21199904 -134430216 + Lx7 LINE L1 7555 7636 -60 2 746 6006 123 12 18 chr4 21200117 21201075 -134429045 - Lx3C LINE L1 -2 6974 6022 2 746 4024 105 5 5 chr4 21201075 21201822 -134428298 + Lx3B LINE L1 5271 6015 -958 2 746 236 220 20 0 chr4 21202013 21202063 -134428057 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 746 286 102 111 63 chr4 21202474 21202537 -134427583 - MTD LTR MaLR 0 419 354 2 746 1713 209 53 19 chr4 21202538 21202913 -134427207 - MTD LTR MaLR -29 390 3 2 746 1892 62 66 0 chr4 21203150 21203409 -134426711 + L1_Mus1 LINE L1 6292 6567 0 2 746 191 32 65 0 chr4 21203487 21203518 -134426602 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 2 746 1071 93 0 0 chr4 21204232 21204371 -134425749 + B1_Mus1 SINE Alu 1 139 -9 2 746 1233 57 0 0 chr4 21204371 21204529 -134425591 + (GAAA)n Simple_repeat Simple_repeat 2 159 0 2 746 585 0 0 0 chr4 21204800 21204865 -134425255 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 746 201 143 0 0 chr4 21204867 21204902 -134425218 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 746 3057 109 76 6 chr4 21204980 21205505 -134424615 - Lx3C LINE L1 -1103 5906 5339 2 746 5095 148 120 16 chr4 21205505 21206546 -134423574 + Lx4A LINE L1 5910 7058 0 2 746 561 274 196 12 chr4 21207175 21207376 -134422744 - B4 SINE B4 -6 286 44 2 746 573 86 0 0 chr4 21207376 21207469 -134422651 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 746 561 274 196 12 chr4 21207469 21207507 -134422613 - B4 SINE B4 -249 43 4 2 746 282 56 0 0 chr4 21207546 21207582 -134422538 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 746 36182 30 0 0 chr4 21208410 21215124 -134414996 - L1Md_T LINE L1 0 6585 1 2 746 276 125 0 45 chr4 21216602 21216669 -134413451 + (AAATG)n Simple_repeat Simple_repeat 2 65 0 2 746 508 187 80 0 chr4 21216838 21216960 -134413160 + Lx4A LINE L1 6775 6949 -109 2 746 198 0 0 0 chr4 21216978 21217000 -134413120 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2 746 1086 291 142 29 chr4 21217414 21218201 -134411919 + L1MA5 LINE L1 5313 6192 -108 2 746 589 251 276 30 chr4 21218201 21218358 -134411762 + MTE2a LTR MaLR 1 192 -187 2 746 516 16 0 0 chr4 21218358 21218419 -134411701 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 746 589 251 276 30 chr4 21218419 21218565 -134411555 + MTE2a LTR MaLR 193 379 0 2 746 1086 291 142 29 chr4 21218565 21218580 -134411540 + L1MA5 LINE L1 6193 6206 -94 2 746 9477 72 119 6 chr4 21218580 21220066 -134410054 + L1Md_F2 LINE L1 3933 5586 -297 2 746 7283 80 8 6 chr4 21220066 21221058 -134409062 + L1Md_F2 LINE L1 5587 6580 -2 2 746 285 228 54 11 chr4 21221093 21221186 -134408934 + L1MA5 LINE L1 6192 6288 -12 2 746 420 287 94 20 chr4 21221198 21221347 -134408773 + L1MA6 LINE L1 5948 6108 -192 2 746 351 0 0 0 chr4 21221347 21221386 -134408734 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 746 420 287 94 20 chr4 21221386 21221535 -134408585 + L1MA6 LINE L1 6109 6268 -32 2 746 537 258 8 15 chr4 21221589 21221723 -134408397 + MTEb LTR MaLR 244 376 -3 2 746 21 0 0 0 chr4 21222103 21222124 -134407996 + AT_rich Low_complexity Low_complexity 1 21 0 2 746 6677 41 14 0 chr4 21222648 21223445 -134406675 - RLTR13C2 LTR ERVK 0 808 1 2 746 543 92 0 0 chr4 21223985 21224072 -134406048 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 746 543 101 0 0 chr4 21224069 21224148 -134405972 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2 746 583 223 144 31 chr4 21225678 21225872 -134404248 - B3 SINE B2 0 216 1 2 746 763 289 108 36 chr4 21227017 21227322 -134402798 - ORR1E LTR MaLR -32 327 1 2 746 1242 262 25 22 chr4 21227786 21228153 -134401967 - ORR1D2 LTR MaLR -2 368 1 2 746 536 272 50 39 chr4 21228291 21228471 -134401649 + B3A SINE B2 1 182 -16 2 746 372 186 177 2 chr4 21228908 21228997 -134401123 + B3 SINE B2 1 93 -105 2 746 6120 36 0 0 chr4 21229970 21230694 -134399426 - L1Md_T LINE L1 -1 6581 5858 2 746 528 16 0 0 chr4 21230786 21230847 -134399273 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 746 222 329 24 12 chr4 21230851 21230934 -134399186 - PB1D10 SINE Alu -27 90 7 2 746 658 311 33 88 chr4 21231352 21231592 -134398528 - B4A SINE B4 -13 279 53 2 746 5248 128 25 13 chr4 21232171 21233360 -134396760 - Lx3B LINE L1 -476 6497 5297 2 93 2724 128 31 22 chr4 21233361 21233808 -134396312 + Lx3B LINE L1 6519 6969 -4 2 747 24 53 0 0 chr4 21233816 21233854 -134396266 + AT_rich Low_complexity Low_complexity 1 38 0 2 747 1372 245 81 32 chr4 21233926 21234272 -134395848 + ORR1D2 LTR MaLR 8 370 0 2 747 3612 281 61 71 chr4 21234276 21235487 -134394633 + ORR1D2-int LTR MaLR 5 1196 -174 2 747 183 42 0 0 chr4 21235487 21235511 -134394609 + (TTGTG)n Simple_repeat Simple_repeat 2 25 0 2 747 3612 281 61 71 chr4 21235511 21235650 -134394470 + ORR1D2-int LTR MaLR 1197 1342 -28 2 747 922 320 63 39 chr4 21235665 21236000 -134394120 + ORR1D2 LTR MaLR 5 347 -12 2 747 1119 84 0 0 chr4 21236075 21236253 -134393867 + (GA)n Simple_repeat Simple_repeat 2 179 0 2 747 597 28 0 0 chr4 21236628 21236699 -134393421 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 747 238 277 100 6 chr4 21236801 21236961 -134393159 - Lx6 LINE L1 0 7460 7286 2 747 229 247 192 0 chr4 21237272 21237345 -134392775 - ORR1E LTR MaLR -222 137 51 2 747 1236 184 13 5 chr4 21237449 21237673 -134392447 + URR1A DNA MER1_type 1 226 0 2 747 1077 67 7 0 chr4 21237847 21237982 -134392138 + B1_Mm SINE Alu 2 137 -10 2 747 479 60 0 15 chr4 21238099 21238167 -134391953 + (TTTTC)n Simple_repeat Simple_repeat 4 70 0 2 747 345 223 61 94 chr4 21238170 21238383 -134391737 - RMER17C LTR ERVK -136 274 69 2 747 456 51 0 0 chr4 21239094 21239153 -134390967 + (TGG)n Simple_repeat Simple_repeat 1 59 0 2 747 2589 83 50 13 chr4 21239173 21239550 -134390570 + MTA_Mm LTR MaLR 1 391 -5 2 747 33680 47 0 3 chr4 21239567 21244787 -134385333 + L1Md_T LINE L1 288 5589 -297 2 747 8419 36 0 0 chr4 21244787 21245783 -134384337 + L1Md_T LINE L1 5590 6585 0 2 747 6911 93 29 71 chr4 21245790 21246936 -134383184 + MTA_Mm-int LTR MaLR 1 1098 0 2 747 3092 54 13 3 chr4 21246936 21247328 -134382792 + MTA_Mm LTR MaLR 1 396 0 2 747 255 276 0 26 chr4 21247398 21247476 -134382644 + Kanga1c DNA Tc2 6 81 -648 2 747 1262 297 25 14 chr4 21247923 21248278 -134381842 + ORR1E LTR MaLR 1 359 0 2 747 189 281 17 17 chr4 21248543 21248601 -134381519 + MIRc SINE MIR 105 162 -106 2 747 257 211 0 19 chr4 21248786 21248839 -134381281 + C-rich Low_complexity Low_complexity 3 54 0 2 747 311 156 0 30 chr4 21248841 21248907 -134381213 + CT-rich Low_complexity Low_complexity 2 65 0 2 747 23 0 0 0 chr4 21249728 21249751 -134380369 + AT_rich Low_complexity Low_complexity 1 23 0 2 747 4813 233 76 19 chr4 21250420 21251762 -134378358 - Lx5 LINE L1 0 7050 5632 2 747 552 118 9 29 chr4 21251772 21251877 -134378243 + L1_Mur2 LINE L1 4846 4948 -929 2 747 3672 159 253 9 chr4 21251888 21252793 -134377327 - Lx5 LINE L1 -255 5622 4497 2 747 426 206 36 18 chr4 21252768 21252878 -134377242 - L1M2 LINE L1 -816 5484 5373 2 747 263 222 14 27 chr4 21253309 21253383 -134376737 - L1MD1 LINE L1 -117 6125 6053 2 747 303 325 52 17 chr4 21253495 21253611 -134376509 + L1M4 LINE L1 4844 4963 -1183 2 747 252 160 0 0 chr4 21253613 21253663 -134376457 - MT2A LTR ERVL 0 533 484 2 747 1399 206 74 60 chr4 21253738 21254164 -134375956 - MT2A LTR ERVL -33 568 1 2 747 284 300 70 69 chr4 21254190 21254653 -134375467 + L1M4 LINE L1 5092 5558 -620 2 747 1524 146 15 7 chr4 21255069 21255339 -134374781 + Lx2 LINE L1 6717 6988 -9 2 747 808 10 0 19 chr4 21255564 21255667 -134374453 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 747 1373 245 54 130 chr4 21256191 21256747 -134373373 + RMER1B Other Other 1 517 -549 2 747 1605 265 272 6 chr4 21256759 21257396 -134372724 + RMER1A Other Other 3 808 -222 2 747 327 209 58 11 chr4 21257404 21257491 -134372629 + RMER1B Other Other 967 1057 -9 2 747 648 212 73 10 chr4 21257499 21257704 -134372416 + Lx9 LINE L1 7423 7640 -4 2 747 290 276 100 96 chr4 21257858 21258015 -134372105 - L1MD LINE L1 -1243 4903 4748 2 747 573 15 0 0 chr4 21258015 21258081 -134372039 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 2 747 290 276 100 96 chr4 21258081 21258120 -134372000 - L1MD LINE L1 -1399 4747 4715 2 747 231 114 0 0 chr4 21258120 21258155 -134371965 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 747 290 276 100 96 chr4 21258155 21258198 -134371922 - L1MD LINE L1 -1432 4714 4678 2 747 564 187 208 16 chr4 21258198 21258323 -134371797 + B1_Mur3 SINE Alu 1 149 0 2 747 290 276 100 96 chr4 21258323 21258643 -134371477 - L1MD LINE L1 -1469 4677 4340 2 747 242 61 0 0 chr4 21259137 21259170 -134370950 + Lx5 LINE L1 7015 7047 -3 2 747 1240 297 65 43 chr4 21260150 21260643 -134369477 + RMER5 LTR ERV1 10 513 -21 2 747 1314 186 29 53 chr4 21260910 21261251 -134368869 - Lx7 LINE L1 0 7696 7364 2 747 588 84 0 0 chr4 21261269 21261352 -134368768 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 747 30351 101 16 4 chr4 21261459 21263794 -134366326 - L1Md_F2 LINE L1 -1 6581 4210 2 747 384 22 0 0 chr4 21263794 21263839 -134366281 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 747 30351 88 14 1 chr4 21263839 21267780 -134362340 - L1Md_F2 LINE L1 -1674 4209 217 2 747 1461 53 32 0 chr4 21267803 21267990 -134362130 + B2_Mm2 SINE B2 1 193 -2 3 747 3249 248 63 4 chr4 21267992 21268837 -134361283 - Lx7 LINE L1 -441 7255 6361 2 747 591 257 27 27 chr4 21268856 21269040 -134361080 - Lx7 LINE L1 -7142 586 403 2 747 1006 200 100 4 chr4 21269040 21269271 -134360849 - RLTR40 LTR ERVK -553 264 12 3 747 270 0 0 0 chr4 21269766 21269796 -134360324 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3 747 408 258 144 11 chr4 21271052 21271240 -134358880 + L1MC1 LINE L1 5552 5764 -569 3 747 549 316 17 0 chr4 21271454 21271631 -134358489 + Lx8 LINE L1 7146 7325 -148 3 747 234 280 24 149 chr4 21271600 21271768 -134358352 + RMER1C Other Other 1167 1313 -29 3 747 1239 269 77 18 chr4 21271805 21272245 -134357875 + RMER5 LTR ERV1 69 534 0 3 747 279 180 16 0 chr4 21272592 21272653 -134357467 - RMER5 LTR ERV1 -143 391 330 3 747 503 261 113 0 chr4 21272950 21273180 -134356940 + L1MC1 LINE L1 5770 6025 -308 3 747 2483 209 135 24 chr4 21273217 21274152 -134355968 + L1_Mur3 LINE L1 56 1106 -6622 3 747 951 109 0 0 chr4 21274152 21274299 -134355821 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3 747 1163 79 0 6 chr4 21274300 21274465 -134355655 + (GGAGA)n Simple_repeat Simple_repeat 3 166 0 3 747 2030 201 28 32 chr4 21274465 21274664 -134355456 + L1_Mur3 LINE L1 1107 1295 -6433 3 747 1273 191 13 19 chr4 21274644 21274959 -134355161 + L1_Mur3 LINE L1 1455 1767 -4113 3 747 410 167 13 0 chr4 21274957 21275035 -134355085 - L1_Mm LINE L1 -711 5172 5094 3 747 3077 46 0 0 chr4 21275017 21275407 -134354713 + L1Md_F2 LINE L1 5197 5586 -297 3 747 7634 61 7 10 chr4 21275407 21276406 -134353714 + L1Md_F2 LINE L1 5587 6582 0 3 747 698 192 7 0 chr4 21276420 21276571 -134353549 + L1_Mur3 LINE L1 4284 4435 -1445 3 747 1012 178 25 5 chr4 21276564 21276767 -134353353 + L1_Mur3 LINE L1 5392 5598 -282 3 747 426 39 0 0 chr4 21276767 21276819 -134353301 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 747 531 0 0 0 chr4 21276888 21276947 -134353173 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 747 2142 241 39 132 chr4 21276952 21277470 -134352650 - RLTR25B LTR ERVK -253 775 319 3 747 270 0 0 0 chr4 21277470 21277500 -134352620 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 747 573 118 0 11 chr4 21277500 21277594 -134352526 - Lx3A LINE L1 -14 6967 6875 3 747 2142 241 39 132 chr4 21277594 21277929 -134352191 - RLTR25B LTR ERVK -710 318 2 3 747 5121 246 55 11 chr4 21277929 21279146 -134350974 + Lx6 LINE L1 6180 7449 -11 3 747 414 326 62 22 chr4 21279472 21279651 -134350469 - MIR SINE MIR -22 240 55 3 747 25 0 0 0 chr4 21281483 21281508 -134348612 + AT_rich Low_complexity Low_complexity 1 25 0 3 747 915 263 0 5 chr4 21282123 21282310 -134347810 + B3 SINE B2 3 188 -28 3 747 294 73 0 0 chr4 21282310 21282351 -134347769 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 747 237 88 0 0 chr4 21282885 21282919 -134347201 - MTD LTR MaLR -5 414 381 3 747 2283 173 61 114 chr4 21282921 21282956 -134347164 + RMER4B LTR ERVK 1 47 -538 3 747 240 35 0 0 chr4 21282956 21282985 -134347135 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 747 2283 173 61 114 chr4 21282985 21283555 -134346565 + RMER4B LTR ERVK 48 573 -12 3 747 1660 239 16 21 chr4 21283567 21283947 -134346173 - MTD LTR MaLR -35 384 7 3 747 844 200 14 0 chr4 21284650 21284795 -134345325 - B1_Mur2 SINE Alu -2 147 1 3 747 390 272 0 0 chr4 21285775 21285856 -134344264 + B1F SINE Alu 18 98 -51 3 747 269 154 0 44 chr4 21285875 21285943 -134344177 + GA-rich Low_complexity Low_complexity 4 68 0 3 747 707 87 10 0 chr4 21285945 21286049 -134344071 + (GGGA)n Simple_repeat Simple_repeat 3 107 0 3 747 369 0 0 0 chr4 21287600 21287641 -134342479 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 747 408 20 0 0 chr4 21287641 21287689 -134342431 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 747 831 67 0 0 chr4 21287928 21288047 -134342073 + (TG)n Simple_repeat Simple_repeat 2 120 0 3 747 3549 31 10 0 chr4 21289317 21289709 -134340411 - MTA_Mm LTR MaLR 0 396 1 3 747 405 238 0 23 chr4 21289709 21289795 -134340325 + B4A SINE B4 207 290 -2 3 747 482 93 12 0 chr4 21289802 21289888 -134340232 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 747 415 237 86 26 chr4 21289990 21290107 -134340013 - B1F SINE Alu -15 134 11 3 747 930 33 8 8 chr4 21290165 21290287 -134339833 + L1Md_T LINE L1 6460 6581 -1 3 747 3187 70 0 0 chr4 21290364 21290752 -134339368 + L1Md_A LINE L1 6195 6582 0 3 747 672 55 0 11 chr4 21290860 21290951 -134339169 + B1_Mus2 SINE Alu 58 147 0 3 747 328 35 0 115 chr4 21290954 21291084 -134339036 + A-rich Low_complexity Low_complexity 1 115 0 3 747 216 0 0 0 chr4 21291128 21291152 -134338968 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 747 1438 256 74 30 chr4 21291329 21291764 -134338356 - Lx9 LINE L1 -461 7183 6730 3 747 227 237 21 31 chr4 21292458 21292554 -134337566 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 3 747 29 47 0 0 chr4 21292943 21292986 -134337134 + AT_rich Low_complexity Low_complexity 1 43 0 3 747 2016 108 46 0 chr4 21293224 21293529 -134336591 + ORR1A2 LTR MaLR 1 319 -8 3 747 1771 302 41 11 chr4 21293532 21294323 -134335797 - Lx5 LINE L1 -20 7030 6455 3 747 861 314 109 12 chr4 21294323 21294736 -134335384 + Lx8 LINE L1 6927 7379 -94 3 747 296 136 91 0 chr4 21294737 21294803 -134335317 + GA-rich Low_complexity Low_complexity 3 74 0 3 747 1287 84 0 0 chr4 21294803 21294981 -134335139 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 747 618 109 0 0 chr4 21294981 21295073 -134335047 + (GAAA)n Simple_repeat Simple_repeat 4 95 0 3 747 215 211 0 0 chr4 21295073 21295111 -134335009 + polypurine Low_complexity Low_complexity 2 39 0 3 747 4884 74 0 7 chr4 21295912 21296498 -134333622 - MT2B2 LTR ERVL 0 584 3 3 747 22 0 0 0 chr4 21296544 21296566 -134333554 + AT_rich Low_complexity Low_complexity 1 22 0 3 747 198 0 0 0 chr4 21297039 21297061 -134333059 + (A)n Simple_repeat Simple_repeat 1 22 0 3 747 26598 57 29 4 chr4 21297084 21301159 -134328961 + L1Md_F LINE L1 272 4427 -1456 3 747 36264 47 1 3 chr4 21301156 21306599 -134323521 + L1Md_T LINE L1 66 5589 -297 3 747 8953 37 0 0 chr4 21306599 21307595 -134322525 + L1Md_T LINE L1 5590 6585 0 3 747 7559 30 1 9 chr4 21307596 21308499 -134321621 + L1Md_F LINE L1 4412 5307 -576 3 747 39209 19 0 4 chr4 21308489 21315728 -134314392 + L1Md_A LINE L1 1 5586 -297 3 747 9644 2 0 0 chr4 21315728 21316724 -134313396 + L1Md_A LINE L1 5587 6582 0 3 747 2646 7 0 3 chr4 21316724 21317019 -134313101 + L1Md_T LINE L1 5293 5586 -297 3 747 8539 54 1 0 chr4 21317019 21318014 -134312106 + L1Md_T LINE L1 5587 6582 0 3 747 800 262 75 33 chr4 21318629 21318870 -134311250 + Lx8 LINE L1 6335 6585 -888 3 747 1381 310 94 30 chr4 21319008 21319606 -134310514 + Lx8 LINE L1 6585 7220 -253 3 747 3778 213 65 29 chr4 21321517 21323023 -134307097 - Lx7 LINE L1 -1290 6406 4834 3 747 5219 180 68 32 chr4 21323024 21324375 -134305745 + Lx4B LINE L1 5588 6997 -3 3 747 784 206 251 65 chr4 21324387 21324700 -134305420 + Lx4B LINE L1 6612 6951 -107 3 747 28 0 0 0 chr4 21325512 21325540 -134304580 + AT_rich Low_complexity Low_complexity 1 28 0 3 747 1550 249 48 3 chr4 21326063 21326398 -134303722 - MTD LTR MaLR -67 352 3 3 747 437 294 45 7 chr4 21326399 21326553 -134303567 + RSINE1 SINE B4 6 165 0 3 747 204 125 0 0 chr4 21326553 21326585 -134303535 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 747 37437 42 3 29 chr4 21326678 21332403 -134297717 + L1Md_T LINE L1 26 5586 -297 3 747 9012 33 0 1 chr4 21332403 21333400 -134296720 + L1Md_T LINE L1 5587 6582 0 3 747 21 0 0 0 chr4 21333992 21334013 -134296107 + AT_rich Low_complexity Low_complexity 1 21 0 3 747 332 213 52 76 chr4 21335123 21335223 -134294897 + ORR1D1 LTR MaLR 1 92 -302 3 747 542 274 88 7 chr4 21335277 21335424 -134294696 - MTD LTR MaLR -65 354 196 3 747 4640 56 19 34 chr4 21335502 21336129 -134293991 - L1Md_F2 LINE L1 0 6582 5965 3 747 668 273 15 39 chr4 21336136 21336342 -134293778 - MTD LTR MaLR -218 201 1 3 747 312 301 48 81 chr4 21337188 21337398 -134292722 + L1M4 LINE L1 2115 2317 -3829 3 747 318 26 0 0 chr4 21337455 21337494 -134292626 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 747 350 261 132 75 chr4 21337567 21337852 -134292268 + L1M4 LINE L1 5188 5499 -679 3 747 313 243 106 7 chr4 21337878 21338019 -134292101 + L1M4 LINE L1 5637 5791 -383 3 747 403 294 109 0 chr4 21338169 21338288 -134291832 + B1F2 SINE Alu 1 132 -17 3 747 504 333 12 62 chr4 21338457 21338574 -134291546 + B3A SINE B2 5 118 -80 3 747 906 253 157 25 chr4 21338574 21338898 -134291222 + ORR1D2 LTR MaLR 1 367 -3 3 747 504 333 12 62 chr4 21338898 21338940 -134291180 + B3A SINE B2 119 156 -42 3 747 513 47 0 0 chr4 21338942 21339006 -134291114 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 747 308 336 75 8 chr4 21339054 21339174 -134290946 + B4 SINE B4 7 134 -158 3 747 1078 226 79 109 chr4 21339616 21339984 -134290136 - MTEb LTR MaLR -22 357 1 3 747 1148 101 0 0 chr4 21340069 21340217 -134289903 + B1_Mus1 SINE Alu 1 148 0 3 747 1036 281 12 16 chr4 21340454 21340700 -134289420 + B4 SINE B4 43 287 -5 3 747 298 308 0 0 chr4 21341344 21341409 -134288711 + ID4_ SINE ID 2 66 -17 3 747 202 244 0 0 chr4 21341560 21341605 -134288515 + A-rich Low_complexity Low_complexity 1 45 0 3 747 242 317 3 0 chr4 21341614 21341687 -134288433 + ID4 SINE ID 6 79 -73 3 747 351 0 0 0 chr4 21341825 21341864 -134288256 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 747 252 231 0 0 chr4 21341865 21341930 -134288190 - RMER1B Other Other -12 1054 990 3 747 1759 117 49 0 chr4 21341941 21342207 -134287913 + ORR1A4 LTR MaLR 43 321 -8 3 747 599 278 59 0 chr4 21342333 21342502 -134287618 - RMER1B Other Other -726 340 162 3 747 591 269 202 8 chr4 21342511 21342773 -134287347 - RMER1B Other Other -689 377 65 3 747 1071 222 128 36 chr4 21342836 21343140 -134286980 - IAPEY3_LTR LTR ERVK 0 332 1 3 747 291 64 18 0 chr4 21343566 21343622 -134286498 - L1_Mus2 LINE L1 -1 6583 6519 3 747 1020 70 39 0 chr4 21343852 21344008 -134286112 + L1Md_F2 LINE L1 5906 6067 -515 3 747 508 333 29 71 chr4 21344008 21344218 -134285902 + B3A SINE B2 1 201 -15 3 747 23 0 0 0 chr4 21345401 21345424 -134284696 + AT_rich Low_complexity Low_complexity 1 23 0 3 747 475 352 59 18 chr4 21345996 21346268 -134283852 - MLT1D LTR MaLR -220 285 3 3 747 5922 124 22 7 chr4 21346328 21347238 -134282882 + Lx3B LINE L1 6047 6970 -3 3 747 26 0 0 0 chr4 21347246 21347272 -134282848 + AT_rich Low_complexity Low_complexity 1 26 0 3 747 632 171 89 8 chr4 21347486 21347610 -134282510 - B1_Mus1 SINE Alu 0 148 15 3 747 274 288 77 92 chr4 21347504 21347634 -134282486 - MT2B LTR ERVL -324 277 150 3 747 1337 58 0 0 chr4 21347754 21347925 -134282195 - L1_Mus1 LINE L1 0 6567 6397 3 747 2626 33 3 0 chr4 21347927 21348262 -134281858 + L1_Mus1 LINE L1 5698 6033 -534 4 747 4848 126 23 0 chr4 21348906 21349891 -134280229 + L1Md_F LINE L1 423 1434 -4449 4 747 30820 19 0 12 chr4 21349894 21354482 -134275638 + L1Md_F2 LINE L1 465 4994 -889 4 747 26172 68 3 1 chr4 21354466 21358112 -134272008 + L1Md_F2 LINE L1 1930 5584 -299 4 747 7863 56 0 11 chr4 21358114 21359119 -134271001 + L1Md_F2 LINE L1 5587 6580 -2 4 747 5539 92 21 10 chr4 21359110 21359904 -134270216 + L1Md_F2 LINE L1 5780 6582 0 4 747 30 45 0 0 chr4 21359920 21359964 -134270156 + AT_rich Low_complexity Low_complexity 1 44 0 4 747 773 68 17 8 chr4 21360336 21360454 -134269666 + L1Md_F2 LINE L1 6450 6568 -14 4 747 25 0 0 0 chr4 21360454 21360479 -134269641 + AT_rich Low_complexity Low_complexity 1 25 0 4 747 572 229 5 63 chr4 21360500 21360691 -134269429 - L1_Mur3 LINE L1 -7486 226 47 4 747 531 0 0 0 chr4 21360745 21360804 -134269316 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 747 320 373 33 20 chr4 21361064 21361217 -134268903 + MLT1A LTR MaLR 137 291 -83 4 747 322 246 13 40 chr4 21362162 21362238 -134267882 + ID4_ SINE ID 10 83 0 4 747 363 280 55 16 chr4 21363069 21363196 -134266924 + B1F SINE Alu 5 136 -13 4 747 1232 263 133 8 chr4 21363294 21363654 -134266466 - MTD LTR MaLR 0 419 15 4 747 476 223 11 0 chr4 21363662 21363756 -134266364 - MTD-int LTR MaLR 0 1258 1164 4 747 824 230 14 53 chr4 21363759 21363966 -134266154 - ORR1D2 LTR MaLR 0 370 172 4 93 1777 317 31 15 chr4 21364119 21364805 -134265315 + Lx8 LINE L1 6662 7358 -115 4 748 315 0 0 0 chr4 21365116 21365151 -134264969 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 748 309 284 62 0 chr4 21365151 21365232 -134264888 - RSINE1 SINE B4 -26 139 54 4 748 842 298 78 96 chr4 21365292 21365496 -134264624 + B4 SINE B4 1 199 -93 4 748 3181 101 10 14 chr4 21365496 21365978 -134264142 + L1_Mus3 LINE L1 6159 6638 0 4 748 842 298 78 96 chr4 21365978 21366066 -134264054 + B4 SINE B4 200 288 -4 4 748 540 0 0 0 chr4 21366071 21366131 -134263989 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 748 421 218 0 11 chr4 21366205 21366293 -134263827 + B4 SINE B4 3 89 -203 4 748 2755 131 84 0 chr4 21366303 21366792 -134263328 - Lx2 LINE L1 -92 5791 5262 4 748 5125 122 29 7 chr4 21366794 21367634 -134262486 + Lx2 LINE L1 5786 6643 -354 4 748 1201 130 35 61 chr4 21367634 21367863 -134262257 + Lx2 LINE L1 6775 6997 0 4 748 381 302 28 0 chr4 21367952 21368058 -134262062 + B4A SINE B4 183 291 -1 4 748 357 176 0 0 chr4 21368059 21368133 -134261987 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 748 3974 201 57 66 chr4 21368334 21369369 -134260751 + RMER1B Other Other 31 1056 -10 4 748 564 15 0 0 chr4 21369825 21369890 -134260230 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 748 944 8 32 0 chr4 21369890 21370014 -134260106 + (GA)n Simple_repeat Simple_repeat 1 129 0 4 748 225 94 0 0 chr4 21370129 21370161 -134259959 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 4 748 555 249 96 10 chr4 21370620 21370819 -134259301 + MER20 DNA MER1_type 1 216 -3 4 748 360 312 97 65 chr4 21373188 21373404 -134256716 + MLT1A0 LTR MaLR 67 289 -76 4 748 778 282 38 55 chr4 21373857 21374150 -134255970 - MTD LTR MaLR -122 297 10 4 748 483 301 135 47 chr4 21374206 21374398 -134255722 + MLT1A1 LTR MaLR 1 209 -199 4 748 292 150 0 77 chr4 21375674 21375739 -134254381 - Lx5 LINE L1 -1032 6018 5959 4 748 494 236 5 118 chr4 21375732 21375919 -134254201 + Lx5 LINE L1 6883 7048 -2 4 748 254 256 0 24 chr4 21376822 21376906 -134253214 - L1M2 LINE L1 -4630 2219 2138 4 748 1469 134 9 0 chr4 21377065 21377296 -134252824 - Lx2 LINE L1 0 6997 6765 4 748 5066 116 40 2 chr4 21377296 21378119 -134252001 - Lx2 LINE L1 -363 6634 5781 4 748 22 0 0 0 chr4 21378438 21378460 -134251660 + AT_rich Low_complexity Low_complexity 1 22 0 4 748 9487 164 18 2 chr4 21378473 21379605 -134250515 - Lx2 LINE L1 -101 5782 4628 4 748 186 43 0 0 chr4 21379605 21379628 -134250492 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 748 9487 164 16 88 chr4 21379628 21380860 -134249260 - Lx2 LINE L1 -1256 4630 3947 4 748 8308 35 2 2 chr4 21380860 21381856 -134248264 + L1Md_F2 LINE L1 5587 6582 0 4 748 12960 132 16 57 chr4 21381856 21385771 -134244349 - Lx2 LINE L1 -1927 3959 549 4 748 192 91 44 22 chr4 21385935 21385980 -134244140 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 748 1329 184 9 5 chr4 21386014 21386238 -134243882 + URR1B DNA MER1_type 1 225 0 4 748 269 287 73 7 chr4 21386269 21386406 -134243714 + L1_Rod LINE L1 2677 2822 -3025 4 748 423 296 32 143 chr4 21386515 21386599 -134243521 + L1M3 LINE L1 2960 3037 -3106 4 748 874 260 45 0 chr4 21386599 21386799 -134243321 + B3 SINE B2 1 209 -7 4 748 423 296 32 143 chr4 21386799 21386994 -134243126 + L1M3 LINE L1 3038 3208 -2935 4 748 645 191 197 0 chr4 21386999 21387177 -134242943 + B3 SINE B2 4 216 0 4 748 287 320 142 15 chr4 21387215 21387554 -134242566 + L1_Mur3 LINE L1 3158 3539 -2341 4 748 581 150 132 9 chr4 21387572 21387686 -134242434 - Lx5 LINE L1 -563 6487 6360 4 748 1509 207 41 54 chr4 21387686 21387774 -134242346 + Lx5 LINE L1 6652 6733 -317 4 748 204 40 0 0 chr4 21387774 21387799 -134242321 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 748 1509 207 41 54 chr4 21387799 21388078 -134242042 + Lx5 LINE L1 6734 7014 -36 4 748 440 232 28 77 chr4 21388444 21388626 -134241494 + Lx7 LINE L1 5620 5792 -1904 4 748 22 56 0 0 chr4 21388677 21388713 -134241407 + AT_rich Low_complexity Low_complexity 1 36 0 4 748 837 193 19 44 chr4 21388851 21389057 -134241063 - Lx LINE L1 -5 6649 6449 4 748 6595 61 1 0 chr4 21389059 21389925 -134240195 - L1_Mus1 LINE L1 0 6567 5701 4 748 701 71 0 0 chr4 21389941 21390079 -134240041 + L1_Mus1 LINE L1 6463 6567 0 4 748 425 243 136 77 chr4 21390082 21390354 -134239766 + L1M3 LINE L1 3952 4239 -1901 4 748 222 179 18 18 chr4 21390898 21390955 -134239165 + T-rich Low_complexity Low_complexity 6 62 0 4 748 620 125 71 9 chr4 21390955 21391068 -134239052 - PB1D9 SINE Alu 0 120 1 4 748 495 0 0 0 chr4 21391435 21391490 -134238630 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 748 326 231 104 32 chr4 21391646 21391771 -134238349 + MIRb SINE MIR 121 254 -14 4 748 30 77 0 0 chr4 21392137 21392202 -134237918 + AT_rich Low_complexity Low_complexity 1 65 0 4 748 293 348 18 0 chr4 21392408 21392520 -134237600 - Lx7 LINE L1 -390 7306 7193 4 748 287 49 24 0 chr4 21392563 21392604 -134237516 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 4 748 529 281 141 0 chr4 21392609 21392794 -134237326 - Lx6 LINE L1 -169 7291 7081 4 748 420 219 39 0 chr4 21392793 21392921 -134237199 + L1MEc LINE L1 2310 2442 -3958 4 748 395 265 75 96 chr4 21392921 21393067 -134237053 + B4 SINE B4 79 221 -71 4 748 896 42 34 0 chr4 21392954 21393072 -134237048 + B1_Mus1 SINE Alu 27 148 0 4 748 240 59 0 0 chr4 21393082 21393116 -134237004 + (A)n Simple_repeat Simple_repeat 1 34 0 4 748 668 295 97 35 chr4 21393123 21393402 -134236718 + L1MEc LINE L1 2466 2778 -3541 4 748 396 0 0 0 chr4 21393402 21393446 -134236674 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 4 748 668 295 97 35 chr4 21393446 21393774 -134236346 + L1MEc LINE L1 2779 3111 -3208 4 748 392 305 91 27 chr4 21393833 21394052 -134236068 + L1MC LINE L1 3065 3297 -2849 4 748 1866 152 148 76 chr4 21394305 21394476 -134235644 - RMER4A LTR ERVK 0 466 319 4 748 515 24 0 56 chr4 21394476 21394565 -134235555 + (GTTTG)n Simple_repeat Simple_repeat 1 84 0 4 748 1866 152 148 76 chr4 21394565 21394813 -134235307 - RMER4A LTR ERVK -148 318 17 4 748 700 284 124 11 chr4 21394950 21395320 -134234800 - L1MA5 LINE L1 -395 5905 5494 4 748 585 316 35 35 chr4 21395321 21395338 -134234782 - B3A SINE B2 -1 197 184 4 748 198 0 0 0 chr4 21395338 21395360 -134234760 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 748 234 0 0 0 chr4 21395360 21395385 -134234735 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 748 585 316 35 35 chr4 21395385 21395563 -134234557 - B3A SINE B2 -15 183 2 4 748 340 297 8 0 chr4 21395575 21395693 -134234427 - L1P5 LINE L1 -676 5480 5362 4 748 35 24 0 0 chr4 21395703 21395745 -134234375 + AT_rich Low_complexity Low_complexity 1 42 0 4 748 29 0 0 0 chr4 21395848 21395877 -134234243 + AT_rich Low_complexity Low_complexity 1 29 0 4 748 5441 56 0 0 chr4 21396633 21397351 -134232769 + L1_Mm LINE L1 4283 5000 -883 4 748 33830 52 3 16 chr4 21397360 21402507 -134227613 + L1Md_F3 LINE L1 513 5586 -297 4 748 8058 37 3 2 chr4 21402507 21403490 -134226630 + L1Md_F3 LINE L1 5587 6570 -14 4 748 565 258 35 59 chr4 21403671 21403873 -134226247 + B3A SINE B2 2 198 0 4 748 2185 180 45 10 chr4 21403985 21404382 -134225738 + MTC LTR MaLR 1 411 -10 4 748 5826 174 26 13 chr4 21404382 21405450 -134224670 + MTC-int LTR MaLR 2 1083 -175 4 748 10889 86 20 10 chr4 21405450 21407735 -134222385 + L1_Mus1 LINE L1 552 2868 -1046 4 748 306 0 0 0 chr4 21407735 21407769 -134222351 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 748 10889 160 10 81 chr4 21407769 21408217 -134221903 + L1_Mus1 LINE L1 2869 3164 -2719 4 748 3338 116 2 4 chr4 21408207 21408737 -134221383 + L1_Mm LINE L1 4770 5298 -585 4 748 3971 109 7 0 chr4 21408727 21409340 -134220780 + L1_Mus1 LINE L1 3343 3959 -1924 4 748 34417 39 2 7 chr4 21409341 21414720 -134215400 + L1Md_T LINE L1 237 5586 -297 4 748 8435 34 1 0 chr4 21414720 21415715 -134214405 + L1Md_T LINE L1 5587 6582 0 4 748 12611 58 0 138 chr4 21415715 21417356 -134212764 + L1_Mus1 LINE L1 3950 5586 -297 4 748 7583 64 3 14 chr4 21417356 21418358 -134211762 + L1Md_F2 LINE L1 5588 6578 -4 4 748 12611 58 9 66 chr4 21418358 21419625 -134210495 + L1_Mus1 LINE L1 5587 6564 -3 4 748 546 274 6 24 chr4 21419636 21419807 -134210313 - RMER17C LTR ERVK -473 336 1 4 748 959 241 47 16 chr4 21419825 21420082 -134210038 - RMER15-int LTR ERVL -259 4740 4476 4 748 460 339 93 20 chr4 21420090 21420391 -134209729 - Lx8 LINE L1 -961 6512 6190 4 748 321 294 124 7 chr4 21420935 21421072 -134209048 - RMER15-int LTR ERVL -3860 1139 987 4 748 1479 298 31 38 chr4 21421092 21421643 -134208477 - RMER15-int LTR ERVL -4070 929 383 4 748 653 259 133 22 chr4 21421670 21421895 -134208225 - RMER15 LTR ERVL -2 573 324 4 748 208 369 54 0 chr4 21421991 21422121 -134207999 + MIRb SINE MIR 103 239 -29 4 748 1833 245 2 0 chr4 21425230 21425655 -134204465 + L1_Mur3 LINE L1 261 686 -7042 4 748 1112 93 58 6 chr4 21426241 21426413 -134203707 + B2_Mm2 SINE B2 1 181 -14 4 748 1294 199 96 18 chr4 21426550 21426934 -134203186 + L1_Mur3 LINE L1 705 1118 -6610 4 748 2620 151 106 15 chr4 21426929 21427521 -134202599 + L1_Mur3 LINE L1 2418 3063 -2817 4 748 576 95 0 0 chr4 21427559 21427643 -134202477 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 4 748 663 177 6 6 chr4 21427643 21427802 -134202318 + L1_Mur3 LINE L1 3047 3205 -2675 4 748 1794 211 213 41 chr4 21427821 21428329 -134201791 + RMER19B LTR ERVK 308 902 0 4 748 951 161 23 9 chr4 21428329 21428548 -134201572 + L1_Mur3 LINE L1 3199 3420 -2460 4 748 1966 227 16 167 chr4 21428594 21429212 -134200908 + RMER19C LTR ERVK 83 607 -4 4 748 1957 172 88 15 chr4 21429222 21429701 -134200419 + L1_Mur3 LINE L1 3435 3948 -1932 4 748 1859 176 33 33 chr4 21429700 21430124 -134199996 + L1_Mur3 LINE L1 4863 5286 -594 4 748 696 240 0 0 chr4 21430137 21430266 -134199854 + B3 SINE B2 2 130 -86 4 748 685 170 0 132 chr4 21430310 21430375 -134199745 + L1_Mur3 LINE L1 5282 5346 -534 4 748 324 0 0 0 chr4 21430375 21430411 -134199709 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 4 748 685 170 0 132 chr4 21430411 21430447 -134199673 + L1_Mur3 LINE L1 5347 5358 -522 4 748 1419 40 0 0 chr4 21430447 21430621 -134199499 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 4 748 685 170 0 132 chr4 21430621 21430715 -134199405 + L1_Mur3 LINE L1 5359 5452 -428 4 748 5995 148 29 11 chr4 21430704 21431066 -134199054 + L1_Mur1 LINE L1 2506 2878 -3008 4 748 3854 70 36 8 chr4 21431066 21431587 -134198533 + L1_Mus3 LINE L1 6103 6638 0 4 748 5995 148 29 11 chr4 21431587 21432427 -134197693 + L1_Mur1 LINE L1 2879 3730 -2156 4 748 433 79 32 0 chr4 21432429 21432492 -134197628 - RLTR41 LTR ERV1 -381 65 1 4 748 234 269 0 82 chr4 21432523 21432596 -134197524 - RMER15 LTR ERVL -419 156 90 5 748 33691 48 1 4 chr4 21432599 21437994 -134192126 + L1Md_A LINE L1 113 5589 -297 5 748 8370 38 0 0 chr4 21437994 21438990 -134191130 + L1Md_T LINE L1 5587 6582 0 5 748 33691 42 1 1 chr4 21438990 21439006 -134191114 + L1Md_A LINE L1 5590 5604 -282 5 748 14458 27 0 2 chr4 21438992 21440769 -134189351 + L1Md_A LINE L1 3813 5589 -297 5 748 8261 43 0 0 chr4 21440769 21441765 -134188355 + L1Md_T LINE L1 5587 6582 0 5 748 14458 27 0 2 chr4 21441765 21441783 -134188337 + L1Md_A LINE L1 5590 5604 -282 5 748 14651 21 1 1 chr4 21441769 21443545 -134186575 + L1Md_A LINE L1 3813 5589 -297 5 748 8332 39 0 0 chr4 21443545 21444541 -134185579 + L1Md_A LINE L1 5590 6585 0 5 748 7337 23 0 1 chr4 21444541 21444556 -134185564 + L1Md_T LINE L1 5587 5601 -282 5 748 14619 17 2 0 chr4 21444542 21446315 -134183805 + L1Md_T LINE L1 3810 5586 -297 5 748 8481 33 0 0 chr4 21446316 21447311 -134182809 + L1Md_T LINE L1 5588 6582 0 5 748 4989 128 44 0 chr4 21447311 21448158 -134181962 + Lx2B LINE L1 3707 4590 -1287 5 748 8501 133 21 4 chr4 21448192 21449894 -134180226 + Lx2B LINE L1 5274 6997 -3 5 748 3372 227 21 77 chr4 21449938 21451288 -134178832 + Lx7 LINE L1 6057 7542 -154 5 748 522 0 0 0 chr4 21451469 21451527 -134178593 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 748 390 21 0 0 chr4 21451530 21451577 -134178543 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 5 748 42 20 0 0 chr4 21451736 21451785 -134178335 + AT_rich Low_complexity Low_complexity 1 49 0 5 748 21 0 0 0 chr4 21452724 21452745 -134177375 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 21 0 0 0 chr4 21453143 21453164 -134176956 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 205 211 18 0 chr4 21453507 21453564 -134176556 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 748 386 335 86 20 chr4 21454393 21454591 -134175529 - MER20 DNA MER1_type -6 213 3 5 748 272 260 21 0 chr4 21456274 21456370 -134173750 + L1MB2 LINE L1 6043 6140 -31 5 748 400 312 22 7 chr4 21456588 21456727 -134173393 + GA-rich Low_complexity Low_complexity 1 141 0 5 748 226 299 37 49 chr4 21456890 21456971 -134173149 - MLT2F LTR ERVL -101 562 483 5 748 543 248 18 0 chr4 21457387 21457500 -134172620 + PB1D7 SINE Alu 1 115 -5 5 748 517 170 11 0 chr4 21457765 21457859 -134172261 - L1VL2 LINE L1 -5962 373 279 5 748 311 108 31 0 chr4 21457987 21458052 -134172068 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 748 28 29 0 0 chr4 21460175 21460210 -134169910 + AT_rich Low_complexity Low_complexity 1 35 0 5 748 567 144 0 0 chr4 21460407 21460504 -134169616 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 748 255 282 0 13 chr4 21460581 21460660 -134169460 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 5 748 185 326 86 11 chr4 21461044 21461137 -134168983 - L2b LINE L2 -2 3373 3274 5 748 3575 193 89 29 chr4 21461500 21462318 -134167802 + Lx5 LINE L1 6184 7050 0 5 748 1130 128 21 11 chr4 21462466 21462656 -134167464 - B2_Mm2 SINE B2 -2 193 2 5 748 23 0 0 0 chr4 21462901 21462924 -134167196 + AT_rich Low_complexity Low_complexity 1 23 0 5 748 604 302 7 41 chr4 21464029 21464174 -134165946 + RSINE1 SINE B4 7 146 -19 5 748 219 69 0 0 chr4 21464176 21464205 -134165915 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 748 24 0 0 0 chr4 21464214 21464238 -134165882 + AT_rich Low_complexity Low_complexity 1 24 0 5 748 2846 76 5 5 chr4 21464987 21465371 -134164749 + L1_Mus3 LINE L1 6248 6631 -7 5 748 732 178 266 0 chr4 21465479 21465648 -134164472 + B3 SINE B2 1 214 -2 5 748 675 211 113 0 chr4 21465828 21465961 -134164159 - B1_Mus1 SINE Alu 0 148 1 5 748 204 40 0 0 chr4 21466308 21466333 -134163787 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 748 1811 101 0 40 chr4 21466342 21466620 -134163500 - ORR1A2 LTR MaLR -58 269 3 5 748 21 0 0 0 chr4 21466694 21466715 -134163405 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 211 233 0 16 chr4 21466736 21466797 -134163323 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 5 748 494 230 191 5 chr4 21466896 21466967 -134163153 - Lx7 LINE L1 -501 7195 7091 5 748 417 20 0 0 chr4 21466967 21467017 -134163103 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 748 494 230 191 5 chr4 21467017 21467133 -134162987 - Lx7 LINE L1 -606 7090 6975 5 748 677 320 92 22 chr4 21467161 21467519 -134162601 + LTR52 LTR ERVL 25 407 -14 5 748 250 321 0 0 chr4 21467539 21467623 -134162497 + LTR52-int LTR ERVL 10 93 -3463 5 748 679 318 55 18 chr4 21467746 21467985 -134162135 + LTR52-int LTR ERVL 306 550 -3006 5 748 2963 65 37 3 chr4 21467985 21468368 -134161752 + MTA_Mm LTR MaLR 1 396 0 5 748 679 318 55 18 chr4 21468368 21468471 -134161649 + LTR52-int LTR ERVL 551 661 -2895 5 748 360 286 16 0 chr4 21468705 21468831 -134161289 + LTR52-int LTR ERVL 1176 1303 -4382 5 748 23 0 0 0 chr4 21468848 21468871 -134161249 + AT_rich Low_complexity Low_complexity 1 23 0 5 748 477 265 131 45 chr4 21468879 21469191 -134160929 + LTR52-int LTR ERVL 1394 1732 -3953 5 748 486 258 122 19 chr4 21469267 21469480 -134160640 + LTR52-int LTR ERVL 1862 2096 -3589 5 748 676 352 93 37 chr4 21469748 21470618 -134159502 + LTR52-int LTR ERVL 2250 3168 -2517 5 748 351 248 99 54 chr4 21470632 21470743 -134159377 - PB1 SINE Alu -3 124 9 5 748 354 331 31 13 chr4 21470750 21470909 -134159211 + LTR52-int LTR ERVL 3395 3556 0 5 748 668 291 80 30 chr4 21470926 21471163 -134158957 + LTR52 LTR ERVL 29 277 -144 5 748 26 50 0 0 chr4 21471340 21471380 -134158740 + AT_rich Low_complexity Low_complexity 1 40 0 5 748 2118 175 57 18 chr4 21471552 21471936 -134158184 + MTC LTR MaLR 23 421 0 5 748 21 0 0 0 chr4 21472938 21472959 -134157161 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 920 119 88 0 chr4 21472960 21473119 -134157001 - Lx3A LINE L1 -5 6976 6804 5 748 527 237 8 0 chr4 21473123 21473254 -134156866 + Lx9 LINE L1 7342 7473 -171 5 748 935 226 41 31 chr4 21473612 21473808 -134156312 - B3 SINE B2 0 216 19 5 748 324 70 0 0 chr4 21473862 21473905 -134156215 + (T)n Simple_repeat Simple_repeat 1 43 0 5 748 747 239 103 31 chr4 21475485 21475846 -134154274 + MTD LTR MaLR 1 400 -7 5 748 435 38 0 0 chr4 21475853 21475906 -134154214 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 5 748 233 338 54 0 chr4 21476116 21476190 -134153930 - MLT1F LTR MaLR -85 463 386 5 748 954 318 90 9 chr4 21476454 21476775 -134153345 - MTD LTR MaLR -67 352 6 5 748 411 296 117 111 chr4 21476930 21477325 -134152795 + RMER10A LTR ERVL 22 418 -24 5 748 351 352 103 58 chr4 21477416 21477768 -134152352 + HAL1 LINE L1 54 425 -2082 5 748 1116 262 71 18 chr4 21477768 21478161 -134151959 - MTD LTR MaLR -4 415 2 5 748 351 352 103 58 chr4 21478161 21478185 -134151935 + HAL1 LINE L1 426 447 -2060 5 748 2752 145 14 35 chr4 21478256 21478741 -134151379 - MT2C_Mm LTR ERVL 0 475 1 5 748 263 301 142 0 chr4 21478741 21478848 -134151272 + HAL1 LINE L1 584 706 -1801 5 748 31 0 0 0 chr4 21478864 21478895 -134151225 + AT_rich Low_complexity Low_complexity 1 31 0 5 748 701 259 95 20 chr4 21479128 21479435 -134150685 + RMER20B LTR ERVK 194 579 -48 5 748 398 139 0 11 chr4 21479714 21479801 -134150319 + GA-rich Low_complexity Low_complexity 2 87 0 5 748 13374 85 18 3 chr4 21479801 21482406 -134147714 + L1VL2 LINE L1 312 2959 -656 5 748 1817 28 0 0 chr4 21482405 21482623 -134147497 + L1Md_F3 LINE L1 5369 5586 -297 5 748 7917 43 13 0 chr4 21482625 21483594 -134146526 + L1Md_F3 LINE L1 5589 6570 -14 5 748 238 26 0 0 chr4 21483603 21483641 -134146479 + L1_Mur1 LINE L1 3254 3291 -2595 5 748 17670 176 66 29 chr4 21483715 21484334 -134145786 + Lx6 LINE L1 1409 2055 -3825 5 748 243 0 0 0 chr4 21484334 21484361 -134145759 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 748 198 0 0 0 chr4 21484361 21484382 -134145738 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 748 17670 176 66 29 chr4 21484382 21485699 -134144421 + Lx6 LINE L1 2056 3464 -2416 5 748 243 0 0 0 chr4 21485699 21485726 -134144394 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 748 246 105 0 0 chr4 21485726 21485763 -134144357 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 748 17670 176 66 29 chr4 21485763 21486736 -134143384 + Lx6 LINE L1 3465 4477 -1403 5 748 3381 33 3 0 chr4 21486736 21487127 -134142993 - MTA_Mm LTR MaLR 0 396 5 5 748 17670 193 59 25 chr4 21487127 21488950 -134141170 + Lx6 LINE L1 4478 6368 -690 5 748 1319 160 131 11 chr4 21488950 21489253 -134140867 - RMER6C LTR ERVK -40 680 365 5 748 1067 134 6 0 chr4 21489253 21489432 -134140688 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 748 479 17 17 0 chr4 21489435 21489495 -134140625 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 748 783 248 96 54 chr4 21489495 21489520 -134140600 - RMER6C LTR ERVK -356 364 338 5 748 2241 189 86 8 chr4 21489528 21490030 -134140090 + Lx6 LINE L1 6514 7054 -4 5 748 4220 29 0 0 chr4 21490134 21490621 -134139499 - L1Md_A LINE L1 -1 6581 6095 5 748 914 298 47 14 chr4 21491038 21491317 -134138803 + B4 SINE B4 3 290 -2 5 748 333 309 127 29 chr4 21491362 21491535 -134138585 + Charlie21a DNA MER1_type 136 325 -888 5 748 25 0 0 0 chr4 21491872 21491897 -134138223 + AT_rich Low_complexity Low_complexity 1 25 0 5 748 943 229 19 0 chr4 21491910 21492115 -134138005 + B3 SINE B2 1 209 -7 5 748 340 74 0 0 chr4 21492307 21492361 -134137759 - Lx2 LINE L1 -1 6996 6943 5 748 1263 119 0 0 chr4 21492361 21492554 -134137566 - Lx2 LINE L1 -447 6550 6358 5 748 21 82 0 0 chr4 21492631 21492680 -134137440 + AT_rich Low_complexity Low_complexity 1 49 0 5 748 879 138 7 20 chr4 21494126 21494274 -134135846 + LFSINE_Vert SINE SINE 99 244 -215 5 748 23 0 0 0 chr4 21494375 21494398 -134135722 + AT_rich Low_complexity Low_complexity 1 23 0 5 748 286 296 43 17 chr4 21494590 21494707 -134135413 + L2 LINE L2 406 525 -2894 5 748 222 37 0 0 chr4 21494882 21494909 -134135211 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 748 282 56 0 0 chr4 21494913 21494949 -134135171 + (CACAC)n Simple_repeat Simple_repeat 1 36 0 5 749 299 264 112 67 chr4 21496013 21496281 -134133839 + L1MCc LINE L1 18 297 -6126 5 749 6089 146 41 23 chr4 21496424 21497503 -134132617 - Lx4A LINE L1 -2 7056 5959 5 749 817 110 26 40 chr4 21497504 21497655 -134132465 - L1_Mur2 LINE L1 -1974 3903 3755 5 749 1188 148 29 0 chr4 21497636 21497845 -134132275 - L1_Mur2 LINE L1 -3091 2786 2572 5 749 216 0 0 0 chr4 21497999 21498023 -134132097 + (A)n Simple_repeat Simple_repeat 1 24 0 5 749 2597 82 3 8 chr4 21498269 21498650 -134131470 - L1_Mur2 LINE L1 -3300 2577 2199 5 749 201 74 0 0 chr4 21498730 21498757 -134131363 + (CTTG)n Simple_repeat Simple_repeat 2 28 0 5 749 947 79 0 0 chr4 21498757 21498883 -134131237 - B1_Mm SINE Alu -21 126 1 5 749 399 226 26 99 chr4 21498883 21498923 -134131197 - MT2B2 LTR ERVL -432 152 124 5 749 5690 55 3 0 chr4 21498925 21499656 -134130464 - L1_Mus1 LINE L1 -60 6507 5775 5 749 755 284 189 17 chr4 21499654 21499998 -134130122 + Lx9 LINE L1 6490 6892 -752 5 749 1899 251 51 20 chr4 21500005 21500555 -134129565 + Lx9 LINE L1 6900 7466 -178 1 749 3787 65 17 0 chr4 21500676 21501151 -134128969 + L1_Mus1 LINE L1 6049 6531 -36 2 749 670 81 0 11 chr4 21501142 21501215 -134128905 + L1_Mm LINE L1 5514 5586 -297 3 749 8267 36 11 2 chr4 21501215 21502202 -134127918 + L1Md_F2 LINE L1 5587 6582 0 4 749 670 81 0 11 chr4 21502202 21502215 -134127905 + L1_Mm LINE L1 5587 5599 -284 3 749 2506 237 70 29 chr4 21502436 21503032 -134127088 - Lx5 LINE L1 -7 7043 6423 5 749 4321 145 95 0 chr4 21503021 21503892 -134126228 - Lx5 LINE L1 -1071 5979 5044 5 749 695 294 43 111 chr4 21504095 21504653 -134125467 + L1M3 LINE L1 3548 4067 -2079 6 749 750 208 14 180 chr4 21504653 21504947 -134125173 + Lx5 LINE L1 6794 7038 -12 7 749 256 225 70 0 chr4 21504961 21505032 -134125088 + L1M3 LINE L1 4041 4116 -2027 6 749 438 272 156 20 chr4 21505183 21505427 -134124693 + RMER15 LTR ERVL 299 575 0 8 749 393 229 67 67 chr4 21505427 21505577 -134124543 + L1M3 LINE L1 4125 4274 -1866 6 749 272 262 0 0 chr4 21505620 21505681 -134124439 + L1MC LINE L1 3818 3878 -2268 9 749 287 247 21 41 chr4 21505692 21505789 -134124331 + GA-rich Low_complexity Low_complexity 4 98 0 1 749 306 339 25 0 chr4 21505795 21505913 -134124207 - RSINE1 SINE B4 -41 124 4 1 749 742 156 106 0 chr4 21506085 21506226 -134123894 + Lx6 LINE L1 4141 4296 -1584 1 749 38640 16 2 7 chr4 21506221 21511602 -134118518 + L1Md_T LINE L1 238 5586 -297 1 749 8086 59 0 0 chr4 21511602 21512598 -134117522 + L1Md_T LINE L1 5587 6582 0 1 749 3794 16 0 0 chr4 21512612 21513040 -134117080 + L1Md_A LINE L1 5159 5586 -297 1 749 8846 22 0 0 chr4 21513040 21514036 -134116084 + L1Md_A LINE L1 5587 6582 0 1 749 587 164 0 130 chr4 21514036 21514123 -134115997 + Lx6 LINE L1 4287 4371 -1509 1 749 293 0 27 0 chr4 21514123 21514160 -134115960 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 749 587 164 0 130 chr4 21514160 21514233 -134115887 + Lx6 LINE L1 4372 4426 -1454 1 749 243 0 0 0 chr4 21514234 21514261 -134115859 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 1 749 368 125 0 0 chr4 21514261 21514317 -134115803 + RLTR1B LTR ERV1 355 410 -102 1 749 947 145 24 0 chr4 21514321 21514487 -134115633 + RLTR1B LTR ERV1 343 512 0 1 749 14486 67 79 32 chr4 21514487 21515086 -134115034 + RLTR1B-int LTR ERV1 1 611 -2688 1 749 225 0 0 0 chr4 21515086 21515111 -134115009 + (CCA)n Simple_repeat Simple_repeat 3 27 0 1 749 14486 70 68 27 chr4 21515111 21517081 -134113039 + RLTR1B-int LTR ERV1 612 3299 0 1 749 1153 148 141 49 chr4 21517081 21517509 -134112611 + RLTR1B LTR ERV1 1 436 -76 1 749 6979 209 86 25 chr4 21517524 21519970 -134110150 + Lx6 LINE L1 4422 7037 -659 1 749 454 188 10 10 chr4 21519978 21520080 -134110040 + Lx2B LINE L1 6876 6977 -23 2 749 996 33 0 0 chr4 21520089 21520209 -134109911 + (GAA)n Simple_repeat Simple_repeat 3 122 0 2 749 261 0 0 0 chr4 21520209 21520238 -134109882 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 749 537 16 0 0 chr4 21520238 21520300 -134109820 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 2 749 289 337 30 10 chr4 21520896 21520914 -134109206 + B4 SINE B4 67 86 -206 2 749 541 237 84 78 chr4 21520914 21521025 -134109095 + B1_Mur3 SINE Alu 2 117 -32 2 749 3588 13 2 0 chr4 21521025 21521420 -134108700 - MTA_Mm LTR MaLR 0 396 1 2 749 9796 17 0 1 chr4 21521420 21522519 -134107601 - MTA_Mm-int LTR MaLR 0 1098 1 2 749 3588 13 2 0 chr4 21522519 21522914 -134107206 - MTA_Mm LTR MaLR 0 396 1 2 749 541 237 84 78 chr4 21522914 21522942 -134107178 + B1_Mur3 SINE Alu 118 142 -7 2 749 2021 124 3 0 chr4 21522945 21523228 -134106892 + L1VL4 LINE L1 195 478 -5824 2 749 1994 201 99 32 chr4 21523282 21523715 -134106405 - Lx5 LINE L1 -2 7048 6587 2 749 1157 165 153 4 chr4 21523715 21523976 -134106144 - RMER19B LTR ERVK -295 607 308 2 749 5294 147 26 8 chr4 21523998 21524881 -134105239 - L1_Mur2 LINE L1 -273 5604 4706 3 749 797 122 147 6 chr4 21524894 21525051 -134105069 - B2_Mm2 SINE B2 -6 189 11 3 749 1010 136 17 0 chr4 21525602 21525778 -134104342 + G-rich Low_complexity Low_complexity 1 179 0 3 749 180 97 0 0 chr4 21526072 21526103 -134104017 + (A)n Simple_repeat Simple_repeat 1 31 0 3 749 334 204 152 34 chr4 21526289 21526467 -134103653 - L1MA8 LINE L1 0 6300 6102 3 749 514 223 167 27 chr4 21526474 21526695 -134103425 - L1MA8 LINE L1 -349 5942 5691 3 749 625 265 13 25 chr4 21526696 21526855 -134103265 + RSINE1 SINE B4 5 161 -4 3 749 780 134 39 0 chr4 21526867 21526994 -134103126 - Lx3A LINE L1 -1174 5807 5676 3 749 998 124 4 144 chr4 21526991 21527227 -134102893 - Lx3A LINE L1 -1184 4693 4491 3 749 4169 139 25 129 chr4 21527248 21528189 -134101931 + ORR1A4-int LTR MaLR 1120 1963 0 3 749 2031 118 0 64 chr4 21528189 21528532 -134101588 + ORR1A4 LTR MaLR 1 321 -8 3 749 3319 53 2 0 chr4 21528653 21529048 -134101072 + MTA_Mm LTR MaLR 1 396 0 3 749 192 336 69 46 chr4 21529793 21529924 -134100196 + MIR SINE MIR 12 145 -117 3 749 999 39 0 0 chr4 21530845 21530975 -134099145 + B1_Mus2 SINE Alu 12 141 -6 4 749 261 0 0 0 chr4 21530980 21531009 -134099111 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 749 1677 157 68 24 chr4 21531500 21531840 -134098280 + ORR1B2 LTR MaLR 5 359 -8 4 749 212 267 38 62 chr4 21532346 21532426 -134097694 - PB1D10 SINE Alu 0 117 40 4 749 412 207 13 1 chr4 21532514 21532610 -134097510 - B4A SINE B4 -194 98 2 4 749 1518 82 25 102 chr4 21532628 21532913 -134097207 - RLTR31B_Mm LTR ERVK -294 263 1 4 749 343 200 11 34 chr4 21533084 21533172 -134096948 + PB1D10 SINE Alu 25 110 -7 4 749 297 271 128 18 chr4 21533463 21533572 -134096548 + B1F SINE Alu 12 132 -17 4 749 444 51 0 0 chr4 21533573 21533632 -134096488 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 4 749 655 308 122 15 chr4 21533724 21534060 -134096060 - MLT1B LTR MaLR -7 383 12 4 749 1926 62 12 4 chr4 21535271 21535528 -134094592 - L1Md_F3 LINE L1 -1 6583 6325 5 749 353 125 0 30 chr4 21536272 21536338 -134093782 + GA-rich Low_complexity Low_complexity 3 66 0 5 749 844 219 81 5 chr4 21536483 21536680 -134093440 - B3 SINE B2 0 216 5 5 749 248 315 68 30 chr4 21537026 21537171 -134092949 + L2a LINE L2 3222 3423 -3 5 749 26 64 0 0 chr4 21538446 21538493 -134091627 + AT_rich Low_complexity Low_complexity 1 47 0 5 749 387 0 0 0 chr4 21539209 21539252 -134090868 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 749 489 257 41 20 chr4 21539715 21539862 -134090258 - L1MA9 LINE L1 0 6312 6163 5 749 384 331 34 111 chr4 21540449 21540829 -134089291 + ORR1E LTR MaLR 9 359 0 5 749 593 256 119 15 chr4 21542911 21543113 -134087007 - Lx8 LINE L1 -2 7471 7249 5 749 578 118 0 0 chr4 21543112 21543205 -134086915 + Lx LINE L1 6562 6654 0 5 749 859 236 78 37 chr4 21543218 21543487 -134086633 - Lx8 LINE L1 -239 7234 6955 5 749 284 314 102 0 chr4 21544598 21544716 -134085404 + MER103 DNA DNA 3 132 -34 6 749 2956 244 383 40 chr4 21545481 21545687 -134084433 - RMER13A LTR ERVK -7 853 581 6 749 186 43 0 0 chr4 21545687 21545710 -134084410 + (G)n Simple_repeat Simple_repeat 1 23 0 6 749 2956 153 65 19 chr4 21545710 21546260 -134083860 - RMER13A LTR ERVK -280 580 1 6 749 810 173 15 0 chr4 21546443 21546576 -134083544 + B1_Mur2 SINE Alu 2 136 -13 6 749 566 12 0 46 chr4 21546577 21546664 -134083456 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 6 749 440 159 11 74 chr4 21546750 21546845 -134083275 - ID_B1 SINE B4 -14 210 122 6 749 411 113 0 0 chr4 21546845 21546907 -134083213 + (TCC)n Simple_repeat Simple_repeat 2 63 0 6 749 653 274 144 5 chr4 21546915 21547102 -134083018 - B3 SINE B2 -3 213 1 6 749 1888 145 78 13 chr4 21547134 21547519 -134082601 + RMER17C LTR ERVK 1 410 0 6 749 1488 174 4 36 chr4 21547604 21547884 -134082236 - ORR1C1 LTR MaLR -105 273 3 6 749 294 244 51 13 chr4 21547890 21547969 -134082151 - PB1D10 SINE Alu -34 83 2 7 749 252 0 0 0 chr4 21549082 21549110 -134081010 + (A)n Simple_repeat Simple_repeat 1 28 0 7 749 260 339 112 11 chr4 21549426 21549605 -134080515 + B4A SINE B4 10 206 -86 7 749 379 250 73 0 chr4 21550794 21550890 -134079230 + B1_Mur4 SINE Alu 48 150 0 7 749 793 222 22 100 chr4 21551850 21552080 -134078040 + B4A SINE B4 2 213 -79 7 749 3144 29 56 0 chr4 21552102 21552477 -134077643 - MTA_Mm LTR MaLR 0 396 1 7 749 244 314 107 49 chr4 21552550 21552774 -134077346 + Lx8 LINE L1 7219 7455 -18 7 749 326 147 15 0 chr4 21552950 21553018 -134077102 + GA-rich Low_complexity Low_complexity 4 72 0 7 749 220 352 0 0 chr4 21554105 21554193 -134075927 + GA-rich Low_complexity Low_complexity 1 88 0 7 749 6382 31 0 0 chr4 21554358 21555091 -134075029 + L1Md_T LINE L1 5850 6582 0 7 749 1471 256 117 85 chr4 21555780 21556463 -134073657 + RMER1B Other Other 7 504 -562 8 749 4386 147 60 7 chr4 21556463 21557075 -134073045 + RMER1A Other Other 259 898 -132 8 749 216 0 0 0 chr4 21557075 21557099 -134073021 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 749 4386 147 60 7 chr4 21557099 21557217 -134072903 + RMER1A Other Other 899 1027 -3 8 749 2772 53 96 0 chr4 21557390 21557746 -134072374 + RLTR10 LTR ERVK 1 390 0 8 749 29 0 0 0 chr4 21557853 21557882 -134072238 + AT_rich Low_complexity Low_complexity 1 29 0 8 749 423 277 23 8 chr4 21558692 21558823 -134071297 - MER20 DNA MER1_type -40 179 47 8 749 582 57 37 19 chr4 21558831 21558938 -134071182 + (CAGAGA)n Simple_repeat Simple_repeat 6 114 0 8 749 249 33 0 0 chr4 21558985 21559015 -134071105 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 749 207 0 0 0 chr4 21559015 21559037 -134071083 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 749 2256 153 57 15 chr4 21560182 21560586 -134069534 + MTC LTR MaLR 1 421 0 8 749 317 221 70 0 chr4 21560624 21560710 -134069410 + Charlie5 DNA MER1_type 36 127 -2497 9 749 266 228 139 102 chr4 21560707 21560981 -134069139 + Charlie5 DNA MER1_type 2234 2517 -107 9 749 5304 173 51 35 chr4 21560987 21562182 -134067938 - Lx2B LINE L1 -1 6999 5854 9 749 2816 66 42 8 chr4 21562182 21562565 -134067555 - MTA_Mm LTR MaLR 0 396 1 9 749 5304 163 50 20 chr4 21562565 21562700 -134067420 - Lx2B LINE L1 -1147 5853 5720 9 749 1004 137 0 0 chr4 21562710 21562856 -134067264 + B1_Mus1 SINE Alu 3 148 0 9 749 380 236 102 60 chr4 21563019 21563186 -134066934 - L1MA8 LINE L1 -28 6263 6090 9 749 531 286 72 40 chr4 21563198 21563420 -134066700 + ORR1E LTR MaLR 4 232 -127 9 749 1103 281 88 17 chr4 21563565 21563974 -134066146 + MTE-int LTR MaLR 1 438 -1142 9 749 304 198 45 128 chr4 21564118 21564251 -134065869 + MT2B LTR ERVL 136 257 -344 9 749 853 124 51 0 chr4 21564158 21564295 -134065825 + B1_Mur4 SINE Alu 6 149 -1 9 749 443 118 13 0 chr4 21564295 21564371 -134065749 + (GGA)n Simple_repeat Simple_repeat 1 77 0 9 749 352 342 65 61 chr4 21564466 21564712 -134065408 + MTE-int LTR MaLR 662 908 -672 9 749 629 350 4 11 chr4 21564719 21564979 -134065141 + MTE-int LTR MaLR 1199 1456 -124 9 749 429 301 116 14 chr4 21564977 21565115 -134065005 + B3 SINE B2 23 174 -42 1 749 256 266 41 81 chr4 21565147 21565270 -134064850 + ORR1E LTR MaLR 10 127 -247 1 749 522 196 0 0 chr4 21565314 21565421 -134064699 + GA-rich Low_complexity Low_complexity 1 107 0 1 749 293 0 0 26 chr4 21565514 21565552 -134064568 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 749 527 183 137 32 chr4 21565553 21565677 -134064443 - B1_Mur4 SINE Alu -12 138 2 1 749 3092 196 43 25 chr4 21565758 21566487 -134063633 - Lx2B LINE L1 -2 6998 6197 1 749 953 215 4 39 chr4 21566487 21566719 -134063401 - MTD LTR MaLR -195 224 1 1 749 782 233 174 0 chr4 21566930 21567183 -134062937 + ORR1D2 LTR MaLR 1 297 -73 1 749 33629 72 11 1 chr4 21567281 21572228 -134057892 + L1Md_F2 LINE L1 584 5585 -298 1 749 7617 68 2 26 chr4 21572229 21573244 -134056876 + L1Md_F2 LINE L1 5587 6582 0 1 749 964 204 70 20 chr4 21574088 21574288 -134055832 + B3 SINE B2 1 210 -6 1 749 21 36 0 0 chr4 21575549 21575577 -134054543 + AT_rich Low_complexity Low_complexity 1 28 0 1 749 417 39 0 0 chr4 21576326 21576377 -134053743 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 749 180 213 13 39 chr4 21576484 21576562 -134053558 + GA-rich Low_complexity Low_complexity 1 76 0 1 749 1371 74 5 73 chr4 21576762 21576967 -134053153 + B2_Mm2 SINE B2 3 193 -2 1 749 987 215 75 0 chr4 21577011 21577211 -134052909 + B3 SINE B2 1 215 -1 1 749 36225 35 1 0 chr4 21577444 21583691 -134046429 + L1Md_T LINE L1 1 5589 -297 1 749 9181 5 0 0 chr4 21583691 21584687 -134045433 + L1Md_T LINE L1 5590 6585 0 1 749 22 0 0 0 chr4 21584927 21584949 -134045171 + AT_rich Low_complexity Low_complexity 1 22 0 1 749 221 313 24 12 chr4 21585207 21585291 -134044829 + L2c LINE L2 2827 2911 -508 1 749 201 334 123 41 chr4 21585394 21585747 -134044373 + L2c LINE L2 3036 3423 -3 1 749 249 33 0 0 chr4 21585902 21585932 -134044188 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 749 492 252 0 98 chr4 21585934 21586097 -134044023 + ID_B1 SINE B4 78 224 0 1 749 933 251 128 17 chr4 21587138 21587482 -134042638 - MTD LTR MaLR -2 417 36 1 749 870 185 0 7 chr4 21587736 21587883 -134042237 + B1_Mur4 SINE Alu 4 149 -1 1 749 198 0 0 0 chr4 21588514 21588536 -134041584 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 749 801 227 108 15 chr4 21588822 21589082 -134041038 + B4A SINE B4 5 288 -4 1 749 232 222 0 18 chr4 21589104 21589159 -134040961 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1 749 343 304 42 47 chr4 21590163 21590353 -134039767 + B3A SINE B2 5 193 -5 1 749 962 138 18 6 chr4 21590416 21590583 -134039537 - Lx3B LINE L1 0 6976 6808 1 749 7036 79 39 14 chr4 21590584 21591816 -134038304 - Lx3B LINE L1 -417 6556 5305 1 749 288 195 98 54 chr4 21592305 21592397 -134037723 + B4 SINE B4 197 292 0 1 749 649 239 170 0 chr4 21593933 21594121 -134035999 - B4A SINE B4 -69 223 4 1 749 2784 52 3 6 chr4 21594424 21594773 -134035347 + L1_Mus1 LINE L1 6220 6567 0 1 749 246 304 83 60 chr4 21595093 21595261 -134034859 + L2c LINE L2 2981 3152 -235 1 749 198 0 0 0 chr4 21595544 21595566 -134034554 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 749 221 0 35 0 chr4 21595633 21595662 -134034458 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 749 304 273 11 64 chr4 21596621 21596715 -134033405 + PB1D10 SINE Alu 2 90 -27 1 749 464 240 9 55 chr4 21596632 21596742 -134033378 + ID_B1 SINE B4 94 198 -26 1 749 444 104 0 0 chr4 21596760 21596827 -134033293 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 749 389 266 11 18 chr4 21597170 21597288 -134032832 + L1MC4a LINE L1 5727 5839 -2043 1 749 282 346 24 59 chr4 21597347 21597516 -134032604 + RSINE1 SINE B4 3 165 0 1 749 183 129 0 0 chr4 21597534 21597565 -134032555 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 749 563 295 0 25 chr4 21597725 21597885 -134032235 + RSINE1 SINE B4 10 165 0 1 749 26 30 0 0 chr4 21597893 21597926 -134032194 + AT_rich Low_complexity Low_complexity 1 33 0 1 749 968 199 39 10 chr4 21597926 21598129 -134031991 + B3 SINE B2 2 210 -6 1 749 266 295 0 87 chr4 21598637 21598741 -134031379 + B4A SINE B4 198 292 0 1 749 225 0 0 0 chr4 21598764 21598789 -134031331 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1 749 1344 301 20 51 chr4 21599049 21599637 -134030483 - L1MA4 LINE L1 -368 5932 5363 1 749 360 0 0 0 chr4 21599840 21599880 -134030240 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 749 1045 82 6 29 chr4 21600850 21601025 -134029095 + Lx LINE L1 6483 6653 -1 1 749 201 293 95 24 chr4 21602233 21602359 -134027761 - MIRb SINE MIR -22 246 108 1 749 1133 82 7 0 chr4 21602520 21602667 -134027453 + B1_Mus1 SINE Alu 1 148 0 1 749 340 169 0 40 chr4 21602768 21602842 -134027278 + PB1D10 SINE Alu 40 110 -7 1 749 243 0 0 0 chr4 21602845 21602872 -134027248 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 749 264 127 0 0 chr4 21603600 21603655 -134026465 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 749 205 184 0 0 chr4 21604359 21604397 -134025723 + GA-rich Low_complexity Low_complexity 1 38 0 1 749 369 62 0 0 chr4 21605976 21606024 -134024096 + (CCG)n Simple_repeat Simple_repeat 3 50 0 1 749 297 89 0 0 chr4 21606442 21606487 -134023633 + (TGG)n Simple_repeat Simple_repeat 1 45 0 1 749 24 0 0 0 chr4 21606514 21606538 -134023582 + GC_rich Low_complexity Low_complexity 1 24 0 1 749 21 0 0 0 chr4 21607943 21607964 -134022156 + AT_rich Low_complexity Low_complexity 1 21 0 1 749 572 213 0 175 chr4 21608338 21608492 -134021628 + B1_Mur1 SINE Alu 1 127 -22 1 749 459 0 0 0 chr4 21608967 21609018 -134021102 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 749 297 0 0 0 chr4 21609018 21609050 -134021070 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 749 342 0 0 0 chr4 21610696 21610734 -134019386 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 749 405 0 0 0 chr4 21611348 21611393 -134018727 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 749 21 36 0 0 chr4 21615809 21615837 -134014283 + GC_rich Low_complexity Low_complexity 1 28 0 1 749 198 0 0 0 chr4 21616425 21616447 -134013673 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 749 342 0 0 0 chr4 21616461 21616499 -134013621 + (T)n Simple_repeat Simple_repeat 1 38 0 1 749 396 0 0 0 chr4 21618216 21618260 -134011860 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 749 384 266 32 0 chr4 21618261 21618355 -134011765 - RSINE1 SINE B4 -24 141 45 1 749 393 243 31 74 chr4 21619131 21619294 -134010826 - L1MB8 LINE L1 -195 5983 5827 1 749 2040 224 129 69 chr4 21619289 21619899 -134010221 - Lx7 LINE L1 -194 7502 6856 1 749 1380 82 16 5 chr4 21619987 21620171 -134009949 - B2_Mm2 SINE B2 -8 187 2 1 749 554 342 22 18 chr4 21620518 21620744 -134009376 + RMER15 LTR ERVL 336 562 -13 1 749 376 212 0 0 chr4 21620826 21620892 -134009228 - B3 SINE B2 -139 77 12 1 749 414 0 0 0 chr4 21620960 21621006 -134009114 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 749 1475 63 11 0 chr4 21621061 21621251 -134008869 + B2_Mm1t SINE B2 1 192 -1 1 749 518 297 27 16 chr4 21621564 21621752 -134008368 + MLT1B LTR MaLR 13 202 -188 1 749 270 374 48 54 chr4 21621871 21622018 -134008102 - MLT1N2 LTR MaLR -299 263 118 1 749 545 174 9 9 chr4 21622023 21622133 -134007987 - RMER1B Other Other -743 323 214 1 749 4283 70 61 0 chr4 21622153 21622726 -134007394 + L1_Mus3 LINE L1 6025 6632 -6 1 749 346 210 18 14 chr4 21622742 21622835 -134007285 + RLTR20B3 LTR ERVK 436 528 0 1 749 2005 259 69 35 chr4 21622870 21623507 -134006613 + RMER1C Other Other 380 1038 -304 1 749 372 274 56 9 chr4 21623518 21623625 -134006495 + MLT1H2 LTR MaLR 74 185 -304 1 749 1220 78 0 0 chr4 21623691 21623857 -134006263 + B2_Mm2 SINE B2 7 172 -23 1 749 2124 240 25 12 chr4 21623867 21624348 -134005772 + Lx6 LINE L1 6955 7441 -19 1 749 189 0 0 0 chr4 21624885 21624906 -134005214 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 749 240 375 10 0 chr4 21625114 21625210 -134004910 + MLT1L LTR MaLR 97 193 -417 1 749 431 302 26 20 chr4 21625370 21625522 -134004598 + 7SK RNA RNA 94 246 -85 1 93 20095 64 9 0 chr4 21625566 21628133 -134001987 + L1Md_F2 LINE L1 2996 5586 -297 1 750 8377 35 6 0 chr4 21628133 21629111 -134001009 + L1Md_F2 LINE L1 5587 6570 -12 1 750 702 199 14 7 chr4 21629272 21629414 -134000706 - B1_Mur1 SINE Alu -6 143 1 1 750 336 311 39 101 chr4 21629414 21629451 -134000669 - B4 SINE B4 -72 220 53 1 750 2142 154 94 20 chr4 21629589 21629928 -134000192 + MTC LTR MaLR 1 358 -63 1 750 189 0 0 0 chr4 21629928 21629949 -134000171 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 750 2142 154 94 20 chr4 21629949 21630001 -134000119 + MTC LTR MaLR 359 421 0 1 750 194 339 57 33 chr4 21630002 21630124 -133999996 - L2 LINE L2 -379 3040 2916 1 750 1412 62 23 0 chr4 21630307 21630484 -133999636 + B2_Mm2 SINE B2 2 182 -13 1 750 392 82 302 84 chr4 21630514 21630633 -133999487 + B2_Mm2 SINE B2 47 191 -4 1 750 201 74 0 0 chr4 21630711 21630738 -133999382 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1 750 410 340 114 52 chr4 21630751 21631625 -133998495 - L2 LINE L2 -770 2649 1721 1 750 192 289 60 30 chr4 21631686 21631786 -133998334 - MIR3 SINE MIR -30 178 76 1 750 239 269 0 15 chr4 21632114 21632182 -133997938 - L1M3 LINE L1 -260 5920 5854 1 750 2029 164 8 29 chr4 21632589 21632972 -133997148 - RLTR14 LTR ERV1 -2 380 6 1 750 578 294 67 28 chr4 21633139 21633460 -133996660 - RLTR14-int LTR ERV1 -183 5134 4894 1 750 2207 173 32 10 chr4 21633839 21634241 -133995879 + MTC LTR MaLR 1 411 -10 1 750 307 260 0 14 chr4 21634300 21634374 -133995746 - RLTR14-int LTR ERV1 -731 4586 4514 1 750 419 278 58 17 chr4 21635829 21636001 -133994119 - RLTR14-int LTR ERV1 -2649 2668 2490 1 750 200 94 31 0 chr4 21636210 21636242 -133993878 + (CAG)n Simple_repeat Simple_repeat 3 35 0 1 750 358 353 41 16 chr4 21636605 21636847 -133993273 - MMERGLN-int LTR ERV1 -3670 3886 3639 2 750 396 0 0 0 chr4 21636951 21636995 -133993125 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 750 888 169 0 7 chr4 21637000 21637143 -133992977 - B1_Mur4 SINE Alu -7 143 2 2 750 432 202 32 128 chr4 21637144 21637331 -133992789 - RLTR14-int LTR ERV1 -4211 1106 938 1 750 1103 247 49 102 chr4 21637398 21637907 -133992213 - RLTR14-int LTR ERV1 -4389 928 447 1 750 618 233 185 33 chr4 21638235 21638578 -133991542 - RLTR14-int LTR ERV1 -4922 395 1 1 750 514 221 70 9 chr4 21638578 21638692 -133991428 - RLTR14 LTR ERV1 0 382 262 1 750 3810 170 20 128 chr4 21638699 21639706 -133990414 - RMER21A LTR ERV1 -49 898 1 2 750 1169 158 51 51 chr4 21639706 21639959 -133990161 - RLTR14 LTR ERV1 -129 253 1 1 750 254 278 97 0 chr4 21640027 21640099 -133990021 + ID4 SINE ID 4 82 -1 2 750 3391 98 10 0 chr4 21641341 21641822 -133988298 + Lx2 LINE L1 5626 6111 -886 2 750 2729 67 66 16 chr4 21641867 21642244 -133987876 + MTA_Mm LTR MaLR 1 396 0 2 750 796 279 60 64 chr4 21642443 21642624 -133987496 + Charlie1a DNA MER1_type 714 898 -557 2 750 225 314 75 9 chr4 21642624 21642730 -133987390 - PB1D10 SINE Alu -2 115 3 2 750 796 279 60 64 chr4 21642730 21642754 -133987366 + Charlie1a DNA MER1_type 899 911 -544 2 750 237 65 0 0 chr4 21642754 21642785 -133987335 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 750 1079 86 0 7 chr4 21642789 21642929 -133987191 - B1_Mm SINE Alu -7 140 2 2 750 796 279 60 64 chr4 21642929 21643200 -133986920 + Charlie1a DNA MER1_type 912 1194 -261 2 750 1121 88 0 0 chr4 21643402 21643550 -133986570 + B1_Mus1 SINE Alu 1 148 0 2 750 450 253 13 64 chr4 21644408 21644564 -133985556 - RLTR26 LTR ERVK -1 641 494 2 750 2386 194 30 28 chr4 21644562 21645094 -133985026 - RLTR26 LTR ERVK -109 533 1 2 750 598 246 41 107 chr4 21645159 21645477 -133984643 + RMER10A LTR ERVL 121 417 -25 2 750 1961 133 90 35 chr4 21645494 21645861 -133984259 - ORR1B1 LTR MaLR -7 387 1 2 750 1931 197 31 0 chr4 21646011 21646361 -133983759 - RMER1A Other Other -270 760 400 2 750 490 241 44 15 chr4 21646518 21646653 -133983467 - B1_Mur1 SINE Alu -5 144 6 2 750 491 281 31 8 chr4 21646686 21646815 -133983305 + ID_B1 SINE B4 2 133 -91 2 750 3221 58 2 8 chr4 21646982 21647380 -133982740 - MTA_Mm LTR MaLR 0 396 1 2 750 490 247 90 45 chr4 21647455 21647633 -133982487 - RLTR28B LTR ERVL -295 186 1 2 750 381 305 0 0 chr4 21647633 21647728 -133982392 + ID_B1 SINE B4 130 224 0 2 750 1732 182 88 17 chr4 21647919 21648326 -133981794 - RMER10A LTR ERVL -6 436 1 2 750 745 200 132 39 chr4 21648435 21648617 -133981503 + Lx8 LINE L1 6764 6962 -511 2 750 926 212 120 98 chr4 21648622 21649040 -133981080 - RMER10A LTR ERVL -15 427 1 2 750 1158 74 0 0 chr4 21649067 21649215 -133980905 + B1_Mus1 SINE Alu 1 148 0 2 750 352 68 0 0 chr4 21649220 21649264 -133980856 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 750 738 176 23 6 chr4 21649264 21649435 -133980685 + GA-rich Low_complexity Low_complexity 4 177 0 2 750 1487 69 5 0 chr4 21649468 21649657 -133980463 + B2_Mm1t SINE B2 2 191 -2 2 750 3357 167 61 31 chr4 21649671 21650343 -133979777 - RLTR17 LTR ERVK 0 692 1 2 750 291 257 187 19 chr4 21650415 21650522 -133979598 + Lx8 LINE L1 7151 7275 -198 2 750 372 22 0 0 chr4 21650539 21650584 -133979536 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 750 675 104 9 0 chr4 21650643 21650749 -133979371 + B1_Mus2 SINE Alu 41 147 0 2 750 372 212 37 24 chr4 21650835 21650917 -133979203 + B1_Mur4 SINE Alu 3 85 -65 2 750 333 307 56 120 chr4 21650979 21651212 -133978908 + Arthur1C DNA Tip100 28 245 -118 2 750 651 197 23 0 chr4 21651303 21651435 -133978685 + B3A SINE B2 2 136 -62 2 750 254 241 0 0 chr4 21651610 21651664 -133978456 + ID_B1 SINE B4 102 155 -69 2 750 1129 239 140 11 chr4 21651686 21652042 -133978078 + MTD LTR MaLR 18 419 0 2 750 501 85 9 190 chr4 21652097 21652137 -133977983 - B1_Mur4 SINE Alu -13 137 110 2 750 1692 36 0 0 chr4 21652137 21652329 -133977791 - B2_Mm1t SINE B2 0 193 2 2 750 501 85 9 190 chr4 21652329 21652404 -133977716 - B1_Mur4 SINE Alu -41 109 43 2 750 257 43 0 146 chr4 21652355 21652410 -133977710 - 4.5SRNA scRNA scRNA -8 86 40 2 750 415 129 155 0 chr4 21652443 21652598 -133977522 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 2 750 251 164 32 36 chr4 21652600 21652662 -133977458 - B1_Mus2 SINE Alu -90 60 1 2 750 645 219 8 0 chr4 21652678 21652797 -133977323 + PB1D9 SINE Alu 1 120 0 2 750 219 69 0 0 chr4 21652797 21652826 -133977294 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 2 750 1617 42 16 0 chr4 21652998 21653190 -133976930 + B2_Mm2 SINE B2 1 195 0 2 750 1217 42 0 0 chr4 21653204 21653347 -133976773 + B1_Mm SINE Alu 2 144 -3 2 750 180 0 0 0 chr4 21653347 21653367 -133976753 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 750 21 0 0 0 chr4 21653983 21654004 -133976116 + AT_rich Low_complexity Low_complexity 1 21 0 2 750 492 179 80 64 chr4 21655607 21655732 -133974388 - B1_Mus1 SINE Alu -11 137 11 2 750 254 247 0 158 chr4 21655649 21655750 -133974370 - MT2B LTR ERVL -359 242 158 2 750 396 0 0 0 chr4 21657129 21657173 -133972947 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 750 472 254 16 32 chr4 21657185 21657311 -133972809 + B1_Mur3 SINE Alu 1 124 -25 2 750 1108 88 0 0 chr4 21657956 21658103 -133972017 + B1_Mus1 SINE Alu 2 148 0 2 750 5163 17 0 0 chr4 21658114 21658692 -133971428 + L1Md_A LINE L1 6005 6582 0 2 750 180 0 0 0 chr4 21658715 21658735 -133971385 + (A)n Simple_repeat Simple_repeat 1 20 0 2 750 612 174 136 24 chr4 21658789 21658954 -133971166 - B3 SINE B2 0 216 50 2 750 186 43 0 0 chr4 21659556 21659579 -133970541 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 750 402 195 0 0 chr4 21659757 21659839 -133970281 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 750 211 205 0 0 chr4 21660491 21660530 -133969590 - MIR SINE MIR -115 147 109 2 750 782 199 0 46 chr4 21660617 21660770 -133969350 + B1_Mur2 SINE Alu 2 147 -2 2 750 274 263 20 20 chr4 21661498 21661599 -133968521 - Lx7 LINE L1 -16 7680 7580 2 750 246 280 103 20 chr4 21661608 21661754 -133968366 - Lx7 LINE L1 -285 7411 7254 2 750 22 80 0 0 chr4 21661952 21662002 -133968118 + AT_rich Low_complexity Low_complexity 1 50 0 2 750 277 229 0 54 chr4 21662354 21662428 -133967692 - BC1_Mm scRNA scRNA -81 71 2 2 750 413 242 40 0 chr4 21662807 21662906 -133967214 + ID_B1 SINE B4 114 216 -8 2 750 207 210 0 16 chr4 21662933 21662996 -133967124 + T-rich Low_complexity Low_complexity 5 66 0 2 750 1151 68 7 0 chr4 21663277 21663423 -133966697 - B1_Mus2 SINE Alu 0 147 1 2 750 361 164 15 0 chr4 21663425 21663492 -133966628 - PB1D9 SINE Alu 0 120 53 2 750 636 243 119 22 chr4 21663543 21663728 -133966392 - B3A SINE B2 0 216 14 2 750 486 0 0 0 chr4 21663980 21664034 -133966086 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 750 560 307 35 47 chr4 21664079 21664335 -133965785 - B4A SINE B4 -4 288 36 2 750 762 140 57 29 chr4 21664399 21664539 -133965581 + B1_Mur2 SINE Alu 5 148 -1 2 750 257 320 39 23 chr4 21664661 21664789 -133965331 - ORR1E LTR MaLR -151 208 79 2 750 383 241 35 41 chr4 21664961 21665125 -133964995 - B3A SINE B2 0 195 34 2 750 1089 48 0 0 chr4 21665128 21665273 -133964847 + B1_Mus2 SINE Alu 3 147 0 2 750 291 216 40 0 chr4 21665317 21665391 -133964729 - MLT1B LTR MaLR -285 105 29 2 750 391 206 71 20 chr4 21665544 21665643 -133964477 + PB1D9 SINE Alu 4 107 -13 2 750 363 23 0 0 chr4 21665646 21665690 -133964430 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 750 409 144 91 33 chr4 21665799 21665898 -133964222 - B1_Mm SINE Alu -8 112 7 2 750 258 238 100 0 chr4 21665831 21665911 -133964209 - ID_B1 SINE B4 -63 161 74 2 750 1026 139 35 0 chr4 21666410 21666582 -133963538 + B2_Mm1t SINE B2 2 179 -14 2 750 435 91 319 26 chr4 21666648 21666761 -133963359 + B2_Mm2 SINE B2 47 192 -3 2 750 611 222 67 0 chr4 21666815 21666950 -133963170 + B1_Mur1 SINE Alu 6 149 0 2 750 1184 81 6 0 chr4 21667160 21667321 -133962799 - B2_Mm1t SINE B2 -29 164 3 2 750 264 30 0 0 chr4 21667550 21667583 -133962537 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 750 1239 41 0 0 chr4 21668222 21668369 -133961751 + B1_Mus2 SINE Alu 1 147 0 2 750 225 0 0 0 chr4 21668369 21668394 -133961726 + (A)n Simple_repeat Simple_repeat 1 25 0 2 750 539 159 14 86 chr4 21668460 21668584 -133961536 - B1_Mm SINE Alu 0 147 1 2 750 183 42 0 0 chr4 21668618 21668642 -133961478 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 750 236 353 15 0 chr4 21668658 21668726 -133961394 + tRNA-Ala-GCY_ tRNA tRNA 6 74 -1 2 750 568 210 0 25 chr4 21668802 21668924 -133961196 + PB1D9 SINE Alu 2 120 0 2 750 25 75 0 0 chr4 21668971 21669024 -133961096 + AT_rich Low_complexity Low_complexity 1 53 0 2 750 213 224 0 0 chr4 21671122 21671180 -133958940 + CT-rich Low_complexity Low_complexity 1 58 0 2 750 342 0 0 0 chr4 21671242 21671280 -133958840 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 750 982 47 0 0 chr4 21671281 21671408 -133958712 - B1_Mus1 SINE Alu -12 136 10 2 750 879 234 25 146 chr4 21671413 21671563 -133958557 - B3 SINE B2 -5 211 70 2 750 1191 54 0 0 chr4 21671563 21671710 -133958410 + B1_Mm SINE Alu 1 147 0 2 750 879 234 25 146 chr4 21671710 21671799 -133958321 - B3 SINE B2 -147 69 1 2 750 974 137 176 21 chr4 21671905 21672092 -133958028 - B3 SINE B2 0 216 1 2 750 547 233 57 16 chr4 21672374 21672496 -133957624 - B4 SINE B4 -19 273 147 2 750 878 195 43 43 chr4 21672523 21672732 -133957388 - B3 SINE B2 -5 211 3 2 750 1312 225 20 16 chr4 21672849 21673161 -133956959 - RLTR18 LTR ERVK -209 303 2 2 750 541 241 7 14 chr4 21673585 21673728 -133956392 - B1_Mur1 SINE Alu -6 143 2 2 750 198 0 0 0 chr4 21673940 21673962 -133956158 + (TTTAA)n Simple_repeat Simple_repeat 5 26 0 2 750 195 129 0 0 chr4 21674847 21674878 -133955242 + (T)n Simple_repeat Simple_repeat 1 31 0 3 750 27 29 0 0 chr4 21675654 21675688 -133954432 + AT_rich Low_complexity Low_complexity 1 34 0 3 750 209 213 0 0 chr4 21676821 21676868 -133953252 + T-rich Low_complexity Low_complexity 1 47 0 3 750 22 35 0 0 chr4 21677084 21677113 -133953007 + AT_rich Low_complexity Low_complexity 1 29 0 3 750 366 281 29 7 chr4 21677235 21677375 -133952745 - L1MC5 LINE L1 -530 7431 7289 3 750 764 213 116 24 chr4 21677472 21677766 -133952354 + MER33 DNA MER1_type 4 324 0 3 750 223 250 24 200 chr4 21678191 21678316 -133951804 + PB1 SINE Alu 18 120 -7 3 750 427 257 9 28 chr4 21678210 21678318 -133951802 + ID_B1 SINE B4 113 218 -6 3 750 198 0 0 0 chr4 21678369 21678391 -133951729 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 3 750 1043 83 14 7 chr4 21678414 21678560 -133951560 - B1_Mus1 SINE Alu 0 148 2 3 750 453 227 49 6 chr4 21679207 21679366 -133950754 + B3A SINE B2 2 210 -6 3 750 377 333 26 0 chr4 21679641 21679755 -133950365 - PB1D10 SINE Alu 0 117 1 3 750 752 174 145 47 chr4 21679781 21679974 -133950146 + B3 SINE B2 2 213 -3 3 750 713 209 43 0 chr4 21679989 21680128 -133949992 + B1_Mus2 SINE Alu 1 145 -2 3 750 24 32 0 0 chr4 21680141 21680172 -133949948 + AT_rich Low_complexity Low_complexity 1 31 0 3 750 626 286 28 80 chr4 21680181 21680224 -133949896 + B3 SINE B2 2 43 -173 3 750 1576 48 0 0 chr4 21680224 21680412 -133949708 - B2_Mm1t SINE B2 -4 189 2 3 750 626 286 28 80 chr4 21680412 21680581 -133949539 + B3 SINE B2 44 203 -13 3 750 526 197 25 17 chr4 21681280 21681297 -133948823 - RMER10A LTR ERVL -1 441 422 3 750 1038 148 0 0 chr4 21681297 21681473 -133948647 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 3 750 1355 204 108 10 chr4 21681473 21681858 -133948262 - RMER10A LTR ERVL -21 421 1 3 750 1112 42 0 47 chr4 21681887 21682036 -133948084 + B1_Mus1 SINE Alu 1 142 -6 3 750 183 80 0 0 chr4 21682039 21682064 -133948056 + (A)n Simple_repeat Simple_repeat 1 25 0 3 750 517 245 0 9 chr4 21682186 21682297 -133947823 - PB1D10 SINE Alu -7 110 1 3 750 1072 160 55 28 chr4 21682432 21682650 -133947470 + ORR1B1 LTR MaLR 4 227 -167 3 750 1247 113 0 113 chr4 21682630 21682869 -133947251 - ORR1A3 LTR MaLR -112 214 3 3 750 1275 178 4 22 chr4 21682869 21683073 -133947047 + ORR1B2 LTR MaLR 168 367 0 3 750 510 292 77 0 chr4 21683135 21683265 -133946855 - ID_B1 SINE B4 -3 221 82 3 750 1290 97 54 0 chr4 21683288 21683473 -133946647 - B2_Mm2 SINE B2 0 195 1 3 750 718 170 29 22 chr4 21683511 21683649 -133946471 + B1_Mur1 SINE Alu 10 148 -1 3 750 364 282 219 33 chr4 21683759 21683942 -133946178 + MER58B DNA MER1_type 10 226 -115 3 750 456 19 0 0 chr4 21684190 21684243 -133945877 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 750 408 306 41 0 chr4 21684872 21684970 -133945150 - PB1D9 SINE Alu -5 115 14 3 750 1129 35 0 0 chr4 21685081 21685223 -133944897 - B1_Mus1 SINE Alu -1 147 6 3 750 410 174 63 94 chr4 21685115 21685242 -133944878 - MT2B LTR ERVL -337 264 142 3 750 445 48 0 0 chr4 21685724 21685786 -133944334 + L1Md_T LINE L1 6521 6582 0 3 750 216 296 41 27 chr4 21685809 21685830 -133944290 - ID_B1 SINE B4 -75 149 126 3 750 231 103 0 0 chr4 21685830 21685869 -133944251 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 750 216 296 41 27 chr4 21685869 21685920 -133944200 - ID_B1 SINE B4 -99 125 77 3 750 212 216 39 19 chr4 21686059 21686111 -133944009 - PB1D9 SINE Alu 0 120 68 3 750 1034 221 15 0 chr4 21686127 21686326 -133943794 - B3 SINE B2 -13 203 2 3 750 286 260 52 0 chr4 21686376 21686453 -133943667 - ID4_ SINE ID -2 81 1 3 750 343 285 120 23 chr4 21687064 21687197 -133942923 + MER21B LTR ERV1 28 173 -690 3 750 2045 124 85 118 chr4 21687198 21687467 -133942653 + RMER6B LTR ERVK 1 296 -165 3 750 1453 48 26 11 chr4 21687467 21687656 -133942464 - B2_Mm1t SINE B2 0 193 2 3 750 2045 124 85 118 chr4 21687656 21687677 -133942443 + RMER6B LTR ERVK 297 297 -164 3 750 1322 89 10 20 chr4 21687677 21687872 -133942248 - B2_Mm1t SINE B2 0 193 1 3 750 2045 124 85 118 chr4 21687872 21688029 -133942091 + RMER6B LTR ERVK 297 434 -27 3 750 520 316 96 70 chr4 21688111 21688537 -133941583 + MER21B LTR ERV1 275 711 -152 3 750 253 273 0 0 chr4 21688608 21688663 -133941457 + tRNA-Ala-GCG tRNA tRNA 1 55 -20 3 750 782 259 151 4 chr4 21688852 21689077 -133941043 - MTD LTR MaLR -77 342 85 3 750 302 299 41 20 chr4 21689424 21689571 -133940549 + L1M5 LINE L1 5274 5423 -2459 3 750 216 0 0 0 chr4 21689603 21689627 -133940493 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 750 4432 43 2 0 chr4 21689629 21690161 -133939959 - L1Md_F2 LINE L1 -19 6563 6031 3 750 3959 50 0 0 chr4 21690161 21690763 -133939357 + L1Md_F2 LINE L1 5364 5965 -619 3 750 368 310 42 105 chr4 21690763 21690954 -133939166 + B4A SINE B4 43 221 -71 3 750 956 112 0 7 chr4 21690824 21690959 -133939161 + B1_Mus1 SINE Alu 14 147 -1 3 750 1549 185 19 31 chr4 21691037 21691361 -133938759 + ORR1A3 LTR MaLR 3 322 -4 3 750 477 233 22 0 chr4 21691432 21691522 -133938598 + B3 SINE B2 1 92 -124 3 750 785 105 186 0 chr4 21691559 21691683 -133938437 + B1_Mus1 SINE Alu 2 148 0 3 750 250 188 62 0 chr4 21692076 21692156 -133937964 - L1MC LINE L1 -2066 5816 5732 3 750 1222 54 0 0 chr4 21692171 21692318 -133937802 + B1_Mus1 SINE Alu 1 147 -1 3 750 303 292 110 31 chr4 21692848 21693039 -133937081 + L1M5 LINE L1 5617 5822 -302 3 750 180 0 0 0 chr4 21693774 21693794 -133936326 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 3 750 329 209 0 0 chr4 21694454 21694521 -133935599 - MLT1D LTR MaLR 0 627 561 3 750 23 33 0 0 chr4 21694545 21694575 -133935545 + AT_rich Low_complexity Low_complexity 1 30 0 3 750 442 285 59 152 chr4 21694576 21694768 -133935352 - MLT1D LTR MaLR -207 298 114 3 750 1199 41 7 0 chr4 21694768 21694913 -133935207 - B1_Mus2 SINE Alu 0 147 2 3 750 442 285 59 152 chr4 21694913 21694966 -133935154 - MLT1D LTR MaLR -392 113 75 3 750 1537 168 173 3 chr4 21694966 21695289 -133934831 + ORR1C1 LTR MaLR 1 378 0 3 750 442 285 59 152 chr4 21695289 21695332 -133934788 - MLT1D LTR MaLR -431 74 36 3 750 538 206 20 20 chr4 21695629 21695728 -133934392 - B4A SINE B4 -5 287 189 3 750 859 309 5 19 chr4 21695742 21695950 -133934170 + B3 SINE B2 6 210 -6 3 750 332 316 119 45 chr4 21695977 21696153 -133933967 - B4A SINE B4 -103 189 1 3 750 4830 151 11 147 chr4 21696332 21697706 -133932414 - ORR1B1-int LTR MaLR 0 1963 15 3 750 1478 148 3 92 chr4 21697706 21697886 -133932234 - ORR1B1 LTR MaLR -67 279 100 3 750 1461 46 12 0 chr4 21697886 21698059 -133932061 + B2_Mm1a SINE B2 1 175 -18 3 750 1478 148 3 92 chr4 21698059 21698071 -133932049 - ORR1B1 LTR MaLR -247 99 94 3 750 1404 102 0 5 chr4 21698071 21698267 -133931853 + B2_Mm2 SINE B2 1 195 0 3 750 1478 148 3 92 chr4 21698267 21698378 -133931742 - ORR1B1 LTR MaLR -253 93 2 3 750 383 165 35 207 chr4 21698378 21698515 -133931605 - MT2B LTR ERVL -336 265 154 3 750 337 218 146 22 chr4 21698531 21698620 -133931500 - B1_Mur3 SINE Alu -47 102 3 3 750 3217 164 93 94 chr4 21698620 21699356 -133930764 - ORR1B1-int LTR MaLR -1228 735 1 3 750 1969 149 50 20 chr4 21699356 21699699 -133930421 - ORR1B1 LTR MaLR 0 394 42 3 750 360 258 29 49 chr4 21699706 21699808 -133930312 - RSINE1 SINE B4 -190 102 3 3 750 240 304 0 0 chr4 21699815 21699884 -133930236 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 750 258 259 141 0 chr4 21699905 21699990 -133930130 + MTE2a LTR MaLR 1 97 -282 3 750 3550 156 49 39 chr4 21700025 21700124 -133929996 - RMER6A LTR ERVK 0 756 663 3 750 3360 28 2 17 chr4 21700124 21700526 -133929594 - MTA_Mm LTR MaLR 0 396 1 3 750 3550 156 49 39 chr4 21700526 21701121 -133928999 - RMER6A LTR ERVK -94 662 55 3 750 26 0 0 0 chr4 21701650 21701676 -133928444 + AT_rich Low_complexity Low_complexity 1 26 0 3 750 1016 85 0 0 chr4 21701749 21701878 -133928242 + B1_Mus1 SINE Alu 2 130 -18 3 750 2535 70 0 23 chr4 21701878 21702268 -133927852 + L1_Mus1 LINE L1 6225 6567 0 3 750 29 28 0 0 chr4 21702773 21702809 -133927311 + AT_rich Low_complexity Low_complexity 1 36 0 3 750 886 98 0 0 chr4 21702816 21702938 -133927182 - B2_Mm2 SINE B2 -73 122 1 3 750 220 244 121 12 chr4 21703861 21703944 -133926176 + MIR SINE MIR 90 181 -81 3 750 225 94 0 0 chr4 21704366 21704398 -133925722 + (A)n Simple_repeat Simple_repeat 1 32 0 3 750 393 253 0 0 chr4 21704422 21704509 -133925611 + MER68 LTR ERVL 24 110 -453 3 750 742 250 40 27 chr4 21705939 21706140 -133923980 + B3A SINE B2 2 187 -8 3 750 700 179 33 73 chr4 21706154 21706305 -133923815 + B1_Mus2 SINE Alu 3 147 0 3 750 1136 73 0 0 chr4 21706485 21706622 -133923498 - B1_Mm SINE Alu -9 138 2 3 750 251 252 125 68 chr4 21707087 21707247 -133922873 - MLT1A LTR MaLR -198 167 4 3 750 256 179 107 0 chr4 21707871 21707927 -133922193 - B1F1 SINE Alu -7 142 81 3 750 32 43 0 0 chr4 21708227 21708273 -133921847 + AT_rich Low_complexity Low_complexity 1 46 0 3 750 1132 68 0 13 chr4 21708273 21708423 -133921697 - B1_Mus1 SINE Alu 0 148 1 3 750 1667 204 106 2 chr4 21708446 21708819 -133921301 - MTD LTR MaLR -21 398 1 3 750 419 232 81 0 chr4 21709161 21709260 -133920860 - RSINE1 SINE B4 -56 109 3 3 750 848 152 7 7 chr4 21709290 21709429 -133920691 + B1_Mus2 SINE Alu 9 147 0 3 750 272 287 25 85 chr4 21709523 21709641 -133920479 - MLT1L LTR MaLR -204 406 296 3 750 270 0 0 0 chr4 21710168 21710198 -133919922 + (A)n Simple_repeat Simple_repeat 1 30 0 3 750 406 264 64 0 chr4 21710492 21710602 -133919518 + PB1D10 SINE Alu 1 117 0 3 750 881 200 86 15 chr4 21710650 21710848 -133919272 + B3 SINE B2 4 215 -1 3 750 534 232 87 1 chr4 21710876 21711009 -133919111 + B1_Mur2 SINE Alu 6 145 -2 3 750 461 222 102 0 chr4 21711039 21711147 -133918973 - B1_Mur4 SINE Alu 0 150 32 3 750 2342 114 0 3 chr4 21711168 21711494 -133918626 - ORR1A2 LTR MaLR -2 325 1 3 750 284 188 0 15 chr4 21711494 21711559 -133918561 + GA-rich Low_complexity Low_complexity 2 65 0 3 750 269 299 61 10 chr4 21712074 21712172 -133917948 - RSINE1 SINE B4 -60 105 3 3 750 342 187 80 0 chr4 21712276 21712351 -133917769 - ID4_ SINE ID 0 83 3 4 750 1186 259 82 15 chr4 21713213 21713554 -133916566 - ORR1D2 LTR MaLR 0 370 7 4 750 703 238 118 12 chr4 21713720 21713890 -133916230 + B3 SINE B2 29 216 0 4 750 2919 6 0 0 chr4 21713902 21714229 -133915891 + L1Md_T LINE L1 6256 6582 0 4 750 187 149 0 75 chr4 21714743 21714823 -133915297 + T-rich Low_complexity Low_complexity 1 74 0 4 750 1212 54 0 13 chr4 21714823 21714972 -133915148 - B1_Mus2 SINE Alu 0 147 1 4 750 744 202 210 17 chr4 21715019 21715200 -133914920 - B3 SINE B2 0 216 1 4 750 890 194 150 11 chr4 21715211 21715477 -133914643 - Lx9 LINE L1 -35 7609 7307 4 750 1205 31 176 0 chr4 21715507 21715666 -133914454 - B2_Mm1t SINE B2 -5 188 2 4 750 255 236 90 45 chr4 21715939 21716050 -133914070 - Charlie1b DNA MER1_type -150 373 258 4 750 592 184 13 64 chr4 21716123 21716280 -133913840 - B1_Mur4 SINE Alu 0 150 2 4 750 243 0 0 0 chr4 21716979 21717006 -133913114 + (A)n Simple_repeat Simple_repeat 1 27 0 4 750 588 278 64 8 chr4 21717059 21717309 -133912811 + L1MC1 LINE L1 5951 6214 -119 4 750 1197 166 121 35 chr4 21718155 21718532 -133911588 - MTC LTR MaLR -8 413 6 4 750 2440 154 9 31 chr4 21718539 21718961 -133911159 - MTC LTR MaLR -8 413 1 4 750 210 71 0 0 chr4 21719054 21719082 -133911038 + (A)n Simple_repeat Simple_repeat 1 28 0 4 750 292 235 0 68 chr4 21719182 21719255 -133910865 - B4A SINE B4 -139 153 86 4 750 396 0 0 0 chr4 21719865 21719909 -133910211 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 750 653 226 110 0 chr4 21719914 21720060 -133910060 - B3A SINE B2 -36 162 1 4 750 231 88 0 0 chr4 21720066 21720100 -133910020 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 4 750 32 0 0 0 chr4 21721192 21721224 -133908896 + AT_rich Low_complexity Low_complexity 1 32 0 4 750 518 239 75 23 chr4 21721338 21721471 -133908649 + ID_B1 SINE B4 3 142 -82 4 750 716 281 12 0 chr4 21722199 21722366 -133907754 - ID_B1 SINE B4 -2 222 54 4 750 426 258 146 15 chr4 21722490 21722620 -133907500 + B1_Mur1 SINE Alu 3 149 0 4 750 802 167 0 46 chr4 21722882 21723033 -133907087 + B1_Mur2 SINE Alu 1 144 -5 4 750 1123 209 5 14 chr4 21723067 21723276 -133906844 + B3 SINE B2 1 207 -9 4 750 550 258 16 0 chr4 21723408 21723536 -133906584 - ID_B1 SINE B4 -4 220 91 4 750 26 30 0 0 chr4 21724893 21724926 -133905194 + AT_rich Low_complexity Low_complexity 1 33 0 4 750 382 293 52 32 chr4 21724927 21725082 -133905038 - RSINE1 SINE B4 -3 162 5 4 750 228 250 16 62 chr4 21725129 21725193 -133904927 + MER90 LTR ERV1 11 71 -504 4 750 1168 62 0 0 chr4 21725386 21725531 -133904589 + B1_Mm SINE Alu 3 147 0 4 750 1953 184 25 33 chr4 21726318 21726712 -133903408 - RMER10B LTR ERVL 0 398 8 4 750 455 234 188 52 chr4 21726853 21727195 -133902925 + L1MA4 LINE L1 5586 5965 -332 4 750 715 299 55 108 chr4 21728222 21728601 -133901519 - ORR1E LTR MaLR 0 359 1 4 750 501 338 19 19 chr4 21728641 21728795 -133901325 + B3A SINE B2 7 160 -38 4 750 324 48 0 0 chr4 21728801 21728843 -133901277 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 750 857 234 29 5 chr4 21728891 21729097 -133901023 + B3 SINE B2 1 211 -5 4 750 804 200 27 20 chr4 21729146 21729294 -133900826 + B1_Mur2 SINE Alu 1 149 0 4 750 470 275 11 81 chr4 21729411 21729585 -133900535 + RSINE1 SINE B4 3 164 -1 4 750 558 151 49 0 chr4 21729756 21729863 -133900257 + B3 SINE B2 2 119 -76 4 750 332 247 26 13 chr4 21729926 21730004 -133900116 - HAL1-3A_ME LINE L1 -805 2053 1975 4 750 255 61 0 0 chr4 21730054 21730087 -133900033 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 4 750 865 263 132 15 chr4 21730090 21730614 -133899506 - L1M2 LINE L1 -869 5271 4693 4 750 899 133 133 0 chr4 21730837 21730995 -133899125 + B2_Mm2 SINE B2 2 180 -15 4 750 190 273 200 22 chr4 21731033 21731123 -133898997 + MIRc SINE MIR 48 153 -115 4 750 323 294 133 20 chr4 21731703 21731801 -133898319 + AluG_3 SINE Alu 143 214 -97 4 750 624 193 0 0 chr4 21731803 21731917 -133898203 + PB1D9 SINE Alu 1 114 -6 4 750 193 196 18 18 chr4 21731917 21731974 -133898146 + GA-rich Low_complexity Low_complexity 2 58 0 4 750 282 231 19 0 chr4 21732735 21732787 -133897333 - PB1D7 SINE Alu -6 114 62 4 750 234 0 0 0 chr4 21732993 21733019 -133897101 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 4 750 999 120 0 7 chr4 21733021 21733164 -133896956 - B1_Mus1 SINE Alu -5 143 2 4 750 23 0 0 0 chr4 21733326 21733349 -133896771 + AT_rich Low_complexity Low_complexity 1 23 0 4 750 729 192 196 11 chr4 21733596 21733775 -133896345 + B3 SINE B2 3 214 -2 4 750 384 210 37 65 chr4 21733804 21733911 -133896209 + PB1D10 SINE Alu 6 109 -8 4 750 611 125 206 48 chr4 21735313 21735439 -133894681 - B1_Mur4 SINE Alu -4 146 1 4 750 23 33 0 0 chr4 21735450 21735480 -133894640 + AT_rich Low_complexity Low_complexity 1 30 0 4 750 236 21 104 0 chr4 21735537 21735585 -133894535 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 4 750 39 22 0 0 chr4 21735734 21735780 -133894340 + AT_rich Low_complexity Low_complexity 1 46 0 4 750 816 219 17 17 chr4 21736175 21736356 -133893764 + B3A SINE B2 1 181 -17 4 750 308 364 79 50 chr4 21736445 21736723 -133893397 - B4A SINE B4 -6 286 1 4 750 350 248 57 47 chr4 21737513 21737619 -133892501 - PB1D10 SINE Alu -8 109 3 4 750 409 278 25 38 chr4 21738023 21738180 -133891940 + Lx8 LINE L1 6960 7114 -359 4 750 392 212 150 0 chr4 21738506 21738619 -133891501 + U17 snRNA snRNA 29 158 -49 4 750 258 208 0 0 chr4 21738806 21738854 -133891266 + U17 snRNA snRNA 160 207 0 4 750 568 238 155 11 chr4 21739444 21739618 -133890502 + B3 SINE B2 1 199 -17 4 750 855 184 0 0 chr4 21740073 21740220 -133889900 - B1_Mus1 SINE Alu -1 147 1 4 750 458 357 51 8 chr4 21740430 21740684 -133889436 - Lx8 LINE L1 -398 7075 6811 4 750 877 162 7 0 chr4 21741230 21741366 -133888754 + B1_Mur2 SINE Alu 1 137 -12 4 750 541 131 12 0 chr4 21741677 21741761 -133888359 + B1_Mur4 SINE Alu 1 85 -65 4 750 411 288 0 0 chr4 21742162 21742242 -133887878 + RSINE1 SINE B4 6 85 -80 4 750 222 176 98 0 chr4 21743245 21743296 -133886824 - PB1D10 SINE Alu -27 90 35 4 750 850 192 19 68 chr4 21744318 21744525 -133885595 + B3 SINE B2 2 198 -18 4 750 26 64 0 0 chr4 21744534 21744581 -133885539 + AT_rich Low_complexity Low_complexity 1 47 0 4 750 2548 30 0 0 chr4 21744950 21745254 -133884866 - ORR1A1 LTR MaLR 0 346 43 4 750 23 33 0 0 chr4 21745577 21745607 -133884513 + AT_rich Low_complexity Low_complexity 1 30 0 4 750 361 280 63 21 chr4 21745901 21745996 -133884124 + RSINE1 SINE B4 3 101 -64 4 750 375 300 140 0 chr4 21746795 21747045 -133883075 + L1M3 LINE L1 5494 5778 -405 4 750 13794 85 25 6 chr4 21747078 21749849 -133880271 - L1VL4 LINE L1 -550 3009 193 4 750 247 283 54 70 chr4 21750077 21750206 -133879914 + PB1 SINE Alu 1 127 0 4 750 237 169 164 33 chr4 21750692 21750753 -133879367 + RLTR25A LTR ERVK 514 582 -521 4 750 677 83 21 0 chr4 21750701 21750797 -133879323 + B1_Mur3 SINE Alu 52 149 0 4 750 586 170 71 0 chr4 21751094 21751206 -133878914 - PB1D9 SINE Alu 0 120 1 4 750 318 224 0 0 chr4 21752799 21752866 -133877254 + B1F SINE Alu 83 149 0 4 750 749 181 8 0 chr4 21753033 21753160 -133876960 + B1_Mus2 SINE Alu 4 131 -16 4 750 213 256 0 0 chr4 21753874 21753913 -133876207 - BC1_Mm scRNA scRNA -96 56 18 4 750 302 308 36 36 chr4 21753952 21754063 -133876057 - ID_B1 SINE B4 -12 212 102 4 750 219 69 0 0 chr4 21754107 21754136 -133875984 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 750 243 0 0 0 chr4 21754192 21754219 -133875901 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 750 281 225 89 12 chr4 21754293 21754389 -133875731 + PB1D9 SINE Alu 33 131 -19 4 750 499 289 80 87 chr4 21755588 21755876 -133874244 + B4 SINE B4 1 286 -6 4 750 909 139 0 3 chr4 21756157 21756503 -133873617 + (TG)n Simple_repeat Simple_repeat 1 344 0 4 750 469 304 12 42 chr4 21756520 21756566 -133873554 - RSINE1 SINE B4 0 165 125 4 750 954 117 0 0 chr4 21756566 21756745 -133873375 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 750 469 304 12 42 chr4 21756745 21756866 -133873254 - RSINE1 SINE B4 -41 124 3 4 750 180 0 0 0 chr4 21757136 21757156 -133872964 + (T)n Simple_repeat Simple_repeat 1 20 0 4 750 1245 27 0 7 chr4 21757156 21757304 -133872816 - B1_Mus2 SINE Alu 0 147 1 4 751 414 227 74 52 chr4 21758619 21758732 -133871388 - PB1D10 SINE Alu -3 114 5 4 751 226 220 0 0 chr4 21759705 21759755 -133870365 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 751 240 335 63 109 chr4 21759845 21760019 -133870101 - B4A SINE B4 -124 168 3 4 751 504 261 34 62 chr4 21760157 21760305 -133869815 - B3A SINE B2 -16 182 33 4 751 2961 50 0 8 chr4 21760305 21760686 -133869434 + L1Md_F2 LINE L1 6205 6582 0 4 751 504 261 34 62 chr4 21760686 21760713 -133869407 - B3A SINE B2 -166 32 12 4 751 226 244 0 0 chr4 21760738 21760783 -133869337 - B2_Mm2 SINE B2 -150 45 1 4 751 662 254 7 14 chr4 21760813 21760957 -133869163 - B1_Mur1 SINE Alu -2 147 5 4 751 497 276 50 31 chr4 21760993 21761154 -133868966 - RSINE1 SINE B4 0 165 2 5 751 23 0 0 0 chr4 21761648 21761671 -133868449 + AT_rich Low_complexity Low_complexity 1 23 0 5 751 625 180 52 35 chr4 21761673 21761788 -133868332 + PB1D9 SINE Alu 4 120 0 5 751 1131 54 0 63 chr4 21761832 21761990 -133868130 - B1_Mus1 SINE Alu 0 148 1 5 751 359 288 36 36 chr4 21762274 21762411 -133867709 - MER113A DNA MER1_type -172 142 6 5 751 758 181 22 0 chr4 21763670 21763808 -133866312 + B1_Mus1 SINE Alu 2 142 -6 5 751 232 370 78 16 chr4 21765017 21765146 -133864974 - MLT1A0 LTR MaLR 0 365 229 5 751 323 260 170 0 chr4 21765187 21765287 -133864833 - MLT1A0 LTR MaLR -246 119 3 5 751 1429 32 74 0 chr4 21765453 21765642 -133864478 - MTA_Mm LTR MaLR 0 396 194 5 751 5831 61 25 0 chr4 21765642 21766501 -133863619 + MERVL-int LTR ERVL 4584 5608 -153 5 751 313 127 40 53 chr4 21766512 21766587 -133863533 + ORR1A3-int LTR MaLR 567 640 -1323 5 751 302 0 0 0 chr4 21766587 21766625 -133863495 + MERVL-int LTR ERVL 5448 5485 0 5 751 3687 62 24 0 chr4 21766625 21767089 -133863031 + MT2C_Mm LTR ERVL 1 475 0 5 751 425 241 90 21 chr4 21767194 21767338 -133862782 - RMER10B LTR ERVL -46 352 199 5 751 2474 93 9 6 chr4 21767372 21767717 -133862403 + ORR1A1 LTR MaLR 1 346 0 5 751 1172 168 236 12 chr4 21767837 21768163 -133861957 - MTC LTR MaLR -22 399 1 5 751 3686 121 45 42 chr4 21768246 21768842 -133861278 - MT2B LTR ERVL -3 598 1 5 751 767 180 16 28 chr4 21769087 21769265 -133860855 - B3 SINE B2 -8 187 16 5 751 2034 171 55 0 chr4 21769265 21769627 -133860493 + RLTR14 LTR ERV1 1 382 0 5 751 348 370 165 16 chr4 21769920 21770021 -133860099 - MLT1A0-int LTR MaLR -5 1382 1270 5 751 2389 98 3 0 chr4 21770021 21770347 -133859773 + ORR1A2 LTR MaLR 1 327 0 5 751 348 370 165 16 chr4 21770347 21770500 -133859620 - MLT1A0-int LTR MaLR -118 1269 1090 5 751 3171 61 0 10 chr4 21770607 21771007 -133859113 + MTA_Mm LTR MaLR 1 396 0 5 751 459 270 39 8 chr4 21771080 21771207 -133858913 + B3 SINE B2 86 216 0 5 751 687 180 28 28 chr4 21771259 21771402 -133858718 + B1_Mur2 SINE Alu 1 143 -6 5 751 256 342 0 0 chr4 21771535 21771610 -133858510 - PB1 SINE Alu -33 94 20 5 751 1798 147 113 0 chr4 21771610 21771937 -133858183 + ORR1C2 LTR MaLR 1 364 -20 5 751 936 104 146 0 chr4 21772177 21772341 -133857779 - B2_Mm1t SINE B2 -5 188 1 5 751 529 301 173 20 chr4 21772509 21772683 -133857437 - B4 SINE B4 -5 287 86 5 751 212 0 36 0 chr4 21772683 21772711 -133857409 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 751 529 301 173 20 chr4 21772711 21772784 -133857336 - B4 SINE B4 -207 85 2 5 751 2273 180 54 63 chr4 21773733 21774052 -133856068 - RMER5 LTR ERV1 0 534 213 5 751 605 173 372 0 chr4 21774052 21774208 -133855912 + B3 SINE B2 3 216 0 5 751 2273 180 54 63 chr4 21774208 21774427 -133855693 - RMER5 LTR ERV1 -322 212 1 5 751 332 234 202 0 chr4 21776114 21776208 -133853912 - PB1D9 SINE Alu -6 114 2 5 751 595 168 18 0 chr4 21776421 21776534 -133853586 - B3 SINE B2 -96 120 6 5 751 305 293 84 54 chr4 21776587 21776753 -133853367 - L1MC3 LINE L1 -834 6951 6781 5 751 346 258 18 149 chr4 21777025 21777253 -133852867 - B3A SINE B2 0 198 1 5 751 527 286 125 47 chr4 21777325 21777685 -133852435 - MLT1B LTR MaLR -1 389 2 5 751 243 281 29 140 chr4 21777927 21778134 -133851986 - B2_Mm1t SINE B2 -1 192 9 5 751 617 284 6 47 chr4 21777970 21778140 -133851980 - RSINE1 SINE B4 0 165 3 5 751 244 301 14 0 chr4 21778178 21778251 -133851869 - ID4 SINE ID -9 74 1 5 751 834 153 14 27 chr4 21778812 21778960 -133851160 + B1_Mus2 SINE Alu 2 147 0 5 751 330 301 29 0 chr4 21779067 21779170 -133850950 + MER2B DNA MER2_type 227 332 -4 5 751 231 53 132 0 chr4 21779242 21779280 -133850840 - MT2B2 LTR ERVL -340 244 202 5 751 2429 208 52 7 chr4 21780154 21780706 -133849414 - Lx5 LINE L1 -157 6893 6317 5 751 589 286 133 42 chr4 21781853 21782116 -133848004 - B4A SINE B4 -5 287 1 5 751 783 144 40 0 chr4 21782179 21782304 -133847816 + B1_Mur2 SINE Alu 10 139 -10 5 751 205 86 29 0 chr4 21782429 21782464 -133847656 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 751 399 338 37 0 chr4 21782467 21782603 -133847517 - B1_Mur1 SINE Alu -8 141 1 5 751 795 140 36 14 chr4 21783260 21783398 -133846722 - B1_Mur4 SINE Alu -1 149 9 5 751 212 200 0 18 chr4 21783556 21783612 -133846508 + GA-rich Low_complexity Low_complexity 3 57 0 5 751 2888 43 0 3 chr4 21783654 21784001 -133846119 - ORR1A1 LTR MaLR 0 346 1 5 751 1299 80 32 0 chr4 21785031 21785218 -133844902 - B2_Mm2 SINE B2 -1 194 2 5 751 396 156 59 59 chr4 21785634 21785736 -133844384 + MIR SINE MIR 105 206 -56 5 751 374 261 47 53 chr4 21785848 21785998 -133844122 + B1F SINE Alu 1 149 0 5 751 339 274 184 8 chr4 21787501 21787626 -133842494 + B1F SINE Alu 2 148 -1 5 751 384 301 50 80 chr4 21788760 21788959 -133841161 + MIRb SINE MIR 53 245 -23 5 751 628 204 150 70 chr4 21790239 21790439 -133839681 + B3 SINE B2 1 216 0 5 751 249 33 0 0 chr4 21790637 21790667 -133839453 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 751 7401 77 0 2 chr4 21790674 21792321 -133837799 - L1_Mus1 LINE L1 -3 6564 4922 5 751 690 120 104 0 chr4 21792741 21792866 -133837254 - B1_Mus1 SINE Alu 0 148 11 5 751 246 225 139 124 chr4 21792766 21792903 -133837217 - MT2B LTR ERVL -323 278 140 5 751 873 113 8 0 chr4 21793472 21793605 -133836515 - B1_Mur3 SINE Alu 0 149 16 5 751 238 116 0 23 chr4 21793605 21793649 -133836471 - Lx9 LINE L1 -219 7425 7383 5 751 2745 220 62 61 chr4 21793644 21794153 -133835967 + Lx9 LINE L1 6553 7065 -579 5 751 1189 34 0 7 chr4 21794153 21794299 -133835821 + B1_Mus2 SINE Alu 2 146 -1 5 751 2745 220 62 61 chr4 21794299 21794641 -133835479 + Lx9 LINE L1 7066 7405 -239 5 751 889 119 154 12 chr4 21794867 21795029 -133835091 - B2_Mm2 SINE B2 -9 186 2 5 751 1084 208 137 47 chr4 21795101 21795444 -133834676 - ORR1D1 LTR MaLR 0 374 1 5 751 223 196 0 35 chr4 21795884 21795942 -133834178 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 751 882 248 60 57 chr4 21795951 21796233 -133833887 - B4A SINE B4 -7 285 3 5 751 1264 27 0 0 chr4 21796414 21796561 -133833559 - B1_Mus2 SINE Alu 0 147 1 5 751 22 99 0 0 chr4 21796561 21796632 -133833488 + AT_rich Low_complexity Low_complexity 1 71 0 5 751 2406 191 160 30 chr4 21798854 21799512 -133830608 - RLTR40 LTR ERVK -74 743 1 5 751 444 231 103 15 chr4 21800018 21800154 -133829966 - B1_Mur3 SINE Alu 0 149 2 5 751 231 322 106 41 chr4 21800238 21800361 -133829759 + MER33 DNA MER1_type 1 131 -193 5 751 769 72 259 7 chr4 21800438 21800577 -133829543 - B2_Mm2 SINE B2 -19 176 3 5 751 255 214 0 0 chr4 21800936 21800992 -133829128 + (CAG)n Simple_repeat Simple_repeat 3 58 0 5 751 229 297 0 67 chr4 21801385 21801504 -133828616 + GA-rich Low_complexity Low_complexity 5 115 0 5 751 25 0 0 0 chr4 21801933 21801958 -133828162 + AT_rich Low_complexity Low_complexity 1 25 0 5 751 22 56 0 0 chr4 21801997 21802033 -133828087 + AT_rich Low_complexity Low_complexity 1 36 0 5 751 23 0 0 0 chr4 21802853 21802876 -133827244 + AT_rich Low_complexity Low_complexity 1 23 0 5 751 662 242 30 60 chr4 21804044 21804211 -133825909 + B3A SINE B2 5 166 -32 5 751 342 0 0 0 chr4 21804213 21804251 -133825869 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 751 341 169 45 205 chr4 21804743 21804855 -133825265 - B3 SINE B2 -111 105 12 5 751 443 268 252 7 chr4 21805022 21805161 -133824959 - B3A SINE B2 -25 173 1 5 751 398 191 121 52 chr4 21806005 21806121 -133823999 - MTD LTR MaLR -2 417 294 5 751 343 266 62 27 chr4 21806174 21806286 -133823834 - MTD LTR MaLR -291 128 13 5 751 1240 28 7 0 chr4 21807527 21807672 -133822448 + B1_Mus2 SINE Alu 2 147 0 5 751 321 100 0 0 chr4 21807674 21807724 -133822396 + (A)n Simple_repeat Simple_repeat 1 50 0 5 751 23 0 0 0 chr4 21807806 21807829 -133822291 + AT_rich Low_complexity Low_complexity 1 23 0 5 751 222 164 52 52 chr4 21808068 21808126 -133821994 - B1_Mus1 SINE Alu -72 76 19 5 751 825 228 19 39 chr4 21808251 21808456 -133821664 - B3 SINE B2 -14 202 2 5 751 746 223 67 67 chr4 21808743 21808921 -133821199 - B3A SINE B2 -2 196 19 5 751 791 282 51 4 chr4 21810046 21810281 -133819839 + B4A SINE B4 2 247 -45 5 751 764 57 38 0 chr4 21810262 21810368 -133819752 + B1_Mus1 SINE Alu 39 148 0 5 751 554 234 40 157 chr4 21810368 21810456 -133819664 + B4 SINE B4 122 292 0 5 751 207 228 50 12 chr4 21810457 21810537 -133819583 + (CATA)n Simple_repeat Simple_repeat 4 86 0 5 751 331 238 43 87 chr4 21810550 21810688 -133819432 + RMER15 LTR ERVL 1 132 -443 5 751 480 254 156 11 chr4 21810683 21810862 -133819258 + RMER15 LTR ERVL 371 575 0 5 751 1131 314 123 46 chr4 21810864 21811199 -133818921 + RMER15-int LTR ERVL 5 360 -4639 5 751 2506 150 60 27 chr4 21811199 21811650 -133818470 - RMER4A LTR ERVK 0 466 1 5 751 1131 314 123 46 chr4 21811650 21812015 -133818105 + RMER15-int LTR ERVL 361 759 -4240 5 751 785 239 0 0 chr4 21812181 21812323 -133817797 - B1_Mur2 SINE Alu -1 148 7 5 751 686 259 106 5 chr4 21812401 21812618 -133817502 + RMER15-int LTR ERVL 997 1235 -3764 5 751 342 195 130 0 chr4 21812689 21812766 -133817354 + RMER15-int LTR ERVL 1329 1415 -3584 5 751 290 273 30 10 chr4 21812990 21813090 -133817030 + RMER15-int LTR ERVL 1382 1483 -3516 5 751 313 244 23 0 chr4 21813140 21813226 -133816894 + RMER15-int LTR ERVL 1516 1603 -3396 5 751 7134 53 1 45 chr4 21813250 21814248 -133815872 - MuRRS-int LTR ERV1 -1007 3683 2730 5 751 3260 89 44 22 chr4 21814246 21815033 -133815087 - MuRRS-int LTR ERV1 -3653 1037 1 5 751 4027 37 2 16 chr4 21815033 21815522 -133814598 - LTRIS_Mm LTR ERV1 0 482 1 5 751 287 244 97 32 chr4 21815598 21815691 -133814429 + RSINE1 SINE B4 7 105 -60 5 751 369 43 0 0 chr4 21815707 21815754 -133814366 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 751 352 137 41 31 chr4 21815757 21815855 -133814265 + GA-rich Low_complexity Low_complexity 3 101 0 5 751 345 239 117 41 chr4 21816801 21816858 -133813262 - L1MD LINE L1 -566 5613 5550 5 751 1103 77 0 6 chr4 21816858 21817014 -133813106 + (TCTA)n Simple_repeat Simple_repeat 1 155 0 5 751 345 228 101 39 chr4 21817014 21817169 -133812951 - L1MD LINE L1 -809 5550 5383 5 751 698 278 12 31 chr4 21817372 21817532 -133812588 - RSINE1 SINE B4 0 165 9 5 751 711 256 64 0 chr4 21817638 21817841 -133812279 + B3 SINE B2 1 216 0 6 751 267 184 212 10 chr4 21817863 21817962 -133812158 - L1MD LINE L1 -1895 4251 4133 5 751 498 33 0 0 chr4 21818320 21818380 -133811740 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 751 437 0 19 0 chr4 21818471 21818524 -133811596 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 6 751 187 161 18 18 chr4 21818527 21818584 -133811536 + A-rich Low_complexity Low_complexity 2 58 0 6 751 358 244 12 12 chr4 21818769 21818852 -133811268 + B3A SINE B2 1 83 -115 6 751 637 241 99 16 chr4 21818929 21819233 -133810887 - L1MD LINE L1 -3440 2706 2378 5 751 27 87 0 0 chr4 21819446 21819515 -133810605 + AT_rich Low_complexity Low_complexity 1 69 0 6 751 887 235 18 0 chr4 21819550 21819720 -133810400 + B3A SINE B2 4 176 -22 6 751 24 0 0 0 chr4 21819791 21819815 -133810305 + AT_rich Low_complexity Low_complexity 1 24 0 6 751 39 0 0 0 chr4 21820211 21820250 -133809870 + AT_rich Low_complexity Low_complexity 1 39 0 6 751 1835 167 76 6 chr4 21820436 21820779 -133809341 - ORR1C1 LTR MaLR -10 368 2 6 751 1629 27 0 0 chr4 21820941 21821126 -133808994 + B2_Mm1t SINE B2 3 187 -6 6 751 21 0 0 0 chr4 21821441 21821462 -133808658 + AT_rich Low_complexity Low_complexity 1 21 0 6 751 450 0 0 0 chr4 21821484 21821534 -133808586 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 751 723 203 16 0 chr4 21821565 21821688 -133808432 - RSINE1 SINE B4 -36 129 5 6 751 315 380 64 91 chr4 21821963 21822394 -133807726 - L2b LINE L2 -2 3373 2940 6 751 3884 120 79 9 chr4 21822394 21823041 -133807079 + Lx LINE L1 5959 6650 -4 6 751 315 334 42 78 chr4 21823041 21823344 -133806776 - L2b LINE L2 -480 2939 2644 6 751 231 271 21 0 chr4 21823428 21823476 -133806644 + MIRb SINE MIR 214 262 -6 6 751 659 184 110 0 chr4 21824011 21824147 -133805973 + B3A SINE B2 3 153 -45 6 751 36 0 0 0 chr4 21824172 21824208 -133805912 + AT_rich Low_complexity Low_complexity 1 36 0 6 751 715 193 251 0 chr4 21824662 21824833 -133805287 - B3 SINE B2 -1 215 2 6 751 1209 54 0 0 chr4 21824864 21825011 -133805109 + B1_Mus2 SINE Alu 1 147 0 6 751 217 132 0 0 chr4 21825011 21825049 -133805071 + (A)n Simple_repeat Simple_repeat 1 38 0 6 751 239 51 0 71 chr4 21825652 21825680 -133804440 + (T)n Simple_repeat Simple_repeat 1 28 0 6 751 1196 61 0 0 chr4 21825680 21825827 -133804293 - B1_Mus2 SINE Alu 0 147 1 6 751 239 51 0 71 chr4 21825827 21825840 -133804280 + (T)n Simple_repeat Simple_repeat 1 11 0 6 751 326 325 66 16 chr4 21825982 21826104 -133804016 + B1F1 SINE Alu 1 128 -21 6 751 32 0 0 0 chr4 21827073 21827105 -133803015 + AT_rich Low_complexity Low_complexity 1 32 0 6 751 404 226 142 62 chr4 21827114 21827340 -133802780 - Lx9 LINE L1 -18 7626 7383 6 751 672 283 5 27 chr4 21827901 21828086 -133802034 - B3A SINE B2 -14 184 4 6 751 996 185 53 5 chr4 21828122 21828328 -133801792 - B3 SINE B2 0 216 1 6 751 5411 217 159 23 chr4 21828365 21828528 -133801592 - Lx6 LINE L1 -1 7459 7284 6 751 643 22 33 22 chr4 21828528 21828620 -133801500 + (ATATG)n Simple_repeat Simple_repeat 3 95 0 6 751 5411 205 136 22 chr4 21828620 21830191 -133799929 - Lx6 LINE L1 -177 7283 5487 6 751 598 168 0 0 chr4 21830205 21830324 -133799796 + L1_Mur3 LINE L1 2801 2919 -2961 6 751 3981 169 41 109 chr4 21830324 21831566 -133798554 - Lx6 LINE L1 -2800 3080 1924 6 751 4256 156 75 19 chr4 21831551 21832589 -133797531 - Lx6 LINE L1 -4478 1402 300 6 751 252 200 153 31 chr4 21832596 21832694 -133797426 - L1MD3 LINE L1 -9 7986 7877 6 751 368 336 84 0 chr4 21832695 21832838 -133797282 - MER96 DNA hAT -2 173 19 6 751 353 269 9 0 chr4 21832914 21833022 -133797098 - L1MD3 LINE L1 -197 7798 7690 6 751 531 268 39 0 chr4 21833070 21833223 -133796897 - RSINE1 SINE B4 -4 161 3 6 751 25 0 0 0 chr4 21833307 21833332 -133796788 + AT_rich Low_complexity Low_complexity 1 25 0 6 751 489 17 0 0 chr4 21833627 21833685 -133796435 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6 751 2233 182 74 96 chr4 21834038 21834233 -133795887 + Lx7 LINE L1 7079 7250 -446 6 751 612 0 0 0 chr4 21834233 21834301 -133795819 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 6 751 1280 48 12 0 chr4 21834301 21834468 -133795652 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 6 751 2233 182 74 96 chr4 21834468 21834877 -133795243 + Lx7 LINE L1 7251 7670 -26 6 751 943 70 0 0 chr4 21834877 21835005 -133795115 + B1_Mus2 SINE Alu 20 147 0 6 751 735 166 79 7 chr4 21835019 21835159 -133794961 + B1_Mur4 SINE Alu 1 150 0 6 751 378 162 0 0 chr4 21835288 21835362 -133794758 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 751 1503 72 0 5 chr4 21835915 21836110 -133794010 - B2_Mm2 SINE B2 0 195 2 6 751 180 203 129 48 chr4 21836280 21836342 -133793778 - MIRb SINE MIR -155 113 47 6 751 376 272 106 10 chr4 21836712 21836816 -133793304 + PB1D10 SINE Alu 2 115 -5 6 751 467 130 268 0 chr4 21836824 21836947 -133793173 + Lx5 LINE L1 6895 7050 0 6 751 1454 69 16 0 chr4 21836967 21837156 -133792964 + B2_Mm1t SINE B2 2 193 0 6 751 192 179 0 0 chr4 21838257 21838296 -133791824 + CT-rich Low_complexity Low_complexity 4 42 0 6 751 794 152 186 19 chr4 21838317 21838478 -133791642 - B2_Mm2 SINE B2 -4 191 4 6 751 442 287 95 6 chr4 21838478 21838636 -133791484 - Lx8 LINE L1 -151 7322 7138 6 751 765 232 85 15 chr4 21838799 21839000 -133791120 + B3 SINE B2 1 215 -1 6 751 1640 191 48 6 chr4 21839003 21839356 -133790764 + ORR1D1 LTR MaLR 2 369 -5 6 751 227 279 83 31 chr4 21839732 21839828 -133790292 + PB1D9 SINE Alu 1 101 -19 6 751 24 32 0 0 chr4 21839828 21839859 -133790261 + AT_rich Low_complexity Low_complexity 1 31 0 6 751 752 170 223 23 chr4 21839859 21840034 -133790086 - B3 SINE B2 -3 213 4 6 751 560 285 0 0 chr4 21840189 21840319 -133789801 + RSINE1 SINE B4 32 161 -4 6 751 1225 48 0 0 chr4 21840393 21840540 -133789580 + B1_Mus2 SINE Alu 1 147 0 6 751 350 230 0 51 chr4 21840546 21840559 -133789561 + ID_B1 SINE B4 143 155 -69 6 751 1835 164 65 43 chr4 21840559 21840929 -133789191 - ORR1C1 LTR MaLR 0 378 1 6 751 350 230 0 51 chr4 21840929 21840993 -133789127 + ID_B1 SINE B4 156 216 -8 6 751 1295 162 32 32 chr4 21841120 21841369 -133788751 + Lx4B LINE L1 6701 6949 -109 6 751 761 259 93 52 chr4 21841473 21841816 -133788304 + RMER13A LTR ERVK 106 462 -398 6 751 274 115 5 0 chr4 21842066 21842123 -133787997 + Lx4B LINE L1 6951 7009 -49 6 751 234 0 0 0 chr4 21842138 21842164 -133787956 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 751 348 24 0 0 chr4 21842171 21842212 -133787908 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 751 1009 68 0 0 chr4 21842216 21842349 -133787771 - B1_Mus1 SINE Alu 0 148 16 6 751 1243 104 129 0 chr4 21842504 21842697 -133787423 - L1_Mus1 LINE L1 0 6567 6350 6 751 831 70 9 0 chr4 21842699 21842813 -133787307 + L1_Mus1 LINE L1 6226 6340 -227 6 751 5461 158 28 51 chr4 21842917 21843703 -133786417 - L1_Mur2 LINE L1 -845 5032 4283 6 751 1062 65 0 0 chr4 21843703 21843842 -133786278 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 6 751 5461 158 28 51 chr4 21843842 21844139 -133785981 - L1_Mur2 LINE L1 -1595 4282 3975 6 751 1260 204 108 61 chr4 21844139 21844567 -133785553 + RLTR20B3 LTR ERVK 21 468 -109 6 751 2857 160 39 52 chr4 21844608 21845203 -133784917 - L1_Mur2 LINE L1 -1883 3997 3411 6 751 4721 206 69 14 chr4 21845205 21845508 -133784612 - Lx6 LINE L1 -1270 6190 5856 6 751 842 81 16 0 chr4 21845508 21845631 -133784489 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 6 751 4721 175 49 7 chr4 21845631 21846523 -133783597 - Lx6 LINE L1 -22 5855 4925 6 751 195 42 0 0 chr4 21846573 21846597 -133783523 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 751 295 78 39 0 chr4 21846597 21846648 -133783472 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 751 3376 266 62 72 chr4 21846704 21847708 -133782412 - RMER1C Other Other -1 1341 326 6 751 225 0 0 0 chr4 21847708 21847733 -133782387 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 751 3376 266 62 72 chr4 21847733 21848054 -133782066 - RMER1C Other Other -1017 325 31 6 751 431 210 77 82 chr4 21848543 21848697 -133781423 - ID_B1 SINE B4 -71 153 2 6 751 510 266 116 42 chr4 21848885 21849101 -133781019 + B4A SINE B4 9 240 -52 6 751 189 0 0 0 chr4 21849103 21849124 -133780996 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 751 1122 275 55 38 chr4 21850045 21850464 -133779656 + BGLII_B LTR ERVK 6 431 -10 6 751 399 295 164 50 chr4 21850605 21851008 -133779112 + MER31B LTR ERV1 6 454 -12 6 751 542 242 16 8 chr4 21851010 21851131 -133778989 + B1F SINE Alu 7 128 -21 6 751 891 170 14 0 chr4 21851427 21851568 -133778552 - B1_Mur2 SINE Alu -6 143 1 6 751 36 0 0 0 chr4 21851568 21851604 -133778516 + AT_rich Low_complexity Low_complexity 1 36 0 6 751 618 156 29 59 chr4 21851696 21851832 -133778288 - RMER1B Other Other 0 1066 935 6 751 1882 83 76 0 chr4 21851849 21852139 -133777981 - ORR1A4 LTR MaLR -8 321 10 6 751 2274 159 74 17 chr4 21852161 21852632 -133777488 - RMER1B Other Other -147 919 363 6 751 243 0 0 0 chr4 21852670 21852697 -133777423 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 751 929 259 34 0 chr4 21852700 21852939 -133777181 - Lx9 LINE L1 -195 7449 7203 6 751 326 243 117 0 chr4 21853089 21853192 -133776928 + B1_Mus2 SINE Alu 1 115 -32 6 751 279 0 0 0 chr4 21853192 21853223 -133776897 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 751 441 0 0 0 chr4 21853223 21853271 -133776849 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 751 4522 125 68 4 chr4 21853656 21854349 -133775771 + RMER19A LTR ERVK 1 737 0 6 751 307 294 55 0 chr4 21854908 21855017 -133775103 + PB1D10 SINE Alu 2 116 -1 6 751 307 325 0 0 chr4 21855022 21855102 -133775018 + ID4_ SINE ID 4 83 0 6 751 346 100 0 0 chr4 21855152 21855202 -133774918 - MTC LTR MaLR 0 421 372 6 751 3141 58 10 36 chr4 21855212 21855623 -133774497 + MTB LTR MaLR 1 400 0 6 751 4027 63 25 45 chr4 21855623 21856174 -133773946 + L1_Mus4 LINE L1 6095 6636 0 6 751 271 209 28 56 chr4 21856174 21856194 -133773926 - MTC LTR MaLR -47 372 351 6 751 1186 119 0 22 chr4 21856194 21856374 -133773746 + B2_Mm2 SINE B2 2 177 -18 6 751 245 0 86 0 chr4 21856995 21857030 -133773090 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 751 1208 61 0 0 chr4 21857032 21857180 -133772940 + B1_Mus1 SINE Alu 1 148 0 6 751 514 197 116 0 chr4 21857215 21857336 -133772784 + Lx5 LINE L1 6772 6927 -131 7 751 230 292 0 0 chr4 21857841 21857889 -133772231 + ID4_ SINE ID 22 69 -14 7 751 25 51 0 0 chr4 21858512 21858551 -133771569 + GC_rich Low_complexity Low_complexity 1 39 0 7 751 396 0 0 0 chr4 21861831 21861875 -133768245 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 751 23 0 0 0 chr4 21861892 21861915 -133768205 + AT_rich Low_complexity Low_complexity 1 23 0 7 751 342 138 0 0 chr4 21861954 21862012 -133768108 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 751 353 219 24 12 chr4 21862105 21862188 -133767932 - PB1D10 SINE Alu -6 111 28 7 751 368 230 36 8 chr4 21863257 21863354 -133766766 - PB1D10 SINE Alu -37 113 18 7 751 184 333 35 26 chr4 21863374 21863488 -133766632 + MIRb SINE MIR 130 244 -24 7 751 833 235 35 10 chr4 21864400 21864602 -133765518 + B3 SINE B2 4 210 -6 7 751 483 145 0 0 chr4 21864654 21864737 -133765383 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 751 563 173 43 152 chr4 21865199 21865363 -133764757 - B1_Mur4 SINE Alu 0 150 5 7 751 3226 51 0 0 chr4 21865386 21865800 -133764320 + L1Md_F2 LINE L1 6175 6582 0 7 751 730 213 14 14 chr4 21866088 21866231 -133763889 - B1_Mur1 SINE Alu -6 143 1 7 751 346 186 30 104 chr4 21866428 21866565 -133763555 - B1_Mur1 SINE Alu -6 143 31 7 751 600 137 0 0 chr4 21866653 21866755 -133763365 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 7 751 686 269 0 0 chr4 21866820 21866965 -133763155 - RSINE1 SINE B4 -19 146 2 7 751 390 21 0 0 chr4 21867075 21867122 -133762998 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 751 1161 28 0 0 chr4 21867125 21867270 -133762850 - B2_Mm1a SINE B2 -47 146 2 7 751 1409 67 17 0 chr4 21867319 21867499 -133762621 + B2_Mm2 SINE B2 5 187 -8 7 751 490 282 68 8 chr4 21867503 21867753 -133762367 - Charlie1a DNA MER1_type -156 1299 1035 7 751 740 302 104 12 chr4 21867997 21868375 -133761745 - L1MA4A LINE L1 -376 5927 5545 7 751 407 274 125 49 chr4 21868723 21868907 -133761213 - B3A SINE B2 0 198 1 7 751 207 0 0 0 chr4 21869040 21869063 -133761057 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 751 786 153 35 28 chr4 21869065 21869206 -133760914 - B1_Mur4 SINE Alu -6 144 3 7 751 322 275 0 84 chr4 21869206 21869235 -133760885 - MT2B LTR ERVL -446 155 138 7 751 231 281 0 0 chr4 21869682 21869746 -133760374 - L1ME2z LINE L1 -187 6257 6194 7 751 775 219 14 7 chr4 21870210 21870357 -133759763 - B1_Mur2 SINE Alu 0 149 2 7 751 228 265 44 0 chr4 21870435 21870503 -133759617 - ID4 SINE ID -9 74 4 7 751 735 278 45 41 chr4 21870554 21870820 -133759300 - B4A SINE B4 0 292 26 7 751 336 275 17 60 chr4 21870830 21870946 -133759174 - PB1D10 SINE Alu -6 111 1 7 751 444 264 150 11 chr4 21871417 21871597 -133758523 - Lx8 LINE L1 -221 7252 7048 7 751 725 225 110 31 chr4 21871671 21871988 -133758132 - RLTR15 LTR ERVK -16 343 2 7 751 328 265 162 0 chr4 21872214 21872350 -133757770 + Cheshire DNA MER1_type 59 216 -2204 7 751 566 287 8 0 chr4 21872643 21872765 -133757355 + ID_B1 SINE B4 82 204 -20 7 751 275 146 0 18 chr4 21872907 21872963 -133757157 + GA-rich Low_complexity Low_complexity 1 55 0 7 751 430 214 57 19 chr4 21872990 21873095 -133757025 - B1_Mur1 SINE Alu -39 110 2 7 751 959 171 72 124 chr4 21873216 21873618 -133756502 - ORR1C2 LTR MaLR 0 384 42 7 751 461 363 21 0 chr4 21873617 21873810 -133756310 - B4 SINE B4 -93 199 3 7 751 242 231 0 0 chr4 21873825 21873890 -133756230 - B3A SINE B2 -131 67 3 7 751 314 241 13 0 chr4 21873892 21873971 -133756149 - L1M5 LINE L1 -481 5698 5619 7 751 775 206 57 16 chr4 21873983 21874175 -133755945 + B3 SINE B2 15 214 -2 7 751 324 169 84 0 chr4 21874201 21874272 -133755848 - L1M5 LINE L1 -564 5615 5539 7 751 1209 81 0 2 chr4 21875243 21875825 -133754295 + (TC)n Simple_repeat Simple_repeat 1 581 0 7 751 240 0 0 70 chr4 21876174 21876217 -133753903 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 751 751 187 8 0 chr4 21876552 21876686 -133753434 + B1_Mus1 SINE Alu 2 136 -12 7 751 423 0 0 0 chr4 21877702 21877749 -133752371 + (CATA)n Simple_repeat Simple_repeat 2 48 0 7 751 227 300 0 24 chr4 21878902 21878984 -133751136 - ID4_ SINE ID -1 82 3 7 751 409 312 9 0 chr4 21879278 21879387 -133750733 - PB1D9 SINE Alu -7 113 4 7 751 270 242 45 0 chr4 21879606 21879672 -133750448 - PB1D10 SINE Alu -47 70 2 7 751 213 250 0 0 chr4 21879639 21879691 -133750429 - B4A SINE B4 -173 119 68 7 751 933 285 120 6 chr4 21880421 21880746 -133749374 - MLT1A0 LTR MaLR 0 365 4 7 751 3035 35 0 0 chr4 21881482 21881828 -133748292 - ORR1A1 LTR MaLR 0 346 1 7 751 1426 75 11 0 chr4 21881950 21882137 -133747983 + B2_Mm1t SINE B2 2 190 -3 7 751 271 191 29 73 chr4 21882160 21882228 -133747892 + B4 SINE B4 1 65 -227 7 751 575 281 13 25 chr4 21882257 21882442 -133747678 + B3A SINE B2 1 183 -33 7 751 590 263 53 53 chr4 21882472 21882681 -133747439 + B4 SINE B4 81 289 -3 7 751 180 179 0 0 chr4 21882722 21882761 -133747359 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 751 26 0 0 0 chr4 21884689 21884715 -133745405 + AT_rich Low_complexity Low_complexity 1 26 0 7 751 395 311 149 19 chr4 21887257 21887526 -133742594 + Tigger7 DNA MER2_type 5 308 -2183 7 751 212 295 66 0 chr4 21888737 21888798 -133741322 + ID2 SINE ID 5 69 -14 7 752 396 0 0 0 chr4 21889523 21889567 -133740553 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 752 553 273 0 0 chr4 21889977 21890109 -133740011 - ID_B1 SINE B4 -4 220 89 7 752 200 184 0 0 chr4 21890543 21890581 -133739539 + G-rich Low_complexity Low_complexity 1 38 0 7 752 423 308 30 30 chr4 21890808 21890942 -133739178 + RSINE1 SINE B4 29 162 -3 7 752 615 67 0 0 chr4 21890946 21891035 -133739085 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 752 387 0 0 0 chr4 21891035 21891077 -133739043 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 752 990 157 0 0 chr4 21891165 21891343 -133738777 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 752 752 229 130 11 chr4 21893381 21893558 -133736562 - B3A SINE B2 0 198 1 7 752 258 105 0 0 chr4 21894073 21894111 -133736009 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 752 1567 250 139 19 chr4 21894507 21895024 -133735096 - Lx8 LINE L1 -138 7335 6757 7 752 356 341 0 39 chr4 21895057 21895185 -133734935 - RSINE1 SINE B4 -41 124 2 7 752 548 235 7 7 chr4 21896035 21896172 -133733948 - B1F1 SINE Alu 0 149 13 7 752 1382 74 6 0 chr4 21896200 21896376 -133733744 - B2_Mm1t SINE B2 -14 179 3 7 752 755 62 294 52 chr4 21896376 21896529 -133733591 - B2_Mm2 SINE B2 -2 193 4 7 752 183 42 0 0 chr4 21896833 21896857 -133733263 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 752 545 240 23 0 chr4 21896906 21897035 -133733085 + B1_Mur1 SINE Alu 2 133 -16 7 752 189 74 0 0 chr4 21897037 21897064 -133733056 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 7 752 963 194 288 0 chr4 21897129 21897417 -133732703 - ORR1D1 LTR MaLR -3 371 1 7 752 207 0 0 0 chr4 21897544 21897567 -133732553 + (T)n Simple_repeat Simple_repeat 1 23 0 7 752 215 214 36 0 chr4 21897600 21897656 -133732464 + L2a LINE L2 3334 3391 -35 7 752 326 217 93 13 chr4 21899133 21899230 -133730890 - PB1D10 SINE Alu -5 112 13 7 752 1961 155 9 112 chr4 21899275 21899696 -133730424 - ORR1C1 LTR MaLR 0 378 1 7 752 1539 127 9 71 chr4 21899926 21900264 -133729856 + RMER10B LTR ERVL 1 317 -81 7 752 235 333 26 0 chr4 21900462 21900540 -133729580 + MLT1F2 LTR MaLR 403 482 -78 7 752 492 275 12 80 chr4 21900539 21900679 -133729441 + RSINE1 SINE B4 15 145 -20 7 752 297 0 0 0 chr4 21900679 21900712 -133729408 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 752 492 275 12 80 chr4 21900712 21900733 -133729387 + RSINE1 SINE B4 146 165 0 7 752 666 170 0 0 chr4 21900733 21900969 -133729151 + (CA)n Simple_repeat Simple_repeat 1 236 0 7 752 670 215 20 14 chr4 21900991 21901137 -133728983 + B1_Mur2 SINE Alu 1 147 -2 7 752 847 304 28 21 chr4 21901770 21902056 -133728064 + B4 SINE B4 5 292 0 7 752 636 107 0 0 chr4 21902696 21902799 -133727321 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 752 529 267 0 62 chr4 21902810 21902954 -133727166 - RSINE1 SINE B4 -29 136 2 7 752 201 108 0 0 chr4 21904791 21904828 -133725292 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 7 752 1373 77 11 6 chr4 21905026 21905209 -133724911 - B2_Mm2 SINE B2 -10 185 2 7 752 459 293 81 77 chr4 21905310 21905558 -133724562 - B4 SINE B4 -43 249 1 7 752 500 149 11 0 chr4 21905618 21905712 -133724408 + CT-rich Low_complexity Low_complexity 3 97 0 7 752 361 355 42 6 chr4 21905986 21906153 -133723967 + B4A SINE B4 2 174 -118 7 752 483 48 0 0 chr4 21906216 21906278 -133723842 + (GGGAGA)n Simple_repeat Simple_repeat 3 64 0 7 752 265 159 32 0 chr4 21906582 21906645 -133723475 + C-rich Low_complexity Low_complexity 1 65 0 7 752 674 327 70 16 chr4 21907767 21908025 -133722095 - B4 SINE B4 -20 272 1 7 752 1594 239 117 48 chr4 21908262 21908824 -133721296 - Lx9 LINE L1 -56 7588 6988 7 752 404 284 60 0 chr4 21910098 21910214 -133719906 + RSINE1 SINE B4 4 126 -39 7 752 360 0 0 0 chr4 21910321 21910361 -133719759 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 8 752 7984 53 12 4 chr4 21910361 21912031 -133718089 - L1Md_F2 LINE L1 0 6582 4900 8 752 1448 79 16 0 chr4 21912264 21912453 -133717667 - B2_Mm2 SINE B2 -2 193 2 8 752 241 208 13 13 chr4 21912482 21912560 -133717560 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 752 337 291 16 41 chr4 21912634 21912756 -133717364 - B4A SINE B4 -173 119 1 8 752 21 0 0 0 chr4 21913068 21913089 -133717031 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 564 273 47 0 chr4 21913132 21913260 -133716860 - RSINE1 SINE B4 -28 137 4 8 752 285 98 0 0 chr4 21913388 21913429 -133716691 + (T)n Simple_repeat Simple_repeat 1 41 0 8 752 1215 48 0 0 chr4 21913429 21913575 -133716545 - B1_Mm SINE Alu 0 147 2 8 752 189 74 0 0 chr4 21914518 21914545 -133715575 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 752 200 333 14 0 chr4 21915219 21915288 -133714832 + CT-rich Low_complexity Low_complexity 3 72 0 8 752 3977 77 0 0 chr4 21915369 21915879 -133714241 - L1Md_T LINE L1 0 6582 6073 8 752 2561 90 11 0 chr4 21915962 21916317 -133713803 - L1_Mus3 LINE L1 -6 6632 6274 8 752 337 242 35 99 chr4 21916317 21916353 -133713767 - B1F1 SINE Alu -7 142 109 8 752 3876 37 30 0 chr4 21916353 21916814 -133713306 - MT2C_Mm LTR ERVL 0 475 1 8 752 337 242 35 99 chr4 21916814 21916844 -133713276 - B1F1 SINE Alu -41 108 85 8 752 1840 163 39 107 chr4 21916844 21917256 -133712864 - ORR1C2 LTR MaLR 0 384 1 8 752 337 242 35 99 chr4 21917256 21917330 -133712790 - B1F1 SINE Alu -65 84 10 8 752 21 0 0 0 chr4 21918305 21918326 -133711794 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 24 0 0 0 chr4 21918415 21918439 -133711681 + AT_rich Low_complexity Low_complexity 1 24 0 8 752 4569 196 62 2 chr4 21918444 21919335 -133710785 - Lx6 LINE L1 -2 7458 6515 8 752 284 361 14 27 chr4 21919658 21919806 -133710314 - MLT1B LTR MaLR -40 350 205 8 752 2428 170 39 16 chr4 21919896 21920327 -133709793 - Lx5 LINE L1 -9 7041 6601 8 752 452 261 0 23 chr4 21921277 21921436 -133708684 + MIRc SINE MIR 35 193 -75 8 752 192 370 0 0 chr4 21924033 21924106 -133706014 - L2b LINE L2 0 3375 3303 8 752 343 286 60 75 chr4 21924992 21925192 -133704928 - B3A SINE B2 0 198 2 8 752 22 0 0 0 chr4 21926783 21926805 -133703315 + AT_rich Low_complexity Low_complexity 1 22 0 8 752 419 223 0 16 chr4 21929329 21929452 -133700668 + CT-rich Low_complexity Low_complexity 1 121 0 8 752 743 184 52 0 chr4 21929459 21929595 -133700525 - B1_Mus1 SINE Alu 0 148 6 8 752 472 222 24 49 chr4 21929494 21929617 -133700503 - MT2B LTR ERVL -337 264 145 8 752 21 0 0 0 chr4 21929623 21929644 -133700476 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 247 271 0 0 chr4 21929644 21929692 -133700428 - B1_Mur3 SINE Alu -99 50 3 8 752 1413 41 3 0 chr4 21930997 21931289 -133698831 + (TG)n Simple_repeat Simple_repeat 1 292 0 8 752 369 228 69 54 chr4 21931732 21931862 -133698258 + MLT2B2 LTR ERVL 4 135 -421 8 752 258 241 61 18 chr4 21933102 21933216 -133696904 + RMER17A LTR ERVK 356 474 -277 8 752 279 0 0 0 chr4 21935409 21935440 -133694680 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 8 752 268 276 0 164 chr4 21936598 21936674 -133693446 + RSINE1 SINE B4 79 142 -23 8 752 459 0 0 0 chr4 21936674 21936725 -133693395 + (CATAC)n Simple_repeat Simple_repeat 5 55 0 8 752 268 276 0 164 chr4 21936725 21936752 -133693368 + RSINE1 SINE B4 143 165 0 8 752 21 0 0 0 chr4 21937513 21937534 -133692586 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 633 49 0 0 chr4 21938344 21938425 -133691695 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 752 363 260 39 0 chr4 21938430 21938534 -133691586 + PB1D10 SINE Alu 10 117 0 8 752 236 196 20 0 chr4 21938547 21938598 -133691522 + ID4_ SINE ID 3 54 -29 8 752 468 0 0 0 chr4 21939192 21939244 -133690876 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 752 3993 128 43 13 chr4 21940014 21940708 -133689412 + RMER6D LTR ERVK 1 715 -5 8 752 201 158 0 0 chr4 21940748 21940786 -133689334 + (CTA)n Simple_repeat Simple_repeat 1 38 0 8 752 219 211 10 21 chr4 21940992 21941089 -133689031 + (TA)n Simple_repeat Simple_repeat 1 96 0 8 752 1515 209 41 22 chr4 21941104 21941470 -133688650 - Lx9 LINE L1 -2 7642 7270 8 752 684 221 158 38 chr4 21941473 21941713 -133688407 + MTD LTR MaLR 112 380 -39 8 752 436 237 75 17 chr4 21942046 21942166 -133687954 - B1F2 SINE Alu -9 140 14 8 752 260 292 31 55 chr4 21943626 21943753 -133686367 - MLT1A LTR MaLR -228 146 23 8 752 529 287 27 0 chr4 21943838 21943988 -133686132 + Tigger5 DNA MER2_type 1 154 -2252 8 752 237 291 244 0 chr4 21943986 21944113 -133686007 + MER3 DNA MER1_type 49 206 -3 8 752 266 355 90 16 chr4 21945978 21946167 -133683953 - MIRb SINE MIR -32 236 34 8 752 244 295 108 66 chr4 21946226 21946310 -133683810 + MER5B DNA MER1_type 1 93 -85 8 752 357 24 0 0 chr4 21946310 21946352 -133683768 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 752 244 295 108 66 chr4 21946352 21946434 -133683686 + MER5B DNA MER1_type 94 173 -5 8 752 26 30 0 0 chr4 21947045 21947078 -133683042 + AT_rich Low_complexity Low_complexity 1 33 0 8 752 688 264 99 55 chr4 21947182 21947455 -133682665 - B4A SINE B4 -2 290 6 8 752 196 262 0 62 chr4 21948250 21948315 -133681805 - MER5A DNA MER1_type -108 81 21 8 752 270 274 67 19 chr4 21948767 21948871 -133681249 - RMER10A LTR ERVL -18 424 316 8 752 323 282 0 0 chr4 21949564 21949635 -133680485 - ID4_ SINE ID -10 73 3 8 752 300 265 112 0 chr4 21949644 21949742 -133680378 - PB1D10 SINE Alu -8 109 1 8 752 480 35 0 0 chr4 21950434 21950492 -133679628 + (TATG)n Simple_repeat Simple_repeat 2 59 0 8 752 713 250 31 5 chr4 21950494 21950687 -133679433 - B3 SINE B2 -15 201 4 8 752 648 277 26 47 chr4 21950714 21950907 -133679213 - B3A SINE B2 -1 215 27 8 752 284 263 48 57 chr4 21950930 21951035 -133679085 - B3 SINE B2 -33 183 80 8 752 544 299 166 42 chr4 21952499 21952764 -133677356 + RMER15 LTR ERVL 276 573 -2 8 752 26 30 0 0 chr4 21952925 21952958 -133677162 + AT_rich Low_complexity Low_complexity 1 33 0 8 752 1249 88 112 0 chr4 21952958 21953163 -133676957 - Lx2A1 LINE L1 -5 7003 6776 8 752 302 335 0 0 chr4 21953321 21953641 -133676479 + (TCCA)n Simple_repeat Simple_repeat 1 320 0 8 752 237 320 0 0 chr4 21953679 21953857 -133676263 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 8 752 255 309 0 0 chr4 21953895 21954073 -133676047 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 8 752 279 309 0 0 chr4 21954111 21954289 -133675831 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 8 752 309 291 0 0 chr4 21954322 21954487 -133675633 + (TCCA)n Simple_repeat Simple_repeat 3 167 0 8 752 336 103 0 0 chr4 21955969 21956027 -133674093 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 752 2234 48 0 7 chr4 21956196 21956469 -133673651 + L1Md_F2 LINE L1 6300 6570 -12 8 752 389 228 62 47 chr4 21956600 21956729 -133673391 + MER5B DNA MER1_type 2 132 -46 8 752 342 65 333 28 chr4 21956721 21956829 -133673291 - B2_Mm2 SINE B2 -8 187 47 8 752 1182 90 78 0 chr4 21956876 21957042 -133673078 - B2_Mm1t SINE B2 -14 179 1 8 752 365 261 66 16 chr4 21957136 21957257 -133672863 + MER5A1 DNA MER1_type 18 144 -22 8 752 2580 58 0 0 chr4 21958995 21959322 -133670798 - L1Md_F2 LINE L1 0 6582 6256 8 752 224 77 26 0 chr4 21959831 21959870 -133670250 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 8 752 577 267 102 0 chr4 21960296 21960472 -133669648 - B4A SINE B4 -94 198 5 8 752 323 332 47 36 chr4 21960950 21961225 -133668895 - L1ME1 LINE L1 -11 6168 5891 8 752 39 38 0 0 chr4 21961243 21961296 -133668824 + AT_rich Low_complexity Low_complexity 1 53 0 8 752 874 221 64 35 chr4 21961604 21961806 -133668314 + B3 SINE B2 4 211 -5 8 752 776 235 17 112 chr4 21961928 21962168 -133667952 + ID_B1 SINE B4 2 218 -6 8 752 594 283 245 0 chr4 21962185 21962418 -133667702 + B4A SINE B4 1 290 -2 8 752 250 304 48 19 chr4 21963778 21963882 -133666238 - MIR SINE MIR -43 219 113 8 752 8474 26 5 0 chr4 21964045 21965278 -133664842 - L1Md_A LINE L1 0 6582 5341 8 752 219 69 0 0 chr4 21965461 21965490 -133664630 + (CAG)n Simple_repeat Simple_repeat 1 29 0 8 752 482 121 0 0 chr4 21966773 21966839 -133663281 - Lx9 LINE L1 -417 7227 7162 8 752 627 238 187 6 chr4 21966840 21967022 -133663098 - B4 SINE B4 -72 220 6 8 752 266 305 124 0 chr4 21967024 21967129 -133662991 + MER58B DNA MER1_type 207 324 -17 8 752 1736 163 62 80 chr4 21967300 21967674 -133662446 - ORR1B2 LTR MaLR 0 367 1 8 752 255 239 15 0 chr4 21967897 21967964 -133662156 + L1M5 LINE L1 5364 5431 -693 8 752 1536 99 9 4 chr4 21967981 21968213 -133661907 + Lx2A LINE L1 6775 7007 -1 8 752 36 0 0 0 chr4 21968310 21968346 -133661774 + AT_rich Low_complexity Low_complexity 1 36 0 8 752 686 244 55 47 chr4 21968371 21968625 -133661495 + ORR1D1 LTR MaLR 2 257 -117 8 752 215 255 20 0 chr4 21968803 21968854 -133661266 + (CATA)n Simple_repeat Simple_repeat 4 55 0 8 752 189 0 0 0 chr4 21968880 21968901 -133661219 + (T)n Simple_repeat Simple_repeat 1 21 0 8 752 294 29 0 0 chr4 21970547 21970582 -133659538 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 752 1665 223 77 28 chr4 21971079 21971572 -133658548 + RLTR17 LTR ERVK 105 621 -71 8 752 288 0 0 0 chr4 21972376 21972408 -133657712 + (TAA)n Simple_repeat Simple_repeat 3 34 0 8 752 2700 121 78 2 chr4 21972419 21972842 -133657278 - Lx4A LINE L1 -3 7055 6601 8 752 2604 219 126 40 chr4 21972857 21973677 -133656443 - RMER19B LTR ERVK -12 890 1 8 752 2113 115 73 0 chr4 21973677 21973990 -133656130 - Lx4A LINE L1 -454 6604 6269 8 752 247 330 119 41 chr4 21974259 21974502 -133655618 + LTR16E1 LTR ERVL 208 469 -69 8 752 1358 141 11 311 chr4 21974511 21974723 -133655397 - ORR1C1 LTR MaLR 0 378 179 9 752 402 21 0 0 chr4 21974723 21974770 -133655350 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 752 1358 141 11 311 chr4 21974770 21975094 -133655026 - ORR1C1 LTR MaLR -200 178 3 9 752 188 321 25 13 chr4 21975269 21975348 -133654772 + MIRm SINE MIR 197 276 0 9 752 1227 277 61 6 chr4 21977839 21978198 -133651922 - MTE2b LTR MaLR 0 379 1 9 752 887 296 84 24 chr4 21978242 21978622 -133651498 + MLT1D LTR MaLR 1 403 -102 9 752 1286 295 44 25 chr4 21980037 21980468 -133649652 + Lx8 LINE L1 6704 7142 -331 9 752 7871 59 2 0 chr4 21980461 21981440 -133648680 + L1Md_F2 LINE L1 4606 5586 -297 9 752 8182 48 3 2 chr4 21981441 21982435 -133647685 + L1Md_F2 LINE L1 5588 6582 0 9 752 436 327 88 0 chr4 21982443 21982602 -133647518 + Lx8 LINE L1 7121 7293 -180 9 752 274 45 0 43 chr4 21982629 21982675 -133647445 + (CAAT)n Simple_repeat Simple_repeat 4 47 0 9 752 762 268 55 58 chr4 21983255 21983548 -133646572 + ORR1E LTR MaLR 51 342 -17 9 752 395 285 169 0 chr4 21983541 21983713 -133646407 + MER2 DNA MER2_type 143 343 -2 9 752 517 194 0 21 chr4 21984490 21984632 -133645488 + GA-rich Low_complexity Low_complexity 5 143 0 9 752 186 43 0 0 chr4 21984865 21984888 -133645232 + (CG)n Simple_repeat Simple_repeat 1 23 0 9 752 234 0 0 0 chr4 21984888 21984913 -133645207 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 752 1801 158 11 53 chr4 21984913 21985273 -133644847 - Lx LINE L1 -35 6619 6275 9 752 215 150 25 0 chr4 21985788 21985828 -133644292 + GA-rich Low_complexity Low_complexity 2 42 0 9 752 1389 179 61 25 chr4 21985993 21986319 -133643801 + ORR1C2 LTR MaLR 42 379 -5 9 752 563 341 29 67 chr4 21986686 21986760 -133643360 - Lx9 LINE L1 -85 7388 7328 9 752 462 79 0 0 chr4 21986760 21986823 -133643297 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 752 753 299 18 14 chr4 21986823 21987091 -133643029 - Lx9 LINE L1 -203 7441 7059 9 752 258 377 18 0 chr4 21987175 21987342 -133642778 - L1M5 LINE L1 -401 5723 5554 9 752 204 135 27 0 chr4 21988177 21988214 -133641906 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 752 353 309 185 60 chr4 21988700 21988965 -133641155 + MLT1D LTR MaLR 27 324 -181 9 752 2093 133 58 40 chr4 21988998 21989375 -133640745 + ORR1C2 LTR MaLR 1 384 0 9 752 335 286 9 0 chr4 21989375 21989487 -133640633 + MLT1D LTR MaLR 393 505 0 9 752 468 0 0 0 chr4 21989608 21989660 -133640460 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 752 241 318 0 0 chr4 21991169 21991232 -133638888 + (CAG)n Simple_repeat Simple_repeat 1 63 0 9 752 4415 175 9 30 chr4 21992031 21992828 -133637292 + Lx5 LINE L1 6271 7050 0 9 752 252 0 0 0 chr4 21993812 21993840 -133636280 + (T)n Simple_repeat Simple_repeat 1 28 0 9 752 324 143 0 0 chr4 21994587 21994643 -133635477 + (T)n Simple_repeat Simple_repeat 1 56 0 9 752 183 80 0 0 chr4 21995460 21995485 -133634635 + (T)n Simple_repeat Simple_repeat 1 25 0 9 752 1689 209 113 3 chr4 21997677 21998032 -133632088 - ORR1B1 LTR MaLR 0 394 1 9 752 4096 143 35 11 chr4 21998042 21998789 -133631331 - ORR1B1-int LTR MaLR -2 1507 743 9 752 1658 165 132 25 chr4 21998794 21999289 -133630831 - RLTR17 LTR ERVK 0 692 98 9 752 4316 120 44 0 chr4 21999368 22000000 -133630120 + L1VL2 LINE L1 263 922 -5413 9 752 6833 81 34 9 chr4 22000000 22001018 -133629102 + MusHAL1 LINE L1 20 1063 -1649 1 752 1893 167 20 17 chr4 22001018 22001365 -133628755 - ORR1B1 LTR MaLR -40 354 7 2 752 203 194 0 0 chr4 22001665 22001701 -133628419 + A-rich Low_complexity Low_complexity 1 36 0 3 752 2598 164 166 25 chr4 22002881 22003494 -133626626 + L1_Mur3 LINE L1 2260 2959 -2921 4 752 3189 157 9 2 chr4 22003497 22004046 -133626074 + L1_Mur3 LINE L1 3673 4225 -1655 4 752 5642 229 61 55 chr4 22004039 22005017 -133625103 + Lx6 LINE L1 5857 6879 -581 5 752 432 0 0 0 chr4 22005017 22005065 -133625055 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 752 5642 229 61 55 chr4 22005065 22005388 -133624732 + Lx6 LINE L1 6880 7206 -254 5 752 558 43 0 0 chr4 22005388 22005457 -133624663 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 7 752 5642 229 61 55 chr4 22005457 22005614 -133624506 + Lx6 LINE L1 7207 7323 -137 5 752 201 74 0 0 chr4 22005614 22005641 -133624479 + (T)n Simple_repeat Simple_repeat 1 27 0 8 752 668 53 21 0 chr4 22005641 22005735 -133624385 - B1_Mm SINE Alu 0 147 52 9 752 280 240 103 10 chr4 22005735 22005832 -133624288 + Lx7 LINE L1 7591 7696 0 1 752 305 289 128 47 chr4 22005852 22006172 -133623948 + L1ME3B LINE L1 1365 1710 -4532 1 752 532 113 38 0 chr4 22006406 22006512 -133623608 + GA-rich Low_complexity Low_complexity 4 113 0 1 752 804 126 8 0 chr4 22006575 22006702 -133623418 + ORR1B1 LTR MaLR 264 391 -3 1 752 438 336 59 47 chr4 22006716 22007125 -133622995 + L1ME3B LINE L1 5501 5914 -326 1 752 797 30 0 10 chr4 22007428 22007529 -133622591 + (TTTTC)n Simple_repeat Simple_repeat 3 102 0 1 752 380 364 0 8 chr4 22008415 22008534 -133621586 + RSINE1 SINE B4 11 128 -37 1 752 180 0 0 0 chr4 22008547 22008567 -133621553 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 752 237 236 108 54 chr4 22010164 22010294 -133619826 - L1M5 LINE L1 -266 5858 5722 1 752 2392 163 17 165 chr4 22010369 22011090 -133619030 - RMER6C LTR ERVK 0 690 77 1 752 1728 121 48 22 chr4 22011134 22011446 -133618674 - ORR1A4 LTR MaLR -9 320 1 1 752 465 286 121 63 chr4 22011657 22011896 -133618224 + MLT1E1 LTR MaLR 391 643 -11 2 752 653 255 50 5 chr4 22014191 22014392 -133615728 + RMER20B LTR ERVK 235 444 -183 2 752 456 67 0 0 chr4 22015357 22015417 -133614703 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2 752 2526 147 27 10 chr4 22015496 22015908 -133614212 - MTC LTR MaLR 0 421 3 2 752 279 0 0 0 chr4 22016991 22017022 -133613098 + (CCCCCA)n Simple_repeat Simple_repeat 1 31 0 2 752 220 27 54 0 chr4 22018315 22018352 -133611768 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 2 752 1089 52 30 0 chr4 22018352 22018486 -133611634 - B1_Mus1 SINE Alu -10 138 1 2 752 337 200 0 0 chr4 22018511 22018581 -133611539 + ID4_ SINE ID 1 70 -13 2 752 1092 53 0 0 chr4 22018871 22019003 -133611117 - B1_Mus1 SINE Alu -16 132 1 2 753 243 0 0 0 chr4 22020325 22020352 -133609768 + (T)n Simple_repeat Simple_repeat 1 27 0 2 753 315 0 0 0 chr4 22021350 22021385 -133608735 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 753 1283 160 9 9 chr4 22022073 22022294 -133607826 - URR1A DNA MER1_type 0 226 6 3 753 306 0 0 0 chr4 22023259 22023293 -133606827 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 753 760 253 82 5 chr4 22024148 22024343 -133605777 + B3 SINE B2 1 210 -6 3 753 488 268 138 61 chr4 22024597 22024933 -133605187 - MLT1E1A LTR MaLR -294 386 9 3 753 29 28 0 0 chr4 22025006 22025042 -133605078 + AT_rich Low_complexity Low_complexity 1 36 0 3 753 825 217 98 20 chr4 22025054 22025308 -133604812 - Lx9 LINE L1 -54 7590 7317 3 753 464 238 4 20 chr4 22025625 22025747 -133604373 - PB1D10 SINE Alu -8 139 26 3 753 1281 69 0 0 chr4 22027587 22027803 -133602317 + (TTC)n Simple_repeat Simple_repeat 1 216 0 3 753 204 40 0 0 chr4 22029205 22029230 -133600890 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3 753 4127 86 16 2 chr4 22030899 22031462 -133598658 - L1_Mus3 LINE L1 -6 6632 6062 4 753 1546 150 82 13 chr4 22031659 22031976 -133598144 - Lx4B LINE L1 0 7058 6720 4 753 21 57 0 0 chr4 22033392 22033427 -133596693 + AT_rich Low_complexity Low_complexity 1 35 0 4 753 716 225 22 0 chr4 22033431 22033569 -133596551 + B1_Mur1 SINE Alu 6 146 -3 4 753 24 53 0 0 chr4 22033571 22033609 -133596511 + AT_rich Low_complexity Low_complexity 1 38 0 4 753 1124 155 10 0 chr4 22035003 22035197 -133594923 + URR1B DNA MER1_type 1 196 -29 4 753 305 240 36 39 chr4 22035433 22035578 -133594542 + MLT1A1 LTR MaLR 214 408 0 4 753 605 302 7 0 chr4 22035612 22035761 -133594359 + B3A SINE B2 2 151 -47 4 753 299 130 19 0 chr4 22035823 22035877 -133594243 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 4 753 275 362 9 0 chr4 22035877 22035982 -133594138 + MER5A DNA MER1_type 63 168 -21 4 753 213 386 0 0 chr4 22037407 22037477 -133592643 + polypyrimidine Low_complexity Low_complexity 4 73 0 5 753 24 0 0 0 chr4 22040100 22040124 -133589996 + AT_rich Low_complexity Low_complexity 1 24 0 5 753 606 140 0 0 chr4 22041124 22041224 -133588896 + (CA)n Simple_repeat Simple_repeat 2 101 0 5 753 651 281 29 50 chr4 22041226 22041675 -133588445 - MT2A LTR ERVL -49 552 1 5 753 2771 201 78 56 chr4 22042817 22043094 -133587026 - RMER1B Other Other -2 1064 780 5 753 1245 14 0 0 chr4 22043094 22043242 -133586878 + L1Md_T LINE L1 6435 6582 0 5 753 2771 214 88 56 chr4 22043242 22043764 -133586356 - RMER1B Other Other -287 779 170 5 753 1790 239 45 47 chr4 22043732 22044257 -133585863 - RMER1B Other Other -597 469 45 5 753 22 35 0 0 chr4 22045527 22045556 -133584564 + AT_rich Low_complexity Low_complexity 1 29 0 5 753 204 179 0 0 chr4 22045963 22046002 -133584118 + (CCCA)n Simple_repeat Simple_repeat 2 40 0 5 753 710 242 100 78 chr4 22046015 22046284 -133583836 + ORR1D2 LTR MaLR 11 285 -85 5 753 1134 14 21 0 chr4 22046299 22046443 -133583677 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 6 753 230 284 33 33 chr4 22047600 22047691 -133582429 - MTE2b LTR MaLR -14 365 275 6 753 522 115 38 9 chr4 22048596 22048701 -133581419 + CT-rich Low_complexity Low_complexity 4 111 0 6 753 239 269 15 0 chr4 22050071 22050138 -133579982 + (TATG)n Simple_repeat Simple_repeat 3 70 0 6 753 364 299 111 158 chr4 22050142 22050353 -133579767 - B4A SINE B4 -8 284 82 6 753 954 139 0 0 chr4 22050353 22050518 -133579602 + (TTCTC)n Simple_repeat Simple_repeat 2 166 0 6 753 543 53 0 0 chr4 22050520 22050595 -133579525 + (TTTTC)n Simple_repeat Simple_repeat 3 77 0 6 753 364 299 111 158 chr4 22050595 22050678 -133579442 - B4A SINE B4 -211 81 1 6 753 1875 188 28 6 chr4 22050746 22051105 -133579015 + ORR1B2 LTR MaLR 1 367 0 6 753 182 258 16 16 chr4 22051214 22051277 -133578843 - MIR SINE MIR -130 132 70 6 753 408 241 23 94 chr4 22051432 22051560 -133578560 + RSINE1 SINE B4 10 128 -37 6 753 271 292 32 10 chr4 22051784 22051917 -133578203 + MIRb SINE MIR 95 234 -34 7 753 304 301 192 6 chr4 22052188 22052365 -133577755 + MIR SINE MIR 42 251 -11 7 753 249 108 0 0 chr4 22052934 22052971 -133577149 + (CAA)n Simple_repeat Simple_repeat 3 39 0 7 753 280 316 45 13 chr4 22053823 22053980 -133576140 - L1MC4 LINE L1 -177 7865 7704 7 753 461 250 73 42 chr4 22054261 22054453 -133575667 - L1MC4 LINE L1 -647 7395 7198 7 753 351 0 0 0 chr4 22055411 22055450 -133574670 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 753 261 256 177 24 chr4 22056241 22056365 -133573755 + MIRb SINE MIR 125 267 -1 7 753 301 85 35 47 chr4 22056443 22056529 -133573591 + (CAA)n Simple_repeat Simple_repeat 2 86 0 7 753 25 0 0 0 chr4 22056704 22056729 -133573391 + AT_rich Low_complexity Low_complexity 1 25 0 7 753 396 40 0 0 chr4 22056737 22056787 -133573333 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 753 261 0 0 0 chr4 22058684 22058713 -133571407 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 753 216 0 0 0 chr4 22058713 22058736 -133571384 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 753 183 42 0 0 chr4 22059555 22059579 -133570541 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 8 753 225 373 31 8 chr4 22062506 22062633 -133567487 + MamRep137 DNA TcMar? 206 335 -109 8 753 437 337 79 71 chr4 22063432 22063812 -133566308 + MLT1B LTR MaLR 1 383 -7 8 753 317 207 0 12 chr4 22065343 22065426 -133564694 + (CATA)n Simple_repeat Simple_repeat 2 83 0 8 753 737 132 16 0 chr4 22065573 22065702 -133564418 + (TCCC)n Simple_repeat Simple_repeat 3 133 0 8 753 423 299 11 20 chr4 22067719 22067841 -133562279 - PB1D10 SINE Alu 0 117 1 8 753 215 0 67 0 chr4 22068343 22068373 -133561747 + (TCTCTG)n Simple_repeat Simple_repeat 6 37 0 8 753 392 298 105 99 chr4 22068608 22068970 -133561150 - MLT1A1 LTR MaLR -12 396 33 8 753 244 299 78 0 chr4 22069277 22069354 -133560766 + MER58B DNA MER1_type 259 341 0 8 753 263 325 50 91 chr4 22070209 22070434 -133559686 + MLT1A LTR MaLR 102 328 -46 9 753 677 271 115 16 chr4 22070781 22070972 -133559148 - B3 SINE B2 -6 210 1 9 753 212 54 0 51 chr4 22071156 22071195 -133558925 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 9 753 531 45 0 0 chr4 22071195 22071260 -133558860 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 753 495 297 148 84 chr4 22071280 22071530 -133558590 - B4 SINE B4 -13 279 14 9 753 4574 149 59 22 chr4 22071773 22072643 -133557477 + RLTR13D6 LTR ERVK 1 902 0 9 753 301 217 0 0 chr4 22072825 22072885 -133557235 + MTC LTR MaLR 341 400 -21 9 753 1164 82 0 0 chr4 22072926 22073073 -133557047 + B1_Mus2 SINE Alu 1 147 0 9 753 208 49 23 47 chr4 22073077 22073120 -133557000 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 9 753 435 256 153 23 chr4 22073127 22073303 -133556817 - Lx9 LINE L1 -709 6935 6737 9 753 28 0 0 0 chr4 22073336 22073364 -133556756 + AT_rich Low_complexity Low_complexity 1 28 0 1 753 1001 105 14 27 chr4 22073436 22073583 -133556537 - B1_Mus1 SINE Alu 0 148 4 1 753 268 243 57 0 chr4 22074654 22074724 -133555396 - MER94 DNA AcHobo 0 134 61 1 753 928 211 78 0 chr4 22075246 22075426 -133554694 + B3 SINE B2 12 205 -11 1 753 322 242 0 0 chr4 22075712 22075778 -133554342 + ID4 SINE ID 3 68 -15 1 753 624 27 0 0 chr4 22075792 22075866 -133554254 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 753 23 0 0 0 chr4 22076384 22076407 -133553713 + AT_rich Low_complexity Low_complexity 1 23 0 1 753 532 255 151 5 chr4 22076473 22076678 -133553442 - MER33 DNA MER1_type 0 324 90 1 753 396 322 87 0 chr4 22076772 22076955 -133553165 + MER5C1 DNA MER1_type 14 212 -51 1 753 830 274 58 22 chr4 22077493 22077769 -133552351 + B4A SINE B4 1 286 -6 1 753 249 271 0 157 chr4 22077820 22077874 -133552246 + B4A SINE B4 223 275 -17 1 753 180 77 0 0 chr4 22077874 22077900 -133552220 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1 753 249 271 0 157 chr4 22077900 22077928 -133552192 + B4A SINE B4 276 292 0 1 753 180 0 0 0 chr4 22078005 22078025 -133552095 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 753 186 343 14 0 chr4 22081486 22081556 -133548564 + MIRb SINE MIR 177 247 -21 1 753 309 215 24 37 chr4 22082813 22082895 -133547225 + MIR3 SINE MIR 124 204 -4 1 753 1765 323 82 18 chr4 22083049 22083986 -133546134 - Lx8 LINE L1 -9 7464 6468 1 753 1062 278 48 87 chr4 22083993 22084246 -133545874 - ORR1E LTR MaLR -15 344 96 1 753 1174 35 14 0 chr4 22084246 22084387 -133545733 - B1_Mm SINE Alu -3 144 2 1 753 1062 278 48 87 chr4 22084387 22084491 -133545629 - ORR1E LTR MaLR -264 95 1 1 753 1536 246 60 5 chr4 22084817 22085214 -133544906 - MTD LTR MaLR 0 419 1 1 753 259 131 48 16 chr4 22085489 22085551 -133544569 + GA-rich Low_complexity Low_complexity 6 69 0 1 753 1393 230 140 32 chr4 22085661 22086155 -133543965 + Lx9 LINE L1 6914 7460 -184 1 753 366 23 0 0 chr4 22086159 22086202 -133543918 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 753 477 0 0 0 chr4 22086202 22086254 -133543866 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 753 31 0 0 0 chr4 22086327 22086358 -133543762 + AT_rich Low_complexity Low_complexity 1 31 0 1 753 949 162 167 5 chr4 22086572 22086764 -133543356 + URR1B DNA MER1_type 3 225 0 1 753 415 267 138 36 chr4 22086764 22086792 -133543328 - CYRA11_Mm Unknown Y-chromosome -228 384 142 1 753 1461 241 59 30 chr4 22086855 22087262 -133542858 + MTD LTR MaLR 1 419 0 1 753 233 216 20 0 chr4 22087862 22087913 -133542207 - RMER15 LTR ERVL -105 470 419 1 753 21 57 0 0 chr4 22088657 22088692 -133541428 + AT_rich Low_complexity Low_complexity 1 35 0 1 753 1116 64 7 0 chr4 22089191 22089331 -133540789 - B1_Mm SINE Alu -6 141 1 1 753 299 278 127 40 chr4 22089406 22089556 -133540564 - LTR78 LTR ERV1 -2 1302 1140 1 753 647 294 153 29 chr4 22090178 22090508 -133539612 - MTEa LTR MaLR -14 405 1 1 753 3577 298 78 107 chr4 22090512 22090693 -133539427 - MTEa-int LTR MaLR -4 1576 1411 1 753 441 0 0 0 chr4 22090693 22090742 -133539378 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 753 3577 298 78 107 chr4 22090742 22090839 -133539281 - MTEa-int LTR MaLR -170 1410 1396 1 753 180 0 0 0 chr4 22090839 22090859 -133539261 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 753 3577 298 78 107 chr4 22090859 22092202 -133537918 - MTEa-int LTR MaLR -185 1395 1 1 753 1017 279 102 52 chr4 22092202 22092546 -133537574 - MTEa LTR MaLR 0 379 19 1 753 5025 234 43 40 chr4 22092665 22094055 -133536065 + Lx6 LINE L1 5898 7291 -169 1 753 300 53 0 0 chr4 22094063 22094101 -133536019 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1 753 277 326 22 0 chr4 22094158 22094247 -133535873 + Lx7 LINE L1 7208 7298 -398 1 753 42 57 0 0 chr4 22094429 22094499 -133535621 + AT_rich Low_complexity Low_complexity 1 70 0 1 753 572 262 67 11 chr4 22095046 22095286 -133534834 - Lx7 LINE L1 -24 5823 5572 1 753 1127 265 7 41 chr4 22095477 22095772 -133534348 - B4A SINE B4 0 292 8 1 753 396 274 19 0 chr4 22096109 22096215 -133533905 + PB1D10 SINE Alu 2 109 -8 1 753 215 156 22 0 chr4 22096219 22096264 -133533856 + GA-rich Low_complexity Low_complexity 2 47 0 1 753 204 361 88 27 chr4 22097576 22097724 -133532396 - MIR SINE MIR -76 186 30 1 753 207 0 0 0 chr4 22098495 22098518 -133531602 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 1 753 1368 67 0 0 chr4 22098518 22098698 -133531422 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 1 753 225 0 0 0 chr4 22098698 22098723 -133531397 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1 753 229 260 0 0 chr4 22098880 22098930 -133531190 + CT-rich Low_complexity Low_complexity 3 52 0 1 753 285 270 35 119 chr4 22101864 22102007 -133528113 + L2a LINE L2 3289 3419 -7 1 753 24 0 0 0 chr4 22103086 22103110 -133527010 + AT_rich Low_complexity Low_complexity 1 24 0 1 753 237 271 17 0 chr4 22103271 22103330 -133526790 - LTR16B LTR ERVL -352 111 52 1 753 1000 295 84 3 chr4 22103606 22103929 -133526191 - MTD LTR MaLR 0 419 71 1 753 4077 251 70 19 chr4 22103947 22105276 -133524844 - Lx7 LINE L1 -15 7681 6285 1 753 5088 234 106 69 chr4 22105310 22107869 -133522251 - L1_Mur3 LINE L1 -262 5618 2967 1 753 359 281 91 0 chr4 22109588 22109709 -133520411 + MIR SINE MIR 9 140 -122 1 753 716 0 12 0 chr4 22109757 22109841 -133520279 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 1 753 27 49 0 0 chr4 22109848 22109889 -133520231 + AT_rich Low_complexity Low_complexity 1 41 0 1 753 848 165 80 55 chr4 22110008 22110245 -133519875 + RLTR20B3 LTR ERVK 9 251 -326 1 753 486 0 0 0 chr4 22110272 22110326 -133519794 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 753 1919 301 19 30 chr4 22110559 22111282 -133518838 - Lx9 LINE L1 -477 7167 6453 1 753 240 318 11 66 chr4 22113360 22113451 -133516669 - L2a LINE L2 -3 3423 3338 1 753 1777 212 10 60 chr4 22114311 22114467 -133515653 + ORR1B2 LTR MaLR 1 150 -217 1 753 702 34 0 0 chr4 22114467 22114556 -133515564 + (TCTCTG)n Simple_repeat Simple_repeat 3 91 0 1 753 1777 212 10 60 chr4 22114556 22114785 -133515335 + ORR1B2 LTR MaLR 151 367 0 1 753 202 0 91 0 chr4 22115085 22115118 -133515002 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 753 1224 82 0 0 chr4 22116545 22116692 -133513428 - B1_Mus1 SINE Alu 0 148 2 1 753 1348 238 91 38 chr4 22117109 22117507 -133512613 - MTD LTR MaLR 0 419 1 1 753 4547 99 49 2 chr4 22117832 22118459 -133511661 - Lx LINE L1 -6 6648 5992 1 753 350 215 6 94 chr4 22119284 22119443 -133510677 + Lx9 LINE L1 7492 7636 -8 1 753 1086 130 82 68 chr4 22119538 22119745 -133510375 + MTC LTR MaLR 1 210 -211 1 753 968 223 36 18 chr4 22119758 22119982 -133510138 + Lx6 LINE L1 7143 7370 -90 1 753 581 211 0 59 chr4 22120344 22120480 -133509640 + MER106B DNA MER1_type 28 155 -904 1 753 219 91 70 35 chr4 22120484 22120541 -133509579 + (TTTAA)n Simple_repeat Simple_repeat 4 62 0 1 753 236 53 26 0 chr4 22121178 22121216 -133508904 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 753 1218 61 0 7 chr4 22122318 22122466 -133507654 - B1_Mus2 SINE Alu 0 147 1 1 753 7650 66 4 4 chr4 22124077 22125045 -133505075 - L1Md_F2 LINE L1 -2 6580 5613 1 753 17165 118 26 25 chr4 22125056 22128328 -133501792 - L1Md_F2 LINE L1 -2392 3491 217 1 753 4389 123 17 1 chr4 22129694 22130355 -133499765 - Lx2 LINE L1 -537 6460 5790 1 753 3591 107 99 0 chr4 22130355 22130861 -133499259 + Lx LINE L1 6099 6654 0 1 753 349 306 142 61 chr4 22131343 22131629 -133498491 + B4 SINE B4 1 275 -17 1 753 307 283 25 74 chr4 22131668 22131790 -133498330 + MER5B DNA MER1_type 47 162 -16 1 753 580 312 9 47 chr4 22131795 22132010 -133498110 - MER63A DNA AcHobo -3 207 1 1 753 202 368 65 48 chr4 22132109 22132634 -133497486 + L2 LINE L2 2134 2667 -752 1 753 1006 312 39 4 chr4 22132780 22133034 -133497086 + B4A SINE B4 8 270 -22 1 753 390 21 0 0 chr4 22133040 22133087 -133497033 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 753 2931 38 0 3 chr4 22133597 22133942 -133496178 + L1Md_F2 LINE L1 6216 6559 -23 1 753 194 0 39 0 chr4 22133942 22133968 -133496152 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 753 1118 274 65 40 chr4 22133984 22134387 -133495733 - RLTR28B LTR ERVL -52 429 17 1 753 252 0 0 0 chr4 22135663 22135691 -133494429 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 753 430 280 42 116 chr4 22136181 22136492 -133493628 + Charlie18a DNA MER1_type 1 288 -54 1 753 2099 64 0 0 chr4 22136705 22136954 -133493166 - L1_Mus1 LINE L1 -3 6564 6316 1 753 3949 88 0 6 chr4 22136958 22137461 -133492659 - L1Md_T LINE L1 0 6582 6083 1 753 2216 61 25 0 chr4 22137461 22137741 -133492379 + L1Md_F2 LINE L1 5789 6075 -507 1 753 22 0 0 0 chr4 22137917 22137939 -133492181 + AT_rich Low_complexity Low_complexity 1 22 0 1 753 7562 24 0 21 chr4 22138922 22139762 -133490358 + RLTR13B2 LTR ERVK 1 822 0 1 753 249 330 27 91 chr4 22140591 22140701 -133489419 - MER5A1 DNA MER1_type -54 112 10 1 753 180 335 94 49 chr4 22140774 22140997 -133489123 - L3 LINE CR1 -2218 2271 2039 1 753 249 187 0 0 chr4 22141117 22141192 -133488928 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 1 753 644 127 0 29 chr4 22141199 22141337 -133488783 + CT-rich Low_complexity Low_complexity 1 134 0 1 753 198 0 0 0 chr4 22141339 22141361 -133488759 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 753 1350 317 40 29 chr4 22141362 22141807 -133488313 - MLT2B1 LTR ERVL -70 450 1 1 753 1014 9 0 0 chr4 22142433 22142548 -133487572 + (GGAGA)n Simple_repeat Simple_repeat 1 115 0 1 753 858 20 0 0 chr4 22143530 22143630 -133486490 + (TTC)n Simple_repeat Simple_repeat 2 101 0 1 753 369 0 0 0 chr4 22144057 22144098 -133486022 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 753 379 269 0 13 chr4 22144140 22144219 -133485901 - B3A SINE B2 -118 80 3 2 753 463 355 73 86 chr4 22145504 22145957 -133484163 - MLT1J LTR MaLR -65 447 1 2 753 1782 277 102 16 chr4 22146207 22146980 -133483140 + L1MA9 LINE L1 5460 6299 -13 2 753 3331 72 2 2 chr4 22146980 22147387 -133482733 + L1_Mus2 LINE L1 6156 6562 -4 2 753 3085 154 128 17 chr4 22147797 22148084 -133482036 + MT2B LTR ERVL 1 339 -262 2 753 351 0 0 0 chr4 22148084 22148123 -133481997 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 753 3085 154 128 17 chr4 22148123 22148376 -133481744 + MT2B LTR ERVL 340 600 -1 2 753 1065 145 0 0 chr4 22148443 22148622 -133481498 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2 753 1141 281 153 3 chr4 22148772 22149125 -133480995 + MTD LTR MaLR 1 406 -13 2 754 480 300 83 20 chr4 22151453 22151657 -133478463 - Lx8 LINE L1 -9 7464 7248 2 754 521 259 16 13 chr4 22151947 22152123 -133477997 - HAL1-2a_MD LINE L1 -519 2505 2345 2 754 210 247 0 0 chr4 22152126 22152219 -133477901 + (CTG)n Simple_repeat Simple_repeat 1 93 0 2 754 446 272 0 26 chr4 22152398 22152515 -133477605 + PB1D10 SINE Alu 2 115 -2 2 754 3944 208 44 12 chr4 22152577 22153347 -133476773 + Lx5 LINE L1 6251 7045 -5 2 754 468 321 42 0 chr4 22154701 22154891 -133475229 - B3A SINE B2 0 198 1 2 754 430 336 62 0 chr4 22154948 22155094 -133475026 - RSINE1 SINE B4 -9 156 2 2 754 43 35 0 0 chr4 22155414 22155471 -133474649 + AT_rich Low_complexity Low_complexity 1 57 0 2 754 189 0 0 0 chr4 22155816 22155837 -133474283 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 754 4147 112 14 3 chr4 22155906 22156489 -133473631 + Lx3B LINE L1 6382 6970 -3 2 754 23 0 0 0 chr4 22156489 22156512 -133473608 + AT_rich Low_complexity Low_complexity 1 23 0 2 754 396 261 101 36 chr4 22156695 22156834 -133473286 + B4A SINE B4 77 224 -68 2 754 548 202 136 8 chr4 22156711 22156836 -133473284 + B1_Mur2 SINE Alu 9 149 0 2 754 296 312 38 25 chr4 22156851 22157009 -133473111 - L1MC LINE L1 -2037 5845 5686 2 754 306 0 0 0 chr4 22157407 22157441 -133472679 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 754 426 20 0 0 chr4 22157768 22157819 -133472301 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 754 647 44 0 11 chr4 22157840 22157932 -133472188 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 754 315 247 47 12 chr4 22157939 22158025 -133472095 - B1_Mus1 SINE Alu -58 90 2 2 754 293 188 56 56 chr4 22158362 22158452 -133471668 - MTD LTR MaLR 0 379 290 2 754 235 279 15 0 chr4 22158446 22158514 -133471606 - MT2A LTR ERVL -402 131 63 2 754 435 250 41 48 chr4 22158460 22158607 -133471513 - MTD LTR MaLR -273 146 1 2 754 512 278 30 0 chr4 22158607 22158738 -133471382 + RSINE1 SINE B4 22 156 -9 2 754 287 336 13 65 chr4 22158794 22158883 -133471237 + MER58B DNA MER1_type 178 258 -83 2 754 1936 153 18 98 chr4 22158883 22159206 -133470914 + ORR1B2 LTR MaLR 1 309 -58 2 754 1435 89 0 35 chr4 22159206 22159404 -133470716 + B2_Mm2 SINE B2 2 192 -3 2 754 1936 153 18 98 chr4 22159404 22159425 -133470695 + ORR1B2 LTR MaLR 310 317 -50 2 754 3038 65 14 8 chr4 22159425 22159796 -133470324 + L1Md_F2 LINE L1 6198 6570 -12 2 754 1936 153 18 98 chr4 22159796 22159849 -133470271 + ORR1B2 LTR MaLR 318 367 0 2 754 276 240 37 85 chr4 22159849 22159919 -133470201 + MER58B DNA MER1_type 270 335 -6 2 754 245 263 135 10 chr4 22160287 22160383 -133469737 - LTR16B1 LTR ERVL -12 468 361 2 754 233 293 68 107 chr4 22160537 22160640 -133469480 - LTR16B1 LTR ERVL -309 171 73 2 754 450 36 0 0 chr4 22160721 22160777 -133469343 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 754 569 330 17 13 chr4 22161781 22162004 -133468116 + Lx9 LINE L1 7198 7421 -223 2 754 279 0 0 0 chr4 22162004 22162035 -133468085 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 754 454 243 6 6 chr4 22162044 22162222 -133467898 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 754 2766 144 37 47 chr4 22162268 22162755 -133467365 + RLTR45 LTR ERVK 1 482 0 2 754 29 84 0 0 chr4 22162862 22162933 -133467187 + AT_rich Low_complexity Low_complexity 1 71 0 2 754 204 67 0 0 chr4 22163568 22163598 -133466522 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 754 1332 282 97 24 chr4 22163631 22164248 -133465872 - L1MC1 LINE L1 -15 6318 5657 2 754 451 301 62 79 chr4 22164353 22164688 -133465432 + ORR1E LTR MaLR 6 355 -4 2 754 351 0 0 0 chr4 22164794 22164833 -133465287 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 2 754 738 221 7 28 chr4 22165197 22165341 -133464779 - B1F2 SINE Alu 0 149 9 2 754 219 36 0 0 chr4 22165482 22165510 -133464610 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 754 198 103 0 0 chr4 22167179 22167208 -133462912 + (T)n Simple_repeat Simple_repeat 1 29 0 2 754 1736 133 208 25 chr4 22167613 22167969 -133462151 - MTC LTR MaLR 0 421 1 2 754 31 26 0 0 chr4 22167974 22168012 -133462108 + AT_rich Low_complexity Low_complexity 1 38 0 2 754 435 38 0 0 chr4 22168037 22168090 -133462030 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 754 572 239 69 0 chr4 22168090 22168220 -133461900 - B1_Mur4 SINE Alu -7 143 5 2 754 189 0 0 0 chr4 22169072 22169093 -133461027 + (T)n Simple_repeat Simple_repeat 1 21 0 2 754 1216 28 14 0 chr4 22169093 22169237 -133460883 - B1_Mm SINE Alu 0 147 2 2 754 243 306 180 0 chr4 22169244 22169305 -133460815 + MIRb SINE MIR 111 182 -86 2 754 390 21 0 0 chr4 22169305 22169352 -133460768 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 754 243 306 180 0 chr4 22169352 22169401 -133460719 + MIRb SINE MIR 183 240 -28 2 754 387 127 0 0 chr4 22170197 22170260 -133459860 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 754 444 274 38 0 chr4 22170271 22170377 -133459743 - B3A SINE B2 -42 156 47 2 754 1885 112 92 6 chr4 22170377 22170692 -133459428 + RLTR15 LTR ERVK 1 342 -17 2 754 226 325 119 48 chr4 22170976 22171244 -133458876 + L2a LINE L2 2935 3221 -205 2 754 383 326 125 88 chr4 22173829 22174293 -133455827 - L2a LINE L2 -22 3404 2924 2 754 213 286 176 59 chr4 22175274 22175478 -133454642 + MIRb SINE MIR 28 255 -13 2 754 365 294 0 12 chr4 22175881 22175967 -133454153 - B4 SINE B4 -21 271 187 2 754 442 312 92 42 chr4 22176158 22176375 -133453745 + MIR SINE MIR 10 237 -25 2 754 357 187 0 0 chr4 22176564 22176639 -133453481 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 754 4205 56 30 30 chr4 22176897 22177467 -133452653 + L1_Mus1 LINE L1 5998 6567 0 2 754 432 0 0 0 chr4 22177697 22177745 -133452375 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 754 678 25 0 0 chr4 22177745 22177824 -133452296 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 754 1230 27 0 0 chr4 22178986 22179132 -133450988 + (TC)n Simple_repeat Simple_repeat 2 147 0 2 754 448 259 88 30 chr4 22180735 22180998 -133449122 - Lx9 LINE L1 -101 7543 7266 2 754 2940 125 77 1 chr4 22180998 22181654 -133448466 - RMER19A LTR ERVK 0 737 1 2 754 237 180 0 0 chr4 22181704 22181754 -133448366 + T-rich Low_complexity Low_complexity 1 50 0 2 754 4311 82 2 25 chr4 22181758 22182355 -133447765 - L1_Mus1 LINE L1 -2 6565 5983 2 754 552 248 15 22 chr4 22182363 22182499 -133447621 - Lx9 LINE L1 -451 7193 7059 2 754 519 234 0 66 chr4 22182537 22182674 -133447446 - Lx9 LINE L1 -898 6746 6619 2 754 4475 47 0 12 chr4 22182675 22183241 -133446879 - LTRIS2 LTR ERV1 0 564 6 2 754 2464 261 63 38 chr4 22183252 22184648 -133445472 - Lx9 LINE L1 -1033 6611 4999 2 754 679 295 143 4 chr4 22184782 22185047 -133445073 - Tigger7 DNA MER2_type -1967 524 223 2 754 357 230 170 0 chr4 22185067 22185202 -133444918 + Tigger7 DNA MER2_type 2259 2416 -75 2 754 800 303 77 23 chr4 22185793 22186185 -133443935 - Lx8 LINE L1 0 7473 7061 2 754 453 313 101 24 chr4 22186222 22186369 -133443751 - Lx9 LINE L1 -1182 6462 6307 2 754 288 0 0 0 chr4 22186369 22186401 -133443719 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 754 453 313 101 24 chr4 22186401 22186551 -133443569 - Lx9 LINE L1 -1338 6306 6142 2 754 1616 142 184 39 chr4 22186645 22186825 -133443295 + RMER17C LTR ERVK 1 179 -231 2 754 881 65 0 16 chr4 22186825 22186951 -133443169 + (TCTCCC)n Simple_repeat Simple_repeat 5 128 0 2 754 1616 142 184 39 chr4 22186951 22187128 -133442992 + RMER17C LTR ERVK 180 409 -1 2 754 25 0 0 0 chr4 22187629 22187654 -133442466 + AT_rich Low_complexity Low_complexity 1 25 0 2 754 862 200 20 2 chr4 22187884 22188071 -133442049 - B3 SINE B2 0 198 1 2 754 546 64 10 31 chr4 22188084 22188181 -133441939 - L1Md_F3 LINE L1 -3 6581 6487 2 754 33 0 0 0 chr4 22188294 22188327 -133441793 + AT_rich Low_complexity Low_complexity 1 33 0 2 754 2509 158 14 5 chr4 22188353 22188774 -133441346 - Lx4B LINE L1 -120 6938 6514 2 754 848 223 112 0 chr4 22188793 22188981 -133441139 - B3 SINE B2 -6 210 2 2 754 630 210 76 0 chr4 22189062 22189181 -133440939 - B1_Mur2 SINE Alu -5 144 17 2 754 309 321 63 56 chr4 22189181 22189204 -133440916 - ID_B1 SINE B4 -5 219 77 2 754 2130 275 40 58 chr4 22189274 22190123 -133439997 - Lx8 LINE L1 -208 7265 6432 2 754 1068 88 0 0 chr4 22190490 22190626 -133439494 + B1_Mus1 SINE Alu 1 136 -12 2 754 380 20 0 20 chr4 22190644 22190694 -133439426 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 2 754 370 309 51 14 chr4 22190760 22190898 -133439222 - B1F SINE Alu -6 143 1 2 754 675 279 0 0 chr4 22191882 22192018 -133438102 + RSINE1 SINE B4 6 141 -24 2 754 353 110 14 0 chr4 22192018 22192091 -133438029 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 754 216 86 0 0 chr4 22192243 22192278 -133437842 + (T)n Simple_repeat Simple_repeat 1 35 0 2 754 3085 83 24 2 chr4 22192293 22192718 -133437402 - L1_Mus3 LINE L1 -1 6637 6204 2 754 1107 274 100 10 chr4 22194927 22195237 -133434883 - MLT1A0 LTR MaLR 0 365 28 2 754 352 158 0 26 chr4 22195679 22195757 -133434363 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 754 282 56 0 0 chr4 22197426 22197462 -133432658 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 754 376 387 129 32 chr4 22197702 22197982 -133432138 + MLT1A0 LTR MaLR 1 307 -58 3 754 257 300 33 22 chr4 22198033 22198125 -133431995 - MLT1A1 LTR MaLR -4 404 312 3 754 240 314 166 34 chr4 22198168 22198343 -133431777 - ORR1E LTR MaLR -109 250 53 3 754 204 212 0 0 chr4 22199390 22199456 -133430664 + T-rich Low_complexity Low_complexity 1 66 0 3 754 1169 75 0 0 chr4 22199477 22199624 -133430496 - B1_Mus1 SINE Alu 0 148 2 3 754 200 235 15 0 chr4 22200125 22200193 -133429927 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 754 246 323 94 0 chr4 22200939 22201035 -133429085 + MT2B LTR ERVL 137 241 -360 3 754 418 275 106 8 chr4 22200957 22201089 -133429031 + ID_B1 SINE B4 79 223 -1 3 754 538 345 36 0 chr4 22202039 22202288 -133427832 - Lx8 LINE L1 -244 7229 6972 3 754 321 26 0 0 chr4 22202480 22202518 -133427602 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 754 600 14 0 0 chr4 22202518 22202586 -133427534 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 754 2529 106 145 0 chr4 22203598 22204053 -133426067 + RLTR47_MM LTR ERV1 9 529 -3 3 754 846 211 9 0 chr4 22204054 22204358 -133425762 + CT-rich Low_complexity Low_complexity 1 306 0 3 754 186 89 89 0 chr4 22204372 22204417 -133425703 + CT-rich Low_complexity Low_complexity 2 50 0 3 754 22 0 0 0 chr4 22204564 22204586 -133425534 + AT_rich Low_complexity Low_complexity 1 22 0 3 754 2054 70 15 4 chr4 22204586 22204859 -133425261 - L1_Mus1 LINE L1 0 6567 6292 3 754 5323 80 1 1 chr4 22204859 22205613 -133424507 - L1_Mm LINE L1 -705 5178 4425 3 754 258 32 0 0 chr4 22205875 22205906 -133424214 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 754 2661 119 2 97 chr4 22206184 22206659 -133423461 + RLTR23 LTR ERV1 1 430 0 3 754 544 354 6 20 chr4 22207185 22207398 -133422722 - B3A SINE B2 -7 209 3 3 754 570 219 68 115 chr4 22207442 22207633 -133422487 - B3A SINE B2 -16 182 1 3 754 279 269 117 17 chr4 22207910 22208141 -133421979 + L1MA6 LINE L1 5949 6202 -98 3 754 411 177 125 12 chr4 22208180 22208260 -133421860 + 5S rRNA rRNA 2 90 -31 3 754 26 50 0 0 chr4 22208289 22208329 -133421791 + AT_rich Low_complexity Low_complexity 1 40 0 3 754 314 347 30 52 chr4 22208533 22208776 -133421344 + MIR SINE MIR 36 260 -2 3 754 354 304 65 33 chr4 22209144 22209296 -133420824 - MLT1A0 LTR MaLR -4 386 229 3 754 4879 176 76 35 chr4 22209444 22210484 -133419636 - RLTR25A LTR ERVK 0 1103 21 3 754 1879 240 83 8 chr4 22210744 22211336 -133418784 - L1_Mur3 LINE L1 -75 5805 5170 3 754 4004 220 61 31 chr4 22211345 22212534 -133417586 - L1_Mur3 LINE L1 -2417 3463 2240 3 754 725 312 101 21 chr4 22212708 22212996 -133417124 - Tigger7 DNA MER2_type -2156 335 25 3 754 249 57 0 0 chr4 22213323 22213358 -133416762 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 754 277 261 11 32 chr4 22214871 22214966 -133415154 + L1_Mur3 LINE L1 854 946 -6782 3 754 383 242 0 0 chr4 22214971 22215091 -133415029 + L1_Mur3 LINE L1 1150 1269 -6459 3 754 492 106 300 58 chr4 22215091 22215211 -133414909 - B2_Mm2 SINE B2 0 195 47 3 754 1333 84 22 0 chr4 22215238 22215416 -133414704 - B2_Mm2 SINE B2 -13 182 1 3 754 3703 194 68 44 chr4 22215505 22215897 -133414223 + L1_Mur3 LINE L1 2968 3375 -2505 3 754 361 54 36 0 chr4 22215897 22215953 -133414167 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 754 3703 194 68 44 chr4 22215953 22216611 -133413509 + L1_Mur3 LINE L1 3376 4043 -1837 3 754 2721 164 123 15 chr4 22216603 22217278 -133412842 + L1_Mur3 LINE L1 4461 5208 -672 3 754 795 21 0 0 chr4 22217285 22217378 -133412742 + (TATATG)n Simple_repeat Simple_repeat 5 97 0 3 754 213 39 0 0 chr4 22217393 22217419 -133412701 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 754 518 221 7 35 chr4 22217423 22217564 -133412556 + L1M2 LINE L1 4900 5036 -1107 3 754 262 241 38 34 chr4 22217767 22217889 -133412231 + L1_Rod LINE L1 4999 5133 -747 3 754 422 326 21 48 chr4 22217891 22218036 -133412084 + B4A SINE B4 4 144 -148 3 754 921 271 58 66 chr4 22218351 22218714 -133411406 - MLT1A LTR MaLR -7 367 8 3 754 558 294 28 22 chr4 22218978 22219159 -133410961 + B3A SINE B2 1 182 -16 3 754 1204 188 35 0 chr4 22219201 22219430 -133410690 + MER2 DNA MER2_type 86 322 -23 3 754 461 291 45 45 chr4 22219732 22219952 -133410168 - MIRc SINE MIR -30 238 19 3 754 438 20 0 0 chr4 22220327 22220378 -133409742 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 754 21 0 0 0 chr4 22220478 22220499 -133409621 + AT_rich Low_complexity Low_complexity 1 21 0 3 754 2217 137 20 57 chr4 22221614 22221770 -133408350 + ORR1B1 LTR MaLR 3 157 -237 3 754 432 51 0 0 chr4 22221770 22221829 -133408291 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 754 2217 137 20 57 chr4 22221829 22222076 -133408044 + ORR1B1 LTR MaLR 158 391 -3 3 754 339 85 0 0 chr4 22222182 22222229 -133407891 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 3 754 875 347 13 43 chr4 22222330 22222631 -133407489 + B4A SINE B4 1 292 0 3 754 201 74 0 0 chr4 22222649 22222676 -133407444 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 754 641 284 135 4 chr4 22222867 22223111 -133407009 + MER21B LTR ERV1 318 593 -270 3 754 924 117 117 6 chr4 22223297 22223477 -133406643 - L1_Mur2 LINE L1 -757 5120 4921 3 754 727 265 63 60 chr4 22223479 22223764 -133406356 - MLT1B LTR MaLR 0 390 105 3 754 1238 41 0 0 chr4 22223806 22223953 -133406167 - B1_Mus1 SINE Alu 0 148 2 3 754 296 262 25 0 chr4 22224010 22224090 -133406030 + Lx8 LINE L1 6097 6178 -1295 3 754 426 65 0 0 chr4 22224136 22224198 -133405922 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 754 1619 185 101 50 chr4 22224198 22224574 -133405546 + MTC LTR MaLR 27 421 0 3 754 3192 264 98 20 chr4 22224592 22225686 -133404434 + Lx8 LINE L1 6275 7453 -20 3 754 598 217 41 16 chr4 22225842 22225964 -133404156 - MTE2b LTR MaLR -254 125 1 3 754 189 320 48 60 chr4 22227094 22227177 -133402943 + MIR3 SINE MIR 5 86 -122 3 754 229 280 67 0 chr4 22229966 22230041 -133400079 + ID4 SINE ID 2 81 -2 3 754 200 260 109 55 chr4 22230676 22230786 -133399334 + MIRm SINE MIR 54 169 -107 3 754 643 352 39 45 chr4 22231176 22231488 -133398632 - LTR55 LTR ERV -96 452 143 3 754 591 298 49 39 chr4 22231579 22231865 -133398255 - B4A SINE B4 -3 289 1 3 754 249 250 42 42 chr4 22231929 22232000 -133398120 - LTR55 LTR ERV -466 82 12 3 754 304 372 32 16 chr4 22232925 22233048 -133397072 - MLT1K LTR MaLR -326 269 145 3 754 620 196 128 67 chr4 22233441 22233621 -133396499 + RMER19B LTR ERVK 341 531 -371 3 754 2410 40 0 0 chr4 22233621 22233920 -133396200 + L1Md_F2 LINE L1 5613 5911 -671 3 754 368 177 0 25 chr4 22233920 22234001 -133396119 - MYSERV16_I-int LTR ERVK -2247 79 1 3 754 472 266 15 61 chr4 22234183 22234315 -133395805 - B1_Mur3 SINE Alu -6 143 18 3 754 28 0 0 0 chr4 22234432 22234460 -133395660 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 377 164 155 86 chr4 22234787 22234974 -133395146 - MYSERV6-int LTR ERVK -2305 6654 6455 3 754 275 241 0 17 chr4 22235128 22235187 -133394933 - B1_Mus2 SINE Alu -44 103 46 3 754 230 319 0 28 chr4 22235129 22235200 -133394920 - RLTR25B LTR ERVK -526 502 434 3 754 798 313 130 36 chr4 22235572 22235865 -133394255 + MER89 LTR ERV1 165 484 -75 3 754 879 61 0 0 chr4 22235865 22235979 -133394141 + (TCTCCC)n Simple_repeat Simple_repeat 6 119 0 3 754 798 313 130 36 chr4 22235979 22236046 -133394074 + MER89 LTR ERV1 485 558 -1 3 754 313 265 30 0 chr4 22236207 22236281 -133393839 - ID2 SINE ID -6 77 2 3 754 184 352 108 54 chr4 22236294 22236423 -133393697 - MIRb SINE MIR -86 182 47 3 754 321 249 13 84 chr4 22237454 22237704 -133392416 + RMER17A LTR ERVK 232 474 -415 3 754 210 143 0 0 chr4 22237892 22237927 -133392193 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 3 754 347 202 12 0 chr4 22238151 22238235 -133391885 + A-rich Low_complexity Low_complexity 2 86 0 3 754 319 273 73 47 chr4 22238252 22238401 -133391719 + B3 SINE B2 58 193 -2 3 754 257 303 62 103 chr4 22240360 22240555 -133389565 + MER77 LTR ERVL 9 195 -412 3 754 334 294 62 121 chr4 22240799 22240967 -133389153 + MLT1A0 LTR MaLR 205 372 -2 3 754 1847 167 73 0 chr4 22240996 22241350 -133388770 + ORR1C2 LTR MaLR 5 384 0 3 754 384 335 77 6 chr4 22241377 22241545 -133388575 + MER77 LTR ERVL 362 541 -66 3 754 273 331 73 30 chr4 22241842 22242007 -133388113 + L2c LINE L2 2946 3117 -270 3 754 1421 69 11 0 chr4 22242883 22243072 -133387048 - B2_Mm1t SINE B2 -1 192 2 3 754 312 342 82 39 chr4 22243282 22243489 -133386631 - MLT1K LTR MaLR -379 216 1 3 754 530 190 101 23 chr4 22243587 22243716 -133386404 + B1F2 SINE Alu 10 148 -1 3 754 475 281 98 0 chr4 22243875 22244028 -133386092 + ID_B1 SINE B4 2 169 -55 3 754 436 254 144 34 chr4 22244029 22244237 -133385883 + L1M2 LINE L1 4502 4732 -1411 3 754 779 286 102 71 chr4 22244487 22245106 -133385014 - RMER13A LTR ERVK -211 697 1 3 754 1123 65 0 0 chr4 22245496 22245634 -133384486 + B1_Mus2 SINE Alu 1 138 -9 3 754 329 43 0 21 chr4 22245634 22245682 -133384438 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 754 353 396 21 8 chr4 22246236 22246478 -133383642 - L1M5 LINE L1 -2496 3650 3406 3 754 31 44 0 0 chr4 22246779 22246824 -133383296 + AT_rich Low_complexity Low_complexity 1 45 0 3 754 211 333 144 19 chr4 22248658 22248762 -133381358 - PB1D10 SINE Alu 0 117 1 3 754 228 143 0 0 chr4 22249385 22249427 -133380693 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 754 258 317 0 0 chr4 22249483 22249543 -133380577 - RSINE1 SINE B4 -104 61 2 3 754 286 344 73 81 chr4 22249560 22249794 -133380326 + MLT1G1 LTR MaLR 97 328 -251 3 754 324 340 12 47 chr4 22250282 22250452 -133379668 + RSINE1 SINE B4 2 165 0 3 754 362 311 76 11 chr4 22250573 22250758 -133379362 + L1_Mur3 LINE L1 363 559 -7169 3 754 2035 187 17 9 chr4 22250755 22251309 -133378811 + L1_Mur3 LINE L1 860 1417 -4463 3 754 429 109 0 0 chr4 22251309 22251373 -133378747 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 754 1143 180 24 17 chr4 22251373 22251449 -133378671 + L1_Mur3 LINE L1 1418 1497 -4383 3 754 26358 99 27 13 chr4 22251497 22256591 -133373529 + L1Md_F2 LINE L1 464 5585 -298 4 754 7143 87 8 4 chr4 22256592 22257572 -133372548 + L1Md_F2 LINE L1 5587 6570 -12 4 754 8012 221 84 11 chr4 22257591 22261226 -133368894 + Lx6 LINE L1 3500 7405 -55 4 754 3374 28 5 3 chr4 22261238 22261630 -133368490 - MTA_Mm LTR MaLR -1 395 3 4 754 189 0 0 0 chr4 22261631 22261652 -133368468 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 754 28 29 0 0 chr4 22261699 22261734 -133368386 + AT_rich Low_complexity Low_complexity 1 35 0 4 754 37 0 0 0 chr4 22265050 22265087 -133365033 + AT_rich Low_complexity Low_complexity 1 37 0 4 754 2720 283 54 32 chr4 22265341 22266362 -133363758 - Lx9 LINE L1 -221 7423 6381 4 754 1825 169 58 0 chr4 22266373 22266717 -133363403 - L1_Mur3 LINE L1 -187 5693 5330 4 754 334 62 0 7 chr4 22266778 22266840 -133363280 - L1_Mus2 LINE L1 -1 6581 6519 4 754 4529 126 57 5 chr4 22266840 22267598 -133362522 - Lx2 LINE L1 -8 6989 6193 4 754 3177 155 174 1 chr4 22267598 22268316 -133361804 - L1_Mur3 LINE L1 -1213 4667 3826 4 754 451 280 7 0 chr4 22268324 22268474 -133361646 - L1_Rod LINE L1 -916 4931 4781 4 754 1287 263 67 14 chr4 22268485 22269035 -133361085 - L1_Rod LINE L1 -1626 4221 3657 4 754 495 236 212 63 chr4 22269096 22269353 -133360767 + ORR1D1 LTR MaLR 8 317 -57 4 754 945 307 22 50 chr4 22269353 22269716 -133360404 - ORR1E LTR MaLR -2 357 5 4 754 495 236 212 63 chr4 22269716 22269774 -133360346 + ORR1D1 LTR MaLR 318 370 -4 4 754 198 0 0 0 chr4 22270379 22270401 -133359719 + (TCTA)n Simple_repeat Simple_repeat 4 25 0 4 754 1662 230 76 2 chr4 22270402 22270795 -133359325 - Lx5 LINE L1 -3 7047 6626 4 754 4032 55 4 4 chr4 22271240 22271746 -133358374 + L1Md_F2 LINE L1 6065 6570 -12 4 754 216 271 0 0 chr4 22272004 22272052 -133358068 + ID2 SINE ID 23 70 -13 4 754 194 277 85 98 chr4 22272657 22272821 -133357299 + MIR3 SINE MIR 32 193 -15 4 754 379 304 171 22 chr4 22272870 22273092 -133357028 - MIRc SINE MIR 0 268 14 4 754 191 297 130 23 chr4 22273171 22273302 -133356818 + MIR3 SINE MIR 21 165 -43 4 754 474 265 21 49 chr4 22273577 22273720 -133356400 + B1F SINE Alu 9 147 -2 4 754 657 208 5 0 chr4 22273803 22274256 -133355864 + (CA)n Simple_repeat Simple_repeat 1 455 0 4 754 605 142 8 0 chr4 22274296 22274423 -133355697 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 754 543 130 0 0 chr4 22274434 22274534 -133355586 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 754 26 30 0 0 chr4 22275482 22275515 -133354605 + AT_rich Low_complexity Low_complexity 1 33 0 4 754 261 0 0 0 chr4 22275553 22275582 -133354538 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 754 256 261 92 21 chr4 22275602 22275743 -133354377 + L1ME3A LINE L1 5825 5975 -198 4 754 948 246 11 0 chr4 22275743 22275934 -133354186 + B3 SINE B2 2 194 -22 4 754 3067 108 36 19 chr4 22275958 22276429 -133353691 - L1_Mus4 LINE L1 -7 6647 6169 4 754 2485 111 0 30 chr4 22276429 22276799 -133353321 + RLTR10D LTR ERVK 1 359 0 4 754 5343 55 38 10 chr4 22276799 22277518 -133352602 + IAP-d-int LTR ERVK 1 739 -5803 4 754 22934 53 45 7 chr4 22277585 22280803 -133349317 + IAP-d-int LTR ERVK 3188 6527 -15 4 754 2537 98 3 38 chr4 22280813 22281185 -133348935 + RLTR10D LTR ERVK 1 359 0 4 754 4278 111 5 0 chr4 22281185 22281959 -133348161 - L1_Mus4 LINE L1 -457 6179 5397 4 754 251 278 117 68 chr4 22281976 22282138 -133347982 + L1ME3A LINE L1 5963 6132 -41 4 94 416 308 13 40 chr4 22282167 22282316 -133347804 - ID_B1 SINE B4 0 224 80 4 755 4119 116 33 2 chr4 22282364 22282971 -133347149 + Lx4A LINE L1 6433 7058 0 4 755 29 0 0 0 chr4 22282971 22283000 -133347120 + AT_rich Low_complexity Low_complexity 1 29 0 4 755 21 0 0 0 chr4 22283161 22283182 -133346938 + AT_rich Low_complexity Low_complexity 1 21 0 4 755 289 214 47 84 chr4 22283301 22283316 -133346804 - MT2B LTR ERVL -345 256 203 4 755 460 161 0 0 chr4 22283316 22283397 -133346723 - PB1D9 SINE Alu -39 81 1 4 755 289 214 47 84 chr4 22283397 22283408 -133346712 - MT2B LTR ERVL -345 202 154 4 755 903 264 110 9 chr4 22283535 22283871 -133346249 + ORR1D2 LTR MaLR 1 370 0 4 755 526 257 45 26 chr4 22283975 22284107 -133346013 + B3A SINE B2 40 176 -22 4 755 270 0 0 0 chr4 22284107 22284137 -133345983 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 755 526 257 45 26 chr4 22284137 22284160 -133345960 + B3A SINE B2 177 198 0 4 755 190 70 0 85 chr4 22284638 22284685 -133345435 + (CCCCG)n Simple_repeat Simple_repeat 5 47 0 4 755 22 0 0 0 chr4 22284717 22284739 -133345381 + GC_rich Low_complexity Low_complexity 1 22 0 4 755 21 0 0 0 chr4 22284885 22284906 -133345214 + GC_rich Low_complexity Low_complexity 1 21 0 4 755 257 237 58 58 chr4 22286187 22286290 -133343830 - PB1D9 SINE Alu 0 120 18 4 755 663 296 95 77 chr4 22287001 22287338 -133342782 + Tigger7 DNA MER2_type 52 394 -2097 4 755 874 256 60 0 chr4 22287587 22287786 -133342334 + B3 SINE B2 1 211 -5 4 755 260 255 167 0 chr4 22287881 22287983 -133342137 - LTR40a LTR ERVL 0 462 344 4 755 332 307 34 41 chr4 22288077 22288223 -133341897 - LTR40a LTR ERVL -273 246 102 4 755 273 262 92 12 chr4 22288292 22288482 -133341638 - L1M5 LINE L1 -644 5480 5265 4 755 625 241 29 73 chr4 22288538 22288744 -133341376 - B3A SINE B2 0 198 2 4 755 38 0 0 0 chr4 22288805 22288843 -133341277 + AT_rich Low_complexity Low_complexity 1 38 0 4 755 261 0 0 0 chr4 22289105 22289134 -133340986 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 755 288 0 0 0 chr4 22289134 22289165 -133340955 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 755 3177 153 50 0 chr4 22289194 22289736 -133340384 + Lx2B LINE L1 6428 6996 -4 4 755 255 300 103 122 chr4 22290467 22290729 -133339391 - ORR1E LTR MaLR -13 346 90 4 755 520 291 11 84 chr4 22290882 22291073 -133339047 - B3A SINE B2 -16 182 6 4 755 1186 98 37 37 chr4 22291184 22291375 -133338745 - B2_Mm2 SINE B2 -2 193 3 4 755 432 0 0 0 chr4 22291557 22291605 -133338515 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 755 1771 246 56 22 chr4 22293440 22294040 -133336080 + RLTR18 LTR ERVK 1 541 -75 4 755 25 0 0 0 chr4 22296122 22296147 -133333973 + AT_rich Low_complexity Low_complexity 1 25 0 4 755 7425 104 19 6 chr4 22296157 22297543 -133332577 - L1_Mus4 LINE L1 0 6636 5289 4 755 4251 65 23 7 chr4 22297558 22298116 -133332004 - L1Md_F2 LINE L1 -3 6579 6013 4 755 1331 111 20 0 chr4 22298116 22298314 -133331806 + L1_Mm LINE L1 4638 4839 -1044 4 755 1050 171 5 10 chr4 22298291 22298498 -133331622 - L1_Mur2 LINE L1 -580 5297 5092 4 755 10481 73 14 42 chr4 22298506 22299803 -133330317 - L1Md_F2 LINE L1 0 6582 5282 4 755 2108 16 20 4 chr4 22299803 22300050 -133330070 - L1Md_A LINE L1 0 6582 6332 4 755 10481 161 8 171 chr4 22300050 22301045 -133329075 - L1Md_F2 LINE L1 -596 5281 4674 4 755 297 0 0 0 chr4 22301045 22301078 -133329042 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 755 10481 161 8 171 chr4 22301078 22302201 -133327919 - L1Md_F2 LINE L1 -1204 4673 3593 4 755 2220 89 7 0 chr4 22302198 22302489 -133327631 - Lx LINE L1 -209 6445 6153 4 755 22 35 0 0 chr4 22303278 22303307 -133326813 + AT_rich Low_complexity Low_complexity 1 29 0 4 755 197 59 59 0 chr4 22303568 22303602 -133326518 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 4 755 285 29 0 0 chr4 22304834 22304868 -133325252 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 755 319 290 79 42 chr4 22305109 22305325 -133324795 - L1MC LINE L1 -2062 5820 5597 4 755 275 188 116 12 chr4 22306356 22306442 -133323678 - PB1D9 SINE Alu 0 120 26 4 755 1025 263 30 7 chr4 22308369 22308664 -133321456 + L1MA4 LINE L1 5632 5933 -367 4 755 22 0 0 0 chr4 22309369 22309391 -133320729 + AT_rich Low_complexity Low_complexity 1 22 0 4 755 5855 214 59 10 chr4 22309406 22309966 -133320154 - Lx6 LINE L1 -3 7457 6895 4 755 300 27 0 0 chr4 22309966 22310003 -133320117 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 4 755 5855 214 59 10 chr4 22310003 22310663 -133319457 - Lx6 LINE L1 -566 6894 6178 4 755 2065 172 5 75 chr4 22310667 22311082 -133319038 - ORR1B1 LTR MaLR -8 386 1 4 755 655 249 128 18 chr4 22311082 22311356 -133318764 - Lx7 LINE L1 -1503 6193 5890 4 755 1900 177 15 78 chr4 22311356 22311755 -133318365 + ORR1C1 LTR MaLR 5 378 0 4 755 24 0 0 0 chr4 22311796 22311820 -133318300 + AT_rich Low_complexity Low_complexity 1 24 0 4 755 287 219 171 0 chr4 22312002 22312081 -133318039 + B4 SINE B4 3 95 -197 4 755 1740 132 34 49 chr4 22312081 22312407 -133317713 - ORR1A4 LTR MaLR 0 329 9 4 755 232 180 19 39 chr4 22312415 22312467 -133317653 + B4 SINE B4 91 141 -151 4 755 1200 105 17 0 chr4 22315026 22315198 -133314922 - Lx LINE L1 -673 5981 5807 4 755 271 274 47 31 chr4 22315474 22315602 -133314518 + L1MC4a LINE L1 5809 5938 -1944 4 755 191 88 0 29 chr4 22315627 22315662 -133314458 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 755 443 339 137 19 chr4 22315728 22316197 -133313923 - RLTR11A2 LTR ERVK -3 524 1 4 755 387 317 99 9 chr4 22316308 22316531 -133313589 - MER31A LTR ERV1 -77 408 166 4 755 315 0 0 0 chr4 22317735 22317770 -133312350 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 755 261 331 39 8 chr4 22318855 22318983 -133311137 - B1F1 SINE Alu -17 132 1 4 755 411 271 133 21 chr4 22319483 22319626 -133310494 + RSINE1 SINE B4 2 160 -5 4 755 675 285 90 50 chr4 22320980 22321257 -133308863 - ORR1E LTR MaLR -10 349 62 4 755 1484 231 180 24 chr4 22321321 22321797 -133308323 + Lx6 LINE L1 6889 7456 -4 4 755 1392 188 138 14 chr4 22322689 22323158 -133306962 + Lx7 LINE L1 7110 7696 0 4 755 1068 269 19 25 chr4 22323180 22323496 -133306624 - MTE2b LTR MaLR -8 371 58 4 755 234 241 193 0 chr4 22323532 22323615 -133306505 - MTE2b LTR MaLR -278 101 3 4 755 2699 227 68 88 chr4 22324069 22325223 -133304897 + RMER1B Other Other 1 1061 -5 4 755 274 369 53 18 chr4 22325431 22325602 -133304518 + L2a LINE L2 2744 2920 -499 4 755 348 283 127 72 chr4 22325713 22325978 -133304142 + L2a LINE L2 3132 3426 0 4 755 300 358 7 22 chr4 22326292 22326429 -133303691 + RSINE1 SINE B4 2 136 -29 4 755 764 86 62 0 chr4 22326610 22326738 -133303382 + ORR1C1 LTR MaLR 1 136 -242 4 755 1892 149 35 9 chr4 22326732 22327077 -133303043 + ORR1B1 LTR MaLR 41 394 0 4 755 8549 155 80 98 chr4 22327077 22327624 -133302496 + ORR1B1-int LTR MaLR 1 590 -1373 4 755 1233 42 0 0 chr4 22327624 22327768 -133302352 + B1_Mus2 SINE Alu 2 145 -2 4 755 8549 155 80 98 chr4 22327768 22329219 -133300901 + ORR1B1-int LTR MaLR 591 1963 0 4 755 1532 200 12 59 chr4 22329220 22329560 -133300560 + ORR1B1 LTR MaLR 2 325 -4 4 755 756 219 24 12 chr4 22329566 22329732 -133300388 + ORR1B2 LTR MaLR 98 265 -102 4 755 213 121 0 0 chr4 22329797 22329830 -133300290 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 755 2025 80 195 16 chr4 22329883 22330252 -133299868 - RLTR44E LTR ERVK -13 439 5 4 755 1247 41 0 0 chr4 22331221 22331368 -133298752 + B1_Mus2 SINE Alu 1 147 0 5 755 238 352 137 0 chr4 22332994 22333133 -133296987 + MIR SINE MIR 96 253 -9 5 755 2558 184 10 11 chr4 22333536 22334176 -133295944 - Lx4B LINE L1 -1098 5960 5349 5 755 423 0 0 0 chr4 22334282 22334329 -133295791 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 755 180 111 0 0 chr4 22334384 22334411 -133295709 + (T)n Simple_repeat Simple_repeat 1 27 0 5 755 2496 39 3 0 chr4 22334428 22334734 -133295386 - L1Md_F2 LINE L1 -1 6581 6275 5 755 425 343 0 0 chr4 22334819 22334921 -133295199 - PB1 SINE Alu -20 107 6 5 755 189 0 0 0 chr4 22335521 22335542 -133294578 + (T)n Simple_repeat Simple_repeat 1 21 0 5 755 590 258 26 13 chr4 22336339 22336492 -133293628 + ORR1D2 LTR MaLR 32 186 -184 5 755 1646 253 57 3 chr4 22336476 22336860 -133293260 - MTD LTR MaLR -14 405 1 5 755 361 231 187 0 chr4 22336861 22336952 -133293168 + ORR1D2 LTR MaLR 270 377 -2 5 755 303 235 35 49 chr4 22337333 22337476 -133292644 - Lx4B LINE L1 -8 7050 6910 5 755 391 243 0 10 chr4 22337492 22337596 -133292524 - L1_Mur3 LINE L1 -54 5826 5724 5 755 1259 302 18 42 chr4 22337683 22338180 -133291940 - Lx9 LINE L1 -321 7323 6839 5 755 26 0 0 0 chr4 22338544 22338570 -133291550 + AT_rich Low_complexity Low_complexity 1 26 0 5 755 30614 24 0 0 chr4 22338968 22342754 -133287366 + L1Md_T LINE L1 1800 5586 -297 5 755 8389 37 0 0 chr4 22342754 22343750 -133286370 + L1Md_T LINE L1 5587 6582 0 5 755 392 371 80 48 chr4 22343877 22343899 -133286221 - MER58A DNA MER1_type -30 194 173 5 755 1213 188 4 4 chr4 22343899 22344124 -133285996 - URR1B DNA MER1_type 0 225 1 5 755 392 371 80 48 chr4 22344124 22344288 -133285832 - MER58A DNA MER1_type -52 172 2 5 755 1573 239 40 13 chr4 22344884 22345262 -133284858 + Lx6 LINE L1 6896 7283 -177 5 755 228 67 0 0 chr4 22345443 22345473 -133284647 + (T)n Simple_repeat Simple_repeat 1 30 0 5 755 207 237 32 21 chr4 22345475 22345570 -133284550 + (GTTTG)n Simple_repeat Simple_repeat 5 100 0 5 755 32 57 0 0 chr4 22345653 22345706 -133284414 + AT_rich Low_complexity Low_complexity 1 53 0 5 755 714 210 118 11 chr4 22345821 22345999 -133284121 + B3 SINE B2 20 216 0 5 755 823 284 83 24 chr4 22346083 22346419 -133283701 + Lx8 LINE L1 6974 7329 -144 5 755 2398 50 0 67 chr4 22346694 22347035 -133283085 + L1_Mus1 LINE L1 6249 6566 -1 5 755 723 158 90 8 chr4 22347119 22347253 -133282867 + B1_Mur2 SINE Alu 1 145 -4 5 755 355 308 95 83 chr4 22347522 22347792 -133282328 - MLT1F1 LTR MaLR -9 560 275 5 755 446 216 299 0 chr4 22347788 22347922 -133282198 - MLT2B4 LTR ERVL -355 201 28 5 755 273 57 0 0 chr4 22348693 22348728 -133281392 + (T)n Simple_repeat Simple_repeat 1 35 0 5 755 918 303 7 55 chr4 22348785 22349092 -133281028 + B4A SINE B4 1 292 0 5 755 462 36 0 0 chr4 22351211 22351267 -133278853 + (CATA)n Simple_repeat Simple_repeat 2 57 0 5 755 1697 48 0 0 chr4 22351288 22351496 -133278624 - L1Md_T LINE L1 -2 6580 6373 5 755 657 292 113 49 chr4 22352505 22352894 -133277226 - MLT1J LTR MaLR -37 475 62 5 755 445 253 115 5 chr4 22353045 22353236 -133276884 + MER33 DNA MER1_type 35 246 -78 5 755 845 280 63 19 chr4 22353830 22354122 -133275998 - B4A SINE B4 0 292 2 5 755 1089 274 97 67 chr4 22354926 22355980 -133274140 - Lx8 LINE L1 -1548 5925 4836 5 755 503 301 152 34 chr4 22355971 22357033 -133273087 - Lx8 LINE L1 -2403 3740 2430 5 755 438 20 0 0 chr4 22357033 22357084 -133273036 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 755 445 304 203 25 chr4 22357084 22357400 -133272720 - Lx8 LINE L1 -3689 2454 2118 5 755 231 61 0 0 chr4 22357696 22357729 -133272391 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 755 766 295 61 29 chr4 22359143 22359489 -133270631 - Lx7 LINE L1 -263 7433 7077 5 755 234 281 31 0 chr4 22359853 22359917 -133270203 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 5 755 248 253 47 35 chr4 22359962 22360048 -133270072 + Kanga11a DNA Tc2 872 958 -12 5 755 273 339 84 26 chr4 22362748 22362939 -133267181 - MIR SINE MIR -14 248 47 5 755 245 255 153 0 chr4 22363063 22363161 -133266959 - Cheshire DNA MER1_type -179 2241 2129 5 755 257 241 19 0 chr4 22363170 22363224 -133266896 + ID4_ SINE ID 23 77 -6 5 755 438 20 0 0 chr4 22363229 22363280 -133266840 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 755 809 256 94 64 chr4 22363282 22363612 -133266508 - Cheshire DNA MER1_type -292 2128 1789 5 755 1360 298 154 41 chr4 22363689 22365048 -133265072 - Cheshire DNA MER1_type -784 1636 125 5 755 1490 192 70 3 chr4 22365476 22365805 -133264315 - Lx9 LINE L1 -922 6722 6372 5 755 1410 211 209 13 chr4 22365802 22366507 -133263613 + Lx9 LINE L1 6726 7568 -76 5 755 259 203 0 0 chr4 22366535 22366594 -133263526 - Lx4A LINE L1 0 7058 7000 5 755 4794 38 3 2 chr4 22366741 22367318 -133262802 - L1Md_F3 LINE L1 -2 6582 6005 5 755 235 0 0 0 chr4 22367318 22367351 -133262769 + L1Md_F3 LINE L1 5945 5977 -607 5 755 2790 248 62 42 chr4 22368139 22368693 -133261427 + RCHARR1 DNA MER1_type 95 664 -310 5 755 661 169 136 0 chr4 22368693 22368811 -133261309 + B1_Mur3 SINE Alu 2 135 -14 5 755 2790 248 62 42 chr4 22368811 22369108 -133261012 + RCHARR1 DNA MER1_type 665 963 -11 5 755 594 271 85 5 chr4 22369346 22369546 -133260574 + B3 SINE B2 1 216 0 5 755 396 322 0 25 chr4 22370860 22370981 -133259139 + MTEa LTR MaLR 1 118 -261 5 755 719 254 48 32 chr4 22371076 22371263 -133258857 + RLTR18B LTR ERVK 12 201 -311 5 755 1353 122 5 40 chr4 22371385 22371608 -133258512 + RMER2 LTR ERV1 353 567 0 5 755 702 213 202 0 chr4 22372567 22372755 -133257365 - URR1A DNA MER1_type 0 226 1 5 755 788 182 31 87 chr4 22373007 22373295 -133256825 - Lx9 LINE L1 -1 7643 7372 5 755 920 133 28 0 chr4 22374139 22374282 -133255838 + Lx4A LINE L1 6680 6826 -232 5 755 681 305 93 28 chr4 22374288 22374855 -133255265 - L1MA4 LINE L1 -395 5905 5302 5 755 424 270 126 0 chr4 22375071 22375182 -133254938 - B4A SINE B4 -62 230 106 5 755 625 295 99 22 chr4 22375235 22375467 -133254653 - B4A SINE B4 -8 284 35 5 755 255 300 0 32 chr4 22375498 22375560 -133254560 - ID4_ SINE ID 0 83 24 5 755 495 279 20 42 chr4 22375579 22375836 -133254284 - L1MDa LINE L1 -3499 2739 2492 5 755 339 25 0 0 chr4 22375836 22375876 -133254244 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 755 465 19 0 0 chr4 22375876 22375929 -133254191 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 755 318 259 17 40 chr4 22375929 22375955 -133254165 - L1MDa LINE L1 -4139 2494 2470 5 755 6043 48 30 1 chr4 22376015 22376774 -133253346 - L1_Mus1 LINE L1 -6 6561 5781 5 755 1106 55 7 0 chr4 22376774 22376920 -133253200 + L1_Mus1 LINE L1 5627 5773 -794 5 755 3451 73 15 4 chr4 22376917 22377398 -133252722 - L1_Mus3 LINE L1 -31 6607 6122 5 755 2558 37 53 28 chr4 22377530 22377887 -133252233 + RLTR10 LTR ERVK 1 366 -24 5 755 327 219 0 0 chr4 22379584 22379648 -133250472 + Lx5 LINE L1 6292 6355 -695 5 755 207 130 27 55 chr4 22379919 22379992 -133250128 + T-rich Low_complexity Low_complexity 5 75 0 5 755 574 252 30 0 chr4 22380191 22380322 -133249798 - B3 SINE B2 -81 135 1 5 755 334 275 47 53 chr4 22380325 22380396 -133249724 - L1M3 LINE L1 -979 5164 5091 5 755 3634 45 7 4 chr4 22380396 22380846 -133249274 - L1Md_F3 LINE L1 -1 6583 6133 5 755 334 275 47 53 chr4 22380846 22380943 -133249177 - L1M3 LINE L1 -1053 5090 4998 5 755 519 82 0 0 chr4 22381146 22381219 -133248901 + (TTTA)n Simple_repeat Simple_repeat 2 74 0 5 755 391 297 10 0 chr4 22381219 22381320 -133248800 - PB1D10 SINE Alu -11 106 5 5 755 25 31 0 0 chr4 22381459 22381491 -133248629 + AT_rich Low_complexity Low_complexity 1 32 0 5 755 429 285 25 12 chr4 22381494 22381654 -133248466 - L1M3 LINE L1 -1146 4997 4836 5 755 969 271 11 19 chr4 22381677 22382053 -133248067 - L1M3 LINE L1 -1432 4708 4336 5 755 1163 285 59 7 chr4 22382082 22382113 -133248007 + Lx5 LINE L1 6603 6633 -417 5 755 275 0 29 0 chr4 22382113 22382148 -133247972 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 5 755 1163 285 59 7 chr4 22382148 22382540 -133247580 + Lx5 LINE L1 6634 7047 -3 5 755 354 249 93 62 chr4 22382584 22382777 -133247343 - L1M2 LINE L1 -1833 4310 4112 5 755 4031 154 135 16 chr4 22382794 22383670 -133246450 - Lx9 LINE L1 -3 7641 6662 5 755 414 39 0 0 chr4 22383760 22383812 -133246308 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 755 1774 199 57 12 chr4 22383917 22384318 -133245802 + MTD LTR MaLR 1 419 0 5 755 564 296 105 11 chr4 22384320 22384511 -133245609 + B3 SINE B2 1 209 -7 5 755 386 291 180 13 chr4 22384652 22384802 -133245318 + L2a LINE L2 3248 3422 -4 5 755 524 207 170 7 chr4 22385770 22385911 -133244209 + ERVL-B4-int LTR ERVL 4282 4445 -1269 5 755 392 239 84 32 chr4 22386040 22386135 -133243985 + B1_Mur1 SINE Alu 35 134 -15 5 755 501 17 0 0 chr4 22387138 22387196 -133242924 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 755 280 268 0 14 chr4 22387495 22387567 -133242553 + ID4_ SINE ID 3 73 -10 5 755 1180 58 0 0 chr4 22387983 22388137 -133241983 + L1_Mus1 LINE L1 6411 6564 -3 5 755 275 286 117 28 chr4 22388609 22388789 -133241331 - MLT1G3 LTR MaLR -399 196 1 5 755 611 283 14 0 chr4 22388960 22389098 -133241022 + B3 SINE B2 36 175 -41 5 755 369 111 0 0 chr4 22389134 22389188 -133240932 + ORR1D1 LTR MaLR 321 374 0 5 755 180 77 0 0 chr4 22389535 22389561 -133240559 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 5 755 3918 48 0 8 chr4 22389571 22390053 -133240067 - L1Md_F2 LINE L1 -6 6576 6099 5 755 41141 10 2 7 chr4 22390388 22396191 -133233929 + L1Md_A LINE L1 47 5815 -68 5 755 618 0 0 0 chr4 22396191 22396266 -133233854 + L1Md_A LINE L1 6508 6582 0 5 755 608 266 52 126 chr4 22396324 22396355 -133233765 - Lx9 LINE L1 0 7644 7615 5 755 419 52 0 17 chr4 22396355 22396414 -133233706 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 755 608 266 52 126 chr4 22396414 22396825 -133233295 - Lx9 LINE L1 -30 7614 7235 5 755 587 202 0 0 chr4 22396827 22396936 -133233184 - B1_Mur3 SINE Alu -40 109 1 5 755 271 231 66 8 chr4 22397450 22397572 -133232548 - L1MA8 LINE L1 0 6312 6184 5 755 326 262 15 60 chr4 22397608 22397742 -133232378 - RMER12 LTR ERVK -458 864 737 5 755 973 279 108 115 chr4 22397753 22399125 -133230995 - L1MA8 LINE L1 -235 6056 4709 5 755 405 0 0 0 chr4 22399128 22399173 -133230947 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 5 755 1603 188 106 32 chr4 22399193 22399572 -133230548 + Lx5 LINE L1 6616 7022 -28 5 755 1433 246 126 18 chr4 22399597 22399833 -133230287 - L1MA8 LINE L1 -1455 4685 4420 5 755 912 135 0 0 chr4 22399833 22399981 -133230139 + (TTTC)n Simple_repeat Simple_repeat 4 151 0 5 755 1433 246 126 18 chr4 22399981 22400299 -133229821 - L1MA8 LINE L1 -1721 4419 4071 5 755 180 0 0 0 chr4 22400311 22400331 -133229789 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 755 358 234 13 0 chr4 22400642 22400719 -133229401 - PB1 SINE Alu -26 101 24 6 755 345 50 33 16 chr4 22401076 22401137 -133228983 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 755 218 105 0 26 chr4 22401273 22401312 -133228808 + (CCCCCT)n Simple_repeat Simple_repeat 5 42 0 6 755 217 296 0 0 chr4 22404910 22404991 -133225129 + G-rich Low_complexity Low_complexity 1 81 0 6 755 209 135 19 0 chr4 22408898 22408950 -133221170 + T-rich Low_complexity Low_complexity 2 54 0 6 755 261 0 0 0 chr4 22409895 22409924 -133220196 + (T)n Simple_repeat Simple_repeat 1 29 0 6 755 213 119 0 0 chr4 22411088 22411130 -133218990 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 755 21 57 0 0 chr4 22411361 22411396 -133218724 + AT_rich Low_complexity Low_complexity 1 35 0 6 756 561 30 0 0 chr4 22413542 22413609 -133216511 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 756 387 0 0 0 chr4 22413609 22413652 -133216468 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 756 28 0 0 0 chr4 22413819 22413847 -133216273 + AT_rich Low_complexity Low_complexity 1 28 0 6 756 567 96 0 0 chr4 22414824 22414907 -133215213 + (CTG)n Simple_repeat Simple_repeat 3 85 0 6 756 357 129 0 0 chr4 22415008 22415078 -133215042 + (CCG)n Simple_repeat Simple_repeat 1 70 0 6 756 352 99 28 0 chr4 22415349 22415420 -133214700 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 756 207 191 24 0 chr4 22415454 22415496 -133214624 + (CTG)n Simple_repeat Simple_repeat 3 45 0 6 756 269 242 10 39 chr4 22415514 22415617 -133214503 + CT-rich Low_complexity Low_complexity 2 101 0 6 756 561 15 0 0 chr4 22416122 22416188 -133213932 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 756 576 106 0 0 chr4 22417986 22418071 -133212049 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 6 756 276 100 0 0 chr4 22418067 22418107 -133212013 + (TCC)n Simple_repeat Simple_repeat 3 42 0 6 756 345 159 0 0 chr4 22418526 22418589 -133211531 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 756 459 0 0 0 chr4 22419425 22419476 -133210644 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 756 555 16 0 0 chr4 22419907 22419971 -133210149 + (TCC)n Simple_repeat Simple_repeat 2 65 0 6 756 180 0 0 0 chr4 22421954 22421974 -133208146 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 756 201 147 0 0 chr4 22422601 22422635 -133207485 + (A)n Simple_repeat Simple_repeat 1 34 0 6 756 24 0 0 0 chr4 22426520 22426544 -133203576 + AT_rich Low_complexity Low_complexity 1 24 0 6 756 707 211 115 42 chr4 22427946 22428233 -133201887 + L1_Rod LINE L1 5051 5358 -489 6 756 490 280 96 110 chr4 22428233 22428607 -133201513 + MTE2a LTR MaLR 28 405 -14 6 756 581 250 138 18 chr4 22428604 22428828 -133201292 + MTEb LTR MaLR 122 372 -7 6 756 28 29 0 0 chr4 22429048 22429083 -133201037 + AT_rich Low_complexity Low_complexity 1 35 0 6 756 212 130 0 42 chr4 22429492 22429540 -133200580 + T-rich Low_complexity Low_complexity 1 46 0 6 756 1305 83 0 0 chr4 22430274 22430454 -133199666 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 6 756 226 266 0 48 chr4 22430454 22430526 -133199594 + CT-rich Low_complexity Low_complexity 2 70 0 6 756 224 200 82 0 chr4 22430900 22430985 -133199135 + (TTATA)n Simple_repeat Simple_repeat 2 93 0 6 756 1291 224 16 74 chr4 22431076 22431453 -133198667 + ORR1D1 LTR MaLR 1 355 -19 6 756 613 256 63 87 chr4 22432116 22432449 -133197671 + ORR1E LTR MaLR 9 333 -26 6 756 900 275 143 34 chr4 22432570 22432868 -133197252 - L1_Mur3 LINE L1 -7067 645 324 6 756 369 0 0 0 chr4 22432868 22432909 -133197211 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 756 900 275 143 34 chr4 22432909 22433051 -133197069 - L1_Mur3 LINE L1 -7389 323 157 6 756 1664 212 41 27 chr4 22434127 22434285 -133195835 - ORR1D1 LTR MaLR 0 374 211 6 756 2359 141 10 24 chr4 22434285 22434700 -133195420 + RLTR9E LTR ERVK 1 409 0 6 756 1664 212 41 27 chr4 22434700 22434910 -133195210 - ORR1D1 LTR MaLR -164 210 1 6 756 435 324 6 44 chr4 22435502 22435683 -133194437 + L1MEc LINE L1 96 269 -6131 6 756 630 269 15 22 chr4 22435704 22435922 -133194198 + L1MEc LINE L1 1661 1910 -4505 6 756 1110 111 231 3 chr4 22436111 22436342 -133193778 + Lx3A LINE L1 6709 7009 0 6 756 395 250 132 36 chr4 22436344 22436417 -133193703 + L1MEc LINE L1 2082 2162 -4253 6 756 889 119 78 142 chr4 22436417 22436622 -133193498 - B2_Mm2 SINE B2 -3 192 1 6 756 395 255 133 33 chr4 22436622 22436875 -133193245 + L1MEc LINE L1 2163 2439 -3880 6 756 368 75 0 70 chr4 22436874 22436931 -133193189 - L1Md_F2 LINE L1 -202 6380 6328 6 756 1409 53 0 0 chr4 22436908 22437078 -133193042 - L1Md_F2 LINE L1 -686 5896 5727 6 756 1480 47 0 20 chr4 22437079 22437276 -133192844 + L1Md_F2 LINE L1 6388 6580 -2 6 756 250 204 165 9 chr4 22437279 22437388 -133192732 + L1MEc LINE L1 2435 2560 -3759 6 756 536 282 66 82 chr4 22437618 22437669 -133192451 - Lx7 LINE L1 0 7696 7653 6 756 1907 214 52 138 chr4 22437669 22438337 -133191783 + RMER19C LTR ERVK 1 611 0 6 756 536 282 66 82 chr4 22438337 22438561 -133191559 - Lx7 LINE L1 -44 7652 7445 6 756 726 69 0 0 chr4 22438561 22438662 -133191458 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 756 536 282 66 82 chr4 22438662 22438883 -133191237 - Lx7 LINE L1 -252 7444 7207 6 756 401 0 0 20 chr4 22438949 22438999 -133191121 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 6 756 4739 104 48 4 chr4 22439024 22439718 -133190402 - Lx LINE L1 0 6654 5931 6 756 341 345 64 43 chr4 22440204 22440392 -133189728 + ORR1E LTR MaLR 1 192 -167 6 756 983 68 0 0 chr4 22441202 22441334 -133188786 + B1_Mus1 SINE Alu 10 141 -7 6 756 180 0 0 0 chr4 22441337 22441357 -133188763 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 756 556 302 54 49 chr4 22441540 22441719 -133188401 + L1M2 LINE L1 2425 2599 -3544 6 756 183 42 0 0 chr4 22441719 22441743 -133188377 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 756 556 302 54 49 chr4 22441743 22441971 -133188149 + L1M2 LINE L1 2600 2834 -3309 6 756 2118 200 62 39 chr4 22442053 22442590 -133187530 - RLTR17 LTR ERVK -58 634 86 6 756 318 283 65 109 chr4 22442592 22442657 -133187463 + L1M2 LINE L1 2877 2941 -3202 6 756 5215 60 1 5 chr4 22442657 22443315 -133186805 + L1Md_F2 LINE L1 5926 6581 -1 6 756 318 283 65 109 chr4 22443315 22443630 -133186490 + L1M2 LINE L1 2942 3248 -2895 6 756 1147 201 165 30 chr4 22443630 22443958 -133186162 + ORR1D1 LTR MaLR 3 374 0 6 756 776 276 32 29 chr4 22444055 22444395 -133185725 + Lx7 LINE L1 4440 4780 -1100 6 756 35 24 0 0 chr4 22444407 22444449 -133185671 + AT_rich Low_complexity Low_complexity 1 42 0 6 756 546 222 27 20 chr4 22444449 22444596 -133185524 - Lx4A LINE L1 -3 7055 6908 6 756 1265 287 115 37 chr4 22444597 22445076 -133185044 + Lx8 LINE L1 4788 5294 -553 6 756 273 57 0 0 chr4 22445076 22445111 -133185009 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 756 1265 290 111 37 chr4 22445111 22445545 -133184575 + Lx8 LINE L1 5295 5804 -1169 6 756 7067 35 0 0 chr4 22445874 22446708 -133183412 + L1Md_T LINE L1 5749 6582 0 6 756 26 0 0 0 chr4 22447246 22447272 -133182848 + AT_rich Low_complexity Low_complexity 1 26 0 6 756 1722 282 128 5 chr4 22447275 22447885 -133182235 + Lx8 LINE L1 6197 6881 -592 6 756 553 252 26 19 chr4 22447919 22448073 -133182047 + Lx8 LINE L1 6969 7123 -350 6 756 885 178 6 6 chr4 22448185 22448349 -133181771 - Lx4A LINE L1 -258 6800 6637 6 756 1093 231 4 22 chr4 22448510 22448740 -133181380 - MTD LTR MaLR 0 419 194 6 756 31923 80 16 4 chr4 22448740 22454766 -133175354 - L1Md_F2 LINE L1 -1 6581 471 6 756 857 274 36 11 chr4 22454765 22455066 -133175054 - Lx7 LINE L1 -1024 6436 6132 6 756 1227 251 17 25 chr4 22455065 22455421 -133174699 + Lx7 LINE L1 5604 5956 -1740 6 756 40 21 0 0 chr4 22456183 22456230 -133173890 + AT_rich Low_complexity Low_complexity 1 47 0 6 756 3746 256 57 61 chr4 22456237 22457376 -133172744 - MTD-int LTR MaLR -122 1136 2 6 756 1237 201 81 4 chr4 22457380 22457640 -133172480 - MTD LTR MaLR -3 416 137 6 756 2398 289 86 17 chr4 22457644 22458571 -133171549 - Lx8 LINE L1 -450 7023 6033 6 756 258 32 0 0 chr4 22458932 22458963 -133171157 + (GGA)n Simple_repeat Simple_repeat 2 32 0 6 756 23 33 0 0 chr4 22462058 22462088 -133168032 + AT_rich Low_complexity Low_complexity 1 30 0 6 756 47 0 0 0 chr4 22462796 22462843 -133167277 + AT_rich Low_complexity Low_complexity 1 47 0 6 756 34 42 0 0 chr4 22462921 22462969 -133167151 + AT_rich Low_complexity Low_complexity 1 48 0 6 756 282 156 0 0 chr4 22462979 22463043 -133167077 + T-rich Low_complexity Low_complexity 1 64 0 6 756 36277 30 0 0 chr4 22463054 22469488 -133160632 - L1Md_T LINE L1 0 6585 56 6 756 27806 82 19 3 chr4 22469495 22471100 -133159020 - L1_Mus1 LINE L1 0 6567 4877 6 756 3953 63 6 0 chr4 22471100 22471606 -133158514 + L1Md_F3 LINE L1 6062 6570 -14 6 756 27806 126 36 14 chr4 22471606 22476261 -133153859 - L1_Mus1 LINE L1 -1007 4876 177 6 756 294 95 0 0 chr4 22476341 22476383 -133153737 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 756 348 346 17 13 chr4 22476385 22476622 -133153498 - Lx9 LINE L1 -171 7473 7236 6 756 490 238 0 37 chr4 22476665 22476774 -133153346 - RLTR24 LTR ERV1 -73 456 352 6 756 204 246 0 0 chr4 22476839 22476908 -133153212 + CT-rich Low_complexity Low_complexity 3 71 0 6 756 303 323 21 0 chr4 22476909 22477002 -133153118 - B1_Mus2 SINE Alu 0 147 53 6 756 2559 260 94 9 chr4 22477003 22477802 -133152318 - Lx9 LINE L1 -608 7036 6170 6 756 3595 244 62 36 chr4 22477838 22479286 -133150834 - Lx9 LINE L1 -1615 6029 4488 6 756 482 137 0 47 chr4 22479348 22479455 -133150665 - L1_Mus3 LINE L1 -3 6635 6534 6 756 407 114 29 0 chr4 22479510 22479580 -133150540 + Lx7 LINE L1 7625 7696 0 6 756 21 0 0 0 chr4 22479665 22479686 -133150434 + AT_rich Low_complexity Low_complexity 1 21 0 6 756 36 0 0 0 chr4 22479741 22479777 -133150343 + AT_rich Low_complexity Low_complexity 1 36 0 6 756 2741 153 198 13 chr4 22479778 22480125 -133149995 + Lx6 LINE L1 3705 4173 -1707 6 756 3162 136 115 18 chr4 22480125 22480752 -133149368 - RMER6C LTR ERVK 0 690 3 6 756 2741 153 198 13 chr4 22480752 22481105 -133149015 + Lx6 LINE L1 4174 4534 -1346 6 756 453 81 0 0 chr4 22481105 22481167 -133148953 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 6 756 3203 33 3 0 chr4 22481167 22481557 -133148563 - MTA_Mm LTR MaLR -5 391 1 6 756 3033 174 63 69 chr4 22481559 22482404 -133147716 + Lx6 LINE L1 4539 5378 -502 6 756 1597 248 82 72 chr4 22482421 22482947 -133147173 - RLTR20B3 LTR ERVK -26 551 21 6 756 3357 241 95 12 chr4 22482950 22484368 -133145752 + Lx6 LINE L1 5364 6899 -561 6 756 2228 187 38 13 chr4 22484370 22484895 -133145225 + L1_Mur3 LINE L1 2645 3182 -2698 6 756 3538 113 0 6 chr4 22484893 22485442 -133144678 - Lx3B LINE L1 -645 6328 5783 6 756 3739 68 2 4 chr4 22485464 22485953 -133144167 - L1Md_F2 LINE L1 -2 6580 6093 6 756 3578 71 4 0 chr4 22485954 22486449 -133143671 + L1_Mm LINE L1 4396 4892 -991 6 756 3172 102 0 2 chr4 22486450 22486910 -133143210 - Lx3B LINE L1 -92 5794 5336 6 756 1878 196 3 6 chr4 22486905 22487270 -133142850 + RMER1B Other Other 688 1051 -15 6 756 2898 270 63 18 chr4 22487287 22487634 -133142486 + Lx6 LINE L1 6418 6775 -685 6 756 4173 123 69 5 chr4 22487634 22488303 -133141817 - Lx3A LINE L1 -7 6974 6263 6 756 2898 270 63 18 chr4 22488303 22488864 -133141256 + Lx6 LINE L1 6776 7366 -94 6 756 441 0 0 0 chr4 22488986 22489035 -133141085 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 6 756 2823 91 12 5 chr4 22490337 22490737 -133139383 + L1_Mus4 LINE L1 6216 6618 -18 7 756 506 199 7 42 chr4 22492876 22493018 -133137102 + L1Md_T LINE L1 6436 6572 -10 7 756 197 201 97 8 chr4 22493289 22493365 -133136755 + L2a LINE L2 3262 3411 -15 7 756 413 291 78 12 chr4 22494191 22494383 -133135737 + MIR SINE MIR 39 240 -22 7 756 4726 260 88 15 chr4 22494387 22496263 -133133857 + Lx7 LINE L1 5390 7416 -280 7 756 270 231 0 0 chr4 22497154 22497219 -133132901 + (TATG)n Simple_repeat Simple_repeat 1 65 0 7 756 320 121 15 0 chr4 22497528 22497594 -133132526 - Lx LINE L1 -1 6653 6587 7 756 612 40 0 0 chr4 22498074 22498149 -133131971 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 756 1128 63 0 0 chr4 22498149 22498287 -133131833 - B1_Mm SINE Alu -4 143 6 7 756 1013 264 55 12 chr4 22498313 22498658 -133131462 - L1_Mur3 LINE L1 -7091 621 262 7 756 1113 126 56 24 chr4 22498662 22498914 -133131206 + L1_Mur3 LINE L1 3016 3275 -2605 7 756 1246 163 18 43 chr4 22498910 22499192 -133130928 - L1_Mur1 LINE L1 -1051 4835 4561 7 756 4023 131 26 10 chr4 22499182 22500000 -133130120 + Lx2 LINE L1 5456 6287 -710 7 756 3666 143 83 0 chr4 22500006 22500657 -133129463 + Lx2 LINE L1 6293 6997 0 1 756 4565 176 48 12 chr4 22500646 22501864 -133128256 + Lx6 LINE L1 3243 4529 -1351 2 756 10467 151 36 9 chr4 22501863 22502658 -133127462 + Lx5 LINE L1 3821 4630 -1247 3 756 279 0 0 0 chr4 22502658 22502689 -133127431 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 756 10467 156 36 16 chr4 22502689 22504351 -133125769 + Lx5 LINE L1 4631 6343 -707 3 756 2514 184 67 23 chr4 22504360 22504929 -133125191 + Lx5 LINE L1 6455 7048 -2 3 756 500 204 176 15 chr4 22504930 22505129 -133124991 + Lx6 LINE L1 4503 4733 -1147 2 756 220 220 0 0 chr4 22505129 22505179 -133124941 + A-rich Low_complexity Low_complexity 1 50 0 5 756 2559 184 41 2 chr4 22505231 22505845 -133124275 + Lx6 LINE L1 5344 6012 -1684 2 756 1104 105 317 0 chr4 22505927 22506223 -133123897 - RLTR9D LTR ERVK 0 403 14 6 756 4537 245 35 24 chr4 22506230 22507437 -133122683 + Lx6 LINE L1 6072 7291 -169 2 756 210 37 0 0 chr4 22507658 22507685 -133122435 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 7 756 32 26 0 0 chr4 22507807 22507846 -133122274 + AT_rich Low_complexity Low_complexity 1 39 0 8 756 1062 243 208 14 chr4 22507939 22508290 -133121830 + MTD LTR MaLR 1 419 0 9 756 247 262 12 12 chr4 22508796 22508881 -133121239 + CT-rich Low_complexity Low_complexity 2 86 0 1 756 266 291 0 37 chr4 22509425 22509507 -133120613 - MER3 DNA MER1_type -95 114 36 1 756 194 207 17 0 chr4 22509686 22509744 -133120376 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 756 222 239 14 95 chr4 22510117 22510191 -133119929 + PB1D10 SINE Alu 49 116 -1 1 756 270 81 0 0 chr4 22511314 22511351 -133118769 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 1 756 181 279 97 16 chr4 22511547 22511609 -133118511 + L2b LINE L2 3143 3209 -166 1 756 857 287 10 0 chr4 22512220 22512415 -133117705 - 7SLRNA srpRNA srpRNA -117 197 1 1 756 249 312 33 67 chr4 22514669 22514789 -133115331 - L2c LINE L2 0 3387 3272 1 756 4378 60 18 0 chr4 22514903 22515507 -133114613 + L1_Mm LINE L1 3830 4444 -1439 1 756 32125 75 2 14 chr4 22515507 22521000 -133109120 + L1Md_F3 LINE L1 159 5585 -298 1 756 7917 52 7 9 chr4 22521001 22522001 -133108119 + L1Md_F3 LINE L1 5587 6584 0 1 756 1327 80 11 0 chr4 22522005 22522193 -133107927 + L1Md_F3 LINE L1 6381 6570 -14 2 756 1400 126 28 5 chr4 22522210 22522425 -133107695 + RLTR9E LTR ERVK 1 220 -189 2 756 281 206 0 31 chr4 22522413 22522478 -133107642 + RLTR9E LTR ERVK 347 409 0 2 756 35 41 0 0 chr4 22522538 22522587 -133107533 + AT_rich Low_complexity Low_complexity 1 49 0 2 756 361 324 98 19 chr4 22522759 22523023 -133107097 + Lx9 LINE L1 7228 7512 -132 2 756 192 152 0 0 chr4 22523072 22523105 -133107015 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 2 756 888 95 0 0 chr4 22523163 22523289 -133106831 + B1_Mus2 SINE Alu 22 147 0 2 756 200 0 0 127 chr4 22523291 22523354 -133106766 + (CAAAAA)n Simple_repeat Simple_repeat 1 55 0 2 756 34893 28 1 7 chr4 22523358 22528368 -133101752 + L1Md_T LINE L1 614 5585 -298 2 756 8338 39 0 0 chr4 22528369 22529365 -133100755 + L1Md_T LINE L1 5587 6582 0 2 756 691 156 0 11 chr4 22529402 22529583 -133100537 + A-rich Low_complexity Low_complexity 1 179 0 2 756 22 35 0 0 chr4 22530530 22530559 -133099561 + AT_rich Low_complexity Low_complexity 1 29 0 2 756 518 335 84 58 chr4 22531269 22531732 -133098388 + Lx8 LINE L1 6997 7471 -2 3 756 385 71 0 28 chr4 22532731 22532803 -133097317 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 3 756 334 211 9 9 chr4 22532830 22532935 -133097185 + GA-rich Low_complexity Low_complexity 2 106 0 3 756 303 356 60 20 chr4 22532941 22533090 -133097030 + HAL1-3A_ME LINE L1 2284 2438 -420 3 756 321 189 8 54 chr4 22533096 22533225 -133096895 + G-rich Low_complexity Low_complexity 4 126 0 3 756 342 0 0 0 chr4 22534437 22534475 -133095645 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 756 322 254 0 0 chr4 22534501 22534564 -133095556 - B4A SINE B4 -225 67 5 3 756 412 262 18 18 chr4 22534567 22534676 -133095444 - ID_B1 SINE B4 -13 211 103 3 756 842 219 96 16 chr4 22535332 22535582 -133094538 - Lx9 LINE L1 -209 7435 7166 3 756 1183 118 149 0 chr4 22535709 22535904 -133094216 + URR1B DNA MER1_type 1 224 -1 3 756 1753 196 71 35 chr4 22536930 22537336 -133092784 + MTC LTR MaLR 1 421 0 4 756 274 274 138 17 chr4 22537646 22537786 -133092334 + MLT1A0 LTR MaLR 208 389 -1 4 756 309 419 47 0 chr4 22537787 22537959 -133092161 - LTR16C LTR ERVL -154 335 156 4 756 2011 114 70 3 chr4 22539126 22539425 -133090695 - ORR1A2 LTR MaLR -8 319 1 4 756 834 251 80 12 chr4 22539493 22539743 -133090377 + Lx7 LINE L1 7014 7280 -416 4 756 1574 199 63 31 chr4 22539764 22540156 -133089964 - ORR1B2 LTR MaLR -14 364 1 4 756 406 250 13 126 chr4 22540157 22540308 -133089812 - MTD LTR MaLR -283 136 3 4 756 2911 90 0 49 chr4 22540659 22541089 -133089031 - L1_Mus2 LINE L1 0 6566 6158 4 94 19242 118 39 19 chr4 22541089 22544824 -133085296 - L1Md_F LINE L1 -1405 4478 671 4 757 1428 261 24 83 chr4 22545050 22545405 -133084715 - MTD LTR MaLR -8 411 82 4 757 3270 47 0 22 chr4 22545405 22545822 -133084298 - L1Md_F2 LINE L1 0 6582 6175 5 757 1428 261 24 83 chr4 22545822 22545888 -133084232 - MTD LTR MaLR -338 81 15 4 757 529 161 3 84 chr4 22545949 22546238 -133083882 + (CCA)n Simple_repeat Simple_repeat 1 265 0 5 757 1132 68 6 12 chr4 22546536 22546700 -133083420 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 5 757 2084 217 121 41 chr4 22547101 22548028 -133082092 - L1Md_F LINE L1 -5433 1108 148 5 757 2979 137 58 22 chr4 22548029 22548075 -133082045 - L1VL2 LINE L1 -5640 695 650 5 757 549 0 0 0 chr4 22548075 22548136 -133081984 + (CTATG)n Simple_repeat Simple_repeat 4 64 0 5 757 2979 137 58 22 chr4 22548136 22548642 -133081478 - L1VL2 LINE L1 -5686 649 125 5 757 186 43 0 0 chr4 22548843 22548866 -133081254 + (TCC)n Simple_repeat Simple_repeat 1 23 0 5 757 1314 204 0 16 chr4 22548866 22549115 -133081005 - Lx5 LINE L1 -57 6993 6749 5 757 207 100 0 0 chr4 22549133 22549163 -133080957 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 757 5237 112 14 8 chr4 22549169 22549960 -133080160 - Lx2 LINE L1 -7 6990 6195 5 757 192 77 0 0 chr4 22550159 22550185 -133079935 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 6 757 210 128 0 0 chr4 22550194 22550233 -133079887 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 757 769 228 91 25 chr4 22550389 22550587 -133079533 + B3 SINE B2 2 212 -4 6 757 4402 30 0 0 chr4 22552232 22552740 -133077380 - L1Md_T LINE L1 -2 6580 6073 6 757 1618 77 5 0 chr4 22552945 22553165 -133076955 + L1_Mus2 LINE L1 6346 6566 0 6 757 992 46 8 8 chr4 22553603 22553735 -133076385 - B1_Mus2 SINE Alu 0 147 16 6 757 29580 35 6 7 chr4 22553774 22560001 -133070119 - L1Md_T LINE L1 0 6582 361 6 757 228 297 114 41 chr4 22560084 22560207 -133069913 + MLT1A1 LTR MaLR 90 221 -187 6 757 233 57 0 28 chr4 22560850 22560886 -133069234 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 6 757 266 333 83 83 chr4 22561917 22562146 -133067974 - MIRb SINE MIR -15 253 25 6 757 477 0 0 0 chr4 22562150 22562203 -133067917 + (TATG)n Simple_repeat Simple_repeat 2 54 0 7 757 2308 178 28 8 chr4 22562284 22562741 -133067379 - Lx5 LINE L1 -245 6805 6369 7 757 22 70 0 0 chr4 22562830 22562873 -133067247 + AT_rich Low_complexity Low_complexity 1 43 0 7 757 2174 254 37 91 chr4 22562881 22563032 -133067088 - Lx7 LINE L1 0 7696 7551 7 757 261 83 0 0 chr4 22563032 22563068 -133067052 + (AATAG)n Simple_repeat Simple_repeat 2 37 0 7 757 2174 254 37 91 chr4 22563068 22563846 -133066274 - Lx7 LINE L1 -146 7550 6818 7 757 1715 118 70 63 chr4 22563850 22564166 -133065954 - ORR1A3 LTR MaLR -8 318 1 7 757 3220 224 85 5 chr4 22564166 22565000 -133065120 - Lx7 LINE L1 -874 6822 5922 7 757 2242 83 7 3 chr4 22565012 22565315 -133064805 - L1_Mus3 LINE L1 -4 6634 6331 7 757 2533 81 38 0 chr4 22565315 22565687 -133064433 + L1_Mus3 LINE L1 5702 6087 -551 7 757 1904 264 24 33 chr4 22565686 22566344 -133063776 - RMER1C Other Other -325 1017 43 7 757 237 246 0 0 chr4 22566394 22566451 -133063669 - Lx7 LINE L1 -85 5795 5739 7 757 1541 176 16 7 chr4 22566448 22566757 -133063363 - L1_Mur3 LINE L1 -1639 4241 3930 7 757 7825 85 12 13 chr4 22566768 22568013 -133062107 - Lx3_Mus LINE L1 -1056 5953 4717 8 757 7009 99 30 18 chr4 22568013 22569065 -133061055 + Lx3_Mus LINE L1 5945 7009 0 8 757 438 20 0 0 chr4 22569111 22569162 -133060958 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 757 292 143 0 14 chr4 22569217 22569288 -133060832 + Lx3A LINE L1 6871 6940 -41 8 757 259 263 18 0 chr4 22569349 22569406 -133060714 + B4A SINE B4 104 161 -131 8 757 574 179 45 34 chr4 22569409 22569588 -133060532 + Lx9 LINE L1 7378 7558 -86 8 757 485 395 63 18 chr4 22569610 22569943 -133060177 + MLT1J2 LTR MaLR 81 428 -20 8 757 248 254 162 44 chr4 22571466 22571602 -133058518 + AmnSINE1 SINE SINE 415 566 -9 8 757 201 39 0 0 chr4 22571916 22571942 -133058178 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 757 275 239 0 0 chr4 22572211 22572278 -133057842 - L1M2 LINE L1 -810 5490 5424 8 757 468 0 0 0 chr4 22572598 22572650 -133057470 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 757 796 123 44 112 chr4 22573294 22573376 -133056744 - RMER6C LTR ERVK 0 690 595 9 757 386 63 0 0 chr4 22573376 22573439 -133056681 - L1Md_T LINE L1 0 6582 6520 9 757 918 125 134 16 chr4 22573439 22573661 -133056459 - RMER6C LTR ERVK -59 631 493 9 757 512 77 0 13 chr4 22573661 22573740 -133056380 + (TG)n Simple_repeat Simple_repeat 1 78 0 9 757 610 151 341 43 chr4 22573740 22573807 -133056313 - RMER6C LTR ERVK -623 67 2 9 757 231 281 58 0 chr4 22574162 22574283 -133055837 + (TCTCTG)n Simple_repeat Simple_repeat 2 129 0 9 757 261 0 0 0 chr4 22574887 22574916 -133055204 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 757 3652 127 81 60 chr4 22575033 22575771 -133054349 + RMER6A LTR ERVK 3 756 0 9 757 233 181 0 40 chr4 22575870 22575885 -133054235 + A-rich Low_complexity Low_complexity 1 14 0 9 757 1128 82 0 14 chr4 22575885 22576033 -133054087 + B1_Mm SINE Alu 1 146 -1 9 757 233 181 0 40 chr4 22576033 22576092 -133054028 + A-rich Low_complexity Low_complexity 15 72 0 9 757 3936 171 51 20 chr4 22576168 22576966 -133053154 + Lx2B LINE L1 6174 6996 -4 9 757 3083 303 87 26 chr4 22576968 22578822 -133051298 + L1MA4 LINE L1 3036 5013 -1130 1 757 441 0 0 0 chr4 22578822 22578871 -133051249 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 757 3083 304 87 27 chr4 22578871 22579215 -133050905 + L1MA4 LINE L1 4983 5353 -790 1 757 354 335 69 40 chr4 22579215 22579389 -133050731 + B3A SINE B2 4 182 -16 1 757 2894 291 83 63 chr4 22579389 22579665 -133050455 + L1MA4 LINE L1 5323 5591 -709 1 757 222 37 0 0 chr4 22579665 22579692 -133050428 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 757 748 289 83 66 chr4 22579692 22580015 -133050105 + L1MA4 LINE L1 5592 5928 -372 1 757 356 306 32 0 chr4 22580534 22580658 -133049462 + MIRb SINE MIR 85 212 -56 1 757 434 272 111 44 chr4 22581543 22581724 -133048396 + B3A SINE B2 1 193 -5 1 757 507 128 0 0 chr4 22581766 22581852 -133048268 + (GA)n Simple_repeat Simple_repeat 1 86 0 1 757 1162 65 0 0 chr4 22582170 22582324 -133047796 - L1_Mus1 LINE L1 -195 6372 6219 1 757 1327 69 0 0 chr4 22582324 22582498 -133047622 + L1_Mus1 LINE L1 6392 6565 -2 1 757 802 60 8 8 chr4 22582503 22582621 -133047499 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 1 757 245 222 16 16 chr4 22583899 22583963 -133046157 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 1 757 295 269 54 6 chr4 22583956 22584124 -133045996 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1 757 676 279 66 33 chr4 22584683 22584924 -133045196 - RLTR16 LTR ERVK -256 249 1 1 757 228 239 29 154 chr4 22585108 22585125 -133044995 - ID_B1 SINE B4 -4 220 210 1 757 2593 169 105 58 chr4 22585125 22585708 -133044412 - RMER19C LTR ERVK 0 611 2 1 757 228 239 29 154 chr4 22585708 22585794 -133044326 - ID_B1 SINE B4 -15 209 130 1 757 184 242 10 10 chr4 22585814 22585910 -133044210 + CT-rich Low_complexity Low_complexity 1 96 0 1 757 24 32 0 0 chr4 22586447 22586478 -133043642 + AT_rich Low_complexity Low_complexity 1 31 0 1 757 1646 107 12 12 chr4 22586636 22586891 -133043229 - L1_Mus3 LINE L1 0 6638 6384 1 757 378 209 0 0 chr4 22587311 22587389 -133042731 + CT-rich Low_complexity Low_complexity 15 92 0 1 757 1095 82 0 7 chr4 22587389 22587537 -133042583 - B1_Mus2 SINE Alu 0 147 1 1 757 378 209 0 0 chr4 22587537 22587549 -133042571 + polypyrimidine Low_complexity Low_complexity 3 14 0 1 757 583 201 6 143 chr4 22587550 22587718 -133042402 - B1_Mur2 SINE Alu 0 149 5 1 757 1138 82 7 0 chr4 22587812 22587958 -133042162 + B1_Mm SINE Alu 1 147 0 1 757 207 69 0 0 chr4 22587958 22587987 -133042133 + (A)n Simple_repeat Simple_repeat 1 29 0 1 757 1450 240 99 18 chr4 22588320 22588702 -133041418 + MTD LTR MaLR 1 413 -6 1 757 331 305 48 0 chr4 22589556 22589661 -133040459 + PB1D10 SINE Alu 1 110 -7 1 757 4285 89 51 7 chr4 22590104 22590698 -133039422 + Lx3_Mus LINE L1 6367 6988 -21 1 757 192 40 0 0 chr4 22590698 22590723 -133039397 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 757 4285 89 51 7 chr4 22590723 22590740 -133039380 + Lx3_Mus LINE L1 6989 7005 -4 1 757 458 0 0 0 chr4 22591065 22591117 -133039003 - MTB LTR MaLR 0 400 349 1 757 180 0 0 0 chr4 22591540 22591560 -133038560 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 757 221 243 0 41 chr4 22591955 22592028 -133038092 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1 757 3192 43 5 10 chr4 22592313 22592711 -133037409 - MTA_Mm LTR MaLR 0 396 1 1 757 237 305 0 35 chr4 22592840 22592925 -133037195 - RMER1C Other Other -10 1332 1251 1 757 805 254 140 24 chr4 22592874 22593287 -133036833 - Lx8 LINE L1 -30 7443 6983 1 757 400 18 0 34 chr4 22593590 22593649 -133036471 + (CAA)n Simple_repeat Simple_repeat 1 57 0 1 757 495 0 0 0 chr4 22594746 22594801 -133035319 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 757 340 55 0 35 chr4 22595390 22595447 -133034673 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1 757 1742 169 22 100 chr4 22596141 22596442 -133033678 - ORR1C1 LTR MaLR -1 377 77 1 757 1210 40 0 0 chr4 22596442 22596592 -133033528 + L1_Mus1 LINE L1 6418 6567 0 1 757 1742 169 22 100 chr4 22596592 22596690 -133033430 - ORR1C1 LTR MaLR -302 76 9 1 757 1875 156 3 3 chr4 22597962 22598291 -133031829 + Lx4B LINE L1 6229 6557 -501 1 757 450 0 0 0 chr4 22598329 22598379 -133031741 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 757 2819 141 105 31 chr4 22598395 22598967 -133031153 - Lx4A LINE L1 -528 6530 5917 1 757 798 247 129 0 chr4 22598968 22599162 -133030958 + MTD LTR MaLR 109 327 -92 1 757 634 303 36 9 chr4 22599260 22599659 -133030461 - L1M2 LINE L1 -481 5819 5409 1 757 1594 164 10 17 chr4 22599906 22600203 -133029917 + RLTR31_Mm LTR ERVK 2 296 -265 1 757 267 231 174 9 chr4 22600227 22600336 -133029784 - L1_Mur3 LINE L1 -696 5184 5058 1 757 1088 226 91 42 chr4 22600336 22600697 -133029423 + Lx6 LINE L1 6598 6976 -484 1 757 1145 183 126 7 chr4 22600803 22601106 -133029014 + L1_Mur3 LINE L1 3464 3826 -2021 1 757 15083 112 59 17 chr4 22601155 22605524 -133024596 - Lx3A LINE L1 -7 6974 2202 1 757 376 222 0 11 chr4 22605520 22605611 -133024509 - L1_Mur1 LINE L1 -6697 285 196 1 757 955 270 62 7 chr4 22605598 22605907 -133024213 + Lx6 LINE L1 7135 7460 0 1 757 358 203 48 56 chr4 22606196 22606321 -133023799 - L1MEc LINE L1 -5510 890 767 1 757 4382 20 0 0 chr4 22606357 22606850 -133023270 - MT2_Mm LTR ERVL 0 493 1 1 757 30192 96 7 21 chr4 22606914 22613142 -133016978 + L1_Mus1 LINE L1 433 6567 0 1 757 252 297 92 15 chr4 22613224 22613354 -133016766 - L1MEc LINE L1 -5812 588 449 1 757 263 393 56 5 chr4 22614235 22614432 -133015688 - L2c LINE L2 -164 3223 3017 1 757 821 228 69 10 chr4 22616476 22616680 -133013440 + B3 SINE B2 1 216 0 1 757 4178 233 36 18 chr4 22616850 22617890 -133012230 + L1_Mur3 LINE L1 58 1115 -6613 1 757 33304 47 5 4 chr4 22617891 22623108 -133007012 + L1Md_T LINE L1 271 5589 -297 1 757 8143 50 0 0 chr4 22623108 22624104 -133006016 + L1Md_T LINE L1 5590 6585 0 1 757 734 164 129 14 chr4 22624113 22624194 -133005926 + L1_Mur3 LINE L1 1103 1187 -6541 1 757 483 18 0 0 chr4 22624194 22624250 -133005870 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 757 2671 195 72 32 chr4 22624250 22625075 -133005045 + L1_Mur3 LINE L1 1188 2043 -3837 1 757 501 58 0 0 chr4 22625087 22625156 -133004964 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 757 3450 190 44 40 chr4 22625160 22625775 -133004345 + L1_Mur3 LINE L1 4639 5267 -613 1 757 1215 48 0 0 chr4 22625775 22625921 -133004199 + B1_Mm SINE Alu 1 146 -1 1 757 3450 190 44 40 chr4 22625921 22626193 -133003927 + L1_Mur3 LINE L1 5268 5529 -351 1 757 1739 190 83 44 chr4 22626207 22626570 -133003550 - MTB_Mm LTR MaLR -30 377 1 1 757 859 202 0 6 chr4 22626570 22626744 -133003376 + L1_Mur3 LINE L1 5527 5699 -181 1 757 466 221 10 0 chr4 22626744 22626848 -133003272 + RLTR10D LTR ERVK 1 105 -254 1 757 404 278 65 49 chr4 22626882 22627067 -133003053 + RLTR10D LTR ERVK 172 359 0 1 757 451 237 17 0 chr4 22627114 22627232 -133002888 + IAP-d-int LTR ERVK 22 141 -6401 1 757 198 0 0 0 chr4 22627282 22627304 -133002816 + (A)n Simple_repeat Simple_repeat 1 22 0 1 757 5608 277 63 72 chr4 22627304 22628720 -133001400 + IAP-d-int LTR ERVK 3175 4631 -1911 1 757 211 311 118 36 chr4 22628720 22628830 -133001290 + B4 SINE B4 5 123 -169 1 757 5608 277 63 72 chr4 22628830 22630240 -132999880 + IAP-d-int LTR ERVK 4632 6083 -459 1 757 1367 164 21 32 chr4 22630307 22630590 -132999530 + IAP-d-int LTR ERVK 6263 6542 0 1 757 492 273 145 43 chr4 22630590 22630916 -132999204 + RLTR10D LTR ERVK 1 359 0 1 757 458 212 0 22 chr4 22630916 22631036 -132999084 + L1_Mur3 LINE L1 5695 5837 -337 1 757 1949 168 3 9 chr4 22631444 22631762 -132998358 + ORR1A3 LTR MaLR 3 318 -8 1 757 1411 251 68 14 chr4 22631927 22632279 -132997841 + RMER1B Other Other 43 413 -653 1 757 237 295 0 0 chr4 22632265 22632326 -132997794 + RMER1A Other Other 15 75 -955 1 757 7537 50 2 0 chr4 22632484 22633403 -132996717 + L1Md_F2 LINE L1 5650 6570 -12 1 757 2023 269 64 76 chr4 22633796 22634661 -132995459 + L1_Rod LINE L1 900 1704 -4143 1 757 567 0 0 0 chr4 22634661 22634724 -132995396 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 757 2023 265 83 98 chr4 22634724 22635477 -132994643 + L1_Rod LINE L1 1705 2479 -3368 1 757 360 111 0 0 chr4 22635477 22635531 -132994589 + (CAGA)n Simple_repeat Simple_repeat 1 54 0 1 757 2023 265 83 98 chr4 22635531 22635784 -132994336 + L1_Rod LINE L1 2480 2751 -3096 1 757 3910 118 36 8 chr4 22636311 22636918 -132993202 + Lx4A LINE L1 6435 7058 0 1 757 23 0 0 0 chr4 22637329 22637352 -132992768 + AT_rich Low_complexity Low_complexity 1 23 0 1 757 200 131 0 21 chr4 22637406 22637453 -132992667 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1 757 1758 294 117 86 chr4 22637696 22638249 -132991871 - Lx6 LINE L1 -26 7434 6813 1 757 1135 55 7 7 chr4 22638249 22638396 -132991724 + B1_Mm SINE Alu 1 147 0 1 757 9652 197 77 68 chr4 22638396 22639442 -132990678 - Lx6 LINE L1 -648 6812 5693 1 757 454 255 63 9 chr4 22639442 22639553 -132990567 - RMER19B LTR ERVK -477 425 309 1 757 9652 197 77 68 chr4 22639553 22641612 -132988508 - Lx6 LINE L1 -648 5692 3486 1 757 432 0 0 0 chr4 22641612 22641660 -132988460 + (CTG)n Simple_repeat Simple_repeat 2 49 0 1 757 9652 184 59 75 chr4 22641660 22641719 -132988401 - Lx6 LINE L1 -2395 3485 3362 1 757 1329 73 0 0 chr4 22641719 22641897 -132988223 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1 757 9652 184 59 75 chr4 22641897 22642169 -132987951 - Lx6 LINE L1 -2519 3361 3058 1 757 279 203 0 0 chr4 22642169 22642228 -132987892 + CT-rich Low_complexity Low_complexity 6 64 0 1 757 499 214 54 16 chr4 22642230 22642427 -132987693 - Lx6 LINE L1 -2792 3085 2887 1 757 537 16 0 0 chr4 22642427 22642489 -132987631 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1 757 1206 43 0 0 chr4 22642491 22642631 -132987489 - B1_Mm SINE Alu -6 141 2 1 757 234 246 0 0 chr4 22642632 22642689 -132987431 - Lx6 LINE L1 -3540 2340 2284 1 757 1592 200 41 11 chr4 22642674 22643313 -132986807 - Lx6 LINE L1 -4264 1613 957 1 757 1840 139 34 55 chr4 22643314 22643641 -132986479 + ORR1A3 LTR MaLR 1 320 -6 1 757 1322 290 55 40 chr4 22643951 22644631 -132985489 + L1_Rod LINE L1 2792 3462 -2385 1 757 263 93 23 0 chr4 22644631 22644674 -132985446 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 757 1322 290 55 40 chr4 22644674 22644795 -132985325 + L1_Rod LINE L1 3463 3604 -2243 1 757 228 35 0 0 chr4 22644899 22644928 -132985192 + (CAA)n Simple_repeat Simple_repeat 3 31 0 1 757 216 0 0 0 chr4 22644939 22644963 -132985157 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 757 1098 236 217 58 chr4 22645013 22645159 -132984961 + RLTR31_Mur LTR ERVK 11 213 -232 1 757 1095 94 0 0 chr4 22645159 22645339 -132984781 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 757 1098 258 104 87 chr4 22645339 22645755 -132984365 + RLTR31_Mur LTR ERVK 122 548 -5 1 757 946 256 57 40 chr4 22645767 22646137 -132983983 + L1_Rod LINE L1 3706 4081 -1766 1 757 1613 256 69 66 chr4 22646141 22646776 -132983344 - RMER1B Other Other -1 1065 379 1 757 351 0 0 0 chr4 22646776 22646815 -132983305 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 757 1209 311 103 82 chr4 22646815 22647173 -132982947 - RMER1A Other Other -652 378 15 1 757 1079 227 128 10 chr4 22647159 22647457 -132982663 - RMER1B Other Other -653 413 81 1 757 289 320 24 11 chr4 22647977 22648102 -132982018 + MIRc SINE MIR 50 176 -32 1 757 2187 119 9 12 chr4 22648970 22649294 -132980826 - ORR1A2 LTR MaLR 0 327 5 1 757 3451 40 56 36 chr4 22650302 22650768 -132979352 - IAPLTR2_Mm LTR ERVK 0 475 1 1 757 22 35 0 0 chr4 22651770 22651799 -132978321 + AT_rich Low_complexity Low_complexity 1 29 0 1 757 680 25 0 0 chr4 22651936 22652021 -132978099 + L1_Mus1 LINE L1 6309 6387 -180 1 757 30229 78 5 5 chr4 22652023 22653404 -132976716 + L1Md_F2 LINE L1 888 2352 -3534 1 757 279 0 0 0 chr4 22653404 22653435 -132976685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 757 30229 77 5 5 chr4 22653435 22656658 -132973462 + L1Md_F2 LINE L1 2353 5587 -299 1 757 7394 84 2 2 chr4 22656659 22657647 -132972473 + L1Md_F2 LINE L1 5590 6577 -8 1 757 340 246 36 58 chr4 22657922 22658093 -132972027 - L1M2 LINE L1 -1454 4689 4501 1 757 1055 253 183 15 chr4 22658277 22658862 -132971258 - Lx9 LINE L1 -1718 5926 5237 2 757 3115 189 39 0 chr4 22658876 22659500 -132970620 - Lx3C LINE L1 -2 6974 6327 2 757 1556 226 197 61 chr4 22659509 22661133 -132968987 - L1_Mur2 LINE L1 -42 5841 4098 2 757 1498 201 60 3 chr4 22661145 22661445 -132968675 + RMER6D LTR ERVK 1 317 -403 2 757 921 171 5 54 chr4 22661452 22661638 -132968482 - RMER19B LTR ERVK -2 900 724 2 757 1354 271 50 71 chr4 22661706 22662721 -132967399 - Lx9 LINE L1 -2136 3711 2718 2 757 781 244 74 10 chr4 22662733 22662936 -132967184 - MTD LTR MaLR -8 411 196 2 757 7096 213 51 10 chr4 22663040 22665273 -132964847 + Lx6 LINE L1 5126 7457 -3 2 757 591 222 137 14 chr4 22665365 22665511 -132964609 - MTD LTR MaLR -210 209 46 2 757 737 88 78 9 chr4 22665502 22665617 -132964503 + B1_Mus1 SINE Alu 26 148 0 2 757 1263 204 72 74 chr4 22665671 22665992 -132964128 - Lx9 LINE L1 -3770 2077 1734 2 757 345 62 0 0 chr4 22665992 22666040 -132964080 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 757 1263 204 72 74 chr4 22666040 22666232 -132963888 - Lx9 LINE L1 -4114 1733 1565 2 757 3173 23 2 81 chr4 22666232 22666653 -132963467 + RLTR10 LTR ERVK 1 388 -2 2 757 14325 33 43 30 chr4 22666666 22668586 -132961534 + RLTR10-int LTR ERVK 41 1984 -3 2 757 3088 23 2 116 chr4 22668588 22669026 -132961094 + RLTR10 LTR ERVK 1 388 -2 2 757 1987 50 4 0 chr4 22669039 22669299 -132960821 + RLTR10-int LTR ERVK 41 301 -1686 2 757 892 284 31 11 chr4 22669299 22669825 -132960295 - Lx9 LINE L1 -4277 1570 1032 2 757 5923 217 93 12 chr4 22669843 22671296 -132958824 - Lx5 LINE L1 -5 7045 5400 2 757 438 146 39 10 chr4 22671296 22671400 -132958720 + Lx2B LINE L1 6894 7000 0 2 757 3181 188 256 18 chr4 22671400 22672082 -132958038 - Lx5 LINE L1 -481 5399 4623 2 757 202 73 24 24 chr4 22672088 22672130 -132957990 + (TTTTTG)n Simple_repeat Simple_repeat 4 45 0 2 757 234 91 0 0 chr4 22672325 22672358 -132957762 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 757 190 234 0 60 chr4 22673289 22673339 -132956781 - L2a LINE L2 -268 3158 3112 2 757 1491 155 47 15 chr4 22674195 22674481 -132955639 + ORR1C1 LTR MaLR 1 286 -88 2 758 214 294 0 0 chr4 22676052 22676120 -132954000 + CT-rich Low_complexity Low_complexity 1 68 0 2 758 303 28 0 0 chr4 22676276 22676312 -132953808 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 758 24 67 0 0 chr4 22676369 22676414 -132953706 + AT_rich Low_complexity Low_complexity 1 45 0 2 758 22 35 0 0 chr4 22677488 22677517 -132952603 + AT_rich Low_complexity Low_complexity 1 29 0 2 758 2614 204 28 10 chr4 22678651 22679534 -132950586 + Lx5 LINE L1 918 1817 -4060 2 758 5492 215 128 15 chr4 22679548 22681587 -132948533 + Lx5 LINE L1 4587 7047 -3 2 758 260 208 0 0 chr4 22681607 22681660 -132948460 - Lx7 LINE L1 -398 7298 7246 2 758 3545 130 110 8 chr4 22681661 22682811 -132947309 + L1_Mur1 LINE L1 7 1571 -4315 2 758 7660 62 21 19 chr4 22682809 22683950 -132946170 + MusHAL1 LINE L1 1566 2708 -4 2 758 28188 104 18 1 chr4 22684424 22688744 -132941376 - L1_Mus1 LINE L1 0 6567 2161 2 758 968 150 0 0 chr4 22688744 22688891 -132941229 - B1_Mus2 SINE Alu 0 147 1 2 758 28188 139 13 86 chr4 22688891 22690480 -132939640 - L1_Mus1 LINE L1 -3723 2160 725 2 758 291 318 16 8 chr4 22690489 22690616 -132939504 - L1_Mus1 LINE L1 -5814 802 675 2 758 420 262 16 54 chr4 22690674 22690908 -132939212 - L1VL1 LINE L1 -6030 392 45 2 758 927 179 0 0 chr4 22691016 22691195 -132938925 + CT-rich Low_complexity Low_complexity 2 180 0 2 758 234 178 0 64 chr4 22691218 22691296 -132938824 + T-rich Low_complexity Low_complexity 3 75 0 2 758 1025 109 0 7 chr4 22691296 22691444 -132938676 - B1_Mm SINE Alu 0 147 1 2 758 369 321 0 0 chr4 22691779 22691919 -132938201 + L1M4 LINE L1 5476 5615 -559 2 758 36958 31 2 1 chr4 22691923 22697356 -132932764 - L1Md_T LINE L1 0 6582 1142 2 758 5241 81 4 3 chr4 22697334 22698099 -132932021 - L1Md_T LINE L1 -5519 1205 440 2 758 276 158 0 0 chr4 22698204 22698261 -132931859 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 758 279 294 39 19 chr4 22699314 22699407 -132930713 + ID_B1 SINE B4 116 211 -13 2 758 282 29 0 0 chr4 22699407 22699442 -132930678 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 758 391 267 191 36 chr4 22701144 22701338 -132928782 - Lx9 LINE L1 -1020 6624 6401 2 758 213 240 20 0 chr4 22701366 22701416 -132928704 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2 758 1378 270 39 29 chr4 22701565 22702221 -132927899 - Lx9 LINE L1 -1618 6026 5327 2 758 393 268 33 33 chr4 22702242 22702373 -132927747 - B1_Mur1 SINE Alu 0 149 6 2 758 915 156 0 0 chr4 22702400 22702560 -132927560 + CT-rich Low_complexity Low_complexity 1 160 0 2 758 182 159 45 0 chr4 22702570 22702614 -132927506 + T-rich Low_complexity Low_complexity 3 48 0 2 758 220 53 53 0 chr4 22702606 22702644 -132927476 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 758 743 301 5 20 chr4 22702661 22702858 -132927262 + B3 SINE B2 16 209 -7 2 758 22 35 0 0 chr4 22702859 22702888 -132927232 + AT_rich Low_complexity Low_complexity 1 29 0 2 758 808 257 141 25 chr4 22702895 22703334 -132926786 - Lx9 LINE L1 -543 5304 4815 2 758 965 336 97 53 chr4 22703334 22704221 -132925899 + Lx9 LINE L1 6634 7559 -85 2 758 232 261 56 22 chr4 22704530 22704620 -132925500 - Charlie5 DNA MER1_type -2515 109 17 2 758 533 224 167 15 chr4 22705114 22705318 -132924802 - Tigger7 DNA MER2_type -120 2371 2137 2 758 296 339 112 70 chr4 22705323 22705510 -132924610 - Tigger7 DNA MER2_type -2183 308 114 2 758 371 245 81 25 chr4 22705510 22705707 -132924413 + L1MA6 LINE L1 6088 6295 -5 2 758 267 277 0 0 chr4 22706857 22706994 -132923126 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 758 194 33 67 0 chr4 22707019 22707049 -132923071 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 758 267 51 0 0 chr4 22707127 22707166 -132922954 + B1_Mm SINE Alu 109 147 0 2 758 275 0 29 0 chr4 22707168 22707203 -132922917 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 758 26 0 0 0 chr4 22707939 22707965 -132922155 + AT_rich Low_complexity Low_complexity 1 26 0 2 758 3503 25 0 0 chr4 22708513 22708909 -132921211 - MTA_Mm LTR MaLR 0 396 1 2 758 21 71 0 0 chr4 22709113 22709155 -132920965 + AT_rich Low_complexity Low_complexity 1 42 0 2 758 194 274 147 28 chr4 22709477 22709586 -132920534 + MIRb SINE MIR 41 162 -106 2 758 321 352 94 58 chr4 22709744 22710139 -132919981 - MLT1L LTR MaLR -1 609 201 2 758 1383 249 123 13 chr4 22710538 22710985 -132919135 - RMER5 LTR ERV1 -6 528 33 2 758 342 0 0 0 chr4 22711060 22711098 -132919022 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 758 423 0 0 0 chr4 22711098 22711144 -132918976 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 758 22 0 0 0 chr4 22711223 22711245 -132918875 + AT_rich Low_complexity Low_complexity 1 22 0 2 758 3678 140 56 8 chr4 22711257 22711862 -132918258 - Lx3B LINE L1 -7 6966 6333 2 758 1313 136 51 0 chr4 22711863 22712099 -132918021 + Lx3B LINE L1 6106 6353 -620 2 758 7603 115 38 11 chr4 22712426 22713421 -132916699 + L1_Mus3 LINE L1 4598 5628 -255 2 758 1174 62 7 0 chr4 22713421 22713567 -132916553 - B1_Mm SINE Alu 0 147 1 2 758 7603 68 11 9 chr4 22713567 22714569 -132915551 + L1_Mus3 LINE L1 5629 6638 0 2 758 1619 60 14 9 chr4 22715329 22715546 -132914574 + L1_Mus1 LINE L1 6350 6567 0 2 758 206 342 15 0 chr4 22715683 22715764 -132914356 - MIR SINE MIR -68 140 59 2 758 182 116 0 23 chr4 22716014 22716058 -132914062 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2 758 225 0 0 0 chr4 22716458 22716483 -132913637 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 758 535 172 15 0 chr4 22716496 22716630 -132913490 + Lx9 LINE L1 7502 7637 -7 2 758 847 210 96 4 chr4 22716632 22716904 -132913216 + Lx9 LINE L1 7348 7644 0 2 758 315 306 0 0 chr4 22717257 22717342 -132912778 + Lx7 LINE L1 6196 6280 -1416 2 758 576 287 56 24 chr4 22717341 22717591 -132912529 + Lx6 LINE L1 5853 6110 -1350 2 758 311 298 45 8 chr4 22717613 22717745 -132912375 + Lx9 LINE L1 6470 6606 -1038 2 758 285 51 0 0 chr4 22717745 22717784 -132912336 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2 758 944 164 6 0 chr4 22717784 22717961 -132912159 + CT-rich Low_complexity Low_complexity 3 180 0 2 758 979 266 36 28 chr4 22717990 22718349 -132911771 + Lx9 LINE L1 6618 6979 -665 2 758 25 31 0 0 chr4 22719324 22719356 -132910764 + AT_rich Low_complexity Low_complexity 1 32 0 2 758 678 47 0 0 chr4 22719780 22719866 -132910254 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 2 758 709 168 0 8 chr4 22719900 22720020 -132910100 - B2_Mm2 SINE B2 -71 124 6 2 758 342 45 0 0 chr4 22720491 22720535 -132909585 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 758 369 307 76 28 chr4 22721405 22721549 -132908571 - L2a LINE L2 -4 3422 3272 2 758 4065 120 66 6 chr4 22721697 22722334 -132907786 + Lx LINE L1 5979 6653 -1 2 758 422 336 29 45 chr4 22723052 22723295 -132906825 - L2a LINE L2 -866 2553 2315 2 758 292 363 23 6 chr4 22723347 22723519 -132906601 - L1MEg1 LINE L1 -6003 232 58 2 758 21 0 0 0 chr4 22723953 22723974 -132906146 + AT_rich Low_complexity Low_complexity 1 21 0 2 758 1374 331 51 31 chr4 22724449 22725253 -132904867 - Lx9 LINE L1 -359 7285 6466 2 758 370 275 15 49 chr4 22725279 22725482 -132904638 - Lx9 LINE L1 -6508 1100 905 2 758 27 0 0 0 chr4 22726435 22726462 -132903658 + AT_rich Low_complexity Low_complexity 1 27 0 2 758 467 38 0 60 chr4 22726606 22726689 -132903431 + L1Md_F2 LINE L1 6505 6582 0 2 758 1645 225 102 24 chr4 22726891 22727350 -132902770 + L1_Mur1 LINE L1 774 1268 -5716 2 758 1434 35 0 0 chr4 22727343 22727514 -132902606 - L1_Mus1 LINE L1 -741 5826 5656 2 758 5447 70 19 4 chr4 22727515 22728249 -132901871 + L1_Mus1 LINE L1 5823 6567 0 2 758 7966 197 21 10 chr4 22728261 22730036 -132900084 + L1_Mur1 LINE L1 1256 3050 -2827 2 758 636 242 103 18 chr4 22730026 22730327 -132899793 + Lx4B LINE L1 6656 7050 -8 2 758 25 51 0 0 chr4 22730531 22730570 -132899550 + AT_rich Low_complexity Low_complexity 1 39 0 2 758 237 278 27 36 chr4 22731870 22731982 -132898138 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 2 758 342 335 26 99 chr4 22732366 22732558 -132897562 + B3A SINE B2 2 179 -19 2 758 23 54 0 0 chr4 22733675 22733712 -132896408 + AT_rich Low_complexity Low_complexity 1 37 0 2 758 3276 103 14 6 chr4 22733826 22734312 -132895808 - L1_Mur1 LINE L1 -328 5558 5069 2 758 680 276 14 51 chr4 22734952 22735166 -132894954 + B3 SINE B2 1 206 -10 2 758 37381 19 0 7 chr4 22735319 22740505 -132889615 + L1Md_A LINE L1 443 5586 -297 2 758 8797 14 0 0 chr4 22740505 22741501 -132888619 + L1Md_A LINE L1 5587 6582 0 2 758 24 0 0 0 chr4 22741754 22741778 -132888342 + AT_rich Low_complexity Low_complexity 1 24 0 2 758 1314 40 0 17 chr4 22741933 22742113 -132888007 + (GAA)n Simple_repeat Simple_repeat 2 178 0 2 758 26 30 0 0 chr4 22742526 22742559 -132887561 + AT_rich Low_complexity Low_complexity 1 33 0 2 758 34 24 0 0 chr4 22742603 22742644 -132887476 + AT_rich Low_complexity Low_complexity 1 41 0 2 758 4084 127 17 2 chr4 22742661 22743298 -132886822 - Lx LINE L1 -6 6648 6002 2 758 6361 131 18 41 chr4 22743303 22744643 -132885477 - Lx LINE L1 -7 6647 5331 3 758 3713 145 6 3 chr4 22744637 22745267 -132884853 - L1_Mur2 LINE L1 -1972 3905 3274 3 758 1880 295 119 74 chr4 22745524 22746399 -132883721 - Lx5 LINE L1 -16 7444 6455 3 758 852 269 56 3 chr4 22746415 22746702 -132883418 - Lx5 LINE L1 -1216 6244 5943 3 758 534 364 36 18 chr4 22746869 22747258 -132882862 - Lx9 LINE L1 -171 7473 7078 3 758 1055 93 0 0 chr4 22747345 22747484 -132882636 - B1_Mm SINE Alu -7 140 2 3 758 2727 188 9 16 chr4 22747591 22748343 -132881777 + L1_Mur3 LINE L1 982 1724 -4153 3 758 441 272 44 0 chr4 22748345 22748481 -132881639 + Lx5 LINE L1 6905 7046 -4 3 758 1641 339 18 31 chr4 22748521 22749002 -132881118 - Lx9 LINE L1 -594 7050 6576 3 758 1167 134 119 0 chr4 22749002 22749203 -132880917 + URR1A DNA MER1_type 1 225 -1 3 758 1641 339 18 31 chr4 22749203 22749433 -132880687 - Lx9 LINE L1 -1069 6575 6348 3 758 517 231 99 11 chr4 22749445 22749663 -132880457 - L1_Rod LINE L1 -423 5457 5206 3 758 622 245 12 24 chr4 22749663 22749830 -132880290 - ORR1D2 LTR MaLR 0 370 206 3 758 1669 263 72 80 chr4 22749860 22750652 -132879468 - L1_Rod LINE L1 -669 5178 4393 3 758 502 293 120 49 chr4 22750650 22750981 -132879139 - L1_Rod LINE L1 -1980 3867 3507 3 758 261 0 0 0 chr4 22750981 22751010 -132879110 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3 758 502 293 120 49 chr4 22751010 22751309 -132878811 - L1_Rod LINE L1 -2341 3506 3193 3 758 239 261 26 17 chr4 22751516 22751538 -132878582 + T-rich Low_complexity Low_complexity 98 119 0 3 758 3346 38 5 0 chr4 22751538 22751932 -132878188 + MTA_Mm LTR MaLR 1 396 0 3 758 239 261 26 17 chr4 22751932 22752026 -132878094 + T-rich Low_complexity Low_complexity 3 97 0 3 758 879 268 94 39 chr4 22752048 22752460 -132877660 - L1_Rod LINE L1 -4422 1425 983 3 758 5460 168 27 0 chr4 22753169 22754145 -132875975 - Lx2B LINE L1 -3 6997 5996 3 758 2752 153 63 22 chr4 22754272 22754760 -132875360 + L1VL4 LINE L1 183 690 -5612 3 758 1195 140 9 9 chr4 22754756 22754972 -132875148 + Lx5 LINE L1 4626 4841 -1045 3 758 4019 76 43 85 chr4 22754972 22755264 -132874856 + RLTR13D5 LTR ERVK 1 306 -717 3 758 1198 61 0 0 chr4 22755264 22755411 -132874709 + B1_Mm SINE Alu 1 147 0 3 758 4019 76 43 85 chr4 22755411 22755767 -132874353 + RLTR13D5 LTR ERVK 307 622 -401 3 758 13854 169 29 12 chr4 22755769 22759187 -132870933 + Lx4B LINE L1 3226 6714 -344 3 758 5113 187 55 16 chr4 22759196 22760514 -132869606 + Lx5 LINE L1 5294 6675 -375 3 758 351 0 0 0 chr4 22761292 22761331 -132868789 + (A)n Simple_repeat Simple_repeat 1 39 0 3 758 24 53 0 0 chr4 22762070 22762108 -132868012 + AT_rich Low_complexity Low_complexity 1 38 0 3 758 378 0 0 0 chr4 22766795 22766837 -132863283 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 758 906 99 0 0 chr4 22767739 22767870 -132862250 + (GAA)n Simple_repeat Simple_repeat 2 132 0 3 758 3107 42 8 5 chr4 22768493 22768880 -132861240 - RLTR10 LTR ERVK -2 388 1 3 758 1301 51 74 0 chr4 22769105 22769280 -132860840 - B2_Mm1t SINE B2 -4 189 2 3 758 7821 84 6 1 chr4 22769880 22771037 -132859083 + L1_Mus3 LINE L1 5475 6636 -2 3 758 2804 132 20 10 chr4 22771033 22771631 -132858489 + Lx3B LINE L1 5402 6009 -964 3 758 1889 153 39 12 chr4 22771632 22771970 -132858150 + Lx3B LINE L1 6624 6970 -3 3 758 25 0 0 0 chr4 22771973 22771998 -132858122 + AT_rich Low_complexity Low_complexity 1 25 0 3 758 3880 105 148 85 chr4 22774234 22775070 -132855050 + RMER17D LTR ERVK 1 889 0 3 758 400 335 89 108 chr4 22775542 22775801 -132854319 - MTEa LTR MaLR -59 320 54 3 758 2892 150 111 50 chr4 22775801 22776377 -132853743 + RMER19C LTR ERVK 1 611 0 3 758 400 335 89 108 chr4 22776377 22776442 -132853678 - MTEa LTR MaLR -326 53 2 3 758 763 279 76 76 chr4 22776897 22777248 -132852872 + ORR1E LTR MaLR 1 379 0 3 758 264 154 0 0 chr4 22777400 22777452 -132852668 + A-rich Low_complexity Low_complexity 1 52 0 3 758 181 362 0 24 chr4 22778509 22778591 -132851529 - L2a LINE L2 0 3426 3347 3 758 21529 20 1 0 chr4 22778612 22781134 -132848986 + L1Md_T LINE L1 3062 5586 -297 3 758 8964 6 0 0 chr4 22781134 22782130 -132847990 + L1Md_T LINE L1 5587 6582 0 3 758 220 147 72 14 chr4 22782515 22782584 -132847536 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 3 758 1636 175 84 3 chr4 22783287 22783619 -132846501 + RLTR15 LTR ERVK 1 359 0 3 758 356 295 86 0 chr4 22783994 22784099 -132846021 + RSINE1 SINE B4 2 115 -50 3 758 587 236 13 94 chr4 22784099 22784258 -132845862 + B1_Mus1 SINE Alu 1 146 -2 3 758 3795 96 4 2 chr4 22784535 22785066 -132845054 + L1_Mus4 LINE L1 6101 6632 -4 3 758 31439 85 17 6 chr4 22785443 22790408 -132839712 + L1Md_F2 LINE L1 563 5586 -297 3 758 7855 54 1 5 chr4 22790408 22791396 -132838724 + L1Md_F2 LINE L1 5587 6570 -12 3 758 3119 195 16 3 chr4 22791759 22792403 -132837717 - L1_Mur2 LINE L1 -194 5683 5032 3 758 1097 144 46 0 chr4 22792399 22792594 -132837526 + Lx2B LINE L1 6092 6295 -705 3 758 414 0 0 0 chr4 22792643 22792689 -132837431 + (TAG)n Simple_repeat Simple_repeat 1 46 0 3 758 2558 164 35 4 chr4 22792729 22793193 -132836927 + Lx2B LINE L1 6521 6998 -2 3 758 281 261 10 52 chr4 22793216 22793313 -132836807 + Charlie5 DNA MER1_type 2522 2614 -10 3 758 211 0 88 0 chr4 22794612 22794646 -132835474 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 758 390 248 143 8 chr4 22794864 22794990 -132835130 + MLT1E3 LTR MaLR 475 617 -7 3 758 450 65 0 0 chr4 22795278 22795340 -132834780 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 758 2394 302 125 41 chr4 22796095 22796140 -132833980 + Lx8 LINE L1 6127 6198 -1275 3 758 387 0 0 0 chr4 22796140 22796183 -132833937 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 758 2394 302 125 41 chr4 22796183 22797354 -132832766 + Lx8 LINE L1 6199 7445 -28 3 758 22 0 0 0 chr4 22798093 22798115 -132832005 + AT_rich Low_complexity Low_complexity 1 22 0 3 758 193 321 133 21 chr4 22798307 22798450 -132831670 - MIRc SINE MIR 0 268 110 3 758 621 286 38 14 chr4 22798803 22799012 -132831108 - MER63B DNA AcHobo -3 433 220 3 758 246 257 0 0 chr4 22799073 22799147 -132830973 - MER63B DNA AcHobo -326 110 37 3 758 228 246 45 15 chr4 22799355 22799421 -132830699 - MLT1C LTR MaLR -147 320 253 3 758 224 314 25 2 chr4 22799742 22799831 -132830289 + MIRb SINE MIR 168 255 -7 3 758 187 103 51 0 chr4 22800047 22800086 -132830034 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 758 614 280 106 17 chr4 22800256 22800492 -132829628 - Lx9 LINE L1 -336 7308 7052 3 758 306 323 16 0 chr4 22800528 22800652 -132829468 - L1MDa LINE L1 -6482 151 26 3 758 675 304 104 33 chr4 22801013 22801312 -132828808 + MTEb LTR MaLR 56 375 -4 3 758 463 248 0 0 chr4 22802084 22802193 -132827927 + Lx9 LINE L1 7302 7410 -234 3 758 342 0 0 0 chr4 22802193 22802231 -132827889 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 758 529 14 29 0 chr4 22802231 22802300 -132827820 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 758 314 267 0 0 chr4 22802557 22802632 -132827488 - MIRc SINE MIR 0 268 194 3 758 190 294 123 38 chr4 22803028 22803134 -132826986 + L3 LINE CR1 4180 4294 -195 3 758 225 209 29 29 chr4 22803196 22803265 -132826855 + (TATG)n Simple_repeat Simple_repeat 2 70 0 3 758 537 310 81 35 chr4 22803284 22803545 -132826575 - B4A SINE B4 -18 274 2 3 758 26 50 0 0 chr4 22803686 22803726 -132826394 + AT_rich Low_complexity Low_complexity 1 40 0 3 758 546 91 0 0 chr4 22803806 22803883 -132826237 + (CATA)n Simple_repeat Simple_repeat 3 79 0 3 758 239 358 66 0 chr4 22803892 22804029 -132826091 - Lx9 LINE L1 -242 7402 7257 3 758 362 274 238 58 chr4 22804037 22804277 -132825843 + Lx9 LINE L1 6955 7237 -407 3 758 1104 244 148 20 chr4 22804995 22805346 -132824774 + MTD LTR MaLR 23 418 -1 3 758 196 357 62 20 chr4 22805540 22805686 -132824434 + L2a LINE L2 3266 3417 -9 3 759 261 0 0 0 chr4 22807277 22807306 -132822814 + (CAA)n Simple_repeat Simple_repeat 1 29 0 3 759 23 0 0 0 chr4 22807441 22807464 -132822656 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 531 0 0 0 chr4 22808406 22808465 -132821655 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 759 369 291 68 0 chr4 22810090 22810193 -132819927 + RMER1B Other Other 602 711 -355 3 759 232 377 9 0 chr4 22810519 22810625 -132819495 + RMER1C Other Other 34 140 -1202 3 759 3595 239 27 114 chr4 22810666 22811804 -132818316 + RMER1C Other Other 330 1327 -15 3 759 6955 119 36 8 chr4 22811799 22813187 -132816933 + Lx LINE L1 5227 6649 -5 3 759 241 289 0 0 chr4 22813199 22813251 -132816869 + B1_Mus2 SINE Alu 1 52 -95 3 759 10225 178 34 40 chr4 22813252 22816411 -132813709 + Lx5 LINE L1 3670 6826 -224 3 759 1350 70 0 0 chr4 22816419 22816732 -132813388 + (GA)n Simple_repeat Simple_repeat 1 313 0 3 759 324 149 110 44 chr4 22816736 22816827 -132813293 + L1_Mur3 LINE L1 2073 2169 -3711 3 759 23 0 0 0 chr4 22818046 22818069 -132812051 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 282 312 107 28 chr4 22818876 22819054 -132811066 - B3A SINE B2 -6 192 1 3 759 371 389 0 0 chr4 22819140 22819279 -132810841 - L4 LINE RTE -639 1390 1252 3 759 23 0 0 0 chr4 22820571 22820594 -132809526 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 192 200 0 0 chr4 22821228 22821268 -132808852 + CT-rich Low_complexity Low_complexity 4 43 0 3 759 676 225 16 0 chr4 22821280 22821409 -132808711 - B1_Mur1 SINE Alu -17 132 2 3 759 23 33 0 0 chr4 22822380 22822410 -132807710 + AT_rich Low_complexity Low_complexity 1 30 0 3 759 2261 209 12 78 chr4 22822531 22823186 -132806934 - L1_Mur2 LINE L1 -3472 2405 1794 3 759 353 307 54 97 chr4 22823227 22823505 -132806615 - RLTR11A2 LTR ERVK -8 519 254 3 759 848 230 68 40 chr4 22823513 22823735 -132806385 + RMER20B LTR ERVK 372 599 -28 3 759 717 204 0 0 chr4 22824441 22824608 -132805512 + CT-rich Low_complexity Low_complexity 1 167 0 3 759 6909 178 39 5 chr4 22824664 22826358 -132803762 - Lx3C LINE L1 -2 6974 5234 3 759 535 139 10 10 chr4 22826616 22826718 -132803402 + T-rich Low_complexity Low_complexity 2 103 0 3 759 475 382 122 4 chr4 22827398 22827653 -132802467 + B4A SINE B4 2 286 -6 3 759 3018 204 40 16 chr4 22827740 22828416 -132801704 - L1_Mur3 LINE L1 -767 5113 4422 3 759 37944 30 0 0 chr4 22828425 22834847 -132795273 - L1Md_T LINE L1 0 6585 66 3 759 288 77 0 0 chr4 22834858 22834897 -132795223 + (T)n Simple_repeat Simple_repeat 1 39 0 3 759 1033 128 0 0 chr4 22834945 22835093 -132795027 - B1_Mus1 SINE Alu 0 148 1 4 759 3088 222 15 121 chr4 22835095 22836874 -132793246 - L1_Mur3 LINE L1 -1450 4430 2965 3 759 446 244 55 6 chr4 22836873 22837038 -132793082 - L1_Mur3 LINE L1 -3834 2043 1871 3 759 450 202 18 0 chr4 22837040 22837154 -132792966 - Lx2A LINE L1 0 7008 6893 4 759 446 244 55 6 chr4 22837170 22837335 -132792785 - L1_Mur2 LINE L1 -3834 2043 1871 4 759 872 206 105 0 chr4 22837337 22837546 -132792574 - Lx2A1 LINE L1 0 7008 6778 4 759 2223 102 0 0 chr4 22837551 22837866 -132792254 + L1_Mm LINE L1 4591 4905 -978 4 759 1545 302 26 12 chr4 22838313 22838738 -132791382 - Lx6 LINE L1 -123 7337 6907 4 759 182 311 26 39 chr4 22838955 22839032 -132791088 + L2b LINE L2 3291 3366 -9 4 759 22 0 0 0 chr4 22839513 22839535 -132790585 + AT_rich Low_complexity Low_complexity 1 22 0 4 759 191 260 20 0 chr4 22841259 22841309 -132788811 - MIRc SINE MIR -37 231 181 4 759 315 0 0 0 chr4 22841882 22841917 -132788203 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 759 180 111 0 0 chr4 22841992 22842019 -132788101 + (T)n Simple_repeat Simple_repeat 1 27 0 4 759 211 332 37 65 chr4 22842478 22842654 -132787466 - MIRc SINE MIR -83 185 16 4 759 977 267 115 15 chr4 22843257 22843595 -132786525 + MTEa LTR MaLR 3 374 -5 4 759 604 238 84 89 chr4 22843738 22843941 -132786179 - B3 SINE B2 -13 203 2 4 759 576 300 184 23 chr4 22844244 22844814 -132785306 + L1MC4 LINE L1 7212 7873 -169 4 759 331 269 11 21 chr4 22845003 22845098 -132785022 - Lx8 LINE L1 -738 6735 6642 4 759 876 219 46 64 chr4 22845105 22845167 -132784953 - MTC LTR MaLR -4 417 356 4 759 360 18 53 0 chr4 22845167 22845224 -132784896 + (TTG)n Simple_repeat Simple_repeat 2 61 0 4 759 876 219 46 64 chr4 22845224 22845380 -132784740 - MTC LTR MaLR -66 355 203 4 759 260 122 41 0 chr4 22845388 22845437 -132784683 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 759 297 0 0 0 chr4 22846277 22846310 -132783810 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 759 21 0 0 0 chr4 22846364 22846385 -132783735 + AT_rich Low_complexity Low_complexity 1 21 0 4 759 378 143 0 0 chr4 22847919 22847982 -132782138 + (CCCCCT)n Simple_repeat Simple_repeat 1 63 0 4 759 1044 99 11 11 chr4 22847984 22848158 -132781962 + (TTCCC)n Simple_repeat Simple_repeat 4 177 0 4 759 1589 189 105 3 chr4 22848158 22848482 -132781638 - Lx2B LINE L1 -3 6997 6641 4 759 819 57 0 0 chr4 22849238 22849343 -132780777 + (CA)n Simple_repeat Simple_repeat 1 105 0 4 759 512 298 99 6 chr4 22849346 22849508 -132780612 - B3A SINE B2 -21 177 1 4 759 1908 299 50 100 chr4 22849548 22850662 -132779458 - Lx5 LINE L1 -18 7032 5982 4 759 435 338 109 43 chr4 22850738 22851323 -132778797 - L2a LINE L2 -39 3387 2759 4 759 24 0 0 0 chr4 22851849 22851873 -132778247 + AT_rich Low_complexity Low_complexity 1 24 0 4 759 380 37 19 0 chr4 22852748 22852802 -132777318 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 759 180 77 0 0 chr4 22852805 22852831 -132777289 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 4 759 261 0 0 0 chr4 22857274 22857303 -132772817 + (T)n Simple_repeat Simple_repeat 1 29 0 4 759 294 299 69 40 chr4 22858182 22858283 -132771837 + MER63D DNA AcHobo 272 375 -686 4 759 195 100 0 0 chr4 22858912 22858942 -132771178 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 759 567 344 48 16 chr4 22859868 22860057 -132770063 - B3A SINE B2 -1 197 3 4 759 332 130 0 52 chr4 22860986 22861083 -132769037 + A-rich Low_complexity Low_complexity 1 92 0 4 759 394 212 0 0 chr4 22861650 22861730 -132768390 - B3 SINE B2 -7 209 130 4 759 13277 188 60 23 chr4 22861983 22865154 -132764966 - L1_Mur3 LINE L1 -378 5502 2212 4 759 405 322 8 8 chr4 22865257 22865379 -132764741 + B1F SINE Alu 19 140 -9 4 759 1579 192 49 40 chr4 22865986 22866334 -132763786 + Lx5 LINE L1 6699 7049 -1 4 759 25 0 0 0 chr4 22866334 22866359 -132763761 + AT_rich Low_complexity Low_complexity 1 25 0 4 759 3258 204 54 32 chr4 22866589 22866747 -132763373 - L1_Mur3 LINE L1 -3663 2217 2073 4 759 297 0 0 0 chr4 22866747 22866780 -132763340 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 759 279 0 0 0 chr4 22866780 22866810 -132763310 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 759 3258 204 54 32 chr4 22866810 22867555 -132762565 - L1_Mur3 LINE L1 -3808 2072 1294 4 759 276 329 116 53 chr4 22867810 22868035 -132762085 - MIRb SINE MIR -6 262 24 4 759 1375 83 16 5 chr4 22868312 22868505 -132761615 - B2_Mm2 SINE B2 0 195 1 4 759 1607 226 103 8 chr4 22868700 22868872 -132761248 - MTC LTR MaLR -1 420 249 4 759 366 23 0 0 chr4 22868872 22868915 -132761205 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 759 1607 226 103 8 chr4 22868915 22869122 -132760998 - MTC LTR MaLR -173 248 6 4 759 216 241 0 18 chr4 22870117 22870172 -132759948 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 759 25 51 0 0 chr4 22870865 22870904 -132759216 + AT_rich Low_complexity Low_complexity 1 39 0 4 759 322 328 95 22 chr4 22871538 22871675 -132758445 - B4A SINE B4 -117 175 29 4 759 252 86 0 0 chr4 22871787 22871822 -132758298 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 759 197 77 51 0 chr4 22872761 22872800 -132757320 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 759 711 0 0 0 chr4 22875529 22875608 -132754512 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 759 465 66 0 0 chr4 22875653 22875714 -132754406 + (GGA)n Simple_repeat Simple_repeat 3 63 0 4 759 707 239 13 0 chr4 22877837 22877996 -132752124 - Lx5 LINE L1 0 7050 6890 4 759 1029 181 24 0 chr4 22879349 22879559 -132750561 + Lx3A LINE L1 6760 6974 -7 4 759 242 115 19 0 chr4 22879564 22879616 -132750504 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 759 428 262 92 26 chr4 22881576 22881592 -132748528 - RSINE1 SINE B4 0 165 150 4 759 708 46 18 18 chr4 22881592 22881702 -132748418 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 4 759 428 262 92 26 chr4 22881702 22881724 -132748396 - RSINE1 SINE B4 -16 149 123 4 759 354 23 0 0 chr4 22881724 22881767 -132748353 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 759 428 262 92 26 chr4 22881767 22881880 -132748240 - RSINE1 SINE B4 -43 122 3 4 759 314 343 126 47 chr4 22883864 22884142 -132745978 - LTR52 LTR ERVL -37 384 85 4 759 918 62 0 0 chr4 22884144 22884274 -132745846 + (GA)n Simple_repeat Simple_repeat 1 130 0 4 759 237 301 29 19 chr4 22885141 22885246 -132744874 - HAL1 LINE L1 -1 2506 2401 4 759 436 200 95 0 chr4 22885802 22885897 -132744223 - PB1D10 SINE Alu -7 110 7 4 759 374 205 310 9 chr4 22885897 22885908 -132744212 - ID_B1 SINE B4 0 177 78 4 759 391 312 90 7 chr4 22887803 22887958 -132742162 + MIR SINE MIR 74 241 -21 4 759 1036 311 78 28 chr4 22887993 22888393 -132741727 - MLT2B1 LTR ERVL -56 464 45 4 759 219 69 0 0 chr4 22889143 22889172 -132740948 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 759 923 321 80 75 chr4 22889659 22889725 -132740395 + MLT1E3 LTR MaLR 1 71 -553 4 759 555 296 121 12 chr4 22889725 22890057 -132740063 - ORR1D2 LTR MaLR -2 368 1 4 759 923 321 80 75 chr4 22890057 22890391 -132739729 + MLT1E3 LTR MaLR 72 403 -221 4 759 1139 31 37 0 chr4 22890582 22890744 -132739376 + (TCTA)n Simple_repeat Simple_repeat 2 169 0 4 759 248 261 9 140 chr4 22891528 22891565 -132738555 + PB1D10 SINE Alu 24 53 -64 4 759 3495 18 2 0 chr4 22891565 22891960 -132738160 + MTA_Mm LTR MaLR 1 396 0 4 759 248 261 9 140 chr4 22891960 22892029 -132738091 + PB1D10 SINE Alu 54 116 -1 4 759 189 107 0 0 chr4 22897461 22897489 -132732631 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 759 243 290 103 0 chr4 22897975 22898082 -132732038 - Charlie11 DNA MER1_type -996 1200 1083 4 759 293 0 0 26 chr4 22898948 22898986 -132731134 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 759 264 221 0 0 chr4 22899009 22899086 -132731034 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 759 704 264 60 0 chr4 22899276 22899443 -132730677 - B3 SINE B2 -34 182 6 4 759 373 132 0 29 chr4 22902220 22902290 -132727830 + B2_Mm2 SINE B2 122 189 -6 4 759 189 366 93 10 chr4 22902456 22902649 -132727471 + L2 LINE L2 2584 2792 -627 4 759 677 194 6 0 chr4 22902756 22902926 -132727194 + GA-rich Low_complexity Low_complexity 1 171 0 4 759 282 325 74 8 chr4 22902965 22903086 -132727034 - RSINE1 SINE B4 -33 132 4 4 759 372 263 57 28 chr4 22903286 22903427 -132726693 + L2a LINE L2 3265 3409 -17 4 759 1058 244 74 28 chr4 22903797 22903930 -132726190 - ORR1D1 LTR MaLR 0 374 229 4 759 222 91 0 0 chr4 22903930 22903963 -132726157 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 4 759 1058 244 74 28 chr4 22903963 22904112 -132726008 - ORR1D1 LTR MaLR -146 228 79 4 759 1117 52 0 0 chr4 22904135 22904269 -132725851 + B1_Mm SINE Alu 1 134 -13 4 759 614 117 8 0 chr4 22904427 22904547 -132725573 + (GA)n Simple_repeat Simple_repeat 2 122 0 4 759 572 317 78 27 chr4 22905149 22905444 -132724676 + MLT1B LTR MaLR 6 315 -75 4 759 213 351 38 38 chr4 22906261 22906341 -132723779 - L3 LINE CR1 -89 4400 4321 4 759 876 239 89 32 chr4 22906411 22906437 -132723683 - MTD LTR MaLR -34 385 363 4 759 2149 38 193 0 chr4 22906437 22906727 -132723393 - ORR1A0 LTR MaLR 0 346 1 4 759 876 239 89 32 chr4 22906727 22906946 -132723174 - MTD LTR MaLR -57 362 126 4 759 1080 62 7 20 chr4 22906986 22907133 -132722987 - B1_Mm SINE Alu -1 146 2 4 759 28 61 0 0 chr4 22907283 22907332 -132722788 + AT_rich Low_complexity Low_complexity 1 49 0 4 759 201 39 0 0 chr4 22908338 22908364 -132721756 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 759 312 91 0 0 chr4 22909964 22910008 -132720112 + (GGA)n Simple_repeat Simple_repeat 3 46 0 4 759 337 234 41 31 chr4 22910548 22910645 -132719475 - B1F SINE Alu 0 149 52 4 759 189 94 0 0 chr4 22910696 22910728 -132719392 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 759 23 33 0 0 chr4 22911110 22911140 -132718980 + AT_rich Low_complexity Low_complexity 1 30 0 4 759 22 35 0 0 chr4 22911829 22911858 -132718262 + AT_rich Low_complexity Low_complexity 1 29 0 4 759 250 211 0 37 chr4 22912455 22912509 -132717611 + polypyrimidine Low_complexity Low_complexity 1 52 0 4 759 315 0 0 0 chr4 22913125 22913160 -132716960 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 759 335 252 104 59 chr4 22914429 22914564 -132715556 + HAL1-3A_ME LINE L1 1974 2114 -744 5 759 1117 276 39 24 chr4 22915737 22916150 -132713970 - MTC LTR MaLR 0 421 3 5 759 284 70 0 23 chr4 22916261 22916305 -132713815 + (TTA)n Simple_repeat Simple_repeat 1 43 0 5 759 189 175 0 0 chr4 22916492 22916532 -132713588 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 759 2167 249 41 95 chr4 22916549 22917395 -132712725 - Lx7 LINE L1 -1 7695 6895 5 759 2645 219 51 35 chr4 22917394 22918393 -132711727 - Lx7 LINE L1 -1409 6287 5247 5 759 365 304 8 17 chr4 22918405 22918522 -132711598 + Lx9 LINE L1 7139 7254 -390 5 759 35 41 0 0 chr4 22918585 22918634 -132711486 + AT_rich Low_complexity Low_complexity 1 49 0 5 759 319 296 43 22 chr4 22918926 22919064 -132711056 - L1M5 LINE L1 -616 5546 5406 5 759 22 0 0 0 chr4 22919299 22919321 -132710799 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 474 269 97 0 chr4 22919359 22919638 -132710482 + L1M2 LINE L1 5096 5409 -438 5 759 894 283 30 102 chr4 22919648 22919804 -132710316 + Lx6 LINE L1 7120 7243 -217 5 759 1027 78 50 0 chr4 22919804 22919945 -132710175 - B1_Mus1 SINE Alu 0 148 1 5 759 894 283 30 102 chr4 22919945 22920150 -132709970 + Lx6 LINE L1 7244 7455 -5 5 759 504 285 11 44 chr4 22920144 22920326 -132709794 + L1M2 LINE L1 5484 5659 -632 5 759 335 332 79 25 chr4 22920335 22920576 -132709544 - L1MD LINE L1 -1664 4482 4229 5 759 4363 258 58 10 chr4 22920706 22921799 -132708321 + Lx7 LINE L1 6275 7419 -277 5 759 584 246 86 9 chr4 22922013 22922234 -132707886 - Lx9 LINE L1 -2 7642 7405 5 759 509 329 55 5 chr4 22922564 22922781 -132707339 + L1MB1 LINE L1 5774 6001 -167 5 759 301 149 0 29 chr4 22923068 22923137 -132706983 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 759 351 0 0 0 chr4 22926694 22926733 -132703387 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 759 243 0 0 0 chr4 22926745 22926772 -132703348 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 759 24 0 0 0 chr4 22928441 22928465 -132701655 + AT_rich Low_complexity Low_complexity 1 24 0 5 759 759 271 181 56 chr4 22929104 22929250 -132700870 + MTD LTR MaLR 1 195 -224 5 759 297 0 0 0 chr4 22929250 22929283 -132700837 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 759 759 271 181 56 chr4 22929283 22929496 -132700624 + MTD LTR MaLR 196 405 -14 5 759 512 344 6 47 chr4 22929681 22929852 -132700268 + RSINE1 SINE B4 2 165 0 5 759 296 161 0 16 chr4 22929864 22929927 -132700193 + (CTA)n Simple_repeat Simple_repeat 1 62 0 5 759 29954 111 15 22 chr4 22930477 22936051 -132694069 - L1_Mus4 LINE L1 0 6636 1090 5 759 2273 238 65 31 chr4 22936051 22937030 -132693090 - L1_Mus4 LINE L1 -5433 1205 218 5 94 1941 270 23 24 chr4 22937043 22937659 -132692461 - L1VL4 LINE L1 -5534 768 154 5 760 203 360 51 41 chr4 22937740 22937937 -132692183 + L2 LINE L2 2240 2438 -981 5 760 193 368 108 39 chr4 22938055 22938389 -132691731 + L2 LINE L2 2290 2646 -773 5 760 22 56 0 0 chr4 22938432 22938468 -132691652 + AT_rich Low_complexity Low_complexity 1 36 0 5 760 282 73 0 0 chr4 22938589 22938630 -132691490 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 760 351 60 0 0 chr4 22938750 22938800 -132691320 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 5 760 411 21 0 0 chr4 22938900 22938948 -132691172 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 760 309 305 94 26 chr4 22939024 22939216 -132690904 - Lx8 LINE L1 -443 7030 6826 5 760 1811 209 56 25 chr4 22939283 22939691 -132690429 + MTC LTR MaLR 1 421 0 5 760 476 305 61 106 chr4 22939795 22940220 -132689900 - Lx8 LINE L1 -658 6815 6410 5 760 30 0 0 0 chr4 22941958 22941988 -132688132 + AT_rich Low_complexity Low_complexity 1 30 0 5 760 9182 64 2 2 chr4 22941988 22943847 -132686273 - L1Md_F2 LINE L1 -15 6567 4707 5 760 244 360 64 13 chr4 22944223 22944459 -132685661 - L1MA9 LINE L1 -213 6163 5916 5 760 88 78 0 0 chr4 22944523 22944716 -132685404 + AT_rich Low_complexity Low_complexity 1 193 0 5 760 239 328 97 28 chr4 22944724 22944900 -132685220 - L1MA9 LINE L1 -499 5856 5669 5 760 735 296 120 16 chr4 22945088 22945994 -132684126 - L1MA9 LINE L1 -769 5438 4416 5 760 228 288 169 15 chr4 22946135 22946336 -132683784 - L1MA9 LINE L1 -4784 1357 1126 5 760 291 399 94 15 chr4 22946789 22947130 -132682990 - L1MA9 LINE L1 -5535 596 229 5 760 6290 84 9 24 chr4 22947206 22948099 -132682021 - L1Md_F2 LINE L1 0 6582 5703 5 760 214 341 0 23 chr4 22948103 22948190 -132681930 - MIRb SINE MIR -90 178 94 5 760 1739 55 0 0 chr4 22948358 22948576 -132681544 + L1Md_T LINE L1 6364 6581 -1 5 760 1197 273 84 33 chr4 22949801 22950360 -132679760 + MERVL_2A-int LTR ERVL 4941 5485 -276 5 760 327 333 119 137 chr4 22950375 22950539 -132679581 - B3A SINE B2 0 216 57 5 760 2242 80 3 6 chr4 22950539 22950852 -132679268 - L1_Mus2 LINE L1 0 6566 6255 5 760 227 333 119 137 chr4 22950852 22950906 -132679214 - B3 SINE B2 -157 59 2 5 760 385 290 82 27 chr4 22950960 22951180 -132678940 + MERVL_2A-int LTR ERVL 5524 5755 -2 5 760 47 89 0 0 chr4 22951428 22951552 -132678568 + AT_rich Low_complexity Low_complexity 1 124 0 5 760 1186 332 26 44 chr4 22951661 22952248 -132677872 - Lx7 LINE L1 -396 7300 6725 5 760 413 19 19 0 chr4 22952261 22952315 -132677805 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 760 3692 147 24 2 chr4 22952404 22952984 -132677136 - Lx4A LINE L1 -114 6944 6352 5 760 1191 282 80 25 chr4 22952987 22953418 -132676702 - Lx6 LINE L1 -146 7550 6842 5 760 189 141 15 59 chr4 22953438 22953506 -132676614 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 760 1646 273 62 8 chr4 22953529 22954045 -132676075 - Lx6 LINE L1 -586 6874 6331 5 760 3962 236 40 27 chr4 22954043 22955336 -132674784 - Lx6 LINE L1 -1376 6084 4769 5 760 368 260 39 0 chr4 22955328 22955432 -132674688 + Lx6 LINE L1 4695 4802 -1078 5 760 5684 199 46 77 chr4 22955416 22957058 -132673062 - Lx6 LINE L1 -2440 3440 1849 5 760 475 317 178 29 chr4 22957109 22957942 -132672178 + L1MA4A LINE L1 4381 5339 -541 5 760 2175 180 5 3 chr4 22958006 22958395 -132671725 + ORR1B1 LTR MaLR 1 390 -4 5 760 661 315 46 8 chr4 22958436 22958841 -132671279 + L1MA4A LINE L1 5544 5932 -371 5 760 477 306 34 0 chr4 22959843 22959990 -132670130 - L1MC1 LINE L1 -18 6315 6164 5 760 635 162 0 50 chr4 22961360 22961433 -132668687 + polypyrimidine Low_complexity Low_complexity 109 176 0 5 760 1317 78 0 0 chr4 22961433 22961612 -132668508 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 5 760 635 162 0 50 chr4 22961612 22961720 -132668400 + polypyrimidine Low_complexity Low_complexity 4 108 0 5 760 478 282 7 0 chr4 22961721 22961863 -132668257 - B1_Mus1 SINE Alu -1 147 5 5 760 227 225 42 0 chr4 22962093 22962164 -132667956 + CT-rich Low_complexity Low_complexity 1 74 0 5 760 509 73 0 0 chr4 22962227 22962295 -132667825 - L1_Mm LINE L1 -839 5044 4977 5 760 7100 50 11 0 chr4 22962295 22963163 -132666957 + L1_Mus1 LINE L1 5687 6564 -3 5 760 210 296 14 14 chr4 22966530 22966602 -132663518 + GA-rich Low_complexity Low_complexity 2 73 0 5 760 417 369 43 22 chr4 22967335 22967565 -132662555 + MTEa LTR MaLR 145 379 0 5 760 229 252 150 31 chr4 22967568 22967695 -132662425 - L3 LINE CR1 -4255 234 93 5 760 354 61 0 0 chr4 22968691 22968740 -132661380 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 5 760 209 200 0 0 chr4 22968758 22968803 -132661317 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 760 416 316 40 15 chr4 22970380 22970579 -132659541 + MER63D DNA AcHobo 121 324 -737 5 760 1394 135 0 9 chr4 22970789 22971013 -132659107 - Lx2 LINE L1 -1 6996 6775 5 760 5425 130 29 1 chr4 22971013 22971863 -132658257 - Lx2 LINE L1 -354 6643 5770 5 760 21522 69 4 3 chr4 22971871 22975457 -132654663 - L1Md_F2 LINE L1 -1 6581 2990 5 760 492 72 0 0 chr4 22976654 22976723 -132653397 + (TAG)n Simple_repeat Simple_repeat 1 69 0 5 760 892 157 0 22 chr4 22976769 22976951 -132653169 + GA-rich Low_complexity Low_complexity 3 180 0 5 760 307 121 0 70 chr4 22978844 22978915 -132651205 - Lx LINE L1 -1 6653 6588 5 760 216 67 0 0 chr4 22979340 22979370 -132650750 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 760 1641 259 67 7 chr4 22979382 22979828 -132650292 - Lx6 LINE L1 -9 7451 6979 5 760 394 290 76 19 chr4 22979829 22979987 -132650133 - Lx6 LINE L1 -588 6872 6706 5 760 557 269 30 7 chr4 22981420 22981555 -132648565 + B1_Mur2 SINE Alu 9 146 -3 5 760 578 14 14 0 chr4 22981721 22981792 -132648328 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 760 866 356 67 31 chr4 22982177 22982847 -132647273 - Lx8 LINE L1 -31 7442 6749 5 760 20103 126 25 3 chr4 22983075 22987129 -132642991 + L1_Mus3 LINE L1 2487 6631 -7 5 760 1208 226 23 7 chr4 22987134 22987437 -132642683 + L1_Mur2 LINE L1 2139 2446 -3431 5 760 8151 47 1 1 chr4 22987446 22988604 -132641516 - L1Md_F2 LINE L1 0 6582 5425 5 760 2492 209 8 124 chr4 22988609 22989432 -132640688 + L1_Mur2 LINE L1 2442 3169 -2708 5 760 2862 158 70 60 chr4 22989432 22990031 -132640089 + RLTR1D LTR ERV1 1 605 0 5 760 10419 178 46 16 chr4 22990031 22991546 -132638574 + L1_Mur2 LINE L1 3166 4708 -1169 5 760 519 56 0 0 chr4 22991546 22991617 -132638503 + (TAA)n Simple_repeat Simple_repeat 3 73 0 5 760 10419 178 46 16 chr4 22991617 22992354 -132637766 + L1_Mur2 LINE L1 4709 5485 -392 5 760 188 67 33 0 chr4 22992444 22992474 -132637646 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 760 345 276 168 67 chr4 22992579 22992758 -132637362 - B3A SINE B2 0 198 2 5 760 4051 262 28 16 chr4 22993357 22994451 -132635669 - Lx9 LINE L1 -222 7422 6316 5 760 2313 135 16 3 chr4 22994534 22994920 -132635200 - Lx2 LINE L1 -1 6996 6606 5 760 1978 279 82 22 chr4 22994931 22995851 -132634269 - Lx9 LINE L1 -1663 5981 4981 5 760 643 195 77 13 chr4 22995831 22995987 -132634133 - Lx9 LINE L1 -1070 4777 4612 5 760 2582 173 33 12 chr4 22995980 22996466 -132633654 - Lx3C LINE L1 -277 6699 6204 5 760 1702 263 83 109 chr4 22996466 22997431 -132632689 + RMER17B LTR ERVK 1 817 -43 5 760 545 214 0 22 chr4 22997456 22997590 -132632530 - Lx3C LINE L1 -767 6209 6079 5 760 1567 206 135 83 chr4 22997587 22998126 -132631994 - L1_Mur3 LINE L1 -1045 4835 4269 5 760 4324 56 36 0 chr4 22998130 22998680 -132631440 - L1_Mus1 LINE L1 0 6567 5998 5 760 8719 18 0 0 chr4 22998680 22999676 -132630444 - L1Md_A LINE L1 0 6582 5587 5 760 2670 62 0 14 chr4 22999641 23000000 -132630120 + L1_Mm LINE L1 5039 5392 -491 5 760 1540 11 0 0 chr4 23000000 23000180 -132629940 + L1_Mm LINE L1 5393 5572 -311 1 760 1821 39 0 0 chr4 23000177 23000406 -132629714 - L1_Mus1 LINE L1 -556 6011 5783 2 760 5968 46 16 0 chr4 23000413 23001153 -132628967 - L1Md_F3 LINE L1 -14 6570 5819 3 760 2468 165 63 0 chr4 23001153 23001781 -132628339 - L1_Mur3 LINE L1 -1608 4272 3550 4 760 420 20 0 0 chr4 23002034 23002083 -132628037 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 760 1967 200 62 34 chr4 23002572 23003417 -132626703 - L1_Mur3 LINE L1 -3994 1886 1019 4 760 1122 349 72 11 chr4 23003440 23004234 -132625886 + Lx8 LINE L1 6241 7069 -627 6 760 374 292 84 9 chr4 23004943 23005050 -132625070 + RSINE1 SINE B4 3 117 -48 7 760 574 321 44 40 chr4 23005445 23005695 -132624425 - MTEa LTR MaLR -128 251 1 8 760 436 292 19 0 chr4 23006345 23006470 -132623650 - B1F SINE Alu -6 143 16 9 760 1160 266 83 33 chr4 23006655 23007044 -132623076 + RMER1B Other Other 3 539 -527 1 760 2161 121 15 6 chr4 23007045 23007379 -132622741 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 760 5914 42 4 18 chr4 23007381 23008163 -132621957 - IAPEz-int LTR ERVK -2 6479 5709 1 760 2974 20 0 0 chr4 23008154 23008511 -132621609 - IAPEz-int LTR ERVK -2124 4357 4001 1 760 18803 75 33 20 chr4 23008509 23011239 -132618881 - IAPEz-int LTR ERVK -3707 2774 8 1 760 2161 121 15 6 chr4 23011239 23011573 -132618547 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 760 2687 174 19 30 chr4 23011587 23012114 -132618006 + RMER1B Other Other 546 1066 0 1 760 552 30 0 0 chr4 23013047 23013113 -132617007 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 760 553 221 0 0 chr4 23013200 23013313 -132616807 - Lx2B LINE L1 -186 6814 6702 1 760 2049 110 48 15 chr4 23013315 23013693 -132616427 + IAPLTR2b LTR ERVK 1 397 -14 1 760 1071 177 15 0 chr4 23013693 23013891 -132616229 - Lx2B LINE L1 -355 6645 6445 1 760 261 246 97 16 chr4 23013896 23014020 -132616100 + Lx7 LINE L1 7563 7696 0 1 760 465 105 23 11 chr4 23014250 23014337 -132615783 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 1 760 1184 101 6 0 chr4 23014337 23014515 -132615605 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 760 190 372 155 0 chr4 23014621 23014750 -132615370 - L3 LINE CR1 -33 4456 4308 1 760 270 383 42 12 chr4 23015039 23015298 -132614822 - Lx8 LINE L1 -195 7278 7012 2 760 278 397 89 27 chr4 23015584 23015843 -132614277 + L2 LINE L2 2608 2882 -537 2 760 195 42 0 0 chr4 23016941 23016965 -132613155 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 760 375 23 0 0 chr4 23017009 23017053 -132613067 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 760 2090 168 48 34 chr4 23017349 23017709 -132612411 + MTC LTR MaLR 1 375 -46 2 760 207 0 0 0 chr4 23017709 23017732 -132612388 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 760 2090 168 48 34 chr4 23017732 23017783 -132612337 + MTC LTR MaLR 376 418 -3 2 760 339 257 81 7 chr4 23017845 23017994 -132612126 - Lx9 LINE L1 -594 7050 6891 2 760 234 0 0 0 chr4 23018309 23018335 -132611785 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2 760 249 295 64 0 chr4 23018335 23018413 -132611707 - MLT1A0 LTR MaLR -38 370 288 2 760 621 217 7 14 chr4 23018476 23018616 -132611504 - MLT1A0 LTR MaLR -224 141 3 2 760 3390 20 5 10 chr4 23020584 23020982 -132609138 - MTA_Mm LTR MaLR 0 396 1 2 760 5599 47 6 1 chr4 23020982 23021701 -132608419 - MTA_Mm-int LTR MaLR 0 1098 377 2 760 36247 30 0 0 chr4 23021701 23028342 -132601778 - L1Md_T LINE L1 0 6585 1 3 760 3178 28 0 0 chr4 23028342 23028733 -132601387 - MTA_Mm-int LTR MaLR -707 391 1 2 760 554 0 0 0 chr4 23028753 23028816 -132601304 + MTB LTR MaLR 338 400 0 3 760 26 0 0 0 chr4 23028921 23028947 -132601173 + AT_rich Low_complexity Low_complexity 1 26 0 3 760 222 357 0 23 chr4 23029325 23029411 -132600709 - B4A SINE B4 -207 85 2 3 760 236 290 46 70 chr4 23030482 23030599 -132599521 + MIRb SINE MIR 65 183 -93 3 760 24 96 0 0 chr4 23030643 23030716 -132599404 + AT_rich Low_complexity Low_complexity 1 73 0 3 760 830 299 36 33 chr4 23031060 23031364 -132598756 + MLT2B1 LTR ERVL 2 306 -214 3 760 299 252 7 48 chr4 23031584 23031730 -132598390 - Lx9 LINE L1 -7 7637 7498 3 760 432 288 35 14 chr4 23031734 23031875 -132598245 + ERVL-B4-int LTR ERVL 4227 4370 -1344 3 760 658 158 58 26 chr4 23031906 23032095 -132598025 + MTC-int LTR MaLR 1058 1252 -6 3 760 1633 250 80 0 chr4 23032107 23032483 -132597637 + MTC LTR MaLR 2 407 -14 3 760 609 324 98 33 chr4 23032561 23033009 -132597111 + ERVL-B4-int LTR ERVL 4875 5362 -352 3 760 399 127 0 0 chr4 23033009 23033072 -132597048 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 760 609 324 98 33 chr4 23033072 23033111 -132597009 + ERVL-B4-int LTR ERVL 5363 5394 -320 3 760 214 256 25 13 chr4 23033115 23033194 -132596926 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 760 36 40 0 0 chr4 23033571 23033621 -132596499 + AT_rich Low_complexity Low_complexity 1 50 0 4 760 651 306 57 20 chr4 23033622 23033922 -132596198 - Lx6 LINE L1 -31 7429 7119 4 760 1293 225 67 119 chr4 23033922 23034664 -132595456 - RMER19C LTR ERVK -3 734 1 4 760 39332 6 0 0 chr4 23034733 23041309 -132588811 - L1Md_A LINE L1 0 6582 7 4 760 304 162 15 0 chr4 23041309 23041377 -132588743 - MurERV4_19-int LTR ERVK -30 5750 5682 4 760 3087 162 9 0 chr4 23041374 23041955 -132588165 - MurERV4_19-int LTR ERVK -862 4918 4333 4 760 7441 205 35 31 chr4 23041972 23043594 -132586526 - L1_Mur3 LINE L1 -802 5075 3474 4 760 186 43 0 0 chr4 23043594 23043617 -132586503 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 760 7441 205 35 31 chr4 23043617 23043811 -132586309 - L1_Mur3 LINE L1 -2404 3473 3277 4 760 1386 28 17 0 chr4 23043811 23043989 -132586131 - L1Md_F2 LINE L1 0 6582 6402 4 760 7441 205 35 31 chr4 23043989 23044199 -132585921 - L1_Mur3 LINE L1 -2601 3276 3040 4 760 6639 123 15 13 chr4 23044220 23045356 -132584764 - Lx LINE L1 -2 6652 5516 5 760 439 274 34 11 chr4 23045401 23045578 -132584542 - L1_Mur3 LINE L1 -6651 1077 897 4 760 22 35 0 0 chr4 23046210 23046239 -132583881 + AT_rich Low_complexity Low_complexity 1 29 0 5 760 627 14 0 0 chr4 23047143 23047215 -132582905 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 760 345 315 103 0 chr4 23047556 23047769 -132582351 + Lx9 LINE L1 7197 7431 -213 5 760 264 171 0 0 chr4 23047957 23047998 -132582122 - L1_Mur3 LINE L1 -972 4908 4868 5 760 665 350 102 27 chr4 23048043 23048562 -132581558 + Lx8 LINE L1 6742 7299 -397 5 760 1938 71 69 21 chr4 23048683 23048971 -132581149 + L1_Mus2 LINE L1 6263 6564 -2 5 760 256 284 35 40 chr4 23049096 23049294 -132580826 + L1M5 LINE L1 4162 4358 -1788 5 760 361 248 18 18 chr4 23049968 23050136 -132579984 - Lx9 LINE L1 0 7644 7477 5 760 225 0 0 0 chr4 23050165 23050190 -132579930 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 5 760 625 251 62 62 chr4 23050217 23050489 -132579631 - Lx9 LINE L1 -140 7504 7233 5 760 337 274 0 12 chr4 23050476 23050561 -132579559 + Lx9 LINE L1 5833 5916 -1728 6 760 2116 132 3 3 chr4 23050563 23050897 -132579223 + Lx2A1 LINE L1 6408 6741 -267 6 760 2810 55 3 0 chr4 23051169 23051514 -132578606 + ORR1A1 LTR MaLR 1 346 0 6 760 5934 132 71 34 chr4 23051514 23052920 -132577200 + ORR1A1-int LTR MaLR 1 1509 0 6 760 11929 92 26 53 chr4 23052937 23054577 -132575543 - L1VL2 LINE L1 -627 2988 1419 6 760 1165 68 0 0 chr4 23054577 23054724 -132575396 - B1_Mus2 SINE Alu 0 147 1 6 760 11929 107 41 22 chr4 23054724 23055995 -132574125 - L1VL2 LINE L1 -2197 1418 91 6 760 585 296 41 116 chr4 23056164 23056665 -132573455 + RLTR23 LTR ERV1 1 419 -11 6 760 1146 180 13 13 chr4 23057107 23057332 -132572788 + URR1B DNA MER1_type 1 225 0 6 760 251 329 60 66 chr4 23057368 23057550 -132572570 + MTEa LTR MaLR 198 378 -1 6 760 26 0 0 0 chr4 23058122 23058148 -132571972 + AT_rich Low_complexity Low_complexity 1 26 0 6 760 287 319 100 26 chr4 23058274 23058464 -132571656 + MIR SINE MIR 57 267 -1 6 760 810 73 0 0 chr4 23059515 23059625 -132570495 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 760 273 57 0 0 chr4 23059625 23059660 -132570460 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 760 189 180 0 0 chr4 23060262 23060312 -132569808 + A-rich Low_complexity Low_complexity 1 50 0 7 760 207 0 0 0 chr4 23060499 23060522 -132569598 + (A)n Simple_repeat Simple_repeat 1 23 0 7 760 448 318 55 45 chr4 23060523 23060724 -132569396 + ORR1E LTR MaLR 1 203 -156 7 760 2443 147 16 12 chr4 23061323 23061750 -132568370 - Lx3C LINE L1 -1 6975 6547 7 760 426 256 53 23 chr4 23061813 23061945 -132568175 + ORR1B1-int LTR MaLR 1365 1500 -9 7 760 4291 134 10 27 chr4 23061951 23063244 -132566876 + L1Md_F3 LINE L1 243 1483 -4400 7 760 11811 75 19 6 chr4 23063239 23065071 -132565049 + L1Md_F3 LINE L1 3186 4876 -1007 7 760 8658 26 0 2 chr4 23065074 23066777 -132563343 - L1Md_A LINE L1 0 6582 4883 7 760 8149 52 3 0 chr4 23066776 23067866 -132562254 + L1Md_F3 LINE L1 4860 5952 -632 7 760 4444 6 0 0 chr4 23067866 23068360 -132561760 + L1Md_A LINE L1 6089 6582 0 7 11 5116 45 5 21 chr4 23068360 23068884 -132561236 + L1Md_F3 LINE L1 5938 6462 -122 7 761 3066 52 2 32 chr4 23068884 23069284 -132560836 - RLTR10 LTR ERVK -2 388 1 8 761 5116 45 5 21 chr4 23069284 23069416 -132560704 + L1Md_F3 LINE L1 6463 6583 -1 7 761 514 388 48 42 chr4 23069606 23070152 -132559968 + Lx8 LINE L1 6914 7462 -11 8 761 1433 274 83 0 chr4 23070181 23070600 -132559520 - Lx9 LINE L1 -280 7364 6911 8 761 392 208 21 0 chr4 23070642 23070738 -132559382 + Lx9 LINE L1 7408 7505 -139 8 761 7451 86 6 3 chr4 23071005 23072321 -132557799 + L1_Mus1 LINE L1 5243 6565 -2 8 761 351 0 0 0 chr4 23072991 23073030 -132557090 + (T)n Simple_repeat Simple_repeat 1 39 0 8 761 450 0 0 0 chr4 23073210 23073260 -132556860 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 761 1224 40 0 0 chr4 23073862 23074012 -132556108 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 8 761 22 0 0 0 chr4 23075045 23075067 -132555053 + AT_rich Low_complexity Low_complexity 1 22 0 8 761 261 0 0 0 chr4 23076845 23076874 -132553246 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 761 23 78 0 0 chr4 23077485 23077536 -132552584 + AT_rich Low_complexity Low_complexity 1 51 0 9 761 25 75 0 0 chr4 23078047 23078100 -132552020 + AT_rich Low_complexity Low_complexity 1 53 0 9 761 3536 187 28 24 chr4 23078106 23078824 -132551296 + Lx4A LINE L1 6326 7046 -12 9 761 22 35 0 0 chr4 23079002 23079031 -132551089 + AT_rich Low_complexity Low_complexity 1 29 0 9 761 926 230 35 21 chr4 23079260 23079288 -132550832 + L1Md_F2 LINE L1 5314 5341 -901 9 761 6896 46 0 5 chr4 23079288 23080138 -132549982 + L1Md_F2 LINE L1 5737 6582 0 9 761 2101 57 0 4 chr4 23080138 23080404 -132549716 + L1Md_F2 LINE L1 5320 5605 -637 9 761 7114 81 13 16 chr4 23080407 23081394 -132548726 + L1Md_F2 LINE L1 5587 6570 -12 9 761 592 364 24 5 chr4 23081552 23081759 -132548361 + B4A SINE B4 4 214 -78 9 761 9278 71 1 4 chr4 23081774 23083649 -132546471 - L1Md_F2 LINE L1 -23 6559 4692 9 761 1209 205 5 0 chr4 23083874 23084098 -132546022 + URR1B DNA MER1_type 1 225 0 9 761 208 151 37 19 chr4 23084239 23084293 -132545827 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 761 2029 73 0 0 chr4 23085374 23085646 -132544474 - L1_Mm LINE L1 -2448 3435 3164 1 761 718 67 0 0 chr4 23085641 23085730 -132544390 + L1Md_F2 LINE L1 5498 5586 -297 1 761 7477 74 5 2 chr4 23085730 23086712 -132543408 + L1Md_F2 LINE L1 5587 6571 -11 1 761 3219 116 14 26 chr4 23087036 23087531 -132542589 + Lx3A LINE L1 6487 6975 -6 1 761 189 107 0 0 chr4 23087536 23087564 -132542556 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 761 1050 57 14 0 chr4 23087782 23087922 -132542198 + B1_Mus2 SINE Alu 6 147 0 1 761 6064 152 21 102 chr4 23088929 23089777 -132540343 + L1_Mur1 LINE L1 3686 4525 -1361 1 761 587 194 0 10 chr4 23089777 23089881 -132540239 - B1_Mus2 SINE Alu -44 103 1 1 761 6064 152 21 102 chr4 23089881 23090348 -132539772 + L1_Mur1 LINE L1 4526 4989 -897 1 761 732 335 14 10 chr4 23092946 23093154 -132536966 - B3 SINE B2 -7 209 1 1 761 34 24 0 0 chr4 23093851 23093892 -132536228 + AT_rich Low_complexity Low_complexity 1 41 0 1 761 498 125 0 0 chr4 23094043 23094131 -132535989 + L1_Mus3 LINE L1 6545 6632 -6 1 761 294 326 22 0 chr4 23094235 23094324 -132535796 - Lx7 LINE L1 -398 7298 7208 1 761 2221 253 37 33 chr4 23094397 23094944 -132535176 - Lx6 LINE L1 -169 7291 6743 1 761 4448 138 8 11 chr4 23094954 23095666 -132534454 - Lx3B LINE L1 -3 6970 6261 1 761 336 340 79 13 chr4 23096154 23096306 -132533814 - MLT1A0 LTR MaLR -25 365 204 1 761 433 283 30 121 chr4 23096391 23096556 -132533564 - RSINE1 SINE B4 -2 163 14 1 761 373 276 81 8 chr4 23096569 23096693 -132533427 - MLT1A0 LTR MaLR -232 133 1 1 761 186 43 0 0 chr4 23097043 23097066 -132533054 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 1 761 180 0 0 0 chr4 23097665 23097685 -132532435 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 761 576 42 0 0 chr4 23097729 23097800 -132532320 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 761 4047 127 21 13 chr4 23097800 23098432 -132531688 - Lx LINE L1 -15 6639 6003 1 761 1527 194 6 2 chr4 23098433 23098748 -132531372 - L1_Mm LINE L1 -549 5615 5296 1 761 5030 76 40 0 chr4 23098804 23099477 -132530643 - L1_Mus1 LINE L1 0 6567 5868 1 761 360 157 71 0 chr4 23099477 23099547 -132530573 - L1_Mur2 LINE L1 -516 5361 5287 1 761 312 318 28 0 chr4 23099592 23099710 -132530410 + L2c LINE L2 3248 3371 -4 1 761 195 42 0 0 chr4 23100329 23100353 -132529767 + (T)n Simple_repeat Simple_repeat 1 24 0 1 761 486 133 0 0 chr4 23102060 23102150 -132527970 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 761 201 313 75 68 chr4 23102430 23102591 -132527529 + MIRb SINE MIR 89 250 -18 1 761 317 209 93 0 chr4 23104766 23104852 -132525268 - L1MC4a LINE L1 -1186 6696 6603 1 761 207 0 0 0 chr4 23104852 23104875 -132525245 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 761 572 161 0 7 chr4 23104874 23105018 -132525102 + GA-rich Low_complexity Low_complexity 2 144 0 1 761 854 199 6 46 chr4 23105021 23105195 -132524925 + ORR1C1 LTR MaLR 3 169 -209 1 761 4056 262 57 59 chr4 23105175 23105979 -132524141 + ORR1C1-int LTR MaLR 111 927 -443 1 761 4390 149 30 16 chr4 23105979 23106734 -132523386 + Lx2 LINE L1 6232 6997 0 1 761 4056 262 57 59 chr4 23106734 23107192 -132522928 + ORR1C1-int LTR MaLR 928 1370 0 1 761 1688 211 32 35 chr4 23107192 23107566 -132522554 + ORR1C1 LTR MaLR 1 373 -5 1 761 381 22 0 0 chr4 23107566 23107612 -132522508 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 761 2818 83 10 114 chr4 23107642 23108227 -132521893 + RMER17D LTR ERVK 1 524 -365 1 761 528 364 12 6 chr4 23109001 23109164 -132520956 + RSINE1 SINE B4 2 165 0 1 761 280 356 0 0 chr4 23109432 23109505 -132520615 - RSINE1 SINE B4 -90 75 3 1 761 1404 161 38 15 chr4 23109928 23110193 -132519927 - Lx LINE L1 0 6654 6384 1 761 897 260 195 39 chr4 23110482 23110866 -132519254 - MT2A LTR ERVL -3 530 87 1 761 429 288 0 90 chr4 23110889 23111034 -132519086 - MT2A LTR ERVL -401 132 1 1 761 261 75 0 0 chr4 23112277 23112317 -132517803 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 761 21 0 0 0 chr4 23112638 23112659 -132517461 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 873 133 144 0 chr4 23112705 23112886 -132517234 - Lx2 LINE L1 0 6997 6791 1 761 847 260 120 8 chr4 23113112 23113379 -132516741 - MTD LTR MaLR 0 419 123 1 761 320 244 35 58 chr4 23113730 23113817 -132516303 + RMER10A LTR ERVL 12 96 -346 1 761 293 262 65 87 chr4 23113806 23113990 -132516130 + RMER10A LTR ERVL 238 417 -25 1 761 198 91 0 0 chr4 23114077 23114110 -132516010 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1 761 4360 122 14 55 chr4 23114128 23114907 -132515213 - RMER17A LTR ERVK 0 751 5 1 761 1103 67 0 0 chr4 23114907 23115041 -132515079 - B1_Mus1 SINE Alu -11 137 4 1 761 620 192 0 40 chr4 23115120 23115245 -132514875 - MTD LTR MaLR -301 120 1 1 761 736 252 47 145 chr4 23115566 23115767 -132514353 + MT2A LTR ERVL 1 178 -355 1 761 522 0 0 0 chr4 23115767 23115825 -132514295 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 761 736 274 70 130 chr4 23115825 23115905 -132514215 + MT2A LTR ERVL 179 230 -303 1 761 249 57 0 0 chr4 23115907 23115942 -132514178 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 761 1333 299 38 19 chr4 23116004 23116776 -132513344 + Lx6 LINE L1 6479 7434 -26 1 761 335 209 35 0 chr4 23117375 23117461 -132512659 + Lx9 LINE L1 7369 7457 -187 1 761 210 174 0 0 chr4 23117505 23117551 -132512569 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 761 259 258 10 40 chr4 23117570 23117671 -132512449 + Lx9 LINE L1 7525 7622 -22 1 761 418 272 40 13 chr4 23118225 23118374 -132511746 - L1_Rod LINE L1 -93 5754 5602 1 761 1339 232 97 20 chr4 23118374 23118725 -132511395 - ORR1C1 LTR MaLR 0 378 1 1 761 382 328 35 45 chr4 23118725 23118777 -132511343 - Lx7 LINE L1 -2061 5635 5589 1 761 320 299 69 55 chr4 23118798 23119018 -132511102 + MIRc SINE MIR 32 258 -10 1 761 429 54 0 0 chr4 23119695 23119751 -132510369 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 761 22 35 0 0 chr4 23119887 23119916 -132510204 + AT_rich Low_complexity Low_complexity 1 29 0 1 761 1296 306 104 8 chr4 23119945 23120481 -132509639 + Lx9 LINE L1 6362 6949 -695 1 761 2318 124 78 13 chr4 23120505 23120889 -132509231 - RLTR9E LTR ERVK 0 409 1 1 761 514 79 0 0 chr4 23120889 23120965 -132509155 - ETnERV2-int LTR ERVK 0 7406 7331 1 761 2366 173 97 6 chr4 23120965 23121459 -132508661 - RLTR13D6 LTR ERVK -363 539 1 1 761 1609 112 8 8 chr4 23121468 23121720 -132508400 - ETnERV3-int LTR ERVK -28 5780 5529 1 761 355 126 0 49 chr4 23121720 23121801 -132508319 - ETnERV3-int LTR ERVK -1172 6072 6009 1 761 12879 110 15 12 chr4 23121900 23123974 -132506146 - ETnERV2-int LTR ERVK -1181 6225 4394 1 761 3673 53 0 2 chr4 23123984 23124475 -132505645 + L1_Mm LINE L1 4099 4588 -1295 1 761 24155 27 2 9 chr4 23124464 23128303 -132501817 + L1Md_A LINE L1 432 4234 -1649 1 761 39336 6 3 0 chr4 23128317 23134874 -132495246 - L1Md_A LINE L1 0 6582 1 1 761 11155 20 3 0 chr4 23134874 23136232 -132493888 + L1Md_A LINE L1 4223 5584 -299 1 761 8235 39 2 0 chr4 23136234 23137227 -132492893 + L1Md_A LINE L1 5587 6581 -1 1 761 183 42 0 0 chr4 23137232 23137256 -132492864 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 761 7522 62 3 1 chr4 23137274 23138286 -132491834 + L1Md_F2 LINE L1 4571 5584 -299 1 761 8024 40 15 2 chr4 23138288 23139267 -132490853 + L1Md_F2 LINE L1 5587 6578 -4 1 761 1667 232 21 14 chr4 23139268 23139878 -132490242 - ETnERV2-int LTR ERVK -3042 4364 4083 1 761 1084 323 40 37 chr4 23139967 23140893 -132489227 - ETnERV2-int LTR ERVK -5048 3169 1838 1 761 7160 227 13 45 chr4 23140971 23142859 -132487261 - ETnERV-int LTR ERVK -3857 3387 2 1 761 23361 92 20 14 chr4 23142861 23147221 -132482899 + L1_Mus1 LINE L1 632 5004 -879 1 761 5686 98 45 21 chr4 23147215 23148125 -132481995 + L1_Mus1 LINE L1 5636 6567 0 1 761 10809 149 93 13 chr4 23148137 23150278 -132479842 + Lx4A LINE L1 3472 5763 -114 1 761 423 0 0 0 chr4 23150278 23150325 -132479795 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1 761 10809 158 45 15 chr4 23150325 23151506 -132478614 + Lx4A LINE L1 5764 7053 -5 1 761 369 261 0 0 chr4 23151522 23151637 -132478483 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 761 1485 121 16 8 chr4 23151693 23151944 -132478176 + L1_Mus3 LINE L1 6386 6638 0 1 761 991 249 36 3 chr4 23154161 23154491 -132475629 + L1_Mur3 LINE L1 859 1199 -6529 1 761 294 164 14 14 chr4 23154491 23154565 -132475555 + L1VL4 LINE L1 134 199 -6103 1 761 2065 215 47 6 chr4 23154601 23155069 -132475051 + RMER1A Other Other 544 1030 0 1 761 1156 124 100 8 chr4 23155069 23155329 -132474791 + L1_Mur3 LINE L1 3178 3461 -2419 1 761 1013 55 0 0 chr4 23155329 23155457 -132474663 + B1_Mus1 SINE Alu 21 148 0 1 761 312 26 86 49 chr4 23155459 23155540 -132474580 + A-rich Low_complexity Low_complexity 2 85 0 1 761 252 0 0 0 chr4 23155580 23155608 -132474512 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 761 303 125 0 97 chr4 23155609 23155671 -132474449 + L1_Mur3 LINE L1 3485 3540 -2340 1 761 5359 184 9 64 chr4 23155669 23157052 -132473068 + L1_Mur3 LINE L1 3725 5031 -849 1 761 28 0 0 0 chr4 23157668 23157696 -132472424 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 693 164 13 20 chr4 23157696 23157845 -132472275 + L1_Mur3 LINE L1 5103 5250 -630 1 761 678 218 47 21 chr4 23157854 23158024 -132472096 + Lx6 LINE L1 6699 6870 -590 1 761 1017 101 0 0 chr4 23158024 23158203 -132471917 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 761 678 218 47 21 chr4 23158203 23158224 -132471896 + Lx6 LINE L1 6871 6895 -565 1 761 359 51 0 92 chr4 23158224 23158311 -132471809 + (CAGAGA)n Simple_repeat Simple_repeat 4 82 0 1 761 1510 315 25 10 chr4 23158317 23158907 -132471213 + Lx6 LINE L1 6841 7439 -21 1 761 230 216 36 138 chr4 23158987 23159086 -132471034 - MIRc SINE MIR -115 153 65 1 761 237 287 88 44 chr4 23159108 23159221 -132470899 - MIR SINE MIR -45 217 100 1 761 23 68 0 0 chr4 23159407 23159451 -132470669 + AT_rich Low_complexity Low_complexity 1 44 0 1 761 3689 84 4 4 chr4 23159635 23160197 -132469923 - L1_Mur1 LINE L1 -2102 3784 3223 1 761 555 16 0 0 chr4 23160513 23160577 -132469543 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1 761 22 0 0 0 chr4 23160581 23160603 -132469517 + AT_rich Low_complexity Low_complexity 1 22 0 1 761 717 293 101 56 chr4 23160885 23161370 -132468750 + Lx9 LINE L1 5594 6100 -1544 1 761 324 283 40 0 chr4 23161421 23161520 -132468600 + Lx9 LINE L1 6327 6429 -1215 1 761 614 290 32 5 chr4 23162229 23162416 -132467704 - MIRb SINE MIR -1 267 76 1 761 243 79 0 0 chr4 23162996 23163034 -132467086 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1 761 203 378 59 0 chr4 23163247 23163382 -132466738 + L2a LINE L2 3276 3418 -8 1 761 22 0 0 0 chr4 23164976 23164998 -132465122 + AT_rich Low_complexity Low_complexity 1 22 0 1 761 291 391 79 14 chr4 23165040 23165255 -132464865 - MLT1I LTR MaLR -23 388 160 1 761 210 107 0 0 chr4 23165383 23165411 -132464709 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 1 761 511 147 10 10 chr4 23165411 23165514 -132464606 + CT-rich Low_complexity Low_complexity 1 103 0 1 761 255 103 0 0 chr4 23165585 23165624 -132464496 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 761 275 291 12 0 chr4 23166562 23166648 -132463472 + CT-rich Low_complexity Low_complexity 3 89 0 1 761 2477 130 56 52 chr4 23167420 23167933 -132462187 + Lx2 LINE L1 6088 6641 -356 1 761 1378 119 5 0 chr4 23167935 23168145 -132461975 + Lx2 LINE L1 6775 6985 -12 1 761 3254 125 7 46 chr4 23168174 23168736 -132461384 - L1_Mus4 LINE L1 -8 6628 6089 1 761 830 172 12 24 chr4 23168852 23169019 -132461101 - URR1A DNA MER1_type 0 226 62 2 761 421 242 61 136 chr4 23169381 23169711 -132460409 - L1MA9 LINE L1 -9 6303 5999 2 761 335 41 20 0 chr4 23170179 23170228 -132459892 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2 761 26 0 0 0 chr4 23170346 23170372 -132459748 + AT_rich Low_complexity Low_complexity 1 26 0 2 761 8084 189 28 6 chr4 23170483 23173194 -132456926 - Lx2B LINE L1 0 7000 4232 2 761 250 389 25 37 chr4 23173536 23173699 -132456421 - MER20 DNA MER1_type -25 194 34 2 761 573 15 0 0 chr4 23173701 23173767 -132456353 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 761 27 49 0 0 chr4 23174690 23174731 -132455389 + AT_rich Low_complexity Low_complexity 1 41 0 2 761 189 0 0 0 chr4 23175372 23175393 -132454727 + (T)n Simple_repeat Simple_repeat 1 21 0 2 761 237 313 94 17 chr4 23175460 23175577 -132454543 + MIRb SINE MIR 86 211 -57 2 761 907 231 16 11 chr4 23175992 23176176 -132453944 + ORR1D2 LTR MaLR 5 189 -181 2 761 5001 55 12 9 chr4 23176177 23176833 -132453287 - L1Md_F2 LINE L1 -12 6570 5913 2 761 752 58 29 0 chr4 23176833 23176936 -132453184 + L1Md_F2 LINE L1 5846 5951 -631 2 761 699 210 94 18 chr4 23176936 23177106 -132453014 + ORR1D2 LTR MaLR 180 362 -8 2 761 1401 260 41 64 chr4 23177333 23177772 -132452348 + ORR1D2-int LTR MaLR 924 1352 -18 2 761 1202 167 7 74 chr4 23177792 23178077 -132452043 - L1_Mur3 LINE L1 -3563 2314 2049 2 761 651 201 0 0 chr4 23178099 23178359 -132451761 + GA-rich Low_complexity Low_complexity 1 260 0 2 761 3004 186 86 22 chr4 23178405 23179324 -132450796 - L1_Mur3 LINE L1 -3880 1997 1026 2 761 456 35 0 0 chr4 23179324 23179382 -132450738 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2 761 1031 255 40 33 chr4 23179382 23179477 -132450643 - L1_Mur3 LINE L1 -6703 1025 856 2 761 6131 206 63 15 chr4 23179602 23181123 -132448997 - L1_Mur3 LINE L1 -593 5287 3694 2 761 13834 181 85 48 chr4 23181121 23183809 -132446311 - L1_Mur2 LINE L1 -1074 4803 2030 2 761 198 0 0 0 chr4 23183809 23183831 -132446289 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 761 13834 181 85 48 chr4 23183831 23184332 -132445788 - L1_Mur2 LINE L1 -3848 2029 1512 2 761 708 12 0 0 chr4 23184332 23184413 -132445707 + (TTC)n Simple_repeat Simple_repeat 1 81 0 2 761 13834 181 85 48 chr4 23184413 23184611 -132445509 - L1_Mur2 LINE L1 -4366 1511 1289 2 761 5353 181 46 34 chr4 23184614 23185211 -132444909 - RLTR25A LTR ERVK -3 1100 515 2 761 189 74 0 0 chr4 23185211 23185238 -132444882 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 761 5353 181 46 34 chr4 23185238 23185727 -132444393 - RLTR25A LTR ERVK -589 514 2 2 761 1332 192 39 75 chr4 23185729 23185916 -132444204 - L1_Mur2 LINE L1 -5794 1292 1128 2 761 3847 57 0 0 chr4 23185916 23186390 -132443730 - L1_Mus1 LINE L1 0 6567 6094 2 761 1332 192 39 75 chr4 23186390 23186614 -132443506 - L1_Mur2 LINE L1 -5959 1127 896 2 761 1916 247 73 37 chr4 23186921 23187685 -132442435 - L1_Mur3 LINE L1 -1537 4343 3552 2 761 2037 106 250 3 chr4 23187692 23188052 -132442068 + RLTR44B LTR ERVK 1 449 0 2 761 879 131 48 0 chr4 23188052 23188197 -132441923 + RLTR44-int LTR ERVK 1 152 -2660 2 761 6487 189 35 33 chr4 23188194 23190759 -132439361 + RLTR44-int LTR ERVK 662 2812 0 2 761 2457 127 132 0 chr4 23190761 23191156 -132438964 + RLTR44B LTR ERVK 3 449 0 2 761 3286 240 122 25 chr4 23191158 23192416 -132437704 - L1_Mur3 LINE L1 -2332 3548 2169 2 761 1085 151 85 0 chr4 23192437 23192649 -132437471 - Lx5 LINE L1 -1038 6012 5783 2 761 7375 117 12 18 chr4 23192645 23194014 -132436106 - Lx LINE L1 0 6654 5288 2 761 1671 209 70 0 chr4 23194027 23194396 -132435724 - Lx2A1 LINE L1 0 7008 6614 2 761 712 330 81 53 chr4 23194606 23194982 -132435138 + MTD-int LTR MaLR 676 1079 -179 2 761 615 105 44 0 chr4 23194982 23195096 -132435024 + Lx2A LINE L1 6887 7005 -3 2 761 712 330 81 53 chr4 23195096 23195286 -132434834 + MTD-int LTR MaLR 1080 1258 0 2 761 1129 305 57 13 chr4 23195288 23195676 -132434444 + MTD LTR MaLR 3 407 -12 2 761 242 294 118 16 chr4 23196013 23196200 -132433920 + Arthur1 DNA Tip100 3645 3850 -97 2 761 4104 138 17 11 chr4 23196502 23197226 -132432894 + L1_Mur1 LINE L1 3864 4591 -1295 2 761 289 322 24 47 chr4 23197807 23197934 -132432186 - MLT1A LTR MaLR -41 333 210 2 761 243 0 0 0 chr4 23198227 23198254 -132431866 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2 761 240 217 16 32 chr4 23199556 23199618 -132430502 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 2 762 486 0 0 0 chr4 23200288 23200342 -132429778 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 2 762 1124 109 6 0 chr4 23200342 23200516 -132429604 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 2 762 643 61 10 0 chr4 23201035 23201133 -132428987 - L1Md_F2 LINE L1 0 6582 6484 2 762 1600 22 0 0 chr4 23201133 23201318 -132428802 + L1Md_F2 LINE L1 6170 6354 -228 2 762 326 300 221 48 chr4 23202136 23202160 -132427960 + MLT1A0 LTR MaLR 2 21 -344 2 762 4503 131 18 22 chr4 23202160 23202900 -132427220 + RMER19A LTR ERVK 1 737 0 2 762 326 300 221 48 chr4 23202900 23203169 -132426951 + MLT1A0 LTR MaLR 22 346 -19 2 762 1267 96 21 0 chr4 23203788 23203975 -132426145 + B2_Mm1t SINE B2 2 192 -1 2 762 470 325 124 20 chr4 23204016 23204362 -132425758 - L1M5 LINE L1 -480 5644 5263 2 762 276 270 14 0 chr4 23204639 23204713 -132425407 + MADE2 DNA Mariner 2 76 -4 2 762 411 317 156 1 chr4 23205042 23205196 -132424924 - B3A SINE B2 -33 183 11 2 762 1114 84 0 0 chr4 23205196 23205338 -132424782 + B1_Mus1 SINE Alu 2 143 -5 2 762 332 120 0 46 chr4 23205349 23205436 -132424684 + A-rich Low_complexity Low_complexity 1 83 0 2 762 978 276 91 47 chr4 23205520 23205926 -132424194 + RMER2 LTR ERV1 1 424 -143 2 762 207 390 25 8 chr4 23208779 23208898 -132421222 - L2a LINE L2 0 3426 3306 2 762 389 311 58 13 chr4 23208974 23209078 -132421042 + L1MA4 LINE L1 5675 5781 -519 2 762 207 0 0 0 chr4 23209078 23209101 -132421019 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 762 389 311 58 13 chr4 23209101 23209221 -132420899 + L1MA4 LINE L1 5782 5909 -391 2 762 426 20 0 0 chr4 23209484 23209535 -132420585 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 762 183 371 111 42 chr4 23209702 23210009 -132420111 - L2a LINE L2 -471 2948 2621 2 762 2057 128 0 0 chr4 23210047 23210344 -132419776 - L1_Mm LINE L1 -171 5712 5416 2 762 2701 88 21 33 chr4 23210345 23210770 -132419350 + Lx LINE L1 6228 6647 -7 2 762 180 0 0 0 chr4 23210862 23210882 -132419238 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 762 193 351 83 15 chr4 23210888 23211021 -132419099 - L2a LINE L2 -1001 2418 2277 2 762 27 0 0 0 chr4 23211426 23211453 -132418667 + AT_rich Low_complexity Low_complexity 1 27 0 2 762 1109 88 0 0 chr4 23211467 23211615 -132418505 - B1_Mus1 SINE Alu 0 148 1 2 762 217 68 22 22 chr4 23211876 23211921 -132418199 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2 762 312 278 0 0 chr4 23213044 23213116 -132417004 + PB1D10 SINE Alu 1 72 -45 2 762 1071 265 71 25 chr4 23213609 23214057 -132416063 - Lx9 LINE L1 0 7644 7176 2 762 591 36 0 12 chr4 23214138 23214222 -132415898 + L1Md_T LINE L1 6499 6581 -1 2 762 21 57 0 0 chr4 23214584 23214619 -132415501 + AT_rich Low_complexity Low_complexity 1 35 0 2 762 1523 164 14 14 chr4 23214766 23215044 -132415076 - RLTR15 LTR ERVK -69 290 13 2 762 35793 35 1 0 chr4 23215742 23221865 -132408255 + L1Md_Gf LINE L1 1 5631 -255 2 762 3427 28 2 0 chr4 23223353 23223748 -132406372 - MTA_Mm LTR MaLR 0 396 1 2 762 2185 204 41 28 chr4 23224004 23224113 -132406007 - Lx5 LINE L1 -986 6064 5956 2 762 369 0 0 0 chr4 23224113 23224154 -132405966 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 762 2185 204 41 28 chr4 23224154 23224512 -132405608 - Lx5 LINE L1 -1095 5955 5591 2 762 1202 274 76 0 chr4 23224531 23224899 -132405221 + Lx5 LINE L1 6655 7050 0 2 762 288 256 77 0 chr4 23224943 23225021 -132405099 + Lx7 LINE L1 7613 7696 0 2 762 309 109 0 0 chr4 23225282 23225328 -132404792 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 762 378 61 0 0 chr4 23225568 23225617 -132404503 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 762 207 0 0 0 chr4 23226231 23226254 -132403866 + (A)n Simple_repeat Simple_repeat 1 23 0 2 762 198 118 0 0 chr4 23226300 23226334 -132403786 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 762 210 37 0 0 chr4 23226336 23226363 -132403757 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 762 378 0 0 0 chr4 23226474 23226516 -132403604 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 762 251 93 23 0 chr4 23226534 23226577 -132403543 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 762 278 187 11 32 chr4 23227701 23227795 -132402325 + GA-rich Low_complexity Low_complexity 2 93 0 2 762 316 349 87 52 chr4 23228533 23228820 -132401300 - L2 LINE L2 -510 2909 2613 2 762 330 26 0 0 chr4 23229227 23229266 -132400854 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 762 289 259 12 0 chr4 23229270 23229355 -132400765 + GA-rich Low_complexity Low_complexity 1 86 0 2 762 308 297 32 32 chr4 23229376 23229470 -132400650 + RSINE1 SINE B4 59 152 -13 2 762 447 268 39 0 chr4 23229608 23229735 -132400385 - B3 SINE B2 -4 212 81 2 762 230 345 145 8 chr4 23229716 23229833 -132400287 - MER5A DNA MER1_type -56 133 1 2 762 207 359 14 40 chr4 23230110 23230258 -132399862 + L2b LINE L2 2337 2480 -939 2 762 555 116 27 0 chr4 23230264 23230376 -132399744 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 2 762 208 40 100 0 chr4 23230685 23230735 -132399385 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 2 762 197 397 84 21 chr4 23230925 23231164 -132398956 + L2b LINE L2 2923 3176 -199 2 762 376 199 155 47 chr4 23231355 23231503 -132398617 - MER5A1 DNA MER1_type -2 164 1 2 762 330 268 112 43 chr4 23231596 23231783 -132398337 - L2c LINE L2 0 3387 3188 2 762 234 0 0 0 chr4 23232450 23232476 -132397644 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 762 24 53 0 0 chr4 23232787 23232825 -132397295 + AT_rich Low_complexity Low_complexity 1 38 0 2 762 414 0 0 0 chr4 23233354 23233400 -132396720 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 762 321 125 0 0 chr4 23234835 23234891 -132395229 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 762 201 94 0 0 chr4 23235189 23235221 -132394899 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 762 23 33 0 0 chr4 23236013 23236043 -132394077 + AT_rich Low_complexity Low_complexity 1 30 0 2 762 492 316 46 0 chr4 23238369 23238521 -132391599 - Tigger16a DNA Tigger -1 932 774 2 762 486 0 0 0 chr4 23238924 23238978 -132391142 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 762 247 310 119 31 chr4 23239265 23239425 -132390695 - MIRb SINE MIR -17 251 78 2 762 189 0 0 0 chr4 23240511 23240532 -132389588 + (TTATG)n Simple_repeat Simple_repeat 2 22 0 2 762 2167 152 13 0 chr4 23242971 23243345 -132386775 - ORR1A2-int LTR MaLR -431 1361 983 2 762 2041 110 55 0 chr4 23243360 23243670 -132386450 - ORR1A2 LTR MaLR 0 327 1 2 762 4991 177 52 82 chr4 23243671 23243694 -132386426 - L1_Mur2 LINE L1 -2002 3875 3850 2 762 228 35 0 0 chr4 23243694 23243723 -132386397 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 762 4991 177 52 82 chr4 23243723 23244469 -132385651 - L1_Mur2 LINE L1 -2028 3849 3170 2 762 478 0 32 0 chr4 23244469 23244531 -132385589 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 762 4991 177 52 82 chr4 23244531 23245060 -132385060 - L1_Mur2 LINE L1 -2708 3169 2615 2 762 6565 80 8 1 chr4 23245061 23245928 -132384192 + L1_Mus1 LINE L1 5695 6567 0 3 762 5960 197 49 13 chr4 23245931 23246178 -132383942 - L1_Mur2 LINE L1 -3250 2627 2372 2 762 1698 203 32 80 chr4 23246178 23246590 -132383530 - ORR1B1 LTR MaLR -1 393 2 3 762 5960 197 49 13 chr4 23246590 23246912 -132383208 - L1_Mur2 LINE L1 -3506 2371 2052 2 762 405 0 0 0 chr4 23246912 23246957 -132383163 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 762 5960 202 113 11 chr4 23246957 23247952 -132382168 - L1_Mur2 LINE L1 -3826 2051 940 2 762 5444 144 78 1 chr4 23247975 23248967 -132381153 - Lx3C LINE L1 -7 6969 5902 3 762 306 125 0 0 chr4 23249259 23249307 -132380813 + (TTC)n Simple_repeat Simple_repeat 3 50 0 3 762 1164 62 7 0 chr4 23249328 23249474 -132380646 - B1_Mus1 SINE Alu 0 148 2 3 762 24 53 0 0 chr4 23250059 23250097 -132380023 + AT_rich Low_complexity Low_complexity 1 38 0 3 762 27 0 0 0 chr4 23251234 23251261 -132378859 + AT_rich Low_complexity Low_complexity 1 27 0 3 762 40 59 0 0 chr4 23251509 23251577 -132378543 + AT_rich Low_complexity Low_complexity 1 68 0 3 762 2677 95 15 20 chr4 23251920 23252316 -132377804 + L1_Mus3 LINE L1 6233 6626 -12 3 762 337 373 91 55 chr4 23252321 23252792 -132377328 - Arthur1 DNA Tip100 -3186 761 274 3 762 9852 236 78 32 chr4 23252813 23256338 -132373782 - Lx6 LINE L1 -143 6907 3264 3 762 249 83 0 0 chr4 23256338 23256374 -132373746 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 762 9852 212 79 26 chr4 23256374 23256650 -132373470 - Lx6 LINE L1 -2617 3263 2971 3 762 441 0 0 0 chr4 23256656 23256705 -132373415 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 3 762 3179 174 61 5 chr4 23256707 23257301 -132372819 - Lx4A LINE L1 -3 7055 6429 3 762 1699 150 0 7 chr4 23257302 23257577 -132372543 + L1_Mur1 LINE L1 5349 5621 -265 3 762 435 209 17 34 chr4 23257577 23257696 -132372424 - Lx6 LINE L1 -3731 2146 2030 3 762 2424 144 15 0 chr4 23257737 23258146 -132371974 - L1_Mur2 LINE L1 -1216 4661 4247 3 762 1366 209 40 34 chr4 23258162 23258607 -132371513 - Lx6 LINE L1 -4230 1650 1203 3 762 261 0 0 0 chr4 23258607 23258636 -132371484 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 762 928 238 19 124 chr4 23258636 23258981 -132371139 - Lx6 LINE L1 -6526 1202 904 3 762 444 114 16 58 chr4 23259238 23259359 -132370761 + GA-rich Low_complexity Low_complexity 1 116 0 3 762 298 226 0 0 chr4 23259864 23259917 -132370203 + MamSINE1 SINE tRNA 238 290 0 3 762 341 43 21 0 chr4 23261757 23261804 -132368316 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 3 762 250 379 3 16 chr4 23261809 23261954 -132368166 - MLT2B1 LTR ERVL -80 487 346 3 762 478 266 14 0 chr4 23262018 23262161 -132367959 + Lx6 LINE L1 7314 7458 -2 3 762 783 368 20 10 chr4 23262176 23262481 -132367639 - MLT2B1 LTR ERVL -209 311 4 3 762 532 356 59 14 chr4 23262953 23263172 -132366948 + MamSINE1 SINE tRNA 2 230 -60 3 762 2354 64 0 13 chr4 23264599 23264916 -132365204 + L1Md_F2 LINE L1 6266 6578 -4 3 762 297 0 0 0 chr4 23267422 23267455 -132362665 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 762 643 160 12 71 chr4 23269788 23269956 -132360164 - Lx4A LINE L1 0 7058 6901 3 762 27 0 0 0 chr4 23270023 23270050 -132360070 + AT_rich Low_complexity Low_complexity 1 27 0 3 762 331 289 23 15 chr4 23270455 23270585 -132359535 + MER96B DNA hAT 6 136 -281 3 762 23 86 0 0 chr4 23271067 23271125 -132358995 + AT_rich Low_complexity Low_complexity 1 58 0 3 762 239 309 43 14 chr4 23271216 23271285 -132358835 + ID SINE ID 14 84 -140 3 762 22 35 0 0 chr4 23271291 23271320 -132358800 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 375 297 37 43 chr4 23271765 23271927 -132358193 + MLT1A1 LTR MaLR 235 395 -13 3 762 21 0 0 0 chr4 23272102 23272123 -132357997 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 993 184 34 24 chr4 23272234 23272440 -132357680 + RMER4A LTR ERVK 249 456 -10 3 762 21 57 0 0 chr4 23273026 23273061 -132357059 + AT_rich Low_complexity Low_complexity 1 35 0 3 762 209 339 0 0 chr4 23273537 23273602 -132356518 + CT-rich Low_complexity Low_complexity 3 67 0 3 762 189 175 0 0 chr4 23274201 23274241 -132355879 + (TATG)n Simple_repeat Simple_repeat 1 40 0 3 762 32 26 0 0 chr4 23275084 23275123 -132354997 + AT_rich Low_complexity Low_complexity 1 39 0 3 762 369 0 0 0 chr4 23275154 23275195 -132354925 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 762 21 36 0 0 chr4 23275790 23275818 -132354302 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 662 221 7 0 chr4 23275886 23276022 -132354098 + URR1A DNA MER1_type 47 183 -43 3 762 466 314 20 50 chr4 23276145 23276346 -132353774 + B3A SINE B2 1 195 -3 3 762 754 218 171 0 chr4 23277416 23277609 -132352511 + URR1A DNA MER1_type 1 226 0 3 762 1108 331 70 13 chr4 23277948 23278579 -132351541 + Lx8 LINE L1 6149 6815 -658 3 762 764 309 94 24 chr4 23278579 23278972 -132351148 + MT2A LTR ERVL 1 540 -61 3 762 642 26 0 0 chr4 23278972 23279048 -132351072 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 762 470 374 39 25 chr4 23279088 23279529 -132350591 + Lx8 LINE L1 6828 7274 -199 3 762 3823 212 24 8 chr4 23279733 23280569 -132349551 - Lx2B LINE L1 -398 6602 5754 3 762 1080 266 27 6 chr4 23280568 23280882 -132349238 + Lx2B LINE L1 6368 6906 -70 3 762 22 0 0 0 chr4 23281199 23281221 -132348899 + AT_rich Low_complexity Low_complexity 1 22 0 3 762 9941 136 25 17 chr4 23281343 23283679 -132346441 - Lx3A LINE L1 -37 6944 4589 3 762 1064 72 0 0 chr4 23283679 23283817 -132346303 + B1_Mus1 SINE Alu 2 139 -9 3 762 304 40 20 20 chr4 23283817 23283868 -132346252 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 762 9941 129 20 25 chr4 23283868 23284281 -132345839 - Lx3A LINE L1 -1298 4588 4170 3 762 3802 190 62 4 chr4 23284289 23285020 -132345100 + L1VL2 LINE L1 63 835 -5500 3 762 6968 62 2 1 chr4 23285078 23285955 -132344165 + L1_Mus1 LINE L1 5690 6567 0 3 762 21 36 0 0 chr4 23285955 23285983 -132344137 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 5161 112 70 11 chr4 23285983 23286993 -132343127 + L1VL4 LINE L1 753 1832 -1727 3 762 4157 156 60 88 chr4 23286989 23287569 -132342551 + L1_Mus3 LINE L1 414 975 -5663 3 762 1231 54 0 0 chr4 23287569 23287716 -132342404 + B1_Mus2 SINE Alu 1 147 0 3 762 17858 142 11 22 chr4 23287716 23289663 -132340457 + L1_Mus3 LINE L1 976 2889 -2994 3 762 2409 86 61 0 chr4 23289663 23289989 -132340131 + ORR1A1 LTR MaLR 1 346 0 3 762 13053 69 16 5 chr4 23289989 23291760 -132338360 + ORR1A1-int LTR MaLR 1 1792 0 3 762 2173 69 76 99 chr4 23291760 23292114 -132338006 + ORR1A1 LTR MaLR 1 346 0 3 762 17858 140 4 13 chr4 23292114 23293492 -132336628 + L1_Mus3 LINE L1 2890 4264 -1619 3 762 3073 32 5 5 chr4 23293492 23293865 -132336255 + L1Md_F2 LINE L1 6198 6570 -12 3 762 1478 113 5 0 chr4 23293865 23294087 -132336033 + L1_Mus3 LINE L1 5267 5489 -394 3 762 4262 146 20 75 chr4 23294102 23294971 -132335149 + RMER17A2 LTR ERVK 73 893 -13 3 762 7434 98 9 5 chr4 23294988 23296125 -132333995 + L1_Mus3 LINE L1 5484 6637 -1 3 762 16674 124 38 13 chr4 23296138 23296189 -132333931 - Lx3A LINE L1 -1707 4179 4133 3 762 647 122 16 8 chr4 23296189 23296313 -132333807 - L1_Mus3 LINE L1 -5 6633 6509 3 762 16674 125 37 17 chr4 23296313 23299285 -132330835 - Lx3A LINE L1 -1754 4132 1089 3 762 3333 35 2 0 chr4 23299285 23299680 -132330440 + MTA_Mm LTR MaLR 1 396 0 3 762 4473 148 14 109 chr4 23299680 23300416 -132329704 - Lx3A LINE L1 -5896 1088 442 3 762 1410 180 94 18 chr4 23301044 23301097 -132329023 + RMER6C LTR ERVK 3 55 -635 3 762 234 0 47 47 chr4 23301097 23301140 -132328980 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 762 1410 180 94 18 chr4 23301140 23301390 -132328730 + RMER6C LTR ERVK 56 333 -357 3 762 868 88 0 0 chr4 23301390 23301697 -132328423 + L1_Mus2 LINE L1 6429 6566 0 3 762 1410 186 68 44 chr4 23301697 23301750 -132328370 + RMER6C LTR ERVK 321 361 -395 3 762 12757 11 0 0 chr4 23301760 23303899 -132326221 - L1Md_A LINE L1 0 6582 4444 3 762 936 191 42 3 chr4 23303899 23304134 -132325986 + RMER6C LTR ERVK 378 655 -35 3 762 537 274 7 7 chr4 23304315 23304451 -132325669 + B3 SINE B2 78 213 -3 3 762 4808 34 3 7 chr4 23304453 23305039 -132325081 + L1Md_F2 LINE L1 5999 6582 0 3 762 24 0 0 0 chr4 23305126 23305150 -132324970 + AT_rich Low_complexity Low_complexity 1 24 0 3 762 24 0 0 0 chr4 23305382 23305406 -132324714 + AT_rich Low_complexity Low_complexity 1 24 0 3 762 208 191 21 0 chr4 23305522 23305569 -132324551 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 762 42 0 0 0 chr4 23306143 23306185 -132323935 + AT_rich Low_complexity Low_complexity 1 42 0 3 762 2536 306 122 43 chr4 23306663 23306997 -132323123 + Lx7 LINE L1 5784 6200 -1496 3 762 207 0 0 0 chr4 23306997 23307020 -132323100 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 762 390 91 39 0 chr4 23307020 23307096 -132323024 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 762 2536 306 122 43 chr4 23307096 23308167 -132321953 + Lx7 LINE L1 6201 7300 -396 3 762 32940 93 13 4 chr4 23308969 23315090 -132315030 - L1Md_F2 LINE L1 -1 6581 403 3 762 21 0 0 0 chr4 23315558 23315579 -132314541 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 580 268 88 29 chr4 23315582 23315786 -132314334 - B3 SINE B2 0 216 1 3 762 22 35 0 0 chr4 23316399 23316428 -132313692 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 1127 307 21 9 chr4 23319864 23320202 -132309918 + Lx8 LINE L1 6781 7122 -351 3 762 701 260 0 13 chr4 23320259 23320415 -132309705 - MTE-int LTR MaLR -445 1135 982 3 762 414 304 56 46 chr4 23321070 23321356 -132308764 - L1MB1 LINE L1 -361 5939 5646 3 762 225 226 57 0 chr4 23321573 23321626 -132308494 - L1MD LINE L1 -910 5449 5394 3 762 26 0 0 0 chr4 23321674 23321700 -132308420 + AT_rich Low_complexity Low_complexity 1 26 0 3 762 577 312 0 0 chr4 23322051 23322192 -132307928 - Lx6 LINE L1 -92 7368 7228 3 762 653 295 75 41 chr4 23322185 23322746 -132307374 + Lx6 LINE L1 6234 6832 -628 3 762 21 0 0 0 chr4 23324226 23324247 -132305873 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 368 188 29 19 chr4 23325021 23325124 -132304996 - Lx9 LINE L1 -145 7499 7396 3 762 3921 234 43 27 chr4 23325124 23326125 -132303995 + Lx9 LINE L1 6405 7421 -223 3 762 573 273 59 13 chr4 23326926 23327041 -132303079 + RSINE1 SINE B4 7 126 -39 3 762 1073 50 7 0 chr4 23327041 23327181 -132302939 + (TA)n Simple_repeat Simple_repeat 1 141 0 3 762 573 273 59 13 chr4 23327181 23327217 -132302903 + RSINE1 SINE B4 127 165 0 3 762 190 0 67 0 chr4 23328470 23328500 -132301620 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 3 762 244 235 226 0 chr4 23328573 23328688 -132301432 + MER53 DNA hAT 24 164 -29 3 762 324 0 0 0 chr4 23328705 23328741 -132301379 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 762 225 0 0 0 chr4 23329114 23329139 -132300981 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 762 464 254 42 42 chr4 23329445 23329589 -132300531 - RLTR14 LTR ERV1 -15 367 224 3 762 3827 60 2 2 chr4 23329807 23330292 -132299828 + L1_Mus1 LINE L1 6083 6567 0 3 763 216 0 0 0 chr4 23331082 23331106 -132299014 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 763 2100 204 87 5 chr4 23331706 23332268 -132297852 - L1_Mur3 LINE L1 -3715 2165 1558 3 763 435 204 60 20 chr4 23332270 23332407 -132297713 + URR1A DNA MER1_type 1 172 -54 4 763 555 212 0 0 chr4 23332407 23332525 -132297595 + L1_Mur2 LINE L1 5115 5232 -645 4 763 1090 178 44 8 chr4 23332534 23332904 -132297216 - L1_Mur3 LINE L1 -4395 1485 1094 3 763 333 358 106 11 chr4 23333008 23333197 -132296923 - B3 SINE B2 -1 215 9 4 763 182 91 30 0 chr4 23333351 23333384 -132296736 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 763 297 0 0 0 chr4 23333385 23333418 -132296702 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 763 435 230 0 0 chr4 23334893 23334993 -132295127 + Lx9 LINE L1 6972 7071 -573 4 763 586 242 44 123 chr4 23335537 23335717 -132294403 + ORR1C1 LTR MaLR 1 166 -212 4 763 551 40 14 0 chr4 23335717 23335791 -132294329 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 763 586 242 44 123 chr4 23335791 23335813 -132294307 + ORR1C1 LTR MaLR 167 187 -191 4 763 848 111 26 0 chr4 23335815 23335968 -132294152 + (TC)n Simple_repeat Simple_repeat 1 157 0 4 763 788 213 66 66 chr4 23335968 23336179 -132293941 + ORR1C1 LTR MaLR 166 376 -2 4 763 190 0 32 32 chr4 23336253 23336284 -132293836 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4 763 575 196 7 0 chr4 23336482 23336620 -132293500 + (TG)n Simple_repeat Simple_repeat 1 139 0 4 763 209 143 17 51 chr4 23336726 23336785 -132293335 + T-rich Low_complexity Low_complexity 4 60 0 4 763 308 280 63 50 chr4 23337201 23337423 -132292697 - L1MC4a LINE L1 -1829 6053 5829 4 763 221 200 20 0 chr4 23337426 23337476 -132292644 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 4 763 396 290 36 14 chr4 23337578 23337718 -132292402 - L1MC4a LINE L1 -2411 5471 5329 4 763 302 373 6 30 chr4 23338741 23338907 -132291213 + RSINE1 SINE B4 3 164 -1 4 763 3925 202 70 26 chr4 23339014 23339885 -132290235 + Lx5 LINE L1 6137 7045 -5 4 763 318 342 12 65 chr4 23340129 23340298 -132289822 - LTR82A LTR ERVL -541 331 172 4 763 675 300 17 20 chr4 23340355 23340699 -132289421 - L1_Mur3 LINE L1 -2423 3457 3115 4 763 5785 224 73 24 chr4 23340785 23342034 -132288086 + Lx6 LINE L1 5528 6875 -585 4 763 519 108 0 0 chr4 23342034 23342127 -132287993 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 4 763 5785 247 85 22 chr4 23342127 23342524 -132287596 + Lx6 LINE L1 6876 7281 -179 4 763 271 352 82 0 chr4 23342711 23342833 -132287287 - MER58A DNA MER1_type -17 207 76 4 763 431 226 35 0 chr4 23342931 23343046 -132287074 - Lx9 LINE L1 -8 7636 7518 4 763 423 0 0 0 chr4 23343046 23343093 -132287027 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 763 351 211 26 0 chr4 23343111 23343187 -132286933 - Lx9 LINE L1 -188 7456 7379 4 763 1034 88 0 0 chr4 23344978 23345114 -132285006 + B1_Mus1 SINE Alu 1 136 -12 4 763 2132 80 13 13 chr4 23345136 23345451 -132284669 + L1Md_F2 LINE L1 6268 6582 0 4 763 282 313 30 0 chr4 23345827 23345894 -132284226 + B4 SINE B4 2 70 -222 4 763 319 331 40 16 chr4 23345932 23346058 -132284062 + B4 SINE B4 164 292 0 4 763 859 264 120 28 chr4 23346096 23346528 -132283592 + L1_Mur3 LINE L1 4373 4844 -1036 4 763 1046 109 0 0 chr4 23346537 23346684 -132283436 + B1_Mus2 SINE Alu 1 147 0 4 763 378 227 283 34 chr4 23346759 23346992 -132283128 - L1_Mur3 LINE L1 -650 5230 4940 4 763 2684 84 13 16 chr4 23347022 23347409 -132282711 + Lx LINE L1 6263 6648 -6 4 763 270 143 0 0 chr4 23347509 23347558 -132282562 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 763 1477 110 9 0 chr4 23347605 23347860 -132282260 + L1_Mus3 LINE L1 6405 6638 0 4 763 693 56 0 0 chr4 23348472 23348561 -132281559 + RLTR10 LTR ERVK 299 387 -3 4 763 1572 60 5 0 chr4 23348630 23348829 -132281291 + RLTR10-int LTR ERVK 13 212 -1775 4 763 700 84 22 23 chr4 23348854 23348969 -132281151 + RLTR10 LTR ERVK 292 411 0 4 763 5814 29 6 1 chr4 23348969 23349653 -132280467 + RLTR10-int LTR ERVK 302 988 -999 4 763 8731 20 0 2 chr4 23349733 23350728 -132279392 + RLTR10-int LTR ERVK 992 1984 -3 4 763 3077 23 7 85 chr4 23350730 23351153 -132278967 + RLTR10 LTR ERVK 1 390 0 4 763 495 0 0 0 chr4 23352160 23352215 -132277905 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 4 763 531 202 0 0 chr4 23352460 23352589 -132277531 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 763 469 294 147 26 chr4 23352836 23353143 -132276977 + Tigger7 DNA MER2_type 2147 2490 -1 4 763 22 0 0 0 chr4 23353168 23353190 -132276930 + AT_rich Low_complexity Low_complexity 1 22 0 4 763 200 184 41 0 chr4 23353311 23353360 -132276760 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 763 183 42 0 0 chr4 23353368 23353392 -132276728 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 4 763 338 153 51 34 chr4 23353518 23353694 -132276426 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 763 471 60 0 0 chr4 23353811 23353878 -132276242 + (TAAAA)n Simple_repeat Simple_repeat 5 71 0 4 763 571 272 77 0 chr4 23353963 23354132 -132275988 - Lx6 LINE L1 -4 7456 7275 4 763 384 22 0 0 chr4 23354756 23354801 -132275319 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 763 550 162 0 17 chr4 23358344 23358463 -132271657 + (CA)n Simple_repeat Simple_repeat 1 117 0 4 763 183 42 0 0 chr4 23358463 23358487 -132271633 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 763 580 292 66 44 chr4 23358520 23358746 -132271374 - MT2A LTR ERVL -216 317 87 4 763 2313 112 10 0 chr4 23358746 23359160 -132270960 - Lx2 LINE L1 -1096 5901 5483 4 763 2023 203 54 5 chr4 23359151 23359557 -132270563 - Lx2B LINE L1 -374 6626 6201 4 763 407 350 29 7 chr4 23359660 23359798 -132270322 - B1_Mur1 SINE Alu -8 141 1 4 763 2379 245 55 36 chr4 23359942 23360389 -132269731 + Lx9 LINE L1 6579 7034 -610 4 763 3251 172 90 14 chr4 23360389 23361032 -132269088 - RLTR17 LTR ERVK 0 692 1 4 763 2379 245 55 36 chr4 23361032 23361252 -132268868 + Lx9 LINE L1 7035 7259 -385 4 763 244 105 66 189 chr4 23361313 23361419 -132268701 - L1_Rod LINE L1 -624 5223 5131 4 763 507 107 0 0 chr4 23361419 23361494 -132268626 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 763 278 59 0 0 chr4 23361494 23361528 -132268592 + (TCC)n Simple_repeat Simple_repeat 1 34 0 4 763 2230 279 63 43 chr4 23361566 23362853 -132267267 - L1_Rod LINE L1 -759 5088 3777 4 763 336 48 0 0 chr4 23362886 23362928 -132267192 + (TTTCC)n Simple_repeat Simple_repeat 5 46 0 4 763 819 159 11 22 chr4 23362929 23363109 -132267011 + CT-rich Low_complexity Low_complexity 3 180 0 4 763 548 195 81 8 chr4 23363115 23363239 -132266881 - B1_Mur3 SINE Alu -2 147 15 4 763 237 270 39 39 chr4 23363286 23363390 -132266730 - L1MD LINE L1 -2448 3698 3595 4 763 290 296 16 82 chr4 23363391 23363575 -132266545 - L1_Rod LINE L1 -2435 3412 3241 4 763 1424 242 155 73 chr4 23363623 23364497 -132265623 - L1_Rod LINE L1 -2747 3100 2156 4 763 1135 230 37 76 chr4 23364508 23364889 -132265231 + L1_Rod LINE L1 5332 5697 -150 4 763 232 295 39 0 chr4 23365065 23365143 -132264977 + Lx9 LINE L1 6652 6732 -912 4 763 1258 161 38 0 chr4 23365146 23365382 -132264738 - Lx LINE L1 -7 6647 6403 4 763 1793 111 4 0 chr4 23365384 23365637 -132264483 + Lx LINE L1 5984 6237 -417 4 763 2915 16 2 79 chr4 23365689 23366105 -132264015 + RLTR10 LTR ERVK 1 384 -6 4 763 762 50 10 0 chr4 23366106 23366206 -132263914 + RLTR10 LTR ERVK 290 390 0 4 763 16850 28 1 0 chr4 23366216 23368158 -132261962 + RLTR10-int LTR ERVK 41 1984 -3 4 763 3058 18 2 114 chr4 23368160 23368599 -132261521 + RLTR10 LTR ERVK 1 390 0 4 763 1753 308 54 29 chr4 23368618 23369304 -132260816 + Lx9 LINE L1 6771 7473 -171 4 763 492 250 0 26 chr4 23369312 23369464 -132260656 + Lx2B LINE L1 6839 6986 -14 4 763 180 0 0 0 chr4 23369464 23369484 -132260636 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 4 763 3762 80 23 8 chr4 23369838 23370357 -132259763 + L1Md_F2 LINE L1 6052 6578 -4 4 763 21 36 0 0 chr4 23370681 23370709 -132259411 + AT_rich Low_complexity Low_complexity 1 28 0 4 763 222 269 0 15 chr4 23370837 23370905 -132259215 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 763 454 340 84 51 chr4 23370916 23371189 -132258931 - B4 SINE B4 -10 282 1 4 763 340 276 295 0 chr4 23371447 23371603 -132258517 - B3 SINE B2 -10 206 5 4 763 587 335 71 13 chr4 23371609 23372130 -132257990 - L1MB2 LINE L1 -1 6170 5620 4 763 382 331 64 44 chr4 23372145 23372493 -132257627 - MTEa LTR MaLR 0 379 1 4 763 340 308 66 73 chr4 23372845 23373104 -132257016 - MER31B LTR ERV1 -209 257 1 4 763 261 172 0 0 chr4 23373258 23373322 -132256798 + GA-rich Low_complexity Low_complexity 1 64 0 4 763 405 227 0 0 chr4 23374674 23374784 -132255336 + CT-rich Low_complexity Low_complexity 3 112 0 4 763 21 57 0 0 chr4 23375582 23375617 -132254503 + AT_rich Low_complexity Low_complexity 1 35 0 4 763 1060 77 6 15 chr4 23376000 23376166 -132253954 + ORR1A0 LTR MaLR 167 346 0 4 763 1271 181 13 0 chr4 23376763 23376989 -132253131 + RMER19C LTR ERVK 1 229 -382 4 763 184 176 14 14 chr4 23377037 23377106 -132253014 + T-rich Low_complexity Low_complexity 2 70 0 4 763 8373 65 23 0 chr4 23377110 23378937 -132251183 - L1Md_F2 LINE L1 -14 6568 4686 4 763 1828 134 254 31 chr4 23378937 23379385 -132250735 - RLTR6_Mm LTR ERV1 -70 584 37 4 763 2502 87 0 0 chr4 23379498 23379844 -132250276 - L1Md_F2 LINE L1 -1194 4689 4344 4 763 8294 62 2 0 chr4 23379844 23380929 -132249191 + L1Md_F2 LINE L1 3279 4365 -1518 4 763 3897 239 60 38 chr4 23380940 23381947 -132248173 - Lx5 LINE L1 0 7050 6022 4 763 737 256 64 57 chr4 23381977 23382275 -132247845 - RMER1C Other Other 0 1342 1043 4 763 2607 203 88 14 chr4 23382283 23382873 -132247247 - Lx2B LINE L1 -7 6993 6360 4 763 954 186 36 41 chr4 23382869 23383088 -132247032 + Lx2B LINE L1 6130 6347 -653 4 763 195 42 0 0 chr4 23383088 23383112 -132247008 + (T)n Simple_repeat Simple_repeat 1 24 0 4 763 1114 75 14 0 chr4 23383113 23383259 -132246861 - B1_Mus1 SINE Alu 0 148 1 4 763 1557 315 55 40 chr4 23383279 23383948 -132246172 - RMER1C Other Other -291 1051 373 4 763 23 0 0 0 chr4 23384107 23384130 -132245990 + AT_rich Low_complexity Low_complexity 1 23 0 4 763 420 305 40 70 chr4 23384138 23384512 -132245608 - L1MEg LINE L1 -4705 1379 1017 4 763 225 178 13 40 chr4 23384514 23384590 -132245530 + CT-rich Low_complexity Low_complexity 4 77 0 4 763 266 336 36 86 chr4 23384661 23384801 -132245319 - B3A SINE B2 -58 140 8 4 763 3392 58 2 0 chr4 23384965 23385394 -132244726 - RLTR13B1 LTR ERVK 0 893 464 4 763 901 76 8 0 chr4 23385384 23385503 -132244617 - RLTR13B1 LTR ERVK -773 120 1 4 763 2250 63 0 0 chr4 23385705 23385992 -132244128 + ORR1A1 LTR MaLR 1 287 -59 4 763 202 61 0 57 chr4 23387282 23387317 -132242803 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 4 763 195 42 0 0 chr4 23387445 23387469 -132242651 + (T)n Simple_repeat Simple_repeat 1 24 0 4 763 1056 55 0 27 chr4 23387634 23387783 -132242337 - B2_Mm2 SINE B2 -49 146 2 4 763 9552 89 11 38 chr4 23387835 23389929 -132240191 - Lx3_Mus LINE L1 -8 7001 4970 4 763 1397 254 59 13 chr4 23390499 23390957 -132239163 - L1ME2 LINE L1 -230 5934 5456 4 763 525 307 116 44 chr4 23391100 23391758 -132238362 - L1ME2 LINE L1 -1107 5039 4335 4 763 646 293 107 34 chr4 23391897 23392522 -132237598 - L1ME2 LINE L1 -2242 3904 3234 4 763 611 353 28 8 chr4 23392574 23392825 -132237295 - Lx8 LINE L1 -723 6750 6495 4 763 22 0 0 0 chr4 23392976 23392998 -132237122 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 26 0 0 0 chr4 23393077 23393103 -132237017 + AT_rich Low_complexity Low_complexity 1 26 0 5 763 3039 119 112 5 chr4 23393198 23393754 -132236366 - Lx3C LINE L1 -1685 4201 3587 5 763 7269 160 47 75 chr4 23393753 23394136 -132235984 + Lx3C LINE L1 4204 4588 -1298 5 763 1048 105 14 0 chr4 23394136 23394279 -132235841 - B1_Mus1 SINE Alu 0 148 4 5 763 7269 149 41 48 chr4 23394279 23395974 -132234146 + Lx3C LINE L1 4589 6236 -740 5 763 1685 231 18 21 chr4 23395974 23396433 -132233687 - L1Md_F LINE L1 -5577 942 52 5 763 4155 80 25 31 chr4 23396438 23397045 -132233075 + L1_Mus2 LINE L1 5962 6564 -2 5 763 4491 134 5 44 chr4 23397050 23397821 -132232299 + Lx3C LINE L1 6221 6961 -15 5 763 414 0 0 0 chr4 23397822 23397868 -132232252 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 763 28 29 0 0 chr4 23398324 23398359 -132231761 + AT_rich Low_complexity Low_complexity 1 35 0 5 763 21 0 0 0 chr4 23398396 23398417 -132231703 + AT_rich Low_complexity Low_complexity 1 21 0 5 763 24 32 0 0 chr4 23398893 23398924 -132231196 + AT_rich Low_complexity Low_complexity 1 31 0 5 763 28 29 0 0 chr4 23399073 23399108 -132231012 + AT_rich Low_complexity Low_complexity 1 35 0 5 763 33593 98 15 14 chr4 23399215 23405557 -132224563 - L1Md_F2 LINE L1 0 6582 237 5 763 4623 99 14 1 chr4 23405944 23406591 -132223529 + Lx3_Mus LINE L1 6347 7001 -8 5 763 241 240 268 16 chr4 23406841 23406964 -132223156 + MLT1E2 LTR MaLR 117 270 -357 5 763 309 234 0 94 chr4 23407463 23407548 -132222572 + B1_Mur2 SINE Alu 72 148 -1 5 763 2545 93 6 0 chr4 23407869 23408224 -132221896 + L1_Mus1 LINE L1 6207 6563 -4 5 763 1330 191 30 90 chr4 23408362 23408695 -132221425 + RLTR26 LTR ERVK 330 642 0 5 763 4149 44 0 0 chr4 23408730 23409231 -132220889 - L1Md_F2 LINE L1 -12 6570 6070 5 763 502 313 6 74 chr4 23409238 23409400 -132220720 - RSINE1 SINE B4 0 165 15 5 763 451 295 0 152 chr4 23410295 23410459 -132219661 - B1F SINE Alu -6 143 5 5 763 24 0 0 0 chr4 23410459 23410483 -132219637 + AT_rich Low_complexity Low_complexity 1 24 0 5 763 308 272 29 10 chr4 23410807 23410911 -132219209 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 763 2141 115 30 0 chr4 23412082 23412412 -132217708 - L1_Mus3 LINE L1 -13 6625 6286 5 763 4691 71 5 0 chr4 23413161 23413779 -132216341 + L1Md_F2 LINE L1 4966 5586 -297 5 763 7478 77 11 2 chr4 23413779 23414766 -132215354 + L1Md_F2 LINE L1 5587 6582 0 5 763 462 342 105 51 chr4 23415455 23415846 -132214274 - Zaphod DNA Tip100 -3409 622 211 5 763 24 0 0 0 chr4 23416253 23416277 -132213843 + AT_rich Low_complexity Low_complexity 1 24 0 5 763 25 0 0 0 chr4 23418322 23418347 -132211773 + AT_rich Low_complexity Low_complexity 1 25 0 5 763 779 80 9 0 chr4 23419089 23419201 -132210919 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 5 763 21 82 0 0 chr4 23420570 23420619 -132209501 + AT_rich Low_complexity Low_complexity 1 49 0 5 763 631 282 47 24 chr4 23421936 23422147 -132207973 - B3 SINE B2 0 216 1 5 763 6622 184 25 8 chr4 23422261 23423611 -132206509 - Lx5 LINE L1 -140 6910 5526 5 763 369 327 95 112 chr4 23423969 23424265 -132205855 + B4A SINE B4 2 292 0 5 763 46 54 0 0 chr4 23424931 23425005 -132205115 + AT_rich Low_complexity Low_complexity 1 74 0 5 763 286 281 162 61 chr4 23425992 23426140 -132203980 - RSINE1 SINE B4 0 165 3 5 763 452 265 184 33 chr4 23426737 23427149 -132202971 - Lx8 LINE L1 0 7473 6999 5 763 477 0 0 0 chr4 23427150 23427203 -132202917 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 763 387 0 0 0 chr4 23427203 23427245 -132202875 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 763 402 250 153 68 chr4 23427353 23427529 -132202591 - MTB_Mm LTR MaLR -216 191 1 5 763 1069 298 31 55 chr4 23427651 23428106 -132202014 - Lx8 LINE L1 -933 6540 6097 5 763 534 296 107 5 chr4 23428254 23428551 -132201569 + L1M2 LINE L1 5470 5798 -376 5 763 338 282 25 25 chr4 23428543 23428663 -132201457 + Lx7 LINE L1 5808 5927 -1769 5 763 21 36 0 0 chr4 23429386 23429414 -132200706 + AT_rich Low_complexity Low_complexity 1 28 0 5 763 23 54 0 0 chr4 23429672 23429709 -132200411 + AT_rich Low_complexity Low_complexity 1 37 0 5 763 3450 33 0 0 chr4 23429775 23430171 -132199949 - MTA_Mm LTR MaLR 0 396 1 5 763 738 198 30 22 chr4 23430272 23430510 -132199610 - Lx3B LINE L1 -1 6972 6693 5 763 206 95 24 0 chr4 23430524 23430566 -132199554 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 763 852 85 8 0 chr4 23430567 23430685 -132199435 - B1_Mus1 SINE Alu -1 147 29 5 763 21 36 0 0 chr4 23430809 23430837 -132199283 + AT_rich Low_complexity Low_complexity 1 28 0 5 763 30 77 0 0 chr4 23430937 23431002 -132199118 + AT_rich Low_complexity Low_complexity 1 65 0 5 763 299 141 153 0 chr4 23431021 23431106 -132199014 - Lx9 LINE L1 -226 7418 7321 5 763 750 169 111 5 chr4 23431109 23431317 -132198803 + Lx9 LINE L1 7414 7643 -1 5 763 2597 90 126 10 chr4 23433267 23433672 -132196448 - Lx2 LINE L1 -1 6996 6545 5 763 198 0 0 0 chr4 23433928 23433950 -132196170 + (TAAAAA)n Simple_repeat Simple_repeat 4 25 0 5 763 37 0 0 0 chr4 23435407 23435444 -132194676 + AT_rich Low_complexity Low_complexity 1 37 0 5 763 245 217 0 16 chr4 23435712 23435773 -132194347 - L1M2 LINE L1 -919 5378 5319 5 763 326 237 44 15 chr4 23435913 23436050 -132194070 - L1M2 LINE L1 -869 5274 5134 5 763 396 244 129 18 chr4 23436239 23436498 -132193622 + L1MA5A LINE L1 5657 5949 -351 5 763 468 0 0 0 chr4 23437354 23437406 -132192714 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 763 306 0 0 0 chr4 23438067 23438101 -132192019 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 763 371 56 0 53 chr4 23439715 23439790 -132190330 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 5 763 423 56 0 0 chr4 23441867 23441921 -132188199 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 763 897 250 30 9 chr4 23443181 23443411 -132186709 + MER96B DNA hAT 1 235 -182 5 763 735 251 18 12 chr4 23443662 23443827 -132186293 - B3 SINE B2 -46 170 5 5 763 241 152 43 0 chr4 23445755 23445801 -132184319 + Tigger10 DNA Tigger 261 308 -1535 5 763 248 306 0 27 chr4 23445997 23446071 -132184049 - PB1D10 SINE Alu -29 88 17 5 763 222 220 0 0 chr4 23446915 23446974 -132183146 + (CATA)n Simple_repeat Simple_repeat 4 62 0 5 763 1371 216 0 61 chr4 23446974 23447304 -132182816 - ORR1A4 LTR MaLR 0 329 20 5 763 750 115 32 6 chr4 23447321 23447478 -132182642 + (TA)n Simple_repeat Simple_repeat 1 161 0 5 763 342 292 78 9 chr4 23447479 23447697 -132182423 - Lx8 LINE L1 -1565 5908 5676 5 763 822 338 35 19 chr4 23447698 23448265 -132181855 - Lx8 LINE L1 -1254 4889 4282 5 763 2048 70 0 14 chr4 23448346 23448622 -132181498 - L1_Mus1 LINE L1 0 6567 6296 5 763 2586 72 0 0 chr4 23448622 23448953 -132181167 + L1_Mus1 LINE L1 5959 6289 -278 5 763 1545 164 92 0 chr4 23449169 23449462 -132180658 + IAPLTR4_I LTR ERVK 1 320 -12 5 763 5670 75 18 22 chr4 23449462 23450317 -132179803 + IAPLTR4_I LTR ERVK 11 952 -6629 5 763 1579 188 109 45 chr4 23450429 23450927 -132179193 + RMER16-int LTR ERVK 251 689 -5448 5 763 365 283 88 0 chr4 23450913 23451026 -132179094 + RMER16-int LTR ERVK 938 1060 -5077 5 763 300 267 0 55 chr4 23451039 23451130 -132178990 + IAPEY3-int LTR ERVK 2454 2539 -4867 5 763 584 227 0 0 chr4 23451142 23451261 -132178859 + IAPEY3-int LTR ERVK 2635 2753 -4653 5 763 3124 134 198 5 chr4 23451287 23451878 -132178242 + IAPEY3-int LTR ERVK 3567 4271 -3135 5 763 522 154 37 37 chr4 23451883 23451991 -132178129 + MMETn-int LTR ERVK 2357 2464 -2380 5 763 851 79 39 8 chr4 23452017 23452145 -132177975 + IAPEY3-int LTR ERVK 4530 4661 -2920 5 763 3275 86 0 37 chr4 23452415 23452872 -132177248 + IAPEY3-int LTR ERVK 5203 5642 -1939 5 763 3411 95 0 2 chr4 23452863 23453318 -132176802 + IAPEY3-int LTR ERVK 5761 6214 -1367 5 763 4736 104 16 23 chr4 23453308 23454201 -132175919 + IAPEY3-int LTR ERVK 6743 7581 0 5 763 1464 174 92 0 chr4 23454201 23454494 -132175626 + IAPEY3_LTR LTR ERVK 1 320 -12 5 763 647 279 5 5 chr4 23454502 23454740 -132175380 - Lx8 LINE L1 -2117 4023 3764 5 763 207 0 0 0 chr4 23454766 23454789 -132175331 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 763 1039 103 0 0 chr4 23454789 23454925 -132175195 - B1_Mus2 SINE Alu -10 137 2 5 763 678 103 8 8 chr4 23454938 23455065 -132175055 - L1_Mus4 LINE L1 -5 6631 6505 5 763 246 284 53 0 chr4 23455337 23455432 -132174688 - Lx8 LINE L1 -2299 3578 3479 5 763 397 295 102 67 chr4 23455781 23456213 -132173907 - L1MEg LINE L1 -4570 1514 1068 5 763 181 98 0 47 chr4 23456321 23456364 -132173756 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 763 335 336 24 0 chr4 23456370 23456495 -132173625 + Lx7 LINE L1 5616 5743 -1953 5 763 800 264 24 16 chr4 23456547 23456801 -132173319 + L1_Mur3 LINE L1 5306 5561 -319 5 763 231 376 108 0 chr4 23456836 23456993 -132173127 - Lx8 LINE L1 -237 7236 7063 5 763 1372 286 154 33 chr4 23456996 23457729 -132172391 - Lx9 LINE L1 -290 7354 6533 5 763 703 123 0 0 chr4 23457739 23457853 -132172267 + MusHAL1 LINE L1 873 986 -1726 5 763 2531 52 3 0 chr4 23457853 23458178 -132171942 - IAPEY2_LTR LTR ERVK 0 357 32 5 763 6894 88 31 11 chr4 23458187 23458351 -132171769 + MusHAL1 LINE L1 980 1145 -1567 5 763 3729 58 10 4 chr4 23458351 23458834 -132171286 + L1Md_F2 LINE L1 6097 6582 0 5 763 6894 88 31 11 chr4 23458834 23459729 -132170391 + MusHAL1 LINE L1 1146 2059 -653 5 763 4062 165 47 1 chr4 23459729 23460457 -132169663 + Lx LINE L1 5889 6649 -5 5 763 180 0 0 0 chr4 23460486 23460506 -132169614 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 763 23 0 0 0 chr4 23460549 23460572 -132169548 + AT_rich Low_complexity Low_complexity 1 23 0 5 763 350 57 19 0 chr4 23460577 23460630 -132169490 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 763 2576 236 87 53 chr4 23460638 23460998 -132169122 - L1_Rod LINE L1 -3420 2427 2033 5 763 294 29 0 0 chr4 23460998 23461033 -132169087 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 763 2576 236 87 53 chr4 23461033 23461155 -132168965 - L1_Rod LINE L1 -3815 2032 1945 5 763 1124 65 0 0 chr4 23461155 23461293 -132168827 - B1_Mus2 SINE Alu -9 138 1 5 95 2576 236 87 53 chr4 23461293 23461968 -132168152 - L1_Rod LINE L1 -3903 1944 1230 5 764 1079 73 0 0 chr4 23462889 23463025 -132167095 - B1_Mm SINE Alu -11 136 1 5 764 556 276 30 91 chr4 23464926 23465125 -132164995 - B3 SINE B2 -8 187 1 5 764 1993 147 3 23 chr4 23465169 23465517 -132164603 + Lx2 LINE L1 6656 6996 -1 5 764 4260 92 4 115 chr4 23465522 23466295 -132163825 - Lx3_Mus LINE L1 -658 5228 4542 5 764 4057 100 40 0 chr4 23466293 23466305 -132163815 + Lx3_Mus LINE L1 5261 5272 -614 5 764 223 49 24 24 chr4 23466305 23466347 -132163773 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 764 7007 119 28 7 chr4 23466347 23467813 -132162307 + Lx3_Mus LINE L1 5273 6767 -242 5 764 1706 247 159 72 chr4 23467813 23468252 -132161868 + RMER17B LTR ERVK 1 460 -498 5 764 814 60 0 8 chr4 23468252 23468369 -132161751 + L1_Mus1 LINE L1 6452 6567 0 5 764 1706 247 159 72 chr4 23468369 23468684 -132161436 + RMER17B LTR ERVK 461 821 -137 5 764 7573 75 3 4 chr4 23468703 23469834 -132160286 - L1_Mus1 LINE L1 -1 6566 5438 5 764 259 289 20 49 chr4 23469834 23469936 -132160184 + RMER13B LTR ERVK 806 904 -4 5 764 1214 157 12 41 chr4 23469937 23470182 -132159938 + Lx3A LINE L1 6742 6979 -2 6 764 37941 12 0 7 chr4 23470329 23475497 -132154623 + L1Md_A LINE L1 462 5586 -297 6 764 8693 19 0 0 chr4 23475497 23476493 -132153627 + L1Md_A LINE L1 5587 6582 0 6 764 22 35 0 0 chr4 23477167 23477196 -132152924 + AT_rich Low_complexity Low_complexity 1 29 0 6 764 1172 233 22 13 chr4 23477914 23478227 -132151893 + L1_Mur3 LINE L1 863 1178 -6550 6 764 387 200 63 0 chr4 23478232 23478327 -132151793 + L1_Mur3 LINE L1 5086 5186 -691 6 764 2493 281 52 45 chr4 23478323 23479216 -132150904 + Lx6 LINE L1 6220 7336 -124 6 764 24 67 0 0 chr4 23479284 23479329 -132150791 + AT_rich Low_complexity Low_complexity 1 45 0 6 764 640 245 7 0 chr4 23479606 23480230 -132149890 + (TG)n Simple_repeat Simple_repeat 1 628 0 6 764 21 36 0 0 chr4 23480327 23480355 -132149765 + AT_rich Low_complexity Low_complexity 1 28 0 6 764 180 0 0 0 chr4 23480430 23480450 -132149670 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 6 764 32 0 0 0 chr4 23481586 23481618 -132148502 + AT_rich Low_complexity Low_complexity 1 32 0 6 764 683 147 182 3 chr4 23482172 23482335 -132147785 - MTC LTR MaLR 0 421 210 6 764 7772 92 1 0 chr4 23482335 23483428 -132146692 - L1Md_F2 LINE L1 -1901 3982 2889 6 764 11526 76 5 6 chr4 23483425 23484994 -132145126 + L1Md_F2 LINE L1 4018 5585 -298 6 764 7285 72 17 10 chr4 23484996 23485972 -132144148 + L1Md_F2 LINE L1 5588 6570 -12 6 764 1305 176 64 39 chr4 23485978 23486151 -132143969 - MTC LTR MaLR -123 298 112 6 764 813 54 0 0 chr4 23486151 23486262 -132143858 + (GAA)n Simple_repeat Simple_repeat 2 112 0 6 764 1305 176 64 39 chr4 23486262 23486371 -132143749 - MTC LTR MaLR -310 111 10 6 764 270 250 48 0 chr4 23486890 23486994 -132143126 + L1M5 LINE L1 5777 5885 -239 6 764 382 359 62 58 chr4 23487455 23487730 -132142390 - L1ME1 LINE L1 -68 6111 5836 6 764 287 258 45 0 chr4 23488090 23488179 -132141941 + Lx7 LINE L1 7141 7233 -463 6 764 180 0 0 0 chr4 23488293 23488313 -132141807 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 764 486 46 0 0 chr4 23488313 23488378 -132141742 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 764 5881 127 24 14 chr4 23488378 23489338 -132140782 + Lx3A LINE L1 5999 6968 -13 6 764 222 91 0 0 chr4 23489369 23489402 -132140718 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 6 764 324 0 0 0 chr4 23489402 23489438 -132140682 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 764 204 221 0 42 chr4 23489439 23489510 -132140610 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 6 764 275 231 117 25 chr4 23489513 23489622 -132140498 + Lx7 LINE L1 7566 7686 -10 6 764 1518 156 21 3 chr4 23489622 23489905 -132140215 + Lx2A1 LINE L1 6716 7003 -5 6 764 12048 110 21 4 chr4 23490064 23491189 -132138931 + L1VL2 LINE L1 177 1385 -2230 6 764 2886 43 0 0 chr4 23491189 23491535 -132138585 - ORR1A1 LTR MaLR 0 346 1 6 764 12048 106 57 8 chr4 23491535 23493127 -132136993 + L1VL2 LINE L1 1386 2991 -624 6 764 950 48 0 8 chr4 23493192 23493317 -132136803 + (GAA)n Simple_repeat Simple_repeat 2 125 0 6 764 21 82 0 0 chr4 23493572 23493621 -132136499 + AT_rich Low_complexity Low_complexity 1 49 0 6 764 1477 184 157 15 chr4 23495178 23495521 -132134599 + ORR1B1 LTR MaLR 3 394 0 6 764 14815 159 46 25 chr4 23496268 23498531 -132131589 - Lx3C LINE L1 -7 6969 4644 6 764 189 74 0 0 chr4 23498531 23498558 -132131562 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 764 14815 150 16 16 chr4 23498558 23500000 -132130120 - Lx3C LINE L1 -1243 4643 3224 6 764 1099 119 14 29 chr4 23500000 23500125 -132129995 - MusHAL1 LINE L1 -697 2015 1896 1 764 447 227 190 84 chr4 23500125 23500457 -132129663 - RLTR9A LTR ERVK -1 367 1 2 764 1099 119 14 29 chr4 23500457 23500539 -132129581 - MusHAL1 LINE L1 -817 1895 1811 1 764 6018 176 50 14 chr4 23500537 23500703 -132129417 - L1_Mur1 LINE L1 -3356 2530 2372 3 764 3333 38 5 0 chr4 23500703 23501095 -132129025 + MTA_Mm LTR MaLR 3 396 0 4 764 6018 201 42 27 chr4 23501095 23502926 -132127194 - L1_Mur1 LINE L1 -3515 2371 519 3 764 339 44 0 0 chr4 23503473 23503518 -132126602 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 764 187 270 92 92 chr4 23505205 23505303 -132124817 + L3 LINE CR1 962 1059 -3430 6 764 584 309 9 28 chr4 23505615 23505831 -132124289 - B3 SINE B2 0 216 5 7 764 26 30 0 0 chr4 23506127 23506160 -132123960 + AT_rich Low_complexity Low_complexity 1 33 0 8 764 438 207 0 0 chr4 23506471 23506558 -132123562 + RMER6-int LTR ERVK 2672 2758 -419 9 764 1151 138 67 59 chr4 23506559 23506814 -132123306 + RMER6-int LTR ERVK 2916 3172 -5 9 764 1868 174 164 47 chr4 23506818 23507418 -132122702 + RMER6A LTR ERVK 1 690 0 9 764 235 366 75 25 chr4 23507454 23507653 -132122467 - L1MEc LINE L1 -5827 573 365 1 764 271 400 47 35 chr4 23508201 23508372 -132121748 + B4 SINE B4 106 278 -14 1 764 213 231 19 0 chr4 23508419 23508471 -132121649 + GA-rich Low_complexity Low_complexity 2 54 0 1 764 744 222 168 0 chr4 23508500 23508685 -132121435 - B3 SINE B2 0 216 1 1 764 879 301 14 18 chr4 23509024 23509301 -132120819 - Lx5 LINE L1 -658 6392 6117 1 764 1060 298 25 34 chr4 23509305 23509632 -132120488 + Lx5 LINE L1 6719 7042 -8 1 764 1489 187 98 12 chr4 23510667 23511003 -132119117 + ORR1C2 LTR MaLR 20 384 0 1 764 1329 262 100 39 chr4 23511504 23511893 -132118227 - MTD LTR MaLR -6 413 1 1 764 183 196 83 42 chr4 23512147 23512195 -132117925 - L2a LINE L2 -47 3379 3330 1 764 668 324 26 65 chr4 23514679 23514989 -132115131 + RMER15 LTR ERVL 275 572 -3 1 764 5856 109 16 3 chr4 23515104 23515963 -132114157 + Lx LINE L1 5774 6643 -11 2 764 207 0 0 0 chr4 23515963 23515986 -132114134 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 764 24 0 0 0 chr4 23516474 23516498 -132113622 + AT_rich Low_complexity Low_complexity 1 24 0 2 764 279 71 0 0 chr4 23519852 23519894 -132110226 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 2 764 306 73 0 0 chr4 23519894 23519934 -132110186 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 764 453 36 0 0 chr4 23520605 23520660 -132109460 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 764 23 54 0 0 chr4 23521119 23521156 -132108964 + AT_rich Low_complexity Low_complexity 1 37 0 2 764 259 271 105 86 chr4 23521285 23521495 -132108625 - Lx9 LINE L1 -18 7626 7413 2 764 734 202 51 0 chr4 23521492 23521650 -132108470 - Lx9 LINE L1 -582 7062 6897 2 764 479 285 71 31 chr4 23521710 23521837 -132108283 + RSINE1 SINE B4 5 136 -29 2 764 328 284 45 27 chr4 23521910 23522022 -132108098 + BC1_Mm scRNA scRNA 1 114 -38 2 764 25 0 0 0 chr4 23523084 23523109 -132107011 + AT_rich Low_complexity Low_complexity 1 25 0 3 764 1041 87 0 0 chr4 23523218 23523356 -132106764 + B1_Mus1 SINE Alu 1 138 -10 3 764 294 29 0 0 chr4 23523356 23523391 -132106729 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 764 21 57 0 0 chr4 23523671 23523706 -132106414 + AT_rich Low_complexity Low_complexity 1 35 0 3 764 252 0 0 0 chr4 23524734 23524762 -132105358 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 764 450 121 13 66 chr4 23526011 23526162 -132103958 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 3 764 202 185 37 0 chr4 23527124 23527178 -132102942 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 3 764 201 256 0 0 chr4 23527598 23527641 -132102479 - MIRm SINE MIR -121 155 113 3 764 266 149 30 0 chr4 23527869 23527936 -132102184 + GA-rich Low_complexity Low_complexity 2 70 0 3 764 6698 11 0 0 chr4 23531838 23532590 -132097530 + L1Md_T LINE L1 5831 6582 0 3 764 270 0 0 0 chr4 23532610 23532640 -132097480 + (A)n Simple_repeat Simple_repeat 1 30 0 4 764 180 0 0 0 chr4 23535607 23535627 -132094493 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 4 764 1175 75 0 0 chr4 23535629 23535776 -132094344 - B1_Mm SINE Alu 0 147 1 4 764 210 37 0 0 chr4 23535790 23535817 -132094303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 764 274 288 99 0 chr4 23535994 23536105 -132094015 - Lx8 LINE L1 -1024 6449 6328 4 764 1265 216 133 24 chr4 23536127 23536464 -132093656 - ORR1D1 LTR MaLR 0 374 1 4 764 370 308 15 8 chr4 23536654 23536785 -132093335 + Lx8 LINE L1 6945 7076 -397 4 764 378 317 92 32 chr4 23536852 23537103 -132093017 + Lx8 LINE L1 7203 7468 -5 4 764 1997 154 8 52 chr4 23537238 23537600 -132092520 - Lx4A LINE L1 0 7058 6713 4 764 566 118 11 0 chr4 23540806 23540899 -132089221 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 764 427 256 207 6 chr4 23540931 23541100 -132089020 + B3 SINE B2 1 203 -13 4 764 23 0 0 0 chr4 23541123 23541146 -132088974 + AT_rich Low_complexity Low_complexity 1 23 0 5 764 30 69 0 0 chr4 23541654 23541712 -132088408 + AT_rich Low_complexity Low_complexity 1 58 0 5 764 239 175 0 17 chr4 23543348 23543406 -132086714 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 764 902 138 0 12 chr4 23543797 23543958 -132086162 + CT-rich Low_complexity Low_complexity 2 160 0 5 764 237 342 14 0 chr4 23543972 23544045 -132086075 - MER2 DNA MER2_type -270 75 2 5 764 982 258 135 3 chr4 23545384 23545711 -132084409 + ORR1D2 LTR MaLR 1 370 0 5 764 499 275 11 28 chr4 23546011 23546156 -132083964 - B1_Mur1 SINE Alu -2 147 1 5 764 422 321 99 0 chr4 23546374 23546505 -132083615 + B1F SINE Alu 6 149 0 5 764 225 0 0 0 chr4 23546595 23546620 -132083500 + (A)n Simple_repeat Simple_repeat 1 25 0 5 764 2069 153 57 30 chr4 23547129 23547568 -132082552 + RLTR11B LTR ERVK 1 451 -2 5 764 814 246 55 182 chr4 23547928 23548633 -132081487 - RLTR18 LTR ERVK 0 616 1 6 764 413 36 18 0 chr4 23548788 23548843 -132081277 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 6 764 219 69 0 0 chr4 23549795 23549824 -132080296 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 764 243 0 0 0 chr4 23549838 23549865 -132080255 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 764 739 283 116 11 chr4 23549908 23550176 -132079944 + Lx9 LINE L1 7082 7377 -267 6 764 22 35 0 0 chr4 23551660 23551689 -132078431 + AT_rich Low_complexity Low_complexity 1 29 0 6 764 7353 13 1 0 chr4 23552517 23553338 -132076782 + RLTR13B2 LTR ERVK 1 822 0 6 764 23 86 0 0 chr4 23553471 23553529 -132076591 + AT_rich Low_complexity Low_complexity 1 58 0 6 764 424 326 153 44 chr4 23554188 23554346 -132075774 - MER20B DNA MER1_type -5 778 618 6 764 225 0 0 0 chr4 23554346 23554371 -132075749 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 764 424 326 153 44 chr4 23554371 23554642 -132075478 - MER20B DNA MER1_type -166 617 302 6 764 543 266 9 0 chr4 23554665 23554778 -132075342 + B3A SINE B2 1 114 -84 7 764 414 0 0 0 chr4 23554824 23554870 -132075250 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 764 318 335 25 49 chr4 23554912 23555075 -132075045 - MER20B DNA MER1_type -505 278 120 6 764 185 154 26 0 chr4 23556452 23556491 -132073629 + GA-rich Low_complexity Low_complexity 2 41 0 7 764 713 203 31 124 chr4 23558874 23558951 -132071169 - Lx9 LINE L1 -668 6976 6912 7 764 1628 208 16 32 chr4 23558951 23559324 -132070796 - ORR1B2 LTR MaLR 0 367 1 7 764 713 203 31 124 chr4 23559324 23559471 -132070649 - Lx9 LINE L1 -733 6911 6773 7 764 2445 190 42 10 chr4 23559473 23559779 -132070341 + RLTR11A LTR ERVK 1 319 -209 7 764 3204 114 4 27 chr4 23559779 23560295 -132069825 + Lx2A1 LINE L1 6502 7005 -3 7 764 2445 190 42 10 chr4 23560295 23560494 -132069626 + RLTR11A LTR ERVK 320 521 -7 7 764 926 217 81 0 chr4 23560509 23560707 -132069413 - Lx9 LINE L1 -890 6754 6541 7 764 357 310 8 45 chr4 23562332 23562464 -132067656 - B3 SINE B2 -87 129 3 7 764 494 250 108 54 chr4 23565275 23565423 -132064697 - RSINE1 SINE B4 0 165 10 7 764 1879 218 52 60 chr4 23565557 23566094 -132064026 + MT2A LTR ERVL 1 533 0 7 764 209 346 50 59 chr4 23566217 23566378 -132063742 - MIRb SINE MIR -85 183 15 8 764 271 286 41 0 chr4 23567245 23567343 -132062777 + L1MCa LINE L1 59 160 -6348 8 764 307 208 30 0 chr4 23567408 23567500 -132062620 + RMER6C LTR ERVK 50 181 -539 8 764 21 0 0 0 chr4 23567510 23567531 -132062589 + AT_rich Low_complexity Low_complexity 1 21 0 8 764 6228 113 3 2 chr4 23567533 23568436 -132061684 - L1_Mus3 LINE L1 -4 6634 5731 8 764 4457 157 6 35 chr4 23568431 23568540 -132061580 + L1_Mm LINE L1 4554 4639 -1244 8 764 207 0 0 0 chr4 23568540 23568563 -132061557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 764 4457 157 6 35 chr4 23568563 23568660 -132061460 + L1_Mm LINE L1 4640 4734 -1149 8 764 186 43 0 0 chr4 23568660 23568683 -132061437 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 764 4457 157 6 35 chr4 23568683 23569287 -132060833 + L1_Mm LINE L1 4735 5341 -542 8 764 2187 186 78 78 chr4 23569294 23569887 -132060233 + RMER6C LTR ERVK 97 689 -1 8 764 270 0 0 0 chr4 23570549 23570579 -132059541 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 764 685 247 105 0 chr4 23570712 23570902 -132059218 + B3 SINE B2 1 210 -6 8 764 1454 284 88 42 chr4 23570999 23572092 -132058028 + L1MCa LINE L1 2822 3962 -2359 8 764 4929 112 11 20 chr4 23572092 23572834 -132057286 - Lx LINE L1 -6 6648 5914 9 764 1454 284 88 42 chr4 23572834 23572992 -132057128 + L1MCa LINE L1 3963 4130 -2191 8 764 605 282 45 15 chr4 23573012 23573210 -132056910 + B3 SINE B2 12 215 -1 9 764 180 0 0 0 chr4 23573320 23573340 -132056780 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 9 764 687 320 5 0 chr4 23573341 23573538 -132056582 - B3 SINE B2 -17 199 2 9 764 37851 31 1 0 chr4 23573561 23580631 -132049489 - L1Md_T LINE L1 0 6585 1 9 764 324 338 15 0 chr4 23580632 23580765 -132049355 + L1MCa LINE L1 4202 4336 -1985 8 764 474 344 63 42 chr4 23580766 23580957 -132049163 + B3A SINE B2 21 215 -1 9 764 185 65 0 31 chr4 23581000 23581032 -132049088 + (TTA)n Simple_repeat Simple_repeat 2 32 0 9 764 832 271 0 5 chr4 23581034 23581234 -132048886 - B3 SINE B2 -14 202 4 9 764 600 310 92 29 chr4 23581442 23581642 -132048478 + L1MCa LINE L1 4458 4662 -1659 8 764 279 0 0 0 chr4 23581642 23581673 -132048447 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 764 600 310 92 29 chr4 23581673 23581963 -132048157 + L1MCa LINE L1 4663 4979 -1342 8 764 1106 290 55 37 chr4 23581992 23582135 -132047985 + Lx7 LINE L1 6896 7033 -663 9 764 1066 67 0 0 chr4 23582135 23582270 -132047850 + B1_Mus1 SINE Alu 2 136 -12 1 764 1055 61 36 12 chr4 23582271 23582438 -132047682 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 1 764 1106 290 55 37 chr4 23582438 23582675 -132047445 + Lx7 LINE L1 7034 7285 -411 9 764 29 28 0 0 chr4 23582929 23582965 -132047155 + AT_rich Low_complexity Low_complexity 1 36 0 1 764 867 183 12 137 chr4 23583097 23583338 -132046782 - ORR1C2 LTR MaLR 0 384 174 1 764 485 124 0 10 chr4 23583339 23583437 -132046683 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 764 261 0 0 0 chr4 23583440 23583469 -132046651 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 764 452 225 19 156 chr4 23583472 23583515 -132046605 - ORR1C2 LTR MaLR -202 182 143 1 764 2463 83 66 30 chr4 23583515 23583911 -132046209 + L1_Mus2 LINE L1 6157 6566 0 1 764 452 225 19 156 chr4 23583911 23584078 -132046042 - ORR1C2 LTR MaLR -242 142 1 1 764 240 299 11 11 chr4 23584089 23584265 -132045855 + (CTGGGG)n Simple_repeat Simple_repeat 1 176 0 1 764 225 301 13 13 chr4 23584453 23584611 -132045509 + (CTGGGG)n Simple_repeat Simple_repeat 1 158 0 1 764 262 299 11 11 chr4 23584687 23584863 -132045257 + (CTGGGG)n Simple_repeat Simple_repeat 1 176 0 1 764 623 285 76 52 chr4 23585039 23585198 -132044922 + B3 SINE B2 1 149 -67 1 764 564 15 0 0 chr4 23585198 23585263 -132044857 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 764 623 285 76 52 chr4 23585263 23585314 -132044806 + B3 SINE B2 150 216 0 1 764 3000 247 108 22 chr4 23585442 23586358 -132043762 + Lx6 LINE L1 5811 6805 -655 1 764 2945 75 5 10 chr4 23588088 23588491 -132041629 - L1Md_F2 LINE L1 -11 6571 6171 1 764 831 293 63 27 chr4 23588958 23589320 -132040800 - MTD LTR MaLR -5 414 35 1 764 22 0 0 0 chr4 23590495 23590517 -132039603 + AT_rich Low_complexity Low_complexity 1 22 0 1 764 216 0 0 0 chr4 23590745 23590769 -132039351 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 764 687 284 29 19 chr4 23591136 23591344 -132038776 + ORR1E LTR MaLR 1 210 -149 1 764 568 65 0 0 chr4 23591347 23591424 -132038696 + L1_Mus2 LINE L1 6487 6563 -3 1 764 237 65 0 0 chr4 23591463 23591494 -132038626 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 764 363 273 26 103 chr4 23591494 23591649 -132038471 + ORR1E LTR MaLR 227 369 -1 1 764 341 352 15 67 chr4 23591650 23591784 -132038336 + RSINE1 SINE B4 39 165 0 1 764 422 224 7 0 chr4 23591787 23591939 -132038181 + (CA)n Simple_repeat Simple_repeat 2 154 0 1 764 207 189 0 0 chr4 23591981 23592034 -132038086 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 764 471 226 0 0 chr4 23592053 23592212 -132037908 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 764 430 316 31 12 chr4 23592396 23592556 -132037564 - RSINE1 SINE B4 -2 163 1 1 765 225 0 0 0 chr4 23593788 23593813 -132036307 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 765 539 363 85 21 chr4 23594035 23594364 -132035756 - LTR82A LTR ERVL -431 441 92 1 765 433 296 103 14 chr4 23594522 23594745 -132035375 - L1MC1 LINE L1 0 6333 6091 1 765 1374 152 192 0 chr4 23594968 23595244 -132034876 + RMER6C LTR ERVK 1 329 -361 1 765 216 0 0 0 chr4 23595245 23595269 -132034851 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 765 486 49 0 0 chr4 23595269 23595329 -132034791 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 765 230 340 64 9 chr4 23595734 23595844 -132034276 - MER20 DNA MER1_type -87 132 17 1 765 22 0 0 0 chr4 23596706 23596728 -132033392 + AT_rich Low_complexity Low_complexity 1 22 0 1 765 6364 93 24 16 chr4 23596828 23597754 -132032366 - L1_Mus4 LINE L1 -2 6634 5702 1 765 3611 164 11 3 chr4 23597754 23598395 -132031725 + L1_Mm LINE L1 5004 5649 -234 1 765 604 206 46 0 chr4 23598696 23598827 -132031293 + URR1B DNA MER1_type 83 219 -6 1 765 346 366 78 81 chr4 23599048 23599408 -132030712 + ORR1E LTR MaLR 1 359 0 1 765 261 316 74 55 chr4 23599655 23599980 -132030140 + L1MA8 LINE L1 4505 4835 -1305 1 765 3578 178 22 0 chr4 23600059 23600754 -132029366 - L1_Mur2 LINE L1 -2905 2972 2263 1 765 3929 206 53 32 chr4 23600756 23601647 -132028473 + Lx3C LINE L1 6064 6972 -4 1 765 314 23 23 0 chr4 23601723 23601766 -132028354 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 765 714 202 0 102 chr4 23601767 23601815 -132028305 + Lx4B LINE L1 6831 6864 -194 1 765 1644 60 0 14 chr4 23601815 23602035 -132028085 + L1Md_A LINE L1 6354 6570 -12 1 765 714 202 0 102 chr4 23602035 23602173 -132027947 + Lx4B LINE L1 6865 6998 -60 1 765 556 142 62 0 chr4 23602171 23602284 -132027836 - Lx4B LINE L1 -958 6100 5981 1 765 1076 198 128 36 chr4 23602314 23602618 -132027502 + IAPEY3_LTR LTR ERVK 1 332 0 1 765 30 0 0 0 chr4 23602645 23602675 -132027445 + AT_rich Low_complexity Low_complexity 1 30 0 1 765 644 203 7 0 chr4 23602693 23602776 -132027344 + polypurine Low_complexity Low_complexity 2 84 0 1 765 1212 101 0 0 chr4 23602776 23602954 -132027166 + (GAA)n Simple_repeat Simple_repeat 3 180 0 1 765 644 203 7 0 chr4 23602954 23603018 -132027102 + polypurine Low_complexity Low_complexity 85 149 0 1 765 883 287 77 69 chr4 23603195 23603846 -132026274 + L1MA8 LINE L1 5583 6238 -53 1 765 246 32 0 0 chr4 23604373 23604404 -132025716 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 765 32 0 0 0 chr4 23604729 23604761 -132025359 + AT_rich Low_complexity Low_complexity 1 32 0 1 765 267 192 13 27 chr4 23606525 23606600 -132023520 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 1 765 912 73 0 0 chr4 23606601 23606724 -132023396 - B1_Mus1 SINE Alu -2 146 24 1 765 241 302 62 70 chr4 23607274 23607402 -132022718 + MER58A DNA MER1_type 74 200 -24 1 765 1170 55 0 0 chr4 23607505 23607651 -132022469 + B1_Mus1 SINE Alu 3 148 0 1 765 26 30 0 0 chr4 23608506 23608539 -132021581 + AT_rich Low_complexity Low_complexity 1 33 0 1 765 220 171 35 47 chr4 23608659 23608745 -132021375 + A-rich Low_complexity Low_complexity 2 86 0 1 765 1134 285 11 52 chr4 23608745 23608838 -132021282 - Lx6 LINE L1 -138 7322 7228 1 765 1187 35 0 0 chr4 23608838 23608980 -132021140 + B1_Mus2 SINE Alu 1 142 -5 1 765 1134 278 49 70 chr4 23608980 23609474 -132020646 - Lx6 LINE L1 -233 7227 6672 1 765 253 414 47 33 chr4 23609512 23609662 -132020458 - LTR33 LTR ERVL -257 258 107 1 765 1345 194 22 83 chr4 23609717 23610031 -132020089 - ORR1B1 LTR MaLR 0 394 100 1 765 536 349 111 36 chr4 23610771 23611187 -132018933 - MLT2B4 LTR ERVL -41 515 69 1 765 423 0 0 0 chr4 23611239 23611286 -132018834 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 765 502 326 25 54 chr4 23611734 23611938 -132018182 - B3A SINE B2 0 198 1 1 765 2161 196 5 18 chr4 23611976 23612371 -132017749 + MTC LTR MaLR 1 390 -31 1 765 324 0 0 0 chr4 23612371 23612407 -132017713 + (T)n Simple_repeat Simple_repeat 1 36 0 1 765 25 51 0 0 chr4 23612520 23612559 -132017561 + AT_rich Low_complexity Low_complexity 1 39 0 1 765 204 97 0 0 chr4 23612901 23612932 -132017188 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 765 649 183 8 38 chr4 23613037 23613168 -132016952 + L1_Mur1 LINE L1 5038 5164 -722 1 765 320 238 12 0 chr4 23613460 23613544 -132016576 - RMER1C Other Other -14 1328 1244 1 765 483 186 0 0 chr4 23613553 23613655 -132016465 + GA-rich Low_complexity Low_complexity 1 102 0 1 765 2064 237 121 4 chr4 23613655 23614209 -132015911 - RMER1C Other Other -127 1215 597 1 765 2548 183 93 118 chr4 23614763 23615073 -132015047 + RMER6D LTR ERVK 1 330 -390 1 765 624 27 0 0 chr4 23615073 23615147 -132014973 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 765 2548 183 93 118 chr4 23615147 23615574 -132014546 + RMER6D LTR ERVK 331 720 0 1 765 262 290 14 28 chr4 23615594 23615665 -132014455 + PB1 SINE Alu 3 72 -55 1 765 624 279 75 0 chr4 23616176 23616377 -132013743 - B3 SINE B2 0 216 1 1 765 235 319 0 0 chr4 23618330 23618377 -132011743 + tRNA-Ala-GCG tRNA tRNA 11 57 -18 1 765 527 64 13 0 chr4 23619928 23620006 -132010114 + L1_Mus1 LINE L1 6489 6567 0 1 765 1410 17 0 17 chr4 23621876 23622114 -132008006 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 1 765 249 240 0 0 chr4 23622117 23622167 -132007953 + CT-rich Low_complexity Low_complexity 3 52 0 1 765 5110 57 3 11 chr4 23622661 23623317 -132006803 - L1_Mus1 LINE L1 -1 6566 5916 1 765 3796 89 2 0 chr4 23623312 23623818 -132006302 - L1_Mus1 LINE L1 -2 6565 6059 1 765 341 149 0 8 chr4 23623818 23623888 -132006232 + L1_Mus2 LINE L1 6046 6120 -462 1 765 353 351 52 19 chr4 23625257 23625469 -132004651 + L1MCa LINE L1 30 248 -6260 1 765 885 236 30 91 chr4 23625721 23626084 -132004036 - Lx7 LINE L1 0 7696 7356 1 765 6193 219 35 12 chr4 23626197 23628285 -132001835 - Lx7 LINE L1 -569 7127 4991 1 765 250 324 27 48 chr4 23628272 23628460 -132001660 + L1MC3 LINE L1 7586 7769 -16 1 765 216 0 0 0 chr4 23629072 23629096 -132001024 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 765 237 176 12 171 chr4 23631066 23631148 -131998972 + RLTR11A2 LTR ERVK 290 358 -169 1 765 581 323 107 61 chr4 23631558 23632118 -131998002 + Lx8 LINE L1 6876 7461 -12 1 765 2137 133 3 0 chr4 23632240 23632562 -131997558 - ORR1A2 LTR MaLR 0 327 5 1 765 193 385 70 45 chr4 23632729 23632930 -131997190 + L2 LINE L2 1151 1356 -2063 1 765 863 271 120 25 chr4 23633018 23633302 -131996818 - MTE2b LTR MaLR -54 325 15 1 765 234 303 65 88 chr4 23633618 23633788 -131996332 + L2 LINE L2 2176 2341 -1078 1 765 1791 189 14 3 chr4 23633855 23634210 -131995910 - Lx4A LINE L1 -1 7057 6699 1 765 3242 133 25 4 chr4 23634210 23634722 -131995398 - Lx4A LINE L1 -533 6525 6003 1 765 322 135 0 0 chr4 23634718 23634770 -131995350 + L1_Mur2 LINE L1 97 148 -6564 1 765 3525 110 37 2 chr4 23634851 23635389 -131994731 - L1_Mus3 LINE L1 -2 6636 6080 1 765 353 75 19 0 chr4 23635591 23635644 -131994476 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1 765 494 326 14 7 chr4 23637292 23637434 -131992686 - B1F SINE Alu 0 149 7 1 765 747 255 52 33 chr4 23637519 23637730 -131992390 + B3 SINE B2 2 216 0 1 765 2639 103 7 29 chr4 23637915 23638324 -131991796 + RLTR9D LTR ERVK 1 400 -3 1 765 546 29 0 0 chr4 23638324 23638392 -131991728 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 765 189 94 0 0 chr4 23639267 23639299 -131990821 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 1 765 366 316 57 40 chr4 23639299 23639474 -131990646 - B3A SINE B2 -18 180 3 1 765 24 77 0 0 chr4 23639672 23639724 -131990396 + AT_rich Low_complexity Low_complexity 1 52 0 1 765 22 0 0 0 chr4 23640009 23640031 -131990089 + AT_rich Low_complexity Low_complexity 1 22 0 2 765 640 132 26 7 chr4 23640103 23640256 -131989864 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 2 765 549 0 0 0 chr4 23641810 23641871 -131988249 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 765 357 24 0 0 chr4 23641871 23641912 -131988208 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 765 495 0 0 0 chr4 23642263 23642318 -131987802 + (TAA)n Simple_repeat Simple_repeat 2 56 0 2 765 670 235 87 63 chr4 23642363 23642695 -131987425 + L1MA4 LINE L1 5638 5977 -323 2 765 970 294 64 107 chr4 23642907 23643440 -131986680 - Lx9 LINE L1 -370 7274 6765 2 765 290 288 84 21 chr4 23643456 23643598 -131986522 + Lx9 LINE L1 7316 7466 -178 2 765 22 35 0 0 chr4 23643601 23643630 -131986490 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 402 340 28 7 chr4 23643770 23643912 -131986208 + ID_B1 SINE B4 80 224 0 2 765 21 0 0 0 chr4 23643931 23643952 -131986168 + AT_rich Low_complexity Low_complexity 1 21 0 2 765 229 348 0 55 chr4 23644027 23644100 -131986020 + ID4 SINE ID 12 80 -3 2 765 453 269 6 124 chr4 23644547 23644642 -131985478 + B1_Mur2 SINE Alu 5 88 -61 2 765 5300 38 2 0 chr4 23644642 23645279 -131984841 - L1Md_T LINE L1 0 6582 5945 2 765 453 269 6 124 chr4 23645279 23645344 -131984776 + B1_Mur2 SINE Alu 89 146 -3 2 765 59 81 0 0 chr4 23645465 23645601 -131984519 + AT_rich Low_complexity Low_complexity 1 136 0 2 765 1092 55 7 27 chr4 23646383 23646533 -131983587 + B1_Mus2 SINE Alu 1 147 0 2 765 1130 56 21 0 chr4 23647025 23647169 -131982951 - B1_Mm SINE Alu 0 147 1 2 765 407 354 108 22 chr4 23647754 23648031 -131982089 + MLT1A0 LTR MaLR 65 365 0 2 765 1020 137 12 6 chr4 23648171 23648340 -131981780 + B2_Mm2 SINE B2 8 177 -18 2 765 1020 38 8 0 chr4 23648421 23648552 -131981568 + B1_Mm SINE Alu 14 145 -2 2 765 281 18 51 51 chr4 23648558 23648617 -131981503 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 765 28 29 0 0 chr4 23649028 23649063 -131981057 + AT_rich Low_complexity Low_complexity 1 35 0 2 765 2964 263 56 18 chr4 23649453 23650268 -131979852 - Lx9 LINE L1 -1 7643 6504 2 765 1796 79 0 16 chr4 23650268 23650526 -131979594 + L1_Mus2 LINE L1 6313 6566 0 2 765 2964 264 62 18 chr4 23650526 23650701 -131979419 - Lx9 LINE L1 -1141 6503 6327 2 765 816 11 0 0 chr4 23650987 23651080 -131979040 + (TTC)n Simple_repeat Simple_repeat 1 93 0 2 765 1920 86 0 25 chr4 23651085 23651370 -131978750 - L1Md_F2 LINE L1 0 6582 6305 2 765 3483 129 20 10 chr4 23651371 23652184 -131977936 - Lx4A LINE L1 -433 6205 5440 2 765 964 148 11 90 chr4 23652472 23652639 -131977481 - L1_Mur2 LINE L1 -819 5472 5282 2 765 3189 128 40 11 chr4 23652639 23653161 -131976959 - Lx3C LINE L1 -2 6974 6438 2 765 964 128 10 96 chr4 23653161 23653212 -131976908 - L1_Mur2 LINE L1 -596 5281 5243 2 765 204 40 0 0 chr4 23658619 23658644 -131971476 + (T)n Simple_repeat Simple_repeat 1 25 0 2 765 25 75 0 0 chr4 23661141 23661194 -131968926 + AT_rich Low_complexity Low_complexity 1 53 0 2 765 231 208 19 0 chr4 23661880 23661933 -131968187 - L1M5 LINE L1 -485 5755 5702 2 765 331 248 66 33 chr4 23661962 23662083 -131968037 + L1MC LINE L1 5188 5312 -834 2 765 629 285 33 120 chr4 23662109 23662408 -131967712 - MTEb LTR MaLR 0 379 107 2 765 240 310 83 31 chr4 23662676 23662869 -131967251 + L1M5 LINE L1 5353 5555 -607 2 765 3058 192 108 3 chr4 23664883 23665531 -131964589 - RMER6D LTR ERVK -4 716 1 2 765 27 29 0 0 chr4 23666432 23666466 -131963654 + AT_rich Low_complexity Low_complexity 1 34 0 2 765 28 0 0 0 chr4 23666684 23666712 -131963408 + AT_rich Low_complexity Low_complexity 1 28 0 2 765 3398 23 5 0 chr4 23667136 23667530 -131962590 - MTA_Mm LTR MaLR 0 396 1 2 765 339 105 0 0 chr4 23667816 23667873 -131962247 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 765 210 115 0 55 chr4 23667874 23667929 -131962191 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 765 183 380 33 0 chr4 23668905 23668997 -131961123 + MIR3 SINE MIR 79 173 -35 2 765 22 0 0 0 chr4 23669429 23669451 -131960669 + AT_rich Low_complexity Low_complexity 1 22 0 2 765 186 43 0 0 chr4 23670356 23670379 -131959741 + (A)n Simple_repeat Simple_repeat 1 23 0 2 765 1362 99 0 20 chr4 23670411 23670607 -131959513 - B2_Mm2 SINE B2 -3 192 1 2 765 28 61 0 0 chr4 23670677 23670726 -131959394 + AT_rich Low_complexity Low_complexity 1 49 0 2 765 231 269 0 0 chr4 23672620 23672672 -131957448 + GA-rich Low_complexity Low_complexity 5 56 0 2 765 372 43 0 0 chr4 23673872 23673918 -131956202 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 765 919 128 14 0 chr4 23673921 23674062 -131956058 - B2_Mm2 SINE B2 -52 143 1 2 765 236 351 52 0 chr4 23674135 23674212 -131955908 + ID4_ SINE ID 3 83 0 2 765 23 54 0 0 chr4 23674586 23674623 -131955497 + AT_rich Low_complexity Low_complexity 1 37 0 2 765 728 239 41 12 chr4 23675195 23675364 -131954756 - B3 SINE B2 -6 210 37 2 765 202 286 14 41 chr4 23676535 23676608 -131953512 + MIRm SINE MIR 203 273 -3 2 765 672 48 0 0 chr4 23676657 23676741 -131953379 + (TTTTC)n Simple_repeat Simple_repeat 1 84 0 2 765 1041 46 0 0 chr4 23676741 23676872 -131953248 + (TC)n Simple_repeat Simple_repeat 1 131 0 2 765 532 66 31 0 chr4 23676880 23676972 -131953148 - B1_Mus2 SINE Alu -13 107 2 2 765 288 309 23 35 chr4 23677344 23677515 -131952605 + (CATA)n Simple_repeat Simple_repeat 2 170 0 2 765 433 352 6 0 chr4 23677447 23677703 -131952417 + (CA)n Simple_repeat Simple_repeat 1 257 0 2 765 205 86 0 28 chr4 23678693 23678729 -131951391 + (TATAA)n Simple_repeat Simple_repeat 4 38 0 2 765 192 77 0 0 chr4 23678837 23678863 -131951257 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 2 765 324 0 0 0 chr4 23678982 23679018 -131951102 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 765 279 0 0 0 chr4 23679328 23679359 -131950761 + (A)n Simple_repeat Simple_repeat 1 31 0 2 765 24 0 0 0 chr4 23680324 23680348 -131949772 + AT_rich Low_complexity Low_complexity 1 24 0 2 765 21 0 0 0 chr4 23680664 23680685 -131949435 + AT_rich Low_complexity Low_complexity 1 21 0 2 765 260 320 0 0 chr4 23680836 23680911 -131949209 + A-rich Low_complexity Low_complexity 3 77 0 2 765 27 0 0 0 chr4 23681886 23681913 -131948207 + AT_rich Low_complexity Low_complexity 1 27 0 2 765 289 263 130 7 chr4 23683778 23683916 -131946204 + MIR SINE MIR 108 262 0 2 765 520 325 30 45 chr4 23684150 23684350 -131945770 - L4 LINE RTE -427 1602 1406 2 765 26 30 0 0 chr4 23684516 23684549 -131945571 + AT_rich Low_complexity Low_complexity 1 33 0 2 765 505 90 0 0 chr4 23685896 23685974 -131944146 - MusHAL1 LINE L1 -2648 706 629 2 765 410 157 14 0 chr4 23686344 23686414 -131943706 + Lx6 LINE L1 6353 6423 -1037 2 765 254 154 26 0 chr4 23686440 23686479 -131943641 + L1VL2 LINE L1 744 783 -5851 2 765 14920 172 23 29 chr4 23686624 23689315 -131940805 + L1VL2 LINE L1 742 3414 -2472 2 765 989 135 0 20 chr4 23689315 23689466 -131940654 + B1_Mus1 SINE Alu 1 148 0 2 765 14920 172 24 33 chr4 23689466 23689486 -131940634 + L1VL2 LINE L1 3415 3417 -2469 2 765 191 36 36 0 chr4 23689486 23689514 -131940606 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2 765 14920 172 24 33 chr4 23689514 23690356 -131939764 + L1VL2 LINE L1 3418 4273 -1613 2 765 687 154 0 0 chr4 23690356 23690466 -131939654 + B1_Mus1 SINE Alu 39 148 0 2 765 1299 44 0 0 chr4 23690466 23690624 -131939496 - L1_Mus1 LINE L1 -771 5796 5639 2 765 1577 117 23 26 chr4 23690624 23690888 -131939232 + L1Md_F2 LINE L1 6318 6580 -2 2 765 1813 139 8 70 chr4 23690944 23691067 -131939053 + L1VL2 LINE L1 4268 4381 -1496 2 765 1033 108 0 0 chr4 23691067 23691215 -131938905 - B1_Mus1 SINE Alu 0 148 1 2 765 1813 139 8 70 chr4 23691215 23691447 -131938673 + L1VL2 LINE L1 4382 4601 -1276 2 765 2860 51 0 0 chr4 23691449 23691799 -131938321 - L1_Mm LINE L1 -288 5595 5246 2 765 574 56 0 11 chr4 23691799 23691889 -131938231 + L1Md_F3 LINE L1 6482 6570 -14 2 765 3538 167 0 12 chr4 23691896 23691940 -131938180 + L1VL2 LINE L1 4595 4634 -1243 2 765 189 74 0 0 chr4 23691940 23691967 -131938153 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 765 3538 167 0 12 chr4 23691967 23692578 -131937542 + L1VL2 LINE L1 4635 5242 -635 2 765 22 35 0 0 chr4 23692589 23692618 -131937502 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 342 0 0 0 chr4 23692775 23692813 -131937307 + (A)n Simple_repeat Simple_repeat 1 38 0 2 765 330 321 56 60 chr4 23693130 23693415 -131936705 - L1MC LINE L1 -1460 4686 4403 2 765 26 64 0 0 chr4 23693524 23693571 -131936549 + AT_rich Low_complexity Low_complexity 1 47 0 2 765 259 208 13 0 chr4 23693631 23693708 -131936412 - Lx4B LINE L1 -6 7052 6975 2 765 24 32 0 0 chr4 23694387 23694418 -131935702 + AT_rich Low_complexity Low_complexity 1 31 0 2 765 768 307 19 5 chr4 23695055 23695268 -131934852 - Lx6 LINE L1 -354 7106 6891 2 765 534 205 18 9 chr4 23695290 23695403 -131934717 - L1_Mur3 LINE L1 -1 5879 5766 2 765 544 182 9 35 chr4 23695414 23695528 -131934592 + PB1D9 SINE Alu 9 119 -1 2 765 1091 28 14 0 chr4 23695528 23695670 -131934450 + (TAGA)n Simple_repeat Simple_repeat 2 145 0 2 765 1221 214 81 26 chr4 23695676 23695696 -131934424 - L1_Mur3 LINE L1 -119 5761 5747 2 765 3417 42 28 0 chr4 23695696 23696120 -131934000 + RLTR10C LTR ERVK 1 436 0 2 765 1221 214 81 26 chr4 23696120 23696372 -131933748 - L1_Mur3 LINE L1 -134 5746 5474 2 765 8181 35 0 0 chr4 23696732 23697701 -131932419 + L1Md_F2 LINE L1 5614 6582 0 2 765 742 276 47 5 chr4 23697777 23697970 -131932150 + B3 SINE B2 6 206 -10 2 765 872 107 35 18 chr4 23698046 23698217 -131931903 + RMER17B LTR ERVK 290 463 -495 2 765 23 0 0 0 chr4 23698755 23698778 -131931342 + AT_rich Low_complexity Low_complexity 1 23 0 2 765 347 313 15 7 chr4 23698918 23699053 -131931067 + Lx9 LINE L1 7294 7429 -215 2 765 482 83 14 0 chr4 23699103 23699175 -131930945 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 765 25 31 0 0 chr4 23702574 23702606 -131927514 + AT_rich Low_complexity Low_complexity 1 32 0 2 765 307 362 118 0 chr4 23702678 23702805 -131927315 - ID_B1 SINE B4 -2 222 81 2 765 192 234 0 0 chr4 23703751 23703798 -131926322 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 765 683 220 130 16 chr4 23703861 23704046 -131926074 - Lx8 LINE L1 -149 7324 7119 3 765 5128 154 40 6 chr4 23704409 23705354 -131924766 - Lx2 LINE L1 0 6997 6021 3 765 23 0 0 0 chr4 23706106 23706129 -131923991 + AT_rich Low_complexity Low_complexity 1 23 0 3 765 344 103 17 0 chr4 23706166 23706224 -131923896 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 765 3956 238 105 31 chr4 23706312 23707409 -131922711 - Lx5 LINE L1 0 7050 5873 3 765 666 313 139 26 chr4 23707482 23707784 -131922336 - MTE2b LTR MaLR -36 343 8 3 765 1201 109 46 0 chr4 23707876 23708050 -131922070 + B2_Mm2 SINE B2 2 183 -12 3 765 1364 51 10 10 chr4 23708050 23708247 -131921873 + L1Md_F2 LINE L1 6386 6582 0 3 765 22 0 0 0 chr4 23709361 23709383 -131920737 + AT_rich Low_complexity Low_complexity 1 22 0 3 765 2736 181 35 14 chr4 23711437 23711988 -131918132 - RLTR20B3 LTR ERVK -6 571 10 3 765 325 358 21 31 chr4 23712013 23712206 -131917914 - MLT2C2 LTR ERVL -250 214 24 3 765 2071 172 40 19 chr4 23712828 23713206 -131916914 - MTC LTR MaLR 0 421 36 3 765 1030 206 72 13 chr4 23713360 23713596 -131916524 + Lx4A LINE L1 6805 7054 -4 3 765 451 0 34 0 chr4 23713600 23713659 -131916461 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 3 765 522 0 0 0 chr4 23714419 23714477 -131915643 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 765 217 245 0 19 chr4 23716030 23716084 -131914036 + CT-rich Low_complexity Low_complexity 4 56 0 3 765 261 261 121 33 chr4 23716364 23716455 -131913665 + Charlie1a DNA MER1_type 517 615 -840 3 765 717 265 35 78 chr4 23716574 23716832 -131913288 + Lx7 LINE L1 7091 7337 -359 3 765 461 145 0 12 chr4 23717000 23717084 -131913036 - MYSERV16_I-int LTR ERVK -1207 1119 1037 3 765 241 307 0 26 chr4 23717084 23717161 -131912959 - RMER4B LTR ERVK -60 525 451 3 765 5245 206 30 2 chr4 23717174 23718354 -131911766 + MYSERV16_I-int LTR ERVK 1115 2326 0 3 765 2036 175 107 5 chr4 23718355 23718758 -131911362 + RLTR11A LTR ERVK 1 444 -84 3 765 1259 298 48 33 chr4 23719136 23719224 -131910896 - Lx6 LINE L1 -26 7434 7350 3 765 261 0 0 0 chr4 23719224 23719253 -131910867 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 765 207 88 0 0 chr4 23719253 23719286 -131910834 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 765 1259 286 184 35 chr4 23719286 23719794 -131910326 - Lx6 LINE L1 -111 7349 6754 3 765 207 100 0 0 chr4 23719794 23719824 -131910296 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 3 765 1082 248 92 41 chr4 23719824 23720019 -131910101 - Lx6 LINE L1 -707 6753 6555 3 765 1137 128 0 0 chr4 23720469 23720649 -131909471 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 765 213 360 169 13 chr4 23721576 23721801 -131908319 - B4 SINE B4 -27 265 6 3 765 27 0 0 0 chr4 23722121 23722148 -131907972 + AT_rich Low_complexity Low_complexity 1 27 0 3 765 284 324 69 16 chr4 23722756 23723001 -131907119 + L1MC1 LINE L1 4562 4819 -1327 3 95 1013 296 167 37 chr4 23723295 23724074 -131906046 + L1MC1 LINE L1 5454 6333 0 3 766 531 0 0 0 chr4 23725227 23725286 -131904834 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 766 1033 82 0 0 chr4 23725287 23725422 -131904698 - B1_Mus1 SINE Alu -12 136 2 3 766 336 120 0 0 chr4 23726203 23726253 -131903867 - RMER6A LTR ERVK 0 756 707 3 766 2188 195 146 22 chr4 23726260 23726957 -131903163 - RMER6C LTR ERVK 0 756 15 3 766 917 294 17 142 chr4 23727641 23728057 -131902063 - MTE2a LTR MaLR 0 379 16 3 766 492 81 0 0 chr4 23728974 23729048 -131901072 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 766 293 258 0 102 chr4 23729235 23729382 -131900738 - Lx7 LINE L1 -149 7547 7416 3 766 243 295 0 69 chr4 23729469 23729600 -131900520 + GA-rich Low_complexity Low_complexity 4 125 0 3 766 342 0 0 0 chr4 23730270 23730308 -131899812 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 3 766 5742 73 35 1 chr4 23730561 23731339 -131898781 + L1_Mus1 LINE L1 5763 6566 -1 3 766 570 297 82 5 chr4 23731414 23731610 -131898510 - B3 SINE B2 -1 215 5 3 766 2024 224 49 24 chr4 23734270 23734764 -131895356 - Lx9 LINE L1 -605 7039 6534 3 766 1889 211 108 22 chr4 23734729 23735219 -131894901 + Lx9 LINE L1 7091 7622 -22 3 766 2791 63 0 5 chr4 23735223 23735592 -131894528 + L1_Mus1 LINE L1 6201 6567 0 3 766 252 0 0 0 chr4 23735621 23735649 -131894471 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 3 766 22 0 0 0 chr4 23736687 23736709 -131893411 + AT_rich Low_complexity Low_complexity 1 22 0 3 766 219 136 0 43 chr4 23737005 23737051 -131893069 + (TTATA)n Simple_repeat Simple_repeat 1 44 0 3 766 519 17 0 0 chr4 23737119 23737179 -131892941 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 3 766 23 54 0 0 chr4 23738293 23738330 -131891790 + AT_rich Low_complexity Low_complexity 1 37 0 3 766 181 119 0 45 chr4 23739788 23739832 -131890288 + GA-rich Low_complexity Low_complexity 3 44 0 3 766 215 292 34 0 chr4 23739846 23739935 -131890185 + GA-rich Low_complexity Low_complexity 1 92 0 3 766 321 358 67 18 chr4 23740879 23741044 -131889076 - L1MC LINE L1 -2062 5820 5648 3 766 2913 165 9 36 chr4 23741065 23741623 -131888497 + Lx3B LINE L1 6426 6968 -5 3 766 446 333 97 0 chr4 23742270 23742414 -131887706 + Lx8 LINE L1 6476 6633 -840 3 766 743 226 10 51 chr4 23742421 23742617 -131887503 - RMER12 LTR ERVK -1131 191 4 3 766 514 316 141 12 chr4 23742634 23742890 -131887230 + Lx8 LINE L1 6958 7246 -227 3 766 222 211 0 0 chr4 23743191 23743229 -131886891 + polypurine Low_complexity Low_complexity 2 39 0 3 766 198 309 60 24 chr4 23743257 23743340 -131886780 - MIRb SINE MIR -169 99 14 3 766 280 174 43 0 chr4 23743629 23743675 -131886445 - ID4_ SINE ID -10 73 26 3 766 184 354 68 34 chr4 23745061 23745178 -131884942 - L2c LINE L2 -6 3381 3261 3 766 5984 53 5 3 chr4 23745910 23746667 -131883453 - L1Md_F2 LINE L1 -1 6581 5823 3 766 210 118 0 0 chr4 23746817 23746851 -131883269 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 766 241 367 38 0 chr4 23747701 23747780 -131882340 + Arthur1B DNA Tip100 28 109 -1116 3 766 1330 269 135 51 chr4 23748038 23748295 -131881825 + L1_Rod LINE L1 5037 5354 -493 3 766 572 206 0 24 chr4 23748295 23748459 -131881661 - Lx3A LINE L1 -3 6978 6819 3 766 1330 269 135 51 chr4 23748459 23748949 -131881171 + L1_Rod LINE L1 5355 5847 0 3 766 718 227 0 0 chr4 23749216 23749344 -131880776 + B1_Mus1 SINE Alu 1 128 -20 3 766 459 0 0 0 chr4 23749344 23749395 -131880725 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 766 1995 294 77 48 chr4 23749663 23750655 -131879465 + Lx9 LINE L1 6580 7599 -45 3 766 938 9 9 0 chr4 23751143 23751254 -131878866 + (TTC)n Simple_repeat Simple_repeat 3 114 0 3 766 773 11 11 0 chr4 23751428 23751522 -131878598 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 766 24 0 0 0 chr4 23753293 23753317 -131876803 + AT_rich Low_complexity Low_complexity 1 24 0 3 766 240 289 195 16 chr4 23755853 23755976 -131874144 - MIR SINE MIR -28 234 90 3 766 378 0 0 0 chr4 23758882 23758924 -131871196 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 3 766 340 161 0 24 chr4 23762528 23762611 -131867509 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 766 5842 154 39 6 chr4 23762660 23763628 -131866492 - L1_Mur2 LINE L1 -435 5442 4440 3 766 1125 62 0 0 chr4 23763628 23763774 -131866346 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 3 766 5842 154 39 6 chr4 23763774 23763858 -131866262 - L1_Mur2 LINE L1 -1438 4439 4356 3 766 8373 152 22 3 chr4 23763853 23765293 -131864827 + Lx2B LINE L1 5536 6999 -1 3 766 206 274 147 59 chr4 23765479 23765615 -131864505 - L3 LINE CR1 -3512 977 830 3 766 258 105 0 0 chr4 23766203 23766241 -131863879 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 766 1924 109 217 3 chr4 23766245 23766614 -131863506 - RLTR47_MM LTR ERV1 -84 448 1 3 766 452 350 19 19 chr4 23766711 23766982 -131863138 - MuRRS4-int LTR ERV1 -130 4933 4663 3 766 319 325 138 0 chr4 23768516 23768639 -131861481 - ID_B1 SINE B4 -5 219 80 3 766 213 264 0 216 chr4 23768689 23768805 -131861315 + B2_Mm1t SINE B2 35 125 -70 3 766 279 302 11 11 chr4 23768917 23769004 -131861116 - L1MEg LINE L1 -5624 460 374 3 766 306 106 0 0 chr4 23769459 23769506 -131860614 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3 766 212 200 22 0 chr4 23770089 23770134 -131859986 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 766 231 130 18 36 chr4 23770175 23770231 -131859889 + T-rich Low_complexity Low_complexity 4 58 0 3 766 21 71 0 0 chr4 23770377 23770419 -131859701 + AT_rich Low_complexity Low_complexity 1 42 0 3 766 414 39 0 0 chr4 23770830 23770882 -131859238 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 766 27 0 0 0 chr4 23771457 23771484 -131858636 + AT_rich Low_complexity Low_complexity 1 27 0 3 766 435 298 59 12 chr4 23773422 23773592 -131856528 - B4A SINE B4 -4 288 111 3 766 4842 117 11 16 chr4 23774164 23774910 -131855210 + Lx2 LINE L1 6253 6994 -3 3 766 423 0 0 0 chr4 23775139 23775186 -131854934 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 766 1064 59 0 0 chr4 23775186 23775322 -131854798 - B1_Mus2 SINE Alu -11 136 1 3 766 2252 234 173 74 chr4 23775650 23776597 -131853523 + RMER1C Other Other 300 1340 -2 3 766 3385 74 170 23 chr4 23776713 23777283 -131852837 + RLTR6_Mm LTR ERV1 1 654 0 3 766 794 248 72 5 chr4 23777296 23777491 -131852629 - B3 SINE B2 -7 209 2 3 766 21 71 0 0 chr4 23777753 23777795 -131852325 + AT_rich Low_complexity Low_complexity 1 42 0 3 766 339 264 142 43 chr4 23778481 23778643 -131851477 - MER58A DNA MER1_type -17 207 30 3 766 195 42 0 0 chr4 23778734 23778758 -131851362 + (T)n Simple_repeat Simple_repeat 1 24 0 3 766 41136 5 0 0 chr4 23778760 23785134 -131844986 - L1Md_A LINE L1 0 6582 208 3 766 324 0 0 0 chr4 23785249 23785285 -131844835 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 766 25 0 0 0 chr4 23785571 23785596 -131844524 + AT_rich Low_complexity Low_complexity 1 25 0 3 766 305 246 177 48 chr4 23785677 23785801 -131844319 + B1F2 SINE Alu 2 141 -8 3 766 3054 70 2 0 chr4 23786187 23786585 -131843535 + L1_Mus1 LINE L1 6167 6565 -2 4 766 941 158 117 0 chr4 23786974 23787221 -131842899 + Lx9 LINE L1 7368 7643 -1 4 766 285 167 0 0 chr4 23787370 23787424 -131842696 + GA-rich Low_complexity Low_complexity 1 54 0 4 766 341 205 26 18 chr4 23787781 23787895 -131842225 - RLTR42-int LTR ERVK -636 4886 4772 4 766 3399 191 195 16 chr4 23787898 23788872 -131841248 + Lx7 LINE L1 4746 5893 -1803 4 766 567 271 135 48 chr4 23788872 23789101 -131841019 - B4A SINE B4 -41 251 3 4 766 352 278 75 56 chr4 23789105 23789265 -131840855 - MLT2D LTR ERVL -189 225 63 4 766 1603 256 88 30 chr4 23789299 23789923 -131840197 + L1MC1 LINE L1 5413 6072 -261 4 766 387 311 86 51 chr4 23790072 23790329 -131839791 + ORR1E LTR MaLR 76 341 -18 4 766 1081 91 0 0 chr4 23790838 23790981 -131839139 + B1_Mus1 SINE Alu 1 143 -5 4 766 215 138 0 58 chr4 23790992 23791061 -131839059 + A-rich Low_complexity Low_complexity 1 65 0 4 766 186 71 0 0 chr4 23794001 23794029 -131836091 + (T)n Simple_repeat Simple_repeat 1 28 0 4 766 1196 28 7 0 chr4 23794031 23794174 -131835946 - B1_Mus2 SINE Alu 0 147 4 4 766 424 261 50 36 chr4 23794224 23794363 -131835757 + B1_Mur1 SINE Alu 2 142 -7 4 766 438 20 0 0 chr4 23794367 23794418 -131835702 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 4 766 2814 91 17 2 chr4 23794723 23795132 -131834988 + L1_Mus3 LINE L1 6218 6632 -6 4 766 524 66 26 0 chr4 23795537 23795613 -131834507 + (TTTTC)n Simple_repeat Simple_repeat 3 80 0 4 766 242 95 24 0 chr4 23795708 23795750 -131834370 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 766 951 344 52 23 chr4 23795953 23796468 -131833652 + Lx7 LINE L1 6584 7113 -583 4 766 665 340 89 24 chr4 23796494 23796865 -131833255 - Lx8 LINE L1 0 7473 7079 4 766 25 102 0 0 chr4 23799169 23799257 -131830863 + AT_rich Low_complexity Low_complexity 1 88 0 4 766 28 61 0 0 chr4 23799496 23799545 -131830575 + AT_rich Low_complexity Low_complexity 1 49 0 4 766 24 32 0 0 chr4 23799561 23799592 -131830528 + AT_rich Low_complexity Low_complexity 1 31 0 4 766 200 34 0 33 chr4 23800481 23800511 -131829609 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 766 661 227 32 5 chr4 23800520 23800706 -131829414 + Lx7 LINE L1 7506 7696 0 4 766 394 350 62 25 chr4 23800763 23801003 -131829117 - MIR SINE MIR -3 259 11 4 766 374 311 25 50 chr4 23801082 23801241 -131828879 - MER20 DNA MER1_type 0 219 65 4 766 4268 82 46 7 chr4 23801420 23802025 -131828095 + L1_Mus3 LINE L1 6010 6638 0 4 766 660 132 0 0 chr4 23803088 23803194 -131826926 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 766 270 326 14 92 chr4 23803437 23803579 -131826541 + MER58A DNA MER1_type 27 157 -67 4 766 929 226 37 28 chr4 23803618 23803832 -131826288 - B3 SINE B2 0 216 1 4 766 3309 130 103 97 chr4 23803959 23804391 -131825729 - RMER6A LTR ERVK 0 756 327 4 766 432 0 0 0 chr4 23804391 23804439 -131825681 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 766 3309 130 103 97 chr4 23804439 23804756 -131825364 - RMER6A LTR ERVK -430 326 3 4 766 378 380 36 0 chr4 23804806 23804943 -131825177 - RSINE1 SINE B4 -22 143 2 4 766 415 155 28 45 chr4 23804967 23805143 -131824977 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 4 766 1506 334 64 63 chr4 23805645 23806507 -131823613 + Lx8 LINE L1 6240 7102 -371 4 766 1202 60 0 24 chr4 23806911 23807081 -131823039 - L1_Mus2 LINE L1 0 6566 6401 4 766 307 316 96 62 chr4 23807095 23807335 -131822785 + RLTR17 LTR ERVK 188 435 -257 4 766 2306 241 58 33 chr4 23807705 23807866 -131822254 + Lx9 LINE L1 5051 5216 -631 4 766 680 23 12 0 chr4 23807866 23807952 -131822168 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 4 766 2306 247 60 35 chr4 23807952 23808757 -131821363 + Lx9 LINE L1 5217 6085 -1611 4 766 1474 290 88 59 chr4 23808875 23809502 -131820618 + Lx9 LINE L1 6359 7003 -641 4 766 2031 148 26 0 chr4 23809504 23809815 -131820305 - ORR1B1 LTR MaLR 0 394 76 4 766 3891 32 8 8 chr4 23809818 23810293 -131819827 - L1Md_F3 LINE L1 -14 6570 6096 4 766 2789 55 0 0 chr4 23810293 23810639 -131819481 + L1Md_F3 LINE L1 5527 5872 -11 4 766 8027 2 0 0 chr4 23810666 23811562 -131818558 - L1Md_A LINE L1 0 5883 4988 4 766 6031 3 0 0 chr4 23811562 23812230 -131817890 + L1Md_A LINE L1 5915 6582 0 4 766 21 0 0 0 chr4 23812230 23812251 -131817869 + AT_rich Low_complexity Low_complexity 1 21 0 4 766 389 72 3 0 chr4 23812251 23812308 -131817812 + L1Md_F3 LINE L1 5862 5919 -1131 4 766 2138 159 89 16 chr4 23812352 23812891 -131817229 - Lx4B LINE L1 -987 6071 5487 4 766 414 323 9 12 chr4 23812866 23813084 -131817036 + Lx8 LINE L1 7140 7487 -157 4 766 22 0 0 0 chr4 23813155 23813177 -131816943 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 425 286 71 10 chr4 23813638 23813836 -131816284 + L1MA9 LINE L1 5408 5617 -674 4 766 685 150 14 0 chr4 23813988 23814135 -131815985 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 4 766 3059 42 42 3 chr4 23814146 23814527 -131815593 + MTA_Mm LTR MaLR 1 396 0 4 766 5795 83 29 5 chr4 23814527 23815365 -131814755 + MTA_Mm-int LTR MaLR 1 848 -250 4 766 6872 36 2 0 chr4 23815365 23816192 -131813928 - L1Md_F3 LINE L1 -1 6583 5755 4 766 4068 175 87 131 chr4 23816192 23816667 -131813453 + MTA_Mm-int LTR MaLR 786 1258 0 4 766 3271 41 5 0 chr4 23816667 23817061 -131813059 + MTA_Mm LTR MaLR 1 396 0 4 766 821 10 10 0 chr4 23817083 23817181 -131812939 + (GA)n Simple_repeat Simple_repeat 2 100 0 4 766 242 232 98 0 chr4 23817210 23817292 -131812828 + L1MA9 LINE L1 5847 5936 -376 4 766 249 33 0 0 chr4 23817537 23817567 -131812553 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 4 766 1083 65 0 0 chr4 23817671 23817809 -131812311 - B1_Mus2 SINE Alu -9 138 1 4 766 6235 41 3 3 chr4 23818148 23818909 -131811211 - L1Md_F3 LINE L1 -1 6583 5823 4 766 180 77 0 0 chr4 23819510 23819536 -131810584 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 766 1126 266 93 36 chr4 23820365 23820697 -131809423 - MTE2a LTR MaLR -3 376 26 4 766 343 322 24 16 chr4 23820865 23820988 -131809132 - Tigger5 DNA MER2_type -2242 164 41 4 766 270 324 126 20 chr4 23822780 23822922 -131807198 - B3 SINE B2 -3 213 56 4 766 1986 141 12 3 chr4 23822922 23823243 -131806877 + ORR1A2 LTR MaLR 4 327 0 4 766 1848 265 23 5 chr4 23823319 23823747 -131806373 - Lx6 LINE L1 -16 7444 7009 4 766 548 286 95 52 chr4 23823756 23824081 -131806039 + Lx8 LINE L1 5859 6197 -1276 4 766 343 372 69 0 chr4 23824286 23824490 -131805630 + Lx8 LINE L1 6198 6415 -1058 4 766 430 323 79 0 chr4 23824495 23824659 -131805461 + Lx8 LINE L1 6724 6900 -573 4 766 536 309 143 14 chr4 23824659 23824936 -131805184 + Lx8 LINE L1 7025 7356 -117 4 766 252 0 0 0 chr4 23824936 23824964 -131805156 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 766 536 303 147 12 chr4 23824964 23825053 -131805067 + Lx8 LINE L1 7357 7466 -7 4 766 180 0 0 0 chr4 23825181 23825201 -131804919 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 766 229 276 52 0 chr4 23825386 23825444 -131804676 + ID SINE ID 13 73 -151 4 766 477 0 0 0 chr4 23825445 23825498 -131804622 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 766 3722 253 74 55 chr4 23826846 23826984 -131803136 - L1_Rod LINE L1 0 5847 5713 4 766 1389 61 0 0 chr4 23826984 23827164 -131802956 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 766 3722 253 74 55 chr4 23827164 23827954 -131802166 - L1_Rod LINE L1 -135 5712 4936 4 766 678 109 0 0 chr4 23827954 23828055 -131802065 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 766 3722 253 74 55 chr4 23828055 23828830 -131801290 - L1_Rod LINE L1 -912 4935 4110 4 766 426 281 14 49 chr4 23828835 23828977 -131801143 + Lx9 LINE L1 5838 5974 -1670 4 766 227 252 75 103 chr4 23829041 23829187 -131800933 + Lx9 LINE L1 6141 6282 -1362 4 766 245 158 63 38 chr4 23829216 23829295 -131800825 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 4 766 2289 195 32 111 chr4 23829323 23829987 -131800133 + RMER6A LTR ERVK 146 756 0 4 766 3164 240 111 17 chr4 23829989 23830821 -131799299 - Lx6 LINE L1 -568 6892 5983 4 766 2749 239 126 16 chr4 23830929 23831668 -131798452 - Lx6 LINE L1 -42 7418 6599 4 766 3165 235 62 23 chr4 23831651 23831868 -131798252 - Lx7 LINE L1 -1159 6537 6325 4 766 510 17 0 0 chr4 23831868 23831927 -131798193 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 766 378 0 0 0 chr4 23831928 23831970 -131798150 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 766 3165 235 62 23 chr4 23831970 23832612 -131797508 - Lx7 LINE L1 -1372 6324 5646 4 766 25 31 0 0 chr4 23832731 23832763 -131797357 + AT_rich Low_complexity Low_complexity 1 32 0 4 766 1178 81 0 0 chr4 23835065 23835213 -131794907 + B1_Mus1 SINE Alu 1 148 0 4 766 349 36 0 35 chr4 23835213 23835270 -131794850 + (CAAAAA)n Simple_repeat Simple_repeat 6 60 0 4 766 1664 224 63 25 chr4 23836166 23836639 -131793481 + Lx7 LINE L1 5925 6415 -1281 4 766 4205 243 48 78 chr4 23837074 23838180 -131791940 + Lx7 LINE L1 6411 7493 -203 4 766 207 0 0 0 chr4 23838180 23838203 -131791917 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 766 4205 243 48 78 chr4 23838203 23838297 -131791823 + Lx7 LINE L1 7494 7567 -129 4 766 1118 7 0 0 chr4 23838297 23838433 -131791687 - L1Md_A LINE L1 0 6582 6447 4 766 4205 243 48 78 chr4 23838433 23838556 -131791564 + Lx7 LINE L1 7568 7696 0 4 766 24 0 0 0 chr4 23840469 23840493 -131789627 + AT_rich Low_complexity Low_complexity 1 24 0 4 766 1797 155 104 8 chr4 23841249 23841614 -131788506 + RLTR9D LTR ERVK 1 400 -3 4 766 351 0 0 0 chr4 23841945 23841984 -131788136 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 766 205 279 0 0 chr4 23842222 23842283 -131787837 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 766 1063 232 0 5 chr4 23842350 23842562 -131787558 - MTC LTR MaLR -1 420 210 4 766 1005 181 198 4 chr4 23843293 23843531 -131786589 + Lx9 LINE L1 6781 7064 -580 4 766 702 241 92 17 chr4 23843526 23843699 -131786421 - Lx6 LINE L1 -1050 6410 6225 4 766 333 0 0 0 chr4 23843716 23843753 -131786367 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 766 6686 207 195 8 chr4 23843755 23845876 -131784244 - Lx6 LINE L1 -1316 6144 3621 4 766 1133 56 0 14 chr4 23846521 23846666 -131783454 + B1_Mus1 SINE Alu 1 143 -5 4 766 210 191 0 0 chr4 23846669 23846711 -131783409 + A-rich Low_complexity Low_complexity 4 45 0 4 766 22 56 0 0 chr4 23846976 23847012 -131783108 + AT_rich Low_complexity Low_complexity 1 36 0 4 766 6858 68 24 14 chr4 23847023 23847940 -131782180 + L1_Mus2 LINE L1 5635 6560 -6 4 766 295 349 129 8 chr4 23848682 23848922 -131781198 + L1MEg LINE L1 1 269 -5815 4 766 380 335 52 21 chr4 23848919 23849111 -131781009 + L1MEg LINE L1 373 570 -5514 4 766 233 276 37 52 chr4 23849124 23849258 -131780862 - L1MEg LINE L1 -4649 1435 1304 4 766 22 70 0 0 chr4 23849407 23849450 -131780670 + AT_rich Low_complexity Low_complexity 1 43 0 4 766 2590 289 200 35 chr4 23849634 23850712 -131779408 + Tigger1 DNA MER2_type 2 1239 -1179 4 766 5371 75 30 6 chr4 23850712 23851438 -131778682 + Lx3_Mus LINE L1 6266 7009 0 4 766 2590 289 200 35 chr4 23851438 23851791 -131778329 + Tigger1 DNA MER2_type 1240 1669 -749 4 766 705 248 40 15 chr4 23851866 23852067 -131778053 + B3 SINE B2 1 206 -10 4 766 546 324 61 32 chr4 23852204 23852746 -131777374 - L1_Rod LINE L1 -3577 2303 1753 5 766 518 257 46 8 chr4 23852733 23852996 -131777124 + L1_Mur3 LINE L1 3163 3435 -2445 5 766 7910 66 0 0 chr4 23853024 23854036 -131776084 + L1_Mus1 LINE L1 5558 6567 0 5 766 707 306 61 40 chr4 23854035 23854499 -131775621 + L1M2 LINE L1 3466 3959 -2184 5 766 432 0 0 0 chr4 23855018 23855066 -131775054 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 767 581 339 92 13 chr4 23855108 23855499 -131774621 - Lx9 LINE L1 -220 7424 7003 5 767 2151 163 15 52 chr4 23855652 23856059 -131774061 + ORR1B1 LTR MaLR 3 394 0 5 767 2544 206 70 40 chr4 23856687 23857283 -131772837 + RLTR17 LTR ERVK 1 614 -78 5 767 3653 177 30 26 chr4 23857312 23858048 -131772072 + Lx2B LINE L1 6259 6997 -3 5 767 237 197 0 0 chr4 23859903 23859964 -131770156 + (TTG)n Simple_repeat Simple_repeat 2 62 0 5 767 441 0 0 0 chr4 23860811 23860860 -131769260 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 767 570 316 79 9 chr4 23862117 23862433 -131767687 - L1_Mur1 LINE L1 -1085 4801 4464 5 767 1162 53 29 10 chr4 23863083 23863393 -131766727 + (TC)n Simple_repeat Simple_repeat 1 316 0 5 767 306 307 42 45 chr4 23863459 23863617 -131766503 + L1MA5 LINE L1 4853 5056 -1087 5 767 398 292 28 55 chr4 23863643 23863788 -131766332 + MTD LTR MaLR 271 411 -8 5 767 553 294 47 80 chr4 23863870 23864475 -131765645 + L1MA5 LINE L1 5329 5935 -365 5 767 570 100 0 0 chr4 23864485 23864585 -131765535 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 767 336 24 0 0 chr4 23864585 23864626 -131765494 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 767 24 0 0 0 chr4 23864865 23864889 -131765231 + AT_rich Low_complexity Low_complexity 1 24 0 5 767 406 321 35 58 chr4 23864930 23865191 -131764929 + LTR55 LTR ERV 2 256 -292 5 767 21 36 0 0 chr4 23866378 23866406 -131763714 + AT_rich Low_complexity Low_complexity 1 28 0 5 767 271 321 24 12 chr4 23868597 23868679 -131761441 - B1_Mur1 SINE Alu -6 143 61 5 767 22 0 0 0 chr4 23868724 23868746 -131761374 + AT_rich Low_complexity Low_complexity 1 22 0 5 767 317 159 16 0 chr4 23868804 23868867 -131761253 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 767 33878 45 15 15 chr4 23869570 23874058 -131756062 + L1Md_Gf LINE L1 289 4912 -974 5 767 232 200 47 62 chr4 23874058 23874122 -131755998 - RMER20A LTR ERVK -268 248 186 5 767 33878 45 15 15 chr4 23874122 23874777 -131755343 + L1Md_Gf LINE L1 4913 5589 -297 5 767 8353 35 1 0 chr4 23874778 23875772 -131754348 + L1Md_T LINE L1 5588 6582 0 5 767 208 259 36 36 chr4 23875785 23875869 -131754251 + (TCTCTG)n Simple_repeat Simple_repeat 6 89 0 5 767 1813 173 21 214 chr4 23877285 23877482 -131752638 + Lx4B LINE L1 6445 6620 -438 5 767 1238 109 31 22 chr4 23877482 23877707 -131752413 - L1Md_F2 LINE L1 -3 6579 6353 5 767 1813 173 21 214 chr4 23877707 23878089 -131752031 + Lx4B LINE L1 6621 6912 -146 5 767 740 231 78 25 chr4 23878139 23878343 -131751777 + B3 SINE B2 1 215 -1 5 767 21 0 0 0 chr4 23878856 23878877 -131751243 + AT_rich Low_complexity Low_complexity 1 21 0 5 767 224 167 11 35 chr4 23878981 23879050 -131751070 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 767 270 56 0 0 chr4 23879050 23879086 -131751034 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 767 224 167 11 35 chr4 23879086 23879103 -131751017 + (TA)n Simple_repeat Simple_repeat 1 17 0 5 767 1223 127 56 14 chr4 23879759 23879974 -131750146 - L1_Mus3 LINE L1 -5 6633 6410 5 767 1424 170 69 61 chr4 23880408 23880641 -131749479 + RMER17C LTR ERVK 1 230 -180 5 767 666 58 0 0 chr4 23880641 23880728 -131749392 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 767 1424 170 69 61 chr4 23880728 23880901 -131749219 + RMER17C LTR ERVK 231 410 0 5 767 408 266 11 11 chr4 23880995 23881090 -131749030 - PB1D10 SINE Alu -1 116 22 5 767 290 295 31 10 chr4 23881688 23881784 -131748336 + MLT1A1 LTR MaLR 311 408 0 5 767 898 135 39 0 chr4 23881823 23882001 -131748119 + Lx2B LINE L1 1529 1713 -4164 5 767 3127 95 2 0 chr4 23881996 23882416 -131747704 + Lx3A LINE L1 6292 6712 -269 5 767 17944 161 44 68 chr4 23882407 23882544 -131747576 + Lx2B LINE L1 1920 2051 -3826 5 767 414 0 0 0 chr4 23882544 23882590 -131747530 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 767 17944 161 44 68 chr4 23882590 23883222 -131746898 + Lx2B LINE L1 2052 2714 -3163 5 767 324 0 0 0 chr4 23883222 23883258 -131746862 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 767 17944 161 44 68 chr4 23883258 23884568 -131745552 + Lx2B LINE L1 2715 3921 -1956 5 767 1197 113 16 16 chr4 23884568 23884756 -131745364 + B2_Mm1t SINE B2 2 189 -4 5 767 17944 174 32 62 chr4 23884756 23885164 -131744956 + Lx2B LINE L1 3922 4327 -2673 5 767 358 182 0 0 chr4 23885164 23885219 -131744901 + RMER17B LTR ERVK 1 55 -903 5 767 17944 174 32 62 chr4 23885219 23887882 -131742238 + Lx2B LINE L1 4328 6982 -18 5 767 255 255 0 0 chr4 23887945 23887996 -131742124 + L2b LINE L2 3325 3375 0 5 767 239 293 48 39 chr4 23888065 23888168 -131741952 + MIRb SINE MIR 135 238 -30 5 767 297 0 0 0 chr4 23888317 23888350 -131741770 + (T)n Simple_repeat Simple_repeat 1 33 0 5 767 210 376 45 9 chr4 23888511 23888621 -131741499 + MIR SINE MIR 23 136 -72 5 767 685 222 94 0 chr4 23889233 23889413 -131740707 + L1_Mur3 LINE L1 1259 1455 -4425 5 767 10806 173 39 66 chr4 23889789 23890667 -131739453 + L1_Mur3 LINE L1 2282 3063 -2817 5 767 902 113 13 0 chr4 23890667 23890817 -131739303 + (AGGGGG)n Simple_repeat Simple_repeat 1 152 0 5 767 10806 173 39 66 chr4 23890817 23892630 -131737490 + L1_Mur3 LINE L1 3064 4885 -995 5 767 2589 252 48 50 chr4 23892630 23892736 -131737384 + Lx6 LINE L1 6687 6790 -670 5 767 2503 194 92 51 chr4 23892736 23893323 -131736797 + RMER19C LTR ERVK 1 611 0 5 767 2589 252 48 50 chr4 23893323 23893416 -131736704 + Lx6 LINE L1 6791 6881 -579 5 767 441 0 0 0 chr4 23893416 23893465 -131736655 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 767 276 120 0 0 chr4 23893469 23893519 -131736601 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 5 767 2589 252 48 50 chr4 23893519 23894055 -131736065 + Lx6 LINE L1 6882 7418 -42 5 767 275 416 92 13 chr4 23895127 23895595 -131734525 - L3 LINE CR1 -857 3632 3128 5 767 21 71 0 0 chr4 23898542 23898584 -131731536 + AT_rich Low_complexity Low_complexity 1 42 0 5 767 803 360 32 53 chr4 23898682 23899151 -131730969 + MT2A LTR ERVL 5 463 -70 5 767 392 105 0 13 chr4 23899152 23899229 -131730891 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 767 180 0 0 0 chr4 23899229 23899249 -131730871 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 767 391 133 0 0 chr4 23899296 23899356 -131730764 + ORR1D1 LTR MaLR 315 374 0 5 767 3865 168 45 17 chr4 23899455 23900206 -131729914 + Lx LINE L1 5881 6652 -2 5 767 24 32 0 0 chr4 23900248 23900279 -131729841 + AT_rich Low_complexity Low_complexity 1 31 0 5 767 12706 212 56 50 chr4 23900399 23901864 -131728256 + L1_Mur3 LINE L1 297 1916 -3964 5 767 180 0 0 0 chr4 23901864 23901884 -131728236 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 767 12706 189 81 58 chr4 23901884 23904207 -131725913 + L1_Mur3 LINE L1 1917 4224 -1656 5 767 906 56 0 0 chr4 23904207 23904332 -131725788 + (GA)n Simple_repeat Simple_repeat 2 126 0 5 767 12706 189 81 58 chr4 23904332 23905031 -131725089 + L1_Mur3 LINE L1 4225 4858 -1022 5 767 1663 82 0 0 chr4 23905025 23905258 -131724862 + L1_Mm LINE L1 4122 4354 -1529 5 767 8308 34 2 1 chr4 23905258 23906244 -131723876 + L1Md_F2 LINE L1 5593 6579 -3 5 767 663 13 0 0 chr4 23906258 23906334 -131723786 + (GAAA)n Simple_repeat Simple_repeat 3 78 0 5 767 385 223 96 10 chr4 23906334 23906438 -131723682 + Lx7 LINE L1 7150 7262 -434 5 767 974 99 43 0 chr4 23906489 23906630 -131723490 - B1_Mus1 SINE Alu 0 148 2 5 767 214 87 21 21 chr4 23906697 23906744 -131723376 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 767 292 185 9 36 chr4 23907916 23908028 -131722092 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 767 247 187 25 62 chr4 23908037 23908117 -131722003 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 5 767 316 166 30 35 chr4 23908117 23908286 -131721834 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 767 362 130 41 32 chr4 23908302 23908551 -131721569 + (TG)n Simple_repeat Simple_repeat 1 251 0 5 767 4831 59 68 2 chr4 23908848 23909490 -131720630 - L1_Mus1 LINE L1 -14 6553 5869 5 767 252 328 89 16 chr4 23913200 23913324 -131716796 + MamSINE1 SINE tRNA 60 192 -98 5 767 1239 195 80 8 chr4 23915157 23915421 -131714699 + Lx5 LINE L1 6747 7029 -21 5 767 518 54 0 13 chr4 23915423 23915498 -131714622 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 5 767 971 95 73 0 chr4 23915633 23915770 -131714350 + B1_Mus1 SINE Alu 1 147 -1 5 767 642 258 129 47 chr4 23916261 23916493 -131713627 + ORR1D2 LTR MaLR 1 251 -119 5 767 312 166 41 52 chr4 23916499 23916671 -131713449 + CT-rich Low_complexity Low_complexity 6 175 0 5 767 303 91 36 18 chr4 23916676 23916732 -131713388 + ORR1D2 LTR MaLR 306 362 -8 5 767 483 18 0 0 chr4 23917240 23917296 -131712824 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 767 261 0 0 0 chr4 23917296 23917324 -131712796 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 767 24 0 0 0 chr4 23917529 23917553 -131712567 + AT_rich Low_complexity Low_complexity 1 24 0 5 767 230 198 115 69 chr4 23918147 23918234 -131711886 - MER53 DNA hAT -17 176 86 5 767 189 0 0 0 chr4 23919730 23919751 -131710369 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 767 436 321 41 31 chr4 23919859 23920055 -131710065 - B3A SINE B2 0 198 1 5 767 32 0 0 0 chr4 23920064 23920096 -131710024 + AT_rich Low_complexity Low_complexity 1 32 0 5 767 180 77 0 0 chr4 23920929 23920955 -131709165 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5 767 588 226 17 17 chr4 23922768 23922885 -131707235 - B1_Mur1 SINE Alu -1 148 32 5 767 771 51 0 56 chr4 23923005 23923130 -131706990 - L1Md_A LINE L1 0 6582 6465 5 767 4529 44 0 0 chr4 23923130 23923674 -131706446 + L1Md_T LINE L1 5909 6452 -130 5 767 402 115 0 0 chr4 23924290 23924351 -131705769 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 5 767 294 299 99 95 chr4 23925236 23925458 -131704662 + MER58A DNA MER1_type 1 223 -1 5 767 1970 320 50 40 chr4 23925712 23926715 -131703405 + Lx8 LINE L1 6024 7036 -437 5 767 241 259 12 0 chr4 23926831 23926912 -131703208 + T-rich Low_complexity Low_complexity 3 84 0 5 767 1288 86 19 32 chr4 23927032 23927248 -131702872 - L1_Mus3 LINE L1 -18 6620 6408 5 767 1415 76 0 0 chr4 23927248 23927432 -131702688 + L1_Mus3 LINE L1 6117 6300 -336 5 767 225 198 157 65 chr4 23927433 23927541 -131702579 - MTC-int LTR MaLR -896 362 245 5 767 479 397 6 6 chr4 23927494 23927669 -131702451 + ID_B1 SINE B4 16 190 -34 5 767 34 89 0 0 chr4 23927711 23927801 -131702319 + AT_rich Low_complexity Low_complexity 1 90 0 6 767 5112 2 0 0 chr4 23927918 23928484 -131701636 + L1Md_A LINE L1 6017 6582 0 6 767 247 359 25 105 chr4 23928709 23928871 -131701249 + B1F2 SINE Alu 1 149 0 6 767 197 103 16 65 chr4 23929011 23929073 -131701047 + (TTATA)n Simple_repeat Simple_repeat 3 61 0 6 767 1014 71 19 6 chr4 23929216 23929372 -131700748 + L1_Mus3 LINE L1 6474 6631 -7 6 767 31 0 0 0 chr4 23930741 23930772 -131699348 + AT_rich Low_complexity Low_complexity 1 31 0 6 767 441 0 0 0 chr4 23931428 23931477 -131698643 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 767 574 302 73 4 chr4 23931610 23931869 -131698251 - MER33 DNA MER1_type -41 283 7 6 767 22 0 0 0 chr4 23934040 23934062 -131696058 + AT_rich Low_complexity Low_complexity 1 22 0 6 767 221 128 21 0 chr4 23935336 23935383 -131694737 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 767 383 330 179 29 chr4 23935523 23936119 -131694001 + L1MC4 LINE L1 1324 2009 -4206 6 767 6364 60 5 32 chr4 23937068 23938096 -131692024 - L1_Mus1 LINE L1 -162 6405 5407 6 767 235 320 41 0 chr4 23938479 23938576 -131691544 - L1MC4 LINE L1 -1111 6931 6831 6 767 501 330 76 15 chr4 23939328 23939799 -131690321 + L1MC4 LINE L1 6752 7251 -791 6 767 698 111 4 28 chr4 23939788 23939922 -131690198 + L1_Mus2 LINE L1 6152 6261 -321 6 767 299 235 41 49 chr4 23939924 23940063 -131690057 + L1MA6 LINE L1 5966 6092 -79 6 767 322 238 47 54 chr4 23940087 23940216 -131689904 - RSINE1 SINE B4 -30 135 8 6 767 356 324 48 0 chr4 23940282 23940387 -131689733 - RSINE1 SINE B4 -39 126 17 6 767 1129 277 20 62 chr4 23941045 23941566 -131688554 + Lx6 LINE L1 5978 6734 -726 6 767 258 95 0 0 chr4 23941566 23941608 -131688512 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 6 767 1129 244 21 78 chr4 23941608 23941637 -131688483 + Lx6 LINE L1 6735 6741 -719 6 767 915 128 0 0 chr4 23941637 23941989 -131688131 + (GA)n Simple_repeat Simple_repeat 1 352 0 6 767 1253 292 32 45 chr4 23941989 23942579 -131687541 + Lx6 LINE L1 6479 7311 -149 6 767 29 0 0 0 chr4 23942628 23942657 -131687463 + AT_rich Low_complexity Low_complexity 1 29 0 6 767 783 245 39 14 chr4 23944688 23944895 -131685225 - B3 SINE B2 -4 212 1 6 767 948 52 80 7 chr4 23945028 23945165 -131684955 + B1_Mus1 SINE Alu 2 148 0 6 767 353 304 19 97 chr4 23947436 23947683 -131682437 + MIRb SINE MIR 35 251 -11 6 767 31 0 0 0 chr4 23948604 23948635 -131681485 + AT_rich Low_complexity Low_complexity 1 31 0 6 767 419 356 15 0 chr4 23948722 23948857 -131681263 + B4A SINE B4 5 141 -151 6 767 465 19 0 0 chr4 23949051 23949105 -131681015 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 767 850 161 0 11 chr4 23949121 23949303 -131680817 + CT-rich Low_complexity Low_complexity 1 180 0 6 767 200 308 39 0 chr4 23949326 23949378 -131680742 - MIRb SINE MIR -177 91 38 6 767 33 66 0 0 chr4 23949723 23949784 -131680336 + AT_rich Low_complexity Low_complexity 1 61 0 6 767 565 265 30 65 chr4 23950837 23950988 -131679132 - Lx7 LINE L1 -1412 6284 6132 6 767 2830 57 5 63 chr4 23950988 23951403 -131678717 - L1_Mus2 LINE L1 0 6566 6176 6 767 565 265 30 65 chr4 23951403 23951481 -131678639 - Lx7 LINE L1 -1565 6131 6063 6 767 253 253 12 12 chr4 23951519 23951603 -131678517 + Lx7 LINE L1 7598 7681 -15 6 767 339 25 0 0 chr4 23951982 23952022 -131678098 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 767 244 129 47 31 chr4 23952025 23952089 -131678031 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 6 767 8055 47 1 0 chr4 23952581 23954010 -131676110 - L1Md_F2 LINE L1 0 6582 5151 6 767 404 360 79 0 chr4 23955364 23955503 -131674617 - B3A SINE B2 -21 177 28 6 767 513 182 0 0 chr4 23955841 23955940 -131674180 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 767 293 317 29 10 chr4 23955987 23956089 -131674031 - Lx7 LINE L1 -400 7296 7193 6 767 859 277 30 23 chr4 23956151 23956413 -131673707 - Lx6 LINE L1 -169 7291 7028 6 767 510 223 16 16 chr4 23956750 23956873 -131673247 - L1M2 LINE L1 -699 5598 5476 6 767 247 222 28 0 chr4 23957013 23957085 -131673035 + A-rich Low_complexity Low_complexity 2 75 0 6 767 2352 279 88 41 chr4 23957103 23957900 -131672220 - Lx7 LINE L1 -419 7277 6444 6 767 614 243 94 35 chr4 23957907 23958163 -131671957 + L1_Mur3 LINE L1 4763 5033 -847 6 767 892 312 98 35 chr4 23958169 23958820 -131671300 - L1M2 LINE L1 -440 5407 4716 6 767 58 65 0 0 chr4 23959637 23959744 -131670376 + AT_rich Low_complexity Low_complexity 1 107 0 6 767 1831 100 49 14 chr4 23962741 23963025 -131667095 - L1Md_F2 LINE L1 -12 6570 6277 6 767 204 216 0 0 chr4 23963482 23963533 -131666587 + T-rich Low_complexity Low_complexity 1 51 0 6 767 369 287 155 19 chr4 23963649 23963752 -131666368 - PB1 SINE Alu -4 123 7 6 767 211 148 32 32 chr4 23964247 23964310 -131665810 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 767 24 0 0 0 chr4 23964522 23964546 -131665574 + AT_rich Low_complexity Low_complexity 1 24 0 6 767 306 0 0 0 chr4 23964646 23964680 -131665440 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 6 767 2995 114 21 33 chr4 23964763 23965244 -131664876 + MT2C_Mm LTR ERVL 1 475 0 6 767 1691 178 61 7 chr4 23966440 23966734 -131663386 + Lx4A LINE L1 6709 7018 -40 6 767 1212 98 77 0 chr4 23966749 23966932 -131663188 + Lx3A LINE L1 6230 6426 -555 6 767 4857 107 14 4 chr4 23966932 23967658 -131662462 + L1_Mus4 LINE L1 5904 6636 0 6 767 5172 101 3 1 chr4 23967658 23968375 -131661745 + Lx3A LINE L1 6248 6965 -16 6 767 1444 14 5 5 chr4 23968381 23968591 -131661529 + (TAGA)n Simple_repeat Simple_repeat 1 210 0 6 767 23 0 0 0 chr4 23968622 23968645 -131661475 + AT_rich Low_complexity Low_complexity 1 23 0 6 767 914 272 65 31 chr4 23968645 23969032 -131661088 + L1M2 LINE L1 3511 3910 -2233 6 767 470 322 44 46 chr4 23969036 23969469 -131660651 + L1M2 LINE L1 4813 5244 -899 6 767 30229 113 9 7 chr4 23969520 23975351 -131654769 - L1_Mus1 LINE L1 -1 6566 725 6 767 414 282 49 0 chr4 23975351 23975470 -131654650 - L1_Mus1 LINE L1 -5804 812 691 6 767 4601 40 16 0 chr4 23975470 23976027 -131654093 + L1Md_T LINE L1 6017 6582 0 6 767 414 282 49 0 chr4 23976027 23976049 -131654071 - L1_Mus1 LINE L1 -5926 690 665 6 767 464 252 12 99 chr4 23976158 23976330 -131653790 - L1VL1 LINE L1 -6029 393 237 6 767 349 86 27 41 chr4 23976374 23976447 -131653673 - L1Md_A LINE L1 0 6582 6511 6 767 555 314 72 0 chr4 23976474 23976668 -131653452 + B3 SINE B2 1 208 -8 6 767 1434 267 55 87 chr4 23977596 23978568 -131651552 + Lx9 LINE L1 826 1754 -4093 6 767 2022 252 90 105 chr4 23978568 23979889 -131650231 + Lx9 LINE L1 3894 5194 -653 6 767 6034 83 11 4 chr4 23979889 23980712 -131649408 + L1_Mus2 LINE L1 5738 6566 0 6 767 229 330 81 47 chr4 23980712 23980781 -131649339 + L1MC LINE L1 5262 5319 -827 6 767 2885 169 25 2 chr4 23980787 23981316 -131648804 - Lx6 LINE L1 -239 5641 5101 6 767 6755 235 45 23 chr4 23981314 23982918 -131647202 + Lx6 LINE L1 5633 7271 -189 6 767 201 74 0 0 chr4 23982941 23982968 -131647152 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 6 767 44 0 0 0 chr4 23983326 23983370 -131646750 + AT_rich Low_complexity Low_complexity 1 44 0 6 767 1307 268 89 48 chr4 23983809 23984577 -131645543 + Lx9 LINE L1 5445 6400 -1244 6 767 198 0 0 0 chr4 23984577 23984599 -131645521 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 767 1154 268 248 32 chr4 23984599 23985360 -131644760 + Lx9 LINE L1 6401 7326 -318 6 95 5693 85 27 4 chr4 23985381 23986185 -131643935 - L1_Mus3 LINE L1 0 6638 5816 6 768 4567 130 4 0 chr4 23986187 23986886 -131643234 + L1_Mus3 LINE L1 5109 5810 -73 6 768 510 31 0 0 chr4 23987027 23987091 -131643029 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 768 199 292 46 0 chr4 23987435 23987500 -131642620 + L4 LINE RTE 1675 1742 -287 6 768 186 280 16 123 chr4 23987769 23987891 -131642229 + MER5B DNA MER1_type 68 176 -2 6 768 197 224 0 17 chr4 23988517 23988576 -131641544 + GA-rich Low_complexity Low_complexity 4 61 0 6 768 269 61 0 0 chr4 23988576 23988609 -131641511 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 6 768 944 155 11 0 chr4 23988609 23988783 -131641337 + GA-rich Low_complexity Low_complexity 3 178 0 6 768 241 356 10 0 chr4 23988905 23989009 -131641111 - MIR SINE MIR -105 157 53 6 768 567 218 0 0 chr4 23989780 23989922 -131640198 + (TG)n Simple_repeat Simple_repeat 1 142 0 6 768 1206 306 49 31 chr4 23989931 23990518 -131639602 - Lx7 LINE L1 -1510 6186 5589 6 768 540 164 0 119 chr4 23990563 23990598 -131639522 - Lx9 LINE L1 -1 7643 7612 6 768 4640 128 22 29 chr4 23990598 23991413 -131638707 - RMER17D2 LTR ERVK 0 809 1 6 768 540 164 0 119 chr4 23991413 23991536 -131638584 - Lx9 LINE L1 -33 7611 7504 6 768 1912 343 48 22 chr4 23991597 23992531 -131637589 + Lx8 LINE L1 6349 7306 -167 6 768 1081 240 62 116 chr4 23992555 23992960 -131637160 + ORR1C2 LTR MaLR 2 384 0 6 768 279 0 0 0 chr4 23992965 23992996 -131637124 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 768 3328 32 2 0 chr4 23993072 23993473 -131636647 - L1Md_A LINE L1 0 6582 6181 6 768 731 34 0 0 chr4 23993473 23993561 -131636559 + L1Md_A LINE L1 6102 6189 -393 6 768 6469 127 28 20 chr4 23993557 23995088 -131635032 - Lx LINE L1 -8 6646 5106 6 768 4557 172 39 188 chr4 23995081 23995738 -131634382 - Lx LINE L1 -3182 2704 2305 6 768 554 0 15 0 chr4 23995738 23995804 -131634316 + (TAA)n Simple_repeat Simple_repeat 3 69 0 6 768 5469 88 72 52 chr4 23995804 23996379 -131633741 - Lx LINE L1 -1606 2308 1750 6 768 4902 30 1 68 chr4 23996379 23997028 -131633092 - L1Md_A LINE L1 0 6582 5977 6 768 5469 88 72 52 chr4 23997028 23997430 -131632690 - Lx LINE L1 -2165 1749 1313 6 768 3131 172 17 48 chr4 23997423 23998027 -131632093 - L1VL2 LINE L1 -5655 680 96 6 768 406 187 53 0 chr4 23998552 23998627 -131631493 + MT2A LTR ERVL 1 79 -454 6 768 702 143 0 20 chr4 23998629 23998779 -131631341 + CT-rich Low_complexity Low_complexity 3 149 0 6 768 1269 298 143 45 chr4 23998781 23999564 -131630556 - Lx6 LINE L1 -2 7458 6249 6 768 277 292 151 0 chr4 23999566 23999672 -131630448 + Lx6 LINE L1 6092 6213 -1247 6 768 1869 94 112 0 chr4 23999714 24000000 -131630120 + Lx LINE L1 5911 6228 -426 6 768 2253 148 72 3 chr4 24000000 24000276 -131629844 + Lx LINE L1 6229 6532 -122 1 768 198 0 0 0 chr4 24000276 24000298 -131629822 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 2 768 2253 148 72 3 chr4 24000298 24000408 -131629712 + Lx LINE L1 6533 6641 -13 1 768 22 35 0 0 chr4 24000408 24000437 -131629683 + AT_rich Low_complexity Low_complexity 1 29 0 3 768 182 37 37 0 chr4 24001432 24001459 -131628661 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 4 768 557 296 4 116 chr4 24001501 24001726 -131628394 + B3A SINE B2 9 208 -8 5 768 477 237 0 28 chr4 24001727 24001909 -131628211 + (CATA)n Simple_repeat Simple_repeat 4 180 0 6 768 928 254 136 37 chr4 24002747 24003070 -131627050 + ORR1D2 LTR MaLR 3 357 -13 7 768 347 171 13 0 chr4 24003249 24003325 -131626795 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 768 608 85 25 17 chr4 24004629 24004748 -131625372 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 9 768 430 371 114 17 chr4 24005279 24005578 -131624542 - MLT1I LTR MaLR -17 394 67 1 768 777 139 16 0 chr4 24005919 24006041 -131624079 - RLTR15 LTR ERVK 0 359 236 1 768 1053 146 236 8 chr4 24006041 24006282 -131623838 + Lx2 LINE L1 6700 6995 -2 1 768 1142 188 39 9 chr4 24006292 24006523 -131623597 - RLTR15 LTR ERVK -121 238 1 1 768 284 337 10 30 chr4 24006523 24006624 -131623496 - ORR1E LTR MaLR -259 100 2 1 768 789 95 0 0 chr4 24006959 24007075 -131623045 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 768 31 68 0 0 chr4 24007532 24007591 -131622529 + AT_rich Low_complexity Low_complexity 1 59 0 1 768 236 203 71 14 chr4 24007662 24007732 -131622388 + A-rich Low_complexity Low_complexity 2 75 0 1 768 251 222 0 0 chr4 24007732 24007786 -131622334 - Lx7 LINE L1 -393 7303 7250 1 768 33 25 0 0 chr4 24008521 24008561 -131621559 + AT_rich Low_complexity Low_complexity 1 40 0 1 768 230 363 33 40 chr4 24008642 24008794 -131621326 - MIRb SINE MIR -2 266 116 1 768 3529 144 5 2 chr4 24008951 24009506 -131620614 - Lx2A LINE L1 -3 7005 6449 2 768 479 347 85 42 chr4 24009513 24009820 -131620300 - MLT1E2 LTR MaLR -6 621 302 2 768 218 286 28 14 chr4 24010128 24010199 -131619921 - MIRb SINE MIR -4 264 193 2 768 27 62 0 0 chr4 24010406 24010454 -131619666 + AT_rich Low_complexity Low_complexity 1 48 0 2 768 519 301 77 72 chr4 24010709 24010931 -131619189 - B4A SINE B4 -68 224 2 2 768 492 99 0 0 chr4 24010935 24011006 -131619114 + (TTA)n Simple_repeat Simple_repeat 1 71 0 2 768 304 327 40 0 chr4 24011006 24011107 -131619013 - PB1D10 SINE Alu -12 105 1 2 768 224 309 29 0 chr4 24011109 24011177 -131618943 - MIRc SINE MIR -114 154 85 2 768 37664 45 1 3 chr4 24011487 24017873 -131612247 - L1Md_T LINE L1 0 6585 113 2 768 2008 203 91 18 chr4 24017911 24018063 -131612057 - RMER6C LTR ERVK -223 467 378 2 768 657 38 0 0 chr4 24018063 24018143 -131611977 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 768 369 0 0 0 chr4 24018143 24018183 -131611937 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 768 2008 176 104 7 chr4 24018183 24018520 -131611600 - RMER6C LTR ERVK -313 377 4 2 768 21 0 0 0 chr4 24018777 24018798 -131611322 + AT_rich Low_complexity Low_complexity 1 21 0 3 768 213 314 91 29 chr4 24020064 24020191 -131609929 - MIRm SINE MIR -45 163 31 3 768 2047 125 28 21 chr4 24020297 24020624 -131609496 + ORR1A4 LTR MaLR 1 329 0 3 768 459 283 99 88 chr4 24021011 24021384 -131608736 - RLTR16 LTR ERVK -250 442 13 3 768 348 91 0 0 chr4 24021684 24021750 -131608370 + L1_Mus4 LINE L1 6567 6632 -4 3 768 1162 252 77 39 chr4 24022198 24022561 -131607559 + MTEa LTR MaLR 1 377 -2 3 768 348 269 9 19 chr4 24022896 24023002 -131607118 + MLT1A1 LTR MaLR 304 408 0 3 768 599 90 10 0 chr4 24025016 24025116 -131605004 + (CATA)n Simple_repeat Simple_repeat 2 102 0 3 768 588 84 0 0 chr4 24025141 24025224 -131604896 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 4 768 432 271 59 0 chr4 24025254 24025372 -131604748 + PB1 SINE Alu 1 125 -2 4 768 832 283 39 25 chr4 24025822 24026105 -131604015 + Lx8 LINE L1 6898 7184 -289 4 768 239 302 123 0 chr4 24026455 24026561 -131603559 + MLT2D LTR ERVL 1 119 -437 4 768 327 327 45 26 chr4 24026593 24026747 -131603373 - RSINE1 SINE B4 -6 159 3 4 768 299 281 71 20 chr4 24026757 24026855 -131603265 + MLT2D LTR ERVL 109 211 -203 4 768 6890 53 0 5 chr4 24027023 24027879 -131602241 - L1Md_F2 LINE L1 0 6582 5731 4 768 804 152 30 6 chr4 24027880 24028046 -131602074 + Lx3B LINE L1 6797 6966 -7 4 768 26 0 0 0 chr4 24028048 24028074 -131602046 + AT_rich Low_complexity Low_complexity 1 26 0 4 768 798 278 22 0 chr4 24028729 24028909 -131601211 + B3A SINE B2 1 184 -14 4 768 501 205 0 0 chr4 24028924 24029051 -131601069 + (CA)n Simple_repeat Simple_repeat 2 128 0 4 768 23 78 0 0 chr4 24031683 24031734 -131598386 + AT_rich Low_complexity Low_complexity 1 51 0 5 768 795 21 0 0 chr4 24032485 24032578 -131597542 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 768 2491 275 22 3 chr4 24033105 24033682 -131596438 + Lx6 LINE L1 6815 7402 -58 5 768 799 109 142 7 chr4 24033765 24033913 -131596207 + Lx2A LINE L1 6841 7008 0 5 768 17317 218 107 53 chr4 24033918 24036910 -131593210 + L1_Mus2 LINE L1 220 2942 -2935 5 768 1079 97 0 0 chr4 24036910 24037055 -131593065 + B1_Mus2 SINE Alu 1 145 -2 5 768 243 0 0 0 chr4 24037055 24037082 -131593038 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 768 17317 157 108 6 chr4 24037082 24040126 -131589994 + L1_Mus2 LINE L1 2943 6566 0 5 768 526 136 0 11 chr4 24040187 24040276 -131589844 + B1_Mus2 SINE Alu 49 136 -11 5 768 297 0 0 0 chr4 24040276 24040309 -131589811 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 5 768 2883 181 6 0 chr4 24040310 24040834 -131589286 + L1_Mur3 LINE L1 5288 5814 -66 5 768 1776 149 61 9 chr4 24040834 24041160 -131588960 + Lx4A LINE L1 6710 7052 -6 6 768 59 46 0 0 chr4 24041167 24041254 -131588866 + AT_rich Low_complexity Low_complexity 1 87 0 6 768 3840 221 33 62 chr4 24041254 24042196 -131587924 + Lx7 LINE L1 6754 7668 -28 6 768 2282 196 20 5 chr4 24042200 24042646 -131587474 - Lx5 LINE L1 -744 6306 5854 6 768 3684 186 37 18 chr4 24042646 24043372 -131586748 + Lx5 LINE L1 6311 7050 0 6 768 237 83 56 0 chr4 24043380 24043416 -131586704 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 6 768 633 127 14 34 chr4 24043416 24043563 -131586557 + GA-rich Low_complexity Low_complexity 2 145 0 6 768 365 0 0 22 chr4 24043663 24043709 -131586411 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 768 354 212 20 68 chr4 24043928 24044075 -131586045 + Lx5 LINE L1 867 1006 -6722 6 768 2496 36 3 21 chr4 24044107 24044444 -131585676 + RLTR10 LTR ERVK 1 331 -59 6 768 672 33 0 0 chr4 24044446 24044538 -131585582 + RLTR10 LTR ERVK 262 353 -37 6 768 17094 19 1 0 chr4 24044538 24046527 -131583593 + L1Md_T LINE L1 3597 5586 -297 7 768 8930 6 0 2 chr4 24046527 24047525 -131582595 + L1Md_T LINE L1 5587 6582 0 7 768 336 123 39 24 chr4 24047528 24047611 -131582509 + RLTR10 LTR ERVK 301 387 -3 6 768 16016 30 7 30 chr4 24047621 24049611 -131580509 + RLTR10-int LTR ERVK 41 1984 -3 6 768 2815 31 2 170 chr4 24049613 24050078 -131580042 + RLTR10 LTR ERVK 1 387 -3 6 768 366 271 76 28 chr4 24050083 24050227 -131579893 + Lx6 LINE L1 7287 7437 -23 7 768 1285 188 118 2 chr4 24050393 24050975 -131579145 + Lx5 LINE L1 939 1587 -4293 6 768 450 0 0 0 chr4 24050989 24051039 -131579081 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 768 2803 183 35 23 chr4 24051040 24051724 -131578396 + Lx5 LINE L1 2892 3583 -2297 6 768 5374 64 0 1 chr4 24051724 24052414 -131577706 + L1Md_F2 LINE L1 4898 5586 -297 7 768 8108 36 3 10 chr4 24052415 24053403 -131576717 + L1Md_F2 LINE L1 5588 6568 -14 7 768 207 88 0 0 chr4 24053408 24053442 -131576678 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 768 8554 203 99 20 chr4 24053447 24053703 -131576417 + Lx5 LINE L1 3566 3821 -2056 6 768 2088 120 15 0 chr4 24053703 24054027 -131576093 + ORR1A4 LTR MaLR 1 329 0 7 768 8554 203 99 20 chr4 24054027 24054044 -131576076 + Lx5 LINE L1 3822 3832 -2045 6 768 351 0 0 0 chr4 24054044 24054083 -131576037 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 768 8554 236 87 41 chr4 24054083 24057171 -131572949 + Lx5 LINE L1 3833 7429 -31 6 768 34 24 0 0 chr4 24057171 24057212 -131572908 + AT_rich Low_complexity Low_complexity 1 41 0 7 768 1558 66 0 82 chr4 24057262 24057494 -131572626 - L1_Mus2 LINE L1 -3 6563 6351 7 768 1752 269 38 22 chr4 24057517 24058210 -131571910 - Lx6 LINE L1 -4 7456 6455 7 768 476 263 183 33 chr4 24060068 24060308 -131569812 - B4A SINE B4 -16 276 1 8 768 421 289 22 128 chr4 24061301 24061527 -131568593 - ID_B1 SINE B4 -21 203 2 8 768 1023 292 134 44 chr4 24061717 24062286 -131567834 + Lx8 LINE L1 6786 7405 -68 8 768 1928 113 25 3 chr4 24062682 24062966 -131567154 - MTB_Mm LTR MaLR -117 290 1 8 768 448 330 81 41 chr4 24064912 24064942 -131565178 + B4A SINE B4 4 28 -264 8 768 3243 44 15 0 chr4 24064942 24065332 -131564788 - MTA_Mm LTR MaLR 0 396 1 8 768 448 330 81 41 chr4 24065332 24065522 -131564598 + B4A SINE B4 29 233 -59 8 768 1484 196 11 3 chr4 24065526 24065812 -131564308 + Lx4A LINE L1 6766 7053 -5 8 768 639 0 0 0 chr4 24065812 24065883 -131564237 + (GAAAA)n Simple_repeat Simple_repeat 2 72 0 8 768 10694 138 40 5 chr4 24065884 24068453 -131561667 + L1Md_F LINE L1 163 2825 -3058 8 768 33631 83 6 3 chr4 24068453 24074630 -131555490 + L1_Mus1 LINE L1 281 6567 -3 8 768 28 29 0 0 chr4 24074630 24074665 -131555455 + AT_rich Low_complexity Low_complexity 1 35 0 9 768 303 49 0 103 chr4 24075102 24075170 -131554950 - L1Md_F2 LINE L1 0 6582 6522 9 768 25 65 0 0 chr4 24075306 24075352 -131554768 + AT_rich Low_complexity Low_complexity 1 46 0 9 768 414 246 0 17 chr4 24076692 24076808 -131553312 - Lx5 LINE L1 0 7050 6937 9 768 1187 112 6 0 chr4 24076806 24076985 -131553135 + L1_Mur2 LINE L1 4439 4618 -1259 9 768 44 0 0 0 chr4 24077248 24077292 -131552828 + AT_rich Low_complexity Low_complexity 1 44 0 9 768 209 33 33 0 chr4 24078035 24078065 -131552055 + (TA)n Simple_repeat Simple_repeat 2 32 0 9 768 23 33 0 0 chr4 24079255 24079285 -131550835 + GC_rich Low_complexity Low_complexity 1 30 0 9 768 704 181 58 0 chr4 24079977 24080115 -131550005 + B1_Mur4 SINE Alu 1 146 -4 9 768 2273 90 15 9 chr4 24083142 24083467 -131546653 - ORR1A2 LTR MaLR 0 327 1 9 768 286 352 30 59 chr4 24083876 24084045 -131546075 - MER45A DNA Tip100 0 178 15 1 768 210 279 0 0 chr4 24084769 24084812 -131545308 - B1_Mur2 SINE Alu -41 108 66 1 768 753 194 34 34 chr4 24084832 24085008 -131545112 - Lx4A LINE L1 0 7058 6883 1 768 551 301 31 10 chr4 24085333 24085528 -131544592 + B3 SINE B2 1 199 -17 1 768 21 36 0 0 chr4 24085528 24085556 -131544564 + AT_rich Low_complexity Low_complexity 1 28 0 1 768 21 0 0 0 chr4 24086584 24086605 -131543515 + AT_rich Low_complexity Low_complexity 1 21 0 1 768 11961 147 34 6 chr4 24086635 24087559 -131542561 + L1Md_F LINE L1 402 1339 -4544 1 768 1236 27 0 0 chr4 24087559 24087706 -131542414 + B1_Mus1 SINE Alu 2 148 0 1 768 11961 109 11 25 chr4 24087706 24089479 -131540641 + L1Md_F LINE L1 1340 3102 -2781 1 768 4370 45 25 14 chr4 24089481 24090049 -131540071 + L1Md_F3 LINE L1 6011 6584 0 1 768 7394 120 91 0 chr4 24090054 24091682 -131538438 + L1_Mus1 LINE L1 4737 6564 -3 1 768 26 0 0 0 chr4 24091682 24091708 -131538412 + AT_rich Low_complexity Low_complexity 1 26 0 1 768 4559 40 0 0 chr4 24091884 24092428 -131537692 - L1Md_T LINE L1 0 6582 6039 1 768 343 252 36 96 chr4 24092789 24092944 -131537176 + L1MD2 LINE L1 5879 6023 -310 1 768 486 0 0 0 chr4 24093130 24093184 -131536936 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 768 754 311 44 44 chr4 24093291 24093587 -131536533 + MER89 LTR ERV1 217 512 -47 1 768 262 227 0 29 chr4 24093618 24093686 -131536434 + L1MD2 LINE L1 6275 6340 -19 1 768 232 276 102 11 chr4 24094047 24094135 -131535985 - Charlie9 DNA MER1_type -1096 1661 1566 1 768 23219 152 20 8 chr4 24094654 24099650 -131530470 - Lx LINE L1 0 6654 1601 1 768 587 278 68 62 chr4 24099647 24100131 -131529989 + L1M2 LINE L1 4283 4769 -1374 1 768 259 331 22 14 chr4 24101176 24101274 -131528846 + L1M3d LINE L1 926 1024 -5117 1 768 305 268 72 53 chr4 24101638 24101738 -131528382 + L1M3d LINE L1 2851 2957 -3247 1 768 680 285 28 33 chr4 24101738 24101952 -131528168 + B3 SINE B2 1 213 -3 1 768 305 268 72 53 chr4 24101952 24102060 -131528060 + L1M3d LINE L1 2958 3063 -3141 1 768 24 77 0 0 chr4 24102060 24102112 -131528008 + AT_rich Low_complexity Low_complexity 1 52 0 1 768 260 270 26 51 chr4 24102134 24102290 -131527830 - Lx9 LINE L1 -35 7609 7458 1 768 91 69 0 0 chr4 24102401 24102576 -131527544 + AT_rich Low_complexity Low_complexity 1 175 0 1 768 21 0 0 0 chr4 24102602 24102623 -131527497 + AT_rich Low_complexity Low_complexity 1 21 0 1 768 6705 165 46 15 chr4 24102623 24104193 -131525927 + Lx2B LINE L1 5375 6987 -13 1 768 556 196 21 50 chr4 24104198 24104319 -131525801 + Lx3C LINE L1 6839 6962 -14 1 768 252 0 0 0 chr4 24104319 24104347 -131525773 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 768 556 216 50 50 chr4 24104347 24104379 -131525741 + Lx3C LINE L1 6963 6997 -3 1 768 576 42 0 0 chr4 24104397 24104468 -131525652 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1 768 467 341 108 5 chr4 24104470 24104682 -131525438 + Tigger5 DNA MER2_type 3 236 -2170 1 768 225 228 34 34 chr4 24104724 24104783 -131525337 + Tigger5 DNA MER2_type 2347 2405 -1 1 768 467 316 92 27 chr4 24104800 24105138 -131524982 + L1MD3 LINE L1 7337 7696 -299 1 768 313 276 60 20 chr4 24105159 24105259 -131524861 + PB1D9 SINE Alu 1 104 -16 1 768 861 49 73 16 chr4 24105316 24105440 -131524680 + B1_Mus1 SINE Alu 16 146 -2 1 768 470 257 85 28 chr4 24106123 24106299 -131523821 - MER2 DNA MER2_type -150 195 10 1 768 599 281 89 30 chr4 24106342 24106544 -131523576 - Lx8 LINE L1 -339 7134 6921 1 768 13088 117 22 14 chr4 24106544 24108445 -131521675 - L1_Mus3 LINE L1 -5 6633 4733 1 768 198 0 0 0 chr4 24108445 24108467 -131521653 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 768 13088 134 9 10 chr4 24108467 24109424 -131520696 - L1_Mus3 LINE L1 -1151 4732 3768 1 768 24520 104 15 16 chr4 24109434 24111846 -131518274 - L1_Mus1 LINE L1 0 6567 4180 1 768 1103 95 0 7 chr4 24111846 24111994 -131518126 + B1_Mus1 SINE Alu 2 148 0 1 768 24520 134 16 35 chr4 24111994 24115718 -131514402 - L1_Mus1 LINE L1 -1704 4179 497 1 768 771 243 243 38 chr4 24115769 24116115 -131514005 - Lx8 LINE L1 -561 6912 6496 1 768 3359 136 18 15 chr4 24116207 24116754 -131513366 - Lx2 LINE L1 -1 6996 6448 1 768 1022 288 101 13 chr4 24116841 24117217 -131512903 + Lx8 LINE L1 7058 7466 -7 1 769 2080 176 34 72 chr4 24117505 24118146 -131511974 + Lx7 LINE L1 807 1432 -4448 1 769 662 291 59 0 chr4 24118168 24118413 -131511707 + Lx6 LINE L1 6805 7072 -388 1 769 1886 128 33 53 chr4 24118587 24118983 -131511137 + L1_Mur1 LINE L1 4498 4885 -1001 1 769 4465 158 34 7 chr4 24118964 24119920 -131510200 + Lx7 LINE L1 1536 2516 -3364 1 769 3129 138 50 32 chr4 24119923 24120477 -131509643 - RLTR12A LTR ERVK -4 564 1 1 769 29 28 0 0 chr4 24120532 24120568 -131509552 + AT_rich Low_complexity Low_complexity 1 36 0 1 769 857 184 104 5 chr4 24120647 24120849 -131509271 + Lx7 LINE L1 2529 2750 -3130 1 769 33749 38 1 0 chr4 24120850 24127133 -131502987 + L1Md_Gf LINE L1 1 5589 -297 1 769 8948 5 3 0 chr4 24127133 24128123 -131501997 + L1Md_T LINE L1 5587 6579 -3 1 769 33749 43 1 0 chr4 24128123 24128138 -131501982 + L1Md_Gf LINE L1 5590 5604 -282 1 769 198 0 0 0 chr4 24128146 24128168 -131501952 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 769 393 22 0 0 chr4 24128330 24128376 -131501744 + (A)n Simple_repeat Simple_repeat 1 46 0 1 769 1840 194 50 8 chr4 24128406 24128888 -131501232 + Lx7 LINE L1 2801 3302 -2578 1 769 5814 186 64 17 chr4 24128866 24129057 -131501063 + Lx7 LINE L1 4432 4624 -1256 1 769 210 37 0 0 chr4 24129057 24129084 -131501036 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 769 6373 198 63 37 chr4 24129084 24130705 -131499415 + Lx7 LINE L1 4625 6308 -1388 1 769 4337 65 4 0 chr4 24130705 24131257 -131498863 + L1_Mus2 LINE L1 6009 6562 -4 1 769 6373 230 58 92 chr4 24131257 24132711 -131497409 + Lx7 LINE L1 6309 7696 0 1 769 2129 166 14 3 chr4 24132864 24133221 -131496899 - Lx2A1 LINE L1 -6 7002 6642 1 769 234 0 0 0 chr4 24134188 24134214 -131495906 + (A)n Simple_repeat Simple_repeat 1 26 0 1 769 383 246 61 14 chr4 24134307 24134455 -131495665 + Lx4B LINE L1 6900 7054 -4 1 769 2737 102 57 2 chr4 24134463 24134866 -131495254 + L1_Mus3 LINE L1 6213 6637 -1 1 769 234 246 29 14 chr4 24134948 24135018 -131495102 + MLT1N2 LTR MaLR 481 551 -11 1 769 3111 56 2 0 chr4 24135018 24135428 -131494692 + L1Md_F2 LINE L1 5176 5586 -297 1 769 7830 53 16 5 chr4 24135429 24136413 -131493707 + L1Md_F2 LINE L1 5588 6582 0 1 769 192 336 68 31 chr4 24138693 24138818 -131491302 - MIR SINE MIR -108 160 33 1 769 657 38 0 0 chr4 24143623 24143703 -131486417 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1 769 459 0 0 0 chr4 24143832 24143883 -131486237 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 769 26 0 0 0 chr4 24145119 24145145 -131484975 + AT_rich Low_complexity Low_complexity 1 26 0 1 769 396 270 365 33 chr4 24147763 24148041 -131482079 + Lx8 LINE L1 7075 7444 -29 1 769 22 0 0 0 chr4 24148053 24148075 -131482045 + AT_rich Low_complexity Low_complexity 1 22 0 1 769 640 291 107 50 chr4 24148994 24149313 -131480807 - Arthur1C DNA Tip100 -25 338 2 1 769 655 313 105 27 chr4 24150031 24150595 -131479525 - L1MD3 LINE L1 -19 7976 7369 1 769 227 169 56 97 chr4 24151267 24151339 -131478781 + RLTR13A LTR ERVK 73 141 -714 1 769 447 19 0 0 chr4 24153253 24153305 -131476815 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 769 242 254 79 0 chr4 24153441 24153504 -131476616 + MIRc SINE MIR 83 150 -118 1 769 2594 53 0 0 chr4 24153508 24153831 -131476289 + IAPEY2_LTR LTR ERVK 32 354 -3 1 769 1836 131 17 7 chr4 24154420 24154713 -131475407 - Lx LINE L1 -6 6648 6353 1 769 428 350 116 68 chr4 24155334 24155644 -131474476 - MER68 LTR ERVL -38 525 201 1 769 21 36 0 0 chr4 24156194 24156222 -131473898 + AT_rich Low_complexity Low_complexity 1 28 0 1 769 185 0 0 39 chr4 24156320 24156346 -131473774 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 769 4063 154 19 14 chr4 24157130 24157994 -131472126 + L1Md_F2 LINE L1 273 1122 -5602 1 769 1942 116 4 0 chr4 24158033 24158308 -131471812 + ORR1A2 LTR MaLR 1 276 -51 1 769 30551 78 3 2 chr4 24158329 24162799 -131467321 + L1Md_F2 LINE L1 1108 5586 -297 1 769 7008 72 30 18 chr4 24162800 24163770 -131466350 + L1Md_F2 LINE L1 5588 6569 -13 1 769 456 19 0 0 chr4 24163779 24163832 -131466288 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1 769 275 250 24 48 chr4 24166536 24166620 -131463500 + MIRm SINE MIR 184 265 -11 1 769 26 30 0 0 chr4 24167466 24167499 -131462621 + AT_rich Low_complexity Low_complexity 1 33 0 1 769 288 200 167 28 chr4 24169366 24169438 -131460682 - ID4_ SINE ID 0 83 2 1 769 216 0 0 0 chr4 24171110 24171134 -131458986 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 769 387 0 0 0 chr4 24171477 24171520 -131458600 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 769 23 33 0 0 chr4 24171853 24171883 -131458237 + AT_rich Low_complexity Low_complexity 1 30 0 1 769 21 0 0 0 chr4 24172076 24172097 -131458023 + AT_rich Low_complexity Low_complexity 1 21 0 1 769 378 0 0 0 chr4 24172830 24172872 -131457248 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 769 418 247 0 58 chr4 24172885 24172988 -131457132 - PB1D10 SINE Alu -18 99 3 1 769 557 333 118 19 chr4 24173969 24174180 -131455940 - B4A SINE B4 -59 233 2 1 769 1397 182 67 36 chr4 24174438 24174587 -131455533 - Lx7 LINE L1 0 7696 7535 1 769 351 60 0 0 chr4 24174587 24174637 -131455483 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 1 769 1397 182 67 36 chr4 24174637 24174817 -131455303 - Lx7 LINE L1 -162 7534 7358 1 769 43 35 0 0 chr4 24174823 24174880 -131455240 + AT_rich Low_complexity Low_complexity 1 57 0 1 769 186 43 0 0 chr4 24175569 24175592 -131454528 + (T)n Simple_repeat Simple_repeat 1 23 0 1 769 375 363 146 21 chr4 24175601 24175840 -131454280 - LFSINE_Vert SINE SINE 0 459 191 1 769 192 77 0 0 chr4 24176339 24176365 -131453755 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 769 555 90 0 0 chr4 24176985 24177063 -131453057 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 769 412 258 98 34 chr4 24177490 24177755 -131452365 - L1MC4a LINE L1 -6 7876 7595 1 769 247 273 18 18 chr4 24178074 24178130 -131451990 - ID4 SINE ID -25 58 3 1 769 200 31 62 0 chr4 24178779 24178811 -131451309 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1 769 24 32 0 0 chr4 24178867 24178898 -131451222 + AT_rich Low_complexity Low_complexity 1 31 0 1 769 2053 112 22 6 chr4 24180389 24180702 -131449418 + ORR1A3 LTR MaLR 1 318 -8 1 769 24 32 0 0 chr4 24180884 24180915 -131449205 + AT_rich Low_complexity Low_complexity 1 31 0 1 769 194 228 35 17 chr4 24181318 24181376 -131448744 + L3 LINE CR1 943 1001 -3488 1 769 5281 136 26 2 chr4 24181654 24182508 -131447612 - Lx2 LINE L1 -5 6992 6119 2 769 23 0 0 0 chr4 24182533 24182556 -131447564 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 377 368 89 69 chr4 24182703 24183050 -131447070 + ORR1E LTR MaLR 1 354 -5 2 769 24 0 0 0 chr4 24183256 24183280 -131446840 + AT_rich Low_complexity Low_complexity 1 24 0 2 769 645 271 138 18 chr4 24183418 24183869 -131446251 + L1MD LINE L1 3249 3753 -2393 2 769 7661 89 6 3 chr4 24183870 24185697 -131444423 + L1VL4 LINE L1 84 1919 -1640 2 769 234 0 0 0 chr4 24185876 24185902 -131444218 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 769 408 158 0 0 chr4 24185982 24186058 -131444062 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 769 329 24 0 24 chr4 24186064 24186106 -131444014 + HAL1-3A_ME LINE L1 1976 2016 -842 2 769 9154 197 67 34 chr4 24186375 24189410 -131440710 + Lx6 LINE L1 134 3280 -2600 2 769 4229 216 83 12 chr4 24189418 24190612 -131439508 + Lx6 LINE L1 5388 6651 -809 2 769 273 340 49 14 chr4 24191011 24191154 -131438966 - MIRc SINE MIR -27 241 94 2 769 344 285 80 49 chr4 24191401 24191588 -131438532 + MIRb SINE MIR 8 203 -59 2 769 952 246 151 0 chr4 24191694 24191926 -131438194 + ERVL-B4-int LTR ERVL 3522 3788 -1926 2 769 715 290 118 4 chr4 24193211 24193547 -131436573 - MTD LTR MaLR -2 417 3 2 769 2779 270 112 53 chr4 24193553 24194721 -131435399 - MTD-int LTR MaLR -4 1254 18 2 769 1002 281 122 12 chr4 24194735 24195063 -131435057 - MTD LTR MaLR 0 419 56 2 769 272 265 12 12 chr4 24195107 24195191 -131434929 + MER57D LTR ERV1 75 158 -253 2 769 1360 257 14 20 chr4 24195191 24195536 -131434584 + Lx6 LINE L1 7109 7451 -9 2 769 239 271 38 0 chr4 24195543 24195676 -131434444 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 769 367 329 180 21 chr4 24195740 24195979 -131434141 + B4A SINE B4 3 279 -13 2 769 272 210 27 40 chr4 24195988 24196137 -131433983 + (CATA)n Simple_repeat Simple_repeat 4 150 0 2 769 339 333 0 0 chr4 24196161 24196266 -131433854 + PB1D10 SINE Alu 1 105 -12 2 769 494 267 16 32 chr4 24196378 24196502 -131433618 + RSINE1 SINE B4 44 165 0 2 769 32878 75 8 16 chr4 24196835 24202066 -131428054 + L1Md_F LINE L1 396 5586 -297 2 769 8131 43 1 7 chr4 24202066 24203068 -131427052 + L1Md_F2 LINE L1 5587 6582 0 2 769 32878 66 10 1 chr4 24203068 24203089 -131427031 + L1Md_F LINE L1 5587 5607 -276 2 769 335 227 189 70 chr4 24203611 24203796 -131426324 + MT2B2 LTR ERVL 51 257 -327 2 769 620 187 121 8 chr4 24203702 24203826 -131426294 + B1_Mur2 SINE Alu 6 143 -6 2 769 216 200 0 0 chr4 24203837 24203882 -131426238 + GA-rich Low_complexity Low_complexity 2 46 0 2 769 180 111 0 0 chr4 24203949 24203976 -131426144 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 769 281 299 10 10 chr4 24204676 24204774 -131425346 + L1MC4 LINE L1 7751 7848 -194 2 769 189 141 0 60 chr4 24205036 24205119 -131425001 + T-rich Low_complexity Low_complexity 3 80 0 2 769 213 229 56 28 chr4 24207096 24207168 -131422952 + L3 LINE CR1 2725 2798 -1691 2 769 516 312 19 13 chr4 24207438 24207594 -131422526 + RSINE1 SINE B4 4 160 -5 2 769 430 331 21 21 chr4 24207705 24207847 -131422273 + B1F2 SINE Alu 2 143 -6 2 769 330 45 0 0 chr4 24208147 24208191 -131421929 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 769 21 36 0 0 chr4 24208558 24208586 -131421534 + AT_rich Low_complexity Low_complexity 1 28 0 2 769 1155 148 16 5 chr4 24208850 24209034 -131421086 + B2_Mm2 SINE B2 9 194 -1 2 769 8715 108 16 10 chr4 24209357 24211382 -131418738 + L1Md_F LINE L1 435 2471 -3412 2 769 34762 80 11 7 chr4 24211380 24216528 -131413592 + L1Md_F LINE L1 108 5234 -649 2 769 387 0 0 0 chr4 24216528 24216571 -131413549 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 769 34762 63 2 3 chr4 24216571 24217132 -131412988 + L1Md_F LINE L1 5235 5796 -87 2 769 34929 57 1 27 chr4 24217136 24222486 -131407634 + L1Md_A LINE L1 253 5462 -421 2 769 33814 35 0 0 chr4 24222484 24227700 -131402420 + L1Md_T LINE L1 277 5589 -297 2 769 8936 8 1 0 chr4 24227700 24228695 -131401425 + L1Md_T LINE L1 5590 6585 0 2 769 1144 15 0 0 chr4 24228695 24228831 -131401289 + L1Md_A LINE L1 5451 5586 -297 2 769 9022 6 0 0 chr4 24228831 24229827 -131400293 + L1Md_A LINE L1 5587 6582 0 2 769 2873 14 0 0 chr4 24229829 24230173 -131399947 + L1Md_T LINE L1 5243 5586 -297 2 769 7930 59 0 0 chr4 24230173 24231168 -131398952 + L1Md_T LINE L1 5587 6581 -1 2 769 26295 25 0 0 chr4 24231170 24234426 -131395694 + L1Md_T LINE L1 2327 5582 -301 2 769 8011 56 0 0 chr4 24234430 24235425 -131394695 + L1Md_T LINE L1 5587 6581 -1 2 769 5455 89 0 6 chr4 24235425 24236202 -131393918 + L1Md_F2 LINE L1 5788 6559 -23 2 769 363 23 0 0 chr4 24236202 24236246 -131393874 + (TTAAA)n Simple_repeat Simple_repeat 2 45 0 2 769 434 150 10 29 chr4 24236473 24236576 -131393544 + Lx9 LINE L1 7539 7639 -5 2 769 21 0 0 0 chr4 24237347 24237368 -131392752 + AT_rich Low_complexity Low_complexity 1 21 0 2 769 207 100 0 0 chr4 24238694 24238724 -131391396 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 769 322 192 7 132 chr4 24238739 24238883 -131391237 + Lx9 LINE L1 7518 7643 -1 2 769 393 269 160 8 chr4 24238911 24239039 -131391081 - B3A SINE B2 -35 163 2 2 769 632 305 118 110 chr4 24239063 24239428 -131390692 - MTE2a LTR MaLR -2 377 10 2 769 1250 255 15 30 chr4 24239751 24240086 -131390034 - Lx8 LINE L1 -804 6669 6340 2 769 547 250 28 23 chr4 24240109 24240285 -131389835 - Lx8 LINE L1 -1201 6272 6096 2 769 1098 227 74 108 chr4 24240336 24240751 -131389369 + MT2A LTR ERVL 1 540 -61 2 769 630 75 0 0 chr4 24240754 24240847 -131389273 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 2 769 187 27 77 51 chr4 24240868 24240907 -131389213 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 2 769 216 0 0 0 chr4 24243168 24243192 -131386928 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2 769 341 259 26 9 chr4 24243292 24243405 -131386715 + L1Md_F LINE L1 592 706 -5813 2 769 8151 121 19 15 chr4 24243519 24245293 -131384827 + L1VL4 LINE L1 460 2242 -1317 2 769 3969 34 0 15 chr4 24245293 24245769 -131384351 + L1Md_F2 LINE L1 6114 6582 0 2 769 8151 108 18 16 chr4 24245769 24245793 -131384327 + L1VL4 LINE L1 2243 2266 -1293 2 769 12560 127 226 3 chr4 24245805 24246537 -131383583 - L1_Mm LINE L1 -96 5787 4735 2 769 221 0 0 33 chr4 24246537 24246567 -131383553 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 96 12560 127 226 3 chr4 24246567 24248418 -131381702 - L1_Mm LINE L1 -1149 4734 2629 2 770 562 65 0 0 chr4 24248411 24248488 -131381632 + L1_Mus3 LINE L1 5798 5874 -764 2 770 491 75 0 0 chr4 24248480 24248547 -131381573 + L1_Mus3 LINE L1 6106 6172 -394 2 770 755 91 0 0 chr4 24248546 24248656 -131381464 + L1_Mus3 LINE L1 6316 6425 -213 2 770 395 309 25 50 chr4 24248855 24249015 -131381105 + RSINE1 SINE B4 4 159 -6 2 770 3300 165 114 17 chr4 24249048 24249481 -131380639 + Lx4B LINE L1 6265 6748 -310 2 770 369 0 0 0 chr4 24249481 24249522 -131380598 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 770 3300 165 114 17 chr4 24249522 24249808 -131380312 + Lx4B LINE L1 6749 7053 -5 2 770 411 167 0 0 chr4 24249887 24249965 -131380155 + Lx3C LINE L1 674 751 -6233 2 770 3005 163 43 9 chr4 24250098 24251169 -131378951 + L1_Mur1 LINE L1 570 1686 -4200 2 770 180 0 0 0 chr4 24251169 24251189 -131378931 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 770 2822 136 19 19 chr4 24251189 24251247 -131378873 + L1_Mur1 LINE L1 1687 1750 -4136 2 770 3089 52 20 152 chr4 24251247 24251794 -131378326 - IAPLTR2_Mm LTR ERVK 0 475 1 2 770 2822 136 19 19 chr4 24251794 24251815 -131378305 + L1_Mur1 LINE L1 1751 1764 -4122 2 770 27 29 0 0 chr4 24251829 24251863 -131378257 + AT_rich Low_complexity Low_complexity 1 34 0 2 770 14178 138 21 35 chr4 24251871 24252426 -131377694 + Lx3C LINE L1 2890 3450 -3526 2 770 1867 136 24 75 chr4 24252426 24252760 -131377360 + ORR1A2 LTR MaLR 3 319 -8 2 770 14178 138 21 35 chr4 24252760 24255606 -131374514 + Lx3C LINE L1 3451 6333 -643 2 770 2614 82 89 13 chr4 24255606 24255978 -131374142 - MTB LTR MaLR 0 400 1 2 770 7701 135 31 31 chr4 24255978 24256603 -131373517 + Lx3C LINE L1 6334 6964 -12 2 770 222 37 0 0 chr4 24256603 24256630 -131373490 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 770 3075 102 4 11 chr4 24256991 24257446 -131372674 - Lx LINE L1 -200 6454 6003 2 770 1206 144 15 0 chr4 24257448 24257643 -131372477 + Lx LINE L1 6457 6654 0 2 770 1189 229 38 24 chr4 24258064 24258404 -131371716 + Lx2B LINE L1 6645 6989 -11 2 770 3022 65 10 0 chr4 24258898 24259284 -131370836 + RLTR10 LTR ERVK 1 390 0 2 770 1176 299 63 15 chr4 24260361 24260759 -131369361 + Lx5 LINE L1 6614 7030 -20 2 770 306 0 0 0 chr4 24261154 24261188 -131368932 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 770 1658 240 30 8 chr4 24261398 24261899 -131368221 + L1Md_F2 LINE L1 446 940 -5784 2 770 7861 76 36 29 chr4 24261900 24263266 -131366854 + L1Md_F2 LINE L1 1130 2505 -3378 2 770 586 26 13 0 chr4 24263268 24263346 -131366774 - L1Md_F2 LINE L1 -1286 4597 4519 2 770 7617 64 4 0 chr4 24263346 24264376 -131365744 + L1Md_F2 LINE L1 4553 5586 -297 2 770 7742 63 2 1 chr4 24264377 24265371 -131364749 + L1Md_F2 LINE L1 5588 6582 0 2 770 405 301 29 35 chr4 24265498 24265903 -131364217 + L1MEg LINE L1 1434 1988 -3898 2 770 227 281 0 0 chr4 24266089 24266153 -131363967 + L1_Rod LINE L1 2122 2185 -3662 2 770 1263 132 50 0 chr4 24266151 24266371 -131363749 - L1_Mur3 LINE L1 -835 5045 4815 2 770 2419 141 81 15 chr4 24266370 24266838 -131363282 + L1_Mur3 LINE L1 5046 5544 -336 2 770 451 141 0 11 chr4 24266862 24266955 -131363165 + Lx2 LINE L1 6905 6996 -1 2 770 728 307 43 47 chr4 24266993 24267571 -131362549 + L1MEg LINE L1 3147 3722 -2158 2 770 215 309 195 87 chr4 24269724 24269873 -131360247 + B4 SINE B4 5 169 -123 2 770 216 244 0 182 chr4 24269791 24269901 -131360219 + B1F2 SINE Alu 16 105 -44 2 770 218 320 0 20 chr4 24269963 24270062 -131360058 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 770 3094 136 50 16 chr4 24270193 24270770 -131359350 + L1VL4 LINE L1 193 789 -5513 2 770 5583 92 25 7 chr4 24270763 24271703 -131358417 + MusHAL1 LINE L1 1 956 -1756 2 770 1380 142 4 0 chr4 24271704 24271929 -131358191 + L1Md_F LINE L1 214 439 -6080 2 770 2889 46 0 0 chr4 24271927 24272295 -131357825 + L1Md_F2 LINE L1 5219 5586 -297 2 770 7796 62 0 5 chr4 24272296 24273284 -131356836 + L1Md_F2 LINE L1 5588 6570 -12 2 770 397 41 0 0 chr4 24273627 24273676 -131356444 + L1Md_F2 LINE L1 6166 6214 -368 2 770 2253 227 37 25 chr4 24273707 24274277 -131355843 + Lx7 LINE L1 6829 7405 -291 2 770 288 0 0 0 chr4 24274280 24274312 -131355808 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 770 262 250 102 24 chr4 24274363 24274490 -131355630 + Lx7 LINE L1 7560 7696 0 2 770 1557 244 62 23 chr4 24274664 24275135 -131354985 - Lx7 LINE L1 -1574 6122 5634 2 770 467 167 11 0 chr4 24275130 24275220 -131354900 + Lx7 LINE L1 6101 6191 -1505 2 770 852 232 102 4 chr4 24275223 24275448 -131354672 + Lx6 LINE L1 6218 6464 -996 2 770 429 171 34 0 chr4 24275447 24275535 -131354585 + Lx7 LINE L1 6906 6996 -700 2 770 1207 282 51 24 chr4 24275545 24275999 -131354121 + Lx7 LINE L1 6815 7280 -416 2 770 24 0 0 0 chr4 24276148 24276172 -131353948 + AT_rich Low_complexity Low_complexity 1 24 0 2 770 38 22 0 0 chr4 24276207 24276252 -131353868 + AT_rich Low_complexity Low_complexity 1 45 0 2 770 720 0 0 0 chr4 24276270 24276350 -131353770 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 2 770 272 295 52 44 chr4 24276595 24276730 -131353390 - MIR SINE MIR -47 215 80 2 770 21 0 0 0 chr4 24276883 24276904 -131353216 + AT_rich Low_complexity Low_complexity 1 21 0 2 770 195 143 31 31 chr4 24278913 24278978 -131351142 + (TATG)n Simple_repeat Simple_repeat 4 68 0 2 770 345 227 121 104 chr4 24279463 24279498 -131350622 - B2_Mm1t SINE B2 -4 189 5 3 770 533 326 61 0 chr4 24279498 24279645 -131350475 - RSINE1 SINE B4 -4 161 6 3 770 425 290 120 27 chr4 24280612 24280945 -131349175 + L1MA4A LINE L1 5598 5961 -342 3 770 28553 110 11 19 chr4 24281260 24286558 -131343562 + L1Md_F2 LINE L1 277 5585 -298 3 770 7984 49 5 2 chr4 24286559 24287552 -131342568 + L1Md_F2 LINE L1 5587 6582 0 3 770 7101 80 3 6 chr4 24287552 24289018 -131341102 + L1_Mus1 LINE L1 5103 6565 -2 3 770 1734 130 33 0 chr4 24289197 24289467 -131340653 + Lx3A LINE L1 6697 6975 -6 3 770 1064 256 143 37 chr4 24289736 24290113 -131340007 - MTD LTR MaLR 0 419 3 3 770 1949 91 0 89 chr4 24291247 24291572 -131338548 + L1_Mus2 LINE L1 6270 6565 -1 3 770 1855 105 11 131 chr4 24291720 24292094 -131338026 + ORR1A4 LTR MaLR 1 329 0 3 770 553 308 101 64 chr4 24292096 24292363 -131337757 + B4A SINE B4 2 278 -14 3 770 604 55 0 0 chr4 24292626 24292717 -131337403 - L1Md_F2 LINE L1 -2 6580 6490 3 770 2062 130 0 3 chr4 24292941 24293264 -131336856 + Lx2 LINE L1 6675 6996 -1 3 770 21 0 0 0 chr4 24293606 24293627 -131336493 + AT_rich Low_complexity Low_complexity 1 21 0 3 770 296 374 49 49 chr4 24295308 24295471 -131334649 + MER5A DNA MER1_type 20 182 -7 3 770 5157 69 0 34 chr4 24295570 24296274 -131333846 + L1Md_F2 LINE L1 5890 6569 -13 3 770 710 253 54 11 chr4 24296395 24296579 -131333541 - B3A SINE B2 -6 192 1 3 770 981 160 2 5 chr4 24296654 24297100 -131333020 + (TG)n Simple_repeat Simple_repeat 1 445 0 3 770 252 0 0 0 chr4 24297129 24297157 -131332963 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 770 362 295 26 26 chr4 24298098 24298213 -131331907 + B4A SINE B4 4 118 -174 3 770 185 0 40 0 chr4 24298222 24298247 -131331873 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 770 1122 51 0 0 chr4 24298247 24298384 -131331736 - B1_Mm SINE Alu -9 138 2 3 770 298 142 46 28 chr4 24298596 24298705 -131331415 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 3 770 751 341 35 54 chr4 24298989 24299528 -131330592 + Lx9 LINE L1 6898 7426 -218 3 770 402 39 0 0 chr4 24299557 24299609 -131330511 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 770 264 30 0 0 chr4 24299609 24299642 -131330478 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 770 524 139 0 15 chr4 24300494 24300625 -131329495 + (CAGAGA)n Simple_repeat Simple_repeat 4 132 0 3 770 205 296 49 39 chr4 24300717 24300819 -131329301 + MER5B DNA MER1_type 7 109 -69 3 770 24 0 0 0 chr4 24303174 24303198 -131326922 + AT_rich Low_complexity Low_complexity 1 24 0 3 770 886 256 85 8 chr4 24304005 24304265 -131325855 + B4A SINE B4 1 280 -12 3 770 500 209 0 0 chr4 24304279 24304370 -131325750 + B1_Mm SINE Alu 57 147 0 3 770 276 359 109 19 chr4 24304547 24304757 -131325363 - MIR SINE MIR -16 246 18 3 770 645 373 51 11 chr4 24306188 24306462 -131323658 + B4A SINE B4 2 286 -6 3 770 303 85 0 0 chr4 24307025 24307072 -131323048 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 770 2423 92 19 8 chr4 24307436 24307799 -131322321 + Lx3_Mus LINE L1 6642 7008 -1 3 770 24 32 0 0 chr4 24307799 24307830 -131322290 + AT_rich Low_complexity Low_complexity 1 31 0 3 770 218 194 14 29 chr4 24308335 24308404 -131321716 + (TAA)n Simple_repeat Simple_repeat 2 69 0 3 770 227 306 180 42 chr4 24308738 24308905 -131321215 + Lx8 LINE L1 6932 7121 -352 3 770 540 279 131 15 chr4 24309495 24309954 -131320166 - L1MA4 LINE L1 -362 5938 5367 3 770 283 347 41 9 chr4 24310032 24310250 -131319870 - Lx8 LINE L1 -52 7421 7197 3 770 227 252 32 73 chr4 24310570 24310694 -131319426 - L1M5 LINE L1 -1478 4668 4550 3 770 753 333 14 14 chr4 24310913 24311202 -131318918 + B4A SINE B4 2 290 -2 3 770 646 142 117 8 chr4 24311309 24311437 -131318683 + B1_Mus1 SINE Alu 2 143 -5 3 770 946 269 46 35 chr4 24311526 24311824 -131318296 - ORR1D2 LTR MaLR 0 378 73 3 770 2908 64 7 6 chr4 24311826 24312460 -131317660 - L1Md_F2 LINE L1 -626 5956 5206 3 770 1645 63 0 26 chr4 24312466 24312693 -131317427 + L1Md_F2 LINE L1 6350 6570 -12 3 770 492 267 0 0 chr4 24312696 24312812 -131317308 - ORR1D2 LTR MaLR -233 141 26 3 770 3986 64 2 2 chr4 24312822 24313326 -131316794 - L1_Mus1 LINE L1 0 6567 6064 3 770 2500 59 19 17 chr4 24313326 24313509 -131316611 + L1_Mus1 LINE L1 5661 5848 -719 3 770 3424 25 2 2 chr4 24313509 24313905 -131316215 + MTA_Mm LTR MaLR 1 396 0 3 770 2500 59 19 17 chr4 24313905 24314083 -131316037 + L1_Mus1 LINE L1 5849 6023 -544 3 770 2740 177 28 34 chr4 24314161 24314669 -131315451 + RMER19C LTR ERVK 107 611 0 3 770 1265 182 0 13 chr4 24314726 24314954 -131315166 + URR1B DNA MER1_type 1 225 0 3 770 620 250 61 0 chr4 24315031 24315163 -131314957 + B1F2 SINE Alu 1 140 -9 3 770 245 423 15 8 chr4 24315370 24315501 -131314619 - MER58A DNA MER1_type -92 132 1 3 770 22 0 0 0 chr4 24315638 24315660 -131314460 + AT_rich Low_complexity Low_complexity 1 22 0 3 770 577 283 24 18 chr4 24316318 24316487 -131313633 + Lx8 LINE L1 6587 6756 -717 3 770 452 204 0 0 chr4 24316484 24316577 -131313543 - Lx8 LINE L1 -343 7130 7038 3 770 1690 267 128 15 chr4 24316634 24317050 -131313070 + Lx8 LINE L1 6781 7226 -247 3 770 333 0 0 0 chr4 24317050 24317087 -131313033 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 770 1690 267 128 15 chr4 24317087 24317278 -131312842 + Lx8 LINE L1 7227 7456 -17 3 770 252 0 0 0 chr4 24317398 24317426 -131312694 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 770 1235 108 6 6 chr4 24317426 24317603 -131312517 - B2_Mm1t SINE B2 -15 178 2 3 770 6422 141 20 8 chr4 24317615 24319419 -131310701 - Lx2 LINE L1 -532 6465 4636 3 770 3342 144 30 2 chr4 24319421 24319964 -131310156 + Lx2 LINE L1 6440 6997 0 3 770 194 306 32 16 chr4 24320286 24320349 -131309771 - L2b LINE L2 -94 3281 3218 3 770 484 342 69 50 chr4 24321496 24321872 -131308248 + L1M5 LINE L1 4858 5240 -906 3 770 382 255 97 13 chr4 24321927 24322082 -131308038 + L1MC LINE L1 5316 5483 -2399 3 770 567 279 85 0 chr4 24322952 24323117 -131307003 + Lx8 LINE L1 6209 6387 -1086 3 770 1851 269 79 61 chr4 24323120 24323506 -131306614 + Lx8 LINE L1 6565 6991 -482 3 770 777 284 5 5 chr4 24323506 24323715 -131306405 + B3 SINE B2 1 209 -7 3 770 1851 269 79 61 chr4 24323715 24324127 -131305993 + Lx8 LINE L1 6992 7377 -96 3 770 6018 187 13 54 chr4 24324502 24324968 -131305152 + L1_Mur2 LINE L1 1136 1596 -4281 3 770 265 24 48 0 chr4 24324968 24325010 -131305110 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 770 6018 195 25 38 chr4 24325010 24326174 -131303946 + L1_Mur2 LINE L1 1597 2730 -3147 3 770 583 152 35 171 chr4 24326177 24326226 -131303894 + L1_Mur2 LINE L1 5214 5262 -618 3 770 1629 37 0 0 chr4 24326226 24326414 -131303706 + B2_Mm1a SINE B2 3 190 -3 3 770 629 152 35 171 chr4 24326414 24326650 -131303470 + L1_Mur2 LINE L1 5263 5460 -420 3 770 4112 190 89 26 chr4 24326650 24327560 -131302560 - RMER19B LTR ERVK 0 902 1 3 770 1436 308 11 18 chr4 24327575 24328015 -131302105 + Lx5 LINE L1 6567 7003 -47 3 770 319 226 71 51 chr4 24328273 24328324 -131301796 + MLT1A1 LTR MaLR 19 71 -337 3 770 1216 75 10 50 chr4 24328324 24328490 -131301630 + B2_Mm2 SINE B2 4 165 -30 3 770 2456 127 152 0 chr4 24328490 24328877 -131301243 + RLTR41 LTR ERV1 1 446 0 3 770 1216 75 10 50 chr4 24328877 24328908 -131301212 + B2_Mm2 SINE B2 166 193 -2 3 770 1414 259 22 43 chr4 24329002 24329157 -131300963 + ORR1D1 LTR MaLR 12 164 -210 3 770 207 0 0 0 chr4 24329157 24329180 -131300940 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 770 342 0 0 0 chr4 24329180 24329217 -131300903 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 770 1414 259 22 43 chr4 24329217 24329431 -131300689 + ORR1D1 LTR MaLR 165 373 -1 3 770 365 269 17 44 chr4 24329450 24329606 -131300514 + MLT1A1 LTR MaLR 220 408 0 3 770 899 170 0 0 chr4 24329846 24329993 -131300127 + B1_Mur2 SINE Alu 2 148 -1 3 770 196 53 26 26 chr4 24330005 24330044 -131300076 + (CAAAAA)n Simple_repeat Simple_repeat 5 43 0 3 770 37 23 0 0 chr4 24330547 24330591 -131299529 + AT_rich Low_complexity Low_complexity 1 44 0 3 770 293 262 23 70 chr4 24330591 24330677 -131299443 - RSINE1 SINE B4 -19 146 65 3 770 589 254 184 15 chr4 24330772 24330958 -131299162 + MTE2a LTR MaLR 173 378 -1 3 770 379 263 101 0 chr4 24330958 24331051 -131299069 + MTE2a-int LTR MaLR 13 115 -1465 3 770 553 302 35 0 chr4 24331065 24331234 -131298886 + MTE2a-int LTR MaLR 227 401 -1179 3 770 322 311 139 40 chr4 24331246 24331447 -131298673 + MTE2a-int LTR MaLR 547 767 -813 3 770 235 92 38 50 chr4 24331538 24331618 -131298502 + T-rich Low_complexity Low_complexity 3 81 0 3 770 1302 245 99 59 chr4 24331626 24331689 -131298431 + MTD LTR MaLR 18 81 -338 3 770 1017 96 0 0 chr4 24331689 24331824 -131298296 + B1_Mus1 SINE Alu 1 135 -13 3 770 533 15 0 15 chr4 24331824 24331891 -131298229 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 3 770 752 83 9 0 chr4 24331894 24332003 -131298117 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 3 770 1302 245 99 59 chr4 24332003 24332307 -131297813 + MTD LTR MaLR 82 404 -15 3 770 1822 268 104 66 chr4 24332332 24333162 -131296958 + MTD-int LTR MaLR 18 1005 -253 3 770 557 214 8 8 chr4 24333169 24333287 -131296833 + MTD LTR MaLR 243 360 -59 3 770 2389 285 88 43 chr4 24333364 24334391 -131295729 - Lx8 LINE L1 -2 7471 6393 3 770 1225 222 38 148 chr4 24334391 24334818 -131295302 + ORR1C2 LTR MaLR 3 382 -2 3 770 2389 285 88 43 chr4 24334818 24334901 -131295219 - Lx8 LINE L1 -1081 6392 6312 3 770 1798 280 124 3 chr4 24334909 24335478 -131294642 + MTE2a-int LTR MaLR 856 1537 -43 3 770 1066 284 30 111 chr4 24335478 24335874 -131294246 + MTE2a LTR MaLR 1 364 -15 3 770 234 91 0 0 chr4 24335932 24335965 -131294155 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 770 236 296 41 0 chr4 24336052 24336150 -131293970 - L1MA6 LINE L1 -7 6293 6192 3 770 252 211 0 0 chr4 24336280 24336351 -131293769 + T-rich Low_complexity Low_complexity 1 71 0 3 770 1178 62 7 0 chr4 24336352 24336498 -131293622 - B1_Mus1 SINE Alu -1 147 1 3 770 762 11 0 0 chr4 24336511 24336598 -131293522 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 3 770 2037 106 52 19 chr4 24336783 24337092 -131293028 - ORR1A2 LTR MaLR -8 319 1 3 770 789 0 30 0 chr4 24337341 24337442 -131292678 + (TTTTG)n Simple_repeat Simple_repeat 2 105 0 3 770 1006 90 30 0 chr4 24337442 24337575 -131292545 - B1_Mus1 SINE Alu -10 138 2 3 770 1238 287 68 55 chr4 24337833 24338731 -131291389 - L1MA6 LINE L1 -358 5942 5037 3 770 1090 74 0 26 chr4 24338731 24338883 -131291237 - B1_Mus1 SINE Alu 0 148 1 3 770 1238 261 44 70 chr4 24338883 24339240 -131290880 - L1MA6 LINE L1 -1107 5036 4685 3 770 666 276 151 41 chr4 24339220 24339831 -131290289 - L1MA6 LINE L1 -1733 4410 3733 3 770 28 48 0 0 chr4 24339899 24339941 -131290179 + AT_rich Low_complexity Low_complexity 1 42 0 3 770 478 328 30 7 chr4 24339941 24340076 -131290044 - RSINE1 SINE B4 0 165 28 3 770 266 287 10 10 chr4 24340120 24340222 -131289898 - L1MA6 LINE L1 -2461 3682 3581 3 770 542 287 43 159 chr4 24340225 24340552 -131289568 + B4A SINE B4 4 292 0 3 770 297 0 0 0 chr4 24340574 24340607 -131289513 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 770 378 0 0 0 chr4 24340607 24340648 -131289472 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 770 560 289 29 5 chr4 24340662 24340867 -131289253 - L1MA6 LINE L1 -2585 3558 3349 3 770 421 150 269 42 chr4 24340988 24341139 -131288981 - B2_Mm2 SINE B2 -6 189 2 4 770 1143 126 11 17 chr4 24341139 24341317 -131288803 - B2_Mm1t SINE B2 -15 178 2 4 770 468 0 0 0 chr4 24341704 24341756 -131288364 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 770 694 238 122 0 chr4 24342043 24342224 -131287896 + B3 SINE B2 3 205 -11 4 770 23 0 0 0 chr4 24342228 24342251 -131287869 + AT_rich Low_complexity Low_complexity 1 23 0 4 770 383 53 0 34 chr4 24342719 24342778 -131287342 + (TATG)n Simple_repeat Simple_repeat 3 59 0 4 770 228 348 53 18 chr4 24342902 24343016 -131287104 + LTR78 LTR ERV1 758 875 -429 4 770 257 329 99 20 chr4 24343095 24343247 -131286873 - MER5A DNA MER1_type 0 189 26 4 770 1125 62 0 0 chr4 24343252 24343398 -131286722 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 4 770 326 278 110 22 chr4 24343875 24344011 -131286109 + MIRb SINE MIR 98 245 -23 4 770 237 33 0 0 chr4 24344016 24344046 -131286074 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 4 770 1085 99 0 0 chr4 24344049 24344191 -131285929 - B1_Mus1 SINE Alu -6 142 1 4 770 1137 55 7 14 chr4 24344509 24344657 -131285463 + B1_Mus2 SINE Alu 1 147 0 4 770 272 94 19 0 chr4 24344657 24344710 -131285410 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 4 770 903 107 0 0 chr4 24344774 24344905 -131285215 - L1_Mus2 LINE L1 0 6566 6436 4 770 2511 71 3 0 chr4 24344906 24345244 -131284876 + L1_Mus2 LINE L1 6091 6429 -138 4 770 27 0 0 0 chr4 24345285 24345312 -131284808 + AT_rich Low_complexity Low_complexity 1 27 0 4 770 22 56 0 0 chr4 24346183 24346219 -131283901 + AT_rich Low_complexity Low_complexity 1 36 0 4 770 728 274 58 62 chr4 24346246 24346683 -131283437 + L1MA5 LINE L1 5351 5785 -515 4 770 577 188 8 0 chr4 24346683 24346816 -131283304 + Lx9 LINE L1 7502 7635 -9 4 770 716 285 62 62 chr4 24346816 24346876 -131283244 + L1MA5 LINE L1 5786 5847 -453 4 770 2454 223 66 5 chr4 24347227 24348119 -131282001 + L1_Rod LINE L1 783 1727 -4120 4 770 249 42 20 41 chr4 24348119 24348168 -131281952 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 770 2454 201 58 6 chr4 24348168 24348315 -131281805 + L1_Rod LINE L1 1728 1885 -3962 4 770 2262 178 76 6 chr4 24348317 24348670 -131281450 + Lx9 LINE L1 7097 7456 -188 4 770 369 62 0 0 chr4 24348670 24348718 -131281402 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 770 2262 178 76 6 chr4 24348718 24348866 -131281254 + Lx9 LINE L1 7457 7633 -11 4 770 410 246 60 16 chr4 24348915 24349097 -131281023 + L1_Rod LINE L1 1874 2063 -3784 4 770 1702 110 4 0 chr4 24349097 24349334 -131280786 + ORR1A2 LTR MaLR 82 319 -8 4 770 237 135 27 0 chr4 24349338 24349375 -131280745 - Lx5 LINE L1 -751 6299 6262 4 770 590 250 112 16 chr4 24349361 24349548 -131280572 + Lx5 LINE L1 6835 7039 -11 4 770 385 236 58 139 chr4 24349591 24349763 -131280357 - MTE2b LTR MaLR -221 158 1 4 770 1364 131 122 144 chr4 24349843 24350246 -131279874 + RLTR23 LTR ERV1 1 394 -36 4 770 609 149 12 6 chr4 24350350 24350512 -131279608 + (CATA)n Simple_repeat Simple_repeat 2 164 0 4 770 6275 138 47 17 chr4 24351006 24352077 -131278043 - RLTR25A LTR ERVK 0 1103 1 4 770 1968 174 25 23 chr4 24352344 24352737 -131277383 + ORR1B1 LTR MaLR 1 394 0 4 770 428 0 19 0 chr4 24352775 24352827 -131277293 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 4 770 1113 68 14 0 chr4 24354020 24354166 -131275954 + B1_Mus1 SINE Alu 1 148 0 4 770 284 226 0 0 chr4 24354256 24354309 -131275811 + MER5A1 DNA MER1_type 83 135 -31 4 770 240 35 0 0 chr4 24354615 24354644 -131275476 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 770 212 286 30 60 chr4 24355675 24355742 -131274378 - B4A SINE B4 -158 134 70 4 770 441 179 14 20 chr4 24357914 24358062 -131272058 + GA-rich Low_complexity Low_complexity 2 148 0 4 770 373 308 169 66 chr4 24358904 24359252 -131270868 + RMER15 LTR ERVL 187 570 -5 4 770 184 319 43 14 chr4 24359373 24359443 -131270677 + MIRc SINE MIR 92 163 -105 4 770 219 273 0 0 chr4 24359453 24359497 -131270623 + B4A SINE B4 14 57 -235 4 770 236 284 236 0 chr4 24359516 24359643 -131270477 + B4A SINE B4 129 285 -7 4 770 218 191 0 0 chr4 24359770 24359812 -131270308 + L2b LINE L2 3113 3154 -221 4 770 293 328 70 56 chr4 24359906 24360048 -131270072 + MER20 DNA MER1_type 1 144 -75 4 770 492 48 0 0 chr4 24360225 24360288 -131269832 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 770 216 200 0 24 chr4 24360320 24360361 -131269759 - RSINE1 SINE B4 -33 132 93 4 770 6717 143 66 1 chr4 24360361 24361156 -131268964 + L1_Mus4 LINE L1 4913 5737 -146 4 770 522 0 0 0 chr4 24361156 24361214 -131268906 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 770 6717 88 52 8 chr4 24361214 24362074 -131268046 + L1_Mus4 LINE L1 5738 6630 -6 4 770 365 250 51 20 chr4 24362082 24362180 -131267940 - RSINE1 SINE B4 -62 103 3 4 770 244 336 9 0 chr4 24362206 24362313 -131267807 + L1MC3 LINE L1 6870 6977 -808 4 770 799 40 40 0 chr4 24362613 24362737 -131267383 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 4 770 806 251 80 16 chr4 24362863 24363180 -131266940 - MTD LTR MaLR 0 421 1 4 770 309 311 0 0 chr4 24363184 24363258 -131266862 - MTB_Mm LTR MaLR -56 351 278 4 770 756 263 26 5 chr4 24363265 24363456 -131266664 + RMER10B LTR ERVL 7 201 -197 4 770 1964 142 158 71 chr4 24363540 24363950 -131266170 - RLTR41 LTR ERV1 0 446 1 4 770 1165 62 7 0 chr4 24364703 24364849 -131265271 + B1_Mm SINE Alu 1 147 0 4 770 711 140 18 0 chr4 24365370 24365484 -131264636 + ORR1D1 LTR MaLR 1 116 -258 4 770 29441 104 30 3 chr4 24365499 24371499 -131258621 - L1_Mus1 LINE L1 -3 6564 390 4 770 731 177 64 19 chr4 24371499 24371756 -131258364 + ORR1D1 LTR MaLR 52 384 0 4 770 371 304 0 10 chr4 24371756 24371858 -131258262 + MTE2a LTR MaLR 265 365 -14 4 770 1330 188 170 97 chr4 24372340 24372711 -131257409 + MT2A LTR ERVL 1 398 -135 4 770 274 229 14 0 chr4 24372962 24373032 -131257088 + MT2A LTR ERVL 406 476 -57 4 770 342 113 0 0 chr4 24373098 24373176 -131256944 + MT2A LTR ERVL 467 555 0 4 770 272 147 0 13 chr4 24373441 24373517 -131256603 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 4 770 603 0 0 0 chr4 24373599 24373666 -131256454 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 770 226 292 31 0 chr4 24373731 24373785 -131256335 + ORR1B2-int LTR MaLR 1 56 -1314 4 770 236 192 0 71 chr4 24373785 24373841 -131256279 + ORR1B2 LTR MaLR 3 54 -313 4 770 985 238 22 4 chr4 24373877 24374105 -131256015 + ORR1B2-int LTR MaLR 1 232 -1277 4 770 331 290 60 77 chr4 24374123 24374291 -131255829 - RLTR23 LTR ERV1 -19 411 247 4 770 288 140 0 0 chr4 24374385 24374435 -131255685 + Lx2 LINE L1 6944 6993 -4 4 770 780 246 15 60 chr4 24374449 24374648 -131255472 + ORR1B2 LTR MaLR 17 206 -161 4 770 763 159 110 0 chr4 24374816 24374961 -131255159 + ORR1B2 LTR MaLR 218 378 0 4 770 2097 186 69 2 chr4 24376313 24376540 -131253580 - MTC LTR MaLR 0 421 180 4 770 1732 72 0 25 chr4 24376540 24376784 -131253336 - L1Md_F2 LINE L1 0 6582 6345 4 770 2097 186 69 2 chr4 24376784 24376949 -131253171 - MTC LTR MaLR -242 179 4 4 770 2053 127 9 9 chr4 24377183 24377502 -131252618 + ORR1A2 LTR MaLR 1 319 -8 4 770 591 45 0 43 chr4 24378106 24378199 -131251921 + L1Md_T LINE L1 6493 6581 -1 4 770 704 276 85 28 chr4 24378335 24378847 -131251273 + L1MA5A LINE L1 5313 5865 -432 4 771 256 212 35 12 chr4 24379478 24379589 -131250531 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 771 362 295 35 29 chr4 24379615 24379995 -131250125 - L1_Mur3 LINE L1 -2727 3416 3034 4 771 433 199 216 6 chr4 24380030 24380197 -131249923 + L1_Mur3 LINE L1 5008 5209 -671 4 771 7655 68 11 0 chr4 24380233 24381633 -131248487 + L1_Mus1 LINE L1 5146 6567 0 4 771 683 189 45 20 chr4 24381645 24381845 -131248275 + L1_Mur3 LINE L1 5284 5488 -392 4 771 270 0 0 0 chr4 24381955 24381985 -131248135 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 771 333 0 0 0 chr4 24381985 24382021 -131248099 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 771 1427 224 185 6 chr4 24382021 24382367 -131247753 + MTC LTR MaLR 6 413 -8 4 771 261 135 0 0 chr4 24382430 24382482 -131247638 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 771 2465 289 54 20 chr4 24382517 24383400 -131246720 + Lx8 LINE L1 6245 7157 -316 4 771 566 217 62 37 chr4 24383406 24383549 -131246571 + RMER20B LTR ERVK 1 147 -369 4 771 569 262 165 8 chr4 24383656 24383898 -131246222 + RMER20B LTR ERVK 124 403 -224 4 771 427 322 16 11 chr4 24383968 24384153 -131245967 + Lx8 LINE L1 7165 7350 -123 4 771 627 229 154 18 chr4 24384297 24384466 -131245654 + MTD LTR MaLR 223 414 -5 4 771 855 272 41 26 chr4 24385217 24385479 -131244641 - Charlie12 DNA MER1_type -3 2870 2605 4 771 1036 260 79 62 chr4 24385479 24385832 -131244288 - ORR1E LTR MaLR 0 359 1 4 771 4590 160 52 31 chr4 24385966 24386813 -131243307 + RMER19B LTR ERVK 20 884 -18 4 771 11013 5 0 0 chr4 24386814 24388103 -131242017 + L1Md_A LINE L1 4298 5586 -297 4 771 9053 3 0 0 chr4 24388103 24389099 -131241021 + L1Md_A LINE L1 5587 6582 0 4 771 603 39 0 0 chr4 24389136 24389214 -131240906 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 4 771 887 228 6 0 chr4 24389214 24389376 -131240744 - B3 SINE B2 -53 163 1 4 771 805 269 138 0 chr4 24389381 24389798 -131240322 + Lx6 LINE L1 6180 6866 -594 4 771 236 254 46 62 chr4 24389798 24389928 -131240192 + RLTR12B LTR ERVK 189 316 -212 4 771 968 234 52 28 chr4 24389930 24390220 -131239900 + Lx6 LINE L1 7030 7326 -134 4 771 13356 67 1 8 chr4 24390212 24391540 -131238580 - L1Md_F2 LINE L1 -12 6570 5265 4 771 1151 74 0 0 chr4 24391540 24391688 -131238432 - B1_Mus1 SINE Alu 0 148 1 4 771 13356 65 1 12 chr4 24391688 24392896 -131237224 - L1Md_F2 LINE L1 -619 5264 4058 4 771 29218 66 1 4 chr4 24392904 24396950 -131233170 + L1Md_F2 LINE L1 1552 5586 -297 4 771 8132 46 0 1 chr4 24396950 24397943 -131232177 + L1Md_F2 LINE L1 5587 6578 -4 4 771 2502 38 3 0 chr4 24397945 24398262 -131231858 + L1Md_F2 LINE L1 5269 5586 -297 4 771 7821 46 17 11 chr4 24398262 24399252 -131230868 + L1Md_F2 LINE L1 5587 6582 0 4 771 866 112 0 0 chr4 24399259 24399411 -131230709 + MusHAL1 LINE L1 548 699 -2655 4 771 2826 36 194 0 chr4 24399411 24399776 -131230344 - RLTR10C LTR ERVK 0 436 1 4 771 7693 33 3 0 chr4 24399776 24400709 -131229411 - MMERVK10C-int LTR ERVK 0 7581 6646 4 771 40132 38 1 1 chr4 24400695 24405634 -131224486 - MMERVK10C-int LTR ERVK -1771 5810 870 4 771 2536 87 53 3 chr4 24405632 24406012 -131224108 - MMERVK10C-int LTR ERVK -7182 399 1 4 771 2858 38 191 0 chr4 24406012 24406378 -131223742 - RLTR10C LTR ERVK 0 436 1 4 771 21463 102 121 44 chr4 24406378 24407087 -131223033 + L1_Mus2 LINE L1 1254 2050 -4516 4 771 300 281 7 0 chr4 24407087 24407119 -131223001 + ORR1B1-int LTR MaLR 615 647 -862 4 771 1026 122 0 0 chr4 24407119 24407266 -131222854 + B1_Mus2 SINE Alu 1 147 0 4 771 21463 102 121 44 chr4 24407266 24411112 -131219008 + L1_Mus2 LINE L1 2051 6380 -186 4 771 5018 79 56 183 chr4 24411112 24412135 -131217985 - RLTR13B1 LTR ERVK 0 893 1 4 771 2577 80 53 0 chr4 24412135 24412472 -131217648 + RLTR10D LTR ERVK 5 359 0 4 771 6458 73 26 39 chr4 24412472 24412662 -131217458 + L1_Mus2 LINE L1 6381 6565 -1 4 771 193 269 25 25 chr4 24412771 24412851 -131217269 + L3 LINE CR1 2469 2548 -1941 5 771 382 293 84 41 chr4 24413149 24413516 -131216604 - L1M2 LINE L1 -2402 4147 3765 5 771 240 231 39 0 chr4 24413542 24413594 -131216526 - B1_Mus1 SINE Alu -93 55 2 5 771 309 269 106 36 chr4 24413604 24413889 -131216231 - L1M3 LINE L1 -3108 3032 2661 5 771 610 244 147 85 chr4 24414023 24414363 -131215757 + RLTR9A LTR ERVK 8 368 0 5 771 430 313 106 36 chr4 24414385 24414855 -131215265 - L1M2 LINE L1 -3585 3260 2753 5 771 624 286 116 53 chr4 24415060 24415531 -131214589 + RMER20A LTR ERVK 1 515 -1 5 771 312 290 34 14 chr4 24415544 24415691 -131214429 - L1M2 LINE L1 -4318 2531 2382 5 771 4330 164 14 21 chr4 24415830 24416647 -131213473 + RLTR22_Mur LTR ERVK 5 815 -1033 5 771 204 158 0 0 chr4 24416651 24416689 -131213431 + T-rich Low_complexity Low_complexity 1 38 0 5 771 3109 141 24 139 chr4 24416760 24417196 -131212924 - L1_Mur1 LINE L1 -207 5679 5246 5 771 269 281 0 79 chr4 24417196 24417285 -131212835 - RLTR22_Mur LTR ERVK -1721 127 46 5 771 3109 141 24 139 chr4 24417285 24417551 -131212569 - L1_Mur1 LINE L1 -207 5245 4980 5 771 2021 189 70 27 chr4 24417610 24418294 -131211826 - RMER3D-int LTR ERVK -1309 1533 378 5 771 893 238 87 52 chr4 24418303 24418896 -131211224 - RMER3D-int LTR ERVK -1692 1150 76 5 771 1272 66 0 0 chr4 24418896 24419063 -131211057 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 5 771 893 260 106 52 chr4 24419063 24419102 -131211018 - RMER3D-int LTR ERVK -2767 75 29 5 771 576 42 0 0 chr4 24419104 24419175 -131210945 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 5 771 2843 186 64 11 chr4 24419239 24419798 -131210322 - RLTR17 LTR ERVK 0 692 104 5 771 1210 171 43 0 chr4 24419821 24420055 -131210065 - L1_Mm LINE L1 -112 5771 5528 5 771 2547 69 0 28 chr4 24420055 24420413 -131209707 - LTRIS_Mus LTR ERV1 0 587 240 5 771 800 264 35 10 chr4 24420406 24420605 -131209515 - RMER20A LTR ERVK -312 204 1 5 771 26 30 0 0 chr4 24420686 24420719 -131209401 + AT_rich Low_complexity Low_complexity 1 33 0 5 771 760 265 54 57 chr4 24420988 24421268 -131208852 - B4 SINE B4 -13 279 1 5 771 261 139 0 0 chr4 24421295 24421338 -131208782 + (TTCTCC)n Simple_repeat Simple_repeat 1 43 0 5 771 322 303 179 15 chr4 24421352 24421553 -131208567 - L1M5 LINE L1 -2877 3269 3036 5 771 416 317 87 48 chr4 24421692 24421925 -131208195 - L1MD LINE L1 -3374 2772 2525 5 771 294 306 99 27 chr4 24421925 24422036 -131208084 + PB1 SINE Alu 5 123 -4 5 771 416 317 87 48 chr4 24422036 24422054 -131208066 - L1MD LINE L1 -3622 2524 2511 5 771 22 0 0 0 chr4 24422071 24422093 -131208027 + AT_rich Low_complexity Low_complexity 1 22 0 5 771 387 382 54 54 chr4 24422284 24422597 -131207523 + LTR33 LTR ERVL 160 472 -43 5 771 269 340 0 4 chr4 24425374 24425446 -131204674 - ID4 SINE ID -6 77 8 5 771 379 202 59 126 chr4 24425499 24425618 -131204502 - PB1D7 SINE Alu 0 120 10 5 771 779 235 75 27 chr4 24425726 24425914 -131204206 - B3 SINE B2 -17 199 3 5 771 1436 242 89 11 chr4 24426114 24426473 -131203647 - MTD LTR MaLR -14 405 19 5 771 2659 35 0 0 chr4 24426565 24426881 -131203239 - L1Md_A LINE L1 -1 6581 6266 5 771 599 48 57 9 chr4 24427807 24427913 -131202207 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 5 771 277 272 209 13 chr4 24427992 24428145 -131201975 - MER90 LTR ERV1 -392 183 1 5 771 1135 35 21 0 chr4 24428389 24428530 -131201590 - B1_Mur4 SINE Alu -5 145 2 5 771 1046 78 0 0 chr4 24429016 24429144 -131200976 + B1_Mus2 SINE Alu 1 128 -19 5 771 378 292 131 23 chr4 24429300 24429475 -131200645 + B3A SINE B2 2 195 -3 5 771 1165 61 0 7 chr4 24429485 24429633 -131200487 + B1_Mus1 SINE Alu 1 147 -1 5 771 299 176 189 105 chr4 24430665 24430760 -131199360 - ID_B1 SINE B4 -20 204 102 5 771 1226 41 0 0 chr4 24430924 24431071 -131199049 - B1_Mus1 SINE Alu 0 148 2 5 771 22 56 0 0 chr4 24431074 24431110 -131199010 + AT_rich Low_complexity Low_complexity 1 36 0 5 771 1100 218 0 5 chr4 24431433 24431636 -131198484 + B3 SINE B2 1 202 -14 5 771 291 175 0 0 chr4 24432084 24432141 -131197979 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 5 771 478 284 72 29 chr4 24432728 24432866 -131197254 + B1F1 SINE Alu 1 144 -5 5 771 636 250 0 0 chr4 24433031 24433163 -131196957 - B1_Mur4 SINE Alu -18 132 1 5 771 249 302 151 0 chr4 24433234 24433353 -131196767 - B4A SINE B4 -155 137 1 5 771 21 36 0 0 chr4 24433475 24433503 -131196617 + AT_rich Low_complexity Low_complexity 1 28 0 5 771 580 179 90 69 chr4 24433877 24434021 -131196099 - B1_Mur1 SINE Alu -1 148 2 5 771 180 0 0 0 chr4 24434119 24434139 -131195981 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 771 268 225 144 0 chr4 24434845 24434956 -131195164 - L1MA6 LINE L1 -55 6245 6119 5 771 510 57 0 0 chr4 24435095 24435165 -131194955 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 771 759 294 221 22 chr4 24435783 24436231 -131193889 - MLT2B4 LTR ERVL 0 520 18 5 771 261 0 0 0 chr4 24436262 24436291 -131193829 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 771 379 307 128 6 chr4 24436300 24436480 -131193640 + L1MC4a LINE L1 5817 6018 -1864 5 771 2286 222 185 14 chr4 24436861 24437697 -131192423 - Lx9 LINE L1 -265 7379 6401 5 771 1252 204 238 51 chr4 24437718 24438083 -131192037 - MT2A LTR ERVL 0 533 86 5 771 1053 59 0 22 chr4 24438083 24438222 -131191898 + B1_Mus2 SINE Alu 1 136 -11 5 771 1252 204 238 51 chr4 24438222 24438305 -131191815 - MT2A LTR ERVL -448 85 1 5 771 285 102 0 20 chr4 24438311 24438361 -131191759 - MERVL_2A-int LTR ERVL -7 5754 5706 5 771 271 194 13 40 chr4 24438361 24438436 -131191684 - ORR1A3-int LTR MaLR -1324 639 567 5 771 705 136 95 7 chr4 24438443 24438591 -131191529 - MERVL_2A-int LTR ERVL -139 5622 5462 5 771 1056 226 81 41 chr4 24438591 24439051 -131191069 - RLTR20C LTR ERVK 0 551 45 5 771 516 232 20 61 chr4 24439006 24439153 -131190967 - B1_Mur4 SINE Alu -9 141 1 5 771 656 264 82 31 chr4 24439165 24439520 -131190600 - L1_Rod LINE L1 -6493 679 307 5 771 982 153 119 21 chr4 24440089 24440283 -131189837 - URR1B DNA MER1_type -7 218 6 5 771 249 33 0 0 chr4 24440627 24440657 -131189463 + (CCA)n Simple_repeat Simple_repeat 3 32 0 5 771 436 313 228 48 chr4 24440936 24441179 -131188941 + L1MC4a LINE L1 6094 6367 -1515 5 771 264 233 128 43 chr4 24441179 24441273 -131188847 - PB1D10 SINE Alu -15 102 1 5 771 436 313 228 48 chr4 24441273 24441772 -131188348 + L1MC4a LINE L1 6368 6969 -913 5 771 414 304 87 8 chr4 24442094 24442347 -131187773 + L1MC4a LINE L1 7225 7512 -530 5 771 282 267 13 13 chr4 24443042 24443118 -131187002 + B1F SINE Alu 74 149 0 5 771 2344 49 3 0 chr4 24443350 24443636 -131186484 - L1_Mus1 LINE L1 0 6567 6281 5 771 1730 48 0 0 chr4 24443636 24443846 -131186274 + L1_Mus1 LINE L1 6037 6246 -321 5 771 285 347 60 13 chr4 24444532 24444681 -131185439 + MIR3 SINE MIR 42 197 -11 5 771 597 246 50 16 chr4 24444760 24444942 -131185178 + B3A SINE B2 1 188 -10 5 771 485 217 3 8 chr4 24445251 24445379 -131184741 + B1F SINE Alu 42 141 -8 5 771 30 0 0 0 chr4 24446123 24446153 -131183967 + AT_rich Low_complexity Low_complexity 1 30 0 5 771 258 211 0 0 chr4 24446322 24446379 -131183741 - Lx5 LINE L1 -1082 5968 5912 5 771 477 253 125 36 chr4 24446854 24447022 -131183098 - MLT1F LTR MaLR -29 519 337 5 771 333 68 0 0 chr4 24447406 24447450 -131182670 + (ATTG)n Simple_repeat Simple_repeat 4 47 0 5 771 359 231 144 0 chr4 24447453 24447557 -131182563 - B1_Mur1 SINE Alu -19 130 12 5 771 403 116 0 0 chr4 24447890 24447959 -131182161 + L1_Mur2 LINE L1 1627 1695 -4182 5 771 243 0 0 0 chr4 24449651 24449678 -131180442 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 771 693 36 0 0 chr4 24449678 24449761 -131180359 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 771 333 0 0 0 chr4 24451316 24451353 -131178767 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 771 329 288 115 12 chr4 24451572 24451737 -131178383 - B3A SINE B2 -15 183 2 5 771 336 394 66 59 chr4 24453235 24453677 -131176443 + L2 LINE L2 1981 2425 -994 5 771 307 333 17 42 chr4 24453891 24454010 -131176110 - RSINE1 SINE B4 0 165 50 5 771 4145 84 24 18 chr4 24454190 24454805 -131175315 - Lx3_Mus LINE L1 0 7009 6391 5 771 6741 79 117 25 chr4 24454805 24455833 -131174287 - L1_Mur1 LINE L1 -13 5873 4752 5 771 31 0 0 0 chr4 24456569 24456600 -131173520 + AT_rich Low_complexity Low_complexity 1 31 0 5 771 902 224 60 0 chr4 24456622 24456823 -131173297 - B3 SINE B2 -3 213 1 5 771 2497 140 28 74 chr4 24458321 24458821 -131171299 + RLTR12B LTR ERVK 52 528 0 5 771 798 170 50 0 chr4 24459122 24459263 -131170857 + B1_Mur3 SINE Alu 2 149 0 5 771 1017 281 104 0 chr4 24459355 24459690 -131170430 + ORR1D2 LTR MaLR 1 370 0 5 771 25 0 0 0 chr4 24459962 24459987 -131170133 + AT_rich Low_complexity Low_complexity 1 25 0 5 771 194 226 129 0 chr4 24460171 24460233 -131169887 - L3 LINE CR1 -2259 2230 2161 5 771 22 35 0 0 chr4 24460596 24460625 -131169495 + AT_rich Low_complexity Low_complexity 1 29 0 5 771 696 211 68 36 chr4 24460682 24460874 -131169246 - B3A SINE B2 0 198 1 5 771 630 152 0 9 chr4 24460906 24461012 -131169108 - B1_Mur3 SINE Alu -4 145 41 5 771 474 18 0 0 chr4 24461158 24461213 -131168907 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 771 224 347 128 8 chr4 24461441 24461566 -131168554 + B1F SINE Alu 1 140 -9 5 771 247 336 46 18 chr4 24461463 24461572 -131168548 + ID_B1 SINE B4 110 221 -3 5 771 232 297 11 11 chr4 24462151 24462243 -131167877 - MTEb LTR MaLR -13 366 275 5 771 353 368 164 17 chr4 24462675 24462907 -131167213 + B4A SINE B4 5 270 -22 5 771 23 33 0 0 chr4 24463926 24463956 -131166164 + AT_rich Low_complexity Low_complexity 1 30 0 5 771 321 68 0 0 chr4 24463956 24464000 -131166120 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 771 2012 89 11 3 chr4 24464057 24464339 -131165781 - Lx3A LINE L1 -101 6880 6597 5 771 715 204 53 106 chr4 24464846 24465016 -131165104 - B3A SINE B2 -24 174 14 5 771 191 125 0 24 chr4 24465700 24465741 -131164379 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 771 1275 104 0 29 chr4 24466771 24466978 -131163142 - L1Md_F2 LINE L1 0 6582 6382 6 771 379 284 287 7 chr4 24467909 24468334 -131161786 - L1M4 LINE L1 -496 5678 5137 6 771 589 224 161 98 chr4 24469054 24469247 -131160873 + B3 SINE B2 1 205 -11 6 771 1198 85 61 22 chr4 24469272 24469453 -131160667 + B2_Mm2 SINE B2 2 189 -6 6 771 384 259 165 0 chr4 24473151 24473321 -131156799 + Lx9 LINE L1 7409 7606 -38 6 771 22 0 0 0 chr4 24473932 24473954 -131156166 + AT_rich Low_complexity Low_complexity 1 22 0 6 771 1751 259 78 37 chr4 24473966 24474594 -131155526 - Lx9 LINE L1 -52 7592 6939 6 771 618 273 7 24 chr4 24474785 24474952 -131155168 - B3A SINE B2 -18 180 20 6 771 602 208 27 40 chr4 24475070 24475220 -131154900 - B1_Mur2 SINE Alu -1 148 1 6 771 205 87 64 21 chr4 24475417 24475464 -131154656 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 6 771 1030 38 0 22 chr4 24475464 24475598 -131154522 - B1_Mm SINE Alu 0 147 17 6 771 401 276 62 23 chr4 24475816 24475946 -131154174 + MIRb SINE MIR 93 227 -41 6 771 184 289 71 24 chr4 24475981 24476066 -131154054 + L3 LINE CR1 4124 4212 -277 6 771 223 241 121 0 chr4 24477230 24477288 -131152832 + B3A SINE B2 1 65 -133 6 771 549 240 55 60 chr4 24478990 24479172 -131150948 + B3A SINE B2 2 182 -16 6 771 419 273 60 8 chr4 24479668 24479801 -131150319 - B1_Mur1 SINE Alu -6 143 4 6 771 203 152 0 0 chr4 24480959 24480992 -131149128 + CT-rich Low_complexity Low_complexity 3 35 0 6 771 306 0 0 0 chr4 24483806 24483840 -131146280 + (T)n Simple_repeat Simple_repeat 1 34 0 6 771 802 283 24 50 chr4 24484472 24484770 -131145350 - B4 SINE B4 -2 290 1 6 771 764 186 0 48 chr4 24486403 24486550 -131143570 + B1_Mus2 SINE Alu 8 147 0 6 771 24 0 0 0 chr4 24486627 24486651 -131143469 + AT_rich Low_complexity Low_complexity 1 24 0 6 771 318 26 0 0 chr4 24486796 24486835 -131143285 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 771 904 153 0 0 chr4 24486835 24486972 -131143148 - B1_Mus2 SINE Alu -9 138 2 6 771 281 336 118 28 chr4 24488876 24489020 -131141100 + RSINE1 SINE B4 3 159 -6 6 771 1153 110 128 15 chr4 24490082 24490285 -131139835 + URR1A DNA MER1_type 1 226 0 6 771 5224 78 16 7 chr4 24490330 24491065 -131139055 - L1_Mus3 LINE L1 0 6638 5897 6 771 711 131 400 0 chr4 24494478 24494638 -131135482 - URR1B DNA MER1_type -1 224 1 6 771 185 0 40 0 chr4 24494859 24494884 -131135236 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 771 403 260 182 40 chr4 24495495 24495671 -131134449 + MIRb SINE MIR 68 268 0 6 771 282 278 87 0 chr4 24496929 24497055 -131133065 - L1MA6 LINE L1 -17 6283 6147 6 771 357 164 0 43 chr4 24497090 24497160 -131132960 - tRNA-Ala-GCY_ tRNA tRNA -1 74 8 6 771 359 232 0 0 chr4 24497104 24497173 -131132947 - ID4_ SINE ID -14 69 1 6 771 817 307 39 9 chr4 24497362 24497595 -131132525 - B4A SINE B4 -16 276 37 6 771 2199 144 88 3 chr4 24497595 24497971 -131132149 + MTC LTR MaLR 1 408 -13 6 771 1237 236 47 21 chr4 24498017 24498355 -131131765 - L1MA6 LINE L1 -468 5832 5486 6 771 641 207 128 40 chr4 24498639 24499094 -131131026 - L1MA6 LINE L1 -819 5481 4975 6 771 328 288 19 9 chr4 24499141 24499246 -131130874 - PB1D10 SINE Alu -8 109 4 6 771 3089 27 46 0 chr4 24499456 24499824 -131130296 + L1Md_F2 LINE L1 6180 6564 -18 6 771 477 0 0 0 chr4 24499826 24499879 -131130241 + (TAA)n Simple_repeat Simple_repeat 3 55 0 6 771 180 0 0 0 chr4 24500063 24500083 -131130037 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 771 947 96 57 19 chr4 24500099 24500258 -131129862 + L1_Mus3 LINE L1 6464 6628 -10 2 771 192 40 0 0 chr4 24500606 24500631 -131129489 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 771 25 31 0 0 chr4 24501892 24501924 -131128196 + AT_rich Low_complexity Low_complexity 1 32 0 4 771 28 29 0 0 chr4 24502151 24502186 -131127934 + AT_rich Low_complexity Low_complexity 1 35 0 5 771 451 358 191 15 chr4 24502798 24503467 -131126653 - L2 LINE L2 -511 2908 2122 6 771 28 29 0 0 chr4 24503489 24503524 -131126596 + AT_rich Low_complexity Low_complexity 1 35 0 7 771 2075 89 48 21 chr4 24503524 24503855 -131126265 - Lx3A LINE L1 -2 6979 6640 8 771 915 115 55 3 chr4 24503866 24504043 -131126077 - RMER6C LTR ERVK -46 644 439 9 771 3098 82 12 70 chr4 24504066 24504550 -131125570 - RLTR1B LTR ERV1 -54 458 3 1 771 1463 136 92 35 chr4 24504559 24504842 -131125278 - RMER6C LTR ERVK -324 366 68 9 771 246 373 169 0 chr4 24504903 24505021 -131125099 - B4A SINE B4 -121 171 34 1 771 233 323 65 60 chr4 24505032 24505200 -131124920 - L2 LINE L2 -2451 968 800 6 771 486 282 38 25 chr4 24505214 24505374 -131124746 - L2 LINE L2 -2733 686 525 6 771 351 44 0 0 chr4 24506215 24506260 -131123860 + (TATG)n Simple_repeat Simple_repeat 3 47 0 1 771 1481 59 5 0 chr4 24506746 24506932 -131123188 - B2_Mm1t SINE B2 -6 187 1 1 771 21 0 0 0 chr4 24507414 24507435 -131122685 + AT_rich Low_complexity Low_complexity 1 21 0 1 771 1184 48 0 7 chr4 24507808 24507954 -131122166 + B1_Mus1 SINE Alu 2 146 -2 1 771 308 304 78 9 chr4 24509841 24509957 -131120163 - MER77 LTR ERVL -171 436 313 1 771 632 255 67 7 chr4 24510263 24510413 -131119707 + B3 SINE B2 1 159 -57 1 96 303 177 53 0 chr4 24510434 24510508 -131119612 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 772 1977 161 76 3 chr4 24510508 24510875 -131119245 - ORR1B1 LTR MaLR 0 394 1 1 772 303 177 53 0 chr4 24510875 24510913 -131119207 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 772 22 35 0 0 chr4 24511158 24511187 -131118933 + AT_rich Low_complexity Low_complexity 1 29 0 2 772 1245 254 136 66 chr4 24511356 24511958 -131118162 + Charlie1a DNA MER1_type 441 1084 -371 2 772 835 160 7 14 chr4 24513021 24513167 -131116953 - B1_Mus1 SINE Alu -1 147 3 2 772 1481 192 14 7 chr4 24515674 24515957 -131114163 - MTC LTR MaLR -134 287 3 2 772 198 0 0 0 chr4 24516424 24516446 -131113674 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2 772 307 288 68 9 chr4 24517417 24517545 -131112575 + MIRb SINE MIR 97 236 -26 2 772 27 29 0 0 chr4 24518819 24518853 -131111267 + AT_rich Low_complexity Low_complexity 1 34 0 2 772 759 199 203 6 chr4 24518914 24519091 -131111029 + B3 SINE B2 2 213 -3 2 772 513 267 105 6 chr4 24520310 24520491 -131109629 - B3 SINE B2 -13 203 5 2 772 683 267 98 28 chr4 24520789 24521043 -131109077 - B4 SINE B4 -18 274 3 3 772 351 288 16 25 chr4 24521274 24521395 -131108725 - PB1D9 SINE Alu 0 120 1 3 772 205 328 0 76 chr4 24522226 24522292 -131107828 - L2a LINE L2 -28 3398 3338 3 772 342 0 0 0 chr4 24524028 24524066 -131106054 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 772 392 230 71 110 chr4 24524407 24524534 -131105586 + MER44D DNA MER2_type 22 143 -562 3 772 926 189 0 0 chr4 24524813 24524961 -131105159 + B1_Mur3 SINE Alu 2 149 0 3 772 789 80 53 0 chr4 24525434 24525547 -131104573 + PB1D9 SINE Alu 2 120 0 3 772 294 95 0 0 chr4 24525555 24525597 -131104523 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 3 772 257 300 48 39 chr4 24527047 24527151 -131102969 + PB1D10 SINE Alu 1 105 -12 3 772 1791 170 61 18 chr4 24528063 24528392 -131101728 - MTC LTR MaLR -39 382 40 3 772 1176 199 59 22 chr4 24528792 24528879 -131101241 - RLTR20A LTR ERVK 0 541 450 4 772 270 56 0 0 chr4 24528879 24528915 -131101205 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 772 1176 213 62 23 chr4 24528915 24529131 -131100989 - RLTR20A LTR ERVK -95 482 258 4 772 360 111 0 0 chr4 24529929 24529983 -131100137 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 772 180 239 87 0 chr4 24530860 24530906 -131099214 + MIRc SINE MIR 171 220 -48 4 772 1166 248 136 6 chr4 24530967 24531291 -131098829 + ORR1D2 LTR MaLR 1 366 -4 4 772 228 35 0 0 chr4 24531308 24531337 -131098783 + (TCCCC)n Simple_repeat Simple_repeat 5 33 0 4 772 1226 48 0 0 chr4 24531497 24531644 -131098476 + B1_Mus2 SINE Alu 1 147 0 4 772 238 236 110 14 chr4 24531999 24532072 -131098048 + ID4_ SINE ID 3 82 -1 4 772 308 272 8 20 chr4 24532189 24532299 -131097821 + B1F SINE Alu 12 120 0 4 772 856 161 47 7 chr4 24532711 24533005 -131097115 + ORR1D1 LTR MaLR 6 382 -2 4 772 8258 78 31 11 chr4 24533520 24534668 -131095452 + Lx3_Mus LINE L1 5837 7008 -1 5 772 681 164 24 8 chr4 24534888 24535011 -131095109 - B1_Mur4 SINE Alu -11 139 15 5 772 568 193 259 6 chr4 24535429 24535591 -131094529 - Lx5 LINE L1 0 7050 6848 5 772 2304 154 35 26 chr4 24535588 24536048 -131094072 + Lx4B LINE L1 6381 6844 -214 5 772 543 31 0 0 chr4 24536153 24536218 -131093902 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 772 1757 291 120 13 chr4 24536218 24536967 -131093153 - Lx8 LINE L1 -146 7327 6499 5 772 392 321 23 64 chr4 24537265 24537438 -131092682 + B3A SINE B2 27 192 -6 5 772 405 220 157 20 chr4 24537478 24537631 -131092489 + L1_Mur3 LINE L1 5332 5505 -375 5 772 1827 153 85 9 chr4 24537641 24537971 -131092149 - ORR1B2 LTR MaLR -8 359 5 5 772 1168 187 89 34 chr4 24537971 24538577 -131091543 + RMER17B LTR ERVK 1 958 0 5 772 252 250 182 18 chr4 24538628 24538738 -131091382 + L1_Mur3 LINE L1 5553 5680 -197 5 772 1208 237 110 0 chr4 24538777 24539068 -131091052 + MTD LTR MaLR 34 356 -63 6 772 1771 136 3 13 chr4 24539225 24539523 -131090597 - Lx2A1 LINE L1 -1 7007 6713 6 772 243 0 0 0 chr4 24540268 24540295 -131089825 + (T)n Simple_repeat Simple_repeat 1 27 0 6 772 749 32 0 0 chr4 24540295 24540388 -131089732 - B1_Mm SINE Alu 0 147 55 6 772 492 18 0 0 chr4 24540811 24540868 -131089252 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 772 378 0 0 0 chr4 24540868 24540910 -131089210 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 772 482 229 10 59 chr4 24540910 24541012 -131089108 - RSINE1 SINE B4 -41 124 28 6 772 242 147 33 206 chr4 24541132 24541225 -131088895 - B1F1 SINE Alu -20 97 9 6 772 213 343 44 71 chr4 24541605 24541718 -131088402 - PB1D10 SINE Alu -7 110 1 6 772 430 317 24 16 chr4 24541718 24541795 -131088325 - ID SINE ID -145 79 2 6 772 229 122 73 0 chr4 24544783 24544824 -131085296 - ORR1E LTR MaLR -5 354 311 7 772 441 219 31 0 chr4 24544843 24544939 -131085181 - MTD LTR MaLR -316 105 7 7 772 3430 207 122 64 chr4 24544964 24546152 -131083968 - MTD-int LTR MaLR -1 1257 1 7 772 1309 182 88 33 chr4 24546156 24546428 -131083692 - MTD LTR MaLR -8 411 125 7 772 938 198 94 0 chr4 24546479 24546681 -131083439 + URR1A DNA MER1_type 5 225 -1 7 772 274 211 0 0 chr4 24546701 24546753 -131083367 + RMER15 LTR ERVL 1 52 -523 7 772 809 30 0 0 chr4 24546744 24546844 -131083276 + B1_Mm SINE Alu 48 147 0 7 772 250 24 47 23 chr4 24546849 24546892 -131083228 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 772 1701 240 72 63 chr4 24547013 24547555 -131082565 + RMER15 LTR ERVL 27 573 -2 7 772 234 0 0 0 chr4 24547853 24547879 -131082241 + (T)n Simple_repeat Simple_repeat 1 26 0 7 772 338 308 89 37 chr4 24548474 24548609 -131081511 - MIRb SINE MIR -73 195 54 7 772 575 333 23 28 chr4 24549764 24549940 -131080180 + B3A SINE B2 1 175 -23 7 772 2009 211 59 28 chr4 24549945 24550452 -131079668 + RLTR11A2 LTR ERVK 5 527 0 7 772 813 266 27 38 chr4 24550607 24550900 -131079220 + B4A SINE B4 2 291 -1 8 772 426 186 305 6 chr4 24551483 24551630 -131078490 + B3A SINE B2 3 193 -23 8 772 622 182 24 0 chr4 24553132 24553258 -131076862 + B1_Mur1 SINE Alu 2 130 -19 8 772 258 176 0 0 chr4 24553263 24553314 -131076806 + (ATG)n Simple_repeat Simple_repeat 1 51 0 8 772 21 0 0 0 chr4 24555454 24555475 -131074645 + AT_rich Low_complexity Low_complexity 1 21 0 8 772 384 267 240 17 chr4 24555523 24555702 -131074418 + ID_B1 SINE B4 5 223 -1 8 772 699 286 0 27 chr4 24556050 24556269 -131073851 - B3 SINE B2 -3 213 1 8 772 606 240 56 0 chr4 24557039 24557164 -131072956 + B1_Mur1 SINE Alu 2 133 -16 8 772 405 0 0 0 chr4 24559012 24559057 -131071063 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 772 813 293 96 96 chr4 24561268 24561683 -131068437 + MER67D LTR ERV1 1 415 -99 8 772 25 0 0 0 chr4 24563010 24563035 -131067085 + AT_rich Low_complexity Low_complexity 1 25 0 9 772 383 313 26 45 chr4 24563996 24564150 -131065970 - RSINE1 SINE B4 -14 151 1 9 772 6727 37 4 4 chr4 24564708 24565472 -131064648 - L1Md_F2 LINE L1 0 6582 5819 9 772 567 251 107 68 chr4 24565539 24565554 -131064566 - B4 SINE B4 -63 229 217 9 772 676 20 29 19 chr4 24565554 24565658 -131064462 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 9 772 1086 51 0 0 chr4 24565658 24565794 -131064326 + (TTCCC)n Simple_repeat Simple_repeat 4 140 0 9 772 567 251 107 68 chr4 24565794 24565982 -131064138 - B4 SINE B4 -76 216 18 9 772 210 154 0 0 chr4 24565988 24566027 -131064093 + T-rich Low_complexity Low_complexity 1 39 0 9 772 451 291 93 16 chr4 24566258 24566387 -131063733 - B1F SINE Alu -9 140 2 9 772 220 331 102 7 chr4 24567579 24567716 -131062404 + MIRc SINE MIR 4 153 -115 9 772 330 369 25 0 chr4 24568919 24569076 -131061044 - MamRep605 Unknown Unknown -249 627 467 9 772 348 169 26 0 chr4 24569926 24570003 -131060117 - Lx9 LINE L1 -1 7643 7565 1 772 570 54 0 0 chr4 24570034 24570108 -131060012 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 772 470 260 85 47 chr4 24572546 24572675 -131057445 - B1_Mur1 SINE Alu 0 149 16 1 772 719 210 21 14 chr4 24572731 24572876 -131057244 + B1_Mur3 SINE Alu 1 146 -3 1 772 200 35 35 0 chr4 24573537 24573566 -131056554 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 1 772 21 57 0 0 chr4 24575023 24575058 -131055062 + AT_rich Low_complexity Low_complexity 1 35 0 1 772 235 347 40 53 chr4 24579571 24579723 -131050397 - MER5A1 DNA MER1_type -11 155 6 1 772 459 282 21 25 chr4 24579747 24579898 -131050222 - ORR1E LTR MaLR -14 365 209 1 772 612 299 61 31 chr4 24579962 24580190 -131049930 - ORR1E LTR MaLR -122 237 3 1 772 1073 186 48 57 chr4 24580337 24580565 -131049555 + URR1A DNA MER1_type 1 226 0 1 772 558 0 0 0 chr4 24580923 24580985 -131049135 + (CCA)n Simple_repeat Simple_repeat 1 62 0 1 772 1443 77 22 5 chr4 24582128 24582312 -131047808 + B2_Mm2 SINE B2 2 188 -7 1 772 477 0 0 0 chr4 24582326 24582379 -131047741 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 772 1166 37 0 0 chr4 24582391 24582525 -131047595 + L1Md_F2 LINE L1 5453 5586 -297 1 772 8537 44 12 0 chr4 24582525 24583497 -131046623 + L1Md_F2 LINE L1 5587 6570 -12 1 772 410 218 9 0 chr4 24583500 24583610 -131046510 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 772 1220 61 7 26 chr4 24583811 24583962 -131046158 + B1_Mus1 SINE Alu 1 148 0 1 772 200 34 0 33 chr4 24583965 24583995 -131046125 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 772 6069 44 0 0 chr4 24584351 24585037 -131045083 + L1Md_T LINE L1 5897 6582 0 1 772 324 274 9 54 chr4 24585074 24585186 -131044934 + RMER15 LTR ERVL 361 467 -108 1 772 183 205 0 0 chr4 24585588 24585627 -131044493 + T-rich Low_complexity Low_complexity 1 39 0 1 772 1254 81 0 0 chr4 24586074 24586222 -131043898 + B1_Mus1 SINE Alu 1 148 0 1 772 1737 126 89 0 chr4 24587137 24587407 -131042713 - Lx4A LINE L1 -3 7055 6762 1 772 753 12 0 0 chr4 24587702 24587788 -131042332 + (GA)n Simple_repeat Simple_repeat 1 86 0 1 772 22 0 0 0 chr4 24587976 24587998 -131042122 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 3453 69 2 23 chr4 24588046 24588479 -131041641 + L1_Mus1 LINE L1 6144 6567 0 1 772 1219 253 138 3 chr4 24588639 24588964 -131041156 - MTD LTR MaLR -50 369 1 1 772 1707 131 58 48 chr4 24589110 24589423 -131040697 - ORR1A2 LTR MaLR -8 319 4 1 772 301 89 0 0 chr4 24590467 24590512 -131039608 + Lx2A LINE L1 6959 7003 -5 1 772 1305 231 85 9 chr4 24593014 24593354 -131036766 + ORR1D2 LTR MaLR 1 366 -4 1 772 28 91 0 0 chr4 24593818 24593895 -131036225 + AT_rich Low_complexity Low_complexity 1 77 0 1 772 8665 24 0 0 chr4 24594115 24595268 -131034852 - L1Md_A LINE L1 0 6582 5430 1 772 961 75 0 15 chr4 24595268 24595403 -131034717 + B1_Mm SINE Alu 3 135 -12 1 772 868 49 0 16 chr4 24595403 24595527 -131034593 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 1 772 282 56 0 0 chr4 24595668 24595704 -131034416 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1 772 180 111 0 0 chr4 24595705 24595732 -131034388 + (T)n Simple_repeat Simple_repeat 1 27 0 1 772 554 233 298 11 chr4 24595898 24596076 -131034044 + B4 SINE B4 42 270 -22 1 772 422 75 0 15 chr4 24596076 24596144 -131033976 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 772 216 0 0 0 chr4 24596150 24596174 -131033946 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 772 247 188 62 0 chr4 24601004 24601052 -131029068 - L1MEg LINE L1 -4006 2078 2028 1 772 285 98 0 0 chr4 24601241 24601282 -131028838 + (A)n Simple_repeat Simple_repeat 1 41 0 1 772 190 282 176 0 chr4 24603329 24603414 -131026706 - L2b LINE L2 -62 3313 3214 1 772 720 97 39 50 chr4 24603661 24603873 -131026247 + ORR1B1 LTR MaLR 1 326 0 1 772 502 146 165 31 chr4 24604348 24604475 -131025645 - Lx7 LINE L1 0 7696 7553 1 772 256 330 39 0 chr4 24604507 24604610 -131025510 - L1MA9 LINE L1 -26 6286 6180 1 772 852 51 76 17 chr4 24605193 24605312 -131024808 + B1_Mus1 SINE Alu 22 147 -1 1 772 654 255 35 0 chr4 24605329 24605470 -131024650 + B1_Mur1 SINE Alu 3 148 -1 1 772 207 0 0 0 chr4 24605482 24605505 -131024615 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 772 450 0 0 0 chr4 24607742 24607792 -131022328 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 772 1773 155 41 6 chr4 24607948 24608132 -131021988 + RMER17C LTR ERVK 1 188 -222 1 772 990 97 0 0 chr4 24608132 24608276 -131021844 + (TTC)n Simple_repeat Simple_repeat 3 146 0 1 772 1773 155 41 6 chr4 24608276 24608435 -131021685 + RMER17C LTR ERVK 189 355 -55 1 772 967 134 251 0 chr4 24609624 24609795 -131020325 - B3 SINE B2 -1 215 2 1 772 927 259 57 21 chr4 24609920 24610299 -131019821 + MT2B LTR ERVL 1 561 -40 1 772 27 0 0 0 chr4 24610299 24610326 -131019794 + AT_rich Low_complexity Low_complexity 1 27 0 1 772 1537 306 53 10 chr4 24611316 24611802 -131018318 - Lx8 LINE L1 -152 7321 6815 1 772 27 49 0 0 chr4 24612509 24612550 -131017570 + AT_rich Low_complexity Low_complexity 1 41 0 1 772 232 49 48 24 chr4 24612670 24612712 -131017408 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 772 1105 22 8 0 chr4 24612713 24612847 -131017273 - B1_Mm SINE Alu -1 146 12 1 772 435 322 50 39 chr4 24612927 24613208 -131016912 - B4A SINE B4 -8 284 1 1 772 1007 245 31 38 chr4 24613272 24613565 -131016555 - B4A SINE B4 -1 291 1 1 772 211 306 16 0 chr4 24614002 24614064 -131016056 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 1 772 838 166 18 0 chr4 24614101 24614270 -131015850 + GA-rich Low_complexity Low_complexity 3 174 0 1 772 345 266 161 49 chr4 24615409 24615571 -131014549 - B2_Mm2 SINE B2 -9 186 7 1 772 294 29 0 0 chr4 24616292 24616327 -131013793 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 772 1059 104 0 0 chr4 24616355 24616519 -131013601 + (TCTA)n Simple_repeat Simple_repeat 2 165 0 1 772 239 315 0 14 chr4 24616666 24616740 -131013380 + RSINE1 SINE B4 3 75 -90 1 772 183 156 0 0 chr4 24616791 24616823 -131013297 + (CG)n Simple_repeat Simple_repeat 1 32 0 1 772 378 61 0 0 chr4 24616823 24616872 -131013248 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 772 233 311 0 0 chr4 24616970 24617031 -131013089 + CT-rich Low_complexity Low_complexity 3 63 0 1 772 500 230 63 28 chr4 24617034 24617177 -131012943 - B1F SINE Alu 0 149 2 1 772 26 0 0 0 chr4 24617661 24617687 -131012433 + AT_rich Low_complexity Low_complexity 1 26 0 1 772 630 329 25 45 chr4 24619210 24619455 -131010665 - Tigger5 DNA MER2_type -2129 277 38 1 772 1192 36 0 0 chr4 24619907 24620044 -131010076 + B1_Mm SINE Alu 1 137 -10 1 772 396 0 0 0 chr4 24620044 24620088 -131010032 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 772 238 322 14 0 chr4 24621562 24621705 -131008415 + (TA)n Simple_repeat Simple_repeat 2 146 0 1 772 1349 87 11 5 chr4 24622157 24622343 -131007777 + B2_Mm2 SINE B2 1 187 -8 1 772 181 292 33 22 chr4 24623951 24624042 -131006078 + L3 LINE CR1 722 813 -3676 1 772 8372 183 46 45 chr4 24627075 24629091 -131001029 + L1_Mur3 LINE L1 21 2050 -3830 1 772 426 20 0 0 chr4 24629091 24629142 -131000978 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 772 8372 167 46 63 chr4 24629142 24629207 -131000913 + L1_Mur3 LINE L1 2051 2073 -3807 1 772 306 0 0 0 chr4 24629207 24629241 -131000879 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 772 240 35 0 0 chr4 24629241 24629269 -131000851 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 772 207 0 0 0 chr4 24629270 24629293 -131000827 + (CCA)n Simple_repeat Simple_repeat 2 24 0 1 772 8372 167 46 63 chr4 24629293 24630524 -130999596 + L1_Mur3 LINE L1 2074 3315 -2565 1 772 5890 164 36 39 chr4 24630523 24631824 -130998296 + L1_Mur3 LINE L1 3966 5262 -618 1 772 785 251 63 9 chr4 24631814 24632035 -130998085 + Lx6 LINE L1 7048 7280 -180 1 772 294 260 60 0 chr4 24632105 24632205 -130997915 + Lx7 LINE L1 7189 7294 -402 1 772 243 0 0 0 chr4 24632234 24632261 -130997859 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 772 200 184 10 94 chr4 24632322 24632418 -130997702 + T-rich Low_complexity Low_complexity 1 88 0 1 772 333 0 0 0 chr4 24633132 24633169 -130996951 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1 772 303 146 0 0 chr4 24633374 24633429 -130996691 + (CAA)n Simple_repeat Simple_repeat 2 56 0 1 772 212 59 0 29 chr4 24634419 24634454 -130995666 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 772 519 138 0 0 chr4 24634768 24634855 -130995265 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 772 564 15 0 0 chr4 24634870 24634935 -130995185 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 772 545 177 8 58 chr4 24635285 24635405 -130994715 + B1_Mm SINE Alu 34 147 0 1 772 480 18 0 0 chr4 24635939 24635996 -130994124 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 772 343 297 153 40 chr4 24638178 24638406 -130991714 + L2a LINE L2 3147 3400 -26 1 772 207 88 0 0 chr4 24639335 24639369 -130990751 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 773 629 216 199 0 chr4 24642685 24642861 -130987259 - B3 SINE B2 -5 211 1 1 773 1475 302 47 13 chr4 24643869 24644483 -130985637 - L1MC1 LINE L1 -20 6313 5679 1 773 267 316 79 0 chr4 24644566 24644680 -130985440 - L1MC1 LINE L1 -22 6311 6189 1 773 372 156 0 0 chr4 24644702 24644792 -130985328 + GA-rich Low_complexity Low_complexity 2 91 0 1 773 489 284 99 24 chr4 24644795 24645240 -130984880 - L1MC1 LINE L1 -730 5603 5132 1 773 480 48 0 0 chr4 24645384 24645447 -130984673 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 773 792 272 160 6 chr4 24645571 24646045 -130984075 - L1MC1 LINE L1 -1203 4943 4397 1 773 356 246 64 0 chr4 24646056 24646166 -130983954 + MER58B DNA MER1_type 70 186 -155 1 773 310 280 89 10 chr4 24646184 24646285 -130983835 + MER58B DNA MER1_type 227 335 -6 1 773 522 184 234 18 chr4 24646638 24646749 -130983371 + B1_Mm SINE Alu 5 139 -8 1 773 399 259 0 0 chr4 24647943 24648024 -130982096 + ID4 SINE ID 2 82 -1 2 773 266 271 9 119 chr4 24648398 24648507 -130981613 - B1F1 SINE Alu -52 97 1 2 773 302 263 13 13 chr4 24648431 24648508 -130981612 - ID_B1 SINE B4 -67 157 81 2 773 496 315 83 76 chr4 24648698 24648987 -130981133 + B4A SINE B4 2 292 0 2 773 343 359 107 49 chr4 24649331 24649853 -130980267 + MER20B DNA MER1_type 120 688 -95 2 773 4499 160 10 12 chr4 24649853 24650631 -130979489 + Lx4B LINE L1 6275 7051 -7 2 773 343 359 107 49 chr4 24650631 24650676 -130979444 + MER20B DNA MER1_type 689 720 -63 2 773 180 0 0 0 chr4 24650823 24650843 -130979277 + (T)n Simple_repeat Simple_repeat 1 20 0 2 773 331 309 154 28 chr4 24651681 24651824 -130978296 + LTR52 LTR ERVL 24 184 -237 2 773 22105 85 10 9 chr4 24652012 24653353 -130976767 - L1Md_F2 LINE L1 0 6582 5251 2 773 576 0 0 0 chr4 24653353 24653417 -130976703 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 773 22105 71 15 2 chr4 24653417 24655897 -130974223 - L1Md_F2 LINE L1 -633 5250 2729 2 773 2978 249 66 19 chr4 24655948 24657213 -130972907 - Lx7 LINE L1 -1607 6089 4750 2 773 467 295 87 33 chr4 24657239 24657264 -130972856 + Lx8 LINE L1 6147 6171 -1302 2 773 495 0 0 0 chr4 24657264 24657319 -130972801 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 773 467 295 87 33 chr4 24657319 24657535 -130972585 + Lx8 LINE L1 6172 6400 -1073 2 773 252 0 0 0 chr4 24657551 24657579 -130972541 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 773 366 23 0 0 chr4 24657664 24657707 -130972413 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 773 237 241 0 18 chr4 24657707 24657762 -130972358 + Lx8 LINE L1 6447 6500 -973 2 773 309 51 0 0 chr4 24657763 24657802 -130972318 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 773 189 107 0 0 chr4 24657802 24657830 -130972290 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 773 1593 303 80 39 chr4 24657832 24658660 -130971460 + Lx7 LINE L1 6439 7300 -396 2 773 554 119 29 59 chr4 24658674 24658844 -130971276 + CT-rich Low_complexity Low_complexity 1 165 0 2 773 609 191 0 39 chr4 24658850 24659003 -130971117 + C-rich Low_complexity Low_complexity 2 148 0 2 773 379 106 20 60 chr4 24659007 24659107 -130971013 + CT-rich Low_complexity Low_complexity 3 98 0 2 773 2543 62 0 6 chr4 24659107 24659445 -130970675 - L1Md_F2 LINE L1 -2 6580 6245 2 773 2369 30 0 0 chr4 24659445 24659741 -130970379 + L1_Mm LINE L1 4355 4650 -1233 2 773 4653 40 2 0 chr4 24659736 24660318 -130969802 - L1Md_F2 LINE L1 -339 6243 5661 2 773 38 85 0 0 chr4 24660387 24660481 -130969639 + AT_rich Low_complexity Low_complexity 1 94 0 2 773 2505 140 116 83 chr4 24660541 24661093 -130969027 + RMER4B LTR ERVK 14 583 -2 2 773 3998 86 0 35 chr4 24661809 24662388 -130967732 - L1Md_F2 LINE L1 -12 6570 6012 2 773 474 18 0 0 chr4 24662913 24662968 -130967152 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 773 204 67 0 0 chr4 24663930 24663960 -130966160 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 773 877 201 0 0 chr4 24664840 24664984 -130965136 - B1_Mur1 SINE Alu -5 144 1 2 773 435 220 60 0 chr4 24665338 24665438 -130964682 - B1_Mur4 SINE Alu -1 149 44 2 773 1716 189 84 12 chr4 24665775 24666118 -130964002 - MTD LTR MaLR -9 410 43 2 773 1511 237 145 50 chr4 24666139 24666698 -130963422 - MTC-int LTR MaLR 0 1258 647 2 773 649 209 0 0 chr4 24667709 24667819 -130962301 - B3 SINE B2 -105 111 2 2 773 1614 170 18 200 chr4 24668008 24668523 -130961597 + MTC LTR MaLR 1 421 0 2 773 4033 199 153 37 chr4 24668523 24669650 -130960470 + MTC-int LTR MaLR 1 1258 0 2 773 3497 54 27 0 chr4 24669731 24670178 -130959942 + L1Md_F3 LINE L1 6125 6583 -1 2 773 258 132 0 0 chr4 24670190 24670243 -130959877 + (A)n Simple_repeat Simple_repeat 1 53 0 2 773 1790 190 59 18 chr4 24670243 24670581 -130959539 + MTC LTR MaLR 68 419 -2 2 773 21 0 0 0 chr4 24670881 24670902 -130959218 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 258 286 210 99 chr4 24671495 24671728 -130958392 + Tigger7 DNA MER2_type 26 284 -2207 2 773 838 298 85 6 chr4 24671731 24672059 -130958061 + Tigger7 DNA MER2_type 2137 2490 -1 2 773 245 259 112 53 chr4 24672063 24672239 -130957881 + L1MB1 LINE L1 5645 5829 -483 2 773 1088 72 0 0 chr4 24672280 24672418 -130957702 + B1_Mus2 SINE Alu 2 139 -8 2 773 311 0 0 25 chr4 24672418 24672458 -130957662 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 773 308 267 67 25 chr4 24672466 24672585 -130957535 + L1MB1 LINE L1 5975 6098 -70 2 773 248 325 0 0 chr4 24672632 24672712 -130957408 + GA-rich Low_complexity Low_complexity 1 80 0 2 773 228 276 108 23 chr4 24672719 24672849 -130957271 + L1MA9 LINE L1 6169 6309 -3 2 773 185 274 67 56 chr4 24672937 24673026 -130957094 + MIRb SINE MIR 99 188 -80 2 773 6594 181 86 62 chr4 24673057 24676106 -130954014 + Lx6 LINE L1 89 3226 -2654 2 773 7200 215 52 13 chr4 24676093 24678765 -130951355 + Lx6 LINE L1 4641 7441 -19 2 773 791 93 0 8 chr4 24678770 24678889 -130951231 + (GAAAA)n Simple_repeat Simple_repeat 2 119 0 2 773 458 206 33 51 chr4 24678892 24679004 -130951116 + B3A SINE B2 29 142 -56 2 773 426 79 0 0 chr4 24679004 24679067 -130951053 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 773 192 77 0 0 chr4 24679067 24679093 -130951027 + (TAA)n Simple_repeat Simple_repeat 1 26 0 2 773 980 167 139 9 chr4 24679344 24679574 -130950546 - MTC LTR MaLR -8 413 154 2 773 419 205 186 90 chr4 24681077 24681254 -130948866 + Lx9 LINE L1 7005 7198 -446 2 773 655 165 37 0 chr4 24681433 24681542 -130948578 - B1_Mur4 SINE Alu -37 113 1 2 773 238 250 68 27 chr4 24682217 24682291 -130947829 - PB1D7 SINE Alu -2 118 42 2 773 698 236 106 11 chr4 24682332 24682520 -130947600 + B3 SINE B2 5 210 -6 2 773 463 376 0 6 chr4 24682567 24682725 -130947395 + MER5A1 DNA MER1_type 3 159 -7 2 773 231 338 0 53 chr4 24683720 24683795 -130946325 + ID4 SINE ID 2 72 -11 2 773 528 16 0 0 chr4 24683795 24683856 -130946264 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 773 1163 201 252 93 chr4 24683944 24684363 -130945757 + MT2A LTR ERVL 1 496 -37 2 773 486 0 0 0 chr4 24684363 24684417 -130945703 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 773 447 19 0 0 chr4 24684417 24684468 -130945652 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 773 1163 201 252 93 chr4 24684468 24684507 -130945613 + MT2A LTR ERVL 497 532 -1 2 773 2112 175 58 39 chr4 24684511 24684998 -130945122 + MERVL_2A-int LTR ERVL 5 500 -5261 2 773 4841 162 20 13 chr4 24685039 24685940 -130944180 + MERVL_2A-int LTR ERVL 680 1586 -4175 2 773 350 191 128 0 chr4 24685941 24686035 -130944085 + RLTR15 LTR ERVK 136 241 -118 2 773 336 158 0 0 chr4 24686038 24686095 -130944025 - URR1B DNA MER1_type 0 225 169 2 773 3465 165 43 19 chr4 24686102 24686745 -130943375 + MERVL_2A-int LTR ERVL 3005 3663 -2098 2 773 7006 166 65 5 chr4 24686776 24688059 -130942061 + MERVL_2A-int LTR ERVL 4331 5690 -71 2 773 582 164 36 29 chr4 24688059 24688197 -130941923 + MERVL_2A-int LTR ERVL 5621 5759 -2 2 773 1110 199 228 110 chr4 24688199 24688599 -130941521 + MT2A LTR ERVL 1 447 -86 2 773 1584 94 51 132 chr4 24688652 24689008 -130941112 - L1_Mur3 LINE L1 -348 5532 5206 2 773 4070 149 271 26 chr4 24689008 24689863 -130940257 + L1_Mur3 LINE L1 3897 5000 -880 2 773 1936 184 35 50 chr4 24689863 24690286 -130939834 - MTC LTR MaLR 0 421 5 2 773 4070 149 271 26 chr4 24690286 24690476 -130939644 + L1_Mur3 LINE L1 5001 5199 -681 2 773 23 0 0 0 chr4 24690477 24690500 -130939620 + AT_rich Low_complexity Low_complexity 1 23 0 2 773 794 258 61 132 chr4 24690663 24691124 -130938996 + RLTR23 LTR ERV1 3 430 0 2 773 328 271 10 40 chr4 24691320 24691420 -130938700 - MIRc SINE MIR -119 149 53 2 773 349 346 176 34 chr4 24693196 24693752 -130936368 - L2 LINE L2 -421 2998 2364 2 773 240 300 17 0 chr4 24693754 24693814 -130936306 - MT2A LTR ERVL -155 378 318 2 773 304 266 76 61 chr4 24693826 24693958 -130936162 + MLT2B1 LTR ERVL 408 541 -26 2 773 253 294 225 25 chr4 24694022 24694266 -130935854 - L2 LINE L2 -1108 2311 2019 2 773 1473 156 97 48 chr4 24695501 24695832 -130934288 + RMER10A LTR ERVL 65 411 -31 2 773 503 0 0 31 chr4 24695832 24695896 -130934224 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 2 773 4288 212 73 48 chr4 24695957 24696137 -130933983 - Lx6 LINE L1 -169 7291 7126 2 773 312 27 0 0 chr4 24696137 24696174 -130933946 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 773 768 99 0 0 chr4 24696174 24696284 -130933836 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 773 4288 212 73 48 chr4 24696284 24697229 -130932891 - Lx6 LINE L1 -335 7125 6138 2 773 3670 160 27 35 chr4 24697320 24698063 -130932057 - RMER17A LTR ERVK -14 737 1 2 773 3102 108 49 6 chr4 24698212 24698704 -130931416 + Lx LINE L1 6135 6647 -7 2 773 274 346 77 0 chr4 24698752 24698856 -130931264 + RMER4A LTR ERVK 8 119 -347 2 773 2566 152 19 39 chr4 24699099 24699614 -130930506 + L1_Mur3 LINE L1 4789 5293 -587 2 773 25140 29 0 0 chr4 24699618 24702776 -130927344 + L1Md_T LINE L1 2428 5586 -297 2 773 8450 35 0 0 chr4 24702776 24703772 -130926348 + L1Md_T LINE L1 5587 6582 0 2 773 1036 152 15 20 chr4 24703772 24703974 -130926146 + L1_Mur3 LINE L1 5286 5486 -394 2 773 421 271 37 0 chr4 24703978 24704085 -130926035 - MLT1D LTR MaLR -100 405 295 2 773 465 275 23 34 chr4 24704058 24704284 -130925836 + ORR1D1 LTR MaLR 100 416 -5 2 773 407 208 65 9 chr4 24704740 24704847 -130925273 + B3A SINE B2 83 195 -3 2 773 969 243 226 3 chr4 24705107 24705413 -130924707 + MTD LTR MaLR 1 374 -45 2 773 474 345 111 91 chr4 24705483 24705623 -130924497 + MLT2B1 LTR ERVL 62 204 -316 2 773 3355 92 45 0 chr4 24705623 24706110 -130924010 + Lx3A LINE L1 6466 6974 -7 2 773 474 345 111 91 chr4 24706110 24706418 -130923702 + MLT2B1 LTR ERVL 205 519 -1 2 773 43 20 0 0 chr4 24706583 24706633 -130923487 + AT_rich Low_complexity Low_complexity 1 50 0 2 773 297 299 102 12 chr4 24706861 24707027 -130923093 - L1MC2 LINE L1 -449 5895 5715 2 773 15527 73 1 1 chr4 24708258 24710430 -130919690 + L1_Mm LINE L1 3034 5205 -678 2 773 5250 111 3 7 chr4 24710430 24711198 -130918922 + L1Md_F2 LINE L1 5805 6569 -13 2 773 611 156 7 21 chr4 24711214 24711358 -130918762 + (TA)n Simple_repeat Simple_repeat 1 142 0 2 773 191 310 11 54 chr4 24711444 24711536 -130918584 - L2a LINE L2 -23 3403 3316 2 773 241 342 40 40 chr4 24711868 24711993 -130918127 + MIR SINE MIR 116 240 -22 2 773 215 333 0 0 chr4 24712098 24712158 -130917962 + L2c LINE L2 3236 3295 -92 2 773 297 0 0 0 chr4 24712633 24712666 -130917454 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 773 207 294 43 11 chr4 24713459 24713552 -130916568 - MIR SINE MIR -64 144 49 2 773 1454 187 106 98 chr4 24714481 24714867 -130915253 - MTD LTR MaLR -30 389 1 2 773 365 316 45 32 chr4 24714867 24715010 -130915110 + LTR40a LTR ERVL 60 204 -315 2 773 549 261 42 14 chr4 24715023 24715167 -130914953 - B4A SINE B4 -142 150 3 2 773 437 246 45 0 chr4 24715453 24715587 -130914533 - Lx9 LINE L1 -153 7491 7352 3 773 226 317 17 0 chr4 24715666 24715726 -130914394 + MLT1H2 LTR MaLR 70 130 -359 3 773 1924 132 32 146 chr4 24715764 24716197 -130913923 + ORR1C2 LTR MaLR 1 384 0 3 773 613 201 147 35 chr4 24716257 24716427 -130913693 + B3 SINE B2 28 216 0 3 773 447 271 70 29 chr4 24716754 24716997 -130913123 + L1M2 LINE L1 2937 3189 -2954 3 773 402 289 70 22 chr4 24717001 24717155 -130912965 + B3A SINE B2 2 159 -34 3 773 246 62 0 0 chr4 24717155 24717187 -130912933 + (CATA)n Simple_repeat Simple_repeat 4 35 0 3 773 210 325 81 52 chr4 24717187 24717204 -130912916 + B2_Mm1a SINE B2 160 178 -15 3 773 399 263 55 5 chr4 24717209 24717408 -130912712 + L1M2 LINE L1 3179 3387 -2756 3 773 36 70 0 0 chr4 24717414 24717485 -130912635 + AT_rich Low_complexity Low_complexity 1 71 0 3 773 722 176 194 0 chr4 24717535 24717705 -130912415 - ORR1B2 LTR MaLR -164 203 1 3 773 353 204 152 10 chr4 24717705 24717804 -130912316 + MTD LTR MaLR 304 416 -3 3 773 396 0 0 0 chr4 24717908 24717952 -130912168 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 3 773 301 259 112 0 chr4 24718001 24718135 -130911985 + L1M2 LINE L1 4450 4628 -1515 3 773 746 279 96 19 chr4 24718296 24718595 -130911525 - MTE2b LTR MaLR -10 369 19 3 773 205 171 0 0 chr4 24718739 24718774 -130911346 + GA-rich Low_complexity Low_complexity 1 35 0 3 773 474 309 38 50 chr4 24718779 24718939 -130911181 + RSINE1 SINE B4 2 159 -6 3 773 203 222 22 0 chr4 24718940 24718985 -130911135 + (CATA)n Simple_repeat Simple_repeat 1 46 0 3 773 423 269 107 16 chr4 24720399 24720520 -130909600 + ID_B1 SINE B4 81 212 -12 3 773 210 333 40 30 chr4 24721609 24721708 -130908412 - MIR SINE MIR -35 227 128 3 773 983 141 33 22 chr4 24722138 24722320 -130907800 + B2_Mm2 SINE B2 4 187 -8 3 773 391 292 136 25 chr4 24723208 24723450 -130906670 + MER33 DNA MER1_type 1 269 -55 3 773 32 0 0 0 chr4 24724126 24724158 -130905962 + AT_rich Low_complexity Low_complexity 1 32 0 3 773 265 343 0 53 chr4 24724975 24725089 -130905031 - L2 LINE L2 -940 2479 2372 3 773 2486 225 31 28 chr4 24725455 24726026 -130904094 + Lx7 LINE L1 6754 7326 -370 3 773 229 300 0 126 chr4 24726550 24726653 -130903467 - MER20 DNA MER1_type -1 218 129 3 773 207 152 0 0 chr4 24727436 24727482 -130902638 + A-rich Low_complexity Low_complexity 1 46 0 3 773 280 210 143 36 chr4 24729724 24729808 -130900312 + MER34A LTR ERV1 1 93 -478 3 773 313 212 73 29 chr4 24730173 24730241 -130899879 - MER2B DNA MER2_type -264 72 2 3 773 297 180 0 20 chr4 24730401 24730452 -130899668 + MTC LTR MaLR 4 53 -368 3 773 1676 224 20 11 chr4 24730456 24730808 -130899312 + RMER1C Other Other 828 1182 -160 3 773 1142 42 14 0 chr4 24730844 24730986 -130899134 - L1_Mus1 LINE L1 -239 6328 6185 3 773 1625 48 0 0 chr4 24730986 24731175 -130898945 + L1_Mus1 LINE L1 6379 6567 0 3 773 1502 255 123 164 chr4 24732241 24733589 -130896531 + RMER12 LTR ERVK 1 1293 -29 3 773 1575 224 72 28 chr4 24733896 24734258 -130895862 - ORR1C1 LTR MaLR 0 378 1 3 773 23 0 0 0 chr4 24734566 24734589 -130895531 + AT_rich Low_complexity Low_complexity 1 23 0 3 773 390 221 0 0 chr4 24734591 24734659 -130895461 + PB1D9 SINE Alu 3 70 -50 3 773 1093 110 0 104 chr4 24734966 24735159 -130894961 + ORR1A3 LTR MaLR 1 173 -153 3 773 242 214 97 28 chr4 24735635 24735707 -130894413 - MTB_Mm LTR MaLR -138 269 193 3 773 627 252 13 13 chr4 24735807 24735960 -130894160 + MTD LTR MaLR 1 153 -266 3 773 630 26 0 0 chr4 24735960 24736036 -130894084 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 773 406 308 128 0 chr4 24736042 24736159 -130893961 - B1_Mur1 SINE Alu -6 143 12 3 773 828 0 0 0 chr4 24736165 24736257 -130893863 + (GAA)n Simple_repeat Simple_repeat 2 93 0 3 773 269 263 115 17 chr4 24736664 24736808 -130893312 - MLT1C LTR MaLR -219 171 7 3 773 413 306 85 80 chr4 24737058 24737172 -130892948 + MLT1B LTR MaLR 3 118 -272 3 773 1377 212 195 129 chr4 24737172 24737669 -130892451 + MT2A LTR ERVL 4 533 0 3 773 413 327 21 89 chr4 24737669 24737690 -130892430 + MLT1B LTR MaLR 119 133 -257 3 773 1190 247 20 172 chr4 24737690 24738184 -130891936 + MTD LTR MaLR 1 419 0 3 773 413 327 21 89 chr4 24738184 24738313 -130891807 + MLT1B LTR MaLR 134 258 -132 3 773 1629 206 96 17 chr4 24738372 24738728 -130891392 + ORR1C2 LTR MaLR 1 384 0 3 773 582 129 10 29 chr4 24738728 24738832 -130891288 + ORR1C2-int LTR MaLR 1 102 -1268 3 773 1581 173 50 83 chr4 24738842 24739018 -130891102 + ORR1C2 LTR MaLR 8 173 -211 3 773 507 33 0 0 chr4 24739018 24739079 -130891041 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 773 1581 173 50 83 chr4 24739079 24739286 -130890834 + ORR1C2 LTR MaLR 174 378 -6 3 773 28 29 0 0 chr4 24740235 24740270 -130889850 + AT_rich Low_complexity Low_complexity 1 35 0 3 773 684 112 132 15 chr4 24740567 24740703 -130889417 - L1_Mus2 LINE L1 0 6566 6415 3 773 742 291 132 10 chr4 24742378 24742666 -130887454 + MER21B LTR ERV1 277 599 -264 3 773 939 291 51 0 chr4 24742955 24743157 -130886963 - B4 SINE B4 -1 291 86 3 773 306 0 0 0 chr4 24743157 24743191 -130886929 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 773 939 291 51 0 chr4 24743191 24743225 -130886895 - B4 SINE B4 -207 85 44 3 773 570 326 47 43 chr4 24743342 24743576 -130886544 + MER21B LTR ERV1 610 844 -19 3 773 610 283 0 36 chr4 24743701 24743866 -130886254 + Lx8 LINE L1 7135 7293 -180 3 773 379 139 83 0 chr4 24743923 24743995 -130886125 - Lx9 LINE L1 -557 7087 7010 3 773 911 229 0 0 chr4 24743984 24744163 -130885957 - Lx9 LINE L1 -752 6892 6714 3 773 1578 236 26 8 chr4 24744158 24744509 -130885611 + Lx9 LINE L1 7104 7460 -184 3 773 438 108 0 0 chr4 24744509 24744574 -130885546 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 773 335 215 36 58 chr4 24744853 24744991 -130885129 + Lx9 LINE L1 7493 7627 -17 3 773 297 197 0 0 chr4 24744991 24745052 -130885068 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 773 665 269 38 11 chr4 24745062 24745246 -130884874 + MLT1A LTR MaLR 186 374 0 3 773 333 0 0 0 chr4 24745743 24745780 -130884340 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 773 244 276 56 33 chr4 24745959 24746049 -130884071 + HAL1 LINE L1 1638 1729 -778 3 773 24009 120 32 25 chr4 24746335 24748036 -130882084 + L1Md_F2 LINE L1 259 1969 -3914 3 773 342 0 0 0 chr4 24748036 24748074 -130882046 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 773 24009 78 6 1 chr4 24748074 24750571 -130879549 + L1Md_F2 LINE L1 1970 4479 -1404 3 773 3920 65 18 0 chr4 24750568 24751075 -130879045 + L1Md_F2 LINE L1 5070 5585 -298 3 773 8183 67 2 3 chr4 24751076 24752071 -130878049 + L1Md_F2 LINE L1 5587 6580 -2 3 773 24 77 0 0 chr4 24752982 24753034 -130877086 + AT_rich Low_complexity Low_complexity 1 52 0 3 773 887 240 50 48 chr4 24753074 24753491 -130876629 - Lx7 LINE L1 -1 7695 7142 3 773 1147 297 49 22 chr4 24753825 24754190 -130875930 - MTE2b LTR MaLR -4 375 1 3 773 356 267 124 0 chr4 24754196 24754301 -130875819 + MER58B DNA MER1_type 224 341 0 3 773 222 37 0 0 chr4 24754544 24754571 -130875549 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 3 773 198 0 0 0 chr4 24755146 24755168 -130874952 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 773 28 48 0 0 chr4 24755264 24755306 -130874814 + AT_rich Low_complexity Low_complexity 1 42 0 3 773 1374 185 128 68 chr4 24755511 24755864 -130874256 + ORR1D1 LTR MaLR 1 374 0 3 773 225 0 0 0 chr4 24757309 24757334 -130872786 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 3 773 377 66 16 0 chr4 24758035 24758096 -130872024 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 3 773 228 35 0 0 chr4 24758107 24758136 -130871984 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 3 773 543 37 37 0 chr4 24759041 24759123 -130870997 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 773 306 292 115 62 chr4 24759202 24759428 -130870692 + RLTR25A LTR ERVK 866 1103 0 3 773 1378 203 109 89 chr4 24760503 24760897 -130869223 + RLTR20C LTR ERVK 1 402 -132 3 773 263 132 38 0 chr4 24761563 24761616 -130868504 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 3 773 232 184 0 0 chr4 24762117 24762155 -130867965 + ORR1A3 LTR MaLR 77 114 -212 3 773 186 233 48 32 chr4 24763852 24763914 -130866206 - L2c LINE L2 -246 3141 3079 3 773 210 333 67 0 chr4 24764049 24764139 -130865981 - L2c LINE L2 -573 2846 2751 3 773 1699 177 33 101 chr4 24764264 24764907 -130865213 - RLTR31_Mm LTR ERVK -6 555 1 3 773 735 236 7 20 chr4 24765141 24765292 -130864828 + B1_Mur1 SINE Alu 1 149 0 3 773 248 0 31 0 chr4 24766244 24766276 -130863844 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 773 216 158 0 0 chr4 24766421 24766459 -130863661 + A-rich Low_complexity Low_complexity 1 38 0 3 773 180 0 0 0 chr4 24767116 24767136 -130862984 + (TGG)n Simple_repeat Simple_repeat 3 22 0 3 773 863 287 57 60 chr4 24767209 24767579 -130862541 + Lx8 LINE L1 7105 7473 0 3 773 24 32 0 0 chr4 24767888 24767919 -130862201 + AT_rich Low_complexity Low_complexity 1 31 0 3 773 183 114 0 0 chr4 24768053 24768088 -130862032 + (A)n Simple_repeat Simple_repeat 1 35 0 3 773 758 11 11 0 chr4 24768633 24768724 -130861396 + (GAGAA)n Simple_repeat Simple_repeat 4 95 0 3 773 862 201 0 14 chr4 24769188 24769334 -130860786 + B1_Mur1 SINE Alu 4 147 -2 3 773 1020 214 71 0 chr4 24769408 24769604 -130860516 - B3 SINE B2 -6 210 1 3 773 759 284 62 5 chr4 24769609 24769818 -130860302 - ID_B1 SINE B4 -2 222 2 3 773 265 270 0 0 chr4 24771091 24771154 -130858966 + MLT1A LTR MaLR 75 137 -237 3 773 8096 40 17 2 chr4 24771313 24772239 -130857881 + L1Md_F2 LINE L1 5642 6581 -1 3 773 192 300 148 14 chr4 24772305 24772447 -130857673 - MIRc SINE MIR -89 179 19 3 774 345 277 152 58 chr4 24773732 24773989 -130856131 + B4A SINE B4 2 282 -10 3 774 215 309 73 0 chr4 24774917 24774985 -130855135 - ID SINE ID -149 75 3 3 774 548 325 81 35 chr4 24775447 24775731 -130854389 - MER2 DNA MER2_type -23 322 26 3 774 288 250 43 64 chr4 24775866 24775960 -130854160 - B1_Mus2 SINE Alu 0 147 56 3 774 386 238 57 9 chr4 24775958 24776064 -130854056 + B1_Mm SINE Alu 13 123 -24 3 774 22 56 0 0 chr4 24776235 24776271 -130853849 + AT_rich Low_complexity Low_complexity 1 36 0 3 774 180 0 0 0 chr4 24776639 24776659 -130853461 + (CCCCCT)n Simple_repeat Simple_repeat 2 21 0 3 774 2196 261 83 17 chr4 24779380 24780030 -130850090 - Lx9 LINE L1 -478 7166 6474 3 774 1022 264 36 42 chr4 24780049 24780430 -130849690 - BGLII_B LTR ERVK -27 414 26 3 774 474 261 36 0 chr4 24780439 24780550 -130849570 - Lx9 LINE L1 -1173 6471 6357 3 774 838 234 129 7 chr4 24780573 24780853 -130849267 + Lx9 LINE L1 7309 7622 -22 4 774 3448 158 114 12 chr4 24781118 24781777 -130848343 + Lx4B LINE L1 6333 7058 0 4 774 398 20 20 0 chr4 24781780 24781831 -130848289 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 4 774 1620 226 75 47 chr4 24781831 24782258 -130847862 - RMER1C Other Other -214 1128 690 4 774 456 246 77 26 chr4 24782496 24782613 -130847507 + MTEb LTR MaLR 1 123 -236 4 774 684 292 4 17 chr4 24782838 24783023 -130847097 - B3A SINE B2 -34 182 1 4 774 729 257 186 9 chr4 24784749 24784969 -130845151 + MTEb LTR MaLR 113 371 -8 4 774 4014 267 55 139 chr4 24784973 24785729 -130844391 + MTEb-int LTR MaLR 1 603 -977 4 774 900 94 0 0 chr4 24785729 24785857 -130844263 + (GA)n Simple_repeat Simple_repeat 2 129 0 4 774 4014 267 55 139 chr4 24785857 24786648 -130843472 + MTEb-int LTR MaLR 604 1417 -163 4 774 505 205 0 0 chr4 24786744 24786827 -130843293 + B4A SINE B4 3 85 -207 4 774 761 243 134 8 chr4 24786834 24787069 -130843051 - MT2A LTR ERVL 0 475 111 4 774 425 199 40 25 chr4 24787121 24787242 -130842878 - MT2A LTR ERVL -416 117 1 4 774 658 279 174 0 chr4 24787245 24787417 -130842703 + B4A SINE B4 91 292 0 4 774 197 139 23 0 chr4 24787456 24787499 -130842621 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 774 1380 237 105 3 chr4 24787558 24787901 -130842219 + MTEb LTR MaLR 2 379 0 4 774 21 36 0 0 chr4 24787905 24787933 -130842187 + AT_rich Low_complexity Low_complexity 1 28 0 4 774 246 95 0 0 chr4 24788400 24788442 -130841678 + (A)n Simple_repeat Simple_repeat 1 42 0 4 774 412 311 133 24 chr4 24789229 24789440 -130840680 - MER47B DNA MER2_type -174 244 11 4 774 232 316 88 88 chr4 24790046 24790261 -130839859 - MER34A LTR ERV1 -61 510 296 4 774 438 20 0 0 chr4 24791412 24791463 -130838657 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 774 420 297 83 6 chr4 24791666 24791822 -130838298 - MLT1D LTR MaLR 0 505 338 4 774 1950 205 53 39 chr4 24792132 24792543 -130837577 + MTC LTR MaLR 5 421 0 4 774 288 263 142 71 chr4 24792871 24792998 -130837122 + MER63B DNA AcHobo 298 433 -3 4 774 1790 159 56 98 chr4 24793126 24793536 -130836584 + RLTR9C LTR ERVK 1 393 0 4 774 1534 204 18 29 chr4 24793608 24793960 -130836160 + ORR1B2 LTR MaLR 16 367 0 4 774 262 182 17 68 chr4 24794042 24794101 -130836019 + BC1_Mm scRNA scRNA 2 57 -95 4 774 1699 157 69 99 chr4 24794345 24794555 -130835565 + RMER17C LTR ERVK 1 217 -193 4 774 468 48 58 23 chr4 24794555 24794641 -130835479 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 4 774 1699 157 69 99 chr4 24794641 24794853 -130835267 + RMER17C LTR ERVK 218 410 0 4 774 1444 206 61 10 chr4 24795112 24795486 -130834634 - MTD LTR MaLR 0 419 5 4 774 998 250 173 106 chr4 24795630 24796185 -130833935 - RLTR18 LTR ERVK 0 616 25 4 774 2783 152 26 60 chr4 24796985 24797483 -130832637 + RLTR28B LTR ERVL 1 481 0 4 774 636 118 164 8 chr4 24798216 24798344 -130831776 - B2_Mm2 SINE B2 -1 194 47 4 774 1281 102 17 0 chr4 24798374 24798550 -130831570 - B2_Mm1t SINE B2 -14 179 1 4 774 1075 157 0 6 chr4 24798947 24799114 -130831006 - Lx6 LINE L1 -11 7449 7284 4 774 409 305 23 46 chr4 24800030 24800205 -130829915 + MLT1C LTR MaLR 80 250 -217 4 774 727 209 146 63 chr4 24800222 24800524 -130829596 - RMER17C LTR ERVK -81 329 3 4 774 5824 55 17 1 chr4 24800688 24801381 -130828739 - L1_Mus2 LINE L1 0 6566 5863 4 774 215 213 0 0 chr4 24801571 24801618 -130828502 + (GCATG)n Simple_repeat Simple_repeat 1 47 0 4 774 631 239 51 13 chr4 24801665 24801822 -130828298 + MLT1C LTR MaLR 305 467 0 4 774 2005 146 87 96 chr4 24802640 24802938 -130827182 + RMER1C Other Other 899 1216 -126 4 774 1069 67 0 53 chr4 24802938 24803128 -130826992 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 774 2005 146 87 96 chr4 24803128 24803276 -130826844 + RMER1C Other Other 1217 1341 -1 4 774 192 250 0 0 chr4 24803393 24803473 -130826647 + GA-rich Low_complexity Low_complexity 2 81 0 4 774 230 268 165 0 chr4 24803500 24803627 -130826493 + RMER17B LTR ERVK 241 388 -570 4 774 637 275 152 20 chr4 24804641 24804938 -130825182 + RLTR15 LTR ERVK 1 336 -23 4 774 781 178 110 6 chr4 24805093 24805257 -130824863 - MTD LTR MaLR -5 414 234 4 774 544 122 33 0 chr4 24805256 24805346 -130824774 - MTD LTR MaLR -326 93 1 4 774 713 339 51 34 chr4 24806443 24806739 -130823381 + Tigger7 DNA MER2_type 4 304 -2187 4 774 513 88 0 0 chr4 24806866 24806946 -130823174 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 774 1693 160 189 9 chr4 24807952 24808286 -130821834 - ORR1B1 LTR MaLR 0 394 1 4 774 594 301 125 22 chr4 24808296 24808615 -130821505 + Lx8 LINE L1 6645 6996 -477 4 774 43 35 0 0 chr4 24808628 24808685 -130821435 + AT_rich Low_complexity Low_complexity 1 57 0 4 774 1921 147 0 48 chr4 24808740 24809077 -130821043 - ORR1A4 LTR MaLR -8 321 1 4 774 204 343 189 17 chr4 24809092 24809267 -130820853 - MIRb SINE MIR -18 250 46 4 774 430 295 59 114 chr4 24810018 24810029 -130820091 + B4 SINE B4 2 10 -282 4 774 2525 107 0 0 chr4 24810029 24810355 -130819765 - ORR1A3 LTR MaLR 0 326 1 4 774 430 295 59 114 chr4 24810355 24810649 -130819471 + B4 SINE B4 11 290 -2 4 774 852 121 0 0 chr4 24810654 24810795 -130819325 + (CAGA)n Simple_repeat Simple_repeat 4 144 0 4 774 319 330 0 44 chr4 24810813 24810927 -130819193 + PB1D10 SINE Alu 9 117 0 4 774 285 224 127 17 chr4 24811368 24811486 -130818634 - L1M5 LINE L1 -2101 4045 3915 4 774 216 97 0 0 chr4 24811541 24811572 -130818548 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 774 402 70 0 19 chr4 24811587 24811653 -130818467 - B1_Mm SINE Alu -1 149 84 4 774 424 297 55 123 chr4 24811670 24811889 -130818231 - MLT1E1A LTR MaLR -194 486 283 4 774 239 155 0 49 chr4 24811906 24811967 -130818153 + (CTACT)n Simple_repeat Simple_repeat 1 58 0 4 774 189 0 0 0 chr4 24812355 24812376 -130817744 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 774 261 57 0 0 chr4 24812569 24812604 -130817516 + (CTATT)n Simple_repeat Simple_repeat 5 39 0 4 774 1201 88 0 0 chr4 24812809 24812956 -130817164 + B1_Mus1 SINE Alu 2 148 0 4 774 208 95 48 0 chr4 24812960 24813002 -130817118 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 774 229 245 156 21 chr4 24813002 24813098 -130817022 + MLT1D LTR MaLR 381 489 -16 4 774 990 264 150 19 chr4 24813310 24813630 -130816490 + MTEa LTR MaLR 18 379 0 4 774 686 272 41 0 chr4 24813630 24813799 -130816321 + MTEa-int LTR MaLR 1 176 -1404 4 774 2309 175 131 31 chr4 24813807 24814189 -130815931 - RLTR12A LTR ERVK -4 564 132 4 774 3802 70 40 16 chr4 24814189 24814683 -130815437 - L1Md_F2 LINE L1 -1 6581 6076 4 774 2309 175 131 31 chr4 24814683 24814813 -130815307 - RLTR12A LTR ERVK -437 131 1 4 774 815 263 5 5 chr4 24814818 24815005 -130815115 + MTEa-int LTR MaLR 181 367 -1213 4 774 1998 152 59 96 chr4 24815006 24815413 -130814707 + RLTR9C LTR ERVK 1 392 -1 4 774 4351 171 53 104 chr4 24815413 24816630 -130813490 + MMETn-int LTR ERVK 15 1169 -3675 4 774 2748 165 24 34 chr4 24816660 24817163 -130812957 + ETnERV2-int LTR ERVK 2500 2997 -4409 4 774 1000 121 0 18 chr4 24817163 24817331 -130812789 + RLTR13D1 LTR ERVK 486 650 -156 4 774 4305 180 32 37 chr4 24817841 24819862 -130810258 + ETnERV2-int LTR ERVK 2356 4085 -3321 4 774 489 120 0 0 chr4 24820080 24820155 -130809965 + ETnERV2-int LTR ERVK 7331 7405 -1 4 774 1858 157 55 86 chr4 24820156 24820553 -130809567 + RLTR9C LTR ERVK 1 385 -8 4 774 341 298 85 24 chr4 24820554 24820719 -130809401 + MTEa-int LTR MaLR 372 546 -1034 4 774 565 264 71 65 chr4 24820713 24820883 -130809237 + B3A SINE B2 26 196 -2 4 774 3217 246 144 23 chr4 24820933 24821829 -130808291 + MTEa-int LTR MaLR 575 1578 -2 4 774 721 285 159 103 chr4 24821831 24822171 -130807949 + MTEa LTR MaLR 1 359 -20 4 774 444 291 94 6 chr4 24822189 24822348 -130807772 + RMER5 LTR ERV1 353 525 -9 4 774 627 314 71 34 chr4 24822795 24823062 -130807058 - RMER15 LTR ERVL 0 575 299 4 774 230 308 110 0 chr4 24823404 24823495 -130806625 - L2a LINE L2 -25 3401 3301 4 774 360 0 0 0 chr4 24825911 24825951 -130804169 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 774 194 311 20 82 chr4 24826461 24826559 -130803561 - L2a LINE L2 -207 3168 3077 4 774 330 67 0 0 chr4 24826827 24826872 -130803248 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 774 209 159 0 16 chr4 24827018 24827082 -130803038 + T-rich Low_complexity Low_complexity 3 65 0 4 774 517 72 0 0 chr4 24827082 24827151 -130802969 - B1_Mus2 SINE Alu 0 147 79 4 774 22 0 0 0 chr4 24829258 24829280 -130800840 + AT_rich Low_complexity Low_complexity 1 22 0 4 774 30 45 0 0 chr4 24829559 24829603 -130800517 + AT_rich Low_complexity Low_complexity 1 44 0 4 774 181 309 0 0 chr4 24830792 24830834 -130799286 - MIR SINE MIR -30 232 191 4 774 223 269 19 0 chr4 24831542 24831600 -130798520 - PB1D10 SINE Alu -9 140 64 4 774 207 0 0 0 chr4 24832178 24832201 -130797919 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 774 461 283 65 7 chr4 24832203 24832342 -130797778 - RSINE1 SINE B4 -18 147 1 4 774 243 0 0 0 chr4 24835157 24835184 -130794936 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 774 2221 60 20 66 chr4 24835321 24835625 -130794495 + L1_Mus2 LINE L1 6277 6566 0 4 774 207 0 0 0 chr4 24836163 24836186 -130793934 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 774 977 78 78 0 chr4 24836622 24836750 -130793370 + B1_Mus1 SINE Alu 2 139 -9 4 774 222 37 0 0 chr4 24836750 24836777 -130793343 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 774 32 0 0 0 chr4 24836828 24836860 -130793260 + AT_rich Low_complexity Low_complexity 1 32 0 4 774 1178 57 14 0 chr4 24837034 24837175 -130792945 - B1_Mus1 SINE Alu -5 143 1 4 774 761 256 61 9 chr4 24837404 24837617 -130792503 - MTD LTR MaLR 0 419 196 4 774 4842 62 0 0 chr4 24837671 24838249 -130791871 - L1Md_F2 LINE L1 0 6582 6005 4 774 12385 54 1 1 chr4 24838251 24840476 -130789644 - L1Md_F2 LINE L1 0 6582 4359 4 774 461 268 178 11 chr4 24840476 24840650 -130789470 - MTD LTR MaLR -210 209 7 4 774 345 159 0 0 chr4 24840691 24840754 -130789366 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 4 774 741 314 68 8 chr4 24841035 24841301 -130788819 - B4 SINE B4 -9 283 2 4 774 435 52 0 0 chr4 24842167 24842225 -130787895 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 4 774 302 244 44 11 chr4 24843050 24843141 -130786979 - L1MC4 LINE L1 -648 7394 7301 4 774 327 205 11 46 chr4 24843942 24844029 -130786091 + RMER21B LTR ERV1 110 193 -649 4 774 334 260 167 125 chr4 24844069 24844238 -130785882 + RMER21B LTR ERV1 293 461 -381 4 774 1015 94 72 0 chr4 24844238 24844376 -130785744 - B1_Mus1 SINE Alu 0 148 1 4 774 334 260 167 125 chr4 24844376 24844470 -130785650 + RMER21B LTR ERV1 462 567 -275 4 774 841 243 44 74 chr4 24845242 24845513 -130784607 - MLT1B LTR MaLR -7 383 121 4 774 654 49 0 0 chr4 24845574 24845656 -130784464 + (TTC)n Simple_repeat Simple_repeat 2 83 0 4 774 271 326 64 74 chr4 24845853 24846055 -130784065 + LTR89 LTR ERVL? 550 749 -130 4 774 597 250 0 0 chr4 24846026 24846158 -130783962 + B1_Mur1 SINE Alu 18 149 0 5 774 294 29 0 0 chr4 24846634 24846669 -130783451 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 5 774 28 0 0 0 chr4 24846986 24847014 -130783106 + AT_rich Low_complexity Low_complexity 1 28 0 5 774 539 210 118 0 chr4 24847518 24847637 -130782483 + ID_B1 SINE B4 86 218 -6 5 774 2014 30 0 0 chr4 24848136 24848366 -130781754 + L1Md_F2 LINE L1 5357 5586 -297 5 774 8755 41 1 1 chr4 24848366 24849350 -130780770 + L1Md_F2 LINE L1 5587 6570 -12 5 774 263 314 74 33 chr4 24849395 24849517 -130780603 + MLT1A1 LTR MaLR 270 396 -12 5 774 507 117 0 0 chr4 24849530 24849624 -130780496 + (CAAG)n Simple_repeat Simple_repeat 2 95 0 5 774 408 294 22 0 chr4 24850634 24850726 -130779394 - B1F SINE Alu -39 110 17 5 774 682 106 19 0 chr4 24850726 24850830 -130779290 - Lx3_Mus LINE L1 -649 6360 6255 5 774 4906 79 31 2 chr4 24850827 24851620 -130778500 + Lx3_Mus LINE L1 5455 6271 -738 5 774 370 301 48 0 chr4 24852188 24852291 -130777829 + PB1 SINE Alu 1 108 -19 5 774 312 27 0 0 chr4 24852741 24852778 -130777342 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 774 1306 121 0 55 chr4 24852856 24853058 -130777062 + B2_Mm2 SINE B2 3 193 -2 5 774 3257 53 25 5 chr4 24853058 24853458 -130776662 + L1_Mus2 LINE L1 6159 6566 0 5 774 387 0 0 0 chr4 24853913 24853956 -130776164 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 774 372 43 0 0 chr4 24853975 24854021 -130776099 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 774 2492 115 105 3 chr4 24854311 24854703 -130775417 + Lx2 LINE L1 6566 6997 0 5 774 21 36 0 0 chr4 24854787 24854815 -130775305 + AT_rich Low_complexity Low_complexity 1 28 0 5 774 1458 117 0 0 chr4 24854874 24855080 -130775040 - L1_Mus1 LINE L1 -2 6565 6360 5 774 288 0 0 0 chr4 24855088 24855120 -130775000 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 774 198 0 0 0 chr4 24855239 24855261 -130774859 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 5 774 263 28 0 27 chr4 24855262 24855299 -130774821 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 5 774 740 281 194 35 chr4 24855590 24856187 -130773933 - L1ME2z LINE L1 -412 6032 5341 5 774 262 232 14 28 chr4 24856869 24856940 -130773180 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 5 774 24 32 0 0 chr4 24857697 24857728 -130772392 + AT_rich Low_complexity Low_complexity 1 31 0 5 774 273 109 0 0 chr4 24859251 24859297 -130770823 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 774 21 0 0 0 chr4 24859561 24859582 -130770538 + AT_rich Low_complexity Low_complexity 1 21 0 5 774 186 310 69 0 chr4 24860263 24860321 -130769799 - MIR SINE MIR -95 167 106 5 774 1099 187 33 28 chr4 24860339 24860554 -130769566 + B3 SINE B2 1 216 0 5 774 1090 231 9 5 chr4 24861243 24861456 -130768664 + B3 SINE B2 3 216 0 5 774 226 133 0 0 chr4 24861998 24862028 -130768092 - ID4_ SINE ID -16 67 38 5 774 369 227 0 0 chr4 24862054 24862120 -130768000 - ID4_ SINE ID -16 67 2 5 774 312 169 0 0 chr4 24862121 24862198 -130767922 + CT-rich Low_complexity Low_complexity 1 77 0 5 774 227 282 25 25 chr4 24862232 24862260 -130767860 - ID_B1 SINE B4 -41 183 104 5 774 250 216 0 19 chr4 24862260 24862312 -130767808 - PB1D10 SINE Alu -44 73 23 5 774 211 290 170 30 chr4 24862715 24862850 -130767270 - B3A SINE B2 0 198 45 5 774 430 306 42 73 chr4 24862735 24863010 -130767110 - RSINE1 SINE B4 -11 281 48 5 774 3080 180 70 96 chr4 24863010 24863790 -130766330 + RLTR40 LTR ERVK 3 762 -55 5 774 1390 48 0 0 chr4 24863791 24863957 -130766163 - L1_Mus1 LINE L1 -290 6276 6111 5 774 2431 56 3 3 chr4 24863957 24864245 -130765875 + L1_Mus1 LINE L1 6280 6567 0 5 774 715 237 16 37 chr4 24865414 24865613 -130764507 + B3 SINE B2 3 192 -3 5 774 932 211 13 35 chr4 24865631 24865862 -130764258 - Lx7 LINE L1 -483 7213 6988 5 774 6103 176 42 13 chr4 24865873 24867607 -130762513 - Lx4B LINE L1 -12 6964 5168 5 774 3625 208 29 11 chr4 24867604 24868305 -130761815 - Lx7 LINE L1 -689 7007 6295 5 774 579 228 52 114 chr4 24868325 24868597 -130761523 + Lx7 LINE L1 7442 7696 0 5 774 243 222 63 0 chr4 24870588 24870651 -130759469 + L1MA7 LINE L1 6221 6287 -4 5 774 234 0 0 0 chr4 24870902 24870928 -130759192 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 774 558 322 6 34 chr4 24871027 24871204 -130758916 + B4A SINE B4 1 172 -120 5 774 1457 67 17 0 chr4 24871632 24871810 -130758310 - B2_Mm2 SINE B2 -14 181 1 5 774 1020 97 86 52 chr4 24871839 24872013 -130758107 - B2_Mm2 SINE B2 -15 180 1 5 774 1329 81 15 3 chr4 24872614 24873207 -130756913 + (CCA)n Simple_repeat Simple_repeat 1 600 0 5 774 7654 70 0 15 chr4 24873602 24874548 -130755572 + L1Md_F2 LINE L1 5649 6580 -2 5 774 22 0 0 0 chr4 24874720 24874742 -130755378 + AT_rich Low_complexity Low_complexity 1 22 0 5 774 848 238 40 94 chr4 24874742 24874965 -130755155 - B3 SINE B2 -5 211 1 5 774 258 32 0 0 chr4 24875424 24875455 -130754665 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 774 1504 228 56 36 chr4 24875516 24875907 -130754213 + MTD LTR MaLR 19 417 -2 5 774 217 329 96 0 chr4 24876064 24876137 -130753983 - ID4_ SINE ID 0 83 4 5 774 795 254 35 0 chr4 24876412 24876585 -130753535 + B3A SINE B2 1 179 -19 5 774 21 36 0 0 chr4 24876608 24876636 -130753484 + AT_rich Low_complexity Low_complexity 1 28 0 5 774 291 54 0 0 chr4 24876831 24876868 -130753252 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 774 210 237 0 0 chr4 24876905 24876943 -130753177 - PB1 SINE Alu -73 54 17 5 774 204 313 58 48 chr4 24877158 24877262 -130752858 + L2a LINE L2 3321 3425 -1 5 774 195 114 0 0 chr4 24877411 24877446 -130752674 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 774 214 288 22 130 chr4 24877876 24877909 -130752211 - ID2 SINE ID 0 83 2 5 774 245 288 0 0 chr4 24877909 24877968 -130752152 - ID SINE ID -164 60 2 5 774 32 26 0 0 chr4 24878874 24878913 -130751207 + AT_rich Low_complexity Low_complexity 1 39 0 5 774 8031 48 0 0 chr4 24879117 24880074 -130750046 - L1Md_T LINE L1 -1 6581 5625 5 774 201 116 47 0 chr4 24880074 24880117 -130750003 + A-rich Low_complexity Low_complexity 3 47 0 5 774 2040 200 129 22 chr4 24880163 24880619 -130749501 + RLTR16 LTR ERVK 1 505 0 5 774 22 0 0 0 chr4 24880685 24880707 -130749413 + AT_rich Low_complexity Low_complexity 1 22 0 5 774 1969 229 135 60 chr4 24880738 24881533 -130748587 + MTD-int LTR MaLR 327 1256 -2 5 774 542 195 102 0 chr4 24881534 24881652 -130748468 + MTD LTR MaLR 1 130 -289 5 774 1096 304 106 16 chr4 24881804 24882238 -130747882 - Lx8 LINE L1 -349 7124 6652 5 774 286 224 24 18 chr4 24882232 24882325 -130747795 + L1_Mur2 LINE L1 4867 4956 -924 5 774 3810 153 42 35 chr4 24882351 24883061 -130747059 + RMER6D LTR ERVK 2 716 -4 5 774 2174 166 12 52 chr4 24883193 24883593 -130746527 + ORR1C2 LTR MaLR 1 384 0 5 774 5356 229 63 29 chr4 24883593 24885148 -130744972 + ORR1C2-int LTR MaLR 1 1580 0 5 774 2368 165 15 44 chr4 24885148 24885554 -130744566 + ORR1B1 LTR MaLR 1 394 0 5 774 1387 213 92 33 chr4 24885554 24885655 -130744465 + ORR1C2 LTR MaLR 283 384 0 5 774 406 287 8 50 chr4 24885787 24885908 -130744212 - B3A SINE B2 0 198 83 5 774 277 183 68 0 chr4 24885961 24886025 -130744095 - B3A SINE B2 -130 86 19 5 774 3557 144 100 2 chr4 24886615 24887227 -130742893 - Lx LINE L1 -2 6652 5981 5 774 2756 176 49 18 chr4 24887860 24888369 -130741751 - RLTR24 LTR ERV1 0 529 5 5 774 1164 208 69 9 chr4 24888369 24888587 -130741533 - RLTR41 LTR ERV1 0 446 216 5 774 1030 225 141 64 chr4 24888981 24889294 -130740826 + ORR1E LTR MaLR 23 359 0 5 774 321 26 0 0 chr4 24889379 24889417 -130740703 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 774 275 250 68 27 chr4 24889938 24890012 -130740108 + MER5B DNA MER1_type 96 172 -6 5 774 338 221 0 0 chr4 24890110 24890187 -130739933 - PB1D10 SINE Alu 0 117 41 5 774 392 37 0 18 chr4 24890744 24890799 -130739321 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 5 774 879 277 130 0 chr4 24890889 24891142 -130738978 - B4A SINE B4 0 292 7 5 774 195 42 0 0 chr4 24891557 24891581 -130738539 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 774 498 219 95 17 chr4 24891608 24891724 -130738396 - RSINE1 SINE B4 -35 130 6 5 774 21 71 0 0 chr4 24892203 24892245 -130737875 + AT_rich Low_complexity Low_complexity 1 42 0 5 774 234 174 0 0 chr4 24892428 24892474 -130737646 + C-rich Low_complexity Low_complexity 2 47 0 5 774 240 100 0 0 chr4 24893805 24893845 -130736275 + (CGGG)n Simple_repeat Simple_repeat 2 41 0 5 774 237 224 0 0 chr4 24894961 24895019 -130735101 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 774 186 103 0 0 chr4 24895019 24895048 -130735072 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 774 189 0 0 0 chr4 24895093 24895114 -130735006 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 774 230 229 0 14 chr4 24898101 24898172 -130731948 + CT-rich Low_complexity Low_complexity 2 71 0 5 774 352 18 73 0 chr4 24899105 24899160 -130730960 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 5 774 1271 154 26 0 chr4 24900446 24900641 -130729479 - B3 SINE B2 -14 202 3 5 774 296 292 132 43 chr4 24900980 24901464 -130728656 - L1MEe LINE L1 -3694 2314 1788 5 774 30 0 0 0 chr4 24901464 24901494 -130728626 + AT_rich Low_complexity Low_complexity 1 30 0 5 774 276 305 0 28 chr4 24901571 24901679 -130728441 - RMER12 LTR ERVK -472 850 746 5 774 235 255 85 68 chr4 24901823 24901941 -130728179 + MLT1B LTR MaLR 261 380 -10 5 774 273 325 52 25 chr4 24902113 24902374 -130727746 - L1MEe LINE L1 -4458 1550 1257 5 774 829 279 132 43 chr4 24902938 24903309 -130726811 - MTD LTR MaLR -14 405 2 5 96 699 249 130 0 chr4 24903551 24903728 -130726392 - B3 SINE B2 -5 211 12 5 775 272 193 65 98 chr4 24903870 24903962 -130726158 + MLT1A1 LTR MaLR 320 408 0 5 775 576 246 74 7 chr4 24904140 24904275 -130725845 + B3A SINE B2 2 145 -53 5 775 1306 283 89 22 chr4 24904464 24905007 -130725113 - Lx6 LINE L1 0 7460 6506 6 775 680 284 0 23 chr4 24905010 24905183 -130724937 - Lx6 LINE L1 -686 6364 6196 6 775 736 177 112 22 chr4 24906691 24906870 -130723250 + B2_Mm2 SINE B2 1 195 0 6 775 24 32 0 0 chr4 24906885 24906916 -130723204 + AT_rich Low_complexity Low_complexity 1 31 0 6 775 21 36 0 0 chr4 24906927 24906955 -130723165 + AT_rich Low_complexity Low_complexity 1 28 0 6 775 1099 175 21 55 chr4 24908120 24908356 -130721764 - Lx5 LINE L1 -1 7049 6822 6 775 480 351 12 24 chr4 24908705 24908874 -130721246 - B4A SINE B4 -124 168 2 6 775 313 279 30 66 chr4 24909382 24909555 -130720565 - L1MB7 LINE L1 -268 5910 5748 6 775 1926 152 64 21 chr4 24909555 24909884 -130720236 + MTC LTR MaLR 79 421 0 6 775 1342 196 154 44 chr4 24909883 24910246 -130719874 + MTC-int LTR MaLR 2 404 -854 6 775 953 168 38 129 chr4 24910242 24910529 -130719591 + MTC-int LTR MaLR 996 1256 -2 6 775 2139 156 95 10 chr4 24910531 24910919 -130719201 + MTC LTR MaLR 1 421 0 6 775 433 260 65 34 chr4 24910921 24911147 -130718973 - L1MEg LINE L1 -865 5281 5055 6 775 314 256 0 12 chr4 24911209 24911292 -130718828 - ID2 SINE ID 0 83 2 6 775 328 274 88 0 chr4 24911294 24911396 -130718724 - PB1D9 SINE Alu -4 116 6 6 775 324 335 98 25 chr4 24911724 24911960 -130718160 - L1M5 LINE L1 -344 5829 5577 6 775 291 54 0 0 chr4 24912214 24912251 -130717869 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 775 225 323 47 79 chr4 24912273 24912488 -130717632 - MTEa LTR MaLR -7 372 165 6 775 286 323 36 54 chr4 24913001 24913168 -130716952 - L1MEg LINE L1 -5827 415 252 6 775 801 136 136 0 chr4 24913561 24913686 -130716434 + B1_Mus2 SINE Alu 1 142 -5 6 775 330 286 39 23 chr4 24913786 24913915 -130716205 - L1MB1 LINE L1 -143 6046 5916 6 775 2106 277 78 29 chr4 24914408 24915189 -130714931 - Lx8 LINE L1 -17 7456 6638 6 775 1031 244 15 0 chr4 24915292 24915493 -130714627 - B3 SINE B2 -11 205 2 6 775 1791 242 18 25 chr4 24915538 24915975 -130714145 + Lx8 LINE L1 6196 6629 -844 6 775 307 313 114 0 chr4 24916270 24916401 -130713719 + MIRb SINE MIR 2 147 -121 6 775 1977 208 43 76 chr4 24916440 24916951 -130713169 - RLTR11A2 LTR ERVK -33 494 1 6 775 1446 163 25 0 chr4 24916951 24917190 -130712930 - RMER20A LTR ERVK -266 250 6 6 775 896 203 95 9 chr4 24917161 24917430 -130712690 - ORR1D1 LTR MaLR -76 318 1 6 775 2422 202 42 6 chr4 24917430 24917912 -130712208 - ORR1D1-int LTR MaLR 0 1370 872 6 775 369 43 0 0 chr4 24917912 24917959 -130712161 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 775 480 18 0 0 chr4 24917970 24918027 -130712093 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 775 559 240 12 6 chr4 24918050 24918207 -130711913 - MT2A LTR ERVL -75 526 243 6 775 770 0 11 0 chr4 24918216 24918306 -130711814 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 775 389 259 24 0 chr4 24919011 24919096 -130711024 + 5S rRNA rRNA 2 88 -33 6 775 996 249 60 19 chr4 24919312 24919578 -130710542 - ORR1E LTR MaLR -80 279 3 6 775 2797 137 58 27 chr4 24919820 24920300 -130709820 + Lx4B LINE L1 6456 6950 -108 6 775 1404 230 69 12 chr4 24920541 24920875 -130709245 + ORR1D1 LTR MaLR 3 355 -19 6 775 4198 224 101 24 chr4 24920890 24921953 -130708167 + ORR1D1-int LTR MaLR 1 1145 -225 6 775 1493 207 60 16 chr4 24921954 24922273 -130707847 + ORR1D1 LTR MaLR 42 374 0 6 775 1014 254 135 17 chr4 24922536 24922886 -130707234 + MTD LTR MaLR 10 403 -16 6 775 411 222 170 0 chr4 24923364 24923517 -130706603 + L1MD1 LINE L1 6053 6231 -11 6 775 192 40 0 0 chr4 24923828 24923853 -130706267 + (T)n Simple_repeat Simple_repeat 1 25 0 6 775 439 152 160 0 chr4 24924350 24924475 -130705645 + Lx9 LINE L1 7498 7642 -2 6 775 185 211 19 0 chr4 24924684 24924736 -130705384 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 775 249 33 0 0 chr4 24924807 24924837 -130705283 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 775 309 51 0 0 chr4 24924837 24924875 -130705245 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 775 229 188 0 0 chr4 24925032 24925080 -130705040 + Lx2 LINE L1 6950 6997 0 6 775 22 56 0 0 chr4 24925117 24925153 -130704967 + AT_rich Low_complexity Low_complexity 1 36 0 6 775 506 231 17 8 chr4 24925705 24925823 -130704297 - B1F SINE Alu -3 146 28 6 775 2185 122 71 6 chr4 24925823 24926161 -130703959 - Lx2A LINE L1 0 7008 6649 6 775 1083 272 30 19 chr4 24926300 24926566 -130703554 - B4A SINE B4 -9 283 15 6 775 378 0 0 0 chr4 24926725 24926767 -130703353 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 775 612 0 0 0 chr4 24926807 24926875 -130703245 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 775 186 43 0 0 chr4 24927261 24927284 -130702836 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 775 530 199 148 28 chr4 24927886 24928103 -130702017 + Lx9 LINE L1 7401 7643 -1 6 775 745 196 27 20 chr4 24928125 24928271 -130701849 + B1_Mur2 SINE Alu 3 149 0 6 775 372 103 0 0 chr4 24928721 24928779 -130701341 + (TATG)n Simple_repeat Simple_repeat 2 59 0 6 775 531 0 0 0 chr4 24928779 24928838 -130701282 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 775 995 243 273 3 chr4 24929813 24930143 -130699977 - MTD LTR MaLR 0 419 1 6 775 271 255 94 21 chr4 24930476 24930572 -130699548 + ORR1E LTR MaLR 1 103 -256 6 775 236 257 38 75 chr4 24931522 24931602 -130698518 - ID4_ SINE ID -3 80 4 6 775 22 56 0 0 chr4 24931664 24931700 -130698420 + AT_rich Low_complexity Low_complexity 1 36 0 6 775 204 97 0 0 chr4 24931716 24931747 -130698373 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 775 696 269 0 82 chr4 24931757 24931927 -130698193 - RSINE1 SINE B4 -2 163 8 6 775 229 327 29 9 chr4 24933075 24933180 -130696940 + GA-rich Low_complexity Low_complexity 4 110 0 6 775 1284 281 101 21 chr4 24933446 24933923 -130696197 - Lx8 LINE L1 0 7473 6959 6 775 249 279 35 71 chr4 24934125 24934210 -130695910 + AmnSINE1 SINE SINE 3 84 -491 6 775 212 158 0 0 chr4 24935800 24935838 -130694282 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 775 885 138 0 0 chr4 24936977 24937122 -130692998 + (TCCC)n Simple_repeat Simple_repeat 1 145 0 6 775 273 349 0 0 chr4 24937132 24937215 -130692905 - ID_B1 SINE B4 -1 223 141 6 775 216 0 0 0 chr4 24937504 24937528 -130692592 + (T)n Simple_repeat Simple_repeat 1 24 0 6 775 23 0 0 0 chr4 24939700 24939723 -130690397 + AT_rich Low_complexity Low_complexity 1 23 0 6 775 236 299 29 29 chr4 24940752 24940821 -130689299 - B1F1 SINE Alu -78 71 3 6 775 329 279 129 29 chr4 24940830 24940970 -130689150 - HAL1-3A_ME LINE L1 -421 2437 2284 6 775 231 36 0 0 chr4 24940972 24941000 -130689120 + (TCC)n Simple_repeat Simple_repeat 2 29 0 6 775 355 250 68 0 chr4 24941001 24941089 -130689031 - RSINE1 SINE B4 -69 96 3 6 775 189 0 0 0 chr4 24941638 24941659 -130688461 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 775 28827 109 9 11 chr4 24943315 24948839 -130681281 - L1_Mus2 LINE L1 0 6566 1071 6 775 3348 38 5 0 chr4 24948839 24949233 -130680887 - MTA_Mm LTR MaLR 0 396 1 6 775 7994 73 21 2 chr4 24949234 24950310 -130679810 - MTA_Mm-int LTR MaLR -1 1097 1 6 775 1092 69 0 33 chr4 24950310 24950460 -130679660 - MTA_Mm LTR MaLR 0 396 252 6 775 526 39 12 93 chr4 24950422 24950508 -130679612 + MTB LTR MaLR 196 274 -126 6 775 507 107 0 0 chr4 24950910 24950985 -130679135 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 775 529 228 0 10 chr4 24950995 24951097 -130679023 - B4A SINE B4 -23 269 169 6 775 299 387 33 13 chr4 24951409 24951561 -130678559 - MLT1J2 LTR MaLR -244 204 50 6 775 324 0 0 0 chr4 24951782 24951818 -130678302 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 775 601 282 66 69 chr4 24951867 24951911 -130678209 - B4A SINE B4 -16 276 226 6 775 312 70 0 0 chr4 24951911 24951954 -130678166 + (TTA)n Simple_repeat Simple_repeat 1 43 0 6 775 601 282 66 69 chr4 24951954 24952183 -130677937 - B4A SINE B4 -67 225 6 6 775 459 292 91 58 chr4 24952319 24952628 -130677492 - ORR1E LTR MaLR 0 359 41 6 775 1326 78 0 0 chr4 24953536 24953716 -130676404 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 775 1179 103 0 11 chr4 24953716 24953893 -130676227 - B2_Mm2 SINE B2 -19 176 2 6 775 3958 62 2 15 chr4 24954428 24954951 -130675169 - L1_Mus1 LINE L1 -1 6566 6051 6 775 500 273 96 19 chr4 24955179 24955393 -130674727 + ORR1E LTR MaLR 1 228 -142 6 775 543 317 218 11 chr4 24956156 24956667 -130673453 + Arthur1B DNA Tip100 331 973 -252 6 775 459 52 0 0 chr4 24956667 24956725 -130673395 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 775 373 299 211 17 chr4 24956725 24956898 -130673222 + Arthur1B DNA Tip100 974 1170 -55 6 775 528 274 30 105 chr4 24957458 24957488 -130672632 - B2_Mm2 SINE B2 -10 185 161 6 775 966 96 0 0 chr4 24957488 24957654 -130672466 + (TC)n Simple_repeat Simple_repeat 2 167 0 6 775 731 272 33 11 chr4 24957654 24957823 -130672297 - B3A SINE B2 -35 160 1 6 775 1206 61 0 0 chr4 24957838 24957985 -130672135 - B1_Mus2 SINE Alu 0 147 1 6 775 405 268 54 40 chr4 24957986 24958091 -130672029 - MLT1D LTR MaLR -56 449 342 6 775 1201 49 7 0 chr4 24958091 24958235 -130671885 - B1_Mm SINE Alu 0 147 3 6 775 405 268 54 40 chr4 24958235 24958277 -130671843 - MLT1D LTR MaLR -164 341 301 6 775 1820 152 79 64 chr4 24958557 24958950 -130671170 + MTD LTR MaLR 13 411 -8 6 775 3243 235 107 85 chr4 24958953 24959289 -130670831 + MTD-int LTR MaLR 2 346 -912 6 775 1446 62 0 35 chr4 24959289 24959449 -130670671 + B2_Mm1a SINE B2 1 160 -33 6 775 186 43 0 0 chr4 24959449 24959472 -130670648 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 775 1446 62 0 35 chr4 24959472 24959511 -130670609 + B2_Mm1a SINE B2 161 193 0 6 775 3243 235 107 85 chr4 24959511 24960126 -130669994 + MTD-int LTR MaLR 347 1037 -221 6 775 252 0 0 0 chr4 24960126 24960154 -130669966 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 775 3243 235 107 85 chr4 24960154 24960431 -130669689 + MTD-int LTR MaLR 1038 1258 0 6 775 1230 186 225 12 chr4 24960435 24960777 -130669343 + MTD LTR MaLR 5 419 0 6 775 248 256 35 35 chr4 24961394 24961479 -130668641 + MTE2a LTR MaLR 281 365 -14 6 775 452 262 210 12 chr4 24961709 24961871 -130668249 + MLT1A0 LTR MaLR 1 194 -171 6 775 212 114 0 43 chr4 24961899 24961945 -130668175 + A-rich Low_complexity Low_complexity 3 46 0 6 775 394 349 20 0 chr4 24961999 24962145 -130667975 + MLT1A0 LTR MaLR 217 365 0 6 775 186 189 0 0 chr4 24962145 24962182 -130667938 + (CATATA)n Simple_repeat Simple_repeat 1 37 0 6 775 337 163 46 151 chr4 24962182 24962290 -130667830 - B1_Mur3 SINE Alu -1 148 41 6 775 1855 261 29 48 chr4 24962418 24962977 -130667143 - Lx8 LINE L1 -156 7317 6770 6 775 289 184 0 44 chr4 24963463 24963529 -130666591 + CT-rich Low_complexity Low_complexity 25 88 0 7 775 216 97 0 0 chr4 24963529 24963560 -130666560 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 775 289 184 0 44 chr4 24963560 24963584 -130666536 + polypyrimidine Low_complexity Low_complexity 2 24 0 7 775 596 228 35 41 chr4 24963653 24963717 -130666403 - Lx8 LINE L1 -696 6777 6709 6 775 180 0 0 0 chr4 24963717 24963737 -130666383 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 775 596 228 35 41 chr4 24963737 24963841 -130666279 - Lx8 LINE L1 -765 6708 6611 6 775 508 284 17 8 chr4 24963841 24963958 -130666162 - B4A SINE B4 -171 121 4 7 775 1308 226 7 67 chr4 24964187 24964623 -130665497 - RMER17C LTR ERVK 0 410 1 7 775 22 35 0 0 chr4 24965929 24965958 -130664162 + AT_rich Low_complexity Low_complexity 1 29 0 7 775 581 281 67 26 chr4 24967660 24967927 -130662193 - RMER15-int LTR ERVL -4720 279 2 7 775 277 207 42 94 chr4 24968026 24968122 -130661998 - RMER15 LTR ERVL -148 427 337 7 775 539 208 40 52 chr4 24969157 24969286 -130660834 - Lx7 LINE L1 -4 7692 7555 7 775 252 0 0 0 chr4 24969286 24969314 -130660806 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 775 539 208 40 52 chr4 24969314 24969433 -130660687 - Lx7 LINE L1 -142 7554 7447 7 775 3733 188 34 18 chr4 24969463 24970199 -130659921 - Lx7 LINE L1 -745 6951 6204 7 775 435 125 0 0 chr4 24970200 24970272 -130659848 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 775 3210 44 0 0 chr4 24970358 24970747 -130659373 - L1Md_F2 LINE L1 -12 6570 6182 7 775 21 0 0 0 chr4 24970979 24971000 -130659120 + AT_rich Low_complexity Low_complexity 1 21 0 7 775 585 283 32 21 chr4 24971164 24971352 -130658768 + B3A SINE B2 1 190 -8 7 775 1441 68 0 5 chr4 24971607 24971800 -130658320 - L1_Mus2 LINE L1 -1 6565 6374 7 775 348 24 0 0 chr4 24971800 24971841 -130658279 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 775 1123 237 35 25 chr4 24972111 24972397 -130657723 + Lx8 LINE L1 6815 7103 -370 7 775 718 161 102 45 chr4 24973272 24973448 -130656672 - B2_Mm2 SINE B2 -9 186 1 7 775 275 257 152 0 chr4 24973889 24973994 -130656126 + RMER5 LTR ERV1 40 160 -374 7 775 3954 79 18 2 chr4 24974534 24975080 -130655040 + L1_Mus3 LINE L1 6077 6631 -7 7 775 246 174 0 0 chr4 24975084 24975130 -130654990 + GA-rich Low_complexity Low_complexity 2 47 0 7 775 1200 81 0 0 chr4 24975131 24975379 -130654741 + (GAA)n Simple_repeat Simple_repeat 1 248 0 7 775 4431 27 0 0 chr4 24975430 24975941 -130654179 + L1Md_A LINE L1 6072 6582 0 7 775 1195 61 0 0 chr4 24975955 24976102 -130654018 + B1_Mus2 SINE Alu 1 147 0 7 775 216 97 0 0 chr4 24976102 24976133 -130653987 + (A)n Simple_repeat Simple_repeat 1 31 0 7 775 521 323 37 0 chr4 24976166 24976327 -130653793 - B4A SINE B4 -2 290 124 7 775 339 281 114 38 chr4 24976559 24976770 -130653350 + L1MA4 LINE L1 5711 5937 -363 7 775 366 115 0 0 chr4 24977266 24977327 -130652793 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 775 258 330 40 30 chr4 24977387 24977487 -130652633 - MamGypLTR1b LTR Gypsy -233 549 449 7 775 7917 40 4 1 chr4 24977523 24978758 -130651362 - L1Md_F3 LINE L1 -1 6583 5345 7 775 408 203 129 14 chr4 24978939 24979079 -130651041 + MER67C LTR ERV1 553 708 -3 7 775 225 143 216 54 chr4 24979084 24979158 -130650962 - RLTR14 LTR ERV1 0 382 297 7 775 1701 139 11 0 chr4 24979171 24979438 -130650682 - RMER6A LTR ERVK -486 270 1 7 775 630 334 57 60 chr4 24979699 24980345 -130649775 - RLTR14-int LTR ERV1 -1472 3845 3202 7 775 517 242 8 129 chr4 24980373 24980597 -130649523 + RLTR11B LTR ERVK 117 338 -189 7 775 1290 165 47 55 chr4 24980685 24980942 -130649178 - RLTR41 LTR ERV1 0 446 192 7 775 613 175 77 42 chr4 24981670 24981813 -130648307 + B1_Mur3 SINE Alu 1 148 -1 7 775 411 342 93 0 chr4 24982022 24982215 -130647905 + MER67C LTR ERV1 171 381 -330 7 775 1061 109 0 0 chr4 24982456 24982603 -130647517 + B1_Mus1 SINE Alu 1 147 -1 7 775 408 263 45 8 chr4 24982682 24982816 -130647304 + L1_Mus1 LINE L1 664 802 -5814 7 775 12129 120 9 23 chr4 24982825 24985298 -130644822 + L1_Mus1 LINE L1 725 3154 -2729 7 775 11194 103 28 3 chr4 24985299 24985395 -130644725 + L1_Mus1 LINE L1 4094 4197 -1686 7 775 387 0 0 0 chr4 24985395 24985438 -130644682 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 775 477 0 0 0 chr4 24985438 24985490 -130644630 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 775 11194 98 18 2 chr4 24985490 24987783 -130642337 + L1_Mus1 LINE L1 4198 6529 -38 7 775 1466 238 48 7 chr4 24987783 24988154 -130641966 + MTD LTR MaLR 42 421 0 7 775 471 172 32 0 chr4 24988154 24988246 -130641874 + ORR1D1 LTR MaLR 280 374 0 7 775 507 60 0 0 chr4 24988516 24988583 -130641537 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 775 378 259 165 41 chr4 24988583 24988704 -130641416 - RSINE1 SINE B4 -24 141 6 7 775 372 304 8 23 chr4 24989789 24989917 -130640203 + PB1 SINE Alu 2 127 0 7 775 250 209 29 125 chr4 24990130 24990234 -130639886 - L1M2 LINE L1 -509 5788 5695 7 775 317 384 8 8 chr4 24990431 24990557 -130639563 - HAL1 LINE L1 -1605 902 777 7 775 259 222 10 29 chr4 24990813 24990915 -130639205 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 7 775 285 214 0 0 chr4 24990955 24991011 -130639109 + A-rich Low_complexity Low_complexity 1 56 0 7 775 23 54 0 0 chr4 24991137 24991174 -130638946 + AT_rich Low_complexity Low_complexity 1 37 0 7 775 254 271 89 20 chr4 24991177 24991362 -130638758 - L1MA5 LINE L1 -180 6120 5926 7 775 394 197 17 0 chr4 24991850 24991967 -130638153 + (TA)n Simple_repeat Simple_repeat 2 120 0 7 775 238 192 19 0 chr4 24991971 24992023 -130638097 - MTEb LTR MaLR 0 379 327 7 775 303 383 56 14 chr4 24992027 24992170 -130637950 - B1F SINE Alu 0 149 1 7 775 559 275 284 22 chr4 24994163 24994483 -130635637 - MLT2B1 LTR ERVL -62 458 55 7 775 242 373 64 0 chr4 24994811 24994921 -130635199 - MER45R DNA Tip100 -1464 117 1 7 775 493 283 41 24 chr4 24994964 24995087 -130635033 - ID_B1 SINE B4 -7 217 93 7 775 1831 228 152 21 chr4 24995289 24995817 -130634303 + Lx9 LINE L1 7005 7601 -43 7 775 33 66 0 0 chr4 24995817 24995878 -130634242 + AT_rich Low_complexity Low_complexity 1 61 0 7 775 2148 124 3 9 chr4 24995879 24996220 -130633900 + L1_Mm LINE L1 5459 5797 -86 7 775 8337 82 1 0 chr4 24996223 24997391 -130632729 - L1_Mm LINE L1 -288 5595 4427 7 775 15152 30 3 0 chr4 24997427 25000000 -130630120 - L1Md_T LINE L1 -1 6581 3999 7 775 1015 60 0 0 chr4 25000000 25000134 -130629986 - L1_Mm LINE L1 -1885 3998 3865 1 775 6762 80 26 6 chr4 25000134 25001068 -130629052 + L1Md_F2 LINE L1 5619 6570 -12 2 775 6366 76 11 1 chr4 25001063 25001909 -130628211 + L1_Mus3 LINE L1 5783 6636 -2 3 775 329 197 158 0 chr4 25002065 25002141 -130627979 + MT2B LTR ERVL 1 88 -445 4 775 268 0 45 45 chr4 25002142 25002186 -130627934 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 5 775 1017 249 98 34 chr4 25002246 25002542 -130627578 + MT2B LTR ERVL 253 570 -31 4 775 423 0 0 0 chr4 25002542 25002589 -130627531 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 775 1017 249 98 34 chr4 25002589 25002620 -130627500 + MT2B LTR ERVL 571 601 0 4 775 222 37 0 0 chr4 25002784 25002811 -130627309 + (TATAA)n Simple_repeat Simple_repeat 2 28 0 7 775 27 29 0 0 chr4 25003613 25003647 -130626473 + AT_rich Low_complexity Low_complexity 1 34 0 8 775 306 0 0 0 chr4 25003722 25003756 -130626364 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 775 443 356 42 66 chr4 25004932 25005173 -130624947 - B4A SINE B4 0 292 58 1 775 22 35 0 0 chr4 25006012 25006041 -130624079 + AT_rich Low_complexity Low_complexity 1 29 0 1 775 1789 162 22 9 chr4 25006216 25006534 -130623586 + RMER6C LTR ERVK 3 324 -366 1 775 32926 69 3 6 chr4 25006534 25011708 -130618412 + L1Md_F2 LINE L1 218 5586 -297 1 775 7728 58 6 11 chr4 25011708 25012708 -130617412 + L1Md_F2 LINE L1 5587 6581 -1 1 775 4545 80 64 9 chr4 25012708 25013365 -130616755 + L1Md_F2 LINE L1 5890 6582 0 1 775 1476 208 60 17 chr4 25013368 25013721 -130616399 + RMER6C LTR ERVK 323 690 0 1 775 21465 156 29 50 chr4 25013811 25017759 -130612361 + L1VL4 LINE L1 368 4346 -1537 1 775 484 250 43 98 chr4 25017759 25017777 -130612343 + B4 SINE B4 76 225 -62 1 775 962 113 7 0 chr4 25017777 25017918 -130612202 + B1_Mus1 SINE Alu 6 147 -1 1 775 21465 156 29 50 chr4 25017923 25019352 -130610768 + L1VL4 LINE L1 4347 5788 -95 1 775 3842 143 43 66 chr4 25019396 25020473 -130609647 - RLTR13D1 LTR ERVK 0 1023 1 1 775 530 188 42 27 chr4 25020562 25020680 -130609440 + MT2A LTR ERVL 4 140 -353 1 775 1122 78 0 0 chr4 25020680 25020822 -130609298 - B1_Mus1 SINE Alu -5 143 2 2 775 1149 243 189 43 chr4 25020822 25021224 -130608896 + MT2A LTR ERVL 97 464 -69 1 775 329 0 24 0 chr4 25021237 25021278 -130608842 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 775 423 0 0 0 chr4 25021278 25021324 -130608796 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 775 4312 198 55 32 chr4 25021324 25022318 -130607802 - RLTR25A LTR ERVK -1 1102 2 2 775 696 264 122 75 chr4 25022406 25022494 -130607626 + MTD LTR MaLR 5 92 -327 2 775 369 0 0 0 chr4 25022494 25022535 -130607585 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 775 696 272 128 65 chr4 25022535 25022753 -130607367 + MTD LTR MaLR 93 346 -75 2 775 631 196 70 7 chr4 25022757 25022898 -130607222 + MTD LTR MaLR 240 398 -21 2 775 1288 249 23 83 chr4 25023064 25023449 -130606671 - RLTR26 LTR ERVK -5 637 276 2 775 598 184 261 12 chr4 25023505 25023670 -130606450 - B3 SINE B2 -10 206 1 2 775 25 31 0 0 chr4 25023695 25023727 -130606393 + AT_rich Low_complexity Low_complexity 1 32 0 2 775 1907 125 24 63 chr4 25023985 25024317 -130605803 + ORR1A4 LTR MaLR 1 319 -10 2 775 1837 124 64 61 chr4 25024576 25024919 -130605201 - RMER6A LTR ERVK 0 756 413 3 775 1470 206 88 0 chr4 25024913 25025233 -130604887 + MTC LTR MaLR 74 421 0 3 775 268 277 21 28 chr4 25025278 25025419 -130604701 + L1_Mur3 LINE L1 4086 4225 -1655 3 775 420 126 0 0 chr4 25025433 25025520 -130604600 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 3 775 486 0 0 0 chr4 25025522 25025576 -130604544 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 775 495 0 0 0 chr4 25025684 25025739 -130604381 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 775 324 0 0 0 chr4 25025739 25025774 -130604346 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 775 1075 278 53 32 chr4 25025820 25026382 -130603738 + L1_Mur3 LINE L1 4515 5088 -792 3 775 2761 311 49 36 chr4 25026415 25027388 -130602732 + Lx8 LINE L1 6197 7183 -290 3 775 1625 186 64 53 chr4 25027388 25027825 -130602295 - RMER10A LTR ERVL 0 442 1 3 775 2761 311 49 36 chr4 25027825 25027972 -130602148 + Lx8 LINE L1 7184 7332 -141 3 775 474 88 0 0 chr4 25027972 25028040 -130602080 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 775 2761 311 49 36 chr4 25028040 25028176 -130601944 + Lx8 LINE L1 7333 7471 -2 3 775 5572 242 11 25 chr4 25030226 25031568 -130598552 + RodERV21-int LTR ERV1 1396 2718 -2273 4 775 386 85 12 12 chr4 25032174 25032246 -130597874 - ORR1A2 LTR MaLR 0 327 255 4 775 2201 207 89 2 chr4 25032854 25033358 -130596762 - Lx7 LINE L1 -399 7297 6750 4 775 391 281 0 11 chr4 25033358 25033443 -130596677 + URR1A DNA MER1_type 1 84 -142 4 775 800 272 70 34 chr4 25033443 25033770 -130596350 + RLTR15 LTR ERVK 2 340 -19 4 775 818 175 0 0 chr4 25033783 25033926 -130596194 + URR1A DNA MER1_type 78 220 -6 4 775 962 201 57 33 chr4 25033930 25034021 -130596099 - Lx7 LINE L1 -928 6768 6678 4 775 2315 73 143 0 chr4 25034021 25034335 -130595785 + RLTR10D LTR ERVK 1 359 0 4 775 962 201 57 33 chr4 25034335 25034454 -130595666 - Lx7 LINE L1 -1019 6677 6553 4 96 1961 194 2 5 chr4 25034720 25035123 -130594997 + L1Md_A LINE L1 380 781 -5835 4 776 36748 6 0 0 chr4 25035123 25040687 -130589433 + L1Md_A LINE L1 24 5586 -297 4 776 8963 5 0 2 chr4 25040687 25041685 -130588435 + L1Md_A LINE L1 5587 6582 0 4 776 2885 108 5 38 chr4 25041706 25042552 -130587568 + L1Md_A LINE L1 800 1609 -4274 4 776 1490 101 0 0 chr4 25042563 25042801 -130587319 + L1Md_A LINE L1 3117 3354 -2529 4 776 3942 29 0 0 chr4 25042810 25043266 -130586854 + L1Md_T LINE L1 6127 6582 0 4 776 360 339 34 30 chr4 25043543 25043856 -130586264 + MuLV-int LTR ERV1 2079 2415 -5191 4 776 582 322 47 32 chr4 25043899 25044343 -130585777 + MuLV-int LTR ERV1 4108 4441 -3165 4 776 1645 273 27 8 chr4 25044693 25045177 -130584943 + MuRRS4-int LTR ERV1 3533 4025 -1038 5 776 432 0 0 0 chr4 25045197 25045245 -130584875 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 776 436 341 15 15 chr4 25045933 25046204 -130583916 + MuRRS4-int LTR ERV1 4663 4933 -130 5 776 2259 103 137 0 chr4 25046311 25046699 -130583421 + RLTR47_MM LTR ERV1 1 441 -91 5 776 236 288 15 15 chr4 25046855 25046922 -130583198 - MTEa LTR MaLR -7 372 306 5 776 216 0 0 0 chr4 25047474 25047498 -130582622 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 776 654 306 54 18 chr4 25047525 25047801 -130582319 - B4A SINE B4 -6 286 1 5 776 227 204 41 0 chr4 25047900 25047949 -130582171 + ORR1C2 LTR MaLR 272 322 -62 5 776 36 0 0 0 chr4 25047949 25047985 -130582135 + AT_rich Low_complexity Low_complexity 1 36 0 5 776 1360 298 42 80 chr4 25047995 25048787 -130581333 + RMER19B LTR ERVK 1 902 0 5 776 22 0 0 0 chr4 25048790 25048812 -130581308 + AT_rich Low_complexity Low_complexity 1 22 0 5 776 197 250 235 12 chr4 25049813 25049894 -130580226 - MIRb SINE MIR -84 184 86 6 776 21 36 0 0 chr4 25050429 25050457 -130579663 + AT_rich Low_complexity Low_complexity 1 28 0 6 776 234 206 14 113 chr4 25050616 25050687 -130579433 - MTEa LTR MaLR -159 220 157 5 776 25139 72 1 0 chr4 25050687 25054173 -130575947 + L1_Mm LINE L1 2066 5555 -328 6 776 1376 232 71 16 chr4 25054177 25054204 -130575916 + RMER6C LTR ERVK 289 321 -369 6 776 7473 55 26 5 chr4 25054204 25055180 -130574940 + L1Md_F2 LINE L1 5587 6582 0 6 776 1376 232 71 16 chr4 25055180 25055533 -130574587 + RMER6C LTR ERVK 322 690 0 6 776 18230 162 29 56 chr4 25055622 25059571 -130570549 + L1VL4 LINE L1 368 4337 -1546 6 776 484 250 43 98 chr4 25059571 25059589 -130570531 + B4 SINE B4 76 225 -62 6 776 962 113 7 0 chr4 25059589 25059730 -130570390 + B1_Mus1 SINE Alu 6 147 -1 6 776 18230 162 29 56 chr4 25059735 25060638 -130569482 + L1VL4 LINE L1 4338 5247 -636 6 776 7563 2 0 0 chr4 25060638 25061470 -130568650 + L1Md_A LINE L1 5751 6582 0 6 776 18230 166 26 65 chr4 25061470 25061530 -130568590 + L1VL4 LINE L1 5248 5301 -582 6 776 11258 70 48 1 chr4 25061527 25064340 -130565780 + L1Md_A LINE L1 557 3688 -2192 6 776 565 14 0 0 chr4 25064339 25064410 -130565710 - L1_Mm LINE L1 -2623 3260 3190 7 776 2052 97 0 0 chr4 25064398 25064728 -130565392 - L1Md_F LINE L1 -3602 2284 1955 7 776 4025 80 22 20 chr4 25064732 25065506 -130564614 - L1Md_F LINE L1 -5411 1208 366 7 776 625 339 62 18 chr4 25065506 25066071 -130564049 - RLTR6-int LTR ERV1 -5810 1968 1379 7 776 399 21 0 0 chr4 25066096 25066144 -130563976 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 776 277 234 113 28 chr4 25066691 25066832 -130563288 - RLTR6-int LTR ERV1 -6878 678 526 7 776 595 221 122 44 chr4 25067386 25067590 -130562530 - RLTR47_MM LTR ERV1 -8 524 305 7 776 273 214 107 38 chr4 25067589 25067720 -130562400 + MLT1B LTR MaLR 16 155 -235 7 776 1211 301 61 9 chr4 25067725 25068324 -130561796 + Lx5 LINE L1 6455 6946 -104 7 776 702 84 0 10 chr4 25068326 25068422 -130561698 + RMER19A LTR ERVK 643 737 0 7 776 3095 202 34 68 chr4 25068431 25070098 -130560022 - Lx6 LINE L1 -1288 6172 4608 7 776 6477 161 29 12 chr4 25070097 25071850 -130558270 + Lx2B LINE L1 5215 7000 0 7 776 223 372 0 13 chr4 25071958 25072037 -130558083 + ID4_ SINE ID 6 83 0 8 776 556 350 60 24 chr4 25072161 25072793 -130557327 - ERVL-B4-int LTR ERVL -1156 4558 3862 8 776 3943 171 26 7 chr4 25073202 25073881 -130556239 - RLTR17 LTR ERVK 0 692 1 8 776 184 30 29 29 chr4 25074374 25074408 -130555712 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 776 417 39 0 0 chr4 25074784 25074835 -130555285 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 776 2757 244 66 22 chr4 25074835 25075567 -130554553 - Lx5 LINE L1 -19 7031 6268 8 776 11412 161 29 13 chr4 25076088 25078128 -130551992 - Lx5 LINE L1 -783 6267 4189 8 776 396 103 0 0 chr4 25078128 25078186 -130551934 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 776 11412 161 18 18 chr4 25078186 25078302 -130551818 - Lx5 LINE L1 -1689 4188 4069 8 776 837 79 0 0 chr4 25078302 25078416 -130551704 + (GA)n Simple_repeat Simple_repeat 1 114 0 8 776 11412 161 18 18 chr4 25078416 25078861 -130551259 - Lx5 LINE L1 -1809 4068 3628 8 776 822 256 59 25 chr4 25078866 25079190 -130550930 - Lx5 LINE L1 -6019 1067 733 8 776 3491 91 2 10 chr4 25079399 25079878 -130550242 - MT2C_Mm LTR ERVL 0 475 1 8 776 602 301 14 107 chr4 25079995 25080211 -130549909 - B4 SINE B4 -95 197 2 8 776 300 326 167 14 chr4 25081172 25081393 -130548727 - Kanga1c DNA Tc2 -434 295 41 9 776 318 338 65 44 chr4 25081462 25081710 -130548410 + MER20B DNA MER1_type 297 549 -234 9 776 281 226 105 133 chr4 25081829 25081972 -130548148 - B3 SINE B2 0 216 78 9 776 451 254 24 39 chr4 25082765 25082892 -130547228 + RMER20B LTR ERVK 1 125 -502 9 776 331 339 0 59 chr4 25084081 25084150 -130545970 + PB1 SINE Alu 14 78 -49 9 776 216 67 0 0 chr4 25084150 25084180 -130545940 + (TGG)n Simple_repeat Simple_repeat 3 32 0 9 776 331 339 0 59 chr4 25084180 25084229 -130545891 + PB1 SINE Alu 79 125 -2 9 776 243 278 28 0 chr4 25084258 25084330 -130545790 + GA-rich Low_complexity Low_complexity 3 76 0 9 776 246 211 0 0 chr4 25084539 25084596 -130545524 + (CAGA)n Simple_repeat Simple_repeat 1 57 0 9 776 180 111 0 0 chr4 25085335 25085362 -130544758 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 776 274 322 19 58 chr4 25085377 25085532 -130544588 - RSINE1 SINE B4 -12 153 5 9 776 433 219 213 1 chr4 25086043 25086194 -130543926 - Lx4B LINE L1 -8 7050 6877 1 776 21 0 0 0 chr4 25086450 25086471 -130543649 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 36207 14 2 7 chr4 25086586 25091782 -130538338 + L1Md_A LINE L1 422 5585 -298 1 776 8793 16 0 0 chr4 25091783 25092779 -130537341 + L1Md_A LINE L1 5587 6582 0 1 776 328 194 20 61 chr4 25093810 25093958 -130536162 + A-rich Low_complexity Low_complexity 3 144 0 1 776 468 281 39 64 chr4 25093965 25094121 -130535999 - RLTR40 LTR ERVK -13 804 653 1 776 2576 132 0 2 chr4 25094640 25095035 -130535085 - L1_Mus4 LINE L1 -4 6632 6239 1 776 7540 78 2 8 chr4 25095039 25096138 -130533982 + L1_Mus4 LINE L1 5544 6635 -1 1 776 296 209 38 27 chr4 25096145 25096262 -130533858 - RLTR40 LTR ERVK -662 155 1 1 776 1247 270 14 18 chr4 25096287 25096570 -130533550 - B4A SINE B4 -5 287 6 1 776 255 215 0 0 chr4 25097261 25097326 -130532794 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 776 1107 75 7 0 chr4 25097406 25097552 -130532568 - B1_Mus2 SINE Alu 0 147 1 1 776 504 257 0 9 chr4 25097824 25097934 -130532186 + B1F2 SINE Alu 41 149 0 1 776 21 0 0 0 chr4 25098220 25098241 -130531879 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 26 0 0 0 chr4 25098589 25098615 -130531505 + AT_rich Low_complexity Low_complexity 1 26 0 1 776 1250 162 40 36 chr4 25098875 25099150 -130530970 - RMER1C Other Other -1 1341 1066 1 776 975 125 0 0 chr4 25099152 25099304 -130530816 + L1_Mus1 LINE L1 6416 6567 0 1 776 6971 127 9 4 chr4 25099332 25101024 -130529096 + Lx LINE L1 4953 6652 -2 1 776 1753 291 60 11 chr4 25101039 25101609 -130528511 - RMER1C Other Other -325 1017 420 1 776 798 320 72 69 chr4 25101621 25102054 -130528066 - RMER1C Other Other -493 849 416 1 776 381 342 56 80 chr4 25102512 25102763 -130527357 - ORR1E LTR MaLR 0 359 115 1 776 279 342 12 72 chr4 25103078 25103245 -130526875 - RMER4A LTR ERVK -422 163 7 1 776 466 231 9 28 chr4 25103410 25103517 -130526603 + MTC LTR MaLR 2 106 -315 1 776 442 297 70 8 chr4 25103792 25103921 -130526199 - RSINE1 SINE B4 -14 151 15 1 776 302 302 132 13 chr4 25104008 25104159 -130525961 - L1MC4a LINE L1 -218 7664 7496 1 776 285 232 102 66 chr4 25104174 25104400 -130525720 - L1MC4a LINE L1 -827 7215 6982 1 776 516 32 0 0 chr4 25105030 25105092 -130525028 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 776 336 337 17 52 chr4 25105163 25105335 -130524785 + L1ME1 LINE L1 5992 6157 -22 1 776 365 242 87 79 chr4 25105534 25105763 -130524357 + L1MC5 LINE L1 7694 7924 -37 1 776 261 197 0 0 chr4 25106341 25106402 -130523718 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 776 351 0 0 0 chr4 25106761 25106800 -130523320 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1 776 180 310 117 33 chr4 25107548 25107668 -130522452 + MIR SINE MIR 48 177 -85 1 776 529 181 22 8 chr4 25107796 25107930 -130522190 + Lx9 LINE L1 7502 7637 -7 1 776 944 192 68 5 chr4 25107973 25108193 -130521927 + Lx9 LINE L1 6718 6951 -693 1 776 1391 135 22 4 chr4 25109068 25109299 -130520821 - ORR1A2 LTR MaLR 0 327 93 1 776 31886 26 1 0 chr4 25109459 25116506 -130513614 - L1Md_T LINE L1 -1 6584 1 1 776 757 150 15 8 chr4 25116506 25116640 -130513480 - ORR1A2 LTR MaLR -211 135 1 1 776 911 202 293 27 chr4 25116713 25117044 -130513076 - MTD LTR MaLR 0 419 1 1 776 312 275 86 14 chr4 25117587 25117727 -130512393 - MIRb SINE MIR -56 212 63 1 776 2089 201 141 10 chr4 25117735 25118353 -130511767 - Lx9 LINE L1 -1 7643 6945 1 776 1133 206 52 8 chr4 25118349 25118599 -130511521 + Lx9 LINE L1 6700 6960 -684 1 776 298 248 17 17 chr4 25118972 25119087 -130511033 - L1MB8 LINE L1 -1 6177 6063 1 776 823 216 138 0 chr4 25119214 25119395 -130510725 - B3 SINE B2 -10 206 1 1 776 5700 34 0 0 chr4 25119547 25120216 -130509904 - L1Md_T LINE L1 0 6582 5914 1 776 1679 27 81 0 chr4 25120216 25120438 -130509682 + L1Md_T LINE L1 5673 5912 -670 1 776 3767 188 81 77 chr4 25120841 25121739 -130508381 + RMER19B LTR ERVK 1 902 0 1 776 21 0 0 0 chr4 25122482 25122503 -130507617 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 318 287 74 51 chr4 25122658 25122834 -130507286 - B3A SINE B2 -18 180 1 1 776 21 36 0 0 chr4 25123350 25123378 -130506742 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 182 333 15 0 chr4 25124694 25124760 -130505360 - L3 LINE CR1 -144 4345 4279 1 776 346 299 0 0 chr4 25125121 25125198 -130504922 + ID4 SINE ID 7 83 0 1 776 22 0 0 0 chr4 25126102 25126124 -130503996 + AT_rich Low_complexity Low_complexity 1 22 0 1 776 777 266 20 14 chr4 25128318 25128530 -130501590 - B3A SINE B2 -1 215 9 1 776 2102 144 96 10 chr4 25128572 25128979 -130501141 + RMER10A LTR ERVL 1 442 0 1 776 1958 138 63 123 chr4 25129071 25129517 -130500603 + MTC LTR MaLR 1 419 -2 1 776 497 226 20 113 chr4 25129852 25130002 -130500118 + B1_Mur2 SINE Alu 2 137 -12 1 776 882 122 0 0 chr4 25130002 25130141 -130499979 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 1 776 1190 69 0 0 chr4 25130499 25130658 -130499462 + B2_Mm2 SINE B2 3 161 -34 1 776 387 0 0 0 chr4 25130658 25130701 -130499419 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1 776 899 257 137 66 chr4 25130952 25131603 -130498517 + Lx9 LINE L1 6947 7643 -1 1 776 528 221 162 16 chr4 25131774 25131988 -130498132 - L1MA8 LINE L1 -36 6276 6036 1 776 315 173 37 0 chr4 25133214 25133295 -130496825 + GA-rich Low_complexity Low_complexity 1 84 0 1 776 276 266 31 0 chr4 25135293 25135357 -130494763 - ID4_ SINE ID -3 80 15 1 776 474 18 0 0 chr4 25136127 25136182 -130493938 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 776 418 289 53 4 chr4 25136186 25136383 -130493737 - B4A SINE B4 -38 254 4 1 776 4000 60 7 34 chr4 25137095 25137632 -130492488 + L1_Mus1 LINE L1 6045 6567 0 1 776 183 114 0 0 chr4 25138234 25138269 -130491851 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 776 704 301 104 21 chr4 25138953 25139233 -130490887 + Lx9 LINE L1 7111 7395 -249 1 776 557 40 0 0 chr4 25139233 25139308 -130490812 - L1Md_T LINE L1 0 6582 6508 1 776 704 301 104 21 chr4 25139308 25139506 -130490614 + Lx9 LINE L1 7396 7629 -15 1 776 470 316 0 0 chr4 25139605 25139722 -130490398 + RSINE1 SINE B4 3 119 -46 1 776 3910 115 28 10 chr4 25139722 25140321 -130489799 + L1_Mus3 LINE L1 6027 6636 -2 1 776 378 0 0 0 chr4 25141184 25141226 -130488894 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 1 776 235 127 32 0 chr4 25141548 25141611 -130488509 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 776 703 200 14 29 chr4 25142147 25142286 -130487834 - B1_Mur4 SINE Alu -11 139 3 1 776 7210 136 32 35 chr4 25144371 25144891 -130485229 - L1_Mur2 LINE L1 -241 5636 5106 1 776 1557 132 47 22 chr4 25144891 25145169 -130484951 - Lx LINE L1 0 6654 6370 1 776 7210 136 32 35 chr4 25145169 25146039 -130484081 - L1_Mur2 LINE L1 -772 5105 4250 1 776 7921 143 30 15 chr4 25146037 25147452 -130482668 + Lx4B LINE L1 5606 7042 -16 1 776 261 0 0 0 chr4 25147452 25147481 -130482639 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1 776 195 42 0 0 chr4 25147484 25147508 -130482612 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 776 369 0 0 0 chr4 25147749 25147790 -130482330 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 776 1071 139 12 0 chr4 25147870 25148043 -130482077 - Lx4B LINE L1 -440 6618 6444 1 776 264 59 0 0 chr4 25148490 25148524 -130481596 + (T)n Simple_repeat Simple_repeat 1 34 0 1 776 324 270 11 11 chr4 25150885 25150975 -130479145 + Lx9 LINE L1 5890 5979 -1665 1 776 253 327 77 81 chr4 25151372 25151488 -130478632 + L1M4 LINE L1 4436 4554 -1592 1 776 378 0 0 0 chr4 25151488 25151530 -130478590 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 776 259 320 59 64 chr4 25151530 25151970 -130478150 + L1M4 LINE L1 4555 4984 -1159 1 776 523 29 0 14 chr4 25152126 25152195 -130477925 - L1Md_F3 LINE L1 -640 5944 5877 1 776 5388 34 3 5 chr4 25152195 25152842 -130477278 + L1Md_F3 LINE L1 5939 6584 0 1 776 924 177 0 0 chr4 25153041 25153216 -130476904 + GA-rich Low_complexity Low_complexity 4 178 0 1 776 663 78 0 0 chr4 25153219 25153309 -130476811 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 1 776 806 186 163 10 chr4 25154255 25154451 -130475669 + URR1A DNA MER1_type 1 226 0 1 776 384 77 0 0 chr4 25155617 25155669 -130474451 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1 776 3017 104 44 2 chr4 25155669 25156103 -130474017 - Lx4A LINE L1 -16 7042 6591 1 776 3826 133 42 16 chr4 25157937 25158603 -130471517 + RMER6A LTR ERVK 1 683 -73 1 776 4267 137 10 3 chr4 25158726 25159399 -130470721 + RLTR33 LTR ERVK 1 678 0 1 776 587 142 20 29 chr4 25159401 25159503 -130470617 + RMER6A LTR ERVK 656 756 0 1 776 3286 36 5 5 chr4 25161130 25161526 -130468594 + MTA_Mm LTR MaLR 1 396 0 1 776 8224 46 24 16 chr4 25161526 25161955 -130468165 + MTA_Mm-int LTR MaLR 1 425 -673 1 776 1833 30 21 41 chr4 25161955 25162198 -130467922 - L1Md_F3 LINE L1 0 6584 6347 1 776 8224 46 24 16 chr4 25162198 25162461 -130467659 + MTA_Mm-int LTR MaLR 426 685 -413 1 776 186 43 0 0 chr4 25162461 25162484 -130467636 + (CAG)n Simple_repeat Simple_repeat 2 24 0 1 776 8224 46 24 16 chr4 25162484 25162879 -130467241 + MTA_Mm-int LTR MaLR 686 1098 0 1 776 3005 42 45 5 chr4 25162879 25163260 -130466860 + MTA_Mm LTR MaLR 1 396 0 1 776 812 90 0 16 chr4 25163471 25163595 -130466525 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 1 776 538 207 83 0 chr4 25165375 25165496 -130464624 - B1_Mur1 SINE Alu -6 143 13 1 777 410 292 146 40 chr4 25165942 25166217 -130463903 + Cheshire DNA MER1_type 28 331 -2089 1 777 238 309 15 0 chr4 25166320 25166388 -130463732 + Cheshire DNA MER1_type 2352 2420 0 1 777 204 321 36 0 chr4 25167315 25167371 -130462749 + MER5A DNA MER1_type 14 71 -118 1 777 7097 97 20 8 chr4 25171269 25172296 -130457824 - L1_Mus3 LINE L1 0 6638 5599 1 777 3962 181 87 49 chr4 25172296 25173260 -130456860 + L1_Mur3 LINE L1 4605 5605 -275 1 777 1208 218 113 38 chr4 25173585 25173929 -130456191 - ORR1D2 LTR MaLR 0 370 1 1 777 23 0 0 0 chr4 25174777 25174800 -130455320 + AT_rich Low_complexity Low_complexity 1 23 0 1 777 1052 170 8 108 chr4 25175220 25175470 -130454650 - URR1B DNA MER1_type 0 225 1 1 777 583 229 100 0 chr4 25176186 25176326 -130453794 - B3 SINE B2 0 216 63 2 777 474 65 0 0 chr4 25176334 25176396 -130453724 + (CAA)n Simple_repeat Simple_repeat 1 62 0 2 777 28 0 0 0 chr4 25176452 25176480 -130453640 + AT_rich Low_complexity Low_complexity 1 28 0 2 777 30 27 0 0 chr4 25176532 25176569 -130453551 + AT_rich Low_complexity Low_complexity 1 37 0 2 777 201 74 0 0 chr4 25178303 25178330 -130451790 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 777 2339 61 0 0 chr4 25180713 25181006 -130449114 - L1Md_F2 LINE L1 -363 6219 5927 2 777 2597 78 0 30 chr4 25181009 25181378 -130448742 + L1Md_F2 LINE L1 6220 6577 -5 2 777 22 35 0 0 chr4 25182237 25182266 -130447854 + AT_rich Low_complexity Low_complexity 1 29 0 2 777 23 0 0 0 chr4 25183044 25183067 -130447053 + AT_rich Low_complexity Low_complexity 1 23 0 2 777 23 68 0 0 chr4 25183384 25183428 -130446692 + AT_rich Low_complexity Low_complexity 1 44 0 2 777 1279 262 95 117 chr4 25185009 25185632 -130444488 + RLTR18B LTR ERVK 3 611 -5 2 777 282 289 161 15 chr4 25185823 25185953 -130444167 - B1F1 SINE Alu 0 149 1 2 777 348 277 133 8 chr4 25185837 25185957 -130444163 - ID_B1 SINE B4 -12 212 78 2 777 404 304 103 49 chr4 25185987 25186191 -130443929 - Tigger6b DNA MER2_type -1223 374 160 2 777 798 232 102 0 chr4 25186823 25187000 -130443120 - B3 SINE B2 -19 197 3 2 777 1045 175 64 10 chr4 25188657 25188859 -130441261 + B3 SINE B2 1 213 -3 2 777 330 314 72 45 chr4 25188992 25189215 -130440905 - L1M2 LINE L1 -1218 4925 4697 2 777 459 95 0 0 chr4 25190199 25190273 -130439847 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 777 1201 34 7 0 chr4 25190690 25190836 -130439284 + B1_Mus2 SINE Alu 1 147 0 2 777 195 157 0 0 chr4 25190837 25190888 -130439232 + A-rich Low_complexity Low_complexity 1 51 0 2 777 5765 62 30 2 chr4 25190896 25191682 -130438438 - MusHAL1 LINE L1 -63 2649 1842 2 777 453 259 149 61 chr4 25191715 25191896 -130438224 + B3A SINE B2 1 197 -1 2 777 287 279 121 79 chr4 25191925 25192065 -130438055 - B1F2 SINE Alu 0 149 4 2 777 4153 129 28 5 chr4 25193553 25194206 -130435914 + Lx2B LINE L1 6330 6997 -3 2 777 1002 282 63 84 chr4 25194213 25194592 -130435528 + MTE2a LTR MaLR 3 373 -6 2 777 1758 156 52 3 chr4 25196491 25196800 -130433320 + Lx9 LINE L1 6876 7199 -445 2 777 625 177 92 0 chr4 25196820 25196950 -130433170 + Lx9 LINE L1 7257 7398 -246 2 777 468 0 0 0 chr4 25196950 25197002 -130433118 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 777 474 171 68 0 chr4 25197032 25197149 -130432971 + Lx9 LINE L1 7517 7641 -3 2 777 234 0 0 0 chr4 25197477 25197503 -130432617 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 2 777 274 217 56 42 chr4 25198135 25198207 -130431913 - MER2B DNA MER2_type -259 77 5 2 777 457 284 102 34 chr4 25198404 25198863 -130431257 - L1MB8 LINE L1 -1 6177 5678 2 777 489 307 122 4 chr4 25199094 25199349 -130430771 - B4A SINE B4 -6 286 2 2 777 347 305 186 56 chr4 25200475 25200928 -130429192 + L1MC4 LINE L1 6438 6958 -1084 2 777 503 339 62 48 chr4 25201035 25201634 -130428486 + L1MC4 LINE L1 7240 7846 -196 2 777 1049 126 6 6 chr4 25204050 25204226 -130425894 + ORR1D1 LTR MaLR 1 176 -198 2 777 401 145 0 0 chr4 25204234 25204296 -130425824 + ORR1D1 LTR MaLR 323 384 0 2 777 271 372 0 0 chr4 25204448 25204542 -130425578 - MIRb SINE MIR -162 106 13 2 777 275 300 78 0 chr4 25204749 25204839 -130425281 - MER20 DNA MER1_type -16 203 107 2 777 24 0 0 0 chr4 25205575 25205599 -130424521 + AT_rich Low_complexity Low_complexity 1 24 0 2 777 28 61 0 0 chr4 25205912 25205961 -130424159 + AT_rich Low_complexity Low_complexity 1 49 0 2 777 264 291 0 60 chr4 25206041 25206125 -130423995 + B1F2 SINE Alu 51 129 -20 2 777 393 39 0 0 chr4 25206129 25206180 -130423940 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 777 1346 143 28 20 chr4 25206181 25206430 -130423690 + ORR1A4 LTR MaLR 75 325 -4 2 777 697 146 7 26 chr4 25207273 25207428 -130422692 + (TA)n Simple_repeat Simple_repeat 1 152 0 2 777 423 0 0 0 chr4 25209391 25209438 -130420682 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2 777 488 332 83 14 chr4 25209719 25209936 -130420184 - B4A SINE B4 -58 234 3 2 777 369 0 0 0 chr4 25209953 25209994 -130420126 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 2 777 486 131 0 23 chr4 25210440 25210526 -130419594 + ORR1A1 LTR MaLR 1 84 -262 2 777 237 132 0 0 chr4 25210542 25210580 -130419540 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 777 9302 111 19 7 chr4 25210583 25211977 -130418143 - Lx2 LINE L1 0 6997 5587 2 777 733 135 0 0 chr4 25211976 25212080 -130418040 + Lx2 LINE L1 5491 5594 -289 2 777 1387 158 20 0 chr4 25212070 25212317 -130417803 - Lx2 LINE L1 -1200 4677 4426 2 777 4344 162 52 5 chr4 25212311 25213567 -130416553 + Lx2 LINE L1 4827 6997 0 2 777 1469 196 169 36 chr4 25213563 25213954 -130416166 + Lx6 LINE L1 6567 7009 -451 2 777 278 194 15 0 chr4 25213962 25214029 -130416091 + GA-rich Low_complexity Low_complexity 3 70 0 2 777 311 291 196 52 chr4 25214145 25214471 -130415649 - L3 LINE CR1 -5 4484 4112 2 777 3761 5 9 0 chr4 25214861 25215285 -130414835 - L1Md_A LINE L1 -1 6581 6154 2 777 406 296 77 0 chr4 25215330 25215499 -130414621 + MER99 DNA hAT? 60 241 -590 2 777 841 290 129 65 chr4 25215704 25216915 -130413205 - L1_Rod LINE L1 -13 5867 4674 2 777 2877 95 26 0 chr4 25216925 25217315 -130412805 - MTB LTR MaLR 0 400 1 2 777 1290 276 60 21 chr4 25217316 25217898 -130412222 - L1M2 LINE L1 -2189 3954 3350 2 777 327 49 0 0 chr4 25218048 25218089 -130412031 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 777 1833 300 13 17 chr4 25218108 25218708 -130411412 - Lx5 LINE L1 -27 7023 6452 2 777 983 164 5 5 chr4 25218783 25218973 -130411147 - Lx LINE L1 0 6654 6465 2 777 6571 147 15 1 chr4 25218976 25220065 -130410055 - L1_Mur2 LINE L1 -713 5164 4061 2 777 397 312 13 13 chr4 25220064 25220220 -130409900 - Lx5 LINE L1 -704 6756 6601 2 777 260 275 74 16 chr4 25220237 25220359 -130409761 - L1MD LINE L1 -2848 3298 3170 2 777 318 67 0 0 chr4 25220412 25220457 -130409663 + (T)n Simple_repeat Simple_repeat 1 45 0 2 777 645 304 69 48 chr4 25220624 25221087 -130409033 - L1_Rod LINE L1 -3257 2889 2400 2 777 602 277 62 7 chr4 25221087 25221272 -130408848 - B3 SINE B2 -1 197 1 2 777 4695 177 19 66 chr4 25221362 25222299 -130407821 + RMER19B LTR ERVK 3 895 -7 2 777 443 306 89 31 chr4 25222481 25222766 -130407354 - L1M2 LINE L1 -4190 2659 2345 2 777 450 0 0 0 chr4 25222766 25222816 -130407304 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 777 443 282 97 36 chr4 25222816 25223006 -130407114 - L1M2 LINE L1 -2202 2414 2159 2 777 1581 164 38 0 chr4 25223483 25223770 -130406350 - Lx3A LINE L1 -7 6974 6677 2 777 2851 74 40 27 chr4 25223866 25224270 -130405850 - RLTR10A LTR ERVK 0 411 3 2 777 1795 177 53 21 chr4 25224503 25224883 -130405237 - ORR1B1 LTR MaLR -2 392 1 2 777 5104 154 74 16 chr4 25225574 25225687 -130404433 - Lx2 LINE L1 0 6997 6886 2 777 222 37 0 0 chr4 25225687 25225714 -130404406 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 2 777 5104 154 74 16 chr4 25225714 25226572 -130403548 - Lx2 LINE L1 -112 6885 5972 2 777 404 262 190 58 chr4 25226690 25226864 -130403256 + B3A SINE B2 1 197 -1 2 777 1279 75 32 16 chr4 25227198 25227388 -130402732 - B2_Mm2 SINE B2 -1 194 2 2 777 5608 119 21 41 chr4 25227411 25228340 -130401780 - Lx3B LINE L1 -1 6972 6062 2 777 1232 265 101 11 chr4 25229356 25229703 -130400417 - MTD LTR MaLR -14 405 28 2 777 397 326 30 0 chr4 25229993 25230128 -130399992 - MER117 DNA MER1_type -53 144 6 2 777 466 323 41 68 chr4 25230591 25230857 -130399263 - MTD LTR MaLR -160 259 1 2 777 496 310 132 26 chr4 25230873 25231138 -130398982 - Charlie1b DNA MER1_type -230 293 1 2 777 1594 36 0 15 chr4 25231507 25231702 -130398418 + B2_Mm1t SINE B2 2 193 0 2 777 219 173 0 0 chr4 25231753 25231805 -130398315 + A-rich Low_complexity Low_complexity 1 52 0 2 777 374 191 113 9 chr4 25231812 25231918 -130398202 + L1MDa LINE L1 1245 1361 -5272 2 777 1328 193 222 0 chr4 25232152 25232458 -130397662 - ORR1D1 LTR MaLR 0 374 1 2 777 835 263 52 56 chr4 25232738 25233044 -130397076 + MLT1B LTR MaLR 3 307 -83 2 777 923 169 0 6 chr4 25233590 25233693 -130396427 + polypurine Low_complexity Low_complexity 3 105 0 2 777 1578 11 0 0 chr4 25233693 25233873 -130396247 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 777 923 169 0 6 chr4 25233873 25233947 -130396173 + polypurine Low_complexity Low_complexity 106 179 0 2 777 243 0 0 0 chr4 25233996 25234023 -130396097 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 777 203 136 45 0 chr4 25235383 25235427 -130394693 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 777 2080 216 94 19 chr4 25236308 25237031 -130393089 + Lx7 LINE L1 260 1036 -6692 2 777 1516 181 25 12 chr4 25237057 25237381 -130392739 + L1_Mur3 LINE L1 3565 3892 -1988 2 777 899 158 22 17 chr4 25237379 25237559 -130392561 + Lx7 LINE L1 2880 3060 -2820 2 777 3867 163 74 20 chr4 25237559 25237655 -130392465 + Lx7 LINE L1 4820 4911 -969 2 777 7690 50 0 5 chr4 25237655 25238622 -130391498 + L1Md_F2 LINE L1 5619 6580 -2 2 777 486 0 0 0 chr4 25238626 25238680 -130391440 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 777 3867 163 74 20 chr4 25238680 25239430 -130390690 + Lx7 LINE L1 4912 5719 -161 2 777 669 78 0 0 chr4 25239430 25239532 -130390588 + L1Md_F2 LINE L1 6469 6570 -12 2 777 225 170 0 0 chr4 25239534 25239581 -130390539 + Lx7 LINE L1 7260 7306 -390 2 777 353 328 65 20 chr4 25239593 25239792 -130390328 - L1MA6 LINE L1 -192 6108 5901 2 777 766 92 53 15 chr4 25239844 25239976 -130390144 + Lx LINE L1 6511 6647 -7 2 777 527 193 22 29 chr4 25240005 25240144 -130389976 + Lx7 LINE L1 5738 5875 -1821 2 777 1174 215 43 0 chr4 25240141 25240397 -130389723 + Lx7 LINE L1 6805 7071 -625 2 777 227 79 26 0 chr4 25240812 25240850 -130389270 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 2 777 642 238 0 0 chr4 25241609 25241769 -130388351 + GA-rich Low_complexity Low_complexity 1 160 0 2 777 207 343 18 92 chr4 25241945 25242054 -130388066 + L2b LINE L2 3272 3372 -3 2 777 269 384 22 0 chr4 25242656 25242794 -130387326 - B1F SINE Alu -1 148 8 2 777 353 291 115 17 chr4 25243082 25243303 -130386817 + MIRb SINE MIR 6 252 -10 2 777 537 339 143 16 chr4 25244070 25244328 -130385792 - B4A SINE B4 -1 291 1 3 777 32 43 0 0 chr4 25244328 25244374 -130385746 + AT_rich Low_complexity Low_complexity 1 46 0 3 777 335 311 29 22 chr4 25244515 25244653 -130385467 - Lx8 LINE L1 -143 7330 7192 3 777 586 318 45 67 chr4 25244661 25245018 -130385102 + Lx9 LINE L1 6961 7309 -335 3 777 276 266 63 11 chr4 25245014 25245109 -130385011 + Lx9 LINE L1 6603 6702 -942 3 777 1674 158 88 2 chr4 25245112 25245427 -130384693 - MTC LTR MaLR -8 413 46 3 777 6202 100 32 3 chr4 25245428 25246375 -130383745 + Lx LINE L1 5681 6654 0 3 777 726 186 0 0 chr4 25246440 25246564 -130383556 - MTC LTR MaLR -297 124 1 3 777 502 301 13 25 chr4 25246564 25246799 -130383321 + Lx9 LINE L1 6697 6928 -716 3 777 234 341 56 11 chr4 25246893 25247071 -130383049 - HAL1 LINE L1 -1638 869 684 3 777 396 0 0 0 chr4 25247178 25247222 -130382898 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 777 1572 330 39 83 chr4 25247377 25248312 -130381808 - Lx8 LINE L1 -181 7292 6374 3 777 693 229 96 0 chr4 25248312 25248478 -130381642 - B3A SINE B2 -15 183 2 3 777 1572 330 39 83 chr4 25248478 25248653 -130381467 - Lx8 LINE L1 -1100 6373 6231 3 777 1288 289 61 14 chr4 25248752 25249392 -130380728 + L1_Mur3 LINE L1 5208 5877 -3 3 777 831 73 32 16 chr4 25249403 25249518 -130380602 - ORR1A2 LTR MaLR 0 327 213 3 777 351 0 0 0 chr4 25249518 25249557 -130380563 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 777 21 0 0 0 chr4 25249673 25249694 -130380426 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 412 277 84 0 chr4 25250315 25250434 -130379686 + B1F2 SINE Alu 14 142 -7 3 777 330 271 71 0 chr4 25250437 25250592 -130379528 + L1M4b LINE L1 1609 1774 -5560 3 777 21 0 0 0 chr4 25250602 25250623 -130379497 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 4296 104 35 3 chr4 25250623 25251260 -130378860 - Lx LINE L1 0 6654 5998 3 777 7348 102 27 2 chr4 25251260 25252771 -130377349 - L1_Mus2 LINE L1 -4 6562 4992 3 777 843 114 23 0 chr4 25252769 25252901 -130377219 - Lx LINE L1 -643 6011 5877 3 777 2158 132 208 31 chr4 25253005 25253458 -130376662 + RMER16 LTR ERVK 1 533 0 3 777 300 310 0 26 chr4 25253667 25253783 -130376337 + MTD LTR MaLR 15 127 -292 3 777 3760 207 57 10 chr4 25253803 25254594 -130375526 - Lx5 LINE L1 -2 7048 6221 3 777 926 294 86 4 chr4 25254595 25254945 -130375175 + MTD LTR MaLR 35 419 0 3 777 261 323 13 35 chr4 25255020 25255248 -130374872 + L1M4b LINE L1 2349 2571 -4531 3 777 278 262 16 0 chr4 25255295 25255356 -130374764 - ID4_ SINE ID -17 66 5 3 777 970 193 17 6 chr4 25255853 25256030 -130374090 + RLTR17 LTR ERVK 190 368 -324 3 777 426 20 0 0 chr4 25256309 25256360 -130373760 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 777 1151 264 17 171 chr4 25256561 25257036 -130373084 + MTD LTR MaLR 18 419 0 3 777 3546 57 48 2 chr4 25258250 25258711 -130371409 - RLTR45 LTR ERVK 0 482 1 3 777 1769 27 0 39 chr4 25259751 25259985 -130370135 - L1Md_F2 LINE L1 0 6582 6358 3 777 1218 78 0 0 chr4 25260527 25260707 -130369413 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 777 1197 294 19 21 chr4 25261338 25261758 -130368362 + MTD LTR MaLR 1 419 0 3 777 2468 251 129 65 chr4 25261760 25262937 -130367183 + MTD-int LTR MaLR 5 1257 -1 3 777 1151 275 105 9 chr4 25262989 25263323 -130366797 - ORR1D2 LTR MaLR 0 370 5 3 777 1063 244 123 22 chr4 25263383 25263660 -130366460 + MTD LTR MaLR 115 419 0 3 777 768 323 75 28 chr4 25264030 25264493 -130365627 - RMER15 LTR ERVL 0 575 1 3 777 260 311 98 12 chr4 25265398 25265602 -130364518 - MIR SINE MIR -30 238 6 3 777 343 358 79 49 chr4 25266453 25266782 -130363338 - ORR1E LTR MaLR -20 339 1 3 777 2419 245 44 73 chr4 25266912 25267573 -130362547 + RLTR26 LTR ERVK 1 642 0 3 777 182 358 92 28 chr4 25267662 25267803 -130362317 - MIRb SINE MIR -114 154 5 3 777 212 0 36 0 chr4 25268004 25268032 -130362088 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 777 421 255 87 87 chr4 25268040 25268212 -130361908 - MLT1G3 LTR MaLR -2 593 422 3 777 412 345 135 31 chr4 25268452 25268778 -130361342 - L1ME1 LINE L1 -13 6166 5807 3 777 5014 135 12 8 chr4 25269045 25270330 -130359790 - Lx4A LINE L1 -612 6446 5148 3 777 4365 116 89 0 chr4 25270334 25270853 -130359267 + L1_Mur2 LINE L1 3617 4202 -1675 3 777 461 17 17 0 chr4 25270853 25270911 -130359209 + (TATAA)n Simple_repeat Simple_repeat 2 60 0 3 777 4365 116 89 0 chr4 25270911 25271140 -130358980 + L1_Mur2 LINE L1 4203 4431 -1446 3 777 24 0 0 0 chr4 25272662 25272686 -130357434 + AT_rich Low_complexity Low_complexity 1 24 0 3 777 191 267 76 22 chr4 25273917 25274009 -130356111 + MIR3 SINE MIR 107 203 -5 3 777 2096 286 128 15 chr4 25274491 25275314 -130354806 - Tigger1 DNA MER2_type -1439 979 64 3 777 546 283 27 27 chr4 25275366 25275515 -130354605 + B3A SINE B2 2 150 -48 3 777 2347 213 47 32 chr4 25275802 25276355 -130353765 + RLTR31_Mm LTR ERVK 1 561 0 3 777 4692 59 2 3 chr4 25277087 25277679 -130352441 - L1Md_F2 LINE L1 -3 6579 5989 3 777 1375 53 79 0 chr4 25277679 25277869 -130352251 + L1Md_F2 LINE L1 5695 5899 -683 3 777 402 281 104 18 chr4 25277941 25278104 -130352016 + Lx8 LINE L1 7156 7332 -141 3 777 816 11 0 0 chr4 25278156 25278249 -130351871 + (CAAAG)n Simple_repeat Simple_repeat 2 94 0 3 777 363 296 77 60 chr4 25278373 25278607 -130351513 + RMER2 LTR ERV1 330 567 0 3 777 22 70 0 0 chr4 25279144 25279187 -130350933 + AT_rich Low_complexity Low_complexity 1 43 0 3 777 408 326 181 1 chr4 25279434 25279682 -130350438 - MLT1E1A LTR MaLR -366 288 3 3 777 213 217 50 0 chr4 25279751 25279811 -130350309 + CT-rich Low_complexity Low_complexity 2 64 0 3 777 384 242 141 8 chr4 25279950 25280071 -130350049 - B1F SINE Alu -8 141 5 3 777 1253 25 6 6 chr4 25283189 25283348 -130346772 + L1Md_F3 LINE L1 6411 6569 -15 3 777 340 114 51 0 chr4 25283421 25283500 -130346620 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 3 777 34569 43 1 17 chr4 25284731 25289892 -130340228 + L1Md_A LINE L1 511 5586 -297 3 777 8277 42 0 1 chr4 25289892 25290889 -130339231 + L1Md_A LINE L1 5587 6582 0 3 777 24 0 0 0 chr4 25291260 25291284 -130338836 + AT_rich Low_complexity Low_complexity 1 24 0 3 777 691 162 7 7 chr4 25291934 25292077 -130338043 + GA-rich Low_complexity Low_complexity 2 144 0 3 777 239 333 15 0 chr4 25292082 25292148 -130337972 + ID4_ SINE ID 6 72 -11 3 777 552 347 83 21 chr4 25292198 25292584 -130337536 + L1MEg LINE L1 666 1075 -5009 3 777 523 332 94 18 chr4 25292722 25292946 -130337174 - MLT1A LTR MaLR -8 366 126 3 777 530 327 50 87 chr4 25293413 25293654 -130336466 + B4A SINE B4 1 232 -60 3 777 652 259 70 15 chr4 25294628 25294828 -130335292 + B3 SINE B2 3 213 -3 3 777 801 77 86 0 chr4 25296350 25296467 -130333653 + B1_Mus1 SINE Alu 1 127 -21 3 777 216 0 0 0 chr4 25296471 25296495 -130333625 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 778 934 168 76 122 chr4 25297016 25297106 -130333014 - URR1A DNA MER1_type 0 226 145 3 778 1132 68 7 7 chr4 25297106 25297253 -130332867 - B1_Mm SINE Alu 0 147 1 3 778 934 168 76 122 chr4 25297253 25297399 -130332721 - URR1A DNA MER1_type -82 144 1 3 778 201 312 129 0 chr4 25297782 25297875 -130332245 + MIR SINE MIR 66 170 -92 3 778 222 37 0 0 chr4 25298051 25298078 -130332042 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 3 778 405 0 0 0 chr4 25298149 25298194 -130331926 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 778 180 0 0 0 chr4 25298194 25298213 -130331907 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 778 853 256 38 66 chr4 25298391 25298986 -130331134 - Lx7 LINE L1 0 7696 7161 3 778 1499 200 77 3 chr4 25298986 25299322 -130330798 - RMER6C LTR ERVK 0 690 330 3 778 719 219 82 43 chr4 25299439 25299475 -130330645 - RMER6C LTR ERVK -313 377 343 3 778 1208 105 12 6 chr4 25299475 25299822 -130330298 + (TTTC)n Simple_repeat Simple_repeat 1 349 0 3 778 893 130 102 41 chr4 25299822 25300071 -130330049 - RMER6C LTR ERVK -348 342 2 3 778 5783 219 30 24 chr4 25300075 25301454 -130328666 - Lx7 LINE L1 -533 7163 5777 3 778 3338 68 0 0 chr4 25302043 25302498 -130327622 - L1_Mus3 LINE L1 -356 6282 5828 3 778 2112 98 17 55 chr4 25302498 25302826 -130327294 + L1_Mus3 LINE L1 6302 6622 -16 3 778 3461 25 2 0 chr4 25302826 25303221 -130326899 + MTA_Mm LTR MaLR 1 396 0 3 778 2112 98 17 55 chr4 25303221 25303238 -130326882 + L1_Mus3 LINE L1 6623 6634 -4 3 778 30 0 0 0 chr4 25303533 25303563 -130326557 + AT_rich Low_complexity Low_complexity 1 30 0 3 778 217 279 139 0 chr4 25303876 25303955 -130326165 + MER5A DNA MER1_type 45 134 -55 3 778 29691 24 0 1 chr4 25304177 25307862 -130322258 + L1Md_T LINE L1 1903 5585 -298 3 778 8458 36 0 0 chr4 25307863 25308859 -130321261 + L1Md_T LINE L1 5587 6582 0 3 778 460 319 17 33 chr4 25309017 25309229 -130320891 - Lx8 LINE L1 -1309 6387 6172 3 778 3449 266 83 16 chr4 25309261 25310659 -130319461 - Lx8 LINE L1 -451 5429 3939 3 778 380 261 141 16 chr4 25310678 25310927 -130319193 - L1M2 LINE L1 -2347 3796 3517 3 778 184 30 0 57 chr4 25310929 25310964 -130319156 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 778 1283 183 109 31 chr4 25311040 25311156 -130318964 - RMER1C Other Other -2 1340 1215 3 778 279 0 0 0 chr4 25311156 25311187 -130318933 + (ATG)n Simple_repeat Simple_repeat 3 33 0 3 778 1283 183 109 31 chr4 25311187 25311392 -130318728 - RMER1C Other Other -128 1214 994 3 778 225 347 72 77 chr4 25312280 25312320 -130317800 + RLTR25B LTR ERVK 849 891 -137 3 778 675 0 0 0 chr4 25312320 25312395 -130317725 + (GAGAA)n Simple_repeat Simple_repeat 5 79 0 3 778 225 347 72 77 chr4 25312395 25312535 -130317585 + RLTR25B LTR ERVK 892 1028 0 3 778 1877 266 32 36 chr4 25312539 25313128 -130316992 - RMER1C Other Other -366 976 250 3 778 1256 271 99 24 chr4 25313151 25313938 -130316182 - Lx8 LINE L1 -2615 3265 2420 3 778 258 286 39 0 chr4 25314792 25314869 -130315251 - MLT1J LTR MaLR -336 176 97 3 778 349 23 0 0 chr4 25315059 25315102 -130315018 - L1Md_T LINE L1 -292 6290 6248 3 778 2249 54 0 0 chr4 25315102 25315381 -130314739 + L1Md_A LINE L1 6304 6582 0 3 778 182 150 0 24 chr4 25316215 25316242 -130313878 + polypurine Low_complexity Low_complexity 1 27 0 3 778 1573 120 39 4 chr4 25316242 25316501 -130313619 + Lx LINE L1 6387 6654 0 3 778 182 150 0 24 chr4 25316501 25316514 -130313606 + polypurine Low_complexity Low_complexity 28 40 0 3 778 229 406 91 41 chr4 25317766 25317987 -130312133 + MLT1F1 LTR MaLR 91 322 -247 3 778 1305 46 6 0 chr4 25318448 25318659 -130311461 - L1Md_F3 LINE L1 0 6584 6385 3 778 3797 26 0 0 chr4 25318660 25319117 -130311003 + L1Md_F3 LINE L1 5920 6376 -208 3 778 259 206 79 0 chr4 25319688 25319751 -130310369 - L1_Mur3 LINE L1 -7605 107 40 3 778 327 333 163 48 chr4 25320463 25320923 -130309197 - HAL1 LINE L1 -834 1673 1161 4 778 1107 88 0 0 chr4 25320994 25321142 -130308978 - B1_Mus1 SINE Alu 0 148 1 4 778 493 63 0 0 chr4 25321211 25321274 -130308846 + ORR1A1-int LTR MaLR 969 1031 -761 4 778 5306 156 24 43 chr4 25321281 25322361 -130307759 - ORR1A2-int LTR MaLR -732 1060 1 4 778 2220 95 31 9 chr4 25322361 25322681 -130307439 - ORR1A2 LTR MaLR 0 327 1 4 778 457 242 33 20 chr4 25322763 25322915 -130307205 + L1MA9 LINE L1 4533 4686 -1457 4 778 1111 270 56 86 chr4 25323036 25323144 -130306976 + L1MA9 LINE L1 4676 4785 -1358 4 778 922 129 15 97 chr4 25323144 25323350 -130306770 + B2_Mm2 SINE B2 2 190 -5 4 778 1111 270 56 86 chr4 25323350 25323458 -130306662 + L1MA9 LINE L1 4786 4887 -1256 4 778 1176 69 0 0 chr4 25323458 25323603 -130306517 + B1_Mm SINE Alu 3 147 0 4 778 1111 275 118 47 chr4 25323603 25324654 -130305466 + L1MA9 LINE L1 4888 6015 -297 4 778 324 240 13 13 chr4 25324752 25324828 -130305292 + PB1D10 SINE Alu 31 106 -11 4 778 2793 239 89 55 chr4 25325028 25325940 -130304180 + RMER17B LTR ERVK 1 943 -15 4 778 373 328 8 24 chr4 25325941 25326066 -130304054 - RMER15 LTR ERVL -153 422 300 4 778 396 40 0 0 chr4 25326346 25326396 -130303724 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 778 485 270 141 33 chr4 25326462 25326646 -130303474 - B3 SINE B2 -12 204 1 4 778 27 0 0 0 chr4 25326804 25326831 -130303289 + AT_rich Low_complexity Low_complexity 1 27 0 4 778 2667 31 15 3 chr4 25327180 25327505 -130302615 - L1Md_F3 LINE L1 -1 6583 6255 4 778 313 246 78 24 chr4 25328597 25328738 -130301382 - MTC LTR MaLR -259 148 2 4 778 255 327 83 4 chr4 25328751 25329003 -130301117 - L1MC4 LINE L1 -512 7530 7259 4 778 561 83 187 16 chr4 25329135 25329214 -130300906 - L1Md_F2 LINE L1 0 6582 6483 4 778 189 74 0 0 chr4 25329214 25329241 -130300879 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 4 778 561 83 187 16 chr4 25329241 25329284 -130300836 - L1Md_F2 LINE L1 -100 6482 6440 4 778 1594 79 0 0 chr4 25329285 25329501 -130300619 + L1Md_F2 LINE L1 6016 6231 -351 4 778 325 250 61 55 chr4 25329533 25329698 -130300422 - L1MA6 LINE L1 -34 6266 6101 4 778 488 263 190 0 chr4 25329815 25330047 -130300073 - L1MC4 LINE L1 -987 7055 6780 4 778 605 244 16 8 chr4 25330146 25330274 -130299846 + MT2A LTR ERVL 1 129 -404 4 778 348 83 0 0 chr4 25330336 25330384 -130299736 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 778 2002 179 3 0 chr4 25330384 25330736 -130299384 + RLTR14 LTR ERV1 26 378 -4 4 778 563 282 112 22 chr4 25330735 25330967 -130299153 + MT2A LTR ERVL 349 601 0 4 778 294 273 0 0 chr4 25331292 25331358 -130298762 - RSINE1 SINE B4 -97 68 3 4 778 373 338 117 13 chr4 25331358 25331575 -130298545 - L1ME2 LINE L1 -39 6125 5899 4 778 213 39 0 0 chr4 25331575 25331601 -130298519 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 778 373 338 117 13 chr4 25331601 25331683 -130298437 - L1ME2 LINE L1 -266 5898 5796 4 778 192 77 0 0 chr4 25332188 25332214 -130297906 + (T)n Simple_repeat Simple_repeat 1 26 0 4 778 1864 67 16 12 chr4 25332252 25332509 -130297611 + L1_Mus1 LINE L1 6310 6567 0 4 778 3910 74 17 4 chr4 25332886 25333428 -130296692 + Lx3_Mus LINE L1 6217 6765 -244 4 778 556 251 73 51 chr4 25333559 25333807 -130296313 + LTRIS4 LTR ERV1 275 519 0 4 778 1424 73 138 0 chr4 25333807 25334025 -130296095 + Lx3_Mus LINE L1 6762 7009 0 4 778 204 40 0 0 chr4 25334069 25334094 -130296026 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 778 330 26 0 0 chr4 25335512 25335551 -130294569 + (CAGC)n Simple_repeat Simple_repeat 2 40 0 4 778 225 174 0 0 chr4 25336701 25336747 -130293373 + C-rich Low_complexity Low_complexity 1 46 0 4 778 3088 61 5 8 chr4 25337040 25337437 -130292683 - MTA_Mm LTR MaLR 0 396 1 4 778 1296 260 74 33 chr4 25338264 25338654 -130291466 - MTD LTR MaLR -13 406 1 4 778 26 0 0 0 chr4 25338958 25338984 -130291136 + AT_rich Low_complexity Low_complexity 1 26 0 4 778 205 327 85 51 chr4 25339054 25339231 -130290889 + MIR SINE MIR 5 187 -75 4 778 2864 259 76 23 chr4 25339444 25339554 -130290566 - RMER1C Other Other -2 1340 1199 4 778 240 35 0 0 chr4 25339554 25339583 -130290537 + (GGA)n Simple_repeat Simple_repeat 3 31 0 4 778 2864 259 76 23 chr4 25339583 25340343 -130289777 - RMER1C Other Other -144 1198 424 4 778 245 316 31 21 chr4 25340343 25340440 -130289680 - RMER1C Other Other -532 810 713 4 778 224 333 65 0 chr4 25341144 25341237 -130288883 - PB1D10 SINE Alu 0 117 19 4 778 189 312 29 81 chr4 25341451 25341587 -130288533 - MIRc SINE MIR -25 243 112 4 778 2122 106 19 30 chr4 25341829 25342198 -130287922 + Lx LINE L1 6266 6630 -24 4 778 31 82 0 0 chr4 25342198 25342271 -130287849 + AT_rich Low_complexity Low_complexity 1 73 0 4 778 1077 82 7 0 chr4 25342318 25342464 -130287656 + B1_Mus1 SINE Alu 1 147 -1 4 778 205 167 0 0 chr4 25342539 25342575 -130287545 + (CAA)n Simple_repeat Simple_repeat 1 36 0 4 778 2374 233 79 47 chr4 25343336 25344124 -130285996 + RLTR40 LTR ERVK 1 813 -4 4 778 874 127 15 7 chr4 25344245 25344258 -130285862 - B1_Mur4 SINE Alu 0 150 139 4 778 548 50 0 12 chr4 25344258 25344339 -130285781 + (TTTTG)n Simple_repeat Simple_repeat 1 80 0 4 778 919 91 0 0 chr4 25344339 25344460 -130285660 - B1_Mus1 SINE Alu -13 135 15 4 778 476 248 52 84 chr4 25344460 25344478 -130285642 - B4A SINE B4 -78 214 79 4 778 1244 102 21 0 chr4 25344716 25344902 -130285218 - B2_Mm1t SINE B2 -1 192 3 4 778 661 289 62 16 chr4 25345613 25345870 -130284250 + Lx8 LINE L1 6590 6858 -615 4 778 1280 141 0 0 chr4 25345867 25346066 -130284054 - L1VL2 LINE L1 -6071 264 66 4 778 424 201 131 97 chr4 25346173 25346349 -130283771 + ORR1B1 LTR MaLR 39 220 -174 4 778 508 221 29 0 chr4 25346335 25346439 -130283681 + B1_Mus1 SINE Alu 37 143 -5 4 778 1286 92 11 31 chr4 25346956 25347147 -130282973 + B2_Mm2 SINE B2 2 188 -7 4 778 868 284 166 38 chr4 25347169 25347622 -130282498 + Lx8 LINE L1 6842 7352 -121 4 778 417 295 163 16 chr4 25347999 25348244 -130281876 - B4A SINE B4 -10 282 2 4 778 612 198 27 0 chr4 25348244 25348355 -130281765 - PB1D7 SINE Alu -1 119 6 4 778 235 212 75 15 chr4 25348813 25348880 -130281240 - MLT1A1 LTR MaLR -1 407 337 4 778 231 88 0 0 chr4 25349113 25349147 -130280973 + (T)n Simple_repeat Simple_repeat 1 34 0 4 778 1088 58 0 0 chr4 25349147 25349286 -130280834 - B1_Mus1 SINE Alu 0 148 10 4 778 805 271 19 5 chr4 25349850 25350058 -130280062 + B3 SINE B2 1 211 -5 4 778 1105 240 23 49 chr4 25351408 25351715 -130278405 + MTD LTR MaLR 2 300 -119 4 778 363 130 0 0 chr4 25352365 25352442 -130277678 + (A)n Simple_repeat Simple_repeat 1 77 0 4 778 2747 208 71 13 chr4 25352454 25352662 -130277458 + Lx6 LINE L1 6535 6742 -718 4 778 910 54 47 0 chr4 25352662 25352810 -130277310 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 4 778 2747 209 83 16 chr4 25352810 25353288 -130276832 + Lx6 LINE L1 6743 7547 -149 4 778 270 0 0 0 chr4 25353534 25353564 -130276556 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 778 40 37 0 0 chr4 25353679 25353733 -130276387 + AT_rich Low_complexity Low_complexity 1 54 0 4 778 220 312 16 0 chr4 25353742 25353806 -130276314 + ID4_ SINE ID 5 69 -14 4 778 25 0 0 0 chr4 25353980 25354005 -130276115 + AT_rich Low_complexity Low_complexity 1 25 0 4 778 505 246 123 0 chr4 25354291 25354413 -130275707 + ORR1D2 LTR MaLR 1 137 -233 4 778 4478 228 46 28 chr4 25354421 25355472 -130274648 + ORR1D2-int LTR MaLR 285 1354 -16 4 778 697 269 14 19 chr4 25355472 25355543 -130274577 - URR1A DNA MER1_type 0 226 156 4 778 1222 48 0 0 chr4 25355543 25355690 -130274430 - B1_Mus2 SINE Alu 0 147 1 4 778 697 269 14 19 chr4 25355690 25355834 -130274286 - URR1A DNA MER1_type -71 155 13 4 778 1354 261 39 11 chr4 25355847 25356207 -130273913 + ORR1D2 LTR MaLR 1 370 0 4 778 559 298 30 5 chr4 25356352 25356551 -130273569 - Tigger5 DNA MER2_type -23 2383 2180 4 778 3531 137 27 5 chr4 25356584 25357185 -130272935 + Lx4B LINE L1 6363 6976 -82 4 778 1380 198 40 79 chr4 25357187 25357646 -130272474 - RMER17C LTR ERVK -517 441 16 4 778 2022 144 193 18 chr4 25357651 25358252 -130271868 - RMER17C-int LTR ERVK 0 3238 2533 4 778 680 169 28 0 chr4 25358250 25358392 -130271728 - RMER17C-int LTR ERVK -896 2342 2197 4 778 694 135 123 34 chr4 25358514 25358660 -130271460 - RMER17C-int LTR ERVK -1567 1671 1513 4 778 611 214 148 11 chr4 25359843 25360032 -130270088 - RMER17C-int LTR ERVK -3020 218 4 4 778 1499 177 28 96 chr4 25360037 25360474 -130269646 - RMER17C LTR ERVK -3 407 1 4 778 225 0 0 0 chr4 25360501 25360526 -130269594 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 778 342 138 0 0 chr4 25361257 25361315 -130268805 + (TCC)n Simple_repeat Simple_repeat 3 60 0 4 778 370 121 15 0 chr4 25361402 25361468 -130268652 - Lx3B LINE L1 -7 6969 6903 4 778 241 170 21 0 chr4 25361469 25361516 -130268604 - Lx3B LINE L1 -373 6600 6553 4 778 6316 61 14 5 chr4 25361515 25362378 -130267742 - L1_Mus1 LINE L1 0 6567 5697 4 778 4439 95 18 0 chr4 25362374 25363029 -130267091 + L1_Mus1 LINE L1 5073 5739 -144 4 778 3134 104 40 6 chr4 25363025 25363519 -130266601 - Lx3B LINE L1 -406 6567 6057 4 778 6117 148 47 27 chr4 25363639 25364720 -130265400 - RLTR25A LTR ERVK 0 1103 1 4 778 3765 208 62 4 chr4 25364889 25365220 -130264900 - Lx6 LINE L1 -3 7457 7126 4 778 801 97 22 0 chr4 25365220 25365354 -130264766 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 778 3765 208 62 4 chr4 25365354 25365809 -130264311 - Lx6 LINE L1 -335 7125 6625 4 778 771 108 0 0 chr4 25365826 25365946 -130264174 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 778 2741 201 78 48 chr4 25365951 25366982 -130263138 - Lx6 LINE L1 -970 6490 5407 4 778 987 117 14 0 chr4 25366982 25367127 -130262993 - B1_Mus1 SINE Alu 0 148 2 4 778 777 22 0 0 chr4 25367129 25367220 -130262900 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 4 778 2672 169 53 65 chr4 25367220 25367420 -130262700 - Lx6 LINE L1 -474 5406 5207 4 778 448 145 0 0 chr4 25367421 25367497 -130262623 + L1_Mur3 LINE L1 3897 3972 -1908 4 778 1415 276 78 10 chr4 25367494 25368037 -130262083 + L1_Mur3 LINE L1 48 905 -6807 4 778 594 302 18 18 chr4 25368040 25368259 -130261861 - L1_Mur3 LINE L1 -7489 223 5 4 778 867 322 26 15 chr4 25368294 25368751 -130261369 - L1_Mur3 LINE L1 -7201 511 50 4 778 591 53 0 0 chr4 25369180 25369255 -130260865 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 778 30 0 0 0 chr4 25369262 25369292 -130260828 + AT_rich Low_complexity Low_complexity 1 30 0 4 778 1084 304 82 26 chr4 25369302 25369690 -130260430 + MTD LTR MaLR 1 410 -9 4 778 470 295 22 25 chr4 25369690 25369847 -130260273 + MTD-int LTR MaLR 1 155 -1354 4 778 341 212 24 0 chr4 25369865 25369950 -130260170 - Lx9 LINE L1 -789 6855 6769 4 778 1123 211 55 47 chr4 25369951 25370225 -130259895 - ORR1C2 LTR MaLR -2 382 107 4 778 189 0 0 0 chr4 25370247 25370268 -130259852 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 778 23 0 0 0 chr4 25371999 25372022 -130258098 + AT_rich Low_complexity Low_complexity 1 23 0 4 778 858 145 82 0 chr4 25372163 25372322 -130257798 - URR1A DNA MER1_type 0 226 55 4 778 398 282 31 52 chr4 25372322 25372351 -130257769 + CYRA11_Mm Unknown Y-chromosome 171 354 -263 5 778 2915 121 25 90 chr4 25372374 25372929 -130257191 + MURVY-LTR LTR ERV1 1 519 0 5 778 2774 154 95 2 chr4 25373131 25373625 -130256495 - RMER4B LTR ERVK -10 575 36 5 778 6767 127 68 19 chr4 25373630 25373895 -130256225 - Lx2B LINE L1 -13 6987 6717 5 778 558 0 0 0 chr4 25373895 25373957 -130256163 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 778 1097 77 0 0 chr4 25373957 25374100 -130256020 - B1_Mm SINE Alu -3 144 2 5 778 6767 127 68 19 chr4 25374100 25374965 -130255155 - Lx2B LINE L1 -284 6716 5802 5 778 244 111 0 0 chr4 25375060 25375096 -130255024 - L1M2 LINE L1 -2343 3800 3765 5 778 301 366 34 79 chr4 25375281 25375548 -130254572 - L2 LINE L2 -1220 2199 1945 5 778 252 317 17 0 chr4 25375729 25375789 -130254331 + LTR82B Low_complexity ERVL 452 512 -318 5 778 226 320 13 13 chr4 25375799 25375875 -130254245 + B4A SINE B4 6 81 -211 5 778 244 182 0 0 chr4 25376018 25376062 -130254058 + ORR1D2-int LTR MaLR 292 335 -1035 5 778 2602 254 96 47 chr4 25376082 25376941 -130253179 + RMER1C Other Other 442 1342 0 5 778 1182 301 79 36 chr4 25377350 25377818 -130252302 + ORR1D2-int LTR MaLR 341 828 -542 5 778 3289 181 60 26 chr4 25377818 25378546 -130251574 - Lx5 LINE L1 -341 6709 5957 5 778 828 183 39 21 chr4 25378596 25378780 -130251340 + ORR1D2 LTR MaLR 201 417 -2 5 778 4125 176 40 54 chr4 25378933 25379843 -130250277 + RMER13B LTR ERVK 1 897 -11 5 778 396 0 0 0 chr4 25379899 25379943 -130250177 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 778 456 19 0 0 chr4 25379943 25379995 -130250125 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 778 596 321 72 76 chr4 25380334 25380642 -130249478 - B4 SINE B4 0 292 2 5 778 525 221 66 46 chr4 25380680 25380832 -130249288 - RLTR40 LTR ERVK -642 175 21 5 778 396 0 0 0 chr4 25380913 25380957 -130249163 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 778 21 57 0 0 chr4 25381381 25381416 -130248704 + AT_rich Low_complexity Low_complexity 1 35 0 5 778 382 361 7 15 chr4 25382244 25382379 -130247741 - ID_B1 SINE B4 -1 223 90 5 778 589 15 0 0 chr4 25383331 25383399 -130246721 + L1Md_F2 LINE L1 5519 5586 -297 5 778 8199 36 3 4 chr4 25383399 25384394 -130245726 + L1Md_F2 LINE L1 5587 6580 -2 5 778 2289 156 6 122 chr4 25384426 25384951 -130245169 - RMER4A LTR ERVK 0 466 3 5 778 459 113 0 0 chr4 25385645 25385716 -130244404 + (CATA)n Simple_repeat Simple_repeat 2 72 0 5 778 2214 118 19 11 chr4 25386279 25386638 -130243482 + RLTR9A LTR ERVK 7 368 0 5 778 357 320 67 20 chr4 25386684 25386834 -130243286 - RMER15 LTR ERVL 0 575 419 5 778 423 0 0 0 chr4 25386874 25386921 -130243199 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 778 837 305 53 10 chr4 25388475 25388776 -130241344 - Lx9 LINE L1 -964 6680 6367 5 778 332 235 40 16 chr4 25389213 25389324 -130240796 + L1MC4a LINE L1 6740 6867 -1128 5 778 976 58 22 0 chr4 25389324 25389463 -130240657 + (CTAAA)n Simple_repeat Simple_repeat 2 143 0 5 778 377 289 52 49 chr4 25389463 25389800 -130240320 + L1MC4a LINE L1 6868 7202 -680 5 778 275 347 57 16 chr4 25389880 25390003 -130240117 + MLT1F1 LTR MaLR 7 134 -435 5 778 315 306 83 52 chr4 25390103 25390296 -130239824 + L1MC4a LINE L1 7525 7723 -272 5 778 364 309 111 40 chr4 25390355 25390554 -130239566 + MER58A DNA MER1_type 3 215 -9 5 778 270 344 79 94 chr4 25391079 25391409 -130238711 - ORR1D2 LTR MaLR -2 368 44 5 778 352 311 19 19 chr4 25391736 25391844 -130238276 + PB1D10 SINE Alu 5 112 -5 5 778 227 330 110 0 chr4 25392867 25392967 -130237153 - ID_B1 SINE B4 -26 198 88 5 778 209 57 29 0 chr4 25393434 25393469 -130236651 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 5 778 1172 124 16 21 chr4 25394804 25394993 -130235127 - B2_Mm2 SINE B2 -6 189 2 5 778 3037 278 103 72 chr4 25395040 25395323 -130234797 - MTD-int LTR MaLR 0 1258 919 5 778 1647 226 45 5 chr4 25395323 25395724 -130234396 - MTD LTR MaLR -2 417 1 5 778 3037 278 103 72 chr4 25395724 25396660 -130233460 - MTD-int LTR MaLR -340 918 1 5 778 1220 270 145 0 chr4 25396701 25397038 -130233082 - MTD LTR MaLR -24 395 10 5 778 3120 195 58 1 chr4 25397058 25397284 -130232836 + L1_Mur3 LINE L1 629 864 -6864 5 778 225 94 0 0 chr4 25397284 25397316 -130232804 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 778 10610 176 61 18 chr4 25397316 25398475 -130231645 + L1_Mur3 LINE L1 865 2057 -3823 5 778 213 39 0 0 chr4 25398475 25398501 -130231619 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 778 10610 169 62 25 chr4 25398501 25399420 -130230700 + L1_Mur3 LINE L1 2058 3051 -2829 5 778 687 35 0 0 chr4 25399420 25399506 -130230614 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 5 778 10610 169 62 25 chr4 25399506 25400271 -130229849 + L1_Mur3 LINE L1 3052 3831 -2049 5 778 323 322 59 108 chr4 25400290 25400458 -130229662 - RLTR11A2 LTR ERVK -24 503 358 5 778 2908 86 30 5 chr4 25400458 25400855 -130229265 - MTB_Mm LTR MaLR 0 407 1 5 778 323 322 59 108 chr4 25400855 25401093 -130229027 - RLTR11A2 LTR ERVK -170 357 117 5 778 1742 161 42 3 chr4 25401201 25401562 -130228558 + L1_Mur3 LINE L1 3827 4201 -1679 5 778 450 264 33 60 chr4 25401562 25401741 -130228379 + MT2A LTR ERVL 1 161 -314 5 778 419 306 0 0 chr4 25401741 25401852 -130228268 + PB1D7 SINE Alu 1 111 -9 5 778 888 253 234 13 chr4 25401852 25402175 -130227945 + MT2A LTR ERVL 84 453 -80 5 778 1059 263 61 0 chr4 25402194 25402506 -130227614 + Lx7 LINE L1 7024 7354 -342 5 778 1023 70 34 20 chr4 25402535 25402681 -130227439 - B1_Mus1 SINE Alu 0 148 1 5 778 29 28 0 0 chr4 25402699 25402735 -130227385 + AT_rich Low_complexity Low_complexity 1 36 0 5 778 441 198 20 10 chr4 25402738 25402840 -130227280 + Lx7 LINE L1 7358 7460 -236 5 778 1177 205 8 15 chr4 25402850 25403106 -130227014 - RLTR20B3 LTR ERVK -45 532 276 5 778 423 236 9 35 chr4 25403098 25403212 -130226908 + RLTR20B3 LTR ERVK 251 361 -216 5 778 520 140 10 70 chr4 25403214 25403314 -130226806 - RLTR20B3 LTR ERVK -443 117 24 5 778 577 272 49 9 chr4 25403331 25403557 -130226563 + Lx7 LINE L1 7459 7693 -3 5 778 770 313 90 15 chr4 25403582 25404036 -130226084 - L1MC LINE L1 -1292 4854 4367 5 778 369 333 0 0 chr4 25404122 25404221 -130225899 - ID_B1 SINE B4 -114 110 12 5 778 237 285 244 0 chr4 25405491 25405614 -130224506 + RSINE1 SINE B4 4 156 -9 5 778 1996 128 15 59 chr4 25405904 25406245 -130223875 + ORR1A3 LTR MaLR 1 326 0 5 778 3490 47 69 0 chr4 25406321 25406770 -130223350 - L1Md_F3 LINE L1 -13 6571 6092 5 778 356 340 72 10 chr4 25406935 25407128 -130222992 + MIR SINE MIR 9 213 -49 5 778 9220 80 28 14 chr4 25407173 25409089 -130221031 - Lx3_Mus LINE L1 -5 7004 5067 5 778 30 0 0 0 chr4 25409518 25409548 -130220572 + AT_rich Low_complexity Low_complexity 1 30 0 5 778 385 66 16 16 chr4 25409673 25409735 -130220385 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 778 379 288 133 74 chr4 25409842 25410232 -130219888 - RMER10A LTR ERVL -18 424 12 5 778 1095 238 9 0 chr4 25410362 25410585 -130219535 - ORR1D2 LTR MaLR 0 370 146 5 778 432 0 0 0 chr4 25411114 25411162 -130218958 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 778 514 276 44 22 chr4 25411162 25411299 -130218821 - RSINE1 SINE B4 -24 141 2 5 778 1136 284 31 0 chr4 25411711 25412003 -130218117 + RMER1C Other Other 676 976 -366 5 778 1557 186 60 9 chr4 25412310 25412646 -130217474 + RMER1C Other Other 990 1342 0 5 778 549 331 52 99 chr4 25412709 25413245 -130216875 + RLTR40 LTR ERVK 82 592 -225 5 778 244 228 0 0 chr4 25413441 25413498 -130216622 - RMER4A LTR ERVK -384 82 26 5 778 239 0 32 0 chr4 25414267 25414298 -130215822 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 778 361 304 58 29 chr4 25414315 25414488 -130215632 + L1M2 LINE L1 3371 3548 -2595 5 778 2668 115 20 40 chr4 25414494 25415006 -130215114 + RLTR1D LTR ERV1 1 605 0 5 778 1119 201 27 53 chr4 25415010 25415310 -130214810 + Lx6 LINE L1 7169 7460 0 5 778 335 268 41 0 chr4 25415504 25415601 -130214519 - ID_B1 SINE B4 0 224 124 5 778 254 386 43 7 chr4 25415949 25416090 -130214030 - LTR33A_ LTR ERVL -368 163 18 5 778 464 337 50 39 chr4 25416153 25416412 -130213708 - L2a LINE L2 0 3426 3165 5 778 22 35 0 0 chr4 25417219 25417248 -130212872 + AT_rich Low_complexity Low_complexity 1 29 0 5 778 7379 192 65 18 chr4 25418116 25420018 -130210102 + Lx7 LINE L1 3927 5921 -1775 5 778 3169 56 5 0 chr4 25420018 25420410 -130209710 + MTA_Mm LTR MaLR 1 394 -2 5 778 1707 224 57 36 chr4 25420410 25420613 -130209507 + Lx7 LINE L1 5922 6122 -1574 5 778 1472 190 12 0 chr4 25420613 25420866 -130209254 + MTC LTR MaLR 53 308 -113 5 778 465 284 38 14 chr4 25420900 25421137 -130208983 + L1M2 LINE L1 4444 4730 -1413 5 778 11902 25 7 0 chr4 25421146 25423290 -130206830 - L1Md_T LINE L1 -3 6579 4427 5 97 36861 44 3 13 chr4 25423338 25429478 -130200642 - L1Md_T LINE L1 0 6582 504 5 779 638 315 77 48 chr4 25429482 25430108 -130200012 + L1M2 LINE L1 4721 5364 -779 5 779 250 235 86 0 chr4 25430495 25430576 -130199544 + L1_Mur3 LINE L1 5353 5440 -440 5 779 1799 125 81 142 chr4 25430576 25431006 -130199114 + RLTR23 LTR ERV1 1 404 -26 5 779 1635 301 70 25 chr4 25431035 25431643 -130198477 + Lx8 LINE L1 5407 6057 -1416 5 779 1763 113 109 64 chr4 25431643 25431956 -130198164 - ORR1A2 LTR MaLR 0 327 1 5 779 1635 324 72 37 chr4 25431956 25432675 -130197445 + Lx8 LINE L1 6058 6805 -668 5 779 33 43 0 0 chr4 25432675 25432722 -130197398 + AT_rich Low_complexity Low_complexity 1 47 0 5 779 385 298 11 0 chr4 25432791 25432885 -130197235 - B3A SINE B2 -103 95 1 5 779 1013 324 46 15 chr4 25432889 25433299 -130196821 + Lx8 LINE L1 6800 7222 -251 5 779 3350 35 2 2 chr4 25434928 25435324 -130194796 + MTA_Mm LTR MaLR 1 396 0 5 779 7845 75 18 5 chr4 25435324 25436408 -130193712 + MTA_Mm-int LTR MaLR 1 1098 0 5 779 3076 52 26 0 chr4 25436408 25436794 -130193326 + MTA_Mm LTR MaLR 1 396 0 5 779 464 107 0 0 chr4 25437706 25437781 -130192339 - Lx2 LINE L1 0 6997 6923 5 779 2005 255 230 11 chr4 25438628 25439681 -130190439 - RMER1A Other Other 0 1030 1 5 779 440 284 261 10 chr4 25439683 25439886 -130190234 - RMER1A Other Other -776 254 1 5 779 1141 222 139 21 chr4 25439856 25440188 -130189932 - RMER1B Other Other -651 415 45 5 779 3424 199 127 13 chr4 25440775 25441836 -130188284 - Lx5 LINE L1 -6 7044 5864 5 779 361 232 64 47 chr4 25441842 25442014 -130188106 - RCHARR1 DNA MER1_type -6 968 794 5 779 1999 206 26 11 chr4 25442254 25442720 -130187400 + Lx6 LINE L1 5674 6146 -1314 5 779 343 233 0 0 chr4 25442722 25442795 -130187325 + Lx6 LINE L1 7260 7332 -128 5 779 1730 144 114 45 chr4 25442800 25443134 -130186986 - RMER16 LTR ERVK 0 533 177 5 779 6600 67 9 6 chr4 25443147 25444006 -130186114 - L1_Mus1 LINE L1 -1 6566 5705 5 779 367 276 17 25 chr4 25444029 25444148 -130185972 - RMER16 LTR ERVK -410 123 6 5 779 25171 91 54 26 chr4 25444153 25448080 -130182040 - RMER16-int LTR ERVK 0 5406 1566 5 779 324 61 0 0 chr4 25448091 25448140 -130181980 - L1_Mus1 LINE L1 0 6567 6519 5 779 1099 192 20 124 chr4 25448191 25448489 -130181631 - RMER16-int LTR ERVK -4951 2455 2189 5 779 259 307 0 0 chr4 25448532 25448607 -130181513 - RMER16-int LTR ERVK -1825 1489 1415 5 779 10274 97 24 16 chr4 25448725 25450248 -130179872 - RMER16-int LTR ERVK -3869 1537 2 5 779 2070 144 95 40 chr4 25450249 25450648 -130179472 - RMER16 LTR ERVK 0 533 113 5 779 623 245 14 0 chr4 25450937 25451080 -130179040 + MTD LTR MaLR 1 145 -274 5 779 783 32 0 0 chr4 25452560 25452654 -130177466 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 779 22 35 0 0 chr4 25452747 25452776 -130177344 + AT_rich Low_complexity Low_complexity 1 29 0 6 779 21 36 0 0 chr4 25453138 25453166 -130176954 + AT_rich Low_complexity Low_complexity 1 28 0 6 779 780 269 67 30 chr4 25453788 25454087 -130176033 - MER44A DNA MER2_type -18 321 12 6 779 24 32 0 0 chr4 25454317 25454348 -130175772 + AT_rich Low_complexity Low_complexity 1 31 0 6 779 423 0 0 0 chr4 25454440 25454487 -130175633 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 779 35 0 0 0 chr4 25454972 25455007 -130175113 + AT_rich Low_complexity Low_complexity 1 35 0 6 779 21 36 0 0 chr4 25455238 25455266 -130174854 + AT_rich Low_complexity Low_complexity 1 28 0 6 779 17902 81 12 3 chr4 25455349 25458535 -130171585 + L1_Mus2 LINE L1 3351 6566 0 6 779 184 77 25 25 chr4 25458660 25458700 -130171420 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 779 1032 90 14 0 chr4 25458700 25458844 -130171276 - B1_Mus2 SINE Alu -1 146 1 6 779 882 187 0 5 chr4 25459632 25459844 -130170276 + CT-rich Low_complexity Low_complexity 1 210 0 6 779 633 216 6 51 chr4 25459860 25460016 -130170104 - B1_Mur2 SINE Alu 0 149 1 6 779 404 219 208 8 chr4 25460802 25460922 -130169198 - B1_Mur1 SINE Alu -1 148 5 6 779 504 68 0 0 chr4 25461308 25461381 -130168739 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 779 434 332 108 19 chr4 25461389 25461696 -130168424 - Lx8 LINE L1 -205 7439 7078 6 779 491 313 138 0 chr4 25461737 25461954 -130168166 - RMER15-int LTR ERVL -269 4730 4484 6 779 591 282 215 4 chr4 25461985 25462213 -130167907 - Lx8 LINE L1 -1009 6464 6189 6 779 875 247 0 6 chr4 25462470 25462645 -130167475 - Lx6 LINE L1 -368 7092 6919 6 779 696 204 72 7 chr4 25462647 25462800 -130167320 - ORR1C1 LTR MaLR 0 378 216 6 779 2029 270 29 14 chr4 25462807 25463430 -130166690 - Lx7 LINE L1 -1245 6451 5820 6 779 194 364 69 28 chr4 25463885 25464029 -130166091 + L2 LINE L2 2779 2928 -491 6 779 7657 83 1 3 chr4 25464276 25465983 -130164137 - L1_Mus2 LINE L1 0 6566 4863 6 779 1545 129 66 25 chr4 25466802 25466839 -130163281 + L1Md_F2 LINE L1 5553 5589 -294 6 779 7721 69 1 2 chr4 25466839 25467830 -130162290 + L1Md_F2 LINE L1 5591 6580 -2 6 779 2600 79 17 6 chr4 25467830 25468237 -130161883 + L1Md_F2 LINE L1 5590 6011 -571 6 779 181 204 66 115 chr4 25468586 25468647 -130161473 + L4 LINE RTE 1073 1130 -899 6 779 488 59 15 0 chr4 25468736 25468804 -130161316 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 6 779 26 0 0 0 chr4 25469187 25469213 -130160907 + AT_rich Low_complexity Low_complexity 1 26 0 6 779 4813 151 17 24 chr4 25469697 25470795 -130159325 - L1Md_A LINE L1 -4428 1455 367 6 779 18894 89 10 1 chr4 25470794 25473479 -130156641 - L1Md_Gf LINE L1 -749 5137 2429 6 779 2494 219 85 14 chr4 25473476 25474171 -130155949 - L1Md_Gf LINE L1 -5597 925 182 6 779 272 250 0 0 chr4 25474162 25474218 -130155902 - L1Md_Gf LINE L1 -6393 226 171 6 779 392 328 116 69 chr4 25474222 25474645 -130155475 + Charlie7 DNA MER1_type 1742 2184 -428 6 779 690 184 78 33 chr4 25474946 25475126 -130154994 - RMER12 LTR ERVK 0 1322 1135 6 779 1738 165 25 15 chr4 25475140 25475467 -130154653 - RMER12 LTR ERVK -419 903 574 6 779 794 270 26 17 chr4 25475756 25475986 -130154134 - Lx7 LINE L1 -427 7269 7038 6 779 468 319 0 0 chr4 25475987 25476122 -130153998 + Lx7 LINE L1 6895 7029 -667 6 779 218 233 0 0 chr4 25476787 25476830 -130153290 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 779 184 100 0 48 chr4 25476856 25476898 -130153222 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 6 779 950 264 50 8 chr4 25476920 25477161 -130152959 - MTE2b-int LTR MaLR -1322 258 8 6 779 669 332 96 36 chr4 25477165 25477521 -130152599 - MTE2b LTR MaLR -2 377 1 6 779 24 77 0 0 chr4 25478467 25478519 -130151601 + AT_rich Low_complexity Low_complexity 1 52 0 6 779 890 94 79 0 chr4 25478555 25478682 -130151438 + B1_Mus1 SINE Alu 2 138 -10 6 779 249 0 23 47 chr4 25478682 25478725 -130151395 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 779 220 165 0 76 chr4 25478742 25478834 -130151286 + A-rich Low_complexity Low_complexity 1 85 0 6 779 405 103 0 0 chr4 25478842 25478910 -130151210 + (A)n Simple_repeat Simple_repeat 1 68 0 6 779 319 226 7 14 chr4 25479093 25479232 -130150888 + (CATA)n Simple_repeat Simple_repeat 1 138 0 6 779 299 346 45 80 chr4 25479497 25479698 -130150422 - B3 SINE B2 -4 194 1 6 779 1030 284 130 44 chr4 25480367 25481261 -130148859 + L1M2 LINE L1 4033 5003 -1140 6 779 491 267 0 9 chr4 25481267 25481373 -130148747 + B1_Mus2 SINE Alu 1 105 -42 6 779 340 315 69 32 chr4 25481374 25481805 -130148315 + L1M2 LINE L1 5077 5477 -400 6 779 450 0 0 0 chr4 25481808 25481858 -130148262 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 779 28 29 0 0 chr4 25481900 25481935 -130148185 + AT_rich Low_complexity Low_complexity 1 35 0 6 779 1959 260 37 2 chr4 25481946 25482435 -130147685 - Lx5 LINE L1 -57 6993 6488 6 779 994 272 67 27 chr4 25482438 25482736 -130147384 + MTD LTR MaLR 108 417 -2 6 779 24 67 0 0 chr4 25482858 25482903 -130147217 + AT_rich Low_complexity Low_complexity 1 45 0 6 779 3257 126 45 0 chr4 25482903 25483396 -130146724 - Lx2A1 LINE L1 -3 7005 6491 6 779 725 332 60 32 chr4 25483396 25483710 -130146410 - ORR1E LTR MaLR -36 323 1 6 779 289 336 9 46 chr4 25483710 25483796 -130146324 - ORR1E-int LTR MaLR -54 1526 1445 6 779 5967 108 45 13 chr4 25483801 25484714 -130145406 - Lx LINE L1 0 6654 5713 6 779 1439 335 68 22 chr4 25484751 25485536 -130144584 - ORR1E-int LTR MaLR -132 1448 576 6 779 963 273 93 104 chr4 25485570 25485691 -130144429 - Lx9 LINE L1 -5 7639 7515 6 779 276 30 0 0 chr4 25485691 25485724 -130144396 + (CATA)n Simple_repeat Simple_repeat 4 36 0 6 779 963 273 93 104 chr4 25485724 25485841 -130144279 - Lx9 LINE L1 -130 7514 7360 6 779 243 0 0 0 chr4 25485841 25485868 -130144252 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 779 963 273 93 104 chr4 25485868 25485902 -130144218 - Lx9 LINE L1 -285 7359 7351 6 779 1132 68 0 0 chr4 25485902 25486048 -130144072 - B1_Mus2 SINE Alu 0 147 2 6 779 963 273 93 104 chr4 25486048 25486313 -130143807 - Lx9 LINE L1 -294 7350 7107 6 779 3196 226 7 27 chr4 25486409 25487274 -130142846 + L1_Mur3 LINE L1 4918 5738 -142 6 779 5325 151 24 30 chr4 25487282 25488317 -130141803 + L1Md_T LINE L1 177 1205 -5411 6 779 36369 32 0 0 chr4 25488323 25492740 -130137380 + L1Md_T LINE L1 1170 5586 -297 6 779 8064 52 0 0 chr4 25492740 25493736 -130136384 + L1Md_T LINE L1 5587 6582 0 6 779 780 226 12 6 chr4 25493807 25493967 -130136153 - U1 snRNA snRNA -2 163 3 6 779 5639 226 32 20 chr4 25494029 25495272 -130134848 + Lx6 LINE L1 5781 7030 -430 6 779 625 92 0 0 chr4 25495351 25495438 -130134682 - B2_Mm2 SINE B2 -107 88 2 6 779 17597 33 2 13 chr4 25495507 25498297 -130131823 + L1Md_A LINE L1 620 3369 -2514 6 779 3356 42 2 0 chr4 25498362 25498772 -130131348 + L1Md_A LINE L1 6172 6582 0 6 779 1376 256 30 24 chr4 25498772 25499141 -130130979 + Lx6 LINE L1 7080 7450 -10 6 779 705 282 0 0 chr4 25499281 25499423 -130130697 + RSINE1 SINE B4 3 144 -21 6 779 218 356 98 54 chr4 25499423 25499465 -130130655 + B3A SINE B2 2 193 -5 6 779 458 0 35 0 chr4 25500120 25500177 -130129943 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 779 200 263 142 50 chr4 25500889 25501009 -130129111 + MIRb SINE MIR 15 145 -123 2 779 41165 6 0 0 chr4 25501571 25507938 -130122182 - L1Md_A LINE L1 0 6582 215 3 779 470 370 136 20 chr4 25507959 25508377 -130121743 + MLT1F LTR MaLR 68 546 -2 4 779 242 312 80 0 chr4 25508842 25508954 -130121166 - L1MA5 LINE L1 -24 6276 6156 5 779 1042 286 58 70 chr4 25508970 25510046 -130120074 - L1MA5 LINE L1 -501 5799 4730 5 779 32831 95 9 10 chr4 25510527 25516708 -130113412 - L1_Mus1 LINE L1 0 6567 387 6 779 1447 190 34 4 chr4 25517515 25517779 -130112341 + Lx5 LINE L1 6627 6898 -152 7 779 274 267 0 9 chr4 25517791 25517897 -130112223 - Lx9 LINE L1 -10 7634 7530 8 779 540 30 0 0 chr4 25519634 25519700 -130110420 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 779 22 0 0 0 chr4 25519972 25519994 -130110126 + AT_rich Low_complexity Low_complexity 1 22 0 1 779 501 17 0 0 chr4 25520038 25520096 -130110024 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 779 396 0 0 0 chr4 25520239 25520283 -130109837 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 779 25 31 0 0 chr4 25521268 25521300 -130108820 + AT_rich Low_complexity Low_complexity 1 32 0 1 779 198 71 0 0 chr4 25521319 25521347 -130108773 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 779 21 0 0 0 chr4 25521641 25521662 -130108458 + AT_rich Low_complexity Low_complexity 1 21 0 1 779 597 137 0 0 chr4 25522054 25522171 -130107949 + (TC)n Simple_repeat Simple_repeat 1 117 0 1 779 315 0 0 0 chr4 25522171 25522206 -130107914 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 779 263 201 30 12 chr4 25522265 25522431 -130107689 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 779 301 120 11 46 chr4 25522408 25522495 -130107625 + (GTGTG)n Simple_repeat Simple_repeat 2 85 0 1 779 189 74 0 0 chr4 25522510 25522537 -130107583 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 779 567 148 0 0 chr4 25523799 25523934 -130106186 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 779 298 233 47 0 chr4 25523949 25524078 -130106042 + (CAGAGA)n Simple_repeat Simple_repeat 1 134 0 2 779 3983 230 67 20 chr4 25524462 25525820 -130104300 + Lx6 LINE L1 5587 7039 -421 2 779 1386 172 0 22 chr4 25525825 25526056 -130104064 - MTC LTR MaLR 0 421 196 2 779 234 255 0 0 chr4 25526148 25526242 -130103878 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 779 1256 144 9 19 chr4 25526388 25526600 -130103520 - MTC LTR MaLR -211 210 1 2 779 1103 293 90 18 chr4 25526607 25526961 -130103159 + Lx6 LINE L1 7044 7430 -30 2 779 1553 60 0 0 chr4 25526961 25527162 -130102958 + L1_Mus1 LINE L1 6367 6567 0 2 779 1103 293 90 18 chr4 25527162 25527196 -130102924 + Lx6 LINE L1 7431 7460 0 2 779 271 322 47 55 chr4 25527221 25527349 -130102771 + RSINE1 SINE B4 35 161 -4 2 779 192 40 0 0 chr4 25527356 25527381 -130102739 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 779 2595 257 55 14 chr4 25527868 25528594 -130101526 - RMER1C Other Other 0 1342 587 2 779 228 326 31 47 chr4 25528637 25528830 -130101290 - L1M5 LINE L1 -2614 3532 3343 2 779 9887 164 4 10 chr4 25529124 25530933 -130099187 - L1_Mur2 LINE L1 -808 5069 3271 3 779 3274 150 25 7 chr4 25530930 25531502 -130098618 + L1_Mur2 LINE L1 5072 5653 -224 3 779 30 45 0 0 chr4 25531533 25531577 -130098543 + AT_rich Low_complexity Low_complexity 1 44 0 3 779 3846 9 0 0 chr4 25531609 25532042 -130098078 - L1Md_A LINE L1 0 6582 6150 3 779 27 49 0 0 chr4 25532222 25532263 -130097857 + AT_rich Low_complexity Low_complexity 1 41 0 3 779 279 333 140 12 chr4 25532560 25532724 -130097396 + Lx8 LINE L1 7101 7285 -188 3 779 2681 102 18 10 chr4 25534101 25534498 -130095622 - MTB LTR MaLR 0 400 1 3 779 218 351 26 26 chr4 25534572 25534648 -130095472 - ID4_ SINE ID -3 80 5 3 779 948 63 0 0 chr4 25535198 25535325 -130094795 - B1_Mm SINE Alu -20 127 1 3 779 182 163 21 85 chr4 25539094 25539141 -130090979 - MIRc SINE MIR -116 152 109 3 779 22 56 0 0 chr4 25540145 25540181 -130089939 + AT_rich Low_complexity Low_complexity 1 36 0 3 779 244 78 39 19 chr4 25541866 25541918 -130088202 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 4 779 195 229 21 0 chr4 25545793 25545841 -130084279 - L2a LINE L2 -4 3422 3374 4 779 21 0 0 0 chr4 25546098 25546119 -130084001 + AT_rich Low_complexity Low_complexity 1 21 0 4 779 2257 173 97 14 chr4 25548665 25549105 -130081015 + Lx4B LINE L1 6533 6995 -63 4 779 270 0 0 0 chr4 25549105 25549135 -130080985 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 779 2257 173 97 14 chr4 25549135 25549180 -130080940 + Lx4B LINE L1 6996 7058 0 4 779 1077 67 0 0 chr4 25549274 25549408 -130080712 + B1_Mus2 SINE Alu 2 135 -12 4 779 531 0 0 0 chr4 25549408 25549467 -130080653 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 4 779 201 244 35 35 chr4 25549612 25549697 -130080423 + A-rich Low_complexity Low_complexity 5 89 0 4 779 333 286 115 44 chr4 25550735 25550918 -130079202 - MIR SINE MIR 0 262 67 4 779 681 101 0 0 chr4 25551368 25551467 -130078653 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 779 526 203 13 0 chr4 25552977 25553130 -130076990 + CT-rich Low_complexity Low_complexity 1 155 0 5 779 270 0 0 0 chr4 25554963 25554993 -130075127 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 779 1157 173 14 0 chr4 25555200 25555236 -130074884 - Lx2 LINE L1 0 6997 6959 5 779 1993 191 48 82 chr4 25555236 25555698 -130074422 - RLTR41 LTR ERV1 0 446 1 5 779 1157 173 14 0 chr4 25555698 25555881 -130074239 - Lx2 LINE L1 -39 6958 6776 5 779 994 107 73 0 chr4 25555881 25556031 -130074089 - Lx2 LINE L1 -354 6643 6483 5 779 292 206 68 0 chr4 25556206 25556279 -130073841 - L1MA6 LINE L1 -119 6181 6104 5 779 238 309 35 23 chr4 25556607 25556693 -130073427 + LTR48 LTR ERV1 67 153 -634 5 779 213 39 0 0 chr4 25557773 25557799 -130072321 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 5 779 313 339 41 57 chr4 25557866 25557988 -130072132 - PB1 SINE Alu -2 125 6 5 97 21 0 0 0 chr4 25559030 25559051 -130071069 + AT_rich Low_complexity Low_complexity 1 21 0 5 780 3394 25 2 20 chr4 25559523 25559926 -130070194 + MTA_Mm LTR MaLR 1 396 0 5 780 231 170 0 0 chr4 25560126 25560173 -130069947 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 780 201 314 0 0 chr4 25560179 25560230 -130069890 + CT-rich Low_complexity Low_complexity 4 54 0 6 780 332 343 40 0 chr4 25560231 25560330 -130069790 - PB1D10 SINE Alu -8 109 7 6 780 689 325 71 34 chr4 25560363 25560685 -130069435 + LTR80A LTR ERVL 10 343 -240 6 780 468 306 37 53 chr4 25560840 25561030 -130069090 - RMER30 DNA MER1_type -2 200 14 6 780 431 249 34 131 chr4 25561086 25561354 -130068766 - L1_Rod LINE L1 -3447 2400 2159 6 780 331 239 28 0 chr4 25561354 25561425 -130068695 - B3A SINE B2 -125 73 1 6 780 802 248 172 35 chr4 25561511 25562228 -130067892 - L1_Rod LINE L1 -4161 1719 926 6 780 23 33 0 0 chr4 25562587 25562617 -130067503 + AT_rich Low_complexity Low_complexity 1 30 0 6 780 227 219 68 14 chr4 25563004 25563078 -130067042 + MLT1B LTR MaLR 70 147 -243 6 780 203 277 82 24 chr4 25563134 25563219 -130066901 + MIRb SINE MIR 164 253 -15 6 780 7498 57 0 6 chr4 25564830 25565888 -130064232 - L1Md_F2 LINE L1 0 6582 5532 7 780 3229 48 8 2 chr4 25566957 25567351 -130062769 + MTA_Mm LTR MaLR 1 396 0 7 780 387 0 0 0 chr4 25567404 25567447 -130062673 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 780 414 0 0 0 chr4 25568296 25568342 -130061778 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 780 404 294 52 0 chr4 25568611 25568747 -130061373 + B1F1 SINE Alu 5 147 -2 7 780 563 283 141 24 chr4 25568866 25569163 -130060957 - MTD LTR MaLR -83 336 5 7 780 880 298 60 56 chr4 25569556 25570022 -130060098 + Lx8 LINE L1 6640 7107 -366 7 780 200 210 16 31 chr4 25570842 25570906 -130059214 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 780 430 316 8 0 chr4 25571798 25571915 -130058205 + B4A SINE B4 173 290 -2 7 780 29 0 0 0 chr4 25571967 25571996 -130058124 + AT_rich Low_complexity Low_complexity 1 29 0 7 780 309 331 84 0 chr4 25572091 25572233 -130057887 - RMER15 LTR ERVL 0 575 422 8 780 596 297 58 45 chr4 25572220 25572459 -130057661 - ORR1D2 LTR MaLR -120 254 7 8 780 504 351 57 6 chr4 25572459 25572791 -130057329 - RMER15-int LTR ERVL -490 4509 4161 8 780 225 239 0 0 chr4 25572920 25572966 -130057154 - RMER15 LTR ERVL -156 419 374 8 780 713 95 16 23 chr4 25573346 25573463 -130056657 + Lx3A LINE L1 6851 6969 -12 8 780 288 0 0 0 chr4 25573463 25573495 -130056625 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 8 780 713 95 16 23 chr4 25573495 25573506 -130056614 + Lx3A LINE L1 6970 6978 -3 8 780 1396 199 43 0 chr4 25574459 25574736 -130055384 + RLTR14-int LTR ERV1 4538 4826 -491 8 780 243 0 0 0 chr4 25574757 25574784 -130055336 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 780 1174 253 55 10 chr4 25574802 25575094 -130055026 + MTD LTR MaLR 113 417 -2 8 780 275 289 8 2 chr4 25575098 25575194 -130054926 + MTD-int LTR MaLR 2 102 -1156 8 780 1720 278 120 37 chr4 25575239 25576016 -130054104 + MTD-int LTR MaLR 416 1256 -2 8 780 518 0 16 0 chr4 25576046 25576108 -130054012 + (CTA)n Simple_repeat Simple_repeat 1 63 0 8 780 1525 265 41 10 chr4 25576108 25576501 -130053619 + MTD LTR MaLR 15 419 0 8 780 313 212 15 15 chr4 25576860 25576927 -130053193 - MTE2b LTR MaLR 0 379 313 8 780 665 319 26 36 chr4 25576928 25577120 -130053000 + B3 SINE B2 1 190 -26 9 780 750 311 77 7 chr4 25577139 25577411 -130052709 - MTE2b LTR MaLR -88 291 1 8 780 192 135 0 0 chr4 25577581 25577618 -130052502 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 780 1147 95 78 86 chr4 25577734 25577977 -130052143 + Lx3_Mus LINE L1 6764 7004 -5 9 780 227 274 0 0 chr4 25578712 25578763 -130051357 + Charlie12 DNA MER1_type 2271 2321 -552 9 780 229 48 62 46 chr4 25578764 25578829 -130051291 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 9 780 942 224 115 54 chr4 25579128 25579477 -130050643 - ORR1D1 LTR MaLR -4 370 1 9 780 242 125 87 72 chr4 25579478 25579547 -130050573 + L1_Rod LINE L1 1035 1104 -6504 9 780 354 284 85 6 chr4 25579564 25579811 -130050309 + L1_Rod LINE L1 1146 1413 -4434 9 780 52 30 0 0 chr4 25579825 25579891 -130050229 + AT_rich Low_complexity Low_complexity 1 66 0 9 780 244 229 0 0 chr4 25579910 25579958 -130050162 + L1_Rod LINE L1 2437 2484 -3363 9 780 594 364 75 6 chr4 25580128 25580490 -130049630 + L1MC LINE L1 2237 2623 -3523 9 780 697 290 157 4 chr4 25580945 25581225 -130048895 + MER2 DNA MER2_type 23 345 0 9 780 2628 193 17 50 chr4 25581433 25582012 -130048108 + RLTR20B2 LTR ERVK 1 560 0 1 780 22 80 0 0 chr4 25584608 25584658 -130045462 + AT_rich Low_complexity Low_complexity 1 50 0 1 780 377 265 61 127 chr4 25585014 25585227 -130044893 - L1M2 LINE L1 -744 5402 5200 1 780 239 258 221 16 chr4 25585275 25585397 -130044723 - L1_Mur3 LINE L1 -690 5190 5044 1 780 756 308 47 47 chr4 25585676 25586041 -130044079 + Lx7 LINE L1 6254 6618 -1078 1 780 745 193 113 30 chr4 25586049 25586279 -130043841 - RMER1C Other Other -67 1275 1027 1 780 247 287 70 0 chr4 25586415 25586530 -130043590 + L1M1 LINE L1 5754 5876 -424 1 780 450 96 0 0 chr4 25586538 25586611 -130043509 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 780 231 245 57 0 chr4 25587805 25587858 -130042262 + RMER21A LTR ERV1 625 680 -267 1 780 425 284 126 19 chr4 25588236 25588451 -130041669 + RodERV21-int LTR ERV1 682 919 -4072 1 780 378 0 0 0 chr4 25588940 25588982 -130041138 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 780 598 300 16 72 chr4 25589138 25589501 -130040619 + MYSERV6-int LTR ERVK 8347 8689 -270 1 780 423 0 0 0 chr4 25589618 25589665 -130040455 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 780 588 227 9 76 chr4 25589911 25590121 -130039999 + RLTR19-int LTR ERVK 3526 3721 -2416 1 780 481 207 0 0 chr4 25590136 25590223 -130039897 - LSU-rRNA_Hsa rRNA rRNA -747 4288 4202 1 780 4392 106 24 68 chr4 25590387 25591146 -130038974 + Lx3B LINE L1 6248 6972 -1 1 780 249 33 0 0 chr4 25591153 25591183 -130038937 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1 780 562 260 28 70 chr4 25591184 25591399 -130038721 + RMER17C-int LTR ERVK 2627 2832 -406 1 780 393 276 99 7 chr4 25591429 25591571 -130038549 + RMER17C-int LTR ERVK 2943 3097 -141 1 780 712 224 93 35 chr4 25591813 25592156 -130037964 + Lx6 LINE L1 932 1294 -6434 1 780 3463 149 26 49 chr4 25592175 25592782 -130037338 - MT2B LTR ERVL -3 598 6 1 780 325 191 58 35 chr4 25592823 25592910 -130037210 - ORR1A3-int LTR MaLR -1323 640 552 1 780 3403 147 83 11 chr4 25592910 25593548 -130036572 - MERVL_2A-int LTR ERVL -144 5617 4934 1 780 373 242 10 0 chr4 25593581 25593680 -130036440 + Lx6 LINE L1 5823 5922 -1538 1 780 1110 55 7 40 chr4 25593680 25593831 -130036289 + B1_Mus2 SINE Alu 1 146 -1 1 780 189 0 0 0 chr4 25593832 25593853 -130036267 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 780 750 78 0 0 chr4 25593856 25593958 -130036162 + (GAAA)n Simple_repeat Simple_repeat 2 103 0 1 780 2678 260 42 19 chr4 25593960 25594730 -130035390 + Lx6 LINE L1 5915 6701 -759 1 780 990 201 190 3 chr4 25594936 25595226 -130034894 + Lx6 LINE L1 6705 7048 -412 1 780 724 232 50 25 chr4 25595247 25595446 -130034674 + Lx6 LINE L1 7141 7344 -116 1 780 414 0 0 0 chr4 25595535 25595581 -130034539 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 780 333 0 0 0 chr4 25595581 25595617 -130034503 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 780 1106 56 21 0 chr4 25596316 25596460 -130033660 - B1_Mus1 SINE Alu -1 147 1 1 780 24 0 0 0 chr4 25596560 25596584 -130033536 + AT_rich Low_complexity Low_complexity 1 24 0 1 780 6910 24 0 8 chr4 25597597 25598245 -130031875 + RLTR13B2 LTR ERVK 1 648 -174 1 780 3141 21 2 106 chr4 25598245 25598680 -130031440 + RLTR10 LTR ERVK 1 390 0 1 780 6910 24 0 8 chr4 25598680 25598860 -130031260 + RLTR13B2 LTR ERVK 649 822 0 1 780 279 0 0 0 chr4 25601099 25601130 -130028990 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 780 185 326 103 21 chr4 25601154 25601251 -130028869 - MIR3 SINE MIR -46 162 58 1 780 207 0 0 0 chr4 25601421 25601444 -130028676 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 780 1575 196 67 14 chr4 25601713 25602070 -130028050 + ORR1C1 LTR MaLR 2 377 -1 1 780 29 45 0 43 chr4 25602826 25602895 -130027225 + AT_rich Low_complexity Low_complexity 1 66 0 1 780 2627 49 62 0 chr4 25603141 25603465 -130026655 - ORR1A1 LTR MaLR 0 346 3 1 780 1221 83 0 0 chr4 25603795 25603975 -130026145 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 780 275 256 12 35 chr4 25604466 25604551 -130025569 + GA-rich Low_complexity Low_complexity 2 84 0 1 780 1291 84 6 11 chr4 25604707 25604887 -130025233 + B2_Mm2 SINE B2 3 181 -14 1 780 297 0 0 0 chr4 25605042 25605075 -130025045 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1 780 987 149 0 0 chr4 25605075 25605242 -130024878 + (TC)n Simple_repeat Simple_repeat 2 169 0 1 780 5555 70 14 5 chr4 25605253 25605996 -130024124 - L1_Mus3 LINE L1 -6 6632 5884 1 780 2949 102 23 2 chr4 25605996 25606436 -130023684 + L1_Mus3 LINE L1 5434 5882 -1 1 780 226 275 55 9 chr4 25607091 25607201 -130022919 + Lx5 LINE L1 6924 7038 -12 1 780 297 0 0 0 chr4 25607249 25607282 -130022838 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 780 370 313 4 7 chr4 25607980 25608071 -130022049 + RSINE1 SINE B4 6 98 -67 1 780 1545 183 65 85 chr4 25609510 25609863 -130020257 + ORR1B1 LTR MaLR 39 384 -10 1 780 456 314 57 7 chr4 25610257 25610398 -130019722 + B3A SINE B2 1 148 -50 1 780 579 112 0 0 chr4 25610398 25610496 -130019624 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 780 26 0 0 0 chr4 25610498 25610524 -130019596 + AT_rich Low_complexity Low_complexity 1 26 0 1 780 649 319 19 33 chr4 25611790 25612004 -130018116 + B3 SINE B2 6 216 0 1 780 328 293 83 34 chr4 25612129 25612334 -130017786 + Lx8 LINE L1 614 828 -6900 1 780 280 314 51 0 chr4 25612491 25612609 -130017511 + Lx8 LINE L1 708 831 -6897 1 780 1798 311 119 30 chr4 25612853 25613430 -130016690 + Lx8 LINE L1 6259 6897 -576 1 780 2540 96 17 27 chr4 25613430 25613837 -130016283 - L1_Mus3 LINE L1 0 6638 6236 1 780 1798 311 119 30 chr4 25613837 25614212 -130015908 + Lx8 LINE L1 6898 7295 -178 1 780 416 370 41 45 chr4 25614676 25614942 -130015178 - RMER15 LTR ERVL -37 538 274 1 780 351 0 0 0 chr4 25615436 25615475 -130014645 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 780 24 32 0 0 chr4 25616169 25616200 -130013920 + AT_rich Low_complexity Low_complexity 1 31 0 1 780 26 0 0 0 chr4 25616544 25616570 -130013550 + AT_rich Low_complexity Low_complexity 1 26 0 1 780 191 289 124 6 chr4 25616684 25616807 -130013313 + MIR SINE MIR 82 221 -47 1 780 25 31 0 0 chr4 25616905 25616937 -130013183 + AT_rich Low_complexity Low_complexity 1 32 0 1 780 23 0 0 0 chr4 25617117 25617140 -130012980 + AT_rich Low_complexity Low_complexity 1 23 0 1 780 3260 76 47 13 chr4 25617243 25617711 -130012409 + L1_Mus3 LINE L1 6152 6635 -3 1 780 660 48 0 0 chr4 25618314 25618398 -130011722 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 780 414 0 0 0 chr4 25619639 25619685 -130010435 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 780 198 0 0 0 chr4 25619688 25619710 -130010410 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 780 309 291 87 58 chr4 25621219 25621565 -130008555 - L1M2 LINE L1 -3363 2780 2425 1 780 421 156 52 0 chr4 25621848 25621944 -130008176 - URR1A DNA MER1_type -43 183 83 1 780 337 95 32 0 chr4 25621944 25622007 -130008113 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1 780 599 190 183 0 chr4 25622114 25622256 -130007864 - URR1A DNA MER1_type -58 168 1 1 780 250 359 38 84 chr4 25622262 25622499 -130007621 - MT2A LTR ERVL -296 237 12 1 780 638 245 7 0 chr4 25622877 25623016 -130007104 - B1_Mus2 SINE Alu -6 141 2 1 780 358 229 84 0 chr4 25623329 25623412 -130006708 - B3 SINE B2 -123 93 4 1 780 237 271 69 78 chr4 25623607 25623723 -130006397 + LTR41B LTR ERVL 91 205 -553 1 780 186 103 0 0 chr4 25623978 25624007 -130006113 + (A)n Simple_repeat Simple_repeat 1 29 0 1 780 370 111 41 14 chr4 25624522 25624595 -130005525 + GA-rich Low_complexity Low_complexity 3 77 0 1 780 339 279 0 23 chr4 25624838 25624926 -130005194 + PB1D10 SINE Alu 26 111 -6 1 780 261 371 101 65 chr4 25625907 25626244 -130003876 - LTR85b LTR Gypsy? -66 718 370 1 780 228 100 0 0 chr4 25626452 25626492 -130003628 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 780 1017 317 49 28 chr4 25626709 25627303 -130002817 - Lx8 LINE L1 -1406 6067 5432 1 780 180 0 0 0 chr4 25627305 25627325 -130002795 + (T)n Simple_repeat Simple_repeat 1 20 0 1 780 274 143 0 31 chr4 25627363 25627428 -130002692 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 780 21 36 0 0 chr4 25627463 25627491 -130002629 + AT_rich Low_complexity Low_complexity 1 28 0 1 780 377 252 58 6 chr4 25627492 25627648 -130002472 - Lx9 LINE L1 -2 7642 7479 1 780 450 0 0 0 chr4 25627648 25627698 -130002422 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 780 1363 346 61 29 chr4 25627727 25628557 -130001563 + Lx8 LINE L1 6241 7097 -376 1 780 1611 74 6 18 chr4 25628568 25628811 -130001309 + L1Md_T LINE L1 5380 5586 -297 1 780 8451 28 4 0 chr4 25628811 25629803 -130000317 + L1Md_T LINE L1 5587 6582 0 1 780 340 318 169 12 chr4 25629889 25630131 -129999989 + Lx8 LINE L1 7192 7471 -2 1 780 1047 135 5 11 chr4 25630546 25630733 -129999387 + Lx LINE L1 6469 6654 0 1 780 281 68 23 0 chr4 25631096 25631140 -129998980 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 780 3154 36 26 3 chr4 25631689 25632076 -129998044 + MTA_Mm LTR MaLR 1 396 0 1 780 233 315 27 0 chr4 25632366 25632477 -129997643 - L1MA5 LINE L1 -6 6294 6181 1 780 1779 202 38 14 chr4 25632705 25633071 -129997049 + MTC LTR MaLR 39 413 -8 1 780 889 113 7 60 chr4 25633073 25633224 -129996896 + B1_Mus1 SINE Alu 4 146 -2 1 780 458 322 91 22 chr4 25633539 25633829 -129996291 - L1MD3 LINE L1 -376 7619 7316 1 780 320 343 66 69 chr4 25633833 25634181 -129995939 - L1MD3 LINE L1 -677 7108 6762 1 780 322 255 10 0 chr4 25634314 25634412 -129995708 - Lx9 LINE L1 -39 7605 7507 1 780 226 256 96 60 chr4 25634421 25634587 -129995533 - L1MD3 LINE L1 -1348 6534 6363 1 780 236 220 62 0 chr4 25634919 25635015 -129995105 - L1MD3 LINE L1 -230 5949 5851 1 780 335 307 43 14 chr4 25635349 25635488 -129994632 - L1MD LINE L1 -2247 5748 5606 1 780 960 140 0 0 chr4 25635499 25635642 -129994478 - B1_Mus1 SINE Alu -5 143 1 1 780 231 268 0 18 chr4 25637147 25637204 -129992916 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 780 5090 71 12 5 chr4 25637436 25638105 -129992015 + L1_Mus2 LINE L1 5891 6564 -2 1 780 29 0 0 0 chr4 25638317 25638346 -129991774 + AT_rich Low_complexity Low_complexity 1 29 0 1 780 389 229 110 0 chr4 25638567 25638676 -129991444 + Lx5 LINE L1 6925 7045 -5 1 780 3399 99 13 58 chr4 25639214 25639750 -129990370 + RLTR1B LTR ERV1 1 512 0 1 780 843 261 5 28 chr4 25639993 25640206 -129989914 - B3 SINE B2 -4 212 5 2 780 424 357 14 28 chr4 25640290 25640434 -129989686 - RSINE1 SINE B4 0 165 24 2 780 248 308 30 104 chr4 25640980 25641114 -129989006 - L2c LINE L2 -3 3384 3261 2 780 237 284 15 0 chr4 25641469 25641536 -129988584 + GA-rich Low_complexity Low_complexity 2 69 0 2 780 933 166 7 0 chr4 25641616 25641767 -129988353 - ORR1B2 LTR MaLR -2 365 214 2 780 1667 42 9 0 chr4 25641782 25641995 -129988125 - L1Md_F2 LINE L1 -1 6581 6367 2 780 1533 262 13 33 chr4 25642089 25642484 -129987636 + MTD LTR MaLR 2 388 -31 2 780 208 213 33 0 chr4 25642485 25642546 -129987574 + T-rich Low_complexity Low_complexity 2 64 0 2 780 615 264 28 44 chr4 25642579 25642761 -129987359 + MTD-int LTR MaLR 2 180 -1078 2 780 715 223 89 22 chr4 25642739 25642918 -129987202 + MTD LTR MaLR 221 411 -8 2 780 310 318 97 26 chr4 25643104 25643259 -129986861 + L1ME1 LINE L1 5833 5998 -181 2 780 385 202 154 0 chr4 25643772 25643876 -129986244 + L1MA9 LINE L1 6183 6302 -10 2 780 262 216 40 13 chr4 25643876 25643951 -129986169 + ID4_ SINE ID 4 80 -3 2 780 292 290 63 139 chr4 25644037 25644289 -129985831 + MLT1B LTR MaLR 155 387 -3 2 780 556 13 40 0 chr4 25644493 25644569 -129985551 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 2 780 393 295 107 28 chr4 25645155 25645199 -129984921 - B3A SINE B2 -4 194 155 2 780 924 116 0 0 chr4 25645199 25645371 -129984749 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 780 393 295 107 28 chr4 25645371 25645504 -129984616 - B3A SINE B2 -44 154 3 2 780 482 215 11 0 chr4 25646280 25646373 -129983747 + B1_Mur4 SINE Alu 5 98 -52 2 780 767 318 40 9 chr4 25646478 25646799 -129983321 + Lx7 LINE L1 6977 7307 -389 2 780 487 238 14 14 chr4 25646842 25646987 -129983133 - Lx9 LINE L1 -9 7635 7491 2 780 274 239 0 27 chr4 25647117 25647165 -129982955 + polypurine Low_complexity Low_complexity 1 48 0 2 780 840 0 94 0 chr4 25647165 25647325 -129982795 + (GA)n Simple_repeat Simple_repeat 2 176 0 2 780 274 239 0 27 chr4 25647325 25647422 -129982698 + GA-rich Low_complexity Low_complexity 49 142 0 2 780 293 0 27 0 chr4 25649701 25649738 -129980382 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 780 386 246 78 9 chr4 25650354 25650469 -129979651 - B1_Mur3 SINE Alu -22 127 5 2 780 234 81 0 0 chr4 25650473 25650510 -129979610 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 780 250 132 19 19 chr4 25650517 25650571 -129979549 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 780 206 333 0 45 chr4 25650813 25650901 -129979219 - L2 LINE L2 -536 2883 2800 2 780 217 258 54 114 chr4 25651133 25651282 -129978838 - L2 LINE L2 -960 2459 2320 2 780 252 86 0 0 chr4 25651536 25651571 -129978549 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 780 264 331 174 8 chr4 25651665 25651808 -129978312 - L2 LINE L2 -1265 2154 1989 2 780 360 0 0 0 chr4 25651808 25651848 -129978272 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2 780 264 331 174 8 chr4 25651848 25651951 -129978169 - L2 LINE L2 -1431 1988 1868 2 780 359 259 43 112 chr4 25652030 25652191 -129977929 - B2_Mm2 SINE B2 -9 186 37 2 780 3065 97 7 0 chr4 25652525 25652958 -129977162 + L1_Mus1 LINE L1 6132 6567 0 2 780 257 305 0 0 chr4 25652970 25653052 -129977068 + A-rich Low_complexity Low_complexity 1 82 0 2 780 21 0 0 0 chr4 25653435 25653456 -129976664 + AT_rich Low_complexity Low_complexity 1 21 0 2 780 227 346 32 7 chr4 25654357 25654511 -129975609 + L1MEc LINE L1 1219 1376 -5024 2 780 38489 8 1 1 chr4 25654842 25661048 -129969072 + L1Md_A LINE L1 1 5586 -297 2 780 9029 2 0 0 chr4 25661048 25662044 -129968076 + L1Md_A LINE L1 5587 6582 0 2 780 24 0 0 0 chr4 25662083 25662107 -129968013 + AT_rich Low_complexity Low_complexity 1 24 0 2 780 1100 188 78 25 chr4 25662167 25662412 -129967708 - RLTR20A2 LTR ERVK -320 258 1 2 780 237 33 0 0 chr4 25662440 25662470 -129967650 + (T)n Simple_repeat Simple_repeat 1 30 0 2 780 740 68 10 0 chr4 25662683 25662786 -129967334 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 780 232 343 138 7 chr4 25664069 25664207 -129965913 + MLT1A0 LTR MaLR 5 160 -205 2 780 2575 61 3 17 chr4 25664281 25664633 -129965487 - L1_Mus1 LINE L1 0 6567 6221 2 780 468 123 0 0 chr4 25664909 25664982 -129965138 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 780 2067 235 56 7 chr4 25665419 25665989 -129964131 + Lx9 LINE L1 7047 7644 0 2 780 24 0 0 0 chr4 25666419 25666443 -129963677 + AT_rich Low_complexity Low_complexity 1 24 0 2 780 553 319 107 9 chr4 25666648 25667000 -129963120 + Lx8 LINE L1 6668 7050 -646 2 780 433 218 135 16 chr4 25667353 25667479 -129962641 - B1_Mur4 SINE Alu -7 143 3 2 780 747 213 16 31 chr4 25668053 25668250 -129961870 + B3 SINE B2 2 192 -3 2 780 25 0 0 0 chr4 25669261 25669286 -129960834 + AT_rich Low_complexity Low_complexity 1 25 0 2 780 526 278 68 0 chr4 25669369 25669502 -129960618 + B1_Mur4 SINE Alu 2 143 -7 2 780 1090 296 70 8 chr4 25669788 25670306 -129959814 - L1M3 LINE L1 -1383 4757 4208 2 780 2695 218 79 26 chr4 25670308 25671147 -129958973 + Lx9 LINE L1 4884 5772 -108 2 780 4268 101 45 2 chr4 25671147 25671765 -129958355 + L1_Mus3 LINE L1 5989 6633 -5 2 780 1498 244 61 124 chr4 25671765 25671975 -129958145 + Lx9 LINE L1 5773 5974 -1670 2 780 1686 338 94 28 chr4 25672052 25673009 -129957111 + Lx9 LINE L1 6399 7418 -226 2 780 218 95 0 23 chr4 25673010 25673053 -129957067 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 780 286 86 0 49 chr4 25673838 25673899 -129956221 + (CAAAAA)n Simple_repeat Simple_repeat 4 61 0 2 780 33 25 0 0 chr4 25674117 25674157 -129955963 + AT_rich Low_complexity Low_complexity 1 40 0 2 780 2941 40 23 23 chr4 25674606 25674990 -129955130 - L1Md_F2 LINE L1 -1 6581 6198 2 780 522 0 0 0 chr4 25675020 25675078 -129955042 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 780 241 252 99 30 chr4 25675387 25675518 -129954602 - L1M2 LINE L1 -470 5821 5682 2 780 1215 59 71 0 chr4 25675909 25676078 -129954042 - L1_Mus1 LINE L1 -1 6566 6386 2 780 3493 87 8 0 chr4 25676080 25676553 -129953567 + L1_Mus1 LINE L1 5902 6378 -189 2 780 22 70 0 0 chr4 25676566 25676609 -129953511 + AT_rich Low_complexity Low_complexity 1 43 0 2 780 1331 98 16 0 chr4 25676929 25677113 -129953007 - B2_Mm2 SINE B2 -7 188 2 2 780 505 351 7 0 chr4 25677229 25677377 -129952743 - B3 SINE B2 -5 211 63 2 780 6325 60 1 4 chr4 25678132 25678937 -129951183 + L1Md_F2 LINE L1 4784 5586 -297 2 780 8077 36 8 9 chr4 25678937 25679922 -129950198 + L1Md_F2 LINE L1 5587 6570 -12 2 780 880 216 165 13 chr4 25680252 25680561 -129949559 - Lx9 LINE L1 -7 7637 7282 2 780 21 36 0 0 chr4 25680592 25680620 -129949500 + AT_rich Low_complexity Low_complexity 1 28 0 2 780 4389 71 2 9 chr4 25680827 25681406 -129948714 + L1Md_F2 LINE L1 6006 6580 -2 2 780 802 264 35 0 chr4 25681590 25681787 -129948333 + B3 SINE B2 1 204 -12 2 780 747 266 48 22 chr4 25682071 25682383 -129947737 + Lx6 LINE L1 881 1200 -6528 2 780 9323 222 37 58 chr4 25682383 25685216 -129944904 + Lx6 LINE L1 3398 6693 -767 2 780 356 103 0 17 chr4 25685355 25685414 -129944706 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 2 780 1455 285 165 28 chr4 25685420 25686019 -129944101 + Lx6 LINE L1 6760 7440 -20 2 780 314 239 11 0 chr4 25686783 25686875 -129943245 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 780 432 152 116 0 chr4 25687713 25687825 -129942295 - Lx9 LINE L1 -1 7643 7519 2 780 635 352 26 60 chr4 25688286 25688706 -129941414 + Lx8 LINE L1 6087 6492 -981 2 780 812 322 115 77 chr4 25688867 25689439 -129940681 + Lx8 LINE L1 6563 7156 -317 2 781 21 0 0 0 chr4 25690221 25690242 -129939878 + AT_rich Low_complexity Low_complexity 1 21 0 2 781 483 18 0 0 chr4 25690962 25691018 -129939102 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 781 239 0 0 31 chr4 25691660 25691692 -129938428 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2 781 373 349 100 36 chr4 25691954 25692233 -129937887 - LTR80A LTR ERVL -232 351 55 2 781 578 131 10 0 chr4 25692772 25692871 -129937249 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 781 27 0 0 0 chr4 25693590 25693617 -129936503 + AT_rich Low_complexity Low_complexity 1 27 0 2 781 636 267 40 58 chr4 25693736 25693959 -129936161 + B4A SINE B4 25 243 -49 2 781 369 43 0 0 chr4 25694009 25694056 -129936064 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 781 257 379 92 0 chr4 25694472 25694625 -129935495 + MARNA DNA Mariner 90 256 -330 2 781 693 45 0 0 chr4 25694821 25694910 -129935210 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 781 23 0 0 0 chr4 25695062 25695085 -129935035 + AT_rich Low_complexity Low_complexity 1 23 0 2 781 210 91 0 0 chr4 25696995 25697028 -129933092 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 781 370 290 103 103 chr4 25697216 25697508 -129932612 + ORR1E LTR MaLR 10 301 -58 2 781 429 20 0 0 chr4 25697654 25697704 -129932416 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 781 240 211 19 0 chr4 25697705 25697757 -129932363 + ORR1E LTR MaLR 327 379 0 2 781 411 56 0 0 chr4 25698299 25698353 -129931767 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 781 816 270 41 69 chr4 25698450 25698740 -129931380 + B4A SINE B4 5 286 -6 2 781 641 134 40 36 chr4 25698939 25699084 -129931036 - Lx LINE L1 -218 6420 6263 2 781 268 248 78 19 chr4 25699084 25699187 -129930933 + RMER12 LTR ERVK 742 850 -472 2 781 275 141 16 0 chr4 25699189 25699253 -129930867 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 781 202 276 14 56 chr4 25699349 25699491 -129930629 + A-rich Low_complexity Low_complexity 1 136 0 2 781 34 72 0 0 chr4 25699737 25699806 -129930314 + AT_rich Low_complexity Low_complexity 1 69 0 2 781 243 204 0 0 chr4 25699905 25699959 -129930161 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 781 2890 125 35 23 chr4 25700001 25700483 -129929637 + Lx LINE L1 6162 6649 -5 2 781 239 71 24 0 chr4 25700486 25700528 -129929592 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 781 600 14 0 0 chr4 25701500 25701569 -129928551 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2 781 265 292 0 30 chr4 25701570 25701669 -129928451 - Lx7 LINE L1 -257 7439 7344 2 781 817 250 19 42 chr4 25701707 25701920 -129928200 - Lx9 LINE L1 -407 7237 7030 2 781 515 147 36 24 chr4 25701923 25702090 -129928030 + (TA)n Simple_repeat Simple_repeat 1 169 0 2 781 2545 75 4 142 chr4 25702738 25703188 -129926932 - L1_Mus1 LINE L1 -5 6562 6175 3 781 550 115 0 0 chr4 25703188 25703266 -129926854 + L1_Mus1 LINE L1 6085 6162 -405 3 781 24 0 0 0 chr4 25703934 25703958 -129926162 + AT_rich Low_complexity Low_complexity 1 24 0 3 781 28 29 0 0 chr4 25704076 25704111 -129926009 + AT_rich Low_complexity Low_complexity 1 35 0 3 781 480 122 0 0 chr4 25704111 25704193 -129925927 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 781 2009 186 26 8 chr4 25704758 25705137 -129924983 + ORR1B1 LTR MaLR 1 386 -8 3 781 202 271 153 58 chr4 25705209 25705346 -129924774 - L2c LINE L2 -8 3379 3230 3 781 205 204 23 0 chr4 25705466 25705510 -129924610 + GA-rich Low_complexity Low_complexity 2 46 0 3 781 1261 109 16 0 chr4 25707523 25707706 -129922414 + B2_Mm2 SINE B2 1 186 -9 3 781 331 304 130 0 chr4 25707896 25708034 -129922086 + MER5A1 DNA MER1_type 1 156 -10 3 781 895 216 57 5 chr4 25708654 25708863 -129921257 + Lx7 LINE L1 6976 7195 -501 3 781 567 221 58 206 chr4 25708937 25709028 -129921092 + Lx7 LINE L1 7195 7293 -403 3 781 477 0 0 0 chr4 25709028 25709081 -129921039 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 781 567 221 58 206 chr4 25709081 25709387 -129920733 + Lx7 LINE L1 7294 7532 -164 3 781 414 324 70 33 chr4 25709426 25709726 -129920394 - L1MC1 LINE L1 -316 6017 5707 3 781 22 0 0 0 chr4 25709749 25709771 -129920349 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 957 73 7 75 chr4 25710322 25710469 -129919651 + B1_Mus1 SINE Alu 2 138 -10 3 781 247 286 5 69 chr4 25710755 25710943 -129919177 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 3 781 22 0 0 0 chr4 25711521 25711543 -129918577 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 326 356 31 41 chr4 25712603 25712799 -129917321 - L1ME1 LINE L1 -92 6087 5894 3 781 274 291 102 104 chr4 25712840 25713293 -129916827 - L1ME1 LINE L1 -371 5808 5357 3 781 1775 130 51 75 chr4 25714615 25714948 -129915172 - ORR1A3 LTR MaLR -1 325 1 3 781 194 194 13 40 chr4 25715014 25715089 -129915031 + CT-rich Low_complexity Low_complexity 3 75 0 3 781 510 17 0 0 chr4 25716447 25716506 -129913614 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 781 221 77 0 49 chr4 25717049 25717090 -129913030 + (TTG)n Simple_repeat Simple_repeat 3 41 0 3 781 5891 61 0 0 chr4 25717838 25718609 -129911511 + L1Md_T LINE L1 5843 6582 0 3 781 438 352 75 0 chr4 25718830 25719029 -129911091 + LTR40b LTR ERVL 4 217 -245 3 781 416 262 44 89 chr4 25719063 25719243 -129910877 + LTR40b LTR ERVL 348 519 0 3 781 467 90 0 13 chr4 25719873 25719952 -129910168 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 781 387 105 0 0 chr4 25719952 25720009 -129910111 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 781 346 339 5 127 chr4 25720388 25720577 -129909543 + B3 SINE B2 51 216 0 3 781 21 36 0 0 chr4 25721548 25721576 -129908544 + AT_rich Low_complexity Low_complexity 1 28 0 3 781 286 327 38 19 chr4 25723511 25723617 -129906503 - PB1D7 SINE Alu 0 120 13 3 781 221 222 0 73 chr4 25726986 25727054 -129903066 + GA-rich Low_complexity Low_complexity 2 64 0 3 781 375 162 0 0 chr4 25727784 25727864 -129902256 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 3 781 418 104 39 0 chr4 25727850 25727927 -129902193 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 3 781 282 56 0 0 chr4 25727927 25727963 -129902157 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 3 781 1130 116 3 0 chr4 25728334 25728646 -129901474 + (TG)n Simple_repeat Simple_repeat 1 312 0 3 781 650 302 41 15 chr4 25729552 25729747 -129900373 + ORR1D1 LTR MaLR 1 200 -174 3 781 3411 158 58 17 chr4 25729742 25730611 -129899509 + ORR1A3-int LTR MaLR 1003 1772 -191 3 781 392 286 36 21 chr4 25731177 25731370 -129898750 + L1M7 LINE L1 859 1054 -5257 3 781 311 353 47 16 chr4 25731433 25731686 -129898434 + L1M7 LINE L1 1145 1405 -4810 3 781 255 125 0 0 chr4 25731709 25731749 -129898371 + (TCC)n Simple_repeat Simple_repeat 3 42 0 3 781 201 196 0 0 chr4 25731753 25731809 -129898311 + T-rich Low_complexity Low_complexity 1 56 0 3 781 1998 288 62 2 chr4 25731832 25732367 -129897753 - Lx6 LINE L1 -99 7361 6795 3 781 230 296 37 12 chr4 25732452 25732534 -129897586 + L1M7 LINE L1 1619 1702 -4609 3 781 200 217 0 0 chr4 25732541 25732587 -129897533 + A-rich Low_complexity Low_complexity 1 46 0 3 781 838 303 38 56 chr4 25732955 25732987 -129897133 - B4A SINE B4 -2 290 270 3 781 207 0 0 0 chr4 25732987 25733010 -129897110 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 781 838 303 38 56 chr4 25733010 25733264 -129896856 - B4A SINE B4 -23 269 9 3 781 358 280 74 80 chr4 25733337 25733714 -129896406 + L1M7 LINE L1 2015 2389 -3826 3 781 21 36 0 0 chr4 25733783 25733811 -129896309 + AT_rich Low_complexity Low_complexity 1 28 0 3 781 1104 281 98 44 chr4 25734555 25735266 -129894854 - L1MC1 LINE L1 -13 6331 5555 3 781 312 329 46 73 chr4 25735646 25735948 -129894172 - L1MC1 LINE L1 -786 5547 5254 3 781 234 0 0 0 chr4 25736013 25736039 -129894081 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 781 4378 268 88 92 chr4 25736110 25737269 -129892851 - L1_Mur3 LINE L1 -1191 4689 3481 3 781 396 317 8 0 chr4 25737269 25737389 -129892731 - B1_Mur2 SINE Alu 0 149 29 3 781 4378 268 88 92 chr4 25737389 25738515 -129891605 - L1_Mur3 LINE L1 -1191 3480 2305 3 781 716 199 23 0 chr4 25738515 25738646 -129891474 + B1_Mur3 SINE Alu 2 135 -14 3 781 4378 268 88 92 chr4 25738646 25739006 -129891114 - L1_Mur3 LINE L1 -3576 2304 1935 3 781 1725 168 41 92 chr4 25739012 25739380 -129890740 + RLTR41 LTR ERV1 98 446 0 3 781 279 214 37 184 chr4 25739557 25739666 -129890454 + MT2B LTR ERVL 165 257 -344 3 781 610 235 22 43 chr4 25739570 25739708 -129890412 + B1_Mur1 SINE Alu 15 149 0 3 781 441 0 0 0 chr4 25740076 25740125 -129889995 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 781 302 288 27 0 chr4 25740149 25740222 -129889898 + B4 SINE B4 22 96 -196 3 781 1051 144 162 25 chr4 25740222 25740457 -129889663 - L1_Mur3 LINE L1 -1035 4845 4579 3 781 578 345 15 15 chr4 25740639 25740839 -129889281 + B4 SINE B4 85 284 -8 3 781 29 28 0 0 chr4 25741037 25741073 -129889047 + AT_rich Low_complexity Low_complexity 1 36 0 3 781 900 197 45 29 chr4 25741930 25742176 -129887944 - Lx7 LINE L1 0 7696 7447 3 781 392 328 113 38 chr4 25742259 25742525 -129887595 + L1MC2 LINE L1 5706 5991 -353 3 781 271 270 27 13 chr4 25742668 25742743 -129887377 - B1_Mur1 SINE Alu -38 111 36 3 781 1432 184 81 142 chr4 25742755 25743211 -129886909 - RLTR23 LTR ERV1 -2 428 1 3 781 267 173 0 0 chr4 25743251 25743303 -129886817 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 781 657 168 191 6 chr4 25743707 25743875 -129886245 - RLTR15 LTR ERVK 0 359 161 3 781 3239 164 34 8 chr4 25743904 25744519 -129885601 - L1_Mur2 LINE L1 -34 5843 5213 3 781 262 317 0 24 chr4 25744704 25744788 -129885332 + GA-rich Low_complexity Low_complexity 4 85 0 3 781 2078 219 77 45 chr4 25744795 25745378 -129884742 - RLTR1D LTR ERV1 0 605 4 3 781 368 210 83 7 chr4 25745586 25745730 -129884390 - Lx9 LINE L1 -3 7641 7487 3 781 22 35 0 0 chr4 25745742 25745771 -129884349 + AT_rich Low_complexity Low_complexity 1 29 0 3 781 432 352 42 38 chr4 25745791 25746054 -129884066 - Lx8 LINE L1 -76 7397 7134 3 781 35 24 0 0 chr4 25746182 25746224 -129883896 + AT_rich Low_complexity Low_complexity 1 42 0 3 781 189 107 0 0 chr4 25746791 25746819 -129883301 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 781 664 155 0 0 chr4 25746820 25746923 -129883197 - U6 snRNA snRNA -3 104 2 3 781 26 82 0 0 chr4 25747043 25747104 -129883016 + AT_rich Low_complexity Low_complexity 1 61 0 3 781 21 0 0 0 chr4 25747188 25747209 -129882911 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 27 49 0 0 chr4 25747667 25747708 -129882412 + AT_rich Low_complexity Low_complexity 1 41 0 3 781 980 241 8 44 chr4 25748154 25748402 -129881718 - ORR1B2 LTR MaLR -5 362 124 3 781 264 254 17 0 chr4 25748360 25748419 -129881701 - B1_Mus2 SINE Alu -48 99 40 3 781 426 217 48 40 chr4 25748435 25748560 -129881560 - ORR1B2-int LTR MaLR -887 622 497 3 781 504 137 46 53 chr4 25748606 25748737 -129881383 + Lx9 LINE L1 7515 7644 0 3 781 6602 145 20 31 chr4 25748741 25749022 -129881098 - L1_Mur2 LINE L1 -1067 4810 4514 3 781 699 99 0 0 chr4 25749022 25749123 -129880997 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 3 781 6602 145 20 31 chr4 25749123 25749138 -129880982 - L1_Mur2 LINE L1 -1364 4513 4513 3 781 1718 186 7 10 chr4 25749138 25749448 -129880672 - Lx3A LINE L1 -7 6974 6666 3 781 6602 145 20 31 chr4 25749448 25750378 -129879742 - L1_Mur2 LINE L1 -1364 4513 3596 3 781 486 118 0 0 chr4 25750374 25750442 -129879678 + L1_Mur2 LINE L1 3756 3823 -2054 3 781 495 228 0 21 chr4 25750452 25750546 -129879574 - RMER1A Other Other -650 380 289 3 781 1442 287 90 10 chr4 25750576 25751081 -129879039 - RMER1B Other Other -546 520 7 3 781 297 0 0 0 chr4 25751340 25751373 -129878747 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 781 243 319 11 0 chr4 25751539 25751633 -129878487 + L1M2 LINE L1 5628 5722 -590 3 781 735 263 222 73 chr4 25751776 25752240 -129877880 + MT2A LTR ERVL 1 533 0 3 781 3268 198 16 40 chr4 25752240 25752941 -129877179 + MERVL_2A-int LTR ERVL 1 684 -5077 3 781 1907 197 23 53 chr4 25752941 25753425 -129876695 - Lx3C LINE L1 -1 7057 6477 3 781 6030 190 38 38 chr4 25753425 25754131 -129875989 + MERVL_2A-int LTR ERVL 679 1391 -4370 3 781 1153 82 0 0 chr4 25754131 25754278 -129875842 - B1_Mus1 SINE Alu -1 147 1 3 781 6030 190 38 38 chr4 25754278 25754826 -129875294 + MERVL_2A-int LTR ERVL 1392 1932 -3829 3 781 356 68 0 0 chr4 25754836 25754880 -129875240 - Lx3_Mus LINE L1 -213 6796 6753 3 781 3411 40 2 5 chr4 25754932 25755356 -129874764 + L1Md_F2 LINE L1 6160 6582 0 3 781 14340 99 20 18 chr4 25755364 25757638 -129872482 + MusHAL1 LINE L1 376 2654 -58 3 781 464 70 0 27 chr4 25757705 25757779 -129872341 + (CATA)n Simple_repeat Simple_repeat 1 72 0 3 781 681 295 62 62 chr4 25758000 25758257 -129871863 + Lx6 LINE L1 7193 7449 -11 3 781 235 329 0 0 chr4 25758270 25758343 -129871777 + ID4 SINE ID 1 73 -10 3 781 315 0 0 0 chr4 25758567 25758602 -129871518 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 781 3413 262 41 87 chr4 25759370 25760480 -129869640 - RMER1B Other Other -5 1061 2 3 781 226 233 267 0 chr4 25760641 25760757 -129869363 - Lx9 LINE L1 -57 7587 7441 3 781 515 260 60 55 chr4 25760737 25760920 -129869200 - Lx9 LINE L1 -1155 6489 6306 3 781 41159 5 0 0 chr4 25761977 25768354 -129861766 - L1Md_A LINE L1 0 6582 205 3 781 22 0 0 0 chr4 25769498 25769520 -129860600 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 14377 80 4 1 chr4 25769556 25771526 -129858594 + L1Md_F2 LINE L1 3611 5585 -298 3 781 7035 92 9 4 chr4 25771527 25772517 -129857603 + L1Md_F2 LINE L1 5587 6581 -1 3 781 389 299 15 0 chr4 25772517 25772651 -129857469 + L1_Mur3 LINE L1 4446 4581 -1299 3 781 5046 153 23 4 chr4 25772674 25773512 -129856608 - Lx3A LINE L1 -5 6976 6123 4 781 459 0 0 0 chr4 25773572 25773623 -129856497 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 781 2084 320 70 30 chr4 25773765 25775230 -129854890 + L1_Mur3 LINE L1 1258 2780 -3100 4 781 2836 21 0 43 chr4 25775365 25775717 -129854403 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 781 10072 23 2 4 chr4 25775717 25776877 -129853243 - IAPEz-int LTR ERVK 0 6481 5325 4 781 30978 25 28 9 chr4 25776877 25780714 -129849406 - IAPEz-int LTR ERVK -2566 3915 8 4 781 2869 21 0 43 chr4 25780714 25781066 -129849054 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 781 481 198 29 10 chr4 25781130 25781232 -129848888 - RMER1B Other Other -240 826 723 4 781 1081 251 147 47 chr4 25781234 25781614 -129848506 - RMER1B Other Other -600 466 49 4 781 325 261 0 0 chr4 25782049 25782137 -129847983 - RMER1B Other Other -918 148 61 4 781 4278 195 37 116 chr4 25782222 25783215 -129846905 - L1_Mur3 LINE L1 -527 5353 4472 4 781 2305 50 7 10 chr4 25783215 25783515 -129846605 - L1_Mus1 LINE L1 0 6567 6269 4 781 4278 195 37 116 chr4 25783515 25784007 -129846113 - L1_Mur3 LINE L1 -1409 4471 3986 4 781 808 332 39 35 chr4 25784009 25784415 -129845705 + Lx9 LINE L1 6784 7191 -453 4 781 6211 103 50 4 chr4 25784780 25785858 -129844262 - L1_Mus4 LINE L1 -3 6633 5507 4 781 26 0 0 0 chr4 25785902 25785928 -129844192 + AT_rich Low_complexity Low_complexity 1 26 0 4 781 196 307 13 51 chr4 25786875 25786954 -129843166 + MIRm SINE MIR 201 276 0 4 781 516 280 48 5 chr4 25787387 25787407 -129842713 + Lx6 LINE L1 888 908 -6820 4 781 207 0 0 0 chr4 25787407 25787430 -129842690 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 781 516 280 48 5 chr4 25787430 25787617 -129842503 + Lx6 LINE L1 909 1104 -6624 4 781 180 152 0 0 chr4 25787617 25787650 -129842470 + A-rich Low_complexity Low_complexity 1 33 0 4 781 201 189 19 0 chr4 25787658 25787711 -129842409 + (CAA)n Simple_repeat Simple_repeat 1 54 0 4 781 313 268 91 15 chr4 25787716 25787798 -129842322 + Lx6 LINE L1 1041 1135 -5951 4 781 261 75 0 0 chr4 25787798 25787838 -129842282 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 4 781 767 238 47 39 chr4 25787838 25788175 -129841945 + Lx6 LINE L1 1136 1476 -4401 4 781 1519 222 10 0 chr4 25788685 25789068 -129841052 + Lx6 LINE L1 1486 1872 -4008 4 781 213 132 0 0 chr4 25789079 25789117 -129841003 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 781 11148 211 25 21 chr4 25789117 25790255 -129839865 + Lx6 LINE L1 2991 4107 -1773 4 781 180 0 0 0 chr4 25790255 25790275 -129839845 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 781 11148 220 25 20 chr4 25790275 25792394 -129837726 + Lx6 LINE L1 4108 6268 -1192 4 781 455 312 34 0 chr4 25792386 25792562 -129837558 + Lx6 LINE L1 6573 6754 -706 4 781 23 0 0 0 chr4 25793095 25793118 -129837002 + AT_rich Low_complexity Low_complexity 1 23 0 4 781 206 222 0 0 chr4 25793385 25793421 -129836699 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 4 781 1382 38 21 21 chr4 25794125 25794312 -129835808 - L1Md_F3 LINE L1 0 6584 6398 4 781 5950 29 3 0 chr4 25794312 25795036 -129835084 + L1Md_F3 LINE L1 5660 6385 -199 4 781 23 54 0 0 chr4 25798083 25798120 -129832000 + AT_rich Low_complexity Low_complexity 1 37 0 4 781 743 256 43 19 chr4 25798130 25798341 -129831779 + B3 SINE B2 1 216 0 4 781 21 0 0 0 chr4 25798639 25798660 -129831460 + AT_rich Low_complexity Low_complexity 1 21 0 4 781 3668 147 73 0 chr4 25798876 25799508 -129830612 - RLTR33 LTR ERVK 0 678 1 4 781 1112 308 79 48 chr4 25799784 25800402 -129829718 + RMER15-int LTR ERVL 4281 4917 -82 4 781 396 353 86 16 chr4 25800513 25800758 -129829362 + RMER15 LTR ERVL 300 561 -14 4 781 397 316 43 0 chr4 25800870 25800987 -129829133 - PB1 SINE Alu 0 127 6 4 781 501 231 65 30 chr4 25801198 25801497 -129828623 - RMER10A LTR ERVL -7 435 16 4 781 407 308 24 71 chr4 25801616 25801742 -129828378 - RSINE1 SINE B4 -16 149 30 4 781 226 225 0 0 chr4 25801900 25801940 -129828180 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 781 394 336 13 77 chr4 25802877 25803032 -129827088 + RSINE1 SINE B4 8 152 -13 4 781 192 125 0 0 chr4 25803044 25803076 -129827044 + (ATG)n Simple_repeat Simple_repeat 2 33 0 4 781 6130 101 1 3 chr4 25803098 25804012 -129826108 + L1_Mm LINE L1 4758 5669 -214 4 781 1489 287 66 15 chr4 25804110 25804848 -129825272 + RMER1A Other Other 1 469 -561 4 781 1036 250 17 20 chr4 25804931 25805229 -129824891 - Lx6 LINE L1 -471 6989 6693 4 781 1057 235 232 23 chr4 25805242 25805638 -129824482 - Lx6 LINE L1 -948 6512 6034 4 781 235 183 133 0 chr4 25805637 25805697 -129824423 - Lx6 LINE L1 -159 5721 5654 4 781 307 274 17 67 chr4 25805749 25805929 -129824191 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 4 781 26 64 0 0 chr4 25806194 25806241 -129823879 + AT_rich Low_complexity Low_complexity 1 47 0 4 781 624 281 124 0 chr4 25806260 25806438 -129823682 + B3 SINE B2 14 213 -3 4 781 264 200 0 0 chr4 25806694 25806769 -129823351 + A-rich Low_complexity Low_complexity 1 75 0 4 781 26 64 0 0 chr4 25807894 25807941 -129822179 + AT_rich Low_complexity Low_complexity 1 47 0 4 781 636 309 101 38 chr4 25808362 25808948 -129821172 + L1MC1 LINE L1 5710 6332 -1 4 781 1589 321 106 12 chr4 25809360 25809993 -129820127 + Lx8 LINE L1 6272 6950 -523 4 781 404 86 14 0 chr4 25809993 25810063 -129820057 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 781 1589 321 106 12 chr4 25810063 25810346 -129819774 + Lx8 LINE L1 6951 7273 -200 4 781 1683 209 87 78 chr4 25810598 25811126 -129818994 - MT2A LTR ERVL 0 533 1 4 781 468 51 0 0 chr4 25811141 25811200 -129818920 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 781 484 299 39 113 chr4 25812289 25812519 -129817601 - B4 SINE B4 0 292 80 4 781 414 0 0 0 chr4 25813233 25813279 -129816841 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 781 333 0 0 0 chr4 25813279 25813315 -129816805 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 781 303 347 72 81 chr4 25813961 25814321 -129815799 - L1MD2 LINE L1 -5478 1069 713 4 781 2670 236 99 34 chr4 25814350 25815114 -129815006 + RMER19B LTR ERVK 1 666 -236 4 781 3685 45 0 2 chr4 25815503 25815951 -129814169 - L1Md_T LINE L1 0 6582 6136 4 781 1105 86 0 0 chr4 25816938 25817077 -129813043 - B1_Mus1 SINE Alu -9 139 1 4 781 1637 295 40 50 chr4 25817148 25817729 -129812391 + RMER15 LTR ERVL 1 575 0 4 781 488 351 5 19 chr4 25817855 25818061 -129812059 + RMER15-int LTR ERVL 295 497 -4502 4 781 957 159 300 16 chr4 25818069 25818350 -129811770 - ORR1C1 LTR MaLR 0 378 1 4 781 2867 227 36 117 chr4 25818354 25818678 -129811442 - ORR1C1-int LTR MaLR -5 1504 1136 4 781 675 67 0 0 chr4 25818678 25818767 -129811353 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 781 2867 273 65 43 chr4 25818767 25819660 -129810460 - ORR1C1-int LTR MaLR -235 1135 227 4 781 617 250 0 7 chr4 25819658 25819799 -129810321 - ORR1D-int LTR MaLR -184 1186 1047 4 781 1380 238 34 54 chr4 25819819 25820205 -129809915 + ORR1C1 LTR MaLR 1 378 0 4 781 4445 151 127 64 chr4 25820287 25820956 -129809164 - RLTR25B LTR ERVK 0 1028 264 4 781 1475 153 78 80 chr4 25820956 25821157 -129808963 - RMER17C LTR ERVK 0 410 205 4 97 231 36 0 0 chr4 25821157 25821185 -129808935 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 4 782 1216 64 23 0 chr4 25821187 25821360 -129808760 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 782 1475 153 78 80 chr4 25821360 25821566 -129808554 - RMER17C LTR ERVK -206 204 1 4 782 4445 151 127 64 chr4 25821566 25821863 -129808257 - RLTR25B LTR ERVK -765 263 4 4 782 396 329 41 41 chr4 25821874 25822045 -129808075 + RMER15-int LTR ERVL 679 849 -4150 4 782 336 320 79 16 chr4 25822052 25822179 -129807941 - RLTR21 LTR ERVK 0 1572 1438 4 782 543 16 0 0 chr4 25822199 25822263 -129807857 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 782 510 31 0 0 chr4 25822263 25822326 -129807794 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 782 3085 209 57 15 chr4 25822336 25823015 -129807105 - RMER12B LTR ERVK -229 1175 464 4 782 6612 118 18 0 chr4 25823015 25824019 -129806101 - Lx2 LINE L1 0 6997 5976 4 782 3085 209 57 15 chr4 25824019 25824057 -129806063 - RMER12B LTR ERVK -941 463 428 4 782 32119 75 5 10 chr4 25824057 25827566 -129802554 - L1Md_F2 LINE L1 -35 6547 3056 4 782 1107 96 0 7 chr4 25827566 25827713 -129802407 - B1_Mm SINE Alu -1 146 1 4 782 32119 80 17 7 chr4 25827713 25830178 -129799942 - L1Md_F2 LINE L1 -2828 3055 568 4 782 948 218 56 0 chr4 25830184 25830418 -129799702 - RMER12B LTR ERVK -941 463 217 4 782 3460 263 48 48 chr4 25830437 25831594 -129798526 + RMER15-int LTR ERVL 866 2022 -2977 4 782 2393 93 11 6 chr4 25832016 25832371 -129797749 + L1_Mus3 LINE L1 6266 6622 -16 4 782 228 67 0 0 chr4 25832371 25832401 -129797719 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 4 782 1212 309 75 57 chr4 25832459 25832725 -129797395 + RMER15-int LTR ERVL 4216 4491 -508 4 782 1094 57 21 0 chr4 25832725 25832866 -129797254 + B1_Mus1 SINE Alu 5 148 0 4 782 1435 309 75 57 chr4 25832866 25833369 -129796751 + RMER15-int LTR ERVL 4492 4999 0 4 782 613 56 22 0 chr4 25833409 25833499 -129796621 + (AGGGGG)n Simple_repeat Simple_repeat 5 96 0 4 782 762 32 0 0 chr4 25833499 25833592 -129796528 + (GAA)n Simple_repeat Simple_repeat 1 93 0 4 782 1169 296 64 3 chr4 25833602 25833931 -129796189 + RMER15 LTR ERVL 214 562 -13 4 782 289 206 11 11 chr4 25833975 25834068 -129796052 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 782 185 94 0 30 chr4 25834415 25834448 -129795672 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 782 284 353 0 0 chr4 25834581 25834683 -129795437 - BC1_Mm scRNA scRNA -49 103 2 4 782 21 36 0 0 chr4 25835019 25835047 -129795073 + AT_rich Low_complexity Low_complexity 1 28 0 4 782 318 267 19 47 chr4 25835193 25835299 -129794821 - AmnSINE1 SINE SINE -439 136 34 4 782 479 222 44 0 chr4 25835240 25835330 -129794790 - 5S rRNA rRNA -26 95 2 4 782 220 292 0 0 chr4 25835619 25835691 -129794429 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 782 330 284 57 0 chr4 25835725 25835813 -129794307 + Lx9 LINE L1 6533 6625 -1019 4 782 701 202 16 0 chr4 25835842 25835971 -129794149 - B1_Mus2 SINE Alu -7 140 10 4 782 5520 165 33 33 chr4 25836205 25837331 -129792789 + L1_Mur2 LINE L1 3331 4456 -1421 4 782 1854 160 289 18 chr4 25837422 25837931 -129792189 - RMER6C LTR ERVK 0 690 44 4 782 1183 269 123 0 chr4 25837934 25838243 -129791877 + Lx6 LINE L1 7088 7434 -26 4 782 3493 278 71 58 chr4 25838547 25839851 -129790269 - RMER1C Other Other 0 1342 22 4 782 204 67 0 0 chr4 25840662 25840692 -129789428 + (T)n Simple_repeat Simple_repeat 1 30 0 4 782 593 49 12 0 chr4 25841633 25841715 -129788405 + L1_Mus2 LINE L1 6483 6565 -1 4 782 1542 221 68 10 chr4 25841976 25842374 -129787746 - MTC LTR MaLR 0 421 1 4 782 616 256 16 0 chr4 25842734 25842855 -129787265 + RSINE1 SINE B4 8 130 -35 4 782 397 331 57 14 chr4 25843167 25843308 -129786812 - B1_Mur2 SINE Alu -2 147 1 4 782 702 35 0 0 chr4 25843574 25843659 -129786461 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 782 2847 52 0 0 chr4 25843662 25844007 -129786113 + ORR1A1 LTR MaLR 2 346 0 4 782 13421 70 2 2 chr4 25844007 25845798 -129784322 + ORR1A1-int LTR MaLR 1 1792 0 4 782 1365 45 0 0 chr4 25845798 25845976 -129784144 + ORR1A1 LTR MaLR 1 178 -168 4 782 1356 72 6 3 chr4 25845977 25846238 -129783882 + ORR1A1 LTR MaLR 1 316 -30 4 782 384 22 0 0 chr4 25846248 25846293 -129783827 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 782 1037 140 6 0 chr4 25847401 25847579 -129782541 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 4 782 191 218 18 0 chr4 25847584 25847639 -129782481 + CT-rich Low_complexity Low_complexity 6 61 0 4 782 1294 145 9 9 chr4 25847735 25847958 -129782162 - Lx2 LINE L1 0 6997 6775 4 782 3497 129 9 7 chr4 25847958 25848495 -129781625 - Lx2 LINE L1 -354 6643 6106 4 782 2583 163 19 19 chr4 25848498 25848968 -129781152 - Lx2 LINE L1 -512 6485 6016 4 782 2823 76 128 0 chr4 25848968 25849389 -129780731 + IAPLTR2_Mm LTR ERVK 1 475 0 4 782 926 119 99 18 chr4 25849390 25849561 -129780559 + IAPEz-int LTR ERVK 9 193 -6288 4 782 228 327 0 0 chr4 25849561 25849616 -129780504 + RLTR27 LTR ERVK 221 275 -34 5 782 3442 59 22 16 chr4 25849616 25850182 -129779938 + IAPEz-int LTR ERVK 168 662 -5819 4 782 939 59 0 0 chr4 25850182 25850301 -129779819 + IAPEz-int LTR ERVK 1359 1477 -5004 4 782 1884 88 12 0 chr4 25850296 25850547 -129779573 + IAPEz-int LTR ERVK 2244 2497 -5183 4 782 14197 50 11 3 chr4 25850574 25852332 -129777788 + IAPEz-int LTR ERVK 4708 6479 -2 5 782 2964 82 87 0 chr4 25852334 25852771 -129777349 + IAPLTR2_Mm LTR ERVK 1 475 0 5 782 5356 157 15 34 chr4 25852773 25854014 -129776106 - Lx2 LINE L1 -978 6019 4813 5 782 10185 165 18 9 chr4 25854014 25854584 -129775536 + L1_Mur2 LINE L1 2905 3475 -2402 5 782 2256 54 0 0 chr4 25854584 25854863 -129775257 + L1Md_T LINE L1 6303 6581 -1 5 782 10185 165 18 9 chr4 25854863 25856205 -129773915 + L1_Mur2 LINE L1 3476 4835 -1042 5 782 235 237 90 30 chr4 25856335 25856435 -129773685 - Lx9 LINE L1 0 7644 7539 5 782 477 50 0 0 chr4 25856438 25856498 -129773622 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 782 844 243 4 40 chr4 25856502 25856729 -129773391 - Lx9 LINE L1 -179 7465 7247 5 782 545 309 33 0 chr4 25856847 25856999 -129773121 - RSINE1 SINE B4 0 165 9 5 782 25 31 0 0 chr4 25857003 25857035 -129773085 + AT_rich Low_complexity Low_complexity 1 32 0 5 782 219 25 75 0 chr4 25857638 25857678 -129772442 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 782 180 0 0 0 chr4 25857691 25857711 -129772409 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 782 339 127 0 0 chr4 25858208 25858271 -129771849 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 782 3084 25 0 0 chr4 25858549 25858906 -129771214 - L1Md_F3 LINE L1 -14 6570 6214 5 782 194 261 72 0 chr4 25859303 25859372 -129770748 - L2 LINE L2 -1119 2300 2227 5 782 207 0 0 0 chr4 25859460 25859483 -129770637 + (T)n Simple_repeat Simple_repeat 1 23 0 5 782 29340 119 9 6 chr4 25859806 25866173 -129763947 + L1_Mus3 LINE L1 248 6631 -7 5 782 210 37 0 0 chr4 25866177 25866204 -129763916 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 782 1896 305 66 6 chr4 25866774 25867506 -129762614 + Lx9 LINE L1 6713 7488 -156 5 782 418 238 0 0 chr4 25867510 25867594 -129762526 + U6 snRNA snRNA 1 84 -23 5 782 653 53 11 0 chr4 25867602 25867696 -129762424 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 5 782 180 0 0 0 chr4 25867701 25867721 -129762399 + (T)n Simple_repeat Simple_repeat 1 20 0 5 782 557 309 18 50 chr4 25867888 25868167 -129761953 - L1MA8 LINE L1 -111 6180 5911 5 782 840 10 0 0 chr4 25868261 25868358 -129761762 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 782 299 298 81 57 chr4 25868686 25869021 -129761099 + L1M5 LINE L1 2589 2931 -3215 5 782 22 35 0 0 chr4 25869242 25869271 -129760849 + AT_rich Low_complexity Low_complexity 1 29 0 5 782 1120 88 0 7 chr4 25869292 25869441 -129760679 + B1_Mus1 SINE Alu 1 148 0 5 782 198 0 0 0 chr4 25869441 25869463 -129760657 + (CAAAAA)n Simple_repeat Simple_repeat 6 27 0 5 782 180 135 0 0 chr4 25869575 25869612 -129760508 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 782 535 114 48 8 chr4 25869605 25869729 -129760391 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 5 782 16249 161 12 15 chr4 25870070 25873367 -129756753 + L1_Mus3 LINE L1 559 3851 -2032 5 782 315 0 0 0 chr4 25873367 25873402 -129756718 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 782 16249 154 10 10 chr4 25873402 25873745 -129756375 + L1_Mus3 LINE L1 3852 4186 -1697 5 782 6994 115 7 6 chr4 25873753 25874915 -129755205 + L1_Mus3 LINE L1 5470 6633 -5 5 782 186 103 0 0 chr4 25875296 25875325 -129754795 + (TCTCCC)n Simple_repeat Simple_repeat 3 31 0 5 782 22 88 0 0 chr4 25875752 25875809 -129754311 + AT_rich Low_complexity Low_complexity 1 57 0 5 782 746 154 0 14 chr4 25875826 25875971 -129754149 + Lx5 LINE L1 4546 4688 -1192 5 782 597 28 0 0 chr4 25876178 25876249 -129753871 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 5 782 22 0 0 0 chr4 25876596 25876618 -129753502 + AT_rich Low_complexity Low_complexity 1 22 0 5 782 4001 218 45 27 chr4 25876630 25877663 -129752457 + Lx5 LINE L1 4691 5742 -135 5 782 6042 92 27 1 chr4 25877659 25878555 -129751565 - L1_Mur1 LINE L1 -1367 4519 3601 5 782 4218 108 33 3 chr4 25878549 25879210 -129750910 + L1_Mur1 LINE L1 4509 5189 -697 5 782 6253 136 26 11 chr4 25879212 25880235 -129749885 + Lx3A LINE L1 5934 6972 -9 5 782 479 202 0 8 chr4 25880258 25880383 -129749737 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 782 3079 292 55 84 chr4 25880383 25881700 -129748420 + Lx5 LINE L1 5731 7032 -18 5 782 246 62 0 0 chr4 25882895 25882927 -129747193 + (T)n Simple_repeat Simple_repeat 1 32 0 5 782 621 298 52 14 chr4 25883765 25883976 -129746144 + MLT1A0 LTR MaLR 147 365 0 5 782 360 139 175 12 chr4 25885525 25885605 -129744515 + Lx9 LINE L1 7244 7336 -308 5 782 24391 29 3 4 chr4 25885611 25890082 -129740038 + L1Md_A LINE L1 411 4872 -1011 5 782 2000 57 96 3 chr4 25890082 25890364 -129739756 - L1Md_F2 LINE L1 0 6582 6275 5 782 955 155 26 0 chr4 25890576 25890731 -129739389 - Lx3B LINE L1 -406 6567 6409 5 782 288 313 123 47 chr4 25890803 25890974 -129739146 - MER67D LTR ERV1 -247 267 84 5 782 27 49 0 0 chr4 25891393 25891434 -129738686 + AT_rich Low_complexity Low_complexity 1 41 0 5 782 343 189 122 0 chr4 25891772 25891846 -129738274 + PB1D10 SINE Alu 8 90 -27 5 782 1225 116 30 0 chr4 25892328 25892526 -129737594 + Lx LINE L1 6444 6647 -7 5 782 230 319 75 8 chr4 25892607 25892727 -129737393 - L1_Mur3 LINE L1 -1289 4591 4464 5 782 1018 147 13 0 chr4 25893380 25893537 -129736583 + B2_Mm2 SINE B2 3 161 -34 5 782 387 0 0 0 chr4 25893537 25893580 -129736540 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 5 782 316 309 9 18 chr4 25893713 25893825 -129736295 + GA-rich Low_complexity Low_complexity 2 112 0 5 782 1391 310 36 33 chr4 25894593 25895206 -129734914 - RMER15-int LTR ERVL -235 4764 4150 5 782 658 350 19 29 chr4 25896051 25896363 -129733757 - RMER15 LTR ERVL -15 560 252 5 782 532 355 30 30 chr4 25896508 25896839 -129733281 - RMER15-int LTR ERVL -3514 1485 1155 5 782 1128 314 45 3 chr4 25896971 25897351 -129732769 + MTD LTR MaLR 10 405 -14 5 782 243 0 0 0 chr4 25897356 25897383 -129732737 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 782 746 189 8 17 chr4 25898422 25898571 -129731549 + ORR1B2 LTR MaLR 224 365 -14 5 782 7177 84 5 2 chr4 25898738 25899936 -129730184 - L1_Mus2 LINE L1 0 6566 5410 5 782 552 286 58 108 chr4 25899936 25900462 -129729658 + RLTR12A LTR ERVK 6 500 -27 5 782 378 61 0 0 chr4 25901658 25901707 -129728413 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 782 7269 133 21 3 chr4 25901720 25902912 -129727208 - Lx3_Mus LINE L1 -11 6998 5786 5 782 4126 112 10 7 chr4 25903267 25903875 -129726245 + Lx3_Mus LINE L1 6379 6988 -21 5 782 213 39 0 0 chr4 25903875 25903901 -129726219 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 782 5358 89 30 37 chr4 25903922 25904011 -129726109 - RLTR13C2 LTR ERVK -2 806 726 5 782 4813 38 0 12 chr4 25904011 25904602 -129725518 + L1Md_F2 LINE L1 5998 6581 -1 5 782 5358 89 30 37 chr4 25904602 25905324 -129724796 - RLTR13C2 LTR ERVK -83 725 1 5 782 2412 59 9 6 chr4 25905403 25905726 -129724394 + ORR1A1 LTR MaLR 1 324 -22 5 782 352 387 59 19 chr4 25905862 25906133 -129723987 - MT2A LTR ERVL -241 292 11 5 782 489 290 13 25 chr4 25907114 25907273 -129722847 - RMER30 DNA MER1_type -45 157 1 5 782 324 102 0 0 chr4 25907759 25907808 -129722312 + (CAATA)n Simple_repeat Simple_repeat 4 52 0 5 782 297 328 23 0 chr4 25907852 25907980 -129722140 + Lx6 LINE L1 7325 7455 -5 5 782 22 56 0 0 chr4 25908574 25908610 -129721510 + AT_rich Low_complexity Low_complexity 1 36 0 5 782 458 276 113 79 chr4 25909013 25909190 -129720930 - B3A SINE B2 -9 186 4 5 782 186 143 0 0 chr4 25910583 25910618 -129719502 + (TATAA)n Simple_repeat Simple_repeat 4 38 0 5 782 202 216 20 0 chr4 25912286 25912337 -129717783 + GA-rich Low_complexity Low_complexity 1 52 0 5 782 2021 226 52 22 chr4 25912414 25912911 -129717209 - Lx5 LINE L1 -6 7044 6533 5 782 203 326 95 42 chr4 25913045 25913234 -129716886 + MIRb SINE MIR 56 254 -14 5 782 3996 106 22 10 chr4 25913958 25914559 -129715561 - L1_Mus3 LINE L1 -9 6629 6022 5 782 3127 236 38 25 chr4 25914744 25915544 -129714576 + Lx2B LINE L1 6178 6987 -13 5 782 430 308 145 9 chr4 25915860 25916192 -129713928 + L1M4c LINE L1 1931 2199 -4651 5 782 36 70 0 0 chr4 25916943 25917014 -129713106 + AT_rich Low_complexity Low_complexity 1 71 0 5 782 1095 79 0 0 chr4 25917215 25917354 -129712766 + B1_Mus1 SINE Alu 2 140 -8 5 782 22 0 0 0 chr4 25917406 25917428 -129712692 + AT_rich Low_complexity Low_complexity 1 22 0 5 782 511 207 15 0 chr4 25919307 25919442 -129710678 - Lx9 LINE L1 -5 7639 7503 5 782 5424 225 82 26 chr4 25919474 25921444 -129708676 + Lx4A LINE L1 4487 6635 -423 5 782 2722 46 10 68 chr4 25921444 25921839 -129708281 + L1_Mus2 LINE L1 6195 6566 0 5 782 3749 262 106 38 chr4 25921839 25922262 -129707858 + Lx4A LINE L1 6636 7033 -25 5 782 273 57 0 0 chr4 25922263 25922298 -129707822 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 782 726 264 97 31 chr4 25922303 25922530 -129707590 + Lx9 LINE L1 7155 7396 -248 5 782 323 93 0 0 chr4 25922530 25922573 -129707547 - L1_Mur3 LINE L1 -1384 4496 4454 5 782 4564 168 41 7 chr4 25922572 25922696 -129707424 - L1_Mur2 LINE L1 -3692 2185 2051 5 782 465 19 0 0 chr4 25922696 25922750 -129707370 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 782 4564 172 34 10 chr4 25922750 25923817 -129706303 - L1_Mur2 LINE L1 -3827 2050 905 5 782 23 0 0 0 chr4 25924812 25924835 -129705285 + AT_rich Low_complexity Low_complexity 1 23 0 5 782 285 284 84 66 chr4 25928554 25928720 -129701400 + B2_Mm2 SINE B2 6 174 -21 5 782 377 140 21 0 chr4 25928721 25928814 -129701306 + (TATATG)n Simple_repeat Simple_repeat 3 97 0 5 782 561 347 75 54 chr4 25929339 25929765 -129700355 - LTR40a LTR ERVL -74 445 11 5 782 604 318 56 10 chr4 25930204 25930401 -129699719 + B3 SINE B2 1 206 -10 5 782 25 31 0 0 chr4 25930401 25930433 -129699687 + AT_rich Low_complexity Low_complexity 1 32 0 5 782 26 0 0 0 chr4 25930457 25930483 -129699637 + AT_rich Low_complexity Low_complexity 1 26 0 5 782 336 265 126 30 chr4 25930840 25930980 -129699140 + MLT2B4 LTR ERVL 11 162 -252 5 782 4286 179 81 63 chr4 25931672 25932392 -129697728 + L1_Mus1 LINE L1 190 940 -5676 5 782 1068 98 14 0 chr4 25932392 25932535 -129697585 + B1_Mm SINE Alu 1 145 -2 6 782 4286 132 5 3 chr4 25932535 25933088 -129697032 + L1_Mus1 LINE L1 941 1482 -4401 5 782 414 0 0 0 chr4 25933088 25933134 -129696986 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 6 782 3389 103 0 0 chr4 25933134 25933629 -129696491 + L1_Mus1 LINE L1 1966 2460 -3423 5 782 9501 104 53 6 chr4 25933654 25935902 -129694218 + L1_Mus1 LINE L1 4186 6565 -2 5 782 185 0 40 0 chr4 25935921 25935946 -129694174 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 782 3707 38 0 0 chr4 25936017 25936465 -129693655 - L1Md_A LINE L1 -1 6581 6134 6 782 447 322 43 38 chr4 25936465 25936649 -129693471 + B4 SINE B4 80 264 -28 6 782 307 20 80 0 chr4 25936649 25936699 -129693421 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 782 21 0 0 0 chr4 25936731 25936752 -129693368 + AT_rich Low_complexity Low_complexity 1 21 0 6 782 372 307 63 15 chr4 25936754 25936904 -129693216 - B4A SINE B4 -128 164 5 6 782 317 268 14 0 chr4 25938226 25938297 -129691823 + ID4_ SINE ID 10 81 -2 6 782 4472 234 61 19 chr4 25938859 25939592 -129690528 - Lx5 LINE L1 -8 7042 6263 6 782 2020 192 64 18 chr4 25939592 25940095 -129690025 - RLTR11A2 LTR ERVK 0 527 2 6 782 4472 234 61 19 chr4 25940095 25940522 -129689598 - Lx5 LINE L1 -788 6262 5833 6 782 361 308 39 0 chr4 25940987 25941091 -129689029 + B4 SINE B4 1 108 -184 6 782 391 327 94 22 chr4 25941129 25941585 -129688535 - L1M2 LINE L1 -1089 5054 4566 6 782 4393 114 18 9 chr4 25942299 25942956 -129687164 - Lx LINE L1 -366 6288 5626 6 782 1964 138 129 3 chr4 25942952 25943301 -129686819 + Lx LINE L1 5230 5622 -261 6 782 3054 160 89 28 chr4 25943284 25943858 -129686262 + Lx4A LINE L1 6448 7056 -2 6 782 277 333 0 0 chr4 25944279 25944357 -129685763 + ID_B1 SINE B4 81 158 -66 6 782 210 318 56 104 chr4 25944407 25944437 -129685683 + B1F SINE Alu 12 108 -41 6 782 234 337 0 115 chr4 25944437 25944541 -129685579 + ID_B1 SINE B4 125 216 -8 6 782 264 206 96 67 chr4 25945504 25945608 -129684512 - MTE2b LTR MaLR 0 379 273 6 782 457 282 48 27 chr4 25945682 25945828 -129684292 - MTE2b LTR MaLR -230 149 1 6 782 1747 188 251 21 chr4 25946098 25946358 -129683762 - RMER6C LTR ERVK 0 690 351 6 782 675 75 0 0 chr4 25946358 25946452 -129683668 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 782 1747 188 251 21 chr4 25946452 25946752 -129683368 - RMER6C LTR ERVK -340 350 1 6 782 323 129 0 31 chr4 25946784 25946848 -129683272 + GA-rich Low_complexity Low_complexity 1 62 0 6 782 584 343 62 29 chr4 25947190 25947574 -129682546 + L1MD LINE L1 3830 4226 -1920 6 782 663 313 122 52 chr4 25947576 25947920 -129682200 - MTEa LTR MaLR -2 377 10 6 782 2084 220 94 53 chr4 25948057 25948639 -129681481 - RLTR40 LTR ERVK -7 810 205 6 782 3766 218 40 13 chr4 25948639 25949968 -129680152 + Lx6 LINE L1 4969 6362 -688 6 782 492 350 0 27 chr4 25950002 25950187 -129679933 + Lx6 LINE L1 6506 6685 -365 6 97 37486 29 0 6 chr4 25950255 25956226 -129673894 - L1Md_T LINE L1 0 6582 654 6 783 189 0 0 0 chr4 25956433 25956454 -129673666 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 783 25 0 0 0 chr4 25957166 25957191 -129672929 + AT_rich Low_complexity Low_complexity 1 25 0 6 783 1006 324 60 10 chr4 25957620 25957930 -129672190 - MTD LTR MaLR -16 403 85 6 783 1373 235 188 2 chr4 25957930 25958378 -129671742 - MT2A LTR ERVL -2 531 1 6 783 1006 324 60 10 chr4 25958378 25958451 -129671669 - MTD LTR MaLR -335 84 2 6 783 507 246 123 39 chr4 25958528 25958887 -129671233 + L1_Mur3 LINE L1 1203 1591 -4289 6 783 574 317 38 5 chr4 25958906 25959115 -129671005 + Lx6 LINE L1 6916 7131 -329 6 783 1660 177 46 37 chr4 25959121 25959482 -129670638 - RMER16 LTR ERVK 0 533 1 6 783 713 312 73 16 chr4 25959489 25959792 -129670328 + Lx6 LINE L1 7139 7458 -2 6 783 1428 244 86 14 chr4 25959822 25960321 -129669799 + L1_Mur3 LINE L1 2179 2713 -3167 6 783 2605 209 72 7 chr4 25960343 25961056 -129669064 + L1_Mur3 LINE L1 3440 4198 -1682 6 783 1193 297 36 12 chr4 25961056 25961390 -129668730 + MTC LTR MaLR 71 412 -9 6 783 29940 85 8 1 chr4 25961390 25966620 -129663500 + L1Md_F2 LINE L1 318 5584 -299 6 783 7900 51 13 0 chr4 25966622 25967603 -129662517 + L1Md_F2 LINE L1 5587 6580 -2 6 783 2266 259 48 8 chr4 25967617 25968283 -129661837 + Lx7 LINE L1 6616 7308 -388 6 783 1175 134 123 5 chr4 25968298 25968501 -129661619 + RMER6C LTR ERVK 1 227 -493 6 783 203 140 20 0 chr4 25968507 25968557 -129661563 + (CAGTT)n Simple_repeat Simple_repeat 2 52 0 6 783 1220 146 25 0 chr4 25968571 25968770 -129661350 + RMER6C LTR ERVK 487 690 0 6 783 394 215 0 4 chr4 25968772 25968846 -129661274 - tRNA-Lys-AAG tRNA tRNA 0 76 5 6 783 24 0 0 0 chr4 25968858 25968882 -129661238 + AT_rich Low_complexity Low_complexity 1 24 0 6 783 210 37 0 0 chr4 25968906 25968933 -129661187 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 783 266 293 0 17 chr4 25969023 25969141 -129660979 + Lx7 LINE L1 7563 7678 -18 6 783 21 95 0 0 chr4 25969568 25969631 -129660489 + AT_rich Low_complexity Low_complexity 1 63 0 6 783 435 352 76 13 chr4 25970520 25970756 -129659364 + L2 LINE L2 1237 1487 -1932 6 783 420 331 99 12 chr4 25970772 25971096 -129659024 - MER45B DNA Tip100 0 1040 689 6 783 22 0 0 0 chr4 25971096 25971118 -129659002 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 5229 113 60 19 chr4 25971122 25972027 -129658093 - Lx3A LINE L1 -109 6872 5931 6 783 3322 105 0 68 chr4 25972035 25972155 -129657965 - L1_Mur1 LINE L1 -233 5653 5538 6 783 4563 68 3 3 chr4 25972155 25972742 -129657378 + LTRIS_Mus LTR ERV1 1 587 0 6 783 3322 105 0 68 chr4 25972742 25973213 -129656907 - L1_Mur1 LINE L1 -349 5537 5102 6 783 249 200 0 36 chr4 25973461 25973544 -129656576 + A-rich Low_complexity Low_complexity 5 84 0 6 783 3147 112 8 0 chr4 25973603 25974087 -129656033 - L1_Mus1 LINE L1 -212 5671 5184 6 783 6030 83 14 3 chr4 25974086 25974948 -129655172 + L1_Mus1 LINE L1 5682 6552 -15 6 783 585 282 68 50 chr4 25974949 25975246 -129654874 - Lx5 LINE L1 -574 6886 6455 6 783 408 279 10 105 chr4 25975256 25975456 -129654664 - Lx5 LINE L1 -1367 6093 5913 6 783 5724 131 80 7 chr4 25975484 25976529 -129653591 - Lx LINE L1 -2 6652 5532 6 783 1972 184 2 15 chr4 25976527 25976935 -129653185 + L1_Mm LINE L1 3756 4158 -1725 6 783 6211 220 41 59 chr4 25976931 25979004 -129651116 - Lx5 LINE L1 -1123 5927 3891 6 783 39035 12 1 6 chr4 25979024 25985599 -129644521 - L1Md_A LINE L1 0 6582 43 6 783 520 219 7 40 chr4 25985597 25985749 -129644371 - Lx5 LINE L1 -1980 3900 3754 6 783 1970 210 41 25 chr4 25985755 25986111 -129644009 - Lx5 LINE L1 -2522 3358 2989 6 783 514 0 30 0 chr4 25986111 25986177 -129643943 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 6 783 1970 210 41 25 chr4 25986177 25986425 -129643695 - Lx5 LINE L1 -2892 2988 2744 6 783 1675 229 12 5 chr4 25986993 25987422 -129642698 - Lx5 LINE L1 -3299 2581 2150 6 783 33369 74 6 6 chr4 25987421 25993590 -129636530 - L1Md_F3 LINE L1 0 6584 419 6 783 2089 75 0 11 chr4 25993593 25993875 -129636245 - L1Md_F2 LINE L1 -12 6570 6292 6 783 6314 164 59 6 chr4 25993875 25995000 -129635120 - L1_Mur2 LINE L1 -63 5814 4622 6 783 729 34 0 0 chr4 25995000 25995088 -129635032 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 6 783 6314 164 59 6 chr4 25995088 25995247 -129634873 - L1_Mur2 LINE L1 -1256 4621 4463 6 783 287 354 114 62 chr4 25995248 25995654 -129634466 + RMER13A LTR ERVK 229 681 -227 6 783 2342 190 41 8 chr4 25995749 25996233 -129633887 - RMER6D LTR ERVK -220 500 1 6 783 383 341 101 35 chr4 25996515 25996801 -129633319 - MER45B DNA Tip100 -720 320 16 6 783 492 322 109 55 chr4 25997336 25997452 -129632668 + MLT2D LTR ERVL 5 124 -290 6 783 466 320 25 44 chr4 25997452 25997612 -129632508 + RSINE1 SINE B4 1 157 -8 6 783 492 322 109 55 chr4 25997612 25997824 -129632296 + MLT2D LTR ERVL 125 351 -63 6 783 482 361 65 36 chr4 25997877 25998213 -129631907 + L2 LINE L2 2090 2435 -984 6 783 1142 121 134 25 chr4 25998350 25998386 -129631734 - Lx3C LINE L1 -2 6974 6944 6 783 3302 48 2 0 chr4 25998386 25998781 -129631339 + MTA_Mm LTR MaLR 1 396 0 6 783 1142 121 134 25 chr4 25998781 25998982 -129631138 - Lx3C LINE L1 -33 6943 6711 6 783 380 211 32 16 chr4 25999065 25999190 -129630930 + Lx9 LINE L1 7517 7643 -1 6 783 21 36 0 0 chr4 25999865 25999893 -129630227 + AT_rich Low_complexity Low_complexity 1 28 0 6 783 437 173 164 0 chr4 26000023 26000127 -129629993 - L1_Mur1 LINE L1 -518 5368 5248 1 783 9205 103 26 38 chr4 26000120 26001633 -129628487 + L1_Mur1 LINE L1 3740 5235 -651 1 783 263 333 54 9 chr4 26001635 26001859 -129628261 - L1MC1 LINE L1 -343 5990 5757 2 783 254 50 0 24 chr4 26002094 26002135 -129627985 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 783 752 186 0 8 chr4 26002135 26002265 -129627855 - B1_Mur4 SINE Alu -15 135 7 4 783 618 289 0 21 chr4 26002302 26002447 -129627673 - B1_Mur4 SINE Alu 0 150 9 5 783 308 345 75 22 chr4 26002629 26002949 -129627171 - L1MC1 LINE L1 -2120 5665 5329 2 783 435 68 0 0 chr4 26002956 26003015 -129627105 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 6 783 371 290 76 56 chr4 26003073 26003558 -129626562 - L1MC1 LINE L1 -853 5293 4799 2 783 369 0 0 0 chr4 26003782 26003823 -129626297 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 783 670 32 21 0 chr4 26003902 26003995 -129626125 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 8 783 2474 133 55 20 chr4 26004522 26004960 -129625160 - Lx2 LINE L1 0 6997 6545 9 783 3469 181 40 7 chr4 26004960 26005712 -129624408 + L1_Mur1 LINE L1 2968 3744 -2142 1 783 882 199 27 0 chr4 26005751 26005919 -129624201 + Lx3C LINE L1 6712 6901 -99 1 783 301 387 21 26 chr4 26006338 26006529 -129623591 + L1MC4a LINE L1 7442 7631 -251 1 783 6107 101 5 14 chr4 26006761 26007657 -129622463 + Lx3_Mus LINE L1 6107 6993 -16 1 783 2889 151 22 11 chr4 26007681 26007835 -129622285 + L1_Mur2 LINE L1 3694 3855 -2022 1 783 189 0 0 0 chr4 26007835 26007856 -129622264 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 783 2889 151 22 11 chr4 26007856 26008249 -129621871 + L1_Mur2 LINE L1 3856 4247 -1630 1 783 2660 54 39 0 chr4 26008740 26009073 -129621047 + ORR1A1 LTR MaLR 1 346 0 1 783 380 296 128 41 chr4 26009264 26009593 -129620527 - MTC LTR MaLR 0 421 6 1 783 735 184 27 0 chr4 26009899 26010046 -129620074 + Lx3C LINE L1 5891 6041 -935 1 783 1667 132 112 10 chr4 26010046 26010359 -129619761 + RLTR26 LTR ERVK 1 345 -297 1 783 566 232 9 0 chr4 26010360 26010472 -129619648 + Lx3C LINE L1 6656 6768 -208 1 783 1894 252 131 90 chr4 26010530 26011376 -129618744 - RMER17B LTR ERVK -77 881 1 2 783 812 222 77 10 chr4 26011376 26011572 -129618548 + Lx3C LINE L1 6765 6973 -3 1 783 300 53 0 0 chr4 26011573 26011611 -129618509 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 783 551 342 15 45 chr4 26011628 26011830 -129618290 + B3A SINE B2 3 198 0 2 783 219 274 0 0 chr4 26011832 26011883 -129618237 + GA-rich Low_complexity Low_complexity 2 52 0 2 783 202 274 0 40 chr4 26011928 26012004 -129618116 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2 783 246 254 349 5 chr4 26012093 26012251 -129617869 + L1M5 LINE L1 5410 5618 -561 2 783 318 337 107 34 chr4 26012256 26012434 -129617686 + MLT1C LTR MaLR 1 191 -276 2 783 21 0 0 0 chr4 26012810 26012831 -129617289 + AT_rich Low_complexity Low_complexity 1 21 0 2 783 1869 148 10 0 chr4 26012859 26013163 -129616957 - Lx4B LINE L1 -429 6629 6323 2 783 1857 219 23 25 chr4 26013165 26013606 -129616514 + Lx4B LINE L1 6614 7053 -5 2 783 7670 28 4 21 chr4 26014695 26015636 -129614484 + L1Md_F2 LINE L1 5646 6570 -12 2 783 23 0 0 0 chr4 26015869 26015892 -129614228 + AT_rich Low_complexity Low_complexity 1 23 0 3 783 320 298 63 24 chr4 26016059 26016186 -129613934 - Lx9 LINE L1 -1739 5905 5774 3 783 620 131 15 15 chr4 26016671 26016803 -129613317 - L1_Mus3 LINE L1 0 6638 6507 3 783 41 36 0 0 chr4 26017127 26017182 -129612938 + AT_rich Low_complexity Low_complexity 1 55 0 3 783 897 131 140 17 chr4 26017360 26017476 -129612644 - L1_Mur2 LINE L1 -1463 4414 4290 3 783 564 53 0 0 chr4 26017476 26017552 -129612568 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 783 897 131 140 17 chr4 26017552 26017613 -129612507 - L1_Mur2 LINE L1 -1588 4289 4216 3 783 807 177 106 63 chr4 26017615 26017867 -129612253 - ORR1A4 LTR MaLR 0 394 148 3 783 1914 157 16 59 chr4 26017897 26018269 -129611851 - RLTR19 LTR ERVK -143 356 1 3 783 363 96 0 0 chr4 26018283 26018335 -129611785 - L1_Mur2 LINE L1 -1673 4204 4153 3 783 318 26 0 0 chr4 26018335 26018374 -129611746 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 783 7445 59 21 3 chr4 26018374 26019546 -129610574 - L1Md_F2 LINE L1 -23 6559 5366 4 783 3511 171 28 40 chr4 26019539 26020288 -129609832 - L1_Mur2 LINE L1 -1713 4164 3425 3 783 3768 229 51 7 chr4 26020284 26021112 -129609008 + Lx5 LINE L1 6187 7050 0 4 783 23 0 0 0 chr4 26021504 26021527 -129608593 + AT_rich Low_complexity Low_complexity 1 23 0 4 783 24693 75 3 5 chr4 26021992 26026040 -129604080 - L1Md_F2 LINE L1 -2 6580 2541 4 783 3177 189 37 30 chr4 26026189 26026861 -129603259 + RLTR33 LTR ERVK 1 677 -1 4 783 46 19 0 0 chr4 26027044 26027097 -129603023 + AT_rich Low_complexity Low_complexity 1 53 0 4 783 1948 188 186 43 chr4 26027188 26027789 -129602331 + RMER6C LTR ERVK 1 687 -3 4 783 519 17 0 0 chr4 26028007 26028067 -129602053 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 783 928 318 102 55 chr4 26028137 26028669 -129601451 - RMER15 LTR ERVL -18 557 1 4 783 252 158 0 0 chr4 26030450 26030507 -129599613 + (CAGAGA)n Simple_repeat Simple_repeat 6 62 0 4 783 219 69 0 0 chr4 26030504 26030533 -129599587 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 783 255 157 0 0 chr4 26030532 26030583 -129599537 + GA-rich Low_complexity Low_complexity 2 52 0 5 783 698 292 15 15 chr4 26033779 26033984 -129596136 - B3 SINE B2 -10 206 2 5 783 766 0 0 21 chr4 26034061 26034157 -129595963 + (TTC)n Simple_repeat Simple_repeat 2 95 0 5 783 1295 242 15 20 chr4 26034804 26035146 -129594974 - RLTR15 LTR ERVK -19 340 1 5 783 2212 225 57 30 chr4 26035310 26035850 -129594270 - Lx3C LINE L1 -2 6974 6420 5 783 4796 67 9 3 chr4 26035905 26036535 -129593585 - L1_Mus2 LINE L1 0 6566 5933 5 783 502 83 0 14 chr4 26036535 26036608 -129593512 + Lx3C LINE L1 6350 6421 -555 5 783 35062 55 11 9 chr4 26036645 26041912 -129588208 + Lx5 LINE L1 268 5589 -297 5 783 8394 35 0 0 chr4 26041912 26042908 -129587212 + L1Md_T LINE L1 5587 6582 0 5 783 35062 108 52 8 chr4 26042908 26043254 -129586866 + Lx5 LINE L1 5590 6009 -1044 5 783 279 0 0 0 chr4 26043450 26043481 -129586639 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 783 649 71 30 0 chr4 26043485 26043584 -129586536 + (TATG)n Simple_repeat Simple_repeat 2 103 0 6 783 5396 166 36 8 chr4 26044138 26044572 -129585548 - L1_Mm LINE L1 -113 5770 5315 6 783 3900 142 11 16 chr4 26044572 26045217 -129584903 - Lx LINE L1 -6 6648 6007 6 783 5396 166 36 8 chr4 26045217 26045771 -129584349 - L1_Mm LINE L1 -569 5314 4755 6 783 5598 114 30 10 chr4 26045771 26046640 -129583480 + Lx LINE L1 5767 6652 -2 6 783 3745 219 63 18 chr4 26047727 26048596 -129581524 + RMER13B LTR ERVK 1 908 0 6 783 483 175 56 0 chr4 26049202 26049328 -129580792 + Lx9 LINE L1 7503 7635 -9 6 783 624 304 9 24 chr4 26049417 26049629 -129580491 + Lx8 LINE L1 6246 6454 -1019 6 783 2615 103 2 51 chr4 26049676 26049869 -129580251 + MTB_Mm LTR MaLR 3 195 -212 6 783 1841 114 9 83 chr4 26049869 26050194 -129579926 + Lx2 LINE L1 6693 6993 -4 6 783 2615 103 2 51 chr4 26050194 26050409 -129579711 + MTB_Mm LTR MaLR 196 391 -16 6 783 28 61 0 0 chr4 26050524 26050573 -129579547 + AT_rich Low_complexity Low_complexity 1 49 0 7 783 1491 241 119 0 chr4 26051688 26052058 -129578062 + MTD LTR MaLR 1 414 -5 7 783 528 267 88 49 chr4 26052475 26052680 -129577440 + RMER20B LTR ERVK 152 364 -263 7 783 657 25 0 0 chr4 26052711 26052790 -129577330 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 783 347 308 57 57 chr4 26052792 26052916 -129577204 + RMER20B LTR ERVK 495 618 -9 7 783 30 0 0 0 chr4 26053029 26053059 -129577061 + AT_rich Low_complexity Low_complexity 1 30 0 7 783 3242 82 0 0 chr4 26053065 26053491 -129576629 - L1_Mus1 LINE L1 0 6567 6142 7 783 2489 90 12 0 chr4 26053491 26053834 -129576286 + L1_Mus1 LINE L1 5815 6161 -406 7 783 360 0 0 0 chr4 26053834 26053874 -129576246 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 783 2829 97 31 2 chr4 26053878 26054340 -129575780 - L1_Mus2 LINE L1 0 6566 6140 7 783 2773 88 33 29 chr4 26054341 26054760 -129575360 - L1_Mus3 LINE L1 -45 6593 6173 7 783 237 65 0 0 chr4 26054864 26054895 -129575225 + (A)n Simple_repeat Simple_repeat 1 31 0 7 783 774 316 104 25 chr4 26055256 26055613 -129574507 + Lx8 LINE L1 7089 7473 0 8 783 251 297 0 0 chr4 26055615 26055679 -129574441 + B4 SINE B4 77 140 -152 8 783 308 267 26 13 chr4 26055631 26055707 -129574413 + B1_Mus1 SINE Alu 9 85 -63 8 783 419 335 137 40 chr4 26056033 26056282 -129573838 - MT2A LTR ERVL -161 372 100 8 783 254 88 0 0 chr4 26056318 26056352 -129573768 - RLTR10B LTR ERVK 0 292 259 8 783 254 297 0 0 chr4 26056356 26056420 -129573700 + B4 SINE B4 77 140 -152 8 783 312 267 26 13 chr4 26056372 26056448 -129573672 + B1_Mus1 SINE Alu 9 85 -63 8 783 445 331 137 40 chr4 26056774 26057023 -129573097 - MT2A LTR ERVL -161 372 100 8 783 1044 205 130 49 chr4 26057059 26057366 -129572754 - IAPEY3_LTR LTR ERVK 0 332 1 8 783 470 31 16 0 chr4 26060830 26060894 -129569226 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 8 783 731 310 16 11 chr4 26061235 26061457 -129568663 + ID_B1 SINE B4 12 233 -59 9 783 432 268 26 56 chr4 26061871 26061943 -129568177 + Lx9 LINE L1 7322 7389 -255 9 783 2089 91 6 53 chr4 26061943 26062281 -129567839 + RLTRETN_Mm LTR ERVK 1 322 0 9 783 432 268 26 56 chr4 26062281 26062441 -129567679 + Lx9 LINE L1 7390 7547 -97 9 783 1184 292 92 9 chr4 26062568 26063279 -129566841 + Lx6 LINE L1 130 686 -7042 9 783 798 189 17 6 chr4 26063281 26063462 -129566658 + Lx6 LINE L1 4443 4625 -1255 9 783 1245 110 0 0 chr4 26063462 26063762 -129566358 + (GAAA)n Simple_repeat Simple_repeat 1 300 0 9 783 2758 114 0 0 chr4 26063764 26064175 -129565945 - L1_Mus3 LINE L1 -60 5823 5413 9 783 4603 112 48 12 chr4 26064175 26064898 -129565222 + L1_Mus3 LINE L1 5884 6632 -6 9 783 941 111 13 0 chr4 26064901 26065054 -129565066 + (GAAA)n Simple_repeat Simple_repeat 3 157 0 9 783 860 226 51 14 chr4 26065054 26065343 -129564777 + Lx6 LINE L1 4636 4930 -947 9 783 36449 15 2 10 chr4 26065382 26071082 -129559038 + L1Md_A LINE L1 1 5586 -297 9 783 8800 17 0 0 chr4 26071082 26072077 -129558043 + L1Md_A LINE L1 5587 6581 -1 9 783 228 250 0 15 chr4 26072083 26072148 -129557972 + Lx6 LINE L1 5007 5070 -807 9 783 3836 171 14 11 chr4 26072151 26072938 -129557182 - L1_Mur2 LINE L1 -251 5626 4838 9 783 839 193 0 25 chr4 26072932 26073134 -129556986 - L1_Mur2 LINE L1 -1978 3899 3703 9 783 4486 168 364 3 chr4 26073133 26074583 -129555537 + Lx2B LINE L1 3617 5589 -297 9 783 8025 47 5 4 chr4 26074583 26075577 -129554543 + L1Md_F2 LINE L1 5587 6581 -1 1 783 340 147 0 29 chr4 26075578 26075648 -129554472 + L1_Mur2 LINE L1 4667 4734 -1143 1 783 6142 70 10 0 chr4 26075662 26076472 -129553648 - L1_Mus1 LINE L1 0 6567 5750 1 783 686 106 0 0 chr4 26076472 26076576 -129553544 + Lx2B LINE L1 5820 5923 -1077 9 783 497 150 140 0 chr4 26076573 26076673 -129553447 + Lx2B LINE L1 6724 6837 -171 1 783 2080 136 6 3 chr4 26076673 26076997 -129553123 + ORR1A2 LTR MaLR 1 325 -2 1 783 7603 169 124 35 chr4 26076997 26078796 -129551324 + ORR1A2-int LTR MaLR 2 1963 0 1 783 2072 145 3 6 chr4 26078796 26079116 -129551004 + ORR1A2 LTR MaLR 1 319 -8 1 783 775 136 0 74 chr4 26079122 26079297 -129550823 + Lx2B LINE L1 6839 7000 0 1 783 1059 159 29 137 chr4 26079297 26079576 -129550544 - L1_Mur2 LINE L1 -4335 1542 1303 9 783 3129 65 0 8 chr4 26079576 26079978 -129550142 - L1_Mus1 LINE L1 0 6567 6169 1 783 2350 231 52 44 chr4 26079978 26080680 -129549440 - L1_Mur2 LINE L1 -4575 1302 584 9 783 581 249 12 0 chr4 26080668 26080837 -129549283 + Lx6 LINE L1 5165 5335 -545 9 783 1184 263 12 35 chr4 26080843 26081310 -129548810 + RLTR17 LTR ERVK 105 609 -83 1 783 2445 179 44 21 chr4 26081338 26081943 -129548177 + Lx6 LINE L1 5327 5945 -1515 9 783 232 236 78 11 chr4 26081945 26082035 -129548085 + Lx6 LINE L1 6074 6169 -1291 9 783 371 181 0 0 chr4 26082031 26082103 -129548017 + Lx6 LINE L1 5830 5901 -1559 1 783 451 356 7 29 chr4 26082175 26082311 -129547809 - RSINE1 SINE B4 -30 135 3 1 784 4731 154 82 25 chr4 26083432 26084375 -129545745 + RMER6-int LTR ERVK 59 1054 -2123 1 784 1027 122 92 0 chr4 26084401 26084597 -129545523 + RMER6-int LTR ERVK 2303 2516 -661 1 784 291 246 0 0 chr4 26084598 26084655 -129545465 + LSU-rRNA_Hsa rRNA rRNA 1777 1833 -3202 1 784 318 143 0 0 chr4 26084700 26084756 -129545364 + RMER6-int LTR ERVK 2592 2647 -530 1 784 483 316 18 88 chr4 26084725 26084853 -129545267 + RMER6-int LTR ERVK 4293 4413 -4546 1 784 741 23 0 0 chr4 26084853 26084940 -129545180 + (GAA)n Simple_repeat Simple_repeat 3 89 0 1 784 1365 213 18 47 chr4 26084940 26085235 -129544885 + RMER6-int LTR ERVK 2672 2916 -261 1 784 417 20 0 0 chr4 26085235 26085285 -129544835 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 784 1365 198 18 42 chr4 26085285 26085363 -129544757 + RMER6-int LTR ERVK 2917 2999 -178 1 784 618 156 103 86 chr4 26085365 26085540 -129544580 + Lx2 LINE L1 4593 4770 -1107 1 784 7676 158 36 5 chr4 26085526 26087510 -129542610 + Lx2 LINE L1 4957 6997 0 1 784 192 179 0 0 chr4 26087513 26087552 -129542568 + A-rich Low_complexity Low_complexity 1 39 0 1 784 634 231 52 0 chr4 26087555 26087689 -129542431 + RMER6D LTR ERVK 580 720 0 1 784 274 253 24 24 chr4 26088003 26088088 -129542032 - MTD LTR MaLR -1 420 336 1 784 1735 283 50 12 chr4 26088092 26088571 -129541549 + RLTR18B LTR ERVK 5 501 -11 1 784 375 127 0 0 chr4 26088571 26088634 -129541486 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 784 1242 288 21 12 chr4 26088634 26088965 -129541155 - MTD LTR MaLR -80 339 6 1 784 1496 298 62 77 chr4 26089043 26089744 -129540376 - MTD-int LTR MaLR -152 1106 417 1 784 669 193 108 76 chr4 26089744 26089929 -129540191 - URR1A DNA MER1_type 0 226 36 1 784 601 201 130 12 chr4 26089951 26090112 -129540008 - MTD-int LTR MaLR -847 411 232 1 784 851 216 169 33 chr4 26090122 26090482 -129539638 + RLTR9E LTR ERVK 1 409 0 1 784 1797 127 15 36 chr4 26090483 26090817 -129539303 + ETnERV2-int LTR ERVK 2 328 -2986 1 784 7483 149 5 2 chr4 26090821 26092036 -129538084 + ETnERV2-int LTR ERVK 437 1655 -1659 1 784 14957 191 30 19 chr4 26092262 26095932 -129534188 + ETnERV2-int LTR ERVK 1660 6227 -1179 1 784 2703 46 0 0 chr4 26095932 26096258 -129533862 - IAPEY2_LTR LTR ERVK 0 357 32 1 784 6182 114 38 1 chr4 26096268 26097164 -129532956 + ETnERV2-int LTR ERVK 6239 7167 -239 1 784 700 213 55 49 chr4 26097164 26097392 -129532728 + RLTR13B1 LTR ERVK 127 347 -475 1 784 1154 68 0 0 chr4 26097392 26097538 -129532582 + B1_Mm SINE Alu 2 147 0 1 784 270 311 71 111 chr4 26097538 26097562 -129532558 + RLTR13B1 LTR ERVK 348 369 -453 1 784 207 12 212 0 chr4 26097562 26097642 -129532478 + (CAAAC)n Simple_repeat Simple_repeat 3 99 0 1 784 297 173 281 14 chr4 26097668 26097806 -129532314 + RLTR13B1 LTR ERVK 361 535 -367 1 784 479 66 25 62 chr4 26097808 26097889 -129532231 + ETnERV2-int LTR ERVK 7329 7406 0 1 784 800 218 214 47 chr4 26097897 26098238 -129531882 + RLTR9E LTR ERVK 6 409 0 1 784 309 315 70 48 chr4 26098238 26098310 -129531810 - MTD-int LTR MaLR -1027 231 159 1 784 4794 121 119 6 chr4 26098310 26099124 -129530996 - RMER17A2 LTR ERVK 0 906 1 1 784 309 315 70 48 chr4 26099124 26099277 -129530843 - MTD-int LTR MaLR -1100 158 1 1 784 1150 275 101 16 chr4 26099277 26099631 -129530489 - MTD LTR MaLR -24 395 11 1 784 311 333 44 39 chr4 26100942 26101148 -129528972 + L1MA4 LINE L1 4863 5069 -1074 1 784 822 305 80 26 chr4 26101168 26102022 -129528098 + L1MA4 LINE L1 5117 6018 -282 1 784 1451 164 101 117 chr4 26102142 26102528 -129527592 + ORR1B1 LTR MaLR 15 394 0 1 784 29652 87 29 29 chr4 26102993 26104624 -129525496 - L1Md_F2 LINE L1 -12 6570 4902 1 784 246 252 50 93 chr4 26104624 26104764 -129525356 + MER72B LTR ERV1 280 413 -355 1 784 29652 87 29 29 chr4 26104764 26109005 -129521115 - L1Md_F2 LINE L1 -12 4901 561 1 784 516 292 132 24 chr4 26109071 26109404 -129520716 - ORR1D2 LTR MaLR -1 369 1 1 784 9614 34 11 21 chr4 26109469 26111343 -129518777 + L1Md_A LINE L1 1 1853 -4030 1 784 4328 12 2 24 chr4 26111343 26111847 -129518273 - MT2_Mm LTR ERVL 0 493 1 1 784 314 0 0 0 chr4 26111847 26111885 -129518235 - MERVL-int LTR ERVL 0 5485 5448 1 784 392 167 46 35 chr4 26111885 26111972 -129518148 - ORR1D2-int LTR MaLR -1323 640 553 1 784 47572 18 0 0 chr4 26111972 26117331 -129512789 - MERVL-int LTR ERVL -125 5360 1 1 784 4307 12 2 24 chr4 26117331 26117835 -129512285 - MT2_Mm LTR ERVL 0 493 1 1 784 32468 11 0 0 chr4 26117835 26121574 -129508546 + L1Md_A LINE L1 1849 5586 -297 1 784 8732 17 0 1 chr4 26121574 26122571 -129507549 + L1Md_A LINE L1 5587 6582 0 1 784 2371 108 138 9 chr4 26122598 26123019 -129507101 - IAPLTR2_Mm LTR ERVK 0 475 1 1 784 1231 249 21 66 chr4 26123284 26123691 -129506429 + RMER19C LTR ERVK 177 611 0 1 784 187 256 21 104 chr4 26124234 26124330 -129505790 + L4 LINE RTE 567 654 -1375 1 784 7052 77 14 19 chr4 26125537 26126787 -129503333 - L1_Mus2 LINE L1 -1 6565 5313 1 784 3097 138 2 0 chr4 26126784 26127270 -129502850 + L1_Mus2 LINE L1 4822 5308 -575 1 784 691 104 17 0 chr4 26128216 26128331 -129501789 + (TTTTC)n Simple_repeat Simple_repeat 2 118 0 1 784 22 0 0 0 chr4 26128589 26128611 -129501509 + AT_rich Low_complexity Low_complexity 1 22 0 1 784 209 119 24 0 chr4 26129096 26129138 -129500982 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 784 273 302 100 8 chr4 26129151 26129271 -129500849 + MLT1C LTR MaLR 44 174 -293 1 784 2668 64 3 14 chr4 26129337 26129687 -129500433 + ORR1A1 LTR MaLR 1 346 0 1 784 3173 249 43 58 chr4 26130003 26131099 -129499021 + Lx9 LINE L1 6564 7642 -2 1 784 3674 122 31 0 chr4 26134248 26134820 -129495300 + Lx LINE L1 6058 6647 -7 1 784 327 25 0 0 chr4 26134868 26134908 -129495212 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 784 636 48 0 0 chr4 26134908 26134991 -129495129 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 784 4612 38 0 2 chr4 26135256 26135811 -129494309 - L1Md_F2 LINE L1 -4 6578 6025 1 784 194 0 39 0 chr4 26135832 26135858 -129494262 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 784 265 358 42 9 chr4 26135905 26136119 -129494001 - Lx9 LINE L1 -237 7407 7187 1 784 302 113 16 0 chr4 26136122 26136184 -129493936 - Lx LINE L1 -1 6653 6591 1 784 4347 159 8 5 chr4 26136184 26136961 -129493159 + L1_Mur2 LINE L1 3704 4482 -1395 1 784 183 80 0 0 chr4 26136966 26136991 -129493129 + (T)n Simple_repeat Simple_repeat 1 25 0 1 784 891 258 0 45 chr4 26136993 26137237 -129492883 - Lx9 LINE L1 -456 7188 6956 1 784 232 204 74 156 chr4 26137238 26137360 -129492760 + RLTR33 LTR ERVK 168 279 -399 1 784 1251 291 39 29 chr4 26137365 26137776 -129492344 - Lx9 LINE L1 -829 6815 6401 1 784 261 0 0 0 chr4 26137850 26137879 -129492241 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1 784 288 0 0 0 chr4 26138527 26138559 -129491561 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 784 7552 78 3 2 chr4 26139367 26140649 -129489471 + L1_Mus1 LINE L1 5286 6567 0 1 784 326 310 87 72 chr4 26140718 26141052 -129489068 - RMER10A LTR ERVL -25 417 79 1 784 1807 228 30 95 chr4 26141220 26141744 -129488376 + RMER20B LTR ERVK 51 540 -87 1 784 325 270 55 8 chr4 26141948 26142075 -129488045 + GA-rich Low_complexity Low_complexity 2 134 0 1 784 279 173 0 0 chr4 26142075 26142156 -129487964 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 1 784 538 265 103 0 chr4 26142236 26142372 -129487748 - Lx8 LINE L1 -223 7250 7101 1 784 642 60 0 0 chr4 26142468 26142551 -129487569 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 784 235 304 0 0 chr4 26142562 26142618 -129487502 + polypyrimidine Low_complexity Low_complexity 3 58 0 1 784 38 0 0 0 chr4 26142622 26142660 -129487460 + AT_rich Low_complexity Low_complexity 1 38 0 1 784 443 319 13 84 chr4 26143118 26143299 -129486821 + Lx6 LINE L1 5489 5664 -183 1 784 2418 211 100 83 chr4 26143299 26143581 -129486539 + RMER6D LTR ERVK 1 338 -382 1 784 432 0 0 0 chr4 26143581 26143629 -129486491 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 784 2418 211 100 83 chr4 26143629 26144054 -129486066 + RMER6D LTR ERVK 339 719 -1 1 784 443 319 13 84 chr4 26144054 26144183 -129485937 + Lx6 LINE L1 5665 5777 -70 1 784 1134 296 46 38 chr4 26144190 26144384 -129485736 - ORR1D2 LTR MaLR 0 370 163 1 784 2637 92 2 37 chr4 26144384 26144792 -129485328 + Lx LINE L1 6261 6654 0 1 784 1134 296 46 38 chr4 26144792 26144944 -129485176 - ORR1D2 LTR MaLR -208 162 21 1 784 290 268 87 25 chr4 26144955 26145137 -129484983 + Lx6 LINE L1 5802 5997 -1647 1 784 351 273 21 0 chr4 26145323 26145466 -129484654 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 784 2229 75 43 3 chr4 26145466 26145710 -129484410 - Lx3_Mus LINE L1 -843 6166 5909 1 784 180 0 0 0 chr4 26145710 26145730 -129484390 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 784 2229 91 36 10 chr4 26145730 26145824 -129484296 - Lx3_Mus LINE L1 -1101 5908 5815 1 784 29 60 0 0 chr4 26145839 26145889 -129484231 + AT_rich Low_complexity Low_complexity 1 50 0 1 784 291 219 37 0 chr4 26146068 26146150 -129483970 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 784 475 171 62 9 chr4 26146150 26146168 -129483952 + RMER1A Other Other 898 914 -116 1 784 279 0 0 0 chr4 26146168 26146199 -129483921 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 784 480 160 3 1 chr4 26146199 26146292 -129483828 + RMER1B Other Other 915 1052 -14 1 784 831 256 0 16 chr4 26146309 26146492 -129483628 + ORR1D1 LTR MaLR 195 374 0 1 784 525 324 44 6 chr4 26146494 26146677 -129483443 - ERVL-int LTR ERVL -2294 3463 3274 1 784 579 254 279 27 chr4 26146677 26146958 -129483162 - ORR1E LTR MaLR -7 352 1 1 784 6701 144 14 5 chr4 26147113 26148952 -129481168 + Lx LINE L1 4789 6645 -9 1 784 226 170 0 0 chr4 26149827 26149874 -129480246 - Lx2A LINE L1 -3 7005 6959 1 784 495 0 0 0 chr4 26150907 26150962 -129479158 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 784 285 75 0 0 chr4 26151965 26152005 -129478115 + (TAG)n Simple_repeat Simple_repeat 2 41 0 1 784 203 208 19 0 chr4 26153000 26153053 -129477067 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 784 2241 188 54 35 chr4 26153737 26154254 -129475866 - RLTR11A2 LTR ERVK 0 527 1 1 784 246 227 0 93 chr4 26154801 26154875 -129475245 - B1F SINE Alu -6 143 80 1 784 296 342 27 20 chr4 26154894 26155043 -129475077 + Lx9 LINE L1 7261 7410 -234 1 784 6688 119 129 4 chr4 26155282 26156593 -129473527 - L1_Mus2 LINE L1 0 6566 5003 1 784 917 131 7 7 chr4 26156593 26156739 -129473381 - B1_Mus1 SINE Alu -1 147 2 1 784 3909 176 427 9 chr4 26156739 26157560 -129472560 - L1_Mus2 LINE L1 -881 5002 3822 1 784 3494 176 70 10 chr4 26157560 26158273 -129471847 - RMER6A LTR ERVK 0 756 1 1 784 2255 196 142 21 chr4 26158274 26158351 -129471769 - L1_Mur2 LINE L1 -2059 3821 3752 1 784 219 36 0 0 chr4 26158351 26158379 -129471741 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 784 2255 196 142 21 chr4 26158379 26158631 -129471489 - L1_Mur2 LINE L1 -2129 3751 3485 1 784 207 0 0 0 chr4 26158631 26158654 -129471466 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 784 2255 196 142 21 chr4 26158654 26159022 -129471098 - L1_Mur2 LINE L1 -2396 3484 3041 1 784 476 313 61 66 chr4 26159309 26159521 -129470599 + RMER2 LTR ERV1 329 539 -28 1 784 488 194 0 0 chr4 26159571 26159664 -129470456 - L1_Mur2 LINE L1 -3265 2615 2523 1 784 28 29 0 0 chr4 26159975 26160010 -129470110 + AT_rich Low_complexity Low_complexity 1 35 0 1 784 273 29 0 0 chr4 26160388 26160422 -129469698 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 784 2444 203 22 51 chr4 26160968 26161613 -129468507 - L1_Mur2 LINE L1 -3359 2518 1893 1 784 1662 217 41 9 chr4 26161612 26162231 -129467889 - L1_Mur2 LINE L1 -4190 1687 1050 1 784 698 120 0 0 chr4 26162233 26162333 -129467787 - B1_Mus2 SINE Alu 0 147 48 2 784 636 274 32 12 chr4 26162334 26162585 -129467535 - L1_Mur2 LINE L1 -6585 1143 888 1 784 658 285 19 145 chr4 26163249 26163614 -129466506 + L1VL1 LINE L1 28 346 -6076 2 784 500 252 41 34 chr4 26163663 26163876 -129466244 + L1VL4 LINE L1 663 801 -5815 2 784 4081 130 10 56 chr4 26163844 26165041 -129465079 + L1VL4 LINE L1 725 1859 -2055 2 784 2256 120 24 32 chr4 26165041 26165420 -129464700 - RLTR9E LTR ERVK 0 409 34 2 784 6576 43 0 2 chr4 26165433 26166226 -129463894 - ETnERV2-int LTR ERVK -1404 6002 5212 2 784 7446 128 33 1 chr4 26166222 26167266 -129462854 - ETnERV2-int LTR ERVK -2413 4993 3932 2 784 378 0 0 0 chr4 26167266 26167308 -129462812 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 784 7446 128 33 1 chr4 26167308 26167364 -129462756 - ETnERV2-int LTR ERVK -3475 3931 3858 2 784 21359 112 23 15 chr4 26167364 26168352 -129461768 + L1VL4 LINE L1 1851 2889 -2994 2 784 6155 97 22 52 chr4 26168352 26169360 -129460760 - RLTR13A3 LTR ERVK 0 978 1 2 784 21359 112 23 15 chr4 26169360 26171792 -129458328 + L1VL4 LINE L1 2890 5298 -585 2 784 336 254 0 0 chr4 26171797 26171868 -129458252 + PB1D10 SINE Alu 1 71 -46 2 784 8227 47 1 0 chr4 26171985 26173350 -129456770 - L1Md_F2 LINE L1 0 6582 5216 2 784 315 98 0 38 chr4 26173357 26173410 -129456710 + B1_Mus2 SINE Alu 97 147 0 2 784 4040 224 43 53 chr4 26173448 26174396 -129455724 + Lx5 LINE L1 4665 5603 -277 2 784 2061 99 29 3 chr4 26174396 26174711 -129455409 - Lx LINE L1 0 6654 6332 2 784 4040 248 47 52 chr4 26174711 26175141 -129454979 + Lx5 LINE L1 5604 6046 -1004 2 784 297 0 0 0 chr4 26175141 26175174 -129454946 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 784 3012 291 55 50 chr4 26175174 26175657 -129454463 + Lx5 LINE L1 6047 6528 -522 2 784 447 68 0 0 chr4 26175657 26175716 -129454404 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 784 3012 291 55 50 chr4 26175716 26176235 -129453885 + Lx5 LINE L1 6529 7050 0 2 784 1058 69 0 0 chr4 26176348 26176479 -129453641 + B1_Mus1 SINE Alu 3 133 -15 2 784 397 32 32 16 chr4 26176481 26176544 -129453576 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2 784 21 0 0 0 chr4 26176551 26176572 -129453548 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 201 268 14 0 chr4 26176629 26176700 -129453420 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 2 784 1014 92 0 0 chr4 26177556 26177697 -129452423 + B1_Mus1 SINE Alu 1 141 -7 2 784 211 354 26 53 chr4 26177729 26177881 -129452239 + MIRb SINE MIR 104 251 -17 2 784 210 333 0 55 chr4 26178071 26178144 -129451976 + B1F SINE Alu 81 149 0 2 784 24 32 0 0 chr4 26179094 26179125 -129450995 + AT_rich Low_complexity Low_complexity 1 31 0 2 784 299 259 0 0 chr4 26180414 26180472 -129449648 + B4 SINE B4 215 272 -20 2 784 201 303 0 29 chr4 26180648 26180716 -129449404 + (CATA)n Simple_repeat Simple_repeat 2 67 0 2 784 23 33 0 0 chr4 26180738 26180768 -129449352 + AT_rich Low_complexity Low_complexity 1 30 0 2 784 258 32 0 0 chr4 26181066 26181097 -129449023 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 784 220 231 0 19 chr4 26181749 26181802 -129448318 + A-rich Low_complexity Low_complexity 2 53 0 2 784 2835 152 2 0 chr4 26181882 26182316 -129447804 + RLTR21 LTR ERVK 2 436 -1136 2 784 269 82 0 20 chr4 26182316 26182366 -129447754 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 2 784 3902 139 25 9 chr4 26182368 26183012 -129447108 + RLTR21 LTR ERVK 440 1093 -479 2 784 206 81 27 0 chr4 26183013 26183050 -129447070 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 784 1419 179 23 8 chr4 26183050 26183304 -129446816 + RLTR21 LTR ERVK 1288 1545 -27 2 784 7095 92 15 4 chr4 26183461 26184460 -129445660 + L1_Mus3 LINE L1 5627 6636 -2 2 784 656 310 42 92 chr4 26184604 26184683 -129445437 - MTD LTR MaLR -14 405 327 2 784 1448 138 145 69 chr4 26184683 26184986 -129445134 + ORR1A3 LTR MaLR 1 326 0 2 784 656 310 42 92 chr4 26184986 26185332 -129444788 - MTD LTR MaLR -93 326 3 2 784 827 235 113 53 chr4 26185378 26185430 -129444690 + MTC LTR MaLR 160 207 -214 2 784 1052 88 0 0 chr4 26185430 26185567 -129444553 + B1_Mm SINE Alu 2 138 -9 2 784 221 0 35 0 chr4 26185567 26185596 -129444524 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 784 827 235 113 53 chr4 26185596 26185789 -129444331 + MTC LTR MaLR 208 420 -1 2 784 802 286 6 0 chr4 26186091 26186269 -129443851 + B3 SINE B2 1 179 -37 2 784 1830 210 183 31 chr4 26186379 26187113 -129443007 + RMER6C LTR ERVK 1 692 -28 2 784 324 0 0 0 chr4 26187156 26187192 -129442928 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 784 522 0 0 0 chr4 26187192 26187249 -129442871 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 784 315 0 0 0 chr4 26188446 26188481 -129441639 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 784 645 144 0 0 chr4 26188481 26188627 -129441493 + (GA)n Simple_repeat Simple_repeat 1 146 0 2 784 213 65 0 0 chr4 26189023 26189054 -129441066 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 784 480 308 20 40 chr4 26189063 26189215 -129440905 + B1F SINE Alu 1 149 0 2 784 2893 46 0 0 chr4 26189653 26189999 -129440121 - ORR1A0 LTR MaLR 0 346 1 2 784 12777 53 6 1 chr4 26189999 26191699 -129438421 - ORR1A0-int LTR MaLR 0 1792 1 2 784 462 357 105 52 chr4 26191699 26191943 -129438177 - MLT1F1 LTR MaLR -81 488 232 2 784 498 299 40 0 chr4 26192557 26192731 -129437389 + B3A SINE B2 1 181 -17 2 784 1040 168 32 0 chr4 26192821 26193006 -129437114 - B2_Mm2 SINE B2 -4 191 1 2 784 303 333 63 5 chr4 26193034 26193257 -129436863 - L1MC LINE L1 -904 5242 5007 2 784 425 90 15 0 chr4 26195179 26195246 -129434874 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 2 784 1676 24 5 0 chr4 26195246 26195551 -129434569 + L1Md_F2 LINE L1 6367 6582 0 2 784 382 72 0 102 chr4 26195555 26195765 -129434355 + L1Md_F2 LINE L1 6512 6582 0 2 784 1691 209 78 47 chr4 26195846 26196292 -129433828 + Lx9 LINE L1 6528 6987 -657 2 784 1694 134 33 0 chr4 26196288 26196563 -129433557 + Lx4B LINE L1 4957 5240 -637 2 784 4248 207 113 100 chr4 26196563 26197869 -129432251 - RMER12 LTR ERVK 0 1322 1 2 784 7731 172 25 20 chr4 26197869 26199666 -129430454 + Lx4B LINE L1 5235 7044 -14 2 784 312 27 0 0 chr4 26199666 26199703 -129430417 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 2 784 7731 174 29 28 chr4 26199703 26199715 -129430405 + Lx4B LINE L1 7045 7054 -4 2 784 1640 237 59 9 chr4 26199804 26200106 -129430014 + Lx9 LINE L1 6989 7307 -337 2 784 570 15 0 0 chr4 26200106 26200173 -129429947 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 784 1640 237 59 9 chr4 26200173 26200292 -129429828 + Lx9 LINE L1 7308 7431 -213 2 784 303 143 79 0 chr4 26200858 26200921 -129429199 - RMER12 LTR ERVK -106 1216 1149 2 784 388 292 13 102 chr4 26201039 26201275 -129428845 - RLTR22_Mur LTR ERVK -1263 585 371 2 784 914 277 89 34 chr4 26201284 26201789 -129428331 + L1MA5 LINE L1 5392 5924 -376 2 784 255 333 22 7 chr4 26202049 26202185 -129427935 + GA-rich Low_complexity Low_complexity 1 138 0 2 784 504 289 121 0 chr4 26202568 26202758 -129427362 - B3 SINE B2 -3 213 1 2 784 219 152 0 0 chr4 26204414 26204460 -129425660 + GA-rich Low_complexity Low_complexity 1 46 0 2 784 590 223 81 19 chr4 26204802 26204962 -129425158 - RMER20B LTR ERVK -215 412 243 2 784 4029 179 39 26 chr4 26204950 26205718 -129424402 + RMER19B LTR ERVK 125 902 0 2 784 2673 163 6 0 chr4 26205722 26206200 -129423920 - L1_Mur2 LINE L1 -421 5456 4976 2 784 301 154 0 0 chr4 26206202 26206254 -129423866 - L1_Mur2 LINE L1 -1247 4630 4579 2 784 2602 183 68 19 chr4 26206254 26206889 -129423231 - L1_Mur2 LINE L1 -1589 4288 3623 2 784 33036 97 11 1 chr4 26206874 26213189 -129416931 - L1_Mus2 LINE L1 0 6566 183 2 784 1262 200 104 28 chr4 26213192 26213683 -129416437 - L1_Mur2 LINE L1 -4451 1426 890 2 784 246 359 0 88 chr4 26213952 26214065 -129416055 - ID_B1 SINE B4 -38 186 84 2 785 690 75 0 0 chr4 26214408 26214501 -129415619 + (GGA)n Simple_repeat Simple_repeat 3 95 0 2 785 1204 221 135 7 chr4 26215013 26215309 -129414811 - ORR1B2 LTR MaLR -24 343 10 2 785 2426 227 63 48 chr4 26215336 26216266 -129413854 - ORR1B2-int LTR MaLR 0 1509 455 2 785 576 62 0 0 chr4 26216284 26216365 -129413755 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 785 1926 304 83 27 chr4 26216461 26216978 -129413142 + Lx8 LINE L1 6388 6949 -524 2 785 225 0 0 0 chr4 26216978 26217003 -129413117 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 785 1926 304 83 27 chr4 26217003 26217325 -129412795 + Lx8 LINE L1 6950 7274 -199 2 785 483 18 0 0 chr4 26217460 26217516 -129412604 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 785 5038 66 9 1 chr4 26217602 26218258 -129411862 + L1_Mus1 LINE L1 5907 6567 0 2 785 24 0 0 0 chr4 26218261 26218285 -129411835 + AT_rich Low_complexity Low_complexity 1 24 0 2 785 283 312 164 9 chr4 26218637 26218827 -129411293 - MLT1E1A LTR MaLR 0 680 416 2 785 1174 255 11 0 chr4 26218875 26219142 -129410978 + Lx6 LINE L1 7187 7456 -4 2 785 23 0 0 0 chr4 26219278 26219301 -129410819 + AT_rich Low_complexity Low_complexity 1 23 0 2 785 817 198 35 0 chr4 26219392 26219564 -129410556 - RLTR28 LTR ERVL -1 523 346 2 785 2682 126 26 47 chr4 26219565 26220031 -129410089 + Lx3C LINE L1 6521 6976 0 2 785 207 0 0 0 chr4 26220033 26220056 -129410064 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 785 1248 171 20 20 chr4 26220056 26220307 -129409813 - RLTR28 LTR ERVL -240 284 34 2 785 8434 11 0 0 chr4 26221371 26222328 -129407792 - L1_Mm LINE L1 -7 5876 4920 2 785 548 40 0 0 chr4 26222328 26222402 -129407718 + L1Md_T LINE L1 6508 6581 -1 2 785 282 29 0 0 chr4 26222408 26222443 -129407677 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 785 434 208 30 74 chr4 26222565 26222700 -129407420 + MTD-int LTR MaLR 44 172 -1086 2 785 2804 39 0 3 chr4 26222878 26223216 -129406904 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 785 20994 14 2 2 chr4 26223216 26225582 -129404538 - IAPEz-int LTR ERVK 0 6481 4117 2 785 467 66 0 0 chr4 26225574 26225635 -129404485 - IAPEz-int LTR ERVK -2896 3585 3525 2 785 917 81 24 0 chr4 26225635 26225758 -129404362 - IAPEz-int LTR ERVK -2770 4910 4785 2 785 1846 111 4 4 chr4 26225755 26226017 -129404103 - IAPEz-int LTR ERVK -5183 2497 2236 2 785 442 66 0 32 chr4 26226006 26226069 -129404051 - IAPEz-int LTR ERVK -5062 1419 1359 2 785 4395 55 65 44 chr4 26226069 26226710 -129403410 - IAPEz-int LTR ERVK -5819 662 8 2 785 2804 39 0 3 chr4 26226710 26227048 -129403072 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 785 2131 255 54 60 chr4 26227866 26228709 -129401411 + MTD-int LTR MaLR 493 1258 0 2 785 1206 260 123 0 chr4 26228709 26229082 -129401038 + MTD LTR MaLR 1 419 0 2 785 407 304 84 88 chr4 26229139 26229435 -129400685 - L1MD3 LINE L1 -129 7866 7572 2 785 657 199 0 0 chr4 26229487 26229623 -129400497 + GA-rich Low_complexity Low_complexity 2 137 0 2 785 263 305 122 41 chr4 26229644 26229914 -129400206 - L2 LINE L2 -1550 1869 1578 2 785 315 357 0 15 chr4 26229958 26230089 -129400031 - MLT1E1A LTR MaLR -9 671 543 2 785 237 338 0 14 chr4 26230157 26230226 -129399894 + MLT1A LTR MaLR 25 92 -282 2 785 2526 4 0 0 chr4 26230445 26230726 -129399394 + L1Md_A LINE L1 6302 6582 0 2 785 234 244 0 0 chr4 26230901 26230942 -129399178 - MLT1E1 LTR MaLR -305 349 309 2 785 1553 207 12 18 chr4 26230932 26231262 -129398858 - ORR1B1 LTR MaLR -27 367 40 2 785 677 301 46 0 chr4 26231403 26231599 -129398521 + B3 SINE B2 11 215 -1 2 785 3841 95 22 19 chr4 26231965 26232545 -129397575 + L1_Mus3 LINE L1 6055 6636 -2 2 785 14745 106 7 1 chr4 26232794 26235689 -129394431 + L1_Mus2 LINE L1 3653 6565 -1 2 785 538 357 7 7 chr4 26235737 26235881 -129394239 + RSINE1 SINE B4 1 144 -21 2 785 213 39 0 0 chr4 26235891 26235917 -129394203 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 785 254 270 58 29 chr4 26236484 26236587 -129393533 - L2 LINE L2 -501 2918 2813 3 785 594 229 68 5 chr4 26237263 26237469 -129392651 + L1_Mur3 LINE L1 3147 3365 -2515 3 785 1442 289 38 38 chr4 26237486 26237958 -129392162 - RMER19C LTR ERVK 0 611 140 3 785 31980 75 15 15 chr4 26238099 26243096 -129387024 + L1Md_A LINE L1 590 5586 -297 3 785 8748 16 0 0 chr4 26243096 26244092 -129386028 + L1Md_A LINE L1 5587 6582 0 3 785 8252 84 1 4 chr4 26244092 26245224 -129384896 + L1Md_F2 LINE L1 4458 5585 -298 3 785 7202 79 11 4 chr4 26245225 26246201 -129383919 + L1Md_F2 LINE L1 5587 6569 -13 3 785 263 265 118 57 chr4 26246206 26246430 -129383690 + L1_Mur3 LINE L1 3472 3737 -2406 3 785 3989 173 12 13 chr4 26246430 26247186 -129382934 - L1_Mur2 LINE L1 -1733 4144 3390 3 785 7323 106 12 2 chr4 26247178 26248389 -129381731 + L1_Mus4 LINE L1 5403 6626 -10 3 785 2903 275 67 82 chr4 26248449 26248822 -129381298 + Lx6 LINE L1 6417 6737 -723 3 785 636 74 0 0 chr4 26248822 26248917 -129381203 + (CAAAC)n Simple_repeat Simple_repeat 5 99 0 3 785 2903 275 67 82 chr4 26248917 26249588 -129380532 + Lx6 LINE L1 6738 7445 -15 3 785 640 258 6 6 chr4 26249617 26249777 -129380343 + L1_Mur3 LINE L1 3747 3906 -1974 3 785 269 151 37 19 chr4 26249779 26249833 -129380287 - MurSatRep1 Unknown Unknown -1857 280 226 3 785 27 29 0 0 chr4 26249976 26250010 -129380110 + AT_rich Low_complexity Low_complexity 1 34 0 3 785 474 255 141 0 chr4 26250149 26250298 -129379822 + Lx9 LINE L1 6715 6884 -760 3 785 24 0 0 0 chr4 26250534 26250558 -129379562 + AT_rich Low_complexity Low_complexity 1 24 0 3 785 351 333 43 47 chr4 26251146 26251357 -129378763 + L1M2 LINE L1 4185 4394 -1749 3 785 652 310 115 17 chr4 26252061 26252356 -129377764 - MER2 DNA MER2_type -1 344 21 3 785 187 324 95 0 chr4 26252706 26252780 -129377340 - L4 LINE RTE -201 1828 1748 3 785 354 303 85 63 chr4 26253036 26253307 -129376813 - B4 SINE B4 -14 278 2 3 785 465 19 0 0 chr4 26253854 26253908 -129376212 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 785 973 104 0 0 chr4 26253910 26254045 -129376075 - B1_Mm SINE Alu 0 147 13 3 785 2057 105 40 0 chr4 26256586 26256910 -129373210 - Lx2 LINE L1 -2 6995 6659 3 785 252 0 0 0 chr4 26257043 26257071 -129373049 + (CTATA)n Simple_repeat Simple_repeat 5 32 0 3 785 230 106 21 0 chr4 26257072 26257119 -129373001 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 785 306 213 0 0 chr4 26257122 26257197 -129372923 - Lx3A LINE L1 -5 6976 6902 3 785 1944 63 0 0 chr4 26257545 26257784 -129372336 - L1Md_F2 LINE L1 -387 6195 5957 3 785 3000 56 0 0 chr4 26257784 26258161 -129371959 + L1Md_F2 LINE L1 6194 6570 -12 3 785 399 68 0 0 chr4 26259193 26259252 -129370868 + (A)n Simple_repeat Simple_repeat 1 59 0 3 785 186 71 0 0 chr4 26260028 26260056 -129370064 + (T)n Simple_repeat Simple_repeat 1 28 0 3 785 24 32 0 0 chr4 26260178 26260209 -129369911 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 23 0 0 0 chr4 26260399 26260422 -129369698 + AT_rich Low_complexity Low_complexity 1 23 0 3 785 26 0 0 0 chr4 26261682 26261708 -129368412 + AT_rich Low_complexity Low_complexity 1 26 0 3 785 245 273 82 48 chr4 26262308 26262454 -129367666 + L1M2 LINE L1 1636 1786 -5063 3 785 189 0 0 0 chr4 26262456 26262477 -129367643 + (A)n Simple_repeat Simple_repeat 1 21 0 3 785 1147 350 87 6 chr4 26262480 26263101 -129367019 + Lx8 LINE L1 6622 7292 -181 3 785 345 296 63 49 chr4 26263393 26263535 -129366585 + ID_B1 SINE B4 73 216 -8 3 785 482 163 110 31 chr4 26263418 26263545 -129366575 + B1F2 SINE Alu 13 149 0 3 785 1111 66 0 0 chr4 26264278 26264415 -129365705 + B1_Mm SINE Alu 2 138 -9 3 785 459 0 0 0 chr4 26264415 26264466 -129365654 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 785 888 282 88 10 chr4 26264478 26264875 -129365245 - L1MC2 LINE L1 -252 6092 5665 3 785 580 307 79 19 chr4 26265197 26265463 -129364657 + Lx8 LINE L1 7176 7457 -16 3 785 27 49 0 0 chr4 26267517 26267558 -129362562 + AT_rich Low_complexity Low_complexity 1 41 0 3 785 24 53 0 0 chr4 26268232 26268270 -129361850 + AT_rich Low_complexity Low_complexity 1 38 0 3 785 224 241 0 12 chr4 26268285 26268365 -129361755 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 785 180 0 0 0 chr4 26269038 26269058 -129361062 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 785 468 306 147 15 chr4 26269093 26269358 -129360762 + MER2 DNA MER2_type 22 321 -24 3 785 348 43 0 0 chr4 26270445 26270491 -129359629 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 785 1283 278 135 23 chr4 26270494 26271109 -129359011 + Lx8 LINE L1 6790 7473 0 3 785 346 212 194 19 chr4 26271342 26271470 -129358650 + B1_Mur1 SINE Alu 1 136 -13 3 785 253 298 0 116 chr4 26271515 26271610 -129358510 + ID SINE ID 1 84 -140 3 785 390 193 0 40 chr4 26271810 26271934 -129358186 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 785 231 267 228 11 chr4 26272840 26272960 -129357160 - MIR SINE MIR -65 203 64 3 785 198 0 0 0 chr4 26274529 26274551 -129355569 + (A)n Simple_repeat Simple_repeat 1 22 0 3 785 301 303 114 25 chr4 26275669 26275984 -129354136 - L1M5 LINE L1 -1446 4700 4358 3 785 6482 97 80 15 chr4 26276687 26277647 -129352473 - RLTR13D5 LTR ERVK 0 1023 1 3 785 195 42 0 0 chr4 26279079 26279103 -129351017 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 3 785 318 261 0 0 chr4 26280604 26280669 -129349451 - B3 SINE B2 -67 149 85 3 785 2128 138 127 8 chr4 26280818 26281212 -129348908 - BGLII_B LTR ERVK 0 441 1 3 785 208 240 53 13 chr4 26281501 26281577 -129348543 + GA-rich Low_complexity Low_complexity 3 81 0 3 785 1880 323 56 75 chr4 26282238 26284261 -129345859 + Lx8 LINE L1 5463 7439 -34 3 785 263 328 69 55 chr4 26284448 26284593 -129345527 + MLT1D LTR MaLR 304 450 -55 3 785 21 57 0 0 chr4 26284628 26284663 -129345457 + AT_rich Low_complexity Low_complexity 1 35 0 3 785 656 341 38 14 chr4 26284782 26284993 -129345127 - B3 SINE B2 0 216 1 3 785 3095 118 17 33 chr4 26285347 26285830 -129344290 - MT2C_Mm LTR ERVL 0 475 1 3 785 1528 152 38 0 chr4 26285855 26286119 -129344001 - Lx2 LINE L1 -2 6995 6722 3 785 7046 93 4 7 chr4 26286130 26286275 -129343845 - L1_Mus1 LINE L1 -2 6565 6426 3 785 2874 81 8 5 chr4 26286275 26286670 -129343450 + MTA_Mm LTR MaLR 1 396 0 3 785 29672 123 11 15 chr4 26286670 26292731 -129337389 - L1_Mus1 LINE L1 -142 6425 380 3 785 318 141 13 57 chr4 26292732 26292806 -129337314 - Lx2B LINE L1 -260 6740 6689 3 785 403 282 108 60 chr4 26293601 26293786 -129336334 + MTD LTR MaLR 5 198 -221 3 785 2210 112 3 9 chr4 26293786 26294111 -129336009 + Lx3B LINE L1 5598 5920 -1089 3 785 313 122 12 24 chr4 26294135 26294219 -129335901 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 3 785 5557 135 46 44 chr4 26294229 26295279 -129334841 + Lx3B LINE L1 5917 6968 -5 3 785 21 0 0 0 chr4 26295282 26295303 -129334817 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 348 318 30 37 chr4 26295349 26295483 -129334637 + MTD LTR MaLR 273 405 -14 3 785 475 276 9 0 chr4 26297469 26297585 -129332535 + MTC-int LTR MaLR 57 173 -1085 3 785 251 309 88 26 chr4 26297777 26297890 -129332230 - MER103 DNA DNA -34 132 13 3 785 290 308 22 126 chr4 26298188 26298370 -129331750 + MTC-int LTR MaLR 143 305 -953 3 785 1271 288 6 0 chr4 26298370 26298697 -129331423 + MERVL_2A-int LTR ERVL 2055 2383 -3378 3 785 316 267 76 118 chr4 26298701 26298820 -129331300 + MERVL_2A-int LTR ERVL 2777 2890 -2871 3 785 297 337 23 148 chr4 26298857 26299141 -129330979 + MTC-int LTR MaLR 412 657 -441 3 785 593 372 60 0 chr4 26299376 26299642 -129330478 - B4 SINE B4 -10 282 1 3 785 562 188 0 0 chr4 26299786 26299882 -129330238 + PB1D10 SINE Alu 1 96 -21 3 785 287 325 41 33 chr4 26300469 26300590 -129329530 - 7SK RNA RNA -69 262 141 3 785 2746 103 32 34 chr4 26300786 26301227 -129328893 + Lx2 LINE L1 6551 6990 -7 3 785 438 300 16 40 chr4 26301277 26301402 -129328718 + RSINE1 SINE B4 8 129 -36 3 785 441 54 0 0 chr4 26301408 26301464 -129328656 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 785 458 224 0 114 chr4 26301523 26301654 -129328466 + PB1D9 SINE Alu 4 119 -1 3 785 304 358 31 36 chr4 26301655 26301849 -129328271 + L1M5 LINE L1 4763 4955 -1191 3 785 1605 121 12 0 chr4 26302536 26302776 -129327344 - RLTR33 LTR ERVK -81 597 355 3 785 703 167 139 0 chr4 26302758 26302902 -129327218 - RLTR33 LTR ERVK -501 177 14 3 785 699 12 0 0 chr4 26303500 26303580 -129326540 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 3 785 270 0 0 0 chr4 26303585 26303615 -129326505 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 785 5952 37 0 10 chr4 26303660 26304390 -129325730 + L1Md_F2 LINE L1 5860 6582 0 3 785 400 299 21 0 chr4 26304427 26304524 -129325596 - B3A SINE B2 -98 100 2 3 785 445 321 44 0 chr4 26304600 26304737 -129325383 + B3 SINE B2 68 210 -6 3 785 258 242 48 16 chr4 26305466 26305529 -129324591 + B3 SINE B2 27 91 -125 3 785 653 317 75 60 chr4 26305543 26305942 -129324178 + Lx7 LINE L1 6830 7234 -462 3 785 456 19 0 0 chr4 26306034 26306087 -129324033 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 785 878 269 0 18 chr4 26306282 26306502 -129323618 - B3 SINE B2 0 216 1 3 785 213 356 0 0 chr4 26306929 26306988 -129323132 + ID4_ SINE ID 21 79 -4 3 785 288 137 0 0 chr4 26306990 26307041 -129323079 + (GGGAA)n Simple_repeat Simple_repeat 1 51 0 3 785 191 400 30 15 chr4 26307189 26307321 -129322799 - L2 LINE L2 -717 2702 2569 3 785 3847 138 40 9 chr4 26307339 26307991 -129322129 - RLTR33 LTR ERVK -6 672 1 3 785 2101 217 17 12 chr4 26308196 26308615 -129321505 + MTC LTR MaLR 1 421 0 3 785 783 0 0 0 chr4 26308812 26308899 -129321221 + (TTCTC)n Simple_repeat Simple_repeat 4 90 0 3 785 405 0 0 0 chr4 26308910 26308955 -129321165 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 785 549 0 0 0 chr4 26308955 26309015 -129321105 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 785 409 291 42 8 chr4 26310684 26310802 -129319318 + RSINE1 SINE B4 44 165 0 3 785 843 281 5 0 chr4 26311026 26311236 -129318884 - B3 SINE B2 0 216 6 4 785 1850 134 65 52 chr4 26311617 26312002 -129318118 + RLTR9E LTR ERVK 20 409 0 4 785 21 0 0 0 chr4 26312097 26312118 -129318002 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 591 278 39 19 chr4 26312186 26312340 -129317780 + B3 SINE B2 16 172 -44 4 785 378 74 0 0 chr4 26312344 26312398 -129317722 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 785 927 317 147 37 chr4 26313046 26313502 -129316618 - MER74A LTR ERVL -52 506 1 4 785 409 293 71 53 chr4 26314213 26314399 -129315721 + MTD LTR MaLR 1 188 -233 4 785 285 290 106 11 chr4 26314388 26314482 -129315638 - MTE-int LTR MaLR -517 1063 961 4 785 555 313 88 5 chr4 26314479 26314694 -129315426 + MTD LTR MaLR 183 415 -4 4 785 1105 284 152 96 chr4 26314712 26315768 -129314352 + MTD-int LTR MaLR 20 1224 -34 4 785 333 0 0 0 chr4 26315768 26315805 -129314315 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 785 623 260 83 17 chr4 26315830 26316010 -129314110 + MTD LTR MaLR 1 192 -227 4 785 396 125 0 0 chr4 26316119 26316183 -129313937 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 785 6801 61 3 1 chr4 26316263 26317114 -129313006 - L1_Mus1 LINE L1 0 6567 5715 4 785 291 104 0 0 chr4 26317423 26317471 -129312649 + (CTG)n Simple_repeat Simple_repeat 2 49 0 4 785 21 0 0 0 chr4 26317698 26317719 -129312401 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 575 284 116 0 chr4 26319374 26319564 -129310556 - B3 SINE B2 -4 212 1 4 785 293 263 99 28 chr4 26320831 26320972 -129309148 - MLT1H LTR MaLR -335 214 64 4 785 5894 135 2 13 chr4 26321026 26321955 -129308165 - Lx2A1 LINE L1 -1 7007 6089 4 785 2374 123 3 8 chr4 26321955 26322316 -129307804 + Lx2A1 LINE L1 5706 6064 -944 4 785 27870 126 23 10 chr4 26322560 26328465 -129301655 + L1_Mus2 LINE L1 567 6569 0 4 785 189 0 0 0 chr4 26328810 26328831 -129301289 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 785 404 318 38 54 chr4 26328883 26329069 -129301051 - B3A SINE B2 -12 183 1 4 785 357 296 37 74 chr4 26331314 26331449 -129298671 - RMER10B LTR ERVL 0 398 269 4 785 183 114 0 0 chr4 26331543 26331578 -129298542 + (A)n Simple_repeat Simple_repeat 1 35 0 4 785 3377 147 8 6 chr4 26331779 26332423 -129297697 - Lx2A LINE L1 -1096 5912 5268 4 785 216 236 27 27 chr4 26332470 26332544 -129297576 + PB1D7 SINE Alu 32 105 -15 4 785 601 232 0 48 chr4 26333044 26333189 -129296931 + RMER15 LTR ERVL 84 221 -354 4 785 210 71 0 0 chr4 26333407 26333435 -129296685 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 785 706 333 0 30 chr4 26334284 26334485 -129295635 - B3A SINE B2 -2 196 2 4 785 213 355 0 31 chr4 26334647 26334711 -129295409 + ID4 SINE ID 12 73 -10 4 785 522 0 0 0 chr4 26334819 26334877 -129295243 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 785 299 219 0 27 chr4 26334894 26334969 -129295151 + RMER15 LTR ERVL 38 110 -465 4 785 3547 84 8 0 chr4 26334975 26335461 -129294659 + L1Md_T LINE L1 6093 6582 0 4 785 2680 130 12 28 chr4 26335461 26335909 -129294211 + Lx LINE L1 6137 6566 0 4 785 229 325 11 88 chr4 26335919 26336010 -129294110 + RMER15 LTR ERVL 138 221 -354 4 785 1744 206 23 3 chr4 26336032 26336378 -129293742 + RMER15 LTR ERVL 198 550 -25 4 785 1144 54 0 33 chr4 26338268 26338412 -129291708 + B1_Mm SINE Alu 1 141 -6 4 785 396 0 0 0 chr4 26338412 26338456 -129291664 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 785 297 288 104 75 chr4 26338817 26338990 -129291130 - MT2A LTR ERVL -355 178 1 4 785 180 0 0 0 chr4 26339424 26339444 -129290676 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 785 6652 296 69 20 chr4 26339555 26342151 -129287969 - MERVL-int LTR ERVL -494 4991 2269 4 785 401 288 76 70 chr4 26342145 26342459 -129287661 - MERVL_2A-int LTR ERVL -5433 328 13 4 785 440 312 23 51 chr4 26343242 26343458 -129286662 - RMER4A LTR ERVK -251 215 6 4 785 285 24 0 0 chr4 26343655 26343697 -129286423 - L1Md_T LINE L1 -1 6581 6540 4 785 2424 138 10 22 chr4 26343878 26344294 -129285826 - Lx LINE L1 -2 6652 6242 4 785 578 249 52 17 chr4 26344613 26344777 -129285343 + Lx5 LINE L1 6881 7041 -17 4 98 4814 166 50 16 chr4 26345230 26346248 -129283872 - L1_Mur1 LINE L1 -1591 4295 3243 4 786 2131 138 3 0 chr4 26346248 26346574 -129283546 - ORR1A2 LTR MaLR 0 327 1 4 786 3268 158 19 13 chr4 26346574 26347195 -129282925 - MusHAL1 LINE L1 -676 2036 1412 4 786 7970 166 62 7 chr4 26347194 26348923 -129281197 + Lx2B LINE L1 4277 6122 -878 4 786 3131 206 16 12 chr4 26348945 26349622 -129280498 + Lx2B LINE L1 6321 7000 0 4 786 401 0 0 20 chr4 26349682 26349732 -129280388 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 786 234 0 0 0 chr4 26349732 26349757 -129280363 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 786 713 281 61 43 chr4 26349822 26350101 -129280019 - MER67D LTR ERV1 -217 297 14 4 786 441 232 72 68 chr4 26350297 26350547 -129279573 + Lx9 LINE L1 7390 7640 -4 4 786 25806 129 59 17 chr4 26350802 26356757 -129273363 + L1_Mus1 LINE L1 325 6566 -1 4 786 213 306 214 48 chr4 26356857 26357063 -129273057 + MIRb SINE MIR 22 261 -7 4 786 248 270 47 16 chr4 26357745 26357809 -129272311 + ID SINE ID 5 70 -154 4 786 312 83 0 0 chr4 26357827 26357875 -129272245 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 786 368 250 63 27 chr4 26358692 26358803 -129271317 - PB1D9 SINE Alu -1 119 5 4 786 324 304 184 18 chr4 26361602 26361820 -129268300 + MER2 DNA MER2_type 92 345 0 4 786 289 320 92 43 chr4 26362446 26362675 -129267445 + ORR1E LTR MaLR 77 342 -37 4 786 23 0 0 0 chr4 26362717 26362740 -129267380 + AT_rich Low_complexity Low_complexity 1 23 0 4 786 982 250 44 35 chr4 26362980 26363299 -129266821 + L1_Mur3 LINE L1 2404 2725 -3155 4 786 994 144 72 0 chr4 26363299 26363466 -129266654 + Lx3C LINE L1 6535 6713 -263 4 786 263 103 0 0 chr4 26363463 26363502 -129266618 - Lx3C LINE L1 -372 6604 6566 4 786 658 295 111 26 chr4 26363542 26364109 -129266011 + L1_Mur3 LINE L1 2739 3353 -2527 4 786 542 277 7 0 chr4 26364230 26364385 -129265735 + L1_Mur3 LINE L1 4713 4868 -1012 4 786 357 82 0 0 chr4 26364385 26364434 -129265686 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 786 2743 242 30 16 chr4 26364478 26365104 -129265016 - Lx5 LINE L1 0 7050 6416 4 786 414 214 172 16 chr4 26365120 26365248 -129264872 - MTE2a LTR MaLR -56 323 176 4 786 592 339 30 38 chr4 26365368 26365632 -129264488 + MTD LTR MaLR 1 262 -157 4 786 526 232 0 0 chr4 26365633 26365732 -129264388 - Lx5 LINE L1 -688 6362 6264 4 786 4504 169 5 18 chr4 26365733 26366248 -129263872 + Lx5 LINE L1 5046 5550 -327 4 786 3245 48 5 0 chr4 26366248 26366642 -129263478 + MTA_Mm LTR MaLR 1 396 0 4 786 4504 195 15 13 chr4 26366642 26367356 -129262764 + Lx5 LINE L1 5551 6278 -772 4 786 509 277 84 23 chr4 26367372 26367634 -129262486 + L1_Mur3 LINE L1 5115 5392 -488 4 786 437 223 64 11 chr4 26367636 26367757 -129262363 + B1_Mus2 SINE Alu 2 147 -2 4 786 499 337 113 23 chr4 26367790 26368042 -129262078 + L1_Mur3 LINE L1 5446 5729 -148 4 786 549 260 211 84 chr4 26368042 26368374 -129261746 + ORR1D1 LTR MaLR 1 374 0 4 786 481 337 114 24 chr4 26368374 26368422 -129261698 + L1_Mur3 LINE L1 5730 5772 -105 4 786 734 310 13 89 chr4 26368429 26368822 -129261298 + Lx8 LINE L1 6170 6532 -941 4 786 1591 218 57 12 chr4 26370898 26371182 -129258938 - RMER4B LTR ERVK 0 585 253 4 786 357 62 0 0 chr4 26371182 26371230 -129258890 + (CAG)n Simple_repeat Simple_repeat 1 48 0 4 786 1591 219 57 16 chr4 26371230 26371424 -129258696 - RMER4B LTR ERVK -333 252 54 4 786 8098 172 20 112 chr4 26371433 26374418 -129255702 - Lx2B LINE L1 -13 6987 4328 4 786 3982 187 8 20 chr4 26374421 26375339 -129254781 - MusHAL1 LINE L1 -1804 908 2 4 786 1228 198 32 0 chr4 26375341 26375588 -129254532 - L1VL4 LINE L1 -5522 780 526 4 786 446 82 0 0 chr4 26375790 26375851 -129254269 - L1Md_A LINE L1 -513 6069 6009 4 786 3490 75 2 4 chr4 26375851 26376318 -129253802 + L1Md_T LINE L1 6117 6582 0 4 786 497 330 97 56 chr4 26376322 26376695 -129253425 + Lx8 LINE L1 6853 7240 -233 4 786 449 68 27 0 chr4 26377246 26377319 -129252801 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 4 786 315 0 0 0 chr4 26377321 26377356 -129252764 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 786 457 268 124 21 chr4 26377869 26378063 -129252057 - Lx9 LINE L1 -354 7290 7077 4 786 233 200 0 22 chr4 26378872 26378918 -129251202 + CT-rich Low_complexity Low_complexity 3 47 0 4 786 543 279 102 23 chr4 26379661 26379837 -129250283 + MTEb LTR MaLR 9 198 -181 4 786 1786 275 7 12 chr4 26380410 26380822 -129249298 - MTD LTR MaLR 0 419 10 4 786 3071 137 30 21 chr4 26381419 26381950 -129248170 + Lx3B LINE L1 6434 6969 -4 4 786 216 0 0 0 chr4 26382197 26382221 -129247899 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 4 786 1678 127 0 11 chr4 26382221 26382484 -129247636 - Lx3A LINE L1 -15 6966 6707 4 786 4569 161 160 19 chr4 26382484 26383022 -129247098 - RLTR13D3 LTR ERVK -4 1110 466 4 786 3338 33 2 2 chr4 26383022 26383418 -129246702 + MTA_Mm LTR MaLR 1 396 0 4 786 4569 161 160 19 chr4 26383418 26383852 -129246268 - RLTR13D3 LTR ERVK -649 465 1 4 786 1101 104 67 5 chr4 26383863 26384057 -129246063 + L1_Mur1 LINE L1 1357 1562 -4324 4 786 278 269 26 0 chr4 26384320 26384398 -129245722 + Lx7 LINE L1 6882 6961 -735 4 786 295 301 158 12 chr4 26384390 26384555 -129245565 + Lx7 LINE L1 7095 7283 -413 4 786 483 82 0 0 chr4 26384578 26384651 -129245469 + (TTA)n Simple_repeat Simple_repeat 3 75 0 4 786 217 232 10 40 chr4 26384661 26384760 -129245360 + T-rich Low_complexity Low_complexity 5 100 0 4 786 6216 73 51 15 chr4 26384865 26385727 -129244393 + RLTR13B1 LTR ERVK 1 893 0 4 786 29 20 0 39 chr4 26385727 26385755 -129244365 + AT_rich Low_complexity Low_complexity 1 27 0 4 786 2001 97 3 28 chr4 26385755 26386074 -129244046 - L1Md_F2 LINE L1 -1 6581 6271 4 786 29 20 0 39 chr4 26386074 26386096 -129244024 + AT_rich Low_complexity Low_complexity 1 22 0 4 786 404 172 58 17 chr4 26386359 26386531 -129243589 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 786 261 378 0 112 chr4 26387485 26387610 -129242510 - PB1D7 SINE Alu -9 111 1 4 786 811 230 127 24 chr4 26387699 26387904 -129242216 - MTC LTR MaLR 0 421 196 4 786 6913 88 24 1 chr4 26387912 26389213 -129240907 - L1_Mus1 LINE L1 0 6567 5235 4 786 6492 118 14 1 chr4 26389211 26390193 -129239927 + L1_Mus1 LINE L1 4270 5264 -619 4 786 1112 192 5 19 chr4 26390193 26390405 -129239715 - MTC LTR MaLR -211 210 2 4 786 734 223 0 20 chr4 26390405 26390556 -129239564 + B1_Mur3 SINE Alu 1 148 -1 5 786 231 194 0 0 chr4 26390883 26390919 -129239201 - URR1B DNA MER1_type -189 36 1 5 786 22 35 0 0 chr4 26394005 26394034 -129236086 + AT_rich Low_complexity Low_complexity 1 29 0 5 786 387 0 0 0 chr4 26394101 26394144 -129235976 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 786 236 102 20 0 chr4 26394144 26394192 -129235928 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 786 333 218 0 0 chr4 26394471 26394549 -129235571 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 5 786 5916 146 72 4 chr4 26394549 26395559 -129234561 + Lx3C LINE L1 5891 6969 -7 5 786 294 383 0 0 chr4 26396434 26396515 -129233605 - PB1D10 SINE Alu -27 90 10 5 786 2989 68 5 10 chr4 26396799 26397197 -129232923 - MTA_Mm LTR MaLR 0 396 1 5 786 7758 182 77 9 chr4 26397482 26400223 -129229897 - Lx4A LINE L1 0 7058 4136 5 786 970 261 36 9 chr4 26400304 26400528 -129229592 + MYSERV-int LTR ERVK 4897 5126 -1424 5 786 426 330 66 28 chr4 26400528 26400709 -129229411 + RMER4A LTR ERVK 251 438 -28 5 786 4592 211 39 32 chr4 26400709 26401890 -129228230 + MYSERV6-int LTR ERVK 7769 8957 -2 5 786 263 200 135 62 chr4 26401894 26401976 -129228144 + RLTR15 LTR ERVK 1 127 -232 5 786 567 0 0 0 chr4 26401976 26402039 -129228081 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 786 263 336 77 73 chr4 26402039 26402235 -129227885 + RLTR15 LTR ERVK 128 327 -32 5 786 1022 323 23 23 chr4 26402252 26402686 -129227434 - L1_Rod LINE L1 -6710 462 29 5 786 180 0 0 0 chr4 26402748 26402768 -129227352 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 5 786 607 119 62 0 chr4 26402798 26402958 -129227162 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 5 786 1377 326 62 55 chr4 26402958 26403817 -129226303 - Lx9 LINE L1 -188 7456 6592 5 786 203 281 0 0 chr4 26405273 26405330 -129224790 + T-rich Low_complexity Low_complexity 1 57 0 5 786 5555 148 46 4 chr4 26405342 26406336 -129223784 - Lx3C LINE L1 0 6976 5941 5 786 442 355 60 65 chr4 26406400 26406617 -129223503 + B3A SINE B2 1 216 0 5 786 1875 256 49 21 chr4 26406964 26407160 -129222960 + Lx7 LINE L1 6794 7004 -692 5 786 2422 122 24 22 chr4 26407160 26407572 -129222548 + Lx LINE L1 6242 6654 0 5 786 1875 256 49 21 chr4 26407572 26407901 -129222219 + Lx7 LINE L1 7005 7334 -362 5 786 445 306 43 67 chr4 26407948 26408206 -129221914 - Lx6 LINE L1 -73 7387 7173 5 786 552 242 111 0 chr4 26408230 26408385 -129221735 + Lx7 LINE L1 7356 7529 -167 5 786 281 26 0 26 chr4 26408385 26408424 -129221696 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 5 786 552 242 111 0 chr4 26408424 26408466 -129221654 + Lx7 LINE L1 7530 7574 -122 5 786 180 111 0 0 chr4 26408467 26408494 -129221626 + (TTC)n Simple_repeat Simple_repeat 2 28 0 5 786 276 231 26 69 chr4 26408613 26408729 -129221391 + Lx7 LINE L1 7586 7696 0 5 786 2196 89 10 3 chr4 26408793 26409097 -129221023 - L1_Mus2 LINE L1 0 6566 6261 5 786 23 33 0 0 chr4 26409979 26410009 -129220111 + AT_rich Low_complexity Low_complexity 1 30 0 5 786 1674 268 20 25 chr4 26410158 26410602 -129219518 - Lx9 LINE L1 -884 6760 6319 5 786 211 323 28 97 chr4 26411149 26411293 -129218827 - MIRb SINE MIR -118 150 17 5 786 351 0 0 0 chr4 26411686 26411725 -129218395 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 786 351 254 57 48 chr4 26411725 26411849 -129218271 - L1MC4a LINE L1 -1785 6097 5973 5 786 325 20 0 58 chr4 26411850 26411902 -129218218 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 786 990 120 28 0 chr4 26411928 26412070 -129218050 - B1_Mus2 SINE Alu 0 147 2 5 786 343 373 135 0 chr4 26412147 26412273 -129217847 - B1F1 SINE Alu -3 146 4 5 786 21 36 0 0 chr4 26413689 26413717 -129216403 + AT_rich Low_complexity Low_complexity 1 28 0 5 786 22 35 0 0 chr4 26414206 26414235 -129215885 + AT_rich Low_complexity Low_complexity 1 29 0 5 786 215 93 23 0 chr4 26414572 26414615 -129215505 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 5 786 1884 93 36 0 chr4 26415331 26415611 -129214509 - Lx3_Mus LINE L1 -13 6996 6707 5 786 3160 84 0 2 chr4 26415611 26416047 -129214073 + L1_Mur1 LINE L1 3826 4261 -1625 5 786 332 43 22 0 chr4 26416569 26416615 -129213505 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 786 338 358 28 6 chr4 26417078 26417255 -129212865 + B3A SINE B2 5 185 -13 5 786 2286 129 47 11 chr4 26417558 26417917 -129212203 + Lx LINE L1 6121 6492 -162 5 786 238 378 10 10 chr4 26417936 26417959 -129212161 - ID_B1 SINE B4 -45 179 82 5 786 246 347 13 0 chr4 26417959 26418034 -129212086 - PB1D10 SINE Alu -41 76 1 5 786 7373 86 14 0 chr4 26419897 26421484 -129208636 + L1_Mus2 LINE L1 4985 6566 0 5 786 304 340 30 59 chr4 26421668 26421837 -129208283 - B3A SINE B2 0 198 35 5 786 6212 99 6 9 chr4 26421860 26422919 -129207201 - L1_Mus1 LINE L1 0 6582 5586 5 786 402 173 0 0 chr4 26423076 26423151 -129206969 + (TTG)n Simple_repeat Simple_repeat 1 75 0 5 786 360 308 9 0 chr4 26423152 26423259 -129206861 - ID_B1 SINE B4 -1 223 116 5 786 359 288 77 48 chr4 26423366 26423402 -129206718 - RMER15 LTR ERVL -358 217 181 5 786 3624 170 29 49 chr4 26423402 26424174 -129205946 + RMER6A LTR ERVK 1 756 0 5 786 359 288 77 48 chr4 26424174 26424305 -129205815 - RMER15 LTR ERVL -395 180 45 5 786 1722 127 50 33 chr4 26424972 26425273 -129204847 + RLTR22_Mur LTR ERVK 1543 1848 0 5 786 1866 231 71 86 chr4 26425274 26425805 -129204315 + L1_Mur3 LINE L1 598 1132 -6580 5 786 1412 51 0 25 chr4 26425805 26426007 -129204113 + L1Md_F3 LINE L1 6386 6582 -2 5 786 1866 231 71 86 chr4 26426007 26426095 -129204025 + L1_Mur3 LINE L1 1133 1208 -6504 5 786 31 82 0 0 chr4 26426286 26426359 -129203761 + AT_rich Low_complexity Low_complexity 1 73 0 5 786 407 286 9 19 chr4 26426615 26426722 -129203398 + ID_B1 SINE B4 119 224 0 5 786 3187 85 43 31 chr4 26427006 26427457 -129202663 + L1_Mus3 LINE L1 6145 6614 -24 5 786 1018 50 7 28 chr4 26427457 26427602 -129202518 + L1_Mus1 LINE L1 6425 6566 -1 5 786 3187 85 43 31 chr4 26427602 26427635 -129202485 + L1_Mus3 LINE L1 6615 6635 -3 5 786 195 42 0 0 chr4 26427662 26427686 -129202434 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 786 655 248 108 61 chr4 26427822 26428109 -129202011 + RMER20B LTR ERVK 235 595 -32 5 786 187 386 17 17 chr4 26429930 26430046 -129200074 - MIR SINE MIR -21 241 126 5 786 191 114 0 28 chr4 26430733 26430769 -129199351 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 786 919 221 17 26 chr4 26430959 26431191 -129198929 - L1_Mur3 LINE L1 -296 5584 5355 5 786 7511 98 26 17 chr4 26431434 26432586 -129197534 + Lx3_Mus LINE L1 5825 6988 -21 5 786 237 65 0 0 chr4 26432586 26432617 -129197503 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 5 786 7511 98 26 17 chr4 26432617 26432638 -129197482 + Lx3_Mus LINE L1 6989 7009 0 5 786 703 320 5 5 chr4 26432676 26432883 -129197237 - B3 SINE B2 -3 213 7 5 786 994 276 57 0 chr4 26435730 26435976 -129194144 + Lx6 LINE L1 6890 7149 -311 5 786 7919 34 2 5 chr4 26435972 26436928 -129193192 - L1Md_F2 LINE L1 -1 6581 5629 5 786 2012 101 0 0 chr4 26436926 26437212 -129192908 + L1_Mm LINE L1 2763 3048 -2835 5 786 1038 285 16 22 chr4 26437209 26437525 -129192595 + Lx6 LINE L1 7136 7449 -11 5 786 594 41 0 0 chr4 26437911 26437984 -129192136 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 5 786 195 42 0 0 chr4 26437984 26438008 -129192112 + (CAT)n Simple_repeat Simple_repeat 3 26 0 5 786 731 191 22 0 chr4 26438112 26438248 -129191872 - RMER6D LTR ERVK -578 142 4 5 786 2861 181 8 21 chr4 26438251 26438881 -129191239 - RMER6-int LTR ERVK 0 3177 2652 5 786 1914 166 15 55 chr4 26438890 26439008 -129191112 - RMER6-int LTR ERVK -2568 609 491 5 786 3813 137 89 5 chr4 26439008 26439667 -129190453 + RLTR19B LTR ERVK 1 715 0 5 786 1914 165 24 36 chr4 26439667 26440119 -129190001 - RMER6-int LTR ERVK -2687 490 2 5 786 3179 188 47 17 chr4 26440120 26440819 -129189301 - RMER6D LTR ERVK 0 720 1 5 786 370 290 9 0 chr4 26440843 26440966 -129189154 - L1M2 LINE L1 -573 5739 5616 5 786 23 0 0 0 chr4 26440988 26441011 -129189109 + AT_rich Low_complexity Low_complexity 1 23 0 5 786 338 367 47 13 chr4 26441018 26441167 -129188953 - B3 SINE B2 -57 159 6 5 786 443 279 121 10 chr4 26441177 26441467 -129188653 - L1M2 LINE L1 -685 5606 5285 5 786 620 336 54 29 chr4 26442589 26442828 -129187292 - B4A SINE B4 -18 274 30 5 786 435 38 0 0 chr4 26442910 26442963 -129187157 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 786 1681 145 127 3 chr4 26442996 26443327 -129186793 - Lx3A LINE L1 -7 6974 6603 5 786 405 323 44 39 chr4 26443328 26443534 -129186586 - Lx8 LINE L1 -1005 6468 6262 5 786 189 0 0 0 chr4 26443761 26443782 -129186338 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 786 387 0 0 0 chr4 26443782 26443824 -129186296 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 786 423 0 0 0 chr4 26444473 26444520 -129185600 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 786 335 285 68 52 chr4 26444690 26444892 -129185228 + MTD LTR MaLR 12 259 -148 5 786 5365 150 51 2 chr4 26445067 26446003 -129184117 - Lx2 LINE L1 -2 6995 6014 5 786 3866 154 4 22 chr4 26446005 26446949 -129183171 + Lx2 LINE L1 5102 6018 -979 5 786 422 290 15 8 chr4 26446960 26447092 -129183028 + MTD LTR MaLR 287 419 0 5 786 258 32 0 0 chr4 26447205 26447236 -129182884 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 786 664 225 49 0 chr4 26448605 26448747 -129181373 + B1_Mur1 SINE Alu 1 149 0 5 786 188 35 35 0 chr4 26448751 26448780 -129181340 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 786 524 291 8 2 chr4 26449494 26449642 -129180478 + Lx7 LINE L1 6966 7110 -350 5 786 220 204 0 36 chr4 26449807 26449863 -129180257 + A-rich Low_complexity Low_complexity 2 55 0 5 786 267 194 44 15 chr4 26449878 26449946 -129180174 - Lx7 LINE L1 -355 7341 7272 5 786 1011 311 27 41 chr4 26449960 26450402 -129179718 + Lx9 LINE L1 6764 7199 -445 5 786 243 0 0 0 chr4 26450610 26450637 -129179483 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 786 223 274 0 0 chr4 26450638 26450689 -129179431 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 5 786 789 348 11 22 chr4 26452127 26452400 -129177720 + B4 SINE B4 11 280 -12 5 786 267 183 13 53 chr4 26452428 26452503 -129177617 + GA-rich Low_complexity Low_complexity 3 74 0 5 786 8450 41 5 1 chr4 26452673 26454423 -129175697 - L1Md_F3 LINE L1 -2 6582 4823 5 786 3747 239 38 10 chr4 26454476 26455310 -129174810 + Lx5 LINE L1 6179 7036 -14 5 786 182 37 37 0 chr4 26455310 26455337 -129174783 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 786 253 257 112 130 chr4 26456886 26457047 -129173073 + MLT1A0 LTR MaLR 39 196 -169 5 786 228 309 25 0 chr4 26457129 26457210 -129172910 + MLT1A0 LTR MaLR 289 371 -19 5 786 1035 133 14 53 chr4 26457477 26457684 -129172436 + Lx2A1 LINE L1 6804 7002 -6 6 786 21 36 0 0 chr4 26457696 26457724 -129172396 + AT_rich Low_complexity Low_complexity 1 28 0 6 786 290 351 54 0 chr4 26457731 26457842 -129172278 + ID_B1 SINE B4 84 200 -24 6 786 291 302 8 16 chr4 26457866 26457987 -129172133 + L1MC1 LINE L1 5779 5898 -435 6 786 277 315 42 7 chr4 26458024 26458168 -129171952 + L1MC1 LINE L1 5994 6142 -191 6 786 1006 149 23 0 chr4 26458305 26458480 -129171640 - Lx LINE L1 -1 6653 6475 6 786 534 217 0 16 chr4 26458477 26458599 -129171521 + Lx4B LINE L1 6935 7054 -4 6 786 1572 346 37 9 chr4 26458758 26459400 -129170720 + Lx8 LINE L1 6594 7253 -220 6 786 1783 75 12 4 chr4 26459569 26459823 -129170297 - L1Md_F2 LINE L1 0 6582 6327 6 786 285 29 0 0 chr4 26460041 26460075 -129170045 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 6 786 28 0 0 0 chr4 26460081 26460109 -129170011 + AT_rich Low_complexity Low_complexity 1 28 0 6 786 219 185 0 18 chr4 26460172 26460227 -129169893 + T-rich Low_complexity Low_complexity 5 58 0 6 786 1788 161 32 0 chr4 26460273 26460589 -129169531 - ORR1A3 LTR MaLR 0 326 1 6 786 1126 90 0 0 chr4 26461820 26461964 -129168156 + B1_Mm SINE Alu 2 145 -2 6 786 196 102 20 20 chr4 26461971 26462021 -129168099 + (TAAAAA)n Simple_repeat Simple_repeat 3 52 0 6 786 1706 204 75 0 chr4 26462992 26463326 -129166794 - ORR1B1 LTR MaLR -4 390 32 6 786 1113 164 135 0 chr4 26463961 26464169 -129165951 - ORR1C1 LTR MaLR 0 378 143 6 786 3172 99 8 27 chr4 26464404 26464892 -129165228 + L1_Mus3 LINE L1 6154 6632 -6 6 786 343 353 20 0 chr4 26464906 26465059 -129165061 - Lx8 LINE L1 -432 7041 6886 6 786 661 209 0 0 chr4 26465179 26465294 -129164826 - MTE2a LTR MaLR -52 327 213 6 786 1157 26 0 13 chr4 26465303 26465456 -129164664 + L1Md_F3 LINE L1 6419 6569 -15 6 786 509 301 51 34 chr4 26466527 26466878 -129163242 - L1M2 LINE L1 -1110 5030 4674 6 786 828 135 50 0 chr4 26466929 26467070 -129163050 - B1_Mus1 SINE Alu 0 148 1 6 786 300 256 48 68 chr4 26467248 26467395 -129162725 - L1M2 LINE L1 -1980 4163 4020 6 786 564 281 74 0 chr4 26467422 26467664 -129162456 - L1M2 LINE L1 -2254 3889 3630 6 786 223 180 66 0 chr4 26467764 26467825 -129162295 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 6 786 1334 166 23 23 chr4 26468239 26468504 -129161616 - RMER6C LTR ERVK -2 688 424 6 786 1056 209 45 9 chr4 26468580 26468802 -129161318 - RMER6C LTR ERVK -490 230 1 6 786 23 33 0 0 chr4 26469084 26469114 -129161006 + AT_rich Low_complexity Low_complexity 1 30 0 6 786 1751 272 59 22 chr4 26469380 26469984 -129160136 - Lx6 LINE L1 -25 7435 6456 6 786 288 0 0 0 chr4 26469984 26470016 -129160104 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 786 503 269 28 50 chr4 26470016 26470051 -129160069 - Lx6 LINE L1 -717 6743 6710 6 786 21 36 0 0 chr4 26470141 26470169 -129159951 + AT_rich Low_complexity Low_complexity 1 28 0 6 786 250 372 78 7 chr4 26470465 26470619 -129159501 - MLT1D LTR MaLR 0 505 341 6 786 1226 41 0 0 chr4 26471550 26471697 -129158423 + B1_Mm SINE Alu 1 147 0 6 786 318 148 36 36 chr4 26472586 26472670 -129157450 - L1M2 LINE L1 -937 5206 5092 6 786 227 79 0 26 chr4 26472688 26472727 -129157393 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 786 3136 151 13 23 chr4 26472817 26473448 -129156672 - Lx2B LINE L1 -826 6174 5534 6 786 3183 225 60 9 chr4 26473451 26474204 -129155916 + Lx2B LINE L1 6208 6998 -2 6 786 1281 240 127 5 chr4 26474241 26474660 -129155460 + L1_Mur3 LINE L1 4151 4620 -1260 6 786 985 217 112 66 chr4 26474934 26475055 -129155065 - RLTR20B2 LTR ERVK 0 577 465 6 786 297 0 0 0 chr4 26475055 26475088 -129155032 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 786 985 210 112 30 chr4 26475088 26475343 -129154777 - RLTR20B2 LTR ERVK -95 482 194 6 786 363 301 26 43 chr4 26475487 26475809 -129154311 - L1_Mm LINE L1 -1445 4698 4385 6 98 696 290 26 89 chr4 26476534 26476837 -129153283 - RLTR42-int LTR ERVK -794 4728 4445 6 787 1506 148 203 0 chr4 26477027 26477298 -129152822 - ORR1A2 LTR MaLR 0 327 2 6 787 5942 199 121 23 chr4 26477299 26478931 -129151189 - ORR1A2-int LTR MaLR 0 1792 1 6 787 909 141 7 0 chr4 26478932 26479074 -129151046 - ORR1A2 LTR MaLR -1 325 183 6 787 17686 152 30 20 chr4 26479077 26483014 -129147106 - L1Md_F LINE L1 -1605 4278 302 6 787 976 241 26 86 chr4 26483000 26483382 -129146738 - L1VL1 LINE L1 -5862 556 28 6 787 1849 221 26 19 chr4 26483719 26484097 -129146023 + Lx5 LINE L1 6652 7032 -18 6 787 351 0 0 0 chr4 26484097 26484136 -129145984 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 6 787 344 211 32 43 chr4 26484291 26484385 -129145735 + MT2B LTR ERVL 1 93 -440 6 787 1473 216 3 72 chr4 26484407 26484726 -129145394 - ORR1D1 LTR MaLR -72 302 6 6 787 1111 164 39 15 chr4 26484730 26484934 -129145186 - ORR1D1-int LTR MaLR 0 1370 1162 6 787 382 286 100 85 chr4 26484941 26485206 -129144914 + MT2B LTR ERVL 82 463 -138 6 787 1716 253 20 0 chr4 26485208 26485560 -129144560 - MTC LTR MaLR -61 360 2 6 787 3994 213 54 5 chr4 26485583 26485888 -129144232 + L1_Mur3 LINE L1 416 736 -6992 6 787 468 0 0 0 chr4 26485888 26485940 -129144180 + (CATCT)n Simple_repeat Simple_repeat 4 55 0 6 787 3994 209 74 4 chr4 26485940 26486621 -129143499 + L1_Mur3 LINE L1 737 1471 -4409 6 787 2307 211 55 25 chr4 26486621 26487258 -129142862 + L1_Mur3 LINE L1 1939 2594 -3286 6 787 2527 70 3 80 chr4 26487258 26487633 -129142487 - ORR1A1 LTR MaLR 0 346 1 6 787 11967 97 22 2 chr4 26487633 26489390 -129140730 - ORR1A1-int LTR MaLR 0 1792 1 6 787 25 0 0 0 chr4 26489390 26489415 -129140705 + AT_rich Low_complexity Low_complexity 1 25 0 6 787 40976 6 0 0 chr4 26489575 26495927 -129134193 - L1Md_A LINE L1 0 6582 230 6 787 2394 71 75 0 chr4 26495941 26496263 -129133857 - ORR1A1 LTR MaLR 0 346 1 6 787 528 229 7 14 chr4 26496263 26496409 -129133711 + L1_Mur3 LINE L1 2590 2734 -3146 6 787 4838 211 46 12 chr4 26496428 26497508 -129132612 - Lx3C LINE L1 0 6976 5860 6 787 2545 207 68 35 chr4 26497509 26498259 -129131861 + L1_Mur3 LINE L1 2922 3696 -2184 6 787 625 320 5 20 chr4 26498258 26498456 -129131664 + RMER1C Other Other 537 731 -611 6 787 2722 189 128 23 chr4 26498455 26499192 -129130928 + L1_Mur3 LINE L1 4217 5030 -850 6 787 393 105 0 0 chr4 26499194 26499251 -129130869 - L1VL2 LINE L1 -5978 357 301 6 787 201 74 0 0 chr4 26499291 26499318 -129130802 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 787 24 53 0 0 chr4 26499340 26499378 -129130742 + AT_rich Low_complexity Low_complexity 1 38 0 6 787 665 222 85 35 chr4 26499754 26499955 -129130165 + L1_Mur3 LINE L1 5036 5246 -634 6 787 656 129 13 26 chr4 26500000 26500151 -129129969 + L1_Mur3 LINE L1 5229 5377 -503 1 787 608 278 60 4 chr4 26500157 26500392 -129129728 + Lx7 LINE L1 5622 5869 -11 2 787 7534 86 1 2 chr4 26500385 26501720 -129128400 + L1_Mus2 LINE L1 5235 6565 -1 3 787 937 118 0 0 chr4 26501783 26501918 -129128202 + B1_Mus1 SINE Alu 1 135 -13 4 787 261 0 0 0 chr4 26501920 26501949 -129128171 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 787 1301 260 112 39 chr4 26501951 26502440 -129127680 + Lx7 LINE L1 5876 6400 -1296 2 787 289 215 179 75 chr4 26502538 26502686 -129127434 - RLTR18 LTR ERVK -134 482 225 6 787 1444 190 48 0 chr4 26502807 26503075 -129127045 + RMER1A Other Other 498 778 -252 7 787 6013 43 0 1 chr4 26503825 26504555 -129125565 + L1Md_T LINE L1 5854 6582 0 8 787 603 0 0 0 chr4 26504661 26504728 -129125392 + (TCC)n Simple_repeat Simple_repeat 3 69 0 9 787 295 21 64 0 chr4 26505299 26505346 -129124774 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 1 787 22 35 0 0 chr4 26505660 26505689 -129124431 + AT_rich Low_complexity Low_complexity 1 29 0 1 787 1560 177 26 63 chr4 26505893 26506249 -129123871 - RMER1C Other Other -3 1339 997 1 787 288 0 0 0 chr4 26506249 26506281 -129123839 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 787 1560 177 26 63 chr4 26506281 26506303 -129123817 - RMER1C Other Other -346 996 976 1 787 695 300 37 21 chr4 26506297 26506539 -129123581 + RMER1C Other Other 732 977 -365 1 787 322 299 67 55 chr4 26507173 26507302 -129122818 - L1M2 LINE L1 -2911 3232 3096 1 787 893 262 165 3 chr4 26507302 26507624 -129122496 - ORR1D1 LTR MaLR 0 374 1 1 787 322 298 85 48 chr4 26507624 26507907 -129122213 - L1M2 LINE L1 -3045 3095 2805 1 787 345 297 98 31 chr4 26507933 26508260 -129121860 - L1M2 LINE L1 -3581 2562 2214 1 787 1546 236 92 8 chr4 26508260 26508641 -129121479 + MTC LTR MaLR 1 413 -8 1 787 2720 183 99 16 chr4 26508891 26509525 -129120595 + RMER6A LTR ERVK 61 747 -9 1 787 687 269 0 59 chr4 26509525 26509746 -129120374 + MMERGLN-int LTR ERV1 4785 4992 -2564 1 787 420 357 11 29 chr4 26510364 26510641 -129119479 + MuRRS4-int LTR ERV1 4662 4933 -130 2 787 2983 89 98 16 chr4 26510736 26511228 -129118892 + RLTR47_MM LTR ERV1 1 532 0 2 787 314 319 92 23 chr4 26511570 26511743 -129118377 + LTR82B Low_complexity ERVL 142 326 -504 2 787 310 306 85 39 chr4 26511974 26512103 -129118017 + LTR82B Low_complexity ERVL 679 813 -17 2 787 1823 114 10 29 chr4 26512319 26512625 -129117495 + Lx2 LINE L1 6696 6995 -2 2 787 242 372 0 0 chr4 26512982 26513076 -129117044 + L2a LINE L2 2015 2108 -1311 2 787 270 0 0 0 chr4 26513154 26513184 -129116936 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 787 354 327 90 43 chr4 26513198 26513409 -129116711 + L2a LINE L2 2435 2655 -764 2 787 215 423 33 7 chr4 26513683 26513833 -129116287 + L2a LINE L2 3014 3167 -259 2 787 21 57 0 0 chr4 26513853 26513888 -129116232 + AT_rich Low_complexity Low_complexity 1 35 0 2 787 799 292 97 48 chr4 26513959 26514311 -129115809 + ORR1D2 LTR MaLR 1 369 -1 2 787 282 319 34 17 chr4 26514341 26514459 -129115661 - RMER5 LTR ERV1 -22 512 393 2 787 6999 34 0 0 chr4 26514948 26515776 -129114344 - L1Md_T LINE L1 -2 6580 5753 3 787 23 33 0 0 chr4 26517569 26517599 -129112521 + AT_rich Low_complexity Low_complexity 1 30 0 3 787 25 51 0 0 chr4 26518638 26518677 -129111443 + AT_rich Low_complexity Low_complexity 1 39 0 3 787 245 342 66 90 chr4 26521452 26521574 -129108546 + B3A SINE B2 66 184 -14 3 787 33 66 0 0 chr4 26521589 26521650 -129108470 + AT_rich Low_complexity Low_complexity 1 61 0 3 787 369 0 0 0 chr4 26522308 26522349 -129107771 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 787 21 0 0 0 chr4 26523010 26523031 -129107089 + AT_rich Low_complexity Low_complexity 1 21 0 3 787 608 334 38 23 chr4 26523765 26524240 -129105880 + L1M2 LINE L1 4134 4615 -1528 3 787 225 191 43 0 chr4 26524518 26524565 -129105555 - Lx8 LINE L1 -1574 5899 5851 3 787 374 212 0 0 chr4 26524626 26524706 -129105414 + L1M2 LINE L1 4636 4715 -1428 3 787 472 181 0 79 chr4 26524822 26524936 -129105184 + Lx9 LINE L1 7302 7406 -238 3 787 414 0 0 0 chr4 26524936 26524982 -129105138 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 787 180 0 0 0 chr4 26525028 26525048 -129105072 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 787 675 46 0 0 chr4 26525105 26525192 -129104928 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 4 787 1155 238 17 71 chr4 26525254 26525548 -129104572 + ORR1C1 LTR MaLR 1 278 -100 4 787 1448 305 75 21 chr4 26525552 26526085 -129104035 + MTE-int LTR MaLR 149 710 -870 4 787 4202 99 15 24 chr4 26526085 26526749 -129103371 - Lx3_Mus LINE L1 -519 6490 5833 4 787 3594 112 0 2 chr4 26526750 26527259 -129102861 + Lx3_Mus LINE L1 6502 7009 0 4 787 728 351 21 18 chr4 26527505 26527789 -129102331 + MTE-int LTR MaLR 681 965 -615 4 787 963 270 74 99 chr4 26527791 26528180 -129101940 - MT2A LTR ERVL -93 508 1 4 787 405 287 183 68 chr4 26528181 26528227 -129101893 + MTE-int LTR MaLR 1066 1120 -460 4 787 921 44 0 0 chr4 26528227 26528341 -129101779 + (GA)n Simple_repeat Simple_repeat 1 114 0 4 787 405 287 183 68 chr4 26528341 26528469 -129101651 + MTE-int LTR MaLR 1121 1266 -314 4 787 387 0 0 0 chr4 26528469 26528512 -129101608 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 787 408 40 0 0 chr4 26528512 26528561 -129101559 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 787 405 287 183 68 chr4 26528561 26528679 -129101441 + MTE-int LTR MaLR 1267 1392 -188 4 787 421 261 8 25 chr4 26528655 26528773 -129101347 + ORR1E-int LTR MaLR 1247 1362 -8 4 787 279 328 47 39 chr4 26528835 26528962 -129101158 + ORR1E LTR MaLR 32 159 -200 4 787 2758 152 0 2 chr4 26529008 26529450 -129100670 - Lx LINE L1 -12 6642 6202 5 787 450 395 25 5 chr4 26529454 26529655 -129100465 + ORR1D2 LTR MaLR 31 235 -135 5 787 1606 250 125 17 chr4 26529995 26530410 -129099710 - MT2A LTR ERVL -68 465 6 5 787 290 377 64 8 chr4 26530879 26531058 -129099062 + MIRb SINE MIR 64 246 -16 5 787 932 126 228 5 chr4 26531085 26531269 -129098851 + URR1A DNA MER1_type 1 225 -1 5 787 56 55 0 0 chr4 26531693 26531784 -129098336 + AT_rich Low_complexity Low_complexity 1 91 0 5 787 192 40 0 0 chr4 26532670 26532695 -129097425 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 787 279 0 0 0 chr4 26532718 26532749 -129097371 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 787 225 108 0 0 chr4 26532749 26532785 -129097335 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 787 2105 323 97 25 chr4 26533141 26533263 -129096857 - Lx8 LINE L1 -169 7304 7169 5 787 973 103 44 0 chr4 26533263 26533399 -129096721 + B1_Mus1 SINE Alu 1 142 -6 6 787 2105 323 97 25 chr4 26533399 26534464 -129095656 - Lx8 LINE L1 -305 7168 6032 5 787 499 323 74 129 chr4 26534613 26535061 -129095059 + RLTR23 LTR ERV1 8 430 0 6 787 31872 148 22 77 chr4 26535063 26536337 -129093783 + L1Md_F2 LINE L1 233 1434 -4449 6 787 2729 61 3 0 chr4 26536337 26536681 -129093439 - IAPLTR4 LTR ERVK 0 345 1 6 787 31872 93 13 10 chr4 26536681 26538180 -129091940 + L1Md_F2 LINE L1 1435 2960 -2923 6 787 1556 52 0 0 chr4 26538180 26538373 -129091747 - B2_Mm1a SINE B2 0 193 1 6 787 31872 95 14 9 chr4 26538373 26541816 -129088304 + L1Md_F2 LINE L1 2961 6404 -178 6 787 411 297 70 21 chr4 26541848 26542034 -129088086 + L1M2 LINE L1 4902 5096 -1050 6 787 255 321 94 65 chr4 26542148 26542455 -129087665 + L1_Mm LINE L1 5217 5558 -598 6 787 261 333 129 24 chr4 26542498 26542707 -129087413 + L1M2 LINE L1 5569 5799 -513 6 787 228 173 58 0 chr4 26542752 26542804 -129087316 + Lx8 LINE L1 5829 5883 -1590 6 787 4583 190 23 11 chr4 26542871 26544157 -129085963 - Lx4B LINE L1 -534 6524 5220 6 787 7425 86 14 0 chr4 26544156 26545439 -129084681 + L1_Mus1 LINE L1 5255 6567 0 6 787 7882 182 64 105 chr4 26545452 26547144 -129082976 - Lx4B LINE L1 -654 5223 3591 6 787 749 32 11 0 chr4 26547144 26547237 -129082883 + MTA_Mm LTR MaLR 307 400 0 7 787 8022 85 3 4 chr4 26547237 26548336 -129081784 + MTA_Mm-int LTR MaLR 1 1098 0 7 787 2900 87 8 2 chr4 26548336 26548730 -129081390 + MTA_Mm LTR MaLR 1 396 0 7 787 7882 182 64 105 chr4 26548730 26548994 -129081126 - Lx4B LINE L1 -2287 3590 3261 6 787 984 128 0 0 chr4 26548994 26549135 -129080985 - B1_Mus2 SINE Alu -6 141 1 7 787 7882 182 64 105 chr4 26549135 26549308 -129080812 - Lx4B LINE L1 -2617 3260 3090 6 787 2747 120 0 2 chr4 26549308 26549709 -129080411 - MTB LTR MaLR 0 400 1 7 787 7882 182 64 105 chr4 26549709 26549750 -129080370 - Lx4B LINE L1 -2788 3089 3051 6 787 531 160 0 0 chr4 26549757 26549851 -129080269 + CT-rich Low_complexity Low_complexity 1 94 0 7 787 943 83 0 53 chr4 26549851 26550041 -129080079 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 787 749 280 16 74 chr4 26551090 26551399 -129078721 + B4 SINE B4 2 292 0 7 787 278 232 109 20 chr4 26551560 26551661 -129078459 - Lx8 LINE L1 -26 7447 7338 7 787 239 226 17 9 chr4 26551662 26551778 -129078342 + CT-rich Low_complexity Low_complexity 1 116 0 7 787 319 282 160 29 chr4 26551832 26552007 -129078113 - Lx7 LINE L1 -361 7335 7138 7 787 7584 42 3 1 chr4 26552026 26552939 -129077181 - L1Md_F2 LINE L1 -12 6570 5656 7 787 286 259 44 66 chr4 26552944 26553035 -129077085 - Lx7 LINE L1 -554 7142 7054 7 787 1652 276 69 8 chr4 26553108 26553602 -129076518 - Lx6 LINE L1 -9 7451 6928 8 787 252 381 8 53 chr4 26553714 26553847 -129076273 - RSINE1 SINE B4 0 165 39 8 787 22 70 0 0 chr4 26553953 26553996 -129076124 + AT_rich Low_complexity Low_complexity 1 43 0 8 787 216 0 0 0 chr4 26554300 26554324 -129075796 + (T)n Simple_repeat Simple_repeat 1 24 0 8 787 252 302 81 0 chr4 26554382 26554468 -129075652 + MLT1H LTR MaLR 115 207 -342 8 787 22 35 0 0 chr4 26554847 26554876 -129075244 + AT_rich Low_complexity Low_complexity 1 29 0 8 787 25 0 0 0 chr4 26554978 26555003 -129075117 + AT_rich Low_complexity Low_complexity 1 25 0 8 787 253 389 0 58 chr4 26555572 26555692 -129074428 - PB1D10 SINE Alu -2 115 3 8 787 574 68 0 22 chr4 26555851 26555941 -129074179 + (TA)n Simple_repeat Simple_repeat 2 89 0 8 787 23 78 0 0 chr4 26557313 26557364 -129072756 + AT_rich Low_complexity Low_complexity 1 51 0 8 787 26 30 0 0 chr4 26558384 26558417 -129071703 + AT_rich Low_complexity Low_complexity 1 33 0 9 787 2117 164 8 5 chr4 26558640 26559009 -129071111 - Lx3B LINE L1 -3 6970 6601 9 787 4372 159 24 8 chr4 26559599 26560767 -129069353 + Lx3C LINE L1 5114 6310 -666 9 787 1592 139 19 4 chr4 26560767 26561034 -129069086 - L1_Mm LINE L1 -1273 4610 4340 9 787 7750 89 5 1 chr4 26561034 26562184 -129067936 + L1_Mus3 LINE L1 5515 6638 0 9 787 2681 189 49 10 chr4 26562184 26562815 -129067305 + Lx3C LINE L1 6304 7007 -2 9 787 348 24 0 0 chr4 26563975 26564016 -129066104 + (TA)n Simple_repeat Simple_repeat 2 42 0 9 787 270 0 0 0 chr4 26564377 26564407 -129065713 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 9 787 1523 246 14 54 chr4 26565608 26566132 -129063988 - RLTR31_Mur LTR ERVK 0 561 1 9 787 225 0 0 0 chr4 26566200 26566225 -129063895 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 9 787 236 30 30 0 chr4 26566352 26566385 -129063735 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 9 787 297 109 0 0 chr4 26566385 26566431 -129063689 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 1 787 2766 234 8 31 chr4 26566449 26567057 -129063063 - Lx5 LINE L1 -55 6995 6402 1 787 3967 188 58 29 chr4 26567073 26567895 -129062225 + Lx5 LINE L1 5587 6432 -618 1 787 2061 179 61 61 chr4 26568020 26568461 -129061659 + RLTR41 LTR ERV1 1 441 -5 1 787 1758 169 6 9 chr4 26568465 26568787 -129061333 + Lx2 LINE L1 6677 6997 0 1 787 480 72 0 0 chr4 26569151 26569220 -129060900 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 787 23 0 0 0 chr4 26569795 26569818 -129060302 + AT_rich Low_complexity Low_complexity 1 23 0 1 787 891 67 0 0 chr4 26569873 26569992 -129060128 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 787 682 330 49 12 chr4 26569992 26570317 -129059803 - Lx9 LINE L1 -179 7465 7129 1 787 267 380 40 76 chr4 26570423 26570699 -129059421 - MT2A LTR ERVL -98 435 170 1 787 388 55 0 0 chr4 26570708 26570763 -129059357 + L1_Mus2 LINE L1 6510 6564 -2 1 787 195 42 0 0 chr4 26570856 26570880 -129059240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 787 1292 69 0 0 chr4 26570892 26571066 -129059054 - L1_Mus1 LINE L1 0 6567 6394 1 787 2465 259 86 18 chr4 26571133 26571869 -129058251 - Lx9 LINE L1 -519 7125 6340 1 787 24 0 0 0 chr4 26571882 26571906 -129058214 + AT_rich Low_complexity Low_complexity 1 24 0 1 787 975 276 32 18 chr4 26571957 26572313 -129057807 - L1_Rod LINE L1 -962 4924 4344 1 787 2333 213 42 10 chr4 26572343 26572404 -129057716 - RLTR20B1 LTR ERVK -44 519 459 1 787 183 42 0 0 chr4 26572404 26572428 -129057692 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 787 2333 213 42 10 chr4 26572428 26572869 -129057251 - RLTR20B1 LTR ERVK -105 458 1 1 787 4755 131 95 22 chr4 26572981 26573517 -129056603 + RLTR13B3 LTR ERVK 1 607 -322 1 787 2244 12 0 4 chr4 26573517 26573776 -129056344 - L1Md_A LINE L1 0 6582 6325 1 787 4755 131 95 22 chr4 26573776 26574105 -129056015 + RLTR13B3 LTR ERVK 608 929 0 1 787 721 286 73 50 chr4 26574116 26574785 -129055335 - L1_Mur3 LINE L1 -1926 4217 3521 1 787 661 255 147 25 chr4 26574882 26575236 -129054884 - L1_Rod LINE L1 -6461 711 315 1 787 4211 76 14 15 chr4 26575405 26575996 -129054124 - L1_Mus3 LINE L1 -1 6637 6048 1 787 34 0 0 0 chr4 26576106 26576140 -129053980 + AT_rich Low_complexity Low_complexity 1 34 0 1 787 601 333 6 18 chr4 26576668 26576833 -129053287 + B3 SINE B2 1 163 -53 1 787 216 67 0 0 chr4 26576848 26576878 -129053242 + (CAT)n Simple_repeat Simple_repeat 3 32 0 1 787 933 331 41 11 chr4 26576982 26577348 -129052772 + Tigger10 DNA Tigger 390 766 -1077 1 787 234 116 0 0 chr4 26577520 26577563 -129052557 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 787 578 126 10 0 chr4 26577720 26577823 -129052297 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 1 787 2951 241 71 5 chr4 26578312 26579155 -129050965 + Lx9 LINE L1 6612 7510 -134 1 787 281 226 32 11 chr4 26579180 26579274 -129050846 + Lx9 LINE L1 7422 7517 -127 1 787 435 188 17 8 chr4 26579289 26579407 -129050713 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 787 467 297 65 55 chr4 26579436 26579839 -129050281 + Lx9 LINE L1 7111 7517 -127 1 787 33 43 0 0 chr4 26580233 26580280 -129049840 + AT_rich Low_complexity Low_complexity 1 47 0 1 787 6465 28 17 4 chr4 26580420 26581203 -129048917 - L1Md_F3 LINE L1 0 6584 5792 1 787 862 299 48 0 chr4 26581639 26581890 -129048230 + Tigger10 DNA Tigger 1473 1735 -108 1 787 335 250 0 0 chr4 26582392 26582468 -129047652 + B3 SINE B2 131 206 -10 1 787 1323 180 8 16 chr4 26582544 26582787 -129047333 + MTC LTR MaLR 2 242 -179 1 787 625 230 8 8 chr4 26582775 26582902 -129047218 - B3 SINE B2 -74 142 16 1 787 349 307 80 40 chr4 26583101 26583376 -129046744 + Lx8 LINE L1 7186 7471 -2 1 787 25 0 0 0 chr4 26583376 26583401 -129046719 + AT_rich Low_complexity Low_complexity 1 25 0 1 787 648 36 26 51 chr4 26583602 26583719 -129046401 - L1Md_F3 LINE L1 -1 6583 6470 1 787 674 269 28 28 chr4 26583956 26584172 -129045948 - B3A SINE B2 -6 210 1 1 787 210 71 0 0 chr4 26584255 26584283 -129045837 + (T)n Simple_repeat Simple_repeat 1 28 0 1 787 41128 6 0 0 chr4 26584424 26590791 -129039329 - L1Md_A LINE L1 0 6582 214 1 787 4163 87 17 3 chr4 26590881 26591461 -129038659 + L1_Mus2 LINE L1 5978 6565 -1 1 787 44 20 0 0 chr4 26591461 26591512 -129038608 + AT_rich Low_complexity Low_complexity 1 51 0 1 787 2660 43 0 12 chr4 26591636 26591963 -129038157 - L1Md_F2 LINE L1 -635 5947 5625 1 787 3949 55 2 8 chr4 26591963 26592484 -129037636 + L1Md_F2 LINE L1 6073 6582 0 1 787 499 397 35 18 chr4 26592513 26592913 -129037207 - Lx8 LINE L1 -223 7250 6844 1 787 430 282 84 24 chr4 26593068 26593235 -129036885 + RMER15 LTR ERVL 277 453 -122 1 787 183 42 0 0 chr4 26593248 26593272 -129036848 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 1 787 6580 133 10 9 chr4 26593358 26594420 -129035700 - Lx3A LINE L1 -2 6979 5913 1 787 182 62 31 0 chr4 26594420 26594452 -129035668 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 787 6580 133 10 9 chr4 26594452 26594476 -129035644 - Lx3A LINE L1 -1069 5912 5892 1 787 850 311 65 31 chr4 26594490 26594815 -129035305 + MTEb LTR MaLR 36 371 -8 1 787 620 87 11 0 chr4 26595121 26595213 -129034907 + (GGA)n Simple_repeat Simple_repeat 2 94 0 1 787 996 267 76 61 chr4 26596334 26596796 -129033324 + RLTR12B LTR ERVK 46 514 -14 1 787 266 314 41 33 chr4 26598742 26598864 -129031256 + MIR SINE MIR 74 196 -66 1 787 1537 202 149 3 chr4 26598899 26599262 -129030858 + RMER4B LTR ERVK 111 526 -59 1 787 1442 23 0 6 chr4 26599262 26599437 -129030683 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 1 787 22 35 0 0 chr4 26599590 26599619 -129030501 + AT_rich Low_complexity Low_complexity 1 29 0 1 787 2800 140 12 32 chr4 26599619 26600115 -129030005 - Lx2 LINE L1 -8 6989 6504 1 787 4878 178 30 37 chr4 26600117 26601749 -129028371 + Lx2 LINE L1 4889 6499 -498 1 787 1431 82 0 14 chr4 26601770 26601981 -129028139 - L1Md_F2 LINE L1 -12 6570 6363 1 787 1443 290 63 49 chr4 26601982 26602552 -129027568 - RMER19B LTR ERVK -20 882 305 1 787 220 65 21 42 chr4 26602942 26602990 -129027130 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 787 892 143 97 31 chr4 26603021 26603125 -129026995 - Lx LINE L1 -13 6641 6520 1 787 216 0 0 0 chr4 26603125 26603149 -129026971 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 1 787 892 143 97 31 chr4 26603149 26603239 -129026881 - Lx LINE L1 -135 6519 6435 1 787 2913 117 46 2 chr4 26603237 26603675 -129026445 + Lx LINE L1 5961 6417 -237 1 787 726 341 72 17 chr4 26603697 26604058 -129026062 - MTE-int LTR MaLR -1191 389 9 1 787 240 271 113 48 chr4 26604070 26604194 -129025926 - MTD LTR MaLR -259 160 29 1 787 624 27 0 0 chr4 26605711 26605785 -129024335 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1 787 406 48 95 0 chr4 26605793 26605856 -129024264 - L1Md_F2 LINE L1 -1 6581 6513 1 787 1250 301 89 24 chr4 26606048 26606552 -129023568 + Lx8 LINE L1 6374 6910 -563 1 787 829 302 89 35 chr4 26606609 26607014 -129023106 + Lx8 LINE L1 7038 7464 -9 1 98 558 43 0 0 chr4 26607559 26607628 -129022492 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 788 6002 199 40 38 chr4 26607666 26609344 -129020776 - Lx5 LINE L1 0 7050 5350 1 788 7269 123 33 5 chr4 26609351 26610862 -129019258 - L1_Mus2 LINE L1 0 6566 4988 1 788 1361 315 37 45 chr4 26610873 26611135 -129018985 + L1_Mur3 LINE L1 1036 1293 -4587 1 788 315 0 0 0 chr4 26611135 26611170 -129018950 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 788 1361 254 74 38 chr4 26611170 26611740 -129018380 + L1_Mur3 LINE L1 1294 1896 -3984 1 788 1347 260 70 8 chr4 26611796 26612183 -129017937 - MTD LTR MaLR -3 416 6 1 788 3614 76 0 0 chr4 26612354 26612827 -129017293 + L1Md_F2 LINE L1 6110 6582 0 1 788 1657 236 57 0 chr4 26613592 26613944 -129016176 - ORR1C1 LTR MaLR 0 378 7 1 788 1861 223 109 23 chr4 26613945 26614469 -129015651 - ORR1C1-int LTR MaLR 0 1509 941 1 788 813 49 0 0 chr4 26614472 26614574 -129015546 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1 788 333 0 0 0 chr4 26614581 26614618 -129015502 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 788 1737 90 8 0 chr4 26614618 26614862 -129015258 - L1_Mus3 LINE L1 -17 6621 6376 1 788 3463 79 0 2 chr4 26614862 26615318 -129014802 + L1_Mus3 LINE L1 5916 6370 -268 1 788 2322 258 40 36 chr4 26615320 26616120 -129014000 - ORR1C1-int LTR MaLR -554 816 1 1 788 1143 196 64 120 chr4 26616120 26616527 -129013593 - ORR1C1 LTR MaLR 0 384 1 1 788 201 212 0 0 chr4 26616888 26616921 -129013199 + L2c LINE L2 3270 3302 -85 1 788 203 128 0 41 chr4 26616922 26616971 -129013149 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 788 328 325 63 8 chr4 26617969 26618096 -129012024 - B3 SINE B2 -3 213 80 1 788 2629 276 80 25 chr4 26618198 26618327 -129011793 - Lx9 LINE L1 0 7644 7479 1 788 363 96 0 0 chr4 26618327 26618379 -129011741 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 788 2629 276 80 25 chr4 26618379 26619053 -129011067 - Lx9 LINE L1 -166 7478 6789 1 788 495 0 0 0 chr4 26619053 26619108 -129011012 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 788 747 70 202 0 chr4 26619108 26619222 -129010898 - B1_Mus1 SINE Alu -10 138 2 1 788 2629 276 80 25 chr4 26619222 26619357 -129010763 - Lx9 LINE L1 -856 6788 6655 1 788 359 333 45 6 chr4 26619419 26619597 -129010523 + Lx9 LINE L1 7267 7451 -193 1 788 216 0 0 0 chr4 26622336 26622360 -129007760 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 788 560 83 40 40 chr4 26622360 26622536 -129007584 + T-rich Low_complexity Low_complexity 3 178 0 1 788 425 366 35 31 chr4 26622538 26622826 -129007294 - MLT1C LTR MaLR -149 318 30 1 788 27 62 0 0 chr4 26624202 26624250 -129005870 + AT_rich Low_complexity Low_complexity 1 48 0 1 788 833 218 143 11 chr4 26624251 26624538 -129005582 - Lx9 LINE L1 -1 7643 7319 1 788 362 294 10 0 chr4 26624538 26624640 -129005480 + ID_B1 SINE B4 104 206 -18 1 788 1410 233 76 6 chr4 26624810 26625151 -129004969 + ORR1C1 LTR MaLR 1 365 -13 1 788 22 0 0 0 chr4 26625282 26625304 -129004816 + AT_rich Low_complexity Low_complexity 1 22 0 1 788 40 0 0 0 chr4 26625594 26625634 -129004486 + AT_rich Low_complexity Low_complexity 1 40 0 1 788 541 318 5 63 chr4 26625649 26625854 -129004266 + B3A SINE B2 6 198 0 1 788 515 234 437 0 chr4 26626234 26626401 -129003719 + RMER13A LTR ERVK 621 860 0 1 788 357 273 37 55 chr4 26627877 26628040 -129002080 - L1MCa LINE L1 -4549 1959 1800 1 788 2115 239 57 14 chr4 26628196 26628757 -129001363 + MERVK26-int LTR ERVK 2347 2931 -3988 2 788 1116 82 0 0 chr4 26628764 26628911 -129001209 + B1_Mus2 SINE Alu 1 147 0 2 788 414 114 0 0 chr4 26628911 26628990 -129001130 + (A)n Simple_repeat Simple_repeat 1 79 0 2 788 598 244 36 24 chr4 26629017 26629185 -129000935 + MERVK26-int LTR ERVK 2947 3116 -3803 2 788 1767 122 31 0 chr4 26629185 26629472 -129000648 - L1Md_A LINE L1 -6159 565 270 2 788 5029 38 2 0 chr4 26629472 26630073 -129000047 + L1Md_T LINE L1 5981 6582 0 2 788 9077 228 59 15 chr4 26630098 26632219 -128997901 + MERVK26-int LTR ERVK 3106 5319 -1600 2 788 2666 240 55 12 chr4 26632335 26632985 -128997135 + MERVK26-int LTR ERVK 6178 6855 -64 2 788 2019 132 19 52 chr4 26633067 26633490 -128996630 + RMER17C LTR ERVK 2 410 0 2 788 22 0 0 0 chr4 26633813 26633835 -128996285 + AT_rich Low_complexity Low_complexity 1 22 0 2 788 264 108 0 0 chr4 26633856 26633893 -128996227 - RLTR25A LTR ERVK 0 1103 1067 2 788 622 97 9 46 chr4 26633894 26634002 -128996118 + Lx LINE L1 6424 6527 -127 2 788 3107 198 155 100 chr4 26634003 26635026 -128995094 - RLTR25A LTR ERVK -23 1080 1 2 788 224 263 0 55 chr4 26635871 26635956 -128994164 + GA-rich Low_complexity Low_complexity 1 80 0 2 788 351 266 23 11 chr4 26636009 26636128 -128993992 - B1_Mur2 SINE Alu 0 149 1 2 788 21 57 0 0 chr4 26636131 26636166 -128993954 + AT_rich Low_complexity Low_complexity 1 35 0 2 788 499 216 50 20 chr4 26636560 26636701 -128993419 - ORR1D1 LTR MaLR -203 171 13 2 788 3853 113 0 12 chr4 26638560 26639124 -128990996 - L1_Mus4 LINE L1 0 6636 6080 2 788 665 108 0 26 chr4 26639148 26639166 -128990954 + (TTTC)n Simple_repeat Simple_repeat 3 18 0 2 788 1077 140 0 0 chr4 26639166 26639344 -128990776 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 788 665 108 0 26 chr4 26639344 26639439 -128990681 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 2 788 207 284 0 0 chr4 26639429 26639472 -128990648 + C-rich Low_complexity Low_complexity 34 76 0 2 788 1082 123 0 11 chr4 26639472 26639653 -128990467 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 2 788 207 284 0 0 chr4 26639653 26639683 -128990437 + C-rich Low_complexity Low_complexity 4 33 0 2 788 1160 102 0 11 chr4 26639687 26639866 -128990254 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 2 788 242 56 0 27 chr4 26639866 26639903 -128990217 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 2 788 180 0 0 0 chr4 26639992 26640012 -128990108 + (T)n Simple_repeat Simple_repeat 1 20 0 2 788 1012 109 7 7 chr4 26640012 26640159 -128989961 - B1_Mus1 SINE Alu 0 148 2 2 788 340 373 56 0 chr4 26640376 26640502 -128989618 + RSINE1 SINE B4 9 141 -24 2 788 396 0 0 0 chr4 26640767 26640811 -128989309 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 788 546 119 0 0 chr4 26640811 26640894 -128989226 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 788 1078 95 0 7 chr4 26641173 26641322 -128988798 + B1_Mus1 SINE Alu 1 148 0 2 788 31 68 0 0 chr4 26642019 26642078 -128988042 + AT_rich Low_complexity Low_complexity 1 59 0 2 788 189 74 0 0 chr4 26642146 26642173 -128987947 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2 788 458 209 7 0 chr4 26642535 26642674 -128987446 + (TG)n Simple_repeat Simple_repeat 1 140 0 2 788 373 277 129 71 chr4 26644447 26644587 -128985533 - RMER30 DNA MER1_type -11 191 44 2 788 329 202 56 0 chr4 26644716 26644805 -128985315 + L1MD LINE L1 4493 4586 -1560 2 788 369 0 0 0 chr4 26644914 26644955 -128985165 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 788 33 25 0 0 chr4 26645014 26645054 -128985066 + AT_rich Low_complexity Low_complexity 1 40 0 2 788 626 254 21 113 chr4 26645366 26645694 -128984426 - L1Md_F LINE L1 -5987 532 235 2 788 907 218 11 35 chr4 26645685 26645946 -128984174 - L1VL1 LINE L1 -6123 299 45 2 788 6820 47 0 4 chr4 26645946 26646785 -128983335 + L1Md_F2 LINE L1 5731 6566 -16 2 788 636 14 0 0 chr4 26646786 26646859 -128983261 + (GAA)n Simple_repeat Simple_repeat 2 74 0 2 788 290 359 31 8 chr4 26647975 26648104 -128982016 + L2a LINE L2 3293 3424 -2 2 788 529 250 14 99 chr4 26649436 26649649 -128980471 - Lx9 LINE L1 -205 7439 7245 2 788 2157 135 3 0 chr4 26649666 26649992 -128980128 - ORR1A2 LTR MaLR 0 327 1 2 788 6617 140 52 11 chr4 26649993 26651209 -128978911 - ORR1A2-int LTR MaLR -1 1962 697 2 788 467 248 84 60 chr4 26651087 26651254 -128978866 - MT2B2 LTR ERVL -333 251 81 2 788 1775 178 10 0 chr4 26651273 26651587 -128978533 - ORR1A2-int LTR MaLR -1646 317 1 2 788 1152 151 99 35 chr4 26651587 26651854 -128978266 - ORR1A2 LTR MaLR 0 326 1 2 788 414 259 125 0 chr4 26651859 26651971 -128978149 + Lx9 LINE L1 6735 6860 -784 2 788 1623 184 54 124 chr4 26651973 26652458 -128977662 + RLTR11B LTR ERVK 3 453 0 2 788 369 0 0 0 chr4 26652544 26652585 -128977535 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 788 35 24 0 0 chr4 26652861 26652903 -128977217 + AT_rich Low_complexity Low_complexity 1 42 0 2 788 2595 114 63 2 chr4 26652926 26653340 -128976780 + Lx3_Mus LINE L1 6559 6997 -12 2 788 1029 254 42 82 chr4 26653442 26653999 -128976121 + MYSERV16_I-int LTR ERVK 335 782 -1544 2 788 227 317 103 72 chr4 26654011 26654205 -128975915 + RMER4A LTR ERVK 266 465 -1 2 788 3183 243 68 29 chr4 26654269 26655318 -128974802 + MYSERV6-int LTR ERVK 7814 8903 -56 2 788 1778 218 74 7 chr4 26655427 26655848 -128974272 + RLTR11B LTR ERVK 5 453 0 2 788 875 217 45 24 chr4 26655850 26656096 -128974024 + Lx9 LINE L1 6858 7108 -536 2 788 416 300 82 31 chr4 26657260 26657456 -128972664 + B3 SINE B2 1 206 -10 2 788 497 408 10 15 chr4 26657636 26657835 -128972285 + B4A SINE B4 5 202 -90 2 788 331 345 0 0 chr4 26658269 26658356 -128971764 + RSINE1 SINE B4 11 97 -68 2 788 293 266 92 23 chr4 26658524 26658655 -128971465 - B1F SINE Alu -1 148 9 2 788 861 76 0 0 chr4 26658937 26659055 -128971065 + (CA)n Simple_repeat Simple_repeat 2 119 0 2 788 1531 53 0 5 chr4 26659593 26659784 -128970336 - B2_Mm1t SINE B2 -3 190 1 2 788 23 0 0 0 chr4 26660024 26660047 -128970073 + AT_rich Low_complexity Low_complexity 1 23 0 2 788 261 344 80 0 chr4 26660113 26660238 -128969882 - ID_B1 SINE B4 -10 214 80 2 788 31 0 0 0 chr4 26662191 26662222 -128967898 + AT_rich Low_complexity Low_complexity 1 31 0 2 788 225 0 0 0 chr4 26663749 26663774 -128966346 + (A)n Simple_repeat Simple_repeat 1 25 0 2 788 402 287 157 0 chr4 26664721 26664836 -128965284 - ID_B1 SINE B4 -3 221 89 2 788 1410 130 29 4 chr4 26665425 26665664 -128964456 - L1_Mus3 LINE L1 -7 6631 6387 2 788 2960 140 4 0 chr4 26665665 26666123 -128963997 + L1_Mm LINE L1 5235 5694 -189 2 788 1854 145 33 36 chr4 26666173 26666226 -128963894 - ORR1A4 LTR MaLR 0 329 277 2 788 1403 201 3 43 chr4 26666226 26666425 -128963695 - Lx LINE L1 -1 6653 6462 2 788 4625 144 28 58 chr4 26666425 26667356 -128962764 + RMER17A2 LTR ERVK 1 903 -3 2 788 1403 201 3 43 chr4 26667356 26667479 -128962641 - Lx LINE L1 -193 6461 6344 2 788 1854 145 33 36 chr4 26667479 26667755 -128962365 - ORR1A4 LTR MaLR -53 276 2 2 788 629 237 51 75 chr4 26668034 26668248 -128961872 - B3 SINE B2 -1 215 7 2 788 4170 237 102 1 chr4 26668447 26669432 -128960688 + Lx6 LINE L1 6375 7458 -2 2 788 237 376 133 31 chr4 26669467 26669889 -128960231 + LTR86C LTR ERVL 134 598 -23 2 788 23 33 0 0 chr4 26670075 26670105 -128960015 + AT_rich Low_complexity Low_complexity 1 30 0 2 788 459 0 0 0 chr4 26670157 26670208 -128959912 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 788 692 115 0 46 chr4 26670209 26670318 -128959802 + ORR1A4 LTR MaLR 166 269 -60 2 788 683 178 0 0 chr4 26670318 26670436 -128959684 + Lx LINE L1 6347 6464 -190 2 788 986 149 12 6 chr4 26670436 26670605 -128959515 - RMER17D2 LTR ERVK -2 807 638 2 788 1793 247 93 72 chr4 26670923 26671663 -128958457 - MTD-int LTR MaLR -336 762 1 2 788 857 255 214 12 chr4 26671664 26672009 -128958111 - MTD LTR MaLR 0 419 5 2 788 274 230 44 9 chr4 26672579 26672693 -128957427 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 788 33007 67 5 5 chr4 26672827 26674112 -128956008 - L1Md_F2 LINE L1 -3 6579 5296 2 788 2744 35 14 12 chr4 26674112 26674458 -128955662 - L1Md_F2 LINE L1 0 6582 6236 2 788 33007 76 11 16 chr4 26674458 26677812 -128952308 - L1Md_F2 LINE L1 -588 5295 1963 2 788 279 54 0 0 chr4 26677812 26677849 -128952271 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 788 33007 115 17 25 chr4 26677849 26679353 -128950767 - L1Md_F2 LINE L1 -3921 1962 481 2 788 795 108 0 0 chr4 26679931 26680051 -128950069 + (TA)n Simple_repeat Simple_repeat 2 121 0 2 788 1084 90 0 0 chr4 26680140 26680284 -128949836 - B1_Mm SINE Alu 0 147 4 2 788 541 50 12 0 chr4 26681549 26681629 -128948491 + L1Md_F2 LINE L1 6502 6582 0 2 788 3691 99 23 4 chr4 26681979 26682507 -128947613 - L1_Mus1 LINE L1 -302 5581 5044 2 788 6750 97 12 1 chr4 26682494 26683457 -128946663 + L1_Mus1 LINE L1 5593 6566 -1 2 788 32 0 0 0 chr4 26684091 26684123 -128945997 + AT_rich Low_complexity Low_complexity 1 32 0 2 788 533 256 39 107 chr4 26684123 26684321 -128945799 - Lx9 LINE L1 -20 7624 7440 2 788 369 0 0 0 chr4 26684321 26684362 -128945758 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 788 533 256 39 107 chr4 26684362 26684473 -128945647 - Lx9 LINE L1 -205 7439 7337 2 788 241 257 84 14 chr4 26684463 26684534 -128945586 - Lx9 LINE L1 -594 7050 6975 2 788 1516 305 77 22 chr4 26684535 26685607 -128944513 + Lx9 LINE L1 5636 6945 -699 2 788 21 36 0 0 chr4 26685823 26685851 -128944269 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 325 313 20 10 chr4 26686353 26686453 -128943667 - Lx9 LINE L1 -1110 6534 6434 2 788 376 358 21 5 chr4 26686563 26686757 -128943363 + B3A SINE B2 1 197 -1 2 788 354 343 34 10 chr4 26686958 26687167 -128942953 - Lx9 LINE L1 -1655 5989 5776 2 788 1153 276 104 40 chr4 26687160 26687942 -128942178 + L1_Rod LINE L1 4494 5325 -522 2 788 2441 258 60 68 chr4 26687956 26688845 -128941275 + Lx7 LINE L1 6811 7692 -4 2 788 733 293 123 58 chr4 26688851 26689249 -128940871 + L1_Rod LINE L1 5327 5750 -97 2 788 230 318 129 54 chr4 26690937 26691030 -128939090 + LTR85b LTR Gypsy? 46 145 -639 2 788 467 208 32 8 chr4 26691865 26691991 -128938129 - Lx5 LINE L1 0 7050 6922 2 788 183 370 38 30 chr4 26691997 26692128 -128937992 - L3 LINE CR1 -53 4436 4305 2 788 31 26 0 0 chr4 26693424 26693462 -128936658 + AT_rich Low_complexity Low_complexity 1 38 0 2 788 40 29 0 41 chr4 26694707 26694780 -128935340 + AT_rich Low_complexity Low_complexity 1 70 0 2 788 1666 75 182 4 chr4 26696351 26696620 -128933500 - L1_Mus2 LINE L1 -1 6565 6249 2 788 21 0 0 0 chr4 26697652 26697673 -128932447 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 501 62 0 0 chr4 26699292 26699357 -128930763 + (CTTA)n Simple_repeat Simple_repeat 2 66 0 2 788 21 57 0 0 chr4 26699395 26699430 -128930690 + AT_rich Low_complexity Low_complexity 1 35 0 3 788 2906 174 41 34 chr4 26699439 26699930 -128930190 - Lx3C LINE L1 0 6976 6501 3 788 645 96 0 0 chr4 26699930 26700024 -128930096 + (CATAG)n Simple_repeat Simple_repeat 4 97 0 3 788 2906 174 41 34 chr4 26700024 26700115 -128930005 - Lx3C LINE L1 -476 6500 6392 3 788 1306 111 14 14 chr4 26700101 26700321 -128929799 - L1_Mus3 LINE L1 0 6638 6419 3 788 1518 134 34 0 chr4 26700334 26700573 -128929547 - Lx3C LINE L1 -582 6394 6148 3 788 466 257 53 64 chr4 26700650 26700837 -128929283 + Lx7 LINE L1 7200 7384 -312 3 788 342 0 0 0 chr4 26700890 26700928 -128929192 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 788 976 128 0 26 chr4 26701052 26701204 -128928916 + B1_Mus1 SINE Alu 1 148 0 3 788 212 120 20 0 chr4 26701204 26701254 -128928866 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 788 9171 104 24 0 chr4 26701254 26703336 -128926784 + L1_Mus2 LINE L1 4427 6565 -1 3 788 947 147 37 21 chr4 26703347 26703535 -128926585 + B2_Mm2 SINE B2 2 192 -3 3 788 24 32 0 0 chr4 26703601 26703632 -128926488 + AT_rich Low_complexity Low_complexity 1 31 0 3 788 522 0 0 0 chr4 26703773 26703831 -128926289 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 788 1648 202 18 12 chr4 26704016 26704346 -128925774 + Lx2B LINE L1 6667 6998 -2 3 788 342 310 38 62 chr4 26704484 26704694 -128925426 - RMER15 LTR ERVL -13 562 358 3 788 202 215 154 0 chr4 26705619 26705684 -128924436 + L3b LINE CR1 140 214 -268 3 788 320 130 0 0 chr4 26706228 26706274 -128923846 + Lx4B LINE L1 6570 6615 -443 3 788 1286 233 100 0 chr4 26706272 26706573 -128923547 + Lx5 LINE L1 6719 7049 -1 3 788 27 29 0 0 chr4 26706657 26706691 -128923429 + AT_rich Low_complexity Low_complexity 1 34 0 3 788 378 178 82 0 chr4 26706776 26706849 -128923271 - RMER4B LTR ERVK -219 366 288 3 788 318 252 105 34 chr4 26707225 26707434 -128922686 - Lx9 LINE L1 -7 7637 7414 3 788 409 382 49 0 chr4 26707600 26707744 -128922376 + RSINE1 SINE B4 3 153 -12 3 788 186 43 0 0 chr4 26707837 26707860 -128922260 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 788 208 147 0 0 chr4 26708112 26708146 -128921974 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 788 477 202 53 35 chr4 26708231 26708344 -128921776 - B1_Mus1 SINE Alu -1 147 33 3 788 1435 230 51 60 chr4 26708349 26708627 -128921493 + Lx6 LINE L1 6277 6553 -907 3 788 2625 62 11 43 chr4 26708627 26708996 -128921124 - IAPEY2_LTR LTR ERVK 0 357 1 3 788 1435 230 51 60 chr4 26708996 26709170 -128920950 + Lx6 LINE L1 6554 6725 -735 3 788 1122 271 6 38 chr4 26709234 26709548 -128920572 - Lx6 LINE L1 -419 7041 6738 3 788 356 0 0 22 chr4 26709676 26709721 -128920399 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 788 495 0 0 0 chr4 26710404 26710459 -128919661 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 788 920 202 138 20 chr4 26710781 26711034 -128919086 - Lx3C LINE L1 -2 6974 6692 3 788 34602 47 1 1 chr4 26711011 26715621 -128914499 + L1Md_T LINE L1 882 5589 -297 3 788 8150 44 6 0 chr4 26715621 26716611 -128913509 + L1Md_T LINE L1 5590 6585 0 3 788 213 108 0 0 chr4 26716714 26716751 -128913369 + (A)n Simple_repeat Simple_repeat 1 37 0 3 788 1771 205 71 13 chr4 26716751 26717201 -128912919 - Lx3C LINE L1 -671 6305 5830 3 788 3877 171 11 15 chr4 26717205 26717940 -128912180 - Lx3C LINE L1 -257 5629 4898 3 788 211 244 0 0 chr4 26717972 26718017 -128912103 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 788 21 36 0 0 chr4 26718892 26718920 -128911200 + AT_rich Low_complexity Low_complexity 1 28 0 3 788 378 365 10 66 chr4 26721236 26721541 -128908579 + B4A SINE B4 5 292 0 3 788 612 258 0 0 chr4 26721575 26721753 -128908367 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 788 20694 50 7 2 chr4 26722571 26725924 -128904196 - L1Md_F3 LINE L1 -16 6568 3198 3 788 11996 45 2 1 chr4 26725923 26727452 -128902668 + L1Md_F3 LINE L1 1624 3154 -2729 3 788 1016 332 59 30 chr4 26727721 26728364 -128901756 + Lx9 LINE L1 6686 7347 -297 3 788 191 36 36 0 chr4 26728374 26728402 -128901718 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 788 561 326 191 17 chr4 26728467 26728823 -128901297 - Lx6 LINE L1 -85 6965 6548 3 788 258 205 141 24 chr4 26728821 26728906 -128901214 - Lx4A LINE L1 -706 6352 6258 3 788 2196 247 19 8 chr4 26728886 26729713 -128900407 - Lx6 LINE L1 -1233 6227 5389 3 788 268 257 52 17 chr4 26729716 26729831 -128900289 + Lx9 LINE L1 7349 7467 -177 3 788 32 43 0 0 chr4 26729983 26730029 -128900091 + AT_rich Low_complexity Low_complexity 1 46 0 3 788 855 278 119 14 chr4 26731742 26732037 -128898083 + Lx8 LINE L1 6911 7236 -237 3 788 3294 161 30 20 chr4 26732494 26733089 -128897031 - MT2B LTR ERVL 0 601 1 3 788 426 53 0 0 chr4 26733598 26733655 -128896465 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 788 268 316 0 12 chr4 26733657 26733737 -128896383 + GA-rich Low_complexity Low_complexity 1 79 0 3 788 632 294 32 61 chr4 26733809 26734055 -128896065 + MTD LTR MaLR 32 270 -149 3 788 222 37 0 0 chr4 26734055 26734082 -128896038 + (T)n Simple_repeat Simple_repeat 1 27 0 3 788 1512 139 4 12 chr4 26734083 26734330 -128895790 - ORR1A3 LTR MaLR -55 271 27 3 788 6147 54 3 3 chr4 26734337 26735119 -128895001 - L1Md_F2 LINE L1 0 6582 5801 3 788 437 310 23 0 chr4 26735134 26735263 -128894857 + MTD LTR MaLR 288 419 0 3 788 21 57 0 0 chr4 26735388 26735423 -128894697 + AT_rich Low_complexity Low_complexity 1 35 0 3 788 268 324 38 94 chr4 26736247 26736407 -128893713 + MamSINE1 SINE tRNA 136 286 -4 3 788 1410 90 53 18 chr4 26737644 26737871 -128892249 - L1_Mus4 LINE L1 -1 6635 6401 3 788 207 0 0 0 chr4 26738023 26738046 -128892074 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 789 25 31 0 0 chr4 26738897 26738929 -128891191 + AT_rich Low_complexity Low_complexity 1 32 0 3 789 671 118 29 9 chr4 26738929 26739063 -128891057 - Lx LINE L1 -8 6646 6497 3 789 2460 76 0 78 chr4 26739193 26739566 -128890554 - Lx LINE L1 -411 6243 5900 3 789 1788 143 0 11 chr4 26739561 26739844 -128890276 - Lx LINE L1 -100 5783 5504 3 789 518 144 45 0 chr4 26739930 26740041 -128890079 - L1_Mus3 LINE L1 -7 6631 6516 3 789 315 238 0 23 chr4 26740157 26740243 -128889877 - Lx7 LINE L1 -1 7695 7612 3 789 2701 277 94 27 chr4 26740368 26741534 -128888586 - Lx7 LINE L1 -231 7465 6222 3 789 477 286 131 38 chr4 26741541 26741791 -128888329 - MT2A LTR ERVL -114 487 85 3 789 21 0 0 0 chr4 26741817 26741838 -128888282 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 3434 241 34 5 chr4 26741838 26742601 -128887519 - MERVL_2A-int LTR ERVL -836 4925 4141 3 789 1734 216 29 0 chr4 26742719 26743066 -128887054 - MERVL_2A-int LTR ERVL -3515 2246 1890 3 789 3013 212 112 33 chr4 26743084 26743925 -128886195 - MERVL_2A-int LTR ERVL -4497 1264 358 3 789 540 155 31 6 chr4 26743936 26744098 -128886022 + (TA)n Simple_repeat Simple_repeat 2 167 0 3 789 364 244 33 11 chr4 26744098 26744189 -128885931 - MT2A LTR ERVL -342 191 99 3 789 349 331 56 42 chr4 26744218 26744360 -128885760 - MT2A LTR ERVL -389 144 1 3 789 245 51 0 25 chr4 26744659 26744699 -128885421 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 789 1082 286 113 8 chr4 26744868 26745221 -128884899 - MTD LTR MaLR -21 398 9 3 789 23 33 0 0 chr4 26746650 26746680 -128883440 + AT_rich Low_complexity Low_complexity 1 30 0 3 789 2029 156 2 68 chr4 26746835 26747247 -128882873 - L1_Mur2 LINE L1 -741 5136 4752 3 789 702 139 0 0 chr4 26747248 26747363 -128882757 - L1_Mur2 LINE L1 -1353 4524 4410 3 789 2887 198 11 11 chr4 26747383 26747931 -128882189 + Lx4B LINE L1 6245 6792 -266 3 789 276 30 0 0 chr4 26748046 26748079 -128882041 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 3 789 1215 285 12 39 chr4 26748492 26748905 -128881215 + Lx9 LINE L1 6880 7281 -363 3 789 985 254 72 4 chr4 26748905 26749182 -128880938 + Lx6 LINE L1 6725 7020 -440 3 789 655 93 28 0 chr4 26749223 26749331 -128880789 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 3 789 32535 88 5 13 chr4 26749333 26752423 -128877697 - L1Md_F2 LINE L1 -3 6579 3480 3 789 345 24 0 0 chr4 26752423 26752465 -128877655 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 3 789 32535 105 12 12 chr4 26752465 26755617 -128874503 - L1Md_F2 LINE L1 -2404 3479 360 3 789 775 329 23 71 chr4 26755634 26755903 -128874217 + Lx6 LINE L1 7059 7310 -150 3 789 1071 108 0 0 chr4 26755903 26756051 -128874069 - B1_Mus1 SINE Alu 0 148 1 3 789 775 329 23 71 chr4 26756051 26756174 -128873946 + Lx6 LINE L1 7311 7432 -28 3 789 586 286 0 0 chr4 26756199 26756346 -128873774 + B1_Mus1 SINE Alu 1 147 -1 3 789 5856 139 30 19 chr4 26756346 26757368 -128872752 + Lx3A LINE L1 5940 6973 -8 3 789 224 224 66 0 chr4 26757386 26757462 -128872658 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 3 789 385 322 70 65 chr4 26757465 26757617 -128872503 + B3A SINE B2 5 161 -34 3 789 270 116 0 0 chr4 26757617 26757660 -128872460 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 789 284 322 70 65 chr4 26757660 26757693 -128872427 + B2_Mm2 SINE B2 162 191 -4 3 789 317 347 50 74 chr4 26758474 26758813 -128871307 + HAL1b LINE L1 1454 1784 -225 3 789 27 49 0 0 chr4 26761490 26761531 -128868589 + AT_rich Low_complexity Low_complexity 1 41 0 3 789 489 311 154 36 chr4 26762376 26762713 -128867407 + MTEb LTR MaLR 1 377 -2 3 789 601 187 101 36 chr4 26762749 26762888 -128867232 + MTD LTR MaLR 10 157 -262 3 789 2688 340 92 45 chr4 26762946 26764121 -128865999 + MTEb-int LTR MaLR 1 1236 -344 3 789 1390 162 11 4 chr4 26764121 26764388 -128865732 - Lx2 LINE L1 0 6997 6729 3 789 2688 340 92 45 chr4 26764388 26764721 -128865399 + MTEb-int LTR MaLR 1237 1579 -1 3 789 582 288 158 14 chr4 26764726 26764941 -128865179 + MTEb LTR MaLR 6 251 -128 3 789 307 349 28 0 chr4 26765487 26765596 -128864524 - PB1 SINE Alu -3 124 13 3 789 721 114 21 0 chr4 26766118 26766258 -128863862 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 3 789 1138 58 0 0 chr4 26766322 26766461 -128863659 + B1_Mus1 SINE Alu 1 139 -9 3 789 258 32 0 0 chr4 26766461 26766492 -128863628 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 789 4635 130 190 7 chr4 26766548 26767379 -128862741 + RLTR13C1 LTR ERVK 1 983 0 3 789 210 37 0 0 chr4 26768038 26768065 -128862055 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 789 224 100 25 0 chr4 26768981 26769021 -128861099 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 3 789 24 53 0 0 chr4 26770404 26770442 -128859678 + AT_rich Low_complexity Low_complexity 1 38 0 3 789 22 35 0 0 chr4 26771417 26771446 -128858674 + AT_rich Low_complexity Low_complexity 1 29 0 3 789 861 281 46 8 chr4 26771764 26772026 -128858094 - Lx6 LINE L1 -1100 6360 6089 3 789 708 269 50 0 chr4 26772013 26772243 -128857877 + Lx6 LINE L1 6309 6575 -885 3 789 2191 268 55 15 chr4 26772230 26772813 -128857307 + Lx6 LINE L1 6696 7301 -159 3 789 1935 202 83 16 chr4 26772855 26772975 -128857145 - RMER1B Other Other 0 1066 947 3 789 198 71 0 0 chr4 26772975 26773003 -128857117 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 789 1935 202 83 16 chr4 26773003 26773329 -128856791 - RMER1B Other Other -120 946 591 3 789 440 264 62 26 chr4 26773346 26773459 -128856661 - RMER1B Other Other -539 527 411 3 789 317 315 0 8 chr4 26773541 26773672 -128856448 + Lx6 LINE L1 7329 7458 -2 3 789 586 169 14 0 chr4 26774054 26774196 -128855924 + GA-rich Low_complexity Low_complexity 1 144 0 3 789 28 0 0 0 chr4 26774261 26774289 -128855831 + AT_rich Low_complexity Low_complexity 1 28 0 3 789 229 254 0 31 chr4 26774583 26774648 -128855472 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 4 789 594 345 5 0 chr4 26774815 26775024 -128855096 - B3 SINE B2 -5 211 2 4 789 30 0 0 0 chr4 26775025 26775055 -128855065 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 289 300 0 0 chr4 26775624 26775722 -128854398 + GA-rich Low_complexity Low_complexity 1 98 0 4 789 947 320 33 15 chr4 26776639 26777029 -128853091 + Lx9 LINE L1 6542 6938 -706 4 789 271 300 22 22 chr4 26778416 26778508 -128851612 - Tigger5 DNA MER2_type -20 2386 2295 4 789 277 321 40 86 chr4 26778523 26778697 -128851423 - Tigger5 DNA MER2_type -2205 201 36 4 789 303 140 0 0 chr4 26779140 26779190 -128850930 + (CAT)n Simple_repeat Simple_repeat 2 51 0 4 789 6664 102 16 8 chr4 26779492 26779518 -128850602 - L1_Mus2 LINE L1 -1 6565 6546 4 789 4508 93 28 68 chr4 26779518 26780300 -128849820 + RMER17A LTR ERVK 1 751 0 4 789 6664 102 16 8 chr4 26780300 26781243 -128848877 - L1_Mus2 LINE L1 -21 6545 5588 4 789 841 112 3 0 chr4 26781244 26781373 -128848747 + L1_Mus2 LINE L1 5425 5572 -725 4 789 21 71 0 0 chr4 26782269 26782311 -128847809 + AT_rich Low_complexity Low_complexity 1 42 0 4 789 23 33 0 0 chr4 26782688 26782718 -128847402 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 3476 159 14 5 chr4 26783217 26783837 -128846283 - L1_Mm LINE L1 -513 5370 4745 4 789 6738 95 26 2 chr4 26783830 26784788 -128845332 + L1_Mus3 LINE L1 5657 6637 -1 4 789 490 333 71 26 chr4 26785983 26786448 -128843672 + Lx8 LINE L1 5126 5611 -269 4 789 323 186 151 0 chr4 26786448 26786534 -128843586 + ORR1C2 LTR MaLR 1 99 -275 4 789 562 207 0 0 chr4 26786536 26786647 -128843473 - ORR1C2 LTR MaLR 0 384 274 4 789 560 340 24 13 chr4 26786588 26786864 -128843256 + ORR1C2 LTR MaLR 99 384 0 4 789 1298 340 74 45 chr4 26786903 26787378 -128842742 + Lx8 LINE L1 5649 6176 -1297 4 789 608 70 12 0 chr4 26787378 26787464 -128842656 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 789 1298 340 74 45 chr4 26787464 26787956 -128842164 + Lx8 LINE L1 6177 6644 -829 4 789 395 356 66 46 chr4 26787970 26788400 -128841720 + Lx8 LINE L1 6744 7211 -262 4 789 207 167 36 18 chr4 26788666 26788721 -128841399 + A-rich Low_complexity Low_complexity 5 60 0 4 789 454 360 13 0 chr4 26789613 26789763 -128840357 + RSINE1 SINE B4 1 152 -13 4 789 1142 118 6 0 chr4 26789854 26790024 -128840096 - B2_Mm1t SINE B2 -22 171 1 4 789 3179 42 5 3 chr4 26790031 26790416 -128839704 + L1Md_F2 LINE L1 6000 6385 -197 4 789 1067 112 12 0 chr4 26790416 26790585 -128839535 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 4 789 533 267 235 52 chr4 26791227 26791565 -128838555 + MTD LTR MaLR 1 419 0 4 789 23 33 0 0 chr4 26793077 26793107 -128837013 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 2653 137 14 62 chr4 26793131 26793693 -128836427 - L1_Mur1 LINE L1 -2660 3226 2692 4 789 866 124 31 12 chr4 26793684 26793847 -128836273 - L1_Mur1 LINE L1 -1188 4698 4533 4 789 614 109 10 0 chr4 26793849 26793950 -128836170 - L1_Mur1 LINE L1 -1968 3918 3817 4 789 4033 274 21 47 chr4 26793974 26794121 -128835999 + Lx7 LINE L1 6061 6212 -1484 4 789 1133 82 0 0 chr4 26794121 26794267 -128835853 + B1_Mus1 SINE Alu 2 147 -1 4 789 4033 274 21 47 chr4 26794267 26795388 -128834732 + Lx7 LINE L1 6213 7297 -399 4 789 204 158 0 0 chr4 26795388 26795426 -128834694 + (CCA)n Simple_repeat Simple_repeat 1 38 0 4 789 195 42 0 0 chr4 26795503 26795527 -128834593 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 789 512 248 18 173 chr4 26795540 26795818 -128834302 + Lx7 LINE L1 7378 7612 -84 4 789 201 74 0 0 chr4 26796135 26796162 -128833958 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 789 21 36 0 0 chr4 26797353 26797381 -128832739 + AT_rich Low_complexity Low_complexity 1 28 0 4 789 480 274 76 39 chr4 26798122 26798523 -128831597 + L1MB5 LINE L1 5754 6167 -7 4 789 434 155 12 0 chr4 26798643 26798727 -128831393 - Lx3C LINE L1 -9 6967 6883 4 789 460 250 0 8 chr4 26798729 26798854 -128831266 + Lx2B LINE L1 6876 6999 -1 4 789 1733 274 51 14 chr4 26798843 26799413 -128830707 + Lx6 LINE L1 5777 6367 -1093 4 789 2241 259 55 15 chr4 26799430 26800048 -128830072 + Lx6 LINE L1 6815 7457 -3 4 789 23 33 0 0 chr4 26801172 26801202 -128828918 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 197 77 51 0 chr4 26801367 26801406 -128828714 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 4 789 3281 106 8 2 chr4 26801420 26801892 -128828228 + MT2C_Mm LTR ERVL 1 475 0 4 789 234 205 79 0 chr4 26803037 26803110 -128827010 + LTR81B LTR ERV1? 190 271 -1079 4 789 1785 198 118 8 chr4 26803493 26803865 -128826255 + MTC LTR MaLR 1 413 -8 4 789 316 325 14 115 chr4 26804110 26804249 -128825871 - B4 SINE B4 0 292 168 4 789 3605 137 67 8 chr4 26804319 26804936 -128825184 - Lx2 LINE L1 -1 6996 6344 4 789 1681 208 12 70 chr4 26804936 26805350 -128824770 + Lx LINE L1 6265 6654 0 4 789 270 0 0 0 chr4 26805558 26805588 -128824532 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 789 2260 53 0 0 chr4 26806919 26807202 -128822918 + L1Md_F2 LINE L1 6288 6570 -12 4 789 414 0 0 0 chr4 26808600 26808646 -128821474 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 789 219 114 0 0 chr4 26808701 26808736 -128821384 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 789 3883 96 32 9 chr4 26809259 26809825 -128820295 + L1_Mus3 LINE L1 6053 6631 -7 4 789 198 0 0 0 chr4 26810472 26810494 -128819626 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 789 690 345 5 30 chr4 26811020 26811223 -128818897 + ID_B1 SINE B4 25 222 -2 4 789 28 48 0 0 chr4 26811590 26811632 -128818488 + AT_rich Low_complexity Low_complexity 1 42 0 4 789 979 336 113 36 chr4 26812163 26813645 -128816475 + L1_Rod LINE L1 1203 2799 -3048 4 789 320 295 49 98 chr4 26813669 26814208 -128815912 + L1_Rod LINE L1 4885 5411 -469 4 789 598 49 59 0 chr4 26814305 26814407 -128815713 + (AGGGGG)n Simple_repeat Simple_repeat 4 111 0 4 789 1278 335 75 23 chr4 26814424 26815161 -128814959 + Lx8 LINE L1 6282 7056 -417 4 789 1423 205 104 41 chr4 26816756 26817101 -128813019 - ORR1B2 LTR MaLR 0 367 1 4 789 273 290 29 0 chr4 26818147 26818216 -128811904 + Lx8 LINE L1 7234 7304 -169 4 789 397 132 13 0 chr4 26818414 26818490 -128811630 + L1_Mus2 LINE L1 6490 6566 0 4 789 1188 29 0 0 chr4 26818499 26818637 -128811483 + B1_Mus2 SINE Alu 1 138 -9 4 789 181 0 69 0 chr4 26818637 26818666 -128811454 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 789 1498 203 34 13 chr4 26822018 26822527 -128807593 + RLTR12A LTR ERVK 1 548 -20 4 789 3501 260 75 38 chr4 26822527 26823663 -128806457 + Lx5 LINE L1 5864 7041 -9 4 789 372 253 124 60 chr4 26823914 26824099 -128806021 - B3A SINE B2 0 198 2 4 789 317 272 101 0 chr4 26825646 26825804 -128804316 - L1MA6 LINE L1 -7 6293 6120 4 789 1913 68 0 0 chr4 26826304 26826552 -128803568 - L1Md_F2 LINE L1 -12 6570 6323 4 789 1121 62 0 0 chr4 26826553 26826698 -128803422 + L1Md_F2 LINE L1 6166 6310 -272 4 789 25 0 0 0 chr4 26827239 26827264 -128802856 + AT_rich Low_complexity Low_complexity 1 25 0 4 789 30 0 0 0 chr4 26827289 26827319 -128802801 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 256 24 0 47 chr4 26827700 26827743 -128802377 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 789 1794 318 92 14 chr4 26827950 26828859 -128801261 + Lx9 LINE L1 6657 7636 -8 4 789 8335 36 1 0 chr4 26829149 26830144 -128799976 + L1Md_A LINE L1 5587 6582 0 4 789 31 44 0 0 chr4 26830305 26830350 -128799770 + AT_rich Low_complexity Low_complexity 1 45 0 4 789 1376 264 82 11 chr4 26831082 26831434 -128798686 + MTD LTR MaLR 12 388 -31 4 789 1682 231 45 0 chr4 26832230 26832607 -128797513 - ORR1B1 LTR MaLR 0 394 1 4 789 3131 206 119 41 chr4 26832607 26833525 -128796595 - ORR1B1-int LTR MaLR 0 1509 521 4 789 7743 189 36 17 chr4 26833533 26836323 -128793797 - Lx3C LINE L1 -4 6972 4133 4 789 9673 59 8 0 chr4 26836311 26837540 -128792580 + L1Md_F2 LINE L1 4348 5586 -297 4 789 8031 47 1 1 chr4 26837540 26838524 -128791596 + L1Md_F2 LINE L1 5587 6570 -12 4 789 319 115 0 0 chr4 26838528 26838580 -128791540 - Lx3C LINE L1 -1733 4144 4093 4 789 1143 240 122 52 chr4 26838578 26839062 -128791058 - L1_Mur1 LINE L1 -5747 1235 718 4 789 5217 175 44 8 chr4 26839379 26840602 -128789518 - Lx3B LINE L1 0 6973 5596 4 789 2820 108 2 2 chr4 26840602 26841002 -128789118 - MTB LTR MaLR 0 400 1 4 789 2001 132 24 6 chr4 26841002 26841051 -128789069 - Lx3B LINE L1 -291 5595 5544 4 789 4362 129 15 228 chr4 26841050 26842334 -128787786 + Lx3B LINE L1 4526 5535 -351 4 789 2187 229 17 2 chr4 26842334 26842816 -128787304 - ORR1B1-int LTR MaLR -1020 489 1 4 789 773 205 6 51 chr4 26842820 26842995 -128787125 - ORR1B1 LTR MaLR -8 386 220 4 789 661 330 108 32 chr4 26844299 26844615 -128785505 - ORR1D2 LTR MaLR 0 370 31 4 789 1798 296 48 24 chr4 26844625 26845506 -128784614 - ORR1D2-int LTR MaLR 0 1370 50 4 789 234 183 48 48 chr4 26845620 26845683 -128784437 - ORR1D2 LTR MaLR -19 351 289 4 789 269 434 6 81 chr4 26845721 26845894 -128784226 - ORR1D2 LTR MaLR -178 192 33 4 789 411 387 30 47 chr4 26846064 26846362 -128783758 + MTE2b LTR MaLR 2 294 -85 4 789 2418 58 0 6 chr4 26846728 26847041 -128783079 + L1Md_F2 LINE L1 6271 6581 -1 4 789 259 379 58 43 chr4 26847267 26847405 -128782715 + RSINE1 SINE B4 5 144 -21 4 789 21 0 0 0 chr4 26847604 26847625 -128782495 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 456 312 16 69 chr4 26847625 26847814 -128782306 - B3 SINE B2 -29 187 9 4 789 375 330 0 0 chr4 26850042 26850130 -128779990 + B4A SINE B4 27 114 -178 4 789 396 0 0 0 chr4 26850405 26850449 -128779671 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 789 21 0 0 0 chr4 26850474 26850495 -128779625 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 330 45 0 0 chr4 26850748 26850792 -128779328 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 789 25 75 0 0 chr4 26851056 26851109 -128779011 + AT_rich Low_complexity Low_complexity 1 53 0 4 789 23 0 0 0 chr4 26853106 26853129 -128776991 + AT_rich Low_complexity Low_complexity 1 23 0 4 789 22 0 0 0 chr4 26855154 26855176 -128774944 + AT_rich Low_complexity Low_complexity 1 22 0 4 789 339 25 0 0 chr4 26856267 26856307 -128773813 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 789 198 143 0 0 chr4 26856593 26856628 -128773492 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 4 789 240 35 0 0 chr4 26856721 26856750 -128773370 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 789 372 22 0 0 chr4 26856750 26856794 -128773326 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 789 225 323 83 31 chr4 26857145 26857241 -128772879 - RLTR21 LTR ERVK -1444 128 28 4 789 21 82 0 0 chr4 26858929 26858978 -128771142 + AT_rich Low_complexity Low_complexity 1 49 0 4 789 21 57 0 0 chr4 26859600 26859635 -128770485 + AT_rich Low_complexity Low_complexity 1 35 0 4 789 273 219 0 0 chr4 26859871 26859944 -128770176 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 789 852 67 0 0 chr4 26860518 26860638 -128769482 + (TCC)n Simple_repeat Simple_repeat 1 120 0 4 789 332 133 0 16 chr4 26862339 26862400 -128767720 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 789 21 82 0 0 chr4 26862839 26862888 -128767232 + AT_rich Low_complexity Low_complexity 1 49 0 5 789 251 136 17 0 chr4 26863107 26863166 -128766954 + A-rich Low_complexity Low_complexity 2 61 0 5 789 259 413 0 0 chr4 26863271 26863363 -128766757 + RSINE1 SINE B4 74 165 0 5 789 294 167 0 0 chr4 26863884 26863968 -128766152 + A-rich Low_complexity Low_complexity 1 84 0 5 789 262 313 30 0 chr4 26864077 26864144 -128765976 + RSINE1 SINE B4 71 139 -26 5 789 315 0 0 0 chr4 26864145 26864180 -128765940 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 789 25 31 0 0 chr4 26864180 26864212 -128765908 + AT_rich Low_complexity Low_complexity 1 32 0 5 789 6126 185 49 23 chr4 26865317 26866613 -128763507 - Lx3C LINE L1 -5 6971 5674 5 789 530 113 0 10 chr4 26867355 26867453 -128762667 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 789 414 0 0 0 chr4 26867455 26867501 -128762619 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 789 946 311 145 62 chr4 26867567 26868277 -128761843 - Lx8 LINE L1 -207 7266 6498 5 789 3381 186 55 22 chr4 26869261 26869412 -128760708 - RLTR19B LTR ERVK -6 709 552 5 789 216 0 0 0 chr4 26869412 26869436 -128760684 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 98 3381 186 55 22 chr4 26869436 26869970 -128760150 - RLTR19B LTR ERVK -164 551 1 5 790 2200 252 71 7 chr4 26869970 26870642 -128759478 - ORR1B1-int LTR MaLR -349 1160 401 5 790 198 71 0 0 chr4 26870642 26870670 -128759450 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 5 790 1738 277 44 13 chr4 26870670 26871017 -128759103 - ORR1B1-int LTR MaLR -1109 400 52 5 790 466 55 32 21 chr4 26871067 26871160 -128758960 + (CAAA)n Simple_repeat Simple_repeat 2 95 0 5 790 1483 250 100 52 chr4 26871160 26871762 -128758358 - RMER6C LTR ERVK -59 631 1 5 790 2147 89 118 14 chr4 26871829 26872194 -128757926 + RLTR9D LTR ERVK 1 403 0 5 790 48 32 0 0 chr4 26872548 26872610 -128757510 + AT_rich Low_complexity Low_complexity 1 62 0 5 790 493 296 0 43 chr4 26872623 26872761 -128757359 + U1 snRNA snRNA 11 142 -23 5 790 3321 168 0 3 chr4 26873422 26874000 -128756120 + L1_Mus3 LINE L1 4700 5275 -608 5 790 7386 113 2 5 chr4 26873999 26875096 -128755024 + L1_Mus3 LINE L1 5545 6638 0 5 790 216 97 0 0 chr4 26875168 26875199 -128754921 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 790 491 224 0 13 chr4 26875833 26875987 -128754133 + (TATG)n Simple_repeat Simple_repeat 4 155 0 5 790 739 335 30 26 chr4 26876046 26876310 -128753810 - B4A SINE B4 -20 272 8 5 790 321 263 188 7 chr4 26876396 26876534 -128753586 + MTEb LTR MaLR 216 378 -1 5 790 21 0 0 0 chr4 26876659 26876680 -128753440 + AT_rich Low_complexity Low_complexity 1 21 0 5 790 533 76 0 12 chr4 26877399 26877479 -128752641 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 790 270 243 225 40 chr4 26877708 26877935 -128752185 - HAL1 LINE L1 -441 2066 1798 5 790 324 132 319 18 chr4 26878465 26878578 -128751542 - B2_Mm2 SINE B2 -2 193 47 5 790 1119 115 29 6 chr4 26878628 26878803 -128751317 - B2_Mm1t SINE B2 -14 179 1 5 790 7381 184 16 16 chr4 26879755 26881262 -128748858 - Lx2B LINE L1 0 7000 5496 5 790 4372 78 0 5 chr4 26881274 26881854 -128748266 - L1Md_F2 LINE L1 -12 6570 5994 5 790 6779 36 0 0 chr4 26882029 26882832 -128747288 - L1Md_T LINE L1 0 6582 5780 5 790 567 29 0 0 chr4 26882912 26882981 -128747139 + (CAAAC)n Simple_repeat Simple_repeat 1 69 0 5 790 21 36 0 0 chr4 26883415 26883443 -128746677 + AT_rich Low_complexity Low_complexity 1 28 0 5 790 22 88 0 0 chr4 26883475 26883532 -128746588 + AT_rich Low_complexity Low_complexity 1 57 0 5 790 2931 260 56 6 chr4 26883691 26884553 -128745567 + Lx3C LINE L1 6066 6970 -6 5 790 22 56 0 0 chr4 26884553 26884589 -128745531 + AT_rich Low_complexity Low_complexity 1 36 0 5 790 264 30 0 0 chr4 26884950 26884983 -128745137 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 790 534 197 0 0 chr4 26884999 26885136 -128744984 + GA-rich Low_complexity Low_complexity 2 138 0 5 790 24 0 0 0 chr4 26885147 26885171 -128744949 + AT_rich Low_complexity Low_complexity 1 24 0 5 790 842 122 14 7 chr4 26885416 26885564 -128744556 - L1_Mus3 LINE L1 -7 6631 6483 5 790 1392 276 45 12 chr4 26885674 26886095 -128744025 - Lx6 LINE L1 -40 7420 6986 5 790 431 282 39 6 chr4 26886084 26886266 -128743854 - L1_Mur3 LINE L1 -6673 1039 852 5 790 1159 82 0 0 chr4 26886913 26887060 -128743060 - B1_Mus1 SINE Alu 0 148 2 5 790 243 0 0 0 chr4 26887359 26887386 -128742734 + (T)n Simple_repeat Simple_repeat 1 27 0 5 790 324 375 50 59 chr4 26887419 26887739 -128742381 + MLT2C1 LTR ERVL 81 397 0 5 790 375 343 75 33 chr4 26887863 26888104 -128742016 + MIR SINE MIR 11 261 -1 5 790 27 62 0 0 chr4 26888937 26888985 -128741135 + AT_rich Low_complexity Low_complexity 1 48 0 5 790 323 224 90 20 chr4 26889252 26889352 -128740768 + L1MCa LINE L1 1853 1959 -4549 5 790 321 89 0 0 chr4 26889358 26889403 -128740717 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 790 369 175 162 0 chr4 26889403 26889483 -128740637 - Lx7 LINE L1 -372 7324 7232 5 790 405 263 17 9 chr4 26889484 26889599 -128740521 + Lx7 LINE L1 6148 6263 -1433 5 790 299 237 13 26 chr4 26889842 26889920 -128740200 + T-rich Low_complexity Low_complexity 2 78 0 5 790 360 336 67 0 chr4 26890228 26890347 -128739773 + RSINE1 SINE B4 4 130 -35 5 790 23 0 0 0 chr4 26890848 26890871 -128739249 + AT_rich Low_complexity Low_complexity 1 23 0 5 790 462 321 54 27 chr4 26891276 26891500 -128738620 + Lx8 LINE L1 6383 6612 -861 5 790 2191 187 180 42 chr4 26891580 26892308 -128737812 - RMER6C LTR ERVK -13 707 4 5 790 3259 82 9 2 chr4 26892394 26892837 -128737283 - L1_Mus1 LINE L1 0 6567 6122 5 790 982 329 78 22 chr4 26892897 26893395 -128736725 + Lx8 LINE L1 6827 7352 -121 5 790 25 31 0 0 chr4 26893761 26893793 -128736327 + AT_rich Low_complexity Low_complexity 1 32 0 5 790 489 301 108 59 chr4 26894162 26894384 -128735736 + MTD LTR MaLR 187 419 0 5 790 1803 257 106 13 chr4 26894621 26895252 -128734868 - Lx9 LINE L1 -9 7635 6946 5 790 10391 96 12 2 chr4 26895281 26897525 -128732595 + L1_Mus1 LINE L1 4322 6567 0 5 790 396 0 0 0 chr4 26897602 26897646 -128732474 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 790 450 317 14 14 chr4 26898276 26898423 -128731697 - B1_Mur2 SINE Alu -1 148 2 5 790 1238 96 45 0 chr4 26898882 26899059 -128731061 + B2_Mm2 SINE B2 2 186 -9 5 790 240 343 69 35 chr4 26899186 26899331 -128730789 + MER58B DNA MER1_type 176 325 -16 5 790 950 301 69 29 chr4 26899808 26900154 -128729966 + MTE2a LTR MaLR 20 379 0 5 790 366 304 183 0 chr4 26900667 26900847 -128729273 + Lx7 LINE L1 7119 7331 -365 5 790 216 271 53 15 chr4 26900847 26900978 -128729142 + T-rich Low_complexity Low_complexity 3 138 0 5 790 955 123 7 20 chr4 26901548 26901697 -128728423 + B1_Mus2 SINE Alu 1 147 0 5 790 638 109 8 23 chr4 26901829 26901960 -128728160 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 790 248 140 0 23 chr4 26902056 26902100 -128728020 + Lx5 LINE L1 6369 6411 -639 5 790 1325 216 37 31 chr4 26902227 26902552 -128727568 + Lx4B LINE L1 6684 7010 -48 5 790 2715 187 9 7 chr4 26902665 26903205 -128726915 + L1Md_F LINE L1 104 1079 -5440 5 790 1703 45 5 9 chr4 26903205 26903429 -128726691 + L1Md_F3 LINE L1 6360 6582 -2 5 790 261 0 0 0 chr4 26903437 26903466 -128726654 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 5 790 28180 125 12 12 chr4 26903466 26908919 -128721201 + L1_Mus1 LINE L1 1177 6567 0 5 790 180 111 0 0 chr4 26909059 26909086 -128721034 + (A)n Simple_repeat Simple_repeat 1 27 0 5 790 442 246 66 44 chr4 26909874 26910010 -128720110 - B1_Mus2 SINE Alu -2 145 7 5 790 2037 105 9 58 chr4 26910563 26910908 -128719212 + L1_Mus2 LINE L1 6234 6561 -5 5 790 1432 80 5 0 chr4 26911205 26911404 -128718716 + L1_Mus2 LINE L1 6367 6566 0 5 790 256 318 50 75 chr4 26912160 26912439 -128717681 - RMER12 LTR ERVK -290 1032 761 5 790 481 330 74 8 chr4 26913590 26913785 -128716335 + B3A SINE B2 1 210 -6 5 790 219 69 0 0 chr4 26913940 26913969 -128716151 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 790 835 259 29 33 chr4 26914021 26914265 -128715855 - ORR1D1 LTR MaLR -129 245 3 5 790 392 298 44 62 chr4 26914381 26914656 -128715464 + L1MD LINE L1 2900 3180 -2966 5 790 4492 139 68 9 chr4 26914713 26915491 -128714629 - Lx4A LINE L1 -561 6497 5674 5 790 2798 176 38 7 chr4 26915491 26916042 -128714078 + Lx4A LINE L1 6488 7055 -3 5 790 482 279 54 0 chr4 26916078 26916207 -128713913 + B3 SINE B2 80 215 -1 5 790 5459 157 19 0 chr4 26916264 26916580 -128713540 - L1_Mur2 LINE L1 -1313 4564 4247 5 790 207 0 0 0 chr4 26916580 26916603 -128713517 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 790 5459 158 19 0 chr4 26916603 26917284 -128712836 - L1_Mur2 LINE L1 -1631 4246 3562 5 790 236 217 12 35 chr4 26917378 26917464 -128712656 + Lx9 LINE L1 7478 7561 -83 5 790 602 316 5 64 chr4 26917749 26917890 -128712230 + B4A SINE B4 81 221 -71 5 790 481 128 0 47 chr4 26917890 26918032 -128712088 + L1Md_F3 LINE L1 6469 6584 0 5 790 602 316 5 64 chr4 26918032 26918092 -128712028 + B4A SINE B4 222 270 -22 5 790 290 212 45 45 chr4 26918421 26918510 -128711610 - L1MA9 LINE L1 -396 5916 5828 5 790 38 39 0 0 chr4 26918698 26918750 -128711370 + AT_rich Low_complexity Low_complexity 1 52 0 5 790 3507 153 2 22 chr4 26918754 26919341 -128710779 - Lx2B LINE L1 -6 6994 6420 5 790 413 129 0 0 chr4 26919342 26919404 -128710716 + Lx2B LINE L1 6344 6405 -595 5 790 867 362 62 36 chr4 26919407 26920381 -128709739 - Lx8 LINE L1 0 7473 6475 5 790 1125 237 35 4 chr4 26920396 26920654 -128709466 + ORR1D1 LTR MaLR 109 374 0 5 790 2737 292 62 67 chr4 26920658 26921410 -128708710 + ORR1D1-int LTR MaLR 5 782 -588 5 790 1051 82 0 20 chr4 26921410 26921560 -128708560 + B1_Mus1 SINE Alu 1 147 -1 5 790 2737 292 62 67 chr4 26921560 26922180 -128707940 + ORR1D1-int LTR MaLR 783 1370 0 5 790 297 297 100 17 chr4 26922180 26922300 -128707820 + ORR1D1 LTR MaLR 1 130 -264 5 790 339 144 63 8 chr4 26922359 26922485 -128707635 + (TA)n Simple_repeat Simple_repeat 2 134 0 6 790 228 163 0 0 chr4 26922476 26922519 -128707601 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 790 475 346 22 6 chr4 26922790 26922973 -128707147 - B3 SINE B2 -6 210 25 6 790 316 289 71 33 chr4 26923470 26923681 -128706439 + L1_Rod LINE L1 4999 5217 -630 6 790 387 0 0 0 chr4 26924253 26924296 -128705824 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 790 585 0 0 0 chr4 26924298 26924363 -128705757 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 790 396 0 0 0 chr4 26924431 26924475 -128705645 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 790 7697 253 132 25 chr4 26924511 26925460 -128704660 - Lx6 LINE L1 -827 6633 5560 6 790 3005 68 15 2 chr4 26925460 26925856 -128704264 - L1_Mus1 LINE L1 0 6567 6167 6 790 7697 226 44 21 chr4 26925856 26927712 -128702408 - Lx6 LINE L1 -321 5559 3654 6 790 1349 247 14 6 chr4 26927695 26928041 -128702079 - Lx6 LINE L1 -3146 2734 2386 6 790 1426 198 48 10 chr4 26928038 26928483 -128701637 - Lx6 LINE L1 -4230 1650 1185 6 790 180 0 0 0 chr4 26928486 26928506 -128701614 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 790 2088 259 73 52 chr4 26928583 26929284 -128700836 - Lx2B LINE L1 -8 7050 6250 6 790 995 271 23 15 chr4 26929292 26929551 -128700569 + Lx5 LINE L1 6126 6386 -664 6 790 6152 139 16 0 chr4 26929553 26930601 -128699519 + L1VL2 LINE L1 66 1130 -2485 6 790 3504 106 12 10 chr4 26930607 26931114 -128699006 - Lx3_Mus LINE L1 -152 6857 6350 6 790 3103 66 2 0 chr4 26931114 26931507 -128698613 - MTA_Mm LTR MaLR 0 396 3 6 790 5214 106 33 29 chr4 26931509 26932518 -128697602 - MTA_Mm-int LTR MaLR 0 1098 1 6 790 3246 51 2 0 chr4 26932518 26932913 -128697207 - MTA_Mm LTR MaLR 0 396 1 6 790 1841 132 19 6 chr4 26932913 26933226 -128696894 - Lx3_Mus LINE L1 -655 6354 6038 6 790 607 123 24 8 chr4 26933226 26933349 -128696771 + Lx3_Mus LINE L1 6884 7008 -1 6 790 6569 117 100 4 chr4 26933353 26933901 -128696219 + L1VL2 LINE L1 1125 1785 -1830 6 790 443 18 18 0 chr4 26933901 26933957 -128696163 + (TAAAA)n Simple_repeat Simple_repeat 2 58 0 6 790 6569 117 100 4 chr4 26933957 26934580 -128695540 + L1VL2 LINE L1 1786 2407 -1208 6 790 35493 51 24 4 chr4 26934580 26939806 -128690314 + L1Md_T LINE L1 277 5585 -298 6 790 7996 55 0 0 chr4 26939807 26940801 -128689319 + L1Md_T LINE L1 5587 6580 -2 6 790 1775 110 39 0 chr4 26940801 26941083 -128689037 + L1VL2 LINE L1 2399 2691 -924 6 790 378 301 16 8 chr4 26941073 26941197 -128688923 + L1VL4 LINE L1 196 320 -5982 6 790 328 235 50 20 chr4 26941215 26941315 -128688805 - L1_Mur3 LINE L1 -7390 322 220 6 790 1127 284 5 57 chr4 26941301 26941670 -128688450 - L1_Mur3 LINE L1 -7346 366 17 6 790 33 25 0 0 chr4 26941789 26941829 -128688291 + AT_rich Low_complexity Low_complexity 1 40 0 6 790 240 0 75 0 chr4 26942211 26942251 -128687869 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 6 790 1068 96 7 0 chr4 26942251 26942397 -128687723 - B1_Mus2 SINE Alu 0 147 1 6 790 386 370 24 70 chr4 26942397 26942725 -128687395 + ORR1D1 LTR MaLR 59 371 -3 6 790 410 0 0 20 chr4 26942812 26942863 -128687257 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 790 21 0 0 0 chr4 26944021 26944042 -128686078 + AT_rich Low_complexity Low_complexity 1 21 0 6 790 379 224 120 8 chr4 26945082 26945199 -128684921 + Lx3C LINE L1 6816 6945 -31 6 790 483 323 36 50 chr4 26945237 26945377 -128684743 + RSINE1 SINE B4 4 141 -24 6 790 417 81 0 0 chr4 26945381 26945443 -128684677 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 790 6058 74 0 5 chr4 26946698 26946758 -128683362 - L1_Mm LINE L1 -1424 4459 4401 6 790 6813 82 3 2 chr4 26946758 26947650 -128682470 - RLTR13B1 LTR ERVK 0 893 1 6 790 6058 74 0 5 chr4 26947650 26948409 -128681711 - L1_Mm LINE L1 -1483 4400 3644 6 790 5961 79 1 0 chr4 26948408 26949193 -128680927 + L1Md_F2 LINE L1 4800 5585 -298 6 790 7315 76 7 12 chr4 26949194 26950191 -128679929 + L1Md_F2 LINE L1 5587 6578 -4 6 790 23 0 0 0 chr4 26950689 26950712 -128679408 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 307 188 11 23 chr4 26950738 26950825 -128679295 + T-rich Low_complexity Low_complexity 6 91 0 6 790 671 242 7 0 chr4 26950826 26950975 -128679145 - B1_Mur4 SINE Alu 0 150 1 6 790 379 298 6 92 chr4 26950975 26951010 -128679110 - ID SINE ID -149 75 56 6 790 228 263 6 174 chr4 26950913 26951074 -128679046 + YREP_Mm Unknown Unknown 256 389 -1423 6 790 301 296 106 12 chr4 26952228 26952474 -128677646 - L1MA9 LINE L1 -377 5935 5667 6 790 227 217 0 0 chr4 26953831 26953877 -128676243 + A-rich Low_complexity Low_complexity 1 46 0 6 790 30 27 0 0 chr4 26954510 26954547 -128675573 + AT_rich Low_complexity Low_complexity 1 37 0 6 790 580 323 68 0 chr4 26955803 26955820 -128674300 - B3 SINE B2 -6 210 190 6 790 237 65 0 0 chr4 26955820 26955851 -128674269 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 790 580 323 68 0 chr4 26955851 26956025 -128674095 - B3 SINE B2 -27 189 7 6 790 979 131 18 160 chr4 26956507 26956788 -128673332 - Lx2A LINE L1 -12 6996 6756 6 790 489 376 58 82 chr4 26956850 26957192 -128672928 - MTE-int LTR MaLR -608 972 639 6 790 27182 139 18 9 chr4 26957268 26963364 -128666756 - L1_Mus2 LINE L1 -2 6564 409 6 790 1593 256 61 79 chr4 26963364 26964064 -128666056 + Lx9 LINE L1 6934 7621 -23 6 790 28 0 0 0 chr4 26964066 26964094 -128666026 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 2221 268 13 13 chr4 26964100 26964648 -128665472 - Lx5 LINE L1 0 7050 6503 6 790 776 337 42 81 chr4 26966448 26966858 -128663262 + MTD LTR MaLR 18 411 -8 6 790 465 288 69 58 chr4 26967149 26967322 -128662798 + RLTR28B LTR ERVL 1 175 -306 6 790 271 96 39 0 chr4 26967389 26967441 -128662679 + (CAA)n Simple_repeat Simple_repeat 1 54 0 6 790 390 129 0 0 chr4 26968141 26968203 -128661917 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 790 432 351 38 0 chr4 26968207 26968338 -128661782 - B1_Mur4 SINE Alu -14 136 1 6 790 672 309 42 67 chr4 26968522 26968928 -128661192 + Lx9 LINE L1 6898 7293 -351 6 790 25 65 0 0 chr4 26968928 26968974 -128661146 + AT_rich Low_complexity Low_complexity 1 46 0 6 790 243 0 0 0 chr4 26968974 26969001 -128661119 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 790 1456 327 36 18 chr4 26969018 26969688 -128660432 + Lx9 LINE L1 6369 7050 -594 6 790 555 43 0 0 chr4 26970020 26970090 -128660030 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 790 279 0 0 0 chr4 26970203 26970234 -128659886 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 790 465 66 0 0 chr4 26970234 26970294 -128659826 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 790 22 0 0 0 chr4 26970367 26970389 -128659731 + AT_rich Low_complexity Low_complexity 1 22 0 6 790 530 280 70 0 chr4 26970577 26970791 -128659329 + L1MD1 LINE L1 5759 5987 -255 6 790 31 58 0 0 chr4 26970885 26970937 -128659183 + AT_rich Low_complexity Low_complexity 1 52 0 6 790 4245 121 41 11 chr4 26971017 26971676 -128658444 - Lx3C LINE L1 -32 6944 6266 6 790 997 258 83 29 chr4 26971678 26972144 -128657976 - RMER2 LTR ERV1 -26 541 3 6 790 378 0 0 0 chr4 26972179 26972221 -128657899 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 790 3228 38 8 0 chr4 26972585 26972976 -128657144 - MTA_Mm LTR MaLR -2 394 1 6 790 3389 93 10 18 chr4 26973023 26973514 -128656606 - RLTR1C LTR ERV1 -16 487 1 6 790 469 86 0 0 chr4 26973514 26973584 -128656536 - MMVL30-int LTR ERV1 0 3698 3629 6 790 7399 98 37 10 chr4 26973647 26975718 -128654402 - MMVL30-int LTR ERV1 -68 3630 1504 6 790 324 0 0 0 chr4 26975869 26975905 -128654215 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 790 468 0 0 0 chr4 26975906 26975958 -128654162 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 790 538 196 29 63 chr4 26976056 26976325 -128653795 - MMVL30-int LTR ERV1 -2115 1184 960 6 790 4418 119 3 38 chr4 26976409 26977116 -128653004 - MMVL30-int LTR ERV1 -2245 1453 772 6 790 267 79 0 0 chr4 26977530 26977568 -128652552 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 6 790 1406 214 87 102 chr4 26977605 26978146 -128651974 - MMVL30-int LTR ERV1 -7023 533 1 6 790 3469 103 4 4 chr4 26978159 26978654 -128651466 - RLTR1C LTR ERV1 -8 495 1 6 790 562 138 9 9 chr4 26978693 26978803 -128651317 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 790 216 0 0 0 chr4 26981813 26981837 -128648283 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 790 596 295 32 0 chr4 26981841 26981997 -128648123 - B3A SINE B2 -31 167 7 6 790 22 70 0 0 chr4 26982004 26982047 -128648073 + AT_rich Low_complexity Low_complexity 1 43 0 6 790 566 290 32 5 chr4 26982548 26982735 -128647385 - B3A SINE B2 -5 193 2 6 790 242 109 43 0 chr4 26982745 26982791 -128647329 + B3 SINE B2 64 111 -105 6 790 21 36 0 0 chr4 26982977 26983005 -128647115 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 1313 343 93 33 chr4 26983258 26983394 -128646726 - Lx8 LINE L1 -235 7238 7075 6 790 405 0 0 0 chr4 26983394 26983439 -128646681 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 790 1313 343 93 33 chr4 26983439 26983548 -128646572 - Lx8 LINE L1 -399 7074 6956 6 790 1163 243 96 17 chr4 26983548 26983904 -128646216 + ORR1C2 LTR MaLR 1 384 0 6 790 1313 343 93 33 chr4 26983904 26984485 -128645635 - Lx8 LINE L1 -518 6955 6361 6 790 26 88 0 0 chr4 26984789 26984857 -128645263 + AT_rich Low_complexity Low_complexity 1 68 0 6 790 1087 136 121 0 chr4 26984858 26985056 -128645064 - Lx3A LINE L1 -11 6970 6749 6 790 348 24 0 0 chr4 26985554 26985595 -128644525 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 790 381 352 63 23 chr4 26986617 26986735 -128643385 - Lx9 LINE L1 -27 7617 7491 6 790 188 67 33 0 chr4 26986735 26986765 -128643355 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 790 381 352 63 23 chr4 26986765 26986826 -128643294 - Lx9 LINE L1 -154 7490 7422 6 790 309 51 0 0 chr4 26986826 26986865 -128643255 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 790 381 352 63 23 chr4 26986865 26987161 -128642959 - Lx9 LINE L1 -223 7421 7123 6 790 326 275 27 27 chr4 26987187 26987299 -128642821 - Lx9 LINE L1 -1097 6547 6436 6 790 1449 292 38 34 chr4 26987478 26987984 -128642136 + Lx5 LINE L1 6542 7049 -1 6 790 374 272 22 34 chr4 26988688 26988917 -128641203 + (TCTG)n Simple_repeat Simple_repeat 1 226 0 6 790 1955 317 106 26 chr4 26989085 26989921 -128640199 - Lx8 LINE L1 -212 7261 6392 6 790 941 258 33 86 chr4 26989921 26990315 -128639805 - ORR1D1 LTR MaLR -1 373 1 6 790 1955 317 106 26 chr4 26990315 26990435 -128639685 - Lx8 LINE L1 -1082 6391 6229 6 790 471 319 47 21 chr4 26991003 26991195 -128638925 - ORR1E LTR MaLR 0 359 163 6 790 219 214 0 0 chr4 26991197 26991267 -128638853 + A-rich Low_complexity Low_complexity 1 70 0 6 790 490 362 11 0 chr4 26991267 26991444 -128638676 - ORR1E LTR MaLR -175 184 6 6 790 494 318 109 48 chr4 26991549 26991664 -128638456 - L1M2 LINE L1 -2131 4012 3897 6 790 1333 216 104 121 chr4 26991664 26992202 -128637918 - RLTR24 LTR ERV1 0 529 1 6 790 494 318 109 48 chr4 26992202 26992397 -128637723 - L1M2 LINE L1 -2247 3896 3683 6 790 38346 40 2 7 chr4 26992401 26998563 -128631557 - L1Md_F2 LINE L1 0 6582 452 6 790 2041 200 8 1 chr4 26998990 26999420 -128630700 - L1_Mur2 LINE L1 -684 5494 5027 6 790 2652 155 16 11 chr4 26999420 26999992 -128630128 + Lx2 LINE L1 5450 6023 -974 6 790 3446 171 8 8 chr4 27000000 27000602 -128629518 + Lx2 LINE L1 6042 6643 -354 1 98 1164 169 8 38 chr4 27000593 27000833 -128629287 + Lx2 LINE L1 6765 6997 0 1 791 570 295 61 39 chr4 27001040 27001400 -128628720 - L1M2 LINE L1 -1745 4398 4031 2 791 244 315 46 9 chr4 27001491 27001600 -128628520 - MER58A DNA MER1_type -67 157 45 3 791 35 24 0 0 chr4 27001608 27001650 -128628470 + AT_rich Low_complexity Low_complexity 1 42 0 4 791 21 0 0 0 chr4 27002071 27002092 -128628028 + AT_rich Low_complexity Low_complexity 1 21 0 5 791 619 211 6 75 chr4 27002647 27002806 -128627314 - B1_Mur3 SINE Alu -1 148 1 6 791 387 0 0 0 chr4 27002944 27002987 -128627133 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 791 424 248 95 41 chr4 27003450 27003611 -128626509 - RMER20B LTR ERVK -349 167 1 8 791 351 0 0 0 chr4 27003630 27003669 -128626451 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 791 486 322 103 11 chr4 27003697 27003958 -128626162 - Lx8 LINE L1 -1017 6456 6172 1 791 1561 161 50 31 chr4 27004052 27004373 -128625747 + RLTR11B LTR ERVK 2 328 -125 1 791 900 296 53 44 chr4 27004375 27004714 -128625406 - RLTR41 LTR ERV1 0 446 105 1 791 756 151 8 0 chr4 27004816 27004942 -128625178 + RLTR11B LTR ERVK 327 453 0 1 791 1105 124 39 6 chr4 27005235 27005413 -128624707 + B2_Mm2 SINE B2 8 191 -4 1 791 549 244 39 137 chr4 27005656 27005860 -128624260 + B3 SINE B2 8 215 -1 1 791 228 130 0 0 chr4 27005889 27005935 -128624185 + (T)n Simple_repeat Simple_repeat 1 46 0 1 791 790 55 0 27 chr4 27005936 27006048 -128624072 - B1_Mm SINE Alu 0 147 39 1 791 308 133 0 0 chr4 27006248 27006293 -128623827 + tRNA-Lys-AAG tRNA tRNA 30 74 -2 1 791 526 301 146 42 chr4 27006326 27006755 -128623365 + L1MA6 LINE L1 5641 6114 -186 1 791 229 386 10 0 chr4 27007271 27007372 -128622748 + MLT1C LTR MaLR 362 463 -4 1 791 2119 124 16 0 chr4 27007772 27008094 -128622026 - ORR1A2 LTR MaLR 0 327 1 2 791 213 143 0 23 chr4 27008165 27008208 -128621912 + T-rich Low_complexity Low_complexity 4 45 0 2 791 799 166 43 0 chr4 27009622 27009785 -128620335 - Lx LINE L1 -12 6642 6473 2 791 416 241 42 24 chr4 27010623 27010789 -128619331 + Lx9 LINE L1 7476 7644 0 2 791 38 51 0 0 chr4 27010792 27010851 -128619269 + AT_rich Low_complexity Low_complexity 1 59 0 2 791 180 0 0 0 chr4 27011223 27011243 -128618877 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 791 5857 147 25 21 chr4 27011244 27012316 -128617804 - Lx3A LINE L1 -16 6965 5890 2 791 537 237 92 0 chr4 27012962 27013158 -128616962 - URR1B DNA MER1_type -3 222 6 2 791 433 335 69 57 chr4 27013244 27013375 -128616745 + MTE2a LTR MaLR 39 169 -210 2 791 248 0 31 0 chr4 27013375 27013407 -128616713 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 791 433 335 69 57 chr4 27013407 27013610 -128616510 + MTE2a LTR MaLR 170 377 -2 2 791 350 261 0 11 chr4 27013594 27013683 -128616437 + MTE2a-int LTR MaLR 1 88 -1282 2 791 465 319 81 72 chr4 27013818 27014262 -128615858 + MTE2a-int LTR MaLR 459 1317 -263 2 791 582 118 0 0 chr4 27014338 27014440 -128615680 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 791 404 309 134 42 chr4 27014472 27014688 -128615432 + MTD LTR MaLR 7 242 -177 3 791 903 143 6 34 chr4 27014725 27014902 -128615218 - Lx2B LINE L1 -1027 5982 5805 3 791 531 0 0 0 chr4 27014907 27014966 -128615154 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 791 404 115 344 0 chr4 27014969 27015065 -128615055 + URR1B DNA MER1_type 97 225 0 3 791 226 172 136 17 chr4 27015068 27015127 -128614993 + MTEb LTR MaLR 157 222 -157 3 791 384 22 0 0 chr4 27015781 27015826 -128614294 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 791 563 107 62 6 chr4 27016854 27017014 -128613106 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 3 791 180 0 0 0 chr4 27017054 27017074 -128613046 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 791 21 36 0 0 chr4 27017910 27017938 -128612182 + AT_rich Low_complexity Low_complexity 1 28 0 3 791 299 250 0 8 chr4 27017984 27018101 -128612019 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 791 278 140 0 0 chr4 27019032 27019082 -128611038 - MusHAL1 LINE L1 -488 2224 2175 4 791 1093 118 0 36 chr4 27019089 27019283 -128610837 + Lx3A LINE L1 6794 6980 -1 4 791 1288 107 5 37 chr4 27019319 27019533 -128610587 - MusHAL1 LINE L1 -537 2175 1969 4 791 6200 129 7 0 chr4 27019535 27020450 -128609670 + Lx LINE L1 5728 6648 -6 4 791 1636 245 74 0 chr4 27020546 27020938 -128609182 - MTC LTR MaLR 0 421 1 4 791 21 0 0 0 chr4 27021194 27021215 -128608905 + AT_rich Low_complexity Low_complexity 1 21 0 4 791 256 250 12 48 chr4 27021264 27021348 -128608772 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 4 791 661 208 31 37 chr4 27021413 27021601 -128608519 - B3 SINE B2 -9 186 5 4 791 497 378 30 39 chr4 27021601 27021835 -128608285 - B4A SINE B4 -58 234 3 4 791 360 0 0 0 chr4 27022465 27022505 -128607615 + (A)n Simple_repeat Simple_repeat 1 40 0 4 791 1220 60 0 6 chr4 27023236 27023403 -128606717 + (TTCTCC)n Simple_repeat Simple_repeat 6 171 0 5 791 207 0 0 0 chr4 27023959 27023982 -128606138 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 791 21 36 0 0 chr4 27024123 27024151 -128605969 + AT_rich Low_complexity Low_complexity 1 28 0 5 791 380 283 91 43 chr4 27024352 27024672 -128605448 + L1MEc LINE L1 2149 2493 -3828 5 791 232 292 0 0 chr4 27024977 27025042 -128605078 + L1MEc LINE L1 3771 3835 -2486 5 791 498 118 0 0 chr4 27025080 27025173 -128604947 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 791 3211 80 2 9 chr4 27025252 27025706 -128604414 + L1Md_F2 LINE L1 6130 6580 -2 5 791 188 67 33 0 chr4 27026005 27026035 -128604085 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 791 377 321 25 4 chr4 27026037 27026278 -128603842 + L1MEc LINE L1 4361 4606 -1715 5 791 5103 179 15 23 chr4 27026302 27027943 -128602177 + L1VL4 LINE L1 319 1924 -1893 5 791 1506 204 65 8 chr4 27027947 27028317 -128601803 + RLTR9B2 LTR ERVK 1 391 -12 5 791 9443 158 45 28 chr4 27028326 27031221 -128598899 + ETnERV2-int LTR ERVK 4 4082 -3324 5 791 6745 110 2 9 chr4 27031218 27031870 -128598250 + ETnERV2-int LTR ERVK 5260 5911 -1495 5 791 4459 60 0 19 chr4 27031870 27032459 -128597661 - L1Md_F2 LINE L1 0 6582 6005 5 791 6745 184 8 34 chr4 27032459 27033032 -128597088 + ETnERV2-int LTR ERVK 5912 6227 -1179 5 791 411 113 41 27 chr4 27033246 27033319 -128596801 + ETnERV2-int LTR ERVK 7331 7404 -2 5 791 1811 146 203 0 chr4 27033320 27033669 -128596451 + RLTR9B2 LTR ERVK 1 420 0 5 791 3098 110 2 2 chr4 27033669 27034142 -128595978 + L1_Mm LINE L1 2019 2491 -3392 6 791 4306 85 2 49 chr4 27034142 27034773 -128595347 + L1_Mus2 LINE L1 5966 6566 0 6 791 808 196 6 65 chr4 27034907 27035076 -128595044 - MTD LTR MaLR -235 184 26 6 791 427 273 41 8 chr4 27035732 27035854 -128594266 + B3 SINE B2 86 211 -5 6 791 378 0 0 0 chr4 27036612 27036654 -128593466 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 791 414 39 0 0 chr4 27036654 27036706 -128593414 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 791 373 350 42 8 chr4 27037431 27037549 -128592571 - RSINE1 SINE B4 -33 132 11 6 791 845 262 118 10 chr4 27038958 27039262 -128590858 + Lx7 LINE L1 4752 5088 -792 6 791 779 229 16 0 chr4 27039259 27039447 -128590673 + Lx2 LINE L1 6014 6204 -793 6 791 2911 177 20 50 chr4 27039448 27040042 -128590078 + Lx2 LINE L1 6420 6995 -2 6 791 1878 129 3 6 chr4 27040076 27040387 -128589733 + L1_Mus4 LINE L1 6326 6635 -1 6 791 1899 297 112 42 chr4 27040404 27041816 -128588304 + Lx7 LINE L1 5118 6634 -1062 6 791 1647 260 52 22 chr4 27041816 27042320 -128587800 + Lx2B LINE L1 6482 7000 0 7 791 1827 308 36 20 chr4 27042326 27043010 -128587110 + Lx7 LINE L1 6644 7338 -358 6 791 29 47 0 0 chr4 27043305 27043348 -128586772 + AT_rich Low_complexity Low_complexity 1 43 0 7 791 330 26 0 0 chr4 27044682 27044721 -128585399 + (T)n Simple_repeat Simple_repeat 1 39 0 7 791 579 126 0 0 chr4 27044818 27044913 -128585207 + (GGAGA)n Simple_repeat Simple_repeat 2 96 0 7 791 324 351 70 0 chr4 27045926 27046040 -128584080 + RSINE1 SINE B4 16 137 -28 7 791 180 125 0 0 chr4 27046062 27046094 -128584026 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 791 4201 62 9 5 chr4 27046556 27047108 -128583012 - L1Md_F2 LINE L1 0 6582 6029 7 791 2793 71 5 0 chr4 27047108 27047489 -128582631 + L1_Mm LINE L1 4983 5365 -518 7 791 361 333 123 47 chr4 27047892 27048257 -128581863 - L1M5 LINE L1 -1355 4791 4399 7 791 1002 141 21 11 chr4 27048783 27048970 -128581150 + Lx3_Mus LINE L1 6813 7001 -8 7 791 21 0 0 0 chr4 27049230 27049251 -128580869 + AT_rich Low_complexity Low_complexity 1 21 0 8 791 348 24 0 0 chr4 27049263 27049304 -128580816 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 791 1144 221 25 8 chr4 27049304 27049546 -128580574 + ORR1B2 LTR MaLR 7 252 -115 8 791 1199 245 131 3 chr4 27050603 27050976 -128579144 - MTC LTR MaLR 0 421 1 8 791 492 18 0 0 chr4 27051186 27051243 -128578877 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 8 791 946 114 0 8 chr4 27051243 27051376 -128578744 - B1_Mus2 SINE Alu -12 135 4 8 791 233 299 65 124 chr4 27051460 27051613 -128578507 - Charlie10 DNA MER1_type -383 2439 2296 8 791 529 342 32 115 chr4 27051614 27052076 -128578044 + RMER15-int LTR ERVL 4313 4736 -263 8 791 886 98 21 0 chr4 27052130 27052273 -128577847 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 8 791 370 330 21 53 chr4 27052716 27052959 -128577161 - Lx9 LINE L1 -429 7215 6981 8 791 220 326 56 0 chr4 27053757 27053846 -128576274 + MIRb SINE MIR 133 226 -42 9 791 22 0 0 0 chr4 27054371 27054393 -128575727 + AT_rich Low_complexity Low_complexity 1 22 0 9 791 681 203 28 63 chr4 27055661 27055803 -128574317 - B1_Mur3 SINE Alu -7 142 6 9 791 314 326 92 64 chr4 27055687 27055828 -128574292 - B4 SINE B4 -90 202 58 9 791 1381 234 80 15 chr4 27056179 27056518 -128573602 - ORR1B1 LTR MaLR -32 362 2 9 791 23 54 0 0 chr4 27058165 27058202 -128571918 + AT_rich Low_complexity Low_complexity 1 37 0 9 791 1131 59 0 0 chr4 27058884 27059020 -128571100 + B1_Mus1 SINE Alu 2 137 -11 9 791 180 0 0 0 chr4 27059022 27059042 -128571078 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 791 459 0 0 0 chr4 27059072 27059123 -128570997 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 791 497 264 16 0 chr4 27059147 27059276 -128570844 - Lx9 LINE L1 -737 6907 6777 9 791 593 186 8 25 chr4 27059280 27059401 -128570719 + RMER19C LTR ERVK 1 119 -492 1 791 1452 211 18 6 chr4 27059459 27059792 -128570328 - Lx6 LINE L1 -2048 3832 3496 1 791 5724 249 39 70 chr4 27059789 27059920 -128570200 + Lx6 LINE L1 3827 3948 -1929 1 791 7295 16 2 0 chr4 27059920 27060740 -128569380 + RLTR13B2 LTR ERVK 1 822 0 1 791 5724 249 39 70 chr4 27060740 27061213 -128568907 + Lx6 LINE L1 3949 4426 -1451 1 791 1270 163 5 0 chr4 27061213 27061422 -128568698 + Lx2 LINE L1 6782 6991 -6 1 791 5724 249 39 70 chr4 27061422 27061494 -128568626 + Lx6 LINE L1 4427 4431 -1446 1 791 261 0 0 0 chr4 27061494 27061523 -128568597 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 791 441 0 0 0 chr4 27061523 27061571 -128568549 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 791 5724 249 39 70 chr4 27061571 27062133 -128567987 + Lx6 LINE L1 4432 4973 -904 1 791 324 0 0 0 chr4 27062133 27062169 -128567951 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 791 5724 256 36 70 chr4 27062169 27063445 -128566675 + Lx6 LINE L1 4974 6243 -1217 1 791 4148 124 19 16 chr4 27063445 27064115 -128566005 - L1_Mus3 LINE L1 -8 6630 5959 1 791 3290 272 29 69 chr4 27064115 27064646 -128565474 + Lx6 LINE L1 6244 6751 -709 1 791 423 52 0 0 chr4 27064646 27064704 -128565416 + (A)n Simple_repeat Simple_repeat 1 58 0 1 791 1147 296 84 5 chr4 27064705 27065088 -128565032 + Lx6 LINE L1 6740 7152 -308 1 791 1613 186 52 9 chr4 27065129 27065454 -128564666 + Lx2 LINE L1 6659 6997 0 1 791 381 86 0 0 chr4 27065506 27065564 -128564556 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 791 849 294 76 9 chr4 27065564 27065894 -128564226 - Lx7 LINE L1 -277 7419 7068 1 791 330 318 81 25 chr4 27065889 27066283 -128563837 + L1M2 LINE L1 4985 5400 -743 1 791 21 57 0 0 chr4 27067805 27067840 -128562280 + AT_rich Low_complexity Low_complexity 1 35 0 1 791 29650 105 20 3 chr4 27067845 27072694 -128557426 + L1Md_F2 LINE L1 315 5234 -649 1 791 294 50 0 0 chr4 27072694 27072734 -128557386 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 791 29650 97 10 4 chr4 27072734 27073068 -128557052 + L1Md_F2 LINE L1 5235 5583 -300 1 791 7050 86 14 6 chr4 27073070 27074057 -128556063 + L1Md_F2 LINE L1 5587 6581 -1 1 791 32396 80 6 1 chr4 27074199 27079451 -128550669 + L1Md_F2 LINE L1 307 5586 -297 1 791 7599 66 6 3 chr4 27079451 27080441 -128549679 + L1Md_F2 LINE L1 5587 6579 -3 1 791 1002 300 61 16 chr4 27080567 27080651 -128549469 + MTE2a LTR MaLR 1 92 -287 1 791 921 135 28 0 chr4 27080651 27080792 -128549328 + B1_Mus1 SINE Alu 2 146 -2 1 791 1002 300 61 16 chr4 27080792 27081070 -128549050 + MTE2a LTR MaLR 93 379 0 1 791 235 398 0 22 chr4 27081155 27081245 -128548875 + B1F SINE Alu 62 149 0 1 791 23 33 0 0 chr4 27081705 27081735 -128548385 + AT_rich Low_complexity Low_complexity 1 30 0 1 791 295 313 101 28 chr4 27081739 27081956 -128548164 + L1M2 LINE L1 5537 5769 -522 1 791 275 391 18 18 chr4 27082123 27082235 -128547885 + PB1 SINE Alu 9 120 -7 1 791 470 397 18 44 chr4 27082568 27082842 -128547278 + B4A SINE B4 25 291 -1 1 791 687 12 0 0 chr4 27082864 27082944 -128547176 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 791 1006 89 0 29 chr4 27082944 27083118 -128547002 + (TA)n Simple_repeat Simple_repeat 2 170 0 1 791 22 0 0 0 chr4 27083513 27083535 -128546585 + AT_rich Low_complexity Low_complexity 1 22 0 1 791 300 27 0 0 chr4 27083722 27083759 -128546361 + (CATA)n Simple_repeat Simple_repeat 4 40 0 1 791 207 0 0 0 chr4 27083926 27083949 -128546171 + (GAGTG)n Simple_repeat Simple_repeat 3 25 0 1 791 3338 148 12 104 chr4 27084272 27084435 -128545685 - L1_Mm LINE L1 -812 5071 4932 1 791 8092 42 4 7 chr4 27084435 27085434 -128544686 + L1Md_F3 LINE L1 5587 6582 -2 1 791 3338 148 12 104 chr4 27085434 27086009 -128544111 - L1_Mm LINE L1 -952 4931 4401 1 791 3712 106 72 3 chr4 27086012 27086582 -128543538 + L1_Mus3 LINE L1 6026 6634 -4 1 791 366 277 18 18 chr4 27086586 27086700 -128543420 + MTC-int LTR MaLR 42 155 -1103 1 791 558 337 54 12 chr4 27086721 27087130 -128542990 - L1_Rod LINE L1 -3339 2508 2083 1 791 396 0 0 0 chr4 27087368 27087412 -128542708 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 791 194 98 49 0 chr4 27087483 27087524 -128542596 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 791 288 0 0 0 chr4 27087539 27087571 -128542549 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 791 3394 163 14 3 chr4 27087571 27088137 -128541983 - Lx3_Mus LINE L1 -23 6986 6415 1 791 28 79 0 0 chr4 27088995 27089058 -128541062 + AT_rich Low_complexity Low_complexity 1 63 0 1 791 304 320 20 0 chr4 27089242 27089342 -128540778 - Lx7 LINE L1 -375 7321 7220 1 791 25 31 0 0 chr4 27089437 27089469 -128540651 + AT_rich Low_complexity Low_complexity 1 32 0 1 791 1797 293 26 20 chr4 27089469 27090005 -128540115 - Lx6 LINE L1 -182 7278 6740 1 791 6967 46 1 9 chr4 27090019 27090889 -128539231 - L1Md_F2 LINE L1 0 6582 5720 1 791 1218 270 34 6 chr4 27090892 27091249 -128538871 - Lx6 LINE L1 -705 6755 6389 1 791 1951 222 52 37 chr4 27091260 27091613 -128538507 + Lx6 LINE L1 5358 5707 -1753 1 791 477 0 0 0 chr4 27091613 27091666 -128538454 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 791 1951 277 57 39 chr4 27091666 27092294 -128537826 + Lx6 LINE L1 5708 6343 -1117 1 791 255 146 0 0 chr4 27092414 27092469 -128537651 + (A)n Simple_repeat Simple_repeat 1 55 0 1 791 27305 83 2 20 chr4 27092829 27097373 -128532747 - L1Md_F LINE L1 -912 4971 511 1 791 23 54 0 0 chr4 27097713 27097750 -128532370 + AT_rich Low_complexity Low_complexity 1 37 0 1 791 28 48 0 0 chr4 27097794 27097836 -128532284 + AT_rich Low_complexity Low_complexity 1 42 0 1 791 310 213 0 26 chr4 27097892 27097969 -128532151 + L1_Rod LINE L1 4646 4720 -1127 1 791 575 322 88 14 chr4 27097969 27098401 -128531719 + L1_Mur3 LINE L1 4856 5319 -561 1 791 47 33 0 0 chr4 27098422 27098483 -128531637 + AT_rich Low_complexity Low_complexity 1 61 0 1 791 7746 141 9 16 chr4 27098487 27099768 -128530352 - Lx3A LINE L1 -7 6974 5703 1 791 635 244 51 6 chr4 27099771 27099835 -128530285 + L1_Mur1 LINE L1 5385 5449 -437 1 791 251 93 23 0 chr4 27099835 27099878 -128530242 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 791 635 244 51 6 chr4 27099878 27099990 -128530130 + L1_Mur1 LINE L1 5450 5569 -317 1 791 461 254 0 45 chr4 27100172 27100304 -128529816 + Lx9 LINE L1 7294 7419 -225 1 791 6298 156 51 5 chr4 27100363 27101510 -128528610 - Lx3C LINE L1 0 6976 5725 1 791 521 62 0 0 chr4 27101511 27101576 -128528544 + Lx3C LINE L1 5676 5740 -1236 1 791 24 53 0 0 chr4 27101597 27101635 -128528485 + AT_rich Low_complexity Low_complexity 1 38 0 1 791 195 129 0 0 chr4 27101640 27101671 -128528449 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 791 490 250 10 0 chr4 27101688 27101788 -128528332 + Lx9 LINE L1 6383 6483 -1161 1 791 26 82 0 0 chr4 27101788 27101849 -128528271 + AT_rich Low_complexity Low_complexity 1 61 0 1 791 1019 194 216 8 chr4 27102567 27102822 -128527298 - RMER6D LTR ERVK -404 316 9 1 791 281 210 31 31 chr4 27103061 27103125 -128526995 - MTC LTR MaLR -224 197 134 1 791 239 375 0 0 chr4 27103190 27103262 -128526858 - B3A SINE B2 -122 76 5 1 791 869 134 0 29 chr4 27104813 27104951 -128525169 - B1_Mus1 SINE Alu -13 135 2 1 791 271 350 114 22 chr4 27104985 27105169 -128524951 + MTEa LTR MaLR 13 213 -166 1 791 240 342 79 0 chr4 27105429 27105543 -128524577 + B1F SINE Alu 26 148 -1 1 791 25 0 0 0 chr4 27105622 27105647 -128524473 + AT_rich Low_complexity Low_complexity 1 25 0 1 791 31 58 0 0 chr4 27105784 27105836 -128524284 + AT_rich Low_complexity Low_complexity 1 52 0 1 791 536 287 82 29 chr4 27105889 27106097 -128524023 - MTE2a LTR MaLR 0 379 161 1 791 3976 117 25 125 chr4 27106118 27106959 -128523161 - L1_Mus3 LINE L1 -12 6626 5870 1 791 3003 83 17 0 chr4 27106944 27107353 -128522767 - L1_Mm LINE L1 -220 5663 5248 1 791 1884 156 0 0 chr4 27107350 27107664 -128522456 + L1_Mm LINE L1 4965 5278 -605 1 791 364 317 45 25 chr4 27107674 27107871 -128522249 - MTE2a LTR MaLR -233 186 1 1 791 388 301 27 11 chr4 27107913 27108101 -128522019 + Lx7 LINE L1 6074 6264 -1432 1 791 7214 184 35 10 chr4 27108160 27110259 -128519861 + Lx4A LINE L1 4894 7058 0 1 791 555 122 0 0 chr4 27110496 27110578 -128519542 - Lx6 LINE L1 -728 6732 6651 1 791 2668 234 39 14 chr4 27110628 27111266 -128518854 + Lx6 LINE L1 6275 6928 -532 1 791 1305 233 175 57 chr4 27111292 27111393 -128518727 + RMER6D LTR ERVK 4 113 -607 1 791 2811 109 5 0 chr4 27111393 27111788 -128518332 + MTB LTR MaLR 3 399 -1 1 791 1305 233 175 57 chr4 27111788 27111832 -128518288 + RMER6D LTR ERVK 114 141 -579 1 791 594 0 0 0 chr4 27111832 27111898 -128518222 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 791 1305 233 131 47 chr4 27111898 27112380 -128517740 + RMER6D LTR ERVK 142 690 0 1 791 1092 292 43 14 chr4 27112380 27112731 -128517389 + Lx7 LINE L1 6972 7332 -364 1 791 1028 241 68 15 chr4 27112830 27113154 -128516966 + Lx7 LINE L1 7355 7695 -1 1 791 21 0 0 0 chr4 27113656 27113677 -128516443 + AT_rich Low_complexity Low_complexity 1 21 0 1 791 720 306 160 10 chr4 27116448 27116553 -128513567 + Lx6 LINE L1 293 433 -7295 1 791 425 273 226 6 chr4 27116553 27116730 -128513390 - B3 SINE B2 0 216 1 1 791 1739 282 102 3 chr4 27116730 27117270 -128512850 + Lx6 LINE L1 17 750 -6978 1 791 1572 207 8 58 chr4 27117262 27117662 -128512458 + Lx6 LINE L1 2579 2958 -2922 1 791 246 62 0 0 chr4 27117730 27117762 -128512358 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 791 379 262 28 0 chr4 27117767 27117874 -128512246 + Lx6 LINE L1 4627 4736 -1144 1 791 857 228 144 46 chr4 27118501 27118786 -128511334 + Lx6 LINE L1 4739 5051 -829 1 791 221 0 35 0 chr4 27118808 27118837 -128511283 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 791 4256 208 54 14 chr4 27118934 27119724 -128510396 + Lx6 LINE L1 5061 5897 -1563 1 791 474 18 0 0 chr4 27119724 27119779 -128510341 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 791 4256 287 107 25 chr4 27119779 27121206 -128508914 + Lx6 LINE L1 5898 7430 -30 1 791 328 264 35 7 chr4 27121477 27121618 -128508502 + L1MA7 LINE L1 6141 6285 -6 1 791 398 336 62 12 chr4 27121649 27121890 -128508230 + L1MC3 LINE L1 6866 7118 -667 1 791 216 0 0 0 chr4 27121976 27122000 -128508120 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 791 531 0 0 0 chr4 27122001 27122060 -128508060 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 791 2307 45 0 93 chr4 27122154 27122498 -128507622 + L1Md_F3 LINE L1 6273 6584 0 1 791 639 272 98 0 chr4 27122570 27122754 -128507366 - B3 SINE B2 -14 202 1 1 791 354 363 61 9 chr4 27122941 27123169 -128506951 + L1MC3 LINE L1 7526 7765 -20 1 791 511 301 33 24 chr4 27123186 27123397 -128506723 - B3 SINE B2 0 216 4 1 791 264 59 0 0 chr4 27125609 27125643 -128504477 + (T)n Simple_repeat Simple_repeat 1 34 0 1 791 4713 34 0 0 chr4 27125658 27126216 -128503904 - L1Md_A LINE L1 0 6582 6025 1 791 8116 17 0 0 chr4 27126216 27127164 -128502956 + L1_Mm LINE L1 3706 4653 -1230 1 791 495 52 0 38 chr4 27127302 27127382 -128502738 + L1Md_F3 LINE L1 6494 6570 -14 1 791 1387 239 8 37 chr4 27127398 27127772 -128502348 + ORR1B2 LTR MaLR 5 367 0 1 791 233 179 47 12 chr4 27127869 27127954 -128502166 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 791 378 268 39 47 chr4 27127962 27128091 -128502029 - RMER10B LTR ERVL -76 322 195 1 791 406 188 55 73 chr4 27128515 27128624 -128501496 + Lx9 LINE L1 6911 7017 -627 1 791 886 243 23 31 chr4 27128859 27128930 -128501190 - L1_Mur3 LINE L1 -952 4928 4863 2 791 186 43 0 0 chr4 27128930 27128953 -128501167 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 791 886 243 23 31 chr4 27128953 27129140 -128500980 - L1_Mur3 LINE L1 -1018 4862 4672 2 791 183 42 0 0 chr4 27129143 27129167 -128500953 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 791 965 280 114 37 chr4 27129196 27129304 -128500816 + Lx7 LINE L1 5333 5446 -434 2 791 242 29 0 28 chr4 27129304 27129340 -128500780 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 791 965 272 135 25 chr4 27129340 27129825 -128500295 + Lx7 LINE L1 5447 5970 -1726 2 791 848 276 57 22 chr4 27129876 27130106 -128500014 + RLTR18B LTR ERVK 270 507 -5 2 791 877 311 19 67 chr4 27130131 27130548 -128499572 + Lx7 LINE L1 6159 6555 -1141 2 791 294 345 58 41 chr4 27130558 27130730 -128499390 + Lx7 LINE L1 7039 7213 -483 2 791 962 169 0 4 chr4 27130730 27130977 -128499143 + GA-rich Low_complexity Low_complexity 1 245 0 2 791 285 195 33 58 chr4 27131064 27131184 -128498936 + T-rich Low_complexity Low_complexity 6 122 0 2 791 30 0 0 61 chr4 27131281 27131330 -128498790 + AT_rich Low_complexity Low_complexity 1 46 0 2 791 1064 102 0 40 chr4 27131610 27131784 -128498336 + L1_Mus1 LINE L1 6401 6567 0 2 792 308 327 46 37 chr4 27132039 27132255 -128497865 - L1MB5 LINE L1 -54 6120 5903 2 792 1966 200 29 0 chr4 27132449 27132824 -128497296 - ORR1B1 LTR MaLR -8 386 1 2 792 306 287 62 31 chr4 27133017 27133114 -128497006 - PB1D9 SINE Alu -1 119 20 2 792 32 91 0 0 chr4 27133122 27133210 -128496910 + AT_rich Low_complexity Low_complexity 1 88 0 2 792 311 154 15 0 chr4 27133303 27133368 -128496752 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 792 32 91 0 0 chr4 27133455 27133543 -128496577 + AT_rich Low_complexity Low_complexity 1 88 0 2 792 21 0 0 0 chr4 27133934 27133955 -128496165 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 21 36 0 0 chr4 27133966 27133994 -128496126 + AT_rich Low_complexity Low_complexity 1 28 0 2 792 243 0 0 0 chr4 27134928 27134955 -128495165 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 792 270 56 0 0 chr4 27136889 27136925 -128493195 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 792 266 67 0 22 chr4 27137600 27137646 -128492474 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 792 597 336 50 76 chr4 27138689 27139046 -128491074 - ORR1E LTR MaLR -2 357 10 2 792 326 272 20 80 chr4 27139245 27139378 -128490742 + MTD LTR MaLR 134 240 -156 2 792 270 409 7 0 chr4 27139359 27139496 -128490624 - MTE-int LTR MaLR -947 633 496 2 792 1774 118 7 7 chr4 27139824 27140105 -128490015 - Lx3_Mus LINE L1 -979 6030 5750 2 792 36265 38 1 7 chr4 27140111 27145300 -128484820 + L1Md_T LINE L1 439 5586 -297 2 792 8123 45 2 0 chr4 27145300 27146294 -128483826 + L1Md_T LINE L1 5587 6582 0 2 792 3153 99 84 0 chr4 27146305 27146771 -128483349 - Lx3_Mus LINE L1 -132 5754 5250 2 792 297 118 0 0 chr4 27146772 27146823 -128483297 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 792 299 271 141 0 chr4 27147445 27147530 -128482590 - PB1D7 SINE Alu -18 102 6 2 792 192 40 0 0 chr4 27147778 27147803 -128482317 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 792 384 182 212 0 chr4 27147829 27147928 -128482192 - PB1D7 SINE Alu 0 120 1 2 792 500 283 0 30 chr4 27148073 27148204 -128481916 + B1F SINE Alu 4 130 -19 2 792 301 330 11 0 chr4 27148635 27148726 -128481394 + MLT1H1 LTR MaLR 9 100 -455 2 792 856 274 0 0 chr4 27148755 27148959 -128481161 - B3 SINE B2 -9 207 4 2 792 279 290 19 39 chr4 27149085 27149189 -128480931 - MTEa LTR MaLR 0 379 278 2 792 4167 106 12 36 chr4 27149580 27150267 -128479853 - L1_Mur1 LINE L1 -632 5254 4585 2 792 23 33 0 0 chr4 27150699 27150729 -128479391 + AT_rich Low_complexity Low_complexity 1 30 0 2 792 393 109 0 0 chr4 27150961 27151025 -128479095 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 792 3426 175 23 42 chr4 27152642 27153351 -128476769 - Lx3C LINE L1 -2 6974 6280 2 792 514 207 0 9 chr4 27153352 27153464 -128476656 + L1_Mur1 LINE L1 4898 5008 -878 2 792 6803 125 53 9 chr4 27153464 27154833 -128475287 + Lx3A LINE L1 4733 6158 -823 2 792 2797 178 50 3 chr4 27154838 27155402 -128474718 + Lx3A LINE L1 6388 6977 -4 2 792 1631 181 55 0 chr4 27155475 27155784 -128474336 + Lx3C LINE L1 5955 6280 -696 2 792 22 35 0 0 chr4 27155878 27155907 -128474213 + AT_rich Low_complexity Low_complexity 1 29 0 2 792 2287 185 83 26 chr4 27156248 27156741 -128473379 + RLTR11A LTR ERVK 1 521 -7 2 792 747 62 0 0 chr4 27156895 27156992 -128473128 + (GAAA)n Simple_repeat Simple_repeat 2 98 0 2 792 463 252 14 35 chr4 27157105 27157249 -128472871 - RLTR9A LTR ERVK 0 368 228 2 792 219 157 0 0 chr4 27157830 27157881 -128472239 + T-rich Low_complexity Low_complexity 1 51 0 2 792 242 116 0 23 chr4 27158490 27158534 -128471586 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 792 726 294 66 40 chr4 27158891 27159195 -128470925 - RodERV21-int LTR ERV1 -198 4793 4482 2 792 501 17 0 0 chr4 27159195 27159253 -128470867 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 792 417 95 0 13 chr4 27159293 27159367 -128470753 + L1_Mus1 LINE L1 5929 6004 -580 2 792 1445 363 38 45 chr4 27159695 27160925 -128469195 - RodERV21-int LTR ERV1 -881 4110 2889 2 792 279 275 73 52 chr4 27161329 27161551 -128468569 - MURVY-int LTR ERV1 -2498 4954 4760 2 792 456 236 40 36 chr4 27162019 27162226 -128467894 - MER52-int LTR ERV1 -1987 5104 4943 2 792 25 0 0 0 chr4 27162960 27162985 -128467135 + AT_rich Low_complexity Low_complexity 1 25 0 2 792 709 217 18 6 chr4 27163222 27163389 -128466731 - URR1A DNA MER1_type 0 226 58 2 792 4292 54 0 2 chr4 27164476 27165012 -128465108 - L1Md_F2 LINE L1 -12 6570 6036 2 792 3138 192 31 17 chr4 27168005 27168987 -128461133 + Lx5 LINE L1 916 1926 -3951 2 792 244 301 125 66 chr4 27169510 27169735 -128460385 - RLTR20D LTR ERVK -256 249 32 2 792 3604 134 113 21 chr4 27169735 27170631 -128459489 + Lx LINE L1 5676 6653 -1 2 792 12324 195 32 25 chr4 27170630 27173511 -128456609 + Lx5 LINE L1 3046 5936 -1114 2 792 441 271 109 45 chr4 27173514 27173715 -128456405 + Lx5 LINE L1 6834 7047 -3 2 792 22 0 0 0 chr4 27174478 27174500 -128455620 + AT_rich Low_complexity Low_complexity 1 22 0 2 792 267 320 109 23 chr4 27174517 27174645 -128455475 - Lx8 LINE L1 -262 7211 7073 2 792 618 14 0 0 chr4 27174993 27175064 -128455056 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2 792 26 30 0 0 chr4 27175257 27175290 -128454830 + AT_rich Low_complexity Low_complexity 1 33 0 2 792 345 62 0 0 chr4 27175376 27175424 -128454696 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 792 339 25 0 0 chr4 27175424 27175464 -128454656 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 792 358 314 101 34 chr4 27175888 27176066 -128454054 - ORR1E LTR MaLR -7 352 163 2 792 37 0 0 0 chr4 27176071 27176108 -128454012 + AT_rich Low_complexity Low_complexity 1 37 0 2 792 1175 54 7 0 chr4 27176109 27176256 -128453864 - B1_Mus1 SINE Alu 0 148 1 2 792 243 88 0 0 chr4 27176389 27176423 -128453697 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 2 792 24 53 0 0 chr4 27176902 27176940 -128453180 + AT_rich Low_complexity Low_complexity 1 38 0 2 792 1196 86 0 17 chr4 27177089 27177266 -128452854 - L1_Mus2 LINE L1 0 6566 6393 2 792 451 0 0 33 chr4 27177907 27177968 -128452152 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 792 608 0 14 0 chr4 27178107 27178179 -128451941 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 792 273 197 0 0 chr4 27178179 27178245 -128451875 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 792 1972 250 15 32 chr4 27179227 27179690 -128450430 - Lx5 LINE L1 -547 6503 6049 2 792 1296 222 2 154 chr4 27179693 27180141 -128449979 + Lx5 LINE L1 5375 5754 -132 2 792 282 151 0 20 chr4 27180156 27180220 -128449900 + Lx5 LINE L1 5966 6028 -1030 2 792 270 0 0 0 chr4 27180342 27180372 -128449748 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 792 294 143 0 0 chr4 27180372 27180421 -128449699 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 792 1348 162 118 54 chr4 27181024 27181190 -128448930 + RMER16 LTR ERVK 200 385 -148 2 792 1688 0 0 0 chr4 27181190 27181384 -128448736 + L1Md_T LINE L1 6389 6582 0 2 792 1348 162 118 54 chr4 27181384 27181531 -128448589 + RMER16 LTR ERVK 386 533 0 2 792 249 292 49 16 chr4 27181557 27181673 -128448447 - RNLTR23 LTR ERVK 0 642 540 2 792 25 31 0 0 chr4 27182248 27182280 -128447840 + AT_rich Low_complexity Low_complexity 1 32 0 2 792 42 48 0 0 chr4 27182753 27182816 -128447304 + AT_rich Low_complexity Low_complexity 1 63 0 2 792 671 144 21 7 chr4 27182818 27182958 -128447162 + L1_Mus3 LINE L1 6497 6638 0 2 792 69 72 0 0 chr4 27182964 27183103 -128447017 + AT_rich Low_complexity Low_complexity 1 139 0 2 792 24 0 0 0 chr4 27183213 27183237 -128446883 + AT_rich Low_complexity Low_complexity 1 24 0 2 792 189 0 0 0 chr4 27183400 27183421 -128446699 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 792 13737 30 0 0 chr4 27183504 27185818 -128444302 - L1Md_A LINE L1 -1 6581 4267 2 792 327 325 80 58 chr4 27187221 27187446 -128442674 + L1MC LINE L1 2690 2919 -3227 2 792 433 301 77 12 chr4 27187758 27188017 -128442103 - L1M2 LINE L1 -705 5607 5332 2 792 887 291 60 20 chr4 27188987 27189289 -128440831 + ORR1D1 LTR MaLR 61 374 0 2 792 298 289 40 0 chr4 27189291 27189367 -128440753 + B4 SINE B4 39 117 -175 2 792 243 0 0 0 chr4 27189368 27189395 -128440725 + (CTA)n Simple_repeat Simple_repeat 1 27 0 2 792 288 0 0 0 chr4 27189395 27189427 -128440693 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2 792 474 18 0 0 chr4 27189427 27189482 -128440638 + (GAA)n Simple_repeat Simple_repeat 2 56 0 2 792 204 312 0 24 chr4 27189522 27189604 -128440516 + (CATA)n Simple_repeat Simple_repeat 4 83 0 2 792 1264 63 6 6 chr4 27189943 27190119 -128440001 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 792 243 0 0 0 chr4 27190119 27190146 -128439974 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 2 792 318 50 0 0 chr4 27190148 27190188 -128439932 + (TCC)n Simple_repeat Simple_repeat 2 41 0 2 792 694 301 88 26 chr4 27190236 27190509 -128439611 + Lx8 LINE L1 7027 7316 -157 2 792 22 56 0 0 chr4 27190704 27190740 -128439380 + AT_rich Low_complexity Low_complexity 1 36 0 3 792 202 231 0 44 chr4 27190952 27191020 -128439100 + A-rich Low_complexity Low_complexity 5 69 0 3 792 263 399 111 34 chr4 27191640 27191993 -128438127 + MLT2B1 LTR ERVL 49 428 -92 3 792 183 80 0 0 chr4 27192071 27192096 -128438024 + (TATG)n Simple_repeat Simple_repeat 4 28 0 3 792 303 142 38 0 chr4 27192245 27192307 -128437813 + B1_Mus2 SINE Alu 54 123 -26 3 792 5253 201 23 10 chr4 27192311 27194083 -128436037 - Lx2B LINE L1 -247 6753 4950 3 792 284 327 10 0 chr4 27194376 27194480 -128435640 - Lx8 LINE L1 -583 6890 6786 3 792 2872 105 0 53 chr4 27194839 27195291 -128434829 + L1_Mus2 LINE L1 6139 6566 0 3 792 570 317 34 15 chr4 27195448 27195653 -128434467 + B3 SINE B2 1 209 -7 3 792 1014 83 0 0 chr4 27195891 27196035 -128434085 - L1_Mus2 LINE L1 0 6566 6423 3 792 6311 178 64 35 chr4 27196038 27196200 -128433920 - RMER12B LTR ERVK -17 1387 1254 3 792 339 65 0 0 chr4 27196200 27196246 -128433874 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 792 6311 178 64 35 chr4 27196246 27196292 -128433828 - RMER12B LTR ERVK -151 1253 1189 3 792 228 35 0 0 chr4 27196292 27196321 -128433799 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 792 6311 178 64 35 chr4 27196321 27197459 -128432661 - RMER12B LTR ERVK -216 1188 1 3 792 337 132 44 0 chr4 27197514 27197605 -128432515 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 3 792 4641 283 52 59 chr4 27197618 27198035 -128432085 - Lx7 LINE L1 -284 7412 6972 3 792 3179 47 5 0 chr4 27198035 27198418 -128431702 + IAPEY_LTR LTR ERVK 1 385 0 3 792 4641 283 52 59 chr4 27198418 27199122 -128430998 - Lx7 LINE L1 -725 6971 6247 3 792 1863 88 4 15 chr4 27199122 27199388 -128430732 + L1_Mus2 LINE L1 6304 6566 0 3 792 4641 283 48 63 chr4 27199388 27200240 -128429880 - Lx7 LINE L1 -1450 6246 5480 3 792 582 294 100 0 chr4 27200289 27200459 -128429661 - MTC LTR MaLR -234 187 1 3 792 444 224 8 49 chr4 27200459 27200581 -128429539 - Lx2B LINE L1 -2257 3623 3507 3 792 305 364 13 0 chr4 27200967 27201118 -128429002 - HERVL40-int LTR ERVL -92 5438 5286 3 792 4952 168 39 22 chr4 27201382 27202324 -128427796 + RMER17B LTR ERVK 1 958 0 3 792 28 61 0 0 chr4 27203171 27203220 -128426900 + AT_rich Low_complexity Low_complexity 1 49 0 3 792 3270 46 2 0 chr4 27203247 27203642 -128426478 + MTA_Mm LTR MaLR 1 396 0 3 792 8265 65 13 1 chr4 27203642 27204727 -128425393 + MTA_Mm-int LTR MaLR 1 1098 0 3 792 1105 48 41 0 chr4 27204727 27204872 -128425248 + MTA_Mm LTR MaLR 1 151 -245 3 792 787 346 71 11 chr4 27205356 27205879 -128424241 - Lx8 LINE L1 -297 7176 6623 3 792 1841 219 19 6 chr4 27205885 27206247 -128423873 - ORR1C1 LTR MaLR -10 368 2 3 792 4059 139 114 72 chr4 27206626 27207201 -128422919 - RMER17A2 LTR ERVK 0 906 294 3 792 261 0 0 0 chr4 27207201 27207230 -128422890 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 792 297 0 0 0 chr4 27207230 27207262 -128422858 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 792 4059 139 114 72 chr4 27207262 27207555 -128422565 - RMER17A2 LTR ERVK -613 293 2 3 792 23 0 0 0 chr4 27208361 27208384 -128421736 + AT_rich Low_complexity Low_complexity 1 23 0 3 792 294 208 73 0 chr4 27208511 27208607 -128421513 - Lx LINE L1 -2 6652 6550 3 792 557 343 68 99 chr4 27208746 27209290 -128420830 + MT2A LTR ERVL 3 529 -4 3 792 859 295 68 58 chr4 27209735 27210116 -128420004 - Lx5 LINE L1 0 7050 6666 3 792 387 288 34 14 chr4 27210141 27210289 -128419831 - Lx6 LINE L1 -14 7446 7296 3 792 1018 44 15 0 chr4 27210520 27210656 -128419464 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 3 792 3482 208 107 9 chr4 27210657 27210934 -128419186 - Lx5 LINE L1 -12 7038 6731 3 792 566 100 10 0 chr4 27210934 27211034 -128419086 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 792 3482 208 107 9 chr4 27211034 27211533 -128418587 - Lx5 LINE L1 -320 6730 6187 3 792 714 234 63 33 chr4 27211533 27211819 -128418301 + Lx5 LINE L1 5832 6191 -859 3 792 1170 340 39 20 chr4 27211944 27212648 -128417472 - Lx9 LINE L1 -351 7293 6433 3 792 264 304 74 26 chr4 27212647 27212879 -128417241 - L1MA4 LINE L1 -230 6070 5818 3 792 388 280 41 27 chr4 27213154 27213301 -128416819 - Lx8 LINE L1 -533 6940 6792 3 792 252 281 0 0 chr4 27213587 27213651 -128416469 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 792 1043 289 112 45 chr4 27213654 27214415 -128415705 - Lx9 LINE L1 -132 5748 4937 3 792 203 106 0 78 chr4 27214418 27214453 -128415667 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 792 1081 109 0 13 chr4 27214453 27214602 -128415518 - B1_Mus1 SINE Alu -1 147 1 3 792 203 106 0 78 chr4 27214602 27214617 -128415503 + (TTTG)n Simple_repeat Simple_repeat 2 16 0 3 792 347 363 65 26 chr4 27214639 27214871 -128415249 - Lx8 LINE L1 -728 6745 6505 3 792 310 218 138 0 chr4 27214871 27214958 -128415162 + Lx6 LINE L1 4851 4949 -931 3 792 3780 205 22 35 chr4 27214962 27215796 -128414324 + Lx4B LINE L1 6204 7026 -32 3 792 180 77 0 0 chr4 27215810 27215836 -128414284 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 3 792 1229 235 42 130 chr4 27215928 27216834 -128413286 + Lx6 LINE L1 4987 6150 -1310 3 792 23 33 0 0 chr4 27216894 27216924 -128413196 + AT_rich Low_complexity Low_complexity 1 30 0 3 792 3656 87 4 0 chr4 27216996 27217492 -128412628 - L1_Mus1 LINE L1 -4 6563 6066 3 792 7949 57 1 0 chr4 27217492 27218484 -128411636 + L1Md_T LINE L1 5590 6582 0 3 792 28630 126 4 24 chr4 27218494 27223955 -128406165 - L1_Mus1 LINE L1 -492 6075 725 3 792 410 223 75 30 chr4 27223963 27224097 -128406023 - L1_Mus1 LINE L1 -5813 803 664 3 792 421 323 27 71 chr4 27224107 27224549 -128405571 - L1VL1 LINE L1 -5927 491 90 3 792 1946 254 46 4 chr4 27224655 27225136 -128404984 + Lx6 LINE L1 6171 6646 -814 3 792 1850 284 36 6 chr4 27225140 27225615 -128404505 + Lx6 LINE L1 6961 7449 -11 3 792 297 0 0 0 chr4 27225684 27225717 -128404403 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 792 267 183 27 27 chr4 27225723 27225796 -128404324 - L1_Rod LINE L1 -1246 4601 4529 3 792 248 59 0 0 chr4 27225842 27225876 -128404244 - L1_Rod LINE L1 -4078 1769 1736 3 792 392 244 14 142 chr4 27225896 27226044 -128404076 + ORR1D2 LTR MaLR 242 370 0 3 792 540 0 0 0 chr4 27226675 27226735 -128403385 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 792 1438 197 58 12 chr4 27228164 27228493 -128401627 - RMER1C Other Other -1 1341 998 3 792 31677 35 13 13 chr4 27228516 27230407 -128399713 - L1Md_T LINE L1 0 6582 4737 3 792 237 33 0 0 chr4 27230407 27230437 -128399683 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 792 31677 36 3 14 chr4 27230437 27233200 -128396920 - L1Md_T LINE L1 -1147 4736 1964 3 792 1525 219 11 29 chr4 27233206 27233554 -128396566 - Lx2 LINE L1 -764 6233 5892 3 792 2598 141 12 0 chr4 27233553 27234004 -128396116 + L1M4c LINE L1 2002 2492 -3892 3 792 23 33 0 0 chr4 27234027 27234057 -128396063 + AT_rich Low_complexity Low_complexity 1 30 0 3 792 22 35 0 0 chr4 27235155 27235184 -128394936 + AT_rich Low_complexity Low_complexity 1 29 0 3 792 887 351 26 32 chr4 27235248 27235743 -128394377 + Lx8 LINE L1 6085 6576 -897 3 792 676 294 12 21 chr4 27235768 27236008 -128394112 + Lx7 LINE L1 6754 6991 -705 3 792 10855 73 6 1 chr4 27236004 27237862 -128392258 + L1Md_F2 LINE L1 4459 6325 -257 3 792 302 107 18 0 chr4 27237937 27237993 -128392127 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 3 792 8203 122 35 11 chr4 27237993 27239499 -128390621 - Lx3A LINE L1 -2 6979 5447 3 792 5266 105 42 65 chr4 27239495 27240464 -128389656 + L1_Mur1 LINE L1 3756 4702 -1184 3 792 25 0 0 0 chr4 27240464 27240489 -128389631 + AT_rich Low_complexity Low_complexity 1 25 0 3 792 603 154 0 0 chr4 27240568 27240685 -128389435 + CT-rich Low_complexity Low_complexity 2 118 0 3 792 300 102 0 0 chr4 27240687 27240736 -128389384 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 792 1010 261 43 19 chr4 27240817 27241075 -128389045 - RMER20B LTR ERVK -362 265 2 3 792 264 314 9 0 chr4 27241179 27241284 -128388836 - Lx6 LINE L1 -30 7430 7325 3 792 590 105 21 0 chr4 27241284 27241379 -128388741 + (TTTTC)n Simple_repeat Simple_repeat 1 97 0 3 792 271 222 0 16 chr4 27241459 27241523 -128388597 + Lx6 LINE L1 7197 7259 -201 3 792 955 236 17 4 chr4 27242366 27242604 -128387516 - Lx2B LINE L1 0 7000 6760 3 792 553 188 71 0 chr4 27242609 27242721 -128387399 - Lx2B LINE L1 -393 6607 6488 3 792 15182 150 7 50 chr4 27242813 27245331 -128384789 - L1_Mus2 LINE L1 0 6566 4308 3 792 390 21 0 0 chr4 27245331 27245378 -128384742 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 792 15182 189 10 73 chr4 27245378 27247224 -128382896 - L1_Mus2 LINE L1 -1576 4307 2447 3 792 339 243 86 43 chr4 27247224 27247340 -128382780 - RMER15 LTR ERVL -362 213 93 3 792 1608 252 62 8 chr4 27247343 27247839 -128382281 - Lx2B LINE L1 -2 6998 6476 3 792 307 291 229 33 chr4 27247958 27248111 -128382009 - B3 SINE B2 -27 189 7 3 792 428 323 0 0 chr4 27248287 27248417 -128381703 + Lx6 LINE L1 6912 7041 -419 3 792 188 296 74 50 chr4 27248827 27248948 -128381172 + L2 LINE L2 2234 2357 -1062 3 792 3436 133 20 0 chr4 27250869 27251411 -128378709 + L1_Mus4 LINE L1 6079 6631 -5 3 792 306 314 69 0 chr4 27251880 27252037 -128378083 - Lx7 LINE L1 -1297 5761 5592 3 792 24 32 0 0 chr4 27252038 27252069 -128378051 + AT_rich Low_complexity Low_complexity 1 31 0 3 792 241 350 44 18 chr4 27252111 27252338 -128377782 - L1M5 LINE L1 -657 5583 5351 3 792 501 47 0 0 chr4 27252394 27252458 -128377662 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 792 606 28 0 0 chr4 27252461 27252533 -128377587 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 792 430 330 9 0 chr4 27252559 27252674 -128377446 - B1F2 SINE Alu -26 123 8 3 792 883 331 116 17 chr4 27252700 27252772 -128377348 + Lx8 LINE L1 6872 6949 -524 3 792 669 123 0 0 chr4 27252772 27252878 -128377242 + (CATA)n Simple_repeat Simple_repeat 2 107 0 3 792 883 331 116 17 chr4 27252878 27253342 -128376778 + Lx8 LINE L1 6950 7461 -12 3 792 512 364 0 12 chr4 27253487 27253651 -128376469 + RSINE1 SINE B4 4 165 0 3 792 36 0 0 0 chr4 27253870 27253906 -128376214 + AT_rich Low_complexity Low_complexity 1 36 0 3 792 362 353 147 12 chr4 27254179 27254431 -128375689 - MER2 DNA MER2_type -58 287 2 3 792 2718 245 47 67 chr4 27254836 27256086 -128374034 + L1_Mur2 LINE L1 943 2233 -3647 3 792 319 162 200 0 chr4 27256088 27256168 -128373952 + RLTR25B LTR ERVK 590 685 -418 3 792 399 173 49 0 chr4 27256175 27256256 -128373864 + RLTR25B LTR ERVK 665 749 -279 3 792 8020 51 4 0 chr4 27256290 27257277 -128372843 - L1Md_F2 LINE L1 -1 6581 5591 3 792 3061 70 3 0 chr4 27257277 27257661 -128372459 - IAPEY_LTR LTR ERVK 0 385 1 3 792 5790 57 1 9 chr4 27257661 27258109 -128372011 - L1Md_F2 LINE L1 -288 5595 5149 3 792 2351 209 82 0 chr4 27258263 27258727 -128371393 + Lx3C LINE L1 6473 6974 -2 4 792 741 251 157 4 chr4 27258825 27258864 -128371256 + RLTR25B LTR ERVK 757 806 -222 3 792 402 39 0 0 chr4 27258864 27258916 -128371204 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 792 741 251 157 4 chr4 27258916 27259112 -128371008 + RLTR25B LTR ERVK 807 1028 0 3 792 246 333 58 0 chr4 27259347 27259434 -128370686 + MIR SINE MIR 58 149 -59 4 792 2399 277 40 52 chr4 27259442 27260740 -128369380 + Lx5 LINE L1 5311 6596 -454 4 792 297 0 0 0 chr4 27260740 27260773 -128369347 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 792 2218 306 58 85 chr4 27260773 27261023 -128369097 + Lx5 LINE L1 6597 6832 -218 4 792 2165 210 12 2 chr4 27261057 27261472 -128368648 - Lx4B LINE L1 -267 6791 6373 4 792 377 20 20 0 chr4 27262914 27262964 -128367156 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 4 793 21 36 0 0 chr4 27263056 27263084 -128367036 + AT_rich Low_complexity Low_complexity 1 28 0 4 793 371 226 8 0 chr4 27263260 27263393 -128366727 + (TA)n Simple_repeat Simple_repeat 1 134 0 4 793 181 175 100 0 chr4 27263453 27263493 -128366627 + L4 LINE RTE 1677 1720 -309 4 793 7753 55 8 4 chr4 27263715 27264760 -128365360 - L1Md_F2 LINE L1 -2 6580 5532 4 793 213 269 86 81 chr4 27264777 27264951 -128365169 - L3b LINE CR1 -233 249 75 4 793 735 146 0 23 chr4 27265097 27265230 -128364890 - MusHAL1 LINE L1 -617 2095 1966 4 793 6440 209 17 67 chr4 27265233 27266164 -128363956 + Lx2B LINE L1 4216 5152 -734 4 793 727 97 0 69 chr4 27266164 27266308 -128363812 + L1Md_F2 LINE L1 6449 6582 0 4 793 6440 199 59 64 chr4 27266308 27268231 -128361889 + Lx2B LINE L1 5153 6986 -14 4 793 689 365 58 35 chr4 27268306 27269095 -128361025 + Lx8 LINE L1 6520 7326 -147 4 793 1117 84 0 0 chr4 27269268 27269411 -128360709 - B1_Mm SINE Alu -2 145 3 4 793 26 0 0 0 chr4 27269474 27269500 -128360620 + AT_rich Low_complexity Low_complexity 1 26 0 4 793 23 54 0 0 chr4 27269723 27269760 -128360360 + AT_rich Low_complexity Low_complexity 1 37 0 4 793 21 57 0 0 chr4 27270059 27270094 -128360026 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 28 48 0 0 chr4 27270261 27270303 -128359817 + AT_rich Low_complexity Low_complexity 1 42 0 4 793 25 51 0 0 chr4 27270442 27270481 -128359639 + AT_rich Low_complexity Low_complexity 1 39 0 4 793 33 0 0 0 chr4 27270800 27270833 -128359287 + AT_rich Low_complexity Low_complexity 1 33 0 4 793 247 290 106 53 chr4 27272962 27273020 -128357100 + MTC LTR MaLR 5 71 -350 4 793 487 0 16 16 chr4 27273020 27273084 -128357036 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 793 247 290 106 53 chr4 27273084 27273138 -128356982 + MTC LTR MaLR 72 122 -299 4 793 2456 251 73 7 chr4 27273145 27273888 -128356232 - Lx9 LINE L1 -6 7638 6847 4 793 724 196 74 0 chr4 27274427 27274575 -128355545 - Lx9 LINE L1 -813 6831 6673 4 793 1015 271 19 4 chr4 27274573 27274829 -128355291 - Lx9 LINE L1 -1079 6565 6306 4 793 201 74 0 0 chr4 27274831 27274858 -128355262 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4 793 544 283 16 16 chr4 27275041 27275228 -128354892 - Lx9 LINE L1 -1667 5977 5791 4 793 225 274 82 0 chr4 27275327 27275400 -128354720 - Lx7 LINE L1 -85 7611 7533 4 793 420 271 126 6 chr4 27275958 27276140 -128353980 + L1_Mur3 LINE L1 895 1098 -6630 4 793 509 249 65 4 chr4 27276155 27276395 -128353725 + L1_Mur3 LINE L1 1153 1403 -4474 4 793 574 217 33 0 chr4 27276391 27276511 -128353609 - L1_Mur3 LINE L1 -888 4992 4869 4 793 1148 235 20 43 chr4 27276520 27276871 -128353249 - L1_Mur3 LINE L1 -1718 4162 3820 4 793 3843 122 25 0 chr4 27276872 27277440 -128352680 + MT2B2 LTR ERVL 1 582 -2 4 793 26 0 0 0 chr4 27277938 27277964 -128352156 + AT_rich Low_complexity Low_complexity 1 26 0 4 793 1155 371 42 21 chr4 27278689 27278841 -128351279 + Lx8 LINE L1 6154 6318 -1155 4 793 1810 240 58 67 chr4 27278841 27279457 -128350663 + RMER19C LTR ERVK 1 611 0 4 793 1155 371 42 21 chr4 27279457 27280214 -128349906 + Lx8 LINE L1 6319 7082 -391 4 793 450 0 0 0 chr4 27280214 27280264 -128349856 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 793 323 33 66 0 chr4 27280379 27280440 -128349680 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 4 793 507 17 0 0 chr4 27280458 27280518 -128349602 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 793 300 188 0 0 chr4 27280587 27280651 -128349469 + GA-rich Low_complexity Low_complexity 3 66 0 4 793 405 0 0 0 chr4 27281405 27281450 -128348670 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 793 336 48 0 0 chr4 27281450 27281491 -128348629 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 793 841 161 0 32 chr4 27281900 27282054 -128348066 + Lx4A LINE L1 395 543 -6543 4 793 10921 160 161 119 chr4 27282060 27282789 -128347331 + Lx4A LINE L1 2335 3055 -2822 4 793 267 31 0 0 chr4 27282789 27282821 -128347299 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 4 793 10921 160 161 119 chr4 27282821 27283840 -128346280 + Lx4A LINE L1 3056 4527 -1350 4 793 1672 139 68 101 chr4 27283840 27283944 -128346176 + ORR1A2 LTR MaLR 3 86 -241 4 793 2043 135 101 38 chr4 27283944 27284368 -128345752 + RLTR44E LTR ERVK 1 451 -1 4 793 1672 139 68 101 chr4 27284368 27284599 -128345521 + ORR1A2 LTR MaLR 87 327 0 4 793 10921 162 148 109 chr4 27284599 27286079 -128344041 + Lx4A LINE L1 4528 6054 -1004 4 793 3211 38 8 5 chr4 27286079 27286474 -128343646 + MTA_Mm LTR MaLR 1 396 0 4 793 5184 184 30 21 chr4 27286474 27287025 -128343095 + Lx4A LINE L1 6055 6607 -451 4 793 2669 162 82 28 chr4 27287023 27287562 -128342558 - Lx LINE L1 -7 6647 6080 4 793 29811 104 29 16 chr4 27287528 27292085 -128338035 + Lx3_Mus LINE L1 717 5366 -520 4 793 1059 103 0 0 chr4 27292085 27292230 -128337890 + B1_Mus1 SINE Alu 1 145 -3 4 793 229 26 0 50 chr4 27292234 27292274 -128337846 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 793 29811 99 25 47 chr4 27292274 27293073 -128337047 + Lx3_Mus LINE L1 5367 6100 -909 4 793 333 47 0 0 chr4 27293073 27293116 -128337004 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 793 8892 98 27 59 chr4 27293116 27294010 -128336110 + Lx3_Mus LINE L1 6101 7009 0 4 793 1131 95 0 0 chr4 27294487 27294634 -128335486 + B1_Mus2 SINE Alu 1 147 0 4 793 414 118 0 0 chr4 27294634 27294697 -128335423 + (A)n Simple_repeat Simple_repeat 1 63 0 4 793 15441 58 2 0 chr4 27295545 27298221 -128331899 - L1Md_F2 LINE L1 -12 6570 3890 4 793 959 289 74 19 chr4 27298225 27298536 -128331584 - Lx4B LINE L1 -2 7056 6729 4 793 1334 119 25 8 chr4 27298537 27298774 -128331346 - L1_Mus3 LINE L1 -1 6637 6397 4 793 5770 100 117 1 chr4 27298774 27299740 -128330380 - L1_Mus3 LINE L1 -30 6608 5532 4 793 2775 263 31 27 chr4 27299743 27300512 -128329608 - Lx5 LINE L1 -343 6707 5936 4 793 601 193 13 0 chr4 27300810 27300960 -128329160 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 793 27 49 0 0 chr4 27301135 27301176 -128328944 + AT_rich Low_complexity Low_complexity 1 41 0 4 793 240 271 98 0 chr4 27302173 27302306 -128327814 - L1MA4 LINE L1 -373 5927 5782 4 793 746 188 101 12 chr4 27302358 27302606 -128327514 - Lx9 LINE L1 -1 7643 7374 4 793 631 320 11 82 chr4 27302612 27302891 -128327229 + Lx9 LINE L1 7073 7331 -313 4 793 345 336 9 9 chr4 27303025 27303136 -128326984 - RSINE1 SINE B4 -40 125 15 4 793 413 315 0 0 chr4 27303173 27303265 -128326855 + B3A SINE B2 3 94 -104 4 793 1862 282 44 42 chr4 27304671 27305308 -128324812 + Lx6 LINE L1 6643 7280 -180 4 793 274 322 74 8 chr4 27305398 27305520 -128324600 + Lx7 LINE L1 7209 7338 -358 4 793 509 115 0 11 chr4 27305647 27305735 -128324385 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 793 383 266 152 38 chr4 27306200 27306384 -128323736 + MT2B LTR ERVL 1 205 -328 4 793 789 151 137 0 chr4 27306384 27306530 -128323590 + Lx3C LINE L1 6802 6967 -9 4 793 264 77 0 0 chr4 27306537 27306576 -128323544 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 793 2393 84 0 21 chr4 27306601 27306931 -128323189 - L1_Mur1 LINE L1 -47 5839 5517 4 793 7033 139 19 18 chr4 27306931 27308132 -128321988 + Lx3A LINE L1 5769 6971 -10 4 793 21 82 0 0 chr4 27308136 27308185 -128321935 + AT_rich Low_complexity Low_complexity 1 49 0 4 793 766 267 30 110 chr4 27308307 27308575 -128321545 + MT2B LTR ERVL 158 558 -43 4 793 387 41 0 0 chr4 27308575 27308624 -128321496 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 793 766 267 11 121 chr4 27308624 27308664 -128321456 + MT2B LTR ERVL 559 597 -4 4 793 8416 203 47 37 chr4 27308670 27310595 -128319525 + MERVL_2A-int LTR ERVL 3 1946 -3815 4 793 1458 184 4 0 chr4 27310611 27310872 -128319248 - L1_Mm LINE L1 -935 4948 4687 4 793 2026 210 30 0 chr4 27310877 27311281 -128318839 + MERVL_2A-int LTR ERVL 2263 2678 -3083 4 793 4368 68 0 5 chr4 27311281 27311854 -128318266 - L1_Mm LINE L1 -356 5527 4958 4 793 2915 78 0 0 chr4 27311841 27312223 -128317897 + L1_Mm LINE L1 4576 4957 -926 4 793 5491 242 77 5 chr4 27312223 27314282 -128315838 + MERVL_2A-int LTR ERVL 3079 5213 -272 4 793 427 257 48 35 chr4 27314294 27314439 -128315681 + MT2B LTR ERVL 391 537 -64 4 793 386 248 28 0 chr4 27314966 27315075 -128315045 + Lx9 LINE L1 6906 7017 -627 4 793 474 49 0 0 chr4 27315102 27315163 -128314957 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 793 477 0 0 0 chr4 27315437 27315490 -128314630 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 793 1920 123 3 3 chr4 27316078 27316372 -128313748 + L1_Mus4 LINE L1 6331 6624 -12 4 793 316 311 76 42 chr4 27316897 27317162 -128312958 - MLT1F1 LTR MaLR -255 314 22 4 793 22 35 0 0 chr4 27318419 27318448 -128311672 + AT_rich Low_complexity Low_complexity 1 29 0 4 793 1001 97 0 0 chr4 27319128 27319262 -128310858 + B1_Mm SINE Alu 1 134 -13 4 793 229 26 26 26 chr4 27319266 27319305 -128310815 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 793 369 283 117 0 chr4 27319511 27319631 -128310489 + ID_B1 SINE B4 87 220 -4 4 793 24 0 0 0 chr4 27319772 27319796 -128310324 + AT_rich Low_complexity Low_complexity 1 24 0 4 793 289 339 50 54 chr4 27320369 27320609 -128309511 + L3 LINE CR1 4103 4341 -148 4 793 285 290 19 43 chr4 27322434 27322596 -128307524 - L1M2 LINE L1 -686 5626 5469 4 793 498 317 41 83 chr4 27322577 27322800 -128307320 - Lx9 LINE L1 -1 7643 7439 4 793 405 0 0 0 chr4 27322800 27322845 -128307275 + (TATG)n Simple_repeat Simple_repeat 2 46 0 4 793 498 317 41 83 chr4 27322845 27323113 -128307007 - Lx9 LINE L1 -206 7438 7173 4 793 21 71 0 0 chr4 27323156 27323198 -128306922 + AT_rich Low_complexity Low_complexity 1 42 0 4 793 7496 94 19 2 chr4 27323201 27324864 -128305256 - L1_Mus1 LINE L1 -1 6566 4883 4 793 21 36 0 0 chr4 27324901 27324929 -128305191 + AT_rich Low_complexity Low_complexity 1 28 0 4 793 8410 108 26 13 chr4 27325440 27326711 -128303409 + Lx3_Mus LINE L1 5702 6988 -21 4 793 387 0 0 0 chr4 27326711 27326754 -128303366 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 793 242 29 29 0 chr4 27327657 27327692 -128302428 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 4 793 200 159 0 43 chr4 27327692 27327738 -128302382 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 4 793 754 194 14 7 chr4 27328564 27328709 -128301411 - B1_Mur4 SINE Alu -3 147 2 4 793 217 51 0 49 chr4 27328772 27328813 -128301307 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 793 444 19 0 0 chr4 27329190 27329243 -128300877 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 793 182 230 0 26 chr4 27329261 27329337 -128300783 + (CAGAGA)n Simple_repeat Simple_repeat 3 76 0 5 793 2843 62 0 24 chr4 27330257 27330639 -128299481 + L1_Mus1 LINE L1 6191 6563 -4 5 793 675 245 65 20 chr4 27330814 27331014 -128299106 + B3 SINE B2 2 210 -6 5 793 4304 87 60 8 chr4 27331098 27331733 -128298387 - L1Md_F2 LINE L1 0 6582 5915 5 793 1548 217 34 6 chr4 27332273 27332630 -128297490 - ORR1B2 LTR MaLR 0 367 1 5 793 234 0 0 0 chr4 27332691 27332717 -128297403 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 5 793 8837 107 30 19 chr4 27332804 27334171 -128295949 - Lx3_Mus LINE L1 0 7009 5628 5 793 8577 106 17 34 chr4 27334173 27335586 -128294534 + Lx4B LINE L1 4256 5641 -1417 5 793 1076 79 0 0 chr4 27335621 27335760 -128294360 + B1_Mus1 SINE Alu 1 139 -9 5 793 234 0 0 0 chr4 27335760 27335786 -128294334 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 793 200 185 37 0 chr4 27335787 27335841 -128294279 + A-rich Low_complexity Low_complexity 5 60 0 5 793 22 35 0 0 chr4 27336167 27336196 -128293924 + AT_rich Low_complexity Low_complexity 1 29 0 5 793 488 100 12 0 chr4 27336621 27336701 -128293419 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 793 1817 115 28 19 chr4 27337199 27337517 -128292603 - RLTRETN_Mm LTR ERVK 0 322 2 5 793 17645 152 27 19 chr4 27337518 27344327 -128285793 - ETnERV2-int LTR ERVK -282 7124 1 5 793 1683 142 18 57 chr4 27344327 27344406 -128285714 - RLTRETN_Mm LTR ERVK 0 322 256 5 793 799 34 0 33 chr4 27344406 27344528 -128285592 + L1Md_A LINE L1 6465 6582 0 5 793 1683 142 18 57 chr4 27344528 27344783 -128285337 - RLTRETN_Mm LTR ERVK -67 255 1 5 793 183 42 0 0 chr4 27344898 27344922 -128285198 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 793 1027 72 0 42 chr4 27344922 27345066 -128285054 - B1_Mus1 SINE Alu -9 139 2 5 793 21 0 0 0 chr4 27345182 27345203 -128284917 + AT_rich Low_complexity Low_complexity 1 21 0 5 793 233 318 24 0 chr4 27346294 27346379 -128283741 - MamRep137 DNA TcMar? -185 259 173 5 793 23 54 0 0 chr4 27347060 27347097 -128283023 + AT_rich Low_complexity Low_complexity 1 37 0 5 793 340 320 92 27 chr4 27348263 27348416 -128281704 + B3 SINE B2 5 165 -51 5 793 498 17 0 0 chr4 27348416 27348475 -128281645 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 793 305 330 80 43 chr4 27348475 27348508 -128281612 + B3A SINE B2 165 198 0 5 793 21 0 0 0 chr4 27348593 27348614 -128281506 + AT_rich Low_complexity Low_complexity 1 21 0 5 793 420 316 19 32 chr4 27348942 27349096 -128281024 - RSINE1 SINE B4 -3 162 11 5 793 305 365 95 20 chr4 27349191 27349339 -128280781 - B3 SINE B2 -30 186 28 5 793 531 0 0 0 chr4 27349339 27349398 -128280722 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 793 1247 102 11 0 chr4 27349400 27349586 -128280534 - Lx LINE L1 -16 6638 6451 5 793 1228 247 82 18 chr4 27349727 27350007 -128280113 - 7SLRNA srpRNA srpRNA -6 308 11 5 793 21 0 0 0 chr4 27350059 27350080 -128280040 + AT_rich Low_complexity Low_complexity 1 21 0 5 793 306 98 0 0 chr4 27350285 27350336 -128279784 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 5 793 521 298 20 62 chr4 27350412 27350631 -128279489 - MTD LTR MaLR -108 311 88 5 793 2535 172 24 50 chr4 27350715 27351290 -128278830 + RLTR31_Mm LTR ERVK 2 561 0 5 793 246 62 0 0 chr4 27351395 27351427 -128278693 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 793 517 164 35 76 chr4 27351838 27351983 -128278137 + Lx9 LINE L1 7379 7517 -127 5 793 237 244 0 0 chr4 27351983 27352028 -128278092 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 5 793 523 263 126 28 chr4 27352141 27352356 -128277764 + Lx8 LINE L1 6922 7157 -316 5 793 278 87 22 0 chr4 27352360 27352406 -128277714 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 5 793 274 170 18 107 chr4 27352435 27352547 -128277573 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 0 5 793 348 316 42 25 chr4 27352579 27352699 -128277421 + Lx8 LINE L1 7200 7321 -152 5 793 889 311 67 24 chr4 27353044 27353419 -128276701 - MER70B LTR ERVL -102 476 86 5 793 22 70 0 0 chr4 27355715 27355758 -128274362 + AT_rich Low_complexity Low_complexity 1 43 0 5 793 216 0 0 0 chr4 27355894 27355918 -128274202 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 793 22 0 0 0 chr4 27355926 27355948 -128274172 + AT_rich Low_complexity Low_complexity 1 22 0 5 793 30 69 0 0 chr4 27356395 27356453 -128273667 + AT_rich Low_complexity Low_complexity 1 58 0 5 793 219 114 0 0 chr4 27357197 27357232 -128272888 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 793 327 113 0 0 chr4 27357234 27357287 -128272833 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 793 309 26 0 0 chr4 27357287 27357324 -128272796 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 793 321 26 0 0 chr4 27357333 27357371 -128272749 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 793 324 0 0 0 chr4 27357371 27357406 -128272714 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 793 407 69 11 54 chr4 27357571 27357663 -128272457 + (TTTTTG)n Simple_repeat Simple_repeat 2 89 0 5 793 1020 85 43 0 chr4 27357667 27357808 -128272312 - B1_Mus1 SINE Alu -1 147 1 5 793 1453 325 38 35 chr4 27357817 27358468 -128271652 - Lx9 LINE L1 -453 7191 6539 5 793 316 224 25 14 chr4 27358548 27358648 -128271472 - B1_Mur3 SINE Alu 0 149 42 5 793 529 212 76 8 chr4 27358815 27358934 -128271186 + B1_Mur3 SINE Alu 23 149 0 5 793 939 256 92 38 chr4 27359438 27359755 -128270365 + Lx6 LINE L1 6518 6851 -609 5 793 976 296 39 65 chr4 27359766 27359976 -128270144 + Lx6 LINE L1 6943 7146 -314 5 793 330 45 0 0 chr4 27359976 27360020 -128270100 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 793 976 296 39 65 chr4 27360020 27360243 -128269877 + Lx6 LINE L1 7147 7364 -96 5 793 210 196 20 0 chr4 27360264 27360315 -128269805 + A-rich Low_complexity Low_complexity 3 54 0 5 793 33 56 0 0 chr4 27361473 27361527 -128268593 + AT_rich Low_complexity Low_complexity 1 54 0 5 793 29 47 0 0 chr4 27361631 27361674 -128268446 + AT_rich Low_complexity Low_complexity 1 43 0 5 793 706 302 28 69 chr4 27362172 27362460 -128267660 - MTE2b LTR MaLR -103 276 1 5 793 914 200 93 53 chr4 27363511 27363858 -128266262 + RLTRETN_Mm LTR ERVK 1 403 0 5 793 3806 69 27 10 chr4 27364044 27364558 -128265562 - L1_Mus1 LINE L1 -1 6566 6044 5 793 4537 98 5 0 chr4 27364558 27365383 -128264737 + L1_Mus1 LINE L1 5206 6035 -532 5 793 25 51 0 0 chr4 27365973 27366012 -128264108 + AT_rich Low_complexity Low_complexity 1 39 0 5 793 30 97 0 0 chr4 27366171 27366264 -128263856 + AT_rich Low_complexity Low_complexity 1 93 0 5 793 46 45 0 0 chr4 27366690 27366757 -128263363 + AT_rich Low_complexity Low_complexity 1 67 0 5 793 372 194 81 0 chr4 27366871 27366968 -128263152 + Lx9 LINE L1 5118 5238 -642 5 793 651 176 0 0 chr4 27366968 27367093 -128263027 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 793 1904 256 51 43 chr4 27367133 27367927 -128262193 + Lx9 LINE L1 5266 6102 -1542 5 793 2303 287 63 19 chr4 27368006 27368805 -128261315 + Lx9 LINE L1 6320 7153 -491 5 793 334 317 0 0 chr4 27369300 27369401 -128260719 - Lx6 LINE L1 -726 6734 6634 5 793 1209 332 57 41 chr4 27369404 27369984 -128260136 + Lx6 LINE L1 6457 7434 -26 5 793 21 36 0 0 chr4 27370408 27370436 -128259684 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 21 36 0 0 chr4 27370550 27370578 -128259542 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 7792 73 1 0 chr4 27371201 27372424 -128257696 - L1_Mus1 LINE L1 0 6567 5383 5 793 4525 122 34 0 chr4 27372424 27373134 -128256986 + L1_Mm LINE L1 4224 4957 -926 5 793 181 57 0 54 chr4 27373384 27373421 -128256699 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 5 793 227 389 64 18 chr4 27373455 27373675 -128256445 - Lx8 LINE L1 -179 7294 7065 5 793 454 294 51 60 chr4 27373826 27374043 -128256077 - Lx7 LINE L1 -1874 5822 5608 5 793 797 191 0 0 chr4 27374046 27374182 -128255938 + ORR1C1 LTR MaLR 243 378 0 5 793 239 350 100 70 chr4 27374679 27374909 -128255211 + B4A SINE B4 43 279 -13 5 793 420 55 0 0 chr4 27374929 27374984 -128255136 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 793 1239 167 47 0 chr4 27375146 27375380 -128254740 - RMER6C LTR ERVK 0 690 446 5 793 2870 233 115 110 chr4 27375382 27376314 -128253806 + RMER12 LTR ERVK 1 836 -486 5 793 383 83 17 0 chr4 27376314 27376374 -128253746 + (TATG)n Simple_repeat Simple_repeat 4 64 0 5 793 2870 233 115 110 chr4 27376374 27376624 -128253496 + RMER12 LTR ERVK 837 1188 -134 5 793 293 194 28 56 chr4 27376759 27376830 -128253290 + RMER12 LTR ERVK 1336 1404 0 5 793 657 265 62 70 chr4 27376831 27377184 -128252936 - RMER6C LTR ERVK -224 466 111 5 793 410 247 36 54 chr4 27377184 27377351 -128252769 - RNLTR23 LTR ERVK 0 642 479 5 793 490 101 41 36 chr4 27377605 27377714 -128252406 - RMER6C LTR ERVK -618 102 1 5 793 544 340 29 41 chr4 27377714 27377951 -128252169 + MTEb LTR MaLR 146 379 0 5 793 1377 314 3 0 chr4 27378022 27378410 -128251710 - RMER1C Other Other -368 974 586 5 793 1265 243 80 18 chr4 27378789 27379179 -128250941 + Lx6 LINE L1 5759 6172 -1288 5 793 258 105 0 0 chr4 27379226 27379264 -128250856 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 793 29 28 0 0 chr4 27379548 27379584 -128250536 + AT_rich Low_complexity Low_complexity 1 36 0 5 793 24 67 0 0 chr4 27380355 27380400 -128249720 + AT_rich Low_complexity Low_complexity 1 45 0 5 793 232 246 13 115 chr4 27380678 27380756 -128249364 - LTR45 LTR ERV1 -192 333 264 5 793 571 105 0 34 chr4 27380832 27380921 -128249199 - Lx2A1 LINE L1 -1035 5973 5888 5 793 23 0 0 0 chr4 27381314 27381337 -128248783 + AT_rich Low_complexity Low_complexity 1 23 0 5 793 3260 166 42 16 chr4 27382018 27382632 -128247488 - Lx4A LINE L1 0 7058 6429 5 793 2272 185 70 11 chr4 27382634 27383094 -128247026 + Lx4A LINE L1 5915 6401 -657 5 793 609 139 0 10 chr4 27383102 27383130 -128246990 - BC1_Mm scRNA scRNA -48 104 77 5 793 294 29 0 0 chr4 27383130 27383165 -128246955 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 793 609 139 0 10 chr4 27383165 27383238 -128246882 - BC1_Mm scRNA scRNA -76 76 4 5 793 1856 52 0 0 chr4 27383283 27383514 -128246606 - L1Md_T LINE L1 0 6582 6352 5 793 198 0 0 0 chr4 27383558 27383580 -128246540 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 793 213 39 0 0 chr4 27383580 27383605 -128246515 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 793 1797 307 51 53 chr4 27383605 27384986 -128245134 - L1_Mur3 LINE L1 -2966 2914 1537 5 793 381 22 0 0 chr4 27387115 27387161 -128242959 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 793 200 280 0 0 chr4 27387222 27387272 -128242848 + GA-rich Low_complexity Low_complexity 3 52 0 6 793 432 0 0 0 chr4 27387275 27387323 -128242797 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 793 247 248 79 16 chr4 27387955 27388082 -128242038 + L1MA5 LINE L1 5803 5937 -363 6 793 257 345 103 60 chr4 27388407 27388592 -128241528 + B4A SINE B4 22 214 -78 6 793 299 378 16 8 chr4 27388758 27388886 -128241234 + RSINE1 SINE B4 2 130 -35 6 793 290 115 19 0 chr4 27388920 27388972 -128241148 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 793 198 0 0 0 chr4 27388972 27388993 -128241127 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 6 793 515 329 62 39 chr4 27389008 27389267 -128240853 + RMER15 LTR ERVL 263 527 -48 6 793 1019 78 14 0 chr4 27389482 27389623 -128240497 - B1_Mm SINE Alu 0 147 5 6 793 301 187 0 26 chr4 27390553 27390630 -128239490 + CT-rich Low_complexity Low_complexity 3 77 0 6 793 21 0 0 0 chr4 27390947 27390968 -128239152 + AT_rich Low_complexity Low_complexity 1 21 0 6 793 24 32 0 0 chr4 27391666 27391697 -128238423 + AT_rich Low_complexity Low_complexity 1 31 0 6 793 1149 143 10 10 chr4 27391991 27392196 -128237924 + L1_Mus3 LINE L1 6434 6638 0 6 793 367 354 9 0 chr4 27392248 27392361 -128237759 - MLT1A0 LTR MaLR 0 365 252 6 793 1761 211 101 58 chr4 27392506 27393009 -128237111 - RLTR20B3 LTR ERVK -52 525 1 6 793 497 339 66 30 chr4 27393430 27393764 -128236356 + MLT2C1 LTR ERVL 18 363 -34 6 794 264 289 10 0 chr4 27394087 27394184 -128235936 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 794 180 0 0 0 chr4 27394511 27394531 -128235589 + (TTC)n Simple_repeat Simple_repeat 2 21 0 6 794 212 143 24 0 chr4 27394529 27394571 -128235549 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 794 252 333 0 30 chr4 27394602 27394701 -128235419 + PB1 SINE Alu 13 108 -19 6 794 183 280 0 20 chr4 27394869 27394920 -128235200 + L3 LINE CR1 3734 3783 -706 6 794 289 306 28 0 chr4 27395847 27395919 -128234201 - ID4_ SINE ID -2 81 8 6 794 430 335 156 25 chr4 27395947 27396190 -128233930 + Lx8 LINE L1 6250 6524 -949 6 794 331 330 93 33 chr4 27396231 27396532 -128233588 + Lx8 LINE L1 6996 7321 -152 6 794 203 147 0 0 chr4 27396586 27396620 -128233500 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 794 339 25 0 0 chr4 27396777 27396817 -128233303 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 794 216 114 68 0 chr4 27397169 27397213 -128232907 + A-rich Low_complexity Low_complexity 2 48 0 6 794 1140 209 82 169 chr4 27399368 27399829 -128230291 + MTC LTR MaLR 1 421 0 6 794 2135 99 47 18 chr4 27400026 27400365 -128229755 - L1Md_F2 LINE L1 -2 6580 6232 6 794 2414 64 2 224 chr4 27400365 27400866 -128229254 - RLTR10 LTR ERVK 0 390 1 6 794 5850 38 28 11 chr4 27400866 27401609 -128228511 - RLTR10-int LTR ERVK -1 1986 1231 6 794 3243 72 14 2 chr4 27401607 27402089 -128228031 - RLTR10-int LTR ERVK -1385 602 41 6 794 2294 74 26 194 chr4 27402099 27402568 -128227552 - RLTR10 LTR ERVK 0 390 1 6 794 3511 82 13 0 chr4 27402568 27403042 -128227078 - L1Md_F2 LINE L1 -345 6237 5758 6 794 8168 68 1 2 chr4 27403035 27404101 -128226019 + L1Md_F2 LINE L1 4690 5754 -129 6 794 536 309 7 28 chr4 27404434 27404577 -128225543 - B1_Mur1 SINE Alu -1 148 9 6 794 22 70 0 0 chr4 27404596 27404639 -128225481 + AT_rich Low_complexity Low_complexity 1 43 0 6 794 190 100 39 20 chr4 27405979 27406030 -128224090 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 794 359 306 129 32 chr4 27406661 27406941 -128223179 + L1MEf LINE L1 710 1016 -5184 6 794 217 321 152 51 chr4 27408230 27408368 -128221752 + B3A SINE B2 37 188 -10 6 794 22 35 0 0 chr4 27409075 27409104 -128221016 + AT_rich Low_complexity Low_complexity 1 29 0 6 794 473 335 18 58 chr4 27409966 27410137 -128219983 + RSINE1 SINE B4 2 165 0 6 794 184 337 162 22 chr4 27410212 27410391 -128219729 + MIR SINE MIR 27 230 -32 6 794 510 96 0 0 chr4 27410536 27410609 -128219511 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 6 794 370 355 82 57 chr4 27410904 27411072 -128219048 + ORR1E LTR MaLR 32 205 -154 6 794 181 0 69 0 chr4 27411072 27411101 -128219019 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 794 370 355 82 57 chr4 27411101 27411213 -128218907 + ORR1E LTR MaLR 206 318 -41 6 794 345 344 119 22 chr4 27411214 27411482 -128218638 + L1MEg LINE L1 898 1191 -4893 6 794 1173 91 28 11 chr4 27412082 27412260 -128217860 + B2_Mm2 SINE B2 3 183 -12 6 794 22 56 0 0 chr4 27412371 27412407 -128217713 + AT_rich Low_complexity Low_complexity 1 36 0 6 794 189 0 0 0 chr4 27412890 27412911 -128217209 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 794 22 0 0 0 chr4 27412948 27412970 -128217150 + AT_rich Low_complexity Low_complexity 1 22 0 6 794 5931 113 19 17 chr4 27414462 27415473 -128214647 - MusHAL1 LINE L1 -1494 1218 207 6 794 4994 84 9 6 chr4 27415473 27416156 -128213964 + L1_Mus3 LINE L1 5946 6630 -8 6 794 5931 113 19 17 chr4 27416156 27416170 -128213950 - MusHAL1 LINE L1 -2506 206 191 6 794 1044 211 110 125 chr4 27416460 27416980 -128213140 - RMER6C LTR ERVK 0 690 116 6 794 1476 239 63 15 chr4 27417188 27417587 -128212533 + RMER20B LTR ERVK 1 418 -209 6 794 675 395 25 11 chr4 27417876 27418155 -128211965 + B4A SINE B4 10 292 0 6 794 180 388 0 0 chr4 27418812 27418892 -128211228 - MIRb SINE MIR -77 191 112 6 794 1947 63 0 8 chr4 27420359 27420615 -128209505 - L1_Mus1 LINE L1 0 6567 6314 6 794 1024 236 61 128 chr4 27421227 27421317 -128208803 - Lx7 LINE L1 -16 7680 7575 6 794 222 37 0 0 chr4 27421317 27421344 -128208776 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 794 378 0 0 0 chr4 27421344 27421385 -128208735 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 794 1024 236 61 128 chr4 27421385 27421803 -128208317 - Lx7 LINE L1 -122 7574 7206 6 794 243 88 0 0 chr4 27421803 27421837 -128208283 + (T)n Simple_repeat Simple_repeat 1 34 0 6 794 488 194 8 0 chr4 27422082 27422216 -128207904 + (TA)n Simple_repeat Simple_repeat 1 135 0 6 794 258 105 0 0 chr4 27422256 27422294 -128207826 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 794 251 284 27 18 chr4 27426586 27426697 -128203423 + CT-rich Low_complexity Low_complexity 3 114 0 6 794 21 71 0 0 chr4 27426839 27426881 -128203239 + AT_rich Low_complexity Low_complexity 1 42 0 6 794 847 68 60 8 chr4 27426881 27427015 -128203105 - L1_Mus1 LINE L1 0 6567 6427 6 794 27 49 0 0 chr4 27427117 27427158 -128202962 + AT_rich Low_complexity Low_complexity 1 41 0 6 794 189 0 0 0 chr4 27427758 27427779 -128202341 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 794 348 336 53 69 chr4 27428361 27428607 -128201513 + MLT-int LTR MaLR 33 274 -1461 6 794 304 341 62 38 chr4 27428819 27429188 -128200932 - L1MA6 LINE L1 -190 6110 5733 6 794 188 67 33 0 chr4 27429296 27429326 -128200794 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 6 794 425 220 69 20 chr4 27429811 27429913 -128200207 - B1_Mur4 SINE Alu -1 149 43 6 794 316 237 0 0 chr4 27429977 27430036 -128200084 - PB1D9 SINE Alu -61 59 1 6 794 2774 196 50 14 chr4 27430232 27430807 -128199313 + Lx2B LINE L1 6402 6997 -3 6 794 306 303 120 45 chr4 27430947 27431189 -128198931 + Kanga1d DNA Tc2 321 580 -29 6 794 378 259 0 17 chr4 27431297 27431546 -128198574 + (TG)n Simple_repeat Simple_repeat 1 244 0 6 794 324 0 0 0 chr4 27433808 27433844 -128196276 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 794 203 54 26 51 chr4 27435520 27435559 -128194561 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 6 794 6434 253 87 20 chr4 27437157 27438443 -128191677 + Lx7 LINE L1 64 1419 -4461 6 794 1543 52 0 10 chr4 27438443 27438638 -128191482 + B2_Mm1a SINE B2 1 193 0 6 794 6434 230 114 43 chr4 27438638 27438886 -128191234 + Lx7 LINE L1 1420 1711 -4169 6 794 1076 65 7 0 chr4 27438886 27439040 -128191080 + (GAAA)n Simple_repeat Simple_repeat 3 157 0 6 794 6434 230 114 43 chr4 27439040 27439375 -128190745 + Lx7 LINE L1 1712 2074 -3806 6 794 348 43 0 0 chr4 27439375 27439421 -128190699 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 794 6434 230 114 43 chr4 27439421 27441058 -128189062 + Lx7 LINE L1 2075 3821 -2059 6 794 1456 264 52 23 chr4 27441066 27441454 -128188666 + Lx5 LINE L1 6652 7050 0 6 794 2573 177 31 11 chr4 27441470 27442024 -128188096 + Lx7 LINE L1 3807 4371 -1509 6 794 2657 189 48 20 chr4 27442067 27442627 -128187493 + RLTR20B3 LTR ERVK 2 577 0 6 794 2161 227 15 50 chr4 27442627 27443244 -128186876 + Lx7 LINE L1 4384 4978 -902 6 794 4221 92 25 10 chr4 27443244 27443856 -128186264 + L1_Mus3 LINE L1 6018 6638 0 6 794 2025 226 6 48 chr4 27443856 27444265 -128185855 + Lx7 LINE L1 5379 5777 -103 6 794 1619 91 60 9 chr4 27444265 27444497 -128185623 - L1Md_F2 LINE L1 -16 6566 6323 6 794 2025 265 47 41 chr4 27444497 27445012 -128185108 + Lx7 LINE L1 5778 6320 -1376 6 794 255 278 0 14 chr4 27445044 27445117 -128185003 + Lx7 LINE L1 6485 6556 -904 6 794 276 315 100 11 chr4 27445126 27445216 -128184904 - PB1D9 SINE Alu -22 98 1 6 794 32 0 0 0 chr4 27445320 27445352 -128184768 + AT_rich Low_complexity Low_complexity 1 32 0 6 794 437 248 45 9 chr4 27445481 27445591 -128184529 - Lx8 LINE L1 -465 7008 6895 6 794 30 0 0 0 chr4 27445701 27445731 -128184389 + AT_rich Low_complexity Low_complexity 1 30 0 6 794 1138 98 67 0 chr4 27446470 27446663 -128183457 + Lx3_Mus LINE L1 6785 6990 -19 6 794 192 40 0 0 chr4 27446707 27446732 -128183388 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 794 1071 105 5 112 chr4 27447160 27447374 -128182746 - L1_Mus2 LINE L1 -2 6564 6374 6 794 875 308 53 81 chr4 27448786 27449217 -128180903 - MTD LTR MaLR 0 419 1 6 794 455 45 15 0 chr4 27449599 27449665 -128180455 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 794 244 366 103 0 chr4 27449665 27449840 -128180280 - Lx9 LINE L1 -180 7464 7272 6 794 2540 242 60 17 chr4 27451012 27451764 -128178356 - Lx9 LINE L1 -24 7620 6837 6 794 24 77 0 0 chr4 27452314 27452366 -128177754 + AT_rich Low_complexity Low_complexity 1 52 0 6 794 465 172 0 0 chr4 27452722 27452815 -128177305 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 794 29 0 0 0 chr4 27453591 27453620 -128176500 + AT_rich Low_complexity Low_complexity 1 29 0 6 794 232 197 29 57 chr4 27455918 27455988 -128174132 + Charlie2b DNA MER1_type 108 175 -2607 6 794 229 117 67 0 chr4 27456212 27456224 -128173896 + (TA)n Simple_repeat Simple_repeat 1 12 0 6 794 207 0 0 0 chr4 27456224 27456247 -128173873 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 794 229 117 67 0 chr4 27456247 27456294 -128173826 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 794 247 384 29 29 chr4 27458284 27458488 -128171632 + Cheshire DNA MER1_type 110 313 -2107 7 794 5353 69 12 1 chr4 27459339 27460064 -128170056 + L1Md_F2 LINE L1 5849 6581 -1 7 794 1211 41 0 0 chr4 27460689 27460836 -128169284 + B1_Mm SINE Alu 1 147 0 7 794 189 94 0 0 chr4 27460836 27460868 -128169252 + (A)n Simple_repeat Simple_repeat 1 32 0 7 794 23 33 0 0 chr4 27461002 27461032 -128169088 + AT_rich Low_complexity Low_complexity 1 30 0 7 794 541 242 70 37 chr4 27461067 27461347 -128168773 + ORR1A4 LTR MaLR 1 329 0 7 794 1636 60 5 0 chr4 27461386 27461602 -128168518 - L1_Mm LINE L1 -526 5357 5141 7 794 7683 42 0 1 chr4 27461604 27462536 -128167584 + L1Md_F2 LINE L1 5640 6570 -12 7 794 3246 46 5 0 chr4 27462929 27463323 -128166797 - MTA_Mm LTR MaLR 0 396 1 7 794 31 58 0 0 chr4 27463983 27464035 -128166085 + AT_rich Low_complexity Low_complexity 1 52 0 7 794 25 0 0 0 chr4 27464834 27464859 -128165261 + AT_rich Low_complexity Low_complexity 1 25 0 7 794 7783 174 12 13 chr4 27464916 27467448 -128162672 + Lx2B LINE L1 4452 6977 -23 7 794 363 96 0 0 chr4 27467452 27467504 -128162616 + (ATG)n Simple_repeat Simple_repeat 3 54 0 7 794 243 0 0 0 chr4 27468312 27468339 -128161781 + (A)n Simple_repeat Simple_repeat 1 27 0 7 794 220 213 0 21 chr4 27469077 27469125 -128160995 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 794 897 266 111 10 chr4 27469390 27469697 -128160423 - MTE2a LTR MaLR -2 377 40 7 794 25 65 0 0 chr4 27469991 27470037 -128160083 + AT_rich Low_complexity Low_complexity 1 46 0 7 794 192 217 0 0 chr4 27470253 27470299 -128159821 + CT-rich Low_complexity Low_complexity 3 48 0 7 794 320 364 0 0 chr4 27470763 27470873 -128159247 - Lx8 LINE L1 -185 7288 7179 7 794 572 293 82 31 chr4 27471127 27471538 -128158582 + Lx3B LINE L1 4964 5389 -491 7 794 6950 135 42 51 chr4 27471661 27471756 -128158364 + Lx3B LINE L1 5702 5796 -1177 7 794 1216 54 0 0 chr4 27471756 27471904 -128158216 + B1_Mus1 SINE Alu 1 148 0 7 794 6950 135 42 51 chr4 27471904 27473086 -128157034 + Lx3B LINE L1 5797 6967 -6 7 794 776 327 173 25 chr4 27473226 27473747 -128156373 + Lx8 LINE L1 6273 6870 -603 7 794 234 0 0 0 chr4 27474999 27475025 -128155095 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 794 231 170 0 0 chr4 27475025 27475072 -128155048 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 794 411 250 52 35 chr4 27475084 27475258 -128154862 - Lx8 LINE L1 -1571 5902 5692 7 794 276 278 22 60 chr4 27475288 27475422 -128154698 - Lx8 LINE L1 -228 5619 5491 7 794 6044 42 14 0 chr4 27475526 27476268 -128153852 - L1Md_F3 LINE L1 -14 6570 5819 7 794 7075 119 10 9 chr4 27476449 27476563 -128153557 - Lx LINE L1 -3 6651 6536 7 794 4707 127 16 43 chr4 27476563 27477395 -128152725 + RMER17D2 LTR ERVK 1 809 0 7 794 7075 123 10 9 chr4 27477395 27478537 -128151583 - Lx LINE L1 -119 6535 5394 7 794 23 92 0 0 chr4 27478541 27478606 -128151514 + AT_rich Low_complexity Low_complexity 1 65 0 7 794 507 161 147 45 chr4 27478679 27478707 -128151413 + L1_Mur2 LINE L1 3903 3932 -1945 7 794 883 90 113 0 chr4 27478707 27478840 -128151280 + B1_Mus1 SINE Alu 1 148 0 7 794 246 32 0 0 chr4 27478843 27478874 -128151246 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 794 507 161 147 45 chr4 27478874 27478997 -128151123 + L1_Mur2 LINE L1 3933 4071 -1806 7 794 4326 163 5 1 chr4 27479002 27479787 -128150333 - MusHAL1 LINE L1 -949 1763 976 7 794 11826 153 10 16 chr4 27479888 27482109 -128148011 - MusHAL1 LINE L1 -281 2431 224 7 794 330 258 15 22 chr4 27482114 27482131 -128147989 - L1_Mur3 LINE L1 -6465 1247 1232 7 794 6352 146 35 60 chr4 27482131 27483065 -128147055 - Lx3_Mus LINE L1 0 7009 6036 7 794 465 19 0 0 chr4 27483065 27483119 -128147001 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 7 794 6352 146 35 60 chr4 27483119 27483308 -128146812 - Lx3_Mus LINE L1 -974 6035 5912 7 794 495 48 0 0 chr4 27483308 27483370 -128146750 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 794 6352 146 35 60 chr4 27483370 27483408 -128146712 - Lx3_Mus LINE L1 -1098 5911 5876 7 794 2421 61 59 35 chr4 27483408 27483746 -128146374 + ORR1A1 LTR MaLR 1 346 0 7 794 6352 146 35 60 chr4 27483746 27483814 -128146306 - Lx3_Mus LINE L1 -1134 5875 5810 7 794 2971 225 27 20 chr4 27483814 27484544 -128145576 - L1VL4 LINE L1 -5410 892 158 7 794 23 33 0 0 chr4 27484545 27484575 -128145545 + AT_rich Low_complexity Low_complexity 1 30 0 7 794 208 98 49 0 chr4 27484821 27484862 -128145258 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 7 794 279 253 13 0 chr4 27485038 27485117 -128145003 + GA-rich Low_complexity Low_complexity 4 83 0 7 794 30 27 0 0 chr4 27485699 27485736 -128144384 + AT_rich Low_complexity Low_complexity 1 37 0 7 794 23 0 0 0 chr4 27485830 27485853 -128144267 + AT_rich Low_complexity Low_complexity 1 23 0 7 794 738 269 11 81 chr4 27485858 27486129 -128143991 + Lx3_Mus LINE L1 3 254 -6730 7 794 22456 115 27 6 chr4 27486124 27490763 -128139357 + Lx3_Mus LINE L1 2266 7001 -8 7 794 207 0 0 0 chr4 27491230 27491253 -128138867 + (A)n Simple_repeat Simple_repeat 1 23 0 7 794 1041 144 67 0 chr4 27491370 27491550 -128138570 - B2_Mm2 SINE B2 -3 192 1 7 794 981 83 0 15 chr4 27491557 27491692 -128138428 - L1_Mus2 LINE L1 -132 6434 6302 7 794 811 108 0 120 chr4 27491723 27491881 -128138239 + L1_Mus2 LINE L1 6427 6565 -1 7 794 396 0 0 0 chr4 27491960 27492004 -128138116 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 7 794 3959 139 28 36 chr4 27492004 27492691 -128137429 - Lx2 LINE L1 -13 6984 6304 7 794 2016 134 92 4 chr4 27492692 27493153 -128136967 + Lx2 LINE L1 5716 6254 -743 7 794 828 319 104 0 chr4 27493669 27493976 -128136144 + MTE2b LTR MaLR 1 339 -40 7 794 264 122 0 0 chr4 27494494 27494535 -128135585 + (T)n Simple_repeat Simple_repeat 1 41 0 7 794 480 111 0 0 chr4 27494791 27494881 -128135239 + (T)n Simple_repeat Simple_repeat 1 90 0 7 794 180 0 0 0 chr4 27495910 27495930 -128134190 + (T)n Simple_repeat Simple_repeat 1 20 0 7 794 534 196 187 13 chr4 27496413 27496563 -128133557 - 7SK RNA RNA -84 247 72 7 794 2623 46 0 3 chr4 27497284 27497611 -128132509 + L1Md_F2 LINE L1 6257 6582 0 7 794 230 331 40 16 chr4 27499053 27499179 -128130941 + Tigger15a DNA TcMar 364 492 -223 7 794 1824 68 98 0 chr4 27499736 27500000 -128130120 + L1_Mus4 LINE L1 5655 5944 -692 7 794 1023 110 0 0 chr4 27500000 27500146 -128129974 + L1_Mus4 LINE L1 5945 6090 -548 1 794 1855 117 0 3 chr4 27500146 27500428 -128129692 + L1_Mus4 LINE L1 6356 6636 0 1 794 495 75 0 24 chr4 27501745 27501818 -128128302 + L1Md_F2 LINE L1 6487 6559 -23 2 794 270 56 0 0 chr4 27501818 27501854 -128128266 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 794 332 305 28 28 chr4 27501995 27502103 -128128017 + MLT1A0 LTR MaLR 234 341 -24 4 794 297 0 0 0 chr4 27502182 27502215 -128127905 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 794 459 0 0 0 chr4 27502215 27502265 -128127855 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 794 333 140 0 0 chr4 27503219 27503276 -128126844 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 794 1193 40 7 0 chr4 27503276 27503427 -128126693 + (GA)n Simple_repeat Simple_repeat 1 152 0 8 794 623 300 12 36 chr4 27503652 27503818 -128126302 + RSINE1 SINE B4 4 165 0 9 794 318 347 101 23 chr4 27505599 27505906 -128124214 - Lx8 LINE L1 -23 7450 7120 1 794 300 302 18 28 chr4 27506389 27506498 -128123622 - Lx8 LINE L1 -451 7022 6915 1 794 30993 86 8 1 chr4 27506515 27507713 -128122407 + L1Md_F2 LINE L1 1210 2417 -3466 1 794 378 0 0 0 chr4 27507713 27507755 -128122365 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 794 30993 86 8 1 chr4 27507755 27510900 -128119220 + L1Md_F2 LINE L1 2418 5583 -300 1 794 7862 57 5 3 chr4 27510901 27511895 -128118225 + L1Md_F2 LINE L1 5587 6582 0 1 794 319 55 18 18 chr4 27512180 27512235 -128117885 + (CAA)n Simple_repeat Simple_repeat 2 56 0 1 794 302 0 26 0 chr4 27512883 27512921 -128117199 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 794 1747 154 64 0 chr4 27513122 27513433 -128116687 + Lx3C LINE L1 6633 6963 -13 1 794 392 55 0 18 chr4 27513433 27513489 -128116631 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 794 5634 75 1 3 chr4 27513501 27514238 -128115882 + L1_Mus2 LINE L1 5829 6564 -2 1 794 23 33 0 0 chr4 27514269 27514299 -128115821 + AT_rich Low_complexity Low_complexity 1 30 0 1 794 1061 98 31 0 chr4 27514742 27514905 -128115215 - B2_Mm2 SINE B2 -1 194 27 1 794 5466 10 0 0 chr4 27514918 27515531 -128114589 - L1Md_T LINE L1 0 6582 5970 2 794 7757 12 0 0 chr4 27515531 27516520 -128113600 + L1Md_T LINE L1 4984 5972 -610 2 794 308 71 0 0 chr4 27516520 27516562 -128113558 - B2_Mm2 SINE B2 -153 42 1 1 794 1044 99 0 0 chr4 27517377 27517518 -128112602 + B1_Mus1 SINE Alu 1 141 -7 2 794 306 87 0 0 chr4 27517518 27517564 -128112556 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 794 194 91 0 29 chr4 27518148 27518176 -128111944 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2 794 1131 95 0 0 chr4 27518176 27518324 -128111796 - B1_Mus1 SINE Alu 0 148 1 2 794 23 0 0 0 chr4 27518876 27518899 -128111221 + AT_rich Low_complexity Low_complexity 1 23 0 2 794 536 0 16 0 chr4 27519796 27519860 -128110260 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2 794 5935 59 3 5 chr4 27520345 27521107 -128109013 + L1Md_F2 LINE L1 5822 6581 -1 2 794 650 245 14 0 chr4 27521340 27521479 -128108641 - Lx9 LINE L1 -925 6719 6579 2 794 1092 289 25 25 chr4 27521649 27522007 -128108113 + Lx9 LINE L1 6362 6719 -925 2 794 758 134 69 17 chr4 27522132 27522306 -128107814 + Lx9 LINE L1 7461 7643 -1 3 794 21 36 0 0 chr4 27522307 27522335 -128107785 + AT_rich Low_complexity Low_complexity 1 28 0 3 795 29 70 0 0 chr4 27525434 27525491 -128104629 + AT_rich Low_complexity Low_complexity 1 57 0 3 795 4087 174 28 10 chr4 27526051 27526829 -128103291 + Lx3B LINE L1 6178 6969 -4 3 795 21 57 0 0 chr4 27526832 27526867 -128103253 + AT_rich Low_complexity Low_complexity 1 35 0 3 795 21 0 0 0 chr4 27527061 27527082 -128103038 + AT_rich Low_complexity Low_complexity 1 21 0 3 795 27 0 0 0 chr4 27527124 27527151 -128102969 + AT_rich Low_complexity Low_complexity 1 27 0 3 795 21 36 0 0 chr4 27527255 27527283 -128102837 + AT_rich Low_complexity Low_complexity 1 28 0 3 795 683 293 60 9 chr4 27527384 27527601 -128102519 - ORR1D2 LTR MaLR -2 368 141 3 795 218 239 14 40 chr4 27527654 27527728 -128102392 + C-rich Low_complexity Low_complexity 5 76 0 3 795 521 263 90 10 chr4 27527728 27527891 -128102229 - ORR1D2 LTR MaLR -197 177 1 3 795 198 340 141 4 chr4 27528255 27528503 -128101617 - L2 LINE L2 -761 2658 2377 4 795 387 0 0 0 chr4 27528614 27528657 -128101463 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 795 907 109 73 0 chr4 27530533 27530670 -128099450 + B1_Mm SINE Alu 1 147 0 4 795 202 73 49 0 chr4 27530677 27530718 -128099402 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 795 222 62 0 0 chr4 27530853 27530885 -128099235 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 795 315 0 0 0 chr4 27531754 27531789 -128098331 + (CTA)n Simple_repeat Simple_repeat 1 35 0 4 795 29 47 0 0 chr4 27531801 27531844 -128098276 + AT_rich Low_complexity Low_complexity 1 43 0 4 795 382 307 32 13 chr4 27531865 27532020 -128098100 - RSINE1 SINE B4 -5 160 3 4 795 280 42 0 77 chr4 27532317 27532369 -128097751 + (CAGAGA)n Simple_repeat Simple_repeat 2 49 0 4 795 284 323 99 107 chr4 27533899 27534142 -128095978 + ORR1E LTR MaLR 119 359 0 4 795 35 0 0 0 chr4 27534229 27534264 -128095856 + AT_rich Low_complexity Low_complexity 1 35 0 5 795 290 123 18 0 chr4 27534850 27534907 -128095213 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 795 21 71 0 0 chr4 27534943 27534985 -128095135 + AT_rich Low_complexity Low_complexity 1 42 0 5 795 306 358 15 87 chr4 27535383 27535579 -128094541 - L3 LINE CR1 -2 4487 4306 5 795 459 0 0 0 chr4 27535605 27535656 -128094464 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 795 594 41 0 0 chr4 27535656 27535728 -128094392 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 795 1571 203 13 9 chr4 27536268 27536586 -128093534 - ORR1A4 LTR MaLR -8 321 3 5 795 396 0 0 0 chr4 27537106 27537150 -128092970 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 795 1927 186 32 13 chr4 27538090 27538467 -128091653 + ORR1C2 LTR MaLR 1 384 0 5 795 1972 139 3 61 chr4 27538557 27538902 -128091218 - ORR1A2 LTR MaLR 0 327 3 5 795 307 21 0 60 chr4 27539064 27539114 -128091006 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 6 795 1155 82 0 0 chr4 27539120 27539267 -128090853 - B1_Mm SINE Alu 0 147 1 6 795 1805 246 72 104 chr4 27539412 27540133 -128089987 + Lx9 LINE L1 6748 7445 -199 6 795 5089 157 29 11 chr4 27540138 27541049 -128089071 + Lx3B LINE L1 6043 6969 -4 6 795 247 312 39 39 chr4 27541243 27541373 -128088747 - Lx9 LINE L1 -267 7377 7248 6 795 644 67 11 0 chr4 27542206 27542296 -128087824 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 795 1087 89 0 0 chr4 27542372 27542518 -128087602 - B1_Mus2 SINE Alu 0 147 2 6 795 334 333 0 23 chr4 27542549 27542681 -128087439 - Lx6 LINE L1 -57 7403 7275 6 795 21246 95 108 16 chr4 27542688 27544458 -128085662 + L1Md_F2 LINE L1 311 1977 -3906 6 795 255 31 0 0 chr4 27544458 27544490 -128085630 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 795 21246 86 213 29 chr4 27544490 27547315 -128082805 + L1Md_F2 LINE L1 1978 5586 -297 6 795 7796 67 1 4 chr4 27547315 27548312 -128081808 + L1Md_F2 LINE L1 5587 6580 -2 6 795 275 0 29 0 chr4 27548345 27548380 -128081740 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 7 795 336 236 107 18 chr4 27548380 27548492 -128081628 - Lx6 LINE L1 -196 7264 7143 6 795 6448 55 14 0 chr4 27548842 27549639 -128080481 + RLTR13C2 LTR ERVK 1 808 0 7 795 8416 118 34 3 chr4 27549678 27551903 -128078217 - Lx3A LINE L1 0 6981 4675 7 795 500 261 0 0 chr4 27551899 27552010 -128078110 - Lx5 LINE L1 -698 6352 6242 7 795 318 50 0 0 chr4 27552016 27552056 -128078064 + (TTA)n Simple_repeat Simple_repeat 1 40 0 7 795 434 84 0 14 chr4 27552056 27552128 -128077992 - Lx2A LINE L1 -15 6993 6923 7 795 2230 228 35 55 chr4 27552166 27553074 -128077046 - Lx6 LINE L1 -1251 6209 5307 6 795 25 65 0 0 chr4 27553132 27553178 -128076942 + AT_rich Low_complexity Low_complexity 1 46 0 7 795 186 191 0 0 chr4 27553247 27553294 -128076826 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 7 795 329 339 25 17 chr4 27553353 27553473 -128076647 - B1F1 SINE Alu -3 146 26 7 795 258 324 70 26 chr4 27553783 27553897 -128076223 - PB1D9 SINE Alu 0 120 2 7 795 25 51 0 0 chr4 27553900 27553939 -128076181 + AT_rich Low_complexity Low_complexity 1 39 0 8 795 14374 104 21 2 chr4 27555437 27558349 -128071771 + L1_Mus1 LINE L1 3593 6564 -3 8 795 1363 192 164 10 chr4 27558630 27558940 -128071180 - ORR1B2 LTR MaLR 0 367 10 8 795 212 77 26 0 chr4 27559155 27559194 -128070926 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 795 1048 321 36 36 chr4 27559805 27560300 -128069820 + Lx9 LINE L1 6686 7180 -464 8 795 7845 57 0 6 chr4 27560309 27561310 -128068810 + L1Md_F2 LINE L1 5588 6582 0 8 795 238 274 171 99 chr4 27561360 27561786 -128068334 + Lx9 LINE L1 7187 7643 -1 8 795 23 78 0 0 chr4 27562399 27562450 -128067670 + AT_rich Low_complexity Low_complexity 1 51 0 8 795 300 27 0 0 chr4 27564203 27564240 -128065880 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 795 34 42 0 0 chr4 27565480 27565528 -128064592 + AT_rich Low_complexity Low_complexity 1 48 0 8 795 824 87 1 39 chr4 27566000 27566139 -128063981 + Lx3_Mus LINE L1 5782 5922 -1087 8 795 711 0 0 0 chr4 27566139 27566218 -128063902 + (GAA)n Simple_repeat Simple_repeat 3 81 0 9 795 1294 57 6 6 chr4 27566218 27566395 -128063725 + (GGA)n Simple_repeat Simple_repeat 2 178 0 9 795 243 279 37 37 chr4 27566395 27566438 -128063682 - Lx6 LINE L1 -202 7494 7448 9 795 6169 118 22 66 chr4 27566438 27567553 -128062567 + Lx3A LINE L1 5908 6973 -8 9 795 624 62 0 0 chr4 27567554 27567635 -128062485 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 795 4649 284 34 35 chr4 27567635 27568398 -128061722 - Lx6 LINE L1 -249 7447 6422 9 795 2888 129 44 2 chr4 27568398 27568850 -128061270 - MT2C_Mm LTR ERVL -4 471 1 9 795 4649 284 33 35 chr4 27568850 27569611 -128060509 - Lx6 LINE L1 -1039 6421 5660 9 795 3331 35 5 0 chr4 27569611 27570005 -128060115 - MTA_Mm LTR MaLR 0 396 1 9 795 4649 210 33 16 chr4 27570005 27570386 -128059734 - Lx6 LINE L1 -1801 5659 5264 9 795 336 24 0 0 chr4 27570386 27570427 -128059693 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 9 795 3174 210 33 16 chr4 27570427 27570612 -128059508 - Lx6 LINE L1 -617 5263 5080 9 795 3787 157 13 7 chr4 27570617 27571324 -128058796 - L1_Mur2 LINE L1 -2913 2964 2254 9 795 1971 233 6 17 chr4 27571325 27571805 -128058315 - Lx6 LINE L1 -817 5063 4589 9 795 630 208 19 0 chr4 27571804 27571958 -128058162 - Lx6 LINE L1 -1486 4394 4238 9 795 24 32 0 0 chr4 27572028 27572059 -128058061 + AT_rich Low_complexity Low_complexity 1 31 0 9 795 242 89 44 0 chr4 27572059 27572104 -128058016 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 795 1698 288 46 44 chr4 27572112 27572679 -128057441 - MTC-int LTR MaLR -240 1018 451 1 795 282 382 39 19 chr4 27572651 27572806 -128057314 - MTC LTR MaLR -263 158 1 1 795 356 364 61 6 chr4 27573529 27573692 -128056428 + MTE2a LTR MaLR 60 231 -148 1 795 343 220 43 11 chr4 27573709 27573801 -128056319 + MTE2a LTR MaLR 285 379 0 1 795 26 0 0 0 chr4 27574714 27574740 -128055380 + AT_rich Low_complexity Low_complexity 1 26 0 1 795 364 361 53 43 chr4 27575425 27575782 -128054338 + MLT1C LTR MaLR 20 358 -32 1 795 376 303 42 61 chr4 27576178 27576392 -128053728 - B3 SINE B2 -6 210 1 1 795 189 0 0 0 chr4 27576714 27576735 -128053385 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 795 1084 318 181 19 chr4 27577314 27577951 -128052169 + RCHARR1 DNA MER1_type 3 742 -232 1 795 261 75 0 0 chr4 27578062 27578102 -128052018 + (T)n Simple_repeat Simple_repeat 1 40 0 1 795 1180 61 0 0 chr4 27578102 27578249 -128051871 - B1_Mus2 SINE Alu 0 147 1 1 795 195 69 0 0 chr4 27578659 27578688 -128051432 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 795 713 304 98 33 chr4 27578701 27578825 -128051295 + L1MA4A LINE L1 4618 4753 -1390 1 795 180 0 0 0 chr4 27578825 27578845 -128051275 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 795 713 304 98 33 chr4 27578845 27579291 -128050829 + L1MA4A LINE L1 4754 5224 -919 1 795 453 241 91 57 chr4 27579327 27579503 -128050617 + MTC LTR MaLR 69 250 -171 1 795 360 342 75 51 chr4 27579518 27580011 -128050109 + L1MA4A LINE L1 5286 5827 -476 1 795 243 203 0 0 chr4 27580854 27580928 -128049192 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 795 22 35 0 0 chr4 27580934 27580963 -128049157 + AT_rich Low_complexity Low_complexity 1 29 0 1 795 924 174 15 0 chr4 27581739 27582007 -128048113 + CT-rich Low_complexity Low_complexity 1 272 0 1 795 6647 139 28 1 chr4 27582061 27583132 -128046988 - Lx2 LINE L1 -242 6755 5656 1 795 2029 163 13 5 chr4 27583134 27583523 -128046597 - Lx2 LINE L1 -521 5356 4965 1 795 22 0 0 0 chr4 27583539 27583561 -128046559 + AT_rich Low_complexity Low_complexity 1 22 0 1 795 440 314 113 111 chr4 27583628 27584044 -128046076 + Lx8 LINE L1 7029 7445 -28 1 795 3906 49 18 0 chr4 27584126 27584614 -128045506 + L1Md_F3 LINE L1 6074 6570 -14 1 795 26 0 0 0 chr4 27584808 27584834 -128045286 + AT_rich Low_complexity Low_complexity 1 26 0 1 795 25 31 0 0 chr4 27585318 27585350 -128044770 + AT_rich Low_complexity Low_complexity 1 32 0 1 795 587 296 4 74 chr4 27585560 27585622 -128044498 + B3 SINE B2 1 62 -154 1 795 318 26 0 0 chr4 27585622 27585661 -128044459 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 795 1080 94 0 0 chr4 27585661 27585799 -128044321 - B1_Mm SINE Alu -9 138 1 1 795 587 296 4 74 chr4 27585799 27585965 -128044155 + B3 SINE B2 63 213 -3 1 795 623 263 29 8 chr4 27585974 27586161 -128043959 + B3 SINE B2 1 196 -2 1 795 26 88 0 0 chr4 27586354 27586422 -128043698 + AT_rich Low_complexity Low_complexity 1 68 0 1 795 2245 96 154 13 chr4 27587232 27587399 -128042721 + Lx3_Mus LINE L1 5740 5905 -1104 1 795 356 0 23 0 chr4 27587399 27587443 -128042677 + (CAA)n Simple_repeat Simple_repeat 2 46 0 1 795 2245 96 154 13 chr4 27587443 27587665 -128042455 + Lx3_Mus LINE L1 5906 6184 -825 1 795 190 81 54 0 chr4 27588636 27588673 -128041447 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 1 795 210 229 30 50 chr4 27588685 27588786 -128041334 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 1 795 362 100 0 16 chr4 27588981 27589042 -128041078 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 1 795 225 154 0 0 chr4 27589037 27589076 -128041044 + GA-rich Low_complexity Low_complexity 3 41 0 1 795 297 0 0 0 chr4 27589322 27589355 -128040765 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1 795 4620 112 32 6 chr4 27589356 27590047 -128040073 - Lx3_Mus LINE L1 -9 7000 6292 1 795 8490 112 0 16 chr4 27590049 27590249 -128039871 + L1_Mur1 LINE L1 4448 4646 -1240 1 795 242 29 29 0 chr4 27590249 27590284 -128039836 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 1 795 8490 112 0 16 chr4 27590284 27591387 -128038733 + L1_Mur1 LINE L1 4647 5730 -156 1 795 318 222 136 65 chr4 27591387 27591541 -128038579 + RLTR15 LTR ERVK 4 168 -191 1 795 24 0 0 0 chr4 27591785 27591809 -128038311 + AT_rich Low_complexity Low_complexity 1 24 0 1 795 23 33 0 0 chr4 27592190 27592220 -128037900 + AT_rich Low_complexity Low_complexity 1 30 0 1 795 264 348 71 42 chr4 27592776 27592944 -128037176 + MIRb SINE MIR 45 217 -51 1 795 29 28 0 0 chr4 27593431 27593467 -128036653 + AT_rich Low_complexity Low_complexity 1 36 0 1 795 36 0 0 21 chr4 27593758 27593788 -128036332 + AT_rich Low_complexity Low_complexity 1 30 0 1 795 411 125 34 11 chr4 27593788 27593877 -128036243 - Lx LINE L1 -7 6647 6557 1 795 36 0 0 21 chr4 27593877 27593893 -128036227 + AT_rich Low_complexity Low_complexity 1 16 0 1 795 30 45 0 0 chr4 27593946 27593990 -128036130 + AT_rich Low_complexity Low_complexity 1 44 0 1 795 2574 70 3 56 chr4 27594046 27594422 -128035698 - L1_Mus2 LINE L1 0 6566 6211 1 795 354 308 74 11 chr4 27594448 27594717 -128035403 - L1MB7 LINE L1 -334 5850 5565 1 795 37 0 0 0 chr4 27594806 27594843 -128035277 + AT_rich Low_complexity Low_complexity 1 37 0 1 795 1947 72 4 2 chr4 27594946 27595218 -128034902 - L1_Mus2 LINE L1 -412 5828 5581 1 795 24 0 0 0 chr4 27595657 27595681 -128034439 + AT_rich Low_complexity Low_complexity 1 24 0 1 795 25 0 0 0 chr4 27596124 27596149 -128033971 + AT_rich Low_complexity Low_complexity 1 25 0 1 795 369 321 110 26 chr4 27596452 27596952 -128033168 - L1MCa LINE L1 -3553 2768 2222 1 795 881 44 9 0 chr4 27597727 27597841 -128032279 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 795 1003 336 35 6 chr4 27598964 27599305 -128030815 - MTEb LTR MaLR -20 359 9 1 795 316 378 22 22 chr4 27599793 27599977 -128030143 - MLT2B4 LTR ERVL -353 203 20 1 795 420 20 0 0 chr4 27600399 27600448 -128029672 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 795 225 0 0 0 chr4 27600562 27600587 -128029533 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 795 7472 71 2 4 chr4 27601005 27602592 -128027528 - L1Md_F2 LINE L1 -19 6563 4979 1 795 273 54 0 0 chr4 27602591 27602628 -128027492 + L1Md_F2 LINE L1 4890 4926 -957 1 795 916 293 108 5 chr4 27603247 27603625 -128026495 + MTD LTR MaLR 1 417 -2 1 795 259 315 11 0 chr4 27603945 27604037 -128026083 - MLT2C1 LTR ERVL -290 107 15 1 795 2551 254 9 14 chr4 27604893 27605468 -128024652 + Lx5 LINE L1 6339 6910 -140 1 795 15334 76 21 8 chr4 27605490 27608295 -128021825 - L1Md_F2 LINE L1 -1 6581 3725 1 795 1998 143 0 0 chr4 27608313 27608600 -128021520 - L1VL1 LINE L1 -6134 288 2 1 795 243 152 0 0 chr4 27608697 27608743 -128021377 + A-rich Low_complexity Low_complexity 1 46 0 1 795 1003 96 76 0 chr4 27608758 27608915 -128021205 + Lx3C LINE L1 6592 6760 -216 1 795 537 290 14 41 chr4 27608934 27609225 -128020895 + L1_Rod LINE L1 2985 3267 -2580 1 795 2522 174 0 5 chr4 27609267 27609700 -128020420 - L1Md_F LINE L1 -5953 566 136 1 795 465 50 0 0 chr4 27609792 27609852 -128020268 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 795 239 204 0 23 chr4 27609871 27609938 -128020182 - L1M3 LINE L1 -538 5762 5700 1 795 286 266 90 6 chr4 27609934 27610112 -128020008 + L1MA7 LINE L1 6099 6291 0 1 795 296 102 0 20 chr4 27610670 27610720 -128019400 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 795 511 333 53 53 chr4 27610724 27610807 -128019313 - B4A SINE B4 -26 266 192 1 795 1554 52 0 0 chr4 27610807 27610998 -128019122 - B2_Mm1a SINE B2 -2 191 1 1 795 511 333 53 53 chr4 27610998 27611180 -128018940 - B4A SINE B4 -101 191 1 1 795 242 269 158 21 chr4 27611212 27611307 -128018813 - B1F1 SINE Alu -41 108 1 1 795 23 0 0 0 chr4 27611377 27611400 -128018720 + AT_rich Low_complexity Low_complexity 1 23 0 1 795 181 0 69 0 chr4 27611435 27611464 -128018656 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 795 180 0 0 0 chr4 27612647 27612667 -128017453 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 795 238 377 96 30 chr4 27613629 27613796 -128016324 - MER102c DNA MER1_type -87 244 67 1 795 1082 281 49 27 chr4 27614042 27614452 -128015668 - MTD LTR MaLR 0 419 1 1 795 267 103 0 0 chr4 27615426 27615465 -128014655 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 795 2076 203 60 32 chr4 27615637 27616057 -128014063 + RLTR20A2 LTR ERVK 73 488 -90 1 795 608 38 13 0 chr4 27616057 27616136 -128013984 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 795 2076 189 57 22 chr4 27616136 27616214 -128013906 + RLTR20A2 LTR ERVK 489 576 -2 1 795 372 181 27 27 chr4 27616562 27616636 -128013484 + MER5A1 DNA MER1_type 1 74 -92 1 795 1843 112 38 3 chr4 27616884 27617171 -128012949 + Lx LINE L1 5662 5958 -696 1 795 5979 114 68 3 chr4 27617191 27618133 -128011987 + RLTR13D4 LTR ERVK 31 1033 0 1 795 3312 129 127 22 chr4 27618133 27618726 -128011394 + Lx LINE L1 5978 6632 -22 1 795 1479 173 44 76 chr4 27619575 27619919 -128010201 - RLTR23 LTR ERV1 0 430 98 1 795 593 122 50 10 chr4 27619966 27620065 -128010055 - RLTR23 LTR ERV1 -327 103 1 1 795 3308 220 110 50 chr4 27620065 27620749 -128009371 - ORR1B2-int LTR MaLR -527 982 223 1 795 3342 43 2 0 chr4 27620749 27621144 -128008976 + MTA_Mm LTR MaLR 1 396 0 1 795 3308 220 110 50 chr4 27621144 27621385 -128008735 - ORR1B2-int LTR MaLR -1287 222 1 1 795 1458 253 64 6 chr4 27621390 27621732 -128008388 - ORR1B2 LTR MaLR -5 362 1 1 795 272 296 40 34 chr4 27621900 27622157 -128007963 + L1M3 LINE L1 5257 5520 -780 1 795 279 266 150 27 chr4 27622295 27622442 -128007678 + L1M3 LINE L1 5690 5854 -335 1 795 321 320 34 7 chr4 27622493 27622641 -128007479 - RSINE1 SINE B4 -10 155 4 1 795 243 333 33 7 chr4 27622641 27622792 -128007328 + L1MA6 LINE L1 5852 6006 -294 1 795 253 306 124 0 chr4 27622884 27623005 -128007115 + L1MA6 LINE L1 6139 6274 -26 1 795 2249 184 78 24 chr4 27623308 27623731 -128006389 - RLTR41 LTR ERV1 0 446 1 1 795 261 57 0 0 chr4 27623733 27623768 -128006352 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 795 219 36 0 0 chr4 27624685 27624713 -128005407 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 795 356 319 33 0 chr4 27625976 27626067 -128004053 + RSINE1 SINE B4 64 157 -8 1 795 216 0 0 0 chr4 27626081 27626105 -128004015 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 795 29 0 0 0 chr4 27626117 27626146 -128003974 + AT_rich Low_complexity Low_complexity 1 29 0 1 795 231 157 0 0 chr4 27626445 27626496 -128003624 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 795 973 9 0 0 chr4 27627817 27627924 -128002196 + U6 snRNA snRNA 1 107 0 2 795 21101 12 25 25 chr4 27627924 27629786 -128000334 + L1_Mm LINE L1 3006 4914 -969 2 795 230 183 46 77 chr4 27629786 27629851 -128000269 - RMER20A LTR ERVK -268 248 186 2 795 21101 12 25 25 chr4 27629851 27630505 -127999615 + L1_Mm LINE L1 4915 5586 -297 2 795 8785 13 1 0 chr4 27630505 27631499 -127998621 + L1Md_A LINE L1 5587 6581 -1 2 795 203 0 0 36 chr4 27631649 27631677 -127998443 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2 795 812 307 71 65 chr4 27631916 27632379 -127997741 - RMER13A LTR ERVK -394 466 1 2 795 468 0 0 0 chr4 27632441 27632493 -127997627 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 795 60 27 0 0 chr4 27632978 27633052 -127997068 + AT_rich Low_complexity Low_complexity 1 74 0 2 795 6201 147 15 26 chr4 27633053 27634139 -127995981 - Lx2 LINE L1 -4 6993 5920 2 795 3335 35 5 0 chr4 27634140 27634534 -127995586 + MTA_Mm LTR MaLR 1 396 0 2 795 6652 91 34 82 chr4 27634534 27635687 -127994433 + MTA_Mm-int LTR MaLR 1 1098 0 2 795 598 65 10 42 chr4 27635687 27635783 -127994337 + MTA_Mm LTR MaLR 1 93 -303 2 795 2426 113 33 118 chr4 27635773 27636314 -127993806 - RMER17A LTR ERVK -112 639 145 2 795 192 97 0 0 chr4 27637234 27637265 -127992855 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 795 23 0 0 0 chr4 27638887 27638910 -127991210 + AT_rich Low_complexity Low_complexity 1 23 0 2 795 22 56 0 0 chr4 27639073 27639109 -127991011 + AT_rich Low_complexity Low_complexity 1 36 0 2 795 257 221 65 112 chr4 27639409 27639516 -127990604 - MLT1C LTR MaLR -16 451 350 2 795 942 216 13 48 chr4 27640038 27640266 -127989854 + URR1B DNA MER1_type 5 224 -1 2 795 26 50 0 0 chr4 27643139 27643179 -127986941 + AT_rich Low_complexity Low_complexity 1 40 0 2 795 183 80 0 0 chr4 27643301 27643326 -127986794 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 795 283 332 117 9 chr4 27643891 27644122 -127985998 - Lx8 LINE L1 -622 6851 6596 2 795 28 0 0 0 chr4 27644707 27644735 -127985385 + AT_rich Low_complexity Low_complexity 1 28 0 2 795 1654 333 82 40 chr4 27644889 27645778 -127984342 - Lx8 LINE L1 -121 7352 6402 2 795 3513 48 5 0 chr4 27645778 27646218 -127983902 - L1Md_F2 LINE L1 0 6582 6141 2 795 1654 333 82 40 chr4 27646218 27646556 -127983564 - Lx8 LINE L1 -1072 6401 6073 2 795 387 279 142 34 chr4 27646594 27646947 -127983173 + L1MB4 LINE L1 5778 6168 -12 2 795 337 331 50 35 chr4 27647684 27647825 -127982295 + B1F1 SINE Alu 7 149 0 2 795 399 386 55 31 chr4 27647999 27648419 -127981701 + L1M5 LINE L1 5353 5782 -391 2 795 1386 285 51 16 chr4 27648519 27648951 -127981169 + Lx6 LINE L1 5992 6438 -1022 2 795 1228 255 145 3 chr4 27648939 27649325 -127980795 + Lx6 LINE L1 6579 7019 -441 2 795 715 272 20 20 chr4 27649329 27649524 -127980596 + Lx6 LINE L1 7264 7458 -2 2 795 21 36 0 0 chr4 27649723 27649751 -127980369 + AT_rich Low_complexity Low_complexity 1 28 0 2 795 25 51 0 0 chr4 27649930 27649969 -127980151 + AT_rich Low_complexity Low_complexity 1 39 0 2 795 270 0 0 0 chr4 27650341 27650371 -127979749 + (A)n Simple_repeat Simple_repeat 1 30 0 2 795 258 368 65 29 chr4 27650909 27651155 -127978965 - MIR SINE MIR -6 256 2 2 795 416 327 7 13 chr4 27651200 27651352 -127978768 + Lx9 LINE L1 7271 7421 -223 2 795 180 0 0 0 chr4 27651388 27651408 -127978712 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 795 21 0 0 0 chr4 27651481 27651502 -127978618 + AT_rich Low_complexity Low_complexity 1 21 0 2 795 21 0 0 0 chr4 27651689 27651710 -127978410 + AT_rich Low_complexity Low_complexity 1 21 0 2 795 396 0 0 0 chr4 27651766 27651810 -127978310 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 795 1033 108 0 0 chr4 27652010 27652158 -127977962 + B1_Mus1 SINE Alu 1 148 0 2 795 411 38 0 0 chr4 27652161 27652214 -127977906 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 2 795 3171 210 97 36 chr4 27652252 27652795 -127977325 + RLTR25B LTR ERVK 1 611 -417 2 795 711 35 0 0 chr4 27652795 27652881 -127977239 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 2 795 3171 206 134 172 chr4 27652881 27653483 -127976637 + RLTR25B LTR ERVK 612 1102 -1 2 795 24 53 0 0 chr4 27653495 27653533 -127976587 + AT_rich Low_complexity Low_complexity 1 38 0 2 795 282 287 105 11 chr4 27654120 27654215 -127975905 - B1F SINE Alu -14 135 32 2 795 1758 172 3 3 chr4 27654215 27654541 -127975579 + Lx LINE L1 6322 6647 -7 2 795 189 74 0 0 chr4 27655294 27655321 -127974799 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 795 300 91 0 0 chr4 27655484 27655528 -127974592 + (CATA)n Simple_repeat Simple_repeat 4 47 0 2 796 3399 28 2 0 chr4 27657080 27657475 -127972645 - MTA_Mm LTR MaLR 0 396 1 2 796 9166 31 4 1 chr4 27657475 27658570 -127971550 - MTA_Mm-int LTR MaLR 0 1098 1 2 796 3399 28 2 0 chr4 27658570 27658965 -127971155 - MTA_Mm LTR MaLR 0 396 1 2 796 228 298 96 9 chr4 27659977 27660092 -127970028 + MER76 LTR ERVL 565 689 -2 2 796 494 316 147 0 chr4 27660386 27660604 -127969516 + MLT1B LTR MaLR 137 386 -4 2 796 21 36 0 0 chr4 27660633 27660661 -127969459 + AT_rich Low_complexity Low_complexity 1 28 0 2 796 217 313 60 0 chr4 27661059 27661126 -127968994 - B1F1 SINE Alu -78 71 1 2 796 444 111 0 0 chr4 27661679 27661751 -127968369 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 796 24 32 0 0 chr4 27662347 27662378 -127967742 + AT_rich Low_complexity Low_complexity 1 31 0 2 796 233 340 152 20 chr4 27662988 27663192 -127966928 + MLT1A LTR MaLR 175 405 -3 2 796 530 318 114 19 chr4 27663603 27664087 -127966033 + L1MC1 LINE L1 5571 6100 -233 2 796 239 200 45 15 chr4 27664802 27664868 -127965252 + (CTATA)n Simple_repeat Simple_repeat 2 69 0 2 796 5844 121 47 2 chr4 27665108 27666011 -127964109 + L1_Mus3 LINE L1 5695 6637 -1 2 796 2185 274 40 18 chr4 27666042 27666717 -127963403 + L1_Mur3 LINE L1 53 742 -6986 2 796 543 250 46 10 chr4 27666994 27667188 -127962932 + L1_Mur3 LINE L1 1861 2061 -3819 2 796 235 123 30 30 chr4 27667195 27667262 -127962858 + (TCTCTG)n Simple_repeat Simple_repeat 4 70 0 2 796 1576 235 45 67 chr4 27667355 27667675 -127962445 + L1_Mur3 LINE L1 4301 4625 -1255 2 796 2251 56 78 0 chr4 27667675 27667981 -127962139 + L1Md_F2 LINE L1 6253 6582 0 2 796 1576 235 45 67 chr4 27667981 27668243 -127961877 + L1_Mur3 LINE L1 4626 4869 -1011 2 796 189 107 0 0 chr4 27668244 27668272 -127961848 + (TCC)n Simple_repeat Simple_repeat 3 30 0 2 796 8023 132 45 20 chr4 27668288 27668902 -127961218 - Lx3B LINE L1 -5 6968 6335 2 796 3466 23 2 0 chr4 27668902 27669297 -127960823 + MTA_Mm LTR MaLR 1 396 0 2 796 8023 125 14 27 chr4 27669297 27670885 -127959235 - Lx3B LINE L1 -639 6334 4766 2 796 3651 243 15 31 chr4 27670885 27671096 -127959024 + L1_Mur3 LINE L1 4856 5057 -823 2 796 4821 183 36 1 chr4 27671096 27672003 -127958117 - Lx2 LINE L1 0 6997 6059 2 796 513 0 0 0 chr4 27672003 27672060 -127958060 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 796 3651 243 15 31 chr4 27672060 27672888 -127957232 + L1_Mur3 LINE L1 5058 5879 -1 2 796 1414 275 50 6 chr4 27672901 27673263 -127956857 + ORR1C1 LTR MaLR 1 378 0 2 796 26 50 0 0 chr4 27673474 27673514 -127956606 + AT_rich Low_complexity Low_complexity 1 40 0 2 796 627 344 48 18 chr4 27673522 27673919 -127956201 + MERVL_2A-int LTR ERVL 1193 1601 -4160 2 796 405 330 73 66 chr4 27673931 27674233 -127955887 + MERVL_2A-int LTR ERVL 1626 1929 -3828 2 796 514 315 30 20 chr4 27674292 27674493 -127955627 + MERVL_2A-int LTR ERVL 2090 2292 -3469 2 796 240 328 32 103 chr4 27674655 27674781 -127955339 + B4 SINE B4 107 223 -69 2 796 303 28 0 0 chr4 27674784 27674820 -127955300 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 796 362 296 35 86 chr4 27675613 27675986 -127954134 + L1M2 LINE L1 4870 5223 -920 2 796 3978 276 45 50 chr4 27676075 27677219 -127952901 + Lx6 LINE L1 6179 7310 -150 2 796 2499 104 8 3 chr4 27677219 27677585 -127952535 - L1_Mus3 LINE L1 -6 6632 6265 2 796 938 121 0 0 chr4 27677585 27677717 -127952403 - B1_Mus1 SINE Alu -16 132 1 2 796 3978 276 45 50 chr4 27677717 27677843 -127952277 + Lx6 LINE L1 7311 7442 -18 2 796 761 246 48 53 chr4 27677879 27678106 -127952014 + MTC LTR MaLR 196 421 0 2 796 395 192 57 12 chr4 27678105 27678195 -127951925 + MTC-int LTR MaLR 2 99 -1410 2 796 2224 275 82 12 chr4 27679012 27679588 -127950532 + L1_Mur3 LINE L1 385 1007 -6721 2 796 234 0 0 0 chr4 27679588 27679614 -127950506 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 796 2224 275 82 12 chr4 27679614 27679767 -127950353 + L1_Mur3 LINE L1 1008 1164 -6564 2 796 15213 73 6 4 chr4 27679765 27681673 -127948447 - L1_Mm LINE L1 -241 5642 3729 2 796 2085 113 32 29 chr4 27681673 27681983 -127948137 + RLTR10E LTR ERVK 1 311 0 2 796 15213 73 6 4 chr4 27681983 27682111 -127948009 - L1_Mm LINE L1 -2155 3728 3602 2 796 4319 54 13 0 chr4 27682104 27682639 -127947481 + L1Md_F2 LINE L1 5643 6184 -398 2 796 1320 102 0 0 chr4 27682636 27682822 -127947298 + L1_Mm LINE L1 4929 5114 -769 2 796 2753 75 0 0 chr4 27682817 27683176 -127946944 - L1Md_F2 LINE L1 -555 6027 5669 2 796 4070 85 0 16 chr4 27683176 27683751 -127946369 + L1Md_F2 LINE L1 6013 6578 -4 2 796 22 35 0 0 chr4 27683765 27683794 -127946326 + AT_rich Low_complexity Low_complexity 1 29 0 2 796 3699 189 58 24 chr4 27683805 27684322 -127945798 + L1_Mur3 LINE L1 2125 2643 -3237 2 796 233 57 0 28 chr4 27684322 27684358 -127945762 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 796 3699 189 58 24 chr4 27684358 27684680 -127945440 + L1_Mur3 LINE L1 2644 2992 -2888 2 796 11451 53 1 1 chr4 27684680 27686808 -127943312 - L1Md_F2 LINE L1 -25 6557 4429 2 796 2504 272 24 75 chr4 27686814 27687071 -127943049 + RMER1C Other Other 478 848 -494 2 796 297 0 0 0 chr4 27687071 27687104 -127943016 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 796 2504 256 25 86 chr4 27687104 27687305 -127942815 + RMER1C Other Other 849 1040 -302 2 796 1158 55 7 0 chr4 27687305 27687451 -127942669 + B1_Mus2 SINE Alu 1 147 0 2 796 2504 256 25 86 chr4 27687451 27687795 -127942325 + RMER1C Other Other 1041 1341 -1 2 796 914 210 161 3 chr4 27687801 27688093 -127942027 + L1_Mur3 LINE L1 3200 3537 -2343 2 796 1450 162 68 3 chr4 27688091 27688412 -127941708 - L1_Mur3 LINE L1 -1931 3949 3608 2 796 696 344 12 0 chr4 27688930 27689180 -127940940 - Lx8 LINE L1 -797 6676 6424 2 796 732 94 0 0 chr4 27689383 27689489 -127940631 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 796 28 0 0 0 chr4 27689520 27689548 -127940572 + AT_rich Low_complexity Low_complexity 1 28 0 2 796 27 29 0 0 chr4 27693555 27693589 -127936531 + AT_rich Low_complexity Low_complexity 1 34 0 2 796 249 408 33 37 chr4 27693645 27693859 -127936261 - B3 SINE B2 -1 215 3 2 796 24 32 0 0 chr4 27693885 27693916 -127936204 + AT_rich Low_complexity Low_complexity 1 31 0 2 796 29 84 0 0 chr4 27694330 27694401 -127935719 + AT_rich Low_complexity Low_complexity 1 71 0 2 796 2659 276 64 41 chr4 27694473 27694980 -127935140 - Lx9 LINE L1 -202 7442 6952 2 796 4679 52 0 2 chr4 27694980 27695562 -127934558 + L1Md_F2 LINE L1 5998 6578 -4 2 796 2659 276 64 41 chr4 27695562 27696167 -127933953 - Lx9 LINE L1 -693 6951 6305 2 796 418 231 50 19 chr4 27696866 27697025 -127933095 - Lx9 LINE L1 -8 7636 7473 2 796 5889 1 0 0 chr4 27697239 27697890 -127932230 - L1Md_A LINE L1 0 6582 5932 2 796 345 47 0 0 chr4 27698649 27698692 -127931428 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 796 450 0 0 0 chr4 27698737 27698787 -127931333 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 2 796 7063 105 14 17 chr4 27698791 27699891 -127930229 - L1_Mus3 LINE L1 -3 6635 5548 3 796 222 37 0 0 chr4 27700205 27700232 -127929888 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 796 231 61 0 0 chr4 27700310 27700343 -127929777 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 796 330 26 0 0 chr4 27700552 27700591 -127929529 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3 796 282 212 24 36 chr4 27700987 27701140 -127928980 + T-rich Low_complexity Low_complexity 1 151 0 3 796 1695 149 19 28 chr4 27701525 27701537 -127928583 + Lx3A LINE L1 6006 6017 -964 3 796 2892 51 73 0 chr4 27701537 27701931 -127928189 + L1Md_F2 LINE L1 6168 6582 0 3 796 1695 157 35 20 chr4 27701931 27702363 -127927757 + Lx3A LINE L1 6018 6653 -1 3 796 348 320 56 51 chr4 27702994 27703172 -127926948 - L1M2 LINE L1 -2300 3843 3665 3 796 607 320 126 43 chr4 27703850 27703971 -127926149 - L1MEc LINE L1 -4930 1470 1344 3 796 4995 92 4 1 chr4 27703971 27704667 -127925453 - Lx3_Mus LINE L1 0 7009 6312 3 796 607 320 126 43 chr4 27704667 27705431 -127924689 - L1MEc LINE L1 -5057 1343 511 3 796 234 310 70 9 chr4 27706200 27706314 -127923806 - L1MEc LINE L1 -5952 463 343 3 796 1413 276 32 81 chr4 27707246 27707742 -127922378 + RMER19C LTR ERVK 138 609 -2 3 796 739 338 47 35 chr4 27707787 27708213 -127921907 + Lx8 LINE L1 6629 7059 -414 3 796 319 358 103 52 chr4 27709809 27709983 -127920137 - B3A SINE B2 -7 191 9 3 796 207 244 0 0 chr4 27710003 27710044 -127920076 + (CTG)n Simple_repeat Simple_repeat 1 41 0 3 796 768 300 54 8 chr4 27710237 27710476 -127919644 + Lx8 LINE L1 7071 7320 -153 3 796 726 101 0 0 chr4 27710492 27710601 -127919519 + (GA)n Simple_repeat Simple_repeat 2 110 0 3 796 243 0 0 0 chr4 27710752 27710779 -127919341 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 796 471 100 0 0 chr4 27713014 27713084 -127917036 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 796 468 132 0 0 chr4 27713137 27713220 -127916900 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 796 21 36 0 0 chr4 27714826 27714854 -127915266 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 645 131 0 0 chr4 27715632 27715739 -127914381 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 796 486 343 0 62 chr4 27715741 27715887 -127914233 - RSINE1 SINE B4 -1 164 28 3 796 273 261 0 0 chr4 27715982 27716047 -127914073 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 796 23 68 0 0 chr4 27716070 27716114 -127914006 + AT_rich Low_complexity Low_complexity 1 44 0 3 796 26 30 0 0 chr4 27716186 27716219 -127913901 + AT_rich Low_complexity Low_complexity 1 33 0 3 796 23 54 0 0 chr4 27716361 27716398 -127913722 + AT_rich Low_complexity Low_complexity 1 37 0 3 796 7569 64 15 5 chr4 27716846 27717907 -127912213 - L1Md_F2 LINE L1 -1 6581 5490 3 796 350 183 0 40 chr4 27717907 27717981 -127912139 - URR1B DNA MER1_type -7 218 148 3 796 3014 147 114 158 chr4 27717982 27718869 -127911251 + RMER17D LTR ERVK 26 873 -16 3 796 813 201 38 0 chr4 27718905 27719064 -127911056 - URR1B DNA MER1_type -60 165 1 3 796 516 298 189 0 chr4 27719295 27719597 -127910523 + MTD LTR MaLR 1 359 -60 3 796 1172 93 33 6 chr4 27719605 27719629 -127910491 - B2_Mm1t SINE B2 -4 189 161 3 796 357 24 0 0 chr4 27719629 27719671 -127910449 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 796 1172 93 33 6 chr4 27719671 27719829 -127910291 - B2_Mm1t SINE B2 -33 160 2 3 796 21 0 0 0 chr4 27719906 27719927 -127910193 + AT_rich Low_complexity Low_complexity 1 21 0 3 796 234 0 0 0 chr4 27721108 27721134 -127908986 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 796 21 36 0 0 chr4 27721260 27721288 -127908832 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 21 71 0 0 chr4 27721384 27721426 -127908694 + AT_rich Low_complexity Low_complexity 1 42 0 3 796 22 35 0 0 chr4 27722750 27722779 -127907341 + AT_rich Low_complexity Low_complexity 1 29 0 3 796 319 172 0 17 chr4 27723061 27723120 -127907000 + L1_Mus1 LINE L1 6054 6111 -456 3 796 1142 71 0 0 chr4 27723223 27723364 -127906756 + B1_Mus2 SINE Alu 4 144 -3 3 796 399 68 0 0 chr4 27723364 27723423 -127906697 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 3 796 721 224 216 39 chr4 27725325 27725580 -127904540 + ORR1C2 LTR MaLR 80 379 -5 3 796 34 65 0 0 chr4 27726799 27726861 -127903259 + AT_rich Low_complexity Low_complexity 1 62 0 3 796 399 89 0 0 chr4 27726899 27726955 -127903165 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 796 709 311 112 55 chr4 27727316 27727802 -127902318 - RMER13A LTR ERVK -376 532 2 3 796 670 349 51 28 chr4 27728022 27728417 -127901703 + Lx8 LINE L1 7040 7443 -30 3 796 566 100 0 0 chr4 27728916 27729006 -127901114 + L1_Mus3 LINE L1 6540 6629 -9 3 796 21 0 0 0 chr4 27729006 27729027 -127901093 + AT_rich Low_complexity Low_complexity 1 21 0 3 796 21 36 0 0 chr4 27729250 27729278 -127900842 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 1878 298 50 47 chr4 27731121 27731808 -127898312 - Lx8 LINE L1 -118 7355 6667 3 796 200 277 0 0 chr4 27731944 27731991 -127898129 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 796 342 299 115 29 chr4 27731995 27732713 -127897407 - L1M2 LINE L1 -683 5617 4833 3 796 356 281 75 9 chr4 27732930 27733203 -127896917 - L1M2 LINE L1 -1631 4512 4214 3 796 244 211 77 0 chr4 27733268 27733320 -127896800 - L1MD LINE L1 -2034 4112 4057 3 796 6873 79 10 5 chr4 27733341 27734278 -127895842 + L1_Mus2 LINE L1 5626 6566 0 3 796 306 151 0 0 chr4 27734403 27734476 -127895644 + (TTTA)n Simple_repeat Simple_repeat 3 75 0 3 796 310 153 48 116 chr4 27734837 27735044 -127895076 - RMER17C LTR ERVK -134 276 84 3 796 483 318 128 59 chr4 27735265 27735687 -127894433 - L1M2 LINE L1 -2540 3603 3155 3 796 727 88 0 16 chr4 27735687 27735814 -127894306 + L1Md_F2 LINE L1 6458 6582 0 3 796 483 318 128 59 chr4 27735814 27736045 -127894075 - L1M2 LINE L1 -2989 3154 2918 3 796 189 0 0 0 chr4 27736045 27736066 -127894054 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 796 483 318 128 59 chr4 27736066 27736357 -127893763 - L1M2 LINE L1 -3226 2917 2595 3 796 497 303 40 80 chr4 27736576 27736777 -127893343 - B3A SINE B2 -4 194 2 3 796 3419 228 31 16 chr4 27736945 27737717 -127892403 - Lx5 LINE L1 -1 7049 6266 3 796 1465 189 141 53 chr4 27737962 27738378 -127891742 - RMER16 LTR ERVK -1 532 1 3 796 360 64 0 0 chr4 27739307 27739354 -127890766 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 796 944 270 127 64 chr4 27740490 27741130 -127888990 - L1M2 LINE L1 -927 5216 4537 3 796 1614 234 128 98 chr4 27741160 27741753 -127888367 - RMER19C LTR ERVK 0 611 1 3 796 1653 142 4 4 chr4 27741899 27742168 -127887952 - Lx LINE L1 -7 6647 6379 3 796 4844 116 14 3 chr4 27742168 27742384 -127887736 + Lx LINE L1 5645 5869 -785 3 796 279 0 0 0 chr4 27742384 27742415 -127887705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 796 4844 116 14 3 chr4 27742415 27742922 -127887198 + Lx LINE L1 5870 6376 -278 3 796 597 311 43 52 chr4 27742934 27743354 -127886766 + L1_Rod LINE L1 5334 5817 -474 3 796 507 365 34 40 chr4 27743379 27743676 -127886444 - Lx9 LINE L1 -459 7185 6891 3 796 26 30 0 0 chr4 27743805 27743838 -127886282 + AT_rich Low_complexity Low_complexity 1 33 0 3 796 26 30 0 0 chr4 27744362 27744395 -127885725 + AT_rich Low_complexity Low_complexity 1 33 0 3 796 446 49 0 16 chr4 27745611 27745673 -127884447 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 796 33154 87 8 2 chr4 27747414 27752920 -127877200 - L1Md_F2 LINE L1 -3 6582 985 3 796 2407 49 29 0 chr4 27752920 27753227 -127876893 + L1Md_F3 LINE L1 6255 6570 -14 3 796 1756 109 0 50 chr4 27753227 27753396 -127876724 - L1Md_F2 LINE L1 -5538 984 828 3 796 28 95 0 0 chr4 27754671 27754755 -127875365 + AT_rich Low_complexity Low_complexity 1 84 0 3 796 7772 151 87 40 chr4 27755071 27756394 -127873726 - L1_Mus2 LINE L1 -5 6561 5108 3 796 338 194 224 0 chr4 27756394 27756492 -127873628 + B3A SINE B2 4 123 -72 3 796 7772 151 87 40 chr4 27756492 27757875 -127872245 - L1_Mus2 LINE L1 -5 5107 3586 3 796 1074 88 14 0 chr4 27757875 27758022 -127872098 - B1_Mur4 SINE Alu -1 149 1 3 796 7772 192 132 61 chr4 27758022 27758182 -127871938 - L1_Mus2 LINE L1 -2298 3585 3434 3 796 6258 190 25 24 chr4 27758184 27758986 -127871134 + Lx2 LINE L1 4979 5788 -89 3 796 3227 56 0 5 chr4 27758986 27759396 -127870724 - L1Md_F2 LINE L1 -12 6570 6163 3 796 6258 169 51 87 chr4 27759396 27759584 -127870536 + Lx2 LINE L1 5784 5875 -1122 3 796 1089 76 14 0 chr4 27759584 27759728 -127870392 + B1_Mus2 SINE Alu 2 147 0 3 796 6258 169 51 87 chr4 27759728 27760790 -127869330 + Lx2 LINE L1 5876 6996 -1 3 796 201 158 0 0 chr4 27761112 27761150 -127868970 + A-rich Low_complexity Low_complexity 4 41 0 3 796 7552 129 10 24 chr4 27761154 27761173 -127868947 - Lx3A LINE L1 0 6981 6966 3 796 365 0 0 22 chr4 27761173 27761219 -127868901 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 796 7552 129 10 24 chr4 27761219 27761664 -127868456 - Lx3A LINE L1 -16 6965 6518 3 796 2509 69 42 0 chr4 27761664 27761996 -127868124 + ORR1A1 LTR MaLR 1 346 0 3 796 7552 129 10 24 chr4 27761996 27762799 -127867321 - Lx3A LINE L1 -464 6517 5731 3 796 15541 119 10 65 chr4 27762780 27763654 -127866466 - Lx3A LINE L1 -399 5487 4733 3 796 1126 89 0 0 chr4 27763654 27763800 -127866320 - B1_Mm SINE Alu 0 147 2 3 796 15541 119 10 65 chr4 27763800 27765762 -127864358 - Lx3A LINE L1 -1154 4732 2806 3 796 182 182 0 35 chr4 27765866 27765923 -127864197 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 796 258 131 0 21 chr4 27766370 27766417 -127863703 - L1MB4 LINE L1 -6433 174 129 3 796 431 333 74 0 chr4 27766825 27766960 -127863160 - RSINE1 SINE B4 -16 149 5 3 796 242 329 99 5 chr4 27767242 27767465 -127862655 - Tigger6a DNA MER2_type -5 1078 835 3 796 21 36 0 0 chr4 27767589 27767617 -127862503 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 2010 153 0 27 chr4 27767669 27768004 -127862116 - ORR1A3 LTR MaLR 0 326 1 3 796 4342 159 44 4 chr4 27768004 27768759 -127861361 - ORR1A3-int LTR MaLR 0 1963 1179 3 796 1410 47 5 5 chr4 27768759 27768975 -127861145 + (TTC)n Simple_repeat Simple_repeat 1 216 0 3 796 3051 74 0 2 chr4 27768994 27769389 -127860731 - L1_Mus1 LINE L1 0 6567 6174 3 796 1174 69 75 0 chr4 27769389 27769548 -127860572 + L1_Mus1 LINE L1 6011 6181 -386 3 796 1598 169 102 25 chr4 27769548 27769863 -127860257 + RMER17A2 LTR ERVK 559 897 -9 3 796 225 0 0 0 chr4 27769868 27769893 -127860227 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 796 192 77 0 0 chr4 27770966 27770992 -127859128 + (T)n Simple_repeat Simple_repeat 1 26 0 3 796 685 92 17 0 chr4 27771168 27771288 -127858832 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 3 796 238 316 51 0 chr4 27771328 27771407 -127858713 - MLT1A1 LTR MaLR -38 370 288 3 796 904 105 28 0 chr4 27771684 27771827 -127858293 - Lx LINE L1 -2 6652 6506 3 796 540 0 0 0 chr4 27774156 27774216 -127855904 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 3 796 663 297 14 5 chr4 27774846 27775059 -127855061 + ID_B1 SINE B4 2 216 -8 3 796 415 252 151 0 chr4 27775229 27775348 -127854772 + B1_Mus2 SINE Alu 9 145 -2 4 796 326 176 0 0 chr4 27775718 27775786 -127854334 + Lx3B LINE L1 6903 6970 -3 4 796 270 250 96 75 chr4 27775795 27775994 -127854126 - Lx8 LINE L1 -11 7462 7260 4 796 780 11 0 0 chr4 27776001 27776090 -127854030 + (GGAGA)n Simple_repeat Simple_repeat 2 90 0 4 796 1004 314 163 12 chr4 27776097 27776695 -127853425 + Lx8 LINE L1 6174 6861 -612 4 796 5293 184 62 17 chr4 27776798 27776833 -127853287 - Lx3B LINE L1 0 6973 6948 4 796 405 0 0 0 chr4 27776833 27776878 -127853242 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 796 5293 184 62 17 chr4 27776878 27777506 -127852614 - Lx3B LINE L1 -26 6947 6293 4 796 5707 44 0 0 chr4 27777506 27778194 -127851926 - L1Md_A LINE L1 0 6582 5895 4 796 5293 184 62 17 chr4 27778194 27778624 -127851496 - Lx3B LINE L1 -681 6292 5830 4 796 296 24 24 0 chr4 27778748 27778789 -127851331 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 796 26 74 0 0 chr4 27779317 27779371 -127850749 + AT_rich Low_complexity Low_complexity 1 54 0 4 796 23 54 0 0 chr4 27779578 27779615 -127850505 + AT_rich Low_complexity Low_complexity 1 37 0 4 796 7727 61 10 1 chr4 27779633 27780663 -127849457 + MTA_Mm-int LTR MaLR 60 1098 0 4 796 3423 25 2 0 chr4 27780663 27781058 -127849062 + MTA_Mm LTR MaLR 1 396 0 4 796 260 272 10 71 chr4 27783783 27783882 -127846238 - L2a LINE L2 -4 3422 3330 4 796 436 352 115 34 chr4 27783988 27784714 -127845406 - Lx8 LINE L1 -68 7405 6605 4 796 610 291 126 31 chr4 27784695 27784911 -127845209 - Lx8 LINE L1 -925 6719 6340 4 796 3186 35 12 31 chr4 27784911 27785330 -127844790 + IAPLTR2a LTR ERVK 1 411 0 4 796 610 276 133 27 chr4 27785330 27785476 -127844644 - Lx8 LINE L1 -1134 6339 6174 4 796 22 56 0 0 chr4 27785523 27785559 -127844561 + AT_rich Low_complexity Low_complexity 1 36 0 4 796 1317 85 17 55 chr4 27786313 27786449 -127843671 - L1VL4 LINE L1 -4 3555 3429 4 796 4164 42 6 2 chr4 27786449 27786956 -127843164 + L1Md_F3 LINE L1 6075 6583 -1 4 796 1317 85 17 55 chr4 27786956 27787056 -127843064 - L1VL4 LINE L1 -131 3428 3328 4 796 546 131 0 0 chr4 27787052 27787136 -127842984 - L1_Mus3 LINE L1 -292 6346 6263 4 99 1757 108 15 4 chr4 27787136 27787405 -127842715 + L1_Mus3 LINE L1 6361 6632 -6 4 797 26 0 0 0 chr4 27787409 27787435 -127842685 + AT_rich Low_complexity Low_complexity 1 26 0 4 797 675 84 0 0 chr4 27787452 27787547 -127842573 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 4 797 3630 88 12 47 chr4 27787547 27788128 -127841992 - L1VL4 LINE L1 -226 3333 2773 4 797 2100 43 0 0 chr4 27788139 27788396 -127841724 - L1Md_A LINE L1 -3 6579 6323 4 797 7990 37 1 0 chr4 27788396 27789343 -127840777 - L1Md_F2 LINE L1 -16 6566 5619 4 797 2521 106 15 8 chr4 27789341 27789742 -127840378 - L1VL4 LINE L1 -781 2778 2375 4 797 32406 27 2 1 chr4 27789740 27794313 -127835807 - L1Md_A LINE L1 0 6582 2004 4 797 303 350 0 16 chr4 27794334 27794517 -127835603 + CT-rich Low_complexity Low_complexity 1 180 0 4 797 8772 106 18 52 chr4 27794901 27795186 -127834934 - L1VL4 LINE L1 -1187 2372 2083 4 797 5175 133 125 16 chr4 27795186 27796109 -127834011 + RLTR13D5 LTR ERVK 1 1023 0 4 797 8772 121 21 32 chr4 27796109 27798219 -127831901 - L1VL4 LINE L1 -1477 2082 6 4 797 24 32 0 0 chr4 27798530 27798561 -127831559 + AT_rich Low_complexity Low_complexity 1 31 0 4 797 1148 349 18 8 chr4 27800082 27800576 -127829544 + RMER15-int LTR ERVL 2059 2557 -2442 4 797 503 374 61 28 chr4 27800599 27801105 -127829015 + Lx8 LINE L1 6234 6756 -717 4 797 294 29 0 0 chr4 27802061 27802096 -127828024 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 797 21 36 0 0 chr4 27802096 27802124 -127827996 + AT_rich Low_complexity Low_complexity 1 28 0 4 797 362 381 24 0 chr4 27802294 27802504 -127827616 + Lx8 LINE L1 6606 6820 -653 4 797 28234 103 60 12 chr4 27802525 27808400 -127821720 - L1_Mus1 LINE L1 0 6567 413 4 797 1572 34 15 5 chr4 27808432 27808638 -127821482 - L1Md_F3 LINE L1 -1 6583 6376 4 797 309 183 0 0 chr4 27808996 27809056 -127821064 + A-rich Low_complexity Low_complexity 1 60 0 4 797 1466 152 83 29 chr4 27809077 27809389 -127820731 + Lx3C LINE L1 6592 6920 -56 4 797 330 276 76 47 chr4 27809397 27809568 -127820552 + L1_Rod LINE L1 2492 2667 -3180 4 797 616 218 198 43 chr4 27809738 27809925 -127820195 + B3 SINE B2 1 216 0 4 797 764 303 81 40 chr4 27809989 27810240 -127819880 + L1_Rod LINE L1 2821 3078 -2769 4 797 252 0 0 0 chr4 27810240 27810268 -127819852 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 797 764 303 81 40 chr4 27810268 27810594 -127819526 + L1_Rod LINE L1 3079 3421 -2426 4 797 510 17 0 0 chr4 27810724 27810783 -127819337 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 797 520 296 31 20 chr4 27810790 27811048 -127819072 - L1_Rod LINE L1 -570 5310 5015 4 797 1216 308 109 11 chr4 27811284 27811814 -127818306 + Lx9 LINE L1 6469 7050 -594 4 797 1160 128 16 26 chr4 27812125 27812282 -127817838 + B2_Mm2 SINE B2 1 157 -38 4 797 393 39 0 0 chr4 27812282 27812333 -127817787 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 4 797 1160 128 16 26 chr4 27812333 27812367 -127817753 + B2_Mm2 SINE B2 158 189 -6 4 797 360 0 0 0 chr4 27812368 27812408 -127817712 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 797 275 308 0 0 chr4 27812480 27812558 -127817562 - Lx9 LINE L1 -297 7347 7270 4 797 21 0 0 0 chr4 27812577 27812598 -127817522 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 4931 101 18 4 chr4 27813554 27814268 -127815852 + Lx LINE L1 5930 6653 -1 4 797 25 31 0 0 chr4 27815188 27815220 -127814900 + AT_rich Low_complexity Low_complexity 1 32 0 4 797 36660 6 24 0 chr4 27815229 27820666 -127809454 + L1Md_A LINE L1 23 5586 -297 4 797 9046 1 0 0 chr4 27820666 27821662 -127808458 + L1Md_A LINE L1 5587 6582 0 4 797 258 32 0 0 chr4 27822106 27822137 -127807983 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 797 197 132 26 0 chr4 27822214 27822252 -127807868 + CT-rich Low_complexity Low_complexity 4 42 0 4 797 1063 117 0 16 chr4 27822254 27822436 -127807684 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 797 733 281 35 5 chr4 27824755 27824955 -127805165 + B3 SINE B2 2 207 -9 4 797 2185 102 16 3 chr4 27825797 27826102 -127804018 - RLTR27 LTR ERVK 0 309 1 4 797 27 0 0 0 chr4 27826462 27826489 -127803631 + AT_rich Low_complexity Low_complexity 1 27 0 4 797 1076 77 14 0 chr4 27828053 27828196 -127801924 + B1_Mm SINE Alu 1 145 -2 4 797 180 111 0 0 chr4 27828197 27828224 -127801896 + (A)n Simple_repeat Simple_repeat 1 27 0 4 797 638 225 50 7 chr4 27828476 27828615 -127801505 + B1_Mus1 SINE Alu 3 147 -1 4 797 357 43 0 0 chr4 27829984 27830031 -127800089 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 797 194 320 18 88 chr4 27830340 27830453 -127799667 - L4 LINE RTE -1211 818 714 4 797 381 102 0 0 chr4 27830987 27831046 -127799074 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 797 297 362 138 28 chr4 27831260 27831405 -127798715 + LTR16A LTR ERVL 1 161 -290 4 797 629 40 0 0 chr4 27831925 27831999 -127798121 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 4 797 1471 70 0 11 chr4 27832011 27832200 -127797920 + B2_Mm1t SINE B2 2 188 -5 4 797 1153 303 63 16 chr4 27833016 27833459 -127796661 + Lx6 LINE L1 6945 7408 -52 4 797 21 0 0 0 chr4 27833471 27833492 -127796628 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 594 306 0 0 chr4 27834803 27834937 -127795183 + B1_Mur1 SINE Alu 3 136 -13 4 797 194 62 0 30 chr4 27834944 27834977 -127795143 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 797 567 325 70 47 chr4 27835424 27835870 -127794250 - L1MA4A LINE L1 -375 5928 5473 4 797 1256 234 85 22 chr4 27836347 27836666 -127793454 + MTC LTR MaLR 2 340 -81 4 797 257 246 0 0 chr4 27837248 27837309 -127792811 - MER52-int LTR ERV1 -1355 5736 5676 4 797 1042 314 61 40 chr4 27838136 27838580 -127791540 - RLTR28B LTR ERVL -28 453 1 4 797 797 205 157 32 chr4 27838580 27838797 -127791323 + MTC LTR MaLR 178 421 0 4 797 689 274 72 0 chr4 27838797 27839034 -127791086 + Lx7 LINE L1 5610 5863 -1833 4 797 536 250 71 0 chr4 27839043 27839183 -127790937 + Lx7 LINE L1 6815 6964 -732 4 797 712 302 39 19 chr4 27839187 27839393 -127790727 - ORR1D1 LTR MaLR -164 210 1 4 797 2144 284 83 21 chr4 27839393 27840105 -127790015 - ORR1D1-int LTR MaLR 0 1370 615 4 797 1228 258 28 94 chr4 27840104 27840498 -127789622 - ORR1D1-int LTR MaLR -1002 368 1 4 797 1035 290 12 58 chr4 27840498 27840827 -127789293 - ORR1D1 LTR MaLR 0 374 61 4 797 1929 228 58 21 chr4 27840829 27841295 -127788825 - Lx3C LINE L1 -121 6855 6373 4 797 14673 176 31 106 chr4 27841281 27842619 -127787501 - L1_Mur1 LINE L1 -724 5162 3809 4 797 2563 77 0 0 chr4 27842619 27842956 -127787164 + IAPLTR4 LTR ERVK 1 337 -8 4 797 14673 176 31 106 chr4 27842956 27845172 -127784948 - L1_Mur1 LINE L1 -724 3808 1563 4 797 402 127 0 0 chr4 27845897 27845968 -127784152 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 797 1123 75 7 0 chr4 27846001 27846148 -127783972 + B1_Mus1 SINE Alu 1 148 0 4 797 230 377 51 51 chr4 27846906 27847043 -127783077 + MTEa LTR MaLR 243 379 0 4 797 260 70 0 23 chr4 27847597 27847641 -127782479 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 797 239 265 36 12 chr4 27848451 27848535 -127781585 + Lx8 LINE L1 6095 6180 -1293 4 797 478 264 54 0 chr4 27848543 27848672 -127781448 + B1_Mur3 SINE Alu 13 148 -1 4 797 245 189 54 0 chr4 27848678 27848752 -127781368 + Lx6 LINE L1 7383 7460 0 4 797 941 120 12 18 chr4 27848805 27848975 -127781145 + Lx3A LINE L1 6808 6976 -5 4 797 246 320 13 0 chr4 27849142 27849217 -127780903 - PB1 SINE Alu -40 87 12 4 797 954 83 22 36 chr4 27849269 27849407 -127780713 + B1_Mus1 SINE Alu 3 138 -10 4 797 3204 48 8 0 chr4 27850305 27850698 -127779422 + MTA_Mm LTR MaLR 1 396 0 4 797 6112 83 18 72 chr4 27850698 27851699 -127778421 + MTA_Mm-int LTR MaLR 1 947 -151 4 797 327 0 0 0 chr4 27851698 27851736 -127778384 + MTB LTR MaLR 363 400 0 4 797 240 35 0 0 chr4 27852201 27852230 -127777890 + (A)n Simple_repeat Simple_repeat 1 29 0 4 797 2892 84 14 2 chr4 27852290 27852706 -127777414 - BGLII LTR ERVK 0 421 1 4 797 256 265 47 24 chr4 27853075 27853160 -127776960 + MIRb SINE MIR 130 216 -52 4 797 6532 77 17 6 chr4 27853164 27854042 -127776078 - L1Md_F2 LINE L1 -2 6580 5693 4 797 241 292 53 63 chr4 27854157 27854195 -127775925 + ORR1E LTR MaLR 266 304 -55 4 797 2203 198 45 191 chr4 27854195 27855038 -127775082 - RMER6D LTR ERVK 0 720 1 4 797 241 292 53 63 chr4 27855038 27855094 -127775026 + ORR1E LTR MaLR 305 359 0 4 797 1198 356 61 53 chr4 27855096 27855971 -127774149 + ORR1E-int LTR MaLR 1 882 -488 4 797 410 323 8 8 chr4 27856043 27856157 -127773963 + ORR1E-int LTR MaLR 1416 1529 -51 4 797 755 320 70 33 chr4 27856157 27856487 -127773633 + ORR1E LTR MaLR 3 344 -15 4 797 28 0 0 0 chr4 27857934 27857962 -127772158 + AT_rich Low_complexity Low_complexity 1 28 0 4 797 24 0 0 0 chr4 27859185 27859209 -127770911 + AT_rich Low_complexity Low_complexity 1 24 0 4 797 340 219 0 0 chr4 27859559 27859623 -127770497 - PB1D9 SINE Alu -54 66 3 5 797 344 255 0 64 chr4 27859647 27859756 -127770364 - ORR1B2-int LTR MaLR -1407 102 1 5 797 1784 200 19 3 chr4 27859756 27860117 -127770003 - ORR1B2 LTR MaLR 0 367 1 5 797 459 52 0 0 chr4 27860180 27860238 -127769882 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 797 23 33 0 0 chr4 27860361 27860391 -127769729 + AT_rich Low_complexity Low_complexity 1 30 0 5 797 495 353 57 13 chr4 27860535 27860851 -127769269 - RMER15-int LTR ERVL -3366 1633 1304 5 797 623 37 12 0 chr4 27860854 27860936 -127769184 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 797 860 305 79 9 chr4 27861023 27861341 -127768779 - RMER15-int LTR ERVL -3823 1176 837 5 797 1320 201 52 23 chr4 27861694 27862000 -127768120 - Lx5 LINE L1 0 7050 6736 5 797 1152 211 95 31 chr4 27862059 27862386 -127767734 - RLTR19C LTR ERVK -158 348 1 5 797 1846 187 116 79 chr4 27862386 27862817 -127767303 - RMER6A LTR ERVK -209 547 77 5 797 1810 104 0 38 chr4 27862817 27863108 -127767012 + L1Md_F2 LINE L1 6301 6580 -2 5 797 1846 187 116 79 chr4 27863108 27863203 -127766917 - RMER6A LTR ERVK -680 76 1 5 797 1962 182 72 20 chr4 27863203 27863345 -127766775 + RMER6C LTR ERVK 225 373 -317 5 797 636 81 0 0 chr4 27863345 27863432 -127766688 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 797 1962 182 72 20 chr4 27863432 27863732 -127766388 + RMER6C LTR ERVK 374 690 0 5 797 23 0 0 0 chr4 27864014 27864037 -127766083 + AT_rich Low_complexity Low_complexity 1 23 0 5 797 226 139 56 0 chr4 27864810 27864846 -127765274 + ORR1A2 LTR MaLR 9 46 -281 5 797 4536 181 108 17 chr4 27864848 27865908 -127764212 + ORR1A2-int LTR MaLR 1 1157 -806 5 797 22 0 0 0 chr4 27865916 27865938 -127764182 + AT_rich Low_complexity Low_complexity 1 22 0 5 797 549 250 0 8 chr4 27866796 27866925 -127763195 - MTD LTR MaLR -282 137 10 5 797 2878 86 5 5 chr4 27867033 27867429 -127762691 - MTA_Mm LTR MaLR 0 396 1 5 797 2364 103 69 5 chr4 27867429 27867820 -127762300 - MTA_Mm-int LTR MaLR 0 1098 683 5 797 17843 70 8 0 chr4 27867997 27870371 -127759749 - L1_Mm LINE L1 -1005 4878 2486 5 797 247 245 60 60 chr4 27870411 27870511 -127759609 + Lx8 LINE L1 6746 6845 -628 5 797 180 217 0 0 chr4 27870580 27870626 -127759494 + C-rich Low_complexity Low_complexity 6 51 0 5 797 288 0 0 0 chr4 27870632 27870664 -127759456 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 797 3995 159 51 11 chr4 27870679 27871390 -127758730 - Lx3C LINE L1 -2 6974 6236 5 797 233 376 118 21 chr4 27871616 27871760 -127758360 + RSINE1 SINE B4 8 165 0 5 797 22 35 0 0 chr4 27871760 27871789 -127758331 + AT_rich Low_complexity Low_complexity 1 29 0 5 797 1335 131 127 0 chr4 27874642 27874886 -127755234 - Lx LINE L1 -3 6651 6377 5 797 1310 149 9 0 chr4 27874883 27875105 -127755015 - L1_Mm LINE L1 -367 5516 5293 5 797 253 161 63 16 chr4 27875320 27875446 -127754674 + (CAGAGA)n Simple_repeat Simple_repeat 2 133 0 5 797 393 176 0 0 chr4 27876893 27876967 -127753153 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 797 26 0 0 0 chr4 27877796 27877822 -127752298 + AT_rich Low_complexity Low_complexity 1 26 0 5 797 213 220 0 0 chr4 27878032 27878082 -127752038 + T-rich Low_complexity Low_complexity 4 53 0 5 797 276 304 139 0 chr4 27878458 27878537 -127751583 - B1F1 SINE Alu -59 90 1 5 797 615 230 70 28 chr4 27878940 27879083 -127751037 - B1_Mur4 SINE Alu 0 150 2 5 797 267 252 46 83 chr4 27878990 27879098 -127751022 - MT2B LTR ERVL -345 256 153 5 797 3355 33 5 0 chr4 27879356 27879750 -127750370 - MTA_Mm LTR MaLR 0 396 1 5 797 21 0 0 0 chr4 27880644 27880665 -127749455 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 3900 46 0 0 chr4 27880730 27881204 -127748916 + L1Md_T LINE L1 6109 6582 0 5 797 584 314 21 5 chr4 27881905 27882094 -127748026 - B3 SINE B2 -12 204 13 5 797 338 206 110 0 chr4 27882256 27882329 -127747791 + HAL1-3A_ME LINE L1 1975 2055 -803 5 797 23 0 0 0 chr4 27883230 27883253 -127746867 + AT_rich Low_complexity Low_complexity 1 23 0 5 797 655 322 5 37 chr4 27884452 27884639 -127745481 + B3 SINE B2 2 182 -34 5 797 26 30 0 0 chr4 27885481 27885514 -127744606 + AT_rich Low_complexity Low_complexity 1 33 0 5 797 267 109 73 0 chr4 27885983 27886038 -127744082 + MusHAL1 LINE L1 543 601 -2753 5 797 1202 210 19 54 chr4 27886041 27886354 -127743766 + Lx2B LINE L1 6610 6931 -45 5 797 29 0 0 0 chr4 27886369 27886398 -127743722 + AT_rich Low_complexity Low_complexity 1 29 0 5 797 424 375 44 55 chr4 27886885 27887089 -127743031 + B4A SINE B4 3 213 -79 5 797 194 62 31 0 chr4 27887089 27887121 -127742999 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 797 424 375 44 55 chr4 27887121 27887209 -127742911 + B4A SINE B4 214 292 0 5 797 603 177 0 0 chr4 27887226 27887390 -127742730 + (CA)n Simple_repeat Simple_repeat 2 165 0 5 797 29 60 0 0 chr4 27887718 27887768 -127742352 + AT_rich Low_complexity Low_complexity 1 50 0 5 797 35 54 0 0 chr4 27888602 27888658 -127741462 + AT_rich Low_complexity Low_complexity 1 56 0 5 797 261 83 0 0 chr4 27888951 27888987 -127741133 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 797 476 152 8 0 chr4 27889321 27889439 -127740681 + CT-rich Low_complexity Low_complexity 2 120 0 5 797 25 31 0 0 chr4 27889660 27889692 -127740428 + AT_rich Low_complexity Low_complexity 1 32 0 5 797 21 0 0 0 chr4 27890309 27890330 -127739790 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 190 116 47 0 chr4 27892709 27892752 -127737368 + A-rich Low_complexity Low_complexity 3 47 0 5 797 23 68 0 0 chr4 27893106 27893150 -127736970 + AT_rich Low_complexity Low_complexity 1 44 0 5 797 24 77 0 0 chr4 27894485 27894537 -127735583 + AT_rich Low_complexity Low_complexity 1 52 0 5 797 225 65 0 0 chr4 27894735 27894766 -127735354 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 797 22 0 0 0 chr4 27894964 27894986 -127735134 + AT_rich Low_complexity Low_complexity 1 22 0 5 797 200 204 0 22 chr4 27895460 27895505 -127734615 + CT-rich Low_complexity Low_complexity 2 45 0 5 797 303 93 0 0 chr4 27898972 27899015 -127731105 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 797 330 205 38 13 chr4 27899070 27899084 -127731036 + B4 SINE B4 70 85 -207 5 797 433 106 0 0 chr4 27899084 27899150 -127730970 + B1_Mus1 SINE Alu 2 67 -81 5 797 365 230 9 9 chr4 27899160 27899274 -127730846 + Lx9 LINE L1 7531 7644 0 5 797 3987 103 31 10 chr4 27900080 27900696 -127729424 - Lx3_Mus LINE L1 -19 6990 6362 5 797 354 344 31 58 chr4 27900825 27901050 -127729070 + MIR SINE MIR 32 250 -12 5 797 252 62 0 0 chr4 27901069 27901117 -127729003 - L1_Mus4 LINE L1 0 6636 6589 5 797 931 194 31 22 chr4 27901177 27901404 -127728716 + Lx2B LINE L1 6772 7000 0 5 797 21 57 0 0 chr4 27902038 27902073 -127728047 + AT_rich Low_complexity Low_complexity 1 35 0 5 797 243 61 0 0 chr4 27902194 27902227 -127727893 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 797 353 102 0 17 chr4 27902236 27902296 -127727824 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 797 592 288 69 45 chr4 27902301 27902592 -127727528 + Lx9 LINE L1 6922 7219 -425 5 797 22 35 0 0 chr4 27903076 27903105 -127727015 + AT_rich Low_complexity Low_complexity 1 29 0 5 797 242 227 53 13 chr4 27903189 27903265 -127726855 - MIR SINE MIR -72 190 112 5 797 240 35 0 0 chr4 27903330 27903359 -127726761 + (TTA)n Simple_repeat Simple_repeat 2 30 0 5 797 618 256 0 0 chr4 27903363 27903496 -127726624 - B1_Mus1 SINE Alu -7 141 9 5 797 368 355 57 64 chr4 27903621 27903919 -127726201 - ORR1E LTR MaLR -14 345 50 5 797 481 165 57 0 chr4 27904984 27905142 -127724978 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 5 797 189 0 0 0 chr4 27905186 27905207 -127724913 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 797 1220 219 138 15 chr4 27905629 27905962 -127724158 + Lx9 LINE L1 7110 7483 -161 5 797 594 75 0 0 chr4 27906210 27906290 -127723830 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 797 936 51 0 0 chr4 27906802 27906920 -127723200 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 5 797 22 0 0 0 chr4 27907353 27907375 -127722745 + AT_rich Low_complexity Low_complexity 1 22 0 5 797 789 116 88 31 chr4 27908950 27909110 -127721010 + Lx2 LINE L1 6829 6997 0 5 797 688 32 21 11 chr4 27909112 27909207 -127720913 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 5 797 279 113 0 0 chr4 27910804 27910857 -127719263 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 5 797 279 0 0 0 chr4 27910858 27910889 -127719231 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 797 302 269 130 0 chr4 27912844 27912952 -127717168 + B1F1 SINE Alu 12 133 -16 5 797 28 29 0 0 chr4 27913327 27913362 -127716758 + AT_rich Low_complexity Low_complexity 1 35 0 5 797 479 58 0 0 chr4 27914589 27914658 -127715462 + L1_Mus1 LINE L1 6499 6567 0 5 797 22 0 0 0 chr4 27915593 27915615 -127714505 + AT_rich Low_complexity Low_complexity 1 22 0 5 797 669 76 0 0 chr4 27915991 27916083 -127714037 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 797 2175 104 6 3 chr4 27916399 27916717 -127713403 + Lx3A LINE L1 6658 6976 -5 5 797 207 0 0 0 chr4 27916720 27916743 -127713377 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 797 21 0 0 0 chr4 27917263 27917284 -127712836 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 212 0 36 0 chr4 27917348 27917376 -127712744 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 797 414 0 0 0 chr4 27917742 27917788 -127712332 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 99 542 306 56 29 chr4 27918121 27918461 -127711659 - L1MA4 LINE L1 -425 5875 5527 5 798 376 345 64 8 chr4 27919086 27919320 -127710800 + L1M4 LINE L1 2681 2927 -3219 5 798 24 0 0 0 chr4 27919870 27919894 -127710226 + AT_rich Low_complexity Low_complexity 1 24 0 5 798 207 0 0 0 chr4 27920092 27920115 -127710005 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 798 1090 69 7 0 chr4 27920117 27920261 -127709859 - B1_Mm SINE Alu 0 147 3 6 798 2366 240 60 2 chr4 27920501 27921047 -127709073 + Lx7 LINE L1 6743 7320 -376 6 798 1263 273 39 25 chr4 27921053 27921410 -127708710 + ORR1D2 LTR MaLR 9 370 0 6 798 250 59 27 68 chr4 27921932 27922005 -127708115 + T-rich Low_complexity Low_complexity 2 71 0 6 798 1067 149 22 26 chr4 27922012 27922239 -127707881 + Lx2A LINE L1 6780 7005 -3 6 798 2467 39 7 10 chr4 27922346 27922655 -127707465 - L1Md_F3 LINE L1 -1 6583 6276 6 798 925 252 9 5 chr4 27922837 27923060 -127707060 + URR1B DNA MER1_type 1 224 -1 6 798 14205 31 0 0 chr4 27924053 27926405 -127703715 - L1Md_T LINE L1 -1 6581 4229 6 798 605 303 68 21 chr4 27926546 27926826 -127703294 + Lx8 LINE L1 6258 6550 -923 6 798 1499 320 74 37 chr4 27926829 27927617 -127702503 + Lx8 LINE L1 6652 7468 -5 6 798 540 30 0 0 chr4 27928240 27928306 -127701814 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 798 22 0 0 0 chr4 27929816 27929838 -127700282 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 349 364 95 49 chr4 27929901 27929952 -127700168 - HAL1 LINE L1 -1570 937 881 6 798 712 238 80 37 chr4 27929952 27930140 -127699980 + B3 SINE B2 2 197 -19 6 798 349 364 95 49 chr4 27930140 27930331 -127699789 - HAL1 LINE L1 -1627 880 685 6 798 29957 27 0 0 chr4 27930667 27934244 -127695876 + L1Md_T LINE L1 2009 5586 -297 6 798 8382 33 0 0 chr4 27934244 27935238 -127694882 + L1Md_T LINE L1 5587 6580 -2 6 798 743 308 42 44 chr4 27935244 27935652 -127694468 - L1_Rod LINE L1 -59 5788 5382 6 798 1415 281 98 47 chr4 27935654 27935995 -127694125 - Lx6 LINE L1 -5 7455 7090 6 798 447 19 0 0 chr4 27935995 27936047 -127694073 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 798 1415 281 98 47 chr4 27936047 27936305 -127693815 - Lx6 LINE L1 -371 7089 6825 6 798 947 324 34 29 chr4 27936293 27936996 -127693124 - L1M2 LINE L1 -463 5417 4709 6 798 244 324 45 36 chr4 27936996 27937108 -127693012 + MLT1C LTR MaLR 64 176 -291 6 798 294 366 48 21 chr4 27937360 27937505 -127692615 + B1F SINE Alu 1 149 0 6 798 316 194 16 0 chr4 27937595 27937657 -127692463 + RMER13A LTR ERVK 359 421 -439 6 798 1189 183 161 46 chr4 27938054 27938228 -127691892 + RMER17C LTR ERVK 3 182 -228 6 798 540 0 0 0 chr4 27938228 27938288 -127691832 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 798 1189 183 161 46 chr4 27938288 27938479 -127691641 + RMER17C LTR ERVK 183 410 0 6 798 23 33 0 0 chr4 27939026 27939056 -127691064 + AT_rich Low_complexity Low_complexity 1 30 0 6 798 191 61 30 0 chr4 27939240 27939273 -127690847 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 798 253 251 11 64 chr4 27939395 27939582 -127690538 - Lx9 LINE L1 -4 7640 7464 6 798 606 93 0 0 chr4 27939582 27939668 -127690452 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 798 319 274 10 0 chr4 27939671 27939773 -127690347 - L1_Rod LINE L1 -6503 669 567 6 798 853 195 103 9 chr4 27939764 27939987 -127690133 + Lx9 LINE L1 7352 7595 -49 6 798 601 326 65 58 chr4 27940351 27940660 -127689460 + MTEa LTR MaLR 18 328 -51 6 798 234 294 202 13 chr4 27940680 27940918 -127689202 + Lx9 LINE L1 5706 5988 -1656 6 798 344 71 18 0 chr4 27941069 27941125 -127688995 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 6 798 376 342 13 0 chr4 27941290 27941445 -127688675 + Lx9 LINE L1 6307 6463 -1181 6 798 1210 252 93 13 chr4 27941447 27941845 -127688275 + Lx9 LINE L1 7215 7644 0 6 798 240 289 121 30 chr4 27941899 27942031 -127688089 + Lx8 LINE L1 6246 6389 -1084 6 798 459 331 63 51 chr4 27942067 27942382 -127687738 + Lx8 LINE L1 6665 6983 -490 6 798 598 299 0 26 chr4 27942382 27942533 -127687587 + B1_Mur2 SINE Alu 1 147 -2 6 798 327 179 0 0 chr4 27943260 27943327 -127686793 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 798 369 0 0 0 chr4 27943915 27943956 -127686164 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 798 3376 28 2 2 chr4 27944597 27944992 -127685128 - MTA_Mm LTR MaLR 0 396 2 6 798 1963 189 174 14 chr4 27945384 27945889 -127684231 + RMER6C LTR ERVK 1 586 -104 6 798 1238 160 67 12 chr4 27946080 27946320 -127683800 + Lx2 LINE L1 6745 6997 0 6 798 2510 88 0 19 chr4 27946901 27947273 -127682847 + L1Md_F2 LINE L1 6218 6582 0 6 798 458 291 60 73 chr4 27947435 27947531 -127682589 - MLT1D LTR MaLR -3 502 415 6 798 5099 146 44 6 chr4 27947531 27948397 -127681723 + Lx2 LINE L1 6099 6997 0 6 798 458 291 60 73 chr4 27948397 27948548 -127681572 - MLT1D LTR MaLR -91 414 258 6 798 617 249 9 160 chr4 27948528 27948753 -127681367 - B3A SINE B2 -1 194 4 6 798 342 0 0 0 chr4 27948931 27948969 -127681151 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 798 720 157 19 3 chr4 27948969 27949261 -127680859 + GA-rich Low_complexity Low_complexity 1 296 0 6 798 1132 181 5 29 chr4 27949412 27949617 -127680503 + URR1B DNA MER1_type 6 205 -20 6 798 22410 19 0 0 chr4 27949641 27952266 -127677854 - L1Md_T LINE L1 -489 5394 2770 6 798 1315 26 0 0 chr4 27952262 27952414 -127677706 + L1Md_T LINE L1 5435 5586 -297 6 798 7996 56 0 0 chr4 27952414 27953410 -127676710 + L1Md_T LINE L1 5587 6582 0 6 798 513 280 97 80 chr4 27953431 27953668 -127676452 - MLT2D LTR ERVL -173 241 1 6 798 22 0 0 0 chr4 27954099 27954121 -127675999 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 812 254 61 0 chr4 27954264 27954445 -127675675 + B3 SINE B2 14 205 -11 6 798 587 144 27 63 chr4 27954453 27954564 -127675556 - RLTR21 LTR ERVK 0 1572 1466 6 798 882 198 11 74 chr4 27954558 27954733 -127675387 - RLTR21 LTR ERVK -1408 164 1 6 798 354 184 0 0 chr4 27955180 27955256 -127674864 + CT-rich Low_complexity Low_complexity 5 80 0 6 798 5264 197 43 17 chr4 27955268 27957172 -127672948 - Lx2B LINE L1 -160 6840 5002 6 798 1169 207 0 8 chr4 27957183 27957427 -127672693 + Lx2B LINE L1 4764 5005 -881 6 798 325 127 73 0 chr4 27957420 27957475 -127672645 - Lx2B LINE L1 -1102 4784 4726 6 798 2573 200 23 38 chr4 27957475 27958143 -127671977 + RLTR31_Mm LTR ERVK 1 561 0 6 798 1829 139 0 10 chr4 27958143 27958448 -127671672 - Lx2B LINE L1 -1155 4722 4421 6 798 394 33 0 32 chr4 27958486 27958548 -127671572 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6 798 1776 78 85 8 chr4 27958548 27958806 -127671314 - L1Md_F2 LINE L1 -40 6542 6265 6 798 511 208 0 34 chr4 27958776 27958937 -127671183 - L1_Mur2 LINE L1 -1021 2893 2744 6 798 272 333 15 118 chr4 27959290 27959426 -127670694 - B1F SINE Alu -22 127 6 6 798 36741 4 0 0 chr4 27960273 27964836 -127665284 - L1Md_A LINE L1 -482 5401 839 6 798 6253 3 0 0 chr4 27964836 27965529 -127664591 + L1Md_A LINE L1 5890 6582 0 6 798 362 283 60 55 chr4 27966196 27966524 -127663596 - L1MEf LINE L1 -4728 2374 1938 6 798 21 71 0 0 chr4 27966642 27966684 -127663436 + AT_rich Low_complexity Low_complexity 1 42 0 6 798 784 182 6 6 chr4 27966803 27966980 -127663140 + CT-rich Low_complexity Low_complexity 4 180 0 6 798 259 308 10 52 chr4 27967006 27967102 -127663018 - PB1D7 SINE Alu -6 114 23 6 798 327 25 0 0 chr4 27967317 27967357 -127662763 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 798 696 288 78 62 chr4 27967852 27968159 -127661961 + Lx6 LINE L1 7085 7396 -64 6 798 283 191 8 16 chr4 27968189 27968317 -127661803 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 6 798 443 202 12 0 chr4 27968328 27968501 -127661619 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 6 798 21 0 0 0 chr4 27969025 27969046 -127661074 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 21 0 0 0 chr4 27969654 27969675 -127660445 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 1030 241 83 91 chr4 27969847 27970244 -127659876 - ORR1B1 LTR MaLR 0 394 1 6 798 5390 212 73 5 chr4 27970244 27970603 -127659517 - ORR1B1-int LTR MaLR 0 1509 1115 6 798 725 41 10 0 chr4 27970603 27970700 -127659420 + (TC)n Simple_repeat Simple_repeat 2 99 0 6 798 5390 212 73 5 chr4 27970700 27971647 -127658473 - ORR1B1-int LTR MaLR -395 1114 114 6 798 2111 198 0 2 chr4 27971647 27972068 -127658052 + L1_Mur1 LINE L1 4782 5201 -685 6 798 448 238 35 11 chr4 27972071 27972199 -127657921 - ORR1B1-int LTR MaLR -967 131 1 6 798 1582 222 53 16 chr4 27972199 27972579 -127657541 - ORR1B1 LTR MaLR 0 394 1 6 798 3635 95 14 10 chr4 27972806 27973325 -127656795 - L1_Mus4 LINE L1 -462 6174 5654 6 798 2547 136 34 11 chr4 27973325 27973772 -127656348 + L1_Mus4 LINE L1 6174 6630 -6 6 798 305 324 38 16 chr4 27974001 27974338 -127655782 + L1MEg LINE L1 2030 2525 -4324 6 798 5529 281 57 21 chr4 27974448 27976609 -127653511 + Lx6 LINE L1 5206 7447 -13 6 798 465 227 89 19 chr4 27976734 27976891 -127653229 + L1_Mur3 LINE L1 4485 4652 -1228 6 798 567 335 53 24 chr4 27976937 27977350 -127652770 - L1M3 LINE L1 -442 5726 5302 6 798 195 229 0 0 chr4 27977434 27977495 -127652625 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 798 262 330 8 132 chr4 27977496 27977625 -127652495 - RSINE1 SINE B4 0 165 53 6 798 315 300 122 26 chr4 27977681 27977992 -127652128 - L1M3 LINE L1 -941 5199 4859 6 798 29 28 0 0 chr4 27978930 27978966 -127651154 + AT_rich Low_complexity Low_complexity 1 36 0 6 798 372 275 98 54 chr4 27979032 27979236 -127650884 - Lx8 LINE L1 -2 7471 7259 6 798 315 407 25 15 chr4 27980130 27980327 -127649793 - Lx8 LINE L1 -145 7328 7130 6 798 1285 318 60 18 chr4 27980465 27980980 -127649140 - Lx9 LINE L1 -693 6951 6415 6 798 820 277 55 48 chr4 27981346 27981619 -127648501 + MTD LTR MaLR 1 275 -144 6 798 228 255 121 0 chr4 27981635 27981776 -127648344 - L1_Mur3 LINE L1 -461 5419 5262 6 798 354 45 0 0 chr4 27981776 27981820 -127648300 + (T)n Simple_repeat Simple_repeat 1 44 0 6 798 31915 83 1 53 chr4 27981870 27987821 -127642299 + L1Md_F2 LINE L1 392 6012 -572 6 798 6854 38 0 0 chr4 27987823 27988647 -127641473 + L1Md_A LINE L1 5759 6582 0 6 798 4301 66 7 11 chr4 27988648 27989216 -127640904 + L1Md_F2 LINE L1 6005 6570 -12 6 798 2438 44 3 0 chr4 27989216 27989511 -127640609 + L1Md_F2 LINE L1 5291 5586 -297 6 798 7597 57 3 5 chr4 27989511 27990519 -127639601 + L1Md_F2 LINE L1 5587 6582 0 6 798 497 304 40 24 chr4 27990545 27990794 -127639326 - L1_Mur3 LINE L1 -677 5203 4951 6 798 356 256 16 0 chr4 27990984 27991105 -127639015 + Lx8 LINE L1 5749 5871 -1602 6 798 22 35 0 0 chr4 27991398 27991427 -127638693 + AT_rich Low_complexity Low_complexity 1 29 0 6 798 23 0 0 0 chr4 27992427 27992450 -127637670 + AT_rich Low_complexity Low_complexity 1 23 0 6 798 1368 289 84 23 chr4 27992827 27993384 -127636736 + Lx6 LINE L1 122 712 -7016 6 798 2698 197 204 20 chr4 27993440 27994249 -127635871 + Lx6 LINE L1 4338 5295 -585 6 798 887 235 17 21 chr4 27995509 27995744 -127634376 + Lx6 LINE L1 5265 5498 -382 6 798 2246 199 158 36 chr4 27995745 27996385 -127633735 + RMER6D LTR ERVK 2 719 -1 6 798 2109 221 30 15 chr4 27996385 27996477 -127633643 - RLTR16 LTR ERVK 0 505 415 6 798 423 0 0 0 chr4 27996477 27996524 -127633596 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 798 2109 221 30 15 chr4 27996524 27996873 -127633247 - RLTR16 LTR ERVK -91 414 55 6 798 2987 142 123 2 chr4 27996873 27997394 -127632726 + MT2B2 LTR ERVL 1 584 0 6 798 2109 292 23 78 chr4 27997394 27997452 -127632668 - RLTR16 LTR ERVK -452 108 35 6 798 967 190 66 33 chr4 27997452 27997664 -127632456 - LSU-rRNA_Hsa rRNA rRNA -3156 1879 1661 6 798 273 143 82 0 chr4 27997667 27997716 -127632404 - RLTR16 LTR ERVK -449 56 4 6 798 2833 255 20 21 chr4 27997723 27998683 -127631437 + Lx6 LINE L1 5490 6455 -1005 6 798 4205 176 47 21 chr4 27998790 27999103 -127631017 - Lx4A LINE L1 -3 7055 6753 6 798 3342 35 5 0 chr4 27999103 27999497 -127630623 + MTA_Mm LTR MaLR 1 396 0 6 798 4205 176 47 21 chr4 27999497 27999993 -127630127 - Lx4A LINE L1 -306 6752 6225 6 798 2435 127 19 10 chr4 28000000 28000415 -127629705 - Lx4A LINE L1 -871 6187 5769 1 798 26 82 0 0 chr4 28000424 28000485 -127629635 + AT_rich Low_complexity Low_complexity 1 61 0 2 798 266 173 0 0 chr4 28000562 28000614 -127629506 + Lx4A LINE L1 5935 5986 -1072 3 798 1142 121 22 0 chr4 28000610 28000808 -127629312 - Lx4A LINE L1 -1270 5788 5572 1 798 1880 185 98 5 chr4 28001093 28001490 -127628630 + L1_Mur2 LINE L1 5114 5547 -330 4 798 1067 178 201 78 chr4 28002019 28002312 -127627808 + ORR1A4 LTR MaLR 1 329 0 5 798 405 0 0 0 chr4 28002618 28002663 -127627457 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 798 30 27 0 0 chr4 28002880 28002917 -127627203 + AT_rich Low_complexity Low_complexity 1 37 0 7 798 1025 141 0 97 chr4 28003529 28003725 -127626395 + ORR1A2 LTR MaLR 1 177 -150 8 798 2403 245 74 55 chr4 28003824 28005414 -127624706 + L1_Rod LINE L1 451 2081 -3766 9 798 484 268 26 53 chr4 28005704 28005893 -127624227 + RLTR23 LTR ERV1 247 430 0 1 798 276 170 0 0 chr4 28005941 28005994 -127624126 + (CAG)n Simple_repeat Simple_repeat 1 53 0 1 798 2183 261 30 49 chr4 28006003 28006916 -127623204 + L1_Rod LINE L1 3657 4573 -1567 9 798 917 0 19 0 chr4 28006935 28007043 -127623077 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 1 798 1212 243 144 16 chr4 28007079 28007594 -127622526 - L1_Rod LINE L1 -3940 1907 1327 1 798 3013 62 88 0 chr4 28008642 28009042 -127621078 - L1Md_F2 LINE L1 0 5883 5449 1 798 5714 47 0 8 chr4 28009042 28009757 -127620363 + L1Md_F2 LINE L1 5874 6582 0 1 798 405 272 50 12 chr4 28010299 28010459 -127619661 + Lx7 LINE L1 7515 7680 -16 1 798 337 339 74 65 chr4 28011260 28011555 -127618565 + RLTR12B LTR ERVK 10 310 -258 1 798 1546 335 45 18 chr4 28011853 28012565 -127617555 - Lx8 LINE L1 -281 7192 6462 1 798 4075 137 8 89 chr4 28013713 28014507 -127615613 - L1_Mus4 LINE L1 0 6636 5908 1 798 3464 126 27 2 chr4 28014509 28015035 -127615085 + L1_Mus4 LINE L1 5345 5883 0 1 798 282 56 0 0 chr4 28015149 28015185 -127614935 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 798 316 341 12 0 chr4 28015306 28015391 -127614729 - RSINE1 SINE B4 -78 87 2 2 798 24 0 0 0 chr4 28015678 28015702 -127614418 + AT_rich Low_complexity Low_complexity 1 24 0 2 798 279 0 0 0 chr4 28015928 28015959 -127614161 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 798 186 143 0 0 chr4 28016592 28016627 -127613493 + (T)n Simple_repeat Simple_repeat 1 35 0 2 798 1501 167 43 46 chr4 28016629 28016956 -127613164 - Lx2 LINE L1 -1 6996 6671 2 798 1896 115 0 28 chr4 28016958 28017245 -127612875 + Lx2 LINE L1 6387 6665 -332 2 798 332 328 114 5 chr4 28017878 28018080 -127612040 + L1M4 LINE L1 4182 4405 -1741 2 798 858 275 20 24 chr4 28018104 28018357 -127611763 + Lx7 LINE L1 6349 6600 -1096 2 798 204 366 48 8 chr4 28018643 28018767 -127611353 + L3 LINE CR1 4071 4199 -290 2 798 256 296 209 58 chr4 28018880 28019052 -127611068 + B3A SINE B2 1 198 0 2 798 21 0 0 0 chr4 28019742 28019763 -127610357 + AT_rich Low_complexity Low_complexity 1 21 0 2 798 794 307 60 60 chr4 28021568 28021987 -127608133 - MTD LTR MaLR 0 419 1 3 798 421 347 158 4 chr4 28022468 28022740 -127607380 + MLT1B LTR MaLR 1 314 -76 3 798 3883 39 0 0 chr4 28023474 28023942 -127606178 - L1Md_F3 LINE L1 -467 6117 5650 3 798 3810 34 8 13 chr4 28023942 28024415 -127605705 + L1Md_F3 LINE L1 6114 6584 0 3 798 1670 236 60 71 chr4 28025402 28025680 -127604440 - RMER6C LTR ERVK -4 716 454 3 798 5420 131 0 4 chr4 28025680 28026508 -127603612 - Lx LINE L1 -1 6653 5829 3 798 1670 226 176 25 chr4 28026508 28027025 -127603095 - RMER6C LTR ERVK -83 607 1 3 798 1145 281 41 22 chr4 28027453 28027770 -127602350 + MTD LTR MaLR 29 351 -68 3 798 257 355 82 82 chr4 28027750 28028078 -127602042 + ORR1A3-int LTR MaLR 1125 1452 -511 3 798 885 270 78 99 chr4 28028173 28028597 -127601523 + MTD LTR MaLR 5 419 0 3 798 8594 24 0 0 chr4 28030461 28031462 -127598658 + L1Md_T LINE L1 4586 5586 -297 3 798 8226 41 4 0 chr4 28031463 28032454 -127597666 + L1Md_T LINE L1 5588 6582 0 3 798 698 269 75 37 chr4 28032514 28032808 -127597312 + Lx9 LINE L1 6836 7140 -504 3 798 36 0 0 0 chr4 28032808 28032844 -127597276 + AT_rich Low_complexity Low_complexity 1 36 0 4 798 1005 113 28 0 chr4 28032844 28032986 -127597134 - B1_Mm SINE Alu 0 147 2 4 798 393 58 0 0 chr4 28033245 28033297 -127596823 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 798 33 56 0 0 chr4 28033374 28033428 -127596692 + AT_rich Low_complexity Low_complexity 1 54 0 4 798 398 120 0 24 chr4 28033792 28033877 -127596243 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 4 798 268 298 125 37 chr4 28034427 28034563 -127595557 + LTR41B LTR ERVL 504 651 -107 4 798 488 352 72 49 chr4 28034640 28034864 -127595256 - MER68 LTR ERVL -242 321 81 4 798 1118 43 152 47 chr4 28034864 28035035 -127595085 + B2_Mm1t SINE B2 1 189 -4 4 798 488 352 72 49 chr4 28035035 28035073 -127595047 - MER68 LTR ERVL -483 80 53 4 798 22 0 0 0 chr4 28035266 28035288 -127594832 + AT_rich Low_complexity Low_complexity 1 22 0 4 798 366 23 0 0 chr4 28035828 28035871 -127594249 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 798 306 50 0 0 chr4 28036613 28036653 -127593467 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 798 569 310 104 32 chr4 28038159 28038409 -127591711 - MTEa LTR MaLR -110 269 2 5 798 404 267 220 0 chr4 28038416 28038566 -127591554 + URR1A DNA MER1_type 1 183 -43 5 798 558 309 98 33 chr4 28038920 28039194 -127590926 + B4 SINE B4 1 292 0 5 798 180 97 0 0 chr4 28039488 28039519 -127590601 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 798 1305 194 140 0 chr4 28039603 28039881 -127590239 - RMER1B Other Other -156 910 594 5 798 381 369 50 52 chr4 28039920 28040344 -127589776 - RMER1C Other Other -522 820 163 5 798 8685 139 19 12 chr4 28040536 28041682 -127588438 - Lx2 LINE L1 0 6997 5849 5 798 2730 88 31 3 chr4 28041682 28042071 -127588049 + MTB LTR MaLR 1 400 0 5 798 8685 144 16 12 chr4 28042071 28042615 -127587505 - Lx2 LINE L1 -35 5848 5297 5 798 422 299 97 35 chr4 28043208 28043527 -127586593 - L1MA9 LINE L1 -1 6311 5973 5 798 275 0 29 0 chr4 28044221 28044256 -127585864 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 798 236 243 41 41 chr4 28044376 28044449 -127585671 - ID4_ SINE ID -10 73 1 6 798 402 21 0 0 chr4 28045217 28045264 -127584856 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 798 1138 69 0 0 chr4 28045266 28045410 -127584710 - B1_Mus1 SINE Alu -4 144 1 6 798 5910 45 4 0 chr4 28045545 28046273 -127583847 - L1Md_F2 LINE L1 -11 6571 5841 6 798 452 18 0 17 chr4 28048050 28048108 -127582012 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 6 798 1093 74 0 0 chr4 28048108 28048243 -127581877 - B1_Mus1 SINE Alu -12 136 2 6 798 225 65 0 0 chr4 28049123 28049154 -127580966 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 99 2854 75 40 12 chr4 28049168 28049571 -127580549 - L1Md_F2 LINE L1 -1 6581 6168 6 799 861 62 0 0 chr4 28049571 28049678 -127580442 + L1_Mm LINE L1 5134 5240 -643 6 799 25 75 0 0 chr4 28049871 28049924 -127580196 + AT_rich Low_complexity Low_complexity 1 53 0 7 799 22 0 0 0 chr4 28050023 28050045 -127580075 + AT_rich Low_complexity Low_complexity 1 22 0 7 799 37 62 0 0 chr4 28050112 28050177 -127579943 + AT_rich Low_complexity Low_complexity 1 65 0 7 799 25 65 0 0 chr4 28050228 28050274 -127579846 + AT_rich Low_complexity Low_complexity 1 46 0 7 799 21 36 0 0 chr4 28050585 28050613 -127579507 + AT_rich Low_complexity Low_complexity 1 28 0 7 799 223 182 0 0 chr4 28051007 28051051 -127579069 + A-rich Low_complexity Low_complexity 1 44 0 7 799 540 247 56 22 chr4 28051438 28051623 -127578497 - B3 SINE B2 -11 184 2 7 799 275 224 105 62 chr4 28051628 28051790 -127578330 + L1MA7 LINE L1 6104 6272 -19 7 799 1130 68 0 7 chr4 28051804 28051951 -127578169 + B1_Mus1 SINE Alu 2 147 -1 7 799 879 10 0 0 chr4 28053349 28053449 -127576671 + (TTCTC)n Simple_repeat Simple_repeat 4 103 0 7 799 28 0 0 0 chr4 28053449 28053477 -127576643 + AT_rich Low_complexity Low_complexity 1 28 0 8 799 303 28 0 0 chr4 28053481 28053517 -127576603 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 8 799 5517 129 23 24 chr4 28053517 28054441 -127575679 - Lx3A LINE L1 -15 6966 6044 8 799 399 221 0 0 chr4 28054484 28054561 -127575559 - Lx7 LINE L1 -78 7618 7542 8 799 1578 286 24 53 chr4 28054632 28055123 -127574997 - RMER19C LTR ERVK 0 611 135 8 799 296 169 15 30 chr4 28055149 28055216 -127574904 - Lx7 LINE L1 -253 7443 7378 8 799 199 118 78 0 chr4 28055216 28055267 -127574853 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 8 799 213 317 0 0 chr4 28055268 28055350 -127574770 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 8 799 957 131 3 0 chr4 28055404 28055700 -127574420 + (GA)n Simple_repeat Simple_repeat 1 296 0 8 799 3071 269 92 65 chr4 28055700 28056049 -127574071 - Lx6 LINE L1 -345 7115 6761 8 799 270 0 0 0 chr4 28056049 28056079 -127574041 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 799 4065 258 79 70 chr4 28056079 28056553 -127573567 - Lx6 LINE L1 -700 6760 6320 8 799 2039 168 13 21 chr4 28056553 28056937 -127573183 - Lx3B LINE L1 -15 6958 6578 9 799 4065 222 72 52 chr4 28056937 28058065 -127572055 - Lx6 LINE L1 -1141 6319 5108 8 799 424 233 23 0 chr4 28058234 28058367 -127571753 - Lx9 LINE L1 -2 7642 7507 9 799 2641 148 18 18 chr4 28058368 28058807 -127571313 - Lx2 LINE L1 -8 6989 6551 9 799 234 150 0 0 chr4 28058869 28058909 -127571211 + (TTG)n Simple_repeat Simple_repeat 3 42 0 9 799 3397 169 67 17 chr4 28059954 28060670 -127569450 + RMER6A LTR ERVK 3 754 -2 9 799 441 95 0 0 chr4 28062955 28063018 -127567102 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 9 799 4005 94 42 2 chr4 28063042 28063608 -127566512 - L1_Mus3 LINE L1 -13 6625 6037 9 799 257 3 0 0 chr4 28063616 28063659 -127566461 + L1_Mus1 LINE L1 6530 6566 -1 9 799 513 80 0 0 chr4 28063719 28063794 -127566326 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 799 441 0 0 0 chr4 28063794 28063842 -127566278 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 799 189 0 0 0 chr4 28064037 28064058 -127566062 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 799 24 0 0 0 chr4 28064319 28064343 -127565777 + AT_rich Low_complexity Low_complexity 1 24 0 1 799 330 45 0 0 chr4 28065083 28065127 -127564993 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 799 322 372 23 33 chr4 28065322 28065536 -127564584 - B3 SINE B2 -3 213 2 1 799 22 35 0 0 chr4 28065631 28065660 -127564460 + AT_rich Low_complexity Low_complexity 1 29 0 1 799 1834 125 41 16 chr4 28065766 28066084 -127564036 - Lx LINE L1 -1 6653 6328 1 799 2060 133 21 3 chr4 28066085 28066416 -127563704 + Lx2 LINE L1 6349 6685 -312 1 799 270 179 63 13 chr4 28066555 28066634 -127563486 + Lx3C LINE L1 6892 6974 -2 1 799 365 274 86 0 chr4 28066877 28066994 -127563126 + MTEa LTR MaLR 252 378 -1 1 799 456 223 101 7 chr4 28067757 28067906 -127562214 + L1MB7 LINE L1 6011 6173 -11 1 799 1776 151 12 21 chr4 28071801 28072133 -127557987 + Lx2 LINE L1 6034 6362 -635 1 799 918 137 0 7 chr4 28072131 28072278 -127557842 - Lx2 LINE L1 -176 6821 6676 1 799 3844 151 21 0 chr4 28072279 28072897 -127557223 + Lx2 LINE L1 6349 6979 -18 1 799 597 345 131 23 chr4 28073171 28073521 -127556599 - MTD LTR MaLR -14 405 18 1 799 561 318 76 39 chr4 28074030 28074387 -127555733 + ORR1D2 LTR MaLR 1 370 0 1 799 2044 134 3 9 chr4 28075148 28075472 -127554648 + ORR1A3 LTR MaLR 3 324 -2 1 799 21 89 0 0 chr4 28075588 28075644 -127554476 + AT_rich Low_complexity Low_complexity 1 56 0 1 799 418 370 8 38 chr4 28077810 28078074 -127552046 + Lx8 LINE L1 6284 6539 -934 1 799 26 30 0 0 chr4 28079353 28079386 -127550734 + AT_rich Low_complexity Low_complexity 1 33 0 1 799 25 102 0 0 chr4 28079590 28079678 -127550442 + AT_rich Low_complexity Low_complexity 1 88 0 1 799 315 49 0 0 chr4 28079951 28079992 -127550128 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 799 2505 131 23 33 chr4 28079992 28080419 -127549701 - Lx LINE L1 -23 6631 6209 1 799 295 359 32 13 chr4 28080672 28080827 -127549293 + RMER15 LTR ERVL 403 560 -15 1 799 4170 98 16 0 chr4 28081043 28081662 -127548458 + L1_Mus3 LINE L1 6010 6638 0 1 799 1726 206 51 0 chr4 28081664 28081999 -127548121 - Lx2A1 LINE L1 -14 6994 6643 1 799 258 328 50 0 chr4 28082681 28082800 -127547320 + MLT1B LTR MaLR 240 364 -26 1 799 866 300 104 0 chr4 28082843 28083123 -127546997 + MTEa LTR MaLR 71 379 0 1 799 2234 321 111 74 chr4 28083142 28084596 -127545524 + MTEa-int LTR MaLR 16 1523 -57 1 799 649 364 30 7 chr4 28084661 28084957 -127545163 + MTEa LTR MaLR 71 373 -6 1 799 478 148 42 25 chr4 28085760 28085878 -127544242 - Lx LINE L1 0 6654 6535 1 799 3084 144 3 125 chr4 28085878 28086145 -127543975 - L1_Mm LINE L1 -697 5186 4926 1 799 1075 103 0 0 chr4 28086145 28086291 -127543829 + B1_Mm SINE Alu 2 147 0 1 799 3084 144 3 125 chr4 28086291 28086689 -127543431 - L1_Mm LINE L1 -958 4925 4602 1 799 797 280 49 41 chr4 28086692 28086938 -127543182 + ORR1C2 LTR MaLR 136 383 -1 1 799 702 234 91 32 chr4 28086943 28087164 -127542956 + L1_Rod LINE L1 4953 5186 -661 1 799 432 158 0 0 chr4 28087164 28087240 -127542880 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 799 294 191 392 73 chr4 28087241 28087497 -127542623 + L1_Rod LINE L1 5169 5506 -341 1 799 732 281 15 5 chr4 28087498 28087698 -127542422 - Lx6 LINE L1 -47 7413 7212 1 799 702 274 154 6 chr4 28087709 28088072 -127542048 + Lx9 LINE L1 7193 7609 -35 1 799 901 87 48 0 chr4 28088076 28088202 -127541918 + B1_Mus1 SINE Alu 4 135 -13 1 799 489 34 0 0 chr4 28088205 28088264 -127541856 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 799 1010 124 0 0 chr4 28088480 28088625 -127541495 + B1_Mus1 SINE Alu 2 146 -2 1 799 24 77 0 0 chr4 28089183 28089235 -127540885 + AT_rich Low_complexity Low_complexity 1 52 0 1 799 207 0 0 0 chr4 28090267 28090290 -127539830 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 799 340 111 0 0 chr4 28090789 28090834 -127539286 + HAL1-3A_ME LINE L1 1968 2012 -846 1 799 572 146 0 10 chr4 28090835 28090939 -127539181 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 799 351 0 0 0 chr4 28090939 28090978 -127539142 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 799 437 308 45 87 chr4 28090992 28091234 -127538886 - MTC-int LTR MaLR -300 958 727 1 799 961 307 74 31 chr4 28091231 28091511 -127538609 - MTC-int LTR MaLR -715 543 249 1 799 697 60 17 8 chr4 28091511 28091629 -127538491 - L1_Mus3 LINE L1 -5 6633 6515 1 799 961 307 74 31 chr4 28091629 28091701 -127538419 - MTC-int LTR MaLR -1010 248 176 1 799 189 362 51 17 chr4 28092818 28092936 -127537184 - L3 LINE CR1 -1118 3371 3250 1 799 306 0 0 0 chr4 28093002 28093036 -127537084 + (A)n Simple_repeat Simple_repeat 1 34 0 1 799 424 191 9 9 chr4 28093036 28093142 -127536978 + Lx9 LINE L1 7517 7622 -22 1 799 600 223 303 0 chr4 28093244 28093409 -127536711 - ORR1B2 LTR MaLR -152 215 1 1 799 1503 56 20 0 chr4 28093421 28093619 -127536501 - L1Md_F3 LINE L1 0 6584 6383 1 799 3688 223 45 3 chr4 28093619 28095036 -127535084 - ORR1B2-int LTR MaLR -12 1497 1 1 799 291 172 14 111 chr4 28095038 28095110 -127535010 - ORR1B2 LTR MaLR -2 365 301 1 799 608 298 35 10 chr4 28095112 28095312 -127534808 + Lx9 LINE L1 7261 7465 -179 1 799 414 0 0 0 chr4 28095315 28095361 -127534759 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 799 344 234 45 9 chr4 28095376 28095488 -127534632 + Lx9 LINE L1 7529 7644 0 1 799 210 105 0 0 chr4 28095490 28095528 -127534592 + (A)n Simple_repeat Simple_repeat 1 38 0 1 799 1421 278 76 72 chr4 28095533 28095878 -127534242 + L1_Mur3 LINE L1 3334 3705 -2175 1 799 683 274 43 34 chr4 28095878 28096086 -127534034 + B3 SINE B2 1 210 -6 1 799 1421 278 76 72 chr4 28096086 28096452 -127533668 + L1_Mur3 LINE L1 3706 4048 -1832 1 799 301 279 12 0 chr4 28097063 28097149 -127532971 - PB1D10 SINE Alu 0 117 31 1 799 35 41 0 0 chr4 28098198 28098247 -127531873 + AT_rich Low_complexity Low_complexity 1 49 0 1 799 501 371 75 32 chr4 28098247 28098684 -127531436 - MT2A LTR ERVL -77 456 1 1 799 495 0 0 0 chr4 28099210 28099265 -127530855 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 799 517 314 70 61 chr4 28099513 28099903 -127530217 - RLTR26 LTR ERVK -225 417 1 1 799 25 0 0 0 chr4 28101097 28101122 -127528998 + AT_rich Low_complexity Low_complexity 1 25 0 1 799 289 248 144 0 chr4 28101416 28101541 -127528579 - Lx2 LINE L1 -74 6923 6844 1 799 270 80 0 39 chr4 28101534 28101586 -127528534 + L1Md_T LINE L1 6530 6579 -3 1 799 337 144 20 82 chr4 28101929 28102027 -127528093 - Lx2 LINE L1 -2 6995 6904 1 799 21 71 0 0 chr4 28102358 28102400 -127527720 + AT_rich Low_complexity Low_complexity 1 42 0 1 799 24 53 0 0 chr4 28102763 28102801 -127527319 + AT_rich Low_complexity Low_complexity 1 38 0 1 799 2377 227 24 54 chr4 28102804 28103396 -127526724 - Lx5 LINE L1 0 7050 6477 1 799 229 218 0 0 chr4 28103933 28103988 -127526132 + CENSAT_MC Satellite centr 5 59 -1 1 799 434 248 35 92 chr4 28103949 28104365 -127525755 + SYNREP_MM Satellite Satellite 1 392 -4 1 799 24 0 0 0 chr4 28104863 28104887 -127525233 + AT_rich Low_complexity Low_complexity 1 24 0 1 799 1376 238 113 8 chr4 28105250 28105631 -127524489 - MTC LTR MaLR 0 421 1 1 799 7017 21 0 1 chr4 28105705 28106509 -127523611 - RLTR13B4 LTR ERVK 0 803 1 1 799 745 177 7 7 chr4 28107352 28107494 -127522626 - RMER19C LTR ERVK 0 611 470 1 799 291 51 0 0 chr4 28107495 28107501 -127522619 + (T)n Simple_repeat Simple_repeat 1 6 0 1 799 622 95 0 9 chr4 28107501 28107607 -127522513 - Lx LINE L1 -1 6653 6549 1 799 291 51 0 0 chr4 28107607 28107639 -127522481 + (T)n Simple_repeat Simple_repeat 1 32 0 1 799 240 149 0 0 chr4 28107658 28107705 -127522415 + (T)n Simple_repeat Simple_repeat 1 47 0 1 799 7962 2 0 0 chr4 28107733 28108621 -127521499 - L1Md_A LINE L1 -1 6581 5694 1 799 436 268 51 121 chr4 28108606 28108920 -127521200 - L1_Mur1 LINE L1 -2145 3735 3444 1 799 243 79 0 0 chr4 28108922 28108960 -127521160 + (T)n Simple_repeat Simple_repeat 1 38 0 1 799 962 73 14 14 chr4 28108962 28109101 -127521019 - B1_Mm SINE Alu 0 147 9 1 799 228 67 0 0 chr4 28109115 28109145 -127520975 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1 799 220 222 74 0 chr4 28109152 28109206 -127520914 - B1_Mus2 SINE Alu -9 138 81 1 799 9747 169 18 9 chr4 28109206 28111059 -127519061 - L1_Mur1 LINE L1 -1782 4104 2235 1 799 21 0 0 0 chr4 28111244 28111265 -127518855 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 23 0 0 0 chr4 28112746 28112769 -127517351 + AT_rich Low_complexity Low_complexity 1 23 0 1 799 525 160 0 0 chr4 28113755 28113880 -127516240 + CT-rich Low_complexity Low_complexity 1 125 0 1 799 216 0 0 0 chr4 28113880 28113904 -127516216 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 799 558 43 0 0 chr4 28113904 28113972 -127516148 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 799 183 184 0 0 chr4 28114002 28114040 -127516080 + GA-rich Low_complexity Low_complexity 4 41 0 1 799 201 39 0 0 chr4 28114076 28114102 -127516018 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 799 1305 309 54 35 chr4 28114171 28114707 -127515413 - Lx8 LINE L1 -269 7204 6659 1 799 33 56 0 0 chr4 28115411 28115465 -127514655 + AT_rich Low_complexity Low_complexity 1 54 0 1 799 21 57 0 0 chr4 28115526 28115561 -127514559 + AT_rich Low_complexity Low_complexity 1 35 0 1 799 248 77 26 0 chr4 28116078 28116117 -127514003 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 799 783 336 37 52 chr4 28116132 28116694 -127513426 - Lx9 LINE L1 -211 7433 6880 1 799 33 56 0 0 chr4 28117312 28117366 -127512754 + AT_rich Low_complexity Low_complexity 1 54 0 1 799 25 0 0 0 chr4 28119006 28119031 -127511089 + AT_rich Low_complexity Low_complexity 1 25 0 1 799 182 242 15 0 chr4 28119122 28119188 -127510932 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 799 24 77 0 0 chr4 28119542 28119594 -127510526 + AT_rich Low_complexity Low_complexity 1 52 0 1 799 2409 84 0 52 chr4 28119907 28120270 -127509850 - L1_Mus2 LINE L1 0 6566 6223 1 799 296 353 38 0 chr4 28120702 28120835 -127509285 - MER3 DNA MER1_type -63 146 9 2 799 6932 14 1 1 chr4 28121637 28122450 -127507670 + L1_Mm LINE L1 3595 4407 -1476 2 799 275 212 136 0 chr4 28122451 28122517 -127507603 + B4 SINE B4 208 282 -10 2 799 399 83 0 0 chr4 28122531 28122591 -127507529 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 799 459 0 0 0 chr4 28122592 28122643 -127507477 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 799 477 34 0 0 chr4 28123048 28123107 -127507013 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 799 414 362 30 40 chr4 28123856 28124184 -127505936 - Lx8 LINE L1 -582 6891 6567 2 799 711 280 29 41 chr4 28124270 28124670 -127505450 + Lx6 LINE L1 962 1344 -5742 2 799 4058 253 78 20 chr4 28124683 28126799 -127503321 + Lx6 LINE L1 4918 7167 -293 2 799 1030 150 10 34 chr4 28126815 28127022 -127503098 + Lx LINE L1 6453 6654 0 2 799 1983 256 46 12 chr4 28127063 28127716 -127502404 + Lx7 LINE L1 4946 5620 -260 2 799 834 280 71 15 chr4 28127736 28128004 -127502116 + RLTR18B LTR ERVK 230 512 0 2 799 1860 298 156 52 chr4 28128004 28129046 -127501074 + Lx7 LINE L1 5729 6878 -818 2 799 514 309 63 130 chr4 28129032 28129556 -127500564 + Lx8 LINE L1 6320 6808 -665 2 799 717 300 31 73 chr4 28129562 28129741 -127500379 + L1_Mur3 LINE L1 4906 5068 -812 2 799 749 180 40 11 chr4 28129741 28129915 -127500205 - Lx2 LINE L1 -6 6991 6813 2 799 717 300 31 73 chr4 28129915 28130256 -127499864 + L1_Mur3 LINE L1 5069 5404 -476 2 799 231 232 43 0 chr4 28130292 28130361 -127499759 - Lx7 LINE L1 -15 7681 7610 2 799 308 105 13 38 chr4 28130376 28130455 -127499665 + A-rich Low_complexity Low_complexity 4 80 0 2 799 621 327 38 13 chr4 28130475 28130788 -127499332 - Lx7 LINE L1 -400 7296 6976 2 799 607 293 70 26 chr4 28130841 28131208 -127498912 - Lx7 LINE L1 -1608 6036 5649 2 799 892 310 113 59 chr4 28131301 28132534 -127497586 + L1_Mur3 LINE L1 4027 5326 -554 2 799 273 57 0 0 chr4 28133246 28133281 -127496839 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 799 597 204 0 0 chr4 28134646 28134788 -127495332 + (TA)n Simple_repeat Simple_repeat 2 143 0 2 799 576 304 44 48 chr4 28135130 28135474 -127494646 - Lx8 LINE L1 -375 5928 5593 2 799 443 104 13 0 chr4 28135476 28135538 -127494582 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2 799 1389 61 0 0 chr4 28135538 28135718 -127494402 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 799 443 104 13 0 chr4 28135718 28135732 -127494388 + (TTCC)n Simple_repeat Simple_repeat 4 17 0 2 799 601 195 9 26 chr4 28135739 28135855 -127494265 - B1_Mur3 SINE Alu -1 148 35 2 799 1828 178 22 11 chr4 28135857 28136216 -127493904 - ORR1B2 LTR MaLR -4 363 1 2 799 740 285 77 54 chr4 28136254 28136751 -127493369 - Lx8 LINE L1 -398 5449 4942 2 799 270 0 0 0 chr4 28136788 28136818 -127493302 + (TTG)n Simple_repeat Simple_repeat 3 32 0 2 799 260 233 0 0 chr4 28136861 28136921 -127493199 - L1M3 LINE L1 -1436 4704 4645 2 799 248 306 0 0 chr4 28136971 28137056 -127493064 - L1M3 LINE L1 -1637 4506 4422 2 799 386 340 121 33 chr4 28137059 28137365 -127492755 + ORR1D2 LTR MaLR 5 337 -33 2 799 1349 230 112 21 chr4 28137365 28137703 -127492417 + ORR1D1 LTR MaLR 1 369 -5 2 799 1467 243 21 9 chr4 28137712 28138052 -127492068 + ORR1D1-int LTR MaLR 9 352 -1018 2 799 304 243 51 59 chr4 28138058 28138176 -127491944 + L1_Rod LINE L1 4814 4930 -917 2 799 266 254 0 0 chr4 28138855 28138926 -127491194 - L1M2 LINE L1 -2280 3597 3527 2 799 261 279 0 0 chr4 28138987 28139048 -127491072 + (TGG)n Simple_repeat Simple_repeat 2 62 0 2 799 195 139 0 0 chr4 28139334 28139370 -127490750 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 799 269 406 12 18 chr4 28139383 28139546 -127490574 - RSINE1 SINE B4 0 165 4 2 799 780 299 62 56 chr4 28139546 28140272 -127489848 - L1M2 LINE L1 -2967 3176 2427 2 799 698 323 84 36 chr4 28140275 28140609 -127489511 - ORR1E LTR MaLR 0 359 10 2 799 1960 298 73 102 chr4 28140617 28141657 -127488463 - ORR1E-int LTR MaLR 0 1370 361 2 799 1825 203 69 17 chr4 28141674 28142095 -127488025 - RLTR41 LTR ERV1 -3 443 1 2 799 935 295 53 24 chr4 28142096 28142436 -127487684 - ORR1E-int LTR MaLR -1020 350 1 2 799 474 299 87 51 chr4 28142430 28142671 -127487449 - ORR1E LTR MaLR -3 356 107 2 799 2004 153 16 19 chr4 28142671 28143037 -127487083 - RLTR9A LTR ERVK -2 366 2 2 799 693 274 40 30 chr4 28143174 28143454 -127486666 - L1M2 LINE L1 -3486 2394 2132 2 799 29 47 0 0 chr4 28144013 28144056 -127486064 + AT_rich Low_complexity Low_complexity 1 43 0 2 799 21 71 0 0 chr4 28144573 28144615 -127485505 + AT_rich Low_complexity Low_complexity 1 42 0 2 799 1088 329 37 24 chr4 28145273 28145895 -127484225 + Lx9 LINE L1 6421 7050 -594 2 799 56 102 0 0 chr4 28146096 28146292 -127483828 + AT_rich Low_complexity Low_complexity 1 196 0 2 799 874 197 57 14 chr4 28146408 28146619 -127483501 - Lx2B LINE L1 0 7000 6781 2 799 189 74 0 0 chr4 28146879 28146906 -127483214 + (TGG)n Simple_repeat Simple_repeat 2 28 0 2 799 31 26 0 0 chr4 28146935 28146973 -127483147 + AT_rich Low_complexity Low_complexity 1 38 0 2 799 2067 145 29 69 chr4 28148088 28148216 -127481904 - RLTR9E LTR ERVK 0 409 290 2 799 6787 36 2 2 chr4 28148216 28149046 -127481074 - L1Md_F3 LINE L1 0 6584 5755 2 799 2067 145 29 69 chr4 28149046 28149338 -127480782 - RLTR9E LTR ERVK -120 289 6 2 799 590 89 0 11 chr4 28149735 28149826 -127480294 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 2 799 227 248 15 39 chr4 28151951 28152081 -127478039 + T-rich Low_complexity Low_complexity 5 131 0 2 799 230 387 17 43 chr4 28152185 28152301 -127477819 - Lx8 LINE L1 -206 7267 7155 2 799 552 195 29 6 chr4 28152388 28152563 -127477557 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 799 286 266 56 56 chr4 28152621 28152816 -127477304 - Lx9 LINE L1 -127 7517 7323 2 799 1546 325 58 49 chr4 28152907 28153748 -127476372 + Lx9 LINE L1 6460 7308 -336 2 799 5321 131 23 3 chr4 28155906 28156759 -127473361 - Lx LINE L1 -2 6652 5783 2 799 5012 93 35 0 chr4 28156774 28157486 -127472634 - Lx3_Mus LINE L1 -7 7002 6266 2 799 3479 165 42 2 chr4 28157491 28158129 -127471991 - L1_Mm LINE L1 -99 5784 5121 2 799 25 31 0 0 chr4 28158454 28158486 -127471634 + AT_rich Low_complexity Low_complexity 1 32 0 2 799 251 244 101 34 chr4 28158912 28159001 -127471119 - PB1D10 SINE Alu 0 117 23 2 799 356 398 41 0 chr4 28159321 28159517 -127470603 - B3 SINE B2 -12 204 1 2 799 210 37 0 0 chr4 28161762 28161789 -127468331 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2 799 2671 155 5 0 chr4 28162092 28162531 -127467589 + Lx2 LINE L1 6556 6996 -1 2 799 25 75 0 0 chr4 28162531 28162584 -127467536 + AT_rich Low_complexity Low_complexity 1 53 0 2 799 350 284 57 81 chr4 28162636 28162847 -127467273 - L1M3 LINE L1 -416 5755 5550 2 799 494 63 0 0 chr4 28162869 28162932 -127467188 - L1_Mm LINE L1 -75 5808 5746 2 799 10508 23 1 0 chr4 28162937 28164167 -127465953 - L1_Mm LINE L1 -16 5867 4637 2 799 228 67 0 0 chr4 28164274 28164304 -127465816 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 2 799 596 310 77 4 chr4 28164412 28164645 -127465475 + MLT1B LTR MaLR 134 383 -7 2 799 291 276 54 89 chr4 28164656 28164899 -127465221 - L1M3 LINE L1 -715 5465 5220 2 799 1480 230 48 30 chr4 28165020 28165392 -127464728 - ORR1C2 LTR MaLR -5 379 1 2 799 225 0 0 0 chr4 28166205 28166230 -127463890 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 799 314 306 79 42 chr4 28166962 28167177 -127462943 + L1M2 LINE L1 2271 2493 -3650 2 799 252 352 70 27 chr4 28167432 28167605 -127462515 + MLT1F1 LTR MaLR 250 451 -118 2 799 3671 90 0 17 chr4 28167894 28168423 -127461697 + L1Md_F2 LINE L1 6063 6582 0 2 799 25 0 0 0 chr4 28168992 28169017 -127461103 + AT_rich Low_complexity Low_complexity 1 25 0 2 799 2111 148 20 0 chr4 28169017 28169362 -127460758 - Lx3A LINE L1 -7 6974 6623 2 799 410 187 157 55 chr4 28170327 28170437 -127459683 - MTEb LTR MaLR -2 377 252 2 799 219 244 152 13 chr4 28170668 28170747 -127459373 + L2a LINE L2 3332 3421 -5 2 799 189 0 0 0 chr4 28172383 28172404 -127457716 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 799 369 0 0 0 chr4 28172563 28172604 -127457516 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 799 705 297 101 32 chr4 28172868 28173207 -127456913 - L1M5 LINE L1 -366 5813 5459 2 799 414 0 0 0 chr4 28173207 28173253 -127456867 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 799 705 297 101 32 chr4 28173253 28173410 -127456710 - L1M5 LINE L1 -721 5458 5284 2 799 636 226 0 0 chr4 28173687 28173842 -127456278 + (TA)n Simple_repeat Simple_repeat 1 155 0 2 799 492 285 30 75 chr4 28174151 28174352 -127455768 + B3A SINE B2 5 196 -2 2 799 504 68 0 0 chr4 28174367 28174440 -127455680 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 799 454 340 43 36 chr4 28174445 28174726 -127455394 + B4A SINE B4 1 283 -9 2 799 25 31 0 0 chr4 28174980 28175012 -127455108 + AT_rich Low_complexity Low_complexity 1 32 0 2 799 2375 227 60 25 chr4 28175238 28175806 -127454314 + RMER1B Other Other 479 1066 0 2 799 2972 153 40 56 chr4 28175951 28176544 -127453576 - Lx3A LINE L1 -7 6974 6391 2 799 345 140 0 0 chr4 28176555 28176612 -127453508 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 2 799 6766 99 21 4 chr4 28176616 28177581 -127452539 - L1_Mus3 LINE L1 0 6638 5658 2 799 3568 133 42 0 chr4 28177569 28178134 -127451986 + L1_Mus3 LINE L1 5043 5631 -252 2 799 4009 145 81 41 chr4 28178129 28178651 -127451469 - Lx3_Mus LINE L1 -582 6427 5909 2 799 288 0 0 0 chr4 28178651 28178683 -127451437 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 799 7407 90 19 3 chr4 28178683 28179775 -127450345 - Lx3_Mus LINE L1 -1101 5908 4770 2 799 1992 154 15 0 chr4 28179866 28180196 -127449924 - RMER6-int LTR ERVK -10 3167 2833 2 99 2416 262 16 13 chr4 28180198 28180886 -127449234 - MurERV4-int LTR ERVK -1126 4134 3445 2 800 7957 151 29 30 chr4 28180902 28182169 -127447951 - Lx3C LINE L1 -8 6968 5684 2 800 1140 82 0 0 chr4 28182169 28182316 -127447804 + B1_Mm SINE Alu 1 147 0 2 800 7957 150 47 69 chr4 28182316 28182686 -127447434 - Lx3C LINE L1 -1293 5683 5318 2 800 186 43 0 0 chr4 28182686 28182709 -127447411 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 800 2263 28 0 46 chr4 28182709 28183011 -127447109 - RLTR10B LTR ERVK -1 291 4 2 800 239 65 0 0 chr4 28183011 28183042 -127447078 - RLTR10B LTR ERVK -261 31 1 2 800 4568 147 16 62 chr4 28183050 28183827 -127446293 - Lx3C LINE L1 -590 5296 4525 2 800 589 89 50 0 chr4 28183827 28183928 -127446192 - L1_Mus3 LINE L1 -7 6631 6526 2 800 4568 147 16 62 chr4 28183928 28184007 -127446113 - Lx3C LINE L1 -1362 4524 4478 2 800 1502 164 0 14 chr4 28184007 28184285 -127445835 - Lx3B LINE L1 -4 6969 6696 2 800 4568 147 16 62 chr4 28184285 28184364 -127445756 - Lx3C LINE L1 -1409 4477 4403 2 800 2736 252 41 22 chr4 28184405 28185115 -127445005 - MurERV4-int LTR ERVK -1800 3460 2733 2 800 512 188 0 26 chr4 28185115 28185230 -127444890 - Lx3B LINE L1 -15 6958 6847 2 800 2736 252 41 22 chr4 28185230 28185320 -127444800 - MurERV4-int LTR ERVK -2528 2732 2645 2 800 857 265 80 27 chr4 28185335 28185750 -127444370 - MurERV4-int LTR ERVK -1385 1792 1239 2 800 180 103 0 0 chr4 28185765 28185781 -127444339 + (A)n Simple_repeat Simple_repeat 1 16 0 3 800 5549 64 3 4 chr4 28185781 28186515 -127443605 + L1Md_F2 LINE L1 5862 6582 0 3 800 710 332 54 58 chr4 28186754 28187182 -127442938 + Lx8 LINE L1 7047 7472 -1 3 800 301 281 94 29 chr4 28187587 28187908 -127442212 + L1MA6 LINE L1 2286 2751 -4256 3 800 1561 188 13 26 chr4 28188223 28188534 -127441586 - RLTR15 LTR ERVK -52 307 1 3 800 227 304 115 52 chr4 28189078 28189442 -127440678 + Lx9 LINE L1 6069 6455 -1189 3 800 1102 190 14 5 chr4 28189443 28189660 -127440460 + L1_Mur3 LINE L1 3581 3799 -2081 3 800 902 227 98 0 chr4 28189658 28189914 -127440206 - L1_Mur3 LINE L1 -2278 3602 3322 3 800 5323 202 55 10 chr4 28189914 28190961 -127439159 + L1_Mur3 LINE L1 3807 4917 -963 3 800 3771 62 0 6 chr4 28190961 28191490 -127438630 + L1Md_F2 LINE L1 6085 6582 0 3 800 5323 202 55 10 chr4 28191490 28191766 -127438354 + L1_Mur3 LINE L1 4918 5190 -690 3 800 1900 198 62 12 chr4 28192103 28192523 -127437597 + L1_Mur3 LINE L1 5177 5617 -263 3 800 2326 289 46 3 chr4 28192525 28193195 -127436925 + Lx7 LINE L1 6543 7241 -455 3 800 259 312 51 13 chr4 28193545 28193623 -127436497 - PB1D10 SINE Alu -7 110 30 3 800 973 245 53 45 chr4 28193761 28194098 -127436022 + Lx7 LINE L1 7357 7696 0 3 800 339 399 35 19 chr4 28194179 28194378 -127435742 + B3A SINE B2 1 205 -11 3 800 256 189 32 32 chr4 28194378 28194471 -127435649 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 800 22 35 0 0 chr4 28194472 28194501 -127435619 + AT_rich Low_complexity Low_complexity 1 29 0 3 800 369 329 81 24 chr4 28194555 28195140 -127434980 + L1MA6 LINE L1 4182 4810 -2193 3 800 899 86 7 0 chr4 28195373 28195512 -127434608 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 3 800 459 0 0 0 chr4 28195523 28195574 -127434546 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 800 354 23 0 0 chr4 28195574 28195616 -127434504 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 800 345 332 148 5 chr4 28195616 28195819 -127434301 + L1MA6 LINE L1 4917 5148 -1855 3 800 642 292 151 25 chr4 28196281 28197044 -127433076 + L1MA6 LINE L1 5316 6186 -817 3 800 3158 144 12 13 chr4 28197050 28197727 -127432393 - Lx2 LINE L1 -912 6085 5411 3 800 4943 155 18 6 chr4 28197728 28198586 -127431534 + Lx2 LINE L1 6129 6996 -1 3 800 557 300 88 67 chr4 28198593 28199282 -127430838 + L1MA6 LINE L1 6177 6879 -281 3 800 1660 332 89 21 chr4 28199397 28200333 -127429787 - Lx8 LINE L1 -218 7255 6257 3 800 1186 323 48 18 chr4 28200589 28201196 -127428924 - Lx7 LINE L1 -230 7243 6593 3 800 444 51 0 0 chr4 28201204 28201263 -127428857 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3 800 423 128 36 18 chr4 28201316 28201427 -127428693 + (TA)n Simple_repeat Simple_repeat 2 114 0 3 800 198 0 0 0 chr4 28201427 28201449 -127428671 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 800 1763 288 66 16 chr4 28201598 28202299 -127427821 - L1_Mur3 LINE L1 -117 5763 5028 3 800 216 129 88 8 chr4 28202339 28202464 -127427656 + (TA)n Simple_repeat Simple_repeat 2 136 0 3 800 244 317 12 0 chr4 28202650 28202732 -127427388 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 800 274 302 84 114 chr4 28202761 28202892 -127427228 - RSINE1 SINE B4 -35 130 4 3 800 322 231 55 82 chr4 28202936 28203082 -127427038 - Lx6 LINE L1 -26 7434 7293 3 800 427 256 8 40 chr4 28203063 28203189 -127426931 - Lx6 LINE L1 -1463 5997 5876 3 800 1720 210 157 14 chr4 28203189 28203367 -127426753 - L1_Mus4 LINE L1 -480 6156 5949 3 800 3370 64 2 0 chr4 28203367 28203791 -127426329 + L1_Mus1 LINE L1 6143 6567 0 3 800 12369 210 157 14 chr4 28203791 28203970 -127426150 - L1_Mus4 LINE L1 -688 5948 5733 3 800 318 26 0 0 chr4 28203970 28204009 -127426111 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 800 12369 250 100 16 chr4 28204009 28205487 -127424633 - L1_Mus4 LINE L1 -152 5734 4085 3 800 1054 89 0 14 chr4 28205487 28205622 -127424498 + B1_Mus2 SINE Alu 2 135 -12 3 800 531 0 0 0 chr4 28205622 28205681 -127424439 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 3 800 1054 89 0 14 chr4 28205681 28205693 -127424427 + B1_Mus2 SINE Alu 136 147 0 3 800 12369 250 100 16 chr4 28205693 28207671 -127422449 - L1_Mus4 LINE L1 -1802 4084 2050 3 800 534 103 0 0 chr4 28207671 28207749 -127422371 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 800 12369 250 100 16 chr4 28207749 28208120 -127422000 - L1_Mus4 LINE L1 -3837 2049 1538 3 800 618 0 37 0 chr4 28208120 28208202 -127421918 + (TA)n Simple_repeat Simple_repeat 2 86 0 3 800 12369 264 69 17 chr4 28208202 28208892 -127421228 - L1_Mus4 LINE L1 -4349 1537 892 3 800 621 100 0 0 chr4 28209617 28209707 -127420413 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 800 981 146 0 0 chr4 28209707 28209872 -127420248 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 800 306 0 0 0 chr4 28209872 28209905 -127420215 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 800 306 292 0 33 chr4 28210222 28210314 -127419806 + L1M4b LINE L1 1694 1782 -5552 3 800 504 329 93 5 chr4 28210321 28210580 -127419540 + B4A SINE B4 9 285 -7 3 800 450 0 0 0 chr4 28210655 28210705 -127419415 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 800 363 23 0 0 chr4 28210705 28210748 -127419372 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 800 373 296 92 6 chr4 28210753 28210916 -127419204 + MLT1A-int LTR MaLR 1005 1181 -190 3 800 8401 160 12 10 chr4 28210916 28212589 -127417531 + Lx2 LINE L1 5317 6997 0 3 800 343 52 17 17 chr4 28212671 28212730 -127417390 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 800 285 268 103 21 chr4 28212909 28213054 -127417066 + MLT1A LTR MaLR 209 365 -9 3 800 21 36 0 0 chr4 28213160 28213188 -127416932 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 281 0 82 0 chr4 28215121 28215170 -127414950 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 800 231 389 17 34 chr4 28215266 28215383 -127414737 + PB1D10 SINE Alu 2 116 -1 3 800 22 0 0 0 chr4 28215412 28215434 -127414686 + AT_rich Low_complexity Low_complexity 1 22 0 3 800 201 87 13 92 chr4 28215456 28215532 -127414588 + A-rich Low_complexity Low_complexity 2 71 0 3 800 22 0 0 0 chr4 28216103 28216125 -127413995 + AT_rich Low_complexity Low_complexity 1 22 0 3 800 346 308 31 37 chr4 28217770 28217932 -127412188 - B3A SINE B2 -4 194 34 3 800 3152 68 2 2 chr4 28217932 28218333 -127411787 - L1_Mus1 LINE L1 -209 6358 5958 3 800 1198 71 0 40 chr4 28218333 28218509 -127411611 + L1_Mus1 LINE L1 6397 6565 -2 3 800 279 0 0 0 chr4 28218515 28218546 -127411574 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 3 800 214 191 0 0 chr4 28218546 28218588 -127411532 - B3A SINE B2 -153 45 4 3 800 21 57 0 0 chr4 28218710 28218745 -127411375 + AT_rich Low_complexity Low_complexity 1 35 0 3 800 197 111 44 0 chr4 28219061 28219106 -127411014 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 800 230 289 26 0 chr4 28220459 28220535 -127409585 - Lx7 LINE L1 0 7696 7619 3 800 241 161 17 35 chr4 28220550 28220608 -127409512 + A-rich Low_complexity Low_complexity 3 59 0 3 800 295 264 0 0 chr4 28220639 28220711 -127409409 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 800 306 186 0 0 chr4 28220790 28220876 -127409244 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 800 252 0 0 0 chr4 28220883 28220911 -127409209 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 3 800 1077 262 92 12 chr4 28220936 28221261 -127408859 - Lx7 LINE L1 -358 7338 6988 3 800 332 266 102 53 chr4 28221416 28221603 -127408517 - L1M5 LINE L1 -609 5570 5375 3 800 28 0 0 0 chr4 28221664 28221692 -127408428 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 668 170 14 28 chr4 28222047 28222192 -127407928 + URR1B DNA MER1_type 83 225 0 3 800 321 321 0 44 chr4 28222425 28222539 -127407581 - Lx7 LINE L1 -690 7006 6898 3 800 696 56 0 0 chr4 28223718 28223807 -127406313 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 800 459 0 0 0 chr4 28223815 28223866 -127406254 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 800 477 0 0 0 chr4 28225338 28225391 -127404729 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 800 360 318 55 8 chr4 28225403 28225530 -127404590 - RSINE1 SINE B4 -31 134 2 3 800 296 98 33 0 chr4 28226922 28226983 -127403137 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 800 216 0 0 0 chr4 28227676 28227700 -127402420 + (T)n Simple_repeat Simple_repeat 1 24 0 3 800 342 0 0 0 chr4 28228274 28228312 -127401808 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 800 204 214 0 0 chr4 28228589 28228631 -127401489 + A-rich Low_complexity Low_complexity 2 43 0 3 800 1221 106 0 0 chr4 28228654 28228834 -127401286 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 800 25 0 0 0 chr4 28229481 28229506 -127400614 + AT_rich Low_complexity Low_complexity 1 25 0 3 800 1059 70 21 0 chr4 28230134 28230277 -127399843 + B1_Mm SINE Alu 1 146 -1 3 800 309 207 0 0 chr4 28230284 28230371 -127399749 + A-rich Low_complexity Low_complexity 1 87 0 3 800 23 0 0 0 chr4 28230918 28230941 -127399179 + AT_rich Low_complexity Low_complexity 1 23 0 3 800 477 34 0 0 chr4 28230941 28231000 -127399120 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 800 240 267 143 11 chr4 28231067 28231158 -127398962 + PB1D9 SINE Alu 10 112 -8 3 800 240 264 21 92 chr4 28232174 28232316 -127397804 - Lx7 LINE L1 -51 7645 7514 3 800 2217 242 42 9 chr4 28232334 28232901 -127397219 - Lx7 LINE L1 -276 7420 6835 3 800 1464 172 80 31 chr4 28232902 28233251 -127396869 - L1_Mur3 LINE L1 -324 5556 5191 3 800 25 51 0 0 chr4 28235548 28235587 -127394533 + AT_rich Low_complexity Low_complexity 1 39 0 3 800 243 0 0 0 chr4 28236669 28236696 -127393424 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 800 387 0 0 0 chr4 28236696 28236738 -127393382 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 800 33 25 0 0 chr4 28238913 28238953 -127391167 + AT_rich Low_complexity Low_complexity 1 40 0 3 800 223 203 0 30 chr4 28239208 28239274 -127390846 + GA-rich Low_complexity Low_complexity 4 67 0 3 800 510 272 57 105 chr4 28239609 28239920 -127390200 - ORR1E LTR MaLR 0 359 51 3 800 474 75 0 0 chr4 28239920 28239987 -127390133 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 800 269 68 23 0 chr4 28239988 28240032 -127390088 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 3 800 226 161 77 164 chr4 28240032 28240047 -127390073 - ORR1E LTR MaLR -328 50 41 3 800 26 30 0 0 chr4 28243552 28243585 -127386535 + AT_rich Low_complexity Low_complexity 1 33 0 3 800 8158 43 1 3 chr4 28243866 28245293 -127384827 - L1Md_F2 LINE L1 0 6582 5161 3 800 606 241 14 51 chr4 28245488 28245694 -127384426 + L1MA6 LINE L1 5628 5829 -471 3 800 590 283 18 42 chr4 28245694 28245860 -127384260 + RSINE1 SINE B4 4 165 0 3 800 247 237 0 67 chr4 28245860 28245878 -127384242 + L1MA6 LINE L1 5829 5844 -330 3 800 226 269 0 0 chr4 28245878 28245930 -127384190 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 800 1307 200 18 11 chr4 28246070 28246343 -127383777 - RMER6C LTR ERVK -9 681 407 3 800 1331 145 41 33 chr4 28246446 28246717 -127383403 - RMER6C LTR ERVK -331 359 87 3 800 530 285 7 51 chr4 28246777 28246902 -127383218 + B1F SINE Alu 19 140 -9 3 800 582 15 0 0 chr4 28246902 28246969 -127383151 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 800 530 285 7 51 chr4 28246969 28246980 -127383140 + B1F SINE Alu 141 149 0 3 800 476 273 36 0 chr4 28247039 28247204 -127382916 + L1MA6 LINE L1 6068 6238 -62 3 800 420 130 0 0 chr4 28247230 28247299 -127382821 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 800 198 296 62 0 chr4 28247779 28247860 -127382260 + L3b LINE CR1 123 208 -274 4 800 389 67 0 32 chr4 28248083 28248145 -127381975 + (TATG)n Simple_repeat Simple_repeat 2 61 0 4 800 22 70 0 0 chr4 28248218 28248261 -127381859 + AT_rich Low_complexity Low_complexity 1 43 0 4 800 401 286 89 47 chr4 28248274 28248352 -127381768 + Cheshire DNA MER1_type 1 81 -2339 4 800 4516 52 9 9 chr4 28248352 28248916 -127381204 - LTRIS2 LTR ERV1 0 564 1 4 800 401 286 89 47 chr4 28248916 28249006 -127381114 + Cheshire DNA MER1_type 82 176 -2244 4 800 702 258 192 9 chr4 28250024 28250370 -127379750 - Lx3C LINE L1 -4 6972 6621 4 800 21 57 0 0 chr4 28250990 28251025 -127379095 + AT_rich Low_complexity Low_complexity 1 35 0 4 800 22 88 0 0 chr4 28251784 28251841 -127378279 + AT_rich Low_complexity Low_complexity 1 57 0 4 800 1006 98 0 0 chr4 28252166 28252309 -127377811 + L1_Mus3 LINE L1 5931 6073 -565 4 800 249 174 0 21 chr4 28252309 28252356 -127377764 - L1_Mur2 LINE L1 -649 5228 5183 4 800 180 158 0 0 chr4 28252356 28252394 -127377726 + T-rich Low_complexity Low_complexity 1 38 0 4 800 1062 91 0 0 chr4 28252395 28252538 -127377582 - B1_Mus1 SINE Alu 0 148 6 4 800 441 224 59 25 chr4 28252560 28252679 -127377441 - L1_Mm LINE L1 -903 4980 4858 4 800 487 137 0 127 chr4 28252673 28252807 -127377313 - Lx LINE L1 0 6654 6538 4 800 231 287 23 0 chr4 28252820 28252907 -127377213 + L1MC1 LINE L1 6060 6148 -185 4 800 24 96 0 0 chr4 28252920 28252993 -127377127 + AT_rich Low_complexity Low_complexity 1 73 0 4 800 1752 184 31 9 chr4 28253009 28253333 -127376787 + ORR1A1 LTR MaLR 1 331 -15 4 800 231 36 0 0 chr4 28253377 28253405 -127376715 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 800 322 325 58 17 chr4 28254017 28254189 -127375931 - B3A SINE B2 -18 180 2 4 800 26 0 0 0 chr4 28254491 28254517 -127375603 + AT_rich Low_complexity Low_complexity 1 26 0 4 800 21 0 0 0 chr4 28254586 28254607 -127375513 + AT_rich Low_complexity Low_complexity 1 21 0 4 800 497 16 16 0 chr4 28256007 28256069 -127374051 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 800 589 288 0 0 chr4 28256078 28256203 -127373917 + RSINE1 SINE B4 15 139 -26 4 800 271 269 34 28 chr4 28256263 28256423 -127373697 + L1_Rod LINE L1 5324 5538 -762 4 800 351 257 99 33 chr4 28257522 28257735 -127372385 - Lx7 LINE L1 0 7696 7470 4 800 925 311 29 32 chr4 28257745 28258120 -127372000 - Lx7 LINE L1 -395 7301 6928 4 800 2246 196 164 2 chr4 28258121 28258638 -127371482 - RMER20B LTR ERVK -26 601 1 4 800 1055 16 0 0 chr4 28258657 28258779 -127371341 - L1Md_T LINE L1 -72 5811 5690 4 800 6518 36 1 0 chr4 28258779 28259556 -127370564 + L1Md_T LINE L1 5805 6582 0 4 800 277 274 60 0 chr4 28259561 28259645 -127370475 - Lx7 LINE L1 -772 6924 6836 4 800 4701 280 99 50 chr4 28259741 28261772 -127368348 - Lx7 LINE L1 -923 6773 4637 4 800 234 81 0 0 chr4 28261772 28261809 -127368311 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 800 4701 266 100 72 chr4 28261809 28262873 -127367247 - Lx7 LINE L1 -1244 4636 3541 4 800 21 36 0 0 chr4 28262944 28262972 -127367148 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 27 49 0 0 chr4 28263206 28263247 -127366873 + AT_rich Low_complexity Low_complexity 1 41 0 4 800 198 0 0 0 chr4 28263443 28263465 -127366655 + (T)n Simple_repeat Simple_repeat 1 22 0 4 800 28688 6 14 14 chr4 28263476 28265126 -127364994 - L1Md_A LINE L1 0 6582 4907 4 800 225 183 46 77 chr4 28265126 28265191 -127364929 + RMER20A LTR ERVK 186 248 -268 4 800 28688 6 14 14 chr4 28265191 28267588 -127362532 - L1Md_A LINE L1 0 4906 2471 4 800 2978 52 13 13 chr4 28267598 28267989 -127362131 - L1Md_F2 LINE L1 -12 6570 6180 4 800 640 126 8 8 chr4 28269099 28269219 -127360901 + (GAGAA)n Simple_repeat Simple_repeat 1 120 0 4 800 205 167 0 0 chr4 28269419 28269455 -127360665 + T-rich Low_complexity Low_complexity 2 37 0 4 800 539 306 128 0 chr4 28269889 28270069 -127360051 - B3 SINE B2 -9 207 5 4 800 21 0 0 0 chr4 28270136 28270157 -127359963 + AT_rich Low_complexity Low_complexity 1 21 0 4 800 315 324 67 122 chr4 28270359 28270866 -127359254 - RLTR17 LTR ERVK -99 593 115 4 800 1198 252 97 53 chr4 28271021 28271801 -127358319 - RMER6C LTR ERVK -34 722 8 4 800 37 62 0 0 chr4 28273011 28273076 -127357044 + AT_rich Low_complexity Low_complexity 1 65 0 4 800 21 36 0 0 chr4 28273145 28273173 -127356947 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 24 32 0 0 chr4 28273229 28273260 -127356860 + AT_rich Low_complexity Low_complexity 1 31 0 4 800 689 180 0 0 chr4 28273916 28274038 -127356082 + MTC LTR MaLR 1 122 -299 4 800 418 291 49 14 chr4 28274097 28274240 -127355880 + MTC LTR MaLR 272 419 -2 4 800 24 0 0 0 chr4 28274768 28274792 -127355328 + AT_rich Low_complexity Low_complexity 1 24 0 4 800 27 29 0 0 chr4 28274958 28274992 -127355128 + AT_rich Low_complexity Low_complexity 1 34 0 4 800 2159 169 5 20 chr4 28275488 28275892 -127354228 - L1_Mur2 LINE L1 -6107 605 208 4 800 1330 175 14 11 chr4 28275963 28276252 -127353868 - L1_Mur2 LINE L1 -3529 2351 2061 4 800 453 36 0 0 chr4 28276252 28276307 -127353813 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 800 1177 239 8 55 chr4 28276307 28276401 -127353719 - L1_Mur2 LINE L1 -3814 2066 1990 4 800 5589 169 106 5 chr4 28276395 28276590 -127353530 + L1_Mur1 LINE L1 2584 2793 -3093 4 800 306 0 0 0 chr4 28276590 28276624 -127353496 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 800 5589 169 106 5 chr4 28276624 28277651 -127352469 + L1_Mur1 LINE L1 2794 3929 -1957 4 800 180 111 0 0 chr4 28277651 28277678 -127352442 + (T)n Simple_repeat Simple_repeat 1 27 0 4 800 2600 224 19 55 chr4 28277687 28277852 -127352268 - L1_Mur2 LINE L1 -3923 1954 1800 4 800 1435 171 12 0 chr4 28277852 28278110 -127352010 + Lx2 LINE L1 6734 6994 -3 4 800 2600 224 19 55 chr4 28278110 28278650 -127351470 - L1_Mur2 LINE L1 -4078 1799 1272 4 800 315 0 0 0 chr4 28278650 28278685 -127351435 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 4 800 2600 224 33 53 chr4 28278685 28279086 -127351034 - L1_Mur2 LINE L1 -5815 1271 882 4 800 823 297 0 20 chr4 28279365 28279561 -127350559 - B3 SINE B2 -24 192 1 4 800 23 33 0 0 chr4 28279941 28279971 -127350149 + AT_rich Low_complexity Low_complexity 1 30 0 4 800 530 333 7 13 chr4 28280013 28280162 -127349958 - B1_Mur1 SINE Alu -1 148 1 4 800 254 361 62 97 chr4 28280177 28280321 -127349799 - B1F1 SINE Alu 0 149 11 4 800 797 110 8 0 chr4 28283209 28283336 -127346784 + (TA)n Simple_repeat Simple_repeat 2 129 0 4 800 31 19 0 53 chr4 28283523 28283580 -127346540 + AT_rich Low_complexity Low_complexity 1 54 0 4 800 1358 51 11 0 chr4 28283751 28283929 -127346191 + B2_Mm1t SINE B2 13 192 -1 4 800 23 0 0 0 chr4 28283980 28284003 -127346117 + AT_rich Low_complexity Low_complexity 1 23 0 4 800 43 47 0 0 chr4 28284701 28284765 -127345355 + AT_rich Low_complexity Low_complexity 1 64 0 4 800 4100 180 11 26 chr4 28285120 28285688 -127344432 + L1_Mus2 LINE L1 546 1105 -5552 4 800 476 58 0 0 chr4 28285688 28285757 -127344363 + L1_Mus2 LINE L1 6498 6566 0 4 800 28274 127 17 23 chr4 28285757 28287521 -127342599 + L1_Mus2 LINE L1 1106 2866 -3017 4 800 773 65 0 9 chr4 28287521 28287630 -127342490 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 4 800 28274 123 17 23 chr4 28287630 28289477 -127340643 + L1_Mus2 LINE L1 2867 4733 -1150 4 800 190 0 67 0 chr4 28289477 28289507 -127340613 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 800 28274 123 17 23 chr4 28289507 28290566 -127339554 + L1_Mus2 LINE L1 4734 5789 -94 4 800 1035 110 7 0 chr4 28290566 28290712 -127339408 + B1_Mm SINE Alu 1 147 0 4 800 28274 85 9 57 chr4 28290712 28291525 -127338595 + L1_Mus2 LINE L1 5790 6562 -4 4 800 991 284 162 8 chr4 28292702 28293182 -127336938 + RMER1B Other Other 1 448 -618 4 800 1802 289 69 53 chr4 28293153 28294697 -127335423 + RMER1B Other Other 1 1039 -27 4 800 26 30 0 0 chr4 28294712 28294745 -127335375 + AT_rich Low_complexity Low_complexity 1 33 0 4 800 683 226 198 11 chr4 28295562 28295830 -127334290 + Lx9 LINE L1 7325 7642 -2 4 800 549 55 0 0 chr4 28295961 28296034 -127334086 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 800 23 0 0 0 chr4 28296113 28296136 -127333984 + AT_rich Low_complexity Low_complexity 1 23 0 4 800 22 80 0 0 chr4 28299207 28299257 -127330863 + AT_rich Low_complexity Low_complexity 1 50 0 4 800 1144 77 0 0 chr4 28300215 28300358 -127329762 + B1_Mus2 SINE Alu 3 145 -2 4 800 27 29 0 0 chr4 28300454 28300488 -127329632 + AT_rich Low_complexity Low_complexity 1 34 0 4 800 8795 13 0 0 chr4 28300662 28301749 -127328371 - L1Md_A LINE L1 -1 6581 5495 4 800 308 290 0 11 chr4 28301809 28301903 -127328217 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 800 24 77 0 0 chr4 28302214 28302266 -127327854 + AT_rich Low_complexity Low_complexity 1 52 0 4 800 473 302 46 35 chr4 28303507 28303717 -127326403 - MLT1F2 LTR MaLR 0 653 341 4 800 318 26 0 0 chr4 28304935 28304974 -127325146 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 800 504 59 0 0 chr4 28305033 28305101 -127325019 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 800 371 342 30 51 chr4 28306707 28306904 -127323216 + MLT1A LTR MaLR 21 213 -161 4 800 398 317 68 72 chr4 28306933 28307072 -127323048 - Lx8 LINE L1 -2 7471 7334 4 800 1486 88 51 0 chr4 28307072 28307287 -127322833 - L1_Mus1 LINE L1 -1 6566 6341 4 800 398 317 68 72 chr4 28307287 28307311 -127322809 - Lx8 LINE L1 -140 7333 7317 4 800 288 0 0 0 chr4 28307311 28307343 -127322777 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 800 441 0 0 0 chr4 28307343 28307391 -127322729 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 800 558 0 0 0 chr4 28307392 28307454 -127322666 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 800 398 317 68 72 chr4 28307454 28307551 -127322569 - Lx8 LINE L1 -157 7316 7209 4 800 299 379 12 18 chr4 28307589 28307753 -127322367 + MLT1A LTR MaLR 210 372 -2 4 800 2387 211 63 38 chr4 28308454 28309010 -127321110 + RLTR18 LTR ERVK 18 587 -29 4 800 346 95 15 31 chr4 28309008 28309073 -127321047 + RLTR18 LTR ERVK 172 235 -381 4 800 1605 59 27 9 chr4 28309161 28309228 -127320892 + L1_Mus1 LINE L1 6341 6407 -160 4 800 1074 58 15 0 chr4 28309228 28309365 -127320755 + B1_Mus1 SINE Alu 2 140 -8 4 800 318 50 0 0 chr4 28309365 28309405 -127320715 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 4 800 1605 59 27 9 chr4 28309405 28309559 -127320561 + L1_Mus1 LINE L1 6408 6566 -1 4 800 6640 132 43 6 chr4 28309876 28311445 -127318675 - Lx LINE L1 -1 6653 5047 4 801 3573 53 7 4 chr4 28312257 28312707 -127317413 + L1Md_F2 LINE L1 6132 6582 0 4 801 3459 140 0 24 chr4 28314046 28314623 -127315497 + Lx3A LINE L1 6418 6980 -1 4 801 426 342 94 26 chr4 28314905 28315097 -127315023 + LTR33 LTR ERVL 15 219 -296 4 801 261 377 175 19 chr4 28315983 28316194 -127313926 - LTR50 LTR ERVL -551 244 1 4 801 608 282 50 22 chr4 28316399 28316580 -127313540 + Lx8 LINE L1 7147 7332 -141 4 801 21 57 0 0 chr4 28316688 28316723 -127313397 + AT_rich Low_complexity Low_complexity 1 35 0 4 801 328 361 17 48 chr4 28318594 28318885 -127311235 - ERVL-E-int LTR ERVL -5245 422 141 5 801 186 133 0 0 chr4 28319672 28319702 -127310418 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 801 367 277 0 0 chr4 28319846 28319929 -127310191 + Lx8 LINE L1 7249 7331 -142 5 801 189 74 0 0 chr4 28319930 28319957 -127310163 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 801 4751 116 26 3 chr4 28320801 28321723 -127308397 - Lx3B LINE L1 -624 6349 5396 5 801 3287 172 60 2 chr4 28321723 28322327 -127307793 + Lx3B LINE L1 6331 6969 -4 5 801 649 158 14 0 chr4 28322340 28322479 -127307641 + GA-rich Low_complexity Low_complexity 2 142 0 5 801 208 284 8 41 chr4 28322594 28322715 -127307405 + A-rich Low_complexity Low_complexity 3 119 0 5 801 324 212 10 29 chr4 28322715 28322817 -127307303 - Lx7 LINE L1 -279 7417 7318 5 801 391 294 85 96 chr4 28322950 28323221 -127306899 + RLTR26 LTR ERVK 168 435 -207 5 801 4794 257 101 29 chr4 28323243 28324509 -127305611 - Lx7 LINE L1 -1057 6639 5255 5 801 468 0 0 0 chr4 28324509 28324561 -127305559 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 801 4794 246 62 62 chr4 28324561 28325835 -127304285 - Lx7 LINE L1 -626 5254 3984 5 801 317 277 9 9 chr4 28325841 28325954 -127304166 - Lx7 LINE L1 -1860 4020 3908 5 801 2201 98 3 0 chr4 28325952 28326258 -127303862 + Lx3B LINE L1 5479 5785 -101 5 801 1788 163 67 6 chr4 28326258 28326615 -127303505 + Lx LINE L1 6275 6653 -1 5 801 6206 161 34 17 chr4 28326622 28327329 -127302791 + Lx3B LINE L1 5783 6493 -480 5 801 243 73 55 0 chr4 28327329 28327384 -127302736 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 801 6206 161 34 17 chr4 28327384 28327842 -127302278 + Lx3B LINE L1 6494 6968 -5 5 801 403 213 70 96 chr4 28327882 28328069 -127302051 - Lx7 LINE L1 -1985 3895 3714 5 801 588 53 0 0 chr4 28328069 28328145 -127301975 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 801 465 19 0 0 chr4 28328145 28328199 -127301921 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 5 801 2073 230 117 14 chr4 28328227 28328990 -127301130 - Lx7 LINE L1 -2133 3747 2907 5 801 1105 234 28 23 chr4 28328974 28329328 -127300792 - Lx7 LINE L1 -3127 2753 2398 5 801 207 209 0 0 chr4 28329347 28329390 -127300730 + T-rich Low_complexity Low_complexity 1 43 0 5 801 7711 117 17 27 chr4 28329394 28331483 -127298637 - L1_Mus3 LINE L1 -2 6636 4573 5 801 3214 136 19 11 chr4 28331528 28332062 -127298058 - Lx2A LINE L1 -2 7006 6469 5 801 11473 191 19 21 chr4 28332084 28334432 -127295688 - Lx2A LINE L1 -975 6083 3748 5 801 4977 102 141 0 chr4 28334432 28335208 -127294912 - L1_Mus3 LINE L1 -2 6636 5752 5 801 11473 189 19 22 chr4 28335208 28335472 -127294648 - Lx2A LINE L1 -2130 3747 3478 5 801 189 107 0 0 chr4 28335472 28335500 -127294620 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 801 11473 189 19 22 chr4 28335500 28335539 -127294581 - Lx2A LINE L1 -2400 3477 3433 5 801 217 116 57 14 chr4 28335545 28335615 -127294505 + (TTATA)n Simple_repeat Simple_repeat 3 75 0 5 801 207 0 0 0 chr4 28335634 28335657 -127294463 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 801 665 218 51 0 chr4 28335661 28335877 -127294243 - MusHAL1 LINE L1 -1868 844 618 5 801 6746 85 1 4 chr4 28335929 28336888 -127293232 + L1Md_F LINE L1 366 1325 -5399 5 801 4407 39 2 0 chr4 28336889 28337409 -127292711 + L1Md_F2 LINE L1 6048 6568 -14 5 801 434 317 23 58 chr4 28337415 28337589 -127292531 + B4A SINE B4 81 248 -44 5 801 708 224 0 0 chr4 28339097 28339262 -127290858 + (TG)n Simple_repeat Simple_repeat 1 165 0 5 801 207 91 0 29 chr4 28339264 28339298 -127290822 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 5 801 1424 82 62 5 chr4 28339299 28339507 -127290613 + IAPLTR1a_Mm LTR ERVK 1 220 -117 5 801 56857 18 4 1 chr4 28339539 28345963 -127284157 + IAPEz-int LTR ERVK 10 6481 0 5 801 2079 85 38 62 chr4 28345963 28346303 -127283817 + IAPLTR1a_Mm LTR ERVK 1 332 -5 5 801 227 247 14 0 chr4 28346304 28346377 -127283743 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 801 1879 313 111 45 chr4 28346463 28347504 -127282616 + Lx8 LINE L1 6347 7456 -17 5 801 1410 244 72 14 chr4 28347942 28348319 -127281801 + MTC LTR MaLR 8 399 -22 5 801 25 0 0 0 chr4 28348499 28348524 -127281596 + AT_rich Low_complexity Low_complexity 1 25 0 5 801 281 322 33 50 chr4 28350600 28350721 -127279399 + MIR SINE MIR 68 186 -76 5 801 29 28 0 0 chr4 28351002 28351038 -127279082 + AT_rich Low_complexity Low_complexity 1 36 0 5 801 954 304 61 16 chr4 28351085 28351462 -127278658 + Lx9 LINE L1 6389 6782 -862 5 801 186 43 0 0 chr4 28351903 28351926 -127278194 + (CACCAT)n Simple_repeat Simple_repeat 4 26 0 5 801 2781 355 41 60 chr4 28351959 28353615 -127276505 - RodERV21-int LTR ERV1 -195 4796 3158 5 801 909 0 0 0 chr4 28353615 28353716 -127276404 + (GAA)n Simple_repeat Simple_repeat 2 102 0 5 801 2781 355 41 60 chr4 28353716 28354178 -127275942 - RodERV21-int LTR ERV1 -1834 3157 2718 5 801 2949 60 8 0 chr4 28355595 28355980 -127274140 + MTA_Mm LTR MaLR 1 388 -8 5 801 292 332 33 56 chr4 28356017 28356323 -127273797 - MER52-int LTR ERV1 -3188 3903 3605 5 801 2364 90 42 0 chr4 28356438 28356793 -127273327 + BGLII LTR ERVK 52 421 0 5 801 766 184 15 48 chr4 28357120 28357326 -127272794 + RMER3D-int LTR ERVK 652 850 -1992 5 801 1350 137 43 28 chr4 28357474 28357729 -127272391 + BGLII LTR ERVK 163 421 0 5 801 717 265 142 18 chr4 28357735 28358065 -127272055 - RodERV21-int LTR ERV1 -3997 994 624 5 801 387 0 0 0 chr4 28358183 28358226 -127271894 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 801 575 293 79 47 chr4 28358275 28358554 -127271566 - RodERV21-int LTR ERV1 -4676 315 28 5 801 559 281 63 52 chr4 28358554 28358824 -127271296 + Lx9 LINE L1 6943 7215 -429 5 801 29 0 0 0 chr4 28358916 28358945 -127271175 + AT_rich Low_complexity Low_complexity 1 29 0 5 801 2586 173 134 19 chr4 28359090 28359708 -127270412 + RMER6C LTR ERVK 1 689 -1 5 801 21 0 0 0 chr4 28360543 28360564 -127269556 + AT_rich Low_complexity Low_complexity 1 21 0 5 801 324 22 0 22 chr4 28361262 28361335 -127268785 - L1Md_F3 LINE L1 0 6584 6518 5 801 185 59 0 56 chr4 28361386 28361422 -127268698 + (CAGAGA)n Simple_repeat Simple_repeat 5 38 0 5 801 288 391 52 39 chr4 28361677 28361906 -127268214 + LTR40b LTR ERVL 162 393 -69 5 801 650 156 17 6 chr4 28361921 28362095 -127268025 + (TCTA)n Simple_repeat Simple_repeat 4 179 0 5 801 198 0 0 0 chr4 28362584 28362606 -127267514 + (T)n Simple_repeat Simple_repeat 1 22 0 5 801 7471 128 18 9 chr4 28363405 28364608 -127265512 + Lx3_Mus LINE L1 5784 6997 -12 5 801 309 51 0 0 chr4 28364611 28364650 -127265470 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 801 231 352 23 64 chr4 28364918 28365091 -127265029 + L2c LINE L2 3222 3387 0 5 801 309 341 87 22 chr4 28365218 28365356 -127264764 - HAL1-3A_ME LINE L1 -428 2430 2284 5 801 454 218 0 0 chr4 28365358 28365445 -127264675 - B1_Mm SINE Alu 0 147 61 5 801 4387 135 25 32 chr4 28365445 28366202 -127263918 - L1_Mur1 LINE L1 -103 5783 5032 5 801 417 39 0 0 chr4 28366591 28366642 -127263478 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 801 252 0 0 0 chr4 28366642 28366669 -127263451 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 5 801 236 260 67 27 chr4 28367544 28367619 -127262501 + MLT1G3 LTR MaLR 440 517 -78 5 801 207 0 0 0 chr4 28367665 28367688 -127262432 + (A)n Simple_repeat Simple_repeat 1 23 0 5 801 396 263 103 23 chr4 28369780 28370047 -127260073 + L1M3 LINE L1 5293 5543 -757 5 801 3433 181 33 6 chr4 28370047 28370708 -127259412 + Lx LINE L1 5976 6654 0 5 801 303 291 80 108 chr4 28370708 28370899 -127259221 + L1M3 LINE L1 5544 5742 -558 5 801 5870 190 78 24 chr4 28371214 28371268 -127258852 - Lx5 LINE L1 0 7050 7000 5 801 192 77 0 0 chr4 28371268 28371294 -127258826 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 801 5870 191 79 25 chr4 28371294 28372552 -127257568 - Lx5 LINE L1 -51 6999 5691 5 801 846 249 195 81 chr4 28372571 28372864 -127257256 + MT2A LTR ERVL 95 458 -75 5 801 360 119 0 0 chr4 28372864 28372923 -127257197 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 801 846 249 195 81 chr4 28372923 28373023 -127257097 + MT2A LTR ERVL 459 533 0 5 801 294 246 99 26 chr4 28373137 28373290 -127256830 + L1_Mur3 LINE L1 5290 5447 -912 5 801 360 0 0 0 chr4 28373306 28373346 -127256774 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 801 615 27 0 0 chr4 28373593 28373666 -127256454 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 801 1635 26 0 20 chr4 28373751 28373948 -127256172 - B2_Mm1t SINE B2 0 193 1 5 801 261 0 0 0 chr4 28374725 28374754 -127255366 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 801 22 56 0 0 chr4 28376020 28376056 -127254064 + AT_rich Low_complexity Low_complexity 1 36 0 5 801 259 372 27 0 chr4 28377568 28377716 -127252404 - ERVL-int LTR ERVL -929 4828 4677 5 801 402 167 0 0 chr4 28377886 28377970 -127252150 + GA-rich Low_complexity Low_complexity 1 84 0 5 801 264 289 62 27 chr4 28379937 28380135 -127249985 - L1MA9 LINE L1 -124 6210 6004 5 801 484 287 66 48 chr4 28380134 28380405 -127249715 + L1M2 LINE L1 5535 5810 -490 5 801 305 282 0 14 chr4 28381494 28381566 -127248554 + L1MEg LINE L1 1882 1952 -4132 5 801 192 111 0 0 chr4 28381569 28381605 -127248515 + (A)n Simple_repeat Simple_repeat 1 36 0 5 801 264 336 0 34 chr4 28382431 28382488 -127247632 + polypyrimidine Low_complexity Low_complexity 59 113 0 5 801 678 58 0 0 chr4 28382488 28382575 -127247545 + (TCCCC)n Simple_repeat Simple_repeat 5 91 0 5 801 264 336 0 34 chr4 28382575 28382634 -127247486 + polypyrimidine Low_complexity Low_complexity 1 58 0 5 801 966 206 82 22 chr4 28382772 28383040 -127247080 - Lx9 LINE L1 -8 7636 7353 5 801 679 223 165 6 chr4 28383837 28384013 -127246107 - B3 SINE B2 -12 204 1 5 801 4901 11 0 0 chr4 28384937 28385485 -127244635 - L1Md_T LINE L1 0 6582 6035 5 801 851 80 0 0 chr4 28385707 28385820 -127244300 - L1_Mus2 LINE L1 -235 6331 6219 5 801 5394 79 8 11 chr4 28385816 28387003 -127243117 + L1_Mus2 LINE L1 5081 6256 -310 5 801 444 160 21 0 chr4 28388509 28388603 -127241517 - L1Md_A LINE L1 0 6582 6487 5 801 35392 35 0 0 chr4 28388653 28394027 -127236093 + L1Md_T LINE L1 121 5589 -297 5 801 8993 5 0 0 chr4 28394027 28395054 -127235066 + L1Md_T LINE L1 5590 6585 0 5 801 761 136 16 0 chr4 28395482 28395607 -127234513 + B1_Mus1 SINE Alu 1 127 -21 5 801 480 18 0 0 chr4 28395843 28395900 -127234220 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 801 32 43 0 0 chr4 28397295 28397341 -127232779 + AT_rich Low_complexity Low_complexity 1 46 0 5 801 21 57 0 0 chr4 28397596 28397631 -127232489 + AT_rich Low_complexity Low_complexity 1 35 0 5 801 336 143 0 0 chr4 28397729 28397785 -127232335 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 801 1806 271 158 22 chr4 28397869 28398756 -127231364 - Lx7 LINE L1 -396 7300 6294 5 801 1276 18 22 44 chr4 28398976 28399156 -127230964 - L1Md_F3 LINE L1 0 6584 6409 5 801 264 325 46 14 chr4 28399157 28399318 -127230802 - MTD LTR MaLR -29 390 206 5 801 238 269 183 0 chr4 28400010 28400114 -127230006 - Lx7 LINE L1 -15 7681 7559 6 801 1517 206 16 19 chr4 28400206 28400523 -127229597 - Lx7 LINE L1 -284 7412 7097 6 801 22 0 0 0 chr4 28401136 28401158 -127228962 + AT_rich Low_complexity Low_complexity 1 22 0 6 801 288 77 0 0 chr4 28402136 28402175 -127227945 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 801 189 0 0 0 chr4 28402175 28402195 -127227925 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 801 1193 291 176 50 chr4 28402222 28402513 -127227607 + L1_Mur3 LINE L1 1286 1612 -4268 6 801 1893 194 25 22 chr4 28402513 28402918 -127227202 - MTB_Mm LTR MaLR -1 406 1 6 801 1193 291 176 50 chr4 28402918 28404392 -127225728 + L1_Mur3 LINE L1 1613 3273 -2607 6 801 468 357 64 0 chr4 28404526 28404666 -127225454 + B3A SINE B2 2 150 -48 6 801 471 155 0 0 chr4 28404788 28404872 -127225248 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 801 259 72 0 45 chr4 28405199 28405243 -127224877 - RMER19C LTR ERVK -5 606 565 6 801 405 0 0 0 chr4 28406498 28406543 -127223577 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 801 22 56 0 0 chr4 28406814 28406850 -127223270 + AT_rich Low_complexity Low_complexity 1 36 0 6 801 652 295 36 10 chr4 28406850 28407042 -127223078 - B3A SINE B2 -1 197 1 6 801 236 316 35 0 chr4 28407053 28407110 -127223010 - ID4_ SINE ID -2 81 23 6 801 547 14 28 0 chr4 28407111 28407183 -127222937 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 801 22 35 0 0 chr4 28407192 28407221 -127222899 + AT_rich Low_complexity Low_complexity 1 29 0 6 801 220 365 70 23 chr4 28407334 28407463 -127222657 - ID_B1 SINE B4 -11 213 79 6 801 234 0 0 0 chr4 28407469 28407495 -127222625 + (T)n Simple_repeat Simple_repeat 1 26 0 6 801 231 125 0 0 chr4 28410200 28410240 -127219880 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 801 2323 269 80 6 chr4 28410957 28411619 -127218501 - Lx6 LINE L1 -11 7449 6739 6 801 1261 259 0 32 chr4 28411668 28411979 -127218141 - Lx6 LINE L1 -895 6565 6265 6 801 1503 245 48 64 chr4 28411978 28412254 -127217866 - Lx7 LINE L1 -1570 6126 5842 6 801 1986 184 8 8 chr4 28412254 28412621 -127217499 - ORR1B2 LTR MaLR 0 367 1 6 801 405 0 0 0 chr4 28412631 28412676 -127217444 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 801 1503 245 48 64 chr4 28412676 28412758 -127217362 - Lx7 LINE L1 -1874 5822 5743 6 801 957 94 0 0 chr4 28412758 28412896 -127217224 + (TC)n Simple_repeat Simple_repeat 1 138 0 6 801 1503 245 48 64 chr4 28412896 28412923 -127217197 - Lx7 LINE L1 -1954 5742 5736 6 801 1118 90 0 0 chr4 28412923 28413068 -127217052 - B1_Mus2 SINE Alu -2 145 1 6 801 1503 245 48 64 chr4 28413068 28413171 -127216949 - Lx7 LINE L1 -1961 5735 5633 6 801 2035 240 24 4 chr4 28413656 28414163 -127215957 - Lx7 LINE L1 -282 5598 5082 6 801 3233 46 8 0 chr4 28414696 28415089 -127215031 - MTA_Mm LTR MaLR 0 396 1 6 801 385 324 80 7 chr4 28415450 28415587 -127214533 + MTE2b LTR MaLR 1 147 -232 6 801 913 306 155 18 chr4 28415611 28416179 -127213941 - Tigger6b DNA MER2_type -264 1333 688 6 801 513 319 102 10 chr4 28416187 28416393 -127213727 + MTE2b LTR MaLR 3 227 -152 6 801 524 272 107 25 chr4 28416650 28416846 -127213274 + RMER21B LTR ERV1 347 558 -284 6 801 3077 239 100 24 chr4 28416909 28417736 -127212384 + RodERV21-int LTR ERV1 1 890 -4101 6 801 533 274 46 91 chr4 28418027 28418390 -127211730 + RLTR42-int LTR ERVK 1104 1332 -4190 6 801 253 303 98 0 chr4 28418489 28418611 -127211509 + RLTR42-int LTR ERVK 1641 1774 -3748 6 801 231 114 0 0 chr4 28418613 28418648 -127211472 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 801 4100 237 53 19 chr4 28418690 28419722 -127210398 + RodERV21-int LTR ERV1 1016 2114 -2877 6 801 293 282 12 0 chr4 28419882 28419967 -127210153 + RodERV21-int LTR ERV1 3360 3445 -1546 6 801 4969 216 38 5 chr4 28420004 28421027 -127209093 + RodERV21-int LTR ERV1 3770 4826 -165 6 801 276 341 77 0 chr4 28421028 28421119 -127209001 + RMER4B LTR ERVK 346 443 -142 6 801 501 298 143 24 chr4 28421224 28421447 -127208673 + RMER21B LTR ERV1 350 686 -261 6 801 1378 306 95 70 chr4 28421480 28422615 -127207505 + MTE-int LTR MaLR 182 1489 -91 6 801 261 57 0 0 chr4 28422615 28422650 -127207470 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 801 835 329 28 94 chr4 28422704 28422838 -127207282 + MTEa LTR MaLR 38 161 -218 6 801 394 311 88 73 chr4 28422838 28423043 -127207077 + B3 SINE B2 2 209 -7 6 801 835 329 28 94 chr4 28423043 28423270 -127206850 + MTEa LTR MaLR 162 375 -4 6 801 380 362 29 0 chr4 28423408 28423546 -127206574 + RSINE1 SINE B4 2 143 -22 6 801 525 121 0 0 chr4 28423549 28423632 -127206488 + (CA)n Simple_repeat Simple_repeat 1 83 0 6 801 396 315 77 0 chr4 28423729 28423859 -127206261 + B1_Mur2 SINE Alu 1 140 -9 6 801 313 322 45 28 chr4 28424340 28424516 -127205604 - Tigger6b DNA MER2_type -1366 231 53 6 801 1457 249 53 0 chr4 28424898 28425236 -127204884 - MTD LTR MaLR -8 411 56 6 801 4002 190 80 10 chr4 28425249 28426026 -127204094 + Lx5 LINE L1 6184 7014 -36 6 801 306 0 0 0 chr4 28426071 28426105 -127204015 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 801 589 318 5 30 chr4 28426322 28426523 -127203597 - B3 SINE B2 -4 212 17 6 801 5497 51 3 0 chr4 28427226 28427913 -127202207 - L1Md_F2 LINE L1 0 6582 5894 6 801 33 43 0 0 chr4 28428005 28428052 -127202068 + AT_rich Low_complexity Low_complexity 1 47 0 6 801 323 57 71 0 chr4 28428420 28428490 -127201630 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 6 801 21 36 0 0 chr4 28429044 28429072 -127201048 + AT_rich Low_complexity Low_complexity 1 28 0 6 801 268 207 63 84 chr4 28429912 28430007 -127200113 - MTE2a LTR MaLR -7 372 280 6 801 588 294 29 52 chr4 28430938 28431286 -127198834 + ORSL-2b DNA Tip100 73 412 -96 6 801 681 242 128 5 chr4 28432735 28432922 -127197198 + MTD LTR MaLR 206 415 -4 6 801 272 37 0 69 chr4 28433095 28433153 -127196967 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 801 210 36 16 82 chr4 28433212 28433273 -127196847 + (CATAT)n Simple_repeat Simple_repeat 2 58 0 6 801 206 241 0 0 chr4 28433275 28433329 -127196791 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 801 1123 84 114 0 chr4 28433368 28433535 -127196585 + B2_Mm2 SINE B2 1 186 -9 6 801 413 368 72 0 chr4 28433546 28433698 -127196422 - RSINE1 SINE B4 0 165 3 6 801 330 26 0 0 chr4 28433888 28433927 -127196193 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 801 470 260 31 8 chr4 28433935 28434063 -127196057 - B1F2 SINE Alu -17 132 2 6 801 4501 128 71 5 chr4 28434604 28435361 -127194759 - RMER17D2 LTR ERVK -2 807 1 6 801 26 50 0 0 chr4 28436228 28436268 -127193852 + AT_rich Low_complexity Low_complexity 1 40 0 6 801 395 313 181 42 chr4 28436389 28436792 -127193328 - MLT1D LTR MaLR -8 497 39 6 801 227 140 20 0 chr4 28437933 28437983 -127192137 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 801 844 219 11 107 chr4 28438784 28439065 -127191055 - L1_Mur1 LINE L1 -6717 265 12 6 801 27574 117 47 24 chr4 28439161 28441767 -127188353 + Lx3_Mus LINE L1 690 3439 -2447 6 801 2783 25 0 0 chr4 28441767 28442089 -127188031 + RLTRETN_Mm LTR ERVK 1 322 0 6 100 27574 109 25 26 chr4 28442089 28443154 -127186966 + Lx3_Mus LINE L1 3440 4452 -1434 6 802 1644 16 5 5 chr4 28443154 28443347 -127186773 + B2_Mm1a SINE B2 1 193 0 6 802 27574 101 22 28 chr4 28443347 28445903 -127184217 + Lx3_Mus LINE L1 4453 7009 0 6 802 423 0 0 0 chr4 28445992 28446039 -127184081 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 802 480 48 0 0 chr4 28446079 28446142 -127183978 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 802 21 0 0 0 chr4 28446907 28446928 -127183192 + AT_rich Low_complexity Low_complexity 1 21 0 6 802 821 20 20 0 chr4 28449000 28449102 -127181018 + (TTTTC)n Simple_repeat Simple_repeat 5 108 0 6 802 1920 147 6 16 chr4 28449102 28449421 -127180699 - Lx2 LINE L1 -6 6991 6676 6 802 1062 93 0 0 chr4 28450025 28450164 -127179956 + B1_Mus2 SINE Alu 1 139 -8 6 802 225 0 0 0 chr4 28450164 28450189 -127179931 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 802 639 175 0 0 chr4 28451988 28452142 -127177978 + (TG)n Simple_repeat Simple_repeat 2 155 0 6 802 327 150 0 0 chr4 28452857 28452917 -127177203 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 802 674 215 14 22 chr4 28454103 28454241 -127175879 + B1_Mus2 SINE Alu 11 147 0 6 802 22 35 0 0 chr4 28454403 28454432 -127175688 + AT_rich Low_complexity Low_complexity 1 29 0 6 802 9361 119 24 1 chr4 28454515 28455899 -127174221 + Lx2A1 LINE L1 5590 7004 -4 6 802 287 252 48 73 chr4 28456209 28456333 -127173787 + RMER12 LTR ERVK 736 856 -466 6 802 1703 237 170 23 chr4 28457036 28457554 -127172566 - RMER19B LTR ERVK 0 902 309 6 802 235 336 9 9 chr4 28458337 28458448 -127171672 - L1MCc LINE L1 -5535 888 778 6 802 805 271 5 25 chr4 28459834 28460045 -127170075 + B3A SINE B2 2 211 -5 6 802 222 37 0 0 chr4 28460103 28460130 -127169990 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 802 3674 118 55 0 chr4 28460162 28460712 -127169408 - MT2B2 LTR ERVL 0 584 5 6 802 3864 187 73 11 chr4 28461676 28462471 -127167649 + Lx4B LINE L1 6215 7058 0 6 802 442 351 56 3 chr4 28464181 28464467 -127165653 + L1MC3 LINE L1 7240 7540 -245 6 802 1778 164 164 8 chr4 28464861 28465313 -127164807 - Lx3C LINE L1 -1 6980 6433 6 802 5716 146 15 4 chr4 28465310 28466327 -127163793 - L1_Mur1 LINE L1 -1599 4287 3260 6 802 360 67 67 0 chr4 28466327 28466387 -127163733 - L1Md_F2 LINE L1 0 6582 6519 6 802 5030 186 35 51 chr4 28466387 28468382 -127161738 - L1_Mur1 LINE L1 -3722 2164 210 6 802 30 45 0 0 chr4 28468466 28468510 -127161610 + AT_rich Low_complexity Low_complexity 1 44 0 6 802 551 15 15 0 chr4 28468966 28469034 -127161086 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 6 802 252 0 0 0 chr4 28469301 28469329 -127160791 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 802 360 0 0 0 chr4 28469329 28469369 -127160751 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 802 410 385 7 7 chr4 28469423 28469559 -127160561 - MamSINE1 SINE tRNA -153 137 2 6 802 808 119 13 38 chr4 28469913 28470070 -127160050 - L1_Mus3 LINE L1 -5 6633 6481 6 802 21 57 0 0 chr4 28470461 28470496 -127159624 + AT_rich Low_complexity Low_complexity 1 35 0 6 802 21 0 0 0 chr4 28470699 28470720 -127159400 + AT_rich Low_complexity Low_complexity 1 21 0 6 802 2876 275 57 101 chr4 28471167 28471481 -127158639 + Lx7 LINE L1 6245 6572 -1124 6 802 4825 125 4 4 chr4 28471481 28472226 -127157894 + Lx LINE L1 5909 6653 -1 7 802 2876 275 57 101 chr4 28472226 28473422 -127156698 + Lx7 LINE L1 6573 7687 -9 6 802 443 217 22 0 chr4 28473423 28473515 -127156605 + B1_Mur4 SINE Alu 2 95 -55 7 802 396 205 24 0 chr4 28473621 28473704 -127156416 - MLT1A1 LTR MaLR 0 408 324 7 802 753 274 23 32 chr4 28473861 28474080 -127156040 - URR1B DNA MER1_type -7 218 2 7 802 21 57 0 0 chr4 28474350 28474385 -127155735 + AT_rich Low_complexity Low_complexity 1 35 0 7 802 235 67 0 0 chr4 28474406 28474451 -127155669 - L1_Mus4 LINE L1 0 6636 6592 7 802 442 219 19 0 chr4 28476388 28476604 -127153516 + (TG)n Simple_repeat Simple_repeat 1 220 0 7 802 279 0 0 0 chr4 28477285 28477316 -127152804 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 802 430 289 0 0 chr4 28477531 28477628 -127152492 - MTD LTR MaLR -322 97 1 7 802 338 309 0 0 chr4 28477844 28477954 -127152166 + (TA)n Simple_repeat Simple_repeat 2 111 0 7 802 528 135 0 0 chr4 28477955 28478066 -127152054 + (CATA)n Simple_repeat Simple_repeat 3 113 0 7 802 2220 267 91 22 chr4 28478732 28479537 -127150583 + RMER13A LTR ERVK 1 860 0 7 802 321 26 0 0 chr4 28479873 28479911 -127150209 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 802 22 0 0 0 chr4 28479987 28480009 -127150111 + AT_rich Low_complexity Low_complexity 1 22 0 7 802 378 0 0 0 chr4 28480009 28480051 -127150069 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 802 350 378 36 28 chr4 28480275 28480528 -127149592 + L2 LINE L2 2667 2921 -498 7 802 573 304 158 26 chr4 28480571 28480844 -127149276 + RMER21A LTR ERV1 381 689 -258 7 802 2234 201 127 6 chr4 28481269 28481780 -127148340 - RMER15 LTR ERVL 0 575 3 7 802 511 313 41 54 chr4 28481910 28482204 -127147916 - MLT2B4 LTR ERVL -250 306 17 7 802 694 369 25 0 chr4 28482228 28482507 -127147613 + MTE2b LTR MaLR 1 286 -93 7 802 600 14 0 0 chr4 28482519 28482588 -127147532 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 7 802 204 40 0 0 chr4 28486242 28486267 -127143853 + (GAA)n Simple_repeat Simple_repeat 2 26 0 7 802 22 56 0 0 chr4 28486595 28486631 -127143489 + AT_rich Low_complexity Low_complexity 1 36 0 7 802 2763 107 19 5 chr4 28488413 28488828 -127141292 + BGLII LTR ERVK 1 421 0 7 802 230 0 0 32 chr4 28489076 28489107 -127141013 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 802 306 357 46 15 chr4 28489331 28489462 -127140658 - MER2 DNA MER2_type -7 338 204 7 802 189 200 52 52 chr4 28489909 28489967 -127140153 - MIRm SINE MIR -2 274 217 7 802 933 50 0 0 chr4 28490327 28490446 -127139674 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 7 802 231 114 0 0 chr4 28491278 28491313 -127138807 + (A)n Simple_repeat Simple_repeat 1 35 0 7 802 813 239 102 11 chr4 28491960 28492226 -127137894 - L1MB8 LINE L1 -6 6172 5883 7 802 1582 259 48 8 chr4 28493285 28493663 -127136457 + Lx5 LINE L1 6610 7002 -48 7 802 252 228 53 0 chr4 28495068 28495125 -127134995 - L2a LINE L2 -5 3421 3362 7 802 401 343 72 6 chr4 28495314 28495481 -127134639 - MER45A DNA Tip100 0 178 1 7 802 251 231 192 0 chr4 28495714 28495792 -127134328 + MER5A1 DNA MER1_type 50 142 -24 7 802 1711 200 42 89 chr4 28496039 28496467 -127133653 - MTC LTR MaLR -8 413 6 7 802 378 42 0 0 chr4 28497031 28497079 -127133041 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 802 183 211 15 123 chr4 28497117 28497182 -127132938 - L2a LINE L2 -563 2856 2799 7 802 207 0 0 0 chr4 28497647 28497670 -127132450 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 802 621 265 101 21 chr4 28497706 28497895 -127132225 - Lx9 LINE L1 -710 6934 6731 7 802 423 0 0 0 chr4 28497970 28498017 -127132103 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 7 802 1450 242 34 39 chr4 28498793 28499180 -127130940 + MTD LTR MaLR 1 385 -34 7 802 650 54 0 97 chr4 28499180 28499283 -127130837 + L1_Mus3 LINE L1 6035 6127 -511 7 802 490 95 0 23 chr4 28499285 28499371 -127130749 + L1_Mus3 LINE L1 6551 6634 -4 7 802 7810 68 2 2 chr4 28500000 28501702 -127128418 + L1Md_F2 LINE L1 4894 6582 0 1 802 626 385 8 8 chr4 28501770 28502016 -127128104 + B4A SINE B4 2 247 -45 2 802 654 306 42 16 chr4 28502344 28502533 -127127587 + B3 SINE B2 1 194 -22 3 802 495 0 0 0 chr4 28502533 28502588 -127127532 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 802 273 119 0 0 chr4 28503733 28503775 -127126345 + (AGGGGG)n Simple_repeat Simple_repeat 3 44 0 5 802 228 333 10 94 chr4 28504475 28504571 -127125549 + MTEa LTR MaLR 21 108 -271 6 802 24 32 0 0 chr4 28506281 28506312 -127123808 + AT_rich Low_complexity Low_complexity 1 31 0 7 802 23 0 0 0 chr4 28506342 28506365 -127123755 + AT_rich Low_complexity Low_complexity 1 23 0 8 802 1471 270 43 64 chr4 28506821 28506899 -127123221 - RLTR20C LTR ERVK -14 520 444 9 802 225 0 0 0 chr4 28506899 28506924 -127123196 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 802 1471 270 43 64 chr4 28506924 28507376 -127122744 - RLTR20C LTR ERVK -91 443 2 9 802 1932 189 49 0 chr4 28507381 28507789 -127122331 - MYSERV16_I-int LTR ERVK -5 2321 1894 9 802 2471 180 113 9 chr4 28507809 28508447 -127121673 - MYSERV16_I-int LTR ERVK -520 1806 1103 9 802 4160 189 52 30 chr4 28508449 28509411 -127120709 - MYSERV16_I-int LTR ERVK -1489 1353 1 9 802 21 82 0 0 chr4 28509506 28509555 -127120565 + AT_rich Low_complexity Low_complexity 1 49 0 1 802 489 219 20 20 chr4 28509699 28509797 -127120323 - RLTR20C LTR ERVK 0 534 437 1 802 1898 237 56 29 chr4 28509818 28510340 -127119780 - RLTR20A2 LTR ERVK -42 536 1 1 802 223 363 96 40 chr4 28510926 28510965 -127119155 - B3 SINE B2 -6 210 2 1 802 371 365 44 19 chr4 28510965 28511124 -127118996 - RSINE1 SINE B4 0 165 3 1 802 399 288 112 46 chr4 28513014 28513402 -127116718 - L1M2 LINE L1 -1302 4838 4431 1 802 2981 132 41 0 chr4 28513519 28514002 -127116118 + Lx2 LINE L1 6492 6994 -3 1 802 477 0 0 0 chr4 28514084 28514137 -127115983 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1 802 2020 36 0 5 chr4 28514311 28514565 -127115555 + L1Md_A LINE L1 5363 5607 -566 1 802 8850 12 0 0 chr4 28514565 28515561 -127114559 + L1Md_A LINE L1 5587 6582 0 1 802 27 0 0 0 chr4 28517030 28517057 -127113063 + AT_rich Low_complexity Low_complexity 1 27 0 2 802 402 21 0 0 chr4 28517065 28517112 -127113008 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 802 278 258 15 0 chr4 28517315 28517381 -127112739 + ID4_ SINE ID 1 67 -16 2 802 191 88 29 0 chr4 28517463 28517497 -127112623 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 802 426 69 0 0 chr4 28517855 28517913 -127112207 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 802 317 269 18 36 chr4 28518006 28518118 -127112002 + L1MCa LINE L1 1853 1962 -4546 2 802 585 294 86 57 chr4 28518118 28518501 -127111619 + Lx9 LINE L1 5743 6136 -1508 2 802 425 253 11 0 chr4 28518530 28518621 -127111499 + Lx9 LINE L1 6316 6407 -1237 2 802 3264 84 9 2 chr4 28519183 28519637 -127110483 - L1_Mus3 LINE L1 -1 6637 6181 2 802 21 0 0 0 chr4 28520058 28520079 -127110041 + AT_rich Low_complexity Low_complexity 1 21 0 2 802 30341 114 19 6 chr4 28521224 28527343 -127102777 - L1_Mus1 LINE L1 0 6567 183 2 802 2358 178 25 32 chr4 28528319 28528789 -127101331 + Lx2B LINE L1 6138 6604 -396 3 802 1353 176 4 8 chr4 28528790 28529042 -127101078 + Lx2B LINE L1 6749 6999 -1 3 802 2556 125 9 26 chr4 28529076 28529503 -127100617 + Lx3B LINE L1 6546 6965 -8 3 802 25 0 0 0 chr4 28529503 28529528 -127100592 + AT_rich Low_complexity Low_complexity 1 25 0 3 802 34 99 0 0 chr4 28530016 28530127 -127099993 + AT_rich Low_complexity Low_complexity 1 111 0 3 802 243 320 51 0 chr4 28530555 28530633 -127099487 - B1F SINE Alu -67 82 1 3 802 320 330 0 65 chr4 28531408 28531531 -127098589 + PB1D9 SINE Alu 2 116 -4 3 802 380 143 14 0 chr4 28531721 28531791 -127098329 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 802 307 315 11 0 chr4 28531984 28532073 -127098047 + B4 SINE B4 159 248 -44 3 802 1412 136 60 0 chr4 28532238 28532503 -127097617 + Lx2 LINE L1 5940 6220 -777 3 802 2760 118 18 2 chr4 28532503 28532944 -127097176 + Lx2 LINE L1 6550 6997 0 3 802 2563 192 29 21 chr4 28533373 28533501 -127096619 - L1_Mur3 LINE L1 -3175 2705 2578 3 802 195 42 0 0 chr4 28533501 28533525 -127096595 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 802 2563 192 29 21 chr4 28533525 28533976 -127096144 - L1_Mur3 LINE L1 -3303 2577 2121 3 802 5967 237 61 26 chr4 28533984 28535427 -127094693 + Lx7 LINE L1 6057 7544 -152 4 802 315 0 0 0 chr4 28535427 28535462 -127094658 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 802 5967 237 61 26 chr4 28535462 28535601 -127094519 + Lx7 LINE L1 7545 7692 -4 4 802 2970 60 10 25 chr4 28535866 28536262 -127093858 + RLTR10 LTR ERVK 1 390 0 4 802 21 36 0 0 chr4 28536565 28536593 -127093527 + AT_rich Low_complexity Low_complexity 1 28 0 4 802 28 0 0 0 chr4 28537173 28537201 -127092919 + AT_rich Low_complexity Low_complexity 1 28 0 4 802 189 0 0 0 chr4 28539373 28539394 -127090726 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 802 301 77 0 0 chr4 28539776 28539828 -127090292 + L1_Mus4 LINE L1 6585 6636 0 4 802 29 106 0 0 chr4 28540050 28540163 -127089957 + AT_rich Low_complexity Low_complexity 1 113 0 4 802 315 167 26 0 chr4 28540192 28540270 -127089850 - L1Md_F2 LINE L1 -1 6581 6502 4 802 1147 287 29 62 chr4 28540301 28540687 -127089433 - ORR1D1 LTR MaLR -1 373 1 5 802 2659 268 47 13 chr4 28540687 28541384 -127088736 - ORR1D1-int LTR MaLR 0 1370 650 5 802 24615 60 1 0 chr4 28541387 28545237 -127084883 - L1Md_F2 LINE L1 -19 6563 2712 5 802 38288 53 7 8 chr4 28545520 28551810 -127078310 - L1Md_T LINE L1 0 6582 296 5 802 11281 87 1 34 chr4 28551813 28554091 -127076029 - L1Md_F LINE L1 -3159 2724 526 5 802 2059 247 76 70 chr4 28554091 28554748 -127075372 - ORR1D1-int LTR MaLR -672 698 38 5 802 866 236 0 0 chr4 28554748 28554943 -127075177 - ORR1C2-int LTR MaLR -885 624 430 5 802 866 204 23 6 chr4 28554947 28555124 -127074996 - ORR1C2-int LTR MaLR -1190 180 1 5 802 1868 199 32 5 chr4 28555124 28555498 -127074622 - ORR1C2 LTR MaLR 0 384 1 5 802 207 0 0 0 chr4 28555734 28555757 -127074363 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 802 26 0 0 0 chr4 28556228 28556254 -127073866 + AT_rich Low_complexity Low_complexity 1 26 0 5 802 520 70 23 0 chr4 28556516 28556602 -127073518 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 802 1229 244 25 48 chr4 28557433 28557747 -127072373 - MTD LTR MaLR -110 309 3 5 802 6823 158 14 3 chr4 28557778 28558934 -127071186 - Lx2B LINE L1 -5 6995 5827 5 802 13425 136 141 11 chr4 28558949 28562278 -127067842 - Lx3_Mus LINE L1 -13 6996 3003 6 802 222 37 0 0 chr4 28562278 28562305 -127067815 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 6 802 13425 151 227 11 chr4 28562305 28562416 -127067704 - Lx3_Mus LINE L1 -2884 3002 2875 6 802 186 43 0 0 chr4 28562416 28562439 -127067681 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 802 13425 168 142 11 chr4 28562439 28564442 -127065678 - Lx3_Mus LINE L1 -3012 2874 208 6 802 22159 174 37 13 chr4 28564458 28565061 -127065059 - L1VL4 LINE L1 -42 5844 5234 6 802 522 0 0 0 chr4 28565061 28565119 -127065001 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 802 22159 174 37 13 chr4 28565119 28566825 -127063295 - L1VL4 LINE L1 -653 5233 3492 6 802 315 0 0 0 chr4 28566825 28566860 -127063260 + (TTG)n Simple_repeat Simple_repeat 3 37 0 6 802 22159 180 43 19 chr4 28566860 28569724 -127060396 - L1VL4 LINE L1 -2395 3491 546 6 802 4341 61 2 6 chr4 28569724 28570376 -127059744 - L1_Mus1 LINE L1 -644 5923 5274 6 802 4372 99 5 0 chr4 28570376 28570989 -127059131 + L1_Mus1 LINE L1 5951 6566 -1 6 802 245 190 100 33 chr4 28572010 28572070 -127058050 + BLACKJACK DNA AcHobo 1279 1342 -1602 6 802 22 0 0 0 chr4 28572948 28572970 -127057150 + AT_rich Low_complexity Low_complexity 1 22 0 6 802 359 266 51 42 chr4 28573156 28573310 -127056810 - MIRb SINE MIR -22 246 82 6 802 199 400 0 0 chr4 28573314 28573384 -127056736 - MIRc SINE MIR -154 114 45 7 803 243 0 0 0 chr4 28573915 28573942 -127056178 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 803 1145 88 0 0 chr4 28573942 28574101 -127056019 - B2_Mm2 SINE B2 -36 159 1 7 803 789 295 79 31 chr4 28574333 28574725 -127055395 - MER95 LTR ERV 0 431 21 7 803 22 0 0 0 chr4 28575084 28575106 -127055014 + AT_rich Low_complexity Low_complexity 1 22 0 7 803 237 337 24 12 chr4 28576793 28576877 -127053243 - AmnSINE1 SINE SINE -319 256 172 7 803 22 0 0 0 chr4 28578078 28578100 -127052020 + AT_rich Low_complexity Low_complexity 1 22 0 7 803 25 65 0 0 chr4 28578212 28578258 -127051862 + AT_rich Low_complexity Low_complexity 1 46 0 7 803 324 333 196 40 chr4 28578466 28578626 -127051494 + L2 LINE L2 2646 2810 -609 7 803 2912 143 45 2 chr4 28578626 28579116 -127051004 - Lx LINE L1 -8 6646 6136 7 803 324 333 196 40 chr4 28579116 28579333 -127050787 + L2 LINE L2 2811 3082 -337 7 803 6834 196 14 7 chr4 28579629 28581388 -127048732 + Lx3C LINE L1 5204 6974 -2 8 803 922 329 29 47 chr4 28581435 28581881 -127048239 - Lx7 LINE L1 -334 7362 6925 8 803 2033 293 23 48 chr4 28581889 28582577 -127047543 + Lx7 LINE L1 6253 6923 -773 8 803 254 274 83 38 chr4 28582964 28583097 -127047023 - Lx9 LINE L1 -1 7643 7505 8 803 1595 263 32 60 chr4 28583099 28583929 -127046191 - Lx9 LINE L1 -968 6676 5766 8 803 3346 33 5 0 chr4 28583929 28584323 -127045797 - MTA_Mm LTR MaLR 0 396 1 8 803 4046 62 60 8 chr4 28584325 28584857 -127045263 - LTRIS2 LTR ERV1 0 564 5 8 803 1018 277 57 53 chr4 28584857 28585025 -127045095 - Lx9 LINE L1 -1879 5765 5595 8 803 806 342 116 33 chr4 28585256 28585801 -127044319 - Lx8 LINE L1 -6 7467 6878 8 803 1102 217 17 0 chr4 28585826 28586061 -127044059 + Lx3C LINE L1 6289 6527 -449 8 803 1797 129 61 90 chr4 28586061 28586437 -127043683 + RLTR9C LTR ERVK 1 365 -28 8 803 1315 249 0 0 chr4 28586452 28586745 -127043375 + Lx3C LINE L1 6522 6814 -162 8 803 312 27 0 0 chr4 28586751 28586788 -127043332 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 8 803 5363 120 19 2 chr4 28586788 28587614 -127042506 - Lx3_Mus LINE L1 -11 6998 6159 8 803 365 309 65 32 chr4 28587686 28587738 -127042382 + Lx8 LINE L1 6639 6689 -784 9 803 2834 67 219 2 chr4 28587738 28588159 -127041961 - RLTR1B LTR ERV1 0 512 1 9 803 365 309 65 32 chr4 28588159 28588260 -127041860 + Lx8 LINE L1 6690 6797 -676 9 803 4142 133 41 9 chr4 28588320 28589001 -127041119 + L1Md_F LINE L1 323 1025 -5494 9 803 34857 52 20 4 chr4 28589000 28594260 -127035860 + L1Md_T LINE L1 284 5586 -297 9 803 8292 38 0 1 chr4 28594260 28595256 -127034864 + L1Md_T LINE L1 5587 6581 -1 9 803 30550 85 9 5 chr4 28595256 28599711 -127030409 + L1Md_F2 LINE L1 1115 5585 -298 9 803 7201 81 11 1 chr4 28599712 28600684 -127029436 + L1Md_F2 LINE L1 5587 6568 -14 9 803 29 0 0 0 chr4 28600684 28600713 -127029407 + AT_rich Low_complexity Low_complexity 1 29 0 9 803 26 0 0 0 chr4 28601067 28601093 -127029027 + AT_rich Low_complexity Low_complexity 1 26 0 9 803 198 0 0 0 chr4 28601174 28601196 -127028924 + (T)n Simple_repeat Simple_repeat 1 22 0 9 803 2425 97 11 3 chr4 28602221 28602573 -127027547 + L1_Mus3 LINE L1 6275 6629 -9 9 803 512 198 202 29 chr4 28602601 28602809 -127027311 + L1MA9 LINE L1 6063 6306 -6 9 803 347 152 0 12 chr4 28603395 28603475 -127026645 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 803 24 32 0 0 chr4 28604101 28604132 -127025988 + AT_rich Low_complexity Low_complexity 1 31 0 1 803 28 29 0 0 chr4 28604187 28604222 -127025898 + AT_rich Low_complexity Low_complexity 1 35 0 1 803 954 282 68 51 chr4 28605663 28606014 -127024106 - MTD LTR MaLR -4 415 59 1 803 5737 248 94 23 chr4 28606196 28606506 -127023614 - Lx6 LINE L1 -167 7293 6980 1 803 809 114 8 0 chr4 28606506 28606638 -127023482 + (TCC)n Simple_repeat Simple_repeat 3 135 0 1 803 5737 228 76 16 chr4 28606638 28608176 -127021944 - Lx6 LINE L1 -481 6979 5330 1 803 1570 236 96 18 chr4 28608191 28608649 -127021471 + Lx6 LINE L1 6748 7241 -219 1 803 4954 142 60 3 chr4 28608697 28609544 -127020576 - ORR1A3-int LTR MaLR -191 1772 878 1 803 2715 199 37 28 chr4 28609552 28610125 -127019995 - RLTR20A2 LTR ERVK 0 578 1 1 803 1288 196 59 66 chr4 28610130 28610484 -127019636 - MT2B LTR ERVL -313 288 10 1 803 1016 164 20 25 chr4 28610402 28610602 -127019518 - ORR1A3-int LTR MaLR -1259 704 506 1 803 451 101 0 0 chr4 28610606 28610675 -127019445 - ORR1A3-int LTR MaLR -1893 70 2 1 803 715 324 37 40 chr4 28611547 28611872 -127018248 - Lx8 LINE L1 -158 7315 6992 1 803 1051 182 51 9 chr4 28611888 28612104 -127018016 - URR1B DNA MER1_type 0 225 1 1 803 575 302 16 16 chr4 28612280 28612465 -127017655 - Lx8 LINE L1 -622 6851 6667 1 803 180 0 0 0 chr4 28612994 28613014 -127017106 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1 803 1342 254 23 41 chr4 28613508 28614098 -127016022 + L1_Mur3 LINE L1 841 1426 -4454 1 803 279 272 122 12 chr4 28614310 28614392 -127015728 - MTC LTR MaLR -19 402 312 1 803 986 217 65 9 chr4 28614414 28614646 -127015474 + MTC LTR MaLR 177 421 0 1 803 235 255 0 0 chr4 28614650 28614701 -127015419 + MTC-int LTR MaLR 5 55 -1737 1 803 1954 220 34 0 chr4 28614784 28615220 -127014900 + MTC-int LTR MaLR 808 1258 0 1 803 21 0 0 0 chr4 28615809 28615830 -127014290 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 540 0 0 0 chr4 28617918 28617978 -127012142 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1 803 419 368 62 5 chr4 28618672 28618866 -127011254 + MLT1F2 LTR MaLR 317 521 -39 1 803 854 229 13 25 chr4 28618868 28619105 -127011015 + L1VL1 LINE L1 18 251 -6171 1 803 11891 55 3 3 chr4 28619104 28621317 -127008803 + L1Md_F3 LINE L1 4383 6584 0 1 803 1129 50 0 0 chr4 28621622 28621761 -127008359 + B1_Mus1 SINE Alu 1 139 -9 1 803 254 0 83 0 chr4 28621761 28621797 -127008323 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 803 21 0 0 0 chr4 28621855 28621876 -127008244 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 257 51 0 25 chr4 28622003 28622043 -127008077 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1 803 532 337 95 34 chr4 28622155 28622567 -127007553 - L1M5 LINE L1 -844 5302 4866 1 803 322 305 70 39 chr4 28622656 28622915 -127007205 + L1MA10 LINE L1 6054 6320 -14 1 803 651 333 98 80 chr4 28624769 28625079 -127005041 - MLT1F2 LTR MaLR -2 558 229 1 803 2121 66 7 3 chr4 28625079 28625369 -127004751 + L1_Mus2 LINE L1 6274 6564 -2 1 803 651 333 98 80 chr4 28625369 28625548 -127004572 - MLT1F2 LTR MaLR -332 228 60 1 803 482 321 8 0 chr4 28625702 28625836 -127004284 + B1F SINE Alu 6 140 -9 1 803 813 21 0 0 chr4 28625867 28625962 -127004158 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 1 803 289 282 0 127 chr4 28626320 28626401 -127003719 + RSINE1 SINE B4 10 80 -85 1 803 2493 137 14 12 chr4 28626401 28626822 -127003298 + BGLII_Mus LTR ERVK 1 422 0 1 803 289 282 0 127 chr4 28626822 28626858 -127003262 + RSINE1 SINE B4 81 112 -53 1 803 29 0 0 0 chr4 28627036 28627065 -127003055 + AT_rich Low_complexity Low_complexity 1 29 0 1 803 1418 123 319 9 chr4 28627065 28627385 -127002735 + Lx LINE L1 6229 6647 -7 1 803 186 103 0 0 chr4 28627899 28627928 -127002192 + (T)n Simple_repeat Simple_repeat 1 29 0 1 803 708 99 9 0 chr4 28628399 28628510 -127001610 + RLTR28 LTR ERVL 399 510 -14 1 803 551 322 21 8 chr4 28628595 28628830 -127001290 + Lx9 LINE L1 7235 7472 -172 1 803 22 88 0 0 chr4 28629478 28629535 -127000585 + AT_rich Low_complexity Low_complexity 1 57 0 1 803 459 0 0 0 chr4 28629541 28629592 -127000528 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 803 205 94 31 0 chr4 28630318 28630350 -126999770 + MIRc SINE MIR 131 163 -105 1 803 322 277 189 41 chr4 28632705 28632901 -126997219 - Lx8 LINE L1 -1067 6406 6182 1 803 510 17 0 0 chr4 28632921 28632980 -126997140 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 803 380 356 17 0 chr4 28632981 28633099 -126997021 - RSINE1 SINE B4 -44 121 2 1 803 30 0 0 0 chr4 28633912 28633942 -126996178 + AT_rich Low_complexity Low_complexity 1 30 0 1 803 2105 282 88 106 chr4 28633972 28634910 -126995210 - Lx5 LINE L1 -46 7004 6083 1 803 11315 198 79 86 chr4 28634939 28637739 -126992381 - L1_Mur2 LINE L1 -62 5815 3004 1 803 4624 91 6 3 chr4 28637739 28638371 -126991749 - L1_Mus1 LINE L1 0 6567 5934 1 803 11315 198 79 86 chr4 28638371 28638688 -126991432 - L1_Mur2 LINE L1 -2874 3003 2725 1 803 369 0 0 0 chr4 28638688 28638729 -126991391 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 803 11315 198 79 86 chr4 28638729 28639024 -126991096 - L1_Mur2 LINE L1 -3153 2724 2426 1 803 232 158 35 0 chr4 28639018 28639075 -126991045 - L1_Mur2 LINE L1 -4615 1262 1204 1 803 622 248 0 0 chr4 28640108 28640237 -126989883 + B1_Mus1 SINE Alu 1 129 -19 1 803 396 0 0 0 chr4 28640244 28640288 -126989832 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 1 803 411 205 0 7 chr4 28641709 28641862 -126988258 + CT-rich Low_complexity Low_complexity 1 151 0 1 803 24 53 0 0 chr4 28642565 28642603 -126987517 + AT_rich Low_complexity Low_complexity 1 38 0 1 803 360 0 0 0 chr4 28642923 28642963 -126987157 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 803 24 32 0 0 chr4 28643223 28643254 -126986866 + AT_rich Low_complexity Low_complexity 1 31 0 1 803 330 371 68 38 chr4 28643313 28643652 -126986468 - L1MC4a LINE L1 -1771 6111 5763 1 803 341 332 33 62 chr4 28644024 28644265 -126985855 - L1MC4a LINE L1 -2385 5497 5264 1 803 180 0 0 0 chr4 28644673 28644693 -126985427 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1 803 1572 277 28 26 chr4 28644714 28645144 -126984976 - Lx5 LINE L1 -43 7007 6577 1 803 2444 180 91 14 chr4 28645147 28645582 -126984538 + RLTR20B2 LTR ERVK 4 469 -91 1 803 414 0 0 0 chr4 28645582 28645628 -126984492 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 803 2444 180 91 14 chr4 28645628 28645709 -126984411 + RLTR20B2 LTR ERVK 470 560 0 1 803 2142 204 25 0 chr4 28645711 28646107 -126984013 - Lx5 LINE L1 -472 6578 6173 1 803 5067 80 0 3 chr4 28646607 28647293 -126982827 - L1_Mm LINE L1 -662 5221 4538 1 803 2104 254 48 9 chr4 28647290 28647826 -126982294 - Lx7 LINE L1 -391 7305 6749 1 803 232 286 16 0 chr4 28647824 28647887 -126982233 - Lx7 LINE L1 -1220 6476 6413 1 803 218 250 28 0 chr4 28648773 28648845 -126981275 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 803 254 89 44 0 chr4 28648846 28648891 -126981229 + (TATG)n Simple_repeat Simple_repeat 3 49 0 1 803 270 0 0 0 chr4 28649103 28649133 -126980987 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 803 257 332 71 61 chr4 28649473 28649685 -126980435 - Tigger13a DNA MER2_type -469 302 89 1 803 425 277 30 39 chr4 28649801 28649940 -126980180 - B1F SINE Alu -3 146 10 1 803 3309 85 5 0 chr4 28650358 28650794 -126979326 + L1_Mur1 LINE L1 5407 5844 -42 1 803 1038 86 7 0 chr4 28650794 28650934 -126979186 + B1_Mus1 SINE Alu 2 142 -6 1 803 831 150 18 6 chr4 28650937 28651105 -126979015 + GA-rich Low_complexity Low_complexity 3 172 0 1 803 6882 116 26 43 chr4 28651110 28652278 -126977842 + Lx3A LINE L1 5832 6980 -1 1 803 21 36 0 0 chr4 28652333 28652361 -126977759 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 284 70 0 23 chr4 28652587 28652631 -126977489 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1 803 360 290 67 22 chr4 28652840 28652974 -126977146 + LTR79 LTR ERVL 380 519 -8 1 803 374 0 22 0 chr4 28653311 28653357 -126976763 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 803 460 284 96 15 chr4 28655394 28655530 -126974590 + B1_Mur1 SINE Alu 3 149 0 1 803 442 327 19 33 chr4 28655602 28655817 -126974303 - B3 SINE B2 0 216 5 1 803 4555 124 9 6 chr4 28655913 28656613 -126973507 - Lx3A LINE L1 -479 6502 5801 1 803 4275 90 35 32 chr4 28656593 28656849 -126973271 + L1_Mur1 LINE L1 3817 4067 -1819 1 803 3200 68 9 2 chr4 28656849 28657274 -126972846 + L1_Mus2 LINE L1 6136 6563 -3 1 803 4275 90 35 32 chr4 28657274 28657727 -126972393 + L1_Mur1 LINE L1 4068 4528 -1358 1 803 469 246 0 44 chr4 28657794 28657930 -126972190 - Lx7 LINE L1 -2 7694 7565 1 803 388 287 28 0 chr4 28657929 28658037 -126972083 + Lx7 LINE L1 7556 7666 -30 1 803 371 236 95 88 chr4 28658121 28658395 -126971725 - Lx7 LINE L1 -127 7569 7294 1 803 3721 195 24 11 chr4 28659358 28660095 -126970025 - Lx2B LINE L1 -4 6996 6250 1 803 252 0 0 0 chr4 28660097 28660125 -126969995 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 803 198 0 0 0 chr4 28660724 28660746 -126969374 + (A)n Simple_repeat Simple_repeat 1 22 0 1 803 327 297 56 97 chr4 28661147 28661486 -126968634 - L1_Mur3 LINE L1 -2245 3635 3311 1 803 3565 252 42 37 chr4 28661511 28662566 -126967554 + RMER1A Other Other 4 1030 0 1 803 468 0 0 0 chr4 28662624 28662676 -126967444 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 803 1321 285 45 45 chr4 28662711 28663292 -126966828 - Lx9 LINE L1 -4 7640 7060 1 803 1099 187 50 59 chr4 28663367 28663533 -126966587 - Lx4B LINE L1 -4 7054 6896 1 803 612 0 0 0 chr4 28663533 28663601 -126966519 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 803 1099 187 50 59 chr4 28663601 28663673 -126966447 - Lx4B LINE L1 -163 6895 6818 1 803 630 159 127 0 chr4 28663679 28663805 -126966315 - Lx4B LINE L1 -372 6686 6545 1 803 4023 158 25 12 chr4 28663802 28664487 -126965633 + Lx4B LINE L1 5871 6564 -494 1 803 933 314 92 18 chr4 28664609 28665099 -126965021 - Lx7 LINE L1 -196 7500 6975 1 803 1439 303 77 12 chr4 28665114 28665317 -126964803 - Lx7 LINE L1 -1292 6404 6192 1 803 477 0 0 0 chr4 28665317 28665370 -126964750 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 803 1439 303 77 12 chr4 28665370 28665831 -126964289 - Lx7 LINE L1 -1505 6191 5698 1 803 2492 228 30 37 chr4 28665818 28666514 -126963606 - Lx7 LINE L1 -332 5548 4857 1 803 2385 133 24 26 chr4 28666514 28666930 -126963190 + Lx LINE L1 6234 6648 -6 1 803 1126 213 92 40 chr4 28667032 28667360 -126962760 - Lx9 LINE L1 -42 7602 7258 1 803 1193 219 5 83 chr4 28667382 28667489 -126962631 - Lx7 LINE L1 -1151 4729 4637 1 803 441 36 0 0 chr4 28667489 28667544 -126962576 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 803 1193 228 10 78 chr4 28667544 28667838 -126962282 - Lx7 LINE L1 -1483 4663 4385 1 803 21384 25 15 0 chr4 28667861 28671099 -126959021 - L1Md_A LINE L1 0 6582 3297 1 803 2089 64 4 0 chr4 28671096 28671362 -126958758 - L1Md_F LINE L1 -5680 839 573 1 803 1335 207 7 14 chr4 28671354 28671633 -126958487 - L1Md_F LINE L1 -6078 441 165 1 803 710 197 26 0 chr4 28671720 28671872 -126958248 - Lx7 LINE L1 -2951 2926 2771 1 803 5454 172 45 12 chr4 28671872 28672971 -126957149 + Lx5 LINE L1 4717 5866 -1184 1 803 312 27 0 0 chr4 28672971 28673008 -126957112 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 803 2375 173 52 45 chr4 28673008 28673269 -126956851 + Lx5 LINE L1 5867 6111 -939 1 803 622 291 22 9 chr4 28673331 28673560 -126956560 + L1MA4 LINE L1 4795 5026 -1117 2 803 326 302 50 0 chr4 28673611 28673790 -126956330 + L1MA4 LINE L1 5719 5906 -394 2 803 34987 67 2 13 chr4 28673798 28679090 -126951030 + L1Md_T LINE L1 356 5586 -297 2 803 8411 32 1 0 chr4 28679091 28680085 -126950035 + L1Md_T LINE L1 5588 6582 0 2 803 316 329 65 47 chr4 28681121 28681290 -126948830 - MER5A DNA MER1_type -10 179 8 2 803 450 0 0 0 chr4 28682569 28682619 -126947501 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 803 190 184 0 26 chr4 28683700 28683739 -126946381 - L2a LINE L2 -278 3148 3111 2 803 643 280 248 22 chr4 28683970 28684244 -126945876 - MTEb LTR MaLR -6 373 38 2 803 231 300 112 52 chr4 28684311 28684427 -126945693 - MLT1C LTR MaLR -8 459 337 2 803 6362 58 11 10 chr4 28684845 28685652 -126944468 - RLTR13C2 LTR ERVK 0 808 1 2 803 243 0 0 0 chr4 28685680 28685707 -126944413 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 803 1088 237 0 0 chr4 28686097 28686308 -126943812 + B3 SINE B2 1 211 -5 2 803 188 316 40 0 chr4 28686378 28686454 -126943666 + L4 LINE RTE 554 632 -1397 2 803 6322 141 69 3 chr4 28686943 28688040 -126942080 - Lx2 LINE L1 0 6997 5828 2 803 545 316 24 60 chr4 28688489 28688657 -126941463 - RSINE1 SINE B4 0 165 4 2 803 312 98 0 0 chr4 28691618 28691659 -126938461 - L1Md_F3 LINE L1 -358 6226 6186 2 803 625 81 27 9 chr4 28691659 28691771 -126938349 + L1Md_F3 LINE L1 6470 6583 -1 2 803 189 0 0 0 chr4 28691775 28691796 -126938324 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 803 399 21 0 0 chr4 28691833 28691881 -126938239 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 803 23 78 0 0 chr4 28691881 28691932 -126938188 + AT_rich Low_complexity Low_complexity 1 51 0 2 803 330 123 0 0 chr4 28692012 28692069 -126938051 - Lx3A LINE L1 -6 6975 6919 2 803 2315 112 100 42 chr4 28692825 28693274 -126936846 - IAPLTR2_Mm LTR ERVK 0 475 1 2 803 6921 31 5 11 chr4 28693276 28694108 -126936012 - IAPEz-int LTR ERVK -2 6479 5653 2 803 2691 64 0 3 chr4 28694103 28694446 -126935674 - IAPEz-int LTR ERVK -4781 1700 1359 2 803 3527 65 1 16 chr4 28694446 28695024 -126935096 - IAPEz-int LTR ERVK -5819 662 168 2 803 260 291 0 0 chr4 28695024 28695079 -126935041 - RLTR27 LTR ERVK -34 275 221 2 803 953 137 15 99 chr4 28695079 28695281 -126934839 - IAPEz-int LTR ERVK -6288 193 9 2 803 2331 109 95 69 chr4 28695282 28695745 -126934375 - IAPLTR2_Mm LTR ERVK 0 475 1 2 803 535 299 108 55 chr4 28696147 28696656 -126933464 + L1ME1 LINE L1 5433 5968 -211 2 803 1086 252 124 13 chr4 28696843 28697157 -126932963 - MTE2b LTR MaLR -13 366 18 2 803 450 0 0 0 chr4 28697338 28697388 -126932732 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 803 382 296 51 15 chr4 28697911 28698048 -126932072 - MIR3 SINE MIR -9 199 58 2 803 305 320 0 10 chr4 28698567 28698671 -126931449 + PB1D10 SINE Alu 5 107 -10 2 803 2004 301 73 77 chr4 28699164 28700163 -126929957 - Lx8 LINE L1 -252 7221 6227 2 803 235 49 49 0 chr4 28700182 28700223 -126929897 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2 803 387 0 0 0 chr4 28700963 28701006 -126929114 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 803 1400 208 4 34 chr4 28701022 28701286 -126928834 - MTC LTR MaLR -90 331 76 2 803 946 93 13 13 chr4 28701290 28701442 -126928678 + (TTCTC)n Simple_repeat Simple_repeat 4 155 0 2 803 3133 238 38 30 chr4 28701442 28702248 -126927872 - RMER1B Other Other -11 1055 176 2 803 360 200 12 12 chr4 28702293 28702374 -126927746 - MTC LTR MaLR -340 81 1 2 803 1931 287 52 55 chr4 28702444 28703705 -126926415 + L1_Mur3 LINE L1 918 2192 -3688 2 803 543 69 0 0 chr4 28703715 28703787 -126926333 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 2 803 30 0 0 0 chr4 28703794 28703824 -126926296 + AT_rich Low_complexity Low_complexity 1 30 0 2 803 997 150 109 12 chr4 28703827 28704084 -126926036 - Lx9 LINE L1 -7 7637 7356 2 803 768 249 23 6 chr4 28704083 28704257 -126925863 + Lx9 LINE L1 7177 7353 -291 2 803 2418 258 43 60 chr4 28704295 28704627 -126925493 + Lx6 LINE L1 6796 7108 -352 2 803 399 56 0 0 chr4 28704627 28704681 -126925439 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 100 2418 258 43 60 chr4 28704681 28705020 -126925100 + Lx6 LINE L1 7109 7456 -4 2 804 1213 274 19 89 chr4 28705041 28705758 -126924362 + L1_Mur3 LINE L1 2241 2907 -2973 2 804 1998 270 125 25 chr4 28705881 28706116 -126924004 + L1_Mur3 LINE L1 3388 3620 -2260 2 804 204 40 0 0 chr4 28706116 28706141 -126923979 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 804 1998 270 125 25 chr4 28706141 28706847 -126923273 + L1_Mur3 LINE L1 3621 4422 -1458 2 804 760 25 15 103 chr4 28706980 28707116 -126923004 - L1_Mus2 LINE L1 -1 6565 6442 2 804 4085 139 23 37 chr4 28707116 28707811 -126922309 - Lx LINE L1 -28 6626 5942 2 804 802 167 7 32 chr4 28707811 28707966 -126922154 + URR1B DNA MER1_type 75 225 0 2 804 363 60 0 0 chr4 28708105 28708155 -126921965 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 804 790 232 22 70 chr4 28709799 28709960 -126920160 + B3 SINE B2 1 165 -51 2 804 315 0 0 0 chr4 28709960 28709995 -126920125 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 804 790 232 22 70 chr4 28709995 28710060 -126920060 + B3 SINE B2 166 216 0 2 804 456 163 0 0 chr4 28711359 28711445 -126918675 + GA-rich Low_complexity Low_complexity 2 87 0 2 804 201 39 0 0 chr4 28712339 28712365 -126917755 + (G)n Simple_repeat Simple_repeat 1 26 0 2 804 204 163 0 0 chr4 28713411 28713454 -126916666 + A-rich Low_complexity Low_complexity 1 43 0 2 804 688 74 0 10 chr4 28714045 28714141 -126915979 + L1_Mus2 LINE L1 6080 6174 -392 2 804 397 278 78 9 chr4 28714184 28714300 -126915820 - B1F1 SINE Alu -21 128 5 2 804 499 301 59 5 chr4 28715354 28715558 -126914562 + ID_B1 SINE B4 1 215 -9 2 804 199 173 19 19 chr4 28717864 28717917 -126912203 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2 804 26 30 0 0 chr4 28717952 28717985 -126912135 + AT_rich Low_complexity Low_complexity 1 33 0 2 804 253 254 16 0 chr4 28718927 28718990 -126911130 - ID4_ SINE ID -18 65 2 2 804 1200 288 99 16 chr4 28719225 28719599 -126910521 - MTD LTR MaLR -14 405 1 2 804 180 143 0 0 chr4 28719716 28719758 -126910362 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 2 804 182 37 37 0 chr4 28720216 28720243 -126909877 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 804 1892 154 12 58 chr4 28720395 28720740 -126909380 + ORR1A4 LTR MaLR 1 329 0 2 804 4162 188 25 107 chr4 28720740 28721794 -126908326 + ORR1A4-int LTR MaLR 1 967 -996 2 804 1174 154 4 18 chr4 28722269 28722494 -126907626 - Lx LINE L1 0 6654 6433 2 804 1020 309 68 19 chr4 28722495 28722861 -126907259 + MTD LTR MaLR 36 419 0 2 804 481 307 50 55 chr4 28722861 28723044 -126907076 + B3A SINE B2 30 214 -2 2 804 518 304 55 42 chr4 28723211 28723448 -126906672 - MER2 DNA MER2_type -95 250 11 2 804 945 151 0 0 chr4 28723556 28723722 -126906398 + CT-rich Low_complexity Low_complexity 1 166 0 2 804 225 0 0 0 chr4 28723722 28723747 -126906373 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 804 543 309 51 60 chr4 28723787 28724021 -126906099 - B4A SINE B4 -55 237 6 2 804 1134 252 106 34 chr4 28724133 28724511 -126905609 + MTD LTR MaLR 15 419 0 2 804 1336 273 90 34 chr4 28724511 28725068 -126905052 + MTD-int LTR MaLR 1 588 -670 2 804 373 167 0 118 chr4 28725081 28725183 -126904937 - Lx8 LINE L1 -1016 6457 6368 2 804 338 319 7 7 chr4 28725875 28726011 -126904109 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 804 330 138 0 0 chr4 28726099 28726157 -126903963 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2 804 412 224 160 0 chr4 28726170 28726295 -126903825 - B1_Mus2 SINE Alu -2 145 1 2 804 220 98 78 0 chr4 28726506 28726557 -126903563 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 2 804 228 213 32 16 chr4 28726605 28726667 -126903453 + MurSatRep1 Unknown Unknown 196 258 -1879 2 804 387 263 43 68 chr4 28726958 28727121 -126902999 + ORR1D2 LTR MaLR 208 366 -4 2 804 234 0 0 0 chr4 28727209 28727235 -126902885 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 804 706 318 85 5 chr4 28727429 28727641 -126902479 + Lx5 LINE L1 6802 7030 -20 2 804 381 43 0 0 chr4 28727641 28727688 -126902432 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2 804 227 319 0 53 chr4 28728539 28728615 -126901505 + BC1_Mm scRNA scRNA 24 95 -57 2 804 264 265 47 47 chr4 28728746 28728853 -126901267 + L2 LINE L2 2050 2156 -1263 2 804 303 304 57 38 chr4 28730405 28730668 -126899452 + L1MD LINE L1 5254 5521 -721 2 804 982 274 157 28 chr4 28730763 28731127 -126898993 + MTD LTR MaLR 6 416 -3 2 804 225 272 12 24 chr4 28731128 28731211 -126898909 + L1MD LINE L1 5644 5725 -634 2 804 21 0 0 0 chr4 28732871 28732892 -126897228 + AT_rich Low_complexity Low_complexity 1 21 0 2 804 192 125 0 0 chr4 28733442 28733474 -126896646 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 804 342 169 0 0 chr4 28733534 28733599 -126896521 + GA-rich Low_complexity Low_complexity 2 66 0 2 804 2837 159 87 11 chr4 28734092 28734764 -126895356 + RMER6A LTR ERVK 1 751 -5 2 804 521 289 56 5 chr4 28734764 28734959 -126895161 + Ricksha_c DNA MuDR 1693 1897 -151 2 804 22 56 0 0 chr4 28736053 28736089 -126894031 + AT_rich Low_complexity Low_complexity 1 36 0 2 804 180 0 0 0 chr4 28738126 28738146 -126891974 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 804 210 171 0 0 chr4 28739730 28739771 -126890349 + A-rich Low_complexity Low_complexity 1 41 0 2 804 22 56 0 0 chr4 28740701 28740737 -126889383 + GC_rich Low_complexity Low_complexity 1 36 0 2 804 276 30 0 0 chr4 28741106 28741139 -126888981 + (CGG)n Simple_repeat Simple_repeat 3 35 0 2 804 474 18 0 0 chr4 28741901 28741956 -126888164 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 804 216 0 0 0 chr4 28742683 28742707 -126887413 + (CCCCG)n Simple_repeat Simple_repeat 5 28 0 2 804 321 109 0 0 chr4 28743935 28743990 -126886130 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 804 207 0 0 0 chr4 28746112 28746135 -126883985 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 804 39 22 0 0 chr4 28746241 28746287 -126883833 + AT_rich Low_complexity Low_complexity 1 46 0 2 804 204 167 24 0 chr4 28749528 28749570 -126880550 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 804 21 57 0 0 chr4 28750069 28750104 -126880016 + AT_rich Low_complexity Low_complexity 1 35 0 2 804 565 246 17 0 chr4 28750113 28750231 -126879889 + B1_Mur1 SINE Alu 1 120 -29 2 804 478 177 0 12 chr4 28750233 28750313 -126879807 + B1_Mur1 SINE Alu 70 148 -1 2 804 27 49 0 0 chr4 28751385 28751426 -126878694 + AT_rich Low_complexity Low_complexity 1 41 0 2 804 30 27 0 0 chr4 28752465 28752502 -126877618 + AT_rich Low_complexity Low_complexity 1 37 0 3 804 749 76 9 0 chr4 28753087 28753192 -126876928 + B1_Mus2 SINE Alu 42 147 0 3 804 248 49 49 0 chr4 28753194 28753235 -126876885 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 3 804 26 30 0 0 chr4 28753387 28753420 -126876700 + AT_rich Low_complexity Low_complexity 1 33 0 3 804 486 337 67 16 chr4 28753606 28753799 -126876321 + MIR SINE MIR 59 261 -1 3 804 381 43 0 0 chr4 28754819 28754866 -126875254 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 804 189 0 0 0 chr4 28755305 28755326 -126874794 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3 804 492 72 0 0 chr4 28756981 28757050 -126873070 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 804 448 320 51 23 chr4 28757051 28757227 -126872893 - B3A SINE B2 -16 182 2 3 804 22 35 0 0 chr4 28757237 28757266 -126872854 + AT_rich Low_complexity Low_complexity 1 29 0 3 804 216 97 0 0 chr4 28758206 28758237 -126871883 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 804 180 111 0 0 chr4 28758561 28758588 -126871532 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 804 418 272 24 53 chr4 28759851 28760002 -126870118 - B1F SINE Alu 0 149 2 3 804 275 371 57 0 chr4 28760383 28760488 -126869632 - PB1D10 SINE Alu -5 112 2 3 804 24 0 0 0 chr4 28760973 28760997 -126869123 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 1198 55 0 0 chr4 28764030 28764176 -126865944 + B1_Mus1 SINE Alu 1 146 -2 3 804 426 165 0 0 chr4 28765422 28765501 -126864619 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 804 511 198 0 76 chr4 28769025 28769156 -126860964 - RMER1B Other Other 0 1066 946 3 804 540 247 0 0 chr4 28769161 28769315 -126860805 + (TA)n Simple_repeat Simple_repeat 2 155 0 3 804 855 98 0 0 chr4 28769320 28769443 -126860677 + (TTCC)n Simple_repeat Simple_repeat 4 126 0 3 804 638 142 8 42 chr4 28769502 28769620 -126860500 - RMER1B Other Other -249 817 704 3 804 741 312 91 53 chr4 28769862 28770335 -126859785 - Lx9 LINE L1 -193 7451 6961 3 804 261 0 0 0 chr4 28770348 28770377 -126859743 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 804 335 276 0 38 chr4 28771084 28771163 -126858957 - RSINE1 SINE B4 -88 77 2 3 804 1063 231 7 21 chr4 28773561 28774001 -126856119 + Lx6 LINE L1 6805 7535 -161 3 804 252 59 0 0 chr4 28774426 28774460 -126855660 + (T)n Simple_repeat Simple_repeat 1 34 0 3 804 327 107 3 0 chr4 28775735 28775791 -126854329 + L1_Mm LINE L1 5200 5256 -630 3 804 21 71 0 0 chr4 28779467 28779509 -126850611 + AT_rich Low_complexity Low_complexity 1 42 0 3 804 661 292 55 42 chr4 28779711 28779947 -126850173 + B4 SINE B4 8 246 -46 3 804 858 198 28 0 chr4 28779950 28780127 -126849993 - Lx2B LINE L1 -279 6721 6540 3 804 766 122 30 0 chr4 28780891 28781022 -126849098 - URR1B DNA MER1_type 0 225 91 3 804 1242 272 65 44 chr4 28781766 28781903 -126848217 - Lx6 LINE L1 -26 7434 7306 3 804 576 0 0 0 chr4 28781903 28781967 -126848153 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 804 1242 272 65 44 chr4 28781967 28782309 -126847811 - Lx6 LINE L1 -155 7305 6945 3 804 888 125 78 7 chr4 28782354 28782507 -126847613 - B2_Mm2 SINE B2 -9 186 23 3 804 200 189 14 0 chr4 28783405 28783479 -126846641 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 3 804 180 328 71 39 chr4 28785790 28785917 -126844203 - L2c LINE L2 -21 3366 3236 3 804 432 82 0 0 chr4 28786317 28786378 -126843742 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 3 804 185 368 0 0 chr4 28787484 28787552 -126842568 + L2b LINE L2 3308 3375 0 3 804 603 0 0 0 chr4 28788099 28788166 -126841954 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 804 243 0 0 0 chr4 28788166 28788192 -126841928 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 804 488 291 62 8 chr4 28788197 28788325 -126841795 - RSINE1 SINE B4 -28 137 3 3 804 312 27 0 0 chr4 28788958 28788995 -126841125 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 804 423 0 0 0 chr4 28790713 28790760 -126839360 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 804 252 331 28 0 chr4 28792093 28792235 -126837885 - L1M4 LINE L1 -691 5483 5338 3 804 654 289 54 34 chr4 28792587 28792791 -126837329 - B4A SINE B4 -2 290 83 3 804 21 36 0 0 chr4 28792847 28792875 -126837245 + AT_rich Low_complexity Low_complexity 1 28 0 3 804 387 0 0 0 chr4 28793261 28793304 -126836816 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 804 293 340 20 59 chr4 28793355 28793558 -126836562 - Lx9 LINE L1 -220 7424 7230 3 804 341 344 0 0 chr4 28796598 28796691 -126833429 + B1_Mur2 SINE Alu 1 93 -56 3 804 333 0 0 0 chr4 28796707 28796744 -126833376 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 804 22 0 0 0 chr4 28796765 28796787 -126833333 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 21 0 0 0 chr4 28796855 28796876 -126833244 + AT_rich Low_complexity Low_complexity 1 21 0 3 804 252 0 0 0 chr4 28797495 28797523 -126832597 + (T)n Simple_repeat Simple_repeat 1 28 0 3 804 788 144 115 11 chr4 28797961 28798144 -126831976 + Lx2 LINE L1 6796 6997 0 3 804 1736 164 86 6 chr4 28799552 28799877 -126830243 - ORR1B2 LTR MaLR -8 359 9 3 804 614 396 56 43 chr4 28800645 28801088 -126829032 - LTR16A LTR ERVL -2 449 1 3 804 777 216 60 30 chr4 28801356 28801590 -126828530 - Lx7 LINE L1 -16 7680 7440 3 804 755 230 51 10 chr4 28801616 28801850 -126828270 - Lx7 LINE L1 -1248 6448 6192 3 804 252 0 0 0 chr4 28801875 28801903 -126828217 + (A)n Simple_repeat Simple_repeat 1 28 0 3 804 1224 40 0 0 chr4 28802133 28802281 -126827839 + B1_Mus1 SINE Alu 1 148 0 3 804 219 69 0 0 chr4 28802281 28802310 -126827810 + (A)n Simple_repeat Simple_repeat 1 29 0 3 804 321 369 67 93 chr4 28803247 28803591 -126826529 + MLT1A LTR MaLR 40 374 0 3 804 247 0 79 0 chr4 28804276 28804314 -126825806 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 804 192 200 0 0 chr4 28805812 28805852 -126824268 + (TATG)n Simple_repeat Simple_repeat 1 40 0 3 804 275 252 6 0 chr4 28806929 28807088 -126823032 + (CA)n Simple_repeat Simple_repeat 2 161 0 3 804 28 29 0 0 chr4 28807185 28807220 -126822900 + AT_rich Low_complexity Low_complexity 1 35 0 3 804 22 0 0 0 chr4 28810235 28810257 -126819863 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 24 67 0 0 chr4 28811852 28811897 -126818223 + AT_rich Low_complexity Low_complexity 1 45 0 3 804 270 116 0 0 chr4 28812831 28812874 -126817246 + (TTA)n Simple_repeat Simple_repeat 1 43 0 3 804 417 348 14 22 chr4 28812906 28813044 -126817076 - RSINE1 SINE B4 -23 142 6 3 804 521 333 59 24 chr4 28814436 28814691 -126815429 - B4 SINE B4 -5 287 24 3 804 1284 67 0 0 chr4 28815545 28815785 -126814335 + (TTCC)n Simple_repeat Simple_repeat 1 240 0 3 804 21 0 0 0 chr4 28816494 28816515 -126813605 + AT_rich Low_complexity Low_complexity 1 21 0 3 804 22 56 0 0 chr4 28818650 28818686 -126811434 + AT_rich Low_complexity Low_complexity 1 36 0 3 804 193 267 100 0 chr4 28818727 28818787 -126811333 - L4 LINE RTE -994 1035 970 3 804 641 224 35 29 chr4 28819104 28819274 -126810846 - MTD LTR MaLR -5 414 244 3 804 551 302 69 11 chr4 28820515 28820689 -126809431 + B3 SINE B2 9 192 -24 3 804 300 27 0 0 chr4 28820949 28820986 -126809134 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 804 1137 49 0 20 chr4 28820986 28821124 -126808996 - B1_Mus1 SINE Alu -9 139 2 3 804 25 0 0 0 chr4 28821435 28821460 -126808660 + AT_rich Low_complexity Low_complexity 1 25 0 3 804 254 29 0 28 chr4 28821922 28821958 -126808162 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 804 429 20 0 0 chr4 28823412 28823462 -126806658 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 804 23 0 0 0 chr4 28823578 28823601 -126806519 + AT_rich Low_complexity Low_complexity 1 23 0 3 804 198 0 0 0 chr4 28824240 28824262 -126805858 + (T)n Simple_repeat Simple_repeat 1 22 0 3 804 25 31 0 0 chr4 28824726 28824758 -126805362 + AT_rich Low_complexity Low_complexity 1 32 0 3 804 24 0 0 0 chr4 28825127 28825151 -126804969 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 367 266 21 21 chr4 28826710 28826806 -126803314 - ID_B1 SINE B4 -128 96 1 3 804 234 0 0 0 chr4 28826889 28826915 -126803205 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 804 548 287 75 45 chr4 28827004 28827270 -126802850 - B4 SINE B4 -16 276 3 3 804 1115 53 0 0 chr4 28827671 28827804 -126802316 + B1_Mus2 SINE Alu 5 137 -10 3 804 260 49 49 0 chr4 28827804 28827845 -126802275 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 804 21 57 0 0 chr4 28830112 28830147 -126799973 + AT_rich Low_complexity Low_complexity 1 35 0 3 804 1069 291 50 32 chr4 28830288 28830996 -126799124 - L1_Mur3 LINE L1 -3922 1925 1205 3 804 22 0 0 0 chr4 28832187 28832209 -126797911 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 26 50 0 0 chr4 28835198 28835238 -126794882 + AT_rich Low_complexity Low_complexity 1 40 0 3 100 1017 294 68 27 chr4 28835619 28836028 -126794092 - Lx8 LINE L1 -840 6633 6208 3 805 966 42 0 0 chr4 28836034 28836153 -126793967 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 3 805 932 168 121 10 chr4 28838474 28838673 -126791447 + URR1A DNA MER1_type 5 225 -1 3 805 332 169 34 0 chr4 28838945 28839034 -126791086 - Lx9 LINE L1 -6 7638 7547 3 805 225 183 73 0 chr4 28839043 28839125 -126790995 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 805 766 178 7 20 chr4 28840205 28840354 -126789766 + B1_Mur3 SINE Alu 1 147 -2 3 805 315 0 0 0 chr4 28841257 28841292 -126788828 + (T)n Simple_repeat Simple_repeat 1 35 0 3 805 410 0 20 0 chr4 28842017 28842067 -126788053 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 805 492 306 30 20 chr4 28842222 28842425 -126787695 - Lx9 LINE L1 -272 7372 7168 4 805 22 0 0 0 chr4 28844082 28844104 -126786016 + GC_rich Low_complexity Low_complexity 1 22 0 4 805 190 116 47 0 chr4 28844247 28844290 -126785830 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 805 279 0 0 0 chr4 28844290 28844321 -126785799 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 805 204 137 39 19 chr4 28844704 28844715 -126785405 + (TAAA)n Simple_repeat Simple_repeat 2 12 0 4 805 1100 79 0 0 chr4 28844715 28844854 -126785266 + B1_Mus2 SINE Alu 1 139 -8 4 805 204 137 39 19 chr4 28844854 28844894 -126785226 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 4 805 248 16 115 0 chr4 28845245 28845306 -126784814 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 4 805 33 25 0 0 chr4 28845609 28845649 -126784471 + AT_rich Low_complexity Low_complexity 1 40 0 4 805 26 0 0 0 chr4 28845870 28845896 -126784224 + AT_rich Low_complexity Low_complexity 1 26 0 4 805 2227 27 0 0 chr4 28845896 28846156 -126783964 + L1Md_A LINE L1 6321 6580 -2 4 805 220 136 23 0 chr4 28846262 28846306 -126783814 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 805 27 49 0 0 chr4 28847607 28847648 -126782472 + AT_rich Low_complexity Low_complexity 1 41 0 4 805 350 362 53 20 chr4 28848552 28848704 -126781416 + RSINE1 SINE B4 9 165 0 4 805 646 156 7 7 chr4 28849632 28849768 -126780352 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 805 216 247 24 24 chr4 28849784 28849867 -126780253 + (CATA)n Simple_repeat Simple_repeat 2 84 0 4 805 1717 120 20 27 chr4 28851168 28851460 -126778660 - L1_Mus4 LINE L1 -1 6635 6346 4 805 296 325 190 32 chr4 28851783 28852031 -126778089 - B4A SINE B4 -1 291 5 4 805 324 0 0 0 chr4 28852643 28852679 -126777441 + (A)n Simple_repeat Simple_repeat 1 36 0 4 805 23 33 0 0 chr4 28854087 28854117 -126776003 + AT_rich Low_complexity Low_complexity 1 30 0 4 805 533 313 0 0 chr4 28854829 28854960 -126775160 + ID_B1 SINE B4 87 217 -7 4 805 24 0 0 0 chr4 28856085 28856109 -126774011 + AT_rich Low_complexity Low_complexity 1 24 0 4 805 267 296 20 39 chr4 28856145 28856247 -126773873 - MTEa LTR MaLR -7 372 273 4 805 1188 111 0 0 chr4 28856381 28856561 -126773559 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 805 695 12 12 0 chr4 28856561 28856645 -126773475 + (GGGAA)n Simple_repeat Simple_repeat 1 85 0 4 805 511 71 24 0 chr4 28857011 28857095 -126773025 + L1Md_F3 LINE L1 6498 6583 -1 4 805 530 63 13 0 chr4 28859085 28859164 -126770956 + (CCTG)n Simple_repeat Simple_repeat 2 81 0 4 805 200 139 28 0 chr4 28859165 28859201 -126770919 + T-rich Low_complexity Low_complexity 5 41 0 4 805 201 271 34 0 chr4 28859519 28859578 -126770542 + (CATG)n Simple_repeat Simple_repeat 4 64 0 4 805 22 0 0 0 chr4 28863207 28863229 -126766891 + AT_rich Low_complexity Low_complexity 1 22 0 4 805 1063 82 0 0 chr4 28864655 28864790 -126765330 + B1_Mus1 SINE Alu 2 136 -12 4 805 361 0 41 0 chr4 28864791 28864840 -126765280 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 805 330 115 0 0 chr4 28865060 28865112 -126765008 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 805 33 56 0 0 chr4 28866998 28867052 -126763068 + AT_rich Low_complexity Low_complexity 1 54 0 4 805 28 48 0 0 chr4 28867647 28867689 -126762431 + AT_rich Low_complexity Low_complexity 1 42 0 4 805 485 335 46 25 chr4 28867855 28868051 -126762069 - Charlie1 DNA MER1_type -2581 200 1 4 805 394 49 33 0 chr4 28869222 28869283 -126760837 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 4 805 195 42 0 0 chr4 28872506 28872530 -126757590 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 805 205 226 0 36 chr4 28873163 28873218 -126756902 + GA-rich Low_complexity Low_complexity 3 55 0 4 805 311 245 43 0 chr4 28873266 28873360 -126756760 + CT-rich Low_complexity Low_complexity 3 100 0 4 805 463 129 11 11 chr4 28878841 28878935 -126751185 - Lx LINE L1 0 6654 6561 4 805 563 78 10 3 chr4 28878909 28879013 -126751107 - Lx LINE L1 -126 6510 6424 4 805 201 39 0 0 chr4 28879714 28879740 -126750380 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 805 21 57 0 0 chr4 28879976 28880011 -126750109 + AT_rich Low_complexity Low_complexity 1 35 0 4 805 22 56 0 0 chr4 28880894 28880930 -126749190 + AT_rich Low_complexity Low_complexity 1 36 0 4 805 389 338 20 47 chr4 28881154 28881303 -126748817 + B3A SINE B2 35 179 -19 4 805 942 58 0 0 chr4 28881311 28881432 -126748688 + (AATAG)n Simple_repeat Simple_repeat 4 124 0 4 805 917 34 8 0 chr4 28881432 28881549 -126748571 + (GA)n Simple_repeat Simple_repeat 2 119 0 4 805 7215 99 3 14 chr4 28881615 28883293 -126746827 - L1_Mus2 LINE L1 0 6566 4907 4 805 3051 133 4 24 chr4 28883291 28883798 -126746322 + L1_Mus2 LINE L1 4458 4954 -929 4 805 21 0 0 0 chr4 28883834 28883855 -126746265 + AT_rich Low_complexity Low_complexity 1 21 0 4 805 23 0 0 0 chr4 28885090 28885113 -126745007 + AT_rich Low_complexity Low_complexity 1 23 0 4 805 624 244 44 19 chr4 28885548 28885707 -126744413 + B3 SINE B2 53 215 -1 4 805 2022 240 98 12 chr4 28886675 28886747 -126743373 - Lx9 LINE L1 0 7644 7577 4 805 222 118 0 0 chr4 28886747 28886781 -126743339 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 805 2022 240 98 12 chr4 28886781 28887302 -126742818 - Lx9 LINE L1 -68 7576 7000 4 805 295 157 28 28 chr4 28887319 28887391 -126742729 + Lx9 LINE L1 6889 6960 -684 4 805 369 0 0 0 chr4 28892379 28892420 -126737700 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 805 255 31 0 0 chr4 28892739 28892771 -126737349 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 4 805 21 36 0 0 chr4 28893443 28893471 -126736649 + AT_rich Low_complexity Low_complexity 1 28 0 4 805 23 0 0 0 chr4 28895539 28895562 -126734558 + AT_rich Low_complexity Low_complexity 1 23 0 4 805 21 0 0 0 chr4 28895999 28896020 -126734100 + AT_rich Low_complexity Low_complexity 1 21 0 4 805 279 248 19 3 chr4 28897126 28897201 -126732919 - B1F SINE Alu 0 120 41 4 805 357 320 65 8 chr4 28898205 28898328 -126731792 + RSINE1 SINE B4 3 132 -33 4 805 276 186 0 0 chr4 28898381 28898440 -126731680 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 805 536 321 6 36 chr4 28898445 28898613 -126731507 - RSINE1 SINE B4 0 165 3 4 805 199 132 58 14 chr4 28900016 28900085 -126730035 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 805 528 16 0 0 chr4 28900504 28900565 -126729555 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 805 498 159 0 0 chr4 28900912 28901000 -126729120 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 805 396 0 0 0 chr4 28901274 28901318 -126728802 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 805 1168 48 0 14 chr4 28901446 28901594 -126728526 - B1_Mm SINE Alu 0 147 2 4 805 650 13 13 0 chr4 28902541 28902620 -126727500 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 4 805 229 287 20 69 chr4 28903802 28903903 -126726217 - RMER12 LTR ERVK -477 845 750 4 805 379 228 20 13 chr4 28904962 28905113 -126725007 + (CATATA)n Simple_repeat Simple_repeat 6 157 0 4 805 236 152 51 0 chr4 28905225 28905284 -126724836 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 4 805 215 247 0 66 chr4 28905304 28905395 -126724725 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 4 805 28 0 0 0 chr4 28905545 28905573 -126724547 + AT_rich Low_complexity Low_complexity 1 28 0 4 805 405 0 0 0 chr4 28905744 28905789 -126724331 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 805 7708 65 7 13 chr4 28906770 28908077 -126722043 - L1Md_F2 LINE L1 -1 6581 5277 4 805 2506 290 74 53 chr4 28908396 28909511 -126720609 - Lx8 LINE L1 -235 7238 6100 4 805 1996 130 3 10 chr4 28909678 28909988 -126720132 - RLTR10E LTR ERVK -3 308 1 4 805 746 305 50 33 chr4 28910124 28910604 -126719516 - Lx9 LINE L1 -765 6879 6356 4 805 513 0 0 0 chr4 28910609 28910666 -126719454 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 805 189 0 0 0 chr4 28910666 28910686 -126719434 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 805 2134 89 95 3 chr4 28911375 28911692 -126718428 - ORR1A1 LTR MaLR 0 346 1 4 805 190 352 62 62 chr4 28911825 28911955 -126718165 - MER5B DNA MER1_type -48 130 1 4 805 202 150 25 0 chr4 28912853 28912893 -126717227 + (TAA)n Simple_repeat Simple_repeat 1 41 0 4 805 252 258 30 0 chr4 28913640 28913706 -126716414 - L4 LINE RTE -1816 213 146 4 805 249 349 54 45 chr4 28914023 28914134 -126715986 - MIR SINE MIR -71 191 80 4 805 2886 178 17 24 chr4 28914458 28915044 -126715076 + RMER6A LTR ERVK 1 582 -174 4 805 1675 174 7 13 chr4 28915044 28915353 -126714767 - Lx2B LINE L1 -270 6730 6424 4 805 761 244 166 0 chr4 28915343 28915572 -126714548 + Lx2B LINE L1 6733 6999 -1 4 805 1037 164 22 17 chr4 28915593 28915773 -126714347 + RMER6A LTR ERVK 576 756 0 4 805 278 106 21 0 chr4 28915831 28915878 -126714242 + (CCCCCT)n Simple_repeat Simple_repeat 6 53 0 4 805 326 202 62 12 chr4 28915879 28915959 -126714161 + ID_B1 SINE B4 139 222 -2 4 805 21 57 0 0 chr4 28916039 28916074 -126714046 + AT_rich Low_complexity Low_complexity 1 35 0 4 805 362 296 18 9 chr4 28916108 28916217 -126713903 + RSINE1 SINE B4 4 113 -52 4 805 1617 191 10 3 chr4 28916667 28916976 -126713144 - L1_Mur2 LINE L1 -444 5433 5123 4 805 4189 236 41 45 chr4 28916941 28918079 -126712041 + RMER1A Other Other 45 1028 -2 4 805 270 0 0 0 chr4 28919515 28919545 -126710575 + (CAGAG)n Simple_repeat Simple_repeat 4 33 0 4 805 21 36 0 0 chr4 28919699 28919727 -126710393 + AT_rich Low_complexity Low_complexity 1 28 0 4 805 225 200 0 22 chr4 28919962 28920008 -126710112 + T-rich Low_complexity Low_complexity 5 49 0 4 805 594 332 69 48 chr4 28920197 28920529 -126709591 + MTE2b LTR MaLR 41 379 0 4 805 287 275 93 91 chr4 28920745 28921027 -126709093 - ORR1E LTR MaLR 0 379 94 4 805 33 25 0 0 chr4 28921379 28921419 -126708701 + AT_rich Low_complexity Low_complexity 1 40 0 4 805 215 306 247 35 chr4 28922162 28922527 -126707593 - L2 LINE L2 -968 2451 2000 5 805 1317 83 0 0 chr4 28922527 28922867 -126707253 + (TGG)n Simple_repeat Simple_repeat 1 340 0 5 805 215 306 247 35 chr4 28922867 28922925 -126707195 - L2 LINE L2 -1420 1999 1929 5 805 1041 46 0 0 chr4 28922925 28923056 -126707064 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 5 805 215 306 247 35 chr4 28923056 28923085 -126707035 - L2 LINE L2 -1491 1928 1899 5 805 447 95 0 0 chr4 28923509 28923583 -126706537 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 805 247 340 11 11 chr4 28924214 28924309 -126705811 - MLT1C LTR MaLR -29 438 344 5 805 280 338 51 61 chr4 28925627 28925841 -126704279 - LTR16B LTR ERVL -8 455 244 5 805 468 0 0 0 chr4 28925879 28925931 -126704189 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 805 230 159 0 0 chr4 28926726 28926770 -126703350 + A-rich Low_complexity Low_complexity 1 44 0 5 805 201 268 0 35 chr4 28927080 28927138 -126702982 + GA-rich Low_complexity Low_complexity 3 58 0 5 805 450 0 0 0 chr4 28928022 28928072 -126702048 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 805 574 266 268 35 chr4 28929153 28929582 -126700538 + MT2A LTR ERVL 1 529 -4 5 805 315 0 0 0 chr4 28929712 28929747 -126700373 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 5 805 499 81 149 11 chr4 28929747 28929834 -126700286 - BC1_Mm scRNA scRNA -53 99 1 5 805 2180 201 8 5 chr4 28930237 28930636 -126699484 + MTC LTR MaLR 1 400 -21 5 805 237 308 178 11 chr4 28930886 28931060 -126699060 - MLT1H-int LTR MaLR -35 1374 1172 5 805 279 303 60 60 chr4 28931474 28931625 -126698495 - MLT1H-int LTR MaLR -812 597 447 5 805 328 20 20 20 chr4 28931691 28931741 -126698379 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 5 805 237 346 14 50 chr4 28931788 28931928 -126698192 - MLT1H-int LTR MaLR -1176 313 179 5 805 288 0 0 0 chr4 28932917 28932949 -126697171 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5 805 994 201 51 15 chr4 28932949 28933136 -126696984 - B3 SINE B2 -20 196 2 5 805 300 232 0 42 chr4 28933783 28933855 -126696265 + B1_Mus1 SINE Alu 2 70 -78 5 805 327 244 188 53 chr4 28933857 28934065 -126696055 - L1MEc LINE L1 -4913 1487 1252 5 805 348 364 72 14 chr4 28934502 28934711 -126695409 - L1MEc LINE L1 -6008 392 172 5 805 285 29 0 0 chr4 28934712 28934746 -126695374 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 805 330 252 0 0 chr4 28934754 28934853 -126695267 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 805 202 343 8 21 chr4 28936244 28936359 -126693761 - L2c LINE L2 0 3426 3311 5 805 180 191 123 68 chr4 28936400 28936473 -126693647 + L3 LINE CR1 4082 4158 -331 5 805 481 186 31 8 chr4 28936850 28936980 -126693140 + Lx9 LINE L1 7512 7644 0 5 805 27 29 0 0 chr4 28937024 28937058 -126693062 + AT_rich Low_complexity Low_complexity 1 34 0 5 805 718 112 0 0 chr4 28937098 28937214 -126692906 - Lx2A1 LINE L1 -3 7005 6890 5 805 406 318 49 37 chr4 28937291 28937454 -126692666 - RMER15 LTR ERVL -59 516 352 5 805 21 0 0 0 chr4 28937796 28937817 -126692303 + AT_rich Low_complexity Low_complexity 1 21 0 5 805 913 321 33 21 chr4 28937928 28938259 -126691861 + MTE2b LTR MaLR 1 335 -44 5 805 1245 267 30 40 chr4 28938286 28938657 -126691463 + MTEb-int LTR MaLR 111 477 -1103 5 805 3543 266 53 59 chr4 28938774 28939933 -126690187 + Lx9 LINE L1 6311 7462 -182 5 805 2839 23 2 177 chr4 28939940 28940410 -126689710 - RLTR10 LTR ERVK -2 388 1 5 805 17105 27 1 1 chr4 28940412 28942392 -126687728 - RLTR10-int LTR ERVK -3 1984 3 5 805 2861 18 2 177 chr4 28942396 28942866 -126687254 - RLTR10 LTR ERVK -2 388 1 5 805 254 286 65 7 chr4 28942879 28943034 -126687086 + Lx9 LINE L1 7481 7644 0 5 805 254 305 18 37 chr4 28943052 28943161 -126686959 + MTEb-int LTR MaLR 461 567 -1013 5 805 246 167 16 48 chr4 28943152 28943215 -126686905 + MTEb-int LTR MaLR 1190 1250 -8 5 805 925 344 33 14 chr4 28943230 28943590 -126686530 + MTEb LTR MaLR 11 377 -2 5 805 22 0 0 0 chr4 28943783 28943805 -126686315 + AT_rich Low_complexity Low_complexity 1 22 0 5 805 868 297 118 60 chr4 28943963 28944464 -126685656 - MT2A LTR ERVL -1 532 3 5 805 22 80 0 0 chr4 28944984 28945034 -126685086 + AT_rich Low_complexity Low_complexity 1 50 0 5 805 24 0 0 0 chr4 28945864 28945888 -126684232 + AT_rich Low_complexity Low_complexity 1 24 0 5 805 507 327 28 14 chr4 28946183 28946394 -126683726 + B3 SINE B2 1 214 -2 5 805 698 246 20 66 chr4 28946413 28946609 -126683511 - ORR1D1 LTR MaLR -187 187 1 5 805 591 290 46 66 chr4 28946610 28946764 -126683356 - B3 SINE B2 -14 202 52 5 805 2880 179 136 28 chr4 28946764 28947094 -126683026 - RMER6D LTR ERVK -1 719 368 5 805 504 0 0 0 chr4 28947094 28947150 -126682970 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 805 2880 179 136 28 chr4 28947150 28947468 -126682652 - RMER6D LTR ERVK -353 367 2 5 805 591 290 46 66 chr4 28947468 28947509 -126682611 - B3 SINE B2 -165 51 11 5 805 6852 90 24 8 chr4 28948589 28950003 -126680117 - L1_Mus2 LINE L1 -1 6565 5120 5 805 2992 57 15 25 chr4 28950003 28950402 -126679718 + MTA_Mm LTR MaLR 1 395 -1 5 805 4851 123 35 10 chr4 28950402 28950462 -126679658 - L1_Mus2 LINE L1 -764 5119 5060 5 805 9513 126 11 8 chr4 28950459 28952523 -126677597 - L1_Mus2 LINE L1 -3092 2791 721 5 805 400 285 136 18 chr4 28952564 28952836 -126677284 - L1_Mus2 LINE L1 -5801 815 512 5 805 364 19 19 19 chr4 28952908 28952962 -126677158 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 805 4539 175 29 17 chr4 28953017 28954213 -126675907 + Lx5 LINE L1 4877 6100 -950 5 805 2829 15 0 47 chr4 28954213 28954556 -126675564 - IAPLTR2b LTR ERVK 0 327 1 5 805 6011 66 12 11 chr4 28954556 28955386 -126674734 - IAPEz-int LTR ERVK 0 6481 5651 5 805 2583 61 0 3 chr4 28955379 28955722 -126674398 - IAPEz-int LTR ERVK -4781 1700 1359 5 805 3234 74 0 26 chr4 28955722 28956307 -126673813 - IAPEz-int LTR ERVK -5819 662 168 5 805 226 321 0 0 chr4 28956307 28956360 -126673760 - RLTR27 LTR ERVK -34 275 223 5 805 925 100 35 96 chr4 28956360 28956559 -126673561 - IAPEz-int LTR ERVK -6286 195 9 5 805 2803 25 0 24 chr4 28956560 28956895 -126673225 - IAPLTR2b LTR ERVK 0 327 1 5 805 3422 200 27 52 chr4 28956895 28957762 -126672358 + Lx5 LINE L1 6106 7033 -17 5 805 28 29 0 0 chr4 28957776 28957811 -126672309 + AT_rich Low_complexity Low_complexity 1 35 0 5 805 203 235 24 24 chr4 28958242 28958325 -126671795 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 5 805 1055 127 6 0 chr4 28958374 28958547 -126671573 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 5 805 234 307 0 0 chr4 28958721 28958796 -126671324 - L1_Mur3 LINE L1 -790 5090 5016 5 805 426 217 62 20 chr4 28958878 28959024 -126671096 - L1_Mur3 LINE L1 -3821 2059 1908 5 805 291 309 8 115 chr4 28959068 28959328 -126670792 - L1_Mur3 LINE L1 -6563 1165 934 5 805 303 319 82 42 chr4 28959516 28960091 -126670029 + L1_Mur3 LINE L1 3169 3766 -2114 5 805 505 326 111 0 chr4 28960175 28960365 -126669755 + MT2A LTR ERVL 249 459 -74 5 805 587 285 38 26 chr4 28960412 28960837 -126669283 - L1_Mur3 LINE L1 -3464 2383 1949 5 805 4568 162 57 41 chr4 28960863 28962850 -126667270 + L1VL2 LINE L1 9 1677 -1938 5 805 1095 88 0 13 chr4 28962850 28962999 -126667121 + B1_Mus1 SINE Alu 2 148 0 5 805 13770 150 17 10 chr4 28962999 28966133 -126663987 + Lx LINE L1 3133 6289 -365 5 805 199 375 80 0 chr4 28966149 28966261 -126663859 - MIR SINE MIR -60 148 28 5 806 423 0 0 0 chr4 28968690 28968737 -126661383 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 806 327 25 0 0 chr4 28969276 28969316 -126660804 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 806 291 238 176 10 chr4 28969455 28969557 -126660563 + Lx4B LINE L1 6940 7058 0 5 806 305 24 24 0 chr4 28969560 28969602 -126660518 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 806 21 36 0 0 chr4 28969617 28969645 -126660475 + AT_rich Low_complexity Low_complexity 1 28 0 5 806 516 128 27 9 chr4 28970538 28970648 -126659472 + CT-rich Low_complexity Low_complexity 4 115 0 5 806 1035 131 0 0 chr4 28970920 28971088 -126659032 - L1_Mur3 LINE L1 -811 5069 4902 5 806 2081 204 12 8 chr4 28971143 28971641 -126658479 - L1_Mur3 LINE L1 -650 5230 4731 5 806 1141 122 61 0 chr4 28971670 28971850 -126658270 + B2_Mm2 SINE B2 2 192 -3 5 806 6443 241 41 14 chr4 28971879 28974017 -126656103 + Lx6 LINE L1 5256 7458 -2 5 806 888 10 0 0 chr4 28975488 28975589 -126654531 + (TTC)n Simple_repeat Simple_repeat 2 102 0 5 806 2341 81 27 9 chr4 28975657 28975994 -126654126 - L1Md_F2 LINE L1 0 6582 6240 5 806 180 0 0 0 chr4 28976202 28976222 -126653898 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 806 222 37 0 0 chr4 28976398 28976425 -126653695 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 806 36198 42 0 3 chr4 28976602 28982836 -126647284 - L1Md_T LINE L1 -1 6584 271 5 806 786 299 30 48 chr4 28983008 28983401 -126646719 + Lx6 LINE L1 7045 7430 -30 5 806 477 352 73 18 chr4 28983530 28983802 -126646318 + LTR52 LTR ERVL 130 416 -5 5 806 192 40 0 0 chr4 28984089 28984114 -126646006 + (TCTCTG)n Simple_repeat Simple_repeat 4 28 0 5 806 306 125 0 0 chr4 28984116 28984164 -126645956 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 5 806 277 41 0 75 chr4 28984277 28984330 -126645790 + (TCTCCC)n Simple_repeat Simple_repeat 5 53 0 5 806 621 192 0 0 chr4 28984436 28984561 -126645559 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 806 2183 129 0 12 chr4 28984561 28984883 -126645237 - ORR1A2 LTR MaLR -8 319 2 5 806 586 62 21 0 chr4 28984895 28984991 -126645129 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 806 1835 262 20 55 chr4 28984998 28985639 -126644481 - Lx9 LINE L1 -215 7429 6811 5 806 483 18 0 0 chr4 28985883 28985939 -126644181 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 806 485 292 135 8 chr4 28986088 28986333 -126643787 + B4A SINE B4 3 278 -14 5 806 525 32 0 0 chr4 28986399 28986462 -126643658 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 806 225 0 0 0 chr4 28986462 28986486 -126643634 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 806 24 0 0 0 chr4 28987497 28987521 -126642599 + AT_rich Low_complexity Low_complexity 1 24 0 5 806 407 127 0 12 chr4 28987814 28987894 -126642226 - Lx2 LINE L1 0 6997 6919 5 806 626 293 117 37 chr4 28987903 28988254 -126641866 - MLT1B LTR MaLR -8 382 4 5 806 244 342 34 26 chr4 28989323 28989440 -126640680 + MLT1I LTR MaLR 36 153 -258 5 806 240 59 0 0 chr4 28990641 28990675 -126639445 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 5 806 344 316 0 0 chr4 28990695 28990790 -126639330 - B1_Mur2 SINE Alu -37 112 18 5 806 234 284 0 15 chr4 28990860 28990928 -126639192 + MER5C1 DNA MER1_type 191 257 -6 5 806 1175 270 14 17 chr4 28991135 28991199 -126638921 - B4 SINE B4 -2 290 224 5 806 236 30 30 0 chr4 28991199 28991232 -126638888 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 806 1175 270 14 17 chr4 28991232 28991457 -126638663 - B4 SINE B4 -69 223 2 5 806 3402 33 2 0 chr4 28991671 28992066 -126638054 + MTA_Mm LTR MaLR 1 396 0 5 806 195 42 0 0 chr4 28992748 28992772 -126637348 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 806 4903 186 46 72 chr4 28992772 28992930 -126637190 - RLTR25A LTR ERVK -2 1101 968 5 806 828 70 15 8 chr4 28992930 28993060 -126637060 + (TCC)n Simple_repeat Simple_repeat 2 132 0 5 806 4903 186 46 72 chr4 28993060 28994031 -126636089 - RLTR25A LTR ERVK -136 967 1 5 806 468 0 0 0 chr4 28994198 28994250 -126635870 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 806 548 205 25 8 chr4 28995141 28995259 -126634861 - MER5A1 DNA MER1_type -1 165 46 6 806 216 97 0 0 chr4 28996456 28996487 -126633633 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 6 806 300 336 8 112 chr4 28997352 28997373 -126632747 + B4 SINE B4 75 81 -211 6 806 593 273 0 0 chr4 28997373 28997494 -126632626 + B1_Mur2 SINE Alu 2 122 -27 6 806 183 100 0 0 chr4 28997751 28997781 -126632339 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 806 1814 196 21 84 chr4 28998254 28998672 -126631448 + ORR1B1 LTR MaLR 1 392 -2 6 806 4895 51 0 0 chr4 28999367 29000000 -126630120 - L1Md_F2 LINE L1 0 6582 5950 6 806 4773 45 2 0 chr4 29000000 29000668 -126629452 - L1Md_F2 LINE L1 -633 5949 5281 1 806 633 249 125 11 chr4 29000699 29000971 -126629149 + Lx9 LINE L1 7315 7617 -27 2 806 23 0 0 0 chr4 29002033 29002056 -126628064 + AT_rich Low_complexity Low_complexity 1 23 0 3 806 299 342 53 18 chr4 29002945 29003058 -126627062 - B1F1 SINE Alu -32 117 1 4 806 192 318 148 0 chr4 29003121 29003209 -126626911 + MIRb SINE MIR 134 234 -34 5 806 219 334 117 21 chr4 29003322 29003569 -126626551 - L2a LINE L2 -9 3417 3104 6 806 803 124 0 8 chr4 29005562 29005684 -126624436 + B1_Mus1 SINE Alu 2 122 -26 7 806 303 93 0 0 chr4 29006999 29007042 -126623078 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 8 806 41 48 0 0 chr4 29008645 29008707 -126621413 + AT_rich Low_complexity Low_complexity 1 62 0 9 806 285 191 0 0 chr4 29010030 29010098 -126620022 - L1MA7 LINE L1 0 6291 6224 1 806 1386 51 0 0 chr4 29010600 29010775 -126619345 + (GA)n Simple_repeat Simple_repeat 1 175 0 1 806 215 79 26 0 chr4 29011732 29011770 -126618350 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 806 470 210 0 8 chr4 29012461 29012476 -126617644 + (CA)n Simple_repeat Simple_repeat 2 16 0 1 806 306 0 0 0 chr4 29012476 29012510 -126617610 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 806 470 210 0 8 chr4 29012510 29012619 -126617501 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 806 952 314 58 6 chr4 29013482 29013978 -126616142 + L1MA6 LINE L1 5514 6035 -265 1 806 231 36 0 0 chr4 29013984 29014012 -126616108 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 806 516 214 125 16 chr4 29014013 29014141 -126615979 - B1_Mur3 SINE Alu -2 147 6 1 806 498 380 49 38 chr4 29014890 29015177 -126614943 - B4A SINE B4 0 292 3 1 806 280 97 0 31 chr4 29015320 29015384 -126614736 + (CAAAAA)n Simple_repeat Simple_repeat 1 62 0 2 806 201 139 47 0 chr4 29016083 29016126 -126613994 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 2 806 566 297 51 14 chr4 29016313 29016528 -126613592 - L1MC1 LINE L1 -245 6088 5866 2 806 1886 218 16 13 chr4 29016589 29016971 -126613149 - MTC LTR MaLR -21 400 18 2 806 1601 217 48 21 chr4 29016996 29017380 -126612740 + MTD LTR MaLR 18 404 -15 2 806 226 358 21 0 chr4 29017526 29017621 -126612499 - MER45A DNA Tip100 -14 164 68 2 806 2571 249 89 7 chr4 29021259 29021352 -126608768 - RMER1B Other Other -4 1062 944 2 806 414 0 0 0 chr4 29021352 29021398 -126608722 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 806 3243 179 24 4 chr4 29021398 29021988 -126608132 - RMER1A Other Other -123 943 280 2 806 1128 308 24 24 chr4 29022001 29022413 -126607707 - RMER1A Other Other -586 480 100 2 806 2195 129 0 0 chr4 29022413 29022738 -126607382 + ORR1A2 LTR MaLR 3 327 0 2 806 1100 311 16 79 chr4 29022738 29022834 -126607286 - RMER1B Other Other -967 99 4 2 806 1419 42 0 0 chr4 29023018 29023231 -126606889 + (CCA)n Simple_repeat Simple_repeat 1 213 0 3 806 468 62 0 0 chr4 29023286 29023350 -126606770 + (ATTTG)n Simple_repeat Simple_repeat 3 66 0 3 806 836 301 51 82 chr4 29024602 29024895 -126605225 - B4 SINE B4 -8 284 1 3 806 198 0 0 0 chr4 29025099 29025121 -126604999 + (ATTTG)n Simple_repeat Simple_repeat 4 25 0 3 806 820 204 30 40 chr4 29025121 29025320 -126604800 - B3 SINE B2 -16 200 4 3 806 189 312 167 56 chr4 29025567 29025747 -126604373 + MIRc SINE MIR 12 211 -57 3 806 228 35 0 0 chr4 29026409 29026438 -126603682 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 806 369 0 0 0 chr4 29026445 29026486 -126603634 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 806 270 289 46 15 chr4 29026731 29026861 -126603259 - Lx7 LINE L1 0 7696 7563 3 806 543 56 0 0 chr4 29027419 29027490 -126602630 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 806 280 239 90 0 chr4 29027592 29027659 -126602461 + Lx8 LINE L1 7151 7223 -250 4 806 284 127 120 53 chr4 29027710 29027785 -126602335 + Lx8 LINE L1 7392 7471 -2 4 806 26 50 0 0 chr4 29027884 29027924 -126602196 + AT_rich Low_complexity Low_complexity 1 40 0 4 806 323 181 14 0 chr4 29028399 29028471 -126601649 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 806 465 0 46 0 chr4 29029498 29029563 -126600557 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 806 247 292 44 11 chr4 29030454 29030544 -126599576 - MTEb LTR MaLR -9 370 278 4 806 626 37 12 0 chr4 29032669 29032750 -126597370 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 806 22 0 0 0 chr4 29033000 29033022 -126597098 + AT_rich Low_complexity Low_complexity 1 22 0 4 806 439 282 56 63 chr4 29033107 29033566 -126596554 - Lx8 LINE L1 -1325 6148 5696 4 806 541 284 60 20 chr4 29033581 29033732 -126596388 + MTD LTR MaLR 73 229 -190 4 806 351 113 0 0 chr4 29033848 29033901 -126596219 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 806 38 51 0 0 chr4 29034020 29034079 -126596041 + AT_rich Low_complexity Low_complexity 1 59 0 5 806 897 198 19 14 chr4 29034657 29034867 -126595253 + L1_Mur3 LINE L1 4850 5060 -820 5 806 3769 249 47 40 chr4 29034904 29035885 -126594235 - Lx6 LINE L1 -8 7452 6465 5 806 1844 169 3 3 chr4 29035887 29036207 -126593913 + RMER6D LTR ERVK 1 320 -400 5 806 234 0 0 0 chr4 29036210 29036236 -126593884 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 806 207 0 0 0 chr4 29036238 29036261 -126593859 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 806 1549 159 38 21 chr4 29036812 29037100 -126593020 + RMER6D LTR ERVK 398 690 0 5 806 466 171 0 0 chr4 29037114 29037190 -126592930 - Lx8 LINE L1 -801 5079 5004 4 806 207 0 0 0 chr4 29039389 29039412 -126590708 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 806 202 404 10 0 chr4 29041965 29042069 -126588051 - L2a LINE L2 -6 3420 3316 5 806 1153 256 114 11 chr4 29042219 29042587 -126587533 - MTD LTR MaLR -10 409 4 5 806 216 342 12 12 chr4 29042592 29042672 -126587448 - L2a LINE L2 -297 3129 3050 5 806 249 354 84 52 chr4 29042896 29043182 -126586938 - L2a LINE L2 -686 2733 2439 5 806 251 167 43 61 chr4 29043717 29043832 -126586288 + A-rich Low_complexity Low_complexity 2 114 0 6 806 740 307 4 29 chr4 29043841 29044116 -126586004 + Lx7 LINE L1 6862 7129 -567 6 806 201 328 37 37 chr4 29044582 29044718 -126585402 - L2a LINE L2 -1479 1940 1805 5 806 29 0 0 0 chr4 29045727 29045756 -126584364 + AT_rich Low_complexity Low_complexity 1 29 0 6 806 239 246 32 16 chr4 29046952 29047014 -126583106 + RMER3D3 LTR ERVK 515 577 -16 6 806 207 0 0 0 chr4 29047928 29047951 -126582169 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 806 1958 181 37 27 chr4 29047951 29048349 -126581771 + MTC LTR MaLR 19 421 0 6 806 391 254 24 11 chr4 29048553 29048687 -126581433 - PB1D10 SINE Alu 0 149 10 6 806 749 83 25 0 chr4 29049252 29049372 -126580748 - L1Md_F2 LINE L1 -1 6581 6459 6 806 437 327 40 14 chr4 29050583 29050806 -126579314 - L1MEg LINE L1 -4855 1229 1001 6 806 1352 302 125 36 chr4 29050840 29051759 -126578361 - Lx8 LINE L1 -31 7442 6443 6 806 468 0 0 0 chr4 29051799 29051851 -126578269 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 806 384 308 38 0 chr4 29051854 29051987 -126578133 - B3 SINE B2 -6 210 73 7 806 938 185 16 11 chr4 29052898 29053084 -126577036 + RLTR26 LTR ERVK 1 187 -455 7 806 272 128 0 0 chr4 29053263 29053302 -126576818 - RMER17A2 LTR ERVK -867 39 1 7 806 240 188 0 0 chr4 29054047 29054111 -126576009 + GA-rich Low_complexity Low_complexity 2 65 0 7 806 652 267 204 25 chr4 29054606 29054890 -126575230 + Lx8 LINE L1 7137 7471 -2 7 806 290 232 0 0 chr4 29054953 29055009 -126575111 + B4 SINE B4 28 83 -209 7 806 306 0 0 0 chr4 29055062 29055096 -126575024 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 806 474 49 0 0 chr4 29055930 29055991 -126574129 + (CACG)n Simple_repeat Simple_repeat 1 61 0 7 806 180 0 0 0 chr4 29057206 29057226 -126572894 + (CATAT)n Simple_repeat Simple_repeat 5 24 0 7 806 213 65 0 0 chr4 29057282 29057313 -126572807 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 806 900 35 0 0 chr4 29057453 29057593 -126572527 - L1Md_T LINE L1 0 6582 6458 8 806 22 35 0 0 chr4 29058415 29058444 -126571676 + AT_rich Low_complexity Low_complexity 1 29 0 8 806 914 181 74 20 chr4 29058749 29058952 -126571168 + URR1A DNA MER1_type 7 220 -6 8 806 727 105 16 0 chr4 29059650 29059774 -126570346 + (GA)n Simple_repeat Simple_repeat 1 126 0 8 806 483 130 0 0 chr4 29060402 29060479 -126569641 + (CAA)n Simple_repeat Simple_repeat 2 78 0 8 806 413 50 0 16 chr4 29061584 29061645 -126568475 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 8 806 414 57 0 0 chr4 29064035 29064088 -126566032 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 806 270 0 0 0 chr4 29064394 29064424 -126565696 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 806 306 317 40 0 chr4 29065045 29065146 -126564974 + U6 snRNA snRNA 1 105 -2 8 806 264 222 63 0 chr4 29065364 29065490 -126564630 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 9 806 600 199 51 166 chr4 29065593 29065828 -126564292 + B3 SINE B2 1 208 -8 9 806 277 321 101 36 chr4 29068301 29068469 -126561651 - B3A SINE B2 -19 179 1 9 806 2095 210 5 24 chr4 29068605 29068840 -126561280 - MTC LTR MaLR -9 412 186 9 806 3657 38 5 0 chr4 29068840 29069283 -126560837 - L1Md_F2 LINE L1 -1 6581 6137 9 806 2095 210 5 24 chr4 29069283 29069467 -126560653 - MTC LTR MaLR -236 185 1 9 806 260 336 56 63 chr4 29070631 29070774 -126559346 - MIRb SINE MIR -119 149 1 9 806 24 0 0 0 chr4 29071078 29071102 -126559018 + AT_rich Low_complexity Low_complexity 1 24 0 9 806 2026 177 89 5 chr4 29071484 29071875 -126558245 + Lx4A LINE L1 6634 7057 -1 9 806 1345 77 22 0 chr4 29071884 29072067 -126558053 + B2_Mm2 SINE B2 1 187 -8 9 806 26 50 0 0 chr4 29072067 29072107 -126558013 + AT_rich Low_complexity Low_complexity 1 40 0 9 806 316 319 79 5 chr4 29072222 29072411 -126557709 + MLT1C LTR MaLR 201 403 -64 1 806 349 310 26 99 chr4 29073384 29073688 -126556432 - MER34 LTR ERV1 -41 501 220 1 806 25 0 0 0 chr4 29074396 29074421 -126555699 + AT_rich Low_complexity Low_complexity 1 25 0 1 806 522 0 0 0 chr4 29074439 29074497 -126555623 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 806 356 273 9 57 chr4 29074860 29074965 -126555155 - B4A SINE B4 -3 289 190 1 806 7385 78 10 5 chr4 29074965 29076067 -126554053 + L1_Mus2 LINE L1 5457 6566 0 1 806 618 325 24 41 chr4 29076240 29076532 -126553588 - B4A SINE B4 -5 287 1 1 806 289 333 39 0 chr4 29076563 29076665 -126553455 - PB1D10 SINE Alu -1 116 11 1 806 991 176 57 0 chr4 29077565 29077741 -126552379 - B2_Mm2 SINE B2 -6 189 4 1 806 228 122 0 0 chr4 29077752 29077793 -126552327 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 806 1005 54 0 8 chr4 29077793 29077924 -126552196 - B1_Mus1 SINE Alu -1 147 18 1 806 876 43 8 0 chr4 29078511 29078628 -126551492 + B1_Mus1 SINE Alu 31 148 0 1 806 207 25 75 0 chr4 29078647 29078687 -126551433 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 806 246 62 0 0 chr4 29078815 29078847 -126551273 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 806 569 40 0 123 chr4 29080035 29080149 -126549971 + polypyrimidine Low_complexity Low_complexity 1 100 0 1 806 34 0 0 0 chr4 29080150 29080184 -126549936 + AT_rich Low_complexity Low_complexity 1 34 0 1 806 519 60 0 0 chr4 29081333 29081400 -126548720 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 806 5231 72 13 0 chr4 29081569 29082272 -126547848 - L1_Mus3 LINE L1 -1 6637 5926 1 806 182 203 81 48 chr4 29083033 29083095 -126547025 + L4 LINE RTE 324 387 -1642 1 806 180 302 62 104 chr4 29083755 29083851 -126546269 + L2c LINE L2 3288 3379 -8 1 806 26 50 0 0 chr4 29084184 29084224 -126545896 + AT_rich Low_complexity Low_complexity 1 40 0 1 806 800 71 9 0 chr4 29084230 29084342 -126545778 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 1 806 737 200 29 0 chr4 29084355 29084495 -126545625 - B1_Mur2 SINE Alu -4 145 2 1 806 236 287 0 11 chr4 29085025 29085113 -126545007 + GA-rich Low_complexity Low_complexity 2 88 0 1 806 1058 88 6 0 chr4 29085113 29085273 -126544847 + (GGA)n Simple_repeat Simple_repeat 2 162 0 1 806 1363 211 13 31 chr4 29085441 29085571 -126544549 - RMER1C Other Other -11 1331 1203 1 806 1033 128 6 11 chr4 29085571 29085752 -126544368 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 806 1363 211 13 31 chr4 29085752 29085939 -126544181 - RMER1C Other Other -140 1202 1020 1 806 471 48 0 0 chr4 29086573 29086635 -126543485 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 806 328 348 88 18 chr4 29086655 29086769 -126543351 - B1F2 SINE Alu -25 124 3 1 806 594 331 87 30 chr4 29087412 29087851 -126542269 + Lx8 LINE L1 6881 7344 -129 1 806 234 62 0 0 chr4 29088039 29088071 -126542049 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 806 1314 239 50 65 chr4 29088072 29088475 -126541645 - Lx9 LINE L1 -170 7474 7078 1 806 243 0 0 0 chr4 29088567 29088594 -126541526 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 806 24 32 0 0 chr4 29088776 29088807 -126541313 + AT_rich Low_complexity Low_complexity 1 31 0 1 806 7009 160 17 59 chr4 29089808 29090337 -126539783 + Lx2B LINE L1 4533 5075 -802 1 806 1134 62 7 7 chr4 29090337 29090484 -126539636 + B1_Mus1 SINE Alu 2 148 0 1 806 7009 177 32 33 chr4 29090484 29092435 -126537685 + Lx2B LINE L1 5076 7000 0 1 806 567 0 0 0 chr4 29093488 29093551 -126536569 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 806 1014 97 0 0 chr4 29093697 29093831 -126536289 + B1_Mus1 SINE Alu 3 136 -12 1 806 633 14 0 0 chr4 29093833 29093907 -126536213 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 1 806 2700 237 29 10 chr4 29095581 29096208 -126533912 + Lx7 LINE L1 6711 7349 -347 1 806 1127 226 26 49 chr4 29096260 29096609 -126533511 + Lx7 LINE L1 7356 7696 0 1 807 1342 24 0 0 chr4 29098717 29098884 -126531236 - ORR1A0 LTR MaLR -179 167 1 1 807 13683 55 12 5 chr4 29098884 29100662 -126529458 - ORR1A0-int LTR MaLR 0 1792 1 1 807 2953 29 0 3 chr4 29100662 29101009 -126529111 - ORR1A0 LTR MaLR 0 346 1 1 807 1027 118 0 22 chr4 29101009 29101191 -126528929 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 1 807 198 118 0 0 chr4 29101209 29101243 -126528877 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 807 555 346 11 16 chr4 29101247 29101438 -126528682 - B3A SINE B2 0 198 9 1 807 188 149 0 21 chr4 29102082 29102130 -126527990 + T-rich Low_complexity Low_complexity 3 49 0 1 807 21 36 0 0 chr4 29102728 29102756 -126527364 + AT_rich Low_complexity Low_complexity 1 28 0 1 807 265 108 71 24 chr4 29104078 29104163 -126525957 + (TTTG)n Simple_repeat Simple_repeat 1 89 0 1 807 518 188 51 0 chr4 29104163 29104280 -126525840 - B1_Mur1 SINE Alu -1 148 26 1 807 759 348 139 59 chr4 29104411 29105395 -126524725 - MTE-int LTR MaLR -478 1102 40 1 807 291 371 75 84 chr4 29105413 29105760 -126524360 - ORR1E LTR MaLR -8 351 8 1 807 24 32 0 0 chr4 29106027 29106058 -126524062 + AT_rich Low_complexity Low_complexity 1 31 0 1 807 365 0 22 0 chr4 29108224 29108269 -126521851 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 807 348 43 0 0 chr4 29108318 29108364 -126521756 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 807 486 0 0 0 chr4 29108368 29108422 -126521698 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 807 442 189 189 0 chr4 29108766 29108872 -126521248 + ORR1B2 LTR MaLR 1 126 -241 1 807 1238 98 59 5 chr4 29108872 29109076 -126521044 - L1Md_F2 LINE L1 -1 6581 6367 1 807 1700 47 46 9 chr4 29109076 29109293 -126520827 + L1Md_F2 LINE L1 6142 6366 -216 1 807 747 269 17 12 chr4 29109293 29109466 -126520654 + ORR1B2 LTR MaLR 117 290 -77 1 807 504 0 0 0 chr4 29109466 29109522 -126520598 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 807 1659 193 33 24 chr4 29110409 29110744 -126519376 - RMER20A LTR ERVK -166 350 13 1 807 3019 202 127 35 chr4 29111640 29111681 -126518439 - RMER1A Other Other -10 1020 980 1 807 2233 232 117 31 chr4 29111681 29112358 -126517762 - RMER19A LTR ERVK 0 737 3 1 807 3019 202 127 35 chr4 29112358 29112434 -126517686 - RMER1A Other Other -51 979 912 1 807 447 52 0 0 chr4 29112434 29112492 -126517628 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 807 3019 202 127 35 chr4 29112492 29112706 -126517414 - RMER1A Other Other -119 911 693 1 807 217 0 0 57 chr4 29112706 29112741 -126517379 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 807 978 154 23 11 chr4 29112741 29112918 -126517202 - B2_Mm2 SINE B2 -16 179 1 1 807 3019 244 95 22 chr4 29112918 29113647 -126516473 - RMER1A Other Other -338 692 2 1 807 782 273 81 35 chr4 29113650 29113914 -126516206 - RMER1A Other Other -776 254 39 1 807 2924 202 61 8 chr4 29113914 29114566 -126515554 + RMER6C LTR ERVK 4 690 0 1 807 399 331 75 53 chr4 29114566 29114739 -126515381 - RMER1B Other Other -643 423 251 1 807 4439 190 40 74 chr4 29114741 29115801 -126514319 + RLTR25B LTR ERVK 1 1024 -4 1 807 900 316 4 0 chr4 29115811 29116058 -126514062 - RMER1B Other Other -818 248 1 1 807 3722 131 36 5 chr4 29116566 29117151 -126512969 + Lx3A LINE L1 6370 6972 -9 1 807 221 83 28 0 chr4 29117214 29117250 -126512870 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 807 413 320 142 22 chr4 29118798 29119198 -126510922 - Lx7 LINE L1 -51 7422 6975 1 807 457 275 36 3 chr4 29119202 29119358 -126510762 - Lx7 LINE L1 -617 6856 6697 1 807 533 354 71 63 chr4 29120111 29120461 -126509659 - MLT1D LTR MaLR -129 376 24 1 807 1450 202 78 12 chr4 29120976 29121396 -126508724 - Lx7 LINE L1 -1740 5956 5502 1 807 29 0 0 0 chr4 29123426 29123455 -126506665 + AT_rich Low_complexity Low_complexity 1 29 0 1 807 477 0 0 0 chr4 29124473 29124526 -126505594 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 807 1006 87 0 0 chr4 29125101 29125239 -126504881 + B1_Mus1 SINE Alu 1 138 -10 1 807 303 192 0 0 chr4 29125281 29125359 -126504761 + GA-rich Low_complexity Low_complexity 4 81 0 1 807 3422 80 128 0 chr4 29125389 29125903 -126504217 + L1_Mus1 LINE L1 5988 6567 0 1 807 196 143 36 0 chr4 29126350 29126406 -126503714 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 807 2274 209 17 70 chr4 29126905 29127430 -126502690 - RLTR18B LTR ERVK -3 509 13 1 807 280 263 66 0 chr4 29128210 29128286 -126501834 - MTEb LTR MaLR -21 358 278 1 807 1290 291 40 9 chr4 29130162 29130512 -126499608 + MTD LTR MaLR 38 398 -21 1 807 219 170 0 21 chr4 29130901 29130949 -126499171 + A-rich Low_complexity Low_complexity 2 48 0 1 807 270 0 0 0 chr4 29132213 29132243 -126497877 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 807 363 136 0 0 chr4 29132245 29132304 -126497816 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 807 53 49 0 0 chr4 29133975 29134056 -126496064 + AT_rich Low_complexity Low_complexity 1 81 0 1 807 1300 183 29 0 chr4 29134521 29134761 -126495359 + ORR1D-int LTR MaLR 1099 1345 -25 1 807 534 155 0 0 chr4 29134852 29134949 -126495171 + T-rich Low_complexity Low_complexity 1 97 0 1 807 1085 62 14 0 chr4 29134950 29135094 -126495026 - B1_Mus1 SINE Alu -2 146 1 1 807 438 79 0 0 chr4 29136142 29136205 -126493915 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 807 1090 44 7 0 chr4 29136462 29136597 -126493523 + B1_Mus1 SINE Alu 3 138 -10 1 807 579 317 16 16 chr4 29137615 29137801 -126492319 + MER58A DNA MER1_type 27 212 -12 1 807 210 254 0 0 chr4 29140092 29140151 -126489969 + T-rich Low_complexity Low_complexity 1 59 0 1 807 11145 76 1 3 chr4 29140153 29142361 -126487759 - L1Md_F2 LINE L1 -1 6581 4378 1 807 35254 80 16 10 chr4 29142357 29148649 -126481471 - L1Md_T LINE L1 -1 6581 266 1 807 1137 159 158 4 chr4 29148660 29148888 -126481232 - Lx3B LINE L1 -5 6968 6706 1 807 21 0 0 0 chr4 29148896 29148917 -126481203 + AT_rich Low_complexity Low_complexity 1 21 0 1 807 234 160 0 0 chr4 29149190 29149240 -126480880 + T-rich Low_complexity Low_complexity 1 50 0 1 807 21 36 0 0 chr4 29149244 29149272 -126480848 + AT_rich Low_complexity Low_complexity 1 28 0 1 807 5556 244 82 9 chr4 29149273 29149666 -126480454 - Lx6 LINE L1 -177 7283 6880 1 807 246 32 0 0 chr4 29149666 29149697 -126480423 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 1 807 5556 244 82 9 chr4 29149697 29149830 -126480290 - Lx6 LINE L1 -581 6879 6744 1 807 180 0 0 0 chr4 29149830 29149850 -126480270 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 807 5556 244 82 9 chr4 29149850 29150186 -126479934 - Lx6 LINE L1 -717 6743 6387 1 807 387 0 0 0 chr4 29150186 29150229 -126479891 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 807 555 16 0 0 chr4 29150229 29150292 -126479828 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 807 5556 244 82 9 chr4 29150292 29150814 -126479306 - Lx6 LINE L1 -1074 6386 5795 1 807 1185 164 28 0 chr4 29150815 29151028 -126479092 - Lx6 LINE L1 -376 5504 5286 1 807 243 0 0 0 chr4 29151034 29151061 -126479059 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 807 989 58 7 28 chr4 29151061 29151195 -126478925 - B1_Mus1 SINE Alu -10 138 6 2 807 455 140 0 219 chr4 29151195 29151341 -126478779 - Lx6 LINE L1 -615 5265 5152 1 807 6143 213 36 33 chr4 29151345 29153192 -126476928 - L1_Mur3 LINE L1 -3106 2774 929 2 807 2608 45 45 3 chr4 29153192 29153524 -126476596 + ORR1A1 LTR MaLR 1 346 0 2 807 2252 246 88 25 chr4 29153524 29153864 -126476256 - L1_Mur3 LINE L1 -6800 928 546 2 807 25 31 0 0 chr4 29153868 29153900 -126476220 + AT_rich Low_complexity Low_complexity 1 32 0 2 807 335 227 80 0 chr4 29153938 29154026 -126476094 - L1MA8 LINE L1 -53 6238 6144 2 807 312 377 126 29 chr4 29154688 29154926 -126475194 + ORR1E LTR MaLR 1 261 -98 2 807 1390 292 24 40 chr4 29155779 29156204 -126473916 + MTD LTR MaLR 1 418 -1 2 807 357 78 0 0 chr4 29156803 29156809 -126473311 + (TC)n Simple_repeat Simple_repeat 1 6 0 2 807 834 64 0 0 chr4 29156809 29156918 -126473202 + (TTTTC)n Simple_repeat Simple_repeat 5 113 0 2 807 357 78 0 0 chr4 29156918 29156962 -126473158 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 807 388 340 0 28 chr4 29158035 29158144 -126471976 + PB1D10 SINE Alu 10 115 -2 2 807 234 327 171 57 chr4 29158144 29158210 -126471910 + B4A SINE B4 95 289 -3 2 807 207 0 0 0 chr4 29158760 29158783 -126471337 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 807 180 239 21 32 chr4 29159032 29159127 -126470993 + CT-rich Low_complexity Low_complexity 3 96 0 2 807 507 73 0 0 chr4 29159585 29159653 -126470467 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 807 4577 104 27 7 chr4 29159658 29160358 -126469762 - L1_Mus3 LINE L1 -7 6631 5918 2 807 1012 33 0 0 chr4 29160358 29160480 -126469640 + L1_Mus3 LINE L1 5775 5896 -742 2 807 3344 35 2 2 chr4 29160531 29160927 -126469193 + MTA_Mm LTR MaLR 1 396 0 2 807 9469 24 0 0 chr4 29160927 29162025 -126468095 + MTA_Mm-int LTR MaLR 1 1098 0 2 807 3343 35 2 2 chr4 29162025 29162421 -126467699 + MTA_Mm LTR MaLR 1 396 0 2 807 408 298 62 28 chr4 29162574 29162750 -126467370 - B3A SINE B2 -16 182 1 2 807 1491 282 30 30 chr4 29163054 29163492 -126466628 - RMER19C LTR ERVK 0 611 174 2 807 204 143 0 28 chr4 29164355 29164391 -126465729 + CT-rich Low_complexity Low_complexity 4 38 0 2 807 560 308 152 25 chr4 29164418 29164661 -126465459 - B4A SINE B4 -16 276 3 2 807 27650 25 0 0 chr4 29168046 29172225 -126457895 - L1Md_T LINE L1 0 6582 2431 2 807 243 225 0 0 chr4 29172451 29172522 -126457598 + CT-rich Low_complexity Low_complexity 1 71 0 2 807 3092 240 111 16 chr4 29173175 29174061 -126456059 + RMER1A Other Other 49 1018 -12 2 807 36868 6 1 0 chr4 29174063 29179647 -126450473 + L1Md_A LINE L1 1 5586 -297 2 807 9053 3 0 0 chr4 29179648 29180643 -126449477 + L1Md_A LINE L1 5588 6582 0 2 807 349 354 112 30 chr4 29180919 29181356 -126448764 - L2 LINE L2 -641 2778 2306 2 807 1924 221 40 6 chr4 29181924 29182913 -126447207 - Lx5 LINE L1 -666 6794 5462 2 807 926 333 31 89 chr4 29182901 29183454 -126446666 + Lx5 LINE L1 6512 7032 -18 2 807 254 192 0 37 chr4 29183772 29183826 -126446294 - B1_Mur1 SINE Alu -1 148 97 2 807 2875 88 8 8 chr4 29184607 29185007 -126445113 + MTA_Mm LTR MaLR 1 400 0 2 807 5572 156 96 38 chr4 29185007 29186194 -126443926 + MTA_Mm-int LTR MaLR 2 1258 0 2 807 3007 81 0 5 chr4 29186194 29186592 -126443528 + MTA_Mm LTR MaLR 1 396 0 2 807 545 345 79 26 chr4 29187453 29187881 -126442239 - HAL1b LINE L1 -608 1401 951 2 807 405 188 0 0 chr4 29188042 29188122 -126441998 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 807 298 221 81 0 chr4 29188264 29188356 -126441764 - PB1D9 SINE Alu -7 113 17 2 807 250 180 16 32 chr4 29188996 29189059 -126441061 - Lx8 LINE L1 -365 7108 7047 2 807 25 31 0 0 chr4 29189871 29189903 -126440217 + AT_rich Low_complexity Low_complexity 1 32 0 2 807 588 262 36 54 chr4 29189912 29190108 -126440012 + B3 SINE B2 1 216 0 2 807 1037 294 53 44 chr4 29190483 29190896 -126439224 - MTD LTR MaLR 0 419 3 2 807 28 0 0 0 chr4 29191089 29191117 -126439003 + AT_rich Low_complexity Low_complexity 1 28 0 2 807 240 277 15 0 chr4 29191182 29191247 -126438873 - ORR1C2 LTR MaLR -318 66 1 2 807 743 311 9 64 chr4 29191249 29191469 -126438651 - B4 SINE B4 -42 250 43 2 807 498 289 57 5 chr4 29191861 29192070 -126438050 + L1M5 LINE L1 4899 5118 -1028 2 807 271 224 40 0 chr4 29192068 29192144 -126437976 - L1MA6 LINE L1 -132 6168 6090 2 807 6783 83 2 3 chr4 29193106 29194570 -126435550 - L1Md_F2 LINE L1 0 6582 5120 2 807 14131 131 33 22 chr4 29194567 29197938 -126432182 - L1Md_F LINE L1 -2600 3283 59 2 807 25 0 0 0 chr4 29198477 29198502 -126431618 + AT_rich Low_complexity Low_complexity 1 25 0 2 807 2941 83 19 2 chr4 29198518 29198941 -126431179 - L1Md_F2 LINE L1 -72 6510 6081 2 807 448 322 60 34 chr4 29198941 29199131 -126430989 - B3A SINE B2 0 198 6 2 807 678 266 126 128 chr4 29199145 29199255 -126430865 - RLTR28B LTR ERVL -60 421 322 2 807 251 43 0 121 chr4 29199255 29199387 -126430733 + (CAG)n Simple_repeat Simple_repeat 2 117 0 2 807 678 266 126 128 chr4 29199387 29199698 -126430422 - RLTR28B LTR ERVL -160 321 1 2 807 326 298 53 85 chr4 29200032 29200278 -126429842 - RMER17C-int LTR ERVK -391 2847 2610 2 807 667 179 54 88 chr4 29200436 29200675 -126429445 - RLTR19-int LTR ERVK -2432 3705 3475 2 807 315 121 0 0 chr4 29201974 29202032 -126428088 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 807 422 167 24 102 chr4 29203161 29203288 -126426832 - RLTR19-int LTR ERVK -3129 3008 2892 2 807 398 251 46 36 chr4 29203460 29203654 -126426466 - MYSERV6-int LTR ERVK -1509 7450 7255 2 807 186 182 182 0 chr4 29204217 29204283 -126425837 - L2b LINE L2 -94 3281 3204 2 807 232 207 17 33 chr4 29204446 29204506 -126425614 - RLTR28 LTR ERVL -20 504 446 2 807 243 167 13 53 chr4 29204572 29204648 -126425472 + T-rich Low_complexity Low_complexity 3 75 0 2 807 3225 204 62 51 chr4 29204654 29205728 -126424392 - L1_Mur3 LINE L1 -3864 2016 929 2 807 2411 68 75 0 chr4 29205728 29206050 -126424070 - ORR1A1 LTR MaLR 0 346 1 2 807 3225 219 78 60 chr4 29206050 29206661 -126423459 - L1_Mur3 LINE L1 -6800 928 305 2 807 23 68 0 0 chr4 29207951 29207995 -126422125 + AT_rich Low_complexity Low_complexity 1 44 0 2 807 22 0 0 0 chr4 29210866 29210888 -126419232 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 260 145 0 28 chr4 29213103 29213174 -126416946 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 2 807 215 250 0 0 chr4 29213909 29213961 -126416159 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 807 1115 197 10 5 chr4 29214448 29214652 -126415468 - URR1B DNA MER1_type -2 223 19 2 807 581 175 13 89 chr4 29214789 29214946 -126415174 + B1_Mur4 SINE Alu 5 149 -1 2 807 1286 20 0 0 chr4 29215102 29215249 -126414871 + B1_Mm SINE Alu 1 147 0 2 807 186 43 0 0 chr4 29215249 29215272 -126414848 + (A)n Simple_repeat Simple_repeat 1 23 0 2 807 183 337 11 85 chr4 29215712 29215806 -126414314 - L2b LINE L2 -32 3343 3257 2 807 240 100 0 0 chr4 29216890 29216930 -126413190 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 807 311 271 160 24 chr4 29216931 29217056 -126413064 - MLT1H1 LTR MaLR -380 175 34 2 807 21 0 0 0 chr4 29217232 29217253 -126412867 + AT_rich Low_complexity Low_complexity 1 21 0 2 807 30 0 0 0 chr4 29217487 29217517 -126412603 + AT_rich Low_complexity Low_complexity 1 30 0 2 807 597 76 0 0 chr4 29217963 29218055 -126412065 + (TC)n Simple_repeat Simple_repeat 1 92 0 2 807 207 0 0 0 chr4 29218055 29218078 -126412042 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 807 200 333 0 15 chr4 29219731 29219798 -126410322 - MIR3 SINE MIR -25 183 118 2 807 252 364 151 7 chr4 29220011 29220163 -126409957 + MLT1F1 LTR MaLR 205 378 -191 2 807 1035 213 298 3 chr4 29220482 29220786 -126409334 - MTC LTR MaLR 0 419 26 2 807 21 57 0 0 chr4 29221351 29221386 -126408734 + AT_rich Low_complexity Low_complexity 1 35 0 2 807 1663 220 50 43 chr4 29222531 29222949 -126407171 + MTC LTR MaLR 1 421 0 2 807 4454 226 47 34 chr4 29223023 29224080 -126406040 + Lx5 LINE L1 5979 7049 -1 2 807 279 292 17 34 chr4 29224094 29224211 -126405909 + Lx2B LINE L1 6883 6997 -3 2 807 183 80 0 0 chr4 29224873 29224898 -126405222 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 807 705 24 0 0 chr4 29225066 29225149 -126404971 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 807 21 0 0 31 chr4 29225309 29225326 -126404794 + AT_rich Low_complexity Low_complexity 1 17 0 2 807 570 51 0 0 chr4 29225326 29225405 -126404715 + L1Md_T LINE L1 6504 6582 0 2 807 21 0 0 31 chr4 29225405 29225419 -126404701 + AT_rich Low_complexity Low_complexity 1 14 0 2 807 3967 103 32 100 chr4 29225835 29226623 -126403497 - RMER17A LTR ERVK -17 734 1 2 807 207 0 0 0 chr4 29227256 29227279 -126402841 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 807 268 321 64 9 chr4 29227803 29227913 -126402207 + PB1 SINE Alu 5 120 -7 2 807 227 200 19 39 chr4 29227869 29227921 -126402199 + ID_B1 SINE B4 174 224 0 2 807 414 0 0 0 chr4 29227926 29227972 -126402148 + (TAA)n Simple_repeat Simple_repeat 1 46 0 2 807 231 329 0 14 chr4 29227972 29228043 -126402077 + GA-rich Low_complexity Low_complexity 1 70 0 2 100 1697 291 61 54 chr4 29229009 29229240 -126400880 + RMER1C Other Other 528 776 -566 2 808 2423 185 34 11 chr4 29229240 29229716 -126400404 - Lx LINE L1 -3 6651 6165 2 808 1697 291 61 54 chr4 29229716 29229954 -126400166 + RMER1C Other Other 777 1002 -340 2 808 447 19 0 0 chr4 29229954 29230006 -126400114 + (CTA)n Simple_repeat Simple_repeat 1 52 0 2 808 1697 291 61 54 chr4 29230006 29230124 -126399996 + RMER1C Other Other 1003 1119 -223 2 808 407 78 16 0 chr4 29230131 29230195 -126399925 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 2 808 345 147 0 85 chr4 29230238 29230320 -126399800 + RMER1C Other Other 1266 1340 -2 2 808 21 36 0 0 chr4 29230501 29230529 -126399591 + AT_rich Low_complexity Low_complexity 1 28 0 2 808 471 165 121 0 chr4 29230681 29230772 -126399348 - B1_Mus2 SINE Alu -5 142 41 2 808 466 218 11 0 chr4 29230723 29230810 -126399310 - 4.5SRNA scRNA scRNA -6 88 1 3 808 228 304 9 18 chr4 29230825 29230939 -126399181 + L1M3 LINE L1 5815 5927 -253 3 808 342 149 88 25 chr4 29231168 29231257 -126398863 + ORR1C1 LTR MaLR 1 93 -301 3 808 224 288 0 0 chr4 29235344 29235403 -126394717 + MIR3 SINE MIR 120 178 -30 3 808 485 32 0 16 chr4 29237598 29237662 -126392458 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 808 358 325 61 9 chr4 29237665 29237780 -126392340 - RSINE1 SINE B4 -17 148 28 3 808 648 0 0 0 chr4 29237830 29237902 -126392218 + (TCTTG)n Simple_repeat Simple_repeat 2 73 0 3 808 218 20 38 75 chr4 29237921 29237974 -126392146 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 3 808 343 280 62 7 chr4 29238093 29238258 -126391862 - L1MA7 LINE L1 -230 5959 5787 3 808 221 235 20 0 chr4 29238695 29238746 -126391374 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 808 418 288 25 0 chr4 29238860 29238978 -126391142 - ORR1D2 LTR MaLR -248 122 2 3 808 301 278 41 0 chr4 29239044 29239141 -126390979 + MIR SINE MIR 138 238 -24 3 808 436 266 199 10 chr4 29239516 29239717 -126390403 - Lx8 LINE L1 -343 7130 6892 3 808 1093 317 38 8 chr4 29239705 29240099 -126390021 - Lx8 LINE L1 -686 6787 6382 3 808 286 110 10 52 chr4 29240427 29240523 -126389597 + (CAAA)n Simple_repeat Simple_repeat 2 93 0 3 808 1659 279 74 10 chr4 29240906 29241420 -126388700 - Lx9 LINE L1 -749 6895 6349 3 808 399 171 0 0 chr4 29241421 29241497 -126388623 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 808 3182 198 87 37 chr4 29241498 29242180 -126387940 - RMER1A Other Other -40 990 275 3 808 687 289 16 52 chr4 29242165 29242605 -126387515 - RMER1A Other Other -584 482 59 3 808 540 0 0 0 chr4 29242611 29242671 -126387449 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 808 2922 224 49 46 chr4 29242813 29243780 -126386340 - Lx9 LINE L1 -1606 6038 5049 3 808 411 56 0 0 chr4 29245297 29245351 -126384769 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 808 641 292 27 70 chr4 29246129 29246427 -126383693 - RMER15 LTR ERVL -15 560 276 3 808 2710 107 0 5 chr4 29246474 29246861 -126383259 + L1_Mus4 LINE L1 6224 6608 -28 3 808 849 62 0 0 chr4 29246861 29246973 -126383147 + (GGAAA)n Simple_repeat Simple_repeat 3 114 0 3 808 213 280 0 0 chr4 29247614 29247656 -126382464 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 808 186 43 0 0 chr4 29247656 29247679 -126382441 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 808 213 280 0 0 chr4 29247679 29247711 -126382409 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 808 22 0 0 0 chr4 29248209 29248231 -126381889 + AT_rich Low_complexity Low_complexity 1 22 0 3 808 300 359 42 28 chr4 29248441 29248656 -126381464 - RMER15 LTR ERVL -17 558 341 3 808 4006 111 30 20 chr4 29249319 29249928 -126380192 - Lx LINE L1 -16 6638 6024 3 808 1064 146 98 5 chr4 29249929 29250122 -126379998 - L1VL2 LINE L1 -6011 324 114 3 808 203 259 19 0 chr4 29253432 29253486 -126376634 + CT-rich Low_complexity Low_complexity 4 58 0 3 808 207 0 0 0 chr4 29253491 29253514 -126376606 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 808 251 200 35 84 chr4 29253517 29253659 -126376461 + (TCTCTG)n Simple_repeat Simple_repeat 3 137 0 3 808 283 265 24 0 chr4 29253567 29253650 -126376470 + (TCTG)n Simple_repeat Simple_repeat 4 88 0 3 808 486 359 72 24 chr4 29253774 29254108 -126376012 + MLT1A1 LTR MaLR 59 408 0 3 808 421 308 138 24 chr4 29255093 29255389 -126374731 + Lx9 LINE L1 6183 6512 -1132 3 808 640 230 120 6 chr4 29255483 29255658 -126374462 - Lx6 LINE L1 -566 6894 6700 3 808 746 273 120 18 chr4 29256281 29256564 -126373556 + Lx9 LINE L1 7133 7444 -200 3 808 26 30 0 0 chr4 29256671 29256704 -126373416 + AT_rich Low_complexity Low_complexity 1 33 0 3 808 1441 176 82 38 chr4 29256748 29257090 -126373030 - RLTR15 LTR ERVK -2 357 1 3 808 21 36 0 0 chr4 29257100 29257128 -126372992 + AT_rich Low_complexity Low_complexity 1 28 0 3 808 22 88 0 0 chr4 29257166 29257223 -126372897 + AT_rich Low_complexity Low_complexity 1 57 0 3 808 384 22 0 0 chr4 29257233 29257278 -126372842 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 808 180 0 0 0 chr4 29257910 29257930 -126372190 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 808 897 37 0 0 chr4 29258841 29258950 -126371170 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 3 808 210 150 0 0 chr4 29259654 29259694 -126370426 + (T)n Simple_repeat Simple_repeat 1 40 0 3 808 3086 165 178 71 chr4 29260513 29261315 -126368805 + RMER19B LTR ERVK 1 888 -14 3 808 3766 58 19 0 chr4 29262595 29263061 -126367059 + MT2C_Mm LTR ERVL 1 475 0 3 808 21 57 0 0 chr4 29263116 29263151 -126366969 + AT_rich Low_complexity Low_complexity 1 35 0 3 808 22 70 0 0 chr4 29263456 29263499 -126366621 + AT_rich Low_complexity Low_complexity 1 43 0 3 808 858 111 41 20 chr4 29263751 29263898 -126366222 - URR1A DNA MER1_type -32 194 45 3 808 462 269 14 29 chr4 29264017 29264155 -126365965 + RMER1B Other Other 588 723 -343 3 808 303 140 0 0 chr4 29264158 29264208 -126365912 + (CCA)n Simple_repeat Simple_repeat 1 50 0 3 808 672 203 0 27 chr4 29264733 29264880 -126365240 + RMER1C Other Other 48 190 -1152 3 808 426 127 0 0 chr4 29264895 29264966 -126365154 + (TCCCC)n Simple_repeat Simple_repeat 5 75 0 3 808 257 181 42 0 chr4 29264959 29265031 -126365089 + T-rich Low_complexity Low_complexity 2 76 0 3 808 679 160 0 138 chr4 29265036 29265203 -126364917 + RMER1C Other Other 1198 1341 -1 3 808 239 218 40 0 chr4 29265298 29265399 -126364721 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 808 407 268 24 0 chr4 29265671 29265798 -126364322 - Ricksha DNA MuDR -1690 1556 1427 3 808 565 287 68 54 chr4 29266442 29266722 -126363398 - MER34A LTR ERV1 0 571 288 3 808 244 264 45 11 chr4 29269898 29269986 -126360134 - L3 LINE CR1 -846 3643 3553 3 808 546 57 0 0 chr4 29271074 29271144 -126358976 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 808 435 19 0 0 chr4 29271214 29271266 -126358854 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 808 447 35 0 0 chr4 29271266 29271322 -126358798 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 808 307 254 188 60 chr4 29272312 29272429 -126357691 + B3A SINE B2 2 133 -65 3 808 264 30 0 0 chr4 29272451 29272484 -126357636 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 808 297 0 0 0 chr4 29273560 29273593 -126356527 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 808 241 174 0 0 chr4 29274514 29274560 -126355560 - Lx4B LINE L1 -107 6951 6906 3 808 894 179 4 139 chr4 29274535 29274794 -126355326 + Lx4B LINE L1 6684 6907 -151 3 808 1336 272 55 26 chr4 29274975 29275360 -126354760 + MTD LTR MaLR 10 405 -14 3 808 363 355 103 28 chr4 29277238 29277673 -126352447 + L1MCa LINE L1 324 791 -5717 3 808 234 258 120 30 chr4 29277902 29278002 -126352118 + B1_Mus1 SINE Alu 39 147 -1 3 808 3370 123 75 17 chr4 29278089 29278625 -126351495 - Lx2A1 LINE L1 -65 6943 6377 3 808 26 50 0 0 chr4 29279008 29279048 -126351072 + AT_rich Low_complexity Low_complexity 1 40 0 3 808 404 370 101 42 chr4 29279048 29279146 -126350974 - Lx9 LINE L1 -28 7445 7329 3 808 237 108 0 0 chr4 29279146 29279183 -126350937 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 808 1068 304 74 49 chr4 29279183 29279700 -126350420 - Lx9 LINE L1 -191 7453 6794 3 808 499 301 24 49 chr4 29279947 29280111 -126350009 - RSINE1 SINE B4 -1 164 5 3 808 205 308 76 93 chr4 29280868 29281040 -126349080 + MIR SINE MIR 94 262 0 3 808 2883 67 5 5 chr4 29281052 29281441 -126348679 - L1Md_F2 LINE L1 -12 6570 6182 3 808 29781 80 11 7 chr4 29281441 29282143 -126347977 - L1Md_F LINE L1 -470 5413 4715 3 808 4269 17 0 0 chr4 29282143 29282625 -126347495 - LTRIS_Mm LTR ERV1 0 482 1 3 808 29781 112 21 11 chr4 29282625 29287112 -126343008 - L1Md_F LINE L1 -1169 4714 174 3 808 25 0 0 0 chr4 29287224 29287249 -126342871 + AT_rich Low_complexity Low_complexity 1 25 0 3 808 22 0 0 0 chr4 29287651 29287673 -126342447 + AT_rich Low_complexity Low_complexity 1 22 0 3 808 352 358 17 58 chr4 29287977 29288149 -126341971 + B4 SINE B4 1 165 -127 3 808 181 163 41 0 chr4 29288242 29288291 -126341829 + GA-rich Low_complexity Low_complexity 5 55 0 3 808 297 0 0 0 chr4 29288318 29288351 -126341769 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 3 808 1137 75 0 0 chr4 29288364 29288511 -126341609 - B1_Mus2 SINE Alu 0 147 1 3 808 369 362 34 133 chr4 29289071 29289597 -126340523 - MER44B DNA MER2_type -38 512 38 3 808 226 216 27 0 chr4 29291819 29291893 -126338227 + GA-rich Low_complexity Low_complexity 3 78 0 3 808 8067 43 0 0 chr4 29292291 29293315 -126336805 + L1Md_T LINE L1 5607 6582 0 3 808 423 0 0 0 chr4 29293343 29293390 -126336730 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 808 255 280 131 45 chr4 29293877 29294053 -126336067 + MER110 LTR ERV1 282 472 -19 3 808 587 345 81 57 chr4 29294166 29294550 -126335570 - Lx8 LINE L1 -827 6646 6254 3 808 364 61 0 0 chr4 29295154 29295203 -126334917 + B1_Mus2 SINE Alu 89 137 -10 3 808 278 26 0 25 chr4 29295203 29295243 -126334877 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 808 2774 174 155 16 chr4 29295702 29296494 -126333626 - RMER19B LTR ERVK 0 902 1 3 808 329 320 21 0 chr4 29298056 29298153 -126331967 - B4A SINE B4 -2 290 192 3 808 948 307 36 21 chr4 29298254 29298534 -126331586 - B4A SINE B4 -6 286 3 3 808 210 200 29 0 chr4 29298541 29298611 -126331509 + T-rich Low_complexity Low_complexity 3 74 0 3 808 1119 62 0 7 chr4 29298708 29298854 -126331266 + B1_Mm SINE Alu 1 145 -2 3 808 279 0 0 0 chr4 29298858 29298889 -126331231 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 808 208 107 89 51 chr4 29298940 29299019 -126331101 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 3 808 592 331 138 47 chr4 29299070 29299537 -126330583 - MLT2B1 LTR ERVL -15 500 3 3 808 2704 107 9 12 chr4 29300739 29301165 -126328955 + L1_Mus3 LINE L1 6211 6635 -3 4 808 351 0 0 0 chr4 29301208 29301247 -126328873 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 808 1043 74 0 0 chr4 29301269 29301404 -126328716 + B1_Mus1 SINE Alu 5 139 -9 4 808 894 45 0 0 chr4 29301422 29301533 -126328587 + (GAA)n Simple_repeat Simple_repeat 2 112 0 4 808 266 242 87 48 chr4 29301545 29301649 -126328471 + Lx9 LINE L1 5110 5217 -630 4 808 1008 110 7 0 chr4 29301713 29301858 -126328262 + B1_Mus1 SINE Alu 2 147 -1 4 808 1667 220 58 54 chr4 29301877 29302377 -126327743 + Lx9 LINE L1 5242 5743 -104 4 808 276 149 0 0 chr4 29302389 29302436 -126327684 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 808 324 214 28 84 chr4 29302436 29302590 -126327530 + Lx9 LINE L1 5738 5891 -1753 4 808 186 208 0 0 chr4 29302661 29302709 -126327411 + GA-rich Low_complexity Low_complexity 2 49 0 4 808 1372 181 217 8 chr4 29302856 29303224 -126326896 + Lx4A LINE L1 6614 7058 0 4 808 387 0 0 0 chr4 29303324 29303367 -126326753 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 808 589 232 64 0 chr4 29303381 29303506 -126326614 - B1_Mur4 SINE Alu -13 137 5 4 808 508 290 86 0 chr4 29303521 29303683 -126326437 + Lx9 LINE L1 6344 6519 -1125 4 808 819 181 84 6 chr4 29303753 29303920 -126326200 + URR1A DNA MER1_type 47 226 0 4 808 511 248 16 0 chr4 29303932 29304057 -126326063 + Lx9 LINE L1 6581 6707 -937 4 808 6547 90 22 2 chr4 29304077 29304151 -126325969 - L1_Mus3 LINE L1 -10 6628 6555 4 808 189 0 0 0 chr4 29304151 29304172 -126325948 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 4 808 6547 90 22 2 chr4 29304172 29305021 -126325099 - L1_Mus3 LINE L1 -84 6554 5688 4 808 959 266 76 14 chr4 29305022 29305312 -126324808 + Lx9 LINE L1 6743 7050 -594 4 808 1059 287 0 22 chr4 29305336 29305657 -126324463 + Lx9 LINE L1 7148 7461 -183 4 808 450 0 0 0 chr4 29305659 29305709 -126324411 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 808 720 35 0 0 chr4 29305709 29305795 -126324325 + (GA)n Simple_repeat Simple_repeat 1 87 0 4 808 225 253 20 31 chr4 29305796 29305894 -126324226 + Lx9 LINE L1 7533 7629 -15 4 808 600 171 0 0 chr4 29306297 29306408 -126323712 + GA-rich Low_complexity Low_complexity 4 114 0 4 808 1245 223 146 26 chr4 29308130 29308521 -126321599 - MER67D LTR ERV1 0 514 77 4 808 1765 100 59 18 chr4 29310371 29310657 -126319463 + L1Md_F2 LINE L1 6283 6580 -2 4 808 21 36 0 0 chr4 29311230 29311258 -126318862 + AT_rich Low_complexity Low_complexity 1 28 0 4 808 441 0 0 0 chr4 29311661 29311710 -126318410 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 808 1020 306 112 11 chr4 29311890 29312242 -126317878 + MTEa LTR MaLR 1 377 -2 4 808 299 171 117 13 chr4 29312242 29312319 -126317801 + Lx7 LINE L1 7029 7113 -583 4 808 600 53 0 0 chr4 29312323 29312399 -126317721 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 808 29 60 0 0 chr4 29312695 29312745 -126317375 + AT_rich Low_complexity Low_complexity 1 50 0 4 808 22 0 0 0 chr4 29312821 29312843 -126317277 + AT_rich Low_complexity Low_complexity 1 22 0 4 808 7690 70 14 1 chr4 29312847 29314374 -126315746 - L1Md_F2 LINE L1 -2 6580 5029 4 808 286 167 127 0 chr4 29314520 29314590 -126315530 - BC1_Mm scRNA scRNA 0 83 6 4 808 295 296 26 44 chr4 29314831 29314944 -126315176 - PB1D10 SINE Alu 0 117 7 4 808 234 321 128 73 chr4 29314955 29315368 -126314752 - Zaphod DNA Tip100 -917 3114 2679 4 808 751 328 68 12 chr4 29315387 29315708 -126314412 + MER2 DNA MER2_type 7 345 0 4 808 354 339 70 0 chr4 29316172 29316287 -126313833 - B1F2 SINE Alu -6 143 21 4 808 260 333 107 61 chr4 29316287 29316303 -126313817 - ID_B1 SINE B4 -6 218 82 4 808 870 249 40 0 chr4 29316574 29316775 -126313345 - MTD LTR MaLR -14 405 197 4 808 209 79 79 0 chr4 29316775 29316813 -126313307 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 4 808 629 246 65 70 chr4 29316813 29317014 -126313106 - MTD LTR MaLR -201 218 19 4 808 1172 228 168 14 chr4 29317014 29317378 -126312742 - MTC LTR MaLR 0 421 2 4 808 678 310 18 92 chr4 29317465 29317792 -126312328 + MLT1F-int LTR MaLR 289 591 -898 4 808 351 0 0 0 chr4 29317912 29317951 -126312169 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 808 257 382 95 26 chr4 29318259 29318490 -126311630 + MLT1F-int LTR MaLR 1192 1438 -51 4 808 1867 197 29 17 chr4 29318743 29319418 -126310702 + Lx4A LINE L1 6376 7053 -5 4 808 2084 298 72 22 chr4 29319412 29319497 -126310623 + Lx7 LINE L1 5826 5919 -1777 4 808 390 57 0 0 chr4 29319497 29319550 -126310570 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 808 2084 298 72 22 chr4 29319550 29319905 -126310215 + Lx7 LINE L1 5920 6283 -1413 4 808 360 0 0 0 chr4 29319905 29319945 -126310175 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 808 2084 298 72 22 chr4 29319945 29320120 -126310000 + Lx7 LINE L1 6284 6481 -1215 4 808 441 0 0 0 chr4 29320120 29320169 -126309951 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 808 2084 298 72 22 chr4 29320169 29320465 -126309655 + Lx7 LINE L1 6482 6783 -913 4 808 763 296 46 28 chr4 29320478 29320763 -126309357 + Lx7 LINE L1 7012 7301 -395 4 808 427 147 20 0 chr4 29320856 29320958 -126309162 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 4 808 4207 69 0 47 chr4 29321502 29322096 -126308024 + L1_Mus2 LINE L1 6001 6566 0 4 808 669 227 23 0 chr4 29322944 29323076 -126307044 + B1_Mus2 SINE Alu 11 145 -2 4 808 211 152 0 61 chr4 29323091 29323140 -126306980 + A-rich Low_complexity Low_complexity 1 46 0 4 808 256 204 0 36 chr4 29323149 29323205 -126306915 - MTC LTR MaLR -261 160 107 4 808 1426 304 98 98 chr4 29323286 29324102 -126306018 - MTE2a-int LTR MaLR -10 1570 344 4 808 227 257 51 63 chr4 29324159 29324238 -126305882 - MTE2a-int LTR MaLR -1500 80 3 4 808 564 305 75 102 chr4 29324239 29324655 -126305465 - MTE2a LTR MaLR -29 390 1 4 808 244 210 16 16 chr4 29324884 29324947 -126305173 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 808 228 250 146 0 chr4 29325066 29325162 -126304958 - L1MD LINE L1 -617 5625 5516 4 808 386 164 0 0 chr4 29325785 29325852 -126304268 + MTE2b LTR MaLR 313 379 0 4 808 218 350 113 0 chr4 29326403 29326500 -126303620 + MIR SINE MIR 65 172 -90 4 808 36 23 0 0 chr4 29326864 29326907 -126303213 + AT_rich Low_complexity Low_complexity 1 43 0 4 808 29 0 0 0 chr4 29326959 29326988 -126303132 + AT_rich Low_complexity Low_complexity 1 29 0 4 808 369 0 0 0 chr4 29327173 29327214 -126302906 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 808 625 290 66 25 chr4 29328281 29328479 -126301641 + B4 SINE B4 24 229 -63 4 808 721 152 6 6 chr4 29328479 29328651 -126301469 + GA-rich Low_complexity Low_complexity 1 172 0 4 808 204 40 0 0 chr4 29328651 29328676 -126301444 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 4 808 234 0 0 0 chr4 29328969 29328995 -126301125 + (T)n Simple_repeat Simple_repeat 1 26 0 4 808 6941 34 0 0 chr4 29330154 29330957 -126299163 + RLTR13B4 LTR ERVK 1 803 0 4 808 486 0 0 0 chr4 29331394 29331448 -126298672 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 808 414 0 0 0 chr4 29331802 29331848 -126298272 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 4 808 1797 136 7 0 chr4 29332072 29332345 -126297775 + ORR1A2 LTR MaLR 12 286 -41 4 808 3793 42 0 0 chr4 29332345 29332797 -126297323 - L1Md_T LINE L1 -121 6461 6010 4 808 833 27 0 0 chr4 29332797 29332909 -126297211 + L1Md_A LINE L1 6471 6582 0 4 808 455 37 0 0 chr4 29332909 29332963 -126297157 + ORR1A2 LTR MaLR 273 326 0 4 808 480 62 0 0 chr4 29333086 29333150 -126296970 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 808 2873 40 3 0 chr4 29334007 29334361 -126295759 + L1Md_T LINE L1 6228 6582 0 4 808 28 29 0 0 chr4 29334475 29334510 -126295610 + AT_rich Low_complexity Low_complexity 1 35 0 4 808 455 193 204 48 chr4 29334532 29334679 -126295441 + URR1A DNA MER1_type 3 172 -54 4 808 2484 267 67 29 chr4 29335122 29335944 -126294176 + Lx8 LINE L1 6221 7073 -400 4 808 374 321 97 55 chr4 29335990 29336132 -126293988 + Lx8 LINE L1 7197 7360 -113 4 808 452 86 0 14 chr4 29336132 29336203 -126293917 + (CATA)n Simple_repeat Simple_repeat 2 71 0 4 808 374 321 97 55 chr4 29336203 29336317 -126293803 + Lx8 LINE L1 7361 7463 -10 4 808 963 147 0 0 chr4 29336319 29336482 -126293638 + (GA)n Simple_repeat Simple_repeat 2 164 0 4 808 346 303 47 33 chr4 29336490 29336640 -126293480 - RMER5 LTR ERV1 -274 260 109 4 808 379 370 63 59 chr4 29336805 29337043 -126293077 - B4A SINE B4 -45 247 9 4 808 2273 184 44 79 chr4 29338969 29339159 -126290961 + RLTR28 LTR ERVL 1 182 -342 4 808 5028 116 58 25 chr4 29339159 29340015 -126290105 - RMER17D LTR ERVK -4 885 1 4 808 2273 184 44 79 chr4 29340015 29340280 -126289840 + RLTR28 LTR ERVL 183 442 -82 4 808 2696 22 81 0 chr4 29340280 29340600 -126289520 + ORR1A0 LTR MaLR 1 346 0 4 808 2273 184 44 79 chr4 29340600 29340686 -126289434 + RLTR28 LTR ERVL 443 524 0 4 808 284 0 0 27 chr4 29340931 29340968 -126289152 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 808 2772 62 0 16 chr4 29341030 29341409 -126288711 - L1Md_F2 LINE L1 0 6582 6210 4 808 394 77 0 0 chr4 29341409 29341461 -126288659 + L1Md_F2 LINE L1 6141 6192 -390 4 808 476 246 51 38 chr4 29342755 29343029 -126287091 + RLTR42-int LTR ERVK 1953 2330 -3807 4 808 736 195 13 0 chr4 29344584 29344738 -126285382 + RLTR28 LTR ERVL 369 524 0 4 808 215 318 68 86 chr4 29344841 29344958 -126285162 + MER5A DNA MER1_type 74 188 -1 4 808 22 0 0 0 chr4 29346724 29346746 -126283374 + AT_rich Low_complexity Low_complexity 1 22 0 4 808 296 295 13 0 chr4 29347462 29347540 -126282580 + ID4_ SINE ID 4 82 -1 4 808 324 316 59 39 chr4 29348293 29348395 -126281725 + RSINE1 SINE B4 4 107 -58 4 808 180 77 0 0 chr4 29348557 29348583 -126281537 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 808 881 262 110 31 chr4 29349287 29349705 -126280415 + L1M2 LINE L1 4942 5392 -751 4 808 6977 105 11 14 chr4 29349895 29350602 -126279518 + L1_Mus2 LINE L1 5186 5892 -674 4 808 2117 97 228 0 chr4 29350602 29350944 -126279176 + RLTR9B2 LTR ERVK 1 420 0 4 808 6977 81 22 28 chr4 29350944 29351623 -126278497 + L1_Mus2 LINE L1 5893 6566 0 4 808 303 287 20 0 chr4 29351665 29351766 -126278354 + L1MA5 LINE L1 6082 6184 -116 4 808 259 188 0 0 chr4 29351966 29352014 -126278106 + Lx2 LINE L1 5090 5137 -740 4 808 889 149 52 7 chr4 29352014 29352169 -126277951 + ORR1B1 LTR MaLR 183 344 -50 4 808 8905 145 22 7 chr4 29352181 29354010 -126276110 + Lx2 LINE L1 5130 6995 -2 4 808 416 19 0 19 chr4 29354422 29354476 -126275644 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 808 264 59 0 0 chr4 29354476 29354509 -126275611 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 808 303 256 0 100 chr4 29355038 29355138 -126274982 + B3 SINE B2 90 179 -37 4 808 25 0 0 0 chr4 29355660 29355685 -126274435 + AT_rich Low_complexity Low_complexity 1 25 0 4 808 21 82 0 0 chr4 29356575 29356624 -126273496 + AT_rich Low_complexity Low_complexity 1 49 0 4 808 456 167 21 0 chr4 29356679 29356775 -126273345 - Lx2 LINE L1 -2 6995 6898 4 808 2799 96 13 2 chr4 29356909 29357307 -126272813 - L1_Mus1 LINE L1 0 6567 6166 4 808 24 32 0 0 chr4 29357420 29357451 -126272669 + AT_rich Low_complexity Low_complexity 1 31 0 5 808 317 309 57 0 chr4 29357465 29357640 -126272480 - L1MA6 LINE L1 -50 6250 6066 5 808 473 282 83 18 chr4 29357655 29357872 -126272248 - L1MA6 LINE L1 -293 6007 5777 5 808 236 313 26 0 chr4 29358438 29358553 -126271567 - Lx8 LINE L1 -2 7471 7354 5 809 373 241 11 11 chr4 29360848 29360933 -126269187 - MTD LTR MaLR -13 408 324 5 809 807 265 97 30 chr4 29360933 29361246 -126268874 + ORR1D1 LTR MaLR 1 370 0 5 809 1123 307 24 24 chr4 29361246 29361568 -126268552 - MTD LTR MaLR -95 324 3 5 809 446 84 28 0 chr4 29361569 29361640 -126268480 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 5 809 590 303 67 9 chr4 29361891 29362114 -126268006 - Lx8 LINE L1 -398 7075 6840 5 809 1009 176 0 34 chr4 29362129 29362305 -126267815 + Lx4A LINE L1 6803 6972 -86 5 809 6096 158 6 52 chr4 29362330 29363554 -126266566 + L1_Mur1 LINE L1 2968 4135 -1751 5 809 2025 77 0 45 chr4 29363595 29363909 -126266211 + MusHAL1 LINE L1 1771 2070 -642 5 809 3313 119 23 2 chr4 29363902 29364430 -126265690 + L1_Mm LINE L1 4136 4674 -1209 5 809 17598 177 34 20 chr4 29364431 29368031 -126262089 - L1_Mur2 LINE L1 -134 5743 2094 5 809 439 104 78 0 chr4 29368031 29368108 -126262012 - L1_Mur2 LINE L1 -3722 2155 2073 5 809 12812 50 1 2 chr4 29368109 29370394 -126259726 - L1Md_F2 LINE L1 0 6582 4303 5 809 3503 198 21 10 chr4 29370429 29371544 -126258576 - L1_Mur2 LINE L1 -3869 2008 882 5 809 790 298 34 14 chr4 29372114 29372322 -126257798 - B3 SINE B2 -2 214 3 5 809 212 216 20 0 chr4 29372449 29372500 -126257620 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 809 877 303 122 51 chr4 29372553 29374358 -126255762 - L1M2 LINE L1 -59 5821 3872 5 809 350 100 0 16 chr4 29374530 29374591 -126255529 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 809 458 339 53 72 chr4 29374599 29374863 -126255257 - B4A SINE B4 -30 262 4 5 809 381 308 10 0 chr4 29374866 29375061 -126255059 - L1M2 LINE L1 -2123 3757 3561 5 809 557 313 104 35 chr4 29375111 29375458 -126254662 - L1M4c LINE L1 -2651 3728 3358 5 809 938 309 89 0 chr4 29375463 29375767 -126254353 - MTD LTR MaLR -88 331 1 5 809 293 325 8 8 chr4 29376452 29376579 -126253541 - L1M4c LINE L1 -4697 1687 1561 5 809 916 281 55 42 chr4 29376700 29377168 -126252952 - Lx9 LINE L1 -154 7490 6881 5 809 186 209 0 0 chr4 29377281 29377324 -126252796 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 809 1890 208 55 2 chr4 29377599 29377999 -126252121 + MTC LTR MaLR 1 421 0 5 809 423 0 0 0 chr4 29378039 29378086 -126252034 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 5 809 275 0 29 0 chr4 29378271 29378306 -126251814 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 809 378 0 0 0 chr4 29378306 29378347 -126251773 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 809 501 17 0 0 chr4 29378347 29378404 -126251716 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 809 1590 268 28 8 chr4 29379197 29379592 -126250528 + MTD LTR MaLR 1 403 -16 5 809 222 346 12 37 chr4 29380039 29380120 -126250000 - ID_B1 SINE B4 -126 98 20 5 809 378 44 29 29 chr4 29381082 29381152 -126248968 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 5 809 21 0 0 0 chr4 29381734 29381755 -126248365 + AT_rich Low_complexity Low_complexity 1 21 0 5 809 365 333 76 0 chr4 29381774 29381879 -126248241 - RSINE1 SINE B4 -36 129 17 5 809 2054 83 6 60 chr4 29382037 29382356 -126247764 + L1_Mus2 LINE L1 6259 6560 -6 5 809 642 26 0 0 chr4 29382356 29382432 -126247688 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 809 659 122 164 9 chr4 29382487 29382603 -126247517 - B1_Mus1 SINE Alu -13 135 2 5 809 403 321 73 16 chr4 29382876 29383203 -126246917 - L1MA8 LINE L1 -243 6057 5701 5 809 423 0 0 0 chr4 29383279 29383326 -126246794 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 809 553 196 143 37 chr4 29383895 29384112 -126246008 - Lx9 LINE L1 0 7644 7405 5 809 386 20 20 0 chr4 29384477 29384528 -126245592 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5 809 227 31 0 30 chr4 29384790 29384823 -126245297 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 809 22 35 0 0 chr4 29385205 29385234 -126244886 + AT_rich Low_complexity Low_complexity 1 29 0 5 809 222 137 39 19 chr4 29385793 29385845 -126244275 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 5 809 1993 9 0 0 chr4 29385859 29386082 -126244038 - L1Md_A LINE L1 -283 6299 6077 5 809 1495 11 0 0 chr4 29386082 29386259 -126243861 + L1Md_A LINE L1 6406 6582 0 5 809 1405 37 48 5 chr4 29386259 29386447 -126243673 - L1Md_F3 LINE L1 0 6584 6389 5 809 657 266 7 28 chr4 29386561 29386704 -126243416 - B1_Mur2 SINE Alu -8 141 2 5 809 226 231 10 87 chr4 29386755 29386859 -126243261 + CT-rich Low_complexity Low_complexity 5 100 0 5 809 1137 255 14 34 chr4 29386886 29387182 -126242938 - Lx5 LINE L1 0 7050 6761 5 809 1192 222 40 102 chr4 29387176 29387547 -126242573 + Lx5 LINE L1 6099 6446 -604 5 809 5155 49 9 0 chr4 29387554 29388192 -126241928 - L1Md_F2 LINE L1 0 6582 5939 5 809 238 247 42 73 chr4 29388348 29388444 -126241676 - MLT1A1 LTR MaLR -8 400 308 5 809 298 328 34 81 chr4 29388613 29388762 -126241358 + MLT1F2 LTR MaLR 418 559 -1 5 809 1358 155 5 0 chr4 29391021 29391240 -126238880 + URR1A DNA MER1_type 6 225 -1 5 809 249 33 0 0 chr4 29391636 29391666 -126238454 + (A)n Simple_repeat Simple_repeat 1 30 0 5 809 429 20 0 0 chr4 29391756 29391806 -126238314 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 809 225 260 0 0 chr4 29392565 29392615 -126237505 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 809 506 309 34 38 chr4 29394187 29394396 -126235724 + ID_B1 SINE B4 4 211 -13 5 809 1118 58 0 0 chr4 29394448 29394585 -126235535 - B1_Mm SINE Alu -9 138 2 5 809 342 0 0 0 chr4 29395472 29395510 -126234610 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 809 686 302 44 91 chr4 29396092 29396484 -126233636 - MTE2a LTR MaLR -1 378 12 5 809 1069 140 250 22 chr4 29396777 29397069 -126233051 - ORR1C1 LTR MaLR -8 359 1 5 809 35 0 0 0 chr4 29397401 29397436 -126232684 + AT_rich Low_complexity Low_complexity 1 35 0 5 809 640 288 68 10 chr4 29397509 29397716 -126232404 - ID_B1 SINE B4 -5 219 1 5 809 2467 228 37 21 chr4 29398768 29399392 -126230728 - Lx9 LINE L1 -284 7360 6727 5 809 436 197 347 24 chr4 29399392 29399497 -126230623 + Lx9 LINE L1 7362 7490 -154 5 809 312 27 0 0 chr4 29399497 29399534 -126230586 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 809 383 0 0 21 chr4 29399534 29399581 -126230539 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 809 436 197 347 24 chr4 29399581 29399687 -126230433 + Lx9 LINE L1 7491 7642 -2 5 809 21 0 0 0 chr4 29399960 29399981 -126230139 + AT_rich Low_complexity Low_complexity 1 21 0 5 809 27 49 0 0 chr4 29400126 29400167 -126229953 + AT_rich Low_complexity Low_complexity 1 41 0 5 809 1074 108 0 0 chr4 29400492 29400640 -126229480 + B1_Mus1 SINE Alu 1 148 0 5 809 5686 66 13 10 chr4 29401260 29402046 -126228074 - L1Md_F2 LINE L1 0 6582 5812 5 809 743 11 0 21 chr4 29402326 29402410 -126227710 + (TTC)n Simple_repeat Simple_repeat 1 83 0 5 809 1023 133 0 0 chr4 29402410 29402575 -126227545 + (CCCCCT)n Simple_repeat Simple_repeat 5 169 0 5 809 743 11 0 21 chr4 29402575 29402583 -126227537 + (TTC)n Simple_repeat Simple_repeat 2 9 0 5 809 331 351 45 8 chr4 29402912 29403044 -126227076 - L2a LINE L2 -1 3425 3289 5 809 3001 169 77 2 chr4 29403714 29404234 -126225886 - RMER13A LTR ERVK -301 559 1 5 809 405 158 22 219 chr4 29404239 29404417 -126225703 + RMER20B LTR ERVK 350 492 -135 5 809 515 199 200 29 chr4 29404473 29404613 -126225507 + RMER20B LTR ERVK 464 627 0 5 809 382 207 155 0 chr4 29404975 29405091 -126225029 - MER2 DNA MER2_type -154 191 58 5 809 1396 229 35 102 chr4 29405110 29405578 -126224542 - Lx7 LINE L1 -8 7688 7249 5 809 1130 226 122 94 chr4 29405578 29405815 -126224305 - ORR1C1 LTR MaLR -3 375 166 5 809 602 58 11 0 chr4 29405815 29405902 -126224218 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 809 1130 226 122 94 chr4 29405902 29406026 -126224094 - ORR1C1 LTR MaLR -213 165 4 5 809 1396 229 35 102 chr4 29406026 29406078 -126224042 - Lx7 LINE L1 -448 7248 7203 5 809 2245 198 86 33 chr4 29406103 29406625 -126223495 + RMER15 LTR ERVL 23 572 -3 5 809 808 196 29 79 chr4 29406628 29406905 -126223215 - L1_Mur3 LINE L1 -7444 268 6 5 809 897 290 75 35 chr4 29407071 29407564 -126222556 - LTR40a LTR ERVL -3 516 4 5 809 201 383 17 17 chr4 29407582 29407699 -126222421 - MIRc SINE MIR -119 149 33 5 809 333 0 0 0 chr4 29408185 29408222 -126221898 + (T)n Simple_repeat Simple_repeat 1 37 0 5 809 434 336 13 27 chr4 29409647 29409797 -126220323 - B1_Mur1 SINE Alu -1 148 1 5 809 300 325 68 74 chr4 29409797 29409971 -126220149 - B4A SINE B4 -69 223 51 5 809 189 121 0 0 chr4 29410653 29410686 -126219434 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 5 809 184 194 0 0 chr4 29410991 29411022 -126219098 + L3 LINE CR1 3376 3406 -1083 5 809 513 0 0 0 chr4 29411160 29411217 -126218903 + (TTA)n Simple_repeat Simple_repeat 3 59 0 5 809 7228 157 57 6 chr4 29411217 29412869 -126217251 - Lx3C LINE L1 -14 6962 5233 5 809 360 0 0 0 chr4 29412869 29412909 -126217211 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 809 180 77 0 0 chr4 29412909 29412935 -126217185 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 809 6862 145 68 10 chr4 29412935 29413549 -126216571 - Lx3C LINE L1 -654 5232 4569 5 809 816 141 32 39 chr4 29413545 29413700 -126216420 - Lx3C LINE L1 -2148 3729 3576 5 809 24 0 0 0 chr4 29414203 29414227 -126215893 + AT_rich Low_complexity Low_complexity 1 24 0 5 809 280 345 26 8 chr4 29414885 29415041 -126215079 + MER33 DNA MER1_type 12 151 -173 5 809 774 251 27 27 chr4 29415095 29415283 -126214837 - B3 SINE B2 -28 188 1 5 809 390 184 0 0 chr4 29416598 29416674 -126213446 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 809 295 373 73 0 chr4 29416708 29416818 -126213302 + B1F SINE Alu 1 118 -31 5 809 1223 85 11 0 chr4 29416850 29417027 -126213093 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 809 620 283 49 25 chr4 29417027 29417230 -126212890 + B3 SINE B2 3 210 -6 5 809 262 328 65 16 chr4 29417914 29418038 -126212082 + L1MA5A LINE L1 5806 5935 -362 5 809 1272 211 111 16 chr4 29419739 29420119 -126210001 - MTD LTR MaLR -1 418 3 5 809 432 345 18 68 chr4 29420973 29421194 -126208926 + B3 SINE B2 4 213 -3 6 809 419 242 0 0 chr4 29421236 29421327 -126208793 - Lx5 LINE L1 -647 6403 6313 6 809 429 361 26 33 chr4 29421477 29421629 -126208491 - RSINE1 SINE B4 -12 153 3 6 809 1513 50 0 5 chr4 29422532 29422732 -126207388 - L1_Mus2 LINE L1 0 6566 6368 6 809 248 0 0 30 chr4 29425534 29425567 -126204553 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 809 2654 112 33 21 chr4 29426808 29427227 -126202893 + Lx LINE L1 6230 6653 -1 6 809 288 365 63 28 chr4 29427759 29428044 -126202076 + MLT1D LTR MaLR 204 498 -7 6 809 24 0 0 0 chr4 29428651 29428675 -126201445 + AT_rich Low_complexity Low_complexity 1 24 0 6 809 468 353 91 70 chr4 29428941 29429227 -126200893 + B4 SINE B4 1 292 0 6 809 1011 276 50 28 chr4 29429506 29429864 -126200256 + ORR1D2 LTR MaLR 3 368 -2 6 809 2826 188 25 2 chr4 29431050 29431603 -126198517 + L1_Mur3 LINE L1 5022 5587 -293 6 809 1018 55 0 0 chr4 29431595 29431740 -126198380 + MusHAL1 LINE L1 587 731 -2623 6 809 3285 121 14 2 chr4 29431740 29432235 -126197885 + L1_Mus4 LINE L1 6129 6629 -7 6 809 917 152 81 12 chr4 29432241 29432414 -126197706 + Lx7 LINE L1 6754 6938 -758 6 809 2330 36 0 0 chr4 29432444 29432724 -126197396 - L1Md_T LINE L1 0 6582 6303 6 809 3254 38 0 0 chr4 29432724 29433117 -126197003 + L1Md_T LINE L1 5930 6322 -260 6 809 552 242 24 67 chr4 29433105 29433269 -126196851 + Lx6 LINE L1 6912 7068 -392 6 809 1066 269 58 14 chr4 29433265 29433559 -126196561 + Lx7 LINE L1 7027 7333 -363 6 809 270 81 0 0 chr4 29433568 29433605 -126196515 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 809 2557 203 71 16 chr4 29434044 29434682 -126195438 - Lx2B LINE L1 0 7000 6032 6 809 369 102 0 0 chr4 29435009 29435068 -126195052 + (TTTA)n Simple_repeat Simple_repeat 4 62 0 6 809 511 316 22 0 chr4 29435071 29435210 -126194910 - ID_B1 SINE B4 -1 223 82 6 809 434 361 5 14 chr4 29435362 29435584 -126194536 - ID_B1 SINE B4 -2 222 3 6 809 204 40 0 0 chr4 29436082 29436107 -126194013 + (TTA)n Simple_repeat Simple_repeat 2 26 0 6 809 805 297 100 107 chr4 29436265 29436856 -126193264 + RLTR18B LTR ERVK 30 616 0 6 809 276 30 0 0 chr4 29437216 29437249 -126192871 + (A)n Simple_repeat Simple_repeat 1 33 0 6 809 1339 185 137 19 chr4 29437427 29437697 -126192423 - RMER13B LTR ERVK -606 302 1 6 809 23 33 0 0 chr4 29437783 29437813 -126192307 + AT_rich Low_complexity Low_complexity 1 30 0 6 809 2661 306 76 48 chr4 29438044 29439738 -126190382 - Lx9 LINE L1 -164 7480 5739 6 809 704 209 0 6 chr4 29439738 29439911 -126190209 + (TA)n Simple_repeat Simple_repeat 2 173 0 6 809 786 294 28 20 chr4 29439911 29440161 -126189959 - Lx9 LINE L1 -151 5696 5445 6 809 2337 288 36 41 chr4 29440545 29441613 -126188507 + L1_Rod LINE L1 3199 4262 -1585 6 809 324 0 0 0 chr4 29441613 29441649 -126188471 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 809 2337 288 36 41 chr4 29441649 29441682 -126188438 + L1_Rod LINE L1 4263 4295 -1552 6 809 8139 47 1 1 chr4 29441721 29443138 -126186982 - L1Md_F2 LINE L1 -1 6581 5165 6 809 286 286 153 0 chr4 29443222 29443320 -126186800 - B1F SINE Alu -32 117 5 6 809 717 93 0 0 chr4 29444124 29444231 -126185889 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 6 809 2197 260 48 57 chr4 29444643 29445344 -126184776 + Lx9 LINE L1 6423 7117 -527 6 809 579 248 14 122 chr4 29445428 29445790 -126184330 + Lx9 LINE L1 7320 7642 -2 6 809 23 54 0 0 chr4 29446299 29446336 -126183784 + AT_rich Low_complexity Low_complexity 1 37 0 6 809 537 244 63 0 chr4 29446366 29446493 -126183627 + B1_Mur3 SINE Alu 14 148 -1 6 809 237 80 66 13 chr4 29446507 29446583 -126183537 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 809 405 0 0 0 chr4 29447131 29447176 -126182944 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 809 883 0 19 0 chr4 29448640 29448747 -126181373 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 6 809 1705 225 111 39 chr4 29448750 29449166 -126180954 + RLTR41 LTR ERV1 1 446 0 6 809 201 200 22 0 chr4 29449167 29449212 -126180908 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 809 2513 206 30 69 chr4 29449313 29449909 -126180211 - RMER20B LTR ERVK -25 602 27 6 809 2936 158 29 63 chr4 29449909 29450532 -126179588 - Lx LINE L1 0 6654 6053 6 809 2513 206 30 69 chr4 29450532 29450561 -126179559 - RMER20B LTR ERVK -601 26 1 6 809 446 277 88 114 chr4 29450568 29450841 -126179279 - MLT2C2 LTR ERVL -183 281 16 6 809 375 240 107 62 chr4 29451256 29451500 -126178620 - RMER17C LTR ERVK -71 339 85 6 809 400 214 24 0 chr4 29451505 29451631 -126178489 + G-rich Low_complexity Low_complexity 6 134 0 6 809 1109 301 68 3 chr4 29451842 29452195 -126177925 + MTEa LTR MaLR 4 379 0 6 809 381 313 151 10 chr4 29452322 29452563 -126177557 + ORR1D2 LTR MaLR 2 298 -61 6 809 297 75 0 0 chr4 29452594 29452634 -126177486 + (CAG)n Simple_repeat Simple_repeat 2 41 0 6 809 195 114 0 0 chr4 29452634 29452669 -126177451 + (CTA)n Simple_repeat Simple_repeat 3 37 0 6 809 881 283 112 53 chr4 29453138 29453736 -126176384 + L1MB8 LINE L1 5531 6163 -15 6 809 910 177 37 37 chr4 29453945 29454133 -126175987 - B2_Mm2 SINE B2 -7 188 1 6 809 189 0 0 0 chr4 29454491 29454512 -126175608 + (TAA)n Simple_repeat Simple_repeat 3 23 0 6 809 1922 172 78 18 chr4 29454520 29454917 -126175203 - MTC LTR MaLR 0 421 1 6 809 239 328 0 0 chr4 29455760 29455891 -126174229 + A-rich Low_complexity Low_complexity 1 131 0 6 809 223 343 0 15 chr4 29456175 29456243 -126173877 + ID4_ SINE ID 6 72 -11 6 809 252 59 0 0 chr4 29456251 29456285 -126173835 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 809 21 57 0 0 chr4 29456392 29456427 -126173693 + AT_rich Low_complexity Low_complexity 1 35 0 6 809 351 96 0 0 chr4 29456478 29456530 -126173590 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 809 609 61 0 0 chr4 29457576 29457658 -126172462 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 809 705 12 0 0 chr4 29457658 29457739 -126172381 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 809 3994 121 13 3 chr4 29458604 29459212 -126170908 + Lx LINE L1 6034 6647 -7 6 809 737 93 7 48 chr4 29460144 29460290 -126169830 + Lx2 LINE L1 6857 6996 -1 6 809 26 64 0 0 chr4 29460397 29460444 -126169676 + AT_rich Low_complexity Low_complexity 1 47 0 6 809 201 383 50 8 chr4 29460456 29460577 -126169543 + L4 LINE RTE 1694 1819 -210 6 809 745 314 67 43 chr4 29460832 29461294 -126168826 - MER67C LTR ERV1 -124 587 115 6 809 401 0 20 0 chr4 29461386 29461435 -126168685 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 809 2622 266 70 8 chr4 29461517 29462321 -126167799 - Lx9 LINE L1 -358 7286 6433 6 809 4424 61 2 0 chr4 29462627 29463186 -126166934 - L1Md_F2 LINE L1 0 6582 6023 6 809 1279 291 24 11 chr4 29463186 29463565 -126166555 + Lx7 LINE L1 6915 7298 -398 6 809 24 0 0 0 chr4 29463713 29463737 -126166383 + AT_rich Low_complexity Low_complexity 1 24 0 6 809 509 291 84 44 chr4 29463768 29464066 -126166054 + RMER5 LTR ERV1 74 383 -151 6 809 440 250 67 56 chr4 29464494 29464672 -126165448 + RMER5 LTR ERV1 336 515 -19 6 809 387 238 119 19 chr4 29465606 29465816 -126164304 + Lx9 LINE L1 7407 7637 -7 6 809 657 38 0 0 chr4 29465940 29466020 -126164100 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 809 276 261 114 65 chr4 29466659 29466782 -126163338 - RMER2 LTR ERV1 -4 563 435 6 809 511 236 94 30 chr4 29466850 29467073 -126163047 - RMER2 LTR ERV1 -254 313 1 6 809 345 140 0 0 chr4 29467163 29467220 -126162900 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 809 269 118 20 0 chr4 29468313 29468364 -126161756 + (TTA)n Simple_repeat Simple_repeat 3 54 0 6 809 187 109 17 52 chr4 29470332 29470390 -126159730 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 6 809 982 63 0 8 chr4 29470397 29470525 -126159595 - B1_Mus2 SINE Alu -19 128 2 6 809 258 32 0 0 chr4 29470653 29470684 -126159436 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 809 2480 72 9 3 chr4 29470702 29471038 -126159082 - RMER16 LTR ERVK -83 450 113 6 809 243 0 0 0 chr4 29471080 29471107 -126159013 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 809 7156 137 11 30 chr4 29471107 29471190 -126158930 - RMER16-int LTR ERVK -12 5394 5313 6 809 2608 92 0 3 chr4 29471190 29471550 -126158570 + Lx3_Mus LINE L1 6650 7008 -1 6 809 7156 137 11 30 chr4 29471550 29472680 -126157440 - RMER16-int LTR ERVK -94 5312 4205 6 809 216 97 0 0 chr4 29473204 29473235 -126156885 + (CAT)n Simple_repeat Simple_repeat 2 32 0 6 809 577 194 47 24 chr4 29473264 29473391 -126156729 - RMER16-int LTR ERVK -5276 130 1 6 809 780 142 0 0 chr4 29473391 29473511 -126156609 - RMER16 LTR ERVK 0 533 414 6 809 1180 148 6 0 chr4 29473693 29473876 -126156244 - B2_Mm2 SINE B2 -9 186 3 6 809 370 325 123 10 chr4 29474890 29475117 -126155003 - L1M2 LINE L1 -665 5519 5265 6 809 2210 316 65 37 chr4 29475283 29476263 -126153857 - Lx7 LINE L1 -270 7426 6419 6 809 2994 245 66 21 chr4 29476274 29477258 -126152862 + Lx7 LINE L1 4874 5893 -1803 6 809 973 273 100 29 chr4 29477258 29477537 -126152583 - RMER15 LTR ERVL 0 575 277 6 809 183 42 0 0 chr4 29477550 29477574 -126152546 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 6 809 2176 128 33 86 chr4 29477574 29477891 -126152229 - Lx3_Mus LINE L1 -22 6987 6665 6 809 189 0 0 0 chr4 29477891 29477912 -126152208 + (CTG)n Simple_repeat Simple_repeat 2 22 0 6 809 2176 128 33 86 chr4 29477912 29477937 -126152183 - Lx3_Mus LINE L1 -345 6664 6664 6 809 1074 90 7 0 chr4 29477937 29478082 -126152038 - B1_Mus2 SINE Alu 0 147 2 6 809 2176 128 33 86 chr4 29478082 29478151 -126151969 - Lx3_Mus LINE L1 -345 6664 6596 6 809 440 323 10 30 chr4 29478248 29478449 -126151671 - RMER15 LTR ERVL -341 234 38 6 809 468 134 0 0 chr4 29478453 29478550 -126151570 + (TC)n Simple_repeat Simple_repeat 2 98 0 6 809 6665 150 37 31 chr4 29478580 29479810 -126150310 - Lx3C LINE L1 0 6976 5739 6 809 1897 238 35 5 chr4 29479979 29480380 -126149740 - MTC LTR MaLR -8 413 1 6 809 4254 219 40 83 chr4 29480380 29481694 -126148426 - MTC-int LTR MaLR 0 1258 2 6 809 2329 190 7 12 chr4 29481694 29482114 -126148006 - MTC LTR MaLR 0 421 3 6 809 862 329 72 54 chr4 29482177 29482901 -126147219 + Lx8 LINE L1 6079 6815 -658 6 809 585 329 68 81 chr4 29482901 29483282 -126146838 - MTE2a LTR MaLR 0 379 4 6 809 826 290 122 24 chr4 29483285 29483614 -126146506 + Lx8 LINE L1 6811 7171 -302 6 809 255 141 47 0 chr4 29483820 29483884 -126146236 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 809 32 26 0 0 chr4 29484223 29484262 -126145858 + AT_rich Low_complexity Low_complexity 1 39 0 7 809 366 23 0 0 chr4 29484310 29484353 -126145767 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 809 22 0 0 0 chr4 29484414 29484436 -126145684 + AT_rich Low_complexity Low_complexity 1 22 0 7 809 235 349 0 68 chr4 29484795 29484912 -126145208 - MLT1E2 LTR MaLR -484 143 35 7 809 1175 309 32 15 chr4 29484985 29485454 -126144666 - Lx8 LINE L1 -331 7142 6666 7 809 336 345 11 5 chr4 29485547 29485772 -126144348 + L1M2 LINE L1 5335 5560 -737 7 809 933 280 154 13 chr4 29485782 29486100 -126144020 - MTD LTR MaLR -14 405 43 7 809 1401 305 119 108 chr4 29486130 29486538 -126143582 - MTD-int LTR MaLR 0 1258 813 7 809 183 42 0 0 chr4 29486538 29486562 -126143558 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7 809 1401 305 119 108 chr4 29486562 29487397 -126142723 - MTD-int LTR MaLR -446 812 1 7 809 277 309 100 50 chr4 29487404 29487564 -126142556 - MTD LTR MaLR -18 401 234 7 809 1413 276 30 60 chr4 29487565 29487859 -126142261 + L1_Rod LINE L1 2504 2802 -3045 7 809 225 0 0 0 chr4 29487859 29487884 -126142236 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 809 1413 276 30 60 chr4 29487884 29488317 -126141803 + L1_Rod LINE L1 2803 3208 -2639 7 809 457 234 40 0 chr4 29488365 29488489 -126141631 + MusHAL1 LINE L1 2285 2413 -299 7 809 311 194 62 31 chr4 29488510 29488606 -126141514 + L1_Rod LINE L1 4179 4277 -1570 7 809 426 39 0 0 chr4 29488672 29488724 -126141396 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 809 477 0 0 0 chr4 29489575 29489628 -126140492 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 809 26 0 0 0 chr4 29490172 29490198 -126139922 + AT_rich Low_complexity Low_complexity 1 26 0 7 809 348 24 0 0 chr4 29490398 29490439 -126139681 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 7 810 6741 49 1 1 chr4 29491281 29492113 -126138007 + L1Md_F2 LINE L1 5740 6571 -11 7 810 402 135 0 43 chr4 29492199 29492292 -126137828 + CT-rich Low_complexity Low_complexity 3 91 0 7 810 1001 135 0 0 chr4 29492307 29492455 -126137665 - B1_Mus1 SINE Alu 0 148 1 7 810 31 26 0 0 chr4 29493355 29493393 -126136727 + AT_rich Low_complexity Low_complexity 1 38 0 7 810 230 406 40 40 chr4 29493671 29494025 -126136095 - L2 LINE L2 -982 2437 2084 7 810 4395 112 9 30 chr4 29494571 29495317 -126134803 - RMER17A LTR ERVK -17 734 4 7 810 26076 46 7 6 chr4 29495445 29497623 -126132497 - L1Md_F3 LINE L1 0 6584 4403 7 810 3716 57 2 6 chr4 29497623 29498101 -126132019 + L1Md_T LINE L1 6107 6582 0 7 810 26076 60 2 1 chr4 29498101 29500000 -126130120 - L1Md_F3 LINE L1 -1481 4402 2503 7 810 9691 91 7 8 chr4 29500000 29502053 -126128067 - L1Md_A LINE L1 -3381 2502 411 1 810 254 271 16 43 chr4 29502058 29502161 -126127959 - BC1_Mm scRNA scRNA -48 104 3 2 810 233 355 115 42 chr4 29503003 29503315 -126126805 + BLACKJACK DNA AcHobo 168 502 -2442 3 810 352 250 143 48 chr4 29503421 29503610 -126126510 + BLACKJACK DNA AcHobo 910 1116 -1828 3 810 207 0 0 0 chr4 29503630 29503653 -126126467 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 810 1088 228 102 39 chr4 29503748 29504156 -126125964 - RMER1B Other Other -122 944 486 5 810 701 23 0 11 chr4 29504211 29504299 -126125821 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 810 333 0 0 0 chr4 29504299 29504335 -126125785 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 810 21 104 0 0 chr4 29506060 29506137 -126123983 + AT_rich Low_complexity Low_complexity 1 77 0 8 810 377 241 107 27 chr4 29506198 29506347 -126123773 - L1MCa LINE L1 -4517 1991 1831 9 810 2130 317 76 54 chr4 29506352 29507849 -126122271 + Lx8 LINE L1 5721 7282 -191 1 810 22 0 0 0 chr4 29507929 29507951 -126122169 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 6032 113 21 79 chr4 29507964 29509054 -126121066 + MTB-int LTR MaLR 1 1027 -71 1 810 2293 134 13 15 chr4 29509064 29509458 -126120662 - RLTR44B LTR ERVK -2 447 55 1 810 623 57 0 0 chr4 29509473 29509561 -126120559 + MTB-int LTR MaLR 1011 1098 0 1 810 2680 117 15 0 chr4 29509561 29509955 -126120165 + MTB LTR MaLR 1 400 0 1 810 207 267 0 0 chr4 29510660 29510735 -126119385 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 1 810 1409 330 18 50 chr4 29510735 29511449 -126118671 - Lx9 LINE L1 -298 7346 6656 1 810 811 276 66 43 chr4 29511456 29511850 -126118270 + L1_Rod LINE L1 5397 5799 -48 1 810 1153 286 55 6 chr4 29511854 29512083 -126118037 + Lx6 LINE L1 6518 6749 -711 1 810 1205 96 6 0 chr4 29512083 29512261 -126117859 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 1 810 1153 222 100 21 chr4 29512261 29512405 -126117715 + Lx6 LINE L1 6750 6881 -579 1 810 1091 235 112 16 chr4 29512419 29513085 -126117035 + RMER17B LTR ERVK 138 958 0 1 810 2028 255 64 30 chr4 29513086 29513619 -126116501 + Lx5 LINE L1 6497 7047 -3 2 810 374 0 22 0 chr4 29513619 29513665 -126116455 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2 810 30 0 0 0 chr4 29513765 29513795 -126116325 + AT_rich Low_complexity Low_complexity 1 30 0 2 810 270 0 0 0 chr4 29514006 29514036 -126116084 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 810 442 226 92 14 chr4 29514036 29514274 -126115846 - Lx9 LINE L1 -40 7604 7337 2 810 238 236 28 0 chr4 29514283 29514355 -126115765 - L1_Mur3 LINE L1 -527 5353 5280 2 810 942 311 68 24 chr4 29514549 29514974 -126115146 + Lx7 LINE L1 6919 7362 -334 2 810 291 28 0 0 chr4 29515021 29515057 -126115063 + (T)n Simple_repeat Simple_repeat 1 36 0 2 810 525 16 0 0 chr4 29516041 29516103 -126114017 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 810 24 0 0 0 chr4 29516267 29516291 -126113829 + AT_rich Low_complexity Low_complexity 1 24 0 2 810 384 22 0 0 chr4 29517487 29517532 -126112588 + (GAAAA)n Simple_repeat Simple_repeat 1 45 0 3 810 5449 231 76 25 chr4 29518406 29519375 -126110745 - Lx5 LINE L1 -4 7046 6027 3 810 1129 61 0 29 chr4 29519375 29519545 -126110575 - L1Md_F3 LINE L1 0 6584 6420 3 810 15824 185 140 40 chr4 29519545 29519959 -126110161 - Lx5 LINE L1 -1024 6026 5595 3 810 5692 3 0 0 chr4 29519959 29520591 -126109529 - L1Md_A LINE L1 0 6582 5951 3 810 15824 163 170 47 chr4 29520591 29520951 -126109169 - Lx5 LINE L1 -281 5596 5220 3 810 495 0 0 0 chr4 29520951 29521006 -126109114 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 810 15824 163 170 47 chr4 29521006 29523724 -126106396 - Lx5 LINE L1 -658 5219 2063 3 810 621 49 0 0 chr4 29523724 29523805 -126106315 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 810 15824 200 108 44 chr4 29523805 29525267 -126104853 - Lx5 LINE L1 -3815 2062 547 3 810 290 107 18 0 chr4 29525420 29525476 -126104644 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 810 475 144 0 20 chr4 29526807 29526906 -126103214 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 810 21 57 0 0 chr4 29527737 29527772 -126102348 + AT_rich Low_complexity Low_complexity 1 35 0 3 810 6434 145 11 8 chr4 29527898 29528957 -126101163 - Lx2 LINE L1 -2 6995 5933 3 810 393 132 9 28 chr4 29529104 29529213 -126100907 + A-rich Low_complexity Low_complexity 1 107 0 4 810 207 0 0 0 chr4 29529212 29529235 -126100885 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 810 207 98 11 109 chr4 29529230 29529322 -126100798 + A-rich Low_complexity Low_complexity 5 87 0 4 810 1734 83 22 33 chr4 29529371 29529646 -126100474 + L1_Mus3 LINE L1 6366 6637 -1 4 810 333 273 130 61 chr4 29529706 29529936 -126100184 + Lx8 LINE L1 6372 6617 -856 4 810 350 261 159 11 chr4 29530133 29530358 -126099762 + L1MC1 LINE L1 5639 5897 -2098 4 810 2010 41 51 7 chr4 29530510 29530782 -126099338 - MTA_Mm LTR MaLR 0 396 113 4 810 253 62 0 0 chr4 29530782 29530814 -126099306 + MTA_Mm LTR MaLR 1 32 -364 4 810 390 21 0 0 chr4 29530826 29530873 -126099247 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 810 941 105 12 12 chr4 29530913 29531077 -126099043 + (TA)n Simple_repeat Simple_repeat 2 165 0 4 810 851 98 8 0 chr4 29532424 29532556 -126097564 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 5 810 8239 37 1 0 chr4 29532860 29533840 -126096280 - L1Md_F3 LINE L1 -3 6581 5601 5 810 340 396 0 0 chr4 29533856 29533957 -126096163 - B1F2 SINE Alu -43 106 6 5 810 34 42 0 0 chr4 29534282 29534330 -126095790 + AT_rich Low_complexity Low_complexity 1 48 0 5 810 420 20 0 0 chr4 29534385 29534434 -126095686 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 810 454 148 0 2 chr4 29534736 29534825 -126095295 - L1MEg LINE L1 -4261 1939 1852 5 810 420 20 0 0 chr4 29534944 29534993 -126095127 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 810 203 103 0 25 chr4 29535153 29535193 -126094927 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 5 810 2907 39 6 3 chr4 29535370 29535789 -126094331 - L1Md_F3 LINE L1 0 6584 6219 5 810 231 320 47 8 chr4 29536203 29536332 -126093788 + L1MA6 LINE L1 6044 6177 -123 5 810 292 253 0 0 chr4 29536629 29536712 -126093408 + Lx9 LINE L1 7560 7642 -2 6 810 352 341 75 41 chr4 29536781 29537044 -126093076 - L1M2 LINE L1 -2400 3746 3472 6 810 314 315 76 31 chr4 29537047 29537270 -126092850 + L1_Mur2 LINE L1 4077 4309 -1571 6 810 4775 219 33 39 chr4 29537293 29537555 -126092565 + L1_Mur2 LINE L1 4552 4824 -1053 6 810 971 128 0 57 chr4 29537555 29537712 -126092408 - B1_Mus1 SINE Alu 0 148 1 6 810 4775 219 33 39 chr4 29537712 29538688 -126091432 + L1_Mur2 LINE L1 4825 5783 -94 6 810 3066 269 34 25 chr4 29538684 29539497 -126090623 + Lx5 LINE L1 6229 7049 -1 6 810 331 256 96 32 chr4 29539723 29539754 -126090366 + Lx8 LINE L1 4695 4725 -1155 6 810 209 57 0 28 chr4 29539754 29539790 -126090330 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 810 331 256 96 32 chr4 29539790 29539883 -126090237 + Lx8 LINE L1 4726 4826 -1054 6 810 3697 86 22 0 chr4 29539927 29540429 -126089691 + L1_Mus4 LINE L1 5638 6150 -486 6 810 369 294 80 33 chr4 29540806 29541108 -126089012 + L1M2 LINE L1 5304 5619 -681 6 810 431 249 40 44 chr4 29541330 29541541 -126088579 + Lx8 LINE L1 5748 5960 -1684 6 810 334 219 0 0 chr4 29541655 29541719 -126088401 - L1_Mur2 LINE L1 -374 5503 5440 6 810 542 275 49 11 chr4 29541720 29541928 -126088192 + Lx6 LINE L1 7149 7314 -146 7 810 472 362 91 14 chr4 29541928 29542214 -126087906 + MTD LTR MaLR 93 400 -19 7 810 276 30 0 0 chr4 29542467 29542500 -126087620 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 810 449 261 68 23 chr4 29543103 29543366 -126086754 - L1M2 LINE L1 -679 5621 5347 7 810 248 226 6 99 chr4 29543781 29543943 -126086177 - Lx9 LINE L1 -15 7629 7483 7 810 584 222 9 34 chr4 29544100 29544236 -126085884 + B1_Mur2 SINE Alu 4 137 -13 7 810 213 121 0 0 chr4 29544236 29544269 -126085851 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 810 183 129 0 0 chr4 29544269 29544300 -126085820 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 810 888 289 56 64 chr4 29544522 29545140 -126084980 - Lx9 LINE L1 -1685 5959 5327 7 810 356 300 136 31 chr4 29545144 29545402 -126084718 + Lx9 LINE L1 7212 7496 -148 7 810 327 299 0 0 chr4 29545501 29545608 -126084512 - L1M2 LINE L1 -686 5605 5499 7 810 24 0 0 0 chr4 29545683 29545707 -126084413 + AT_rich Low_complexity Low_complexity 1 24 0 8 810 597 119 0 0 chr4 29545745 29545846 -126084274 + (TC)n Simple_repeat Simple_repeat 2 102 0 8 810 21 36 0 0 chr4 29546023 29546051 -126084069 + AT_rich Low_complexity Low_complexity 1 28 0 8 810 3430 16 0 0 chr4 29546559 29546946 -126083174 - L1_Mm LINE L1 -27 5856 5470 8 810 5078 64 0 0 chr4 29546946 29547589 -126082531 + L1Md_T LINE L1 5939 6581 -1 8 810 205 123 96 0 chr4 29547616 29547689 -126082431 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 810 207 0 0 0 chr4 29547691 29547714 -126082406 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 810 1605 343 30 39 chr4 29548252 29549193 -126080927 - Lx7 LINE L1 -463 7233 6302 8 810 1974 237 109 25 chr4 29549214 29549716 -126080404 + Lx9 LINE L1 6940 7476 -168 8 810 252 0 0 0 chr4 29549716 29549744 -126080376 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 810 1974 237 109 25 chr4 29549744 29549891 -126080229 + Lx9 LINE L1 7477 7644 0 8 810 359 319 54 18 chr4 29549907 29550073 -126080047 - Lx7 LINE L1 -1404 6292 6121 8 810 569 237 74 31 chr4 29550098 29550355 -126079765 - Lx7 LINE L1 -1678 6018 5751 8 810 1134 318 34 7 chr4 29550358 29550773 -126079347 + Lx8 LINE L1 6685 7110 -363 9 810 6769 37 0 0 chr4 29551074 29551878 -126078242 + L1Md_T LINE L1 5777 6580 -2 9 810 561 225 231 0 chr4 29552124 29552293 -126077827 - B3 SINE B2 -8 208 1 9 810 441 0 0 0 chr4 29552657 29552706 -126077414 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 810 1041 145 0 0 chr4 29553117 29553296 -126076824 + (TC)n Simple_repeat Simple_repeat 2 180 0 9 810 189 0 0 0 chr4 29553296 29553316 -126076804 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 810 423 0 0 0 chr4 29553316 29553362 -126076758 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 810 275 272 44 0 chr4 29553450 29553564 -126076556 - Lx9 LINE L1 -6 7638 7520 9 810 300 120 0 0 chr4 29553564 29553614 -126076506 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 810 180 111 0 0 chr4 29553617 29553644 -126076476 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 810 180 0 0 0 chr4 29553678 29553698 -126076422 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 810 360 0 0 0 chr4 29553698 29553737 -126076383 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 810 358 220 33 0 chr4 29553738 29553829 -126076291 - Lx9 LINE L1 -226 7418 7325 9 810 1333 271 26 20 chr4 29553827 29554177 -126075943 + Lx9 LINE L1 6468 6819 -825 1 810 3076 179 75 33 chr4 29554179 29554843 -126075277 + RMER17B LTR ERVK 1 692 -266 1 810 4009 206 55 46 chr4 29554843 29555848 -126074272 + Lx3C LINE L1 5918 6931 -45 1 810 21 57 0 0 chr4 29556994 29557029 -126073091 + AT_rich Low_complexity Low_complexity 1 35 0 1 810 7044 248 122 35 chr4 29558168 29559130 -126070990 + Lx3A LINE L1 1073 2050 -3827 1 810 255 61 0 0 chr4 29559130 29559163 -126070957 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 810 7044 255 152 42 chr4 29559163 29559796 -126070324 + Lx3A LINE L1 2051 2714 -3163 1 810 258 81 0 0 chr4 29559796 29559833 -126070287 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 810 7044 243 147 37 chr4 29559833 29562845 -126067275 + Lx3A LINE L1 2715 6192 -858 1 810 4785 101 4 13 chr4 29562845 29563547 -126066573 + Lx3A LINE L1 6272 6967 -14 1 810 297 0 0 0 chr4 29563547 29563580 -126066540 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 810 283 261 53 66 chr4 29563911 29563927 -126066193 - CYRA11_Mm Unknown Y-chromosome -221 396 303 1 810 548 225 108 0 chr4 29563927 29564056 -126066064 + URR1B DNA MER1_type 2 144 -81 1 810 270 0 0 0 chr4 29564063 29564093 -126066027 + (T)n Simple_repeat Simple_repeat 1 30 0 1 810 983 66 73 7 chr4 29564093 29564230 -126065890 - B1_Mm SINE Alu 0 147 2 1 810 24 0 0 0 chr4 29564925 29564949 -126065171 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 917 296 108 28 chr4 29565693 29566228 -126063892 - Lx9 LINE L1 -9 7635 7058 1 810 2139 135 34 14 chr4 29566421 29566775 -126063345 - Lx2A LINE L1 0 7008 6648 1 810 2083 175 43 5 chr4 29566944 29567318 -126062802 + ORR1B1 LTR MaLR 2 389 -5 1 810 995 50 14 34 chr4 29567420 29567566 -126062554 + L1Md_F3 LINE L1 6442 6584 0 1 810 7921 42 1 2 chr4 29567853 29568814 -126061306 - L1Md_T LINE L1 0 6582 5623 1 810 462 18 0 0 chr4 29570730 29570785 -126059335 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 810 317 194 64 9 chr4 29570804 29570913 -126059207 + Lx6 LINE L1 7346 7460 0 1 810 26 64 0 0 chr4 29571670 29571717 -126058403 + AT_rich Low_complexity Low_complexity 1 47 0 1 810 822 125 20 7 chr4 29571820 29571973 -126058147 + CT-rich Low_complexity Low_complexity 3 157 0 1 810 1309 266 19 47 chr4 29573655 29574014 -126056106 + MTD LTR MaLR 10 358 -61 1 810 1488 260 17 8 chr4 29574010 29574367 -126055753 + ORR1D1 LTR MaLR 9 368 -6 1 810 280 226 0 0 chr4 29574364 29574426 -126055694 + MTD LTR MaLR 358 419 0 1 810 1260 267 139 35 chr4 29576846 29577390 -126052730 + RMER20B LTR ERVK 3 603 -24 1 810 1965 217 36 5 chr4 29577387 29577776 -126052344 - MTC LTR MaLR -10 411 11 1 810 288 77 0 0 chr4 29578526 29578565 -126051555 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 810 1244 231 112 17 chr4 29578740 29579088 -126051032 - ORR1C2 LTR MaLR -2 382 2 1 810 3511 261 105 35 chr4 29579089 29580369 -126049751 - ORR1C2-int LTR MaLR 0 1370 2 1 810 1129 192 214 54 chr4 29580371 29580702 -126049418 - ORR1C2 LTR MaLR 0 384 1 1 810 1123 130 11 0 chr4 29581583 29581760 -126048360 + B2_Mm1t SINE B2 13 191 -2 1 810 22 56 0 0 chr4 29582137 29582173 -126047947 + AT_rich Low_complexity Low_complexity 1 36 0 1 810 21 36 0 0 chr4 29582199 29582227 -126047893 + AT_rich Low_complexity Low_complexity 1 28 0 1 810 264 242 0 0 chr4 29582345 29582407 -126047713 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 810 984 88 27 7 chr4 29583638 29583786 -126046334 + L1Md_F2 LINE L1 6429 6579 -3 1 810 25 0 0 0 chr4 29583786 29583811 -126046309 + AT_rich Low_complexity Low_complexity 1 25 0 1 810 324 0 0 0 chr4 29584009 29584045 -126046075 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 810 357 145 0 0 chr4 29584046 29584108 -126046012 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 810 210 71 0 0 chr4 29585180 29585208 -126044912 + (A)n Simple_repeat Simple_repeat 1 28 0 1 810 586 302 101 26 chr4 29585746 29586052 -126044068 - Lx7 LINE L1 -329 7367 7039 1 810 562 255 118 47 chr4 29586054 29586375 -126043745 + RLTR15 LTR ERVK 1 344 -15 1 810 1028 258 64 0 chr4 29586386 29586684 -126043436 - Lx7 LINE L1 -656 7040 6724 1 810 631 236 58 49 chr4 29586708 29586931 -126043189 + Lx4B LINE L1 6707 7039 -19 1 810 261 0 0 0 chr4 29586934 29586963 -126043157 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 810 1373 249 14 34 chr4 29587064 29587505 -126042615 + L1_Mur3 LINE L1 4702 5133 -747 1 810 911 212 75 9 chr4 29587501 29587729 -126042391 - Lx2A1 LINE L1 -2 7006 6764 1 810 508 262 155 57 chr4 29587751 29588087 -126042033 + L1_Mur3 LINE L1 5182 5550 -327 1 810 22 70 0 0 chr4 29588211 29588254 -126041866 + AT_rich Low_complexity Low_complexity 1 43 0 1 810 4320 74 19 2 chr4 29589353 29589932 -126040188 - L1Md_F2 LINE L1 -12 6570 5982 1 810 833 186 152 5 chr4 29589932 29590116 -126040004 - L1Md_F LINE L1 -6073 446 236 1 810 2929 109 0 3 chr4 29590118 29590576 -126039544 - Lx LINE L1 -646 6008 5557 1 810 2365 196 84 2 chr4 29590579 29591045 -126039075 - Lx LINE L1 -132 6522 6019 1 810 496 184 9 9 chr4 29591045 29591160 -126038960 + Lx LINE L1 6537 6651 -3 1 810 4917 122 37 71 chr4 29592091 29593029 -126037091 + RMER17A2 LTR ERVK 1 906 0 1 810 306 269 34 34 chr4 29593459 29593636 -126036484 + (TATG)n Simple_repeat Simple_repeat 1 177 0 1 810 250 339 29 6 chr4 29593683 29593858 -126036262 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 810 468 0 0 0 chr4 29595342 29595394 -126034726 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 810 224 372 26 0 chr4 29595688 29595766 -126034354 + ID2 SINE ID 1 80 -3 1 810 23 0 0 0 chr4 29596408 29596431 -126033689 + AT_rich Low_complexity Low_complexity 1 23 0 1 810 369 0 0 0 chr4 29596545 29596586 -126033534 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 810 361 359 41 7 chr4 29596586 29596732 -126033388 + B3 SINE B2 33 183 -33 1 810 886 307 68 28 chr4 29596735 29597087 -126033033 + ORR1D2 LTR MaLR 3 368 -2 1 810 33 56 0 0 chr4 29597911 29597965 -126032155 + AT_rich Low_complexity Low_complexity 1 54 0 1 810 22 56 0 0 chr4 29598199 29598235 -126031885 + AT_rich Low_complexity Low_complexity 1 36 0 1 810 267 173 0 0 chr4 29598453 29598534 -126031586 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 1 810 23 33 0 0 chr4 29598604 29598634 -126031486 + AT_rich Low_complexity Low_complexity 1 30 0 1 810 8248 130 51 5 chr4 29598660 29599982 -126030138 + Lx3B LINE L1 5587 6969 -4 1 810 249 108 0 0 chr4 29599986 29600023 -126030097 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 810 288 0 0 0 chr4 29600023 29600055 -126030065 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 810 432 37 0 0 chr4 29600895 29600949 -126029171 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 810 2501 121 37 3 chr4 29601310 29601690 -126028430 + MTB_Mm LTR MaLR 4 396 -11 1 810 1270 246 123 0 chr4 29601682 29602016 -126028104 - MTC LTR MaLR -46 375 1 1 810 381 75 0 0 chr4 29602029 29602082 -126028038 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 810 315 0 0 0 chr4 29602106 29602141 -126027979 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 810 26 0 0 0 chr4 29602250 29602276 -126027844 + AT_rich Low_complexity Low_complexity 1 26 0 1 810 494 145 22 7 chr4 29603012 29603151 -126026969 + (TA)n Simple_repeat Simple_repeat 1 141 0 1 810 264 294 252 0 chr4 29604231 29604350 -126025770 - RSINE1 SINE B4 0 165 17 1 810 514 295 65 87 chr4 29605367 29605642 -126024478 + MER121 Unknown Unknown 88 356 -56 1 810 32 26 0 0 chr4 29605724 29605763 -126024357 + AT_rich Low_complexity Low_complexity 1 39 0 1 810 477 0 0 0 chr4 29606568 29606621 -126023499 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 810 189 182 0 0 chr4 29607818 29607873 -126022247 + GA-rich Low_complexity Low_complexity 2 56 0 1 810 1692 194 74 78 chr4 29607913 29608348 -126021772 - RMER15 LTR ERVL -92 483 51 1 810 284 0 0 27 chr4 29609332 29609369 -126020751 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 810 533 251 99 103 chr4 29609569 29609782 -126020338 + RodERV21-int LTR ERV1 68 279 -4712 1 810 3314 60 53 0 chr4 29609882 29610319 -126019801 - L1_Mus1 LINE L1 0 6567 6108 1 810 4384 65 0 1 chr4 29610319 29611007 -126019113 + L1_Mus1 LINE L1 5438 6124 -443 1 810 263 221 0 171 chr4 29611015 29611097 -126019023 + MYSERV6-int LTR ERVK 1696 1763 -3759 1 810 1003 246 118 54 chr4 29611579 29612007 -126018113 + MYSERV6-int LTR ERVK 8092 8202 -757 1 810 5577 69 1 4 chr4 29612007 29612739 -126017381 + L1Md_F2 LINE L1 5847 6576 -6 1 810 1003 291 71 61 chr4 29612739 29613234 -126016886 + MYSERV6-int LTR ERVK 8203 8701 -258 1 810 1036 222 61 121 chr4 29613555 29614122 -126015998 + RLTR19-int LTR ERVK 3485 3958 -2179 1 810 1683 200 22 33 chr4 29614159 29614526 -126015594 - RMER6D LTR ERVK -357 363 1 1 810 264 30 0 0 chr4 29614902 29614935 -126015185 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 810 369 162 0 0 chr4 29614958 29615026 -126015094 + GA-rich Low_complexity Low_complexity 4 71 0 1 810 985 129 6 6 chr4 29615026 29615198 -126014922 + (GGAAA)n Simple_repeat Simple_repeat 5 176 0 1 810 274 244 108 12 chr4 29615443 29615526 -126014594 + B4A SINE B4 1 91 -201 1 810 849 37 0 0 chr4 29615645 29615754 -126014366 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 810 232 351 114 0 chr4 29617282 29617396 -126012724 + L2c LINE L2 3251 3377 -10 1 810 1395 163 154 10 chr4 29617702 29618000 -126012120 - Lx3C LINE L1 0 6976 6636 1 810 189 0 0 0 chr4 29618717 29618738 -126011382 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 810 318 279 45 30 chr4 29619115 29619248 -126010872 - RMER15 LTR ERVL -440 135 1 1 810 373 228 148 0 chr4 29619348 29619448 -126010672 + MTD LTR MaLR 235 352 -69 1 810 228 111 0 0 chr4 29619450 29619486 -126010634 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 810 473 92 31 4 chr4 29619850 29619932 -126010188 + Lx4A LINE L1 5730 5830 -1228 1 810 319 180 33 0 chr4 29619932 29619993 -126010127 - L1MEg LINE L1 -4140 1944 1882 1 810 270 0 0 0 chr4 29619994 29620024 -126010096 + (T)n Simple_repeat Simple_repeat 1 30 0 1 810 1180 61 7 0 chr4 29620024 29620171 -126009949 - B1_Mus1 SINE Alu 0 148 1 1 810 949 155 43 0 chr4 29620171 29620332 -126009788 + Lx4A LINE L1 5828 5995 -1063 1 810 1310 188 53 42 chr4 29620329 29620613 -126009507 + Lx4A LINE L1 6758 7044 -14 1 810 1345 39 0 22 chr4 29620613 29620795 -126009325 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 810 571 238 32 0 chr4 29622055 29622181 -126007939 + B1_Mur2 SINE Alu 10 139 -10 2 811 788 105 0 53 chr4 29622520 29622671 -126007449 - L1Md_F2 LINE L1 0 6582 6440 2 811 26 0 0 0 chr4 29622692 29622718 -126007402 + AT_rich Low_complexity Low_complexity 1 26 0 2 811 473 338 82 51 chr4 29622948 29623285 -126006835 - Lx8 LINE L1 -5 7468 7118 2 811 210 37 0 0 chr4 29623285 29623312 -126006808 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 811 883 324 122 73 chr4 29623312 29624401 -126005719 - Lx8 LINE L1 -356 7117 5941 2 811 3053 174 59 34 chr4 29624401 29624997 -126005123 - RMER19C LTR ERVK 0 611 1 2 811 883 324 106 82 chr4 29624997 29625200 -126004920 - Lx8 LINE L1 -1533 5940 5726 2 811 21 0 0 0 chr4 29625851 29625872 -126004248 + AT_rich Low_complexity Low_complexity 1 21 0 2 811 2466 75 3 3 chr4 29626165 29626499 -126003621 - L1_Mus2 LINE L1 -1 6565 6232 2 811 297 136 22 22 chr4 29626622 29626712 -126003408 + T-rich Low_complexity Low_complexity 3 92 0 2 811 309 124 67 0 chr4 29627071 29627160 -126002960 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 2 811 378 344 110 23 chr4 29627390 29627780 -126002340 + L1M4b LINE L1 528 951 -6383 2 811 243 410 0 0 chr4 29628062 29628145 -126001975 - ID4 SINE ID 0 83 1 2 811 345 47 0 0 chr4 29628163 29628206 -126001914 + (TTAG)n Simple_repeat Simple_repeat 2 44 0 2 811 488 362 7 0 chr4 29628207 29628356 -126001764 - RSINE1 SINE B4 -10 155 6 2 811 301 102 17 17 chr4 29628823 29628883 -126001237 + (GAA)n Simple_repeat Simple_repeat 1 60 0 2 811 21 104 0 0 chr4 29628995 29629072 -126001048 + AT_rich Low_complexity Low_complexity 1 77 0 2 811 29014 6 0 0 chr4 29629133 29632435 -125997685 + L1Md_A LINE L1 2285 5586 -297 2 811 8998 3 0 0 chr4 29632435 29633431 -125996689 + L1Md_A LINE L1 5587 6582 0 2 811 334 250 118 32 chr4 29633435 29633621 -125996499 + L1M4b LINE L1 1626 1827 -5507 2 811 522 0 0 0 chr4 29633626 29633684 -125996436 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 811 258 116 0 0 chr4 29633913 29633956 -125996164 + (CAT)n Simple_repeat Simple_repeat 2 44 0 2 811 265 293 13 0 chr4 29634072 29634147 -125995973 + L1_Rod LINE L1 2262 2337 -3510 2 811 1511 274 63 67 chr4 29634282 29634883 -125995237 - Lx8 LINE L1 -540 6933 6335 2 811 276 305 78 54 chr4 29635053 29635466 -125994654 - L1MEc LINE L1 -3620 2699 2277 2 811 231 140 0 0 chr4 29635799 29635849 -125994271 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 2 811 1199 41 7 0 chr4 29635850 29635996 -125994124 - B1_Mus1 SINE Alu -1 147 1 2 811 544 348 102 27 chr4 29636070 29636674 -125993446 - L1MEc LINE L1 -4674 1741 1048 2 811 3628 143 19 14 chr4 29636691 29637310 -125992810 - Lx3B LINE L1 0 6973 6352 2 811 563 248 63 16 chr4 29637700 29637827 -125992293 - ETnERV2-int LTR ERVK -204 7202 7070 2 811 1748 164 22 0 chr4 29637828 29638139 -125991981 - Lx3B LINE L1 -618 6355 6038 2 811 702 0 0 0 chr4 29638139 29638220 -125991900 - IAPLTR1a_Mm LTR ERVK -256 81 1 2 811 55223 21 14 7 chr4 29638220 29644600 -125985520 - IAPEz-int LTR ERVK 0 6481 59 2 811 496 282 9 78 chr4 29644600 29644626 -125985494 - Lx6 LINE L1 -1412 6048 6033 2 811 2830 42 0 0 chr4 29644626 29644963 -125985157 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 811 1419 94 0 5 chr4 29644963 29645167 -125984953 - Lx3B LINE L1 -934 6039 5837 2 811 1923 154 41 0 chr4 29645170 29645513 -125984607 - Lx3B LINE L1 -357 5529 5173 2 811 549 100 130 0 chr4 29645503 29645603 -125984517 + L1_Mur1 LINE L1 4767 4879 -1007 2 811 7044 88 24 6 chr4 29645603 29646589 -125983531 + L1_Mus4 LINE L1 5633 6636 0 2 811 2233 105 0 3 chr4 29646583 29646908 -125983212 + L1_Mur1 LINE L1 4862 5185 -701 2 811 323 352 47 19 chr4 29647128 29647342 -125982778 - L1MEc LINE L1 -5649 751 532 2 811 337 362 29 0 chr4 29647836 29647941 -125982179 + RSINE1 SINE B4 8 115 -50 2 811 539 29 14 0 chr4 29647956 29648025 -125982095 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 2 811 1233 77 0 0 chr4 29648508 29648678 -125981442 + (TTCC)n Simple_repeat Simple_repeat 1 170 0 2 811 253 269 15 0 chr4 29649061 29649128 -125980992 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 811 771 144 0 0 chr4 29649815 29649954 -125980166 + (TAGG)n Simple_repeat Simple_repeat 1 139 0 2 811 434 353 36 6 chr4 29649954 29650122 -125979998 - ORR1E LTR MaLR -184 175 3 2 811 268 304 4 0 chr4 29650501 29650578 -125979542 + MTE2b LTR MaLR 36 114 -265 2 811 453 280 99 84 chr4 29650590 29650781 -125979339 - B3 SINE B2 0 195 2 2 811 431 328 96 25 chr4 29650887 29651084 -125979036 + MT2A LTR ERVL 323 533 0 2 811 831 46 0 0 chr4 29651110 29651218 -125978902 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 811 339 358 82 10 chr4 29651866 29652061 -125978059 + Tigger5 DNA MER2_type 34 242 -2164 2 811 208 320 21 0 chr4 29652173 29652270 -125977850 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 811 261 180 0 0 chr4 29652759 29652809 -125977311 - L1MC1 LINE L1 -3 6505 6456 2 811 869 264 118 39 chr4 29653064 29653623 -125976497 - L1MC1 LINE L1 -409 6099 5497 2 811 246 105 0 0 chr4 29653623 29653661 -125976459 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 811 1224 295 169 26 chr4 29653921 29654682 -125975438 - L1MC1 LINE L1 -1021 5300 4405 2 811 1370 182 202 47 chr4 29654682 29654798 -125975322 + RMER10A LTR ERVL 1 150 -292 2 811 423 0 0 0 chr4 29654798 29654845 -125975275 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 2 811 1370 182 202 47 chr4 29654845 29655109 -125975011 + RMER10A LTR ERVL 151 439 -3 2 811 1224 295 169 26 chr4 29655109 29655949 -125974171 - L1MC1 LINE L1 -1917 4404 3471 2 811 2154 276 40 29 chr4 29655944 29656827 -125973293 - L1MC1 LINE L1 -3067 3254 2363 2 811 230 268 14 0 chr4 29657263 29657334 -125972786 - L1MC1 LINE L1 -4501 2007 1936 2 811 458 220 17 6 chr4 29657631 29657809 -125972311 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 811 21 89 0 0 chr4 29659020 29659076 -125971044 + AT_rich Low_complexity Low_complexity 1 56 0 2 811 1498 242 74 13 chr4 29660245 29660639 -125969481 - MTD LTR MaLR 0 419 2 2 811 684 307 139 40 chr4 29660640 29661064 -125969056 - MTD-int LTR MaLR 0 1258 793 2 811 1492 233 123 72 chr4 29661066 29661642 -125968478 + RMER6C LTR ERVK 1 611 -79 2 811 5741 76 4 6 chr4 29661642 29662419 -125967701 + L1_Mus1 LINE L1 5793 6567 0 2 811 1492 233 123 72 chr4 29662419 29662498 -125967622 + RMER6C LTR ERVK 612 690 0 2 811 776 341 137 59 chr4 29662498 29663137 -125966983 - MTD-int LTR MaLR -632 626 1 2 811 1453 286 24 62 chr4 29663154 29663405 -125966715 - MTD LTR MaLR -14 405 171 2 811 1391 83 0 42 chr4 29663405 29663620 -125966500 + L1Md_F2 LINE L1 6377 6582 0 2 811 1453 286 24 62 chr4 29663620 29663789 -125966331 - MTD LTR MaLR -249 170 1 2 811 31 0 0 0 chr4 29665129 29665160 -125964960 + AT_rich Low_complexity Low_complexity 1 31 0 2 811 922 292 151 6 chr4 29667011 29667342 -125962778 + MTEb LTR MaLR 1 379 0 2 811 35 24 0 0 chr4 29667913 29667955 -125962165 + AT_rich Low_complexity Low_complexity 1 42 0 2 811 21 36 0 0 chr4 29668024 29668052 -125962068 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 203 298 0 0 chr4 29668228 29668275 -125961845 + polypyrimidine Low_complexity Low_complexity 4 50 0 2 811 26 88 0 0 chr4 29668491 29668559 -125961561 + AT_rich Low_complexity Low_complexity 1 68 0 2 811 198 0 0 0 chr4 29668851 29668873 -125961247 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 811 720 64 0 0 chr4 29670334 29670428 -125959692 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 811 548 165 10 0 chr4 29672506 29672609 -125957511 - Lx4A LINE L1 -655 6403 6300 2 811 23 33 0 0 chr4 29672764 29672794 -125957326 + AT_rich Low_complexity Low_complexity 1 30 0 2 811 39304 31 4 7 chr4 29672818 29679208 -125950912 - L1Md_T LINE L1 -1 6581 214 2 811 671 268 143 58 chr4 29679374 29679821 -125950299 - Lx8 LINE L1 0 7473 6989 2 811 228 67 0 0 chr4 29680301 29680331 -125949789 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 811 2322 185 44 26 chr4 29680334 29680878 -125949242 - L1_Mur3 LINE L1 -2916 2964 2411 2 811 3605 167 28 56 chr4 29680879 29681893 -125948227 - Lx4A LINE L1 -962 6096 5105 2 811 2526 194 38 7 chr4 29681892 29682429 -125947691 + Lx4A LINE L1 6103 6700 -358 2 811 233 380 25 0 chr4 29682508 29682587 -125947533 + ID4_ SINE ID 2 82 -1 2 811 227 215 63 0 chr4 29682689 29682768 -125947352 - L1M3 LINE L1 -1566 4574 4491 2 811 201 64 62 21 chr4 29682796 29682844 -125947276 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 2 811 1047 90 0 27 chr4 29682845 29682993 -125947127 - B1_Mus2 SINE Alu 0 147 4 2 811 243 0 0 0 chr4 29683116 29683143 -125946977 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2 811 5539 115 28 12 chr4 29683143 29683972 -125946148 - Lx3_Mus LINE L1 -20 6989 6148 2 811 830 308 54 33 chr4 29684013 29684403 -125945717 - Lx8 LINE L1 -927 6546 6149 2 811 1024 83 0 40 chr4 29685802 29685952 -125944168 + B1_Mm SINE Alu 2 145 -2 2 811 246 81 0 0 chr4 29685975 29686012 -125944108 + (A)n Simple_repeat Simple_repeat 1 37 0 2 811 3029 42 11 5 chr4 29686063 29686441 -125943679 + L1Md_F2 LINE L1 6202 6581 -1 2 811 23531 109 21 14 chr4 29686457 29689841 -125940279 + L1Md_F LINE L1 86 3476 -2407 2 811 297 0 0 0 chr4 29689841 29689874 -125940246 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 811 23531 85 9 14 chr4 29689874 29691048 -125939072 + L1Md_F LINE L1 3477 4655 -1228 2 811 1017 46 0 0 chr4 29691032 29691163 -125938957 + L1Md_F LINE L1 1781 1911 -3972 2 811 446 228 0 82 chr4 29691166 29691276 -125938844 + Lx6 LINE L1 7050 7150 -310 2 811 248 111 0 18 chr4 29691277 29691332 -125938788 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 811 377 236 27 20 chr4 29691332 29691479 -125938641 + Lx7 LINE L1 7400 7547 -149 2 811 1199 80 3 14 chr4 29691527 29691889 -125938231 + (GAAA)n Simple_repeat Simple_repeat 1 357 0 2 811 434 49 16 0 chr4 29692180 29692241 -125937879 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 811 28 61 0 0 chr4 29692332 29692381 -125937739 + AT_rich Low_complexity Low_complexity 1 49 0 2 811 922 111 14 0 chr4 29692677 29692821 -125937299 - B1_Mus1 SINE Alu 0 148 3 2 811 1838 182 101 73 chr4 29693249 29694107 -125936013 + RMER19B LTR ERVK 1 902 0 2 811 2200 209 54 28 chr4 29694467 29695004 -125935116 + Lx2B LINE L1 6444 6994 -6 2 811 23 0 0 0 chr4 29695004 29695027 -125935093 + AT_rich Low_complexity Low_complexity 1 23 0 2 811 237 119 0 0 chr4 29695176 29695218 -125934902 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 811 198 0 0 0 chr4 29695218 29695239 -125934881 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 811 245 91 45 0 chr4 29695309 29695353 -125934767 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 2 811 2287 314 38 75 chr4 29695393 29695963 -125934157 + Lx9 LINE L1 6412 6997 -647 2 811 1871 77 8 4 chr4 29695963 29696225 -125933895 - L1_Mus3 LINE L1 -2 6636 6374 2 811 566 103 0 0 chr4 29696227 29696314 -125933806 - L1_Mus2 LINE L1 0 6566 6480 2 811 2287 314 38 75 chr4 29696314 29697016 -125933104 + Lx9 LINE L1 6998 7641 -3 2 811 234 319 0 0 chr4 29697102 29697174 -125932946 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 2 811 352 300 58 23 chr4 29697592 29697766 -125932354 - B3A SINE B2 -16 182 3 2 811 5427 98 34 5 chr4 29698279 29699045 -125931075 - Lx3_Mus LINE L1 -5 7004 6217 3 811 416 19 19 0 chr4 29699865 29699918 -125930202 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 811 360 111 0 0 chr4 29701556 29701610 -125928510 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 3 811 357 129 62 31 chr4 29701610 29701674 -125928446 + HAL1-3A_ME LINE L1 1975 2040 -818 3 811 850 342 28 44 chr4 29701674 29702035 -125928085 - ORR1E LTR MaLR -4 355 1 3 811 315 65 0 0 chr4 29702390 29702436 -125927684 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 3 811 1192 48 0 0 chr4 29702436 29702583 -125927537 - B1_Mus1 SINE Alu 0 148 2 3 811 885 107 0 0 chr4 29702976 29703107 -125927013 + (TCC)n Simple_repeat Simple_repeat 3 133 0 3 811 458 47 31 0 chr4 29703183 29703247 -125926873 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 3 811 219 88 0 0 chr4 29703371 29703405 -125926715 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 811 2807 74 0 0 chr4 29703955 29704319 -125925801 + L1Md_F2 LINE L1 6203 6566 -16 3 811 391 250 53 18 chr4 29704375 29704546 -125925574 - Lx9 LINE L1 -2 7642 7466 3 811 1639 65 0 0 chr4 29704593 29704807 -125925313 - L1_Mus2 LINE L1 -495 6071 5858 3 811 2915 98 0 48 chr4 29704807 29705245 -125924875 + L1_Mus2 LINE L1 6150 6566 0 3 811 1758 273 70 11 chr4 29705328 29705899 -125924221 - Lx9 LINE L1 -319 7325 6721 3 811 2209 261 41 40 chr4 29705899 29706375 -125923745 - RLTR33 LTR ERVK 0 678 201 3 811 2750 184 23 0 chr4 29706375 29706890 -125923230 + Lx LINE L1 6123 6649 -5 3 811 2209 261 41 40 chr4 29706890 29707090 -125923030 - RLTR33 LTR ERVK -478 200 2 3 811 677 256 85 0 chr4 29707281 29707480 -125922640 - Lx9 LINE L1 -919 6725 6510 3 811 647 279 78 54 chr4 29707493 29708056 -125922064 - Lx9 LINE L1 -1190 6454 5972 3 811 533 246 34 14 chr4 29708058 29708206 -125921914 + Lx9 LINE L1 5825 5975 -1669 3 811 2623 301 18 37 chr4 29708349 29709348 -125920772 - Lx9 LINE L1 -204 7440 6461 3 811 203 328 195 0 chr4 29709559 29709687 -125920433 - MIRb SINE MIR -89 179 27 3 811 381 319 129 10 chr4 29710525 29710734 -125919386 - Lx8 LINE L1 -121 7352 7119 3 811 523 294 82 84 chr4 29710786 29710982 -125919138 - Lx8 LINE L1 -1088 6385 6207 3 811 537 16 0 0 chr4 29710982 29711044 -125919076 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 811 523 294 82 84 chr4 29711044 29711252 -125918868 - Lx8 LINE L1 -1267 6206 5982 3 811 259 291 60 8 chr4 29711382 29711516 -125918604 + L1M1 LINE L1 5472 5611 -680 3 811 273 89 0 0 chr4 29711518 29711563 -125918557 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 3 811 470 333 29 14 chr4 29711724 29711931 -125918189 + B3 SINE B2 1 210 -6 3 811 3498 98 0 43 chr4 29711961 29712497 -125917623 + L1_Mus2 LINE L1 6053 6565 -1 3 811 229 48 47 23 chr4 29712711 29712754 -125917366 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 811 685 109 103 108 chr4 29713403 29713588 -125916532 + B2_Mm2 SINE B2 3 186 -9 3 811 200 133 44 0 chr4 29713789 29713834 -125916286 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 811 360 0 0 0 chr4 29713838 29713878 -125916242 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 3 811 3065 77 25 14 chr4 29714651 29715088 -125915032 + L1Md_F2 LINE L1 6141 6582 0 3 811 279 0 0 0 chr4 29715640 29715671 -125914449 + (TTC)n Simple_repeat Simple_repeat 3 33 0 3 811 456 19 0 0 chr4 29715671 29715724 -125914396 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 811 270 0 0 0 chr4 29715803 29715833 -125914287 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 811 215 278 0 0 chr4 29716793 29716847 -125913273 + B3A SINE B2 7 60 -138 3 811 322 231 45 40 chr4 29716945 29717172 -125912948 + (ATATG)n Simple_repeat Simple_repeat 1 228 0 3 811 292 233 41 35 chr4 29717148 29717317 -125912803 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 3 811 295 174 68 55 chr4 29717343 29717489 -125912631 + (TATAA)n Simple_repeat Simple_repeat 1 148 0 3 811 242 328 0 0 chr4 29717593 29717660 -125912460 + ID4 SINE ID 3 69 -14 3 811 30 27 0 0 chr4 29717803 29717840 -125912280 + AT_rich Low_complexity Low_complexity 1 37 0 3 811 25 51 0 0 chr4 29717954 29717993 -125912127 + AT_rich Low_complexity Low_complexity 1 39 0 3 811 471 321 29 43 chr4 29718173 29718313 -125911807 + RSINE1 SINE B4 10 147 -18 3 811 24 32 0 0 chr4 29718350 29718381 -125911739 + AT_rich Low_complexity Low_complexity 1 31 0 3 811 31 0 0 0 chr4 29719499 29719530 -125910590 + AT_rich Low_complexity Low_complexity 1 31 0 3 811 21 0 0 0 chr4 29719554 29719575 -125910545 + AT_rich Low_complexity Low_complexity 1 21 0 3 811 26 0 0 0 chr4 29719674 29719700 -125910420 + AT_rich Low_complexity Low_complexity 1 26 0 3 811 192 77 0 0 chr4 29719870 29719896 -125910224 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 811 1379 262 14 34 chr4 29719904 29720318 -125909802 - Lx7 LINE L1 -281 7415 7010 3 811 29 60 0 0 chr4 29721229 29721279 -125908841 + AT_rich Low_complexity Low_complexity 1 50 0 3 811 233 57 29 0 chr4 29722391 29722426 -125907694 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3 811 1725 264 55 32 chr4 29722428 29722942 -125907178 + Lx9 LINE L1 905 1425 -4455 3 811 243 0 0 0 chr4 29722942 29722969 -125907151 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 811 1725 238 65 38 chr4 29722969 29723379 -125906741 + Lx9 LINE L1 1426 1847 -4033 3 811 6142 254 91 41 chr4 29723414 29726488 -125903632 + Lx9 LINE L1 3343 6611 -1033 3 811 1786 146 25 58 chr4 29726490 29726502 -125903618 + RLTR13C1 LTR ERVK 668 677 -306 3 811 4631 89 9 22 chr4 29726502 29727170 -125902950 - L1Md_F2 LINE L1 -12 6570 5912 3 811 1786 146 25 58 chr4 29727170 29727484 -125902636 + RLTR13C1 LTR ERVK 678 983 0 3 811 451 195 76 19 chr4 29727484 29727641 -125902479 + Lx9 LINE L1 7477 7642 -2 3 811 24 0 0 0 chr4 29727642 29727666 -125902454 + AT_rich Low_complexity Low_complexity 1 24 0 3 811 28 29 0 0 chr4 29727865 29727900 -125902220 + AT_rich Low_complexity Low_complexity 1 35 0 3 811 707 240 22 0 chr4 29727928 29728111 -125902009 + Lx2 LINE L1 6811 6997 0 3 811 258 185 72 24 chr4 29728625 29728708 -125901412 + (TTTG)n Simple_repeat Simple_repeat 4 90 0 3 811 525 68 0 0 chr4 29728934 29729008 -125901112 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 811 237 65 0 0 chr4 29730327 29730358 -125899762 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 811 288 77 0 0 chr4 29730864 29730903 -125899217 + (TTA)n Simple_repeat Simple_repeat 2 40 0 3 811 1358 206 56 55 chr4 29730926 29731298 -125898822 - RMER19B LTR ERVK 0 902 324 3 811 1009 270 33 12 chr4 29731317 29731561 -125898559 - Lx6 LINE L1 -147 7313 7065 3 811 862 252 40 122 chr4 29731638 29731941 -125898179 - RMER19B LTR ERVK -332 279 2 3 811 1989 311 91 38 chr4 29731944 29733149 -125896971 - Lx6 LINE L1 -54 7406 5823 3 811 197 33 33 0 chr4 29733186 29733216 -125896904 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 811 4402 184 28 6 chr4 29733219 29734067 -125896053 - Lx LINE L1 0 6654 5788 3 811 3762 196 4 106 chr4 29734085 29734255 -125895865 + L1_Mm LINE L1 4925 5095 -791 3 811 486 0 0 0 chr4 29734255 29734309 -125895811 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 811 311 232 11 89 chr4 29734314 29734404 -125895716 - MT2B LTR ERVL -351 250 168 3 811 478 158 12 0 chr4 29734324 29734406 -125895714 - B1_Mus1 SINE Alu -64 84 2 3 811 3762 196 4 106 chr4 29734406 29734433 -125895687 + L1_Mm LINE L1 5103 5121 -765 3 811 5561 75 0 3 chr4 29734433 29735167 -125894953 - L1_Mus1 LINE L1 0 6567 5836 3 811 4867 99 4 2 chr4 29735167 29735857 -125894263 + L1_Mus1 LINE L1 5120 5809 -74 3 811 4090 173 8 20 chr4 29735853 29736601 -125893519 + L1_Mm LINE L1 5082 5820 -63 3 811 2102 223 117 9 chr4 29736597 29737136 -125892984 - L1_Mur3 LINE L1 -48 5832 5236 3 811 1566 157 41 20 chr4 29737159 29737451 -125892669 - RLTR10E LTR ERVK -13 298 1 3 811 754 143 161 7 chr4 29737452 29737607 -125892513 - L1_Mur3 LINE L1 -649 5231 5053 3 811 322 347 71 46 chr4 29737705 29738055 -125892065 - L1M4c LINE L1 -1149 5233 4875 3 811 330 296 111 11 chr4 29738174 29738543 -125891577 - L1M4c LINE L1 -1654 4722 4317 3 811 382 276 65 1 chr4 29738582 29738813 -125891307 - L1_Mur3 LINE L1 -903 4944 4694 3 811 305 222 0 0 chr4 29738817 29738880 -125891240 - RMER6C LTR ERVK -3 687 625 3 811 2225 184 170 22 chr4 29738931 29739530 -125890590 + RMER6C LTR ERVK 3 690 0 3 811 30 93 0 0 chr4 29739593 29739679 -125890441 + AT_rich Low_complexity Low_complexity 1 86 0 3 811 231 306 156 25 chr4 29739779 29740094 -125890026 - L1M4c LINE L1 -2343 4039 3684 3 811 197 59 59 0 chr4 29740284 29740318 -125889802 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 3 811 1426 281 65 41 chr4 29740377 29740685 -125889435 + RLTR16 LTR ERVK 1 328 -177 3 811 6097 88 21 16 chr4 29740685 29741582 -125888538 - RLTR13D6 LTR ERVK 0 902 1 3 811 1426 281 65 41 chr4 29741582 29741766 -125888354 + RLTR16 LTR ERVK 329 505 0 3 811 468 314 128 22 chr4 29741785 29742323 -125887797 - L1M4c LINE L1 -2950 3432 2835 3 811 6051 48 0 0 chr4 29742494 29743302 -125886818 - L1Md_F2 LINE L1 0 6582 5841 3 811 260 304 102 59 chr4 29743414 29744301 -125885819 - L1M4c LINE L1 -3888 2496 1572 3 811 308 303 67 36 chr4 29744466 29744661 -125885459 - L1M4c LINE L1 -5049 1335 1135 3 811 22 35 0 0 chr4 29744808 29744837 -125885283 + AT_rich Low_complexity Low_complexity 1 29 0 3 811 1041 32 0 0 chr4 29744961 29745086 -125885034 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 3 811 4954 167 68 20 chr4 29745107 29746061 -125884059 - Lx2B LINE L1 -15 6985 5986 3 811 1403 169 4 19 chr4 29746059 29746324 -125883796 + L1_Mur1 LINE L1 4841 5101 -785 3 811 342 0 0 0 chr4 29746485 29746523 -125883597 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 811 233 250 14 29 chr4 29746525 29746595 -125883525 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 3 811 326 314 175 5 chr4 29746638 29746827 -125883293 - L1M4c LINE L1 -5799 585 365 3 811 265 241 0 25 chr4 29747065 29747146 -125882974 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 811 839 321 150 22 chr4 29747171 29747725 -125882395 - L1M4c LINE L1 -5740 644 20 3 811 226 363 96 60 chr4 29748024 29748191 -125881929 - MER20 DNA MER1_type -17 202 30 3 811 599 147 39 8 chr4 29748209 29748339 -125881781 + Lx2 LINE L1 6863 6996 -1 3 811 450 341 23 42 chr4 29749943 29750157 -125879963 + B3 SINE B2 4 213 -3 3 811 228 35 0 0 chr4 29750500 29750529 -125879591 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 811 207 100 0 0 chr4 29750652 29750682 -125879438 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 811 189 0 0 0 chr4 29750715 29750736 -125879384 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 3 811 1272 265 87 29 chr4 29751842 29752138 -125877982 - Lx9 LINE L1 -1571 6073 5729 3 811 243 0 0 0 chr4 29752138 29752165 -125877955 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 811 1272 255 77 35 chr4 29752165 29752549 -125877571 - Lx9 LINE L1 -119 5728 5335 3 811 856 279 75 78 chr4 29752604 29752659 -125877461 - ORR1D1 LTR MaLR -2 372 318 3 811 3603 146 19 5 chr4 29752659 29753243 -125876877 - Lx LINE L1 -6 6648 6057 3 101 856 279 75 78 chr4 29753243 29753357 -125876763 - ORR1D1 LTR MaLR -57 317 199 3 812 342 0 0 0 chr4 29753357 29753395 -125876725 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 812 856 279 75 78 chr4 29753395 29753597 -125876523 - ORR1D1 LTR MaLR -176 198 2 3 812 22 70 0 0 chr4 29754651 29754694 -125875426 + AT_rich Low_complexity Low_complexity 1 43 0 3 812 557 255 21 14 chr4 29758233 29758376 -125871744 + RLTR45 LTR ERVK 336 479 -3 3 812 315 0 0 0 chr4 29758378 29758413 -125871707 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 812 200 189 0 0 chr4 29758759 29758796 -125871324 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 812 24 0 0 0 chr4 29759439 29759463 -125870657 + AT_rich Low_complexity Low_complexity 1 24 0 4 812 22 0 0 0 chr4 29759623 29759645 -125870475 + AT_rich Low_complexity Low_complexity 1 22 0 4 812 525 339 19 21 chr4 29760362 29760560 -125869560 - B3A SINE B2 -14 202 2 4 812 887 234 119 40 chr4 29760637 29760989 -125869131 - Lx9 LINE L1 -2 7642 7263 4 812 1296 79 0 0 chr4 29761821 29761999 -125868121 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 812 201 0 0 114 chr4 29762000 29762044 -125868076 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 812 38585 34 2 8 chr4 29762046 29768216 -125861904 - L1Md_T LINE L1 -3 6579 449 4 812 5472 67 30 8 chr4 29768220 29768955 -125861165 - L1Md_F2 LINE L1 -11 6571 5821 4 812 25 51 0 0 chr4 29769037 29769076 -125861044 + AT_rich Low_complexity Low_complexity 1 39 0 4 812 23 78 0 0 chr4 29769217 29769268 -125860852 + AT_rich Low_complexity Low_complexity 1 51 0 4 812 44 77 0 23 chr4 29769733 29769866 -125860254 + AT_rich Low_complexity Low_complexity 1 130 0 4 812 301 302 104 75 chr4 29770161 29770401 -125859719 + B4A SINE B4 46 292 0 4 812 621 266 13 140 chr4 29770448 29770684 -125859436 + B3 SINE B2 1 206 -10 4 812 210 37 0 0 chr4 29771031 29771058 -125859062 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 4 812 205 36 103 52 chr4 29771070 29771128 -125858992 + (CAAAC)n Simple_repeat Simple_repeat 2 62 0 4 812 189 0 0 0 chr4 29771193 29771214 -125858906 + (T)n Simple_repeat Simple_repeat 1 21 0 4 812 180 0 0 0 chr4 29772382 29772402 -125857718 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 812 1743 179 29 12 chr4 29772402 29772747 -125857373 - Lx2B LINE L1 -8 6992 6642 4 812 4877 95 23 80 chr4 29772758 29773671 -125856449 + RMER17D LTR ERVK 25 885 -4 4 812 1823 165 134 0 chr4 29773679 29774036 -125856084 - Lx2B LINE L1 -356 6644 6240 4 812 532 315 15 66 chr4 29774202 29774399 -125855721 + B3 SINE B2 2 188 -28 4 812 903 263 196 0 chr4 29774538 29774854 -125855266 - MTD LTR MaLR 0 419 42 4 812 749 290 98 114 chr4 29775181 29775601 -125854519 - Lx6 LINE L1 -26 7434 7022 4 812 1052 289 43 83 chr4 29775828 29776319 -125853801 - Lx8 LINE L1 -255 7218 6748 4 812 863 139 22 0 chr4 29776322 29776459 -125853661 - ORR1A4 LTR MaLR -8 321 182 4 812 1641 331 72 51 chr4 29776470 29777922 -125852198 - Lx9 LINE L1 -249 7395 5750 4 812 213 65 0 0 chr4 29777922 29777953 -125852167 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 812 899 206 61 53 chr4 29777953 29778115 -125852005 - Lx9 LINE L1 -98 5749 5588 4 812 360 0 0 0 chr4 29778215 29778255 -125851865 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 812 24 100 0 0 chr4 29778996 29779076 -125851044 + AT_rich Low_complexity Low_complexity 1 80 0 4 812 48 67 0 0 chr4 29779124 29779214 -125850906 + AT_rich Low_complexity Low_complexity 1 90 0 4 812 269 89 22 0 chr4 29779445 29779490 -125850630 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 812 347 266 51 56 chr4 29779532 29779597 -125850523 + L1M2 LINE L1 3591 3695 -2448 4 812 423 38 0 0 chr4 29779597 29779650 -125850470 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 4 812 347 258 14 70 chr4 29779650 29779760 -125850360 + L1M2 LINE L1 3696 3801 -2342 4 812 1821 284 36 79 chr4 29779753 29780411 -125849709 + Lx9 LINE L1 6812 7454 -190 4 812 279 54 0 0 chr4 29780411 29780448 -125849672 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 812 1821 284 36 79 chr4 29780448 29780660 -125849460 + Lx9 LINE L1 7455 7644 0 4 812 403 318 40 107 chr4 29780776 29781001 -125849119 - B3 SINE B2 -5 211 2 4 812 2654 310 81 27 chr4 29781161 29782378 -125847742 - Tigger1 DNA MER2_type -1135 1283 1 4 812 1264 192 190 10 chr4 29782481 29782781 -125847339 - ORR1B1 LTR MaLR 0 394 41 4 812 1329 325 17 13 chr4 29782954 29783478 -125846642 - Lx8 LINE L1 -319 7154 6629 4 812 253 128 0 78 chr4 29783511 29783562 -125846558 - B1_Mus2 SINE Alu 0 147 101 4 812 242 279 12 48 chr4 29783576 29783659 -125846461 - Lx8 LINE L1 -864 6609 6530 4 812 678 315 40 87 chr4 29783673 29784097 -125846023 + Lx8 LINE L1 6131 6534 -939 4 812 288 333 0 79 chr4 29784365 29784479 -125845641 - PB1D10 SINE Alu 0 117 13 4 812 21 36 0 0 chr4 29786140 29786168 -125843952 + AT_rich Low_complexity Low_complexity 1 28 0 4 812 29 70 0 0 chr4 29786495 29786552 -125843568 + AT_rich Low_complexity Low_complexity 1 57 0 4 812 2650 150 6 45 chr4 29786747 29787241 -125842879 - Lx3A LINE L1 -12 6969 6495 4 812 794 195 19 0 chr4 29787278 29787437 -125842683 + URR1A DNA MER1_type 65 226 0 4 812 363 340 73 12 chr4 29787459 29787623 -125842497 - MER58C DNA MER1_type -16 199 26 4 812 360 0 0 0 chr4 29788712 29788752 -125841368 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 812 579 194 4 194 chr4 29788852 29789089 -125841031 - Lx2A LINE L1 -4 6996 6802 4 812 302 329 46 13 chr4 29789351 29789502 -125840618 - L1MD LINE L1 -664 5578 5423 4 812 5115 87 3 0 chr4 29789731 29790413 -125839707 + L1_Mus2 LINE L1 5883 6566 0 4 812 1383 232 10 83 chr4 29790628 29791013 -125839107 + ORR1C1 LTR MaLR 14 370 -8 4 812 7476 73 10 7 chr4 29791064 29792069 -125838051 - L1_Mus1 LINE L1 0 6567 5587 4 812 482 81 0 0 chr4 29792075 29792137 -125837983 + L1_Mur1 LINE L1 5483 5544 -342 4 812 2676 222 34 5 chr4 29792137 29792729 -125837391 + ORR1C1-int LTR MaLR 1 609 -900 4 812 473 297 54 0 chr4 29792735 29792846 -125837274 + B1_Mur3 SINE Alu 2 118 -31 4 812 1599 224 18 100 chr4 29792946 29793517 -125836603 - L1_Mur3 LINE L1 -649 5231 4708 4 812 1401 142 169 109 chr4 29793521 29793852 -125836268 - ORR1B2 LTR MaLR -8 359 9 4 812 2485 186 75 37 chr4 29793885 29794355 -125835765 - L1_Mur3 LINE L1 -1202 4678 4186 4 812 1018 88 0 7 chr4 29794355 29794492 -125835628 - B1_Mus1 SINE Alu -12 136 1 4 812 2485 186 75 37 chr4 29794492 29794622 -125835498 - L1_Mur3 LINE L1 -1695 4185 4055 4 812 22 0 0 0 chr4 29794980 29795002 -125835118 + AT_rich Low_complexity Low_complexity 1 22 0 4 812 33023 109 24 16 chr4 29795117 29801437 -125828683 - L1Md_F2 LINE L1 -2 6580 217 4 812 216 0 0 0 chr4 29801437 29801461 -125828659 + (T)n Simple_repeat Simple_repeat 1 24 0 4 812 1422 209 18 14 chr4 29801461 29801922 -125828198 - L1_Mur3 LINE L1 -2437 3449 3014 4 812 257 328 96 7 chr4 29801974 29802308 -125827812 - L1MA6 LINE L1 0 6300 5924 4 812 22 80 0 0 chr4 29802322 29802372 -125827748 + AT_rich Low_complexity Low_complexity 1 50 0 4 812 388 200 0 16 chr4 29802486 29802608 -125827512 + (CA)n Simple_repeat Simple_repeat 2 121 0 4 812 246 277 15 0 chr4 29802712 29802777 -125827343 + CT-rich Low_complexity Low_complexity 4 69 0 4 812 4393 72 35 10 chr4 29802777 29803382 -125826738 - L1Md_F2 LINE L1 0 6582 5963 4 812 1057 300 51 24 chr4 29803453 29803788 -125826332 - Lx6 LINE L1 -100 7360 7017 4 812 1452 68 0 0 chr4 29804112 29804304 -125825816 + L1_Mus1 LINE L1 6374 6565 -2 4 812 6471 96 9 18 chr4 29804403 29805437 -125824683 - Lx3_Mus LINE L1 -1031 5978 4952 4 812 6930 106 19 8 chr4 29805437 29806469 -125823651 + Lx3_Mus LINE L1 5966 7009 0 4 812 1760 264 117 25 chr4 29807268 29807816 -125822304 + RMER19B LTR ERVK 305 902 0 4 812 286 354 66 51 chr4 29807829 29807966 -125822154 + B4A SINE B4 154 292 0 4 812 29 90 0 0 chr4 29808005 29808083 -125822037 + AT_rich Low_complexity Low_complexity 1 78 0 4 812 228 111 0 0 chr4 29808706 29808742 -125821378 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 812 293 253 21 0 chr4 29808798 29808893 -125821227 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 812 329 58 43 14 chr4 29809248 29809318 -125820802 + (TTTTTG)n Simple_repeat Simple_repeat 1 72 0 4 812 207 0 0 0 chr4 29809696 29809719 -125820401 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 812 299 245 136 17 chr4 29810288 29810445 -125819675 - MLT1A0 LTR MaLR -70 304 121 4 812 30 59 0 0 chr4 29810724 29810775 -125819345 + AT_rich Low_complexity Low_complexity 1 51 0 4 812 245 366 50 0 chr4 29811164 29811265 -125818855 - MLT1G1 LTR MaLR -5 574 469 4 812 32060 92 10 5 chr4 29811477 29816520 -125813600 - L1Md_F2 LINE L1 -21 6561 1485 4 812 2332 61 19 9 chr4 29816520 29816835 -125813285 - L1Md_F3 LINE L1 -2 6582 6265 4 812 32060 105 7 21 chr4 29816835 29817755 -125812365 - L1Md_F2 LINE L1 -4399 1484 584 4 812 279 0 0 0 chr4 29817968 29817999 -125812121 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 812 1047 94 0 0 chr4 29818369 29818540 -125811580 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 4 812 216 193 34 11 chr4 29819421 29819510 -125810610 + CT-rich Low_complexity Low_complexity 3 93 0 4 812 728 216 85 69 chr4 29820042 29820231 -125809889 + B3 SINE B2 1 192 -3 4 812 267 242 65 0 chr4 29821025 29821087 -125809033 + MTC LTR MaLR 5 70 -351 4 812 249 300 35 43 chr4 29821109 29821175 -125808945 - MTE2a LTR MaLR -1 378 314 4 812 1046 218 5 23 chr4 29821175 29821396 -125808724 + RMER20B LTR ERVK 1 217 -410 4 812 1208 56 6 0 chr4 29821416 29821594 -125808526 - MusHAL1 LINE L1 -19 2693 2515 4 812 1777 173 123 16 chr4 29821622 29822004 -125808116 + RMER20B LTR ERVK 205 627 0 4 812 1289 306 17 3 chr4 29822004 29822354 -125807766 - MTD LTR MaLR -64 355 1 4 812 21 0 0 0 chr4 29822573 29822594 -125807526 + AT_rich Low_complexity Low_complexity 1 21 0 4 812 978 261 44 22 chr4 29823947 29824321 -125805799 - MTD LTR MaLR -2 417 9 4 812 25 0 0 0 chr4 29826772 29826797 -125803323 + AT_rich Low_complexity Low_complexity 1 25 0 4 812 1185 46 0 0 chr4 29826851 29827002 -125803118 - L1_Mus1 LINE L1 -1 6566 6416 4 812 1183 238 182 6 chr4 29827087 29827417 -125802703 - Lx5 LINE L1 -408 6642 6255 4 812 2571 198 63 3 chr4 29827417 29828063 -125802057 + Lx5 LINE L1 5548 6255 -795 4 812 619 171 137 3 chr4 29828088 29828287 -125801833 + RMER6D LTR ERVK 504 720 0 4 812 736 219 36 10 chr4 29828299 29828493 -125801627 + Lx6 LINE L1 7262 7460 0 4 812 1075 296 41 56 chr4 29828557 29829025 -125801095 - RMER6B LTR ERVK 0 461 1 4 812 3955 203 114 44 chr4 29829025 29830044 -125800076 - MTC-int LTR MaLR -167 1091 2 4 812 258 151 75 0 chr4 29830047 29830100 -125800020 - MTC LTR MaLR -4 417 361 4 812 1609 140 106 50 chr4 29830100 29830401 -125799719 + ORR1A3 LTR MaLR 1 318 -8 4 812 1065 246 57 0 chr4 29830405 29830633 -125799487 - MTC LTR MaLR -56 365 125 4 812 1194 271 97 78 chr4 29830631 29831095 -125799025 + MTC-int LTR MaLR 326 798 -460 5 812 586 296 16 27 chr4 29831077 29831261 -125798859 - MTD LTR MaLR -190 184 3 4 812 2485 239 19 97 chr4 29831263 29831589 -125798531 - MTD-int LTR MaLR 0 1370 1052 4 812 2077 196 24 7 chr4 29831589 29832001 -125798119 - MTC LTR MaLR -2 419 1 5 812 2485 239 19 97 chr4 29832001 29832407 -125797713 - MTD-int LTR MaLR -319 1051 695 4 812 1762 164 7 0 chr4 29832407 29832717 -125797403 - L1_Mur2 LINE L1 -533 5344 5033 5 812 1120 55 0 20 chr4 29832793 29832942 -125797178 + B1_Mm SINE Alu 2 147 0 5 812 395 20 88 29 chr4 29832942 29833044 -125797076 + (CAAAA)n Simple_repeat Simple_repeat 3 110 0 5 812 736 321 103 24 chr4 29833072 29833197 -125796923 - ORR1D1 LTR MaLR -60 314 178 5 812 467 46 0 30 chr4 29833197 29833264 -125796856 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 5 812 987 132 0 0 chr4 29833271 29833445 -125796675 + (GA)n Simple_repeat Simple_repeat 2 175 0 5 812 736 321 103 24 chr4 29833445 29833601 -125796519 - ORR1D1 LTR MaLR -211 163 4 5 812 222 37 0 0 chr4 29833768 29833795 -125796325 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 812 1354 257 39 26 chr4 29834499 29835502 -125794618 + Lx9 LINE L1 5492 6675 -969 5 812 7137 111 17 8 chr4 29835512 29836730 -125793390 - L1_Mus3 LINE L1 0 6638 5405 5 812 580 267 0 0 chr4 29836733 29836864 -125793256 + Lx9 LINE L1 6671 6801 -843 5 812 2625 191 27 18 chr4 29836879 29837438 -125792682 - RLTR12A LTR ERVK -4 564 1 5 812 2906 249 64 48 chr4 29837439 29838745 -125791375 - MYSERV6-int LTR ERVK -54 8905 7813 5 812 339 262 39 10 chr4 29838747 29838851 -125791269 - RMER4A LTR ERVK -62 404 298 5 812 621 220 8 0 chr4 29838877 29838995 -125791125 - MYSERV-int LTR ERVK -394 5386 5268 5 812 760 256 0 52 chr4 29839005 29839215 -125790905 - MYSERV16_I-int LTR ERVK -1628 698 500 5 812 195 85 20 41 chr4 29839283 29839332 -125790788 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 812 1185 55 0 7 chr4 29839332 29839480 -125790640 - B1_Mus1 SINE Alu -1 147 1 5 812 1119 258 38 29 chr4 29839609 29839952 -125790168 - MYSERV-int LTR ERVK -1923 4627 4282 5 812 1181 252 59 27 chr4 29840044 29840341 -125789779 - MYSERV6-int LTR ERVK -7328 1631 1322 5 812 212 0 36 0 chr4 29840341 29840369 -125789751 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 812 1181 252 59 27 chr4 29840369 29840475 -125789645 - MYSERV6-int LTR ERVK -7638 1321 1216 5 812 407 310 42 7 chr4 29840508 29840651 -125789469 - MYSERV6-int LTR ERVK -6234 316 169 5 812 351 113 0 0 chr4 29840736 29840789 -125789331 + (T)n Simple_repeat Simple_repeat 1 53 0 5 812 1052 82 14 0 chr4 29840789 29840935 -125789185 - B1_Mus1 SINE Alu 0 148 1 5 812 666 0 0 0 chr4 29842074 29842148 -125787972 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 5 812 207 145 0 52 chr4 29842171 29842229 -125787891 + CT-rich Low_complexity Low_complexity 1 55 0 5 812 2897 184 38 23 chr4 29842342 29842898 -125787222 - RLTR12A LTR ERVK -4 564 1 5 812 234 191 121 45 chr4 29842898 29843030 -125787090 + Lx9 LINE L1 7502 7643 -1 5 812 2123 199 121 106 chr4 29843976 29844572 -125785548 - RMER19C LTR ERVK -6 605 1 5 812 516 105 0 0 chr4 29847001 29847077 -125783043 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 5 812 360 77 0 0 chr4 29848376 29848428 -125781692 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 812 1596 44 5 0 chr4 29849820 29850024 -125780096 + L1Md_F3 LINE L1 6379 6583 -1 5 812 21 0 0 0 chr4 29850797 29850818 -125779302 + AT_rich Low_complexity Low_complexity 1 21 0 5 812 41 21 0 0 chr4 29851041 29851089 -125779031 + AT_rich Low_complexity Low_complexity 1 48 0 5 812 558 251 278 31 chr4 29851451 29851605 -125778515 + Lx7 LINE L1 7137 7293 -403 5 812 552 15 0 0 chr4 29851605 29851670 -125778450 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 812 558 251 278 31 chr4 29851670 29851964 -125778156 + Lx7 LINE L1 7294 7696 0 5 812 21 36 0 0 chr4 29853557 29853585 -125776535 + AT_rich Low_complexity Low_complexity 1 28 0 5 812 1204 204 90 36 chr4 29853585 29853941 -125776179 - Lx9 LINE L1 -2 7642 7268 5 812 715 265 61 0 chr4 29853982 29854163 -125775957 + Lx9 LINE L1 7087 7278 -366 5 812 397 330 62 7 chr4 29855079 29855256 -125774864 + B3 SINE B2 1 190 -8 5 812 452 291 60 0 chr4 29855256 29855373 -125774747 + B1_Mur1 SINE Alu 24 147 -2 5 812 22 0 0 0 chr4 29855723 29855745 -125774375 + AT_rich Low_complexity Low_complexity 1 22 0 5 812 23 0 0 0 chr4 29855980 29856003 -125774117 + AT_rich Low_complexity Low_complexity 1 23 0 5 812 543 69 0 0 chr4 29856100 29856172 -125773948 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 812 2583 89 0 6 chr4 29857268 29857629 -125772491 + L1_Mus4 LINE L1 6271 6629 -7 5 812 189 74 0 0 chr4 29858342 29858369 -125771751 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 812 405 0 0 0 chr4 29858814 29858859 -125771261 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 812 2514 44 0 19 chr4 29859342 29859654 -125770466 + L1_Mm LINE L1 5279 5586 -297 5 812 8021 54 1 2 chr4 29859654 29860651 -125769469 + L1Md_F2 LINE L1 5587 6582 0 5 812 4496 54 3 2 chr4 29860651 29861227 -125768893 + L1Md_F2 LINE L1 6005 6581 -1 5 812 205 211 0 0 chr4 29861690 29861728 -125768392 + T-rich Low_complexity Low_complexity 1 38 0 5 812 2422 122 14 0 chr4 29861730 29862098 -125768022 - L1_Mus1 LINE L1 -4 6563 6191 5 812 411 21 0 0 chr4 29862155 29862203 -125767917 + (TTA)n Simple_repeat Simple_repeat 3 50 0 5 812 988 116 7 0 chr4 29862205 29862343 -125767777 - B1_Mus2 SINE Alu -6 141 3 5 812 1076 225 234 69 chr4 29862553 29863258 -125766862 - RMER6C LTR ERVK -4 716 1 5 812 538 243 160 11 chr4 29863820 29863995 -125766125 + ORR1C1 LTR MaLR 161 361 -17 5 812 459 35 0 0 chr4 29864008 29864065 -125766055 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 812 3695 32 0 0 chr4 29864144 29864579 -125765541 - L1Md_T LINE L1 -4 6578 6144 5 812 1381 35 0 0 chr4 29864579 29864750 -125765370 + L1_Mm LINE L1 2470 2640 -3243 5 812 254 95 24 0 chr4 29865575 29865617 -125764503 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 812 29 28 0 0 chr4 29865665 29865701 -125764419 + AT_rich Low_complexity Low_complexity 1 36 0 5 812 1807 44 4 0 chr4 29865912 29866138 -125763982 + L1Md_A LINE L1 6356 6582 0 5 812 188 135 0 26 chr4 29866162 29866200 -125763920 + CT-rich Low_complexity Low_complexity 1 37 0 5 812 441 0 0 0 chr4 29866975 29867024 -125763096 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 812 21 0 0 0 chr4 29867322 29867343 -125762777 + AT_rich Low_complexity Low_complexity 1 21 0 5 812 628 249 48 48 chr4 29868092 29868316 -125761804 + L1_Mur3 LINE L1 887 1114 -6614 5 812 483 33 0 0 chr4 29868316 29868377 -125761743 + (CCA)n Simple_repeat Simple_repeat 2 62 0 5 812 628 249 48 48 chr4 29868377 29868446 -125761674 + L1_Mur3 LINE L1 1115 1184 -6544 5 812 1062 83 0 40 chr4 29868446 29868597 -125761523 + B1_Mus1 SINE Alu 2 146 -2 5 812 628 253 65 59 chr4 29868597 29868764 -125761356 + L1_Mur3 LINE L1 1119 1291 -5795 5 812 359 196 78 39 chr4 29868764 29868885 -125761235 - RLTR25B LTR ERVK 0 1103 924 5 812 459 237 22 237 chr4 29868879 29869029 -125761091 - RLTR25B LTR ERVK -262 766 621 5 812 524 132 0 0 chr4 29869029 29869112 -125761008 - ORR1A3-int LTR MaLR -1043 920 838 5 812 459 237 22 237 chr4 29869112 29869293 -125760827 - RLTR25B LTR ERVK -262 620 442 5 812 1024 191 81 0 chr4 29869235 29869445 -125760675 - MT2B LTR ERVL -343 258 32 5 812 614 200 174 133 chr4 29869256 29869550 -125760570 - ORR1A3-int LTR MaLR -1157 806 501 5 812 477 218 15 75 chr4 29869469 29869603 -125760517 - RLTR25B LTR ERVK -580 523 398 5 812 1181 228 8 27 chr4 29869587 29869844 -125760276 - RLTR25B LTR ERVK -764 264 13 5 812 304 170 0 0 chr4 29869845 29869920 -125760200 - L1_Mur1 LINE L1 -4113 1773 1699 5 812 22 0 0 0 chr4 29869920 29869942 -125760178 + AT_rich Low_complexity Low_complexity 1 22 0 5 812 5110 226 44 46 chr4 29870047 29870535 -125759585 + L1_Mur3 LINE L1 1783 2233 -3647 5 812 189 0 0 0 chr4 29870535 29870556 -125759564 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 812 5110 226 44 46 chr4 29870556 29871624 -125758496 + L1_Mur3 LINE L1 2234 3337 -2543 5 812 4526 142 22 13 chr4 29871599 29871635 -125758485 - L1_Mm LINE L1 -118 5765 5735 5 812 3471 55 24 17 chr4 29871635 29872100 -125758020 - L1Md_F2 LINE L1 0 6582 6115 5 812 4526 142 22 13 chr4 29872100 29872846 -125757274 - L1_Mus3 LINE L1 -149 5734 4976 5 812 2733 114 221 0 chr4 29872845 29873275 -125756845 + L1_Mus3 LINE L1 5758 6282 -284 5 812 5201 203 75 67 chr4 29873275 29874839 -125755281 - RMER3D-int LTR ERVK -250 2592 1015 5 812 415 210 28 62 chr4 29874861 29875039 -125755081 - RMER3D-int LTR ERVK -1991 851 680 5 812 1063 234 93 78 chr4 29875048 29875720 -125754400 - RMER3D-int LTR ERVK -1692 1150 5 5 812 602 220 42 0 chr4 29875724 29875842 -125754278 - RLTR31A_Mm LTR ERVK 0 557 435 5 812 1459 117 61 0 chr4 29875891 29876121 -125753999 - RLTR31A_Mm LTR ERVK -340 244 1 5 812 936 212 60 56 chr4 29876122 29876372 -125753748 + L1_Mur3 LINE L1 4675 4925 -955 5 812 2947 121 24 0 chr4 29876407 29876860 -125753260 - L1_Mus4 LINE L1 -6 6630 6167 5 812 23 54 0 0 chr4 29877964 29878001 -125752119 + AT_rich Low_complexity Low_complexity 1 37 0 5 812 22 0 0 0 chr4 29878326 29878348 -125751772 + AT_rich Low_complexity Low_complexity 1 22 0 5 812 4149 138 0 3 chr4 29878441 29879079 -125751041 + Lx2 LINE L1 6357 6992 -5 5 812 857 119 18 5 chr4 29879186 29879411 -125750709 + (TA)n Simple_repeat Simple_repeat 1 228 0 5 812 4493 46 2 11 chr4 29879556 29880125 -125749995 + L1Md_F2 LINE L1 6019 6582 0 5 812 1423 177 7 35 chr4 29880124 29880411 -125749709 + Lx3A LINE L1 6697 6975 -6 5 812 632 309 66 50 chr4 29880455 29880775 -125749345 - Lx8 LINE L1 -377 7096 6772 5 812 1729 137 18 71 chr4 29880777 29881116 -125749004 - ORR1A4 LTR MaLR 0 329 9 5 812 685 340 98 5 chr4 29881124 29881491 -125748629 - Lx8 LINE L1 -699 6774 6374 5 812 1060 292 59 22 chr4 29881514 29882133 -125747987 - Lx8 LINE L1 -1664 5980 5358 5 812 301 284 69 28 chr4 29882353 29882498 -125747622 - L1_Mur3 LINE L1 -4030 1850 1700 5 812 219 180 20 0 chr4 29882578 29882628 -125747492 + T-rich Low_complexity Low_complexity 4 54 0 5 101 21279 76 7 3 chr4 29882655 29886330 -125743790 - L1Md_F2 LINE L1 -2 6580 2890 5 813 22 0 0 0 chr4 29886497 29886519 -125743601 + AT_rich Low_complexity Low_complexity 1 22 0 5 813 657 279 33 9 chr4 29886856 29887066 -125743054 - B3 SINE B2 0 216 2 5 813 362 143 97 97 chr4 29889065 29889220 -125740900 - Lx9 LINE L1 0 7644 7490 5 813 753 195 1 13 chr4 29889260 29889424 -125740696 - L1_Mus3 LINE L1 -20 6980 6837 5 813 7089 103 13 30 chr4 29889480 29890767 -125739353 - L1_Mus3 LINE L1 -1 6637 5362 5 813 258 32 0 0 chr4 29890840 29890871 -125739249 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 5 813 495 128 0 0 chr4 29890871 29890949 -125739171 - B1_Mus1 SINE Alu -70 78 1 5 813 291 244 0 35 chr4 29890881 29890966 -125739154 - B4 SINE B4 -140 152 71 5 813 299 284 115 10 chr4 29891012 29891108 -125739012 + Lx9 LINE L1 7097 7202 -442 5 813 7804 62 3 1 chr4 29891186 29892200 -125737920 + L1_Mus1 LINE L1 5550 6567 0 5 813 391 288 33 17 chr4 29892766 29892886 -125737234 - RMER15 LTR ERVL -118 457 336 5 813 24 32 0 0 chr4 29892997 29893028 -125737092 + AT_rich Low_complexity Low_complexity 1 31 0 5 813 399 315 54 30 chr4 29893068 29893271 -125736849 + B3 SINE B2 1 208 -8 5 813 577 157 0 69 chr4 29894589 29894719 -125735401 + Lx LINE L1 6531 6651 -3 5 813 1014 47 0 0 chr4 29896215 29896343 -125733777 + (TTC)n Simple_repeat Simple_repeat 2 129 0 6 813 25 51 0 0 chr4 29896502 29896541 -125733579 + AT_rich Low_complexity Low_complexity 1 39 0 6 813 653 256 119 5 chr4 29896916 29897101 -125733019 - B3 SINE B2 -8 208 3 6 813 22 35 0 0 chr4 29897958 29897987 -125732133 + AT_rich Low_complexity Low_complexity 1 29 0 6 813 207 268 27 27 chr4 29898294 29898367 -125731753 + L2 LINE L2 341 413 -3006 6 813 30 59 0 0 chr4 29898783 29898834 -125731286 + AT_rich Low_complexity Low_complexity 1 51 0 6 813 390 325 52 49 chr4 29899681 29900293 -125729827 + L1MA4 LINE L1 1303 1921 -3959 6 813 256 295 118 55 chr4 29900483 29900555 -125729565 + L1MA4 LINE L1 4075 4154 -1726 6 813 261 0 0 0 chr4 29900555 29900584 -125729536 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 813 301 294 102 48 chr4 29900584 29900916 -125729204 + L1MA4 LINE L1 4155 4535 -1608 6 813 243 182 39 0 chr4 29900974 29901051 -125729069 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 813 2657 276 89 12 chr4 29901138 29901962 -125728158 + Lx6 LINE L1 6397 7283 -177 6 813 22 35 0 0 chr4 29902068 29902097 -125728023 + AT_rich Low_complexity Low_complexity 1 29 0 6 813 441 311 70 23 chr4 29902120 29902434 -125727686 + L1MA4 LINE L1 4614 4953 -1190 6 813 443 317 96 14 chr4 29902437 29902645 -125727475 + B4A SINE B4 3 227 -65 6 813 951 0 25 0 chr4 29902645 29902764 -125727356 + (TC)n Simple_repeat Simple_repeat 1 122 0 6 813 324 328 140 14 chr4 29902764 29903044 -125727076 + L1MA4 LINE L1 4917 5214 -666 6 813 405 0 0 0 chr4 29903044 29903089 -125727031 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 813 688 304 112 17 chr4 29903089 29903583 -125726537 + L1MA4 LINE L1 5215 5829 -471 6 813 801 42 0 0 chr4 29903579 29903674 -125726446 - L1Md_F3 LINE L1 -221 6363 6269 6 813 1435 47 0 10 chr4 29903678 29903873 -125726247 + L1Md_F3 LINE L1 6391 6583 -1 6 813 467 325 136 3 chr4 29904309 29904655 -125725465 - L1MB1 LINE L1 -12 6156 5765 6 813 334 236 117 11 chr4 29904953 29905047 -125725073 + PB1D9 SINE Alu 3 106 -14 6 813 243 61 0 0 chr4 29905065 29905098 -125725022 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 6 813 813 304 84 32 chr4 29905379 29906004 -125724116 - L1MA6 LINE L1 0 6300 5648 6 813 28 61 0 0 chr4 29906430 29906479 -125723641 + AT_rich Low_complexity Low_complexity 1 49 0 6 813 60 37 0 0 chr4 29906710 29906791 -125723329 + AT_rich Low_complexity Low_complexity 1 81 0 6 813 1230 289 66 6 chr4 29907045 29907135 -125722985 + MTD LTR MaLR 18 118 -301 6 813 437 0 19 0 chr4 29907135 29907188 -125722932 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 813 1230 289 66 6 chr4 29907188 29907459 -125722661 + MTD LTR MaLR 119 400 -19 6 813 849 332 72 3 chr4 29908460 29908750 -125721370 - MTE2b LTR MaLR -59 320 11 6 813 23 0 0 0 chr4 29909125 29909148 -125720972 + AT_rich Low_complexity Low_complexity 1 23 0 6 813 1218 35 0 0 chr4 29909902 29910049 -125720071 + L1_Mm LINE L1 5441 5589 -297 6 813 7736 59 3 4 chr4 29910049 29911043 -125719077 + L1Md_F2 LINE L1 5588 6580 -2 6 813 970 146 23 12 chr4 29911043 29911068 -125719052 + L1_Mm LINE L1 5590 5618 -268 6 813 26 50 0 0 chr4 29911363 29911403 -125718717 + AT_rich Low_complexity Low_complexity 1 40 0 6 813 293 346 37 31 chr4 29911888 29912049 -125718071 - Tigger7 DNA MER2_type -1 2490 2329 6 813 449 227 127 0 chr4 29912447 29912557 -125717563 + Lx9 LINE L1 7203 7326 -318 6 813 2027 304 117 24 chr4 29912576 29913503 -125716617 + Lx6 LINE L1 6229 7460 0 6 813 621 201 77 0 chr4 29913501 29913651 -125716469 + Lx9 LINE L1 7315 7477 -167 6 813 684 119 0 0 chr4 29913651 29913760 -125716360 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 813 621 201 77 0 chr4 29913760 29913778 -125716342 + Lx9 LINE L1 7478 7495 -149 6 813 342 268 12 0 chr4 29913788 29913870 -125716250 - Lx6 LINE L1 -712 6748 6666 6 813 414 0 0 0 chr4 29913879 29913925 -125716195 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 813 459 245 7 26 chr4 29913970 29914121 -125715999 + Lx9 LINE L1 7481 7628 -16 6 813 432 0 0 0 chr4 29914778 29914826 -125715294 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 813 329 378 0 8 chr4 29916295 29916415 -125713705 + B1F SINE Alu 16 134 -15 6 813 208 137 39 64 chr4 29916427 29916505 -125713615 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 813 4405 239 104 18 chr4 29916697 29918019 -125712101 - Lx4B LINE L1 0 7058 5624 6 813 904 107 79 58 chr4 29918017 29918206 -125711914 - L1_Mur2 LINE L1 -909 4968 4776 6 813 2275 191 39 148 chr4 29918307 29918804 -125711316 - L1_Mur2 LINE L1 -2548 3329 2865 6 813 4121 13 0 0 chr4 29918804 29919273 -125710847 - L1Md_A LINE L1 0 6582 6114 6 813 2275 191 39 148 chr4 29919273 29919524 -125710596 - L1_Mur2 LINE L1 -3013 2864 2663 6 813 390 42 0 0 chr4 29920132 29920180 -125709940 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 813 223 192 13 40 chr4 29920214 29920235 -125709885 + A-rich Low_complexity Low_complexity 2 22 0 6 813 4697 109 6 1 chr4 29920235 29920986 -125709134 + L1_Mus4 LINE L1 5937 6636 0 6 813 22 0 0 0 chr4 29921032 29921054 -125709066 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 2440 50 0 0 chr4 29921054 29921356 -125708764 - L1_Mus1 LINE L1 0 6567 6266 6 813 3331 65 81 11 chr4 29921740 29922207 -125707913 + L1_Mus2 LINE L1 6063 6562 -4 6 813 1124 54 0 20 chr4 29922233 29922383 -125707737 + B1_Mus2 SINE Alu 1 147 0 6 813 302 32 30 61 chr4 29922384 29922450 -125707670 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 6 813 21 0 0 0 chr4 29923170 29923191 -125706929 + AT_rich Low_complexity Low_complexity 1 21 0 6 813 295 364 16 25 chr4 29923456 29923577 -125706543 - ID_B1 SINE B4 -2 222 103 6 813 301 252 86 1 chr4 29923710 29923844 -125706276 + Lx8 LINE L1 5695 5875 -425 6 813 21 0 0 0 chr4 29926333 29926354 -125703766 + AT_rich Low_complexity Low_complexity 1 21 0 6 813 417 278 96 105 chr4 29926617 29926674 -125703446 - B3 SINE B2 0 216 167 6 813 567 66 0 0 chr4 29926674 29926750 -125703370 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 813 417 278 96 105 chr4 29926750 29926901 -125703219 - B3 SINE B2 -50 166 10 6 813 1749 219 16 5 chr4 29927286 29927654 -125702466 + ORR1D1 LTR MaLR 3 374 0 6 813 2142 225 86 51 chr4 29927658 29927704 -125702416 + ORR1D1-int LTR MaLR 6 49 -1321 6 813 915 51 0 0 chr4 29927704 29927821 -125702299 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 6 813 2142 225 86 51 chr4 29927821 29928359 -125701761 + ORR1D1-int LTR MaLR 50 610 -760 6 813 1929 231 43 38 chr4 29928372 29928817 -125701303 + ORR1D1-int LTR MaLR 717 1163 -207 6 813 2398 183 30 130 chr4 29928808 29929074 -125701046 - RMER4B LTR ERVK -17 568 346 6 813 1056 95 0 0 chr4 29929074 29929221 -125700899 - B1_Mm SINE Alu 0 147 1 6 813 2398 183 30 130 chr4 29929221 29929583 -125700537 - RMER4B LTR ERVK -240 345 3 6 813 475 245 61 54 chr4 29929592 29929739 -125700381 + ORR1D1-int LTR MaLR 1150 1297 -73 6 813 1188 274 30 8 chr4 29929770 29930134 -125699986 + ORR1D1 LTR MaLR 1 372 -2 6 813 1541 190 44 3 chr4 29930348 29930644 -125699476 + ORR1B2 LTR MaLR 59 366 -1 6 813 192 393 73 8 chr4 29930806 29930929 -125699191 - MIRb SINE MIR -120 148 18 6 813 414 0 0 0 chr4 29931478 29931524 -125698596 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 813 271 291 0 0 chr4 29931591 29931646 -125698474 + G-rich Low_complexity Low_complexity 1 55 0 6 813 365 284 15 7 chr4 29931663 29931772 -125698348 - MLT1A1 LTR MaLR -15 393 283 6 813 519 69 0 0 chr4 29931858 29931930 -125698190 + (TTA)n Simple_repeat Simple_repeat 3 74 0 6 813 4929 86 57 0 chr4 29931930 29932719 -125697401 - L1_Mus2 LINE L1 -11 6555 5722 6 813 1131 69 7 0 chr4 29934113 29934257 -125695863 - B1_Mm SINE Alu 0 147 3 6 813 375 127 0 0 chr4 29934297 29934360 -125695760 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 813 234 0 0 0 chr4 29934663 29934689 -125695431 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 813 7361 72 12 3 chr4 29934715 29935849 -125694271 + L1Md_F2 LINE L1 5402 6549 -33 6 813 1948 278 39 31 chr4 29936455 29937074 -125693046 - Lx6 LINE L1 -1047 6413 5790 6 813 501 247 80 11 chr4 29937081 29937257 -125692863 - L1_Mur3 LINE L1 -2283 3597 3410 6 813 682 284 0 0 chr4 29937259 29937407 -125692713 + B1_Mus1 SINE Alu 1 148 0 6 813 1792 204 58 20 chr4 29937444 29937721 -125692399 - L1_Mur3 LINE L1 -2459 3421 3126 6 813 354 23 0 0 chr4 29937721 29937764 -125692356 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 6 813 1792 204 58 20 chr4 29937764 29937982 -125692138 - L1_Mur3 LINE L1 -2755 3125 2908 6 813 2563 131 0 3 chr4 29938211 29938601 -125691519 - L1_Mm LINE L1 -126 5757 5369 6 813 23 33 0 0 chr4 29940110 29940140 -125689980 + AT_rich Low_complexity Low_complexity 1 30 0 6 813 729 319 89 45 chr4 29940727 29940996 -125689124 + B4 SINE B4 12 292 0 6 813 236 28 56 0 chr4 29941015 29941051 -125689069 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 6 813 195 114 0 0 chr4 29941221 29941256 -125688864 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 813 287 229 0 0 chr4 29941256 29941317 -125688803 - URR1B DNA MER1_type -6 219 159 6 813 1389 198 26 26 chr4 29941380 29941686 -125688434 - Lx4A LINE L1 -9 7049 6744 6 813 549 0 0 0 chr4 29942266 29942327 -125687793 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 813 225 231 0 0 chr4 29942510 29942562 -125687558 - Lx5 LINE L1 -1156 5894 5843 6 813 432 0 0 0 chr4 29942566 29942614 -125687506 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 813 468 288 56 1 chr4 29942619 29942784 -125687336 + Lx5 LINE L1 6460 6614 -436 6 813 22 70 0 0 chr4 29943141 29943184 -125686936 + AT_rich Low_complexity Low_complexity 1 43 0 6 813 399 68 0 0 chr4 29943254 29943313 -125686807 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 813 467 256 49 49 chr4 29943313 29943436 -125686684 - B1_Mur1 SINE Alu -9 140 18 6 813 858 109 7 52 chr4 29944155 29944310 -125685810 - L1Md_F2 LINE L1 0 6582 6435 6 813 27 29 0 0 chr4 29944878 29944912 -125685208 + AT_rich Low_complexity Low_complexity 1 34 0 6 813 2133 161 83 2 chr4 29945177 29945576 -125684544 - Lx2 LINE L1 -4 6993 6563 6 813 684 107 0 0 chr4 29945614 29945717 -125684403 + (TA)n Simple_repeat Simple_repeat 1 103 0 6 813 453 116 0 0 chr4 29945717 29945786 -125684334 + (TTA)n Simple_repeat Simple_repeat 2 70 0 6 813 1205 226 51 7 chr4 29945787 29946081 -125684039 - Lx9 LINE L1 -627 7017 6711 6 813 479 231 189 11 chr4 29946089 29946264 -125683856 + Lx9 LINE L1 7261 7466 -178 6 813 606 28 0 0 chr4 29946266 29946338 -125683782 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 813 24 32 0 0 chr4 29946611 29946642 -125683478 + AT_rich Low_complexity Low_complexity 1 31 0 6 813 1240 260 40 10 chr4 29946730 29947033 -125683087 + MTC LTR MaLR 108 419 -2 6 813 1268 220 19 7 chr4 29947038 29947308 -125682812 + MTC-int LTR MaLR 6 278 -980 6 813 2044 188 87 62 chr4 29947298 29947814 -125682306 + MTC-int LTR MaLR 730 1258 0 6 813 460 276 0 38 chr4 29947814 29947946 -125682174 + MTC LTR MaLR 1 127 -273 6 813 414 0 0 0 chr4 29947954 29948000 -125682120 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 813 429 144 26 88 chr4 29948000 29948114 -125682006 + MTC-int LTR MaLR 1021 1127 -131 6 813 1312 180 70 8 chr4 29948112 29948353 -125681767 + MTC LTR MaLR 147 402 -19 6 813 4054 60 2 2 chr4 29948353 29948866 -125681254 + L1Md_F2 LINE L1 6066 6578 -4 7 813 519 173 0 0 chr4 29950050 29950160 -125679960 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 813 779 117 37 6 chr4 29951137 29951300 -125678820 + CT-rich Low_complexity Low_complexity 1 168 0 7 813 5102 152 59 62 chr4 29952061 29953382 -125676738 - L1_Mus2 LINE L1 0 6566 5198 7 813 920 61 53 0 chr4 29953382 29953513 -125676607 + L1_Mus2 LINE L1 6429 6566 0 7 813 2285 187 181 36 chr4 29953513 29953676 -125676444 - L1_Mus2 LINE L1 -686 5197 5035 7 813 5061 98 40 0 chr4 29953679 29954412 -125675708 + L1_Mus3 LINE L1 5870 6631 -7 7 813 474 49 0 0 chr4 29955004 29955065 -125675055 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 813 6556 69 2 8 chr4 29955131 29955334 -125674786 + L1_Mus2 LINE L1 5721 5923 -643 7 813 3422 23 5 0 chr4 29955334 29955728 -125674392 - MTA_Mm LTR MaLR 0 396 1 7 813 6556 69 2 8 chr4 29955728 29956375 -125673745 + L1_Mus2 LINE L1 5924 6566 0 7 813 558 86 0 0 chr4 29956796 29956877 -125673243 + (TA)n Simple_repeat Simple_repeat 1 81 0 7 813 49 66 0 0 chr4 29956890 29956981 -125673139 + AT_rich Low_complexity Low_complexity 1 91 0 7 813 451 296 74 0 chr4 29957126 29957329 -125672791 + L1MC3 LINE L1 7351 7568 -217 7 813 774 105 0 0 chr4 29957425 29957539 -125672581 + (TA)n Simple_repeat Simple_repeat 2 115 0 7 813 498 17 0 0 chr4 29957539 29957597 -125672523 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 813 2748 251 104 11 chr4 29958418 29958691 -125671429 + Lx6 LINE L1 6461 6738 -722 7 813 1118 70 6 0 chr4 29958691 29958848 -125671272 + (GAAA)n Simple_repeat Simple_repeat 2 159 0 7 813 2748 253 101 11 chr4 29958848 29959304 -125670816 + Lx6 LINE L1 6739 7522 -174 7 813 548 335 37 0 chr4 29960199 29960390 -125669730 - Lx8 LINE L1 -205 7268 7071 7 813 310 69 0 33 chr4 29960402 29960462 -125669658 + (CAAAA)n Simple_repeat Simple_repeat 5 62 0 7 813 253 324 90 21 chr4 29960485 29960630 -125669490 - Lx8 LINE L1 -451 7022 6868 7 813 378 0 0 0 chr4 29961720 29961762 -125668358 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 813 477 50 0 0 chr4 29961762 29961821 -125668299 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 813 24 0 0 0 chr4 29962962 29962986 -125667134 + AT_rich Low_complexity Low_complexity 1 24 0 7 813 774 322 165 50 chr4 29963235 29963479 -125666641 - Lx9 LINE L1 -399 7245 6996 7 813 1282 99 16 0 chr4 29963479 29963670 -125666450 + B2_Mm2 SINE B2 1 194 -1 7 813 774 322 165 50 chr4 29963670 29964025 -125666095 - Lx9 LINE L1 -649 6995 6567 7 813 207 0 0 0 chr4 29964025 29964048 -125666072 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 813 774 322 165 50 chr4 29964048 29964094 -125666026 - Lx9 LINE L1 -1078 6566 6524 7 813 285 169 0 0 chr4 29965099 29965158 -125664962 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 813 480 35 0 0 chr4 29965158 29965216 -125664904 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 813 303 85 0 0 chr4 29965225 29965272 -125664848 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 7 813 417 317 179 44 chr4 29965313 29965564 -125664556 - B4 SINE B4 -6 286 2 7 813 264 297 11 11 chr4 29967953 29968045 -125662075 - RLTR4_MM-int LTR ERV1 -3808 3748 3657 7 813 384 339 51 20 chr4 29968482 29968678 -125661442 - RLTR4_MM-int LTR ERV1 -4465 3136 2935 7 813 6987 53 1 5 chr4 29969291 29970174 -125659946 - L1Md_F2 LINE L1 -12 6570 5691 7 813 492 372 115 15 chr4 29970616 29970954 -125659166 - MLT2B2 LTR ERVL -105 410 39 7 813 368 207 110 0 chr4 29971293 29971375 -125658745 + RLTR26 LTR ERVK 1 91 -551 7 813 2089 107 34 0 chr4 29971375 29971673 -125658447 - MERVK26-int LTR ERVK -4426 2493 2186 7 813 942 178 24 8 chr4 29971673 29971868 -125658252 - RLTR26 LTR ERVK -711 195 1 7 813 272 364 30 0 chr4 29972061 29972160 -125657960 + U6 snRNA snRNA 3 104 -3 7 813 2901 251 41 12 chr4 29972162 29972363 -125657757 - RMER1C Other Other -5 1337 1129 7 813 4150 140 7 60 chr4 29972363 29973117 -125657003 + Lx LINE L1 5939 6652 -2 7 813 2901 259 37 13 chr4 29973117 29973654 -125656466 - RMER1C Other Other -214 1128 550 7 813 323 333 33 54 chr4 29973735 29973919 -125656201 + Lx9 LINE L1 7225 7404 -240 7 813 387 0 0 0 chr4 29973919 29973962 -125656158 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 813 359 202 72 18 chr4 29973976 29974087 -125656033 + Lx9 LINE L1 7495 7611 -33 7 813 221 0 35 0 chr4 29975014 29975043 -125655077 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 813 527 110 49 0 chr4 29975043 29975056 -125655064 - B1_Mus2 SINE Alu 0 147 131 7 813 4999 58 3 5 chr4 29975056 29975696 -125654424 - L1Md_F2 LINE L1 0 6582 5944 7 813 527 110 49 0 chr4 29975696 29975764 -125654356 - B1_Mus2 SINE Alu -17 130 63 7 813 1174 231 39 27 chr4 29975937 29976485 -125653635 + Lx6 LINE L1 5682 6259 -1201 7 813 1416 223 20 20 chr4 29976455 29976807 -125653313 + Lx6 LINE L1 6376 6727 -733 7 813 288 258 124 0 chr4 29977080 29977177 -125652943 + PB1D9 SINE Alu 5 113 -7 7 813 396 0 0 0 chr4 29977428 29977472 -125652648 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 813 22 0 0 0 chr4 29977682 29977704 -125652416 + AT_rich Low_complexity Low_complexity 1 22 0 7 813 557 347 44 91 chr4 29977838 29978177 -125651943 - ORR1D2 LTR MaLR -23 347 25 7 813 346 204 10 10 chr4 29978611 29978710 -125651410 + CT-rich Low_complexity Low_complexity 3 101 0 7 813 21 36 0 0 chr4 29978765 29978793 -125651327 + AT_rich Low_complexity Low_complexity 1 28 0 7 813 919 282 63 41 chr4 29979531 29980122 -125649998 + L1_Mur3 LINE L1 3619 4222 -1658 7 813 350 301 115 34 chr4 29980123 29980271 -125649849 + B4 SINE B4 6 165 -127 7 813 212 174 22 0 chr4 29980368 29980414 -125649706 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 813 335 286 102 14 chr4 29980414 29980795 -125649325 + L1M2 LINE L1 4242 4660 -1483 7 813 372 43 0 0 chr4 29980810 29980856 -125649264 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 813 2281 186 129 58 chr4 29981748 29982392 -125647728 + RMER6C LTR ERVK 1 690 0 7 813 24 91 0 0 chr4 29982478 29982544 -125647576 + AT_rich Low_complexity Low_complexity 1 66 0 7 813 6370 74 21 7 chr4 29983309 29984184 -125645936 - L1Md_F2 LINE L1 -3 6579 5693 7 813 9177 72 0 50 chr4 29984167 29985490 -125644630 - L1Md_F2 LINE L1 -614 5269 4013 7 813 302 114 38 12 chr4 29985808 29985852 -125644268 + polypurine Low_complexity Low_complexity 4 49 0 7 813 1039 124 6 6 chr4 29985852 29986030 -125644090 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 7 813 302 114 38 12 chr4 29986030 29986065 -125644055 + polypurine Low_complexity Low_complexity 50 85 0 7 813 471 78 0 0 chr4 29986067 29986131 -125643989 + (CAAAG)n Simple_repeat Simple_repeat 2 65 0 7 813 477 325 141 19 chr4 29986208 29986619 -125643501 - Lx9 LINE L1 -9 7635 7175 7 813 6504 259 53 25 chr4 29987300 29988294 -125641826 - MERVL_2A-int LTR ERVL -2753 3004 1930 7 813 270 0 0 0 chr4 29988294 29988324 -125641796 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 813 6504 231 39 15 chr4 29988324 29989302 -125640818 - MERVL_2A-int LTR ERVL -3769 1992 960 7 813 1600 296 49 94 chr4 29989305 29990029 -125640091 + ORR1D1-int LTR MaLR 528 1333 -176 7 813 201 39 0 0 chr4 29990029 29990055 -125640065 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 813 1600 293 47 104 chr4 29990055 29990210 -125639910 + ORR1D1-int LTR MaLR 1334 1508 -1 7 813 1240 252 34 63 chr4 29990210 29990393 -125639727 + ORR1D1 LTR MaLR 1 178 -196 7 813 513 32 0 0 chr4 29990393 29990456 -125639664 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 7 813 1240 252 34 63 chr4 29990456 29990653 -125639467 + ORR1D1 LTR MaLR 179 370 -4 7 813 3651 221 92 18 chr4 29990992 29992128 -125637992 + Lx4B LINE L1 5728 7058 0 7 813 263 348 13 121 chr4 29993118 29993275 -125636845 + B4A SINE B4 6 145 -147 7 813 712 281 168 32 chr4 29993310 29993649 -125636471 - Lx4B LINE L1 -620 6438 6054 7 813 1689 185 57 44 chr4 29993766 29994173 -125635947 + Lx4B LINE L1 6630 7041 -17 7 813 2251 190 52 24 chr4 29994227 29995273 -125634847 + L1VL2 LINE L1 328 1397 -2218 7 813 6325 174 20 64 chr4 29995270 29996549 -125633571 + Lx LINE L1 4572 5794 -89 7 813 242 0 61 0 chr4 29996549 29996582 -125633538 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 813 988 117 0 0 chr4 29996582 29996719 -125633401 - B1_Mm SINE Alu -9 138 2 7 813 6325 140 33 33 chr4 29996719 29997558 -125632562 + Lx LINE L1 5792 6640 -14 7 813 25 0 0 0 chr4 29997578 29997603 -125632517 + AT_rich Low_complexity Low_complexity 1 25 0 7 813 8562 176 57 20 chr4 29997616 29998398 -125631722 + L1VL2 LINE L1 1392 2191 -1424 7 813 3345 76 21 32 chr4 29998398 29998872 -125631248 + L1Md_F2 LINE L1 6101 6569 -13 7 813 8562 176 57 20 chr4 29998872 29999963 -125630157 + L1VL2 LINE L1 2192 3334 -281 7 813 3223 213 19 8 chr4 30000000 30000673 -125629447 + L1_Mur2 LINE L1 3660 4340 -1537 1 813 7422 67 16 2 chr4 30000673 30001644 -125628476 + L1Md_F2 LINE L1 5598 6582 0 2 813 3223 213 19 8 chr4 30001644 30001740 -125628380 + L1_Mur2 LINE L1 4341 4437 -1440 1 813 1570 289 133 14 chr4 30001737 30002376 -125627744 + Lx9 LINE L1 6698 7412 -232 3 813 321 317 16 39 chr4 30002485 30002613 -125627507 - MTEb LTR MaLR 0 379 255 4 813 724 287 52 48 chr4 30002876 30003333 -125626787 + L1MA6 LINE L1 4727 5185 -958 5 813 296 361 61 8 chr4 30003570 30003832 -125626288 + L1MA6 LINE L1 5759 6034 -266 5 813 205 89 22 22 chr4 30004140 30004186 -125625934 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 6 813 1158 64 0 0 chr4 30004191 30004332 -125625788 - B1_Mus1 SINE Alu -7 141 1 7 813 1384 88 5 0 chr4 30004333 30004526 -125625594 - B2_Mm2 SINE B2 0 195 2 8 813 4954 183 14 27 chr4 30005223 30005811 -125624309 - Lx2B LINE L1 -7 6993 6424 9 813 4318 97 40 41 chr4 30005811 30006563 -125623557 - RMER17A LTR ERVK 0 751 1 1 813 4954 183 14 27 chr4 30006563 30006963 -125623157 - Lx2B LINE L1 -577 6423 6018 9 813 1616 122 19 19 chr4 30006963 30007231 -125622889 + IAPLTR2_Mm LTR ERVK 5 272 -203 1 813 270 306 0 0 chr4 30007285 30007455 -125622665 + CT-rich Low_complexity Low_complexity 2 171 0 1 813 796 126 226 14 chr4 30007470 30007683 -125622437 + IAPLTR1_Mm LTR ERVK 217 475 0 1 813 3755 184 101 1 chr4 30007693 30008585 -125621535 - Lx2B LINE L1 -622 6014 5062 9 813 328 260 48 0 chr4 30008991 30009095 -125621025 - Lx6 LINE L1 -12 7448 7340 1 813 969 327 103 19 chr4 30009212 30009892 -125620228 + Lx8 LINE L1 6709 7445 -28 1 813 28 0 0 0 chr4 30009901 30009929 -125620191 + AT_rich Low_complexity Low_complexity 1 28 0 1 813 26 30 0 0 chr4 30010109 30010142 -125619978 + AT_rich Low_complexity Low_complexity 1 33 0 1 813 579 112 0 0 chr4 30010677 30010766 -125619354 + (GGGA)n Simple_repeat Simple_repeat 1 89 0 1 813 231 36 0 0 chr4 30011007 30011035 -125619085 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 813 7258 44 2 2 chr4 30011194 30012084 -125618036 - L1Md_F2 LINE L1 0 6582 5693 2 813 246 297 54 0 chr4 30012105 30012179 -125617941 - ID4 SINE ID -1 82 5 2 813 1068 225 29 29 chr4 30012223 30012530 -125617590 - Lx LINE L1 0 7696 7390 2 813 26 0 0 0 chr4 30013143 30013169 -125616951 + AT_rich Low_complexity Low_complexity 1 26 0 2 813 216 135 0 0 chr4 30013788 30013825 -125616295 + (T)n Simple_repeat Simple_repeat 1 37 0 2 813 348 65 0 0 chr4 30013828 30013874 -125616246 - B1_Mur4 SINE Alu -2 148 103 2 813 3430 280 113 35 chr4 30014175 30014920 -125615200 + Lx9 LINE L1 5587 6419 -1225 2 813 240 35 0 0 chr4 30014920 30014949 -125615171 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 101 3430 280 113 35 chr4 30014949 30015704 -125614416 + Lx9 LINE L1 6420 7203 -441 2 814 417 271 32 26 chr4 30015843 30015998 -125614122 - L1_Mur3 LINE L1 -263 5617 5462 2 814 2836 193 9 2 chr4 30016047 30016598 -125613522 - Lx LINE L1 -6 6648 6094 2 814 660 319 40 13 chr4 30016602 30016858 -125613262 + Lx7 LINE L1 6524 6783 -913 2 814 253 323 0 0 chr4 30016878 30016940 -125613180 + ORR1D1 LTR MaLR 3 64 -310 3 814 3661 198 49 48 chr4 30016948 30018067 -125612053 + Lx2B LINE L1 5790 6938 -120 3 814 298 239 7 124 chr4 30018534 30018687 -125611433 + Lx9 LINE L1 7509 7643 -1 3 814 475 276 151 5 chr4 30018701 30018887 -125611233 + ORR1D1 LTR MaLR 143 355 -19 3 814 1071 315 78 7 chr4 30018897 30019345 -125610775 + Lx7 LINE L1 6801 7280 -416 2 814 34 0 0 0 chr4 30019425 30019459 -125610661 + AT_rich Low_complexity Low_complexity 1 34 0 3 814 302 0 26 0 chr4 30019752 30019790 -125610330 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 3 814 234 91 0 0 chr4 30019818 30019851 -125610269 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 814 257 294 128 24 chr4 30020049 30020384 -125609736 + Lx7 LINE L1 1354 1723 -4157 3 814 513 359 109 24 chr4 30020420 30020763 -125609357 + Lx7 LINE L1 6478 6835 -861 3 814 546 16 0 0 chr4 30020763 30020826 -125609294 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 814 513 338 163 14 chr4 30020826 30021343 -125608777 + Lx7 LINE L1 6836 7473 0 3 814 467 348 24 4 chr4 30021336 30021584 -125608536 + L1_Rod LINE L1 1744 1996 -3851 3 814 1916 119 21 63 chr4 30021596 30021929 -125608191 + ORR1A2 LTR MaLR 1 319 -8 4 814 303 313 7 30 chr4 30022018 30022153 -125607967 + L1_Rod LINE L1 2099 2230 -3617 3 814 21 0 0 0 chr4 30022243 30022264 -125607856 + AT_rich Low_complexity Low_complexity 1 21 0 4 814 850 297 46 75 chr4 30022876 30023527 -125606593 + Lx7 LINE L1 3625 4259 -1884 3 814 243 0 0 0 chr4 30023527 30023554 -125606566 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 814 924 128 49 7 chr4 30023562 30023704 -125606416 - B1_Mus1 SINE Alu 0 148 1 4 814 850 297 47 80 chr4 30023704 30023892 -125606228 + Lx7 LINE L1 4230 4440 -1703 3 814 346 221 0 0 chr4 30023919 30023987 -125606133 + Lx7 LINE L1 5709 5776 -1920 3 814 383 285 47 22 chr4 30024080 30024267 -125605853 + ORR1C2 LTR MaLR 2 187 -191 4 814 384 97 0 0 chr4 30024267 30024329 -125605791 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 814 876 228 40 20 chr4 30024346 30024547 -125605573 + ORR1C2 LTR MaLR 172 376 -8 4 814 446 354 0 0 chr4 30025282 30025412 -125604708 + ID_B1 SINE B4 87 216 -8 4 814 22 35 0 0 chr4 30025705 30025734 -125604386 + AT_rich Low_complexity Low_complexity 1 29 0 4 814 597 276 6 25 chr4 30026851 30027011 -125603109 + MER89 LTR ERV1 403 559 0 4 814 310 272 68 81 chr4 30027104 30027252 -125602868 - MLT1A LTR MaLR -8 366 221 4 814 24 53 0 0 chr4 30028779 30028817 -125601303 + AT_rich Low_complexity Low_complexity 1 38 0 5 814 857 292 9 32 chr4 30030327 30030546 -125599574 + B3 SINE B2 3 216 0 5 814 1063 243 116 19 chr4 30030558 30030877 -125599243 - ORR1D1 LTR MaLR -16 358 9 5 814 234 234 94 0 chr4 30031095 30031159 -125598961 - MER5A1 DNA MER1_type -3 163 94 5 814 195 42 0 0 chr4 30032232 30032256 -125597864 + (A)n Simple_repeat Simple_repeat 1 24 0 5 814 22 35 0 0 chr4 30035336 30035365 -125594755 + AT_rich Low_complexity Low_complexity 1 29 0 5 814 381 292 17 49 chr4 30035676 30035909 -125594211 - L1_Rod LINE L1 -271 5576 5387 5 814 2166 131 3 0 chr4 30035917 30036230 -125593890 - ORR1A2 LTR MaLR 0 327 14 5 814 239 204 0 0 chr4 30036245 30036289 -125593831 - L1_Rod LINE L1 -491 5356 5313 5 814 1493 305 72 74 chr4 30036287 30037430 -125592690 + Lx9 LINE L1 5781 7074 -570 5 814 400 303 160 11 chr4 30037432 30037719 -125592401 + Lx9 LINE L1 7312 7641 -3 5 814 1078 291 86 64 chr4 30037739 30038721 -125591399 - L1_Rod LINE L1 -525 5322 4320 5 814 180 0 0 0 chr4 30038851 30038871 -125591249 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 814 258 390 0 7 chr4 30038905 30039042 -125591078 - L1_Rod LINE L1 -1805 4042 3907 5 814 1332 235 36 45 chr4 30039042 30039231 -125590889 + MTD LTR MaLR 1 195 -224 6 814 760 88 0 0 chr4 30039231 30039345 -125590775 + L1_Mus1 LINE L1 6453 6566 -1 6 814 1332 235 36 45 chr4 30039345 30039489 -125590631 + MTD LTR MaLR 196 331 -88 6 814 1182 196 9 14 chr4 30039488 30039710 -125590410 + URR1A DNA MER1_type 6 226 0 6 814 597 271 7 28 chr4 30039763 30039956 -125590164 + ORR1D1 LTR MaLR 1 188 -190 6 814 539 263 165 0 chr4 30040005 30040199 -125589921 + ORR1D1 LTR MaLR 149 374 0 6 814 4048 258 36 33 chr4 30040199 30041266 -125588854 + ORR1D1-int LTR MaLR 14 1084 -286 6 814 742 253 152 73 chr4 30041263 30041389 -125588731 + ORR1D1 LTR MaLR 21 167 -207 6 814 632 69 0 19 chr4 30041389 30041493 -125588627 + (TCTCTG)n Simple_repeat Simple_repeat 1 102 0 6 814 742 253 152 73 chr4 30041493 30041620 -125588500 + ORR1D1 LTR MaLR 168 310 -64 6 814 1267 89 12 6 chr4 30041620 30041959 -125588161 + (TTTC)n Simple_repeat Simple_repeat 1 341 0 6 814 742 253 152 73 chr4 30041959 30042031 -125588089 + ORR1D1 LTR MaLR 311 372 -2 6 814 539 282 116 38 chr4 30042062 30042373 -125587747 - L1_Rod LINE L1 -3768 2079 1734 5 814 426 39 0 0 chr4 30042373 30042425 -125587695 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 814 1212 180 51 4 chr4 30042434 30042691 -125587429 - Lx3A LINE L1 -8 6973 6705 6 814 539 282 116 38 chr4 30042691 30042715 -125587405 - L1_Rod LINE L1 -4117 1730 1707 5 814 349 345 79 18 chr4 30042769 30042996 -125587124 - ORR1E LTR MaLR -110 249 9 6 814 297 0 0 0 chr4 30043164 30043197 -125586923 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 814 459 308 14 0 chr4 30043393 30043539 -125586581 + B1F2 SINE Alu 2 149 0 7 814 2063 210 88 85 chr4 30043547 30044265 -125585855 + RMER6D LTR ERVK 1 720 0 7 814 330 288 12 0 chr4 30044839 30044919 -125585201 + ID4_ SINE ID 3 83 0 7 814 197 79 79 0 chr4 30045242 30045280 -125584840 + A-rich Low_complexity Low_complexity 2 42 0 7 814 470 320 57 90 chr4 30045552 30045885 -125584235 - RLTR23 LTR ERV1 0 430 109 7 814 403 229 7 132 chr4 30045912 30046063 -125584057 - RLTR23 LTR ERV1 -291 139 8 7 814 266 254 0 0 chr4 30046368 30046431 -125583689 + RMER5 LTR ERV1 5 67 -467 7 814 692 158 6 56 chr4 30046565 30046635 -125583485 - Lx LINE L1 0 6654 6586 7 814 384 0 54 0 chr4 30046635 30046691 -125583429 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 7 814 692 158 6 56 chr4 30046691 30046781 -125583339 - Lx LINE L1 -69 6585 6502 7 814 385 227 10 0 chr4 30046874 30046971 -125583149 + Lx7 LINE L1 7599 7696 0 7 814 829 303 113 16 chr4 30047099 30047418 -125582702 + MTE2b LTR MaLR 4 353 -26 7 814 1137 138 21 0 chr4 30047432 30047621 -125582499 - B2_Mm2 SINE B2 -2 193 1 8 814 2614 345 72 57 chr4 30047639 30048052 -125582068 + MTE2b-int LTR MaLR 1 418 -1162 7 814 2789 79 9 80 chr4 30048052 30048505 -125581615 - BGLII LTR ERVK 0 421 1 8 814 2614 345 72 57 chr4 30048505 30048631 -125581489 + MTE2b-int LTR MaLR 419 504 -1076 7 814 1051 50 0 0 chr4 30048631 30048771 -125581349 + L1_Mus2 LINE L1 6427 6566 0 8 814 2614 345 72 57 chr4 30048771 30048786 -125581334 + MTE2b-int LTR MaLR 505 515 -1065 7 814 1163 64 116 6 chr4 30048786 30048959 -125581161 + B2_Mm2 SINE B2 4 195 0 8 814 2614 345 72 57 chr4 30048959 30049818 -125580302 + MTE2b-int LTR MaLR 516 1437 -143 7 814 705 299 83 141 chr4 30049814 30049953 -125580167 - MTE2a LTR MaLR -4 375 217 8 814 522 0 0 0 chr4 30049953 30050011 -125580109 + (GA)n Simple_repeat Simple_repeat 2 59 0 8 814 705 299 83 141 chr4 30050011 30050268 -125579852 - MTE2a LTR MaLR -163 216 3 8 814 343 305 14 34 chr4 30050272 30050418 -125579702 + MTE2b-int LTR MaLR 1432 1574 -6 7 814 421 383 30 38 chr4 30050425 30050691 -125579429 + MTE2b LTR MaLR 3 266 -113 7 814 334 294 192 53 chr4 30052174 30052361 -125577759 + ID_B1 SINE B4 4 216 -8 8 814 23 50 0 48 chr4 30053460 30053523 -125576597 + AT_rich Low_complexity Low_complexity 1 60 0 8 814 519 60 0 0 chr4 30053526 30053593 -125576527 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 814 210 37 0 0 chr4 30053984 30054011 -125576109 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8 814 816 232 65 35 chr4 30054201 30054402 -125575718 - ORR1C2 LTR MaLR -4 380 174 9 814 585 126 0 0 chr4 30054406 30054517 -125575603 + (CA)n Simple_repeat Simple_repeat 2 112 0 9 814 2053 148 6 3 chr4 30054517 30054842 -125575278 + ORR1A2 LTR MaLR 2 327 0 9 814 249 196 0 0 chr4 30054846 30054892 -125575228 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 814 501 154 0 0 chr4 30054892 30054983 -125575137 + (TA)n Simple_repeat Simple_repeat 2 92 0 9 814 768 234 42 6 chr4 30055013 30055181 -125574939 - ORR1C2 LTR MaLR -200 174 1 9 814 324 120 0 0 chr4 30055203 30055253 -125574867 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 814 1214 124 5 11 chr4 30055629 30055817 -125574303 + B2_Mm1t SINE B2 7 193 0 9 814 288 91 0 0 chr4 30055853 30055897 -125574223 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 9 814 2142 113 22 0 chr4 30056918 30057366 -125572754 - L1Md_A LINE L1 -4317 1566 1109 9 814 837 80 8 0 chr4 30057366 30057491 -125572629 + L1_Mus1 LINE L1 6439 6564 -3 9 814 208 329 13 0 chr4 30059209 30059285 -125570835 + MIRb SINE MIR 93 169 -99 1 814 22 70 0 0 chr4 30059769 30059812 -125570308 + AT_rich Low_complexity Low_complexity 1 43 0 1 814 255 61 0 0 chr4 30059832 30059865 -125570255 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 814 270 411 39 0 chr4 30059884 30060013 -125570107 - RSINE1 SINE B4 -29 136 3 1 814 29 28 0 0 chr4 30060680 30060716 -125569404 + AT_rich Low_complexity Low_complexity 1 36 0 1 814 309 261 8 25 chr4 30060894 30060901 -125569219 + (TA)n Simple_repeat Simple_repeat 1 7 0 1 814 198 0 0 0 chr4 30060901 30060923 -125569197 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 814 309 261 8 25 chr4 30060923 30061037 -125569083 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 814 891 328 77 43 chr4 30061341 30061962 -125568158 + Lx8 LINE L1 6832 7473 0 1 814 344 294 64 89 chr4 30062627 30062784 -125567336 + HAL1-3A_ME LINE L1 2286 2438 -420 1 814 340 304 167 106 chr4 30062952 30063258 -125566862 + MTE2a LTR MaLR 13 337 -42 1 814 640 29 39 10 chr4 30063559 30063663 -125566457 + L1Md_F3 LINE L1 6477 6583 -1 1 814 705 212 60 6 chr4 30063966 30064131 -125565989 + RMER6C LTR ERVK 1 174 -516 1 814 767 222 11 26 chr4 30064131 30064321 -125565799 + RMER17C LTR ERVK 1 187 -223 1 814 351 0 0 0 chr4 30064324 30064363 -125565757 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 814 666 206 23 122 chr4 30064514 30064735 -125565385 + RMER17C LTR ERVK 183 381 -29 1 814 978 56 0 0 chr4 30064742 30064867 -125565253 + (TCC)n Simple_repeat Simple_repeat 2 126 0 1 814 628 245 7 0 chr4 30064961 30065104 -125565016 + RMER6C LTR ERVK 571 714 -6 1 814 396 0 0 0 chr4 30067699 30067743 -125562377 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 1 814 1174 85 6 6 chr4 30067745 30067923 -125562197 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 814 2088 115 12 58 chr4 30067925 30068268 -125561852 + ORR1A2 LTR MaLR 1 327 0 1 814 23 0 0 0 chr4 30068491 30068514 -125561606 + AT_rich Low_complexity Low_complexity 1 23 0 1 814 256 353 0 76 chr4 30069290 30069474 -125560646 + Lx8 LINE L1 6782 6951 -522 1 814 906 238 80 110 chr4 30069475 30069876 -125560244 + RLTR18B LTR ERVK 2 390 -122 1 814 366 323 66 29 chr4 30070050 30070187 -125559933 - ORR1D2 LTR MaLR -228 142 1 1 814 547 280 209 30 chr4 30070921 30071223 -125558897 + ORR1D2 LTR MaLR 19 374 0 1 814 2793 312 82 49 chr4 30071228 30072508 -125557612 + ORR1D2-int LTR MaLR 6 1933 -30 1 814 1031 276 106 3 chr4 30072510 30072822 -125557298 + ORR1D2 LTR MaLR 10 353 -17 1 814 235 247 105 105 chr4 30073002 30073192 -125556928 - RLTR12A LTR ERVK -4 564 375 1 814 357 337 0 0 chr4 30073569 30073661 -125556459 + RSINE1 SINE B4 72 163 -2 1 814 236 256 13 13 chr4 30074046 30074125 -125555995 - Lx8 LINE L1 0 7473 7395 1 814 22 80 0 0 chr4 30074154 30074204 -125555916 + AT_rich Low_complexity Low_complexity 1 50 0 1 814 1678 71 4 0 chr4 30074204 30074429 -125555691 + L1_Mus2 LINE L1 5640 5865 -701 1 814 1295 165 47 0 chr4 30074425 30074661 -125555459 + Lx2 LINE L1 4925 5171 -715 1 814 5918 155 42 1 chr4 30074662 30075965 -125554155 + Lx2 LINE L1 5289 6645 -352 1 814 752 123 51 25 chr4 30075984 30076142 -125553978 + Lx2 LINE L1 6836 6997 0 1 814 453 318 39 13 chr4 30076260 30076566 -125553554 - L1_Rod LINE L1 -4065 1782 1469 1 814 827 83 8 0 chr4 30078430 30078551 -125551569 + (TTTTC)n Simple_repeat Simple_repeat 5 126 0 1 814 4028 117 34 20 chr4 30078566 30079219 -125550901 - Lx LINE L1 -7 6647 5986 1 814 5738 129 12 40 chr4 30079220 30080819 -125549301 + L1Md_F LINE L1 591 2160 -3723 1 814 4426 45 9 4 chr4 30080819 30081375 -125548745 + L1Md_F3 LINE L1 6025 6583 -1 1 814 231 204 0 0 chr4 30081376 30081425 -125548695 + L1_Mm LINE L1 5030 5078 -805 1 814 2998 283 9 103 chr4 30081422 30082693 -125547427 - RMER1C Other Other -8 1334 164 1 814 983 292 43 55 chr4 30083029 30083355 -125546765 + RMER1B Other Other 596 917 -149 1 814 572 77 11 0 chr4 30084882 30084973 -125545147 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 814 232 301 132 9 chr4 30085003 30085117 -125545003 + MLT1A1 LTR MaLR 59 186 -179 1 814 180 0 0 0 chr4 30085207 30085227 -125544893 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 814 292 312 47 31 chr4 30085511 30085640 -125544480 + MLT1A1 LTR MaLR 276 406 -2 1 814 2512 214 45 11 chr4 30087211 30087772 -125542348 - Lx4B LINE L1 -17 7041 6462 1 814 3056 194 32 2 chr4 30087770 30088504 -125541616 + Lx4B LINE L1 5247 6004 -1054 1 814 547 335 36 90 chr4 30091023 30091436 -125538684 - L1M2 LINE L1 -2464 3679 3289 1 814 423 0 0 0 chr4 30091451 30091498 -125538622 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 814 234 128 0 0 chr4 30091498 30091536 -125538584 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 814 316 291 49 27 chr4 30091885 30092069 -125538051 - L1M2 LINE L1 -2851 3292 3105 1 814 360 216 102 24 chr4 30092201 30092260 -125537860 - RMER17C LTR ERVK -135 275 217 1 814 543 56 0 0 chr4 30092260 30092331 -125537789 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 814 360 216 102 24 chr4 30092331 30092437 -125537683 - RMER17C LTR ERVK -194 216 97 1 814 838 263 26 22 chr4 30092471 30092739 -125537381 + Lx6 LINE L1 56 324 -7404 1 814 1224 255 45 2 chr4 30092755 30093152 -125536968 + Lx6 LINE L1 2007 2420 -3460 1 814 826 322 64 10 chr4 30093154 30093449 -125536671 - Lx6 LINE L1 -2 7458 7148 1 814 712 188 7 0 chr4 30093452 30093601 -125536519 + Lx5 LINE L1 5680 5829 -1221 1 814 180 0 0 0 chr4 30093626 30093646 -125536474 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 814 1149 43 0 0 chr4 30093648 30093787 -125536333 - B1_Mm SINE Alu -6 141 3 1 814 1203 199 101 61 chr4 30093803 30094247 -125535873 + Lx6 LINE L1 2436 2897 -2983 1 814 3509 236 104 65 chr4 30094242 30095109 -125535011 + Lx6 LINE L1 4480 5428 -2032 1 814 228 289 40 30 chr4 30095109 30095209 -125534911 + Charlie5 DNA MER1_type 1199 1299 -1325 1 814 3509 236 104 65 chr4 30095209 30096514 -125533606 + Lx6 LINE L1 5429 6860 -600 1 814 333 0 0 0 chr4 30096515 30096552 -125533568 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 814 1045 204 9 4 chr4 30096635 30096867 -125533253 - Lx2 LINE L1 -6 6991 6759 1 814 189 196 0 0 chr4 30096963 30097014 -125533106 + CT-rich Low_complexity Low_complexity 1 51 0 1 814 258 32 0 0 chr4 30097066 30097097 -125533023 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 814 198 91 0 0 chr4 30097100 30097133 -125532987 + (A)n Simple_repeat Simple_repeat 1 33 0 1 814 6655 114 2 0 chr4 30097133 30098103 -125532017 + L1Md_F LINE L1 214 1185 -5804 1 814 5414 78 18 6 chr4 30098096 30099450 -125530670 + L1Md_F LINE L1 603 1973 -3910 1 814 3069 88 61 9 chr4 30099468 30099924 -125530196 + L1Md_F2 LINE L1 6101 6580 -2 1 814 6005 166 27 3 chr4 30100150 30101606 -125528514 + Lx LINE L1 5164 6647 -7 1 814 289 276 47 19 chr4 30101631 30101738 -125528382 - Lx7 LINE L1 -533 7163 7054 1 814 782 277 52 8 chr4 30101735 30101986 -125528134 + Lx7 LINE L1 6818 7079 -617 1 814 23 0 0 0 chr4 30102004 30102027 -125528093 + AT_rich Low_complexity Low_complexity 1 23 0 1 814 485 226 39 0 chr4 30103153 30103255 -125526865 - B1F SINE Alu -11 138 33 1 814 198 103 0 0 chr4 30103845 30103874 -125526246 + (T)n Simple_repeat Simple_repeat 1 29 0 1 814 944 240 24 6 chr4 30104190 30104472 -125525648 - L1_Mur3 LINE L1 -604 5279 4983 1 814 544 222 87 0 chr4 30104502 30104628 -125525492 - B1_Mus1 SINE Alu -1 147 11 1 814 684 177 8 0 chr4 30104639 30104769 -125525351 - L1_Mur3 LINE L1 -885 4995 4865 1 814 426 57 0 0 chr4 30104774 30104827 -125525293 - ORR1A3 LTR MaLR 0 326 274 1 814 228 35 0 0 chr4 30104827 30104856 -125525264 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 814 323 181 0 53 chr4 30104856 30104878 -125525242 - ORR1A3 LTR MaLR -53 325 307 1 814 22 70 0 0 chr4 30105087 30105130 -125524990 + AT_rich Low_complexity Low_complexity 1 43 0 1 814 5099 98 79 1 chr4 30105130 30105889 -125524231 - Lx3_Mus LINE L1 -8 7001 6184 1 814 466 116 0 0 chr4 30105891 30105960 -125524160 + Lx3_Mus LINE L1 6091 6159 -850 1 814 1239 122 0 5 chr4 30105960 30106157 -125523963 - Lx2 LINE L1 -18 6979 6784 1 814 1567 189 3 28 chr4 30106157 30106446 -125523674 - ORR1A3 LTR MaLR -44 282 1 1 814 5079 207 35 96 chr4 30106446 30106672 -125523448 - L1_Mur3 LINE L1 -1016 4864 4646 1 814 2470 94 90 16 chr4 30106672 30107051 -125523069 + MTB_Mm LTR MaLR 1 407 0 1 814 5079 207 35 96 chr4 30107051 30107866 -125522254 - L1_Mur3 LINE L1 -1235 4645 3810 1 814 549 0 0 0 chr4 30107866 30107927 -125522193 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 814 5079 207 35 96 chr4 30107927 30107957 -125522163 - L1_Mur3 LINE L1 -2071 3809 3809 1 814 1144 77 0 0 chr4 30107957 30108100 -125522020 - B1_Mus1 SINE Alu -5 143 1 1 814 5079 207 35 96 chr4 30108100 30108639 -125521481 - L1_Mur3 LINE L1 -2071 3809 3349 1 814 720 192 64 0 chr4 30108639 30108795 -125521325 - URR1B DNA MER1_type 0 225 60 1 814 2247 213 71 85 chr4 30108824 30109176 -125520944 - L1_Mur3 LINE L1 -2524 3356 2999 1 814 198 0 0 0 chr4 30109176 30109198 -125520922 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 814 2247 213 71 85 chr4 30109198 30109749 -125520371 - L1_Mur3 LINE L1 -2882 2998 2466 1 814 357 43 0 0 chr4 30109771 30109818 -125520302 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 814 2043 223 30 2 chr4 30109904 30110469 -125519651 - L1_Mur3 LINE L1 -3925 1955 1375 1 814 20670 128 82 6 chr4 30110473 30116136 -125513984 - L1Md_A LINE L1 -3 6579 439 1 814 1410 221 15 64 chr4 30116136 30116631 -125513489 - L1_Mur3 LINE L1 -4494 1386 906 1 814 921 271 15 11 chr4 30116634 30116895 -125513225 - L1_Mur3 LINE L1 -7169 559 298 1 814 572 258 98 18 chr4 30117876 30118101 -125512019 - L3 LINE CR1 -127 4362 4120 1 814 205 345 33 11 chr4 30118101 30118192 -125511928 + MIRc SINE MIR 128 220 -48 1 814 206 98 0 47 chr4 30119369 30119412 -125510708 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 814 22 0 0 0 chr4 30120104 30120126 -125509994 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 1032 137 6 0 chr4 30120541 30120716 -125509404 - L1_Mus3 LINE L1 0 6638 6463 1 814 929 15 137 0 chr4 30122454 30122585 -125507535 + L1Md_F3 LINE L1 6434 6582 -2 1 814 6140 146 56 120 chr4 30123871 30125306 -125504814 + Lx3_Mus LINE L1 5666 7009 0 1 814 21 36 0 0 chr4 30125824 30125852 -125504268 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 6443 105 12 5 chr4 30126376 30128200 -125501920 + L1VL4 LINE L1 23 1860 -1699 1 814 6376 146 37 2 chr4 30128187 30129609 -125500511 + Lx2 LINE L1 5166 6645 -352 1 814 1305 162 18 0 chr4 30129598 30129826 -125500294 + Lx2 LINE L1 6765 6996 -1 1 814 246 263 105 0 chr4 30130251 30130327 -125499793 - Lx9 LINE L1 -289 7355 7272 1 814 21 57 0 0 chr4 30130340 30130375 -125499745 + AT_rich Low_complexity Low_complexity 1 35 0 1 814 1789 163 52 0 chr4 30130406 30130732 -125499388 + RLTR15 LTR ERVK 1 343 -16 1 814 260 196 52 78 chr4 30132646 30132762 -125497358 - RMER17A2 LTR ERVK -536 370 258 1 814 980 96 7 0 chr4 30132797 30132932 -125497188 + B1_Mus1 SINE Alu 3 138 -10 1 814 297 0 0 0 chr4 30132932 30132965 -125497155 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 814 328 264 65 59 chr4 30133235 30133531 -125496589 + L1_Mur3 LINE L1 4279 4541 -1602 2 814 449 196 104 61 chr4 30133528 30133691 -125496429 + Lx9 LINE L1 1631 1800 -4047 2 814 614 234 202 13 chr4 30133704 30133942 -125496178 + Lx9 LINE L1 4998 5280 -567 2 814 23 0 0 0 chr4 30134414 30134437 -125495683 + AT_rich Low_complexity Low_complexity 1 23 0 2 814 1108 57 17 28 chr4 30134468 30134648 -125495472 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 814 863 132 0 39 chr4 30134648 30134820 -125495300 + CT-rich Low_complexity Low_complexity 3 168 0 2 814 8328 131 16 10 chr4 30134820 30136325 -125493795 - Lx3A LINE L1 -17 6964 5450 2 814 285 190 0 65 chr4 30136300 30136362 -125493758 - Lx3A LINE L1 -1324 5657 5600 2 814 1919 128 68 23 chr4 30136363 30136513 -125493607 + L1_Mur1 LINE L1 4650 4802 -1084 2 814 279 0 0 0 chr4 30136513 30136544 -125493576 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 814 1919 128 68 23 chr4 30136544 30136745 -125493375 + L1_Mur1 LINE L1 4803 5017 -869 2 814 642 205 208 27 chr4 30139254 30139369 -125490751 + Lx9 LINE L1 5569 5721 -126 2 814 510 17 0 0 chr4 30139369 30139428 -125490692 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 814 642 249 123 26 chr4 30139428 30139630 -125490490 + Lx9 LINE L1 5722 5959 -1685 2 814 2433 251 36 65 chr4 30139801 30140554 -125489566 + Lx9 LINE L1 6306 7036 -608 2 814 529 153 172 7 chr4 30140570 30140715 -125489405 - Lx4A LINE L1 -854 6204 6036 2 814 1328 300 71 43 chr4 30140726 30141335 -125488785 + Lx9 LINE L1 6741 7366 -278 2 814 21 82 0 0 chr4 30141478 30141527 -125488593 + AT_rich Low_complexity Low_complexity 1 49 0 2 814 210 150 0 0 chr4 30142036 30142076 -125488044 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2 814 606 209 144 0 chr4 30142078 30142231 -125487889 - Lx4B LINE L1 -19 7039 6865 2 814 460 251 84 80 chr4 30142302 30142553 -125487567 + L1M2 LINE L1 5542 5793 -498 2 814 449 34 17 0 chr4 30142918 30142977 -125487143 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 814 707 92 9 0 chr4 30144837 30144946 -125485174 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 2 814 352 280 73 7 chr4 30144950 30145101 -125485019 + Lx7 LINE L1 7536 7696 0 2 814 261 83 0 0 chr4 30146229 30146265 -125483855 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 814 230 317 95 40 chr4 30146325 30146473 -125483647 + L2 LINE L2 2551 2706 -713 2 815 843 234 44 10 chr4 30147370 30147437 -125482683 - ORR1C2 LTR MaLR 0 384 319 2 815 1960 167 29 0 chr4 30147437 30147778 -125482342 + Lx2 LINE L1 6646 6996 -1 2 815 843 234 44 10 chr4 30147778 30147913 -125482207 - ORR1C2 LTR MaLR -66 318 175 2 815 22 0 0 0 chr4 30149491 30149513 -125480607 + AT_rich Low_complexity Low_complexity 1 22 0 2 815 232 157 0 41 chr4 30149613 30149686 -125480434 + (TCTCTG)n Simple_repeat Simple_repeat 2 71 0 2 815 212 147 0 0 chr4 30149687 30149721 -125480399 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 815 327 253 11 0 chr4 30149924 30150011 -125480109 - Lx8 LINE L1 -1312 6161 6074 2 815 210 191 0 0 chr4 30150015 30150057 -125480063 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 2 815 612 346 150 32 chr4 30150057 30150990 -125479130 + Lx7 LINE L1 6168 7219 -477 2 815 8197 130 19 9 chr4 30151377 30153207 -125476913 + Lx3A LINE L1 5128 6972 -9 2 815 24 32 0 0 chr4 30153349 30153380 -125476740 + AT_rich Low_complexity Low_complexity 1 31 0 2 815 206 169 113 48 chr4 30153889 30153951 -125476169 + MIRm SINE MIR 117 182 -94 2 815 1186 337 30 4 chr4 30154262 30154730 -125475390 + Tigger9b DNA MER2_type 2 481 -143 2 815 330 159 0 0 chr4 30155357 30155426 -125474694 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 2 815 241 216 13 13 chr4 30155426 30155501 -125474619 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 2 815 572 136 5 45 chr4 30155501 30155723 -125474397 + (TAGA)n Simple_repeat Simple_repeat 1 212 0 2 815 2464 102 78 48 chr4 30155724 30156185 -125473935 - IAPLTR2_Mm LTR ERVK 0 475 1 2 815 57931 10 2 2 chr4 30156185 30162634 -125467486 - IAPEz-int LTR ERVK 0 6481 35 2 815 2486 98 78 48 chr4 30162644 30163105 -125467015 - IAPLTR2_Mm LTR ERVK 0 475 1 2 815 451 0 34 0 chr4 30163105 30163164 -125466956 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 815 22 0 0 0 chr4 30163971 30163993 -125466127 + AT_rich Low_complexity Low_complexity 1 22 0 2 815 23 0 0 0 chr4 30165162 30165185 -125464935 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 788 80 0 9 chr4 30165259 30165373 -125464747 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 2 815 387 358 32 32 chr4 30166451 30166607 -125463513 - B3A SINE B2 -16 182 27 2 815 36 40 0 0 chr4 30166607 30166657 -125463463 + AT_rich Low_complexity Low_complexity 1 50 0 2 815 8171 45 8 0 chr4 30166657 30168172 -125461948 - L1Md_F2 LINE L1 -15 6567 5040 2 815 8859 101 5 5 chr4 30168172 30170200 -125459920 - L1_Mus1 LINE L1 -10 6557 4533 2 815 2318 161 32 0 chr4 30170444 30170847 -125459273 - L1_Mus4 LINE L1 -68 5815 5400 2 815 5351 127 21 2 chr4 30170847 30171668 -125458452 + L1_Mus4 LINE L1 5799 6634 -2 2 815 597 274 28 127 chr4 30172520 30172733 -125457387 + B3 SINE B2 2 193 -2 2 815 30 0 0 0 chr4 30172885 30172915 -125457205 + AT_rich Low_complexity Low_complexity 1 30 0 2 815 295 322 88 36 chr4 30174007 30174596 -125455524 + L1MC4a LINE L1 7262 7881 -1 2 815 990 82 34 0 chr4 30175256 30175402 -125454718 + L1_Mus2 LINE L1 6415 6565 -1 2 815 30 27 0 0 chr4 30175856 30175893 -125454227 + AT_rich Low_complexity Low_complexity 1 37 0 2 815 26 30 0 0 chr4 30176009 30176042 -125454078 + AT_rich Low_complexity Low_complexity 1 33 0 2 815 207 0 0 0 chr4 30176431 30176454 -125453666 + (A)n Simple_repeat Simple_repeat 1 23 0 2 815 1824 322 88 37 chr4 30177572 30178582 -125451538 + Lx9 LINE L1 6367 7439 -205 2 815 189 0 0 0 chr4 30178582 30178603 -125451517 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 815 1824 322 88 37 chr4 30178603 30178616 -125451504 + Lx9 LINE L1 7440 7451 -193 2 815 3468 28 0 0 chr4 30178616 30179012 -125451108 + MTA_Mm LTR MaLR 1 396 0 2 815 1824 322 88 37 chr4 30179012 30179077 -125451043 + Lx9 LINE L1 7452 7512 -132 2 815 4019 126 26 31 chr4 30179509 30179527 -125450593 - Lx3A LINE L1 -1 6980 6967 2 815 540 111 0 0 chr4 30179527 30179608 -125450512 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 2 815 4019 126 26 31 chr4 30179608 30180276 -125449844 - Lx3A LINE L1 -15 6966 6297 2 815 27 62 0 0 chr4 30180680 30180728 -125449392 + AT_rich Low_complexity Low_complexity 1 48 0 2 815 13794 51 3 1 chr4 30180728 30183135 -125446985 - L1Md_F2 LINE L1 -13 6569 4158 2 815 401 11 0 0 chr4 30183135 30183188 -125446932 + L1Md_F2 LINE L1 4092 4150 -1733 2 815 228 339 23 53 chr4 30184090 30184221 -125445899 + B1F1 SINE Alu 2 128 -21 2 815 483 18 0 0 chr4 30184233 30184289 -125445831 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 2 815 22 35 0 0 chr4 30184318 30184347 -125445773 + AT_rich Low_complexity Low_complexity 1 29 0 2 815 5426 39 5 5 chr4 30184801 30185470 -125444650 + L1Md_F2 LINE L1 5911 6579 -3 2 815 21 57 0 0 chr4 30185502 30185537 -125444583 + AT_rich Low_complexity Low_complexity 1 35 0 2 815 186 43 0 0 chr4 30186199 30186222 -125443898 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 815 3759 65 4 0 chr4 30186322 30186800 -125443320 + L1_Mus1 LINE L1 6088 6567 0 2 815 3250 105 30 4 chr4 30187279 30187777 -125442343 - Lx LINE L1 -2 6652 6142 2 815 1924 281 63 7 chr4 30188095 30188632 -125441488 - Lx5 LINE L1 -13 7037 6471 2 815 270 184 0 0 chr4 30188622 30188671 -125441449 - Lx5 LINE L1 -686 6364 6316 2 815 510 46 0 0 chr4 30188729 30188794 -125441326 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 815 23 33 0 0 chr4 30190227 30190257 -125439863 + AT_rich Low_complexity Low_complexity 1 30 0 2 815 24 85 0 0 chr4 30190410 30190469 -125439651 + AT_rich Low_complexity Low_complexity 1 59 0 2 815 643 296 5 49 chr4 30190490 30190675 -125439445 - B3A SINE B2 -21 177 1 2 815 1940 313 130 29 chr4 30191230 30192212 -125437908 - Lx8 LINE L1 -11 7462 6382 2 815 362 359 90 42 chr4 30192219 30192530 -125437590 + MLT1A1 LTR MaLR 83 408 0 2 815 2303 56 11 0 chr4 30192716 30193000 -125437120 - L1_Mus1 LINE L1 -163 6404 6118 2 815 3369 63 0 0 chr4 30192999 30193427 -125436693 + L1_Mus1 LINE L1 5714 6141 -426 2 815 567 255 62 49 chr4 30193509 30193796 -125436324 + MTD LTR MaLR 39 407 -14 2 815 268 345 32 68 chr4 30193803 30194052 -125436068 + Lx9 LINE L1 6974 7213 -431 2 815 207 69 0 0 chr4 30194664 30194693 -125435427 + (A)n Simple_repeat Simple_repeat 1 29 0 2 815 294 217 7 15 chr4 30194693 30194833 -125435287 + GA-rich Low_complexity Low_complexity 1 138 0 2 815 737 233 55 39 chr4 30194840 30195131 -125434989 + Lx8 LINE L1 7144 7471 -2 2 815 424 390 108 45 chr4 30195715 30195949 -125434171 + MLT1J LTR MaLR 3 258 -254 2 815 423 0 0 0 chr4 30195949 30195996 -125434124 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 815 424 390 108 45 chr4 30195996 30196233 -125433887 + MLT1J LTR MaLR 259 504 -8 2 815 296 408 8 16 chr4 30196302 30196424 -125433696 + RSINE1 SINE B4 37 157 -8 2 815 1648 108 0 0 chr4 30196640 30196891 -125433229 + L1_Mus4 LINE L1 6374 6624 -12 2 815 423 0 0 0 chr4 30197885 30197932 -125432188 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 815 283 192 14 14 chr4 30198008 30198082 -125432038 + GA-rich Low_complexity Low_complexity 4 77 0 2 815 446 255 233 10 chr4 30198553 30198759 -125431361 - Lx9 LINE L1 -8 7636 7385 2 815 27 0 0 0 chr4 30199530 30199557 -125430563 + AT_rich Low_complexity Low_complexity 1 27 0 2 815 434 316 109 15 chr4 30199647 30199914 -125430206 - L1MB1 LINE L1 -110 6079 5788 2 815 426 271 98 49 chr4 30200359 30200584 -125429536 - L1M2 LINE L1 -731 5566 5331 2 815 555 292 47 79 chr4 30201071 30201476 -125428644 + L1_Rod LINE L1 915 1306 -6302 2 815 2165 262 129 23 chr4 30201494 30202270 -125427850 + Lx3C LINE L1 6115 6972 -4 2 815 23 33 0 0 chr4 30202270 30202300 -125427820 + AT_rich Low_complexity Low_complexity 1 30 0 2 815 2353 273 101 35 chr4 30202330 30202404 -125427716 + L1_Rod LINE L1 1361 1426 -4421 2 815 1220 41 0 0 chr4 30202404 30202550 -125427570 - B1_Mus2 SINE Alu 0 147 2 2 815 2353 273 101 35 chr4 30202550 30203666 -125426454 + L1_Rod LINE L1 1427 2629 -3218 2 815 1257 272 41 0 chr4 30203663 30203983 -125426137 + Lx9 LINE L1 6550 6882 -762 2 815 790 312 108 84 chr4 30204043 30204798 -125425322 - RMER13A LTR ERVK 0 860 22 2 815 1787 247 48 35 chr4 30204830 30205365 -125424755 + Lx9 LINE L1 6887 7434 -210 2 815 2040 134 35 0 chr4 30205365 30205679 -125424441 + ORR1A2 LTR MaLR 3 327 0 2 815 1787 247 48 35 chr4 30205679 30205708 -125424412 + Lx9 LINE L1 7435 7460 -184 2 815 564 15 0 0 chr4 30205708 30205773 -125424347 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 815 1787 206 357 3 chr4 30205773 30205909 -125424211 + Lx9 LINE L1 7461 7644 0 2 815 2425 235 46 38 chr4 30205930 30206238 -125423882 + L1_Rod LINE L1 2632 2953 -2894 2 815 396 0 0 0 chr4 30206238 30206282 -125423838 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 815 2425 235 46 38 chr4 30206282 30206821 -125423299 + L1_Rod LINE L1 2954 3486 -2361 2 815 478 223 0 37 chr4 30206839 30206946 -125423174 + RMER6-int LTR ERVK 1640 1742 -1435 3 815 307 146 0 0 chr4 30206944 30206992 -125423128 + RMER6-int LTR ERVK 2470 2517 -660 3 815 369 226 0 0 chr4 30206992 30207054 -125423066 + LSU-rRNA_Hsa rRNA rRNA 1777 1838 -3197 3 815 2624 173 35 56 chr4 30207054 30207647 -125422473 + RMER6-int LTR ERVK 2580 3160 -17 3 815 1260 269 95 77 chr4 30207648 30207663 -125422457 + L1_Rod LINE L1 4443 4454 -1393 2 815 2354 185 91 78 chr4 30207663 30208039 -125422081 + RMER6C LTR ERVK 1 374 -316 3 815 201 139 0 0 chr4 30208039 30208082 -125422038 + (CAGTT)n Simple_repeat Simple_repeat 1 43 0 3 815 2354 185 91 78 chr4 30208082 30208386 -125421734 + RMER6C LTR ERVK 375 690 0 3 815 1260 269 95 77 chr4 30208386 30208561 -125421559 + L1_Rod LINE L1 4455 4637 -1210 2 815 204 40 0 0 chr4 30208561 30208586 -125421534 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 815 1260 269 95 77 chr4 30208586 30209117 -125421003 + L1_Rod LINE L1 4638 5209 -638 2 815 384 22 0 0 chr4 30209117 30209162 -125420958 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 815 1260 269 95 77 chr4 30209162 30209470 -125420650 + L1_Rod LINE L1 5210 5493 -354 2 815 278 284 11 0 chr4 30209482 30209570 -125420550 + Lx9 LINE L1 7350 7438 -206 3 815 222 37 0 0 chr4 30209612 30209639 -125420481 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 815 205 196 22 0 chr4 30210052 30210098 -125420022 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 3 815 232 319 101 19 chr4 30210098 30210366 -125419754 - L1M3 LINE L1 -1097 5046 4757 3 815 259 280 16 20 chr4 30210375 30210476 -125419644 - PB1D7 SINE Alu -2 118 18 3 815 408 301 95 27 chr4 30210840 30211356 -125418764 - L1M3 LINE L1 -2369 3777 3474 3 815 3792 101 6 2 chr4 30211365 30211912 -125418208 - L1_Mus4 LINE L1 -239 6397 5849 3 815 232 207 0 17 chr4 30211912 30211971 -125418149 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 815 222 37 0 0 chr4 30211994 30212021 -125418099 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 3 815 5495 239 36 19 chr4 30212021 30213663 -125416457 - Lx5 LINE L1 -16 7034 5355 3 815 201 74 0 0 chr4 30213663 30213690 -125416430 + (CAT)n Simple_repeat Simple_repeat 3 29 0 3 815 2373 186 69 52 chr4 30213741 30214312 -125415808 - L1_Mur2 LINE L1 -3799 2081 1490 3 815 474 0 15 29 chr4 30214312 30214380 -125415740 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 3 815 1001 103 0 0 chr4 30214380 30214516 -125415604 - B1_Mus1 SINE Alu -12 136 1 3 815 2373 238 64 30 chr4 30214516 30214892 -125415228 - L1_Mur2 LINE L1 -4391 1489 887 3 815 276 169 169 0 chr4 30215297 30215362 -125414758 - Lx9 LINE L1 -157 7487 7412 3 815 580 288 22 9 chr4 30215365 30215589 -125414531 - Lx9 LINE L1 -196 7448 7222 3 815 368 262 205 12 chr4 30215689 30215855 -125414265 - Lx8 LINE L1 -2 7471 7274 3 815 251 318 19 62 chr4 30215882 30216043 -125414077 - Lx8 LINE L1 -409 7064 6911 3 815 518 333 0 32 chr4 30216091 30216280 -125413840 - Lx8 LINE L1 -674 6799 6617 3 815 435 129 0 11 chr4 30216458 30216538 -125413582 + Lx LINE L1 5704 5779 -1229 3 815 339 65 0 0 chr4 30216619 30216665 -125413455 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 815 279 294 99 38 chr4 30217439 30217551 -125412569 + RSINE1 SINE B4 6 127 -38 3 815 1540 183 90 0 chr4 30217551 30217851 -125412269 + ORR1A2 LTR MaLR 1 327 0 3 815 279 294 99 38 chr4 30217851 30217869 -125412251 + RSINE1 SINE B4 128 144 -21 3 815 2789 178 48 100 chr4 30217879 30218383 -125411737 + RLTR20D LTR ERVK 1 460 -108 3 815 183 42 0 0 chr4 30218383 30218407 -125411713 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 815 2789 178 48 100 chr4 30218407 30218501 -125411619 + RLTR20D LTR ERVK 461 567 -1 3 815 363 23 0 0 chr4 30219128 30219172 -125410948 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 815 31 26 0 0 chr4 30219377 30219415 -125410705 + AT_rich Low_complexity Low_complexity 1 38 0 3 815 1662 124 43 30 chr4 30219465 30219764 -125410356 + Lx LINE L1 6345 6647 -7 3 815 186 133 0 0 chr4 30219767 30219797 -125410323 + (A)n Simple_repeat Simple_repeat 1 30 0 3 815 226 273 50 0 chr4 30220045 30220166 -125409954 + ORR1B1-int LTR MaLR 628 754 -755 3 815 932 96 7 0 chr4 30220069 30220205 -125409915 + B1_Mus2 SINE Alu 11 147 0 3 815 21 71 0 0 chr4 30220337 30220379 -125409741 + AT_rich Low_complexity Low_complexity 1 42 0 3 815 423 0 0 0 chr4 30222327 30222374 -125407746 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 815 225 154 0 0 chr4 30223190 30223229 -125406891 + T-rich Low_complexity Low_complexity 3 41 0 3 815 872 159 0 6 chr4 30223278 30223301 -125406819 + polypyrimidine Low_complexity Low_complexity 143 165 0 3 815 1410 56 0 0 chr4 30223301 30223481 -125406639 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 815 872 159 0 6 chr4 30223481 30223622 -125406498 + CT-rich Low_complexity Low_complexity 3 142 0 3 815 6124 125 62 24 chr4 30223644 30224716 -125405404 - Lx3_Mus LINE L1 -16 6993 5881 3 815 276 30 0 0 chr4 30225752 30225785 -125404335 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 815 280 287 29 10 chr4 30225790 30225892 -125404228 + MLT1A1 LTR MaLR 293 396 -12 3 815 2507 249 50 42 chr4 30225962 30226466 -125403654 - Lx6 LINE L1 -43 7417 6896 3 815 606 28 0 0 chr4 30226466 30226538 -125403582 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 815 2507 249 50 42 chr4 30226538 30226708 -125403412 - Lx6 LINE L1 -565 6895 6737 3 815 465 158 0 0 chr4 30226745 30226827 -125403293 + CT-rich Low_complexity Low_complexity 3 84 0 3 815 1061 71 7 21 chr4 30226827 30226971 -125403149 - B1_Mus2 SINE Alu -5 142 1 3 815 928 303 28 106 chr4 30226973 30227246 -125402874 - Lx6 LINE L1 -58 7402 7135 3 815 207 0 0 0 chr4 30227246 30227269 -125402851 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 815 1121 92 10 42 chr4 30227277 30227469 -125402651 - L1_Mus3 LINE L1 0 6638 6453 3 815 928 303 28 106 chr4 30227469 30227611 -125402509 - Lx6 LINE L1 -326 7134 7011 3 815 567 279 7 0 chr4 30227621 30227757 -125402363 - Lx6 LINE L1 -727 6733 6597 3 815 243 0 0 0 chr4 30227758 30227785 -125402335 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 815 2513 41 6 0 chr4 30227790 30228104 -125402016 - MTA_Mm LTR MaLR -80 316 1 3 815 3909 44 32 0 chr4 30228104 30228609 -125401511 - MTA_Mm-int LTR MaLR 0 1098 578 3 815 1043 250 60 27 chr4 30228619 30228919 -125401201 - Lx6 LINE L1 -917 6543 6234 3 815 204 125 0 0 chr4 30229280 30229312 -125400808 + (TAG)n Simple_repeat Simple_repeat 1 32 0 3 815 272 200 26 26 chr4 30229844 30229921 -125400199 + L1MA5 LINE L1 5162 5238 -905 3 815 664 295 102 39 chr4 30229968 30230523 -125399597 + L1MA5 LINE L1 5316 5905 -398 3 815 555 90 0 0 chr4 30231608 30231686 -125398434 + (GGA)n Simple_repeat Simple_repeat 2 79 0 3 815 28 0 0 0 chr4 30231893 30231921 -125398199 + AT_rich Low_complexity Low_complexity 1 28 0 3 815 443 272 24 73 chr4 30232256 30232379 -125397741 + RSINE1 SINE B4 29 145 -20 3 815 324 48 0 0 chr4 30232392 30232434 -125397686 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 815 223 133 42 62 chr4 30232434 30232530 -125397590 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 3 815 26 93 0 0 chr4 30232714 30232789 -125397331 + AT_rich Low_complexity Low_complexity 1 75 0 3 815 379 314 87 11 chr4 30233140 30233417 -125396703 - L1M5 LINE L1 -452 5672 5375 3 815 25 31 0 0 chr4 30233940 30233972 -125396148 + AT_rich Low_complexity Low_complexity 1 32 0 3 815 483 82 0 0 chr4 30235748 30235821 -125394299 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 815 223 167 26 65 chr4 30236038 30236115 -125394005 + T-rich Low_complexity Low_complexity 5 78 0 3 815 201 74 0 0 chr4 30236496 30236523 -125393597 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 815 244 209 114 35 chr4 30236524 30236638 -125393482 + Lx9 LINE L1 7520 7642 -2 3 815 21 0 0 0 chr4 30237618 30237639 -125392481 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 1240 27 0 0 chr4 30238710 30238856 -125391264 + B1_Mm SINE Alu 1 146 -1 3 815 225 0 0 0 chr4 30238857 30238882 -125391238 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 815 266 98 0 19 chr4 30238883 30238935 -125391185 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 3 815 260 352 101 0 chr4 30241177 30241316 -125388804 + L3 LINE CR1 3526 3678 -811 3 815 241 275 0 68 chr4 30242161 30242235 -125387885 + MIRm SINE MIR 113 181 -95 3 815 187 342 120 80 chr4 30244256 30244431 -125385689 - L2c LINE L2 -89 3298 3117 3 815 392 327 194 10 chr4 30244847 30245156 -125384964 + MLT2D LTR ERVL 10 375 -22 3 815 512 152 8 0 chr4 30245157 30245289 -125384831 + CT-rich Low_complexity Low_complexity 2 134 0 3 815 819 164 0 0 chr4 30245330 30245482 -125384638 + (TCTCTG)n Simple_repeat Simple_repeat 1 152 0 3 815 822 109 0 0 chr4 30246573 30246710 -125383410 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 815 226 288 15 15 chr4 30246806 30246873 -125383247 + GA-rich Low_complexity Low_complexity 3 69 0 3 815 213 274 43 86 chr4 30247036 30247067 -125383053 + L4 LINE RTE 1433 1460 -569 3 815 360 0 0 0 chr4 30247067 30247107 -125383013 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 815 213 274 43 86 chr4 30247107 30247191 -125382929 + L4 LINE RTE 1461 1543 -486 3 815 23 78 0 0 chr4 30248451 30248502 -125381618 + AT_rich Low_complexity Low_complexity 1 51 0 3 815 7807 166 29 18 chr4 30249703 30251123 -125378997 + Lx4A LINE L1 5623 7058 0 3 815 950 209 25 45 chr4 30251876 30252072 -125378048 + Lx7 LINE L1 4530 4722 -1158 3 815 240 59 0 0 chr4 30252072 30252106 -125378014 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 3 815 950 209 25 45 chr4 30252106 30252154 -125377966 + Lx7 LINE L1 4723 4768 -1112 3 815 2662 214 75 17 chr4 30252122 30252845 -125377275 + Lx7 LINE L1 5063 5843 -1157 3 815 791 191 80 11 chr4 30252846 30253021 -125377099 + MTC LTR MaLR 1 187 -234 3 815 21 0 0 0 chr4 30253024 30253045 -125377075 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 1798 88 12 0 chr4 30253045 30253296 -125376824 - L1_Mus1 LINE L1 -2 6565 6312 3 815 1140 38 0 0 chr4 30253296 30253429 -125376691 + L1_Mus1 LINE L1 6116 6248 -319 3 815 1158 207 70 9 chr4 30253429 30253684 -125376436 + MTC LTR MaLR 130 421 0 3 815 584 264 50 81 chr4 30253691 30253988 -125376132 + Lx7 LINE L1 5844 6131 -1565 3 815 38463 7 0 1 chr4 30254013 30259808 -125370312 + L1Md_A LINE L1 1 5586 -297 3 815 8938 4 0 6 chr4 30259808 30260810 -125369310 + L1Md_A LINE L1 5587 6582 0 3 815 2850 274 109 38 chr4 30260836 30261957 -125368163 + Lx7 LINE L1 6142 7342 -354 3 815 27 29 0 0 chr4 30261974 30262008 -125368112 + AT_rich Low_complexity Low_complexity 1 34 0 3 815 425 154 11 0 chr4 30262011 30262102 -125368018 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 815 999 188 81 107 chr4 30262118 30262463 -125367657 + Lx7 LINE L1 7361 7696 0 3 815 445 329 68 14 chr4 30263533 30263755 -125366365 - Lx9 LINE L1 -1050 6594 6361 3 815 584 27 14 0 chr4 30263765 30263839 -125366281 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 815 229 155 68 45 chr4 30263868 30263956 -125366164 + (TATATG)n Simple_repeat Simple_repeat 5 94 0 3 815 32 26 0 0 chr4 30264006 30264045 -125366075 + AT_rich Low_complexity Low_complexity 1 39 0 3 815 1532 74 9 0 chr4 30265093 30265310 -125364810 + L1_Mus2 LINE L1 6346 6564 -2 3 815 884 255 55 133 chr4 30265460 30265822 -125364298 + RLTR18B LTR ERVK 33 366 -146 3 815 820 272 41 9 chr4 30266226 30266445 -125363675 - RLTR18B LTR ERVK -9 503 278 3 815 265 308 76 54 chr4 30266437 30266565 -125363555 - RMER10A LTR ERVL -13 429 290 3 815 818 70 0 9 chr4 30266565 30266680 -125363440 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 3 815 265 308 76 54 chr4 30266680 30266774 -125363346 - RMER10A LTR ERVL -153 289 203 3 815 397 265 10 10 chr4 30266879 30266978 -125363142 - RLTR18B LTR ERVK -217 295 197 3 815 314 276 19 28 chr4 30266979 30267087 -125363033 - RLTR15 LTR ERVK -18 341 235 4 815 374 282 75 58 chr4 30267167 30267355 -125362765 - RLTR15 LTR ERVK -168 191 1 4 815 831 277 49 4 chr4 30267374 30267599 -125362521 - RLTR18B LTR ERVK -277 235 1 3 815 529 344 21 0 chr4 30267613 30267799 -125362321 + Lx8 LINE L1 7155 7344 -129 4 815 22 0 0 0 chr4 30267846 30267868 -125362252 + AT_rich Low_complexity Low_complexity 1 22 0 4 815 541 391 49 32 chr4 30270182 30270467 -125359653 - B4A SINE B4 -1 291 2 4 815 24 32 0 0 chr4 30271246 30271277 -125358843 + AT_rich Low_complexity Low_complexity 1 31 0 4 815 23 33 0 0 chr4 30271777 30271807 -125358313 + AT_rich Low_complexity Low_complexity 1 30 0 4 815 603 237 7 0 chr4 30271807 30271942 -125358178 + B1_Mus2 SINE Alu 10 145 -2 4 815 22 0 0 0 chr4 30271951 30271973 -125358147 + AT_rich Low_complexity Low_complexity 1 22 0 4 815 2336 183 11 97 chr4 30272714 30273248 -125356872 - Lx2B LINE L1 -23 6977 6490 4 815 1282 178 64 26 chr4 30273238 30273805 -125356315 - Lx2B LINE L1 -3830 2056 1714 4 815 290 299 0 20 chr4 30274134 30274233 -125355887 + MERVK26-int LTR ERVK 5874 5970 -949 4 815 339 48 48 0 chr4 30274385 30274447 -125355673 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 4 815 299 366 60 29 chr4 30274476 30274757 -125355363 + MERVK26-int LTR ERVK 6574 6863 -56 4 815 278 191 0 35 chr4 30275794 30275881 -125354239 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 4 815 1070 310 76 27 chr4 30276016 30276782 -125353338 + L1MC1 LINE L1 5360 6162 -171 4 815 2079 182 39 15 chr4 30276782 30277172 -125352948 + MTB_Mm LTR MaLR 1 399 -8 4 815 244 191 265 41 chr4 30277419 30277517 -125352603 - B3 SINE B2 0 216 97 4 101 35159 20 2 7 chr4 30277561 30282746 -125347374 + L1Md_A LINE L1 205 5358 -525 4 816 5480 22 23 0 chr4 30282746 30283389 -125346731 + L1Md_A LINE L1 5925 6582 0 4 816 22 56 0 0 chr4 30283439 30283475 -125346645 + AT_rich Low_complexity Low_complexity 1 36 0 4 816 7656 147 18 7 chr4 30283669 30284926 -125345194 - Lx2A1 LINE L1 0 7008 5739 4 816 10477 75 2 1 chr4 30284937 30287073 -125343047 - L1Md_F2 LINE L1 -2 6580 4443 4 816 35891 65 10 5 chr4 30287061 30293209 -125336911 - L1Md_T LINE L1 0 6582 410 4 816 511 181 0 0 chr4 30293196 30293290 -125336830 - Lx2A1 LINE L1 -1251 5757 5664 4 816 6248 186 69 17 chr4 30293289 30295274 -125334846 - L1VL2 LINE L1 -1441 2174 67 4 816 3051 74 5 2 chr4 30295510 30295905 -125334215 - MTA_Mm LTR MaLR 0 396 1 4 816 495 323 81 14 chr4 30296332 30296690 -125333430 + L1MC1 LINE L1 5731 6112 -221 4 816 251 363 47 32 chr4 30297049 30297196 -125332924 - B4A SINE B4 -71 153 10 4 816 549 44 0 0 chr4 30297344 30297412 -125332708 + (TTC)n Simple_repeat Simple_repeat 2 69 0 4 816 216 0 0 0 chr4 30297412 30297436 -125332684 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4 816 1692 244 57 29 chr4 30297664 30298075 -125332045 + RLTR20B3 LTR ERVK 21 430 -147 4 816 2176 112 12 9 chr4 30298075 30298416 -125331704 + Lx LINE L1 6306 6647 -7 4 816 1692 236 56 24 chr4 30298416 30298502 -125331618 + RLTR20B3 LTR ERVK 431 538 -39 4 816 2310 180 42 33 chr4 30298721 30299308 -125330812 - Lx5 LINE L1 -901 6149 5546 4 816 4655 194 168 21 chr4 30299801 30301304 -125328816 - Lx5 LINE L1 -2818 3059 1336 4 816 553 297 34 6 chr4 30301348 30301524 -125328596 - B3A SINE B2 -16 182 2 4 816 322 275 0 0 chr4 30301885 30301965 -125328155 + B3 SINE B2 137 216 0 4 816 7506 136 22 26 chr4 30303120 30304414 -125325706 - Lx3A LINE L1 -3 6978 5691 4 816 26171 117 29 3 chr4 30304411 30309387 -125320733 - Lx3A LINE L1 -465 5421 210 4 816 331 179 26 0 chr4 30309389 30309467 -125320653 - Lx5 LINE L1 -4525 1352 1273 4 816 1382 201 123 19 chr4 30309545 30309895 -125320225 - Lx3A LINE L1 0 7000 6608 4 816 4782 148 46 8 chr4 30309929 30310029 -125320091 - Lx2 LINE L1 0 6997 6884 4 816 287 65 0 21 chr4 30310029 30310076 -125320044 + (CCCA)n Simple_repeat Simple_repeat 1 46 0 4 816 4782 148 46 8 chr4 30310076 30310797 -125319323 - Lx2 LINE L1 -114 6883 6146 4 816 4489 154 21 22 chr4 30310797 30311889 -125318231 + Lx2 LINE L1 5076 6170 -827 4 816 234 0 0 0 chr4 30312060 30312086 -125318034 + (T)n Simple_repeat Simple_repeat 1 26 0 4 816 207 0 0 0 chr4 30312956 30312979 -125317141 + (T)n Simple_repeat Simple_repeat 1 23 0 4 816 37 62 0 0 chr4 30314529 30314594 -125315526 + AT_rich Low_complexity Low_complexity 1 65 0 4 816 1643 72 29 25 chr4 30314688 30314730 -125315390 - Lx3A LINE L1 -1030 5951 5914 4 816 361 19 57 0 chr4 30314730 30314783 -125315337 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 4 816 1643 72 29 25 chr4 30314783 30314981 -125315139 - Lx3A LINE L1 -1068 5913 5710 4 816 3257 153 43 9 chr4 30314985 30315563 -125314557 + Lx3_Mus LINE L1 5961 6558 -451 4 816 3047 175 16 11 chr4 30315542 30316114 -125314006 + Lx3_Mus LINE L1 6060 6634 -20 4 816 366 23 0 0 chr4 30316119 30316162 -125313958 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 816 1345 81 0 0 chr4 30316197 30316370 -125313750 + Lx3A LINE L1 6509 6681 -300 4 816 350 326 0 0 chr4 30316378 30316470 -125313650 - RSINE1 SINE B4 -30 135 44 4 816 1991 207 18 67 chr4 30316758 30317192 -125312928 + MTC LTR MaLR 1 413 -8 4 816 21 0 0 0 chr4 30317337 30317358 -125312762 + AT_rich Low_complexity Low_complexity 1 21 0 4 816 519 31 0 0 chr4 30317773 30317838 -125312282 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 816 419 318 52 48 chr4 30319046 30319317 -125310803 + RLTR15 LTR ERVK 72 343 -16 4 816 26 30 0 0 chr4 30319681 30319714 -125310406 + AT_rich Low_complexity Low_complexity 1 33 0 4 816 288 325 59 49 chr4 30319831 30320119 -125310001 - L1MB3 LINE L1 -57 6126 5836 4 816 2124 153 0 0 chr4 30320126 30320447 -125309673 + ORR1A3 LTR MaLR 6 326 0 4 816 2799 189 18 32 chr4 30320454 30321012 -125309108 + Lx3C LINE L1 6419 6968 -8 4 816 2717 196 28 12 chr4 30321036 30321606 -125308514 + ORR1A3-int LTR MaLR 2 568 -941 4 816 4963 144 11 80 chr4 30321606 30322574 -125307546 - RLTR13D6 LTR ERVK 0 902 1 4 816 3644 184 40 30 chr4 30322574 30323400 -125306720 + ORR1A3-int LTR MaLR 569 1465 -498 4 816 1541 226 98 3 chr4 30323586 30323945 -125306175 - ORR1B1 LTR MaLR -1 393 1 4 816 28 48 0 0 chr4 30324254 30324296 -125305824 + AT_rich Low_complexity Low_complexity 1 42 0 4 816 189 175 0 0 chr4 30324795 30324835 -125305285 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 816 28 91 0 0 chr4 30324835 30324912 -125305208 + AT_rich Low_complexity Low_complexity 1 77 0 4 816 591 286 141 25 chr4 30324989 30325437 -125304683 - L1M3 LINE L1 -2499 3641 3142 4 816 793 318 86 23 chr4 30325457 30325885 -125304235 - Lx8 LINE L1 -8 7465 7011 4 816 409 282 8 0 chr4 30325987 30326104 -125304016 - Lx8 LINE L1 -629 6844 6727 4 816 453 285 19 24 chr4 30326102 30326314 -125303806 - L1_Mur3 LINE L1 -466 5414 5204 4 816 435 68 0 0 chr4 30326415 30326474 -125303646 + (CAGAGA)n Simple_repeat Simple_repeat 4 62 0 4 816 408 88 0 0 chr4 30326493 30326550 -125303570 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 816 340 309 130 30 chr4 30326610 30327010 -125303110 - L1_Rod LINE L1 -2826 3021 2582 4 816 281 68 23 0 chr4 30327013 30327057 -125303063 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 4 816 277 188 0 0 chr4 30327060 30327108 -125303012 - B1_Mur4 SINE Alu -8 142 95 4 816 895 276 61 0 chr4 30327120 30327381 -125302739 + Lx9 LINE L1 6985 7261 -383 4 816 1151 34 0 0 chr4 30328517 30328663 -125301457 - L1Md_A LINE L1 -2 6580 6435 4 816 278 238 101 23 chr4 30328864 30328993 -125301127 - L1M2 LINE L1 -674 5629 5491 4 816 9912 88 8 14 chr4 30329352 30330678 -125299442 - L1_Mus2 LINE L1 -5 6561 5250 4 816 288 0 0 0 chr4 30330678 30330710 -125299410 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 816 9912 116 18 3 chr4 30330710 30331573 -125298547 - L1_Mus2 LINE L1 -634 5249 4363 4 816 365 371 26 7 chr4 30331584 30331736 -125298384 - ID_B1 SINE B4 0 224 70 4 816 547 330 94 17 chr4 30331750 30332290 -125297830 - L1M2 LINE L1 -879 5264 4683 4 816 223 313 69 29 chr4 30333404 30333506 -125296614 - PB1D10 SINE Alu 0 117 12 4 816 2325 196 94 97 chr4 30333632 30334261 -125295859 - RMER20B LTR ERVK 0 627 1 4 816 222 302 113 30 chr4 30335032 30335165 -125294955 + L2c LINE L2 3206 3349 -38 4 816 220 274 16 0 chr4 30335272 30335334 -125294786 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 816 802 110 12 1 chr4 30335790 30335933 -125294187 - L1_Mus3 LINE L1 -415 6239 6094 4 816 563 363 81 8 chr4 30339208 30339466 -125290654 + B4A SINE B4 8 284 -8 4 816 253 356 100 30 chr4 30339787 30340056 -125290064 - Lx8 LINE L1 -4 7469 7182 4 816 318 344 76 29 chr4 30340071 30340385 -125289735 - Lx8 LINE L1 -315 7158 6830 4 816 585 76 0 0 chr4 30340386 30340465 -125289655 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 816 1008 333 53 53 chr4 30340491 30340900 -125289220 - Lx8 LINE L1 -712 6761 6331 4 816 2057 99 75 13 chr4 30340900 30341208 -125288912 + ORR1A2 LTR MaLR 1 327 0 4 816 1008 333 53 53 chr4 30341208 30341359 -125288761 - Lx8 LINE L1 -1143 6330 6201 4 816 21 0 0 0 chr4 30341447 30341468 -125288652 + AT_rich Low_complexity Low_complexity 1 21 0 4 816 26 50 0 0 chr4 30341518 30341558 -125288562 + AT_rich Low_complexity Low_complexity 1 40 0 4 816 1578 134 121 24 chr4 30343346 30343644 -125286476 - IAPEY3_LTR LTR ERVK -5 327 1 4 816 306 303 10 0 chr4 30343859 30343958 -125286162 + RSINE1 SINE B4 11 110 -55 4 816 411 187 18 9 chr4 30343966 30344079 -125286041 + CT-rich Low_complexity Low_complexity 1 114 0 4 816 219 221 0 0 chr4 30344078 30344164 -125285956 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 816 22 0 0 0 chr4 30344831 30344853 -125285267 + AT_rich Low_complexity Low_complexity 1 22 0 4 816 197 0 0 67 chr4 30345609 30345639 -125284481 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 4 816 2607 184 44 14 chr4 30345639 30346157 -125283963 - Lx2 LINE L1 -22 6975 6442 4 816 203 244 0 0 chr4 30346157 30346202 -125283918 + (ATGGTG)n Simple_repeat Simple_repeat 5 49 0 4 816 1875 48 0 0 chr4 30346873 30347104 -125283016 + L1Md_T LINE L1 6352 6582 0 4 816 21 57 0 0 chr4 30347191 30347226 -125282894 + AT_rich Low_complexity Low_complexity 1 35 0 4 816 21 57 0 0 chr4 30347241 30347276 -125282844 + AT_rich Low_complexity Low_complexity 1 35 0 4 816 243 325 24 0 chr4 30347475 30347558 -125282562 - Lx9 LINE L1 -1224 6420 6336 4 816 1569 287 48 16 chr4 30347541 30348150 -125281970 + Lx9 LINE L1 7010 7637 -7 4 816 491 332 125 31 chr4 30349028 30349388 -125280732 + MLT1C LTR MaLR 72 465 -2 4 816 443 309 146 41 chr4 30349977 30350442 -125279678 + L1M4 LINE L1 2416 2929 -3217 4 816 315 105 0 0 chr4 30350980 30351037 -125279083 + (T)n Simple_repeat Simple_repeat 1 57 0 4 816 387 288 155 14 chr4 30351388 30351536 -125278584 + MTD LTR MaLR 169 337 -82 4 816 363 96 0 0 chr4 30351549 30351601 -125278519 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 4 816 333 47 0 0 chr4 30351686 30351729 -125278391 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 816 939 198 5 57 chr4 30351837 30352030 -125278090 - MTC LTR MaLR -8 413 231 5 816 258 298 12 74 chr4 30352100 30352263 -125277857 - RLTR11B LTR ERVK -58 395 243 5 816 180 0 0 0 chr4 30352283 30352303 -125277817 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 5 816 4390 205 52 65 chr4 30352404 30353522 -125276598 + RLTR25A LTR ERVK 1 1103 0 5 816 33694 99 17 9 chr4 30353937 30360261 -125269859 - L1Md_F2 LINE L1 0 6582 214 5 816 1287 254 13 8 chr4 30360596 30360989 -125269131 + L1_Mur2 LINE L1 515 909 -5803 5 816 428 357 51 37 chr4 30360989 30361341 -125268779 - L1MC LINE L1 -2318 3828 3472 5 816 2958 182 27 2 chr4 30362149 30362709 -125267411 - Lx LINE L1 -1 6653 6080 5 816 1001 145 140 0 chr4 30362855 30363048 -125267072 - URR1A DNA MER1_type -6 220 1 5 816 4112 52 35 2 chr4 30363093 30363614 -125266506 + L1Md_F2 LINE L1 6042 6579 -3 5 816 23 0 0 0 chr4 30363700 30363723 -125266397 + AT_rich Low_complexity Low_complexity 1 23 0 5 816 184 131 21 21 chr4 30363746 30363793 -125266327 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 816 1673 209 52 21 chr4 30365140 30365522 -125264598 + ORR1B1 LTR MaLR 1 394 0 5 816 225 65 0 0 chr4 30365648 30365679 -125264441 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 816 1702 136 14 122 chr4 30365838 30366207 -125263913 + ORR1A4 LTR MaLR 1 329 0 5 816 315 0 0 0 chr4 30366229 30366264 -125263856 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 5 816 6606 204 59 9 chr4 30366265 30367449 -125262671 - Lx5 LINE L1 -15 7035 5796 5 816 477 0 0 0 chr4 30367449 30367502 -125262618 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 816 6606 156 70 11 chr4 30367502 30367874 -125262246 - Lx5 LINE L1 -1255 5795 5392 5 816 2582 100 79 5 chr4 30367874 30368266 -125261854 + BGLII LTR ERVK 1 421 0 5 816 556 124 35 9 chr4 30368673 30368787 -125261333 + RMER3D-int LTR ERVK 489 583 -2259 5 816 183 121 102 17 chr4 30368790 30368849 -125261271 + GA-rich Low_complexity Low_complexity 2 65 0 5 816 1734 164 132 21 chr4 30368875 30369360 -125260760 + RMER3D-int LTR ERVK 1014 1533 -1309 5 816 1915 117 55 54 chr4 30369376 30369829 -125260291 + BGLII LTR ERVK 16 444 -1 5 816 1763 256 22 22 chr4 30369835 30370327 -125259793 - Lx9 LINE L1 -270 7374 6883 5 816 261 185 56 0 chr4 30370374 30370428 -125259692 - Lx5 LINE L1 -745 5132 5076 5 816 7199 177 27 35 chr4 30370431 30372143 -125257977 - Lx5 LINE L1 -3042 2835 1140 5 816 3082 78 36 16 chr4 30372150 30372590 -125257530 + L1Md_F2 LINE L1 6121 6569 -13 5 816 21 57 0 0 chr4 30372591 30372626 -125257494 + AT_rich Low_complexity Low_complexity 1 35 0 5 816 1130 175 44 2 chr4 30372690 30372943 -125257177 - Lx5 LINE L1 -5764 1220 895 5 816 269 359 38 0 chr4 30372960 30373119 -125257001 - Lx5 LINE L1 -6354 732 568 5 816 372 230 91 11 chr4 30373466 30373554 -125256566 + PB1D10 SINE Alu 23 117 0 5 816 22 0 0 0 chr4 30373554 30373576 -125256544 + AT_rich Low_complexity Low_complexity 1 22 0 5 816 30 69 0 0 chr4 30376234 30376292 -125253828 + AT_rich Low_complexity Low_complexity 1 58 0 5 816 449 138 0 12 chr4 30377199 30377280 -125252840 + (TTTTC)n Simple_repeat Simple_repeat 5 84 0 5 816 359 137 0 0 chr4 30377280 30377331 -125252789 - Lx3_Mus LINE L1 -477 6532 6482 5 816 241 318 0 11 chr4 30378885 30378974 -125251146 - L1MEc LINE L1 -5668 732 645 5 816 396 331 136 30 chr4 30379713 30380079 -125250041 + BLACKJACK DNA AcHobo 1002 1418 -1526 5 816 807 80 0 0 chr4 30380079 30380204 -125249916 + (TC)n Simple_repeat Simple_repeat 2 126 0 5 816 396 331 136 30 chr4 30380204 30380538 -125249582 + BLACKJACK DNA AcHobo 1419 1776 -1168 5 816 287 290 70 49 chr4 30380819 30381062 -125249058 + L1MC LINE L1 5559 5806 -527 5 816 405 0 0 0 chr4 30382637 30382682 -125247438 + (A)n Simple_repeat Simple_repeat 1 45 0 5 816 360 376 26 31 chr4 30382842 30383037 -125247083 + Tigger7 DNA MER2_type 71 264 -2227 5 816 290 324 182 0 chr4 30383184 30383286 -125246834 + Tigger7 DNA MER2_type 2283 2400 -91 5 816 396 82 0 0 chr4 30383286 30383347 -125246773 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 816 290 324 182 0 chr4 30383347 30383414 -125246706 + Tigger7 DNA MER2_type 2401 2482 -9 5 816 351 0 0 0 chr4 30383975 30384014 -125246106 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 816 268 389 25 58 chr4 30384037 30384157 -125245963 - RSINE1 SINE B4 -25 140 25 5 816 30 0 0 0 chr4 30384244 30384274 -125245846 + AT_rich Low_complexity Low_complexity 1 30 0 5 816 306 310 45 23 chr4 30384370 30384502 -125245618 - B1F SINE Alu -10 139 5 5 816 609 14 0 0 chr4 30385343 30385413 -125244707 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 816 21 82 0 0 chr4 30385677 30385726 -125244394 + AT_rich Low_complexity Low_complexity 1 49 0 5 816 1024 213 232 3 chr4 30386872 30387178 -125242942 + ORR1C1 LTR MaLR 1 376 -2 5 816 997 201 25 16 chr4 30388108 30388351 -125241769 - Lx4B LINE L1 -3 7055 6811 5 816 262 200 97 30 chr4 30388608 30388725 -125241395 - Lx9 LINE L1 0 7644 7518 5 816 396 0 0 0 chr4 30388725 30388769 -125241351 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 816 262 200 97 30 chr4 30388769 30388785 -125241335 - Lx9 LINE L1 -127 7517 7502 5 816 220 87 42 42 chr4 30389969 30390017 -125240103 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 5 816 252 122 0 0 chr4 30390026 30390067 -125240053 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 816 243 0 0 0 chr4 30391145 30391172 -125238948 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 816 924 81 0 0 chr4 30391172 30391295 -125238825 - B1_Mm SINE Alu -9 138 16 5 816 857 204 86 7 chr4 30391918 30392129 -125237991 + Lx3C LINE L1 6757 6994 -6 5 816 240 86 0 0 chr4 30392839 30392874 -125237246 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 816 441 374 40 11 chr4 30393502 30393775 -125236345 - B4A SINE B4 -8 284 4 5 816 27 49 0 0 chr4 30394765 30394806 -125235314 + AT_rich Low_complexity Low_complexity 1 41 0 5 816 2851 300 75 18 chr4 30395210 30396217 -125233903 + RMER1C Other Other 374 1206 -136 5 816 510 57 0 0 chr4 30396217 30396287 -125233833 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 5 816 2851 285 85 17 chr4 30396287 30396409 -125233711 + RMER1C Other Other 1207 1340 -2 5 816 357 24 0 0 chr4 30396875 30396917 -125233203 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 816 1383 172 107 27 chr4 30397083 30397413 -125232707 + RMER16 LTR ERVK 1 533 0 5 816 396 0 0 0 chr4 30397531 30397575 -125232545 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 816 4995 39 0 0 chr4 30397587 30398181 -125231939 - L1Md_T LINE L1 -1 6581 5988 5 816 1932 127 88 3 chr4 30398184 30398523 -125231597 - Lx3B LINE L1 -715 6258 5891 5 816 1028 90 0 52 chr4 30399206 30399359 -125230761 + B1_Mm SINE Alu 2 146 -1 5 816 450 0 0 0 chr4 30399359 30399409 -125230711 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 5 816 29 28 0 0 chr4 30399523 30399559 -125230561 + AT_rich Low_complexity Low_complexity 1 36 0 5 816 498 331 73 5 chr4 30399559 30399750 -125230370 - Lx8 LINE L1 -151 7322 7119 5 816 1450 332 87 15 chr4 30399778 30400667 -125229453 - Lx8 LINE L1 -409 7064 6112 5 816 277 353 71 13 chr4 30400887 30401111 -125229009 - Lx8 LINE L1 -65 5782 5546 5 816 661 271 21 0 chr4 30401140 30401284 -125228836 - B1_Mur2 SINE Alu -1 148 2 5 816 900 339 31 35 chr4 30401330 30401615 -125228505 - Lx8 LINE L1 -332 5548 5261 5 816 489 17 0 0 chr4 30401615 30401673 -125228447 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 816 900 339 31 35 chr4 30401673 30402124 -125227996 - Lx8 LINE L1 -620 5260 4817 5 816 596 315 19 51 chr4 30402136 30402350 -125227770 + B3 SINE B2 6 212 -4 5 816 441 294 134 31 chr4 30402366 30402454 -125227666 - Lx8 LINE L1 -1052 4828 4737 5 816 192 40 0 0 chr4 30402454 30402479 -125227641 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 816 441 294 134 31 chr4 30402479 30402535 -125227585 - Lx8 LINE L1 -1144 4736 4646 5 816 234 0 0 0 chr4 30402535 30402561 -125227559 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 816 489 288 99 17 chr4 30402561 30402928 -125227192 - Lx8 LINE L1 -1235 4645 4263 5 816 1213 221 114 27 chr4 30403183 30403346 -125226774 - ORR1D1 LTR MaLR -51 323 165 5 816 387 0 0 0 chr4 30403346 30403389 -125226731 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 816 180 0 0 0 chr4 30403389 30403408 -125226712 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 816 1213 221 114 27 chr4 30403408 30403540 -125226580 - ORR1D1 LTR MaLR -210 164 2 5 816 201 164 36 18 chr4 30403793 30403849 -125226271 + A-rich Low_complexity Low_complexity 6 62 0 5 816 219 36 0 0 chr4 30404802 30404830 -125225290 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 5 816 3411 75 11 2 chr4 30405250 30405717 -125224403 + L1_Mus3 LINE L1 6168 6638 0 5 816 280 307 53 45 chr4 30405766 30405824 -125224296 - MLT1A LTR MaLR -232 142 80 5 816 446 0 19 0 chr4 30405834 30405888 -125224232 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 5 816 1032 96 14 0 chr4 30405888 30406023 -125224097 - B1_Mur4 SINE Alu -12 138 2 5 816 280 307 53 45 chr4 30406023 30406097 -125224023 - MLT1A LTR MaLR -295 79 9 5 816 786 200 0 0 chr4 30406446 30406517 -125223603 + A-rich Low_complexity Low_complexity 1 71 0 5 816 1233 101 0 0 chr4 30406517 30406696 -125223424 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 816 786 200 0 0 chr4 30406696 30406804 -125223316 + A-rich Low_complexity Low_complexity 72 179 0 5 816 3966 100 2 4 chr4 30406807 30407585 -125222535 - L1_Mus4 LINE L1 -604 6032 5259 5 816 854 159 12 6 chr4 30407587 30407758 -125222362 + L1_Mus4 LINE L1 6464 6635 -1 5 816 271 303 186 54 chr4 30407875 30408133 -125221987 - L2 LINE L2 -562 2857 2566 5 817 810 296 75 41 chr4 30408719 30409162 -125220958 - MT2A LTR ERVL -4 529 72 5 817 340 295 0 0 chr4 30409087 30409182 -125220938 - MTE2b LTR MaLR -233 146 52 5 817 429 20 0 0 chr4 30410631 30410681 -125219439 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 817 358 318 95 0 chr4 30411447 30411573 -125218547 + ID_B1 SINE B4 84 221 -3 5 817 322 78 0 0 chr4 30412114 30412165 -125217955 - L1_Mus2 LINE L1 -1 6565 6515 5 817 477 127 0 0 chr4 30413538 30413617 -125216503 + (CAGA)n Simple_repeat Simple_repeat 1 79 0 5 817 459 0 0 0 chr4 30413905 30413956 -125216164 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 817 2762 164 29 10 chr4 30414047 30414559 -125215561 + Lx2 LINE L1 6474 6995 -2 5 817 1644 36 0 0 chr4 30414561 30414753 -125215367 + B2_Mm1t SINE B2 1 192 -1 5 817 1927 236 27 5 chr4 30415285 30415690 -125214430 + MTD LTR MaLR 1 414 -5 5 817 3415 231 62 62 chr4 30415741 30416723 -125213397 + MTD-int LTR MaLR 5 986 -272 5 817 4156 108 2 31 chr4 30416731 30417371 -125212749 - Lx LINE L1 -6 6648 6028 5 817 1065 151 102 13 chr4 30417377 30417612 -125212508 - Lx3A LINE L1 -7 6974 6719 5 817 424 290 75 22 chr4 30417665 30417679 -125212441 - ID_B1 SINE B4 0 224 212 6 817 186 43 0 0 chr4 30417679 30417702 -125212418 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 817 424 290 75 22 chr4 30417702 30417821 -125212299 - ID_B1 SINE B4 -13 211 84 6 817 324 0 0 0 chr4 30419732 30419768 -125210352 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 817 257 235 129 0 chr4 30420372 30420457 -125209663 + BC1_Mm scRNA scRNA 16 111 -41 6 817 27 29 0 0 chr4 30421411 30421445 -125208675 + AT_rich Low_complexity Low_complexity 1 34 0 6 817 438 371 34 19 chr4 30421802 30422008 -125208112 + B3 SINE B2 8 216 0 6 817 577 306 60 0 chr4 30422189 30422342 -125207778 - L1MB3 LINE L1 -284 5899 5745 6 817 378 0 0 0 chr4 30422342 30422384 -125207736 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 817 577 311 59 0 chr4 30422384 30422494 -125207626 - L1MB3 LINE L1 -427 5744 5622 6 817 2125 200 28 5 chr4 30422905 30423341 -125206779 - L1_Mus3 LINE L1 -322 6316 5871 6 817 290 123 18 0 chr4 30423459 30423516 -125206604 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 817 653 139 23 0 chr4 30423519 30423692 -125206428 + CT-rich Low_complexity Low_complexity 2 178 0 6 817 24 0 0 0 chr4 30424025 30424049 -125206071 + AT_rich Low_complexity Low_complexity 1 24 0 6 817 21 36 0 0 chr4 30428774 30428802 -125201318 + AT_rich Low_complexity Low_complexity 1 28 0 6 817 360 43 0 0 chr4 30428858 30428904 -125201216 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 817 24 32 0 0 chr4 30429604 30429635 -125200485 + AT_rich Low_complexity Low_complexity 1 31 0 6 817 1131 261 90 10 chr4 30429897 30430284 -125199836 + MTD LTR MaLR 2 419 0 6 817 217 81 31 46 chr4 30430667 30430732 -125199388 + T-rich Low_complexity Low_complexity 2 65 0 6 817 29 28 0 0 chr4 30430959 30430995 -125199125 + AT_rich Low_complexity Low_complexity 1 36 0 6 817 4696 107 13 8 chr4 30432052 30432769 -125197351 - L1Md_F2 LINE L1 -1 6581 5862 6 817 2661 42 165 0 chr4 30432762 30433119 -125197001 - L1Md_T LINE L1 0 6582 6167 6 817 27921 90 9 11 chr4 30433119 30434821 -125195299 - L1_Mm LINE L1 -27 5856 4134 6 817 726 12 0 0 chr4 30434821 30434904 -125195216 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 817 27921 90 9 11 chr4 30434904 30437228 -125192892 - L1_Mm LINE L1 -1750 4133 1839 6 817 3320 94 2 2 chr4 30439363 30439841 -125190279 + L1_Mur1 LINE L1 3857 4334 -1552 6 817 225 373 36 36 chr4 30440087 30440279 -125189841 + MIR SINE MIR 22 213 -49 6 817 940 330 145 38 chr4 30440476 30441256 -125188864 - Lx8 LINE L1 -406 7067 6205 6 817 722 299 9 5 chr4 30441266 30441481 -125188639 - B3 SINE B2 0 216 1 6 817 404 298 87 16 chr4 30441490 30441674 -125188446 - B3A SINE B2 0 198 2 6 817 920 278 208 52 chr4 30442098 30442583 -125187537 - RMER4B LTR ERVK -8 577 17 6 817 1166 317 53 50 chr4 30442592 30443442 -125186678 - Lx8 LINE L1 -127 5720 4846 6 817 1020 99 111 0 chr4 30443442 30443604 -125186516 + L1_Mus1 LINE L1 6388 6567 0 6 817 1166 314 60 58 chr4 30443604 30443807 -125186313 - Lx8 LINE L1 -1009 4871 4643 6 817 832 67 115 36 chr4 30443834 30443973 -125186147 - L1Md_F2 LINE L1 -25 6557 6408 6 817 11978 16 0 3 chr4 30444063 30446145 -125183975 - L1Md_A LINE L1 0 6582 4507 6 817 7518 68 17 1 chr4 30446121 30447633 -125182487 - L1Md_F2 LINE L1 -161 6421 4883 6 817 457 75 3 7 chr4 30447623 30447698 -125182422 + L1Md_F2 LINE L1 4835 4914 -969 6 817 842 286 96 38 chr4 30447723 30448336 -125181784 - L1_Mur3 LINE L1 -1251 4629 3981 6 817 21 36 0 0 chr4 30449426 30449454 -125180666 + AT_rich Low_complexity Low_complexity 1 28 0 6 817 348 287 8 32 chr4 30450616 30450742 -125179378 + RMER1B Other Other 386 508 -558 6 817 572 221 79 6 chr4 30450751 30450928 -125179192 + RMER1B Other Other 872 1061 -5 6 817 397 213 30 45 chr4 30451254 30451387 -125178733 - Lx7 LINE L1 -1 7695 7565 6 817 378 300 99 14 chr4 30451415 30451638 -125178482 + L1M2 LINE L1 3689 3930 -2213 6 817 1048 260 48 88 chr4 30451636 30452134 -125177986 - Lx7 LINE L1 -117 7579 7102 6 817 4863 40 0 12 chr4 30452192 30452746 -125177374 - L1Md_F2 LINE L1 -414 6168 5621 6 817 2407 96 134 14 chr4 30452746 30453170 -125176950 - IAPLTR2_Mm LTR ERVK 0 475 1 6 817 4863 52 0 17 chr4 30453170 30453267 -125176853 - L1Md_F2 LINE L1 -263 5620 5524 6 817 3449 61 0 11 chr4 30453267 30453718 -125176402 + L1Md_F2 LINE L1 6137 6582 0 6 817 2636 69 0 0 chr4 30455005 30455340 -125174780 + L1Md_F3 LINE L1 5252 5586 -297 6 817 7825 51 4 1 chr4 30455340 30456321 -125173799 + L1Md_F3 LINE L1 5587 6570 -14 6 817 198 0 0 0 chr4 30456385 30456407 -125173713 + (A)n Simple_repeat Simple_repeat 1 22 0 6 817 542 15 0 15 chr4 30456739 30456807 -125173313 + (TATG)n Simple_repeat Simple_repeat 2 68 0 6 817 22 88 0 0 chr4 30457071 30457128 -125172992 + AT_rich Low_complexity Low_complexity 1 57 0 6 817 211 245 31 41 chr4 30457480 30457578 -125172542 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 817 518 280 92 18 chr4 30457737 30457966 -125172154 + L1M2 LINE L1 3813 4058 -2085 6 817 633 66 0 0 chr4 30458282 30458373 -125171747 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 817 261 139 0 0 chr4 30459900 30459943 -125170177 + (GGA)n Simple_repeat Simple_repeat 3 45 0 6 817 6773 31 0 0 chr4 30460136 30460936 -125169184 - L1Md_A LINE L1 0 6582 5783 6 817 32215 23 0 0 chr4 30460936 30465417 -125164703 - L1Md_T LINE L1 0 6582 2102 6 817 804 137 7 0 chr4 30465397 30465550 -125164570 + L1_Mm LINE L1 1950 2103 -3780 6 817 875 288 78 21 chr4 30465543 30466433 -125163687 - L1_Rod LINE L1 -4028 1819 880 6 817 1367 283 27 21 chr4 30468487 30468863 -125161257 - MTD LTR MaLR -38 381 4 6 817 1137 29 0 0 chr4 30468897 30469034 -125161086 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 817 553 303 13 25 chr4 30469308 30469467 -125160653 + RSINE1 SINE B4 8 164 -1 6 817 996 301 92 18 chr4 30469485 30469942 -125160178 - Lx6 LINE L1 -5 7455 6965 6 817 1296 231 76 17 chr4 30469967 30470323 -125159797 - Lx6 LINE L1 -564 6896 6520 6 817 940 279 22 22 chr4 30470323 30470601 -125159519 - Lx6 LINE L1 -1196 6264 5987 6 817 602 353 27 9 chr4 30470685 30470908 -125159212 + B4A SINE B4 64 290 -2 6 817 435 68 0 0 chr4 30470945 30471004 -125159116 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 817 357 43 0 0 chr4 30471475 30471522 -125158598 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 817 570 86 0 0 chr4 30471522 30471602 -125158518 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 817 1069 260 65 137 chr4 30471603 30472216 -125157904 - Lx9 LINE L1 -28 7616 6929 6 817 1047 94 0 0 chr4 30472368 30472517 -125157603 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 6 817 271 341 215 8 chr4 30472582 30472712 -125157408 + ID_B1 SINE B4 67 223 -1 6 817 1245 103 0 15 chr4 30473305 30473511 -125156609 + L1_Mus4 LINE L1 6434 6636 0 6 817 21 0 0 0 chr4 30473511 30473532 -125156588 + AT_rich Low_complexity Low_complexity 1 21 0 6 817 681 240 65 32 chr4 30474154 30474339 -125155781 + Lx5 LINE L1 6860 7050 0 6 817 300 95 0 0 chr4 30474339 30474381 -125155739 - L1Md_T LINE L1 -339 6243 6202 6 817 1792 49 0 13 chr4 30474381 30474637 -125155483 + L1Md_F2 LINE L1 6338 6582 0 6 817 23 0 0 0 chr4 30475653 30475676 -125154444 + AT_rich Low_complexity Low_complexity 1 23 0 6 817 8376 32 0 1 chr4 30476430 30477622 -125152498 - L1Md_T LINE L1 0 6582 5392 6 817 25 0 0 0 chr4 30477846 30477871 -125152249 + AT_rich Low_complexity Low_complexity 1 25 0 6 817 1422 76 0 10 chr4 30479769 30479969 -125150151 - L1_Mus1 LINE L1 -1 6566 6369 6 817 34 65 0 0 chr4 30481265 30481327 -125148793 + AT_rich Low_complexity Low_complexity 1 62 0 6 817 313 203 354 19 chr4 30481526 30481687 -125148433 + B3 SINE B2 2 216 0 6 817 1132 75 0 0 chr4 30481740 30481887 -125148233 + B1_Mus1 SINE Alu 2 148 0 6 817 216 0 0 0 chr4 30481890 30481914 -125148206 + (A)n Simple_repeat Simple_repeat 1 24 0 6 817 22 35 0 0 chr4 30482677 30482706 -125147414 + AT_rich Low_complexity Low_complexity 1 29 0 6 817 228 200 12 70 chr4 30483420 30483506 -125146614 + T-rich Low_complexity Low_complexity 4 84 0 6 817 2672 200 132 2 chr4 30485979 30486616 -125143504 - RMER6D LTR ERVK 0 720 1 6 817 324 255 42 109 chr4 30486987 30487106 -125143014 + B3A SINE B2 6 116 -82 6 817 1906 211 78 44 chr4 30488576 30489169 -125140951 - RMER6C LTR ERVK 0 690 1 6 817 243 295 71 71 chr4 30489169 30489253 -125140867 + PB1 SINE Alu 33 116 -11 6 817 26 0 0 0 chr4 30489463 30489489 -125140631 + AT_rich Low_complexity Low_complexity 1 26 0 6 817 284 0 28 0 chr4 30490541 30490577 -125139543 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 817 1234 293 117 41 chr4 30491041 30491656 -125138464 + Lx7 LINE L1 7017 7678 -18 6 817 694 277 143 58 chr4 30491946 30492345 -125137775 + Lx9 LINE L1 6973 7405 -239 6 817 180 125 0 0 chr4 30492408 30492440 -125137680 + (CATA)n Simple_repeat Simple_repeat 4 35 0 6 817 22 0 0 0 chr4 30492815 30492837 -125137283 + AT_rich Low_complexity Low_complexity 1 22 0 6 817 539 276 89 13 chr4 30493862 30494097 -125136023 + RLTR18B LTR ERVK 24 276 -236 6 817 687 270 111 64 chr4 30494125 30494482 -125135638 + RLTR18B LTR ERVK 181 572 -44 6 817 587 129 102 167 chr4 30494566 30494752 -125135368 + Lx6 LINE L1 6718 6891 -569 6 817 290 259 35 0 chr4 30494758 30494790 -125135330 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 6 817 441 0 0 0 chr4 30494790 30494839 -125135281 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 817 290 259 35 0 chr4 30494839 30494922 -125135198 + (CAGA)n Simple_repeat Simple_repeat 4 90 0 6 817 185 154 0 37 chr4 30494937 30494991 -125135129 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 6 817 600 181 0 0 chr4 30495002 30495168 -125134952 + GA-rich Low_complexity Low_complexity 2 167 0 6 817 1625 273 65 16 chr4 30495168 30495660 -125134460 + Lx6 LINE L1 6934 7449 -11 6 817 3328 43 2 0 chr4 30495938 30496333 -125133787 + MTA_Mm LTR MaLR 1 396 0 6 817 2874 62 3 3 chr4 30496333 30496723 -125133397 + MTA_Mm-int LTR MaLR 1 390 -708 6 817 3894 59 0 19 chr4 30496723 30497239 -125132881 - L1_Mm LINE L1 -1129 4754 4249 6 817 1305 72 0 16 chr4 30497239 30497423 -125132697 + L1_Mm LINE L1 4075 4255 -1628 6 817 4299 67 2 9 chr4 30497409 30497978 -125132142 + L1Md_F2 LINE L1 5022 5586 -297 6 817 8172 45 3 0 chr4 30497979 30498971 -125131149 + L1Md_F2 LINE L1 5588 6582 0 6 817 4486 90 30 103 chr4 30498972 30499751 -125130369 + MTA_Mm-int LTR MaLR 377 1098 0 6 817 1924 48 4 0 chr4 30499751 30500000 -125130120 + MTA_Mm LTR MaLR 1 250 -146 6 817 1185 41 0 0 chr4 30500000 30500146 -125129974 + MTB LTR MaLR 255 400 0 1 817 27 0 0 0 chr4 30500351 30500378 -125129742 + AT_rich Low_complexity Low_complexity 1 27 0 2 817 225 0 0 0 chr4 30500610 30500635 -125129485 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 817 663 124 25 0 chr4 30501887 30502008 -125128112 - Lx LINE L1 0 6654 6531 4 817 8723 8 0 0 chr4 30503029 30504003 -125126117 - L1Md_T LINE L1 0 6582 5609 5 817 17552 31 0 0 chr4 30504003 30506131 -125123989 + L1_Mm LINE L1 2525 4652 -1231 6 817 1757 220 162 30 chr4 30506385 30506909 -125123211 - RMER19B LTR ERVK -1 901 309 7 817 8551 21 0 0 chr4 30507290 30508864 -125121256 - L1Md_T LINE L1 0 6582 5009 8 817 382 263 8 17 chr4 30510066 30510186 -125119934 + GA-rich Low_complexity Low_complexity 5 123 0 9 817 4331 34 38 0 chr4 30512073 30512598 -125117522 + L1Md_F3 LINE L1 6026 6570 -14 1 817 29 28 0 0 chr4 30513337 30513373 -125116747 + AT_rich Low_complexity Low_complexity 1 36 0 1 817 586 178 36 29 chr4 30513487 30513626 -125116494 - Lx LINE L1 -2 6974 6835 1 817 5377 100 13 5 chr4 30514870 30515637 -125114483 - Lx LINE L1 -6 6648 5876 1 817 559 274 29 110 chr4 30516444 30516653 -125113467 - B3A SINE B2 -2 193 2 1 817 243 0 0 0 chr4 30516655 30516682 -125113438 + (A)n Simple_repeat Simple_repeat 1 27 0 1 817 33 80 0 0 chr4 30516885 30516960 -125113160 + AT_rich Low_complexity Low_complexity 1 75 0 1 817 3998 128 48 2 chr4 30516962 30517589 -125112531 - Lx2 LINE L1 -11 6986 6331 1 817 318 285 175 0 chr4 30517626 30517763 -125112357 + RMER16 LTR ERVK 205 365 -168 1 817 679 261 49 49 chr4 30517771 30517863 -125112257 + RMER16 LTR ERVK 288 373 -160 1 817 250 24 71 0 chr4 30517863 30517905 -125112215 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 817 679 261 49 49 chr4 30517905 30518058 -125112062 + RMER16 LTR ERVK 374 532 -1 1 817 30 45 0 0 chr4 30518132 30518176 -125111944 + AT_rich Low_complexity Low_complexity 1 44 0 2 817 495 340 49 25 chr4 30518208 30518452 -125111668 - Lx7 LINE L1 -941 6755 6506 2 817 6153 144 14 97 chr4 30518472 30519435 -125110685 + L1_Mus3 LINE L1 217 1107 -5531 2 817 1992 40 12 0 chr4 30519435 30519683 -125110437 + L1Md_F2 LINE L1 6332 6582 0 2 817 28516 122 16 8 chr4 30519683 30525190 -125104930 + L1_Mus3 LINE L1 1108 6632 -6 2 817 243 0 0 0 chr4 30525277 30525304 -125104816 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 817 2612 81 3 11 chr4 30525494 30525855 -125104265 - L1Md_F2 LINE L1 -2 6580 6223 2 817 583 289 212 45 chr4 30527188 30527518 -125102602 + MTD LTR MaLR 1 385 -34 2 817 233 29 29 0 chr4 30530905 30530939 -125099181 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 817 212 195 0 0 chr4 30531121 30531162 -125098958 + L4 LINE RTE 1323 1363 -666 2 817 321 269 0 0 chr4 30531205 30531272 -125098848 + ID4 SINE ID 6 72 -11 2 817 366 42 0 0 chr4 30531632 30531680 -125098440 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 817 4441 175 28 48 chr4 30533023 30533923 -125096197 - Lx2 LINE L1 -3 6994 6113 3 817 189 331 46 66 chr4 30535638 30535790 -125094330 - MIR3 SINE MIR -45 163 15 3 817 297 333 26 9 chr4 30536001 30536116 -125094004 - PB1D10 SINE Alu 0 117 1 3 817 504 0 0 0 chr4 30536936 30536992 -125093128 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 817 261 342 97 41 chr4 30538267 30538462 -125091658 - RMER15 LTR ERVL -13 562 357 3 817 744 288 95 49 chr4 30538593 30538984 -125091136 - RMER15-int LTR ERVL -336 4663 4255 3 817 2361 211 47 36 chr4 30539002 30539559 -125090561 + Lx2B LINE L1 6124 6686 -314 3 817 226 214 0 0 chr4 30539554 30539610 -125090510 + Lx2B LINE L1 6943 6998 -2 3 818 1268 251 48 53 chr4 30539937 30540316 -125089804 + MTEb LTR MaLR 1 377 -2 3 818 1058 311 57 34 chr4 30540339 30540746 -125089374 - RMER15-int LTR ERVL -1248 3751 3336 3 818 404 48 0 0 chr4 30542149 30542211 -125087909 + L1_Mus3 LINE L1 6575 6636 -2 3 818 272 372 116 8 chr4 30542494 30542735 -125087385 - RMER15-int LTR ERVL -4386 613 347 3 818 741 282 11 59 chr4 30542741 30543012 -125087108 - Lx9 LINE L1 -431 7213 6956 3 818 370 348 26 87 chr4 30543063 30543293 -125086827 - RMER15 LTR ERVL -24 551 336 3 818 627 112 0 0 chr4 30543891 30543998 -125086122 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 818 400 353 68 65 chr4 30544345 30544669 -125085451 + MLT1E LTR MaLR 314 638 -15 4 818 1362 56 0 0 chr4 30546350 30546530 -125083590 - ORR1A0 LTR MaLR -166 180 1 4 818 7831 80 6 3 chr4 30546530 30548274 -125081846 + L1Md_F2 LINE L1 4812 6561 -21 4 818 816 11 0 0 chr4 30548343 30548436 -125081684 + (GAA)n Simple_repeat Simple_repeat 2 94 0 4 818 347 335 51 6 chr4 30548438 30548615 -125081505 + Lx7 LINE L1 2158 2342 -3538 4 818 1611 226 102 45 chr4 30548612 30549172 -125080948 + Lx7 LINE L1 4098 4689 -1191 4 818 1187 287 48 35 chr4 30549789 30550436 -125079684 + Lx7 LINE L1 4675 5329 -551 4 818 16563 57 1 5 chr4 30550435 30553127 -125076993 + L1Md_F2 LINE L1 3758 6435 -147 4 818 34 42 0 0 chr4 30553131 30553179 -125076941 + AT_rich Low_complexity Low_complexity 1 48 0 4 818 854 254 66 7 chr4 30553189 30553463 -125076657 + Lx7 LINE L1 5318 5607 -273 4 818 518 170 32 0 chr4 30553468 30553562 -125076558 + MTC LTR MaLR 2 98 -323 4 818 607 241 27 5 chr4 30553564 30553798 -125076322 - Lx4B LINE L1 -7 7051 6720 4 818 1356 223 67 3 chr4 30553798 30554095 -125076025 + MTC LTR MaLR 106 421 0 4 818 2433 335 78 36 chr4 30554118 30555770 -125074350 + Lx7 LINE L1 5643 7363 -333 4 818 2860 179 196 85 chr4 30555780 30556581 -125073539 + RMER19B LTR ERVK 1 890 -12 5 818 246 62 0 0 chr4 30556613 30556645 -125073475 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 5 818 430 254 91 0 chr4 30557447 30557557 -125072563 - ID_B1 SINE B4 0 224 105 5 818 17484 20 0 2 chr4 30557663 30559720 -125070400 + L1Md_T LINE L1 3535 5586 -297 5 818 8409 36 0 0 chr4 30559720 30560716 -125069404 + L1Md_T LINE L1 5587 6582 0 5 818 9701 34 0 0 chr4 30560716 30561884 -125068236 + L1_Mm LINE L1 4215 5382 -501 5 818 766 98 0 22 chr4 30561884 30562019 -125068101 + L1Md_F3 LINE L1 6452 6583 -1 5 818 322 331 121 16 chr4 30562899 30563089 -125067031 - Charlie25 DNA MER1_type -1858 666 457 5 818 411 21 0 0 chr4 30563136 30563184 -125066936 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 818 23 0 0 0 chr4 30564161 30564184 -125065936 + AT_rich Low_complexity Low_complexity 1 23 0 5 818 19400 115 24 16 chr4 30564184 30564819 -125065301 + L1_Mm LINE L1 2415 3061 -2822 5 818 1599 9 0 0 chr4 30564819 30565042 -125065078 + (GAA)n Simple_repeat Simple_repeat 1 223 0 6 818 19400 115 24 16 chr4 30565042 30567552 -125062568 + L1_Mm LINE L1 3062 5585 -298 5 818 8232 43 0 0 chr4 30567552 30568547 -125061573 + L1Md_A LINE L1 5587 6581 -1 6 818 330 158 0 0 chr4 30568560 30568617 -125061503 + L1_Mur2 LINE L1 5005 5061 -816 6 818 32 43 0 0 chr4 30569378 30569424 -125060696 + AT_rich Low_complexity Low_complexity 1 46 0 6 818 240 235 0 0 chr4 30569488 30569539 -125060581 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 818 1129 252 132 34 chr4 30569543 30569624 -125060496 - Lx9 LINE L1 -128 7516 7440 6 818 6075 118 21 15 chr4 30569624 30570576 -125059544 + RMER17B LTR ERVK 1 958 0 6 818 1129 252 132 34 chr4 30570576 30570909 -125059211 - Lx9 LINE L1 -205 7439 7061 6 818 268 311 67 59 chr4 30570911 30571181 -125058939 - RLTR15 LTR ERVK -16 343 72 6 818 608 91 9 26 chr4 30571183 30571296 -125058824 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 6 818 268 254 51 26 chr4 30571384 30571501 -125058619 - Lx9 LINE L1 -1605 6039 5920 6 818 534 314 96 34 chr4 30571507 30571715 -125058405 - B4A SINE B4 -66 226 6 6 818 37596 45 6 4 chr4 30571920 30578253 -125051867 - L1Md_A LINE L1 -1 6584 142 7 818 639 293 125 12 chr4 30578961 30579282 -125050838 - ORR1E LTR MaLR -2 357 1 7 818 5615 153 42 13 chr4 30579689 30580714 -125049406 - Lx3B LINE L1 -6 6967 5913 7 818 9981 129 41 16 chr4 30580715 30582478 -125047642 - L1_Mur1 LINE L1 -270 5616 3811 7 818 393 159 0 0 chr4 30582475 30582538 -125047582 + L1_Mur1 LINE L1 677 739 -6243 7 818 23 0 0 0 chr4 30584086 30584109 -125046011 + AT_rich Low_complexity Low_complexity 1 23 0 7 818 1200 111 0 0 chr4 30584532 30584712 -125045408 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 818 343 298 142 35 chr4 30585232 30585458 -125044662 + MLT1A0 LTR MaLR 116 365 0 7 818 447 95 0 0 chr4 30586296 30586370 -125043750 + (TAAAA)n Simple_repeat Simple_repeat 4 77 0 7 818 227 325 12 12 chr4 30587212 30587293 -125042827 + PB1D7 SINE Alu 18 98 -22 7 818 296 347 41 0 chr4 30587863 30587961 -125042159 + B3A SINE B2 2 103 -95 8 818 1935 60 0 4 chr4 30587971 30588223 -125041897 + L1Md_F2 LINE L1 6332 6582 0 8 818 182 191 21 0 chr4 30588312 30588359 -125041761 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 818 291 394 7 59 chr4 30588366 30588462 -125041658 + B4 SINE B4 70 166 -126 8 818 1228 219 159 3 chr4 30588462 30588783 -125041337 + ORR1D1 LTR MaLR 1 371 -3 8 818 291 394 7 59 chr4 30588783 30588821 -125041299 + B4 SINE B4 167 197 -95 8 818 24 67 0 0 chr4 30589387 30589432 -125040688 + AT_rich Low_complexity Low_complexity 1 45 0 8 818 1179 41 0 7 chr4 30590606 30590753 -125039367 + B1_Mus2 SINE Alu 2 147 0 8 818 24 0 0 0 chr4 30590753 30590777 -125039343 + AT_rich Low_complexity Low_complexity 1 24 0 8 818 30 27 0 0 chr4 30590977 30591014 -125039106 + AT_rich Low_complexity Low_complexity 1 37 0 8 818 26 30 0 0 chr4 30591200 30591233 -125038887 + AT_rich Low_complexity Low_complexity 1 33 0 8 818 651 329 90 34 chr4 30591708 30592029 -125038091 - MLT1B LTR MaLR 0 390 52 9 818 635 0 13 0 chr4 30593353 30593428 -125036692 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 9 818 404 250 94 8 chr4 30594099 30594216 -125035904 - Lx8 LINE L1 -374 7099 6973 9 818 207 0 0 0 chr4 30594288 30594311 -125035809 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 818 34 65 0 0 chr4 30594577 30594639 -125035481 + AT_rich Low_complexity Low_complexity 1 62 0 9 818 216 0 0 0 chr4 30595062 30595086 -125035034 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 818 35 24 0 0 chr4 30595263 30595305 -125034815 + AT_rich Low_complexity Low_complexity 1 42 0 9 818 884 301 78 10 chr4 30595559 30595955 -125034165 - Lx7 LINE L1 -384 7312 6890 9 818 779 256 84 42 chr4 30595961 30596247 -125033873 - L1_Mur3 LINE L1 -131 5749 5452 9 818 512 304 114 48 chr4 30596269 30596559 -125033561 - Lx7 LINE L1 -818 6878 6570 9 818 448 222 28 0 chr4 30597243 30597351 -125032769 + L1_Mur3 LINE L1 4234 4344 -1536 9 818 8454 27 0 0 chr4 30597358 30598651 -125031469 - L1Md_T LINE L1 0 6582 5290 1 818 687 277 11 0 chr4 30598687 30598871 -125031249 + Lx8 LINE L1 6970 7155 -318 1 818 317 302 82 16 chr4 30598916 30599098 -125031022 + L1M2 LINE L1 2759 2952 -3191 1 818 845 305 97 31 chr4 30599261 30599415 -125030705 + L1M2 LINE L1 3116 3296 -2847 1 818 397 287 29 7 chr4 30599415 30599552 -125030568 + B1F2 SINE Alu 5 144 -5 1 818 845 305 97 31 chr4 30599552 30600068 -125030052 + L1M2 LINE L1 3297 3830 -2313 1 818 3314 154 72 17 chr4 30600110 30600752 -125029368 - Lx2B LINE L1 -5 6995 6319 1 818 289 236 90 9 chr4 30600856 30600967 -125029153 + L1M2 LINE L1 5458 5577 -612 1 818 492 72 0 0 chr4 30601007 30601076 -125029044 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 818 808 286 78 6 chr4 30601113 30601447 -125028673 + L1MA6 LINE L1 5738 6095 -205 1 818 890 290 100 47 chr4 30601448 30601818 -125028302 - MTE2a LTR MaLR -2 417 19 1 818 27 49 0 0 chr4 30601867 30601908 -125028212 + AT_rich Low_complexity Low_complexity 1 41 0 1 818 23 0 0 0 chr4 30602005 30602028 -125028092 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 330 123 0 0 chr4 30603690 30603747 -125026373 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 818 620 306 5 9 chr4 30604716 30604927 -125025193 - B3 SINE B2 -6 210 1 1 818 414 0 0 0 chr4 30605000 30605046 -125025074 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 818 510 309 24 0 chr4 30605268 30605391 -125024729 - RSINE1 SINE B4 -31 134 9 1 818 1455 207 25 63 chr4 30605511 30605691 -125024429 + ORR1C2 LTR MaLR 1 167 -217 1 818 513 0 0 0 chr4 30605691 30605748 -125024372 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 818 1455 207 25 63 chr4 30605748 30605964 -125024156 + ORR1C2 LTR MaLR 168 382 -2 1 818 1073 235 70 33 chr4 30605966 30606239 -125023881 + ORR1C1 LTR MaLR 96 378 0 1 818 6051 75 12 5 chr4 30609999 30610804 -125019316 - L1Md_F2 LINE L1 -12 6570 5760 1 818 302 200 0 0 chr4 30611089 30611149 -125018971 + RMER1C Other Other 179 238 -1104 1 818 759 86 0 0 chr4 30611151 30611268 -125018852 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 818 236 355 0 0 chr4 30611453 30611529 -125018591 + RMER1C Other Other 62 137 -1205 1 818 1707 309 53 72 chr4 30611566 30612376 -125017744 + RMER1C Other Other 379 1118 -224 1 818 611 43 16 41 chr4 30612382 30612503 -125017617 + (TTTTTG)n Simple_repeat Simple_repeat 2 119 0 1 818 959 151 0 0 chr4 30612505 30612651 -125017469 - B1_Mus2 SINE Alu 0 147 2 1 818 792 208 120 0 chr4 30612654 30612846 -125017274 + RMER1C Other Other 1120 1334 -8 1 818 345 47 0 0 chr4 30615355 30615398 -125014722 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 818 1094 110 45 28 chr4 30616603 30616780 -125013340 - B2_Mm2 SINE B2 -14 181 2 1 818 22 0 0 0 chr4 30617238 30617260 -125012860 + AT_rich Low_complexity Low_complexity 1 22 0 1 818 229 295 72 21 chr4 30618318 30618415 -125011705 + PB1D10 SINE Alu 1 102 -15 1 818 24 0 0 0 chr4 30618652 30618676 -125011444 + AT_rich Low_complexity Low_complexity 1 24 0 1 818 275 172 50 33 chr4 30618697 30618757 -125011363 - ID_B1 SINE B4 -19 205 145 1 818 370 262 70 45 chr4 30618949 30619149 -125010971 - Lx8 LINE L1 -1032 6441 6237 1 818 419 296 51 23 chr4 30619397 30619573 -125010547 - Lx9 LINE L1 -1689 5955 5775 1 818 1854 262 64 44 chr4 30619589 30620367 -125009753 - Lx9 LINE L1 -1150 6494 5701 1 818 363 23 0 0 chr4 30620625 30620669 -125009451 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 818 3335 187 14 22 chr4 30621807 30622474 -125007646 - Lx LINE L1 -7 6647 5987 1 818 3687 138 16 8 chr4 30622474 30623329 -125006791 - Lx2A1 LINE L1 -929 6079 5218 1 818 320 157 11 0 chr4 30624114 30624180 -125005940 + Lx2B LINE L1 6366 6436 -564 1 818 391 325 23 39 chr4 30624197 30624325 -125005795 + B1F1 SINE Alu 6 131 -18 1 818 467 17 17 0 chr4 30624342 30624402 -125005718 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 818 555 319 65 12 chr4 30624504 30624852 -125005268 - ERVL-B4-int LTR ERVL -625 5089 4665 1 818 536 97 0 11 chr4 30624859 30624953 -125005167 + (TC)n Simple_repeat Simple_repeat 1 93 0 1 818 413 326 50 14 chr4 30625097 30625237 -125004883 - B4A SINE B4 -146 146 2 1 818 21 0 0 0 chr4 30625485 30625506 -125004614 + AT_rich Low_complexity Low_complexity 1 21 0 1 818 230 288 75 7 chr4 30626916 30627063 -125003057 + L1M5 LINE L1 5575 5731 -393 1 818 237 182 0 0 chr4 30627138 30627193 -125002927 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 818 623 40 40 0 chr4 30627981 30628080 -125002040 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 1 818 380 347 16 39 chr4 30628097 30628226 -125001894 - B1F1 SINE Alu -18 131 6 1 818 402 21 0 0 chr4 30628441 30628488 -125001632 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 1 818 1418 189 91 0 chr4 30628512 30628798 -125001322 - Lx2B LINE L1 -507 6493 6182 1 818 788 97 0 20 chr4 30628800 30628947 -125001173 + (TC)n Simple_repeat Simple_repeat 1 144 0 1 818 673 206 7 0 chr4 30629898 30630044 -125000076 - Lx2B LINE L1 -802 6195 6049 1 818 2500 174 51 6 chr4 30630044 30630518 -124999602 + Lx2B LINE L1 6502 6996 -4 1 818 251 268 14 0 chr4 30630698 30630769 -124999351 + MLT2B4 LTR ERVL 40 111 -445 1 818 835 80 0 9 chr4 30631408 30631522 -124998598 - L1_Mus3 LINE L1 -251 6387 6275 1 818 1694 210 146 5 chr4 30631522 30631805 -124998315 + RMER1C Other Other 894 1224 -118 1 818 732 23 0 0 chr4 30631805 30631891 -124998229 + (TTC)n Simple_repeat Simple_repeat 2 87 0 1 818 1694 210 146 5 chr4 30631891 30631990 -124998130 + RMER1C Other Other 1225 1330 -12 1 818 3800 244 54 120 chr4 30632414 30633977 -124996143 + RMER1A Other Other 1 867 -163 1 818 705 82 0 0 chr4 30633977 30634087 -124996033 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 818 3800 220 47 118 chr4 30634087 30634203 -124995917 + RMER1A Other Other 868 1013 -17 1 818 2604 140 58 6 chr4 30634223 30634691 -124995429 + Lx LINE L1 6144 6635 -19 1 818 1411 77 0 6 chr4 30634833 30635015 -124995105 + B2_Mm2 SINE B2 1 181 -14 1 818 2278 202 26 91 chr4 30635301 30635916 -124994204 - RMER15 LTR ERVL 0 575 1 1 818 2172 217 50 16 chr4 30636249 30636748 -124993372 - RLTR31A_Mm LTR ERVK 0 584 1 1 818 393 323 124 0 chr4 30636873 30637059 -124993061 + ID_B1 SINE B4 2 210 -14 1 818 306 0 0 0 chr4 30637644 30637678 -124992442 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 818 213 196 0 0 chr4 30641421 30641472 -124988648 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 818 1040 85 7 0 chr4 30643719 30643860 -124986260 - L1_Mus3 LINE L1 -368 6270 6129 1 818 2329 101 23 0 chr4 30643860 30644208 -124985912 + L1_Mus3 LINE L1 6276 6631 -7 1 818 1466 288 157 22 chr4 30644476 30645152 -124984968 + Lx7 LINE L1 6535 7301 -395 1 818 268 156 0 94 chr4 30645159 30645265 -124984855 + T-rich Low_complexity Low_complexity 2 97 0 1 818 304 311 36 6 chr4 30645909 30646074 -124984046 + L1_Mur3 LINE L1 2299 2468 -3412 1 818 304 297 21 32 chr4 30646306 30646400 -124983720 - B1_Mur2 SINE Alu -6 143 51 1 818 636 313 90 24 chr4 30646716 30646971 -124983149 - Lx8 LINE L1 -202 7271 7000 1 818 725 178 0 6 chr4 30646979 30647108 -124983012 + CT-rich Low_complexity Low_complexity 31 159 0 1 818 1371 62 0 0 chr4 30647108 30647286 -124982834 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 818 725 178 0 6 chr4 30647286 30647314 -124982806 + polypyrimidine Low_complexity Low_complexity 3 30 0 1 818 1070 77 28 0 chr4 30647442 30647585 -124982535 + B1_Mus2 SINE Alu 1 147 0 1 818 920 264 65 11 chr4 30648007 30648288 -124981832 - MTD LTR MaLR -14 405 118 1 818 1213 103 0 6 chr4 30648307 30648482 -124981638 - B2_Mm2 SINE B2 -2 193 20 1 818 194 91 0 29 chr4 30648684 30648718 -124981402 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 1 818 23 78 0 0 chr4 30648832 30648883 -124981237 + AT_rich Low_complexity Low_complexity 1 51 0 1 818 235 268 0 0 chr4 30649112 30649168 -124980952 - Lx7 LINE L1 -442 7254 7199 1 818 1922 277 30 17 chr4 30649249 30649789 -124980331 - Lx4A LINE L1 -182 7278 6732 1 818 1886 237 15 7 chr4 30649792 30650200 -124979920 - MTC LTR MaLR -8 413 3 1 818 1458 198 76 6 chr4 30650202 30650517 -124979603 - Lx4A LINE L1 -723 6737 6401 1 818 278 264 59 85 chr4 30650600 30650753 -124979367 + Lx9 LINE L1 6953 7101 -543 1 818 364 186 14 0 chr4 30650809 30650879 -124979241 - ORR1B1 LTR MaLR 0 394 324 1 818 6131 86 32 0 chr4 30650888 30651736 -124978384 - L1_Mus2 LINE L1 -2 6564 5690 1 818 11690 119 21 64 chr4 30651734 30653869 -124976251 - L1_Mus2 LINE L1 -738 5145 3104 1 818 1386 201 33 81 chr4 30653869 30654204 -124975916 - ORR1B1 LTR MaLR -73 321 3 1 818 342 0 0 0 chr4 30655045 30655083 -124975037 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 818 210 180 0 0 chr4 30655709 30655770 -124974350 + CT-rich Low_complexity Low_complexity 2 62 0 1 818 4074 204 65 61 chr4 30655900 30656923 -124973197 - Lx5 LINE L1 0 7050 6024 1 818 7386 172 21 9 chr4 30656945 30658238 -124971882 - Lx4A LINE L1 -1115 5943 4634 1 818 261 0 0 0 chr4 30658238 30658267 -124971853 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 818 7386 171 22 9 chr4 30658267 30658463 -124971657 - Lx4A LINE L1 -1244 4633 4428 1 818 1259 152 5 0 chr4 30658461 30658672 -124971448 + Lx4A LINE L1 4221 4432 -1445 1 818 189 0 0 0 chr4 30658683 30658704 -124971416 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 818 369 311 84 59 chr4 30659134 30659387 -124970733 + L1_Mur3 LINE L1 4317 4577 -1566 1 818 222 37 0 0 chr4 30659387 30659414 -124970706 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 818 559 298 34 7 chr4 30659414 30659649 -124970471 + L1_Mur3 LINE L1 4547 4817 -1326 1 818 28 48 0 0 chr4 30659706 30659748 -124970372 + AT_rich Low_complexity Low_complexity 1 42 0 1 818 1376 249 29 130 chr4 30659878 30660109 -124970011 + RMER20B LTR ERVK 76 279 -348 1 818 3514 134 16 2 chr4 30660109 30660661 -124969459 + Lx LINE L1 6085 6644 -10 1 818 1376 249 29 130 chr4 30660661 30660945 -124969175 + RMER20B LTR ERVK 280 539 -88 1 818 1086 86 0 0 chr4 30661044 30661195 -124968925 + (GAA)n Simple_repeat Simple_repeat 3 153 0 1 818 1826 150 116 118 chr4 30661419 30661745 -124968375 - RLTR23 LTR ERV1 0 430 106 1 818 703 0 23 0 chr4 30661745 30661832 -124968288 + (TTTTG)n Simple_repeat Simple_repeat 3 91 0 1 818 1826 150 116 118 chr4 30661832 30661936 -124968184 - RLTR23 LTR ERV1 -325 105 1 1 818 1431 156 260 16 chr4 30662051 30662417 -124967703 + RMER6B LTR ERVK 5 459 -2 1 818 336 298 48 40 chr4 30662745 30662871 -124967249 + Lx8 LINE L1 6183 6309 -1164 1 818 2096 195 136 60 chr4 30662888 30663698 -124966422 - RMER6C LTR ERVK 0 720 4 1 818 1206 366 69 36 chr4 30663705 30664613 -124965507 + Lx8 LINE L1 6329 7266 -207 1 818 4024 51 0 0 chr4 30664633 30665121 -124964999 + L1Md_F2 LINE L1 5907 6394 -188 1 818 7670 18 1 0 chr4 30665115 30666001 -124964119 + L1Md_T LINE L1 4700 5586 -297 2 818 8961 7 0 0 chr4 30666001 30666997 -124963123 + L1Md_T LINE L1 5587 6582 0 2 818 1471 47 0 10 chr4 30666999 30667194 -124962926 + L1Md_F2 LINE L1 6382 6574 -8 1 818 212 0 36 0 chr4 30667229 30667257 -124962863 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 818 2606 41 9 0 chr4 30668060 30668379 -124961741 + L1Md_F2 LINE L1 6247 6568 -14 2 818 828 52 0 0 chr4 30668400 30668516 -124961604 + L1_Mus2 LINE L1 6449 6564 -2 2 818 24 0 0 0 chr4 30668516 30668540 -124961580 + AT_rich Low_complexity Low_complexity 1 24 0 2 818 600 14 0 0 chr4 30669738 30669807 -124960313 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 818 183 359 0 15 chr4 30669925 30669990 -124960130 + L2b LINE L2 3299 3362 -13 2 102 5553 127 27 17 chr4 30670260 30671313 -124958807 + L1VL2 LINE L1 65 1129 -2486 2 819 348 24 0 0 chr4 30671347 30671388 -124958732 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 819 447 103 13 0 chr4 30672211 30672289 -124957831 + Lx3A LINE L1 6898 6976 -5 2 819 363 33 32 16 chr4 30672335 30672397 -124957723 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 819 534 16 0 0 chr4 30672474 30672537 -124957583 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 2 819 1485 34 0 0 chr4 30673637 30673816 -124956304 + (TTC)n Simple_repeat Simple_repeat 1 179 0 2 819 379 52 17 17 chr4 30673816 30673875 -124956245 + (TCC)n Simple_repeat Simple_repeat 3 61 0 2 819 180 0 0 0 chr4 30673883 30673903 -124956217 + (TTA)n Simple_repeat Simple_repeat 1 20 0 2 819 3416 178 54 6 chr4 30673903 30674548 -124955572 - Lx5 LINE L1 -7 7043 6368 2 819 891 199 82 16 chr4 30674548 30674939 -124955181 + Lx5 LINE L1 5903 6357 -693 2 819 1061 133 0 11 chr4 30675733 30675915 -124954205 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 819 407 248 0 9 chr4 30676103 30676209 -124953911 - L1_Mur3 LINE L1 -472 5408 5304 2 819 783 306 81 47 chr4 30676208 30676872 -124953248 + Lx9 LINE L1 5427 6101 -1372 2 819 873 229 444 27 chr4 30676913 30677069 -124953051 - ORR1D1 LTR MaLR -2 382 165 2 819 806 21 34 34 chr4 30677069 30677215 -124952905 + (GAGAA)n Simple_repeat Simple_repeat 5 150 0 2 819 873 234 42 42 chr4 30677215 30677367 -124952753 - ORR1D1 LTR MaLR -210 164 10 2 819 434 214 0 0 chr4 30677375 30677459 -124952661 - ORR1D1-int LTR MaLR 0 1370 1287 2 819 1226 263 15 9 chr4 30677459 30677789 -124952331 - Lx9 LINE L1 -642 7002 6671 2 819 451 279 10 0 chr4 30677783 30677887 -124952233 - Lx9 LINE L1 -1180 6464 6360 2 819 976 297 40 35 chr4 30677935 30678358 -124951762 + Lx9 LINE L1 7041 7465 -179 2 819 348 83 0 0 chr4 30678360 30678408 -124951712 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 819 1268 223 75 0 chr4 30678502 30678794 -124951326 - ORR1D-int LTR MaLR -66 1304 991 2 819 2421 263 53 39 chr4 30678776 30679471 -124950649 - ORR1D-int LTR MaLR -665 705 1 2 819 191 61 30 0 chr4 30679731 30679764 -124950356 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 819 498 33 0 0 chr4 30679918 30679978 -124950142 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 819 486 49 0 0 chr4 30680001 30680062 -124950058 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 819 1677 305 122 47 chr4 30680072 30680984 -124949136 - Lx7 LINE L1 -389 7307 6328 2 819 33 56 0 0 chr4 30681039 30681093 -124949027 + AT_rich Low_complexity Low_complexity 1 54 0 2 819 624 27 0 0 chr4 30683086 30683160 -124946960 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 819 29 0 0 0 chr4 30683585 30683614 -124946506 + AT_rich Low_complexity Low_complexity 1 29 0 2 819 1312 53 41 46 chr4 30683872 30684069 -124946051 - L1_Mus1 LINE L1 -1 6566 6371 2 819 392 270 197 18 chr4 30685023 30685337 -124944783 - L1MB2 LINE L1 -166 6014 5646 2 819 198 0 0 0 chr4 30685339 30685361 -124944759 + (T)n Simple_repeat Simple_repeat 1 22 0 2 819 560 219 8 15 chr4 30685381 30685511 -124944609 + Lx9 LINE L1 7263 7391 -253 2 819 1727 84 0 0 chr4 30685675 30685913 -124944207 + L1_Mm LINE L1 3454 3691 -2192 2 819 215 51 0 71 chr4 30685953 30685995 -124944125 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 2 819 555 92 0 0 chr4 30686738 30686825 -124943295 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 819 330 45 0 0 chr4 30686825 30686869 -124943251 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 819 226 283 16 16 chr4 30687395 30687456 -124942664 + PB1D10 SINE Alu 40 100 -17 2 819 351 44 0 0 chr4 30688729 30688774 -124941346 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 2 819 340 256 107 10 chr4 30689455 30689498 -124940622 - L1M2 LINE L1 -831 5469 5427 2 819 1085 40 19 26 chr4 30689498 30689652 -124940468 - L1Md_F2 LINE L1 -2 6580 6428 2 819 845 241 61 4 chr4 30689652 30689962 -124940158 - L1M2 LINE L1 -874 5426 5092 2 819 1599 219 72 7 chr4 30690316 30690761 -124939359 + RLTR28 LTR ERVL 49 522 -2 2 819 185 0 40 0 chr4 30691432 30691457 -124938663 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 819 23 0 0 0 chr4 30692203 30692226 -124937894 + AT_rich Low_complexity Low_complexity 1 23 0 2 819 243 0 0 0 chr4 30692507 30692534 -124937586 + (A)n Simple_repeat Simple_repeat 1 27 0 2 819 9805 2 0 0 chr4 30692703 30694492 -124935628 - L1Md_A LINE L1 0 6582 4794 2 819 6080 107 13 5 chr4 30694710 30696260 -124933860 + MusHAL1 LINE L1 4 1566 -1787 2 819 12561 170 20 24 chr4 30696257 30699396 -124930724 + Lx LINE L1 3495 6642 -12 2 819 534 31 0 0 chr4 30699396 30699460 -124930660 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 2 819 459 0 0 0 chr4 30699460 30699510 -124930610 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 2 819 993 168 0 0 chr4 30699510 30699774 -124930346 + GA-rich Low_complexity Low_complexity 1 264 0 2 819 233 314 14 14 chr4 30699803 30699874 -124930246 + B4 SINE B4 2 72 -220 2 819 1997 208 62 17 chr4 30700467 30700969 -124929151 + RMER4B LTR ERVK 17 585 0 2 819 264 30 0 0 chr4 30700992 30701025 -124929095 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 819 354 0 0 0 chr4 30701025 30701069 -124929051 - L1Md_F3 LINE L1 -19 6565 6522 2 819 216 0 0 0 chr4 30702366 30702390 -124927730 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 819 274 243 75 28 chr4 30703598 30703704 -124926416 + MIR SINE MIR 13 123 -139 2 819 471 35 0 0 chr4 30703921 30703978 -124926142 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 819 207 186 0 0 chr4 30704146 30704189 -124925931 + (TTG)n Simple_repeat Simple_repeat 3 45 0 2 819 246 327 74 43 chr4 30704613 30704776 -124925344 - MIRc SINE MIR -75 193 26 2 819 2649 48 33 3 chr4 30705119 30705455 -124924665 + ORR1A0 LTR MaLR 1 346 0 2 819 12269 55 12 101 chr4 30705455 30706212 -124923908 + ORR1A0-int LTR MaLR 1 781 -1011 2 819 3949 49 4 6 chr4 30706212 30706708 -124923412 + L1Md_F2 LINE L1 6088 6582 0 2 819 12269 55 12 101 chr4 30706708 30707917 -124922203 + ORR1A0-int LTR MaLR 782 1792 0 2 819 2522 37 30 9 chr4 30707917 30708248 -124921872 + ORR1A0 LTR MaLR 1 338 -8 2 819 382 302 72 16 chr4 30710163 30710382 -124919738 + MTE-int LTR MaLR 40 330 -1405 2 819 753 358 112 61 chr4 30710823 30711510 -124918610 + MTE-int LTR MaLR 769 1490 -90 2 819 363 105 35 0 chr4 30712184 30712244 -124917876 + (TTG)n Simple_repeat Simple_repeat 3 63 0 2 819 1158 49 7 0 chr4 30712244 30712388 -124917732 - B1_Mm SINE Alu 0 147 3 2 819 363 105 35 0 chr4 30712388 30712413 -124917707 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 819 236 267 0 167 chr4 30714115 30714223 -124915897 - RMER4B LTR ERVK -11 455 366 2 819 1007 244 111 18 chr4 30714259 30714618 -124915502 - RMER4B LTR ERVK -177 408 1 2 819 197 65 0 31 chr4 30714982 30715014 -124915106 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 819 283 307 67 38 chr4 30715722 30715827 -124914293 - MER77 LTR ERVL -480 127 20 2 819 204 200 0 0 chr4 30715912 30715947 -124914173 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 819 293 47 23 0 chr4 30715947 30715990 -124914130 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 819 351 0 0 0 chr4 30717574 30717613 -124912507 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 819 2688 131 18 36 chr4 30718273 30718717 -124911403 - Lx2 LINE L1 -1 6996 6561 2 819 21 57 0 0 chr4 30719639 30719674 -124910446 + AT_rich Low_complexity Low_complexity 1 35 0 2 819 1125 82 0 13 chr4 30720458 30720607 -124909513 + B1_Mus1 SINE Alu 2 148 0 2 819 215 79 26 0 chr4 30720613 30720651 -124909469 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 2 819 297 0 0 0 chr4 30721504 30721537 -124908583 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 819 343 288 39 16 chr4 30721648 30721771 -124908349 - MTE2b LTR MaLR -8 371 246 2 819 227 31 31 0 chr4 30722116 30722148 -124907972 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 819 274 360 43 46 chr4 30722245 30722525 -124907595 - Charlie24 DNA MER1_type -594 1856 1578 2 819 209 159 23 0 chr4 30722909 30722953 -124907167 + A-rich Low_complexity Low_complexity 2 46 0 2 819 521 256 62 23 chr4 30723067 30723243 -124906877 - Charlie24 DNA MER1_type -1189 1261 1079 2 819 22 70 0 0 chr4 30723933 30723976 -124906144 + AT_rich Low_complexity Low_complexity 1 43 0 2 819 210 362 49 24 chr4 30723992 30724074 -124906046 - L2b LINE L2 -35 3340 3257 2 819 7863 44 2 4 chr4 30724947 30725921 -124904199 - L1Md_F3 LINE L1 -14 6570 5599 2 819 846 245 20 0 chr4 30726075 30726275 -124903845 - B3 SINE B2 -11 205 2 2 819 547 277 95 63 chr4 30727077 30727362 -124902758 + MTC-int LTR MaLR 937 1230 -28 2 819 183 129 0 0 chr4 30727688 30727719 -124902401 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 819 23 33 0 0 chr4 30727967 30727997 -124902123 + AT_rich Low_complexity Low_complexity 1 30 0 2 819 21 0 0 0 chr4 30728092 30728113 -124902007 + AT_rich Low_complexity Low_complexity 1 21 0 2 819 336 225 0 0 chr4 30728163 30728234 -124901886 + Lx8 LINE L1 6992 7062 -411 2 819 44 70 0 0 chr4 30728315 30728401 -124901719 + AT_rich Low_complexity Low_complexity 1 86 0 2 819 1307 157 32 56 chr4 30728413 30728722 -124901398 - RMER6C LTR ERVK -13 677 135 2 819 468 0 0 0 chr4 30728722 30728774 -124901346 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 819 831 227 81 77 chr4 30728774 30728908 -124901212 - RMER6C LTR ERVK -556 134 1 2 819 24 0 0 0 chr4 30729088 30729112 -124901008 + AT_rich Low_complexity Low_complexity 1 24 0 2 819 290 283 11 21 chr4 30729358 30729452 -124900668 + GA-rich Low_complexity Low_complexity 1 93 0 2 819 7022 112 12 10 chr4 30729637 30729649 -124900471 - Lx3A LINE L1 -4 6977 6966 2 819 369 0 0 0 chr4 30729649 30729690 -124900430 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 819 7022 112 12 10 chr4 30729690 30730770 -124899350 - Lx3A LINE L1 -16 6965 5883 2 819 405 0 0 0 chr4 30730907 30730952 -124899168 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 819 713 245 224 42 chr4 30731329 30731615 -124898505 - RMER15 LTR ERVL -237 338 1 3 819 198 383 38 49 chr4 30731631 30731815 -124898305 + MIRb SINE MIR 66 247 -21 3 819 853 172 171 5 chr4 30732004 30732197 -124897923 + URR1B DNA MER1_type 1 225 0 3 819 970 220 237 98 chr4 30732213 30732681 -124897439 + MT2A LTR ERVL 1 533 0 3 819 538 229 8 41 chr4 30732910 30733033 -124897087 - ID_B1 SINE B4 -3 221 103 3 819 299 253 35 35 chr4 30732957 30733043 -124897077 - PB1D7 SINE Alu -20 100 15 3 819 234 0 0 0 chr4 30733373 30733399 -124896721 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 819 3517 53 2 2 chr4 30734407 30734832 -124895288 - L1_Mus1 LINE L1 -379 6188 5763 3 819 2894 69 3 8 chr4 30734832 30735213 -124894907 + L1_Mus1 LINE L1 6189 6567 0 3 819 3517 53 2 2 chr4 30735213 30735224 -124894896 - L1_Mus1 LINE L1 -805 5762 5752 3 819 340 406 53 74 chr4 30735318 30735749 -124894371 + MLT1J2 LTR MaLR 18 439 -9 3 819 24 0 0 0 chr4 30736337 30736361 -124893759 + AT_rich Low_complexity Low_complexity 1 24 0 3 819 864 168 0 6 chr4 30737634 30737790 -124892330 + L1_Mm LINE L1 4436 4590 -1293 3 819 691 148 85 18 chr4 30737785 30737950 -124892170 - L1_Mus3 LINE L1 -1 6637 6462 3 819 1970 116 13 3 chr4 30737926 30738238 -124891882 + MusHAL1 LINE L1 1276 1590 -1122 3 819 5750 97 9 48 chr4 30738234 30739373 -124890747 + L1_Mm LINE L1 4577 5586 -297 3 819 7545 65 10 9 chr4 30739373 30740366 -124889754 + L1Md_F2 LINE L1 5587 6580 -2 3 819 4364 182 2 0 chr4 30740382 30741190 -124888930 + L1_Mm LINE L1 4987 5796 -87 3 819 494 158 0 0 chr4 30741187 30741269 -124888851 - L1_Mus1 LINE L1 -646 5921 5840 3 819 961 139 0 18 chr4 30741260 30741429 -124888691 - L1_Mus1 LINE L1 -569 5314 5149 3 819 4627 81 6 11 chr4 30741429 30742065 -124888055 + L1_Mus1 LINE L1 5935 6567 0 3 819 5655 115 7 7 chr4 30742057 30742913 -124887207 + L1_Mus4 LINE L1 5780 6635 -1 3 819 579 264 154 21 chr4 30743517 30743757 -124886363 + RLTR10A LTR ERVK 140 411 0 3 819 650 337 56 39 chr4 30743866 30744150 -124885970 + B4A SINE B4 2 290 -2 3 819 1407 287 73 43 chr4 30744151 30744682 -124885438 - RMER15 LTR ERVL 0 575 29 3 819 187 31 0 59 chr4 30744817 30744851 -124885269 + (TTA)n Simple_repeat Simple_repeat 3 34 0 3 819 407 320 41 71 chr4 30746372 30746641 -124883479 - MLT1A LTR MaLR -16 358 98 3 819 222 116 0 0 chr4 30746666 30746709 -124883411 + (A)n Simple_repeat Simple_repeat 1 43 0 3 819 699 236 69 25 chr4 30747401 30747550 -124882570 - MTD LTR MaLR -12 407 252 3 819 1570 222 107 31 chr4 30747550 30748066 -124882054 + RLTR31B_Mm LTR ERVK 1 555 -2 3 819 699 236 69 25 chr4 30748066 30748120 -124882000 - MTD LTR MaLR -168 251 195 3 819 530 124 11 0 chr4 30748223 30748312 -124881808 + (GA)n Simple_repeat Simple_repeat 2 91 0 3 819 1657 213 46 25 chr4 30749137 30749503 -124880617 - ORR1C1 LTR MaLR 0 378 5 3 819 920 201 239 18 chr4 30750668 30751112 -124879008 + RMER4B LTR ERVK 3 585 0 3 819 875 219 126 0 chr4 30751150 30751238 -124878882 + MurERV4-int LTR ERVK 15 114 -5146 3 819 243 0 0 0 chr4 30751238 30751265 -124878855 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 819 1605 204 126 20 chr4 30751265 30751441 -124878679 + MurERV4-int LTR ERVK 115 440 -4820 3 819 582 15 0 0 chr4 30751441 30751508 -124878612 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 819 1605 179 126 51 chr4 30751508 30751828 -124878292 + MurERV4-int LTR ERVK 441 781 -4479 3 819 363 170 17 28 chr4 30751828 30751917 -124878203 + ORR1B1 LTR MaLR 199 358 -36 3 819 180 0 0 0 chr4 30751917 30751937 -124878183 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 819 4084 276 59 21 chr4 30751938 30752920 -124877200 + Lx6 LINE L1 6174 7195 -265 3 819 1322 97 30 10 chr4 30752920 30753118 -124877002 - L1Md_F2 LINE L1 -15 6567 6366 3 819 4084 276 59 21 chr4 30753118 30753372 -124876748 + Lx6 LINE L1 7196 7457 -3 3 819 23 86 0 0 chr4 30753867 30753925 -124876195 + AT_rich Low_complexity Low_complexity 1 58 0 3 819 648 307 20 55 chr4 30754535 30754735 -124875385 + B3A SINE B2 1 193 -23 3 819 213 350 11 0 chr4 30755465 30755571 -124874549 + MIRc SINE MIR 46 158 -110 3 819 35 24 0 0 chr4 30755706 30755748 -124874372 + AT_rich Low_complexity Low_complexity 1 42 0 3 819 31 0 0 0 chr4 30756288 30756319 -124873801 + AT_rich Low_complexity Low_complexity 1 31 0 3 819 455 266 85 26 chr4 30756786 30756975 -124873145 - MER63D DNA AcHobo -453 608 409 3 819 725 242 59 27 chr4 30756972 30757193 -124872927 - MER82 DNA MER2_type -415 238 11 3 819 29 60 0 0 chr4 30757295 30757345 -124872775 + AT_rich Low_complexity Low_complexity 1 50 0 3 819 309 183 0 0 chr4 30757396 30757456 -124872664 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 819 341 375 25 12 chr4 30757954 30758116 -124872004 - L2a LINE L2 -258 3168 3005 3 819 2454 131 8 5 chr4 30758188 30758564 -124871556 - Lx4A LINE L1 -93 6965 6589 3 819 1599 216 97 11 chr4 30759151 30759511 -124870609 + MTD LTR MaLR 17 407 -12 3 819 2269 325 72 25 chr4 30760481 30761508 -124868612 - Lx8 LINE L1 -5 7468 6394 3 819 1243 316 79 43 chr4 30761529 30762255 -124867865 - Lx5 LINE L1 0 7050 6455 3 819 602 121 30 10 chr4 30762262 30762362 -124867758 + RLTR11A LTR ERVK 402 503 -25 3 819 3067 117 50 34 chr4 30762362 30762803 -124867317 + Lx3A LINE L1 6466 6931 -50 3 819 261 0 0 0 chr4 30762803 30762832 -124867288 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 819 3067 117 50 34 chr4 30762832 30762895 -124867225 + Lx3A LINE L1 6932 6978 -3 3 819 22 35 0 0 chr4 30762896 30762925 -124867195 + AT_rich Low_complexity Low_complexity 1 29 0 3 819 8518 213 43 31 chr4 30762933 30764928 -124865192 - Lx5 LINE L1 -644 6406 4347 3 819 3285 18 31 0 chr4 30764928 30765312 -124864808 + MTA_Mm LTR MaLR 1 396 0 3 819 9093 32 11 0 chr4 30765312 30766398 -124863722 + MTA_Mm-int LTR MaLR 1 1098 0 3 819 3254 23 31 0 chr4 30766398 30766782 -124863338 + MTA_Mm LTR MaLR 1 396 0 3 819 8518 201 34 29 chr4 30766782 30767311 -124862809 - Lx5 LINE L1 -1534 4346 3822 3 819 1730 161 43 0 chr4 30767439 30767744 -124862376 + ORR1A3 LTR MaLR 1 318 -8 3 819 369 0 0 0 chr4 30769730 30769771 -124860349 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 819 352 247 186 0 chr4 30770313 30770410 -124859710 - B3 SINE B2 -101 115 1 3 819 29 84 0 0 chr4 30770558 30770629 -124859491 + AT_rich Low_complexity Low_complexity 1 71 0 3 819 210 118 0 0 chr4 30770870 30770904 -124859216 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 819 330 87 0 0 chr4 30770921 30770967 -124859153 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 3 819 289 248 47 9 chr4 30770968 30771074 -124859046 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 3 819 483 366 49 29 chr4 30771074 30771381 -124858739 + Lx8 LINE L1 6988 7300 -173 3 819 450 0 0 0 chr4 30771417 30771467 -124858653 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 819 8387 167 15 127 chr4 30771525 30772086 -124858034 - L1_Mur2 LINE L1 -1074 4803 4233 3 819 2452 42 3 13 chr4 30772086 30772401 -124857719 + L1Md_F3 LINE L1 6256 6567 -17 3 819 8387 167 15 127 chr4 30772401 30772892 -124857228 - L1_Mur2 LINE L1 -1645 4232 3878 3 819 6499 37 1 0 chr4 30772892 30773668 -124856452 - L1Md_T LINE L1 -2 6580 5804 3 819 8387 167 15 127 chr4 30773668 30774762 -124855358 - L1_Mur2 LINE L1 -2000 3877 2896 3 819 963 146 5 33 chr4 30774759 30774943 -124855177 - Lx2 LINE L1 -729 6268 6090 3 819 2212 162 30 23 chr4 30774947 30775376 -124854744 + Lx2 LINE L1 6564 6995 -2 3 819 417 39 0 0 chr4 30775806 30775857 -124854263 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 819 23 54 0 0 chr4 30776074 30776111 -124854009 + AT_rich Low_complexity Low_complexity 1 37 0 3 819 33 0 0 0 chr4 30776179 30776212 -124853908 + AT_rich Low_complexity Low_complexity 1 33 0 3 819 386 108 15 0 chr4 30776293 30776358 -124853762 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 3 819 423 294 89 82 chr4 30776361 30776720 -124853400 + MT2A LTR ERVL 3 520 -64 3 819 283 218 45 40 chr4 30776768 30777003 -124853117 + (TA)n Simple_repeat Simple_repeat 1 236 0 3 819 1724 243 106 8 chr4 30777050 30777561 -124852559 - Lx9 LINE L1 -14 7630 7070 3 819 252 86 0 0 chr4 30777836 30777871 -124852249 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 819 5568 175 38 19 chr4 30778013 30779207 -124850913 + Lx3B LINE L1 5690 6969 -4 3 819 563 178 0 7 chr4 30779209 30779269 -124850851 + polypurine Low_complexity Low_complexity 1 60 0 3 819 1253 56 6 0 chr4 30779269 30779448 -124850672 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 819 563 178 0 7 chr4 30779448 30779523 -124850597 + polypurine Low_complexity Low_complexity 61 135 0 3 819 1306 88 28 0 chr4 30779979 30780160 -124849960 - B2_Mm2 SINE B2 -9 186 1 3 819 229 259 19 0 chr4 30781279 30781333 -124848787 + CT-rich Low_complexity Low_complexity 3 57 0 3 819 315 0 0 0 chr4 30781351 30781386 -124848734 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 819 783 10 29 0 chr4 30781448 30781552 -124848568 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 819 356 331 52 8 chr4 30781556 30781690 -124848430 - B3A SINE B2 -55 143 4 3 819 2118 68 4 7 chr4 30784122 30784403 -124845717 - L1_Mus2 LINE L1 0 6566 6287 3 819 453 309 66 0 chr4 30784470 30784606 -124845514 - B1_Mur2 SINE Alu 0 149 5 3 819 1149 305 96 27 chr4 30784827 30785349 -124844771 - Lx8 LINE L1 -181 7292 6735 3 819 1252 181 4 13 chr4 30785404 30785639 -124844481 - RMER6C LTR ERVK -4 686 454 3 819 3367 181 63 7 chr4 30785639 30786356 -124843764 - RMER6-int LTR ERVK -452 2725 1969 3 819 375 23 0 0 chr4 30786356 30786400 -124843720 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 3 819 315 49 0 0 chr4 30786404 30786445 -124843675 + (CATTG)n Simple_repeat Simple_repeat 2 42 0 3 819 4913 192 37 9 chr4 30786445 30787442 -124842678 - RMER6-int LTR ERVK -1363 1814 790 3 819 296 67 0 22 chr4 30787439 30787485 -124842635 - RMER6-int LTR ERVK -2619 558 514 3 819 800 229 25 0 chr4 30787538 30787695 -124842425 - ORR1B1-int LTR MaLR -547 1416 1256 3 819 3589 185 108 39 chr4 30787686 30788564 -124841556 - ORR1B1-int LTR MaLR -1024 939 1 3 819 1356 217 59 88 chr4 30788568 30788933 -124841187 - ORR1B1 LTR MaLR -8 386 1 3 819 522 351 54 61 chr4 30789011 30789290 -124840830 - MLT1F1 LTR MaLR -279 290 14 3 819 3601 100 14 2 chr4 30790106 30790626 -124839494 + L1_Mus3 LINE L1 6109 6634 -4 3 819 216 0 0 0 chr4 30790793 30790817 -124839303 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 3 819 274 233 27 14 chr4 30790970 30791044 -124839076 + MIR SINE MIR 175 249 -13 3 819 234 365 16 0 chr4 30791430 30791493 -124838627 + ID4_ SINE ID 3 66 -17 3 819 22 35 0 0 chr4 30791493 30791522 -124838598 + AT_rich Low_complexity Low_complexity 1 29 0 3 819 25 65 0 0 chr4 30791812 30791858 -124838262 + AT_rich Low_complexity Low_complexity 1 46 0 3 819 237 351 40 0 chr4 30791923 30791997 -124838123 + B4A SINE B4 2 78 -214 3 819 2155 127 31 31 chr4 30792113 30792495 -124837625 + Lx LINE L1 6273 6654 0 3 819 29427 73 4 5 chr4 30792626 30797301 -124832819 - L1Md_F2 LINE L1 -11 6571 1900 4 819 288 0 0 0 chr4 30797405 30797437 -124832683 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 819 591 240 16 0 chr4 30797438 30797567 -124832553 - B1_Mus1 SINE Alu 0 148 18 4 819 294 210 106 34 chr4 30797989 30798125 -124831995 - L1MC LINE L1 -537 5796 5662 4 819 183 42 0 0 chr4 30798228 30798252 -124831868 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 819 288 0 0 0 chr4 30798327 30798359 -124831761 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 4 819 1075 92 0 0 chr4 30798379 30798520 -124831600 - B1_Mus1 SINE Alu -7 141 1 4 819 545 324 82 41 chr4 30798525 30799175 -124830945 - L1MEc LINE L1 -2948 3371 2675 4 819 3301 213 29 10 chr4 30799459 30800161 -124829959 + RMER6D LTR ERVK 1 715 -5 4 819 343 300 78 26 chr4 30800274 30800428 -124829692 + B3A SINE B2 34 195 -3 4 819 2020 141 11 75 chr4 30800646 30801022 -124829098 + ORR1B1 LTR MaLR 43 394 0 4 819 284 257 14 0 chr4 30801024 30801094 -124829026 - B3A SINE B2 -127 71 1 4 819 1991 97 3 62 chr4 30801491 30801799 -124828321 - L1_Mus2 LINE L1 -2 6564 6275 4 102 326 387 42 36 chr4 30801825 30802133 -124827987 - L1MEc LINE L1 -6079 321 12 4 820 553 269 140 0 chr4 30803328 30803499 -124826621 - MTE2a LTR MaLR 0 379 185 4 820 1809 193 65 3 chr4 30804115 30804453 -124825667 + ORR1B2 LTR MaLR 1 359 -8 4 820 667 233 0 33 chr4 30804677 30804828 -124825292 - B1_Mus2 SINE Alu -1 146 1 4 820 704 332 59 39 chr4 30805855 30806212 -124823908 - MLT1F LTR MaLR -5 543 180 4 820 1428 242 41 30 chr4 30806229 30806595 -124823525 - ORR1C2 LTR MaLR -9 375 6 4 820 420 145 0 0 chr4 30806904 30806973 -124823147 + L1_Mur3 LINE L1 282 350 -7362 4 820 38017 42 0 3 chr4 30806986 30813212 -124816908 - L1Md_T LINE L1 0 6585 281 4 820 3609 251 59 52 chr4 30813222 30813582 -124816538 + L1_Mur3 LINE L1 130 502 -7226 4 820 1268 95 16 0 chr4 30813582 30813771 -124816349 + L1_Mus2 LINE L1 6375 6566 0 4 820 3609 251 59 52 chr4 30813771 30813946 -124816174 + L1_Mur3 LINE L1 503 643 -7085 4 820 1108 70 0 14 chr4 30813946 30814090 -124816030 - B1_Mus1 SINE Alu -5 143 2 4 820 3609 204 73 50 chr4 30814090 30815189 -124814931 + L1_Mur3 LINE L1 644 1794 -4086 4 820 242 77 0 0 chr4 30815198 30815237 -124814883 + L1_Mur3 LINE L1 2620 2658 -3222 4 820 575 207 52 0 chr4 30815274 30815409 -124814711 + L1_Mur3 LINE L1 3687 3828 -2052 4 820 276 72 0 23 chr4 30815413 30815456 -124814664 - ORR1A4 LTR MaLR -8 321 280 4 820 651 199 33 111 chr4 30815429 30815610 -124814510 - ORR1A4 LTR MaLR -162 167 1 4 820 2980 184 93 3 chr4 30815610 30816312 -124813808 + L1_Mur3 LINE L1 3824 4588 -1292 4 820 4522 261 35 61 chr4 30816302 30817738 -124812382 + Lx7 LINE L1 6298 7696 0 4 820 1278 115 0 10 chr4 30817986 30818179 -124811941 - B2_Mm2 SINE B2 -2 193 3 4 820 1826 69 4 4 chr4 30818196 30818445 -124811675 - L1Md_F2 LINE L1 0 6582 6334 4 820 4071 30 0 0 chr4 30818445 30818919 -124811201 + L1Md_F2 LINE L1 5873 6346 -236 4 820 1361 240 59 36 chr4 30819133 30819470 -124810650 - MTC LTR MaLR -56 365 21 4 820 419 346 69 0 chr4 30819567 30819697 -124810423 - ID_B1 SINE B4 -2 222 84 4 820 2009 121 14 22 chr4 30819718 30820091 -124810029 + RLTR10A LTR ERVK 1 386 -4 4 820 1944 207 30 24 chr4 30820919 30821347 -124808773 - ORR1B1-int LTR MaLR -227 1282 546 4 820 378 271 52 10 chr4 30821353 30821450 -124808670 - B1_Mus1 SINE Alu -37 111 11 4 820 858 273 44 22 chr4 30821453 30821678 -124808442 - MTE2b LTR MaLR -149 230 1 4 820 226 399 23 0 chr4 30822542 30822675 -124807445 + L2 LINE L2 2470 2605 -814 4 820 648 0 0 0 chr4 30823085 30823157 -124806963 + (GAAA)n Simple_repeat Simple_repeat 4 75 0 4 820 25 51 0 0 chr4 30824527 30824566 -124805554 + AT_rich Low_complexity Low_complexity 1 39 0 4 820 243 61 0 0 chr4 30824571 30824604 -124805516 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 820 417 97 0 0 chr4 30825009 30825081 -124805039 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 820 22 56 0 0 chr4 30825138 30825174 -124804946 + AT_rich Low_complexity Low_complexity 1 36 0 4 820 421 326 0 55 chr4 30826003 30826149 -124803971 - ID_B1 SINE B4 -6 218 81 4 820 315 307 153 0 chr4 30827025 30827162 -124802958 - MTE2a LTR MaLR -13 366 209 4 820 2441 46 0 7 chr4 30827513 30827817 -124802303 + L1_Mus1 LINE L1 6264 6565 -2 4 820 1145 128 21 5 chr4 30827904 30828093 -124802027 - B2_Mm2 SINE B2 -1 194 3 4 820 2490 295 63 48 chr4 30828461 30828774 -124801346 - Tigger1 DNA MER2_type -307 2111 1811 4 820 729 289 5 5 chr4 30828774 30828972 -124801148 - B3A SINE B2 0 198 1 4 820 2490 295 63 48 chr4 30828972 30829676 -124800444 - Tigger1 DNA MER2_type -608 1810 1079 4 820 1785 234 37 20 chr4 30829677 30830086 -124800034 + MTD LTR MaLR 1 416 -3 4 820 425 267 204 0 chr4 30830095 30830286 -124799834 - Tigger1 DNA MER2_type -1337 1081 852 4 820 776 320 74 17 chr4 30830491 30830895 -124799225 - Tigger1 DNA MER2_type -1605 813 387 4 820 1085 82 0 0 chr4 30830895 30831042 -124799078 - L1_Mus1 LINE L1 -587 5980 5834 4 820 4566 70 0 0 chr4 30831042 30831629 -124798491 + L1_Mus1 LINE L1 5981 6567 0 4 820 24 32 0 0 chr4 30831629 30831660 -124798460 + AT_rich Low_complexity Low_complexity 1 31 0 4 820 336 83 0 0 chr4 30831699 30831747 -124798373 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 4 820 883 285 37 53 chr4 30831749 30832123 -124797997 - Tigger1 DNA MER2_type -2037 381 14 4 820 19609 20 1 0 chr4 30833027 30835338 -124794782 - L1Md_T LINE L1 -557 5326 3015 4 820 2357 22 0 0 chr4 30835337 30835609 -124794511 + L1Md_T LINE L1 5315 5586 -297 4 820 8023 55 0 0 chr4 30835609 30836605 -124793515 + L1Md_T LINE L1 5587 6582 0 4 820 270 73 0 0 chr4 30836613 30836654 -124793466 + (A)n Simple_repeat Simple_repeat 1 41 0 4 820 571 284 28 37 chr4 30836973 30837189 -124792931 - B3 SINE B2 -2 214 1 4 820 229 243 71 0 chr4 30837376 30837446 -124792674 - L1ME3B LINE L1 -286 5954 5880 4 820 225 178 0 0 chr4 30837566 30837611 -124792509 + CT-rich Low_complexity Low_complexity 2 46 0 4 820 868 330 119 13 chr4 30837655 30838125 -124791995 - Lx8 LINE L1 -315 7158 6639 4 820 2089 308 53 121 chr4 30838245 30840240 -124789880 - L1MA4A LINE L1 -294 6009 4034 4 820 246 32 0 0 chr4 30840240 30840271 -124789849 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 820 2089 308 54 124 chr4 30840271 30841844 -124788276 - L1MA4A LINE L1 -1847 4033 2653 4 820 821 282 160 46 chr4 30841857 30842269 -124787851 + RMER15 LTR ERVL 45 503 -72 4 820 706 311 65 21 chr4 30842301 30842872 -124787248 - L1_Rod LINE L1 -4003 1844 1249 4 820 2276 96 9 58 chr4 30843445 30843789 -124786331 - ORR1A2 LTR MaLR 0 327 1 4 820 324 0 0 0 chr4 30843844 30843880 -124786240 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 820 227 232 98 0 chr4 30844345 30844427 -124785693 + (CATG)n Simple_repeat Simple_repeat 1 90 0 4 820 278 372 101 15 chr4 30844488 30844687 -124785433 - B3 SINE B2 0 216 1 4 820 655 231 59 6 chr4 30845987 30846159 -124783961 + Lx5 LINE L1 6185 6349 -701 4 820 465 287 6 77 chr4 30846157 30846327 -124783793 + Lx5 LINE L1 6485 6642 -408 4 820 200 220 0 63 chr4 30846365 30846428 -124783692 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 4 820 932 214 71 9 chr4 30846475 30846687 -124783433 + URR1A DNA MER1_type 1 225 -1 4 820 448 322 82 0 chr4 30847303 30847449 -124782671 - RSINE1 SINE B4 -6 159 2 4 820 344 290 63 35 chr4 30847554 30847697 -124782423 - B1F2 SINE Alu 0 149 3 4 820 1059 324 29 33 chr4 30847856 30848348 -124781772 + Lx9 LINE L1 6835 7458 -186 4 820 360 0 0 0 chr4 30848348 30848388 -124781732 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 820 575 375 65 28 chr4 30848388 30848512 -124781608 + Lx9 LINE L1 7336 7471 -2 4 820 364 220 0 0 chr4 30848810 30848869 -124781251 + RSINE1 SINE B4 3 61 -104 4 820 1998 113 6 59 chr4 30848884 30849221 -124780899 + ORR1A2 LTR MaLR 1 319 -8 4 820 38789 35 0 1 chr4 30850832 30856249 -124773871 - L1Md_T LINE L1 0 6582 1170 4 820 5564 158 24 30 chr4 30856255 30857369 -124772751 - L1Md_T LINE L1 -5411 1205 99 4 820 906 116 0 0 chr4 30857671 30857809 -124772311 + (GGAGA)n Simple_repeat Simple_repeat 2 139 0 4 820 27 49 0 0 chr4 30858194 30858235 -124771885 + AT_rich Low_complexity Low_complexity 1 41 0 4 820 207 0 0 0 chr4 30858964 30858987 -124771133 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 820 192 179 0 0 chr4 30860428 30860467 -124769653 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 4 820 186 328 76 42 chr4 30861147 30861265 -124768855 + L2c LINE L2 2947 3068 -319 4 820 577 313 124 73 chr4 30861958 30862475 -124767645 - MLT1G3 LTR MaLR 0 579 5 4 820 248 250 0 0 chr4 30863008 30863068 -124767052 + L1MB8 LINE L1 6107 6166 -12 4 820 414 39 0 0 chr4 30863512 30863564 -124766556 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 820 474 108 0 0 chr4 30863856 30863930 -124766190 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 820 33 25 0 0 chr4 30864023 30864063 -124766057 + AT_rich Low_complexity Low_complexity 1 40 0 4 820 225 83 0 0 chr4 30864148 30864184 -124765936 + (A)n Simple_repeat Simple_repeat 1 36 0 4 820 238 325 25 0 chr4 30864343 30864423 -124765697 - Lx7 LINE L1 -400 7296 7215 4 820 1135 69 7 0 chr4 30864534 30864679 -124765441 + B1_Mm SINE Alu 1 146 -1 4 820 1161 273 38 35 chr4 30864702 30865109 -124765011 - Lx7 LINE L1 -154 7542 6878 4 820 207 0 0 0 chr4 30865113 30865136 -124764984 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 820 783 104 0 0 chr4 30865136 30865250 -124764870 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 820 3741 269 28 27 chr4 30865250 30865672 -124764448 - Lx7 LINE L1 -961 6735 6295 4 820 747 0 0 0 chr4 30865672 30865755 -124764365 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 4 820 3741 232 35 25 chr4 30865755 30866897 -124763223 - Lx7 LINE L1 -1402 6294 5142 4 820 1381 179 46 13 chr4 30866921 30867227 -124762893 - Lx7 LINE L1 -2404 3476 3161 4 820 1855 244 148 25 chr4 30867243 30868041 -124762079 + RMER6C LTR ERVK 3 720 0 4 820 5882 194 45 100 chr4 30868046 30868302 -124761818 - Lx7 LINE L1 -2737 3143 2889 4 820 696 24 0 0 chr4 30868302 30868384 -124761736 + (TC)n Simple_repeat Simple_repeat 2 83 0 4 820 5882 194 45 100 chr4 30868384 30868700 -124761420 - Lx7 LINE L1 -2992 2888 2559 4 820 363 23 0 0 chr4 30868700 30868744 -124761376 + (TTG)n Simple_repeat Simple_repeat 3 46 0 4 820 5882 194 45 100 chr4 30868744 30869760 -124760360 - Lx7 LINE L1 -3322 2558 1603 4 820 396 0 0 0 chr4 30869760 30869804 -124760316 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 820 5882 194 45 100 chr4 30869804 30870189 -124759931 - Lx7 LINE L1 -4278 1602 1278 4 820 313 222 139 0 chr4 30870191 30870263 -124759857 - RLTR25A LTR ERVK -498 605 524 4 820 537 250 0 0 chr4 30870208 30870316 -124759804 - MT2B LTR ERVL -342 259 152 4 820 810 203 31 18 chr4 30870394 30870704 -124759416 - ORR1A4-int LTR MaLR -1586 206 1 4 820 413 39 0 0 chr4 30870704 30870755 -124759365 - ORR1A4 LTR MaLR 0 329 279 4 820 337 119 85 0 chr4 30870760 30870819 -124759301 - ORR1A4 LTR MaLR -265 64 1 4 820 352 102 136 48 chr4 30870897 30871000 -124759120 - Lx2A LINE L1 -2 7006 6895 4 820 483 182 0 0 chr4 30871003 30871113 -124759007 + Lx2A1 LINE L1 6037 6146 -862 5 820 248 283 105 46 chr4 30871217 30871369 -124758751 - RLTR25B LTR ERVK 0 1028 868 5 820 347 278 54 77 chr4 30872099 30872267 -124757853 - RLTR25B LTR ERVK -857 171 8 5 820 810 305 116 36 chr4 30872715 30873188 -124756932 - MER20B DNA MER1_type -46 737 227 5 820 396 313 15 7 chr4 30873757 30873892 -124756228 + Lx9 LINE L1 6523 6658 -986 5 820 845 166 0 12 chr4 30873941 30874106 -124756014 + GA-rich Low_complexity Low_complexity 3 165 0 5 820 1349 205 55 19 chr4 30874478 30874786 -124755334 + ORR1C1 LTR MaLR 60 378 0 5 820 300 196 0 0 chr4 30874791 30874847 -124755273 - L1_Rod LINE L1 -114 5733 5678 5 820 230 262 116 23 chr4 30874864 30874950 -124755170 - L1_Mur3 LINE L1 -374 5506 5413 5 820 2990 119 10 35 chr4 30874976 30875464 -124754656 - RLTR31B_Mm LTR ERVK -81 476 1 5 820 1169 257 43 43 chr4 30875464 30875904 -124754216 - L1_Rod LINE L1 -466 5381 4942 5 820 759 84 0 0 chr4 30875959 30876066 -124754054 - B1_Mus1 SINE Alu -41 107 1 5 820 621 206 166 78 chr4 30876083 30876288 -124753832 - URR1B DNA MER1_type 0 225 3 5 820 230 56 28 0 chr4 30876497 30876533 -124753587 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 820 1903 191 7 79 chr4 30877429 30877845 -124752275 - ORR1B1 LTR MaLR -8 386 1 5 820 311 348 42 21 chr4 30878177 30878321 -124751799 - B1F SINE Alu 0 149 3 5 820 1973 199 10 99 chr4 30880432 30880586 -124749534 + Lx5 LINE L1 5521 5673 -1787 5 820 288 0 0 0 chr4 30880586 30880618 -124749502 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 820 2090 291 47 80 chr4 30880618 30881923 -124748197 + Lx5 LINE L1 5674 6897 -153 5 820 1769 234 0 0 chr4 30881951 30882302 -124747818 + L1_Mur2 LINE L1 55 405 -6307 5 820 3936 126 16 2 chr4 30882298 30882317 -124747803 + Lx4A LINE L1 5263 5281 -596 5 820 7151 39 9 3 chr4 30882317 30883191 -124746929 + L1Md_F3 LINE L1 5703 6581 -3 5 820 8259 143 29 8 chr4 30883191 30884922 -124745198 + Lx4A LINE L1 5282 7058 0 5 820 363 151 13 27 chr4 30884927 30885002 -124745118 + ORR1B1 LTR MaLR 320 393 -1 5 820 28 48 0 0 chr4 30885118 30885160 -124744960 + AT_rich Low_complexity Low_complexity 1 42 0 5 820 4457 52 0 2 chr4 30885357 30885913 -124744207 + L1Md_F2 LINE L1 6028 6582 0 5 820 1296 182 71 4 chr4 30886090 30886344 -124743776 + Lx3C LINE L1 6702 6972 -4 5 820 390 42 0 0 chr4 30886408 30886456 -124743664 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 820 32 57 0 0 chr4 30887309 30887362 -124742758 + AT_rich Low_complexity Low_complexity 1 53 0 5 820 459 0 0 0 chr4 30887429 30887480 -124742640 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 820 237 24 71 0 chr4 30887480 30887521 -124742599 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 820 7283 106 11 2 chr4 30888144 30889587 -124740533 - L1_Mus3 LINE L1 -12 6626 5171 5 820 1066 130 0 0 chr4 30889587 30889771 -124740349 + L1_Mm LINE L1 4142 4325 -1558 5 820 3189 25 10 2 chr4 30889772 30890173 -124739947 + L1Md_F2 LINE L1 5605 6008 -574 5 820 844 46 0 58 chr4 30890174 30890313 -124739807 + L1Md_F2 LINE L1 6453 6583 -1 5 820 5459 102 12 40 chr4 30890319 30891232 -124738888 + L1_Mm LINE L1 4328 5214 -669 5 820 297 313 141 16 chr4 30891548 30891733 -124738387 - RMER15-int LTR ERVL -3472 1527 1320 5 820 591 302 32 12 chr4 30891890 30892138 -124737982 - RMER15-int LTR ERVL -3904 1095 843 5 820 185 274 117 52 chr4 30892149 30892226 -124737894 + L3 LINE CR1 3481 3562 -927 5 820 5137 88 11 6 chr4 30892538 30893257 -124736863 - L1_Mus3 LINE L1 -4 6634 5912 5 820 3004 114 29 4 chr4 30893257 30893743 -124736377 - L1_Mm LINE L1 -178 5705 5208 5 820 326 167 0 0 chr4 30893737 30893797 -124736323 - L1_Mm LINE L1 -916 4967 4908 5 820 5964 84 74 5 chr4 30893863 30894698 -124735422 + RLTR13B1 LTR ERVK 1 893 0 5 820 356 377 55 36 chr4 30894893 30895146 -124734974 - RMER15 LTR ERVL -19 556 299 5 820 186 43 0 0 chr4 30895537 30895560 -124734560 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 820 28 0 0 0 chr4 30897695 30897723 -124732397 + AT_rich Low_complexity Low_complexity 1 28 0 5 820 192 77 0 0 chr4 30898133 30898159 -124731961 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 820 2568 304 62 14 chr4 30898300 30899348 -124730772 - Lx8 LINE L1 -288 7185 6088 5 820 22 0 0 0 chr4 30899463 30899485 -124730635 + AT_rich Low_complexity Low_complexity 1 22 0 5 820 272 398 142 67 chr4 30899788 30899821 -124730299 + B4A SINE B4 6 38 -254 5 820 432 0 0 0 chr4 30899821 30899869 -124730251 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 820 272 398 142 67 chr4 30899869 30900102 -124730018 + B4A SINE B4 39 292 0 5 820 1400 229 6 40 chr4 30900105 30900455 -124729665 + MTB_Mm LTR MaLR 1 338 -69 5 820 1301 317 91 22 chr4 30900952 30901004 -124729116 + Lx5 LINE L1 4949 5018 -862 5 820 798 67 0 0 chr4 30901004 30901109 -124729011 + (GGAAA)n Simple_repeat Simple_repeat 5 109 0 5 820 1301 315 103 19 chr4 30901109 30901909 -124728211 + Lx5 LINE L1 5019 5863 -1781 5 820 429 20 0 0 chr4 30901912 30901962 -124728158 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 820 1214 278 29 0 chr4 30902141 30902439 -124727681 + Lx5 LINE L1 6219 6736 -724 5 820 414 0 0 0 chr4 30902439 30902485 -124727635 + (TAAAA)n Simple_repeat Simple_repeat 1 46 0 5 820 1421 302 33 32 chr4 30902485 30903118 -124727002 + Lx5 LINE L1 6455 7458 -2 5 820 1801 318 69 71 chr4 30903275 30904499 -124725621 + Lx8 LINE L1 6231 7452 -21 5 820 190 136 45 0 chr4 30904499 30904543 -124725577 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 820 1139 78 0 7 chr4 30904585 30904740 -124725380 + MTB LTR MaLR 247 400 0 5 820 221 185 75 30 chr4 30905241 30905308 -124724812 + (TTAAA)n Simple_repeat Simple_repeat 5 74 0 5 820 332 270 79 14 chr4 30905526 30905665 -124724455 - Tigger12A DNA MER2_type -1 790 643 5 820 375 354 88 17 chr4 30905744 30906040 -124724080 - L2a LINE L2 -1 3425 3109 5 820 204 40 0 0 chr4 30907431 30907456 -124722664 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5 820 22 0 0 0 chr4 30907468 30907490 -124722630 + AT_rich Low_complexity Low_complexity 1 22 0 5 820 203 151 24 110 chr4 30907566 30907648 -124722472 + A-rich Low_complexity Low_complexity 2 76 0 5 820 802 171 0 15 chr4 30908697 30908828 -124721292 - B1_Mus2 SINE Alu -10 137 9 5 820 26 30 0 0 chr4 30908834 30908867 -124721253 + AT_rich Low_complexity Low_complexity 1 33 0 5 820 967 305 16 16 chr4 30909138 30909441 -124720679 - MT2A LTR ERVL -218 315 13 5 820 450 252 73 96 chr4 30909436 30909655 -124720465 + MER44B DNA MER2_type 333 546 -4 5 820 1371 41 18 0 chr4 30909835 30910106 -124720014 + (TAGA)n Simple_repeat Simple_repeat 1 275 0 5 820 480 148 0 0 chr4 30910106 30910214 -124719906 + (GA)n Simple_repeat Simple_repeat 1 108 0 5 820 310 172 29 29 chr4 30911545 30911647 -124718473 + T-rich Low_complexity Low_complexity 6 107 0 5 820 663 248 18 61 chr4 30911707 30911935 -124718185 - Lx9 LINE L1 -610 7034 6817 5 820 1295 284 10 17 chr4 30911984 30912399 -124717721 + Lx7 LINE L1 7021 7432 -264 5 820 305 183 48 12 chr4 30912469 30912552 -124717568 + Lx7 LINE L1 7605 7690 -6 5 820 241 238 36 0 chr4 30913961 30914045 -124716075 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 820 5885 65 1 5 chr4 30914319 30915077 -124715043 - L1Md_F2 LINE L1 -12 6570 5816 5 820 1391 200 200 9 chr4 30915429 30915989 -124714131 - Lx9 LINE L1 -199 7445 6779 5 820 1592 204 207 19 chr4 30915993 30916279 -124713841 + RMER6C LTR ERVK 4 357 -333 5 820 297 0 0 0 chr4 30916279 30916312 -124713808 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 820 1592 218 200 16 chr4 30916312 30916503 -124713617 + RMER6C LTR ERVK 358 690 0 5 820 828 184 13 6 chr4 30916517 30916676 -124713444 - Lx9 LINE L1 -898 6746 6587 5 820 940 244 28 12 chr4 30916679 30916932 -124713188 + Lx9 LINE L1 5713 5969 -1675 5 820 2006 173 133 79 chr4 30917090 30917662 -124712458 + RLTR6_Mm LTR ERV1 1 603 -51 5 820 58583 36 12 0 chr4 30917663 30925235 -124704885 + RLTR6-int LTR ERV1 1 7778 0 5 820 1954 171 138 80 chr4 30925235 30925787 -124704333 + RLTR6_Mm LTR ERV1 1 584 -70 5 820 811 282 53 4 chr4 30925821 30926067 -124704053 + Lx9 LINE L1 6306 6563 -1081 5 820 1512 178 216 17 chr4 30926097 30926545 -124703575 + Lx4A LINE L1 6522 7058 0 5 820 899 86 0 32 chr4 30926557 30926713 -124703407 + (GGAA)n Simple_repeat Simple_repeat 3 153 0 5 820 816 11 0 0 chr4 30926713 30926805 -124703315 + (GAGAA)n Simple_repeat Simple_repeat 1 93 0 5 820 205 281 53 0 chr4 30928060 30928117 -124702003 + MIRc SINE MIR 111 170 -98 5 820 492 357 29 12 chr4 30928564 30928737 -124701383 + B3A SINE B2 23 198 0 5 820 734 255 31 28 chr4 30929350 30929604 -124700516 - Lx5 LINE L1 0 7050 6796 5 820 239 278 22 11 chr4 30929645 30929736 -124700384 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 5 820 434 341 16 16 chr4 30929773 30929955 -124700165 - MT2A LTR ERVL -49 484 303 5 820 22 0 0 0 chr4 30930905 30930927 -124699193 + AT_rich Low_complexity Low_complexity 1 22 0 5 820 497 328 15 0 chr4 30932078 30932209 -124697911 + MTEb LTR MaLR 2 134 -245 5 820 536 295 65 116 chr4 30932385 30932772 -124697348 + Lx7 LINE L1 6493 6859 -837 5 102 1034 231 9 13 chr4 30932785 30933009 -124697111 - URR1A DNA MER1_type -2 224 2 5 821 354 310 47 90 chr4 30933009 30933030 -124697090 + CYRA11_Mm Unknown Y-chromosome 232 406 -211 5 821 1195 280 18 25 chr4 30933030 30933426 -124696694 + Lx7 LINE L1 6909 7301 -395 5 821 271 223 109 109 chr4 30933666 30933822 -124696298 + Lx9 LINE L1 6985 7140 -504 5 821 263 312 63 13 chr4 30933834 30933993 -124696127 + Lx9 LINE L1 7307 7473 -171 5 821 255 61 0 0 chr4 30933998 30934031 -124696089 + (CATA)n Simple_repeat Simple_repeat 4 36 0 5 821 613 275 83 21 chr4 30934161 30934354 -124695766 + MTEb LTR MaLR 175 379 0 5 821 768 99 0 0 chr4 30935198 30935309 -124694811 + (TTC)n Simple_repeat Simple_repeat 1 111 0 5 821 519 122 0 0 chr4 30935347 30935437 -124694683 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 821 331 354 60 40 chr4 30935703 30935953 -124694167 + MER77 LTR ERVL 310 564 -43 5 821 296 322 120 69 chr4 30936061 30936411 -124693709 - ORR1D2 LTR MaLR -1 373 6 5 821 2622 49 3 0 chr4 30936662 30936988 -124693132 - L1Md_F2 LINE L1 -12 6570 6244 5 821 1384 239 162 32 chr4 30937229 30937636 -124692484 + MT2A LTR ERVL 6 465 -68 5 821 735 78 0 0 chr4 30937641 30937744 -124692376 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 5 821 2054 188 33 6 chr4 30937785 30938144 -124691976 + RLTR41 LTR ERV1 78 446 0 5 821 278 254 96 15 chr4 30938506 30938642 -124691478 + L1M4 LINE L1 3895 4041 -2105 5 821 278 256 118 9 chr4 30938971 30939200 -124690920 - L1M5 LINE L1 -1712 4434 4181 5 821 917 199 43 16 chr4 30939818 30940002 -124690118 + B3 SINE B2 3 191 -25 5 821 475 324 113 14 chr4 30941087 30941309 -124688811 - B4A SINE B4 -39 253 10 6 821 663 311 55 87 chr4 30941509 30941925 -124688195 - Lx8 LINE L1 -265 7208 6806 6 821 595 320 0 0 chr4 30941948 30942123 -124687997 + Lx8 LINE L1 6527 6701 -772 6 821 27057 120 66 26 chr4 30942495 30948462 -124681658 - L1_Mus1 LINE L1 0 6657 264 6 821 235 0 57 0 chr4 30948809 30948844 -124681276 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 821 192 179 0 0 chr4 30949473 30949512 -124680608 + GA-rich Low_complexity Low_complexity 2 40 0 6 821 252 43 65 0 chr4 30950075 30950121 -124679999 + (TTG)n Simple_repeat Simple_repeat 2 50 0 6 821 944 290 48 17 chr4 30950421 30950716 -124679404 - L1_Rod LINE L1 -6862 310 7 6 821 3551 135 76 11 chr4 30952207 30952827 -124677293 - Lx2 LINE L1 0 6997 6338 6 821 5934 173 57 10 chr4 30952819 30954746 -124675374 - Lx2 LINE L1 0 6566 4474 6 821 3690 152 16 22 chr4 30954745 30955423 -124674697 + Lx2 LINE L1 3801 4474 -1403 6 821 234 253 83 10 chr4 30955465 30955561 -124674559 - L1MD LINE L1 -446 5796 5694 6 821 225 65 0 0 chr4 30955703 30955734 -124674386 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 821 231 191 0 0 chr4 30957544 30957586 -124672534 + MTE2b LTR MaLR 1 42 -337 6 821 237 262 88 61 chr4 30957608 30957722 -124672398 + MIRb SINE MIR 104 220 -48 6 821 3793 237 46 11 chr4 30958345 30959190 -124670930 + Lx6 LINE L1 6282 7156 -304 6 821 430 314 102 25 chr4 30960517 30960762 -124669358 + MER31B LTR ERV1 195 458 -8 6 821 21 0 0 0 chr4 30960911 30960932 -124669188 + AT_rich Low_complexity Low_complexity 1 21 0 6 821 645 175 0 0 chr4 30962069 30962240 -124667880 + CT-rich Low_complexity Low_complexity 1 171 0 6 821 255 61 0 0 chr4 30962240 30962273 -124667847 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 821 1297 289 54 15 chr4 30962846 30963236 -124666884 - MTD LTR MaLR -13 406 2 6 821 362 115 0 0 chr4 30963236 30963279 -124666841 - tRNA-Ala-GCA tRNA tRNA -31 44 2 6 821 2974 25 16 5 chr4 30963279 30963646 -124666474 + L1Md_F3 LINE L1 6214 6584 0 6 821 204 40 0 0 chr4 30963646 30963671 -124666449 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 821 1169 34 54 0 chr4 30964706 30964854 -124665266 - L1_Mus1 LINE L1 0 6567 6412 6 821 1171 30 0 0 chr4 30964859 30964994 -124665126 + L1_Mus1 LINE L1 6231 6365 -202 6 821 21 0 0 0 chr4 30965072 30965093 -124665027 + AT_rich Low_complexity Low_complexity 1 21 0 6 821 306 0 0 0 chr4 30967229 30967263 -124662857 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 821 336 24 0 0 chr4 30968345 30968386 -124661734 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 821 207 162 0 0 chr4 30968827 30968864 -124661256 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 6 821 301 328 8 54 chr4 30968903 30969032 -124661088 + RSINE1 SINE B4 2 124 -41 6 821 504 0 0 0 chr4 30969032 30969088 -124661032 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 821 34 0 0 0 chr4 30969118 30969152 -124660968 + AT_rich Low_complexity Low_complexity 1 34 0 6 821 2276 39 11 3 chr4 30970067 30970350 -124659770 - L1Md_F3 LINE L1 -3 6581 6297 6 821 6173 93 8 5 chr4 30971074 30971942 -124658178 - Lx3_Mus LINE L1 -137 6872 6002 6 821 491 62 0 0 chr4 30972263 30972327 -124657793 + Lx3_Mus LINE L1 6673 6736 -273 6 821 1432 126 112 22 chr4 30972327 30972595 -124657525 - RLTR27 LTR ERVK -17 292 1 6 821 201 139 47 0 chr4 30972641 30972684 -124657436 + A-rich Low_complexity Low_complexity 4 48 0 6 821 200 380 11 32 chr4 30972712 30972807 -124657313 + L2 LINE L2 2389 2481 -938 6 821 302 291 127 8 chr4 30972947 30973065 -124657055 - MER2 DNA MER2_type -195 150 19 6 821 552 255 96 56 chr4 30973088 30973391 -124656729 - MER33 DNA MER1_type -8 316 2 6 821 450 0 0 0 chr4 30974381 30974431 -124655689 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 821 696 12 0 0 chr4 30974431 30974511 -124655609 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 821 405 169 0 0 chr4 30975219 30975302 -124654818 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 821 278 176 0 0 chr4 30975302 30975353 -124654767 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 821 252 0 0 0 chr4 30975353 30975381 -124654739 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 821 249 43 64 0 chr4 30978113 30978160 -124651960 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 6 821 187 265 71 97 chr4 30978583 30978696 -124651424 + MIR SINE MIR 149 258 -4 6 821 252 167 0 40 chr4 30978793 30978868 -124651252 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 821 312 268 79 24 chr4 30980140 30980266 -124649854 + ORR1E LTR MaLR 6 138 -221 6 821 2026 162 21 3 chr4 30980648 30980988 -124649132 + ORR1A1 LTR MaLR 1 346 0 6 821 980 124 19 0 chr4 30980988 30981149 -124648971 + ORR1A1-int LTR MaLR 1 164 -1799 6 821 984 189 0 26 chr4 30981112 30981307 -124648813 - ORR1A4 LTR MaLR -139 190 1 6 821 26 30 0 0 chr4 30983006 30983039 -124647081 + AT_rich Low_complexity Low_complexity 1 33 0 6 821 335 336 159 16 chr4 30983109 30983366 -124646754 - L1MDa LINE L1 -786 5751 5458 6 821 408 286 120 15 chr4 30983380 30983710 -124646410 - L1MDa LINE L1 -3867 2670 2309 6 821 374 327 10 0 chr4 30983932 30984036 -124646084 - Lx8 LINE L1 -232 7241 7137 6 821 528 301 10 35 chr4 30984042 30984291 -124645829 - Lx8 LINE L1 -439 7205 6894 6 821 707 197 15 0 chr4 30984303 30984440 -124645680 - B1_Mus1 SINE Alu 0 148 10 6 821 244 280 58 128 chr4 30984305 30984477 -124645643 - B4A SINE B4 -68 224 65 6 821 695 299 36 0 chr4 30984477 30984671 -124645449 - Lx8 LINE L1 -673 6800 6600 6 821 465 360 21 48 chr4 30984688 30984875 -124645245 - B3A SINE B2 -34 182 1 6 821 1058 286 30 65 chr4 30984880 30985280 -124644840 - Lx8 LINE L1 -878 6595 6210 6 821 300 285 14 0 chr4 30985282 30985426 -124644694 + (TA)n Simple_repeat Simple_repeat 1 146 0 6 821 626 294 130 43 chr4 30985511 30985856 -124644264 + RLTR28B LTR ERVL 9 383 -98 6 821 973 263 141 30 chr4 30985972 30986491 -124643629 - Lx8 LINE L1 -1607 6037 5411 6 821 456 35 0 0 chr4 30986491 30986549 -124643571 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 821 746 296 9 24 chr4 30986555 30986766 -124643354 - B3 SINE B2 -6 210 3 6 821 973 261 161 36 chr4 30986766 30986964 -124643156 - Lx8 LINE L1 -442 5405 5182 6 821 347 199 12 42 chr4 30987002 30987170 -124642950 + (TA)n Simple_repeat Simple_repeat 2 164 0 6 821 221 119 0 23 chr4 30987188 30987231 -124642889 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 6 821 526 278 34 43 chr4 30987236 30987469 -124642651 - Lx8 LINE L1 -688 5159 4929 6 821 642 205 175 0 chr4 30987545 30987711 -124642409 + Lx7 LINE L1 6876 7070 -626 6 821 330 325 61 24 chr4 30987739 30987903 -124642217 + Lx7 LINE L1 7138 7307 -389 6 821 2956 216 36 34 chr4 30987906 30988605 -124641515 - RMER1B Other Other -3 1063 364 6 821 1464 248 44 19 chr4 30988670 30989032 -124641088 - RMER1B Other Other -687 379 9 6 821 627 39 0 0 chr4 30989120 30989198 -124640922 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 821 869 185 108 5 chr4 30990152 30990337 -124639783 - Lx3C LINE L1 -11 6965 6762 6 821 4243 96 15 6 chr4 30990427 30991079 -124639041 + MusHAL1 LINE L1 1310 1967 -745 6 821 6487 136 27 14 chr4 30991075 30992841 -124637279 + Lx LINE L1 4862 6649 -5 6 821 332 323 92 45 chr4 30992952 30993165 -124636955 - ORR1E LTR MaLR -152 218 8 6 821 307 289 49 62 chr4 30993175 30993400 -124636720 - L1MDb LINE L1 -5240 1169 948 6 821 28 0 0 0 chr4 30993552 30993580 -124636540 + AT_rich Low_complexity Low_complexity 1 28 0 6 821 728 328 24 10 chr4 30994273 30994479 -124635641 + B4A SINE B4 71 279 -13 6 821 426 20 0 0 chr4 30994508 30994559 -124635561 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 821 26 0 0 0 chr4 30994736 30994762 -124635358 + AT_rich Low_complexity Low_complexity 1 26 0 6 821 326 336 68 14 chr4 30994898 30995046 -124635074 + L1M5 LINE L1 3582 3737 -2409 6 821 457 295 101 74 chr4 30995049 30995369 -124634751 - ORR1E LTR MaLR -23 356 3 6 821 1473 356 73 41 chr4 30995369 30996105 -124634015 - ORR1E-int LTR MaLR -51 1529 770 6 821 585 366 40 48 chr4 30996749 30997148 -124632972 - ORR1E-int LTR MaLR -860 720 325 6 821 2175 191 8 3 chr4 30997420 30997804 -124632316 - ORR1B1 LTR MaLR -8 386 1 6 821 282 68 0 22 chr4 30998291 30998336 -124631784 + L1MC4 LINE L1 7284 7327 -715 6 821 934 319 36 3 chr4 30998581 30998939 -124631181 + ORR1D2 LTR MaLR 1 370 0 6 821 2759 231 70 21 chr4 31001237 31001903 -124628217 + Lx6 LINE L1 5804 6504 -956 1 821 2950 220 99 16 chr4 31001898 31002572 -124627548 + Lx6 LINE L1 6722 7451 -9 1 821 276 387 82 25 chr4 31004492 31004773 -124625347 - MLT1D LTR MaLR -4 501 205 2 821 3391 25 5 0 chr4 31004835 31005229 -124624891 + MTA_Mm LTR MaLR 1 396 0 3 821 637 233 0 8 chr4 31006057 31006191 -124623929 + B1_Mus2 SINE Alu 2 134 -13 4 821 345 82 0 0 chr4 31006404 31006453 -124623667 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 821 393 310 12 41 chr4 31007797 31008055 -124622065 + GA-rich Low_complexity Low_complexity 1 250 0 6 821 10047 164 6 9 chr4 31008510 31010377 -124619743 - Lx3A LINE L1 -1494 4392 2532 7 821 7755 142 21 108 chr4 31010373 31011466 -124618654 + Lx3A LINE L1 4346 5268 -618 7 821 297 0 0 0 chr4 31011466 31011499 -124618621 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 8 821 8558 135 24 61 chr4 31011499 31012123 -124617997 + Lx3A LINE L1 5269 5913 -1068 7 821 384 22 0 0 chr4 31012123 31012168 -124617952 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 9 821 8558 128 27 13 chr4 31012168 31013230 -124616890 + Lx3A LINE L1 5914 6978 -3 7 821 220 184 0 0 chr4 31013231 31013269 -124616851 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 821 7535 100 7 27 chr4 31013299 31014684 -124615436 + Lx LINE L1 5288 6650 -4 1 821 318 360 106 41 chr4 31014864 31015299 -124614821 + L1M4c LINE L1 1294 1756 -4628 1 821 587 144 0 0 chr4 31016111 31016208 -124613912 + RLTR31A_Mm LTR ERVK 3 99 -485 1 821 8137 168 63 7 chr4 31016209 31018007 -124612113 + Lx3C LINE L1 4152 6086 -890 1 821 2858 49 2 138 chr4 31018007 31018456 -124611664 + RLTR10 LTR ERVK 1 388 -2 1 821 8126 147 15 19 chr4 31018456 31019347 -124610773 + Lx3C LINE L1 6087 6969 -7 1 821 283 267 97 19 chr4 31019392 31019495 -124610625 + B3 SINE B2 38 148 -68 1 821 321 89 0 0 chr4 31019514 31019559 -124610561 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 821 338 305 136 29 chr4 31020078 31020445 -124609675 + L1M4c LINE L1 3847 4269 -2110 1 821 251 299 19 52 chr4 31020683 31020838 -124609282 + L1M4c LINE L1 4318 4467 -1909 1 821 949 151 0 16 chr4 31020943 31021125 -124608995 + GA-rich Low_complexity Low_complexity 2 180 0 1 821 316 328 57 11 chr4 31021410 31021672 -124608448 + L1M4c LINE L1 5315 5588 -788 1 821 259 282 45 34 chr4 31021676 31021764 -124608356 - MTEb LTR MaLR -2 377 289 1 821 21 36 0 0 chr4 31022314 31022342 -124607778 + AT_rich Low_complexity Low_complexity 1 28 0 2 821 428 320 51 34 chr4 31022577 31022755 -124607365 - B3A SINE B2 -10 185 5 2 821 308 78 0 0 chr4 31023673 31023724 -124606396 + Lx2 LINE L1 6946 6996 -1 2 821 302 316 18 92 chr4 31024610 31024774 -124605346 - RMER15 LTR ERVL -420 155 4 2 821 420 284 66 12 chr4 31025258 31025500 -124604620 - L1MA6 LINE L1 -1 6299 6045 2 821 3472 10 0 0 chr4 31026859 31027254 -124602866 + L1Md_A LINE L1 6188 6582 0 2 821 1154 80 0 22 chr4 31027255 31027435 -124602685 + L1Md_F3 LINE L1 6409 6584 0 2 821 302 220 21 21 chr4 31028295 31028388 -124601732 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 2 821 24 0 0 0 chr4 31029492 31029516 -124600604 + AT_rich Low_complexity Low_complexity 1 24 0 2 821 1426 300 41 34 chr4 31030248 31030810 -124599310 + Lx9 LINE L1 6862 7427 -217 2 821 288 0 0 0 chr4 31030820 31030852 -124599268 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 821 27 29 0 0 chr4 31030983 31031017 -124599103 + AT_rich Low_complexity Low_complexity 1 34 0 3 821 1264 71 6 0 chr4 31031446 31031615 -124598505 + L1_Mus1 LINE L1 6396 6565 -2 3 821 405 0 0 0 chr4 31032787 31032832 -124597288 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 821 437 345 50 43 chr4 31033467 31033749 -124596371 + B4A SINE B4 3 286 -6 3 821 619 273 80 7 chr4 31034483 31034634 -124595486 + B3A SINE B2 1 162 -36 3 821 369 0 0 0 chr4 31034673 31034714 -124595406 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 821 30 69 0 0 chr4 31034756 31034814 -124595306 + AT_rich Low_complexity Low_complexity 1 58 0 3 821 21 57 0 0 chr4 31034891 31034926 -124595194 + AT_rich Low_complexity Low_complexity 1 35 0 3 821 253 83 0 0 chr4 31034981 31035017 -124595103 + U3 snRNA snRNA 1 36 -181 3 821 350 326 64 14 chr4 31035016 31035156 -124594964 - MER5B DNA MER1_type -27 151 5 4 821 44 56 0 0 chr4 31035278 31035350 -124594770 + AT_rich Low_complexity Low_complexity 1 72 0 4 821 216 208 0 20 chr4 31035920 31035969 -124594151 + GA-rich Low_complexity Low_complexity 6 53 0 4 821 861 10 0 0 chr4 31036296 31036394 -124593726 + (TC)n Simple_repeat Simple_repeat 2 99 0 4 821 198 103 0 0 chr4 31036394 31036422 -124593698 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 821 277 233 66 16 chr4 31036776 31036837 -124593283 - B4 SINE B4 -168 124 61 4 821 501 238 164 9 chr4 31036860 31037007 -124593113 - MTD LTR MaLR -13 406 220 4 821 447 347 49 27 chr4 31037086 31037311 -124592809 + MTE-int LTR MaLR 242 471 -1109 4 821 348 220 50 17 chr4 31037398 31037518 -124592602 - Lx6 LINE L1 -26 7434 7311 4 821 938 361 51 82 chr4 31037778 31038486 -124591634 + MTE-int LTR MaLR 844 1529 -51 4 821 21 36 0 0 chr4 31039094 31039122 -124590998 + AT_rich Low_complexity Low_complexity 1 28 0 4 821 1342 307 101 32 chr4 31040469 31041142 -124588978 + Lx9 LINE L1 6067 6944 -700 5 821 213 232 18 0 chr4 31041144 31041200 -124588920 + (TTG)n Simple_repeat Simple_repeat 2 58 0 5 821 5442 212 32 7 chr4 31041210 31043263 -124586857 - Lx5 LINE L1 -6 6994 4834 5 821 3857 147 24 25 chr4 31043251 31044000 -124586120 + Lx5 LINE L1 4091 4838 -1039 5 821 1097 310 58 57 chr4 31043994 31044644 -124585476 + Lx9 LINE L1 6908 7558 -86 5 821 30 27 0 0 chr4 31044716 31044753 -124585367 + AT_rich Low_complexity Low_complexity 1 37 0 5 821 30 45 0 0 chr4 31044986 31045030 -124585090 + AT_rich Low_complexity Low_complexity 1 44 0 5 821 280 57 36 36 chr4 31046845 31046900 -124583220 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 821 252 191 207 35 chr4 31047563 31047650 -124582470 + Lx9 LINE L1 5803 5904 -1740 5 821 396 0 0 0 chr4 31047666 31047710 -124582410 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 821 2408 66 93 0 chr4 31048087 31048419 -124581701 - L1_Mus2 LINE L1 -1 6565 6203 5 821 24 0 0 0 chr4 31049280 31049304 -124580816 + AT_rich Low_complexity Low_complexity 1 24 0 6 821 2637 177 17 6 chr4 31049878 31050394 -124579726 + L1_Mur2 LINE L1 4444 4965 -912 6 821 2899 175 39 71 chr4 31050394 31050663 -124579457 + RMER6C LTR ERVK 1 279 -411 6 821 3544 57 2 13 chr4 31050663 31051127 -124578993 + L1Md_F2 LINE L1 6124 6582 0 6 821 2899 175 39 71 chr4 31051127 31051521 -124578599 + RMER6C LTR ERVK 280 643 -47 6 821 1992 199 30 82 chr4 31051524 31052088 -124578032 + L1_Mur2 LINE L1 5146 5680 -200 6 821 10293 26 1 1 chr4 31052079 31053981 -124576139 - L1Md_T LINE L1 0 6582 4683 6 821 4969 43 3 8 chr4 31053981 31054589 -124575531 + IAPEz-int LTR ERVK 5877 6481 0 6 821 2227 122 132 14 chr4 31054589 31055014 -124575106 + IAPLTR2_Mm LTR ERVK 1 475 0 6 821 1867 50 11 9 chr4 31055017 31055451 -124574669 - RLTR10-int LTR ERVK -1438 549 188 6 821 2274 72 118 20 chr4 31055451 31055806 -124574314 - RLTR10 LTR ERVK 0 390 1 6 821 670 291 202 55 chr4 31055816 31056256 -124573864 + Lx6 LINE L1 6815 7319 -141 6 821 219 325 13 0 chr4 31056256 31056333 -124573787 + CT-rich Low_complexity Low_complexity 2 79 0 6 821 27 29 0 0 chr4 31056448 31056482 -124573638 + AT_rich Low_complexity Low_complexity 1 34 0 6 821 23 105 0 0 chr4 31056563 31056649 -124573471 + AT_rich Low_complexity Low_complexity 1 86 0 7 821 185 159 0 22 chr4 31057084 31057129 -124572991 + GA-rich Low_complexity Low_complexity 2 45 0 7 821 24 32 0 0 chr4 31057730 31057761 -124572359 + AT_rich Low_complexity Low_complexity 1 31 0 7 821 1483 344 79 24 chr4 31057931 31058878 -124571242 - Lx8 LINE L1 -181 7292 6341 7 821 261 0 0 0 chr4 31058881 31058910 -124571210 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 821 551 198 85 17 chr4 31058941 31059126 -124570994 + Lx8 LINE L1 5767 5971 -1502 7 821 1007 270 74 21 chr4 31059185 31059522 -124570598 - ORR1E LTR MaLR 0 359 5 7 821 285 29 0 0 chr4 31059573 31059607 -124570513 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 821 802 210 18 12 chr4 31059821 31059985 -124570135 - Lx5 LINE L1 -83 6967 6803 7 821 9140 28 2 0 chr4 31060087 31061824 -124568296 - L1Md_T LINE L1 0 6582 4842 7 821 404 267 45 36 chr4 31061824 31061961 -124568159 - B4 SINE B4 -150 142 5 8 821 398 320 134 17 chr4 31062137 31062487 -124567633 + Charlie2a DNA MER1_type 2463 2853 -8 8 821 1097 89 0 0 chr4 31062681 31062827 -124567293 + B1_Mus2 SINE Alu 1 146 -1 8 102 1928 164 47 8 chr4 31063828 31064190 -124565930 - ORR1C2 LTR MaLR -4 380 5 8 822 333 0 0 0 chr4 31064233 31064270 -124565850 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 822 294 263 61 73 chr4 31064287 31064451 -124565669 + MamGypLTR2b LTR Gypsy 741 902 -20 8 822 945 206 75 10 chr4 31065064 31065265 -124564855 + ORR1C2 LTR MaLR 171 384 0 8 822 2144 161 18 16 chr4 31065556 31065941 -124564179 + ORR1B1 LTR MaLR 1 386 -8 8 822 414 0 0 0 chr4 31065948 31065994 -124564126 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 8 822 431 150 6 13 chr4 31066147 31066245 -124563875 - ORR1A4 LTR MaLR -264 130 1 8 822 8699 175 40 108 chr4 31066245 31067369 -124562751 - ORR1A4-int LTR MaLR 0 1963 857 8 822 3359 58 0 7 chr4 31067369 31067806 -124562314 - L1Md_F2 LINE L1 -13 6569 6136 9 822 8699 175 40 108 chr4 31067806 31068786 -124561334 - ORR1A4-int LTR MaLR -1107 856 1 8 822 416 104 60 0 chr4 31068787 31068854 -124561266 - ORR1A4 LTR MaLR -10 357 287 8 822 832 121 22 15 chr4 31068821 31068955 -124561165 + B1_Mus1 SINE Alu 14 148 0 9 822 1466 212 15 70 chr4 31068915 31069245 -124560875 - ORR1A4 LTR MaLR -17 312 1 8 822 639 273 65 31 chr4 31069601 31069862 -124560258 + L1_Rod LINE L1 5436 5705 -142 9 822 233 29 0 29 chr4 31070000 31070035 -124560085 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 822 1676 315 95 30 chr4 31070402 31071194 -124558926 + Lx8 LINE L1 6193 7040 -433 9 822 657 12 0 0 chr4 31071194 31071278 -124558842 + L1Md_T LINE L1 6499 6582 0 9 822 1676 315 95 30 chr4 31071278 31071345 -124558775 + Lx8 LINE L1 7041 7107 -366 9 822 880 169 11 0 chr4 31071355 31071533 -124558587 + GA-rich Low_complexity Low_complexity 1 180 0 9 822 23 0 0 0 chr4 31071655 31071678 -124558442 + AT_rich Low_complexity Low_complexity 1 23 0 9 822 417 20 0 0 chr4 31073102 31073152 -124556968 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 822 613 338 45 52 chr4 31073782 31074201 -124555919 - MT2A LTR ERVL -111 422 7 9 822 306 0 0 0 chr4 31074753 31074787 -124555333 + (TTAG)n Simple_repeat Simple_repeat 2 35 0 1 822 694 222 82 51 chr4 31074787 31074982 -124555138 - B3 SINE B2 -14 202 2 1 822 4469 63 0 7 chr4 31075215 31075789 -124554331 + L1Md_F2 LINE L1 6001 6570 -12 1 822 371 279 8 8 chr4 31076271 31076378 -124553742 - Lx9 LINE L1 -487 7157 6944 1 822 772 40 0 20 chr4 31076406 31076507 -124553613 + L1_Mus1 LINE L1 6276 6374 -193 1 822 1614 300 72 64 chr4 31076524 31076695 -124553425 - Lx9 LINE L1 -610 7034 6746 1 822 351 0 0 0 chr4 31076695 31076734 -124553386 + (TAG)n Simple_repeat Simple_repeat 1 39 0 1 822 2228 291 72 108 chr4 31076734 31078673 -124551447 - Lx9 LINE L1 -756 6888 4751 1 822 182 37 37 0 chr4 31078673 31078700 -124551420 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 822 2228 267 77 137 chr4 31078700 31079420 -124550700 - Lx9 LINE L1 -1097 4750 4179 1 822 1223 232 134 23 chr4 31079431 31079775 -124550345 + ORR1C2 LTR MaLR 1 382 -2 1 822 21 0 0 0 chr4 31079789 31079810 -124550310 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 307 322 119 98 chr4 31080304 31080590 -124549530 - LTR40c LTR ERVL -28 437 146 1 822 376 355 73 14 chr4 31080809 31081095 -124549025 - L1M5 LINE L1 -2123 4023 3721 1 822 283 208 39 59 chr4 31081394 31081496 -124548624 - Lx7 LINE L1 -18 7678 7579 1 822 220 154 19 19 chr4 31081571 31081624 -124548496 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 822 1637 331 29 34 chr4 31081654 31081973 -124548147 - Lx7 LINE L1 -388 7308 6996 1 822 432 0 0 0 chr4 31081973 31082021 -124548099 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1 822 3796 106 2 25 chr4 31082021 31082582 -124547538 - Lx2 LINE L1 -12 6985 6438 1 822 1637 331 29 34 chr4 31082582 31082961 -124547159 - Lx7 LINE L1 -701 6995 6616 1 822 48 32 0 0 chr4 31083082 31083144 -124546976 + AT_rich Low_complexity Low_complexity 1 62 0 1 822 501 309 53 14 chr4 31083730 31083937 -124546183 + B3 SINE B2 2 216 0 1 822 489 284 20 41 chr4 31084255 31084402 -124545718 + RSINE1 SINE B4 4 147 -18 1 822 432 0 0 0 chr4 31084438 31084486 -124545634 + (TAA)n Simple_repeat Simple_repeat 3 50 0 1 822 358 343 141 41 chr4 31085761 31086080 -124544040 - LTR40b LTR ERVL -3 459 109 1 822 30 77 0 0 chr4 31086252 31086317 -124543803 + AT_rich Low_complexity Low_complexity 1 65 0 1 822 233 329 0 13 chr4 31086341 31086418 -124543702 + RSINE1 SINE B4 3 78 -87 1 822 324 0 0 0 chr4 31087202 31087238 -124542882 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1 822 21 71 0 0 chr4 31087425 31087467 -124542653 + AT_rich Low_complexity Low_complexity 1 42 0 1 822 321 287 0 24 chr4 31087888 31088020 -124542100 - B1_Mm SINE Alu 0 150 21 1 822 719 303 127 29 chr4 31088063 31088403 -124541717 + MLT1B LTR MaLR 14 386 -4 1 822 1042 95 0 20 chr4 31088819 31088969 -124541151 + B1_Mus2 SINE Alu 1 147 0 1 822 234 0 0 0 chr4 31089157 31089183 -124540937 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 822 183 100 0 0 chr4 31089359 31089389 -124540731 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 822 349 176 19 56 chr4 31089707 31089815 -124540305 - L1MA7 LINE L1 -1 6290 6187 1 822 2630 179 36 121 chr4 31090347 31091015 -124539105 - RMER19C LTR ERVK 0 611 1 1 822 263 315 128 87 chr4 31091126 31091345 -124538775 + MER97c DNA MER1_type? 12 239 -851 1 822 236 212 136 0 chr4 31091609 31091675 -124538445 + B3A SINE B2 1 75 -123 1 822 1934 246 62 16 chr4 31092203 31092687 -124537433 - RMER20A LTR ERVK 0 516 11 1 822 416 357 25 49 chr4 31092744 31092906 -124537214 + RSINE1 SINE B4 8 165 0 1 822 194 98 49 0 chr4 31093386 31093427 -124536693 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 822 237 33 0 0 chr4 31093788 31093818 -124536302 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 822 273 29 0 0 chr4 31093908 31093942 -124536178 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 822 237 212 163 12 chr4 31095695 31095781 -124534339 + MIR3 SINE MIR 65 163 -45 1 822 751 301 0 23 chr4 31096458 31096672 -124533448 + B3 SINE B2 1 209 -7 1 822 705 266 114 98 chr4 31097493 31097852 -124532268 - MTE2a LTR MaLR -14 365 1 1 822 21 0 0 0 chr4 31099256 31099277 -124530843 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 259 373 100 62 chr4 31099772 31100012 -124530108 + MER21B LTR ERV1 19 267 -596 1 822 1552 108 5 0 chr4 31100025 31100247 -124529873 + L1_Mm LINE L1 5328 5550 -333 1 822 228 198 35 47 chr4 31100516 31100601 -124529519 + (CAAA)n Simple_repeat Simple_repeat 2 85 0 1 822 893 177 0 19 chr4 31100848 31101009 -124529111 + Lx4B LINE L1 6691 6848 -210 1 822 747 301 45 29 chr4 31101019 31101265 -124528855 - ORR1E LTR MaLR -109 250 1 1 822 23 54 0 0 chr4 31101275 31101312 -124528808 + AT_rich Low_complexity Low_complexity 1 37 0 1 822 1685 232 51 26 chr4 31101665 31102054 -124528066 - Lx5 LINE L1 0 7050 6652 1 822 615 154 29 0 chr4 31102058 31102162 -124527958 - U6 snRNA snRNA 0 107 1 1 822 268 350 20 20 chr4 31102462 31102608 -124527512 + MT2A LTR ERVL 1 146 -387 1 822 1179 297 40 3 chr4 31102479 31102807 -124527313 + MTEb LTR MaLR 18 357 -22 1 822 3450 58 0 0 chr4 31102875 31103304 -124526816 - L1_Mm LINE L1 -210 5673 5245 1 822 1059 54 27 0 chr4 31103304 31103452 -124526668 + L1Md_F2 LINE L1 6429 6580 -2 1 822 198 0 0 0 chr4 31104283 31104305 -124525815 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 822 1010 54 0 0 chr4 31104305 31104434 -124525686 - B1_Mm SINE Alu -9 138 10 1 822 269 340 88 43 chr4 31105142 31105464 -124524656 - MLT1A LTR MaLR 0 374 21 1 822 1493 246 47 67 chr4 31106620 31107191 -124522929 + L1_Rod LINE L1 4001 4560 -1287 1 822 868 182 52 5 chr4 31107234 31107427 -124522693 + L1_Rod LINE L1 4797 4998 -849 1 822 640 226 3 8 chr4 31107465 31107823 -124522297 + CT-rich Low_complexity Low_complexity 1 355 0 1 822 214 167 28 64 chr4 31107826 31107935 -124522185 + C-rich Low_complexity Low_complexity 4 108 0 1 822 683 108 0 9 chr4 31108000 31108112 -124522008 + (CCCTAA)n Simple_repeat Simple_repeat 3 113 0 1 822 530 207 95 26 chr4 31108112 31108301 -124521819 + L1_Rod LINE L1 5018 5219 -628 1 822 1167 237 119 32 chr4 31108304 31108614 -124521506 - ORR1B1 LTR MaLR -57 337 1 1 822 5693 227 134 14 chr4 31108617 31110255 -124519865 + Lx9 LINE L1 5810 7644 0 1 822 998 104 21 0 chr4 31111409 31111553 -124518567 + B1_Mus1 SINE Alu 2 148 0 1 822 231 175 16 16 chr4 31111589 31111653 -124518467 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 1 822 397 315 52 66 chr4 31112120 31112409 -124517711 + RLTR42-int LTR ERVK 1116 1400 -4122 1 822 189 0 0 0 chr4 31115195 31115216 -124514904 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 822 267 343 21 63 chr4 31115248 31115391 -124514729 - RSINE1 SINE B4 -17 148 12 1 822 189 94 0 0 chr4 31115668 31115700 -124514420 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 822 1124 309 43 31 chr4 31115747 31116231 -124513889 + RMER5 LTR ERV1 32 521 -13 1 822 1828 67 8 0 chr4 31116250 31116490 -124513630 - L1_Mus1 LINE L1 -158 6409 6168 1 822 903 37 7 129 chr4 31116490 31116602 -124513518 + L1_Mus1 LINE L1 6432 6539 -28 1 822 258 42 0 59 chr4 31116602 31116653 -124513467 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 822 1134 52 0 0 chr4 31116653 31116787 -124513333 - B1_Mus1 SINE Alu -13 135 2 1 822 903 37 7 129 chr4 31116787 31116828 -124513292 + L1_Mus1 LINE L1 6540 6566 -1 1 822 3424 33 0 0 chr4 31118278 31118674 -124511446 - MTA_Mm LTR MaLR 0 396 1 1 822 5058 79 0 0 chr4 31118912 31119623 -124510497 - L1Md_F2 LINE L1 -665 5218 4508 1 822 2371 42 7 3 chr4 31119621 31119930 -124510190 + L1Md_F2 LINE L1 5277 5586 -297 1 822 8422 34 0 4 chr4 31119930 31120928 -124509192 + L1Md_F2 LINE L1 5587 6580 -2 1 822 181 368 14 14 chr4 31121255 31121324 -124508796 + L2c LINE L2 3258 3326 -61 1 822 501 17 0 0 chr4 31121770 31121828 -124508292 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 822 260 309 42 21 chr4 31122272 31122368 -124507752 - MLT1G1 LTR MaLR -474 105 8 1 822 765 353 110 33 chr4 31123305 31123950 -124506170 + L4 LINE RTE 1079 1773 -256 1 822 27 29 0 0 chr4 31124091 31124125 -124505995 + AT_rich Low_complexity Low_complexity 1 34 0 1 822 23 33 0 0 chr4 31124138 31124168 -124505952 + AT_rich Low_complexity Low_complexity 1 30 0 1 822 1578 218 30 14 chr4 31126115 31126483 -124503637 - ORR1D1 LTR MaLR 0 374 1 1 822 414 0 0 0 chr4 31126670 31126716 -124503404 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 822 270 0 0 0 chr4 31126716 31126746 -124503374 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 822 2054 32 0 0 chr4 31126930 31127181 -124502939 - L1Md_T LINE L1 -244 6338 6088 1 822 1972 30 0 0 chr4 31127181 31127412 -124502708 + L1Md_T LINE L1 6352 6582 0 1 822 5859 68 1 13 chr4 31128170 31128998 -124501122 + L1Md_F2 LINE L1 4768 5585 -298 1 822 7743 65 4 11 chr4 31128999 31130000 -124500120 + L1Md_F2 LINE L1 5587 6580 -2 1 822 966 42 0 0 chr4 31130021 31130140 -124499980 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 1 822 567 0 0 0 chr4 31130340 31130403 -124499717 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 822 309 51 0 0 chr4 31130403 31130441 -124499679 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 822 423 0 0 0 chr4 31131315 31131362 -124498758 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 822 509 274 153 27 chr4 31131603 31131865 -124498255 + MER67C LTR ERV1 212 506 -205 1 822 488 325 9 54 chr4 31133134 31133355 -124496765 + MER67C LTR ERV1 498 708 -3 1 822 197 265 20 0 chr4 31133811 31133860 -124496260 - MER5A DNA MER1_type 0 189 140 1 822 423 0 0 0 chr4 31135734 31135781 -124494339 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 822 526 288 84 22 chr4 31135794 31136021 -124494099 + MLT1B LTR MaLR 30 270 -120 1 822 600 266 109 92 chr4 31136617 31136791 -124493329 - B3A SINE B2 -10 185 9 1 822 331 292 92 39 chr4 31137030 31137183 -124492937 - L1M5 LINE L1 -439 5734 5574 1 822 1218 253 52 94 chr4 31137350 31137734 -124492386 - MTEa LTR MaLR -9 370 3 1 822 2250 101 9 9 chr4 31137991 31138322 -124491798 - L1_Mus3 LINE L1 -8 6630 6300 1 822 2983 95 0 0 chr4 31139052 31139452 -124490668 + MTB LTR MaLR 1 400 0 1 822 972 186 0 73 chr4 31140555 31140787 -124489333 - Lx2 LINE L1 -8 6989 6775 2 822 5696 120 10 7 chr4 31140785 31141701 -124488419 - Lx2 LINE L1 -352 6645 5727 2 822 8711 78 29 6 chr4 31141699 31143513 -124486607 - L1VL4 LINE L1 -1304 2255 400 2 822 334 315 78 78 chr4 31143656 31143938 -124486182 + L2 LINE L2 2335 2616 -803 2 822 543 310 62 12 chr4 31144139 31144510 -124485610 + Lx9 LINE L1 6622 7020 -453 2 822 1288 229 99 14 chr4 31144663 31145127 -124484993 - RMER13B LTR ERVK 0 908 349 2 822 3978 109 13 45 chr4 31145125 31145818 -124484302 + RMER17A LTR ERVK 81 751 0 2 822 2170 138 14 17 chr4 31145818 31146161 -124483959 - RMER13B LTR ERVK -566 342 1 2 822 358 310 88 55 chr4 31146376 31146557 -124483563 - B3A SINE B2 -10 206 20 2 822 241 268 0 0 chr4 31146547 31146603 -124483517 + MTEa LTR MaLR 324 379 0 2 822 234 105 0 0 chr4 31146812 31146850 -124483270 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 822 255 265 72 0 chr4 31146911 31146994 -124483126 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 2 822 1874 74 8 8 chr4 31148235 31148495 -124481625 + L1Md_F2 LINE L1 6308 6567 -15 2 822 260 370 55 35 chr4 31148722 31148921 -124481199 - MIRc SINE MIR -41 227 25 2 822 234 222 0 0 chr4 31149496 31149550 -124480570 + GA-rich Low_complexity Low_complexity 3 56 0 2 822 1122 87 6 11 chr4 31149553 31149728 -124480392 + (GGGAGA)n Simple_repeat Simple_repeat 2 175 0 2 822 7340 61 13 3 chr4 31150876 31151929 -124478191 - L1Md_F2 LINE L1 -3 6579 5516 2 822 372 299 50 21 chr4 31152236 31152376 -124477744 - MLT1A LTR MaLR -22 368 225 2 822 221 169 25 38 chr4 31152388 31152468 -124477652 + GA-rich Low_complexity Low_complexity 3 81 0 2 822 325 327 26 45 chr4 31153023 31153177 -124476943 + MIR3 SINE MIR 2 152 -56 2 822 1187 248 95 204 chr4 31153316 31153777 -124476343 - RMER4B LTR ERVK -10 456 46 2 822 225 354 0 0 chr4 31153957 31154022 -124476098 - MER5A1 DNA MER1_type -101 65 1 2 822 189 0 0 0 chr4 31155609 31155630 -124474490 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 822 22 70 0 0 chr4 31155771 31155814 -124474306 + AT_rich Low_complexity Low_complexity 1 43 0 2 822 1413 36 0 0 chr4 31157213 31157494 -124472626 + (TG)n Simple_repeat Simple_repeat 1 281 0 2 822 924 302 42 78 chr4 31159148 31159507 -124470613 + ORR1E LTR MaLR 8 353 -6 2 822 1188 68 0 0 chr4 31159947 31160094 -124470026 + B1_Mus1 SINE Alu 2 148 0 2 822 31 0 0 0 chr4 31160094 31160125 -124469995 + AT_rich Low_complexity Low_complexity 1 31 0 2 822 336 64 0 0 chr4 31161118 31161165 -124468955 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 822 204 361 101 7 chr4 31161877 31162025 -124468095 - MIRc SINE MIR -59 209 48 2 822 2173 166 83 0 chr4 31163263 31163696 -124466424 + Lx2B LINE L1 5669 6137 -860 2 822 1199 85 0 6 chr4 31163696 31163873 -124466247 + L1Md_F2 LINE L1 6407 6582 0 2 822 4458 166 30 35 chr4 31163899 31164765 -124465355 + Lx2B LINE L1 6139 7000 0 2 822 1872 63 0 0 chr4 31165194 31165431 -124464689 - L1_Mus1 LINE L1 0 6567 6331 2 822 21 0 0 0 chr4 31165596 31165617 -124464503 + AT_rich Low_complexity Low_complexity 1 21 0 2 822 21 82 0 0 chr4 31166434 31166483 -124463637 + AT_rich Low_complexity Low_complexity 1 49 0 2 822 450 0 0 0 chr4 31168841 31168891 -124461229 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 822 1509 223 25 19 chr4 31171775 31172100 -124458020 + ORR1C1 LTR MaLR 2 328 -50 2 822 718 203 0 7 chr4 31172095 31172244 -124457876 + ORR1C1-int LTR MaLR 458 605 -904 2 822 500 211 35 17 chr4 31172246 31172362 -124457758 + ORR1C1-int LTR MaLR 1253 1370 0 2 822 1448 191 167 0 chr4 31172362 31172686 -124457434 + ORR1C1 LTR MaLR 1 378 0 2 822 579 331 68 82 chr4 31173338 31173439 -124456681 - MTD LTR MaLR 0 419 322 2 822 261 0 0 0 chr4 31173439 31173468 -124456652 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 822 1148 37 0 0 chr4 31173470 31173605 -124456515 - B1_Mus2 SINE Alu -11 136 2 2 822 579 331 68 82 chr4 31173605 31173925 -124456195 - MTD LTR MaLR -98 321 1 2 822 456 359 64 28 chr4 31174124 31174342 -124455778 - B4A SINE B4 -14 278 53 2 822 315 319 98 5 chr4 31174636 31174822 -124455298 + MLT2B2 LTR ERVL 76 283 -271 2 822 343 297 27 0 chr4 31174886 31174997 -124455123 + MLT2B2 LTR ERVL 442 555 -7 2 822 242 322 130 54 chr4 31175429 31175613 -124454507 + MLT1J-int LTR MaLR 248 445 -942 2 822 279 0 0 0 chr4 31176331 31176362 -124453758 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 822 201 133 0 0 chr4 31176421 31176451 -124453669 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 2 822 442 179 80 43 chr4 31176451 31176638 -124453482 - RMER17C LTR ERVK -137 273 80 2 822 290 279 11 11 chr4 31176706 31176793 -124453327 + GA-rich Low_complexity Low_complexity 5 91 0 2 822 389 289 19 75 chr4 31178018 31178179 -124451941 + RSINE1 SINE B4 10 161 -4 2 822 339 273 74 0 chr4 31178323 31178444 -124451676 - L1_Mur3 LINE L1 -2519 3361 3232 2 822 414 0 0 0 chr4 31178448 31178494 -124451626 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 822 582 317 45 15 chr4 31178550 31178819 -124451301 - B4A SINE B4 -13 279 3 2 822 536 313 7 7 chr4 31178849 31178997 -124451123 + B1_Mur3 SINE Alu 2 149 0 2 822 477 0 0 0 chr4 31179651 31179704 -124450416 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 822 419 107 0 13 chr4 31179704 31179779 -124450341 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 822 21 57 0 0 chr4 31179891 31179926 -124450194 + AT_rich Low_complexity Low_complexity 1 35 0 2 822 1150 131 25 116 chr4 31180118 31180438 -124449682 + RMER17A2 LTR ERVK 220 510 -396 2 822 776 284 135 33 chr4 31180814 31181237 -124448883 + MLT1D LTR MaLR 6 471 -34 2 822 276 269 157 0 chr4 31182287 31182394 -124447726 - ORR1D2 LTR MaLR -227 132 1 2 822 3425 228 80 5 chr4 31182539 31183353 -124446767 + Lx9 LINE L1 6764 7638 -6 2 822 508 244 0 25 chr4 31183413 31183531 -124446589 + B1F SINE Alu 35 149 0 2 822 358 270 94 16 chr4 31185552 31185680 -124444440 - MER77 LTR ERVL 0 607 470 2 822 276 250 0 0 chr4 31185710 31185770 -124444350 + ORR1E LTR MaLR 39 98 -261 2 822 492 303 57 57 chr4 31185973 31186183 -124443937 - MER77 LTR ERVL -121 486 277 2 822 892 355 71 22 chr4 31186266 31186763 -124443357 - MLT2B3 LTR ERVL -16 499 2 2 822 387 312 62 28 chr4 31186763 31186930 -124443190 - MER77 LTR ERVL -418 189 17 2 822 807 31 0 0 chr4 31186972 31187070 -124443050 + (TC)n Simple_repeat Simple_repeat 2 99 0 2 822 21 0 0 0 chr4 31187462 31187483 -124442637 + AT_rich Low_complexity Low_complexity 1 21 0 2 822 226 250 69 0 chr4 31187703 31187775 -124442345 + RLTR22_Mus LTR ERVK 1244 1320 -488 2 822 762 320 58 0 chr4 31187791 31188050 -124442070 - B4A SINE B4 -14 278 5 2 822 1644 148 10 14 chr4 31188375 31188669 -124441451 - L1_Mus3 LINE L1 -5 6633 6341 2 822 269 311 100 0 chr4 31191407 31191497 -124438623 - PB1 SINE Alu -26 101 3 2 822 947 246 92 46 chr4 31191513 31191868 -124438252 - MTD LTR MaLR -20 399 21 2 822 22 0 0 0 chr4 31192063 31192085 -124438035 + AT_rich Low_complexity Low_complexity 1 22 0 2 822 408 362 39 0 chr4 31193477 31193604 -124436516 + B3A SINE B2 40 171 -27 2 822 180 152 0 0 chr4 31193612 31193645 -124436475 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 2 822 180 143 0 0 chr4 31194793 31194835 -124435285 + (A)n Simple_repeat Simple_repeat 1 42 0 2 823 377 70 18 0 chr4 31195222 31195279 -124434841 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 823 330 26 0 0 chr4 31197707 31197746 -124432374 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 823 198 359 120 20 chr4 31197752 31198053 -124432067 - L2a LINE L2 -2 3424 3094 2 823 257 192 58 0 chr4 31198070 31198122 -124431998 + LTR16E2 LTR ERVL 492 546 -22 2 823 272 299 78 16 chr4 31198390 31198519 -124431601 + MIR SINE MIR 6 142 -120 2 823 258 81 0 0 chr4 31198783 31198820 -124431300 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 823 394 200 0 0 chr4 31198867 31198952 -124431168 - Lx2A LINE L1 0 7008 6924 2 823 196 311 136 57 chr4 31201178 31201318 -124428802 + MIRc SINE MIR 53 203 -65 2 823 4835 161 22 12 chr4 31201358 31202204 -124427916 + L1_Mur2 LINE L1 429 1283 -5803 2 823 14338 132 21 145 chr4 31202194 31202566 -124427554 + L1_Mur2 LINE L1 1642 2015 -3862 2 823 1920 73 15 15 chr4 31202566 31202830 -124427290 + L1Md_F2 LINE L1 6316 6579 -3 2 823 14338 132 21 145 chr4 31202830 31202867 -124427253 + L1_Mur2 LINE L1 2016 2052 -3825 2 823 387 0 0 0 chr4 31202867 31202910 -124427210 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 823 14338 132 21 145 chr4 31202910 31204648 -124425472 + L1_Mur2 LINE L1 2053 3759 -2118 2 823 1000 86 22 28 chr4 31204648 31204828 -124425292 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 823 372 43 0 0 chr4 31204828 31204874 -124425246 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 2 823 315 0 0 0 chr4 31204874 31204908 -124425212 + (GGAGA)n Simple_repeat Simple_repeat 1 35 0 2 823 14338 132 21 145 chr4 31204908 31206306 -124423814 + L1_Mur2 LINE L1 3760 4747 -1130 2 823 23 0 0 0 chr4 31206434 31206457 -124423663 + AT_rich Low_complexity Low_complexity 1 23 0 2 823 252 0 0 0 chr4 31206946 31206974 -124423146 + (A)n Simple_repeat Simple_repeat 1 28 0 2 823 219 36 0 0 chr4 31207286 31207314 -124422806 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 823 549 0 0 0 chr4 31209906 31209967 -124420153 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 823 8121 207 107 109 chr4 31211035 31211453 -124418667 + Lx5 LINE L1 850 1271 -6457 2 823 591 53 0 0 chr4 31211453 31211528 -124418592 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 823 8121 197 38 96 chr4 31211528 31214136 -124415984 + Lx5 LINE L1 1272 3716 -2164 2 823 3303 240 85 32 chr4 31214136 31215868 -124414252 + Lx5 LINE L1 5094 6911 -139 2 823 411 85 17 0 chr4 31215897 31215956 -124414164 + HAL1-3A_ME LINE L1 1959 2018 -840 2 823 280 190 0 0 chr4 31215989 31216047 -124414073 + Lx6 LINE L1 7377 7434 -26 2 823 257 342 118 47 chr4 31218849 31219061 -124411059 + L2a LINE L2 2853 3079 -340 2 823 186 355 0 0 chr4 31219249 31219325 -124410795 + L2a LINE L2 3341 3416 -10 2 823 186 43 0 0 chr4 31219505 31219528 -124410592 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 823 959 93 53 0 chr4 31219538 31219688 -124410432 - L1_Mus3 LINE L1 -5 6633 6476 2 823 22 35 0 0 chr4 31219932 31219961 -124410159 + AT_rich Low_complexity Low_complexity 1 29 0 2 823 1434 311 56 18 chr4 31220155 31220728 -124409392 + Lx9 LINE L1 6383 6977 -667 2 823 243 170 0 36 chr4 31220736 31220757 -124409363 + A-rich Low_complexity Low_complexity 1 21 0 2 823 1179 49 0 0 chr4 31220757 31220900 -124409220 + B1_Mm SINE Alu 1 143 -4 3 823 243 170 0 36 chr4 31220900 31220933 -124409187 + A-rich Low_complexity Low_complexity 22 53 0 3 823 369 0 0 0 chr4 31220937 31220978 -124409142 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 823 316 249 30 24 chr4 31221411 31221577 -124408543 - L1MCc LINE L1 -1667 5274 5111 3 823 329 329 74 26 chr4 31221648 31221960 -124408160 - L1MCc LINE L1 -2556 4385 4059 3 823 565 119 8 17 chr4 31222249 31222369 -124407751 + (TTGG)n Simple_repeat Simple_repeat 1 119 0 3 823 802 332 27 63 chr4 31222589 31222955 -124407165 - MLT1B LTR MaLR -19 371 19 3 823 229 143 84 14 chr4 31223123 31223194 -124406926 - L1ME2z LINE L1 -99 6345 6270 3 823 437 244 207 0 chr4 31223420 31223633 -124406487 - L1MCc LINE L1 -4896 1527 1271 3 823 253 257 29 10 chr4 31223993 31224095 -124406025 - Lx9 LINE L1 -23 7621 7518 3 823 510 314 5 10 chr4 31224095 31224304 -124405816 + Lx9 LINE L1 7224 7431 -213 3 823 210 398 143 0 chr4 31224658 31224756 -124405364 + L2b LINE L2 3246 3357 -18 3 823 295 293 19 70 chr4 31225955 31226168 -124403952 + L1MB3 LINE L1 5286 5487 -693 3 823 394 296 106 0 chr4 31226195 31226374 -124403746 + L1MB3 LINE L1 5599 5796 -375 3 823 483 355 58 6 chr4 31226598 31226941 -124403179 + L1MB3 LINE L1 5816 6176 -7 3 823 622 344 9 14 chr4 31227709 31227924 -124402196 + B4 SINE B4 10 223 -69 3 823 225 0 0 0 chr4 31227924 31227949 -124402171 + (A)n Simple_repeat Simple_repeat 1 25 0 3 823 249 159 0 0 chr4 31228064 31228108 -124402012 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 823 390 42 0 0 chr4 31229460 31229508 -124400612 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 823 549 246 40 11 chr4 31229558 31229735 -124400385 - L1MB3 LINE L1 -215 5968 5787 3 823 284 285 53 48 chr4 31231074 31231262 -124398858 - L1MB3 LINE L1 -678 5502 5314 3 823 376 291 0 18 chr4 31231290 31231402 -124398718 + MLT1D LTR MaLR 394 503 -2 3 823 589 200 42 0 chr4 31234061 31234181 -124395939 - ORR1D1 LTR MaLR 0 374 250 3 823 548 266 8 0 chr4 31234180 31234308 -124395812 - ORR1D1 LTR MaLR -245 129 1 3 823 330 333 83 28 chr4 31234592 31234737 -124395383 + MLT1C LTR MaLR 200 352 -115 3 823 459 0 0 0 chr4 31235642 31235693 -124394427 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 823 210 250 0 0 chr4 31235854 31235926 -124394194 + CT-rich Low_complexity Low_complexity 2 73 0 3 823 231 209 0 0 chr4 31235944 31235987 -124394133 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 3 823 267 222 16 0 chr4 31235987 31236050 -124394070 + CT-rich Low_complexity Low_complexity 4 67 0 3 823 1149 260 80 74 chr4 31236078 31236729 -124393391 - Lx9 LINE L1 -32 7612 6958 3 823 478 338 33 63 chr4 31237043 31237343 -124392777 + L2 LINE L2 2263 2553 -866 3 823 2623 205 70 7 chr4 31237429 31238013 -124392107 - Lx5 LINE L1 -4 7046 6426 3 823 29 28 0 0 chr4 31238733 31238769 -124391351 + AT_rich Low_complexity Low_complexity 1 36 0 3 823 32 26 0 0 chr4 31238786 31238825 -124391295 + AT_rich Low_complexity Low_complexity 1 39 0 3 823 222 341 57 0 chr4 31238827 31238915 -124391205 - RSINE1 SINE B4 -52 113 21 3 823 443 321 0 0 chr4 31238925 31239031 -124391089 - RSINE1 SINE B4 0 165 60 3 823 465 196 59 40 chr4 31239533 31239634 -124390486 + MT2A LTR ERVL 1 103 -498 3 823 270 290 160 41 chr4 31240296 31240353 -124389767 - CYRA11_Mm Unknown Y-chromosome -226 391 220 3 823 717 154 14 29 chr4 31240353 31240493 -124389627 + URR1B DNA MER1_type 83 220 -5 3 823 270 290 160 41 chr4 31240493 31240515 -124389605 - CYRA11_Mm Unknown Y-chromosome -226 219 147 3 823 503 269 0 43 chr4 31241257 31241397 -124388723 - B1_Mus1 SINE Alu -10 138 5 3 823 1479 212 183 33 chr4 31241853 31242311 -124387809 + Lx4B LINE L1 6522 7048 -10 3 823 203 261 0 14 chr4 31242317 31242387 -124387733 + GA-rich Low_complexity Low_complexity 2 70 0 3 823 684 119 0 0 chr4 31242381 31242490 -124387630 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 3 823 1029 271 44 10 chr4 31242491 31242789 -124387331 + Lx7 LINE L1 6856 7163 -533 3 823 189 94 0 0 chr4 31242947 31242979 -124387141 + (T)n Simple_repeat Simple_repeat 1 32 0 3 823 24 77 0 0 chr4 31243099 31243151 -124386969 + AT_rich Low_complexity Low_complexity 1 52 0 3 823 1431 249 97 29 chr4 31243787 31244168 -124385952 + MTD LTR MaLR 5 411 -8 3 823 200 328 171 32 chr4 31244276 31244399 -124385721 + MIRb SINE MIR 55 194 -74 3 823 378 0 0 0 chr4 31244833 31244875 -124385245 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 823 388 331 131 44 chr4 31244917 31245214 -124384906 - MER46C DNA MER2_type -9 329 7 3 823 828 124 0 0 chr4 31247475 31247612 -124382508 + (GA)n Simple_repeat Simple_repeat 2 138 0 3 823 2129 158 18 13 chr4 31248951 31249341 -124380779 - Lx2B LINE L1 -3 6997 6606 3 823 486 0 0 0 chr4 31249341 31249395 -124380725 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 823 378 0 0 0 chr4 31249882 31249924 -124380196 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 823 207 0 0 0 chr4 31251603 31251626 -124378494 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 823 22 0 0 0 chr4 31252907 31252929 -124377191 + AT_rich Low_complexity Low_complexity 1 22 0 3 823 396 0 0 0 chr4 31253089 31253133 -124376987 + (TATG)n Simple_repeat Simple_repeat 4 47 0 3 823 268 268 26 26 chr4 31253963 31254078 -124376042 + A-rich Low_complexity Low_complexity 4 118 0 3 823 369 75 0 0 chr4 31255069 31255122 -124374998 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 823 237 303 91 9 chr4 31257409 31257519 -124372601 - MIRc SINE MIR -102 166 48 3 823 242 103 0 0 chr4 31258337 31258376 -124371744 - B1_Mur4 SINE Alu -8 142 104 3 823 790 314 121 0 chr4 31258434 31258682 -124371438 + B4 SINE B4 6 283 -9 3 823 246 62 0 0 chr4 31258757 31258789 -124371331 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 823 387 0 0 0 chr4 31258789 31258831 -124371289 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 823 392 241 42 17 chr4 31259368 31259486 -124370634 + MER94 DNA AcHobo 3 123 -11 3 823 200 188 0 0 chr4 31262629 31262661 -124367459 + polypurine Low_complexity Low_complexity 1 32 0 3 823 321 47 0 0 chr4 31263695 31263738 -124366382 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 823 224 30 30 0 chr4 31263971 31264004 -124366116 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 823 291 54 0 0 chr4 31264289 31264326 -124365794 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 823 11145 185 45 16 chr4 31266195 31267039 -124363081 + Lx5 LINE L1 3434 4271 -1606 3 823 540 45 0 0 chr4 31267039 31267106 -124363014 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3 823 11145 185 45 16 chr4 31267106 31267690 -124362430 + Lx5 LINE L1 4272 4895 -982 3 823 669 47 0 0 chr4 31267690 31267775 -124362345 + (GA)n Simple_repeat Simple_repeat 1 85 0 3 823 207 0 0 0 chr4 31267775 31267797 -124362323 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 3 823 11145 185 45 16 chr4 31267797 31268733 -124361387 + Lx5 LINE L1 4896 5867 -10 3 823 248 339 0 42 chr4 31268753 31268873 -124361247 - RMER12 LTR ERVK -471 851 737 3 823 3131 234 98 40 chr4 31268875 31269882 -124360238 + Lx5 LINE L1 5936 7053 -5 3 823 220 283 109 30 chr4 31272689 31272785 -124357335 + MIRc SINE MIR 15 111 -157 3 823 1161 118 0 0 chr4 31274824 31275002 -124355118 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 823 7367 63 4 9 chr4 31275413 31276402 -124353718 - L1Md_F2 LINE L1 -1 6581 5593 3 823 317 37 19 0 chr4 31276429 31276483 -124353637 + L1Md_F2 LINE L1 6528 6582 0 3 823 685 275 161 3 chr4 31276568 31276913 -124353207 - Lx7 LINE L1 -1787 5909 5507 3 823 660 266 98 20 chr4 31276910 31277156 -124352964 + Lx8 LINE L1 7175 7439 -34 3 823 2164 271 65 38 chr4 31277501 31277832 -124352288 - L1_Mur3 LINE L1 -266 5614 5277 3 823 180 77 0 0 chr4 31277832 31277858 -124352262 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 823 1918 273 65 38 chr4 31277858 31278422 -124351698 - L1_Mur3 LINE L1 -604 5276 4695 3 823 500 349 84 9 chr4 31278421 31278756 -124351364 + Lx8 LINE L1 6982 7341 -132 3 823 37 90 0 0 chr4 31278836 31278936 -124351184 + AT_rich Low_complexity Low_complexity 1 100 0 3 823 366 276 67 39 chr4 31279189 31279472 -124350648 + L1_Rod LINE L1 1475 1771 -4076 3 823 1630 221 19 8 chr4 31279543 31279913 -124350207 - ORR1D1 LTR MaLR 0 374 1 3 823 531 0 0 0 chr4 31279945 31280004 -124350116 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 3 823 534 346 5 36 chr4 31280245 31280437 -124349683 + B4A SINE B4 107 292 0 3 823 252 248 9 9 chr4 31280503 31280614 -124349506 + L1_Rod LINE L1 2607 2717 -3163 3 823 1309 191 120 126 chr4 31280996 31281321 -124348799 - ORR1B1 LTR MaLR 0 329 8 3 823 943 17 16 8 chr4 31281321 31281442 -124348678 + (CCCTAA)n Simple_repeat Simple_repeat 2 123 0 3 823 3690 42 7 11 chr4 31281447 31281908 -124348212 - L1Md_F3 LINE L1 -14 6570 6112 3 823 1379 68 16 0 chr4 31281908 31282099 -124348021 + L1Md_F3 LINE L1 5922 6115 -467 3 823 1346 214 52 21 chr4 31282857 31283249 -124346871 + Lx4B LINE L1 6654 7054 -4 3 823 1078 196 53 0 chr4 31283247 31283492 -124346628 + Lx5 LINE L1 5264 5521 -356 3 823 7841 40 5 0 chr4 31283493 31284779 -124345341 - L1Md_F2 LINE L1 0 6582 5291 3 823 3940 199 52 7 chr4 31284779 31285744 -124344376 + Lx5 LINE L1 5525 6545 -505 3 823 646 283 145 4 chr4 31285738 31285965 -124344155 + Lx5 LINE L1 6789 7047 -3 3 823 705 319 129 0 chr4 31285987 31286304 -124343816 + Lx8 LINE L1 6393 6750 -723 3 823 1766 199 5 41 chr4 31286370 31286764 -124343356 + RMER19B LTR ERVK 159 664 -238 3 823 522 0 0 0 chr4 31286799 31286857 -124343263 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 823 549 44 0 0 chr4 31286857 31286925 -124343195 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 823 727 342 102 29 chr4 31286928 31287487 -124342633 + Lx8 LINE L1 6865 7464 -9 3 823 940 184 46 0 chr4 31287580 31287797 -124342323 + L1Md_A LINE L1 211 437 -6287 3 823 180 0 0 0 chr4 31288777 31288797 -124341323 + (A)n Simple_repeat Simple_repeat 1 20 0 3 823 401 351 31 16 chr4 31290172 31290366 -124339754 + MER58A DNA MER1_type 11 207 -17 3 823 287 283 104 40 chr4 31291133 31291258 -124338862 + MT2B LTR ERVL 148 280 -321 3 823 609 157 26 23 chr4 31291154 31291275 -124338845 + B1_Mur3 SINE Alu 6 138 -10 3 823 1569 218 59 31 chr4 31294876 31294952 -124335168 - Lx9 LINE L1 0 7644 7569 3 823 252 86 0 0 chr4 31294952 31294987 -124335133 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 823 1569 218 59 31 chr4 31294987 31295398 -124334722 - Lx9 LINE L1 -76 7568 7143 3 823 679 220 21 16 chr4 31295407 31295520 -124334600 - RMER1B Other Other -12 1054 945 3 823 549 0 0 0 chr4 31295520 31295581 -124334539 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 823 679 220 21 16 chr4 31295581 31295656 -124334464 - RMER1B Other Other -122 944 867 3 823 1683 257 105 32 chr4 31295676 31296337 -124333783 - RMER1B Other Other -546 520 3 3 823 815 259 5 5 chr4 31296411 31296624 -124333496 - Lx9 LINE L1 -491 7153 6941 3 823 321 264 29 42 chr4 31296738 31296862 -124333258 - MLT1B LTR MaLR -10 380 245 4 823 185 0 40 0 chr4 31298218 31298243 -124331877 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 823 942 95 73 0 chr4 31298245 31298382 -124331738 - B1_Mm SINE Alu 0 147 1 4 823 759 318 147 15 chr4 31298877 31299279 -124330841 + MLT1D LTR MaLR 2 456 -49 4 823 764 279 18 5 chr4 31299386 31299606 -124330514 - ID_B1 SINE B4 0 224 2 4 823 275 318 69 38 chr4 31299690 31299850 -124330270 - MLT1B LTR MaLR -449 223 59 4 823 21 36 0 0 chr4 31300446 31300474 -124329646 + AT_rich Low_complexity Low_complexity 1 28 0 4 823 1920 74 81 4 chr4 31300479 31300751 -124329369 - L1_Mus2 LINE L1 -2 6564 6272 4 823 25 0 0 0 chr4 31301127 31301152 -124328968 + AT_rich Low_complexity Low_complexity 1 25 0 4 823 396 0 0 0 chr4 31301184 31301228 -124328892 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 823 453 299 31 8 chr4 31301263 31301391 -124328729 - B4 SINE B4 -81 211 81 4 823 391 317 55 6 chr4 31301509 31301690 -124328430 - Lx8 LINE L1 -102 7371 7182 4 823 1409 278 17 45 chr4 31301680 31301796 -124328324 - Lx8 LINE L1 -814 6659 6543 4 823 1772 136 98 108 chr4 31301796 31302276 -124327844 + IAPLTR2_Mm LTR ERVK 1 475 0 4 823 1409 278 17 45 chr4 31302276 31302629 -124327491 - Lx8 LINE L1 -931 6542 6203 4 823 246 62 0 0 chr4 31302644 31302676 -124327444 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 823 210 200 44 0 chr4 31302979 31303024 -124327096 - B4 SINE B4 -200 92 46 4 823 1474 269 69 15 chr4 31303058 31303451 -124326669 + MTD LTR MaLR 6 419 0 4 823 1164 185 36 31 chr4 31304587 31304810 -124325310 + URR1B DNA MER1_type 1 224 -1 4 823 381 301 124 0 chr4 31305312 31305425 -124324695 + RSINE1 SINE B4 4 130 -35 4 823 1984 193 91 23 chr4 31305678 31306207 -124323913 - Lx9 LINE L1 -8 7636 7072 4 823 22 35 0 0 chr4 31309079 31309108 -124321012 + AT_rich Low_complexity Low_complexity 1 29 0 4 823 321 26 0 0 chr4 31309964 31310002 -124320118 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 823 218 158 17 50 chr4 31310294 31310354 -124319766 + (TATAA)n Simple_repeat Simple_repeat 1 58 0 4 823 469 288 141 0 chr4 31310508 31310678 -124319442 - LTR50 LTR ERVL -102 693 500 4 823 343 341 0 22 chr4 31311005 31311140 -124318980 - MIR SINE MIR -101 161 30 4 823 440 274 93 8 chr4 31312159 31312277 -124317843 + B1_Mur2 SINE Alu 1 128 -21 4 823 258 32 0 0 chr4 31312280 31312311 -124317809 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 823 1556 308 68 49 chr4 31312947 31313781 -124316339 + Lx8 LINE L1 6184 7033 -440 4 823 291 272 48 81 chr4 31316591 31316715 -124313405 + MLT1A1 LTR MaLR 288 407 -1 4 823 798 242 24 0 chr4 31316958 31317169 -124312951 + B3 SINE B2 1 216 0 4 823 522 75 0 0 chr4 31317266 31317346 -124312774 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 823 354 45 0 0 chr4 31317348 31317392 -124312728 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 4 823 915 261 163 55 chr4 31317438 31318051 -124312069 + Lx9 LINE L1 5876 6554 -1090 4 823 932 193 127 4 chr4 31318045 31318290 -124311830 + Lx9 LINE L1 7328 7602 -42 4 823 21 36 0 0 chr4 31318369 31318397 -124311723 + AT_rich Low_complexity Low_complexity 1 28 0 4 823 462 79 0 0 chr4 31318416 31318479 -124311641 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 823 497 175 10 0 chr4 31320227 31320330 -124309790 + (CTATA)n Simple_repeat Simple_repeat 1 104 0 4 823 224 348 42 14 chr4 31320681 31320824 -124309296 - L3 LINE CR1 -288 4201 4055 4 823 708 301 90 14 chr4 31321115 31321337 -124308783 - MTEa LTR MaLR -140 239 1 4 823 1915 158 3 31 chr4 31321547 31321823 -124308297 + RLTR10E LTR ERVK 1 276 -35 4 823 3125 26 2 85 chr4 31321823 31322246 -124307874 + RLTR10 LTR ERVK 1 388 -2 4 823 1915 158 3 31 chr4 31322246 31322289 -124307831 + RLTR10E LTR ERVK 277 311 0 4 823 270 324 34 54 chr4 31323168 31323315 -124306805 - MIRb SINE MIR -5 263 120 4 823 409 268 63 35 chr4 31324577 31324720 -124305400 - B1F1 SINE Alu -2 147 1 4 823 581 304 13 110 chr4 31325825 31326124 -124303996 + B4A SINE B4 1 270 -22 4 823 216 0 0 0 chr4 31326152 31326176 -124303944 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 824 345 197 0 0 chr4 31326741 31326812 -124303308 + (TATG)n Simple_repeat Simple_repeat 2 72 0 4 824 313 293 49 13 chr4 31327070 31327295 -124302825 - L1M5 LINE L1 -1503 4643 4411 4 824 3218 65 5 2 chr4 31327807 31328224 -124301896 - L1_Mus3 LINE L1 -8 6630 6213 4 824 893 302 16 76 chr4 31328247 31328344 -124301776 + B4A SINE B4 1 79 -213 4 824 201 74 0 0 chr4 31328344 31328371 -124301749 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 824 893 302 16 76 chr4 31328371 31328577 -124301543 + B4A SINE B4 80 286 -6 4 824 318 148 0 0 chr4 31328581 31328635 -124301485 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 824 2328 97 3 0 chr4 31329147 31329466 -124300654 + ORR1A2 LTR MaLR 1 320 -7 4 824 645 105 0 0 chr4 31330757 31330852 -124299268 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 4 824 225 0 0 0 chr4 31331856 31331881 -124298239 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 824 210 105 0 0 chr4 31333851 31333889 -124296231 + (T)n Simple_repeat Simple_repeat 1 38 0 4 824 658 113 217 0 chr4 31333893 31334008 -124296112 - B1_Mur1 SINE Alu 0 149 10 4 824 228 274 31 31 chr4 31335862 31335926 -124294194 - L2b LINE L2 -1 3374 3311 4 824 1298 211 52 179 chr4 31336501 31336941 -124293179 + ORR1C2 LTR MaLR 1 384 0 4 824 1002 87 0 7 chr4 31341984 31342123 -124287997 + L1_Mus2 LINE L1 6429 6566 0 4 824 2437 176 27 10 chr4 31342311 31342725 -124287395 - MTC LTR MaLR 0 421 1 4 824 983 132 0 14 chr4 31342891 31343037 -124287083 + B1_Mur3 SINE Alu 2 145 -4 4 824 264 59 0 0 chr4 31343178 31343212 -124286908 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 824 353 363 37 37 chr4 31343979 31344142 -124285978 - MIR SINE MIR -38 224 62 4 824 307 311 92 98 chr4 31344207 31344371 -124285749 + RSINE1 SINE B4 3 165 0 4 824 198 0 0 0 chr4 31344463 31344485 -124285635 + (CACTC)n Simple_repeat Simple_repeat 4 25 0 4 824 248 256 25 25 chr4 31345241 31345321 -124284799 - MADE2 DNA Mariner 0 80 1 4 824 903 174 133 0 chr4 31345612 31345807 -124284313 - MTD LTR MaLR -113 306 86 4 824 183 156 0 0 chr4 31346170 31346202 -124283918 + (CTA)n Simple_repeat Simple_repeat 2 33 0 4 824 432 0 0 0 chr4 31346205 31346253 -124283867 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 824 1588 42 16 16 chr4 31348991 31349184 -124280936 - B2_Mm1a SINE B2 0 193 1 4 824 189 107 0 0 chr4 31349327 31349355 -124280765 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 824 963 86 0 0 chr4 31349355 31349483 -124280637 - B1_Mus1 SINE Alu -1 147 20 4 824 207 0 0 0 chr4 31349653 31349676 -124280444 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 4 824 1046 131 11 0 chr4 31349676 31349852 -124280268 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 824 194 0 39 0 chr4 31351029 31351055 -124279065 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 4 824 260 244 32 53 chr4 31354223 31354318 -124275802 - MIRc SINE MIR -3 265 173 4 824 535 296 94 56 chr4 31354494 31354727 -124275393 + MLT2B2 LTR ERVL 97 338 -177 4 824 282 265 138 83 chr4 31355588 31355769 -124274351 + LTR82A LTR ERVL 294 484 -388 4 824 384 350 194 29 chr4 31355921 31356750 -124273370 + L2b LINE L2 2143 3097 -278 4 824 975 282 40 20 chr4 31357210 31357460 -124272660 + B4A SINE B4 26 280 -12 4 824 1043 234 34 0 chr4 31357474 31357683 -124272437 + B3 SINE B2 1 216 0 4 824 279 270 191 0 chr4 31357704 31357793 -124272327 - MLT1A0 LTR MaLR -31 334 229 4 824 246 300 0 70 chr4 31357850 31357936 -124272184 - MLT1A0 LTR MaLR -278 87 8 4 824 837 199 14 14 chr4 31358130 31358278 -124271842 + B1_Mur1 SINE Alu 1 148 -1 4 824 211 146 18 18 chr4 31358279 31358335 -124271785 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 4 824 186 128 0 0 chr4 31358379 31358418 -124271702 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 4 824 453 248 57 0 chr4 31358445 31358550 -124271570 - PB1D9 SINE Alu -7 113 3 4 824 21 0 0 0 chr4 31358574 31358595 -124271525 + AT_rich Low_complexity Low_complexity 1 21 0 4 824 1227 78 19 6 chr4 31359852 31360403 -124269717 + (TAGA)n Simple_repeat Simple_repeat 1 558 0 4 824 25 51 0 0 chr4 31360434 31360473 -124269647 + AT_rich Low_complexity Low_complexity 1 39 0 4 824 637 292 22 0 chr4 31360636 31360814 -124269306 - Lx5 LINE L1 0 7050 6869 4 824 458 334 63 40 chr4 31361499 31361945 -124268175 + L1MEc LINE L1 938 1393 -5007 4 824 247 314 68 21 chr4 31362165 31362357 -124267763 + L1MEc LINE L1 2989 3189 -3130 4 824 860 277 14 40 chr4 31362393 31362615 -124267505 + B3 SINE B2 1 216 0 4 824 226 245 57 0 chr4 31362645 31362698 -124267422 + B1F1 SINE Alu 9 64 -85 4 824 304 273 77 57 chr4 31363067 31363261 -124266859 + L1ME2z LINE L1 5833 6030 -414 4 824 252 190 17 17 chr4 31363395 31363474 -124266646 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 824 276 308 181 36 chr4 31363482 31363620 -124266500 - RSINE1 SINE B4 -6 159 2 4 824 768 292 121 23 chr4 31363667 31363923 -124266197 + B4A SINE B4 12 292 0 4 824 1022 208 142 64 chr4 31364462 31364622 -124265498 + ORR1C2 LTR MaLR 9 176 -208 4 824 612 0 0 0 chr4 31364622 31364690 -124265430 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 824 1022 227 215 25 chr4 31364690 31364856 -124265264 + ORR1C2 LTR MaLR 177 384 0 4 824 251 315 64 9 chr4 31365384 31365493 -124264627 - MIR3 SINE MIR -5 203 89 4 824 232 270 174 33 chr4 31365797 31365889 -124264231 + L2c LINE L2 3283 3387 0 4 824 899 43 9 0 chr4 31366885 31367001 -124263119 + B1_Mm SINE Alu 31 147 0 4 824 189 178 0 0 chr4 31367004 31367049 -124263071 + A-rich Low_complexity Low_complexity 1 45 0 4 824 2397 289 93 8 chr4 31367081 31367983 -124262137 + Lx9 LINE L1 6451 7429 -215 4 824 23 33 0 0 chr4 31368077 31368107 -124262013 + AT_rich Low_complexity Low_complexity 1 30 0 5 824 242 388 60 50 chr4 31368306 31368575 -124261545 + L2a LINE L2 3094 3410 -16 5 824 225 0 0 0 chr4 31369407 31369432 -124260688 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 824 13519 164 20 86 chr4 31370743 31373413 -124256707 - L1VL2 LINE L1 -1833 4050 1587 5 824 225 0 0 0 chr4 31373413 31373438 -124256682 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 824 13519 119 4 32 chr4 31373438 31374563 -124255557 - L1VL2 LINE L1 -4297 1586 470 5 824 3432 179 100 20 chr4 31374565 31375195 -124254925 + Lx7 LINE L1 4337 4974 -906 5 824 255 103 0 0 chr4 31375195 31375234 -124254886 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 824 3432 179 100 20 chr4 31375234 31375450 -124254670 + Lx7 LINE L1 4975 5244 -636 5 824 486 0 0 0 chr4 31375450 31375504 -124254616 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 824 3432 179 100 20 chr4 31375504 31375550 -124254570 + Lx7 LINE L1 5245 5300 -580 5 824 2808 218 77 138 chr4 31375550 31375712 -124254408 - RLTR25B LTR ERVK 0 1103 949 5 824 1032 106 0 0 chr4 31375712 31375891 -124254229 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 824 3769 185 90 44 chr4 31375891 31376903 -124253217 - RLTR25B LTR ERVK -155 948 1 5 824 2357 184 102 36 chr4 31376903 31377636 -124252484 + Lx7 LINE L1 5296 6095 -1601 5 824 3242 225 55 10 chr4 31377635 31377748 -124252372 + Lx7 LINE L1 6332 6449 -1247 5 824 1705 138 75 141 chr4 31377748 31378187 -124251933 + RMER17C LTR ERVK 1 410 0 5 824 3242 225 55 10 chr4 31378187 31378778 -124251342 + Lx7 LINE L1 6450 7068 -628 5 824 499 168 120 15 chr4 31378772 31378905 -124251215 - Lx7 LINE L1 -1516 6180 6034 5 824 380 20 20 0 chr4 31379960 31380009 -124250111 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 824 297 0 0 0 chr4 31380480 31380513 -124249607 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 824 2842 143 34 67 chr4 31384102 31384566 -124245554 - RLTR28 LTR ERVL -4 520 80 5 824 438 20 0 0 chr4 31384566 31384617 -124245503 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 824 2842 143 34 67 chr4 31384617 31384690 -124245430 - RLTR28 LTR ERVL -445 79 1 5 824 1242 188 4 18 chr4 31385426 31385654 -124244466 + URR1B DNA MER1_type 1 225 0 5 824 243 61 0 0 chr4 31387357 31387390 -124242730 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 824 902 301 66 63 chr4 31387477 31387888 -124242232 - Lx9 LINE L1 -506 7138 6727 5 824 643 335 45 22 chr4 31387883 31388196 -124241924 + Lx9 LINE L1 7008 7456 -188 5 824 423 0 0 0 chr4 31388196 31388243 -124241877 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 824 559 371 56 14 chr4 31388243 31388344 -124241776 + Lx9 LINE L1 7329 7437 -36 5 824 1062 65 0 0 chr4 31390106 31390245 -124239875 + (TTC)n Simple_repeat Simple_repeat 3 141 0 5 824 339 167 0 0 chr4 31390248 31390314 -124239806 + CT-rich Low_complexity Low_complexity 3 68 0 5 824 325 189 65 39 chr4 31391893 31391970 -124238150 + HAL1-3A_ME LINE L1 1973 2051 -807 5 824 21 0 0 0 chr4 31392345 31392366 -124237754 + AT_rich Low_complexity Low_complexity 1 21 0 5 824 243 0 0 0 chr4 31394154 31394181 -124235939 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 824 297 0 0 0 chr4 31394263 31394296 -124235824 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 824 4269 30 0 0 chr4 31394311 31394803 -124235317 - L1Md_T LINE L1 0 6582 6091 5 824 1061 30 0 0 chr4 31394803 31394936 -124235184 + L1_Mm LINE L1 5624 5756 -127 5 824 245 432 31 22 chr4 31395015 31395240 -124234880 + L3 LINE CR1 4051 4277 -212 5 824 196 371 94 9 chr4 31395270 31395376 -124234744 - L2b LINE L2 -40 3335 3221 5 824 413 311 59 7 chr4 31396379 31396515 -124233605 + MLT1B LTR MaLR 248 390 0 5 824 336 344 11 0 chr4 31396848 31396938 -124233182 + MLT1I LTR MaLR 295 385 -26 5 824 1133 267 46 62 chr4 31397931 31398147 -124231973 + RMER6A LTR ERVK 110 325 -395 5 824 549 42 0 0 chr4 31398147 31398219 -124231901 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 824 1339 209 59 38 chr4 31398219 31398675 -124231445 + RMER6A LTR ERVK 326 720 0 5 824 2471 241 65 3 chr4 31398850 31399560 -124230560 + L1_Mur3 LINE L1 39 792 -6936 5 824 2242 137 64 29 chr4 31399568 31400019 -124230101 + L1_Mur3 LINE L1 2532 2998 -2882 5 824 936 140 1 0 chr4 31400131 31400303 -124229817 - L1_Mur2 LINE L1 -864 5279 5113 5 824 23 68 0 0 chr4 31400595 31400639 -124229481 + AT_rich Low_complexity Low_complexity 1 44 0 5 824 3053 142 8 8 chr4 31401807 31402303 -124227817 - Lx4A LINE L1 -9 7049 6554 5 824 4276 140 40 27 chr4 31402303 31403282 -124226838 - Lx4A LINE L1 -697 6361 5378 5 824 5789 165 119 112 chr4 31403300 31404627 -124225493 - L1_Mus2 LINE L1 -1 6565 5363 5 824 302 100 50 0 chr4 31404627 31404687 -124225433 - L1Md_F2 LINE L1 0 6582 6520 5 824 5789 169 93 125 chr4 31404687 31404708 -124225412 - L1_Mur2 LINE L1 -515 5362 5362 5 824 1195 55 0 0 chr4 31404708 31404854 -124225266 - B1_Mus1 SINE Alu -2 146 1 5 824 5789 169 93 125 chr4 31404854 31406024 -124224096 - L1_Mus2 LINE L1 -515 5362 4075 5 824 845 258 306 18 chr4 31406024 31406441 -124223679 + RLTR20C LTR ERVK 1 566 -12 5 824 279 0 0 0 chr4 31406441 31406472 -124223648 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 824 15157 121 33 27 chr4 31406476 31408470 -124221650 - L1_Mur2 LINE L1 -1803 4074 2070 5 824 368 20 20 0 chr4 31408470 31408519 -124221601 + (TGG)n Simple_repeat Simple_repeat 1 50 0 5 824 15157 141 56 17 chr4 31408519 31410130 -124219990 - L1_Mur2 LINE L1 -3808 2069 389 5 824 709 119 32 0 chr4 31410450 31410576 -124219544 + GA-rich Low_complexity Low_complexity 2 131 0 5 824 934 152 51 0 chr4 31412583 31412761 -124217359 + Lx2B LINE L1 6808 6994 -6 5 824 309 151 0 0 chr4 31412845 31412898 -124217222 + GA-rich Low_complexity Low_complexity 2 54 0 5 824 491 132 11 0 chr4 31412906 31412997 -124217123 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 824 770 171 35 116 chr4 31413368 31413566 -124216554 + B2_Mm2 SINE B2 4 185 -10 5 824 293 284 36 9 chr4 31414344 31414454 -124215666 + L1M7 LINE L1 2125 2237 -3981 5 824 767 159 222 0 chr4 31415263 31415439 -124214681 + B3 SINE B2 2 216 0 5 824 21 0 0 0 chr4 31415733 31415754 -124214366 + AT_rich Low_complexity Low_complexity 1 21 0 5 824 406 360 37 25 chr4 31415982 31416227 -124213893 + L1MC4 LINE L1 6793 7040 -1002 5 824 396 71 0 0 chr4 31418148 31418204 -124211916 + (TCTG)n Simple_repeat Simple_repeat 4 59 0 5 824 3877 223 98 35 chr4 31418250 31418453 -124211667 - Lx7 LINE L1 -13 7683 7328 5 824 387 125 0 0 chr4 31418453 31418525 -124211595 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 824 3877 222 101 37 chr4 31418525 31419456 -124210664 - Lx7 LINE L1 -247 7449 6498 5 824 198 0 0 0 chr4 31420392 31420414 -124209706 + (A)n Simple_repeat Simple_repeat 1 22 0 5 824 3005 119 18 0 chr4 31422622 31423128 -124206992 - L1_Mur1 LINE L1 -2785 3101 2587 5 824 6585 39 0 0 chr4 31423143 31423923 -124206197 - L1Md_T LINE L1 0 6582 5803 5 824 242 247 143 0 chr4 31423939 31424016 -124206104 + B2_Mm2 SINE B2 5 92 -103 5 824 1170 133 102 0 chr4 31423998 31424194 -124205926 + URR1B DNA MER1_type 10 225 0 5 824 247 49 49 0 chr4 31424278 31424319 -124205801 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 824 411 134 0 0 chr4 31424319 31424401 -124205719 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 824 23 0 0 0 chr4 31424806 31424829 -124205291 + AT_rich Low_complexity Low_complexity 1 23 0 5 824 326 331 89 16 chr4 31424860 31425050 -124205070 + L1M5 LINE L1 4557 4760 -1386 5 824 306 265 24 12 chr4 31425393 31425477 -124204643 - B3 SINE B2 0 216 132 5 824 1977 110 33 21 chr4 31425874 31426230 -124203890 - Lx4B LINE L1 -1402 5656 5288 5 824 5134 221 25 4 chr4 31426230 31427380 -124202740 + Lx5 LINE L1 5877 7050 0 5 824 567 208 25 38 chr4 31428216 31428376 -124201744 + Lx6 LINE L1 6067 6224 -1236 5 824 2127 262 168 23 chr4 31428394 31429081 -124201039 + Lx6 LINE L1 6518 7310 -150 5 824 339 25 0 0 chr4 31429081 31429121 -124200999 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 824 2127 262 168 23 chr4 31429121 31429236 -124200884 + Lx6 LINE L1 7311 7432 -28 5 824 7617 32 17 0 chr4 31429236 31430137 -124199983 + L1Md_F2 LINE L1 5667 6582 0 5 824 2127 262 168 23 chr4 31430137 31430149 -124199971 + Lx6 LINE L1 7433 7449 -11 5 824 474 278 222 34 chr4 31431873 31432194 -124197926 + MLT1C LTR MaLR 1 382 -85 5 824 22 70 0 0 chr4 31432640 31432683 -124197437 + AT_rich Low_complexity Low_complexity 1 43 0 5 824 414 0 0 0 chr4 31435394 31435440 -124194680 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 824 378 61 0 0 chr4 31435440 31435488 -124194632 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 5 824 980 289 144 19 chr4 31435675 31436035 -124194085 - MTD LTR MaLR -14 405 1 5 824 710 239 33 5 chr4 31437764 31437978 -124192142 + Lx8 LINE L1 6968 7187 -286 5 824 871 301 43 40 chr4 31437987 31438333 -124191787 + RMER15 LTR ERVL 217 563 -12 5 824 192 40 0 0 chr4 31438419 31438444 -124191676 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 824 1047 88 0 0 chr4 31438444 31438580 -124191540 - B1_Mus1 SINE Alu -12 136 1 5 824 457 328 42 21 chr4 31439515 31439845 -124190275 + L1M2 LINE L1 5414 5750 -550 5 824 378 0 0 0 chr4 31439974 31440016 -124190104 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 824 2446 86 0 0 chr4 31440151 31440488 -124189632 - L1_Mm LINE L1 -77 5806 5470 5 824 1563 67 5 0 chr4 31440488 31440696 -124189424 + L1_Mus1 LINE L1 6359 6567 0 5 824 235 256 96 81 chr4 31442121 31442257 -124187863 - MLT1C LTR MaLR -245 222 85 5 824 1698 230 55 20 chr4 31442279 31442338 -124187782 - MTC LTR MaLR 0 421 362 5 824 1945 132 6 63 chr4 31442338 31442687 -124187433 - ORR1A4 LTR MaLR 0 329 1 5 824 1698 230 55 20 chr4 31442687 31443030 -124187090 - MTC LTR MaLR -60 361 5 5 824 2064 156 76 3 chr4 31443078 31443445 -124186675 - ORR1B1 LTR MaLR 0 394 1 5 824 632 292 114 48 chr4 31443614 31443887 -124186233 + B4A SINE B4 2 292 0 5 824 318 50 0 0 chr4 31443887 31443927 -124186193 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 824 12410 59 0 1 chr4 31444084 31445618 -124184502 + L1Md_F2 LINE L1 4054 5586 -297 5 824 8581 44 9 6 chr4 31445618 31446610 -124183510 + L1Md_F2 LINE L1 5587 6581 -1 5 824 343 301 57 19 chr4 31446645 31446750 -124183370 - PB1D10 SINE Alu -7 110 2 5 824 490 300 26 13 chr4 31446840 31446992 -124183128 - ORR1E-int LTR MaLR -1216 154 1 5 824 996 279 115 33 chr4 31446996 31447326 -124182794 - ORR1E LTR MaLR -2 357 1 5 824 2917 166 154 10 chr4 31447351 31447954 -124182166 + RMER6C LTR ERVK 1 690 0 5 824 438 20 0 0 chr4 31447997 31448048 -124182072 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 824 858 291 80 28 chr4 31448062 31448313 -124181807 - B4 SINE B4 -28 264 1 5 824 7776 155 20 27 chr4 31448528 31449804 -124180316 - Lx4A LINE L1 -1 7057 5790 5 824 1279 229 41 126 chr4 31449817 31450231 -124179889 + MTE2a LTR MaLR 1 379 0 6 824 180 0 0 0 chr4 31452361 31452381 -124177739 + (A)n Simple_repeat Simple_repeat 1 20 0 6 824 332 347 82 78 chr4 31454486 31454730 -124175390 + MLT1H LTR MaLR 138 382 -167 6 824 861 262 63 50 chr4 31454728 31455046 -124175074 - MTD LTR MaLR -13 406 85 6 12 39471 4 0 0 chr4 31455046 31460483 -124169637 + L1Md_A LINE L1 149 5586 -297 6 825 9573 6 0 0 chr4 31460483 31461479 -124168641 + L1Md_A LINE L1 5587 6582 0 6 825 568 267 58 69 chr4 31461493 31461682 -124168438 - B3A SINE B2 -11 187 1 6 825 612 0 0 0 chr4 31461982 31462050 -124168070 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 825 468 0 0 0 chr4 31467411 31467463 -124162657 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 825 237 319 22 118 chr4 31467515 31467693 -124162427 - MIRb SINE MIR -7 261 101 6 825 345 333 68 25 chr4 31467725 31467888 -124162232 - MER5A DNA MER1_type -2 187 18 6 825 315 0 0 0 chr4 31468379 31468414 -124161706 + (A)n Simple_repeat Simple_repeat 1 35 0 6 825 231 185 54 36 chr4 31469276 31469332 -124160788 - MamRep434 DNA TcMar -305 121 65 6 825 430 252 0 10 chr4 31469333 31469433 -124160687 - MamRep434 DNA TcMar -326 100 2 6 825 312 27 0 0 chr4 31474212 31474249 -124155871 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 825 216 0 0 0 chr4 31474315 31474339 -124155781 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 825 2023 154 32 99 chr4 31475600 31475697 -124154423 + MTC LTR MaLR 1 98 -323 6 825 1430 169 24 20 chr4 31475697 31475951 -124154169 + Lx5 LINE L1 6796 7050 0 6 825 2023 154 32 99 chr4 31475951 31476286 -124153834 + MTC LTR MaLR 99 404 -17 6 825 234 0 0 0 chr4 31477988 31478014 -124152106 + (A)n Simple_repeat Simple_repeat 1 26 0 6 825 180 399 35 21 chr4 31478071 31478212 -124151908 + MIRb SINE MIR 111 253 -15 6 825 1208 213 63 176 chr4 31479233 31479706 -124150414 - RLTR20C LTR ERVK 0 534 115 6 825 914 94 14 0 chr4 31479708 31479846 -124150274 + (TTTC)n Simple_repeat Simple_repeat 4 143 0 6 825 1028 45 0 15 chr4 31479851 31479985 -124150135 - B1_Mm SINE Alu 0 147 16 6 825 389 167 114 13 chr4 31479985 31480064 -124150056 - RLTR20C LTR ERVK -454 87 1 6 825 322 237 40 40 chr4 31480363 31480464 -124149656 - B3A SINE B2 0 198 98 6 825 2937 150 96 19 chr4 31481517 31482059 -124148061 + RLTR31A_Mm LTR ERVK 1 584 0 6 825 22 56 0 0 chr4 31482252 31482288 -124147832 + AT_rich Low_complexity Low_complexity 1 36 0 6 825 360 244 126 42 chr4 31482702 31482869 -124147251 - RLTR41 LTR ERV1 0 446 266 6 825 255 162 261 14 chr4 31482922 31482991 -124147129 - RLTR41 LTR ERV1 -299 147 62 6 825 310 266 49 21 chr4 31484615 31484757 -124145363 - L1M5 LINE L1 -637 5487 5342 6 825 276 213 16 0 chr4 31485399 31485460 -124144660 - L1MEc LINE L1 -5015 1400 1339 6 825 390 280 9 18 chr4 31485545 31485654 -124144466 + B1F SINE Alu 2 109 -40 6 825 357 24 0 0 chr4 31485750 31485792 -124144328 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 825 855 259 43 88 chr4 31485793 31486098 -124144022 - B4A SINE B4 -1 291 1 6 825 2024 154 23 11 chr4 31486211 31486559 -124143561 + ORR1B1 LTR MaLR 41 392 -2 6 825 322 285 79 70 chr4 31486633 31486848 -124143272 - L1MEc LINE L1 -5389 1011 795 6 825 291 114 0 0 chr4 31488235 31488279 -124141841 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 825 259 339 0 9 chr4 31489343 31489456 -124140664 - L1MEe LINE L1 -1134 5012 4901 6 825 643 303 124 40 chr4 31489472 31489747 -124140373 + Lx8 LINE L1 6772 7069 -404 6 825 1655 193 95 57 chr4 31489928 31489981 -124140139 - ORR1C2 LTR MaLR -1 383 345 6 825 1294 54 0 0 chr4 31489981 31490128 -124139992 - B1_Mus2 SINE Alu 0 147 1 6 825 1655 193 95 57 chr4 31490128 31490285 -124139835 - ORR1C2 LTR MaLR -40 344 177 6 825 741 65 0 0 chr4 31490285 31490393 -124139727 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 825 1655 193 95 57 chr4 31490393 31490550 -124139570 - ORR1C2 LTR MaLR -208 176 1 6 825 555 323 52 72 chr4 31490745 31491346 -124138774 - L1MEe LINE L1 -3773 2393 1805 6 825 240 360 30 0 chr4 31491372 31491536 -124138584 - L1MEe LINE L1 -4439 1727 1559 6 825 714 299 38 28 chr4 31491809 31492022 -124138098 - B4 SINE B4 -1 291 77 6 825 280 311 175 15 chr4 31492305 31492442 -124137678 + RMER15 LTR ERVL 403 561 -14 6 825 1501 241 46 76 chr4 31492631 31493007 -124137113 - MTD LTR MaLR 0 419 47 6 825 1233 62 0 7 chr4 31493007 31493154 -124136966 - B1_Mus2 SINE Alu 0 147 2 6 825 1501 241 46 76 chr4 31493154 31493209 -124136911 - MTD LTR MaLR -373 46 1 6 825 2732 250 54 102 chr4 31493209 31494342 -124135778 - MTD-int LTR MaLR 0 1098 21 6 825 1497 239 70 45 chr4 31494363 31494430 -124135690 - MTD LTR MaLR -3 416 362 6 825 252 86 0 0 chr4 31494430 31494465 -124135655 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 6 825 1116 105 0 0 chr4 31494465 31494608 -124135512 - B1_Mus1 SINE Alu -1 147 5 6 825 1497 239 70 45 chr4 31494608 31494938 -124135182 - MTD LTR MaLR -58 361 9 6 825 429 312 21 101 chr4 31494943 31495132 -124134988 - MLT1F2 LTR MaLR -19 635 404 6 825 1333 295 124 17 chr4 31495327 31495914 -124134206 + LTR68 LTR ERV1 1 650 -90 6 825 612 128 41 41 chr4 31495962 31496084 -124134036 - B2_Mm2 SINE B2 -8 187 66 6 825 9072 8 0 0 chr4 31496382 31498025 -124132095 - L1Md_A LINE L1 0 6582 4940 6 825 582 308 38 16 chr4 31498230 31498415 -124131705 + MTD LTR MaLR 1 189 -230 6 825 9217 1 0 0 chr4 31498433 31499701 -124130419 - L1Md_A LINE L1 0 6582 5315 6 825 1062 65 0 0 chr4 31549930 31550069 -124080051 + (TTC)n Simple_repeat Simple_repeat 3 141 0 1 825 339 167 0 0 chr4 31550072 31550138 -124079982 + CT-rich Low_complexity Low_complexity 3 68 0 2 825 325 189 65 39 chr4 31551717 31551794 -124078326 + HAL1-3A_ME LINE L1 1973 2051 -807 3 825 21 0 0 0 chr4 31552169 31552190 -124077930 + AT_rich Low_complexity Low_complexity 1 21 0 4 825 243 0 0 0 chr4 31553978 31554005 -124076115 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 825 297 0 0 0 chr4 31554087 31554120 -124076000 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 825 4269 30 0 0 chr4 31554135 31554627 -124075493 - L1Md_T LINE L1 0 6582 6091 7 825 1061 30 0 0 chr4 31554627 31554760 -124075360 + L1_Mm LINE L1 5624 5756 -127 8 825 245 432 31 22 chr4 31554839 31555064 -124075056 + L3 LINE CR1 4051 4277 -212 9 825 196 371 94 9 chr4 31555094 31555200 -124074920 - L2b LINE L2 -40 3335 3221 1 825 413 311 59 7 chr4 31556203 31556339 -124073781 + MLT1B LTR MaLR 248 390 0 1 825 336 344 11 0 chr4 31556672 31556762 -124073358 + MLT1I LTR MaLR 295 385 -26 1 825 1133 267 46 62 chr4 31557755 31557971 -124072149 + RMER6A LTR ERVK 110 325 -395 1 825 549 42 0 0 chr4 31557971 31558043 -124072077 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 825 1339 209 59 38 chr4 31558043 31558499 -124071621 + RMER6A LTR ERVK 326 720 0 1 825 2471 241 65 3 chr4 31558674 31559384 -124070736 + L1_Mur3 LINE L1 39 792 -6936 1 825 2242 137 64 29 chr4 31559392 31559843 -124070277 + L1_Mur3 LINE L1 2532 2998 -2882 1 825 936 140 1 0 chr4 31559955 31560127 -124069993 - L1_Mur2 LINE L1 -864 5279 5113 1 825 23 68 0 0 chr4 31560419 31560463 -124069657 + AT_rich Low_complexity Low_complexity 1 44 0 1 825 3053 142 8 8 chr4 31561631 31562127 -124067993 - Lx4A LINE L1 -9 7049 6554 1 825 4276 140 40 27 chr4 31562127 31563106 -124067014 - Lx4A LINE L1 -697 6361 5378 1 825 5789 165 119 112 chr4 31563124 31564451 -124065669 - L1_Mus2 LINE L1 -1 6565 5363 1 825 302 100 50 0 chr4 31564451 31564511 -124065609 - L1Md_F2 LINE L1 0 6582 6520 2 825 5789 169 93 125 chr4 31564511 31564532 -124065588 - L1_Mur2 LINE L1 -515 5362 5362 2 825 1195 55 0 0 chr4 31564532 31564678 -124065442 - B1_Mus1 SINE Alu -2 146 1 2 825 5789 169 93 125 chr4 31564678 31565848 -124064272 - L1_Mus2 LINE L1 -515 5362 4075 1 825 845 258 306 18 chr4 31565848 31566265 -124063855 + RLTR20C LTR ERVK 1 566 -12 2 825 279 0 0 0 chr4 31566265 31566296 -124063824 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 825 15157 121 33 27 chr4 31566300 31568294 -124061826 - L1_Mur2 LINE L1 -1803 4074 2070 2 825 368 20 20 0 chr4 31568294 31568343 -124061777 + (TGG)n Simple_repeat Simple_repeat 1 50 0 2 825 15157 141 56 17 chr4 31568343 31569954 -124060166 - L1_Mur2 LINE L1 -3808 2069 389 2 825 709 119 32 0 chr4 31570274 31570400 -124059720 + GA-rich Low_complexity Low_complexity 2 131 0 2 825 934 152 51 0 chr4 31572407 31572585 -124057535 + Lx2B LINE L1 6808 6994 -6 2 825 309 151 0 0 chr4 31572669 31572722 -124057398 + GA-rich Low_complexity Low_complexity 2 54 0 2 825 491 132 11 0 chr4 31572730 31572821 -124057299 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 825 770 171 35 116 chr4 31573192 31573390 -124056730 + B2_Mm2 SINE B2 4 185 -10 3 825 293 284 36 9 chr4 31574168 31574278 -124055842 + L1M7 LINE L1 2125 2237 -3981 3 825 767 159 222 0 chr4 31575087 31575263 -124054857 + B3 SINE B2 2 216 0 3 825 21 0 0 0 chr4 31575557 31575578 -124054542 + AT_rich Low_complexity Low_complexity 1 21 0 3 825 406 360 37 25 chr4 31575806 31576051 -124054069 + L1MC4 LINE L1 6793 7040 -1002 3 825 396 71 0 0 chr4 31577972 31578028 -124052092 + (TCTG)n Simple_repeat Simple_repeat 4 59 0 3 825 3877 223 98 35 chr4 31578074 31578277 -124051843 - Lx7 LINE L1 -13 7683 7328 3 825 387 125 0 0 chr4 31578277 31578349 -124051771 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 825 3877 222 101 37 chr4 31578349 31579280 -124050840 - Lx7 LINE L1 -247 7449 6498 3 825 198 0 0 0 chr4 31580216 31580238 -124049882 + (A)n Simple_repeat Simple_repeat 1 22 0 3 825 3005 119 18 0 chr4 31582446 31582952 -124047168 - L1_Mur1 LINE L1 -2785 3101 2587 4 825 6585 39 0 0 chr4 31582967 31583747 -124046373 - L1Md_T LINE L1 0 6582 5803 4 825 242 247 143 0 chr4 31583763 31583840 -124046280 + B2_Mm2 SINE B2 5 92 -103 4 825 1170 133 102 0 chr4 31583822 31584018 -124046102 + URR1B DNA MER1_type 10 225 0 4 825 247 49 49 0 chr4 31584102 31584143 -124045977 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 825 411 134 0 0 chr4 31584143 31584225 -124045895 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 825 23 0 0 0 chr4 31584630 31584653 -124045467 + AT_rich Low_complexity Low_complexity 1 23 0 4 825 326 331 89 16 chr4 31584684 31584874 -124045246 + L1M5 LINE L1 4557 4760 -1386 4 825 306 265 24 12 chr4 31585217 31585301 -124044819 - B3 SINE B2 0 216 132 4 825 1977 110 33 21 chr4 31585698 31586054 -124044066 - Lx4B LINE L1 -1402 5656 5288 4 825 5134 221 25 4 chr4 31586054 31587204 -124042916 + Lx5 LINE L1 5877 7050 0 5 825 567 208 25 38 chr4 31588040 31588200 -124041920 + Lx6 LINE L1 6067 6224 -1236 5 103 2127 262 168 23 chr4 31588218 31588905 -124041215 + Lx6 LINE L1 6518 7310 -150 5 826 339 25 0 0 chr4 31588905 31588945 -124041175 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 826 2127 262 168 23 chr4 31588945 31589060 -124041060 + Lx6 LINE L1 7311 7432 -28 5 826 7617 32 17 0 chr4 31589060 31589961 -124040159 + L1Md_F2 LINE L1 5667 6582 0 5 826 2127 262 168 23 chr4 31589961 31589973 -124040147 + Lx6 LINE L1 7433 7449 -11 5 826 474 278 222 34 chr4 31591697 31592018 -124038102 + MLT1C LTR MaLR 1 382 -85 5 826 22 70 0 0 chr4 31592464 31592507 -124037613 + AT_rich Low_complexity Low_complexity 1 43 0 5 826 414 0 0 0 chr4 31595218 31595264 -124034856 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 826 378 61 0 0 chr4 31595264 31595312 -124034808 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 5 826 980 289 144 19 chr4 31595499 31595859 -124034261 - MTD LTR MaLR -14 405 1 5 826 710 239 33 5 chr4 31597588 31597802 -124032318 + Lx8 LINE L1 6968 7187 -286 5 826 871 301 43 40 chr4 31597811 31598157 -124031963 + RMER15 LTR ERVL 217 563 -12 6 826 192 40 0 0 chr4 31598243 31598268 -124031852 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 826 1047 88 0 0 chr4 31598268 31598404 -124031716 - B1_Mus1 SINE Alu -12 136 1 6 826 457 328 42 21 chr4 31599339 31599669 -124030451 + L1M2 LINE L1 5414 5750 -550 6 826 378 0 0 0 chr4 31599798 31599840 -124030280 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 826 2446 86 0 0 chr4 31599975 31600312 -124029808 - L1_Mm LINE L1 -77 5806 5470 6 826 1563 67 5 0 chr4 31600312 31600520 -124029600 + L1_Mus1 LINE L1 6359 6567 0 6 826 235 256 96 81 chr4 31601945 31602081 -124028039 - MLT1C LTR MaLR -245 222 85 6 826 1698 230 55 20 chr4 31602103 31602162 -124027958 - MTC LTR MaLR 0 421 362 6 826 1945 132 6 63 chr4 31602162 31602511 -124027609 - ORR1A4 LTR MaLR 0 329 1 6 826 1698 230 55 20 chr4 31602511 31602854 -124027266 - MTC LTR MaLR -60 361 5 6 826 2064 156 76 3 chr4 31602902 31603269 -124026851 - ORR1B1 LTR MaLR 0 394 1 7 826 539 292 114 48 chr4 31603438 31603711 -124026409 + B4A SINE B4 2 292 0 7 826 318 50 0 0 chr4 31603711 31603751 -124026369 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 826 11563 59 0 1 chr4 31603908 31605442 -124024678 + L1Md_F2 LINE L1 4054 5586 -297 7 826 8048 44 9 6 chr4 31605442 31606434 -124023686 + L1Md_F2 LINE L1 5587 6581 -1 7 826 307 301 57 19 chr4 31606469 31606574 -124023546 - PB1D10 SINE Alu -7 110 2 7 826 498 305 20 7 chr4 31606664 31606816 -124023304 - ORR1E-int LTR MaLR -1216 154 1 7 826 872 279 115 33 chr4 31606820 31607150 -124022970 - ORR1E LTR MaLR -2 357 1 7 826 2634 166 154 10 chr4 31607175 31607778 -124022342 + RMER6C LTR ERVK 1 690 0 7 826 438 20 0 0 chr4 31607821 31607872 -124022248 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 826 862 291 80 28 chr4 31607886 31608137 -124021983 - B4 SINE B4 -28 264 1 7 826 7221 155 20 27 chr4 31608352 31609628 -124020492 - Lx4A LINE L1 -1 7057 5790 7 826 1126 229 41 126 chr4 31609641 31610055 -124020065 + MTE2a LTR MaLR 1 379 0 8 826 180 0 0 0 chr4 31612185 31612205 -124017915 + (A)n Simple_repeat Simple_repeat 1 20 0 8 826 332 347 82 78 chr4 31614310 31614554 -124015566 + MLT1F2 LTR MaLR 138 382 -167 8 826 861 262 63 50 chr4 31614552 31614870 -124015250 - MTD LTR MaLR -13 406 85 8 826 39471 4 0 0 chr4 31614870 31620307 -124009813 + L1Md_A LINE L1 149 5586 -297 8 826 9642 2 0 0 chr4 31620307 31621303 -124008817 + L1Md_A LINE L1 5587 6582 0 8 826 582 308 38 16 chr4 31621321 31621506 -124008614 - MTD LTR MaLR -230 189 1 8 826 5842 9 0 0 chr4 31621711 31622358 -124007762 + L1Md_A LINE L1 4940 5586 -297 8 826 9496 10 0 0 chr4 31622358 31623354 -124006766 + L1Md_A LINE L1 5587 6582 0 8 826 612 128 41 41 chr4 31623652 31623774 -124006346 + B2_Mm2 SINE B2 66 187 -8 8 826 1333 295 124 17 chr4 31623822 31624409 -124005711 - LTR68 LTR ERV1 -90 650 1 8 826 429 312 21 101 chr4 31624604 31624793 -124005327 + MLT1F2 LTR MaLR 404 635 -19 8 826 1497 239 70 45 chr4 31624798 31625128 -124004992 + MTD LTR MaLR 8 361 -58 8 826 1116 105 0 0 chr4 31625128 31625271 -124004849 + B1_Mus1 SINE Alu 5 147 -1 9 826 252 86 0 0 chr4 31625271 31625306 -124004814 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 9 826 1497 239 70 45 chr4 31625306 31625373 -124004747 + MTD LTR MaLR 362 415 -4 8 826 2732 250 54 102 chr4 31625394 31626527 -124003593 + MTD-int LTR MaLR 21 1098 0 8 826 1501 241 46 76 chr4 31626527 31626582 -124003538 + MTD LTR MaLR 1 46 -373 8 826 1233 62 0 7 chr4 31626582 31626729 -124003391 + B1_Mus2 SINE Alu 2 147 0 9 826 1501 241 46 76 chr4 31626729 31627105 -124003015 + MTD LTR MaLR 47 419 0 8 826 280 311 175 15 chr4 31627294 31627431 -124002689 - RMER15 LTR ERVL -14 561 403 9 826 714 299 38 28 chr4 31627714 31627927 -124002193 + B4 SINE B4 77 291 -1 9 826 240 360 30 0 chr4 31628200 31628364 -124001756 + L1MEe LINE L1 1559 1727 -4439 9 826 555 323 52 72 chr4 31628390 31628991 -124001129 + L1MEe LINE L1 1805 2393 -3773 9 826 1655 193 95 57 chr4 31629186 31629343 -124000777 + ORR1C2 LTR MaLR 1 176 -208 9 826 741 65 0 0 chr4 31629343 31629451 -124000669 + (TC)n Simple_repeat Simple_repeat 1 108 0 9 826 1655 193 95 57 chr4 31629451 31629608 -124000512 + ORR1C2 LTR MaLR 177 344 -40 9 826 1294 54 0 0 chr4 31629608 31629755 -124000365 + B1_Mus2 SINE Alu 1 147 0 9 826 1655 193 95 57 chr4 31629755 31629808 -124000312 + ORR1C2 LTR MaLR 345 383 -1 9 826 643 303 124 40 chr4 31629989 31630264 -123999856 - Lx8 LINE L1 -404 7069 6772 9 826 259 339 0 9 chr4 31630280 31630393 -123999727 + L1MEe LINE L1 4901 5012 -1134 9 826 291 114 0 0 chr4 31631457 31631501 -123998619 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 826 322 285 79 70 chr4 31632888 31633103 -123997017 + L1MEc LINE L1 795 1011 -5389 1 826 2024 154 23 11 chr4 31633177 31633525 -123996595 - ORR1B1 LTR MaLR -2 392 41 1 826 855 259 43 88 chr4 31633638 31633943 -123996177 + B4A SINE B4 1 291 -1 1 826 357 24 0 0 chr4 31633944 31633986 -123996134 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 826 390 280 9 18 chr4 31634082 31634191 -123995929 - B1F SINE Alu -40 109 2 1 826 276 213 16 0 chr4 31634276 31634337 -123995783 + L1MEc LINE L1 1339 1400 -5015 1 826 310 266 49 21 chr4 31634979 31635121 -123994999 + L1M5 LINE L1 5342 5487 -637 1 826 255 162 261 14 chr4 31636745 31636814 -123993306 + RLTR41 LTR ERV1 62 147 -299 1 826 360 244 126 42 chr4 31636867 31637034 -123993086 + RLTR41 LTR ERV1 266 446 0 1 826 22 56 0 0 chr4 31637448 31637484 -123992636 + AT_rich Low_complexity Low_complexity 1 36 0 1 826 2937 150 96 19 chr4 31637677 31638219 -123991901 - RLTR31A_Mm LTR ERVK 0 584 1 1 826 322 237 40 40 chr4 31639272 31639373 -123990747 + B3A SINE B2 98 198 0 1 826 389 167 114 13 chr4 31639672 31639751 -123990369 + RLTR20C LTR ERVK 1 87 -454 1 826 1028 45 0 15 chr4 31639751 31639885 -123990235 + B1_Mm SINE Alu 16 147 0 1 826 914 94 14 0 chr4 31639890 31640028 -123990092 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 1 826 1208 213 63 176 chr4 31640030 31640503 -123989617 + RLTR20C LTR ERVK 115 534 0 1 826 180 399 35 21 chr4 31641524 31641665 -123988455 - MIRb SINE MIR -15 253 111 1 826 234 0 0 0 chr4 31641722 31641748 -123988372 + (T)n Simple_repeat Simple_repeat 1 26 0 1 826 2023 154 32 99 chr4 31643450 31643785 -123986335 - MTC LTR MaLR -17 404 99 1 826 1430 169 24 20 chr4 31643785 31644039 -123986081 - Lx5 LINE L1 0 7050 6796 1 826 2023 154 32 99 chr4 31644039 31644136 -123985984 - MTC LTR MaLR -323 98 1 1 826 216 0 0 0 chr4 31645397 31645421 -123984699 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 826 312 27 0 0 chr4 31645487 31645524 -123984596 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 826 430 252 0 10 chr4 31650303 31650403 -123979717 + MamRep434 DNA TcMar 2 100 -326 1 826 231 185 54 36 chr4 31650404 31650460 -123979660 + MamRep434 DNA TcMar 65 121 -305 1 826 324 0 0 0 chr4 31651322 31651358 -123978762 + (T)n Simple_repeat Simple_repeat 1 36 0 1 826 345 333 68 25 chr4 31651849 31652012 -123978108 + MER5A DNA MER1_type 18 187 -2 1 826 239 328 29 86 chr4 31652044 31652184 -123977936 + MIRb SINE MIR 101 232 -36 1 826 468 0 0 0 chr4 31652274 31652326 -123977794 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 826 612 0 0 0 chr4 31657687 31657755 -123972365 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 826 568 267 58 69 chr4 31658055 31658244 -123971876 + B3A SINE B2 1 187 -11 1 826 9217 8 1 0 chr4 31658258 31659640 -123970480 - L1Md_A LINE L1 0 6582 5229 1 826 268 330 0 78 chr4 31660744 31660859 -123969261 + PB1D7 SINE Alu 1 106 -14 1 826 302 67 0 22 chr4 31660859 31660905 -123969215 + (GGA)n Simple_repeat Simple_repeat 1 45 0 1 826 297 0 0 0 chr4 31661012 31661045 -123969075 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 826 268 313 0 0 chr4 31662389 31662456 -123967664 + C-rich Low_complexity Low_complexity 6 72 0 1 826 181 327 19 65 chr4 31663367 31663475 -123966645 + L3 LINE CR1 762 864 -3625 1 826 525 44 0 0 chr4 31664432 31664500 -123965620 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 826 2457 109 64 0 chr4 31665057 31665434 -123964686 - Lx LINE L1 0 6654 6254 1 826 343 254 8 33 chr4 31667947 31668069 -123962051 + L1ME3B LINE L1 5937 6055 -185 1 826 639 78 0 0 chr4 31669687 31669777 -123960343 + (TGG)n Simple_repeat Simple_repeat 1 90 0 1 826 2176 287 94 53 chr4 31671243 31672245 -123957875 + Lx9 LINE L1 6526 7568 -76 1 826 24 0 0 0 chr4 31672295 31672319 -123957801 + AT_rich Low_complexity Low_complexity 1 24 0 1 826 416 263 52 47 chr4 31674502 31674717 -123955403 - MER45C DNA Tip100 -679 274 51 1 826 1860 195 13 5 chr4 31674937 31675319 -123954801 - ORR1B1 LTR MaLR -9 385 1 1 826 6430 190 53 5 chr4 31675327 31676747 -123953373 - ORR1B1-int LTR MaLR -8 1501 13 1 826 1888 180 65 5 chr4 31676750 31677119 -123953001 - ORR1B1 LTR MaLR -3 391 1 1 826 456 67 0 0 chr4 31677176 31677236 -123952884 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 826 790 328 113 12 chr4 31677621 31677967 -123952153 - MER70B LTR ERVL -179 399 19 1 826 1018 293 29 17 chr4 31677969 31678320 -123951800 + Lx7 LINE L1 6948 7302 -394 1 826 265 250 0 0 chr4 31679116 31679172 -123950948 - ID_B1 SINE B4 -19 205 150 1 826 1859 170 40 3 chr4 31679196 31679544 -123950576 - ORR1C1 LTR MaLR -17 361 1 1 826 360 0 0 0 chr4 31679805 31679845 -123950275 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 826 302 304 40 26 chr4 31680932 31681084 -123949036 - Lx7 LINE L1 -1539 6157 6004 1 826 753 226 139 27 chr4 31681163 31681386 -123948734 + Lx7 LINE L1 6173 6420 -1276 1 826 1321 177 18 0 chr4 31681387 31681613 -123948507 + Lx7 LINE L1 6719 6948 -748 1 826 3427 151 138 72 chr4 31681613 31682448 -123947672 + RMER19B LTR ERVK 1 890 -12 1 826 1842 231 5 30 chr4 31682458 31682886 -123947234 + Lx7 LINE L1 6940 7356 -340 1 826 531 0 0 0 chr4 31682924 31682983 -123947137 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 826 582 15 0 0 chr4 31683117 31683184 -123946936 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 826 288 0 0 0 chr4 31683184 31683215 -123946905 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 826 382 259 78 71 chr4 31683314 31683469 -123946651 - B3A SINE B2 -4 191 36 1 826 496 287 31 0 chr4 31683488 31683617 -123946503 - B1F SINE Alu -9 140 8 1 826 225 295 33 0 chr4 31683565 31683626 -123946494 - B4A SINE B4 -148 144 82 1 826 45 45 0 0 chr4 31684005 31684071 -123946049 + AT_rich Low_complexity Low_complexity 1 66 0 1 826 1720 171 24 12 chr4 31684294 31684625 -123945495 + ORR1C1 LTR MaLR 6 340 -38 1 826 6892 127 17 16 chr4 31684625 31685993 -123944127 + Lx LINE L1 5277 6653 -1 1 826 341 111 19 0 chr4 31686035 31686089 -123944031 + ORR1C1 LTR MaLR 324 378 0 1 826 1302 69 3 0 chr4 31686120 31686486 -123943634 + (GGA)n Simple_repeat Simple_repeat 1 366 0 1 826 279 0 0 0 chr4 31687040 31687071 -123943049 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 826 716 33 11 0 chr4 31688055 31688146 -123941974 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 826 243 0 0 0 chr4 31689433 31689460 -123940660 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 826 645 333 19 55 chr4 31690086 31690343 -123939777 + B4A SINE B4 7 254 -38 1 826 912 204 92 0 chr4 31691664 31691870 -123938250 - URR1B DNA MER1_type 0 225 1 1 826 303 319 117 85 chr4 31692274 31692536 -123937584 - MLT1D LTR MaLR 0 505 239 1 826 392 250 147 8 chr4 31692536 31692665 -123937455 - B1F2 SINE Alu -2 147 1 1 826 303 319 117 85 chr4 31692665 31692872 -123937248 - MLT1D LTR MaLR -267 238 21 1 826 1417 209 82 58 chr4 31694997 31695362 -123934758 + ORR1D1 LTR MaLR 1 374 0 1 826 384 292 98 24 chr4 31697590 31697713 -123932407 - RSINE1 SINE B4 -31 134 3 1 826 573 304 75 47 chr4 31697758 31698013 -123932107 + B4A SINE B4 11 272 -20 1 826 235 283 0 16 chr4 31698043 31698104 -123932016 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 826 182 330 109 8 chr4 31698323 31698442 -123931678 + MIRc SINE MIR 118 248 -20 1 826 198 0 0 0 chr4 31701124 31701146 -123928974 + (A)n Simple_repeat Simple_repeat 1 22 0 1 826 806 214 72 15 chr4 31701660 31701855 -123928265 - B3 SINE B2 -10 206 1 1 826 611 161 0 13 chr4 31701867 31702024 -123928096 + (TAGA)n Simple_repeat Simple_repeat 4 158 0 1 826 453 269 36 36 chr4 31702505 31702644 -123927476 - Lx9 LINE L1 -451 7193 7055 1 826 543 90 0 0 chr4 31702761 31702839 -123927281 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1 826 207 0 0 0 chr4 31702975 31702998 -123927122 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1 826 413 92 33 33 chr4 31702998 31703088 -123927032 + G-rich Low_complexity Low_complexity 5 94 0 1 826 1116 41 0 0 chr4 31703088 31703234 -123926886 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 1 826 860 320 65 11 chr4 31703358 31703728 -123926392 + MLT1B LTR MaLR 1 390 0 1 826 325 306 8 31 chr4 31703776 31703904 -123926216 + MIR SINE MIR 87 211 -51 1 826 255 152 62 12 chr4 31704264 31704344 -123925776 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 826 543 90 0 0 chr4 31704346 31704424 -123925696 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1 826 279 0 0 0 chr4 31704515 31704546 -123925574 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 826 225 0 0 0 chr4 31706533 31706558 -123923562 + (A)n Simple_repeat Simple_repeat 1 25 0 1 826 277 326 0 0 chr4 31707804 31707893 -123922227 - Tigger5 DNA MER2_type -2179 227 139 1 826 334 205 30 0 chr4 31708021 31708096 -123922024 + ID4_ SINE ID 16 92 -60 1 826 258 214 13 91 chr4 31708496 31708573 -123921547 - ORR1C2 LTR MaLR -14 405 335 1 826 1615 177 83 17 chr4 31708582 31708932 -123921188 - ORR1C2 LTR MaLR -11 373 1 1 826 811 286 70 14 chr4 31708935 31709222 -123920898 - MTD LTR MaLR -115 304 2 1 826 1190 36 0 0 chr4 31710041 31710179 -123919941 + B1_Mm SINE Alu 1 138 -9 1 826 180 0 0 0 chr4 31710223 31710243 -123919877 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 826 260 289 10 10 chr4 31711658 31711756 -123918364 - B4A SINE B4 -194 98 1 1 826 203 335 62 50 chr4 31712472 31712714 -123917406 - L2c LINE L2 -233 3154 2910 1 826 249 163 0 0 chr4 31713302 31713351 -123916769 + CT-rich Low_complexity Low_complexity 4 52 0 1 826 288 308 77 133 chr4 31715391 31715603 -123914517 - ORR1E LTR MaLR -35 324 116 1 826 1656 206 38 14 chr4 31715603 31715968 -123914152 - ORR1D1 LTR MaLR 0 374 1 1 826 288 308 77 133 chr4 31715968 31716055 -123914065 - ORR1E LTR MaLR -244 115 42 1 826 230 211 69 17 chr4 31716160 31716218 -123913902 + ID4 SINE ID 19 79 -4 1 826 259 294 0 14 chr4 31716448 31716517 -123913603 - Charlie4z DNA MER1_type -5 162 95 1 826 180 176 0 0 chr4 31717889 31717923 -123912197 + GA-rich Low_complexity Low_complexity 3 36 0 1 826 318 335 48 86 chr4 31718634 31719052 -123911068 - L2 LINE L2 -339 3080 2679 2 103 2175 118 18 6 chr4 31719351 31719684 -123910436 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 827 5663 72 33 12 chr4 31719686 31720441 -123909679 - IAPEz-int LTR ERVK -2 6479 5709 2 827 3154 22 0 0 chr4 31720432 31720789 -123909331 - IAPEz-int LTR ERVK -2124 4357 4001 2 827 11204 100 95 23 chr4 31720787 31723367 -123906753 - IAPEz-int LTR ERVK -3707 2774 8 2 827 2175 118 18 6 chr4 31723367 31723700 -123906420 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 827 361 372 26 20 chr4 31724363 31724667 -123905453 + Tigger15a DNA TcMar 17 322 -393 2 827 528 268 77 63 chr4 31727487 31727694 -123902426 - Lx8 LINE L1 -146 7327 7118 2 827 383 329 6 32 chr4 31728093 31728250 -123901870 - MER63A DNA AcHobo -49 161 9 2 827 24 0 0 0 chr4 31728946 31728970 -123901150 + AT_rich Low_complexity Low_complexity 1 24 0 2 827 513 0 0 0 chr4 31729471 31729528 -123900592 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 827 185 61 0 83 chr4 31730653 31730689 -123899431 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 2 827 1003 281 26 54 chr4 31730719 31731069 -123899051 + ORR1D2 LTR MaLR 31 370 0 2 827 1001 224 62 175 chr4 31731216 31731638 -123898482 + ORR1D1 LTR MaLR 1 374 0 2 827 4821 227 39 71 chr4 31731638 31733049 -123897071 + ORR1D1-int LTR MaLR 1 1366 -4 2 827 1683 204 24 29 chr4 31733053 31733427 -123896693 + ORR1D1 LTR MaLR 3 374 0 2 827 236 284 126 30 chr4 31735597 31735764 -123894356 + MER5A DNA MER1_type 7 189 0 2 827 243 0 0 0 chr4 31736130 31736157 -123893963 + (T)n Simple_repeat Simple_repeat 1 27 0 2 827 222 171 14 28 chr4 31736285 31736357 -123893763 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 827 22 56 0 0 chr4 31736582 31736618 -123893502 + AT_rich Low_complexity Low_complexity 1 36 0 2 827 271 272 133 64 chr4 31737053 31737226 -123892894 + Helitron3Na_Mam RC Helitron 183 367 -119 2 827 239 276 56 19 chr4 31737825 31737932 -123892188 + MIR SINE MIR 108 218 -44 2 827 3728 250 57 18 chr4 31738162 31739122 -123890998 + Lx9 LINE L1 6306 7303 -341 2 827 538 193 68 6 chr4 31739124 31739286 -123890834 + Lx9 LINE L1 7453 7624 -20 2 827 565 307 0 0 chr4 31740300 31740440 -123889680 - RSINE1 SINE B4 -22 143 4 2 827 471 130 0 0 chr4 31741657 31741757 -123888363 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 827 210 224 0 0 chr4 31743332 31743349 -123886771 + A-rich Low_complexity Low_complexity 1 17 0 2 827 1100 88 0 0 chr4 31743349 31743496 -123886624 + B1_Mus2 SINE Alu 1 147 0 2 827 210 224 0 0 chr4 31743496 31743536 -123886584 + A-rich Low_complexity Low_complexity 18 57 0 2 827 258 319 22 0 chr4 31744398 31744489 -123885631 + B4A SINE B4 1 93 -199 2 827 185 59 0 56 chr4 31744544 31744580 -123885540 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 827 818 179 18 41 chr4 31744966 31745159 -123884961 + B3 SINE B2 1 190 -5 2 827 1215 240 55 46 chr4 31745863 31746230 -123883890 + ORR1D1 LTR MaLR 1 370 -4 2 827 1867 271 118 37 chr4 31746542 31747244 -123882876 + Lx9 LINE L1 6859 7617 -27 2 827 252 226 0 0 chr4 31747341 31747403 -123882717 + (TTA)n Simple_repeat Simple_repeat 2 63 0 2 827 299 296 55 9 chr4 31747642 31747751 -123882369 - B3 SINE B2 -1 215 102 2 827 722 120 17 8 chr4 31749442 31749560 -123880560 - RLTR41 LTR ERV1 -327 119 1 2 827 355 284 147 0 chr4 31749710 31749805 -123880315 - B1F1 SINE Alu -38 111 3 2 827 341 256 13 0 chr4 31749845 31749923 -123880197 + Ricksha_c DNA MuDR 365 443 -1605 2 827 411 250 93 0 chr4 31749988 31750128 -123879992 + MTEa LTR MaLR 227 379 0 2 827 2011 129 32 59 chr4 31751130 31751468 -123878652 - ORR1A4 LTR MaLR 0 329 1 2 827 7888 146 127 125 chr4 31751468 31753426 -123876694 - ORR1A4-int LTR MaLR 0 1963 1 2 827 1900 158 21 21 chr4 31753426 31753755 -123876365 - ORR1A4 LTR MaLR 0 329 1 2 827 1478 291 90 13 chr4 31753883 31754405 -123875715 + Lx7 LINE L1 6627 7188 -508 2 827 1736 202 95 34 chr4 31754423 31754960 -123875160 + Lx9 LINE L1 7075 7644 0 2 827 475 252 39 8 chr4 31754970 31755098 -123875022 + Lx7 LINE L1 7176 7307 -389 2 827 297 0 0 0 chr4 31755103 31755136 -123874984 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 827 23 33 0 0 chr4 31755261 31755291 -123874829 + AT_rich Low_complexity Low_complexity 1 30 0 2 827 32 0 0 0 chr4 31755559 31755591 -123874529 + AT_rich Low_complexity Low_complexity 1 32 0 2 827 843 332 44 25 chr4 31756098 31756534 -123873586 + MER44B DNA MER2_type 22 465 -85 2 827 399 299 127 27 chr4 31756587 31756879 -123873241 + L1MEe LINE L1 1804 2124 -4042 2 827 247 256 11 11 chr4 31757410 31757501 -123872619 + L1MEe LINE L1 2740 2830 -3316 2 827 720 260 56 24 chr4 31757475 31757727 -123872393 + L1ME1 LINE L1 5918 6177 -2 2 827 270 0 0 0 chr4 31757896 31757926 -123872194 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 827 389 304 165 12 chr4 31757940 31758279 -123871841 + L1MEe LINE L1 3128 3518 -2628 2 827 1183 259 77 65 chr4 31758637 31759054 -123871066 - MLT2B1 LTR ERVL -96 424 3 2 827 440 316 58 0 chr4 31759798 31759969 -123870151 + MTD LTR MaLR 19 199 -220 2 827 382 240 16 16 chr4 31759969 31760092 -123870028 + Lx5 LINE L1 6928 7050 0 2 827 638 241 90 6 chr4 31760136 31760303 -123869817 + MTD LTR MaLR 224 404 -15 2 827 240 111 0 0 chr4 31760457 31760493 -123869627 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 827 477 0 0 0 chr4 31761021 31761074 -123869046 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 827 323 317 8 31 chr4 31761356 31761483 -123868637 - MLT1A1 LTR MaLR -279 129 6 2 827 2961 56 1 0 chr4 31761646 31762015 -123868105 + L1_Mus1 LINE L1 5777 6151 -416 2 827 15510 45 0 1 chr4 31762025 31764609 -123865511 - L1Md_F2 LINE L1 -15 6567 3987 2 827 3144 72 0 39 chr4 31764609 31765040 -123865080 + L1_Mus1 LINE L1 6154 6567 0 2 827 25 31 0 0 chr4 31765040 31765072 -123865048 + AT_rich Low_complexity Low_complexity 1 32 0 2 827 183 184 0 0 chr4 31765072 31765110 -123865010 + A-rich Low_complexity Low_complexity 1 38 0 2 827 411 98 0 0 chr4 31767323 31767384 -123862736 + (CGTG)n Simple_repeat Simple_repeat 2 62 0 2 827 2074 136 31 17 chr4 31769646 31769997 -123860123 - Lx4A LINE L1 -651 6407 6052 2 827 3928 144 10 3 chr4 31769997 31770608 -123859512 + Lx4A LINE L1 6443 7057 -1 2 827 613 227 86 17 chr4 31770645 31770820 -123859300 + B3A SINE B2 7 193 -5 2 827 195 220 0 39 chr4 31771200 31771252 -123858868 + MIRc SINE MIR 128 177 -91 2 827 4923 122 39 27 chr4 31772253 31773132 -123856988 - RMER17D LTR ERVK 0 889 1 2 827 1703 141 152 50 chr4 31773295 31773638 -123856482 + ORR1C1 LTR MaLR 1 378 0 2 827 2194 147 16 8 chr4 31774060 31774443 -123855677 + ORR1B1 LTR MaLR 1 386 -8 2 827 343 268 34 40 chr4 31774459 31774607 -123855513 + L1MB4 LINE L1 5187 5333 -807 2 827 294 245 81 67 chr4 31774832 31774981 -123855139 + L1MB4 LINE L1 5667 5817 -363 2 827 230 257 160 9 chr4 31775048 31775154 -123854966 + L1MB4 LINE L1 5998 6119 -61 2 827 613 302 6 25 chr4 31775340 31775503 -123854617 + RSINE1 SINE B4 6 165 0 2 827 409 271 126 44 chr4 31775676 31776001 -123854119 + L1ME3B LINE L1 5579 5929 -311 2 827 208 370 84 15 chr4 31778558 31778761 -123851359 - MIR SINE MIR -26 236 20 2 827 793 292 129 23 chr4 31778912 31779009 -123851111 - B4A SINE B4 0 292 200 2 827 1805 160 68 10 chr4 31779009 31779318 -123850802 - ORR1A2 LTR MaLR 0 327 1 2 827 793 292 129 23 chr4 31779318 31779483 -123850637 - B4A SINE B4 -93 199 2 2 827 304 358 18 74 chr4 31779669 31779886 -123850234 + B4A SINE B4 2 206 -86 2 827 480 160 0 0 chr4 31779913 31780032 -123850088 + GA-rich Low_complexity Low_complexity 2 120 0 2 827 243 306 0 40 chr4 31780153 31780208 -123849912 + B4 SINE B4 215 268 -24 2 827 927 51 0 0 chr4 31780208 31780325 -123849795 + (TC)n Simple_repeat Simple_repeat 1 117 0 2 827 243 306 0 40 chr4 31780325 31780344 -123849776 + B4 SINE B4 269 286 -6 2 827 401 189 11 0 chr4 31780362 31780457 -123849663 + GA-rich Low_complexity Low_complexity 5 100 0 2 827 1257 214 47 109 chr4 31781410 31781814 -123848306 - MTE2a LTR MaLR 0 379 1 2 827 4317 75 45 0 chr4 31782052 31782611 -123847509 - MT2B2 LTR ERVL 0 584 1 2 827 551 189 8 0 chr4 31782922 31783044 -123847076 + CT-rich Low_complexity Low_complexity 2 124 0 2 827 3304 46 8 0 chr4 31783052 31783445 -123846675 - MTA_Mm LTR MaLR 0 396 1 2 827 442 249 43 22 chr4 31783920 31784128 -123845992 + L1MA5 LINE L1 5468 5682 -630 2 827 1246 62 11 0 chr4 31784223 31784400 -123845720 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 827 276 91 0 0 chr4 31784400 31784444 -123845676 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 827 414 295 118 52 chr4 31784461 31784637 -123845483 + MTEa LTR MaLR 76 268 -111 2 827 1056 39 0 0 chr4 31784637 31784766 -123845354 + (CA)n Simple_repeat Simple_repeat 1 129 0 2 827 414 295 118 52 chr4 31784766 31784861 -123845259 + MTEa LTR MaLR 269 365 -14 2 827 337 289 50 19 chr4 31784870 31785048 -123845072 + L1MA5 LINE L1 5784 5964 -333 2 827 234 178 0 64 chr4 31785149 31785227 -123844893 + C-rich Low_complexity Low_complexity 2 74 0 2 827 577 217 56 28 chr4 31785228 31785370 -123844750 - B1_Mur1 SINE Alu 0 149 4 2 827 5150 123 70 16 chr4 31787889 31788713 -123841407 - Lx4A LINE L1 -3 7055 6187 2 827 765 337 51 3 chr4 31789283 31789655 -123840465 + MLT1B LTR MaLR 1 390 0 2 827 3444 215 32 24 chr4 31791743 31792483 -123837637 - RLTR42-int LTR ERVK -2656 2866 2121 2 827 822 191 16 80 chr4 31792530 31792780 -123837340 - RLTR42-int LTR ERVK -3395 2127 1894 2 827 633 215 107 53 chr4 31793161 31793186 -123836934 - B3A SINE B2 0 198 181 2 827 197 0 0 132 chr4 31793186 31793224 -123836896 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 827 1125 93 0 0 chr4 31793224 31793385 -123836735 - B2_Mm2 SINE B2 -33 162 2 2 827 1893 166 57 57 chr4 31793484 31793926 -123836194 - RMER10A LTR ERVL 0 442 1 2 827 342 214 0 14 chr4 31793977 31794048 -123836072 - RLTR42-int LTR ERVK -3915 1607 1538 2 827 432 0 0 0 chr4 31794127 31794175 -123835945 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 827 1723 134 85 77 chr4 31797591 31797955 -123832165 - ORR1B2 LTR MaLR 0 367 1 2 827 477 0 0 0 chr4 31802025 31802078 -123828042 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 827 245 236 31 41 chr4 31802140 31802237 -123827883 + MTEb LTR MaLR 278 373 -6 2 827 27 0 0 0 chr4 31803706 31803733 -123826387 + AT_rich Low_complexity Low_complexity 1 27 0 2 827 182 276 76 67 chr4 31804763 31804868 -123825252 - MIR SINE MIR -40 222 117 2 827 925 294 91 14 chr4 31805173 31805469 -123824651 + Lx8 LINE L1 6377 6695 -778 2 827 1578 142 95 7 chr4 31805467 31805750 -123824370 + Lx LINE L1 6320 6627 -27 2 827 7425 78 12 1 chr4 31805758 31806726 -123823394 + L1_Mus2 LINE L1 5587 6565 -1 2 827 206 232 0 0 chr4 31806744 31806800 -123823320 + A-rich Low_complexity Low_complexity 1 56 0 2 827 697 268 111 5 chr4 31806800 31806999 -123823121 + Lx8 LINE L1 6694 6913 -560 2 827 586 274 22 149 chr4 31807055 31807411 -123822709 + Lx8 LINE L1 7155 7465 -8 2 827 22 56 0 0 chr4 31809980 31810016 -123820104 + AT_rich Low_complexity Low_complexity 1 36 0 2 827 199 307 93 34 chr4 31810170 31810288 -123819832 - MIRc SINE MIR -25 243 119 2 827 617 291 47 84 chr4 31812191 31812487 -123817633 + MLT2B2 LTR ERVL 2 286 -229 3 827 315 172 0 17 chr4 31812492 31812551 -123817569 - MTC LTR MaLR -1 418 361 3 827 1563 115 40 0 chr4 31812551 31812803 -123817317 + ORR1A4 LTR MaLR 1 262 -67 3 827 1887 146 60 20 chr4 31812802 31813152 -123816968 - MTC LTR MaLR -57 364 1 3 827 922 236 49 63 chr4 31813662 31814102 -123816018 - BGLII_B LTR ERVK -255 437 4 3 827 300 259 138 9 chr4 31814149 31814258 -123815862 + MER20 DNA MER1_type 52 174 -45 3 827 7733 86 12 9 chr4 31816341 31817632 -123812488 - L1_Mus3 LINE L1 -1 6637 5343 3 827 5131 95 8 4 chr4 31817635 31818355 -123811765 + L1_Mus4 LINE L1 5912 6634 -2 3 827 383 306 82 0 chr4 31818418 31818552 -123811568 - MER44D DNA MER2_type -552 153 9 3 827 320 356 100 28 chr4 31818578 31818789 -123811331 + MLT2D LTR ERVL 92 320 -94 3 827 1491 163 21 231 chr4 31818789 31819275 -123810845 + ORR1C2 LTR MaLR 1 384 0 3 827 320 356 100 28 chr4 31819275 31819352 -123810768 + MLT2D LTR ERVL 321 401 -13 3 827 1759 173 0 9 chr4 31820417 31820732 -123809388 - Lx2 LINE L1 0 6997 6686 3 827 25 0 0 0 chr4 31820830 31820855 -123809265 + AT_rich Low_complexity Low_complexity 1 25 0 3 827 554 0 0 0 chr4 31821653 31821719 -123808401 + L1_Mus1 LINE L1 6500 6565 -2 3 827 4980 241 64 22 chr4 31822485 31823765 -123806355 + Lx7 LINE L1 6359 7692 -4 3 827 296 305 102 44 chr4 31824503 31824640 -123805480 + RSINE1 SINE B4 2 146 -19 3 827 2906 137 38 25 chr4 31824719 31824806 -123805314 - RLTR20C LTR ERVK 0 534 446 3 827 402 125 0 0 chr4 31824806 31824886 -123805234 + (CAGA)n Simple_repeat Simple_repeat 2 81 0 3 827 2906 137 38 25 chr4 31824886 31825323 -123804797 - RLTR20C LTR ERVK -89 445 4 3 827 2284 155 17 81 chr4 31826015 31826105 -123804015 - ORR1B1 LTR MaLR 0 394 338 3 827 1251 34 0 0 chr4 31826105 31826251 -123803869 - B1_Mus2 SINE Alu 0 147 2 3 827 2284 155 17 81 chr4 31826251 31826581 -123803539 - ORR1B1 LTR MaLR -57 337 1 3 827 5324 76 55 4 chr4 31827813 31828553 -123801567 - L1_Mus3 LINE L1 0 6638 5861 3 827 464 89 0 5 chr4 31828558 31828630 -123801490 + L1_Mus3 LINE L1 5736 5804 -1205 3 827 921 228 15 0 chr4 31829619 31829825 -123800295 - B3 SINE B2 -7 209 1 3 827 525 291 104 23 chr4 31831971 31832231 -123797889 + L1ME3B LINE L1 5556 5836 -404 3 827 210 364 99 0 chr4 31832594 31832715 -123797405 - L3 LINE CR1 -401 4088 3956 3 827 296 302 10 8 chr4 31833554 31833706 -123796414 + L1M LINE L1 5285 5437 -727 3 827 292 233 17 0 chr4 31834044 31834104 -123796016 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 827 552 149 16 16 chr4 31834114 31834237 -123795883 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 3 827 205 230 27 0 chr4 31834247 31834321 -123795799 + (TATG)n Simple_repeat Simple_repeat 4 79 0 3 827 910 231 21 0 chr4 31834605 31834791 -123795329 + B3 SINE B2 2 191 -25 3 827 719 295 163 45 chr4 31835863 31836304 -123793816 + MER21B LTR ERV1 65 557 -306 3 827 251 268 0 0 chr4 31836582 31836638 -123793482 + GA-rich Low_complexity Low_complexity 3 58 0 3 827 1652 191 56 3 chr4 31836664 31837021 -123793099 - Lx9 LINE L1 0 7644 7269 3 827 603 269 6 28 chr4 31837630 31837810 -123792310 - L1MA9 LINE L1 -5 6307 6132 3 827 300 241 86 35 chr4 31838124 31838240 -123791880 - L1MA9 LINE L1 -179 6133 6012 3 827 1223 268 98 52 chr4 31838473 31838953 -123791167 + Lx8 LINE L1 6843 7344 -129 3 827 328 284 172 54 chr4 31838854 31839040 -123791080 + RMER1C Other Other 1117 1324 -18 3 827 186 43 0 0 chr4 31839818 31839841 -123790279 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 827 4013 220 62 40 chr4 31839841 31840831 -123789289 - RMER1A Other Other -12 1018 8 3 827 1732 275 31 97 chr4 31840833 31841525 -123788595 - RMER1B Other Other -558 508 7 3 827 659 44 9 33 chr4 31841610 31841728 -123788392 - MTB LTR MaLR -158 238 131 3 827 216 0 0 0 chr4 31844109 31844133 -123785987 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 827 309 109 0 0 chr4 31845191 31845237 -123784883 + (GGA)n Simple_repeat Simple_repeat 3 48 0 3 827 401 241 42 33 chr4 31845263 31845383 -123784737 - MTB LTR MaLR -258 121 1 3 827 393 256 0 0 chr4 31846555 31846637 -123783483 - ID SINE ID -141 83 2 3 827 657 25 0 0 chr4 31846901 31846980 -123783140 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 3 827 218 57 57 0 chr4 31847663 31847698 -123782422 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 3 828 3764 185 20 12 chr4 31852729 31853417 -123776703 + Lx5 LINE L1 6354 7047 -3 3 828 225 243 26 26 chr4 31853558 31853634 -123776486 - MTE2a LTR MaLR -9 370 295 3 828 21 0 0 0 chr4 31853641 31853662 -123776458 + GC_rich Low_complexity Low_complexity 1 21 0 3 828 242 235 39 0 chr4 31854231 31854282 -123775838 + L1MA5 LINE L1 5872 5924 -376 3 828 1070 48 5 55 chr4 31854299 31854519 -123775601 + (TAGA)n Simple_repeat Simple_repeat 1 209 0 3 828 654 211 68 11 chr4 31855537 31855611 -123774509 - MT2A LTR ERVL 0 533 460 3 828 495 0 0 0 chr4 31855611 31855666 -123774454 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 828 654 233 62 24 chr4 31855666 31855807 -123774313 - MT2A LTR ERVL -76 525 347 3 828 826 294 89 18 chr4 31856435 31856816 -123773304 - Lx7 LINE L1 -405 7291 6884 3 828 546 193 315 20 chr4 31857712 31857963 -123772157 + MTD LTR MaLR 14 360 -59 3 828 192 158 0 0 chr4 31858005 31858043 -123772077 + T-rich Low_complexity Low_complexity 1 38 0 3 828 1315 217 111 36 chr4 31858139 31858265 -123771855 + MTD LTR MaLR 3 134 -285 3 828 327 85 0 0 chr4 31858265 31858312 -123771808 + (ATTG)n Simple_repeat Simple_repeat 1 47 0 3 828 1315 217 111 36 chr4 31858312 31858572 -123771548 + MTD LTR MaLR 135 418 -1 3 828 849 138 0 0 chr4 31859041 31859186 -123770934 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 3 828 962 113 13 0 chr4 31859263 31859422 -123770698 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 3 828 437 0 19 0 chr4 31859507 31859560 -123770560 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 3 828 21 0 0 0 chr4 31860271 31860292 -123769828 + AT_rich Low_complexity Low_complexity 1 21 0 3 828 2487 38 92 0 chr4 31860984 31861301 -123768819 + ORR1A1 LTR MaLR 1 346 0 3 828 301 292 123 31 chr4 31861686 31861818 -123768302 + L1ME3B LINE L1 5678 5822 -418 3 828 612 34 56 0 chr4 31861818 31861907 -123768213 + L1Md_F2 LINE L1 6487 6580 -2 3 828 301 292 123 31 chr4 31861907 31862034 -123768086 + L1ME3B LINE L1 5823 5962 -278 3 828 239 79 26 0 chr4 31862034 31862072 -123768048 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 828 301 292 123 31 chr4 31862072 31862136 -123767984 + L1ME3B LINE L1 5963 6031 -209 3 828 246 247 34 45 chr4 31862200 31862289 -123767831 + U6 snRNA snRNA 2 89 -18 3 828 615 71 0 0 chr4 31862461 31862546 -123767574 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 3 828 5844 55 1 18 chr4 31862653 31863907 -123766213 + L1Md_A LINE L1 1 752 -5972 3 828 39239 12 1 3 chr4 31863896 31870729 -123759391 + L1Md_A LINE L1 1 5586 -297 3 828 9239 1 0 0 chr4 31870729 31871725 -123758395 + L1Md_A LINE L1 5587 6582 0 3 828 241 281 104 0 chr4 31872750 31872846 -123757274 - RMER12 LTR ERVK -467 855 750 3 828 363 89 0 0 chr4 31873027 31873083 -123757037 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 828 200 174 43 0 chr4 31873310 31873342 -123756778 + A-rich Low_complexity Low_complexity 2 35 0 3 828 590 273 111 20 chr4 31873342 31873540 -123756580 + B3 SINE B2 1 216 0 3 828 200 174 43 0 chr4 31873540 31873553 -123756567 + A-rich Low_complexity Low_complexity 36 48 0 3 828 505 303 106 4 chr4 31873597 31873852 -123756268 + L1MEg LINE L1 792 1072 -5012 3 828 913 298 18 44 chr4 31874600 31875218 -123754902 + L1_Mur3 LINE L1 844 1443 -4437 3 828 952 245 50 36 chr4 31875219 31875579 -123754541 + L1_Mur3 LINE L1 87 451 -7277 3 828 1312 190 61 3 chr4 31875574 31875886 -123754234 + L1_Mur3 LINE L1 1010 1339 -6389 3 828 6964 182 39 15 chr4 31875869 31877433 -123752687 + Lx5 LINE L1 5431 7046 -4 3 828 6033 197 31 19 chr4 31877442 31878952 -123751168 + Lx6 LINE L1 5351 6879 -581 3 828 452 275 21 14 chr4 31878950 31879094 -123751026 + Lx6 LINE L1 7143 7287 -173 3 828 4180 224 121 101 chr4 31879093 31879850 -123750270 + L1_Mur3 LINE L1 1429 2255 -3625 3 828 628 116 0 0 chr4 31879850 31879945 -123750175 + MTB_Mm LTR MaLR 1 95 -312 3 828 449 36 0 0 chr4 31879939 31879995 -123750125 + MTB_Mm LTR MaLR 345 400 0 3 828 4180 224 121 101 chr4 31879995 31881277 -123748843 + L1_Mur3 LINE L1 2256 3657 -2223 3 828 256 61 0 0 chr4 31881273 31881306 -123748814 + L1_Mur1 LINE L1 5508 5540 -346 3 828 6693 34 0 0 chr4 31881307 31882080 -123748040 + L1Md_T LINE L1 5809 6581 -1 3 828 183 80 0 0 chr4 31882103 31882128 -123747992 + (A)n Simple_repeat Simple_repeat 1 25 0 3 828 6901 181 24 12 chr4 31882130 31883580 -123746540 + Lx2B LINE L1 5516 7000 0 3 828 634 221 90 13 chr4 31883589 31883745 -123746375 + L1_Mur3 LINE L1 3660 3827 -2053 3 828 2931 35 3 11 chr4 31883846 31884195 -123745925 + ORR1A0 LTR MaLR 1 346 0 3 828 4400 249 58 15 chr4 31884273 31885388 -123744732 + Lx7 LINE L1 6159 7321 -375 3 828 304 73 0 0 chr4 31885398 31885439 -123744681 - HAL1-3A_ME LINE L1 -841 2017 1977 3 828 363 149 0 0 chr4 31885489 31885563 -123744557 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 828 1435 186 24 17 chr4 31885648 31885943 -123744177 - MTC LTR MaLR 0 421 125 3 828 3056 66 0 3 chr4 31885943 31886325 -123743795 + L1_Mus2 LINE L1 6185 6565 -1 3 828 1300 222 23 128 chr4 31886325 31886468 -123743652 - MTC LTR MaLR -292 115 15 3 828 692 234 50 6 chr4 31886945 31887104 -123743016 + MER20 DNA MER1_type 1 166 -53 3 828 189 0 0 0 chr4 31888683 31888704 -123741416 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 3 828 423 0 0 0 chr4 31888706 31888753 -123741367 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 3 828 528 59 0 0 chr4 31888908 31888976 -123741144 + (GGAGA)n Simple_repeat Simple_repeat 3 70 0 3 828 1571 0 6 0 chr4 31888979 31889158 -123740962 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 828 234 0 0 0 chr4 31890936 31890962 -123739158 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 828 408 341 54 8 chr4 31891001 31891131 -123738989 - RSINE1 SINE B4 -21 144 9 3 828 315 0 0 0 chr4 31891249 31891284 -123738836 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 3 828 365 290 50 0 chr4 31891483 31891583 -123738537 + B1F SINE Alu 10 114 -35 3 828 984 99 0 0 chr4 31891594 31891736 -123738384 + (GGGAA)n Simple_repeat Simple_repeat 4 145 0 3 828 796 314 31 33 chr4 31891806 31892165 -123737955 - L1MA9 LINE L1 -337 5975 5618 3 828 3473 35 0 0 chr4 31892669 31893065 -123737055 - MTA_Mm LTR MaLR 0 396 1 3 828 1251 301 60 37 chr4 31893461 31894032 -123736088 - Lx6 LINE L1 -68 7392 6486 4 828 573 227 0 0 chr4 31894034 31894175 -123735945 + CT-rich Low_complexity Low_complexity 2 142 0 4 828 1116 240 4 0 chr4 31894214 31894476 -123735644 + Lx5 LINE L1 6224 6703 -757 4 828 546 57 0 0 chr4 31896065 31896135 -123733985 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 828 957 251 87 64 chr4 31897380 31897771 -123732349 + MTE2a LTR MaLR 1 405 -14 4 828 25966 152 15 14 chr4 31898170 31903455 -123726665 - Lx2 LINE L1 -311 6686 1638 4 828 3014 40 0 0 chr4 31903455 31903801 -123726319 - ORR1A0 LTR MaLR 0 346 1 4 828 25966 130 8 41 chr4 31903801 31904261 -123725859 - Lx2 LINE L1 -4246 1637 1195 4 828 313 23 0 0 chr4 31904261 31904305 -123725815 - L1_Mus2 LINE L1 -1 6565 6522 4 828 3229 86 0 81 chr4 31904305 31904654 -123725466 - Lx2 LINE L1 -5463 1194 854 4 828 21 0 0 0 chr4 31904857 31904878 -123725242 + AT_rich Low_complexity Low_complexity 1 21 0 4 828 1324 99 124 0 chr4 31905937 31906138 -123723982 - URR1A DNA MER1_type 0 226 1 4 828 486 0 0 0 chr4 31907869 31907923 -123722197 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 828 223 346 48 9 chr4 31908163 31908268 -123721852 + MIRb SINE MIR 49 157 -111 4 828 235 324 19 19 chr4 31909878 31909985 -123720135 - MER5A1 DNA MER1_type -58 108 2 4 828 2618 199 10 45 chr4 31912345 31912940 -123717180 - RMER15 LTR ERVL 0 575 2 4 828 1148 278 57 17 chr4 31913136 31913538 -123716582 + MTD LTR MaLR 1 418 -1 4 828 1234 268 50 14 chr4 31913722 31914139 -123715981 + Lx8 LINE L1 7005 7436 -37 4 828 28 29 0 0 chr4 31914176 31914211 -123715909 + AT_rich Low_complexity Low_complexity 1 35 0 4 828 322 230 44 33 chr4 31914220 31914310 -123715810 + MER81 DNA AcHobo 24 114 0 4 828 420 20 0 0 chr4 31914780 31914829 -123715291 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 828 1145 87 26 6 chr4 31914832 31915520 -123714600 + (TAGA)n Simple_repeat Simple_repeat 1 702 0 4 828 940 147 28 34 chr4 31915801 31915977 -123714143 + B2_Mm2 SINE B2 1 175 -20 4 828 394 289 148 68 chr4 31916424 31916513 -123713607 - B4A SINE B4 0 292 200 4 828 531 0 0 0 chr4 31916513 31916572 -123713548 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 828 333 0 0 0 chr4 31916572 31916608 -123713512 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 828 394 289 148 68 chr4 31916608 31916781 -123713339 - B4A SINE B4 -93 199 9 4 828 22 35 0 0 chr4 31916845 31916874 -123713246 + AT_rich Low_complexity Low_complexity 1 29 0 4 828 189 0 0 0 chr4 31918016 31918037 -123712083 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 828 643 304 22 0 chr4 31918666 31918847 -123711273 + Lx6 LINE L1 7140 7324 -136 4 828 276 225 121 107 chr4 31918838 31918925 -123711195 + Lx6 LINE L1 7470 7556 -140 4 828 1161 56 14 0 chr4 31918925 31919069 -123711051 - B1_Mm SINE Alu 0 147 2 4 828 351 210 98 69 chr4 31919069 31919205 -123710915 + Lx6 LINE L1 7313 7449 -11 4 828 198 0 0 0 chr4 31919206 31919228 -123710892 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 828 216 0 0 0 chr4 31919804 31919828 -123710292 + (CAGAA)n Simple_repeat Simple_repeat 1 24 0 4 828 261 0 0 0 chr4 31920073 31920102 -123710018 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 828 1176 63 0 19 chr4 31920226 31920552 -123709568 + (CA)n Simple_repeat Simple_repeat 1 319 0 4 828 22 35 0 0 chr4 31921979 31922008 -123708112 + AT_rich Low_complexity Low_complexity 1 29 0 4 828 486 0 0 0 chr4 31922547 31922601 -123707519 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 828 248 300 58 25 chr4 31924657 31924853 -123705267 + MIR SINE MIR 45 253 -15 4 828 206 268 57 82 chr4 31925473 31925595 -123704525 - MIR SINE MIR -60 148 30 4 828 514 193 23 6 chr4 31926162 31926334 -123703786 + (CA)n Simple_repeat Simple_repeat 1 175 0 4 828 203 204 20 20 chr4 31926337 31926387 -123703733 + CT-rich Low_complexity Low_complexity 2 51 0 4 828 204 188 0 0 chr4 31926349 31926381 -123703739 + polypyrimidine Low_complexity Low_complexity 3 34 0 4 828 541 293 57 0 chr4 31927576 31927716 -123702404 + B3 SINE B2 2 149 -67 4 828 460 250 7 52 chr4 31928684 31928819 -123701301 - MTEa LTR MaLR -11 368 240 4 828 1041 284 7 7 chr4 31928834 31929107 -123701013 - MTEa LTR MaLR -102 277 5 4 828 1360 267 74 31 chr4 31929128 31929549 -123700571 - MTEa-int LTR MaLR -1140 440 2 4 828 571 244 163 22 chr4 31929552 31929736 -123700384 - MTEa LTR MaLR -3 376 167 4 828 585 276 15 0 chr4 31929756 31929890 -123700230 - RSINE1 SINE B4 -26 139 4 4 828 735 151 0 0 chr4 31929911 31930037 -123700083 + CT-rich Low_complexity Low_complexity 2 127 0 4 828 547 257 45 39 chr4 31930039 31930217 -123699903 - MTEa LTR MaLR -196 183 5 4 828 238 401 39 26 chr4 31930418 31930574 -123699546 + LTR16B2 LTR ERVL 2 159 -303 4 828 1772 155 66 12 chr4 31930579 31930913 -123699207 - ORR1B2 LTR MaLR 0 367 16 4 828 189 0 0 0 chr4 31931175 31931196 -123698924 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 828 246 132 0 0 chr4 31932098 31932151 -123697969 + (T)n Simple_repeat Simple_repeat 1 53 0 4 828 222 37 0 0 chr4 31932168 31932195 -123697925 + (TTC)n Simple_repeat Simple_repeat 1 27 0 4 828 288 0 0 0 chr4 31932417 31932449 -123697671 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 4 828 740 246 103 0 chr4 31932449 31932644 -123697476 - B3 SINE B2 -1 215 1 4 828 428 333 0 0 chr4 31932925 31933042 -123697078 + PB1D10 SINE Alu 1 117 0 4 828 305 260 25 25 chr4 31933042 31933114 -123697006 + ID4_ SINE ID 4 77 -6 4 828 333 0 0 0 chr4 31933114 31933151 -123696969 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 828 305 277 11 461 chr4 31933151 31933165 -123696955 + ID4_ SINE ID 76 89 -63 4 828 1372 187 118 46 chr4 31933803 31934150 -123695970 + ORR1D1 LTR MaLR 3 374 0 4 828 4053 215 10 24 chr4 31934150 31935037 -123695083 + ORR1D1-int LTR MaLR 1 875 -495 4 828 1567 236 16 21 chr4 31935037 31935413 -123694707 + ORR1D1 LTR MaLR 1 374 0 4 828 1496 237 163 5 chr4 31935418 31935830 -123694290 + ORR1D1-int LTR MaLR 880 1356 -14 4 828 1304 184 169 79 chr4 31935832 31936175 -123693945 + ORR1D1 LTR MaLR 1 374 0 4 828 275 282 39 0 chr4 31936246 31936324 -123693796 + ID4_ SINE ID 3 83 0 4 828 657 224 66 177 chr4 31936850 31937121 -123692999 - MTEb LTR MaLR -31 348 108 4 828 21 0 0 0 chr4 31937549 31937570 -123692550 + AT_rich Low_complexity Low_complexity 1 21 0 4 828 342 221 108 4 chr4 31937612 31937718 -123692402 - MTEa LTR MaLR 0 379 266 4 828 461 219 79 0 chr4 31937929 31938043 -123692077 + ORR1E LTR MaLR 1 123 -236 4 828 237 333 0 89 chr4 31938110 31938222 -123691898 - LTR41 LTR ERVL -574 194 93 4 828 415 283 7 58 chr4 31940185 31940339 -123689781 + MLT1D LTR MaLR 22 167 -338 4 828 766 218 89 25 chr4 31940797 31940999 -123689121 - B3 SINE B2 -1 215 1 4 828 221 271 117 35 chr4 31941354 31941499 -123688621 + L2 LINE L2 2737 2893 -526 4 828 1161 183 22 80 chr4 31941780 31942054 -123688066 - RMER1B Other Other -3 1063 806 4 828 2036 163 76 23 chr4 31942066 31942462 -123687658 + RMER1B Other Other 421 837 -229 4 828 205 182 0 96 chr4 31942701 31942733 -123687387 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 828 370 262 135 0 chr4 31942733 31942859 -123687261 - B1F2 SINE Alu -6 143 1 4 828 205 182 0 96 chr4 31942859 31942899 -123687221 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 828 200 352 57 0 chr4 31943475 31943580 -123686540 - L2c LINE L2 -239 3148 3038 4 828 261 83 0 0 chr4 31943666 31943702 -123686418 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 828 979 296 41 38 chr4 31943721 31943788 -123686332 - B4A SINE B4 0 292 231 4 828 1183 228 9 5 chr4 31943788 31944000 -123686120 - B3 SINE B2 -3 213 1 4 828 979 296 41 38 chr4 31944000 31944223 -123685897 - B4A SINE B4 -62 230 1 4 828 255 310 206 15 chr4 31944368 31944499 -123685621 - MIR3 SINE MIR -6 202 47 4 828 1276 139 4 168 chr4 31944583 31944851 -123685269 + URR1B DNA MER1_type 1 224 -1 4 828 276 254 0 0 chr4 31946983 31947038 -123683082 + ID4_ SINE ID 13 67 -16 4 828 356 341 24 16 chr4 31947073 31947198 -123682922 + ID_B1 SINE B4 78 203 -21 4 828 214 238 25 4 chr4 31947323 31947406 -123682714 - MIR SINE MIR 0 268 184 4 828 1251 223 77 93 chr4 31947619 31947995 -123682125 - MTE2a LTR MaLR -4 375 6 4 828 1473 298 94 28 chr4 31948030 31948670 -123681450 - L1MB3 LINE L1 -56 6127 5446 4 828 202 200 0 0 chr4 31949166 31949201 -123680919 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 828 1423 289 52 39 chr4 31949227 31950067 -123680053 - L1MA4 LINE L1 -393 5907 5006 4 828 369 274 178 21 chr4 31950079 31950321 -123679799 + L1M2 LINE L1 4590 4869 -1274 4 828 2180 80 56 0 chr4 31950325 31950627 -123679493 - ORR1A2 LTR MaLR -8 319 1 4 828 1082 306 47 14 chr4 31950779 31951143 -123678977 + Lx8 LINE L1 6779 7154 -319 4 828 44 75 0 0 chr4 31951407 31951500 -123678620 + AT_rich Low_complexity Low_complexity 1 93 0 4 828 2636 145 46 16 chr4 31951670 31952105 -123678015 + Lx2 LINE L1 6550 6997 0 4 828 6673 89 1 5 chr4 31952432 31953533 -123676587 - L1_Mus3 LINE L1 -181 6457 5361 4 828 8232 217 45 40 chr4 31953530 31955411 -123674709 - Lx7 LINE L1 -957 6739 4851 4 828 297 0 0 0 chr4 31955411 31955444 -123674676 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 828 8232 199 50 38 chr4 31955444 31956098 -123674022 - Lx7 LINE L1 -1030 4850 4196 4 828 405 0 0 0 chr4 31956098 31956143 -123673977 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 4 828 8232 246 95 40 chr4 31956143 31956761 -123673359 - Lx7 LINE L1 -1932 4211 3384 4 828 204 40 0 0 chr4 31956761 31956786 -123673334 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 828 3170 291 138 43 chr4 31956786 31957168 -123672952 - Lx7 LINE L1 -2760 3383 3026 4 828 252 246 46 0 chr4 31957511 31957576 -123672544 + ID4_ SINE ID 3 70 -13 4 828 414 317 88 14 chr4 31957592 31957739 -123672381 - Charlie10a DNA MER1_type -83 197 40 4 828 255 176 0 0 chr4 31958013 31958064 -123672056 + Lx6 LINE L1 7180 7230 -230 4 828 3207 166 12 34 chr4 31958065 31958653 -123671467 - RLTR20B3 LTR ERVK -2 575 1 4 828 662 247 40 115 chr4 31958653 31958905 -123671215 + Lx6 LINE L1 7224 7456 -4 4 828 1115 243 48 64 chr4 31959269 31959564 -123670556 + B4A SINE B4 3 292 0 4 828 261 0 0 0 chr4 31959569 31959598 -123670522 + (GGGTG)n Simple_repeat Simple_repeat 2 30 0 4 828 587 349 81 20 chr4 31960187 31960544 -123669576 + MamRep605 Unknown Unknown 452 830 -46 4 828 330 274 30 107 chr4 31961317 31961448 -123668672 + L2c LINE L2 3254 3374 -13 5 828 222 303 0 13 chr4 31961463 31961540 -123668580 + (TGGA)n Simple_repeat Simple_repeat 4 79 0 5 828 1344 107 63 0 chr4 31961622 31961827 -123668293 - URR1A DNA MER1_type -7 219 2 5 828 1107 240 0 5 chr4 31961995 31962204 -123667916 + B3 SINE B2 3 210 -6 5 828 518 268 78 12 chr4 31962225 31962391 -123667729 + MLT1C LTR MaLR 34 210 -257 5 828 691 321 6 6 chr4 31962710 31962870 -123667250 + RSINE1 SINE B4 1 160 -5 5 828 516 260 8 54 chr4 31962875 31963005 -123667115 + RMER20B LTR ERVK 1 124 -503 5 828 743 251 184 14 chr4 31963159 31963480 -123666640 + RMER20B LTR ERVK 134 497 -19 5 828 268 254 0 0 chr4 31963651 31963718 -123666402 + MLT1B LTR MaLR 74 140 -250 5 828 242 359 131 23 chr4 31963935 31964149 -123665971 - MIRb SINE MIR 0 268 32 5 828 873 128 0 0 chr4 31965252 31965432 -123664688 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 828 231 0 0 71 chr4 31968225 31968267 -123661853 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 828 816 165 60 8 chr4 31970483 31970617 -123659503 + B1_Mur2 SINE Alu 1 141 -8 5 828 914 106 106 0 chr4 31970640 31970810 -123659310 - Lx9 LINE L1 -4 7640 7453 5 828 606 236 0 182 chr4 31970830 31971006 -123659114 - B1F1 SINE Alu -4 145 2 5 828 286 336 17 93 chr4 31971023 31971141 -123658979 + PB1D10 SINE Alu 1 109 -8 5 828 228 350 12 36 chr4 31971192 31971275 -123658845 + MIR SINE MIR 27 107 -101 5 828 2769 195 140 17 chr4 31972281 31972583 -123657537 + RMER19A LTR ERVK 1 321 -416 5 828 2801 34 0 45 chr4 31972583 31972920 -123657200 + RLTRETN_Mm LTR ERVK 1 322 0 5 828 2769 195 140 17 chr4 31972920 31973273 -123656847 + RMER19A LTR ERVK 322 737 0 5 828 211 355 15 53 chr4 31973336 31973467 -123656653 - MIRc SINE MIR -78 190 65 5 828 1625 169 79 12 chr4 31973732 31974073 -123656047 + RLTR40 LTR ERVK 1 364 -453 5 828 1834 209 21 157 chr4 31974207 31974729 -123655391 + RLTR40 LTR ERVK 367 817 0 5 828 22 70 0 0 chr4 31975488 31975531 -123654589 + AT_rich Low_complexity Low_complexity 1 43 0 5 828 1347 199 72 6 chr4 31976103 31976421 -123653699 + Lx9 LINE L1 7113 7451 -193 5 828 348 24 0 0 chr4 31976437 31976478 -123653642 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 828 479 192 58 0 chr4 31976478 31976598 -123653522 + Lx9 LINE L1 7517 7643 -1 5 828 358 382 37 0 chr4 31976602 31976819 -123653301 + L3 LINE CR1 4013 4237 -252 5 828 570 294 43 0 chr4 31977269 31977456 -123652664 - MER82 DNA MER2_type -450 203 9 5 828 2042 186 64 3 chr4 31977727 31978104 -123652016 + MTD LTR MaLR 18 417 -2 5 828 527 299 25 56 chr4 31978388 31978586 -123651534 - MLT1A0 LTR MaLR -171 194 3 5 828 276 185 0 0 chr4 31978819 31978873 -123651247 + (TTA)n Simple_repeat Simple_repeat 2 55 0 5 828 314 269 43 0 chr4 31978924 31979017 -123651103 - LTR78 LTR ERV1 -113 1191 1095 5 828 285 29 0 0 chr4 31979055 31979089 -123651031 + (T)n Simple_repeat Simple_repeat 1 34 0 5 828 459 0 0 0 chr4 31979229 31979280 -123650840 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 103 41902 10 0 6 chr4 31979564 31985721 -123644399 - L1Md_A LINE L1 -1 6581 466 5 829 396 396 56 58 chr4 31986156 31986566 -123643554 - LTR78 LTR ERV1 -890 414 6 5 829 28 29 0 0 chr4 31986748 31986783 -123643337 + AT_rich Low_complexity Low_complexity 1 35 0 5 829 270 327 389 10 chr4 31987575 31987889 -123642231 + Charlie7 DNA MER1_type 1 433 -2179 5 829 360 296 95 38 chr4 31988187 31988398 -123641722 + Charlie7 DNA MER1_type 1976 2198 -414 5 829 1241 74 0 6 chr4 31988512 31988667 -123641453 + B2_Mm2 SINE B2 1 155 -40 5 829 552 30 0 0 chr4 31988667 31988733 -123641387 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 829 282 264 11 11 chr4 31989372 31989464 -123640656 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 829 298 343 85 73 chr4 31989499 31989747 -123640373 - B4 SINE B4 -22 270 20 5 829 371 288 87 8 chr4 31989751 31989877 -123640243 + MTE2a LTR MaLR 6 141 -238 5 829 571 286 135 40 chr4 31989810 31990208 -123639912 + MT2A LTR ERVL 75 562 0 5 829 374 279 261 4 chr4 31990252 31990490 -123639630 - RMER15 LTR ERVL 0 575 277 5 829 755 40 10 0 chr4 31990730 31990829 -123639291 + (TCC)n Simple_repeat Simple_repeat 3 102 0 5 829 577 194 59 30 chr4 31990830 31991032 -123639088 - RMER17C LTR ERVK -138 272 65 5 829 378 281 56 37 chr4 31991017 31991124 -123638996 - 7SK RNA RNA -159 172 64 5 829 1711 189 66 41 chr4 31991124 31991488 -123638632 - ORR1D1 LTR MaLR 0 374 2 5 829 1842 224 69 47 chr4 31991488 31991983 -123638137 - RMER19C LTR ERVK 0 611 106 5 829 250 321 35 23 chr4 31991984 31992070 -123638050 - 7SK RNA RNA -243 88 2 5 829 468 370 43 0 chr4 31992092 31992303 -123637817 - MER58A DNA MER1_type -4 220 1 5 829 208 309 101 47 chr4 31995249 31995378 -123634742 - MIRb SINE MIR -107 161 26 5 829 228 184 0 0 chr4 31995697 31995746 -123634374 + GA-rich Low_complexity Low_complexity 4 52 0 5 829 2304 129 103 6 chr4 31996888 31997247 -123632873 - ORR1B1 LTR MaLR 0 394 1 5 829 1644 36 0 45 chr4 31997821 31998022 -123632098 + B2_Mm2 SINE B2 1 192 -3 5 829 701 328 115 42 chr4 31998441 31998944 -123631176 + LTR33C LTR ERVL 73 612 -17 5 829 24 77 0 0 chr4 31999600 31999652 -123630468 + AT_rich Low_complexity Low_complexity 1 52 0 5 829 433 191 21 43 chr4 31999900 31999993 -123630127 - MTE2b LTR MaLR 0 379 289 5 829 544 263 57 32 chr4 32000000 32000157 -123629963 + ORR1E LTR MaLR 16 176 -194 1 829 803 183 6 0 chr4 32000157 32000332 -123629788 + CT-rich Low_complexity Low_complexity 2 177 0 2 829 546 258 112 10 chr4 32000332 32000538 -123629582 + ORR1E LTR MaLR 150 359 -11 1 829 236 227 0 11 chr4 32001426 32001515 -123628605 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 829 603 74 0 0 chr4 32001642 32001723 -123628397 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 829 181 338 15 15 chr4 32002066 32002132 -123627988 + MIRc SINE MIR 177 242 -26 5 829 1304 235 53 94 chr4 32003708 32004045 -123626075 + MTE2a LTR MaLR 1 324 -55 6 829 408 16 16 32 chr4 32004045 32004108 -123626012 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 7 829 1253 29 0 0 chr4 32004108 32004245 -123625875 - B1_Mm SINE Alu -9 138 2 8 829 1304 235 53 94 chr4 32004245 32004301 -123625819 + MTE2a LTR MaLR 325 378 -1 6 829 599 204 11 23 chr4 32004933 32005109 -123625011 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 9 829 225 214 0 0 chr4 32005110 32005152 -123624968 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 829 333 292 62 51 chr4 32005406 32005601 -123624519 + L1MC4 LINE L1 6445 6641 -1401 1 829 1242 241 104 0 chr4 32005635 32005963 -123624157 + ORR1D2 LTR MaLR 9 370 0 1 829 1765 284 75 16 chr4 32006060 32006636 -123623484 + Lx8 LINE L1 6504 7113 -360 1 829 1483 71 6 6 chr4 32006770 32006953 -123623167 + B2_Mm2 SINE B2 1 183 -12 1 829 364 176 81 23 chr4 32006977 32007064 -123623056 + L1MC4 LINE L1 6977 7068 -974 1 829 771 221 21 24 chr4 32007225 32007397 -123622723 - B3 SINE B2 0 216 45 1 829 698 0 12 0 chr4 32007602 32007684 -123622436 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 1 829 243 244 0 0 chr4 32007736 32007781 -123622339 + PB1D7 SINE Alu 4 48 -72 1 829 216 0 0 0 chr4 32009718 32009742 -123620378 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 829 233 324 27 0 chr4 32011135 32011209 -123618911 + MIRm SINE MIR 199 274 -2 1 829 21 0 0 0 chr4 32013290 32013311 -123616809 + AT_rich Low_complexity Low_complexity 1 21 0 2 829 28 95 0 0 chr4 32013365 32013449 -123616671 + AT_rich Low_complexity Low_complexity 1 84 0 2 829 1614 218 112 18 chr4 32014572 32014955 -123615165 - MTD LTR MaLR 0 419 1 2 829 396 255 65 19 chr4 32015001 32015109 -123615011 + MIR SINE MIR 28 140 -122 2 829 403 246 24 63 chr4 32015208 32015334 -123614786 + B3 SINE B2 91 211 -5 2 829 747 0 0 0 chr4 32015361 32015444 -123614676 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 829 718 247 40 50 chr4 32015457 32015657 -123614463 + B3A SINE B2 1 198 0 2 829 259 347 0 0 chr4 32016700 32016775 -123613345 - ID4 SINE ID -8 75 1 2 829 21 0 0 0 chr4 32018341 32018362 -123611758 + AT_rich Low_complexity Low_complexity 1 21 0 2 829 674 248 19 13 chr4 32018600 32018755 -123611365 + RSINE1 SINE B4 2 157 -8 2 829 211 54 54 0 chr4 32018761 32018798 -123611322 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 829 800 20 10 0 chr4 32019339 32019437 -123610683 + (CATA)n Simple_repeat Simple_repeat 2 100 0 3 829 592 279 161 25 chr4 32020793 32021036 -123609084 + B4A SINE B4 3 278 -14 3 829 504 72 0 0 chr4 32021064 32021133 -123608987 + (CATA)n Simple_repeat Simple_repeat 1 69 0 3 829 276 186 0 0 chr4 32021299 32021358 -123608762 + T-rich Low_complexity Low_complexity 1 59 0 3 829 550 261 0 17 chr4 32021509 32021626 -123608494 + PB1D10 SINE Alu 1 115 -2 3 829 227 31 0 30 chr4 32022155 32022188 -123607932 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 829 189 0 0 0 chr4 32023240 32023261 -123606859 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 829 182 392 142 16 chr4 32023854 32023981 -123606139 + MIR3 SINE MIR 45 187 -21 3 829 23 0 0 0 chr4 32025323 32025346 -123604774 + AT_rich Low_complexity Low_complexity 1 23 0 3 829 183 93 45 23 chr4 32025973 32026017 -123604103 + GA-rich Low_complexity Low_complexity 5 49 0 4 829 228 260 0 0 chr4 32026736 32026786 -123603334 + Charlie15a DNA MER1_type 1 50 -174 4 829 413 328 35 30 chr4 32028630 32028828 -123601292 + LTR88c LTR Genie? 22 220 -642 4 829 1727 142 7 4 chr4 32028856 32029132 -123600988 + Lx7 LINE L1 6804 7080 -616 4 829 1278 207 79 151 chr4 32029126 32029493 -123600627 + Lx7 LINE L1 7228 7550 -146 4 829 380 20 20 0 chr4 32029493 32029542 -123600578 + (TTA)n Simple_repeat Simple_repeat 3 52 0 4 829 1278 207 79 151 chr4 32029542 32029663 -123600457 + Lx7 LINE L1 7551 7681 -15 4 829 522 31 0 0 chr4 32029663 32029727 -123600393 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 829 1278 207 79 151 chr4 32029727 32029742 -123600378 + Lx7 LINE L1 7682 7696 0 4 829 29 47 0 0 chr4 32029761 32029804 -123600316 + AT_rich Low_complexity Low_complexity 1 43 0 4 829 1059 97 20 20 chr4 32029811 32029959 -123600161 + B1_Mus1 SINE Alu 1 148 0 4 829 8341 48 8 0 chr4 32030820 32032402 -123597718 - L1Md_F2 LINE L1 0 6582 4989 4 829 355 276 67 0 chr4 32033272 32033377 -123596743 - L2a LINE L2 -4 3422 3311 4 829 198 0 0 0 chr4 32033829 32033851 -123596269 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 829 720 301 10 0 chr4 32034593 32034792 -123595328 + B3 SINE B2 16 216 0 5 829 267 308 98 49 chr4 32034789 32034953 -123595167 - MLT1K LTR MaLR -63 532 361 5 829 666 208 0 25 chr4 32035062 32035220 -123594900 - RCHARR1 DNA MER1_type 0 974 821 5 829 397 321 86 35 chr4 32035217 32035414 -123594706 - RCHARR1 DNA MER1_type -761 213 7 5 829 25 31 0 0 chr4 32035645 32035677 -123594443 + AT_rich Low_complexity Low_complexity 1 32 0 5 829 492 247 61 85 chr4 32035692 32035856 -123594264 - RSINE1 SINE B4 -4 161 2 5 829 1598 205 98 18 chr4 32036222 32036610 -123593510 + MTD LTR MaLR 1 419 0 5 829 231 348 8 92 chr4 32036692 32036822 -123593298 + L2a LINE L2 3299 3417 -9 5 829 289 264 25 102 chr4 32036852 32036970 -123593150 - PB1D10 SINE Alu -4 113 5 5 829 2315 135 32 93 chr4 32037228 32037734 -123592386 + IAPLTR2_Mm LTR ERVK 1 475 0 5 829 380 91 0 0 chr4 32037736 32037791 -123592329 + IAPEz-int LTR ERVK 3 57 -1930 5 829 982 111 27 86 chr4 32037789 32037976 -123592144 + IAPEz-int LTR ERVK 18 193 -6288 5 829 228 327 0 0 chr4 32037976 32038031 -123592089 + RLTR27 LTR ERVK 221 275 -34 6 829 241 309 0 0 chr4 32038057 32038112 -123592008 + RLTR27 LTR ERVK 221 275 -34 6 829 3488 61 22 16 chr4 32038112 32038678 -123591442 + IAPEz-int LTR ERVK 168 662 -5819 6 829 2190 75 0 0 chr4 32038678 32038956 -123591164 + IAPEz-int LTR ERVK 1359 1636 -4845 6 829 6076 50 3 16 chr4 32038955 32039711 -123590409 + IAPEz-int LTR ERVK 5736 6481 0 6 829 2329 139 30 93 chr4 32039711 32040218 -123589902 + IAPLTR2_Mm LTR ERVK 1 475 0 6 829 1090 108 6 0 chr4 32040583 32040741 -123589379 + B2_Mm1t SINE B2 2 160 -33 6 829 423 0 0 0 chr4 32040741 32040788 -123589332 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 6 829 621 0 0 0 chr4 32040796 32040865 -123589255 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 6 829 227 235 0 0 chr4 32040865 32040916 -123589204 + B1_Mur4 SINE Alu 100 150 0 6 829 501 17 0 0 chr4 32040916 32040974 -123589146 + (GAAA)n Simple_repeat Simple_repeat 4 61 0 6 829 1035 25 0 0 chr4 32040974 32041096 -123589024 + (GGAAA)n Simple_repeat Simple_repeat 4 125 0 6 829 2291 145 29 3 chr4 32041098 32041472 -123588648 - MTC LTR MaLR -37 384 1 6 829 427 336 28 14 chr4 32043428 32043573 -123586547 + RSINE1 SINE B4 2 148 -17 6 829 396 40 0 0 chr4 32043575 32043625 -123586495 + (CAGG)n Simple_repeat Simple_repeat 2 51 0 7 829 1104 99 11 34 chr4 32045210 32045388 -123584732 + Lx2 LINE L1 6824 6997 0 7 829 7889 26 7 2 chr4 32045961 32046873 -123583247 - L1Md_F3 LINE L1 -15 6569 5654 7 829 705 263 149 27 chr4 32046920 32047182 -123582938 - MTD LTR MaLR 0 419 126 7 829 212 100 0 24 chr4 32047511 32047552 -123582568 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 829 441 266 64 58 chr4 32047561 32047749 -123582371 - MER115 DNA Tip100 -10 683 495 7 829 419 269 117 18 chr4 32048105 32048268 -123581852 - RMER20B LTR ERVK -318 309 131 7 829 207 0 0 0 chr4 32048976 32048999 -123581121 + (T)n Simple_repeat Simple_repeat 1 23 0 7 829 1145 65 43 0 chr4 32048999 32049137 -123580983 - B1_Mus1 SINE Alu 0 148 5 7 829 187 350 25 0 chr4 32049339 32049419 -123580701 - L2 LINE L2 -1080 2339 2258 7 829 23 0 0 0 chr4 32049938 32049961 -123580159 + AT_rich Low_complexity Low_complexity 1 23 0 8 829 32 0 0 0 chr4 32051202 32051234 -123578886 + GC_rich Low_complexity Low_complexity 1 32 0 8 829 287 78 0 19 chr4 32051567 32051619 -123578501 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 8 829 212 343 120 14 chr4 32052389 32052531 -123577589 + MIRb SINE MIR 81 241 -27 8 829 295 260 103 37 chr4 32053957 32054093 -123576027 - MIRc SINE MIR -95 173 29 8 829 280 297 54 9 chr4 32054396 32054508 -123575612 + L2a LINE L2 3041 3157 -269 8 829 195 342 35 18 chr4 32054547 32054660 -123575460 + L2a LINE L2 3273 3387 0 8 829 22 0 0 0 chr4 32054810 32054832 -123575288 + AT_rich Low_complexity Low_complexity 1 22 0 8 829 344 203 103 12 chr4 32055367 32055484 -123574636 - ORR1E LTR MaLR -1 369 240 8 829 439 202 84 11 chr4 32056012 32056107 -123574013 - B4 SINE B4 -87 205 104 8 829 820 219 106 5 chr4 32056330 32056518 -123573602 - B3 SINE B2 -9 207 1 8 829 216 125 0 0 chr4 32056937 32056969 -123573151 - RSINE1 SINE B4 -50 115 84 9 829 1042 186 28 2 chr4 32057360 32057643 -123572477 - RMER10B LTR ERVL 0 398 2 9 829 244 338 103 26 chr4 32057793 32057948 -123572172 - MLT1H LTR MaLR -285 264 98 9 829 278 235 100 20 chr4 32061250 32061350 -123568770 - L1MB8 LINE L1 -175 6003 5896 9 829 302 301 67 10 chr4 32062974 32063078 -123567042 - HAL1 LINE L1 -2302 205 96 9 829 384 59 0 0 chr4 32063647 32063698 -123566422 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 829 335 238 42 24 chr4 32065052 32065220 -123564900 + (TTATA)n Simple_repeat Simple_repeat 3 173 0 9 829 1047 168 320 14 chr4 32065863 32066147 -123563973 - ORR1D1 LTR MaLR -1 373 3 9 829 26 50 0 0 chr4 32066539 32066579 -123563541 + AT_rich Low_complexity Low_complexity 1 40 0 9 829 296 329 13 0 chr4 32067916 32067995 -123562125 + ID4 SINE ID 2 81 -2 9 829 482 256 124 47 chr4 32068948 32069182 -123560938 - MER82 DNA MER2_type -333 320 69 1 829 298 85 0 10 chr4 32069356 32069404 -123560716 + B2_Mm2 SINE B2 74 120 -73 1 829 1132 78 0 0 chr4 32069553 32069707 -123560413 - B2_Mm2 SINE B2 -19 176 23 1 829 403 206 88 49 chr4 32069841 32069943 -123560177 + B1_Mur4 SINE Alu 45 150 0 1 829 1785 21 0 0 chr4 32070436 32070627 -123559493 + B2_Mm1t SINE B2 2 192 -1 1 829 1955 14 0 0 chr4 32070851 32071067 -123559053 + L1Md_T LINE L1 5371 5586 -297 1 829 9028 31 0 4 chr4 32071067 32072067 -123558053 + L1Md_T LINE L1 5587 6582 0 1 829 246 83 0 0 chr4 32072069 32072105 -123558015 - RLTR40 LTR ERVK -68 749 714 1 829 180 0 0 0 chr4 32072105 32072125 -123557995 + (A)n Simple_repeat Simple_repeat 1 20 0 1 829 759 209 43 27 chr4 32072125 32072312 -123557808 + B3 SINE B2 27 216 0 1 829 25 51 0 0 chr4 32072475 32072514 -123557606 + AT_rich Low_complexity Low_complexity 1 39 0 1 829 234 316 53 0 chr4 32073261 32073337 -123556783 - MIRc SINE MIR -170 98 19 1 829 312 270 67 0 chr4 32075207 32075296 -123554824 - PB1D9 SINE Alu -9 111 17 1 829 333 312 33 46 chr4 32077237 32077388 -123552732 - B1F SINE Alu 0 149 1 1 829 315 0 0 0 chr4 32077474 32077509 -123552611 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 1 829 276 307 102 0 chr4 32078365 32078502 -123551618 + L2 LINE L2 2420 2570 -849 1 829 336 264 97 35 chr4 32080577 32080691 -123549429 - MLT1J LTR MaLR -166 346 226 1 829 28 0 0 0 chr4 32082359 32082387 -123547733 + AT_rich Low_complexity Low_complexity 1 28 0 1 829 446 272 44 0 chr4 32082625 32082739 -123547381 + RSINE1 SINE B4 45 163 -2 1 829 22 0 0 0 chr4 32082800 32082822 -123547298 + AT_rich Low_complexity Low_complexity 1 22 0 1 829 198 103 0 0 chr4 32083427 32083456 -123546664 + (TTGG)n Simple_repeat Simple_repeat 1 29 0 1 829 360 212 48 36 chr4 32084499 32084582 -123545538 - B1_Mur4 SINE Alu -66 84 1 1 829 249 159 0 0 chr4 32085085 32085129 -123544991 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 829 233 250 54 0 chr4 32085561 32085617 -123544503 + LTR86A1 LTR ERVL 399 457 -56 1 829 556 56 0 0 chr4 32085645 32085716 -123544404 - U4 snRNA snRNA -74 71 1 1 829 422 266 9 35 chr4 32085777 32085890 -123544230 + PB1D9 SINE Alu 6 115 -5 1 829 877 147 44 0 chr4 32086659 32086795 -123543325 - B1_Mur2 SINE Alu -6 143 2 1 829 645 225 6 96 chr4 32086951 32087108 -123543012 + RSINE1 SINE B4 3 145 -20 1 829 384 77 0 0 chr4 32087108 32087160 -123542960 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 829 655 221 86 22 chr4 32090086 32090225 -123539895 + B1_Mur2 SINE Alu 2 149 0 1 829 653 283 54 11 chr4 32091975 32092161 -123537959 - ID_B1 SINE B4 -10 214 21 1 829 239 250 71 0 chr4 32093286 32093342 -123536778 + PB1D9 SINE Alu 61 120 0 1 829 251 0 59 0 chr4 32093629 32093663 -123536457 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 829 233 273 75 54 chr4 32094633 32094726 -123535394 + LTR16A LTR ERVL 35 129 -322 1 829 29 0 0 0 chr4 32095113 32095142 -123534978 + AT_rich Low_complexity Low_complexity 1 29 0 1 829 668 276 31 0 chr4 32095221 32095413 -123534707 - B3A SINE B2 0 198 1 1 829 363 251 137 58 chr4 32095480 32095670 -123534450 - B3 SINE B2 -7 209 5 1 829 228 239 43 29 chr4 32096776 32096788 -123533332 - ID_B1 SINE B4 -74 150 82 1 829 266 161 54 0 chr4 32096788 32096844 -123533276 - B1F2 SINE Alu -90 59 1 1 829 639 266 162 26 chr4 32098057 32098412 -123531708 - L1MA5A LINE L1 -373 5930 5516 1 829 258 257 17 27 chr4 32098408 32098494 -123531626 - L1M4 LINE L1 -709 5464 5378 1 829 2266 229 129 28 chr4 32098509 32099038 -123531082 - Lx8 LINE L1 -1 7472 6893 1 829 213 39 0 0 chr4 32099038 32099064 -123531056 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 1 829 2266 229 129 28 chr4 32099064 32099239 -123530881 - Lx8 LINE L1 -581 6892 6697 1 829 259 277 74 74 chr4 32099242 32099435 -123530685 - L1MA5A LINE L1 -756 5387 5183 1 829 441 0 0 0 chr4 32099435 32099484 -123530636 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 1 829 418 220 75 45 chr4 32099492 32099625 -123530495 - B1_Mur1 SINE Alu -12 137 1 1 829 259 277 74 74 chr4 32099625 32099679 -123530441 - L1MA5A LINE L1 -964 5179 5132 1 829 896 158 20 0 chr4 32100042 32100188 -123529932 + B1_Mur3 SINE Alu 1 149 0 1 829 1754 197 62 20 chr4 32101341 32101699 -123528421 - ORR1D1 LTR MaLR 0 374 2 1 829 225 329 45 32 chr4 32103073 32103086 -123527034 - YREP_Mm Unknown Unknown -1485 327 249 1 829 600 267 15 0 chr4 32103086 32103217 -123526903 + ID_B1 SINE B4 84 216 -8 1 829 446 237 97 117 chr4 32104306 32104502 -123525618 + B3A SINE B2 1 192 -6 1 829 518 230 8 42 chr4 32104507 32104625 -123525495 + PB1D9 SINE Alu 1 114 -6 1 829 291 256 33 65 chr4 32105334 32105426 -123524694 + RSINE1 SINE B4 65 153 -12 1 829 459 0 0 0 chr4 32109161 32109212 -123520908 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 829 574 281 76 6 chr4 32109532 32109704 -123520416 + B3 SINE B2 2 185 -31 1 829 261 0 0 0 chr4 32109715 32109744 -123520376 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 829 597 267 20 64 chr4 32110387 32110591 -123519529 - L1ME1 LINE L1 -7 6172 5978 1 829 3042 210 51 82 chr4 32110852 32111734 -123518386 - RLTR13A LTR ERVK 0 855 1 1 829 798 219 10 41 chr4 32111972 32112167 -123517953 + B3 SINE B2 28 216 0 1 830 390 200 229 36 chr4 32112756 32112896 -123517224 + L1_Mur3 LINE L1 4569 4736 -1144 1 830 952 257 73 3 chr4 32112887 32113176 -123516944 + L1_Mur3 LINE L1 4839 5147 -733 1 830 372 254 57 8 chr4 32113205 32113328 -123516792 - L1_Mur3 LINE L1 -6725 987 859 1 830 659 209 23 63 chr4 32113539 32113713 -123516407 + MTE2a LTR MaLR 206 372 -7 1 830 330 337 0 0 chr4 32113746 32113835 -123516285 + PB1D7 SINE Alu 22 110 -10 1 830 895 252 104 27 chr4 32113866 32114243 -123515877 + Lx9 LINE L1 5564 5996 -1648 1 830 324 0 0 0 chr4 32114394 32114430 -123515690 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 830 385 271 27 40 chr4 32114671 32114764 -123515356 - L1M5 LINE L1 -868 5576 5485 1 830 962 230 50 0 chr4 32114764 32114964 -123515156 - B3 SINE B2 -6 210 1 1 830 385 271 27 40 chr4 32114964 32115020 -123515100 - L1M5 LINE L1 -960 5484 5429 1 830 251 211 17 17 chr4 32115036 32115094 -123515026 - RMER1C Other Other -31 1311 1254 1 830 2141 72 26 0 chr4 32115198 32115502 -123514618 - ORR1A2 LTR MaLR -8 319 8 1 830 963 303 52 78 chr4 32115510 32116025 -123514095 - Lx8 LINE L1 -700 6773 6272 1 830 3344 46 0 130 chr4 32116640 32117141 -123512979 - RLTR10C LTR ERVK 0 436 1 1 830 45784 16 0 1 chr4 32117141 32122174 -123507946 - MMERVK10C-int LTR ERVK 0 7581 2552 1 830 384 95 0 0 chr4 32122180 32122243 -123507877 - MMERVK10C-int LTR ERVK -5634 1947 1885 1 830 313 175 0 0 chr4 32122248 32122305 -123507815 - MMERVK10C-int LTR ERVK -4261 1145 1089 1 830 673 248 152 70 chr4 32122292 32122681 -123507439 - MMERVK10C-int LTR ERVK -4819 2425 2075 1 830 881 152 4 177 chr4 32122769 32123040 -123507080 - MMERVK10C-int LTR ERVK -6629 952 729 1 830 2866 52 0 0 chr4 32123038 32123381 -123506739 - MMERVK10C-int LTR ERVK -7238 343 1 1 830 3330 48 0 130 chr4 32123381 32123882 -123506238 - RLTR10C LTR ERVK 0 436 1 1 830 270 0 0 0 chr4 32124851 32124881 -123505239 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 830 597 254 159 10 chr4 32125234 32125429 -123504691 + ID_B1 SINE B4 1 224 0 1 830 232 317 159 28 chr4 32126108 32126215 -123503905 + L2b LINE L2 3084 3204 -183 1 830 250 245 157 0 chr4 32126359 32126461 -123503659 - L1MB5 LINE L1 -178 5996 5879 1 830 228 281 47 37 chr4 32126461 32126568 -123503552 - RMER2 LTR ERV1 0 567 460 1 830 668 213 37 0 chr4 32127343 32127479 -123502641 + B1_Mur1 SINE Alu 1 141 -8 1 830 503 187 9 0 chr4 32127485 32127592 -123502528 + GA-rich Low_complexity Low_complexity 3 110 0 1 830 202 244 0 0 chr4 32127595 32127640 -123502480 + A-rich Low_complexity Low_complexity 1 45 0 1 830 923 211 54 0 chr4 32128211 32128415 -123501705 - B3 SINE B2 0 216 2 1 830 571 203 44 15 chr4 32129675 32129810 -123500310 + ID_B1 SINE B4 83 221 -3 1 830 300 274 57 0 chr4 32129916 32130022 -123500098 + L1MB2 LINE L1 5589 5700 -483 1 830 2196 125 6 8 chr4 32130176 32130531 -123499589 - ORR1B1 LTR MaLR 0 394 41 1 830 273 239 61 9 chr4 32130574 32130688 -123499432 + L1MB2 LINE L1 6035 6154 -17 1 830 407 255 29 0 chr4 32130706 32130808 -123499312 - PB1D9 SINE Alu -13 107 3 1 830 261 291 8 41 chr4 32131540 32131662 -123498458 + CT-rich Low_complexity Low_complexity 1 118 0 1 830 244 276 118 0 chr4 32131883 32131959 -123498161 + PB1D9 SINE Alu 1 85 -35 1 830 554 110 18 27 chr4 32131969 32132000 -123498120 + polypurine Low_complexity Low_complexity 4 34 0 1 830 1161 118 0 0 chr4 32132000 32132178 -123497942 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 830 554 110 18 27 chr4 32132178 32132258 -123497862 + polypurine Low_complexity Low_complexity 35 114 0 1 830 306 67 0 0 chr4 32132579 32132624 -123497496 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 1 830 189 231 154 0 chr4 32133276 32133328 -123496792 - MER5A DNA MER1_type -123 66 7 1 830 209 108 27 0 chr4 32133561 32133598 -123496522 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 1 830 2029 114 6 3 chr4 32133599 32133917 -123496203 - ORR1A2 LTR MaLR -8 319 1 1 830 497 298 95 46 chr4 32134000 32134306 -123495814 - MT2A LTR ERVL -144 389 69 1 830 1782 170 52 93 chr4 32134786 32135194 -123494926 - MTD LTR MaLR -11 408 18 1 830 258 22 20 61 chr4 32135195 32135244 -123494876 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 830 447 19 0 0 chr4 32135844 32135896 -123494224 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 830 270 0 0 0 chr4 32135920 32135950 -123494170 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 830 475 261 76 0 chr4 32135951 32136108 -123494012 - ID_B1 SINE B4 -54 170 2 1 830 279 0 0 0 chr4 32136114 32136145 -123493975 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 830 854 143 15 0 chr4 32136148 32136281 -123493839 - B1_Mur3 SINE Alu -13 136 2 1 830 264 30 0 0 chr4 32136625 32136658 -123493462 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 830 423 0 0 0 chr4 32136658 32136704 -123493416 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 830 1323 187 193 14 chr4 32137477 32137830 -123492290 - MTD LTR MaLR 0 419 4 2 830 489 192 129 15 chr4 32138377 32138509 -123491611 + MTD LTR MaLR 258 404 -15 2 830 2647 118 14 0 chr4 32139187 32139602 -123490518 - RLTR10C LTR ERVK -15 421 1 2 830 280 307 68 26 chr4 32140078 32140136 -123489984 - B4A SINE B4 -14 278 217 2 830 288 0 0 0 chr4 32140136 32140168 -123489952 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 830 398 257 414 36 chr4 32140168 32140326 -123489794 - B4A SINE B4 -76 216 1 2 830 328 239 49 41 chr4 32140326 32140444 -123489676 - B4A SINE B4 -65 227 109 2 830 393 117 0 0 chr4 32140496 32140556 -123489564 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 830 231 36 0 0 chr4 32140556 32140583 -123489537 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 830 264 171 364 0 chr4 32140587 32140675 -123489445 - RSINE1 SINE B4 -43 122 3 2 830 6394 78 26 3 chr4 32140974 32141828 -123488292 - Lx3_Mus LINE L1 0 7009 6137 2 830 515 300 15 91 chr4 32142696 32142894 -123487226 - B3A SINE B2 -8 190 8 2 830 282 158 0 62 chr4 32143870 32143951 -123486169 + C-rich Low_complexity Low_complexity 4 79 0 2 830 464 243 96 0 chr4 32143956 32144092 -123486028 - ID_B1 SINE B4 -75 149 1 2 830 217 183 16 48 chr4 32144093 32144156 -123485964 + T-rich Low_complexity Low_complexity 4 64 0 2 830 329 338 7 0 chr4 32144281 32144423 -123485697 + (TG)n Simple_repeat Simple_repeat 1 143 0 2 830 1343 73 44 6 chr4 32144492 32144644 -123485476 + B2_Mm2 SINE B2 5 157 -38 2 830 189 0 0 0 chr4 32144644 32144665 -123485455 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 830 1343 73 44 6 chr4 32144665 32144692 -123485428 + B2_Mm2 SINE B2 158 191 -4 2 830 356 291 79 11 chr4 32144875 32145052 -123485068 + MLT1D LTR MaLR 309 497 -8 2 830 234 0 0 0 chr4 32145756 32145782 -123484338 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2 830 414 276 32 0 chr4 32145783 32145906 -123484214 - B1F2 SINE Alu -22 127 1 2 830 225 208 0 20 chr4 32146690 32146739 -123483381 - ID4 SINE ID -2 81 34 2 830 481 347 22 13 chr4 32147512 32147737 -123482383 + MLT1C LTR MaLR 216 442 -25 2 830 274 238 138 37 chr4 32147870 32147979 -123482141 + L1ME4a LINE L1 5956 6075 -49 2 830 396 103 0 0 chr4 32148092 32148150 -123481970 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 830 210 154 26 0 chr4 32148590 32148629 -123481491 + G-rich Low_complexity Low_complexity 1 40 0 2 830 762 207 14 0 chr4 32149056 32149196 -123480924 + B1_Mur2 SINE Alu 2 143 -6 2 830 681 193 18 14 chr4 32149844 32150356 -123479764 + (TG)n Simple_repeat Simple_repeat 1 513 0 2 830 991 300 104 27 chr4 32150910 32151676 -123478444 + L1_Rod LINE L1 1108 1937 -3910 2 830 1052 327 87 79 chr4 32151674 32152481 -123477639 + Lx8 LINE L1 5880 6692 -781 2 830 405 229 11 0 chr4 32152478 32152591 -123477529 - Lx6 LINE L1 -1743 5953 5838 2 830 1852 291 63 38 chr4 32152604 32153315 -123476805 + Lx8 LINE L1 6723 7451 -22 2 830 928 291 167 24 chr4 32153341 32154104 -123476016 + Lx8 LINE L1 2572 3461 -2419 2 830 577 239 14 0 chr4 32154127 32154265 -123475855 + B3A SINE B2 10 149 -49 2 830 462 125 0 0 chr4 32154265 32154345 -123475775 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 830 3995 279 82 38 chr4 32154400 32155220 -123474900 + Lx8 LINE L1 3465 4316 -1564 2 830 720 64 0 0 chr4 32155220 32155314 -123474806 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 830 3995 279 82 38 chr4 32155314 32155325 -123474795 + Lx8 LINE L1 4317 4328 -1552 2 830 363 23 0 0 chr4 32155325 32155369 -123474751 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 830 297 0 0 0 chr4 32155369 32155401 -123474719 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 830 3995 279 82 38 chr4 32155401 32155433 -123474687 + Lx8 LINE L1 4329 4372 -1508 2 830 922 180 214 0 chr4 32155433 32155611 -123474509 + B3 SINE B2 1 216 0 2 830 3995 279 82 38 chr4 32155611 32156629 -123473491 + Lx8 LINE L1 4373 5435 -445 2 830 2285 76 30 54 chr4 32156629 32156964 -123473156 - ORR1A2 LTR MaLR 0 327 1 2 830 3995 279 82 38 chr4 32156964 32156986 -123473134 + Lx8 LINE L1 5436 5454 -426 2 830 758 221 127 0 chr4 32156986 32157167 -123472953 + B3 SINE B2 2 205 -11 2 830 518 276 67 107 chr4 32157167 32157291 -123472829 + L1M2 LINE L1 5487 5588 -709 2 830 4070 140 48 56 chr4 32157293 32157413 -123472707 + RLTR25B LTR ERVK 3 138 -890 2 830 495 0 0 0 chr4 32157413 32157468 -123472652 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 830 582 15 0 0 chr4 32157468 32157534 -123472586 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 830 4070 140 48 56 chr4 32157534 32158201 -123471919 + RLTR25B LTR ERVK 139 784 -244 2 830 602 165 139 0 chr4 32158182 32158297 -123471823 + RLTR25B LTR ERVK 898 1028 0 2 830 273 29 0 0 chr4 32158299 32158333 -123471787 + (T)n Simple_repeat Simple_repeat 1 34 0 2 830 1252 27 0 7 chr4 32158333 32158481 -123471639 - B1_Mus2 SINE Alu 0 147 1 2 830 3996 272 132 17 chr4 32158484 32159980 -123470140 + Lx8 LINE L1 5547 7217 -256 2 830 24 0 0 0 chr4 32160101 32160125 -123469995 + AT_rich Low_complexity Low_complexity 1 24 0 2 830 1383 72 28 0 chr4 32160231 32160411 -123469709 + B2_Mm2 SINE B2 2 186 -9 2 830 384 299 50 38 chr4 32160435 32160595 -123469525 - RSINE1 SINE B4 0 165 4 2 830 562 278 133 55 chr4 32160600 32161132 -123468988 + L1MB8 LINE L1 5594 6167 -11 2 830 910 206 58 19 chr4 32161382 32161590 -123468530 - B3 SINE B2 0 216 1 2 830 275 267 84 25 chr4 32162413 32162532 -123467588 - MER2 DNA MER2_type -199 146 21 2 830 567 0 0 0 chr4 32162991 32163054 -123467066 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 830 328 261 65 0 chr4 32164271 32164363 -123465757 - RSINE1 SINE B4 -30 135 38 2 830 368 340 80 27 chr4 32164854 32165117 -123465003 - B4A SINE B4 -14 278 2 2 830 297 0 0 0 chr4 32166774 32166807 -123463313 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 830 423 331 16 0 chr4 32166910 32167034 -123463086 - B4A SINE B4 -166 126 1 2 830 540 189 5 10 chr4 32167049 32167166 -123462954 - B1_Mur3 SINE Alu 0 120 1 2 830 1254 265 77 46 chr4 32167172 32167694 -123462426 - Lx9 LINE L1 -8 7636 7099 2 830 785 242 60 0 chr4 32167702 32167884 -123462236 - B3 SINE B2 -22 194 2 2 830 335 247 0 0 chr4 32168159 32168236 -123461884 - B3 SINE B2 -139 77 1 2 830 507 318 160 4 chr4 32168262 32168559 -123461561 + L1MC4 LINE L1 7082 7444 -598 2 830 185 94 31 0 chr4 32168563 32168595 -123461525 + (CAAAG)n Simple_repeat Simple_repeat 1 33 0 2 830 1085 80 0 0 chr4 32168650 32168787 -123461333 + B1_Mus1 SINE Alu 2 138 -10 2 830 213 0 81 0 chr4 32168787 32168824 -123461296 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 830 979 234 14 5 chr4 32168830 32169040 -123461080 + B3 SINE B2 1 212 -4 2 830 504 269 61 51 chr4 32169068 32169264 -123460856 + L1MC4 LINE L1 7478 7675 -367 2 830 300 289 77 11 chr4 32169423 32169532 -123460588 + B1_Mm SINE Alu 3 119 -1 2 830 636 14 0 0 chr4 32169617 32169690 -123460430 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 830 1022 175 29 111 chr4 32171679 32171923 -123458197 - URR1B DNA MER1_type 0 225 2 2 830 1746 225 59 8 chr4 32172283 32172672 -123457448 + MTD LTR MaLR 8 416 -3 2 830 396 215 10 70 chr4 32173967 32174008 -123456112 + B2_Mm2 SINE B2 2 38 -157 2 830 2372 80 3 60 chr4 32174008 32174355 -123455765 + ORR1A2 LTR MaLR 1 327 0 2 830 396 215 10 70 chr4 32174355 32174413 -123455707 + B2_Mm2 SINE B2 39 95 -100 2 830 633 223 5 0 chr4 32174426 32174638 -123455482 + GA-rich Low_complexity Low_complexity 1 213 0 2 830 28 0 0 0 chr4 32174868 32174896 -123455224 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 1366 187 33 11 chr4 32175385 32175661 -123454459 - MTD LTR MaLR -128 291 10 2 830 1324 79 25 40 chr4 32175783 32175981 -123454139 - B2_Mm2 SINE B2 0 195 1 2 830 1249 99 33 0 chr4 32176444 32176467 -123453653 - B2_Mm1a SINE B2 -4 189 162 2 830 567 0 0 0 chr4 32176467 32176530 -123453590 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 2 830 1249 99 33 0 chr4 32176530 32176688 -123453432 - B2_Mm1a SINE B2 -32 161 3 2 830 1009 126 11 0 chr4 32176821 32176996 -123453124 + (TTC)n Simple_repeat Simple_repeat 2 178 0 2 830 410 230 13 13 chr4 32176998 32177148 -123452972 + CT-rich Low_complexity Low_complexity 3 152 0 2 830 567 267 30 0 chr4 32177149 32177284 -123452836 - ID_B1 SINE B4 -2 222 84 2 830 1099 244 102 10 chr4 32178134 32178428 -123451692 + MTD LTR MaLR 3 323 -96 2 830 892 238 142 30 chr4 32179345 32179613 -123450507 + RMER1B Other Other 65 362 -704 2 830 2749 206 127 33 chr4 32179613 32180524 -123449596 + RMER1B Other Other 48 918 -148 2 830 435 38 0 0 chr4 32180524 32180577 -123449543 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 2 830 2749 179 159 10 chr4 32180577 32180661 -123449459 + RMER1B Other Other 919 1041 -25 2 830 1171 62 0 0 chr4 32180661 32180807 -123449313 + B1_Mus2 SINE Alu 1 146 -1 2 830 207 0 0 0 chr4 32180936 32180959 -123449161 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 830 22 35 0 0 chr4 32180962 32180991 -123449129 + AT_rich Low_complexity Low_complexity 1 29 0 2 830 1039 235 67 16 chr4 32181132 32181387 -123448733 - Lx6 LINE L1 -14 7446 7179 2 830 2388 226 45 65 chr4 32181399 32182547 -123447573 - L1_Mur3 LINE L1 -4185 1695 575 2 830 1229 20 0 20 chr4 32183055 32183204 -123446916 + B1_Mus1 SINE Alu 2 147 -1 2 830 604 86 8 33 chr4 32183253 32183373 -123446747 - RMER17B LTR ERVK -495 463 347 2 830 480 35 0 0 chr4 32183431 32183489 -123446631 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2 830 1158 58 0 0 chr4 32183493 32183647 -123446473 - B2_Mm2 SINE B2 -41 154 1 2 830 879 166 28 0 chr4 32184042 32184187 -123445933 - B1_Mur4 SINE Alu 0 150 2 2 830 29 78 0 0 chr4 32184306 32184370 -123445750 + AT_rich Low_complexity Low_complexity 1 64 0 2 830 33 0 0 0 chr4 32184409 32184442 -123445678 + AT_rich Low_complexity Low_complexity 1 33 0 2 830 25 31 0 0 chr4 32184634 32184666 -123445454 + AT_rich Low_complexity Low_complexity 1 32 0 2 830 779 84 0 0 chr4 32184675 32184782 -123445338 - B1_Mus2 SINE Alu -39 108 2 2 830 23 54 0 0 chr4 32184881 32184918 -123445202 + AT_rich Low_complexity Low_complexity 1 37 0 2 830 23 0 0 0 chr4 32184985 32185008 -123445112 + AT_rich Low_complexity Low_complexity 1 23 0 3 830 1022 208 0 31 chr4 32186362 32186585 -123443535 + MTD LTR MaLR 1 216 -203 3 830 232 294 74 81 chr4 32187027 32187175 -123442945 + MER5A1 DNA MER1_type 20 166 0 3 830 518 241 182 18 chr4 32188011 32188304 -123441816 + L1MB3 LINE L1 5802 6142 -41 3 830 525 189 41 8 chr4 32188305 32188428 -123441692 + B3A SINE B2 3 129 -69 3 830 441 0 0 0 chr4 32188448 32188497 -123441623 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 830 820 269 109 63 chr4 32188780 32188926 -123441194 + Lx7 LINE L1 7199 7363 -333 3 830 212 0 36 0 chr4 32188926 32188954 -123441166 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 830 820 269 109 63 chr4 32188954 32189003 -123441117 + Lx7 LINE L1 7364 7411 -285 3 830 243 0 0 0 chr4 32189003 32189030 -123441090 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 830 820 269 109 63 chr4 32189030 32189076 -123441044 + Lx7 LINE L1 7412 7458 -238 3 830 396 0 0 0 chr4 32189076 32189120 -123441000 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 830 820 269 109 63 chr4 32189120 32189333 -123440787 + Lx7 LINE L1 7459 7676 -20 3 830 23 0 0 0 chr4 32189337 32189360 -123440760 + AT_rich Low_complexity Low_complexity 1 23 0 3 830 425 142 8 74 chr4 32189360 32189482 -123440638 + Lx9 LINE L1 7530 7643 -1 3 830 796 267 93 74 chr4 32189689 32190013 -123440107 - MTEa LTR MaLR -44 335 6 3 830 656 217 86 73 chr4 32190019 32190253 -123439867 - MTEa-int LTR MaLR 0 1580 1344 3 830 615 306 76 18 chr4 32190275 32190551 -123439569 + B4A SINE B4 1 292 0 3 830 641 213 6 0 chr4 32190559 32190733 -123439387 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 830 4367 254 90 29 chr4 32190739 32191557 -123438563 - MTEa-int LTR MaLR -217 1363 454 3 830 369 0 0 0 chr4 32191557 32191598 -123438522 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 830 4367 254 90 29 chr4 32191598 32192055 -123438065 - MTEa-int LTR MaLR -1127 453 10 3 830 211 176 0 73 chr4 32192055 32192071 -123438049 + (TATATG)n Simple_repeat Simple_repeat 3 16 0 3 830 249 128 0 0 chr4 32192071 32192118 -123438002 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 3 830 211 176 0 73 chr4 32192118 32192156 -123437964 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 3 830 1340 247 50 36 chr4 32192156 32192359 -123437761 - MTE2b LTR MaLR -13 406 160 3 830 2232 144 35 13 chr4 32192359 32192733 -123437387 + RLTR14 LTR ERV1 1 382 0 3 830 1340 233 40 31 chr4 32192733 32192889 -123437231 - MTE2b LTR MaLR -220 159 3 3 830 9377 249 65 17 chr4 32194259 32196982 -123433138 + L1_Mur3 LINE L1 2938 5791 -89 3 830 6631 156 80 16 chr4 32197068 32197624 -123432496 + Lx7 LINE L1 675 1271 -6457 3 830 3031 152 17 30 chr4 32197624 32198159 -123431961 + RLTR12B LTR ERVK 1 528 0 3 830 6631 161 44 34 chr4 32198159 32199457 -123430663 + Lx7 LINE L1 1272 2588 -3292 3 830 5603 205 66 121 chr4 32199455 32200245 -123429875 + Lx7 LINE L1 3814 4624 -1256 3 830 399 17 50 0 chr4 32200245 32200305 -123429815 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 830 5603 205 66 121 chr4 32200305 32201570 -123428550 + Lx7 LINE L1 4625 5754 -126 3 830 6226 191 43 43 chr4 32201573 32202862 -123427258 + Lx7 LINE L1 6041 7329 -367 3 830 2569 143 209 0 chr4 32202862 32203364 -123426756 + RMER20B LTR ERVK 1 607 -20 3 830 282 172 54 101 chr4 32203431 32203560 -123426560 + Lx7 LINE L1 7400 7522 -174 3 830 2402 149 140 48 chr4 32203560 32203637 -123426483 + RLTR20D LTR ERVK 1 76 -492 3 830 1646 21 16 0 chr4 32203637 32203826 -123426294 - B2_Mm1t SINE B2 0 193 2 3 830 2402 149 140 48 chr4 32203826 32204175 -123425945 + RLTR20D LTR ERVK 77 463 -105 3 830 603 0 0 0 chr4 32204175 32204242 -123425878 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 830 2402 149 140 48 chr4 32204242 32204334 -123425786 + RLTR20D LTR ERVK 464 567 -1 3 830 235 152 22 0 chr4 32204334 32204380 -123425740 + T-rich Low_complexity Low_complexity 2 48 0 3 830 756 112 72 0 chr4 32204389 32204514 -123425606 - B1_Mur3 SINE Alu -7 142 9 3 830 828 158 38 0 chr4 32204522 32204680 -123425440 + Lx7 LINE L1 7533 7696 0 3 830 3812 168 58 55 chr4 32204715 32205553 -123424567 + MTC-int LTR MaLR 24 864 -394 3 830 858 218 27 90 chr4 32205575 32205797 -123424323 + B3 SINE B2 1 208 -8 3 830 540 315 58 12 chr4 32205822 32206063 -123424057 + L1MB2 LINE L1 5694 5945 -226 3 830 432 0 0 0 chr4 32206198 32206246 -123423874 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 830 333 0 0 0 chr4 32206246 32206283 -123423837 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 830 735 116 0 0 chr4 32206299 32206411 -123423709 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 3 830 406 340 20 35 chr4 32206419 32206620 -123423500 + MER58A DNA MER1_type 26 223 -1 3 830 333 93 0 0 chr4 32206804 32206858 -123423262 + (TAGG)n Simple_repeat Simple_repeat 1 54 0 3 830 1035 66 0 0 chr4 32206869 32207005 -123423115 + (GAAA)n Simple_repeat Simple_repeat 3 138 0 3 830 194 33 0 62 chr4 32207005 32207037 -123423083 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 3 830 1041 89 0 0 chr4 32207037 32207183 -123422937 + (GAAA)n Simple_repeat Simple_repeat 4 149 0 3 830 1000 72 65 0 chr4 32207731 32207869 -123422251 + B1_Mus2 SINE Alu 1 147 0 3 830 240 197 328 0 chr4 32208147 32208208 -123421912 + PB1D10 SINE Alu 7 87 -30 3 830 1131 198 34 48 chr4 32208244 32208536 -123421584 + RMER5 LTR ERV1 1 288 -246 3 830 3114 150 49 4 chr4 32208536 32209040 -123421080 + RMER1A Other Other 348 875 -155 3 830 189 0 0 0 chr4 32209040 32209061 -123421059 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 830 3114 220 87 1862 chr4 32209061 32209160 -123420960 + RMER1A Other Other 876 1064 -2 3 830 2414 142 18 3 chr4 32209158 32209538 -123420582 + Lx6 LINE L1 5318 5703 -177 3 830 744 193 167 5 chr4 32209546 32209744 -123420376 + RMER13B LTR ERVK 679 908 0 3 830 1030 273 87 12 chr4 32209744 32210067 -123420053 + Lx6 LINE L1 5926 6272 -1188 3 830 2836 227 125 11 chr4 32210068 32210868 -123419252 + Lx6 LINE L1 6529 7460 0 3 830 985 243 5 5 chr4 32210910 32211125 -123418995 + B3 SINE B2 2 216 0 3 830 1064 66 7 0 chr4 32211328 32211464 -123418656 + B1_Mus2 SINE Alu 1 137 -10 3 830 729 0 0 0 chr4 32211483 32211564 -123418556 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 3 830 8155 61 6 5 chr4 32211564 32213114 -123417006 + L1_Mus1 LINE L1 5017 6565 -2 3 830 260 373 67 21 chr4 32213231 32213516 -123416604 - L2 LINE L2 -823 2596 2299 3 830 1070 226 132 8 chr4 32213567 32213903 -123416217 - MTD LTR MaLR -11 408 3 3 830 592 192 15 15 chr4 32214702 32214834 -123415286 - ID_B1 SINE B4 -9 215 84 3 830 6655 218 41 76 chr4 32214840 32215252 -123414868 + Lx6 LINE L1 5845 6175 -1285 3 830 357 24 0 0 chr4 32215252 32215294 -123414826 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 830 6655 218 41 76 chr4 32215294 32216552 -123413568 + Lx6 LINE L1 6176 7456 -4 3 830 314 316 72 60 chr4 32216583 32216832 -123413288 - L1ME1 LINE L1 -13 6166 5915 3 830 540 0 0 0 chr4 32216847 32216907 -123413213 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 830 204 40 0 0 chr4 32218372 32218397 -123411723 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 830 1665 36 0 0 chr4 32219107 32219299 -123410821 - B2_Mm1a SINE B2 0 193 2 3 830 928 99 6 26 chr4 32219674 32219830 -123410290 - L1Md_F2 LINE L1 0 6582 6430 3 830 707 221 132 6 chr4 32220819 32221001 -123409119 + ID_B1 SINE B4 3 207 -17 3 830 225 196 0 0 chr4 32221007 32221063 -123409057 + GA-rich Low_complexity Low_complexity 3 58 0 3 830 228 67 0 0 chr4 32221135 32221165 -123408955 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 830 798 296 0 19 chr4 32221165 32221375 -123408745 - MTEa LTR MaLR -170 209 4 3 830 22 0 0 0 chr4 32221448 32221470 -123408650 + AT_rich Low_complexity Low_complexity 1 22 0 3 830 1222 191 183 32 chr4 32222377 32222841 -123407279 - RMER5 LTR ERV1 0 534 1 3 830 370 255 41 31 chr4 32222954 32223051 -123407069 + PB1D10 SINE Alu 20 117 0 3 830 216 93 22 44 chr4 32223355 32223400 -123406720 + (TTAGGG)n Simple_repeat Simple_repeat 3 46 0 3 830 1836 28 0 5 chr4 32223534 32223753 -123406367 - L1Md_F2 LINE L1 -8 6574 6357 3 830 22 0 0 0 chr4 32224001 32224023 -123406097 + AT_rich Low_complexity Low_complexity 1 22 0 3 830 236 224 117 13 chr4 32224023 32224100 -123406020 - Lx8 LINE L1 -2 7471 7387 3 830 266 354 82 116 chr4 32224138 32224371 -123405749 - MIR SINE MIR -25 237 13 3 830 226 247 104 0 chr4 32224410 32224487 -123405633 + B1F SINE Alu 2 86 -63 3 830 241 236 0 14 chr4 32224728 32224801 -123405319 + CT-rich Low_complexity Low_complexity 1 72 0 3 830 765 144 0 0 chr4 32224803 32224977 -123405143 + (TC)n Simple_repeat Simple_repeat 2 175 0 3 830 1542 234 64 8 chr4 32226188 32226580 -123403540 + MTD LTR MaLR 5 418 -1 3 830 203 146 24 0 chr4 32226581 32226622 -123403498 + CT-rich Low_complexity Low_complexity 2 43 0 3 830 281 26 26 0 chr4 32227893 32227931 -123402189 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 3 830 430 313 138 40 chr4 32228127 32228380 -123401740 + MLT1K LTR MaLR 311 588 -7 3 830 25 0 0 0 chr4 32229892 32229917 -123400203 + AT_rich Low_complexity Low_complexity 1 25 0 3 830 202 268 202 20 chr4 32229975 32230074 -123400046 + MIRb SINE MIR 143 259 -9 3 830 188 335 69 50 chr4 32230134 32230411 -123399709 - L2b LINE L2 -103 3272 2991 3 830 585 0 0 0 chr4 32230670 32230735 -123399385 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 830 333 0 0 0 chr4 32230735 32230771 -123399349 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 830 267 31 0 0 chr4 32232049 32232081 -123398039 + (CAT)n Simple_repeat Simple_repeat 1 32 0 3 830 26 30 0 0 chr4 32232200 32232233 -123397887 + AT_rich Low_complexity Low_complexity 1 33 0 3 830 2667 130 29 17 chr4 32232296 32232712 -123397408 + MTC LTR MaLR 1 421 0 3 830 1158 102 0 0 chr4 32232727 32232953 -123397167 + (TTC)n Simple_repeat Simple_repeat 1 226 0 3 830 776 336 36 42 chr4 32232961 32233346 -123396774 - Lx7 LINE L1 -887 6809 6427 3 830 25 0 0 0 chr4 32233421 32233446 -123396674 + AT_rich Low_complexity Low_complexity 1 25 0 3 830 279 270 133 16 chr4 32233753 32233881 -123396239 - MIR SINE MIR -79 183 41 3 830 456 227 158 50 chr4 32234031 32234170 -123395950 + RSINE1 SINE B4 8 161 -4 3 830 209 218 0 52 chr4 32235602 32235660 -123394460 + GA-rich Low_complexity Low_complexity 4 58 0 3 830 203 266 58 81 chr4 32236591 32236677 -123393443 - L2b LINE L2 -17 3358 3275 3 830 384 77 0 0 chr4 32237244 32237296 -123392824 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 3 830 924 256 129 52 chr4 32237298 32237702 -123392418 + RMER10A LTR ERVL 1 435 -7 3 830 293 272 224 0 chr4 32240702 32240827 -123389293 - MIRb SINE MIR -39 229 77 3 830 3031 201 196 60 chr4 32241424 32242220 -123387900 + RMER13B LTR ERVK 5 908 0 4 830 243 294 44 82 chr4 32242318 32242477 -123387643 + YREP_Mm Unknown Unknown 155 307 -1505 4 830 842 131 14 21 chr4 32242342 32242483 -123387637 - B1_Mur3 SINE Alu -4 145 6 4 831 465 19 0 0 chr4 32244719 32244773 -123385347 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 831 251 28 0 27 chr4 32244995 32245032 -123385088 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 831 298 306 17 61 chr4 32245097 32245212 -123384908 + PB1D10 SINE Alu 2 111 -6 4 831 225 338 0 0 chr4 32245294 32245362 -123384758 - B4 SINE B4 -208 84 17 4 831 389 221 0 0 chr4 32245768 32245836 -123384284 + ID4 SINE ID 4 71 -12 4 831 217 269 0 0 chr4 32245839 32245891 -123384229 + G-rich Low_complexity Low_complexity 1 52 0 4 831 2768 168 228 19 chr4 32246362 32246980 -123383140 - Lx2B LINE L1 0 7000 6254 4 831 2334 82 31 9 chr4 32247680 32247999 -123382121 - ORR1A3 LTR MaLR 0 326 1 4 831 475 221 57 9 chr4 32248351 32248456 -123381664 - PB1D9 SINE Alu -5 115 6 4 831 254 326 23 0 chr4 32248379 32248465 -123381655 - B4A SINE B4 -123 169 82 4 831 443 176 11 0 chr4 32250200 32250291 -123379829 + (CAT)n Simple_repeat Simple_repeat 1 92 0 4 831 253 325 100 0 chr4 32250307 32250387 -123379733 - MIR SINE MIR -127 135 48 4 831 804 217 160 34 chr4 32251010 32251272 -123378848 - ORR1E LTR MaLR -64 295 1 4 831 196 312 57 25 chr4 32251933 32252054 -123378066 - MIRm SINE MIR -109 167 38 4 831 899 50 17 0 chr4 32252590 32252710 -123377410 + (TTTCC)n Simple_repeat Simple_repeat 3 124 0 4 831 348 206 294 0 chr4 32253639 32253731 -123376389 - B3 SINE B2 -97 119 1 4 831 226 209 212 71 chr4 32253763 32253876 -123376244 - MER5A1 DNA MER1_type -35 131 3 4 831 222 357 0 28 chr4 32254015 32254087 -123376033 - B1F SINE Alu -79 70 1 4 831 344 259 139 8 chr4 32254293 32254414 -123375706 - L1ME1 LINE L1 -41 6138 5998 4 831 354 302 28 28 chr4 32254811 32254954 -123375166 - L1ME1 LINE L1 -571 5608 5466 4 831 315 0 0 0 chr4 32254961 32254996 -123375124 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 831 473 297 35 0 chr4 32255229 32255374 -123374746 + RSINE1 SINE B4 1 150 -15 4 831 243 0 0 0 chr4 32256365 32256392 -123373728 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 831 270 81 0 0 chr4 32256780 32256817 -123373303 + (A)n Simple_repeat Simple_repeat 1 37 0 4 831 183 42 0 0 chr4 32257554 32257578 -123372542 + (CCCCCT)n Simple_repeat Simple_repeat 6 29 0 4 831 230 282 12 25 chr4 32257955 32258035 -123372085 - LTR28 LTR ERV1 -538 482 404 4 831 182 279 0 0 chr4 32258066 32258109 -123372011 + MIR SINE MIR 104 146 -116 4 831 2109 214 38 24 chr4 32258531 32259084 -123371036 - Lx6 LINE L1 -3 7457 6506 4 831 28 0 0 0 chr4 32259104 32259132 -123370988 + AT_rich Low_complexity Low_complexity 1 28 0 4 831 822 276 169 33 chr4 32259359 32259749 -123370371 + Lx9 LINE L1 7058 7503 -141 4 831 2153 167 65 20 chr4 32259749 32260152 -123369968 + MTC LTR MaLR 1 421 0 4 831 822 276 169 33 chr4 32260152 32260252 -123369868 + Lx9 LINE L1 7504 7614 -30 4 831 308 257 43 0 chr4 32260469 32260539 -123369581 - MTEa LTR MaLR -14 365 293 4 831 590 226 35 28 chr4 32260919 32261060 -123369060 - B3 SINE B2 -1 215 74 4 831 383 0 21 0 chr4 32263232 32263279 -123366841 + (TGG)n Simple_repeat Simple_repeat 3 50 0 4 831 306 50 0 0 chr4 32263279 32263319 -123366801 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 831 339 320 41 0 chr4 32263779 32263876 -123366244 + MIRc SINE MIR 43 143 -125 4 831 185 351 0 0 chr4 32263876 32263933 -123366187 + L3 LINE CR1 4427 4483 -6 4 831 561 156 0 53 chr4 32264317 32264507 -123365613 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 831 380 216 11 38 chr4 32264465 32264648 -123365472 + (CATA)n Simple_repeat Simple_repeat 1 178 0 4 831 566 149 0 70 chr4 32264663 32264962 -123365158 + (CA)n Simple_repeat Simple_repeat 1 278 0 4 831 670 309 57 53 chr4 32265685 32266078 -123364042 + MLT1C LTR MaLR 1 390 0 4 831 505 323 24 36 chr4 32266129 32266296 -123363824 + RSINE1 SINE B4 1 165 0 4 831 954 31 18 58 chr4 32266380 32266660 -123363460 + (CA)n Simple_repeat Simple_repeat 1 268 0 4 831 600 195 0 0 chr4 32267541 32267764 -123362356 + (TG)n Simple_repeat Simple_repeat 1 223 0 4 831 240 226 0 0 chr4 32267793 32267886 -123362234 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 831 309 154 19 0 chr4 32267891 32267943 -123362177 - HAL1-3A_ME LINE L1 -831 2027 1975 4 831 232 289 0 0 chr4 32267967 32268019 -123362101 - B4 SINE B4 -4 288 237 4 831 1046 257 132 16 chr4 32268024 32268338 -123361782 - ORR1E LTR MaLR -6 353 1 4 831 286 151 52 0 chr4 32268340 32268409 -123361711 - B4A SINE B4 -55 237 167 4 831 2584 152 126 2 chr4 32268410 32268878 -123361242 - RMER15 LTR ERVL 0 575 50 4 831 252 306 13 40 chr4 32268863 32268938 -123361182 - B4A SINE B4 -113 179 107 4 831 382 206 93 52 chr4 32268960 32269057 -123361063 - PB1D9 SINE Alu 0 120 20 4 831 678 216 52 0 chr4 32269065 32269218 -123360902 - MT2A LTR ERVL -370 163 3 4 831 1169 308 15 48 chr4 32269439 32269838 -123360282 + MT2A LTR ERVL 148 533 0 4 831 614 256 155 0 chr4 32270410 32270617 -123359503 + L1MA9 LINE L1 4661 4899 -1241 4 831 1356 236 104 61 chr4 32270736 32271577 -123358543 + L1MA9 LINE L1 4893 5785 -527 4 831 797 294 99 43 chr4 32271707 32272151 -123357969 + L1MA9 LINE L1 5798 6266 -25 4 831 281 294 36 18 chr4 32272180 32272291 -123357829 + MIR SINE MIR 71 183 -79 4 831 349 286 25 39 chr4 32272471 32272649 -123357471 - L1MC3 LINE L1 -1198 6684 6526 4 831 743 161 11 0 chr4 32272708 32272882 -123357238 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 4 831 525 183 39 0 chr4 32274558 32274662 -123355458 - PB1 SINE Alu -6 121 14 4 831 746 229 66 52 chr4 32275394 32275606 -123354514 + ID_B1 SINE B4 1 215 -9 4 831 510 16 0 0 chr4 32276899 32276953 -123353167 + (TTC)n Simple_repeat Simple_repeat 1 54 0 4 831 1476 34 0 0 chr4 32276953 32277131 -123352989 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 831 510 16 0 0 chr4 32277131 32277137 -123352983 + (TTC)n Simple_repeat Simple_repeat 1 6 0 4 831 307 370 68 0 chr4 32277137 32277283 -123352837 - HAL1-3A_ME LINE L1 -419 2439 2284 4 831 2311 124 55 26 chr4 32277800 32278180 -123351940 - Lx2 LINE L1 0 6997 6607 4 831 268 250 75 54 chr4 32278292 32278385 -123351735 - MIRc SINE MIR -81 187 93 4 831 315 0 0 0 chr4 32279206 32279241 -123350879 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 831 271 296 80 15 chr4 32279507 32279644 -123350476 - L1M5 LINE L1 -237 5887 5742 4 831 841 161 0 35 chr4 32280046 32280188 -123349932 - B1_Mur2 SINE Alu 0 149 13 4 831 298 289 0 136 chr4 32280075 32280207 -123349913 - MT2B LTR ERVL -330 271 158 4 831 368 289 32 16 chr4 32280226 32280349 -123349771 - L1ME1 LINE L1 -290 5889 5765 4 831 4102 53 12 0 chr4 32280598 32281105 -123349015 + L1Md_F3 LINE L1 6072 6584 0 4 831 487 220 59 20 chr4 32281119 32281221 -123348899 + B3A SINE B2 1 106 -92 4 831 216 0 0 0 chr4 32281227 32281251 -123348869 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 831 414 0 0 0 chr4 32281468 32281514 -123348606 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 831 200 35 35 0 chr4 32281514 32281542 -123348578 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 831 682 278 23 0 chr4 32282495 32282668 -123347452 - B3 SINE B2 -19 197 21 4 831 232 158 17 17 chr4 32283140 32283198 -123346922 + GA-rich Low_complexity Low_complexity 2 59 0 4 831 390 21 0 0 chr4 32283204 32283251 -123346869 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 831 298 351 96 18 chr4 32283431 32283712 -123346408 + L3b LINE CR1 50 352 -130 4 831 597 235 112 27 chr4 32284618 32284806 -123345314 - B3 SINE B2 -11 205 2 4 831 439 266 60 147 chr4 32285414 32285829 -123344291 + L1MB4 LINE L1 5796 6174 -6 4 831 198 0 0 0 chr4 32287258 32287280 -123342840 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 831 1189 265 54 27 chr4 32289006 32289374 -123340746 - MTE2a LTR MaLR 0 379 2 4 831 1147 44 0 0 chr4 32289796 32289931 -123340189 - B1_Mus1 SINE Alu -13 135 1 4 831 202 272 12 12 chr4 32290011 32290093 -123340027 + (CAGA)n Simple_repeat Simple_repeat 3 84 0 4 831 218 57 0 54 chr4 32290098 32290135 -123339985 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 4 831 1010 300 39 8 chr4 32290150 32290518 -123339602 - MLT2B2 LTR ERVL -72 495 20 4 831 2580 258 104 37 chr4 32290531 32291527 -123338593 - ERVL-int LTR ERVL -5 5752 4690 4 831 546 342 44 13 chr4 32291523 32291748 -123338372 - ERVL-int LTR ERVL -1025 4736 4505 4 831 1041 292 49 34 chr4 32291743 32292190 -123337930 - ERVL-B4-int LTR ERVL -5006 708 255 4 831 268 288 30 0 chr4 32292195 32292261 -123337859 + MTE2b LTR MaLR 8 75 -304 4 831 258 132 0 0 chr4 32292262 32292315 -123337805 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 4 831 408 288 0 9 chr4 32292315 32292427 -123337693 + MTE2b LTR MaLR 66 176 -203 4 831 333 255 40 20 chr4 32292690 32292790 -123337330 + PB1D7 SINE Alu 18 119 -1 4 831 433 239 0 88 chr4 32293025 32293172 -123336948 - ERVL-B4-int LTR ERVL -5577 137 4 4 831 564 210 0 0 chr4 32293210 32293377 -123336743 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 831 312 202 12 71 chr4 32293394 32293479 -123336641 - HAL1-3A_ME LINE L1 -804 2054 1975 4 831 333 164 0 0 chr4 32293489 32293562 -123336558 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 831 180 77 0 0 chr4 32293601 32293627 -123336493 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 831 677 319 101 15 chr4 32293628 32293895 -123336225 - MLT2B1 LTR ERVL -224 296 7 4 831 258 182 0 0 chr4 32295212 32295278 -123334842 + (CAA)n Simple_repeat Simple_repeat 3 68 0 4 831 932 212 10 43 chr4 32298471 32298678 -123331442 + MER115 DNA Tip100 484 683 -10 4 831 270 214 29 84 chr4 32300361 32300459 -123329661 + MTEb LTR MaLR 268 370 -9 4 831 7970 72 3 15 chr4 32300459 32301746 -123328374 + L1_Mus1 LINE L1 5318 6654 0 4 831 848 300 98 61 chr4 32301850 32302105 -123328015 + MLT2B4 LTR ERVL 1 268 -288 5 831 200 59 29 0 chr4 32302105 32302139 -123327981 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 831 848 318 114 70 chr4 32302139 32302358 -123327762 + MLT2B4 LTR ERVL 269 520 0 5 831 276 319 131 31 chr4 32302358 32302549 -123327571 + L1MC4a LINE L1 5753 5962 -1920 5 831 2080 241 66 73 chr4 32302584 32303270 -123326850 - Lx9 LINE L1 0 7644 6964 5 831 265 211 39 0 chr4 32303277 32303329 -123326791 + ID2 SINE ID 21 74 -9 5 831 348 274 0 40 chr4 32304141 32304240 -123325880 + Lx9 LINE L1 7092 7186 -458 5 831 254 254 68 60 chr4 32304276 32304393 -123325727 + RMER1C Other Other 1225 1342 0 5 831 246 303 91 0 chr4 32305546 32305645 -123324475 + L1ME3A LINE L1 6034 6141 -32 5 831 475 320 34 0 chr4 32306040 32306187 -123323933 + MIRb SINE MIR 40 191 -77 5 831 234 0 0 0 chr4 32306270 32306296 -123323824 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 831 412 354 35 47 chr4 32307683 32307852 -123322268 + B3A SINE B2 15 181 -17 5 831 21 57 0 0 chr4 32307898 32307933 -123322187 + AT_rich Low_complexity Low_complexity 1 35 0 5 831 919 242 161 39 chr4 32307933 32308268 -123321852 + MTEb LTR MaLR 1 376 -3 5 831 462 119 56 7 chr4 32310419 32310563 -123319557 + (TG)n Simple_repeat Simple_repeat 1 151 0 5 831 200 204 0 53 chr4 32310564 32310621 -123319499 + (ATGTG)n Simple_repeat Simple_repeat 1 54 0 5 831 224 81 80 13 chr4 32310622 32310697 -123319423 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 831 234 140 42 34 chr4 32310794 32310912 -123319208 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 831 701 254 36 21 chr4 32310916 32311109 -123319011 - B4 SINE B4 0 292 97 5 831 210 152 65 0 chr4 32311120 32311212 -123318908 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 831 228 297 95 0 chr4 32311281 32311355 -123318765 - B4A SINE B4 -211 81 1 5 831 399 341 119 49 chr4 32312405 32312750 -123317370 + MLT1M LTR MaLR 37 405 -267 5 831 303 28 0 0 chr4 32312880 32312916 -123317204 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 831 645 56 0 0 chr4 32312916 32313005 -123317115 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 831 265 250 0 0 chr4 32313944 32314000 -123316120 - MIRm SINE MIR -115 161 106 5 831 263 307 0 0 chr4 32314724 32314799 -123315321 + MIR SINE MIR 1 75 -187 5 831 366 239 154 9 chr4 32315112 32315222 -123314898 + MLT1A1 LTR MaLR 268 393 -15 5 831 230 338 0 14 chr4 32315481 32315553 -123314567 - RSINE1 SINE B4 -92 73 3 5 831 1118 314 133 30 chr4 32315556 32315991 -123314129 + L1M3 LINE L1 4513 4980 -1160 5 831 252 0 0 0 chr4 32315991 32316019 -123314101 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 831 1118 294 99 36 chr4 32316019 32316433 -123313687 + L1M3 LINE L1 4981 5446 -737 5 831 613 269 43 134 chr4 32316433 32316850 -123313270 - MTE2a LTR MaLR 0 379 1 5 831 509 264 50 45 chr4 32316850 32316878 -123313242 + L1M3 LINE L1 5447 5473 -710 5 831 531 0 0 0 chr4 32316879 32316938 -123313182 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 831 354 210 16 0 chr4 32317040 32317102 -123313018 - ID SINE ID -160 64 2 5 831 559 70 0 0 chr4 32317224 32317295 -123312825 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 5 831 903 51 9 16 chr4 32317316 32317444 -123312676 + B1_Mus2 SINE Alu 21 146 -1 5 831 645 234 57 0 chr4 32317712 32317853 -123312267 + B3A SINE B2 3 151 -47 5 831 497 44 0 14 chr4 32318034 32318103 -123312017 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 831 219 279 72 14 chr4 32318742 32318811 -123311309 + PB1D10 SINE Alu 33 105 -12 5 831 242 330 31 21 chr4 32319979 32320075 -123310045 - B3 SINE B2 0 216 120 5 831 348 269 97 109 chr4 32320017 32320318 -123309802 - RSINE1 SINE B4 0 292 2 5 831 252 316 5 33 chr4 32320772 32320894 -123309226 + L2b LINE L2 3080 3200 -187 5 831 408 323 174 20 chr4 32321677 32321852 -123308268 + L2 LINE L2 2094 2289 -1130 5 831 198 0 0 0 chr4 32321852 32321874 -123308246 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 831 408 323 174 20 chr4 32321874 32322185 -123307935 + L2 LINE L2 2290 2655 -764 5 831 234 0 0 0 chr4 32322778 32322804 -123307316 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 831 897 109 66 0 chr4 32324074 32324211 -123305909 + B1_Mus2 SINE Alu 1 146 -1 5 831 265 269 12 25 chr4 32325725 32325885 -123304235 + (CCG)n Simple_repeat Simple_repeat 3 160 0 5 831 21 71 0 0 chr4 32326124 32326166 -123303954 + GC_rich Low_complexity Low_complexity 1 42 0 5 831 279 262 33 0 chr4 32328410 32328471 -123301649 + AmnSINE1 SINE SINE 510 572 -3 5 831 253 308 57 82 chr4 32329141 32329300 -123300820 + MER45A DNA Tip100 24 178 0 5 831 238 172 0 79 chr4 32329475 32329538 -123300582 + RSINE1 SINE B4 3 60 -105 5 831 477 0 0 0 chr4 32329576 32329629 -123300491 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 831 252 281 44 11 chr4 32330083 32330173 -123299947 - MIRb SINE MIR -15 253 161 5 831 456 269 104 35 chr4 32330237 32330410 -123299710 - RMER30 DNA MER1_type -8 194 10 5 831 1091 96 0 0 chr4 32331868 32332014 -123298106 - B1_Mus1 SINE Alu -1 147 2 5 831 328 92 324 45 chr4 32332078 32332189 -123297931 - B2_Mm2 SINE B2 -7 188 47 5 831 797 123 226 0 chr4 32332236 32332382 -123297738 - B2_Mm1t SINE B2 -14 179 1 5 831 236 260 63 25 chr4 32335403 32335482 -123294638 - MamRep1161 DNA TcMar -120 837 756 5 831 226 278 0 40 chr4 32335601 32335676 -123294444 + CT-rich Low_complexity Low_complexity 3 74 0 5 831 186 167 0 0 chr4 32335705 32335741 -123294379 + CT-rich Low_complexity Low_complexity 3 38 0 5 831 24 0 0 0 chr4 32336437 32336461 -123293659 + AT_rich Low_complexity Low_complexity 1 24 0 5 831 1062 91 0 0 chr4 32336562 32336775 -123293345 + (TG)n Simple_repeat Simple_repeat 1 213 0 5 831 546 146 0 0 chr4 32338597 32338693 -123291427 + (GGGA)n Simple_repeat Simple_repeat 2 97 0 5 831 249 33 0 0 chr4 32338725 32338755 -123291365 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 5 831 629 248 7 0 chr4 32339745 32339882 -123290238 - B1_Mur1 SINE Alu -10 139 2 5 831 28 0 0 0 chr4 32339984 32340012 -123290108 + AT_rich Low_complexity Low_complexity 1 28 0 5 831 897 162 0 13 chr4 32340012 32340162 -123289958 - B1_Mus1 SINE Alu 0 148 1 5 831 378 0 0 0 chr4 32340170 32340212 -123289908 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5 831 366 293 106 31 chr4 32340341 32340562 -123289558 + L1ME3B LINE L1 5261 5513 -660 5 831 308 304 60 13 chr4 32340992 32341142 -123288978 + L1ME3B LINE L1 5848 6004 -236 5 831 324 254 0 0 chr4 32341163 32341340 -123288780 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 831 342 330 21 0 chr4 32342178 32342275 -123287845 + B1F1 SINE Alu 1 99 -50 5 831 231 36 0 0 chr4 32342288 32342316 -123287804 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 831 366 261 100 33 chr4 32342905 32343073 -123287047 - Lx7 LINE L1 -13 7683 7500 5 831 1761 123 30 20 chr4 32343073 32343371 -123286749 + Lx LINE L1 6354 6654 0 5 831 1464 246 8 27 chr4 32343371 32343739 -123286381 - Lx7 LINE L1 -340 7356 6996 5 831 1488 225 89 0 chr4 32346619 32346966 -123283154 + MTD LTR MaLR 3 380 -39 5 831 333 0 0 0 chr4 32347191 32347228 -123282892 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 831 378 0 0 0 chr4 32347228 32347269 -123282851 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 831 189 0 0 0 chr4 32347269 32347289 -123282831 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 831 760 158 132 23 chr4 32347594 32347814 -123282306 - Lx9 LINE L1 -2 7642 7399 5 831 389 303 124 53 chr4 32347805 32347929 -123282191 - Lx8 LINE L1 -5 7468 7325 5 831 486 0 0 0 chr4 32347929 32347983 -123282137 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 831 389 303 124 53 chr4 32347983 32348140 -123281980 - Lx8 LINE L1 -149 7324 7167 5 831 556 307 22 45 chr4 32348231 32348453 -123281667 - ID_B1 SINE B4 -2 222 6 5 831 239 241 55 18 chr4 32349037 32349147 -123280973 - Charlie10 DNA MER1_type -14 2808 2695 5 831 500 287 151 47 chr4 32349153 32349361 -123280759 + B4A SINE B4 1 230 -62 5 831 332 225 50 0 chr4 32349361 32349441 -123280679 + RSINE1 SINE B4 3 86 -79 5 831 285 29 0 0 chr4 32349460 32349494 -123280626 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 5 831 276 154 0 0 chr4 32349633 32349685 -123280435 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 831 546 16 0 0 chr4 32349685 32349748 -123280372 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 831 389 19 38 0 chr4 32349833 32349886 -123280234 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 5 831 201 74 0 0 chr4 32350430 32350457 -123279663 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 831 273 98 0 0 chr4 32350942 32350983 -123279137 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 831 784 296 51 10 chr4 32350987 32351281 -123278839 - L1MB5 LINE L1 -8 6166 5861 5 831 277 231 0 188 chr4 32351285 32351381 -123278739 - ID_B1 SINE B4 -2 222 145 5 831 428 209 184 14 chr4 32351414 32351555 -123278565 - L1MB8 LINE L1 -304 5874 5710 5 831 189 0 0 0 chr4 32351556 32351577 -123278543 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 831 205 217 32 48 chr4 32351693 32351756 -123278364 + MIRb SINE MIR 160 221 -47 5 831 332 120 0 0 chr4 32353230 32353280 -123276840 + B1_Mus2 SINE Alu 85 134 -13 5 831 180 0 0 0 chr4 32353280 32353300 -123276820 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 831 180 200 0 0 chr4 32353543 32353583 -123276537 + T-rich Low_complexity Low_complexity 1 40 0 5 831 191 306 78 55 chr4 32354217 32354345 -123275775 - L2c LINE L2 -1 3386 3256 5 831 233 75 25 0 chr4 32354867 32354907 -123275213 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 5 831 423 385 63 29 chr4 32355867 32356105 -123274015 + LTR16B LTR ERVL 23 268 -195 5 831 1292 294 78 72 chr4 32356350 32356969 -123273151 + L1M3 LINE L1 2621 3280 -2860 5 831 610 287 44 64 chr4 32356969 32357267 -123272853 + B4A SINE B4 1 292 0 5 831 1292 294 78 72 chr4 32357267 32357552 -123272568 + L1M3 LINE L1 3281 3531 -2609 5 831 944 231 77 9 chr4 32357743 32358079 -123272041 + L1M3 LINE L1 4060 4418 -1722 5 831 884 143 200 5 chr4 32358083 32358273 -123271847 + RMER4B LTR ERVK 347 573 -12 6 831 378 267 207 10 chr4 32358290 32358498 -123271622 + MTD LTR MaLR 51 299 -120 6 831 7465 259 60 63 chr4 32358545 32358815 -123271305 - L1_Rod LINE L1 -1574 4273 4002 6 831 790 176 200 16 chr4 32358815 32359005 -123271115 + URR1A DNA MER1_type 2 226 0 6 831 7465 259 60 63 chr4 32359005 32360515 -123269605 - L1_Rod LINE L1 -1846 4001 2601 6 831 330 80 0 0 chr4 32360515 32360565 -123269555 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 831 7465 259 60 63 chr4 32360565 32361801 -123268319 - L1_Rod LINE L1 -3247 2600 1268 6 831 229 200 0 20 chr4 32362806 32362857 -123267263 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 831 249 163 0 0 chr4 32363108 32363157 -123266963 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 6 831 588 254 92 16 chr4 32363210 32363394 -123266726 + B3A SINE B2 1 198 0 6 831 626 163 111 0 chr4 32363457 32363592 -123266528 - URR1A DNA MER1_type 0 226 77 6 831 215 211 13 66 chr4 32364659 32364735 -123265385 + CT-rich Low_complexity Low_complexity 3 74 0 6 831 186 43 0 0 chr4 32365468 32365491 -123264629 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 831 264 220 0 0 chr4 32365491 32365550 -123264570 - B1_Mur2 SINE Alu -11 138 80 6 831 315 242 111 16 chr4 32365713 32365839 -123264281 - L1MB2 LINE L1 -1 6170 6033 6 831 545 190 0 20 chr4 32366128 32366230 -123263890 - PB1D10 SINE Alu 0 117 18 6 831 838 211 0 32 chr4 32366307 32366493 -123263627 - B3A SINE B2 -16 182 3 6 831 364 114 0 92 chr4 32366893 32367077 -123263043 + (GTCTG)n Simple_repeat Simple_repeat 5 171 0 6 831 204 286 0 0 chr4 32367090 32367146 -123262974 + (CAGTC)n Simple_repeat Simple_repeat 1 56 0 6 831 360 227 345 0 chr4 32367865 32367984 -123262136 + RSINE1 SINE B4 3 162 -3 6 831 21 0 0 0 chr4 32368059 32368080 -123262040 + AT_rich Low_complexity Low_complexity 1 21 0 6 831 218 175 0 0 chr4 32368357 32368397 -123261723 + CT-rich Low_complexity Low_complexity 2 41 0 6 831 325 214 0 28 chr4 32368772 32368844 -123261276 - PB1D10 SINE Alu 0 117 48 6 831 252 0 0 0 chr4 32369675 32369703 -123260417 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 831 2303 221 17 87 chr4 32369703 32370412 -123259708 - L1_Rod LINE L1 -1663 4184 3526 6 831 393 367 0 22 chr4 32370580 32370764 -123259356 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 831 465 292 22 14 chr4 32371074 32371213 -123258907 + RSINE1 SINE B4 15 154 -11 6 831 22 35 0 0 chr4 32371275 32371304 -123258816 + AT_rich Low_complexity Low_complexity 1 29 0 6 831 253 279 75 12 chr4 32371415 32371495 -123258625 - B3A SINE B2 -70 128 44 6 831 490 254 138 48 chr4 32371596 32371865 -123258255 - RMER20B LTR ERVK -210 417 125 6 831 223 224 12 95 chr4 32372217 32372301 -123257819 - ID4_ SINE ID -6 77 1 6 831 485 260 96 25 chr4 32372387 32372584 -123257536 + L1MC2 LINE L1 6010 6220 -124 6 831 567 0 0 0 chr4 32372719 32372782 -123257338 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 831 21 36 0 0 chr4 32374190 32374218 -123255902 + AT_rich Low_complexity Low_complexity 1 28 0 6 103 629 296 85 15 chr4 32374626 32374897 -123255223 + MER2 DNA MER2_type 14 303 -42 6 832 252 0 0 0 chr4 32374996 32375024 -123255096 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 832 207 0 0 0 chr4 32376341 32376364 -123253756 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 832 225 350 64 16 chr4 32377501 32377626 -123252494 - B4A SINE B4 -78 214 84 6 832 470 248 56 7 chr4 32379733 32379875 -123250245 - B1F SINE Alu 0 149 1 6 832 224 387 28 17 chr4 32381700 32381876 -123248244 + (CCTG)n Simple_repeat Simple_repeat 1 178 0 6 832 245 365 32 0 chr4 32381889 32382102 -123248018 + (TCTG)n Simple_repeat Simple_repeat 1 219 0 6 832 264 333 133 0 chr4 32382987 32383107 -123247013 - MER5B DNA MER1_type -14 164 29 6 832 303 190 62 115 chr4 32384930 32385043 -123245077 - PB1D7 SINE Alu -10 110 4 6 832 256 362 9 0 chr4 32385609 32385714 -123244406 - PB1D10 SINE Alu -9 108 3 6 832 567 313 42 78 chr4 32386727 32387011 -123243109 - MTD LTR MaLR -145 274 1 6 832 279 257 0 79 chr4 32387856 32387970 -123242150 + B1F SINE Alu 45 149 0 6 832 402 261 94 28 chr4 32388505 32388718 -123241402 + MER33 DNA MER1_type 1 227 -97 6 832 485 259 29 29 chr4 32389289 32389428 -123240692 + ID_B1 SINE B4 2 140 -84 6 832 198 0 0 0 chr4 32389722 32389744 -123240376 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 832 468 0 0 0 chr4 32390568 32390620 -123239500 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 832 672 170 0 0 chr4 32391027 32391186 -123238934 + GA-rich Low_complexity Low_complexity 4 162 0 6 832 650 199 24 5 chr4 32392742 32392887 -123237233 - ORR1D2 LTR MaLR -155 223 81 6 832 528 93 0 0 chr4 32393062 32393137 -123236983 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 832 217 239 0 0 chr4 32393146 32393192 -123236928 + GA-rich Low_complexity Low_complexity 1 46 0 6 832 470 252 28 7 chr4 32394935 32395079 -123235041 - RMER15 LTR ERVL -14 561 415 6 832 1651 207 19 21 chr4 32395079 32395454 -123234666 + ORR1D1 LTR MaLR 1 374 0 6 832 291 296 0 22 chr4 32395460 32395550 -123234570 - RMER15 LTR ERVL -162 413 326 6 832 775 320 62 60 chr4 32396643 32397045 -123233075 - MTC LTR MaLR -18 403 1 6 832 650 203 0 7 chr4 32397670 32397819 -123232301 + CT-rich Low_complexity Low_complexity 3 150 0 6 832 5127 191 36 4 chr4 32397823 32398815 -123231305 - Lx5 LINE L1 0 7050 6027 6 832 320 158 0 13 chr4 32400200 32400277 -123229843 + CT-rich Low_complexity Low_complexity 4 79 0 6 832 738 256 114 0 chr4 32401221 32401448 -123228672 + B4A SINE B4 1 253 -39 6 832 396 0 0 0 chr4 32401519 32401563 -123228557 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 832 471 294 164 69 chr4 32402766 32403228 -123226892 + RLTR11A2 LTR ERVK 1 524 -4 6 832 21 0 0 0 chr4 32403870 32403891 -123226229 + AT_rich Low_complexity Low_complexity 1 21 0 6 832 266 255 161 18 chr4 32404560 32404672 -123225448 + MIR SINE MIR 29 156 -106 6 832 333 0 0 0 chr4 32404937 32404974 -123225146 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 832 1530 196 142 8 chr4 32405043 32405403 -123224717 - MTD LTR MaLR -2 417 10 6 832 203 156 0 0 chr4 32408478 32408510 -123221610 + A-rich Low_complexity Low_complexity 5 36 0 6 832 216 184 0 0 chr4 32408991 32409040 -123221080 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 832 3695 251 27 38 chr4 32410044 32410977 -123219143 - Lx7 LINE L1 -532 7164 6242 6 832 186 43 0 0 chr4 32412577 32412600 -123217520 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6 832 230 293 13 26 chr4 32415439 32415516 -123214604 - MLT1C LTR MaLR -10 438 363 6 832 607 254 20 66 chr4 32415815 32415967 -123214153 - B1F2 SINE Alu -3 146 2 6 832 393 262 106 62 chr4 32415968 32416147 -123213973 - MLT1C LTR MaLR -280 187 1 6 832 240 240 29 8 chr4 32416244 32416328 -123213792 - MLT1J2 LTR MaLR -297 147 65 6 832 1033 235 52 55 chr4 32418419 32418748 -123211372 - ORR1D1 LTR MaLR -45 329 2 6 832 6719 57 0 0 chr4 32419483 32420307 -123209813 - L1Md_F2 LINE L1 -69 5814 4991 6 832 6066 63 7 4 chr4 32420307 32421072 -123209048 + L1Md_F2 LINE L1 5804 6570 -12 6 832 351 0 0 0 chr4 32421438 32421477 -123208643 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 832 514 178 0 0 chr4 32421504 32421594 -123208526 - B1_Mur3 SINE Alu -56 93 4 6 832 372 244 47 0 chr4 32426428 32426514 -123203606 + PB1D10 SINE Alu 28 117 0 6 832 22 0 0 0 chr4 32427406 32427428 -123202692 + AT_rich Low_complexity Low_complexity 1 22 0 6 832 297 0 0 0 chr4 32427487 32427520 -123202600 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 832 295 345 26 0 chr4 32427528 32427644 -123202476 + PB1 SINE Alu 1 119 -8 6 832 240 292 138 26 chr4 32427780 32427896 -123202224 - MTEa LTR MaLR 0 379 251 6 832 348 24 0 0 chr4 32428785 32428826 -123201294 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 832 231 256 248 0 chr4 32429169 32429286 -123200834 - MIRc SINE MIR -2 266 121 6 832 378 0 0 0 chr4 32429513 32429555 -123200565 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 832 210 233 0 0 chr4 32429590 32429633 -123200487 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 832 414 0 0 0 chr4 32429667 32429713 -123200407 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 832 288 0 0 0 chr4 32429848 32429880 -123200240 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 832 432 86 0 0 chr4 32429882 32429952 -123200168 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 6 832 189 0 0 0 chr4 32430645 32430666 -123199454 + (CAG)n Simple_repeat Simple_repeat 2 22 0 6 832 225 0 0 0 chr4 32432407 32432432 -123197688 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 832 393 75 0 0 chr4 32433208 32433261 -123196859 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 832 574 293 101 16 chr4 32434174 32434660 -123195460 - L1ME1 LINE L1 -1619 6166 5657 6 832 471 60 0 0 chr4 32436071 32436138 -123193982 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 832 258 148 0 0 chr4 32436142 32436196 -123193924 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 832 741 225 125 5 chr4 32437007 32437199 -123192921 + B3 SINE B2 2 216 0 6 832 214 302 57 32 chr4 32437253 32437376 -123192744 - L2c LINE L2 -9 3378 3253 6 832 848 251 107 11 chr4 32437656 32437918 -123192202 + B4A SINE B4 5 291 -1 6 832 390 21 0 0 chr4 32437920 32437967 -123192153 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 832 430 332 53 35 chr4 32439084 32439368 -123190752 + MER119 DNA MER1_type 263 551 -32 6 832 302 237 50 20 chr4 32440101 32440200 -123189920 + ID_B1 SINE B4 9 110 -114 6 832 542 310 88 58 chr4 32440222 32440482 -123189638 + B4A SINE B4 1 268 -24 6 832 264 59 0 0 chr4 32440484 32440518 -123189602 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 832 345 236 6 17 chr4 32440602 32440783 -123189337 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 832 314 264 0 9 chr4 32440798 32440905 -123189215 + (CA)n Simple_repeat Simple_repeat 1 106 0 7 832 301 295 9 0 chr4 32440967 32441072 -123189048 + (CA)n Simple_repeat Simple_repeat 1 106 0 7 832 369 0 0 0 chr4 32441128 32441169 -123188951 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 832 233 319 54 21 chr4 32441180 32441273 -123188847 + Tigger10 DNA Tigger 1680 1775 -68 7 832 269 328 29 15 chr4 32441817 32441953 -123188167 + B4A SINE B4 133 270 -22 7 832 204 266 31 0 chr4 32441959 32442023 -123188097 + (CATG)n Simple_repeat Simple_repeat 1 66 0 7 832 945 145 0 0 chr4 32443657 32443836 -123186284 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 832 328 302 0 149 chr4 32443836 32443867 -123186253 - HAL1-3A_ME LINE L1 -856 2002 1976 7 832 816 191 3 0 chr4 32443872 32444217 -123185903 + (TG)n Simple_repeat Simple_repeat 1 346 0 7 832 330 26 0 0 chr4 32446791 32446830 -123183290 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 832 347 263 40 20 chr4 32447203 32447304 -123182816 + B1F SINE Alu 47 149 0 7 832 408 212 0 24 chr4 32447307 32447389 -123182731 + ID4 SINE ID 3 82 -1 7 832 2854 254 165 35 chr4 32447692 32448368 -123181752 + RMER1C Other Other 35 833 -509 7 832 2463 165 25 37 chr4 32448368 32448879 -123181241 - RLTR16 LTR ERVK 0 505 1 7 832 2854 254 165 35 chr4 32448879 32449360 -123180760 + RMER1C Other Other 834 1341 -1 7 832 2513 54 9 0 chr4 32449664 32449980 -123180140 + ORR1A2 LTR MaLR 1 319 -8 7 832 198 0 0 0 chr4 32452919 32452941 -123177179 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 832 293 338 61 14 chr4 32454787 32454934 -123175186 - L3b LINE CR1 -106 376 223 7 832 588 157 3 9 chr4 32456262 32456367 -123173753 + PB1D10 SINE Alu 13 116 -1 7 832 330 308 0 27 chr4 32456576 32456686 -123173434 - PB1D10 SINE Alu -8 109 3 7 832 421 351 95 40 chr4 32456749 32457075 -123173045 + LTR16B LTR ERVL 30 373 -90 7 832 548 252 0 16 chr4 32458559 32458688 -123171432 - B1F SINE Alu 0 149 23 7 832 954 151 214 5 chr4 32459803 32459990 -123170130 + URR1A DNA MER1_type 1 226 0 7 832 432 55 0 0 chr4 32460943 32460998 -123169122 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 832 825 186 117 22 chr4 32461522 32461749 -123168371 + ORR1D-int LTR MaLR 1150 1552 -28 7 832 227 330 80 0 chr4 32463291 32463379 -123166741 - MIRm SINE MIR -3 273 179 7 832 185 327 75 38 chr4 32464218 32464377 -123165743 - MIRb SINE MIR -89 179 15 7 832 337 96 375 31 chr4 32464740 32464836 -123165284 - B2_Mm2 SINE B2 -20 175 47 7 832 1210 104 29 0 chr4 32464883 32465056 -123165064 - B2_Mm1t SINE B2 -14 179 2 7 832 411 21 0 0 chr4 32465268 32465316 -123164804 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 832 462 341 155 23 chr4 32465369 32465723 -123164397 + Kanga2_a DNA Tc2 113 513 -375 7 832 219 69 0 0 chr4 32465832 32465861 -123164259 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 832 898 134 56 0 chr4 32465967 32466109 -123164011 - B1_Mur4 SINE Alu 0 150 1 7 832 351 0 0 0 chr4 32466815 32466854 -123163266 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 7 832 513 209 264 0 chr4 32466937 32466993 -123163127 - MT2A LTR ERVL 0 533 441 7 832 246 81 0 0 chr4 32466993 32467030 -123163090 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 7 832 513 209 264 0 chr4 32467030 32467121 -123162999 - MT2A LTR ERVL -93 440 348 7 832 214 98 19 19 chr4 32467820 32467872 -123162248 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 832 813 97 0 68 chr4 32467963 32468096 -123162024 - B2_Mm2 SINE B2 -6 189 66 7 832 455 111 110 11 chr4 32470099 32470190 -123159930 - Lx4A LINE L1 -3 7055 6956 7 832 226 350 19 37 chr4 32471027 32471134 -123158986 + Tigger10 DNA Tigger 1215 1319 -524 7 832 307 225 91 144 chr4 32471208 32471416 -123158704 + Tigger10 DNA Tigger 1485 1681 -162 7 832 478 252 3 3 chr4 32471915 32472021 -123158099 + B1_Mur1 SINE Alu 35 141 -8 7 832 393 22 0 0 chr4 32474985 32475031 -123155089 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 832 618 321 119 35 chr4 32477852 32478255 -123151865 - MLT1C LTR MaLR -8 459 23 7 832 359 41 0 20 chr4 32478777 32478827 -123151293 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 832 27 29 0 0 chr4 32478831 32478865 -123151255 + AT_rich Low_complexity Low_complexity 1 34 0 7 832 23 0 0 0 chr4 32478875 32478898 -123151222 + AT_rich Low_complexity Low_complexity 1 23 0 7 832 438 295 165 8 chr4 32479189 32479449 -123150671 - Tigger13a DNA MER2_type -256 515 215 7 832 293 235 145 0 chr4 32479838 32480004 -123150116 - Lx9 LINE L1 -1398 6246 6057 7 832 399 127 0 0 chr4 32480759 32480822 -123149298 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 832 2571 38 3 6 chr4 32482457 32482779 -123147341 - L1Md_F3 LINE L1 0 6584 6264 7 832 281 0 0 0 chr4 32482779 32482817 -123147303 + L1_Mm LINE L1 3834 3871 -2012 7 832 260 314 63 40 chr4 32483872 32484002 -123146118 + MER2B DNA MER2_type 170 310 -26 7 832 410 260 41 1 chr4 32484289 32484394 -123145726 + PB1D7 SINE Alu 2 110 -40 7 832 1172 187 48 0 chr4 32484503 32484712 -123145408 - URR1A DNA MER1_type 0 226 8 7 832 2221 307 100 63 chr4 32484988 32486350 -123143770 + Charlie1a DNA MER1_type 7 1419 -36 7 832 189 301 216 18 chr4 32486746 32487186 -123142934 - L2 LINE L2 -1218 2201 1675 7 832 438 20 0 0 chr4 32487623 32487674 -123142446 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 832 2645 108 54 20 chr4 32488161 32488568 -123141552 + MTC LTR MaLR 1 421 0 7 832 486 380 38 32 chr4 32490872 32491185 -123138935 - MER115 DNA Tip100 -3 690 376 7 832 203 239 81 40 chr4 32491877 32491951 -123138169 + MIRc SINE MIR 95 171 -97 7 832 592 260 20 27 chr4 32493431 32493581 -123136539 + RSINE1 SINE B4 17 165 0 7 832 501 231 6 64 chr4 32493653 32493810 -123136310 + B1_Mur1 SINE Alu 1 148 -1 7 832 1155 234 83 3 chr4 32493820 32494145 -123135975 + L1MB3 LINE L1 4427 4777 -1369 7 832 213 273 154 13 chr4 32494246 32494324 -123135796 + B1F SINE Alu 53 141 -8 7 832 583 277 145 12 chr4 32494326 32494773 -123135347 + L1MB3 LINE L1 5105 5603 -2182 7 832 252 269 0 106 chr4 32494792 32494826 -123135294 - MLT2D LTR ERVL 0 560 527 7 832 234 0 0 0 chr4 32494826 32494852 -123135268 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 832 252 269 0 106 chr4 32494852 32494921 -123135199 - MLT2D LTR ERVL -34 526 468 7 832 773 287 48 65 chr4 32494928 32495288 -123134832 + MTE2b LTR MaLR 18 373 -46 7 832 433 231 39 45 chr4 32495529 32495677 -123134443 - MLT2D LTR ERVL -212 202 49 7 832 1161 35 27 27 chr4 32495794 32495941 -123134179 + B1_Mm SINE Alu 1 147 0 7 832 185 0 40 0 chr4 32495996 32496021 -123134099 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 832 421 241 26 8 chr4 32497208 32497325 -123132795 + L1MB3 LINE L1 6062 6180 -3 7 832 262 263 153 29 chr4 32498622 32498759 -123131361 + MIRc SINE MIR 6 159 -109 7 832 240 265 12 0 chr4 32499197 32499280 -123130840 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 832 243 0 0 0 chr4 32501042 32501069 -123129051 + (CTGTG)n Simple_repeat Simple_repeat 1 27 0 1 832 261 0 0 0 chr4 32502525 32502554 -123127566 + (T)n Simple_repeat Simple_repeat 1 29 0 2 832 1026 221 101 0 chr4 32502735 32503011 -123127109 + Lx9 LINE L1 7334 7637 -7 3 832 861 203 5 65 chr4 32503040 32503240 -123126880 + B3 SINE B2 27 214 -2 4 832 27 29 0 0 chr4 32503546 32503580 -123126540 + AT_rich Low_complexity Low_complexity 1 34 0 5 832 266 290 14 0 chr4 32503647 32503716 -123126404 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 832 330 287 30 0 chr4 32504772 32504873 -123125247 - MER5A DNA MER1_type -83 106 3 7 12 515 261 101 5 chr4 32505807 32506026 -123124094 + L1MB3 LINE L1 5867 6106 -77 8 833 1308 191 43 7 chr4 32506187 32506467 -123123653 - Lx5 LINE L1 -4 7046 6757 9 833 6948 153 61 11 chr4 32506480 32508287 -123121833 - Lx5 LINE L1 -486 6564 4684 9 833 660 215 89 0 chr4 32508846 32508981 -123121139 + RSINE1 SINE B4 1 147 -18 1 833 390 74 0 0 chr4 32508998 32509052 -123121068 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 833 27 0 0 0 chr4 32509414 32509441 -123120679 + AT_rich Low_complexity Low_complexity 1 27 0 1 833 242 303 62 21 chr4 32513800 32513945 -123116175 + MIRb SINE MIR 95 245 -23 1 833 192 152 0 0 chr4 32514123 32514156 -123115964 + T-rich Low_complexity Low_complexity 1 33 0 1 833 342 0 0 0 chr4 32515137 32515175 -123114945 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 833 278 306 0 0 chr4 32515272 32515357 -123114763 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 833 250 271 0 0 chr4 32516395 32516454 -123113666 + PB1 SINE Alu 11 69 -58 1 833 292 265 0 0 chr4 32517100 32517168 -123112952 + ID4_ SINE ID 10 77 -6 1 833 306 0 0 0 chr4 32517552 32517586 -123112534 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 833 432 158 0 0 chr4 32517588 32517664 -123112456 + CT-rich Low_complexity Low_complexity 3 78 0 2 833 243 0 0 0 chr4 32518558 32518585 -123111535 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 833 453 266 57 14 chr4 32518598 32518739 -123111381 - RSINE1 SINE B4 -17 148 2 2 833 210 37 0 0 chr4 32519579 32519606 -123110514 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 2 833 182 310 176 25 chr4 32520556 32520675 -123109445 + L2a LINE L2 3014 3150 -237 2 833 3491 270 86 35 chr4 32520684 32521358 -123108762 - Lx8 LINE L1 -2 7471 6788 2 833 1137 65 0 0 chr4 32521358 32521496 -123108624 + B1_Mm SINE Alu 1 138 -9 2 833 216 86 0 0 chr4 32521496 32521531 -123108589 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 833 3491 270 86 35 chr4 32521531 32522025 -123108095 - Lx8 LINE L1 -686 6787 6244 2 833 379 152 0 0 chr4 32523413 32523479 -123106641 - B3 SINE B2 -150 66 1 2 833 528 178 0 12 chr4 32523521 32523681 -123106439 + CT-rich Low_complexity Low_complexity 1 158 0 2 833 232 282 0 37 chr4 32525874 32525943 -123104177 + L2a LINE L2 3347 3415 -11 2 833 610 255 20 13 chr4 32525943 32526094 -123104026 + RSINE1 SINE B4 2 153 -12 3 833 232 282 0 37 chr4 32526094 32526105 -123104015 + L2a LINE L2 3416 3424 -2 2 833 366 324 0 27 chr4 32526359 32526470 -123103650 + PB1D10 SINE Alu 1 108 -9 3 833 262 322 0 22 chr4 32526498 32526587 -123103533 + BC1_Mm scRNA scRNA 7 93 -59 3 833 297 0 0 0 chr4 32527370 32527403 -123102717 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 833 272 312 10 10 chr4 32528187 32528284 -123101836 - MLT1H2 LTR MaLR -4 485 389 3 833 338 65 0 0 chr4 32528694 32528740 -123101380 - B1_Mus1 SINE Alu -95 53 8 3 833 440 267 30 19 chr4 32529598 32529746 -123100374 + MTEb LTR MaLR 201 363 -16 3 833 41 21 0 0 chr4 32530698 32530746 -123099374 + AT_rich Low_complexity Low_complexity 1 48 0 3 833 353 305 39 15 chr4 32531515 32531645 -123098475 - ORR1E LTR MaLR -162 197 65 3 833 881 209 15 24 chr4 32531654 32531860 -123098260 - ORR1D1 LTR MaLR -5 369 166 3 833 282 193 0 0 chr4 32531860 32531917 -123098203 + GA-rich Low_complexity Low_complexity 3 59 0 4 833 810 225 28 17 chr4 32531918 32532099 -123098021 - ORR1D1 LTR MaLR -191 183 1 3 833 275 273 21 35 chr4 32532340 32532484 -123097636 - Lx8 LINE L1 -2 7471 7330 4 833 22 0 0 0 chr4 32532484 32532506 -123097614 + AT_rich Low_complexity Low_complexity 1 22 0 4 833 500 282 43 43 chr4 32532547 32532710 -123097410 - Lx8 LINE L1 -87 7386 7224 4 833 937 299 81 27 chr4 32532825 32533521 -123096599 - L1_Mur3 LINE L1 -3891 1989 1251 4 833 415 151 0 0 chr4 32534233 32534306 -123095814 + B1_Mur3 SINE Alu 75 147 -2 4 833 1218 61 0 0 chr4 32534554 32534701 -123095419 + B1_Mus1 SINE Alu 1 147 -1 4 833 1096 209 5 0 chr4 32534733 32534948 -123095172 + B3 SINE B2 1 216 0 4 833 1786 246 46 9 chr4 32534949 32535268 -123094852 + Lx6 LINE L1 6985 7313 -147 4 833 297 0 0 0 chr4 32535268 32535301 -123094819 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 4 833 1786 246 46 9 chr4 32535301 32535415 -123094705 + Lx6 LINE L1 7314 7434 -26 4 833 822 70 9 0 chr4 32535445 32535559 -123094561 - B1_Mus1 SINE Alu -9 139 25 5 833 940 212 139 5 chr4 32536039 32536456 -123093664 - Lx9 LINE L1 0 7644 7172 5 833 623 200 156 70 chr4 32537720 32537919 -123092201 - B3 SINE B2 0 216 1 5 833 18852 72 28 8 chr4 32538371 32541585 -123088535 - MusHAL1 LINE L1 -56 3297 16 5 833 24 0 0 0 chr4 32541918 32541942 -123088178 + AT_rich Low_complexity Low_complexity 1 24 0 5 833 272 64 21 0 chr4 32542012 32542059 -123088061 - B2_Mm1t SINE B2 -8 185 138 5 833 245 196 0 67 chr4 32542058 32542118 -123088002 - B3 SINE B2 -115 101 46 5 833 1083 108 18 0 chr4 32542140 32542306 -123087814 - B2_Mm1t SINE B2 -14 179 11 5 833 351 191 0 35 chr4 32542401 32542488 -123087632 + L1M5 LINE L1 2903 2986 -3160 5 833 348 322 106 38 chr4 32542624 32542826 -123087294 - MER58A DNA MER1_type 0 224 9 5 833 253 226 42 9 chr4 32542873 32542964 -123087156 + L1M5 LINE L1 4280 4375 -1771 5 833 245 323 73 0 chr4 32542979 32543075 -123087045 + PB1D9 SINE Alu 12 114 -6 6 833 2112 286 91 26 chr4 32543170 32544084 -123086036 - Charlie1a DNA MER1_type 0 1455 483 6 833 496 205 92 23 chr4 32544153 32544283 -123085837 + B1_Mur1 SINE Alu 3 141 -8 6 833 31 26 0 0 chr4 32544283 32544321 -123085799 + AT_rich Low_complexity Low_complexity 1 38 0 6 833 262 307 163 0 chr4 32544325 32544491 -123085629 - Charlie1a DNA MER1_type -1002 453 261 6 833 18403 86 19 9 chr4 32544491 32547749 -123082371 - L1VL2 LINE L1 -18 3597 311 6 833 544 232 75 27 chr4 32547751 32547937 -123082183 - Charlie1a DNA MER1_type -1172 283 89 6 833 954 211 5 20 chr4 32548095 32548298 -123081822 + B3 SINE B2 7 206 -10 6 833 275 357 61 22 chr4 32552736 32552965 -123077155 - L2b LINE L2 -97 3278 3041 6 833 264 328 67 28 chr4 32553092 32553271 -123076849 + L2 LINE L2 2482 2667 -752 6 833 217 252 10 10 chr4 32553544 32553648 -123076472 + CT-rich Low_complexity Low_complexity 2 105 0 6 833 550 218 6 16 chr4 32553678 32553860 -123076260 + CT-rich Low_complexity Low_complexity 1 180 0 6 833 272 271 0 0 chr4 32553867 32553926 -123076194 + C-rich Low_complexity Low_complexity 3 61 0 6 833 296 265 10 30 chr4 32554025 32554126 -123075994 + MTEb LTR MaLR 279 377 -2 7 833 372 211 52 10 chr4 32555087 32555183 -123074937 - PB1D9 SINE Alu -17 103 4 7 833 1104 88 0 0 chr4 32555533 32555680 -123074440 + B1_Mm SINE Alu 1 147 0 7 833 203 156 0 0 chr4 32555717 32555749 -123074371 + (TATG)n Simple_repeat Simple_repeat 4 35 0 7 833 21 0 0 0 chr4 32556042 32556063 -123074057 + AT_rich Low_complexity Low_complexity 1 21 0 7 833 741 179 13 76 chr4 32556494 32556651 -123073469 + B1_Mus1 SINE Alu 2 148 0 7 833 1189 217 147 13 chr4 32556651 32557039 -123073081 + Lx6 LINE L1 7018 7457 -3 7 833 218 254 16 0 chr4 32557385 32557448 -123072672 - PB1D10 SINE Alu -20 97 34 7 833 671 249 110 5 chr4 32557469 32557687 -123072433 - Tigger7 DNA MER2_type -1896 595 355 7 833 270 0 0 0 chr4 32557757 32557787 -123072333 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 833 2759 134 12 9 chr4 32557787 32558216 -123071904 - Lx4A LINE L1 -4 7054 6625 8 833 290 281 21 0 chr4 32558254 32558350 -123071770 + (TA)n Simple_repeat Simple_repeat 1 98 0 8 833 1111 263 18 18 chr4 32558351 32558630 -123071490 - B4A SINE B4 -7 285 7 8 833 491 264 216 42 chr4 32558896 32559137 -123070983 - B4 SINE B4 -8 284 2 8 833 256 254 38 14 chr4 32559351 32559446 -123070674 - L1MA6 LINE L1 -362 5938 5807 8 833 585 100 0 0 chr4 32559460 32559550 -123070570 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 8 833 684 308 140 23 chr4 32559600 32560406 -123069714 - L1MA6 LINE L1 -576 5724 4812 8 833 283 235 19 11 chr4 32560407 32560498 -123069622 - MTE2b LTR MaLR -2 377 267 8 833 647 294 50 27 chr4 32561094 32561395 -123068725 + L1ME2z LINE L1 5970 6277 -167 8 833 3496 124 109 27 chr4 32561606 32562300 -123067820 + RMER6A LTR ERVK 6 756 0 8 833 584 80 0 20 chr4 32562524 32562626 -123067494 + L1_Mus3 LINE L1 6533 6632 -6 8 833 231 36 0 0 chr4 32562626 32562654 -123067466 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 9 833 1161 76 0 0 chr4 32562655 32562813 -123067307 - B2_Mm2 SINE B2 -37 158 1 9 833 205 308 0 0 chr4 32566234 32566299 -123063821 - L2a LINE L2 -269 3157 3093 9 833 358 264 130 12 chr4 32566751 32566912 -123063208 - MIR SINE MIR -75 187 8 9 833 240 182 258 0 chr4 32567732 32567798 -123062322 + ID4 SINE ID 1 83 0 9 833 632 204 124 22 chr4 32568130 32568315 -123061805 + B3 SINE B2 2 205 -11 9 833 345 279 92 14 chr4 32568969 32569111 -123061009 + RSINE1 SINE B4 3 155 -10 9 833 21 36 0 0 chr4 32569631 32569659 -123060461 + AT_rich Low_complexity Low_complexity 1 28 0 9 833 459 78 0 0 chr4 32570689 32570753 -123059367 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 833 293 94 38 0 chr4 32570919 32570972 -123059148 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 9 833 1262 34 0 0 chr4 32570976 32571122 -123058998 - B1_Mus2 SINE Alu 0 147 2 1 833 1044 57 49 21 chr4 32571558 32571701 -123058419 + B1_Mm SINE Alu 1 147 0 1 833 26 0 0 0 chr4 32572056 32572082 -123058038 + AT_rich Low_complexity Low_complexity 1 26 0 1 833 617 302 92 15 chr4 32572114 32572505 -123057615 - L1ME3A LINE L1 -298 5875 5446 1 833 1808 199 50 3 chr4 32574381 32574763 -123055357 + MTD LTR MaLR 1 400 -19 1 833 221 191 0 0 chr4 32574773 32574820 -123055300 + ID4_ SINE ID 36 82 -1 1 833 720 235 39 29 chr4 32576239 32576399 -123053721 + B3 SINE B2 9 170 -46 1 833 2343 139 74 8 chr4 32576399 32576790 -123053330 - MTC LTR MaLR 0 421 5 1 833 720 235 39 29 chr4 32576790 32576835 -123053285 + B3 SINE B2 171 216 0 1 833 324 211 12 73 chr4 32577273 32577355 -123052765 + RSINE1 SINE B4 89 165 0 1 833 412 340 7 27 chr4 32578324 32578472 -123051648 + ID_B1 SINE B4 3 147 -77 1 833 462 306 51 70 chr4 32578501 32578715 -123051405 + B4 SINE B4 81 290 -2 1 833 508 331 166 29 chr4 32578728 32579325 -123050795 + L1MEc LINE L1 138 816 -5584 1 833 184 151 0 86 chr4 32579914 32579972 -123050148 + CT-rich Low_complexity Low_complexity 5 57 0 1 833 369 296 195 35 chr4 32580092 32580379 -123049741 + L1MEc LINE L1 4143 4475 -1844 1 833 306 200 14 54 chr4 32580400 32580474 -123049646 + ID4 SINE ID 13 83 0 1 833 21 0 0 0 chr4 32580790 32580811 -123049309 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 30 0 0 0 chr4 32580823 32580853 -123049267 + AT_rich Low_complexity Low_complexity 1 30 0 1 833 8603 104 57 14 chr4 32580899 32581007 -123049113 - Lx2 LINE L1 -2 6995 6886 1 833 198 0 0 0 chr4 32581007 32581029 -123049091 + (CCCA)n Simple_repeat Simple_repeat 3 24 0 1 833 8603 104 57 14 chr4 32581029 32582009 -123048111 - Lx2 LINE L1 -112 6885 5850 1 833 3018 60 37 0 chr4 32582009 32582391 -123047729 + MTA_Mm LTR MaLR 1 396 0 1 833 8603 104 57 14 chr4 32582391 32582630 -123047490 - Lx2 LINE L1 -1148 5849 5611 1 833 4044 280 46 24 chr4 32582631 32583268 -123046852 - Lx8 LINE L1 -51 7422 6777 1 833 5984 50 23 9 chr4 32583268 32584060 -123046060 + L1_Mus1 LINE L1 5812 6567 0 1 833 4044 280 46 24 chr4 32584060 32584713 -123045407 - Lx8 LINE L1 -697 6776 6104 1 833 267 105 53 0 chr4 32584884 32584941 -123045179 + (TATG)n Simple_repeat Simple_repeat 2 61 0 1 833 643 290 101 36 chr4 32585057 32585422 -123044698 - L1MA4 LINE L1 -368 5932 5544 1 833 2962 68 26 19 chr4 32586265 32586683 -123043437 - BGLII LTR ERVK 0 421 1 1 833 3538 195 108 8 chr4 32586683 32587619 -123042501 - MYSERV16_I-int LTR ERVK 0 2326 1297 1 833 1717 191 174 77 chr4 32587609 32588249 -123041871 - RMER3D-int LTR ERVK -1146 1696 470 1 833 933 149 44 15 chr4 32588274 32588478 -123041642 - BGLII LTR ERVK -211 210 1 1 833 330 174 253 32 chr4 32590808 32590903 -123039217 - B1_Mur4 SINE Alu -4 146 31 1 833 670 291 25 20 chr4 32591867 32592067 -123038053 - B3 SINE B2 -8 208 8 1 833 378 213 16 115 chr4 32592198 32592320 -123037800 + PB1D9 SINE Alu 3 112 -8 1 833 1352 69 40 0 chr4 32592596 32592770 -123037350 + B2_Mm2 SINE B2 1 181 -14 1 833 359 120 360 10 chr4 32592802 32592902 -123037218 + B2_Mm2 SINE B2 47 181 -14 1 833 221 238 0 45 chr4 32593161 32593227 -123036893 - L2a LINE L2 -3 3423 3361 1 833 189 259 188 0 chr4 32593532 32593617 -123036503 - L2a LINE L2 -477 2942 2842 1 833 277 333 35 55 chr4 32593775 32593975 -123036145 - L2a LINE L2 -882 2537 2342 1 833 241 140 34 34 chr4 32594490 32594549 -123035571 - Lx8 LINE L1 -1 7472 7414 1 833 225 246 29 14 chr4 32594600 32594670 -123035450 - Lx8 LINE L1 -246 7227 7157 1 833 583 247 59 24 chr4 32594730 32594924 -123035196 - Lx8 LINE L1 -473 7171 6842 1 833 215 297 122 51 chr4 32595060 32595216 -123034904 - L2a LINE L2 -1596 1823 1657 1 833 195 129 0 0 chr4 32595929 32595960 -123034160 + (A)n Simple_repeat Simple_repeat 1 31 0 1 833 21 0 0 0 chr4 32596869 32596890 -123033230 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 4820 234 72 131 chr4 32599005 32599737 -123030383 - L1_Mur3 LINE L1 -1705 4175 3465 1 833 376 185 24 12 chr4 32599737 32599819 -123030301 - URR1B DNA MER1_type 0 225 143 1 833 4820 234 72 131 chr4 32599819 32600231 -123029889 - L1_Mur3 LINE L1 -1705 3464 3063 1 833 1215 35 7 0 chr4 32600231 32600373 -123029747 - B1_Mus2 SINE Alu 0 147 5 1 833 4820 234 72 131 chr4 32600373 32601359 -123028761 - L1_Mur3 LINE L1 -2818 3062 2092 1 833 1231 41 0 7 chr4 32601423 32601571 -123028549 + B1_Mus2 SINE Alu 1 147 0 1 833 186 118 0 0 chr4 32601571 32601605 -123028515 + (A)n Simple_repeat Simple_repeat 1 34 0 1 833 1028 200 52 4 chr4 32601762 32601993 -123028127 + 7SK RNA RNA 2 243 -88 1 833 611 275 25 15 chr4 32602962 32603165 -123026955 + ID_B1 SINE B4 12 216 -8 1 833 442 243 26 70 chr4 32603235 32603350 -123026770 + RSINE1 SINE B4 9 118 -47 1 833 25 0 0 0 chr4 32604224 32604249 -123025871 + AT_rich Low_complexity Low_complexity 1 25 0 1 833 327 326 11 0 chr4 32605137 32605232 -123024888 + PB1 SINE Alu 1 96 -31 1 833 336 311 17 8 chr4 32605262 32605382 -123024738 + GA-rich Low_complexity Low_complexity 4 124 0 1 833 235 293 153 11 chr4 32605382 32605558 -123024562 - L2a LINE L2 -15 3411 3211 1 833 455 251 141 70 chr4 32605608 32605878 -123024242 + L1M2 LINE L1 4889 5177 -966 1 833 1104 133 0 0 chr4 32605878 32606058 -123024062 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 1 833 376 231 95 59 chr4 32606063 32606284 -123023836 + L1_Mur3 LINE L1 5230 5458 -422 1 833 1021 223 45 64 chr4 32606326 32606700 -123023420 - ORR1D1 LTR MaLR -7 367 1 1 833 260 195 127 25 chr4 32606700 32606779 -123023341 + B4 SINE B4 37 123 -169 1 833 253 351 13 0 chr4 32606839 32606916 -123023204 + RSINE1 SINE B4 84 161 -4 1 833 207 0 0 0 chr4 32606937 32606960 -123023160 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 833 288 130 0 0 chr4 32607007 32607053 -123023067 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 1 833 197 268 214 10 chr4 32607196 32607294 -123022826 - L2a LINE L2 -831 2588 2471 1 833 225 146 0 0 chr4 32609855 32609903 -123020217 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 833 279 287 45 23 chr4 32609905 32610037 -123020083 + Lx6 LINE L1 7288 7422 -38 1 833 21 0 0 0 chr4 32610037 32610058 -123020062 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 806 73 0 0 chr4 32610058 32610168 -123019952 + B2_Mm2 SINE B2 1 110 -85 1 833 790 135 44 22 chr4 32612334 32612470 -123017650 + B1_Mus1 SINE Alu 2 140 -8 1 833 287 262 8 134 chr4 32612510 32612527 -123017593 + MT2B2 LTR ERVL 153 154 -430 1 833 583 261 49 14 chr4 32612527 32612671 -123017449 + B1F SINE Alu 1 149 0 1 833 377 326 40 13 chr4 32613178 32613327 -123016793 + MER3 DNA MER1_type 56 208 -1 1 833 320 314 48 19 chr4 32613332 32613436 -123016684 + L2b LINE L2 3269 3375 0 1 833 1396 63 10 0 chr4 32614154 32614457 -123015663 + (GAAA)n Simple_repeat Simple_repeat 1 305 0 1 833 1232 295 117 26 chr4 32615066 32615571 -123014549 - Lx8 LINE L1 0 7473 6923 1 833 318 222 161 0 chr4 32615607 32615688 -123014432 - PB1D10 SINE Alu -22 95 2 1 833 467 303 0 0 chr4 32621684 32621783 -123008337 + PB1 SINE Alu 6 104 -23 1 833 679 292 30 40 chr4 32621869 32621931 -123008189 - B3A SINE B2 0 198 140 1 833 342 0 0 0 chr4 32621931 32621969 -123008151 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 833 679 292 30 40 chr4 32621969 32622106 -123008014 - B3A SINE B2 -59 139 1 1 833 264 143 0 0 chr4 32622474 32622530 -123007590 + (TGG)n Simple_repeat Simple_repeat 2 57 0 1 833 307 321 136 23 chr4 32622530 32622744 -123007376 - MIR SINE MIR -9 253 16 1 833 275 291 138 6 chr4 32623206 32623365 -123006755 + MLT1D LTR MaLR 23 202 -303 1 833 567 267 30 0 chr4 32623554 32623685 -123006435 + B1_Mur2 SINE Alu 4 138 -11 1 833 387 0 0 0 chr4 32624564 32624607 -123005513 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 833 342 0 0 0 chr4 32624652 32624690 -123005430 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 833 626 214 200 0 chr4 32629535 32629680 -123000440 - B3A SINE B2 -24 174 1 1 833 807 291 108 9 chr4 32630158 32630586 -122999534 - L1M3 LINE L1 -408 5763 5284 1 833 228 67 0 0 chr4 32630586 32630616 -122999504 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 833 597 264 127 6 chr4 32630616 32630857 -122999263 - L1M3 LINE L1 -857 5283 5019 1 833 25 31 0 0 chr4 32631843 32631875 -122998245 + AT_rich Low_complexity Low_complexity 1 32 0 1 833 1431 222 69 36 chr4 32632514 32632878 -122997242 - MTE2b LTR MaLR 0 379 4 1 833 216 0 0 0 chr4 32633455 32633479 -122996641 + (T)n Simple_repeat Simple_repeat 1 24 0 1 833 1127 82 7 0 chr4 32633479 32633625 -122996495 - B1_Mm SINE Alu 0 147 1 1 833 255 299 85 73 chr4 32633666 32633843 -122996277 - LTR33A_ LTR ERVL -12 508 330 1 833 1694 231 112 89 chr4 32634178 32635160 -122994960 - RMER13B LTR ERVK -4 904 12 1 833 550 175 62 0 chr4 32635195 32635292 -122994828 + B3 SINE B2 2 104 -112 1 833 501 267 100 0 chr4 32635444 32635564 -122994556 + ID_B1 SINE B4 77 208 -16 1 833 377 228 27 82 chr4 32635597 32635707 -122994413 + PB1 SINE Alu 13 116 -11 1 833 1208 188 52 13 chr4 32635661 32635893 -122994227 - ORR1D1 LTR MaLR -132 242 2 1 104 6602 186 54 21 chr4 32635898 32637198 -122992922 - ORR1D1-int LTR MaLR -1 1369 28 1 834 643 141 147 8 chr4 32637198 32637327 -122992793 - ORR1D1 LTR MaLR -227 147 1 1 834 1126 107 41 6 chr4 32637598 32637768 -122992352 + B2_Mm1t SINE B2 4 179 -14 1 834 425 138 324 18 chr4 32637819 32637930 -122992190 + B2_Mm2 SINE B2 47 191 -4 1 834 334 269 7 78 chr4 32637935 32638076 -122992044 + L1_Rod LINE L1 5537 5667 -180 1 834 384 71 0 0 chr4 32638080 32638136 -122991984 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 834 671 131 0 20 chr4 32638266 32638367 -122991753 + B1_Mur4 SINE Alu 50 148 -2 1 834 700 221 106 15 chr4 32638411 32638609 -122991511 + B3 SINE B2 1 216 0 1 834 543 31 0 0 chr4 32638620 32638685 -122991435 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1 834 820 234 32 0 chr4 32639637 32639795 -122990325 - B3A SINE B2 -34 164 2 1 834 1189 261 124 89 chr4 32639826 32640343 -122989777 - Lx8 LINE L1 -9 7464 6930 1 834 603 265 21 36 chr4 32640404 32640596 -122989524 - Lx8 LINE L1 -674 6799 6611 1 834 420 20 0 0 chr4 32641587 32641636 -122988484 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 834 308 264 32 21 chr4 32641962 32642055 -122988065 + MIRb SINE MIR 43 136 -132 2 834 504 296 179 16 chr4 32642319 32643002 -122987118 - L1MA9 LINE L1 -6 6294 5454 2 834 704 172 0 72 chr4 32643003 32643141 -122986979 - B1_Mur1 SINE Alu 0 149 22 2 834 1253 270 52 55 chr4 32643176 32643776 -122986344 - L1MA9 LINE L1 -895 5248 4651 2 834 287 274 98 61 chr4 32643776 32643939 -122986181 - RMER15 LTR ERVL 0 575 407 2 834 22 0 0 0 chr4 32644372 32644394 -122985726 + AT_rich Low_complexity Low_complexity 1 22 0 2 834 304 185 131 36 chr4 32644407 32644491 -122985629 + Lx8 LINE L1 6126 6217 -1256 2 834 580 186 105 0 chr4 32644491 32644615 -122985505 - MTD LTR MaLR 0 419 283 2 834 720 241 50 6 chr4 32644640 32644799 -122985321 - MTD LTR MaLR -236 183 18 2 834 2475 300 68 33 chr4 32644896 32645809 -122984311 + Lx8 LINE L1 6329 7273 -200 2 834 959 171 50 0 chr4 32645949 32646130 -122983990 + URR1A DNA MER1_type 37 226 0 2 834 288 287 81 0 chr4 32646234 32646321 -122983799 + PB1D10 SINE Alu 2 95 -22 2 834 1109 85 23 0 chr4 32646334 32646510 -122983610 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 834 275 317 96 12 chr4 32646517 32646600 -122983520 - PB1 SINE Alu -27 100 11 2 834 984 269 93 36 chr4 32646614 32647088 -122983032 - L1MA9 LINE L1 -1512 4631 4131 2 834 21 0 0 0 chr4 32647142 32647163 -122982957 + AT_rich Low_complexity Low_complexity 1 21 0 2 834 950 162 0 7 chr4 32648024 32648173 -122981947 + B1_Mur2 SINE Alu 2 149 0 2 834 2278 162 65 12 chr4 32650430 32650830 -122979290 - MTC LTR MaLR 0 421 1 2 834 187 54 0 51 chr4 32652613 32652652 -122977468 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 834 1212 49 0 0 chr4 32652810 32652952 -122977168 - B1_Mm SINE Alu -5 142 1 2 834 387 0 0 0 chr4 32653089 32653132 -122976988 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 834 672 213 155 57 chr4 32653627 32653821 -122976299 + B3 SINE B2 2 214 -2 2 834 1007 57 0 0 chr4 32653824 32653947 -122976173 + B1_Mm SINE Alu 13 135 -12 2 834 312 27 0 0 chr4 32653953 32653990 -122976130 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 834 342 45 0 0 chr4 32653990 32654034 -122976086 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 2 834 828 295 137 46 chr4 32654046 32654718 -122975402 - L1MB8 LINE L1 -17 6161 5429 2 834 274 247 182 20 chr4 32654929 32655028 -122975092 + PB1D10 SINE Alu 3 117 0 2 834 417 153 0 0 chr4 32655036 32655108 -122975012 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 834 242 95 24 0 chr4 32655110 32655152 -122974968 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 2 834 673 231 29 36 chr4 32655310 32655449 -122974671 - B1_Mur4 SINE Alu -3 147 10 2 834 812 183 137 12 chr4 32655439 32655627 -122974493 + ORR1C1 LTR MaLR 199 421 0 2 834 23 33 0 0 chr4 32655632 32655662 -122974458 + AT_rich Low_complexity Low_complexity 1 30 0 2 834 201 383 68 34 chr4 32656136 32656282 -122973838 - MIRc SINE MIR -38 230 80 2 834 268 191 186 26 chr4 32658905 32658995 -122971125 + MER33 DNA MER1_type 139 239 -85 2 834 198 0 0 0 chr4 32658995 32659017 -122971103 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 834 268 191 186 26 chr4 32659017 32659039 -122971081 + MER33 DNA MER1_type 240 269 -55 2 834 588 188 35 18 chr4 32659081 32659195 -122970925 - PB1D9 SINE Alu -4 116 1 2 834 340 216 110 30 chr4 32659330 32659430 -122970690 - ID_B1 SINE B4 -11 213 106 2 834 1287 124 0 5 chr4 32659545 32659732 -122970388 + B2_Mm2 SINE B2 1 186 -9 2 834 410 269 60 69 chr4 32659853 32659969 -122970151 - ID_B1 SINE B4 -17 207 93 2 834 1037 195 80 0 chr4 32660090 32660218 -122969902 - B3 SINE B2 0 216 80 2 834 321 68 0 0 chr4 32660218 32660262 -122969858 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 834 1037 195 80 0 chr4 32660262 32660333 -122969787 - B3 SINE B2 -137 79 3 2 834 387 292 152 18 chr4 32660396 32660559 -122969561 - MLT1F LTR MaLR -34 514 329 2 834 276 356 10 0 chr4 32660559 32660660 -122969460 + RSINE1 SINE B4 3 104 -61 2 834 189 234 43 0 chr4 32660970 32661017 -122969103 - MIR SINE MIR -62 146 98 2 834 333 0 0 0 chr4 32661356 32661393 -122968727 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 834 493 224 102 23 chr4 32661393 32661521 -122968599 - B1F SINE Alu -11 138 1 2 834 1187 165 19 14 chr4 32661646 32661861 -122968259 + B3 SINE B2 1 216 0 2 834 756 204 20 56 chr4 32661890 32662087 -122968033 + B3A SINE B2 3 192 -6 2 834 43 20 0 0 chr4 32662087 32662137 -122967983 + AT_rich Low_complexity Low_complexity 1 50 0 2 834 1559 33 22 0 chr4 32662684 32662868 -122967252 - B2_Mm2 SINE B2 -6 189 2 2 834 1225 271 35 24 chr4 32663036 32663396 -122966724 - MTD LTR MaLR -32 387 1 2 834 238 270 48 0 chr4 32663503 32663566 -122966554 - B1_Mus1 SINE Alu -55 93 28 2 834 282 265 12 12 chr4 32664650 32664734 -122965386 - L1MC1 LINE L1 0 6333 6250 2 834 5038 112 132 102 chr4 32664735 32665473 -122964647 - RLTR25A LTR ERVK 0 1103 337 2 834 1185 74 0 7 chr4 32665473 32665622 -122964498 - B1_Mus1 SINE Alu 0 148 1 2 834 5038 112 132 102 chr4 32665622 32665950 -122964170 - RLTR25A LTR ERVK -767 336 5 2 834 189 0 0 0 chr4 32666206 32666227 -122963893 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 834 587 152 0 0 chr4 32666280 32666379 -122963741 + B1_Mur4 SINE Alu 52 150 0 2 834 243 0 0 0 chr4 32669446 32669473 -122960647 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 834 279 0 0 0 chr4 32669473 32669503 -122960617 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 834 211 121 0 108 chr4 32670043 32670108 -122960012 + T-rich Low_complexity Low_complexity 3 60 0 2 834 1243 34 7 0 chr4 32670111 32670257 -122959863 - B1_Mus1 SINE Alu -1 147 1 2 834 231 232 0 35 chr4 32671449 32671507 -122958613 + C-rich Low_complexity Low_complexity 6 61 0 2 834 268 237 84 21 chr4 32673406 32673501 -122956619 + PB1 SINE Alu 2 102 -25 2 834 207 0 0 0 chr4 32673609 32673632 -122956488 + (A)n Simple_repeat Simple_repeat 1 23 0 2 834 1356 75 6 0 chr4 32674259 32674432 -122955688 - B2_Mm2 SINE B2 -18 177 4 2 834 1901 189 46 5 chr4 32675065 32675458 -122954662 - MTD LTR MaLR -9 410 2 2 834 1251 84 67 0 chr4 32675536 32675715 -122954405 + B2_Mm2 SINE B2 1 191 -4 2 834 919 191 36 0 chr4 32676062 32676256 -122953864 + B3 SINE B2 16 216 0 2 834 630 267 12 36 chr4 32676337 32676370 -122953750 + RSINE1 SINE B4 3 30 -135 2 834 2842 30 29 23 chr4 32676370 32676713 -122953407 - ORR1A1 LTR MaLR -1 345 1 2 834 630 267 12 36 chr4 32676713 32676846 -122953274 + RSINE1 SINE B4 31 165 0 2 834 1958 142 23 6 chr4 32676845 32677193 -122952927 + RLTR15 LTR ERVK 6 359 0 2 834 1363 258 56 43 chr4 32677514 32677928 -122952192 - MTD LTR MaLR 0 419 1 2 834 237 234 99 121 chr4 32678011 32678152 -122951968 + B1F1 SINE Alu 6 143 -6 2 834 509 332 35 99 chr4 32678179 32678463 -122951657 + B4A SINE B4 27 292 0 2 834 1248 262 135 13 chr4 32678490 32679050 -122951070 + L1MA4 LINE L1 5300 5936 -364 2 834 21 0 0 0 chr4 32679056 32679077 -122951043 + AT_rich Low_complexity Low_complexity 1 21 0 2 834 267 54 0 0 chr4 32679077 32679114 -122951006 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 834 369 0 0 0 chr4 32679132 32679173 -122950947 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 834 1042 90 14 0 chr4 32679343 32679487 -122950633 - B1_Mus1 SINE Alu 0 148 3 2 834 353 307 9 0 chr4 32679681 32679790 -122950330 + PB1 SINE Alu 26 223 -88 2 834 459 194 0 0 chr4 32679793 32679886 -122950234 + GA-rich Low_complexity Low_complexity 4 96 0 2 834 632 195 409 23 chr4 32679891 32680164 -122949956 - MTD LTR MaLR -14 405 5 2 834 499 241 96 22 chr4 32680166 32680302 -122949818 + B1_Mur1 SINE Alu 3 148 -1 2 834 558 125 0 0 chr4 32680305 32680385 -122949735 + B3 SINE B2 2 81 -135 2 834 2470 184 195 19 chr4 32680385 32681025 -122949095 + RMER19B LTR ERVK 1 688 -214 2 834 355 233 22 22 chr4 32681027 32681207 -122948913 + GA-rich Low_complexity Low_complexity 1 180 0 2 834 1163 61 0 13 chr4 32681374 32681524 -122948596 - B1_Mus1 SINE Alu 0 148 1 2 834 2548 126 27 5 chr4 32681524 32681931 -122948189 - MTC LTR MaLR -5 416 1 2 834 201 171 0 0 chr4 32682428 32682463 -122947657 + T-rich Low_complexity Low_complexity 1 35 0 2 834 1166 50 7 0 chr4 32682464 32682605 -122947515 - B1_Mm SINE Alu -1 146 5 2 834 2469 116 62 3 chr4 32682749 32683121 -122946999 - ORR1B1 LTR MaLR 0 394 1 2 834 744 191 7 0 chr4 32683535 32683676 -122946444 + B1_Mur2 SINE Alu 2 143 -6 2 834 213 325 24 8 chr4 32684497 32684624 -122945496 + CT-rich Low_complexity Low_complexity 1 129 0 2 834 277 245 58 96 chr4 32684671 32684775 -122945345 + RMER10A LTR ERVL 318 417 -25 2 834 603 177 61 17 chr4 32684847 32684962 -122945158 + B3A SINE B2 2 121 -77 2 834 617 250 7 20 chr4 32685404 32685555 -122944565 + B1_Mur2 SINE Alu 1 149 0 2 834 996 146 0 6 chr4 32685582 32685747 -122944373 + MTC LTR MaLR 1 164 -257 2 834 980 269 78 11 chr4 32686184 32686455 -122943665 - B4A SINE B4 0 292 4 2 834 1315 99 10 5 chr4 32686755 32686947 -122943173 - B2_Mm2 SINE B2 -1 194 2 2 834 378 216 99 55 chr4 32687489 32687670 -122942450 - B2_Mm2 SINE B2 -6 189 1 2 834 23 80 0 33 chr4 32687676 32687767 -122942353 + AT_rich Low_complexity Low_complexity 1 88 0 2 834 706 207 14 21 chr4 32690151 32690294 -122939826 - B1_Mm SINE Alu 0 147 6 2 834 2090 152 42 21 chr4 32690471 32690853 -122939267 - MTC LTR MaLR -8 413 24 2 834 21 0 0 0 chr4 32691756 32691777 -122938343 + AT_rich Low_complexity Low_complexity 1 21 0 2 834 845 109 13 1 chr4 32691787 32691933 -122938187 + B2_Mm2 SINE B2 2 159 -57 3 834 252 86 0 0 chr4 32691946 32691981 -122938139 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 834 502 239 0 13 chr4 32692252 32692409 -122937711 + (TA)n Simple_repeat Simple_repeat 2 156 0 3 834 623 241 35 0 chr4 32692592 32692737 -122937383 + B3 SINE B2 61 210 -6 3 834 31 26 0 0 chr4 32692739 32692777 -122937343 + AT_rich Low_complexity Low_complexity 1 38 0 3 834 2596 138 16 42 chr4 32692836 32693169 -122936951 - MTC LTR MaLR 0 421 99 3 834 1480 58 21 0 chr4 32693169 32693360 -122936760 - B2_Mm2 SINE B2 0 195 1 3 834 2596 138 16 42 chr4 32693360 32693458 -122936662 - MTC LTR MaLR -323 98 1 3 834 351 303 27 9 chr4 32693501 32693611 -122936509 - PB1D7 SINE Alu -8 112 1 3 834 52 17 0 0 chr4 32693701 32693760 -122936360 + AT_rich Low_complexity Low_complexity 1 59 0 3 834 1168 51 0 0 chr4 32695021 32695159 -122934961 + B1_Mus2 SINE Alu 2 139 -8 3 834 271 0 51 0 chr4 32695159 32695198 -122934922 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 834 266 146 0 127 chr4 32695245 32695308 -122934812 + RMER10A LTR ERVL 1 55 -387 3 834 339 299 107 31 chr4 32695299 32695523 -122934597 + RMER2 LTR ERV1 322 562 -5 3 834 647 128 9 0 chr4 32696232 32696341 -122933779 + (GGAGA)n Simple_repeat Simple_repeat 4 113 0 3 834 935 146 0 12 chr4 32697249 32697422 -122932698 + GA-rich Low_complexity Low_complexity 2 172 0 3 834 345 230 0 0 chr4 32697432 32697506 -122932614 + B3 SINE B2 9 82 -134 3 834 663 13 0 0 chr4 32697554 32697630 -122932490 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 834 366 42 0 0 chr4 32697632 32697680 -122932440 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 834 21 0 0 0 chr4 32697702 32697723 -122932397 + AT_rich Low_complexity Low_complexity 1 21 0 3 834 663 203 29 0 chr4 32698958 32699096 -122931024 + B1F SINE Alu 1 142 -7 3 834 558 108 0 0 chr4 32699126 32699209 -122930911 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 834 264 325 26 0 chr4 32699228 32699305 -122930815 + ID_B1 SINE B4 133 211 -13 3 834 709 252 67 38 chr4 32699337 32699547 -122930573 + B3 SINE B2 1 216 0 3 834 776 299 97 11 chr4 32699659 32699926 -122930194 - B4A SINE B4 0 292 3 3 834 1238 41 0 0 chr4 32699949 32700095 -122930025 - B1_Mus2 SINE Alu 0 147 2 3 834 663 255 36 36 chr4 32700274 32700441 -122929679 + Lx7 LINE L1 6424 6590 -1106 3 834 1659 247 97 19 chr4 32700871 32701346 -122928774 + Lx7 LINE L1 6573 7084 -612 3 834 395 281 24 66 chr4 32701381 32701594 -122928526 + Lx7 LINE L1 7175 7378 -318 3 834 312 27 0 0 chr4 32701714 32701751 -122928369 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 834 1204 41 0 0 chr4 32701766 32701912 -122928208 - B1_Mus2 SINE Alu -1 146 1 3 834 239 304 92 29 chr4 32703103 32703276 -122926844 + MIR SINE MIR 44 227 -35 3 834 197 260 66 94 chr4 32704042 32704148 -122925972 - L2a LINE L2 -1 3425 3323 3 834 1942 176 82 52 chr4 32704217 32704414 -122925706 - RMER6A LTR ERVK -2 754 385 3 834 333 47 0 0 chr4 32704414 32704457 -122925663 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 834 1942 137 52 101 chr4 32704457 32704794 -122925326 - RMER6A LTR ERVK -372 384 52 3 834 1216 41 7 0 chr4 32704794 32704940 -122925180 + B1_Mm SINE Alu 1 147 0 3 834 1942 137 52 101 chr4 32704940 32705009 -122925111 - RMER6A LTR ERVK -705 51 3 3 834 473 269 15 0 chr4 32705075 32705205 -122924915 + B1_Mus2 SINE Alu 6 137 -10 3 834 399 267 95 0 chr4 32705594 32705710 -122924410 + RSINE1 SINE B4 1 127 -38 3 834 286 159 68 0 chr4 32705724 32705812 -122924308 + (TA)n Simple_repeat Simple_repeat 2 95 0 3 834 1390 93 16 0 chr4 32707103 32707286 -122922834 + B2_Mm2 SINE B2 1 186 -9 3 834 23 0 0 0 chr4 32707465 32707488 -122922632 + AT_rich Low_complexity Low_complexity 1 23 0 3 834 820 181 23 0 chr4 32707491 32707624 -122922496 + B1_Mur4 SINE Alu 5 140 -10 3 834 276 213 0 0 chr4 32707867 32707914 -122922206 - ID SINE ID -170 54 8 3 834 490 266 70 0 chr4 32708124 32708267 -122921853 + MLT1D LTR MaLR 256 408 -97 3 834 617 224 66 15 chr4 32708485 32708621 -122921499 - B3 SINE B2 -1 215 73 3 834 420 67 0 0 chr4 32708887 32708947 -122921173 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 834 594 185 67 0 chr4 32709102 32709221 -122920899 + B1_Mus2 SINE Alu 10 136 -11 3 834 180 176 0 0 chr4 32709221 32709255 -122920865 + G-rich Low_complexity Low_complexity 1 34 0 3 834 185 65 0 31 chr4 32709264 32709296 -122920824 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 834 322 315 33 0 chr4 32709298 32709390 -122920730 - B1F2 SINE Alu -13 136 42 3 834 308 253 61 31 chr4 32709455 32709553 -122920567 - RSINE1 SINE B4 -61 104 4 3 834 431 262 48 19 chr4 32709594 32709699 -122920421 + RSINE1 SINE B4 46 153 -12 3 834 427 245 13 51 chr4 32709848 32710019 -122920101 - RSINE1 SINE B4 -2 163 4 3 834 315 0 0 0 chr4 32710036 32710071 -122920049 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3 834 228 333 13 39 chr4 32710071 32710093 -122920027 - ID4 SINE ID -4 79 7 3 834 240 260 0 57 chr4 32710093 32710146 -122919974 - tRNA-Ala-GCY_ tRNA tRNA -24 51 2 3 834 243 270 35 43 chr4 32710188 32710304 -122919816 - RSINE1 SINE B4 -7 158 44 3 834 1252 104 27 0 chr4 32710413 32710596 -122919524 + B2_Mm2 SINE B2 2 189 -6 3 834 195 39 0 0 chr4 32710789 32710796 -122919324 + (T)n Simple_repeat Simple_repeat 1 7 0 3 834 1276 20 0 0 chr4 32710796 32710943 -122919177 - B1_Mm SINE Alu 0 147 1 3 834 195 39 0 0 chr4 32710943 32710961 -122919159 + (T)n Simple_repeat Simple_repeat 1 18 0 3 834 386 289 50 0 chr4 32711506 32711627 -122918493 - PB1 SINE Alu 0 127 1 3 834 811 132 13 0 chr4 32711641 32711792 -122918328 + (TC)n Simple_repeat Simple_repeat 2 154 0 3 834 579 207 0 0 chr4 32711814 32711925 -122918195 - B3 SINE B2 0 216 106 3 834 848 139 7 27 chr4 32712090 32712238 -122917882 - B1_Mur4 SINE Alu 0 150 6 3 834 305 219 0 167 chr4 32712135 32712261 -122917859 - MT2B LTR ERVL -344 257 153 3 834 262 267 99 11 chr4 32712311 32712402 -122917718 + PB1D10 SINE Alu 3 101 -16 3 834 270 254 34 0 chr4 32712528 32712587 -122917533 - ID SINE ID -162 62 2 3 834 219 69 0 0 chr4 32712659 32712688 -122917432 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 834 944 259 119 24 chr4 32712763 32713151 -122916969 - Lx9 LINE L1 -188 7456 6904 3 834 818 169 0 21 chr4 32713318 32713448 -122916672 + B1_Mus1 SINE Alu 6 135 -13 3 834 219 36 0 0 chr4 32713448 32713476 -122916644 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 834 818 169 0 21 chr4 32713476 32713490 -122916630 + B1_Mus1 SINE Alu 136 147 -1 3 834 21 57 0 0 chr4 32713516 32713551 -122916569 + AT_rich Low_complexity Low_complexity 1 35 0 3 834 306 106 0 0 chr4 32713579 32713626 -122916494 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 834 621 220 131 0 chr4 32713626 32713794 -122916326 - B3 SINE B2 -18 198 9 3 834 376 234 26 0 chr4 32713942 32714019 -122916101 - ID4 SINE ID -2 81 3 3 834 252 0 0 0 chr4 32714383 32714411 -122915709 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 834 873 49 8 0 chr4 32714411 32714525 -122915595 - B1_Mus2 SINE Alu -7 140 26 3 834 697 215 49 93 chr4 32714615 32714841 -122915279 - B3 SINE B2 0 216 1 3 834 499 110 12 0 chr4 32715028 32715110 -122915010 - B1_Mus2 SINE Alu 0 147 65 3 834 323 268 286 0 chr4 32715122 32715234 -122914886 - B1_Mm SINE Alu -2 145 2 3 834 500 158 288 34 chr4 32715244 32715362 -122914758 - B1_Mur2 SINE Alu 0 149 2 3 834 411 73 0 0 chr4 32715817 32715872 -122914248 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 3 834 710 251 66 0 chr4 32715872 32716039 -122914081 - B3 SINE B2 -4 212 35 3 834 792 253 23 0 chr4 32716155 32716329 -122913791 - B3A SINE B2 -20 178 1 3 834 558 269 115 9 chr4 32716376 32716562 -122913558 - B3A SINE B2 -12 204 1 3 834 253 288 0 0 chr4 32716664 32716693 -122913427 + T-rich Low_complexity Low_complexity 45 73 0 3 834 1122 68 0 20 chr4 32716693 32716843 -122913277 - B1_Mus1 SINE Alu 0 148 2 3 834 253 288 0 0 chr4 32716843 32716886 -122913234 + T-rich Low_complexity Low_complexity 2 44 0 3 834 571 118 200 8 chr4 32716887 32717007 -122913113 - B1_Mus1 SINE Alu 0 148 6 3 834 264 241 46 0 chr4 32718552 32718639 -122911481 + PB1D10 SINE Alu 14 104 -13 3 834 879 303 36 7 chr4 32718903 32719179 -122910941 - B4 SINE B4 -4 288 5 3 834 2270 160 164 2 chr4 32719198 32719625 -122910495 + RLTR19 LTR ERVK 1 496 -3 3 834 323 268 12 24 chr4 32719696 32719780 -122910340 + PB1 SINE Alu 25 107 -20 3 834 1028 101 0 20 chr4 32719799 32719950 -122910170 - B1_Mur4 SINE Alu 0 150 3 3 834 445 68 0 0 chr4 32720015 32720074 -122910046 + B1_Mus2 SINE Alu 44 102 -45 3 834 401 244 12 0 chr4 32720068 32720154 -122909966 + B3 SINE B2 44 130 -86 3 834 565 241 51 0 chr4 32720629 32720766 -122909354 - B1_Mur1 SINE Alu -5 144 1 3 834 994 71 14 0 chr4 32720815 32720955 -122909165 + B1_Mus2 SINE Alu 6 147 0 3 834 389 270 109 16 chr4 32721190 32721318 -122908802 - ID_B1 SINE B4 -1 223 84 3 834 624 177 62 0 chr4 32721206 32721319 -122908801 - B1_Mur2 SINE Alu -28 121 2 3 834 303 219 141 30 chr4 32721557 32721656 -122908464 + PB1D10 SINE Alu 1 110 -7 3 834 254 281 40 30 chr4 32722203 32722302 -122907818 + RSINE1 SINE B4 12 111 -54 3 834 202 146 54 18 chr4 32722573 32722615 -122907505 + T-rich Low_complexity Low_complexity 15 59 0 4 834 1298 34 7 0 chr4 32722615 32722761 -122907359 - B1_Mus1 SINE Alu -1 147 1 4 834 202 146 54 18 chr4 32722761 32722774 -122907346 + T-rich Low_complexity Low_complexity 3 14 0 4 834 210 271 229 18 chr4 32722980 32723089 -122907031 - B3 SINE B2 -84 132 1 4 834 363 235 146 12 chr4 32723008 32723090 -122907030 - RSINE1 SINE B4 -71 94 2 4 834 577 240 144 12 chr4 32723346 32723519 -122906601 - B3A SINE B2 0 198 3 4 834 813 211 16 39 chr4 32724346 32724359 -122905761 - B3 SINE B2 -38 178 168 4 834 300 27 0 0 chr4 32724359 32724396 -122905724 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 834 813 211 16 39 chr4 32724396 32724564 -122905556 - B3 SINE B2 -49 167 1 4 834 461 256 59 17 chr4 32724915 32725034 -122905086 - B1_Mur1 SINE Alu -25 124 1 4 834 337 254 45 83 chr4 32725294 32725427 -122904693 + RSINE1 SINE B4 38 165 0 4 834 352 309 0 0 chr4 32725700 32725781 -122904339 - ID4 SINE ID -2 81 1 4 834 231 219 52 155 chr4 32725818 32725915 -122904205 - MLT1C LTR MaLR -380 87 1 4 834 246 293 17 0 chr4 32726112 32726170 -122903950 - ID4 SINE ID -23 60 2 4 834 339 25 0 0 chr4 32726199 32726239 -122903881 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 834 359 277 42 114 chr4 32728623 32728790 -122901330 - RSINE1 SINE B4 0 165 11 4 834 625 258 161 0 chr4 32728795 32728981 -122901139 - B3 SINE B2 0 216 1 4 834 1210 56 7 0 chr4 32729077 32729220 -122900900 + B1_Mus2 SINE Alu 3 146 -1 4 834 488 231 45 58 chr4 32729404 32729560 -122900560 - Lx7 LINE L1 -365 7331 7178 4 834 755 270 176 21 chr4 32729752 32729990 -122900130 - B4A SINE B4 -17 275 1 4 834 189 107 0 0 chr4 32730135 32730163 -122899957 + (CATA)n Simple_repeat Simple_repeat 1 28 0 4 834 588 239 130 0 chr4 32733721 32733859 -122896261 + B3A SINE B2 2 157 -41 4 834 612 195 16 48 chr4 32734036 32734160 -122895960 - PB1D9 SINE Alu 0 120 1 4 834 238 180 80 0 chr4 32734180 32734230 -122895890 - B1_Mus2 SINE Alu -51 96 43 4 834 232 262 77 20 chr4 32734421 32734518 -122895602 + B1_Mus2 SINE Alu 2 109 -11 4 834 24 37 0 53 chr4 32734564 32734592 -122895528 + AT_rich Low_complexity Low_complexity 1 27 0 4 834 477 91 65 0 chr4 32734592 32734669 -122895451 - L1Md_F2 LINE L1 -1 6581 6500 4 834 24 37 0 53 chr4 32734669 32734697 -122895423 + AT_rich Low_complexity Low_complexity 1 27 0 4 834 1153 82 0 40 chr4 32735494 32735646 -122894474 + B1_Mus2 SINE Alu 2 147 0 4 834 189 147 0 0 chr4 32735646 32735680 -122894440 + (A)n Simple_repeat Simple_repeat 1 34 0 4 834 592 279 63 17 chr4 32735839 32736014 -122894106 - ID_B1 SINE B4 -41 183 1 4 834 332 292 0 0 chr4 32736450 32736515 -122893605 - ID2 SINE ID -11 72 8 4 834 455 235 25 34 chr4 32736620 32736739 -122893381 - B1_Mur2 SINE Alu -16 133 16 4 834 684 284 65 0 chr4 32736778 32736933 -122893187 - B3 SINE B2 -14 202 38 4 834 667 197 29 0 chr4 32736940 32737077 -122893043 - B1_Mur4 SINE Alu -1 149 9 4 834 276 91 11 0 chr4 32737074 32737123 -122892997 - B3A SINE B2 -142 53 2 4 834 674 245 46 61 chr4 32737386 32737582 -122892538 - B3A SINE B2 0 198 6 4 834 584 273 42 0 chr4 32737683 32737826 -122892294 + B1F1 SINE Alu 1 149 0 4 834 213 321 24 0 chr4 32737894 32737978 -122892142 + B2_Mm1t SINE B2 1 86 -107 4 834 587 248 47 0 chr4 32737904 32738033 -122892087 + RSINE1 SINE B4 12 146 -19 4 834 1267 98 64 0 chr4 32738100 32738273 -122891847 + B2_Mm1t SINE B2 1 184 -9 4 834 722 225 8 8 chr4 32738563 32738693 -122891427 + B3 SINE B2 1 130 -86 4 834 318 295 63 54 chr4 32738863 32738974 -122891146 + ID_B1 SINE B4 93 204 -20 4 834 383 305 0 50 chr4 32739113 32739213 -122890907 + B1F SINE Alu 19 113 -7 4 834 762 156 85 43 chr4 32739459 32739600 -122890520 + B1_Mur3 SINE Alu 3 149 0 4 834 1144 88 0 20 chr4 32740356 32740506 -122889614 - B1_Mus2 SINE Alu 0 147 1 4 834 583 238 158 29 chr4 32741179 32741510 -122888610 - MTC LTR MaLR 0 396 1 4 834 377 248 65 130 chr4 32741510 32741565 -122888555 + B3 SINE B2 34 87 -129 4 834 950 177 7 0 chr4 32741565 32741712 -122888408 + B1_Mus1 SINE Alu 1 148 0 4 834 377 248 65 130 chr4 32741712 32741835 -122888285 + B3 SINE B2 88 200 -16 4 834 550 264 70 0 chr4 32741838 32741967 -122888153 + B1_Mur2 SINE Alu 12 149 0 4 834 1138 82 0 0 chr4 32742200 32742335 -122887785 + B1_Mus1 SINE Alu 2 136 -12 4 834 396 155 0 0 chr4 32742343 32742414 -122887706 + A-rich Low_complexity Low_complexity 1 71 0 4 834 1167 90 21 0 chr4 32742773 32742918 -122887202 - B1_Mus1 SINE Alu 0 148 1 4 834 897 132 35 7 chr4 32743234 32743379 -122886741 + B1_Mur3 SINE Alu 1 149 0 4 834 464 261 0 42 chr4 32743393 32743513 -122886607 - B3A SINE B2 -17 181 67 4 834 262 277 0 30 chr4 32743704 32743771 -122886349 - RSINE1 SINE B4 -99 66 2 4 834 37 0 0 0 chr4 32744763 32744800 -122885320 + AT_rich Low_complexity Low_complexity 1 37 0 4 834 1036 96 70 0 chr4 32745056 32745212 -122884908 + URR1B DNA MER1_type 59 225 0 4 834 355 248 224 32 chr4 32745345 32745470 -122884650 - B1_Mur2 SINE Alu 0 149 1 4 834 1239 68 0 0 chr4 32745631 32745778 -122884342 - B1_Mus1 SINE Alu 0 148 2 4 834 467 324 35 14 chr4 32745783 32745924 -122884196 - ID_B1 SINE B4 -2 222 79 4 834 240 245 19 0 chr4 32746063 32746116 -122884004 - B3A SINE B2 -47 151 98 4 834 1205 69 14 0 chr4 32746201 32746346 -122883774 - B1_Mus2 SINE Alu 0 147 1 4 834 445 208 98 10 chr4 32746998 32747100 -122883020 - PB1D10 SINE Alu -6 111 1 4 834 220 257 137 41 chr4 32747601 32747674 -122882446 - ID SINE ID -143 81 2 4 834 360 291 58 0 chr4 32747686 32747789 -122882331 - PB1 SINE Alu -4 123 15 4 834 864 224 122 105 chr4 32748084 32748253 -122881867 - MTE2b LTR MaLR 0 379 192 4 834 1276 62 0 0 chr4 32748253 32748399 -122881721 - B1_Mm SINE Alu 0 147 2 4 834 864 224 122 105 chr4 32748399 32748599 -122881521 - MTE2b LTR MaLR -188 191 4 4 834 432 249 182 6 chr4 32748993 32749163 -122880957 - Tigger5 DNA MER2_type -10 2396 2197 4 834 1147 75 0 20 chr4 32749174 32749323 -122880797 + B1_Mus2 SINE Alu 1 146 -1 4 834 326 42 21 0 chr4 32750162 32750210 -122879910 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 4 834 585 171 126 17 chr4 32750218 32750337 -122879783 - B2_Mm2 SINE B2 -63 132 1 4 834 233 135 19 37 chr4 32750339 32750393 -122879727 + T-rich Low_complexity Low_complexity 2 54 0 4 834 506 185 65 0 chr4 32750424 32750532 -122879588 - RSINE1 SINE B4 -40 125 11 4 834 243 176 110 98 chr4 32750459 32750541 -122879579 - B2_Mm1t SINE B2 -107 86 4 4 834 231 329 12 25 chr4 32750554 32750635 -122879485 - B1F1 SINE Alu -69 80 1 4 834 256 218 36 0 chr4 32750870 32750925 -122879195 - B1_Mus2 SINE Alu -70 77 21 4 834 1359 97 32 0 chr4 32750932 32751117 -122879003 + B2_Mm2 SINE B2 2 192 -3 4 834 418 200 171 9 chr4 32751286 32751397 -122878723 - Lx8 LINE L1 -326 7147 7019 4 834 192 143 0 0 chr4 32751727 32751738 -122878382 + (A)n Simple_repeat Simple_repeat 1 11 0 4 834 1211 81 0 0 chr4 32751738 32751886 -122878234 + B1_Mus1 SINE Alu 1 148 0 4 834 192 143 0 0 chr4 32751886 32751909 -122878211 + (A)n Simple_repeat Simple_repeat 1 23 0 4 834 21 0 0 0 chr4 32752261 32752282 -122877838 + AT_rich Low_complexity Low_complexity 1 21 0 4 834 243 298 0 17 chr4 32752282 32752340 -122877780 - PB1D10 SINE Alu -39 78 22 4 834 239 290 22 30 chr4 32752470 32752605 -122877515 - L1M3 LINE L1 -3085 3055 2922 4 834 339 25 0 0 chr4 32752608 32752648 -122877472 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 834 664 213 8 0 chr4 32753692 32753814 -122876306 - B3 SINE B2 -92 124 2 4 834 379 246 26 26 chr4 32755023 32755140 -122874980 - B3 SINE B2 0 216 100 4 834 277 122 338 39 chr4 32755295 32755372 -122874748 + PB1D9 SINE Alu 21 120 0 4 834 871 235 10 47 chr4 32755368 32755560 -122874560 + B3 SINE B2 27 211 -5 4 834 188 34 0 33 chr4 32756187 32756217 -122873903 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 834 1264 41 21 0 chr4 32756217 32756362 -122873758 - B1_Mus1 SINE Alu 0 148 1 4 834 302 274 98 0 chr4 32757916 32758018 -122872102 + MER44B DNA MER2_type 2 113 -437 4 834 1279 41 0 14 chr4 32758019 32758167 -122871953 + B1_Mus2 SINE Alu 2 147 0 4 834 1045 63 0 27 chr4 32758813 32758828 -122871292 - B1_Mus1 SINE Alu 0 148 136 4 834 210 37 0 0 chr4 32758828 32758855 -122871265 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 4 834 1045 63 0 27 chr4 32758855 32758986 -122871134 - B1_Mus1 SINE Alu -13 135 6 4 834 802 227 0 0 chr4 32759025 32759166 -122870954 - B1_Mur4 SINE Alu -5 145 5 4 834 192 125 0 0 chr4 32760245 32760277 -122869843 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 4 834 301 269 124 41 chr4 32760302 32760399 -122869721 - PB1D10 SINE Alu -10 107 3 4 834 872 67 0 8 chr4 32760526 32760647 -122869473 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 4 834 393 95 143 0 chr4 32760648 32760711 -122869409 - B1_Mur4 SINE Alu -14 136 65 4 834 1132 78 7 0 chr4 32761537 32761678 -122868442 - B1_Mus1 SINE Alu -6 142 1 4 834 506 307 0 0 chr4 32761741 32761868 -122868252 - B3A SINE B2 -70 128 2 5 834 1202 261 40 33 chr4 32763136 32763465 -122866655 - MTE2a LTR MaLR -6 373 43 5 834 27 49 0 0 chr4 32764255 32764296 -122865824 + AT_rich Low_complexity Low_complexity 1 41 0 5 834 1213 68 0 0 chr4 32764296 32764443 -122865677 - B1_Mm SINE Alu 0 147 1 5 834 237 213 72 96 chr4 32764549 32764632 -122865488 - RSINE1 SINE B4 -84 81 1 5 834 243 0 0 0 chr4 32764861 32764888 -122865232 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 834 1175 71 0 0 chr4 32764905 32765046 -122865074 - B1_Mus1 SINE Alu -6 142 2 5 834 370 297 20 10 chr4 32765500 32765602 -122864518 - PB1D7 SINE Alu -17 103 1 5 834 238 242 80 84 chr4 32765844 32765924 -122864196 - PB1D7 SINE Alu -21 96 20 5 834 749 178 104 0 chr4 32766080 32766215 -122863905 - B1_Mur4 SINE Alu -1 149 1 5 834 316 205 71 12 chr4 32766356 32766440 -122863680 - B1_Mur4 SINE Alu -1 149 61 5 834 333 195 91 0 chr4 32766707 32766784 -122863336 - B1F2 SINE Alu -1 148 65 5 834 365 305 48 85 chr4 32766815 32766980 -122863140 - RSINE1 SINE B4 0 165 7 5 834 472 270 9 0 chr4 32767607 32767718 -122862402 - PB1D10 SINE Alu 0 117 6 5 835 736 145 6 127 chr4 32769336 32769502 -122860618 - URR1A DNA MER1_type 0 226 81 5 835 227 220 60 0 chr4 32770131 32770181 -122859939 - Lx8 LINE L1 -598 6875 6823 5 835 216 261 109 67 chr4 32770936 32771055 -122859065 + MIR SINE MIR 112 235 -27 5 835 280 246 75 85 chr4 32771176 32771358 -122858762 - ORR1D2 LTR MaLR -35 344 157 5 835 305 245 265 0 chr4 32771335 32771433 -122858687 - RSINE1 SINE B4 -38 127 4 5 835 250 227 23 6 chr4 32772224 32772331 -122857789 - B1_Mur2 SINE Alu 0 150 34 5 835 225 0 0 0 chr4 32773136 32773161 -122856959 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 5 835 1397 68 15 69 chr4 32773512 32773716 -122856404 - B2_Mm2 SINE B2 0 195 3 5 835 520 306 0 8 chr4 32773999 32774121 -122855999 + RSINE1 SINE B4 2 122 -43 5 835 24 67 0 0 chr4 32774205 32774250 -122855870 + AT_rich Low_complexity Low_complexity 1 45 0 5 835 464 229 31 10 chr4 32774312 32774409 -122855711 - B1_Mur2 SINE Alu -2 147 49 5 835 2683 210 184 46 chr4 32774410 32775726 -122854394 - L1_Rod LINE L1 -3343 2504 973 5 835 1127 108 0 13 chr4 32775726 32775876 -122854244 - B1_Mus1 SINE Alu 0 148 1 5 835 1673 212 163 63 chr4 32775876 32776162 -122853958 - L1_Rod LINE L1 -6636 972 675 5 835 1045 183 19 19 chr4 32776186 32776392 -122853728 - URR1B DNA MER1_type -13 212 7 5 835 1155 99 26 62 chr4 32776743 32776936 -122853184 + B2_Mm2 SINE B2 2 187 -8 5 835 646 111 0 0 chr4 32777975 32778065 -122852055 + B1_Mur3 SINE Alu 58 147 -2 5 835 679 144 96 0 chr4 32778454 32778579 -122851541 + B1_Mus2 SINE Alu 11 147 0 5 835 991 105 20 0 chr4 32778819 32778971 -122851149 - B2_Mm2 SINE B2 0 195 41 5 835 1888 178 75 11 chr4 32778978 32779337 -122850783 - ORR1C2 LTR MaLR -2 382 1 5 835 606 191 463 15 chr4 32779654 32779930 -122850190 - MTD LTR MaLR 0 419 1 5 835 221 0 35 0 chr4 32780252 32780281 -122849839 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 835 216 0 0 0 chr4 32780905 32780929 -122849191 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 835 486 263 74 25 chr4 32781234 32781355 -122848765 + B1_Mur1 SINE Alu 17 143 -6 5 835 1236 68 0 0 chr4 32781826 32781972 -122848148 + B1_Mus2 SINE Alu 2 147 0 5 835 35 0 0 0 chr4 32781972 32782007 -122848113 + AT_rich Low_complexity Low_complexity 1 35 0 5 835 903 63 31 16 chr4 32782632 32782761 -122847359 - B1_Mm SINE Alu 0 147 17 5 835 250 276 110 7 chr4 32782862 32783008 -122847112 - Lx9 LINE L1 -39 7605 7445 5 835 612 0 0 0 chr4 32783023 32783091 -122847029 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 835 438 266 104 8 chr4 32783882 32784007 -122846113 + RSINE1 SINE B4 4 140 -25 5 835 2510 258 146 33 chr4 32784274 32785460 -122844660 - Lx8 LINE L1 -96 7377 6058 5 835 360 0 0 0 chr4 32786669 32786709 -122843411 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 835 581 263 36 7 chr4 32788096 32788234 -122841886 - B4A SINE B4 -9 283 142 5 835 215 296 0 0 chr4 32788326 32788380 -122841740 - B1F SINE Alu -69 80 27 5 835 955 286 34 104 chr4 32789856 32789893 -122840227 + RCHARR1 DNA MER1_type 14 42 -932 5 835 1387 107 16 0 chr4 32789893 32790080 -122840040 + B2_Mm2 SINE B2 1 190 -5 5 835 955 286 34 104 chr4 32790080 32790397 -122839723 + RCHARR1 DNA MER1_type 43 343 -631 5 835 2898 53 0 3 chr4 32790936 32791277 -122838843 + L1Md_T LINE L1 6243 6582 0 5 835 342 322 78 50 chr4 32791902 32792183 -122837937 - B4A SINE B4 -2 290 2 5 835 1105 152 17 6 chr4 32792313 32792492 -122837628 - B2_Mm2 SINE B2 -1 194 14 5 835 353 242 0 0 chr4 32792502 32792568 -122837552 - B1_Mus2 SINE Alu -19 128 63 5 835 393 22 0 0 chr4 32792696 32792742 -122837378 + (TATG)n Simple_repeat Simple_repeat 3 48 0 5 835 357 24 0 0 chr4 32792742 32792784 -122837336 + (CATA)n Simple_repeat Simple_repeat 1 42 0 5 835 279 325 96 0 chr4 32793081 32793164 -122836956 - PB1D10 SINE Alu -25 92 2 5 835 1038 282 123 27 chr4 32793523 32793888 -122836232 - MTD LTR MaLR 0 419 20 5 835 1193 96 0 0 chr4 32794761 32794907 -122835213 - B1_Mus1 SINE Alu -2 146 1 5 835 500 316 79 0 chr4 32794959 32795098 -122835022 + RSINE1 SINE B4 5 154 -11 5 835 830 80 0 34 chr4 32797596 32797713 -122832407 + B2_Mm2 SINE B2 1 113 -82 5 835 788 295 5 37 chr4 32798420 32798638 -122831482 + B3 SINE B2 1 211 -5 5 835 22 0 0 0 chr4 32798648 32798670 -122831450 + AT_rich Low_complexity Low_complexity 1 22 0 5 835 716 211 14 34 chr4 32799318 32799465 -122830655 + B1_Mur1 SINE Alu 6 149 0 5 835 828 222 87 31 chr4 32799703 32799898 -122830222 + B3 SINE B2 4 209 -7 5 835 389 296 59 25 chr4 32801200 32801318 -122828802 - PB1 SINE Alu -2 125 4 5 835 1056 215 14 37 chr4 32802093 32802310 -122827810 - B3 SINE B2 -2 214 3 5 835 294 272 57 19 chr4 32802381 32802486 -122827634 - B1F SINE Alu -19 130 22 5 835 539 264 29 162 chr4 32804437 32804854 -122825266 - BGLII_B LTR ERVK -27 414 54 5 835 220 266 51 0 chr4 32806383 32806462 -122823658 - L2a LINE L2 -22 3404 3322 5 835 184 306 66 8 chr4 32806566 32806688 -122823432 - L2a LINE L2 -811 2608 2480 5 835 1605 197 153 19 chr4 32806797 32807164 -122822956 + MTD LTR MaLR 1 416 -3 5 835 498 316 83 0 chr4 32807295 32807463 -122822657 + B3A SINE B2 1 182 -16 5 835 528 235 118 6 chr4 32808130 32808287 -122821833 + B3A SINE B2 10 182 -34 5 835 339 164 0 0 chr4 32808289 32808350 -122821770 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 835 248 239 80 27 chr4 32808353 32808465 -122821655 - Lx9 LINE L1 -127 7517 7400 5 835 380 236 127 12 chr4 32809040 32809176 -122820944 - B3 SINE B2 -38 155 2 5 835 768 52 259 9 chr4 32809520 32809636 -122820484 + B1_Mus2 SINE Alu 3 147 0 5 835 610 176 0 27 chr4 32811054 32811165 -122818955 - PB1D9 SINE Alu -1 119 12 5 835 263 257 8 125 chr4 32811068 32811188 -122818932 - MT2B LTR ERVL -339 262 157 5 835 341 260 109 10 chr4 32811328 32811429 -122818691 + B4 SINE B4 107 217 -75 5 835 817 196 35 7 chr4 32811504 32811648 -122818472 + B1_Mur4 SINE Alu 3 150 0 5 835 695 167 93 7 chr4 32812447 32812586 -122817534 + B2_Mm2 SINE B2 1 151 -44 5 835 192 77 0 0 chr4 32812589 32812615 -122817505 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 5 835 310 181 193 0 chr4 32814325 32814408 -122815712 + MTD LTR MaLR 8 106 -313 5 835 297 146 77 11 chr4 32814409 32814491 -122815629 + MTD LTR MaLR 320 413 -8 5 835 628 268 191 6 chr4 32814572 32814745 -122815375 - B3 SINE B2 -11 205 1 5 835 22 35 0 0 chr4 32814920 32814949 -122815171 + AT_rich Low_complexity Low_complexity 1 29 0 5 835 278 291 20 30 chr4 32815184 32815295 -122814825 - L1ME2 LINE L1 -83 6251 6163 5 835 1716 189 52 38 chr4 32815367 32815736 -122814384 - ORR1D1 LTR MaLR 0 374 1 5 835 343 279 128 0 chr4 32815741 32815913 -122814207 - L1ME2 LINE L1 -311 5853 5660 5 835 345 281 223 15 chr4 32815952 32816226 -122813894 - Charlie1a DNA MER1_type -11 1444 1114 5 835 593 200 67 0 chr4 32816450 32816555 -122813565 - PB1D7 SINE Alu -7 113 2 5 835 330 243 40 0 chr4 32819477 32819551 -122810569 - B1_Mur1 SINE Alu 0 149 73 5 835 231 61 0 0 chr4 32820056 32820089 -122810031 + (T)n Simple_repeat Simple_repeat 1 33 0 5 835 793 175 80 0 chr4 32820815 32820952 -122809168 - B1_Mur3 SINE Alu 0 149 2 5 835 240 111 0 0 chr4 32821596 32821632 -122808488 + (A)n Simple_repeat Simple_repeat 1 36 0 5 835 355 268 133 85 chr4 32821641 32821829 -122808291 + B3A SINE B2 2 198 0 5 835 453 181 89 62 chr4 32821857 32821969 -122808151 + B1_Mur4 SINE Alu 2 116 -34 5 835 686 217 26 59 chr4 32823032 32823184 -122806936 - B1F1 SINE Alu -2 147 1 5 835 1169 141 32 5 chr4 32823670 32823856 -122806264 - B2_Mm2 SINE B2 -3 192 2 5 835 755 269 6 18 chr4 32824160 32824330 -122805790 + B3 SINE B2 35 202 -14 5 835 984 122 6 58 chr4 32824447 32824603 -122805517 + B1_Mur4 SINE Alu 3 150 0 5 835 23 0 0 0 chr4 32824609 32824632 -122805488 + AT_rich Low_complexity Low_complexity 1 23 0 5 835 397 276 0 30 chr4 32824645 32824746 -122805374 + ID_B1 SINE B4 107 204 -20 6 835 459 95 0 0 chr4 32824746 32824820 -122805300 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 6 835 593 273 75 5 chr4 32824826 32825014 -122805106 + B3 SINE B2 1 201 -15 6 835 333 190 0 51 chr4 32825113 32825199 -122804921 - B1F1 SINE Alu 0 149 43 6 835 225 0 0 0 chr4 32827325 32827350 -122802770 + (T)n Simple_repeat Simple_repeat 1 25 0 6 835 21 0 0 0 chr4 32828270 32828291 -122801829 + AT_rich Low_complexity Low_complexity 1 21 0 6 835 262 261 20 71 chr4 32830987 32831086 -122799034 + RSINE1 SINE B4 3 96 -69 6 835 272 301 37 46 chr4 32831089 32831197 -122798923 - B1_Mus2 SINE Alu -35 112 6 6 835 231 36 0 0 chr4 32831221 32831249 -122798871 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 835 495 0 0 0 chr4 32831293 32831348 -122798772 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 835 300 226 16 0 chr4 32831905 32831967 -122798153 - PB1 SINE Alu -19 108 46 6 835 429 184 122 0 chr4 32831978 32832076 -122798044 + B3 SINE B2 107 216 0 6 835 583 289 31 31 chr4 32832743 32832936 -122797184 - B3A SINE B2 0 198 6 6 835 297 318 68 0 chr4 32833210 32833298 -122796822 - PB1D10 SINE Alu -23 94 1 6 835 234 278 76 85 chr4 32833298 32833341 -122796779 - MT2B LTR ERVL -437 164 123 6 835 516 156 236 9 chr4 32833839 32833949 -122796171 - B1_Mus1 SINE Alu -6 142 8 6 835 238 182 51 68 chr4 32833904 32833963 -122796157 - B4A SINE B4 -156 136 79 6 835 1678 16 11 0 chr4 32834146 32834336 -122795784 + B2_Mm1a SINE B2 2 193 0 6 835 652 202 208 0 chr4 32835261 32835434 -122794686 + B3 SINE B2 1 209 -7 6 835 189 0 0 0 chr4 32837646 32837667 -122792453 + (T)n Simple_repeat Simple_repeat 1 21 0 6 835 493 278 0 0 chr4 32838787 32838895 -122791225 + B1F SINE Alu 36 143 -6 6 835 208 297 0 98 chr4 32839570 32839652 -122790468 + MIRb SINE MIR 8 81 -187 6 835 351 351 114 0 chr4 32840157 32840271 -122789849 + RSINE1 SINE B4 25 151 -14 6 835 249 33 0 0 chr4 32840279 32840309 -122789811 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 835 1386 85 37 0 chr4 32840416 32840604 -122789516 + B2_Mm2 SINE B2 1 195 0 6 835 1079 155 0 22 chr4 32840725 32840910 -122789210 + B2_Mm2 SINE B2 1 181 -14 6 835 1397 78 5 30 chr4 32841720 32841918 -122788202 - B2_Mm1a SINE B2 0 193 1 6 835 24 32 0 0 chr4 32842264 32842295 -122787825 + AT_rich Low_complexity Low_complexity 1 31 0 6 835 413 241 94 9 chr4 32842380 32842539 -122787581 - B3 SINE B2 -9 186 1 6 835 460 246 6 76 chr4 32842751 32842909 -122787211 - B1_Mus1 SINE Alu 0 148 2 6 835 1179 75 0 0 chr4 32842936 32843082 -122787038 - B1_Mus1 SINE Alu -1 147 2 6 835 195 69 0 0 chr4 32843779 32843808 -122786312 + (T)n Simple_repeat Simple_repeat 1 29 0 6 835 224 265 0 0 chr4 32843868 32843917 -122786203 + MIRc SINE MIR 15 63 -205 6 835 336 291 0 25 chr4 32845621 32845702 -122784418 + PB1D10 SINE Alu 1 79 -38 6 835 1355 61 44 6 chr4 32846886 32847068 -122783052 + B2_Mm1a SINE B2 1 189 -4 6 835 298 254 0 17 chr4 32847220 32847280 -122782840 + B4 SINE B4 1 59 -233 6 835 1368 60 16 16 chr4 32847346 32847532 -122782588 + B2_Mm1t SINE B2 2 187 -6 6 835 315 104 0 0 chr4 32847802 32847850 -122782270 + (GGA)n Simple_repeat Simple_repeat 1 48 0 6 835 203 348 118 65 chr4 32848775 32848944 -122781176 - MIRc SINE MIR -8 254 77 6 835 422 258 144 48 chr4 32849414 32849581 -122780539 + B3A SINE B2 4 186 -12 6 835 484 326 7 14 chr4 32849849 32849989 -122780131 + ID_B1 SINE B4 79 217 -7 6 835 1684 31 0 0 chr4 32850990 32851183 -122778937 + B2_Mm1a SINE B2 1 193 0 6 835 502 277 157 66 chr4 32851188 32851202 -122778918 + ID SINE ID 27 40 -184 6 835 1316 82 60 0 chr4 32851202 32851385 -122778735 + B2_Mm2 SINE B2 2 195 0 6 835 502 277 157 66 chr4 32851385 32851536 -122778584 + ID_B1 SINE B4 41 207 -17 6 835 441 0 0 0 chr4 32851554 32851603 -122778517 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 835 1097 77 28 0 chr4 32852928 32853071 -122777049 - B1_Mus2 SINE Alu 0 147 1 6 835 468 0 0 0 chr4 32853339 32853391 -122776729 + (TGG)n Simple_repeat Simple_repeat 2 53 0 6 835 542 240 139 45 chr4 32853476 32853677 -122776443 - B4 SINE B4 -69 223 4 6 835 414 100 0 0 chr4 32855129 32855189 -122774931 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 835 22 35 0 0 chr4 32855529 32855558 -122774562 + AT_rich Low_complexity Low_complexity 1 29 0 6 835 189 0 0 0 chr4 32856082 32856103 -122774017 + (T)n Simple_repeat Simple_repeat 1 21 0 6 835 1250 61 0 0 chr4 32856103 32856250 -122773870 - B1_Mm SINE Alu 0 147 1 6 835 191 272 82 47 chr4 32856273 32856358 -122773762 + MIR SINE MIR 137 224 -38 6 835 719 239 70 10 chr4 32857375 32857574 -122772546 - B3 SINE B2 -4 212 2 6 835 841 179 7 0 chr4 32857600 32857740 -122772380 - B1_Mus2 SINE Alu -2 145 5 6 835 1555 42 16 0 chr4 32858572 32858761 -122771359 + B2_Mm1a SINE B2 2 193 0 6 835 953 227 58 71 chr4 32858956 32859250 -122770870 - B4A SINE B4 -2 290 1 6 835 1257 108 43 0 chr4 32859636 32859821 -122770299 + B2_Mm2 SINE B2 1 193 -2 6 835 195 100 0 0 chr4 32862186 32862216 -122767904 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 6 835 221 254 73 0 chr4 32862772 32862827 -122767293 + B1_Mur4 SINE Alu 6 64 -86 6 835 207 0 0 0 chr4 32863416 32863439 -122766681 + (T)n Simple_repeat Simple_repeat 1 23 0 6 835 1471 74 5 0 chr4 32863648 32863837 -122766283 - B2_Mm1t SINE B2 -2 191 2 6 835 212 167 0 0 chr4 32863855 32863897 -122766223 + (ACTG)n Simple_repeat Simple_repeat 1 42 0 6 835 468 0 0 0 chr4 32864432 32864484 -122765636 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 835 1143 55 14 0 chr4 32864505 32864651 -122765469 - B1_Mus1 SINE Alu 0 148 1 6 835 1681 194 151 66 chr4 32864745 32865308 -122764812 + RMER19C LTR ERVK 1 611 0 6 835 1430 79 11 0 chr4 32865518 32865708 -122764412 + B2_Mm1t SINE B2 2 193 0 6 835 1080 82 80 23 chr4 32865723 32865898 -122764222 + B2_Mm2 SINE B2 3 187 -8 6 835 1196 98 52 0 chr4 32865959 32866133 -122763987 + B2_Mm1a SINE B2 3 185 -8 6 835 2961 102 65 82 chr4 32866206 32866732 -122763388 - MURVY-LTR LTR ERV1 0 519 3 6 835 473 313 15 8 chr4 32866932 32867064 -122763056 - MYSERV-int LTR ERVK -1460 5090 4958 6 835 486 213 102 45 chr4 32867223 32867400 -122762720 - RMER17C-int LTR ERVK -367 2871 2685 6 835 1795 108 7 9 chr4 32867468 32867742 -122762378 - RLTR10C LTR ERVK -3 433 84 6 835 396 0 0 0 chr4 32867742 32867786 -122762334 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 835 1658 158 57 68 chr4 32867786 32867877 -122762243 - RLTR10C LTR ERVK -282 83 1 6 835 4596 105 7 12 chr4 32867877 32868886 -122761234 - MMERVK10C-int LTR ERVK 0 7680 6651 6 835 11623 68 7 11 chr4 32868877 32870248 -122759872 - MMERVK10C-int LTR ERVK -1771 5810 4445 6 835 1190 76 111 0 chr4 32870248 32870419 -122759701 + B2_Mm1t SINE B2 4 193 0 6 835 11623 68 7 11 chr4 32870419 32870529 -122759591 - MMERVK10C-int LTR ERVK -3137 4444 4335 6 835 3751 57 0 21 chr4 32870526 32871010 -122759110 - MMERVK10C-int LTR ERVK -4595 2986 2513 6 835 458 48 0 0 chr4 32871007 32871070 -122759050 - MMERVK10C-int LTR ERVK -5634 1947 1885 6 835 396 173 123 0 chr4 32871061 32871142 -122758978 - MMERVK10C-int LTR ERVK -5109 1028 938 6 835 1433 203 123 14 chr4 32871129 32871594 -122758526 - MMERVK10C-int LTR ERVK -5449 688 192 6 835 5095 92 10 0 chr4 32871731 32872424 -122757696 - MMERVK10C-int LTR ERVK -6657 924 225 6 835 255 244 0 0 chr4 32872424 32872469 -122757651 - RLTR27 LTR ERVK -34 275 231 6 835 645 100 10 29 chr4 32872469 32872572 -122757548 - MMERVK10C-int LTR ERVK -7478 103 3 6 835 3200 113 0 0 chr4 32872572 32873007 -122757113 - RLTR10C LTR ERVK -1 435 1 6 835 1223 55 0 0 chr4 32873157 32873303 -122756817 + B1_Mus2 SINE Alu 2 147 0 6 835 206 0 0 65 chr4 32873304 32873335 -122756785 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 835 1229 48 7 0 chr4 32873729 32873876 -122756244 + B1_Mus1 SINE Alu 1 148 0 6 835 359 177 0 0 chr4 32874066 32874128 -122755992 - RLTR10C LTR ERVK 0 506 445 6 835 1291 231 63 102 chr4 32874140 32874583 -122755537 + RLTR23 LTR ERV1 5 430 0 6 835 1309 218 88 91 chr4 32874584 32874829 -122755291 - RLTR10C LTR ERVK -59 440 197 6 835 363 78 0 0 chr4 32874829 32874880 -122755240 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 835 1088 44 14 29 chr4 32874880 32875020 -122755100 - B1_Mus1 SINE Alu -9 139 2 6 835 1309 218 88 91 chr4 32875020 32875136 -122754984 - RLTR10C LTR ERVK -303 196 80 6 835 793 97 35 0 chr4 32875600 32875713 -122754407 + RMER16 LTR ERVK 417 533 0 6 835 732 151 32 0 chr4 32875713 32875839 -122754281 + RMER16-int LTR ERVK 1 130 -5276 6 835 322 261 191 0 chr4 32876019 32876134 -122753986 - MT2B LTR ERVL -167 366 230 6 835 286 255 82 41 chr4 32876161 32876318 -122753802 + ORR1D2 LTR MaLR 193 357 -62 6 835 210 71 0 0 chr4 32876323 32876351 -122753769 + (GAA)n Simple_repeat Simple_repeat 2 29 0 6 835 295 73 0 0 chr4 32876626 32876667 -122753453 - ORR1B1 LTR MaLR -353 41 1 6 835 1904 173 182 24 chr4 32876747 32877204 -122752916 + RLTR42-int LTR ERVK 2340 2868 -2654 6 835 6484 32 1 0 chr4 32877327 32878068 -122752052 - RLTR4_Mm LTR ERV1 0 742 1 6 835 1870 15 0 0 chr4 32878068 32878272 -122751848 - RLTR4_MM-int LTR ERV1 0 7601 7398 6 835 51724 16 2 0 chr4 32878253 32883948 -122746172 - RLTR4_MM-int LTR ERV1 -1899 5702 1 6 835 6484 32 1 0 chr4 32883948 32884689 -122745431 - RLTR4_Mm LTR ERV1 0 742 1 6 835 861 27 0 52 chr4 32885046 32885060 -122745060 - B1_Mm SINE Alu 0 147 138 6 835 207 0 0 0 chr4 32885060 32885083 -122745037 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 6 835 861 27 0 52 chr4 32885083 32885184 -122744936 - B1_Mm SINE Alu -10 137 38 6 835 359 216 26 113 chr4 32885109 32885194 -122744926 - MT2B LTR ERVL -337 264 189 6 835 1150 127 27 27 chr4 32885194 32885380 -122744740 - B2_Mm2 SINE B2 -9 186 1 6 835 359 216 26 113 chr4 32885380 32885409 -122744711 - MT2B LTR ERVL -413 188 160 6 835 1416 80 21 0 chr4 32885470 32885658 -122744462 + B2_Mm2 SINE B2 1 192 -3 6 835 1262 41 0 0 chr4 32886568 32886715 -122743405 + B1_Mus2 SINE Alu 1 147 0 6 835 316 280 53 11 chr4 32886772 32886866 -122743254 + RSINE1 SINE B4 3 100 -65 6 835 243 164 81 16 chr4 32888356 32888418 -122741702 + L1M3 LINE L1 5513 5578 -602 6 835 419 270 62 49 chr4 32888454 32888598 -122741522 + RSINE1 SINE B4 1 146 -19 6 835 927 154 170 0 chr4 32888681 32888869 -122741251 + URR1A DNA MER1_type 2 221 -5 6 835 1150 122 50 6 chr4 32889060 32889241 -122740879 + B2_Mm1t SINE B2 5 193 0 6 835 318 242 45 0 chr4 32889615 32889681 -122740439 - ID_B1 SINE B4 -78 146 78 6 835 425 154 165 0 chr4 32889876 32889967 -122740153 - B1F2 SINE Alu 0 149 44 7 835 1080 36 80 0 chr4 32890006 32890143 -122739977 - B1_Mus1 SINE Alu 0 148 1 7 835 2867 44 5 34 chr4 32890146 32890524 -122739596 - L1_Mus1 LINE L1 0 6567 6201 7 835 28 0 0 0 chr4 32890530 32890558 -122739562 + AT_rich Low_complexity Low_complexity 1 28 0 7 835 1265 54 0 0 chr4 32890558 32890706 -122739414 - B1_Mus1 SINE Alu 0 148 1 7 835 230 150 0 0 chr4 32891469 32891509 -122738611 - MurSatRep1 Unknown Unknown -1868 269 230 7 835 206 176 0 19 chr4 32893721 32893773 -122736347 + CT-rich Low_complexity Low_complexity 2 52 0 7 835 779 93 19 0 chr4 32894037 32894145 -122735975 - PB1D9 SINE Alu -9 111 2 7 835 395 231 133 9 chr4 32894170 32894275 -122735845 - PB1D9 SINE Alu -1 119 2 7 835 852 211 0 7 chr4 32894676 32894819 -122735301 - B1_Mur2 SINE Alu -7 142 1 7 835 1534 194 99 6 chr4 32895167 32895499 -122734621 + MTD LTR MaLR 24 386 -33 7 835 654 195 234 41 chr4 32895862 32896033 -122734087 + B3 SINE B2 2 205 -11 7 835 885 69 120 23 chr4 32896046 32896179 -122733941 - B1_Mus1 SINE Alu -1 147 2 7 835 742 214 43 0 chr4 32896223 32896363 -122733757 + RSINE1 SINE B4 3 148 -17 7 835 394 261 231 0 chr4 32896388 32896518 -122733602 - B3A SINE B2 -38 160 1 7 835 1199 71 41 6 chr4 32896525 32896696 -122733424 - B2_Mm2 SINE B2 -4 191 15 7 835 22 0 0 0 chr4 32897525 32897547 -122732573 + AT_rich Low_complexity Low_complexity 1 22 0 7 835 4567 53 12 36 chr4 32897891 32898493 -122731627 + LTRIS_Mus LTR ERV1 1 587 0 7 835 670 212 269 6 chr4 32898684 32898855 -122731265 + B3 SINE B2 1 216 0 7 835 339 192 64 79 chr4 32898858 32899061 -122731059 - RMER17A2 LTR ERVK -479 427 228 7 836 583 209 70 0 chr4 32899280 32899409 -122730711 + B1_Mur1 SINE Alu 5 142 -7 7 836 778 283 143 130 chr4 32899638 32900199 -122729921 + RLTR18 LTR ERVK 1 568 -48 7 836 304 91 0 0 chr4 32901118 32901162 -122728958 + ID_B1 SINE B4 176 219 -5 7 836 1417 65 16 21 chr4 32901169 32901357 -122728763 + B2_Mm2 SINE B2 2 188 -7 7 836 278 267 156 0 chr4 32901608 32901698 -122728422 + PB1D10 SINE Alu 1 104 -13 7 836 261 0 0 0 chr4 32901715 32901744 -122728376 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 836 1183 63 0 0 chr4 32901744 32901882 -122728238 - B1_Mus1 SINE Alu -4 144 7 7 836 792 0 0 0 chr4 32901903 32901991 -122728129 + (TTTTC)n Simple_repeat Simple_repeat 5 92 0 7 836 441 255 21 0 chr4 32901991 32902085 -122728035 - PB1D10 SINE Alu -12 105 10 7 836 425 274 49 31 chr4 32902001 32902163 -122727957 - ID_B1 SINE B4 -48 176 12 7 836 527 258 106 106 chr4 32902386 32902668 -122727452 + B4A SINE B4 1 282 -10 7 836 192 176 0 0 chr4 32902675 32902713 -122727407 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 836 2701 118 17 37 chr4 32902713 32903172 -122726948 + RLTR11B LTR ERVK 4 453 0 7 836 192 176 0 0 chr4 32903172 32903184 -122726936 + (CA)n Simple_repeat Simple_repeat 2 13 0 7 836 354 108 0 0 chr4 32903187 32903252 -122726868 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 7 836 718 149 0 0 chr4 32903270 32903377 -122726743 + B2_Mm1t SINE B2 2 108 -85 7 836 624 14 0 0 chr4 32903448 32903521 -122726599 + (GGAAA)n Simple_repeat Simple_repeat 2 74 0 7 836 203 279 12 25 chr4 32904356 32904437 -122725683 + CT-rich Low_complexity Low_complexity 5 84 0 7 836 659 163 114 0 chr4 32904829 32904952 -122725168 + B1_Mur1 SINE Alu 1 137 -12 7 836 348 297 59 8 chr4 32905180 32905299 -122724821 - MER5A DNA MER1_type -18 171 47 7 836 1951 128 74 0 chr4 32907039 32907336 -122722784 + ORR1A2 LTR MaLR 1 319 -8 7 836 399 171 0 0 chr4 32907456 32907532 -122722588 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 836 1133 53 0 0 chr4 32909587 32909719 -122720401 + B1_Mus2 SINE Alu 3 134 -13 7 836 231 36 0 0 chr4 32909719 32909747 -122720373 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 836 859 168 169 20 chr4 32910932 32911127 -122718993 - URR1B DNA MER1_type -1 224 1 7 836 240 111 0 0 chr4 32912454 32912499 -122717621 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 7 836 503 87 62 27 chr4 32912724 32912815 -122717305 + B1_Mus2 SINE Alu 2 147 0 7 836 639 39 0 0 chr4 32912818 32912896 -122717224 + (GA)n Simple_repeat Simple_repeat 2 79 0 7 836 585 42 0 0 chr4 32912896 32912967 -122717153 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 7 836 347 246 97 30 chr4 32913152 32913286 -122716834 - L1ME4a LINE L1 -17 6107 5965 7 836 297 295 0 0 chr4 32913553 32913631 -122716489 - ID4 SINE ID -1 82 5 7 836 323 367 51 0 chr4 32914243 32914401 -122715719 - MER105 DNA DNA -3 201 36 7 836 488 266 125 0 chr4 32914608 32914736 -122715384 - B1_Mur1 SINE Alu -1 148 5 7 836 270 0 0 0 chr4 32917072 32917102 -122713018 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 836 396 59 0 0 chr4 32917102 32917153 -122712967 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 836 464 287 0 0 chr4 32917203 32917304 -122712816 + PB1D10 SINE Alu 2 102 -15 7 836 1048 173 4 171 chr4 32917377 32917628 -122712492 + B3 SINE B2 1 209 -7 7 836 802 210 163 92 chr4 32917821 32917997 -122712123 + ORR1D1 LTR MaLR 7 182 -192 7 836 207 69 0 0 chr4 32917997 32918026 -122712094 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 836 802 220 156 90 chr4 32918026 32918194 -122711926 + ORR1D1 LTR MaLR 183 379 0 7 836 666 264 108 35 chr4 32918194 32918453 -122711667 + Lx8 LINE L1 6627 6904 -569 7 836 189 0 0 0 chr4 32918460 32918481 -122711639 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 7 836 796 179 7 7 chr4 32918481 32918622 -122711498 - B1_Mur3 SINE Alu 0 149 9 7 836 298 236 50 109 chr4 32918517 32918636 -122711484 - MT2B LTR ERVL -337 264 153 7 836 260 27 27 0 chr4 32919915 32919952 -122710168 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 7 836 189 0 0 0 chr4 32920094 32920115 -122710005 + (TTA)n Simple_repeat Simple_repeat 2 22 0 7 836 296 192 0 19 chr4 32922138 32922191 -122707929 - ID_B1 SINE B4 -13 211 160 7 836 745 220 95 95 chr4 32922346 32922557 -122707563 + B3 SINE B2 6 216 0 7 836 249 77 0 25 chr4 32923591 32923631 -122706489 + PB1D9 SINE Alu 80 118 -2 7 836 240 35 0 0 chr4 32923722 32923751 -122706369 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 836 950 98 126 0 chr4 32923751 32923894 -122706226 - B2_Mm2 SINE B2 -34 161 1 7 836 225 0 0 0 chr4 32925452 32925477 -122704643 + (A)n Simple_repeat Simple_repeat 1 25 0 7 836 371 302 19 0 chr4 32925681 32925787 -122704333 + MLT1A LTR MaLR 267 374 0 7 836 1576 154 201 10 chr4 32926560 32926868 -122703252 - ORR1B2 LTR MaLR 0 367 1 7 836 459 294 48 0 chr4 32927244 32927370 -122702750 - MIRb SINE MIR -40 228 97 7 836 417 39 0 0 chr4 32927438 32927489 -122702631 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 836 1189 198 251 12 chr4 32927510 32927837 -122702283 - MTD LTR MaLR -14 405 1 7 836 371 301 77 19 chr4 32928381 32928537 -122701583 - MER5A DNA MER1_type -23 166 2 7 836 1050 127 0 20 chr4 32928604 32928757 -122701363 - B1_Mur4 SINE Alu 0 150 1 7 836 642 239 141 5 chr4 32928781 32928966 -122701154 - B3 SINE B2 -6 210 1 7 836 779 92 217 0 chr4 32929001 32929121 -122700999 + B1_Mus1 SINE Alu 2 147 -1 7 836 218 154 39 0 chr4 32929123 32929175 -122700945 + A-rich Low_complexity Low_complexity 3 56 0 7 836 389 276 0 8 chr4 32930965 32931082 -122699038 - L1MB4 LINE L1 -2 6178 6063 7 836 304 357 126 22 chr4 32931093 32931371 -122698749 - L1MD LINE L1 -1962 4184 3878 7 836 212 143 0 23 chr4 32931408 32931451 -122698669 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 836 921 225 45 0 chr4 32931474 32931652 -122698468 - B3 SINE B2 -30 186 1 7 836 661 249 142 40 chr4 32931689 32931936 -122698184 - MER2 DNA MER2_type -1 344 73 7 836 755 234 0 0 chr4 32931954 32932095 -122698025 - B1_Mur1 SINE Alu -8 141 1 7 836 235 308 0 6 chr4 32932190 32932271 -122697849 - MER2 DNA MER2_type -266 79 2 7 836 712 313 83 13 chr4 32932284 32932585 -122697535 + MLT1A LTR MaLR 1 322 -52 7 836 196 20 36 89 chr4 32932945 32933001 -122697119 + (CCCA)n Simple_repeat Simple_repeat 3 55 0 7 836 360 305 63 105 chr4 32933246 32933337 -122696783 + RSINE1 SINE B4 8 102 -63 7 836 1519 52 16 0 chr4 32933337 32933529 -122696591 + B2_Mm2 SINE B2 1 195 0 7 836 360 305 63 105 chr4 32933529 32933580 -122696540 + RSINE1 SINE B4 103 144 -21 7 836 289 226 168 9 chr4 32934433 32934540 -122695580 + MER5B DNA MER1_type 55 178 0 7 836 1290 21 0 14 chr4 32934629 32934777 -122695343 - B1_Mm SINE Alu -1 146 1 7 836 464 260 45 40 chr4 32934984 32935160 -122694960 + L1MB3 LINE L1 5944 6120 -63 7 836 281 259 141 31 chr4 32935258 32935421 -122694699 + LTR37B LTR ERV1 245 425 -43 7 836 390 321 86 20 chr4 32936030 32936227 -122693893 + L1MC LINE L1 5522 5731 -2151 7 836 607 198 0 41 chr4 32936301 32936422 -122693698 + PB1D9 SINE Alu 3 118 -2 7 836 1673 42 0 0 chr4 32936422 32936614 -122693506 + B2_Mm1a SINE B2 2 193 0 7 836 945 156 197 16 chr4 32936658 32936841 -122693279 + B3 SINE B2 1 216 0 7 836 998 157 11 28 chr4 32937195 32937372 -122692748 - B2_Mm2 SINE B2 -19 176 3 7 836 446 321 22 7 chr4 32937388 32937526 -122692594 - B1F SINE Alu -9 140 1 8 836 274 368 86 17 chr4 32937541 32937657 -122692463 + RSINE1 SINE B4 29 152 -13 8 836 402 21 0 0 chr4 32937659 32937706 -122692414 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 836 346 277 190 36 chr4 32938668 32938863 -122691257 + MLT1C LTR MaLR 47 271 -196 8 836 1357 58 6 6 chr4 32938866 32939038 -122691082 + B2_Mm2 SINE B2 5 176 -19 8 836 407 106 15 0 chr4 32939038 32939104 -122691016 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 8 836 274 31 0 0 chr4 32939104 32939136 -122690984 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 836 2470 168 149 61 chr4 32940256 32941007 -122689113 - Lx7 LINE L1 -5 7691 6884 8 836 391 245 0 50 chr4 32941717 32941816 -122688304 + B1F1 SINE Alu 47 140 -9 8 836 264 282 128 15 chr4 32941852 32941985 -122688135 + L1MB4 LINE L1 6002 6149 -31 8 836 796 234 60 35 chr4 32942707 32942906 -122687214 + B3 SINE B2 5 208 -8 8 836 183 80 0 0 chr4 32942948 32942973 -122687147 + (C)n Simple_repeat Simple_repeat 1 25 0 8 836 562 158 219 0 chr4 32942983 32943097 -122687023 - B1_Mus1 SINE Alu 0 148 10 8 836 285 248 250 83 chr4 32942985 32943117 -122687003 - B4 SINE B4 -69 223 70 8 836 710 294 188 20 chr4 32943136 32943493 -122686627 + MER47B DNA MER2_type 2 418 0 8 836 415 241 0 41 chr4 32943515 32943636 -122686484 + PB1D7 SINE Alu 3 118 -2 8 836 557 238 60 68 chr4 32943662 32943790 -122686330 + L1M5 LINE L1 5514 5649 -530 8 836 3799 52 30 0 chr4 32943790 32944251 -122685869 + MT2C_Mm LTR ERVL 1 475 0 8 836 557 238 60 68 chr4 32944251 32944374 -122685746 + L1M5 LINE L1 5650 5763 -416 8 836 589 327 85 5 chr4 32944381 32944593 -122685527 + Tigger7 DNA MER2_type 2 230 -2261 8 836 347 309 24 8 chr4 32944618 32944745 -122685375 + L1MB5 LINE L1 5782 5910 -264 8 836 1325 174 25 13 chr4 32944746 32944984 -122685136 - MTC LTR MaLR 0 421 181 8 836 982 92 42 7 chr4 32944984 32945127 -122684993 + B1_Mus1 SINE Alu 1 148 0 8 836 208 162 27 0 chr4 32945127 32945164 -122684956 + GA-rich Low_complexity Low_complexity 2 39 0 8 836 207 0 0 0 chr4 32945206 32945229 -122684891 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 836 1320 62 0 0 chr4 32945229 32945389 -122684731 - B2_Mm1a SINE B2 -33 160 1 8 836 592 121 33 0 chr4 32945389 32945479 -122684641 - MTC LTR MaLR -324 97 5 8 836 248 313 25 0 chr4 32945482 32945585 -122684535 + L1MB5 LINE L1 5906 6011 -280 8 836 315 266 214 16 chr4 32945628 32945754 -122684366 - MLT1A LTR MaLR -54 320 170 8 836 1225 61 0 0 chr4 32945918 32946065 -122684055 + B1_Mus2 SINE Alu 1 147 0 8 836 402 271 119 25 chr4 32946151 32946296 -122683824 - MIRb SINE MIR -66 196 46 8 836 26 0 0 0 chr4 32947864 32947890 -122682230 + AT_rich Low_complexity Low_complexity 1 26 0 8 836 345 247 47 0 chr4 32948441 32948526 -122681594 + RSINE1 SINE B4 4 92 -73 8 836 252 0 0 0 chr4 32948540 32948568 -122681552 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 836 225 0 0 0 chr4 32948571 32948596 -122681524 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 836 318 265 29 0 chr4 32948968 32949036 -122681084 - ID4 SINE ID -12 71 2 8 836 423 0 0 0 chr4 32949178 32949225 -122680895 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 836 185 83 0 27 chr4 32949815 32949852 -122680268 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 8 836 1260 35 0 0 chr4 32952273 32952418 -122677702 - B1_Mus2 SINE Alu -2 145 1 8 836 1639 120 33 8 chr4 32952418 32952661 -122677459 - RMER19B LTR ERVK -16 886 638 8 836 1359 176 15 125 chr4 32952645 32952876 -122677244 - RMER19B LTR ERVK -602 300 74 8 836 1285 34 0 0 chr4 32952876 32953023 -122677097 + B1_Mus2 SINE Alu 1 147 0 8 836 1359 176 15 125 chr4 32953023 32953128 -122676992 - RMER19B LTR ERVK -829 73 1 8 836 399 310 99 48 chr4 32953416 32953749 -122676371 + MLT1B LTR MaLR 46 402 -6 8 836 204 254 104 0 chr4 32953826 32953893 -122676227 + MIRm SINE MIR 203 276 0 8 836 253 154 211 0 chr4 32954763 32954815 -122675305 + PB1D9 SINE Alu 20 82 -38 8 836 682 259 48 24 chr4 32954937 32955230 -122674890 - L1MC2 LINE L1 -361 5983 5684 8 836 459 0 0 0 chr4 32956705 32956756 -122673364 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 836 306 0 0 0 chr4 32956758 32956792 -122673328 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 836 641 258 75 45 chr4 32956792 32956991 -122673129 - B4A SINE B4 -87 205 1 8 836 549 0 0 0 chr4 32957577 32957638 -122672482 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 836 485 306 7 7 chr4 32957641 32957779 -122672341 - ID_B1 SINE B4 -5 219 82 8 836 697 201 96 8 chr4 32957931 32958096 -122672024 + B3 SINE B2 20 206 -10 8 836 214 202 19 66 chr4 32958221 32958327 -122671793 + (TTATA)n Simple_repeat Simple_repeat 2 102 0 8 836 530 244 89 0 chr4 32958658 32958793 -122671327 - Lx7 LINE L1 -1954 5742 5596 8 836 318 67 0 0 chr4 32958911 32958956 -122671164 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 836 874 152 15 123 chr4 32960314 32960517 -122669603 + B2_Mm2 SINE B2 6 186 -9 8 836 1216 94 71 6 chr4 32960936 32961118 -122669002 + B2_Mm2 SINE B2 2 195 0 8 836 181 189 73 98 chr4 32961118 32961200 -122668920 - L3 LINE CR1 -4404 85 6 8 836 21 0 0 0 chr4 32961752 32961773 -122668347 + AT_rich Low_complexity Low_complexity 1 21 0 8 836 269 278 13 53 chr4 32961773 32961849 -122668271 - B3A SINE B2 -62 136 64 8 836 265 234 12 0 chr4 32961884 32961950 -122668170 - B3 SINE B2 -121 72 4 8 836 311 284 78 33 chr4 32962005 32962158 -122667962 + L1MB7 LINE L1 5597 5756 -428 8 836 438 300 86 36 chr4 32962237 32962517 -122667603 + L1MB7 LINE L1 5872 6165 -19 8 836 632 135 0 28 chr4 32963275 32963374 -122666746 + B2_Mm2 SINE B2 2 97 -98 8 836 3131 45 2 25 chr4 32963374 32963492 -122666628 + MTA_Mm LTR MaLR 1 117 -279 8 836 3572 18 2 0 chr4 32963492 32963887 -122666233 - MTA_Mm LTR MaLR 0 396 1 8 836 9066 41 6 1 chr4 32963887 32964980 -122665140 - MTA_Mm-int LTR MaLR 0 1098 1 8 836 3572 18 2 0 chr4 32964980 32965375 -122664745 - MTA_Mm LTR MaLR 0 396 1 8 836 3131 45 2 25 chr4 32965375 32965659 -122664461 + MTA_Mm LTR MaLR 118 394 -2 8 836 394 215 53 100 chr4 32965659 32965766 -122664354 + B2_Mm2 SINE B2 94 193 -2 8 836 648 170 35 2 chr4 32965790 32965917 -122664203 + B1_Mur3 SINE Alu 1 129 -21 8 836 260 360 48 13 chr4 32966202 32966430 -122663690 + MERVL_2A-int LTR ERVL 2031 2266 -3495 8 836 756 179 7 85 chr4 32966945 32967098 -122663022 + B1_Mur4 SINE Alu 1 141 -9 8 836 582 231 0 0 chr4 32967578 32967721 -122662399 + GA-rich Low_complexity Low_complexity 3 145 0 8 836 239 298 187 22 chr4 32968209 32968391 -122661729 - MIRb SINE MIR -8 260 49 8 836 323 301 95 89 chr4 32968746 32969147 -122660973 - RMER13A LTR ERVK -207 435 1 8 836 321 26 0 0 chr4 32969211 32969249 -122660871 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 836 816 229 19 13 chr4 32969251 32969410 -122660710 - B3A SINE B2 -38 160 1 8 836 2447 56 50 0 chr4 32970203 32970525 -122659595 - ORR1A1 LTR MaLR -8 338 1 8 836 1246 100 44 0 chr4 32970545 32970725 -122659395 - B2_Mm2 SINE B2 -7 188 1 8 836 279 199 47 21 chr4 32970800 32970871 -122659249 - MTD LTR MaLR 0 370 292 8 836 352 253 0 12 chr4 32970892 32970972 -122659148 - MTD LTR MaLR -145 274 196 8 836 928 269 5 37 chr4 32970970 32971186 -122658934 - B3 SINE B2 -6 210 2 8 836 576 204 0 18 chr4 32971190 32971300 -122658820 - B1_Mur1 SINE Alu 0 149 42 8 836 292 271 117 36 chr4 32971217 32971328 -122658792 - MT2B LTR ERVL -323 278 159 8 836 583 215 212 11 chr4 32971318 32971497 -122658623 - MTD LTR MaLR -204 215 1 8 836 234 162 40 0 chr4 32971591 32971665 -122658455 + T-rich Low_complexity Low_complexity 4 80 0 8 836 255 225 169 0 chr4 32972043 32972114 -122658006 + ID2 SINE ID 1 83 0 8 836 1678 26 5 0 chr4 32972347 32972539 -122657581 - B2_Mm1t SINE B2 0 193 1 8 836 966 286 70 7 chr4 32972676 32972947 -122657173 - B4 SINE B4 -3 289 2 8 836 2459 195 70 4 chr4 32973029 32973387 -122656733 + RMER5 LTR ERV1 2 369 -165 8 836 992 107 7 35 chr4 32973387 32973532 -122656588 - B1_Mur4 SINE Alu -9 141 1 8 836 2459 195 70 4 chr4 32973532 32973673 -122656447 + RMER5 LTR ERV1 370 533 -1 8 836 513 0 0 0 chr4 32973790 32973847 -122656273 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 836 418 277 11 10 chr4 32974075 32974192 -122655928 - MTE2b LTR MaLR 0 379 267 8 836 542 316 60 80 chr4 32974189 32974488 -122655632 - MTE2b LTR MaLR -75 304 12 8 836 1667 16 0 21 chr4 32974598 32974791 -122655329 + B2_Mm1a SINE B2 2 190 -3 8 836 1187 22 0 41 chr4 32974983 32975128 -122654992 - B1_Mm SINE Alu -8 139 1 8 836 186 326 116 17 chr4 32975315 32975496 -122654624 - L2c LINE L2 -157 3230 3032 8 836 771 259 15 35 chr4 32975941 32976141 -122653979 - B3A SINE B2 0 198 3 8 836 299 152 256 81 chr4 32976589 32976675 -122653445 + B2_Mm2 SINE B2 1 101 -94 8 836 347 297 149 19 chr4 32976772 32976933 -122653187 + MLT2B2 LTR ERVL 376 557 -5 8 836 237 213 38 51 chr4 32977255 32977334 -122652786 - Tigger9a DNA Tigger -74 658 581 8 836 287 197 61 0 chr4 32977784 32977850 -122652270 - Lx8 LINE L1 -563 6910 6841 8 836 906 248 112 36 chr4 32978073 32978458 -122651662 - RMER10A LTR ERVL -9 433 20 8 836 885 240 188 39 chr4 32978743 32979073 -122651047 + MTE2b LTR MaLR 1 379 0 8 836 292 295 31 21 chr4 32980634 32980731 -122649389 + MIR SINE MIR 30 127 -81 8 836 569 202 30 0 chr4 32980806 32980905 -122649215 - ID_B1 SINE B4 -42 182 81 8 836 311 284 10 31 chr4 32981182 32981278 -122648842 + B4 SINE B4 2 95 -197 8 836 428 254 69 38 chr4 32981278 32981409 -122648711 + RSINE1 SINE B4 3 137 -28 8 836 1635 164 48 10 chr4 32981420 32981708 -122648412 + ORR1C2 LTR MaLR 5 303 -81 8 836 1020 106 5 0 chr4 32981708 32981863 -122648257 + B2_Mm2 SINE B2 2 162 -31 8 836 634 289 37 37 chr4 32981887 32982074 -122648046 + B4A SINE B4 71 257 -35 8 836 1307 59 59 0 chr4 32982393 32982563 -122647557 + B2_Mm2 SINE B2 2 181 -14 8 836 235 250 77 15 chr4 32982966 32983031 -122647089 + ID4_ SINE ID 12 80 -3 9 836 230 337 316 15 chr4 32983231 32983427 -122646693 + L2b LINE L2 3113 3367 -8 9 836 304 222 125 0 chr4 32983454 32983526 -122646594 + ID4_ SINE ID 1 81 -2 9 836 353 217 0 0 chr4 32984068 32984128 -122645992 - tRNA-Ala-GCY_ tRNA tRNA -4 71 12 9 836 213 258 0 29 chr4 32985198 32985266 -122644854 + A-rich Low_complexity Low_complexity 2 67 0 9 836 396 55 0 0 chr4 32985847 32985902 -122644218 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 836 307 230 14 0 chr4 32987633 32987707 -122642413 + L1M2 LINE L1 2958 3032 -3111 9 836 574 247 113 27 chr4 32987718 32987868 -122642252 + RSINE1 SINE B4 3 165 0 9 836 1628 27 0 5 chr4 32987885 32988071 -122642049 - B2_Mm1a SINE B2 -7 186 2 9 836 1461 85 0 5 chr4 32988097 32988286 -122641834 + B2_Mm2 SINE B2 2 189 -6 9 836 458 233 57 50 chr4 32988307 32988447 -122641673 + B2_Mm2 SINE B2 36 176 -19 9 836 314 189 133 47 chr4 32988454 32988604 -122641516 + L1M2 LINE L1 3040 3202 -2941 9 836 1251 48 0 0 chr4 32988708 32988854 -122641266 + B1_Mus2 SINE Alu 2 147 0 9 836 189 196 0 0 chr4 32988854 32988900 -122641220 + A-rich Low_complexity Low_complexity 1 46 0 9 836 302 260 260 0 chr4 32988925 32989079 -122641041 + L1M2 LINE L1 3441 3634 -2509 9 836 748 269 55 0 chr4 32989390 32989591 -122640529 + ID_B1 SINE B4 1 212 -12 9 836 1413 89 0 20 chr4 32989626 32989821 -122640299 + B2_Mm2 SINE B2 1 191 -4 9 836 1224 68 0 0 chr4 32989967 32990113 -122640007 + B1_Mus2 SINE Alu 1 146 -1 9 836 318 316 139 43 chr4 32990124 32990405 -122639715 + L1M5 LINE L1 5423 5730 -510 9 836 874 233 62 0 chr4 32991167 32991360 -122638760 - B3 SINE B2 -10 206 2 9 836 183 224 170 88 chr4 32992407 32992554 -122637566 - MIRb SINE MIR -109 159 1 9 836 555 252 0 9 chr4 32993372 32993488 -122636632 + B1_Mus1 SINE Alu 14 128 -20 9 836 285 302 73 73 chr4 32993373 32993523 -122636597 + B4 SINE B4 97 246 -46 9 836 358 250 144 8 chr4 32993784 32993909 -122636211 - MLT1I LTR MaLR -134 277 136 9 836 321 26 0 0 chr4 32994584 32994622 -122635498 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 836 252 0 0 0 chr4 32994622 32994649 -122635471 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 836 245 255 0 0 chr4 32995403 32995454 -122634666 + MLT1F2 LTR MaLR 428 478 -82 9 836 630 223 9 0 chr4 32995566 32995678 -122634442 + B1_Mur1 SINE Alu 21 133 -16 9 836 324 0 0 0 chr4 32996688 32996724 -122633396 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 836 648 274 106 50 chr4 32996788 32997230 -122632890 - L1MA9 LINE L1 -80 6232 5766 9 836 741 129 0 25 chr4 32997504 32997623 -122632497 - B3 SINE B2 -100 116 1 9 836 1168 191 0 40 chr4 32997664 32997888 -122632232 + B3 SINE B2 2 216 0 9 836 240 35 0 0 chr4 32997906 32997935 -122632185 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 836 651 198 119 22 chr4 32998107 32998241 -122631879 - B1_Mur1 SINE Alu 0 149 3 9 836 1565 52 16 0 chr4 32998325 32998516 -122631604 - B2_Mm2 SINE B2 0 195 2 9 836 214 200 0 48 chr4 32998666 32998708 -122631412 + B1F2 SINE Alu 11 50 -99 9 836 1558 199 60 22 chr4 32999682 33000000 -122630120 + ORR1D1 LTR MaLR 1 330 -44 9 836 235 147 0 0 chr4 33000771 33000805 -122629315 + MTC LTR MaLR 82 115 -244 1 836 1401 183 134 6 chr4 33000842 33001155 -122628965 - ORR1B2 LTR MaLR 0 367 15 2 836 665 159 30 53 chr4 33001210 33001343 -122628777 - ORR1D2 LTR MaLR -1 369 240 3 836 200 200 25 0 chr4 33001965 33002005 -122628115 + GA-rich Low_complexity Low_complexity 2 42 0 4 836 594 256 47 0 chr4 33002239 33002368 -122627752 + B3 SINE B2 77 211 -5 5 836 457 49 0 16 chr4 33002533 33002595 -122627525 + B2_Mm2 SINE B2 115 175 -20 6 836 696 201 11 89 chr4 33003183 33003374 -122626746 + MTC LTR MaLR 238 413 -8 1 836 5284 140 107 54 chr4 33003377 33004465 -122625655 + MTC-int LTR MaLR 2 1146 -112 1 836 444 283 50 66 chr4 33004669 33005061 -122625059 - MLT1C LTR MaLR 0 467 20 7 836 252 296 125 58 chr4 33005168 33005376 -122624744 + L2b LINE L2 3149 3370 -5 8 836 242 342 80 18 chr4 33005999 33006112 -122624008 + Charlie9 DNA MER1_type 8 127 -2630 9 836 279 267 54 22 chr4 33006128 33006220 -122623900 + Charlie9 DNA MER1_type 2663 2757 0 9 836 1188 82 0 0 chr4 33006268 33006415 -122623705 + B1_Mus2 SINE Alu 1 147 0 1 836 227 93 0 23 chr4 33006639 33006683 -122623437 + (GTTTG)n Simple_repeat Simple_repeat 5 47 0 1 836 722 167 34 55 chr4 33007078 33007224 -122622896 + B1_Mur2 SINE Alu 1 143 -6 1 836 321 118 0 0 chr4 33007224 33007275 -122622845 + (GGGAGA)n Simple_repeat Simple_repeat 3 53 0 1 836 396 71 0 0 chr4 33007275 33007331 -122622789 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 1 836 222 290 175 35 chr4 33007666 33007683 -122622437 - MIR SINE MIR -46 216 200 1 836 369 0 0 0 chr4 33007683 33007724 -122622396 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 836 222 294 172 39 chr4 33007724 33007886 -122622234 - MIR SINE MIR -65 203 22 1 836 439 217 85 0 chr4 33008742 33008848 -122621272 - PB1D10 SINE Alu 0 117 3 1 836 232 329 13 0 chr4 33008881 33008960 -122621160 + ID4 SINE ID 1 80 -3 1 836 21 0 0 0 chr4 33008960 33008981 -122621139 + AT_rich Low_complexity Low_complexity 1 21 0 1 836 622 303 102 8 chr4 33009211 33009422 -122620698 + B4A SINE B4 2 227 -65 2 836 799 248 49 5 chr4 33009422 33009625 -122620495 + B3 SINE B2 4 215 -1 2 836 622 303 102 8 chr4 33009625 33009659 -122620461 + B4A SINE B4 228 269 -23 2 836 411 269 13 4 chr4 33009925 33010040 -122620080 + PB1D10 SINE Alu 1 115 -34 2 836 211 306 96 7 chr4 33010040 33010059 -122620061 + B4A SINE B4 86 231 -61 2 836 1165 144 30 15 chr4 33011256 33011373 -122618747 + RLTR24 LTR ERV1 329 451 -78 2 836 1114 38 45 0 chr4 33011373 33011506 -122618614 + B1_Mus2 SINE Alu 1 139 -8 2 836 207 0 0 0 chr4 33011506 33011529 -122618591 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 836 1165 144 30 15 chr4 33011529 33011608 -122618512 + RLTR24 LTR ERV1 452 528 -1 2 836 867 152 14 20 chr4 33012107 33012255 -122617865 - B1_Mur2 SINE Alu -2 147 1 2 836 1204 61 0 0 chr4 33012642 33012789 -122617331 - B1_Mus2 SINE Alu 0 147 1 2 836 988 105 123 0 chr4 33012789 33012950 -122617170 - B2_Mm2 SINE B2 -12 183 2 2 836 234 259 0 49 chr4 33013127 33013188 -122616932 + L1Md_Gf LINE L1 451 508 -6014 3 836 285 268 125 66 chr4 33013227 33013363 -122616757 + MT2B2 LTR ERVL 97 240 -344 3 836 934 118 0 0 chr4 33013284 33013419 -122616701 + B1_Mur4 SINE Alu 8 142 -8 3 836 291 114 0 0 chr4 33013458 33013502 -122616618 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 3 836 711 214 24 68 chr4 33013518 33013724 -122616396 + B3A SINE B2 2 198 0 3 836 230 73 24 0 chr4 33013801 33013842 -122616278 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 3 836 1105 97 0 0 chr4 33013963 33014107 -122616013 + B1_Mus2 SINE Alu 1 144 -3 3 836 198 0 0 0 chr4 33014107 33014129 -122615991 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 836 893 87 0 23 chr4 33014471 33014601 -122615519 + B2_Mm2 SINE B2 51 177 -18 3 836 255 203 33 17 chr4 33014622 33014682 -122615438 + 4.5SRNA scRNA scRNA 26 86 -8 3 836 798 73 0 0 chr4 33014631 33014740 -122615380 + B1_Mus1 SINE Alu 40 148 0 4 836 269 322 41 50 chr4 33014853 33014961 -122615159 + PB1D7 SINE Alu 1 108 -12 4 836 1167 88 0 0 chr4 33014961 33015108 -122615012 + B1_Mus2 SINE Alu 1 147 0 4 836 269 322 41 50 chr4 33015108 33015120 -122615000 + PB1D7 SINE Alu 109 120 0 4 836 555 172 141 0 chr4 33015140 33015268 -122614852 + MTD LTR MaLR 260 405 -14 4 836 880 180 47 23 chr4 33015284 33015455 -122614665 + B3A SINE B2 2 176 -22 4 836 429 340 50 19 chr4 33015488 33015647 -122614473 + Tigger7 DNA MER2_type 131 294 -2197 4 836 21 0 0 0 chr4 33016117 33016138 -122613982 + AT_rich Low_complexity Low_complexity 1 21 0 4 836 475 285 7 89 chr4 33016375 33016510 -122613610 + ID_B1 SINE B4 92 215 -9 4 836 464 337 72 69 chr4 33016520 33016711 -122613409 + B4 SINE B4 1 204 -88 4 836 450 0 0 0 chr4 33016711 33016761 -122613359 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 836 464 337 72 69 chr4 33016761 33016812 -122613308 + B4 SINE B4 205 253 -39 4 836 2280 177 110 48 chr4 33016812 33017359 -122612761 + RLTR31A_Mm LTR ERVK 1 581 -3 5 836 464 337 72 69 chr4 33017359 33017405 -122612715 + B4 SINE B4 254 290 -2 4 836 1209 68 0 0 chr4 33017470 33017617 -122612503 + B1_Mm SINE Alu 1 147 0 5 836 352 150 125 0 chr4 33017892 33017972 -122612148 + B1_Mus1 SINE Alu 35 124 -24 5 836 375 192 0 0 chr4 33017988 33018066 -122612054 + GA-rich Low_complexity Low_complexity 4 81 0 5 836 691 219 46 134 chr4 33018206 33018422 -122611698 - MTD LTR MaLR 0 419 223 5 836 261 0 0 0 chr4 33018510 33018539 -122611581 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 836 847 201 94 0 chr4 33018567 33018726 -122611394 + B3 SINE B2 5 178 -38 5 836 706 245 57 29 chr4 33018773 33018983 -122611137 + B3 SINE B2 1 216 0 5 836 1766 189 117 8 chr4 33019054 33019423 -122610697 + MTD LTR MaLR 1 409 -10 5 836 1260 27 7 0 chr4 33019910 33020056 -122610064 + B1_Mus2 SINE Alu 1 147 0 5 836 1477 230 72 16 chr4 33020357 33020786 -122609334 + Lx8 LINE L1 6327 6779 -694 6 836 416 267 109 7 chr4 33020809 33020956 -122609164 + Lx8 LINE L1 6843 7004 -469 6 836 226 254 79 0 chr4 33020956 33021019 -122609101 + ID4 SINE ID 3 70 -13 6 836 423 0 0 0 chr4 33021110 33021157 -122608963 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 6 836 1261 89 0 0 chr4 33021267 33021436 -122608684 - B2_Mm2 SINE B2 -26 169 1 6 836 236 71 48 0 chr4 33021477 33021519 -122608601 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 6 836 1282 27 0 0 chr4 33021519 33021666 -122608454 - B1_Mus2 SINE Alu 0 147 1 6 836 1272 34 0 0 chr4 33022134 33022281 -122607839 + B1_Mus2 SINE Alu 1 147 0 6 836 203 61 30 0 chr4 33022282 33022315 -122607805 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 6 836 368 326 61 0 chr4 33022427 33022559 -122607561 + B1F2 SINE Alu 1 140 -9 6 836 629 192 39 31 chr4 33022625 33022754 -122607366 - B1_Mur2 SINE Alu 0 149 20 6 836 1180 68 0 0 chr4 33022762 33022908 -122607212 + B1_Mus2 SINE Alu 2 147 0 7 836 676 187 40 73 chr4 33022929 33023079 -122607041 + B1_Mus2 SINE Alu 2 146 -1 7 836 290 147 15 0 chr4 33023107 33023175 -122606945 + GA-rich Low_complexity Low_complexity 2 70 0 7 836 767 178 191 48 chr4 33023216 33023405 -122606715 - B3 SINE B2 0 216 1 7 836 251 296 28 0 chr4 33024381 33024452 -122605668 + ID4_ SINE ID 1 73 -10 7 836 440 72 14 0 chr4 33024475 33024544 -122605576 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 836 308 287 24 73 chr4 33024706 33024830 -122605290 + L1M5 LINE L1 5577 5694 -430 7 836 722 138 138 0 chr4 33024863 33024993 -122605127 + B1_Mus1 SINE Alu 1 148 0 7 836 1351 77 11 21 chr4 33025173 33025359 -122604761 - B2_Mm2 SINE B2 -6 189 6 7 836 206 237 68 0 chr4 33025506 33025565 -122604555 + GA-rich Low_complexity Low_complexity 2 64 0 7 836 562 208 172 41 chr4 33025589 33025810 -122604310 + MLT1B LTR MaLR 18 267 -123 8 836 970 93 22 0 chr4 33025824 33025963 -122604157 - B2_Mm2 SINE B2 -53 142 1 8 836 185 154 0 25 chr4 33026018 33026058 -122604062 + GA-rich Low_complexity Low_complexity 5 43 0 8 836 212 167 21 0 chr4 33026086 33026134 -122603986 + GA-rich Low_complexity Low_complexity 2 50 0 8 836 764 286 148 18 chr4 33026134 33026472 -122603648 + Tigger6b DNA MER2_type 1093 1474 -123 8 836 354 45 0 0 chr4 33027009 33027053 -122603067 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 8 836 1237 107 27 0 chr4 33027539 33027726 -122602394 - B2_Mm1t SINE B2 0 193 2 8 836 1352 80 17 0 chr4 33027745 33027920 -122602200 - B2_Mm2 SINE B2 -17 178 1 8 836 916 228 190 97 chr4 33028784 33028954 -122601166 - MTC LTR MaLR -8 413 197 8 836 1786 5 0 0 chr4 33028954 33029146 -122600974 - B2_Mm1a SINE B2 -1 192 1 8 836 916 228 190 97 chr4 33029146 33029296 -122600824 - MTC LTR MaLR -225 196 63 8 836 1014 135 5 77 chr4 33029331 33029539 -122600581 + B2_Mm2 SINE B2 2 194 -1 8 836 489 231 32 64 chr4 33029539 33029689 -122600431 + ID_B1 SINE B4 71 216 -8 9 836 919 99 0 41 chr4 33029552 33029699 -122600421 + B1_Mus1 SINE Alu 8 148 0 9 836 212 298 91 55 chr4 33029813 33029923 -122600197 - PB1D7 SINE Alu -6 114 1 9 837 348 24 0 0 chr4 33030264 33030305 -122599815 + (TAA)n Simple_repeat Simple_repeat 2 42 0 9 837 1417 74 21 0 chr4 33030340 33030529 -122599591 - B2_Mm1a SINE B2 0 193 1 9 837 810 38 0 45 chr4 33030538 33030649 -122599471 - B1_Mus2 SINE Alu 0 147 42 9 837 289 168 69 59 chr4 33030592 33030693 -122599427 - RLTR25B LTR ERVK -530 498 397 9 837 384 103 0 33 chr4 33030689 33030749 -122599371 - PB1D9 SINE Alu -61 59 2 9 837 230 282 70 12 chr4 33030913 33030999 -122599121 + MER34A1 LTR ERV1 89 179 -408 9 837 237 254 14 40 chr4 33031070 33031144 -122598976 + MER34A1 LTR ERV1 295 366 -221 9 837 440 242 92 43 chr4 33031170 33031204 -122598916 + ID_B1 SINE B4 53 224 0 9 837 635 192 46 0 chr4 33031204 33031334 -122598786 + B1_Mur4 SINE Alu 15 150 0 1 837 23 0 0 0 chr4 33031587 33031610 -122598510 + AT_rich Low_complexity Low_complexity 1 23 0 1 837 288 0 0 0 chr4 33032190 33032222 -122597898 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 837 235 157 176 54 chr4 33032302 33032376 -122597744 - PB1D10 SINE Alu 0 117 35 1 837 297 75 0 0 chr4 33032813 33032853 -122597267 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1 837 630 161 0 0 chr4 33032852 33032964 -122597156 + G-rich Low_complexity Low_complexity 2 113 0 1 837 1147 36 0 41 chr4 33033113 33033137 -122596983 + B1_Mm SINE Alu 2 22 -125 1 837 387 0 0 0 chr4 33033137 33033180 -122596940 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 837 1147 36 0 41 chr4 33033180 33033300 -122596820 + B1_Mm SINE Alu 23 140 -7 1 837 195 69 0 0 chr4 33033300 33033329 -122596791 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 837 243 79 0 0 chr4 33033505 33033543 -122596577 + (CCA)n Simple_repeat Simple_repeat 2 39 0 1 837 1459 63 11 0 chr4 33033817 33034007 -122596113 + B2_Mm1t SINE B2 2 193 0 1 837 1188 68 0 0 chr4 33034008 33034154 -122595966 + B1_Mus2 SINE Alu 2 147 0 1 837 271 270 11 33 chr4 33034234 33034326 -122595794 - L1MB3 LINE L1 -188 5995 5906 1 837 522 117 138 0 chr4 33034497 33034591 -122595529 + B1_Mur3 SINE Alu 24 130 -19 1 837 255 272 86 11 chr4 33034815 33034908 -122595212 + PB1D7 SINE Alu 20 119 -1 1 837 295 205 325 6 chr4 33034915 33035023 -122595097 + B3 SINE B2 5 161 -55 1 837 396 0 0 0 chr4 33035023 33035067 -122595053 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 837 295 205 325 6 chr4 33035067 33035115 -122595005 + B3 SINE B2 162 210 -6 1 837 39 38 0 0 chr4 33035115 33035168 -122594952 + AT_rich Low_complexity Low_complexity 1 53 0 1 837 228 172 200 15 chr4 33035367 33035432 -122594688 + PB1D9 SINE Alu 44 120 0 1 837 526 184 36 27 chr4 33036210 33036322 -122593798 - PB1D10 SINE Alu -3 114 2 1 837 750 198 8 65 chr4 33036323 33036520 -122593600 - B3 SINE B2 -9 186 1 1 837 301 231 124 65 chr4 33036707 33036860 -122593260 - RSINE1 SINE B4 0 165 4 1 837 21 0 0 0 chr4 33037830 33037851 -122592269 + GC_rich Low_complexity Low_complexity 1 21 0 1 837 283 279 0 14 chr4 33038583 33038652 -122591468 + B4A SINE B4 15 82 -210 1 837 234 265 0 0 chr4 33038678 33038727 -122591393 + (CATG)n Simple_repeat Simple_repeat 4 52 0 1 837 276 149 0 0 chr4 33038742 33038789 -122591331 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 837 188 111 0 27 chr4 33039114 33039151 -122590969 + (CCA)n Simple_repeat Simple_repeat 2 37 0 1 837 206 93 22 65 chr4 33039645 33039691 -122590429 + A-rich Low_complexity Low_complexity 2 45 0 1 837 1365 170 114 108 chr4 33039986 33040050 -122590070 - ORR1D1 LTR MaLR -3 371 308 1 837 1377 88 0 44 chr4 33040050 33040253 -122589867 + B2_Mm2 SINE B2 2 195 0 1 837 1365 170 114 108 chr4 33040253 33040557 -122589563 - ORR1D1 LTR MaLR -67 307 2 1 837 795 199 105 43 chr4 33040896 33041106 -122589014 - ID_B1 SINE B4 0 224 2 1 837 327 49 0 0 chr4 33041164 33041205 -122588915 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 837 1156 147 25 10 chr4 33041205 33041404 -122588716 - RMER17C LTR ERVK 0 410 209 1 837 1491 186 60 92 chr4 33041526 33041894 -122588226 + ORR1B1 LTR MaLR 39 394 0 1 837 249 93 70 0 chr4 33042092 33042135 -122587985 - MTD LTR MaLR 0 419 374 1 837 1042 162 90 10 chr4 33042135 33042335 -122587785 + B3 SINE B2 1 216 0 1 837 22 0 0 0 chr4 33042345 33042367 -122587753 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 1387 77 6 6 chr4 33042388 33042571 -122587549 + B2_Mm1t SINE B2 1 183 -10 1 837 450 274 91 26 chr4 33042574 33042806 -122587314 - L1MD2 LINE L1 -442 5917 5671 1 837 610 286 82 148 chr4 33042848 33043160 -122586960 + RLTR18 LTR ERVK 1 307 -309 1 837 2656 69 0 9 chr4 33043160 33043509 -122586611 - L1_Mus1 LINE L1 0 6567 6222 1 837 610 282 70 149 chr4 33043509 33043773 -122586347 + RLTR18 LTR ERVK 308 537 -79 1 837 431 301 27 40 chr4 33043857 33044006 -122586114 - RSINE1 SINE B4 -15 150 4 1 837 1116 128 102 10 chr4 33044022 33044219 -122585901 - Lx4A LINE L1 -1 7057 6843 1 837 1332 122 5 5 chr4 33044229 33044427 -122585693 + Lx4B LINE L1 6641 6838 -220 1 837 1244 117 16 0 chr4 33044488 33044676 -122585444 - B2_Mm2 SINE B2 -3 192 2 1 837 703 175 78 83 chr4 33045487 33045680 -122584440 + B3A SINE B2 1 192 -6 1 837 905 239 53 10 chr4 33045689 33045896 -122584224 + B3 SINE B2 1 216 0 1 837 1204 61 0 13 chr4 33045931 33046080 -122584040 + B1_Mus2 SINE Alu 1 147 0 1 837 271 283 21 11 chr4 33046371 33046464 -122583656 + PB1 SINE Alu 30 123 -4 1 837 362 246 38 132 chr4 33046543 33046554 -122583566 - B2_Mm1t SINE B2 -13 180 172 1 837 554 0 15 0 chr4 33046554 33046620 -122583500 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 837 662 227 47 17 chr4 33046620 33046773 -122583347 - B3 SINE B2 -34 182 30 1 837 734 280 142 80 chr4 33046775 33046840 -122583280 - ORR1E LTR MaLR 0 359 300 1 837 1599 43 0 0 chr4 33046840 33047027 -122583093 - B2_Mm1a SINE B2 -2 191 5 1 837 734 280 142 80 chr4 33047027 33047299 -122582821 - ORR1E LTR MaLR -60 299 1 1 837 1206 62 0 0 chr4 33047321 33047467 -122582653 - B1_Mm SINE Alu 0 147 2 1 837 192 160 0 0 chr4 33047515 33047541 -122582579 + T-rich Low_complexity Low_complexity 28 53 0 1 837 937 62 133 0 chr4 33047541 33047669 -122582451 - B1_Mm SINE Alu 0 147 3 1 837 192 160 0 0 chr4 33047669 33047692 -122582428 + T-rich Low_complexity Low_complexity 5 27 0 1 837 1183 62 0 0 chr4 33047705 33047851 -122582269 + B1_Mus2 SINE Alu 2 147 0 1 837 1345 96 17 0 chr4 33047858 33048036 -122582084 - B2_Mm2 SINE B2 -14 181 1 1 837 512 252 9 0 chr4 33048179 33048286 -122581834 + PB1D10 SINE Alu 10 117 0 1 837 2692 70 231 2 chr4 33048597 33049030 -122581090 + RLTR47_MM LTR ERV1 1 532 0 1 837 237 178 0 0 chr4 33049084 33049129 -122580991 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 837 626 271 46 37 chr4 33049157 33049375 -122580745 + ID_B1 SINE B4 3 222 -2 1 837 1201 68 0 0 chr4 33049408 33049555 -122580565 - B1_Mus1 SINE Alu 0 148 2 1 837 207 100 0 0 chr4 33050006 33050036 -122580084 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 1 837 1136 69 28 0 chr4 33050036 33050180 -122579940 - B1_Mus1 SINE Alu 0 148 1 1 837 750 196 7 40 chr4 33050184 33050333 -122579787 - B1_Mur3 SINE Alu -1 148 5 1 837 231 274 48 16 chr4 33050368 33050431 -122579689 + RMER15 LTR ERVL 1 65 -510 1 837 1397 240 40 40 chr4 33050446 33050824 -122579296 + RMER15 LTR ERVL 27 404 -171 1 837 1841 161 13 91 chr4 33050808 33051183 -122578937 - ORR1B1 LTR MaLR -8 386 41 1 837 706 231 104 0 chr4 33051190 33051363 -122578757 + RMER15 LTR ERVL 383 573 -2 1 837 411 316 32 68 chr4 33051409 33051630 -122578490 - MLT1H LTR MaLR -5 484 272 1 837 580 179 19 0 chr4 33051631 33051737 -122578383 + ORR1C2 LTR MaLR 3 110 -264 1 837 225 0 0 0 chr4 33052247 33052272 -122577848 + (A)n Simple_repeat Simple_repeat 1 25 0 1 837 1024 153 39 17 chr4 33052272 33052451 -122577669 + ORR1C2 LTR MaLR 202 384 0 1 837 489 216 381 12 chr4 33052490 33052642 -122577478 - MT2A LTR ERVL 0 533 326 1 837 275 323 124 16 chr4 33052668 33052797 -122577323 - MT2A LTR ERVL -309 224 82 1 837 628 191 80 14 chr4 33052806 33052944 -122577176 + B1_Mur3 SINE Alu 3 149 0 1 837 701 206 210 34 chr4 33053006 33053182 -122576938 - B3 SINE B2 -9 207 1 1 837 382 324 119 42 chr4 33053330 33053663 -122576457 - RMER20B LTR ERVK -208 419 14 1 837 674 269 110 97 chr4 33053676 33054067 -122576053 + BGLII_B LTR ERVK 19 414 -27 1 837 592 233 8 8 chr4 33054083 33054213 -122575907 - RLTR16 LTR ERVK -375 130 1 1 837 306 176 0 0 chr4 33054217 33054268 -122575852 - MT2A LTR ERVL -423 52 2 1 837 419 273 161 63 chr4 33054300 33054554 -122575566 - MLT1H LTR MaLR -267 282 4 1 837 205 274 20 0 chr4 33054595 33054646 -122575474 + L2 LINE L2 2839 2890 -529 1 837 1524 189 7 117 chr4 33054847 33055223 -122574897 + ORR1A4 LTR MaLR 15 329 0 1 837 375 60 0 0 chr4 33055223 33055273 -122574847 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 837 1357 85 0 6 chr4 33055273 33055450 -122574670 - B2_Mm2 SINE B2 -19 176 1 1 837 740 118 55 0 chr4 33055450 33055560 -122574560 - ORR1A1 LTR MaLR -42 284 169 1 837 632 194 13 34 chr4 33055568 33055587 -122574533 + ID_B1 SINE B4 78 223 -1 1 837 1038 69 0 0 chr4 33055587 33055717 -122574403 + B1_Mm SINE Alu 17 146 -1 1 837 2239 166 46 35 chr4 33055743 33056231 -122573889 + RMER13A LTR ERVK 50 908 0 1 837 912 178 0 7 chr4 33056231 33056382 -122573738 - ORR1A1 LTR MaLR -153 193 44 1 837 4308 47 4 4 chr4 33056393 33056905 -122573215 + RLTR1B LTR ERV1 1 512 0 1 837 699 99 0 0 chr4 33056905 33057006 -122573114 + (TC)n Simple_repeat Simple_repeat 1 101 0 1 837 1034 93 0 0 chr4 33057006 33057145 -122572975 - B1_Mm SINE Alu -6 141 3 1 837 460 216 8 98 chr4 33057035 33057158 -122572962 - MT2B LTR ERVL -337 264 153 1 837 332 109 36 0 chr4 33057142 33057197 -122572923 - ORR1A1 LTR MaLR -270 57 1 1 837 324 0 0 0 chr4 33057273 33057309 -122572811 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 837 770 108 57 65 chr4 33057310 33057471 -122572649 - B2_Mm2 SINE B2 -17 199 3 1 837 329 276 10 39 chr4 33057968 33058070 -122572050 + PB1D10 SINE Alu 5 103 -14 1 837 378 0 0 0 chr4 33058071 33058113 -122572007 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 1 837 218 261 0 0 chr4 33058134 33058180 -122571940 + B3 SINE B2 47 92 -124 1 837 287 226 16 0 chr4 33058192 33058254 -122571866 + B3 SINE B2 150 212 -4 1 837 922 204 180 28 chr4 33058345 33058562 -122571558 + MTD LTR MaLR 16 265 -154 1 837 1161 71 95 0 chr4 33058562 33058730 -122571390 - B2_Mm2 SINE B2 -11 184 1 1 837 835 253 70 31 chr4 33058733 33058961 -122571159 + ORR1C2 LTR MaLR 148 384 0 1 837 1362 76 60 0 chr4 33059710 33059894 -122570226 - B2_Mm2 SINE B2 0 195 1 1 837 243 150 0 0 chr4 33060142 33060202 -122569918 + (T)n Simple_repeat Simple_repeat 1 60 0 1 837 306 130 19 0 chr4 33060202 33060254 -122569866 - B1_Mur3 SINE Alu 0 149 97 2 837 1141 182 10 10 chr4 33060254 33060448 -122569672 - RLTR1D LTR ERV1 0 605 412 2 837 1440 72 10 0 chr4 33060446 33060640 -122569480 - RLTR1C LTR ERV1 -307 196 1 2 837 554 68 0 0 chr4 33060640 33060713 -122569407 - B1_Mus1 SINE Alu -49 99 27 2 837 4160 151 163 104 chr4 33060964 33061277 -122568843 + RLTR25A LTR ERVK 7 328 -775 2 837 1156 71 0 0 chr4 33061277 33061418 -122568702 + B1_Mus2 SINE Alu 1 141 -6 2 837 4160 151 163 104 chr4 33061418 33061442 -122568678 + RLTR25A LTR ERVK 329 329 -774 2 837 1105 109 0 0 chr4 33061442 33061589 -122568531 + B1_Mus1 SINE Alu 1 147 -1 2 837 4160 151 163 104 chr4 33061589 33062286 -122567834 + RLTR25A LTR ERVK 329 1103 0 2 837 600 276 61 70 chr4 33062479 33062903 -122567217 - RLTR12B LTR ERVK -69 290 1 2 837 1102 85 30 128 chr4 33062912 33063115 -122567005 - B2_Mm1t SINE B2 -8 185 3 2 837 21 0 0 0 chr4 33063123 33063144 -122566976 + AT_rich Low_complexity Low_complexity 1 21 0 2 837 554 53 0 0 chr4 33063144 33063219 -122566901 - B1_Mur4 SINE Alu 0 150 76 2 837 1186 68 7 0 chr4 33063476 33063622 -122566498 + B1_Mus1 SINE Alu 1 147 -1 2 837 1573 27 32 0 chr4 33063627 33063813 -122566307 + B2_Mm1a SINE B2 2 193 0 2 837 431 91 0 0 chr4 33063831 33063886 -122566234 + ORR1A3 LTR MaLR 272 326 0 2 837 356 260 0 25 chr4 33063887 33063966 -122566154 - BC1_Mm scRNA scRNA -67 85 9 2 837 363 248 19 9 chr4 33063975 33064081 -122566039 - PB1D10 SINE Alu -8 109 3 2 837 22 0 0 0 chr4 33064663 33064685 -122565435 + AT_rich Low_complexity Low_complexity 1 22 0 2 837 513 0 0 0 chr4 33065150 33065207 -122564913 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 837 1332 203 32 66 chr4 33065211 33065559 -122564561 - RMER16 LTR ERVK 0 533 198 2 837 2238 152 8 121 chr4 33065508 33066011 -122564109 + RLTR19A LTR ERVK 51 496 0 2 837 311 200 0 103 chr4 33066181 33066259 -122563861 + RMER16 LTR ERVK 1 70 -463 2 837 855 172 0 0 chr4 33066256 33066384 -122563736 - B1_Mur2 SINE Alu -16 133 6 2 837 395 271 0 109 chr4 33066276 33066413 -122563707 - MT2B LTR ERVL -338 263 142 2 837 530 214 171 23 chr4 33066431 33066560 -122563560 + B1_Mur1 SINE Alu 2 149 0 2 837 198 0 0 0 chr4 33066581 33066603 -122563517 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 837 1487 135 4 21 chr4 33066605 33066839 -122563281 - RLTR14 LTR ERV1 0 382 153 2 837 1989 176 22 58 chr4 33066846 33067298 -122562822 - RMER10A LTR ERVL -6 436 1 2 837 435 204 37 154 chr4 33067298 33067460 -122562660 - RLTR14 LTR ERV1 -227 155 13 2 837 302 164 138 88 chr4 33067486 33067566 -122562554 + B1_Mur2 SINE Alu 54 137 -12 2 837 902 231 28 24 chr4 33067830 33068043 -122562077 + B3 SINE B2 1 214 -2 2 837 332 298 57 60 chr4 33068670 33068809 -122561311 + LTR33A LTR ERVL 81 216 -315 2 837 201 174 65 0 chr4 33068814 33068860 -122561260 + G-rich Low_complexity Low_complexity 2 50 0 2 837 786 81 24 0 chr4 33069324 33069448 -122560672 + (TC)n Simple_repeat Simple_repeat 1 127 0 2 837 234 179 0 0 chr4 33069911 33069967 -122560153 + (GGGTG)n Simple_repeat Simple_repeat 1 56 0 2 837 447 19 0 0 chr4 33070186 33070238 -122559882 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 837 23 0 0 0 chr4 33071105 33071128 -122558992 + AT_rich Low_complexity Low_complexity 1 23 0 2 837 495 266 112 21 chr4 33072394 33072582 -122557538 - B3 SINE B2 0 216 12 2 837 685 288 126 23 chr4 33073234 33073497 -122556623 + B4A SINE B4 2 291 -1 2 837 1144 117 27 22 chr4 33073600 33073783 -122556337 - B2_Mm2 SINE B2 -10 185 2 2 837 333 274 48 0 chr4 33074151 33074235 -122555885 + PB1D10 SINE Alu 1 88 -29 2 837 228 35 0 0 chr4 33074544 33074573 -122555547 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 2 837 1147 55 7 7 chr4 33074594 33074741 -122555379 + B1_Mm SINE Alu 1 147 0 2 837 24 0 0 0 chr4 33075280 33075304 -122554816 + AT_rich Low_complexity Low_complexity 1 24 0 2 837 371 247 0 0 chr4 33075401 33075474 -122554646 - B1_Mur1 SINE Alu -7 142 70 2 837 227 229 21 0 chr4 33075549 33075597 -122554523 + URR1B DNA MER1_type 5 53 -172 2 837 1030 51 72 14 chr4 33075608 33075746 -122554374 - B1_Mus1 SINE Alu -1 147 2 2 837 858 136 5 206 chr4 33075749 33075815 -122554305 + URR1B DNA MER1_type 37 102 -123 2 837 1375 85 5 11 chr4 33075815 33076005 -122554115 - B2_Mm1t SINE B2 -4 189 1 2 837 858 136 5 206 chr4 33076005 33076056 -122554064 + URR1B DNA MER1_type 103 130 -95 2 837 1124 101 0 0 chr4 33076056 33076204 -122553916 + B1_Mus1 SINE Alu 1 148 0 2 837 858 136 5 206 chr4 33076204 33076308 -122553812 + URR1B DNA MER1_type 131 214 -11 2 837 201 211 0 0 chr4 33076759 33076816 -122553304 + T-rich Low_complexity Low_complexity 1 57 0 2 837 899 188 82 11 chr4 33076821 33077004 -122553116 - B3 SINE B2 -5 211 16 2 837 656 276 91 5 chr4 33077041 33077227 -122552893 - B4 SINE B4 -1 291 90 2 837 306 0 0 0 chr4 33077233 33077267 -122552853 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 837 644 121 147 0 chr4 33077267 33077383 -122552737 - B1_Mur2 SINE Alu -12 137 5 2 837 1769 221 135 6 chr4 33078106 33078579 -122551541 - RMER5 LTR ERV1 0 534 1 2 837 369 0 0 0 chr4 33079486 33079527 -122550593 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 837 620 244 88 25 chr4 33079671 33079831 -122550289 + ID_B1 SINE B4 21 190 -34 2 837 1109 44 0 0 chr4 33079858 33079993 -122550127 - B1_Mus2 SINE Alu 0 147 13 2 837 896 74 66 7 chr4 33080169 33080305 -122549815 - B1_Mus1 SINE Alu 0 148 5 2 837 316 167 200 0 chr4 33080703 33080763 -122549357 + RSINE1 SINE B4 69 140 -25 2 837 555 216 124 22 chr4 33080857 33081042 -122549078 - L1MB8 LINE L1 -313 5865 5662 2 837 546 177 116 39 chr4 33081075 33081204 -122548916 + B1_Mus2 SINE Alu 1 139 -8 2 837 876 228 26 0 chr4 33081252 33081445 -122548675 - B3A SINE B2 0 198 1 2 837 398 268 124 21 chr4 33081541 33081686 -122548434 - L1MB8 LINE L1 -1072 5074 4915 2 837 415 283 10 2 chr4 33081687 33081792 -122548328 - PB1D10 SINE Alu -35 112 4 2 837 234 264 94 75 chr4 33081902 33081953 -122548167 - B2_Mm1a SINE B2 -1 192 143 2 837 345 24 0 0 chr4 33081953 33081995 -122548125 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 837 305 218 155 24 chr4 33081995 33082100 -122548020 - B3 SINE B2 -68 148 34 2 837 877 149 6 49 chr4 33082100 33082259 -122547861 + B1_Mur4 SINE Alu 2 148 -2 2 837 987 161 128 5 chr4 33083543 33083730 -122546390 - B3 SINE B2 -5 211 2 2 837 546 309 172 17 chr4 33083765 33084183 -122545937 - Charlie2b DNA MER1_type -506 2276 1794 2 837 557 278 30 45 chr4 33085025 33085225 -122544895 - B3A SINE B2 0 198 2 2 837 201 182 0 0 chr4 33085298 33085331 -122544789 + T-rich Low_complexity Low_complexity 1 33 0 2 837 237 283 0 0 chr4 33085391 33085444 -122544676 + T-rich Low_complexity Low_complexity 1 53 0 2 837 428 161 183 36 chr4 33085459 33085588 -122544532 - B1F SINE Alu 0 148 5 2 837 301 285 98 98 chr4 33085612 33085826 -122544294 + B4A SINE B4 78 291 -1 2 837 1230 55 0 0 chr4 33085917 33086063 -122544057 - B1_Mus1 SINE Alu -1 147 2 2 837 316 247 14 2 chr4 33086088 33086160 -122543960 - ID4 SINE ID -9 74 3 2 837 570 211 35 132 chr4 33086333 33086354 -122543766 - B2_Mm2 SINE B2 -17 178 162 2 837 243 61 0 0 chr4 33086354 33086387 -122543733 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 837 666 211 35 132 chr4 33086387 33086562 -122543558 - B3A SINE B2 -33 165 1 2 837 753 152 30 15 chr4 33086616 33086750 -122543370 + B1_Mur2 SINE Alu 1 136 -13 2 837 1174 123 53 0 chr4 33086784 33086955 -122543165 - B2_Mm2 SINE B2 -14 181 2 2 837 372 338 71 22 chr4 33087008 33087232 -122542888 - L1ME2 LINE L1 -6 6158 5924 2 837 225 0 0 0 chr4 33087487 33087512 -122542608 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 837 275 0 29 0 chr4 33087626 33087661 -122542459 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 837 807 184 7 20 chr4 33087703 33087853 -122542267 - B1_Mur2 SINE Alu -1 148 1 2 837 26 0 0 0 chr4 33087871 33087897 -122542223 + AT_rich Low_complexity Low_complexity 1 26 0 2 837 225 93 398 122 chr4 33088236 33088334 -122541786 - B2_Mm2 SINE B2 -4 191 67 2 837 1361 79 6 11 chr4 33088391 33088570 -122541550 - B2_Mm1t SINE B2 -14 179 2 2 837 1076 93 42 36 chr4 33088570 33088737 -122541383 - B2_Mm2 SINE B2 -25 170 3 2 837 359 316 66 0 chr4 33088766 33088902 -122541218 - RSINE1 SINE B4 -17 148 4 2 837 244 292 0 0 chr4 33089514 33089579 -122540541 + CT-rich Low_complexity Low_complexity 2 66 0 2 837 1160 34 0 39 chr4 33089579 33089760 -122540360 + (TCCC)n Simple_repeat Simple_repeat 1 174 0 2 837 616 191 62 16 chr4 33089762 33089890 -122540230 - B1_Mus1 SINE Alu -13 135 2 2 837 1036 62 39 0 chr4 33089943 33090072 -122540048 + B1_Mm SINE Alu 1 134 -13 2 837 962 102 113 13 chr4 33090169 33090328 -122539792 - B2_Mm2 SINE B2 -19 176 2 2 837 370 155 423 10 chr4 33090330 33090434 -122539686 - PB1D7 SINE Alu -1 148 2 2 837 22 0 0 0 chr4 33090477 33090499 -122539621 + AT_rich Low_complexity Low_complexity 1 22 0 2 837 354 254 159 32 chr4 33092470 33092558 -122537562 + RSINE1 SINE B4 2 109 -56 2 837 540 45 0 0 chr4 33092558 33092625 -122537495 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 2 837 354 254 159 32 chr4 33092625 33092662 -122537458 + RSINE1 SINE B4 110 143 -22 2 837 1260 131 11 0 chr4 33092735 33092926 -122537194 + B2_Mm1t SINE B2 1 193 0 2 837 1487 60 16 0 chr4 33093011 33093196 -122536924 - B2_Mm1a SINE B2 -4 189 2 2 837 1020 124 44 28 chr4 33093446 33093628 -122536492 + B2_Mm2 SINE B2 2 186 -9 2 837 1179 89 77 0 chr4 33093841 33094010 -122536110 - B2_Mm2 SINE B2 -12 183 2 2 837 307 141 410 0 chr4 33095723 33095801 -122534319 + MTC LTR MaLR 3 112 -309 2 837 311 202 82 62 chr4 33095788 33095837 -122534283 + RMER17D LTR ERVK 250 304 -585 3 837 516 32 0 0 chr4 33095837 33095899 -122534221 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 3 837 311 202 82 62 chr4 33095899 33096026 -122534094 + RMER17D LTR ERVK 305 441 -448 3 837 198 0 0 0 chr4 33096026 33096048 -122534072 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 3 837 311 202 82 62 chr4 33096048 33096113 -122534007 + RMER17D LTR ERVK 442 496 -393 3 837 497 143 132 0 chr4 33096049 33096140 -122533980 - B1_Mur4 SINE Alu -12 138 36 3 837 295 105 10 0 chr4 33096148 33096199 -122533921 + MTC LTR MaLR 88 151 -268 2 837 556 202 151 0 chr4 33096187 33096306 -122533814 + MTC LTR MaLR 277 413 -8 2 837 372 167 0 0 chr4 33096513 33096585 -122533535 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 837 21 0 0 0 chr4 33096659 33096680 -122533440 + AT_rich Low_complexity Low_complexity 1 21 0 3 837 944 66 80 7 chr4 33096684 33096821 -122533299 - B1_Mus2 SINE Alu 0 147 1 3 837 933 211 55 5 chr4 33097077 33097277 -122532843 - B3 SINE B2 -6 210 1 3 837 276 30 0 0 chr4 33097369 33097402 -122532718 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 3 837 313 266 55 24 chr4 33097402 33097458 -122532662 - L1MEg LINE L1 -4145 1939 1882 3 837 1505 52 15 35 chr4 33097458 33097656 -122532464 - B2_Mm2 SINE B2 0 195 2 3 837 313 266 55 24 chr4 33097656 33097726 -122532394 - L1MEg LINE L1 -4203 1881 1809 3 837 939 71 8 0 chr4 33097768 33097894 -122532226 + B1_Mm SINE Alu 21 147 0 3 837 412 254 8 73 chr4 33097977 33098100 -122532020 + PB1D10 SINE Alu 1 115 -2 3 837 1517 63 11 0 chr4 33098410 33098601 -122531519 - B2_Mm1t SINE B2 0 193 1 3 837 180 158 0 0 chr4 33098827 33098865 -122531255 + T-rich Low_complexity Low_complexity 1 38 0 3 837 24 0 0 0 chr4 33100229 33100253 -122529867 + GC_rich Low_complexity Low_complexity 1 24 0 3 837 929 140 0 0 chr4 33100848 33100984 -122529136 + B1_Mur3 SINE Alu 14 149 0 3 837 268 267 59 24 chr4 33101210 33101379 -122528741 + (TG)n Simple_repeat Simple_repeat 1 175 0 3 837 1673 108 20 8 chr4 33101379 33101632 -122528488 - RLTR22_Mur LTR ERVK 0 1848 1593 3 837 4841 89 62 14 chr4 33101833 33102574 -122527546 - RLTR22_Mur LTR ERVK -1071 777 1 3 837 437 291 65 65 chr4 33102807 33102976 -122527144 - B4A SINE B4 -2 290 122 3 837 304 284 75 96 chr4 33103046 33103093 -122527027 - L1MDa LINE L1 -4072 2561 2506 3 837 1179 91 101 11 chr4 33103093 33103271 -122526849 - B2_Mm2 SINE B2 -1 194 1 3 837 304 284 75 96 chr4 33103271 33103410 -122526710 - L1MDa LINE L1 -4128 2505 2379 3 837 260 236 28 0 chr4 33103548 33103620 -122526500 + ID4_ SINE ID 2 75 -8 3 837 438 197 137 4 chr4 33103783 33103983 -122526137 + Lx9 LINE L1 7387 7631 -13 3 837 256 212 56 56 chr4 33104182 33104272 -122525848 - L1MC4a LINE L1 -6 7876 7787 3 837 640 128 214 0 chr4 33104770 33104887 -122525233 - B1_Mur4 SINE Alu -3 147 6 3 837 219 132 204 19 chr4 33104958 33105012 -122525108 - B1_Mur2 SINE Alu 0 149 86 3 837 280 289 36 12 chr4 33105051 33105135 -122524985 - B4 SINE B4 -205 87 2 3 837 876 98 127 15 chr4 33106318 33106452 -122523668 + B1_Mur4 SINE Alu 1 149 -1 3 837 791 166 43 7 chr4 33107365 33107505 -122522615 - B1_Mus2 SINE Alu -1 146 2 3 837 796 270 27 23 chr4 33107804 33108024 -122522096 - ID_B1 SINE B4 0 224 4 3 837 337 347 17 8 chr4 33109157 33109276 -122520844 - PB1 SINE Alu -7 120 1 3 837 716 196 37 8 chr4 33109354 33109488 -122520632 - B1_Mur1 SINE Alu -6 143 6 3 837 287 245 83 21 chr4 33109799 33109895 -122520225 + MER5A DNA MER1_type 40 141 -48 3 837 248 269 35 58 chr4 33110544 33110651 -122519469 - ID2 SINE ID -50 102 2 3 837 5442 70 24 1 chr4 33111796 33112514 -122517606 - L1Md_F2 LINE L1 -5 6577 5844 3 837 24 77 0 0 chr4 33112540 33112592 -122517528 + AT_rich Low_complexity Low_complexity 1 52 0 3 837 794 238 72 0 chr4 33112599 33112792 -122517328 - B3 SINE B2 -7 209 3 3 837 237 33 0 0 chr4 33113050 33113080 -122517040 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 837 899 116 65 0 chr4 33113501 33113639 -122516481 - B1_Mus2 SINE Alu 0 147 1 3 837 3049 35 0 0 chr4 33114058 33114404 -122515716 - ORR1A1 LTR MaLR 0 346 1 3 837 381 187 168 76 chr4 33115476 33115661 -122514459 + RLTR42-int LTR ERVK 2665 2866 -2656 3 837 450 195 219 41 chr4 33115707 33115830 -122514290 - B1_Mus2 SINE Alu -2 145 1 3 837 22 0 0 0 chr4 33118393 33118415 -122511705 + GC_rich Low_complexity Low_complexity 1 22 0 3 837 23 54 0 0 chr4 33118595 33118632 -122511488 + GC_rich Low_complexity Low_complexity 1 37 0 3 837 37 23 0 0 chr4 33119455 33119499 -122510621 + AT_rich Low_complexity Low_complexity 1 44 0 3 837 733 129 105 0 chr4 33119780 33119904 -122510216 - B1_Mur4 SINE Alu -2 148 12 3 837 368 281 127 70 chr4 33119904 33119937 -122510183 - B4 SINE B4 -69 223 58 3 837 559 177 287 18 chr4 33120079 33120246 -122509874 - B3 SINE B2 -4 212 1 3 837 455 242 53 0 chr4 33120325 33120420 -122509700 + B1_Mur2 SINE Alu 1 100 -49 3 837 967 183 91 0 chr4 33121678 33121875 -122508245 - B3 SINE B2 0 216 2 3 837 279 0 0 0 chr4 33121909 33121940 -122508180 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 837 517 205 48 16 chr4 33121944 33122068 -122508052 - RSINE1 SINE B4 -35 130 3 3 837 27 0 0 0 chr4 33122072 33122099 -122508021 + AT_rich Low_complexity Low_complexity 1 27 0 3 837 1692 215 43 29 chr4 33122628 33123002 -122507118 - MTE2a LTR MaLR 0 379 1 3 837 720 264 197 10 chr4 33123010 33123305 -122506815 + MTE2a LTR MaLR 19 368 -11 3 837 407 225 117 0 chr4 33123347 33123458 -122506662 + MTC LTR MaLR 1 124 -297 3 837 570 111 22 0 chr4 33123517 33123607 -122506513 - B1_Mus2 SINE Alu -55 92 1 3 837 394 188 22 58 chr4 33123527 33123631 -122506489 - B4 SINE B4 -125 167 70 3 837 4637 62 0 0 chr4 33124254 33124821 -122505299 + L1_Mus1 LINE L1 6001 6567 0 3 837 216 316 48 67 chr4 33125669 33125774 -122504346 + MIR SINE MIR 154 256 -6 3 837 965 83 0 37 chr4 33125917 33126104 -122504016 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 837 355 271 6 6 chr4 33126644 33126670 -122503450 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 837 192 152 0 0 chr4 33126670 33126703 -122503417 + (CATG)n Simple_repeat Simple_repeat 3 35 0 3 837 355 271 6 6 chr4 33126703 33126854 -122503266 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 837 22 88 0 0 chr4 33127580 33127637 -122502483 + AT_rich Low_complexity Low_complexity 1 57 0 3 837 488 271 142 11 chr4 33128030 33128213 -122501907 - B4A SINE B4 -4 288 82 3 837 235 292 91 15 chr4 33128594 33128660 -122501460 - ID4_ SINE ID -11 72 2 3 837 674 213 116 39 chr4 33128666 33128846 -122501274 + B3 SINE B2 17 215 -1 3 837 402 154 123 2 chr4 33129230 33129334 -122500786 - B1_Mur2 SINE Alu -6 143 1 3 837 6321 82 16 8 chr4 33129557 33130433 -122499687 - Lx3A LINE L1 0 6981 6099 3 837 524 277 61 0 chr4 33130548 33130609 -122499511 - B3 SINE B2 -1 215 153 3 837 387 0 0 0 chr4 33130609 33130652 -122499468 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 837 524 277 61 0 chr4 33130652 33130738 -122499382 - B3 SINE B2 -64 152 60 3 837 227 277 15 15 chr4 33131656 33131722 -122498398 - MER46C DNA MER2_type -10 328 263 3 837 306 0 27 0 chr4 33132194 33132231 -122497889 + HAL1-3A_ME LINE L1 1975 2012 -846 3 837 297 170 27 34 chr4 33132258 33132404 -122497716 + (CA)n Simple_repeat Simple_repeat 1 145 0 3 837 478 276 49 7 chr4 33133211 33133353 -122496767 - RSINE1 SINE B4 -14 151 4 3 837 645 241 33 33 chr4 33133649 33133799 -122496321 + RSINE1 SINE B4 10 159 -6 3 837 783 182 8 0 chr4 33134027 33134148 -122495972 - B1_Mur4 SINE Alu -28 122 1 3 837 547 270 7 28 chr4 33134028 33134169 -122495951 - ID_B1 SINE B4 -26 198 61 3 837 520 232 0 10 chr4 33134234 33134334 -122495786 - PB1D10 SINE Alu -1 116 18 3 837 1432 55 38 0 chr4 33134500 33134683 -122495437 - B2_Mm2 SINE B2 -5 190 1 3 837 559 235 125 27 chr4 33134698 33134882 -122495238 - MIR SINE MIR 0 262 61 3 837 339 299 0 0 chr4 33135416 33135493 -122494627 - ID4 SINE ID -1 82 6 3 837 308 321 28 0 chr4 33135503 33135609 -122494511 - PB1D10 SINE Alu -8 109 1 3 837 323 309 123 13 chr4 33138026 33138180 -122491940 - Tigger16b DNA Tigger -1 336 166 3 837 492 303 150 49 chr4 33139588 33139834 -122490286 - RMER15 LTR ERVL -18 557 287 3 837 557 169 142 30 chr4 33140393 33140527 -122489593 + B1F1 SINE Alu 1 149 0 3 837 25 0 0 0 chr4 33140530 33140555 -122489565 + AT_rich Low_complexity Low_complexity 1 25 0 3 837 490 299 50 28 chr4 33141448 33141589 -122488531 + ID_B1 SINE B4 79 222 -2 3 837 362 271 33 17 chr4 33141606 33141726 -122488394 + L1M4 LINE L1 5327 5448 -736 3 837 245 217 34 70 chr4 33141776 33141965 -122488155 - RMER17D LTR ERVK -283 468 234 3 837 688 249 81 0 chr4 33141911 33142084 -122488036 + B3 SINE B2 29 215 -1 3 837 1345 168 26 34 chr4 33143593 33143976 -122486144 + RLTR24 LTR ERV1 3 449 -80 3 837 758 121 27 36 chr4 33143977 33144121 -122485999 + B1_Mur4 SINE Alu 3 150 0 3 837 451 96 27 0 chr4 33144132 33144205 -122485915 + RLTR24 LTR ERV1 455 529 0 3 837 956 112 12 17 chr4 33144383 33144556 -122485564 + (TTCTC)n Simple_repeat Simple_repeat 3 174 0 3 837 201 254 0 0 chr4 33144559 33144614 -122485506 + CT-rich Low_complexity Low_complexity 2 56 0 3 837 233 29 29 0 chr4 33144679 33144713 -122485407 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 837 204 67 0 0 chr4 33144897 33144927 -122485193 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 837 303 218 105 38 chr4 33145546 33145600 -122484520 + RLTR19-int LTR ERVK 1108 1171 -4351 3 837 1176 89 0 0 chr4 33145600 33145780 -122484340 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 837 303 218 105 38 chr4 33145780 33145830 -122484290 + RLTR19-int LTR ERVK 1172 1218 -4304 3 837 1365 209 30 8 chr4 33146107 33146372 -122483748 + RLTR14 LTR ERV1 48 318 -64 4 837 425 192 104 19 chr4 33146546 33146652 -122483468 + RLTR19-int LTR ERVK 1870 1984 -3538 3 837 2731 249 133 125 chr4 33146651 33148590 -122481530 + RLTR19-int LTR ERVK 2428 4381 -1756 3 837 995 207 134 48 chr4 33148787 33149101 -122481019 + RLTR24 LTR ERV1 1 341 -188 4 837 372 143 21 97 chr4 33149080 33149173 -122480947 + RLTR24 LTR ERV1 444 529 0 4 837 189 0 0 0 chr4 33149637 33149658 -122480462 + (T)n Simple_repeat Simple_repeat 1 21 0 4 837 297 0 0 0 chr4 33151333 33151366 -122478754 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 837 234 0 0 0 chr4 33151366 33151391 -122478729 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 837 247 255 141 10 chr4 33153515 33153614 -122476506 + LTR85c LTR Gypsy? 552 663 -160 4 837 1749 159 162 0 chr4 33153627 33153985 -122476135 + MTD LTR MaLR 1 416 -3 4 837 186 71 0 0 chr4 33154084 33154112 -122476008 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 837 835 145 61 0 chr4 33154113 33154244 -122475876 - B1_Mur4 SINE Alu -2 148 10 4 837 406 272 29 0 chr4 33155336 33155472 -122474648 + L1MC1 LINE L1 6084 6223 -110 4 837 459 152 0 0 chr4 33155557 33155636 -122474484 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 4 837 212 214 56 28 chr4 33155682 33155754 -122474366 - L2 LINE L2 -1604 1815 1742 4 837 443 310 63 6 chr4 33156335 33156494 -122473626 + MER3 DNA MER1_type 14 181 -28 4 837 187 73 116 47 chr4 33156940 33156983 -122473137 + MER5A DNA MER1_type 144 189 0 4 837 1459 63 26 0 chr4 33157107 33157296 -122472824 - B2_Mm2 SINE B2 0 195 2 4 837 367 284 42 0 chr4 33157297 33157392 -122472728 - MER5B DNA MER1_type -77 101 3 4 837 803 153 15 13 chr4 33157838 33157986 -122472134 - B1_Mur2 SINE Alu -8 141 1 4 837 939 43 0 0 chr4 33158677 33158793 -122471327 + (CAAAG)n Simple_repeat Simple_repeat 2 117 0 4 837 289 295 0 0 chr4 33158978 33159056 -122471064 - MLT1A0 LTR MaLR -7 358 281 4 837 180 0 0 0 chr4 33159345 33159365 -122470755 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 4 837 330 310 64 11 chr4 33159434 33159564 -122470556 + MIRb SINE MIR 96 216 -60 4 837 251 237 67 17 chr4 33159668 33159728 -122470392 - RSINE1 SINE B4 -88 77 15 4 837 281 208 64 127 chr4 33160100 33160132 -122469988 - B4A SINE B4 -189 103 1 4 837 427 205 0 0 chr4 33160132 33160210 -122469910 - B2_Mm2 SINE B2 -117 78 1 4 837 259 208 9 38 chr4 33160355 33160460 -122469660 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 837 428 231 11 11 chr4 33160482 33160657 -122469463 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 837 276 53 0 0 chr4 33160753 33160791 -122469329 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 837 369 109 0 0 chr4 33160955 33161010 -122469110 + (TCC)n Simple_repeat Simple_repeat 2 56 0 4 837 315 0 0 0 chr4 33161007 33161042 -122469078 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 104 1259 44 12 12 chr4 33161152 33161314 -122468806 - B2_Mm2 SINE B2 -5 190 29 4 838 284 232 94 35 chr4 33162657 33162742 -122467378 - MIRc SINE MIR -129 139 50 4 838 752 96 9 0 chr4 33163049 33163164 -122466956 + (GA)n Simple_repeat Simple_repeat 2 117 0 4 838 1433 147 80 0 chr4 33163517 33163768 -122466352 - RMER20A LTR ERVK -225 291 21 4 838 1176 91 0 0 chr4 33165149 33165325 -122464795 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 4 838 303 158 24 35 chr4 33165331 33165416 -122464704 + CT-rich Low_complexity Low_complexity 4 87 0 4 838 464 165 55 0 chr4 33165443 33165534 -122464586 + MTD LTR MaLR 128 223 -196 4 838 231 254 14 43 chr4 33165552 33165622 -122464498 - BC1_Mm scRNA scRNA -69 83 16 4 838 1991 178 90 0 chr4 33165939 33166116 -122464004 - MTD LTR MaLR -8 411 222 4 838 399 168 176 10 chr4 33166116 33166218 -122463902 - PB1D9 SINE Alu -1 119 1 4 838 1991 178 90 0 chr4 33166218 33166417 -122463703 - MTD LTR MaLR -198 221 2 4 838 276 375 12 0 chr4 33166981 33167061 -122463059 - ID4 SINE ID -1 82 2 4 838 228 278 90 57 chr4 33167061 33167183 -122462937 - L2b LINE L2 -6 3369 3244 4 838 216 214 0 35 chr4 33167538 33167596 -122462524 + CT-rich Low_complexity Low_complexity 1 56 0 4 838 931 138 202 22 chr4 33167616 33167794 -122462326 - B3 SINE B2 -6 210 1 4 838 261 0 0 0 chr4 33170078 33170107 -122460013 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 838 620 252 7 19 chr4 33170107 33170261 -122459859 - B3 SINE B2 -63 153 2 4 838 273 146 0 0 chr4 33170547 33170595 -122459525 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 838 311 260 59 20 chr4 33171572 33171674 -122458446 + PB1D7 SINE Alu 3 108 -12 4 838 195 129 0 0 chr4 33171674 33171705 -122458415 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 838 225 188 0 0 chr4 33173116 33173164 -122456956 + A-rich Low_complexity Low_complexity 1 48 0 4 838 7128 203 78 47 chr4 33173168 33174346 -122455774 - Lx7 LINE L1 -318 7378 6143 4 838 477 0 0 0 chr4 33174355 33174408 -122455712 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 4 838 1468 29 6 6 chr4 33174408 33174574 -122455546 - B2_Mm1a SINE B2 -26 167 1 4 838 7128 203 78 47 chr4 33174574 33174671 -122455449 - Lx7 LINE L1 -1554 6142 6041 4 838 2063 79 120 0 chr4 33174671 33174963 -122455157 - ORR1A2 LTR MaLR 0 327 1 4 838 7128 192 150 39 chr4 33174963 33175566 -122454554 - Lx7 LINE L1 -1656 6040 5458 4 838 976 156 200 0 chr4 33175566 33175746 -122454374 - B3 SINE B2 0 216 1 4 838 3601 187 179 36 chr4 33175746 33176249 -122453871 - Lx7 LINE L1 -423 5457 4814 4 838 7718 189 114 59 chr4 33176257 33176372 -122453748 - Lx7 LINE L1 -2291 3589 3481 4 838 656 45 11 0 chr4 33176372 33176460 -122453660 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 4 838 7718 206 129 50 chr4 33176460 33176752 -122453368 - Lx7 LINE L1 -2400 3480 3157 4 838 299 132 0 0 chr4 33176752 33176805 -122453315 - 5S rRNA rRNA -31 90 38 4 838 7718 206 129 50 chr4 33176805 33179117 -122451003 - Lx7 LINE L1 -2400 3156 585 4 838 810 226 6 45 chr4 33179721 33179897 -122450223 - B3 SINE B2 -6 210 42 4 838 243 173 0 0 chr4 33179897 33179949 -122450171 + A-rich Low_complexity Low_complexity 1 52 0 4 838 543 252 8 0 chr4 33180247 33180374 -122449746 + B4A SINE B4 101 228 -64 4 838 535 259 75 40 chr4 33180375 33180548 -122449572 + B3A SINE B2 2 180 -18 4 838 225 132 0 0 chr4 33180569 33180607 -122449513 + (ATG)n Simple_repeat Simple_repeat 3 40 0 4 838 402 259 124 9 chr4 33180608 33180721 -122449399 + B1_Mur1 SINE Alu 16 141 -8 4 838 252 154 0 0 chr4 33180721 33180773 -122449347 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 4 838 504 0 0 0 chr4 33181470 33181526 -122448594 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 838 1942 200 116 19 chr4 33181526 33182011 -122448109 - RMER15 LTR ERVL -43 532 1 4 838 369 0 0 0 chr4 33183167 33183208 -122446912 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 838 762 162 0 0 chr4 33183208 33183344 -122446776 + (TA)n Simple_repeat Simple_repeat 2 137 0 4 838 202 42 0 0 chr4 33183344 33183368 -122446752 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 838 345 142 91 8 chr4 33183979 33184100 -122446020 + CT-rich Low_complexity Low_complexity 3 133 0 4 838 839 152 11 17 chr4 33184145 33184325 -122445795 + C-rich Low_complexity Low_complexity 2 180 0 4 838 248 77 26 0 chr4 33184479 33184518 -122445602 + (CCCCCT)n Simple_repeat Simple_repeat 6 45 0 4 838 1064 199 18 9 chr4 33184841 33185064 -122445056 - URR1A DNA MER1_type -1 225 1 4 838 598 276 41 31 chr4 33185066 33185260 -122444860 - MER77 LTR ERVL -43 564 369 4 838 584 320 101 12 chr4 33185472 33185798 -122444322 - ORR1E LTR MaLR -4 355 1 4 838 260 198 70 58 chr4 33186503 33186589 -122443531 - MER3 DNA MER1_type -25 184 98 4 838 601 168 223 30 chr4 33186646 33186812 -122443308 - URR1B DNA MER1_type -27 198 1 4 838 288 256 12 12 chr4 33187487 33187570 -122442550 - Kanga1c DNA Tc2 -3 726 644 4 838 1094 87 0 13 chr4 33188940 33189048 -122441072 - Lx3A LINE L1 -961 6020 5914 4 838 696 24 0 0 chr4 33189048 33189130 -122440990 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 4 838 1094 87 0 13 chr4 33189130 33189173 -122440947 - Lx3A LINE L1 -1068 5913 5871 4 838 4759 60 62 5 chr4 33189173 33189798 -122440322 + Lx3_Mus LINE L1 6348 7008 -1 4 838 356 58 18 55 chr4 33189862 33189917 -122440203 + L1_Mus3 LINE L1 5869 5921 -645 4 838 2304 75 7 0 chr4 33189914 33190209 -122439911 + L1_Mus3 LINE L1 6258 6554 -84 4 838 6096 44 41 8 chr4 33190209 33190999 -122439121 + RLTR13A LTR ERVK 1 824 -31 4 838 3407 41 0 130 chr4 33190999 33191500 -122438620 - RLTR10C LTR ERVK 0 436 1 4 838 6096 44 41 8 chr4 33191500 33191537 -122438583 + RLTR13A LTR ERVK 825 855 0 4 838 612 47 0 0 chr4 33191537 33191622 -122438498 + L1_Mus3 LINE L1 6549 6633 -5 4 838 180 0 0 0 chr4 33191650 33191670 -122438450 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 838 1186 62 0 7 chr4 33191955 33192102 -122438018 - B1_Mus2 SINE Alu -1 146 1 4 838 496 196 47 89 chr4 33192204 33192371 -122437749 + B3 SINE B2 2 182 -16 4 838 234 194 0 0 chr4 33192376 33192443 -122437677 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 838 353 256 0 6 chr4 33192477 33192646 -122437474 + (CA)n Simple_repeat Simple_repeat 1 168 0 4 838 229 318 35 0 chr4 33193593 33193678 -122436442 + L2a LINE L2 3312 3399 -27 4 838 701 237 62 16 chr4 33193861 33194054 -122436066 + ID_B1 SINE B4 23 224 0 4 838 414 0 0 0 chr4 33194326 33194372 -122435748 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 838 239 262 169 32 chr4 33194491 33194504 -122435616 - L1MB8 LINE L1 -104 6074 6063 4 838 890 194 327 0 chr4 33194504 33194813 -122435307 - RMER17C LTR ERVK 0 410 1 4 838 239 262 169 32 chr4 33194813 33194988 -122435132 - L1MB8 LINE L1 -116 6062 5860 4 838 259 337 0 12 chr4 33195014 33195029 -122435091 - BC1_Mm scRNA scRNA -62 90 8 4 838 315 304 0 0 chr4 33195029 33195098 -122435022 - ID SINE ID -148 76 8 4 838 1201 259 79 15 chr4 33195118 33195855 -122434265 - L1MB7 LINE L1 -309 5875 5091 4 838 282 29 0 0 chr4 33195890 33195925 -122434195 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 838 672 136 327 18 chr4 33195994 33196159 -122433961 - B3 SINE B2 0 216 1 4 838 967 240 51 24 chr4 33196218 33196512 -122433608 - RLTR18B LTR ERVK -3 509 208 4 838 719 279 67 54 chr4 33196566 33196881 -122433239 - RLTR18 LTR ERVK -285 331 13 4 838 299 303 27 9 chr4 33197265 33197375 -122432745 - MLT1A LTR MaLR -12 362 251 4 838 1107 53 0 0 chr4 33198878 33199010 -122431110 + B1_Mus2 SINE Alu 2 133 -14 5 838 1029 110 0 0 chr4 33199010 33199164 -122430956 + (GAA)n Simple_repeat Simple_repeat 1 154 0 5 838 732 269 67 54 chr4 33199170 33199576 -122430544 - Lx5 LINE L1 -574 6886 6473 5 838 1817 214 110 23 chr4 33199577 33200051 -122430069 - RLTR20D LTR ERVK 0 568 54 5 838 1238 177 29 40 chr4 33200070 33200346 -122429774 + RLTR46 LTR ERVK 42 314 -6 5 838 1019 37 7 0 chr4 33200354 33200489 -122429631 + B1_Mm SINE Alu 12 147 0 5 838 24 0 0 0 chr4 33200489 33200513 -122429607 + AT_rich Low_complexity Low_complexity 1 24 0 5 838 255 75 25 0 chr4 33200513 33200553 -122429567 - RLTR16 LTR ERVK -464 41 1 5 838 769 294 9 14 chr4 33200558 33200775 -122429345 - Lx5 LINE L1 -723 6327 6112 5 838 3544 172 51 13 chr4 33200767 33201612 -122428508 + Lx6 LINE L1 5191 6057 -1403 5 838 1582 132 94 102 chr4 33201957 33202320 -122427800 - ORR1D1 LTR MaLR -14 360 1 5 838 528 269 20 14 chr4 33202968 33203115 -122427005 + B1F1 SINE Alu 1 148 -1 5 838 186 71 0 0 chr4 33203472 33203500 -122426620 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 838 257 211 0 0 chr4 33203503 33203555 -122426565 + MER66-int LTR ERV1 1570 1621 -5055 5 838 448 273 42 69 chr4 33204065 33204254 -122425866 - RLTR23 LTR ERV1 0 430 247 5 838 293 253 0 75 chr4 33204615 33204709 -122425411 + B1_Mur3 SINE Alu 19 105 -44 5 838 576 188 0 64 chr4 33204685 33204810 -122425310 - B3 SINE B2 -97 119 3 5 838 269 133 29 130 chr4 33204810 33204873 -122425247 + B1_Mur2 SINE Alu 83 138 -11 5 838 280 275 117 88 chr4 33205013 33205252 -122424868 + RLTR11A LTR ERVK 9 254 -274 5 838 1498 315 15 43 chr4 33206264 33206361 -122423759 + MYSERV6-int LTR ERVK 416 503 -8456 5 838 1104 88 6 12 chr4 33206361 33206534 -122423586 + (TTCTC)n Simple_repeat Simple_repeat 4 175 0 5 838 1498 315 15 43 chr4 33206534 33207039 -122423081 + MYSERV6-int LTR ERVK 504 1000 -7959 5 838 1176 66 18 0 chr4 33207040 33207206 -122422914 - B2_Mm2 SINE B2 -26 169 1 5 838 1369 192 80 0 chr4 33207206 33207477 -122422643 + RMER13A LTR ERVK 549 842 -18 5 838 348 282 41 163 chr4 33207640 33207983 -122422137 - L1MA6 LINE L1 -385 5915 5615 5 838 1649 105 68 22 chr4 33208171 33208482 -122421638 - RMER6A LTR ERVK -219 537 213 5 838 557 302 130 35 chr4 33208732 33208993 -122421127 - B4A SINE B4 -5 287 2 5 838 202 214 12 12 chr4 33209539 33209624 -122420496 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 838 1046 146 58 0 chr4 33209633 33209838 -122420282 - Lx9 LINE L1 -128 7516 7300 5 838 242 150 0 0 chr4 33209854 33209894 -122420226 - Lx9 LINE L1 -465 7179 7140 5 838 324 130 0 0 chr4 33209894 33209948 -122420172 - ORR1B1 LTR MaLR -1 393 340 5 838 3071 54 28 19 chr4 33209950 33210347 -122419773 + RLTR10C LTR ERVK 1 409 -27 5 838 3585 35 28 7 chr4 33210347 33210774 -122419346 + RLTR10C LTR ERVK 1 436 0 5 838 3071 54 28 19 chr4 33210774 33210808 -122419312 + RLTR10C LTR ERVK 410 436 0 5 838 1528 164 47 10 chr4 33210815 33211111 -122419009 - ORR1B1 LTR MaLR -86 308 2 5 838 3967 225 115 12 chr4 33211112 33212277 -122417843 - Lx9 LINE L1 -503 7141 5743 5 838 10558 157 59 52 chr4 33212735 33213169 -122416951 - L1_Rod LINE L1 -133 5714 5249 5 838 733 40 0 19 chr4 33213169 33213272 -122416848 + (TTCC)n Simple_repeat Simple_repeat 3 103 0 5 838 10558 157 59 52 chr4 33213272 33213825 -122416295 - L1_Rod LINE L1 -599 5248 4676 5 838 1055 101 93 27 chr4 33213825 33214008 -122416112 + B2_Mm2 SINE B2 1 195 0 5 838 10558 157 59 52 chr4 33214008 33215162 -122414958 - L1_Rod LINE L1 -1172 4675 3559 5 838 5475 73 20 1 chr4 33215162 33215875 -122414245 + L1_Mus3 LINE L1 5913 6638 0 5 838 10558 157 59 52 chr4 33215875 33215987 -122414133 - L1_Rod LINE L1 -2289 3558 3444 5 838 799 162 84 0 chr4 33215992 33216159 -122413961 + ORR1D1 LTR MaLR 1 181 -193 5 838 5547 152 108 127 chr4 33216178 33216763 -122413357 - L1_Rod LINE L1 -3218 2629 1970 5 838 1104 81 17 23 chr4 33216763 33216939 -122413181 - B2_Mm2 SINE B2 -10 185 11 5 838 5547 152 108 127 chr4 33216939 33217425 -122412695 - L1_Rod LINE L1 -3218 1969 1419 5 838 201 39 0 0 chr4 33217425 33217451 -122412669 + (TTG)n Simple_repeat Simple_repeat 1 26 0 5 838 5547 198 66 47 chr4 33217451 33218228 -122411892 - L1_Rod LINE L1 -4429 1418 608 5 838 389 275 55 0 chr4 33218555 33218646 -122411474 - PB1D10 SINE Alu -20 97 2 5 838 247 303 0 26 chr4 33218676 33218754 -122411366 + ID_B1 SINE B4 127 202 -22 5 838 324 0 0 0 chr4 33219227 33219263 -122410857 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 5 838 219 188 42 0 chr4 33219849 33219897 -122410223 + CT-rich Low_complexity Low_complexity 1 50 0 5 838 22 80 0 0 chr4 33219952 33220002 -122410118 + AT_rich Low_complexity Low_complexity 1 50 0 5 838 23 54 0 0 chr4 33220876 33220913 -122409207 + AT_rich Low_complexity Low_complexity 1 37 0 5 838 354 243 43 136 chr4 33220960 33221031 -122409089 - L1MA7 LINE L1 -73 6218 6163 5 838 993 193 42 24 chr4 33221031 33221243 -122408877 - B3 SINE B2 0 216 1 5 838 354 243 43 136 chr4 33221243 33221333 -122408787 - L1MA7 LINE L1 -129 6162 6072 5 838 311 267 158 33 chr4 33221473 33221593 -122408527 + ID_B1 SINE B4 86 220 -4 5 838 856 267 120 16 chr4 33221790 33222174 -122407946 - L1MA7 LINE L1 -384 5907 5484 5 838 1046 294 53 30 chr4 33222247 33222542 -122407578 - L1MA7 LINE L1 -825 5318 5013 5 838 1158 58 0 0 chr4 33222542 33222681 -122407439 - B1_Mus2 SINE Alu -8 139 1 5 838 1046 294 53 30 chr4 33222681 33222858 -122407262 - L1MA7 LINE L1 -1131 5012 4835 5 838 270 303 22 0 chr4 33222901 33222990 -122407130 - L1MA7 LINE L1 -1727 4413 4323 5 838 336 24 0 0 chr4 33223021 33223062 -122407058 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 838 345 328 112 21 chr4 33223263 33223450 -122406670 - L1ME4a LINE L1 -207 5917 5714 5 838 400 300 30 96 chr4 33223452 33223502 -122406618 - B2_Mm2 SINE B2 -9 186 145 5 838 394 48 63 0 chr4 33223502 33223565 -122406555 + (TATG)n Simple_repeat Simple_repeat 4 70 0 5 838 478 261 7 75 chr4 33223565 33223713 -122406407 - B3A SINE B2 -51 144 1 5 838 980 135 0 0 chr4 33223776 33223917 -122406203 + B1_Mur2 SINE Alu 1 141 -8 5 838 734 235 13 32 chr4 33224002 33224160 -122405960 + RSINE1 SINE B4 11 165 0 5 838 269 256 131 99 chr4 33224160 33224186 -122405934 + B3A SINE B2 37 198 0 5 838 269 157 98 0 chr4 33225131 33225182 -122404938 + ID_B1 SINE B4 133 188 -36 5 838 216 275 116 0 chr4 33225182 33225200 -122404920 + B1F1 SINE Alu 52 128 -21 5 838 449 149 277 0 chr4 33225216 33225310 -122404810 + ID_B1 SINE B4 83 202 -22 5 838 373 229 0 0 chr4 33225323 33225393 -122404727 + ID4 SINE ID 1 70 -13 5 838 853 234 39 44 chr4 33225978 33226184 -122403936 + B3 SINE B2 1 205 -11 5 838 198 0 0 0 chr4 33226184 33226206 -122403914 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 838 750 261 0 18 chr4 33226840 33227008 -122403112 + B3 SINE B2 52 216 0 5 838 593 250 7 27 chr4 33227055 33227203 -122402917 + B1F1 SINE Alu 5 149 0 5 838 237 139 0 0 chr4 33227207 33227250 -122402870 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 5 838 583 284 167 9 chr4 33227285 33227512 -122402608 - MLT2D LTR ERVL -147 267 5 5 838 2258 142 67 0 chr4 33227530 33227890 -122402230 + ORR1C2 LTR MaLR 1 384 0 5 838 2393 169 81 2 chr4 33227890 33228347 -122401773 + ORR1C2-int LTR MaLR 1 493 -1016 5 838 1003 273 25 59 chr4 33228347 33228400 -122401720 - ORR1D-int LTR MaLR -554 816 770 5 838 1629 47 0 0 chr4 33228400 33228593 -122401527 - B2_Mm1t SINE B2 0 193 1 5 838 1003 273 25 59 chr4 33228593 33228735 -122401385 - ORR1D-int LTR MaLR -601 769 623 5 838 1138 75 7 0 chr4 33228735 33228747 -122401373 - B1_Mus1 SINE Alu 0 148 137 5 838 337 20 0 39 chr4 33228747 33228799 -122401321 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 5 838 1138 75 7 0 chr4 33228799 33228933 -122401187 - B1_Mus1 SINE Alu -12 136 2 5 838 1003 273 25 59 chr4 33228933 33229059 -122401061 - ORR1D-int LTR MaLR -748 622 506 5 838 309 68 23 0 chr4 33229055 33229099 -122401021 + ORR1C2-int LTR MaLR 1465 1509 0 5 838 2061 119 119 0 chr4 33229099 33229442 -122400678 + ORR1C2 LTR MaLR 1 384 0 5 838 516 235 15 0 chr4 33229771 33229879 -122400241 - PB1D7 SINE Alu -10 110 1 5 838 1453 188 141 81 chr4 33230583 33230757 -122399363 - MTD LTR MaLR -13 406 207 5 838 818 191 140 26 chr4 33230757 33230950 -122399170 - B3 SINE B2 -1 215 1 5 838 1453 188 141 81 chr4 33230950 33231158 -122398962 - MTD LTR MaLR -213 206 1 5 838 1454 28 6 0 chr4 33231943 33232122 -122397998 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 838 190 252 26 30 chr4 33232182 33232255 -122397865 + MIRb SINE MIR 85 157 -111 5 838 245 373 45 11 chr4 33232828 33233007 -122397113 - LTR33 LTR ERVL -3 512 328 5 838 420 279 7 2 chr4 33233219 33233651 -122396469 + (TG)n Simple_repeat Simple_repeat 1 434 0 5 838 190 250 18 55 chr4 33234395 33234450 -122395670 + MER5A DNA MER1_type 80 132 -57 5 838 749 172 25 192 chr4 33234933 33235178 -122394942 - B3 SINE B2 -8 208 5 5 838 331 152 0 25 chr4 33235192 33235273 -122394847 + GA-rich Low_complexity Low_complexity 2 80 0 5 838 180 0 0 0 chr4 33236452 33236472 -122393648 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 838 260 324 73 20 chr4 33236495 33236646 -122393474 - RSINE1 SINE B4 -4 161 3 5 838 939 209 105 50 chr4 33236723 33237000 -122393120 - B4 SINE B4 0 292 1 5 838 857 213 122 0 chr4 33237534 33237722 -122392398 + B3 SINE B2 1 211 -5 5 838 512 240 10 0 chr4 33237953 33238057 -122392063 + PB1D10 SINE Alu 2 106 -11 5 838 856 210 6 17 chr4 33238058 33238237 -122391883 + Lx6 LINE L1 7056 7232 -228 5 838 186 271 21 0 chr4 33238491 33238539 -122391581 - MIRb SINE MIR -83 185 137 5 838 535 256 29 50 chr4 33238746 33238886 -122391234 + B1_Mur1 SINE Alu 6 142 -7 5 838 693 241 74 15 chr4 33239686 33239888 -122390232 - B3 SINE B2 0 216 3 5 838 504 0 0 0 chr4 33239910 33239966 -122390154 + (CAAAC)n Simple_repeat Simple_repeat 3 58 0 5 838 228 35 0 0 chr4 33239966 33239995 -122390125 + (CAA)n Simple_repeat Simple_repeat 1 29 0 5 838 1038 82 0 39 chr4 33240047 33240060 -122390060 - B1_Mus2 SINE Alu 0 147 140 5 838 183 42 0 0 chr4 33240060 33240084 -122390036 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 838 1038 82 0 39 chr4 33240084 33240183 -122389937 - B1_Mus2 SINE Alu -8 139 41 5 838 189 0 0 0 chr4 33240183 33240204 -122389916 + (C)n Simple_repeat Simple_repeat 1 21 0 5 838 1038 82 0 39 chr4 33240204 33240243 -122389877 - B1_Mus2 SINE Alu -107 40 2 5 838 295 203 92 26 chr4 33240439 33240515 -122389605 + ID2 SINE ID 3 83 0 5 838 252 86 0 0 chr4 33240532 33240567 -122389553 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 838 1326 71 66 0 chr4 33241163 33241346 -122388774 - B2_Mm2 SINE B2 0 195 1 5 838 209 112 99 12 chr4 33241512 33241593 -122388527 + (ATATG)n Simple_repeat Simple_repeat 2 89 0 5 838 326 122 40 98 chr4 33241598 33241834 -122388286 + (CATATA)n Simple_repeat Simple_repeat 1 222 0 5 838 307 226 55 126 chr4 33241868 33241932 -122388188 - MER63C DNA AcHobo -48 882 825 5 838 1214 220 38 76 chr4 33241932 33242326 -122387794 + MTE2a LTR MaLR 1 379 0 5 838 307 226 55 126 chr4 33242326 33242443 -122387677 - MER63C DNA AcHobo -106 824 714 5 838 562 330 72 0 chr4 33242533 33242769 -122387351 - MER63C DNA AcHobo -268 662 410 5 838 287 195 22 22 chr4 33242872 33242961 -122387159 + A-rich Low_complexity Low_complexity 2 90 0 6 838 2048 235 72 33 chr4 33242986 33243597 -122386523 - Lx7 LINE L1 -398 7298 6664 6 838 448 296 75 11 chr4 33244174 33244362 -122385758 - MLT2C1 LTR ERVL -180 217 18 6 838 304 169 59 94 chr4 33245338 33245423 -122384697 - B1F SINE Alu -2 147 66 6 838 238 148 85 85 chr4 33245544 33245603 -122384517 - B1F SINE Alu -25 124 66 6 838 411 278 0 0 chr4 33246430 33246527 -122383593 + ID_B1 SINE B4 128 224 0 6 838 181 348 0 0 chr4 33246739 33246808 -122383312 - MER5A DNA MER1_type -117 72 4 6 838 540 0 0 0 chr4 33246938 33246998 -122383122 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 838 185 290 14 28 chr4 33247514 33247585 -122382535 + MER5A DNA MER1_type 1 70 -119 6 838 749 194 7 15 chr4 33247634 33247770 -122382350 - B1_Mus2 SINE Alu -10 137 3 6 838 407 221 81 99 chr4 33247770 33247812 -122382308 - MT2B LTR ERVL -442 159 121 6 838 847 141 212 0 chr4 33248984 33249154 -122380966 - B3 SINE B2 -10 206 1 6 838 741 136 17 0 chr4 33249288 33249406 -122380714 + URR1B DNA MER1_type 56 175 -50 6 838 372 319 0 11 chr4 33251456 33251551 -122378569 + ID_B1 SINE B4 109 202 -22 6 838 324 298 127 17 chr4 33251552 33251733 -122378387 - Kanga2_a DNA Tc2 -214 674 474 6 838 1131 241 60 11 chr4 33251750 33252031 -122378089 - MLT1B LTR MaLR -18 372 78 6 838 1463 188 255 38 chr4 33252119 33252566 -122377554 + RMER15 LTR ERVL 32 575 0 6 838 253 140 103 17 chr4 33252626 33252684 -122377436 - MER2 DNA MER2_type -175 170 108 6 838 372 325 8 23 chr4 33252684 33252813 -122377307 + B4A SINE B4 1 127 -165 6 838 288 287 0 0 chr4 33252813 33252942 -122377178 + (TG)n Simple_repeat Simple_repeat 2 130 0 6 838 488 315 98 0 chr4 33252954 33253097 -122377023 + B4A SINE B4 130 286 -6 6 838 780 273 36 14 chr4 33253253 33253476 -122376644 - B4A SINE B4 -63 229 2 6 838 7842 186 68 13 chr4 33253493 33254959 -122375161 - Lx6 LINE L1 -10 7450 5905 6 838 36 23 0 0 chr4 33254965 33255008 -122375112 + AT_rich Low_complexity Low_complexity 1 43 0 6 838 631 27 0 0 chr4 33255008 33255083 -122375037 + ORR1A2 LTR MaLR 253 327 0 6 838 804 129 88 7 chr4 33255100 33255248 -122374872 - L1_Mur3 LINE L1 -910 4970 4811 6 838 1875 149 30 14 chr4 33255247 33255608 -122374512 + L1_Mur3 LINE L1 1553 1919 -3961 6 838 330 103 69 0 chr4 33255619 33255677 -122374443 + MTD LTR MaLR 350 411 -8 6 838 189 0 0 0 chr4 33255685 33255706 -122374414 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6 838 3187 111 44 18 chr4 33255732 33256235 -122373885 - Lx LINE L1 -7 6647 6132 6 838 655 75 0 87 chr4 33256235 33256261 -122373859 + L1_Mus2 LINE L1 6115 6133 -433 6 838 1788 99 27 0 chr4 33256261 33256524 -122373596 - L1_Mus3 LINE L1 0 6638 6369 6 838 655 75 0 87 chr4 33256524 33256600 -122373520 + L1_Mus2 LINE L1 6134 6208 -358 6 838 758 212 6 76 chr4 33256821 33256864 -122373256 - B1_Mur2 SINE Alu 0 149 118 6 838 1582 42 0 16 chr4 33256864 33257058 -122373062 - B2_Mm1a SINE B2 -2 191 1 6 838 758 212 6 76 chr4 33257058 33257172 -122372948 - B1_Mur2 SINE Alu -32 117 3 6 838 185 219 120 27 chr4 33257496 33257571 -122372549 - MIRc SINE MIR -63 205 124 6 838 183 42 0 0 chr4 33257794 33257818 -122372302 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 838 210 167 56 0 chr4 33258540 33258594 -122371526 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 838 22 35 0 0 chr4 33258972 33259001 -122371119 + AT_rich Low_complexity Low_complexity 1 29 0 6 838 232 246 40 40 chr4 33259709 33259785 -122370335 - MER58B DNA MER1_type -220 121 46 6 838 291 54 0 0 chr4 33260756 33260793 -122369327 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 838 701 246 94 0 chr4 33262504 33262707 -122367413 - ID_B1 SINE B4 -1 223 2 6 838 322 193 62 93 chr4 33263117 33263214 -122366906 - PB1D10 SINE Alu 0 117 24 6 838 721 265 76 10 chr4 33263981 33264179 -122365941 + ID_B1 SINE B4 6 216 -8 6 838 317 252 145 22 chr4 33264789 33264815 -122365305 - B4A SINE B4 -46 246 142 6 838 660 111 0 29 chr4 33264815 33264917 -122365203 - PB1D9 SINE Alu -5 115 17 6 838 396 0 0 0 chr4 33264932 33264976 -122365144 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 838 589 214 168 12 chr4 33265016 33265177 -122364943 + B3 SINE B2 1 186 -30 6 838 336 299 0 18 chr4 33265191 33265300 -122364820 + PB1D10 SINE Alu 1 107 -10 6 838 353 171 157 0 chr4 33265467 33265537 -122364583 + ID4 SINE ID 3 83 0 6 838 547 315 27 7 chr4 33265727 33265877 -122364243 + B3 SINE B2 48 200 -16 6 838 563 285 53 5 chr4 33265897 33266084 -122364036 + ID_B1 SINE B4 22 217 -7 6 838 873 279 21 21 chr4 33267016 33267298 -122362822 - B4 SINE B4 -10 282 1 6 838 311 98 0 0 chr4 33267463 33267504 -122362616 + 5S rRNA rRNA 1 41 -80 6 838 293 305 30 23 chr4 33267945 33268076 -122362044 - MIR SINE MIR -55 207 76 6 838 235 328 0 59 chr4 33269068 33269136 -122360984 + tRNA-Ala-GCG tRNA tRNA 1 64 -11 6 838 433 283 128 7 chr4 33269568 33269707 -122360413 + ID_B1 SINE B4 93 246 -46 6 838 936 138 14 0 chr4 33269802 33269947 -122360173 - B1_Mus1 SINE Alu -1 147 1 6 838 21 0 0 0 chr4 33269957 33269978 -122360142 + AT_rich Low_complexity Low_complexity 1 21 0 6 838 351 248 0 0 chr4 33270348 33270453 -122359667 + (TG)n Simple_repeat Simple_repeat 2 106 0 6 838 559 197 48 80 chr4 33270460 33270485 -122359635 - B3A SINE B2 -16 182 159 6 838 279 0 0 0 chr4 33270485 33270516 -122359604 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 838 559 197 48 80 chr4 33270516 33270678 -122359442 - B3A SINE B2 -40 158 1 6 838 202 232 0 18 chr4 33270795 33270852 -122359268 + GA-rich Low_complexity Low_complexity 4 59 0 6 838 537 256 78 0 chr4 33271010 33271139 -122358981 + B1_Mur1 SINE Alu 1 139 -10 6 838 542 333 20 7 chr4 33271324 33271475 -122358645 + RSINE1 SINE B4 3 155 -10 6 838 306 0 0 0 chr4 33271478 33271512 -122358608 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 838 737 42 11 0 chr4 33271518 33271613 -122358507 + B1_Mus2 SINE Alu 52 147 0 6 838 252 0 0 0 chr4 33271613 33271641 -122358479 + (A)n Simple_repeat Simple_repeat 1 28 0 6 838 325 338 87 58 chr4 33271877 33272015 -122358105 + RSINE1 SINE B4 12 153 -12 6 838 559 235 0 0 chr4 33272049 33272151 -122357969 + B1_Mur2 SINE Alu 26 127 -22 6 838 414 0 0 0 chr4 33272151 33272197 -122357923 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 838 976 242 45 0 chr4 33272214 33272402 -122357718 + ID_B1 SINE B4 15 211 -13 6 838 198 0 0 0 chr4 33272402 33272424 -122357696 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 838 656 269 44 34 chr4 33272440 33272644 -122357476 + ID_B1 SINE B4 2 207 -17 6 838 878 162 0 14 chr4 33272914 33273058 -122357062 + B1_Mur4 SINE Alu 2 143 -7 6 838 251 266 56 105 chr4 33272941 33273060 -122357060 + B4A SINE B4 111 222 -70 6 838 366 80 0 0 chr4 33273060 33273110 -122357010 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 6 838 251 266 56 105 chr4 33273110 33273133 -122356987 + B4A SINE B4 223 246 -46 6 838 349 234 91 0 chr4 33273660 33273737 -122356383 - PB1D10 SINE Alu -16 101 18 6 838 24 0 0 0 chr4 33275128 33275152 -122354968 + AT_rich Low_complexity Low_complexity 1 24 0 6 838 552 155 36 2 chr4 33275187 33275292 -122354828 - B1_Mur2 SINE Alu -11 138 2 6 838 22 56 0 0 chr4 33276051 33276087 -122354033 + GC_rich Low_complexity Low_complexity 1 36 0 6 838 450 0 0 0 chr4 33277044 33277094 -122353026 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 838 879 61 0 17 chr4 33277108 33277225 -122352895 + B1_Mm SINE Alu 15 129 -18 6 838 715 209 67 6 chr4 33277443 33277621 -122352499 - B3 SINE B2 -4 212 24 6 838 244 318 44 26 chr4 33277725 33277838 -122352282 - MIR SINE MIR -20 242 128 6 838 1815 147 32 42 chr4 33278342 33278444 -122351676 + ORR1C1 LTR MaLR 1 105 -273 6 838 2870 36 3 3 chr4 33278444 33278776 -122351344 + IAPEY3_LTR LTR ERVK 1 332 0 6 838 1815 147 32 42 chr4 33278776 33279050 -122351070 + ORR1C1 LTR MaLR 106 373 -5 6 838 346 295 84 0 chr4 33279116 33279211 -122350909 - B4A SINE B4 -188 104 2 6 838 210 24 70 23 chr4 33279447 33279490 -122350630 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 838 1918 124 117 9 chr4 33280416 33280758 -122349362 - ORR1C2 LTR MaLR -1 383 5 6 838 1478 168 43 25 chr4 33280763 33280875 -122349245 - ORR1C2-int LTR MaLR -2 1507 1400 6 838 313 148 0 33 chr4 33280875 33280955 -122349165 + Lx4A LINE L1 6964 7043 -15 6 838 387 0 0 0 chr4 33280955 33280998 -122349122 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 6 838 1478 168 43 25 chr4 33281008 33281219 -122348901 - ORR1C2-int LTR MaLR -110 1399 1178 6 838 356 248 55 62 chr4 33281232 33281378 -122348742 - RLTR14 LTR ERV1 -14 368 224 6 838 2153 170 65 12 chr4 33281665 33282065 -122348055 - MTC LTR MaLR 0 421 1 6 838 942 93 80 0 chr4 33282065 33282216 -122347904 + B2_Mm2 SINE B2 2 164 -31 6 838 543 141 0 0 chr4 33282675 33282767 -122347353 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 838 584 81 11 0 chr4 33283321 33283408 -122346712 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 838 195 42 0 0 chr4 33283763 33283787 -122346333 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 6 838 601 110 27 27 chr4 33283856 33283968 -122346152 - B1_Mus1 SINE Alu -1 147 36 6 838 387 0 0 0 chr4 33284151 33284194 -122345926 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 838 232 315 68 0 chr4 33284255 33284328 -122345792 - ID4_ SINE ID -2 81 4 6 838 21 57 0 0 chr4 33284353 33284388 -122345732 + AT_rich Low_complexity Low_complexity 1 35 0 6 838 1314 164 73 50 chr4 33284740 33285096 -122345024 + RLTR20A LTR ERVK 1 338 -196 7 838 264 216 18 110 chr4 33285215 33285324 -122344796 + MYSERV16_I-int LTR ERVK 144 242 -2600 7 838 4780 184 56 50 chr4 33285884 33287113 -122343007 + MYSERV16_I-int LTR ERVK 1 1834 -1008 7 838 1317 98 5 16 chr4 33287113 33287299 -122342821 - B2_Mm1t SINE B2 -9 184 1 7 838 4418 164 61 50 chr4 33287299 33288271 -122341849 + MYSERV16_I-int LTR ERVK 1210 2834 -8 7 838 1603 198 89 18 chr4 33288279 33288659 -122341461 + RLTR20A LTR ERVK 1 407 -134 7 838 706 199 6 49 chr4 33289055 33289219 -122340901 + RLTR20A LTR ERVK 378 534 0 7 838 1021 127 34 5 chr4 33289661 33289845 -122340275 + B2_Mm2 SINE B2 16 215 -1 7 838 296 282 61 129 chr4 33290152 33290185 -122339935 + B4 SINE B4 67 218 -74 7 838 615 223 46 0 chr4 33290185 33290315 -122339805 + B1F2 SINE Alu 6 141 -8 7 838 842 57 0 24 chr4 33290315 33290441 -122339679 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 7 838 3407 33 0 8 chr4 33290441 33290837 -122339283 - MTA_Mm LTR MaLR -3 393 1 7 838 307 328 200 43 chr4 33290873 33291198 -122338922 - MLT1J LTR MaLR -37 475 100 7 838 250 300 14 0 chr4 33291653 33291723 -122338397 + ID4 SINE ID 4 74 -9 7 838 275 295 71 40 chr4 33292019 33292118 -122338002 + PB1D10 SINE Alu 4 105 -12 7 838 213 146 0 0 chr4 33292118 33292166 -122337954 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 7 838 180 111 0 0 chr4 33292164 33292191 -122337929 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 7 839 468 0 0 0 chr4 33292301 33292353 -122337767 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 839 786 252 150 0 chr4 33292428 33292654 -122337466 + B4A SINE B4 17 276 -16 7 839 1911 210 77 66 chr4 33292875 33293435 -122336685 + RMER15 LTR ERVL 10 575 0 7 839 644 242 12 12 chr4 33293679 33293842 -122336278 - RSINE1 SINE B4 0 165 3 7 839 288 130 0 0 chr4 33293968 33294014 -122336106 + (TCC)n Simple_repeat Simple_repeat 3 48 0 7 839 244 310 37 110 chr4 33294149 33294162 -122335958 + B4 SINE B4 79 139 -153 7 839 463 286 8 8 chr4 33294162 33294296 -122335824 + B1F SINE Alu 7 140 -9 7 839 244 310 37 110 chr4 33294296 33294312 -122335808 + B4 SINE B4 140 229 -63 7 839 358 280 47 168 chr4 33294597 33294829 -122335291 - B4A SINE B4 -86 206 3 7 839 788 162 197 22 chr4 33295115 33295298 -122334822 - B3 SINE B2 -1 215 1 7 839 216 265 91 91 chr4 33295473 33295660 -122334460 - ID_B1 SINE B4 -35 189 3 7 839 42 65 0 0 chr4 33296178 33296255 -122333865 + GC_rich Low_complexity Low_complexity 1 77 0 7 839 23 33 0 0 chr4 33296361 33296391 -122333729 + GC_rich Low_complexity Low_complexity 1 30 0 7 839 267 0 0 65 chr4 33297227 33297273 -122332847 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 7 839 225 0 0 0 chr4 33297273 33297298 -122332822 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 839 293 219 0 47 chr4 33297301 33297387 -122332733 - ID_B1 SINE B4 -53 171 90 7 839 270 0 0 0 chr4 33297935 33297965 -122332155 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 839 256 197 15 4 chr4 33297997 33298065 -122332055 - Charlie8 DNA MER1_type -2283 145 80 7 839 495 232 123 0 chr4 33298074 33298212 -122331908 + RSINE1 SINE B4 2 156 -9 7 839 273 233 0 0 chr4 33298344 33298404 -122331716 + ID4_ SINE ID 5 64 -19 7 839 1547 58 5 0 chr4 33298507 33298698 -122331422 - B2_Mm1a SINE B2 -1 192 1 7 839 310 325 45 7 chr4 33298855 33299010 -122331110 + RSINE1 SINE B4 5 165 0 7 839 2898 106 17 10 chr4 33299080 33299498 -122330622 - MTC LTR MaLR 0 421 1 7 839 227 318 131 0 chr4 33299625 33299636 -122330484 - B1F SINE Alu -4 145 25 7 839 341 281 62 0 chr4 33299636 33299732 -122330388 - ID_B1 SINE B4 -17 207 106 7 839 193 236 19 136 chr4 33299773 33299816 -122330304 - MIR SINE MIR -110 152 112 7 839 1738 125 82 47 chr4 33299816 33300134 -122329986 - ORR1A4 LTR MaLR 0 329 1 7 839 193 236 19 136 chr4 33300134 33300193 -122329927 - MIR SINE MIR -151 111 62 7 839 565 93 9 9 chr4 33300478 33300586 -122329534 + (TTTTG)n Simple_repeat Simple_repeat 3 110 0 7 839 210 261 0 30 chr4 33300693 33300760 -122329360 + GA-rich Low_complexity Low_complexity 4 68 0 7 839 604 189 51 95 chr4 33300831 33300989 -122329131 - B4A SINE B4 0 292 142 7 839 1780 173 68 16 chr4 33301006 33301371 -122328749 - ORR1C2 LTR MaLR 0 384 1 7 839 287 215 24 60 chr4 33301382 33301466 -122328654 - Lx8 LINE L1 -820 6653 6573 7 839 1388 278 63 46 chr4 33301472 33302056 -122328064 - Lx7 LINE L1 -1324 6372 5779 7 839 5983 188 58 92 chr4 33302068 33302382 -122327738 - Lx7 LINE L1 0 7696 7377 7 839 413 19 19 0 chr4 33302382 33302436 -122327684 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 839 5983 188 58 92 chr4 33302436 33302906 -122327214 - Lx7 LINE L1 -320 7376 6936 7 839 2381 128 7 62 chr4 33302906 33303323 -122326797 - ORR1B1 LTR MaLR 0 394 1 7 839 5983 188 58 92 chr4 33303323 33303489 -122326631 - Lx7 LINE L1 -761 6935 6783 7 839 1455 78 11 0 chr4 33303489 33303680 -122326440 - B2_Mm2 SINE B2 -1 194 2 7 839 5983 188 58 92 chr4 33303680 33304187 -122325933 - Lx7 LINE L1 -914 6782 6288 7 839 971 195 16 0 chr4 33304209 33304399 -122325721 + B3 SINE B2 21 213 -3 7 839 561 209 214 18 chr4 33304422 33304646 -122325474 - L1_Mur3 LINE L1 -1241 4639 4372 7 839 919 229 26 0 chr4 33304666 33304858 -122325262 - B3 SINE B2 -13 203 7 7 839 738 235 174 14 chr4 33304882 33305158 -122324962 - L1_Mur3 LINE L1 -1539 4341 4022 7 839 3757 235 95 26 chr4 33305167 33306389 -122323731 - L1_Mur3 LINE L1 -2809 3077 1761 7 839 879 238 39 10 chr4 33306389 33306597 -122323523 + B3 SINE B2 3 216 0 7 839 2009 277 82 124 chr4 33306597 33306615 -122323505 - L1_Mur3 LINE L1 -4126 1760 1745 7 839 787 118 8 23 chr4 33306615 33306745 -122323375 + B1_Mur4 SINE Alu 22 149 -1 7 839 2009 277 82 124 chr4 33306745 33307289 -122322831 - L1_Mur3 LINE L1 -4126 1744 1244 7 839 661 153 43 21 chr4 33307351 33307491 -122322629 - B2_Mm2 SINE B2 0 195 53 7 839 645 86 0 0 chr4 33307457 33307550 -122322570 - B1_Mus2 SINE Alu -53 94 2 7 839 477 299 42 27 chr4 33307591 33307924 -122322196 - L1_Mur3 LINE L1 -6490 1222 885 7 839 226 316 62 10 chr4 33309606 33309617 -122320503 + ID_B1 SINE B4 76 176 -48 7 839 383 200 94 0 chr4 33309617 33309702 -122320418 + B1F2 SINE Alu 6 98 -51 7 839 2877 132 76 31 chr4 33309857 33310397 -122319723 + RMER4B LTR ERVK 22 585 0 7 839 442 244 165 0 chr4 33311175 33311290 -122318830 + B1_Mur1 SINE Alu 2 135 -14 7 839 513 0 0 0 chr4 33311291 33311348 -122318772 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 839 836 220 219 53 chr4 33311499 33311878 -122318242 - RMER10A LTR ERVL 0 442 1 7 839 851 64 0 67 chr4 33312023 33312157 -122317963 - L1_Mus1 LINE L1 0 6567 6443 7 839 1322 33 0 0 chr4 33312157 33312309 -122317811 + L1_Mus1 LINE L1 6275 6426 -141 7 839 776 75 0 0 chr4 33313504 33313611 -122316509 - B2_Mm2 SINE B2 -88 107 1 7 839 639 299 5 23 chr4 33313707 33313868 -122316252 - B4A SINE B4 0 292 134 7 839 360 0 0 0 chr4 33313868 33313908 -122316212 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 839 639 299 5 23 chr4 33313908 33313962 -122316158 - B4A SINE B4 -159 133 82 7 839 566 271 0 0 chr4 33313968 33314090 -122316030 - B1F1 SINE Alu -26 123 2 7 839 261 235 0 0 chr4 33314154 33314205 -122315915 + B1F2 SINE Alu 1 51 -98 7 839 290 232 40 50 chr4 33314308 33314408 -122315712 + B1F1 SINE Alu 1 99 -50 7 839 738 83 0 27 chr4 33314580 33314691 -122315429 - B1_Mus1 SINE Alu -1 147 40 7 839 284 204 101 61 chr4 33314625 33314724 -122315396 - RLTR25B LTR ERVK -519 509 407 7 839 330 272 0 0 chr4 33315045 33315137 -122314983 + ID_B1 SINE B4 124 215 -9 7 839 890 234 15 5 chr4 33315215 33315417 -122314703 + B4A SINE B4 67 270 -22 7 839 370 255 10 41 chr4 33315419 33315517 -122314603 + PB1D10 SINE Alu 15 109 -8 7 839 366 200 0 0 chr4 33315590 33315650 -122314470 + polypurine Low_complexity Low_complexity 1 60 0 7 839 336 262 83 46 chr4 33316164 33316272 -122313848 - PB1D10 SINE Alu 0 117 6 7 839 299 309 0 23 chr4 33316200 33316286 -122313834 - ID_B1 SINE B4 -68 156 73 7 839 269 258 30 0 chr4 33316395 33316461 -122313659 + ID_B1 SINE B4 82 149 -75 7 839 263 247 303 0 chr4 33316461 33316484 -122313636 + PB1D10 SINE Alu 1 116 -1 7 839 360 0 0 0 chr4 33316485 33316525 -122313595 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 839 343 286 0 0 chr4 33316690 33316774 -122313346 + BC1_Mm scRNA scRNA 2 85 -67 7 839 1061 105 6 0 chr4 33317004 33317166 -122312954 + (TTCCC)n Simple_repeat Simple_repeat 5 167 0 7 839 504 48 0 0 chr4 33317166 33317228 -122312892 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 7 839 778 121 30 0 chr4 33317230 33317362 -122312758 - B1_Mur3 SINE Alu -4 145 10 7 839 261 196 61 15 chr4 33317389 33317486 -122312634 - ORR1E LTR MaLR -211 148 24 7 839 680 227 176 0 chr4 33317593 33317769 -122312351 - B3 SINE B2 -9 207 1 7 839 272 163 206 52 chr4 33318944 33319041 -122311079 + PB1D10 SINE Alu 1 112 -5 7 839 232 286 79 169 chr4 33319337 33319514 -122310606 + RSINE1 SINE B4 5 165 0 7 839 255 204 25 49 chr4 33319574 33319639 -122310481 + B1F1 SINE Alu 1 69 -58 7 839 213 213 0 0 chr4 33319683 33319730 -122310390 + (CACG)n Simple_repeat Simple_repeat 4 50 0 7 839 219 103 0 0 chr4 33319731 33319770 -122310350 + (CAGAGA)n Simple_repeat Simple_repeat 3 41 0 7 839 385 304 15 7 chr4 33320517 33320653 -122309467 - RMER15 LTR ERVL -14 561 425 7 839 272 274 48 75 chr4 33320729 33320875 -122309245 - Lx8 LINE L1 -301 7172 7031 7 839 2626 130 27 64 chr4 33320954 33321473 -122308647 - RLTR24 LTR ERV1 0 529 30 7 839 1222 48 0 0 chr4 33321474 33321621 -122308499 + B1_Mus1 SINE Alu 2 148 0 7 839 32 32 0 46 chr4 33321730 33321766 -122308354 + AT_rich Low_complexity Low_complexity 1 35 0 7 839 3086 66 38 2 chr4 33321766 33322159 -122307961 - MTB_Mm LTR MaLR 0 407 1 7 839 1010 224 5 0 chr4 33322159 33322360 -122307760 - B3 SINE B2 -14 202 1 7 839 32 32 0 46 chr4 33322360 33322387 -122307733 + AT_rich Low_complexity Low_complexity 1 26 0 8 839 550 246 0 42 chr4 33322399 33322543 -122307577 - MTE2a LTR MaLR -87 292 155 8 839 1267 195 70 67 chr4 33322547 33322600 -122307520 - ORR1D1 LTR MaLR 0 374 322 8 839 719 200 29 0 chr4 33322600 33322740 -122307380 - B1_Mur3 SINE Alu -5 144 1 8 839 1267 195 70 67 chr4 33322740 33323059 -122307061 - ORR1D1 LTR MaLR -53 321 1 8 839 1932 164 45 45 chr4 33323059 33323481 -122306639 - ORR1D1-int LTR MaLR 0 1370 949 8 839 829 191 28 11 chr4 33323497 33323677 -122306443 + ORR1C2 LTR MaLR 202 384 0 8 839 1776 196 128 52 chr4 33323687 33324224 -122305896 - ORR1D1-int LTR MaLR -792 578 1 8 839 1089 181 291 40 chr4 33324224 33324523 -122305597 - ORR1D1 LTR MaLR 0 374 1 8 839 307 179 14 43 chr4 33324841 33324911 -122305209 + PB1D9 SINE Alu 53 120 0 8 839 431 299 68 7 chr4 33324997 33325145 -122304975 + RSINE1 SINE B4 1 157 -8 8 839 360 233 0 75 chr4 33325253 33325268 -122304852 + PB1D10 SINE Alu 2 16 -101 8 839 1791 156 62 88 chr4 33325268 33325655 -122304465 - ORR1C1 LTR MaLR 0 378 2 8 839 360 233 0 75 chr4 33325655 33325732 -122304388 + PB1D10 SINE Alu 17 87 -30 8 839 547 242 48 0 chr4 33325656 33325780 -122304340 + ID_B1 SINE B4 93 222 -2 8 839 27 0 0 0 chr4 33326091 33326118 -122304002 + AT_rich Low_complexity Low_complexity 1 27 0 8 839 442 248 26 9 chr4 33326685 33326799 -122303321 + PB1D10 SINE Alu 1 116 -1 8 839 299 244 49 0 chr4 33326922 33327004 -122303116 + ID_B1 SINE B4 82 167 -57 8 839 263 269 129 0 chr4 33327004 33327015 -122303105 + PB1D7 SINE Alu 1 105 -15 8 839 909 128 0 0 chr4 33327045 33327225 -122302895 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 839 821 150 0 6 chr4 33327253 33327434 -122302686 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 839 776 136 6 0 chr4 33327472 33327634 -122302486 + (CA)n Simple_repeat Simple_repeat 1 163 0 8 839 911 168 3 1 chr4 33327647 33328348 -122301772 + (CA)n Simple_repeat Simple_repeat 1 702 0 8 839 838 196 97 10 chr4 33328405 33328601 -122301519 + B3 SINE B2 1 213 -3 8 839 249 250 12 50 chr4 33329016 33329096 -122301024 - ID2 SINE ID -3 80 4 8 839 342 184 175 48 chr4 33329108 33329211 -122300909 + PB1D10 SINE Alu 2 117 0 8 839 263 259 106 44 chr4 33329307 33329420 -122300700 + PB1D7 SINE Alu 1 120 0 8 839 957 234 174 7 chr4 33329598 33329857 -122300263 + MTD LTR MaLR 52 346 -73 8 839 640 201 64 7 chr4 33329857 33329997 -122300123 - B1_Mur1 SINE Alu 0 149 2 8 839 957 234 174 7 chr4 33329997 33330047 -122300073 + MTD LTR MaLR 347 412 -7 8 839 377 219 158 50 chr4 33330399 33330500 -122299620 - PB1D9 SINE Alu -4 113 2 8 839 353 261 93 90 chr4 33330514 33330825 -122299295 + MTC-int LTR MaLR 157 540 -718 8 839 378 0 0 0 chr4 33331178 33331220 -122298900 + (GCTG)n Simple_repeat Simple_repeat 4 45 0 8 839 264 194 237 0 chr4 33331703 33331796 -122298324 + B3A SINE B2 57 171 -27 8 839 425 256 97 30 chr4 33331987 33332152 -122297968 + ID_B1 SINE B4 2 177 -47 8 839 24 32 0 0 chr4 33335114 33335145 -122294975 + GC_rich Low_complexity Low_complexity 1 31 0 8 839 742 181 0 20 chr4 33336386 33336533 -122293587 - B1_Mus1 SINE Alu 0 148 5 8 839 295 338 15 44 chr4 33336755 33336891 -122293229 + RSINE1 SINE B4 12 143 -22 8 839 342 45 0 0 chr4 33336905 33336949 -122293171 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 839 1201 62 0 0 chr4 33337188 33337334 -122292786 - B1_Mm SINE Alu 0 147 2 8 839 607 229 0 67 chr4 33337864 33338014 -122292106 - B1F2 SINE Alu -3 146 7 8 839 510 215 105 23 chr4 33338069 33338202 -122291918 + B1_Mur2 SINE Alu 6 149 0 8 839 454 289 24 0 chr4 33338283 33338415 -122291705 - ID_B1 SINE B4 -60 232 84 8 839 377 143 25 25 chr4 33339006 33339085 -122291035 - MT2A LTR ERVL -449 84 6 8 839 456 216 18 99 chr4 33339084 33339258 -122290862 + MT2B LTR ERVL 324 479 -122 8 839 1246 134 35 65 chr4 33339354 33339389 -122290731 + URR1B DNA MER1_type 1 35 -190 8 839 222 37 0 0 chr4 33339389 33339416 -122290704 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 839 1246 134 35 65 chr4 33339416 33339612 -122290508 + URR1B DNA MER1_type 36 225 0 8 839 442 310 0 65 chr4 33339767 33339922 -122290198 + RSINE1 SINE B4 1 145 -20 8 839 573 217 70 35 chr4 33340006 33340149 -122289971 + ID_B1 SINE B4 74 221 -3 8 839 288 247 133 10 chr4 33340500 33340598 -122289522 - PB1D10 SINE Alu -7 110 1 8 839 240 111 0 0 chr4 33340750 33340795 -122289325 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 8 839 732 187 28 14 chr4 33340800 33340941 -122289179 - B1F1 SINE Alu -6 143 1 8 839 368 244 63 31 chr4 33341174 33341301 -122288819 - ORR1E LTR MaLR -209 150 20 8 839 553 257 158 29 chr4 33341361 33341702 -122288418 + HAL1 LINE L1 1314 1698 -809 8 839 488 324 98 59 chr4 33341906 33342211 -122287909 + RLTR17 LTR ERVK 125 441 -251 8 839 692 236 194 23 chr4 33342220 33342437 -122287683 + RMER20B LTR ERVK 349 602 -25 8 839 600 249 23 129 chr4 33342538 33342579 -122287541 + B3A SINE B2 5 45 -153 8 839 212 0 0 35 chr4 33342579 33342608 -122287512 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 8 839 600 249 23 129 chr4 33342608 33342624 -122287496 + B3A SINE B2 46 47 -151 8 839 953 200 23 23 chr4 33342624 33342839 -122287281 + B3 SINE B2 2 216 0 8 839 600 249 23 129 chr4 33342839 33342997 -122287123 + B3A SINE B2 48 197 -1 8 839 385 300 81 32 chr4 33343039 33343163 -122286957 + ID_B1 SINE B4 93 222 -2 8 839 450 295 0 16 chr4 33343161 33343285 -122286835 + B1F1 SINE Alu 27 148 -1 8 839 865 194 0 46 chr4 33343362 33343535 -122286585 + B3 SINE B2 6 170 -46 8 839 632 45 11 0 chr4 33343728 33343816 -122286304 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 8 839 605 216 7 69 chr4 33343816 33343960 -122286160 - B1_Mur1 SINE Alu -5 144 10 8 839 388 222 12 58 chr4 33344095 33344181 -122285939 - B3A SINE B2 -114 84 3 8 839 549 212 117 0 chr4 33345384 33345521 -122284599 - B3A SINE B2 -45 153 1 8 839 495 266 42 0 chr4 33345560 33345703 -122284417 - B1_Mur2 SINE Alu 0 149 1 8 839 258 282 167 0 chr4 33345705 33345783 -122284337 - B1F2 SINE Alu -29 120 30 8 839 1861 179 58 21 chr4 33345912 33346341 -122283779 + RLTR11A2 LTR ERVK 83 527 0 8 839 198 0 0 0 chr4 33346364 33346386 -122283734 + (A)n Simple_repeat Simple_repeat 1 22 0 8 839 303 292 82 68 chr4 33346408 33346671 -122283449 + B4 SINE B4 1 270 -22 8 839 198 71 0 0 chr4 33346671 33346699 -122283421 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 839 303 292 82 68 chr4 33346699 33346714 -122283406 + B4 SINE B4 271 283 -9 8 839 249 293 40 0 chr4 33346738 33346813 -122283307 + B4A SINE B4 90 167 -125 8 839 532 192 0 20 chr4 33346750 33346851 -122283269 + PB1D10 SINE Alu 17 115 -2 8 839 647 268 29 24 chr4 33347053 33347229 -122282891 + B3A SINE B2 22 198 0 8 839 375 41 0 0 chr4 33347356 33347405 -122282715 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 839 2645 63 108 13 chr4 33347409 33347781 -122282339 + MTB_Mm LTR MaLR 1 407 0 8 839 274 156 15 15 chr4 33347867 33347932 -122282188 + CT-rich Low_complexity Low_complexity 2 66 0 8 839 279 255 213 0 chr4 33347932 33348026 -122282094 - ID_B1 SINE B4 -22 202 89 8 839 220 276 17 0 chr4 33348062 33348120 -122282000 + GA-rich Low_complexity Low_complexity 2 60 0 8 839 394 272 36 22 chr4 33349356 33349495 -122280625 - B1F1 SINE Alu -8 141 1 8 839 1592 36 0 30 chr4 33349535 33349734 -122280386 - B2_Mm2 SINE B2 -1 194 2 8 839 180 0 0 0 chr4 33349747 33349767 -122280353 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8 839 402 286 29 0 chr4 33349767 33349865 -122280255 - PB1D10 SINE Alu -12 105 5 8 839 276 294 33 56 chr4 33349789 33349879 -122280241 - B4A SINE B4 -125 167 80 8 839 329 255 103 9 chr4 33349932 33350039 -122280081 - RSINE1 SINE B4 -3 162 46 8 839 615 239 0 66 chr4 33350074 33350196 -122279924 + B1_Mur1 SINE Alu 6 123 -26 8 839 2394 155 33 35 chr4 33350196 33350394 -122279726 + MTC LTR MaLR 1 210 -211 8 839 1464 35 40 0 chr4 33350394 33350567 -122279553 + B2_Mm2 SINE B2 2 181 -14 8 839 267 31 0 0 chr4 33350571 33350603 -122279517 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 8 839 2394 155 33 35 chr4 33350603 33350821 -122279299 + MTC LTR MaLR 211 421 0 8 839 615 239 0 66 chr4 33350821 33350850 -122279270 + B1_Mur1 SINE Alu 124 147 -2 8 839 616 210 107 12 chr4 33350903 33351072 -122279048 + ORR1C2 LTR MaLR 200 384 0 8 839 679 181 136 34 chr4 33351072 33351249 -122278871 + B3 SINE B2 8 202 -14 8 839 398 273 18 26 chr4 33351260 33351373 -122278747 - PB1D9 SINE Alu -8 112 1 8 839 404 239 0 0 chr4 33351401 33351472 -122278648 - ID4 SINE ID -11 72 2 8 839 1369 237 78 48 chr4 33351472 33351901 -122278219 + L1_Rod LINE L1 4789 5231 -616 8 839 462 361 62 0 chr4 33351915 33352123 -122277997 + Lx9 LINE L1 6522 6742 -902 8 839 818 212 206 100 chr4 33352181 33352621 -122277499 - RLTR20C LTR ERVK 0 551 66 8 839 1114 55 13 27 chr4 33352700 33352850 -122277270 + B1_Mus1 SINE Alu 1 148 0 8 839 29 70 0 0 chr4 33352982 33353039 -122277081 + AT_rich Low_complexity Low_complexity 1 57 0 8 839 445 186 0 124 chr4 33353130 33353259 -122276861 - MT2B LTR ERVL -314 287 175 8 839 823 99 0 0 chr4 33353148 33353269 -122276851 - B1_Mus2 SINE Alu -26 121 1 8 839 246 250 0 16 chr4 33353162 33353284 -122276836 - ORR1B1-int LTR MaLR -755 754 635 8 839 250 317 187 0 chr4 33353440 33353563 -122276557 + RSINE1 SINE B4 4 149 -16 8 839 557 219 70 0 chr4 33353876 33354004 -122276116 - ID_B1 SINE B4 -1 223 87 8 839 998 233 168 25 chr4 33354110 33354268 -122275852 + MTD LTR MaLR 2 190 -229 8 839 2264 141 20 54 chr4 33354268 33354659 -122275461 + ORR1C1 LTR MaLR 1 378 0 8 839 998 233 168 25 chr4 33354659 33354786 -122275334 + MTD LTR MaLR 191 328 -91 8 839 237 211 0 0 chr4 33354813 33354865 -122275255 + CT-rich Low_complexity Low_complexity 1 52 0 8 839 1001 176 119 0 chr4 33354944 33355137 -122274983 - B3 SINE B2 0 216 1 8 839 352 286 165 22 chr4 33355137 33355319 -122274801 - B3 SINE B2 -2 214 7 8 839 505 215 192 0 chr4 33355468 33355598 -122274522 + B3A SINE B2 2 156 -42 9 839 297 0 0 0 chr4 33355626 33355659 -122274461 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 839 327 217 279 31 chr4 33355684 33355849 -122274271 + B3 SINE B2 11 216 0 9 839 232 264 0 0 chr4 33355894 33355947 -122274173 + ID_B1 SINE B4 108 160 -64 9 839 766 195 63 6 chr4 33355962 33356137 -122273983 - ORR1D1 LTR MaLR -4 370 186 9 839 511 274 27 0 chr4 33356149 33356295 -122273825 - MTE2b LTR MaLR 0 379 230 9 839 4167 61 60 8 chr4 33356849 33357381 -122272739 - LTRIS2 LTR ERV1 0 564 5 9 839 304 242 0 0 chr4 33358257 33358319 -122271801 - MTE2b LTR MaLR -317 62 1 9 839 296 143 20 0 chr4 33358319 33358364 -122271756 + ID_B1 SINE B4 172 217 -7 9 839 217 231 0 0 chr4 33358388 33358427 -122271693 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 839 304 236 14 0 chr4 33358482 33358554 -122271566 - ID_B1 SINE B4 -20 204 132 9 839 613 174 26 0 chr4 33358707 33358822 -122271298 - B1F SINE Alu -9 140 23 9 839 221 276 24 73 chr4 33359109 33359191 -122270929 - B1F2 SINE Alu -71 78 1 9 839 855 180 72 34 chr4 33359593 33359655 -122270465 + B3 SINE B2 2 61 -155 9 839 2330 167 85 20 chr4 33359655 33360150 -122269970 + RLTR11A2 LTR ERVK 1 527 0 9 839 855 180 72 34 chr4 33360150 33360294 -122269826 + B3 SINE B2 62 215 -1 9 839 1311 278 99 20 chr4 33360299 33360768 -122269352 + Lx7 LINE L1 5244 5744 -136 9 839 423 0 0 0 chr4 33360768 33360815 -122269305 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 9 839 1311 278 99 20 chr4 33360815 33360836 -122269284 + Lx7 LINE L1 5745 5762 -118 9 839 915 203 54 34 chr4 33360836 33361040 -122269080 + B3 SINE B2 3 210 -6 9 839 1311 283 85 17 chr4 33361040 33361153 -122268967 + Lx7 LINE L1 5763 5896 -1800 9 839 393 22 0 0 chr4 33361153 33361199 -122268921 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 839 447 19 0 0 chr4 33361199 33361250 -122268870 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 839 404 276 16 16 chr4 33361540 33361669 -122268451 + ID_B1 SINE B4 82 210 -14 9 839 561 120 8 33 chr4 33361727 33361848 -122268272 + (TAGA)n Simple_repeat Simple_repeat 1 118 0 9 839 428 212 12 0 chr4 33361854 33361934 -122268186 + ID_B1 SINE B4 91 171 -53 9 839 424 255 39 0 chr4 33361934 33361956 -122268164 + PB1D10 SINE Alu 10 115 -2 9 839 441 205 0 35 chr4 33362680 33362796 -122267324 - B3A SINE B2 -85 113 2 9 839 392 302 9 0 chr4 33362872 33362978 -122267142 - B1_Mur1 SINE Alu 0 149 43 9 839 676 239 14 0 chr4 33363004 33363142 -122266978 - B1_Mur1 SINE Alu -7 142 3 9 839 25 0 0 0 chr4 33363154 33363179 -122266941 + AT_rich Low_complexity Low_complexity 1 25 0 9 839 347 202 69 92 chr4 33363179 33363266 -122266854 - RSINE1 SINE B4 0 165 81 9 839 1023 162 44 29 chr4 33363269 33363473 -122266647 + URR1B DNA MER1_type 1 207 -18 9 839 1106 208 34 0 chr4 33363573 33363780 -122266340 - B3 SINE B2 -1 215 2 9 839 1922 153 28 71 chr4 33363863 33364086 -122266034 - ORR1C1 LTR MaLR 0 378 183 9 839 2620 80 142 104 chr4 33364086 33364586 -122265534 + MURVY-LTR LTR ERV1 1 519 0 9 839 1922 153 28 71 chr4 33364586 33364756 -122265364 - ORR1C1 LTR MaLR -196 182 2 9 839 369 0 0 0 chr4 33364774 33364815 -122265305 + (T)n Simple_repeat Simple_repeat 1 41 0 9 839 1023 263 55 26 chr4 33364903 33365250 -122264870 + RCHARR1 DNA MER1_type 143 499 -475 9 839 1283 92 27 21 chr4 33365774 33365962 -122264158 + B2_Mm2 SINE B2 1 189 -6 9 839 555 189 112 15 chr4 33366042 33366176 -122263944 - B1_Mur1 SINE Alu -2 147 1 9 839 527 215 140 34 chr4 33366184 33366362 -122263758 - B3A SINE B2 -1 197 1 9 839 1225 55 0 0 chr4 33366582 33366728 -122263392 - B1_Mus1 SINE Alu 0 148 3 9 839 1350 67 0 0 chr4 33366728 33366906 -122263214 + (TC)n Simple_repeat Simple_repeat 2 179 0 9 839 1518 62 16 0 chr4 33366948 33367140 -122262980 - B2_Mm2 SINE B2 0 195 1 9 839 295 78 39 0 chr4 33367382 33367433 -122262687 + (GGA)n Simple_repeat Simple_repeat 2 54 0 9 839 634 193 59 0 chr4 33367435 33367570 -122262550 + RCHARR1 DNA MER1_type 532 674 -300 9 839 592 215 7 44 chr4 33368118 33368254 -122261866 - B1F2 SINE Alu -7 142 12 9 839 4488 107 51 9 chr4 33368502 33369152 -122260968 + RLTR33 LTR ERVK 2 678 0 9 839 508 242 72 0 chr4 33369223 33369348 -122260772 - ID_B1 SINE B4 -10 214 85 9 839 273 299 75 58 chr4 33369554 33369742 -122260378 - L2b LINE L2 -206 3169 2979 9 839 24 53 0 0 chr4 33369801 33369839 -122260281 + AT_rich Low_complexity Low_complexity 1 38 0 9 839 296 308 103 22 chr4 33369935 33370071 -122260049 + B1F2 SINE Alu 2 148 -1 9 839 335 260 92 46 chr4 33370194 33370303 -122259817 - PB1D9 SINE Alu -6 114 1 9 839 375 296 32 90 chr4 33370303 33370394 -122259726 - ID SINE ID -143 81 2 9 839 381 250 0 65 chr4 33370410 33370534 -122259586 - PB1D10 SINE Alu 0 117 2 9 839 347 300 12 68 chr4 33370743 33370904 -122259216 - RMER10B LTR ERVL 0 398 247 9 839 297 294 8 84 chr4 33371164 33371283 -122258837 + PB1D10 SINE Alu 1 110 -7 9 839 351 244 0 23 chr4 33371464 33371552 -122258568 + ID_B1 SINE B4 85 170 -54 9 839 1635 42 0 0 chr4 33372026 33372217 -122257903 + B2_Mm1a SINE B2 2 192 -1 9 839 796 219 23 45 chr4 33372317 33372537 -122257583 - ID_B1 SINE B4 -6 218 4 9 839 367 259 103 8 chr4 33373027 33373144 -122256976 - ID_B1 SINE B4 -13 211 84 9 839 339 262 79 0 chr4 33373232 33373358 -122256762 - ID_B1 SINE B4 -87 137 2 9 839 826 234 68 0 chr4 33373521 33373713 -122256407 - ID_B1 SINE B4 -18 206 2 9 839 880 234 24 5 chr4 33373859 33374065 -122256055 + B3 SINE B2 2 211 -5 9 839 445 235 220 16 chr4 33374104 33374286 -122255834 + ID_B1 SINE B4 6 224 0 9 839 1298 223 65 23 chr4 33374307 33374615 -122255505 + Lx9 LINE L1 6951 7271 -373 9 839 896 181 320 36 chr4 33374790 33375065 -122255055 - RMER2 LTR ERV1 -214 353 1 9 839 1392 183 126 6 chr4 33375068 33375393 -122254727 + Lx9 LINE L1 7275 7638 -6 9 839 270 186 0 0 chr4 33375482 33375568 -122254552 + GA-rich Low_complexity Low_complexity 1 86 0 9 839 499 306 27 14 chr4 33375583 33375729 -122254391 - RSINE1 SINE B4 -17 148 1 9 839 240 263 153 31 chr4 33375735 33375833 -122254287 - PB1D10 SINE Alu -7 110 1 9 839 436 294 58 7 chr4 33377685 33377822 -122252298 + ID_B1 SINE B4 81 224 0 9 839 746 158 19 1 chr4 33378015 33378160 -122251960 + B2_Mm2 SINE B2 2 159 -57 9 839 477 0 0 0 chr4 33378192 33378245 -122251875 + (GA)n Simple_repeat Simple_repeat 1 53 0 9 839 220 216 39 0 chr4 33378251 33378302 -122251818 + PB1D10 SINE Alu 38 90 -27 9 839 373 242 0 59 chr4 33378259 33378360 -122251760 + ID_B1 SINE B4 129 223 -1 9 839 367 224 41 0 chr4 33378362 33378460 -122251660 + MER5A1 DNA MER1_type 62 163 -3 9 839 282 333 23 0 chr4 33378518 33378605 -122251515 - PB1D10 SINE Alu -27 90 2 9 839 639 293 14 50 chr4 33378741 33378960 -122251160 + ID_B1 SINE B4 9 219 -5 9 839 224 246 0 109 chr4 33379035 33379085 -122251035 + B1F2 SINE Alu 1 45 -104 9 839 887 122 0 11 chr4 33379085 33379267 -122250853 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 839 224 246 0 109 chr4 33379267 33379280 -122250840 + B1F2 SINE Alu 46 57 -92 9 839 342 127 0 0 chr4 33379281 33379352 -122250768 + (GGA)n Simple_repeat Simple_repeat 3 73 0 9 839 420 260 133 20 chr4 33380101 33380297 -122249823 + ID_B1 SINE B4 3 220 -4 9 839 1319 108 27 0 chr4 33380326 33380512 -122249608 - B2_Mm2 SINE B2 -4 191 1 9 839 956 83 60 0 chr4 33380625 33380758 -122249362 - B1_Mus2 SINE Alu -6 141 1 9 839 326 247 32 53 chr4 33380806 33380900 -122249220 - B3A SINE B2 -105 93 2 9 839 213 333 57 11 chr4 33381102 33381190 -122248930 + B1F SINE Alu 23 114 -35 9 839 243 0 0 0 chr4 33381205 33381232 -122248888 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 839 588 281 0 7 chr4 33381245 33381392 -122248728 + B1_Mur1 SINE Alu 1 146 -3 9 839 273 196 18 0 chr4 33381412 33381468 -122248652 - ORR1B2 LTR MaLR 0 367 311 9 839 1223 54 0 0 chr4 33381507 33381654 -122248466 - B1_Mus2 SINE Alu 0 147 1 9 839 553 181 207 0 chr4 33381664 33381780 -122248340 - B1_Mus1 SINE Alu -8 140 1 9 839 1219 67 81 27 chr4 33381792 33381977 -122248143 - B2_Mm2 SINE B2 0 195 1 9 839 1481 171 57 0 chr4 33381986 33382267 -122247853 - ORR1B2 LTR MaLR -52 315 19 9 839 1717 220 67 11 chr4 33382392 33382843 -122247277 + RMER20A LTR ERVK 11 486 -30 9 839 225 0 0 0 chr4 33383182 33383207 -122246913 + (T)n Simple_repeat Simple_repeat 1 25 0 9 839 402 273 78 20 chr4 33383807 33383960 -122246160 + RMER5 LTR ERV1 58 219 -315 9 839 1053 246 135 24 chr4 33384011 33384352 -122245768 + MTE2a LTR MaLR 1 379 0 9 839 1088 155 4 64 chr4 33384390 33384580 -122245540 - RLTR9A LTR ERVK 0 368 185 9 839 198 0 0 0 chr4 33384580 33384602 -122245518 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 839 1088 155 4 64 chr4 33384602 33384646 -122245474 - RLTR9A LTR ERVK -184 184 148 9 839 14381 59 33 11 chr4 33384647 33385780 -122244340 - RLTR45-int LTR ERVK -3648 3596 2434 9 839 282 29 0 0 chr4 33385780 33385815 -122244305 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 839 14381 100 54 20 chr4 33385815 33387258 -122242862 - RLTR45-int LTR ERVK -4811 2433 187 9 839 1130 122 22 27 chr4 33387421 33387606 -122242514 - RLTR45-int LTR ERVK -5622 186 3 9 839 2314 204 106 61 chr4 33387608 33388462 -122241658 - RLTR13D6 LTR ERVK 0 929 1 9 839 620 306 81 5 chr4 33388462 33388647 -122241473 + MTE2a-int LTR MaLR 1106 1305 -275 9 839 1565 164 88 3 chr4 33388649 33388955 -122241165 + IAPEY3_LTR LTR ERVK 1 332 0 9 839 906 242 89 12 chr4 33388955 33389211 -122240909 + MTE2a-int LTR MaLR 1305 1580 0 9 839 1273 245 105 26 chr4 33389211 33389555 -122240565 + MTE2a LTR MaLR 1 371 -8 9 839 320 137 20 0 chr4 33389641 33389692 -122240428 - RLTR28 LTR ERVL -4 520 469 9 839 1306 234 34 42 chr4 33390008 33390387 -122239733 + RMER1B Other Other 31 406 -660 9 839 2264 131 3 32 chr4 33390402 33390484 -122239636 - RLTR15 LTR ERVK 0 359 284 9 839 2060 99 75 7 chr4 33390484 33390789 -122239331 - ORR1A3 LTR MaLR 0 326 1 1 839 2264 131 3 32 chr4 33390789 33391076 -122239044 - RLTR15 LTR ERVK -76 283 1 9 839 3675 180 67 51 chr4 33391168 33391779 -122238341 - MYSERV6-int LTR ERVK -84 8875 8220 1 839 1592 47 0 0 chr4 33391779 33391971 -122238149 + B2_Mm1t SINE B2 2 193 0 1 839 3675 180 67 51 chr4 33391971 33392302 -122237818 - MYSERV6-int LTR ERVK -740 8219 7919 1 839 198 0 0 0 chr4 33392302 33392324 -122237796 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 839 3675 192 56 58 chr4 33392324 33392571 -122237549 - MYSERV6-int LTR ERVK -1041 7918 7813 1 839 276 264 43 60 chr4 33392578 33392695 -122237425 - RMER4A LTR ERVK -44 422 308 1 839 232 365 0 0 chr4 33392745 33392860 -122237260 + RMER1B Other Other 422 536 -530 1 839 591 296 134 17 chr4 33392845 33393084 -122237036 + RMER1B Other Other 209 536 -530 1 839 637 139 29 23 chr4 33393084 33393232 -122236888 - RLTR25B LTR ERVK 0 1103 898 1 839 2825 167 94 0 chr4 33393238 33393789 -122236331 + RMER1A Other Other 423 1025 -5 1 839 649 257 15 0 chr4 33393797 33393933 -122236187 - B1_Mur1 SINE Alu -5 144 7 1 839 24 0 0 0 chr4 33393935 33393959 -122236161 + AT_rich Low_complexity Low_complexity 1 24 0 1 839 244 318 16 0 chr4 33394012 33394075 -122236045 - RSINE1 SINE B4 -21 144 81 1 839 541 259 44 19 chr4 33394220 33394425 -122235695 + MTEb LTR MaLR 19 196 -183 1 839 929 259 41 11 chr4 33394608 33394877 -122235243 - RMER15 LTR ERVL 0 575 299 1 839 363 236 257 28 chr4 33395502 33395681 -122234439 - MTD LTR MaLR -12 407 188 1 839 517 239 110 66 chr4 33395661 33395752 -122234368 - CYRA11_Mm Unknown Y-chromosome -208 409 172 1 839 893 88 22 7 chr4 33395752 33395889 -122234231 + URR1B DNA MER1_type 86 224 -1 1 839 1662 157 92 9 chr4 33395933 33396147 -122233973 - ORR1B1 LTR MaLR 0 394 156 1 839 192 125 0 0 chr4 33396147 33396179 -122233941 + (CGTG)n Simple_repeat Simple_repeat 4 35 0 1 839 336 48 0 0 chr4 33396179 33396220 -122233900 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 839 1662 213 96 79 chr4 33396220 33396428 -122233692 - ORR1B1 LTR MaLR -196 223 21 1 839 1225 48 0 0 chr4 33396533 33396680 -122233440 + B1_Mm SINE Alu 1 147 0 1 839 252 0 0 0 chr4 33396680 33396708 -122233412 + (A)n Simple_repeat Simple_repeat 1 28 0 1 839 267 133 0 0 chr4 33398392 33398437 -122231683 + (T)n Simple_repeat Simple_repeat 1 45 0 1 839 1156 28 20 14 chr4 33398438 33398584 -122231536 - B1_Mm SINE Alu 0 147 1 1 839 375 273 31 55 chr4 33399104 33399232 -122230888 + B3 SINE B2 77 201 -15 1 839 284 276 55 44 chr4 33399554 33399645 -122230475 - ID_B1 SINE B4 -35 189 98 1 839 551 184 112 0 chr4 33399762 33399887 -122230233 + B1_Mur1 SINE Alu 2 140 -9 1 839 300 239 172 11 chr4 33400158 33400251 -122229869 + PB1D10 SINE Alu 1 108 -9 1 839 380 260 200 0 chr4 33400270 33400370 -122229750 + PB1D9 SINE Alu 1 120 0 1 839 21 0 0 0 chr4 33400438 33400459 -122229661 + AT_rich Low_complexity Low_complexity 1 21 0 1 839 260 315 55 0 chr4 33400585 33400658 -122229462 - ID4_ SINE ID -4 79 3 1 839 228 111 0 0 chr4 33400668 33400704 -122229416 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 839 563 304 104 35 chr4 33400759 33400960 -122229160 - B4A SINE B4 -75 217 3 1 839 324 0 0 0 chr4 33401042 33401078 -122229042 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1 839 1086 71 14 0 chr4 33401078 33401218 -122228902 - B1_Mm SINE Alu -1 146 5 1 839 22 0 0 0 chr4 33401234 33401256 -122228864 + AT_rich Low_complexity Low_complexity 1 22 0 1 839 207 0 0 0 chr4 33401368 33401391 -122228729 + (T)n Simple_repeat Simple_repeat 1 23 0 1 839 1285 14 0 0 chr4 33401391 33401538 -122228582 - B1_Mm SINE Alu 0 147 1 1 839 278 292 0 0 chr4 33401604 33401669 -122228451 - B3A SINE B2 -130 68 4 1 839 566 221 148 0 chr4 33401684 33401806 -122228314 - B1_Mur2 SINE Alu -9 140 1 1 839 263 43 64 0 chr4 33401821 33401868 -122228252 - B2_Mm2 SINE B2 -7 188 139 1 839 413 296 0 0 chr4 33402217 33402315 -122227805 + PB1D10 SINE Alu 20 117 0 1 839 616 252 0 0 chr4 33402657 33402796 -122227324 - B1_Mur1 SINE Alu -8 141 3 1 839 217 300 0 0 chr4 33402797 33402847 -122227273 + ID4 SINE ID 2 51 -32 1 839 198 103 0 0 chr4 33402855 33402884 -122227236 + (A)n Simple_repeat Simple_repeat 1 29 0 1 839 877 231 23 0 chr4 33403298 33403471 -122226649 + B3 SINE B2 34 210 -6 1 839 563 261 43 31 chr4 33403848 33404010 -122226110 + RSINE1 SINE B4 2 165 0 1 839 654 143 0 18 chr4 33404285 33404399 -122225721 + Lx5 LINE L1 6472 6583 -467 1 839 788 49 195 0 chr4 33404437 33404560 -122225560 + B1_Mus2 SINE Alu 1 147 0 1 839 244 346 20 10 chr4 33404702 33404804 -122225316 - PB1D10 SINE Alu -13 104 2 1 839 272 287 0 54 chr4 33404808 33404900 -122225220 - L2 LINE L2 -1338 2081 1995 1 839 768 231 70 5 chr4 33405100 33405300 -122224820 + B3 SINE B2 4 216 0 1 839 321 180 217 57 chr4 33405328 33405434 -122224686 + PB1 SINE Alu 5 127 0 1 839 258 338 0 12 chr4 33405444 33405525 -122224595 + ID4_ SINE ID 2 81 -2 1 839 580 321 108 5 chr4 33406137 33406331 -122223789 + ID_B1 SINE B4 2 215 -9 1 839 229 300 20 0 chr4 33406419 33406469 -122223651 + AluF_3 SINE Alu 138 188 -123 1 839 625 200 8 39 chr4 33406483 33406613 -122223507 - RMER15 LTR ERVL -18 557 432 1 839 867 231 64 5 chr4 33406683 33406887 -122223233 - B3 SINE B2 0 216 1 1 839 523 264 125 16 chr4 33407077 33407189 -122222931 + ID_B1 SINE B4 1 119 -105 1 839 856 146 29 7 chr4 33407189 33407327 -122222793 - B1_Mus2 SINE Alu -5 142 2 1 839 523 264 125 16 chr4 33407327 33407406 -122222714 + ID_B1 SINE B4 120 213 -11 1 839 360 351 11 11 chr4 33407684 33407779 -122222341 - B4 SINE B4 -2 290 196 1 839 5104 232 85 28 chr4 33407780 33409491 -122220629 - Lx7 LINE L1 -1496 6200 4366 1 839 270 115 0 0 chr4 33409491 33409543 -122220577 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 839 5104 234 110 38 chr4 33409543 33409924 -122220196 - Lx7 LINE L1 -1512 4365 3973 1 839 569 154 47 86 chr4 33409931 33410059 -122220061 - B1_Mus1 SINE Alu 0 150 28 1 839 304 250 163 54 chr4 33409970 33410173 -122219947 - MT2B LTR ERVL -322 279 55 1 839 22 0 0 0 chr4 33410361 33410383 -122219737 + AT_rich Low_complexity Low_complexity 1 22 0 1 839 477 254 18 0 chr4 33410388 33410502 -122219618 - ID_B1 SINE B4 -5 219 104 1 839 1432 186 11 11 chr4 33410643 33410915 -122219205 - B4A SINE B4 -17 275 4 1 839 792 148 8 0 chr4 33410969 33411091 -122219029 - B1_Mur3 SINE Alu -26 123 1 1 839 372 262 7 93 chr4 33411091 33411117 -122219003 - MT2B LTR ERVL -450 151 138 1 839 1100 75 131 6 chr4 33411207 33411367 -122218753 - B2_Mm2 SINE B2 -14 181 2 1 839 713 260 68 0 chr4 33412381 33412573 -122217547 - B4A SINE B4 -84 208 4 1 839 1219 41 7 0 chr4 33413030 33413177 -122216943 - B1_Mus1 SINE Alu 0 148 1 1 839 1171 41 0 40 chr4 33413504 33413656 -122216464 + B1_Mus2 SINE Alu 2 147 0 1 839 189 0 0 0 chr4 33413656 33413677 -122216443 + (A)n Simple_repeat Simple_repeat 1 21 0 1 839 407 240 215 0 chr4 33413815 33413936 -122216184 + B1_Mur1 SINE Alu 3 149 0 1 839 394 258 54 0 chr4 33414360 33414453 -122215667 - PB1D10 SINE Alu -7 110 13 1 839 248 322 208 20 chr4 33414453 33414509 -122215611 - ID_B1 SINE B4 -7 217 41 1 839 698 297 7 0 chr4 33414519 33414674 -122215446 - RSINE1 SINE B4 -2 163 8 1 839 272 355 9 9 chr4 33414684 33414792 -122215328 - PB1D10 SINE Alu -9 108 1 1 839 206 280 0 0 chr4 33415010 33415060 -122215060 + CT-rich Low_complexity Low_complexity 4 53 0 1 839 556 198 119 0 chr4 33415060 33415186 -122214934 - ID_B1 SINE B4 0 224 84 1 839 34 0 0 0 chr4 33415222 33415256 -122214864 + AT_rich Low_complexity Low_complexity 1 34 0 1 839 1798 134 75 15 chr4 33415387 33415719 -122214401 - ORR1B2 LTR MaLR -15 352 1 1 839 690 265 100 39 chr4 33416060 33416339 -122213781 - RLTR9A LTR ERVK 0 368 73 1 839 1106 57 35 0 chr4 33417372 33417513 -122212607 + B1_Mus2 SINE Alu 2 147 0 1 839 612 0 0 0 chr4 33418105 33418173 -122211947 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 1 839 632 265 25 38 chr4 33418194 33418351 -122211769 - RSINE1 SINE B4 -9 156 2 1 839 2074 100 26 59 chr4 33418405 33418744 -122211376 - ORR1A4 LTR MaLR -1 328 1 1 839 213 211 0 0 chr4 33418766 33418818 -122211302 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 1 839 404 295 63 32 chr4 33418889 33419015 -122211105 - PB1D10 SINE Alu -19 130 1 1 839 461 239 77 0 chr4 33419101 33419218 -122210902 - RSINE1 SINE B4 -37 128 3 1 839 310 252 248 17 chr4 33419528 33419645 -122210475 + ID_B1 SINE B4 29 172 -52 1 839 272 268 73 0 chr4 33419780 33419862 -122210258 + B4A SINE B4 5 92 -200 1 839 721 287 38 22 chr4 33419895 33420080 -122210040 + B3A SINE B2 1 188 -10 1 839 281 348 101 29 chr4 33420076 33420215 -122209905 + B4A SINE B4 84 232 -60 1 839 791 293 129 0 chr4 33420215 33420471 -122209649 + B4A SINE B4 4 292 0 1 839 344 149 45 0 chr4 33420653 33420720 -122209400 + HAL1-3A_ME LINE L1 1943 2012 -846 1 839 180 152 0 0 chr4 33420760 33420793 -122209327 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 839 551 197 81 50 chr4 33420869 33421029 -122209091 - RSINE1 SINE B4 0 165 1 1 839 31 26 0 0 chr4 33421151 33421189 -122208931 + AT_rich Low_complexity Low_complexity 1 38 0 1 104 4654 206 73 41 chr4 33421393 33423524 -122206596 + Lx5 LINE L1 4813 7012 -38 1 840 609 239 60 0 chr4 33423766 33423900 -122206220 - B1F SINE Alu -4 145 4 1 840 225 29 0 0 chr4 33423929 33423963 -122206157 - B3 SINE B2 -6 210 177 1 840 918 219 10 38 chr4 33423963 33424172 -122205948 - B3 SINE B2 -13 203 1 1 840 534 31 0 0 chr4 33424190 33424254 -122205866 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1 840 354 310 8 81 chr4 33424513 33424636 -122205484 - PB1D10 SINE Alu -1 116 3 1 840 389 301 53 27 chr4 33425405 33425555 -122204565 - B4A SINE B4 -137 155 2 1 840 621 206 0 9 chr4 33425680 33425788 -122204332 - B1_Mus2 SINE Alu -40 107 1 1 840 263 263 111 0 chr4 33426319 33426418 -122203702 - PB1D7 SINE Alu -7 113 4 1 840 942 67 0 36 chr4 33426504 33426643 -122203477 - B2_Mm2 SINE B2 -23 172 39 1 840 21 0 0 0 chr4 33426768 33426789 -122203331 + AT_rich Low_complexity Low_complexity 1 21 0 1 840 182 229 62 0 chr4 33427051 33427099 -122203021 + L2b LINE L2 3321 3371 -4 1 840 256 221 101 14 chr4 33427828 33427897 -122202223 - ID4_ SINE ID -7 76 2 1 840 225 0 0 0 chr4 33427913 33427938 -122202182 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 840 460 326 21 0 chr4 33427988 33428132 -122201988 - RSINE1 SINE B4 -17 148 2 1 840 505 257 57 68 chr4 33428201 33428393 -122201727 - B3A SINE B2 -7 191 2 1 840 25 31 0 0 chr4 33428403 33428435 -122201685 + AT_rich Low_complexity Low_complexity 1 32 0 1 840 324 83 0 0 chr4 33428435 33428483 -122201637 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 840 621 279 117 0 chr4 33428485 33428639 -122201481 - B3A SINE B2 -26 172 1 1 840 195 42 0 0 chr4 33428668 33428692 -122201428 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1 840 327 299 175 0 chr4 33428720 33428817 -122201303 - B1F2 SINE Alu -35 114 1 1 840 627 214 46 28 chr4 33428888 33429070 -122201050 - B3 SINE B2 -7 188 16 1 840 288 0 0 0 chr4 33429084 33429116 -122201004 + (ACCG)n Simple_repeat Simple_repeat 2 33 0 1 840 1410 82 0 5 chr4 33429135 33429331 -122200789 - B2_Mm2 SINE B2 0 195 1 1 840 1117 81 0 0 chr4 33429344 33429492 -122200628 - B1_Mus1 SINE Alu 0 148 1 1 840 24 0 0 0 chr4 33429492 33429516 -122200604 + AT_rich Low_complexity Low_complexity 1 24 0 1 840 297 346 0 0 chr4 33430222 33430303 -122199817 - MLT1F LTR MaLR -101 447 367 1 840 299 309 21 0 chr4 33431068 33431162 -122198958 + ID_B1 SINE B4 98 193 -31 1 840 335 297 33 11 chr4 33431580 33431672 -122198448 + B1F1 SINE Alu 35 128 -21 1 840 866 99 8 0 chr4 33431682 33431813 -122198307 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 1 840 504 275 88 18 chr4 33432719 33432889 -122197231 - B3A SINE B2 -15 183 2 1 840 766 317 37 15 chr4 33432938 33433262 -122196858 + MER95 LTR ERV 1 331 -100 1 840 383 141 149 21 chr4 33433380 33433474 -122196646 - PB1D7 SINE Alu -8 112 7 1 840 247 191 0 87 chr4 33433424 33433493 -122196627 - B4A SINE B4 -153 139 77 1 840 375 23 0 0 chr4 33434446 33434490 -122195630 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 840 297 0 0 0 chr4 33434490 33434522 -122195598 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 840 220 182 18 18 chr4 33434978 33435034 -122195086 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 840 259 264 13 65 chr4 33435186 33435263 -122194857 - MER5A1 DNA MER1_type -43 123 51 1 840 25 0 0 0 chr4 33435406 33435431 -122194689 + AT_rich Low_complexity Low_complexity 1 25 0 1 840 673 242 140 14 chr4 33435701 33436059 -122194061 + L1MB3 LINE L1 5687 6084 -99 1 840 521 198 18 26 chr4 33436101 33436215 -122193905 + PB1D10 SINE Alu 5 117 0 1 840 261 0 0 0 chr4 33436596 33436625 -122193495 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 840 781 246 172 15 chr4 33436672 33436870 -122193250 - B4 SINE B4 -63 229 1 1 840 700 214 0 8 chr4 33436900 33437032 -122193088 - B1_Mur1 SINE Alu -9 140 10 1 840 297 0 0 0 chr4 33437270 33437303 -122192817 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 840 297 0 0 0 chr4 33437303 33437335 -122192785 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 840 1435 100 78 4 chr4 33437420 33437661 -122192459 - L1_Mus4 LINE L1 0 6636 6389 1 840 291 51 0 0 chr4 33437661 33437689 -122192431 + (T)n Simple_repeat Simple_repeat 1 28 0 1 840 1216 80 10 74 chr4 33437805 33438007 -122192113 + B2_Mm2 SINE B2 1 189 -6 1 840 522 220 130 52 chr4 33438582 33438774 -122191346 + B4A SINE B4 39 245 -47 1 840 21 0 0 0 chr4 33439451 33439472 -122190648 + AT_rich Low_complexity Low_complexity 1 21 0 1 840 887 206 10 61 chr4 33440394 33440590 -122189530 + B2_Mm2 SINE B2 1 186 -9 1 840 304 288 0 0 chr4 33441672 33441745 -122188375 - ID4 SINE ID -9 74 2 1 840 249 74 88 53 chr4 33441948 33442005 -122188115 + B2_Mm2 SINE B2 130 188 -7 1 840 530 223 50 7 chr4 33441993 33442133 -122187987 - ORR1D1 LTR MaLR -228 146 1 1 840 233 246 18 0 chr4 33442153 33442210 -122187910 - B4A SINE B4 -234 58 1 1 840 263 295 58 65 chr4 33442216 33442354 -122187766 - RLTR25B LTR ERVK -446 582 446 1 840 573 214 77 0 chr4 33442267 33442384 -122187736 - B1_Mus1 SINE Alu -16 132 7 1 840 24 32 0 0 chr4 33443176 33443207 -122186913 + AT_rich Low_complexity Low_complexity 1 31 0 1 840 367 188 11 66 chr4 33443289 33443380 -122186740 + PB1D9 SINE Alu 34 119 -1 1 840 456 254 26 0 chr4 33443654 33443768 -122186352 + PB1D10 SINE Alu 1 117 0 1 840 291 280 26 13 chr4 33444296 33444372 -122185748 - B3 SINE B2 -93 123 47 1 840 455 289 41 21 chr4 33444446 33444591 -122185529 + RSINE1 SINE B4 8 155 -10 1 840 21 36 0 0 chr4 33444673 33444701 -122185419 + AT_rich Low_complexity Low_complexity 1 28 0 1 840 210 37 0 0 chr4 33444709 33444736 -122185384 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 1 840 1218 55 0 0 chr4 33444737 33444882 -122185238 - B1_Mus2 SINE Alu -2 145 1 1 840 223 384 0 18 chr4 33445552 33445719 -122184401 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 840 306 312 28 99 chr4 33445748 33445890 -122184230 - B3A SINE B2 -15 201 70 1 840 333 310 17 17 chr4 33446016 33446134 -122183986 - L1MEf LINE L1 -4934 1481 1364 1 840 297 206 63 0 chr4 33446221 33446284 -122183836 - PB1D9 SINE Alu -22 98 32 1 840 23 0 0 0 chr4 33446786 33446809 -122183311 + AT_rich Low_complexity Low_complexity 1 23 0 1 840 308 320 53 32 chr4 33447172 33447359 -122182761 - Lx8 LINE L1 -273 7200 7010 1 840 225 287 103 0 chr4 33447417 33447504 -122182616 - L1MEf LINE L1 -5729 671 576 1 840 220 404 18 27 chr4 33447528 33447560 -122182560 - PB1D10 SINE Alu -5 112 81 1 840 1259 176 137 33 chr4 33447560 33447895 -122182225 - ORR1D1 LTR MaLR 0 374 5 1 840 220 404 18 27 chr4 33447895 33447974 -122182146 - PB1D10 SINE Alu -37 80 2 1 840 322 367 93 5 chr4 33447977 33448193 -122181927 - L1MEf LINE L1 -5821 579 345 1 840 348 253 0 60 chr4 33448269 33448353 -122181767 - B1F2 SINE Alu -37 112 34 1 840 556 286 208 29 chr4 33448370 33448683 -122181437 - Lx8 LINE L1 -667 6806 6438 1 840 198 0 0 0 chr4 33448709 33448731 -122181389 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 840 375 292 74 8 chr4 33449009 33449130 -122180990 + ID_B1 SINE B4 1 129 -95 1 840 395 288 19 99 chr4 33449446 33449608 -122180512 + B1F1 SINE Alu 1 149 0 1 840 23 0 0 0 chr4 33449983 33450006 -122180114 + AT_rich Low_complexity Low_complexity 1 23 0 1 840 265 200 129 0 chr4 33450134 33450204 -122179916 + PB1D10 SINE Alu 39 117 0 1 840 696 223 179 22 chr4 33450517 33450696 -122179424 - B3 SINE B2 0 216 10 1 840 1168 119 21 11 chr4 33450762 33450949 -122179171 + B2_Mm2 SINE B2 2 190 -5 1 840 1520 184 118 15 chr4 33451115 33451278 -122178842 - ORR1C1 LTR MaLR 0 378 213 1 840 195 42 0 0 chr4 33451278 33451302 -122178818 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 840 480 18 0 0 chr4 33451302 33451358 -122178762 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 840 1520 184 118 15 chr4 33451358 33451525 -122178595 - ORR1C1 LTR MaLR -166 212 14 1 840 742 223 0 43 chr4 33451529 33451693 -122178427 - RMER10B LTR ERVL -48 350 194 1 840 1435 63 21 5 chr4 33451704 33451894 -122178226 - B2_Mm2 SINE B2 -2 193 1 1 840 439 344 32 0 chr4 33452019 33452176 -122177944 - RSINE1 SINE B4 -2 163 2 1 840 548 218 181 87 chr4 33452241 33452507 -122177613 - B4A SINE B4 0 292 2 1 840 22 0 0 0 chr4 33452987 33453009 -122177111 + AT_rich Low_complexity Low_complexity 1 22 0 1 840 277 276 0 0 chr4 33453824 33453900 -122176220 + B1_Mur3 SINE Alu 74 149 0 1 840 1173 56 0 0 chr4 33454151 33454294 -122175826 + B1_Mus1 SINE Alu 1 143 -5 1 840 342 20 0 0 chr4 33454294 33454344 -122175776 + B2_Mm1t SINE B2 141 190 -3 1 840 243 0 0 0 chr4 33455934 33455961 -122174159 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 840 1116 254 112 71 chr4 33455968 33456046 -122174074 - RLTR12B LTR ERVK -19 549 450 1 840 261 0 0 0 chr4 33456046 33456075 -122174045 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 840 1116 239 84 83 chr4 33456075 33456499 -122173621 - RLTR12B LTR ERVK -107 461 12 1 840 302 183 14 0 chr4 33456575 33456646 -122173474 + GA-rich Low_complexity Low_complexity 3 74 0 1 840 203 262 0 0 chr4 33456650 33456692 -122173428 + polypurine Low_complexity Low_complexity 3 44 0 1 840 1994 183 166 33 chr4 33456830 33457439 -122172681 - RMER6C LTR ERVK 0 690 1 1 840 3672 67 66 2 chr4 33457865 33458377 -122171743 - L1_Mus3 LINE L1 0 6638 6094 1 840 2029 78 30 0 chr4 33458377 33458672 -122171448 + L1_Mus3 LINE L1 5733 6036 -602 1 840 837 178 0 0 chr4 33458688 33458834 -122171286 - B1_Mus1 SINE Alu 0 148 3 1 840 4886 206 33 20 chr4 33458844 33460020 -122170100 - Lx9 LINE L1 -2 7642 6451 1 840 2837 62 70 0 chr4 33460151 33460521 -122169599 - MTA_Mm LTR MaLR 0 396 1 1 840 793 248 129 73 chr4 33461901 33462257 -122167863 - MTE2a LTR MaLR -2 377 2 1 840 238 206 27 27 chr4 33462923 33463033 -122167087 + (TATG)n Simple_repeat Simple_repeat 4 113 0 1 840 236 277 246 30 chr4 33463048 33463182 -122166938 - RSINE1 SINE B4 0 165 3 1 840 23 33 0 0 chr4 33463555 33463585 -122166535 + AT_rich Low_complexity Low_complexity 1 30 0 1 840 293 233 17 0 chr4 33463641 33463701 -122166419 - ID_B1 SINE B4 -25 199 139 1 840 266 286 163 11 chr4 33463700 33463792 -122166328 - B4A SINE B4 -173 119 14 1 840 321 286 20 20 chr4 33464187 33464287 -122165833 - PB1D10 SINE Alu -17 100 1 1 840 261 302 68 54 chr4 33464307 33464332 -122165788 - B4 SINE B4 -60 232 86 1 840 339 325 17 0 chr4 33464332 33464452 -122165668 - B1_Mus1 SINE Alu -26 122 1 1 840 2842 157 32 64 chr4 33464472 33465066 -122165054 - RMER15 LTR ERVL 0 575 1 1 840 328 259 9 18 chr4 33465740 33465850 -122164270 - L1MB3 LINE L1 -23 6160 6052 1 840 288 255 112 9 chr4 33465864 33465971 -122164149 + PB1D7 SINE Alu 1 118 -2 1 840 275 297 55 0 chr4 33466972 33467063 -122163057 + MER5A DNA MER1_type 94 189 0 1 840 257 328 34 25 chr4 33467536 33467655 -122162465 + ORR1E LTR MaLR 1 120 -239 1 840 1206 199 43 37 chr4 33467655 33468223 -122161897 - RLTR14-int LTR ERV1 -3048 2269 1781 1 840 1128 257 40 18 chr4 33468278 33468841 -122161279 - RLTR14-int LTR ERV1 -3805 1512 1286 1 840 446 250 43 0 chr4 33468922 33469038 -122161082 - RLTR14-int LTR ERV1 -4030 1287 1167 1 840 449 203 127 0 chr4 33469448 33469566 -122160554 - RLTR14-int LTR ERV1 -4157 1160 1028 1 840 334 304 17 0 chr4 33469850 33469965 -122160155 - MuLV-int LTR ERV1 -6231 1375 1259 1 840 488 212 88 9 chr4 33471404 33471518 -122158602 - RMER5 LTR ERV1 -407 127 5 1 840 276 100 0 0 chr4 33472284 33472324 -122157796 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 840 1400 89 16 0 chr4 33472726 33472916 -122157204 + B2_Mm2 SINE B2 2 194 -1 1 840 336 224 0 49 chr4 33473237 33473359 -122156761 - Lx7 LINE L1 -18 7678 7563 1 840 5470 193 29 19 chr4 33473413 33474568 -122155552 - Lx7 LINE L1 -335 7361 6196 1 840 710 144 63 0 chr4 33474570 33474681 -122155439 - ORR1B2 LTR MaLR -7 360 243 1 840 1120 82 7 0 chr4 33474902 33475049 -122155071 - B1_Mus1 SINE Alu 0 148 1 1 840 1279 57 73 11 chr4 33475100 33475277 -122154843 - B2_Mm2 SINE B2 -7 188 1 1 840 370 227 29 90 chr4 33475640 33475901 -122154219 - MYSERV6-int LTR ERVK -1639 7320 7213 1 840 746 187 75 0 chr4 33476428 33476562 -122153558 - B1_Mur4 SINE Alu -6 144 1 1 840 21 71 0 0 chr4 33477007 33477049 -122153071 + AT_rich Low_complexity Low_complexity 1 42 0 1 840 348 118 0 0 chr4 33477077 33477145 -122152975 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 840 439 237 3 119 chr4 33477145 33477176 -122152944 - ID_B1 SINE B4 -46 246 142 1 840 650 179 0 75 chr4 33477176 33477309 -122152811 - B1_Mur1 SINE Alu -14 135 13 1 840 439 237 3 119 chr4 33477309 33477325 -122152795 - ID_B1 SINE B4 -46 141 80 1 840 28 61 0 0 chr4 33477639 33477688 -122152432 + AT_rich Low_complexity Low_complexity 1 49 0 1 840 195 129 0 0 chr4 33478206 33478237 -122151883 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 840 483 175 39 10 chr4 33478608 33478712 -122151408 - PB1D9 SINE Alu -9 111 5 1 840 591 214 0 17 chr4 33479176 33479295 -122150825 - B1_Mur1 SINE Alu -1 148 32 1 840 281 260 86 48 chr4 33479216 33479321 -122150799 - MT2B LTR ERVL -338 263 155 1 840 728 257 48 5 chr4 33479330 33479537 -122150583 - B3 SINE B2 0 216 1 1 840 838 207 89 25 chr4 33480496 33480699 -122149421 - B3 SINE B2 0 216 1 1 840 1258 34 0 0 chr4 33481005 33481152 -122148968 - B1_Mm SINE Alu 0 147 1 1 840 4182 72 5 4 chr4 33481223 33481778 -122148342 + L1_Mus1 LINE L1 6012 6567 0 1 840 189 147 0 0 chr4 33481785 33481819 -122148301 + (A)n Simple_repeat Simple_repeat 1 34 0 1 840 317 297 119 89 chr4 33482178 33482481 -122147639 - L1M2 LINE L1 -787 5356 5045 1 840 213 0 53 26 chr4 33483864 33483902 -122146218 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 840 537 15 0 15 chr4 33483902 33483964 -122146156 - B1_Mus2 SINE Alu -8 139 78 1 840 7280 53 18 0 chr4 33484144 33485657 -122144463 - L1Md_F3 LINE L1 -14 6570 5031 1 840 1038 74 7 0 chr4 33485870 33486005 -122144115 + B1_Mus2 SINE Alu 1 136 -11 1 840 287 0 53 0 chr4 33486007 33486045 -122144075 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 840 21 82 0 0 chr4 33486663 33486712 -122143408 + AT_rich Low_complexity Low_complexity 1 49 0 1 840 351 294 19 19 chr4 33487206 33487310 -122142810 + PB1D10 SINE Alu 11 114 -3 1 840 432 0 0 0 chr4 33487422 33487470 -122142650 + (GGAAA)n Simple_repeat Simple_repeat 2 49 0 1 840 342 279 47 0 chr4 33487516 33487602 -122142518 + B1F SINE Alu 23 112 -37 1 840 266 321 45 0 chr4 33487602 33487628 -122142492 + ID_B1 SINE B4 104 220 -4 1 840 454 306 178 39 chr4 33487767 33487947 -122142173 + B4A SINE B4 88 292 0 1 840 235 219 0 0 chr4 33487960 33488024 -122142096 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 840 279 0 0 0 chr4 33488157 33488188 -122141932 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 840 236 280 20 0 chr4 33488258 33488308 -122141812 + RSINE1 SINE B4 61 111 -54 1 840 544 275 126 31 chr4 33488319 33488612 -122141508 - RMER10A LTR ERVL -26 416 96 1 840 288 177 97 0 chr4 33489341 33489403 -122140717 - RLTR42-int LTR ERVK -3918 1604 1537 1 840 336 126 90 22 chr4 33489610 33489699 -122140421 + Lx LINE L1 6560 6654 0 1 840 519 257 83 79 chr4 33490633 33490899 -122139221 - RMER10A LTR ERVL -25 417 151 1 840 249 345 62 26 chr4 33491258 33491371 -122138749 - PB1D10 SINE Alu 0 117 1 1 840 21 0 0 0 chr4 33491907 33491928 -122138192 + AT_rich Low_complexity Low_complexity 1 21 0 1 840 193 261 171 14 chr4 33492362 33492432 -122137688 + MIR SINE MIR 155 235 -27 1 840 778 253 199 27 chr4 33492645 33492942 -122137178 - ORR1D2 LTR MaLR 0 370 23 1 840 442 307 75 32 chr4 33493012 33493291 -122136829 + L1M4 LINE L1 5480 5770 -408 1 840 540 301 49 5 chr4 33493736 33493960 -122136160 - ERVL-E-int LTR ERVL -3414 2253 2020 1 840 419 296 136 31 chr4 33494052 33494443 -122135677 - L1MA6 LINE L1 -51 6249 5818 1 840 21 0 0 0 chr4 33494662 33494683 -122135437 + AT_rich Low_complexity Low_complexity 1 21 0 1 840 805 236 66 55 chr4 33494753 33495027 -122135093 + Lx8 LINE L1 6973 7249 -224 1 840 23 0 0 0 chr4 33495050 33495073 -122135047 + AT_rich Low_complexity Low_complexity 1 23 0 1 840 3900 59 16 6 chr4 33495423 33495935 -122134185 - L1Md_F2 LINE L1 -2 6580 6064 1 840 740 219 62 78 chr4 33496550 33496743 -122133377 - B3A SINE B2 -1 197 8 1 840 367 274 29 92 chr4 33496772 33496945 -122133175 - RSINE1 SINE B4 -2 163 2 1 840 1636 195 54 3 chr4 33497575 33497929 -122132191 + ORR1D1 LTR MaLR 3 374 0 1 840 1028 253 72 7 chr4 33497930 33498209 -122131911 - RMER5 LTR ERV1 0 534 238 1 840 428 292 32 81 chr4 33498504 33498690 -122131430 - B3A SINE B2 0 198 22 1 840 574 221 131 0 chr4 33498722 33498844 -122131276 - B1_Mur1 SINE Alu -9 140 3 1 840 911 299 54 39 chr4 33499235 33499514 -122130606 - B4 SINE B4 0 292 10 1 840 373 282 0 107 chr4 33500635 33500766 -122129354 + RSINE1 SINE B4 1 117 -48 1 840 23 33 0 0 chr4 33502591 33502621 -122127499 + AT_rich Low_complexity Low_complexity 1 30 0 2 840 321 331 45 52 chr4 33503702 33503836 -122126284 - RSINE1 SINE B4 -29 136 4 3 840 538 331 38 0 chr4 33504053 33504213 -122125907 + B4 SINE B4 4 169 -123 4 840 308 304 55 42 chr4 33504396 33504561 -122125559 - MLT1-int LTR MaLR -702 669 503 5 840 1179 56 0 0 chr4 33504733 33504875 -122125245 - B1_Mus2 SINE Alu -5 142 1 6 840 365 145 13 0 chr4 33505009 33505085 -122125035 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 840 29 60 0 0 chr4 33505256 33505306 -122124814 + AT_rich Low_complexity Low_complexity 1 50 0 8 840 253 197 28 0 chr4 33505378 33505449 -122124671 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 9 840 369 0 0 0 chr4 33505449 33505490 -122124630 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 840 670 276 66 23 chr4 33505659 33505960 -122124160 - L1MA6 LINE L1 -34 6266 5953 1 840 1207 27 0 40 chr4 33505983 33506135 -122123985 + B1_Mm SINE Alu 2 147 0 1 840 26 0 0 0 chr4 33506181 33506207 -122123913 + AT_rich Low_complexity Low_complexity 1 26 0 1 840 275 346 9 27 chr4 33506229 33506339 -122123781 - RSINE1 SINE B4 -10 155 48 1 840 571 263 38 0 chr4 33506388 33506521 -122123599 - B1F SINE Alu -11 138 1 1 840 1425 263 37 19 chr4 33506523 33507062 -122123058 - L1MA6 LINE L1 -342 5958 5410 1 840 454 281 8 40 chr4 33507114 33507240 -122122880 - RSINE1 SINE B4 -41 124 3 1 840 230 192 77 0 chr4 33507246 33507324 -122122796 - L1MC LINE L1 -2797 3349 3266 1 840 201 39 0 0 chr4 33507517 33507543 -122122577 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 1 840 219 330 153 10 chr4 33507543 33507641 -122122479 - RSINE1 SINE B4 -11 154 43 1 840 198 0 0 0 chr4 33507650 33507672 -122122448 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2 840 531 252 47 0 chr4 33507672 33507799 -122122321 - B1_Mur3 SINE Alu -13 136 4 2 840 346 280 61 65 chr4 33507828 33507918 -122122202 - L1MCa LINE L1 -3809 2512 2423 2 840 648 214 34 14 chr4 33507918 33508065 -122122055 - B1_Mur4 SINE Alu 0 150 1 2 840 389 236 48 48 chr4 33508065 33508212 -122121908 - L1MCa LINE L1 -4086 2422 2276 2 840 331 284 201 52 chr4 33508233 33508367 -122121753 - RSINE1 SINE B4 -6 159 6 2 840 254 304 110 20 chr4 33508400 33508492 -122121628 - L1MCa LINE L1 -4282 2226 2127 2 840 2995 30 84 14 chr4 33508492 33508862 -122121258 + MTA_Mm LTR MaLR 1 396 0 2 840 254 304 110 20 chr4 33508862 33509024 -122121096 - L1MCa LINE L1 -4382 2126 1949 2 840 214 177 4 0 chr4 33509118 33509161 -122120959 - B2_Mm2 SINE B2 -163 53 10 2 840 242 53 79 0 chr4 33509188 33509226 -122120894 - L1MCa LINE L1 -4745 1763 1723 2 840 1031 72 65 0 chr4 33509257 33509395 -122120725 - B1_Mus1 SINE Alu 0 148 2 2 840 531 88 33 0 chr4 33509457 33509548 -122120572 + (GA)n Simple_repeat Simple_repeat 2 95 0 2 840 438 53 0 0 chr4 33509548 33509605 -122120515 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 3 840 758 270 161 32 chr4 33510063 33510409 -122119711 - MTD LTR MaLR -17 402 18 3 840 286 312 0 0 chr4 33511107 33511171 -122118949 + ID4 SINE ID 20 83 0 3 840 189 0 0 0 chr4 33511727 33511748 -122118372 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 840 838 199 0 7 chr4 33512038 33512185 -122117935 - B1_Mur3 SINE Alu -3 146 1 3 840 395 305 50 17 chr4 33512555 33512675 -122117445 - RSINE1 SINE B4 -12 153 30 3 840 22 0 0 0 chr4 33512777 33512799 -122117321 + AT_rich Low_complexity Low_complexity 1 22 0 3 840 6710 14 0 1 chr4 33513047 33513807 -122116313 - L1Md_A LINE L1 0 6582 5824 3 840 288 0 0 0 chr4 33514124 33514156 -122115964 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 840 397 267 36 22 chr4 33514751 33514889 -122115231 - B1_Mur3 SINE Alu -9 140 1 3 840 22 0 0 0 chr4 33514912 33514934 -122115186 + AT_rich Low_complexity Low_complexity 1 22 0 4 840 501 242 16 31 chr4 33515160 33515288 -122114832 - ID_B1 SINE B4 -13 211 86 4 840 352 310 60 0 chr4 33515319 33515419 -122114701 - PB1D7 SINE Alu -5 115 10 4 840 908 139 7 0 chr4 33515529 33515666 -122114454 + B1_Mus1 SINE Alu 2 139 -9 4 840 279 0 0 0 chr4 33515666 33515697 -122114423 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 840 291 257 200 0 chr4 33516098 33516203 -122113917 + ID_B1 SINE B4 65 190 -34 4 840 250 286 125 8 chr4 33516386 33516506 -122113614 + MIR SINE MIR 80 213 -49 4 840 192 77 0 0 chr4 33516615 33516641 -122113479 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 4 840 204 154 0 25 chr4 33516774 33516814 -122113306 + GA-rich Low_complexity Low_complexity 4 42 0 4 840 265 317 48 38 chr4 33517273 33517378 -122112742 - MIRb SINE MIR -62 206 101 4 840 334 254 172 48 chr4 33517701 33517846 -122112274 + MTE2b LTR MaLR 1 163 -216 5 840 628 221 52 0 chr4 33517944 33518080 -122112040 - B1_Mur1 SINE Alu 0 149 7 5 840 471 107 0 0 chr4 33518209 33518293 -122111827 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 840 334 257 0 0 chr4 33518293 33518363 -122111757 - PB1D9 SINE Alu -2 118 49 5 840 333 0 0 0 chr4 33518585 33518622 -122111498 + (CAA)n Simple_repeat Simple_repeat 2 38 0 5 840 217 179 26 0 chr4 33518900 33518939 -122111181 - B1_Mus1 SINE Alu -108 40 1 5 840 295 284 147 0 chr4 33519963 33520065 -122110055 + PB1D7 SINE Alu 1 117 -3 5 840 2288 120 77 0 chr4 33520283 33520649 -122109471 - ORR1B1 LTR MaLR 0 394 1 5 840 414 264 49 6 chr4 33520874 33521036 -122109084 - ID_B1 SINE B4 -12 212 1 5 840 964 84 69 46 chr4 33521127 33521302 -122108818 - Lx LINE L1 -9 6645 6467 5 840 8021 111 100 11 chr4 33521359 33523752 -122106368 + Lx3A LINE L1 4252 6970 -11 6 840 495 0 0 0 chr4 33523752 33523807 -122106313 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6 840 579 301 33 5 chr4 33524284 33524494 -122105626 - ID_B1 SINE B4 -8 216 1 6 840 360 146 0 0 chr4 33524574 33524629 -122105491 - B2_Mm2 SINE B2 -94 101 47 6 840 1320 58 35 0 chr4 33524660 33524833 -122105287 - B2_Mm1t SINE B2 -14 179 1 6 840 242 242 93 39 chr4 33524833 33524962 -122105158 - L1MC LINE L1 -505 5828 5693 6 840 868 219 7 0 chr4 33525155 33525301 -122104819 - B3 SINE B2 -68 148 2 6 840 339 250 15 0 chr4 33525341 33525409 -122104711 - B1F1 SINE Alu -80 69 1 6 840 4027 42 2 4 chr4 33525879 33526375 -122103745 - L1Md_F2 LINE L1 0 6582 6088 6 840 585 200 9 9 chr4 33526672 33526783 -122103337 + PB1D9 SINE Alu 1 111 -9 6 840 308 253 93 0 chr4 33528321 33528421 -122101699 + PB1D7 SINE Alu 13 120 0 7 840 428 281 21 0 chr4 33528424 33528520 -122101600 + B3 SINE B2 1 98 -118 7 840 1158 268 100 50 chr4 33528533 33529098 -122101022 - Lx6 LINE L1 -24 7436 6479 7 840 265 223 160 0 chr4 33529118 33529212 -122100908 - Lx6 LINE L1 -722 6328 6220 7 840 541 231 37 37 chr4 33529214 33529349 -122100771 + B3 SINE B2 68 202 -14 7 840 709 260 90 5 chr4 33529798 33529999 -122100121 - ID_B1 SINE B4 -6 218 1 7 840 333 0 0 0 chr4 33530078 33530115 -122100005 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 840 297 0 0 0 chr4 33530146 33530179 -122099941 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 840 195 69 0 0 chr4 33530182 33530211 -122099909 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 840 905 244 82 15 chr4 33530212 33530482 -122099638 - B4 SINE B4 0 292 5 7 840 26 30 0 0 chr4 33530530 33530563 -122099557 + AT_rich Low_complexity Low_complexity 1 33 0 7 840 6306 82 9 1 chr4 33531087 33531979 -122098141 - L1_Mus4 LINE L1 -2 6634 5736 7 840 218 270 14 100 chr4 33532106 33532176 -122097944 - ID4_ SINE ID 0 83 20 8 840 378 61 0 0 chr4 33532206 33532255 -122097865 + (T)n Simple_repeat Simple_repeat 1 49 0 8 840 1217 48 0 0 chr4 33532255 33532402 -122097718 - B1_Mus2 SINE Alu 0 147 1 8 840 554 294 67 100 chr4 33532447 33533218 -122096902 - L1M4 LINE L1 -1360 4786 4041 8 840 478 274 53 0 chr4 33533271 33533384 -122096736 + B3A SINE B2 44 162 -36 8 840 350 280 51 36 chr4 33533453 33533590 -122096530 + B4A SINE B4 1 139 -153 8 840 398 169 0 0 chr4 33534073 33534144 -122095976 - RLTR19-int LTR ERVK -2028 4109 4039 8 840 1088 221 9 86 chr4 33534290 33534627 -122095493 - RLTR19-int LTR ERVK -2174 3963 3653 8 840 180 0 0 0 chr4 33534633 33534653 -122095467 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 840 1119 63 6 36 chr4 33534654 33534819 -122095301 - B2_Mm2 SINE B2 -34 161 2 8 840 887 254 68 91 chr4 33534821 33535558 -122094562 - RLTR19-int LTR ERVK -2472 3665 2946 8 840 583 261 42 81 chr4 33535757 33536016 -122094104 - MYSERV6-int LTR ERVK -1455 7504 7256 8 840 896 201 38 67 chr4 33536082 33536397 -122093723 - RLTR19-int LTR ERVK -3371 2151 1846 8 840 1678 274 62 90 chr4 33536583 33537229 -122092891 - MTC-int LTR MaLR -43 1215 466 9 840 385 189 7 130 chr4 33537229 33537375 -122092745 - RLTR19-int LTR ERVK -4977 1160 1033 8 840 1074 37 81 0 chr4 33537595 33537731 -122092389 + B1_Mus2 SINE Alu 1 147 0 9 840 942 184 51 14 chr4 33537956 33538171 -122091949 - RLTR42-int LTR ERVK -4195 1327 1105 9 840 216 277 0 0 chr4 33540196 33540243 -122089877 + polypyrimidine Low_complexity Low_complexity 130 176 0 9 840 2142 85 7 3 chr4 33540686 33540992 -122089128 - L1Md_F3 LINE L1 -2 6582 6276 9 840 1029 88 15 0 chr4 33541241 33541377 -122088743 - B1_Mus1 SINE Alu -10 138 1 9 840 25 0 0 0 chr4 33541850 33541875 -122088245 + AT_rich Low_complexity Low_complexity 1 25 0 9 840 474 210 19 57 chr4 33541878 33541984 -122088136 - PB1D9 SINE Alu -6 114 13 9 840 414 274 0 86 chr4 33542367 33542495 -122087625 - PB1D10 SINE Alu 0 117 1 9 840 806 277 27 21 chr4 33542495 33542570 -122087550 - ID SINE ID -147 77 2 9 840 1974 260 36 34 chr4 33542840 33543424 -122086696 - Lx5 LINE L1 -36 7014 6455 1 840 783 59 0 0 chr4 33543424 33543525 -122086595 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 1 840 2960 235 49 47 chr4 33543525 33543899 -122086221 - Lx5 LINE L1 -727 6733 6142 1 840 1430 70 16 5 chr4 33543899 33544087 -122086033 + B2_Mm2 SINE B2 1 190 -5 1 840 3704 212 34 48 chr4 33544087 33544456 -122085664 - Lx5 LINE L1 -909 6141 5770 1 840 804 101 0 0 chr4 33544456 33544585 -122085535 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 1 840 3704 173 15 47 chr4 33544585 33545323 -122084797 - Lx5 LINE L1 -108 5769 5036 1 840 1079 156 97 18 chr4 33545314 33545542 -122084578 - Lx5 LINE L1 -3426 2451 2206 1 840 1336 97 16 5 chr4 33545563 33545750 -122084370 - B2_Mm2 SINE B2 -5 190 2 1 840 536 248 94 0 chr4 33546061 33546210 -122083910 + B3A SINE B2 1 163 -35 1 840 24 53 0 0 chr4 33546263 33546301 -122083819 + AT_rich Low_complexity Low_complexity 1 38 0 1 840 360 249 35 0 chr4 33546455 33546545 -122083575 + B1F SINE Alu 10 109 -11 1 840 325 281 147 17 chr4 33546839 33546955 -122083165 - RSINE1 SINE B4 -28 137 7 1 840 301 274 175 54 chr4 33547794 33547960 -122082160 + B4A SINE B4 107 292 0 1 840 410 231 343 0 chr4 33548309 33548443 -122081677 - B3A SINE B2 -18 180 1 1 840 2110 58 7 0 chr4 33548535 33548809 -122081311 - MTB LTR MaLR -95 305 30 1 840 6797 107 10 69 chr4 33548810 33549974 -122080146 - MTB-int LTR MaLR 0 1098 3 1 840 2826 96 89 5 chr4 33549978 33550416 -122079704 - MT2C_Mm LTR ERVL 0 475 1 1 840 571 73 30 50 chr4 33550416 33550517 -122079603 + L1_Mur1 LINE L1 3435 3533 -2353 1 840 1867 139 16 6 chr4 33550521 33550833 -122079287 + Lx3C LINE L1 6660 6974 -2 1 840 384 202 20 50 chr4 33550873 33550972 -122079148 - ID_B1 SINE B4 -1 223 128 1 840 636 242 8 8 chr4 33551208 33551333 -122078787 - ID_B1 SINE B4 -14 210 86 1 840 225 94 0 0 chr4 33551375 33551407 -122078713 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1 840 21 0 0 0 chr4 33551831 33551852 -122078268 + AT_rich Low_complexity Low_complexity 1 21 0 1 840 478 282 77 84 chr4 33551871 33552014 -122078106 - RSINE1 SINE B4 0 165 24 1 840 833 264 81 22 chr4 33552055 33552326 -122077794 - B4A SINE B4 -2 290 4 1 840 180 200 0 0 chr4 33553112 33553187 -122076933 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 841 938 191 112 21 chr4 33555099 33555490 -122074630 - RMER19C LTR ERVK 0 611 342 1 841 3159 51 10 2 chr4 33555520 33555913 -122074207 - MTA_Mm LTR MaLR 0 396 1 1 841 666 282 168 46 chr4 33555923 33556774 -122073346 - L1M2 LINE L1 -1250 4627 3688 1 841 226 242 73 52 chr4 33556762 33556858 -122073262 - L1M2 LINE L1 -3073 2807 2710 1 841 587 0 48 0 chr4 33556908 33556991 -122073129 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 841 452 316 0 0 chr4 33557057 33557174 -122072946 - RSINE1 SINE B4 -46 119 3 1 841 351 44 0 0 chr4 33557522 33557567 -122072553 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 841 772 235 182 4 chr4 33557583 33557814 -122072306 - ORR1D2 LTR MaLR -98 272 1 1 841 245 179 196 0 chr4 33557821 33557877 -122072243 + PB1D10 SINE Alu 22 88 -29 1 841 480 327 25 0 chr4 33558090 33558249 -122071871 + RSINE1 SINE B4 3 165 0 1 841 28 61 0 0 chr4 33558262 33558311 -122071809 + AT_rich Low_complexity Low_complexity 1 49 0 1 841 289 289 42 13 chr4 33558325 33558412 -122071708 + PB1D10 SINE Alu 9 100 -20 1 841 324 0 0 0 chr4 33558417 33558453 -122071667 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 841 1406 95 16 0 chr4 33558916 33559106 -122071014 + B2_Mm2 SINE B2 2 194 -1 1 841 609 144 0 0 chr4 33559107 33559211 -122070909 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 1 841 345 246 276 48 chr4 33559369 33559514 -122070606 - B3A SINE B2 -16 182 5 1 841 860 300 57 4 chr4 33559663 33559927 -122070193 - B4A SINE B4 -4 288 11 1 841 532 212 34 0 chr4 33560401 33560519 -122069601 - B3 SINE B2 -4 212 91 1 841 222 136 0 22 chr4 33560559 33560604 -122069516 + T-rich Low_complexity Low_complexity 4 47 0 1 841 370 301 39 0 chr4 33560790 33560893 -122069227 + PB1D10 SINE Alu 3 109 -8 1 841 1177 49 0 0 chr4 33561017 33561160 -122068960 + B1_Mus2 SINE Alu 5 147 0 1 841 187 29 86 0 chr4 33561165 33561200 -122068920 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 841 589 215 99 0 chr4 33561443 33561564 -122068556 - RSINE1 SINE B4 -28 137 5 1 841 1267 186 116 30 chr4 33561595 33561932 -122068188 - ORR1D1 LTR MaLR -8 366 1 1 841 31 26 0 0 chr4 33562083 33562121 -122067999 + AT_rich Low_complexity Low_complexity 1 38 0 1 841 300 299 11 22 chr4 33562388 33562477 -122067643 + MTE2a LTR MaLR 278 365 -14 1 841 714 274 29 44 chr4 33562748 33562954 -122067166 + ID_B1 SINE B4 1 203 -21 1 841 584 243 142 11 chr4 33563360 33563543 -122066577 - ID_B1 SINE B4 -16 208 2 1 841 433 316 0 0 chr4 33564407 33564521 -122065599 + PB1D10 SINE Alu 1 114 -3 1 841 468 299 55 0 chr4 33564691 33564855 -122065265 - L1_Mur3 LINE L1 -1302 4578 4406 1 841 243 0 0 0 chr4 33564870 33564897 -122065223 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 841 3150 213 198 30 chr4 33564899 33565766 -122064354 - RMER1B Other Other -11 1055 43 1 841 868 266 21 0 chr4 33565854 33566042 -122064078 - B3 SINE B2 -24 192 1 1 841 2065 315 61 19 chr4 33566054 33566716 -122063404 - L1M3 LINE L1 -1765 4375 3690 1 841 855 115 0 0 chr4 33566716 33566846 -122063274 + (TTTC)n Simple_repeat Simple_repeat 2 131 0 1 841 2065 315 61 19 chr4 33566846 33567235 -122062885 - L1M3 LINE L1 -2451 3689 3282 1 841 1066 134 210 0 chr4 33567252 33567438 -122062682 - URR1A DNA MER1_type 0 226 2 1 841 328 130 0 36 chr4 33567444 33567500 -122062620 + B1_Mur1 SINE Alu 96 149 0 1 841 216 200 0 0 chr4 33567570 33567615 -122062505 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 841 1468 158 87 84 chr4 33567624 33567970 -122062150 + ORR1B1 LTR MaLR 39 385 -9 1 841 545 278 6 69 chr4 33569618 33569792 -122060328 - B3A SINE B2 0 198 36 1 841 666 282 66 47 chr4 33570331 33570588 -122059532 - MTD LTR MaLR -156 263 2 1 841 359 234 182 42 chr4 33570592 33570735 -122059385 - L1_Rod LINE L1 -263 5584 5422 1 841 450 212 0 0 chr4 33570735 33570834 -122059286 + (TG)n Simple_repeat Simple_repeat 1 99 0 1 841 355 309 225 4 chr4 33570834 33571110 -122059010 - L1_Mur3 LINE L1 -430 5450 5114 1 841 420 244 22 0 chr4 33571489 33571579 -122058541 + RSINE1 SINE B4 11 102 -63 1 841 25 0 0 0 chr4 33571579 33571604 -122058516 + AT_rich Low_complexity Low_complexity 1 25 0 1 841 338 350 146 7 chr4 33571865 33572009 -122058111 - RSINE1 SINE B4 0 165 2 1 841 429 229 95 27 chr4 33573023 33573171 -122056949 + Lx6 LINE L1 7301 7458 -2 1 841 2752 240 141 92 chr4 33573188 33573804 -122056316 + RLTR22_Mur LTR ERVK 3 588 -1260 1 841 1160 119 65 35 chr4 33573804 33574004 -122056116 + Lx4A LINE L1 6853 7058 0 1 841 2752 242 139 91 chr4 33574004 33574956 -122055164 + RLTR22_Mur LTR ERVK 589 1597 -251 1 841 2026 278 50 153 chr4 33575087 33575578 -122054542 + Lx7 LINE L1 4535 5023 -861 1 841 901 134 0 21 chr4 33575578 33575723 -122054397 + B2_Mm2 SINE B2 2 143 -52 1 841 450 65 0 0 chr4 33575725 33575787 -122054333 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1 841 3141 241 46 25 chr4 33575787 33576484 -122053636 + Lx7 LINE L1 5000 5732 -154 1 841 2019 171 31 11 chr4 33576484 33576844 -122053276 + ORR1B2 LTR MaLR 1 367 0 1 841 3141 240 46 24 chr4 33576844 33576913 -122053207 + Lx7 LINE L1 5722 5791 -89 1 841 731 226 14 0 chr4 33576913 33577059 -122053061 + B1_Mur2 SINE Alu 1 148 -1 1 841 3141 303 81 29 chr4 33577059 33577769 -122052351 + Lx7 LINE L1 5792 6616 -857 1 841 375 278 56 0 chr4 33578725 33578851 -122051269 + MIR SINE MIR 97 229 -33 1 841 373 339 39 0 chr4 33579581 33579711 -122050409 - ID_B1 SINE B4 -9 215 81 1 841 382 268 10 20 chr4 33579786 33579885 -122050235 + PB1D10 SINE Alu 5 102 -15 1 841 402 253 101 25 chr4 33579907 33580065 -122050055 - L1M5 LINE L1 -1530 4616 4447 1 841 301 59 59 0 chr4 33580082 33580133 -122049987 + (TCTCCC)n Simple_repeat Simple_repeat 5 58 0 1 841 444 273 0 10 chr4 33580137 33580237 -122049883 - B1F1 SINE Alu -50 99 1 1 841 282 252 123 23 chr4 33580301 33580431 -122049689 - L1MD LINE L1 -1830 4316 4174 1 841 699 12 0 0 chr4 33580987 33581067 -122049053 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 841 324 0 0 0 chr4 33581067 33581102 -122049018 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 841 822 225 77 24 chr4 33581217 33581316 -122048804 - ORR1D1 LTR MaLR 0 374 276 1 841 1558 185 109 26 chr4 33581316 33581665 -122048455 - ORR1C1 LTR MaLR 0 378 1 1 841 822 225 77 24 chr4 33581665 33581811 -122048309 - ORR1D1 LTR MaLR -99 275 116 1 841 260 235 44 0 chr4 33581812 33581880 -122048240 + B1_Mur1 SINE Alu 59 129 -20 1 841 1063 113 6 17 chr4 33582045 33582225 -122047895 + (CGGG)n Simple_repeat Simple_repeat 3 180 0 1 841 314 265 157 15 chr4 33582402 33582536 -122047584 + B3 SINE B2 63 215 -1 1 841 258 259 163 15 chr4 33582562 33582703 -122047417 + L1MC4 LINE L1 7311 7488 -507 1 841 343 275 11 11 chr4 33582851 33582943 -122047177 + B1F SINE Alu 3 94 -55 1 841 261 0 0 0 chr4 33582946 33582975 -122047145 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 841 253 282 194 47 chr4 33583006 33583182 -122046938 + L1MC4 LINE L1 7691 7908 -87 1 841 949 55 0 0 chr4 33583182 33583309 -122046811 + L1_Mus2 LINE L1 6440 6566 0 1 841 253 282 194 47 chr4 33583309 33583385 -122046735 + L1MC4 LINE L1 7909 7980 -15 1 841 569 290 98 34 chr4 33584266 33584591 -122045529 + L1M3 LINE L1 4465 4810 -1330 1 841 499 142 19 0 chr4 33584695 33584801 -122045319 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 841 297 0 0 0 chr4 33589881 33589914 -122040206 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 841 288 111 0 0 chr4 33590797 33590842 -122039278 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 841 1911 182 88 3 chr4 33591012 33591398 -122038722 + MTD LTR MaLR 1 419 0 1 841 409 252 40 56 chr4 33591642 33591768 -122038352 - B3A SINE B2 -5 193 70 1 841 778 114 36 0 chr4 33591876 33592016 -122038104 - URR1A DNA MER1_type -2 224 80 2 841 844 188 71 6 chr4 33592848 33593030 -122037090 + B2_Mm2 SINE B2 2 195 0 2 841 683 156 348 6 chr4 33593057 33593218 -122036902 + B3 SINE B2 1 216 0 2 841 499 333 126 26 chr4 33594037 33594425 -122035695 + L2a LINE L2 2255 2681 -738 2 841 1131 82 7 0 chr4 33594484 33594631 -122035489 - B1_Mus1 SINE Alu 0 148 1 2 841 205 342 105 0 chr4 33594765 33594879 -122035241 + L2a LINE L2 2959 3084 -342 2 841 1031 54 85 0 chr4 33596422 33596552 -122033568 + B1_Mus2 SINE Alu 1 141 -6 2 841 186 43 0 0 chr4 33596555 33596578 -122033542 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 841 819 252 50 0 chr4 33596701 33596903 -122033217 - B3 SINE B2 0 216 5 2 841 853 181 108 31 chr4 33597001 33597223 -122032897 + ORR1C2 LTR MaLR 15 253 -131 2 841 349 303 31 37 chr4 33597685 33597846 -122032274 + L2 LINE L2 2364 2523 -896 2 841 243 0 0 0 chr4 33598178 33598205 -122031915 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 841 288 111 31 16 chr4 33598246 33598310 -122031810 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 841 225 0 0 0 chr4 33600706 33600731 -122029389 + (T)n Simple_repeat Simple_repeat 1 25 0 2 841 396 0 0 0 chr4 33602238 33602282 -122027838 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 841 390 298 17 50 chr4 33602871 33603051 -122027069 + MamRep434 DNA TcMar 195 368 -58 2 841 480 210 68 34 chr4 33603933 33604081 -122026039 - MTD-int LTR MaLR -4 1254 1102 2 841 820 126 7 59 chr4 33604088 33604240 -122025880 + B1_Mur4 SINE Alu 1 144 -6 2 841 233 29 29 0 chr4 33604311 33604345 -122025775 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2 841 1073 83 0 0 chr4 33604345 33604478 -122025642 - B1_Mus2 SINE Alu -13 134 2 2 841 1073 124 12 0 chr4 33604478 33604647 -122025473 - B2_Mm1t SINE B2 -14 179 9 2 841 1406 226 141 88 chr4 33604663 33605542 -122024578 - MTD-int LTR MaLR -214 1044 1 2 841 1107 211 191 11 chr4 33605542 33605892 -122024228 - MTD LTR MaLR 0 419 7 2 841 240 250 47 0 chr4 33606275 33606339 -122023781 + ID4 SINE ID 3 69 -14 2 841 726 110 0 8 chr4 33606587 33606706 -122023414 + URR1B DNA MER1_type 108 225 0 2 841 233 225 35 70 chr4 33609420 33609506 -122020614 + LTR33A LTR ERVL 60 142 -378 2 841 357 24 0 0 chr4 33609710 33609752 -122020368 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 841 218 0 94 0 chr4 33610147 33610179 -122019941 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 841 222 178 0 43 chr4 33610776 33610823 -122019297 + G-rich Low_complexity Low_complexity 2 46 0 2 841 515 217 109 51 chr4 33611179 33611354 -122018766 + B2_Mm2 SINE B2 1 185 -10 2 841 257 263 10 0 chr4 33612158 33612257 -122017863 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 2 841 2156 124 106 0 chr4 33612357 33612688 -122017432 - ORR1B2 LTR MaLR 0 367 2 2 841 192 97 0 0 chr4 33612935 33612966 -122017154 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 841 216 0 0 0 chr4 33613428 33613452 -122016668 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 841 289 239 57 57 chr4 33614605 33614729 -122015391 + L1MDa LINE L1 454 577 -6056 2 841 333 0 0 0 chr4 33614729 33614766 -122015354 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 841 465 19 0 0 chr4 33614766 33614819 -122015301 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 841 232 316 134 63 chr4 33615084 33615368 -122014752 + MTD LTR MaLR 36 339 -80 2 841 1696 219 106 45 chr4 33615618 33616101 -122014019 + RLTR18B LTR ERVK 1 512 0 2 841 942 312 136 20 chr4 33616378 33617091 -122013029 + L1MDa LINE L1 1275 2070 -4563 2 841 447 315 58 7 chr4 33617268 33617546 -122012574 + L1MDa LINE L1 2504 2795 -3742 2 841 330 45 0 0 chr4 33617726 33617770 -122012350 + (T)n Simple_repeat Simple_repeat 1 44 0 2 841 543 287 0 25 chr4 33617774 33617935 -122012185 + B4A SINE B4 117 273 -19 2 841 740 291 141 32 chr4 33618240 33618962 -122011158 + L1MDa LINE L1 3371 4173 -2364 2 841 1031 66 0 0 chr4 33618995 33619132 -122010988 + B1_Mus1 SINE Alu 3 139 -9 2 841 459 0 0 0 chr4 33619132 33619183 -122010937 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 841 853 106 21 7 chr4 33619184 33619327 -122010793 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 2 841 1520 154 99 7 chr4 33619677 33619971 -122010149 + ORR1B2 LTR MaLR 1 321 -46 2 841 219 133 0 0 chr4 33619998 33620043 -122010077 + (G)n Simple_repeat Simple_repeat 1 45 0 2 841 1903 162 41 36 chr4 33620053 33620443 -122009677 + Lx LINE L1 6261 6652 -2 2 841 2882 196 33 0 chr4 33620574 33621094 -122009026 - Lx6 LINE L1 -573 6887 6351 2 841 1917 164 0 81 chr4 33621101 33621486 -122008634 + ORR1B1 LTR MaLR 41 394 0 2 841 4164 173 37 88 chr4 33621493 33621602 -122008518 + ORR1B1-int LTR MaLR 1 88 -1875 2 841 2053 134 80 100 chr4 33621602 33621942 -122008178 - RLTR23 LTR ERV1 0 430 101 2 841 243 0 0 0 chr4 33621942 33621969 -122008151 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 841 2053 134 80 100 chr4 33621969 33622067 -122008053 - RLTR23 LTR ERV1 -330 100 1 2 841 4164 173 37 88 chr4 33622067 33623053 -122007067 + ORR1B1-int LTR MaLR 89 1040 -923 2 841 4949 59 2 0 chr4 33623077 33623684 -122006436 - L1Md_F2 LINE L1 0 5883 5276 2 841 5107 57 2 8 chr4 33623685 33624319 -122005801 + L1Md_F2 LINE L1 5931 6560 -22 2 841 5285 105 29 98 chr4 33624337 33625342 -122004778 + ORR1B1-int LTR MaLR 1029 1963 0 2 841 1861 140 31 64 chr4 33625349 33625707 -122004413 + ORR1B1 LTR MaLR 41 386 -8 2 841 5685 171 36 58 chr4 33625707 33627358 -122002762 - Lx6 LINE L1 -1101 6359 4727 2 841 845 151 0 6 chr4 33627359 33627451 -122002669 + polypyrimidine Low_complexity Low_complexity 78 169 0 2 841 228 67 0 0 chr4 33627458 33627488 -122002632 + (TTCG)n Simple_repeat Simple_repeat 3 32 0 2 841 1156 68 0 7 chr4 33627488 33627627 -122002493 - B1_Mm SINE Alu -8 139 1 2 841 845 151 0 6 chr4 33627627 33627701 -122002419 + polypyrimidine Low_complexity Low_complexity 4 77 0 2 841 779 162 35 0 chr4 33627668 33627841 -122002279 + CT-rich Low_complexity Low_complexity 2 180 0 2 841 1286 74 73 17 chr4 33627939 33628118 -122002002 - B2_Mm2 SINE B2 -4 191 3 2 841 987 93 0 0 chr4 33628129 33628269 -122001851 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 2 841 1469 149 90 32 chr4 33628285 33628597 -122001523 - Lx6 LINE L1 -1159 4721 4392 2 841 759 59 0 0 chr4 33628597 33628699 -122001421 - ORR1A2 LTR MaLR 0 327 226 2 841 3503 234 68 18 chr4 33628697 33629634 -122000486 - ORR1C1-int LTR MaLR -386 984 1 2 841 1540 162 60 139 chr4 33629638 33629801 -122000319 - ORR1C1 LTR MaLR -8 370 185 2 841 348 64 0 0 chr4 33629801 33629848 -122000272 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 841 1540 162 60 139 chr4 33629848 33630086 -122000034 - ORR1C1 LTR MaLR -194 184 1 2 841 1268 146 122 85 chr4 33630087 33630439 -121999681 - L1_Rod LINE L1 -4160 1687 1323 2 841 269 244 50 12 chr4 33630657 33630755 -121999365 + L1MC4 LINE L1 7942 8027 -15 2 841 581 280 24 68 chr4 33630780 33630987 -121999133 + B3A SINE B2 1 198 0 2 841 238 229 142 17 chr4 33634273 33634393 -121995727 + L2a LINE L2 3282 3416 -10 2 841 1077 90 26 0 chr4 33635104 33635260 -121994860 - L1Md_F2 LINE L1 0 6582 6423 2 841 405 0 0 0 chr4 33635456 33635501 -121994619 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 841 1090 253 45 70 chr4 33635501 33635947 -121994173 - L1M2 LINE L1 -527 5770 5336 2 841 228 307 26 58 chr4 33637372 33637562 -121992558 - L2a LINE L2 -192 3234 3051 2 841 269 301 0 0 chr4 33637647 33637720 -121992400 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 841 294 286 144 54 chr4 33638162 33638273 -121991847 + RSINE1 SINE B4 45 165 0 2 841 411 220 27 40 chr4 33638341 33638460 -121991660 + PB1D7 SINE Alu 2 120 0 2 841 600 263 72 0 chr4 33638476 33638628 -121991492 + B3A SINE B2 5 167 -31 2 841 719 42 0 10 chr4 33638976 33639072 -121991048 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 841 25 0 0 0 chr4 33640643 33640668 -121989452 + AT_rich Low_complexity Low_complexity 1 25 0 2 841 240 86 0 0 chr4 33641895 33641930 -121988190 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 841 180 111 0 0 chr4 33642052 33642079 -121988041 + (A)n Simple_repeat Simple_repeat 1 27 0 2 841 1551 252 159 20 chr4 33644150 33645041 -121985079 - Lx8 LINE L1 -2 7471 6458 2 841 1007 130 0 6 chr4 33646039 33646209 -121983911 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 2 841 31965 107 24 6 chr4 33646238 33652317 -121977803 - L1_Mus2 LINE L1 0 6566 377 2 841 460 298 0 8 chr4 33652675 33652797 -121977323 + ID_B1 SINE B4 93 213 -11 2 841 210 71 0 0 chr4 33652797 33652825 -121977295 + (CAAAG)n Simple_repeat Simple_repeat 1 28 0 2 841 922 239 48 5 chr4 33652866 33653076 -121977044 + ID_B1 SINE B4 1 219 -5 2 841 1160 197 125 10 chr4 33653169 33653466 -121976654 - RLTR15 LTR ERVK -2 357 27 2 841 447 288 35 14 chr4 33653492 33653633 -121976487 + MER2 DNA MER2_type 179 322 -23 2 841 232 70 0 44 chr4 33653768 33653813 -121976307 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 2 841 193 296 12 24 chr4 33654255 33654338 -121975782 + MIRb SINE MIR 186 267 -1 2 841 317 225 11 0 chr4 33656074 33656163 -121973957 + CT-rich Low_complexity Low_complexity 2 91 0 2 841 2220 148 9 55 chr4 33657393 33657844 -121972276 + RLTR28 LTR ERVL 77 506 -18 2 841 235 167 15 77 chr4 33660728 33660793 -121969327 - B4A SINE B4 0 292 232 2 841 306 164 0 0 chr4 33660818 33660873 -121969247 + (CAT)n Simple_repeat Simple_repeat 2 56 0 2 841 811 251 80 24 chr4 33660891 33661103 -121969017 - B4A SINE B4 -68 224 1 2 841 1252 48 0 0 chr4 33661553 33661699 -121968421 + B1_Mus2 SINE Alu 2 147 0 2 841 207 0 0 0 chr4 33661704 33661727 -121968393 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 841 242 257 184 0 chr4 33662111 33662220 -121967900 + MIR SINE MIR 52 180 -82 2 841 1163 51 0 0 chr4 33663018 33663155 -121966965 - B1_Mm SINE Alu -6 141 5 2 841 398 252 44 26 chr4 33663591 33663705 -121966415 + ORR1D2 LTR MaLR 254 369 -1 2 841 3889 263 53 22 chr4 33663886 33664955 -121965165 - Lx7 LINE L1 -330 7366 6265 2 841 1869 174 40 9 chr4 33665133 33665481 -121964639 + ORR1B2 LTR MaLR 1 359 -8 2 841 455 274 0 66 chr4 33665560 33665681 -121964439 - RSINE1 SINE B4 0 165 53 2 841 2294 295 72 33 chr4 33665688 33666595 -121963525 + Lx8 LINE L1 6284 7225 -248 2 841 506 43 14 0 chr4 33666662 33666731 -121963389 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 841 1313 192 235 3 chr4 33666788 33667128 -121962992 + MTD LTR MaLR 1 419 0 2 841 252 293 40 20 chr4 33667641 33667742 -121962378 - MIRc SINE MIR -134 134 32 3 841 26 50 0 0 chr4 33667867 33667907 -121962213 + AT_rich Low_complexity Low_complexity 1 40 0 3 841 482 246 70 0 chr4 33668274 33668416 -121961704 - MER20 DNA MER1_type -67 152 1 3 841 279 264 91 18 chr4 33668586 33668746 -121961374 - L1MB7 LINE L1 -19 6165 5993 3 841 267 262 0 0 chr4 33669559 33669620 -121960500 - MIR SINE MIR -95 167 107 3 841 1395 86 27 0 chr4 33671339 33671526 -121958594 + B2_Mm1a SINE B2 1 192 -1 3 841 491 0 0 17 chr4 33672343 33672403 -121957717 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 841 360 175 0 91 chr4 33672967 33673055 -121957065 - URR1A DNA MER1_type -144 82 3 3 841 363 44 0 0 chr4 33676766 33676811 -121953309 + (TTG)n Simple_repeat Simple_repeat 3 47 0 3 841 1420 166 31 79 chr4 33677910 33678329 -121951791 + RMER17C LTR ERVK 1 399 -11 3 841 1597 182 131 18 chr4 33678398 33678505 -121951615 - ORR1D1 LTR MaLR -1 373 232 3 841 207 0 0 0 chr4 33678505 33678528 -121951592 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 3 841 1597 182 131 18 chr4 33678528 33678755 -121951365 - ORR1D1 LTR MaLR -143 231 2 3 841 323 258 0 0 chr4 33678819 33678885 -121951235 - ID_B1 SINE B4 -42 182 117 3 841 238 314 57 0 chr4 33679207 33679277 -121950843 + BLACKJACK DNA AcHobo 1 74 -2870 3 841 882 261 115 41 chr4 33679398 33679737 -121950383 + MTEa LTR MaLR 8 371 -8 3 841 251 269 124 77 chr4 33679965 33680174 -121949946 - MTEb LTR MaLR -8 371 153 3 841 186 150 0 0 chr4 33680327 33680367 -121949753 + (TTTTTA)n Simple_repeat Simple_repeat 4 43 0 3 841 214 190 17 33 chr4 33680374 33680434 -121949686 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 841 600 164 21 92 chr4 33680447 33680588 -121949532 - Lx5 LINE L1 -71 6979 6849 3 841 183 296 54 27 chr4 33680680 33680791 -121949329 - MER5B DNA MER1_type -56 122 9 3 841 213 318 23 0 chr4 33681363 33681451 -121948669 + CT-rich Low_complexity Low_complexity 4 93 0 3 841 1132 64 0 0 chr4 33681604 33681744 -121948376 - B1_Mus1 SINE Alu -7 141 2 3 841 504 0 0 0 chr4 33682157 33682213 -121947907 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 841 290 196 0 0 chr4 33682223 33682274 -121947846 - BC1_Mm scRNA scRNA -85 67 17 3 841 21 0 0 0 chr4 33683559 33683580 -121946540 + AT_rich Low_complexity Low_complexity 1 21 0 3 841 237 278 19 0 chr4 33683951 33684005 -121946115 + polypyrimidine Low_complexity Low_complexity 3 57 0 3 841 2628 156 172 28 chr4 33684046 33684580 -121945540 + RMER19C LTR ERVK 1 611 0 3 841 251 342 126 5 chr4 33684690 33684936 -121945184 + L2a LINE L2 2868 3140 -286 3 841 398 190 37 25 chr4 33684937 33685018 -121945102 + ID4 SINE ID 2 83 0 3 841 191 61 0 29 chr4 33685067 33685101 -121945019 + (CAAAC)n Simple_repeat Simple_repeat 3 35 0 3 841 333 0 0 0 chr4 33685416 33685453 -121944667 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 842 281 197 14 0 chr4 33687337 33687408 -121942712 + GA-rich Low_complexity Low_complexity 2 73 0 3 842 234 0 0 0 chr4 33687517 33687543 -121942577 + (T)n Simple_repeat Simple_repeat 1 26 0 3 842 276 264 153 9 chr4 33688769 33688880 -121941240 - MLT1H LTR MaLR -38 511 385 3 842 261 284 49 0 chr4 33689033 33689114 -121941006 + MLT1H2 LTR MaLR 381 465 -24 3 842 588 193 0 0 chr4 33689141 33689260 -121940860 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 842 232 336 8 92 chr4 33690252 33690383 -121939737 + MLT1H LTR MaLR 235 354 -195 3 842 1337 233 236 18 chr4 33690459 33690904 -121939216 - RMER15 LTR ERVL 0 575 34 3 842 226 254 95 0 chr4 33690906 33690969 -121939151 - RMER15 LTR ERVL -506 69 1 3 842 1462 211 104 3 chr4 33691249 33691535 -121938585 + MTD LTR MaLR 1 323 -96 3 842 2086 109 51 3 chr4 33691535 33691847 -121938273 - ORR1A2 LTR MaLR 0 327 1 3 842 1462 211 104 3 chr4 33691847 33691926 -121938194 + MTD LTR MaLR 324 403 -16 3 842 577 313 92 0 chr4 33691966 33692161 -121937959 + B4A SINE B4 2 214 -78 3 842 669 279 53 94 chr4 33692179 33692424 -121937696 + Lx8 LINE L1 7093 7327 -146 3 842 450 0 0 0 chr4 33692521 33692571 -121937549 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 842 235 204 130 0 chr4 33692579 33692633 -121937487 + B4A SINE B4 224 284 -8 3 842 291 114 0 0 chr4 33692644 33692688 -121937432 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 842 616 294 118 10 chr4 33692692 33692998 -121937122 + MLT1H-int LTR MaLR 254 592 -817 3 842 298 363 6 48 chr4 33693062 33693227 -121936893 + MLT1H-int LTR MaLR 678 835 -574 3 842 344 313 123 77 chr4 33693239 33693506 -121936614 - LTR40a LTR ERVL -2 460 189 3 842 3612 18 0 0 chr4 33693506 33693902 -121936218 + MTA_Mm LTR MaLR 1 396 0 3 842 344 313 123 77 chr4 33693902 33693966 -121936154 - LTR40a LTR ERVL -274 188 135 3 842 1417 192 60 30 chr4 33693966 33694364 -121935756 + RMER17C LTR ERVK 1 410 0 3 842 345 256 44 10 chr4 33694364 33694471 -121935649 - LTR40a LTR ERVL -328 134 1 3 842 1954 233 64 81 chr4 33694497 33695124 -121934996 - Lx9 LINE L1 -131 7513 6898 3 842 543 295 62 135 chr4 33695154 33695274 -121934846 + MLT1H-int LTR MaLR 917 1014 -395 3 842 492 252 9 0 chr4 33695274 33695389 -121934731 + PB1D10 SINE Alu 2 117 0 3 842 543 295 62 135 chr4 33695389 33695609 -121934511 + MLT1H-int LTR MaLR 1015 1232 -177 3 842 1065 106 0 0 chr4 33696430 33696610 -121933510 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 842 270 164 0 0 chr4 33696617 33696672 -121933448 + CT-rich Low_complexity Low_complexity 3 57 0 3 842 195 42 0 0 chr4 33697625 33697649 -121932471 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 842 352 341 29 18 chr4 33697934 33698104 -121932016 - RMER15 LTR ERVL -57 518 347 3 842 22 0 0 0 chr4 33698471 33698493 -121931627 + AT_rich Low_complexity Low_complexity 1 22 0 3 842 223 284 0 22 chr4 33698667 33698757 -121931363 + (CCCTG)n Simple_repeat Simple_repeat 2 89 0 3 842 622 143 9 0 chr4 33700294 33700406 -121929714 - URR1A DNA MER1_type -34 192 80 3 842 265 232 75 66 chr4 33700760 33700866 -121929254 + MT2B LTR ERVL 151 257 -344 3 842 339 165 165 0 chr4 33700797 33700882 -121929238 + PB1D9 SINE Alu 22 120 0 3 842 19622 70 28 11 chr4 33701764 33704675 -121925445 + L1VL4 LINE L1 196 3139 -420 3 842 507 30 29 57 chr4 33704675 33704780 -121925340 + (CAAA)n Simple_repeat Simple_repeat 2 103 0 3 842 19622 61 21 14 chr4 33704780 33705170 -121924950 + L1VL4 LINE L1 3140 3556 -3 3 842 1089 155 108 26 chr4 33705773 33705924 -121924196 - Lx7 LINE L1 0 7696 7528 3 842 258 105 0 0 chr4 33705924 33705962 -121924158 + (ATATG)n Simple_repeat Simple_repeat 2 39 0 3 842 1089 155 108 26 chr4 33705962 33706042 -121924078 - Lx7 LINE L1 -169 7527 7446 3 842 297 0 0 0 chr4 33706042 33706075 -121924045 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 842 5268 214 79 26 chr4 33706076 33707360 -121922760 - Lx7 LINE L1 -337 7359 6008 3 842 1347 199 27 37 chr4 33707457 33707798 -121922322 - Lx7 LINE L1 -1679 6017 5701 3 842 29 0 0 0 chr4 33708313 33708342 -121921778 + AT_rich Low_complexity Low_complexity 1 29 0 3 842 3527 28 0 2 chr4 33708857 33709254 -121920866 + MTA_Mm LTR MaLR 1 396 0 3 842 288 261 111 42 chr4 33709787 33709931 -121920189 + L1MD LINE L1 4506 4659 -1487 3 842 247 312 102 14 chr4 33710724 33711027 -121919093 - L1MB3 LINE L1 -46 6137 5801 3 842 376 362 64 41 chr4 33711027 33711234 -121918886 + BLACKJACK DNA AcHobo 676 894 -2050 3 842 1436 89 11 0 chr4 33711234 33711424 -121918696 + B2_Mm2 SINE B2 1 192 -3 3 842 376 362 64 41 chr4 33711424 33711559 -121918561 + BLACKJACK DNA AcHobo 895 1026 -1918 3 842 6126 196 79 34 chr4 33711617 33713190 -121916930 - Lx9 LINE L1 -29 7615 5860 3 842 2531 223 54 75 chr4 33713182 33713780 -121916340 - L1_Rod LINE L1 -2425 3422 2848 3 842 2287 111 9 0 chr4 33713780 33714104 -121916016 + ORR1A2 LTR MaLR 1 327 0 3 842 2531 223 54 75 chr4 33714104 33714382 -121915738 - L1_Rod LINE L1 -3000 2847 2565 3 842 1317 194 107 33 chr4 33714379 33714924 -121915196 - L1_Rod LINE L1 -4247 1600 1014 3 842 508 191 104 0 chr4 33714926 33715041 -121915079 - Lx9 LINE L1 -1026 6618 6492 3 842 2099 226 55 47 chr4 33715038 33715586 -121914534 - L1_Rod LINE L1 -6605 1003 452 3 842 449 288 12 59 chr4 33715589 33715702 -121914418 - L1_Rod LINE L1 -6943 229 125 3 842 4416 4 19 0 chr4 33715702 33716186 -121913934 - MT2_Mm LTR ERVL 0 493 1 3 842 449 288 12 59 chr4 33716186 33716242 -121913878 - L1_Rod LINE L1 -7048 124 68 3 842 1235 28 14 0 chr4 33716557 33716702 -121913418 - B1_Mm SINE Alu 0 147 1 3 842 190 289 73 49 chr4 33717036 33717230 -121912890 - MIRm SINE MIR -29 233 41 3 842 614 276 44 14 chr4 33717662 33717949 -121912171 + L1M4c LINE L1 2149 2542 -4560 3 842 298 286 104 31 chr4 33718145 33718405 -121911715 + L1M4c LINE L1 2966 3244 -4090 3 842 3370 68 0 2 chr4 33718502 33718520 -121911600 - L1_Mus1 LINE L1 -553 6014 5997 3 842 5709 66 12 0 chr4 33718520 33719246 -121910874 - L1_Mus1 LINE L1 0 6567 5833 3 842 7983 86 1 1 chr4 33719246 33720432 -121909688 - L1_Mus1 LINE L1 -571 5996 4810 3 842 13660 107 10 11 chr4 33720466 33721774 -121908346 - L1_Mus1 LINE L1 -2124 3759 2452 3 842 6535 49 14 21 chr4 33721774 33722587 -121907533 - RLTR13C2 LTR ERVK -1 807 1 3 842 9004 109 3 7 chr4 33722587 33723482 -121906638 - L1_Mus1 LINE L1 -3432 2451 1554 3 842 5316 146 40 4 chr4 33723475 33724555 -121905565 - L1_Mus1 LINE L1 -5382 1342 184 3 842 181 0 69 0 chr4 33725031 33725060 -121905060 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 842 949 78 0 0 chr4 33725060 33725188 -121904932 - B1_Mus1 SINE Alu -10 138 11 3 842 367 235 67 87 chr4 33725063 33725212 -121904908 - B4A SINE B4 -78 214 69 3 842 2925 44 0 0 chr4 33725972 33726314 -121903806 + ORR1A1 LTR MaLR 5 346 0 3 842 277 341 134 0 chr4 33726316 33726495 -121903625 - MLT1A0 LTR MaLR -9 356 154 3 842 234 278 19 0 chr4 33726531 33726585 -121903535 - ID4 SINE ID -14 69 15 3 842 207 0 0 0 chr4 33727282 33727305 -121902815 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 842 207 0 0 0 chr4 33727626 33727649 -121902471 + (T)n Simple_repeat Simple_repeat 1 23 0 3 842 360 0 0 0 chr4 33727650 33727690 -121902430 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 842 234 0 0 0 chr4 33728669 33728695 -121901425 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 842 374 194 161 0 chr4 33728700 33728793 -121901327 + RSINE1 SINE B4 25 132 -33 3 842 185 350 17 0 chr4 33731139 33731199 -121898921 + L2a LINE L2 3287 3347 -79 3 842 3119 315 47 16 chr4 33731240 33732464 -121897656 + Lx8 LINE L1 6017 7278 -195 3 842 1261 41 0 0 chr4 33732627 33732774 -121897346 - B1_Mus2 SINE Alu 0 147 1 3 842 395 319 0 48 chr4 33732774 33732899 -121897221 - RSINE1 SINE B4 -44 121 3 3 842 213 211 0 0 chr4 33732965 33733017 -121897103 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 842 450 304 7 48 chr4 33733017 33733162 -121896958 - RSINE1 SINE B4 0 165 27 3 842 211 255 71 41 chr4 33733422 33733520 -121896600 - L2 LINE L2 -1886 1533 1433 4 842 213 65 0 0 chr4 33734074 33734105 -121896015 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 842 216 86 0 0 chr4 33734415 33734450 -121895670 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 842 322 47 0 0 chr4 33734451 33734494 -121895626 - B2_Mm2 SINE B2 -106 89 47 4 842 1230 63 17 0 chr4 33734522 33734697 -121895423 - B2_Mm1a SINE B2 -14 179 2 4 842 963 254 9 23 chr4 33735188 33735406 -121894714 + B3 SINE B2 2 216 0 4 842 189 0 0 0 chr4 33735489 33735510 -121894610 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 842 1242 23 34 0 chr4 33735511 33735775 -121894345 + (TCTA)n Simple_repeat Simple_repeat 1 273 0 4 842 270 0 0 0 chr4 33735788 33735818 -121894302 + (CAT)n Simple_repeat Simple_repeat 2 31 0 4 842 458 354 11 11 chr4 33735829 33736006 -121894114 - MER58A DNA MER1_type -47 177 1 4 842 798 184 280 0 chr4 33736161 33736329 -121893791 + B3 SINE B2 1 215 -1 4 842 1943 112 15 60 chr4 33738910 33739244 -121890876 - ORR1A2 LTR MaLR -8 319 1 4 842 577 253 114 29 chr4 33739368 33739543 -121890577 + B3A SINE B2 1 190 -8 4 842 630 292 156 11 chr4 33739589 33740115 -121890005 - L1_Mur3 LINE L1 -393 5907 5236 4 842 32 0 0 0 chr4 33740115 33740147 -121889973 + AT_rich Low_complexity Low_complexity 1 32 0 4 842 778 145 14 14 chr4 33740165 33740312 -121889808 - URR1A DNA MER1_type 0 226 80 4 842 237 217 0 0 chr4 33740337 33740383 -121889737 - L1_Rod LINE L1 -649 5198 5153 4 842 882 113 0 0 chr4 33740449 33740582 -121889538 + (TC)n Simple_repeat Simple_repeat 2 134 0 4 842 807 199 0 27 chr4 33740596 33740746 -121889374 - B1_Mus2 SINE Alu -1 146 1 4 842 486 298 90 82 chr4 33740777 33740847 -121889273 + L1MEc LINE L1 411 474 -5926 4 842 1118 59 0 0 chr4 33740847 33740983 -121889137 + B1_Mus1 SINE Alu 1 136 -12 4 842 486 298 90 82 chr4 33740983 33741267 -121888853 + L1MEc LINE L1 475 768 -5632 4 842 495 0 0 0 chr4 33741315 33741370 -121888750 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 842 272 292 81 38 chr4 33741389 33741574 -121888546 + L1MEc LINE L1 1293 1485 -4915 4 842 695 12 12 0 chr4 33741989 33742073 -121888047 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 842 253 210 0 88 chr4 33742472 33742540 -121887580 + C573_MM Other Other 91 152 -370 4 842 408 229 78 37 chr4 33742684 33742838 -121887282 + MTEa LTR MaLR 201 366 -13 4 842 2656 167 90 25 chr4 33744365 33744954 -121885166 + RMER20B LTR ERVK 1 627 0 4 842 333 333 147 18 chr4 33745004 33745493 -121884627 - L1ME1 LINE L1 -226 5953 5402 4 842 225 108 0 0 chr4 33745773 33745810 -121884310 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 842 643 141 39 47 chr4 33746187 33746314 -121883806 + B1_Mus1 SINE Alu 23 148 0 4 842 197 33 33 0 chr4 33746315 33746345 -121883775 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 4 842 341 214 12 23 chr4 33746899 33746985 -121883135 - L1MCc LINE L1 -5513 910 826 4 842 1490 247 111 12 chr4 33747865 33748396 -121881724 - Lx6 LINE L1 -56 7404 6450 4 842 2298 179 41 43 chr4 33748454 33748991 -121881129 + Lx6 LINE L1 5696 6231 -1229 4 842 1539 166 68 81 chr4 33748995 33749102 -121881018 + RMER17C LTR ERVK 16 76 -334 4 842 216 0 0 0 chr4 33749102 33749126 -121880994 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 842 1539 135 58 106 chr4 33749126 33749479 -121880641 + RMER17C LTR ERVK 77 409 -1 4 842 1039 229 1 0 chr4 33749480 33749723 -121880397 + Lx6 LINE L1 6255 6715 -745 4 842 285 29 0 0 chr4 33750379 33750413 -121879707 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 842 198 0 0 0 chr4 33750438 33750460 -121879660 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4 842 307 267 153 69 chr4 33752217 33752406 -121877714 + MLT1D LTR MaLR 30 234 -271 4 842 1138 223 38 88 chr4 33752540 33752938 -121877182 - MTD LTR MaLR 0 419 42 4 842 235 200 0 0 chr4 33754481 33754526 -121875594 + C-rich Low_complexity Low_complexity 1 45 0 4 842 850 236 0 0 chr4 33757165 33757330 -121872790 + B3 SINE B2 1 165 -51 4 842 333 0 0 0 chr4 33757330 33757367 -121872753 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 842 582 15 0 0 chr4 33757367 33757433 -121872687 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 842 742 263 20 25 chr4 33757433 33757465 -121872655 + B3A SINE B2 165 197 -1 4 842 686 197 116 54 chr4 33757978 33758219 -121871901 - Lx9 LINE L1 0 7644 7389 4 842 2760 162 74 35 chr4 33758270 33758841 -121871279 - Lx9 LINE L1 -446 7198 6606 4 842 756 0 0 0 chr4 33758907 33758991 -121871129 + (TTC)n Simple_repeat Simple_repeat 1 84 0 4 842 1433 235 83 13 chr4 33760489 33760873 -121869247 + L1_Rod LINE L1 136 546 -6626 4 842 1270 52 8 26 chr4 33760875 33761110 -121869010 + (TATATG)n Simple_repeat Simple_repeat 1 230 0 4 842 298 222 144 4 chr4 33761272 33761402 -121868718 - MLT1C LTR MaLR -169 221 61 4 842 381 259 0 0 chr4 33761922 33762096 -121868024 + GA-rich Low_complexity Low_complexity 2 175 0 4 842 288 155 0 65 chr4 33762100 33762162 -121867958 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 4 842 321 26 0 0 chr4 33762405 33762443 -121867677 + (CG)n Simple_repeat Simple_repeat 1 38 0 4 842 270 0 0 0 chr4 33762443 33762472 -121867648 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 842 504 219 70 0 chr4 33762472 33762586 -121867534 - RSINE1 SINE B4 -41 124 3 4 842 270 0 0 0 chr4 33762738 33762768 -121867352 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 842 500 332 89 102 chr4 33762886 33763358 -121866762 + MLT1F2 LTR MaLR 11 476 -84 4 842 5837 12 0 0 chr4 33763358 33764009 -121866111 + L1Md_T LINE L1 4936 5586 -297 4 842 8618 30 2 0 chr4 33764009 33765003 -121865117 + L1Md_T LINE L1 5587 6582 0 4 842 965 206 80 0 chr4 33765359 33765558 -121864562 + B3 SINE B2 2 216 0 4 842 408 287 111 74 chr4 33766797 33767094 -121863026 - HAL1 LINE L1 -689 1818 1511 4 842 2714 243 188 38 chr4 33767167 33768168 -121861952 - RMER1A Other Other -46 984 43 4 842 714 263 81 0 chr4 33768620 33768818 -121861302 - B3 SINE B2 -1 215 2 4 842 6870 35 2 4 chr4 33768881 33769693 -121860427 - L1Md_F2 LINE L1 0 6582 5772 4 842 4069 56 4 4 chr4 33769693 33770195 -121859925 - L1Md_F LINE L1 -5728 791 290 4 842 229 163 0 44 chr4 33770228 33770273 -121859847 + CT-rich Low_complexity Low_complexity 2 44 0 4 842 427 332 45 45 chr4 33770289 33770579 -121859541 - B4A SINE B4 -2 290 1 4 842 25 65 0 0 chr4 33770592 33770638 -121859482 + AT_rich Low_complexity Low_complexity 1 46 0 4 842 5072 248 74 17 chr4 33770755 33771842 -121858278 - Lx7 LINE L1 -628 7068 5909 4 842 432 55 0 0 chr4 33771842 33771897 -121858223 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 4 842 5072 253 78 16 chr4 33771897 33772379 -121857741 - Lx7 LINE L1 -1788 5908 5394 4 842 1078 91 133 0 chr4 33772483 33772648 -121857472 + B2_Mm2 SINE B2 1 187 -8 4 842 25 0 0 0 chr4 33772701 33772726 -121857394 + AT_rich Low_complexity Low_complexity 1 25 0 4 842 557 310 0 19 chr4 33772726 33772887 -121857233 - RSINE1 SINE B4 -4 161 4 4 842 249 33 0 0 chr4 33773068 33773098 -121857022 + (TATAA)n Simple_repeat Simple_repeat 3 32 0 4 842 377 300 28 35 chr4 33773181 33773326 -121856794 + L1ME2 LINE L1 6000 6143 -21 4 842 259 239 0 140 chr4 33774123 33774230 -121855890 + L2c LINE L2 3294 3385 -2 4 842 198 0 0 0 chr4 33775688 33775710 -121854410 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 842 381 282 31 63 chr4 33775915 33776074 -121854046 - RSINE1 SINE B4 0 165 12 4 842 495 73 0 0 chr4 33776147 33776215 -121853905 + (TCCCC)n Simple_repeat Simple_repeat 4 71 0 4 842 22 35 0 0 chr4 33776834 33776863 -121853257 + AT_rich Low_complexity Low_complexity 1 29 0 4 842 219 69 0 0 chr4 33776976 33777005 -121853115 + (CATA)n Simple_repeat Simple_repeat 4 32 0 4 842 1089 315 26 0 chr4 33777133 33777476 -121852644 + MTEa LTR MaLR 27 378 -1 4 842 181 244 22 0 chr4 33777477 33777522 -121852598 + L2b LINE L2 3330 3375 0 4 842 780 192 108 28 chr4 33778329 33778543 -121851577 + MTD LTR MaLR 1 231 -188 4 842 196 150 0 48 chr4 33779018 33779081 -121851039 + A-rich Low_complexity Low_complexity 2 61 0 4 842 509 250 46 15 chr4 33779107 33779237 -121850883 - B1F SINE Alu -5 144 11 4 842 480 35 0 0 chr4 33779703 33779761 -121850359 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 842 208 0 62 0 chr4 33780100 33780132 -121849988 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 842 276 336 27 36 chr4 33780135 33780246 -121849874 - PB1D10 SINE Alu -7 110 1 4 842 26 0 0 0 chr4 33780452 33780478 -121849642 + AT_rich Low_complexity Low_complexity 1 26 0 4 842 28 48 0 0 chr4 33780994 33781036 -121849084 + AT_rich Low_complexity Low_complexity 1 42 0 4 842 301 260 133 39 chr4 33781642 33781770 -121848350 + B1F SINE Alu 1 140 -9 4 842 274 284 80 0 chr4 33781922 33782010 -121848110 + L1MA4A LINE L1 5821 5915 -388 4 842 283 330 72 46 chr4 33782254 33782551 -121847569 + MTEb LTR MaLR 2 326 -53 4 842 871 78 0 62 chr4 33782556 33782748 -121847372 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 842 559 72 11 82 chr4 33782748 33782930 -121847190 + CT-rich Low_complexity Low_complexity 4 172 0 4 842 330 26 0 0 chr4 33782933 33782972 -121847148 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 842 1108 66 0 0 chr4 33782972 33783109 -121847011 - B1_Mm SINE Alu -10 137 1 4 842 420 128 64 0 chr4 33784484 33784593 -121845527 + C-rich Low_complexity Low_complexity 4 119 0 4 842 526 92 11 0 chr4 33784593 33784680 -121845440 - ORR1A2 LTR MaLR -239 88 1 4 842 717 198 77 20 chr4 33785357 33785563 -121844557 - B3A SINE B2 -5 211 3 4 842 378 0 0 0 chr4 33785815 33785857 -121844263 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 842 855 30 0 0 chr4 33786224 33786325 -121843795 - L1Md_T LINE L1 -1043 4840 4740 4 842 6778 11 0 0 chr4 33786325 33787075 -121843045 + L1Md_T LINE L1 4837 5586 -297 4 842 8579 34 0 0 chr4 33787075 33788070 -121842050 + L1Md_T LINE L1 5587 6581 -1 4 842 371 306 102 10 chr4 33788171 33788458 -121841662 + L1ME2 LINE L1 5022 5331 -815 5 842 500 136 11 0 chr4 33788470 33788558 -121841562 + (GGAGAA)n Simple_repeat Simple_repeat 3 91 0 5 842 354 23 0 0 chr4 33788556 33788599 -121841521 + (CAG)n Simple_repeat Simple_repeat 2 44 0 5 842 484 299 211 26 chr4 33788647 33789183 -121840937 + L1ME2 LINE L1 5511 6144 -20 5 842 366 324 104 47 chr4 33789319 33789617 -121840503 + MLT1F2 LTR MaLR 171 485 -75 5 842 242 280 112 95 chr4 33789898 33790139 -121839981 - MLT2B5 LTR ERVL -232 369 125 5 842 419 220 61 25 chr4 33790095 33790231 -121839889 - MTEa LTR MaLR -239 140 1 5 842 749 260 56 5 chr4 33790436 33790633 -121839487 - B3 SINE B2 -8 208 2 5 842 261 312 31 31 chr4 33790750 33790846 -121839274 - ORR1E LTR MaLR -25 354 259 5 842 417 258 71 41 chr4 33790868 33791038 -121839082 - ORR1E LTR MaLR -182 177 3 5 842 399 222 20 20 chr4 33791080 33791181 -121838939 + PB1D10 SINE Alu 17 117 0 5 842 543 31 0 0 chr4 33791257 33791322 -121838798 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 5 842 2845 275 57 26 chr4 33791840 33791911 -121838209 + Lx8 LINE L1 6224 6294 -1179 5 842 926 236 68 107 chr4 33791911 33792305 -121837815 + MTE2a LTR MaLR 1 379 0 5 842 2845 275 57 26 chr4 33792305 33793122 -121836998 + Lx8 LINE L1 6295 7140 -333 5 842 1115 21 7 0 chr4 33793256 33793398 -121836722 + B1_Mus1 SINE Alu 6 148 0 5 842 229 26 26 26 chr4 33793402 33793441 -121836679 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 842 544 286 34 17 chr4 33794036 33794214 -121835906 + MT2A LTR ERVL 219 399 -134 5 842 465 259 72 131 chr4 33794511 33794885 -121835235 - MLT1B LTR MaLR -31 359 8 5 842 676 283 11 16 chr4 33795324 33795507 -121834613 - B3 SINE B2 -34 182 1 5 842 333 0 0 0 chr4 33796744 33796781 -121833339 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 842 285 347 19 34 chr4 33796796 33797002 -121833118 + L1MC4a LINE L1 7678 7880 -2 5 842 1246 70 0 15 chr4 33797429 33797690 -121832430 + (TCCCC)n Simple_repeat Simple_repeat 1 257 0 5 842 558 0 0 0 chr4 33797696 33797758 -121832362 + (TTC)n Simple_repeat Simple_repeat 2 63 0 5 842 1853 173 34 0 chr4 33797773 33798125 -121831995 + MTD LTR MaLR 20 383 -36 5 842 307 313 32 26 chr4 33798329 33798483 -121831637 - L1MD LINE L1 -931 5215 5061 5 842 409 309 188 29 chr4 33798650 33799140 -121830980 + L1M4 LINE L1 2174 2741 -3405 5 842 237 280 40 13 chr4 33799887 33799963 -121830157 + MLT2D LTR ERVL 465 542 -18 5 842 467 312 37 0 chr4 33800119 33800308 -121829812 + L1MB5 LINE L1 5662 5857 -317 5 842 3836 86 68 19 chr4 33800365 33800934 -121829186 - Lx LINE L1 -12 6642 6046 5 842 1991 171 47 32 chr4 33800998 33801297 -121828823 + Lx5 LINE L1 6636 6932 -118 5 842 306 0 0 0 chr4 33801297 33801331 -121828789 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 842 1991 171 47 32 chr4 33801331 33801437 -121828683 + Lx5 LINE L1 6933 7046 -4 5 842 254 204 0 0 chr4 33801661 33801705 -121828415 + RSINE1 SINE B4 3 46 -119 5 842 702 233 0 0 chr4 33801748 33802020 -121828100 + (CA)n Simple_repeat Simple_repeat 1 272 0 5 842 341 83 0 0 chr4 33802020 33802068 -121828052 + HAL1-3A_ME LINE L1 1975 2022 -836 5 842 236 327 45 0 chr4 33802184 33802294 -121827826 + LTR78 LTR ERV1 1144 1258 -46 5 842 1864 112 56 48 chr4 33802989 33803326 -121826794 - Lx2 LINE L1 -6 6991 6652 5 842 2146 112 0 3 chr4 33804941 33805246 -121824874 + Lx2 LINE L1 6694 6997 0 5 842 24 0 0 0 chr4 33805629 33805653 -121824467 + AT_rich Low_complexity Low_complexity 1 24 0 5 842 24 0 0 0 chr4 33805707 33805731 -121824389 + AT_rich Low_complexity Low_complexity 1 24 0 5 842 464 316 184 0 chr4 33805915 33806149 -121823971 + MTEa LTR MaLR 101 377 -2 5 842 215 333 12 36 chr4 33807146 33807230 -121822890 - MIR3 SINE MIR -7 201 120 5 842 210 37 0 0 chr4 33808978 33809005 -121821115 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 842 1470 254 79 2 chr4 33809668 33810111 -121820009 + L1_Rod LINE L1 898 1374 -4473 5 842 1495 171 147 30 chr4 33810111 33810448 -121819672 - MTD LTR MaLR 0 419 41 5 842 722 205 28 47 chr4 33810448 33810663 -121819457 - MTD-int LTR MaLR 0 1258 1048 5 842 1195 42 7 0 chr4 33810692 33810836 -121819284 + B1_Mus1 SINE Alu 3 147 -1 5 842 7516 210 70 32 chr4 33810907 33812920 -121817200 + Lx9 LINE L1 1757 3845 -2035 5 842 1279 88 72 0 chr4 33812920 33813101 -121817019 + B2_Mm2 SINE B2 2 195 0 5 842 7516 210 70 32 chr4 33813101 33813124 -121816996 + Lx9 LINE L1 3846 3869 -2011 5 842 3773 265 54 22 chr4 33813115 33814445 -121815675 + Lx9 LINE L1 4686 6062 -1582 5 842 616 242 281 16 chr4 33814453 33814709 -121815411 - Lx6 LINE L1 -26 7434 7111 5 842 515 204 0 37 chr4 33814738 33814845 -121815275 - Lx5 LINE L1 -1029 6021 5919 5 842 2680 245 134 23 chr4 33814845 33815675 -121814445 + Lx9 LINE L1 6047 6968 -676 5 842 3546 20 2 0 chr4 33815742 33816137 -121813983 - MTA_Mm LTR MaLR 0 396 1 5 842 500 118 0 23 chr4 33816507 33816553 -121813567 + (GGA)n Simple_repeat Simple_repeat 2 47 0 5 105 1017 153 0 0 chr4 33816553 33816729 -121813391 + GA-rich Low_complexity Low_complexity 3 178 0 5 843 500 118 0 23 chr4 33816729 33816769 -121813351 + (GGA)n Simple_repeat Simple_repeat 3 41 0 5 843 1290 80 0 0 chr4 33816769 33816945 -121813175 + (GAA)n Simple_repeat Simple_repeat 3 178 0 5 843 225 94 0 0 chr4 33816947 33816979 -121813141 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 5 843 250 333 20 0 chr4 33818031 33818130 -121811990 + MER5A DNA MER1_type 89 189 0 5 843 1214 61 0 0 chr4 33820239 33820387 -121809733 + B1_Mus1 SINE Alu 1 148 0 5 843 250 369 116 22 chr4 33820606 33820961 -121809159 + L2c LINE L2 2365 2752 -667 5 843 184 296 137 17 chr4 33821523 33821640 -121808480 + L2c LINE L2 3257 3387 0 5 843 196 348 0 14 chr4 33822450 33822520 -121807600 - MIR3 SINE MIR -137 71 3 5 843 279 0 0 0 chr4 33822994 33823025 -121807095 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 843 209 213 0 0 chr4 33823927 33823974 -121806146 + A-rich Low_complexity Low_complexity 1 47 0 5 843 304 209 0 69 chr4 33824196 33824268 -121805852 + RMER30 DNA MER1_type 9 75 -127 5 843 210 37 0 0 chr4 33824347 33824374 -121805746 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 843 234 0 0 0 chr4 33824976 33825002 -121805118 + (A)n Simple_repeat Simple_repeat 1 26 0 5 843 207 0 0 0 chr4 33825262 33825285 -121804835 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 843 21 0 0 0 chr4 33825488 33825509 -121804611 + AT_rich Low_complexity Low_complexity 1 21 0 5 843 1866 202 41 31 chr4 33827017 33827431 -121802689 - MTD LTR MaLR 0 419 2 5 843 181 381 67 0 chr4 33829557 33829662 -121800458 + L2 LINE L2 2966 3077 -342 5 843 1018 190 36 104 chr4 33829730 33830188 -121799932 + MTC LTR MaLR 1 412 -9 5 843 180 325 51 25 chr4 33830323 33830402 -121799718 - MIRc SINE MIR -148 120 40 5 843 278 327 89 35 chr4 33831077 33831359 -121798761 - LTR40b LTR ERVL -75 387 91 5 843 374 345 0 0 chr4 33831714 33831827 -121798293 - PB1D10 SINE Alu -1 116 4 5 843 296 269 140 37 chr4 33833021 33833245 -121796875 + MLT1C-int LTR MaLR 85 455 -916 5 843 481 282 113 50 chr4 33833306 33833545 -121796575 + MLT1C LTR MaLR 206 459 -8 5 843 536 338 104 46 chr4 33834166 33834771 -121795349 + L2 LINE L2 2134 2773 -646 5 843 391 382 159 42 chr4 33834900 33835258 -121794862 + LTR16A LTR ERVL 37 436 -15 5 843 190 354 0 15 chr4 33835287 33835353 -121794767 + L3 LINE CR1 3923 3987 -502 5 843 235 239 97 14 chr4 33836013 33836085 -121794035 - ID4_ SINE ID -2 81 4 5 843 495 0 0 0 chr4 33836628 33836683 -121793437 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 843 219 36 0 0 chr4 33837304 33837332 -121792788 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 843 360 0 0 0 chr4 33837332 33837371 -121792749 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 843 435 180 16 16 chr4 33837772 33837837 -121792283 + polypyrimidine Low_complexity Low_complexity 61 126 0 5 843 563 102 0 11 chr4 33837837 33837926 -121792194 + (CAT)n Simple_repeat Simple_repeat 1 88 0 5 843 435 180 16 16 chr4 33837926 33837984 -121792136 + polypyrimidine Low_complexity Low_complexity 4 60 0 5 843 505 325 0 0 chr4 33838029 33838155 -121791965 - B1F SINE Alu -23 126 1 5 843 229 258 12 195 chr4 33838155 33838210 -121791910 - RLTR25A LTR ERVK -631 472 448 5 843 309 289 36 80 chr4 33838322 33838450 -121791670 + MIR3 SINE MIR 54 173 -35 5 843 280 288 168 78 chr4 33839208 33839517 -121790603 + MamRep434 DNA TcMar 2 338 -88 5 843 1168 206 16 16 chr4 33839618 33839869 -121790251 - Lx9 LINE L1 -307 7337 7087 5 843 1192 235 78 32 chr4 33839872 33840180 -121789940 + Lx9 LINE L1 6743 7064 -580 5 843 230 135 0 0 chr4 33840620 33840657 -121789463 + Lx9 LINE L1 7058 7094 -550 5 843 312 322 0 0 chr4 33840811 33840988 -121789132 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 5 843 318 157 0 0 chr4 33840995 33841078 -121789042 + CT-rich Low_complexity Low_complexity 2 84 0 5 843 504 0 0 0 chr4 33841130 33841186 -121788934 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 843 193 267 200 0 chr4 33841784 33841859 -121788261 + MIRb SINE MIR 117 206 -62 5 843 206 345 70 17 chr4 33842707 33842822 -121787298 - L3 LINE CR1 -7 4482 4362 5 843 2613 53 6 6 chr4 33842852 33843172 -121786948 + L1_Mus2 LINE L1 6246 6565 -1 5 843 269 323 41 20 chr4 33843346 33843444 -121786676 + PB1D10 SINE Alu 5 104 -13 5 843 419 302 17 8 chr4 33844516 33844633 -121785487 - ID_B1 SINE B4 -3 221 104 5 843 1293 257 114 35 chr4 33845027 33845370 -121784750 - ORR1D2 LTR MaLR 0 370 1 5 843 233 279 177 68 chr4 33846723 33846915 -121783205 - MLT1F1 LTR MaLR -50 519 307 5 843 308 279 131 62 chr4 33846975 33847151 -121782969 - MLT1F1 LTR MaLR -373 196 9 5 843 315 324 32 60 chr4 33847699 33847916 -121782204 - L1M5 LINE L1 -304 5820 5610 5 843 995 100 0 7 chr4 33847917 33848068 -121782052 + (TTC)n Simple_repeat Simple_repeat 1 150 0 5 843 267 261 41 100 chr4 33848106 33848276 -121781844 - L1MC5 LINE L1 -49 7912 7753 5 843 229 178 44 0 chr4 33848402 33848447 -121781673 + L1MC LINE L1 5138 5184 -962 5 843 395 289 139 20 chr4 33848829 33849085 -121781035 + L1MD2 LINE L1 5623 5925 -519 6 843 28 0 0 0 chr4 33850504 33850532 -121779588 + AT_rich Low_complexity Low_complexity 1 28 0 6 843 721 272 73 44 chr4 33851483 33851955 -121778165 + RMER5 LTR ERV1 3 534 0 6 843 240 171 14 54 chr4 33852410 33852484 -121777636 + A-rich Low_complexity Low_complexity 1 71 0 6 843 3544 253 77 23 chr4 33852502 33853504 -121776616 - Lx7 LINE L1 -365 7331 6276 6 843 1786 58 102 78 chr4 33853507 33853790 -121776330 - L1_Mus2 LINE L1 0 6566 6277 6 843 399 98 0 0 chr4 33853805 33853866 -121776254 + (CATA)n Simple_repeat Simple_repeat 2 62 0 6 843 25 0 0 0 chr4 33854319 33854344 -121775776 + AT_rich Low_complexity Low_complexity 1 25 0 6 843 459 0 0 0 chr4 33854757 33854808 -121775312 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 843 185 149 0 41 chr4 33855097 33855146 -121774974 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 6 843 286 297 35 35 chr4 33855270 33855385 -121774735 - PB1D10 SINE Alu -1 116 2 6 843 3777 64 0 0 chr4 33855708 33856147 -121773973 + L1Md_F2 LINE L1 6132 6570 -12 6 843 680 228 8 8 chr4 33856160 33856288 -121773832 - B3A SINE B2 -70 128 1 6 843 829 341 22 15 chr4 33856373 33856644 -121773476 + B4A SINE B4 8 280 -12 6 843 275 214 48 0 chr4 33857333 33857417 -121772703 + Lx6 LINE L1 877 964 -6764 6 843 12473 183 35 36 chr4 33857415 33857745 -121772375 + Lx6 LINE L1 1725 2057 -3823 6 843 402 74 0 0 chr4 33857745 33857799 -121772321 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 843 12473 183 35 36 chr4 33857799 33857811 -121772309 + Lx6 LINE L1 2058 2074 -3806 6 843 194 62 31 0 chr4 33857811 33857843 -121772277 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 843 12473 183 35 36 chr4 33857843 33858986 -121771134 + Lx6 LINE L1 2075 3223 -2657 6 843 1144 94 0 0 chr4 33858986 33859124 -121770996 + B1_Mm SINE Alu 1 138 -9 6 843 12473 183 35 36 chr4 33859124 33860189 -121769931 + Lx6 LINE L1 3224 4286 -1594 6 843 249 33 0 0 chr4 33860189 33860219 -121769901 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 6 843 12473 183 35 36 chr4 33860219 33860399 -121769721 + Lx6 LINE L1 4287 4455 -1425 6 843 2647 245 35 59 chr4 33860395 33861854 -121768266 + Lx6 LINE L1 5435 7032 -18 6 843 658 252 44 0 chr4 33862717 33862852 -121767268 - B1F1 SINE Alu -7 142 2 6 843 1777 246 37 3 chr4 33862912 33863291 -121766829 - MTD LTR MaLR -14 405 14 6 843 1063 89 6 22 chr4 33864203 33864386 -121765734 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 843 573 115 0 0 chr4 33864386 33864473 -121765647 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 6 843 405 0 0 0 chr4 33864692 33864737 -121765383 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 843 784 257 39 10 chr4 33865086 33865290 -121764830 - B3 SINE B2 -3 213 4 6 843 1886 142 15 57 chr4 33865365 33865701 -121764419 + RLTRETN_Mm LTR ERVK 1 322 0 6 843 330 26 0 0 chr4 33870170 33870209 -121759911 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 843 293 159 0 16 chr4 33870650 33870714 -121759406 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 843 306 217 0 0 chr4 33871543 33871612 -121758508 + CT-rich Low_complexity Low_complexity 1 69 0 6 843 671 166 7 54 chr4 33873361 33873508 -121756612 - URR1A DNA MER1_type -6 220 81 6 843 958 247 98 8 chr4 33874704 33874969 -121755151 - MLT1A0 LTR MaLR 0 365 77 6 843 258 204 56 0 chr4 33875136 33875190 -121754930 + B1F2 SINE Alu 42 98 -51 6 843 267 301 133 13 chr4 33875207 33875365 -121754755 + L1MD LINE L1 2400 2576 -3570 6 843 878 260 126 25 chr4 33875524 33876162 -121753958 + L1MD LINE L1 2851 3583 -2563 6 843 459 0 0 0 chr4 33876162 33876213 -121753907 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 843 751 269 188 20 chr4 33876213 33876318 -121753802 + L1MD LINE L1 3584 3737 -2409 6 843 462 254 48 43 chr4 33876424 33876634 -121753486 + L1MC4a LINE L1 4370 4580 -1566 6 843 23 33 0 0 chr4 33877188 33877218 -121752902 + AT_rich Low_complexity Low_complexity 1 30 0 6 843 261 0 0 0 chr4 33877576 33877605 -121752515 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 843 480 270 0 0 chr4 33878142 33878242 -121751878 + PB1D10 SINE Alu 3 102 -15 6 843 279 0 0 0 chr4 33878245 33878276 -121751844 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 843 360 111 0 0 chr4 33878507 33878561 -121751559 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 843 313 375 88 65 chr4 33878705 33878999 -121751121 + L1MC4a LINE L1 5610 5910 -1972 6 843 554 281 81 96 chr4 33879926 33880261 -121749859 - ORR1E LTR MaLR -2 357 28 6 843 940 0 17 9 chr4 33880798 33880914 -121749206 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 6 843 180 0 0 0 chr4 33883464 33883484 -121746636 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 843 902 275 141 14 chr4 33883519 33883866 -121746254 + MLT1C LTR MaLR 10 400 -67 6 843 207 0 0 0 chr4 33884173 33884196 -121745924 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 843 1107 65 0 35 chr4 33884196 33884339 -121745781 - B1_Mus2 SINE Alu -9 138 1 6 843 519 125 0 0 chr4 33886670 33886774 -121743346 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 843 270 136 0 0 chr4 33887661 33887705 -121742415 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 843 4270 153 108 50 chr4 33888258 33889097 -121741023 + RMER19B LTR ERVK 3 890 -12 6 843 1200 111 0 0 chr4 33889237 33889417 -121740703 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 843 3510 112 10 27 chr4 33889422 33889938 -121740182 - Lx2A1 LINE L1 -13 6995 6489 6 843 198 0 0 0 chr4 33890338 33890360 -121739760 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 6 843 316 243 27 36 chr4 33890928 33891039 -121739081 - L1MD LINE L1 -3739 2407 2298 6 843 797 311 81 0 chr4 33891529 33891789 -121738331 + B4A SINE B4 1 281 -11 6 843 886 275 113 30 chr4 33891877 33892143 -121737977 + B4 SINE B4 1 288 -4 6 843 198 167 0 0 chr4 33892292 33892328 -121737792 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 843 500 45 0 15 chr4 33892337 33892405 -121737715 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 843 225 0 0 0 chr4 33892471 33892496 -121737624 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 843 1301 256 118 14 chr4 33892663 33893027 -121737093 + MTD LTR MaLR 18 419 0 6 843 272 233 60 111 chr4 33893054 33893271 -121736849 + Lx9 LINE L1 7424 7629 -15 6 843 836 281 88 27 chr4 33894289 33894618 -121735502 + RMER15-int LTR ERVL 383 731 -4268 6 843 1383 213 165 11 chr4 33894618 33894907 -121735213 + MTD LTR MaLR 1 340 -79 6 843 2767 158 15 21 chr4 33894907 33895372 -121734748 + Lx2B LINE L1 6539 7000 0 6 843 1383 213 165 11 chr4 33895372 33895433 -121734687 + MTD LTR MaLR 341 404 -15 6 843 465 276 53 48 chr4 33895446 33895652 -121734468 + RMER15-int LTR ERVL 727 933 -4066 6 843 370 250 28 0 chr4 33895714 33895786 -121734334 - ID4_ SINE ID -8 75 2 6 843 638 285 89 15 chr4 33896267 33896470 -121733650 + RMER15-int LTR ERVL 1081 1298 -3701 6 843 1552 91 8 24 chr4 33896470 33896718 -121733402 - Lx4B LINE L1 -907 6151 5908 6 843 1693 203 9 9 chr4 33896720 33897053 -121733067 + Lx4B LINE L1 6709 7041 -17 6 843 1550 337 86 43 chr4 33897072 33897357 -121732763 + RMER15-int LTR ERVL 1289 1574 -3425 6 843 213 65 0 0 chr4 33897357 33897388 -121732732 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 843 1550 337 86 43 chr4 33897388 33897995 -121732125 + RMER15-int LTR ERVL 1575 2219 -2780 6 843 1781 295 87 29 chr4 33898092 33898382 -121731738 + Lx8 LINE L1 6187 6502 -971 6 843 2078 172 36 6 chr4 33898382 33898738 -121731382 + ORR1B2 LTR MaLR 1 367 0 6 843 1781 295 87 29 chr4 33898738 33899275 -121730845 + Lx8 LINE L1 6503 7061 -412 6 843 770 343 20 20 chr4 33899420 33899712 -121730408 + RMER15 LTR ERVL 267 558 -17 6 843 486 0 0 0 chr4 33899714 33899768 -121730352 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 843 223 342 18 18 chr4 33900015 33900128 -121729992 + L2 LINE L2 2558 2670 -749 6 843 181 250 162 0 chr4 33900459 33900527 -121729593 + L2b LINE L2 3292 3370 -5 6 843 1021 148 0 0 chr4 33900934 33901076 -121729044 + B1_Mur4 SINE Alu 4 145 -5 6 843 805 269 16 16 chr4 33901431 33901620 -121728500 - B3A SINE B2 -6 192 4 6 843 5903 116 17 35 chr4 33901682 33902219 -121727901 + L1_Mus2 LINE L1 436 963 -5675 6 843 2760 31 0 47 chr4 33902219 33902557 -121727563 - RLTRETN_Mm LTR ERVK 0 322 1 6 843 31872 109 10 10 chr4 33902557 33903670 -121726450 + L1_Mus2 LINE L1 964 2069 -3814 6 843 234 0 0 0 chr4 33903670 33903696 -121726424 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 843 31872 100 7 2 chr4 33903696 33908162 -121721958 + L1_Mus2 LINE L1 2070 6564 -2 6 843 217 0 29 29 chr4 33908193 33908227 -121721893 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 843 225 244 0 0 chr4 33908396 33908441 -121721679 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 843 369 0 0 0 chr4 33909170 33909211 -121720909 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 843 2378 214 10 155 chr4 33909223 33909938 -121720182 - RMER19C LTR ERVK 0 611 1 6 843 241 283 0 0 chr4 33912075 33912135 -121717985 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 843 542 226 34 34 chr4 33912324 33912443 -121717677 - PB1D7 SINE Alu -1 119 1 6 843 2040 189 55 71 chr4 33915578 33915691 -121714429 + MTD LTR MaLR 5 118 -301 6 843 219 0 118 0 chr4 33915691 33915742 -121714378 + (ATTG)n Simple_repeat Simple_repeat 3 59 0 6 843 2040 189 55 71 chr4 33915742 33916004 -121714116 + MTD LTR MaLR 119 387 -32 6 843 1271 48 7 0 chr4 33916004 33916150 -121713970 - B1_Mm SINE Alu 0 147 1 6 843 2040 189 55 71 chr4 33916150 33916194 -121713926 + MTD LTR MaLR 388 416 -3 6 843 719 206 65 25 chr4 33916196 33916429 -121713691 + MTD-int LTR MaLR 14 248 -850 6 843 311 167 0 0 chr4 33916432 33916480 -121713640 - MurSatRep1 Unknown Unknown -1862 275 228 6 843 2257 138 63 0 chr4 33916484 33916847 -121713273 - ORR1B1 LTR MaLR -8 386 1 6 843 529 147 30 40 chr4 33916847 33916946 -121713174 + B1_Mur4 SINE Alu 53 150 0 6 843 189 0 0 0 chr4 33916946 33916967 -121713153 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 843 2378 227 94 50 chr4 33916974 33917721 -121712399 + MTD-int LTR MaLR 304 1083 -175 6 843 398 280 112 57 chr4 33917729 33918043 -121712077 - Lx9 LINE L1 0 7644 7314 6 843 250 274 123 0 chr4 33918115 33918188 -121711932 - Lx9 LINE L1 -451 7193 7112 6 843 502 193 53 58 chr4 33918191 33918362 -121711758 + MTD-int LTR MaLR 1037 1206 -52 6 843 1439 191 220 3 chr4 33918378 33918715 -121711405 + MTD LTR MaLR 10 419 0 6 843 21 36 0 0 chr4 33919006 33919034 -121711086 + AT_rich Low_complexity Low_complexity 1 28 0 6 843 453 132 62 0 chr4 33919509 33919653 -121710467 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 6 843 24 0 0 0 chr4 33920944 33920968 -121709152 + AT_rich Low_complexity Low_complexity 1 24 0 6 843 6285 68 20 4 chr4 33922591 33923625 -121706495 - Lx3_Mus LINE L1 -881 6128 5083 6 843 2780 81 59 13 chr4 33923625 33924012 -121706108 + Lx3_Mus LINE L1 6605 7009 0 6 843 3272 26 77 21 chr4 33924702 33925091 -121705029 + IAPLTR2a LTR ERVK 1 411 0 6 843 404 261 98 98 chr4 33926227 33926244 -121703876 - B2_Mm2 SINE B2 -18 177 160 6 843 318 50 0 0 chr4 33926244 33926284 -121703836 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 843 495 0 0 0 chr4 33926284 33926338 -121703782 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 843 601 316 7 0 chr4 33926338 33926493 -121703627 - B3A SINE B2 -39 159 4 7 843 225 244 149 11 chr4 33927835 33927922 -121702198 - L1MC4 LINE L1 -205 7837 7739 7 843 1436 143 4 39 chr4 33927944 33928177 -121701943 + URR1B DNA MER1_type 1 225 0 7 843 948 294 26 45 chr4 33928185 33928576 -121701544 + Lx8 LINE L1 6845 7219 -254 7 843 33 0 0 0 chr4 33928741 33928774 -121701346 + AT_rich Low_complexity Low_complexity 1 33 0 7 843 233 57 0 28 chr4 33930973 33931009 -121699111 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 7 843 266 294 84 71 chr4 33931161 33931315 -121698805 + MER5B DNA MER1_type 2 157 -21 7 843 325 288 71 95 chr4 33931812 33932023 -121698097 + MER20 DNA MER1_type 1 206 -13 7 843 378 0 0 0 chr4 33932303 33932345 -121697775 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 843 497 68 14 0 chr4 33932346 33932420 -121697700 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 843 297 0 0 0 chr4 33932792 33932825 -121697295 + (T)n Simple_repeat Simple_repeat 1 33 0 7 843 25 75 0 0 chr4 33934062 33934115 -121696005 + AT_rich Low_complexity Low_complexity 1 53 0 7 843 22 35 0 0 chr4 33934461 33934490 -121695630 + AT_rich Low_complexity Low_complexity 1 29 0 7 843 234 105 0 0 chr4 33934494 33934532 -121695588 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 843 467 242 217 8 chr4 33934537 33934666 -121695454 - B3A SINE B2 -38 160 5 7 843 227 334 50 8 chr4 33935301 33935423 -121694697 - L1M5 LINE L1 -1082 5064 4938 7 843 408 281 5 18 chr4 33938218 33938329 -121691791 + B1F SINE Alu 12 120 0 7 843 288 0 0 0 chr4 33938980 33939012 -121691108 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 843 299 284 14 185 chr4 33939033 33939178 -121690942 - MTE-int LTR MaLR -1091 489 379 7 843 1313 41 0 0 chr4 33939178 33939323 -121690797 - B1_Mm SINE Alu 0 147 3 7 843 299 284 14 185 chr4 33939323 33939393 -121690727 - MTE-int LTR MaLR -1202 378 311 7 843 488 293 36 24 chr4 33942603 33942771 -121687349 - Lx8 LINE L1 -1099 6374 6205 7 843 513 47 0 0 chr4 33942773 33942837 -121687283 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 843 406 296 45 18 chr4 33942958 33943068 -121687052 - MLT1J1 LTR MaLR -127 317 205 7 843 6458 167 62 36 chr4 33943610 33945446 -121684674 - L1Md_A LINE L1 -3721 2162 273 7 843 270 224 13 13 chr4 33945455 33945532 -121684588 + L1Md_F LINE L1 647 723 -5796 7 843 208 282 24 0 chr4 33945610 33945734 -121684386 + (TA)n Simple_repeat Simple_repeat 2 128 0 7 843 304 222 11 22 chr4 33945611 33945703 -121684417 + (TAAA)n Simple_repeat Simple_repeat 4 94 0 7 843 258 30 0 0 chr4 33945929 33945944 -121684176 + (CA)n Simple_repeat Simple_repeat 2 16 0 7 843 315 0 0 0 chr4 33945944 33945979 -121684141 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 843 258 30 0 0 chr4 33945979 33945996 -121684124 + (CA)n Simple_repeat Simple_repeat 1 17 0 7 843 560 332 51 27 chr4 33946044 33946301 -121683819 + B4A SINE B4 27 289 -3 7 843 1082 283 25 21 chr4 33946353 33946635 -121683485 - MTE2b LTR MaLR -45 334 52 7 843 318 26 0 0 chr4 33947353 33947392 -121682728 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 844 6880 152 69 22 chr4 33948114 33949529 -121680591 + Lx5 LINE L1 5393 6899 -151 7 844 264 111 0 0 chr4 33949529 33949574 -121680546 + (TGG)n Simple_repeat Simple_repeat 3 47 0 7 844 6880 165 83 21 chr4 33949574 33949639 -121680481 + Lx5 LINE L1 6900 6973 -77 7 844 2811 216 84 29 chr4 33950677 33951362 -121678758 + Lx9 LINE L1 6576 7439 -205 7 844 4032 234 109 57 chr4 33951354 33951883 -121678237 + Lx9 LINE L1 4330 4823 -1024 7 844 414 0 0 0 chr4 33951883 33951929 -121678191 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 844 291 114 0 0 chr4 33951932 33951976 -121678144 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 844 4032 240 105 53 chr4 33951976 33953007 -121677113 + Lx9 LINE L1 4824 6007 -1637 7 844 225 267 79 29 chr4 33953023 33953162 -121676958 + Lx9 LINE L1 6139 6284 -1360 7 844 1802 311 82 52 chr4 33953246 33954156 -121675964 - MTE-int LTR MaLR -626 954 2 7 844 285 153 0 0 chr4 33954183 33954255 -121675865 + A-rich Low_complexity Low_complexity 8 79 0 7 844 1226 289 16 13 chr4 33954255 33954564 -121675556 - MTE2b LTR MaLR -42 337 28 7 844 662 149 27 0 chr4 33954644 33954792 -121675328 + GA-rich Low_complexity Low_complexity 2 153 0 7 844 300 294 154 0 chr4 33955033 33955169 -121674951 + MER3 DNA MER1_type 27 183 -26 7 844 666 228 0 55 chr4 33955440 33955621 -121674499 + B3A SINE B2 13 183 -15 7 844 339 227 3 13 chr4 33955748 33955836 -121674284 + MLT1B LTR MaLR 309 385 -5 7 844 24 67 0 0 chr4 33955867 33955912 -121674208 + AT_rich Low_complexity Low_complexity 1 45 0 7 844 333 47 0 0 chr4 33957114 33957157 -121672963 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 844 795 169 0 0 chr4 33957184 33957361 -121672759 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 844 1041 301 67 25 chr4 33957851 33958332 -121671788 - L1MA4A LINE L1 -382 5921 5421 7 844 1745 185 97 0 chr4 33958352 33958703 -121671417 + MTD LTR MaLR 22 406 -13 7 844 1151 294 42 21 chr4 33958706 33959231 -121670889 - L1MA4A LINE L1 -825 5321 4794 7 844 256 267 31 55 chr4 33959475 33959602 -121670518 - L1_Mur3 LINE L1 -1663 4217 4094 7 844 1091 293 169 2 chr4 33959599 33960067 -121670053 - Lx9 LINE L1 -781 6863 6318 7 844 6244 238 61 43 chr4 33960098 33962254 -121667866 - Lx9 LINE L1 -1527 6117 3885 7 844 725 251 41 55 chr4 33962254 33962609 -121667511 + RLTR11A2 LTR ERVK 1 286 -167 7 844 286 296 37 80 chr4 33962610 33962751 -121667369 + RLTR11A2 LTR ERVK 242 434 -94 7 844 2455 244 64 49 chr4 33962833 33963692 -121666428 - Lx9 LINE L1 -1960 3887 3016 7 844 629 190 6 30 chr4 33963726 33963894 -121666226 - Lx4B LINE L1 -2 7056 6893 7 844 240 219 26 40 chr4 33963885 33963961 -121666159 - Lx9 LINE L1 -2814 3033 2959 7 844 260 294 19 10 chr4 33963974 33964077 -121666043 - L1_Mur3 LINE L1 -3599 2281 2178 7 844 305 325 40 147 chr4 33964129 33964306 -121665814 - RSINE1 SINE B4 -3 162 5 7 844 709 346 5 0 chr4 33964563 33964774 -121665346 - B3 SINE B2 0 216 5 7 844 1012 313 77 46 chr4 33964778 33965722 -121664398 - L1M2 LINE L1 -3869 2680 1664 7 844 543 66 0 0 chr4 33965831 33965907 -121664213 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 844 238 280 13 13 chr4 33966325 33966401 -121663719 + GA-rich Low_complexity Low_complexity 4 79 0 7 844 219 36 0 0 chr4 33966747 33966775 -121663345 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 844 471 372 44 31 chr4 33966922 33967216 -121662904 - MLT1I LTR MaLR 0 411 114 7 844 1216 298 20 29 chr4 33967211 33967601 -121662519 - Tigger7 DNA MER2_type -2144 347 1 7 844 2825 162 31 8 chr4 33968317 33968828 -121661292 + RLTR28 LTR ERVL 2 524 0 7 844 321 256 23 86 chr4 33969024 33969153 -121660967 + MTD LTR MaLR 63 180 -239 7 844 375 263 0 0 chr4 33969154 33969248 -121660872 + MTD-int LTR MaLR 229 322 -936 7 844 4082 166 23 83 chr4 33969248 33970076 -121660044 + RLTR25B LTR ERVK 1 778 -250 7 844 712 184 22 14 chr4 33970310 33970448 -121659672 + RLTR25B LTR ERVK 890 1028 0 7 844 3032 218 28 126 chr4 33970449 33971388 -121658732 + MTD-int LTR MaLR 406 1252 -6 7 844 1965 199 22 32 chr4 33971363 33971769 -121658351 + MTD LTR MaLR 10 411 -8 7 844 893 291 125 15 chr4 33972093 33972484 -121657636 + Lx8 LINE L1 7040 7473 0 7 844 498 33 0 0 chr4 33973581 33973641 -121656479 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 844 378 0 0 0 chr4 33973641 33973682 -121656438 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 844 6184 181 89 10 chr4 33973683 33974012 -121656108 - Lx9 LINE L1 -8 7636 7292 7 844 225 0 0 0 chr4 33974012 33974037 -121656083 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 7 844 6184 181 89 10 chr4 33974037 33974731 -121655389 - Lx9 LINE L1 -353 7291 6518 7 844 222 37 0 0 chr4 33974731 33974758 -121655362 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7 844 6184 181 89 10 chr4 33974758 33974966 -121655154 - Lx9 LINE L1 -1127 6517 6309 7 844 962 253 5 0 chr4 33975346 33975532 -121654588 + B3 SINE B2 2 188 -28 7 844 423 0 0 0 chr4 33975532 33975579 -121654541 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 844 249 33 0 0 chr4 33976562 33976592 -121653528 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 844 394 324 0 10 chr4 33976598 33976701 -121653419 - PB1D7 SINE Alu -17 103 2 7 844 1912 179 92 46 chr4 33977769 33978162 -121651958 - MTC LTR MaLR -8 413 3 7 844 31 0 0 0 chr4 33978191 33978222 -121651898 + AT_rich Low_complexity Low_complexity 1 31 0 7 844 678 286 78 44 chr4 33979139 33979523 -121650597 + L5 LINE RTE 1858 2254 -11 7 844 426 20 0 0 chr4 33979773 33979824 -121650296 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 844 242 286 13 67 chr4 33979824 33979899 -121650221 - ID2 SINE ID -10 73 3 7 844 228 193 115 0 chr4 33979913 33979990 -121650130 - B1F2 SINE Alu -15 105 12 7 844 342 301 43 17 chr4 33980311 33980426 -121649694 + RSINE1 SINE B4 2 119 -46 7 844 423 0 0 0 chr4 33980427 33980474 -121649646 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 844 21 0 0 0 chr4 33980474 33980495 -121649625 + AT_rich Low_complexity Low_complexity 1 21 0 7 844 197 331 150 38 chr4 33980674 33980834 -121649286 + MIRb SINE MIR 91 268 0 7 844 205 311 127 52 chr4 33980839 33981012 -121649108 - L2b LINE L2 -296 3130 2945 7 844 319 355 42 0 chr4 33981035 33981201 -121648919 - L2b LINE L2 -2146 1273 1101 7 844 281 286 101 0 chr4 33981719 33981838 -121648282 - Lx7 LINE L1 -1 7695 7565 7 844 522 0 0 0 chr4 33981883 33981941 -121648179 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 844 1933 271 55 14 chr4 33981990 33982552 -121647568 - Lx7 LINE L1 -388 7308 6724 7 844 450 0 0 0 chr4 33983307 33983357 -121646763 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 844 867 83 0 0 chr4 33983619 33983728 -121646392 - L1Md_F2 LINE L1 -444 6138 6030 7 844 3737 30 0 9 chr4 33983729 33984159 -121645961 + L1Md_F2 LINE L1 6155 6580 -2 7 844 873 284 68 12 chr4 33984352 33984601 -121645519 + B4 SINE B4 1 263 -29 7 844 363 235 59 30 chr4 33985711 33985812 -121644308 + MTEb LTR MaLR 275 378 -1 7 844 2153 146 9 86 chr4 33986551 33986984 -121643136 + MTB_Mm LTR MaLR 8 407 0 7 844 200 100 25 0 chr4 33987240 33987280 -121642840 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 7 844 510 253 44 154 chr4 33987419 33987601 -121642519 + RSINE1 SINE B4 4 165 0 7 844 472 143 305 0 chr4 33988001 33988106 -121642014 - B1_Mus1 SINE Alu -10 138 2 7 844 243 0 0 0 chr4 33989070 33989097 -121641023 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 844 3176 57 42 3 chr4 33989177 33989562 -121640558 - MTB LTR MaLR 0 400 1 7 844 1077 75 14 7 chr4 33989778 33989925 -121640195 + B1_Mus1 SINE Alu 1 148 0 8 844 2630 157 140 23 chr4 33990058 33990573 -121639547 + RMER15 LTR ERVL 1 575 0 8 844 423 56 0 0 chr4 33990586 33990640 -121639480 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 844 216 212 29 29 chr4 33990649 33990717 -121639403 + (CAGA)n Simple_repeat Simple_repeat 2 69 0 8 844 261 0 0 0 chr4 33992511 33992540 -121637580 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 844 284 113 0 36 chr4 33992854 33992909 -121637211 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 8 844 365 295 57 9 chr4 33994090 33994196 -121635924 + PB1D10 SINE Alu 2 112 -5 8 844 232 305 10 78 chr4 33994334 33994437 -121635683 - Kanga1a DNA Tc2 0 754 659 8 844 3623 241 94 20 chr4 33994479 33995224 -121634896 - RMER1A Other Other 0 1030 214 8 844 441 0 0 0 chr4 33995224 33995273 -121634847 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 844 3623 241 94 20 chr4 33995273 33995486 -121634634 - RMER1A Other Other -817 213 1 8 844 623 264 104 6 chr4 33995490 33995673 -121634447 - RMER1A Other Other -784 246 46 8 844 360 0 0 0 chr4 33995675 33995715 -121634405 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 8 844 594 271 179 67 chr4 33996398 33996817 -121633303 - MER31B LTR ERV1 0 466 1 8 844 272 230 12 108 chr4 33998499 33998582 -121631538 + MER34A LTR ERV1 478 552 -19 8 844 2729 85 0 0 chr4 34001991 34002355 -121627765 + L1_Mm LINE L1 4460 4823 -1060 1 844 201 324 15 0 chr4 34002512 34002580 -121627540 + L2c LINE L2 3266 3334 -53 2 844 266 288 0 0 chr4 34003142 34003201 -121626919 + RSINE1 SINE B4 77 135 -30 3 844 504 0 0 0 chr4 34003208 34003264 -121626856 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 844 328 115 10 15 chr4 34003286 34003362 -121626758 + B2_Mm2 SINE B2 1 75 -118 5 844 725 115 8 18 chr4 34003404 34003543 -121626577 + B2_Mm2 SINE B2 45 187 -6 5 844 195 162 0 0 chr4 34004964 34005001 -121625119 + CT-rich Low_complexity Low_complexity 1 37 0 6 844 269 308 169 17 chr4 34005570 34005742 -121624378 - MLT1A0 LTR MaLR -167 198 1 7 844 1822 186 30 24 chr4 34006528 34006897 -121623223 + ORR1D1 LTR MaLR 1 371 -3 8 844 261 0 0 0 chr4 34007326 34007355 -121622765 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 9 844 344 77 0 19 chr4 34007359 34007412 -121622708 + (GGGAGA)n Simple_repeat Simple_repeat 2 53 0 1 844 1124 79 6 22 chr4 34007417 34007598 -121622522 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 1 844 180 0 0 0 chr4 34007600 34007620 -121622500 + (GGAAA)n Simple_repeat Simple_repeat 1 20 0 1 844 333 0 0 0 chr4 34008210 34008247 -121621873 + (T)n Simple_repeat Simple_repeat 1 37 0 1 844 356 0 23 0 chr4 34009325 34009369 -121620751 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1 844 21 0 0 0 chr4 34011476 34011497 -121618623 + GC_rich Low_complexity Low_complexity 1 21 0 1 844 222 128 0 0 chr4 34011868 34011907 -121618213 + (CCCCG)n Simple_repeat Simple_repeat 4 42 0 1 844 288 0 0 0 chr4 34013669 34013701 -121616419 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1 844 252 287 174 7 chr4 34018645 34018789 -121611331 - MER5A DNA MER1_type 0 189 22 1 844 23 0 0 0 chr4 34019222 34019245 -121610875 + AT_rich Low_complexity Low_complexity 1 23 0 1 844 21 0 0 0 chr4 34019656 34019677 -121610443 + AT_rich Low_complexity Low_complexity 1 21 0 2 844 519 17 0 0 chr4 34021433 34021493 -121608627 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 844 522 113 0 0 chr4 34021491 34021588 -121608532 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 2 844 181 250 62 15 chr4 34021669 34021734 -121608386 + MIRc SINE MIR 92 159 -109 2 844 266 0 29 0 chr4 34022727 34022761 -121607359 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 844 339 25 0 0 chr4 34022761 34022800 -121607320 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 844 307 297 51 59 chr4 34023755 34023873 -121606247 - PB1D10 SINE Alu 0 117 1 2 844 237 280 120 56 chr4 34025427 34025552 -121604568 - MIRb SINE MIR -17 251 119 2 844 199 309 207 12 chr4 34025806 34025970 -121604150 + MIR SINE MIR 47 242 -20 2 844 216 0 0 0 chr4 34026374 34026398 -121603722 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 844 180 0 0 0 chr4 34032471 34032491 -121597629 + (T)n Simple_repeat Simple_repeat 1 20 0 3 844 297 140 0 0 chr4 34033074 34033131 -121596989 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 844 4104 195 19 10 chr4 34035871 34036592 -121593528 - Lx5 LINE L1 -166 6884 6157 3 844 377 330 0 0 chr4 34037281 34037384 -121592736 - PB1D10 SINE Alu -8 109 7 3 844 504 105 0 0 chr4 34037637 34037713 -121592407 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 844 321 87 0 0 chr4 34037718 34037764 -121592356 + HAL1-3A_ME LINE L1 1976 2021 -837 3 844 1214 277 33 22 chr4 34037814 34038179 -121591941 - MTE2b LTR MaLR -10 369 1 3 844 254 200 67 0 chr4 34038777 34038837 -121591283 - MIRb SINE MIR -65 203 140 3 844 191 114 0 28 chr4 34040323 34040359 -121589761 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 3 844 182 37 0 36 chr4 34042084 34042096 -121588024 + (TC)n Simple_repeat Simple_repeat 1 12 0 3 844 1395 11 0 33 chr4 34042096 34042280 -121587840 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 4 844 182 37 0 36 chr4 34042280 34042295 -121587825 + (TC)n Simple_repeat Simple_repeat 2 16 0 4 844 6567 55 0 0 chr4 34042457 34043255 -121586865 + L1Md_F2 LINE L1 4789 5586 -297 4 844 8203 51 1 0 chr4 34043256 34044249 -121585871 + L1Md_F2 LINE L1 5588 6581 -1 4 844 212 262 0 0 chr4 34045759 34045801 -121584319 + (CATA)n Simple_repeat Simple_repeat 2 43 0 4 844 460 297 28 33 chr4 34045831 34046012 -121584108 - B3A SINE B2 -17 181 2 4 844 1710 177 31 60 chr4 34047353 34047532 -121582588 - ORR1D1 LTR MaLR 0 374 194 4 844 414 0 0 0 chr4 34047532 34047578 -121582542 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 844 1710 177 31 60 chr4 34047578 34047783 -121582337 - ORR1D1 LTR MaLR -181 193 1 4 844 202 291 184 11 chr4 34047936 34048023 -121582097 + MIR SINE MIR 25 126 -136 4 844 647 288 114 59 chr4 34048128 34048417 -121581703 + B4A SINE B4 1 280 -12 4 844 354 23 0 0 chr4 34048421 34048464 -121581656 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 844 210 376 0 52 chr4 34050217 34050332 -121579788 - MIRb SINE MIR -131 137 29 5 844 1245 96 0 0 chr4 34051108 34051286 -121578834 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 844 598 227 62 8 chr4 34052045 34052174 -121577946 - B1_Mur2 SINE Alu -8 141 6 5 844 2299 219 136 77 chr4 34052966 34053812 -121576308 + RMER19B LTR ERVK 1 896 -6 5 844 315 286 0 10 chr4 34053812 34053911 -121576209 - MLT1A1 LTR MaLR -13 395 298 5 844 29 0 0 0 chr4 34054058 34054087 -121576033 + AT_rich Low_complexity Low_complexity 1 29 0 5 844 1185 294 122 34 chr4 34054362 34054893 -121575227 - MER21B LTR ERV1 -11 852 275 5 844 777 286 75 20 chr4 34057473 34057766 -121572354 + RMER5 LTR ERV1 49 357 -177 5 844 3497 168 146 68 chr4 34058189 34059026 -121571094 + RMER19B LTR ERVK 1 902 0 5 844 796 254 21 0 chr4 34059272 34059465 -121570655 + RMER5 LTR ERV1 338 534 0 5 844 213 316 176 17 chr4 34059477 34059596 -121570524 - MIR SINE MIR -123 139 2 5 844 1012 80 66 0 chr4 34059704 34059841 -121570279 - B1_Mus2 SINE Alu 0 147 2 6 844 333 0 0 0 chr4 34060178 34060215 -121569905 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 844 284 236 27 14 chr4 34060996 34061069 -121569051 - RMER15 LTR ERVL -100 475 402 6 844 711 216 155 42 chr4 34061395 34061588 -121568532 + B3 SINE B2 1 215 -1 6 844 272 278 0 40 chr4 34063006 34063035 -121567085 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 844 644 0 86 0 chr4 34063035 34063151 -121566969 + (GA)n Simple_repeat Simple_repeat 1 126 0 6 844 272 278 0 40 chr4 34063151 34063222 -121566898 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 844 366 80 0 0 chr4 34063226 34063276 -121566844 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 844 485 101 22 0 chr4 34063393 34063482 -121566638 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 6 844 871 85 138 0 chr4 34063660 34063790 -121566330 - B1_Mus1 SINE Alu 0 148 1 6 844 200 34 0 33 chr4 34063805 34063835 -121566285 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 844 1114 80 0 0 chr4 34063835 34063973 -121566147 - B1_Mus1 SINE Alu -9 139 2 7 844 362 21 21 0 chr4 34065072 34065119 -121565001 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 844 275 318 0 15 chr4 34065300 34065367 -121564753 + RLTR18B LTR ERVK 124 189 -323 7 844 269 157 35 69 chr4 34065401 34065545 -121564575 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 7 844 331 339 66 33 chr4 34066359 34066542 -121563578 + Tigger5 DNA MER2_type 2217 2405 -1 7 844 384 22 0 0 chr4 34066544 34066589 -121563531 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 844 234 91 0 0 chr4 34066666 34066699 -121563421 + (A)n Simple_repeat Simple_repeat 1 33 0 7 844 1877 190 104 69 chr4 34066708 34067217 -121562903 - RLTR31_Mur LTR ERVK -26 527 1 7 844 1070 266 90 55 chr4 34067219 34067565 -121562555 - MTD LTR MaLR -57 362 5 7 844 264 350 102 45 chr4 34067570 34067884 -121562236 + ORR1D2 LTR MaLR 24 355 -15 8 844 464 322 133 37 chr4 34069162 34069462 -121560658 + L2a LINE L2 3097 3425 -1 8 844 271 315 84 8 chr4 34069535 34069666 -121560454 - MIRb SINE MIR -106 162 22 8 844 21 0 0 0 chr4 34070249 34070270 -121559850 + AT_rich Low_complexity Low_complexity 1 21 0 8 844 433 346 56 0 chr4 34070510 34070689 -121559431 - L1ME3B LINE L1 -376 5864 5676 8 844 2474 107 52 68 chr4 34070693 34071177 -121558943 + RLTR45 LTR ERVK 1 476 -6 8 844 315 259 105 18 chr4 34071304 34071418 -121558702 - LTR16C LTR ERVL -60 429 306 8 844 361 365 70 57 chr4 34072122 34072453 -121557667 - LTR16C LTR ERVL -143 346 12 8 844 327 328 27 49 chr4 34072508 34072691 -121557429 - L1ME3B LINE L1 -649 5524 5346 8 844 355 333 130 5 chr4 34072709 34072917 -121557203 - L1ME3B LINE L1 -847 5299 5066 8 844 24 0 0 0 chr4 34073011 34073035 -121557085 + AT_rich Low_complexity Low_complexity 1 24 0 8 844 316 291 163 0 chr4 34073121 34073293 -121556827 + Tigger14a DNA MER2_type 51 250 -74 8 844 187 259 69 0 chr4 34073371 34073429 -121556691 - L3 LINE CR1 -3316 1173 1112 8 844 22 56 0 0 chr4 34073862 34073898 -121556222 + AT_rich Low_complexity Low_complexity 1 36 0 9 844 630 309 119 26 chr4 34075543 34075998 -121554122 + Lx8 LINE L1 6969 7465 -8 9 844 407 307 106 28 chr4 34076253 34076436 -121553684 + MIRb SINE MIR 13 206 -62 9 844 237 222 0 0 chr4 34076772 34076835 -121553285 + (ATG)n Simple_repeat Simple_repeat 3 65 0 9 844 1510 271 48 8 chr4 34077163 34077751 -121552369 - L1_Rod LINE L1 -3582 2561 1942 9 844 990 268 62 50 chr4 34077800 34078535 -121551585 - L1_Rod LINE L1 -4208 1639 901 9 105 399 321 52 64 chr4 34078710 34078913 -121551207 - B4A SINE B4 -48 244 5 9 845 22 0 0 0 chr4 34079953 34079975 -121550145 + GC_rich Low_complexity Low_complexity 1 22 0 9 845 288 0 0 0 chr4 34082151 34082183 -121547937 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 845 339 25 0 0 chr4 34083180 34083220 -121546900 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 845 433 285 0 0 chr4 34083648 34083785 -121546335 - L1_Mur3 LINE L1 -2347 3533 3397 9 845 471 299 127 105 chr4 34084229 34084591 -121545529 + ORR1D2 LTR MaLR 1 370 0 1 845 1213 62 0 0 chr4 34085290 34085436 -121544684 + B1_Mus2 SINE Alu 2 147 0 1 845 3550 281 76 50 chr4 34085608 34088149 -121541971 - Lx8 LINE L1 -201 7272 4630 1 845 1370 232 62 25 chr4 34088149 34088502 -121541618 - ORR1D2 LTR MaLR -4 366 1 1 845 3532 283 88 72 chr4 34088502 34088857 -121541263 - Lx8 LINE L1 -1251 4629 4299 1 845 3318 40 2 0 chr4 34088857 34089252 -121540868 + MTA_Mm LTR MaLR 1 396 0 1 845 3532 283 88 72 chr4 34089252 34090231 -121539889 - Lx8 LINE L1 -1582 4298 3334 1 845 252 0 0 0 chr4 34090231 34090259 -121539861 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 845 1207 50 0 0 chr4 34090260 34090401 -121539719 - B1_Mm SINE Alu -6 141 1 1 845 3532 283 88 72 chr4 34090401 34091204 -121538916 - Lx8 LINE L1 -2547 3333 2494 1 845 325 386 49 31 chr4 34091317 34091929 -121538191 - Lx8 LINE L1 -19 7454 6832 1 845 358 227 48 0 chr4 34091992 34092116 -121538004 - Lx8 LINE L1 -3436 2411 2264 1 845 298 136 73 41 chr4 34092131 34092254 -121537866 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 845 206 154 73 49 chr4 34092285 34092367 -121537753 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 1 845 277 265 24 0 chr4 34092416 34092499 -121537621 - Lx8 LINE L1 -3565 2282 2198 1 845 22 56 0 0 chr4 34092499 34092535 -121537585 + AT_rich Low_complexity Low_complexity 1 36 0 1 845 489 316 7 66 chr4 34092855 34093157 -121536963 - L1M3 LINE L1 -1979 4161 3878 1 845 3393 30 2 0 chr4 34093867 34094262 -121535858 - MTA_Mm LTR MaLR 0 396 1 1 845 9302 21 13 0 chr4 34094262 34095346 -121534774 - MTA_Mm-int LTR MaLR 0 1098 1 1 845 3353 35 2 2 chr4 34095346 34095742 -121534378 - MTA_Mm LTR MaLR 0 396 1 1 845 339 371 7 20 chr4 34096398 34096544 -121533576 - ORR1E LTR MaLR -210 149 6 1 845 920 253 149 13 chr4 34097207 34097515 -121532605 + ORR1D2 LTR MaLR 10 359 -11 1 845 4169 220 74 90 chr4 34097514 34098825 -121531295 + ORR1D2-int LTR MaLR 21 1310 -60 1 845 6147 203 39 71 chr4 34099091 34100701 -121529419 - Lx7 LINE L1 0 7696 6139 1 845 358 200 25 0 chr4 34100703 34100783 -121529337 + ORR1D2-int LTR MaLR 1285 1366 -4 1 845 1194 238 55 86 chr4 34100787 34101169 -121528951 + ORR1D2 LTR MaLR 1 370 0 1 845 1707 218 33 16 chr4 34101452 34101820 -121528300 + ORR1D1 LTR MaLR 1 374 0 1 845 22 0 0 0 chr4 34102121 34102143 -121527977 + AT_rich Low_complexity Low_complexity 1 22 0 1 845 14946 53 3 4 chr4 34102348 34104624 -121525496 + L1Md_F2 LINE L1 3890 6161 -421 1 845 4135 87 17 12 chr4 34104625 34105199 -121524921 + L1Md_F2 LINE L1 6006 6582 0 1 845 237 317 111 65 chr4 34106486 34106594 -121523526 + LTR89 LTR ERVL? 765 877 -2 1 845 180 250 122 27 chr4 34106702 34106776 -121523344 + MIRm SINE MIR 149 229 -47 1 845 222 37 0 0 chr4 34107834 34107861 -121522259 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 845 746 246 154 15 chr4 34108578 34108838 -121521282 - Lx8 LINE L1 -374 7099 6804 1 845 4671 109 18 3 chr4 34109035 34109718 -121520402 - Lx3_Mus LINE L1 -1 7008 6316 1 845 21 0 0 0 chr4 34110431 34110452 -121519668 + AT_rich Low_complexity Low_complexity 1 21 0 1 845 414 0 0 0 chr4 34111177 34111223 -121518897 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 845 1065 196 30 22 chr4 34112791 34113021 -121517099 + RLTR40 LTR ERVK 566 797 -20 1 845 685 248 107 31 chr4 34113154 34113379 -121516741 - ORR1E LTR MaLR -6 353 112 1 845 249 229 115 0 chr4 34114862 34114923 -121515197 + MIR SINE MIR 194 261 -1 1 845 234 232 84 0 chr4 34116239 34116334 -121513786 - L1M5 LINE L1 -758 5686 5584 1 845 334 360 66 27 chr4 34116397 34116655 -121513465 - L1M5 LINE L1 -938 5208 4941 1 845 297 286 97 29 chr4 34117472 34117665 -121512455 - MLT1B LTR MaLR -11 494 289 1 845 844 91 23 11 chr4 34117982 34118159 -121511961 + (TC)n Simple_repeat Simple_repeat 1 179 0 1 845 308 148 16 0 chr4 34118167 34118228 -121511892 + CT-rich Low_complexity Low_complexity 3 64 0 1 845 31234 72 5 11 chr4 34118251 34123215 -121506905 + L1Md_F2 LINE L1 245 5586 -297 1 845 7766 61 3 7 chr4 34123216 34124213 -121505907 + L1Md_F2 LINE L1 5588 6580 -2 1 845 2661 99 56 0 chr4 34124250 34124624 -121505496 - L1_Mus2 LINE L1 -1 6565 6171 1 845 1206 190 276 17 chr4 34124817 34125216 -121504904 + MT2A LTR ERVL 1 594 -7 1 845 607 217 61 23 chr4 34125454 34125586 -121504534 + B1_Mus2 SINE Alu 1 137 -10 1 845 441 0 0 0 chr4 34125587 34125636 -121504484 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 845 195 42 0 0 chr4 34125645 34125669 -121504451 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 845 775 197 60 22 chr4 34125844 34126026 -121504094 - B2_Mm2 SINE B2 -6 189 1 1 845 306 286 21 21 chr4 34126081 34126174 -121503946 + MER5A DNA MER1_type 90 182 -7 1 845 1077 234 47 20 chr4 34126603 34126901 -121503219 + MTD LTR MaLR 1 332 -75 1 845 3020 88 0 10 chr4 34126901 34127301 -121502819 + MTA_Mm LTR MaLR 1 396 0 1 845 635 289 155 69 chr4 34127301 34127377 -121502743 + MTD LTR MaLR 333 407 0 1 845 279 0 0 0 chr4 34128046 34128077 -121502043 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 845 222 350 64 16 chr4 34128123 34128248 -121501872 - MIR3 SINE MIR -52 156 26 1 845 21 36 0 0 chr4 34128791 34128819 -121501301 + AT_rich Low_complexity Low_complexity 1 28 0 1 845 234 326 129 11 chr4 34129819 34129912 -121500208 - MER5A1 DNA MER1_type -22 144 41 1 845 348 284 62 27 chr4 34130151 34130263 -121499857 + L1MB5 LINE L1 5977 6092 -82 1 845 639 181 13 6 chr4 34131789 34131945 -121498175 + (TA)n Simple_repeat Simple_repeat 2 158 0 1 845 333 244 77 11 chr4 34132040 34132131 -121497989 - PB1D10 SINE Alu -18 99 3 1 845 217 252 29 144 chr4 34132273 34132412 -121497708 + MIRc SINE MIR 22 144 -124 1 845 1168 44 0 0 chr4 34132423 34132560 -121497560 + B1_Mus2 SINE Alu 2 138 -9 1 845 327 25 0 0 chr4 34132560 34132600 -121497520 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 845 284 326 29 57 chr4 34133047 34133187 -121496933 + MIR3 SINE MIR 63 198 -10 1 845 197 295 254 25 chr4 34133322 34133562 -121496558 + L3 LINE CR1 3471 3765 -724 1 845 250 286 78 0 chr4 34133850 34133927 -121496193 - ID4_ SINE ID 0 83 1 1 845 452 287 51 7 chr4 34133936 34134073 -121496047 - B1F1 SINE Alu 0 149 7 1 845 2012 258 137 77 chr4 34134086 34135365 -121494755 + Looper DNA PiggyBac 147 1502 -56 1 845 233 338 0 24 chr4 34135492 34135574 -121494546 - Charlie4z DNA MER1_type -65 102 23 1 845 396 0 0 0 chr4 34136401 34136445 -121493675 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 845 2157 144 28 8 chr4 34138229 34138585 -121491535 - ORR1B2 LTR MaLR 0 367 5 1 845 5032 204 45 30 chr4 34138600 34139845 -121490275 - Lx2B LINE L1 -4 6996 5733 1 845 21014 163 17 10 chr4 34139835 34144302 -121485818 - Lx2B LINE L1 -578 5308 802 1 845 217 302 0 0 chr4 34145345 34145398 -121484722 - ID2 SINE ID -8 75 23 1 845 320 304 43 17 chr4 34145659 34145776 -121484344 + MTD LTR MaLR 1 120 -299 1 845 1522 219 16 89 chr4 34145822 34145917 -121484203 - Lx7 LINE L1 -569 7127 7046 1 845 4283 124 9 9 chr4 34145917 34146568 -121483552 + Lx2 LINE L1 6346 6996 -1 1 845 1522 219 16 89 chr4 34146568 34146898 -121483222 - Lx7 LINE L1 -651 7045 6733 1 845 1970 221 24 5 chr4 34146888 34147132 -121482988 - Lx7 LINE L1 -1086 6610 6358 1 845 666 25 0 0 chr4 34147132 34147212 -121482908 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 1 845 1970 221 24 5 chr4 34147212 34147380 -121482740 - Lx7 LINE L1 -1339 6357 6191 1 845 1178 309 78 68 chr4 34147429 34147479 -121482641 - Lx5 LINE L1 -18 7032 6983 1 845 2760 66 39 21 chr4 34147479 34147868 -121482252 + MTA_Mm LTR MaLR 1 396 0 1 845 1178 309 78 68 chr4 34147868 34148365 -121481755 - Lx5 LINE L1 -68 6982 6480 1 845 1078 263 49 32 chr4 34148362 34148774 -121481346 - Lx5 LINE L1 -687 6363 5922 1 845 2210 192 28 26 chr4 34148774 34149507 -121480613 - Lx7 LINE L1 -1505 6191 5446 1 845 3197 127 62 29 chr4 34149508 34150172 -121479948 + L1_Mur3 LINE L1 1672 2357 -3523 1 845 636 300 120 25 chr4 34150172 34150446 -121479674 + MTD LTR MaLR 106 405 -14 1 845 406 297 45 30 chr4 34150826 34150958 -121479162 + B1F2 SINE Alu 7 140 -9 1 845 405 231 0 0 chr4 34150965 34151043 -121479077 + ID4 SINE ID 3 80 -3 1 845 444 37 0 0 chr4 34152372 34152426 -121477694 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 845 304 333 27 27 chr4 34152631 34152779 -121477341 - L1ME3 LINE L1 -7 6155 6008 1 845 275 294 55 18 chr4 34152880 34153063 -121477057 - L1ME3 LINE L1 -316 5863 5675 1 845 1870 170 36 15 chr4 34153126 34153461 -121476659 + MTC LTR MaLR 80 421 0 1 845 2582 59 29 12 chr4 34153538 34153883 -121476237 - L1Md_F2 LINE L1 -12 6570 6220 1 845 1742 286 121 56 chr4 34154008 34154725 -121475395 - Lx9 LINE L1 -540 7104 6341 1 845 432 0 0 0 chr4 34154727 34154775 -121475345 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 845 411 278 169 32 chr4 34154913 34155162 -121474958 - L1M4 LINE L1 -2103 4043 3761 1 845 345 281 139 60 chr4 34155227 34155611 -121474509 - L1MC LINE L1 -2385 3761 3341 1 845 285 296 0 27 chr4 34155686 34155759 -121474361 - B1_Mur1 SINE Alu 0 149 79 1 845 1179 140 75 5 chr4 34155753 34155954 -121474166 - URR1B DNA MER1_type -10 215 1 1 845 300 300 24 24 chr4 34155954 34156010 -121474110 - B1_Mur1 SINE Alu -55 94 39 1 845 24 0 0 0 chr4 34156012 34156036 -121474084 + GC_rich Low_complexity Low_complexity 1 24 0 1 845 7129 133 12 14 chr4 34156612 34158764 -121471356 - Lx LINE L1 -7 6647 4495 1 845 308 282 146 49 chr4 34158764 34158887 -121471233 + ID_B1 SINE B4 86 220 -4 1 845 549 216 116 9 chr4 34158777 34158889 -121471231 + B1_Mur1 SINE Alu 23 146 -3 1 845 239 319 45 41 chr4 34158933 34159175 -121470945 + L1_Mur3 LINE L1 1448 1690 -4190 1 845 614 205 8 0 chr4 34159234 34159356 -121470764 - Lx7 LINE L1 -673 7023 6901 1 845 2161 192 83 53 chr4 34159356 34160015 -121470105 + Lx7 LINE L1 7018 7696 0 1 845 236 289 51 130 chr4 34160046 34160366 -121469754 + L1_Rod LINE L1 1749 2033 -3814 1 845 3167 39 8 0 chr4 34160366 34160750 -121469370 + L1_Mus1 LINE L1 6181 6567 0 1 845 236 289 51 130 chr4 34160750 34160899 -121469221 + L1_Rod LINE L1 2034 2181 -3666 1 845 1043 303 56 16 chr4 34160904 34161480 -121468640 + L1_Mur3 LINE L1 5223 5821 -59 1 845 213 39 0 0 chr4 34161570 34161596 -121468524 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 845 387 304 86 43 chr4 34161640 34161757 -121468363 - RSINE1 SINE B4 -18 147 26 1 845 28 29 0 0 chr4 34161995 34162030 -121468090 + AT_rich Low_complexity Low_complexity 1 35 0 1 845 1411 285 135 34 chr4 34162638 34163291 -121466829 - Lx8 LINE L1 -249 7224 6506 1 845 556 275 8 0 chr4 34163276 34163407 -121466713 - Lx8 LINE L1 -1145 6328 6197 1 845 324 0 0 0 chr4 34163803 34163839 -121466281 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 845 1060 293 78 36 chr4 34163839 34164853 -121465267 - L1_Mur3 LINE L1 -3565 2282 1212 1 845 1717 188 123 5 chr4 34165024 34165399 -121464721 - MTD LTR MaLR 0 419 1 1 845 367 231 42 17 chr4 34165423 34165542 -121464578 - MTC-int LTR MaLR -62 1196 1075 2 845 2032 223 58 18 chr4 34165585 34166292 -121463828 - Lx5 LINE L1 -410 6640 5859 2 845 1561 248 33 30 chr4 34166293 34166688 -121463432 + Lx5 LINE L1 6642 7037 -13 2 845 897 211 55 0 chr4 34166691 34166890 -121463230 - MTC-int LTR MaLR -173 1085 876 2 845 963 229 48 52 chr4 34166938 34167187 -121462933 - MTC-int LTR MaLR -605 653 406 2 845 778 282 32 32 chr4 34167212 34167465 -121462655 - MTC-int LTR MaLR -1004 254 2 2 845 1805 217 36 26 chr4 34167466 34167883 -121462237 - MTC LTR MaLR 0 421 1 2 845 1094 153 0 6 chr4 34168772 34168943 -121461177 + Lx6 LINE L1 6323 6492 -968 2 845 2154 253 83 28 chr4 34168944 34169591 -121460529 + Lx6 LINE L1 6777 7459 -1 2 845 5634 213 89 63 chr4 34169585 34171776 -121458344 + L1_Rod LINE L1 1302 3550 -2297 2 845 857 195 107 30 chr4 34171771 34171834 -121458286 + L1_Rod LINE L1 5049 5127 -720 2 845 854 68 8 0 chr4 34171834 34171952 -121458168 + (GAA)n Simple_repeat Simple_repeat 3 121 0 2 845 857 195 107 30 chr4 34171952 34172158 -121457962 + L1_Rod LINE L1 5128 5338 -509 2 845 1733 199 65 92 chr4 34172156 34172505 -121457615 + Lx9 LINE L1 7059 7418 -226 2 845 324 0 0 0 chr4 34172505 34172541 -121457579 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 845 1733 199 65 92 chr4 34172541 34172777 -121457343 + Lx9 LINE L1 7419 7627 -17 2 845 255 299 12 38 chr4 34173000 34173080 -121457040 + ID2 SINE ID 3 80 -3 2 845 533 226 0 9 chr4 34173101 34173208 -121456912 + U6 snRNA snRNA 2 107 0 2 845 345 295 19 0 chr4 34173522 34173627 -121456493 - PB1D10 SINE Alu -8 109 3 2 845 250 333 69 17 chr4 34173847 34174079 -121456041 - Lx9 LINE L1 -188 7456 7213 2 845 267 291 95 59 chr4 34174060 34174230 -121455890 - Lx9 LINE L1 -451 7193 6946 2 845 487 198 113 0 chr4 34174622 34174728 -121455392 - ETnERV2-int LTR ERVK -219 7187 7070 2 845 1611 274 76 26 chr4 34174748 34175369 -121454751 - Lx9 LINE L1 -631 7013 6362 2 845 1030 164 17 0 chr4 34175451 34175628 -121454492 + ORR1B2 LTR MaLR 186 365 -2 2 845 466 254 40 49 chr4 34175634 34175991 -121454129 - Lx9 LINE L1 -1536 6108 5723 2 845 459 285 59 13 chr4 34176279 34176432 -121453688 - MER5A1 DNA MER1_type 0 166 7 2 845 348 133 0 0 chr4 34177109 34177169 -121452951 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 845 631 346 31 78 chr4 34178460 34178843 -121451277 - MT2A LTR ERVL -149 384 20 2 845 451 225 91 8 chr4 34178735 34178856 -121451264 - MTE2a LTR MaLR -243 136 6 2 845 251 299 8 64 chr4 34178876 34179001 -121451119 - HERVL32-int LTR ERVL -1117 2301 2184 2 845 4056 172 78 87 chr4 34180403 34181313 -121448807 - RMER19B LTR ERVK 0 902 1 2 845 1092 80 28 11 chr4 34181386 34181562 -121448558 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 2 845 636 74 0 0 chr4 34181594 34181689 -121448431 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 845 634 231 18 25 chr4 34182669 34182817 -121447303 + B3A SINE B2 16 163 -32 2 845 432 67 0 0 chr4 34182817 34182877 -121447243 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 845 402 247 84 90 chr4 34182877 34182906 -121447214 + B2_Mm2 SINE B2 164 192 -3 2 845 383 206 130 30 chr4 34184508 34184608 -121445512 + B4 SINE B4 4 113 -179 2 845 710 253 31 52 chr4 34184584 34184776 -121445344 + B3 SINE B2 29 216 0 2 845 521 270 175 50 chr4 34184812 34184972 -121445148 + B4 SINE B4 97 276 -16 2 845 330 26 0 0 chr4 34185673 34185712 -121444408 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 845 1782 228 40 0 chr4 34185712 34186111 -121444009 + MTD LTR MaLR 1 415 -4 2 845 3082 167 57 4 chr4 34186618 34187165 -121442955 + RMER4B LTR ERVK 1 576 -9 2 845 255 348 98 31 chr4 34187790 34187983 -121442137 - Helitron3Na_Mam RC Helitron -280 206 1 2 845 655 295 36 0 chr4 34187988 34188181 -121441939 - MER58C DNA MER1_type -15 200 1 2 845 522 0 0 0 chr4 34188670 34188728 -121441392 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 845 943 280 93 146 chr4 34188732 34189129 -121440991 + MLT2B1 LTR ERVL 18 393 -21 2 845 245 151 19 0 chr4 34189129 34189182 -121440938 + CT-rich Low_complexity Low_complexity 2 55 0 2 845 270 0 0 0 chr4 34189184 34189214 -121440906 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 845 26 30 0 0 chr4 34189898 34189931 -121440189 + AT_rich Low_complexity Low_complexity 1 33 0 2 845 635 280 123 63 chr4 34190210 34190812 -121439308 + L1ME2 LINE L1 5525 6162 -2 2 845 273 312 95 34 chr4 34191102 34191281 -121438839 - LTR40a LTR ERVL 0 519 330 2 845 587 264 58 23 chr4 34191308 34191479 -121438641 - LTR40a LTR ERVL -342 177 1 2 845 182 326 21 42 chr4 34191516 34191612 -121438508 + L2a LINE L2 3333 3426 0 2 845 7437 155 40 6 chr4 34191924 34193757 -121436363 - Lx2B LINE L1 -1 6999 5097 2 845 344 97 16 0 chr4 34193751 34193813 -121436307 + MusHAL1 LINE L1 703 765 -1947 2 845 6754 145 20 71 chr4 34193812 34195228 -121434892 - Lx2B LINE L1 -1901 3985 2644 2 845 243 0 0 0 chr4 34195228 34195255 -121434865 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 845 6754 145 20 71 chr4 34195255 34195294 -121434826 - Lx2B LINE L1 -3243 2643 2605 2 845 640 215 35 35 chr4 34197614 34197812 -121432308 + Lx9 LINE L1 2710 2907 -2940 2 845 775 230 29 16 chr4 34197847 34198090 -121432030 + Lx9 LINE L1 5215 5460 -387 2 845 5488 234 74 57 chr4 34198090 34200042 -121430078 + Lx9 LINE L1 5659 7643 -1 2 845 24 32 0 0 chr4 34202326 34202357 -121427763 + AT_rich Low_complexity Low_complexity 1 31 0 2 845 369 0 0 0 chr4 34203007 34203048 -121427072 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 845 793 278 0 0 chr4 34203052 34203214 -121426906 - B3 SINE B2 -52 164 3 2 845 248 43 54 54 chr4 34203321 34203395 -121426725 + A-rich Low_complexity Low_complexity 3 76 0 2 845 397 292 0 0 chr4 34204753 34204842 -121425278 + B3A SINE B2 2 90 -108 2 845 186 43 0 0 chr4 34204899 34204922 -121425198 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 845 6021 74 18 1 chr4 34204972 34205754 -121424366 - Lx3_Mus LINE L1 0 7009 6215 2 845 234 0 0 0 chr4 34206302 34206328 -121423792 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 845 378 0 0 0 chr4 34206905 34206947 -121423173 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 845 1941 108 7 0 chr4 34207485 34207773 -121422347 - L1_Mus3 LINE L1 -1 6637 6348 2 845 714 94 38 0 chr4 34207955 34208061 -121422059 - B1_Mus1 SINE Alu 0 148 39 2 845 774 289 169 62 chr4 34208756 34209600 -121420520 + Charlie1a DNA MER1_type 482 1416 -39 2 846 219 388 12 0 chr4 34210366 34210446 -121419674 + MIR3 SINE MIR 93 173 -35 2 846 324 220 0 25 chr4 34212185 34212306 -121417814 + GA-rich Low_complexity Low_complexity 4 121 0 2 846 309 183 0 0 chr4 34213359 34213419 -121416701 + CT-rich Low_complexity Low_complexity 2 61 0 2 846 326 261 23 115 chr4 34213830 34213960 -121416160 - ORR1D1 LTR MaLR -256 118 1 2 846 22 35 0 0 chr4 34214328 34214357 -121415763 + AT_rich Low_complexity Low_complexity 1 29 0 2 846 952 264 49 38 chr4 34214400 34214687 -121415433 + B4A SINE B4 2 291 -1 2 846 798 277 117 50 chr4 34214945 34215440 -121414680 - MT2A LTR ERVL -3 530 3 2 846 796 247 35 64 chr4 34216339 34216651 -121413469 - L1MA7 LINE L1 -194 6097 5795 2 846 210 37 0 0 chr4 34216651 34216678 -121413442 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 846 767 344 57 26 chr4 34216868 34217361 -121412759 - Lx8 LINE L1 -73 7400 6893 2 846 2712 179 42 14 chr4 34217373 34217927 -121412193 - Lx7 LINE L1 -333 7363 6795 2 846 5105 264 67 11 chr4 34218095 34219972 -121410148 - L1_Mur3 LINE L1 -332 5548 3567 2 846 3848 89 7 0 chr4 34219971 34220545 -121409575 + L1_Mm LINE L1 3546 4123 -1760 2 846 621 295 88 3 chr4 34220545 34220851 -121409269 - L1_Mur3 LINE L1 -2318 3562 3231 2 846 290 234 220 14 chr4 34220996 34221219 -121408901 - L1M2 LINE L1 -3671 2469 2202 2 846 386 271 113 15 chr4 34221237 34221432 -121408688 - U3 snRNA snRNA -1 216 3 2 846 1194 241 105 6 chr4 34221592 34221934 -121408186 - MTE2b LTR MaLR -1 378 3 2 846 3118 91 36 17 chr4 34221940 34222410 -121407710 - L1_Mus3 LINE L1 0 6638 6160 2 846 1752 113 10 30 chr4 34222411 34222713 -121407407 + L1_Mus3 LINE L1 5849 6144 -494 2 846 472 298 50 54 chr4 34222812 34223092 -121407028 - L1MA4 LINE L1 -389 5911 5633 2 846 11924 170 48 84 chr4 34223138 34226343 -121403777 - Lx4B LINE L1 -61 6997 3538 2 846 2839 52 0 0 chr4 34226343 34226690 -121403430 + L1_Mus1 LINE L1 6221 6567 0 2 846 186 43 0 0 chr4 34226696 34226719 -121403401 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 2 846 11924 155 49 117 chr4 34226719 34226912 -121403208 - Lx4B LINE L1 -2340 3537 3505 2 846 371 250 124 31 chr4 34226912 34227073 -121403047 + MLT1A0 LTR MaLR 182 357 -8 2 846 11924 155 49 117 chr4 34227073 34227089 -121403031 - Lx4B LINE L1 -2340 3504 3502 2 846 207 0 0 0 chr4 34227089 34227112 -121403008 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 846 11924 155 49 117 chr4 34227112 34227615 -121402505 - Lx4B LINE L1 -2376 3501 2974 2 846 500 208 68 89 chr4 34227760 34228006 -121402114 + LTRIS4 LTR ERV1 276 507 0 2 846 1418 160 59 0 chr4 34228020 34228308 -121401812 - Lx4B LINE L1 -2926 2951 2647 2 846 1932 146 60 41 chr4 34228327 34228456 -121401664 - Lx4B LINE L1 -4230 1647 1501 2 846 641 47 0 12 chr4 34228456 34228542 -121401578 + (TCC)n Simple_repeat Simple_repeat 3 87 0 2 846 1932 195 26 58 chr4 34228542 34229096 -121401024 - Lx4B LINE L1 -4377 1500 889 2 846 245 270 90 0 chr4 34229656 34229745 -121400375 - L1_Mur3 LINE L1 -461 5419 5323 2 846 2950 79 16 19 chr4 34229798 34230224 -121399896 + Lx3_Mus LINE L1 6585 7009 0 2 846 21 36 0 0 chr4 34230224 34230252 -121399868 + AT_rich Low_complexity Low_complexity 1 28 0 2 846 1223 279 71 0 chr4 34230296 34230661 -121399459 - Lx8 LINE L1 -42 7431 7041 2 846 479 247 20 26 chr4 34230656 34230851 -121399269 - L1M2 LINE L1 -776 5367 5174 2 846 408 125 0 0 chr4 34230851 34230915 -121399205 + (TCC)n Simple_repeat Simple_repeat 2 65 0 2 846 316 308 149 21 chr4 34230916 34231158 -121398962 - L1M2 LINE L1 -2841 3302 3030 2 846 22 35 0 0 chr4 34231705 34231734 -121398386 + AT_rich Low_complexity Low_complexity 1 29 0 2 846 220 347 14 7 chr4 34232065 34232213 -121397907 + GA-rich Low_complexity Low_complexity 4 152 0 2 846 21 36 0 0 chr4 34232461 34232489 -121397631 + AT_rich Low_complexity Low_complexity 1 28 0 2 846 1180 258 56 4 chr4 34233418 34233687 -121396433 - MTEa LTR MaLR -96 283 1 2 846 312 318 147 18 chr4 34233851 34234136 -121395984 - L1M4c LINE L1 -3959 2891 2570 2 846 232 286 9 37 chr4 34234416 34234525 -121395595 - L1M4c LINE L1 -4262 2587 2482 2 846 314 338 125 38 chr4 34234736 34235056 -121395064 - L1M4c LINE L1 -4811 2039 1692 2 846 613 324 9 5 chr4 34236066 34236289 -121393831 + MER58A DNA MER1_type 1 224 0 2 846 530 272 15 122 chr4 34236403 34236608 -121393512 - B3A SINE B2 -15 183 1 2 846 226 325 26 0 chr4 34236662 34236779 -121393341 - L1M5 LINE L1 -440 5684 5565 2 846 312 247 12 25 chr4 34237677 34237781 -121392339 + L1MC1 LINE L1 6022 6120 -1665 2 846 249 277 134 0 chr4 34237836 34237948 -121392172 + L1MC1 LINE L1 6207 6333 0 2 846 191 316 89 0 chr4 34239698 34239777 -121390343 + L3 LINE CR1 3660 3745 -744 2 846 784 273 139 55 chr4 34239778 34240123 -121389997 + MTE2a LTR MaLR 6 379 0 2 846 261 0 0 0 chr4 34240126 34240155 -121389965 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 846 296 312 43 0 chr4 34240390 34240483 -121389637 + RSINE1 SINE B4 3 99 -66 2 846 250 294 29 0 chr4 34240484 34240586 -121389534 + L1M2 LINE L1 5534 5638 -662 2 846 260 27 27 0 chr4 34240628 34240665 -121389455 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 846 1134 66 0 0 chr4 34240679 34240816 -121389304 - B1_Mus1 SINE Alu -10 138 2 3 846 25 51 0 0 chr4 34240825 34240864 -121389256 + AT_rich Low_complexity Low_complexity 1 39 0 3 846 333 362 0 0 chr4 34240873 34240953 -121389167 + RSINE1 SINE B4 86 165 0 2 846 212 298 74 37 chr4 34241076 34241184 -121388936 - MIRb SINE MIR -36 232 121 3 846 265 345 18 0 chr4 34241269 34241379 -121388741 + MLT1D LTR MaLR 84 195 -310 3 846 242 367 0 16 chr4 34241467 34241589 -121388531 + MLT1D LTR MaLR 310 429 -38 3 846 461 260 166 0 chr4 34242277 34242446 -121387674 - B3A SINE B2 0 198 2 3 846 186 250 0 0 chr4 34243656 34243692 -121386428 - MIRm SINE MIR -140 136 101 3 846 1314 83 33 0 chr4 34243788 34243969 -121386151 + B2_Mm2 SINE B2 1 187 -8 3 846 186 133 0 0 chr4 34244077 34244107 -121386013 + (A)n Simple_repeat Simple_repeat 1 30 0 3 846 2699 91 47 30 chr4 34244337 34245104 -121385016 + Lx3A LINE L1 6080 6966 -15 3 846 216 0 0 0 chr4 34245104 34245128 -121384992 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 846 529 289 179 110 chr4 34245308 34245498 -121384622 + ORR1D2 LTR MaLR 1 205 -165 3 846 1715 93 42 0 chr4 34245498 34245757 -121384363 + L1_Mus3 LINE L1 6367 6636 -2 3 846 529 289 179 110 chr4 34245757 34245912 -121384208 + ORR1D2 LTR MaLR 206 370 0 3 846 624 266 69 42 chr4 34245937 34246153 -121383967 + ORR1D2-int LTR MaLR 39 260 -1110 3 846 452 128 68 23 chr4 34246162 34246250 -121383870 + ORR1D2 LTR MaLR 279 370 0 3 846 407 242 83 83 chr4 34246482 34246662 -121383458 + MIRb SINE MIR 43 222 -46 3 846 244 342 146 18 chr4 34246999 34247163 -121382957 - L2b LINE L2 -6 3369 3185 3 846 21 0 0 0 chr4 34248323 34248344 -121381776 + AT_rich Low_complexity Low_complexity 1 21 0 3 846 426 53 0 0 chr4 34248948 34249005 -121381115 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 846 1307 280 53 43 chr4 34249133 34249529 -121380591 - MTD LTR MaLR -14 405 6 3 846 1513 266 177 13 chr4 34249531 34250141 -121379979 - MTD-int LTR MaLR -13 1245 429 3 846 3264 26 39 0 chr4 34250141 34250522 -121379598 + MTA_Mm LTR MaLR 1 396 0 3 846 1257 294 158 61 chr4 34250522 34250858 -121379262 - MTD-int LTR MaLR -670 428 47 3 846 1209 68 0 0 chr4 34250888 34251035 -121379085 + B1_Mus1 SINE Alu 1 147 -1 3 846 30603 82 21 1 chr4 34251124 34254868 -121375252 + L1Md_F2 LINE L1 373 4206 -1677 3 846 405 0 0 0 chr4 34254868 34254913 -121375207 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 846 30603 72 8 1 chr4 34254913 34256292 -121373828 + L1Md_F2 LINE L1 4207 5583 -300 3 846 7648 64 7 4 chr4 34256294 34257287 -121372833 + L1Md_F2 LINE L1 5587 6582 0 3 846 249 159 0 0 chr4 34257295 34257339 -121372781 + (TATG)n Simple_repeat Simple_repeat 3 46 0 3 846 776 342 60 31 chr4 34257456 34257870 -121372250 - MT2A LTR ERVL -107 426 1 3 846 253 279 89 42 chr4 34258705 34258918 -121371202 + RLTR21 LTR ERVK 1084 1306 -266 3 846 200 208 0 20 chr4 34258919 34258968 -121371152 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 846 966 294 22 55 chr4 34258986 34259349 -121370771 - ORR1E LTR MaLR -4 355 5 3 846 857 117 0 7 chr4 34261699 34261837 -121368283 + (TTC)n Simple_repeat Simple_repeat 1 137 0 3 846 302 167 30 15 chr4 34261838 34261905 -121368215 - B1_Mur3 SINE Alu -9 140 73 3 846 399 356 34 58 chr4 34262817 34263023 -121367097 - B4A SINE B4 -7 285 85 3 846 587 123 8 0 chr4 34263033 34263155 -121366965 + (TC)n Simple_repeat Simple_repeat 1 123 0 3 846 258 278 14 27 chr4 34263157 34263231 -121366889 - B4A SINE B4 -217 75 3 3 846 316 286 25 0 chr4 34263412 34263531 -121366589 + Lx7 LINE L1 7217 7338 -358 3 846 670 286 46 42 chr4 34264190 34264431 -121365689 - MLT1E1 LTR MaLR -6 648 407 3 846 273 317 40 86 chr4 34264514 34264666 -121365454 - MLT1E1 LTR MaLR -399 161 17 3 846 1252 51 6 0 chr4 34266077 34266235 -121363885 + B2_Mm1t SINE B2 2 160 -33 3 846 206 0 0 65 chr4 34266235 34266266 -121363854 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 846 641 316 13 71 chr4 34266274 34266499 -121363621 + B4 SINE B4 81 292 0 3 846 379 313 0 38 chr4 34266585 34266771 -121363349 + (CATA)n Simple_repeat Simple_repeat 1 179 0 3 846 2873 58 0 0 chr4 34266849 34267195 -121362925 + ORR1A0 LTR MaLR 1 346 0 3 846 3380 54 15 0 chr4 34267195 34267801 -121362319 + ORR1A0-int LTR MaLR 1 426 -1366 3 846 1471 226 129 25 chr4 34268535 34269015 -121361105 - Lx2B LINE L1 -11 6989 6460 3 846 3552 68 55 4 chr4 34269016 34269491 -121360629 + L1_Mus1 LINE L1 6068 6566 -1 3 846 283 323 16 16 chr4 34269528 34269654 -121360466 + Tigger5 DNA MER2_type 79 204 -2202 3 846 471 305 96 49 chr4 34269766 34270383 -121359737 + L1MC LINE L1 3197 3842 -2304 3 846 249 276 17 17 chr4 34270395 34270454 -121359666 + ID SINE ID 15 73 -151 3 846 339 25 0 0 chr4 34270456 34270496 -121359624 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 846 1249 237 126 19 chr4 34270496 34270884 -121359236 + MT2A LTR ERVL 74 582 -2 3 846 233 246 0 0 chr4 34270905 34270962 -121359158 + L1M1 LINE L1 5812 5868 -432 3 846 1141 37 0 0 chr4 34270998 34271133 -121358987 - B1_Mm SINE Alu -12 135 1 3 846 387 269 153 40 chr4 34271152 34271531 -121358589 + L1MA6 LINE L1 5875 6296 -4 3 846 850 266 5 36 chr4 34271645 34271867 -121358253 - B3 SINE B2 0 216 2 3 846 25 95 0 0 chr4 34272109 34272183 -121357937 + AT_rich Low_complexity Low_complexity 1 74 0 3 846 345 47 0 0 chr4 34272462 34272505 -121357615 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 846 398 262 120 20 chr4 34272653 34273020 -121357100 + L1MC LINE L1 5122 5532 -647 3 846 240 35 0 0 chr4 34273072 34273101 -121357019 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 846 796 268 21 42 chr4 34273109 34273300 -121356820 - B4A SINE B4 0 292 106 3 846 1242 221 90 51 chr4 34273555 34273889 -121356231 - ORR1E LTR MaLR -11 348 2 3 846 363 240 91 23 chr4 34273905 34274037 -121356083 + L1MD2 LINE L1 5788 5928 -431 3 846 1419 203 120 58 chr4 34274213 34274589 -121355531 - MTD LTR MaLR 0 419 21 3 846 559 321 61 5 chr4 34275003 34275194 -121354926 + MIR SINE MIR 11 214 -48 3 846 2092 139 6 0 chr4 34275194 34275518 -121354602 - ORR1A3 LTR MaLR 0 326 1 3 846 559 321 61 5 chr4 34275518 34275539 -121354581 + MIR SINE MIR 215 235 -27 3 846 1600 225 95 8 chr4 34276046 34276414 -121353706 - MTD LTR MaLR 0 419 20 3 846 1419 112 4 0 chr4 34277160 34277393 -121352727 + L1_Mus2 LINE L1 2349 2582 -3301 3 846 4994 104 6 30 chr4 34277388 34278178 -121351942 + L1_Mus2 LINE L1 3095 3865 -2018 3 846 7776 79 5 8 chr4 34278168 34279888 -121350232 + L1_Mus2 LINE L1 4844 6561 -5 3 846 380 71 18 0 chr4 34279896 34279952 -121350168 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 846 261 0 0 0 chr4 34279970 34279999 -121350121 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 846 684 191 7 56 chr4 34280015 34280159 -121349961 + B1F SINE Alu 10 146 -3 3 846 2289 109 153 0 chr4 34280508 34280920 -121349200 + IAPLTR2_Mm LTR ERVK 1 475 0 3 846 3580 95 21 34 chr4 34280921 34281754 -121348366 + IAPEz-int LTR ERVK 9 662 -5819 3 846 2179 83 0 0 chr4 34281754 34282032 -121348088 + IAPEz-int LTR ERVK 1359 1636 -4845 3 846 6397 31 4 12 chr4 34282031 34282783 -121347337 + IAPEz-int LTR ERVK 5736 6481 0 3 846 2335 114 122 28 chr4 34282783 34283217 -121346903 + IAPLTR2_Mm LTR ERVK 1 475 0 3 846 1827 126 71 91 chr4 34283318 34283712 -121346408 - ORR1B1 LTR MaLR -8 386 1 3 846 445 254 163 17 chr4 34284039 34284211 -121345909 + B4A SINE B4 2 198 -94 3 846 513 141 0 0 chr4 34284232 34284317 -121345803 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 846 398 180 10 0 chr4 34284324 34284424 -121345696 + GA-rich Low_complexity Low_complexity 5 105 0 3 846 934 194 21 16 chr4 34286166 34286360 -121343760 - ORR1D1-int LTR MaLR -126 1244 1050 3 846 554 204 7 77 chr4 34286586 34286729 -121343391 - ORR1D1 LTR MaLR 0 370 238 3 846 5215 69 35 10 chr4 34286729 34287522 -121342598 + RLTR13C2 LTR ERVK 1 983 0 3 846 1057 215 16 55 chr4 34287522 34287771 -121342349 - ORR1D1 LTR MaLR -131 243 5 3 846 679 186 0 0 chr4 34287798 34287927 -121342193 - URR1B DNA MER1_type -11 214 86 3 846 525 44 0 0 chr4 34288004 34288072 -121342048 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 3 846 946 236 17 84 chr4 34288077 34288391 -121341729 - MT2B LTR ERVL -63 538 85 3 846 2999 59 200 9 chr4 34288407 34288837 -121341283 - RLTR1B LTR ERV1 0 512 1 3 846 68009 22 0 0 chr4 34288837 34296394 -121333726 - MMERGLN-int LTR ERV1 0 7556 1 3 846 3025 56 200 9 chr4 34296394 34296824 -121333296 - RLTR1B LTR ERV1 0 512 1 3 846 430 170 0 27 chr4 34296898 34296992 -121333128 - MT2B LTR ERVL -440 93 3 3 846 4771 212 45 7 chr4 34296994 34298060 -121332060 - ORR1D1-int LTR MaLR -161 1209 103 3 846 3281 23 5 32 chr4 34298060 34298461 -121331659 + RLTR10 LTR ERVK 1 390 0 3 846 8311 29 26 0 chr4 34298461 34299424 -121330696 + RLTR10-int LTR ERVK 1 988 -999 3 846 8967 17 0 2 chr4 34299504 34300499 -121329621 + RLTR10-int LTR ERVK 992 1984 -3 3 846 3281 23 5 32 chr4 34300501 34300902 -121329218 + RLTR10 LTR ERVK 1 390 0 3 846 2543 46 0 0 chr4 34300902 34301206 -121328914 + RLTR10-int LTR ERVK 1 304 -1683 3 846 219 88 0 0 chr4 34301807 34301841 -121328279 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 846 267 31 0 0 chr4 34302103 34302135 -121327985 + (A)n Simple_repeat Simple_repeat 1 32 0 3 846 2613 31 2 257 chr4 34302143 34302664 -121327456 + RLTR10 LTR ERVK 1 388 -2 3 846 391 279 29 0 chr4 34302666 34302770 -121327350 - ORR1D1-int LTR MaLR -1263 107 1 3 846 1644 158 127 9 chr4 34302774 34303105 -121327015 - ORR1D1 LTR MaLR -4 370 1 3 846 428 306 148 25 chr4 34303124 34303402 -121326718 + LTR52 LTR ERVL 82 393 -28 3 846 583 316 13 0 chr4 34304026 34304178 -121325942 + RSINE1 SINE B4 8 161 -4 3 846 266 317 16 16 chr4 34304750 34304872 -121325248 + L1_Rod LINE L1 466 587 -6585 3 846 24 32 0 0 chr4 34304876 34304907 -121325213 + AT_rich Low_complexity Low_complexity 1 31 0 3 846 3379 21 18 0 chr4 34304935 34305324 -121324796 - MTA_Mm LTR MaLR 0 396 1 3 846 468 0 0 0 chr4 34305336 34305388 -121324732 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 846 311 261 259 8 chr4 34305408 34305539 -121324581 - B3 SINE B2 -52 164 1 3 846 254 31 0 0 chr4 34305581 34305613 -121324507 - RLTR45 LTR ERVK 0 482 451 3 846 682 250 76 5 chr4 34305619 34305816 -121324304 - MTD LTR MaLR -208 211 1 3 846 238 191 9 152 chr4 34305816 34305842 -121324278 + L1_Mur3 LINE L1 3950 3974 -1906 3 846 1767 176 99 20 chr4 34305842 34306196 -121323924 + ORR1C2 LTR MaLR 3 384 0 3 846 238 191 9 152 chr4 34306196 34306274 -121323846 + L1_Mur3 LINE L1 3975 4039 -1841 3 846 3272 219 51 51 chr4 34306281 34307179 -121322941 + Lx4B LINE L1 4731 5663 -1395 3 846 1871 97 3 18 chr4 34307188 34307471 -121322649 - MTC LTR MaLR -12 409 131 3 846 234 232 248 46 chr4 34307471 34307655 -121322465 + Lx9 LINE L1 7407 7627 -17 3 846 409 318 37 37 chr4 34307977 34308140 -121321980 - RSINE1 SINE B4 0 165 3 3 846 645 328 45 77 chr4 34308336 34308432 -121321688 - B4A SINE B4 0 292 212 3 846 2203 169 68 8 chr4 34308432 34308826 -121321294 - MTC LTR MaLR -2 419 2 3 846 645 328 45 77 chr4 34308826 34309016 -121321104 - B4A SINE B4 -81 211 15 3 846 543 281 153 59 chr4 34309268 34309644 -121320476 - MLT1D LTR MaLR -24 443 23 3 846 396 293 35 7 chr4 34310116 34310257 -121319863 + HAL1 LINE L1 759 903 -1604 3 846 3155 68 0 15 chr4 34310504 34310906 -121319214 - MTA_Mm LTR MaLR 0 396 1 3 846 1903 101 12 68 chr4 34310958 34311298 -121318822 - ORR1A4 LTR MaLR -8 321 1 3 846 1621 11 32 0 chr4 34311441 34311628 -121318492 + B2_Mm1a SINE B2 1 193 0 3 846 225 191 0 0 chr4 34311649 34311691 -121318429 - L1MC1 LINE L1 -230 6103 6062 3 846 1529 251 156 35 chr4 34311727 34312491 -121317629 - L1MC2 LINE L1 -261 6083 5212 4 846 278 147 0 29 chr4 34312539 34312620 -121317500 + Lx6 LINE L1 7352 7417 -43 4 846 371 241 28 0 chr4 34312744 34312852 -121317268 - L1MA6 LINE L1 -101 6199 6089 4 846 282 276 53 0 chr4 34312863 34312939 -121317181 + HAL1 LINE L1 1627 1706 -801 3 846 243 296 123 13 chr4 34313432 34313586 -121316534 - MER2 DNA MER2_type -103 242 72 4 846 21 0 0 0 chr4 34313985 34314006 -121316114 + AT_rich Low_complexity Low_complexity 1 21 0 4 846 2108 121 12 6 chr4 34314134 34314466 -121315654 + ORR1B2 LTR MaLR 1 334 -33 4 846 329 281 57 76 chr4 34314488 34314750 -121315370 - RLTR15 LTR ERVK -27 332 76 4 846 2681 169 91 32 chr4 34314806 34315375 -121314745 + ORR1B2-int LTR MaLR 59 661 -848 4 846 273 119 0 0 chr4 34315388 34315430 -121314690 + B1_Mur3 SINE Alu 70 111 -38 4 846 1785 153 53 8 chr4 34315456 34315521 -121314599 + ORR1B2-int LTR MaLR 1138 1205 -304 4 846 183 42 0 0 chr4 34315521 34315545 -121314575 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 4 846 1785 153 53 8 chr4 34315545 34315835 -121314285 + ORR1B2-int LTR MaLR 1206 1507 -2 4 846 198 0 0 0 chr4 34315857 34315879 -121314241 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 4 846 3589 38 28 9 chr4 34316213 34316641 -121313479 + RLTR10C LTR ERVK 1 436 0 4 846 4197 150 120 9 chr4 34316750 34317551 -121312569 + RMER19B LTR ERVK 1 890 -12 4 846 196 234 0 21 chr4 34317690 34317738 -121312382 - MIRm SINE MIR -156 120 74 4 846 23 33 0 0 chr4 34319058 34319088 -121311032 + AT_rich Low_complexity Low_complexity 1 30 0 4 846 312 262 149 8 chr4 34319839 34319934 -121310186 - B1_Mur3 SINE Alu -17 103 1 4 846 183 317 67 46 chr4 34320104 34320299 -121309821 - L2 LINE L2 -600 2819 2621 4 846 265 287 29 10 chr4 34320768 34320870 -121309250 - L2 LINE L2 -1360 2059 1956 4 846 4185 56 91 0 chr4 34320934 34321473 -121308647 + L1Md_F2 LINE L1 5995 6582 0 4 846 634 211 8 0 chr4 34321895 34322023 -121308097 + B3 SINE B2 1 129 -87 4 846 592 139 41 8 chr4 34322386 34322509 -121307611 - Lx9 LINE L1 0 7644 7518 4 846 8575 211 80 58 chr4 34322513 34325099 -121305021 - Lx9 LINE L1 -813 6831 4182 4 846 1613 161 182 9 chr4 34325099 34325418 -121304702 - ORR1C1 LTR MaLR 0 378 5 4 846 8575 205 95 63 chr4 34325418 34326020 -121304100 - Lx9 LINE L1 -1666 4181 3578 4 846 387 0 0 0 chr4 34326020 34326063 -121304057 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 846 1119 158 113 5 chr4 34326067 34326270 -121303850 - URR1A DNA MER1_type 0 226 2 4 846 8575 205 95 63 chr4 34326270 34326587 -121303533 - Lx9 LINE L1 -2270 3577 3197 4 846 30 45 0 0 chr4 34326681 34326725 -121303395 + AT_rich Low_complexity Low_complexity 1 44 0 4 846 491 208 0 33 chr4 34327429 34327613 -121302507 + CT-rich Low_complexity Low_complexity 1 178 0 4 846 836 228 55 35 chr4 34328329 34328639 -121301481 - Lx9 LINE L1 -2642 3205 2890 4 846 1298 246 111 8 chr4 34328664 34329033 -121301087 + MTD LTR MaLR 1 407 -12 4 846 1665 300 79 32 chr4 34329041 34329959 -121300161 + L1M2 LINE L1 3833 4796 -1347 4 846 357 24 0 0 chr4 34329959 34330001 -121300119 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 846 1665 300 79 32 chr4 34330001 34330046 -121300074 + L1M2 LINE L1 4797 4840 -1303 4 846 225 213 15 62 chr4 34330137 34330202 -121299918 + MTD LTR MaLR 345 406 -13 4 846 695 271 27 48 chr4 34330215 34330586 -121299534 + MTD-int LTR MaLR 1 452 -806 4 846 1136 184 190 50 chr4 34330593 34330930 -121299190 + ORR1C2 LTR MaLR 1 384 0 4 846 597 278 0 15 chr4 34330984 34331119 -121299001 - Lx8 LINE L1 -213 7260 7128 4 846 1251 276 57 35 chr4 34331129 34331583 -121298537 + MTD-int LTR MaLR 172 635 -623 4 846 372 206 103 0 chr4 34331611 34331708 -121298412 + MTD-int LTR MaLR 1148 1254 -4 4 846 1098 255 100 26 chr4 34331713 34332103 -121298017 + MTD LTR MaLR 1 419 0 4 846 905 148 0 14 chr4 34332265 34332409 -121297711 + B1_Mus1 SINE Alu 1 142 -6 4 846 447 78 0 0 chr4 34332409 34332473 -121297647 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 846 467 223 27 0 chr4 34332601 34332713 -121297407 + B3A SINE B2 3 117 -81 4 846 2118 197 102 13 chr4 34332958 34333448 -121296672 - Lx3C LINE L1 0 7058 6421 4 846 288 274 0 0 chr4 34334614 34334676 -121295444 + Lx4A LINE L1 6895 6956 -102 4 846 273 167 0 0 chr4 34335284 34335338 -121294782 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 846 1271 34 0 0 chr4 34335706 34335853 -121294267 + B1_Mus2 SINE Alu 1 147 0 4 846 2204 184 166 21 chr4 34335898 34336514 -121293606 + RLTR40 LTR ERVK 1 705 -112 4 846 405 0 0 0 chr4 34337321 34337366 -121292754 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 846 528 113 260 84 chr4 34337366 34337520 -121292600 - RMER1B Other Other -19 1047 867 4 846 472 229 42 0 chr4 34337605 34337701 -121292419 - RMER1A Other Other -864 166 67 4 846 262 222 16 0 chr4 34337702 34337765 -121292355 + MLT1A1 LTR MaLR 333 396 -12 4 846 271 351 16 95 chr4 34338148 34338274 -121291846 + B4A SINE B4 26 141 -151 4 846 227 343 0 0 chr4 34338398 34338468 -121291652 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 846 204 235 0 0 chr4 34338621 34338672 -121291448 + (TTAA)n Simple_repeat Simple_repeat 1 51 0 4 846 237 203 16 63 chr4 34338860 34338923 -121291197 + ID2 SINE ID 1 60 -23 4 846 292 210 22 100 chr4 34338926 34339016 -121291104 + B3A SINE B2 113 195 -3 4 846 3509 30 0 0 chr4 34339307 34339703 -121290417 + MTA_Mm LTR MaLR 1 396 0 4 846 9578 23 3 0 chr4 34339703 34340798 -121289322 + MTA_Mm-int LTR MaLR 1 1098 0 4 105 3509 30 0 0 chr4 34340798 34341194 -121288926 + MTA_Mm LTR MaLR 1 396 0 4 847 438 123 86 0 chr4 34342325 34342406 -121287714 + ORR1D1 LTR MaLR 283 370 -4 4 847 352 0 42 0 chr4 34342438 34342486 -121287634 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 847 3662 81 23 12 chr4 34342589 34343102 -121287018 + Lx3_Mus LINE L1 6483 7001 -8 4 847 384 22 0 0 chr4 34343406 34343451 -121286669 + (TTG)n Simple_repeat Simple_repeat 1 45 0 4 847 201 74 0 0 chr4 34343567 34343594 -121286526 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 847 12225 208 66 57 chr4 34343736 34345857 -121284263 + L1_Rod LINE L1 451 2488 -3359 4 847 249 33 0 0 chr4 34345857 34345887 -121284233 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 847 12225 192 77 68 chr4 34345887 34347042 -121283078 + L1_Rod LINE L1 2489 3578 -2269 4 847 899 132 0 7 chr4 34347042 34347194 -121282926 + (GGAA)n Simple_repeat Simple_repeat 3 153 0 4 847 12225 192 77 68 chr4 34347194 34348350 -121281770 + L1_Rod LINE L1 3579 4754 -1093 4 847 2924 190 52 14 chr4 34348343 34348914 -121281206 + Lx9 LINE L1 6709 7301 -343 4 847 1108 194 78 16 chr4 34348964 34349080 -121281040 - Lx9 LINE L1 -1 7643 7524 4 847 195 69 0 0 chr4 34349080 34349109 -121281011 + (TGG)n Simple_repeat Simple_repeat 1 29 0 4 847 1108 194 78 16 chr4 34349109 34349311 -121280809 - Lx9 LINE L1 -121 7523 7305 4 847 740 211 13 20 chr4 34349329 34349479 -121280641 - B1_Mur3 SINE Alu 0 149 1 4 847 590 265 113 15 chr4 34349733 34349936 -121280184 - MLT1H LTR MaLR -270 279 57 4 847 220 114 68 0 chr4 34350019 34350063 -121280057 + T-rich Low_complexity Low_complexity 5 51 0 4 847 195 129 0 0 chr4 34350148 34350179 -121279941 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4 847 225 0 0 0 chr4 34350193 34350218 -121279902 + (TGG)n Simple_repeat Simple_repeat 2 26 0 4 847 277 345 35 14 chr4 34351249 34351393 -121278727 + L1_Rod LINE L1 65 211 -6961 4 847 834 204 153 18 chr4 34352100 34352375 -121277745 + L1_Rod LINE L1 469 780 -6392 4 847 5061 239 72 92 chr4 34352373 34353599 -121276521 + Lx9 LINE L1 3661 4899 -948 4 847 727 283 111 35 chr4 34353599 34353943 -121276177 - ORR1D2 LTR MaLR 0 370 1 4 847 958 150 75 43 chr4 34353947 34354135 -121275985 + B2_Mm2 SINE B2 2 195 0 4 847 5061 239 72 92 chr4 34354135 34354560 -121275560 + Lx9 LINE L1 4900 5251 -596 4 847 701 219 41 72 chr4 34354560 34354781 -121275339 + B3 SINE B2 3 216 0 4 847 5061 239 72 92 chr4 34354781 34355305 -121274815 + Lx9 LINE L1 5252 5778 -69 4 847 399 56 0 0 chr4 34355305 34355359 -121274761 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 847 5061 278 118 36 chr4 34355359 34355605 -121274515 + Lx9 LINE L1 5779 6096 -1548 4 847 1044 268 134 11 chr4 34355619 34355635 -121274485 + Lx9 LINE L1 6322 6336 -1308 4 847 297 0 0 0 chr4 34355635 34355668 -121274452 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 847 1044 268 134 11 chr4 34355668 34356009 -121274111 + Lx9 LINE L1 6337 6723 -921 4 847 1228 246 136 14 chr4 34356146 34356648 -121273472 + L1_Rod LINE L1 900 1470 -4377 4 847 198 143 0 0 chr4 34359019 34359054 -121271066 + (A)n Simple_repeat Simple_repeat 1 35 0 4 847 1018 206 20 0 chr4 34359213 34359417 -121270703 + B3 SINE B2 1 208 -8 4 847 2759 234 59 104 chr4 34359832 34359895 -121270225 - RCHARR1 DNA MER1_type -3 971 915 4 847 1648 158 210 17 chr4 34359895 34360248 -121269872 - MTC LTR MaLR 0 421 1 4 847 2759 234 59 104 chr4 34360248 34360369 -121269751 - RCHARR1 DNA MER1_type -60 914 780 4 847 486 299 93 57 chr4 34360369 34360649 -121269471 + B4A SINE B4 3 292 0 4 847 2759 234 59 104 chr4 34360649 34361476 -121268644 - RCHARR1 DNA MER1_type -195 779 4 4 847 725 210 14 0 chr4 34361482 34361625 -121268495 + B1_Mur1 SINE Alu 5 149 0 4 847 1449 69 5 26 chr4 34361681 34361875 -121268245 + B2_Mm1a SINE B2 2 191 -2 4 847 23 0 0 0 chr4 34362500 34362523 -121267597 + AT_rich Low_complexity Low_complexity 1 23 0 4 847 2927 143 26 53 chr4 34363154 34363739 -121266381 - RMER4B LTR ERVK 0 585 17 4 847 767 253 68 68 chr4 34364008 34364258 -121265862 + MTD LTR MaLR 4 253 -166 4 847 835 154 18 6 chr4 34364265 34364428 -121265692 - ORR1C2 LTR MaLR -219 165 1 4 847 697 236 51 55 chr4 34364872 34364970 -121265150 - Charlie1a DNA MER1_type -61 1394 1286 4 847 288 0 85 0 chr4 34364970 34365017 -121265103 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 847 697 236 51 55 chr4 34365017 34365210 -121264910 - Charlie1a DNA MER1_type -170 1285 1104 4 847 593 207 26 39 chr4 34365550 34365706 -121264414 + ORR1B1 LTR MaLR 41 194 -200 4 847 2068 122 111 43 chr4 34365774 34366143 -121263977 - ORR1B1 LTR MaLR 0 394 1 4 847 1005 153 27 16 chr4 34366359 34366513 -121263607 + B2_Mm2 SINE B2 6 159 -36 4 847 183 42 0 0 chr4 34366513 34366537 -121263583 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 4 847 1005 153 27 16 chr4 34366537 34366568 -121263552 + B2_Mm2 SINE B2 160 193 -2 4 847 208 128 51 0 chr4 34368167 34368206 -121261914 + A-rich Low_complexity Low_complexity 2 42 0 4 847 21 36 0 0 chr4 34368703 34368731 -121261389 + AT_rich Low_complexity Low_complexity 1 28 0 4 847 22 0 0 0 chr4 34369846 34369868 -121260252 + AT_rich Low_complexity Low_complexity 1 22 0 4 847 26 50 0 0 chr4 34369940 34369980 -121260140 + AT_rich Low_complexity Low_complexity 1 40 0 4 847 209 204 0 0 chr4 34370845 34370894 -121259226 + T-rich Low_complexity Low_complexity 4 52 0 4 847 248 196 0 0 chr4 34370929 34370975 -121259145 - PB1D10 SINE Alu -29 88 43 4 847 300 304 48 8 chr4 34371028 34371154 -121258966 - B1F SINE Alu -17 132 2 4 847 339 184 0 0 chr4 34371401 34371488 -121258632 + GA-rich Low_complexity Low_complexity 4 90 0 4 847 21 0 0 0 chr4 34371969 34371990 -121258130 + AT_rich Low_complexity Low_complexity 1 21 0 4 847 569 301 0 0 chr4 34372168 34372314 -121257806 - B1F2 SINE Alu -1 148 3 5 847 674 195 0 0 chr4 34372355 34372473 -121257647 - PB1D9 SINE Alu 0 120 3 5 847 248 259 17 33 chr4 34372518 34372578 -121257542 + RSINE1 SINE B4 6 64 -101 5 847 1036 209 239 50 chr4 34372630 34373069 -121257051 + RMER4B LTR ERVK 56 577 -8 5 847 1376 65 27 5 chr4 34373444 34373629 -121256491 + B2_Mm1a SINE B2 2 190 -3 5 847 309 303 0 0 chr4 34373693 34373769 -121256351 + RSINE1 SINE B4 90 165 0 5 847 273 143 0 0 chr4 34373819 34373861 -121256259 + B3 SINE B2 4 45 -171 5 847 8651 25 1 0 chr4 34373861 34375001 -121255119 - L1Md_T LINE L1 -2 6580 5440 5 847 582 235 82 70 chr4 34375522 34375570 -121254550 + RLTR15 LTR ERVK 3 53 -306 5 847 423 0 0 0 chr4 34375570 34375617 -121254503 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 847 582 235 82 70 chr4 34375617 34375838 -121254282 + RLTR15 LTR ERVK 54 275 -84 5 847 699 187 35 21 chr4 34375929 34376071 -121254049 - B1_Mur2 SINE Alu -1 148 5 5 847 288 0 0 0 chr4 34376658 34376690 -121253430 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 847 288 310 54 12 chr4 34377426 34377544 -121252576 - MIRb SINE MIR -78 190 68 5 847 584 233 56 68 chr4 34378155 34378316 -121251804 - RSINE1 SINE B4 -4 161 3 5 847 7747 57 4 22 chr4 34380059 34381130 -121248990 + L1_Mus2 LINE L1 5516 6564 -2 5 847 27 0 0 26 chr4 34381130 34381154 -121248966 + AT_rich Low_complexity Low_complexity 1 24 0 5 847 300 211 13 0 chr4 34381154 34381230 -121248890 + Lx6 LINE L1 7380 7456 -4 5 847 27 0 0 26 chr4 34381230 34381243 -121248877 + AT_rich Low_complexity Low_complexity 1 13 0 5 847 299 198 65 11 chr4 34381552 34381644 -121248476 + HY1 scRNA scRNA 11 107 -5 5 847 2957 40 35 13 chr4 34381779 34382154 -121247966 - L1Md_F3 LINE L1 0 6584 6202 5 847 551 315 157 18 chr4 34382360 34382852 -121247268 - Charlie1a DNA MER1_type -258 1197 638 5 847 2136 165 110 21 chr4 34382906 34383371 -121246749 + RMER5 LTR ERV1 29 534 0 5 847 296 316 11 0 chr4 34383807 34383902 -121246218 + PB1D10 SINE Alu 3 98 -19 5 847 459 123 0 0 chr4 34383908 34383989 -121246131 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5 847 2238 205 69 42 chr4 34384576 34385125 -121244995 - RMER1B Other Other -85 981 418 5 847 1079 256 21 36 chr4 34386544 34386876 -121243244 - RMER5 LTR ERV1 -159 375 49 5 847 198 136 0 0 chr4 34387273 34387317 -121242803 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 847 556 172 20 10 chr4 34387317 34387417 -121242703 - B1_Mur3 SINE Alu -1 148 48 5 847 8481 74 12 4 chr4 34387417 34389264 -121240856 + L1_Mus1 LINE L1 4703 6565 -2 5 847 323 211 0 0 chr4 34389285 34389342 -121240778 - B1_Mus2 SINE Alu -90 57 1 5 847 244 270 0 0 chr4 34389372 34389435 -121240685 + B1F SINE Alu 1 63 -86 5 847 1347 62 0 0 chr4 34389435 34389613 -121240507 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 847 288 77 0 0 chr4 34389613 34389652 -121240468 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 5 847 335 134 93 15 chr4 34389678 34389755 -121240365 + ORR1D1 LTR MaLR 301 384 0 5 847 2064 195 57 43 chr4 34389762 34390250 -121239870 + ORR1D1-int LTR MaLR 12 506 -864 5 847 39360 6 0 0 chr4 34390250 34395781 -121234339 + L1Md_A LINE L1 56 5586 -297 5 847 9239 1 0 0 chr4 34395781 34396777 -121233343 + L1Md_A LINE L1 5587 6582 0 5 847 39360 211 29 6 chr4 34396777 34396839 -121233281 + L1Md_A LINE L1 5587 5690 -490 5 847 2779 219 92 28 chr4 34396841 34397630 -121232490 + ORR1D1-int LTR MaLR 530 1369 -1 5 847 1098 179 99 71 chr4 34397633 34397916 -121232204 + ORR1D1 LTR MaLR 3 293 -81 5 847 411 259 21 41 chr4 34397915 34398060 -121232060 - RMER13A LTR ERVK -718 142 1 5 847 198 0 0 0 chr4 34398328 34398350 -121231770 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 5 847 408 192 265 44 chr4 34398350 34398486 -121231634 - B3 SINE B2 -16 200 35 5 847 189 0 0 0 chr4 34398518 34398539 -121231581 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 5 847 798 139 14 21 chr4 34398541 34398681 -121231439 - B1_Mus1 SINE Alu 0 148 10 5 847 511 267 0 0 chr4 34399269 34399385 -121230735 + RSINE1 SINE B4 19 134 -31 5 847 1995 180 29 21 chr4 34399560 34399946 -121230174 - Lx5 LINE L1 -4 7046 6658 5 847 11063 143 29 2 chr4 34399946 34401737 -121228383 - L1_Mur2 LINE L1 -61 5816 3979 5 847 366 42 25 0 chr4 34401737 34401797 -121228323 - ORR1A3 LTR MaLR 0 327 262 5 847 1342 130 5 0 chr4 34401798 34402021 -121228099 + L1_Mur2 LINE L1 1567 1790 -4087 5 847 239 108 0 26 chr4 34402019 34402057 -121228063 - L1_Mur2 LINE L1 -3441 2445 2409 5 847 537 164 19 0 chr4 34402096 34402200 -121227920 - L1_Mur2 LINE L1 -3476 2401 2296 5 847 1546 131 56 13 chr4 34402194 34402548 -121227572 - L1_Mur2 LINE L1 -4321 1556 1172 5 847 2716 47 3 6 chr4 34402553 34402914 -121227206 + MTA_Mm LTR MaLR 37 396 0 5 847 344 181 0 14 chr4 34402914 34402987 -121227133 - L1_Mur2 LINE L1 -5981 1105 1034 5 847 410 313 33 5 chr4 34402984 34403199 -121226921 - L1_Mur2 LINE L1 -6337 749 529 5 847 515 261 48 21 chr4 34403454 34403599 -121226521 + B3A SINE B2 12 160 -38 5 847 255 171 0 0 chr4 34403636 34403712 -121226408 + T-rich Low_complexity Low_complexity 1 76 0 5 847 434 94 57 0 chr4 34403730 34403836 -121226284 + (GTTTG)n Simple_repeat Simple_repeat 2 113 0 5 847 29 28 0 0 chr4 34405063 34405099 -121225021 + AT_rich Low_complexity Low_complexity 1 36 0 5 847 21 0 0 0 chr4 34405467 34405488 -121224632 + AT_rich Low_complexity Low_complexity 1 21 0 5 847 629 318 119 42 chr4 34405497 34405924 -121224196 - MLT1E3 LTR MaLR -52 572 113 5 847 809 177 143 0 chr4 34405982 34406157 -121223963 + B3 SINE B2 1 200 -16 5 847 405 0 0 0 chr4 34406157 34406202 -121223918 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 5 847 1966 135 68 81 chr4 34406208 34406603 -121223517 + ORR1B1 LTR MaLR 1 390 -4 5 847 449 260 9 9 chr4 34406603 34406714 -121223406 + B1_Mur1 SINE Alu 8 117 -32 5 847 1822 84 8 19 chr4 34406707 34406760 -121223360 - ORR1A2 LTR MaLR -9 318 270 5 847 3102 61 8 8 chr4 34406760 34407156 -121222964 - MTA_Mm LTR MaLR 0 396 1 5 847 1822 84 8 19 chr4 34407156 34407369 -121222751 - ORR1A2 LTR MaLR -58 269 55 5 847 267 79 0 0 chr4 34407874 34407912 -121222208 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 847 901 163 0 0 chr4 34407912 34408053 -121222067 - B1_Mur4 SINE Alu -9 141 1 5 847 860 246 271 0 chr4 34408239 34408527 -121221593 + ORR1D2 LTR MaLR 1 366 -4 5 847 2086 165 46 13 chr4 34408639 34409032 -121221088 - MTC LTR MaLR -5 416 11 5 847 1849 151 65 51 chr4 34409112 34409482 -121220638 + ORR1C1 LTR MaLR 1 375 -3 5 847 419 295 89 59 chr4 34410014 34410216 -121219904 + ID_B1 SINE B4 2 209 -15 5 847 2607 73 0 9 chr4 34410232 34410562 -121219558 + ORR1A2 LTR MaLR 1 327 0 5 847 251 255 200 36 chr4 34410694 34410804 -121219316 + B1F SINE Alu 1 128 -21 5 847 279 315 0 14 chr4 34410825 34410899 -121219221 + ID4 SINE ID 1 73 -10 5 847 233 345 11 22 chr4 34410899 34410914 -121219206 + ID SINE ID 1 88 -136 5 847 1315 182 42 4 chr4 34411134 34411300 -121218820 + ORR1D1 LTR MaLR 1 165 -209 5 847 432 0 0 0 chr4 34411300 34411348 -121218772 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 847 1315 182 42 4 chr4 34411348 34411440 -121218680 + ORR1D1 LTR MaLR 166 267 -107 5 847 1517 247 150 42 chr4 34411860 34412427 -121217693 + Lx7 LINE L1 6203 6830 -866 5 847 456 201 0 78 chr4 34412453 34412896 -121217224 + C-rich Low_complexity Low_complexity 1 408 0 5 847 267 272 17 56 chr4 34412766 34412945 -121217175 + CT-rich Low_complexity Low_complexity 3 174 0 5 847 1536 282 56 4 chr4 34412970 34413437 -121216683 + Lx7 LINE L1 6818 7308 -388 5 847 244 321 105 37 chr4 34414135 34414326 -121215794 + MamRep137 DNA TcMar? 1 204 -240 5 847 838 201 59 44 chr4 34414333 34414536 -121215584 + B3 SINE B2 3 208 -8 5 847 22 0 0 0 chr4 34414556 34414578 -121215542 + AT_rich Low_complexity Low_complexity 1 22 0 5 847 24 0 0 0 chr4 34415643 34415667 -121214453 + AT_rich Low_complexity Low_complexity 1 24 0 5 847 288 77 0 0 chr4 34415720 34415759 -121214361 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 847 1159 29 0 7 chr4 34415866 34416004 -121214116 + B1_Mm SINE Alu 1 137 -10 5 847 218 57 0 54 chr4 34416480 34416517 -121213603 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 5 847 1341 276 18 57 chr4 34417310 34417871 -121212249 - Lx7 LINE L1 -16 7680 6952 5 847 1220 221 67 50 chr4 34417884 34418184 -121211936 + Lx7 LINE L1 6612 6916 -780 5 847 354 224 11 0 chr4 34418707 34418786 -121211334 + B1F2 SINE Alu 11 96 -24 5 847 3089 169 119 18 chr4 34418942 34419557 -121210563 + RLTR33 LTR ERVK 2 678 0 5 847 243 170 0 0 chr4 34419557 34419604 -121210516 + B1_Mur2 SINE Alu 97 143 -6 5 847 269 214 14 28 chr4 34420082 34420154 -121209966 - PB1D10 SINE Alu -14 103 33 5 847 4593 121 24 16 chr4 34420537 34421286 -121208834 + RMER6A LTR ERVK 1 755 -1 5 847 321 47 0 0 chr4 34422059 34422102 -121208018 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 847 1138 223 5 9 chr4 34422217 34422430 -121207690 - B3 SINE B2 -4 212 1 5 847 423 0 0 0 chr4 34424323 34424370 -121205750 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 847 591 325 86 35 chr4 34424609 34425014 -121205106 + Lx8 LINE L1 7046 7471 -2 5 847 415 219 67 0 chr4 34425421 34425526 -121204594 + ID_B1 SINE B4 80 191 -33 5 847 457 244 11 0 chr4 34425521 34425611 -121204509 + RSINE1 SINE B4 34 124 -41 5 847 4517 38 8 4 chr4 34426036 34426571 -121203549 - L1Md_F2 LINE L1 -3 6579 6043 5 847 262 320 31 0 chr4 34426746 34426843 -121203277 + L1MC4a LINE L1 7670 7769 -113 5 847 889 244 116 33 chr4 34427343 34427793 -121202327 + L1_Rod LINE L1 443 737 -6871 5 847 1730 188 56 5 chr4 34427846 34428237 -121201883 + L1_Rod LINE L1 883 1293 -6315 5 847 939 145 51 10 chr4 34428234 34428429 -121201691 + L1_Rod LINE L1 1530 1732 -4115 5 847 233 211 32 32 chr4 34428458 34428551 -121201569 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 847 6175 236 45 9 chr4 34428551 34429917 -121200203 + Lx6 LINE L1 6043 7457 -3 5 847 30 27 0 0 chr4 34429982 34430019 -121200101 + AT_rich Low_complexity Low_complexity 1 37 0 5 847 1097 299 40 21 chr4 34430576 34430948 -121199172 + MTE2b LTR MaLR 1 379 0 5 847 323 257 114 8 chr4 34431237 34431351 -121198769 + B1F SINE Alu 2 110 -39 5 847 267 246 27 14 chr4 34432215 34432289 -121197831 - LTR77 LTR ERV1 -34 588 514 6 847 611 209 133 13 chr4 34432457 34432729 -121197391 - MTD LTR MaLR 0 419 79 6 847 1186 191 66 12 chr4 34432731 34432975 -121197145 - ORR1B1 LTR MaLR 0 394 138 6 847 883 144 7 7 chr4 34433760 34433907 -121196213 - ORR1B1 LTR MaLR -239 155 9 6 847 189 0 0 0 chr4 34433907 34433928 -121196192 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 847 2876 44 97 0 chr4 34434072 34434433 -121195687 - MTA_Mm LTR MaLR 0 396 1 6 847 317 140 0 0 chr4 34435060 34435110 -121195010 - L1_Rod LINE L1 -3615 2232 2183 6 847 1936 163 28 8 chr4 34435110 34435462 -121194658 + ORR1B2 LTR MaLR 1 359 -8 6 847 1288 164 56 14 chr4 34435525 34435577 -121194543 - L1_Rod LINE L1 -4349 1498 1445 6 847 217 48 23 45 chr4 34435577 34435621 -121194499 + (TTG)n Simple_repeat Simple_repeat 2 44 0 6 847 4303 200 31 14 chr4 34435621 34436604 -121193516 - L1_Rod LINE L1 -4403 1444 443 6 847 357 331 64 17 chr4 34436672 34436844 -121193276 - L1_Rod LINE L1 -6927 245 66 6 847 405 109 0 0 chr4 34437022 34437086 -121193034 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 847 810 161 15 0 chr4 34437087 34437217 -121192903 - B1_Mus1 SINE Alu -12 136 5 6 847 240 43 43 21 chr4 34437445 34437492 -121192628 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 6 847 7740 104 26 25 chr4 34438031 34439301 -121190819 - L1_Mus1 LINE L1 0 6567 5217 6 847 2311 245 52 14 chr4 34439300 34439950 -121190170 - L1_Mur3 LINE L1 -581 5299 4625 6 847 267 304 36 0 chr4 34440832 34440944 -121189176 + MIR SINE MIR 123 238 -24 6 847 292 267 10 14 chr4 34441120 34441217 -121188903 - ID4 SINE ID -49 103 11 6 847 264 59 0 0 chr4 34441426 34441460 -121188660 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 847 544 221 38 19 chr4 34442023 34442181 -121187939 + B3 SINE B2 5 172 -23 6 847 452 242 345 0 chr4 34442587 34442752 -121187368 - ID_B1 SINE B4 0 224 3 6 847 1571 208 46 14 chr4 34442797 34443143 -121186977 + Lx2B LINE L1 6156 6512 -488 6 847 1970 125 46 119 chr4 34443145 34443598 -121186522 + RLTR24 LTR ERV1 108 527 -2 6 847 1076 28 14 7 chr4 34443961 34444104 -121186016 - L1Md_F3 LINE L1 -3 6581 6438 6 847 1733 20 0 10 chr4 34444104 34444303 -121185817 + L1Md_F3 LINE L1 5991 6187 -397 6 847 429 20 0 0 chr4 34444667 34444717 -121185403 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 6 847 971 157 0 6 chr4 34444717 34444897 -121185223 + GA-rich Low_complexity Low_complexity 2 180 0 6 847 355 310 17 17 chr4 34447392 34447510 -121182610 - RSINE1 SINE B4 -44 121 4 6 847 2677 43 9 6 chr4 34447766 34448092 -121182028 - IAPLTR2b LTR ERVK 0 327 1 6 847 53251 34 15 9 chr4 34448094 34454329 -121175791 - IAPEz-int LTR ERVK -2 6479 211 6 847 914 68 8 0 chr4 34454329 34454446 -121175674 - IAPEz-int LTR ERVK -6196 285 168 6 847 226 327 0 0 chr4 34454446 34454501 -121175619 - RLTR27 LTR ERVK -34 275 221 6 847 1135 115 10 80 chr4 34454501 34454700 -121175420 - IAPEz-int LTR ERVK -6288 193 9 6 847 2665 46 9 6 chr4 34454701 34455027 -121175093 - IAPLTR2b LTR ERVK 0 327 1 6 847 263 198 0 44 chr4 34455950 34456002 -121174118 + T-rich Low_complexity Low_complexity 40 89 0 6 847 1375 96 32 0 chr4 34456002 34456190 -121173930 - B2_Mm2 SINE B2 0 195 2 6 847 263 198 0 44 chr4 34456190 34456227 -121173893 + T-rich Low_complexity Low_complexity 5 39 0 6 847 999 144 15 46 chr4 34456793 34456989 -121173131 - B2_Mm2 SINE B2 -5 190 1 6 847 684 274 50 16 chr4 34457001 34457183 -121172937 - B3A SINE B2 -9 189 2 6 847 257 191 50 34 chr4 34457194 34457313 -121172807 + (TTTA)n Simple_repeat Simple_repeat 3 123 0 6 847 1224 87 6 0 chr4 34457318 34457490 -121172630 - B2_Mm2 SINE B2 -20 175 3 6 847 4007 297 94 35 chr4 34457651 34457915 -121172205 - Lx8 LINE L1 -190 7283 6998 6 847 1700 26 0 0 chr4 34457915 34458107 -121172013 - B2_Mm1a SINE B2 -1 192 1 6 847 4007 278 110 29 chr4 34458107 34459802 -121170318 - Lx8 LINE L1 -476 6997 5168 6 847 683 230 20 56 chr4 34459908 34460106 -121170014 - Lx8 LINE L1 -1715 4165 3975 6 847 4489 14 2 0 chr4 34460113 34460605 -121169515 + MT2_Mm LTR ERVL 1 493 0 6 847 41502 15 14 0 chr4 34460605 34465892 -121164228 + MERVL-int LTR ERVL 1 5360 -125 6 847 362 167 46 35 chr4 34465892 34465979 -121164141 + ORR1A3-int LTR MaLR 553 640 -1323 6 847 321 0 0 0 chr4 34465979 34466017 -121164103 + MERVL-int LTR ERVL 5448 5485 0 6 847 4489 14 2 0 chr4 34466017 34466509 -121163611 + MT2_Mm LTR ERVL 1 493 0 6 847 1857 246 90 22 chr4 34466527 34467130 -121162990 - Lx8 LINE L1 -1917 3963 3320 6 847 1352 226 37 12 chr4 34467129 34467456 -121162664 - Lx6 LINE L1 -26 7434 7100 6 847 4084 238 71 76 chr4 34467441 34467491 -121162629 - Lx8 LINE L1 -2592 3288 3228 6 847 489 34 0 0 chr4 34467491 34467550 -121162570 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 847 4084 238 71 76 chr4 34467550 34468555 -121161565 - Lx8 LINE L1 -2653 3227 2201 6 847 1073 88 0 39 chr4 34468555 34468708 -121161412 + B1_Mus2 SINE Alu 1 147 0 6 847 4084 238 71 76 chr4 34468708 34469222 -121160898 - Lx8 LINE L1 -3680 2200 1727 6 847 293 0 27 0 chr4 34469439 34469476 -121160644 + (TTATA)n Simple_repeat Simple_repeat 4 41 0 6 847 274 308 58 58 chr4 34469740 34469878 -121160242 - B1_Mus1 SINE Alu 0 148 11 6 847 234 0 0 0 chr4 34470522 34470548 -121159572 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 847 988 193 48 33 chr4 34471414 34471685 -121158435 + RMER10B LTR ERVL 136 396 -2 6 848 374 298 97 42 chr4 34472182 34472420 -121157700 + RLTR18 LTR ERVK 31 281 -335 6 848 1579 165 199 6 chr4 34472820 34473161 -121156959 - MTB_Mm LTR MaLR 0 407 1 6 848 315 0 0 0 chr4 34473298 34473333 -121156787 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 6 848 427 280 84 32 chr4 34473342 34473353 -121156767 - RSINE1 SINE B4 0 165 156 6 848 258 32 0 0 chr4 34473353 34473384 -121156736 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 848 427 280 84 32 chr4 34473384 34473527 -121156593 - RSINE1 SINE B4 -10 155 3 6 848 314 315 54 30 chr4 34473534 34473701 -121156419 - L1M5 LINE L1 -641 5483 5313 6 848 285 232 174 0 chr4 34473908 34473977 -121156143 - PB1D10 SINE Alu -32 85 5 6 848 347 286 0 0 chr4 34474003 34474094 -121156026 - BC1_Mm scRNA scRNA -53 99 9 6 848 1303 194 132 6 chr4 34474490 34474655 -121155465 + ORR1D1 LTR MaLR 1 166 -208 6 848 441 0 0 0 chr4 34474655 34474704 -121155416 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 848 1303 194 132 6 chr4 34474704 34474870 -121155250 + ORR1D1 LTR MaLR 167 373 -1 6 848 1008 194 132 8 chr4 34474908 34475140 -121154980 - MTC LTR MaLR -8 413 153 6 848 1608 137 92 106 chr4 34475140 34475508 -121154612 - ORR1B1 LTR MaLR 0 394 32 6 848 593 158 108 0 chr4 34475498 34475618 -121154502 - MTC LTR MaLR -284 137 5 6 848 307 273 56 49 chr4 34476291 34476453 -121153667 - MIR SINE MIR -55 207 45 6 848 285 208 0 0 chr4 34476686 34476739 -121153381 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 6 848 1205 244 31 86 chr4 34476739 34477125 -121152995 - MTC LTR MaLR -47 374 10 6 848 298 263 97 0 chr4 34477720 34477834 -121152286 - L1MA7 LINE L1 -12 6279 6155 6 848 1442 99 0 0 chr4 34477873 34478064 -121152056 - B2_Mm1t SINE B2 -1 192 2 6 848 1401 99 5 10 chr4 34478066 34478260 -121151860 - B2_Mm2 SINE B2 -1 194 2 6 848 768 96 20 0 chr4 34478321 34478467 -121151653 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 6 848 905 246 31 0 chr4 34478524 34478715 -121151405 + B3 SINE B2 1 197 -19 6 848 410 226 98 20 chr4 34478723 34478926 -121151194 - Charlie1b DNA MER1_type -126 397 179 6 848 319 140 0 0 chr4 34479400 34479450 -121150670 - PB1D9 SINE Alu -70 50 1 6 848 242 183 129 35 chr4 34479472 34479557 -121150563 - MER113 DNA MER1_type -105 416 324 6 848 395 225 222 14 chr4 34479588 34479732 -121150388 + B3 SINE B2 2 175 -41 6 848 784 131 57 14 chr4 34480289 34480429 -121149691 + B1_Mur4 SINE Alu 5 150 0 6 848 372 320 16 0 chr4 34480585 34480713 -121149407 - B4A SINE B4 -91 201 72 6 848 360 156 0 0 chr4 34480876 34480940 -121149180 + B1F1 SINE Alu 68 131 -18 6 848 180 0 0 0 chr4 34480946 34480966 -121149154 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 848 296 213 49 0 chr4 34480967 34481028 -121149092 - B3 SINE B2 -18 198 135 6 848 1272 102 38 0 chr4 34481273 34481459 -121148661 + B2_Mm1t SINE B2 1 193 0 6 848 610 295 114 15 chr4 34481465 34481727 -121148393 - B4A SINE B4 -4 288 1 6 848 189 0 0 0 chr4 34481887 34481908 -121148212 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 848 849 69 0 0 chr4 34482280 34482396 -121147724 + B1_Mus2 SINE Alu 1 116 -31 6 848 2976 27 0 0 chr4 34482396 34482733 -121147387 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 848 57508 15 17 1 chr4 34482733 34489108 -121141012 - IAPEz-int LTR ERVK 0 6481 8 6 848 2976 27 0 0 chr4 34489108 34489445 -121140675 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 848 245 81 0 0 chr4 34489445 34489482 -121140638 + B1_Mur4 SINE Alu 114 150 0 6 848 279 0 0 0 chr4 34490404 34490435 -121139685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 848 3512 23 2 2 chr4 34490449 34490845 -121139275 + MTA_Mm LTR MaLR 1 396 0 6 848 225 224 39 48 chr4 34491629 34491732 -121138388 - MER53 DNA hAT -91 102 1 6 848 261 0 0 0 chr4 34492116 34492145 -121137975 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 848 261 146 0 0 chr4 34492145 34492193 -121137927 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 848 235 206 95 0 chr4 34492588 34492651 -121137469 + Tigger5 DNA MER2_type 2308 2376 -30 6 848 228 35 0 0 chr4 34492889 34492918 -121137202 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 848 1264 107 6 0 chr4 34493098 34493276 -121136844 + B2_Mm1t SINE B2 1 179 -14 6 848 354 96 313 17 chr4 34493308 34493423 -121136697 + B2_Mm2 SINE B2 47 195 0 6 848 720 159 31 8 chr4 34493583 34493710 -121136410 + B3 SINE B2 1 130 -86 6 848 672 92 266 0 chr4 34494154 34494263 -121135857 - B1_Mus1 SINE Alu -10 138 1 6 848 1299 164 92 83 chr4 34494497 34494724 -121135396 - ORR1C2 LTR MaLR -1 383 150 6 848 1445 84 5 0 chr4 34494724 34494914 -121135206 + B2_Mm1a SINE B2 2 192 -1 6 848 1299 164 92 83 chr4 34494914 34495012 -121135108 - ORR1C2 LTR MaLR -235 149 55 6 848 944 55 24 0 chr4 34495260 34495387 -121134733 + L1_Mus1 LINE L1 6438 6567 0 6 848 643 248 89 164 chr4 34495558 34495678 -121134442 + ORR1D1 LTR MaLR 3 126 -248 6 848 324 0 0 0 chr4 34495678 34495714 -121134406 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 848 369 0 0 0 chr4 34495714 34495754 -121134366 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 848 643 248 89 164 chr4 34495754 34496023 -121134097 + ORR1D1 LTR MaLR 127 363 -11 6 848 489 288 15 53 chr4 34496475 34496607 -121133513 + ID_B1 SINE B4 61 187 -37 6 848 305 315 0 133 chr4 34496501 34496629 -121133491 + PB1D10 SINE Alu 7 117 0 6 848 198 0 0 0 chr4 34497622 34497644 -121132476 + (T)n Simple_repeat Simple_repeat 1 22 0 7 848 21 82 0 0 chr4 34498110 34498159 -121131961 + GC_rich Low_complexity Low_complexity 1 49 0 7 848 287 141 16 0 chr4 34498398 34498462 -121131658 + (CCG)n Simple_repeat Simple_repeat 3 67 0 7 848 622 186 36 0 chr4 34499855 34499995 -121130125 + URR1B DNA MER1_type 77 221 -4 7 848 207 0 0 0 chr4 34500048 34500071 -121130049 + (T)n Simple_repeat Simple_repeat 1 23 0 1 848 1103 88 0 0 chr4 34500071 34500219 -121129901 - B1_Mus1 SINE Alu 0 148 1 2 848 1107 59 0 0 chr4 34500620 34500756 -121129364 + B1_Mus1 SINE Alu 1 136 -12 3 848 1347 88 2 0 chr4 34500761 34501253 -121128867 + (GA)n Simple_repeat Simple_repeat 1 492 0 4 848 432 231 73 49 chr4 34501873 34502037 -121128083 + MER58B DNA MER1_type 36 203 -138 5 848 320 200 92 13 chr4 34502328 34502404 -121127716 - PB1D9 SINE Alu -34 86 5 6 848 323 265 47 35 chr4 34502342 34502428 -121127692 - ID_B1 SINE B4 -74 150 64 7 848 539 268 276 39 chr4 34502447 34502777 -121127343 - Lx8 LINE L1 -71 7402 6995 8 848 1324 283 83 21 chr4 34502816 34503332 -121126788 - Lx8 LINE L1 -676 6797 6250 8 848 466 308 28 14 chr4 34504389 34504534 -121125586 + RSINE1 SINE B4 1 147 -18 9 848 391 212 120 120 chr4 34505374 34505524 -121124596 - B3A SINE B2 -6 189 40 1 848 302 191 34 12 chr4 34505801 34505871 -121124249 - B1_Mur2 SINE Alu -6 143 77 1 848 263 239 157 11 chr4 34507247 34507336 -121122784 - PB1D9 SINE Alu -12 108 7 1 848 1028 175 92 0 chr4 34507465 34507671 -121122449 + URR1A DNA MER1_type 1 225 -1 1 848 589 281 58 10 chr4 34508311 34508516 -121121604 + B3 SINE B2 2 216 0 1 848 240 224 37 62 chr4 34509336 34509417 -121120703 - B3A SINE B2 0 198 120 1 848 789 234 63 48 chr4 34509950 34510157 -121119963 - B3 SINE B2 -6 210 1 1 848 1259 88 16 11 chr4 34510512 34510695 -121119425 + B2_Mm1t SINE B2 1 184 -9 1 848 1047 86 122 6 chr4 34510704 34510868 -121119252 + B2_Mm1t SINE B2 1 183 -10 1 848 1006 158 392 0 chr4 34512558 34512831 -121117289 - ORR1C2 LTR MaLR 0 384 5 1 848 522 257 45 44 chr4 34514425 34514684 -121115436 - MTE2a LTR MaLR -16 403 59 2 848 401 239 288 0 chr4 34514761 34514924 -121115196 + B3 SINE B2 2 211 -5 2 848 26 50 0 0 chr4 34515059 34515099 -121115021 + AT_rich Low_complexity Low_complexity 1 40 0 2 848 469 248 9 47 chr4 34515128 34515234 -121114886 - B3A SINE B2 -96 102 1 2 848 589 276 76 0 chr4 34515911 34516056 -121114064 - B3A SINE B2 -10 188 33 2 848 314 211 196 69 chr4 34518462 34518564 -121111556 + PB1D9 SINE Alu 1 115 -5 2 848 288 0 0 0 chr4 34518814 34518846 -121111274 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 848 545 246 55 129 chr4 34520757 34520958 -121109162 + B3A SINE B2 6 191 -4 2 848 213 121 0 0 chr4 34521121 34521154 -121108966 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 2 848 227 271 11 131 chr4 34521172 34521266 -121108854 - RSINE1 SINE B4 -207 85 3 2 848 313 232 29 14 chr4 34521302 34521372 -121108748 - ID_B1 SINE B4 -68 156 86 3 848 676 195 41 0 chr4 34521772 34521895 -121108225 + B1_Mur4 SINE Alu 2 129 -21 3 848 348 260 202 0 chr4 34522020 34522124 -121107996 - RSINE1 SINE B4 -30 135 11 3 848 207 69 0 0 chr4 34522453 34522482 -121107638 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 848 276 215 0 30 chr4 34522649 34522716 -121107404 + MT2A LTR ERVL 33 97 -436 3 848 233 320 88 20 chr4 34522907 34523009 -121107111 - PB1D7 SINE Alu -8 112 4 3 848 232 227 72 43 chr4 34524181 34524250 -121105870 + ID2 SINE ID 3 73 -10 3 848 213 354 30 10 chr4 34526299 34526399 -121103721 + MIR SINE MIR 27 128 -80 3 848 324 150 16 16 chr4 34527173 34527234 -121102886 + MTC LTR MaLR 361 421 0 3 848 457 258 104 8 chr4 34527251 34527376 -121102744 + RSINE1 SINE B4 1 137 -28 3 848 288 292 58 63 chr4 34528058 34528248 -121101872 + MIRb SINE MIR 79 267 -1 4 848 225 200 107 132 chr4 34528602 34528723 -121101397 + PB1D7 SINE Alu 3 120 0 4 848 490 293 8 0 chr4 34528846 34528969 -121101151 + ORR1D2 LTR MaLR 8 131 -239 4 848 2449 22 92 3 chr4 34528998 34529314 -121100806 + MTA_Mm LTR MaLR 1 344 -52 4 848 351 140 16 23 chr4 34529372 34529452 -121100668 + MTA_Mm LTR MaLR 297 370 -4 4 848 255 250 0 56 chr4 34529571 34529643 -121100477 + PB1D10 SINE Alu 48 115 -2 4 848 1458 165 41 115 chr4 34529809 34530199 -121099921 + ORR1C2 LTR MaLR 24 384 0 4 848 353 237 26 26 chr4 34530337 34530415 -121099705 - RSINE1 SINE B4 -1 164 87 4 848 394 179 34 56 chr4 34530474 34530563 -121099557 - B4A SINE B4 -58 234 148 4 848 242 183 167 0 chr4 34530569 34530629 -121099491 - B3A SINE B2 -128 70 1 4 848 679 157 95 22 chr4 34534422 34534559 -121095561 - B1_Mur4 SINE Alu 0 150 4 4 848 569 270 95 20 chr4 34534584 34534784 -121095336 + B3 SINE B2 1 215 -1 5 848 806 276 172 6 chr4 34535225 34535567 -121094553 - MTD LTR MaLR -20 399 1 5 848 369 0 0 0 chr4 34535713 34535754 -121094366 + (T)n Simple_repeat Simple_repeat 1 41 0 5 848 304 308 64 56 chr4 34535801 34536052 -121094068 - L1_Mur3 LINE L1 -1985 3895 3643 5 848 1202 55 7 0 chr4 34536085 34536230 -121093890 - B1_Mm SINE Alu 0 147 2 5 848 309 331 139 6 chr4 34536268 34536426 -121093694 - L1M2 LINE L1 -2476 3667 3489 5 848 296 254 136 10 chr4 34536441 34536730 -121093390 - L1M2 LINE L1 -2736 3407 3083 5 848 316 356 101 0 chr4 34536772 34536921 -121093199 + L2b LINE L2 3211 3374 -1 5 848 792 190 7 0 chr4 34537085 34537227 -121092893 + B1_Mm SINE Alu 5 147 0 5 848 26 0 0 0 chr4 34537228 34537254 -121092866 + AT_rich Low_complexity Low_complexity 1 26 0 5 848 2732 53 12 3 chr4 34537300 34537643 -121092477 - ORR1A1 LTR MaLR 0 346 1 5 848 13641 64 7 5 chr4 34537643 34539430 -121090690 - ORR1A1-int LTR MaLR 0 1792 1 5 848 2867 49 0 0 chr4 34539430 34539776 -121090344 - ORR1A1 LTR MaLR 0 346 1 5 848 234 226 0 88 chr4 34540631 34540699 -121089421 - ID_B1 SINE B4 -5 219 158 6 848 221 294 7 193 chr4 34540699 34540764 -121089356 - B1_Mur1 SINE Alu -3 144 37 6 848 1203 41 0 20 chr4 34540990 34541140 -121088980 + B1_Mus2 SINE Alu 1 147 0 6 848 204 122 0 0 chr4 34541143 34541184 -121088936 + (A)n Simple_repeat Simple_repeat 1 41 0 6 848 1003 205 29 0 chr4 34541630 34541840 -121088280 + B3 SINE B2 1 216 0 6 848 22 35 0 0 chr4 34541906 34541935 -121088185 + AT_rich Low_complexity Low_complexity 1 29 0 6 848 41 0 0 0 chr4 34542573 34542614 -121087506 + AT_rich Low_complexity Low_complexity 1 41 0 6 848 251 311 0 13 chr4 34543224 34543299 -121086821 + ID4 SINE ID 5 78 -5 6 848 1174 62 0 0 chr4 34543729 34543874 -121086246 - B1_Mus2 SINE Alu -2 145 1 6 848 1191 61 0 0 chr4 34544117 34544264 -121085856 + B1_Mus1 SINE Alu 1 147 -1 6 848 676 311 72 0 chr4 34546211 34546404 -121083716 + ID_B1 SINE B4 18 224 0 7 848 739 260 122 28 chr4 34547277 34547669 -121082451 + Lx8 LINE L1 4114 4542 -1338 7 848 2021 277 118 24 chr4 34547679 34548986 -121081134 + Lx8 LINE L1 4917 6352 -1121 7 848 728 227 50 0 chr4 34549116 34549257 -121080863 + B1_Mur1 SINE Alu 2 149 0 7 848 296 292 0 0 chr4 34549362 34549427 -121080693 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 7 848 1054 215 44 50 chr4 34549599 34549941 -121080179 + Lx7 LINE L1 5988 6327 -1369 7 848 1349 226 73 68 chr4 34549941 34549968 -121080152 + ORR1D1 LTR MaLR 1 27 -347 7 848 2975 55 36 13 chr4 34549968 34550355 -121079765 + MTA_Mm LTR MaLR 1 396 0 7 848 1349 226 73 68 chr4 34550355 34550697 -121079423 + ORR1D1 LTR MaLR 28 372 -2 7 848 1548 216 237 92 chr4 34550698 34551419 -121078701 + Lx7 LINE L1 6326 7189 -507 7 848 3080 112 112 16 chr4 34551419 34551929 -121078191 + Lx LINE L1 6088 6646 -8 7 848 1548 235 108 130 chr4 34551929 34552198 -121077922 + Lx7 LINE L1 7190 7415 -281 7 848 1216 43 0 0 chr4 34553085 34553226 -121076894 + B1_Mus1 SINE Alu 2 142 -6 7 848 381 235 12 12 chr4 34553819 34553901 -121076219 + B4A SINE B4 5 86 -206 7 848 245 313 79 20 chr4 34553901 34553920 -121076200 + B3 SINE B2 5 111 -105 8 848 222 241 130 0 chr4 34554015 34554069 -121076051 + B1F SINE Alu 88 148 -1 8 848 197 106 0 78 chr4 34554575 34554626 -121075494 + T-rich Low_complexity Low_complexity 1 47 0 8 848 768 68 0 0 chr4 34554628 34554731 -121075389 - B1_Mus2 SINE Alu 0 147 45 8 848 236 224 17 17 chr4 34555047 34555117 -121075003 + CT-rich Low_complexity Low_complexity 1 70 0 8 848 850 159 0 29 chr4 34555121 34555257 -121074863 - B1_Mus1 SINE Alu -7 141 10 8 848 806 189 23 29 chr4 34555273 34555447 -121074673 - B2_Mm2 SINE B2 -22 173 1 8 848 640 195 64 45 chr4 34555478 34555634 -121074486 - B3 SINE B2 -56 160 2 8 848 373 273 58 48 chr4 34556081 34556289 -121073831 + B3 SINE B2 2 211 -5 8 848 380 267 148 34 chr4 34557631 34557840 -121072280 + MIRb SINE MIR 18 250 -18 8 848 1515 84 16 0 chr4 34558032 34558223 -121071897 + B2_Mm2 SINE B2 1 194 -1 9 848 754 113 143 0 chr4 34558458 34558591 -121071529 + B2_Mm1t SINE B2 41 192 -1 9 848 239 271 200 0 chr4 34558899 34558969 -121071151 + B1F SINE Alu 15 98 -51 9 848 243 289 96 43 chr4 34558974 34559068 -121071052 + PB1D7 SINE Alu 3 101 -19 9 848 1590 68 5 0 chr4 34559469 34559659 -121070461 + B2_Mm1t SINE B2 2 192 -1 9 848 570 256 51 0 chr4 34560466 34560603 -121069517 + B1_Mur1 SINE Alu 1 144 -5 9 848 293 270 90 0 chr4 34560607 34560718 -121069402 - Tigger9a DNA Tigger -242 490 370 9 848 258 32 0 0 chr4 34561091 34561122 -121068998 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 9 848 226 291 60 48 chr4 34561674 34561757 -121068363 + L2b LINE L2 3103 3186 -189 9 848 522 263 225 5 chr4 34562646 34562864 -121067256 + B4A SINE B4 2 267 -25 9 848 248 390 37 0 chr4 34562940 34563022 -121067098 + LTR16E1 LTR ERVL 306 390 -148 1 848 410 275 25 112 chr4 34563032 34563192 -121066928 - B4A SINE B4 0 292 147 1 848 1321 279 67 24 chr4 34563758 34564254 -121065866 - RMER5 LTR ERV1 -17 517 1 1 848 336 314 23 45 chr4 34564583 34564712 -121065408 - B4A SINE B4 -80 144 23 1 848 331 239 0 0 chr4 34564836 34564907 -121065213 - Lx9 LINE L1 -579 7065 6995 1 848 429 20 0 0 chr4 34564957 34565007 -121065113 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 848 270 319 0 21 chr4 34565339 34565432 -121064688 + L2a LINE L2 3331 3421 -5 1 848 493 264 92 9 chr4 34565526 34565744 -121064376 - L1ME1 LINE L1 -151 6028 5793 1 848 407 295 77 57 chr4 34566385 34566579 -121063541 + MER2 DNA MER2_type 49 246 -99 1 848 807 221 20 7 chr4 34566836 34566982 -121063138 + B1_Mur2 SINE Alu 2 149 0 1 848 222 233 0 0 chr4 34566982 34567042 -121063078 + A-rich Low_complexity Low_complexity 1 60 0 1 848 504 48 0 0 chr4 34567422 34567485 -121062635 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 848 276 53 0 0 chr4 34567485 34567522 -121062598 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 848 845 179 27 14 chr4 34567759 34567906 -121062214 - B1_Mur3 SINE Alu 0 149 1 1 848 243 253 187 0 chr4 34568488 34568563 -121061557 - MIR SINE MIR -82 180 92 1 848 800 215 14 20 chr4 34568684 34568831 -121061289 + B1_Mus2 SINE Alu 2 147 0 1 848 1878 213 106 35 chr4 34568892 34569437 -121060683 - Lx9 LINE L1 0 7644 7061 1 848 333 240 274 0 chr4 34569580 34569755 -121060365 - Lx7 LINE L1 -330 7366 7144 1 848 619 116 188 0 chr4 34570188 34570300 -121059820 + B1_Mm SINE Alu 14 146 -1 1 848 210 71 0 0 chr4 34570306 34570334 -121059786 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 848 994 261 165 17 chr4 34570941 34571271 -121058849 - MTD LTR MaLR -14 405 23 1 848 844 174 65 0 chr4 34571360 34571498 -121058622 - B1_Mus1 SINE Alu 0 148 2 1 848 331 214 45 80 chr4 34571538 34571650 -121058470 - B3 SINE B2 -108 108 1 1 848 188 35 35 0 chr4 34572080 34572109 -121058011 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 848 212 250 0 18 chr4 34572912 34572969 -121057151 - ID4 SINE ID -26 57 2 1 848 259 315 11 53 chr4 34573109 34573203 -121056917 + L2b LINE L2 3286 3375 0 1 848 1136 112 44 11 chr4 34573891 34574071 -121056049 - B2_Mm2 SINE B2 -8 187 2 1 848 4683 78 18 3 chr4 34574197 34574800 -121055320 - L1_Mus3 LINE L1 -2 6636 6025 1 848 1470 58 29 0 chr4 34575502 34575674 -121054446 - B2_Mm2 SINE B2 -17 178 2 1 848 659 257 34 0 chr4 34576271 34576419 -121053701 + Lx8 LINE L1 7194 7346 -127 1 848 316 283 19 48 chr4 34576420 34576524 -121053596 - PB1D10 SINE Alu -11 106 6 1 848 716 198 185 11 chr4 34576653 34576837 -121053283 + B3 SINE B2 1 216 0 1 848 289 264 75 67 chr4 34577155 34577289 -121052831 - ID_B1 SINE B4 -76 148 14 1 848 180 0 0 0 chr4 34577672 34577692 -121052428 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 848 361 184 143 0 chr4 34578022 34578120 -121052000 - PB1D10 SINE Alu 0 117 6 1 848 350 223 132 18 chr4 34578052 34578166 -121051954 - ID_B1 SINE B4 -60 164 38 1 848 277 281 91 30 chr4 34578188 34578287 -121051833 - RSINE1 SINE B4 -58 107 3 1 848 186 71 0 0 chr4 34578298 34578326 -121051794 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 848 737 90 0 0 chr4 34578395 34578495 -121051625 + B1_Mus2 SINE Alu 48 147 0 1 848 379 266 138 65 chr4 34578680 34578897 -121051223 - B4 SINE B4 -7 285 53 1 848 180 0 0 0 chr4 34578959 34578979 -121051141 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 848 1068 127 7 0 chr4 34578985 34579127 -121050993 - B1_Mus2 SINE Alu 0 147 5 1 848 814 270 18 77 chr4 34579422 34579707 -121050413 - B4 SINE B4 -18 274 7 1 848 441 268 10 0 chr4 34580110 34580207 -121049913 - RCHARR1 DNA MER1_type -759 215 118 1 848 485 276 139 35 chr4 34580251 34580280 -121049840 - RCHARR1 DNA MER1_type -9 965 937 1 848 482 238 150 27 chr4 34580280 34580427 -121049693 - RSINE1 SINE B4 0 165 1 1 848 485 276 139 35 chr4 34580427 34580656 -121049464 - RCHARR1 DNA MER1_type -38 936 681 1 848 217 51 51 0 chr4 34581444 34581483 -121048637 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 848 219 69 0 0 chr4 34581485 34581514 -121048606 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 848 459 225 27 61 chr4 34581522 34581669 -121048451 - B3A SINE B2 -48 150 9 1 848 637 254 14 0 chr4 34582665 34582807 -121047313 - B1F1 SINE Alu 0 149 6 1 848 495 0 0 0 chr4 34583625 34583680 -121046440 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 848 707 215 8 0 chr4 34583701 34583831 -121046289 - B3A SINE B2 -67 131 1 1 848 27 0 0 0 chr4 34584055 34584082 -121046038 + AT_rich Low_complexity Low_complexity 1 27 0 1 848 785 225 133 25 chr4 34585075 34585399 -121044721 - RLTR15 LTR ERVK 0 359 1 1 848 236 310 28 0 chr4 34585427 34585498 -121044622 + L2c LINE L2 3262 3334 -53 1 848 1769 191 69 52 chr4 34586871 34587275 -121042845 + MTD LTR MaLR 9 419 0 1 848 1394 224 31 19 chr4 34587302 34587625 -121042495 - MERVL_2A-int LTR ERVL -2457 3304 2978 1 848 1164 219 43 74 chr4 34587660 34588010 -121042110 + MTC-int LTR MaLR 19 357 -901 1 848 667 201 60 25 chr4 34588020 34588269 -121041851 - MTC LTR MaLR -137 284 1 1 848 487 243 97 0 chr4 34588701 34588804 -121041316 - B3 SINE B2 -103 113 1 1 848 1297 34 7 0 chr4 34588914 34589060 -121041060 - B1_Mm SINE Alu 0 147 1 1 848 954 167 82 19 chr4 34589069 34589288 -121040832 - ORR1D1 LTR MaLR 0 384 152 1 848 856 182 13 40 chr4 34589300 34589449 -121040671 - B1_Mur4 SINE Alu -2 148 4 1 848 236 192 115 0 chr4 34589555 34589607 -121040513 - B4 SINE B4 -102 190 133 1 848 973 243 140 57 chr4 34589681 34590017 -121040103 + MTE2b LTR MaLR 1 364 -15 1 848 25 0 0 0 chr4 34591256 34591281 -121038839 + AT_rich Low_complexity Low_complexity 1 25 0 1 848 324 0 0 0 chr4 34591435 34591471 -121038649 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 848 465 268 58 17 chr4 34593882 34593918 -121036202 - B4 SINE B4 -59 233 134 1 848 654 125 29 0 chr4 34593918 34594022 -121036098 - B1_Mus1 SINE Alu -40 108 2 1 848 465 268 58 17 chr4 34594022 34594043 -121036077 - B4 SINE B4 -59 133 69 1 848 393 188 20 59 chr4 34594112 34594214 -121035906 + PB1D9 SINE Alu 5 102 -18 1 848 223 346 25 0 chr4 34594239 34594320 -121035800 + PB1D10 SINE Alu 2 84 -33 1 848 269 311 27 0 chr4 34595751 34595825 -121034295 - ID4_ SINE ID -5 78 3 1 848 2473 108 60 33 chr4 34595961 34596064 -121034056 - Lx3B LINE L1 -5 6968 6878 1 848 198 0 0 0 chr4 34596064 34596086 -121034034 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 848 2473 108 60 33 chr4 34596086 34596346 -121033774 - Lx3B LINE L1 -96 6877 6597 1 848 369 174 0 0 chr4 34596466 34596535 -121033585 + (CATA)n Simple_repeat Simple_repeat 2 70 0 1 848 523 256 40 0 chr4 34596632 34596757 -121033363 + B1_Mur1 SINE Alu 6 135 -14 1 848 813 194 0 0 chr4 34596769 34596934 -121033186 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 1 848 318 289 98 86 chr4 34597560 34597723 -121032397 + RSINE1 SINE B4 1 165 0 1 848 281 176 39 0 chr4 34598069 34598120 -121032000 + B3 SINE B2 143 195 -21 1 848 327 78 0 0 chr4 34598121 34598172 -121031948 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 848 22 35 0 0 chr4 34598289 34598318 -121031802 + AT_rich Low_complexity Low_complexity 1 29 0 1 848 263 316 13 0 chr4 34598463 34598539 -121031581 - L1MD2 LINE L1 -226 6133 6057 1 848 272 259 75 54 chr4 34598614 34598761 -121031359 - L1MD2 LINE L1 -415 5944 5795 1 848 821 192 67 67 chr4 34599064 34599243 -121030877 - B3A SINE B2 -16 182 4 1 848 1610 281 158 35 chr4 34599960 34601038 -121029082 - Lx8 LINE L1 -204 7269 6060 1 848 710 281 75 53 chr4 34601234 34601653 -121028467 + L1M2 LINE L1 4893 5322 -558 1 848 577 174 0 10 chr4 34601669 34601768 -121028352 + B1_Mur2 SINE Alu 32 129 -20 1 848 33 25 0 0 chr4 34601768 34601808 -121028312 + AT_rich Low_complexity Low_complexity 1 40 0 1 848 304 257 81 0 chr4 34601822 34601896 -121028224 - PB1D10 SINE Alu -5 112 33 1 848 390 222 43 22 chr4 34602480 34602572 -121027548 - B4 SINE B4 -161 131 38 1 848 1490 171 127 6 chr4 34602581 34602904 -121027216 - ORR1D1 LTR MaLR -12 362 1 1 849 1300 48 0 0 chr4 34603664 34603811 -121026309 + B1_Mus1 SINE Alu 2 148 0 1 849 21 36 0 0 chr4 34604519 34604547 -121025573 + AT_rich Low_complexity Low_complexity 1 28 0 1 849 638 58 11 0 chr4 34604548 34604635 -121025485 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 849 2476 225 67 45 chr4 34604677 34605454 -121024666 - RLTR40 LTR ERVK -23 794 1 1 849 498 169 0 0 chr4 34605469 34605552 -121024568 - B3A SINE B2 -66 132 50 1 849 265 255 27 0 chr4 34606132 34606217 -121023903 - B1F SINE Alu -1 146 31 1 849 820 72 45 0 chr4 34607456 34607567 -121022553 - B1_Mur4 SINE Alu -7 143 28 1 849 1257 141 39 16 chr4 34607585 34607826 -121022294 - RMER1A Other Other -42 1024 693 1 849 2788 221 110 88 chr4 34607838 34608665 -121021455 + RMER13A LTR ERVK 16 860 0 1 849 1891 219 96 143 chr4 34608665 34609342 -121020778 - RMER1A Other Other -330 700 56 1 849 440 221 129 8 chr4 34609345 34609477 -121020643 - RMER1A Other Other -810 220 73 1 849 376 151 135 38 chr4 34609478 34609607 -121020513 + ORR1A4 LTR MaLR 1 181 -213 1 849 1068 23 0 0 chr4 34609836 34609965 -121020155 - B1_Mus2 SINE Alu -1 146 18 1 849 25 0 0 0 chr4 34610328 34610353 -121019767 + AT_rich Low_complexity Low_complexity 1 25 0 2 849 270 0 0 0 chr4 34611031 34611061 -121019059 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 849 357 24 0 0 chr4 34611097 34611139 -121018981 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 849 279 0 0 0 chr4 34611541 34611572 -121018548 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 849 884 288 40 16 chr4 34611572 34611819 -121018301 - B4 SINE B4 -38 254 2 2 849 316 280 145 48 chr4 34612493 34612514 -121017606 + ID_B1 SINE B4 67 99 -125 2 849 210 321 16 89 chr4 34612514 34612637 -121017483 + PB1D7 SINE Alu 1 114 -6 2 849 2359 143 92 7 chr4 34613373 34613796 -121016324 + RMER6A LTR ERVK 1 459 -2 2 849 2689 143 162 4 chr4 34613798 34614310 -121015810 + RMER6-int LTR ERVK 5 597 -2580 2 849 254 273 0 0 chr4 34614319 34614374 -121015746 + LSU-rRNA_Hsa rRNA rRNA 1783 1837 -3198 2 849 1096 114 30 0 chr4 34614374 34614540 -121015580 + RMER6-int LTR ERVK 2579 2749 -428 2 849 1302 151 70 12 chr4 34614552 34614794 -121015326 + RMER6-int LTR ERVK 2880 3135 -42 2 849 311 127 111 14 chr4 34614772 34614844 -121015276 + MYSERV6-int LTR ERVK 7690 7768 -1191 2 849 3111 138 178 29 chr4 34614846 34615503 -121014617 + RMER6A LTR ERVK 2 756 0 2 849 367 320 158 20 chr4 34615593 34615896 -121014224 - MER2 DNA MER2_type 0 345 1 2 849 23 0 0 0 chr4 34616671 34616694 -121013426 + AT_rich Low_complexity Low_complexity 1 23 0 2 849 457 175 92 55 chr4 34617666 34617775 -121012345 - B1_Mur1 SINE Alu -5 144 32 2 849 990 125 7 0 chr4 34618808 34618944 -121011176 + B1_Mur4 SINE Alu 1 137 -13 2 849 353 216 126 10 chr4 34619508 34619611 -121010509 - MT2A LTR ERVL -329 204 90 2 849 277 287 244 0 chr4 34619678 34619793 -121010327 + MLT1F LTR MaLR 320 462 -86 2 849 184 316 112 12 chr4 34621265 34621345 -121008775 + MIR SINE MIR 41 128 -80 2 849 649 248 287 0 chr4 34621345 34621631 -121008489 + ORR1D2 LTR MaLR 1 368 -2 2 849 1002 198 186 46 chr4 34621741 34622064 -121008056 - ORR1D2 LTR MaLR -2 368 1 2 849 189 121 0 0 chr4 34622175 34622208 -121007912 + (G)n Simple_repeat Simple_repeat 1 33 0 2 849 352 152 0 0 chr4 34622598 34622657 -121007463 - PB1D9 SINE Alu -2 118 60 2 849 306 194 75 0 chr4 34622945 34623012 -121007108 - ID4_ SINE ID -9 74 3 2 849 318 187 39 39 chr4 34623022 34623100 -121007020 - ID_B1 SINE B4 -62 162 85 2 849 29 0 0 0 chr4 34623818 34623847 -121006273 + AT_rich Low_complexity Low_complexity 1 29 0 2 849 784 279 38 111 chr4 34624201 34624516 -121005604 + MTE2a LTR MaLR 3 294 -85 2 849 1430 38 0 139 chr4 34625128 34625343 -121004777 + B2_Mm1a SINE B2 2 186 -7 2 849 349 314 105 0 chr4 34625566 34625690 -121004430 - RSINE1 SINE B4 -4 161 25 2 849 2411 187 26 4 chr4 34625748 34626216 -121003904 - Lx5 LINE L1 -17 7033 6556 2 849 1239 118 93 0 chr4 34626452 34626656 -121003464 - URR1A DNA MER1_type -3 223 1 2 849 611 314 45 18 chr4 34626852 34627076 -121003044 - MER82 DNA MER2_type -233 420 191 2 849 390 257 150 29 chr4 34627699 34627839 -121002281 - B3 SINE B2 -32 184 28 2 849 483 275 40 23 chr4 34627869 34628044 -121002076 - B3A SINE B2 -16 182 5 2 849 189 0 0 0 chr4 34628084 34628105 -121002015 + (T)n Simple_repeat Simple_repeat 1 21 0 2 849 180 0 0 0 chr4 34628154 34628174 -121001946 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 849 423 188 0 12 chr4 34628174 34628255 -121001865 - B1_Mur1 SINE Alu -3 146 67 2 849 502 180 0 0 chr4 34628287 34628376 -121001744 - B1_Mur1 SINE Alu -28 121 33 2 849 389 20 20 0 chr4 34628405 34628455 -121001665 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 849 398 270 20 20 chr4 34628467 34628569 -121001551 - RSINE1 SINE B4 -60 105 4 2 849 253 269 11 124 chr4 34628851 34628940 -121001180 + PB1D10 SINE Alu 6 84 -33 2 849 466 269 96 7 chr4 34630250 34630396 -120999724 - MER20 DNA MER1_type -1 218 60 2 849 209 108 0 26 chr4 34630750 34630788 -120999332 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 849 423 294 114 57 chr4 34631127 34631354 -120998766 + 7SK RNA RNA 1 240 -91 2 849 201 121 0 0 chr4 34631538 34631571 -120998549 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 849 319 282 144 8 chr4 34632554 34632686 -120997434 + Cheshire DNA MER1_type 125 274 -2146 2 849 695 167 38 8 chr4 34632877 34633010 -120997110 - B1_Mur1 SINE Alu 0 149 13 2 849 180 0 0 0 chr4 34633018 34633038 -120997082 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2 849 189 139 0 0 chr4 34633963 34634006 -120996114 + (A)n Simple_repeat Simple_repeat 1 43 0 2 849 439 269 0 0 chr4 34634017 34634121 -120995999 + PB1D7 SINE Alu 2 105 -15 2 849 2228 45 0 0 chr4 34635078 34635343 -120994777 + L1Md_T LINE L1 6318 6582 0 2 849 201 121 0 0 chr4 34636421 34636454 -120993666 + (GGA)n Simple_repeat Simple_repeat 1 33 0 2 849 249 217 48 32 chr4 34637138 34637200 -120992920 - ID4 SINE ID -2 81 19 2 849 253 311 33 16 chr4 34637399 34637520 -120992600 + MER110A LTR ERV1 307 429 -39 2 849 227 238 95 0 chr4 34637862 34637925 -120992195 + MTEa LTR MaLR 308 376 -3 2 849 374 270 30 0 chr4 34638145 34638245 -120991875 + PB1D10 SINE Alu 6 108 -9 2 849 604 137 41 23 chr4 34638421 34638776 -120991344 + (CA)n Simple_repeat Simple_repeat 1 361 0 2 849 601 157 47 0 chr4 34638828 34639000 -120991120 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 849 521 253 129 0 chr4 34639152 34639322 -120990798 - B3A SINE B2 -4 194 3 2 849 1003 119 0 0 chr4 34640601 34640735 -120989385 + B1_Mus1 SINE Alu 3 136 -12 2 849 375 291 126 57 chr4 34640802 34641064 -120989056 + LTR37A LTR ERV1 4 283 -143 2 849 291 237 157 25 chr4 34641094 34641215 -120988905 - ID_B1 SINE B4 -9 215 79 2 849 279 248 97 8 chr4 34641205 34641339 -120988781 + LTR37A LTR ERV1 278 423 -3 2 849 1208 48 7 0 chr4 34641341 34641487 -120988633 + B1_Mus1 SINE Alu 2 148 0 2 849 203 139 0 44 chr4 34641491 34641536 -120988584 + A-rich Low_complexity Low_complexity 2 44 0 2 849 24 32 0 0 chr4 34641761 34641792 -120988328 + AT_rich Low_complexity Low_complexity 1 31 0 2 849 25 51 0 0 chr4 34641883 34641922 -120988198 + AT_rich Low_complexity Low_complexity 1 39 0 2 849 515 61 16 14 chr4 34642230 34642335 -120987785 + B1_Mm SINE Alu 47 149 0 2 849 400 44 43 29 chr4 34642335 34642405 -120987715 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 2 849 1035 93 43 0 chr4 34642427 34642589 -120987531 + B2_Mm2 SINE B2 27 195 0 2 849 7238 25 0 5 chr4 34642591 34643423 -120986697 + L1Md_T LINE L1 5754 6581 -1 2 849 21 0 0 0 chr4 34643712 34643733 -120986387 + GC_rich Low_complexity Low_complexity 1 21 0 2 849 342 0 0 0 chr4 34644047 34644085 -120986035 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 849 728 159 14 42 chr4 34644105 34644249 -120985871 + B1_Mur1 SINE Alu 10 149 0 2 849 646 231 4 160 chr4 34645368 34645605 -120984515 + MTE2a LTR MaLR 1 200 -179 2 849 1053 237 106 65 chr4 34645616 34646080 -120984040 + RMER5 LTR ERV1 15 497 -37 2 849 21 0 0 0 chr4 34646737 34646758 -120983362 + AT_rich Low_complexity Low_complexity 1 21 0 2 849 1012 179 279 3 chr4 34647150 34647480 -120982640 + MTC LTR MaLR 1 421 0 2 849 900 126 23 11 chr4 34648094 34648271 -120981849 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 849 534 178 59 0 chr4 34648307 34648408 -120981712 - PB1D9 SINE Alu -4 116 10 2 849 718 300 58 10 chr4 34648827 34649137 -120980983 + ORR1E LTR MaLR 13 337 -22 2 849 25 0 0 0 chr4 34649333 34649358 -120980762 + AT_rich Low_complexity Low_complexity 1 25 0 2 849 225 65 0 0 chr4 34649358 34649389 -120980731 + (T)n Simple_repeat Simple_repeat 1 31 0 2 849 1263 27 0 0 chr4 34649389 34649536 -120980584 - B1_Mm SINE Alu 0 147 1 2 849 537 235 200 0 chr4 34649593 34649763 -120980357 - B3 SINE B2 -10 206 3 2 849 469 213 160 34 chr4 34650411 34650586 -120979534 - B3A SINE B2 0 198 2 2 849 327 130 0 0 chr4 34651286 34651340 -120978780 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 849 350 233 110 58 chr4 34651479 34651670 -120978450 - RMER5 LTR ERV1 -243 291 91 2 849 315 219 27 0 chr4 34651668 34651741 -120978379 + RMER5 LTR ERV1 361 435 -99 2 849 227 252 87 48 chr4 34651855 34651959 -120978161 + MTE2a LTR MaLR 270 377 -2 2 849 229 295 104 5 chr4 34652611 34652812 -120977308 + L1M5 LINE L1 4249 4469 -1677 2 849 593 249 20 93 chr4 34653124 34653328 -120976792 + B3A SINE B2 2 190 -8 2 849 428 294 81 0 chr4 34653356 34653492 -120976628 - ORR1E LTR MaLR -210 149 3 2 849 493 340 50 0 chr4 34653786 34653945 -120976175 + B3A SINE B2 2 168 -30 2 849 219 36 0 0 chr4 34653951 34653979 -120976141 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 849 310 194 30 0 chr4 34654304 34654371 -120975749 + B1_Mm SINE Alu 79 147 0 2 849 28 0 0 0 chr4 34654371 34654399 -120975721 + AT_rich Low_complexity Low_complexity 1 28 0 2 849 461 301 45 36 chr4 34655238 34655459 -120974661 + RMER15-int LTR ERVL 466 688 -4311 2 849 470 275 119 22 chr4 34655514 34655741 -120974379 + RMER15 LTR ERVL 279 527 -48 2 849 503 213 16 16 chr4 34655773 34655897 -120974223 + MER2 DNA MER2_type 86 209 -136 2 849 231 36 0 0 chr4 34655900 34655928 -120974192 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 849 489 121 0 0 chr4 34655942 34656025 -120974095 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 849 2983 219 13 44 chr4 34656041 34656395 -120973725 + Lx7 LINE L1 6401 6749 -947 2 849 1008 184 113 10 chr4 34656395 34656598 -120973522 - URR1A DNA MER1_type 0 226 3 2 849 2983 219 13 44 chr4 34656598 34656834 -120973286 + Lx7 LINE L1 6750 6974 -722 2 849 1413 74 26 0 chr4 34656834 34657023 -120973097 + B2_Mm2 SINE B2 1 194 -1 2 849 2983 219 13 44 chr4 34657023 34657106 -120973014 + Lx7 LINE L1 6975 7054 -642 2 849 411 21 0 0 chr4 34657228 34657276 -120972844 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 3 849 531 199 182 44 chr4 34657594 34657731 -120972389 - RSINE1 SINE B4 -6 159 4 3 849 1006 194 27 0 chr4 34657744 34657930 -120972190 - B3 SINE B2 -25 191 1 3 849 207 100 0 0 chr4 34657967 34657997 -120972123 + (CTTG)n Simple_repeat Simple_repeat 1 30 0 3 849 529 263 0 34 chr4 34658015 34658133 -120971987 - B1_Mur2 SINE Alu -35 114 1 3 849 534 281 48 39 chr4 34658306 34658513 -120971607 + B4A SINE B4 39 247 -45 3 849 195 129 0 0 chr4 34658933 34658964 -120971156 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 849 325 322 0 0 chr4 34659072 34659162 -120970958 + B3A SINE B2 3 92 -106 3 849 329 236 141 51 chr4 34659177 34659333 -120970787 - B4A SINE B4 -122 170 1 3 849 1279 231 52 25 chr4 34660356 34660720 -120969400 - MTD LTR MaLR 0 419 46 3 849 773 40 0 2 chr4 34662185 34662299 -120967821 + B1_Mm SINE Alu 36 147 -1 3 849 220 45 0 83 chr4 34662299 34662347 -120967773 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 849 1064 99 0 0 chr4 34662349 34662500 -120967620 - B2_Mm2 SINE B2 -43 152 2 3 849 21 36 0 0 chr4 34662579 34662607 -120967513 + AT_rich Low_complexity Low_complexity 1 28 0 3 849 803 126 73 15 chr4 34662848 34662985 -120967135 + B1_Mur4 SINE Alu 1 145 -5 3 849 351 248 128 10 chr4 34663294 34663396 -120966724 - PB1D10 SINE Alu -1 116 3 3 849 974 238 120 8 chr4 34664580 34664838 -120965282 - B4A SINE B4 -4 288 2 3 849 438 133 0 50 chr4 34665225 34665407 -120964713 + GA-rich Low_complexity Low_complexity 2 174 0 3 849 441 156 0 0 chr4 34665447 34665524 -120964596 + A-rich Low_complexity Low_complexity 3 79 0 3 849 362 368 44 0 chr4 34665622 34665758 -120964362 + RSINE1 SINE B4 22 163 -2 3 849 1276 89 158 127 chr4 34665758 34666042 -120964078 + Lx LINE L1 6362 6654 0 3 849 499 231 82 8 chr4 34666054 34666076 -120964044 + B1_Mur1 SINE Alu 3 24 -125 3 849 549 64 0 0 chr4 34666076 34666154 -120963966 + (TCCC)n Simple_repeat Simple_repeat 1 78 0 3 849 499 231 82 8 chr4 34666154 34666253 -120963867 + B1_Mur1 SINE Alu 25 132 -17 3 849 633 217 106 28 chr4 34667472 34667652 -120962468 - B3A SINE B2 -3 195 2 3 849 733 210 14 34 chr4 34667945 34668093 -120962027 + B1_Mur1 SINE Alu 5 149 0 3 849 1236 55 0 0 chr4 34668196 34668342 -120961778 - B1_Mus2 SINE Alu 0 147 2 3 849 263 301 0 46 chr4 34669202 34669310 -120960810 - ID_B1 SINE B4 -1 223 121 3 849 641 261 38 85 chr4 34669418 34669694 -120960426 + B4A SINE B4 2 266 -26 3 849 429 54 0 0 chr4 34669694 34669750 -120960370 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 849 641 261 38 85 chr4 34669750 34669766 -120960354 + B4A SINE B4 267 280 -12 3 849 1326 176 164 19 chr4 34670438 34670804 -120959316 - MTD LTR MaLR 0 419 1 3 849 181 163 41 0 chr4 34671229 34671278 -120958842 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 3 849 503 220 58 204 chr4 34672236 34672476 -120957644 - ID_B1 SINE B4 -8 216 12 3 849 262 311 0 82 chr4 34672506 34672604 -120957516 + B1F2 SINE Alu 2 91 -58 3 849 7858 68 9 3 chr4 34672725 34673722 -120956398 - Lx3_Mus LINE L1 0 5886 4884 3 849 7827 63 43 32 chr4 34673722 34674827 -120955293 + Lx3_Mus LINE L1 5892 7009 0 3 849 1502 59 16 0 chr4 34675725 34675911 -120954209 - B2_Mm2 SINE B2 -6 189 1 3 849 401 0 0 20 chr4 34675931 34675981 -120954139 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 849 606 237 67 0 chr4 34676407 34676542 -120953578 + B1_Mur1 SINE Alu 1 144 -5 3 849 288 111 0 0 chr4 34676546 34676591 -120953529 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 3 849 255 140 0 0 chr4 34676615 34676665 -120953455 + (A)n Simple_repeat Simple_repeat 1 50 0 3 849 186 239 22 0 chr4 34677064 34677110 -120953010 + MIR SINE MIR 95 141 -67 3 849 243 372 0 0 chr4 34677921 34678023 -120952097 + PB1D10 SINE Alu 3 104 -13 3 849 612 246 58 0 chr4 34678090 34678228 -120951892 - B1_Mur1 SINE Alu -1 148 3 3 849 3520 25 2 0 chr4 34678251 34678646 -120951474 - MTA_Mm LTR MaLR 0 396 1 3 849 1047 205 24 0 chr4 34678668 34678873 -120951247 + B3 SINE B2 2 211 -5 3 849 1857 102 0 28 chr4 34678920 34679203 -120950917 - L1_Mus3 LINE L1 -6 6632 6358 3 849 21 57 0 0 chr4 34679207 34679242 -120950878 + AT_rich Low_complexity Low_complexity 1 35 0 3 849 483 259 36 30 chr4 34679367 34679553 -120950567 - MTD LTR MaLR -14 405 237 3 849 357 263 6 122 chr4 34679629 34679785 -120950335 - B3A SINE B2 -1 197 60 3 849 299 45 0 43 chr4 34680281 34680298 -120949822 + (TTTC)n Simple_repeat Simple_repeat 2 17 0 3 849 3434 35 0 0 chr4 34680298 34680694 -120949426 - MTA_Mm LTR MaLR 0 396 1 3 849 299 45 0 43 chr4 34680694 34680722 -120949398 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 3 849 1084 76 14 20 chr4 34680723 34680871 -120949249 - B1_Mus1 SINE Alu 0 148 2 3 849 2221 155 27 12 chr4 34681103 34681509 -120948611 + MTC LTR MaLR 2 413 -8 3 849 3538 174 56 23 chr4 34681779 34682510 -120947610 - RLTR25B LTR ERVK -230 798 44 3 849 1546 202 42 22 chr4 34682636 34682991 -120947129 + ORR1D1 LTR MaLR 6 367 -7 3 849 273 250 0 53 chr4 34683237 34683313 -120946807 - RMER15 LTR ERVL 0 575 504 3 849 785 207 71 16 chr4 34683607 34683789 -120946331 - B4 SINE B4 -100 192 1 3 849 1188 55 0 0 chr4 34684258 34684404 -120945716 - B1_Mm SINE Alu 0 147 2 3 849 244 250 19 0 chr4 34684404 34684456 -120945664 - L1MC LINE L1 -2412 5583 5531 3 849 4451 8 0 0 chr4 34684494 34684976 -120945144 + LTRIS_Mm LTR ERV1 1 482 0 3 849 323 271 98 66 chr4 34685012 34685311 -120944809 - L1MC LINE L1 -758 5388 5090 3 849 292 288 38 0 chr4 34685329 34685409 -120944711 + ID_B1 SINE B4 90 172 -52 3 849 406 282 64 1 chr4 34685582 34685770 -120944350 - L1MC LINE L1 -1276 4870 4669 3 849 186 43 0 0 chr4 34685874 34685897 -120944223 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 849 667 328 36 31 chr4 34685903 34686290 -120943830 - Lx9 LINE L1 -184 7460 7072 3 849 2036 108 3 9 chr4 34686652 34686971 -120943149 + ORR1A2 LTR MaLR 3 319 -8 3 849 208 289 99 11 chr4 34687048 34687139 -120942981 - MIRb SINE MIR -90 178 80 3 849 221 233 78 52 chr4 34687448 34687525 -120942595 - MIRc SINE MIR -106 162 84 3 849 347 250 10 20 chr4 34687712 34687814 -120942306 - MTC LTR MaLR -320 101 1 3 849 489 274 286 17 chr4 34687889 34688166 -120941954 + MLT1A0 LTR MaLR 14 365 0 3 849 1087 96 0 0 chr4 34688525 34688662 -120941458 + B1_Mus1 SINE Alu 2 138 -10 3 849 647 25 12 0 chr4 34688662 34688743 -120941377 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 3 849 1279 109 38 0 chr4 34688755 34688939 -120941181 - B2_Mm2 SINE B2 -4 191 1 3 849 287 276 18 37 chr4 34689331 34689440 -120940680 - MTEb LTR MaLR -1 378 272 3 849 593 291 108 21 chr4 34689464 34689817 -120940303 + Lx9 LINE L1 7151 7618 -26 3 849 718 19 18 27 chr4 34690408 34690519 -120939601 + (GAGAA)n Simple_repeat Simple_repeat 5 114 0 3 849 606 63 0 0 chr4 34690598 34690677 -120939443 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 3 849 472 181 29 14 chr4 34690679 34690692 -120939428 + polypurine Low_complexity Low_complexity 4 17 0 3 849 842 116 147 0 chr4 34690692 34690821 -120939299 + B1_Mus1 SINE Alu 1 148 0 3 849 472 181 29 14 chr4 34690821 34690947 -120939173 + GA-rich Low_complexity Low_complexity 18 144 0 3 849 1812 203 110 5 chr4 34691932 34692378 -120937742 - Lx9 LINE L1 0 7644 7152 3 849 534 250 95 48 chr4 34692544 34692880 -120937240 - Charlie1b DNA MER1_type -7 516 165 3 849 273 119 0 0 chr4 34692971 34693013 -120937107 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 849 810 0 0 0 chr4 34693558 34693648 -120936472 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 3 849 288 0 0 0 chr4 34694114 34694146 -120935974 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 849 246 271 0 54 chr4 34695329 34695403 -120934717 + ID4 SINE ID 11 80 -3 3 849 840 204 154 11 chr4 34695454 34695642 -120934478 - B3 SINE B2 0 216 2 3 849 269 250 188 0 chr4 34695697 34695793 -120934327 + PB1D10 SINE Alu 4 117 0 3 849 755 272 32 36 chr4 34695796 34696048 -120934072 + B4A SINE B4 1 251 -41 3 849 477 309 12 69 chr4 34696063 34696223 -120933897 + RSINE1 SINE B4 13 163 -2 3 849 249 246 16 0 chr4 34697074 34697135 -120932985 + L1M2 LINE L1 5737 5798 -499 3 849 216 0 0 0 chr4 34697734 34697758 -120932362 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 849 248 267 136 65 chr4 34697813 34697993 -120932127 - L2b LINE L2 -24 3402 3214 3 849 352 267 31 70 chr4 34698625 34698673 -120931447 + B4 SINE B4 44 86 -206 3 849 552 122 0 0 chr4 34698673 34698755 -120931365 + B1_Mus1 SINE Alu 1 82 -66 3 849 227 258 16 16 chr4 34698713 34698764 -120931356 + RLTR25B LTR ERVK 441 492 -536 3 849 786 50 0 0 chr4 34698764 34698863 -120931257 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 849 227 258 16 16 chr4 34698863 34698874 -120931246 + RLTR25B LTR ERVK 493 503 -525 3 849 225 319 80 0 chr4 34699305 34699418 -120930702 - MIR SINE MIR -53 215 90 3 849 831 115 0 0 chr4 34700504 34700634 -120929486 + (TCCC)n Simple_repeat Simple_repeat 4 133 0 3 849 21 36 0 0 chr4 34701009 34701037 -120929083 + AT_rich Low_complexity Low_complexity 1 28 0 3 849 592 206 158 40 chr4 34701046 34701223 -120928897 - B3A SINE B2 0 198 1 3 849 233 237 105 0 chr4 34701821 34701897 -120928223 + L1MC3 LINE L1 7699 7782 -3 3 849 777 204 0 7 chr4 34702924 34703067 -120927053 + B1_Mur3 SINE Alu 2 143 -6 4 849 318 269 63 14 chr4 34703645 34703788 -120926332 - MLT1D LTR MaLR -6 499 350 4 849 6149 109 23 21 chr4 34703817 34704571 -120925549 - RMER17B LTR ERVK 0 958 210 4 849 216 0 0 0 chr4 34704571 34704595 -120925525 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 849 6149 109 23 21 chr4 34704595 34704796 -120925324 - RMER17B LTR ERVK -749 209 2 4 849 820 131 0 0 chr4 34704827 34704964 -120925156 + URR1B DNA MER1_type 89 225 0 4 849 227 262 45 15 chr4 34704964 34705030 -120925090 - MLT1D LTR MaLR -149 356 289 4 849 3600 18 0 0 chr4 34705255 34705651 -120924469 + MTA_Mm LTR MaLR 1 396 0 4 849 297 0 0 0 chr4 34705651 34705687 -120924433 + MTB LTR MaLR 365 400 0 4 849 481 198 202 6 chr4 34705864 34706027 -120924093 - ORR1D2 LTR MaLR -4 366 172 4 849 1635 151 7 3 chr4 34706179 34706465 -120923655 + ORR1A2 LTR MaLR 1 287 -40 4 849 418 36 0 0 chr4 34706530 34706585 -120923535 + ORR1A2 LTR MaLR 272 326 0 4 849 1191 56 0 0 chr4 34706705 34706847 -120923273 + B1_Mus2 SINE Alu 1 142 -5 4 849 331 83 45 91 chr4 34707293 34707359 -120922761 + B2_Mm2 SINE B2 119 181 -14 4 849 1897 229 22 63 chr4 34707519 34708012 -120922108 + Lx9 LINE L1 6853 7325 -319 4 849 308 248 9 129 chr4 34708077 34708193 -120921927 + PB1D9 SINE Alu 12 113 -7 4 849 580 297 20 7 chr4 34708236 34708385 -120921735 - RSINE1 SINE B4 -11 154 4 4 849 11394 127 20 3 chr4 34708385 34710363 -120919757 + Lx2B LINE L1 4013 6032 -968 4 849 1231 108 70 5 chr4 34710363 34710578 -120919542 + Lx2B LINE L1 6768 6996 -4 4 849 229 333 104 16 chr4 34711099 34711282 -120918838 + LTR41 LTR ERVL 557 755 -13 4 849 397 253 52 12 chr4 34711659 34711831 -120918289 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 849 399 276 19 82 chr4 34711966 34712124 -120917996 - B4A SINE B4 -144 148 1 4 849 3247 184 78 140 chr4 34712142 34712281 -120917839 - Lx6 LINE L1 -15 7445 7325 4 849 1167 44 0 0 chr4 34712281 34712418 -120917702 + B1_Mus2 SINE Alu 1 137 -10 4 849 243 0 0 0 chr4 34712418 34712445 -120917675 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 849 3247 184 78 140 chr4 34712445 34712512 -120917608 - Lx6 LINE L1 -136 7324 7318 4 849 929 99 14 0 chr4 34712512 34712654 -120917466 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 4 849 3247 184 78 140 chr4 34712654 34713337 -120916783 - Lx6 LINE L1 -143 7317 6610 4 849 2257 108 39 49 chr4 34713348 34713738 -120916382 - ORR1B1 LTR MaLR -7 387 2 4 849 3646 182 65 33 chr4 34713738 34714492 -120915628 - Lx6 LINE L1 -848 6612 5835 4 849 4284 161 59 11 chr4 34715110 34715893 -120914227 - Lx6 LINE L1 -80 5800 4981 4 849 415 144 10 91 chr4 34716993 34717092 -120913028 + RMER16 LTR ERVK 1 91 -442 4 849 431 194 19 37 chr4 34717089 34717196 -120912924 + RMER16 LTR ERVK 424 528 -5 4 849 634 240 49 32 chr4 34717406 34717591 -120912529 - Tigger7 DNA MER2_type -8 2483 2296 4 849 291 28 0 0 chr4 34717846 34717882 -120912238 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 849 1063 87 0 0 chr4 34717882 34718020 -120912100 - B1_Mus2 SINE Alu -9 138 1 4 849 39 74 0 0 chr4 34718118 34718199 -120911921 + AT_rich Low_complexity Low_complexity 1 81 0 4 849 332 251 43 11 chr4 34718317 34718419 -120911701 - B1F1 SINE Alu -8 112 1 4 849 204 163 0 0 chr4 34718683 34718726 -120911394 + T-rich Low_complexity Low_complexity 4 46 0 4 849 1240 41 0 0 chr4 34718726 34718873 -120911247 - B1_Mus2 SINE Alu 0 147 1 4 849 442 174 35 0 chr4 34718901 34718987 -120911133 - B1_Mur1 SINE Alu 0 149 61 4 849 1123 229 142 77 chr4 34719003 34719638 -120910482 - RMER12 LTR ERVK -6 1842 670 4 849 1061 111 47 0 chr4 34719640 34719811 -120910309 + B2_Mm2 SINE B2 16 194 -1 4 849 2556 202 47 45 chr4 34719823 34720506 -120909614 - RMER12 LTR ERVK -638 684 1 4 849 287 217 0 0 chr4 34720506 34720560 -120909560 - B1_Mur4 SINE Alu -86 64 11 4 849 226 310 0 14 chr4 34720685 34720757 -120909363 + CT-rich Low_complexity Low_complexity 3 73 0 4 849 1027 163 102 0 chr4 34721677 34721873 -120908247 + URR1B DNA MER1_type 8 223 -2 4 849 196 53 53 0 chr4 34722175 34722213 -120907907 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 849 854 129 94 25 chr4 34722224 34722383 -120907737 + B2_Mm2 SINE B2 20 189 -6 4 849 24 32 0 0 chr4 34722383 34722414 -120907706 + AT_rich Low_complexity Low_complexity 1 31 0 4 849 426 108 173 0 chr4 34722976 34723078 -120907042 - B2_Mm2 SINE B2 -8 187 47 4 849 1177 78 42 0 chr4 34723107 34723274 -120906846 - B2_Mm2 SINE B2 -15 180 7 4 849 900 246 19 10 chr4 34723674 34723879 -120906241 + B3 SINE B2 3 209 -7 4 849 246 349 75 0 chr4 34723884 34723990 -120906130 + Lx8 LINE L1 7169 7282 -191 4 849 887 246 55 55 chr4 34724113 34724388 -120905732 + B4 SINE B4 12 286 -6 4 849 584 131 0 14 chr4 34725063 34725168 -120904952 + B1_Mur3 SINE Alu 14 113 -36 4 849 182 91 30 0 chr4 34727015 34727048 -120903072 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 849 343 276 31 31 chr4 34727048 34727135 -120902985 - B3 SINE B2 -43 173 85 4 849 974 194 139 13 chr4 34727135 34727365 -120902755 - RLTR22_Mur LTR ERVK 0 1848 1590 4 849 2165 115 15 9 chr4 34727636 34727978 -120902142 - RLTR22_Mur LTR ERVK -1043 805 462 4 849 1718 16 0 0 chr4 34728008 34728200 -120901920 - B2_Mm1t SINE B2 0 193 2 4 849 411 21 0 0 chr4 34729738 34729786 -120900334 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 4 849 938 166 82 39 chr4 34729786 34730018 -120900102 - Lx4B LINE L1 -15 7043 6802 4 849 1220 247 122 32 chr4 34730047 34730588 -120899532 - Lx5 LINE L1 -446 6604 5978 4 849 414 0 0 0 chr4 34730588 34730634 -120899486 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 849 969 275 71 16 chr4 34730634 34730659 -120899461 - Lx5 LINE L1 -1483 5977 5953 4 849 1171 188 39 192 chr4 34730666 34730863 -120899257 - ORR1D1 LTR MaLR 0 374 182 4 849 473 0 18 0 chr4 34730863 34730920 -120899200 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 849 1171 188 39 192 chr4 34730920 34731164 -120898956 - ORR1D1 LTR MaLR -193 181 1 4 849 426 39 0 0 chr4 34731173 34731225 -120898895 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 849 2301 242 61 15 chr4 34731237 34731967 -120898153 - Lx5 LINE L1 -651 5229 4431 4 849 261 0 0 0 chr4 34731967 34731996 -120898124 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 4 849 1930 259 120 16 chr4 34731996 34732088 -120898032 - Lx5 LINE L1 -1447 4430 4321 4 849 315 194 30 0 chr4 34732093 34732160 -120897960 + RMER15 LTR ERVL 1 69 -506 4 849 764 157 143 30 chr4 34732729 34732932 -120897188 + RMER1B Other Other 190 415 -651 4 849 1079 249 78 19 chr4 34732916 34733386 -120896734 + RMER1A Other Other 1 469 -561 4 849 349 274 86 36 chr4 34733388 34733528 -120896592 + RLTR12B LTR ERVK 1 147 -381 4 849 250 301 42 53 chr4 34733558 34733821 -120896299 + RLTR15 LTR ERVK 73 332 -27 4 106 2462 200 70 5 chr4 34733860 34734434 -120895686 + RMER1B Other Other 455 1065 -1 4 850 24 0 0 0 chr4 34734564 34734588 -120895532 + AT_rich Low_complexity Low_complexity 1 24 0 4 850 307 263 190 50 chr4 34735812 34735912 -120894208 + B1F SINE Alu 13 126 -23 4 850 1046 106 119 0 chr4 34735946 34736106 -120894014 + B2_Mm1t SINE B2 1 179 -14 4 850 318 134 271 17 chr4 34736167 34736285 -120893835 + B2_Mm2 SINE B2 47 194 -1 4 850 415 297 0 0 chr4 34736309 34736420 -120893700 + PB1D10 SINE Alu 1 111 -6 4 850 217 155 17 33 chr4 34736652 34736712 -120893408 + T-rich Low_complexity Low_complexity 2 60 0 4 850 216 0 0 0 chr4 34737329 34737353 -120892767 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 850 1444 45 22 22 chr4 34737414 34737598 -120892522 + B2_Mm1t SINE B2 2 185 -8 4 850 335 247 118 13 chr4 34737633 34737736 -120892384 + PB1D9 SINE Alu 24 126 -22 4 850 267 31 0 0 chr4 34738211 34738243 -120891877 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 850 896 152 165 0 chr4 34738245 34738409 -120891711 - B3 SINE B2 -25 191 1 4 850 205 216 78 0 chr4 34738574 34738625 -120891495 - MIR SINE MIR -70 138 84 4 850 877 93 161 0 chr4 34738877 34739039 -120891081 - B2_Mm2 SINE B2 -7 188 1 4 850 306 0 0 0 chr4 34739280 34739314 -120890806 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 850 329 224 245 0 chr4 34739399 34739497 -120890623 - RSINE1 SINE B4 -33 132 11 4 850 297 307 79 0 chr4 34739598 34739699 -120890421 + ID_B1 SINE B4 68 176 -48 4 850 450 228 39 10 chr4 34739617 34739719 -120890401 + PB1D10 SINE Alu 10 114 -3 4 850 292 235 140 20 chr4 34739812 34739912 -120890208 + PB1D10 SINE Alu 5 116 -1 4 850 1180 43 0 0 chr4 34740382 34740522 -120889598 - B1_Mus2 SINE Alu -5 142 3 4 850 725 164 14 50 chr4 34741348 34741489 -120888631 - B1_Mur3 SINE Alu -2 147 12 4 850 482 276 146 90 chr4 34743060 34743327 -120886793 + B4 SINE B4 9 290 -2 4 850 1931 241 139 20 chr4 34743393 34744099 -120886021 + Lx9 LINE L1 6681 7470 -174 4 850 449 191 5 63 chr4 34744646 34744772 -120885348 + PB1D9 SINE Alu 34 149 0 4 850 290 175 0 0 chr4 34745688 34745745 -120884375 - B1_Mus1 SINE Alu -91 57 1 4 850 5827 44 0 0 chr4 34747314 34748013 -120882107 + L1Md_T LINE L1 5884 6582 0 4 850 270 250 172 30 chr4 34750099 34750198 -120879922 - PB1D7 SINE Alu -7 113 1 4 850 201 154 0 0 chr4 34750730 34750769 -120879351 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 850 21 0 0 0 chr4 34751175 34751196 -120878924 + AT_rich Low_complexity Low_complexity 1 21 0 4 850 453 204 69 1 chr4 34759724 34759825 -120870295 + B3 SINE B2 1 108 -90 4 850 381 43 0 0 chr4 34759854 34759901 -120870219 + (CATA)n Simple_repeat Simple_repeat 1 47 0 4 850 1098 91 0 19 chr4 34760217 34760374 -120869746 - B2_Mm2 SINE B2 -19 176 23 4 850 259 258 233 8 chr4 34761758 34761887 -120868233 - B3 SINE B2 -55 161 4 4 850 461 305 53 5 chr4 34761893 34762081 -120868039 - B3A SINE B2 -1 197 1 4 850 914 18 0 0 chr4 34762242 34762352 -120867768 + B1_Mus2 SINE Alu 29 138 -9 4 850 183 42 0 0 chr4 34762352 34762376 -120867744 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 850 355 68 34 0 chr4 34762453 34762512 -120867608 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 4 850 380 279 265 6 chr4 34762775 34762941 -120867179 - ID_B1 SINE B4 -15 209 1 5 850 186 71 0 0 chr4 34763322 34763350 -120866770 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 850 297 0 0 0 chr4 34763350 34763383 -120866737 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 850 1338 90 32 0 chr4 34765668 34765856 -120864264 + B2_Mm2 SINE B2 2 195 0 5 850 288 0 0 0 chr4 34766154 34766186 -120863934 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 850 286 289 26 18 chr4 34766362 34766494 -120863626 + RMER1C Other Other 384 525 -817 5 850 549 272 7 13 chr4 34766515 34766664 -120863456 - B1_Mur1 SINE Alu 0 149 2 5 850 844 64 172 23 chr4 34767035 34767163 -120862957 - B1_Mm SINE Alu 0 147 1 5 850 262 292 22 33 chr4 34767904 34767996 -120862124 + PB1D10 SINE Alu 6 96 -21 5 850 430 308 65 65 chr4 34768076 34768246 -120861874 - B3 SINE B2 0 216 47 5 850 304 316 24 79 chr4 34769541 34769668 -120860452 + RMER12 LTR ERVK 732 851 -471 5 850 305 283 87 39 chr4 34770570 34770673 -120859447 - PB1D10 SINE Alu 0 117 10 5 850 21 0 0 0 chr4 34770908 34770929 -120859191 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 358 291 103 66 chr4 34771111 34771247 -120858873 - B4A SINE B4 -150 142 2 5 850 504 0 0 0 chr4 34771625 34771681 -120858439 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 850 432 0 0 0 chr4 34771738 34771786 -120858334 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5 850 249 264 142 59 chr4 34771849 34772140 -120857980 - LTR84a LTR ERVL -375 386 87 5 850 365 317 89 42 chr4 34773066 34773257 -120856863 - Lx8 LINE L1 -152 7321 7122 5 850 22 35 0 0 chr4 34773366 34773395 -120856725 + AT_rich Low_complexity Low_complexity 1 29 0 5 850 21 36 0 0 chr4 34774199 34774227 -120855893 + AT_rich Low_complexity Low_complexity 1 28 0 5 850 429 302 31 0 chr4 34774339 34774468 -120855652 - B1F1 SINE Alu -16 133 1 5 850 582 174 127 15 chr4 34774571 34774705 -120855415 - B1F2 SINE Alu 0 149 1 5 850 575 122 278 0 chr4 34774795 34774910 -120855210 - B1_Mus1 SINE Alu 0 148 2 5 850 645 278 50 10 chr4 34776208 34776408 -120853712 + B3 SINE B2 2 209 -7 5 850 232 354 48 42 chr4 34776535 34776703 -120853417 - MIR3 SINE MIR -22 186 18 5 850 3468 8 3 0 chr4 34777060 34777451 -120852669 - L1Md_A LINE L1 0 6582 6191 5 850 241 286 16 104 chr4 34777678 34777803 -120852317 + PB1D10 SINE Alu 3 116 -1 5 850 224 163 19 58 chr4 34777803 34777855 -120852265 + GA-rich Low_complexity Low_complexity 4 53 0 5 850 460 264 33 0 chr4 34778097 34778218 -120851902 + B1F SINE Alu 24 148 -1 5 850 215 93 0 23 chr4 34778328 34778372 -120851748 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 850 1257 91 17 6 chr4 34778701 34778878 -120851242 + B2_Mm2 SINE B2 2 180 -15 5 850 216 0 0 0 chr4 34778887 34778911 -120851209 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 850 958 293 105 8 chr4 34779082 34779644 -120850476 + L1MC3 LINE L1 4760 5388 -758 5 850 1055 195 100 12 chr4 34779874 34780133 -120849987 + MTD LTR MaLR 2 283 -136 5 850 1214 84 14 91 chr4 34780338 34780547 -120849573 + B2_Mm1t SINE B2 1 193 0 5 850 22 0 0 0 chr4 34780908 34780930 -120849190 + AT_rich Low_complexity Low_complexity 1 22 0 5 850 1065 298 160 26 chr4 34781138 34781989 -120848131 + L1MC3 LINE L1 5262 6226 -1559 5 850 354 98 0 0 chr4 34782114 34782165 -120847955 + (A)n Simple_repeat Simple_repeat 1 51 0 5 850 1567 245 213 31 chr4 34782283 34783101 -120847019 + L1MC3 LINE L1 6715 7681 -104 5 850 210 273 51 13 chr4 34783149 34783227 -120846893 + B1F SINE Alu 1 81 -68 5 850 295 390 20 0 chr4 34783564 34783710 -120846410 - B1F SINE Alu 0 149 1 5 850 482 225 116 30 chr4 34783827 34784010 -120846110 + B3A SINE B2 2 187 -8 5 850 616 279 41 21 chr4 34784053 34784247 -120845873 + B3A SINE B2 1 198 0 5 850 686 305 56 37 chr4 34784538 34784807 -120845313 + B4A SINE B4 1 274 -18 5 850 450 0 0 0 chr4 34785368 34785418 -120844702 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 850 204 40 0 0 chr4 34785418 34785443 -120844677 + (CAG)n Simple_repeat Simple_repeat 3 27 0 5 850 400 229 92 0 chr4 34785875 34785984 -120844136 - B1_Mur1 SINE Alu -7 142 24 5 850 32 43 0 0 chr4 34786965 34787011 -120843109 + AT_rich Low_complexity Low_complexity 1 46 0 5 850 407 264 0 0 chr4 34787351 34787438 -120842682 + MTC-int LTR MaLR 466 552 -706 5 850 3248 259 131 59 chr4 34787438 34787742 -120842378 + L1_Rod LINE L1 1884 2212 -3635 5 850 402 199 142 8 chr4 34787742 34787869 -120842251 + B1_Mur2 SINE Alu 4 147 -2 5 850 3248 259 131 59 chr4 34787869 34789040 -120841080 + L1_Rod LINE L1 2213 3461 -2386 5 850 355 286 114 28 chr4 34789040 34789216 -120840904 + B3A SINE B2 2 192 -6 5 850 3248 259 131 59 chr4 34789216 34789316 -120840804 + L1_Rod LINE L1 3462 3576 -2271 5 850 1224 116 15 45 chr4 34789316 34789515 -120840605 + B2_Mm2 SINE B2 2 194 -1 5 850 3248 259 131 59 chr4 34789515 34789651 -120840469 + L1_Rod LINE L1 3577 3719 -2128 5 850 352 36 73 0 chr4 34789657 34789712 -120840408 + PB1D9 SINE Alu 1 59 -61 5 850 209 365 0 20 chr4 34789726 34789824 -120840296 + G-rich Low_complexity Low_complexity 6 101 0 5 850 747 30 10 0 chr4 34789826 34789926 -120840194 + B1_Mm SINE Alu 40 140 -7 5 850 279 0 0 0 chr4 34789928 34789959 -120840161 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 850 22 0 0 0 chr4 34789966 34789988 -120840132 + AT_rich Low_complexity Low_complexity 1 22 0 5 850 573 246 76 5 chr4 34789988 34790172 -120839948 + L1_Mur3 LINE L1 3705 3901 -1979 5 850 1291 227 49 86 chr4 34791440 34791893 -120838227 + L1_Rod LINE L1 3921 4356 -1491 5 850 1370 127 0 9 chr4 34792425 34792648 -120837472 + ORR1A2 LTR MaLR 1 221 -106 5 850 661 118 0 0 chr4 34793834 34793936 -120836184 + B1_Mus2 SINE Alu 46 147 0 5 850 366 261 85 21 chr4 34794514 34794608 -120835512 - PB1D10 SINE Alu -13 104 5 5 850 1553 145 21 77 chr4 34795310 34795647 -120834473 + ORR1A3 LTR MaLR 1 318 -8 5 850 768 115 143 25 chr4 34795651 34795812 -120834308 + ORR1A3-int LTR MaLR 1 180 -1783 5 850 1189 229 170 25 chr4 34795985 34796263 -120833857 + Lx6 LINE L1 7033 7364 -96 5 850 195 42 0 0 chr4 34796263 34796287 -120833833 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 5 850 1189 229 170 25 chr4 34796287 34796366 -120833754 + Lx6 LINE L1 7365 7442 -18 5 850 319 183 0 0 chr4 34796930 34796990 -120833130 + Lx6 LINE L1 7377 7436 -24 5 850 297 0 0 0 chr4 34797033 34797066 -120833054 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 5 850 222 321 24 12 chr4 34797315 34797397 -120832723 + AluG_3 SINE Alu 139 221 -90 5 850 207 0 0 0 chr4 34797421 34797444 -120832676 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 5 850 405 264 11 0 chr4 34797456 34797547 -120832573 + B1F SINE Alu 7 98 -51 5 850 619 157 10 0 chr4 34797619 34797721 -120832399 + B1_Mus1 SINE Alu 24 126 -22 5 850 402 39 0 0 chr4 34797741 34797793 -120832327 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 850 338 216 34 66 chr4 34798099 34798209 -120831911 + PB1D10 SINE Alu 3 108 -9 5 850 1970 117 9 9 chr4 34798204 34798523 -120831597 - ORR1A2 LTR MaLR -8 319 1 5 850 1016 88 107 54 chr4 34798712 34798880 -120831240 + B2_Mm2 SINE B2 1 177 -18 5 850 198 0 0 0 chr4 34798913 34798935 -120831185 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 850 1467 223 173 70 chr4 34799158 34799712 -120830408 + RMER19C LTR ERVK 1 611 0 5 850 4555 54 12 9 chr4 34799742 34800322 -120829798 + L1_Mus2 LINE L1 5985 6566 0 5 850 258 200 0 130 chr4 34800476 34800568 -120829552 - MLT1L LTR MaLR -283 327 248 5 850 382 256 16 31 chr4 34801036 34801165 -120828955 + B3 SINE B2 1 127 -89 5 850 3748 179 84 84 chr4 34801238 34802140 -120827980 + RMER19B LTR ERVK 1 902 0 5 850 204 40 0 0 chr4 34802260 34802285 -120827835 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 850 544 169 119 0 chr4 34802919 34803037 -120827083 + B1_Mur2 SINE Alu 18 149 0 5 850 952 68 105 8 chr4 34803082 34803215 -120826905 + B1_Mus2 SINE Alu 2 147 0 5 850 22 35 0 0 chr4 34804440 34804469 -120825651 + AT_rich Low_complexity Low_complexity 1 29 0 5 850 376 255 141 10 chr4 34804469 34804568 -120825552 + PB1D10 SINE Alu 2 113 -4 5 850 1424 157 172 18 chr4 34804825 34805156 -120824964 + ORR1C2 LTR MaLR 3 384 0 5 850 246 309 86 0 chr4 34805229 34805310 -120824810 + RSINE1 SINE B4 64 151 -14 5 850 381 262 36 72 chr4 34805387 34805498 -120824622 + PB1D10 SINE Alu 10 116 -1 5 850 181 91 22 43 chr4 34805885 34805931 -120824189 + A-rich Low_complexity Low_complexity 2 46 0 5 850 365 305 98 66 chr4 34805947 34806221 -120823899 + HAL1 LINE L1 772 1054 -1453 5 850 2091 242 127 8 chr4 34806439 34806968 -120823152 + RMER1B Other Other 1 592 -474 5 850 650 283 26 47 chr4 34807903 34808096 -120822024 - B3A SINE B2 -5 193 5 5 850 1115 88 0 0 chr4 34808125 34808273 -120821847 + B1_Mus1 SINE Alu 1 148 0 5 850 31 0 0 0 chr4 34808296 34808327 -120821793 + AT_rich Low_complexity Low_complexity 1 31 0 5 850 1291 74 9 116 chr4 34808337 34808552 -120821568 + B2_Mm1t SINE B2 1 192 -1 5 850 292 262 134 0 chr4 34808898 34809004 -120821116 - ID_B1 SINE B4 -168 124 1 5 850 1559 22 43 0 chr4 34809062 34809247 -120820873 + B2_Mm1a SINE B2 1 193 0 5 850 886 70 2 0 chr4 34809449 34809587 -120820533 - B1_Mus2 SINE Alu 0 149 10 5 850 1090 85 89 24 chr4 34809706 34809874 -120820246 + B2_Mm1t SINE B2 1 179 -14 5 850 386 57 0 0 chr4 34809907 34809960 -120820160 + B2_Mm2 SINE B2 49 101 -94 5 850 278 284 65 74 chr4 34810107 34810324 -120819796 + Tigger6b DNA MER2_type 1373 1587 -10 5 850 1024 211 0 14 chr4 34810332 34810544 -120819576 - B3 SINE B2 -7 209 1 6 850 365 228 163 0 chr4 34810634 34810726 -120819394 + PB1D10 SINE Alu 2 108 -9 6 850 509 307 11 43 chr4 34810856 34811058 -120819062 + B3A SINE B2 17 215 -1 6 850 809 179 14 7 chr4 34811255 34811401 -120818719 + B1_Mus2 SINE Alu 1 147 0 6 850 348 83 0 0 chr4 34811414 34811462 -120818658 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 6 850 866 201 119 6 chr4 34811776 34812036 -120818084 - MTD LTR MaLR -8 413 94 6 850 738 159 8 0 chr4 34812036 34812168 -120817952 - URR1B DNA MER1_type 0 225 93 6 850 1278 102 11 0 chr4 34812168 34812344 -120817776 + B2_Mm1t SINE B2 2 179 -14 6 850 327 69 368 37 chr4 34812391 34812497 -120817623 + B2_Mm2 SINE B2 47 187 -8 6 850 504 231 19 0 chr4 34812497 34812601 -120817519 - URR1B DNA MER1_type -117 108 3 6 850 657 154 0 35 chr4 34812603 34812717 -120817403 - MTD LTR MaLR -311 110 1 6 850 477 276 62 51 chr4 34812767 34812962 -120817158 + B3A SINE B2 2 198 0 6 850 777 169 58 14 chr4 34812970 34813108 -120817012 + B1_Mur4 SINE Alu 1 144 -6 6 850 357 221 34 68 chr4 34813415 34813561 -120816559 + RMER19A LTR ERVK 1 141 -596 6 850 1603 191 76 50 chr4 34813559 34813940 -120816180 + RMER20A LTR ERVK 126 516 0 6 850 617 241 236 10 chr4 34814052 34814349 -120815771 - ORR1D1 LTR MaLR -10 364 1 6 850 297 286 39 0 chr4 34814360 34814437 -120815683 - ID4 SINE ID 0 83 4 6 850 554 314 89 8 chr4 34814938 34815185 -120814935 - Lx8 LINE L1 -590 6883 6617 6 850 1106 52 7 0 chr4 34815222 34815358 -120814762 + B1_Mus1 SINE Alu 1 137 -11 6 850 202 0 59 29 chr4 34815358 34815392 -120814728 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 850 798 161 92 0 chr4 34815511 34815685 -120814435 - URR1A DNA MER1_type -2 224 35 6 850 399 221 13 0 chr4 34815900 34815977 -120814143 + B1_Mur4 SINE Alu 1 78 -72 6 850 1480 202 61 30 chr4 34816603 34816965 -120813155 - ORR1D1 LTR MaLR 0 374 2 6 850 1081 74 0 39 chr4 34817010 34817164 -120812956 + B1_Mus1 SINE Alu 1 148 0 6 850 183 146 0 0 chr4 34817166 34817207 -120812913 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 850 260 275 279 6 chr4 34817211 34817372 -120812748 - L1_Mur1 LINE L1 -2142 3744 3540 6 850 324 270 11 22 chr4 34817391 34817507 -120812613 + B1_Mur1 SINE Alu 8 148 -1 6 850 272 260 31 20 chr4 34817507 34817605 -120812515 - L1M5 LINE L1 -2590 3556 3455 6 850 712 245 12 24 chr4 34817675 34817842 -120812278 + B3 SINE B2 40 204 -12 6 850 195 114 0 0 chr4 34817858 34817893 -120812227 + (A)n Simple_repeat Simple_repeat 1 35 0 6 850 228 323 104 0 chr4 34817893 34817989 -120812131 + B1F SINE Alu 4 109 -40 6 850 296 256 13 13 chr4 34818276 34818355 -120811765 + ID2 SINE ID 1 79 -4 6 850 2558 127 70 0 chr4 34818501 34818903 -120811217 + RLTR23 LTR ERV1 1 430 0 6 850 318 164 95 14 chr4 34819428 34819502 -120810618 + ID4_ SINE ID 2 81 -2 6 850 224 176 132 0 chr4 34819754 34819822 -120810298 - B3 SINE B2 -139 77 1 6 850 238 174 90 0 chr4 34819829 34819906 -120810214 - B1F SINE Alu -58 91 1 6 850 282 179 165 13 chr4 34819921 34820000 -120810120 + B1_Mus1 SINE Alu 23 113 -35 6 850 466 211 35 9 chr4 34820013 34820128 -120809992 + B1_Mur1 SINE Alu 31 148 -1 6 850 291 203 0 30 chr4 34820180 34820246 -120809874 - B1F SINE Alu -51 98 35 6 850 1174 49 14 0 chr4 34820666 34820810 -120809310 + B1_Mus1 SINE Alu 3 148 0 6 850 234 91 0 0 chr4 34820810 34820843 -120809277 + (A)n Simple_repeat Simple_repeat 1 33 0 6 850 243 0 0 0 chr4 34820890 34820917 -120809203 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 850 330 209 0 15 chr4 34820973 34821041 -120809079 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 6 850 321 270 0 33 chr4 34821041 34821094 -120809026 + ID2 SINE ID 13 121 -31 6 850 627 234 98 36 chr4 34821868 34822335 -120807785 + L1MA4A LINE L1 4832 5355 -788 6 850 279 0 0 0 chr4 34822344 34822375 -120807745 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 850 481 281 112 25 chr4 34822561 34822846 -120807274 + L1MA4A LINE L1 5595 5904 -399 6 850 1205 55 0 0 chr4 34822956 34823102 -120807018 + B1_Mus2 SINE Alu 2 147 0 6 850 1017 58 0 7 chr4 34823159 34823299 -120806821 + B1_Mus2 SINE Alu 9 147 0 6 850 385 66 33 0 chr4 34823299 34823360 -120806760 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 6 850 326 198 29 136 chr4 34823362 34823443 -120806677 + L1MA4A LINE L1 6102 6174 -126 6 850 1646 26 11 0 chr4 34823443 34823634 -120806486 + B2_Mm1t SINE B2 1 193 0 6 850 326 204 52 130 chr4 34823634 34823727 -120806393 + L1MA4A LINE L1 6175 6272 -28 6 850 255 189 171 26 chr4 34823941 34824017 -120806103 - PB1D7 SINE Alu -3 117 31 6 850 321 346 52 7 chr4 34824039 34824193 -120805927 + RSINE1 SINE B4 1 161 -4 6 850 1466 221 130 78 chr4 34824295 34824556 -120805564 + RLTR18B LTR ERVK 1 292 -220 6 850 826 93 17 8 chr4 34824556 34824675 -120805445 - PB1D9 SINE Alu 0 120 1 6 850 1466 221 130 78 chr4 34824675 34824890 -120805230 + RLTR18B LTR ERVK 293 502 -10 6 850 302 256 111 8 chr4 34824874 34825000 -120805120 + B3 SINE B2 78 216 0 6 850 973 38 104 8 chr4 34825019 34825153 -120804967 + B1_Mus1 SINE Alu 1 147 -1 6 850 32 26 0 0 chr4 34825155 34825194 -120804926 + AT_rich Low_complexity Low_complexity 1 39 0 6 850 2485 48 33 17 chr4 34825263 34825624 -120804496 + MTB LTR MaLR 2 368 -32 6 850 6233 116 37 79 chr4 34825628 34826775 -120803345 + MTB-int LTR MaLR 1 1098 0 6 850 2969 44 33 83 chr4 34826775 34826964 -120803156 + MTB LTR MaLR 1 172 -228 6 850 1182 75 0 0 chr4 34826964 34827111 -120803009 - B1_Mus1 SINE Alu 0 148 2 6 850 2969 44 33 83 chr4 34827111 34827342 -120802778 + MTB LTR MaLR 173 400 0 6 850 286 239 60 0 chr4 34827342 34827409 -120802711 + RSINE1 SINE B4 93 163 -2 6 850 358 208 65 0 chr4 34827742 34827819 -120802301 - B1F1 SINE Alu -45 104 23 6 850 409 159 88 224 chr4 34828111 34828281 -120801839 + B1_Mus1 SINE Alu 2 148 0 6 850 235 240 0 20 chr4 34828523 34828574 -120801546 + ID_B1 SINE B4 82 131 -93 6 850 296 310 20 20 chr4 34828530 34828632 -120801488 + PB1D10 SINE Alu 8 109 -8 6 850 1036 70 0 34 chr4 34828688 34828836 -120801284 + B1_Mus2 SINE Alu 5 147 0 6 850 27 49 0 0 chr4 34829857 34829898 -120800222 + GC_rich Low_complexity Low_complexity 1 41 0 6 850 315 284 128 0 chr4 34830880 34830989 -120799131 + ID_B1 SINE B4 80 202 -22 6 850 327 261 184 37 chr4 34831095 34831258 -120798862 + ID_B1 SINE B4 2 188 -36 6 850 789 204 75 15 chr4 34832392 34832591 -120797529 + B3 SINE B2 1 211 -5 6 850 1055 165 132 17 chr4 34832717 34832951 -120797169 - ORR1B2 LTR MaLR -1 366 106 6 850 604 269 113 67 chr4 34833252 34833598 -120796522 - RMER10A LTR ERVL -76 366 5 6 850 408 40 0 0 chr4 34833667 34833717 -120796403 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 850 1168 56 0 14 chr4 34835265 34835411 -120794709 - B1_Mus1 SINE Alu -2 146 3 6 850 894 100 0 8 chr4 34835428 34835559 -120794561 - B2_Mm2 SINE B2 -65 130 1 6 850 451 155 154 67 chr4 34835559 34835662 -120794458 - URR1A DNA MER1_type -114 112 1 6 850 845 201 110 11 chr4 34835788 34835979 -120794141 - B3 SINE B2 -5 211 2 6 850 477 308 0 0 chr4 34836008 34836125 -120793995 - B1_Mur2 SINE Alu -7 142 26 6 850 1088 278 20 48 chr4 34836646 34837043 -120793077 - RLTR22_Mur LTR ERVK -1048 800 415 6 850 368 175 37 24 chr4 34837106 34837188 -120792932 + RLTR23 LTR ERV1 332 414 -16 6 850 307 250 66 0 chr4 34837208 34837284 -120792836 - B3A SINE B2 -116 82 2 6 850 1233 48 0 0 chr4 34837954 34838101 -120792019 + B1_Mus2 SINE Alu 1 147 0 6 850 180 77 0 0 chr4 34838101 34838127 -120791993 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6 850 449 284 129 6 chr4 34838401 34838571 -120791549 + ORR1D2-int LTR MaLR 1179 1369 -1 6 850 575 275 28 40 chr4 34838572 34838852 -120791268 + ORR1D2 LTR MaLR 1 370 0 6 850 1196 78 54 6 chr4 34839071 34839239 -120790881 + B2_Mm2 SINE B2 2 177 -18 6 850 524 15 15 0 chr4 34839241 34839306 -120790814 + (GGA)n Simple_repeat Simple_repeat 3 68 0 6 850 1214 48 0 0 chr4 34839522 34839669 -120790451 + B1_Mm SINE Alu 1 147 0 6 850 211 253 0 138 chr4 34839693 34839780 -120790340 + RSINE1 SINE B4 28 102 -63 6 850 389 54 18 0 chr4 34839813 34839869 -120790251 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 850 514 256 99 84 chr4 34840017 34840230 -120789890 - B3A SINE B2 0 216 1 6 850 1032 79 57 0 chr4 34840295 34840435 -120789685 - B1_Mus1 SINE Alu 0 148 1 6 850 360 0 0 0 chr4 34840472 34840512 -120789608 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 850 716 269 58 0 chr4 34841863 34842071 -120788049 + MER2 DNA MER2_type 126 345 0 6 850 1203 22 0 0 chr4 34842314 34842451 -120787669 + B1_Mm SINE Alu 1 137 -10 6 850 306 0 0 0 chr4 34842451 34842485 -120787635 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 850 405 258 34 0 chr4 34842545 34842634 -120787486 - ID_B1 SINE B4 -30 194 103 6 850 427 286 125 0 chr4 34842684 34842876 -120787244 + B3 SINE B2 1 216 0 6 850 288 308 0 61 chr4 34842903 34843017 -120787103 + PB1D10 SINE Alu 2 108 -9 6 850 21 36 0 0 chr4 34843243 34843271 -120786849 + AT_rich Low_complexity Low_complexity 1 28 0 6 850 185 132 26 0 chr4 34843402 34843440 -120786680 + (TTG)n Simple_repeat Simple_repeat 1 39 0 6 850 365 261 130 27 chr4 34843454 34843600 -120786520 - RSINE1 SINE B4 -2 163 3 6 850 322 277 0 0 chr4 34844049 34844114 -120786006 - tRNA-Ala-GCY_ tRNA tRNA -6 69 5 6 850 229 261 43 14 chr4 34844382 34844452 -120785668 - PB1D10 SINE Alu -8 109 38 6 850 286 228 165 0 chr4 34844545 34844624 -120785496 - PB1D9 SINE Alu -3 117 26 7 850 712 281 99 53 chr4 34844753 34845035 -120785085 + MTEb LTR MaLR 82 376 -3 7 850 1744 115 23 176 chr4 34845081 34845376 -120784744 - RMER17C LTR ERVK 0 410 180 7 850 1017 62 0 0 chr4 34845376 34845522 -120784598 + (GAGAA)n Simple_repeat Simple_repeat 1 146 0 7 850 1744 115 23 176 chr4 34845522 34845710 -120784410 - RMER17C LTR ERVK -231 179 1 7 850 699 142 47 54 chr4 34845987 34846136 -120783984 - B1_Mur3 SINE Alu 0 149 2 7 850 239 152 25 25 chr4 34846268 34846330 -120783790 + (TTTG)n Simple_repeat Simple_repeat 1 62 0 7 850 1062 103 0 40 chr4 34846330 34846482 -120783638 - B1_Mus1 SINE Alu -2 146 1 7 850 239 152 25 25 chr4 34846482 34846500 -120783620 + (TTTG)n Simple_repeat Simple_repeat 2 20 0 7 850 430 246 66 0 chr4 34846510 34846632 -120783488 + B1F1 SINE Alu 11 140 -9 7 850 255 61 0 0 chr4 34846632 34846665 -120783455 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 7 850 578 254 65 0 chr4 34846934 34847072 -120783048 - B1F2 SINE Alu 0 149 3 7 850 415 297 0 0 chr4 34847350 34847451 -120782669 + B1F SINE Alu 19 119 -30 7 850 1619 273 57 42 chr4 34847464 34848176 -120781944 + Lx9 LINE L1 5345 6095 -1601 7 850 390 42 0 0 chr4 34848230 34848278 -120781842 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 7 850 312 143 0 0 chr4 34848285 34848341 -120781779 + (TATG)n Simple_repeat Simple_repeat 3 58 0 7 850 2113 95 176 0 chr4 34848359 34848768 -120781352 - RLTR47_MM LTR ERV1 -51 481 1 7 850 237 167 25 13 chr4 34848850 34848929 -120781191 + (TA)n Simple_repeat Simple_repeat 1 80 0 7 850 329 277 172 25 chr4 34849018 34849181 -120780939 + ID_B1 SINE B4 2 188 -36 7 850 676 133 0 48 chr4 34849801 34849927 -120780193 + B2_Mm2 SINE B2 3 122 -73 7 850 632 37 0 0 chr4 34849927 34850008 -120780112 + B1_Mus1 SINE Alu 36 116 -32 7 850 627 128 55 0 chr4 34849998 34850107 -120780013 - B1_Mus2 SINE Alu -32 115 1 7 850 3214 177 122 12 chr4 34850204 34850972 -120779148 - RLTR25B LTR ERVK -175 853 1 7 850 765 65 19 0 chr4 34850972 34851075 -120779045 - B2_Mm2 SINE B2 -83 112 8 7 850 216 250 19 0 chr4 34851105 34851157 -120778963 + ID4 SINE ID 1 53 -30 7 850 803 187 55 6 chr4 34852740 34852923 -120777197 + B2_Mm2 SINE B2 1 192 -3 7 850 1092 66 0 0 chr4 34852924 34853060 -120777060 + B1_Mus1 SINE Alu 5 140 -8 7 850 318 26 0 0 chr4 34853331 34853370 -120776750 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 7 850 448 239 106 0 chr4 34853440 34853553 -120776567 + RSINE1 SINE B4 2 126 -39 7 850 1743 126 63 0 chr4 34853560 34853861 -120776259 + ORR1A2 LTR MaLR 8 327 0 7 850 781 126 105 0 chr4 34853862 34854005 -120776115 + ORR1A2-int LTR MaLR 2 159 -1804 7 850 1031 95 0 0 chr4 34854024 34854161 -120775959 - B1_Mus2 SINE Alu -9 138 2 7 850 270 336 22 80 chr4 34854787 34855013 -120775107 + Charlie7a DNA MER1_type 45 257 -15 7 850 1106 147 17 22 chr4 34855022 34855203 -120774917 + B2_Mm2 SINE B2 2 181 -14 7 850 276 73 0 0 chr4 34855238 34855279 -120774841 + B2_Mm1a SINE B2 127 167 -26 7 850 21 0 0 0 chr4 34855280 34855301 -120774819 + AT_rich Low_complexity Low_complexity 1 21 0 7 850 1167 51 0 0 chr4 34855909 34856047 -120774073 + B1_Mus1 SINE Alu 1 138 -10 7 850 266 0 0 29 chr4 34856047 34856082 -120774038 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 850 274 321 28 19 chr4 34856124 34856184 -120773936 + PB1D10 SINE Alu 1 109 -8 7 850 276 167 21 0 chr4 34856184 34856232 -120773888 + ID_B1 SINE B4 168 216 -8 7 850 993 88 51 0 chr4 34856243 34856380 -120773740 + B1_Mus1 SINE Alu 5 148 0 7 850 192 163 0 0 chr4 34856380 34856423 -120773697 + A-rich Low_complexity Low_complexity 6 48 0 7 850 1097 57 43 0 chr4 34856435 34856576 -120773544 + B1_Mus2 SINE Alu 1 147 0 7 850 1074 103 0 20 chr4 34856760 34856909 -120773211 + B1_Mus2 SINE Alu 2 147 0 7 850 28 0 0 0 chr4 34856911 34856939 -120773181 + AT_rich Low_complexity Low_complexity 1 28 0 7 850 379 261 26 18 chr4 34856993 34857106 -120773014 - RLTR23 LTR ERV1 0 430 317 7 850 916 98 7 27 chr4 34857422 34857569 -120772551 - B2_Mm2 SINE B2 -51 144 1 7 850 1477 119 4 67 chr4 34857795 34858064 -120772056 + RMER16 LTR ERVK 70 321 -212 7 850 745 139 0 44 chr4 34858063 34858198 -120771922 - MTC LTR MaLR -292 129 1 7 850 189 265 23 0 chr4 34858279 34858411 -120771709 + (CCCCAA)n Simple_repeat Simple_repeat 5 139 0 7 850 468 287 11 17 chr4 34858512 34858689 -120771431 + (CCCCAA)n Simple_repeat Simple_repeat 2 177 0 7 850 1275 58 0 0 chr4 34858745 34858917 -120771203 - BGLII LTR ERVK -249 172 1 7 850 1122 240 39 17 chr4 34859655 34859971 -120770149 + L1_Rod LINE L1 4827 5118 -729 7 850 7674 167 16 14 chr4 34859983 34860824 -120769296 + Lx6 LINE L1 4522 5353 -527 7 850 700 231 243 0 chr4 34860824 34860997 -120769123 + B3 SINE B2 2 216 0 7 850 7674 165 42 10 chr4 34860997 34861604 -120768516 + Lx6 LINE L1 5354 5982 -1478 7 850 441 129 0 0 chr4 34861604 34861674 -120768446 + (CGTG)n Simple_repeat Simple_repeat 1 70 0 7 850 263 240 0 0 chr4 34862146 34862196 -120767924 + B3A SINE B2 94 143 -55 7 850 342 0 0 0 chr4 34862200 34862238 -120767882 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 850 348 24 0 0 chr4 34862238 34862278 -120767842 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 850 271 231 31 0 chr4 34862411 34862476 -120767644 + B1_Mur1 SINE Alu 77 143 -6 7 850 212 116 233 0 chr4 34862594 34862637 -120767483 + B1_Mur2 SINE Alu 82 134 -15 7 850 2420 180 127 31 chr4 34862841 34863362 -120766758 + RMER15 LTR ERVL 3 573 -2 7 850 5473 63 6 3 chr4 34863523 34864212 -120765908 - L1Md_F2 LINE L1 0 6582 5892 7 850 1190 43 0 0 chr4 34864251 34864389 -120765731 + B1_Mus1 SINE Alu 2 139 -9 7 850 351 0 0 0 chr4 34864389 34864428 -120765692 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 850 244 220 0 0 chr4 34864513 34864563 -120765557 + PB1D9 SINE Alu 1 50 -70 7 851 336 125 29 0 chr4 34865305 34865379 -120764741 + B1F SINE Alu 47 149 0 7 851 889 57 8 0 chr4 34865654 34865776 -120764344 - B1_Mm SINE Alu 0 147 25 7 851 603 165 0 0 chr4 34866074 34866183 -120763937 + GA-rich Low_complexity Low_complexity 2 110 0 7 851 207 0 0 0 chr4 34867060 34867083 -120763037 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 851 549 184 0 0 chr4 34867084 34867193 -120762927 + GA-rich Low_complexity Low_complexity 1 109 0 7 851 1238 41 0 0 chr4 34867417 34867564 -120762556 + B1_Mus1 SINE Alu 2 148 0 7 851 621 0 0 0 chr4 34867835 34867904 -120762216 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 7 851 759 22 0 0 chr4 34867913 34868002 -120762118 + (TTCTC)n Simple_repeat Simple_repeat 2 90 0 7 851 1431 60 0 5 chr4 34868724 34868939 -120761181 + (TTCTCC)n Simple_repeat Simple_repeat 1 214 0 7 851 1388 77 39 0 chr4 34869185 34869366 -120760754 - B2_Mm2 SINE B2 -6 189 2 7 851 207 0 0 0 chr4 34869462 34869485 -120760635 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 851 552 15 0 0 chr4 34869485 34869549 -120760571 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 851 349 273 22 79 chr4 34869710 34869819 -120760301 + RMER5 LTR ERV1 404 512 -22 7 851 2275 158 8 5 chr4 34869819 34870200 -120759920 - RLTR14 LTR ERV1 0 382 1 7 851 349 273 22 79 chr4 34870200 34870229 -120759891 + RMER5 LTR ERV1 513 534 0 7 851 1153 42 28 7 chr4 34870631 34870775 -120759345 - B1_Mm SINE Alu 0 147 1 7 851 321 26 0 0 chr4 34871279 34871317 -120758803 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 851 222 188 0 45 chr4 34871533 34871622 -120758498 + (TTAGGG)n Simple_repeat Simple_repeat 5 89 0 7 851 300 142 17 58 chr4 34871663 34871783 -120758337 + (TTAGGG)n Simple_repeat Simple_repeat 4 118 0 7 851 620 263 38 24 chr4 34871891 34872101 -120758019 + B3 SINE B2 4 216 0 7 851 1214 35 7 0 chr4 34872531 34872674 -120757446 - B1_Mus1 SINE Alu 0 148 5 7 851 1956 108 3 79 chr4 34872911 34873211 -120756909 + ORR1A3 LTR MaLR 4 279 -47 7 851 1562 32 32 0 chr4 34873211 34873396 -120756724 + B2_Mm1a SINE B2 2 192 -1 7 851 1956 108 3 79 chr4 34873396 34873436 -120756684 + ORR1A3 LTR MaLR 280 318 -8 7 851 1002 59 0 0 chr4 34873642 34873777 -120756343 - B1_Mus1 SINE Alu 0 148 14 7 851 259 217 67 0 chr4 34873677 34873797 -120756323 - ORR1C1-int LTR MaLR -750 759 632 7 851 680 244 89 0 chr4 34873865 34874045 -120756075 + B3A SINE B2 2 197 -1 7 851 263 279 25 25 chr4 34874512 34874593 -120755527 - B3A SINE B2 -91 107 27 7 851 686 275 112 9 chr4 34874661 34874991 -120755129 + MLT1D LTR MaLR 90 453 -52 7 851 381 317 54 6 chr4 34875087 34875255 -120754865 - Tigger5 DNA MER2_type -6 2400 2225 7 851 386 265 6 24 chr4 34875287 34875615 -120754505 + (CATATA)n Simple_repeat Simple_repeat 1 321 0 7 851 768 162 21 7 chr4 34875623 34875766 -120754354 - ORR1C1 LTR MaLR -9 369 225 7 851 627 55 0 0 chr4 34875814 34875905 -120754215 - RLTRETN_Mm LTR ERVK -231 91 1 7 851 501 139 0 0 chr4 34875905 34875976 -120754144 - B1_Mus2 SINE Alu -74 73 3 7 851 344 171 12 0 chr4 34876015 34876097 -120754023 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 851 463 286 24 12 chr4 34876109 34876279 -120753841 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 7 851 523 313 9 16 chr4 34876293 34876706 -120753414 + (CATATA)n Simple_repeat Simple_repeat 1 410 0 7 851 389 313 5 48 chr4 34876649 34876837 -120753283 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 851 352 285 9 18 chr4 34876876 34877449 -120752671 + (CATATA)n Simple_repeat Simple_repeat 1 567 0 7 851 206 234 16 44 chr4 34877480 34877663 -120752457 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 7 851 308 346 7 7 chr4 34877689 34877826 -120752294 + (CA)n Simple_repeat Simple_repeat 2 138 0 7 851 407 269 3 34 chr4 34877840 34878194 -120751926 + (CATATA)n Simple_repeat Simple_repeat 1 342 0 7 851 229 250 40 11 chr4 34878214 34878388 -120751732 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 7 851 1285 28 0 0 chr4 34878393 34878538 -120751582 + B1_Mm SINE Alu 3 147 0 7 851 301 301 0 21 chr4 34878558 34878653 -120751467 + (CATA)n Simple_repeat Simple_repeat 4 96 0 8 851 465 288 85 72 chr4 34878695 34879013 -120751107 + RLTR17 LTR ERVK 125 446 -246 8 851 282 288 4 26 chr4 34879301 34879573 -120750547 + (CATA)n Simple_repeat Simple_repeat 1 265 0 8 851 300 272 85 43 chr4 34880511 34880722 -120749398 + MLT1B LTR MaLR 129 348 -42 8 851 3959 167 8 8 chr4 34881304 34881961 -120748159 - Lx7 LINE L1 -649 7047 6391 8 851 180 235 9 38 chr4 34882007 34882113 -120748007 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 8 851 453 268 0 53 chr4 34882132 34882379 -120747741 + (TATG)n Simple_repeat Simple_repeat 1 233 0 8 851 283 0 0 67 chr4 34882406 34882451 -120747669 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 851 549 152 9 71 chr4 34882451 34882496 -120747624 - B1_Mus2 SINE Alu -8 139 101 8 851 7588 38 39 25 chr4 34882496 34883022 -120747098 - RLTR13A2 LTR ERVK 0 958 414 8 851 228 67 0 0 chr4 34883030 34883060 -120747060 + (CATG)n Simple_repeat Simple_repeat 2 31 0 8 851 1709 16 0 5 chr4 34883060 34883244 -120746876 - B2_Mm1a SINE B2 -8 185 2 8 851 7588 38 39 25 chr4 34883244 34883662 -120746458 - RLTR13A2 LTR ERVK -545 413 1 8 851 549 152 9 71 chr4 34883662 34883729 -120746391 - B1_Mus2 SINE Alu -47 100 34 8 851 341 202 5 68 chr4 34883796 34883987 -120746133 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 8 851 358 287 0 27 chr4 34883992 34884103 -120746017 + (TATG)n Simple_repeat Simple_repeat 1 108 0 8 851 3227 31 26 3 chr4 34884103 34884488 -120745632 + MTA_Mm LTR MaLR 1 394 -2 8 851 3975 72 63 2 chr4 34884490 34885088 -120745032 + MTA_Mm-int LTR MaLR 1 635 -463 8 851 599 310 100 19 chr4 34885081 34885390 -120744730 - MLT1D LTR MaLR -47 458 125 8 851 1675 219 119 11 chr4 34885476 34885665 -120744455 - Lx7 LINE L1 -1301 6395 6196 8 851 645 21 62 0 chr4 34885665 34885761 -120744359 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 8 851 1675 219 119 11 chr4 34885761 34886024 -120744096 - Lx7 LINE L1 -1501 6195 5896 8 851 1174 207 48 31 chr4 34886012 34886301 -120743819 + Lx7 LINE L1 5594 5887 -1809 8 851 4560 165 68 23 chr4 34886298 34886612 -120743508 - L1_Mur3 LINE L1 -1717 4163 3849 8 851 423 0 0 0 chr4 34886621 34886668 -120743452 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 851 1170 35 14 14 chr4 34886668 34886805 -120743315 - B1_Mm SINE Alu -8 139 1 8 851 4560 165 68 23 chr4 34886805 34887480 -120742640 - L1_Mur3 LINE L1 -2032 3848 3130 8 851 614 219 30 36 chr4 34888649 34888815 -120741305 - L1_Mur3 LINE L1 -2720 3160 2996 8 851 7777 147 48 89 chr4 34888816 34890322 -120739798 - Lx5 LINE L1 -35 7015 5460 8 851 883 62 0 0 chr4 34890322 34890434 -120739686 - B1_Mus1 SINE Alu 0 148 37 8 851 7777 147 48 89 chr4 34890434 34890606 -120739514 - Lx5 LINE L1 -35 5459 5281 8 851 5592 123 20 15 chr4 34890614 34891458 -120738662 - Lx4A LINE L1 -29 7029 6182 8 851 4139 89 10 7 chr4 34891465 34892074 -120738046 - Lx5 LINE L1 -1861 4016 3406 8 851 1673 31 0 0 chr4 34892102 34892293 -120737827 + B2_Mm1a SINE B2 2 192 -1 8 851 2339 86 25 6 chr4 34892559 34892923 -120737197 - Lx5 LINE L1 -2461 3416 3046 8 851 522 46 0 0 chr4 34892923 34892988 -120737132 + (TTC)n Simple_repeat Simple_repeat 1 65 0 8 851 485 185 55 40 chr4 34892989 34893133 -120736987 - Lx5 LINE L1 -2787 3090 2945 8 851 3289 226 107 20 chr4 34893156 34894237 -120735883 - Lx5 LINE L1 -4362 1518 331 8 851 1836 192 0 62 chr4 34894322 34894710 -120735410 - ORR1B2 LTR MaLR -3 364 1 8 851 1129 137 5 27 chr4 34894981 34895169 -120734951 + ORR1A4 LTR MaLR 94 277 -52 8 851 1458 208 161 118 chr4 34895541 34896168 -120733952 + Lx9 LINE L1 5947 6600 -1044 8 851 495 0 0 0 chr4 34898034 34898089 -120732031 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 851 279 0 0 0 chr4 34898288 34898319 -120731801 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 851 23 0 0 0 chr4 34898387 34898410 -120731710 + AT_rich Low_complexity Low_complexity 1 23 0 8 851 1088 36 21 14 chr4 34899574 34899716 -120730404 + B1_Mus2 SINE Alu 5 147 0 8 851 274 260 0 38 chr4 34900218 34900298 -120729822 + G-rich Low_complexity Low_complexity 5 81 0 8 851 699 75 0 0 chr4 34901398 34901492 -120728628 + (TC)n Simple_repeat Simple_repeat 1 94 0 8 851 185 0 0 39 chr4 34901492 34901518 -120728602 + (TCC)n Simple_repeat Simple_repeat 1 25 0 8 851 219 293 103 24 chr4 34901979 34902105 -120728015 + L2c LINE L2 3005 3140 -247 8 851 567 162 36 0 chr4 34902199 34902310 -120727810 + ORR1D1 LTR MaLR 1 115 -259 8 851 1575 37 16 0 chr4 34902773 34902962 -120727158 - B2_Mm1a SINE B2 0 193 2 8 851 30 0 0 0 chr4 34903056 34903086 -120727034 + AT_rich Low_complexity Low_complexity 1 30 0 8 851 1651 32 0 0 chr4 34903086 34903272 -120726848 - B2_Mm1a SINE B2 -7 186 1 8 851 2047 217 95 19 chr4 34903277 34903794 -120726326 - RLTR12A LTR ERVK -12 556 1 8 851 244 196 88 18 chr4 34903866 34903923 -120726197 + L2c LINE L2 3325 3385 -2 8 851 250 217 0 21 chr4 34904374 34904421 -120725699 + B1F1 SINE Alu 7 52 -97 8 851 590 217 55 20 chr4 34905344 34905490 -120724630 + RSINE1 SINE B4 3 153 -12 8 851 469 281 0 0 chr4 34905509 34905623 -120724497 + Lx6 LINE L1 7208 7321 -139 8 851 476 16 16 0 chr4 34905644 34905705 -120724415 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 851 253 227 39 26 chr4 34906010 34906087 -120724033 + L1M5 LINE L1 5571 5648 -546 8 851 808 227 121 3 chr4 34906055 34906310 -120723810 + Lx9 LINE L1 5553 5872 -1772 8 851 1469 48 27 5 chr4 34906310 34906469 -120723651 + B2_Mm1a SINE B2 2 160 -33 8 851 387 0 0 0 chr4 34906469 34906512 -120723608 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 8 851 1469 48 27 5 chr4 34906512 34906540 -120723580 + B2_Mm1a SINE B2 161 193 0 8 851 628 269 122 45 chr4 34906540 34906600 -120723520 + Lx9 LINE L1 5870 5925 -1548 8 851 207 260 0 49 chr4 34906667 34906748 -120723372 + GA-rich Low_complexity Low_complexity 2 78 0 8 851 267 54 0 0 chr4 34907730 34907767 -120722353 + (C)n Simple_repeat Simple_repeat 1 37 0 8 851 254 302 56 92 chr4 34908894 34908910 -120721210 + B4 SINE B4 69 79 -213 8 851 436 246 8 83 chr4 34908910 34909043 -120721077 + B1_Mur1 SINE Alu 2 124 -25 8 851 1858 162 22 20 chr4 34910545 34910954 -120719166 + RMER17C LTR ERVK 1 410 0 8 851 314 258 50 70 chr4 34912379 34912479 -120717641 + MTE2b LTR MaLR 1 98 -281 8 851 921 279 88 31 chr4 34912478 34912796 -120717324 + MTE2b LTR MaLR 39 374 -5 8 851 1422 171 179 10 chr4 34913155 34913467 -120716653 - ORR1B2 LTR MaLR -2 365 1 8 851 416 226 60 9 chr4 34913742 34913858 -120716262 + RMER15 LTR ERVL 454 575 0 8 851 405 264 127 87 chr4 34914562 34914895 -120715225 - MER47B DNA MER2_type 0 418 1 8 851 566 307 45 45 chr4 34915018 34915219 -120714901 - B4A SINE B4 -82 210 10 8 851 361 256 67 0 chr4 34915304 34915394 -120714726 - MIRb SINE MIR -121 147 52 8 851 353 308 43 37 chr4 34915441 34915589 -120714531 + MER58B DNA MER1_type 1 150 -191 8 851 1473 57 6 0 chr4 34915589 34915766 -120714354 - B2_Mm1t SINE B2 -14 179 2 8 851 353 308 43 37 chr4 34915766 34915779 -120714341 + MER58B DNA MER1_type 151 163 -178 8 851 586 242 100 118 chr4 34915786 34915878 -120714242 - B3 SINE B2 0 216 151 8 851 297 0 0 0 chr4 34915878 34915911 -120714209 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 851 586 242 100 118 chr4 34915911 34916038 -120714082 - B3 SINE B2 -66 150 2 8 851 384 333 60 28 chr4 34916038 34916220 -120713900 + MER58B DNA MER1_type 150 337 -4 8 851 386 206 161 11 chr4 34916814 34916907 -120713213 - PB1D10 SINE Alu 0 117 11 8 851 555 311 32 123 chr4 34916922 34917160 -120712960 + B4A SINE B4 4 214 -78 8 851 1082 216 25 0 chr4 34917160 34917364 -120712756 + B3 SINE B2 1 209 -7 8 851 555 311 32 123 chr4 34917364 34917441 -120712679 + B4A SINE B4 215 290 -2 8 851 306 106 0 0 chr4 34917446 34917493 -120712627 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 851 25 0 0 0 chr4 34917688 34917713 -120712407 + AT_rich Low_complexity Low_complexity 1 25 0 8 851 269 109 0 21 chr4 34917792 34917839 -120712281 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 851 1241 55 0 0 chr4 34917940 34918086 -120712034 + B1_Mus1 SINE Alu 2 147 -1 8 851 190 45 0 120 chr4 34918092 34918142 -120711978 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 8 851 254 235 20 0 chr4 34918894 34918945 -120711175 + (CACG)n Simple_repeat Simple_repeat 1 52 0 8 851 181 212 100 57 chr4 34919322 34919392 -120710728 + L4 LINE RTE 373 445 -1584 8 851 1412 196 136 55 chr4 34919486 34919832 -120710288 + ORR1D1 LTR MaLR 1 374 0 8 851 624 342 108 32 chr4 34919909 34920281 -120709839 - Lx8 LINE L1 -84 7389 6990 8 851 797 208 7 0 chr4 34920718 34920872 -120709248 + ID_B1 SINE B4 10 164 -60 8 851 287 325 0 24 chr4 34920943 34921028 -120709092 + B4A SINE B4 123 205 -87 8 851 267 31 0 0 chr4 34921028 34921060 -120709060 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 851 288 265 0 56 chr4 34921147 34921219 -120708901 + ID_B1 SINE B4 150 217 -7 8 851 253 314 68 10 chr4 34921243 34921346 -120708774 + MER5B DNA MER1_type 68 176 -2 8 851 234 294 117 21 chr4 34921361 34921455 -120708665 - MER5B DNA MER1_type -3 175 73 8 851 811 242 78 59 chr4 34922048 34922368 -120707752 - L1ME1 LINE L1 -1 6178 5853 8 851 234 333 40 0 chr4 34922816 34922915 -120707205 - L2b LINE L2 -230 3145 3043 8 851 724 179 7 46 chr4 34922938 34923090 -120707030 + RLTR15 LTR ERVK 1 146 -213 8 851 226 226 29 88 chr4 34923114 34923182 -120706938 + RLTR15 LTR ERVK 141 204 -155 8 851 1661 157 47 74 chr4 34924276 34924614 -120705506 + ORR1A4 LTR MaLR 1 329 0 8 851 1659 217 9 107 chr4 34924681 34925110 -120705010 + MTD LTR MaLR 19 405 -14 8 851 279 188 55 55 chr4 34925247 34925320 -120704800 + PB1D10 SINE Alu 42 114 -3 8 851 181 260 11 115 chr4 34926242 34926329 -120703791 + L4 LINE RTE 1232 1309 -720 8 851 465 250 0 44 chr4 34926760 34926873 -120703247 + PB1D10 SINE Alu 10 117 0 8 851 366 23 0 0 chr4 34927401 34927444 -120702676 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 851 254 285 80 0 chr4 34927681 34927770 -120702350 - MIRc SINE MIR -116 152 53 8 851 544 256 39 8 chr4 34928308 34928438 -120701682 + RSINE1 SINE B4 1 134 -31 8 851 208 194 0 0 chr4 34929951 34929987 -120700133 - MIR SINE MIR -2 260 225 8 851 387 278 59 22 chr4 34930209 34930345 -120699775 - B1F1 SINE Alu -7 142 2 8 851 1380 69 26 5 chr4 34931308 34931498 -120698622 - B2_Mm2 SINE B2 0 195 2 8 851 282 293 165 122 chr4 34931680 34931983 -120698137 + MER74A LTR ERVL 28 343 -215 8 851 1016 202 64 0 chr4 34932408 34932611 -120697509 + B3 SINE B2 1 216 0 8 851 430 330 60 15 chr4 34933488 34933688 -120696432 - Charlie8 DNA MER1_type -2187 241 33 8 851 309 345 108 28 chr4 34934009 34934221 -120695899 + MIRb SINE MIR 32 260 -8 8 851 220 233 84 44 chr4 34934815 34934928 -120695192 - MIR SINE MIR -85 183 53 9 851 225 94 0 0 chr4 34935117 34935149 -120694971 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 851 245 355 165 11 chr4 34935279 34935467 -120694653 - MIRb SINE MIR -22 246 30 9 851 288 0 0 0 chr4 34936450 34936482 -120693638 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 851 310 176 24 0 chr4 34936493 34936578 -120693542 + (TA)n Simple_repeat Simple_repeat 1 87 0 9 851 1360 89 16 10 chr4 34937350 34937542 -120692578 - B2_Mm2 SINE B2 -2 193 1 9 851 414 57 0 0 chr4 34939061 34939114 -120691006 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 851 188 359 13 0 chr4 34939296 34939374 -120690746 + L2b LINE L2 3255 3333 -42 9 851 203 61 0 29 chr4 34940523 34940557 -120689563 + (CCCCCG)n Simple_repeat Simple_repeat 3 35 0 9 851 266 176 0 42 chr4 34941201 34941272 -120688848 + GA-rich Low_complexity Low_complexity 3 70 0 9 851 258 105 0 0 chr4 34941901 34941939 -120688181 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 9 851 1117 44 0 0 chr4 34941941 34942078 -120688042 - B1_Mus2 SINE Alu 0 147 11 9 851 384 22 0 0 chr4 34942120 34942165 -120687955 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 851 842 239 28 14 chr4 34942234 34942446 -120687674 - B3 SINE B2 -1 215 1 9 851 21 36 0 0 chr4 34942452 34942480 -120687640 + AT_rich Low_complexity Low_complexity 1 28 0 9 851 425 282 20 53 chr4 34942492 34942642 -120687478 - B3A SINE B2 -53 145 1 9 851 365 296 117 21 chr4 34942659 34942804 -120687316 + L2c LINE L2 3092 3250 -137 9 851 227 104 0 59 chr4 34942842 34942893 -120687227 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 9 851 390 241 81 99 chr4 34943093 34943254 -120686866 + MLT1A1 LTR MaLR 237 394 -14 9 851 205 86 0 28 chr4 34943396 34943432 -120686688 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 9 851 234 143 0 0 chr4 34944414 34944463 -120685657 + (A)n Simple_repeat Simple_repeat 1 49 0 9 851 1268 34 0 0 chr4 34944467 34944614 -120685506 + B1_Mus2 SINE Alu 1 147 0 9 851 258 278 128 9 chr4 34944887 34944996 -120685124 + L1MC3 LINE L1 6735 6856 -929 9 851 207 0 0 0 chr4 34945131 34945154 -120684966 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 851 1069 285 108 11 chr4 34945193 34945740 -120684380 + L1MC3 LINE L1 6877 7476 -309 9 851 258 308 34 0 chr4 34945834 34945951 -120684169 + L1MC3 LINE L1 7485 7605 -180 9 851 252 0 0 0 chr4 34946057 34946085 -120684035 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 851 285 29 0 0 chr4 34946085 34946119 -120684001 + (CATA)n Simple_repeat Simple_repeat 2 35 0 9 851 971 76 14 0 chr4 34946316 34946460 -120683660 + URR1A DNA MER1_type 81 226 0 9 851 401 248 35 52 chr4 34946460 34946491 -120683629 - CYRA11_Mm Unknown Y-chromosome -444 173 146 9 851 283 246 0 0 chr4 34946464 34946521 -120683599 - MER45R DNA Tip100 -1475 106 50 9 851 669 263 20 51 chr4 34947202 34947398 -120682722 - B3A SINE B2 -1 197 8 9 851 444 19 0 0 chr4 34947403 34947456 -120682664 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 851 445 323 86 25 chr4 34947495 34947692 -120682428 - B3 SINE B2 -6 210 2 9 851 318 254 0 14 chr4 34947701 34947773 -120682347 - ID4 SINE ID 0 83 13 9 851 31 44 0 0 chr4 34948726 34948771 -120681349 + AT_rich Low_complexity Low_complexity 1 45 0 9 851 227 132 0 26 chr4 34948803 34948842 -120681278 - PB1D9 SINE Alu -82 38 1 9 851 24 67 0 0 chr4 34948842 34948887 -120681233 + AT_rich Low_complexity Low_complexity 1 45 0 9 851 209 238 0 0 chr4 34948985 34949027 -120681093 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 851 1231 35 0 0 chr4 34949114 34949257 -120680863 + B1_Mm SINE Alu 2 144 -3 9 851 306 357 27 0 chr4 34949711 34949823 -120680297 + MER5A DNA MER1_type 1 115 -74 9 851 1767 118 30 71 chr4 34950276 34950614 -120679506 - ORR1A2 LTR MaLR 0 327 4 9 851 296 244 195 30 chr4 34950732 34950901 -120679219 - MIR SINE MIR -10 252 56 9 851 207 100 0 0 chr4 34951113 34951143 -120678977 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 851 237 178 0 0 chr4 34952313 34952358 -120677762 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 851 25 0 0 0 chr4 34952974 34952999 -120677121 + AT_rich Low_complexity Low_complexity 1 25 0 9 851 498 33 0 0 chr4 34954952 34955012 -120675108 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 9 851 321 169 0 0 chr4 34955014 34955073 -120675047 + CT-rich Low_complexity Low_complexity 1 59 0 9 851 421 282 73 0 chr4 34955105 34955229 -120674891 - ID_B1 SINE B4 -18 206 74 9 851 292 313 142 7 chr4 34955371 34955519 -120674601 + MIR SINE MIR 34 201 -61 9 851 902 79 0 0 chr4 34955533 34955659 -120674461 + B1_Mus1 SINE Alu 23 148 0 9 851 258 297 98 41 chr4 34956045 34956168 -120673952 + MER20 DNA MER1_type 36 165 -54 9 851 621 236 62 41 chr4 34956213 34956407 -120673713 + B3A SINE B2 1 198 0 9 851 1549 189 96 35 chr4 34956422 34956817 -120673303 + MTD LTR MaLR 1 419 0 9 851 617 0 0 14 chr4 34957459 34957533 -120672587 + (GAGAA)n Simple_repeat Simple_repeat 5 77 0 9 851 588 269 31 44 chr4 34957743 34957972 -120672148 + MLT1A0 LTR MaLR 1 226 -139 9 851 1405 84 5 5 chr4 34958054 34958246 -120671874 + B2_Mm1a SINE B2 2 193 0 9 851 835 266 25 29 chr4 34958258 34958502 -120671618 - B4A SINE B4 -49 243 1 9 851 215 244 17 0 chr4 34958831 34958913 -120671207 + A-rich Low_complexity Low_complexity 1 83 0 9 851 396 0 0 0 chr4 34959881 34959925 -120670195 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 851 407 284 101 7 chr4 34960614 34960763 -120669357 - MER2 DNA MER2_type -40 305 143 9 851 918 233 14 14 chr4 34961062 34961271 -120668849 - B3 SINE B2 -7 209 1 9 851 601 260 100 30 chr4 34961629 34961859 -120668261 + L1MA7 LINE L1 6001 6246 -45 9 851 7100 59 16 0 chr4 34962096 34962975 -120667145 + RLTR13B1 LTR ERVK 1 893 0 9 851 1848 41 16 0 chr4 34963266 34963512 -120666608 - ORR1A2 LTR MaLR -77 250 1 9 851 470 214 0 19 chr4 34965731 34965836 -120664284 + B1_Mur2 SINE Alu 47 149 0 9 851 270 0 0 0 chr4 34966147 34966177 -120663943 + (T)n Simple_repeat Simple_repeat 1 30 0 9 851 209 358 80 16 chr4 34968262 34968387 -120661733 + MIRb SINE MIR 128 260 -8 9 851 278 296 159 0 chr4 34968468 34968600 -120661520 + L2b LINE L2 3219 3371 -4 9 851 1002 128 13 7 chr4 34968806 34968955 -120661165 - B1_Mur4 SINE Alu 0 150 1 9 851 333 118 0 0 chr4 34968998 34969049 -120661071 + (TTTTC)n Simple_repeat Simple_repeat 3 53 0 9 851 357 335 50 99 chr4 34971747 34971929 -120658191 + B4A SINE B4 2 174 -118 9 851 2023 275 61 25 chr4 34972085 34972808 -120657312 + L1MB4 LINE L1 5430 6178 -2 9 851 222 184 92 0 chr4 34973118 34973216 -120656904 + (AGTAG)n Simple_repeat Simple_repeat 2 108 0 9 851 293 211 54 30 chr4 34973180 34973346 -120656774 + (TATAG)n Simple_repeat Simple_repeat 2 171 0 9 851 400 198 71 71 chr4 34973447 34973545 -120656575 + B4A SINE B4 1 98 -194 9 851 435 277 20 19 chr4 34973641 34973829 -120656291 + L1MC2 LINE L1 5987 6171 -173 9 851 647 299 16 32 chr4 34973841 34974031 -120656089 + B4A SINE B4 106 292 0 9 851 22 0 0 0 chr4 34974250 34974272 -120655848 + AT_rich Low_complexity Low_complexity 1 22 0 9 851 304 182 61 0 chr4 34974277 34974343 -120655777 - L1ME4a LINE L1 -2 6122 6053 9 851 204 111 0 0 chr4 34975151 34975187 -120654933 + (CAA)n Simple_repeat Simple_repeat 3 38 0 9 851 258 308 114 47 chr4 34975285 34975496 -120654624 + L1MC2 LINE L1 6111 6335 -9 9 851 616 210 14 21 chr4 34975692 34975833 -120654287 + B1_Mur1 SINE Alu 2 141 -8 9 851 549 68 0 0 chr4 34975834 34975908 -120654212 + (CAAAC)n Simple_repeat Simple_repeat 4 77 0 9 851 2441 74 19 78 chr4 34976222 34976632 -120653488 + MTB LTR MaLR 10 395 -5 9 851 258 32 0 0 chr4 34977185 34977216 -120652904 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 9 851 368 258 43 0 chr4 34980084 34980177 -120649943 + PB1D10 SINE Alu 18 114 -3 9 851 499 281 75 40 chr4 34980179 34980420 -120649700 + B4A SINE B4 1 250 -42 9 851 474 49 0 0 chr4 34980449 34980510 -120649610 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 851 4708 60 2 14 chr4 34980543 34981137 -120648983 + LTRIS_Mus LTR ERV1 1 587 0 9 851 481 269 26 38 chr4 34982682 34982851 -120647269 - B3 SINE B2 -30 168 1 9 851 324 0 0 0 chr4 34982862 34982898 -120647222 + (A)n Simple_repeat Simple_repeat 1 36 0 9 851 694 200 176 6 chr4 34982903 34983079 -120647041 + B3 SINE B2 1 206 -10 9 851 543 242 31 62 chr4 34983106 34983300 -120646820 - B3A SINE B2 -2 196 9 9 851 756 173 30 0 chr4 34983949 34984082 -120646038 - B1_Mur4 SINE Alu -13 137 1 9 851 306 98 0 0 chr4 34984843 34984894 -120645226 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 851 1123 223 96 28 chr4 34985700 34985982 -120644138 - MTEb LTR MaLR 0 379 79 9 851 1289 192 105 77 chr4 34986165 34986555 -120643565 + RMER15 LTR ERVL 47 447 -128 9 851 235 308 56 48 chr4 34987174 34987300 -120642820 - MER5A1 DNA MER1_type -4 162 36 9 851 253 429 30 12 chr4 34987550 34987715 -120642405 + MamGypLTR1a LTR Gypsy 356 523 -261 9 851 449 277 36 0 chr4 34988060 34988197 -120641923 + B1F SINE Alu 1 142 -7 9 851 557 258 125 45 chr4 34988206 34988470 -120641650 + B4A SINE B4 3 287 -5 9 851 1477 69 11 0 chr4 34988659 34988848 -120641272 + B2_Mm1t SINE B2 1 191 -2 1 851 36122 35 0 0 chr4 34989870 34995085 -120635035 + L1Md_T LINE L1 278 5589 -297 1 851 9177 5 0 0 chr4 34995085 34996081 -120634039 + L1Md_T LINE L1 5590 6585 0 1 851 306 0 0 0 chr4 34996141 34996175 -120633945 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 852 27 0 0 0 chr4 34996692 34996719 -120633401 + AT_rich Low_complexity Low_complexity 1 27 0 1 852 197 65 32 0 chr4 34997930 34997961 -120632159 + (TTCTCC)n Simple_repeat Simple_repeat 6 37 0 1 852 520 292 31 38 chr4 34998145 34998305 -120631815 - RSINE1 SINE B4 -4 161 3 1 852 436 270 133 56 chr4 34999130 34999326 -120630794 + B4A SINE B4 82 292 0 1 852 334 64 0 0 chr4 34999340 34999387 -120630733 + HAL1-3A_ME LINE L1 1977 2023 -835 1 852 754 252 197 61 chr4 35000292 35000749 -120629371 - Lx9 LINE L1 -20 7624 7106 1 852 341 292 44 67 chr4 35001266 35001446 -120628674 + MER34A LTR ERV1 1 176 -395 2 852 217 355 65 27 chr4 35001859 35002044 -120628076 + L2b LINE L2 2921 3112 -263 3 852 217 179 18 18 chr4 35002081 35002138 -120627982 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 852 1110 137 49 6 chr4 35002678 35002861 -120627259 + B2_Mm2 SINE B2 2 192 -3 5 852 694 167 39 16 chr4 35002862 35002990 -120627130 - B1_Mur3 SINE Alu -17 132 2 6 852 852 206 61 15 chr4 35003028 35003225 -120626895 - B3 SINE B2 -8 208 3 7 852 861 239 58 70 chr4 35003226 35003469 -120626651 - B4A SINE B4 -48 244 5 8 852 23 33 0 0 chr4 35003479 35003509 -120626611 + AT_rich Low_complexity Low_complexity 1 30 0 9 852 285 225 42 14 chr4 35003605 35003677 -120626443 + ID4 SINE ID 1 74 -9 1 852 471 288 23 46 chr4 35003717 35003848 -120626272 + B1F SINE Alu 1 128 -21 1 852 678 294 51 14 chr4 35003973 35004121 -120625999 + ID_B1 SINE B4 2 159 -65 1 852 1808 204 22 11 chr4 35004121 35004488 -120625632 - ORR1D1 LTR MaLR -3 371 1 1 852 678 294 51 14 chr4 35004488 35004553 -120625567 + ID_B1 SINE B4 160 223 -1 1 852 348 24 0 0 chr4 35004570 35004611 -120625509 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 852 240 378 60 30 chr4 35004709 35004941 -120625179 - L2 LINE L2 -411 3008 2770 1 852 638 207 53 7 chr4 35006863 35007006 -120623114 + B1F SINE Alu 1 149 0 1 852 348 127 0 0 chr4 35007022 35007077 -120623043 + (CAGC)n Simple_repeat Simple_repeat 4 58 0 1 852 933 72 0 0 chr4 35007090 35007229 -120622891 + (TCCA)n Simple_repeat Simple_repeat 1 139 0 1 852 189 0 0 0 chr4 35008144 35008165 -120621955 + (A)n Simple_repeat Simple_repeat 1 21 0 1 852 274 200 0 0 chr4 35008333 35008385 -120621735 + MT2A LTR ERVL 488 584 0 2 852 187 261 115 42 chr4 35008402 35008498 -120621622 - MIR SINE MIR -67 195 93 2 852 585 296 49 6 chr4 35008504 35008667 -120621453 - MER5A DNA MER1_type -1 188 19 2 852 186 43 0 0 chr4 35009798 35009821 -120620299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 852 225 324 126 0 chr4 35009854 35009965 -120620155 + MIRb SINE MIR 31 155 -113 2 852 921 181 0 0 chr4 35009965 35010142 -120619978 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 852 408 308 62 20 chr4 35011322 35011468 -120618652 + RSINE1 SINE B4 14 165 0 2 852 258 56 0 0 chr4 35013010 35013046 -120617074 + (T)n Simple_repeat Simple_repeat 1 36 0 2 852 339 259 28 33 chr4 35013946 35014126 -120615994 + RMER17C LTR ERVK 97 275 -135 2 852 245 227 45 0 chr4 35014285 35014351 -120615769 + G-rich Low_complexity Low_complexity 3 71 0 2 852 258 312 158 16 chr4 35014371 35014546 -120615574 - MIRb SINE MIR -18 244 44 3 852 538 248 68 0 chr4 35014785 35014918 -120615202 + B1F SINE Alu 8 149 0 3 852 268 254 127 0 chr4 35014918 35014989 -120615131 + ID2 SINE ID 3 82 -1 3 852 21 0 0 0 chr4 35015346 35015367 -120614753 + AT_rich Low_complexity Low_complexity 1 21 0 3 852 303 227 15 0 chr4 35016769 35016835 -120613285 + B4 SINE B4 19 85 -207 3 852 745 235 16 139 chr4 35016846 35017098 -120613022 + B4 SINE B4 72 292 0 3 852 216 0 0 0 chr4 35017098 35017122 -120612998 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 852 1242 48 0 0 chr4 35017258 35017404 -120612716 - B1_Mus1 SINE Alu 0 148 3 3 852 4535 12 0 0 chr4 35017431 35017924 -120612196 + MT2_Mm LTR ERVL 1 493 0 3 852 9517 27 3 2 chr4 35017926 35019023 -120611097 + MTA_Mm-int LTR MaLR 1 1098 0 3 852 3434 33 3 0 chr4 35019023 35019415 -120610705 + MTA_Mm LTR MaLR 1 393 -3 3 852 45499 15 7 0 chr4 35019415 35024420 -120605700 + MERVL-int LTR ERVL 320 5360 -125 3 852 384 179 46 35 chr4 35024420 35024507 -120605613 + ORR1A3-int LTR MaLR 553 640 -1323 4 852 319 0 0 0 chr4 35024507 35024545 -120605575 + MERVL-int LTR ERVL 5448 5485 0 3 852 4535 12 0 0 chr4 35024545 35025038 -120605082 + MT2_Mm LTR ERVL 1 493 0 3 852 369 43 0 0 chr4 35025136 35025183 -120604937 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 852 23 33 0 0 chr4 35025329 35025359 -120604761 + AT_rich Low_complexity Low_complexity 1 30 0 4 852 2355 170 52 2 chr4 35025562 35025963 -120604157 - MTC LTR MaLR 0 421 1 4 852 3313 216 68 111 chr4 35025964 35027100 -120603020 - MTC-int LTR MaLR -9 1089 3 4 852 2112 171 73 13 chr4 35027104 35027501 -120602619 - MTC LTR MaLR 0 421 1 4 852 238 184 20 0 chr4 35027504 35027553 -120602567 + L1P5 LINE L1 5342 5391 -765 4 852 405 198 44 0 chr4 35027578 35027669 -120602451 + L1MA9 LINE L1 5734 5828 -484 4 852 950 206 28 19 chr4 35027670 35027883 -120602237 + B3 SINE B2 1 215 -1 4 852 433 305 60 15 chr4 35027901 35028034 -120602086 + B1F SINE Alu 1 139 -10 4 852 390 246 149 0 chr4 35028062 35028196 -120601924 + L1MA9 LINE L1 5840 5993 -298 4 852 280 242 0 16 chr4 35028233 35028296 -120601824 - BC1_Mm scRNA scRNA -77 75 14 4 852 481 167 175 0 chr4 35028409 35028535 -120601585 + B1_Mur2 SINE Alu 1 148 -1 4 852 1605 26 5 25 chr4 35028565 35028762 -120601358 - B2_Mm1t SINE B2 0 193 1 5 852 366 280 39 71 chr4 35028833 35028958 -120601162 + RSINE1 SINE B4 15 136 -29 5 852 1281 56 0 0 chr4 35028958 35029137 -120600983 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 852 366 280 39 71 chr4 35029137 35029165 -120600955 + RSINE1 SINE B4 137 163 -2 5 852 195 257 92 26 chr4 35030183 35030259 -120599861 - L2b LINE L2 -4 3371 3291 5 852 274 294 0 32 chr4 35032156 35032251 -120597869 + GA-rich Low_complexity Low_complexity 2 93 0 5 852 399 284 48 91 chr4 35032575 35032784 -120597336 + MER3 DNA MER1_type 5 204 -5 5 852 267 288 37 12 chr4 35033827 35033908 -120596212 + ID4 SINE ID 1 83 0 5 852 182 208 21 0 chr4 35033913 35033961 -120596159 + GA-rich Low_complexity Low_complexity 1 49 0 5 852 249 347 0 20 chr4 35034578 35034678 -120595442 + B4A SINE B4 1 98 -194 5 852 195 370 98 12 chr4 35034830 35034912 -120595208 - MIRc SINE MIR -135 133 45 5 852 401 259 0 0 chr4 35035506 35035587 -120594533 + ID4_ SINE ID 3 83 0 6 852 242 56 0 27 chr4 35037600 35037637 -120592483 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 852 380 322 137 0 chr4 35037640 35037786 -120592334 - B4A SINE B4 -2 290 125 6 852 1181 178 118 160 chr4 35037818 35038200 -120591920 - ORR1D1 LTR MaLR -8 366 1 6 852 376 189 13 26 chr4 35038202 35038278 -120591842 - B4A SINE B4 -215 77 3 6 852 614 190 76 96 chr4 35039253 35039266 -120590854 - B2_Mm2 SINE B2 -1 194 182 6 852 570 167 43 9 chr4 35039266 35039381 -120590739 - PB1D9 SINE Alu 0 120 2 6 852 614 190 76 96 chr4 35039381 35039565 -120590555 - B2_Mm2 SINE B2 -14 181 1 6 852 277 306 71 49 chr4 35040688 35040716 -120589404 + ID_B1 SINE B4 77 187 -105 6 852 523 214 63 0 chr4 35040716 35040839 -120589281 + B1_Mur1 SINE Alu 18 147 -2 6 852 1188 75 0 0 chr4 35040884 35041031 -120589089 + B1_Mm SINE Alu 1 147 0 6 852 575 298 31 26 chr4 35041631 35041824 -120588296 + B3A SINE B2 1 194 -4 7 852 229 355 92 31 chr4 35042750 35042945 -120587175 + LTR79 LTR ERVL 79 285 -242 7 852 458 269 170 62 chr4 35042999 35043193 -120586927 - MTD LTR MaLR -188 231 17 7 852 278 257 8 110 chr4 35043202 35043320 -120586800 + MT2B2 LTR ERVL 157 262 -322 7 852 566 171 0 15 chr4 35043215 35043341 -120586779 + PB1D10 SINE Alu 5 117 0 7 852 627 315 35 39 chr4 35044451 35044735 -120585385 + B4A SINE B4 3 285 -7 7 852 665 168 16 30 chr4 35044758 35045063 -120585057 + (CATA)n Simple_repeat Simple_repeat 1 301 0 7 852 295 305 109 58 chr4 35045294 35045468 -120584652 - MIR3 SINE MIR -13 195 13 7 852 259 324 129 7 chr4 35046764 35046904 -120583216 + MIR SINE MIR 33 189 -73 7 852 212 200 18 0 chr4 35047948 35048003 -120582117 + CT-rich Low_complexity Low_complexity 5 60 0 7 852 642 220 0 15 chr4 35048022 35048156 -120581964 - B1_Mur1 SINE Alu -16 133 2 8 852 216 0 0 0 chr4 35048188 35048212 -120581908 + (A)n Simple_repeat Simple_repeat 1 24 0 8 852 684 0 0 0 chr4 35048899 35048975 -120581145 + (TTCTC)n Simple_repeat Simple_repeat 1 76 0 8 852 279 133 0 0 chr4 35048983 35049028 -120581092 + (TCC)n Simple_repeat Simple_repeat 2 46 0 8 852 568 248 21 126 chr4 35049042 35049185 -120580935 - B1_Mur1 SINE Alu -20 129 2 8 852 28 0 0 0 chr4 35049305 35049333 -120580787 + AT_rich Low_complexity Low_complexity 1 28 0 8 852 519 231 8 49 chr4 35049844 35049967 -120580153 - ID_B1 SINE B4 -20 204 87 8 852 1171 245 15 18 chr4 35050021 35050295 -120579825 - B4A SINE B4 -13 279 7 8 852 739 308 169 57 chr4 35050347 35050839 -120579281 + MLT1F2 LTR MaLR 6 552 -8 8 852 1464 59 16 21 chr4 35051163 35051354 -120578766 + B2_Mm2 SINE B2 2 191 -4 8 852 545 320 98 57 chr4 35051544 35051823 -120578297 + L2 LINE L2 2743 3035 -384 9 852 957 274 155 10 chr4 35051823 35052229 -120577891 - MLT1C LTR MaLR -2 465 1 9 852 545 320 98 57 chr4 35052229 35052264 -120577856 + L2 LINE L2 3036 3070 -349 9 852 585 324 69 31 chr4 35052276 35052566 -120577554 + LTR16B2 LTR ERVL 17 317 -145 9 852 312 336 19 9 chr4 35052607 35052715 -120577405 + MER45A DNA Tip100 48 156 -22 9 852 295 206 16 0 chr4 35052755 35052818 -120577302 + MTEa LTR MaLR 310 373 -6 9 852 283 292 142 0 chr4 35054062 35054168 -120575952 - RSINE1 SINE B4 -29 136 16 9 852 528 247 115 70 chr4 35054190 35054217 -120575903 + L1MEd LINE L1 904 930 -5189 9 852 512 275 14 7 chr4 35054217 35054356 -120575764 + B1F SINE Alu 1 140 -9 9 852 528 247 115 70 chr4 35054356 35054615 -120575505 + L1MEd LINE L1 931 1203 -4916 9 852 940 87 13 0 chr4 35054634 35054783 -120575337 + (TCC)n Simple_repeat Simple_repeat 3 153 0 9 852 1085 83 0 0 chr4 35054820 35054953 -120575167 + B1_Mus1 SINE Alu 1 133 -15 9 852 322 304 107 56 chr4 35055055 35055086 -120575034 - B2_Mm2 SINE B2 -8 187 144 1 852 390 21 0 0 chr4 35055086 35055133 -120574987 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 852 459 304 107 56 chr4 35055133 35055279 -120574841 - B3A SINE B2 -52 143 1 1 852 432 0 0 0 chr4 35055333 35055381 -120574739 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 852 212 224 41 0 chr4 35056231 35056280 -120573840 + RSINE1 SINE B4 2 52 -113 1 852 230 212 73 24 chr4 35057526 35057608 -120572512 - Lx7 LINE L1 0 7696 7611 1 852 495 0 0 0 chr4 35057708 35057763 -120572357 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 852 315 0 0 0 chr4 35057763 35057797 -120572323 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 852 2413 252 54 12 chr4 35057800 35058471 -120571649 - Lx7 LINE L1 -361 7335 6637 1 852 233 299 0 0 chr4 35058471 35058538 -120571582 + Lx7 LINE L1 6369 6435 -1261 1 852 530 209 0 9 chr4 35058540 35058646 -120571474 + PB1D9 SINE Alu 8 112 -8 1 852 234 0 0 0 chr4 35058651 35058677 -120571443 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 852 635 254 50 64 chr4 35058709 35058911 -120571209 + Lx7 LINE L1 6431 6629 -1067 1 852 524 212 9 26 chr4 35059006 35059122 -120570998 - RSINE1 SINE B4 -15 150 37 1 852 436 258 141 57 chr4 35059195 35059331 -120570789 + ORSL-2b DNA Tip100 108 269 -239 1 852 552 30 0 0 chr4 35059331 35059397 -120570723 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 1 852 436 258 141 57 chr4 35059397 35059593 -120570527 + ORSL-2b DNA Tip100 270 468 -40 1 852 1179 47 0 0 chr4 35060308 35060458 -120569662 + (CA)n Simple_repeat Simple_repeat 2 151 0 1 852 271 351 95 0 chr4 35061171 35061319 -120568801 - MIR SINE MIR -64 198 37 1 852 494 172 10 0 chr4 35061968 35062067 -120568053 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 852 233 202 86 25 chr4 35062958 35063039 -120567081 + LTR50 LTR ERVL 17 102 -693 1 852 286 297 34 34 chr4 35063770 35063815 -120566305 + PB1D10 SINE Alu 2 46 -81 1 852 3076 75 0 0 chr4 35063815 35064202 -120565918 + L1_Mus1 LINE L1 6175 6561 -6 1 852 981 0 0 0 chr4 35064202 35064311 -120565809 + (GAA)n Simple_repeat Simple_repeat 1 109 0 1 852 286 289 0 38 chr4 35064311 35064356 -120565764 + PB1D10 SINE Alu 46 89 -28 1 852 198 0 0 0 chr4 35064365 35064387 -120565733 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1 852 422 36 18 0 chr4 35064470 35064526 -120565594 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 852 1537 188 96 9 chr4 35065658 35066002 -120564118 - MTD LTR MaLR -45 374 1 1 852 809 222 0 159 chr4 35066875 35067127 -120562993 + B3 SINE B2 3 214 -2 1 852 191 30 0 108 chr4 35068053 35068074 -120562046 + (T)n Simple_repeat Simple_repeat 1 21 0 1 852 1119 68 7 7 chr4 35068074 35068221 -120561899 - B1_Mm SINE Alu 0 147 1 1 852 191 30 0 108 chr4 35068221 35068236 -120561884 + (T)n Simple_repeat Simple_repeat 1 12 0 1 852 363 326 80 20 chr4 35068325 35068575 -120561545 + Charlie13b DNA Charlie 45 309 -203 1 852 188 367 84 30 chr4 35068631 35068833 -120561287 + MIRb SINE MIR 6 218 -50 1 852 189 0 0 0 chr4 35069158 35069179 -120560941 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 852 802 246 0 47 chr4 35069218 35069431 -120560689 - B3 SINE B2 0 216 14 1 852 1138 157 17 25 chr4 35069794 35070029 -120560091 + Lx4B LINE L1 6822 7054 -4 1 852 879 85 78 0 chr4 35070042 35070171 -120559949 + B1_Mus1 SINE Alu 1 139 -9 1 852 537 58 0 0 chr4 35070171 35070240 -120559880 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 852 651 197 70 8 chr4 35070574 35070702 -120559418 + B1F2 SINE Alu 1 136 -13 1 852 180 152 0 0 chr4 35070837 35070870 -120559250 + C-rich Low_complexity Low_complexity 1 33 0 1 852 374 108 15 0 chr4 35073555 35073620 -120556500 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 852 544 303 76 18 chr4 35073651 35073876 -120556244 - B4A SINE B4 -51 241 4 1 852 25 0 0 0 chr4 35074605 35074630 -120555490 + AT_rich Low_complexity Low_complexity 1 25 0 1 852 384 247 0 12 chr4 35075608 35075690 -120554430 - B3A SINE B2 -117 81 1 1 852 252 270 146 0 chr4 35076345 35076434 -120553686 + Tigger6b DNA MER2_type 100 201 -1396 1 852 567 214 18 18 chr4 35076456 35076570 -120553550 + Lx7 LINE L1 6462 6575 -1121 1 852 250 231 0 0 chr4 35076574 35076626 -120553494 + Tigger6b DNA MER2_type 197 248 -1349 1 852 288 0 0 0 chr4 35078009 35078041 -120552079 + (A)n Simple_repeat Simple_repeat 1 32 0 1 852 387 0 0 0 chr4 35078369 35078412 -120551708 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 852 324 217 29 21 chr4 35078650 35078776 -120551344 - MIRc SINE MIR -130 138 10 1 852 215 184 0 0 chr4 35078834 35078872 -120551248 - B1_Mus2 SINE Alu -109 38 1 1 852 1805 191 16 6 chr4 35079264 35079627 -120550493 + ORR1D1 LTR MaLR 1 367 -7 1 852 1380 66 44 0 chr4 35079628 35079810 -120550310 + B2_Mm2 SINE B2 3 192 -3 1 852 417 279 86 21 chr4 35079847 35080034 -120550086 + Lx8 LINE L1 7258 7456 -17 1 852 262 143 200 31 chr4 35080085 35080150 -120549970 + B3 SINE B2 137 212 -4 1 852 247 328 0 0 chr4 35080238 35080299 -120549821 + RMER1B Other Other 35 95 -971 1 852 3937 168 83 84 chr4 35080304 35081299 -120548821 + RMER1B Other Other 73 1066 0 1 852 466 270 142 0 chr4 35081463 35081611 -120548509 + RCHARR1 DNA MER1_type 67 235 -739 1 852 1055 263 205 28 chr4 35081630 35082213 -120547907 + RCHARR1 DNA MER1_type 286 970 -4 1 852 503 227 0 0 chr4 35082947 35083044 -120547076 + B1_Mur4 SINE Alu 41 137 -13 1 852 216 0 0 0 chr4 35083048 35083072 -120547048 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 852 1275 181 80 26 chr4 35083083 35083394 -120546726 - ORR1D-int LTR MaLR -275 1095 768 1 852 2670 201 71 5 chr4 35083414 35084005 -120546115 - ORR1D-int LTR MaLR -732 638 9 1 852 385 333 50 29 chr4 35084153 35084434 -120545686 + L1M2 LINE L1 5078 5364 -779 1 852 404 267 30 0 chr4 35084537 35084638 -120545482 + B3A SINE B2 1 104 -94 1 852 604 257 125 40 chr4 35084773 35085056 -120545064 + Lx8 LINE L1 5492 5803 -44 1 852 198 0 0 0 chr4 35085056 35085078 -120545042 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 852 604 331 94 52 chr4 35085078 35085268 -120544852 + Lx8 LINE L1 5804 6021 -1452 1 852 183 184 0 0 chr4 35085397 35085435 -120544685 + GA-rich Low_complexity Low_complexity 4 41 0 1 852 240 35 0 0 chr4 35085741 35085770 -120544350 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 1 852 180 0 0 0 chr4 35085875 35085895 -120544225 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 852 1023 62 31 0 chr4 35085895 35086025 -120544095 - B1_Mus1 SINE Alu -13 135 2 1 852 6113 55 0 0 chr4 35086050 35086800 -120543320 - L1Md_F2 LINE L1 0 6582 5833 1 852 525 129 13 0 chr4 35086800 35086895 -120543225 - MTC LTR MaLR -310 97 1 1 852 428 51 17 0 chr4 35086994 35087053 -120543067 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 852 865 238 28 14 chr4 35088106 35088319 -120541801 - B3 SINE B2 0 216 1 1 852 29 0 0 0 chr4 35088652 35088681 -120541439 + AT_rich Low_complexity Low_complexity 1 29 0 1 852 1212 54 0 0 chr4 35088681 35088828 -120541292 - B1_Mus2 SINE Alu 0 147 1 1 852 816 202 22 98 chr4 35088849 35089034 -120541086 - B3 SINE B2 -7 209 41 1 852 1247 74 0 0 chr4 35089034 35089197 -120540923 - L1Md_T LINE L1 0 6582 6420 1 852 816 202 22 98 chr4 35089197 35089236 -120540884 - B3 SINE B2 -176 40 2 1 852 292 341 80 45 chr4 35091253 35091542 -120538578 + L4 LINE RTE 1647 1945 -84 1 852 813 168 196 27 chr4 35091557 35091741 -120538379 - B3 SINE B2 -1 215 1 1 852 238 394 0 0 chr4 35091784 35091883 -120538237 + MIRb SINE MIR 91 189 -79 1 852 341 230 14 0 chr4 35091900 35091974 -120538146 + ID4 SINE ID 2 76 -7 1 852 205 246 12 46 chr4 35092823 35092916 -120537204 + MIR SINE MIR 40 128 -140 1 852 255 279 0 0 chr4 35094113 35094174 -120535946 - MIRm SINE MIR 0 276 216 1 852 282 352 54 48 chr4 35094175 35094342 -120535778 - MamRep4096 DNA hAT? -2 424 257 1 852 1140 70 0 14 chr4 35095093 35095239 -120534881 - B1_Mus1 SINE Alu -1 147 4 1 852 243 211 66 104 chr4 35095797 35095903 -120534217 - MER53 DNA hAT -3 190 89 1 852 1365 79 6 0 chr4 35097026 35097203 -120532917 + B2_Mm1t SINE B2 2 179 -14 1 852 386 94 288 18 chr4 35097230 35097344 -120532776 + B2_Mm2 SINE B2 46 195 0 1 852 485 126 23 0 chr4 35098545 35098632 -120531488 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 1 852 1046 56 0 63 chr4 35098632 35098823 -120531297 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 852 300 53 0 0 chr4 35100493 35100531 -120529589 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 1 852 295 250 0 29 chr4 35100643 35100713 -120529407 + ID4 SINE ID 3 70 -13 1 852 198 71 0 0 chr4 35101515 35101543 -120528577 + (CCCTG)n Simple_repeat Simple_repeat 1 28 0 1 852 250 304 14 0 chr4 35101584 35101653 -120528467 + tRNA-Ala-GCA tRNA tRNA 1 70 -5 1 852 528 240 157 17 chr4 35104922 35105100 -120525020 + MTD LTR MaLR 1 203 -216 1 852 958 177 65 12 chr4 35105197 35105410 -120524710 + MTD LTR MaLR 151 413 -6 1 852 263 277 114 42 chr4 35105887 35106101 -120524019 + L2a LINE L2 3014 3249 -177 1 852 225 0 0 0 chr4 35106104 35106129 -120523991 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 852 717 229 46 55 chr4 35106218 35106435 -120523685 + B3 SINE B2 2 216 0 1 852 264 274 107 33 chr4 35106456 35106577 -120523543 - MLT1E1 LTR MaLR -407 247 118 1 852 224 234 0 0 chr4 35106653 35106700 -120523420 + L2a LINE L2 3319 3365 -61 1 852 533 251 105 117 chr4 35106728 35107120 -120523000 + MLT1B LTR MaLR 4 390 0 1 852 233 263 13 38 chr4 35107208 35107287 -120522833 - MIRb SINE MIR -35 233 157 1 852 1161 68 7 0 chr4 35107474 35107620 -120522500 + B1_Mus1 SINE Alu 1 147 -1 1 852 1012 221 68 60 chr4 35107861 35108322 -120521798 - RLTR20A2 LTR ERVK 0 551 1 1 852 683 276 85 20 chr4 35108546 35108746 -120521374 - B3 SINE B2 -3 213 1 1 852 1341 208 105 7 chr4 35108883 35109240 -120520880 + MTD LTR MaLR 13 401 -18 2 852 232 269 121 9 chr4 35109646 35109762 -120520358 + MIRb SINE MIR 120 248 -20 2 852 185 236 182 0 chr4 35112387 35112442 -120517678 - MIR SINE MIR -123 85 21 2 852 261 306 0 0 chr4 35113044 35113104 -120517016 + PB1 SINE Alu 51 110 -17 2 852 434 322 146 16 chr4 35113104 35113420 -120516700 + ORR1E LTR MaLR 1 357 -2 2 852 543 248 25 0 chr4 35113472 35113593 -120516527 + B3A SINE B2 1 124 -74 2 852 1695 26 0 0 chr4 35113757 35113950 -120516170 + B2_Mm1a SINE B2 1 193 0 2 852 216 189 325 94 chr4 35114113 35114136 -120515984 - B2_Mm1t SINE B2 -2 191 172 2 852 1267 41 0 0 chr4 35114136 35114283 -120515837 + B1_Mm SINE Alu 1 147 0 2 852 315 185 134 39 chr4 35114283 35114377 -120515743 - B2_Mm2 SINE B2 -22 171 46 2 852 1295 86 17 0 chr4 35114389 35114564 -120515556 - B2_Mm1t SINE B2 -14 179 2 2 852 505 280 40 40 chr4 35114611 35114760 -120515360 + RSINE1 SINE B4 3 151 -14 2 852 472 206 11 0 chr4 35114893 35114985 -120515135 + B3 SINE B2 1 93 -123 2 852 1165 75 0 0 chr4 35114997 35115143 -120514977 - B1_Mm SINE Alu 0 147 2 2 852 1415 206 147 0 chr4 35115436 35115791 -120514329 - MTD LTR MaLR -12 407 1 2 852 303 49 0 0 chr4 35115999 35116040 -120514080 + (T)n Simple_repeat Simple_repeat 1 41 0 2 852 1087 76 14 0 chr4 35116040 35116185 -120513935 - B1_Mus2 SINE Alu 0 147 1 2 852 306 284 87 10 chr4 35116626 35116729 -120513391 - MIRb SINE MIR -6 262 152 2 852 367 270 11 142 chr4 35117744 35117934 -120512186 + MTEb LTR MaLR 1 165 -214 2 852 283 353 78 84 chr4 35117934 35118242 -120511878 + MLT2B2 LTR ERVL 1 495 -20 2 852 783 299 126 72 chr4 35118326 35118812 -120511308 + MLT2B2 LTR ERVL 1 512 -3 2 852 960 180 22 6 chr4 35119104 35119283 -120510837 - ORR1C1 LTR MaLR 0 378 197 2 852 528 16 0 0 chr4 35119289 35119350 -120510770 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 852 2462 134 77 61 chr4 35119350 35119836 -120510284 - Lx LINE L1 -9 6645 6151 2 852 1196 126 0 72 chr4 35119836 35120059 -120510061 - ORR1C1 LTR MaLR -171 207 1 2 852 285 314 0 0 chr4 35121528 35121598 -120508522 - RSINE1 SINE B4 -93 72 3 2 852 826 268 33 0 chr4 35121823 35122036 -120508084 - ID_B1 SINE B4 -3 221 2 2 852 537 261 49 0 chr4 35122103 35122245 -120507875 + B1_Mur1 SINE Alu 1 149 0 2 852 361 226 106 67 chr4 35122978 35123158 -120506962 + RMER17C LTR ERVK 3 189 -221 2 852 1224 62 0 0 chr4 35123167 35123312 -120506808 - B1_Mus1 SINE Alu -3 145 1 2 852 602 236 69 96 chr4 35123322 35123346 -120506774 + RMER17C LTR ERVK 98 121 -289 2 852 1647 31 5 0 chr4 35123346 35123538 -120506582 - B2_Mm1t SINE B2 0 193 1 2 852 602 236 69 96 chr4 35123538 35123635 -120506485 + RMER17C LTR ERVK 122 217 -193 2 852 1248 68 0 0 chr4 35123635 35123811 -120506309 + (TCCCC)n Simple_repeat Simple_repeat 2 177 0 2 852 602 236 69 96 chr4 35123811 35123979 -120506141 + RMER17C LTR ERVK 218 379 -31 2 852 219 103 0 0 chr4 35123989 35124028 -120506092 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2 852 390 300 60 76 chr4 35124031 35124319 -120505801 + B4 SINE B4 19 274 -18 2 852 345 129 0 0 chr4 35124323 35124393 -120505727 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 852 367 149 23 11 chr4 35124410 35124498 -120505622 + GA-rich Low_complexity Low_complexity 3 91 0 2 852 1274 251 69 57 chr4 35124670 35125315 -120504805 + RLTR18B LTR ERVK 1 612 -4 2 852 343 320 101 34 chr4 35127031 35127057 -120503063 - B2_Mm2 SINE B2 -5 190 163 2 852 306 0 0 0 chr4 35127057 35127091 -120503029 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 852 567 273 69 1 chr4 35127091 35127242 -120502878 - B3A SINE B2 -33 162 1 2 853 1945 127 70 9 chr4 35127338 35127680 -120502440 + ORR1B1 LTR MaLR 1 363 -31 2 853 7139 56 0 25 chr4 35127680 35128322 -120501798 + L1Md_T LINE L1 233 857 -5665 2 853 4501 14 0 0 chr4 35128322 35128815 -120501305 - MT2_Mm LTR ERVL 0 493 1 2 853 36094 42 2 2 chr4 35128815 35133446 -120496674 + L1Md_T LINE L1 858 5589 -297 2 853 8607 33 0 0 chr4 35133446 35134442 -120495678 + L1Md_T LINE L1 5590 6585 0 2 853 296 211 14 0 chr4 35134471 35134557 -120495563 - L1M4 LINE L1 -3359 2787 2697 2 853 1003 179 97 32 chr4 35134610 35134858 -120495262 - MTD-int LTR MaLR -975 283 20 2 853 1764 181 72 37 chr4 35134877 35135278 -120494842 - MTD LTR MaLR 0 419 5 2 853 1881 198 58 46 chr4 35135415 35135897 -120494223 + RLTR18 LTR ERVK 24 511 -105 2 853 252 238 0 31 chr4 35136130 35136195 -120493925 + L1MA4 LINE L1 5546 5608 -704 2 853 705 293 62 8 chr4 35136200 35136458 -120493662 + B4A SINE B4 3 274 -18 2 853 564 15 0 0 chr4 35136512 35136577 -120493543 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 853 782 235 78 86 chr4 35136577 35136980 -120493140 + L1MA4 LINE L1 5604 6023 -277 2 853 418 318 52 0 chr4 35137777 35137931 -120492189 - RSINE1 SINE B4 -2 163 2 2 853 305 298 61 61 chr4 35138032 35138164 -120491956 - ID_B1 SINE B4 0 224 93 2 853 228 67 0 0 chr4 35138184 35138214 -120491906 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2 853 350 224 76 95 chr4 35138266 35138279 -120491841 + B4 SINE B4 81 152 -140 2 853 888 53 38 15 chr4 35138279 35138412 -120491708 + B1_Mus1 SINE Alu 11 146 -2 2 853 350 224 76 95 chr4 35138412 35138424 -120491696 + B4 SINE B4 153 235 -57 2 853 656 184 26 66 chr4 35143715 35143866 -120486254 + B1_Mur1 SINE Alu 2 146 -3 2 853 1470 69 11 0 chr4 35143885 35144074 -120486046 + B2_Mm1t SINE B2 1 191 -2 2 853 513 268 12 73 chr4 35145030 35145311 -120484809 + RMER4B LTR ERVK 268 575 -10 2 853 615 130 0 0 chr4 35145728 35145828 -120484292 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 853 216 86 0 0 chr4 35146009 35146044 -120484076 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 853 21 36 0 0 chr4 35146093 35146121 -120483999 + AT_rich Low_complexity Low_complexity 1 28 0 2 853 250 278 0 0 chr4 35146123 35146177 -120483943 + B1F SINE Alu 24 77 -72 2 853 1966 151 118 24 chr4 35146177 35146558 -120483562 + MTC LTR MaLR 5 421 0 2 853 3878 153 55 3 chr4 35146572 35147403 -120482717 + MERVL_2A-int LTR ERVL 4649 5611 -150 2 853 230 200 0 77 chr4 35147403 35147468 -120482652 + ORR1A3-int LTR MaLR 557 616 -1347 2 853 240 226 10 41 chr4 35147470 35147567 -120482553 + ORR1A3-int LTR MaLR 546 639 -1324 2 853 361 107 0 0 chr4 35147567 35147623 -120482497 + MERVL_2A-int LTR ERVL 5706 5761 0 2 853 1356 230 58 164 chr4 35147623 35147951 -120482169 + MT2B LTR ERVL 1 258 -343 2 853 588 29 0 0 chr4 35147951 35148021 -120482099 + (CAAAC)n Simple_repeat Simple_repeat 2 71 0 2 853 1356 230 58 164 chr4 35148021 35148364 -120481756 + MT2B LTR ERVL 259 600 -1 2 853 506 252 69 0 chr4 35148377 35148536 -120481584 - L1MA5 LINE L1 -10 6290 6121 2 853 375 242 95 205 chr4 35148546 35148873 -120481247 + B4A SINE B4 2 292 0 2 853 638 277 206 30 chr4 35148878 35149282 -120480838 - L1MA5 LINE L1 -175 6125 5652 2 853 198 103 0 0 chr4 35149282 35149311 -120480809 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 2 853 475 246 148 38 chr4 35150362 35150599 -120479521 - L1MA5 LINE L1 -579 5610 5348 2 853 534 292 75 70 chr4 35150623 35151009 -120479111 - L1MA5 LINE L1 -886 5257 4870 2 853 313 221 13 13 chr4 35151040 35151118 -120479002 - L1MA5 LINE L1 -1403 4740 4663 2 853 330 339 62 62 chr4 35151131 35151452 -120478668 - ORR1E LTR MaLR -13 346 26 2 853 1247 41 0 0 chr4 35151522 35151669 -120478451 + B1_Mus2 SINE Alu 1 147 0 2 853 453 314 156 22 chr4 35151719 35152034 -120478086 - L1MA5 LINE L1 -1562 4581 4221 2 853 1296 136 149 35 chr4 35152034 35152323 -120477797 + RLTRETN_Mm LTR ERVK 1 322 0 2 853 453 317 143 23 chr4 35152323 35152529 -120477591 - L1MA5 LINE L1 -1923 4220 3965 2 853 240 111 0 0 chr4 35154102 35154138 -120475982 + (A)n Simple_repeat Simple_repeat 1 36 0 2 853 23648 66 5 1 chr4 35154268 35157317 -120472803 + L1Md_F2 LINE L1 2525 5586 -297 2 853 8097 53 4 9 chr4 35157317 35158315 -120471805 + L1Md_F2 LINE L1 5587 6579 -3 2 853 511 246 147 37 chr4 35158786 35158976 -120471144 + B3 SINE B2 1 211 -5 2 853 2689 76 73 11 chr4 35159221 35159593 -120470527 + MTA_Mm LTR MaLR 2 396 0 2 853 335 354 135 0 chr4 35159671 35159863 -120470257 - MIR SINE MIR -41 221 4 2 853 460 179 10 40 chr4 35160647 35160775 -120469345 + B3 SINE B2 5 123 -75 2 853 3262 45 10 0 chr4 35161230 35161626 -120468494 + MTB LTR MaLR 1 400 0 2 853 221 319 0 100 chr4 35162047 35162127 -120467993 + ID4 SINE ID 2 73 -10 2 853 1460 45 11 6 chr4 35162249 35162428 -120467692 - B2_Mm2 SINE B2 -14 181 2 2 853 254 0 0 0 chr4 35162789 35162823 -120467297 - ORR1A4 LTR MaLR -295 34 1 2 853 219 69 0 0 chr4 35163096 35163125 -120466995 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 853 1914 230 59 45 chr4 35163569 35164166 -120465954 + Lx7 LINE L1 7092 7696 0 2 853 21 0 0 0 chr4 35164259 35164280 -120465840 + AT_rich Low_complexity Low_complexity 1 21 0 2 853 284 293 33 56 chr4 35164848 35164971 -120465149 - B1F1 SINE Alu -1 116 1 2 853 283 290 120 83 chr4 35166391 35166775 -120463345 + MLT1C LTR MaLR 66 463 -4 2 853 200 59 29 0 chr4 35166777 35166811 -120463309 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 853 192 125 0 0 chr4 35167486 35167518 -120462602 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 853 560 257 104 50 chr4 35168230 35168451 -120461669 - Tigger7 DNA MER2_type -101 2390 2158 2 853 2486 172 77 10 chr4 35168489 35168971 -120461149 + RLTR11A LTR ERVK 1 514 -14 2 853 1129 266 93 56 chr4 35168984 35169434 -120460686 - Tigger7 DNA MER2_type -387 2104 1638 2 853 285 285 88 68 chr4 35169401 35169548 -120460572 - Tigger7 DNA MER2_type -1639 852 703 2 853 388 207 27 0 chr4 35169641 35169663 -120460457 - B3A SINE B2 -25 191 1 2 853 281 182 187 33 chr4 35169663 35169754 -120460366 - B4A SINE B4 -187 105 1 2 853 1564 278 100 46 chr4 35169766 35170363 -120459757 - Tigger7 DNA MER2_type -1795 696 60 2 853 240 111 0 0 chr4 35170783 35170819 -120459301 + (A)n Simple_repeat Simple_repeat 1 36 0 2 853 739 308 90 110 chr4 35171453 35172000 -120458120 + MER44B DNA MER2_type 6 541 -9 2 853 301 207 24 0 chr4 35172052 35172134 -120457986 + CT-rich Low_complexity Low_complexity 1 84 0 2 853 212 237 61 10 chr4 35173075 35173173 -120456947 + (CCCCAG)n Simple_repeat Simple_repeat 1 103 0 2 853 206 222 0 0 chr4 35173667 35173712 -120456408 + L2a LINE L2 3382 3426 0 2 853 342 0 0 0 chr4 35174083 35174121 -120455999 + (T)n Simple_repeat Simple_repeat 1 38 0 2 853 21 36 0 0 chr4 35174748 35174776 -120455344 + AT_rich Low_complexity Low_complexity 1 28 0 2 853 388 194 0 0 chr4 35174788 35174860 -120455260 + ID SINE ID 2 73 -151 2 853 486 302 164 0 chr4 35175317 35175476 -120454644 + ID_B1 SINE B4 2 186 -38 2 853 593 27 13 0 chr4 35175501 35175576 -120454544 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 2 853 317 185 0 8 chr4 35177005 35177125 -120452995 + (CAAA)n Simple_repeat Simple_repeat 2 120 0 3 853 356 222 0 0 chr4 35177716 35177779 -120452341 - PB1D7 SINE Alu -15 105 43 3 853 832 196 0 39 chr4 35178115 35178269 -120451851 - B1_Mur3 SINE Alu -1 148 1 3 853 270 345 201 10 chr4 35178478 35178677 -120451443 + MIRb SINE MIR 5 241 -27 3 853 360 301 9 9 chr4 35178772 35178886 -120451234 + GA-rich Low_complexity Low_complexity 5 118 0 3 853 495 0 0 0 chr4 35178962 35179017 -120451103 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 853 29 28 0 0 chr4 35179163 35179199 -120450921 + AT_rich Low_complexity Low_complexity 1 36 0 3 853 1575 44 33 0 chr4 35179330 35179513 -120450607 - B2_Mm1t SINE B2 -3 190 2 3 853 12279 144 36 14 chr4 35179800 35181267 -120448853 + Lx5 LINE L1 3692 5204 -673 3 853 3180 55 31 5 chr4 35181267 35181653 -120448467 + MTA_Mm LTR MaLR 1 396 0 3 853 12279 167 26 14 chr4 35181653 35183478 -120446642 + Lx5 LINE L1 5205 7044 -6 3 853 900 181 39 22 chr4 35183814 35183995 -120446125 + B2_Mm2 SINE B2 2 185 -10 3 853 239 279 0 128 chr4 35184283 35184361 -120445759 - B4A SINE B4 -142 150 83 3 853 273 232 71 14 chr4 35184430 35184500 -120445620 + B4A SINE B4 24 97 -195 3 853 1699 181 132 3 chr4 35184504 35184853 -120445267 - ORR1B1 LTR MaLR 0 394 1 3 853 284 248 195 58 chr4 35184872 35185026 -120445094 + B4 SINE B4 116 290 -2 3 853 2427 147 135 75 chr4 35185165 35185530 -120444590 + RMER1B Other Other 493 876 -190 3 853 1113 82 0 46 chr4 35185530 35185683 -120444437 + B1_Mm SINE Alu 2 147 0 3 853 2427 143 139 77 chr4 35185683 35185757 -120444363 + RMER1B Other Other 877 919 -147 3 853 485 44 15 0 chr4 35185757 35185825 -120444295 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 3 853 2427 143 139 77 chr4 35185825 35185927 -120444193 + RMER1B Other Other 920 1057 -9 3 853 847 307 111 15 chr4 35186584 35186845 -120443275 - B4 SINE B4 -2 290 5 3 853 273 276 82 31 chr4 35187962 35188059 -120442061 + MTEb LTR MaLR 278 379 0 3 853 249 303 32 32 chr4 35188503 35188629 -120441491 - L1ME3A LINE L1 -9 6164 6039 3 853 454 324 65 0 chr4 35188630 35188769 -120441351 + RSINE1 SINE B4 11 158 -7 3 853 1824 159 24 82 chr4 35188910 35189286 -120440834 - ORR1B1 LTR MaLR 0 394 41 3 853 2298 166 72 27 chr4 35189955 35190358 -120439762 - MTC LTR MaLR 0 421 1 3 853 606 63 0 0 chr4 35190425 35190504 -120439616 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 3 853 1898 268 20 30 chr4 35190510 35190787 -120439333 - Lx6 LINE L1 -26 7434 7169 3 853 3304 66 13 0 chr4 35190787 35191182 -120438938 + MTB LTR MaLR 1 400 0 3 853 1898 279 18 30 chr4 35191182 35191470 -120438650 - Lx6 LINE L1 -292 7168 6947 3 853 1039 210 107 0 chr4 35191466 35191612 -120438508 + RMER1B Other Other 782 954 -112 3 853 186 43 0 0 chr4 35191612 35191635 -120438485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 853 1039 210 107 0 chr4 35191635 35191740 -120438380 + RMER1B Other Other 955 1059 -7 3 853 858 184 21 11 chr4 35191732 35191919 -120438201 - L1_Mur3 LINE L1 -2455 3425 3237 3 853 6470 65 40 2 chr4 35191930 35192779 -120437341 - L1_Mus2 LINE L1 0 6566 5686 3 853 8282 174 91 25 chr4 35192800 35193745 -120436375 - L1_Mur3 LINE L1 -2646 3231 2244 3 853 2736 62 23 42 chr4 35193745 35194098 -120436022 + ORR1A1 LTR MaLR 1 346 0 3 853 8282 174 91 25 chr4 35194098 35194264 -120435856 - L1_Mur3 LINE L1 -3634 2243 2080 3 853 315 0 0 0 chr4 35194264 35194299 -120435821 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 853 8282 183 72 19 chr4 35194299 35195397 -120434723 - L1_Mur3 LINE L1 -3798 2079 892 3 853 2361 127 3 0 chr4 35195424 35195748 -120434372 - ORR1A3 LTR MaLR 0 326 2 3 853 367 177 0 0 chr4 35196222 35196301 -120433819 - Lx4A LINE L1 0 7058 6980 3 853 419 274 41 24 chr4 35196301 35196442 -120433678 - B1_Mur1 SINE Alu -5 144 2 3 853 180 0 0 0 chr4 35196610 35196630 -120433490 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 3 853 369 0 0 0 chr4 35196632 35196673 -120433447 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 853 303 279 86 47 chr4 35197662 35197790 -120432330 + MIRm SINE MIR 34 166 -110 3 853 706 186 40 8 chr4 35197934 35198059 -120432061 - B1_Mur4 SINE Alu -13 137 9 3 853 1320 267 40 3 chr4 35199850 35200154 -120429966 - Lx6 LINE L1 -177 7283 6969 3 853 440 206 103 0 chr4 35200188 35200285 -120429835 - B1_Mm SINE Alu -39 108 2 3 853 223 277 0 0 chr4 35200286 35200333 -120429787 - B1F1 SINE Alu -101 48 2 3 853 4203 189 83 22 chr4 35200369 35201284 -120428836 + Lx7 LINE L1 5368 6447 -1249 3 853 2565 196 29 158 chr4 35201284 35201986 -120428134 - RMER19C LTR ERVK 0 611 1 3 853 4203 211 91 13 chr4 35201986 35202535 -120427585 + Lx7 LINE L1 6448 7041 -655 3 853 360 289 84 74 chr4 35202643 35202942 -120427178 + RMER17C LTR ERVK 66 367 -43 3 853 2583 213 17 110 chr4 35202943 35203636 -120426484 + Lx7 LINE L1 7045 7679 -17 3 853 871 168 44 44 chr4 35203636 35203817 -120426303 - B2_Mm2 SINE B2 -14 181 1 3 853 2583 213 17 110 chr4 35203817 35203842 -120426278 + Lx7 LINE L1 7680 7696 0 3 853 369 315 141 17 chr4 35204167 35204412 -120425708 - MER33 DNA MER1_type -2 322 45 3 853 639 142 0 0 chr4 35204603 35204709 -120425411 + (CAT)n Simple_repeat Simple_repeat 1 106 0 3 853 886 208 34 28 chr4 35204713 35204891 -120425229 - B3 SINE B2 -23 193 15 3 853 2023 125 108 102 chr4 35205486 35205958 -120424162 + IAPLTR2_Mm LTR ERVK 1 475 0 3 853 303 49 0 0 chr4 35206205 35206246 -120423874 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 853 1261 29 0 0 chr4 35206246 35206385 -120423735 - B1_Mm SINE Alu -8 139 1 3 853 198 0 0 0 chr4 35206656 35206678 -120423442 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 3 853 33 0 0 0 chr4 35207052 35207085 -120423035 + AT_rich Low_complexity Low_complexity 1 33 0 3 853 27 0 0 0 chr4 35207137 35207164 -120422956 + AT_rich Low_complexity Low_complexity 1 27 0 3 853 967 82 0 7 chr4 35208060 35208195 -120421925 - L1Md_F2 LINE L1 -14 6568 6435 3 853 185 367 0 18 chr4 35208255 35208366 -120421754 + MER5A DNA MER1_type 31 139 -50 3 853 184 357 0 30 chr4 35208287 35208388 -120421732 - MER5A DNA MER1_type -50 139 42 3 853 1805 161 30 77 chr4 35208388 35208751 -120421369 + ORR1B1 LTR MaLR 41 386 -8 3 853 6627 61 34 1 chr4 35209852 35210673 -120419447 + L1_Mus3 LINE L1 5775 6622 -16 3 853 1068 103 0 0 chr4 35210673 35210829 -120419291 + (GAA)n Simple_repeat Simple_repeat 1 156 0 3 853 29 70 0 0 chr4 35211119 35211176 -120418944 + AT_rich Low_complexity Low_complexity 1 57 0 3 853 2252 140 93 0 chr4 35211617 35211973 -120418147 + ORR1B1 LTR MaLR 5 393 -1 3 853 303 28 0 0 chr4 35212178 35212214 -120417906 + (A)n Simple_repeat Simple_repeat 1 36 0 3 853 21 36 0 0 chr4 35213419 35213447 -120416673 + AT_rich Low_complexity Low_complexity 1 28 0 3 853 609 236 14 14 chr4 35214480 35214626 -120415494 - B1F SINE Alu -1 148 3 3 853 489 76 0 0 chr4 35214640 35214706 -120415414 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 853 232 221 206 0 chr4 35214894 35214962 -120415158 - L2b LINE L2 0 3426 3317 3 853 372 133 0 0 chr4 35214975 35215035 -120415085 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 853 601 289 35 103 chr4 35215118 35215430 -120414690 - MLT1B LTR MaLR 0 390 100 3 853 282 125 0 0 chr4 35215464 35215512 -120414608 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 853 373 198 0 133 chr4 35215962 35215990 -120414130 + MT2B LTR ERVL 143 233 -368 3 853 605 52 0 0 chr4 35215990 35216067 -120414053 + B1_Mus1 SINE Alu 1 77 -71 3 853 714 260 33 17 chr4 35216062 35216347 -120413773 + ORR1D2 LTR MaLR 32 369 -1 3 853 16741 136 41 16 chr4 35216678 35217495 -120412625 + L1VL4 LINE L1 204 1044 -2515 3 853 2344 96 41 22 chr4 35217495 35217596 -120412524 + L1_Mus3 LINE L1 6268 6368 -270 3 853 228 35 0 0 chr4 35217596 35217625 -120412495 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 853 2344 96 41 22 chr4 35217625 35217638 -120412482 + L1_Mus3 LINE L1 6369 6378 -260 3 853 183 42 0 0 chr4 35217638 35217662 -120412458 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 853 2344 96 41 22 chr4 35217662 35217910 -120412210 + L1_Mus3 LINE L1 6379 6638 0 3 853 16741 79 21 15 chr4 35217910 35220127 -120409993 + L1VL4 LINE L1 1045 3278 -281 3 853 7433 102 10 12 chr4 35220132 35221221 -120408899 + L1_Mus4 LINE L1 5572 6632 -4 3 853 289 344 31 0 chr4 35222165 35222261 -120407859 - Charlie15a DNA MER1_type -25 199 101 3 853 524 232 34 161 chr4 35222544 35222893 -120407227 + RMER17C LTR ERVK 1 305 -105 3 853 21 0 0 0 chr4 35222931 35222952 -120407168 + AT_rich Low_complexity Low_complexity 1 21 0 3 853 2135 119 70 138 chr4 35223400 35223857 -120406263 + RLTR23 LTR ERV1 1 426 -4 3 853 414 0 0 0 chr4 35224095 35224141 -120405979 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 853 182 37 0 36 chr4 35224142 35224170 -120405950 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 3 853 2338 113 53 0 chr4 35224184 35224539 -120405581 - Lx LINE L1 -13 6641 6268 3 853 22101 71 6 31 chr4 35224539 35224616 -120405504 + L1_Mm LINE L1 2815 2891 -2992 3 853 1267 41 0 0 chr4 35224616 35224763 -120405357 + B1_Mm SINE Alu 1 147 0 3 853 22101 71 6 31 chr4 35224763 35227516 -120402604 + L1_Mm LINE L1 2892 5587 -296 3 853 7446 73 28 3 chr4 35227516 35228486 -120401634 + L1Md_F2 LINE L1 5589 6582 0 3 853 22101 71 6 31 chr4 35228486 35228712 -120401408 + L1_Mm LINE L1 5588 5793 -90 3 853 207 0 0 0 chr4 35228740 35228763 -120401357 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 853 232 175 69 17 chr4 35228763 35228814 -120401306 + Lx7 LINE L1 7541 7595 -101 3 853 235 25 75 0 chr4 35228856 35228896 -120401224 + Lx7 LINE L1 7654 7696 0 3 853 689 280 133 16 chr4 35228902 35229279 -120400841 + L1MA6 LINE L1 5879 6299 -1 3 853 439 279 0 0 chr4 35229302 35229406 -120400714 + Lx9 LINE L1 7067 7170 -474 3 853 2662 170 32 93 chr4 35229437 35230212 -120399908 - RLTR13D6 LTR ERVK 0 902 3 3 853 799 281 86 7 chr4 35230214 35230483 -120399637 + Lx9 LINE L1 7198 7487 -157 3 853 201 39 0 0 chr4 35230547 35230573 -120399547 + (T)n Simple_repeat Simple_repeat 1 26 0 3 853 24 0 0 0 chr4 35230592 35230616 -120399504 + AT_rich Low_complexity Low_complexity 1 24 0 3 853 839 109 0 23 chr4 35230617 35230749 -120399371 - B1_Mur4 SINE Alu -6 144 16 3 853 29 0 0 0 chr4 35230752 35230781 -120399339 + AT_rich Low_complexity Low_complexity 1 29 0 3 853 543 298 31 16 chr4 35230781 35230972 -120399148 - B3A SINE B2 0 198 5 3 853 837 300 69 48 chr4 35231079 35231499 -120398621 + MLT1D LTR MaLR 72 500 -5 3 853 1681 291 114 33 chr4 35231519 35232388 -120397732 - Zaphod DNA Tip100 -3069 962 24 4 853 819 163 0 0 chr4 35232700 35232847 -120397273 + GA-rich Low_complexity Low_complexity 2 148 0 4 853 3281 151 68 46 chr4 35232847 35233695 -120396425 + RMER6C LTR ERVK 5 716 -4 4 853 664 281 57 129 chr4 35234347 35234928 -120395192 - RMER20B LTR ERVK -8 619 31 4 853 1178 272 27 15 chr4 35234986 35235318 -120394802 - Lx6 LINE L1 -27 7433 7098 4 853 245 258 16 31 chr4 35235631 35235695 -120394425 - Lx9 LINE L1 -1684 5960 5898 4 853 1893 111 15 65 chr4 35236145 35236483 -120393637 + ORR1A4 LTR MaLR 1 321 -8 4 853 361 284 187 0 chr4 35237145 35237382 -120392738 + MLT1A0 LTR MaLR 70 350 -15 4 853 527 278 141 41 chr4 35238673 35238992 -120391128 + RMER5 LTR ERV1 52 402 -132 4 853 460 306 103 11 chr4 35239098 35239273 -120390847 + MER20 DNA MER1_type 25 215 -4 4 853 3623 174 119 9 chr4 35239285 35240169 -120389951 - RLTR25B LTR ERVK 0 1103 1 4 853 4949 142 5 22 chr4 35240306 35240454 -120389666 - L1_Mm LINE L1 -809 5074 4934 4 853 2854 21 0 24 chr4 35240454 35240789 -120389331 - IAPLTR2b LTR ERVK 0 327 1 4 853 4949 142 5 22 chr4 35240789 35241469 -120388651 - L1_Mm LINE L1 -950 4933 4260 4 853 7171 115 14 21 chr4 35241472 35243005 -120387115 + Lx LINE L1 5134 6648 -6 4 853 3358 51 0 2 chr4 35243842 35244257 -120385863 + L1Md_F2 LINE L1 6157 6570 -12 4 853 325 282 108 9 chr4 35244328 35244439 -120385681 + B4 SINE B4 1 122 -170 4 853 378 0 0 0 chr4 35244442 35244484 -120385636 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 853 360 259 70 61 chr4 35244487 35244602 -120385518 + B4 SINE B4 159 274 -18 4 853 276 327 37 0 chr4 35244772 35244879 -120385241 + MER5A DNA MER1_type 6 116 -73 4 853 259 315 0 63 chr4 35245355 35245450 -120384670 + RMER1C Other Other 32 120 -1222 4 853 897 304 88 6 chr4 35245506 35245834 -120384286 + RMER1C Other Other 530 884 -458 4 853 574 268 0 0 chr4 35246034 35246172 -120383948 + B3A SINE B2 1 138 -60 4 853 357 24 0 0 chr4 35246200 35246242 -120383878 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 853 650 253 12 6 chr4 35246594 35246757 -120383363 - Lx8 LINE L1 -212 7261 7098 4 853 282 313 64 64 chr4 35246961 35247275 -120382845 - L1ME2 LINE L1 -141 6023 5710 4 853 790 233 69 0 chr4 35247280 35247469 -120382651 + Lx8 LINE L1 6906 7107 -366 4 853 564 276 106 25 chr4 35247465 35247710 -120382410 + Lx8 LINE L1 7209 7473 0 4 853 216 0 0 0 chr4 35247720 35247744 -120382376 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 853 1184 29 0 0 chr4 35247744 35247881 -120382239 - B1_Mus1 SINE Alu -10 138 2 4 853 259 262 100 0 chr4 35247919 35247999 -120382121 - L1ME2 LINE L1 -750 5694 5607 4 853 8248 45 8 1 chr4 35248548 35249840 -120380280 - L1Md_F3 LINE L1 0 6584 5283 4 853 1027 114 11 0 chr4 35249971 35250146 -120379974 + (CCAA)n Simple_repeat Simple_repeat 2 178 0 4 853 330 231 0 58 chr4 35250390 35250459 -120379661 - URR1B DNA MER1_type -160 65 1 4 853 216 97 0 0 chr4 35251016 35251047 -120379073 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 853 303 104 0 0 chr4 35252864 35252912 -120377208 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 853 276 309 80 13 chr4 35253288 35253439 -120376681 + MLT1D LTR MaLR 74 234 -393 4 853 286 185 136 0 chr4 35253726 35253807 -120376313 + MLT1D LTR MaLR 414 505 0 4 853 199 302 115 0 chr4 35254757 35254853 -120375267 + MIRb SINE MIR 37 143 -125 4 853 454 189 117 9 chr4 35254911 35255039 -120375081 - B1_Mur1 SINE Alu 0 149 9 4 853 721 232 69 42 chr4 35255327 35255543 -120374577 - ID_B1 SINE B4 0 224 3 4 853 442 277 25 57 chr4 35255556 35255713 -120374407 + B3A SINE B2 1 152 -46 4 853 666 58 0 0 chr4 35255830 35255917 -120374203 + (CCAA)n Simple_repeat Simple_repeat 4 90 0 4 853 1344 212 69 45 chr4 35256422 35256797 -120373323 + MTD LTR MaLR 22 405 -14 4 853 430 305 114 12 chr4 35257546 35257712 -120372408 - ID_B1 SINE B4 -21 203 21 4 853 297 230 93 13 chr4 35257649 35257724 -120372396 - ID2 SINE ID -2 81 1 4 853 338 222 168 20 chr4 35257802 35257903 -120372217 + MER44D DNA MER2_type 2 117 -588 4 853 814 218 42 47 chr4 35257979 35258191 -120371929 - B3 SINE B2 0 216 6 4 106 282 56 0 0 chr4 35258346 35258382 -120371738 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 854 330 159 0 0 chr4 35258706 35258775 -120371345 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 854 362 296 90 27 chr4 35258963 35259074 -120371046 + B4A SINE B4 2 119 -173 4 854 1214 54 0 0 chr4 35259249 35259396 -120370724 - B1_Mus1 SINE Alu 0 148 2 4 854 670 88 0 0 chr4 35259396 35259487 -120370633 - 4.5SRNA scRNA scRNA -3 91 1 4 854 964 101 94 0 chr4 35260572 35260731 -120369389 + B2_Mm2 SINE B2 15 188 -7 4 854 3955 68 4 3 chr4 35260750 35261260 -120368860 + L1Md_F2 LINE L1 5101 5586 -297 4 854 7845 49 35 2 chr4 35261260 35262222 -120367898 + L1Md_F2 LINE L1 5587 6580 -2 4 854 289 314 76 0 chr4 35263785 35263903 -120366217 + Charlie15a DNA MER1_type 96 222 -2 4 854 822 103 133 13 chr4 35264860 35265018 -120365102 + RLTR41 LTR ERV1 1 177 -269 4 854 1717 138 23 32 chr4 35265039 35265347 -120364773 + RLTR41 LTR ERV1 135 439 -7 4 854 255 288 12 0 chr4 35266175 35266255 -120363865 + MIR SINE MIR 20 100 -162 4 854 485 32 0 16 chr4 35266261 35266325 -120363795 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 854 857 221 28 0 chr4 35266562 35266743 -120363377 - Lx9 LINE L1 -1112 6532 6347 4 854 380 71 18 0 chr4 35266744 35266800 -120363320 + (TATG)n Simple_repeat Simple_repeat 4 60 0 4 854 242 121 86 0 chr4 35267307 35267365 -120362755 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 4 854 582 75 0 0 chr4 35267422 35267502 -120362618 + (TAAA)n Simple_repeat Simple_repeat 2 81 0 4 854 303 28 0 0 chr4 35269308 35269344 -120360776 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 854 1158 45 0 0 chr4 35269344 35269478 -120360642 - B1_Mm SINE Alu -13 134 1 4 854 398 158 426 0 chr4 35269552 35269653 -120360467 + B1_Mus1 SINE Alu 5 148 0 4 854 216 0 0 0 chr4 35269914 35269938 -120360182 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 854 31 21 0 20 chr4 35269943 35269979 -120360141 + AT_rich Low_complexity Low_complexity 1 36 0 4 854 946 231 9 14 chr4 35269979 35270190 -120359930 - B3 SINE B2 -3 213 4 4 854 31 21 0 20 chr4 35270190 35270202 -120359918 + AT_rich Low_complexity Low_complexity 1 12 0 4 854 281 250 0 0 chr4 35270323 35270383 -120359737 + ID_B1 SINE B4 155 214 -10 4 854 210 284 45 0 chr4 35270324 35270391 -120359729 + B1F SINE Alu 78 147 -2 4 854 230 253 126 46 chr4 35271386 35271473 -120358647 + MLT1H2 LTR MaLR 109 202 -287 4 854 1588 217 30 14 chr4 35271932 35272296 -120357824 - ORR1D2 LTR MaLR 0 370 1 4 854 459 0 0 0 chr4 35272390 35272441 -120357679 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 854 225 0 0 0 chr4 35272441 35272465 -120357655 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 854 645 209 28 50 chr4 35272465 35272606 -120357514 - B1_Mur1 SINE Alu -11 138 1 4 854 767 85 15 15 chr4 35272887 35273019 -120357101 + (TCTCCC)n Simple_repeat Simple_repeat 2 133 0 4 854 314 335 18 54 chr4 35273038 35273205 -120356915 - RSINE1 SINE B4 0 165 5 4 854 371 21 21 0 chr4 35273426 35273474 -120356646 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 4 854 702 236 0 14 chr4 35275061 35275203 -120354917 + B1_Mus1 SINE Alu 1 140 -8 4 854 230 364 0 0 chr4 35275273 35275350 -120354770 + B4A SINE B4 2 78 -214 4 854 991 165 55 0 chr4 35275587 35275769 -120354351 + RLTR28 LTR ERVL 1 192 -332 4 854 2487 154 31 2 chr4 35275789 35276211 -120353909 - L1_Mur2 LINE L1 -814 5063 4630 4 854 4785 208 77 10 chr4 35276218 35277254 -120352866 + Lx5 LINE L1 5926 7031 -19 4 854 748 134 161 94 chr4 35277254 35277477 -120352643 + RLTR28 LTR ERVL 226 463 -61 4 854 199 29 56 28 chr4 35278076 35278112 -120352008 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 854 1328 200 75 7 chr4 35278694 35278986 -120351134 - MTD LTR MaLR 0 419 108 4 854 294 333 9 19 chr4 35279190 35279297 -120350823 + MER5A1 DNA MER1_type 57 162 -4 4 854 16562 76 2 14 chr4 35279629 35282355 -120347765 + L1Md_F LINE L1 727 3420 -2463 4 854 1926 117 0 23 chr4 35282369 35282675 -120347445 + L1Md_F2 LINE L1 6284 6582 0 4 854 413 229 0 30 chr4 35282807 35282906 -120347214 + PB1D10 SINE Alu 21 116 -1 4 854 954 262 0 14 chr4 35283131 35283348 -120346772 + B3 SINE B2 2 215 -1 4 854 216 0 0 0 chr4 35283348 35283372 -120346748 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 854 303 263 214 13 chr4 35283692 35283846 -120346274 + MER53 DNA hAT 1 185 -8 4 854 413 347 49 38 chr4 35284161 35284508 -120345612 - Lx8 LINE L1 -2 7471 7121 4 854 23 0 0 0 chr4 35284508 35284531 -120345589 + AT_rich Low_complexity Low_complexity 1 23 0 4 854 1327 209 128 34 chr4 35284609 35284991 -120345129 - Lx7 LINE L1 0 7696 7279 4 854 2017 92 22 9 chr4 35284991 35285308 -120344812 - ORR1A4 LTR MaLR -7 322 2 4 854 665 328 66 0 chr4 35285308 35285564 -120344556 - Lx8 LINE L1 -381 7092 6820 4 854 384 135 0 0 chr4 35285753 35285827 -120344293 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 854 394 329 46 62 chr4 35285875 35286115 -120344005 + RMER13A LTR ERVK 1 236 -624 4 854 792 251 71 54 chr4 35287772 35288012 -120342108 + B4A SINE B4 39 282 -10 4 854 2335 129 18 20 chr4 35288353 35288469 -120341651 + ORR1B1 LTR MaLR 1 117 -277 4 854 2980 155 54 122 chr4 35288469 35289209 -120340911 + RMER6C LTR ERVK 1 690 0 4 854 2335 129 18 20 chr4 35289209 35289487 -120340633 + ORR1B1 LTR MaLR 118 394 0 4 854 6251 177 42 14 chr4 35289487 35290710 -120339410 + ORR1B1-int LTR MaLR 1 1258 0 4 854 2167 192 32 10 chr4 35290710 35291120 -120339000 + ORR1B1 LTR MaLR 1 419 -2 4 854 639 159 0 0 chr4 35292528 35292641 -120337479 + CT-rich Low_complexity Low_complexity 2 114 0 4 854 878 274 44 26 chr4 35293404 35293674 -120336446 - B4A SINE B4 -8 284 10 4 854 1270 193 108 60 chr4 35293936 35294288 -120335832 + ORR1D1 LTR MaLR 6 374 0 4 854 2861 232 81 30 chr4 35294288 35295105 -120335015 + ORR1D1-int LTR MaLR 1 900 -470 4 854 946 174 6 17 chr4 35295105 35295286 -120334834 - RMER6B LTR ERVK 0 461 283 5 854 365 100 0 0 chr4 35295289 35295339 -120334781 + Lx4B LINE L1 6637 6686 -372 5 854 293 136 119 15 chr4 35295390 35295467 -120334653 + ORR1D1-int LTR MaLR 1298 1370 0 4 854 1351 210 89 14 chr4 35295467 35295699 -120334421 + ORR1D1 LTR MaLR 1 231 -143 4 854 2135 126 22 3 chr4 35295699 35296018 -120334102 + ORR1A3 LTR MaLR 1 325 -1 5 854 1351 210 89 14 chr4 35296018 35296133 -120333987 + ORR1D1 LTR MaLR 232 374 0 4 854 702 289 61 0 chr4 35296422 35296619 -120333501 - B3 SINE B2 -7 209 1 5 854 193 267 0 0 chr4 35297140 35297185 -120332935 + MIRm SINE MIR 229 273 -3 5 854 1214 98 54 5 chr4 35298103 35298287 -120331833 - B2_Mm2 SINE B2 -2 193 1 5 854 35 0 0 0 chr4 35298305 35298340 -120331780 + AT_rich Low_complexity Low_complexity 1 35 0 5 854 201 337 53 21 chr4 35298636 35298730 -120331390 - MIRb SINE MIR -94 174 78 5 854 227 268 14 0 chr4 35299019 35299090 -120331030 + CT-rich Low_complexity Low_complexity 4 75 0 5 854 21 0 0 0 chr4 35299118 35299139 -120330981 + AT_rich Low_complexity Low_complexity 1 21 0 5 854 1107 96 0 0 chr4 35303927 35304073 -120326047 - B1_Mus1 SINE Alu -1 147 2 5 854 1731 50 32 0 chr4 35304866 35305084 -120325036 - L1_Mus1 LINE L1 0 6567 6343 5 854 24 67 0 0 chr4 35305380 35305425 -120324695 + AT_rich Low_complexity Low_complexity 1 45 0 5 854 507 150 204 0 chr4 35305556 35305669 -120324451 - B1_Mur3 SINE Alu 0 149 14 5 854 340 300 9 18 chr4 35307353 35307465 -120322655 + CT-rich Low_complexity Low_complexity 5 115 0 5 854 216 0 0 0 chr4 35307683 35307707 -120322413 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 854 605 161 0 0 chr4 35308011 35308207 -120321913 + (CAGAGA)n Simple_repeat Simple_repeat 1 196 0 5 854 1183 98 109 33 chr4 35308235 35308249 -120321871 - URR1A DNA MER1_type 0 226 217 5 854 2332 83 6 55 chr4 35308249 35308593 -120321527 + ORR1A2 LTR MaLR 1 327 0 5 854 1183 98 109 33 chr4 35308593 35308788 -120321332 - URR1A DNA MER1_type -10 216 1 5 854 477 62 0 0 chr4 35311808 35311873 -120318247 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 854 621 0 0 0 chr4 35312177 35312246 -120317874 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 854 340 311 31 92 chr4 35314140 35314335 -120315785 - MLT1E3 LTR MaLR -183 441 259 5 854 477 0 0 0 chr4 35315132 35315185 -120314935 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 854 305 269 21 21 chr4 35315480 35315575 -120314545 + ID_B1 SINE B4 123 217 -7 5 854 4368 26 0 2 chr4 35315665 35316165 -120313955 + L1Md_F2 LINE L1 6084 6582 0 5 854 335 319 9 17 chr4 35318113 35318228 -120311892 + PB1D7 SINE Alu 1 114 -6 5 854 640 216 73 15 chr4 35318332 35318468 -120311652 - B1_Mm SINE Alu -3 144 1 5 854 323 299 179 6 chr4 35319657 35319825 -120310295 - B3A SINE B2 0 198 2 5 854 186 103 0 0 chr4 35320088 35320117 -120310003 + (T)n Simple_repeat Simple_repeat 1 29 0 5 854 243 0 0 0 chr4 35321055 35321082 -120309038 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 854 387 0 0 0 chr4 35322471 35322514 -120307606 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 854 29 60 0 0 chr4 35322864 35322914 -120307206 + AT_rich Low_complexity Low_complexity 1 50 0 5 854 180 313 84 0 chr4 35323732 35323815 -120306305 - MIR SINE MIR -106 156 67 5 854 2870 39 0 3 chr4 35324611 35324949 -120305171 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 854 57319 18 13 5 chr4 35324949 35331371 -120298749 + IAPEz-int LTR ERVK 8 6481 0 5 854 2918 30 0 3 chr4 35331371 35331709 -120298411 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 854 432 0 0 0 chr4 35331849 35331897 -120298223 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 5 854 381 22 0 0 chr4 35332060 35332106 -120298014 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 854 3326 26 37 0 chr4 35332953 35333335 -120296785 + MTA_Mm LTR MaLR 1 396 0 5 854 398 20 20 0 chr4 35333447 35333498 -120296622 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 854 334 235 49 0 chr4 35333734 35333815 -120296305 + B1_Mur2 SINE Alu 9 93 -56 5 854 538 261 156 17 chr4 35333806 35333985 -120296135 - MER74B LTR ERVL -418 204 1 5 854 289 227 114 0 chr4 35334233 35334321 -120295799 - RMER10A LTR ERVL -27 415 318 5 854 501 17 0 0 chr4 35334438 35334496 -120295624 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 854 1470 111 5 0 chr4 35334927 35335135 -120294985 - MurERV4_19-int LTR ERVK -3253 2527 2319 5 854 428 285 96 44 chr4 35335135 35335407 -120294713 - L1ME1 LINE L1 -214 5965 5680 5 854 347 268 56 35 chr4 35335400 35335656 -120294464 + L1M5 LINE L1 5180 5448 -792 5 854 897 272 22 29 chr4 35335754 35336030 -120294090 - B4A SINE B4 -18 274 1 5 854 286 306 95 48 chr4 35336323 35336512 -120293608 + MER57D LTR ERV1 212 409 -2 5 854 216 0 0 0 chr4 35336632 35336656 -120293464 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 854 408 181 32 83 chr4 35337346 35337503 -120292617 - Lx9 LINE L1 -7 7637 7489 5 854 318 330 0 29 chr4 35337654 35337757 -120292363 - PB1D10 SINE Alu -13 104 5 5 854 278 50 25 0 chr4 35339718 35339758 -120290362 + (GGA)n Simple_repeat Simple_repeat 1 41 0 5 854 240 111 0 0 chr4 35340266 35340302 -120289818 + (A)n Simple_repeat Simple_repeat 1 36 0 5 854 1087 88 0 26 chr4 35340696 35340848 -120289272 + B1_Mus1 SINE Alu 1 148 0 5 854 318 314 19 19 chr4 35341113 35341220 -120288900 + PB1D10 SINE Alu 11 117 0 5 854 298 292 90 90 chr4 35341269 35341480 -120288640 + MLT1A LTR MaLR 155 365 -9 5 854 599 294 116 29 chr4 35343691 35343968 -120286152 - RMER15 LTR ERVL 0 575 275 5 854 198 0 0 0 chr4 35344030 35344052 -120286068 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 5 854 1170 55 0 20 chr4 35344053 35344202 -120285918 - B1_Mus1 SINE Alu 0 148 3 5 854 2534 265 95 40 chr4 35344274 35345072 -120285048 - RMER15-int LTR ERVL -3 4996 4155 5 854 369 348 62 19 chr4 35345151 35345359 -120284761 - RMER15-int LTR ERVL -2765 2234 2018 5 854 844 310 70 28 chr4 35345508 35345866 -120284254 - RMER15-int LTR ERVL -3146 1853 1481 5 854 705 56 0 0 chr4 35345892 35345982 -120284138 + (TCC)n Simple_repeat Simple_repeat 1 90 0 5 854 223 354 12 12 chr4 35345986 35346066 -120284054 - ID SINE ID -135 89 10 5 854 1786 316 48 11 chr4 35346070 35346691 -120283429 - RMER15-int LTR ERVL -3528 1471 828 5 854 583 171 8 8 chr4 35347182 35347312 -120282808 + CT-rich Low_complexity Low_complexity 2 131 0 5 854 474 18 0 0 chr4 35347493 35347548 -120282572 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 854 309 294 28 49 chr4 35347674 35347817 -120282303 + MER5A1 DNA MER1_type 5 144 -22 5 854 303 93 0 0 chr4 35348795 35348838 -120281282 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 5 854 226 318 46 18 chr4 35349483 35349592 -120280528 - MIR SINE MIR -107 155 44 5 854 441 0 0 0 chr4 35350280 35350329 -120279791 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 854 191 349 23 51 chr4 35350898 35351029 -120279091 - L2b LINE L2 0 3387 3263 5 854 225 250 18 0 chr4 35351243 35351299 -120278821 - L2b LINE L2 -6 3369 3313 5 854 432 0 0 0 chr4 35352457 35352505 -120277615 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 854 425 329 11 51 chr4 35353760 35353936 -120276184 + Tigger5 DNA MER2_type 43 211 -2195 5 854 246 265 0 0 chr4 35353927 35353995 -120276125 + Tigger5 DNA MER2_type 2289 2356 -50 5 854 2265 34 0 0 chr4 35354466 35354729 -120275391 + L1Md_T LINE L1 6320 6582 0 5 854 189 0 0 0 chr4 35355596 35355617 -120274503 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 854 1194 49 7 0 chr4 35356310 35356454 -120273666 - B1_Mus1 SINE Alu 0 148 4 5 854 1037 265 97 35 chr4 35358220 35358624 -120271496 + RLTR20A2 LTR ERVK 1 401 -177 5 854 897 48 8 16 chr4 35358624 35358752 -120271368 + L1_Mus2 LINE L1 6439 6565 -1 5 854 336 195 10 121 chr4 35358752 35358803 -120271317 + RLTR20A2 LTR ERVK 449 491 -77 5 854 360 0 0 0 chr4 35358947 35358987 -120271133 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 854 351 0 0 0 chr4 35358987 35359025 -120271095 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 854 510 70 0 0 chr4 35359974 35360045 -120270075 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 854 379 246 64 24 chr4 35360045 35360170 -120269950 - ID_B1 SINE B4 -9 215 86 5 854 445 283 65 79 chr4 35360183 35360398 -120269722 - MER20 DNA MER1_type -7 212 1 5 854 1211 7 0 0 chr4 35361141 35361284 -120268836 - L1Md_T LINE L1 0 6582 6440 5 854 22 35 0 0 chr4 35362407 35362436 -120267684 + AT_rich Low_complexity Low_complexity 1 29 0 5 854 621 207 17 8 chr4 35365909 35366026 -120264094 + B3 SINE B2 1 118 -98 5 854 377 304 195 4 chr4 35366038 35366279 -120263841 - B4A SINE B4 -1 291 5 5 854 585 0 0 0 chr4 35369631 35369696 -120260424 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 854 485 303 45 40 chr4 35369710 35369984 -120260136 - L1M2 LINE L1 -3378 2765 2487 5 854 500 300 0 0 chr4 35370153 35370273 -120259847 - B4 SINE B4 -161 131 12 5 854 373 279 16 0 chr4 35370275 35370404 -120259716 - L1M2 LINE L1 -3636 2507 2377 5 854 926 264 161 3 chr4 35370415 35370726 -120259394 - MTD LTR MaLR 0 419 60 5 854 800 85 0 8 chr4 35370782 35370901 -120259219 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 5 854 319 277 77 93 chr4 35371395 35371566 -120258554 + B2_Mm2 SINE B2 2 170 -25 5 854 495 0 0 0 chr4 35371566 35371621 -120258499 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 854 319 277 77 93 chr4 35371621 35371632 -120258488 + B2_Mm2 SINE B2 171 181 -14 5 854 36874 68 1 16 chr4 35373052 35379346 -120250774 - L1Md_F2 LINE L1 0 6582 389 5 854 506 16 16 0 chr4 35379366 35379429 -120250691 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 5 854 464 352 122 14 chr4 35381341 35381701 -120248419 - LTR16B1 LTR ERVL -1 479 81 5 854 223 335 115 29 chr4 35382079 35382322 -120247798 + L2 LINE L2 2517 2780 -639 5 854 1636 62 57 0 chr4 35382378 35382589 -120247531 + L1Md_F2 LINE L1 6348 6570 -12 5 854 5556 31 39 3 chr4 35382591 35383260 -120246860 + L1Md_F2 LINE L1 5888 6580 -2 5 854 282 143 0 0 chr4 35383983 35384032 -120246088 + (GGA)n Simple_repeat Simple_repeat 3 51 0 5 854 3327 31 0 3 chr4 35385075 35385466 -120244654 + L1Md_A LINE L1 6193 6582 0 5 854 503 234 12 110 chr4 35385491 35385628 -120244492 + RSINE1 SINE B4 10 136 -29 5 854 2975 88 75 72 chr4 35385628 35386145 -120243975 - MURVY-LTR LTR ERV1 0 519 1 6 854 503 234 12 110 chr4 35386145 35386180 -120243940 + RSINE1 SINE B4 137 164 -1 5 854 228 260 26 52 chr4 35387633 35387701 -120242419 + B4 SINE B4 25 90 -202 6 854 466 310 21 0 chr4 35387701 35387846 -120242274 + RSINE1 SINE B4 3 150 -15 6 854 590 286 24 6 chr4 35388133 35388298 -120241822 + B4 SINE B4 125 292 0 6 854 492 18 0 0 chr4 35388320 35388377 -120241743 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 854 261 0 0 0 chr4 35388383 35388412 -120241708 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 6 854 1025 298 20 10 chr4 35388603 35388901 -120241219 - MTE2b LTR MaLR -74 305 5 6 106 843 129 0 0 chr4 35389393 35389548 -120240572 + (CA)n Simple_repeat Simple_repeat 2 156 0 6 855 793 325 17 42 chr4 35389901 35390309 -120239811 - Lx8 LINE L1 0 7473 7076 6 855 2508 234 44 27 chr4 35390336 35392132 -120237988 - Lx LINE L1 -99 7361 5229 6 855 6719 124 36 8 chr4 35392112 35393615 -120236505 - Lx LINE L1 -4 6650 5121 6 855 3215 151 32 78 chr4 35393632 35394116 -120236004 + L1_Mur2 LINE L1 4183 4656 -1221 6 855 4594 31 0 4 chr4 35394116 35394661 -120235459 - L1Md_F2 LINE L1 -4 6578 6036 6 855 3215 151 32 78 chr4 35394661 35394896 -120235224 + L1_Mur2 LINE L1 4657 4869 -1008 6 855 5885 69 21 0 chr4 35394902 35395660 -120234460 - L1_Mus1 LINE L1 0 6567 5794 6 855 2275 97 0 0 chr4 35395660 35395980 -120234140 + L1_Mus1 LINE L1 5469 5788 -95 6 855 1578 176 7 0 chr4 35395974 35396269 -120233851 + L1_Mur2 LINE L1 4864 5160 -726 6 855 1224 206 7 7 chr4 35396276 35396554 -120233566 - L1_Mur2 LINE L1 -598 5279 5002 6 855 2176 332 98 14 chr4 35397275 35398423 -120231697 - Lx8 LINE L1 -39 7434 6155 6 855 657 0 0 0 chr4 35398423 35398496 -120231624 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 855 1245 345 121 36 chr4 35398496 35398672 -120231448 - Lx8 LINE L1 -1542 6154 5974 6 855 1177 62 7 0 chr4 35398672 35398816 -120231304 - B1_Mus2 SINE Alu -1 146 2 6 855 22517 162 28 9 chr4 35398816 35404134 -120225986 - Lx8 LINE L1 -1723 5973 571 6 855 3164 256 139 26 chr4 35404137 35405940 -120224180 - L1_Mur3 LINE L1 -2591 3289 1284 6 855 288 0 0 0 chr4 35405941 35405973 -120224147 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 6 855 6213 169 196 24 chr4 35405997 35407702 -120222418 - Lx5 LINE L1 -75 6975 4957 6 855 1060 249 74 57 chr4 35407798 35408164 -120221956 + RMER13A LTR ERVK 95 466 -394 6 855 1020 102 27 5 chr4 35408408 35408595 -120221525 - L1_Mur2 LINE L1 -2560 3317 3127 6 855 9397 168 29 22 chr4 35408568 35410904 -120219216 - Lx5 LINE L1 -2572 3305 889 6 855 245 314 120 8 chr4 35411331 35411456 -120218664 - L2a LINE L2 -1 3425 3287 6 855 597 28 0 0 chr4 35411614 35411685 -120218435 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 855 372 270 161 9 chr4 35411686 35411798 -120218322 - B1F1 SINE Alu -8 141 13 6 855 2589 87 158 19 chr4 35412507 35412930 -120217190 - RLTR45 LTR ERVK 0 482 1 6 855 838 245 18 9 chr4 35413144 35413362 -120216758 + RMER1A Other Other 59 278 -752 6 855 872 187 146 0 chr4 35413362 35413581 -120216539 + RMER1B Other Other 813 1063 -3 6 855 243 0 0 0 chr4 35413742 35413769 -120216351 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 855 420 273 79 50 chr4 35413918 35414057 -120216063 - B1F1 SINE Alu -6 143 1 6 855 238 250 20 138 chr4 35414095 35414290 -120215830 - L1MC LINE L1 -2416 3730 3559 6 855 7175 28 1 0 chr4 35414299 35415185 -120214935 + L1Md_F2 LINE L1 4700 5586 -297 6 855 8149 46 1 2 chr4 35415185 35416179 -120213941 + L1Md_F2 LINE L1 5587 6579 -3 6 855 303 289 94 81 chr4 35416459 35416746 -120213374 - L1M5 LINE L1 -2905 3241 2927 6 855 689 271 23 0 chr4 35416746 35416923 -120213197 - B3A SINE B2 -17 181 1 6 855 303 289 94 81 chr4 35416923 35417252 -120212868 - L1M5 LINE L1 -3220 2926 2617 6 855 1382 239 98 6 chr4 35417282 35417618 -120212502 - MTEb LTR MaLR -7 372 6 6 855 367 320 103 51 chr4 35417626 35417840 -120212280 - L1MD LINE L1 -3558 2588 2364 6 855 393 278 156 4 chr4 35419862 35420093 -120210027 - L1MC3 LINE L1 -3 7782 7517 6 855 1384 117 5 0 chr4 35420221 35420426 -120209694 - Lx LINE L1 -535 6119 5914 6 855 3433 103 37 24 chr4 35420426 35420964 -120209156 + Lx LINE L1 6108 6652 -2 6 855 278 306 20 10 chr4 35421780 35421879 -120208241 - MER3 DNA MER1_type -16 193 94 6 855 2832 191 38 84 chr4 35422416 35423184 -120206936 - RLTR13D6 LTR ERVK 0 902 1 6 855 412 326 120 0 chr4 35423352 35423527 -120206593 + MER68 LTR ERVL 143 338 -225 6 855 393 286 47 16 chr4 35423850 35423991 -120206129 - B1F SINE Alu 0 149 3 6 855 23 33 0 0 chr4 35424107 35424137 -120205983 + AT_rich Low_complexity Low_complexity 1 30 0 6 855 265 334 29 42 chr4 35424940 35425057 -120205063 - B1F SINE Alu -32 117 6 6 855 368 315 90 7 chr4 35425555 35425699 -120204421 - MER2B DNA MER2_type -171 165 10 6 855 5142 65 32 9 chr4 35425908 35426592 -120203528 + L1_Mus1 LINE L1 5868 6567 0 6 855 558 79 0 0 chr4 35427371 35427447 -120202673 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 855 192 77 0 0 chr4 35427447 35427473 -120202647 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 855 250 295 67 11 chr4 35427654 35427743 -120202377 + ID_B1 SINE B4 79 172 -52 6 855 417 260 60 0 chr4 35427663 35427763 -120202357 + PB1D10 SINE Alu 6 111 -6 6 855 651 261 118 13 chr4 35427772 35428001 -120202119 + Lx8 LINE L1 7219 7471 -2 6 855 228 232 14 0 chr4 35428046 35428115 -120202005 - Lx5 LINE L1 -3 7047 6978 6 855 802 179 0 61 chr4 35428120 35428316 -120201804 - L1_Mur2 LINE L1 -660 5217 5034 6 855 225 352 151 40 chr4 35428727 35428952 -120201168 + MIRb SINE MIR 4 253 -15 6 855 1033 61 0 0 chr4 35429020 35429192 -120200928 - L1Md_Gf LINE L1 -4636 1250 982 6 855 631 30 10 20 chr4 35429192 35429294 -120200826 + L1Md_F3 LINE L1 6470 6570 -14 6 855 304 338 56 49 chr4 35429632 35429775 -120200345 - MIR3 SINE MIR -2 206 63 6 855 25 0 0 0 chr4 35429828 35429853 -120200267 + AT_rich Low_complexity Low_complexity 1 25 0 6 855 2615 62 3 11 chr4 35429878 35430236 -120199884 - L1Md_F2 LINE L1 -2 6580 6226 6 855 314 293 0 26 chr4 35430342 35430419 -120199701 + B1_Mus1 SINE Alu 12 86 -62 6 855 8452 210 29 26 chr4 35430444 35432873 -120197247 - Lx6 LINE L1 -167 7293 4865 6 855 360 0 0 0 chr4 35432873 35432913 -120197207 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 6 855 711 0 0 0 chr4 35432913 35432992 -120197128 + (TTTTC)n Simple_repeat Simple_repeat 1 79 0 6 855 955 56 72 0 chr4 35432992 35433117 -120197003 - B1_Mus2 SINE Alu -13 134 1 6 855 8452 180 21 29 chr4 35433117 35433175 -120196945 - Lx6 LINE L1 -1016 4864 4811 6 855 443 18 18 0 chr4 35433175 35433231 -120196889 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 855 8452 180 21 29 chr4 35433231 35433820 -120196300 - Lx6 LINE L1 -1070 4810 4225 6 855 2958 128 34 67 chr4 35433820 35434356 -120195764 - Lx4A LINE L1 -3 7055 6538 6 855 8452 180 21 29 chr4 35434356 35434567 -120195553 - Lx6 LINE L1 -1656 4224 4021 6 855 339 343 64 0 chr4 35434914 35435054 -120195066 + MER58B DNA MER1_type 178 326 -15 6 855 250 255 0 0 chr4 35436901 35436952 -120193168 + MTEa LTR MaLR 9 59 -320 6 855 1222 249 81 56 chr4 35436997 35437494 -120192626 - RLTR12B LTR ERVK -19 509 1 6 855 319 284 179 43 chr4 35437622 35437784 -120192336 + MT2A LTR ERVL 187 370 -163 6 855 1059 97 0 20 chr4 35437880 35438028 -120192092 + B1_Mus2 SINE Alu 2 146 -1 6 855 2896 120 9 18 chr4 35438041 35438484 -120191636 - Lx3B LINE L1 0 6973 6535 6 855 429 20 0 0 chr4 35438504 35438554 -120191566 + (CTA)n Simple_repeat Simple_repeat 1 50 0 6 855 453 313 0 35 chr4 35438571 35438740 -120191380 - RSINE1 SINE B4 0 165 3 6 855 2327 164 8 5 chr4 35438786 35439179 -120190941 - ORR1B1 LTR MaLR 0 394 1 6 855 718 194 12 42 chr4 35439480 35439683 -120190437 + ORR1B1 LTR MaLR 1 168 -199 6 855 2977 45 16 0 chr4 35439707 35440081 -120190039 + L1Md_F2 LINE L1 6203 6582 0 6 855 505 308 98 42 chr4 35440169 35440528 -120189592 + MTEa LTR MaLR 1 379 0 6 855 473 295 99 33 chr4 35440821 35441186 -120188934 + Lx9 LINE L1 7215 7603 -41 6 855 242 27 81 0 chr4 35441186 35441223 -120188897 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 6 855 312 277 57 47 chr4 35441506 35441612 -120188508 - MIR3 SINE MIR -24 184 78 6 855 196 247 130 33 chr4 35442300 35442392 -120187728 + L2c LINE L2 3285 3385 -2 6 855 11098 47 2 0 chr4 35443030 35445182 -120184938 - L1Md_F2 LINE L1 0 6582 4427 6 855 7610 47 2 0 chr4 35445184 35446474 -120183646 - L1Md_F2 LINE L1 -12 6570 5278 6 855 2108 72 0 0 chr4 35446471 35446764 -120183356 - L1Md_F2 LINE L1 -1438 4445 4153 6 855 337 290 83 15 chr4 35446765 35446898 -120183222 + MIRb SINE MIR 89 230 -38 6 855 266 336 26 17 chr4 35447031 35447146 -120182974 - PB1D10 SINE Alu -1 116 1 6 855 205 258 85 85 chr4 35448494 35448600 -120181520 + L3 LINE CR1 4165 4270 -219 6 855 453 292 58 98 chr4 35448683 35448960 -120181160 + ORR1E LTR MaLR 51 316 -43 6 855 2027 140 129 3 chr4 35448988 35449338 -120180782 + ORR1B1 LTR MaLR 1 394 0 6 855 581 303 13 0 chr4 35450759 35450911 -120179209 + RSINE1 SINE B4 5 158 -7 6 855 254 382 54 4 chr4 35453213 35453452 -120176668 - Lx8 LINE L1 -292 7181 6931 6 855 677 275 44 29 chr4 35453474 35453793 -120176327 - L1_Rod LINE L1 -32 5848 5532 6 855 591 288 48 4 chr4 35454128 35454400 -120175720 - L1_Rod LINE L1 -365 5515 5232 6 855 930 254 19 0 chr4 35454427 35454632 -120175488 - B3 SINE B2 -6 210 2 6 855 839 313 38 26 chr4 35454683 35455106 -120175014 - Lx9 LINE L1 -220 7424 6997 6 855 859 199 7 0 chr4 35455478 35455629 -120174491 + RMER15 LTR ERVL 2 153 -422 6 855 432 329 56 0 chr4 35456140 35456301 -120173819 + MIRc SINE MIR 60 229 -39 6 855 347 307 25 34 chr4 35457393 35457511 -120172609 - PB1D10 SINE Alu 0 117 1 6 855 256 266 228 41 chr4 35457511 35457538 -120172582 - ID_B1 SINE B4 0 224 53 6 855 384 295 88 31 chr4 35457565 35457582 -120172538 - CYRA11_Mm Unknown Y-chromosome -214 403 256 6 855 1012 136 139 20 chr4 35457582 35457784 -120172336 + URR1A DNA MER1_type 1 226 0 6 855 5899 90 8 8 chr4 35458168 35458999 -120171121 - L1Md_F2 LINE L1 -1 6581 5751 6 855 5937 74 20 0 chr4 35458999 35459835 -120170285 + L1Md_F2 LINE L1 4876 5728 -155 6 855 22865 162 22 10 chr4 35459859 35465884 -120164236 - Lx LINE L1 -35 6619 526 6 855 1614 251 19 19 chr4 35465912 35466077 -120164043 + ORR1D2 LTR MaLR 1 164 -206 7 855 816 61 23 0 chr4 35466077 35466208 -120163912 - L1Md_F2 LINE L1 0 6582 6449 7 855 1614 251 19 19 chr4 35466208 35466408 -120163712 + ORR1D2 LTR MaLR 165 366 -4 7 855 547 266 130 0 chr4 35466492 35466684 -120163436 + ORR1D2-int LTR MaLR 176 392 -978 7 855 1946 226 22 5 chr4 35466685 35467090 -120163030 + MTC LTR MaLR 2 413 -8 7 855 3294 260 51 60 chr4 35467087 35468081 -120162039 + ORR1D2-int LTR MaLR 386 1370 0 7 855 1520 217 42 3 chr4 35468093 35468449 -120161671 + ORR1D2 LTR MaLR 1 370 0 7 855 422 143 0 13 chr4 35469937 35470015 -120160105 + GA-rich Low_complexity Low_complexity 2 78 0 7 855 309 354 74 60 chr4 35470015 35470313 -120159807 - ORR1E LTR MaLR -52 307 6 7 855 686 189 9 104 chr4 35470330 35470540 -120159580 - RLTR28 LTR ERVL 0 524 335 7 855 1312 31 0 0 chr4 35470540 35470700 -120159420 + B2_Mm1a SINE B2 1 160 -33 7 855 414 0 0 0 chr4 35470700 35470746 -120159374 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 7 855 1976 178 9 0 chr4 35470746 35471089 -120159031 - RLTR28 LTR ERVL -178 346 1 7 855 381 102 0 0 chr4 35471130 35471189 -120158931 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 7 855 220 341 0 0 chr4 35471237 35471322 -120158798 + GA-rich Low_complexity Low_complexity 1 85 0 7 855 184 293 98 111 chr4 35473166 35473400 -120156720 - L2b LINE L2 -14 3361 3131 7 855 293 281 30 40 chr4 35473736 35473836 -120156284 - MIRb SINE MIR -14 254 156 7 855 264 59 0 0 chr4 35474284 35474318 -120155802 + (T)n Simple_repeat Simple_repeat 1 34 0 7 855 18067 11 0 0 chr4 35474363 35477200 -120152920 - L1Md_A LINE L1 0 6582 3746 7 855 1697 167 91 29 chr4 35477330 35477681 -120152439 - RLTR30 LTR ERV1 -3 376 4 7 855 237 132 0 0 chr4 35477771 35477809 -120152311 + (TGG)n Simple_repeat Simple_repeat 1 38 0 7 855 414 39 0 0 chr4 35477809 35477861 -120152259 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 855 261 250 0 14 chr4 35477964 35478037 -120152083 - Lx7 LINE L1 -474 7222 7151 7 855 1525 240 19 4 chr4 35478037 35478510 -120151610 - L1_Mur3 LINE L1 -2226 3654 3175 7 855 195 69 0 0 chr4 35478533 35478562 -120151558 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 855 437 278 31 0 chr4 35478562 35478659 -120151461 - B1_Mur2 SINE Alu -45 104 5 7 855 438 177 71 116 chr4 35478663 35478861 -120151259 - L1_Mur3 LINE L1 -2688 3192 3004 7 855 594 206 222 47 chr4 35478854 35479387 -120150733 - L1_Mur3 LINE L1 -4151 1729 1092 7 855 231 36 0 0 chr4 35479411 35479439 -120150681 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 855 249 291 0 19 chr4 35479475 35479580 -120150540 - L1_Mur3 LINE L1 -6758 970 868 7 855 540 0 0 0 chr4 35480469 35480529 -120149591 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 855 725 98 0 0 chr4 35480649 35480751 -120149369 - Lx LINE L1 -333 6321 6220 7 855 271 262 35 12 chr4 35482254 35482339 -120147781 + MIRb SINE MIR 181 267 -1 7 855 2669 62 40 5 chr4 35482715 35483090 -120147030 - L1_Mus3 LINE L1 -5 6633 6246 7 855 961 152 6 0 chr4 35483357 35483528 -120146592 - L1_Mur2 LINE L1 -1586 4291 4120 7 855 37120 58 6 5 chr4 35483527 35490190 -120139930 - L1Md_T LINE L1 0 6582 99 7 855 350 339 18 9 chr4 35490373 35490486 -120139634 - MIRm SINE MIR -147 129 16 7 855 704 161 391 28 chr4 35490858 35491070 -120139050 - ORR1B1 LTR MaLR -5 322 34 7 855 344 277 66 42 chr4 35491998 35492239 -120137881 - L1MA6 LINE L1 -17 6283 6037 7 855 436 229 41 8 chr4 35492269 35492392 -120137728 + MER67D LTR ERV1 88 214 -300 7 855 251 54 0 26 chr4 35492447 35492485 -120137635 + (TAA)n Simple_repeat Simple_repeat 1 37 0 7 855 2182 306 65 35 chr4 35492495 35493580 -120136540 - Lx8 LINE L1 -9 7464 6348 7 855 1606 264 90 67 chr4 35493609 35493736 -120136384 + RLTR40 LTR ERVK 49 177 -640 7 855 1792 189 74 36 chr4 35493736 35493928 -120136192 - ORR1C1 LTR MaLR -1 377 159 7 855 249 108 0 0 chr4 35493928 35493965 -120136155 + (CAG)n Simple_repeat Simple_repeat 3 39 0 7 855 492 18 0 0 chr4 35493965 35494022 -120136098 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 855 1792 189 74 36 chr4 35494022 35494191 -120135929 - ORR1C1 LTR MaLR -220 158 2 7 855 1606 264 90 67 chr4 35494191 35494300 -120135820 + RLTR40 LTR ERVK 178 284 -533 7 855 195 42 0 0 chr4 35494300 35494324 -120135796 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 855 1606 264 90 67 chr4 35494324 35494765 -120135355 + RLTR40 LTR ERVK 285 741 -76 7 855 365 0 22 0 chr4 35494765 35494810 -120135310 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 855 1606 264 90 67 chr4 35494810 35494864 -120135256 + RLTR40 LTR ERVK 742 799 -18 7 855 625 319 86 14 chr4 35494893 35495019 -120135101 - Lx7 LINE L1 -1377 6319 6171 7 855 447 19 0 0 chr4 35495019 35495071 -120135049 + (TATG)n Simple_repeat Simple_repeat 1 52 0 7 855 625 319 86 14 chr4 35495071 35495458 -120134662 - Lx7 LINE L1 -1526 6170 5770 7 855 251 291 69 11 chr4 35495461 35495548 -120134572 + MER67D LTR ERV1 285 376 -138 7 855 225 377 29 94 chr4 35496161 35496331 -120133789 + MER5B DNA MER1_type 17 175 -3 7 855 468 72 0 0 chr4 35496477 35496546 -120133574 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 855 414 275 82 119 chr4 35496546 35496740 -120133380 - B3 SINE B2 -27 189 3 7 855 893 43 8 0 chr4 35496875 35496992 -120133128 + B1_Mus1 SINE Alu 31 148 0 7 855 518 68 33 33 chr4 35496992 35497113 -120133007 + (CAAAA)n Simple_repeat Simple_repeat 1 121 0 7 855 270 0 0 0 chr4 35497892 35497922 -120132198 + (T)n Simple_repeat Simple_repeat 1 30 0 7 855 2470 107 65 61 chr4 35498230 35498658 -120131462 - RLTR23 LTR ERV1 0 430 1 7 855 300 275 129 32 chr4 35498831 35498955 -120131165 + MER63B DNA AcHobo 298 433 -3 7 855 1968 130 78 42 chr4 35499409 35499582 -120130538 + ORR1C2 LTR MaLR 5 173 -211 7 855 269 68 23 0 chr4 35499582 35499626 -120130494 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 7 855 1968 130 78 42 chr4 35499626 35499813 -120130307 + ORR1C2 LTR MaLR 174 377 -7 7 855 322 362 9 0 chr4 35500136 35500241 -120129879 + MLT1E3 LTR MaLR 42 147 -506 1 855 1554 219 130 47 chr4 35500354 35500762 -120129358 - RMER4B LTR ERVK 0 585 144 2 855 2874 164 50 22 chr4 35500762 35501317 -120128803 - L1VL4 LINE L1 -5726 576 6 3 855 332 309 171 31 chr4 35501886 35502143 -120127977 + MLT1E3 LTR MaLR 327 619 -5 1 855 351 0 0 0 chr4 35502231 35502270 -120127850 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 855 180 0 0 0 chr4 35502270 35502289 -120127831 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 855 192 77 0 0 chr4 35502323 35502349 -120127771 + (T)n Simple_repeat Simple_repeat 1 26 0 6 855 889 147 60 15 chr4 35502375 35502575 -120127545 - Lx LINE L1 0 6654 6446 7 855 210 213 148 74 chr4 35502857 35502938 -120127182 + L2c LINE L2 3286 3372 -15 8 855 195 237 147 21 chr4 35503575 35503670 -120126450 - MIRb SINE MIR -96 172 66 9 855 1686 168 95 15 chr4 35503691 35504017 -120126103 - ORR1B1 LTR MaLR -2 392 41 1 855 328 196 0 0 chr4 35504037 35504093 -120126027 + ID_B1 SINE B4 165 220 -4 1 855 186 43 0 0 chr4 35504628 35504651 -120125469 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 855 6877 191 40 70 chr4 35505303 35506871 -120123249 + Lx6 LINE L1 5245 6734 -726 1 855 233 29 0 29 chr4 35506871 35506906 -120123214 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 855 6877 225 28 55 chr4 35506906 35507619 -120122501 + Lx6 LINE L1 6735 7460 0 1 855 1305 146 98 0 chr4 35507789 35508084 -120122036 + Lx9 LINE L1 7321 7644 0 1 855 991 292 86 30 chr4 35508896 35509376 -120120744 - MER74A LTR ERVL -2 556 2 1 855 197 311 53 13 chr4 35509593 35509668 -120120452 + MIRm SINE MIR 84 161 -115 1 855 223 256 0 0 chr4 35511171 35511249 -120118871 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 855 1174 205 81 84 chr4 35511563 35511946 -120118174 + ORR1C2 LTR MaLR 3 384 0 1 855 1015 237 39 184 chr4 35512484 35512617 -120117503 - ORR1D1 LTR MaLR -1 373 230 2 855 399 41 0 0 chr4 35512617 35512666 -120117454 + (CAGG)n Simple_repeat Simple_repeat 2 50 0 2 855 1015 237 39 184 chr4 35512666 35512966 -120117154 - ORR1D1 LTR MaLR -145 229 4 2 855 519 327 91 2 chr4 35513072 35513380 -120116740 - MER58B DNA MER1_type 0 341 6 2 855 193 62 62 0 chr4 35515805 35515837 -120114283 + L3 LINE CR1 1124 1157 -3332 2 855 227 321 24 12 chr4 35516148 35516230 -120113890 + B4 SINE B4 1 83 -209 2 855 299 369 23 78 chr4 35517242 35517498 -120112622 - L2c LINE L2 -8 3379 3138 2 855 222 262 27 36 chr4 35517834 35517945 -120112175 + GA-rich Low_complexity Low_complexity 3 112 0 2 855 214 316 98 49 chr4 35518548 35518671 -120111449 - L2b LINE L2 -17 3358 3230 2 855 743 330 145 33 chr4 35519595 35520084 -120110036 + Arthur1 DNA Tip100 4 547 -3400 2 855 275 255 115 60 chr4 35520108 35520199 -120109921 + Arthur1 DNA Tip100 3477 3569 -378 2 855 954 193 78 5 chr4 35520199 35520392 -120109728 + B3 SINE B2 4 210 -6 2 855 275 255 115 60 chr4 35520392 35520500 -120109620 + Arthur1 DNA Tip100 3570 3687 -260 2 106 621 180 30 38 chr4 35520509 35520642 -120109478 + B1F SINE Alu 9 140 -9 3 856 612 306 0 12 chr4 35520869 35521031 -120109089 - RSINE1 SINE B4 -2 163 4 3 856 246 136 0 0 chr4 35521594 35521638 -120108482 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 856 315 258 108 43 chr4 35522076 35522169 -120107951 - PB1D10 SINE Alu 0 117 19 3 856 436 326 47 27 chr4 35523267 35523415 -120106705 - ID_B1 SINE B4 -25 199 49 3 856 318 26 0 0 chr4 35523709 35523748 -120106372 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 856 27 0 0 0 chr4 35524406 35524433 -120105687 + AT_rich Low_complexity Low_complexity 1 27 0 3 856 249 275 127 78 chr4 35524707 35524849 -120105271 - MLT1A0 LTR MaLR 0 365 217 3 856 617 257 35 110 chr4 35525257 35525567 -120104553 - RLTR9A LTR ERVK 0 368 82 3 856 1366 155 161 7 chr4 35525827 35526100 -120104020 - RLTR41 LTR ERV1 0 446 132 3 856 727 264 42 14 chr4 35526438 35526653 -120103467 + LTRIS4 LTR ERV1 285 505 -2 4 856 1288 244 43 37 chr4 35526656 35527154 -120102966 - RMER15 LTR ERVL -87 488 22 4 856 2370 174 37 19 chr4 35527454 35527969 -120102151 + RLTR28 LTR ERVL 1 524 0 4 856 1669 163 14 84 chr4 35528095 35528536 -120101584 - RMER17C LTR ERVK 0 410 1 4 856 707 149 21 16 chr4 35529090 35529223 -120100897 - ORR1A4 LTR MaLR -8 411 209 4 856 12362 50 5 19 chr4 35529223 35530954 -120099166 + MMETn-int LTR ERVK 1434 3141 -1703 4 856 5734 139 10 18 chr4 35530988 35532019 -120098101 + MMETn-int LTR ERVK 3486 4507 -337 4 856 228 214 146 48 chr4 35532019 35532122 -120097998 + RLTR13B4 LTR ERVK 160 272 -531 4 856 1236 147 8 16 chr4 35532123 35532365 -120097755 + MMETn-int LTR ERVK 4605 4844 0 4 856 2117 92 19 25 chr4 35532365 35532689 -120097431 + RLTRETN_Mm LTR ERVK 1 322 0 4 856 4394 151 9 6 chr4 35532689 35533484 -120096636 - L1_Mm LINE L1 -776 5107 4311 4 856 6694 133 7 3 chr4 35533489 35534909 -120095211 + Lx LINE L1 5228 6654 0 4 856 706 138 26 86 chr4 35534917 35535068 -120095052 - ORR1A4 LTR MaLR -187 142 1 4 856 516 105 0 0 chr4 35536714 35536790 -120093330 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 856 322 227 43 43 chr4 35536833 35536925 -120093195 - MLT2B2 LTR ERVL 0 562 471 5 856 1040 306 107 11 chr4 35536991 35537338 -120092782 - MTD LTR MaLR -14 405 26 5 856 1260 274 77 3 chr4 35537371 35537759 -120092361 - MTD LTR MaLR 0 419 3 5 856 845 291 164 15 chr4 35537760 35538022 -120092098 - ORR1E LTR MaLR -58 301 1 5 856 354 340 151 13 chr4 35538028 35538180 -120091940 - MLT2B2 LTR ERVL -87 428 256 5 856 765 285 39 0 chr4 35539966 35540173 -120089947 + B3 SINE B2 1 215 -1 5 856 225 0 0 0 chr4 35540530 35540555 -120089565 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 856 378 0 0 0 chr4 35540555 35540596 -120089524 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 856 25 0 0 0 chr4 35540866 35540891 -120089229 + AT_rich Low_complexity Low_complexity 1 25 0 5 856 1199 189 4 4 chr4 35540976 35541204 -120088916 - Lx6 LINE L1 -810 6650 6423 5 856 230 328 22 59 chr4 35541832 35541968 -120088152 + MER5B DNA MER1_type 4 134 -44 5 856 2596 179 12 24 chr4 35542210 35542715 -120087405 - Lx5 LINE L1 -235 6815 6317 6 856 586 55 11 11 chr4 35543614 35543706 -120086414 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 6 856 2130 160 76 19 chr4 35543738 35544159 -120085961 - Lx2B LINE L1 -63 6937 6493 6 856 494 330 9 35 chr4 35544658 35544887 -120085233 - ID_B1 SINE B4 -1 223 1 6 856 895 227 84 20 chr4 35544901 35545103 -120085017 - B3 SINE B2 0 216 2 6 856 24 85 0 0 chr4 35545114 35545173 -120084947 + AT_rich Low_complexity Low_complexity 1 59 0 6 856 33636 48 1 3 chr4 35545441 35550827 -120079293 + L1Md_T LINE L1 121 5589 -297 6 856 8360 38 0 0 chr4 35550827 35551823 -120078297 + L1Md_T LINE L1 5590 6585 0 6 856 188 67 33 0 chr4 35552037 35552067 -120078053 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 6 856 387 0 0 0 chr4 35552111 35552154 -120077966 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 6 856 3228 29 39 0 chr4 35553758 35554139 -120075981 + MTA_Mm LTR MaLR 1 396 0 6 856 22 35 0 0 chr4 35554279 35554308 -120075812 + AT_rich Low_complexity Low_complexity 1 29 0 7 856 357 24 0 0 chr4 35554329 35554371 -120075749 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 856 784 265 23 12 chr4 35554381 35554553 -120075567 - B3A SINE B2 -24 174 1 7 856 337 366 9 9 chr4 35554576 35554689 -120075431 - PB1D10 SINE Alu -2 115 3 7 856 2062 150 151 72 chr4 35555383 35555894 -120074226 - RMER4B LTR ERVK -34 551 1 7 856 279 79 0 0 chr4 35556707 35556745 -120073375 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 856 388 328 9 0 chr4 35557312 35557428 -120072692 + PB1D10 SINE Alu 1 117 0 7 856 203 304 0 0 chr4 35557747 35557803 -120072317 + L2c LINE L2 3320 3375 -12 7 856 537 30 0 0 chr4 35558588 35558655 -120071465 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 7 856 597 313 13 13 chr4 35558656 35558808 -120071312 - RSINE1 SINE B4 -6 159 8 7 856 373 303 0 0 chr4 35558823 35558899 -120071221 - ID4 SINE ID 0 83 8 8 856 4442 128 20 29 chr4 35559050 35559947 -120070173 + L1VL4 LINE L1 355 1233 -2326 8 856 243 0 0 0 chr4 35559947 35559974 -120070146 + (GA)n Simple_repeat Simple_repeat 2 28 0 8 856 4442 105 31 3 chr4 35559974 35560338 -120069782 + L1VL4 LINE L1 1234 1613 -1946 8 856 34376 47 8 4 chr4 35560335 35565573 -120064547 + L1Md_T LINE L1 365 5586 -297 8 856 8309 40 1 0 chr4 35565573 35566567 -120063553 + L1Md_T LINE L1 5587 6581 -1 8 856 831 19 0 0 chr4 35566567 35566673 -120063447 - L1Md_A LINE L1 -1957 3926 3821 8 856 18417 40 2 2 chr4 35566670 35569798 -120060322 - L1Md_A LINE L1 -2307 3576 490 8 856 4245 89 30 4 chr4 35569797 35570486 -120059634 - MusHAL1 LINE L1 -1418 1294 588 8 856 1456 188 20 10 chr4 35570486 35570782 -120059338 + Lx LINE L1 6353 6651 -3 8 856 243 282 264 39 chr4 35570942 35571252 -120058868 - Charlie2b DNA MER1_type -624 2158 1779 8 856 337 254 112 96 chr4 35571743 35571983 -120058137 - MLT1C LTR MaLR -221 246 3 8 856 1115 82 0 6 chr4 35573085 35573244 -120056876 + Lx2 LINE L1 6619 6776 -221 8 856 4538 72 3 7 chr4 35573655 35574254 -120055866 - L1Md_F2 LINE L1 -1 6581 5985 9 856 33718 45 0 3 chr4 35574254 35579508 -120050612 + L1Md_T LINE L1 257 5589 -297 9 856 8541 29 0 0 chr4 35579508 35580503 -120049617 + L1Md_T LINE L1 5590 6584 -1 9 856 2967 118 4 0 chr4 35580506 35580964 -120049156 - L1_Mm LINE L1 -198 5685 5226 9 856 5585 147 12 15 chr4 35580957 35582576 -120047544 - L1VL4 LINE L1 -1791 2026 514 9 856 2410 166 33 4 chr4 35582607 35583062 -120047058 - Lx5 LINE L1 -117 5760 5293 9 856 4857 198 53 9 chr4 35583064 35584084 -120046036 + Lx5 LINE L1 5769 6833 -217 9 856 3077 79 2 0 chr4 35584212 35584616 -120045504 - L1_Mus1 LINE L1 -1 6566 6162 9 856 1551 88 0 0 chr4 35584617 35584832 -120045288 + L1_Mus1 LINE L1 5975 6189 -378 9 856 204 40 0 0 chr4 35585058 35585083 -120045037 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 856 447 293 119 18 chr4 35585094 35585630 -120044490 - L1M5 LINE L1 -621 5619 5040 9 856 243 0 0 0 chr4 35586317 35586344 -120043776 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 856 198 0 0 0 chr4 35586344 35586365 -120043755 + (GA)n Simple_repeat Simple_repeat 1 22 0 9 856 253 290 43 0 chr4 35586395 35586464 -120043656 - MTEa LTR MaLR -307 72 1 1 856 21 95 0 0 chr4 35586595 35586658 -120043462 + AT_rich Low_complexity Low_complexity 1 63 0 1 856 242 349 36 45 chr4 35586789 35586900 -120043220 + PB1D9 SINE Alu 2 111 -9 1 856 1353 51 0 0 chr4 35586901 35587176 -120042944 + (GAAA)n Simple_repeat Simple_repeat 1 275 0 1 856 192 125 0 0 chr4 35588084 35588116 -120042004 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 856 188 328 28 76 chr4 35589156 35589301 -120040819 + MIRb SINE MIR 81 218 -50 1 856 228 35 0 0 chr4 35589777 35589806 -120040314 + (T)n Simple_repeat Simple_repeat 1 29 0 1 856 27305 22 0 1 chr4 35589809 35593898 -120036222 - L1Md_T LINE L1 0 6582 2498 1 856 823 170 15 15 chr4 35593898 35594035 -120036085 + B1_Mur4 SINE Alu 10 146 -4 1 856 848 95 40 0 chr4 35594345 35594493 -120035627 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 1 856 835 138 6 12 chr4 35594495 35594657 -120035463 + CT-rich Low_complexity Low_complexity 1 161 0 1 856 588 125 156 0 chr4 35594749 35594877 -120035243 + Lx3C LINE L1 6827 6974 -2 1 856 297 0 0 0 chr4 35594941 35594974 -120035146 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 856 581 225 6 22 chr4 35595367 35595549 -120034571 - Lx9 LINE L1 -8 7636 7458 1 856 213 193 60 0 chr4 35595549 35595632 -120034488 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 1 856 962 94 0 0 chr4 35596276 35596403 -120033717 + B1_Mus1 SINE Alu 20 146 -2 1 856 369 0 0 0 chr4 35596403 35596444 -120033676 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 856 236 324 14 0 chr4 35596664 35596735 -120033385 + ID4_ SINE ID 1 72 -11 1 856 284 219 16 0 chr4 35596994 35597058 -120033062 - Lx7 LINE L1 -449 7247 7183 1 856 375 387 84 43 chr4 35597248 35597640 -120032480 + MLT1I LTR MaLR 1 408 -3 1 856 21 36 0 0 chr4 35597677 35597705 -120032415 + AT_rich Low_complexity Low_complexity 1 28 0 1 856 350 273 65 52 chr4 35597708 35597998 -120032122 - Lx7 LINE L1 -2 7694 7401 1 856 1276 93 73 5 chr4 35598002 35598208 -120031912 + L1_Mus3 LINE L1 6413 6632 -6 1 856 996 242 50 38 chr4 35598224 35598486 -120031634 + Lx5 LINE L1 6786 7050 0 1 856 3282 209 121 0 chr4 35598529 35599434 -120030686 - Lx7 LINE L1 -333 7363 6350 1 856 558 0 0 0 chr4 35599435 35599497 -120030623 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 856 5430 195 83 20 chr4 35599522 35601057 -120029063 - Lx7 LINE L1 -1539 6157 4527 1 856 245 244 22 0 chr4 35601516 35601606 -120028514 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 1 856 288 0 0 0 chr4 35601928 35601960 -120028160 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 856 4475 54 5 9 chr4 35602038 35602617 -120027503 - L1Md_F3 LINE L1 -3 6581 6005 1 856 37381 31 3 6 chr4 35602636 35608806 -120021314 - L1Md_A LINE L1 0 6582 437 1 856 13456 48 20 2 chr4 35608803 35610742 -120019378 - L1Md_F3 LINE L1 -566 6018 4039 1 856 1159 48 7 14 chr4 35610753 35610901 -120019219 - B1_Mm SINE Alu 0 147 1 1 856 297 240 92 7 chr4 35610922 35611104 -120019016 - L1M2 LINE L1 -441 5859 5662 1 856 25 0 0 0 chr4 35611233 35611258 -120018862 + AT_rich Low_complexity Low_complexity 1 25 0 1 856 1094 246 73 28 chr4 35611381 35611736 -120018384 - Lx9 LINE L1 -153 7491 7121 1 856 1712 266 88 38 chr4 35611765 35612424 -120017696 - Lx9 LINE L1 -595 7049 6358 1 856 509 294 3 122 chr4 35612434 35612818 -120017302 - L1_Mur3 LINE L1 -1319 4561 4224 1 856 426 285 49 0 chr4 35612954 35613077 -120017043 + Lx8 LINE L1 7086 7214 -259 1 856 595 235 91 29 chr4 35613119 35613329 -120016791 - L1MC LINE L1 -2136 4010 3788 1 856 466 265 170 10 chr4 35613345 35613657 -120016463 - L1MC LINE L1 -2488 3658 3297 1 856 1943 128 69 0 chr4 35614083 35614388 -120015732 + ORR1A3 LTR MaLR 1 326 0 1 856 324 0 0 0 chr4 35614454 35614490 -120015630 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 856 21 0 0 0 chr4 35615005 35615026 -120015094 + AT_rich Low_complexity Low_complexity 1 21 0 1 856 306 20 20 0 chr4 35615084 35615134 -120014986 - L1Md_F3 LINE L1 -3 6581 6531 1 856 409 360 65 110 chr4 35616113 35616313 -120013807 + B3A SINE B2 1 191 -7 1 856 228 67 0 0 chr4 35616314 35616344 -120013776 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 1 856 284 273 0 0 chr4 35616532 35616598 -120013522 + ID4_ SINE ID 5 70 -13 1 856 455 48 16 0 chr4 35617783 35617845 -120012275 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1 856 210 294 0 0 chr4 35617854 35617905 -120012215 + B3 SINE B2 4 54 -162 1 856 330 125 15 15 chr4 35617949 35618014 -120012106 - Lx2 LINE L1 -6 6991 6927 1 856 753 255 19 0 chr4 35618015 35618172 -120011948 + B3 SINE B2 57 216 0 1 856 496 333 56 37 chr4 35618187 35618349 -120011771 - B3A SINE B2 -30 168 4 1 856 547 219 141 6 chr4 35618649 35618805 -120011315 - ORR1D2 LTR MaLR -1 369 193 1 856 1851 153 278 50 chr4 35618805 35618934 -120011186 - Lx2 LINE L1 -4 6632 6528 1 856 4278 126 88 94 chr4 35618934 35619846 -120010274 + RMER17A2 LTR ERVK 1 906 0 1 856 2049 118 63 31 chr4 35619846 35620250 -120009870 - Lx2 LINE L1 -351 6646 6024 1 856 746 280 40 58 chr4 35620250 35620474 -120009646 - ORR1D2 LTR MaLR -147 223 4 1 856 497 297 113 15 chr4 35620595 35620930 -120009190 - L1ME2z LINE L1 0 6444 6077 1 856 661 22 33 0 chr4 35620941 35621031 -120009089 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 1 856 287 267 179 18 chr4 35621204 35621372 -120008748 - L1ME2z LINE L1 -380 6064 5870 1 856 405 0 0 0 chr4 35621557 35621602 -120008518 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 856 333 328 55 74 chr4 35621869 35622743 -120007377 - L1ME2z LINE L1 -1255 4891 4035 1 856 21 36 0 0 chr4 35622765 35622793 -120007327 + AT_rich Low_complexity Low_complexity 1 28 0 1 856 421 305 51 33 chr4 35622872 35623080 -120007040 - L1ME2z LINE L1 -2221 3925 3713 1 856 282 106 0 0 chr4 35623214 35623261 -120006859 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 856 633 333 59 8 chr4 35623316 35623570 -120006550 - B4A SINE B4 0 292 26 1 856 1694 197 61 3 chr4 35624380 35624757 -120005363 - Lx9 LINE L1 -646 6998 6600 1 856 260 27 27 0 chr4 35626205 35626242 -120003878 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1 856 687 284 31 93 chr4 35626245 35626418 -120003702 + B3 SINE B2 5 164 -52 1 856 4813 106 6 88 chr4 35626418 35627298 -120002822 - RMER17D2 LTR ERVK -1 808 1 1 856 687 284 31 93 chr4 35627298 35627349 -120002771 + B3 SINE B2 165 215 -1 1 856 1778 168 45 4 chr4 35627347 35627672 -120002448 + ORR1A2 LTR MaLR 13 368 -10 1 856 3948 68 19 2 chr4 35628939 35629455 -120000665 - L1Md_F2 LINE L1 -1 6581 6057 1 856 335 262 0 0 chr4 35629534 35629618 -120000502 - Lx9 LINE L1 -356 7288 7205 1 856 21 71 0 0 chr4 35629686 35629728 -120000392 + AT_rich Low_complexity Low_complexity 1 42 0 1 856 438 20 0 0 chr4 35629737 35629788 -120000332 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 856 237 382 62 47 chr4 35629813 35629942 -120000178 - RSINE1 SINE B4 -14 151 21 1 856 497 314 6 38 chr4 35630005 35630164 -119999956 - RSINE1 SINE B4 0 165 12 1 856 435 19 0 0 chr4 35631128 35631180 -119998940 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 856 239 336 62 62 chr4 35631535 35631681 -119998439 + MTEb-int LTR MaLR 856 1001 -579 1 856 3011 164 82 16 chr4 35631684 35632246 -119997874 - RMER19C LTR ERVK -12 599 1 1 856 2224 258 31 27 chr4 35632246 35632832 -119997288 + MTEb-int LTR MaLR 991 1578 -2 1 856 803 293 64 95 chr4 35632834 35633223 -119996897 + MTEb LTR MaLR 1 377 -2 1 856 919 134 42 0 chr4 35633678 35633820 -119996300 + RMER6C LTR ERVK 1 148 -542 1 856 520 121 0 35 chr4 35633844 35633930 -119996190 + RMER17D2 LTR ERVK 725 807 -2 1 856 1900 101 40 4 chr4 35633931 35634193 -119995927 + Lx2 LINE L1 6710 6970 -27 1 856 360 0 0 0 chr4 35634193 35634233 -119995887 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 856 1900 101 40 4 chr4 35634233 35634248 -119995872 + Lx2 LINE L1 6971 6995 -2 1 856 200 360 145 33 chr4 35634775 35635051 -119995069 + L2b LINE L2 2958 3264 -111 1 856 226 94 0 0 chr4 35635527 35635559 -119994561 - MTD LTR MaLR -185 234 203 1 856 3789 52 98 0 chr4 35635559 35636058 -119994062 - L1Md_F2 LINE L1 -2 6580 6033 1 856 652 78 11 0 chr4 35636058 35636148 -119993972 + L1Md_F LINE L1 593 683 -5836 1 856 307 363 135 13 chr4 35637770 35638007 -119992113 + L2a LINE L2 2817 3082 -337 1 856 325 338 41 60 chr4 35638050 35638277 -119991843 + L2a LINE L2 3183 3426 0 1 856 416 372 43 17 chr4 35638608 35638838 -119991282 + L1MC LINE L1 5584 5819 -2063 1 856 27 29 0 0 chr4 35640198 35640232 -119989888 + AT_rich Low_complexity Low_complexity 1 34 0 1 856 925 197 51 0 chr4 35640432 35640610 -119989510 + URR1A DNA MER1_type 40 226 0 1 856 278 0 0 51 chr4 35641918 35641957 -119988163 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 1 856 256 146 21 0 chr4 35642196 35642244 -119987876 - ORR1C1 LTR MaLR 0 378 330 1 856 677 328 71 57 chr4 35642562 35642928 -119987192 + MTEa LTR MaLR 1 371 -8 1 856 466 238 55 39 chr4 35643029 35643234 -119986886 + MLT1A LTR MaLR 183 379 -11 1 856 712 286 68 42 chr4 35643338 35643575 -119986545 - B4A SINE B4 0 292 50 1 856 294 281 148 22 chr4 35644704 35644936 -119985184 - MIRb SINE MIR -9 259 1 1 856 687 108 0 0 chr4 35645939 35646041 -119984079 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 856 648 0 0 0 chr4 35649532 35649604 -119980516 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 856 501 235 29 14 chr4 35649934 35650072 -119980048 + Tigger7 DNA MER2_type 2285 2424 -67 1 856 23 33 0 0 chr4 35650469 35650499 -119979621 + AT_rich Low_complexity Low_complexity 1 30 0 1 856 235 49 0 47 chr4 35651014 35651057 -119979063 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 1 857 243 0 0 0 chr4 35651868 35651895 -119978225 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1 857 228 67 0 0 chr4 35653059 35653089 -119977031 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 857 279 0 0 0 chr4 35653092 35653123 -119976997 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 857 21 36 0 0 chr4 35653307 35653335 -119976785 + AT_rich Low_complexity Low_complexity 1 28 0 1 857 324 83 0 0 chr4 35653398 35653446 -119976674 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 857 205 161 0 0 chr4 35653869 35653900 -119976220 + T-rich Low_complexity Low_complexity 5 35 0 1 857 191 359 26 0 chr4 35657394 35657472 -119972648 + MIR SINE MIR 71 150 -112 1 857 1166 236 104 39 chr4 35657481 35657895 -119972225 - RMER10A LTR ERVL -1 441 1 2 857 21 71 0 0 chr4 35658199 35658241 -119971879 + AT_rich Low_complexity Low_complexity 1 42 0 2 857 868 147 34 128 chr4 35658940 35659202 -119970918 + Lx3B LINE L1 6759 6999 -1 2 857 3001 26 0 0 chr4 35659247 35659594 -119970526 + L1Md_F3 LINE L1 6221 6567 -17 2 857 46 19 0 0 chr4 35659594 35659647 -119970473 + AT_rich Low_complexity Low_complexity 1 53 0 2 857 471 18 0 0 chr4 35660427 35660483 -119969637 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 857 22 0 0 0 chr4 35660843 35660865 -119969255 + AT_rich Low_complexity Low_complexity 1 22 0 2 857 321 335 98 44 chr4 35660865 35661068 -119969052 + L1M5 LINE L1 5602 5815 -309 2 857 463 250 159 43 chr4 35661227 35661696 -119968424 - L1MEf LINE L1 -951 5493 4967 2 857 225 300 34 60 chr4 35661733 35661850 -119968270 - RMER1C Other Other -665 677 564 2 857 654 233 60 0 chr4 35662438 35662571 -119967549 + B1_Mm SINE Alu 1 141 -6 2 857 25 51 0 0 chr4 35662575 35662614 -119967506 + AT_rich Low_complexity Low_complexity 1 39 0 2 857 422 275 183 17 chr4 35663305 35663545 -119966575 - L1MEf LINE L1 -4075 2167 1888 2 857 298 361 145 31 chr4 35663918 35664401 -119965719 - L2 LINE L2 -340 3079 2542 2 857 618 250 158 6 chr4 35664535 35664578 -119965542 + Lx9 LINE L1 7273 7316 -328 2 857 240 86 0 0 chr4 35664578 35664613 -119965507 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 857 618 250 158 6 chr4 35664613 35664891 -119965229 + Lx9 LINE L1 7317 7642 -2 2 857 344 252 107 0 chr4 35665321 35665424 -119964696 - PB1D10 SINE Alu -2 115 2 2 857 846 289 108 58 chr4 35665490 35666492 -119963628 + L1MA5 LINE L1 4811 5915 -385 2 857 213 170 0 36 chr4 35666679 35666734 -119963386 + A-rich Low_complexity Low_complexity 4 56 0 2 857 330 359 80 5 chr4 35668533 35668732 -119961388 - LTR78 LTR ERV1 -429 875 662 2 857 270 211 71 40 chr4 35669302 35669401 -119960719 - PB1D9 SINE Alu 0 120 19 2 857 342 202 54 33 chr4 35670596 35670688 -119959432 - MLT1J1 LTR MaLR -9 435 342 2 857 230 304 64 21 chr4 35670780 35670874 -119959246 - MLT1J2 LTR MaLR -316 132 35 2 857 2169 94 13 13 chr4 35670874 35671188 -119958932 + Lx LINE L1 6341 6654 0 2 857 211 365 146 0 chr4 35672178 35672274 -119957846 - L2b LINE L2 -10 3365 3256 2 857 6857 86 7 7 chr4 35672523 35673482 -119956638 + RLTR13D2 LTR ERVK 1 959 -64 2 857 383 253 33 0 chr4 35673548 35673639 -119956481 + PB1D10 SINE Alu 24 117 0 2 857 1458 103 0 49 chr4 35673869 35674114 -119956006 - L1Md_F2 LINE L1 -11 6571 6339 2 857 372 192 30 0 chr4 35674181 35674280 -119955840 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 857 1066 200 14 14 chr4 35676482 35676705 -119953415 - URR1B DNA MER1_type -2 223 1 2 857 546 288 136 31 chr4 35678915 35679355 -119950765 + MLT2B2 LTR ERVL 1 551 -4 2 857 4947 70 0 0 chr4 35679590 35680229 -119949891 - L1Md_T LINE L1 -1 6581 5943 2 857 30 59 0 0 chr4 35680470 35680521 -119949599 + AT_rich Low_complexity Low_complexity 1 51 0 2 857 3284 189 22 26 chr4 35680946 35681637 -119948483 + L1_Mur2 LINE L1 4911 5598 -279 2 857 1748 271 179 12 chr4 35681636 35682275 -119947845 + Lx5 LINE L1 6456 7251 -209 2 857 1020 234 14 21 chr4 35682315 35682599 -119947521 + L1_Rod LINE L1 4942 5223 -624 2 857 1545 259 76 28 chr4 35682626 35683193 -119946927 + Lx9 LINE L1 6952 7545 -99 2 857 2600 113 296 12 chr4 35683191 35683684 -119946436 + Lx2 LINE L1 6359 6991 -6 2 857 1252 332 48 14 chr4 35684775 35685294 -119944826 + Lx8 LINE L1 6419 6955 -518 2 857 7720 92 62 6 chr4 35685310 35687290 -119942830 - L1VL2 LINE L1 -1561 2137 92 2 857 285 374 56 12 chr4 35687280 35687440 -119942680 + Lx8 LINE L1 7039 7205 -268 2 857 375 283 152 22 chr4 35687913 35688144 -119941976 + L1MA6 LINE L1 81 341 -6689 2 857 338 233 169 42 chr4 35688970 35689169 -119940951 + L1MA6 LINE L1 3541 3796 -3307 2 857 2082 153 35 24 chr4 35689169 35689543 -119940577 + Lx2B LINE L1 6618 6995 -5 2 857 331 256 201 82 chr4 35689543 35689637 -119940483 + L1MA6 LINE L1 3797 3869 -3234 2 857 236 282 27 27 chr4 35689839 35689912 -119940208 + B3 SINE B2 141 213 -3 2 857 907 309 132 16 chr4 35689983 35690750 -119939370 + L1MA6 LINE L1 4099 4954 -2146 2 857 476 292 120 17 chr4 35690763 35691299 -119938821 + L1MA6 LINE L1 6624 7228 -32 2 857 180 209 68 82 chr4 35692754 35692827 -119937293 + L3b LINE CR1 184 255 -227 2 857 264 310 31 0 chr4 35692906 35693009 -119937111 + MIR SINE MIR 55 167 -101 2 857 594 0 0 0 chr4 35693578 35693644 -119936476 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 857 200 254 40 40 chr4 35693827 35693901 -119936219 - MIRb SINE MIR -77 191 118 2 857 951 303 107 3 chr4 35695613 35695941 -119934179 + MLT1A0 LTR MaLR 2 363 -2 2 857 1351 262 113 22 chr4 35696114 35696528 -119933592 + Lx8 LINE L1 6852 7303 -170 2 857 537 16 0 0 chr4 35696552 35696614 -119933506 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 857 208 244 60 60 chr4 35696776 35696859 -119933261 - MIRb SINE MIR -5 263 181 2 857 216 148 37 0 chr4 35696860 35696914 -119933206 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 2 857 257 316 13 0 chr4 35697315 35697394 -119932726 - PB1 SINE Alu -36 91 12 2 857 814 315 18 35 chr4 35697429 35697712 -119932408 + Lx8 LINE L1 7036 7313 -160 2 857 909 188 52 5 chr4 35697865 35698058 -119932062 - Lx4A LINE L1 -12 7046 6845 2 857 5434 113 14 4 chr4 35698326 35699126 -119930994 + Lx LINE L1 5847 6654 0 2 857 21 71 0 0 chr4 35700644 35700686 -119929434 + AT_rich Low_complexity Low_complexity 1 42 0 2 857 307 312 138 38 chr4 35701668 35701828 -119928292 - MIR SINE MIR -22 240 65 2 857 790 323 83 63 chr4 35701862 35702275 -119927845 + L1MA4A LINE L1 4633 5094 -1049 2 857 4750 52 29 16 chr4 35702275 35702895 -119927225 + L1Md_F2 LINE L1 5954 6581 -1 2 857 885 316 86 71 chr4 35702895 35703274 -119926846 + L1MA4A LINE L1 5033 5497 -806 2 857 198 0 0 0 chr4 35703274 35703296 -119926824 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 857 885 303 88 83 chr4 35703296 35703763 -119926357 + L1MA4A LINE L1 5498 5930 -373 2 857 196 266 179 2 chr4 35705385 35705478 -119924642 - MIRb SINE MIR -101 161 56 2 857 665 271 64 20 chr4 35705638 35705841 -119924279 + B3 SINE B2 5 216 0 2 857 237 338 71 53 chr4 35706406 35706631 -119923489 + MIRb SINE MIR 22 250 -18 2 857 183 324 26 26 chr4 35707546 35707622 -119922498 - MIRb SINE MIR -175 93 18 2 857 405 0 0 0 chr4 35708081 35708126 -119921994 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 857 206 194 16 0 chr4 35708135 35708197 -119921923 + GA-rich Low_complexity Low_complexity 2 64 0 2 857 2644 198 71 17 chr4 35709714 35710249 -119919871 - Lx5 LINE L1 0 7050 6487 2 857 1199 54 0 0 chr4 35710763 35710911 -119919209 + B1_Mus1 SINE Alu 1 148 0 2 857 556 97 0 34 chr4 35711211 35711328 -119918792 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 2 857 306 0 0 0 chr4 35711748 35711782 -119918338 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 857 605 88 10 0 chr4 35711782 35711884 -119918236 + (GA)n Simple_repeat Simple_repeat 2 104 0 2 857 584 300 69 81 chr4 35712639 35712987 -119917133 + MLT1H1 LTR MaLR 65 408 -147 2 857 633 27 0 0 chr4 35713890 35713965 -119916155 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 857 1755 138 86 0 chr4 35714587 35714913 -119915207 + Lx3A LINE L1 6621 6974 -7 2 857 315 197 91 13 chr4 35715692 35715769 -119914351 - Charlie15a DNA MER1_type -31 193 111 2 857 852 252 8 103 chr4 35716135 35716369 -119913751 - B3 SINE B2 0 216 5 2 857 378 0 0 0 chr4 35716992 35717034 -119913086 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 857 734 226 0 0 chr4 35717963 35718109 -119912011 - B1_Mur2 SINE Alu -2 147 2 2 857 210 118 0 0 chr4 35720349 35720383 -119909737 + (A)n Simple_repeat Simple_repeat 1 34 0 2 857 255 307 52 9 chr4 35720988 35721103 -119909017 - MIRm SINE MIR -1 275 156 2 857 431 271 115 37 chr4 35721256 35721474 -119908646 + Lx8 LINE L1 7235 7469 -4 2 857 351 0 0 0 chr4 35722035 35722074 -119908046 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 857 252 0 0 0 chr4 35722074 35722102 -119908018 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 857 253 305 40 10 chr4 35722102 35722220 -119907900 - B2_Mm1t SINE B2 -72 121 1 2 857 587 356 32 46 chr4 35722445 35722725 -119907395 - B4 SINE B4 -16 276 1 2 857 38759 15 1 6 chr4 35722738 35728943 -119901177 - L1Md_A LINE L1 -1 6581 409 2 857 300 248 75 8 chr4 35729377 35729511 -119900609 + L1M4 LINE L1 4134 4276 -1864 2 857 418 254 185 0 chr4 35729649 35729838 -119900282 + L1M4 LINE L1 4613 4836 -1310 2 857 414 320 49 16 chr4 35729937 35730245 -119899875 + L1M4 LINE L1 5031 5348 -798 2 857 345 296 56 0 chr4 35730509 35730651 -119899469 + L1M4 LINE L1 5668 5817 -362 2 857 1972 181 5 19 chr4 35733974 35734346 -119895774 + ORR1B2 LTR MaLR 1 367 0 2 857 257 236 164 0 chr4 35734501 35734556 -119895564 + ID SINE ID 2 65 -159 2 857 527 301 108 81 chr4 35735087 35735489 -119894631 - MTE2a LTR MaLR 0 419 3 2 857 1354 146 9 5 chr4 35735563 35735783 -119894337 - URR1A DNA MER1_type 0 226 6 2 857 7007 77 5 7 chr4 35735904 35737126 -119892994 - L1_Mus1 LINE L1 0 6654 5354 2 857 9400 119 21 1 chr4 35737127 35739121 -119890999 - L1Md_F LINE L1 -3122 2761 725 2 857 344 254 57 8 chr4 35739129 35739252 -119890868 - L1Md_F LINE L1 -5813 803 675 2 857 404 238 52 30 chr4 35739333 35739467 -119890653 - L1VL1 LINE L1 -6065 357 221 2 857 911 269 80 52 chr4 35739748 35740521 -119889599 - L1MCb LINE L1 -3175 3389 2595 2 857 24 53 0 0 chr4 35740824 35740862 -119889258 + AT_rich Low_complexity Low_complexity 1 38 0 2 857 320 294 96 60 chr4 35741015 35741352 -119888768 - L1MCb LINE L1 -4641 2110 1745 2 857 816 281 28 14 chr4 35741352 35741565 -119888555 - ID_B1 SINE B4 -7 217 2 2 857 320 294 96 60 chr4 35741565 35741676 -119888444 - L1MCb LINE L1 -5007 1744 1646 2 857 216 0 0 0 chr4 35741680 35741704 -119888416 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 857 382 312 77 33 chr4 35741992 35742174 -119887946 - L1MCb LINE L1 -5503 1248 1059 2 857 514 217 7 7 chr4 35742182 35742257 -119887863 + polypyrimidine Low_complexity Low_complexity 66 140 0 2 857 558 0 0 0 chr4 35742257 35742319 -119887801 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 2 857 514 217 7 7 chr4 35742319 35742382 -119887738 + polypyrimidine Low_complexity Low_complexity 3 65 0 3 857 216 0 0 0 chr4 35742514 35742538 -119887582 + (T)n Simple_repeat Simple_repeat 1 24 0 3 857 402 399 60 60 chr4 35742655 35743138 -119886982 - L1MCb LINE L1 -5429 616 134 2 857 333 0 0 0 chr4 35743138 35743175 -119886945 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 857 189 277 181 0 chr4 35744928 35745011 -119885109 + L2 LINE L2 2789 2886 -533 3 857 3296 149 68 0 chr4 35745387 35745957 -119884163 + Lx2 LINE L1 6388 6996 -1 3 857 207 69 0 0 chr4 35746098 35746127 -119883993 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 3 857 244 337 135 0 chr4 35746151 35746240 -119883880 - MER5A DNA MER1_type -28 161 61 3 857 5927 38 0 0 chr4 35746259 35746963 -119883157 - L1Md_T LINE L1 0 6582 5879 3 857 2991 20 0 0 chr4 35746963 35747319 -119882801 + L1Md_T LINE L1 5528 5883 0 3 857 193 190 276 0 chr4 35747330 35747388 -119882732 - MER5A DNA MER1_type -113 76 3 3 857 304 243 204 0 chr4 35748016 35748119 -119882001 - MIRb SINE MIR -50 218 95 3 857 914 215 55 14 chr4 35748145 35748362 -119881758 + URR1A DNA MER1_type 1 226 0 3 857 201 258 30 15 chr4 35748626 35748693 -119881427 + MIR SINE MIR 65 132 -130 3 857 268 269 104 0 chr4 35748719 35748786 -119881334 + ID4 SINE ID 8 81 -2 3 857 180 380 54 0 chr4 35748927 35749019 -119881101 - L2a LINE L2 -9 3366 3270 3 857 213 315 41 0 chr4 35749856 35749929 -119880191 + MER5A DNA MER1_type 87 162 -27 3 857 193 295 124 40 chr4 35751817 35752018 -119878102 - L2a LINE L2 -177 3249 3032 3 857 266 244 39 0 chr4 35752404 35752482 -119877638 - B1F2 SINE Alu -21 128 48 3 857 630 284 71 27 chr4 35753174 35753398 -119876722 - MamRep434 DNA TcMar -130 296 63 3 857 369 0 0 0 chr4 35753491 35753532 -119876588 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 857 270 0 0 0 chr4 35753532 35753561 -119876559 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 857 471 117 32 0 chr4 35753637 35753731 -119876389 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 3 857 1038 176 26 21 chr4 35753731 35753763 -119876357 - B2_Mm1t SINE B2 0 193 161 3 857 1107 79 0 7 chr4 35753763 35753904 -119876216 - B1_Mus1 SINE Alu -7 141 2 3 857 1038 176 26 21 chr4 35753904 35754063 -119876057 - B2_Mm1t SINE B2 -33 160 1 3 857 369 0 0 0 chr4 35754125 35754166 -119875954 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 3 857 1017 95 95 0 chr4 35755512 35755670 -119874450 + L1_Mus1 LINE L1 6395 6567 0 3 857 13382 52 8 2 chr4 35755798 35757562 -119872558 + ORR1A0-int LTR MaLR 18 1792 0 3 857 2880 38 9 0 chr4 35757562 35757904 -119872216 + ORR1A0 LTR MaLR 1 345 -1 3 857 212 360 19 29 chr4 35758260 35758363 -119871757 + PB1D10 SINE Alu 1 102 -15 3 857 607 115 0 0 chr4 35758593 35758680 -119871440 + ORR1A1 LTR MaLR 260 346 0 3 857 521 302 92 36 chr4 35759368 35759610 -119870510 + B4 SINE B4 9 266 -26 3 857 357 82 0 0 chr4 35759610 35759659 -119870461 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3 857 504 0 0 0 chr4 35763371 35763427 -119866693 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 857 5170 223 58 11 chr4 35763430 35763964 -119866156 + Lx6 LINE L1 6182 6734 -726 3 857 180 0 0 0 chr4 35763964 35763984 -119866136 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 857 5170 223 58 11 chr4 35763984 35764667 -119865453 + Lx6 LINE L1 6735 7456 -4 3 857 214 370 65 7 chr4 35765028 35765183 -119864937 - MIR SINE MIR -82 180 17 3 857 951 255 0 0 chr4 35765596 35765800 -119864320 - B3 SINE B2 -11 205 2 3 857 315 0 0 0 chr4 35766196 35766231 -119863889 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 3 857 414 0 0 0 chr4 35766372 35766418 -119863702 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 857 423 128 0 0 chr4 35766418 35766504 -119863616 + (GA)n Simple_repeat Simple_repeat 2 87 0 3 857 203 200 0 62 chr4 35766505 35766569 -119863551 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 3 857 819 101 0 0 chr4 35767108 35767227 -119862893 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 3 857 255 278 122 10 chr4 35767500 35767598 -119862522 - PB1D10 SINE Alu -8 109 1 3 857 664 167 0 27 chr4 35767624 35767697 -119862423 + polypyrimidine Low_complexity Low_complexity 73 145 0 3 857 1045 123 6 6 chr4 35767697 35767877 -119862243 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 857 664 167 0 27 chr4 35767877 35767951 -119862169 + polypyrimidine Low_complexity Low_complexity 3 72 0 3 857 242 298 109 40 chr4 35768241 35768394 -119861726 - MIRb SINE MIR -86 182 14 3 857 624 91 0 0 chr4 35769094 35769182 -119860938 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 857 230 217 0 0 chr4 35769617 35769663 -119860457 + MIR SINE MIR 109 154 -108 3 857 213 216 0 0 chr4 35770962 35770999 -119859121 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 857 222 319 0 14 chr4 35770999 35771069 -119859051 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 857 4311 18 0 0 chr4 35771878 35772393 -119857727 + L1Md_A LINE L1 5072 5586 -297 3 857 8481 28 2 0 chr4 35772393 35773385 -119856735 + L1Md_A LINE L1 5587 6580 -2 3 857 280 268 233 61 chr4 35773529 35773692 -119856428 - B2_Mm2 SINE B2 -3 192 2 3 857 255 295 51 0 chr4 35774240 35774318 -119855802 + MamGypLTR2 LTR Gypsy 879 960 -229 3 857 481 292 23 18 chr4 35774330 35774501 -119855619 + GA-rich Low_complexity Low_complexity 1 172 0 3 857 1723 186 55 19 chr4 35774537 35774898 -119855222 + ORR1D1 LTR MaLR 1 374 0 3 857 23 33 0 0 chr4 35775076 35775106 -119855014 + AT_rich Low_complexity Low_complexity 1 30 0 3 857 180 0 0 0 chr4 35775209 35775229 -119854891 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 3 857 2412 81 55 3 chr4 35775304 35775650 -119854470 - L1_Mus2 LINE L1 0 6566 6203 3 857 181 324 29 29 chr4 35775694 35775764 -119854356 - L2c LINE L2 -9 3378 3309 3 857 339 262 218 35 chr4 35776304 35776561 -119853559 + Lx8 LINE L1 7165 7468 -5 3 857 21 0 0 0 chr4 35776563 35776584 -119853536 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 444 241 95 41 chr4 35776611 35776758 -119853362 - MER5A DNA MER1_type -1 188 34 3 857 21 0 0 0 chr4 35778015 35778036 -119852084 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 944 286 0 4 chr4 35778171 35778424 -119851696 - L1_Mur3 LINE L1 -640 5240 4989 3 857 299 273 26 0 chr4 35778443 35778520 -119851600 - L1_Mur3 LINE L1 -979 4901 4823 3 857 787 367 75 40 chr4 35778575 35778946 -119851174 + Lx8 LINE L1 6849 7229 -244 3 857 261 0 0 0 chr4 35778946 35778975 -119851145 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 857 787 367 75 40 chr4 35778975 35779177 -119850943 + Lx8 LINE L1 7230 7442 -31 3 857 288 333 93 0 chr4 35779242 35779350 -119850770 + Lx9 LINE L1 6699 6816 -828 3 857 594 228 12 36 chr4 35779349 35779517 -119850603 + Lx6 LINE L1 7297 7460 0 3 857 4407 192 117 6 chr4 35781014 35781922 -119848198 + RMER1B Other Other 47 1055 -11 3 857 213 271 48 144 chr4 35782318 35782443 -119847677 - PB1D10 SINE Alu 0 117 5 3 107 564 116 0 0 chr4 35782631 35782717 -119847403 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 858 1033 266 66 33 chr4 35782845 35783207 -119846913 + ORR1D1 LTR MaLR 1 374 0 3 858 604 292 22 0 chr4 35784882 35785019 -119845101 + RSINE1 SINE B4 1 140 -25 3 858 259 408 7 26 chr4 35785056 35785207 -119844913 - L2b LINE L2 -3 3372 3225 3 858 26 0 0 0 chr4 35785771 35785797 -119844323 + AT_rich Low_complexity Low_complexity 1 26 0 3 858 1367 25 8 0 chr4 35787072 35787313 -119842807 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 3 858 23 0 0 0 chr4 35787360 35787383 -119842737 + AT_rich Low_complexity Low_complexity 1 23 0 3 858 24 32 0 0 chr4 35788429 35788460 -119841660 + AT_rich Low_complexity Low_complexity 1 31 0 3 858 492 140 0 0 chr4 35789838 35789945 -119840175 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 3 858 295 194 16 0 chr4 35789948 35790010 -119840110 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 858 206 325 39 31 chr4 35790299 35790429 -119839691 + MIRb SINE MIR 110 240 -28 3 858 393 336 90 30 chr4 35790919 35791152 -119838968 - L1MB8 LINE L1 -5 6173 5927 3 858 207 308 46 109 chr4 35791499 35791658 -119838462 - MIRc SINE MIR -56 212 53 3 858 194 171 49 0 chr4 35793330 35793371 -119836749 + L2a LINE L2 3336 3378 -48 3 858 1811 148 147 27 chr4 35794995 35795363 -119834757 + RMER1B Other Other 652 1063 -3 3 858 1075 101 6 6 chr4 35795377 35795546 -119834574 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 3 858 5418 65 3 46 chr4 35795776 35796539 -119833581 + L1_Mus1 LINE L1 5838 6567 0 3 858 496 273 99 7 chr4 35796619 35796770 -119833350 - B3A SINE B2 -3 195 31 3 858 220 367 9 9 chr4 35796871 35796981 -119833139 - MIRc SINE MIR -66 202 93 3 858 341 270 39 93 chr4 35797325 35797529 -119832591 + B3A SINE B2 4 196 -2 3 858 448 371 27 101 chr4 35797564 35797900 -119832220 - MLT1A LTR MaLR -63 311 1 3 858 22 56 0 0 chr4 35799301 35799337 -119830783 + AT_rich Low_complexity Low_complexity 1 36 0 3 858 319 247 32 43 chr4 35800182 35800275 -119829845 + PB1D10 SINE Alu 26 117 0 3 858 6422 98 11 5 chr4 35800419 35802121 -119827999 - L1VL2 LINE L1 -1795 1820 108 3 858 1773 211 30 3 chr4 35802772 35803110 -119827010 - MTC LTR MaLR -74 347 1 3 858 2812 129 84 16 chr4 35803147 35803636 -119826484 + Lx3B LINE L1 6445 6966 -7 3 858 261 0 0 0 chr4 35803645 35803674 -119826446 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 858 241 242 0 29 chr4 35803682 35803750 -119826370 + GA-rich Low_complexity Low_complexity 2 67 0 3 858 397 289 152 13 chr4 35804293 35804444 -119825676 + B3 SINE B2 1 172 -44 3 858 333 0 0 0 chr4 35804444 35804481 -119825639 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 858 393 22 0 0 chr4 35804481 35804526 -119825594 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 858 222 116 0 0 chr4 35804922 35804965 -119825155 + (T)n Simple_repeat Simple_repeat 1 43 0 3 858 261 371 133 43 chr4 35805387 35806110 -119824010 + L2 LINE L2 2227 3014 -405 3 858 224 100 0 24 chr4 35806171 35806212 -119823908 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 4 858 413 265 31 0 chr4 35806325 35806423 -119823697 - U6 snRNA snRNA -6 101 1 4 858 456 261 235 0 chr4 35806945 35807098 -119823022 - MER20 DNA MER1_type -1 218 30 4 858 234 0 0 0 chr4 35809395 35809421 -119820699 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 858 252 0 0 0 chr4 35809425 35809453 -119820667 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 858 269 125 0 40 chr4 35809990 35810040 -119820080 + Lx9 LINE L1 7425 7472 -172 4 858 273 29 0 0 chr4 35810042 35810076 -119820044 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 858 296 269 35 9 chr4 35810076 35810192 -119819928 + Lx9 LINE L1 7517 7635 -9 4 858 189 250 38 19 chr4 35810642 35810695 -119819425 + MIR SINE MIR 35 88 -174 4 858 213 39 0 0 chr4 35810787 35810813 -119819307 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 858 232 357 70 18 chr4 35811221 35811392 -119818728 - MIR SINE MIR -52 210 31 4 858 574 71 10 10 chr4 35812469 35812568 -119817552 + L1Md_F2 LINE L1 6484 6582 0 4 858 1200 225 43 92 chr4 35812838 35813229 -119816891 + ORR1D1 LTR MaLR 1 372 -2 4 858 38429 7 0 1 chr4 35814033 35819821 -119810299 + L1Md_A LINE L1 1 5586 -297 4 858 8994 4 0 0 chr4 35819821 35820817 -119809303 + L1Md_A LINE L1 5587 6582 0 4 858 949 241 155 9 chr4 35821183 35821506 -119808614 - ORR1D2 LTR MaLR 0 370 1 4 858 1111 243 88 30 chr4 35821661 35821992 -119808128 - ORR1E LTR MaLR -6 353 4 4 858 1620 25 0 4 chr4 35822355 35822600 -119807520 + (TTCC)n Simple_repeat Simple_repeat 1 244 0 4 858 1593 0 0 0 chr4 35822600 35822777 -119807343 + (TTC)n Simple_repeat Simple_repeat 1 177 0 4 858 1071 97 7 0 chr4 35822781 35822925 -119807195 - B1_Mus1 SINE Alu -2 146 2 4 858 31 0 0 0 chr4 35824157 35824188 -119805932 + AT_rich Low_complexity Low_complexity 1 31 0 4 858 450 0 0 0 chr4 35824202 35824252 -119805868 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 858 579 29 0 0 chr4 35824491 35824560 -119805560 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 858 189 0 0 0 chr4 35824560 35824580 -119805540 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 858 24 53 0 0 chr4 35824899 35824937 -119805183 + AT_rich Low_complexity Low_complexity 1 38 0 4 858 239 228 81 71 chr4 35825179 35825278 -119804842 + PB1D10 SINE Alu 13 112 -5 4 858 315 0 0 0 chr4 35825305 35825340 -119804780 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 858 306 266 125 27 chr4 35825553 35825665 -119804455 + MLT1H LTR MaLR 337 459 -90 4 858 297 0 0 0 chr4 35825713 35825746 -119804374 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 858 588 213 168 0 chr4 35826221 35826418 -119803702 - Lx9 LINE L1 -4 7640 7411 4 858 1570 251 11 8 chr4 35826430 35826799 -119803321 + Lx9 LINE L1 7015 7384 -260 4 858 228 200 52 52 chr4 35826807 35826865 -119803255 + MTEa LTR MaLR 320 377 -2 4 858 205 291 94 54 chr4 35827373 35827522 -119802598 - L2a LINE L2 -6 3420 3266 4 858 1752 306 66 13 chr4 35827528 35828221 -119801899 + Lx8 LINE L1 6587 7316 -157 4 858 968 81 73 0 chr4 35828222 35828358 -119801762 + B1_Mus1 SINE Alu 2 147 -1 4 858 186 191 0 0 chr4 35829455 35829502 -119800618 + (CCA)n Simple_repeat Simple_repeat 3 49 0 4 858 394 232 58 48 chr4 35829531 35829635 -119800485 - RSINE1 SINE B4 -18 147 43 4 858 513 47 0 0 chr4 35830629 35830693 -119799427 + (CCA)n Simple_repeat Simple_repeat 3 66 0 4 858 379 315 45 30 chr4 35830728 35830862 -119799258 - RSINE1 SINE B4 -24 141 6 4 858 287 25 25 0 chr4 35831870 35831910 -119798210 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 858 1951 58 8 11 chr4 35834928 35835191 -119794929 + L1_Mus1 LINE L1 6304 6565 -2 4 858 1446 107 0 4 chr4 35835473 35835698 -119794422 + Lx LINE L1 6425 6648 -6 4 858 301 246 27 14 chr4 35837115 35837189 -119792931 - B4A SINE B4 -213 79 5 4 858 652 314 42 33 chr4 35838590 35838804 -119791316 - B3 SINE B2 0 216 1 4 858 1164 55 7 0 chr4 35838863 35839008 -119791112 + B1_Mus2 SINE Alu 2 147 0 4 858 381 89 19 47 chr4 35839008 35839114 -119791006 + A-rich Low_complexity Low_complexity 6 108 0 4 858 964 164 38 0 chr4 35839784 35839967 -119790153 + URR1A DNA MER1_type 29 218 -8 4 858 302 322 26 65 chr4 35840268 35840421 -119789699 + MLT1G1 LTR MaLR 398 544 -35 4 858 227 257 62 75 chr4 35842032 35842112 -119788008 - L2c LINE L2 -56 3331 3253 4 858 756 61 0 0 chr4 35842342 35842440 -119787680 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4 858 922 192 13 103 chr4 35844890 35845122 -119784998 + B3 SINE B2 1 211 -5 4 858 231 305 0 99 chr4 35845913 35846004 -119784116 - B1F2 SINE Alu -67 82 1 4 858 200 354 85 17 chr4 35846358 35846476 -119783644 - MIR SINE MIR -42 220 95 4 858 8249 33 8 3 chr4 35848609 35849592 -119780528 + L1Md_F2 LINE L1 5587 6574 -8 4 858 189 0 0 0 chr4 35850187 35850208 -119779912 + (T)n Simple_repeat Simple_repeat 1 21 0 4 858 392 325 131 20 chr4 35850718 35850963 -119779157 + B4A SINE B4 3 274 -18 4 858 372 48 48 0 chr4 35851047 35851110 -119779010 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 858 239 203 47 0 chr4 35851133 35851197 -119778923 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 858 644 24 0 12 chr4 35852205 35852288 -119777832 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 4 858 558 0 0 0 chr4 35852491 35852553 -119777567 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 858 493 305 31 0 chr4 35852557 35852685 -119777435 - RSINE1 SINE B4 -31 134 3 4 858 310 303 58 31 chr4 35853334 35853525 -119776595 + L1MC LINE L1 3138 3333 -2813 4 858 415 163 68 27 chr4 35854271 35854457 -119775663 + Lx9 LINE L1 7409 7623 -21 4 858 489 17 0 0 chr4 35854458 35854516 -119775604 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 4 858 3570 224 105 10 chr4 35854552 35854729 -119775391 + L1_Mur3 LINE L1 363 555 -7173 4 858 414 0 0 0 chr4 35854729 35854775 -119775345 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 858 3570 218 95 7 chr4 35854775 35855577 -119774543 + L1_Mur3 LINE L1 556 1440 -4440 4 858 3796 207 82 38 chr4 35855568 35856526 -119773594 + Lx7 LINE L1 6694 7694 -2 4 858 22 0 0 0 chr4 35856816 35856838 -119773282 + AT_rich Low_complexity Low_complexity 1 22 0 4 858 25488 20 1 0 chr4 35857461 35860444 -119769676 + L1Md_T LINE L1 2602 5586 -297 4 858 8210 44 1 0 chr4 35860444 35861439 -119768681 + L1Md_T LINE L1 5587 6582 0 4 858 181 169 0 33 chr4 35861632 35861693 -119768427 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 858 290 314 41 29 chr4 35862238 35862415 -119767705 + MLT1C LTR MaLR 204 467 0 4 858 946 118 7 0 chr4 35863422 35863566 -119766554 - URR1A DNA MER1_type -1 225 81 4 858 455 198 19 29 chr4 35863590 35863694 -119766426 - PB1D9 SINE Alu -15 105 3 4 858 365 302 47 0 chr4 35865258 35865387 -119764733 - B3 SINE B2 -1 215 81 4 858 435 247 21 0 chr4 35865404 35865497 -119764623 + B1F1 SINE Alu 47 141 -8 4 858 283 0 0 0 chr4 35865683 35865714 -119764406 - L1_Mm LINE L1 -536 5347 5317 4 858 2381 62 3 3 chr4 35865709 35865993 -119764127 + L1_Mm LINE L1 5302 5586 -297 4 858 8210 40 0 4 chr4 35865993 35866992 -119763128 + L1Md_F2 LINE L1 5587 6581 -1 4 858 2381 62 3 3 chr4 35866992 35867015 -119763105 + L1_Mm LINE L1 5587 5609 -274 4 858 324 357 64 0 chr4 35867419 35867559 -119762561 + B3A SINE B2 3 151 -47 4 858 674 211 0 15 chr4 35867704 35867839 -119762281 - B1_Mus1 SINE Alu -12 136 4 4 858 504 32 0 0 chr4 35868228 35868290 -119761830 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 858 23 33 0 0 chr4 35868396 35868426 -119761694 + AT_rich Low_complexity Low_complexity 1 30 0 4 858 567 144 0 0 chr4 35869366 35869463 -119760657 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 4 858 4805 161 73 9 chr4 35869939 35870793 -119759327 - RMER13B LTR ERVK 0 908 1 4 858 254 267 78 0 chr4 35871527 35871617 -119758503 - Tigger7 DNA MER2_type -80 2411 2315 4 858 883 340 99 38 chr4 35871856 35872299 -119757821 - Tigger7 DNA MER2_type -2021 470 1 4 858 230 120 20 20 chr4 35872941 35872992 -119757128 + (CAA)n Simple_repeat Simple_repeat 2 52 0 4 858 218 348 47 52 chr4 35876783 35876995 -119753125 + L2a LINE L2 3216 3426 0 4 858 372 368 75 5 chr4 35877448 35877661 -119752459 - MLT1D LTR MaLR -277 228 1 4 858 661 323 10 0 chr4 35877886 35878078 -119752042 - Lx9 LINE L1 -940 6704 6511 4 858 909 244 84 30 chr4 35878078 35878449 -119751671 + L1_Rod LINE L1 4984 5374 -473 4 858 612 221 38 19 chr4 35878445 35878602 -119751518 - Lx9 LINE L1 -465 7179 7020 4 858 191 284 68 0 chr4 35878740 35878814 -119751306 - MIRb SINE MIR -52 216 138 4 858 2679 189 34 16 chr4 35878902 35879456 -119750664 + Lx5 LINE L1 6484 7047 -3 4 858 29 0 0 0 chr4 35879648 35879677 -119750443 + AT_rich Low_complexity Low_complexity 1 29 0 4 858 1056 207 14 0 chr4 35880509 35880731 -119749389 + URR1A DNA MER1_type 2 226 0 4 858 295 157 0 19 chr4 35881514 35881566 -119748554 - 5S rRNA rRNA -70 51 1 4 858 648 132 0 0 chr4 35881638 35881744 -119748376 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 858 306 257 125 125 chr4 35882071 35882191 -119747929 + B1F SINE Alu 1 120 -29 4 858 766 86 42 12 chr4 35882206 35882371 -119747749 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 4 858 900 74 30 12 chr4 35882384 35882549 -119747571 + (TCTA)n Simple_repeat Simple_repeat 2 169 0 4 858 243 0 0 0 chr4 35882610 35882637 -119747483 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 858 507 186 263 0 chr4 35882642 35882760 -119747360 - B2_Mm2 SINE B2 -46 149 1 4 858 21 0 0 0 chr4 35885345 35885366 -119744754 + AT_rich Low_complexity Low_complexity 1 21 0 4 858 213 354 0 0 chr4 35886141 35886206 -119743914 + MER5A DNA MER1_type 1 65 -124 4 858 7850 86 2 1 chr4 35886949 35887982 -119742138 - L1_Mus3 LINE L1 -3 6635 5602 4 858 223 358 118 30 chr4 35889090 35889828 -119740292 - L2a LINE L2 -8 3418 2605 4 858 696 111 0 0 chr4 35891559 35891667 -119738453 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 858 243 61 0 0 chr4 35891681 35891714 -119738406 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 858 695 300 56 71 chr4 35892252 35892491 -119737629 + RMER5 LTR ERV1 21 267 -267 5 858 358 318 126 6 chr4 35892491 35892665 -119737455 + B3A SINE B2 2 196 -2 5 858 695 300 56 71 chr4 35892665 35892748 -119737372 + RMER5 LTR ERV1 268 338 -196 5 858 877 264 49 19 chr4 35892883 35893149 -119736971 + RMER5 LTR ERV1 258 531 -3 5 858 678 350 30 30 chr4 35893180 35893480 -119736640 + MLT1A0 LTR MaLR 22 321 -44 5 858 529 87 21 11 chr4 35893628 35893721 -119736399 + (CATA)n Simple_repeat Simple_repeat 3 96 0 5 858 188 348 8 51 chr4 35894790 35894868 -119735252 + L2 LINE L2 2332 2410 -1009 5 858 234 0 0 0 chr4 35894868 35894894 -119735226 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 858 306 0 0 0 chr4 35894894 35894927 -119735193 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 858 188 348 8 51 chr4 35894927 35894965 -119735155 + L2 LINE L2 2411 2443 -976 5 858 182 150 25 0 chr4 35895075 35895115 -119735005 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 5 858 285 29 0 0 chr4 35895378 35895412 -119734708 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 858 288 0 0 0 chr4 35896524 35896556 -119733564 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 858 350 365 94 7 chr4 35896574 35896712 -119733408 - B4 SINE B4 -133 159 10 5 858 449 327 139 100 chr4 35897101 35897410 -119732710 - MLT1G1 LTR MaLR -255 324 4 5 858 23 33 0 0 chr4 35897472 35897502 -119732618 + AT_rich Low_complexity Low_complexity 1 30 0 5 858 408 292 152 55 chr4 35897505 35897650 -119732470 + B3A SINE B2 1 159 -39 5 858 7931 156 82 18 chr4 35898302 35900112 -119730008 + Lx2 LINE L1 4890 6996 -1 5 858 2659 32 0 0 chr4 35900822 35901132 -119728988 + L1Md_F2 LINE L1 6259 6568 -14 5 858 222 37 0 0 chr4 35901208 35901235 -119728885 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 858 441 292 54 43 chr4 35901241 35901428 -119728692 + Lx8 LINE L1 6237 6426 -1047 5 858 25 0 0 0 chr4 35901574 35901599 -119728521 + AT_rich Low_complexity Low_complexity 1 25 0 5 858 2260 308 49 44 chr4 35901841 35902705 -119727415 + Lx8 LINE L1 6472 7360 -113 5 858 994 133 12 0 chr4 35902705 35902878 -119727242 + (GGA)n Simple_repeat Simple_repeat 2 176 0 5 858 663 13 0 0 chr4 35902879 35902955 -119727165 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 858 2260 308 49 44 chr4 35902955 35903080 -119727040 + Lx8 LINE L1 7361 7468 -5 5 858 398 304 70 61 chr4 35903314 35903542 -119726578 - MLT1C LTR MaLR -36 431 202 5 858 363 98 0 0 chr4 35903542 35903603 -119726517 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 858 396 0 0 0 chr4 35903603 35903647 -119726473 + (TATG)n Simple_repeat Simple_repeat 3 46 0 5 858 255 309 34 142 chr4 35903660 35903733 -119726387 - MLT1C LTR MaLR -285 182 130 5 858 459 146 650 0 chr4 35903733 35903870 -119726250 + URR1A DNA MER1_type 1 226 0 5 858 255 309 34 142 chr4 35903870 35904000 -119726120 - MLT1C LTR MaLR -338 129 1 5 858 496 405 16 8 chr4 35904118 35904372 -119725748 - B4A SINE B4 -7 285 30 5 858 359 324 40 20 chr4 35905585 35905733 -119724387 + Lx8 LINE L1 7196 7346 -127 5 858 230 256 93 0 chr4 35907020 35907106 -119723014 - L1MA7 LINE L1 -29 6262 6169 5 858 31 44 0 0 chr4 35907557 35907602 -119722518 + AT_rich Low_complexity Low_complexity 1 45 0 5 858 22 0 0 0 chr4 35907740 35907762 -119722358 + AT_rich Low_complexity Low_complexity 1 22 0 5 858 214 234 71 83 chr4 35907851 35907935 -119722185 - B3A SINE B2 -114 84 2 5 858 24 0 0 0 chr4 35909058 35909082 -119721038 + AT_rich Low_complexity Low_complexity 1 24 0 5 858 232 221 0 93 chr4 35909526 35909601 -119720519 - Zaphod2 DNA Tip100 -2254 1270 1203 5 858 24 0 0 0 chr4 35911207 35911231 -119718889 + AT_rich Low_complexity Low_complexity 1 24 0 5 858 318 123 0 0 chr4 35911564 35911621 -119718499 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 5 858 3690 66 8 4 chr4 35911987 35912460 -119717660 - L1_Mus1 LINE L1 0 6567 6093 5 858 2581 47 9 0 chr4 35912460 35912779 -119717341 + L1_Mus1 LINE L1 5826 6147 -420 5 859 303 25 25 0 chr4 35914106 35914146 -119715974 + U2 snRNA snRNA 1 41 -147 5 859 1487 191 27 114 chr4 35914799 35915212 -119714908 - ORR1C1 LTR MaLR -1 377 1 5 859 268 366 25 38 chr4 35915243 35915402 -119714718 - MER3 DNA MER1_type -38 171 15 5 859 432 0 0 0 chr4 35917410 35917458 -119712662 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 859 477 0 0 0 chr4 35917916 35917969 -119712151 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 859 38 22 0 0 chr4 35919207 35919252 -119710868 + AT_rich Low_complexity Low_complexity 1 45 0 5 859 1579 114 88 7 chr4 35919798 35920071 -119710049 + ORR1A4 LTR MaLR 1 295 -34 5 859 862 159 0 27 chr4 35920071 35920220 -119709900 - L1_Mus4 LINE L1 -250 5633 5489 5 859 7154 92 9 8 chr4 35920186 35921169 -119708951 + L1_Mus4 LINE L1 5631 6614 -22 5 859 288 0 0 0 chr4 35921169 35921201 -119708919 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 859 300 91 0 0 chr4 35921201 35921247 -119708873 + ORR1A4 LTR MaLR 273 312 -14 5 859 1040 200 37 11 chr4 35921404 35921672 -119708448 - L1_Rod LINE L1 -927 4920 4646 5 859 4066 245 64 5 chr4 35921671 35922049 -119708071 + Lx9 LINE L1 6306 6688 -956 5 859 1013 149 11 0 chr4 35922049 35922224 -119707896 + L1_Mus3 LINE L1 6460 6636 -2 5 859 4066 245 64 5 chr4 35922224 35922871 -119707249 + Lx9 LINE L1 6689 7392 -252 5 859 360 64 0 0 chr4 35922887 35922934 -119707186 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 859 427 227 0 66 chr4 35922945 35923082 -119707038 + Lx9 LINE L1 7516 7643 -1 5 859 473 336 0 0 chr4 35923241 35923357 -119706763 + RSINE1 SINE B4 3 118 -47 5 859 225 378 126 16 chr4 35923357 35923432 -119706688 + B3 SINE B2 2 213 -3 5 859 344 279 19 19 chr4 35923931 35924088 -119706032 + (TA)n Simple_repeat Simple_repeat 1 157 0 5 859 189 0 0 0 chr4 35924142 35924163 -119705957 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 859 447 217 0 0 chr4 35924282 35924388 -119705732 + (CA)n Simple_repeat Simple_repeat 2 107 0 5 859 355 141 0 45 chr4 35924388 35924455 -119705665 + HAL1-3A_ME LINE L1 1976 2039 -819 5 859 782 209 29 0 chr4 35924484 35924656 -119705464 + URR1A DNA MER1_type 50 226 0 5 859 3020 54 0 0 chr4 35925830 35926201 -119703919 + L1Md_F2 LINE L1 5216 5586 -297 5 859 7470 54 22 5 chr4 35926202 35927165 -119702955 + L1Md_F2 LINE L1 5588 6566 -16 5 859 23 0 0 0 chr4 35927167 35927190 -119702930 + AT_rich Low_complexity Low_complexity 1 23 0 5 859 279 309 57 29 chr4 35927282 35927422 -119702698 - MER103 DNA DNA -20 146 3 5 859 3227 43 5 0 chr4 35927849 35928243 -119701877 - MTA_Mm LTR MaLR 0 396 1 5 859 3450 80 0 0 chr4 35928544 35928996 -119701124 + L1_Mus1 LINE L1 6116 6567 0 5 859 180 0 0 0 chr4 35929215 35929235 -119700885 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 859 384 119 0 0 chr4 35929235 35929293 -119700827 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 859 243 381 17 8 chr4 35930243 35930362 -119699758 - MLT1A1 LTR MaLR -1 389 270 5 859 787 233 0 0 chr4 35930455 35930605 -119699515 - B1_Mur4 SINE Alu 0 150 1 5 859 265 253 89 0 chr4 35930688 35930767 -119699353 - MLT1A1 LTR MaLR -322 86 1 5 859 22 35 0 0 chr4 35931275 35931304 -119698816 + AT_rich Low_complexity Low_complexity 1 29 0 5 859 225 0 0 0 chr4 35931698 35931723 -119698397 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 859 22 35 0 0 chr4 35932205 35932234 -119697886 + AT_rich Low_complexity Low_complexity 1 29 0 5 859 558 354 41 41 chr4 35932274 35932542 -119697578 + B4A SINE B4 2 269 -23 5 859 4978 133 32 20 chr4 35932560 35933443 -119696677 + RMER17A2 LTR ERVK 1 893 -13 5 859 346 234 8 8 chr4 35933458 35933587 -119696533 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 859 1169 338 134 19 chr4 35935224 35935908 -119694212 - MTE-int LTR MaLR -27 1553 791 5 859 891 266 232 16 chr4 35935993 35936394 -119693726 + MT2A LTR ERVL 1 489 -44 5 859 578 82 12 0 chr4 35936394 35936479 -119693641 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 859 484 266 6 25 chr4 35936479 35936510 -119693610 + MT2A LTR ERVL 490 519 -14 5 859 607 184 18 0 chr4 35936577 35936691 -119693429 + URR1B DNA MER1_type 110 225 0 5 859 15306 197 48 35 chr4 35936715 35937082 -119693038 + MERVL_2A-int LTR ERVL 1 390 -5371 5 859 2215 147 49 7 chr4 35937082 35937487 -119692633 + BGLII_Mus LTR ERVK 1 422 0 5 859 15306 197 48 35 chr4 35937487 35937731 -119692389 + MERVL_2A-int LTR ERVL 391 628 -5133 5 859 4144 59 40 9 chr4 35937731 35938274 -119691846 + LTRIS2 LTR ERV1 5 564 0 5 859 15306 197 48 35 chr4 35938274 35941033 -119689087 + MERVL_2A-int LTR ERVL 629 3416 -2345 5 859 4181 207 46 1 chr4 35941028 35941868 -119688252 + MERVL_2A-int LTR ERVL 4745 5622 -139 5 859 262 208 0 40 chr4 35941875 35941950 -119688170 + ORR1A3-int LTR MaLR 567 638 -1325 5 859 369 107 0 0 chr4 35941951 35942007 -119688113 + MERVL_2A-int LTR ERVL 5706 5761 0 5 859 1003 260 194 68 chr4 35942007 35942125 -119687995 + MT2A LTR ERVL 1 115 -418 5 859 444 19 0 0 chr4 35942125 35942178 -119687942 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 859 1003 260 194 68 chr4 35942178 35942471 -119687649 + MT2A LTR ERVL 116 464 -69 5 859 277 356 61 106 chr4 35942490 35942820 -119687300 - MTE-int LTR MaLR -895 685 371 5 859 353 305 146 10 chr4 35942880 35943079 -119687041 - MTE-int LTR MaLR -1353 227 2 5 859 227 303 76 33 chr4 35943640 35943732 -119686388 + MIRb SINE MIR 151 246 -22 5 859 1200 288 75 3 chr4 35943921 35944266 -119685854 - MTEb LTR MaLR -9 370 1 5 859 21 36 0 0 chr4 35944496 35944524 -119685596 + AT_rich Low_complexity Low_complexity 1 28 0 5 859 3291 32 71 7 chr4 35944524 35944934 -119685186 + RLTR10C LTR ERVK 1 436 0 5 859 1117 252 51 18 chr4 35944956 35945231 -119684889 + MTD LTR MaLR 40 323 -96 5 859 222 37 0 0 chr4 35945243 35945270 -119684850 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 859 1123 94 6 6 chr4 35945270 35945430 -119684690 - B2_Mm1t SINE B2 -33 160 1 5 859 358 214 80 20 chr4 35945430 35945529 -119684591 + MTD LTR MaLR 317 421 0 5 859 432 295 53 18 chr4 35946101 35946270 -119683850 - L3 LINE CR1 -150 4339 4165 5 859 21 36 0 0 chr4 35946377 35946405 -119683715 + AT_rich Low_complexity Low_complexity 1 28 0 5 859 24 32 0 0 chr4 35946865 35946896 -119683224 + AT_rich Low_complexity Low_complexity 1 31 0 5 859 200 191 42 21 chr4 35947590 35947638 -119682482 - MIRc SINE MIR -88 180 132 5 859 380 316 95 0 chr4 35947987 35948210 -119681910 - L1MA7 LINE L1 -18 6273 6033 5 859 26 30 0 0 chr4 35948335 35948368 -119681752 + AT_rich Low_complexity Low_complexity 1 33 0 5 859 1031 287 89 48 chr4 35951268 35951810 -119678310 + MER67C LTR ERV1 146 709 -2 5 859 405 0 0 0 chr4 35952050 35952095 -119678025 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 859 526 291 99 30 chr4 35952491 35952693 -119677427 - B3 SINE B2 0 216 1 5 859 2663 185 77 76 chr4 35952749 35953499 -119676621 + ORR1B1-int LTR MaLR 42 758 -1205 5 859 1205 172 81 8 chr4 35953327 35953561 -119676559 + MT2B LTR ERVL 6 256 -345 5 859 3665 181 79 87 chr4 35953569 35954993 -119675127 + ORR1B1-int LTR MaLR 720 1772 -191 5 859 669 206 49 21 chr4 35954983 35955189 -119674931 + ORR1B1 LTR MaLR 22 206 -188 5 859 2590 196 46 95 chr4 35955190 35955865 -119674255 + RLTR26 LTR ERVK 1 642 0 6 859 911 164 17 28 chr4 35955865 35956038 -119674082 + ORR1B1 LTR MaLR 224 394 0 5 859 637 272 46 0 chr4 35957265 35957460 -119672660 + B3 SINE B2 3 206 -10 6 859 2667 71 3 29 chr4 35958055 35958433 -119671687 - L1Md_F2 LINE L1 -2 6580 6213 6 859 259 222 55 14 chr4 35958680 35958753 -119671367 - MTE2a LTR MaLR -10 369 294 6 859 248 271 47 12 chr4 35959038 35959124 -119670996 - MER2 DNA MER2_type -159 186 98 6 859 21 36 0 0 chr4 35960794 35960822 -119669298 + AT_rich Low_complexity Low_complexity 1 28 0 6 859 493 144 36 9 chr4 35960952 35961064 -119669056 - L1_Mur2 LINE L1 -3622 2255 2141 6 859 4141 174 159 31 chr4 35962773 35963852 -119666268 + L1_Mur2 LINE L1 2284 3501 -2376 6 859 239 93 23 0 chr4 35963853 35963896 -119666224 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 859 281 293 194 8 chr4 35964139 35964263 -119665857 + RSINE1 SINE B4 11 157 -8 6 859 292 365 6 0 chr4 35965508 35965664 -119664456 + (CCCA)n Simple_repeat Simple_repeat 3 159 0 6 859 367 316 7 0 chr4 35965694 35965833 -119664287 + (CA)n Simple_repeat Simple_repeat 1 140 0 6 859 28 48 0 0 chr4 35966293 35966335 -119663785 + AT_rich Low_complexity Low_complexity 1 42 0 6 859 4067 91 34 15 chr4 35966599 35967686 -119662434 + L1Md_F LINE L1 594 1701 -4182 6 859 324 70 0 0 chr4 35967732 35967775 -119662345 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 859 1345 264 82 23 chr4 35968043 35968431 -119661689 + MTD LTR MaLR 1 411 -8 6 859 252 0 0 0 chr4 35968631 35968659 -119661461 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 859 241 256 0 163 chr4 35969301 35969399 -119660721 + B1F SINE Alu 2 83 -66 6 859 40177 15 6 6 chr4 35970204 35976384 -119653736 - L1Md_A LINE L1 0 6582 419 6 859 552 154 0 0 chr4 35976979 35977083 -119653037 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 859 236 242 38 53 chr4 35977277 35977408 -119652712 - Lx9 LINE L1 0 7644 7516 6 859 39 22 0 0 chr4 35977942 35977988 -119652132 + AT_rich Low_complexity Low_complexity 1 46 0 6 859 210 37 0 0 chr4 35978444 35978471 -119651649 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 859 946 61 29 50 chr4 35978471 35978610 -119651510 - B1_Mm SINE Alu -11 136 1 6 859 2179 190 78 24 chr4 35978807 35979361 -119650759 + RLTR31A_Mm LTR ERVK 1 584 0 6 859 211 376 0 0 chr4 35979402 35979487 -119650633 - L3 LINE CR1 -72 4417 4333 6 859 545 291 122 84 chr4 35979662 35980004 -119650116 + MLT2C2 LTR ERVL 10 416 -48 6 859 378 162 0 0 chr4 35980004 35980078 -119650042 + CT-rich Low_complexity Low_complexity 2 75 0 6 859 366 23 0 0 chr4 35980078 35980121 -119649999 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 859 392 275 50 0 chr4 35980430 35980550 -119649570 + MER2 DNA MER2_type 98 223 -122 6 859 264 266 12 25 chr4 35981258 35981339 -119648781 + L1MD3 LINE L1 7904 7983 -12 6 859 228 250 23 81 chr4 35981345 35981432 -119648688 + ID4 SINE ID 2 83 0 6 859 1188 185 9 9 chr4 35983000 35983224 -119646896 - URR1B DNA MER1_type 0 225 2 6 859 258 318 17 78 chr4 35983843 35983959 -119646161 - ID_B1 SINE B4 0 224 116 6 859 3349 80 9 2 chr4 35984007 35984461 -119645659 - L1_Mus1 LINE L1 0 6567 6111 6 859 381 43 0 0 chr4 35984530 35984577 -119645543 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 6 859 225 0 0 0 chr4 35984677 35984702 -119645418 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 859 320 299 56 0 chr4 35984739 35984838 -119645282 + ID4_ SINE ID 1 105 -47 6 859 713 219 20 14 chr4 35984838 35984986 -119645134 + B1_Mur4 SINE Alu 2 150 0 6 859 315 306 60 60 chr4 35984999 35985166 -119644954 + MIR SINE MIR 66 232 -30 6 859 22 0 0 0 chr4 35985386 35985408 -119644712 + AT_rich Low_complexity Low_complexity 1 22 0 6 859 287 366 9 30 chr4 35985422 35985557 -119644563 + PB1D9 SINE Alu 6 139 -10 6 859 285 287 60 83 chr4 35986882 35987015 -119643105 - L2b LINE L2 -3 3372 3243 6 859 396 0 0 0 chr4 35987927 35987971 -119642149 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 859 436 262 0 88 chr4 35987971 35988084 -119642036 - B1_Mur4 SINE Alu -16 104 2 6 859 28 48 0 0 chr4 35988627 35988669 -119641451 + AT_rich Low_complexity Low_complexity 1 42 0 6 859 319 340 42 0 chr4 35988928 35989072 -119641048 + MER5A1 DNA MER1_type 11 160 -6 6 859 189 0 0 0 chr4 35989625 35989646 -119640474 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 859 272 282 41 117 chr4 35990081 35990141 -119639979 + RMER12 LTR ERVK 695 748 -574 6 859 616 80 20 0 chr4 35990141 35990241 -119639879 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 6 859 272 282 41 117 chr4 35990241 35990377 -119639743 + RMER12 LTR ERVK 749 876 -446 6 859 21 0 0 0 chr4 35992319 35992340 -119637780 + AT_rich Low_complexity Low_complexity 1 21 0 6 859 253 348 0 11 chr4 35993167 35993260 -119636860 + Tigger5 DNA MER2_type 8 99 -2307 6 859 983 90 24 0 chr4 35993275 35993441 -119636679 + (TG)n Simple_repeat Simple_repeat 1 170 0 6 859 606 107 60 0 chr4 35993456 35993606 -119636514 + (TG)n Simple_repeat Simple_repeat 2 160 0 6 859 207 0 0 0 chr4 35993892 35993915 -119636205 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 859 238 333 13 0 chr4 35994430 35994505 -119635615 - L2c LINE L2 -46 3341 3266 6 859 624 145 21 0 chr4 35994774 35994919 -119635201 + CT-rich Low_complexity Low_complexity 2 149 0 6 859 280 286 0 60 chr4 35996435 35996502 -119633618 + B1F SINE Alu 43 105 -44 6 859 22 0 0 0 chr4 35996512 35996534 -119633586 + AT_rich Low_complexity Low_complexity 1 22 0 6 859 6107 64 0 1 chr4 35996578 35997357 -119632763 + L1Md_T LINE L1 5805 6582 0 6 859 23 78 0 0 chr4 35997363 35997414 -119632706 + AT_rich Low_complexity Low_complexity 1 51 0 6 859 228 324 0 0 chr4 35997566 35997640 -119632480 + GA-rich Low_complexity Low_complexity 1 74 0 6 859 217 291 0 0 chr4 35997810 35997865 -119632255 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 859 243 0 0 0 chr4 36002164 36002191 -119627929 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 859 211 269 0 0 chr4 36002626 36002678 -119627442 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 859 387 0 0 0 chr4 36002680 36002723 -119627397 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 859 21 36 0 0 chr4 36004109 36004137 -119625983 + AT_rich Low_complexity Low_complexity 1 28 0 4 859 618 14 0 0 chr4 36004753 36004824 -119625296 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 859 510 31 0 0 chr4 36005239 36005303 -119624817 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 859 363 182 0 0 chr4 36005303 36005380 -119624740 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 859 2287 226 62 30 chr4 36005871 36006025 -119624095 - Lx7 LINE L1 0 7696 7539 8 859 216 0 0 0 chr4 36006025 36006049 -119624071 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 859 2287 226 62 30 chr4 36006049 36006527 -119623593 - Lx7 LINE L1 -158 7538 7044 8 859 612 284 23 41 chr4 36006534 36006754 -119623366 - Lx7 LINE L1 -1624 6072 5857 8 859 1725 174 38 116 chr4 36006742 36006919 -119623201 - Lx7 LINE L1 -552 5328 5166 8 859 279 0 0 0 chr4 36006919 36006950 -119623170 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 859 1725 174 38 116 chr4 36006950 36007332 -119622788 - Lx7 LINE L1 -715 5165 4813 8 859 735 289 27 59 chr4 36007448 36007669 -119622451 - ORR1C1 LTR MaLR -164 214 1 1 859 246 239 41 27 chr4 36007675 36007748 -119622372 + MTC LTR MaLR 343 416 -5 1 859 271 314 109 19 chr4 36008790 36008946 -119621174 - MIRb SINE MIR -40 228 59 1 859 194 327 36 84 chr4 36008982 36009149 -119620971 - MIR3 SINE MIR -38 170 12 1 859 3597 81 2 67 chr4 36009844 36010398 -119619722 + L1Md_F2 LINE L1 6054 6571 -11 1 859 200 114 29 0 chr4 36010427 36010462 -119619658 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 859 471 78 0 0 chr4 36010730 36010794 -119619326 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 859 392 342 173 13 chr4 36010848 36011242 -119618878 + L1M5 LINE L1 2956 3412 -2734 1 859 24 0 0 0 chr4 36011348 36011372 -119618748 + AT_rich Low_complexity Low_complexity 1 24 0 1 859 626 293 30 30 chr4 36011443 36011696 -119618424 - L1_Mur3 LINE L1 -265 5582 5329 2 859 234 0 0 0 chr4 36011696 36011722 -119618398 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 859 613 293 30 30 chr4 36011722 36011739 -119618381 - L1_Mur3 LINE L1 -519 5328 5312 2 859 847 114 0 28 chr4 36011744 36011888 -119618232 - L1Md_F2 LINE L1 -12 6570 6431 2 859 2883 171 26 28 chr4 36011954 36012040 -119618080 - RLTR20A LTR ERVK -3 538 441 2 859 375 23 0 0 chr4 36012040 36012084 -119618036 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 859 2883 171 26 28 chr4 36012084 36012421 -119617699 - RLTR20A LTR ERVK -101 440 114 2 859 632 145 30 0 chr4 36012421 36012552 -119617568 - Lx2 LINE L1 0 6997 6863 2 859 2883 171 26 28 chr4 36012552 36012664 -119617456 - RLTR20A LTR ERVK -428 113 4 2 859 246 62 0 0 chr4 36013236 36013268 -119616852 + (TATG)n Simple_repeat Simple_repeat 3 34 0 2 859 1662 188 32 82 chr4 36013282 36013659 -119616461 + ORR1B1 LTR MaLR 1 358 -36 2 859 196 28 83 0 chr4 36013660 36013696 -119616424 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 859 231 423 16 0 chr4 36014257 36014380 -119615740 + MLT1E1A LTR MaLR 3 127 -553 2 859 297 333 81 81 chr4 36015187 36015471 -119614649 + B4 SINE B4 9 292 0 3 859 194 192 19 0 chr4 36015975 36016027 -119614093 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 859 1087 95 0 0 chr4 36016107 36016254 -119613866 + B1_Mus2 SINE Alu 1 147 0 3 859 216 0 0 0 chr4 36016254 36016278 -119613842 + (A)n Simple_repeat Simple_repeat 1 24 0 3 859 357 287 32 0 chr4 36016979 36017073 -119613047 + Lx9 LINE L1 7074 7170 -474 3 859 23 0 0 0 chr4 36017306 36017329 -119612791 + AT_rich Low_complexity Low_complexity 1 23 0 3 859 21 0 0 0 chr4 36017364 36017385 -119612735 + AT_rich Low_complexity Low_complexity 1 21 0 3 859 1123 77 0 40 chr4 36017514 36017690 -119612430 - L1Md_F2 LINE L1 0 6582 6414 3 859 247 25 24 24 chr4 36018601 36018642 -119611478 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 3 859 404 106 11 34 chr4 36019529 36019617 -119610503 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 859 284 369 39 74 chr4 36020186 36020417 -119609703 + MIRb SINE MIR 20 242 -26 4 859 4382 152 45 7 chr4 36020650 36020692 -119609428 - L1_Mur2 LINE L1 -1202 4675 4634 4 859 669 25 0 0 chr4 36020692 36020771 -119609349 + (TTTTC)n Simple_repeat Simple_repeat 1 79 0 4 859 4382 152 45 7 chr4 36020771 36021557 -119608563 - L1_Mur2 LINE L1 -1244 4633 3818 4 859 3241 53 0 5 chr4 36021575 36021972 -119608148 + L1Md_F2 LINE L1 6167 6561 -21 4 859 492 18 0 0 chr4 36021972 36022029 -119608091 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 859 7271 169 59 4 chr4 36022062 36024200 -119605920 + Lx2B LINE L1 4736 6996 -4 4 859 376 286 224 21 chr4 36024513 36024656 -119605464 - B3A SINE B2 -16 182 11 4 859 242 240 53 13 chr4 36024973 36025049 -119605071 - MTEb LTR MaLR 0 379 301 4 859 2950 72 23 3 chr4 36025289 36025677 -119604443 - MTA_Mm LTR MaLR 0 396 1 4 859 371 314 98 42 chr4 36027125 36027361 -119602759 - MIRb SINE MIR 0 268 20 4 859 247 349 92 8 chr4 36027718 36027848 -119602272 - MIR3 SINE MIR -48 160 20 5 859 226 278 157 51 chr4 36029134 36029350 -119600770 - Lx8 LINE L1 -9 7464 7226 5 859 1113 8 0 0 chr4 36030175 36030301 -119599819 + (TTC)n Simple_repeat Simple_repeat 1 126 0 5 859 447 19 0 0 chr4 36030301 36030353 -119599767 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 859 22 35 0 0 chr4 36030526 36030555 -119599565 + AT_rich Low_complexity Low_complexity 1 29 0 5 859 259 23 70 0 chr4 36031051 36031094 -119599026 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 859 1590 248 49 59 chr4 36031099 36031592 -119598528 - RMER19C LTR ERVK -18 593 106 5 859 350 354 45 72 chr4 36031669 36032004 -119598116 + MER67D LTR ERV1 70 395 -119 5 859 590 164 17 0 chr4 36032277 36032393 -119597727 + CT-rich Low_complexity Low_complexity 3 120 0 5 859 216 361 15 96 chr4 36032442 36032577 -119597543 + L2b LINE L2 3238 3405 -21 5 859 480 321 77 109 chr4 36032831 36033020 -119597100 + MLT1A0 LTR MaLR 1 197 -168 6 859 4992 128 19 21 chr4 36033020 36033820 -119596300 + Lx2 LINE L1 6197 6994 -3 6 859 480 321 77 109 chr4 36033820 36034007 -119596113 + MLT1A0 LTR MaLR 198 365 0 6 859 21 36 0 0 chr4 36035365 36035393 -119594727 + AT_rich Low_complexity Low_complexity 1 28 0 6 859 789 204 0 0 chr4 36036738 36036905 -119593215 + CT-rich Low_complexity Low_complexity 3 169 0 6 859 332 118 0 0 chr4 36036905 36036956 -119593164 + RLTR11B LTR ERVK 402 452 -1 6 859 181 300 86 32 chr4 36037274 36037367 -119592753 + L4 LINE RTE 1500 1597 -432 6 859 22 70 0 0 chr4 36037536 36037579 -119592541 + AT_rich Low_complexity Low_complexity 1 43 0 6 859 21 89 0 0 chr4 36038390 36038446 -119591674 + AT_rich Low_complexity Low_complexity 1 56 0 6 859 1059 116 0 0 chr4 36039327 36039474 -119590646 - B1_Mus1 SINE Alu 0 148 2 6 859 1128 124 10 45 chr4 36040728 36040930 -119589190 - B2_Mm2 SINE B2 0 195 1 6 859 293 288 74 116 chr4 36041165 36041354 -119588766 + MamGypLTR1a LTR Gypsy 566 746 -38 7 859 311 354 88 18 chr4 36041580 36041807 -119588313 - Charlie16a DNA MER1_type -1 341 99 7 859 842 330 62 24 chr4 36042382 36042804 -119587316 + Lx8 LINE L1 6195 6632 -841 7 859 247 312 159 9 chr4 36042836 36043062 -119587058 + Lx8 LINE L1 6842 7101 -372 7 859 609 135 0 0 chr4 36043295 36043421 -119586699 + (CA)n Simple_repeat Simple_repeat 2 127 0 7 859 345 353 190 21 chr4 36043608 36043897 -119586223 - L1MD2 LINE L1 -247 6112 5775 7 859 1190 26 0 13 chr4 36043913 36044067 -119586053 - L1Md_F3 LINE L1 -10 6574 6423 7 859 184 258 48 0 chr4 36044693 36044755 -119585365 - L4 LINE RTE -1768 261 197 7 860 245 61 0 0 chr4 36044987 36045020 -119585100 - B1_Mur4 SINE Alu -117 33 1 7 860 1083 42 7 0 chr4 36045036 36045180 -119584940 - L1Md_A LINE L1 0 6582 6438 7 860 504 81 0 0 chr4 36045215 36045289 -119584831 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 860 420 55 0 0 chr4 36045289 36045344 -119584776 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 860 209 21 19 94 chr4 36047710 36047763 -119582357 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 860 235 299 96 62 chr4 36048772 36048791 -119581329 - B4A SINE B4 -59 233 215 8 860 423 0 0 0 chr4 36048791 36048838 -119581282 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 8 860 275 307 43 17 chr4 36048845 36048961 -119581159 - B1_Mur1 SINE Alu -30 119 1 8 860 1402 272 82 68 chr4 36048973 36049268 -119580852 - L1M2 LINE L1 -1452 4691 4407 8 860 225 65 0 0 chr4 36049268 36049299 -119580821 + (TTG)n Simple_repeat Simple_repeat 3 33 0 8 860 1402 272 82 68 chr4 36049299 36049447 -119580673 - L1M2 LINE L1 -1737 4406 4260 8 860 581 40 13 0 chr4 36049447 36049523 -119580597 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 860 1402 272 82 68 chr4 36049523 36050007 -119580113 - L1M2 LINE L1 -1884 4259 3750 8 860 6344 39 3 7 chr4 36050053 36050828 -119579292 - L1Md_F2 LINE L1 0 6582 5811 8 860 236 256 291 0 chr4 36050965 36051051 -119579069 + MTE-int LTR MaLR 1374 1484 -96 8 860 332 237 46 99 chr4 36051366 36051440 -119578680 + MTEa LTR MaLR 256 321 -58 9 860 663 302 136 41 chr4 36051440 36051785 -119578335 + MTE2a LTR MaLR 2 379 0 9 860 332 237 46 99 chr4 36051785 36051841 -119578279 + MTEa LTR MaLR 322 379 0 9 860 378 0 0 0 chr4 36052486 36052528 -119577592 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 860 384 22 0 0 chr4 36052590 36052635 -119577485 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 860 435 358 63 41 chr4 36052822 36053093 -119577027 + MER119 DNA MER1_type 1 277 -306 9 860 1215 251 54 35 chr4 36053108 36053312 -119576808 - ORR1C1 LTR MaLR 0 378 165 9 860 423 0 0 0 chr4 36053312 36053359 -119576761 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 860 1215 251 54 35 chr4 36053359 36053525 -119576595 - ORR1C1 LTR MaLR -214 164 2 9 860 5524 204 95 33 chr4 36053525 36054545 -119575575 - ORR1C1-int LTR MaLR 0 1509 393 9 860 2260 107 18 0 chr4 36054545 36054883 -119575237 + L1_Mus2 LINE L1 6223 6566 0 9 860 5524 204 95 33 chr4 36054883 36055282 -119574838 - ORR1C1-int LTR MaLR -1117 392 2 9 860 1586 173 154 18 chr4 36055283 36055613 -119574507 - ORR1C1 LTR MaLR 0 378 4 9 860 2005 36 4 4 chr4 36056177 36056425 -119573695 - L1Md_F3 LINE L1 -14 6570 6323 9 860 593 137 68 8 chr4 36056467 36056599 -119573521 + Lx2A1 LINE L1 6865 7004 -4 9 860 32 43 0 0 chr4 36056606 36056652 -119573468 + AT_rich Low_complexity Low_complexity 1 46 0 1 860 26 30 0 0 chr4 36057031 36057064 -119573056 + AT_rich Low_complexity Low_complexity 1 33 0 1 860 28 29 0 0 chr4 36057094 36057129 -119572991 + AT_rich Low_complexity Low_complexity 1 35 0 1 860 366 214 0 0 chr4 36057342 36057431 -119572689 + (CATA)n Simple_repeat Simple_repeat 1 89 0 1 860 382 285 29 21 chr4 36058472 36058612 -119571508 - B1F SINE Alu -8 141 1 1 860 361 94 0 0 chr4 36058784 36058837 -119571283 + L1_Mur1 LINE L1 3987 4039 -1847 1 860 2099 84 3 7 chr4 36058837 36059138 -119570982 + L1Md_F2 LINE L1 6279 6578 -4 1 860 5574 239 109 34 chr4 36059156 36060875 -119569245 + Lx7 LINE L1 5850 7696 0 1 860 194 200 56 111 chr4 36062035 36062125 -119567995 - L3 LINE CR1 -2441 2048 1964 1 860 276 314 19 19 chr4 36062647 36062751 -119567369 - L3 LINE CR1 -200 4289 4186 1 860 1890 169 238 10 chr4 36062922 36063000 -119567120 + RMER6C LTR ERVK 45 135 -555 1 860 4565 43 2 2 chr4 36063000 36063555 -119566565 - L1Md_F2 LINE L1 -2 6580 6026 1 860 1890 169 238 10 chr4 36063555 36063733 -119566387 + RMER6C LTR ERVK 136 349 -341 1 860 342 107 0 0 chr4 36063733 36063789 -119566331 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 860 333 0 0 0 chr4 36063789 36063825 -119566295 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 860 1890 169 238 10 chr4 36063825 36064087 -119566033 + RMER6C LTR ERVK 350 683 -7 1 860 1529 167 167 35 chr4 36064902 36065274 -119564846 + MTC LTR MaLR 1 421 0 1 860 4551 34 25 0 chr4 36065581 36066134 -119563986 + L1Md_F2 LINE L1 5019 5585 -298 1 860 8104 32 9 2 chr4 36066135 36067113 -119563007 + L1Md_F2 LINE L1 5587 6571 -11 1 860 248 320 142 24 chr4 36067249 36067427 -119562693 - MIR SINE MIR -40 228 29 1 860 183 80 0 0 chr4 36067731 36067756 -119562364 + (T)n Simple_repeat Simple_repeat 1 25 0 1 860 3938 146 29 10 chr4 36068561 36069280 -119560840 + L1_Mur2 LINE L1 3770 4502 -1375 1 860 688 218 138 0 chr4 36069591 36069765 -119560355 + B3 SINE B2 19 216 0 1 860 408 40 0 0 chr4 36070760 36070810 -119559310 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 860 26 0 0 0 chr4 36070933 36070959 -119559161 + AT_rich Low_complexity Low_complexity 1 26 0 1 860 352 331 54 18 chr4 36071799 36071965 -119558155 - MIRm SINE MIR -76 200 29 1 860 522 119 0 0 chr4 36072841 36072925 -119557195 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 860 238 313 0 0 chr4 36072929 36072996 -119557124 + MIR SINE MIR 186 252 -10 1 860 243 203 0 0 chr4 36074532 36074591 -119555529 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 860 203 327 102 9 chr4 36075384 36075492 -119554628 + L2 LINE L2 1475 1592 -1827 1 860 21 89 0 0 chr4 36075599 36075655 -119554465 + AT_rich Low_complexity Low_complexity 1 56 0 1 860 2120 81 7 3 chr4 36076186 36076482 -119553638 + L1_Mus2 LINE L1 6270 6566 0 1 860 21 0 0 0 chr4 36076827 36076848 -119553272 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 268 250 0 0 chr4 36077305 36077386 -119552734 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 860 426 20 0 0 chr4 36077482 36077533 -119552587 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 860 202 183 32 32 chr4 36077973 36078035 -119552085 + T-rich Low_complexity Low_complexity 3 64 0 1 860 465 19 0 0 chr4 36079644 36079698 -119550422 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1 860 207 0 0 0 chr4 36079980 36080003 -119550117 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 860 3628 42 5 2 chr4 36080909 36081344 -119548776 - RLTR10C LTR ERVK 0 436 1 1 860 6855 22 0 58 chr4 36081344 36082211 -119547909 - MMERVK10C-int LTR ERVK 0 7581 6765 1 860 1366 259 0 33 chr4 36082558 36082861 -119547259 + RMER1B Other Other 393 685 -381 1 860 480 206 43 11 chr4 36083819 36083912 -119546208 + B4 SINE B4 128 223 -69 1 860 21 57 0 0 chr4 36084586 36084621 -119545499 + AT_rich Low_complexity Low_complexity 1 35 0 1 860 27781 96 53 25 chr4 36084713 36089973 -119540147 + L1Md_F2 LINE L1 178 5585 -298 1 860 7315 79 8 8 chr4 36089974 36090970 -119539150 + L1Md_F2 LINE L1 5587 6582 0 1 860 312 158 0 0 chr4 36091383 36091440 -119538680 + GA-rich Low_complexity Low_complexity 2 58 0 1 860 977 244 106 35 chr4 36093074 36093436 -119536684 + Lx7 LINE L1 7109 7540 -156 1 860 1156 120 17 6 chr4 36093436 36093612 -119536508 - B2_Mm2 SINE B2 -16 179 2 1 860 977 246 20 47 chr4 36093612 36093767 -119536353 + Lx7 LINE L1 7541 7694 -2 1 860 23 0 0 0 chr4 36094430 36094453 -119535667 + AT_rich Low_complexity Low_complexity 1 23 0 1 860 26 64 0 0 chr4 36094477 36094524 -119535596 + AT_rich Low_complexity Low_complexity 1 47 0 1 860 2822 136 74 11 chr4 36095142 36095669 -119534451 - RMER6A LTR ERVK 0 756 197 1 860 250 24 23 45 chr4 36096278 36096322 -119533798 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 860 1145 77 0 0 chr4 36096322 36096465 -119533655 - B1_Mm SINE Alu -2 145 3 1 860 384 22 0 0 chr4 36096533 36096578 -119533542 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 860 378 0 0 0 chr4 36096578 36096619 -119533501 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 860 241 252 8 8 chr4 36096619 36096739 -119533381 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 860 321 256 122 0 chr4 36097530 36097620 -119532500 - RMER4B LTR ERVK -20 565 465 1 860 501 62 0 0 chr4 36097740 36097805 -119532315 + (TAAA)n Simple_repeat Simple_repeat 4 68 0 1 860 232 362 39 74 chr4 36098859 36099062 -119531058 + MIRb SINE MIR 37 232 -36 1 860 22 0 0 0 chr4 36100998 36101020 -119529100 + AT_rich Low_complexity Low_complexity 1 22 0 1 860 22 56 0 0 chr4 36101086 36101122 -119528998 + AT_rich Low_complexity Low_complexity 1 36 0 1 860 522 83 0 0 chr4 36101564 36101636 -119528484 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 860 794 84 17 0 chr4 36101636 36101755 -119528365 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 1 860 522 114 0 0 chr4 36102630 36102709 -119527411 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 860 245 81 0 26 chr4 36102709 36102747 -119527373 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1 860 363 60 0 0 chr4 36103119 36103169 -119526951 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 860 258 331 28 49 chr4 36103560 36103703 -119526417 + B1F SINE Alu 10 149 0 1 860 21 0 0 0 chr4 36105583 36105604 -119524516 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 281 48 48 0 chr4 36106375 36106417 -119523703 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 860 373 318 6 27 chr4 36106957 36107121 -119522999 - L1ME3 LINE L1 -7 6172 6010 1 860 2221 240 24 30 chr4 36107583 36108119 -119522001 - MT2A LTR ERVL 0 533 1 1 860 271 339 73 126 chr4 36108650 36108856 -119521264 - MER21B LTR ERV1 -629 234 40 1 860 7144 136 11 3 chr4 36108869 36110008 -119520112 - L1_Mus3 LINE L1 0 5883 4736 1 860 4921 98 10 8 chr4 36110008 36110725 -119519395 + L1_Mus3 LINE L1 5921 6638 0 1 860 429 44 44 0 chr4 36111126 36111194 -119518926 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 860 4099 80 25 4 chr4 36111460 36112023 -119518097 - L1_Mus3 LINE L1 -12 6626 6052 1 860 306 0 0 0 chr4 36112191 36112225 -119517895 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 860 340 320 15 62 chr4 36112287 36112417 -119517703 + B4A SINE B4 7 130 -162 1 860 828 198 52 10 chr4 36113465 36113659 -119516461 + RMER1B Other Other 865 1066 0 1 860 273 346 46 42 chr4 36113703 36113920 -119516200 + Charlie16a DNA MER1_type 4 221 -121 1 860 242 333 25 42 chr4 36114693 36114812 -119515308 + MLT1A1 LTR MaLR 292 408 0 1 860 192 290 145 0 chr4 36114947 36115009 -119515111 - L2a LINE L2 -339 3087 3017 1 860 639 0 0 0 chr4 36115287 36115358 -119514762 + (TTTTC)n Simple_repeat Simple_repeat 1 71 0 1 860 224 265 28 42 chr4 36115364 36115435 -119514685 - ID4 SINE ID -10 73 4 1 860 364 307 0 102 chr4 36115447 36115574 -119514546 - PB1 SINE Alu -1 126 13 1 860 29 0 0 0 chr4 36116068 36116097 -119514023 + AT_rich Low_complexity Low_complexity 1 29 0 1 860 452 345 29 20 chr4 36116216 36116420 -119513700 + MIRb SINE MIR 63 268 0 1 860 269 306 102 60 chr4 36117067 36117230 -119512890 - ORR1E LTR MaLR -168 191 22 1 860 492 312 213 6 chr4 36117230 36117539 -119512581 - MTE2b LTR MaLR -2 377 5 1 860 209 286 51 13 chr4 36117645 36117723 -119512397 - L4 LINE RTE -630 1399 1319 1 860 927 27 0 0 chr4 36117951 36118061 -119512059 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 860 494 256 128 0 chr4 36118064 36118189 -119511931 - B3A SINE B2 -57 141 1 1 860 21 0 0 0 chr4 36119052 36119073 -119511047 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 382 353 83 6 chr4 36119590 36119758 -119510362 + MER63A DNA AcHobo 6 186 -24 1 860 481 171 34 0 chr4 36120161 36120249 -119509871 + Lx3_Mus LINE L1 5492 5582 -304 1 860 4849 59 2 0 chr4 36120255 36120863 -119509257 - L1_Mur1 LINE L1 -26 5860 5252 1 860 191 36 36 0 chr4 36120863 36120891 -119509229 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 860 6640 76 81 64 chr4 36120908 36120942 -119509178 + Lx3_Mus LINE L1 5875 5908 -1101 1 860 330 67 0 0 chr4 36120942 36120987 -119509133 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 860 6640 76 81 64 chr4 36120987 36122051 -119508069 + Lx3_Mus LINE L1 5909 6991 -18 1 860 3436 83 21 2 chr4 36122052 36122524 -119507596 + L1_Mus1 LINE L1 6086 6566 -1 1 860 5303 199 101 10 chr4 36122583 36123020 -119507100 + Lx2B LINE L1 5558 6028 -972 1 860 372 43 0 0 chr4 36123020 36123066 -119507054 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 1 860 5303 204 98 16 chr4 36123066 36123267 -119506853 + Lx2B LINE L1 6029 6241 -759 1 860 2069 108 69 0 chr4 36123267 36123573 -119506547 - ORR1A2 LTR MaLR 0 327 1 1 860 5303 204 98 16 chr4 36123573 36124248 -119505872 + Lx2B LINE L1 6242 6986 -14 1 860 252 0 0 0 chr4 36125024 36125052 -119505068 + (T)n Simple_repeat Simple_repeat 1 28 0 1 860 198 346 12 12 chr4 36126038 36126120 -119504000 + L2c LINE L2 3289 3370 -17 1 860 456 19 0 0 chr4 36127257 36127310 -119502810 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 860 206 135 39 0 chr4 36127311 36127363 -119502757 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 1 860 201 147 0 0 chr4 36127994 36128028 -119502092 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 860 243 154 0 0 chr4 36128386 36128425 -119501695 - ID2 SINE ID -40 43 5 2 860 854 318 68 15 chr4 36128539 36128877 -119501243 + MTEa LTR MaLR 24 379 0 2 860 379 303 62 79 chr4 36128877 36129155 -119500965 - MTEb LTR MaLR -33 346 58 2 860 3949 132 30 5 chr4 36129618 36130244 -119499876 + Lx2 LINE L1 6354 6995 -2 2 860 25 0 0 0 chr4 36131993 36132018 -119498102 + AT_rich Low_complexity Low_complexity 1 25 0 2 860 610 289 153 11 chr4 36132034 36132387 -119497733 + L1MA6 LINE L1 5842 6244 -56 2 860 672 64 0 0 chr4 36132390 36132484 -119497636 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 860 228 281 0 0 chr4 36132905 36132969 -119497151 + RSINE1 SINE B4 39 102 -63 2 860 288 0 0 0 chr4 36133245 36133277 -119496843 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 860 323 202 0 11 chr4 36134110 36134200 -119495920 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 860 1292 308 86 8 chr4 36134546 36135139 -119494981 - L1MB3 LINE L1 -61 6122 5484 2 860 516 175 0 0 chr4 36135391 36135488 -119494632 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 860 357 24 0 0 chr4 36135551 36135593 -119494527 + (CAAT)n Simple_repeat Simple_repeat 3 44 0 2 860 823 225 79 28 chr4 36137576 36137791 -119492329 + URR1A DNA MER1_type 1 226 0 2 860 1076 58 0 19 chr4 36138105 36138262 -119491858 - L1Md_F2 LINE L1 -1 6581 6428 2 860 3202 75 0 2 chr4 36138263 36138680 -119491440 + L1_Mm LINE L1 5468 5883 0 2 860 1993 133 15 12 chr4 36138913 36138966 -119491154 - ORR1A4 LTR MaLR 0 329 276 2 860 3077 41 20 8 chr4 36138966 36139362 -119490758 - L1Md_F2 LINE L1 0 6582 6182 2 860 1993 133 15 12 chr4 36139362 36139636 -119490484 - ORR1A4 LTR MaLR -54 275 2 2 860 378 0 0 0 chr4 36140379 36140421 -119489699 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 860 21 0 0 0 chr4 36140784 36140805 -119489315 + AT_rich Low_complexity Low_complexity 1 21 0 2 860 573 15 0 0 chr4 36140982 36141048 -119489072 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 860 1203 158 35 13 chr4 36143206 36143437 -119486683 + Lx LINE L1 6415 6650 -4 2 860 400 369 124 31 chr4 36143635 36144055 -119486065 + MLT1H LTR MaLR 88 546 -3 2 860 484 309 69 66 chr4 36144563 36144851 -119485269 + B4 SINE B4 4 292 0 2 860 490 261 3 2 chr4 36145808 36145922 -119484198 + MTD LTR MaLR 265 405 -14 2 860 1060 223 27 60 chr4 36148751 36149051 -119481069 + RMER1C Other Other 1049 1338 -4 2 860 576 42 0 0 chr4 36149396 36149467 -119480653 + (GGAA)n Simple_repeat Simple_repeat 1 71 0 2 860 962 282 112 29 chr4 36151300 36151756 -119478364 + RMER5 LTR ERV1 41 534 0 2 860 501 17 0 0 chr4 36152199 36152257 -119477863 + (TTC)n Simple_repeat Simple_repeat 3 60 0 2 860 3697 39 5 0 chr4 36152257 36152690 -119477430 + RLTR10C LTR ERVK 2 436 0 2 860 1499 39 0 0 chr4 36152690 36152870 -119477250 + MMERVK10C-int LTR ERVK 1 180 -7401 2 860 242 191 0 0 chr4 36152870 36152912 -119477208 + RLTR27 LTR ERVK 231 272 -37 2 860 420 0 0 0 chr4 36152912 36152958 -119477162 + MMERVK10C-int LTR ERVK 222 267 -7314 2 860 297 174 11 44 chr4 36153040 36153130 -119476990 + A-rich Low_complexity Low_complexity 3 89 0 2 860 355 67 0 0 chr4 36153130 36153175 -119476945 + RLTR10-int LTR ERVK 93 137 -6405 2 860 1933 17 9 4 chr4 36153178 36153411 -119476709 + RLTR10-int LTR ERVK 652 885 -1102 2 860 19308 38 0 1 chr4 36153380 36155680 -119474440 + MMERVK10C-int LTR ERVK 3512 5810 -1771 2 860 660 23 81 0 chr4 36155692 36155779 -119474341 + RLTR10B LTR ERVK 199 292 0 2 860 1167 109 0 0 chr4 36155781 36155955 -119474165 + (TCC)n Simple_repeat Simple_repeat 2 175 0 2 860 1045 84 7 7 chr4 36155955 36156099 -119474021 - B1_Mm SINE Alu -2 145 2 2 860 3118 129 2 22 chr4 36156819 36157317 -119472803 + Lx3A LINE L1 6492 6979 -2 2 860 23 0 0 0 chr4 36158161 36158184 -119471936 + AT_rich Low_complexity Low_complexity 1 23 0 2 860 1614 205 108 3 chr4 36158232 36158613 -119471507 + MTC LTR MaLR 1 421 0 2 860 422 324 84 39 chr4 36159564 36159718 -119470402 - RSINE1 SINE B4 -2 163 3 2 860 870 255 9 66 chr4 36159832 36160059 -119470061 + B3 SINE B2 1 214 -2 2 860 1284 277 10 13 chr4 36160063 36160363 -119469757 - ORR1C2 LTR MaLR 0 384 86 2 860 3697 102 11 13 chr4 36160370 36160919 -119469201 - L1_Mus4 LINE L1 -6 6630 6083 2 860 567 0 0 0 chr4 36161238 36161301 -119468819 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 860 315 49 0 0 chr4 36161301 36161341 -119468779 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 860 27 0 0 0 chr4 36161599 36161626 -119468494 + AT_rich Low_complexity Low_complexity 1 27 0 2 860 189 74 0 0 chr4 36162068 36162095 -119468025 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 860 219 181 101 77 chr4 36166113 36166211 -119463909 + MIR SINE MIR 46 138 -130 2 860 261 315 90 27 chr4 36166857 36166968 -119463152 + MLT1A0 LTR MaLR 35 152 -213 2 860 237 65 0 0 chr4 36167193 36167224 -119462896 + (T)n Simple_repeat Simple_repeat 1 31 0 2 860 6781 82 4 38 chr4 36167258 36169687 -119460433 - L1Md_F2 LINE L1 0 6582 5698 2 860 804 290 8 29 chr4 36170444 36170682 -119459438 + Lx6 LINE L1 7228 7460 0 2 860 212 274 139 39 chr4 36170793 36170922 -119459198 + L3 LINE CR1 3270 3411 -1078 2 860 289 306 27 129 chr4 36170949 36171174 -119458946 + L3 LINE CR1 3506 3707 -782 2 860 875 245 25 0 chr4 36171506 36171702 -119458418 + B3 SINE B2 1 201 -15 2 860 24 0 0 0 chr4 36171703 36171727 -119458393 + AT_rich Low_complexity Low_complexity 1 24 0 2 860 24 0 0 0 chr4 36173197 36173221 -119456899 + AT_rich Low_complexity Low_complexity 1 24 0 2 860 487 321 65 25 chr4 36173954 36174155 -119455965 + B4A SINE B4 4 212 -80 2 860 327 96 0 0 chr4 36174206 36174258 -119455862 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 860 23 33 0 0 chr4 36174536 36174566 -119455554 + AT_rich Low_complexity Low_complexity 1 30 0 2 860 297 258 0 0 chr4 36175230 36175350 -119454770 + CT-rich Low_complexity Low_complexity 1 120 0 2 861 264 135 75 28 chr4 36176318 36176425 -119453695 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 861 372 0 88 0 chr4 36176706 36176774 -119453346 + (TTG)n Simple_repeat Simple_repeat 2 75 0 2 861 1001 82 0 0 chr4 36176774 36176908 -119453212 - B1_Mus1 SINE Alu -8 140 7 2 861 405 0 0 0 chr4 36177327 36177372 -119452748 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 861 1192 167 0 0 chr4 36177439 36177649 -119452471 + Lx2 LINE L1 6788 6997 0 2 861 21 36 0 0 chr4 36178527 36178555 -119451565 + AT_rich Low_complexity Low_complexity 1 28 0 2 861 27 49 0 0 chr4 36180804 36180845 -119449275 + AT_rich Low_complexity Low_complexity 1 41 0 2 861 4713 147 74 8 chr4 36181581 36182332 -119447788 + L1Md_F LINE L1 476 1275 -4608 2 861 2605 51 0 12 chr4 36182332 36182654 -119447466 + L1Md_F3 LINE L1 6237 6558 -26 2 861 378 0 0 0 chr4 36182654 36182696 -119447424 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 861 2605 51 0 12 chr4 36182696 36182711 -119447409 + L1Md_F3 LINE L1 6559 6570 -14 2 861 4713 88 3 11 chr4 36182711 36183343 -119446777 + L1Md_F LINE L1 1276 1906 -3977 2 861 4276 79 15 8 chr4 36183346 36183932 -119446188 + L1Md_F2 LINE L1 5993 6582 0 2 861 1150 295 244 23 chr4 36184270 36184922 -119445198 - Lx6 LINE L1 0 7460 6665 2 861 915 133 13 0 chr4 36184926 36185076 -119445044 + L1_Mur3 LINE L1 4449 4600 -1280 2 861 1790 217 40 8 chr4 36185615 36185992 -119444128 + Lx2B LINE L1 6606 6994 -6 2 861 3278 62 7 0 chr4 36186072 36186494 -119443626 - L1Md_F2 LINE L1 -3 6579 6155 2 861 390 42 0 0 chr4 36186542 36186590 -119443530 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 861 418 267 38 0 chr4 36186678 36186783 -119443337 - Lx5 LINE L1 -165 6885 6777 2 861 1165 208 102 4 chr4 36186735 36186991 -119443129 + Lx5 LINE L1 6770 7050 0 2 861 1719 268 71 31 chr4 36187401 36188363 -119441757 + L1MA6 LINE L1 4334 5333 -810 2 861 759 300 87 88 chr4 36188457 36188673 -119441447 + L1MA6 LINE L1 5469 5667 -633 2 861 570 311 42 28 chr4 36188673 36188885 -119441235 + B3 SINE B2 2 216 0 2 861 759 300 87 88 chr4 36188885 36189489 -119440631 + L1MA6 LINE L1 5668 6288 -12 2 861 285 207 56 32 chr4 36189532 36189657 -119440463 - Lx9 LINE L1 0 7644 7517 2 861 492 99 0 0 chr4 36189658 36189729 -119440391 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 861 27 49 0 0 chr4 36189778 36189819 -119440301 + AT_rich Low_complexity Low_complexity 1 41 0 2 861 2497 239 181 10 chr4 36189819 36190629 -119439491 + Lx9 LINE L1 6413 7361 -283 2 861 265 234 119 18 chr4 36190633 36190669 -119439451 + Lx9 LINE L1 7517 7552 -92 2 861 956 108 7 0 chr4 36190669 36190817 -119439303 + (GGAA)n Simple_repeat Simple_repeat 3 151 0 2 861 265 234 119 18 chr4 36190817 36190889 -119439231 + Lx9 LINE L1 7553 7636 -8 2 861 30 59 0 0 chr4 36192458 36192509 -119437611 + AT_rich Low_complexity Low_complexity 1 51 0 2 861 207 69 0 0 chr4 36192609 36192638 -119437482 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 861 531 132 37 9 chr4 36193423 36193530 -119436590 - Lx LINE L1 -6 6648 6539 2 861 939 141 6 50 chr4 36193532 36193711 -119436409 - L1_Mur2 LINE L1 -426 5451 5281 2 861 21 0 0 0 chr4 36194196 36194217 -119435903 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 450 0 0 0 chr4 36194441 36194491 -119435629 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 861 434 103 0 13 chr4 36194493 36194572 -119435548 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 861 470 309 154 55 chr4 36194643 36195349 -119434771 + L1M4c LINE L1 1125 1900 -4484 2 861 1679 200 138 5 chr4 36196618 36197218 -119432902 + L1Md_A LINE L1 892 1571 -4306 2 861 17740 149 29 3 chr4 36197227 36200196 -119429924 + L1VL2 LINE L1 411 3476 -2407 2 861 255 31 0 0 chr4 36200196 36200228 -119429892 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 861 17740 153 31 1 chr4 36200228 36201277 -119428843 + L1VL2 LINE L1 3477 4539 -1344 2 861 2449 161 108 16 chr4 36201271 36201831 -119428289 + L1Md_A LINE L1 2679 3292 -2585 2 861 1350 58 0 0 chr4 36201831 36202005 -119428115 - L1Md_T LINE L1 0 6582 6409 2 861 2449 28 0 0 chr4 36202005 36202255 -119427865 + L1Md_A LINE L1 3293 3304 -2573 2 861 2149 183 37 4 chr4 36202267 36202760 -119427360 + L1_Mur2 LINE L1 3265 3768 -2109 2 861 508 271 21 63 chr4 36202785 36202974 -119427146 + Lx9 LINE L1 7006 7186 -458 2 861 24 0 0 0 chr4 36203277 36203301 -119426819 + AT_rich Low_complexity Low_complexity 1 24 0 3 861 1169 68 0 0 chr4 36203577 36203724 -119426396 + B1_Mus2 SINE Alu 1 147 0 3 861 216 191 0 0 chr4 36203724 36203771 -119426349 + A-rich Low_complexity Low_complexity 1 47 0 3 861 222 296 139 14 chr4 36203895 36203967 -119426153 + RSINE1 SINE B4 2 82 -83 3 861 975 255 40 43 chr4 36203978 36204306 -119425814 - Lx7 LINE L1 -521 7175 6849 3 861 323 304 0 21 chr4 36204295 36204314 -119425806 - Lx6 LINE L1 -565 6895 6878 3 861 417 20 0 0 chr4 36204314 36204364 -119425756 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 861 323 304 0 21 chr4 36204364 36204438 -119425682 - Lx6 LINE L1 -583 6877 6804 3 861 42 0 0 0 chr4 36205780 36205822 -119424298 + AT_rich Low_complexity Low_complexity 1 42 0 3 861 441 259 43 8 chr4 36207278 36207395 -119422725 - B1_Mur2 SINE Alu -8 141 21 3 861 1080 96 0 0 chr4 36207715 36207861 -119422259 - B1_Mus2 SINE Alu 0 147 2 3 861 23 33 0 0 chr4 36208377 36208407 -119421713 + AT_rich Low_complexity Low_complexity 1 30 0 3 861 314 369 68 72 chr4 36209913 36210164 -119419956 - L3 LINE CR1 -235 4254 4005 3 861 499 248 32 32 chr4 36210775 36210929 -119419191 - RLTR11B LTR ERVK -16 437 284 3 861 422 280 106 62 chr4 36211836 36212015 -119418105 - B3A SINE B2 -1 197 11 3 861 242 182 18 18 chr4 36212034 36212090 -119418030 + CT-rich Low_complexity Low_complexity 1 56 0 3 861 3122 75 30 2 chr4 36212175 36212601 -119417519 - L1_Mus2 LINE L1 0 6566 6129 3 861 633 309 53 23 chr4 36212906 36213168 -119416952 - Lx8 LINE L1 -493 6980 6711 3 861 1636 140 29 4 chr4 36213161 36213440 -119416680 + Lx3B LINE L1 6444 6729 -244 3 861 671 301 42 8 chr4 36213515 36213756 -119416364 - Lx8 LINE L1 -860 6613 6365 3 861 492 264 61 54 chr4 36214062 36214209 -119415911 - RCHARR1 DNA MER1_type -740 234 87 3 861 553 281 294 30 chr4 36214209 36214506 -119415614 - MTE2b LTR MaLR -2 377 3 3 861 245 356 23 0 chr4 36214507 36214594 -119415526 - RCHARR1 DNA MER1_type -881 93 5 3 861 2961 49 0 0 chr4 36214671 36215039 -119415081 + L1Md_T LINE L1 6215 6582 0 3 861 1246 291 5 38 chr4 36216190 36216558 -119413562 + Lx6 LINE L1 7079 7434 -26 3 861 418 293 73 29 chr4 36216597 36216734 -119413386 + B1F2 SINE Alu 6 148 -1 3 861 286 243 28 35 chr4 36217465 36217610 -119412510 + GA-rich Low_complexity Low_complexity 3 146 0 3 861 7404 69 3 17 chr4 36217611 36218614 -119411506 + L1Md_Gf LINE L1 154 1142 -5380 3 861 13500 16 1 0 chr4 36221332 36222965 -119407155 + L1Md_T LINE L1 3952 5586 -297 3 861 8492 32 0 0 chr4 36222965 36223961 -119406159 + L1Md_T LINE L1 5587 6582 0 3 861 317 303 0 36 chr4 36224084 36224221 -119405899 + GA-rich Low_complexity Low_complexity 2 133 0 3 861 481 30 15 15 chr4 36225272 36225340 -119404780 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 861 1080 64 0 54 chr4 36225342 36225491 -119404629 - B1_Mus1 SINE Alu -5 143 3 3 861 308 279 0 12 chr4 36225935 36226015 -119404105 + ID4 SINE ID 2 80 -3 3 861 627 242 30 9 chr4 36226990 36227167 -119402953 + B3 SINE B2 4 193 0 3 861 7927 50 1 1 chr4 36227551 36228530 -119401590 + L1Md_F2 LINE L1 5593 6571 -11 3 861 23 0 0 0 chr4 36228545 36228568 -119401552 + AT_rich Low_complexity Low_complexity 1 23 0 3 861 25 0 0 0 chr4 36228657 36228682 -119401438 + AT_rich Low_complexity Low_complexity 1 25 0 3 861 195 239 0 0 chr4 36230098 36230165 -119399955 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 861 1671 178 79 12 chr4 36230612 36230942 -119399178 + ORR1B1 LTR MaLR 41 392 -2 3 861 1089 89 0 22 chr4 36232102 36232286 -119397834 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 861 420 357 38 0 chr4 36232943 36233100 -119397020 + MLT1B LTR MaLR 221 383 -7 3 861 391 218 7 7 chr4 36233346 36233489 -119396631 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 861 438 308 104 8 chr4 36233721 36233855 -119396265 - B1_Mur1 SINE Alu -2 147 1 3 861 1107 73 0 0 chr4 36233930 36234067 -119396053 - B1_Mm SINE Alu -10 137 1 3 861 33 25 0 0 chr4 36234192 36234232 -119395888 + AT_rich Low_complexity Low_complexity 1 40 0 3 861 570 54 0 0 chr4 36234241 36234315 -119395805 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 861 492 298 89 30 chr4 36234317 36234452 -119395668 - RSINE1 SINE B4 -20 145 3 3 861 500 308 150 12 chr4 36236586 36236826 -119393294 + MER34 LTR ERV1 12 284 -287 3 861 207 0 0 0 chr4 36237468 36237491 -119392629 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 861 1172 48 21 0 chr4 36237498 36237643 -119392477 - B1_Mus1 SINE Alu 0 148 1 3 861 340 49 32 32 chr4 36238313 36238376 -119391744 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 861 302 287 136 29 chr4 36238499 36238639 -119391481 + RLTR11B LTR ERVK 284 438 -15 3 861 361 348 70 33 chr4 36238713 36238954 -119391166 - ID_B1 SINE B4 -28 264 8 3 861 306 343 14 42 chr4 36239555 36239698 -119390422 + ID_B1 SINE B4 60 198 -26 3 861 570 208 25 16 chr4 36239584 36239706 -119390414 + B1_Mus1 SINE Alu 5 127 -21 3 861 396 0 0 0 chr4 36239712 36239756 -119390364 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 861 225 0 0 0 chr4 36239763 36239788 -119390332 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 861 229 120 19 39 chr4 36239791 36239843 -119390277 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 3 861 1031 232 102 47 chr4 36241904 36242248 -119387872 - RMER10A LTR ERVL -68 374 12 3 861 762 258 42 87 chr4 36242258 36242593 -119387527 - RMER10A LTR ERVL 0 442 123 3 861 188 191 42 21 chr4 36243170 36243233 -119386887 + MIR SINE MIR 111 183 -93 3 861 528 282 0 0 chr4 36244020 36244137 -119385983 + B4A SINE B4 2 118 -174 3 861 387 0 0 0 chr4 36244648 36244691 -119385429 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 861 234 81 0 0 chr4 36244695 36244732 -119385388 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 861 297 205 128 0 chr4 36245680 36245758 -119384362 + RLTR14-int LTR ERV1 828 915 -4402 3 861 417 289 47 28 chr4 36247274 36247488 -119382632 + MuRRS-int LTR ERV1 2665 2882 -1808 3 861 192 40 0 0 chr4 36247626 36247651 -119382469 + (T)n Simple_repeat Simple_repeat 1 25 0 3 861 361 299 17 28 chr4 36247947 36248126 -119381994 + MuRRS-int LTR ERV1 3279 3455 -1235 3 861 358 318 58 25 chr4 36248482 36248829 -119381291 + MuRRS-int LTR ERV1 4087 4471 -3307 3 861 839 34 16 73 chr4 36249288 36249479 -119380641 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 861 349 319 34 34 chr4 36250306 36250543 -119379577 + MuRRS-int LTR ERV1 4900 5136 -181 3 861 1252 186 80 80 chr4 36250672 36251022 -119379098 - RMER6C LTR ERVK -12 678 329 3 861 1082 233 66 40 chr4 36250992 36251341 -119378779 - RMER6C LTR ERVK -237 453 96 3 861 234 0 0 0 chr4 36252709 36252735 -119377385 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 861 598 203 230 57 chr4 36253741 36253950 -119376170 + ORR1B2 LTR MaLR 1 283 -84 3 861 654 361 13 16 chr4 36253954 36254331 -119375789 + Lx9 LINE L1 6579 6954 -690 3 861 1511 138 83 0 chr4 36254336 36254590 -119375530 + ORR1A2 LTR MaLR 16 290 -37 3 861 258 340 10 21 chr4 36255273 36255369 -119374751 + MLT1C LTR MaLR 373 467 0 3 861 268 243 27 0 chr4 36256013 36256087 -119374033 + L1MEe LINE L1 163 238 -4616 3 861 414 0 0 0 chr4 36256316 36256362 -119373758 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 861 343 345 34 39 chr4 36256372 36256550 -119373570 - B4 SINE B4 -115 177 1 3 861 431 325 31 25 chr4 36256923 36257084 -119373036 - MLT1A1 LTR MaLR -216 192 31 3 861 1920 161 86 92 chr4 36257588 36257960 -119372160 - BGLII_B LTR ERVK 0 441 69 3 861 1151 65 0 0 chr4 36257960 36258099 -119372021 - B1_Mm SINE Alu -8 139 1 3 861 1920 161 86 92 chr4 36258099 36258170 -119371950 - BGLII_B LTR ERVK -373 68 1 3 861 1021 252 25 58 chr4 36260028 36260384 -119369736 - MTC-int LTR MaLR -817 441 8 3 861 675 168 155 20 chr4 36261204 36261404 -119368716 + Lx7 LINE L1 7460 7686 -10 3 861 489 34 0 0 chr4 36261405 36261464 -119368656 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 861 493 192 35 88 chr4 36261503 36261617 -119368503 - B1_Mur3 SINE Alu -41 108 1 3 861 275 222 123 41 chr4 36261671 36261793 -119368327 - ORR1D2 LTR MaLR -2 368 237 3 861 473 252 189 92 chr4 36261756 36261893 -119368227 - RMER10A LTR ERVL -24 418 299 3 861 1036 62 14 0 chr4 36261893 36262038 -119368082 + (GA)n Simple_repeat Simple_repeat 1 147 0 3 861 473 252 189 92 chr4 36262038 36262147 -119367973 - RMER10A LTR ERVL -144 298 152 3 861 1065 96 0 0 chr4 36262147 36262303 -119367817 + (GGGAA)n Simple_repeat Simple_repeat 1 156 0 3 861 473 252 189 92 chr4 36262303 36262435 -119367685 - RMER10A LTR ERVL -291 151 3 3 861 1146 282 27 73 chr4 36262435 36262579 -119367541 - MTD LTR MaLR -74 345 213 3 861 735 71 0 0 chr4 36262579 36262677 -119367443 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 3 861 1146 282 27 73 chr4 36262677 36262894 -119367226 - MTD LTR MaLR -207 212 1 3 861 252 346 114 8 chr4 36264626 36264757 -119365363 + MER47B DNA MER2_type 101 245 -173 3 861 477 0 0 0 chr4 36265133 36265186 -119364934 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 861 21 0 0 0 chr4 36265390 36265411 -119364709 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 397 204 11 64 chr4 36266383 36266501 -119363619 + B1_Mur1 SINE Alu 13 148 -1 3 861 303 301 144 6 chr4 36268053 36268227 -119361893 + B3A SINE B2 1 198 0 3 861 221 136 0 48 chr4 36268227 36268289 -119361831 + A-rich Low_complexity Low_complexity 1 59 0 3 861 21 0 0 0 chr4 36268756 36268777 -119361343 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 195 129 0 0 chr4 36268831 36268862 -119361258 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 861 5774 159 42 20 chr4 36268863 36269974 -119360146 - Lx3C LINE L1 -3 6973 5838 3 861 328 339 110 48 chr4 36270743 36271099 -119359021 - L1MEg LINE L1 -4647 1437 1060 3 861 29 70 0 0 chr4 36271301 36271358 -119358762 + AT_rich Low_complexity Low_complexity 1 57 0 3 861 282 329 71 7 chr4 36271629 36271770 -119358350 + MLT2D LTR ERVL 76 225 -331 3 861 186 191 0 0 chr4 36271880 36271927 -119358193 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 861 283 303 51 103 chr4 36272092 36272255 -119357865 + MLT2D LTR ERVL 217 372 -42 3 861 324 0 0 0 chr4 36272255 36272291 -119357829 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 4 861 283 303 51 103 chr4 36272291 36272322 -119357798 + MLT2D LTR ERVL 373 401 -13 3 861 430 345 107 34 chr4 36272798 36272975 -119357145 + B3A SINE B2 2 191 -7 4 861 1012 124 0 0 chr4 36273819 36273964 -119356156 + B1_Mm SINE Alu 3 147 0 4 861 567 122 0 0 chr4 36273991 36274081 -119356039 + Lx5 LINE L1 5708 5797 -1253 4 861 11348 105 15 27 chr4 36274082 36276582 -119353538 + L1Md_A LINE L1 416 2894 -2989 4 861 4773 187 15 4 chr4 36276580 36277514 -119352606 + Lx4B LINE L1 6078 7021 -37 4 861 180 0 0 0 chr4 36278041 36278061 -119352059 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 861 591 186 82 33 chr4 36278067 36278189 -119351931 - B1_Mur3 SINE Alu -17 132 5 4 861 240 376 29 7 chr4 36278290 36278417 -119351703 - MIRb SINE MIR -119 149 21 4 861 274 345 55 0 chr4 36279449 36279559 -119350561 + PB1D10 SINE Alu 1 116 -1 4 861 22 0 0 0 chr4 36279734 36279756 -119350364 + AT_rich Low_complexity Low_complexity 1 22 0 4 861 23 33 0 0 chr4 36279835 36279865 -119350255 + AT_rich Low_complexity Low_complexity 1 30 0 4 861 396 59 0 0 chr4 36280191 36280242 -119349878 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 861 204 172 0 0 chr4 36281145 36281203 -119348917 + A-rich Low_complexity Low_complexity 1 58 0 4 861 1782 193 67 3 chr4 36281277 36281620 -119348500 - Lx5 LINE L1 -3 7047 6683 4 861 4064 171 53 5 chr4 36281620 36282429 -119347691 + L1_Mur2 LINE L1 4833 5680 -197 4 861 266 295 44 33 chr4 36282999 36283181 -119346939 + L1M2a LINE L1 2002 2185 -4983 4 861 509 179 127 8 chr4 36283337 36283455 -119346665 + ORR1D1 LTR MaLR 236 367 -7 4 861 6484 53 22 0 chr4 36283518 36284343 -119345777 + L1Md_F2 LINE L1 4744 5586 -297 4 861 8065 41 2 3 chr4 36284343 36285328 -119344792 + L1Md_F2 LINE L1 5587 6570 -12 4 861 261 244 58 37 chr4 36285328 36285524 -119344596 + L1M2a LINE L1 2503 2695 -4473 4 861 236 188 0 0 chr4 36285589 36285637 -119344483 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 861 228 302 86 13 chr4 36285765 36285916 -119344204 + L1M4c LINE L1 1584 1745 -4639 4 861 25 0 0 0 chr4 36286076 36286101 -119344019 + AT_rich Low_complexity Low_complexity 1 25 0 4 861 521 211 0 0 chr4 36286104 36286199 -119343921 + B1_Mur3 SINE Alu 39 133 -16 4 861 1060 92 1 9 chr4 36286213 36286366 -119343754 - B1_Mus1 SINE Alu -102 209 6 4 861 195 170 0 0 chr4 36286384 36286431 -119343689 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 861 1265 284 36 17 chr4 36286494 36286852 -119343268 - ORR1D2 LTR MaLR -2 368 4 4 861 238 26 51 0 chr4 36286865 36286904 -119343216 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 861 257 302 10 0 chr4 36287168 36287264 -119342856 + L1M4c LINE L1 2321 2417 -3967 4 861 279 0 0 0 chr4 36287658 36287689 -119342431 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 861 444 82 0 0 chr4 36287689 36287749 -119342371 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 861 212 211 14 0 chr4 36289267 36289338 -119340782 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 861 517 360 91 13 chr4 36289353 36289584 -119340536 - B4 SINE B4 0 292 44 4 861 387 184 0 0 chr4 36290332 36290419 -119339701 + GA-rich Low_complexity Low_complexity 2 88 0 4 861 182 191 156 73 chr4 36291441 36291537 -119338583 - L2 LINE L2 -1625 1794 1691 4 861 1708 157 127 0 chr4 36291575 36291874 -119338246 - Lx3C LINE L1 -2 6974 6638 4 861 186 143 0 0 chr4 36292278 36292313 -119337807 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 4 861 206 325 73 0 chr4 36293113 36293208 -119336912 - L2c LINE L2 -39 3336 3230 4 861 396 0 0 0 chr4 36293830 36293874 -119336246 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 861 685 326 103 28 chr4 36294917 36295696 -119334424 + L1MA4A LINE L1 4999 5885 -418 4 861 512 124 9 0 chr4 36296309 36296414 -119333706 + (TCTA)n Simple_repeat Simple_repeat 2 107 0 4 861 443 307 39 8 chr4 36297305 36297433 -119332687 + ID_B1 SINE B4 85 216 -8 4 861 8106 27 0 3 chr4 36298611 36299543 -119330577 - RLTR13B3 LTR ERVK 0 929 1 4 861 1583 161 65 0 chr4 36299821 36300126 -119329994 + RMER1B Other Other 742 1055 -11 4 861 681 223 29 0 chr4 36300927 36301066 -119329054 + B1_Mur4 SINE Alu 2 144 -6 4 861 267 176 11 21 chr4 36301067 36301160 -119328960 + (CAAA)n Simple_repeat Simple_repeat 2 93 0 4 861 984 75 0 0 chr4 36301364 36301498 -119328622 + (TG)n Simple_repeat Simple_repeat 1 134 0 4 861 396 0 0 0 chr4 36301911 36301955 -119328165 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 861 22 0 0 0 chr4 36302421 36302443 -119327677 + AT_rich Low_complexity Low_complexity 1 22 0 4 861 202 0 29 57 chr4 36302482 36302517 -119327603 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 861 2694 85 0 121 chr4 36302752 36303206 -119326914 + L1_Mus2 LINE L1 6168 6566 0 4 861 3210 224 69 13 chr4 36303509 36304625 -119325495 + RMER1A Other Other 26 838 -192 4 861 275 278 0 14 chr4 36305222 36305295 -119324825 + GA-rich Low_complexity Low_complexity 1 72 0 4 861 501 62 0 0 chr4 36305559 36305624 -119324496 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 861 434 360 20 37 chr4 36305897 36306191 -119323929 + B4A SINE B4 2 290 -2 4 862 557 305 14 43 chr4 36307670 36307879 -119322241 + Lx7 LINE L1 6588 6790 -906 4 862 1412 191 26 4 chr4 36307885 36308158 -119321962 - ORR1B1-int LTR MaLR -1230 279 1 4 862 2186 169 18 3 chr4 36308158 36308544 -119321576 - ORR1B1 LTR MaLR 0 394 3 4 862 1592 280 50 28 chr4 36308570 36309074 -119321046 + Lx7 LINE L1 6828 7342 -354 4 862 444 37 0 0 chr4 36309076 36309130 -119320990 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 862 21 82 0 0 chr4 36309212 36309261 -119320859 + AT_rich Low_complexity Low_complexity 1 49 0 4 862 543 43 0 0 chr4 36309977 36310047 -119320073 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 862 1333 23 17 6 chr4 36311325 36311501 -119318619 + L1Md_F3 LINE L1 6406 6583 -1 4 862 582 15 0 0 chr4 36311555 36311622 -119318498 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 862 195 42 0 0 chr4 36311622 36311645 -119318475 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 862 347 229 24 0 chr4 36312666 36312749 -119317371 - BC1_Mm scRNA scRNA -66 86 2 4 862 351 65 0 0 chr4 36313126 36313172 -119316948 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 862 4284 189 42 31 chr4 36313345 36314292 -119315828 + RMER17B LTR ERVK 1 958 0 4 862 364 261 229 6 chr4 36314359 36314525 -119315595 + Lx8 LINE L1 7116 7318 -155 4 862 527 322 20 27 chr4 36314778 36314925 -119315195 + RSINE1 SINE B4 2 147 -18 4 862 387 0 0 0 chr4 36314928 36314971 -119315149 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 862 489 358 60 34 chr4 36316577 36316846 -119313274 - LTR16A1 LTR ERVL -2 454 179 4 862 22 0 0 0 chr4 36317574 36317596 -119312524 + AT_rich Low_complexity Low_complexity 1 22 0 4 862 27 0 0 0 chr4 36317726 36317753 -119312367 + AT_rich Low_complexity Low_complexity 1 27 0 4 862 1678 232 19 19 chr4 36318186 36318564 -119311556 + ORR1C1 LTR MaLR 1 378 0 4 862 498 328 134 53 chr4 36318695 36319078 -119311042 + Lx8 LINE L1 6915 7328 -145 4 862 4565 84 23 17 chr4 36319078 36319729 -119310391 + L1Md_F2 LINE L1 5924 6578 -4 4 862 498 328 134 53 chr4 36319729 36319854 -119310266 + Lx8 LINE L1 7329 7464 -9 4 862 532 298 70 22 chr4 36319912 36320097 -119310023 - B3A SINE B2 -2 196 3 4 862 1248 220 133 26 chr4 36321092 36321400 -119308720 + ORR1B1 LTR MaLR 3 343 -51 4 862 3147 152 4 2 chr4 36321401 36321934 -119308186 + L1_Mur2 LINE L1 4862 5395 -482 4 862 506 233 84 15 chr4 36322723 36322854 -119307266 - B1_Mus1 SINE Alu -1 147 8 4 862 306 277 77 58 chr4 36322854 36322930 -119307190 - ID_B1 SINE B4 -1 223 13 4 862 1790 130 25 61 chr4 36322952 36323279 -119306841 + ORR1A2 LTR MaLR 13 327 0 4 862 608 336 56 66 chr4 36323880 36324668 -119305452 + L1_Mur3 LINE L1 39 772 -6956 4 862 229 89 44 0 chr4 36324742 36324787 -119305333 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 862 6927 56 1 0 chr4 36324787 36325644 -119304476 - L1Md_F2 LINE L1 -21 6561 5704 4 862 4315 69 21 0 chr4 36325639 36326217 -119303903 + L1_Mm LINE L1 3716 4305 -1578 4 862 3913 222 108 53 chr4 36326215 36326919 -119303201 + L1_Mur3 LINE L1 754 1494 -4386 4 862 1084 157 5 5 chr4 36326919 36327117 -119303003 + L1_Mus4 LINE L1 6433 6630 -6 4 862 3913 216 153 105 chr4 36327117 36327755 -119302365 + L1_Mur3 LINE L1 1495 2009 -3871 4 862 222 0 25 50 chr4 36327755 36327795 -119302325 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 4 862 3913 216 153 105 chr4 36327795 36328151 -119301969 + L1_Mur3 LINE L1 2010 2457 -3423 4 862 222 37 0 0 chr4 36328151 36328178 -119301942 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 862 3913 216 153 105 chr4 36328178 36328903 -119301217 + L1_Mur3 LINE L1 2458 3309 -2571 4 862 432 242 53 67 chr4 36328987 36329195 -119300925 - L1MA8 LINE L1 -55 6236 6032 4 862 182 167 224 15 chr4 36329537 36329604 -119300516 + L4 LINE RTE 332 412 -1617 4 862 7565 63 15 7 chr4 36329897 36331356 -119298764 - L1Md_F2 LINE L1 0 6582 5111 4 862 26 0 0 0 chr4 36331621 36331647 -119298473 + AT_rich Low_complexity Low_complexity 1 26 0 4 862 657 190 0 0 chr4 36331801 36331975 -119298145 + (TG)n Simple_repeat Simple_repeat 1 174 0 4 862 44 20 0 0 chr4 36332064 36332115 -119298005 + AT_rich Low_complexity Low_complexity 1 51 0 4 862 293 0 27 0 chr4 36332188 36332225 -119297895 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 862 267 103 0 0 chr4 36332298 36332337 -119297783 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 862 626 276 34 28 chr4 36332375 36332554 -119297566 - B3A SINE B2 -15 183 4 4 862 389 246 89 73 chr4 36332606 36332865 -119297255 - Lx9 LINE L1 -54 7590 7328 4 862 805 299 92 49 chr4 36332953 36333343 -119296777 - Lx9 LINE L1 -500 7144 6738 4 862 645 263 52 16 chr4 36333557 36333750 -119296370 - Lx9 LINE L1 -369 7275 7076 4 862 218 282 141 0 chr4 36334138 36334209 -119295911 + PB1D10 SINE Alu 37 117 0 4 862 31 68 0 0 chr4 36334415 36334474 -119295646 + AT_rich Low_complexity Low_complexity 1 59 0 4 862 35 71 0 0 chr4 36335629 36335699 -119294421 + AT_rich Low_complexity Low_complexity 1 70 0 4 862 21 71 0 0 chr4 36338550 36338592 -119291528 + AT_rich Low_complexity Low_complexity 1 42 0 5 862 378 0 0 0 chr4 36339136 36339178 -119290942 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 862 23 0 0 0 chr4 36340044 36340067 -119290053 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 540 258 0 105 chr4 36340148 36340291 -119289829 + B1_Mur4 SINE Alu 11 138 -12 5 862 216 97 0 0 chr4 36340296 36340327 -119289793 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 862 368 40 0 20 chr4 36340332 36340383 -119289737 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 862 29 78 0 0 chr4 36340383 36340447 -119289673 + AT_rich Low_complexity Low_complexity 1 64 0 5 862 275 312 0 10 chr4 36340913 36341010 -119289110 - L1MC LINE L1 -2014 5771 5676 5 862 207 156 0 0 chr4 36342198 36342230 -119287890 + CT-rich Low_complexity Low_complexity 1 32 0 5 862 396 0 0 0 chr4 36345435 36345479 -119284641 + (TTA)n Simple_repeat Simple_repeat 3 46 0 5 862 401 103 15 0 chr4 36346015 36346083 -119284037 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 862 1917 135 0 19 chr4 36346509 36346834 -119283286 + Lx LINE L1 6320 6638 -16 5 862 251 280 118 13 chr4 36346884 36346960 -119283160 + MTD LTR MaLR 280 363 -56 5 862 279 0 0 0 chr4 36347526 36347557 -119282563 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 862 213 151 70 0 chr4 36347571 36347657 -119282463 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 862 423 0 0 0 chr4 36348707 36348754 -119281366 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 862 235 270 0 108 chr4 36348851 36348934 -119281186 + MLT1A LTR MaLR 5 78 -296 5 862 454 271 26 26 chr4 36349209 36349364 -119280756 - Tigger7 DNA MER2_type -65 2426 2272 5 862 378 279 84 70 chr4 36349486 36349728 -119280392 - RMER20B LTR ERVK -50 466 235 5 862 1059 96 7 7 chr4 36349728 36349875 -119280245 + B1_Mus2 SINE Alu 1 147 0 5 862 1061 0 0 16 chr4 36349915 36349956 -119280164 + (GAA)n Simple_repeat Simple_repeat 2 42 0 5 862 1158 117 0 0 chr4 36349956 36350135 -119279985 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 862 1061 0 0 16 chr4 36350135 36350219 -119279901 + (GAA)n Simple_repeat Simple_repeat 1 83 0 5 862 288 0 0 0 chr4 36350220 36350252 -119279868 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 862 867 215 29 20 chr4 36350549 36350753 -119279367 - Lx9 LINE L1 -568 7076 6871 5 862 928 246 27 4 chr4 36350760 36350985 -119279135 + Lx9 LINE L1 7094 7323 -321 5 862 720 0 0 0 chr4 36351099 36351179 -119278941 + (TTCTC)n Simple_repeat Simple_repeat 4 83 0 5 862 238 216 0 0 chr4 36351184 36351235 -119278885 + T-rich Low_complexity Low_complexity 1 51 0 5 862 21 0 0 0 chr4 36352002 36352023 -119278097 + AT_rich Low_complexity Low_complexity 1 21 0 5 862 574 190 26 0 chr4 36352570 36352686 -119277434 - URR1B DNA MER1_type -2 223 105 5 862 234 305 141 32 chr4 36352686 36352726 -119277394 + CYRA11_Mm Unknown Y-chromosome 173 345 -272 5 862 3013 222 149 20 chr4 36352777 36353916 -119276204 + L1_Mur3 LINE L1 1436 2721 -3159 5 862 1390 272 36 31 chr4 36353910 36354359 -119275761 + Lx6 LINE L1 5844 6344 -714 5 862 369 0 0 0 chr4 36354359 36354400 -119275720 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 5 862 2282 216 32 10 chr4 36354402 36354897 -119275223 - Lx4B LINE L1 -49 7009 6504 5 862 1586 165 8 0 chr4 36354893 36355154 -119274966 + Lx4B LINE L1 6255 6517 -541 5 862 230 276 17 0 chr4 36355137 36355195 -119274925 + Lx6 LINE L1 6515 6573 -887 5 862 652 302 67 75 chr4 36355205 36355638 -119274482 + Lx5 LINE L1 6484 7299 -161 5 862 2368 189 32 10 chr4 36356005 36356497 -119273623 - RLTR22_Mur LTR ERVK -5 1843 1341 5 862 555 29 0 0 chr4 36356497 36356566 -119273554 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 862 583 89 0 0 chr4 36356573 36356652 -119273468 + L1_Mm LINE L1 4847 4925 -958 5 862 1045 61 0 0 chr4 36356653 36356784 -119273336 - L1_Mus1 LINE L1 -639 5928 5798 5 862 8612 93 7 9 chr4 36356797 36358015 -119272105 + L1_Mm LINE L1 4605 5820 -63 5 862 1493 199 115 29 chr4 36358111 36358519 -119271601 - RLTR22_Mur LTR ERVK -1109 739 297 5 862 1602 161 10 3 chr4 36358519 36358811 -119271309 + L1_Mur2 LINE L1 5133 5426 -451 5 862 2993 128 8 20 chr4 36358811 36359312 -119270808 + Lx LINE L1 6160 6654 0 5 862 1636 164 73 13 chr4 36359337 36359494 -119270626 - RLTR22_Mur LTR ERVK -1512 336 177 5 862 387 0 0 0 chr4 36359494 36359537 -119270583 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 862 1636 164 73 13 chr4 36359537 36359693 -119270427 - RLTR22_Mur LTR ERVK -1672 176 5 5 862 23 33 0 0 chr4 36360174 36360204 -119269916 + AT_rich Low_complexity Low_complexity 1 30 0 5 862 6968 43 1 0 chr4 36360479 36361321 -119268799 - L1Md_T LINE L1 -2 6580 5738 5 862 725 299 12 40 chr4 36362171 36362418 -119267702 - MER2 DNA MER2_type -16 329 90 5 862 234 0 0 0 chr4 36362834 36362860 -119267260 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 862 31 26 0 0 chr4 36363113 36363151 -119266969 + AT_rich Low_complexity Low_complexity 1 38 0 5 862 207 0 0 0 chr4 36363283 36363306 -119266814 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 862 21 36 0 0 chr4 36363799 36363827 -119266293 + AT_rich Low_complexity Low_complexity 1 28 0 5 862 667 233 12 19 chr4 36364802 36364964 -119265156 + Lx7 LINE L1 7236 7396 -300 5 862 351 0 0 0 chr4 36364991 36365030 -119265090 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 862 24 32 0 0 chr4 36365133 36365164 -119264956 + AT_rich Low_complexity Low_complexity 1 31 0 5 862 454 48 0 0 chr4 36365366 36365429 -119264691 + L1_Mus2 LINE L1 6504 6566 0 5 862 3111 283 90 24 chr4 36365446 36365632 -119264488 + Lx9 LINE L1 6110 6320 -1324 5 862 303 28 0 0 chr4 36365632 36365668 -119264452 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 862 3111 283 90 24 chr4 36365668 36366754 -119263366 + Lx9 LINE L1 6321 7466 -178 5 862 26 64 0 0 chr4 36366856 36366903 -119263217 + AT_rich Low_complexity Low_complexity 1 47 0 5 862 802 154 0 18 chr4 36367261 36367426 -119262694 + CT-rich Low_complexity Low_complexity 2 163 0 5 862 2856 59 51 0 chr4 36367734 36368105 -119262015 + RLTR10 LTR ERVK 1 390 0 5 862 3185 53 0 5 chr4 36369233 36369631 -119260489 + MTA_Mm LTR MaLR 1 396 0 5 862 189 293 25 74 chr4 36369793 36369874 -119260246 + MIR SINE MIR 9 85 -177 5 862 23 78 0 0 chr4 36370104 36370155 -119259965 + AT_rich Low_complexity Low_complexity 1 51 0 5 862 271 311 80 27 chr4 36370509 36370734 -119259386 + L1MC4a LINE L1 7284 7520 -362 5 862 339 242 30 0 chr4 36370755 36370854 -119259266 + Lx2B LINE L1 6898 6999 -1 5 862 248 190 69 0 chr4 36370993 36371051 -119259069 + MLT1H LTR MaLR 6 67 -502 5 862 369 388 13 44 chr4 36371706 36371935 -119258185 + MLT1H LTR MaLR 32 253 -296 5 862 303 299 0 0 chr4 36373919 36373996 -119256124 + ID4_ SINE ID 2 78 -5 5 862 256 333 18 45 chr4 36374418 36374528 -119255592 + MIRc SINE MIR 90 196 -72 5 862 519 17 0 0 chr4 36374806 36374866 -119255254 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 862 222 388 24 29 chr4 36376587 36376794 -119253326 - L4 LINE RTE -547 1482 1277 5 862 2795 111 5 24 chr4 36378195 36378619 -119251501 + L1_Mus3 LINE L1 6214 6629 -9 5 862 1051 311 61 45 chr4 36378703 36379065 -119251055 + Lx9 LINE L1 6593 6969 -675 5 862 8478 29 0 0 chr4 36379065 36380061 -119250059 + L1Md_A LINE L1 5587 6582 0 5 862 1051 311 61 45 chr4 36380061 36380209 -119249911 + Lx9 LINE L1 6970 7111 -533 5 862 247 100 4 0 chr4 36380722 36380779 -119249341 - L1_Mus1 LINE L1 0 6567 6515 5 862 22 0 0 0 chr4 36380989 36381011 -119249109 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 214 286 0 28 chr4 36381020 36381092 -119249028 + CT-rich Low_complexity Low_complexity 2 71 0 5 862 468 0 0 0 chr4 36381304 36381356 -119248764 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 862 204 40 0 0 chr4 36381449 36381474 -119248646 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5 862 411 321 0 9 chr4 36381494 36381601 -119248519 - PB1D10 SINE Alu 0 117 12 5 862 682 293 178 25 chr4 36382016 36382095 -119248025 - Lx8 LINE L1 -20 7453 7339 5 862 187 29 86 0 chr4 36382095 36382130 -119247990 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 5 862 180 0 0 0 chr4 36382131 36382151 -119247969 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 862 486 0 0 0 chr4 36382151 36382204 -119247916 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 862 682 293 178 25 chr4 36382204 36382481 -119247639 - Lx8 LINE L1 -135 7338 7042 5 862 6354 75 5 26 chr4 36382517 36383396 -119246724 - L1Md_F2 LINE L1 -19 6563 5704 5 862 5018 60 9 0 chr4 36383391 36384053 -119246067 + L1_Mm LINE L1 3716 4383 -1500 5 862 282 376 107 10 chr4 36384053 36384249 -119245871 - Lx7 LINE L1 -686 7010 6796 5 862 200 200 25 0 chr4 36384777 36384817 -119245303 - L3 LINE CR1 -3562 927 887 5 862 655 303 27 70 chr4 36385414 36385673 -119244447 + B4A SINE B4 17 264 -28 5 862 21 0 0 0 chr4 36385999 36386020 -119244100 + AT_rich Low_complexity Low_complexity 1 21 0 5 862 977 97 137 18 chr4 36386543 36386711 -119243409 - B2_Mm2 SINE B2 -7 188 1 5 862 1152 57 0 0 chr4 36387190 36387330 -119242790 + B1_Mm SINE Alu 1 140 -7 5 862 231 61 0 0 chr4 36387333 36387366 -119242754 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 862 201 164 0 76 chr4 36387425 36387491 -119242629 + T-rich Low_complexity Low_complexity 3 63 0 5 862 279 0 0 0 chr4 36387800 36387831 -119242289 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 862 656 269 7 0 chr4 36388607 36388752 -119241368 + RSINE1 SINE B4 1 146 -19 5 862 195 42 0 0 chr4 36388758 36388782 -119241338 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 862 22 0 0 0 chr4 36389174 36389196 -119240924 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 23 0 0 0 chr4 36389466 36389489 -119240631 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 214 330 137 59 chr4 36390192 36390411 -119239709 - MIR SINE MIR -10 252 17 5 862 263 85 21 0 chr4 36390496 36390543 -119239577 + (CAA)n Simple_repeat Simple_repeat 1 48 0 5 862 661 234 175 0 chr4 36391165 36391336 -119238784 - MTB_Mm LTR MaLR -206 201 1 5 862 306 0 0 0 chr4 36391963 36391997 -119238123 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 6 862 302 366 87 26 chr4 36392576 36392806 -119237314 + MIR SINE MIR 8 251 -11 6 862 21 0 0 0 chr4 36393209 36393230 -119236890 + AT_rich Low_complexity Low_complexity 1 21 0 6 862 1121 75 0 7 chr4 36393251 36393398 -119236722 + B1_Mm SINE Alu 2 147 0 6 862 729 318 45 26 chr4 36393780 36394132 -119235988 + ORR1E LTR MaLR 1 359 0 6 862 316 255 151 50 chr4 36394655 36394847 -119235273 - L1MA7 LINE L1 -272 6019 5814 6 862 3463 171 18 3 chr4 36395003 36395608 -119234512 + Lx LINE L1 6035 6648 -6 6 862 21 36 0 0 chr4 36396130 36396158 -119233962 + AT_rich Low_complexity Low_complexity 1 28 0 6 862 396 0 0 0 chr4 36397198 36397242 -119232878 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 862 248 311 0 0 chr4 36398921 36398982 -119231138 + ID4_ SINE ID 7 67 -16 6 862 445 68 13 13 chr4 36398989 36399064 -119231056 + (CATA)n Simple_repeat Simple_repeat 2 76 0 6 862 1225 290 71 14 chr4 36399114 36399467 -119230653 + MTE2b LTR MaLR 3 375 -4 6 862 273 333 137 18 chr4 36399662 36399830 -119230290 + MLT1E1A LTR MaLR 493 680 0 6 862 1780 260 150 21 chr4 36400246 36400988 -119229132 + Lx2B LINE L1 6144 6983 -17 6 862 537 16 0 0 chr4 36401306 36401368 -119228752 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6 862 752 268 55 40 chr4 36401370 36401572 -119228548 - B3 SINE B2 -6 210 6 6 862 455 282 27 91 chr4 36401575 36401762 -119228358 + MTEa LTR MaLR 205 379 0 6 862 924 321 21 38 chr4 36402675 36402999 -119227121 + Lx9 LINE L1 7101 7419 -225 6 862 1307 147 57 23 chr4 36402999 36403263 -119226857 + Lx LINE L1 6377 6649 -5 6 862 924 321 21 38 chr4 36403263 36403310 -119226810 + Lx9 LINE L1 7420 7466 -178 6 862 405 324 103 4 chr4 36403768 36404031 -119226089 - L1MCa LINE L1 -3313 3008 2720 6 862 322 253 174 46 chr4 36404055 36404250 -119225870 - L1MCa LINE L1 -4355 2153 1934 6 862 370 282 77 33 chr4 36404856 36405039 -119225081 - L1MCa LINE L1 -5171 1337 1147 6 862 266 274 61 53 chr4 36405181 36405312 -119224808 + Lx5 LINE L1 6909 7040 -10 6 862 240 35 0 0 chr4 36405313 36405342 -119224778 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 6 862 689 321 141 75 chr4 36405370 36406292 -119223828 - L1MCa LINE L1 -5515 993 11 6 862 290 123 0 30 chr4 36406521 36406588 -119223532 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 6 862 676 325 17 13 chr4 36408747 36408978 -119221142 + MER2 DNA MER2_type 113 344 -1 6 862 237 65 0 0 chr4 36409269 36409300 -119220820 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 862 207 100 0 0 chr4 36409304 36409334 -119220786 + (CATA)n Simple_repeat Simple_repeat 2 31 0 6 862 229 340 140 67 chr4 36409526 36409690 -119220430 + L2b LINE L2 3103 3278 -97 6 862 297 350 27 30 chr4 36410643 36410905 -119219215 + Lx8 LINE L1 7179 7439 -34 6 862 183 380 0 14 chr4 36411568 36411640 -119218480 + MIR SINE MIR 10 80 -182 6 862 30 0 0 0 chr4 36411933 36411963 -119218157 + AT_rich Low_complexity Low_complexity 1 30 0 6 862 243 0 0 0 chr4 36414098 36414125 -119215995 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 862 203 179 0 0 chr4 36414318 36414357 -119215763 + A-rich Low_complexity Low_complexity 2 40 0 6 862 525 32 0 0 chr4 36414617 36414680 -119215440 + (GAGAA)n Simple_repeat Simple_repeat 3 65 0 6 862 282 291 128 0 chr4 36415865 36415951 -119214169 - B4A SINE B4 -195 97 1 6 862 2004 196 53 2 chr4 36416261 36416660 -119213460 + MTC LTR MaLR 3 421 0 6 862 311 359 7 30 chr4 36418404 36418539 -119211581 + RSINE1 SINE B4 3 134 -31 6 862 627 39 0 0 chr4 36418551 36418629 -119211491 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 862 667 308 0 0 chr4 36418975 36419131 -119210989 - B3A SINE B2 -34 164 9 6 862 9599 19 1 0 chr4 36419165 36420282 -119209838 - L1Md_T LINE L1 -384 5499 4382 6 862 747 65 0 0 chr4 36420279 36420371 -119209749 + L1Md_T LINE L1 5495 5586 -297 6 862 8495 31 0 0 chr4 36420371 36421367 -119208753 + L1Md_T LINE L1 5587 6582 0 6 862 407 162 0 26 chr4 36422108 36422184 -119207936 - L1_Mur1 LINE L1 -636 5250 5177 6 862 2361 70 13 0 chr4 36422191 36422505 -119207615 + Lx3_Mus LINE L1 6692 7009 0 6 862 225 224 20 0 chr4 36422900 36422949 -119207171 + MER5B DNA MER1_type 60 109 -69 6 862 319 339 39 0 chr4 36423013 36423143 -119206977 - MER5A1 DNA MER1_type -7 159 25 6 862 1514 271 49 68 chr4 36423832 36424387 -119205733 - RMER19C LTR ERVK 0 611 68 6 862 192 263 151 84 chr4 36424490 36424656 -119205464 - MIRb SINE MIR -8 260 84 6 862 458 75 0 0 chr4 36425515 36425582 -119204538 + L1Md_F2 LINE L1 6508 6574 -8 6 862 409 126 21 21 chr4 36425592 36425689 -119204431 + (TCTCTG)n Simple_repeat Simple_repeat 6 102 0 6 862 180 0 0 0 chr4 36425686 36425706 -119204414 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 862 573 266 19 0 chr4 36425706 36425864 -119204256 - Lx9 LINE L1 -167 7477 7317 6 862 261 305 0 12 chr4 36425866 36425949 -119204171 - Lx9 LINE L1 -1245 6399 6318 6 862 452 297 74 35 chr4 36426078 36426336 -119203784 - Lx9 LINE L1 -1591 6053 5786 6 862 434 325 20 13 chr4 36426977 36427130 -119202990 + RSINE1 SINE B4 4 157 -8 6 862 1653 204 48 21 chr4 36427798 36428171 -119201949 - Lx4B LINE L1 -81 6977 6498 6 862 1662 176 35 3 chr4 36428165 36428501 -119201619 - Lx4B LINE L1 -7 5879 5477 6 862 1724 186 71 40 chr4 36428496 36428596 -119201524 + L1_Mur2 LINE L1 5026 5133 -744 6 862 3196 85 4 22 chr4 36428596 36429052 -119201068 - L1_Mus2 LINE L1 0 6566 6119 6 862 1724 186 71 40 chr4 36429052 36429372 -119200748 + L1_Mur2 LINE L1 5134 5458 -419 6 862 333 265 29 0 chr4 36429725 36429827 -119200293 + Tigger8 DNA MER2_type 207 311 -355 6 862 5082 77 16 3 chr4 36430419 36431094 -119199026 + L1Md_F2 LINE L1 5889 6572 -10 6 862 524 37 24 12 chr4 36431095 36431177 -119198943 + L1Md_F3 LINE L1 6490 6572 -12 6 862 198 103 0 0 chr4 36432443 36432472 -119197648 + (TATG)n Simple_repeat Simple_repeat 3 31 0 6 862 344 321 186 19 chr4 36432665 36432976 -119197144 + HAL1 LINE L1 1530 1892 -615 6 862 650 283 117 68 chr4 36433024 36433871 -119196249 + L1MD1 LINE L1 5076 5975 -267 6 862 24 32 0 0 chr4 36434718 36434749 -119195371 + AT_rich Low_complexity Low_complexity 1 31 0 6 862 236 306 8 112 chr4 36434867 36434931 -119195189 + B4A SINE B4 35 85 -207 6 862 490 313 14 7 chr4 36434931 36435079 -119195041 + B1F SINE Alu 1 149 0 6 862 249 337 111 10 chr4 36437088 36437187 -119192933 - PB1D10 SINE Alu -7 110 2 6 862 22 0 0 0 chr4 36437642 36437664 -119192456 + AT_rich Low_complexity Low_complexity 1 22 0 6 863 1455 278 84 44 chr4 36439376 36440123 -119189997 + RMER12 LTR ERVK 1 796 -1052 6 863 234 250 210 21 chr4 36440091 36440234 -119189886 + RMER12 LTR ERVK 1119 1288 -116 6 863 682 184 0 32 chr4 36440241 36440426 -119189694 + CT-rich Low_complexity Low_complexity 2 180 0 6 863 914 267 55 52 chr4 36440444 36440772 -119189348 + RMER12 LTR ERVK 994 1322 0 6 863 21 57 0 0 chr4 36441742 36441777 -119188343 + AT_rich Low_complexity Low_complexity 1 35 0 6 863 342 0 0 0 chr4 36441786 36441824 -119188296 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 863 365 298 70 31 chr4 36441825 36441953 -119188167 - RSINE1 SINE B4 -22 143 11 6 863 342 350 34 0 chr4 36442987 36443104 -119187016 + ID_B1 SINE B4 84 204 -20 6 863 24 77 0 0 chr4 36443106 36443158 -119186962 + AT_rich Low_complexity Low_complexity 1 52 0 6 863 874 215 173 86 chr4 36443336 36443660 -119186460 + Lx8 LINE L1 5506 5890 -1583 6 863 3422 244 53 22 chr4 36443965 36444598 -119185522 + Lx9 LINE L1 6487 7148 -496 6 863 3878 34 6 4 chr4 36444598 36445072 -119185048 + L1Md_F3 LINE L1 6096 6570 -14 6 863 3422 244 53 22 chr4 36445072 36445381 -119184739 + Lx9 LINE L1 7149 7458 -186 6 863 261 0 0 0 chr4 36445386 36445415 -119184705 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 863 23 33 0 0 chr4 36445523 36445553 -119184567 + AT_rich Low_complexity Low_complexity 1 30 0 6 863 834 325 41 8 chr4 36445618 36446105 -119184015 - L1MA8 LINE L1 -423 5868 5366 6 863 595 308 62 98 chr4 36446174 36446693 -119183427 + RLTR11A2 LTR ERVK 1 500 -27 6 863 244 420 35 0 chr4 36446853 36446996 -119183124 - MIRb SINE MIR -113 155 8 6 863 549 202 16 34 chr4 36447114 36447267 -119182853 + B3 SINE B2 40 185 -10 6 863 1965 146 65 8 chr4 36447268 36447621 -119182499 + Lx2 LINE L1 6624 6996 -1 6 863 203 356 58 0 chr4 36448320 36448407 -119181713 + MIR SINE MIR 63 154 -108 6 863 1157 75 0 0 chr4 36448857 36449004 -119181116 + B1_Mm SINE Alu 1 147 0 6 863 1300 244 88 15 chr4 36449155 36449321 -119180799 + ORR1D1 LTR MaLR 1 193 -181 6 863 342 0 0 0 chr4 36449321 36449359 -119180761 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 863 1300 244 88 15 chr4 36449359 36449533 -119180587 + ORR1D1 LTR MaLR 194 366 -8 6 863 2182 209 82 36 chr4 36449538 36450123 -119179997 + ORR1D1-int LTR MaLR 2 613 -757 6 863 450 264 139 0 chr4 36450461 36450605 -119179515 - B3A SINE B2 -34 164 1 6 863 25 75 0 0 chr4 36450795 36450848 -119179272 + AT_rich Low_complexity Low_complexity 1 53 0 6 863 7874 58 2 1 chr4 36451366 36452351 -119177769 - L1Md_F2 LINE L1 0 6582 5597 6 863 249 207 0 17 chr4 36452425 36452484 -119177636 + T-rich Low_complexity Low_complexity 2 59 0 6 863 220 286 91 45 chr4 36452939 36453071 -119177049 + MIRc SINE MIR 80 217 -51 6 863 252 252 54 34 chr4 36453614 36453762 -119176358 + Lx9 LINE L1 7494 7644 0 6 863 23 33 0 0 chr4 36454130 36454160 -119175960 + AT_rich Low_complexity Low_complexity 1 30 0 6 863 23 0 0 0 chr4 36454231 36454254 -119175866 + AT_rich Low_complexity Low_complexity 1 23 0 6 863 23 0 0 0 chr4 36456299 36456322 -119173798 + AT_rich Low_complexity Low_complexity 1 23 0 6 863 606 39 0 0 chr4 36456646 36456723 -119173397 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 863 21 36 0 0 chr4 36457470 36457498 -119172622 + AT_rich Low_complexity Low_complexity 1 28 0 6 863 1914 342 29 28 chr4 36457737 36458638 -119171482 - Lx7 LINE L1 -416 7280 6379 6 863 249 57 0 0 chr4 36458960 36458995 -119171125 + (T)n Simple_repeat Simple_repeat 1 35 0 6 863 2037 101 0 16 chr4 36459015 36459326 -119170794 - L1Md_F2 LINE L1 -16 6566 6261 6 863 4574 52 0 0 chr4 36459326 36459884 -119170236 + L1Md_F2 LINE L1 5695 6252 -330 6 863 1455 308 79 36 chr4 36460264 36460957 -119169163 - Lx8 LINE L1 -134 7339 6617 7 863 1174 119 48 5 chr4 36462113 36462299 -119167821 + B2_Mm2 SINE B2 2 195 0 7 863 724 314 146 34 chr4 36463411 36463876 -119166244 + MER67C LTR ERV1 2 518 -193 7 863 3715 36 2 0 chr4 36464275 36464722 -119165398 - L1Md_F2 LINE L1 -534 6048 5601 7 863 3846 91 0 8 chr4 36464722 36465244 -119164876 + L1Md_F2 LINE L1 6051 6568 -14 7 863 483 176 0 0 chr4 36465332 36465423 -119164697 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 7 863 305 264 25 130 chr4 36465601 36465762 -119164358 + ORR1D1 LTR MaLR 231 374 0 7 863 1201 370 102 77 chr4 36465811 36466154 -119163966 + ORR1D1-int LTR MaLR 9 354 -1226 7 863 708 264 80 20 chr4 36466154 36466355 -119163765 + B3 SINE B2 4 216 0 7 863 1201 370 102 77 chr4 36466355 36467272 -119162848 + ORR1D1-int LTR MaLR 355 1301 -279 7 863 608 337 0 16 chr4 36467928 36468112 -119162008 - Lx8 LINE L1 -185 7288 7108 7 863 495 0 0 0 chr4 36468116 36468171 -119161949 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 863 250 200 0 43 chr4 36468171 36468218 -119161902 + RLTR20C LTR ERVK 446 490 -44 7 863 1707 152 21 0 chr4 36468219 36468501 -119161619 + Lx2B LINE L1 6694 6981 -19 7 863 386 238 12 0 chr4 36468550 36468634 -119161486 - ORR1D1 LTR MaLR -289 85 1 7 863 297 0 0 0 chr4 36468709 36468742 -119161378 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 863 21 57 0 0 chr4 36468816 36468851 -119161269 + AT_rich Low_complexity Low_complexity 1 35 0 7 863 23 33 0 0 chr4 36469430 36469460 -119160660 + AT_rich Low_complexity Low_complexity 1 30 0 7 863 235 298 60 39 chr4 36469494 36469636 -119160484 + MIR SINE MIR 38 184 -84 7 863 213 268 17 51 chr4 36470118 36470177 -119159943 + L2c LINE L2 3328 3384 -3 7 863 543 144 0 0 chr4 36471658 36471755 -119158365 + (TC)n Simple_repeat Simple_repeat 1 97 0 7 863 213 39 0 0 chr4 36472008 36472034 -119158086 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 863 1911 219 84 18 chr4 36472045 36472534 -119157586 + Lx9 LINE L1 6994 7514 -130 7 863 277 136 0 29 chr4 36474429 36474497 -119155623 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 863 389 383 0 41 chr4 36474552 36474699 -119155421 - B4A SINE B4 -10 282 142 7 863 692 279 143 42 chr4 36476316 36476581 -119153539 + ORR1E LTR MaLR 1 292 -67 7 863 3551 345 50 16 chr4 36476614 36478089 -119152031 + ORR1E-int LTR MaLR 5 1530 -50 7 863 607 319 83 21 chr4 36478089 36478357 -119151763 + ORR1E LTR MaLR 4 280 -90 7 863 248 172 0 0 chr4 36478794 36478858 -119151262 + Lx2 LINE L1 6934 6997 0 7 863 1154 55 0 7 chr4 36479352 36479500 -119150620 + B1_Mm SINE Alu 1 147 0 7 863 209 57 29 0 chr4 36479500 36479535 -119150585 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 863 23 0 0 0 chr4 36479853 36479876 -119150244 + AT_rich Low_complexity Low_complexity 1 23 0 7 863 251 337 0 21 chr4 36480230 36480324 -119149796 + (CATA)n Simple_repeat Simple_repeat 1 92 0 7 863 279 0 0 0 chr4 36480415 36480446 -119149674 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 863 344 355 16 0 chr4 36480571 36480692 -119149428 - MLT1A0 LTR MaLR -231 134 12 7 863 306 0 0 0 chr4 36482156 36482190 -119147930 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 863 387 141 0 0 chr4 36482650 36482661 -119147459 + (GAAA)n Simple_repeat Simple_repeat 2 12 0 7 863 867 129 0 0 chr4 36482661 36482816 -119147304 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 7 863 387 141 0 0 chr4 36482816 36482889 -119147231 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 7 863 9262 152 30 19 chr4 36483018 36485279 -119144841 + L1_Mus3 LINE L1 4482 6764 -696 7 863 198 0 0 0 chr4 36485279 36485301 -119144819 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 863 1795 308 122 71 chr4 36485301 36485918 -119144202 + L1_Mus3 LINE L1 6765 7460 0 7 863 198 0 0 0 chr4 36486165 36486187 -119143933 + (CAA)n Simple_repeat Simple_repeat 2 23 0 7 863 531 0 0 0 chr4 36486187 36486246 -119143874 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 863 193 82 0 90 chr4 36486431 36486498 -119143622 + A-rich Low_complexity Low_complexity 1 61 0 7 863 378 0 0 0 chr4 36486637 36486679 -119143441 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 863 370 325 35 83 chr4 36486809 36487148 -119142972 - Lx8 LINE L1 -356 7117 6795 7 863 180 0 0 0 chr4 36487191 36487211 -119142909 + (T)n Simple_repeat Simple_repeat 1 20 0 7 863 402 266 2 23 chr4 36487589 36487702 -119142418 + MTE2b LTR MaLR 1 107 -272 7 863 722 290 78 24 chr4 36487704 36487997 -119142123 + MTE2b LTR MaLR 58 366 -13 7 863 8659 116 18 27 chr4 36490768 36492285 -119137835 + Lx3_Mus LINE L1 5490 6993 -16 7 863 23 0 0 0 chr4 36492285 36492308 -119137812 + AT_rich Low_complexity Low_complexity 1 23 0 7 863 279 0 0 0 chr4 36492430 36492461 -119137659 + (T)n Simple_repeat Simple_repeat 1 31 0 7 863 184 340 156 49 chr4 36492605 36492995 -119137125 - L2 LINE L2 -765 2654 2223 7 863 299 347 129 20 chr4 36493063 36493413 -119136707 - L2 LINE L2 -1493 1926 1539 7 863 516 16 0 0 chr4 36493430 36493491 -119136629 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 863 200 354 78 41 chr4 36493511 36493729 -119136391 - L2 LINE L2 -1984 1435 1210 7 863 213 65 0 0 chr4 36493765 36493796 -119136324 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 863 1285 127 29 0 chr4 36493803 36494008 -119136112 - L1_Mus1 LINE L1 -1 6566 6356 7 863 542 105 0 0 chr4 36494008 36494084 -119136036 + L1_Mus1 LINE L1 6148 6223 -344 7 863 296 367 157 3 chr4 36494300 36494587 -119135533 - L2 LINE L2 -2331 1088 758 7 863 180 364 132 32 chr4 36494602 36494792 -119135328 - L2 LINE L2 -2743 676 468 7 863 250 265 108 25 chr4 36495012 36495132 -119134988 + MIRb SINE MIR 131 260 -8 7 863 534 74 4 0 chr4 36496639 36496715 -119133405 - L1_Mus4 LINE L1 -298 6286 6202 7 863 2083 113 74 3 chr4 36496715 36497052 -119133068 + L1_Mus4 LINE L1 6276 6636 0 7 863 2614 198 85 91 chr4 36497266 36498163 -119131957 - RLTR13D6 LTR ERVK -33 869 1 7 863 1155 121 3 7 chr4 36498533 36498815 -119131305 + (TCTA)n Simple_repeat Simple_repeat 1 281 0 7 863 448 241 34 43 chr4 36499254 36499371 -119130749 + B1F SINE Alu 32 147 -2 7 863 629 273 86 0 chr4 36500190 36500388 -119129732 + B3 SINE B2 2 216 0 1 863 23 0 0 0 chr4 36500543 36500566 -119129554 + AT_rich Low_complexity Low_complexity 1 23 0 2 863 22 35 0 0 chr4 36501311 36501340 -119128780 + AT_rich Low_complexity Low_complexity 1 29 0 3 863 369 0 0 0 chr4 36501398 36501439 -119128681 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 4 863 204 67 0 0 chr4 36501838 36501868 -119128252 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 863 527 0 16 0 chr4 36503108 36503171 -119126949 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 863 37 52 0 0 chr4 36505817 36505875 -119124245 + AT_rich Low_complexity Low_complexity 1 58 0 7 863 216 220 68 174 chr4 36506022 36506154 -119123966 + B1F SINE Alu 30 147 -2 8 863 339 96 0 0 chr4 36506156 36506208 -119123912 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 863 561 42 0 0 chr4 36508504 36508576 -119121544 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1 863 4545 60 0 5 chr4 36510125 36510711 -119119409 - L1Md_F2 LINE L1 0 6582 6000 1 863 243 0 0 0 chr4 36510849 36510876 -119119244 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 863 2696 64 3 0 chr4 36510905 36511251 -119118869 - L1_Mus1 LINE L1 0 6567 6221 1 863 227 94 0 0 chr4 36511251 36511283 -119118837 + L1_Mus1 LINE L1 6220 6251 -316 1 863 197 232 51 51 chr4 36511305 36511364 -119118756 + L3 LINE CR1 891 949 -3540 1 863 231 299 59 8 chr4 36511483 36511601 -119118519 + L1MA6 LINE L1 6074 6197 -103 1 863 189 74 0 0 chr4 36511848 36511875 -119118245 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 1 863 438 20 0 0 chr4 36511998 36512049 -119118071 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 863 21 36 0 0 chr4 36513275 36513303 -119116817 + AT_rich Low_complexity Low_complexity 1 28 0 1 863 216 0 0 0 chr4 36513442 36513466 -119116654 + (A)n Simple_repeat Simple_repeat 1 24 0 1 863 804 152 100 17 chr4 36513831 36514011 -119116109 + Lx LINE L1 6440 6634 -20 2 863 1240 206 112 27 chr4 36514234 36514273 -119115847 + RMER17C LTR ERVK 5 40 -370 2 863 3337 38 2 2 chr4 36514273 36514669 -119115451 + MTA_Mm LTR MaLR 1 396 0 2 863 1240 206 112 27 chr4 36514669 36515003 -119115117 + RMER17C LTR ERVK 41 410 0 2 863 219 36 0 0 chr4 36515037 36515065 -119115055 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 863 415 341 106 27 chr4 36515103 36515165 -119114955 - B4A SINE B4 -16 276 218 2 863 653 0 13 0 chr4 36515165 36515242 -119114878 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 2 863 415 341 106 27 chr4 36515242 36515435 -119114685 - B4A SINE B4 -75 217 1 2 863 236 338 103 0 chr4 36518593 36518729 -119111391 + MER3 DNA MER1_type 36 185 -24 2 863 1991 194 19 45 chr4 36519866 36520688 -119109432 + L1_Mur1 LINE L1 766 1572 -2340 2 863 6963 176 36 7 chr4 36520682 36522053 -119108067 + L1_Mur2 LINE L1 4205 5615 -262 2 863 2957 242 89 10 chr4 36522051 36522862 -119107258 + Lx2B LINE L1 6125 6999 -1 2 863 215 279 112 12 chr4 36522956 36523036 -119107084 + B1F SINE Alu 10 97 -52 3 863 801 305 147 35 chr4 36524657 36525255 -119104865 + L1_Mur3 LINE L1 2197 2861 -3019 3 863 356 314 71 33 chr4 36525257 36525468 -119104652 + Lx8 LINE L1 7246 7464 -9 3 863 357 229 26 71 chr4 36525488 36525507 -119104613 + L1_Mur1 LINE L1 2885 2897 -1015 2 863 2742 100 5 5 chr4 36525507 36525908 -119104212 - L1_Mus3 LINE L1 0 6638 6238 3 863 357 229 26 71 chr4 36525908 36526001 -119104119 + L1_Mur1 LINE L1 2898 2992 -920 2 863 616 288 22 14 chr4 36525997 36526291 -119103829 + Lx7 LINE L1 3593 3887 -2256 3 863 966 320 44 23 chr4 36526289 36527061 -119103059 + Lx7 LINE L1 5348 6168 -1528 3 863 287 229 18 37 chr4 36527063 36527172 -119102948 + (CATA)n Simple_repeat Simple_repeat 2 108 0 3 863 742 131 18 12 chr4 36527176 36527346 -119102774 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 863 254 194 0 14 chr4 36527367 36527440 -119102680 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 863 285 363 8 0 chr4 36528116 36528240 -119101880 + MER117 DNA MER1_type 4 128 -69 3 863 526 238 231 0 chr4 36528459 36528619 -119101501 - RMER15 LTR ERVL 0 575 379 3 863 1131 49 0 0 chr4 36529243 36529385 -119100735 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 3 863 1198 329 49 13 chr4 36529674 36530184 -119099936 - Lx8 LINE L1 0 7473 6963 4 863 3805 69 15 15 chr4 36530205 36530732 -119099388 - L1Md_F2 LINE L1 -3 6579 6053 4 863 213 121 0 0 chr4 36531719 36531752 -119098368 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 863 509 321 30 0 chr4 36531752 36531883 -119098237 - RSINE1 SINE B4 -29 136 2 4 863 5130 2 0 0 chr4 36532001 36532569 -119097551 - L1Md_A LINE L1 -1 6581 6014 4 863 489 71 0 0 chr4 36533346 36533416 -119096704 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 863 834 158 4 1 chr4 36533486 36533646 -119096474 - Lx LINE L1 -62 6592 6388 4 863 1554 27 0 16 chr4 36534024 36534211 -119095909 - B2_Mm1a SINE B2 -8 185 2 4 863 3068 56 15 2 chr4 36534564 36534959 -119095161 + MTB LTR MaLR 1 400 0 4 863 5689 137 2 42 chr4 36535064 36536017 -119094103 - Lx2A LINE L1 -1 7007 6093 4 863 288 230 0 39 chr4 36536852 36536929 -119093191 + (CATA)n Simple_repeat Simple_repeat 1 74 0 5 863 198 0 0 0 chr4 36537857 36537879 -119092241 + (CATA)n Simple_repeat Simple_repeat 1 22 0 5 863 2946 100 55 74 chr4 36537917 36538446 -119091674 + MURVY-LTR LTR ERV1 1 519 0 5 863 1303 282 11 8 chr4 36539468 36539836 -119090284 + ORR1D1 LTR MaLR 2 370 -4 5 863 950 253 169 21 chr4 36540004 36540335 -119089785 - ORR1C2 LTR MaLR 0 384 5 5 863 393 58 0 0 chr4 36540572 36540624 -119089496 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 863 932 299 102 15 chr4 36540669 36541002 -119089118 + ORR1D2 LTR MaLR 9 370 0 5 863 1143 273 46 3 chr4 36541002 36541261 -119088859 + ORR1D2-int LTR MaLR 1 271 -1099 5 863 2425 230 24 33 chr4 36541261 36541837 -119088283 + RLTR20B3 LTR ERVK 1 571 -6 5 863 2440 284 131 35 chr4 36541833 36542856 -119087264 + ORR1D2-int LTR MaLR 249 1369 -1 5 863 887 311 16 47 chr4 36542857 36543238 -119086882 + ORR1D2 LTR MaLR 1 369 -1 5 863 404 341 55 28 chr4 36543366 36543547 -119086573 - B4 SINE B4 -77 215 30 5 863 477 194 41 142 chr4 36543644 36543890 -119086230 - Lx7 LINE L1 0 7696 7476 5 863 260 203 15 15 chr4 36543965 36544030 -119086090 - Lx7 LINE L1 -375 7321 7257 5 863 201 175 52 17 chr4 36545725 36545783 -119084337 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 6 863 186 43 0 0 chr4 36545901 36545924 -119084196 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 863 396 0 0 0 chr4 36545926 36545970 -119084150 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 6 863 306 83 0 94 chr4 36545987 36546040 -119084080 - HAL1-3A_ME LINE L1 -846 2012 1965 6 863 1011 101 0 0 chr4 36546765 36546933 -119083187 + (TC)n Simple_repeat Simple_repeat 2 169 0 6 863 346 352 9 0 chr4 36547113 36547221 -119082899 + PB1D10 SINE Alu 8 116 -1 6 863 417 336 52 42 chr4 36548215 36548501 -119081619 - Lx8 LINE L1 0 7473 7185 6 863 347 312 58 7 chr4 36548521 36548676 -119081444 - Lx8 LINE L1 -374 7099 6937 6 863 446 303 48 18 chr4 36548867 36549035 -119081085 + Charlie1b DNA MER1_type 69 241 -282 6 863 891 78 0 0 chr4 36549355 36549484 -119080636 + (CA)n Simple_repeat Simple_repeat 2 130 0 6 863 673 312 34 26 chr4 36549617 36550005 -119080115 + Lx8 LINE L1 4624 5014 -866 6 863 797 280 61 18 chr4 36549999 36550279 -119079841 - Lx9 LINE L1 -250 7394 7103 7 863 676 215 86 39 chr4 36550271 36550503 -119079617 + Lx9 LINE L1 7392 7634 -10 7 863 3355 209 24 26 chr4 36550505 36551187 -119078933 - Lx5 LINE L1 -7 7043 6364 7 863 470 256 153 56 chr4 36551206 36551541 -119078579 + RLTR26 LTR ERVK 5 417 -225 7 863 762 238 0 51 chr4 36551777 36551954 -119078166 - Lx5 LINE L1 -698 6352 6185 7 863 1202 303 31 54 chr4 36552084 36552907 -119077213 + Lx8 LINE L1 5076 5913 -1560 6 863 32117 4 1 1 chr4 36552981 36559042 -119071078 - L1Md_A LINE L1 0 6582 524 7 863 1914 232 158 40 chr4 36559417 36560087 -119070033 + RLTR40 LTR ERVK 38 786 -31 7 863 3426 299 30 34 chr4 36560110 36561358 -119068762 + Lx8 LINE L1 6230 7472 -1 6 863 186 275 106 32 chr4 36561360 36561454 -119068666 - L2a LINE L2 -99 3327 3227 7 863 23 33 0 0 chr4 36561955 36561985 -119068135 + AT_rich Low_complexity Low_complexity 1 30 0 7 863 231 227 15 15 chr4 36562401 36562468 -119067652 - Lx6 LINE L1 -2 7458 7392 7 863 441 0 0 0 chr4 36562689 36562738 -119067382 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 863 890 154 13 0 chr4 36563100 36563256 -119066864 + URR1A DNA MER1_type 69 226 0 7 863 1471 191 38 16 chr4 36563706 36564026 -119066094 + ORR1A2 LTR MaLR 1 327 0 8 863 1411 274 13 21 chr4 36566295 36566675 -119063445 - Lx6 LINE L1 -30 7430 7054 8 863 271 296 83 0 chr4 36566723 36566831 -119063289 + PB1D10 SINE Alu 1 117 0 8 863 186 209 0 0 chr4 36566872 36566915 -119063205 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 863 440 181 96 0 chr4 36567453 36567547 -119062573 - RMER5 LTR ERV1 -45 489 387 8 863 821 175 6 0 chr4 36567547 36567713 -119062407 + T-rich Low_complexity Low_complexity 3 169 0 8 863 910 264 83 37 chr4 36567720 36568070 -119062050 - RMER5 LTR ERV1 -156 378 13 8 863 2703 139 9 0 chr4 36568283 36568722 -119061398 - L1_Mus3 LINE L1 -1 6637 6195 8 864 1366 185 0 4 chr4 36569232 36569503 -119060617 - Lx LINE L1 0 6654 6385 8 864 12685 217 51 12 chr4 36569784 36570911 -119059209 + Lx5 LINE L1 918 2046 -3831 8 864 189 0 0 0 chr4 36570911 36570932 -119059188 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 864 369 0 0 0 chr4 36570932 36570972 -119059148 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 864 12685 200 66 15 chr4 36570972 36571922 -119058198 + Lx5 LINE L1 2047 3065 -2812 8 864 260 27 0 26 chr4 36571922 36571960 -119058160 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 9 864 12685 200 66 15 chr4 36571960 36572346 -119057774 + Lx5 LINE L1 3066 3475 -2402 8 864 432 0 0 0 chr4 36572346 36572394 -119057726 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 9 864 12685 200 66 15 chr4 36572394 36573371 -119056749 + Lx5 LINE L1 3476 4521 -1356 8 864 2946 208 50 13 chr4 36573399 36573678 -119056442 + Lx5 LINE L1 5142 5441 -436 8 864 279 0 0 0 chr4 36573678 36573709 -119056411 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 864 3177 262 80 15 chr4 36573709 36575199 -119054921 + Lx5 LINE L1 5442 7053 -5 8 864 270 0 0 0 chr4 36575472 36575502 -119054618 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 864 487 329 39 25 chr4 36575539 36575823 -119054297 - B4A SINE B4 -4 288 1 9 864 2781 51 25 0 chr4 36575984 36576338 -119053782 - L1_Mus1 LINE L1 -517 6050 5688 9 864 1527 99 0 0 chr4 36576337 36576539 -119053581 + L1_Mus1 LINE L1 6048 6249 -318 9 864 252 22 43 22 chr4 36576684 36576730 -119053390 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 864 1125 82 0 0 chr4 36576736 36576883 -119053237 - B1_Mm SINE Alu 0 147 1 9 864 222 37 0 0 chr4 36577086 36577113 -119053007 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 864 213 39 0 0 chr4 36577358 36577384 -119052736 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 1 864 432 51 0 0 chr4 36577477 36577536 -119052584 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 864 358 325 0 0 chr4 36577730 36577807 -119052313 - RSINE1 SINE B4 -61 104 28 1 864 1742 195 237 35 chr4 36578192 36578766 -119051354 - RMER6C LTR ERVK 0 690 1 1 864 191 103 0 25 chr4 36579252 36579292 -119050828 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 1 864 21 0 0 0 chr4 36579444 36579465 -119050655 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 21 0 0 0 chr4 36579758 36579779 -119050341 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 1271 213 75 4 chr4 36580557 36580812 -119049308 + ORR1B2 LTR MaLR 94 366 -1 1 864 448 263 1 0 chr4 36581250 36581346 -119048774 - PB1D9 SINE Alu -53 97 1 1 864 244 351 19 62 chr4 36581468 36581629 -119048491 + MT2B2 LTR ERVL 116 269 -315 1 864 487 237 60 9 chr4 36581526 36581654 -119048466 + B1F SINE Alu 8 150 0 1 864 204 40 0 0 chr4 36583052 36583077 -119047043 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 864 1414 347 51 8 chr4 36584702 36585352 -119044768 - Lx8 LINE L1 -321 7152 6475 1 864 1177 48 0 14 chr4 36585554 36585702 -119044418 - B1_Mm SINE Alu 0 147 2 1 864 217 330 25 55 chr4 36586418 36586594 -119043526 - MIR SINE MIR -68 200 12 1 864 493 314 10 60 chr4 36586820 36587030 -119043090 + B3 SINE B2 1 185 -8 1 864 501 327 58 19 chr4 36587105 36587261 -119042859 + RSINE1 SINE B4 4 165 0 1 864 21 71 0 0 chr4 36589054 36589096 -119041024 + AT_rich Low_complexity Low_complexity 1 42 0 1 864 234 306 106 120 chr4 36589496 36589541 -119040579 + MLT2C1 LTR ERVL 179 206 -191 1 864 1822 142 49 20 chr4 36589541 36589886 -119040234 + Lx LINE L1 6293 6647 -7 1 864 234 306 106 120 chr4 36589886 36590048 -119040072 + MLT2C1 LTR ERVL 207 383 -14 1 864 26 30 0 0 chr4 36590799 36590832 -119039288 + AT_rich Low_complexity Low_complexity 1 33 0 1 864 281 331 57 88 chr4 36591349 36591541 -119038579 - B3 SINE B2 -13 203 18 1 864 26 50 0 0 chr4 36591686 36591726 -119038394 + AT_rich Low_complexity Low_complexity 1 40 0 1 864 270 0 0 0 chr4 36591820 36591850 -119038270 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 864 228 35 0 0 chr4 36592032 36592061 -119038059 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 864 576 77 0 0 chr4 36592061 36592138 -119037982 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 864 305 225 112 0 chr4 36592149 36592229 -119037891 - B1F SINE Alu -41 108 20 1 864 28 0 0 0 chr4 36592586 36592614 -119037506 + AT_rich Low_complexity Low_complexity 1 28 0 1 864 25 51 0 0 chr4 36592655 36592694 -119037426 + AT_rich Low_complexity Low_complexity 1 39 0 1 864 180 0 0 0 chr4 36593115 36593135 -119036985 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 864 27 62 0 0 chr4 36593268 36593316 -119036804 + AT_rich Low_complexity Low_complexity 1 48 0 1 864 258 386 61 90 chr4 36596947 36597192 -119032928 + B4 SINE B4 41 278 -14 1 864 453 36 0 0 chr4 36597194 36597249 -119032871 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 864 1159 350 60 10 chr4 36597757 36597930 -119032190 + Lx8 LINE L1 6661 6832 -641 1 864 1394 49 49 5 chr4 36597930 36598090 -119032030 + B2_Mm1a SINE B2 2 160 -33 1 864 396 0 0 0 chr4 36598090 36598134 -119031986 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 864 1394 49 49 5 chr4 36598134 36598157 -119031963 + B2_Mm1a SINE B2 161 192 -1 1 864 1159 350 60 10 chr4 36598157 36598496 -119031624 + Lx8 LINE L1 6833 7199 -274 1 864 212 154 0 71 chr4 36598887 36598957 -119031163 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1 864 3642 19 0 0 chr4 36599413 36599835 -119030285 - L1Md_A LINE L1 0 6582 6161 1 864 254 234 62 15 chr4 36600175 36600240 -119029880 - B1_Mur2 SINE Alu -55 94 27 1 864 43 64 0 0 chr4 36600252 36600330 -119029790 + AT_rich Low_complexity Low_complexity 1 78 0 1 864 938 222 196 10 chr4 36600465 36600756 -119029364 - Lx2B LINE L1 -1 6999 6655 1 864 2230 205 81 146 chr4 36600754 36601567 -119028553 + Lx2B LINE L1 5875 6634 -366 1 864 25 65 0 0 chr4 36601915 36601961 -119028159 + AT_rich Low_complexity Low_complexity 1 46 0 1 864 24 0 0 0 chr4 36602065 36602089 -119028031 + AT_rich Low_complexity Low_complexity 1 24 0 1 864 180 0 0 0 chr4 36603557 36603577 -119026543 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 864 229 213 0 0 chr4 36604245 36604292 -119025828 + CT-rich Low_complexity Low_complexity 1 47 0 1 864 639 299 17 39 chr4 36604319 36604500 -119025620 - B3A SINE B2 -13 185 9 1 864 212 204 0 22 chr4 36605670 36605715 -119024405 + (CATA)n Simple_repeat Simple_repeat 4 47 0 1 864 208 135 0 0 chr4 36606363 36606400 -119023720 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 864 183 391 76 42 chr4 36606790 36606934 -119023186 - MIRc SINE MIR -49 219 71 1 864 480 318 99 35 chr4 36607074 36607276 -119022844 + MTD LTR MaLR 1 215 -204 1 864 1215 102 0 0 chr4 36607375 36607552 -119022568 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 1 864 240 167 0 0 chr4 36607554 36607602 -119022518 + C-rich Low_complexity Low_complexity 4 51 0 1 864 205 140 17 17 chr4 36607605 36607663 -119022457 + T-rich Low_complexity Low_complexity 2 59 0 1 864 787 293 52 8 chr4 36607690 36607938 -119022182 - MTD LTR MaLR -151 268 10 1 864 274 226 8 21 chr4 36608006 36608081 -119022039 + MTD LTR MaLR 288 419 0 1 864 342 0 0 0 chr4 36608827 36608865 -119021255 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 864 638 168 0 21 chr4 36608980 36609120 -119021000 + Lx3A LINE L1 6837 6973 -8 1 864 3750 48 0 0 chr4 36609226 36609717 -119020403 - L1_Mus1 LINE L1 0 6567 6105 1 864 1194 166 51 8 chr4 36611075 36611312 -119018808 + Lx3B LINE L1 6725 6971 -2 1 864 188 0 74 0 chr4 36611324 36611351 -119018769 + (TAAAAA)n Simple_repeat Simple_repeat 4 32 0 1 864 1180 189 194 80 chr4 36611913 36612315 -119017805 + Lx4B LINE L1 6606 7053 -5 1 864 350 380 79 61 chr4 36613134 36613414 -119016706 - B4A SINE B4 0 292 8 1 864 540 0 0 0 chr4 36614176 36614236 -119015884 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 864 21 0 0 0 chr4 36614355 36614376 -119015744 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 908 126 17 6 chr4 36617172 36617347 -119012773 + (GA)n Simple_repeat Simple_repeat 2 178 0 1 864 1924 266 61 12 chr4 36617386 36617485 -119012635 - Lx6 LINE L1 -53 7407 7304 1 864 1184 109 16 5 chr4 36617485 36617679 -119012441 - L1Md_F2 LINE L1 -1 6581 6386 1 864 1924 266 61 12 chr4 36617679 36618073 -119012047 - Lx6 LINE L1 -157 7303 6891 1 864 362 351 66 36 chr4 36618291 36618560 -119011560 + B4A SINE B4 2 271 -21 1 864 395 108 0 0 chr4 36618622 36618680 -119011440 - L1_Mm LINE L1 -299 5578 5521 1 864 8188 33 1 4 chr4 36618681 36619658 -119010462 + L1Md_F2 LINE L1 5594 6567 -15 1 864 28 29 0 0 chr4 36619658 36619693 -119010427 + AT_rich Low_complexity Low_complexity 1 35 0 1 864 445 163 47 0 chr4 36620058 36620144 -119009976 + L1_Mur2 LINE L1 21 110 -6602 1 864 2825 168 19 11 chr4 36620158 36620688 -119009432 + Lx4A LINE L1 6522 7055 -3 1 864 183 42 0 0 chr4 36620692 36620716 -119009404 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1 864 811 192 0 40 chr4 36620726 36620878 -119009242 + B1_Mur3 SINE Alu 3 148 -1 1 864 21 0 0 0 chr4 36620964 36620985 -119009135 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 225 329 112 12 chr4 36621975 36622021 -119008099 - B2_Mm2 SINE B2 -6 189 136 1 864 330 26 0 0 chr4 36622021 36622060 -119008060 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 864 316 295 202 1 chr4 36622060 36622182 -119007938 - B3A SINE B2 -55 143 4 1 864 29 70 0 0 chr4 36623526 36623583 -119006537 + AT_rich Low_complexity Low_complexity 1 57 0 1 864 31 44 0 0 chr4 36623916 36623961 -119006159 + AT_rich Low_complexity Low_complexity 1 45 0 1 864 480 18 0 0 chr4 36625013 36625070 -119005050 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 864 1703 29 5 0 chr4 36625669 36625879 -119004241 - L1Md_A LINE L1 -1 6581 6371 1 864 27 62 0 0 chr4 36626159 36626207 -119003913 + AT_rich Low_complexity Low_complexity 1 48 0 1 864 428 343 45 11 chr4 36626302 36626479 -119003641 + MTE2b LTR MaLR 1 183 -196 1 864 1630 103 12 4 chr4 36626482 36626735 -119003385 + L1_Mus3 LINE L1 6381 6635 -3 1 864 682 275 64 10 chr4 36626881 36627083 -119003037 + B4A SINE B4 8 220 -72 1 864 427 263 32 0 chr4 36627113 36627208 -119002912 - Lx7 LINE L1 -550 7146 7049 1 864 200 132 26 0 chr4 36627208 36627246 -119002874 + T-rich Low_complexity Low_complexity 3 41 0 1 864 510 17 0 0 chr4 36627731 36627790 -119002330 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 864 450 324 7 0 chr4 36628461 36628606 -119001514 + RSINE1 SINE B4 12 157 -8 1 864 191 103 26 0 chr4 36628789 36628828 -119001292 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 1 864 321 26 0 0 chr4 36628836 36628874 -119001246 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 864 218 29 0 56 chr4 36629442 36629478 -119000642 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 1 864 324 0 0 0 chr4 36630236 36630272 -118999848 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 864 336 48 0 0 chr4 36630272 36630313 -118999807 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 864 228 365 88 19 chr4 36630524 36630683 -118999437 - Helitron3Na_Mam RC Helitron -73 413 244 1 864 21 0 0 0 chr4 36632068 36632089 -118998031 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 323 365 171 14 chr4 36633220 36633430 -118996690 + B4A SINE B4 32 274 -18 1 864 672 13 0 0 chr4 36633482 36633559 -118996561 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 864 459 0 0 0 chr4 36634393 36634444 -118995676 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 864 617 112 26 8 chr4 36634743 36634860 -118995260 - L1_Mus3 LINE L1 -13 6625 6507 1 864 254 346 99 8 chr4 36635352 36635483 -118994637 - MER5A DNA MER1_type -3 186 44 2 864 239 377 16 8 chr4 36636604 36636727 -118993393 + L3 LINE CR1 3570 3693 -796 2 864 195 42 0 0 chr4 36637037 36637061 -118993059 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2 864 525 200 90 18 chr4 36637063 36637246 -118992874 - Lx4B LINE L1 -23 7035 6751 2 864 306 0 0 0 chr4 36637246 36637280 -118992840 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 864 1277 198 0 4 chr4 36637281 36637514 -118992606 - Lx4B LINE L1 -346 6712 6481 2 864 247 182 0 0 chr4 36637514 36637558 -118992562 + Lx4B LINE L1 6172 6215 -843 2 864 631 257 79 169 chr4 36637558 36637848 -118992272 - MTD LTR MaLR -42 377 114 2 864 4527 202 63 30 chr4 36637878 36638891 -118991229 + Lx5 LINE L1 6004 7050 0 2 864 674 124 21 14 chr4 36639032 36639157 -118990963 - Lx3C LINE L1 -426 6583 6464 2 864 28 61 0 0 chr4 36639958 36640007 -118990113 + AT_rich Low_complexity Low_complexity 1 49 0 2 864 27 29 0 0 chr4 36640119 36640153 -118989967 + AT_rich Low_complexity Low_complexity 1 34 0 2 864 1077 95 0 0 chr4 36640733 36640880 -118989240 - B1_Mus1 SINE Alu 0 148 2 2 864 369 0 0 0 chr4 36641710 36641751 -118988369 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 864 1666 177 0 13 chr4 36641752 36642056 -118988064 - Lx3A LINE L1 -14 6967 6668 2 864 1078 69 14 0 chr4 36642243 36642388 -118987732 + B1_Mm SINE Alu 1 147 0 2 864 226 270 53 13 chr4 36642545 36642620 -118987500 + MLT1D LTR MaLR 86 163 -342 2 864 549 44 0 0 chr4 36642625 36642693 -118987427 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 864 339 25 0 0 chr4 36642693 36642732 -118987388 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 864 250 26 51 0 chr4 36643329 36643368 -118986752 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2 864 361 283 16 70 chr4 36643617 36643746 -118986374 + B1F SINE Alu 27 148 -1 2 864 216 337 19 19 chr4 36643748 36643851 -118986269 + GA-rich Low_complexity Low_complexity 5 107 0 2 864 231 364 0 0 chr4 36643756 36643833 -118986287 + G-rich Low_complexity Low_complexity 4 80 0 2 864 242 167 17 0 chr4 36644441 36644501 -118985619 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2 864 29 60 0 0 chr4 36644769 36644819 -118985301 + AT_rich Low_complexity Low_complexity 1 50 0 2 864 667 343 98 53 chr4 36644834 36644883 -118985237 + MER77 LTR ERVL 54 99 -508 2 864 2465 36 3 7 chr4 36644883 36645188 -118984932 - L1Md_F2 LINE L1 0 6582 6279 2 864 667 343 98 53 chr4 36645188 36645630 -118984490 + MER77 LTR ERVL 100 567 -40 2 864 21 0 0 0 chr4 36646735 36646756 -118983364 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 217 372 26 9 chr4 36647198 36647312 -118982808 - MIR SINE MIR -9 253 138 2 864 8049 103 81 22 chr4 36647756 36649564 -118980556 - Lx3_Mus LINE L1 -1 7008 5103 2 864 464 374 26 41 chr4 36649802 36649997 -118980123 + B4A SINE B4 3 194 -98 2 864 246 233 0 0 chr4 36650025 36650111 -118980009 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 864 23 0 0 0 chr4 36650301 36650324 -118979796 + AT_rich Low_complexity Low_complexity 1 23 0 2 864 23 33 0 0 chr4 36650576 36650606 -118979514 + AT_rich Low_complexity Low_complexity 1 30 0 2 864 21 0 0 0 chr4 36650625 36650646 -118979474 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 361 301 19 10 chr4 36650733 36650837 -118979283 + PB1D10 SINE Alu 12 116 -1 2 864 226 299 0 107 chr4 36651557 36651688 -118978432 + MamGypLTR1c LTR Gypsy 144 260 -543 2 864 1013 83 14 0 chr4 36655647 36655792 -118974328 - B1_Mus1 SINE Alu 0 148 2 2 864 198 71 0 0 chr4 36656715 36656743 -118973377 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 864 486 0 0 0 chr4 36657060 36657114 -118973006 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 864 1909 112 3 3 chr4 36657387 36657674 -118972446 + Lx3_Mus LINE L1 6712 6998 -11 2 864 696 127 0 0 chr4 36657704 36657814 -118972306 + (TCCC)n Simple_repeat Simple_repeat 3 112 0 2 864 396 0 0 0 chr4 36657814 36657858 -118972262 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 864 504 302 71 57 chr4 36658266 36658536 -118971584 - MLT1-int LTR MaLR -113 1622 1388 2 864 911 142 0 6 chr4 36658546 36658723 -118971397 + (TA)n Simple_repeat Simple_repeat 2 177 0 2 864 279 0 0 0 chr4 36658723 36658754 -118971366 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 864 609 330 64 14 chr4 36659160 36659378 -118970742 - MLT1-int LTR MaLR -652 719 491 2 864 297 0 0 0 chr4 36659436 36659469 -118970651 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 864 1020 89 0 0 chr4 36659470 36659605 -118970515 - B1_Mm SINE Alu -12 135 1 2 864 301 276 98 68 chr4 36659627 36659759 -118970361 + B3 SINE B2 1 136 -80 2 864 947 266 9 0 chr4 36660288 36660506 -118969614 - URR1A DNA MER1_type 0 226 7 2 864 22 0 0 0 chr4 36661280 36661302 -118968818 + AT_rich Low_complexity Low_complexity 1 22 0 2 864 21 0 0 0 chr4 36661567 36661588 -118968532 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 26 0 0 0 chr4 36662387 36662413 -118967707 + AT_rich Low_complexity Low_complexity 1 26 0 2 864 240 59 0 0 chr4 36662838 36662872 -118967248 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 864 406 369 20 0 chr4 36663444 36663593 -118966527 + Tigger10 DNA Tigger 678 829 -1014 2 864 21 0 0 0 chr4 36666382 36666403 -118963717 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 2825 211 86 6 chr4 36666562 36667247 -118962873 + L1_Mur3 LINE L1 298 1037 -6691 2 864 359 319 45 54 chr4 36667398 36667620 -118962500 + RLTR14 LTR ERV1 163 382 0 2 864 640 216 6 6 chr4 36667640 36667803 -118962317 + L1_Mur3 LINE L1 1206 1368 -4512 2 864 2813 189 31 18 chr4 36667948 36668318 -118961802 + L1_Mur3 LINE L1 1374 1753 -4127 2 864 2899 33 44 6 chr4 36668318 36668682 -118961438 + L1Md_F3 LINE L1 6206 6583 -1 2 864 2813 189 31 18 chr4 36668682 36668986 -118961134 + L1_Mur3 LINE L1 1754 2057 -3823 2 864 405 0 0 0 chr4 36668987 36669032 -118961088 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 864 450 0 0 0 chr4 36669038 36669088 -118961032 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 864 2210 106 12 3 chr4 36669123 36669454 -118960666 - Lx LINE L1 -251 6403 6070 2 864 912 303 89 20 chr4 36669945 36670383 -118959737 - Charlie1a DNA MER1_type -982 473 6 2 864 590 322 39 0 chr4 36671410 36671570 -118958550 - B3 SINE B2 0 216 49 2 864 1953 197 5 3 chr4 36671570 36671957 -118958163 - Lx LINE L1 -1 6653 6266 2 864 590 322 39 0 chr4 36671957 36672004 -118958116 - B3 SINE B2 -168 48 2 2 864 1158 75 0 0 chr4 36672143 36672290 -118957830 - B1_Mus2 SINE Alu 0 147 1 2 864 5120 152 17 12 chr4 36674533 36675402 -118954718 + Lx2B LINE L1 5923 6800 -200 2 864 5841 80 20 2 chr4 36679703 36680517 -118949603 + L1_Mus2 LINE L1 5739 6566 0 2 864 1051 113 0 0 chr4 36680534 36680676 -118949444 + B1_Mus1 SINE Alu 1 142 -6 2 864 207 111 0 27 chr4 36680680 36680717 -118949403 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 864 2113 24 4 8 chr4 36680932 36681182 -118948938 + L1_Mm LINE L1 5338 5586 -297 2 864 8435 32 0 0 chr4 36681182 36682176 -118947944 + L1Md_T LINE L1 5587 6580 -2 2 864 27 29 0 0 chr4 36682579 36682613 -118947507 + AT_rich Low_complexity Low_complexity 1 34 0 2 864 518 43 14 0 chr4 36683279 36683348 -118946772 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2 864 585 263 146 0 chr4 36683456 36683593 -118946527 + RSINE1 SINE B4 1 157 -8 2 864 22 0 0 0 chr4 36683632 36683654 -118946466 + AT_rich Low_complexity Low_complexity 1 22 0 2 864 423 0 0 0 chr4 36683731 36683778 -118946342 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 864 729 161 0 0 chr4 36683788 36683918 -118946202 + GA-rich Low_complexity Low_complexity 2 131 0 2 864 1140 182 121 23 chr4 36684590 36684854 -118945266 + Lx4B LINE L1 6706 6995 -63 2 864 504 311 42 47 chr4 36684844 36685080 -118945040 - Lx8 LINE L1 -680 6793 6559 2 864 466 276 181 15 chr4 36685063 36685262 -118944858 + Lx9 LINE L1 6448 6679 -965 2 864 4174 7 0 0 chr4 36685481 36685945 -118944175 + L1Md_T LINE L1 6119 6582 0 2 864 34 0 0 0 chr4 36686013 36686047 -118944073 + AT_rich Low_complexity Low_complexity 1 34 0 2 864 1988 170 12 9 chr4 36686821 36687166 -118942954 + Lx4A LINE L1 6710 7055 -3 2 864 23 0 0 0 chr4 36687166 36687189 -118942931 + AT_rich Low_complexity Low_complexity 1 23 0 2 864 225 154 0 0 chr4 36688131 36688170 -118941950 + A-rich Low_complexity Low_complexity 1 39 0 2 864 3531 10 0 8 chr4 36688957 36689356 -118940764 - MTA_Mm LTR MaLR 0 396 1 2 864 308 287 195 44 chr4 36690153 36690336 -118939784 + MIRb SINE MIR 57 259 -9 2 864 184 208 39 77 chr4 36691161 36691213 -118938907 + L2c LINE L2 3330 3379 -8 2 864 3277 119 0 29 chr4 36692722 36692911 -118937209 + Lx3B LINE L1 5392 5580 -306 2 864 929 126 0 36 chr4 36692911 36693051 -118937069 + B1_Mus1 SINE Alu 1 135 -13 2 864 242 29 0 28 chr4 36693051 36693087 -118937033 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 864 4002 128 19 20 chr4 36693087 36693754 -118936366 + Lx3B LINE L1 5581 6253 -720 2 864 5780 260 91 31 chr4 36693751 36695355 -118934765 + Lx7 LINE L1 5630 7337 -359 2 864 270 0 0 0 chr4 36695355 36695385 -118934735 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 2 864 5780 260 91 31 chr4 36695385 36695508 -118934612 + Lx7 LINE L1 7338 7457 -239 2 864 312 83 0 0 chr4 36695508 36695556 -118934564 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 864 5780 260 91 31 chr4 36695556 36695775 -118934345 + Lx7 LINE L1 7458 7693 -3 2 864 6317 36 1 25 chr4 36697113 36698614 -118931506 - L1Md_A LINE L1 -3918 1965 508 2 864 823 285 116 35 chr4 36698625 36699355 -118930765 - L1MA7 LINE L1 -394 5897 5089 2 864 212 0 0 35 chr4 36699355 36699384 -118930736 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 864 326 284 138 36 chr4 36699384 36699613 -118930507 - L1MA7 LINE L1 -1052 5088 4846 2 864 1843 285 38 16 chr4 36699556 36700109 -118930011 + Lx6 LINE L1 6909 7460 0 2 865 398 251 49 72 chr4 36700193 36700510 -118929610 - L1MA7 LINE L1 -1336 4807 4495 2 865 202 176 78 0 chr4 36700694 36700745 -118929375 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 2 865 1643 90 0 0 chr4 36700903 36701126 -118928994 + L1_Mus1 LINE L1 6345 6567 0 2 865 2544 120 12 42 chr4 36701812 36702222 -118927898 + MTB LTR MaLR 3 400 0 3 865 399 284 121 55 chr4 36702750 36703007 -118927113 + L1M2 LINE L1 4750 5023 -1120 3 865 389 211 22 11 chr4 36703080 36703171 -118926949 + U6 snRNA snRNA 1 92 -15 3 865 247 317 66 17 chr4 36703171 36703379 -118926741 + L1_Mur2 LINE L1 5062 5290 -596 3 865 926 102 0 7 chr4 36703705 36703843 -118926277 - L1_Mus3 LINE L1 -354 6284 6148 3 865 586 86 11 21 chr4 36703837 36703932 -118926188 + L1_Mus3 LINE L1 5924 6017 -619 3 865 360 111 0 0 chr4 36703981 36704035 -118926085 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 865 252 143 0 0 chr4 36704088 36704144 -118925976 + (TTAA)n Simple_repeat Simple_repeat 4 59 0 3 865 2076 116 39 28 chr4 36704297 36704652 -118925468 + L1_Mus3 LINE L1 6280 6638 0 3 865 587 316 29 51 chr4 36705021 36705348 -118924772 - Lx8 LINE L1 0 7473 7092 3 865 22 35 0 0 chr4 36705822 36705851 -118924269 + AT_rich Low_complexity Low_complexity 1 29 0 3 865 240 330 11 0 chr4 36705915 36706003 -118924117 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 865 267 105 17 34 chr4 36706634 36706693 -118923427 + GA-rich Low_complexity Low_complexity 5 62 0 3 865 228 86 0 0 chr4 36707418 36707453 -118922667 + (CATA)n Simple_repeat Simple_repeat 4 38 0 3 865 467 104 0 0 chr4 36707627 36707704 -118922416 - L1_Mus2 LINE L1 -2 6564 6488 3 865 5817 126 21 1 chr4 36710074 36710996 -118919124 + Lx3_Mus LINE L1 6070 7009 0 3 865 411 359 0 34 chr4 36711010 36711157 -118918963 + RSINE1 SINE B4 3 144 -21 3 865 593 299 14 0 chr4 36711224 36711371 -118918749 + RSINE1 SINE B4 11 159 -6 3 865 30 0 0 0 chr4 36711381 36711411 -118918709 + AT_rich Low_complexity Low_complexity 1 30 0 3 865 312 309 40 62 chr4 36711488 36711664 -118918456 - MER58A DNA MER1_type -10 214 43 3 865 21 71 0 0 chr4 36713113 36713155 -118916965 + AT_rich Low_complexity Low_complexity 1 42 0 3 865 1034 276 73 88 chr4 36714702 36715087 -118915033 + MTE2a LTR MaLR 1 379 0 3 865 288 0 0 0 chr4 36715828 36715860 -118914260 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 865 297 35 33 50 chr4 36715921 36715981 -118914139 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 3 865 392 290 0 11 chr4 36715983 36716077 -118914043 - B1_Mur3 SINE Alu -54 95 3 3 865 590 196 71 0 chr4 36716117 36716229 -118913891 - B3 SINE B2 -86 130 11 3 865 23853 6 0 1 chr4 36716586 36719288 -118910832 + L1_Mm LINE L1 2885 5586 -297 3 865 8914 8 0 0 chr4 36719288 36720284 -118909836 + L1Md_A LINE L1 5587 6582 0 3 865 207 325 139 36 chr4 36720805 36720971 -118909149 + L2c LINE L2 3165 3347 -40 3 865 22 0 0 0 chr4 36721512 36721534 -118908586 + AT_rich Low_complexity Low_complexity 1 22 0 3 865 386 261 83 22 chr4 36721624 36721804 -118908316 - L1_Rod LINE L1 -3664 2183 1993 3 865 555 351 54 14 chr4 36722107 36722477 -118907643 - Lx8 LINE L1 -134 7339 6955 3 865 1814 182 31 72 chr4 36722495 36722829 -118907291 - MTC LTR MaLR -24 397 68 3 865 3047 128 35 2 chr4 36722829 36723308 -118906812 - Lx3_Mus LINE L1 0 7009 6515 3 865 1814 182 31 72 chr4 36723308 36723387 -118906733 - MTC LTR MaLR -354 67 1 3 865 4456 100 29 8 chr4 36723523 36724181 -118905939 + Lx3_Mus LINE L1 6330 7001 -8 3 865 2965 44 0 0 chr4 36725756 36726123 -118903997 + L1_Mm LINE L1 4181 4547 -1336 3 865 275 190 38 12 chr4 36726135 36726215 -118903905 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 3 865 530 71 12 0 chr4 36727273 36727357 -118902763 + (GTTTG)n Simple_repeat Simple_repeat 5 89 0 3 865 1059 103 0 0 chr4 36727358 36727503 -118902617 - B1_Mus2 SINE Alu -2 145 1 3 865 3516 122 24 2 chr4 36728088 36728622 -118901498 - L1_Mus3 LINE L1 -36 5847 5302 3 865 5560 95 10 3 chr4 36728622 36729406 -118900714 + L1_Mus3 LINE L1 5849 6638 0 3 865 1962 243 40 6 chr4 36729978 36730455 -118899665 - Lx5 LINE L1 -1 7049 6557 3 865 31 44 0 0 chr4 36730630 36730675 -118899445 + AT_rich Low_complexity Low_complexity 1 45 0 3 865 259 293 111 0 chr4 36730793 36730892 -118899228 - L1MC4a LINE L1 -239 7643 7534 3 865 961 24 6 57 chr4 36730955 36731130 -118898990 + (TCTCC)n Simple_repeat Simple_repeat 2 167 0 3 865 183 273 24 94 chr4 36733784 36733869 -118896251 - L3 LINE CR1 -472 4017 3939 3 865 837 188 217 10 chr4 36734853 36735148 -118894972 - Lx9 LINE L1 -3 7641 7286 3 865 4040 122 12 20 chr4 36735174 36735883 -118894237 + L1Md_F2 LINE L1 5943 6582 0 3 865 1253 180 102 0 chr4 36735892 36736137 -118893983 + L1_Mur1 LINE L1 5449 5718 -168 3 865 2629 272 95 16 chr4 36736136 36737130 -118892990 + Lx3A LINE L1 5914 6918 -63 3 865 353 343 69 72 chr4 36737244 36737593 -118892527 - L1ME3 LINE L1 -79 6083 5736 3 865 316 376 72 22 chr4 36738019 36738378 -118891742 - L1MEg LINE L1 -5052 1032 656 3 865 566 262 103 20 chr4 36739002 36739197 -118890923 - B3 SINE B2 -5 211 1 3 865 5318 132 43 5 chr4 36740784 36741672 -118888448 - Lx3B LINE L1 0 6973 6052 3 865 3118 110 9 0 chr4 36741685 36742193 -118887927 + Lx3B LINE L1 5542 6050 -923 3 865 207 69 0 0 chr4 36743251 36743280 -118886840 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 865 266 327 16 81 chr4 36743322 36743445 -118886675 + ORR1D2 LTR MaLR 20 134 -236 3 865 469 285 117 0 chr4 36744527 36744741 -118885379 + L1MD1 LINE L1 5396 5634 -725 3 865 244 270 14 0 chr4 36744828 36744902 -118885218 + L1MD1 LINE L1 6069 6143 -99 3 865 879 329 35 0 chr4 36745382 36745692 -118884428 + ORR1D2 LTR MaLR 2 322 -48 3 865 260 217 16 48 chr4 36745732 36745795 -118884325 + polypyrimidine Low_complexity Low_complexity 2 62 0 3 865 23 0 0 0 chr4 36746204 36746227 -118883893 + AT_rich Low_complexity Low_complexity 1 23 0 3 865 646 302 69 0 chr4 36746407 36746609 -118883511 + B3 SINE B2 1 216 0 3 865 287 333 126 0 chr4 36746917 36747004 -118883116 - B1F SINE Alu -29 120 23 3 865 276 215 38 12 chr4 36747270 36747350 -118882770 + L1MC4a LINE L1 5968 6049 -1833 3 865 450 328 83 54 chr4 36747800 36748273 -118881847 - L1MC1 LINE L1 -38 6306 5802 3 865 195 114 0 0 chr4 36748811 36748846 -118881274 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 865 2216 59 10 7 chr4 36748923 36749212 -118880908 - L1_Mus1 LINE L1 0 6567 6278 3 865 315 225 152 0 chr4 36749255 36749453 -118880667 - Lx9 LINE L1 -7 7637 7392 3 865 1211 234 148 45 chr4 36750653 36751178 -118878942 - RMER6D LTR ERVK -6 714 119 3 865 21 36 0 0 chr4 36751506 36751534 -118878586 + AT_rich Low_complexity Low_complexity 1 28 0 3 865 230 200 33 16 chr4 36752438 36752499 -118877621 + L1_Mm LINE L1 5391 5452 -431 3 865 262 111 0 0 chr4 36752503 36752539 -118877581 - tRNA-Val-GTG tRNA tRNA -40 36 1 3 865 1608 132 132 0 chr4 36752546 36752818 -118877302 + L1_Mm LINE L1 5413 5720 -163 3 865 210 37 0 0 chr4 36752829 36752856 -118877264 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 865 1233 57 0 0 chr4 36752856 36753015 -118877105 - B2_Mm1a SINE B2 -33 160 2 3 865 6326 101 17 14 chr4 36753015 36753940 -118876180 + L1_Mus4 LINE L1 5706 6633 -3 3 865 359 285 162 18 chr4 36753927 36754235 -118875885 + Lx8 LINE L1 5467 5765 -82 3 865 3334 194 129 40 chr4 36754233 36755124 -118874996 + Lx2B LINE L1 6012 6981 -19 3 865 254 296 12 23 chr4 36755134 36755251 -118874869 + Lx8 LINE L1 5798 5913 -1560 3 865 942 334 120 50 chr4 36755594 36756441 -118873679 + Lx8 LINE L1 6086 6992 -481 3 865 21 36 0 0 chr4 36756599 36756627 -118873493 + AT_rich Low_complexity Low_complexity 1 28 0 3 865 1181 54 0 0 chr4 36757623 36757770 -118872350 + B1_Mus1 SINE Alu 2 148 0 3 865 240 59 0 0 chr4 36757770 36757804 -118872316 + (A)n Simple_repeat Simple_repeat 1 34 0 3 865 474 342 78 30 chr4 36757833 36758065 -118872055 + B4A SINE B4 1 243 -49 3 865 468 0 0 0 chr4 36758075 36758127 -118871993 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 865 2339 181 98 79 chr4 36758129 36758712 -118871408 - RMER19B LTR ERVK -308 594 1 3 865 183 42 0 0 chr4 36759128 36759152 -118870968 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 865 28 29 0 0 chr4 36759331 36759366 -118870754 + AT_rich Low_complexity Low_complexity 1 35 0 3 865 439 281 103 41 chr4 36760802 36760947 -118869173 + RSINE1 SINE B4 12 165 0 3 865 451 216 454 11 chr4 36761034 36761217 -118868903 + Lx4B LINE L1 6727 6990 -68 3 865 522 355 34 37 chr4 36763839 36764219 -118865901 - Lx8 LINE L1 -101 7372 6994 3 865 200 204 0 22 chr4 36764222 36764267 -118865853 + G-rich Low_complexity Low_complexity 1 44 0 3 865 1181 78 0 4 chr4 36764267 36764511 -118865609 + (GAA)n Simple_repeat Simple_repeat 1 242 0 3 865 914 112 0 7 chr4 36765077 36765229 -118864891 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 3 865 907 328 86 41 chr4 36765586 36765783 -118864337 + Lx9 LINE L1 6757 6956 -688 3 865 267 103 0 0 chr4 36765783 36765822 -118864298 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 865 907 328 86 41 chr4 36765822 36766289 -118863831 + Lx9 LINE L1 6957 7450 -194 3 865 522 0 0 0 chr4 36766290 36766348 -118863772 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 865 27 29 0 0 chr4 36766466 36766500 -118863620 + AT_rich Low_complexity Low_complexity 1 34 0 3 865 185 186 67 44 chr4 36766866 36766911 -118863209 + MIRm SINE MIR 130 175 -101 3 865 35 24 0 0 chr4 36766998 36767040 -118863080 + AT_rich Low_complexity Low_complexity 1 42 0 3 865 22 0 0 0 chr4 36768203 36768225 -118861895 + AT_rich Low_complexity Low_complexity 1 22 0 3 865 24 0 0 0 chr4 36768283 36768307 -118861813 + AT_rich Low_complexity Low_complexity 1 24 0 3 865 21 57 0 0 chr4 36768442 36768477 -118861643 + AT_rich Low_complexity Low_complexity 1 35 0 3 865 698 320 80 39 chr4 36768896 36769234 -118860886 + MTEb LTR MaLR 28 379 0 3 865 520 289 103 22 chr4 36769846 36770069 -118860051 - Lx8 LINE L1 -163 7310 7070 3 865 659 171 6 0 chr4 36771183 36771341 -118858779 + (TA)n Simple_repeat Simple_repeat 1 159 0 3 865 700 78 259 0 chr4 36771356 36771472 -118858648 + B1_Mus1 SINE Alu 2 147 -1 4 865 405 39 0 0 chr4 36771735 36771786 -118858334 + (TAA)n Simple_repeat Simple_repeat 2 52 0 4 865 1743 196 52 27 chr4 36771975 36772383 -118857737 + MTC LTR MaLR 2 419 -2 4 865 229 51 51 0 chr4 36773456 36773495 -118856625 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 865 270 56 0 0 chr4 36774601 36774637 -118855483 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 865 350 367 33 7 chr4 36774639 36774790 -118855330 - B3A SINE B2 -43 155 1 4 865 259 376 108 0 chr4 36775771 36775965 -118854155 - MIRb SINE MIR -16 252 38 4 865 443 215 12 21 chr4 36776513 36776620 -118853500 - Lx6 LINE L1 -1322 6374 6268 4 865 1501 194 45 18 chr4 36776627 36776963 -118853157 - RMER6C LTR ERVK 0 690 346 4 865 238 115 33 0 chr4 36777029 36777090 -118853030 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 4 865 1602 34 19 5 chr4 36777143 36777352 -118852768 - L1Md_F3 LINE L1 -1 6583 6372 4 865 551 155 28 46 chr4 36777353 36777461 -118852659 - MT2B LTR ERVL -315 286 181 4 865 2252 230 50 5 chr4 36777505 36778313 -118851807 - Lx6 LINE L1 -1200 6260 5394 4 865 3580 249 22 16 chr4 36778311 36779170 -118850950 + Lx6 LINE L1 6383 7246 -214 4 865 247 269 0 49 chr4 36779168 36779192 -118850928 + Lx6 LINE L1 7207 7229 -231 4 865 935 125 0 14 chr4 36779192 36779338 -118850782 - B1_Mus1 SINE Alu -2 146 3 4 865 247 269 0 49 chr4 36779338 36779395 -118850725 + Lx6 LINE L1 7230 7284 -176 4 865 1130 84 156 10 chr4 36779578 36779789 -118850331 - L1Md_F3 LINE L1 -308 5989 5726 4 865 5655 46 1 1 chr4 36779789 36780486 -118849634 + L1Md_F3 LINE L1 5880 6576 -8 4 865 336 200 31 0 chr4 36780486 36780551 -118849569 - L1_Mus1 LINE L1 -381 6186 6120 4 865 2179 64 0 41 chr4 36780536 36780830 -118849290 + L1_Mus1 LINE L1 6189 6470 -97 4 865 482 250 0 6 chr4 36780837 36781191 -118848929 + (TCTG)n Simple_repeat Simple_repeat 1 352 0 4 865 378 287 13 6 chr4 36781105 36781263 -118848857 + (TATATG)n Simple_repeat Simple_repeat 2 160 0 4 865 229 354 25 0 chr4 36784719 36784798 -118845322 - ID4_ SINE ID 0 83 3 4 865 5539 136 66 6 chr4 36784845 36785803 -118844317 + Lx3A LINE L1 5961 6975 -6 4 865 188 86 0 28 chr4 36785808 36785844 -118844276 + (TAAAAA)n Simple_repeat Simple_repeat 4 38 0 4 865 25 0 0 0 chr4 36787112 36787137 -118842983 + AT_rich Low_complexity Low_complexity 1 25 0 4 865 422 247 90 30 chr4 36787561 36787728 -118842392 - Lx6 LINE L1 -177 7283 7107 4 865 198 0 0 0 chr4 36788311 36788333 -118841787 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 865 324 70 0 0 chr4 36788335 36788378 -118841742 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 865 923 216 37 5 chr4 36788880 36789071 -118841049 - Lx9 LINE L1 -240 7404 7208 4 865 230 340 48 0 chr4 36789278 36789381 -118840739 + Charlie5 DNA MER1_type 2368 2475 -149 4 865 1418 297 11 4 chr4 36789398 36789809 -118840311 - Lx6 LINE L1 -204 7256 6851 4 865 200 161 0 35 chr4 36789809 36789867 -118840253 + (TCTCTG)n Simple_repeat Simple_repeat 5 60 0 4 865 1520 278 15 50 chr4 36789867 36790409 -118839711 - Lx6 LINE L1 -556 6904 6382 4 865 431 154 0 0 chr4 36791440 36791518 -118838602 + Lx2 LINE L1 6920 6997 0 4 865 1094 90 0 0 chr4 36791526 36791670 -118838450 + B1_Mus2 SINE Alu 1 144 -3 4 865 636 81 0 0 chr4 36791670 36791757 -118838363 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 865 23 33 0 0 chr4 36792906 36792936 -118837184 + AT_rich Low_complexity Low_complexity 1 30 0 4 865 979 92 35 7 chr4 36794066 36794208 -118835912 - B1_Mm SINE Alu 0 147 2 4 865 8455 22 0 0 chr4 36794319 36795818 -118834302 - L1Md_T LINE L1 -2 6580 5082 4 865 278 346 99 0 chr4 36796269 36796370 -118833750 + PB1D10 SINE Alu 6 116 -1 4 865 434 282 48 21 chr4 36796611 36796647 -118833473 + ID SINE ID 41 80 -144 4 865 839 72 0 0 chr4 36796647 36796758 -118833362 + B1_Mus1 SINE Alu 2 112 -36 4 865 201 132 0 0 chr4 36797020 36797058 -118833062 + (A)n Simple_repeat Simple_repeat 1 38 0 4 865 558 0 0 0 chr4 36799497 36799559 -118830561 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 865 409 36 0 0 chr4 36799619 36799675 -118830445 + L1_Mus1 LINE L1 6511 6566 -1 4 865 222 176 0 0 chr4 36800287 36800338 -118829782 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 4 865 405 0 0 0 chr4 36800356 36800401 -118829719 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 865 249 33 0 0 chr4 36800401 36800430 -118829690 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 865 232 384 7 28 chr4 36800744 36800886 -118829234 + MER5A DNA MER1_type 27 165 -24 4 865 294 296 88 44 chr4 36801428 36801633 -118828487 - L1M3 LINE L1 -536 5653 5440 4 865 831 155 39 106 chr4 36801982 36802200 -118827920 + Lx2 LINE L1 5268 5449 -428 4 865 6421 102 20 1 chr4 36802201 36803126 -118826994 + Lx3_Mus LINE L1 6051 6993 -16 4 865 5672 139 43 1 chr4 36803551 36804959 -118825161 + Lx2 LINE L1 5450 6700 -297 4 865 1626 171 46 18 chr4 36804959 36805287 -118824833 + Lx2 LINE L1 6659 6995 -2 4 865 264 250 0 0 chr4 36805732 36805796 -118824324 + Lx7 LINE L1 7275 7338 -358 4 865 4784 200 25 36 chr4 36805796 36806576 -118823544 + RLTR25B LTR ERVK 1 772 -256 4 865 477 0 0 0 chr4 36806576 36806629 -118823491 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 4 865 1084 99 0 0 chr4 36806631 36806773 -118823347 - B1_Mus1 SINE Alu -6 142 1 4 865 4784 200 25 36 chr4 36806773 36806830 -118823290 + RLTR25B LTR ERVK 773 820 -208 4 865 477 0 0 0 chr4 36806830 36806883 -118823237 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 865 293 0 27 0 chr4 36806883 36806919 -118823201 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 865 4784 200 25 36 chr4 36806919 36807116 -118823004 + RLTR25B LTR ERVK 821 1027 -1 4 865 272 246 172 166 chr4 36807456 36807607 -118822513 + RSINE1 SINE B4 14 165 0 4 865 648 86 0 0 chr4 36807621 36807726 -118822394 + (TC)n Simple_repeat Simple_repeat 1 105 0 4 865 333 0 0 0 chr4 36807726 36807762 -118822358 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 865 278 318 141 37 chr4 36808060 36808093 -118822027 + B3 SINE B2 37 67 -149 4 865 207 0 0 0 chr4 36808101 36808124 -118821996 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 865 1008 90 0 58 chr4 36808124 36808269 -118821851 - B1_Mm SINE Alu -9 138 2 4 865 278 318 141 37 chr4 36808269 36808398 -118821722 + B3 SINE B2 68 215 -1 4 865 27 0 0 0 chr4 36808441 36808468 -118821652 + AT_rich Low_complexity Low_complexity 1 27 0 4 865 7964 46 15 2 chr4 36808634 36809956 -118820164 - L1Md_F2 LINE L1 -1 6581 5243 4 865 8065 38 21 0 chr4 36809994 36810988 -118819132 - L1Md_T LINE L1 0 6582 5244 4 865 508 62 25 0 chr4 36810988 36811069 -118819051 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 865 3096 64 560 0 chr4 36811069 36811400 -118818720 - L1Md_T LINE L1 -640 5243 4905 4 865 8820 72 13 0 chr4 36811398 36812570 -118817550 + L1Md_T LINE L1 3703 4889 -994 4 865 28 29 0 0 chr4 36812882 36812917 -118817203 + AT_rich Low_complexity Low_complexity 1 35 0 4 865 350 312 69 38 chr4 36813617 36813777 -118816343 - MER5A1 DNA MER1_type 0 166 2 4 865 296 296 0 0 chr4 36814623 36814694 -118815426 - RMER15-int LTR ERVL -433 4566 4496 4 865 258 32 0 0 chr4 36814833 36814864 -118815256 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 865 481 330 55 38 chr4 36814881 36815117 -118815003 - RMER15 LTR ERVL -40 535 296 4 865 557 321 58 13 chr4 36815253 36815565 -118814555 - L1MB2 LINE L1 -59 6112 5787 4 865 21 0 0 0 chr4 36816036 36816057 -118814063 + AT_rich Low_complexity Low_complexity 1 21 0 4 865 3854 233 112 18 chr4 36816343 36817373 -118812747 + Lx5 LINE L1 5916 7042 -8 4 865 526 290 0 28 chr4 36817548 36817690 -118812430 - B1_Mur1 SINE Alu -9 140 3 4 865 1785 183 55 8 chr4 36817716 36818079 -118812041 + Lx3C LINE L1 6595 6974 -2 4 865 180 0 0 0 chr4 36818096 36818116 -118812004 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4 865 1142 69 7 0 chr4 36818180 36818325 -118811795 + B1_Mus2 SINE Alu 2 147 0 4 865 197 33 33 0 chr4 36818325 36818355 -118811765 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 4 865 314 325 84 36 chr4 36819684 36819850 -118810270 + MLT1F2 LTR MaLR 31 204 -356 4 865 3445 132 27 6 chr4 36820150 36820699 -118809421 - Lx4A LINE L1 -214 6844 6284 4 865 281 295 59 95 chr4 36821083 36821304 -118808816 + L1M3 LINE L1 3683 3895 -2245 4 865 756 33 0 0 chr4 36821426 36821517 -118808603 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 865 411 263 0 0 chr4 36821814 36821909 -118808211 + RLTR23 LTR ERV1 6 100 -330 4 865 829 273 48 70 chr4 36821947 36822278 -118807842 + RLTR23 LTR ERV1 107 430 0 4 865 323 347 28 28 chr4 36823010 36823188 -118806932 + Lx9 LINE L1 7178 7355 -289 4 865 708 80 0 0 chr4 36823326 36823426 -118806694 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 865 300 28 0 0 chr4 36823426 36823462 -118806658 - HAL1-3A_ME LINE L1 -849 2009 1974 4 865 215 205 0 0 chr4 36823874 36823913 -118806207 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 865 22 70 0 0 chr4 36824346 36824389 -118805731 + AT_rich Low_complexity Low_complexity 1 43 0 4 865 1147 63 0 0 chr4 36824590 36824732 -118805388 + B1_Mus1 SINE Alu 1 142 -6 4 865 240 59 0 0 chr4 36824764 36824798 -118805322 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 4 865 22 0 0 0 chr4 36825510 36825532 -118804588 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 312 214 62 9 chr4 36825986 36826099 -118804021 - Lx9 LINE L1 -3 7641 7523 4 865 286 238 12 24 chr4 36826754 36826836 -118803284 - MTD LTR MaLR -327 92 12 4 865 201 158 0 0 chr4 36826836 36826874 -118803246 + A-rich Low_complexity Low_complexity 2 39 0 4 865 180 0 0 0 chr4 36827130 36827150 -118802970 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 865 447 343 37 25 chr4 36827484 36827726 -118802394 - MER2 DNA MER2_type -1 344 100 4 865 3992 52 2 4 chr4 36827827 36828324 -118801796 - L1Md_F2 LINE L1 0 6582 6087 4 865 240 184 0 39 chr4 36828489 36828540 -118801580 + MTD LTR MaLR 371 419 0 5 865 1462 63 11 5 chr4 36828591 36828782 -118801338 - B2_Mm2 SINE B2 -3 192 1 5 865 755 260 55 10 chr4 36828923 36829125 -118800995 + B3 SINE B2 1 211 -5 5 865 21 57 0 0 chr4 36829128 36829163 -118800957 + AT_rich Low_complexity Low_complexity 1 35 0 5 865 182 129 32 0 chr4 36829904 36829935 -118800185 - L3 LINE CR1 -2440 2049 2018 5 865 360 283 105 87 chr4 36830199 36830489 -118799631 + MTEb LTR MaLR 72 379 0 5 108 2466 176 112 60 chr4 36830994 36831647 -118798473 - RMER6C LTR ERVK -2 688 2 5 866 382 168 0 2 chr4 36831647 36831743 -118798377 - MTB_Mm LTR MaLR 0 407 302 5 866 8413 30 0 0 chr4 36831792 36832951 -118797169 - L1Md_T LINE L1 0 6582 5424 5 866 2163 94 62 0 chr4 36832951 36833258 -118796862 - MTB_Mm LTR MaLR -54 353 28 5 866 9918 107 26 8 chr4 36833258 36835235 -118794885 - Lx3_Mus LINE L1 -596 6413 4396 5 866 29 28 0 0 chr4 36835792 36835828 -118794292 + AT_rich Low_complexity Low_complexity 1 36 0 5 866 210 37 0 0 chr4 36837143 36837170 -118792950 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 866 317 319 70 49 chr4 36838002 36838144 -118791976 - MER5A DNA MER1_type -43 146 2 5 866 877 39 0 0 chr4 36838544 36838646 -118791474 + L1Md_F2 LINE L1 5485 5586 -297 5 866 8070 45 2 2 chr4 36838646 36839630 -118790490 + L1Md_F2 LINE L1 5587 6570 -12 5 866 22 56 0 0 chr4 36839775 36839811 -118790309 + AT_rich Low_complexity Low_complexity 1 36 0 5 866 547 313 40 30 chr4 36839845 36840046 -118790074 + B3 SINE B2 14 216 0 5 866 1519 239 42 157 chr4 36840408 36840836 -118789284 + RMER19C LTR ERVK 1 350 -261 5 866 432 0 0 0 chr4 36840836 36840884 -118789236 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 866 1519 239 42 157 chr4 36840884 36841145 -118788975 + RMER19C LTR ERVK 351 611 0 5 866 25 95 0 0 chr4 36841273 36841347 -118788773 + AT_rich Low_complexity Low_complexity 1 74 0 5 866 415 209 11 11 chr4 36841372 36841464 -118788656 + L1_Mur3 LINE L1 4668 4759 -1121 5 866 277 223 11 11 chr4 36841517 36841612 -118788508 + (TA)n Simple_repeat Simple_repeat 1 95 0 5 866 1021 227 41 62 chr4 36841623 36841961 -118788159 + Lx7 LINE L1 7359 7689 -7 5 866 505 222 31 16 chr4 36841962 36842112 -118788008 - RMER1C Other Other -1 1341 1222 5 866 28 29 0 0 chr4 36842798 36842833 -118787287 + AT_rich Low_complexity Low_complexity 1 35 0 5 866 2018 102 9 19 chr4 36842876 36843194 -118786926 + L1Md_F2 LINE L1 6267 6581 -1 5 866 306 269 13 13 chr4 36843514 36843593 -118786527 + ID_B1 SINE B4 133 211 -13 5 866 2484 249 46 69 chr4 36843594 36844336 -118785784 + RMER1C Other Other 615 1339 -3 5 866 2891 49 0 0 chr4 36844883 36845229 -118784891 + ORR1A1 LTR MaLR 1 346 0 5 866 36 77 0 0 chr4 36845557 36845635 -118784485 + AT_rich Low_complexity Low_complexity 1 78 0 5 866 234 0 0 0 chr4 36845650 36845676 -118784444 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 866 586 150 12 42 chr4 36845676 36845843 -118784277 + Lx9 LINE L1 7481 7642 -2 5 866 330 251 89 10 chr4 36846259 36846370 -118783750 - MLT1A1 LTR MaLR -237 128 3 5 866 6799 89 42 6 chr4 36846434 36847417 -118782703 - L1_Mus3 LINE L1 -1 6637 5620 5 866 22 35 0 0 chr4 36847558 36847587 -118782533 + AT_rich Low_complexity Low_complexity 1 29 0 5 866 369 0 0 0 chr4 36848619 36848660 -118781460 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 866 26 30 0 0 chr4 36849151 36849184 -118780936 + AT_rich Low_complexity Low_complexity 1 33 0 5 866 1443 101 0 5 chr4 36849348 36849568 -118780552 + L1_Mus4 LINE L1 6416 6634 -2 5 866 22 35 0 0 chr4 36850769 36850798 -118779322 + AT_rich Low_complexity Low_complexity 1 29 0 5 866 199 317 87 29 chr4 36851051 36851155 -118778965 - L4 LINE RTE -1277 752 643 5 866 470 330 21 22 chr4 36851295 36851496 -118778624 + B3A SINE B2 10 216 0 5 866 7316 87 60 4 chr4 36851769 36853339 -118776781 + L1_Mus1 LINE L1 4917 6567 0 5 866 4645 244 42 13 chr4 36853341 36854467 -118775653 + Lx7 LINE L1 5795 6952 -744 5 866 979 269 4 17 chr4 36854479 36854710 -118775410 + RMER1B Other Other 507 734 -332 5 866 704 142 8 0 chr4 36854707 36854827 -118775293 - Lx5 LINE L1 -1303 5747 5627 5 866 418 266 180 71 chr4 36854817 36855056 -118775064 + Lx5 LINE L1 6768 7032 -18 5 866 195 42 0 0 chr4 36855058 36855082 -118775038 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 5 866 1349 252 52 76 chr4 36855086 36855585 -118774535 + Lx7 LINE L1 7206 7692 -4 5 866 246 345 66 11 chr4 36855717 36855808 -118774312 + B4A SINE B4 190 285 -7 5 866 522 31 0 0 chr4 36857056 36857120 -118773000 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 866 25 31 0 0 chr4 36857422 36857454 -118772666 + AT_rich Low_complexity Low_complexity 1 32 0 5 866 23 0 0 0 chr4 36858256 36858279 -118771841 + AT_rich Low_complexity Low_complexity 1 23 0 5 866 309 104 0 0 chr4 36858704 36858739 -118771381 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 866 366 23 0 0 chr4 36858739 36858782 -118771338 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 866 309 104 0 0 chr4 36858782 36858794 -118771326 + (TA)n Simple_repeat Simple_repeat 1 12 0 5 866 2729 171 96 63 chr4 36860070 36860738 -118769382 + RMER6C LTR ERVK 1 690 0 5 866 483 100 0 0 chr4 36861000 36861070 -118769050 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 866 760 292 69 15 chr4 36861156 36861558 -118768562 - Lx5 LINE L1 -784 6676 5943 5 866 550 125 0 0 chr4 36861765 36861845 -118768275 + B1_Mus2 SINE Alu 1 80 -67 5 866 293 273 0 74 chr4 36861845 36861858 -118768262 + MT2B2 LTR ERVL 165 250 -334 5 866 219 36 0 0 chr4 36861985 36862013 -118768107 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 866 1030 53 0 0 chr4 36862013 36862144 -118767976 - B1_Mm SINE Alu -3 144 14 5 866 292 200 0 24 chr4 36863446 36863528 -118766592 + GA-rich Low_complexity Low_complexity 1 80 0 5 866 2207 56 0 7 chr4 36864560 36864847 -118765273 - L1Md_F2 LINE L1 0 6582 6298 5 866 428 313 152 15 chr4 36865623 36865821 -118764299 - MLT1H LTR MaLR -323 226 2 5 866 1303 226 67 62 chr4 36866819 36867009 -118763111 + RMER17C LTR ERVK 3 189 -221 5 866 917 41 20 26 chr4 36867009 36867160 -118762960 + (TCTCC)n Simple_repeat Simple_repeat 2 151 0 5 866 1303 226 67 62 chr4 36867160 36867375 -118762745 + RMER17C LTR ERVK 190 409 -1 5 866 2493 294 78 112 chr4 36867552 36867841 -118762279 + L1_Mur3 LINE L1 3562 3868 -2012 5 866 396 0 0 0 chr4 36867841 36867885 -118762235 + (CAT)n Simple_repeat Simple_repeat 3 46 0 5 866 2493 294 78 112 chr4 36867885 36869429 -118760691 + L1_Mur3 LINE L1 3869 5292 -588 5 866 1219 91 40 6 chr4 36869429 36869605 -118760515 + B2_Mm2 SINE B2 1 182 -13 5 866 2493 294 78 112 chr4 36869605 36869995 -118760125 + L1_Mur3 LINE L1 5293 5709 -171 5 866 180 380 59 20 chr4 36870605 36870707 -118759413 - MIRc SINE MIR -154 114 9 5 866 200 195 0 0 chr4 36870920 36870961 -118759159 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 5 866 25 51 0 0 chr4 36871050 36871089 -118759031 + AT_rich Low_complexity Low_complexity 1 39 0 5 866 215 61 0 29 chr4 36871206 36871240 -118758880 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 866 253 333 34 34 chr4 36871251 36871397 -118758723 - Lx9 LINE L1 -248 7396 7251 5 866 36 17 0 48 chr4 36871526 36871588 -118758532 + AT_rich Low_complexity Low_complexity 1 59 0 5 866 1457 306 82 43 chr4 36871904 36872607 -118757513 + Lx9 LINE L1 6435 7165 -479 5 866 4814 146 21 0 chr4 36872689 36873498 -118756622 - Lx4A LINE L1 -78 5799 4974 5 866 1847 149 25 6 chr4 36873495 36873820 -118756300 + Lx4A LINE L1 5799 6129 -929 5 866 5284 67 3 3 chr4 36873814 36874503 -118755617 + L1Md_F2 LINE L1 5708 6396 -186 5 866 612 210 30 161 chr4 36874557 36874713 -118755407 - RLTR20B3 LTR ERVK -399 178 39 5 866 4751 76 0 6 chr4 36874713 36875338 -118754782 - L1_Mus1 LINE L1 -1 6566 5946 5 866 612 210 30 161 chr4 36875338 36875380 -118754740 - RLTR20B3 LTR ERVK -539 38 6 5 866 23 54 0 0 chr4 36875722 36875759 -118754361 + AT_rich Low_complexity Low_complexity 1 37 0 5 866 22 56 0 0 chr4 36875888 36875924 -118754196 + AT_rich Low_complexity Low_complexity 1 36 0 5 866 22 35 0 0 chr4 36876155 36876184 -118753936 + AT_rich Low_complexity Low_complexity 1 29 0 5 866 279 0 0 0 chr4 36876795 36876826 -118753294 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 866 387 60 0 0 chr4 36876826 36876875 -118753245 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 866 2101 109 3 15 chr4 36876892 36877218 -118752902 - L1_Mus4 LINE L1 -3 6633 6312 5 866 275 260 177 54 chr4 36877384 36877514 -118752606 - ID_B1 SINE B4 -2 222 77 5 866 22 0 0 0 chr4 36878198 36878220 -118751900 + AT_rich Low_complexity Low_complexity 1 22 0 5 866 212 238 29 100 chr4 36878454 36878524 -118751596 - ID4 SINE ID -2 81 17 5 866 271 308 101 18 chr4 36878557 36878666 -118751454 - PB1 SINE Alu -7 120 3 5 866 376 379 0 32 chr4 36879459 36879617 -118750503 + RMER15 LTR ERVL 267 419 -156 5 866 261 0 0 0 chr4 36879827 36879856 -118750264 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 866 297 0 0 0 chr4 36879856 36879888 -118750232 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 866 2194 103 63 6 chr4 36880221 36880571 -118749549 - Lx LINE L1 0 6654 6285 5 866 287 339 128 34 chr4 36881005 36881240 -118748880 - MER2 DNA MER2_type -65 280 24 5 866 21 0 0 0 chr4 36881492 36881513 -118748607 + AT_rich Low_complexity Low_complexity 1 21 0 5 866 587 343 32 76 chr4 36881804 36882173 -118747947 + ORR1E LTR MaLR 3 355 -4 5 866 695 299 49 49 chr4 36882225 36882633 -118747487 - L1MD2 LINE L1 -373 5986 5579 5 866 644 279 76 10 chr4 36882723 36883013 -118747107 - L1MD2 LINE L1 -650 5592 5284 5 866 360 64 0 0 chr4 36883107 36883154 -118746966 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 5 866 296 137 0 73 chr4 36883154 36883209 -118746911 - B1_Mur2 SINE Alu 0 149 99 5 866 25 0 0 0 chr4 36883479 36883504 -118746616 + AT_rich Low_complexity Low_complexity 1 25 0 5 866 992 55 55 0 chr4 36884126 36884254 -118745866 - L1_Mus2 LINE L1 -322 6244 6110 6 866 1269 85 52 16 chr4 36884254 36884445 -118745675 + L1_Mus2 LINE L1 6368 6565 -1 6 866 2115 228 57 64 chr4 36886178 36886788 -118743332 + Lx2B LINE L1 6382 6987 -13 6 866 534 79 0 33 chr4 36887782 36887874 -118742246 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 866 979 297 18 12 chr4 36890413 36890750 -118739370 + Lx8 LINE L1 5500 5838 -42 6 866 665 308 147 19 chr4 36890813 36891276 -118738844 + Lx8 LINE L1 5960 6478 -995 6 866 3200 178 130 76 chr4 36891277 36892121 -118737999 + RMER19B LTR ERVK 1 890 -12 6 866 1434 332 97 34 chr4 36892136 36893075 -118737045 + Lx8 LINE L1 6475 7472 -1 6 866 23 0 0 0 chr4 36893139 36893162 -118736958 + AT_rich Low_complexity Low_complexity 1 23 0 6 866 291 54 0 0 chr4 36893331 36893368 -118736752 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 866 360 0 0 0 chr4 36894362 36894402 -118735718 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 866 228 253 0 37 chr4 36898755 36898837 -118731283 + (CACG)n Simple_repeat Simple_repeat 3 81 0 6 866 21 0 0 0 chr4 36902021 36902042 -118728078 + AT_rich Low_complexity Low_complexity 1 21 0 6 866 630 24 0 0 chr4 36902159 36902241 -118727879 + L1Md_T LINE L1 6500 6581 -1 6 866 250 302 2 111 chr4 36902517 36902638 -118727482 + B3A SINE B2 100 215 -1 6 866 490 344 107 25 chr4 36903417 36903736 -118726384 - MLT1A LTR MaLR -11 363 19 6 866 277 337 29 29 chr4 36903796 36903900 -118726220 + LTR80A LTR ERVL 125 228 -355 6 866 313 360 36 14 chr4 36904269 36904407 -118725713 - MIR SINE MIR -111 151 11 6 866 4510 162 44 30 chr4 36904808 36905097 -118725023 - Lx4B LINE L1 -921 6137 5836 6 866 1634 26 5 0 chr4 36905097 36905287 -118724833 - B2_Mm1t SINE B2 -1 192 2 6 866 4510 151 27 31 chr4 36905287 36906107 -118724013 - Lx4B LINE L1 -42 5835 5005 6 866 2672 221 60 14 chr4 36906110 36906867 -118723253 + Lx4B LINE L1 6174 6980 -20 6 866 357 62 0 0 chr4 36908261 36908309 -118721811 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 866 333 117 0 0 chr4 36908309 36908369 -118721751 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 866 728 290 74 65 chr4 36908428 36908767 -118721353 + MLT1B LTR MaLR 47 388 -2 6 866 2164 108 99 0 chr4 36909119 36909462 -118720658 - MTB LTR MaLR -23 377 1 6 866 241 239 105 32 chr4 36909462 36909557 -118720563 + Lx8 LINE L1 7240 7341 -132 6 866 231 247 23 69 chr4 36910805 36910892 -118719228 + Charlie2b DNA MER1_type 2030 2112 -670 6 866 22 56 0 0 chr4 36911510 36911546 -118718574 + AT_rich Low_complexity Low_complexity 1 36 0 6 866 253 310 71 12 chr4 36911615 36911700 -118718420 + RSINE1 SINE B4 47 136 -29 6 866 195 42 0 0 chr4 36911705 36911729 -118718391 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 866 26 0 0 0 chr4 36911804 36911830 -118718290 + AT_rich Low_complexity Low_complexity 1 26 0 6 866 28 29 0 0 chr4 36911882 36911917 -118718203 + AT_rich Low_complexity Low_complexity 1 35 0 6 866 22 0 0 0 chr4 36913601 36913623 -118716497 + AT_rich Low_complexity Low_complexity 1 22 0 6 866 184 77 0 0 chr4 36913779 36913805 -118716315 + MIRm SINE MIR 238 263 -13 6 866 33 56 0 0 chr4 36913859 36913913 -118716207 + AT_rich Low_complexity Low_complexity 1 54 0 6 866 1181 255 172 32 chr4 36914330 36914824 -118715296 - RMER2 LTR ERV1 -4 563 1 6 866 225 191 22 67 chr4 36916180 36916270 -118713850 + L2a LINE L2 3263 3348 -78 6 866 2837 164 64 50 chr4 36917834 36918631 -118711489 + RLTR13C1 LTR ERVK 1 1114 0 6 866 234 0 0 0 chr4 36919967 36919993 -118710127 + (A)n Simple_repeat Simple_repeat 1 26 0 6 866 2966 58 0 5 chr4 36920042 36920421 -118709699 - L1_Mus1 LINE L1 0 6567 6191 6 866 1778 168 39 8 chr4 36920417 36920778 -118709342 + Lx2 LINE L1 6620 6991 -6 6 866 257 282 55 31 chr4 36921337 36921465 -118708655 + MLT1B LTR MaLR 9 139 -251 6 866 295 408 17 13 chr4 36921530 36921761 -118708359 + Lx8 LINE L1 7086 7317 -156 6 866 624 132 0 0 chr4 36921897 36922003 -118708117 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 866 229 270 16 16 chr4 36922021 36922085 -118708035 + MLT1B LTR MaLR 248 311 -63 6 866 316 283 46 28 chr4 36922098 36922207 -118707913 + B1_Mus1 SINE Alu 36 146 -2 6 866 513 104 0 0 chr4 36922231 36922308 -118707812 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 6 866 39 22 0 0 chr4 36922760 36922806 -118707314 + AT_rich Low_complexity Low_complexity 1 46 0 6 866 21 36 0 0 chr4 36923418 36923446 -118706674 + AT_rich Low_complexity Low_complexity 1 28 0 6 866 2246 220 38 58 chr4 36923772 36924355 -118705765 - RMER15 LTR ERVL -2 573 3 6 866 453 287 64 54 chr4 36924584 36924799 -118705321 - B3A SINE B2 -6 210 5 6 866 655 271 25 15 chr4 36924902 36925104 -118705016 + Lx9 LINE L1 7067 7270 -374 6 866 288 200 0 0 chr4 36925260 36925325 -118704795 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 866 23 33 0 0 chr4 36925471 36925501 -118704619 + AT_rich Low_complexity Low_complexity 1 30 0 6 866 22 35 0 0 chr4 36925799 36925828 -118704292 + AT_rich Low_complexity Low_complexity 1 29 0 6 866 6182 176 60 10 chr4 36926712 36926928 -118703192 + Lx3C LINE L1 5692 5907 -1069 6 866 210 37 0 0 chr4 36926928 36926955 -118703165 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 866 6182 176 60 10 chr4 36926955 36927960 -118702160 + Lx3C LINE L1 5908 6973 -3 6 866 39 0 0 0 chr4 36927960 36927999 -118702121 + AT_rich Low_complexity Low_complexity 1 39 0 6 866 299 85 21 0 chr4 36928658 36928705 -118701415 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 866 2653 107 26 0 chr4 36928868 36929253 -118700867 + MTB LTR MaLR 1 395 -5 6 866 6891 124 6 10 chr4 36929255 36930524 -118699596 + L1_Mus3 LINE L1 5371 6637 -1 6 866 1794 212 119 23 chr4 36930764 36931291 -118698829 + Lx7 LINE L1 5651 6228 -1468 6 866 2187 223 130 26 chr4 36931303 36932082 -118698038 + Lx7 LINE L1 6833 7692 -4 6 866 334 259 63 87 chr4 36932217 36932323 -118697797 - ID_B1 SINE B4 -21 203 94 6 866 1857 188 53 11 chr4 36932323 36932699 -118697421 + ORR1B1 LTR MaLR 1 392 -2 6 866 334 259 63 87 chr4 36932699 36932719 -118697401 - ID_B1 SINE B4 -131 93 80 6 866 262 278 17 77 chr4 36933051 36933168 -118696952 - B1F1 SINE Alu 0 149 40 6 866 267 279 110 39 chr4 36933734 36933861 -118696259 + Lx8 LINE L1 6190 6325 -1148 6 866 228 388 31 0 chr4 36933908 36934006 -118696114 + MER5A DNA MER1_type 89 189 0 6 866 957 33 0 0 chr4 36935201 36935322 -118694798 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 866 998 96 0 0 chr4 36935570 36935705 -118694415 + B1_Mus1 SINE Alu 2 136 -12 6 866 738 0 0 0 chr4 36935705 36935787 -118694333 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 866 378 61 0 0 chr4 36936082 36936131 -118693989 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 866 907 301 58 35 chr4 36936659 36937007 -118693113 + ORR1E LTR MaLR 4 359 0 6 866 326 279 188 0 chr4 36937873 36938038 -118692082 + ERVL-E-int LTR ERVL 4316 4511 -1156 6 866 1853 75 0 0 chr4 36939387 36939627 -118690493 + L1_Mus1 LINE L1 6328 6567 0 6 866 477 0 0 0 chr4 36940267 36940320 -118689800 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 866 294 29 0 0 chr4 36941906 36941941 -118688179 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 866 609 246 20 40 chr4 36942281 36942480 -118687640 + RMER1A Other Other 818 1012 -18 6 866 21 0 0 0 chr4 36942678 36942699 -118687421 + AT_rich Low_complexity Low_complexity 1 21 0 6 866 299 254 8 0 chr4 36942753 36942875 -118687245 + (TG)n Simple_repeat Simple_repeat 2 124 0 6 866 468 325 46 11 chr4 36942876 36943050 -118687070 - B3A SINE B2 -18 180 1 6 866 502 190 8 8 chr4 36943059 36943176 -118686944 + CT-rich Low_complexity Low_complexity 3 119 0 6 866 681 260 100 56 chr4 36944020 36944269 -118685851 - Lx9 LINE L1 -447 7197 6938 6 866 491 297 29 86 chr4 36944805 36945015 -118685105 - B3A SINE B2 0 198 1 6 866 243 0 0 0 chr4 36946016 36946043 -118684077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 866 204 150 0 24 chr4 36946043 36946084 -118684036 + T-rich Low_complexity Low_complexity 5 44 0 6 866 327 301 36 36 chr4 36946456 36946594 -118683526 - ID_B1 SINE B4 -4 220 83 6 866 295 204 19 0 chr4 36946889 36946943 -118683177 - RMER15-int LTR ERVL -4376 623 569 6 866 252 86 0 0 chr4 36947559 36947594 -118682526 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 866 1901 258 30 76 chr4 36947957 36948482 -118681638 - RLTR18B LTR ERVK -5 507 7 6 866 578 306 31 65 chr4 36948596 36948980 -118681140 - L1_Mur2 LINE L1 -393 5487 5117 6 866 1019 94 0 36 chr4 36949002 36949167 -118680953 - L1Md_F3 LINE L1 -12 6572 6414 6 866 36770 62 4 8 chr4 36949167 36954943 -118675177 - L1Md_F3 LINE L1 -384 6200 235 6 866 429 254 25 70 chr4 36954947 36955104 -118675016 - L1_Mur2 LINE L1 -745 5135 4986 6 866 3428 154 21 21 chr4 36956141 36956799 -118673321 - L1_Mur2 LINE L1 -1665 4212 3555 6 866 8779 144 18 3 chr4 36956816 36958308 -118671812 + Lx2 LINE L1 5480 6994 -3 6 866 491 294 116 16 chr4 36958338 36958528 -118671592 - B3 SINE B2 -7 209 1 6 866 6813 245 55 57 chr4 36958553 36958901 -118671219 - Lx7 LINE L1 0 7696 7351 6 866 1161 54 7 0 chr4 36958901 36959048 -118671072 + B1_Mus1 SINE Alu 1 148 0 6 866 6813 241 61 43 chr4 36959048 36961397 -118668723 - Lx7 LINE L1 -346 7350 4971 6 866 230 270 30 110 chr4 36961618 36961718 -118668402 - MIRm SINE MIR -20 256 165 6 867 26 30 0 0 chr4 36962952 36962985 -118667135 + AT_rich Low_complexity Low_complexity 1 33 0 6 867 5102 121 21 18 chr4 36963460 36964278 -118665842 - Lx LINE L1 -7 6647 5828 6 867 25449 146 29 27 chr4 36964280 36968522 -118661598 - Lx3C LINE L1 -13 6963 2694 6 867 1007 101 0 0 chr4 36968522 36968660 -118661460 - B1_Mm SINE Alu -9 138 1 6 867 25449 138 30 29 chr4 36968660 36969345 -118660775 - Lx3C LINE L1 -3193 2693 1987 6 867 5647 44 0 0 chr4 36969345 36970028 -118660092 - L1Md_T LINE L1 -1 6581 5899 6 867 25449 146 41 22 chr4 36970028 36971261 -118658859 - Lx3C LINE L1 -3900 1986 788 6 867 486 0 0 0 chr4 36971261 36971315 -118658805 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 6 867 3197 161 63 7 chr4 36971315 36971406 -118658714 - Lx3C LINE L1 -6197 787 692 6 867 452 210 23 29 chr4 36971421 36971561 -118658559 - L1_Mur1 LINE L1 -6121 861 636 6 867 301 269 0 0 chr4 36971642 36971720 -118658400 - L1_Mur1 LINE L1 -6233 749 672 6 867 27 0 0 0 chr4 36971747 36971774 -118658346 + AT_rich Low_complexity Low_complexity 1 27 0 7 867 26 30 0 0 chr4 36971810 36971843 -118658277 + AT_rich Low_complexity Low_complexity 1 33 0 7 867 2652 84 0 0 chr4 36972417 36972763 -118657357 + ORR1A1 LTR MaLR 1 346 0 7 867 189 0 0 0 chr4 36973520 36973541 -118656579 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 867 458 281 76 35 chr4 36973542 36974051 -118656069 - L1_Rod LINE L1 -707 5593 5002 7 867 632 298 24 5 chr4 36974182 36974388 -118655732 + B3 SINE B2 1 210 -6 7 867 223 96 13 64 chr4 36974482 36974560 -118655560 + T-rich Low_complexity Low_complexity 3 76 0 7 867 1054 116 0 0 chr4 36974602 36974749 -118655371 + B1_Mus1 SINE Alu 2 148 0 7 867 768 68 0 0 chr4 36974759 36974862 -118655258 + (GA)n Simple_repeat Simple_repeat 2 104 0 7 867 1048 301 148 15 chr4 36974884 36975430 -118654690 + MER44D DNA MER2_type 84 702 -3 7 867 208 332 80 102 chr4 36975711 36975936 -118654184 + MIR SINE MIR 25 244 -18 7 867 24 0 0 0 chr4 36975977 36976001 -118654119 + AT_rich Low_complexity Low_complexity 1 24 0 7 867 422 298 148 7 chr4 36976475 36976617 -118653503 + B3A SINE B2 2 163 -35 7 867 275 294 188 32 chr4 36976670 36976856 -118653264 + B3 SINE B2 1 215 -1 7 867 27 29 0 0 chr4 36976856 36976890 -118653230 + AT_rich Low_complexity Low_complexity 1 34 0 7 867 23 33 0 0 chr4 36977135 36977165 -118652955 + AT_rich Low_complexity Low_complexity 1 30 0 7 867 396 0 0 0 chr4 36977266 36977310 -118652810 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 867 5593 71 10 20 chr4 36978342 36979122 -118650998 + L1_Mus3 LINE L1 5864 6635 -3 7 867 240 234 0 0 chr4 36979790 36979837 -118650283 - LTR41B LTR ERVL -711 47 1 7 867 297 317 89 0 chr4 36980315 36980416 -118649704 - MLT2B1 LTR ERVL -122 445 336 7 867 272 299 24 79 chr4 36980602 36980729 -118649391 + PB1D7 SINE Alu 1 120 0 7 867 1400 6 12 6 chr4 36980798 36980971 -118649149 - L1Md_F3 LINE L1 -1 6583 6410 7 867 214 322 146 13 chr4 36981125 36981276 -118648844 - MIR3 SINE MIR -31 177 7 7 867 234 91 0 0 chr4 36981845 36981878 -118648242 + (A)n Simple_repeat Simple_repeat 1 33 0 7 867 270 0 0 0 chr4 36982324 36982354 -118647766 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 867 351 294 66 16 chr4 36982836 36982957 -118647163 - B1F SINE Alu -1 148 22 7 867 990 262 62 35 chr4 36983877 36984281 -118645839 - L1M5 LINE L1 -765 5381 4967 7 867 197 86 0 54 chr4 36984428 36984465 -118645655 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 7 867 936 267 142 35 chr4 36984808 36985153 -118644967 - Lx2B LINE L1 -10 6990 6609 7 867 1976 230 43 25 chr4 36985151 36985757 -118644363 + Lx4B LINE L1 6296 6998 -60 7 867 324 0 0 0 chr4 36985758 36985794 -118644326 + (CAT)n Simple_repeat Simple_repeat 3 38 0 7 867 265 331 174 7 chr4 36986091 36986246 -118643874 - MER20 DNA MER1_type -37 182 2 7 867 220 165 34 34 chr4 36986542 36986630 -118643490 + CT-rich Low_complexity Low_complexity 2 89 0 7 867 210 37 0 0 chr4 36987152 36987179 -118642941 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 867 240 226 0 19 chr4 36987511 36987565 -118642555 + (CATA)n Simple_repeat Simple_repeat 4 56 0 7 867 362 335 95 15 chr4 36987565 36987965 -118642155 - L1MA9 LINE L1 -219 6093 5662 7 867 400 148 287 0 chr4 36988239 36988347 -118641773 + Lx9 LINE L1 7499 7637 -7 7 867 505 256 63 58 chr4 36989679 36989710 -118640410 - B2_Mm2 SINE B2 -3 192 170 7 867 390 74 0 0 chr4 36989710 36989764 -118640356 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 867 573 256 63 58 chr4 36989764 36989923 -118640197 - B3A SINE B2 -26 169 1 7 867 1952 62 14 49 chr4 36990300 36990588 -118639532 + L1Md_F2 LINE L1 6305 6582 0 7 867 351 150 0 0 chr4 36993813 36993873 -118636247 + (GGA)n Simple_repeat Simple_repeat 2 61 0 7 867 2785 206 76 10 chr4 36994234 36994836 -118635284 - RLTR26 LTR ERVK 0 642 1 7 867 198 0 0 0 chr4 36995203 36995225 -118634895 + (T)n Simple_repeat Simple_repeat 1 22 0 7 867 1353 100 127 5 chr4 36995746 36995967 -118634153 - L1_Mm LINE L1 -361 5522 5275 7 867 1115 143 13 36 chr4 36995975 36996200 -118633920 + L1_Mus3 LINE L1 6402 6621 -17 7 867 3399 61 0 0 chr4 36996201 36996626 -118633494 + L1_Mus1 LINE L1 6143 6567 0 7 867 1241 24 36 6 chr4 36996664 36996830 -118633290 + L1Md_F3 LINE L1 6400 6570 -14 7 867 26 0 0 0 chr4 36996836 36996862 -118633258 + AT_rich Low_complexity Low_complexity 1 26 0 7 867 208 175 0 60 chr4 36996990 36997057 -118633063 + T-rich Low_complexity Low_complexity 3 65 0 7 867 186 43 0 0 chr4 36997477 36997500 -118632620 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 867 758 270 20 10 chr4 36997568 36997766 -118632354 - MTD LTR MaLR -219 200 1 7 867 244 342 0 0 chr4 36997921 36998000 -118632120 + GA-rich Low_complexity Low_complexity 3 81 0 7 867 345 140 0 0 chr4 36998344 36998401 -118631719 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 867 225 0 0 0 chr4 36998402 36998427 -118631693 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 867 26 64 0 0 chr4 36998456 36998503 -118631617 + AT_rich Low_complexity Low_complexity 1 47 0 7 867 294 176 59 0 chr4 36998950 36999001 -118631119 - MLT2B1 LTR ERVL -66 501 448 7 867 762 232 49 52 chr4 36999003 36999308 -118630812 + L1M3 LINE L1 4987 5290 -850 7 867 198 0 0 0 chr4 36999362 36999384 -118630736 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 867 249 266 156 0 chr4 36999397 36999506 -118630614 + L1M3 LINE L1 5601 5726 -463 7 867 555 300 178 21 chr4 37000222 37000890 -118629230 - Lx8 LINE L1 -80 7393 6621 1 867 6342 96 0 13 chr4 37000998 37001897 -118628223 - L1Md_F2 LINE L1 -12 6570 5684 2 867 7815 81 5 0 chr4 37001895 37002951 -118627169 + L1_Mm LINE L1 4011 5071 -812 3 867 297 0 0 0 chr4 37002965 37002998 -118627122 + (A)n Simple_repeat Simple_repeat 1 33 0 4 867 364 295 88 54 chr4 37003534 37003681 -118626439 - ID_B1 SINE B4 -69 155 4 5 867 4359 228 79 22 chr4 37003883 37005092 -118625028 - Lx3C LINE L1 -2 6974 5698 6 867 915 64 21 0 chr4 37005663 37005803 -118624317 + (CA)n Simple_repeat Simple_repeat 1 143 0 7 867 489 17 0 0 chr4 37005812 37005870 -118624250 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 8 867 236 418 81 35 chr4 37005888 37006148 -118623972 - Arthur1B DNA Tip100 -933 292 21 9 867 252 316 38 0 chr4 37006408 37006487 -118623633 + ID2 SINE ID 1 82 -1 1 867 364 265 0 0 chr4 37006551 37006634 -118623486 + RSINE1 SINE B4 55 137 -28 1 867 528 45 0 0 chr4 37007292 37007359 -118622761 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 867 201 39 0 0 chr4 37008292 37008318 -118621802 + (CATTT)n Simple_repeat Simple_repeat 2 27 0 1 867 1159 62 0 0 chr4 37008690 37008834 -118621286 + B1_Mm SINE Alu 1 144 -3 1 867 450 0 0 0 chr4 37008834 37008884 -118621236 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 867 23 0 0 0 chr4 37008946 37008969 -118621151 + AT_rich Low_complexity Low_complexity 1 23 0 1 867 216 0 0 0 chr4 37011660 37011684 -118618436 + (TTG)n Simple_repeat Simple_repeat 3 26 0 1 867 516 352 38 4 chr4 37012812 37013077 -118617043 + B4A SINE B4 1 274 -18 1 867 273 203 195 41 chr4 37013635 37013758 -118616362 - L1MA7 LINE L1 -1 6290 6149 1 867 198 0 0 0 chr4 37014113 37014135 -118615985 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 867 1244 306 16 5 chr4 37014580 37014951 -118615169 - ERVL-int LTR ERVL -905 4852 4478 2 867 267 382 48 39 chr4 37015227 37015495 -118614625 - ORR1D2 LTR MaLR -81 298 1 2 867 387 346 39 0 chr4 37015500 37015682 -118614438 - ERVL-int LTR ERVL -1640 4074 3886 2 867 851 340 124 13 chr4 37015682 37016135 -118613985 - MTEa-int LTR MaLR -1077 503 1 2 867 783 281 146 9 chr4 37016136 37016452 -118613668 - MTEa LTR MaLR -7 372 14 2 867 732 284 74 39 chr4 37016595 37017027 -118613093 + L1_Mur3 LINE L1 4272 4718 -1162 2 867 708 280 36 47 chr4 37017833 37018107 -118612013 + Lx7 LINE L1 7144 7414 -282 2 867 546 100 20 10 chr4 37018190 37018291 -118611829 + (GGGAGA)n Simple_repeat Simple_repeat 6 107 0 2 867 4744 100 20 36 chr4 37019761 37020311 -118609809 - L1_Mur1 LINE L1 -176 5710 5158 2 867 2821 78 26 8 chr4 37020311 37020700 -118609420 - MTA_Mm LTR MaLR 0 396 1 2 867 4744 100 20 36 chr4 37020700 37020896 -118609224 - L1_Mur1 LINE L1 -729 5157 4976 2 867 8390 118 20 8 chr4 37020882 37022197 -118607923 + Lx3_Mus LINE L1 5662 6991 -18 2 867 201 74 0 0 chr4 37022974 37023001 -118607119 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 867 218 313 39 74 chr4 37023552 37023680 -118606440 - PB1D10 SINE Alu -1 119 1 3 867 201 196 0 0 chr4 37023703 37023749 -118606371 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 867 555 252 67 44 chr4 37023865 37024255 -118605865 + L1MC5 LINE L1 7487 7885 -76 3 867 339 105 0 0 chr4 37024976 37025033 -118605087 + (CCAA)n Simple_repeat Simple_repeat 3 59 0 3 867 213 94 0 0 chr4 37026156 37026188 -118603932 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 3 867 201 208 27 27 chr4 37026194 37026211 -118603909 + A-rich Low_complexity Low_complexity 5 21 0 3 867 1082 63 0 21 chr4 37026211 37026356 -118603764 + B1_Mm SINE Alu 5 146 -1 3 867 201 208 27 27 chr4 37026356 37026412 -118603708 + A-rich Low_complexity Low_complexity 22 78 0 3 867 1548 239 70 16 chr4 37027050 37027437 -118602683 - MTD LTR MaLR 0 419 12 3 867 218 139 37 37 chr4 37027437 37027519 -118602601 + A-rich Low_complexity Low_complexity 2 83 0 4 867 21 0 0 0 chr4 37027628 37027649 -118602471 + AT_rich Low_complexity Low_complexity 1 21 0 4 867 367 330 0 27 chr4 37027697 37027809 -118602311 - PB1D10 SINE Alu -8 109 1 4 867 23 0 0 0 chr4 37027904 37027927 -118602193 + AT_rich Low_complexity Low_complexity 1 23 0 4 867 652 290 60 11 chr4 37028138 37028323 -118601797 - B3 SINE B2 -21 195 2 4 867 826 288 109 74 chr4 37028374 37028712 -118601408 + ORR1E LTR MaLR 6 355 -4 4 867 3998 105 12 101 chr4 37028859 37029319 -118600801 + RMER17A LTR ERVK 1 405 -346 4 867 1137 67 0 33 chr4 37029319 37029503 -118600617 + (TC)n Simple_repeat Simple_repeat 2 179 0 4 867 3998 105 12 101 chr4 37029503 37029866 -118600254 + RMER17A LTR ERVK 406 751 0 4 867 314 219 64 37 chr4 37030711 37030820 -118599300 + GA-rich Low_complexity Low_complexity 3 114 0 4 867 3758 91 4 6 chr4 37031036 37031554 -118598566 - L1_Mus3 LINE L1 -13 6625 6109 4 867 1922 257 77 19 chr4 37031644 37032278 -118597842 - Lx9 LINE L1 -1 7643 6973 5 867 242 289 44 15 chr4 37032663 37032800 -118597320 - L1M2 LINE L1 -860 5283 5143 5 867 227 333 8 77 chr4 37033111 37033228 -118596892 - RMER4B LTR ERVK -470 115 7 5 867 506 210 8 0 chr4 37033463 37033582 -118596538 + CT-rich Low_complexity Low_complexity 3 122 0 5 867 1179 117 0 0 chr4 37033584 37033764 -118596356 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 867 351 288 9 55 chr4 37033819 37033929 -118596191 - RSINE1 SINE B4 -2 163 59 5 867 256 297 164 14 chr4 37033979 37034309 -118595811 - L1M2 LINE L1 -1351 4792 4411 5 867 857 99 13 7 chr4 37034309 37034461 -118595659 - L1_Mus3 LINE L1 -1 6637 6485 5 867 256 297 164 14 chr4 37034461 37034478 -118595642 - L1M2 LINE L1 -1733 4410 4394 5 867 649 322 163 32 chr4 37034607 37035011 -118595109 + Tigger7 DNA MER2_type 580 1036 -1455 5 867 1157 239 130 12 chr4 37035044 37035459 -118594661 + Lx9 LINE L1 7181 7644 0 5 867 1594 194 85 0 chr4 37035761 37036101 -118594019 + Lx2 LINE L1 6623 6991 -6 5 867 317 348 87 19 chr4 37036145 37036353 -118593767 - MTE-int LTR MaLR -540 1040 819 6 867 1964 114 0 0 chr4 37036470 37036760 -118593360 + L1_Mur1 LINE L1 4690 4979 -907 6 867 5549 169 28 3 chr4 37036760 37037813 -118592307 + Lx3_Mus LINE L1 5931 7009 0 6 867 258 32 0 0 chr4 37038047 37038078 -118592042 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 867 305 238 34 151 chr4 37038083 37038202 -118591918 + MLT1D LTR MaLR 401 505 0 6 867 226 295 109 104 chr4 37038750 37038943 -118591177 + L1MDa LINE L1 329 522 -6111 6 867 5164 125 41 8 chr4 37038956 37039817 -118590303 + Lx3C LINE L1 6086 6974 -2 6 867 23 54 0 0 chr4 37040028 37040065 -118590055 + AT_rich Low_complexity Low_complexity 1 37 0 6 867 251 367 64 0 chr4 37040074 37040183 -118589937 - ID_B1 SINE B4 -20 204 89 6 867 279 232 248 9 chr4 37040209 37040322 -118589798 + B1_Mur1 SINE Alu 8 147 -2 6 867 198 0 0 0 chr4 37040327 37040349 -118589771 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 7 867 21 0 0 0 chr4 37041285 37041306 -118588814 + AT_rich Low_complexity Low_complexity 1 21 0 7 867 329 321 0 0 chr4 37041443 37041527 -118588593 - B4A SINE B4 -20 272 189 7 867 368 315 28 91 chr4 37041544 37041687 -118588433 - B4 SINE B4 -156 136 3 7 867 1889 191 23 28 chr4 37041997 37042390 -118587730 + ORR1B1 LTR MaLR 1 391 -3 7 867 22 0 0 0 chr4 37042548 37042570 -118587550 + AT_rich Low_complexity Low_complexity 1 22 0 7 867 22 35 0 0 chr4 37042624 37042653 -118587467 + AT_rich Low_complexity Low_complexity 1 29 0 7 867 786 320 38 14 chr4 37042735 37043023 -118587097 + MTD LTR MaLR 110 404 -15 7 867 21 71 0 0 chr4 37043261 37043303 -118586817 + AT_rich Low_complexity Low_complexity 1 42 0 7 867 204 97 0 0 chr4 37043368 37043399 -118586721 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 867 21 71 0 0 chr4 37043878 37043920 -118586200 + AT_rich Low_complexity Low_complexity 1 42 0 7 867 604 294 7 77 chr4 37043963 37044236 -118585884 + RMER1B Other Other 595 848 -218 8 867 247 229 0 0 chr4 37044237 37044285 -118585835 + (TA)n Simple_repeat Simple_repeat 1 48 0 8 867 198 0 0 0 chr4 37044286 37044308 -118585812 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 867 2189 286 103 13 chr4 37044410 37045199 -118584921 + RMER1C Other Other 479 1338 -4 8 867 21 0 0 0 chr4 37045337 37045358 -118584762 + AT_rich Low_complexity Low_complexity 1 21 0 8 867 965 229 38 35 chr4 37045969 37046308 -118583812 + L1_Mur3 LINE L1 891 1230 -6498 8 867 22 80 0 0 chr4 37046532 37046582 -118583538 + AT_rich Low_complexity Low_complexity 1 50 0 8 867 183 189 9 28 chr4 37047116 37047225 -118582895 + A-rich Low_complexity Low_complexity 2 108 0 8 867 3897 224 30 31 chr4 37047237 37048014 -118582106 + L1_Mur3 LINE L1 1265 2054 -3823 8 867 558 79 0 0 chr4 37048014 37048090 -118582030 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 867 3897 224 30 31 chr4 37048090 37048454 -118581666 + L1_Mur3 LINE L1 2055 2403 -3474 8 867 8019 216 61 29 chr4 37048458 37050585 -118579535 + L1_Mur3 LINE L1 3076 5271 -606 8 867 496 157 120 0 chr4 37050583 37050691 -118579429 + MusHAL1 LINE L1 885 1005 -1707 8 867 4124 161 7 1 chr4 37050686 37051369 -118578751 + Lx2 LINE L1 5959 6645 -352 9 867 1280 146 5 0 chr4 37051358 37051564 -118578556 + Lx2 LINE L1 6765 6971 -26 9 867 369 0 0 0 chr4 37051564 37051605 -118578515 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 9 867 396 40 0 0 chr4 37053303 37053353 -118576767 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 867 198 0 0 0 chr4 37053720 37053742 -118576378 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 867 233 192 58 0 chr4 37054041 37054093 -118576027 + L1MC3 LINE L1 5945 5999 -1786 9 867 1360 357 93 42 chr4 37054224 37055420 -118574700 - Lx8 LINE L1 -33 7440 6184 9 867 25 83 0 0 chr4 37055583 37055643 -118574477 + AT_rich Low_complexity Low_complexity 1 60 0 9 867 291 385 0 0 chr4 37055671 37055762 -118574358 + ID_B1 SINE B4 97 187 -37 9 867 354 287 115 26 chr4 37055796 37055988 -118574132 + Lx7 LINE L1 5691 5902 -1558 9 867 318 287 113 30 chr4 37056367 37056500 -118573620 - RSINE1 SINE B4 -19 146 3 9 867 388 315 139 6 chr4 37056657 37056823 -118573297 + B3A SINE B2 1 188 -10 1 867 1898 146 135 0 chr4 37057995 37058084 -118572036 - Lx LINE L1 -1 6653 6536 1 867 194 0 39 0 chr4 37058084 37058110 -118572010 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 1 867 1898 146 135 0 chr4 37058110 37058369 -118571751 - Lx LINE L1 -119 6535 6259 1 867 324 64 0 0 chr4 37058433 37058480 -118571640 + (A)n Simple_repeat Simple_repeat 1 47 0 1 867 3878 46 2 0 chr4 37058480 37058955 -118571165 - L1_Mus1 LINE L1 -505 6062 5587 1 867 857 149 7 0 chr4 37058932 37059096 -118571024 + L1_Mus1 LINE L1 6404 6567 0 1 867 999 114 0 7 chr4 37059109 37059250 -118570870 + B1_Mm SINE Alu 1 140 -7 1 867 1103 237 65 4 chr4 37059296 37059571 -118570549 + Lx7 LINE L1 7048 7339 -357 9 867 198 0 0 0 chr4 37059601 37059623 -118570497 + (T)n Simple_repeat Simple_repeat 1 22 0 1 867 338 212 0 24 chr4 37059748 37059830 -118570290 + Lx7 LINE L1 7617 7696 0 9 867 31 26 0 0 chr4 37060745 37060783 -118569337 + AT_rich Low_complexity Low_complexity 1 38 0 1 867 21 0 0 0 chr4 37060802 37060823 -118569297 + AT_rich Low_complexity Low_complexity 1 21 0 1 867 30 103 0 0 chr4 37060943 37061050 -118569070 + AT_rich Low_complexity Low_complexity 1 107 0 1 867 507 17 0 0 chr4 37061062 37061122 -118568998 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 867 367 341 7 56 chr4 37061125 37061164 -118568956 - B3A SINE B2 -48 150 118 1 867 945 198 35 44 chr4 37061164 37061391 -118568729 - URR1B DNA MER1_type 0 225 1 1 867 367 341 7 56 chr4 37061391 37061494 -118568626 - B3A SINE B2 -81 117 15 1 867 232 279 0 65 chr4 37062485 37062577 -118567543 + L1MC LINE L1 3812 3897 -2249 1 867 482 317 66 80 chr4 37062588 37063017 -118567103 + L1MD LINE L1 3922 4362 -1784 1 867 639 0 0 0 chr4 37063017 37063088 -118567032 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 867 327 324 90 16 chr4 37063108 37063296 -118566824 + L1MD LINE L1 5256 5457 -785 1 867 349 200 0 0 chr4 37063520 37063580 -118566540 + ORR1C2 LTR MaLR 1 60 -314 1 867 1340 156 0 0 chr4 37063583 37063795 -118566325 + Lx3B LINE L1 6536 6747 -226 1 867 752 28 104 0 chr4 37063810 37063916 -118566204 - L1Md_F3 LINE L1 -12 6572 6456 1 867 4420 67 2 7 chr4 37063916 37064494 -118565626 - L1_Mm LINE L1 -377 5506 4929 1 867 19273 44 2 7 chr4 37064492 37066920 -118563200 + L1_Mm LINE L1 2507 4922 -961 1 867 899 174 153 0 chr4 37066921 37067111 -118563009 + Lx3B LINE L1 6755 6973 0 1 867 1302 203 12 139 chr4 37067136 37067468 -118562652 + ORR1C2 LTR MaLR 95 384 0 1 867 383 38 19 0 chr4 37069030 37069083 -118561037 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 867 2812 200 7 34 chr4 37069094 37069680 -118560440 - RLTR20B3 LTR ERVK -7 570 1 1 867 597 366 80 6 chr4 37069682 37070031 -118560089 + Lx9 LINE L1 6308 6682 -962 1 867 632 345 25 22 chr4 37070042 37070199 -118559921 + Lx9 LINE L1 6730 6891 -753 1 867 282 29 0 0 chr4 37070199 37070234 -118559886 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 867 632 345 25 22 chr4 37070234 37070396 -118559724 + Lx9 LINE L1 6892 7050 -594 1 867 22 80 0 0 chr4 37070895 37070945 -118559175 + AT_rich Low_complexity Low_complexity 1 50 0 1 867 1056 251 125 14 chr4 37071553 37072136 -118557984 + Lx9 LINE L1 6935 7617 -27 1 867 584 323 66 8 chr4 37073220 37073601 -118556519 + L1MA8 LINE L1 5856 6258 -33 1 867 25 0 0 0 chr4 37073788 37073813 -118556307 + AT_rich Low_complexity Low_complexity 1 25 0 1 867 22 0 0 0 chr4 37074222 37074244 -118555876 + AT_rich Low_complexity Low_complexity 1 22 0 1 867 517 265 148 32 chr4 37074244 37074521 -118555599 + MTD-int LTR MaLR 950 1258 0 1 867 582 314 18 76 chr4 37074523 37074791 -118555329 + MTD LTR MaLR 6 264 -155 1 867 249 297 51 0 chr4 37075500 37075615 -118554505 - L1M5 LINE L1 -574 5785 5664 1 867 487 268 59 0 chr4 37075709 37075929 -118554191 + L1MA6 LINE L1 6015 6247 -53 1 867 387 41 0 0 chr4 37076105 37076154 -118553966 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 867 5350 62 4 6 chr4 37076727 37077422 -118552698 - L1Md_F2 LINE L1 -14 6568 5875 1 867 2013 41 0 0 chr4 37077422 37077665 -118552455 + L1Md_F2 LINE L1 5640 5882 -700 1 867 252 184 56 22 chr4 37077917 37078006 -118552114 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 1 867 4999 7 0 0 chr4 37078303 37078906 -118551214 - L1Md_T LINE L1 0 6582 6026 1 867 202 114 29 0 chr4 37079710 37079745 -118550375 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 867 5014 248 73 57 chr4 37080359 37082206 -118547914 + Lx7 LINE L1 5513 7364 -332 1 867 1437 206 98 18 chr4 37082468 37082868 -118547252 + Lx9 LINE L1 7190 7621 -23 1 867 189 195 0 0 chr4 37082889 37082930 -118547190 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 867 277 326 29 6 chr4 37083363 37083536 -118546584 + L1MA4A LINE L1 5759 5935 -368 1 867 191 136 0 43 chr4 37083541 37083587 -118546533 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1 867 576 199 46 0 chr4 37083865 37083996 -118546124 + B1_Mur1 SINE Alu 1 137 -12 1 867 6319 85 41 9 chr4 37084490 37085390 -118544730 + RLTR13B3 LTR ERVK 1 929 0 1 867 192 158 0 0 chr4 37086145 37086183 -118543937 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1 867 263 261 66 115 chr4 37087141 37087323 -118542797 - B2_Mm2 SINE B2 -11 184 12 1 867 480 238 16 24 chr4 37087865 37087990 -118542130 + Lx6 LINE L1 7165 7288 -172 1 867 30682 87 6 8 chr4 37088050 37093234 -118536886 + L1Md_F2 LINE L1 415 5585 -298 1 108 7206 78 7 8 chr4 37093235 37094221 -118535899 + L1Md_F2 LINE L1 5587 6571 -11 1 868 552 228 16 176 chr4 37094698 37094948 -118535172 - B3 SINE B2 -5 211 2 1 868 314 374 54 16 chr4 37095906 37096091 -118534029 + ORR1E LTR MaLR 1 192 -167 1 868 243 0 0 0 chr4 37096285 37096312 -118533808 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 868 288 0 0 0 chr4 37096312 37096343 -118533777 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 868 333 0 0 0 chr4 37096477 37096514 -118533606 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 868 260 333 19 9 chr4 37096581 37096687 -118533433 + PB1D10 SINE Alu 10 116 -1 1 868 477 214 10 0 chr4 37099295 37099393 -118530727 + URR1B DNA MER1_type 127 225 0 1 868 531 0 0 0 chr4 37100218 37100277 -118529843 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 868 1553 288 22 5 chr4 37101026 37101438 -118528682 + MTD LTR MaLR 1 419 0 1 868 314 218 0 11 chr4 37101614 37101702 -118528418 - Lx9 LINE L1 -7 7637 7551 1 868 374 100 17 0 chr4 37101702 37101762 -118528358 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 868 227 31 0 30 chr4 37102030 37102063 -118528057 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 1 868 423 0 0 0 chr4 37103282 37103329 -118526791 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 868 246 62 0 0 chr4 37103764 37103796 -118526324 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 868 23 68 0 0 chr4 37104594 37104638 -118525482 + AT_rich Low_complexity Low_complexity 1 44 0 1 868 453 36 0 0 chr4 37106345 37106400 -118523720 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 868 1809 243 44 68 chr4 37106513 37106767 -118523353 - Lx6 LINE L1 -463 6997 6733 1 868 207 0 0 0 chr4 37106767 37106790 -118523330 + (TTG)n Simple_repeat Simple_repeat 3 25 0 1 868 1809 243 44 68 chr4 37106790 37107104 -118523016 - Lx6 LINE L1 -728 6732 6444 1 868 532 347 91 23 chr4 37107720 37108027 -118522093 - MTEa LTR MaLR -3 376 49 1 868 22 0 0 0 chr4 37108826 37108848 -118521272 + AT_rich Low_complexity Low_complexity 1 22 0 1 868 492 18 0 0 chr4 37110487 37110544 -118519576 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 868 407 19 19 0 chr4 37111169 37111221 -118518899 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 868 24 0 0 0 chr4 37111375 37111399 -118518721 + AT_rich Low_complexity Low_complexity 1 24 0 1 868 895 129 8 0 chr4 37111791 37111923 -118518197 + B1_Mus1 SINE Alu 15 147 -1 1 868 23 0 0 0 chr4 37112286 37112309 -118517811 + AT_rich Low_complexity Low_complexity 1 23 0 1 868 182 186 110 41 chr4 37112487 37112560 -118517560 + L3 LINE CR1 1104 1181 -3308 1 868 1329 157 22 30 chr4 37112671 37112863 -118517257 + Lx2 LINE L1 6728 6920 -77 1 868 7223 55 9 0 chr4 37112863 37113747 -118516373 - RLTR13B1 LTR ERVK -1 892 1 1 868 1329 157 22 30 chr4 37113747 37113824 -118516296 + Lx2 LINE L1 6921 6995 -2 1 868 1024 215 3 94 chr4 37114055 37114394 -118515726 + Lx7 LINE L1 7389 7696 0 1 868 718 238 37 90 chr4 37114424 37114724 -118515396 + Lx7 LINE L1 7386 7669 -27 1 868 254 125 0 24 chr4 37114739 37114780 -118515340 - L1_Mus3 LINE L1 -610 6028 5989 1 868 363 24 0 0 chr4 37114793 37114834 -118515286 + L1_Mus3 LINE L1 5881 5921 -717 1 868 2221 174 0 5 chr4 37114832 37115220 -118514900 + L1_Mus3 LINE L1 5989 6374 -264 1 868 323 248 29 53 chr4 37115229 37115368 -118514752 - MT2B LTR ERVL -388 145 12 1 868 313 295 30 40 chr4 37116702 37116801 -118513319 - PB1D10 SINE Alu 0 117 20 1 868 5576 58 50 9 chr4 37116858 37116980 -118513140 - L1Md_F2 LINE L1 -1 6581 6449 1 868 4201 75 7 14 chr4 37116980 37117548 -118512572 + LTRIS2 LTR ERV1 1 564 0 1 868 5576 58 50 9 chr4 37117548 37118168 -118511952 - L1Md_F2 LINE L1 -134 6448 5809 1 868 925 281 7 17 chr4 37118629 37118929 -118511191 - Lx9 LINE L1 -182 7462 7166 1 868 405 39 0 0 chr4 37118940 37118991 -118511129 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 868 318 235 47 0 chr4 37119052 37119137 -118510983 + L1M4 LINE L1 5631 5719 -459 1 868 1101 103 0 0 chr4 37119333 37119479 -118510641 + B1_Mus1 SINE Alu 1 146 -2 1 868 1044 146 0 0 chr4 37119479 37119657 -118510463 + (GAA)n Simple_repeat Simple_repeat 2 179 0 1 868 325 58 39 0 chr4 37119657 37119709 -118510411 + (GGA)n Simple_repeat Simple_repeat 1 54 0 1 868 711 124 0 0 chr4 37119701 37119814 -118510306 + (GA)n Simple_repeat Simple_repeat 1 113 0 1 868 520 311 120 31 chr4 37120361 37120909 -118509211 + L1MB8 LINE L1 5385 5981 -197 1 868 991 175 66 5 chr4 37120921 37121133 -118508987 + URR1B DNA MER1_type 1 225 0 1 868 269 341 75 17 chr4 37122107 37122280 -118507840 + MIRb SINE MIR 75 257 -11 1 868 216 175 0 0 chr4 37122755 37122818 -118507302 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 868 618 14 0 0 chr4 37122818 37122889 -118507231 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 868 3659 9 0 1 chr4 37123191 37123702 -118506418 + L1Md_T LINE L1 5453 5961 -621 1 868 386 247 6 29 chr4 37123702 37123877 -118506243 + C-rich Low_complexity Low_complexity 5 175 0 1 868 586 256 7 3 chr4 37123843 37124129 -118505991 + CT-rich Low_complexity Low_complexity 1 287 0 2 868 414 204 0 0 chr4 37124204 37124292 -118505828 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 868 512 200 8 0 chr4 37124353 37124473 -118505647 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 868 206 21 122 20 chr4 37125013 37125062 -118505058 + T-rich Low_complexity Low_complexity 2 55 0 2 868 1077 96 7 0 chr4 37125066 37125212 -118504908 - B1_Mus2 SINE Alu 0 147 1 2 868 24 0 0 0 chr4 37126163 37126187 -118503933 + AT_rich Low_complexity Low_complexity 1 24 0 2 868 4653 182 2 5 chr4 37126485 37127320 -118502800 + Lx LINE L1 5816 6648 -6 2 868 903 201 57 65 chr4 37127470 37127840 -118502280 + L1_Mur1 LINE L1 3 316 -6668 2 868 18797 165 164 24 chr4 37127840 37128937 -118501183 + L1_Mur1 LINE L1 3 1270 -5714 2 868 315 0 0 0 chr4 37128937 37128972 -118501148 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 868 18797 116 29 3 chr4 37128972 37131968 -118498152 + L1_Mur1 LINE L1 1271 4324 -1562 2 868 5663 147 36 10 chr4 37131968 37132981 -118497139 + Lx3_Mus LINE L1 5946 6986 -23 2 868 258 32 0 0 chr4 37132981 37133012 -118497108 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2 868 241 186 0 0 chr4 37133192 37133235 -118496885 - ORR1B1 LTR MaLR -126 268 226 2 868 1085 180 5 0 chr4 37133231 37133420 -118496700 + ORR1B1 LTR MaLR 197 386 -8 2 868 452 274 9 9 chr4 37133449 37133563 -118496557 - URR1B DNA MER1_type -111 114 1 2 868 866 254 86 57 chr4 37133662 37133773 -118496347 + Lx6 LINE L1 6570 6664 -796 2 868 2267 46 0 7 chr4 37133773 37134059 -118496061 - L1Md_F3 LINE L1 -14 6570 6287 2 868 866 269 73 96 chr4 37134059 37134387 -118495733 + Lx6 LINE L1 6665 6986 -474 2 868 829 244 36 52 chr4 37134436 37134687 -118495433 + Lx6 LINE L1 7179 7425 -35 2 868 292 172 0 15 chr4 37134706 37134771 -118495349 - Lx2B LINE L1 -3 6997 6934 2 868 1039 335 100 24 chr4 37135020 37135642 -118494478 - Lx8 LINE L1 -477 6996 6328 2 868 390 21 0 0 chr4 37135771 37135818 -118494302 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 868 261 0 0 0 chr4 37135818 37135846 -118494274 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 868 250 330 104 29 chr4 37135880 37136120 -118494000 + Lx8 LINE L1 6537 6794 -679 2 868 419 333 45 19 chr4 37137279 37137435 -118492685 + Tigger5 DNA MER2_type 31 190 -2216 2 868 375 310 46 73 chr4 37138061 37138280 -118491840 + L1M5 LINE L1 4585 4797 -1349 2 868 217 174 0 21 chr4 37138283 37138330 -118491790 + (TAATG)n Simple_repeat Simple_repeat 3 48 0 2 868 221 197 14 43 chr4 37138760 37138829 -118491291 + (TATATG)n Simple_repeat Simple_repeat 1 67 0 2 868 22 0 0 0 chr4 37139091 37139113 -118491007 + AT_rich Low_complexity Low_complexity 1 22 0 2 868 206 326 11 11 chr4 37139116 37139209 -118490911 + (TATG)n Simple_repeat Simple_repeat 4 96 0 2 868 21 36 0 0 chr4 37139348 37139376 -118490744 + AT_rich Low_complexity Low_complexity 1 28 0 2 868 2774 47 0 15 chr4 37139790 37140133 -118489987 - L1_Mm LINE L1 -106 5777 5440 2 868 669 92 0 39 chr4 37140110 37140212 -118489908 - L1_Mm LINE L1 -770 5113 5016 2 868 5031 117 12 22 chr4 37140618 37142037 -118488083 + Lx LINE L1 5166 6637 -363 2 868 8321 39 1 0 chr4 37142037 37143032 -118487088 + L1Md_T LINE L1 5587 6582 0 2 868 3715 259 47 4084 chr4 37143032 37143385 -118486735 + Lx LINE L1 5587 5591 -292 2 868 180 0 0 0 chr4 37143389 37143409 -118486711 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 868 25 0 0 0 chr4 37144162 37144187 -118485933 + AT_rich Low_complexity Low_complexity 1 25 0 2 868 186 171 0 0 chr4 37144981 37145022 -118485098 + T-rich Low_complexity Low_complexity 1 41 0 2 868 27 29 0 0 chr4 37145622 37145656 -118484464 + AT_rich Low_complexity Low_complexity 1 34 0 2 868 306 278 32 65 chr4 37145667 37145790 -118484330 + B3A SINE B2 1 119 -79 2 868 405 294 207 23 chr4 37145964 37146138 -118483982 + MTE2a LTR MaLR 3 208 -171 2 868 5894 127 72 13 chr4 37146404 37147447 -118482673 - Lx3A LINE L1 -6 6975 5872 2 868 284 171 77 26 chr4 37147449 37147527 -118482593 - Lx6 LINE L1 -3 7457 7376 2 868 27 0 0 0 chr4 37147970 37147997 -118482123 + AT_rich Low_complexity Low_complexity 1 27 0 2 868 1725 95 30 0 chr4 37148001 37148263 -118481857 - L1_Mus3 LINE L1 -7 6631 6362 2 868 209 186 0 0 chr4 37148324 37148367 -118481753 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 868 357 333 36 7 chr4 37148375 37148514 -118481606 - B4A SINE B4 -84 208 66 2 868 5807 14 0 0 chr4 37148654 37149318 -118480802 + L1Md_T LINE L1 4923 5586 -297 2 868 8845 6 0 0 chr4 37149318 37150325 -118479795 + L1Md_T LINE L1 5587 6582 0 2 868 2941 81 0 0 chr4 37151392 37151810 -118478310 - L1_Mm LINE L1 -3839 2044 1627 2 868 1731 72 0 18 chr4 37151801 37152028 -118478092 + L1Md_F2 LINE L1 5364 5586 -297 2 868 7847 55 0 5 chr4 37152029 37153028 -118477092 + L1Md_F2 LINE L1 5588 6581 -1 2 868 1009 210 0 15 chr4 37153053 37153256 -118476864 + RMER19B LTR ERVK 703 902 0 2 868 2526 202 17 19 chr4 37153290 37153829 -118476291 - Lx4A LINE L1 -1 7057 6520 2 868 6908 138 23 11 chr4 37153829 37155070 -118475050 - L1_Mur2 LINE L1 -997 4880 3624 2 868 9029 197 35 58 chr4 37155053 37155519 -118474601 - L1_Mur2 LINE L1 -2629 3251 2873 2 868 1172 106 6 0 chr4 37155519 37155698 -118474422 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 868 495 0 0 0 chr4 37155698 37155753 -118474367 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 2 868 621 0 0 0 chr4 37155753 37155821 -118474299 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 2 868 9029 151 40 34 chr4 37155821 37157432 -118472688 - L1_Mur2 LINE L1 -3004 2873 1271 2 868 423 0 0 0 chr4 37157432 37157479 -118472641 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 868 9029 163 17 44 chr4 37157479 37158059 -118472061 - L1_Mur2 LINE L1 -4607 1270 706 2 868 1411 170 15 76 chr4 37158059 37158402 -118471718 - RLTRETN_Mm LTR ERVK 0 322 1 2 868 3599 164 15 45 chr4 37158402 37158473 -118471647 - L1_Mur2 LINE L1 -6381 705 639 2 868 26 30 0 0 chr4 37158766 37158799 -118471321 + AT_rich Low_complexity Low_complexity 1 33 0 2 868 198 71 0 0 chr4 37158893 37158921 -118471199 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 868 22 56 0 0 chr4 37158943 37158979 -118471141 + AT_rich Low_complexity Low_complexity 1 36 0 2 868 526 305 63 28 chr4 37158994 37159247 -118470873 - Lx7 LINE L1 -387 7309 7048 2 868 23 0 0 0 chr4 37160608 37160631 -118469489 + AT_rich Low_complexity Low_complexity 1 23 0 2 868 290 338 28 28 chr4 37160650 37160793 -118469327 + L1M5 LINE L1 2624 2766 -3380 2 868 2514 118 50 0 chr4 37161394 37161775 -118468345 - MTB LTR MaLR 0 400 1 2 868 726 208 7 7 chr4 37161776 37161926 -118468194 + ORR1B2 LTR MaLR 5 154 -213 2 868 272 27 0 26 chr4 37161928 37161966 -118468154 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 868 345 362 10 20 chr4 37162007 37162210 -118467910 + L1M5 LINE L1 4506 4706 -1440 2 868 21 36 0 0 chr4 37163028 37163056 -118467064 + AT_rich Low_complexity Low_complexity 1 28 0 2 868 186 43 0 0 chr4 37163066 37163089 -118467031 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 868 226 229 0 0 chr4 37163111 37163172 -118466948 + T-rich Low_complexity Low_complexity 1 61 0 2 868 367 245 31 0 chr4 37163211 37163309 -118466811 + L1M2 LINE L1 3240 3340 -2803 2 868 282 29 0 0 chr4 37163352 37163387 -118466733 + (CAA)n Simple_repeat Simple_repeat 3 37 0 2 868 4556 30 0 0 chr4 37163447 37163981 -118466139 + L1Md_A LINE L1 6047 6580 -2 2 868 464 259 45 28 chr4 37164339 37164518 -118465602 + L1_Mur3 LINE L1 3695 3876 -2004 2 868 23 54 0 0 chr4 37164543 37164580 -118465540 + AT_rich Low_complexity Low_complexity 1 37 0 2 868 3094 152 2 2 chr4 37164586 37165108 -118465012 - Lx4B LINE L1 -1249 5809 5288 2 868 36152 26 1 1 chr4 37165102 37172185 -118457935 - L1Md_T LINE L1 0 6585 1 2 868 1411 165 142 60 chr4 37172182 37172563 -118457557 - Lx4B LINE L1 -579 5298 4887 2 868 5023 210 56 16 chr4 37172567 37172873 -118457247 + Lx2B LINE L1 5817 6158 -842 2 868 3343 48 0 0 chr4 37172873 37173269 -118456851 - MTA_Mm LTR MaLR 0 396 1 2 868 5023 210 56 16 chr4 37173269 37174100 -118456020 + Lx2B LINE L1 6159 6999 -1 2 868 258 335 49 31 chr4 37174134 37174297 -118455823 + L1M4 LINE L1 5370 5535 -639 2 868 27 29 0 0 chr4 37174757 37174791 -118455329 + AT_rich Low_complexity Low_complexity 1 34 0 2 868 350 305 181 15 chr4 37175477 37175610 -118454510 + RSINE1 SINE B4 11 165 0 2 868 359 300 149 17 chr4 37175893 37176335 -118453785 - L1MC1 LINE L1 -104 6413 5914 2 868 300 284 31 78 chr4 37176536 37176792 -118453328 - L1MC1 LINE L1 -747 5572 5329 2 868 8298 154 25 9 chr4 37176795 37178833 -118451287 - Lx2A1 LINE L1 -5 7003 4929 2 868 3091 51 5 5 chr4 37178833 37179227 -118450893 + L1Md_F2 LINE L1 6177 6570 -12 2 868 6308 179 4 14 chr4 37179227 37179458 -118450662 - Lx2A1 LINE L1 -949 4928 4700 2 868 475 307 99 21 chr4 37179683 37180115 -118450005 - L1MC1 LINE L1 -1233 5086 4621 2 868 301 335 102 29 chr4 37180326 37180600 -118449520 - L1MC1 LINE L1 -5961 439 146 2 868 236 329 0 0 chr4 37180630 37180712 -118449408 + CT-rich Low_complexity Low_complexity 3 84 0 2 868 26 50 0 0 chr4 37180840 37180880 -118449240 + AT_rich Low_complexity Low_complexity 1 40 0 2 868 656 286 120 63 chr4 37181333 37181826 -118448294 - Charlie5 DNA MER1_type -807 1817 1297 2 868 687 257 38 113 chr4 37181833 37182203 -118447917 - Lx7 LINE L1 0 7696 7356 2 868 264 59 0 0 chr4 37182203 37182237 -118447883 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2 868 687 257 38 113 chr4 37182237 37182283 -118447837 - Lx7 LINE L1 -341 7355 7311 2 868 1611 365 22 14 chr4 37182873 37183586 -118446534 - RodERV21-int LTR ERV1 -286 4705 3987 2 868 180 0 0 0 chr4 37183617 37183637 -118446483 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2 868 216 0 0 0 chr4 37183637 37183661 -118446459 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2 868 1325 165 32 12 chr4 37183664 37183916 -118446204 - Lx3B LINE L1 -3 6970 6714 2 868 3862 271 51 20 chr4 37184123 37185073 -118445047 - Lx7 LINE L1 -381 7315 6343 2 868 195 100 0 0 chr4 37185073 37185103 -118445017 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 868 3862 271 51 20 chr4 37185103 37185288 -118444832 - Lx7 LINE L1 -1354 6342 6147 2 868 3090 66 2 2 chr4 37185311 37185707 -118444413 - MTA_Mm LTR MaLR 0 396 1 2 868 488 278 82 22 chr4 37186216 37186448 -118443672 - Lx7 LINE L1 -1538 6158 5913 2 868 32 43 0 0 chr4 37186565 37186611 -118443509 + AT_rich Low_complexity Low_complexity 1 46 0 2 868 231 243 88 26 chr4 37187043 37187157 -118442963 - L1MEf LINE L1 -4497 1703 1583 2 868 266 292 0 0 chr4 37187720 37187792 -118442328 + CT-rich Low_complexity Low_complexity 1 72 0 2 868 705 82 0 0 chr4 37188295 37188405 -118441715 + (TC)n Simple_repeat Simple_repeat 2 111 0 2 868 234 62 0 0 chr4 37188405 37188436 -118441684 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 868 403 310 35 17 chr4 37188446 37188561 -118441559 - B4A SINE B4 -16 276 160 2 868 3453 176 34 2 chr4 37188547 37189134 -118440986 - RMER13B LTR ERVK -302 606 1 2 868 382 302 20 30 chr4 37189136 37189235 -118440885 - B4A SINE B4 -178 114 17 2 868 1345 196 155 3 chr4 37189482 37189799 -118440321 + ORR1B2 LTR MaLR 3 367 0 2 868 21 0 0 0 chr4 37190508 37190529 -118439591 + AT_rich Low_complexity Low_complexity 1 21 0 3 868 2040 47 4 0 chr4 37190538 37190791 -118439329 + L1Md_T LINE L1 6329 6582 0 3 868 357 24 0 0 chr4 37191214 37191256 -118438864 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 868 897 337 115 57 chr4 37192537 37193258 -118436862 - RMER13A LTR ERVK -97 763 1 3 868 244 96 19 37 chr4 37193568 37193622 -118436498 + GA-rich Low_complexity Low_complexity 4 56 0 3 868 192 97 0 0 chr4 37193850 37193881 -118436239 + (A)n Simple_repeat Simple_repeat 1 31 0 3 868 1424 143 82 72 chr4 37194855 37195134 -118434986 + ORR1A4 LTR MaLR 5 286 -43 3 868 2936 209 127 42 chr4 37195132 37196393 -118433727 + ORR1A4-int LTR MaLR 389 1509 0 3 868 1055 167 91 3 chr4 37196393 37196675 -118433445 + ORR1A4 LTR MaLR 1 341 -5 3 868 425 171 100 0 chr4 37196680 37196750 -118433370 - Lx8 LINE L1 -180 7293 7217 3 868 22 0 0 0 chr4 37197605 37197627 -118432493 + AT_rich Low_complexity Low_complexity 1 22 0 3 868 229 205 0 0 chr4 37197646 37197685 -118432435 + Lx8 LINE L1 7109 7147 -326 3 868 4151 250 56 30 chr4 37197684 37198379 -118431741 + Lx9 LINE L1 6313 7020 -624 3 868 753 43 0 0 chr4 37198379 37198472 -118431648 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 868 4151 250 56 30 chr4 37198472 37199073 -118431047 + Lx9 LINE L1 7021 7643 -1 3 868 510 304 75 13 chr4 37199081 37199308 -118430812 + Lx8 LINE L1 7137 7377 -96 3 868 22 70 0 0 chr4 37199343 37199386 -118430734 + AT_rich Low_complexity Low_complexity 1 43 0 3 868 8900 5 1 0 chr4 37199955 37200946 -118429174 - L1Md_A LINE L1 0 6582 5591 3 868 8192 12 0 0 chr4 37200936 37201865 -118428255 + L1Md_A LINE L1 4694 5622 -261 3 868 6781 108 32 3 chr4 37202039 37203043 -118427077 - RLTR13D4 LTR ERVK 0 1033 1 3 868 487 188 504 0 chr4 37203153 37203304 -118426816 + ORR1B2 LTR MaLR 1 227 -140 3 868 373 189 0 64 chr4 37203352 37203447 -118426673 - Lx7 LINE L1 -1807 5889 5799 3 868 1251 152 38 4 chr4 37203447 37203684 -118426436 - Lx3_Mus LINE L1 0 7009 6765 3 868 3478 214 48 70 chr4 37203778 37205017 -118425103 - Lx7 LINE L1 -1825 4055 2844 3 868 225 227 0 22 chr4 37205229 37205274 -118424846 - B4 SINE B4 -206 86 43 3 868 1366 249 54 56 chr4 37205721 37206031 -118424089 + RMER6B LTR ERVK 1 316 -145 3 868 1654 152 11 113 chr4 37206031 37206395 -118423725 - ORR1A4 LTR MaLR -2 327 1 3 868 1366 249 54 56 chr4 37206395 37206530 -118423590 + RMER6B LTR ERVK 317 445 -16 3 868 681 327 39 0 chr4 37206688 37206896 -118423224 - B3 SINE B2 0 216 1 3 868 6699 161 60 24 chr4 37207048 37207123 -118422997 - L1_Mur2 LINE L1 -1168 4709 4624 3 868 260 27 27 0 chr4 37207123 37207160 -118422960 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 868 6699 161 60 24 chr4 37207160 37208398 -118421722 - L1_Mur2 LINE L1 -1254 4623 3348 3 868 1100 194 29 35 chr4 37208405 37208720 -118421400 + MurERV4_19-int LTR ERVK 5468 5780 0 3 868 1570 281 47 49 chr4 37208748 37209260 -118420860 + RMER19C LTR ERVK 88 598 -13 3 868 3815 56 0 8 chr4 37209260 37209744 -118420376 + L1Md_F3 LINE L1 6104 6583 -1 3 868 451 261 75 11 chr4 37209784 37209970 -118420150 + L1MB3 LINE L1 5707 5904 -279 3 868 21 57 0 0 chr4 37210054 37210089 -118420031 + AT_rich Low_complexity Low_complexity 1 35 0 3 868 288 0 0 0 chr4 37210244 37210276 -118419844 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 868 1133 69 0 14 chr4 37210279 37210426 -118419694 + B1_Mm SINE Alu 2 146 -1 3 868 254 143 16 0 chr4 37210442 37210505 -118419615 + A-rich Low_complexity Low_complexity 2 65 0 3 868 293 36 73 0 chr4 37210923 37210978 -118419142 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 868 2843 204 98 12 chr4 37211430 37212096 -118418024 - Lx3C LINE L1 -2 6974 6252 3 868 2321 174 84 4 chr4 37212081 37212543 -118417577 - L1_Mur2 LINE L1 -179 5698 5200 3 868 2631 252 33 6 chr4 37212539 37213173 -118416947 + Lx5 LINE L1 6383 7033 -17 3 868 342 45 0 0 chr4 37213174 37213218 -118416902 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 3 868 24 53 0 0 chr4 37213237 37213275 -118416845 + AT_rich Low_complexity Low_complexity 1 38 0 3 868 417 324 7 13 chr4 37213403 37213570 -118416550 - Lx8 LINE L1 -623 7073 6917 3 868 7402 117 5 1 chr4 37213758 37215396 -118414724 - L1_Mus3 LINE L1 -11 6627 4982 3 868 14523 145 28 45 chr4 37215387 37217086 -118413034 - L1_Mus3 LINE L1 -1877 4006 2311 3 868 955 117 20 7 chr4 37217086 37217232 -118412888 + B1_Mus1 SINE Alu 1 148 0 3 868 14523 185 31 36 chr4 37217232 37219055 -118411065 - L1_Mus3 LINE L1 -3573 2310 571 3 868 22 0 0 0 chr4 37219236 37219258 -118410862 + AT_rich Low_complexity Low_complexity 1 22 0 3 868 3667 54 30 38 chr4 37219421 37219924 -118410196 + L1Md_F3 LINE L1 6085 6583 -1 3 868 25 31 0 0 chr4 37219947 37219979 -118410141 + AT_rich Low_complexity Low_complexity 1 32 0 3 868 209 33 0 32 chr4 37220010 37220041 -118410079 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 868 546 283 68 26 chr4 37220041 37220233 -118409887 - B3 SINE B2 -14 202 3 3 868 23 54 0 0 chr4 37220245 37220282 -118409838 + AT_rich Low_complexity Low_complexity 1 37 0 3 868 3435 25 0 132 chr4 37220739 37221241 -118408879 - RLTR10C LTR ERVK 0 436 1 3 868 3145 103 45 2 chr4 37221241 37221706 -118408414 - MMERVK10C-int LTR ERVK 0 7680 7196 3 108 33617 39 5 0 chr4 37221698 37225689 -118404431 - MMERVK10C-int LTR ERVK -1020 6561 2552 3 869 366 111 0 0 chr4 37225695 37225758 -118404362 - MMERVK10C-int LTR ERVK -5634 1947 1885 3 869 311 172 17 0 chr4 37225765 37225823 -118404297 - MMERVK10C-int LTR ERVK -5627 1779 1721 3 869 291 269 113 23 chr4 37225823 37225956 -118404164 - MMERVK10C-int LTR ERVK -5469 668 524 3 869 729 202 262 12 chr4 37225952 37226192 -118403928 - MMERVK10C-int LTR ERVK -4795 611 312 3 869 464 139 0 0 chr4 37226283 37226362 -118403758 - MMERVK10C-int LTR ERVK -6629 952 874 3 869 778 193 6 6 chr4 37226392 37226574 -118403546 - MMERVK10C-int LTR ERVK -6671 910 729 3 869 2762 64 0 0 chr4 37226572 37226915 -118403205 - MMERVK10C-int LTR ERVK -7238 343 1 3 869 1277 117 29 14 chr4 37226915 37227124 -118402996 - RLTR10C LTR ERVK 0 436 225 3 869 3659 224 75 45 chr4 37227124 37229154 -118400966 - L1_Mur3 LINE L1 -3496 2384 300 3 869 21 71 0 0 chr4 37229253 37229295 -118400825 + AT_rich Low_complexity Low_complexity 1 42 0 3 869 21 82 0 0 chr4 37229386 37229435 -118400685 + AT_rich Low_complexity Low_complexity 1 49 0 3 869 24 32 0 0 chr4 37229519 37229550 -118400570 + AT_rich Low_complexity Low_complexity 1 31 0 3 869 27 0 0 0 chr4 37229785 37229812 -118400308 + AT_rich Low_complexity Low_complexity 1 27 0 3 869 384 340 49 7 chr4 37229846 37229988 -118400132 + B1F SINE Alu 1 148 -1 3 869 21 0 0 0 chr4 37230004 37230025 -118400095 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 396 321 75 25 chr4 37230576 37230854 -118399266 - L1MB1 LINE L1 -26 6142 5851 3 869 857 115 25 13 chr4 37231442 37231601 -118398519 - Lx3_Mus LINE L1 0 7009 6849 3 869 339 25 0 0 chr4 37231879 37231919 -118398201 + (ATTG)n Simple_repeat Simple_repeat 1 40 0 3 869 650 281 5 16 chr4 37232160 37232348 -118397772 - Lx6 LINE L1 -176 7284 7099 3 869 253 267 27 75 chr4 37233073 37233219 -118396901 + Lx6 LINE L1 7296 7434 -26 3 869 25 0 0 0 chr4 37233220 37233245 -118396875 + AT_rich Low_complexity Low_complexity 1 25 0 3 869 207 0 0 0 chr4 37233367 37233390 -118396730 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 869 791 165 45 17 chr4 37233390 37233569 -118396551 - Lx3A LINE L1 -15 6966 6783 3 869 318 264 54 31 chr4 37233623 37233637 -118396483 + CYRA11_Mm Unknown Y-chromosome 157 287 -329 3 869 574 193 18 0 chr4 37233637 37233751 -118396369 - URR1B DNA MER1_type 0 225 110 3 869 232 298 82 22 chr4 37233843 37234025 -118396095 + L1MD LINE L1 5208 5400 -746 3 869 27 49 0 0 chr4 37234305 37234346 -118395774 + AT_rich Low_complexity Low_complexity 1 41 0 3 869 284 335 42 5 chr4 37234633 37234822 -118395298 - L1_Rod LINE L1 -865 4982 4787 3 869 453 288 143 4 chr4 37235205 37235435 -118394685 - L1M2 LINE L1 -1809 4334 4073 3 869 573 269 63 52 chr4 37236135 37236421 -118393699 - L1_Mur3 LINE L1 -2081 3799 3511 3 869 239 190 24 48 chr4 37236428 37236511 -118393609 - L1_Mur3 LINE L1 -2970 2910 2830 3 869 2065 193 71 5 chr4 37236517 37236912 -118393208 + MTC LTR MaLR 1 421 0 3 869 797 295 54 25 chr4 37236979 37237459 -118392661 - L1_Mur3 LINE L1 -3133 2747 2254 3 869 495 0 0 0 chr4 37237743 37237798 -118392322 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 869 270 0 0 0 chr4 37237798 37237827 -118392293 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 869 361 296 82 62 chr4 37238383 37238426 -118391694 - L1MC LINE L1 -1125 5021 4982 3 869 5293 168 14 7 chr4 37238426 37239366 -118390754 - Lx2A1 LINE L1 0 7008 6063 3 869 361 296 82 62 chr4 37239366 37239678 -118390442 - L1MC LINE L1 -1165 4981 4659 3 869 235 312 0 0 chr4 37239684 37239764 -118390356 - L1MC LINE L1 -1660 4486 4407 3 869 540 329 100 31 chr4 37239764 37240216 -118389904 - L1MC LINE L1 -1856 4290 3808 3 869 518 124 11 0 chr4 37240274 37240363 -118389757 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 3 869 21 36 0 0 chr4 37240810 37240838 -118389282 + AT_rich Low_complexity Low_complexity 1 28 0 3 869 378 42 0 0 chr4 37241817 37241865 -118388255 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 869 23 0 0 0 chr4 37241988 37242011 -118388109 + AT_rich Low_complexity Low_complexity 1 23 0 3 869 450 94 0 0 chr4 37242119 37242183 -118387937 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 869 21 36 0 0 chr4 37242266 37242294 -118387826 + AT_rich Low_complexity Low_complexity 1 28 0 3 869 243 0 0 0 chr4 37242673 37242700 -118387420 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 869 1158 307 47 23 chr4 37243438 37243822 -118386298 - MTD LTR MaLR -1 418 26 3 869 235 289 0 0 chr4 37244255 37244307 -118385813 + tRNA-Ala-GCA tRNA tRNA 7 58 -17 3 869 438 229 21 0 chr4 37244836 37244932 -118385188 - ORR1D1 LTR MaLR -4 366 269 3 869 1283 260 120 9 chr4 37245438 37245772 -118384348 + RMER1B Other Other 45 415 -651 3 869 2340 293 154 14 chr4 37245742 37247063 -118383057 + RMER1A Other Other 1 1021 -9 3 869 183 42 0 0 chr4 37247063 37247087 -118383033 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 869 287 358 88 29 chr4 37247124 37247294 -118382826 - ORR1D1 LTR MaLR -190 180 1 3 869 4399 60 4 4 chr4 37247376 37247926 -118382194 - MMERVK10C-int LTR ERVK -386 7195 6646 3 869 2730 77 16 11 chr4 37247912 37248281 -118381839 - MMERVK10C-int LTR ERVK -1771 5810 5440 3 869 348 60 100 0 chr4 37248271 37248321 -118381799 - MMERVK10C-int LTR ERVK -7305 276 222 3 869 225 219 0 0 chr4 37248321 37248362 -118381758 - RLTR27 LTR ERVK -37 272 232 3 869 1411 72 6 0 chr4 37248362 37248542 -118381578 - MMERVK10C-int LTR ERVK -7400 181 1 3 869 3397 59 28 2 chr4 37248542 37248967 -118381153 - RLTR10C LTR ERVK 0 436 1 3 869 32 43 0 0 chr4 37248993 37249039 -118381081 + AT_rich Low_complexity Low_complexity 1 46 0 3 869 3077 115 10 40 chr4 37249045 37249231 -118380889 - Lx3_Mus LINE L1 0 7009 6834 3 869 3987 132 49 56 chr4 37249231 37249984 -118380136 + RMER17A LTR ERVK 1 748 -3 3 869 3077 115 10 40 chr4 37249984 37250268 -118379852 - Lx3_Mus LINE L1 -176 6833 6551 3 869 414 0 0 0 chr4 37250268 37250314 -118379806 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 869 3077 115 10 40 chr4 37250314 37250339 -118379781 - Lx3_Mus LINE L1 -459 6550 6528 3 869 21963 127 29 43 chr4 37250346 37254883 -118375237 - L1_Mur1 LINE L1 -878 5008 214 3 869 2415 134 11 0 chr4 37254884 37255256 -118374864 - Lx3_Mus LINE L1 -1 7008 6633 3 869 442 277 203 5 chr4 37255302 37255494 -118374626 - ORR1D1-int LTR MaLR -1018 352 123 3 869 831 290 53 16 chr4 37255504 37255749 -118374371 - ORR1D1 LTR MaLR -118 256 3 3 869 375 361 29 10 chr4 37255754 37255961 -118374159 + Lx8 LINE L1 6709 6919 -554 3 869 13178 114 68 5 chr4 37255968 37256098 -118374022 - L1VL4 LINE L1 -294 3265 3123 3 869 207 0 0 0 chr4 37256098 37256121 -118373999 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 869 13178 115 67 5 chr4 37256121 37258342 -118371778 - L1VL4 LINE L1 -437 3122 763 3 869 216 103 0 25 chr4 37258344 37258384 -118371736 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 869 1031 171 70 73 chr4 37258387 37258646 -118371474 - Lx LINE L1 0 6654 6397 4 869 2608 173 49 47 chr4 37258645 37259178 -118370942 - L1VL4 LINE L1 -5547 755 222 3 869 284 266 29 81 chr4 37259200 37259372 -118370748 + Lx7 LINE L1 7518 7680 -16 4 869 351 0 0 0 chr4 37259394 37259433 -118370687 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 869 354 61 0 0 chr4 37259985 37260034 -118370086 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 869 25 31 0 0 chr4 37260642 37260674 -118369446 + AT_rich Low_complexity Low_complexity 1 32 0 4 869 22 56 0 0 chr4 37260914 37260950 -118369170 + AT_rich Low_complexity Low_complexity 1 36 0 4 869 27 29 0 0 chr4 37261465 37261499 -118368621 + AT_rich Low_complexity Low_complexity 1 34 0 4 869 302 199 18 0 chr4 37261673 37261741 -118368379 + L1_Mur3 LINE L1 2937 3040 -3103 4 869 1148 111 0 6 chr4 37262498 37262679 -118367441 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 869 1010 122 0 4 chr4 37262700 37262949 -118367171 + (TTC)n Simple_repeat Simple_repeat 1 248 0 4 869 7062 142 51 8 chr4 37264045 37265270 -118364850 - Lx3C LINE L1 0 6976 5700 4 869 1250 153 10 0 chr4 37265267 37265470 -118364650 + Lx3C LINE L1 5502 5706 -180 4 869 23 33 0 0 chr4 37265639 37265669 -118364451 + AT_rich Low_complexity Low_complexity 1 30 0 4 869 24 32 0 0 chr4 37265754 37265785 -118364335 + AT_rich Low_complexity Low_complexity 1 31 0 4 869 23 0 0 0 chr4 37266953 37266976 -118363144 + AT_rich Low_complexity Low_complexity 1 23 0 4 869 232 119 34 0 chr4 37267057 37267116 -118363004 + T-rich Low_complexity Low_complexity 3 63 0 4 869 817 255 39 14 chr4 37267180 37267387 -118362733 - Lx5 LINE L1 -3 7047 6836 4 869 447 266 16 24 chr4 37267436 37267563 -118362557 + Lx9 LINE L1 5813 5938 -1706 4 869 1117 243 96 96 chr4 37267575 37267670 -118362450 - ORR1C1 LTR MaLR -12 366 300 4 869 2611 158 13 15 chr4 37267670 37268132 -118361988 - Lx2 LINE L1 0 6997 6537 4 869 1117 243 96 96 chr4 37268132 37268400 -118361720 - ORR1C1 LTR MaLR -79 299 3 4 869 974 26 0 0 chr4 37268785 37268899 -118361221 - L1_Mus1 LINE L1 -283 6283 6170 4 869 1908 103 18 4 chr4 37268899 37269173 -118360947 + L1_Mus1 LINE L1 6290 6567 0 4 869 303 122 0 0 chr4 37269664 37269713 -118360407 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 869 211 303 11 22 chr4 37269837 37269928 -118360192 + CT-rich Low_complexity Low_complexity 3 92 0 4 869 33 25 0 0 chr4 37269990 37270030 -118360090 + AT_rich Low_complexity Low_complexity 1 40 0 4 869 224 340 59 10 chr4 37270054 37270155 -118359965 - B1F SINE Alu -36 113 8 4 869 22 53 0 35 chr4 37270796 37270821 -118359299 + AT_rich Low_complexity Low_complexity 1 24 0 4 869 1086 83 0 7 chr4 37270821 37270966 -118359154 - B1_Mm SINE Alu -2 145 2 4 869 22 53 0 35 chr4 37270966 37270998 -118359122 + AT_rich Low_complexity Low_complexity 1 32 0 4 869 201 129 0 0 chr4 37271599 37271630 -118358490 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 869 983 159 18 7 chr4 37271661 37271843 -118358277 + Lx LINE L1 5937 6118 -536 4 869 999 156 39 39 chr4 37271844 37272078 -118358042 + Lx LINE L1 6421 6654 0 4 869 21 0 0 0 chr4 37272370 37272391 -118357729 + AT_rich Low_complexity Low_complexity 1 21 0 4 869 1103 308 59 3 chr4 37273020 37273407 -118356713 + Lx7 LINE L1 6863 7271 -425 4 869 30 0 0 0 chr4 37273472 37273502 -118356618 + AT_rich Low_complexity Low_complexity 1 30 0 4 869 23 68 0 0 chr4 37273527 37273571 -118356549 + AT_rich Low_complexity Low_complexity 1 44 0 4 869 12653 187 37 26 chr4 37273582 37277249 -118352871 + Lx5 LINE L1 3044 6767 -283 4 869 934 200 112 97 chr4 37277297 37277618 -118352502 + RLTR25B LTR ERVK 152 477 -551 4 869 909 267 8 28 chr4 37277620 37277874 -118352246 + Lx6 LINE L1 6590 6838 -622 4 869 318 365 55 107 chr4 37277881 37278228 -118351892 - MTE2a LTR MaLR -50 329 1 4 869 22 0 0 0 chr4 37278338 37278360 -118351760 + AT_rich Low_complexity Low_complexity 1 22 0 4 869 21 0 0 0 chr4 37278549 37278570 -118351550 + AT_rich Low_complexity Low_complexity 1 21 0 4 869 214 306 163 0 chr4 37280547 37280645 -118349475 - MIRc SINE MIR -133 135 22 4 869 318 233 14 0 chr4 37282223 37282296 -118347824 - Lx9 LINE L1 -363 7281 7208 4 869 296 353 0 0 chr4 37282310 37282378 -118347742 + ID4_ SINE ID 8 75 -8 4 869 489 194 46 41 chr4 37283909 37284103 -118346017 + RMER17C LTR ERVK 81 275 -135 4 869 414 134 0 0 chr4 37284148 37284215 -118345905 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 4 869 1087 281 76 26 chr4 37284273 37284696 -118345424 - Lx7 LINE L1 -737 6959 6516 4 869 723 109 0 30 chr4 37284706 37284838 -118345282 - L1Md_A LINE L1 -4 6578 6451 4 869 2900 250 61 25 chr4 37284974 37285890 -118344230 - RMER1A Other Other -138 892 64 4 869 842 172 9 139 chr4 37285891 37286121 -118343999 + RLTR25B LTR ERVK 575 774 -254 4 869 387 118 0 0 chr4 37286142 37286218 -118343902 + (CCTG)n Simple_repeat Simple_repeat 1 76 0 4 869 657 0 0 0 chr4 37286219 37286292 -118343828 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 4 869 227 180 80 0 chr4 37286701 37286751 -118343369 + U7 snRNA snRNA 8 61 -2 4 869 528 56 0 0 chr4 37286900 37286972 -118343148 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 869 329 271 68 93 chr4 37286984 37287102 -118343018 + RLTR25B LTR ERVK 825 939 -89 4 869 2869 232 59 65 chr4 37287129 37287355 -118342765 + L1_Mur3 LINE L1 4219 4429 -1451 4 869 1191 27 0 13 chr4 37287355 37287504 -118342616 + B1_Mm SINE Alu 1 147 0 4 869 271 60 20 20 chr4 37287511 37287562 -118342558 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 869 2869 232 59 65 chr4 37287562 37288295 -118341825 + L1_Mur3 LINE L1 4437 5180 -700 4 869 1247 238 74 0 chr4 37288297 37288595 -118341525 + Lx7 LINE L1 6387 6706 -990 4 869 22 0 0 0 chr4 37288799 37288821 -118341299 + AT_rich Low_complexity Low_complexity 1 22 0 4 869 984 248 20 20 chr4 37288955 37289225 -118340895 + Lx6 LINE L1 6394 6681 -1015 4 869 380 167 14 0 chr4 37289228 37289300 -118340820 + Lx6 LINE L1 6967 7039 -657 4 869 2993 199 64 9 chr4 37289308 37289949 -118340171 + RMER6D LTR ERVK 41 716 -4 4 869 35326 36 6 0 chr4 37290211 37295439 -118334681 + L1Md_T LINE L1 236 5589 -297 4 869 8979 6 0 0 chr4 37295439 37296435 -118333685 + L1Md_T LINE L1 5590 6585 0 4 869 30 0 0 0 chr4 37297489 37297519 -118332601 + AT_rich Low_complexity Low_complexity 1 30 0 4 869 33 73 0 0 chr4 37297966 37298034 -118332086 + AT_rich Low_complexity Low_complexity 1 68 0 4 869 31 26 0 0 chr4 37298208 37298246 -118331874 + AT_rich Low_complexity Low_complexity 1 38 0 4 869 10411 91 9 6 chr4 37298343 37300486 -118329634 - L1Md_F2 LINE L1 -14 6568 4419 4 869 6929 80 0 42 chr4 37300480 37301517 -118328603 + L1Md_F2 LINE L1 3436 4428 -1455 4 869 180 0 0 0 chr4 37302271 37302291 -118327829 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 869 3837 115 17 3 chr4 37302291 37302877 -118327243 - Lx3_Mus LINE L1 -20 6989 6396 4 869 4799 92 13 10 chr4 37302874 37303587 -118326533 + L1_Mur1 LINE L1 4236 4950 -936 4 869 728 73 0 0 chr4 37303582 37303678 -118326442 - L1Md_F2 LINE L1 -482 6100 6005 4 869 4344 63 0 7 chr4 37303679 37304239 -118325881 - L1Md_F2 LINE L1 0 6582 6027 4 869 6867 75 193 3 chr4 37304239 37305371 -118324749 + L1_Mm LINE L1 4196 5542 -341 4 869 34 0 0 0 chr4 37305378 37305412 -118324708 + AT_rich Low_complexity Low_complexity 1 34 0 4 869 1943 123 55 3 chr4 37306485 37306796 -118323324 - ORR1A2 LTR MaLR 0 327 1 4 869 280 329 0 12 chr4 37307227 37307313 -118322807 + B4A SINE B4 1 85 -207 4 869 417 109 0 0 chr4 37307441 37307505 -118322615 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 869 848 315 73 33 chr4 37307534 37307957 -118322163 + Lx9 LINE L1 6679 7118 -526 4 869 30 0 0 0 chr4 37308813 37308843 -118321277 + AT_rich Low_complexity Low_complexity 1 30 0 4 869 745 209 92 72 chr4 37308874 37309181 -118320939 + RMER2 LTR ERV1 47 400 -167 4 869 915 94 45 51 chr4 37309199 37309356 -118320764 - L1_Mus1 LINE L1 -5 6562 6407 4 869 5219 79 0 10 chr4 37309357 37310049 -118320071 + L1Md_F2 LINE L1 5723 6407 -175 4 869 822 267 53 47 chr4 37310185 37310484 -118319636 + RLTR12B LTR ERVK 11 311 -217 4 869 1324 205 137 18 chr4 37310841 37311169 -118318951 + ORR1B2 LTR MaLR 1 367 0 4 869 588 288 63 110 chr4 37311299 37311599 -118318521 + MTEb LTR MaLR 90 375 -4 4 869 1742 220 19 11 chr4 37311906 37312265 -118317855 - ORR1B1 LTR MaLR -4 390 29 4 869 1203 220 25 36 chr4 37312275 37312549 -118317571 + RLTR46 LTR ERVK 42 312 -8 4 869 428 241 51 112 chr4 37312561 37312757 -118317363 + IAPEY3-int LTR ERVK 3 186 -7494 4 869 3269 263 47 31 chr4 37312753 37313707 -118316413 + IAPEY3-int LTR ERVK 535 1503 -6177 4 869 330 175 0 0 chr4 37313729 37313786 -118316334 + MMERVK10C-int LTR ERVK 447 503 -6039 4 869 1937 125 8 4 chr4 37313786 37314084 -118316036 + MMERVK10C-int LTR ERVK 5414 5699 -1882 4 869 1229 112 37 5 chr4 37314103 37314291 -118315829 + MMERVK10C-int LTR ERVK 6849 7042 -539 4 869 1599 131 11 41 chr4 37314270 37314541 -118315579 + MMERVK10C-int LTR ERVK 7267 7529 -151 4 869 2550 55 3 0 chr4 37314543 37314854 -118315266 + RLTR10-int LTR ERVK 1486 1797 -190 4 869 733 103 0 0 chr4 37314880 37314987 -118315133 + MMERVK10C-int LTR ERVK 7475 7581 0 4 869 1279 192 29 40 chr4 37314997 37315273 -118314847 + RLTR46 LTR ERVK 43 315 -5 4 869 381 174 22 22 chr4 37315310 37315445 -118314675 + (TA)n Simple_repeat Simple_repeat 1 135 0 4 869 580 252 108 66 chr4 37316456 37316612 -118313508 - Lx7 LINE L1 0 7696 7524 4 869 194 0 39 0 chr4 37316612 37316638 -118313482 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 869 580 252 108 66 chr4 37316638 37316813 -118313307 - Lx7 LINE L1 -173 7523 7351 4 869 492 248 18 9 chr4 37316866 37316976 -118313144 + Lx7 LINE L1 6434 6544 -1152 4 869 1967 247 28 11 chr4 37316979 37317516 -118312604 - L1_Mur3 LINE L1 -267 5613 5068 4 869 259 172 85 17 chr4 37317522 37317581 -118312539 + L1_Mur3 LINE L1 4991 5053 -827 4 869 349 378 85 20 chr4 37317945 37318145 -118311975 + ID_B1 SINE B4 2 214 -10 4 869 335 283 49 105 chr4 37318437 37318716 -118311404 + L1MA4 LINE L1 5646 5904 -396 4 869 3365 145 29 7 chr4 37318754 37319309 -118310811 + RMER2 LTR ERV1 1 567 0 4 869 788 302 53 2 chr4 37319541 37319811 -118310309 - MTE2b LTR MaLR -68 311 34 4 869 386 349 77 12 chr4 37320058 37320226 -118309894 - B3A SINE B2 -19 179 1 4 869 306 312 12 12 chr4 37320917 37320998 -118309122 - B3A SINE B2 -115 83 3 4 869 34 55 0 0 chr4 37321005 37321060 -118309060 + AT_rich Low_complexity Low_complexity 1 55 0 4 869 1734 279 83 6 chr4 37321333 37321817 -118308303 - MT2A LTR ERVL -8 525 5 4 869 1534 185 44 25 chr4 37323603 37323963 -118306157 + Lx5 LINE L1 5610 5976 -1074 5 869 3082 241 16 32 chr4 37323979 37324502 -118305618 + Lx5 LINE L1 6125 6638 -412 5 869 390 21 0 0 chr4 37324502 37324549 -118305571 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 869 3082 241 16 32 chr4 37324549 37324754 -118305366 + Lx5 LINE L1 6639 6842 -208 5 869 198 71 0 0 chr4 37324806 37324834 -118305286 + (A)n Simple_repeat Simple_repeat 1 28 0 5 869 284 315 88 72 chr4 37324989 37325491 -118304629 + L1MC4a LINE L1 7238 7747 -135 5 869 251 276 40 20 chr4 37325831 37325931 -118304189 + MLT1K LTR MaLR 494 595 0 5 869 22 0 0 0 chr4 37326093 37326115 -118304005 + AT_rich Low_complexity Low_complexity 1 22 0 5 869 24 0 0 0 chr4 37326267 37326291 -118303829 + AT_rich Low_complexity Low_complexity 1 24 0 5 869 427 311 59 7 chr4 37326303 37326455 -118303665 - Lx8 LINE L1 -235 7238 7079 5 869 950 98 0 0 chr4 37326550 37326683 -118303437 - L1_Mm LINE L1 -772 5111 4979 5 869 7278 98 21 7 chr4 37326681 37327989 -118302131 + L1_Mus3 LINE L1 5314 6638 0 5 869 222 286 0 0 chr4 37328547 37328603 -118301517 + B3A SINE B2 14 69 -129 5 869 5689 35 4 0 chr4 37328771 37329454 -118300666 - L1Md_T LINE L1 0 6582 5897 5 869 800 114 0 0 chr4 37329454 37329577 -118300543 + L1_Mm LINE L1 2721 2843 -3040 5 869 271 281 102 77 chr4 37331062 37331386 -118298734 - L1M3 LINE L1 -529 5651 5320 5 869 940 321 25 50 chr4 37332676 37333090 -118297030 + MTE2a LTR MaLR 3 405 -14 5 869 393 19 0 0 chr4 37333171 37333225 -118296895 + L1_Mus1 LINE L1 6514 6567 0 5 869 41 66 0 0 chr4 37333238 37333314 -118296806 + AT_rich Low_complexity Low_complexity 1 76 0 5 869 505 275 154 29 chr4 37334835 37335075 -118295045 + ORR1D2 LTR MaLR 101 370 0 5 869 379 393 46 62 chr4 37335092 37335594 -118294526 + RMER15-int LTR ERVL 1647 2140 -2859 5 869 234 0 0 0 chr4 37335729 37335755 -118294365 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 869 1083 320 91 18 chr4 37335784 37336388 -118293732 + RMER15-int LTR ERVL 4141 4788 -211 5 869 3876 166 63 12 chr4 37337114 37337833 -118292287 + Lx2B LINE L1 6241 6995 -5 5 869 23 0 0 0 chr4 37337869 37337892 -118292228 + AT_rich Low_complexity Low_complexity 1 23 0 5 869 301 0 22 43 chr4 37338490 37338536 -118291584 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 869 2015 196 61 33 chr4 37338741 37339231 -118290889 - RLTR20B3 LTR ERVK -52 525 22 5 869 2608 124 9 14 chr4 37339234 37339659 -118290461 + Lx LINE L1 6225 6647 -7 5 869 371 137 14 0 chr4 37339720 37339793 -118290327 + Lx2A1 LINE L1 6934 7007 -1 5 869 204 40 0 0 chr4 37339823 37339848 -118290272 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 869 395 299 106 41 chr4 37340599 37340930 -118289190 + MTD LTR MaLR 14 400 -21 5 869 539 297 45 106 chr4 37340947 37341400 -118288720 + MTD-int LTR MaLR 1 510 -748 5 869 26 30 0 0 chr4 37341480 37341513 -118288607 + AT_rich Low_complexity Low_complexity 1 33 0 5 869 309 51 0 0 chr4 37342652 37342691 -118287429 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 869 277 147 26 44 chr4 37343056 37343170 -118286950 + GA-rich Low_complexity Low_complexity 5 116 0 5 869 329 323 38 62 chr4 37343199 37343534 -118286586 + L1M5 LINE L1 2744 3059 -3087 5 869 389 315 92 37 chr4 37343661 37344096 -118286024 + L1MD LINE L1 3533 3991 -2155 5 869 231 214 129 0 chr4 37344119 37344189 -118285931 - MTE2a LTR MaLR -17 362 284 5 869 333 311 181 20 chr4 37344465 37344764 -118285356 + L1MD LINE L1 5038 5384 -762 5 869 3043 184 79 17 chr4 37344854 37345501 -118284619 - Lx4B LINE L1 -765 6293 5607 5 869 2042 257 67 38 chr4 37345499 37346126 -118283994 + Lx2B LINE L1 6279 6923 -77 5 869 21 36 0 0 chr4 37346126 37346154 -118283966 + AT_rich Low_complexity Low_complexity 1 28 0 5 869 348 305 73 54 chr4 37346607 37346869 -118283251 - Lx8 LINE L1 -227 7246 6964 5 869 5476 48 3 4 chr4 37346869 37347553 -118282567 - L1Md_F2 LINE L1 0 6582 5900 5 869 2002 41 0 0 chr4 37347553 37347795 -118282325 + L1Md_F2 LINE L1 5672 5913 -669 5 869 227 275 88 0 chr4 37347809 37347889 -118282231 - Lx8 LINE L1 -501 6972 6886 5 869 464 382 90 10 chr4 37347893 37348205 -118281915 - Lx8 LINE L1 -792 6681 6345 5 869 21 36 0 0 chr4 37348476 37348504 -118281616 + AT_rich Low_complexity Low_complexity 1 28 0 5 869 1782 40 5 0 chr4 37349403 37349625 -118280495 + L1Md_F2 LINE L1 6359 6581 -1 5 869 522 369 53 10 chr4 37349636 37349734 -118280386 - Lx8 LINE L1 -149 7324 7228 5 869 7791 130 6 5 chr4 37349734 37350997 -118279123 - Lx3_Mus LINE L1 -8 7001 5738 5 869 522 369 53 10 chr4 37350997 37351202 -118278918 - Lx8 LINE L1 -246 7227 7008 5 869 268 409 33 7 chr4 37352355 37352505 -118277615 - RSINE1 SINE B4 -10 155 2 5 869 423 0 0 0 chr4 37352976 37353023 -118277097 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 869 1752 145 106 57 chr4 37354844 37355297 -118274823 + IAPLTR2_Mm LTR ERVK 1 475 0 5 870 531 299 71 9 chr4 37355680 37355977 -118274143 - L1_Mur3 LINE L1 -300 5586 5272 5 870 1369 250 64 55 chr4 37356504 37356940 -118273180 - Lx5 LINE L1 -6 7044 6605 5 870 2356 155 14 7 chr4 37356911 37357334 -118272786 - L1_Mur2 LINE L1 -1925 3952 3527 5 870 3583 206 15 93 chr4 37357327 37357535 -118272585 - L1_Mur2 LINE L1 -3619 2258 2087 5 870 976 98 7 27 chr4 37357535 37357682 -118272438 - B1_Mus1 SINE Alu -3 145 2 5 870 3583 206 15 93 chr4 37357682 37358260 -118271860 - L1_Mur2 LINE L1 -3791 2086 1570 5 870 204 48 71 0 chr4 37358260 37358302 -118271818 + (TTG)n Simple_repeat Simple_repeat 2 46 0 5 870 3583 207 21 62 chr4 37358302 37358980 -118271140 - L1_Mur2 LINE L1 -4308 1569 882 5 870 269 262 52 78 chr4 37360021 37360174 -118269946 - RLTR42-int LTR ERVK -1080 4442 4294 5 870 349 222 0 0 chr4 37360177 37360249 -118269871 - L1_Mur3 LINE L1 -780 5100 5029 5 870 1328 230 45 36 chr4 37360251 37360312 -118269808 + L1_Mur3 LINE L1 4602 4660 -1220 5 870 246 62 0 0 chr4 37360312 37360344 -118269776 + (CAG)n Simple_repeat Simple_repeat 1 32 0 5 870 1328 230 45 36 chr4 37360344 37360702 -118269418 + L1_Mur3 LINE L1 4661 5024 -856 5 870 465 84 0 0 chr4 37360811 37360882 -118269238 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 870 241 376 51 47 chr4 37361714 37361990 -118268130 - MamRep605 Unknown Unknown -187 689 413 5 870 22 80 0 0 chr4 37362563 37362613 -118267507 + AT_rich Low_complexity Low_complexity 1 50 0 5 870 5805 270 78 19 chr4 37362962 37363773 -118266347 - Lx7 LINE L1 0 7696 6804 5 870 617 213 243 17 chr4 37363773 37363954 -118266166 - URR1B DNA MER1_type -1 224 3 5 870 5805 270 78 19 chr4 37363954 37365059 -118265061 - Lx7 LINE L1 -893 6803 5668 5 870 3441 214 96 15 chr4 37365076 37365799 -118264321 - L1_Mur3 LINE L1 -1838 4042 3246 5 870 1065 84 0 0 chr4 37365799 37365953 -118264167 + (TC)n Simple_repeat Simple_repeat 1 154 0 5 870 3441 214 96 15 chr4 37365953 37366227 -118263893 - L1_Mur3 LINE L1 -2635 3245 2965 5 870 756 334 131 16 chr4 37366718 37367336 -118262784 + Lx9 LINE L1 6785 7473 -171 5 870 31 26 0 0 chr4 37367475 37367513 -118262607 + AT_rich Low_complexity Low_complexity 1 38 0 5 870 364 211 0 27 chr4 37367691 37367764 -118262356 - MTC LTR MaLR -350 71 1 5 870 565 279 166 13 chr4 37367878 37368085 -118262035 - MT2A LTR ERVL -161 332 96 5 870 1707 195 69 12 chr4 37368103 37368528 -118261592 + L1_Mur1 LINE L1 314 763 -6219 5 870 1059 154 17 68 chr4 37368529 37368766 -118261354 + Lx3A LINE L1 6751 6975 -6 5 870 2447 186 16 82 chr4 37368910 37369223 -118260897 - Lx5 LINE L1 -1109 5941 5629 5 870 1186 66 0 42 chr4 37369223 37369413 -118260707 + Lx3_Mus LINE L1 6828 7009 0 5 870 2447 231 70 43 chr4 37369413 37369854 -118260266 - Lx5 LINE L1 -249 5628 5162 5 870 1063 302 60 24 chr4 37369859 37370710 -118259410 + Lx5 LINE L1 5957 6886 -574 5 870 329 289 44 0 chr4 37370732 37370822 -118259298 - B1_Mur2 SINE Alu -55 94 1 5 870 24 32 0 0 chr4 37371033 37371064 -118259056 + AT_rich Low_complexity Low_complexity 1 31 0 5 870 22 35 0 0 chr4 37371342 37371371 -118258749 + AT_rich Low_complexity Low_complexity 1 29 0 5 870 191 88 29 0 chr4 37371492 37371526 -118258594 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 870 530 301 91 21 chr4 37371657 37371844 -118258276 + B3 SINE B2 16 215 -1 5 870 2403 285 118 29 chr4 37372141 37372965 -118257155 - RMER1C Other Other -2 1340 444 5 870 586 289 68 101 chr4 37372976 37373284 -118256836 + RLTR12B LTR ERVK 5 302 -266 5 870 304 331 59 46 chr4 37374105 37374257 -118255863 - L1M5 LINE L1 -642 5531 5378 5 870 964 194 59 14 chr4 37374646 37374939 -118255181 + Lx5 LINE L1 923 1294 -5792 5 870 13891 194 77 18 chr4 37374942 37378684 -118251436 + Lx5 LINE L1 2478 6441 -609 5 870 234 0 0 0 chr4 37378684 37378710 -118251410 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 870 6254 215 40 11 chr4 37378710 37379183 -118250937 + Lx5 LINE L1 6442 6939 -111 5 870 741 122 0 0 chr4 37379183 37379298 -118250822 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 5 870 189 0 0 0 chr4 37380381 37380402 -118249718 + (T)n Simple_repeat Simple_repeat 1 21 0 5 870 987 264 47 109 chr4 37380813 37381699 -118248421 - RLTR26 LTR ERVK -47 911 1 5 870 21 0 0 0 chr4 37381856 37381877 -118248243 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 360 224 0 0 chr4 37381886 37381984 -118248136 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 870 311 318 44 54 chr4 37382168 37382371 -118247749 + L1M4 LINE L1 5131 5331 -815 5 870 227 219 81 14 chr4 37382431 37382505 -118247615 + L1M4 LINE L1 5399 5477 -697 5 870 1356 289 30 5 chr4 37382549 37382918 -118247202 + L1_Mur3 LINE L1 354 731 -6997 5 870 1177 181 32 11 chr4 37382912 37383197 -118246923 + L1_Mur3 LINE L1 1400 1690 -4190 5 870 6719 135 34 4 chr4 37383204 37384299 -118245821 + Lx3A LINE L1 5809 6936 -45 5 870 13440 93 3 1 chr4 37384451 37387056 -118243064 - L1_Mus2 LINE L1 0 6566 3983 5 870 482 229 0 6 chr4 37387525 37387640 -118242480 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 870 515 16 16 0 chr4 37387640 37387704 -118242416 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 870 482 229 0 6 chr4 37387704 37387755 -118242365 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 870 183 205 0 0 chr4 37387767 37387806 -118242314 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 870 192 40 0 0 chr4 37389035 37389060 -118241060 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 870 3856 52 10 0 chr4 37389151 37389631 -118240489 - L1Md_F2 LINE L1 -2 6580 6096 5 870 1596 59 0 0 chr4 37389631 37389833 -118240287 + L1Md_F2 LINE L1 5885 6086 -496 5 870 1023 319 31 19 chr4 37389881 37390296 -118239824 + Lx8 LINE L1 6230 6649 -824 5 870 1484 251 36 78 chr4 37390700 37391223 -118238897 - RLTR20B3 LTR ERVK -56 521 21 5 870 605 309 35 50 chr4 37391437 37391638 -118238482 + B3A SINE B2 1 198 0 5 870 21 0 0 0 chr4 37391868 37391889 -118238231 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 255 308 170 71 chr4 37392070 37392381 -118237739 + MLT2C1 LTR ERVL 54 395 -2 5 870 28 0 0 0 chr4 37392429 37392457 -118237663 + AT_rich Low_complexity Low_complexity 1 28 0 5 870 1811 229 70 29 chr4 37392502 37392988 -118237132 + RMER5 LTR ERV1 1 506 -28 6 870 905 176 22 6 chr4 37394218 37394480 -118235640 - RMER6D LTR ERVK -68 622 256 6 870 5549 125 30 6 chr4 37394486 37395576 -118234544 - Lx LINE L1 0 6636 5497 6 870 1730 116 0 0 chr4 37395576 37395826 -118234294 - RMER6D LTR ERVK -470 250 1 6 870 229 24 24 0 chr4 37397581 37397622 -118232498 - L1Md_T LINE L1 -2 6580 6539 6 870 180 216 0 0 chr4 37397958 37398009 -118232111 + A-rich Low_complexity Low_complexity 1 51 0 6 870 330 132 0 0 chr4 37400435 37400488 -118229632 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 870 272 382 80 22 chr4 37400738 37400963 -118229157 + MLT1E1A LTR MaLR 380 617 -63 6 870 23 0 0 0 chr4 37401131 37401154 -118228966 + AT_rich Low_complexity Low_complexity 1 23 0 6 870 250 256 41 33 chr4 37401154 37401275 -118228845 - Lx7 LINE L1 0 7696 7575 6 870 514 243 28 14 chr4 37401390 37401532 -118228588 - Lx7 LINE L1 -346 7350 7207 6 870 239 289 0 0 chr4 37402358 37402414 -118227706 - ID4 SINE ID -71 81 26 6 870 1337 274 17 6 chr4 37402600 37402953 -118227167 + Lx7 LINE L1 6758 7114 -582 6 870 495 256 61 6 chr4 37403124 37403289 -118226831 - Lx7 LINE L1 -1835 5861 5688 6 870 396 229 29 51 chr4 37403589 37403727 -118226393 - RMER1B Other Other -1 1065 931 6 870 528 150 18 9 chr4 37403739 37403853 -118226267 + GA-rich Low_complexity Low_complexity 2 116 0 6 870 1196 297 151 30 chr4 37403877 37404926 -118225194 - RMER1B Other Other -156 910 44 6 870 350 363 71 0 chr4 37405010 37405123 -118224997 - ID_B1 SINE B4 -20 204 84 6 870 219 80 80 0 chr4 37405159 37405209 -118224911 + A-rich Low_complexity Low_complexity 2 55 0 6 870 2326 115 14 3 chr4 37405210 37405559 -118224561 - Lx3A LINE L1 -535 6446 6094 6 870 2943 134 78 0 chr4 37405559 37406035 -118224085 + Lx3A LINE L1 6463 6975 -6 6 870 21 0 0 0 chr4 37406036 37406057 -118224063 + AT_rich Low_complexity Low_complexity 1 21 0 6 870 3580 162 29 12 chr4 37406327 37406982 -118223138 - Lx3B LINE L1 -5 6968 6303 6 870 17149 178 37 30 chr4 37406982 37409455 -118220665 - Lx3B LINE L1 -1007 5966 3474 6 870 261 83 0 0 chr4 37409455 37409491 -118220629 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 870 17149 183 41 33 chr4 37409491 37410088 -118220032 - Lx3B LINE L1 -2413 3473 2855 6 870 239 250 0 0 chr4 37410088 37410136 -118219984 - B1_Mur2 SINE Alu -15 134 87 6 870 17149 183 41 33 chr4 37410136 37410942 -118219178 - Lx3B LINE L1 -2413 2854 2017 6 870 453 321 17 23 chr4 37411633 37411805 -118218315 + Lx8 LINE L1 6922 7092 -381 6 870 2167 216 116 25 chr4 37415016 37415576 -118214544 - RMER19C LTR ERVK 0 611 1 6 870 3645 14 0 0 chr4 37416119 37416535 -118213585 - L1Md_T LINE L1 0 6582 6167 6 870 407 273 9 18 chr4 37416645 37416757 -118213363 - Lx7 LINE L1 -812 6884 6774 6 870 3836 220 80 20 chr4 37416757 37417568 -118212552 + RMER13A LTR ERVK 1 860 0 6 870 216 0 0 0 chr4 37417602 37417626 -118212494 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 870 526 221 76 8 chr4 37417652 37417784 -118212336 + Lx6 LINE L1 6561 6701 -759 6 870 411 118 0 0 chr4 37418222 37418298 -118211822 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 6 870 2310 58 124 14 chr4 37418298 37418645 -118211475 - RLTR10 LTR ERVK -4 386 2 6 870 657 0 0 0 chr4 37418645 37418718 -118211402 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 6 870 587 269 50 25 chr4 37419402 37419604 -118210516 + RLTR15 LTR ERVK 1 207 -152 6 870 615 67 0 0 chr4 37419650 37419739 -118210381 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 870 190 0 32 32 chr4 37419739 37419769 -118210351 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 870 384 137 0 27 chr4 37420018 37420093 -118210027 - Lx2 LINE L1 -1 6996 6924 6 870 456 19 0 0 chr4 37421153 37421206 -118208914 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 870 464 66 0 0 chr4 37421495 37421556 -118208564 - L1_Mm LINE L1 -3448 2435 2375 6 870 5270 58 1 0 chr4 37421556 37422216 -118207904 + L1Md_F2 LINE L1 5921 6581 -1 6 870 3579 133 82 7 chr4 37422283 37422879 -118207241 - Lx2 LINE L1 -1 6996 6356 6 870 30 45 0 0 chr4 37424714 37424758 -118205362 + AT_rich Low_complexity Low_complexity 1 44 0 6 870 195 42 0 0 chr4 37425387 37425411 -118204709 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 870 703 283 49 31 chr4 37425734 37425960 -118204160 - MTD LTR MaLR -15 404 175 6 870 1720 107 7 7 chr4 37425960 37426232 -118203888 - L1_Mur1 LINE L1 -378 5508 5237 6 870 9071 50 3 85 chr4 37426228 37428103 -118202017 - L1Md_T LINE L1 0 6582 4905 6 870 227 31 31 0 chr4 37428103 37428135 -118201985 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 6 870 9071 101 6 179 chr4 37428135 37428157 -118201963 - L1_Mm LINE L1 -979 4904 4904 6 870 2779 64 0 3 chr4 37428157 37428516 -118201604 - L1_Mus2 LINE L1 -1 6565 6208 6 870 9071 101 6 179 chr4 37428516 37429306 -118200814 - L1Md_T LINE L1 -979 4904 4241 6 870 6935 129 17 16 chr4 37429306 37430453 -118199667 + Lx3_Mus LINE L1 5861 7009 0 6 870 396 140 10 51 chr4 37432658 37432756 -118197364 - Lx2 LINE L1 0 6997 6904 6 870 1371 347 56 30 chr4 37432904 37433762 -118196358 + Lx7 LINE L1 6433 7312 -384 6 870 410 234 7 0 chr4 37436144 37436298 -118193822 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 870 3879 118 15 3 chr4 37436446 37437146 -118192974 + L1_Mus4 LINE L1 6045 6636 0 6 870 5973 123 62 8 chr4 37437164 37437727 -118192393 - L1_Mur1 LINE L1 -562 5324 4736 6 870 1344 48 0 0 chr4 37437727 37437976 -118192144 + (TTC)n Simple_repeat Simple_repeat 1 249 0 6 870 5973 123 62 8 chr4 37437976 37438457 -118191663 - L1_Mur1 LINE L1 -1151 4735 4223 6 870 5597 170 10 55 chr4 37438476 37439651 -118190469 - L1_Mur2 LINE L1 -1042 4835 3714 6 870 6066 157 40 1 chr4 37439652 37441093 -118189027 + Lx LINE L1 5141 6646 -8 6 870 26 0 0 0 chr4 37441096 37441122 -118188998 + AT_rich Low_complexity Low_complexity 1 26 0 6 870 232 288 19 32 chr4 37441122 37441280 -118188840 + (CATATA)n Simple_repeat Simple_repeat 6 161 0 6 870 268 269 18 9 chr4 37441205 37441314 -118188806 + (TA)n Simple_repeat Simple_repeat 2 111 0 6 870 216 304 104 42 chr4 37442581 37442677 -118187443 + ID_B1 SINE B4 74 175 -49 6 870 320 272 11 21 chr4 37442607 37442701 -118187419 + PB1D9 SINE Alu 28 120 0 6 870 647 310 46 0 chr4 37443279 37443476 -118186644 - B3 SINE B2 -8 208 3 6 870 1352 298 128 41 chr4 37443700 37444928 -118185192 + L1_Mur2 LINE L1 4237 5571 -306 6 870 1758 349 61 34 chr4 37445041 37446411 -118183709 + Lx8 LINE L1 6037 7443 -30 6 870 22 0 0 0 chr4 37446494 37446516 -118183604 + AT_rich Low_complexity Low_complexity 1 22 0 6 870 29 0 0 0 chr4 37446842 37446871 -118183249 + AT_rich Low_complexity Low_complexity 1 29 0 6 870 1128 313 35 17 chr4 37447393 37447796 -118182324 - Lx5 LINE L1 -16 7034 6625 6 870 1435 28 11 27 chr4 37447960 37447983 -118182137 - B2_Mm1a SINE B2 -12 181 162 6 870 201 39 0 0 chr4 37447983 37448009 -118182111 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 870 1435 28 11 27 chr4 37448009 37448168 -118181952 - B2_Mm1a SINE B2 -32 161 3 6 870 1101 59 0 0 chr4 37448362 37448497 -118181623 - B1_Mus1 SINE Alu -9 139 5 6 870 275 309 0 0 chr4 37448756 37448837 -118181283 + L1_Mur1 LINE L1 236 316 -6666 6 870 26559 166 76 33 chr4 37448834 37450076 -118180044 + L1_Mur1 LINE L1 32 1616 -4270 6 870 227 54 27 0 chr4 37450076 37450113 -118180007 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 870 26559 122 27 22 chr4 37450113 37451060 -118179060 + L1_Mur1 LINE L1 1617 2583 -3303 6 870 2127 49 0 4 chr4 37451060 37451328 -118178792 + L1Md_A LINE L1 6315 6581 -1 6 870 26559 122 27 22 chr4 37451328 37454497 -118175623 + L1_Mur1 LINE L1 2584 5796 -90 6 870 4175 187 70 56 chr4 37454493 37454899 -118175221 + Lx3C LINE L1 285 733 -5905 6 870 1869 136 79 24 chr4 37454899 37455239 -118174881 + RLTR10D LTR ERVK 1 359 0 6 870 4175 144 49 39 chr4 37455239 37455799 -118174321 + Lx3C LINE L1 730 1270 -5368 6 870 11827 72 1 1 chr4 37455811 37457381 -118172739 + Lx3C LINE L1 4016 5587 -296 6 870 7189 93 1 3 chr4 37457381 37458367 -118171753 + L1Md_F2 LINE L1 5588 6571 -11 6 870 11827 153 0 3063 chr4 37458367 37458462 -118171658 + Lx3C LINE L1 5588 5592 -291 6 870 4545 143 33 5 chr4 37458463 37459217 -118170903 + Lx3_Mus LINE L1 6235 7009 0 6 870 23 54 0 0 chr4 37459392 37459429 -118170691 + AT_rich Low_complexity Low_complexity 1 37 0 6 870 1702 250 20 16 chr4 37459978 37460421 -118169699 - Lx7 LINE L1 -1094 6602 6158 6 870 238 184 0 0 chr4 37460429 37460478 -118169642 - MT2B LTR ERVL -1 600 552 6 870 201 154 0 0 chr4 37460486 37460525 -118169595 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 870 234 160 0 0 chr4 37460530 37460580 -118169540 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 870 390 210 6 0 chr4 37460617 37460718 -118169402 + Lx7 LINE L1 6655 6768 -928 6 870 2675 42 36 6 chr4 37460730 37461066 -118169054 - ORR1A1 LTR MaLR 0 346 1 6 870 257 256 22 11 chr4 37461066 37461157 -118168963 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 6 870 687 173 208 0 chr4 37461218 37461386 -118168734 + Lx2 LINE L1 6794 6996 -1 6 870 38 0 0 0 chr4 37461854 37461892 -118168228 + AT_rich Low_complexity Low_complexity 1 38 0 6 870 2485 44 3 0 chr4 37461997 37462312 -118167808 - L1Md_F3 LINE L1 -533 6051 5736 6 870 11677 52 1 0 chr4 37462308 37463795 -118166325 - L1_Mm LINE L1 -1447 4436 2948 6 870 3954 71 15 6 chr4 37463795 37464322 -118165798 + L1Md_F3 LINE L1 6048 6579 -5 6 870 2383 153 32 11 chr4 37464468 37464905 -118165215 - Lx3A LINE L1 -7 6974 6529 6 870 2396 140 130 15 chr4 37464905 37465465 -118164655 + L1_Mur1 LINE L1 4648 5303 -583 6 870 1213 62 0 0 chr4 37465465 37465611 -118164509 + B1_Mm SINE Alu 1 146 -1 6 870 2396 161 145 18 chr4 37465611 37465634 -118164486 + L1_Mur1 LINE L1 5295 5315 -562 6 870 1334 122 134 4 chr4 37465746 37465985 -118164135 - L1_Mus4 LINE L1 -2 6634 6365 6 870 1846 216 5 38 chr4 37465943 37466313 -118163807 + L1VL4 LINE L1 387 743 -5559 6 870 969 115 14 0 chr4 37466313 37466452 -118163668 + B1_Mur4 SINE Alu 1 141 -9 6 870 1846 216 5 38 chr4 37466452 37466524 -118163596 + L1VL4 LINE L1 744 814 -5488 6 870 1625 323 58 26 chr4 37466504 37467924 -118162196 + L1M2 LINE L1 3683 5147 -996 6 870 534 299 12 47 chr4 37467935 37468194 -118161926 + Lx7 LINE L1 5548 5820 -1876 6 870 7582 151 40 9 chr4 37468974 37470301 -118159819 - Lx2 LINE L1 -6 6991 5624 6 870 30 27 0 0 chr4 37471052 37471089 -118159031 + AT_rich Low_complexity Low_complexity 1 37 0 6 870 461 62 15 0 chr4 37472287 37472352 -118157768 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 870 252 122 0 0 chr4 37472361 37472402 -118157718 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 870 288 320 102 64 chr4 37472682 37472869 -118157251 - ORR1E LTR MaLR -152 207 14 7 870 295 156 0 0 chr4 37473187 37473232 -118156888 + RMER4A LTR ERVK 169 213 -253 7 870 1668 187 6 12 chr4 37473232 37473557 -118156563 - L1_Mm LINE L1 -738 5145 4823 7 870 711 188 12 30 chr4 37473553 37473718 -118156402 + L1_Mur2 LINE L1 5151 5312 -565 7 870 1167 181 0 5 chr4 37473727 37473949 -118156171 - L1_Mus4 LINE L1 -20 6616 6396 7 870 6520 104 64 26 chr4 37473949 37475233 -118154887 + L1_Mus4 LINE L1 5278 6626 -10 7 870 1067 230 7 99 chr4 37475254 37475548 -118154572 + RMER4A LTR ERVK 196 462 -4 7 870 328 294 67 0 chr4 37476731 37476850 -118153270 - Lx9 LINE L1 -203 7441 7315 7 870 475 288 43 0 chr4 37476860 37476999 -118153121 - Lx5 LINE L1 -132 7328 7184 7 870 435 305 7 14 chr4 37477121 37477264 -118152856 - Lx5 LINE L1 -316 7144 7003 7 870 1172 278 51 37 chr4 37477259 37477825 -118152295 - Lx5 LINE L1 -574 6886 6051 7 870 727 261 84 39 chr4 37477825 37478193 -118151927 + RLTR11B LTR ERVK 34 414 -27 7 870 1672 240 43 43 chr4 37478220 37478999 -118151121 - Lx5 LINE L1 -1418 6042 5234 7 870 577 94 36 36 chr4 37479020 37479186 -118150934 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 7 870 261 0 0 0 chr4 37479308 37479337 -118150783 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 870 324 0 0 0 chr4 37479337 37479372 -118150748 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 870 259 333 117 23 chr4 37479381 37479731 -118150389 + L1_Rod LINE L1 1530 1912 -3935 7 870 815 290 104 37 chr4 37479918 37480294 -118149826 - MTD LTR MaLR -14 405 5 7 870 1275 309 38 25 chr4 37480545 37481235 -118148885 + L1_Mur3 LINE L1 1937 2635 -3245 7 870 25 0 0 0 chr4 37481243 37481268 -118148852 + AT_rich Low_complexity Low_complexity 1 25 0 7 870 1595 27 0 0 chr4 37481275 37481460 -118148660 - B2_Mm1t SINE B2 -7 186 2 7 870 241 328 8 17 chr4 37481650 37481768 -118148352 + L1_Mur3 LINE L1 2681 2797 -3083 7 870 339 44 0 0 chr4 37481775 37481820 -118148300 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 870 2633 253 93 32 chr4 37482260 37482995 -118147125 + RMER1B Other Other 229 944 -122 7 870 207 0 0 0 chr4 37482995 37483018 -118147102 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 870 2633 226 110 13 chr4 37483018 37483128 -118146992 + RMER1B Other Other 945 1052 -14 7 870 301 215 108 0 chr4 37483289 37483382 -118146738 + HAL1-3A_ME LINE L1 1946 2048 -810 7 870 365 16 31 31 chr4 37483527 37483591 -118146529 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 870 1128 68 0 14 chr4 37483591 37483728 -118146392 - B1_Mus1 SINE Alu -9 139 3 7 870 276 102 0 0 chr4 37483826 37483875 -118146245 + (A)n Simple_repeat Simple_repeat 1 49 0 7 870 3968 112 7 0 chr4 37485414 37486015 -118144105 - L1_Mur1 LINE L1 -1556 4330 3726 7 108 6669 162 8 11 chr4 37486039 37487796 -118142324 - Lx LINE L1 -5 6649 4895 7 871 4616 209 110 26 chr4 37487778 37489019 -118141101 + Lx3B LINE L1 5651 6996 -4 7 871 26 0 0 0 chr4 37489019 37489045 -118141075 + AT_rich Low_complexity Low_complexity 1 26 0 7 871 565 275 56 25 chr4 37490137 37490335 -118139785 + B3 SINE B2 1 204 -12 7 871 2114 71 123 0 chr4 37490530 37490840 -118139280 - L1_Mus2 LINE L1 -1 6565 6218 7 871 861 54 0 26 chr4 37490840 37490948 -118139172 + L1_Mus2 LINE L1 6111 6216 -350 7 871 192 77 0 0 chr4 37491868 37491894 -118138226 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 871 288 53 0 0 chr4 37492561 37492599 -118137521 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 871 350 83 33 0 chr4 37492850 37492910 -118137210 - Lx2A LINE L1 -3 7005 6944 7 871 21 0 0 0 chr4 37493069 37493090 -118137030 + AT_rich Low_complexity Low_complexity 1 21 0 7 871 541 307 31 0 chr4 37493490 37493653 -118136467 - B3 SINE B2 -1 215 48 7 871 2260 198 2 7 chr4 37493723 37494140 -118135980 - Lx4A LINE L1 -1 7057 6643 7 871 656 122 0 9 chr4 37494249 37494365 -118135755 + Lx3A LINE L1 6863 6977 -4 7 871 1579 275 68 49 chr4 37494545 37495706 -118134414 + MYSERV-int LTR ERVK 3890 5123 -1427 7 871 303 316 83 55 chr4 37495712 37495893 -118134227 + RMER4A LTR ERVK 251 436 -30 7 871 2534 226 103 12 chr4 37495904 37496252 -118133868 + MYSERV6-int LTR ERVK 7767 8158 -801 7 871 594 28 0 0 chr4 37496252 37496324 -118133796 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 7 871 2534 243 106 29 chr4 37496324 37497024 -118133096 + MYSERV6-int LTR ERVK 8159 8613 -346 7 871 1087 86 0 0 chr4 37497024 37497164 -118132956 - B1_Mus1 SINE Alu -6 142 3 7 871 1399 269 112 57 chr4 37497164 37497246 -118132874 + MYSERV16_I-int LTR ERVK 2246 2326 0 7 871 841 283 32 40 chr4 37497246 37497592 -118132528 + RLTR15 LTR ERVK 1 343 -16 7 871 21 0 0 0 chr4 37497597 37497618 -118132502 + AT_rich Low_complexity Low_complexity 1 21 0 7 871 602 289 79 0 chr4 37498464 37498654 -118131466 - Lx9 LINE L1 -215 7429 7225 7 871 374 69 17 0 chr4 37498725 37498783 -118131337 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 871 264 77 0 0 chr4 37498791 37498830 -118131290 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 871 591 350 63 30 chr4 37499022 37499355 -118130765 + MLT2D LTR ERVL 16 359 -55 7 871 566 53 31 10 chr4 37499385 37499481 -118130639 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 7 871 2227 22 51 0 chr4 37499724 37500000 -118130120 - MTA_Mm LTR MaLR 0 396 107 7 871 918 9 0 0 chr4 37500000 37500106 -118130014 - MTA_Mm LTR MaLR -290 106 1 1 871 258 32 0 0 chr4 37500293 37500324 -118129796 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 871 555 223 32 40 chr4 37500326 37500452 -118129668 - B1_Mur3 SINE Alu -15 134 10 3 871 384 59 0 0 chr4 37500467 37500518 -118129602 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 871 274 308 5 5 chr4 37501004 37501099 -118129021 + RSINE1 SINE B4 27 123 -42 5 871 661 271 30 18 chr4 37501222 37501441 -118128679 - ORR1D1 LTR MaLR -149 221 1 6 871 290 47 0 44 chr4 37503243 37503288 -118126832 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 7 871 803 67 22 7 chr4 37504663 37504799 -118125321 - L1_Mus3 LINE L1 -2 6636 6499 8 871 192 222 37 12 chr4 37504937 37505019 -118125101 + CT-rich Low_complexity Low_complexity 2 85 0 9 871 541 128 20 0 chr4 37506441 37506543 -118123577 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 871 938 262 88 59 chr4 37506688 37506906 -118123214 - ORR1C2 LTR MaLR 0 384 166 1 871 252 0 0 0 chr4 37506906 37506934 -118123186 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 871 938 262 88 59 chr4 37506934 37507088 -118123032 - ORR1C2 LTR MaLR -219 165 1 1 871 231 167 47 55 chr4 37508436 37508563 -118121557 + (TATAA)n Simple_repeat Simple_repeat 2 127 0 1 871 4897 95 8 4 chr4 37508782 37509804 -118120316 + L1VL4 LINE L1 267 1293 -2266 1 871 522 0 0 0 chr4 37509818 37509876 -118120244 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 871 25 31 0 0 chr4 37510593 37510625 -118119495 + AT_rich Low_complexity Low_complexity 1 32 0 1 871 390 42 0 0 chr4 37512197 37512245 -118117875 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 871 881 307 52 29 chr4 37512445 37512831 -118117289 + RMER5 LTR ERV1 136 530 -4 1 871 913 359 27 19 chr4 37512871 37513383 -118116737 - Lx8 LINE L1 -205 7268 6753 1 871 25 51 0 0 chr4 37514071 37514110 -118116010 + AT_rich Low_complexity Low_complexity 1 39 0 2 871 279 0 0 0 chr4 37514392 37514423 -118115697 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 871 4498 217 9 3 chr4 37514630 37515551 -118114569 - Lx4A LINE L1 -1 7057 6132 2 871 1535 158 24 0 chr4 37515551 37515805 -118114315 - L1_Mur2 LINE L1 -6018 694 435 2 871 2218 97 51 51 chr4 37515969 37516339 -118113781 + L1_Mus3 LINE L1 6265 6634 -4 2 871 21 0 0 0 chr4 37517182 37517203 -118112917 + AT_rich Low_complexity Low_complexity 1 21 0 2 871 2080 105 6 6 chr4 37517248 37517564 -118112556 - L1_Mus2 LINE L1 0 6566 6251 2 871 3265 248 78 18 chr4 37517906 37518828 -118111292 - Lx7 LINE L1 -329 7367 6391 2 871 180 0 0 0 chr4 37518856 37518876 -118111244 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 871 1270 202 50 61 chr4 37518950 37519313 -118110807 - RMER6C LTR ERVK 0 690 332 2 871 336 227 45 29 chr4 37519327 37519449 -118110671 - B1_Mus1 SINE Alu -21 128 7 3 871 514 216 8 121 chr4 37519425 37519557 -118110563 - MT2B LTR ERVL -314 287 171 3 871 231 179 0 0 chr4 37519558 37519597 -118110523 - RMER6C LTR ERVK -681 39 1 2 871 7673 204 48 39 chr4 37519604 37521633 -118108487 - L1_Mur3 LINE L1 -181 5699 3661 3 871 519 17 0 0 chr4 37521633 37521693 -118108427 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 871 7673 204 48 39 chr4 37521693 37521750 -118108370 - L1_Mur3 LINE L1 -2220 3660 3594 3 871 380 239 124 11 chr4 37521751 37521929 -118108191 - L1_Mur3 LINE L1 -2453 3427 3230 3 871 6979 106 5 1 chr4 37521911 37523100 -118107020 - L1_Mus2 LINE L1 -2 6564 5372 3 871 7385 42 7 1 chr4 37523098 37524134 -118105986 + L1Md_F2 LINE L1 5433 6474 -108 3 871 24313 120 5 34 chr4 37524130 37525154 -118104966 - L1_Mus2 LINE L1 -684 5199 4286 3 871 198 0 0 0 chr4 37525154 37525176 -118104944 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 871 1097 83 7 0 chr4 37525176 37525320 -118104800 - B1_Mm SINE Alu -2 145 1 3 871 24313 119 5 33 chr4 37525320 37528414 -118101706 - L1_Mus2 LINE L1 -1598 4285 1197 3 871 464 294 56 60 chr4 37528434 37528666 -118101454 - L1VL1 LINE L1 -6019 403 173 3 871 729 253 35 111 chr4 37528683 37528794 -118101326 - L1_Mur3 LINE L1 -2615 3265 3178 3 871 502 204 211 0 chr4 37528794 37528941 -118101179 - B2_Mm2 SINE B2 -14 181 4 3 871 729 253 35 111 chr4 37528941 37529260 -118100860 - L1_Mur3 LINE L1 -2703 3177 2868 3 871 325 273 91 0 chr4 37529752 37529873 -118100247 - Lx7 LINE L1 -361 7335 7204 4 871 25 31 0 0 chr4 37529873 37529905 -118100215 + AT_rich Low_complexity Low_complexity 1 32 0 4 871 22 0 0 0 chr4 37530284 37530306 -118099814 + AT_rich Low_complexity Low_complexity 1 22 0 4 871 249 353 42 8 chr4 37530590 37530710 -118099410 + L2a LINE L2 3299 3422 -4 4 871 851 364 71 30 chr4 37531038 37531571 -118098549 - Lx8 LINE L1 -2 7471 6917 4 871 264 259 57 62 chr4 37532031 37532208 -118097912 + L1MA9 LINE L1 5795 5970 -321 4 871 7962 55 1 1 chr4 37532280 37533731 -118096389 - L1Md_F2 LINE L1 0 6582 5133 4 871 28 48 0 0 chr4 37533929 37533971 -118096149 + AT_rich Low_complexity Low_complexity 1 42 0 4 871 1114 242 83 35 chr4 37534034 37534346 -118095774 + ORR1D2 LTR MaLR 9 336 -34 4 871 180 0 0 0 chr4 37534346 37534366 -118095754 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 871 1114 242 83 35 chr4 37534366 37534391 -118095729 + ORR1D2 LTR MaLR 337 361 -9 4 871 445 328 114 35 chr4 37534404 37534894 -118095226 - Lx8 LINE L1 -84 7389 6846 5 871 231 114 0 0 chr4 37535203 37535238 -118094882 + (TTTC)n Simple_repeat Simple_repeat 1 35 0 5 871 423 0 0 0 chr4 37535338 37535385 -118094735 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 871 23 0 0 0 chr4 37535399 37535422 -118094698 + AT_rich Low_complexity Low_complexity 1 23 0 5 871 600 244 97 22 chr4 37535694 37535920 -118094200 + L1MA9 LINE L1 6044 6286 -26 4 871 7355 77 14 0 chr4 37536514 37537161 -118092959 - L1_Mus1 LINE L1 0 6567 5954 5 871 603 0 0 0 chr4 37537161 37537228 -118092892 + (TTTTC)n Simple_repeat Simple_repeat 4 70 0 5 871 7355 87 11 1 chr4 37537228 37537753 -118092367 - L1_Mus1 LINE L1 -614 5953 5414 5 871 322 311 52 7 chr4 37538036 37538172 -118091948 + Lx8 LINE L1 6222 6363 -1110 5 871 244 346 30 0 chr4 37538356 37538457 -118091663 + L1_Mur3 LINE L1 583 686 -7042 5 871 577 389 40 9 chr4 37538426 37538875 -118091245 + L1_Mur3 LINE L1 398 860 -6852 5 871 252 0 0 0 chr4 37538879 37538907 -118091213 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 871 7121 82 18 2 chr4 37538907 37539517 -118090603 - L1_Mus1 LINE L1 -2 6565 5954 6 871 558 0 0 0 chr4 37539517 37539579 -118090541 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 6 871 7121 90 13 2 chr4 37539579 37540104 -118090016 - L1_Mus1 LINE L1 -614 5953 5414 6 871 322 311 52 7 chr4 37540387 37540523 -118089597 + Lx8 LINE L1 6222 6363 -1110 6 871 244 346 30 0 chr4 37540707 37540808 -118089312 + L1_Mur3 LINE L1 583 686 -7042 5 871 577 389 40 9 chr4 37540777 37541226 -118088894 + L1_Mur3 LINE L1 414 876 -6852 5 871 252 0 0 0 chr4 37541230 37541258 -118088862 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 871 3598 89 0 6 chr4 37541258 37541754 -118088366 - L1Md_F2 LINE L1 -15 6567 6075 6 871 2303 79 3 3 chr4 37541775 37542093 -118088027 - L1_Mm LINE L1 -579 5304 4987 6 871 35335 73 3 14 chr4 37542089 37548235 -118081885 - L1Md_F2 LINE L1 -2 6580 510 6 871 10731 96 14 87 chr4 37548233 37548618 -118081502 - L1_Mm LINE L1 -884 4999 4614 6 871 405 0 0 0 chr4 37548618 37548663 -118081457 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 6 871 1067 68 81 0 chr4 37548663 37548811 -118081309 - B2_Mm1a SINE B2 -33 160 1 6 871 10731 96 14 87 chr4 37548811 37550154 -118079966 - L1_Mm LINE L1 -1270 4613 3260 6 871 34439 64 11 3 chr4 37550148 37554631 -118075489 - L1Md_F2 LINE L1 0 6582 2047 6 871 2111 38 114 0 chr4 37554631 37554893 -118075227 + RLTR10B LTR ERVK 1 292 0 7 871 34439 148 38 15 chr4 37554893 37556886 -118073234 - L1Md_F2 LINE L1 -3837 2046 31 6 871 2336 241 41 24 chr4 37556888 37558016 -118072104 + L1_Mur3 LINE L1 868 2016 -3864 5 871 37662 9 8 1 chr4 37558022 37563969 -118066151 + L1Md_A LINE L1 1 5586 -297 7 871 9026 2 0 0 chr4 37563969 37564965 -118065155 + L1Md_A LINE L1 5587 6582 0 7 871 1160 231 24 12 chr4 37564971 37565304 -118064816 + L1_Mur3 LINE L1 2006 2342 -3538 5 871 4648 246 63 60 chr4 37565348 37565513 -118064607 + L1_Mur3 LINE L1 1701 1865 -4015 7 871 1065 88 0 39 chr4 37565513 37565667 -118064453 - B1_Mus1 SINE Alu 0 148 1 7 871 4648 246 63 60 chr4 37565667 37566785 -118063335 + L1_Mur3 LINE L1 1866 3011 -2869 7 871 3079 42 42 0 chr4 37566785 37567165 -118062955 - MTA_Mm LTR MaLR 0 396 1 7 871 4648 246 63 60 chr4 37567165 37567370 -118062750 + L1_Mur3 LINE L1 3012 3211 -2669 7 871 249 33 0 0 chr4 37567370 37567400 -118062720 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 871 4648 246 63 60 chr4 37567400 37567909 -118062211 + L1_Mur3 LINE L1 3212 3707 -2173 7 871 3683 106 58 0 chr4 37567942 37568498 -118061622 - L1_Mus3 LINE L1 0 6638 6051 7 871 14757 48 7 20 chr4 37568498 37571578 -118058542 - L1_Mus2 LINE L1 -473 6093 580 7 871 2057 121 55 5 chr4 37571614 37571629 -118058491 - MusHAL1 LINE L1 -1847 865 852 7 871 1104 62 7 0 chr4 37571629 37571775 -118058345 - B1_Mus1 SINE Alu 0 148 2 7 871 2057 121 55 5 chr4 37571775 37572140 -118057980 - MusHAL1 LINE L1 -1861 851 466 7 871 2395 158 45 0 chr4 37572668 37573087 -118057033 + Lx2 LINE L1 6559 6996 -1 8 871 199 350 50 0 chr4 37573372 37573452 -118056668 - L4 LINE RTE -368 1661 1578 8 871 7273 117 21 9 chr4 37574508 37576439 -118053681 + L1VL4 LINE L1 50 2004 -1555 8 871 1266 272 117 109 chr4 37576453 37577037 -118053083 - RMER17B LTR ERVK -9 899 364 8 871 906 80 0 0 chr4 37577037 37577174 -118052946 + (GA)n Simple_repeat Simple_repeat 2 138 0 8 871 1266 236 133 44 chr4 37577174 37577563 -118052557 - RMER17B LTR ERVK -527 431 1 8 871 10146 169 20 28 chr4 37577563 37579665 -118050455 + L1_Mur1 LINE L1 2361 4446 -1440 8 871 7527 88 1 5 chr4 37579665 37580814 -118049306 - L1Md_F2 LINE L1 0 6582 5439 8 871 791 187 11 6 chr4 37580786 37580963 -118049157 - L1Md_F2 LINE L1 -3787 2096 1919 8 871 6372 194 9 45 chr4 37580961 37581786 -118048334 + L1_Mus4 LINE L1 4522 5295 -588 8 871 1056 75 0 0 chr4 37581786 37581932 -118048188 + L1Md_F2 LINE L1 6425 6570 -12 8 871 6994 135 5 14 chr4 37581932 37583268 -118046852 + L1_Mus4 LINE L1 5296 6630 -6 8 871 261 0 0 0 chr4 37583662 37583691 -118046429 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 8 871 28 79 0 0 chr4 37583877 37583940 -118046180 + AT_rich Low_complexity Low_complexity 1 63 0 9 871 1466 296 63 20 chr4 37584010 37584516 -118045604 + Lx6 LINE L1 6933 7460 0 9 871 470 70 14 0 chr4 37584559 37584630 -118045490 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 871 1923 167 15 3 chr4 37584633 37584976 -118045144 - Lx3C LINE L1 -963 6013 5667 9 871 267 31 0 0 chr4 37584983 37585015 -118045105 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 871 199 132 18 36 chr4 37585026 37585081 -118045039 + T-rich Low_complexity Low_complexity 2 55 0 9 871 371 352 56 0 chr4 37585255 37585380 -118044740 + B3A SINE B2 2 133 -65 9 871 438 20 0 0 chr4 37585410 37585461 -118044659 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 871 21 0 0 0 chr4 37585587 37585608 -118044512 + AT_rich Low_complexity Low_complexity 1 21 0 9 871 1872 350 141 30 chr4 37585645 37586147 -118043973 + MTE-int LTR MaLR 21 575 -1005 9 871 2759 81 59 5 chr4 37586147 37586534 -118043586 + L1Md_F2 LINE L1 6173 6580 -2 1 871 1872 350 141 30 chr4 37586534 37587387 -118042733 + MTE-int LTR MaLR 576 1527 -53 9 871 235 358 59 43 chr4 37587387 37587574 -118042546 + ORR1E LTR MaLR 1 190 -169 1 871 24 77 0 0 chr4 37588216 37588268 -118041852 + AT_rich Low_complexity Low_complexity 1 52 0 1 871 544 149 0 0 chr4 37588343 37588437 -118041683 - L1_Mur1 LINE L1 -810 5076 4983 1 871 2501 138 35 0 chr4 37588431 37588831 -118041289 + Lx LINE L1 6151 6564 -90 1 871 20247 156 24 10 chr4 37588816 37593417 -118036703 + L1_Mus3 LINE L1 1970 6621 -17 1 871 468 0 0 0 chr4 37593417 37593469 -118036651 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1 871 391 163 54 11 chr4 37593472 37593565 -118036555 + Lx LINE L1 6555 6651 -3 1 871 458 361 0 0 chr4 37593576 37593709 -118036411 + RSINE1 SINE B4 21 153 -12 1 871 215 320 10 10 chr4 37593717 37593821 -118036299 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1 871 206 243 0 0 chr4 37594314 37594351 -118035769 - L3 LINE CR1 -21 4468 4432 1 871 393 22 0 0 chr4 37594580 37594626 -118035494 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 871 207 0 0 0 chr4 37594626 37594649 -118035471 + (CG)n Simple_repeat Simple_repeat 1 23 0 1 871 351 0 0 0 chr4 37594649 37594687 -118035433 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 871 324 385 82 20 chr4 37594696 37594842 -118035278 - B3A SINE B2 -43 155 1 1 871 21 36 0 0 chr4 37594846 37594874 -118035246 + AT_rich Low_complexity Low_complexity 1 28 0 1 871 24 0 0 0 chr4 37595112 37595136 -118034984 + AT_rich Low_complexity Low_complexity 1 24 0 1 871 297 263 0 0 chr4 37595255 37595354 -118034766 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 871 3198 72 41 84 chr4 37595564 37596076 -118034044 + L1Md_F2 LINE L1 6093 6582 0 1 871 2265 222 6 33 chr4 37596099 37596588 -118033532 - Lx4A LINE L1 -328 6730 6255 1 871 266 0 0 29 chr4 37596608 37596643 -118033477 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 871 371 173 13 39 chr4 37597261 37597339 -118032781 - Lx3_Mus LINE L1 -365 6644 6569 1 871 13779 132 74 9 chr4 37597323 37602381 -118027739 - Lx3_Mus LINE L1 -604 6405 3 1 871 386 132 0 13 chr4 37602988 37603065 -118027055 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 871 365 209 0 0 chr4 37603309 37603376 -118026744 - B1F1 SINE Alu -6 143 77 1 871 24 32 0 0 chr4 37604031 37604062 -118026058 + AT_rich Low_complexity Low_complexity 1 31 0 1 871 1179 170 10 12 chr4 37604580 37604810 -118025310 + ORR1A2 LTR MaLR 3 305 -22 1 871 15436 100 14 53 chr4 37604852 37608211 -118021909 + L1Md_F LINE L1 366 3593 -2290 1 871 7032 90 12 4 chr4 37608237 37609211 -118020909 + L1Md_F2 LINE L1 5587 6568 -14 1 871 22 0 0 0 chr4 37609224 37609246 -118020874 + AT_rich Low_complexity Low_complexity 1 22 0 1 871 21 0 0 0 chr4 37609287 37609308 -118020812 + AT_rich Low_complexity Low_complexity 1 21 0 1 871 247 207 0 17 chr4 37609380 37609439 -118020681 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 1 871 696 311 21 39 chr4 37609484 37609768 -118020352 + Lx9 LINE L1 6897 7175 -469 1 871 1294 247 102 6 chr4 37609768 37610102 -118020018 - RMER19B LTR ERVK -242 660 295 1 871 237 33 0 0 chr4 37610271 37610301 -118019819 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 871 240 200 0 0 chr4 37610324 37610379 -118019741 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 871 303 260 125 0 chr4 37610398 37610502 -118019618 + Lx9 LINE L1 6367 6483 -1161 1 871 458 306 26 62 chr4 37610980 37611175 -118018945 + Lx8 LINE L1 6307 6494 -979 1 871 180 111 0 0 chr4 37611177 37611204 -118018916 + (T)n Simple_repeat Simple_repeat 1 27 0 1 871 23 0 0 0 chr4 37611204 37611227 -118018893 + AT_rich Low_complexity Low_complexity 1 23 0 1 871 390 386 62 43 chr4 37612027 37612238 -118017882 - B4 SINE B4 -75 217 3 1 871 627 196 51 63 chr4 37612243 37612401 -118017719 + B2_Mm2 SINE B2 6 161 -34 1 871 425 18 0 34 chr4 37612401 37612460 -118017660 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 1 871 21 57 0 0 chr4 37612634 37612669 -118017451 + AT_rich Low_complexity Low_complexity 1 35 0 1 871 23 33 0 0 chr4 37612834 37612864 -118017256 + AT_rich Low_complexity Low_complexity 1 30 0 1 871 288 396 47 31 chr4 37612992 37613250 -118016870 + MER74C LTR ERVL 184 445 -15 1 871 459 314 43 14 chr4 37613717 37613856 -118016264 + ORR1E LTR MaLR 6 148 -211 1 871 224 167 37 0 chr4 37613982 37614036 -118016084 + CT-rich Low_complexity Low_complexity 1 56 0 1 871 6046 136 21 19 chr4 37614036 37615066 -118015054 - Lx2A1 LINE L1 -2 7006 5975 1 871 306 0 0 0 chr4 37615229 37615263 -118014857 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 871 429 20 0 0 chr4 37615468 37615518 -118014602 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 871 334 280 33 13 chr4 37615756 37615908 -118014212 + (TA)n Simple_repeat Simple_repeat 1 155 0 1 871 774 56 0 0 chr4 37616143 37616251 -118013869 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 871 399 21 0 0 chr4 37616251 37616298 -118013822 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 871 446 329 56 25 chr4 37616301 37616463 -118013657 - B3A SINE B2 -30 168 2 1 871 217 70 70 0 chr4 37617317 37617360 -118012760 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 1 871 283 236 40 40 chr4 37617363 37617438 -118012682 - ID4_ SINE ID -3 80 6 1 872 5121 66 40 3 chr4 37618101 37618782 -118011338 + L1Md_F2 LINE L1 5876 6581 -1 1 872 2321 81 9 6 chr4 37618857 37619181 -118010939 - L1Md_F2 LINE L1 -2 6580 6256 1 872 236 181 82 14 chr4 37619305 37619378 -118010742 + Lx9 LINE L1 7389 7466 -178 1 872 1489 58 24 10 chr4 37620182 37620390 -118009730 - L1Md_F3 LINE L1 -1 6583 6373 1 872 1464 29 6 0 chr4 37620390 37620562 -118009558 + L1Md_F3 LINE L1 6164 6336 -248 1 872 2483 169 40 14 chr4 37621378 37621877 -118008243 + Lx4B LINE L1 5601 6112 -946 1 872 736 247 52 0 chr4 37621940 37622114 -118008006 + Lx9 LINE L1 7124 7306 -338 1 872 402 21 0 0 chr4 37622119 37622166 -118007954 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 872 2237 217 55 59 chr4 37622180 37622900 -118007220 + RLTR25B LTR ERVK 1 774 -254 1 872 222 37 0 0 chr4 37622908 37622935 -118007185 + (T)n Simple_repeat Simple_repeat 1 27 0 1 872 778 167 14 0 chr4 37623520 37623658 -118006462 - RLTR25B LTR ERVK -275 753 614 1 872 742 252 104 87 chr4 37623901 37624194 -118005926 + RLTR25B LTR ERVK 766 1001 -102 1 872 310 296 143 0 chr4 37624386 37624484 -118005636 - RSINE1 SINE B4 -44 121 10 1 872 1860 286 49 36 chr4 37625206 37625619 -118004501 + L1_Mur3 LINE L1 577 1014 -6714 1 872 261 0 0 0 chr4 37625619 37625648 -118004472 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 872 1860 286 49 36 chr4 37625648 37625885 -118004235 + L1_Mur3 LINE L1 1015 1244 -6484 1 872 3162 176 33 25 chr4 37625885 37626496 -118003624 + Lx3C LINE L1 6343 6958 -18 1 872 576 0 0 0 chr4 37626496 37626560 -118003560 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 872 1860 228 233 42 chr4 37626560 37626778 -118003342 + L1_Mur3 LINE L1 1245 1502 -4378 1 872 1410 56 0 0 chr4 37626778 37626958 -118003162 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 872 1211 228 233 42 chr4 37626958 37627610 -118002510 + L1_Mur3 LINE L1 1503 2295 -3585 1 872 3047 217 4 7 chr4 37627963 37628651 -118001469 + L1_Mur3 LINE L1 2328 3013 -2867 1 872 288 176 134 0 chr4 37628653 37628719 -118001401 + Lx7 LINE L1 6801 6877 -819 1 872 741 208 31 92 chr4 37628719 37628947 -118001173 + Lx7 LINE L1 7479 7692 -4 1 872 2793 208 77 43 chr4 37628949 37629811 -118000309 + L1_Mur3 LINE L1 2992 3882 -1998 1 872 1584 226 69 14 chr4 37629820 37630313 -117999807 - L1_Mur2 LINE L1 -2655 3222 2703 1 872 29345 103 16 16 chr4 37630325 37634229 -117995891 - L1Md_F2 LINE L1 -19 6563 2661 1 872 7713 53 14 5 chr4 37634229 37635216 -117994904 + L1Md_F3 LINE L1 5588 6583 -1 1 872 29345 124 34 19 chr4 37635216 37637467 -117992653 - L1Md_F2 LINE L1 -3223 2660 373 1 872 575 252 38 6 chr4 37637467 37637627 -117992493 - L1_Mur2 LINE L1 -3157 2723 2559 1 872 21 0 0 0 chr4 37638679 37638700 -117991420 + AT_rich Low_complexity Low_complexity 1 21 0 1 872 21 0 0 0 chr4 37639423 37639444 -117990676 + AT_rich Low_complexity Low_complexity 1 21 0 1 872 1115 82 0 0 chr4 37639555 37639701 -117990419 + B1_Mm SINE Alu 2 147 0 1 872 21 0 0 0 chr4 37639701 37639722 -117990398 + AT_rich Low_complexity Low_complexity 1 21 0 1 872 234 0 0 0 chr4 37639761 37639787 -117990333 + (T)n Simple_repeat Simple_repeat 1 26 0 1 872 360 0 0 0 chr4 37639825 37639865 -117990255 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 872 311 362 103 26 chr4 37639943 37640099 -117990021 - B4A SINE B4 -62 230 63 1 872 506 372 11 0 chr4 37640227 37640418 -117989702 + B3 SINE B2 8 200 -16 1 872 629 47 0 12 chr4 37640418 37640504 -117989616 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 1 872 212 59 29 0 chr4 37640571 37640605 -117989515 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 872 949 123 7 0 chr4 37640605 37640742 -117989378 - B1_Mus2 SINE Alu -8 139 2 1 872 36 0 0 0 chr4 37641749 37641785 -117988335 + AT_rich Low_complexity Low_complexity 1 36 0 1 872 288 0 0 0 chr4 37642113 37642145 -117987975 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 872 573 360 31 58 chr4 37642182 37642474 -117987646 - B4 SINE B4 -1 291 8 1 872 4370 202 42 13 chr4 37642535 37643466 -117986654 + RMER17B LTR ERVK 1 958 0 1 872 6729 178 18 7 chr4 37643896 37645577 -117984543 + L1VL4 LINE L1 479 2175 -1384 1 872 10956 194 18 30 chr4 37645571 37645764 -117984356 + Lx2 LINE L1 3511 3708 -2169 1 872 1177 54 7 0 chr4 37645764 37645911 -117984209 + B1_Mus1 SINE Alu 1 148 0 1 872 10956 183 14 24 chr4 37645911 37648336 -117981784 + Lx2 LINE L1 3709 6105 -892 1 872 10354 129 5 4 chr4 37648335 37650057 -117980063 + MusHAL1 LINE L1 369 2092 -620 1 872 217 0 61 0 chr4 37650057 37650090 -117980030 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 872 336 125 0 0 chr4 37650091 37650147 -117979973 + MusHAL1 LINE L1 2202 2257 -455 1 872 3640 64 0 0 chr4 37650143 37650628 -117979492 - L1Md_F3 LINE L1 -3539 2344 1860 1 872 24212 56 31 0 chr4 37650630 37653769 -117976351 + L1Md_F3 LINE L1 2352 5586 -297 1 872 7914 47 1 4 chr4 37653770 37654756 -117975364 + L1Md_F3 LINE L1 5588 6570 -14 1 872 13664 136 52 19 chr4 37654756 37657509 -117972611 + L1_Mus2 LINE L1 3449 6352 -214 1 872 219 103 0 0 chr4 37657509 37657548 -117972572 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 1 872 4983 126 75 64 chr4 37657548 37657802 -117972318 + L1_Mus2 LINE L1 6353 6566 0 1 872 28 0 0 0 chr4 37657847 37657875 -117972245 + AT_rich Low_complexity Low_complexity 1 28 0 1 872 28 71 0 0 chr4 37658514 37658570 -117971550 + AT_rich Low_complexity Low_complexity 1 56 0 1 872 209 57 29 0 chr4 37658952 37658987 -117971133 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2 872 480 266 217 0 chr4 37659569 37659772 -117970348 + L1MB3 LINE L1 5874 6120 -63 2 872 2751 108 12 9 chr4 37659774 37660194 -117969926 + BGLII LTR ERVK 1 421 0 2 872 25 41 0 20 chr4 37660433 37660463 -117969657 + AT_rich Low_complexity Low_complexity 1 30 0 2 872 1708 167 16 7 chr4 37660463 37660771 -117969349 - Lx3A LINE L1 -1 6980 6670 2 872 25 41 0 20 chr4 37660771 37660790 -117969330 + AT_rich Low_complexity Low_complexity 1 19 0 2 872 804 94 8 8 chr4 37660803 37660932 -117969188 - Lx3A LINE L1 -1019 5962 5834 2 872 20524 126 32 38 chr4 37660931 37665460 -117964660 - Lx3A LINE L1 -317 6664 2160 2 872 652 262 0 6 chr4 37665457 37665622 -117964498 - Lx3A LINE L1 -6623 361 198 2 872 283 200 200 31 chr4 37666062 37666166 -117963954 + RMER17C LTR ERVK 91 219 -191 2 872 453 19 0 0 chr4 37666166 37666220 -117963900 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 872 283 200 200 31 chr4 37666220 37666275 -117963845 + RMER17C LTR ERVK 220 277 -133 2 872 186 128 0 0 chr4 37666442 37666481 -117963639 + (CAAAT)n Simple_repeat Simple_repeat 2 40 0 2 872 371 386 8 0 chr4 37668914 37669046 -117961074 + ORR1E LTR MaLR 6 138 -221 2 872 562 360 103 47 chr4 37669596 37670022 -117960098 + MTE-int LTR MaLR 1 450 -1130 2 872 228 135 0 0 chr4 37670388 37670425 -117959695 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2 872 243 376 39 39 chr4 37670428 37670608 -117959512 + MTE-int LTR MaLR 818 997 -583 2 872 327 25 0 0 chr4 37670699 37670739 -117959381 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 872 5851 35 1 0 chr4 37670761 37671466 -117958654 + L1Md_T LINE L1 5877 6582 0 2 872 843 321 38 40 chr4 37671466 37671809 -117958311 - MTC LTR MaLR -12 409 15 2 872 334 432 63 6 chr4 37671821 37672184 -117957936 + MTE-int LTR MaLR 1042 1425 -155 2 872 626 144 15 8 chr4 37672225 37672358 -117957762 - L1_Mus3 LINE L1 0 6638 6505 2 872 2056 112 23 0 chr4 37672358 37672661 -117957459 + L1_Mus3 LINE L1 6158 6467 -99 2 872 2217 52 10 0 chr4 37673101 37673389 -117956731 - L1Md_F2 LINE L1 0 6582 6292 2 872 194 375 0 43 chr4 37673403 37673495 -117956625 - MIR SINE MIR -122 140 53 2 872 390 21 0 0 chr4 37673495 37673542 -117956578 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 872 194 105 26 0 chr4 37673562 37673600 -117956520 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 872 23 0 0 0 chr4 37673747 37673770 -117956350 + AT_rich Low_complexity Low_complexity 1 23 0 2 872 857 271 117 0 chr4 37674545 37674759 -117955361 + LFSINE_Vert SINE SINE 1 239 -220 2 872 234 350 12 0 chr4 37675738 37675818 -117954302 + ID4_ SINE ID 2 82 -1 2 872 405 0 0 0 chr4 37675979 37676024 -117954096 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 872 5141 151 35 9 chr4 37676029 37677234 -117952886 + Lx LINE L1 4859 6082 -572 2 872 207 179 0 0 chr4 37677564 37677603 -117952517 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 872 485 312 0 0 chr4 37677821 37677965 -117952155 + Lx5 LINE L1 554 697 -6389 2 872 1607 219 12 27 chr4 37677968 37678305 -117951815 + Lx4B LINE L1 6142 6473 -585 2 872 323 271 52 0 chr4 37678305 37678401 -117951719 - RLTR25A LTR ERVK 0 1028 928 2 872 3371 236 24 31 chr4 37678406 37679201 -117950919 - RLTR25A LTR ERVK -314 789 1 2 872 2645 210 37 18 chr4 37679201 37679769 -117950351 + Lx4B LINE L1 6468 7046 -12 2 872 822 130 0 0 chr4 37679779 37679910 -117950210 + (GAAAA)n Simple_repeat Simple_repeat 4 134 0 2 872 25 0 0 0 chr4 37680020 37680045 -117950075 + AT_rich Low_complexity Low_complexity 1 25 0 2 872 352 292 5 10 chr4 37680496 37680656 -117949464 + Lx5 LINE L1 916 1075 -6653 2 872 5304 206 42 22 chr4 37680659 37682080 -117948040 + Lx5 LINE L1 2750 4199 -1678 2 872 5460 232 12 17 chr4 37682077 37682739 -117947381 + Lx5 LINE L1 5349 5985 -1065 2 872 378 0 0 0 chr4 37682739 37682781 -117947339 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 872 5460 260 29 30 chr4 37682781 37683797 -117946323 + Lx5 LINE L1 5986 7031 -19 2 872 449 296 53 71 chr4 37683889 37684155 -117945965 - MARNA DNA Mariner -185 401 141 2 872 24 32 0 0 chr4 37685436 37685467 -117944653 + AT_rich Low_complexity Low_complexity 1 31 0 2 872 22 80 0 0 chr4 37686284 37686334 -117943786 + AT_rich Low_complexity Low_complexity 1 50 0 2 872 1892 196 10 12 chr4 37686345 37686753 -117943367 - MTB_Mm LTR MaLR 0 407 1 2 872 1040 319 68 33 chr4 37687216 37687731 -117942389 - Lx7 LINE L1 -361 7335 6803 2 872 983 169 6 6 chr4 37687944 37688111 -117942009 + B2_Mm2 SINE B2 5 171 -24 2 872 1199 198 36 8 chr4 37688114 37688364 -117941756 + Lx4A LINE L1 6802 7058 0 2 872 4336 98 11 0 chr4 37688373 37688983 -117941137 + L1_Mus4 LINE L1 6000 6616 -20 2 872 198 0 0 0 chr4 37689251 37689273 -117940847 + (TTA)n Simple_repeat Simple_repeat 1 22 0 2 872 198 0 0 0 chr4 37690731 37690753 -117939367 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 872 207 69 0 0 chr4 37690894 37690923 -117939197 + (A)n Simple_repeat Simple_repeat 1 29 0 2 872 1557 195 80 3 chr4 37691049 37691388 -117938732 - ORR1B2 LTR MaLR 0 367 3 2 872 2076 223 25 8 chr4 37691406 37691921 -117938199 + RLTR28 LTR ERVL 1 524 0 2 872 249 214 112 0 chr4 37691946 37692035 -117938085 - Lx2B LINE L1 0 7000 6902 2 872 430 165 35 0 chr4 37692017 37692102 -117938018 + Lx2B LINE L1 6326 6413 -587 2 872 229 120 0 107 chr4 37692843 37692899 -117937221 - L4 LINE RTE -1140 889 840 2 872 587 265 17 0 chr4 37693206 37693323 -117936797 + ETnERV2-int LTR ERVK 7070 7188 -218 2 872 5106 58 1 1 chr4 37693390 37694041 -117936079 - L1Md_F2 LINE L1 -12 6570 5920 2 872 712 296 7 22 chr4 37694763 37695039 -117935081 + L1_Rod LINE L1 4883 5154 -693 2 872 23 0 0 0 chr4 37696404 37696427 -117933693 + AT_rich Low_complexity Low_complexity 1 23 0 2 872 22 0 0 0 chr4 37696462 37696484 -117933636 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 7627 71 6 2 chr4 37696840 37697910 -117932210 + L1_Mus1 LINE L1 5532 6567 0 2 872 400 18 0 34 chr4 37698031 37698090 -117932030 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 2 872 226 117 33 16 chr4 37698622 37698683 -117931437 + T-rich Low_complexity Low_complexity 2 63 0 2 872 537 132 27 14 chr4 37698859 37699005 -117931115 + (TG)n Simple_repeat Simple_repeat 2 149 0 2 872 1927 128 20 18 chr4 37699423 37699765 -117930355 - Lx3_Mus LINE L1 -1 7008 6666 2 872 301 75 0 0 chr4 37699768 37699808 -117930312 + ORR1A3 LTR MaLR 287 326 0 2 872 556 289 0 11 chr4 37700512 37700687 -117929433 - L3 LINE CR1 -182 4307 4135 2 872 372 390 8 49 chr4 37700920 37701163 -117928957 - MLT1G3 LTR MaLR 0 595 363 2 872 246 421 70 8 chr4 37701514 37701756 -117928364 - MLT1G3-int LTR MaLR -4 1405 1149 2 872 443 33 33 0 chr4 37702178 37702238 -117927882 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 2 872 25 0 0 0 chr4 37702327 37702352 -117927768 + AT_rich Low_complexity Low_complexity 1 25 0 2 872 24 32 0 0 chr4 37702659 37702690 -117927430 + AT_rich Low_complexity Low_complexity 1 31 0 2 872 228 67 0 0 chr4 37703307 37703337 -117926783 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 872 570 79 0 0 chr4 37703337 37703426 -117926694 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 872 447 226 11 0 chr4 37703442 37703535 -117926585 - PB1D10 SINE Alu 0 117 24 2 872 328 113 38 0 chr4 37703820 37703873 -117926247 - B3 SINE B2 -8 208 154 2 872 231 378 55 76 chr4 37703974 37704263 -117925857 - B4A SINE B4 -9 283 1 2 872 35362 47 0 4 chr4 37704467 37709932 -117920188 + L1Md_T LINE L1 49 5589 -297 2 872 8253 34 0 0 chr4 37709932 37710914 -117919206 + L1Md_T LINE L1 5590 6571 -14 2 872 675 37 0 0 chr4 37712822 37712904 -117917216 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 872 375 23 0 0 chr4 37712904 37712947 -117917173 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 872 486 0 0 0 chr4 37713509 37713563 -117916557 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 872 468 215 207 0 chr4 37713566 37713687 -117916433 - B1_Mus1 SINE Alu 0 148 3 2 872 984 98 17 0 chr4 37713731 37713904 -117916216 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 2 872 417 311 26 47 chr4 37713940 37714132 -117915988 - B3A SINE B2 -6 192 5 2 872 242 357 67 4 chr4 37714491 37714661 -117915459 - MIRb SINE MIR -11 265 76 2 872 24 85 0 0 chr4 37714966 37715025 -117915095 + AT_rich Low_complexity Low_complexity 1 59 0 2 872 304 125 18 18 chr4 37715543 37715600 -117914520 - L1MC2 LINE L1 -173 6171 6115 2 872 279 0 0 0 chr4 37715711 37715742 -117914378 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 872 654 233 32 31 chr4 37716160 37716415 -117913705 + Lx4B LINE L1 6710 7058 0 2 872 2506 146 44 5 chr4 37716997 37717425 -117912695 + Lx LINE L1 6203 6647 -7 2 872 220 212 0 43 chr4 37717938 37718007 -117912113 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 2 872 254 331 47 29 chr4 37718317 37718488 -117911632 + Lx8 LINE L1 7291 7464 -9 2 872 295 291 176 7 chr4 37718828 37718970 -117911150 + Lx9 LINE L1 6601 6766 -878 2 872 397 293 130 57 chr4 37719021 37719267 -117910853 + Lx9 LINE L1 6907 7170 -474 2 872 21 0 0 0 chr4 37719270 37719291 -117910829 + AT_rich Low_complexity Low_complexity 1 21 0 2 872 281 100 0 20 chr4 37719291 37719298 -117910822 + (GAAA)n Simple_repeat Simple_repeat 1 7 0 2 872 1023 122 0 0 chr4 37719298 37719446 -117910674 + B1_Mus1 SINE Alu 1 148 0 2 872 281 100 0 20 chr4 37719446 37719489 -117910631 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2 872 217 155 35 0 chr4 37719753 37719811 -117910309 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 872 439 229 14 0 chr4 37719835 37719979 -117910141 + (TA)n Simple_repeat Simple_repeat 2 147 0 2 872 24 0 0 0 chr4 37719990 37720014 -117910106 + AT_rich Low_complexity Low_complexity 1 24 0 2 872 424 355 31 44 chr4 37720211 37720529 -117909591 + Lx8 LINE L1 7121 7434 -39 2 872 197 232 0 10 chr4 37722555 37722651 -117907469 + GA-rich Low_complexity Low_complexity 2 96 0 2 872 324 148 0 0 chr4 37722670 37722731 -117907389 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 872 231 36 0 0 chr4 37722847 37722875 -117907245 + (A)n Simple_repeat Simple_repeat 1 28 0 2 872 570 186 34 8 chr4 37724072 37724191 -117905929 + MTD LTR MaLR 296 417 -2 2 872 2691 282 44 70 chr4 37724195 37724463 -117905657 + MTD-int LTR MaLR 3 243 -1015 2 872 510 88 0 0 chr4 37724463 37724543 -117905577 - L1_Mus3 LINE L1 -4 6634 6555 2 872 2691 282 44 70 chr4 37724543 37725297 -117904823 + MTD-int LTR MaLR 244 998 -260 2 872 4163 222 39 23 chr4 37725329 37727353 -117902767 - Lx5 LINE L1 -6 7052 4940 2 872 1593 195 30 6 chr4 37727354 37727690 -117902430 + Lx5 LINE L1 4628 4971 -906 2 872 853 295 109 63 chr4 37727691 37728133 -117901987 - RMER19C LTR ERVK -149 462 1 2 872 3382 205 35 75 chr4 37728134 37729618 -117900502 - Lx5 LINE L1 -3633 2244 833 2 872 801 31 0 0 chr4 37729889 37729985 -117900135 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 872 407 272 43 14 chr4 37730058 37730196 -117899924 - Lx8 LINE L1 -1004 6469 6328 3 872 459 260 61 44 chr4 37730678 37730745 -117899375 + Lx8 LINE L1 5605 5669 -178 3 872 1577 32 0 16 chr4 37730745 37730935 -117899185 + B2_Mm1t SINE B2 1 187 -6 3 872 459 269 60 43 chr4 37730935 37731134 -117898986 + Lx8 LINE L1 5670 5909 -1564 3 872 934 332 42 7 chr4 37731415 37731864 -117898256 + Lx8 LINE L1 6221 6685 -788 3 872 4721 96 19 1 chr4 37731908 37732557 -117897563 + L1_Mus2 LINE L1 5906 6565 -1 3 872 28 61 0 0 chr4 37732593 37732642 -117897478 + AT_rich Low_complexity Low_complexity 1 49 0 3 872 21 36 0 0 chr4 37734140 37734168 -117895952 + AT_rich Low_complexity Low_complexity 1 28 0 3 872 234 320 0 51 chr4 37734261 37734340 -117895780 - B1F SINE Alu -8 141 67 3 872 986 284 67 7 chr4 37734365 37734635 -117895485 + MTD LTR MaLR 134 419 0 3 872 5006 104 16 1 chr4 37734693 37735423 -117894697 + Lx3_Mus LINE L1 6269 7009 0 3 872 445 325 85 25 chr4 37735472 37735671 -117894449 - Tigger6b DNA MER2_type -1299 298 88 3 872 409 228 0 102 chr4 37735800 37735819 -117894301 + MT2B LTR ERVL 152 157 -444 3 872 716 137 17 8 chr4 37735819 37735937 -117894183 + B1_Mm SINE Alu 4 122 -25 3 872 8155 59 0 4 chr4 37735937 37736973 -117893147 + L1Md_F2 LINE L1 4553 5584 -299 3 872 7713 64 1 3 chr4 37736975 37737973 -117892147 + L1Md_F2 LINE L1 5587 6582 0 3 872 249 108 0 0 chr4 37738233 37738270 -117891850 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 3 872 1003 286 96 13 chr4 37738693 37738956 -117891164 + ORR1D2 LTR MaLR 20 309 -61 3 872 1784 222 181 17 chr4 37738956 37739546 -117890574 + RMER6C LTR ERVK 1 687 -3 3 872 1003 286 96 13 chr4 37739546 37739594 -117890526 + ORR1D2 LTR MaLR 310 357 -13 3 872 35 0 0 0 chr4 37739915 37739950 -117890170 + AT_rich Low_complexity Low_complexity 1 35 0 3 872 7929 41 1 1 chr4 37740002 37741412 -117888708 - L1Md_F2 LINE L1 -2 6580 5170 3 872 467 163 12 0 chr4 37741492 37741578 -117888542 + Lx3_Mus LINE L1 1751 1837 -4049 3 872 23138 110 31 55 chr4 37741673 37742898 -117887222 + Lx3_Mus LINE L1 1842 2891 -2995 3 872 333 0 0 0 chr4 37742898 37742935 -117887185 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 3 872 23138 110 31 55 chr4 37742935 37743181 -117886939 + Lx3_Mus LINE L1 2892 3134 -2752 3 872 198 0 0 0 chr4 37743181 37743203 -117886917 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 3 872 222 62 0 0 chr4 37743212 37743244 -117886876 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 872 23138 110 31 55 chr4 37743244 37744689 -117885431 + Lx3_Mus LINE L1 3148 4635 -1251 3 872 284 0 28 0 chr4 37744689 37744725 -117885395 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 872 23138 113 43 31 chr4 37744725 37746998 -117883122 + Lx3_Mus LINE L1 4636 7009 0 3 872 189 0 0 0 chr4 37747244 37747265 -117882855 + (T)n Simple_repeat Simple_repeat 1 21 0 3 872 829 253 101 59 chr4 37747351 37747740 -117882380 - Lx4B LINE L1 -1151 5907 5456 3 872 21 36 0 0 chr4 37747768 37747796 -117882324 + AT_rich Low_complexity Low_complexity 1 28 0 3 872 290 194 15 0 chr4 37747838 37747905 -117882215 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 3 13 959 78 0 0 chr4 37748657 37748785 -117881335 + L1_Mus1 LINE L1 5962 6089 -478 3 873 7896 54 1 3 chr4 37748843 37750334 -117879786 - L1Md_F2 LINE L1 -12 6570 5083 3 873 1332 92 0 25 chr4 37751686 37751886 -117878234 + B2_Mm2 SINE B2 1 195 0 3 873 23 0 0 0 chr4 37752086 37752109 -117878011 + AT_rich Low_complexity Low_complexity 1 23 0 3 873 194 105 26 0 chr4 37752303 37752341 -117877779 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 3 873 226 329 0 25 chr4 37753334 37753415 -117876705 - Lx7 LINE L1 -438 7258 7180 3 873 31 0 0 0 chr4 37753484 37753515 -117876605 + AT_rich Low_complexity Low_complexity 1 31 0 3 873 1770 225 8 13 chr4 37754292 37754688 -117875432 - ORR1B1 LTR MaLR 0 394 1 3 873 625 329 154 53 chr4 37755457 37755776 -117874344 + ORR1D2 LTR MaLR 4 354 -5 3 873 695 235 11 0 chr4 37756216 37756395 -117873725 + L1_Mur3 LINE L1 4386 4566 -1314 3 873 3578 202 43 5 chr4 37756742 37757487 -117872633 - Lx4B LINE L1 -49 7009 6237 3 873 393 197 0 0 chr4 37757506 37757582 -117872538 + L1_Mur3 LINE L1 4983 5058 -819 3 873 258 250 0 0 chr4 37759054 37759126 -117870994 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 873 1734 152 42 3 chr4 37759126 37759437 -117870683 - L1_Mur2 LINE L1 -648 5229 4907 3 873 1874 270 144 10 chr4 37759692 37760302 -117869818 + Lx6 LINE L1 6761 7452 -8 3 873 441 0 0 0 chr4 37761853 37761902 -117868218 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 873 21 36 0 0 chr4 37762220 37762248 -117867872 + AT_rich Low_complexity Low_complexity 1 28 0 3 873 257 248 8 41 chr4 37762821 37762943 -117867177 - Lx6 LINE L1 -27 7433 7316 3 873 2174 150 39 3 chr4 37763118 37763499 -117866621 + RLTR44B LTR ERVK 55 449 0 3 873 282 305 152 36 chr4 37764317 37764678 -117865442 - L1MC3 LINE L1 -16 7769 7367 3 873 374 308 29 44 chr4 37764835 37764971 -117865149 - B3A SINE B2 -64 134 1 3 873 689 265 147 116 chr4 37766419 37766935 -117863185 - MT2A LTR ERVL -1 532 1 3 873 22 0 0 0 chr4 37767005 37767027 -117863093 + AT_rich Low_complexity Low_complexity 1 22 0 3 873 21 0 0 0 chr4 37767361 37767382 -117862738 + AT_rich Low_complexity Low_complexity 1 21 0 3 873 3471 158 60 11 chr4 37767552 37768194 -117861926 + Lx3A LINE L1 5748 6423 -558 3 873 2817 124 21 2 chr4 37768198 37768628 -117861492 + Lx3A LINE L1 6533 6970 -11 3 873 472 100 0 24 chr4 37768628 37768710 -117861410 + (TAA)n Simple_repeat Simple_repeat 1 80 0 3 873 459 0 0 0 chr4 37769027 37769078 -117861042 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 873 372 43 0 0 chr4 37769154 37769200 -117860920 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 873 4988 232 67 11 chr4 37769200 37770100 -117860020 - Lx4B LINE L1 -10 7048 6078 3 873 2891 58 39 8 chr4 37770100 37770484 -117859636 - MTA_Mm LTR MaLR 0 396 1 3 873 6910 89 40 75 chr4 37770484 37771622 -117858498 - MTA_Mm-int LTR MaLR 0 1098 1 3 873 2944 55 36 16 chr4 37771624 37772010 -117858110 - MTA_Mm LTR MaLR -2 394 1 3 873 4988 232 67 11 chr4 37772010 37772288 -117857832 - Lx4B LINE L1 -981 6077 5800 3 873 300 413 32 12 chr4 37773420 37773670 -117856450 + L2 LINE L2 2594 2848 -571 3 873 228 122 0 0 chr4 37773939 37773980 -117856140 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 873 1160 49 14 0 chr4 37774152 37774296 -117855824 + B1_Mm SINE Alu 2 147 0 3 873 921 182 12 57 chr4 37774317 37774562 -117855558 + L1_Mur1 LINE L1 5193 5426 -460 3 873 228 363 64 47 chr4 37774813 37775047 -117855073 - MLT2B1 LTR ERVL -3 564 327 3 873 210 208 0 0 chr4 37775401 37775449 -117854671 + CT-rich Low_complexity Low_complexity 1 48 0 3 873 195 129 0 0 chr4 37775449 37775480 -117854640 + (A)n Simple_repeat Simple_repeat 1 31 0 3 873 436 138 33 39 chr4 37775891 37776072 -117854048 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 873 203 158 0 0 chr4 37776073 37776111 -117854009 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 3 873 5641 185 59 3 chr4 37776112 37777176 -117852944 - Lx4A LINE L1 -18 7040 5917 3 873 297 115 96 0 chr4 37777176 37777228 -117852892 + Lx4A LINE L1 5859 5915 -1143 3 873 561 0 0 0 chr4 37777399 37777468 -117852652 + L1Md_T LINE L1 6514 6582 0 3 873 200 132 26 0 chr4 37777992 37778030 -117852090 + A-rich Low_complexity Low_complexity 2 40 0 3 873 2484 109 5 20 chr4 37778638 37779039 -117851081 + Lx3A LINE L1 6035 6429 -552 3 873 254 374 49 0 chr4 37780089 37780212 -117849908 + RSINE1 SINE B4 37 165 0 3 873 2574 256 74 18 chr4 37781005 37781117 -117849003 - RMER1B Other Other -5 1061 927 3 873 387 0 0 0 chr4 37781117 37781160 -117848960 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 873 2654 256 66 16 chr4 37781160 37782008 -117848112 - RMER1A Other Other -165 865 95 3 873 237 432 0 0 chr4 37782479 37782597 -117847523 + B4A SINE B4 2 119 -173 3 873 342 0 0 0 chr4 37782881 37782919 -117847201 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 873 30 0 0 0 chr4 37783493 37783523 -117846597 + AT_rich Low_complexity Low_complexity 1 30 0 3 873 6076 23 0 0 chr4 37783969 37784722 -117845398 + L1Md_T LINE L1 5544 6296 -286 3 873 6661 26 5 1 chr4 37784717 37785516 -117844604 - L1_Mm LINE L1 -437 5446 4645 3 873 21 36 0 0 chr4 37785585 37785613 -117844507 + AT_rich Low_complexity Low_complexity 1 28 0 3 873 22 35 0 0 chr4 37785904 37785933 -117844187 + AT_rich Low_complexity Low_complexity 1 29 0 3 873 454 322 67 20 chr4 37786402 37786804 -117843316 - L1M2 LINE L1 -798 5082 4676 3 873 769 241 87 16 chr4 37787062 37787323 -117842797 - ORR1C1 LTR MaLR -48 346 60 3 873 1787 179 6 143 chr4 37787324 37787764 -117842356 - Lx3B LINE L1 -811 6162 5790 3 873 2331 71 47 36 chr4 37787764 37788129 -117841991 - L1Md_F2 LINE L1 -1 6581 6213 3 873 1787 179 6 143 chr4 37788129 37788184 -117841936 - Lx3B LINE L1 -1184 5789 5735 3 873 4651 125 42 14 chr4 37788186 37788951 -117841169 + Lx3_Mus LINE L1 6211 6996 -13 3 873 288 206 63 0 chr4 37788977 37789040 -117841080 - ORR1C1 LTR MaLR -317 67 1 3 873 1536 217 68 44 chr4 37789151 37789604 -117840516 - RMER4A LTR ERVK 0 466 3 3 873 512 342 44 60 chr4 37789742 37789991 -117840129 - MTE2b LTR MaLR -116 263 19 3 873 227 200 0 0 chr4 37790010 37790060 -117840060 - MTE2b-int LTR MaLR -4 1254 1205 3 873 484 307 41 4 chr4 37790060 37790328 -117839792 + L1M3 LINE L1 4141 4418 -1722 3 873 277 349 57 65 chr4 37791019 37791267 -117838853 + Lx8 LINE L1 6595 6840 -633 3 873 871 326 24 6 chr4 37791265 37791601 -117838519 - Lx6 LINE L1 -26 7434 7093 3 873 492 387 66 5 chr4 37791601 37791978 -117838142 + Lx8 LINE L1 6830 7229 -244 3 873 438 20 0 0 chr4 37792074 37792125 -117837995 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 3 873 1254 97 0 2 chr4 37792796 37793217 -117836903 + (CA)n Simple_repeat Simple_repeat 1 420 0 3 873 25 51 0 0 chr4 37793621 37793660 -117836460 + AT_rich Low_complexity Low_complexity 1 39 0 3 873 1481 202 41 119 chr4 37794341 37794752 -117835368 + ORR1C2 LTR MaLR 4 382 -2 3 873 742 346 88 26 chr4 37795378 37795923 -117834197 - Lx9 LINE L1 -485 7159 6581 3 873 3251 137 52 12 chr4 37797638 37798224 -117831896 + RMER17A2 LTR ERVK 1 589 -317 3 873 1267 98 11 16 chr4 37798570 37798757 -117831363 - B2_Mm2 SINE B2 -8 187 2 3 873 39 22 0 0 chr4 37799081 37799127 -117830993 + AT_rich Low_complexity Low_complexity 1 46 0 3 873 195 139 0 0 chr4 37800082 37800118 -117830002 + (T)n Simple_repeat Simple_repeat 1 36 0 3 873 4418 119 121 43 chr4 37800172 37801023 -117829097 - L1_Mus2 LINE L1 0 6566 5650 3 873 2874 75 3 0 chr4 37801018 37801393 -117828727 + L1_Mus2 LINE L1 5293 5668 -215 3 873 1028 62 7 7 chr4 37801460 37801605 -117828515 + B1_Mus2 SINE Alu 2 146 -1 4 873 302 0 26 0 chr4 37801605 37801643 -117828477 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 873 214 115 19 19 chr4 37802621 37802674 -117827446 + CT-rich Low_complexity Low_complexity 2 54 0 4 873 311 182 13 0 chr4 37802673 37802750 -117827370 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 873 705 314 50 23 chr4 37803275 37803575 -117826545 + MER44A DNA MER2_type 22 329 -10 4 873 350 306 51 29 chr4 37804126 37804264 -117825856 - Lx8 LINE L1 -153 7320 7180 4 873 396 311 102 14 chr4 37804507 37804722 -117825398 - Lx7 LINE L1 -846 6850 6617 4 873 522 83 0 0 chr4 37804919 37804991 -117825129 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 873 23 54 0 0 chr4 37805420 37805457 -117824663 + AT_rich Low_complexity Low_complexity 1 37 0 4 873 34 42 0 0 chr4 37805631 37805679 -117824441 + AT_rich Low_complexity Low_complexity 1 48 0 4 873 25 31 0 0 chr4 37805942 37805974 -117824146 + AT_rich Low_complexity Low_complexity 1 32 0 4 873 254 283 43 0 chr4 37805989 37806081 -117824039 + Lx7 LINE L1 7212 7307 -389 4 873 322 243 18 18 chr4 37806087 37806196 -117823924 + T-rich Low_complexity Low_complexity 2 110 0 4 873 22 88 0 0 chr4 37806281 37806338 -117823782 + AT_rich Low_complexity Low_complexity 1 57 0 4 873 1882 253 149 24 chr4 37807618 37807733 -117822387 + Lx5 LINE L1 5030 5136 -744 4 873 813 118 7 7 chr4 37807733 37807878 -117822242 + Lx LINE L1 6509 6653 -1 4 873 3518 287 79 28 chr4 37807878 37809673 -117820447 + Lx5 LINE L1 5137 7050 0 4 873 219 114 0 0 chr4 37809982 37810017 -117820103 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 873 413 50 17 0 chr4 37810061 37810121 -117819999 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 873 743 124 116 0 chr4 37810162 37810283 -117819837 + B1_Mus2 SINE Alu 2 136 -11 4 873 375 23 0 0 chr4 37810283 37810327 -117819793 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 873 27 29 0 0 chr4 37810813 37810847 -117819273 + AT_rich Low_complexity Low_complexity 1 34 0 4 873 212 149 0 21 chr4 37810993 37811041 -117819079 + GA-rich Low_complexity Low_complexity 2 48 0 4 873 3354 115 162 3 chr4 37811228 37811863 -117818257 - L1_Mus4 LINE L1 -1 6635 5900 4 873 21 95 0 0 chr4 37812412 37812475 -117817645 + AT_rich Low_complexity Low_complexity 1 63 0 4 873 194 0 39 0 chr4 37813419 37813445 -117816675 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 873 413 318 38 55 chr4 37813466 37813649 -117816471 + B3A SINE B2 2 181 -17 4 873 982 271 35 22 chr4 37814374 37814691 -117815429 - RMER6C LTR ERVK 0 690 370 4 873 644 164 225 73 chr4 37814668 37814846 -117815274 - RMER6C LTR ERVK -482 208 4 4 873 484 275 13 30 chr4 37814846 37815028 -117815092 - Lx9 LINE L1 -1647 5997 5816 4 873 28 29 0 0 chr4 37815033 37815068 -117815052 + AT_rich Low_complexity Low_complexity 1 35 0 4 873 5028 155 90 1 chr4 37816577 37817528 -117812592 + Lx3C LINE L1 5941 6976 0 4 873 603 126 0 0 chr4 37818154 37818249 -117811871 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 873 227 358 21 21 chr4 37818450 37818547 -117811573 - PB1D10 SINE Alu -10 107 11 4 873 3173 212 96 39 chr4 37818547 37818836 -117811284 - L1_Mur2 LINE L1 -3533 2344 2058 4 873 630 26 0 0 chr4 37818836 37818912 -117811208 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 873 3173 206 87 43 chr4 37818912 37819725 -117810395 - L1_Mur2 LINE L1 -3820 2057 1187 4 873 6924 133 8 3 chr4 37819751 37821016 -117809104 + Lx LINE L1 5384 6654 0 4 873 2249 223 75 21 chr4 37821702 37822233 -117807887 + RLTR20B2 LTR ERVK 1 560 0 4 873 225 279 0 42 chr4 37822243 37822314 -117807806 - LTR39 LTR ERV1 -676 107 40 4 873 336 48 0 0 chr4 37822327 37822369 -117807751 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 873 387 0 0 0 chr4 37822370 37822413 -117807707 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 873 243 146 0 0 chr4 37822469 37822510 -117807610 + (T)n Simple_repeat Simple_repeat 1 41 0 4 873 937 169 0 0 chr4 37822511 37822659 -117807461 - B1_Mus1 SINE Alu 0 148 1 4 873 23 0 0 0 chr4 37823502 37823525 -117806595 + AT_rich Low_complexity Low_complexity 1 23 0 4 873 1587 33 0 0 chr4 37823529 37823712 -117806408 - B2_Mm1t SINE B2 -8 185 3 4 873 2438 174 7 14 chr4 37823742 37824161 -117805959 - Lx LINE L1 -169 6485 6070 4 873 243 0 0 0 chr4 37824329 37824356 -117805764 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 873 2950 153 25 29 chr4 37824356 37824899 -117805221 - Lx3A LINE L1 -12 6969 6429 4 873 734 289 114 55 chr4 37824917 37825503 -117804617 + Lx9 LINE L1 6983 7603 -41 4 873 242 29 29 0 chr4 37825931 37825966 -117804154 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 873 978 341 92 21 chr4 37826062 37826619 -117803501 + Lx8 LINE L1 6480 7075 -398 4 873 548 302 35 54 chr4 37827396 37827665 -117802455 + RLTR12B LTR ERVK 61 328 -240 4 873 402 74 0 0 chr4 37827962 37828016 -117802104 + (CAT)n Simple_repeat Simple_repeat 1 54 0 4 873 2053 159 11 22 chr4 37828031 37828391 -117801729 - Lx3B LINE L1 -6 6967 6612 4 873 1014 275 93 52 chr4 37828926 37829415 -117800705 + MYSERV6-int LTR ERVK 1 585 -8374 4 873 822 109 0 0 chr4 37829415 37829552 -117800568 + (GAA)n Simple_repeat Simple_repeat 3 139 0 4 873 577 266 124 51 chr4 37829552 37829641 -117800479 + MYSERV6-int LTR ERVK 339 459 -6091 4 873 770 263 6 0 chr4 37829634 37829809 -117800311 + MurERV4-int LTR ERVK 2969 3144 -2116 4 873 1282 271 63 75 chr4 37829816 37830551 -117799569 - RMER19C LTR ERVK -11 726 1 4 873 4138 198 57 9 chr4 37830552 37831936 -117798184 + MYSERV6-int LTR ERVK 2585 4034 -4925 4 873 509 143 18 9 chr4 37831936 37832049 -117798071 - L1_Mus3 LINE L1 0 6638 6525 4 873 3803 118 22 2 chr4 37832049 37832642 -117797478 + L1_Mm LINE L1 4398 5002 -881 4 873 1648 229 56 16 chr4 37832643 37833086 -117797034 + MYSERV6-int LTR ERVK 4074 4534 -4425 4 873 1819 282 56 31 chr4 37833092 37833791 -117796329 + MYSERV-int LTR ERVK 4365 5080 -1470 4 873 1377 55 33 0 chr4 37833792 37833975 -117796145 - L1Md_F2 LINE L1 -512 6070 5882 4 873 3728 75 0 8 chr4 37833975 37834471 -117795649 + L1Md_F2 LINE L1 6079 6570 -12 4 873 417 328 37 37 chr4 37834529 37834719 -117795401 + RMER4A LTR ERVK 246 435 -31 4 873 916 205 93 43 chr4 37834725 37835005 -117795115 + MYSERV-int LTR ERVK 5316 5609 -941 4 873 3398 181 47 31 chr4 37835007 37835749 -117794371 + MYSERV6-int LTR ERVK 8203 8956 -3 4 873 471 360 89 51 chr4 37835779 37836230 -117793890 + RLTR12B LTR ERVK 47 514 -14 4 873 270 333 133 16 chr4 37837064 37837192 -117792928 + B4A SINE B4 145 287 -5 4 873 627 289 23 50 chr4 37837211 37837430 -117792690 + ORR1D1 LTR MaLR 1 213 -161 4 873 429 20 0 0 chr4 37837483 37837533 -117792587 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 873 6766 163 16 9 chr4 37837870 37837952 -117792168 + Lx LINE L1 4652 4733 -1150 4 873 243 0 0 0 chr4 37837952 37837979 -117792141 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 873 6881 145 10 7 chr4 37837979 37839882 -117790238 + Lx LINE L1 4734 6644 -10 4 873 241 337 121 10 chr4 37840293 37840392 -117789728 + RMER1C Other Other 47 156 -1186 4 873 189 0 0 0 chr4 37840392 37840413 -117789707 + (T)n Simple_repeat Simple_repeat 1 21 0 4 873 739 310 16 36 chr4 37840454 37840702 -117789418 + RMER1C Other Other 723 965 -377 4 873 9173 190 8 31 chr4 37840725 37842801 -117787319 + L1_Mur1 LINE L1 1904 3930 -1956 4 873 1895 215 13 0 chr4 37842808 37843203 -117786917 + Lx LINE L1 6248 6647 -7 4 873 266 220 0 0 chr4 37843260 37843319 -117786801 + L1_Mm LINE L1 3927 3985 -1898 4 873 5380 202 54 21 chr4 37843317 37844543 -117785577 + Lx3C LINE L1 5655 6920 -56 4 873 23 33 0 0 chr4 37844551 37844581 -117785539 + AT_rich Low_complexity Low_complexity 1 30 0 4 873 22 88 0 0 chr4 37844672 37844729 -117785391 + AT_rich Low_complexity Low_complexity 1 57 0 4 873 285 358 11 0 chr4 37844806 37844901 -117785219 - ORR1D2 LTR MaLR -200 170 75 4 873 302 343 61 28 chr4 37844935 37845115 -117785005 + RMER15 LTR ERVL 379 564 -11 4 873 387 56 0 0 chr4 37845253 37845307 -117784813 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 873 273 196 0 0 chr4 37845516 37845572 -117784548 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 873 297 89 0 0 chr4 37847673 37847718 -117782402 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 873 34 55 0 0 chr4 37847902 37847957 -117782163 + AT_rich Low_complexity Low_complexity 1 55 0 4 873 404 369 0 0 chr4 37848117 37848239 -117781881 + B3A SINE B2 3 124 -74 4 873 333 0 0 0 chr4 37848271 37848308 -117781812 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 873 292 243 14 0 chr4 37848317 37848391 -117781729 + GA-rich Low_complexity Low_complexity 1 75 0 4 873 25 0 0 0 chr4 37848392 37848417 -117781703 + AT_rich Low_complexity Low_complexity 1 25 0 4 873 1522 263 42 12 chr4 37848449 37848849 -117781271 - MTC LTR MaLR -8 413 2 4 873 5872 76 20 32 chr4 37848870 37849702 -117780418 + RLTR13B2 LTR ERVK 1 822 0 4 873 2772 98 5 20 chr4 37849719 37850125 -117779995 - MTB LTR MaLR 0 400 1 4 873 1021 79 58 0 chr4 37850350 37850489 -117779631 - B1_Mus1 SINE Alu -1 147 1 4 873 262 246 291 8 chr4 37851284 37851411 -117778709 + RSINE1 SINE B4 3 165 0 4 873 34 0 0 0 chr4 37851452 37851486 -117778634 + AT_rich Low_complexity Low_complexity 1 34 0 4 873 1784 300 29 11 chr4 37852122 37852468 -117777652 + Lx5 LINE L1 6161 6518 -532 4 873 1039 74 6 104 chr4 37852468 37852650 -117777470 + L1_Mus2 LINE L1 6403 6566 0 4 873 1784 300 29 11 chr4 37852650 37852862 -117777258 + Lx5 LINE L1 6519 6729 -321 4 873 3361 91 2 42 chr4 37852864 37853387 -117776733 - L1_Mus2 LINE L1 0 6566 6092 4 873 3787 70 4 0 chr4 37853395 37853897 -117776223 + L1_Mus2 LINE L1 5588 6091 -475 4 873 676 310 56 19 chr4 37853890 37854209 -117775911 + Lx6 LINE L1 7103 7433 -27 4 873 21 57 0 0 chr4 37854560 37854595 -117775525 + AT_rich Low_complexity Low_complexity 1 35 0 4 873 239 356 27 120 chr4 37855863 37856013 -117774107 + B4A SINE B4 12 147 -145 4 873 365 0 0 22 chr4 37856163 37856209 -117773911 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 873 25 0 0 0 chr4 37856695 37856720 -117773400 + AT_rich Low_complexity Low_complexity 1 25 0 4 873 4114 97 2 38 chr4 37858185 37858502 -117771618 + L1_Mm LINE L1 4566 4861 -1022 5 873 5624 53 1 0 chr4 37858502 37859199 -117770921 + L1Md_F2 LINE L1 5873 6570 -12 5 873 4114 97 2 38 chr4 37859199 37859516 -117770604 + L1_Mm LINE L1 4862 5177 -706 5 873 4882 23 2 0 chr4 37859527 37860095 -117770025 - L1Md_F2 LINE L1 0 5883 5315 5 873 356 55 0 0 chr4 37860103 37860154 -117769966 + L1Md_F2 LINE L1 5897 5947 -637 5 873 861 61 0 0 chr4 37860166 37860280 -117769840 + B1_Mm SINE Alu 34 147 0 5 873 4881 57 0 5 chr4 37860283 37860902 -117769218 + L1Md_F2 LINE L1 5963 6578 -4 5 873 28 0 0 0 chr4 37860993 37861021 -117769099 + AT_rich Low_complexity Low_complexity 1 28 0 5 873 1703 234 66 15 chr4 37861071 37861539 -117768581 + RMER6D LTR ERVK 224 715 -5 5 873 236 338 13 13 chr4 37861933 37862011 -117768109 + ID4 SINE ID 2 79 -4 5 873 1196 167 156 3 chr4 37862912 37863194 -117766926 - L1_Mur2 LINE L1 -726 5151 4827 5 873 2654 225 60 16 chr4 37863195 37863813 -117766307 + Lx5 LINE L1 6406 7050 0 5 873 23 0 0 0 chr4 37863978 37864001 -117766119 + AT_rich Low_complexity Low_complexity 1 23 0 5 873 38873 33 2 6 chr4 37864001 37870196 -117759924 - L1Md_T LINE L1 -2 6580 415 5 873 1028 97 21 0 chr4 37870295 37870439 -117759681 + B1_Mus1 SINE Alu 1 147 -1 5 873 24 53 0 0 chr4 37870893 37870931 -117759189 + AT_rich Low_complexity Low_complexity 1 38 0 5 873 4117 118 38 57 chr4 37871077 37871780 -117758340 + Lx3A LINE L1 6282 6971 -10 5 873 360 0 0 0 chr4 37871796 37871836 -117758284 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 5 873 3898 129 26 3 chr4 37873312 37873928 -117756192 - Lx3A LINE L1 -350 6631 6002 5 873 2733 170 82 13 chr4 37873941 37874669 -117755451 - RLTR13D3 LTR ERVK -240 783 1 5 873 2660 138 2 21 chr4 37874669 37875098 -117755022 - Lx3A LINE L1 -966 6007 5587 5 873 1101 108 12 12 chr4 37875117 37875286 -117754834 + B2_Mm2 SINE B2 16 184 -11 5 873 26 74 0 0 chr4 37875472 37875526 -117754594 + AT_rich Low_complexity Low_complexity 1 54 0 5 873 1170 146 14 0 chr4 37876313 37876526 -117753594 - Lx LINE L1 0 6654 6439 5 873 2560 172 29 18 chr4 37876526 37877018 -117753102 - Lx2 LINE L1 -38 6959 6463 5 873 2010 224 96 94 chr4 37877885 37878552 -117751568 - RMER6C LTR ERVK -11 679 12 5 873 29 70 0 0 chr4 37878814 37878871 -117751249 + AT_rich Low_complexity Low_complexity 1 57 0 5 109 2445 217 3 27 chr4 37879478 37880042 -117750078 - Lx4B LINE L1 -4 7054 6504 5 874 503 143 0 0 chr4 37880042 37880112 -117750008 + MERVK26-int LTR ERVK 6849 6918 -1 5 874 2908 225 22 35 chr4 37880115 37880764 -117749356 + RLTR26 LTR ERVK 1 640 -2 5 874 490 309 37 5 chr4 37880768 37880957 -117749163 - L1VL4 LINE L1 -5579 723 529 5 874 381 333 49 6 chr4 37881483 37881646 -117748474 + B3A SINE B2 5 174 -24 5 874 22 80 0 0 chr4 37881754 37881804 -117748316 + AT_rich Low_complexity Low_complexity 1 50 0 5 874 180 0 0 0 chr4 37882103 37882123 -117747997 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 874 2586 131 8 0 chr4 37882869 37883251 -117746869 - L1_Mus3 LINE L1 -27 5856 5472 5 874 5255 94 23 4 chr4 37883251 37884001 -117746119 + L1_Mus3 LINE L1 5867 6630 -8 5 874 1541 141 14 18 chr4 37884459 37884734 -117745386 - Lx2B LINE L1 0 7000 6727 5 874 3790 245 52 17 chr4 37885323 37886879 -117743241 + L1_Mur3 LINE L1 154 1762 -4118 5 874 862 126 96 0 chr4 37886959 37887094 -117743026 + B1_Mus1 SINE Alu 1 148 0 5 874 469 314 87 23 chr4 37887270 37887707 -117742413 + Kanga2_a DNA Tc2 327 791 -97 5 874 399 172 11 21 chr4 37887840 37887935 -117742185 + L1Md_F3 LINE L1 6473 6566 -18 5 874 7565 51 19 0 chr4 37888002 37888997 -117741123 - L1Md_F2 LINE L1 -12 6570 5550 5 874 350 187 0 11 chr4 37889020 37889112 -117741008 + CT-rich Low_complexity Low_complexity 2 92 0 5 874 186 118 0 0 chr4 37889597 37889631 -117740489 + (A)n Simple_repeat Simple_repeat 1 34 0 5 874 5017 66 3 1 chr4 37889672 37890322 -117739798 - L1_Mus1 LINE L1 -1 6566 5916 5 874 21 0 0 0 chr4 37891487 37891508 -117738612 + AT_rich Low_complexity Low_complexity 1 21 0 5 874 1349 66 27 11 chr4 37891763 37891947 -117738173 - B2_Mm2 SINE B2 -6 189 3 5 874 1379 219 116 21 chr4 37892374 37892840 -117737280 + BGLII_B LTR ERVK 1 435 -6 5 874 289 287 78 33 chr4 37893404 37893494 -117736626 + B1F SINE Alu 1 94 -55 5 874 536 65 13 0 chr4 37893559 37893636 -117736484 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 874 23 0 0 0 chr4 37893893 37893916 -117736204 + AT_rich Low_complexity Low_complexity 1 23 0 5 874 318 294 164 6 chr4 37893936 37894107 -117736013 + B3 SINE B2 1 198 -18 5 874 324 120 0 0 chr4 37894112 37894162 -117735958 + (TAAG)n Simple_repeat Simple_repeat 2 51 0 5 874 498 244 97 15 chr4 37894244 37894430 -117735690 + L1_Rod LINE L1 5579 5845 -446 5 874 1168 302 56 34 chr4 37894471 37894691 -117735429 + Lx9 LINE L1 6898 7119 -525 5 874 324 0 0 0 chr4 37894691 37894727 -117735393 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 874 1168 302 56 34 chr4 37894727 37895038 -117735082 + Lx9 LINE L1 7120 7441 -203 5 874 615 88 0 0 chr4 37895045 37895136 -117734984 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 5 874 309 26 0 0 chr4 37895190 37895228 -117734892 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 874 311 349 29 23 chr4 37895791 37895964 -117734156 + MLT2D LTR ERVL 15 188 -226 5 874 248 325 57 8 chr4 37895991 37896115 -117734005 - Tigger7 DNA MER2_type -46 2445 2316 5 874 25 0 0 0 chr4 37896390 37896415 -117733705 + AT_rich Low_complexity Low_complexity 1 25 0 5 874 299 154 15 0 chr4 37896623 37896688 -117733432 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 874 2502 109 13 13 chr4 37897445 37897834 -117732286 + L1Md_F2 LINE L1 6190 6578 -4 5 874 211 216 0 0 chr4 37897941 37897992 -117732128 + A-rich Low_complexity Low_complexity 1 51 0 5 874 226 167 78 65 chr4 37898253 37898330 -117731790 + Charlie12 DNA MER1_type 49 126 -2747 5 874 515 199 24 94 chr4 37898940 37899067 -117731053 + B1_Mur4 SINE Alu 6 122 -27 5 874 4585 163 19 23 chr4 37899995 37900830 -117729290 + Lx3B LINE L1 6139 6970 -3 5 874 400 363 58 73 chr4 37901118 37901499 -117728621 + MTEa LTR MaLR 5 379 0 5 874 2839 55 3 27 chr4 37901555 37901929 -117728191 - RLTR10B2 LTR ERVK 0 365 1 5 874 4533 102 24 8 chr4 37901929 37902914 -117727206 - MMERVK10C-int LTR ERVK 0 7680 6646 5 874 2767 74 0 19 chr4 37902900 37903274 -117726846 - MMERVK10C-int LTR ERVK -1771 5810 5444 5 874 9016 2 0 0 chr4 37903285 37904518 -117725602 - L1Md_A LINE L1 0 6582 5350 5 874 5594 3 0 0 chr4 37904513 37905143 -117724977 + L1Md_A LINE L1 4718 5347 -536 5 874 36435 65 3 1 chr4 37905143 37909716 -117720404 - MMERVK10C-int LTR ERVK -2127 5454 871 5 874 1539 102 7 8 chr4 37909717 37910035 -117720085 - MMERVK10C-int LTR ERVK -7184 397 1 5 874 2816 51 40 0 chr4 37910035 37910386 -117719734 - RLTR10B2 LTR ERVK 0 365 1 5 874 286 107 36 0 chr4 37911098 37911154 -117718966 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 874 21 0 0 0 chr4 37911252 37911273 -117718847 + AT_rich Low_complexity Low_complexity 1 21 0 5 874 21 71 0 0 chr4 37911657 37911699 -117718421 + AT_rich Low_complexity Low_complexity 1 42 0 5 874 5069 150 25 0 chr4 37912065 37912913 -117717207 - Lx LINE L1 -3 6651 5783 5 874 4502 145 1 18 chr4 37912926 37913670 -117716450 - Lx LINE L1 0 6654 5923 5 874 2120 152 38 0 chr4 37913670 37914146 -117715974 + Lx LINE L1 5448 5938 -716 5 874 2945 138 7 0 chr4 37914140 37914596 -117715524 - L1_Mm LINE L1 -87 5796 5338 5 874 34 0 0 0 chr4 37915020 37915054 -117715066 + AT_rich Low_complexity Low_complexity 1 34 0 5 874 33 0 0 0 chr4 37915330 37915363 -117714757 + AT_rich Low_complexity Low_complexity 1 33 0 5 874 184 59 59 0 chr4 37916202 37916236 -117713884 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 874 270 277 15 0 chr4 37916249 37916314 -117713806 + B4A SINE B4 24 89 -203 5 874 2446 155 60 52 chr4 37916503 37917006 -117713114 + RMER15 LTR ERVL 12 518 -57 5 874 202 133 49 16 chr4 37919454 37919515 -117710605 + T-rich Low_complexity Low_complexity 1 63 0 5 874 504 157 4 43 chr4 37919526 37919786 -117710334 + T-rich Low_complexity Low_complexity 1 249 0 5 874 3063 60 120 5 chr4 37920064 37920496 -117709624 - RLTR45 LTR ERVK 0 482 1 5 874 293 266 42 42 chr4 37921509 37921627 -117708493 + B4A SINE B4 2 119 -173 5 874 257 262 16 0 chr4 37922219 37922280 -117707840 - BC1_Mm scRNA scRNA -69 83 22 5 874 333 0 0 0 chr4 37922298 37922335 -117707785 + (A)n Simple_repeat Simple_repeat 1 37 0 5 874 953 167 124 0 chr4 37922850 37923036 -117707084 + URR1A DNA MER1_type 7 215 -11 5 874 462 287 117 0 chr4 37923051 37923281 -117706839 - Lx9 LINE L1 -65 7579 7323 5 874 2475 205 53 4 chr4 37923289 37923783 -117706337 - RLTR12B LTR ERVK -10 518 1 5 874 2647 257 52 15 chr4 37923783 37924518 -117705602 - Lx9 LINE L1 -330 7314 6553 5 874 515 307 18 45 chr4 37924531 37924753 -117705367 - B3 SINE B2 0 216 1 5 874 241 91 0 0 chr4 37926076 37926109 -117704011 + Lx2B LINE L1 5897 5929 -1071 5 874 1413 321 100 36 chr4 37926610 37928129 -117701991 - Lx8 LINE L1 -488 6985 5335 5 874 189 0 0 0 chr4 37928150 37928171 -117701949 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 5 874 4063 206 13 18 chr4 37928171 37928993 -117701127 - Lx2B LINE L1 -32 6968 6151 5 874 5329 184 24 5 chr4 37928994 37929732 -117700388 + Lx2B LINE L1 4799 5548 -329 5 874 279 0 0 0 chr4 37929732 37929763 -117700357 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 874 5329 171 15 2 chr4 37929763 37930341 -117699779 + Lx2B LINE L1 5549 6144 -856 5 874 256 64 21 21 chr4 37930532 37930580 -117699540 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 874 977 68 0 15 chr4 37930581 37930716 -117699404 - B1_Mm SINE Alu -1 146 14 5 874 1708 122 9 75 chr4 37931168 37931513 -117698607 + RLTRETN_Mm LTR ERVK 1 322 0 5 874 22 35 0 0 chr4 37932042 37932071 -117698049 + AT_rich Low_complexity Low_complexity 1 29 0 5 874 22 0 0 0 chr4 37932324 37932346 -117697774 + AT_rich Low_complexity Low_complexity 1 22 0 5 874 38 89 0 0 chr4 37932920 37933021 -117697099 + AT_rich Low_complexity Low_complexity 1 101 0 5 874 258 296 27 109 chr4 37933763 37933873 -117696247 - B1F2 SINE Alu -22 127 27 5 874 2723 136 30 5 chr4 37933886 37934323 -117695797 - L1_Mus4 LINE L1 0 6636 6189 5 874 241 403 21 73 chr4 37936377 37936610 -117693510 + B4A SINE B4 4 224 -68 5 874 24 53 0 0 chr4 37936845 37936883 -117693237 + AT_rich Low_complexity Low_complexity 1 38 0 5 874 3978 205 38 57 chr4 37937253 37938159 -117691961 + Lx4A LINE L1 6166 7053 -5 6 874 224 91 23 0 chr4 37938160 37938204 -117691916 + (TAAAAA)n Simple_repeat Simple_repeat 5 49 0 6 874 819 307 75 48 chr4 37938474 37939011 -117691109 + L1M2 LINE L1 4480 5030 -1113 6 874 1414 247 48 21 chr4 37939393 37939420 -117690700 - RLTR20B3 LTR ERVK -68 509 483 6 874 369 43 0 0 chr4 37939420 37939467 -117690653 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 874 1414 227 242 18 chr4 37939467 37939860 -117690260 - RLTR20B3 LTR ERVK -95 482 1 6 874 1865 282 65 98 chr4 37939864 37940476 -117689644 - Lx6 LINE L1 -650 6810 6184 6 874 447 63 0 0 chr4 37940476 37940539 -117689581 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 874 1865 282 65 98 chr4 37940539 37940776 -117689344 - Lx6 LINE L1 -1277 6183 5989 6 874 242 287 82 0 chr4 37940835 37940957 -117689163 + L1MA5 LINE L1 6021 6152 -148 6 874 276 161 37 0 chr4 37941419 37941500 -117688620 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 874 3109 39 39 0 chr4 37941692 37942073 -117688047 - MTA_Mm LTR MaLR 0 396 1 6 874 221 0 0 33 chr4 37942187 37942217 -117687903 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 874 216 175 0 0 chr4 37943031 37943071 -117687049 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 874 26 0 0 0 chr4 37943461 37943487 -117686633 + AT_rich Low_complexity Low_complexity 1 26 0 6 874 338 212 0 0 chr4 37943671 37943737 -117686383 - Lx8 LINE L1 -395 7301 7236 6 874 1163 186 166 36 chr4 37943738 37944100 -117686020 + RLTR9E LTR ERVK 1 409 0 6 874 9879 159 7 8 chr4 37944101 37944242 -117685878 + ETnERV2-int LTR ERVK 2 134 -3180 6 874 1125 72 30 0 chr4 37944242 37944409 -117685711 + L1Md_F3 LINE L1 6413 6584 0 6 874 16575 189 32 25 chr4 37944409 37950069 -117680051 + ETnERV2-int LTR ERVK 135 6489 -917 6 874 258 106 0 0 chr4 37950152 37950199 -117679921 + (T)n Simple_repeat Simple_repeat 1 47 0 6 874 4597 139 11 5 chr4 37950242 37950907 -117679213 + ETnERV2-int LTR ERVK 6502 7170 -236 6 874 813 235 142 5 chr4 37950907 37951197 -117678923 + RLTR13D6 LTR ERVK 118 441 -461 6 874 243 204 0 0 chr4 37951214 37951258 -117678862 + RLTR13D6 LTR ERVK 494 537 -365 6 874 495 82 0 40 chr4 37951258 37951334 -117678786 + ETnERV2-int LTR ERVK 7329 7401 -5 6 874 1177 193 172 36 chr4 37951338 37951698 -117678422 + RLTR9E LTR ERVK 1 409 0 6 874 22 35 0 0 chr4 37952491 37952520 -117677600 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 575 205 102 0 chr4 37953162 37953289 -117676831 + RMER6D LTR ERVK 1 140 -580 6 874 465 239 0 0 chr4 37953297 37953385 -117676735 - RMER6-int LTR ERVK -1476 1701 1614 6 874 1915 191 57 0 chr4 37953396 37953762 -117676358 - RMER19B LTR ERVK -7 895 509 6 874 851 234 234 69 chr4 37953717 37954222 -117675898 + RMER6C LTR ERVK 41 628 -62 6 874 507 285 75 42 chr4 37954202 37954611 -117675509 + RMER6C LTR ERVK 297 718 -38 6 874 807 314 125 27 chr4 37954686 37955174 -117674946 - Lx8 LINE L1 -625 7071 6536 6 874 222 191 0 0 chr4 37955682 37955729 -117674391 + (TATG)n Simple_repeat Simple_repeat 3 49 0 6 874 719 139 6 0 chr4 37955831 37955997 -117674123 + (TC)n Simple_repeat Simple_repeat 2 168 0 6 874 2334 201 48 35 chr4 37956253 37956769 -117673351 - Lx4A LINE L1 -1 7057 6535 6 874 6738 162 7 20 chr4 37956802 37958046 -117672074 - L1_Mur2 LINE L1 -117 5760 4533 6 874 5343 182 18 14 chr4 37958046 37958282 -117671838 + L1_Mur2 LINE L1 4112 4347 -1530 6 874 6188 60 25 5 chr4 37958282 37959074 -117671046 + RLTR13C2 LTR ERVK 1 808 0 6 874 5343 182 18 14 chr4 37959074 37959241 -117670879 + L1_Mur2 LINE L1 4348 4512 -1365 6 874 2442 121 18 0 chr4 37959241 37959629 -117670491 + L1_Mus3 LINE L1 6243 6637 -1 6 874 5343 182 18 14 chr4 37959629 37960329 -117669791 + L1_Mur2 LINE L1 4513 5219 -658 6 874 3983 176 76 4 chr4 37960338 37961418 -117668702 - L1_Mur2 LINE L1 -4314 1563 395 6 874 25 0 0 0 chr4 37961897 37961922 -117668198 + AT_rich Low_complexity Low_complexity 1 25 0 6 874 262 377 40 16 chr4 37963243 37963367 -117666753 - ID_B1 SINE B4 -15 209 83 6 874 234 174 0 0 chr4 37963718 37963764 -117666356 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 874 2655 82 0 69 chr4 37963947 37964353 -117665767 - L1_Mus2 LINE L1 -1 6565 6188 6 874 251 50 9 53 chr4 37964353 37964412 -117665708 + L1_Mus2 LINE L1 5896 5949 -633 6 874 22 56 0 0 chr4 37965900 37965936 -117664184 + AT_rich Low_complexity Low_complexity 1 36 0 6 874 380 328 30 0 chr4 37966641 37966775 -117663345 - B1_Mur2 SINE Alu -10 139 2 6 874 21 0 0 0 chr4 37968136 37968157 -117661963 + AT_rich Low_complexity Low_complexity 1 21 0 6 874 3713 243 45 25 chr4 37969717 37970053 -117660067 - Lx2B LINE L1 -2 6998 6650 6 874 3299 50 0 0 chr4 37970053 37970449 -117659671 + MTA_Mm LTR MaLR 1 396 0 6 874 9162 38 0 0 chr4 37970449 37971547 -117658573 + MTA_Mm-int LTR MaLR 1 1098 0 6 874 3310 48 0 0 chr4 37971547 37971943 -117658177 + MTA_Mm LTR MaLR 1 396 0 6 874 9162 38 0 0 chr4 37971943 37973041 -117657079 + MTA_Mm-int LTR MaLR 1 1098 0 6 874 3427 33 0 0 chr4 37973041 37973437 -117656683 + MTA_Mm LTR MaLR 1 396 0 6 874 3713 243 45 25 chr4 37973437 37974085 -117656035 - Lx2B LINE L1 -351 6649 5994 6 874 492 255 80 12 chr4 37974598 37974761 -117655359 - Lx6 LINE L1 0 7460 7287 6 874 312 264 131 35 chr4 37975099 37975244 -117654876 + MLT1D LTR MaLR 341 499 -6 6 874 29 47 0 0 chr4 37975334 37975377 -117654743 + AT_rich Low_complexity Low_complexity 1 43 0 6 874 608 205 0 6 chr4 37975469 37975641 -117654479 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 874 235 194 0 65 chr4 37975645 37975722 -117654398 - Lx9 LINE L1 -128 7516 7445 6 874 219 69 0 0 chr4 37975728 37975757 -117654363 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 874 567 0 0 0 chr4 37976744 37976807 -117653313 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 874 985 294 123 15 chr4 37976925 37977257 -117652863 - ORR1D2 LTR MaLR 0 370 3 6 874 301 344 68 12 chr4 37977260 37977422 -117652698 + B3 SINE B2 39 209 -7 6 874 22 0 0 0 chr4 37979371 37979393 -117650727 + AT_rich Low_complexity Low_complexity 1 22 0 6 874 318 50 0 0 chr4 37979606 37979646 -117650474 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 874 555 316 41 32 chr4 37979672 37980012 -117650108 - L1_Rod LINE L1 -1690 4157 3815 6 874 402 121 0 0 chr4 37980091 37980157 -117649963 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 874 840 149 24 0 chr4 37980209 37980377 -117649743 - Lx LINE L1 -5 6649 6478 6 874 271 184 0 0 chr4 37980377 37980426 -117649694 + L1VL2 LINE L1 187 235 -6100 6 874 291 296 38 51 chr4 37980791 37981026 -117649094 + L1M2 LINE L1 4318 4549 -1594 6 874 671 71 0 0 chr4 37981095 37981180 -117648940 - L1_Mus3 LINE L1 -418 6220 6136 6 874 1742 94 4 0 chr4 37981176 37981435 -117648685 + L1_Mus3 LINE L1 5899 6141 -497 6 874 5742 147 58 3 chr4 37982244 37984087 -117646033 + L1_Mur1 LINE L1 80 2035 -3851 6 874 2388 101 11 3 chr4 37984087 37984444 -117645676 - MTB LTR MaLR -40 360 1 6 874 5169 225 94 16 chr4 37984449 37985071 -117645049 + L1_Mm LINE L1 2456 3189 -2694 6 874 1165 43 0 0 chr4 37985071 37985211 -117644909 + B1_Mus2 SINE Alu 2 141 -6 6 874 5169 225 94 16 chr4 37985211 37986061 -117644059 + L1_Mm LINE L1 3190 4042 -1841 6 874 7534 111 4 3 chr4 37986051 37986677 -117643443 + Lx3A LINE L1 5284 5906 -1075 6 874 351 0 0 0 chr4 37986677 37986716 -117643404 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 874 7534 133 138 7 chr4 37986716 37987658 -117642462 + Lx3A LINE L1 5907 6980 -1 6 874 243 0 0 0 chr4 37987665 37987692 -117642428 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 874 27 62 0 0 chr4 37987808 37987856 -117642264 + AT_rich Low_complexity Low_complexity 1 48 0 6 874 22 70 0 0 chr4 37987941 37987984 -117642136 + AT_rich Low_complexity Low_complexity 1 43 0 6 874 4025 57 19 8 chr4 37987986 37988512 -117641608 - L1Md_F2 LINE L1 -5 6577 6046 6 874 3086 153 14 54 chr4 37988512 37989430 -117640690 + L1Md_F2 LINE L1 5658 6512 -126 6 874 301 389 50 0 chr4 37989639 37989778 -117640342 + RSINE1 SINE B4 14 159 -6 6 874 201 338 0 0 chr4 37989793 37989864 -117640256 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 874 204 184 0 0 chr4 37989923 37989972 -117640148 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 874 249 351 7 79 chr4 37990042 37990181 -117639939 - B4A SINE B4 -53 239 111 6 874 811 356 104 73 chr4 37992058 37992824 -117637296 + MTE-int LTR MaLR 763 1552 -28 6 874 23 0 0 0 chr4 37993512 37993535 -117636585 + AT_rich Low_complexity Low_complexity 1 23 0 6 874 729 111 71 8 chr4 37993761 37993888 -117636232 - B1_Mus1 SINE Alu 0 148 14 6 874 232 250 134 24 chr4 37994251 37994333 -117635787 + B3 SINE B2 2 92 -124 6 874 1750 268 110 34 chr4 37994573 37995183 -117634937 - RMER1B Other Other -6 1060 405 6 874 28 29 0 0 chr4 37995442 37995477 -117634643 + AT_rich Low_complexity Low_complexity 1 35 0 6 874 26821 85 5 2 chr4 37995560 38000000 -117630120 - L1Md_F2 LINE L1 -16 6566 2113 6 874 6174 93 8 8 chr4 38000001 38001024 -117629096 - L1Md_A LINE L1 -3772 2111 1108 1 874 11868 55 1 0 chr4 38001026 38003227 -117626893 - L1Md_F2 LINE L1 0 6582 4381 2 874 588 289 48 89 chr4 38004484 38004879 -117625241 - MTEb LTR MaLR 0 379 1 3 874 231 36 0 0 chr4 38005744 38005772 -117624348 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 874 249 103 0 0 chr4 38005772 38005786 -117624334 + (TA)n Simple_repeat Simple_repeat 1 14 0 5 874 297 0 0 0 chr4 38005786 38005819 -117624301 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 874 249 103 0 0 chr4 38005819 38005843 -117624277 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 874 1038 228 79 0 chr4 38006757 38007060 -117623060 + Lx9 LINE L1 7318 7644 0 8 874 203 167 0 0 chr4 38007077 38007113 -117623007 + (TATG)n Simple_repeat Simple_repeat 3 38 0 9 874 461 366 32 11 chr4 38007118 38007303 -117622817 + B3A SINE B2 1 189 -9 1 874 394 279 99 15 chr4 38007392 38007523 -117622597 + B1_Mur4 SINE Alu 7 148 -2 1 874 27 29 0 0 chr4 38007587 38007621 -117622499 + AT_rich Low_complexity Low_complexity 1 34 0 1 874 473 0 18 0 chr4 38007621 38007678 -117622442 + (TTA)n Simple_repeat Simple_repeat 2 59 0 1 874 403 39 0 0 chr4 38007680 38007731 -117622389 - B1_Mus2 SINE Alu -6 141 91 1 874 3031 141 8 10 chr4 38007733 38008235 -117621885 - Lx2 LINE L1 -8 6989 6489 1 109 40734 11 1 6 chr4 38008235 38014899 -117615221 - L1Md_A LINE L1 0 6582 7 1 875 3561 165 5 2 chr4 38014900 38015506 -117614614 - Lx2 LINE L1 -495 6502 5895 1 875 6245 135 45 17 chr4 38015736 38017050 -117613070 - Lx LINE L1 -2 6652 5300 1 875 860 189 12 0 chr4 38017578 38017747 -117612373 - L1_Mur2 LINE L1 -561 5316 5146 1 875 1464 196 20 0 chr4 38017752 38018048 -117612072 + L1_Mur2 LINE L1 4870 5171 -706 1 875 21 0 0 0 chr4 38019227 38019248 -117610872 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 1137 291 48 12 chr4 38021904 38022259 -117607861 - MTE2b LTR MaLR -10 369 1 2 875 220 233 27 0 chr4 38022434 38022507 -117607613 + T-rich Low_complexity Low_complexity 3 77 0 2 875 1441 208 63 6 chr4 38022507 38022841 -117607279 + RMER6C LTR ERVK 338 690 0 2 875 1459 243 108 32 chr4 38022841 38023407 -117606713 + Lx9 LINE L1 7036 7644 0 2 875 1621 279 40 57 chr4 38023591 38024013 -117606107 - RMER6C LTR ERVK 0 690 258 2 875 4845 117 12 18 chr4 38024013 38024782 -117605338 - Lx LINE L1 -1 6653 5890 2 875 1621 279 40 57 chr4 38024782 38025061 -117605059 - RMER6C LTR ERVK -433 257 1 2 875 264 59 0 0 chr4 38025526 38025560 -117604560 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2 875 21 0 0 0 chr4 38025994 38026015 -117604105 + AT_rich Low_complexity Low_complexity 1 21 0 2 875 221 57 29 0 chr4 38026667 38026702 -117603418 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 875 753 83 0 9 chr4 38026702 38026812 -117603308 - B1_Mus2 SINE Alu 0 147 39 2 875 291 233 21 75 chr4 38026743 38026836 -117603284 - RLTR25B LTR ERVK -521 507 420 3 875 303 28 0 0 chr4 38026981 38027017 -117603103 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3 875 1645 127 0 32 chr4 38027050 38027267 -117602853 + Lx3B LINE L1 6463 6678 -295 3 875 6213 75 49 18 chr4 38027267 38028168 -117601952 + RLTR13B3 LTR ERVK 1 929 0 3 875 1645 127 0 32 chr4 38028168 38028203 -117601917 + Lx3B LINE L1 6679 6707 -266 3 875 4492 147 9 12 chr4 38028417 38029180 -117600940 - Lx2 LINE L1 -2 6995 6235 3 875 2197 39 7 34 chr4 38029180 38029475 -117600645 - L1Md_F3 LINE L1 0 6584 6298 3 875 717 176 11 6 chr4 38030485 38030662 -117599458 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 875 229 240 10 10 chr4 38030679 38030776 -117599344 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 875 300 200 0 0 chr4 38031414 38031484 -117598636 + CT-rich Low_complexity Low_complexity 3 72 0 3 875 24 32 0 0 chr4 38032143 38032174 -117597946 + AT_rich Low_complexity Low_complexity 1 31 0 3 875 561 30 0 0 chr4 38032859 38032926 -117597194 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 875 23240 121 11 93 chr4 38032926 38037809 -117592311 - Lx3A LINE L1 -10 6971 2535 4 875 3240 87 42 0 chr4 38037809 38038259 -117591861 + L1_Mus1 LINE L1 6096 6564 -3 4 875 23240 115 12 117 chr4 38038259 38038958 -117591162 - Lx3A LINE L1 -3352 2534 1887 4 875 246 32 0 0 chr4 38038958 38038989 -117591131 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 875 23240 115 12 117 chr4 38038989 38039197 -117590923 - Lx3A LINE L1 -4000 1886 1678 4 875 3828 200 94 15 chr4 38039198 38040089 -117590031 - Lx3A LINE L1 -6020 964 3 4 875 763 195 10 87 chr4 38040089 38040297 -117589823 - L1_Mur1 LINE L1 -6775 207 16 4 875 25 0 0 0 chr4 38040657 38040682 -117589438 + AT_rich Low_complexity Low_complexity 1 25 0 4 875 1295 152 27 0 chr4 38041893 38042117 -117588003 + RMER6C LTR ERVK 461 690 0 4 875 21 36 0 0 chr4 38042418 38042446 -117587674 + AT_rich Low_complexity Low_complexity 1 28 0 4 875 288 0 0 0 chr4 38042579 38042611 -117587509 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 875 638 212 8 0 chr4 38042691 38042823 -117587297 + B1_Mus1 SINE Alu 2 134 -14 4 875 882 95 0 0 chr4 38042824 38042950 -117587170 + (GAA)n Simple_repeat Simple_repeat 2 127 0 4 875 656 308 65 0 chr4 38043045 38043259 -117586861 - ORR1D1 LTR MaLR -146 228 1 5 875 2969 116 15 18 chr4 38044191 38044647 -117585473 - Lx3_Mus LINE L1 0 7009 6555 5 875 1068 200 18 65 chr4 38044654 38044954 -117585166 - RMER19B LTR ERVK -22 880 297 5 875 6956 185 36 6 chr4 38044954 38047190 -117582930 + Lx4B LINE L1 4740 7051 -7 5 875 319 317 104 20 chr4 38047611 38048013 -117582107 - L1MC LINE L1 -3084 3062 2627 5 875 213 283 0 0 chr4 38048436 38048482 -117581638 + (CATG)n Simple_repeat Simple_repeat 2 47 0 5 875 1009 211 44 112 chr4 38048507 38048869 -117581251 - Lx7 LINE L1 -15 7681 7354 5 875 344 40 20 0 chr4 38048869 38048919 -117581201 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 875 1009 211 44 112 chr4 38048919 38049010 -117581110 - Lx7 LINE L1 -343 7353 7260 5 875 1002 291 0 8 chr4 38048999 38049259 -117580861 + Lx6 LINE L1 7194 7451 -9 5 875 1948 243 23 25 chr4 38049334 38049819 -117580301 - Lx7 LINE L1 -466 7230 6747 5 875 983 259 29 18 chr4 38049815 38049875 -117580245 + Lx7 LINE L1 6123 6185 -1511 5 875 450 0 0 0 chr4 38049875 38049925 -117580195 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 875 983 259 29 18 chr4 38049925 38050139 -117579981 + Lx7 LINE L1 6186 6399 -1297 5 875 25 51 0 0 chr4 38051255 38051294 -117578826 + AT_rich Low_complexity Low_complexity 1 39 0 6 875 1075 102 0 0 chr4 38051332 38051479 -117578641 - B1_Mus1 SINE Alu 0 148 2 6 875 28 29 0 0 chr4 38051527 38051562 -117578558 + AT_rich Low_complexity Low_complexity 1 35 0 6 875 21 57 0 0 chr4 38052047 38052082 -117578038 + AT_rich Low_complexity Low_complexity 1 35 0 6 875 1481 235 55 27 chr4 38053043 38053410 -117576710 - ORR1C1 LTR MaLR -1 377 1 6 875 2464 240 30 34 chr4 38053410 38054079 -117576041 - ORR1C1-int LTR MaLR 0 1509 844 6 875 578 271 132 39 chr4 38054103 38054311 -117575809 - RCHARR1 DNA MER1_type -718 256 25 6 875 387 41 0 0 chr4 38054311 38054360 -117575760 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 875 578 271 132 39 chr4 38054360 38054385 -117575735 - RCHARR1 DNA MER1_type -950 24 1 6 875 4852 57 2 3 chr4 38054769 38055381 -117574739 + L1Md_F2 LINE L1 5957 6567 -15 6 875 360 0 0 0 chr4 38055414 38055454 -117574666 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 6 875 9491 155 18 9 chr4 38056035 38058002 -117572118 - L1_Mus4 LINE L1 -10 6626 4627 7 875 267 31 0 0 chr4 38058002 38058034 -117572086 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 875 9491 188 30 13 chr4 38058034 38058721 -117571399 - L1_Mus4 LINE L1 -1257 4626 3940 7 875 402 21 0 0 chr4 38058721 38058768 -117571352 + (T)n Simple_repeat Simple_repeat 1 47 0 7 875 2940 80 0 3 chr4 38058797 38059187 -117570933 - L1_Mus1 LINE L1 0 6567 6179 7 875 2676 36 3 0 chr4 38059187 38059517 -117570603 - IAPEY_LTR LTR ERVK 0 385 55 7 875 875 84 8 0 chr4 38059517 38059636 -117570484 - L1_Mus1 LINE L1 -383 6184 6065 7 875 11152 130 23 28 chr4 38059629 38061678 -117568442 - L1_Mus4 LINE L1 -1927 3956 1911 7 875 669 25 0 0 chr4 38061678 38061757 -117568363 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 875 11152 121 22 29 chr4 38061757 38061988 -117568132 - L1_Mus4 LINE L1 -2004 1910 1679 7 875 1004 302 77 26 chr4 38061988 38062443 -117567677 - L1VL4 LINE L1 -5688 614 137 7 875 25 31 0 0 chr4 38062601 38062633 -117567487 + AT_rich Low_complexity Low_complexity 1 32 0 7 875 24 0 0 0 chr4 38062745 38062769 -117567351 + AT_rich Low_complexity Low_complexity 1 24 0 7 875 2808 44 12 0 chr4 38063430 38063771 -117566349 - ORR1A0 LTR MaLR -1 345 1 7 875 13627 61 7 1 chr4 38063771 38065549 -117564571 - ORR1A0-int LTR MaLR 0 1792 4 7 875 2925 35 0 3 chr4 38065552 38065899 -117564221 - ORR1A0 LTR MaLR 0 346 1 7 875 3414 78 2 0 chr4 38066072 38066520 -117563600 - L1_Mus1 LINE L1 -4 6563 6115 8 875 281 311 14 0 chr4 38066862 38066936 -117563184 + B3A SINE B2 1 75 -123 8 875 259 286 85 9 chr4 38067280 38067386 -117562734 - Lx8 LINE L1 -571 6902 6789 8 875 702 262 37 5 chr4 38067389 38067577 -117562543 + Lx6 LINE L1 7088 7281 -179 8 875 394 308 45 15 chr4 38067614 38067812 -117562308 + Lx6 LINE L1 7253 7456 -4 8 875 325 352 25 6 chr4 38067820 38067983 -117562137 - Lx8 LINE L1 -693 6780 6615 8 875 249 330 52 66 chr4 38068511 38068722 -117561398 + L2c LINE L2 3177 3384 -3 8 875 207 296 0 0 chr4 38069826 38069880 -117560240 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 8 875 481 241 26 9 chr4 38069937 38070050 -117560070 + URR1B DNA MER1_type 109 223 -2 8 875 21 0 0 0 chr4 38070329 38070350 -117559770 + AT_rich Low_complexity Low_complexity 1 21 0 8 875 2552 55 46 11 chr4 38070386 38070737 -117559383 + L1Md_F2 LINE L1 6220 6582 0 8 875 1644 238 24 44 chr4 38070819 38071277 -117558843 + RMER19C LTR ERVK 138 586 -25 8 875 6328 100 11 6 chr4 38071923 38072836 -117557284 - Lx3_Mus LINE L1 -8 7001 6084 9 875 713 128 0 0 chr4 38072846 38072955 -117557165 + L1_Mur1 LINE L1 5368 5476 -410 9 875 380 94 0 0 chr4 38072956 38073009 -117557111 + L1_Mur1 LINE L1 5417 5469 -417 9 875 290 409 0 0 chr4 38073100 38073193 -117556927 - B3A SINE B2 -35 163 71 9 875 243 0 0 0 chr4 38073253 38073280 -117556840 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 9 875 2803 141 13 2 chr4 38073339 38073800 -117556320 + Lx2 LINE L1 6531 6996 -1 9 875 7910 44 1 26 chr4 38073818 38074828 -117555292 + L1Md_F2 LINE L1 5598 6582 0 9 875 225 154 0 0 chr4 38075959 38075998 -117554122 + CT-rich Low_complexity Low_complexity 2 40 0 9 875 242 359 16 64 chr4 38076081 38076206 -117553914 + RMER12 LTR ERVK 718 836 -486 9 875 452 93 0 13 chr4 38076675 38076751 -117553369 + (TA)n Simple_repeat Simple_repeat 2 76 0 9 875 1218 341 31 10 chr4 38076836 38077316 -117552804 - RLTR18B LTR ERVK -22 490 1 1 875 233 246 29 0 chr4 38077327 38077396 -117552724 + L1_Rod LINE L1 1711 1781 -4066 1 875 27 49 0 0 chr4 38077406 38077447 -117552673 + AT_rich Low_complexity Low_complexity 1 41 0 1 875 321 113 0 0 chr4 38077965 38078027 -117552093 + Lx LINE L1 6591 6652 -2 1 875 350 115 0 16 chr4 38078753 38078815 -117551305 + (TTA)n Simple_repeat Simple_repeat 2 62 0 1 875 198 150 0 0 chr4 38079264 38079304 -117550816 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1 875 1169 292 75 3 chr4 38079651 38080011 -117550109 + MTD LTR MaLR 14 399 -20 1 875 881 293 78 84 chr4 38080027 38081113 -117549007 + MTD-int LTR MaLR 1 1242 -16 1 875 964 333 49 3 chr4 38081113 38081501 -117548619 + MTD LTR MaLR 1 406 -13 1 875 1594 184 16 3 chr4 38081504 38081826 -117548294 + Lx3B LINE L1 6642 6967 -6 1 875 25 0 0 0 chr4 38081826 38081851 -117548269 + AT_rich Low_complexity Low_complexity 1 25 0 1 875 210 37 0 0 chr4 38082144 38082171 -117547949 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 875 1615 127 37 4 chr4 38082543 38082811 -117547309 + Lx2 LINE L1 6713 6989 -8 1 875 681 13 0 0 chr4 38082813 38082891 -117547229 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 875 195 121 0 0 chr4 38083418 38083436 -117546684 + (TA)n Simple_repeat Simple_repeat 2 19 0 1 875 507 60 0 0 chr4 38083436 38083503 -117546617 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 875 195 121 0 0 chr4 38083503 38083517 -117546603 + (TA)n Simple_repeat Simple_repeat 2 15 0 1 875 266 328 123 0 chr4 38083915 38084037 -117546083 - MLT1B LTR MaLR -253 137 1 1 875 22 0 0 0 chr4 38084965 38084987 -117545133 + AT_rich Low_complexity Low_complexity 1 22 0 1 875 7090 84 19 6 chr4 38085294 38086572 -117543548 - L1Md_F2 LINE L1 -1 6581 5288 1 875 7021 90 24 5 chr4 38086572 38087888 -117542232 - L1Md_F2 LINE L1 0 6582 5248 1 875 261 0 0 0 chr4 38087888 38087917 -117542203 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 875 4942 90 21 0 chr4 38087917 38087959 -117542161 - L1Md_F2 LINE L1 -636 5247 5192 1 875 22 35 0 0 chr4 38088436 38088465 -117541655 + AT_rich Low_complexity Low_complexity 1 29 0 1 875 666 0 0 0 chr4 38088759 38088833 -117541287 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 1 875 869 81 97 0 chr4 38088835 38088959 -117541161 - B1_Mus2 SINE Alu -11 136 1 1 875 1105 253 127 21 chr4 38089472 38089851 -117540269 - MTD LTR MaLR 0 419 1 1 875 1290 155 12 8 chr4 38089858 38090099 -117540021 - L1_Mus3 LINE L1 -3 6635 6394 1 875 605 189 16 8 chr4 38090146 38090274 -117539846 - L1_Mur3 LINE L1 -2140 3740 3612 1 875 804 205 0 0 chr4 38090472 38090643 -117539477 + GA-rich Low_complexity Low_complexity 2 172 0 1 875 24 32 0 0 chr4 38091318 38091349 -117538771 + AT_rich Low_complexity Low_complexity 1 31 0 1 875 8668 18 1 0 chr4 38091483 38092800 -117537320 - L1Md_A LINE L1 0 6582 5265 1 875 1444 23 12 0 chr4 38092800 38092972 -117537148 - L1Md_A LINE L1 -960 4923 4750 1 875 315 0 0 0 chr4 38092986 38093021 -117537099 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 875 209 306 0 0 chr4 38093065 38093127 -117536993 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 875 1817 186 87 18 chr4 38093236 38093675 -117536445 + L1_Mur1 LINE L1 4976 5444 -442 1 875 1475 265 133 12 chr4 38093673 38094148 -117535972 + Lx2B LINE L1 6455 6984 -13 1 875 3730 104 60 47 chr4 38094473 38095089 -117535031 - L1_Mus2 LINE L1 -119 6447 5824 1 875 227 167 37 0 chr4 38095292 38095346 -117534774 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 1 875 2591 259 29 8 chr4 38095352 38095964 -117534156 - Lx5 LINE L1 -47 7003 6379 1 875 5690 159 39 27 chr4 38096004 38097645 -117532475 - L1_Mus4 LINE L1 -2 6634 4964 1 875 2357 190 17 4 chr4 38097635 38098117 -117532003 + L1_Mur2 LINE L1 4084 4571 -1306 1 875 896 164 0 0 chr4 38098123 38098269 -117531851 + L1_Mur2 LINE L1 5456 5601 -276 1 875 36 53 0 0 chr4 38098918 38098975 -117531145 + AT_rich Low_complexity Low_complexity 1 57 0 1 875 23 54 0 0 chr4 38099012 38099049 -117531071 + AT_rich Low_complexity Low_complexity 1 37 0 1 875 23 54 0 0 chr4 38099906 38099943 -117530177 + AT_rich Low_complexity Low_complexity 1 37 0 1 875 455 236 72 53 chr4 38100709 38100861 -117529259 - Lx3C LINE L1 -2 6974 6820 1 875 2227 224 22 84 chr4 38100864 38101561 -117528559 - L1_Mur3 LINE L1 -1022 4858 4213 1 875 207 0 0 0 chr4 38101561 38101584 -117528536 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1 875 2227 224 22 84 chr4 38101584 38101651 -117528469 - L1_Mur3 LINE L1 -1668 4212 4141 1 875 24 0 0 0 chr4 38101663 38101687 -117528433 + AT_rich Low_complexity Low_complexity 1 24 0 1 875 430 167 14 0 chr4 38101716 38101788 -117528332 - RLTR33 LTR ERVK 0 678 606 1 875 743 214 23 6 chr4 38101785 38101959 -117528161 - RMER6D LTR ERVK -91 599 423 1 875 670 121 0 17 chr4 38102045 38102106 -117528014 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 1 875 1353 34 6 11 chr4 38102106 38102287 -117527833 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 875 670 121 0 17 chr4 38102287 38102343 -117527777 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 1 875 1663 213 30 33 chr4 38102343 38102364 -117527756 - RMER6D LTR ERVK -357 363 343 1 875 1227 67 6 11 chr4 38102364 38102545 -117527575 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 875 1663 213 30 33 chr4 38102545 38102887 -117527233 - RMER6D LTR ERVK -378 342 1 1 875 582 240 90 13 chr4 38102986 38103142 -117526978 + MTC LTR MaLR 1 168 -253 1 875 1537 229 0 9 chr4 38103142 38103482 -117526638 - L1_Mur2 LINE L1 -200 5677 5341 1 875 1226 250 11 203 chr4 38103482 38104009 -117526111 + RMER19C LTR ERVK 1 426 -185 1 875 3921 119 128 67 chr4 38104018 38104691 -117525429 - L1_Mus3 LINE L1 -29 6609 5849 1 875 1390 162 142 3 chr4 38104694 38104997 -117525123 - IAPLTR4 LTR ERVK 0 345 1 1 875 6658 136 8 1 chr4 38104998 38105609 -117524511 - L1_Mm LINE L1 -30 5853 5244 1 875 549 0 0 0 chr4 38105609 38105670 -117524450 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 875 6658 136 8 1 chr4 38105670 38106090 -117524030 - L1_Mm LINE L1 -640 5243 4816 1 875 560 253 184 39 chr4 38106114 38106348 -117523772 - RMER19A LTR ERVK -49 688 421 1 875 1214 184 40 0 chr4 38106385 38106684 -117523436 - L1_Mur3 LINE L1 -2555 3325 3015 1 875 302 323 15 56 chr4 38107263 38107460 -117522660 + L1_Mur2 LINE L1 889 1077 -6651 1 875 2800 184 32 2 chr4 38107481 38108065 -117522055 - L1_Mur2 LINE L1 -2048 3829 3228 1 875 12582 75 5 2 chr4 38110666 38112360 -117517760 + L1Md_F2 LINE L1 3887 5586 -297 1 875 6985 99 5 3 chr4 38112361 38113343 -117516777 + L1Md_F2 LINE L1 5588 6571 -11 1 875 4345 137 23 1 chr4 38113339 38114065 -117516055 + L1_Mus4 LINE L1 5893 6634 -2 1 875 765 196 26 21 chr4 38114107 38114373 -117515747 + L1_Mur2 LINE L1 1129 1395 -4482 1 875 470 218 7 101 chr4 38114373 38114398 -117515722 + MT2B LTR ERVL 140 151 -450 1 875 980 116 0 0 chr4 38114398 38114536 -117515584 + B1_Mus1 SINE Alu 1 138 -10 1 875 5716 211 50 21 chr4 38114550 38115189 -117514931 + L1_Mur2 LINE L1 1412 2054 -3823 1 875 369 0 0 0 chr4 38115189 38115230 -117514890 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 875 594 0 0 0 chr4 38115230 38115295 -117514825 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 875 5716 211 50 21 chr4 38115295 38115454 -117514666 + L1_Mur2 LINE L1 2055 2212 -3665 1 875 438 20 0 0 chr4 38115454 38115505 -117514615 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 875 5716 211 50 21 chr4 38115505 38116250 -117513870 + L1_Mur2 LINE L1 2213 3000 -2877 1 875 432 0 0 0 chr4 38116336 38116384 -117513736 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 875 272 49 0 47 chr4 38116408 38116451 -117513669 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1 875 27 62 0 0 chr4 38116574 38116622 -117513498 + AT_rich Low_complexity Low_complexity 1 48 0 1 875 514 298 35 0 chr4 38116653 38116767 -117513353 - RSINE1 SINE B4 -36 129 12 1 875 24 32 0 0 chr4 38116837 38116868 -117513252 + AT_rich Low_complexity Low_complexity 1 31 0 1 875 854 290 54 35 chr4 38117312 38117601 -117512519 - Lx9 LINE L1 -1598 6046 5715 1 875 447 63 0 0 chr4 38117601 38117664 -117512456 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 875 854 248 49 39 chr4 38117664 38117851 -117512269 - Lx9 LINE L1 -133 5714 5532 1 875 1106 288 17 17 chr4 38117969 38118322 -117511798 + Lx9 LINE L1 7112 7464 -180 1 875 1273 52 11 0 chr4 38118446 38118620 -117511500 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 875 949 160 6 6 chr4 38118643 38119132 -117510988 + CT-rich Low_complexity Low_complexity 1 489 0 1 875 650 195 7 0 chr4 38119133 38119217 -117510903 + polypyrimidine Low_complexity Low_complexity 69 152 0 1 875 1115 102 0 11 chr4 38119217 38119395 -117510725 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 875 650 195 7 0 chr4 38119395 38119459 -117510661 + polypyrimidine Low_complexity Low_complexity 4 68 0 1 875 206 91 61 0 chr4 38119459 38119492 -117510628 + CT-rich Low_complexity Low_complexity 1 35 0 1 875 928 151 0 11 chr4 38119492 38119604 -117510516 + polypyrimidine Low_complexity Low_complexity 69 180 0 1 875 1172 91 11 0 chr4 38119604 38119779 -117510341 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 875 928 151 0 11 chr4 38119779 38119847 -117510273 + polypyrimidine Low_complexity Low_complexity 2 68 0 1 875 1118 117 6 0 chr4 38119848 38120027 -117510093 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 875 842 176 11 0 chr4 38120046 38120222 -117509898 + CT-rich Low_complexity Low_complexity 3 180 0 1 875 1001 133 0 11 chr4 38120251 38120433 -117509687 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 875 376 104 15 15 chr4 38120437 38120505 -117509615 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 1 875 22 88 0 0 chr4 38120887 38120944 -117509176 + AT_rich Low_complexity Low_complexity 1 57 0 1 875 21 104 0 0 chr4 38121299 38121376 -117508744 + AT_rich Low_complexity Low_complexity 1 77 0 1 875 33 73 0 0 chr4 38121471 38121539 -117508581 + AT_rich Low_complexity Low_complexity 1 68 0 1 875 713 257 38 35 chr4 38123797 38124071 -117506049 + ORR1D2 LTR MaLR 1 358 -12 1 875 207 0 0 0 chr4 38124166 38124189 -117505931 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 875 4934 143 13 11 chr4 38124189 38125024 -117505096 - Lx3A LINE L1 -15 6966 6130 1 875 457 286 243 0 chr4 38125474 38125614 -117504506 + B3 SINE B2 1 174 -42 1 875 1046 241 74 19 chr4 38125640 38125965 -117504155 + Lx9 LINE L1 7302 7644 0 1 875 944 207 13 55 chr4 38127131 38127366 -117502754 + URR1B DNA MER1_type 1 225 0 1 875 413 348 60 11 chr4 38127549 38127732 -117502388 - ID_B1 SINE B4 -4 220 29 1 875 339 157 0 0 chr4 38128997 38129067 -117501053 + CT-rich Low_complexity Low_complexity 3 72 0 1 875 357 43 0 0 chr4 38129087 38129134 -117500986 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 875 6779 55 2 2 chr4 38129154 38130016 -117500104 + L1Md_F3 LINE L1 5721 6582 -2 2 875 2906 173 2 2 chr4 38130153 38130645 -117499475 - Lx2 LINE L1 -610 6387 5896 2 875 3164 178 37 13 chr4 38130645 38131266 -117498854 + Lx2B LINE L1 6362 6997 -3 2 875 1173 155 71 27 chr4 38132378 38132603 -117497517 + RMER6C LTR ERVK 4 238 -452 2 875 494 160 6 53 chr4 38132607 38132726 -117497394 + RMER6D LTR ERVK 564 756 0 2 875 40 59 0 0 chr4 38133709 38133777 -117496343 + AT_rich Low_complexity Low_complexity 1 68 0 2 875 1245 270 24 12 chr4 38134204 38134534 -117495586 - Lx6 LINE L1 -2 7458 7125 2 875 204 324 28 28 chr4 38134788 38134896 -117495224 - MIRb SINE MIR 0 268 161 2 875 723 334 28 11 chr4 38135039 38135319 -117494801 - MTEa LTR MaLR -2 377 93 2 875 6413 102 58 3 chr4 38135520 38136477 -117493643 - L1_Mus4 LINE L1 -7 6629 5620 2 875 3697 160 6 0 chr4 38136477 38137120 -117493000 + L1_Mur1 LINE L1 4961 5607 -279 2 875 4973 157 65 14 chr4 38137133 38138045 -117492075 - RMER17B LTR ERVK 0 958 1 2 875 287 357 21 21 chr4 38138583 38138772 -117491348 + B3A SINE B2 2 190 -8 2 875 189 0 0 0 chr4 38139256 38139277 -117490843 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 875 1663 154 18 62 chr4 38139366 38139706 -117490414 + ORR1A4 LTR MaLR 5 329 0 2 875 4749 255 59 23 chr4 38139973 38141497 -117488623 - Lx7 LINE L1 -604 7092 5490 2 876 923 17 17 0 chr4 38143194 38143310 -117486810 + (TCTCCC)n Simple_repeat Simple_repeat 4 121 0 2 876 376 61 0 57 chr4 38143310 38143380 -117486740 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 2 876 369 0 0 0 chr4 38143386 38143427 -117486693 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 876 363 326 77 8 chr4 38143496 38143626 -117486494 - B4A SINE B4 -126 166 28 2 876 205 167 0 59 chr4 38144614 38144665 -117485455 + GA-rich Low_complexity Low_complexity 6 53 0 2 876 641 292 146 35 chr4 38145064 38145616 -117484504 - L1MA5A LINE L1 -398 5899 5309 2 876 22 0 0 0 chr4 38145678 38145700 -117484420 + AT_rich Low_complexity Low_complexity 1 22 0 2 876 250 170 17 117 chr4 38145799 38145859 -117484261 + RMER15 LTR ERVL 1 54 -521 2 876 277 340 29 77 chr4 38147749 38147956 -117482164 + B3A SINE B2 2 198 0 2 876 1132 324 64 22 chr4 38148032 38148172 -117481948 - RMER1C Other Other -204 1138 1001 2 876 264 59 0 0 chr4 38148172 38148206 -117481914 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 876 1132 306 98 11 chr4 38148206 38148603 -117481517 - RMER1C Other Other -342 1000 616 2 876 21 71 0 0 chr4 38148738 38148780 -117481340 + AT_rich Low_complexity Low_complexity 1 42 0 2 876 7429 117 7 7 chr4 38150934 38152047 -117478073 + L1_Mm LINE L1 4609 5721 -162 2 876 4736 82 11 12 chr4 38152047 38152704 -117477416 + L1_Mus1 LINE L1 5912 6567 0 2 876 225 276 10 30 chr4 38152841 38152942 -117477178 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 876 236 163 0 39 chr4 38152874 38152925 -117477195 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2 876 906 110 0 0 chr4 38152992 38153156 -117476964 + (TG)n Simple_repeat Simple_repeat 1 164 0 2 876 395 358 14 10 chr4 38153221 38153430 -117476690 - B3 SINE B2 -4 212 3 2 876 2839 83 8 2 chr4 38153666 38154064 -117476056 - L1_Mus3 LINE L1 0 6638 6239 2 876 1131 142 4 7 chr4 38154064 38154271 -117475849 + L1_Mm LINE L1 5480 5712 -530 2 876 235 355 16 0 chr4 38154656 38154718 -117475402 + ID4 SINE ID 4 66 -17 2 876 787 295 34 55 chr4 38154838 38155129 -117474991 - ORR1D1 LTR MaLR -13 361 77 2 876 464 240 52 34 chr4 38155556 38155721 -117474399 - ORR1D1 LTR MaLR -204 180 14 2 876 4542 177 12 12 chr4 38155948 38156798 -117473322 - Lx2 LINE L1 -7 6990 6141 2 876 2452 229 74 25 chr4 38157466 38158210 -117471910 - L1_Mur3 LINE L1 -95 5785 5006 2 876 380 261 134 11 chr4 38158242 38158428 -117471692 + Lx9 LINE L1 7394 7602 -42 2 876 222 128 0 0 chr4 38158487 38158526 -117471594 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 876 22 80 0 0 chr4 38158542 38158592 -117471528 + AT_rich Low_complexity Low_complexity 1 50 0 2 876 212 314 29 19 chr4 38159374 38159478 -117470642 - L2 LINE L2 -557 2862 2758 2 876 21 36 0 0 chr4 38160018 38160046 -117470074 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 2054 99 10 7 chr4 38160525 38160831 -117469289 - L1Md_F2 LINE L1 -10 6572 6266 2 876 2452 65 0 0 chr4 38160831 38161140 -117468980 + L1Md_F2 LINE L1 5956 6264 -318 2 876 32296 87 3 22 chr4 38161518 38166913 -117463207 + L1Md_F2 LINE L1 298 5586 -297 2 876 7885 58 1 1 chr4 38166913 38167908 -117462212 + L1Md_F2 LINE L1 5587 6581 -1 2 876 229 36 35 52 chr4 38168200 38168258 -117461862 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 2 876 1003 88 0 14 chr4 38169054 38169193 -117460927 + B1_Mm SINE Alu 11 147 0 2 876 252 0 93 0 chr4 38169202 38169245 -117460875 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 876 465 328 79 32 chr4 38169322 38169511 -117460609 + B3A SINE B2 1 198 0 2 876 385 355 19 57 chr4 38169525 38169737 -117460383 - B3 SINE B2 -11 205 2 2 876 378 198 85 0 chr4 38169818 38169924 -117460196 + Lx6 LINE L1 7337 7451 -9 2 876 23 0 0 0 chr4 38170429 38170452 -117459668 + AT_rich Low_complexity Low_complexity 1 23 0 2 876 369 93 26 26 chr4 38170463 38170540 -117459580 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 2 876 21 0 0 0 chr4 38170643 38170664 -117459456 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 199 328 78 26 chr4 38172198 38172314 -117457806 - L2 LINE L2 -2515 904 783 2 876 30863 65 1 1 chr4 38172461 38177210 -117452910 - L1Md_F2 LINE L1 -12 6570 1824 2 876 538 146 0 0 chr4 38177210 38177292 -117452828 + L1Md_Gf LINE L1 256 337 -6282 2 876 4462 80 3 2 chr4 38177286 38178448 -117451672 + L1Md_Gf LINE L1 564 1822 -4064 2 876 201 182 0 0 chr4 38178838 38178871 -117451249 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 876 238 296 0 0 chr4 38179564 38179618 -117450502 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 2 876 27 29 0 0 chr4 38179640 38179674 -117450446 + AT_rich Low_complexity Low_complexity 1 34 0 2 876 201 74 0 0 chr4 38179737 38179764 -117450356 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 876 296 194 0 0 chr4 38179790 38179852 -117450268 + L1_Mur2 LINE L1 3507 3568 -2309 2 876 1023 267 77 44 chr4 38179920 38180510 -117449610 - RLTR18B LTR ERVK -83 533 1 2 876 32 0 0 0 chr4 38180771 38180803 -117449317 + AT_rich Low_complexity Low_complexity 1 32 0 2 876 562 220 16 11 chr4 38181205 38181350 -117448770 - Lx7 LINE L1 -1299 5759 5615 2 876 1291 208 24 82 chr4 38181354 38181695 -117448425 - ORR1A4 LTR MaLR -8 321 1 2 876 420 358 73 13 chr4 38181791 38182091 -117448029 + Lx7 LINE L1 6733 7050 -646 2 876 3532 115 11 0 chr4 38182113 38182643 -117447477 - L1_Mus2 LINE L1 -933 4950 4415 2 876 6806 107 25 7 chr4 38182626 38184231 -117445889 + L1_Mus2 LINE L1 4934 6566 0 2 876 868 313 21 18 chr4 38184268 38184601 -117445519 + Lx7 LINE L1 7051 7395 -78 2 876 319 304 37 74 chr4 38184665 38184800 -117445320 - RMER12 LTR ERVK -473 849 720 2 876 2276 172 15 7 chr4 38185845 38186249 -117443871 - Lx4A LINE L1 -3 7055 6649 2 876 438 255 11 0 chr4 38186249 38186343 -117443777 - RLTR20D LTR ERVK -2 566 472 2 876 4660 25 0 7 chr4 38186344 38186912 -117443208 - L1Md_A LINE L1 -2307 3576 3013 2 876 17799 12 0 0 chr4 38186911 38188951 -117441169 + L1Md_A LINE L1 3547 5586 -297 2 876 8550 22 2 0 chr4 38188952 38189945 -117440175 + L1Md_A LINE L1 5588 6582 0 2 876 9060 28 3 0 chr4 38189947 38191024 -117439096 + L1_Mm LINE L1 4431 5510 -373 2 876 626 285 44 147 chr4 38191024 38191100 -117439020 - RLTR20D LTR ERVK -37 514 455 2 876 8253 42 0 0 chr4 38191100 38192096 -117438024 + L1Md_T LINE L1 5587 6582 0 2 876 2609 185 9 5 chr4 38192096 38192565 -117437555 - RLTR20D LTR ERVK -96 472 3 2 876 1087 149 53 11 chr4 38192570 38192760 -117437360 - Lx4A LINE L1 -405 6653 6456 2 876 14719 157 27 14 chr4 38192759 38195264 -117434856 - Lx4A LINE L1 -1135 5923 3383 2 876 2266 69 116 14 chr4 38195264 38195618 -117434502 + RLTR10 LTR ERVK 1 390 0 2 876 14719 157 26 15 chr4 38195618 38195952 -117434168 - Lx4A LINE L1 -2495 3382 3046 2 876 551 165 9 0 chr4 38195952 38196061 -117434059 + CT-rich Low_complexity Low_complexity 4 113 0 2 876 4793 101 10 0 chr4 38196063 38196735 -117433385 - L1_Mus4 LINE L1 -280 6356 5678 2 876 1410 129 0 0 chr4 38196735 38196952 -117433168 - L1_Mus4 LINE L1 -366 5517 5301 2 876 1532 281 58 128 chr4 38197021 38197907 -117432213 - RMER17B LTR ERVK -134 824 1 2 876 1585 178 102 14 chr4 38197907 38198271 -117431849 - L1_Mur2 LINE L1 -580 5297 4902 2 876 4397 103 3 2 chr4 38198287 38198921 -117431199 + L1_Mus4 LINE L1 5996 6630 -6 2 876 6647 163 18 39 chr4 38198921 38199873 -117430247 - L1_Mur2 LINE L1 -2873 3004 2065 2 876 234 0 0 0 chr4 38199873 38199899 -117430221 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 876 6647 163 18 39 chr4 38199899 38200373 -117429747 - L1_Mur2 LINE L1 -3813 2064 1607 2 876 396 0 0 0 chr4 38200373 38200417 -117429703 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 876 474 18 0 0 chr4 38200417 38200471 -117429649 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 876 3260 180 92 7 chr4 38200496 38201260 -117428860 - L1_Mur2 LINE L1 -4498 1379 549 2 876 31 0 0 0 chr4 38201655 38201686 -117428434 + AT_rich Low_complexity Low_complexity 1 31 0 2 876 1056 317 103 2 chr4 38201852 38202260 -117427860 - Lx5 LINE L1 -525 6525 6077 2 876 2361 80 3 4 chr4 38202890 38203269 -117426851 + L1Md_A LINE L1 1157 1533 -4350 2 876 510 131 0 0 chr4 38203269 38203353 -117426767 + L1_Mus2 LINE L1 6483 6566 0 2 876 255 333 11 87 chr4 38203763 38203855 -117426265 + ID4 SINE ID 1 85 -67 2 876 447 272 44 0 chr4 38204018 38204176 -117425944 + L1_Mur3 LINE L1 97 261 -7451 2 876 2559 294 55 33 chr4 38204188 38205464 -117424656 + L1_Mur3 LINE L1 103 1164 -6548 2 876 2118 174 67 0 chr4 38205856 38206258 -117423862 - RMER19B LTR ERVK 0 902 474 2 876 292 359 0 0 chr4 38206440 38206557 -117423563 - L1_Mur3 LINE L1 -7527 185 69 2 876 280 341 11 11 chr4 38207067 38207159 -117422961 + B3 SINE B2 68 159 -57 2 876 450 0 0 0 chr4 38207159 38207209 -117422911 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 876 2102 90 0 17 chr4 38207213 38207507 -117422613 + L1_Mus2 LINE L1 6278 6566 0 2 876 408 352 78 26 chr4 38208038 38208344 -117421776 - Lx8 LINE L1 -216 7257 6936 2 876 826 324 24 12 chr4 38208621 38208952 -117421168 - Lx8 LINE L1 -797 6676 6342 2 876 24 0 0 0 chr4 38209529 38209553 -117420567 + AT_rich Low_complexity Low_complexity 1 24 0 2 876 793 333 60 9 chr4 38209554 38209926 -117420194 + MTD LTR MaLR 4 407 -12 3 876 28 29 0 0 chr4 38210093 38210128 -117419992 + AT_rich Low_complexity Low_complexity 1 35 0 3 876 360 265 30 20 chr4 38210174 38210274 -117419846 - Lx8 LINE L1 -705 6768 6668 3 876 426 250 305 103 chr4 38210282 38210632 -117419488 + L1_Mur3 LINE L1 1765 2189 -3691 3 876 1089 95 7 0 chr4 38210635 38210782 -117419338 + B1_Mus1 SINE Alu 1 148 0 3 876 261 22 21 42 chr4 38210791 38210839 -117419281 + (CAAAAA)n Simple_repeat Simple_repeat 5 51 0 3 876 1910 177 64 5 chr4 38211392 38211812 -117418308 + L1_Mur3 LINE L1 2253 2697 -3183 3 876 186 43 0 0 chr4 38211911 38211934 -117418186 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 876 1517 17 0 6 chr4 38212125 38212306 -117417814 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 876 966 18 0 0 chr4 38212309 38212421 -117417699 + (TTCTCC)n Simple_repeat Simple_repeat 3 114 0 3 876 5362 129 29 14 chr4 38212641 38213511 -117416609 - Lx LINE L1 -3 6651 5769 3 876 233 109 22 0 chr4 38213511 38213557 -117416563 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 876 195 42 0 0 chr4 38213720 38213744 -117416376 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3 876 672 218 17 69 chr4 38214360 38214563 -117415557 - RLTR21 LTR ERVK -2 1570 1275 3 876 4044 143 14 4 chr4 38214563 38215253 -117414867 - L1_Mus4 LINE L1 -15 6621 5925 3 876 891 133 0 20 chr4 38215253 38215406 -117414714 - RLTR21 LTR ERVK -1062 510 361 3 876 4879 79 8 8 chr4 38215695 38216356 -117413764 - L1Md_F2 LINE L1 -10 6572 5912 3 876 5689 60 3 0 chr4 38216356 38217078 -117413042 + L1Md_F2 LINE L1 5147 5870 -13 3 876 1665 225 60 3 chr4 38217078 38217430 -117412690 - RLTR21 LTR ERVK -1200 372 1 3 876 351 300 78 87 chr4 38217451 38217670 -117412450 - MLT1A0 LTR MaLR -28 337 121 3 876 492 18 0 0 chr4 38217742 38217799 -117412321 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 876 295 326 33 78 chr4 38217902 38218055 -117412065 + Tigger5 DNA MER2_type 40 185 -2221 3 876 497 366 60 11 chr4 38218053 38218423 -117411697 + Tigger5 DNA MER2_type 2018 2405 -1 3 876 22 35 0 0 chr4 38218788 38218817 -117411303 + AT_rich Low_complexity Low_complexity 1 29 0 3 876 236 241 36 0 chr4 38218906 38218989 -117411131 - LTR37B LTR ERV1 -4 464 379 3 876 895 87 39 8 chr4 38219028 38219156 -117410964 + B1_Mus1 SINE Alu 5 136 -12 3 876 180 0 0 0 chr4 38219156 38219176 -117410944 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 876 1079 131 0 0 chr4 38220069 38220222 -117409898 + B2_Mm2 SINE B2 2 154 -41 3 876 441 0 0 0 chr4 38220223 38220272 -117409848 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 876 579 165 0 0 chr4 38222939 38223048 -117407072 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 876 390 362 55 10 chr4 38223201 38223402 -117406718 - Lx8 LINE L1 -160 7313 7104 3 876 402 21 0 0 chr4 38223543 38223590 -117406530 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 876 238 229 121 0 chr4 38223747 38223830 -117406290 + Lx6 LINE L1 7368 7460 0 3 876 655 339 120 13 chr4 38223830 38224290 -117405830 - Lx9 LINE L1 -693 6951 6443 3 876 21 36 0 0 chr4 38224642 38224670 -117405450 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 600 111 0 0 chr4 38225039 38225129 -117404991 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 3 876 1700 192 6 11 chr4 38225129 38225492 -117404628 + L1_Mur3 LINE L1 3667 4027 -1853 3 876 720 258 85 9 chr4 38225494 38225705 -117404415 + L1_Mur3 LINE L1 5008 5234 -643 3 876 4899 266 76 26 chr4 38225863 38227339 -117402781 + Lx6 LINE L1 5901 7449 -11 3 876 33 0 0 0 chr4 38227387 38227420 -117402700 + AT_rich Low_complexity Low_complexity 1 33 0 3 876 325 346 34 0 chr4 38227510 38227715 -117402405 - Lx9 LINE L1 -179 7465 7254 3 876 8850 112 16 16 chr4 38227737 38229091 -117401029 - Lx3_Mus LINE L1 -4 7005 5651 3 876 2760 98 0 5 chr4 38229095 38229493 -117400627 + Lx3_Mus LINE L1 5251 5646 -240 3 876 793 194 102 9 chr4 38229988 38230075 -117400045 - Lx2B LINE L1 -135 6915 6747 3 876 386 88 0 14 chr4 38230075 38230144 -117399976 + (TGG)n Simple_repeat Simple_repeat 1 68 0 3 876 793 163 123 7 chr4 38230144 38230238 -117399882 - Lx2B LINE L1 -254 6746 6642 3 876 503 280 80 30 chr4 38230268 38230467 -117399653 - B3 SINE B2 0 216 8 3 876 313 304 139 34 chr4 38230503 38230769 -117399351 + L1ME1 LINE L1 1760 2053 -4347 3 876 25 0 0 0 chr4 38230950 38230975 -117399145 + AT_rich Low_complexity Low_complexity 1 25 0 3 876 1134 289 17 14 chr4 38231166 38231513 -117398607 + Lx6 LINE L1 7099 7446 -14 3 876 21 36 0 0 chr4 38231568 38231596 -117398524 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 283 353 0 0 chr4 38231803 38231919 -117398201 - L1_Mur1 LINE L1 -1299 4587 4472 3 876 353 293 51 47 chr4 38231945 38232160 -117397960 - L1M4 LINE L1 -2372 3774 3559 3 876 3537 167 61 18 chr4 38232224 38232949 -117397171 - RMER6A LTR ERVK 0 756 1 3 876 483 248 40 0 chr4 38232993 38233094 -117397026 + B1_Mus1 SINE Alu 34 138 -10 3 876 325 331 45 6 chr4 38233104 38233280 -117396840 + L1ME1 LINE L1 5291 5473 -846 3 876 301 267 45 15 chr4 38233298 38233431 -117396689 + L1ME1 LINE L1 5531 5667 -685 3 876 245 354 24 0 chr4 38234001 38234083 -117396037 + ORR1D2 LTR MaLR 282 365 -5 3 876 306 319 97 56 chr4 38234109 38234325 -117395795 + L1ME1 LINE L1 5978 6202 -150 3 876 217 306 40 27 chr4 38234490 38234564 -117395556 + PB1D7 SINE Alu 38 112 -8 3 876 441 97 0 0 chr4 38235189 38235261 -117394859 - L1_Mus2 LINE L1 -1 6565 6494 3 876 2162 229 113 30 chr4 38235712 38236338 -117393782 - RLTR33 LTR ERVK 0 678 1 3 876 22 70 0 0 chr4 38236935 38236978 -117393142 + AT_rich Low_complexity Low_complexity 1 43 0 3 876 1082 274 24 35 chr4 38237045 38237479 -117392641 + Lx9 LINE L1 5546 6006 -1638 3 876 789 275 43 4 chr4 38237493 38237723 -117392397 + Lx9 LINE L1 6306 6544 -1100 3 876 1098 237 53 27 chr4 38237731 38237843 -117392277 + MTC LTR MaLR 1 113 -308 3 876 248 0 31 0 chr4 38237843 38237875 -117392245 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 876 1098 237 53 27 chr4 38237875 38237970 -117392150 + MTC LTR MaLR 114 214 -207 3 876 2706 147 164 16 chr4 38237970 38238475 -117391645 - MT2B2 LTR ERVL 0 584 5 3 876 1098 237 53 27 chr4 38238475 38238565 -117391555 + MTC LTR MaLR 215 305 -116 3 876 521 366 35 50 chr4 38238779 38239121 -117390999 + Lx8 LINE L1 6208 6544 -929 3 876 635 361 72 26 chr4 38239212 38239826 -117390294 + Lx8 LINE L1 6674 7315 -158 3 876 2791 56 0 6 chr4 38240349 38240709 -117389411 + L1Md_F2 LINE L1 6225 6582 0 3 876 180 0 0 0 chr4 38240784 38240804 -117389316 + (TTA)n Simple_repeat Simple_repeat 3 22 0 3 876 246 62 0 0 chr4 38240923 38240955 -117389165 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 3 876 26 64 0 0 chr4 38241494 38241541 -117388579 + AT_rich Low_complexity Low_complexity 1 47 0 3 876 3480 63 11 7 chr4 38241971 38242431 -117387689 + L1Md_F3 LINE L1 6109 6570 -14 3 876 522 96 41 41 chr4 38243122 38243220 -117386900 + URR1A DNA MER1_type 67 164 -62 3 876 1482 247 38 38 chr4 38243222 38243613 -117386507 + ORR1B1 LTR MaLR 1 391 -3 3 876 285 182 36 0 chr4 38243616 38243671 -117386449 + URR1A DNA MER1_type 169 225 -1 3 876 1192 283 36 80 chr4 38243737 38244186 -117385934 + RLTR17 LTR ERVK 105 533 -159 3 876 549 381 0 0 chr4 38244376 38244552 -117385568 - MT2A LTR ERVL -105 428 253 3 876 241 279 0 0 chr4 38244653 38244721 -117385399 + L1M5 LINE L1 4496 4563 -1583 3 876 472 319 130 21 chr4 38244824 38245202 -117384918 + L1MD LINE L1 4641 5059 -1087 3 876 23 0 0 0 chr4 38245886 38245909 -117384211 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 229 338 0 0 chr4 38246187 38246258 -117383862 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 3 876 204 135 0 0 chr4 38246610 38246647 -117383473 + (CCCCCT)n Simple_repeat Simple_repeat 1 37 0 3 876 372 103 0 0 chr4 38246651 38246709 -117383411 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 876 503 259 175 17 chr4 38246851 38247091 -117383029 - RLTR40 LTR ERVK -16 801 524 3 876 310 272 102 16 chr4 38247578 38247705 -117382415 - RLTR40 LTR ERVK -435 382 245 3 876 2220 247 52 61 chr4 38247717 38248557 -117381563 + Lx9 LINE L1 6753 7585 -59 3 876 381 268 2 14 chr4 38248581 38248706 -117381414 - Lx7 LINE L1 -6 7690 7585 3 876 1121 272 53 60 chr4 38248725 38248956 -117381164 - Lx7 LINE L1 -47 7649 7438 3 876 324 0 0 0 chr4 38248956 38248992 -117381128 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 876 1121 272 53 60 chr4 38248992 38249323 -117380797 - Lx7 LINE L1 -259 7437 7092 3 876 753 106 0 0 chr4 38249379 38249492 -117380628 + (TAG)n Simple_repeat Simple_repeat 1 113 0 3 876 507 292 53 70 chr4 38249493 38249736 -117380384 - RLTR40 LTR ERVK -578 239 1 3 876 333 321 37 9 chr4 38249750 38249857 -117380263 - B1F SINE Alu -36 113 4 3 876 247 305 0 31 chr4 38249942 38250040 -117380080 + A-rich Low_complexity Low_complexity 5 99 0 3 876 272 412 17 0 chr4 38251283 38251402 -117378718 - B4A SINE B4 -169 123 3 3 876 24 0 0 0 chr4 38251651 38251675 -117378445 + AT_rich Low_complexity Low_complexity 1 24 0 3 876 22 35 0 0 chr4 38251717 38251746 -117378374 + AT_rich Low_complexity Low_complexity 1 29 0 3 876 22 99 0 0 chr4 38252021 38252092 -117378028 + AT_rich Low_complexity Low_complexity 1 71 0 3 876 26755 24 1 1 chr4 38252451 38256308 -117373812 - L1Md_T LINE L1 -4 6578 2723 3 876 360 325 134 13 chr4 38257078 38257309 -117372811 - L1M4c LINE L1 -3546 2833 2575 3 876 233 264 47 9 chr4 38257310 38257417 -117372703 - L1M4c LINE L1 -3960 2424 2314 3 876 27 29 0 0 chr4 38257610 38257644 -117372476 + AT_rich Low_complexity Low_complexity 1 34 0 3 876 309 203 15 15 chr4 38257765 38257830 -117372290 - MTD LTR MaLR 0 419 355 3 876 216 269 0 0 chr4 38258224 38258291 -117371829 + A-rich Low_complexity Low_complexity 4 70 0 3 876 249 83 0 0 chr4 38258308 38258344 -117371776 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 3 876 321 26 0 0 chr4 38258423 38258461 -117371659 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 876 2351 163 88 32 chr4 38259347 38259566 -117370554 + RMER6C LTR ERVK 1 302 -388 3 876 432 0 0 0 chr4 38259566 38259614 -117370506 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 876 2351 187 72 25 chr4 38259614 38259980 -117370140 + RMER6C LTR ERVK 303 690 0 3 876 3651 5 0 0 chr4 38260090 38260498 -117369622 + L1Md_A LINE L1 6175 6582 0 3 876 204 40 0 0 chr4 38260530 38260555 -117369565 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 876 21 36 0 0 chr4 38260656 38260684 -117369436 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 21 0 0 0 chr4 38262549 38262570 -117367550 + AT_rich Low_complexity Low_complexity 1 21 0 3 876 21 57 0 0 chr4 38262740 38262775 -117367345 + AT_rich Low_complexity Low_complexity 1 35 0 3 876 37874 30 0 0 chr4 38262807 38269253 -117360867 - L1Md_T LINE L1 0 6585 43 3 876 191 114 23 0 chr4 38269788 38269832 -117360288 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 3 876 1241 272 31 79 chr4 38270298 38270556 -117359564 - RLTR11A2 LTR ERVK 0 527 261 4 876 720 61 0 0 chr4 38270556 38270654 -117359466 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 4 876 1241 272 31 79 chr4 38270654 38270949 -117359171 - RLTR11A2 LTR ERVK -267 260 1 4 876 466 321 30 40 chr4 38271180 38271378 -117358742 + B3A SINE B2 3 198 0 4 876 318 296 0 0 chr4 38271427 38271515 -117358605 + Lx8 LINE L1 6536 6623 -850 4 876 3092 279 103 12 chr4 38271572 38272556 -117357564 - Lx6 LINE L1 0 7696 6356 4 109 3077 237 35 18 chr4 38272560 38273534 -117356586 + Lx6 LINE L1 5098 6106 -1354 4 877 1259 189 26 209 chr4 38273534 38274036 -117356084 - RMER17C LTR ERVK 0 410 1 4 877 2286 276 68 15 chr4 38274036 38274265 -117355855 + Lx6 LINE L1 6107 6344 -1116 4 877 1232 293 83 28 chr4 38274274 38274853 -117355267 + Lx8 LINE L1 6619 7229 -244 4 877 221 196 22 0 chr4 38275066 38275112 -117355008 + CT-rich Low_complexity Low_complexity 1 47 0 4 877 213 43 64 21 chr4 38275116 38275163 -117354957 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 877 251 287 46 15 chr4 38275171 38275302 -117354818 + Lx8 LINE L1 7337 7471 -2 4 877 322 303 9 18 chr4 38275690 38275801 -117354319 + RMER10B LTR ERVL 289 398 0 4 877 616 332 44 0 chr4 38276521 38276726 -117353394 - Lx8 LINE L1 -910 6563 6350 4 877 577 357 38 80 chr4 38276727 38277126 -117352994 + MTD LTR MaLR 2 383 -36 4 877 2067 107 10 3 chr4 38277126 38277426 -117352694 + Lx2A1 LINE L1 5589 5890 -1118 4 877 21 82 0 0 chr4 38277499 38277548 -117352572 + AT_rich Low_complexity Low_complexity 1 49 0 4 877 297 0 0 0 chr4 38277909 38277942 -117352178 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 877 33 25 0 0 chr4 38278861 38278901 -117351219 + AT_rich Low_complexity Low_complexity 1 40 0 4 877 22 80 0 0 chr4 38279084 38279134 -117350986 + AT_rich Low_complexity Low_complexity 1 50 0 4 877 515 352 51 20 chr4 38279226 38279423 -117350697 - B3 SINE B2 -6 210 8 4 877 474 88 0 0 chr4 38280097 38280165 -117349955 + (CGTG)n Simple_repeat Simple_repeat 1 68 0 4 877 184 250 153 0 chr4 38280452 38280524 -117349596 + L3 LINE CR1 2333 2415 -2074 4 877 312 335 119 8 chr4 38280693 38280946 -117349174 - L1MC LINE L1 -1213 4933 4653 4 877 204 111 0 0 chr4 38282251 38282287 -117347833 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 877 1847 72 0 4 chr4 38282548 38282786 -117347334 + L1_Mus1 LINE L1 6331 6567 0 4 877 21 0 0 0 chr4 38282786 38282807 -117347313 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 348 186 0 0 chr4 38282863 38282922 -117347198 - B4 SINE B4 -13 279 221 4 877 6342 101 43 13 chr4 38282922 38283916 -117346204 - Lx3_Mus LINE L1 -3 7006 5983 4 877 1325 164 4 4 chr4 38284028 38284261 -117345859 - Lx2 LINE L1 0 6997 6765 4 877 9542 171 19 7 chr4 38284261 38286816 -117343304 - Lx2 LINE L1 -363 6634 4048 4 877 771 219 6 0 chr4 38286813 38286982 -117343138 - Lx2 LINE L1 -1985 3898 3729 4 877 32968 59 9 7 chr4 38286983 38289191 -117340929 - L1Md_T LINE L1 -2 6580 4371 4 877 4050 30 17 0 chr4 38289191 38289665 -117340455 + LTRIS_Mm LTR ERV1 1 482 0 4 877 32968 77 17 7 chr4 38289665 38292073 -117338047 - L1Md_T LINE L1 -1513 4370 1978 4 877 201 39 0 0 chr4 38292073 38292099 -117338021 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 877 32968 145 51 14 chr4 38292099 38293776 -117336344 - L1Md_T LINE L1 -3906 1977 207 4 877 2370 128 35 2 chr4 38293768 38294286 -117335834 - L1VL4 LINE L1 -2507 1052 408 4 877 1695 305 70 32 chr4 38295104 38295823 -117334297 + Lx9 LINE L1 6432 7177 -467 4 877 225 94 0 0 chr4 38295824 38295856 -117334264 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 4 877 276 155 0 0 chr4 38296389 38296460 -117333660 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 877 315 113 0 0 chr4 38296468 38296521 -117333599 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 877 23 78 0 0 chr4 38296639 38296690 -117333430 + AT_rich Low_complexity Low_complexity 1 51 0 4 877 955 295 95 33 chr4 38296928 38297509 -117332611 + BLACKJACK DNA AcHobo 1904 2520 -424 4 877 6582 52 1 2 chr4 38298741 38299570 -117330550 + L1Md_F2 LINE L1 5750 6577 -5 4 877 215 0 67 0 chr4 38299576 38299606 -117330514 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 4 877 2064 209 81 48 chr4 38300196 38300463 -117329657 - RMER6C LTR ERVK -38 652 382 4 877 186 43 0 0 chr4 38300463 38300486 -117329634 + (AACTG)n Simple_repeat Simple_repeat 2 24 0 4 877 2064 209 81 48 chr4 38300486 38300547 -117329573 - RMER6C LTR ERVK -309 381 331 4 877 672 13 0 0 chr4 38300547 38300624 -117329496 + (TC)n Simple_repeat Simple_repeat 1 77 0 4 877 2064 209 81 48 chr4 38300624 38300784 -117329336 - RMER6C LTR ERVK -360 330 165 4 877 1060 87 0 0 chr4 38300784 38300922 -117329198 + B1_Mus2 SINE Alu 2 139 -8 4 877 238 26 51 0 chr4 38300922 38300961 -117329159 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 877 2064 209 81 48 chr4 38300961 38301098 -117329022 - RMER6C LTR ERVK -526 164 4 4 877 441 259 33 47 chr4 38301099 38301249 -117328871 - Lx6 LINE L1 -1260 6200 6053 4 877 1262 80 0 0 chr4 38301501 38301664 -117328456 + L1Md_F2 LINE L1 5423 5585 -298 4 877 8034 49 0 1 chr4 38301665 38302650 -117327470 + L1Md_F2 LINE L1 5587 6570 -12 4 877 316 0 45 0 chr4 38303084 38303128 -117326992 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 877 26 30 0 0 chr4 38303148 38303181 -117326939 + AT_rich Low_complexity Low_complexity 1 33 0 4 877 318 431 0 0 chr4 38303991 38304135 -117325985 + RSINE1 SINE B4 12 155 -10 4 877 6921 104 18 2 chr4 38304209 38305118 -117325002 - L1_Mus4 LINE L1 -7 6629 5712 4 877 234 0 0 0 chr4 38305118 38305144 -117324976 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 877 6921 104 18 2 chr4 38305144 38305230 -117324890 - L1_Mus4 LINE L1 -925 5711 5619 4 877 6751 124 21 6 chr4 38306001 38307064 -117323056 + Lx3A LINE L1 5890 6968 -13 4 877 779 117 8 0 chr4 38307488 38307616 -117322504 + Lx2 LINE L1 6867 6995 -2 4 877 1400 239 198 24 chr4 38307934 38308440 -117321680 - RMER19B LTR ERVK 0 902 309 4 877 21 95 0 0 chr4 38308856 38308919 -117321201 + AT_rich Low_complexity Low_complexity 1 63 0 4 877 2410 222 109 40 chr4 38309349 38310145 -117319975 - Lx9 LINE L1 -1 7643 6793 4 877 864 285 37 7 chr4 38310215 38310484 -117319636 + Lx9 LINE L1 6524 6800 -844 4 877 5655 82 0 1 chr4 38310487 38311411 -117318709 + L1_Mus3 LINE L1 5391 6314 -324 4 877 2055 158 21 5 chr4 38311402 38311778 -117318342 + L1_Mm LINE L1 4492 4873 -1010 4 877 441 383 12 29 chr4 38311974 38312216 -117317904 - B4 SINE B4 -52 240 3 4 877 225 277 0 0 chr4 38312974 38313039 -117317081 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 877 6794 73 5 25 chr4 38314131 38315086 -117315034 - L1_Mus2 LINE L1 0 6566 5659 4 877 226 292 42 0 chr4 38316372 38316444 -117313676 + L1ME3A LINE L1 6080 6154 -19 4 877 539 237 43 14 chr4 38316576 38316717 -117313403 - B3 SINE B2 -8 208 64 4 877 354 370 107 44 chr4 38316794 38317111 -117313009 - ORR1E LTR MaLR -19 340 4 4 877 448 357 25 50 chr4 38317094 38317136 -117312984 - ORR1E-int LTR MaLR -33 1547 1506 4 877 432 0 0 0 chr4 38317136 38317184 -117312936 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 4 877 448 357 25 50 chr4 38317184 38317424 -117312696 - ORR1E-int LTR MaLR -75 1505 1272 4 877 215 95 48 0 chr4 38317621 38317663 -117312457 + (TATG)n Simple_repeat Simple_repeat 1 44 0 4 877 373 19 0 36 chr4 38317668 38317724 -117312396 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 877 1554 207 85 11 chr4 38317992 38318368 -117311752 + RLTR26 LTR ERVK 1 404 -238 4 877 450 198 11 0 chr4 38318392 38318483 -117311637 + RLTR26 LTR ERVK 551 642 0 4 877 356 385 65 29 chr4 38318698 38318944 -117311176 - ORR1E-int LTR MaLR -1061 519 265 4 877 333 68 0 0 chr4 38318945 38318989 -117311131 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 877 328 330 10 0 chr4 38319033 38319133 -117310987 - B3A SINE B2 -89 109 9 4 877 267 31 0 0 chr4 38319147 38319179 -117310941 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 877 485 282 43 140 chr4 38319491 38319726 -117310394 - RLTR23 LTR ERV1 -21 409 198 4 877 29 28 0 0 chr4 38321113 38321149 -117308971 + AT_rich Low_complexity Low_complexity 1 36 0 4 877 343 198 64 28 chr4 38321938 38322047 -117308073 - Lx8 LINE L1 -7 7466 7354 4 877 1380 304 64 15 chr4 38322075 38322546 -117307574 - Lx8 LINE L1 -211 7262 6769 4 877 270 95 0 0 chr4 38322755 38322797 -117307323 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 877 270 0 0 0 chr4 38322828 38322858 -117307262 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 877 742 206 7 189 chr4 38323367 38323642 -117306478 + URR1B DNA MER1_type 1 225 0 4 877 396 356 93 33 chr4 38323970 38324244 -117305876 - B4A SINE B4 -7 285 1 4 877 21 0 0 0 chr4 38324260 38324281 -117305839 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 241 284 37 128 chr4 38325147 38325256 -117304864 - MTD LTR MaLR -159 260 162 4 877 1066 136 17 22 chr4 38325309 38325489 -117304631 - B2_Mm2 SINE B2 -15 180 2 4 877 258 317 17 51 chr4 38325501 38325677 -117304443 - RLTR15 LTR ERVK -145 214 45 4 877 660 236 16 0 chr4 38325918 38326045 -117304075 - RLTR25B LTR ERVK -2 1026 898 4 877 271 182 36 0 chr4 38326069 38326124 -117303996 - RLTR25B LTR ERVK -262 766 710 4 877 185 224 17 0 chr4 38326129 38326187 -117303933 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 877 23 68 0 0 chr4 38326198 38326242 -117303878 + AT_rich Low_complexity Low_complexity 1 44 0 4 877 249 163 0 0 chr4 38326415 38326464 -117303656 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 877 337 331 90 26 chr4 38326601 38326756 -117303364 + B4 SINE B4 79 243 -49 4 877 505 40 13 26 chr4 38326774 38326851 -117303269 + (CATA)n Simple_repeat Simple_repeat 3 78 0 4 877 266 176 35 12 chr4 38326878 38326964 -117303156 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 877 405 164 0 0 chr4 38327012 38327085 -117303035 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 4 877 26 30 0 0 chr4 38327150 38327183 -117302937 + AT_rich Low_complexity Low_complexity 1 33 0 4 877 23 33 0 0 chr4 38327225 38327255 -117302865 + AT_rich Low_complexity Low_complexity 1 30 0 4 877 27 0 0 0 chr4 38327662 38327689 -117302431 + AT_rich Low_complexity Low_complexity 1 27 0 4 877 4166 274 31 46 chr4 38327956 38328184 -117301936 + Lx7 LINE L1 6072 6292 -1404 4 877 1157 68 0 0 chr4 38328184 38328331 -117301789 + B1_Mm SINE Alu 1 147 0 4 877 4166 274 31 46 chr4 38328331 38329463 -117300657 + Lx7 LINE L1 6293 7411 -285 4 877 1876 121 31 6 chr4 38330230 38330542 -117299578 + Lx3_Mus LINE L1 6276 6591 -409 4 877 429 122 14 0 chr4 38330542 38330616 -117299504 - MMERGLN-int LTR ERV1 -2502 1196 1122 4 877 929 200 74 37 chr4 38330774 38331018 -117299102 - MMERGLN-int LTR ERV1 -2523 776 524 4 877 1027 225 97 61 chr4 38331281 38331900 -117298220 - MMERGLN-int LTR ERV1 -6933 623 2 4 877 2008 157 62 72 chr4 38331902 38332411 -117297709 - RLTR1C LTR ERV1 0 605 1 4 877 4653 68 85 87 chr4 38332411 38333011 -117297109 - L1Md_F2 LINE L1 -352 5531 4880 4 877 235 153 62 92 chr4 38333011 38333076 -117297044 + RMER20A LTR ERVK 186 248 -268 4 877 4653 68 85 87 chr4 38333076 38333197 -117296923 - L1Md_F2 LINE L1 -352 4879 4747 4 877 7572 61 7 5 chr4 38333193 38334216 -117295904 + L1Md_F2 LINE L1 5538 6561 -21 4 877 2267 267 96 45 chr4 38334432 38335217 -117294903 + RMER1C Other Other 516 1340 -2 5 877 1239 252 110 11 chr4 38335477 38335950 -117294170 + Lx9 LINE L1 6993 7512 -132 5 877 186 43 0 0 chr4 38335951 38335974 -117294146 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 877 22 35 0 0 chr4 38336113 38336142 -117293978 + AT_rich Low_complexity Low_complexity 1 29 0 5 877 1139 288 114 24 chr4 38336844 38337307 -117292813 - Lx8 LINE L1 -10 7463 6959 5 877 258 193 0 0 chr4 38337312 38337369 -117292751 + (TGG)n Simple_repeat Simple_repeat 2 58 0 5 877 294 331 84 7 chr4 38337390 38337545 -117292575 - Lx8 LINE L1 -530 6943 6777 5 877 1050 103 21 0 chr4 38337754 38337899 -117292221 - B1_Mus1 SINE Alu 0 148 1 5 877 340 336 70 8 chr4 38338100 38338229 -117291891 + B1_Mur3 SINE Alu 1 137 -12 5 877 231 61 82 0 chr4 38339023 38339072 -117291048 + (TTATA)n Simple_repeat Simple_repeat 1 53 0 5 877 190 29 28 56 chr4 38339211 38339247 -117290873 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 877 1919 62 0 15 chr4 38339267 38339528 -117290592 - L1Md_F2 LINE L1 0 6582 6326 5 877 36 40 0 0 chr4 38339755 38339805 -117290315 + AT_rich Low_complexity Low_complexity 1 50 0 5 877 1208 198 90 24 chr4 38339965 38340255 -117289865 - ORR1B2 LTR MaLR -1 366 58 5 877 1287 228 59 10 chr4 38340247 38340552 -117289568 - ORR1B2-int LTR MaLR -1189 320 1 5 877 1510 222 69 35 chr4 38340560 38340906 -117289214 - ORR1B2 LTR MaLR -9 358 1 5 877 237 103 0 0 chr4 38341612 38341639 -117288481 + (T)n Simple_repeat Simple_repeat 1 27 0 5 877 1094 85 0 0 chr4 38341639 38341780 -117288340 - B1_Mus2 SINE Alu -6 141 1 5 877 5059 124 25 1 chr4 38341780 38342582 -117287538 - L1_Mus2 LINE L1 0 6566 5757 5 877 1044 242 0 0 chr4 38342583 38342831 -117287289 - L1_Mur3 LINE L1 -897 4983 4736 5 877 206 214 24 0 chr4 38343197 38343239 -117286881 + GA-rich Low_complexity Low_complexity 3 45 0 5 877 192 40 0 0 chr4 38344990 38345015 -117285105 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 5 877 210 91 0 0 chr4 38345949 38345982 -117284138 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 877 351 42 63 2 chr4 38345982 38346045 -117284075 - B1_Mm SINE Alu 0 147 80 5 877 233 102 68 0 chr4 38346263 38346322 -117283798 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 877 186 43 0 0 chr4 38346459 38346482 -117283638 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 5 877 195 114 0 0 chr4 38346546 38346581 -117283539 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 877 31 0 0 0 chr4 38346927 38346958 -117283162 + AT_rich Low_complexity Low_complexity 1 31 0 5 877 446 231 165 33 chr4 38346971 38347092 -117283028 - B1_Mur4 SINE Alu 0 150 14 5 877 212 171 51 26 chr4 38347106 38347184 -117282936 + (TATAA)n Simple_repeat Simple_repeat 3 82 0 5 877 259 202 0 25 chr4 38347190 38347271 -117282849 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 877 189 0 0 0 chr4 38347271 38347292 -117282828 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 877 8880 119 19 5 chr4 38347422 38349050 -117281070 + Lx3A LINE L1 5316 6968 -13 5 877 24 32 0 0 chr4 38349050 38349081 -117281039 + AT_rich Low_complexity Low_complexity 1 31 0 5 877 38405 5 0 0 chr4 38349081 38354435 -117275685 + L1Md_A LINE L1 232 5586 -297 5 877 9023 2 0 0 chr4 38354435 38355431 -117274689 + L1Md_A LINE L1 5587 6582 0 5 877 994 203 96 136 chr4 38356238 38356665 -117273455 + RMER17C LTR ERVK 1 410 0 5 877 250 303 40 0 chr4 38357321 38357397 -117272723 - B3A SINE B2 -119 79 1 5 877 690 330 62 78 chr4 38357433 38357818 -117272302 - MTE2a LTR MaLR 0 379 1 5 877 183 217 0 0 chr4 38357852 38357912 -117272208 + GA-rich Low_complexity Low_complexity 2 61 0 5 877 210 147 0 0 chr4 38357936 38357970 -117272150 + (ATG)n Simple_repeat Simple_repeat 3 36 0 5 877 24 53 0 0 chr4 38358851 38358889 -117271231 + AT_rich Low_complexity Low_complexity 1 38 0 5 877 243 328 8 39 chr4 38358950 38359080 -117271040 + Lx6 LINE L1 7311 7436 -24 5 877 765 297 142 18 chr4 38359093 38359374 -117270746 - Lx5 LINE L1 -4 7046 6731 5 877 369 244 11 34 chr4 38359376 38359465 -117270655 - MT2A LTR ERVL -316 217 131 5 877 1513 266 14 0 chr4 38359468 38359817 -117270303 + Lx5 LINE L1 6464 6817 -233 5 877 3868 151 21 14 chr4 38359817 38360523 -117269597 - L1_Mur2 LINE L1 -1669 4208 3505 5 877 4126 141 66 25 chr4 38361264 38361989 -117268131 - Lx3B LINE L1 0 6973 6219 5 877 249 57 0 0 chr4 38362506 38362541 -117267579 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 877 261 380 29 0 chr4 38363309 38363446 -117266674 - MER20 DNA MER1_type -39 180 40 5 877 229 359 45 22 chr4 38363948 38364082 -117266038 - MER5B DNA MER1_type -21 157 21 5 877 28 93 0 17 chr4 38365273 38365348 -117264772 + AT_rich Low_complexity Low_complexity 1 75 0 5 877 1144 82 0 0 chr4 38365348 38365495 -117264625 - B1_Mus2 SINE Alu 0 147 1 5 877 28 93 0 17 chr4 38365495 38365539 -117264581 + AT_rich Low_complexity Low_complexity 1 43 0 5 877 243 0 0 0 chr4 38365642 38365669 -117264451 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 877 634 329 4 9 chr4 38365691 38365918 -117264202 - Lx9 LINE L1 -203 7441 7216 5 877 1410 272 27 60 chr4 38365932 38366090 -117264030 + Lx9 LINE L1 6687 6845 -799 5 877 1397 206 83 0 chr4 38366090 38366391 -117263729 - ORR1A4 LTR MaLR -2 327 2 5 877 1410 272 27 60 chr4 38366391 38366556 -117263564 + Lx9 LINE L1 6846 7011 -633 5 877 429 20 0 0 chr4 38366556 38366606 -117263514 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 877 1410 272 27 60 chr4 38366606 38366798 -117263322 + Lx9 LINE L1 7012 7186 -458 5 877 242 56 28 0 chr4 38367169 38367205 -117262915 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 5 877 3728 182 40 18 chr4 38367436 38368264 -117261856 + Lx5 LINE L1 4069 4914 -963 5 877 5086 202 51 6 chr4 38368251 38369643 -117260477 + Lx5 LINE L1 5315 6795 -255 5 877 594 41 0 0 chr4 38369643 38369716 -117260404 + (TTTTC)n Simple_repeat Simple_repeat 4 76 0 5 877 23 0 0 0 chr4 38369933 38369956 -117260164 + AT_rich Low_complexity Low_complexity 1 23 0 5 877 282 228 98 73 chr4 38369972 38370095 -117260025 - RMER16-int LTR ERVK -30 5376 5251 5 877 361 292 18 12 chr4 38370357 38370520 -117259600 + RMER16-int LTR ERVK 4826 4989 -417 5 877 971 257 8 24 chr4 38370565 38370812 -117259308 + Lx5 LINE L1 6811 7053 -5 5 877 365 281 49 61 chr4 38371186 38371349 -117258771 - MTE2a LTR MaLR -14 365 205 5 877 207 0 0 0 chr4 38371369 38371392 -117258728 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 877 909 341 85 38 chr4 38371435 38371630 -117258490 - MTE-int LTR MaLR -1051 529 328 5 877 2143 166 25 5 chr4 38371630 38372024 -117258096 + RLTR9D LTR ERVK 1 402 -1 5 877 909 341 85 38 chr4 38372024 38372333 -117257787 - MTE-int LTR MaLR -1253 327 2 5 877 597 209 0 9 chr4 38372596 38372712 -117257408 + B3 SINE B2 2 116 -100 5 877 479 60 0 15 chr4 38372746 38372814 -117257306 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 5 877 396 365 28 34 chr4 38372832 38373085 -117257035 - ORR1E LTR MaLR -114 256 12 5 877 417 311 59 59 chr4 38373350 38373640 -117256480 + MLT2D LTR ERVL 1 290 -124 5 877 496 96 0 0 chr4 38373788 38373861 -117256259 + B1_Mus2 SINE Alu 75 147 0 5 877 1695 110 4 8 chr4 38374631 38374888 -117255232 - IAPLTR1a_Mm LTR ERVK -81 256 1 5 877 24 53 0 0 chr4 38375876 38375914 -117254206 + AT_rich Low_complexity Low_complexity 1 38 0 5 877 1087 187 5 271 chr4 38376461 38376654 -117253466 + RLTR25B LTR ERVK 1 110 -918 5 877 604 74 11 0 chr4 38376654 38376749 -117253371 + L1_Mus2 LINE L1 6471 6566 0 5 877 1087 187 5 271 chr4 38376749 38376943 -117253177 + RLTR25B LTR ERVK 111 285 -743 5 877 279 0 0 0 chr4 38376997 38377028 -117253092 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 877 1076 73 15 0 chr4 38377028 38377165 -117252955 - B1_Mus2 SINE Alu -8 139 1 5 877 28341 146 21 11 chr4 38377208 38382164 -117247956 + L1_Mus2 LINE L1 418 5501 -382 5 877 3351 189 30 59 chr4 38382164 38383045 -117247075 + RLTR13A LTR ERVK 1 855 0 5 877 28341 98 14 2 chr4 38383045 38384104 -117246016 + L1_Mus2 LINE L1 5502 6566 0 5 877 3584 137 16 38 chr4 38384124 38384760 -117245360 + L1_Mus2 LINE L1 5943 6564 -2 5 877 2502 194 64 24 chr4 38384780 38385441 -117244679 + RLTR25B LTR ERVK 270 1028 0 5 877 1534 269 82 19 chr4 38386074 38386589 -117243531 + RMER15 LTR ERVL 29 575 0 5 877 25 51 0 0 chr4 38386621 38386660 -117243460 + AT_rich Low_complexity Low_complexity 1 39 0 5 877 21 0 0 0 chr4 38387153 38387174 -117242946 + AT_rich Low_complexity Low_complexity 1 21 0 5 877 409 202 102 117 chr4 38387313 38387509 -117242611 - B3 SINE B2 -1 194 2 5 877 204 40 0 0 chr4 38387543 38387568 -117242552 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 5 877 863 294 59 25 chr4 38387621 38387942 -117242178 + Lx6 LINE L1 6548 6879 -581 5 877 24 32 0 0 chr4 38389438 38389469 -117240651 + AT_rich Low_complexity Low_complexity 1 31 0 5 877 498 301 101 18 chr4 38389628 38390014 -117240106 - L1M3 LINE L1 -1904 3973 3560 5 877 1046 319 112 28 chr4 38390030 38390846 -117239274 + L1M2 LINE L1 4073 4977 -1166 5 877 204 40 0 0 chr4 38390846 38390871 -117239249 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 877 1046 319 112 28 chr4 38390871 38391209 -117238911 + L1M2 LINE L1 4978 5323 -820 5 877 38 22 0 0 chr4 38391340 38391385 -117238735 + AT_rich Low_complexity Low_complexity 1 45 0 5 877 450 94 0 0 chr4 38391451 38391515 -117238605 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 877 527 278 23 40 chr4 38391699 38391843 -117238277 - RLTR42-int LTR ERVK -1097 4425 4283 5 877 794 223 109 0 chr4 38391843 38392045 -117238075 + URR1B DNA MER1_type 2 225 0 5 877 527 278 23 40 chr4 38392045 38392076 -117238044 - RLTR42-int LTR ERVK -1240 4282 4253 5 877 26 30 0 0 chr4 38392342 38392375 -117237745 + AT_rich Low_complexity Low_complexity 1 33 0 5 877 31 82 0 0 chr4 38392586 38392659 -117237461 + AT_rich Low_complexity Low_complexity 1 73 0 5 877 441 0 0 0 chr4 38393490 38393539 -117236581 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 877 308 98 33 0 chr4 38393851 38393912 -117236208 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 877 268 329 14 0 chr4 38394022 38394095 -117236025 - B4A SINE B4 -207 85 12 5 877 864 114 0 0 chr4 38394625 38394756 -117235364 + (TTC)n Simple_repeat Simple_repeat 1 131 0 5 877 236 231 15 44 chr4 38394756 38394824 -117235296 + C-rich Low_complexity Low_complexity 3 68 0 5 877 1639 348 54 15 chr4 38394827 38395637 -117234483 - Lx8 LINE L1 -60 7413 6582 6 877 995 279 63 44 chr4 38395637 38396000 -117234120 - ORR1D2 LTR MaLR 0 370 1 6 877 1639 348 54 15 chr4 38396000 38396108 -117234012 - Lx8 LINE L1 -892 6581 6459 6 877 1284 344 42 49 chr4 38396265 38396485 -117233635 + Lx8 LINE L1 6575 6789 -684 6 877 2451 87 28 11 chr4 38396485 38396846 -117233274 - L1Md_F2 LINE L1 -2 6580 6214 6 877 1284 344 42 49 chr4 38396846 38397116 -117233004 + Lx8 LINE L1 6790 7048 -425 6 877 181 0 0 65 chr4 38397116 38397147 -117232973 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 6 877 1284 344 42 49 chr4 38397147 38397395 -117232725 + Lx8 LINE L1 7049 7309 -164 6 877 321 26 0 0 chr4 38397781 38397819 -117232301 + (CAG)n Simple_repeat Simple_repeat 1 38 0 6 877 1675 287 178 22 chr4 38399140 38400015 -117230105 + Lx9 LINE L1 6364 7374 -270 6 877 330 67 0 0 chr4 38400109 38400154 -117229966 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 877 602 164 0 8 chr4 38400283 38400406 -117229714 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 877 752 183 0 11 chr4 38400429 38400611 -117229509 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 877 241 291 23 45 chr4 38401020 38401153 -117228967 + L1M2 LINE L1 3711 3840 -2303 6 877 1596 72 9 13 chr4 38401265 38401489 -117228631 - L1_Mus2 LINE L1 0 6566 6344 6 877 1650 242 52 88 chr4 38402115 38402423 -117227697 - RLTR20B3 LTR ERVK -14 563 259 6 877 2011 35 54 4 chr4 38402423 38402683 -117227437 + L1Md_F3 LINE L1 6312 6584 0 6 877 1650 242 52 88 chr4 38402683 38402954 -117227166 - RLTR20B3 LTR ERVK -319 258 5 6 877 298 368 34 11 chr4 38403083 38403259 -117226861 - B3A SINE B2 -15 183 4 6 877 567 144 0 0 chr4 38403320 38403417 -117226703 + (CA)n Simple_repeat Simple_repeat 2 98 0 6 878 2621 185 18 0 chr4 38404624 38405122 -117224998 - L1_Mm LINE L1 -920 4963 4457 6 878 2524 172 45 14 chr4 38405123 38405197 -117224923 + L1_Mur2 LINE L1 4931 5004 -873 6 878 2141 56 20 14 chr4 38405197 38405489 -117224631 + L1Md_F3 LINE L1 6290 6583 -1 6 878 2524 172 45 14 chr4 38405489 38405899 -117224221 + L1_Mur2 LINE L1 5005 5430 -447 6 878 2471 97 3 0 chr4 38405897 38406246 -117223874 + Lx LINE L1 5653 6002 -652 6 878 304 273 12 175 chr4 38406487 38406647 -117223473 + MTEa LTR MaLR 5 138 -241 6 878 227 305 85 65 chr4 38406647 38406687 -117223433 + MLT2B3 LTR ERVL 5 208 -346 6 878 204 111 0 0 chr4 38407228 38407264 -117222856 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 878 497 350 86 80 chr4 38407357 38407730 -117222390 + MTEa LTR MaLR 3 377 -2 6 878 212 220 0 20 chr4 38408531 38408582 -117221538 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 878 314 348 25 83 chr4 38408657 38408898 -117221222 - RMER15 LTR ERVL -13 562 336 6 878 420 37 0 0 chr4 38409178 38409232 -117220888 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 878 27 49 0 0 chr4 38409383 38409424 -117220696 + AT_rich Low_complexity Low_complexity 1 41 0 6 878 240 261 58 0 chr4 38410076 38410145 -117219975 + Lx9 LINE L1 7352 7424 -220 6 878 222 159 0 22 chr4 38410148 38410193 -117219927 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 878 5422 120 54 96 chr4 38410330 38411356 -117218764 + RLTR13C1 LTR ERVK 1 983 0 6 878 21 36 0 0 chr4 38411728 38411756 -117218364 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 434 129 12 0 chr4 38411761 38411846 -117218274 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 878 21 0 0 0 chr4 38411950 38411971 -117218149 + AT_rich Low_complexity Low_complexity 1 21 0 6 878 999 301 24 3 chr4 38413378 38413714 -117216406 - L1_Mur3 LINE L1 -7115 597 255 6 878 333 262 34 41 chr4 38413685 38413832 -117216288 + Lx7 LINE L1 7396 7541 -155 6 878 225 0 0 0 chr4 38413843 38413868 -117216252 + (TATAA)n Simple_repeat Simple_repeat 1 25 0 6 878 27 29 0 0 chr4 38413868 38413902 -117216218 + AT_rich Low_complexity Low_complexity 1 34 0 6 878 357 24 0 0 chr4 38413912 38413954 -117216166 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 6 878 227 56 56 0 chr4 38414156 38414192 -117215928 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 6 878 46 54 0 0 chr4 38414238 38414312 -117215808 + AT_rich Low_complexity Low_complexity 1 74 0 6 878 23 0 0 0 chr4 38415157 38415180 -117214940 + AT_rich Low_complexity Low_complexity 1 23 0 6 878 2372 207 11 10 chr4 38416065 38416705 -117213415 - Lx5 LINE L1 -1007 6043 5399 6 878 1603 293 26 12 chr4 38416693 38417634 -117212486 + Lx5 LINE L1 6152 7009 -41 6 878 1401 198 77 57 chr4 38418693 38419218 -117210902 + RMER6C LTR ERVK 4 690 0 6 878 22 0 0 0 chr4 38420585 38420607 -117209513 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 324 0 0 0 chr4 38420965 38421001 -117209119 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 878 26 30 0 0 chr4 38421781 38421814 -117208306 + AT_rich Low_complexity Low_complexity 1 33 0 6 878 415 250 69 23 chr4 38422046 38422177 -117207943 - B3 SINE B2 0 216 80 6 878 5940 117 62 2 chr4 38422703 38423694 -117206426 + L1_Mus3 LINE L1 5539 6585 -53 6 878 5678 105 0 5 chr4 38423704 38424535 -117205585 + L1_Mm LINE L1 4700 5526 -357 6 878 1758 60 60 0 chr4 38424535 38424786 -117205334 + L1Md_F3 LINE L1 6318 6583 -1 6 878 332 190 0 12 chr4 38424953 38425033 -117205087 + CT-rich Low_complexity Low_complexity 2 80 0 6 878 270 0 0 0 chr4 38425907 38425937 -117204183 + (A)n Simple_repeat Simple_repeat 1 30 0 6 878 21 36 0 0 chr4 38426041 38426069 -117204051 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 234 244 60 24 chr4 38426628 38426712 -117203408 + L1M3 LINE L1 3863 3949 -2191 6 878 7308 75 0 3 chr4 38426767 38427723 -117202397 - L1Md_F2 LINE L1 -11 6571 5619 6 878 4196 64 2 0 chr4 38427731 38428265 -117201855 + L1Md_F2 LINE L1 5110 5644 -239 6 878 225 0 0 0 chr4 38428611 38428636 -117201484 + (T)n Simple_repeat Simple_repeat 1 25 0 6 878 2168 187 93 17 chr4 38428930 38429063 -117201057 - RMER6D LTR ERVK -210 510 353 6 878 333 0 0 0 chr4 38429063 38429100 -117201020 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 878 441 0 0 0 chr4 38429100 38429148 -117200972 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 878 2168 187 93 17 chr4 38429148 38429487 -117200633 - RMER6D LTR ERVK -368 352 2 6 878 728 234 0 34 chr4 38429643 38429732 -117200388 - L1_Rod LINE L1 -6320 852 769 6 878 1714 156 24 56 chr4 38429732 38430072 -117200048 + ORR1A4 LTR MaLR 1 329 0 6 878 728 234 0 34 chr4 38430072 38430186 -117199934 - L1_Rod LINE L1 -6404 768 656 6 878 22 0 0 0 chr4 38430999 38431021 -117199099 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 22 70 0 0 chr4 38431188 38431231 -117198889 + AT_rich Low_complexity Low_complexity 1 43 0 6 878 246 311 64 36 chr4 38432054 38432082 -117198038 - B4A SINE B4 -177 115 3 6 878 256 286 12 61 chr4 38432082 38432164 -117197956 - ID2 SINE ID -3 80 3 6 878 247 196 0 0 chr4 38432198 38432254 -117197866 + A-rich Low_complexity Low_complexity 1 56 0 6 878 261 0 0 0 chr4 38432259 38432288 -117197832 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 878 366 348 67 0 chr4 38433641 38433776 -117196344 - RSINE1 SINE B4 -18 147 4 6 878 200 59 0 29 chr4 38434798 38434833 -117195287 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 6 878 779 129 7 0 chr4 38434834 38434989 -117195131 - RMER17B LTR ERVK -495 463 308 6 878 21 36 0 0 chr4 38435025 38435053 -117195067 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 1130 75 7 0 chr4 38435498 38435644 -117194476 - B1_Mus2 SINE Alu 0 147 1 6 878 234 109 98 98 chr4 38436000 38436051 -117194069 + B4 SINE B4 64 114 -178 6 878 29 0 0 0 chr4 38436172 38436201 -117193919 + AT_rich Low_complexity Low_complexity 1 29 0 6 878 192 158 0 0 chr4 38436382 38436420 -117193700 + CT-rich Low_complexity Low_complexity 2 39 0 6 878 369 0 0 0 chr4 38436750 38436791 -117193329 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 6 878 1076 270 157 3 chr4 38436814 38437152 -117192968 - MTC LTR MaLR -31 390 1 6 878 251 307 90 18 chr4 38437176 38437342 -117192778 + YREP_Mm Unknown Unknown 117 294 -1518 6 878 308 341 24 8 chr4 38437228 38437352 -117192768 - ID_B1 SINE B4 -4 220 95 6 878 677 81 0 39 chr4 38437387 38437490 -117192630 + B2_Mm2 SINE B2 2 100 -95 6 878 8169 81 42 12 chr4 38437490 38438703 -117191417 + Lx3_Mus LINE L1 5761 7009 0 6 878 30 27 0 0 chr4 38438704 38438741 -117191379 + AT_rich Low_complexity Low_complexity 1 37 0 6 878 491 326 20 40 chr4 38439559 38439759 -117190361 - B3A SINE B2 0 198 2 6 878 342 0 0 0 chr4 38440157 38440195 -117189925 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 878 210 175 95 0 chr4 38441781 38441844 -117188276 + (ATTAG)n Simple_repeat Simple_repeat 5 73 0 6 878 3924 264 67 53 chr4 38441922 38443246 -117186874 + Lx7 LINE L1 6078 7424 -272 6 878 2606 104 39 19 chr4 38443246 38443659 -117186461 + BGLII LTR ERVK 1 421 0 6 878 3924 264 67 53 chr4 38443659 38443757 -117186363 + Lx7 LINE L1 7425 7520 -176 6 878 424 293 10 0 chr4 38444299 38444398 -117185722 - RSINE1 SINE B4 -2 163 64 6 878 1282 187 78 17 chr4 38444770 38445064 -117185056 + Lx4A LINE L1 6747 7058 0 6 878 4685 216 44 38 chr4 38445505 38446664 -117183456 - RMER12 LTR ERVK -151 1171 6 6 878 665 153 21 28 chr4 38447466 38447607 -117182513 - RLTR25B LTR ERVK -234 794 655 6 878 1684 224 75 6 chr4 38447612 38447972 -117182148 - Lx6 LINE L1 -311 7149 6765 6 878 400 194 28 0 chr4 38447975 38448083 -117182037 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 6 878 233 301 167 27 chr4 38448086 38448157 -117181963 - RLTR21 LTR ERVK -318 1254 1185 6 878 234 0 0 0 chr4 38448157 38448183 -117181937 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 878 233 301 167 27 chr4 38448183 38448261 -117181859 - RLTR21 LTR ERVK -388 1184 1084 6 878 299 234 14 28 chr4 38448261 38448402 -117181718 + (TA)n Simple_repeat Simple_repeat 2 140 0 6 878 195 162 0 0 chr4 38448443 38448480 -117181640 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 6 878 516 32 0 0 chr4 38448514 38448576 -117181544 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 878 303 136 0 0 chr4 38448576 38448620 -117181500 - Lx6 LINE L1 -725 6735 6692 6 878 377 241 0 0 chr4 38448618 38448701 -117181419 + Lx6 LINE L1 6575 6657 -803 6 878 1313 250 16 106 chr4 38448710 38449135 -117180985 - RMER10B LTR ERVL -11 387 1 7 878 269 273 0 0 chr4 38449135 38449201 -117180919 + Lx6 LINE L1 6653 6718 -742 6 878 449 237 18 0 chr4 38449387 38449501 -117180619 - Lx6 LINE L1 -11 7449 7334 7 878 280 308 0 0 chr4 38449584 38449662 -117180458 - Lx7 LINE L1 -416 7280 7203 7 878 21 0 0 0 chr4 38449829 38449850 -117180270 + AT_rich Low_complexity Low_complexity 1 21 0 7 878 370 242 20 59 chr4 38450155 38450256 -117179864 - B1_Mur2 SINE Alu -11 138 42 7 878 210 345 0 0 chr4 38450259 38450346 -117179774 + CT-rich Low_complexity Low_complexity 5 91 0 7 878 547 207 256 6 chr4 38451767 38451947 -117178173 + URR1A DNA MER1_type 1 225 -1 7 878 189 100 60 0 chr4 38452681 38452731 -117177389 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 878 25 65 0 0 chr4 38452732 38452778 -117177342 + AT_rich Low_complexity Low_complexity 1 46 0 7 878 233 222 27 14 chr4 38452783 38452856 -117177264 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 878 255 283 188 24 chr4 38452960 38453130 -117176990 - Lx9 LINE L1 -41 7603 7406 7 878 294 312 32 0 chr4 38453133 38453258 -117176862 + Tigger2b DNA MER2_type 73 201 -525 7 878 282 279 15 23 chr4 38454192 38454324 -117175796 - L1MC LINE L1 -3771 2375 2245 7 878 279 175 0 0 chr4 38454331 38454388 -117175732 + GA-rich Low_complexity Low_complexity 2 58 0 7 878 23 0 0 0 chr4 38454732 38454755 -117175365 + AT_rich Low_complexity Low_complexity 1 23 0 7 878 2598 88 26 36 chr4 38455318 38455733 -117174387 + IAPLTR2a LTR ERVK 1 411 0 7 878 3384 76 10 32 chr4 38455735 38456515 -117173605 + IAPEz-int LTR ERVK 3 662 -5819 7 878 929 67 0 0 chr4 38456515 38456634 -117173486 + IAPEz-int LTR ERVK 1359 1477 -5004 7 878 1877 88 12 0 chr4 38456629 38456880 -117173240 + IAPEz-int LTR ERVK 2244 2497 -5183 7 878 15201 39 3 0 chr4 38456898 38458696 -117171424 + IAPEz-int LTR ERVK 4678 6481 0 7 878 2575 90 26 36 chr4 38458696 38459111 -117171009 + IAPLTR2a LTR ERVK 1 411 0 7 878 1880 164 0 57 chr4 38459443 38459792 -117170328 + ORR1A4 LTR MaLR 1 329 0 7 878 5579 210 50 29 chr4 38459827 38460893 -117169227 + RMER12 LTR ERVK 4 1099 -223 7 878 777 22 0 0 chr4 38460893 38460984 -117169136 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 7 878 5579 210 50 29 chr4 38460984 38461209 -117168911 + RMER12 LTR ERVK 1100 1322 0 7 878 1074 253 22 11 chr4 38461595 38461863 -117168257 - Lx7 LINE L1 -1231 6465 6195 7 878 6086 243 118 90 chr4 38461901 38463346 -117166774 - Lx7 LINE L1 -1789 5907 4381 7 878 540 0 0 0 chr4 38463346 38463406 -117166714 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 7 878 6086 246 140 107 chr4 38463406 38463678 -117166442 - Lx7 LINE L1 -1500 4380 4063 7 878 460 270 185 43 chr4 38463678 38463910 -117166210 - RMER20B LTR ERVK -216 411 147 7 878 6086 246 140 107 chr4 38463910 38464093 -117166027 - Lx7 LINE L1 -1818 4062 3849 7 878 546 268 16 31 chr4 38464093 38464220 -117165900 - RMER20B LTR ERVK -502 125 1 7 878 6086 246 140 107 chr4 38464220 38466221 -117163899 - Lx7 LINE L1 -1500 3848 1502 7 878 1899 178 9 45 chr4 38466221 38466645 -117163475 + RLTR9E LTR ERVK 1 409 0 7 878 6086 248 70 34 chr4 38466645 38468066 -117162054 - Lx7 LINE L1 -4379 1501 34 7 878 21 0 0 0 chr4 38468070 38468091 -117162029 + AT_rich Low_complexity Low_complexity 1 21 0 7 878 314 107 18 0 chr4 38468500 38468556 -117161564 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 7 878 243 0 0 0 chr4 38469179 38469206 -117160914 + (A)n Simple_repeat Simple_repeat 1 27 0 7 878 269 198 96 24 chr4 38469495 38469578 -117160542 + L1M4b LINE L1 1951 2039 -5295 7 878 361 356 30 99 chr4 38469903 38470396 -117159724 + L1M4 LINE L1 4455 4913 -1233 7 878 1063 55 20 14 chr4 38471175 38471322 -117158798 + B1_Mus1 SINE Alu 1 148 0 7 878 189 0 0 0 chr4 38471324 38471345 -117158775 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 7 878 406 237 26 19 chr4 38471591 38471746 -117158374 + (TG)n Simple_repeat Simple_repeat 2 157 0 7 878 191 198 0 54 chr4 38471826 38471938 -117158182 + (TG)n Simple_repeat Simple_repeat 2 107 0 7 878 314 123 18 0 chr4 38472089 38472146 -117157974 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 878 375 254 5 68 chr4 38472300 38472490 -117157630 + (TG)n Simple_repeat Simple_repeat 2 179 0 7 878 353 347 79 82 chr4 38472507 38472522 -117157598 - B4 SINE B4 0 292 278 7 878 1012 30 15 0 chr4 38472522 38472654 -117157466 + (GA)n Simple_repeat Simple_repeat 1 134 0 7 878 353 347 79 82 chr4 38472654 38472930 -117157190 - B4 SINE B4 -15 277 2 7 878 8680 132 28 6 chr4 38472986 38474669 -117155451 - Lx3A LINE L1 -6 6975 5256 7 878 3583 91 3 82 chr4 38474664 38475273 -117154847 + L1_Mur1 LINE L1 4487 5047 -839 7 878 816 160 100 0 chr4 38475273 38475423 -117154697 + IAPEY3_LTR LTR ERVK 1 165 -167 7 878 1010 322 95 15 chr4 38475427 38476150 -117153970 - Lx7 LINE L1 -728 6968 6188 7 878 432 0 0 0 chr4 38476151 38476199 -117153921 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 7 878 542 54 14 0 chr4 38476950 38477024 -117153096 + (TC)n Simple_repeat Simple_repeat 2 76 0 7 878 1611 124 0 4 chr4 38477351 38477601 -117152519 - Lx LINE L1 -6 6648 6400 7 878 6057 164 8 33 chr4 38477601 38478820 -117151300 - L1_Mur2 LINE L1 -1123 4754 3566 7 878 636 288 68 65 chr4 38479065 38479433 -117150687 + Lx9 LINE L1 7142 7510 -134 7 878 35 24 0 0 chr4 38479499 38479541 -117150579 + AT_rich Low_complexity Low_complexity 1 42 0 7 878 22 35 0 0 chr4 38479837 38479866 -117150254 + AT_rich Low_complexity Low_complexity 1 29 0 7 878 1119 245 51 2 chr4 38480738 38481042 -117149078 - Lx3C LINE L1 -45 6931 6659 7 878 3981 131 20 5 chr4 38483044 38483652 -117146468 + Lx LINE L1 6038 6654 0 7 878 466 244 30 30 chr4 38483767 38483902 -117146218 - ID_B1 SINE B4 0 224 90 7 878 639 121 0 0 chr4 38486317 38486416 -117143704 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 7 878 215 318 181 56 chr4 38486430 38486590 -117143530 - B4A SINE B4 -112 180 1 7 878 2453 170 128 10 chr4 38487232 38487730 -117142390 - Lx LINE L1 -6 6648 6092 7 878 1981 206 9 21 chr4 38488537 38488963 -117141157 - MTC LTR MaLR 0 421 1 7 878 380 328 126 28 chr4 38489061 38489425 -117140695 - L1MEg LINE L1 -2171 3975 3576 7 878 25 31 0 0 chr4 38489488 38489520 -117140600 + AT_rich Low_complexity Low_complexity 1 32 0 7 878 27 29 0 0 chr4 38489618 38489652 -117140468 + AT_rich Low_complexity Low_complexity 1 34 0 7 878 311 299 78 81 chr4 38491647 38491956 -117138164 - L1MEg LINE L1 -4302 1940 1633 7 878 292 196 46 18 chr4 38492228 38492337 -117137783 + (TTATA)n Simple_repeat Simple_repeat 3 114 0 7 878 253 277 125 29 chr4 38492473 38492577 -117137543 - MTE2b LTR MaLR -213 166 53 7 878 361 266 12 5 chr4 38492573 38492668 -117137452 - MTE2b LTR MaLR -287 92 1 7 878 443 301 15 7 chr4 38492965 38493102 -117137018 + Lx7 LINE L1 6896 7033 -663 7 878 312 317 99 0 chr4 38493222 38493323 -117136797 + RSINE1 SINE B4 15 125 -40 7 878 22 70 0 0 chr4 38493358 38493401 -117136719 + AT_rich Low_complexity Low_complexity 1 43 0 7 878 2353 151 22 17 chr4 38493475 38493880 -117136240 - Lx3A LINE L1 -3 6978 6572 7 878 1198 205 50 4 chr4 38494158 38494418 -117135702 + RLTR1 LTR ERV1 353 624 0 7 878 597 136 128 0 chr4 38494418 38494543 -117135577 + MMERGLN-int LTR ERV1 1 141 -3158 7 878 7518 252 13 26 chr4 38494579 38496452 -117133668 + MMERGLN-int LTR ERV1 270 2117 -5439 7 878 18767 65 1 6 chr4 38496452 38500000 -117130120 + L1Md_Gf LINE L1 64 3690 -2196 7 878 16152 25 0 0 chr4 38500000 38501899 -117128221 + L1Md_T LINE L1 3688 5586 -297 1 878 8293 41 0 0 chr4 38501899 38502895 -117127225 + L1Md_T LINE L1 5587 6582 0 1 878 2592 231 165 1 chr4 38502896 38503646 -117126474 + MMERGLN-int LTR ERV1 2106 2978 -4578 2 878 15817 257 36 37 chr4 38503634 38508105 -117122015 + MMERGLN-int LTR ERV1 3091 7556 0 2 878 1394 253 172 30 chr4 38508145 38508651 -117121469 + RLTR1 LTR ERV1 47 624 0 3 878 5758 129 16 11 chr4 38508651 38510001 -117120119 - Lx3A LINE L1 -402 6579 5229 4 878 26 0 0 0 chr4 38510001 38510027 -117120093 + AT_rich Low_complexity Low_complexity 1 26 0 5 878 1054 118 0 0 chr4 38510064 38510208 -117119912 + B1_Mus1 SINE Alu 1 144 -4 6 878 270 0 0 0 chr4 38510210 38510240 -117119880 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 878 567 297 60 0 chr4 38510726 38510911 -117119209 + Lx8 LINE L1 7080 7275 -198 8 878 374 273 128 39 chr4 38511096 38511252 -117118868 - RMER21B LTR ERV1 -350 492 323 9 878 369 0 0 0 chr4 38511277 38511318 -117118802 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 878 513 104 0 0 chr4 38511318 38511395 -117118725 + (TAG)n Simple_repeat Simple_repeat 1 77 0 1 878 1902 272 30 19 chr4 38512134 38512843 -117117277 + Lx6 LINE L1 5790 6738 -722 1 878 255 61 0 0 chr4 38512843 38512876 -117117244 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 878 793 291 24 104 chr4 38512876 38513018 -117117102 + Lx6 LINE L1 6739 6863 -597 1 878 1334 265 89 68 chr4 38513055 38513513 -117116607 + Lx6 LINE L1 6987 7454 -6 1 878 1606 105 129 74 chr4 38513995 38514305 -117115815 + ORR1A4 LTR MaLR 3 329 0 1 878 354 227 13 32 chr4 38515678 38515833 -117114287 + (TA)n Simple_repeat Simple_repeat 1 152 0 1 878 294 125 0 0 chr4 38516079 38516127 -117113993 + (TATG)n Simple_repeat Simple_repeat 2 49 0 1 878 490 315 45 81 chr4 38516469 38516690 -117113430 - ORR1E LTR MaLR -6 353 141 1 878 1266 109 22 0 chr4 38517019 38517203 -117112917 + B2_Mm1t SINE B2 1 188 -5 1 878 186 150 0 0 chr4 38518073 38518113 -117112007 + (T)n Simple_repeat Simple_repeat 1 40 0 1 878 2435 59 3 0 chr4 38518163 38518483 -117111637 - L1_Mus1 LINE L1 0 6567 6247 2 878 354 301 50 104 chr4 38520018 38520259 -117109861 - MLT1B LTR MaLR -2 388 161 2 878 22 0 0 0 chr4 38521938 38521960 -117108160 + AT_rich Low_complexity Low_complexity 1 22 0 2 878 539 117 11 0 chr4 38522328 38522422 -117107698 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 878 1059 148 60 6 chr4 38522553 38522736 -117107384 - B2_Mm2 SINE B2 0 195 3 2 878 2003 131 12 59 chr4 38522782 38523123 -117106997 + ORR1A2 LTR MaLR 1 325 -2 2 878 384 343 56 51 chr4 38523438 38523653 -117106467 + B3 SINE B2 1 216 0 2 878 284 145 0 2 chr4 38524045 38524099 -117106021 - Lx LINE L1 -341 5823 5742 2 878 216 111 0 0 chr4 38524127 38524163 -117105957 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2 878 37333 47 1 3 chr4 38524172 38530405 -117099715 - L1Md_T LINE L1 0 6585 265 2 878 1208 113 0 11 chr4 38530405 38530592 -117099528 - L1_Mus1 LINE L1 -10 6557 6373 3 878 1171 176 5 5 chr4 38530592 38530794 -117099326 - Lx LINE L1 -162 5721 5519 2 878 1986 64 7 7 chr4 38530797 38531066 -117099054 + MTA_Mm LTR MaLR 1 269 -127 3 878 19707 90 5 1 chr4 38531066 38533891 -117096229 + L1Md_F2 LINE L1 1501 4335 -1548 3 878 3864 63 2 0 chr4 38533887 38534380 -117095740 + L1Md_F2 LINE L1 5092 5585 -298 3 109 7653 40 36 3 chr4 38534381 38535334 -117094786 + L1Md_F2 LINE L1 5587 6570 -12 3 879 16263 185 63 5 chr4 38535346 38539058 -117091062 - L1VL4 LINE L1 -1007 4879 969 3 879 234 0 0 0 chr4 38539058 38539084 -117091036 + (TTCTG)n Simple_repeat Simple_repeat 4 29 0 3 879 1626 234 74 40 chr4 38539084 38539272 -117090848 - L1VL4 LINE L1 -5689 968 757 3 879 716 321 46 25 chr4 38540549 38540916 -117089204 + MTE2b LTR MaLR 1 375 -4 3 879 233 341 7 52 chr4 38541028 38541164 -117088956 + MTE-int LTR MaLR 167 296 -1284 3 879 287 344 92 14 chr4 38541568 38541860 -117088260 + L1_Rod LINE L1 1210 1524 -4323 3 879 1496 214 19 3 chr4 38541993 38542303 -117087817 + Lx2A1 LINE L1 6670 6984 -24 3 879 588 269 65 48 chr4 38542318 38542591 -117087529 + L1MB3 LINE L1 5637 5913 -270 3 879 22 0 0 0 chr4 38542881 38542903 -117087217 + AT_rich Low_complexity Low_complexity 1 22 0 4 879 3884 207 100 21 chr4 38543407 38544147 -117085973 + RMER12 LTR ERVK 1 767 -555 4 879 216 0 0 0 chr4 38544147 38544171 -117085949 + (TCCA)n Simple_repeat Simple_repeat 4 27 0 4 879 3884 224 116 52 chr4 38544171 38544716 -117085404 + RMER12 LTR ERVK 768 1848 0 4 879 418 245 147 0 chr4 38545185 38545287 -117084833 + B3A SINE B2 2 118 -80 4 879 3022 197 71 15 chr4 38545287 38545936 -117084184 - RMER6C LTR ERVK 0 690 6 4 879 731 309 79 14 chr4 38546124 38546416 -117083704 - Lx9 LINE L1 -213 7431 7121 4 879 2052 224 47 18 chr4 38546442 38546951 -117083169 + Lx3C LINE L1 6364 6887 -89 4 879 666 193 61 20 chr4 38547951 38548099 -117082021 - ORR1C2 LTR MaLR -230 154 1 4 879 584 231 35 7 chr4 38548149 38548293 -117081827 - URR1A DNA MER1_type 0 226 79 4 879 405 194 143 37 chr4 38548306 38548476 -117081644 - ORR1C2-int LTR MaLR -50 1459 1309 4 879 2199 155 32 12 chr4 38548476 38548882 -117081238 - L1_Mm LINE L1 -1775 4108 3695 4 879 7340 102 7 8 chr4 38548890 38549949 -117080171 + Lx LINE L1 5587 6643 -11 5 879 256 197 13 0 chr4 38549949 38550025 -117080095 - ORR1C2-int LTR MaLR -167 1203 1127 4 879 529 336 39 14 chr4 38550060 38550322 -117079798 + Lx8 LINE L1 6326 6699 -945 5 879 2616 46 61 0 chr4 38550323 38550649 -117079471 - ORR1A1 LTR MaLR 0 346 1 5 879 6213 90 23 2 chr4 38550649 38551559 -117078561 - ORR1A1-int LTR MaLR 0 1792 864 5 879 213 94 0 0 chr4 38551559 38551591 -117078529 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 5 879 6151 66 0 0 chr4 38551591 38552366 -117077754 - L1_Mus1 LINE L1 -10 6557 5783 5 879 4134 80 29 4 chr4 38552362 38552916 -117077204 - L1Md_F2 LINE L1 -12 6570 6003 5 879 15135 65 1 1 chr4 38552916 38554913 -117075207 + L1_Mm LINE L1 2937 4934 -949 5 879 2637 111 24 0 chr4 38554915 38555293 -117074827 - L1_Mm LINE L1 -86 5797 5411 5 879 5361 95 29 3 chr4 38555293 38556122 -117073998 - ORR1A1-int LTR MaLR -919 873 41 5 879 1775 135 11 11 chr4 38556129 38556414 -117073706 + ORR1A4 LTR MaLR 43 327 -2 5 879 2051 62 0 0 chr4 38556416 38556673 -117073447 + ORR1A1 LTR MaLR 90 346 0 5 879 478 93 0 26 chr4 38556673 38556750 -117073370 + ORR1A1-int LTR MaLR 1 75 -1717 5 879 451 49 0 47 chr4 38556721 38556785 -117073335 + ORR1A1 LTR MaLR 286 346 0 5 879 373 261 0 22 chr4 38556785 38556875 -117073245 + Lx8 LINE L1 6554 6641 -832 5 879 383 152 13 0 chr4 38557036 38557115 -117073005 + CT-rich Low_complexity Low_complexity 2 81 0 6 879 462 223 171 16 chr4 38557115 38557238 -117072882 - B1_Mus1 SINE Alu -6 142 1 6 879 694 358 74 23 chr4 38557240 38557755 -117072365 + Lx8 LINE L1 6794 7334 -139 5 879 1202 254 32 100 chr4 38558094 38558435 -117071685 + RMER19B LTR ERVK 308 625 -277 6 879 556 223 30 15 chr4 38558442 38558574 -117071546 + RMER19C LTR ERVK 466 599 -12 6 879 1345 48 0 0 chr4 38558573 38558741 -117071379 + B2_Mm1a SINE B2 20 187 -6 6 879 25 0 0 0 chr4 38558841 38558866 -117071254 + AT_rich Low_complexity Low_complexity 1 25 0 6 879 245 264 70 0 chr4 38558866 38558964 -117071156 - L1M2 LINE L1 -714 5586 5483 6 879 11879 128 30 6 chr4 38559045 38561757 -117068363 + L1Md_F LINE L1 334 3112 -2771 6 879 5235 102 4 3 chr4 38561733 38562467 -117067653 - L1Md_F2 LINE L1 -211 6371 5638 6 879 262 276 95 12 chr4 38562617 38562641 -117067479 + B1F2 SINE Alu 6 148 -1 6 879 257 340 36 9 chr4 38562641 38562751 -117067369 + ID_B1 SINE B4 111 223 -1 7 879 680 215 21 7 chr4 38563054 38563199 -117066921 - B1_Mur2 SINE Alu -1 148 2 7 879 3007 72 0 17 chr4 38564063 38564473 -117065647 + L1Md_F2 LINE L1 6167 6569 -13 7 879 215 197 32 16 chr4 38564681 38564743 -117065377 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 7 879 279 0 0 0 chr4 38564763 38564794 -117065326 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 879 816 198 1 9 chr4 38565004 38565167 -117064953 - Lx5 LINE L1 -545 6505 6362 7 879 9168 176 144 75 chr4 38565283 38569467 -117060653 - L1Md_F2 LINE L1 -8 6574 2061 7 879 351 0 0 0 chr4 38569467 38569506 -117060614 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 879 9168 220 67 108 chr4 38569506 38569812 -117060308 - L1Md_F2 LINE L1 -3809 2071 1745 7 879 303 302 65 9 chr4 38570204 38570311 -117059809 + Lx9 LINE L1 7283 7395 -249 7 879 342 262 95 0 chr4 38570367 38570493 -117059627 + Lx9 LINE L1 7360 7497 -147 7 879 852 345 94 24 chr4 38571132 38571725 -117058395 + Lx8 LINE L1 6799 7433 -40 8 879 249 86 17 33 chr4 38571835 38571895 -117058225 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 879 6639 146 30 27 chr4 38575030 38575148 -117054972 - Lx2 LINE L1 0 6997 6883 8 879 216 0 0 0 chr4 38575148 38575172 -117054948 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 8 879 6639 146 30 27 chr4 38575172 38576249 -117053871 - Lx2 LINE L1 -115 6882 5799 8 879 198 0 0 0 chr4 38576891 38576913 -117053207 + (TTG)n Simple_repeat Simple_repeat 2 23 0 8 879 1106 304 105 9 chr4 38577586 38578015 -117052105 + MT2A LTR ERVL 64 533 0 8 879 24 32 0 0 chr4 38578480 38578511 -117051609 + AT_rich Low_complexity Low_complexity 1 31 0 8 879 25 31 0 0 chr4 38578777 38578809 -117051311 + AT_rich Low_complexity Low_complexity 1 32 0 8 879 663 129 0 0 chr4 38581358 38581490 -117048630 + (GA)n Simple_repeat Simple_repeat 2 133 0 8 879 1575 246 46 30 chr4 38582507 38582879 -117047241 - Lx5 LINE L1 0 7050 6673 8 879 22 35 0 0 chr4 38583826 38583855 -117046265 + AT_rich Low_complexity Low_complexity 1 29 0 9 879 4514 191 31 22 chr4 38584640 38585608 -117044512 - Lx5 LINE L1 -2016 5680 4700 8 879 2504 47 0 47 chr4 38585608 38585946 -117044174 - RLTRETN_Mm LTR ERVK 0 322 1 9 879 4514 189 31 23 chr4 38585946 38585963 -117044157 - Lx5 LINE L1 -1178 4699 4683 8 879 1393 272 45 42 chr4 38585972 38586566 -117043554 - L1_Rod LINE L1 -319 5528 4933 9 879 384 330 0 0 chr4 38586669 38586769 -117043351 - RSINE1 SINE B4 -54 111 12 9 879 23 0 0 0 chr4 38586956 38586979 -117043141 + AT_rich Low_complexity Low_complexity 1 23 0 9 879 3503 222 88 40 chr4 38587743 38589384 -117040736 + Lx5 LINE L1 5308 7048 -2 9 879 466 243 57 35 chr4 38589398 38589539 -117040581 + L1_Rod LINE L1 5537 5680 -167 9 879 242 196 18 18 chr4 38589543 38589652 -117040468 + (TA)n Simple_repeat Simple_repeat 2 110 0 9 879 480 48 0 0 chr4 38589652 38589715 -117040405 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 879 1474 332 67 35 chr4 38589803 38590814 -117039306 + Lx9 LINE L1 6461 7504 -140 9 879 27 29 0 0 chr4 38591137 38591171 -117038949 + AT_rich Low_complexity Low_complexity 1 34 0 1 879 21 89 0 0 chr4 38591255 38591311 -117038809 + AT_rich Low_complexity Low_complexity 1 56 0 1 879 512 274 69 73 chr4 38592173 38592405 -117037715 + Lx8 LINE L1 6829 7059 -414 1 879 1455 205 97 51 chr4 38592407 38592757 -117037363 - ORR1B2 LTR MaLR 0 367 2 1 879 251 319 0 0 chr4 38592758 38592827 -117037293 + Lx8 LINE L1 7057 7125 -348 1 879 2114 129 3 0 chr4 38592855 38593173 -117036947 + L1_Mm LINE L1 5365 5683 -200 1 879 6990 70 52 3 chr4 38593170 38594117 -117036003 - L1Md_F2 LINE L1 -3 6579 5587 1 879 8273 139 21 25 chr4 38594063 38594148 -117035972 + Lx2 LINE L1 5594 5680 -1317 1 879 3630 99 0 25 chr4 38594148 38594675 -117035445 - L1_Mus2 LINE L1 0 6566 6053 1 879 8273 139 21 25 chr4 38594675 38596000 -117034120 + Lx2 LINE L1 5681 6997 0 1 879 442 333 112 3 chr4 38596012 38596406 -117033714 + L1MD LINE L1 5377 5823 -536 1 879 302 338 66 22 chr4 38596537 38596673 -117033447 - B4A SINE B4 -7 285 144 1 879 1144 241 56 11 chr4 38597076 38597344 -117032776 + ORR1C1 LTR MaLR 97 376 -2 1 879 487 248 25 57 chr4 38597470 38597608 -117032512 + RMER15 LTR ERVL 7 140 -435 1 879 4629 67 0 8 chr4 38597608 38598200 -117031920 + L1_Mus1 LINE L1 5981 6567 0 1 879 833 292 349 32 chr4 38598200 38598473 -117031647 + RMER15 LTR ERVL 141 500 -75 1 879 28 48 0 0 chr4 38598631 38598673 -117031447 + AT_rich Low_complexity Low_complexity 1 42 0 1 879 336 284 0 69 chr4 38598695 38598782 -117031338 + B1F2 SINE Alu 31 111 -38 1 879 267 359 17 86 chr4 38598782 38598811 -117031309 + B4 SINE B4 116 223 -69 1 879 15187 64 1 7 chr4 38599085 38601080 -117029040 + L1Md_F2 LINE L1 3603 5585 -298 1 879 7540 61 9 3 chr4 38601081 38602058 -117028062 + L1Md_F2 LINE L1 5587 6569 -13 1 879 22 35 0 0 chr4 38603515 38603544 -117026576 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 1052 282 53 17 chr4 38603812 38604173 -117025947 - ORR1D1 LTR MaLR 0 374 1 1 879 232 221 100 29 chr4 38604576 38604716 -117025404 + L1MEc LINE L1 733 882 -5518 1 879 302 333 89 11 chr4 38604733 38604924 -117025196 + L1MEc LINE L1 944 1149 -5251 1 879 715 284 104 13 chr4 38605021 38605328 -117024792 + Tigger7 DNA MER2_type 2057 2391 -100 1 879 2828 321 66 17 chr4 38606119 38607267 -117022853 + Lx8 LINE L1 6128 7332 -141 1 879 2468 51 0 0 chr4 38607275 38607586 -117022534 - L1Md_T LINE L1 0 6582 6272 1 879 1838 32 9 0 chr4 38607587 38607804 -117022316 + L1Md_T LINE L1 6051 6269 -313 1 879 2773 134 15 23 chr4 38607838 38608311 -117021809 + Lx LINE L1 6185 6653 -1 1 879 29 28 0 0 chr4 38608480 38608516 -117021604 + AT_rich Low_complexity Low_complexity 1 36 0 1 879 21 0 0 0 chr4 38608659 38608680 -117021440 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 22 35 0 0 chr4 38608786 38608815 -117021305 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 23 54 0 0 chr4 38609116 38609153 -117020967 + AT_rich Low_complexity Low_complexity 1 37 0 1 879 652 292 98 13 chr4 38609175 38609468 -117020652 - MTC LTR MaLR -93 326 1 1 879 24 0 0 0 chr4 38609939 38609963 -117020157 + AT_rich Low_complexity Low_complexity 1 24 0 1 879 655 331 50 32 chr4 38610363 38610641 -117019479 + B4A SINE B4 7 289 -3 1 879 257 336 0 61 chr4 38613823 38613937 -117016183 - ORR1E LTR MaLR -252 107 1 1 879 305 441 62 4 chr4 38614208 38614465 -117015655 - MER76 LTR ERVL -415 276 5 1 879 313 225 14 0 chr4 38614529 38614600 -117015520 + (TATG)n Simple_repeat Simple_repeat 1 72 0 1 879 474 255 0 0 chr4 38614607 38614760 -117015360 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 879 1656 192 74 6 chr4 38614787 38615123 -117014997 - ORR1B2 LTR MaLR -8 359 1 1 879 203 162 0 0 chr4 38615141 38615178 -117014942 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 879 2716 176 102 17 chr4 38615185 38615785 -117014335 - RMER6D LTR ERVK -66 654 4 1 879 1950 143 43 20 chr4 38615788 38616187 -117013933 - L1_Mur3 LINE L1 -1160 4720 4313 1 879 1939 217 45 3 chr4 38616166 38616986 -117013134 - L1_Mur3 LINE L1 -4231 1649 794 1 879 263 87 43 0 chr4 38617252 38617298 -117012822 + (TTTTTA)n Simple_repeat Simple_repeat 4 51 0 1 879 233 250 9 88 chr4 38617450 38617492 -117012628 + Lx9 LINE L1 6852 6892 -752 1 879 1065 67 0 0 chr4 38617492 38617626 -117012494 + B1_Mm SINE Alu 1 134 -13 1 879 468 14 14 28 chr4 38617626 38617697 -117012423 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 1 879 233 250 9 88 chr4 38617697 38617767 -117012353 + Lx9 LINE L1 6893 6955 -689 1 879 207 69 0 0 chr4 38617790 38617819 -117012301 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 879 220 211 0 0 chr4 38618019 38618057 -117012063 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 1 879 328 308 40 99 chr4 38618448 38618671 -117011449 - L1MC LINE L1 -2224 5561 5352 1 879 1158 75 0 0 chr4 38618701 38618848 -117011272 - B1_Mm SINE Alu 0 147 1 1 879 6629 176 41 9 chr4 38618981 38620366 -117009754 + Lx5 LINE L1 4485 5918 -1132 1 879 4345 186 72 6 chr4 38620368 38621207 -117008913 + RMER19B LTR ERVK 3 896 -6 1 879 326 68 0 0 chr4 38621213 38621257 -117008863 + Lx5 LINE L1 5914 5957 -1093 1 879 23 33 0 0 chr4 38621596 38621626 -117008494 + AT_rich Low_complexity Low_complexity 1 30 0 1 879 228 333 73 32 chr4 38621987 38622111 -117008009 + RSINE1 SINE B4 12 140 -25 1 879 288 111 0 0 chr4 38622123 38622168 -117007952 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 879 326 330 43 29 chr4 38622357 38622566 -117007554 + B3 SINE B2 4 215 -1 1 879 24 32 0 0 chr4 38622800 38622831 -117007289 + AT_rich Low_complexity Low_complexity 1 31 0 1 879 5032 73 5 1 chr4 38623373 38624027 -117006093 - L1Md_F2 LINE L1 -58 6524 5869 1 879 1023 108 6 0 chr4 38624025 38624182 -117005938 + L1_Mm LINE L1 4993 5150 -733 1 879 1896 96 14 14 chr4 38624289 38624565 -117005555 - L1_Mus1 LINE L1 0 6567 6292 1 879 505 271 0 30 chr4 38624583 38624716 -117005404 - B3 SINE B2 -1 215 87 1 879 288 111 0 0 chr4 38624784 38624838 -117005282 + (T)n Simple_repeat Simple_repeat 1 54 0 1 879 5776 44 6 0 chr4 38625132 38625831 -117004289 - L1Md_T LINE L1 -3 6579 5877 1 879 420 55 0 0 chr4 38625874 38625929 -117004191 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 879 5565 80 14 3 chr4 38626027 38626804 -117003316 - L1Md_A LINE L1 -5517 1207 422 1 879 211 226 19 0 chr4 38627735 38627788 -117002332 + CT-rich Low_complexity Low_complexity 3 56 0 1 879 276 30 0 0 chr4 38628158 38628191 -117001929 + (T)n Simple_repeat Simple_repeat 1 33 0 1 879 709 218 0 21 chr4 38628470 38628615 -117001505 + Lx9 LINE L1 6451 6592 -1052 1 879 1225 204 12 0 chr4 38628619 38628864 -117001256 + RLTR11A LTR ERVK 281 528 0 1 879 754 283 106 11 chr4 38629127 38629409 -117000711 + Tigger1 DNA MER2_type 2034 2342 -76 1 879 279 305 37 19 chr4 38630344 38630451 -116999669 + RSINE1 SINE B4 11 119 -46 1 879 342 0 0 0 chr4 38630471 38630509 -116999611 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 879 419 112 0 12 chr4 38630510 38630591 -116999529 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 1 879 258 309 122 69 chr4 38630700 38630888 -116999232 + B4A SINE B4 49 246 -46 1 879 235 244 11 65 chr4 38630924 38631016 -116999104 + (CATA)n Simple_repeat Simple_repeat 2 88 0 1 879 31 58 0 0 chr4 38631934 38631986 -116998134 + AT_rich Low_complexity Low_complexity 1 52 0 1 879 26261 141 43 10 chr4 38631986 38638009 -116992111 - L1_Mus3 LINE L1 -1 6637 416 1 879 988 157 29 93 chr4 38638526 38638772 -116991348 - Lx5 LINE L1 0 7000 6771 1 879 212 0 36 0 chr4 38638772 38638800 -116991320 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 879 991 303 90 28 chr4 38639448 38639835 -116990285 + MTD LTR MaLR 9 419 0 1 879 4096 173 40 13 chr4 38641522 38642465 -116987655 - Lx5 LINE L1 -675 6375 5406 1 879 2319 215 19 0 chr4 38642479 38642907 -116987213 + Lx5 LINE L1 6413 6848 -202 1 879 270 0 0 0 chr4 38643310 38643340 -116986780 + (A)n Simple_repeat Simple_repeat 1 30 0 1 879 224 323 0 15 chr4 38644780 38644846 -116985274 - ID SINE ID -135 89 25 1 879 7481 80 4 1 chr4 38644963 38646489 -116983631 - L1Md_F2 LINE L1 -10 6572 5042 1 879 4481 64 3 0 chr4 38646477 38647058 -116983062 + L1Md_F2 LINE L1 4485 5067 -816 1 879 2600 113 41 0 chr4 38647582 38647970 -116982150 - Lx2A1 LINE L1 -390 6618 6215 1 879 419 101 0 0 chr4 38647970 38648039 -116982081 + Lx2A LINE L1 6940 7008 0 1 879 21 57 0 0 chr4 38648793 38648828 -116981292 + AT_rich Low_complexity Low_complexity 1 35 0 1 879 202 266 23 14 chr4 38648912 38648998 -116981122 + MIRc SINE MIR 159 250 -18 1 879 1837 292 90 54 chr4 38649579 38650697 -116979423 + L1_Mur3 LINE L1 18 846 -6882 1 879 4810 191 51 52 chr4 38650709 38650990 -116979130 + L1_Mur3 LINE L1 1188 1485 -4395 1 879 5571 62 14 3 chr4 38650990 38651713 -116978407 + L1Md_F2 LINE L1 5840 6570 -12 1 879 4810 190 48 53 chr4 38651713 38652302 -116977818 + L1_Mur3 LINE L1 1486 2061 -3819 1 879 219 36 0 0 chr4 38652302 38652330 -116977790 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 879 4810 190 48 53 chr4 38652330 38652762 -116977358 + L1_Mur3 LINE L1 2062 2486 -3394 1 879 3192 185 40 12 chr4 38652789 38653440 -116976680 + L1_Mur3 LINE L1 5093 5761 -119 1 879 4326 256 31 88 chr4 38653434 38654764 -116975356 + Lx6 LINE L1 6205 7458 -2 1 879 924 180 159 5 chr4 38654790 38654985 -116975135 - URR1A DNA MER1_type -1 225 1 1 879 318 292 0 0 chr4 38655184 38655280 -116974840 + MLT2B4 LTR ERVL 1 96 -460 1 879 553 217 169 0 chr4 38655292 38655499 -116974621 - Lx9 LINE L1 0 7644 7403 1 879 329 259 67 100 chr4 38656759 38656879 -116973241 + Charlie12 DNA MER1_type 12 127 -2746 1 879 327 96 0 0 chr4 38657986 38658038 -116972082 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 879 2338 220 17 24 chr4 38658582 38659123 -116970997 + L1_Mur3 LINE L1 5334 5870 -10 1 879 2042 211 91 4 chr4 38659123 38659618 -116970502 + Lx7 LINE L1 6590 7127 -569 1 879 1589 314 79 47 chr4 38659668 38660206 -116969914 + Lx8 LINE L1 6438 6998 -475 1 879 1161 55 0 20 chr4 38660206 38660344 -116969776 + B1_Mm SINE Alu 2 139 -8 1 879 213 39 0 0 chr4 38660344 38660370 -116969750 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 879 1589 314 79 47 chr4 38660379 38660727 -116969393 + Lx8 LINE L1 6999 7352 -121 1 879 21 0 0 0 chr4 38661290 38661311 -116968809 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 21 0 0 0 chr4 38662259 38662280 -116967840 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 208 80 39 39 chr4 38662683 38662735 -116967385 + A-rich Low_complexity Low_complexity 1 52 0 2 879 478 280 71 44 chr4 38663917 38664100 -116966020 - MTEa LTR MaLR -191 188 1 2 879 29 28 0 0 chr4 38664825 38664861 -116965259 + AT_rich Low_complexity Low_complexity 1 36 0 2 109 12173 73 11 3 chr4 38664881 38666685 -116963435 - L1VL1 LINE L1 -2975 2908 1108 2 880 415 61 0 0 chr4 38666683 38666732 -116963388 + L1Md_F2 LINE L1 5538 5586 -297 2 880 7847 58 5 1 chr4 38666732 38667724 -116962396 + L1Md_F2 LINE L1 5587 6582 0 2 880 24 0 0 0 chr4 38667762 38667786 -116962334 + AT_rich Low_complexity Low_complexity 1 24 0 2 880 351 172 68 20 chr4 38667852 38668000 -116962120 + (TA)n Simple_repeat Simple_repeat 2 156 0 2 880 624 314 33 78 chr4 38668255 38668652 -116961468 - MTE2a LTR MaLR 0 379 1 2 880 260 120 0 20 chr4 38668945 38668996 -116961124 + (CCTG)n Simple_repeat Simple_repeat 2 51 0 2 880 185 100 59 20 chr4 38669999 38670050 -116960070 + (TAATG)n Simple_repeat Simple_repeat 2 54 0 2 880 619 258 62 0 chr4 38670424 38670602 -116959518 - Lx5 LINE L1 0 7050 6862 2 880 22 0 0 0 chr4 38671108 38671130 -116958990 + AT_rich Low_complexity Low_complexity 1 22 0 2 880 192 385 55 47 chr4 38671404 38671532 -116958588 - L2a LINE L2 -212 3214 3086 2 880 3440 30 0 0 chr4 38671853 38672249 -116957871 - MTA_Mm LTR MaLR 0 396 1 2 880 21 0 0 0 chr4 38672292 38672313 -116957807 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 623 262 68 19 chr4 38672391 38672597 -116957523 + B3 SINE B2 1 216 0 2 880 22 35 0 0 chr4 38672970 38672999 -116957121 + AT_rich Low_complexity Low_complexity 1 29 0 2 880 3200 68 33 0 chr4 38673284 38673441 -116956679 - L1_Mus1 LINE L1 -540 6027 5868 2 880 504 0 0 0 chr4 38673441 38673497 -116956623 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 880 3710 80 20 0 chr4 38673497 38673996 -116956124 - L1_Mus1 LINE L1 -700 5867 5357 2 880 3727 60 47 0 chr4 38673998 38674554 -116955566 + L1_Mus1 LINE L1 6060 6567 0 2 880 1025 111 0 7 chr4 38674739 38674884 -116955236 + B1_Mm SINE Alu 2 145 -2 2 880 227 87 43 0 chr4 38674885 38674931 -116955189 + (CAAAAA)n Simple_repeat Simple_repeat 5 52 0 2 880 23 33 0 0 chr4 38674943 38674973 -116955147 + AT_rich Low_complexity Low_complexity 1 30 0 2 880 605 293 42 80 chr4 38675259 38675740 -116954380 - RLTR11B LTR ERVK -50 477 3 2 880 216 122 0 47 chr4 38676694 38676737 -116953383 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 880 413 292 50 17 chr4 38676786 38676945 -116953175 + MLT1A1 LTR MaLR 213 386 -22 2 880 597 296 58 11 chr4 38677003 38677194 -116952926 + B3 SINE B2 15 214 -2 2 880 414 0 0 0 chr4 38677804 38677850 -116952270 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 880 447 301 23 9 chr4 38678215 38678436 -116951684 - Lx9 LINE L1 -105 7539 7316 2 880 2760 131 35 7 chr4 38679289 38679750 -116950370 + Lx3B LINE L1 6494 6967 -6 2 880 468 286 28 14 chr4 38680674 38680816 -116949304 - B1_Mur1 SINE Alu 0 149 6 2 880 21 36 0 0 chr4 38681288 38681316 -116948804 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 589 302 89 65 chr4 38681385 38681971 -116948149 - L1M2 LINE L1 -265 5582 5050 2 880 2050 222 39 12 chr4 38681971 38682485 -116947635 + RLTR11A LTR ERVK 1 528 0 2 880 589 302 87 61 chr4 38682485 38682882 -116947238 - L1M2 LINE L1 -1025 5118 4590 2 880 975 116 20 0 chr4 38682891 38683037 -116947083 - B2_Mm2 SINE B2 -37 158 10 2 880 8791 102 45 5 chr4 38683037 38684541 -116945579 + Lx3_Mus LINE L1 5402 6965 -44 2 880 19642 64 2 0 chr4 38684542 38687096 -116943024 + L1Md_F2 LINE L1 3029 5586 -297 2 880 7936 52 4 0 chr4 38687096 38688085 -116942035 + L1Md_F2 LINE L1 5587 6579 -3 2 880 315 282 56 17 chr4 38688147 38688327 -116941793 - L1_Mm LINE L1 -1291 4592 4406 2 880 230 295 17 26 chr4 38688427 38688542 -116941578 - L1M4 LINE L1 -1868 4278 4165 2 880 209 197 26 26 chr4 38688604 38688672 -116941448 + (TTTG)n Simple_repeat Simple_repeat 4 71 0 2 880 1151 75 0 0 chr4 38688672 38688819 -116941301 - B1_Mus2 SINE Alu 0 147 1 2 880 209 197 26 26 chr4 38688819 38688828 -116941292 + (TTTG)n Simple_repeat Simple_repeat 3 11 0 2 880 246 183 50 0 chr4 38688833 38688893 -116941227 - Lx2B LINE L1 -5 6995 6933 2 880 251 232 14 14 chr4 38688905 38688975 -116941145 - MT2A LTR ERVL 0 584 515 2 880 351 78 0 0 chr4 38688995 38689046 -116941074 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 880 270 0 0 0 chr4 38689046 38689076 -116941044 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 880 855 240 69 163 chr4 38689106 38689544 -116940576 - MT2A LTR ERVL -63 538 1 2 880 303 292 11 53 chr4 38689551 38689645 -116940475 - L1M2 LINE L1 -2077 4066 3977 2 880 252 200 0 0 chr4 38689667 38689742 -116940378 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 880 1836 281 54 16 chr4 38690084 38690600 -116939520 - Lx6 LINE L1 -6 7454 6919 2 880 215 234 15 15 chr4 38692010 38692075 -116938045 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 880 347 257 9 9 chr4 38692465 38692579 -116937541 - L1M2 LINE L1 -815 5482 5369 2 880 409 62 31 0 chr4 38693067 38693132 -116936988 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 880 229 167 48 0 chr4 38693158 38693200 -116936920 - L1MA6 LINE L1 -104 6196 6153 2 880 29 47 0 0 chr4 38694059 38694102 -116936018 + AT_rich Low_complexity Low_complexity 1 43 0 2 880 293 260 60 0 chr4 38694104 38694204 -116935916 - Lx9 LINE L1 -4 7640 7535 2 880 471 113 0 0 chr4 38694383 38694454 -116935666 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 880 1081 111 0 16 chr4 38694455 38694638 -116935482 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 880 720 283 116 26 chr4 38695217 38695681 -116934439 + L1MA7 LINE L1 5762 6267 -24 2 880 1673 272 111 35 chr4 38696631 38697210 -116932910 - Lx9 LINE L1 -478 7166 6544 2 880 35051 46 7 4 chr4 38697258 38702489 -116927631 + L1Md_T LINE L1 246 5589 -297 2 880 8347 34 2 0 chr4 38702489 38703472 -116926648 + L1Md_T LINE L1 5590 6574 -11 2 880 372 229 83 23 chr4 38704143 38704254 -116925866 - B1_Mur4 SINE Alu -10 140 11 2 880 771 208 39 22 chr4 38704299 38704481 -116925639 + B2_Mm2 SINE B2 1 185 -10 2 880 750 84 0 0 chr4 38704532 38704639 -116925481 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 2 880 29 28 0 0 chr4 38705047 38705083 -116925037 + AT_rich Low_complexity Low_complexity 1 36 0 2 880 1162 296 136 8 chr4 38705230 38705598 -116924522 + MTD LTR MaLR 5 419 0 2 880 3174 146 101 5 chr4 38706100 38706665 -116923455 - Lx3B LINE L1 -5 6968 6350 2 880 6067 140 32 4 chr4 38706666 38708106 -116922014 + Lx3B LINE L1 4885 6352 -621 2 880 2070 207 45 16 chr4 38708493 38709003 -116921117 + RLTR11A2 LTR ERVK 1 525 -2 2 880 676 53 18 18 chr4 38709054 38709168 -116920952 - L1Md_F3 LINE L1 -1 6583 6470 2 880 225 0 0 0 chr4 38709168 38709193 -116920927 + (T)n Simple_repeat Simple_repeat 1 25 0 2 880 234 81 0 0 chr4 38709211 38709248 -116920872 + (T)n Simple_repeat Simple_repeat 1 37 0 2 880 1441 240 134 42 chr4 38709899 38710333 -116919787 + Lx6 LINE L1 6983 7456 -4 2 880 22 0 0 0 chr4 38710438 38710460 -116919660 + AT_rich Low_complexity Low_complexity 1 22 0 2 880 852 312 29 67 chr4 38710574 38710917 -116919203 - MTEa LTR MaLR -9 370 41 2 880 1170 113 0 22 chr4 38710949 38711130 -116918990 + L1_Mus1 LINE L1 6390 6566 -1 2 880 288 259 97 58 chr4 38712321 38712685 -116917435 + L1MA6 LINE L1 5657 6019 -1454 2 880 10206 96 26 23 chr4 38712947 38713881 -116916239 + L1Md_F2 LINE L1 4022 4991 -892 2 880 5449 63 6 0 chr4 38713881 38714577 -116915543 - L1Md_F2 LINE L1 -14 6568 5869 2 880 10206 96 26 23 chr4 38714577 38715202 -116914918 + L1Md_F2 LINE L1 4992 5585 -298 2 880 7200 86 1 3 chr4 38715203 38716188 -116913932 + L1Md_F2 LINE L1 5588 6570 -12 2 880 23 54 0 0 chr4 38716686 38716723 -116913397 + AT_rich Low_complexity Low_complexity 1 37 0 2 880 1904 137 58 0 chr4 38716726 38717054 -116913066 - Lx2 LINE L1 -1 6996 6650 2 880 340 326 49 0 chr4 38717599 38717743 -116912377 - MLT1A0 LTR MaLR 0 365 215 2 880 23 54 0 0 chr4 38717895 38717932 -116912188 + AT_rich Low_complexity Low_complexity 1 37 0 2 880 1061 89 14 0 chr4 38718593 38718739 -116911381 - B1_Mus1 SINE Alu 0 148 1 2 880 24 77 0 0 chr4 38719675 38719727 -116910393 + AT_rich Low_complexity Low_complexity 1 52 0 2 880 216 0 0 0 chr4 38719971 38719995 -116910125 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 880 252 239 134 0 chr4 38721479 38721546 -116908574 - B1F SINE Alu -8 141 66 2 880 209 186 0 33 chr4 38721660 38721721 -116908399 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2 880 717 343 15 21 chr4 38721984 38722323 -116907797 - Lx8 LINE L1 -282 7191 6855 2 880 235 371 51 17 chr4 38722663 38722841 -116907279 + MER20 DNA MER1_type 35 218 -1 2 880 243 0 0 0 chr4 38723775 38723802 -116906318 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2 880 569 271 38 0 chr4 38726221 38726354 -116903766 - B3A SINE B2 -57 141 4 2 880 3149 146 18 6 chr4 38726506 38727021 -116903099 + Lx3C LINE L1 6446 6966 -10 2 880 228 356 13 76 chr4 38727684 38727763 -116902357 - LTR16A1 LTR ERVL -303 153 80 2 880 197 33 33 0 chr4 38727978 38728008 -116902112 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 880 227 296 74 80 chr4 38728954 38729130 -116900990 - L1MC3 LINE L1 -560 7225 7051 2 880 1574 283 58 23 chr4 38729141 38729658 -116900462 - Lx6 LINE L1 -334 7126 6592 2 880 1375 120 9 14 chr4 38729772 38729991 -116900129 + L1_Mus3 LINE L1 6411 6628 -10 2 880 2465 180 215 2 chr4 38730043 38730611 -116899509 + RMER6C LTR ERVK 1 689 -1 2 880 1591 295 37 29 chr4 38730786 38730966 -116899154 + Lx8 LINE L1 6577 6759 -714 2 880 282 29 0 0 chr4 38730966 38731001 -116899119 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 880 1591 295 37 29 chr4 38731001 38731336 -116898784 + Lx8 LINE L1 6760 7096 -377 2 880 233 300 0 0 chr4 38731474 38731534 -116898586 + RMER15 LTR ERVL 403 462 -113 2 880 408 167 21 10 chr4 38731540 38731637 -116898483 + GA-rich Low_complexity Low_complexity 3 100 0 2 880 21 36 0 0 chr4 38732923 38732951 -116897169 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 561 237 55 30 chr4 38732995 38733195 -116896925 + Lx7 LINE L1 5830 6034 -1662 2 880 249 322 11 0 chr4 38733383 38733473 -116896647 + L1MDa LINE L1 154 244 -6389 3 880 259 313 12 0 chr4 38733954 38734037 -116896083 + L1MDa LINE L1 1140 1223 -5410 3 880 868 348 57 5 chr4 38734534 38734901 -116895219 - Lx8 LINE L1 -721 6752 6367 3 880 763 287 62 13 chr4 38734907 38735214 -116894906 + Lx7 LINE L1 5633 5954 -1742 3 880 609 14 0 0 chr4 38735408 38735478 -116894642 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 880 419 282 10 0 chr4 38735691 38735794 -116894326 - Lx9 LINE L1 -451 7193 7090 3 880 3682 216 11 27 chr4 38736033 38736893 -116893227 + Lx2B LINE L1 6132 6977 -23 3 880 370 350 14 7 chr4 38736975 38737119 -116893001 + Lx8 LINE L1 6197 6341 -1132 3 880 531 231 107 0 chr4 38737119 38737240 -116892880 - ID_B1 SINE B4 -68 156 23 3 880 2922 69 0 13 chr4 38737320 38737717 -116892403 - L1Md_F2 LINE L1 -3 6579 6188 3 880 3278 117 41 77 chr4 38738629 38739076 -116891044 + LTRIS2 LTR ERV1 1 467 -97 3 880 1108 63 14 7 chr4 38739076 38739220 -116890900 + B1_Mus2 SINE Alu 3 147 0 3 880 3278 117 41 77 chr4 38739220 38739357 -116890763 + LTRIS2 LTR ERV1 468 564 0 3 880 2878 85 19 21 chr4 38739395 38739817 -116890303 - RMER16 LTR ERVK 0 533 113 3 880 482 266 142 32 chr4 38739947 38740137 -116889983 + B3 SINE B2 1 211 -5 3 880 4778 154 134 10 chr4 38742502 38743425 -116886695 + Lx3A LINE L1 17 1054 -5930 3 880 12067 107 14 3 chr4 38743405 38745285 -116884835 + Lx3A LINE L1 1519 3418 -2468 3 880 6430 110 57 33 chr4 38745284 38745374 -116884746 + Lx3A LINE L1 4780 4861 -1025 3 880 4561 71 0 18 chr4 38745374 38745987 -116884133 + L1Md_F2 LINE L1 5980 6581 -1 3 880 8506 115 52 19 chr4 38745987 38748059 -116882061 + Lx3A LINE L1 4862 6967 -14 3 880 230 95 0 23 chr4 38748078 38748121 -116881999 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 3 880 2501 161 182 17 chr4 38748311 38748892 -116881228 - RMER6C LTR ERVK 0 690 14 3 880 2622 85 66 5 chr4 38750510 38750887 -116879233 - MTB LTR MaLR 0 400 1 3 880 26197 143 39 55 chr4 38750965 38754006 -116876114 + L1_Mus2 LINE L1 527 3328 -2555 3 880 2013 90 29 4 chr4 38754006 38754285 -116875835 + L1_Mus1 LINE L1 6275 6560 -7 3 880 297 0 0 0 chr4 38754287 38754320 -116875800 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 880 26197 113 26 54 chr4 38754320 38757063 -116873057 + L1_Mus2 LINE L1 3329 6181 -385 3 880 2331 77 10 3 chr4 38757072 38757384 -116872736 - L1_Mus1 LINE L1 -1 6566 6253 3 880 2812 96 8 0 chr4 38757384 38757770 -116872350 + L1_Mus2 LINE L1 6178 6566 0 3 880 1384 87 0 5 chr4 38758144 38758329 -116871791 + B2_Mm2 SINE B2 2 185 -10 3 880 278 243 84 0 chr4 38758771 38758878 -116871242 - Lx8 LINE L1 -359 7114 6999 3 880 29 28 0 0 chr4 38759042 38759078 -116871042 + AT_rich Low_complexity Low_complexity 1 36 0 3 880 22 35 0 0 chr4 38759662 38759691 -116870429 + AT_rich Low_complexity Low_complexity 1 29 0 3 880 480 47 71 0 chr4 38760759 38760844 -116869276 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 3 880 404 67 0 16 chr4 38760844 38760905 -116869215 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 880 3142 120 6 40 chr4 38762359 38762881 -116867239 + RLTR1C LTR ERV1 1 519 0 3 880 335 23 0 22 chr4 38764318 38764363 -116865757 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 880 21 36 0 0 chr4 38765715 38765743 -116864377 + AT_rich Low_complexity Low_complexity 1 28 0 3 880 306 165 0 0 chr4 38766808 38766887 -116863233 + GA-rich Low_complexity Low_complexity 2 80 0 3 880 1229 334 86 43 chr4 38767361 38768386 -116861734 - Lx8 LINE L1 -755 6718 5650 3 880 546 196 14 0 chr4 38769364 38769507 -116860613 + Lx9 LINE L1 7499 7643 -1 3 880 1210 111 44 0 chr4 38769718 38769898 -116860222 - B2_Mm2 SINE B2 -7 188 1 3 880 649 353 39 4 chr4 38770671 38770927 -116859193 + B4 SINE B4 27 291 -1 3 880 222 37 0 0 chr4 38770936 38770963 -116859157 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 880 22 0 0 0 chr4 38772852 38772874 -116857246 + AT_rich Low_complexity Low_complexity 1 22 0 3 880 801 131 0 40 chr4 38772892 38773043 -116857077 - L1Md_F2 LINE L1 -1 6581 6437 3 880 1002 142 0 0 chr4 38773230 38773378 -116856742 + B1_Mus1 SINE Alu 1 148 0 3 880 249 319 0 0 chr4 38773393 38773462 -116856658 + ID4_ SINE ID 2 70 -13 3 880 207 100 0 0 chr4 38773474 38773504 -116856616 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 880 234 0 0 0 chr4 38773636 38773662 -116856458 + (A)n Simple_repeat Simple_repeat 1 26 0 3 880 755 106 15 0 chr4 38774041 38774173 -116855947 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 3 880 1199 231 94 36 chr4 38774801 38775243 -116854877 - RMER19B LTR ERVK -282 620 305 3 880 21 0 0 0 chr4 38776152 38776173 -116853947 + AT_rich Low_complexity Low_complexity 1 21 0 3 880 821 67 17 0 chr4 38778084 38778204 -116851916 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 3 880 1839 224 29 9 chr4 38779043 38779485 -116850635 + Lx7 LINE L1 6815 7265 -431 3 880 627 14 0 0 chr4 38780116 38780188 -116849932 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 880 318 328 34 52 chr4 38781812 38782046 -116848074 + B4 SINE B4 4 291 -1 3 880 504 0 0 0 chr4 38782062 38782118 -116848002 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 880 1681 165 40 125 chr4 38782223 38782459 -116847661 - ORR1B2 LTR MaLR 0 367 131 3 880 1060 122 0 0 chr4 38782459 38782607 -116847513 + B1_Mus1 SINE Alu 1 148 0 3 880 1681 165 40 125 chr4 38782607 38782771 -116847349 - ORR1B2 LTR MaLR -237 130 1 3 880 536 250 0 0 chr4 38783306 38783446 -116846674 - L1M2 LINE L1 -1080 5063 4924 3 880 367 317 62 14 chr4 38783691 38783835 -116846285 + MLT1B LTR MaLR 212 362 -28 3 880 716 270 55 10 chr4 38783889 38784091 -116846029 - B3 SINE B2 -5 211 1 3 880 286 338 132 60 chr4 38784465 38784714 -116845406 + RMER2 LTR ERV1 290 556 -11 3 880 621 277 25 6 chr4 38786089 38786249 -116843871 + Lx6 LINE L1 6109 6271 -1189 3 880 730 251 92 64 chr4 38786245 38786444 -116843676 + Lx6 LINE L1 6520 6723 -737 3 880 291 54 0 0 chr4 38786444 38786481 -116843639 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 3 880 1207 302 68 19 chr4 38786481 38787047 -116843073 + Lx6 LINE L1 6461 7378 -82 3 880 251 205 165 13 chr4 38787430 38787588 -116842532 + RMER17C LTR ERVK 103 284 -126 3 880 207 114 0 0 chr4 38787682 38787717 -116842403 + (T)n Simple_repeat Simple_repeat 1 35 0 3 880 18614 111 172 11 chr4 38787785 38792487 -116837633 - L1Md_F3 LINE L1 -1 6583 1073 3 880 2237 235 55 41 chr4 38792486 38793409 -116836711 - L1Md_F3 LINE L1 -5433 1205 261 3 880 506 198 25 0 chr4 38793675 38793832 -116836288 + (TCTA)n Simple_repeat Simple_repeat 3 163 0 3 880 1509 209 112 6 chr4 38793842 38794352 -116835768 + MYSERV16_I-int LTR ERVK 1763 2326 0 3 880 2106 88 225 0 chr4 38794352 38794694 -116835426 + BGLII LTR ERVK 1 419 -2 3 880 690 58 29 0 chr4 38794694 38794798 -116835322 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 3 880 180 330 98 11 chr4 38795642 38795734 -116834386 - L3 LINE CR1 -1185 3304 3205 3 880 1544 203 23 103 chr4 38796155 38796583 -116833537 + ORR1B1 LTR MaLR 1 394 0 3 880 21 57 0 0 chr4 38796761 38796796 -116833324 + AT_rich Low_complexity Low_complexity 1 35 0 3 881 930 290 88 44 chr4 38798066 38798340 -116831780 + MTE2b LTR MaLR 1 286 -93 3 881 461 284 34 17 chr4 38799130 38799309 -116830811 + B3A SINE B2 2 183 -15 3 881 247 103 0 0 chr4 38799526 38799565 -116830555 + L1_Mur1 LINE L1 4582 4620 -1266 3 881 2101 217 51 26 chr4 38800247 38800716 -116829404 - RLTR18B LTR ERVK -31 481 1 3 881 441 306 177 17 chr4 38800974 38801273 -116828847 + L1MC LINE L1 4289 4635 -1511 3 881 249 313 95 20 chr4 38801297 38801802 -116828318 + L1M4 LINE L1 4699 5241 -905 3 881 459 318 38 0 chr4 38802251 38802383 -116827737 - Lx5 LINE L1 -733 6317 6181 3 881 235 218 196 56 chr4 38802495 38802602 -116827518 + RLTR6_Mm LTR ERV1 1 122 -532 3 881 2365 121 205 27 chr4 38802604 38803087 -116827033 + RLTR6_Mm LTR ERV1 37 605 -49 3 881 64296 15 12 1 chr4 38803087 38810775 -116819345 + RLTR6-int LTR ERV1 1 7778 0 3 881 230 228 196 56 chr4 38810775 38810882 -116819238 + RLTR6_Mm LTR ERV1 1 122 -532 3 881 2239 126 213 26 chr4 38810884 38811348 -116818772 + RLTR6_Mm LTR ERV1 37 587 -67 3 881 2296 204 22 13 chr4 38811354 38811817 -116818303 - Lx5 LINE L1 -96 6954 6488 3 881 761 197 90 0 chr4 38811814 38812002 -116818118 + Lx4B LINE L1 6311 6515 -543 3 881 3137 180 38 24 chr4 38812419 38813078 -116817042 + RMER6A LTR ERVK 85 752 -4 3 881 236 164 36 0 chr4 38813097 38813152 -116816968 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 881 493 266 67 12 chr4 38813433 38813680 -116816440 - MTD LTR MaLR 0 419 72 3 881 3956 138 123 15 chr4 38813680 38813993 -116816127 - RMER17D2 LTR ERVK 0 809 475 3 881 653 66 0 11 chr4 38813993 38814085 -116816035 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 881 3956 138 123 15 chr4 38814085 38814501 -116815619 - RMER17D2 LTR ERVK -335 474 1 3 881 421 345 24 19 chr4 38814501 38814604 -116815516 - MTD LTR MaLR -318 103 2 3 881 235 316 71 0 chr4 38814610 38814708 -116815412 - MTD-int LTR MaLR -6 1252 1148 3 881 447 314 83 91 chr4 38814706 38815050 -116815070 - MTC-int LTR MaLR -713 1250 727 3 881 1390 325 49 3 chr4 38815219 38815814 -116814306 + Lx8 LINE L1 6710 7331 -142 3 881 279 186 11 34 chr4 38816094 38816183 -116813937 + (CATA)n Simple_repeat Simple_repeat 2 88 0 3 881 2801 30 89 0 chr4 38817127 38817464 -116812656 + IAPLTR1_Mm LTR ERVK 1 367 0 3 881 52987 24 13 6 chr4 38817464 38823890 -116806230 + IAPEz-int LTR ERVK 8 6481 0 3 881 2801 30 89 0 chr4 38823890 38824227 -116805893 + IAPLTR1_Mm LTR ERVK 1 367 0 3 881 21 57 0 0 chr4 38824351 38824386 -116805734 + AT_rich Low_complexity Low_complexity 1 35 0 3 881 319 336 52 91 chr4 38824467 38824699 -116805421 - L1M5 LINE L1 -1863 4283 4061 3 881 27 81 0 0 chr4 38824957 38825019 -116805101 + AT_rich Low_complexity Low_complexity 1 62 0 3 881 743 257 14 40 chr4 38825019 38825227 -116804893 - B3A SINE B2 -9 207 3 3 881 31 26 0 0 chr4 38825280 38825318 -116804802 + AT_rich Low_complexity Low_complexity 1 38 0 3 881 661 214 0 73 chr4 38825839 38825975 -116804145 + RMER21B LTR ERV1 1 126 -716 3 881 433 299 138 78 chr4 38825975 38826207 -116803913 + RMER21B LTR ERV1 318 563 -279 3 881 3430 99 40 4 chr4 38826671 38827189 -116802931 - MT2B2 LTR ERVL -99 485 1 3 881 341 213 120 0 chr4 38827097 38827205 -116802915 - ORR1A3-int LTR MaLR -1258 705 585 3 881 255 314 0 0 chr4 38827467 38827553 -116802567 + RodERV21-int LTR ERV1 3359 3444 -1547 3 881 2271 197 34 40 chr4 38827591 38828114 -116802006 + RodERV21-int LTR ERV1 3770 4289 -702 3 881 905 169 76 10 chr4 38828117 38828314 -116801806 + RodERV21-int LTR ERV1 4467 4676 -315 3 881 3418 251 72 27 chr4 38828344 38829315 -116800805 - Lx5 LINE L1 -1 7049 6035 3 881 10692 169 14 5 chr4 38829443 38830367 -116799753 + Lx LINE L1 3796 4733 -1150 3 881 243 0 0 0 chr4 38830367 38830394 -116799726 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 881 10692 146 16 6 chr4 38830394 38832296 -116797824 + Lx LINE L1 4734 6653 -1 3 881 2507 163 42 0 chr4 38832293 38832766 -116797354 + Lx5 LINE L1 5285 5777 -100 4 881 3765 228 18 9 chr4 38832764 38833533 -116796587 + Lx5 LINE L1 6268 7043 -7 4 881 1177 209 4 4 chr4 38833589 38833829 -116796291 + Lx5 LINE L1 5782 6021 -1029 4 881 622 194 7 34 chr4 38833829 38833978 -116796142 + RodERV21-int LTR ERV1 4665 4809 -182 3 881 360 271 10 50 chr4 38833996 38834097 -116796023 + RMER4B LTR ERVK 345 441 -144 4 881 245 316 10 87 chr4 38834129 38834233 -116795887 + RMER21B LTR ERV1 87 182 -660 4 881 523 295 108 15 chr4 38834264 38834467 -116795653 + RMER21B LTR ERV1 346 567 -275 4 881 27 92 0 0 chr4 38835049 38835125 -116794995 + AT_rich Low_complexity Low_complexity 1 76 0 4 881 195 42 0 0 chr4 38835883 38835907 -116794213 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 881 180 0 0 0 chr4 38836099 38836119 -116794001 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 881 225 143 48 0 chr4 38836160 38836202 -116793918 + CT-rich Low_complexity Low_complexity 1 44 0 4 881 348 392 33 0 chr4 38838454 38838607 -116791513 + MLT1F1 LTR MaLR 189 346 -223 4 881 21 36 0 0 chr4 38838620 38838648 -116791472 + AT_rich Low_complexity Low_complexity 1 28 0 4 881 552 178 0 0 chr4 38838913 38839020 -116791100 + CT-rich Low_complexity Low_complexity 2 108 0 4 881 22 35 0 0 chr4 38840031 38840060 -116790060 + AT_rich Low_complexity Low_complexity 1 29 0 4 881 22 0 0 0 chr4 38840330 38840352 -116789768 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 22 35 0 0 chr4 38840472 38840501 -116789619 + AT_rich Low_complexity Low_complexity 1 29 0 4 881 25 0 0 0 chr4 38840761 38840786 -116789334 + AT_rich Low_complexity Low_complexity 1 25 0 4 881 414 39 0 0 chr4 38841276 38841328 -116788792 + (TTA)n Simple_repeat Simple_repeat 3 54 0 4 881 26844 138 20 6 chr4 38841328 38847469 -116782651 - L1_Mus3 LINE L1 -17 6621 395 4 881 249 226 0 0 chr4 38847554 38847607 -116782513 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 881 336 341 15 31 chr4 38848657 38848787 -116781333 + ID_B1 SINE B4 94 221 -3 4 881 1048 96 7 7 chr4 38849234 38849381 -116780739 + B1_Mus2 SINE Alu 1 147 0 4 881 741 304 33 44 chr4 38849909 38850194 -116779926 + ORR1D2 LTR MaLR 3 333 -37 4 881 21 36 0 0 chr4 38852152 38852180 -116777940 + AT_rich Low_complexity Low_complexity 1 28 0 4 881 357 190 115 69 chr4 38852235 38852365 -116777755 - Lx7 LINE L1 0 7696 7561 4 881 3236 165 50 3 chr4 38852363 38852940 -116777180 + L1Md_F2 LINE L1 258 861 -5755 4 881 2714 32 86 3 chr4 38852940 38853279 -116776841 + IAPLTR1_Mm LTR ERVK 1 367 0 4 881 56065 19 15 1 chr4 38853279 38859661 -116770459 + IAPEz-int LTR ERVK 8 6481 0 4 881 2714 32 86 3 chr4 38859661 38860000 -116770120 + IAPLTR1_Mm LTR ERVK 1 367 0 4 881 30791 90 8 2 chr4 38860000 38864673 -116765447 + L1Md_F2 LINE L1 880 5585 -298 4 881 6909 95 5 5 chr4 38864674 38865658 -116764462 + L1Md_F2 LINE L1 5587 6570 -12 4 881 499 213 26 83 chr4 38865682 38865912 -116764208 - Lx7 LINE L1 -122 7574 7358 4 881 1096 97 6 11 chr4 38865950 38866128 -116763992 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 4 881 929 153 6 0 chr4 38866128 38866304 -116763816 + GA-rich Low_complexity Low_complexity 1 177 0 4 881 459 104 0 15 chr4 38866304 38866372 -116763748 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 4 881 3504 28 9 0 chr4 38866372 38866804 -116763316 + RLTR10C LTR ERVK 1 436 0 4 881 3550 238 72 9 chr4 38866815 38867712 -116762408 - Lx7 LINE L1 -329 7367 6414 4 881 543 128 0 0 chr4 38867839 38867925 -116762195 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 881 219 69 0 0 chr4 38868944 38868973 -116761147 + (TGG)n Simple_repeat Simple_repeat 1 29 0 4 881 594 161 0 0 chr4 38868970 38869082 -116761038 + (TG)n Simple_repeat Simple_repeat 2 113 0 4 881 446 333 8 0 chr4 38869089 38869212 -116760908 - ID_B1 SINE B4 -8 216 93 4 881 1251 230 85 63 chr4 38869269 38869635 -116760485 - ORR1D1 LTR MaLR 0 374 1 4 881 333 344 72 6 chr4 38869861 38870180 -116759940 + L1MB2 LINE L1 5832 6171 0 4 881 351 0 0 0 chr4 38871398 38871437 -116758683 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 881 1306 274 103 8 chr4 38871437 38871875 -116758245 + MT2A LTR ERVL 5 489 -44 4 881 336 24 0 0 chr4 38871875 38871916 -116758204 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 881 1306 274 103 8 chr4 38871916 38871960 -116758160 + MT2A LTR ERVL 490 533 0 4 881 258 56 0 0 chr4 38872155 38872191 -116757929 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 881 444 365 100 27 chr4 38872234 38872682 -116757438 - MER97c DNA MER1_type? -562 528 48 4 881 587 203 70 63 chr4 38873123 38873281 -116756839 + RSINE1 SINE B4 5 163 -2 4 881 525 291 12 5 chr4 38874671 38874808 -116755312 - ID_B1 SINE B4 -61 231 90 4 881 339 25 0 0 chr4 38875299 38875339 -116754781 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 881 256 365 40 33 chr4 38875380 38875530 -116754590 - MIRc SINE MIR -98 170 20 4 881 2698 52 17 84 chr4 38875884 38876300 -116753820 + RLTR10 LTR ERVK 1 388 -2 4 881 520 314 16 31 chr4 38876632 38876823 -116753297 + B3A SINE B2 6 193 -5 4 881 22 0 0 0 chr4 38877708 38877730 -116752390 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 222 174 0 0 chr4 38877872 38877918 -116752202 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 881 1652 308 101 42 chr4 38878712 38879570 -116750550 + Lx7 LINE L1 6510 7410 -286 4 881 186 71 0 0 chr4 38879570 38879598 -116750522 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 881 21 36 0 0 chr4 38879674 38879702 -116750418 + AT_rich Low_complexity Low_complexity 1 28 0 4 881 531 31 0 0 chr4 38879992 38880057 -116750063 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 881 3392 112 8 4 chr4 38880521 38881041 -116749079 - MTA_Mm-int LTR MaLR -576 522 1 4 881 3220 66 0 0 chr4 38881041 38881437 -116748683 - MTA_Mm LTR MaLR 0 396 1 4 881 4235 154 12 15 chr4 38881440 38882258 -116747862 - MusHAL1 LINE L1 -1744 968 153 4 881 7304 94 13 0 chr4 38882274 38883633 -116746487 - L1_Mus1 LINE L1 0 6567 5196 4 881 3845 121 10 3 chr4 38883629 38884243 -116745877 + L1_Mus1 LINE L1 2029 2646 -3237 4 881 1043 47 0 8 chr4 38884256 38884386 -116745734 - L1_Mm LINE L1 -292 5591 5463 4 881 7877 104 12 14 chr4 38884376 38886344 -116743776 + L1_Mus1 LINE L1 4606 6567 0 4 881 1577 214 19 57 chr4 38886376 38886864 -116743256 - L1VL4 LINE L1 -5462 873 259 4 881 2282 212 38 15 chr4 38886871 38887590 -116742530 + L1_Mur3 LINE L1 765 1505 -4375 4 881 807 222 71 19 chr4 38887582 38887793 -116742327 - Lx3C LINE L1 -524 6452 6231 4 881 1978 218 14 26 chr4 38887782 38888206 -116741914 + Lx2B LINE L1 6439 6857 -143 4 881 3235 98 61 2 chr4 38888202 38888662 -116741458 - Lx3A LINE L1 -243 6738 6252 4 881 264 380 47 41 chr4 38889754 38889924 -116740196 + MER5B DNA MER1_type 1 171 -7 4 881 675 284 23 40 chr4 38890074 38890285 -116739835 - B3A SINE B2 -6 210 4 4 881 388 311 67 15 chr4 38890535 38890669 -116739451 - B3A SINE B2 -15 183 43 4 881 216 0 0 0 chr4 38890669 38890693 -116739427 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 881 292 73 18 35 chr4 38891281 38891338 -116738782 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 4 881 798 55 53 33 chr4 38891338 38891488 -116738632 - RMER17B LTR ERVK -495 463 311 4 881 244 313 38 8 chr4 38891498 38891630 -116738490 - L1MB8 LINE L1 -230 5948 5813 4 881 839 229 38 62 chr4 38891756 38892042 -116738078 + Lx2B LINE L1 6319 6861 -139 4 881 303 347 85 47 chr4 38892051 38892287 -116737833 - L1MB8 LINE L1 -485 5689 5445 4 881 21 0 0 0 chr4 38892515 38892536 -116737584 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 2406 124 3 0 chr4 38892620 38892959 -116737161 - Lx4A LINE L1 -442 6616 6277 4 881 269 209 15 0 chr4 38892958 38893025 -116737095 - L1M2 LINE L1 -535 5765 5698 4 881 505 276 96 64 chr4 38893248 38893685 -116736435 - L1MB8 LINE L1 -1107 5039 4589 4 881 370 296 181 24 chr4 38893853 38894102 -116736018 - L1MB8 LINE L1 -1755 4391 4104 4 881 423 0 0 0 chr4 38894169 38894216 -116735904 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 881 470 353 0 0 chr4 38894243 38894362 -116735758 - RSINE1 SINE B4 -33 132 14 4 881 241 244 34 23 chr4 38894524 38894612 -116735508 - MTEa LTR MaLR -2 377 289 4 881 1066 319 81 43 chr4 38895767 38896301 -116733819 - Lx8 LINE L1 -4 7469 6916 4 881 816 375 39 21 chr4 38896309 38896775 -116733345 - Lx8 LINE L1 -699 6774 6301 4 881 353 225 3 59 chr4 38896747 38896853 -116733267 + L1VL1 LINE L1 148 273 -6149 4 881 907 81 29 69 chr4 38896853 38897026 -116733094 + L1_Mus3 LINE L1 6472 6637 -1 4 881 247 348 21 11 chr4 38897055 38897148 -116732972 - Lx8 LINE L1 -1155 6318 6225 4 881 310 309 86 86 chr4 38897442 38897778 -116732342 - L1MB8 LINE L1 -2959 3187 2852 4 881 4007 131 6 11 chr4 38898101 38898749 -116731371 - Lx2 LINE L1 0 6997 6353 4 881 23151 162 38 10 chr4 38900590 38906513 -116723607 + Lx LINE L1 556 6652 -2 4 881 334 333 18 73 chr4 38906782 38906947 -116723173 + L1MB7 LINE L1 4897 5052 -1094 4 881 340 276 95 57 chr4 38906925 38907089 -116723031 + L1MB7 LINE L1 5183 5356 -790 4 881 1261 93 22 16 chr4 38907089 38907274 -116722846 + B2_Mm1t SINE B2 1 186 -7 4 881 340 276 95 57 chr4 38907274 38907320 -116722800 + L1MB7 LINE L1 5357 5401 -745 4 881 318 26 0 0 chr4 38907414 38907453 -116722667 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 881 207 186 0 0 chr4 38907453 38907496 -116722624 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 881 324 164 0 0 chr4 38907521 38907588 -116722532 + GA-rich Low_complexity Low_complexity 1 67 0 4 881 568 336 73 30 chr4 38907588 38908180 -116721940 + L1MB7 LINE L1 5556 6172 -12 4 881 240 263 0 0 chr4 38908294 38908351 -116721769 + B3A SINE B2 5 61 -137 4 881 3767 114 65 16 chr4 38908441 38909046 -116721074 - Lx LINE L1 -7 6647 6014 4 881 2292 271 63 62 chr4 38909236 38909999 -116720121 - RMER13A LTR ERVK -96 764 1 4 881 250 326 153 0 chr4 38909999 38910097 -116720023 - Lx6 LINE L1 -86 7374 7262 4 881 1028 236 0 48 chr4 38910130 38910361 -116719759 + MTC LTR MaLR 200 419 -2 4 881 385 270 17 39 chr4 38910531 38910712 -116719408 + (CATA)n Simple_repeat Simple_repeat 2 178 0 4 881 307 321 57 91 chr4 38910733 38910963 -116719157 + L1MC5 LINE L1 6637 6858 -1103 4 881 1205 49 0 0 chr4 38910993 38911137 -116718983 + L1Md_F3 LINE L1 5441 5584 -299 4 881 8074 39 9 0 chr4 38911139 38912114 -116718006 + L1Md_F3 LINE L1 5587 6570 -14 4 881 545 192 87 58 chr4 38912145 38912283 -116717837 + B1_Mur3 SINE Alu 3 144 -5 4 881 351 0 0 0 chr4 38912602 38912641 -116717479 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 881 1222 92 6 0 chr4 38912646 38912820 -116717300 - L1_Mus1 LINE L1 -6 6561 6387 4 881 443 274 92 103 chr4 38913546 38913592 -116716528 - B3A SINE B2 -5 193 162 4 881 243 0 0 0 chr4 38913592 38913619 -116716501 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 881 443 274 92 103 chr4 38913619 38913767 -116716353 - B3A SINE B2 -37 161 1 4 881 363 282 29 37 chr4 38914794 38914930 -116715190 - RLTR22_Mur LTR ERVK -124 1724 1590 5 881 1139 215 62 11 chr4 38914995 38915035 -116715085 - RLTR22_Mur LTR ERVK -1039 809 761 5 881 462 36 0 0 chr4 38915035 38915091 -116715029 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 881 1139 215 62 11 chr4 38915091 38915323 -116714797 - RLTR22_Mur LTR ERVK -1088 760 524 5 881 606 175 0 0 chr4 38915326 38915440 -116714680 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 881 227 219 69 58 chr4 38915442 38915529 -116714591 - RLTR22_Mus LTR ERVK -1299 509 422 5 881 495 200 29 94 chr4 38915561 38915699 -116714421 + RLTR23 LTR ERV1 302 430 0 5 881 189 94 0 0 chr4 38915722 38915754 -116714366 + (A)n Simple_repeat Simple_repeat 1 32 0 5 881 2370 98 112 7 chr4 38915845 38916255 -116713865 - RLTR47_MM LTR ERV1 -79 453 1 5 881 1037 141 0 6 chr4 38916268 38916447 -116713673 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 881 574 355 79 26 chr4 38916465 38916731 -116713389 + B4A SINE B4 11 290 -2 5 881 876 61 0 0 chr4 38916776 38916891 -116713229 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 881 5508 168 40 35 chr4 38916967 38918040 -116712080 - RLTR25A LTR ERVK 0 1103 26 5 881 446 0 19 0 chr4 38918470 38918524 -116711596 + (CAA)n Simple_repeat Simple_repeat 2 56 0 5 881 3414 97 57 26 chr4 38918544 38919075 -116711045 + LTRIS2 LTR ERV1 18 564 0 5 881 437 298 127 17 chr4 38919611 38919792 -116710328 - B3 SINE B2 -13 203 3 5 881 553 358 12 6 chr4 38919879 38920039 -116710081 + RSINE1 SINE B4 5 165 0 5 881 418 310 27 27 chr4 38920583 38920729 -116709391 + B1_Mur1 SINE Alu 4 149 0 5 881 22 0 0 0 chr4 38921175 38921197 -116708923 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 1095 83 0 0 chr4 38921421 38921566 -116708554 + B1_Mus2 SINE Alu 1 145 -2 5 881 213 39 0 0 chr4 38921587 38921613 -116708507 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 881 554 315 54 0 chr4 38921626 38921829 -116708291 + B3 SINE B2 3 216 0 5 881 313 335 136 30 chr4 38921910 38922079 -116708041 + B4A SINE B4 106 292 0 5 881 465 19 0 0 chr4 38922089 38922143 -116707977 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 881 251 245 0 11 chr4 38922437 38922532 -116707588 + GA-rich Low_complexity Low_complexity 3 96 0 5 881 189 0 0 0 chr4 38924208 38924229 -116705891 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 881 651 304 44 5 chr4 38924487 38924687 -116705433 - ID_B1 SINE B4 -75 217 2 5 881 4039 230 22 11 chr4 38924746 38925758 -116704362 - Lx4B LINE L1 -73 6936 5887 5 881 29 47 0 0 chr4 38927450 38927493 -116702627 + AT_rich Low_complexity Low_complexity 1 43 0 5 881 22 70 0 0 chr4 38927553 38927596 -116702524 + AT_rich Low_complexity Low_complexity 1 43 0 5 882 520 261 15 0 chr4 38928496 38928626 -116701494 + Lx7 LINE L1 7130 7261 -435 5 882 224 264 11 22 chr4 38928655 38928744 -116701376 + T-rich Low_complexity Low_complexity 3 90 0 5 882 333 0 0 0 chr4 38929315 38929352 -116700768 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 882 409 332 67 45 chr4 38929697 38930009 -116700111 + L1MEf LINE L1 1109 1427 -4773 5 882 332 313 202 31 chr4 38930009 38930305 -116699815 + MLT1F-int LTR MaLR 639 1095 -394 5 882 1486 68 16 0 chr4 38930305 38930497 -116699623 + B2_Mm2 SINE B2 1 195 0 5 882 299 349 184 68 chr4 38930497 38930673 -116699447 + MLT1F-int LTR MaLR 970 1166 -243 5 882 339 323 113 68 chr4 38930765 38931031 -116699089 + MLT1F-int LTR MaLR 1182 1459 -30 5 882 1154 62 14 0 chr4 38931205 38931350 -116698770 + B1_Mus2 SINE Alu 1 147 0 5 882 200 204 0 0 chr4 38931350 38931399 -116698721 + A-rich Low_complexity Low_complexity 1 49 0 5 882 1215 251 3 42 chr4 38931729 38932037 -116698083 - Lx6 LINE L1 -27 7433 7138 5 882 26 50 0 0 chr4 38932216 38932256 -116697864 + AT_rich Low_complexity Low_complexity 1 40 0 5 882 1446 69 1 1 chr4 38932594 38933284 -116696836 + (GAA)n Simple_repeat Simple_repeat 1 690 0 5 882 888 120 0 0 chr4 38933303 38933453 -116696667 + (GAA)n Simple_repeat Simple_repeat 2 151 0 5 882 265 294 39 19 chr4 38933650 38933754 -116696366 - RMER17C-int LTR ERVK 0 3238 3133 5 882 2085 373 23 10 chr4 38933832 38934932 -116695188 - RodERV21-int LTR ERV1 -198 4793 3680 5 882 290 218 0 0 chr4 38935310 38935365 -116694755 - MMERGLN-int LTR ERV1 -2682 4874 4820 5 882 340 239 11 54 chr4 38935597 38935690 -116694430 + MTC LTR MaLR 28 116 -305 5 882 2250 245 48 67 chr4 38935690 38936189 -116693931 + Lx6 LINE L1 6665 7160 -300 5 882 1104 76 7 0 chr4 38936189 38936334 -116693786 - B1_Mm SINE Alu 0 147 2 5 882 2250 245 48 67 chr4 38936334 38936460 -116693660 + Lx6 LINE L1 7161 7278 -182 5 882 195 42 0 0 chr4 38936463 38936487 -116693633 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 5 882 818 238 77 54 chr4 38936566 38936864 -116693256 - L1_Mur3 LINE L1 -1061 4819 4515 5 882 23 33 0 0 chr4 38936999 38937029 -116693091 + AT_rich Low_complexity Low_complexity 1 30 0 5 882 302 283 39 115 chr4 38938115 38938204 -116691916 + B3A SINE B2 11 99 -99 5 882 195 42 0 0 chr4 38938204 38938228 -116691892 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 882 226 283 39 115 chr4 38938228 38938242 -116691878 + B2_Mm2 SINE B2 96 106 -89 5 882 211 304 0 0 chr4 38938230 38938276 -116691844 - ID4_ SINE ID -36 47 2 5 882 1515 43 5 0 chr4 38938475 38938661 -116691459 + B2_Mm1a SINE B2 1 187 -6 5 882 33 0 0 0 chr4 38938908 38938941 -116691179 + AT_rich Low_complexity Low_complexity 1 33 0 5 882 26 30 0 0 chr4 38939019 38939052 -116691068 + AT_rich Low_complexity Low_complexity 1 33 0 5 882 29 90 0 0 chr4 38939205 38939283 -116690837 + AT_rich Low_complexity Low_complexity 1 78 0 5 882 453 131 0 0 chr4 38941661 38941745 -116688375 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 882 223 186 0 0 chr4 38942260 38942303 -116687817 + T-rich Low_complexity Low_complexity 1 43 0 5 882 509 108 0 0 chr4 38943135 38943209 -116686911 + Lx7 LINE L1 6364 6437 -1259 5 882 4125 231 38 47 chr4 38943436 38944456 -116685664 + Lx7 LINE L1 6439 7449 -247 5 882 6855 88 3 2 chr4 38944465 38945672 -116684448 - L1_Mus1 LINE L1 -70 6497 5289 5 882 29252 106 66 15 chr4 38945696 38951933 -116678187 - L1Md_F2 LINE L1 -10 6572 98 5 882 263 49 24 0 chr4 38952134 38952175 -116677945 + (CAA)n Simple_repeat Simple_repeat 2 43 0 5 882 487 325 42 31 chr4 38952214 38952500 -116677620 + Lx9 LINE L1 6742 7030 -614 5 882 297 363 43 38 chr4 38952544 38952779 -116677341 + Lx8 LINE L1 7003 7238 -235 5 882 810 311 10 107 chr4 38953141 38953534 -116676586 - MTEb LTR MaLR -24 355 1 5 882 987 355 68 31 chr4 38953541 38954084 -116676036 - MTEb-int LTR MaLR -7 1573 1011 5 882 1998 274 108 87 chr4 38954142 38955333 -116674787 + RMER12 LTR ERVK 1 1216 -106 5 882 869 165 89 56 chr4 38955518 38955698 -116674422 - RLTR21 LTR ERVK -12 1560 1375 5 882 5695 165 52 36 chr4 38955697 38956773 -116673347 - RLTR21 LTR ERVK -479 1093 1 5 882 645 328 88 78 chr4 38956986 38957612 -116672508 - MTEb-int LTR MaLR -948 632 1 5 882 617 330 38 85 chr4 38957612 38958010 -116672110 - MTEb LTR MaLR 0 379 1 5 882 24 32 0 0 chr4 38958318 38958349 -116671771 + AT_rich Low_complexity Low_complexity 1 31 0 5 882 3243 232 58 20 chr4 38958384 38959234 -116670886 + Lx7 LINE L1 6815 7696 0 5 882 1893 192 78 13 chr4 38959407 38959781 -116670339 - MTC LTR MaLR -5 416 19 5 882 2749 225 9 4 chr4 38959781 38960343 -116669777 + Lx5 LINE L1 6470 7034 -16 5 882 231 114 0 0 chr4 38960343 38960378 -116669742 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 5 882 1669 174 37 91 chr4 38960603 38960977 -116669143 - ORR1B1 LTR MaLR 0 394 41 5 882 1021 187 53 0 chr4 38961251 38961460 -116668660 + URR1B DNA MER1_type 6 225 0 5 882 7018 98 23 24 chr4 38961799 38962930 -116667190 + L1_Mur1 LINE L1 4179 5308 -578 5 882 21 36 0 0 chr4 38963449 38963477 -116666643 + AT_rich Low_complexity Low_complexity 1 28 0 5 882 517 286 27 15 chr4 38963538 38963726 -116666394 + MTE2b LTR MaLR 181 361 -9 5 882 384 22 0 0 chr4 38964328 38964373 -116665747 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 882 1762 199 16 19 chr4 38964683 38965061 -116665059 + Lx7 LINE L1 5226 5602 -278 5 882 1613 232 30 59 chr4 38965061 38965465 -116664655 + ORR1B1 LTR MaLR 1 392 -2 5 882 3584 253 45 26 chr4 38965472 38966442 -116663678 + Lx7 LINE L1 5597 6585 -1111 5 882 620 221 8 8 chr4 38966443 38966575 -116663545 + ORR1C1-int LTR MaLR 13 144 -1365 5 882 4459 92 12 2 chr4 38966576 38967218 -116662902 - L1_Mm LINE L1 -1131 4752 4104 5 882 4426 107 14 0 chr4 38967223 38967871 -116662249 + L1_Mm LINE L1 4729 5385 -498 5 882 4059 254 52 30 chr4 38967877 38969060 -116661060 + ORR1C1-int LTR MaLR 162 1370 0 5 882 1001 227 29 8 chr4 38969063 38969303 -116660817 + ORR1C1 LTR MaLR 134 378 0 5 882 279 129 0 46 chr4 38969304 38969369 -116660751 + Lx6 LINE L1 7394 7455 -5 5 882 238 376 129 0 chr4 38970481 38970574 -116659546 - ID_B1 SINE B4 -33 191 87 5 882 244 310 82 111 chr4 38971562 38971805 -116658315 - MTEa LTR MaLR -42 317 82 5 882 317 239 31 83 chr4 38971874 38971970 -116658150 - MTEa LTR MaLR -281 98 8 5 882 25 0 0 0 chr4 38972548 38972573 -116657547 + AT_rich Low_complexity Low_complexity 1 25 0 5 882 240 35 0 0 chr4 38972848 38972877 -116657243 + (T)n Simple_repeat Simple_repeat 1 29 0 5 882 207 0 0 0 chr4 38973332 38973355 -116656765 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 882 182 191 0 21 chr4 38974076 38974124 -116655996 + (ATG)n Simple_repeat Simple_repeat 2 48 0 5 882 226 261 32 127 chr4 38974240 38974398 -116655722 + MIR SINE MIR 121 267 -1 5 882 914 277 147 90 chr4 38976847 38977346 -116652774 + MTC-int LTR MaLR 546 1230 -28 5 882 636 329 34 19 chr4 38977392 38977682 -116652438 + MTD LTR MaLR 49 377 -44 5 882 1214 85 11 0 chr4 38977682 38977858 -116652262 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 882 273 291 100 23 chr4 38977858 38977896 -116652224 + MTD LTR MaLR 378 417 -4 5 882 456 304 101 31 chr4 38977901 38978159 -116651961 - Lx8 LINE L1 -1109 6364 6089 5 882 3654 44 5 0 chr4 38978505 38978939 -116651181 - RLTR10C LTR ERVK 0 436 1 5 882 215 308 63 36 chr4 38979833 38979944 -116650176 + RSINE1 SINE B4 6 119 -46 5 882 591 147 0 0 chr4 38981211 38981313 -116648807 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 882 24 0 0 0 chr4 38981505 38981529 -116648591 + AT_rich Low_complexity Low_complexity 1 24 0 5 882 306 333 45 30 chr4 38981773 38981974 -116648146 - FordPrefect DNA Tip100 -3 1680 1477 5 882 1600 317 72 2 chr4 38982820 38983307 -116646813 + Lx5 LINE L1 6484 7004 -46 5 882 307 322 23 0 chr4 38983640 38983727 -116646393 + B3A SINE B2 1 89 -109 5 882 520 332 9 28 chr4 38984146 38984357 -116645763 - RLTR18B LTR ERVK -42 470 264 6 882 417 350 86 41 chr4 38984493 38984785 -116645335 - RLTR18B LTR ERVK -311 305 1 6 882 1746 248 43 23 chr4 38984879 38985163 -116644957 - Lx6 LINE L1 -26 7434 7147 6 882 258 106 0 0 chr4 38985163 38985210 -116644910 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 882 1746 258 36 22 chr4 38985210 38985531 -116644589 - Lx6 LINE L1 -314 7146 6746 6 882 982 331 42 25 chr4 38985547 38986039 -116644081 + Lx5 LINE L1 5972 6703 -757 6 882 33 25 0 0 chr4 38986328 38986368 -116643752 + AT_rich Low_complexity Low_complexity 1 40 0 6 882 21 57 0 0 chr4 38986467 38986502 -116643618 + AT_rich Low_complexity Low_complexity 1 35 0 6 882 26 0 0 0 chr4 38986534 38986560 -116643560 + AT_rich Low_complexity Low_complexity 1 26 0 6 882 327 24 0 0 chr4 38987501 38987543 -116642577 + RLTR10B LTR ERVK 1 42 -250 6 882 1984 46 0 121 chr4 38987551 38987874 -116642246 + RLTR10B LTR ERVK 9 292 0 6 882 2328 86 10 0 chr4 38987874 38988188 -116641932 + MMERVK10C-int LTR ERVK 1 317 -7264 6 882 7535 90 15 0 chr4 38988464 38989488 -116640632 + MMERVK10C-int LTR ERVK 3095 4133 -3448 6 882 2914 37 90 0 chr4 38989488 38989865 -116640255 - IAPLTR2a LTR ERVK 0 411 1 6 882 6379 62 12 13 chr4 38989865 38990697 -116639423 - IAPEz-int LTR ERVK 0 6481 5651 6 882 2706 61 0 3 chr4 38990690 38991033 -116639087 - IAPEz-int LTR ERVK -4781 1700 1359 6 882 3977 105 29 40 chr4 38991033 38991769 -116638351 - IAPEz-int LTR ERVK -5819 662 9 6 882 2917 35 90 0 chr4 38991770 38992147 -116637973 - IAPLTR2a LTR ERVK 0 411 1 6 882 14069 43 2 1 chr4 38992147 38993830 -116636290 + MMERVK10C-int LTR ERVK 4127 5810 -1771 6 882 7217 57 2 58 chr4 38993822 38994807 -116635313 + MMERVK10C-int LTR ERVK 6652 7581 0 6 882 314 48 0 0 chr4 38994807 38994849 -116635271 + RLTR10B LTR ERVK 1 42 -250 6 882 1952 50 0 122 chr4 38994885 38995205 -116634915 + RLTR10B LTR ERVK 9 289 -3 6 882 198 0 0 0 chr4 38995205 38995227 -116634893 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 882 257 230 22 44 chr4 38995300 38995391 -116634729 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 6 882 234 404 29 0 chr4 38995534 38995638 -116634482 - L2a LINE L2 -284 3142 3036 6 882 204 159 0 22 chr4 38995797 38995842 -116634278 + T-rich Low_complexity Low_complexity 4 47 0 6 882 239 41 82 0 chr4 38996030 38996079 -116634041 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 882 1158 75 0 0 chr4 38996082 38996229 -116633891 - B1_Mus1 SINE Alu 0 148 2 6 882 409 134 0 0 chr4 38996473 38996540 -116633580 - L1_Mus3 LINE L1 -309 6329 6263 6 882 1712 121 39 4 chr4 38996540 38996821 -116633299 + L1_Mus3 LINE L1 6330 6620 -18 6 882 17160 77 2 26 chr4 38996821 39000000 -116630120 + L1Md_F LINE L1 307 3404 -2479 6 882 18560 25 0 1 chr4 39000000 39002184 -116627936 + L1Md_A LINE L1 3405 5586 -297 1 882 8250 41 0 0 chr4 39002184 39003179 -116626941 + L1Md_A LINE L1 5587 6581 -1 1 882 32 26 0 0 chr4 39003180 39003219 -116626901 + AT_rich Low_complexity Low_complexity 1 39 0 2 882 21 0 0 0 chr4 39003255 39003276 -116626844 + AT_rich Low_complexity Low_complexity 1 21 0 3 882 1713 290 133 30 chr4 39003312 39004087 -116626033 + Lx8 LINE L1 6257 7111 -362 4 882 387 41 0 0 chr4 39004317 39004366 -116625754 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 882 1987 232 42 58 chr4 39004838 39005406 -116624714 - RLTR31_Mm LTR ERVK -2 559 1 6 882 429 328 75 36 chr4 39006413 39006667 -116623453 + B4A SINE B4 1 264 -28 7 882 510 17 0 0 chr4 39006667 39006726 -116623394 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 882 429 328 75 36 chr4 39006726 39006752 -116623368 + B4A SINE B4 265 292 0 7 882 12826 204 98 27 chr4 39007267 39008359 -116621761 + Lx6 LINE L1 834 2053 -3824 9 882 342 0 0 0 chr4 39008359 39008397 -116621723 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 882 12826 220 75 42 chr4 39008397 39012814 -116617306 + Lx6 LINE L1 2054 6277 -1183 9 882 2714 269 150 85 chr4 39012819 39014649 -116615471 + RLTR22_Mur LTR ERVK 1 1810 -38 1 882 883 272 12 94 chr4 39014670 39014999 -116615121 + Lx6 LINE L1 6519 6820 -640 9 882 448 196 0 0 chr4 39014999 39015088 -116615032 - B3A SINE B2 -125 91 3 1 882 1429 328 104 67 chr4 39015755 39015824 -116614296 - Lx9 LINE L1 -56 7417 7352 1 882 555 16 0 0 chr4 39015824 39015888 -116614232 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 1 882 1540 328 104 67 chr4 39015888 39017032 -116613088 - Lx9 LINE L1 -210 7434 6199 1 882 189 0 0 0 chr4 39017032 39017053 -116613067 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 882 1747 289 103 38 chr4 39017053 39018137 -116611983 - Lx9 LINE L1 -1275 6198 4966 1 882 245 331 5 11 chr4 39018309 39018434 -116611686 + GA-rich Low_complexity Low_complexity 1 124 0 1 882 297 0 0 0 chr4 39020205 39020238 -116609882 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 882 1945 164 0 0 chr4 39020475 39020773 -116609347 - Lx2B LINE L1 -241 6759 6462 1 882 1060 126 0 1 chr4 39020773 39020937 -116609183 + L1_Mus4 LINE L1 5987 6148 -488 1 882 2756 137 7 19 chr4 39020906 39021422 -116608698 + L1_Mus4 LINE L1 5500 5997 -639 1 882 1615 306 128 22 chr4 39021422 39022164 -116607956 + Lx8 LINE L1 6345 7165 -308 2 882 1663 212 76 55 chr4 39022342 39023000 -116607120 + RMER19B LTR ERVK 1 891 -11 2 882 24 0 0 0 chr4 39024028 39024052 -116606068 + AT_rich Low_complexity Low_complexity 1 24 0 2 882 23 54 0 0 chr4 39024133 39024170 -116605950 + AT_rich Low_complexity Low_complexity 1 37 0 2 882 856 284 17 42 chr4 39024183 39024422 -116605698 + B4 SINE B4 8 240 -52 2 882 200 61 61 0 chr4 39025309 39025342 -116604778 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 882 28 0 0 0 chr4 39025728 39025756 -116604364 + AT_rich Low_complexity Low_complexity 1 28 0 2 882 261 83 0 0 chr4 39025984 39026020 -116604100 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 882 515 287 0 0 chr4 39026038 39026146 -116603974 - RSINE1 SINE B4 0 165 58 2 882 264 0 109 0 chr4 39026852 39026898 -116603222 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 2 882 319 102 20 20 chr4 39026903 39026953 -116603167 - B2_Mm2 SINE B2 -143 52 3 3 882 3598 30 37 0 chr4 39027353 39027786 -116602334 - L1Md_T LINE L1 -1 6581 6133 3 882 1078 24 0 0 chr4 39027786 39027909 -116602211 + L1Md_T LINE L1 6069 6191 -391 3 882 369 0 0 0 chr4 39029324 39029365 -116600755 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 3 882 832 161 15 0 chr4 39030784 39030921 -116599199 - ORR1B1 LTR MaLR -2 392 254 3 882 6363 46 6 3 chr4 39030924 39031706 -116598414 - L1Md_F2 LINE L1 -156 6426 5642 3 882 987 243 30 85 chr4 39031713 39032077 -116598043 - RLTR9A LTR ERVK -24 344 1 3 882 6112 199 40 104 chr4 39032087 39033827 -116596293 - ORR1B1-int LTR MaLR 0 1963 335 3 882 904 220 66 4 chr4 39034016 39034244 -116595876 + Lx9 LINE L1 7224 7465 -179 3 882 440 48 16 0 chr4 39034432 39034495 -116595625 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 882 346 405 65 0 chr4 39034497 39034665 -116595455 - B3A SINE B2 -19 179 1 3 882 3109 167 98 45 chr4 39035400 39036082 -116594038 + RMER6D LTR ERVK 3 720 0 3 882 4033 135 43 1 chr4 39036468 39037119 -116593001 + RLTR33 LTR ERVK 1 678 0 4 882 225 0 0 0 chr4 39037504 39037529 -116592591 + (ATG)n Simple_repeat Simple_repeat 3 27 0 4 882 1498 220 62 20 chr4 39037581 39037933 -116592187 - ORR1B2 LTR MaLR 0 367 1 4 882 4039 269 81 23 chr4 39037935 39039227 -116590893 - ORR1B2-int LTR MaLR -2 1368 2 4 882 1654 181 50 22 chr4 39039228 39039585 -116590535 - ORR1B2 LTR MaLR 0 367 1 4 882 2840 146 8 22 chr4 39040190 39040686 -116589434 - Lx LINE L1 -6 6648 6160 4 882 22893 177 18 11 chr4 39040687 39045731 -116584389 - L1VL4 LINE L1 -57 5826 757 4 882 1602 263 23 64 chr4 39046183 39046654 -116583466 - MTC-int LTR MaLR -715 543 92 4 882 420 82 0 0 chr4 39046807 39046868 -116583252 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 882 316 339 101 20 chr4 39046906 39047105 -116583015 - MIR SINE MIR -47 215 1 4 882 22 0 0 0 chr4 39047301 39047323 -116582797 + AT_rich Low_complexity Low_complexity 1 22 0 4 882 312 324 7 49 chr4 39047474 39047617 -116582503 - RMER12 LTR ERVK -486 836 700 4 882 607 215 6 6 chr4 39048351 39048529 -116581591 + CT-rich Low_complexity Low_complexity 1 178 0 5 882 5877 223 76 13 chr4 39049137 39049678 -116580442 - Lx5 LINE L1 -8 7042 6467 5 882 7080 137 36 13 chr4 39049678 39050859 -116579261 + Lx2 LINE L1 5784 6992 -5 5 882 5877 194 50 8 chr4 39050859 39051857 -116578263 - Lx5 LINE L1 -584 6466 5409 5 882 2503 57 12 0 chr4 39051860 39052193 -116577927 - ORR1A1 LTR MaLR -9 337 1 5 882 970 157 22 0 chr4 39052193 39052371 -116577749 - Lx5 LINE L1 -462 5415 5234 5 882 251 310 13 13 chr4 39052606 39052697 -116577423 + ORR1E LTR MaLR 1 91 -268 5 882 585 0 0 0 chr4 39052697 39052762 -116577358 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 882 306 307 129 17 chr4 39052778 39052894 -116577226 + ORR1E LTR MaLR 205 333 -26 5 882 1152 297 109 40 chr4 39052936 39053715 -116576405 - L1MA6 LINE L1 -169 6131 5299 5 882 3313 152 60 14 chr4 39053765 39054352 -116575768 - Lx2B LINE L1 0 7000 6387 5 882 28 29 0 0 chr4 39054352 39054387 -116575733 + AT_rich Low_complexity Low_complexity 1 35 0 5 882 316 248 42 60 chr4 39054977 39055144 -116574976 - Lx9 LINE L1 -123 7521 7358 5 882 867 291 11 5 chr4 39055157 39055437 -116574683 - Lx9 LINE L1 -355 7289 6894 5 882 1163 311 39 3 chr4 39055440 39055634 -116574486 + Lx9 LINE L1 6614 6808 -836 5 882 231 125 0 0 chr4 39055634 39055674 -116574446 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 882 1163 311 39 3 chr4 39055674 39055862 -116574258 + Lx9 LINE L1 6809 7009 -635 5 882 3569 199 77 48 chr4 39056999 39058182 -116571938 + L1_Mur3 LINE L1 1537 2753 -3127 6 882 344 381 7 35 chr4 39058191 39058335 -116571785 - RSINE1 SINE B4 -24 141 2 6 882 561 0 0 0 chr4 39058432 39058501 -116571619 + L1Md_T LINE L1 6514 6582 0 6 882 27 49 0 0 chr4 39058501 39058542 -116571578 + AT_rich Low_complexity Low_complexity 1 41 0 6 882 307 306 136 118 chr4 39058711 39058973 -116571147 + B4A SINE B4 3 277 -15 6 882 183 225 0 0 chr4 39059003 39059074 -116571046 + CT-rich Low_complexity Low_complexity 2 72 0 6 882 531 0 0 0 chr4 39059074 39059133 -116570987 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 883 5547 96 40 8 chr4 39059825 39060181 -116569939 + L1_Mus3 LINE L1 5784 6134 -504 6 883 2911 85 17 127 chr4 39060181 39060723 -116569397 + RLTR45 LTR ERVK 1 482 0 6 883 5547 96 40 8 chr4 39060723 39061195 -116568925 + L1_Mus3 LINE L1 6135 6638 0 6 883 378 229 62 10 chr4 39062323 39062420 -116567700 + ID_B1 SINE B4 121 222 -2 7 883 2048 282 37 21 chr4 39062471 39063161 -116566959 + Lx5 LINE L1 6455 7050 0 7 883 21 36 0 0 chr4 39063270 39063298 -116566822 + AT_rich Low_complexity Low_complexity 1 28 0 7 883 558 212 0 18 chr4 39063812 39063975 -116566145 + CT-rich Low_complexity Low_complexity 3 162 0 7 883 29 70 0 0 chr4 39064560 39064617 -116565503 + AT_rich Low_complexity Low_complexity 1 57 0 7 883 21 0 0 0 chr4 39064819 39064840 -116565280 + AT_rich Low_complexity Low_complexity 1 21 0 7 883 916 161 70 0 chr4 39065285 39065471 -116564649 + L1_Mur2 LINE L1 4472 4670 -1207 7 883 216 0 0 0 chr4 39065635 39065659 -116564461 + (TTATA)n Simple_repeat Simple_repeat 1 24 0 7 883 234 245 15 0 chr4 39065914 39065993 -116564127 - MIRc SINE MIR -24 244 154 7 883 6354 70 43 7 chr4 39066316 39067175 -116562945 - L1Md_F2 LINE L1 -6 6576 5687 7 883 7187 1 0 0 chr4 39067380 39068172 -116561948 - L1Md_A LINE L1 0 6582 5791 8 883 401 318 54 73 chr4 39069641 39070274 -116559846 - L1MA8 LINE L1 -36 6255 5634 8 883 1286 78 0 6 chr4 39070293 39070474 -116559646 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 883 180 0 0 0 chr4 39070474 39070493 -116559627 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 883 329 260 119 3 chr4 39070504 39070594 -116559526 - B1F SINE Alu -26 101 2 8 883 436 313 67 14 chr4 39070607 39070913 -116559207 - L1MA8 LINE L1 -570 5613 5292 8 883 314 349 85 8 chr4 39070920 39071050 -116559070 - RSINE1 SINE B4 -17 148 9 8 883 241 275 118 49 chr4 39071138 39071341 -116558779 - L1MA8 LINE L1 -894 5249 5033 8 883 3760 228 63 28 chr4 39073629 39074523 -116555597 - Lx6 LINE L1 0 7460 6536 8 883 227 379 0 20 chr4 39075023 39075171 -116554949 + (CA)n Simple_repeat Simple_repeat 2 146 0 8 883 435 273 0 59 chr4 39075126 39075313 -116554807 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 8 883 237 255 0 0 chr4 39075358 39075456 -116554664 + (CA)n Simple_repeat Simple_repeat 2 99 0 8 883 3105 120 28 24 chr4 39077073 39077568 -116552552 - Lx LINE L1 -11 6643 6147 9 883 27 0 0 0 chr4 39077663 39077690 -116552430 + AT_rich Low_complexity Low_complexity 1 27 0 9 883 2894 56 37 0 chr4 39077936 39078313 -116551807 + MTA_Mm LTR MaLR 1 391 -5 9 883 405 0 0 0 chr4 39078316 39078361 -116551759 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 883 35259 72 4 5 chr4 39078387 39084539 -116545581 - L1Md_F3 LINE L1 -1 6583 441 9 883 545 105 0 10 chr4 39084580 39084676 -116545444 + (TC)n Simple_repeat Simple_repeat 2 96 0 9 883 562 321 73 62 chr4 39084677 39085035 -116545085 - Lx9 LINE L1 -290 7354 6993 9 883 309 100 0 0 chr4 39085076 39085126 -116544994 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 883 21269 129 19 11 chr4 39085599 39085626 -116544494 - L1VL4 LINE L1 -1093 4790 4773 9 883 4451 176 11 1 chr4 39085626 39086410 -116543710 - Lx LINE L1 0 6654 5863 9 883 21269 129 19 11 chr4 39086410 39087971 -116542149 - L1VL4 LINE L1 -1111 4772 3181 9 883 243 0 0 0 chr4 39087971 39087998 -116542122 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 883 21269 129 19 11 chr4 39087998 39089090 -116541030 - L1VL4 LINE L1 -2703 3180 2076 9 883 381 22 0 0 chr4 39089090 39089136 -116540984 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 883 21269 129 19 11 chr4 39089136 39089711 -116540409 - L1VL4 LINE L1 -3808 2075 1502 9 883 2763 61 3 0 chr4 39089711 39090056 -116540064 - ORR1A1 LTR MaLR 0 346 1 1 883 21269 193 8 95 chr4 39090056 39091328 -116538792 - L1VL4 LINE L1 -4382 1501 363 9 883 5615 102 5 8 chr4 39091352 39092153 -116537967 - Lx3_Mus LINE L1 0 7009 6211 1 883 336 135 0 0 chr4 39092267 39092319 -116537801 + L1_Mur1 LINE L1 674 725 -6257 1 883 24 53 0 0 chr4 39094036 39094074 -116536046 + AT_rich Low_complexity Low_complexity 1 38 0 1 883 1152 55 0 7 chr4 39095100 39095247 -116534873 + B1_Mus1 SINE Alu 3 148 0 1 883 246 95 0 0 chr4 39095247 39095289 -116534831 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 1 883 702 206 29 0 chr4 39095828 39095964 -116534156 - B1_Mus1 SINE Alu -7 141 2 1 883 375 157 0 0 chr4 39096444 39096533 -116533587 + CT-rich Low_complexity Low_complexity 1 89 0 1 883 454 256 64 75 chr4 39098150 39098323 -116531797 + B4A SINE B4 122 292 0 1 883 688 116 28 23 chr4 39098324 39098500 -116531620 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 1 883 561 42 82 20 chr4 39098503 39098649 -116531471 + (GA)n Simple_repeat Simple_repeat 1 155 0 1 883 7224 83 0 2 chr4 39099105 39100412 -116529708 - L1_Mus1 LINE L1 0 6567 5263 1 883 421 215 151 0 chr4 39100595 39100688 -116529432 - PB1D9 SINE Alu -2 118 12 1 883 468 190 81 57 chr4 39100697 39100711 -116529409 - B1_Mur4 SINE Alu -7 143 130 1 883 798 41 0 0 chr4 39100711 39100809 -116529311 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 883 480 169 85 47 chr4 39100809 39100917 -116529203 - B1_Mus2 SINE Alu -21 129 17 1 883 351 215 40 79 chr4 39100834 39100935 -116529185 - MT2B LTR ERVL -344 257 161 1 883 605 165 65 86 chr4 39100973 39101112 -116529008 - B1_Mus1 SINE Alu -12 136 1 1 883 396 59 0 0 chr4 39101548 39101599 -116528521 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 883 369 0 0 0 chr4 39102711 39102752 -116527368 + (T)n Simple_repeat Simple_repeat 1 41 0 1 883 195 42 0 0 chr4 39103040 39103064 -116527056 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1 883 212 259 190 0 chr4 39103064 39103122 -116526998 - ID4_ SINE ID -6 77 9 1 883 226 339 0 17 chr4 39104244 39104304 -116525816 + ID4_ SINE ID 2 60 -23 1 883 2517 71 3 0 chr4 39104660 39104985 -116525135 + L1_Mus1 LINE L1 6242 6567 0 1 883 1209 191 0 39 chr4 39105555 39105789 -116524331 + URR1B DNA MER1_type 1 225 0 1 883 338 171 14 0 chr4 39106906 39106976 -116523144 + CT-rich Low_complexity Low_complexity 2 72 0 1 883 351 169 0 0 chr4 39106976 39107047 -116523073 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 883 300 208 0 0 chr4 39107163 39107216 -116522904 - HAL1-3A_ME LINE L1 -840 2018 1966 1 883 621 0 0 0 chr4 39107288 39107357 -116522763 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 883 879 10 0 0 chr4 39107492 39107592 -116522528 + (TTC)n Simple_repeat Simple_repeat 3 102 0 1 883 788 160 0 8 chr4 39107593 39107725 -116522395 - B1_Mur4 SINE Alu -17 133 3 1 883 452 308 56 26 chr4 39108367 39108684 -116521436 - L1M3 LINE L1 -2292 3854 3519 1 883 191 36 0 35 chr4 39108712 39108741 -116521379 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 883 10977 65 4 0 chr4 39109216 39111342 -116518778 - L1Md_F2 LINE L1 0 6582 4447 1 883 247 374 102 15 chr4 39111811 39112205 -116517915 + L2 LINE L2 2021 2448 -971 1 883 21 71 0 0 chr4 39112911 39112953 -116517167 + AT_rich Low_complexity Low_complexity 1 42 0 1 883 24 53 0 0 chr4 39114773 39114811 -116515309 + AT_rich Low_complexity Low_complexity 1 38 0 1 883 552 161 16 8 chr4 39114816 39114941 -116515179 + (TA)n Simple_repeat Simple_repeat 1 126 0 1 883 759 305 44 30 chr4 39115018 39115288 -116514832 - Lx8 LINE L1 -129 7344 7071 1 883 207 273 0 0 chr4 39115464 39115519 -116514601 + GA-rich Low_complexity Low_complexity 4 58 0 1 883 643 263 136 0 chr4 39115567 39115765 -116514355 + Lx8 LINE L1 6258 6482 -991 1 883 581 183 148 173 chr4 39115788 39116065 -116514055 - Lx5 LINE L1 0 7050 6781 1 883 1017 183 41 20 chr4 39116068 39116263 -116513857 + Lx5 LINE L1 6389 6587 -463 1 883 1025 295 57 86 chr4 39116340 39116886 -116513234 + Lx8 LINE L1 6918 7447 -26 1 883 24 96 0 0 chr4 39116894 39116967 -116513153 + AT_rich Low_complexity Low_complexity 1 73 0 1 883 631 272 136 65 chr4 39117001 39117355 -116512765 + MER67C LTR ERV1 314 692 -19 1 883 1120 132 73 36 chr4 39117366 39117586 -116512534 - Lx2 LINE L1 -6 6991 6785 1 883 5249 135 30 1 chr4 39117584 39118425 -116511695 - Lx2 LINE L1 -352 6645 5781 1 883 1834 106 11 4 chr4 39118417 39118682 -116511438 - L1_Mus2 LINE L1 0 6566 6300 1 883 3999 133 68 8 chr4 39118681 39119345 -116510775 - Lx2 LINE L1 -102 5781 5078 1 883 435 301 27 54 chr4 39119462 39119648 -116510472 - B3A SINE B2 -16 182 2 1 883 35 54 0 0 chr4 39120389 39120445 -116509675 + AT_rich Low_complexity Low_complexity 1 56 0 1 883 29 60 0 0 chr4 39120569 39120619 -116509501 + AT_rich Low_complexity Low_complexity 1 50 0 1 883 598 197 21 28 chr4 39120622 39120763 -116509357 - RMER1C Other Other 0 1342 1203 1 883 445 191 5 43 chr4 39120778 39120964 -116509156 + GA-rich Low_complexity Low_complexity 2 180 0 1 883 1359 67 0 0 chr4 39120964 39121143 -116508977 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 1 883 2449 268 147 6 chr4 39121144 39121846 -116508274 - RMER1C Other Other -120 1222 422 1 883 374 57 0 19 chr4 39122122 39122176 -116507944 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 883 419 219 0 0 chr4 39122177 39122250 -116507870 - RMER1C Other Other -1188 154 82 1 883 295 330 0 18 chr4 39122819 39122930 -116507190 - RMER1B Other Other -358 708 600 1 883 266 208 14 0 chr4 39122937 39123009 -116507111 - Lx7 LINE L1 -18 7678 7606 1 883 360 309 23 53 chr4 39123195 39123328 -116506792 - MLT1D LTR MaLR -140 365 237 1 883 539 234 62 43 chr4 39123555 39123716 -116506404 + RMER21B LTR ERV1 348 511 -331 1 883 947 307 87 8 chr4 39124127 39124508 -116505612 - Lx8 LINE L1 -219 7254 6844 1 883 825 250 38 5 chr4 39124938 39125147 -116504973 + B3 SINE B2 1 216 0 1 883 290 233 0 52 chr4 39126198 39126275 -116503845 + Lx7 LINE L1 6788 6860 -836 1 883 1192 229 21 69 chr4 39126312 39126688 -116503432 + Lx7 LINE L1 7002 7359 -337 1 883 231 88 0 0 chr4 39126801 39126835 -116503285 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 883 366 214 50 30 chr4 39126839 39126940 -116503180 - Lx9 LINE L1 -742 6902 6800 1 883 396 0 0 0 chr4 39126961 39127005 -116503115 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 883 447 19 0 0 chr4 39127005 39127056 -116503064 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 883 24 32 0 0 chr4 39127124 39127155 -116502965 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 423 0 0 0 chr4 39127626 39127673 -116502447 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 883 1106 74 4 18 chr4 39129653 39129827 -116500293 + L1_Mm LINE L1 5450 5607 -572 1 883 8978 4 0 0 chr4 39129827 39130823 -116499297 + L1Md_A LINE L1 5587 6582 0 1 883 1122 182 128 10 chr4 39130994 39131282 -116498838 - Lx9 LINE L1 0 7644 7323 1 883 1195 241 218 30 chr4 39131294 39131510 -116498610 + Lx9 LINE L1 5874 6180 -1464 1 883 396 0 0 0 chr4 39131510 39131554 -116498566 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 1 883 1195 241 218 30 chr4 39131554 39131901 -116498219 + Lx9 LINE L1 6181 6543 -1101 1 883 25 0 0 0 chr4 39132026 39132051 -116498069 + AT_rich Low_complexity Low_complexity 1 25 0 1 883 353 205 25 25 chr4 39132486 39132566 -116497554 - PB1D7 SINE Alu 0 120 41 1 883 209 244 0 0 chr4 39132659 39132700 -116497420 + A-rich Low_complexity Low_complexity 1 41 0 1 883 217 232 0 14 chr4 39133604 39133674 -116496446 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 1 883 219 291 0 0 chr4 39134050 39134105 -116496015 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 883 762 11 0 0 chr4 39134180 39134267 -116495853 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 1 883 297 0 0 0 chr4 39134282 39134315 -116495805 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 883 335 386 73 17 chr4 39134718 39134897 -116495223 + MLT1B LTR MaLR 199 387 -3 1 883 284 272 185 50 chr4 39134911 39135333 -116494787 + L1MC3 LINE L1 7305 7783 -2 1 883 233 322 46 0 chr4 39135619 39135706 -116494414 + L1MC4 LINE L1 7793 7883 -159 1 883 582 322 31 40 chr4 39136104 39136330 -116493790 - Lx9 LINE L1 -1048 6596 6373 1 883 2005 306 42 24 chr4 39136335 39137082 -116493038 + Lx9 LINE L1 6714 7473 -171 1 883 471 48 0 0 chr4 39137085 39137147 -116492973 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 883 31 26 0 0 chr4 39137217 39137255 -116492865 + AT_rich Low_complexity Low_complexity 1 38 0 1 883 2034 101 52 3 chr4 39137352 39137660 -116492460 - L1_Mus4 LINE L1 -5 6631 6309 1 883 6170 45 3 3 chr4 39137730 39138489 -116491631 + L1Md_F2 LINE L1 5809 6567 -15 1 883 600 84 0 0 chr4 39138789 39138872 -116491248 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 883 3687 126 30 46 chr4 39139168 39139719 -116490401 + L1VL4 LINE L1 206 765 -5537 1 883 842 62 0 0 chr4 39139719 39139832 -116490288 + L1_Mus2 LINE L1 6453 6565 -1 1 883 3687 126 30 46 chr4 39139832 39139911 -116490209 + L1VL4 LINE L1 766 826 -5476 1 883 546 91 0 0 chr4 39140969 39141046 -116489074 + (CCCTG)n Simple_repeat Simple_repeat 3 79 0 1 883 26 0 0 0 chr4 39142362 39142388 -116487732 + AT_rich Low_complexity Low_complexity 1 26 0 1 883 25 51 0 0 chr4 39142890 39142929 -116487191 + AT_rich Low_complexity Low_complexity 1 39 0 1 883 361 327 57 23 chr4 39143308 39143571 -116486549 + L1MB1 LINE L1 5628 5899 -290 1 883 577 351 111 35 chr4 39143848 39144282 -116485838 - Lx8 LINE L1 -244 7229 6763 1 883 387 0 0 0 chr4 39144862 39144905 -116485215 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 883 3346 33 5 0 chr4 39145335 39145729 -116484391 + MTA_Mm LTR MaLR 1 396 0 1 883 1313 244 91 13 chr4 39145820 39146194 -116483926 + MTC LTR MaLR 1 403 -18 1 883 255 21 41 41 chr4 39147066 39147115 -116483005 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 883 6460 143 20 25 chr4 39147254 39148115 -116482005 - Lx LINE L1 0 6654 5797 1 883 1198 55 0 0 chr4 39148115 39148260 -116481860 - B1_Mus2 SINE Alu -1 146 2 2 883 6460 163 5 24 chr4 39148260 39149071 -116481049 - Lx LINE L1 -858 5796 4991 1 883 7422 103 9 10 chr4 39149071 39150132 -116479988 + Lx LINE L1 5595 6654 0 2 883 390 324 50 34 chr4 39150138 39150317 -116479803 - Lx8 LINE L1 -713 6760 6579 2 883 1629 171 81 75 chr4 39150639 39150987 -116479133 - ORR1B1 LTR MaLR -8 386 37 2 883 22 0 0 0 chr4 39151332 39151354 -116478766 + AT_rich Low_complexity Low_complexity 1 22 0 2 883 273 372 0 7 chr4 39151407 39151553 -116478567 + (TG)n Simple_repeat Simple_repeat 2 146 0 2 883 283 341 32 123 chr4 39151653 39151840 -116478280 + ID_B1 SINE B4 9 178 -46 2 883 272 374 18 18 chr4 39151757 39151866 -116478254 + PB1D10 SINE Alu 9 117 0 2 883 1154 282 57 0 chr4 39152810 39153143 -116476977 + Lx9 LINE L1 7016 7367 -277 2 883 372 356 58 87 chr4 39153232 39153644 -116476476 + Charlie24 DNA MER1_type 616 1015 -1435 2 883 201 243 0 0 chr4 39154757 39154794 -116475326 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 883 312 342 75 9 chr4 39155480 39155707 -116474413 - L1MC LINE L1 -3666 2480 2239 2 883 797 229 12 6 chr4 39155893 39156060 -116474060 - MER82 DNA MER2_type -286 367 200 2 883 253 354 0 0 chr4 39156323 39156402 -116473718 - MER82 DNA MER2_type -539 114 36 2 883 784 287 41 72 chr4 39157614 39158138 -116471982 - RLTR12B LTR ERVK -37 490 29 2 883 339 78 0 0 chr4 39158243 39158294 -116471826 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 883 1141 58 0 0 chr4 39158294 39158433 -116471687 - B1_Mus1 SINE Alu -9 139 1 2 883 255 95 46 31 chr4 39160334 39160399 -116469721 + T-rich Low_complexity Low_complexity 4 69 0 2 883 1050 317 85 24 chr4 39160769 39161238 -116468882 - Lx6 LINE L1 -3 7457 6960 2 883 911 91 0 0 chr4 39161607 39161739 -116468381 + L1_Mus1 LINE L1 6436 6567 0 2 883 315 332 8 27 chr4 39162205 39162356 -116467764 - MER45R DNA Tip100 -1415 166 20 2 883 1779 339 84 12 chr4 39162387 39163403 -116466717 + Lx8 LINE L1 6376 7464 -9 2 883 188 329 139 28 chr4 39163770 39163914 -116466206 - L2 LINE L2 -513 2906 2747 2 883 22 0 0 0 chr4 39165073 39165095 -116465025 + AT_rich Low_complexity Low_complexity 1 22 0 2 883 3066 107 49 43 chr4 39165623 39166132 -116463988 + RLTR1B LTR ERV1 1 512 0 2 883 5798 6 0 0 chr4 39167026 39167670 -116462450 - L1Md_T LINE L1 0 6582 5939 2 883 5388 54 3 0 chr4 39167823 39168494 -116461626 + L1Md_F2 LINE L1 5897 6569 -13 2 883 846 154 0 0 chr4 39169286 39169435 -116460685 + (TTG)n Simple_repeat Simple_repeat 2 150 0 2 883 777 269 52 5 chr4 39169820 39170014 -116460106 + B3 SINE B2 11 213 -3 2 883 240 158 0 0 chr4 39170047 39170104 -116460016 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2 883 573 15 0 0 chr4 39170114 39170180 -116459940 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 883 907 306 130 2 chr4 39170189 39170663 -116459457 + Lx9 LINE L1 6352 6826 -818 2 883 273 179 10 40 chr4 39170693 39170792 -116459328 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 883 243 0 0 0 chr4 39170824 39170851 -116459269 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 883 636 365 66 6 chr4 39170895 39171242 -116458878 + Lx9 LINE L1 6828 7195 -278 2 883 780 320 112 32 chr4 39171519 39171859 -116458261 + RMER5 LTR ERV1 33 406 -128 2 883 3243 94 104 21 chr4 39171859 39172380 -116457740 - LTRIS2 LTR ERV1 0 564 1 2 883 780 320 112 32 chr4 39172380 39172504 -116457616 + RMER5 LTR ERV1 407 534 0 2 883 207 0 0 0 chr4 39174081 39174104 -116456016 + (T)n Simple_repeat Simple_repeat 1 23 0 2 883 5359 91 12 17 chr4 39175152 39176270 -116453850 + L1Md_Gf LINE L1 362 1575 -4311 2 883 11572 43 57 17 chr4 39176270 39178380 -116451740 + L1Md_F2 LINE L1 422 2633 -3250 2 883 5988 44 16 13 chr4 39178380 39179093 -116451027 + L1Md_F2 LINE L1 4876 5587 -296 2 883 8053 46 2 2 chr4 39179093 39180088 -116450032 + L1Md_T LINE L1 5588 6582 0 2 883 29766 75 1 4 chr4 39180088 39184132 -116445988 + L1Md_F2 LINE L1 1557 5653 -230 2 883 7879 56 2 2 chr4 39184132 39185128 -116444992 + L1Md_F2 LINE L1 5587 6582 0 2 883 340 248 96 76 chr4 39185766 39185923 -116444197 - MER90 LTR ERV1 -415 160 1 2 883 3399 38 0 0 chr4 39185965 39186360 -116443760 - MTA_Mm LTR MaLR -1 395 1 2 883 8996 39 4 0 chr4 39186360 39187454 -116442666 - MTA_Mm-int LTR MaLR 0 1098 1 2 883 3344 48 0 0 chr4 39187454 39187850 -116442270 - MTA_Mm LTR MaLR 0 396 1 2 883 548 333 42 46 chr4 39188281 39188564 -116441556 - RMER15 LTR ERVL 0 575 294 2 883 372 262 100 60 chr4 39188556 39188706 -116441414 - RMER15 LTR ERVL -416 159 4 2 883 254 329 25 25 chr4 39189344 39189425 -116440695 + ID2 SINE ID 2 82 -1 2 883 201 296 14 0 chr4 39189588 39189659 -116440461 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 883 1757 249 3 8 chr4 39189878 39190239 -116439881 + Lx6 LINE L1 6892 7250 -210 2 884 201 196 0 0 chr4 39190832 39190878 -116439242 + A-rich Low_complexity Low_complexity 1 46 0 2 884 25 65 0 0 chr4 39191011 39191057 -116439063 + AT_rich Low_complexity Low_complexity 1 46 0 2 884 1227 91 131 5 chr4 39191077 39191276 -116438844 - L1Md_F2 LINE L1 -4 6578 6355 2 884 1520 141 26 11 chr4 39191282 39191554 -116438566 - RLTR9A LTR ERVK 0 368 93 2 884 219 36 0 0 chr4 39191585 39191613 -116438507 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 2 884 369 340 39 0 chr4 39191648 39191804 -116438316 + Lx7 LINE L1 7177 7338 -358 2 884 36 62 0 0 chr4 39191933 39191997 -116438123 + AT_rich Low_complexity Low_complexity 1 64 0 2 884 4205 104 21 5 chr4 39192133 39192738 -116437382 + Lx LINE L1 6005 6621 -33 2 884 189 0 0 0 chr4 39192738 39192759 -116437361 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 884 4205 104 21 5 chr4 39192759 39192774 -116437346 + Lx LINE L1 6622 6635 -19 2 884 21 36 0 0 chr4 39193004 39193032 -116437088 + AT_rich Low_complexity Low_complexity 1 28 0 2 884 324 372 83 51 chr4 39193032 39193188 -116436932 - RSINE1 SINE B4 -3 162 2 2 884 22 0 0 0 chr4 39193497 39193519 -116436601 + AT_rich Low_complexity Low_complexity 1 22 0 2 884 21 89 0 0 chr4 39193596 39193652 -116436468 + AT_rich Low_complexity Low_complexity 1 56 0 2 884 353 326 95 7 chr4 39194674 39194822 -116435298 - Lx8 LINE L1 -1117 6356 6196 2 884 21 0 0 0 chr4 39196082 39196103 -116434017 + AT_rich Low_complexity Low_complexity 1 21 0 2 884 236 296 157 78 chr4 39196432 39196623 -116433497 - Lx8 LINE L1 -219 7254 7049 2 884 513 296 61 14 chr4 39196751 39196898 -116433222 + RSINE1 SINE B4 12 165 0 2 884 23 54 0 0 chr4 39197164 39197201 -116432919 + AT_rich Low_complexity Low_complexity 1 37 0 2 884 3530 170 60 82 chr4 39197494 39198086 -116432034 + RLTR22_Mur LTR ERVK 77 648 -1200 2 884 180 0 0 0 chr4 39198086 39198106 -116432014 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2 884 1483 113 0 9 chr4 39198106 39198330 -116431790 - L1Md_F2 LINE L1 -12 6570 6349 2 884 3530 170 60 82 chr4 39198330 39198633 -116431487 + RLTR22_Mur LTR ERVK 649 952 -896 2 884 11040 106 4 4 chr4 39198802 39200422 -116429698 - L1_Mm LINE L1 -356 5527 3907 2 884 4551 77 0 22 chr4 39200423 39201045 -116429075 + L1_Mus1 LINE L1 5960 6567 0 2 884 1266 183 21 4 chr4 39201074 39201315 -116428805 + RLTR22_Mur LTR ERVK 1593 1837 -11 2 884 30 100 0 0 chr4 39201885 39201985 -116428135 + AT_rich Low_complexity Low_complexity 1 100 0 2 884 437 342 0 0 chr4 39202515 39202626 -116427494 - PB1D7 SINE Alu -9 111 1 2 884 2538 82 17 3 chr4 39202933 39203286 -116426834 - L1_Mus3 LINE L1 -7 6631 6274 2 884 31 44 0 0 chr4 39203346 39203391 -116426729 + AT_rich Low_complexity Low_complexity 1 45 0 2 884 1757 210 26 18 chr4 39204567 39204950 -116425170 - Lx4B LINE L1 -4 7054 6669 2 884 6366 56 44 4 chr4 39204951 39205773 -116424347 + RLTR13A LTR ERVK 1 855 0 2 884 4005 176 23 36 chr4 39205773 39206663 -116423457 - Lx4B LINE L1 -658 6400 5516 2 884 1340 73 0 0 chr4 39206663 39206827 -116423293 - U1 snRNA snRNA -1 164 1 2 884 2165 162 9 63 chr4 39206827 39206869 -116423251 - Lx4B LINE L1 -362 5515 5474 2 884 2346 162 62 19 chr4 39206869 39207353 -116422767 + Lx4B LINE L1 4958 5462 -415 2 884 3087 22 0 8 chr4 39207440 39207806 -116422314 - L1Md_F2 LINE L1 -14 6568 6206 2 884 1670 95 9 5 chr4 39207806 39208042 -116422078 + L1Md_F2 LINE L1 6034 6237 -345 2 884 295 276 167 38 chr4 39208181 39208313 -116421807 + MTEa LTR MaLR 230 378 -1 2 884 33 0 0 0 chr4 39209027 39209060 -116421060 + AT_rich Low_complexity Low_complexity 1 33 0 2 884 2245 279 73 80 chr4 39209475 39210339 -116419781 - RMER13A LTR ERVK 0 860 3 2 884 22 35 0 0 chr4 39210452 39210481 -116419639 + AT_rich Low_complexity Low_complexity 1 29 0 2 884 284 261 0 0 chr4 39210511 39210580 -116419540 + L1MA4A LINE L1 5818 5886 -417 2 884 35203 46 0 3 chr4 39213392 39218681 -116411439 + L1Md_T LINE L1 222 5589 -297 2 884 8487 31 0 0 chr4 39218681 39219677 -116410443 + L1Md_T LINE L1 5590 6585 0 2 884 248 292 47 40 chr4 39220242 39220392 -116409728 - Lx8 LINE L1 -355 7118 6968 2 884 21 36 0 0 chr4 39220845 39220873 -116409247 + AT_rich Low_complexity Low_complexity 1 28 0 2 884 1446 199 93 34 chr4 39220874 39221032 -116409088 + ORR1D1 LTR MaLR 1 183 -191 2 884 1239 77 0 0 chr4 39221032 39221200 -116408920 + (TC)n Simple_repeat Simple_repeat 1 168 0 2 884 1446 199 93 34 chr4 39221200 39221394 -116408726 + ORR1D1 LTR MaLR 184 374 0 2 884 638 345 58 14 chr4 39221396 39221690 -116408430 - MLT1A0 LTR MaLR -56 309 3 2 884 189 107 0 0 chr4 39222420 39222448 -116407672 + (T)n Simple_repeat Simple_repeat 1 28 0 2 884 7695 140 19 4 chr4 39222883 39223928 -116406192 - Lx2 LINE L1 -176 6821 5764 2 884 222 62 0 0 chr4 39223928 39223960 -116406160 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 884 243 79 0 0 chr4 39223965 39224003 -116406117 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 884 1038 93 0 0 chr4 39224003 39224142 -116405978 - B1_Mus2 SINE Alu -8 139 1 2 884 7695 139 24 5 chr4 39224142 39224606 -116405514 - Lx2 LINE L1 -132 5754 5285 2 884 9326 58 10 1 chr4 39224592 39226500 -116403620 - L1Md_F2 LINE L1 -12 6570 4643 2 884 201 154 0 0 chr4 39226543 39226582 -116403538 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 884 3475 65 37 2 chr4 39226582 39227071 -116403049 - Lx2 LINE L1 -611 5275 4770 2 884 4352 184 7 0 chr4 39227072 39227911 -116402209 - L1_Mur2 LINE L1 -547 5330 4486 2 884 361 114 0 0 chr4 39227980 39228036 -116402084 - L1_Mm LINE L1 -758 5128 5070 2 884 676 45 45 9 chr4 39228036 39228147 -116401973 - L1Md_F3 LINE L1 -1 6583 6469 2 884 210 37 0 0 chr4 39229245 39229272 -116400848 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 884 2078 206 27 0 chr4 39229540 39229948 -116400172 + MTC LTR MaLR 3 421 0 2 884 7552 43 3 3 chr4 39229969 39230899 -116399221 + L1Md_F2 LINE L1 5640 6569 -13 2 884 297 0 0 0 chr4 39231115 39231148 -116398972 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 884 649 286 101 0 chr4 39232454 39232643 -116397477 - B3 SINE B2 -8 208 1 3 884 526 267 17 0 chr4 39232862 39232978 -116397142 + RLTR18B LTR ERVK 1 118 -394 3 884 2345 192 33 10 chr4 39234827 39235316 -116394804 - L1_Mur3 LINE L1 -6595 1117 618 3 884 12033 171 41 21 chr4 39235420 39237222 -116392898 + Lx6 LINE L1 3385 5217 -663 3 884 3489 178 43 20 chr4 39237222 39237958 -116392162 + RMER6A LTR ERVK 4 756 0 3 884 12033 173 38 23 chr4 39237958 39238698 -116391422 + Lx6 LINE L1 5218 5966 -1494 3 884 292 147 12 62 chr4 39238673 39238753 -116391367 + Lx6 LINE L1 7379 7454 -6 3 884 3908 53 0 4 chr4 39240032 39240520 -116389600 + L1Md_F2 LINE L1 6096 6581 -1 3 884 276 100 0 0 chr4 39240662 39240702 -116389418 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 3 884 33 66 0 0 chr4 39240915 39240976 -116389144 + AT_rich Low_complexity Low_complexity 1 61 0 3 884 595 274 125 48 chr4 39240986 39241362 -116388758 + L1M1 LINE L1 5412 5816 -484 3 884 216 0 0 0 chr4 39241367 39241391 -116388729 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3 884 432 0 0 0 chr4 39242894 39242942 -116387178 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 884 1239 301 78 9 chr4 39243048 39243396 -116386724 + RMER1B Other Other 43 414 -652 3 884 2574 183 35 12 chr4 39243443 39243952 -116386168 + Lx3C LINE L1 6454 6974 -2 3 884 238 278 31 111 chr4 39244918 39245080 -116385040 - FordPrefect DNA Tip100 -601 1082 934 3 884 280 340 210 30 chr4 39245094 39245355 -116384765 + ORR1D2 LTR MaLR 43 350 -29 3 884 2979 335 56 69 chr4 39245374 39245606 -116384514 + ORR1D2-int LTR MaLR 1 223 -1357 3 884 644 306 29 0 chr4 39245606 39245815 -116384305 + B3 SINE B2 2 216 0 3 884 2979 335 56 69 chr4 39245815 39246060 -116384060 + ORR1D2-int LTR MaLR 224 448 -1132 3 884 222 37 0 0 chr4 39246060 39246087 -116384033 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 884 2979 335 56 69 chr4 39246087 39247155 -116382965 + ORR1D2-int LTR MaLR 449 1527 -53 3 884 289 325 17 78 chr4 39247155 39247331 -116382789 + ORR1C1 LTR MaLR 1 178 -206 3 884 1169 86 0 0 chr4 39247477 39247628 -116382492 - L1_Mus3 LINE L1 -456 6182 6032 3 884 2992 83 17 0 chr4 39247628 39248039 -116382081 + L1_Mus3 LINE L1 6220 6637 -1 3 884 210 116 47 0 chr4 39248051 39248094 -116382026 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 884 330 244 13 13 chr4 39249377 39249456 -116380664 - B3A SINE B2 -117 81 3 3 884 200 298 35 35 chr4 39250389 39250476 -116379644 + MIR SINE MIR 9 95 -167 3 884 21 0 0 0 chr4 39252421 39252442 -116377678 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 616 254 180 6 chr4 39253455 39253633 -116376487 + B3 SINE B2 8 216 0 3 884 228 222 44 53 chr4 39255053 39255144 -116374976 - Lx9 LINE L1 0 7644 7554 3 884 512 15 15 0 chr4 39255144 39255209 -116374911 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 3 884 228 222 44 53 chr4 39255209 39255231 -116374889 - Lx9 LINE L1 -91 7553 7532 3 884 256 333 0 0 chr4 39256685 39256748 -116373372 + RSINE1 SINE B4 82 144 -21 3 884 444 19 0 0 chr4 39256779 39256832 -116373288 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 884 650 218 0 16 chr4 39256837 39257019 -116373101 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 3 884 783 123 0 0 chr4 39257695 39257817 -116372303 + (TC)n Simple_repeat Simple_repeat 2 123 0 3 884 5921 74 1 8 chr4 39258143 39258934 -116371186 + L1_Mus2 LINE L1 5781 6566 0 3 884 199 143 0 58 chr4 39259137 39259189 -116370931 + GA-rich Low_complexity Low_complexity 3 51 0 3 884 270 82 31 47 chr4 39259197 39259261 -116370859 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 3 884 5891 55 5 5 chr4 39259536 39260271 -116369849 - L1_Mus1 LINE L1 -4 6563 5829 3 884 2967 97 7 18 chr4 39260271 39260722 -116369398 - L1_Mm LINE L1 -1275 4608 4163 3 884 3694 75 8 2 chr4 39260728 39261225 -116368895 + L1_Mm LINE L1 5250 5749 -134 3 884 4556 158 21 4 chr4 39261757 39262578 -116367542 - L1_Mur2 LINE L1 -571 5306 4472 3 884 733 169 0 19 chr4 39264970 39265127 -116364993 + GA-rich Low_complexity Low_complexity 3 156 0 3 884 528 257 125 28 chr4 39265240 39265456 -116364664 + MLT2B2 LTR ERVL 3 239 -276 3 884 527 195 12 40 chr4 39265592 39265844 -116364276 + CT-rich Low_complexity Low_complexity 1 244 0 3 884 1892 189 17 63 chr4 39266269 39266681 -116363439 + Lx7 LINE L1 6635 7027 -669 3 884 715 261 31 50 chr4 39266681 39266903 -116363217 - Lx8 LINE L1 -333 7140 6923 3 884 2061 197 21 31 chr4 39266905 39267330 -116362790 - MTC LTR MaLR 0 421 1 3 884 765 270 23 6 chr4 39267340 39267515 -116362605 + B3 SINE B2 39 216 0 3 884 210 265 0 20 chr4 39268499 39268525 -116361595 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 884 450 0 0 0 chr4 39268525 39268575 -116361545 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 884 210 265 0 20 chr4 39268575 39268598 -116361522 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 884 192 111 83 0 chr4 39269181 39269253 -116360867 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 884 492 48 0 0 chr4 39269253 39269316 -116360804 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 884 243 338 13 26 chr4 39272442 39272518 -116357602 - B4A SINE B4 0 292 218 3 884 206 0 0 65 chr4 39272518 39272549 -116357571 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 3 884 778 336 14 14 chr4 39272550 39272770 -116357350 - B4A SINE B4 -72 220 1 3 884 234 0 0 0 chr4 39273306 39273332 -116356788 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 884 310 169 0 30 chr4 39273335 39273402 -116356718 - Lx5 LINE L1 -5 7045 6981 3 884 4507 147 30 66 chr4 39273646 39274299 -116355821 - RMER17A2 LTR ERVK -28 878 298 3 884 1041 89 0 0 chr4 39274299 39274445 -116355675 + (GGAGA)n Simple_repeat Simple_repeat 1 146 0 3 884 4507 142 30 60 chr4 39274445 39274734 -116355386 - RMER17A2 LTR ERVK -609 297 1 3 884 223 380 0 12 chr4 39274997 39275077 -116355043 - ID4 SINE ID 0 83 5 3 884 1658 251 38 2 chr4 39276554 39276949 -116353171 + MTD LTR MaLR 5 413 -6 3 884 1993 221 106 32 chr4 39276955 39277706 -116352414 + MTD-int LTR MaLR 1 615 -643 3 884 915 254 19 0 chr4 39278699 39278904 -116351216 - B3 SINE B2 -6 210 2 3 884 878 312 46 43 chr4 39279043 39279257 -116350863 - MTEb LTR MaLR -2 377 166 3 884 1142 112 6 0 chr4 39279257 39279435 -116350685 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 884 878 312 46 43 chr4 39279435 39279589 -116350531 - MTEb LTR MaLR -214 165 8 3 884 315 190 17 0 chr4 39279607 39279665 -116350455 + HAL1-3A_ME LINE L1 1969 2027 -831 3 884 221 292 0 0 chr4 39279667 39279732 -116350388 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 884 213 94 0 0 chr4 39279740 39279772 -116350348 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 884 656 334 83 37 chr4 39280261 39280609 -116349511 - MER77 LTR ERVL -11 596 233 3 884 631 302 37 45 chr4 39280649 39280895 -116349225 - MTEb LTR MaLR -12 367 124 3 884 510 61 0 0 chr4 39281023 39281089 -116349031 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 884 936 298 89 36 chr4 39281140 39281300 -116348820 - MTE-int LTR MaLR 0 1370 1239 3 884 267 31 0 0 chr4 39281300 39281332 -116348788 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 884 2532 311 96 51 chr4 39281332 39281825 -116348295 - MTE-int LTR MaLR -132 1238 663 3 884 1458 90 49 9 chr4 39281825 39282050 -116348070 - L1Md_F2 LINE L1 -1 6581 6348 3 884 2532 301 80 33 chr4 39282050 39282622 -116347498 - MTE-int LTR MaLR -831 749 160 3 884 408 285 86 46 chr4 39282620 39282771 -116347349 + MTD-int LTR MaLR 734 890 -690 3 884 634 264 7 0 chr4 39282765 39282905 -116347215 - MTEb-int LTR MaLR -1421 159 19 3 884 818 355 19 32 chr4 39282927 39283246 -116346874 - MTEb LTR MaLR -5 374 61 3 884 2114 114 50 128 chr4 39283246 39283761 -116346359 - IAPLTR2_Mm LTR ERVK 0 475 1 3 884 818 355 19 32 chr4 39283761 39283811 -116346309 - MTEb LTR MaLR -319 60 10 3 884 284 406 16 21 chr4 39283809 39284000 -116346120 - MER77 LTR ERVL -412 195 6 3 884 519 262 222 96 chr4 39284711 39284926 -116345194 + MTE2a LTR MaLR 4 204 -175 3 884 396 0 0 0 chr4 39284926 39284970 -116345150 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 3 884 519 262 222 96 chr4 39284970 39285088 -116345032 + MTE2a LTR MaLR 205 378 -1 3 884 345 402 0 9 chr4 39285292 39285405 -116344715 - PB1D7 SINE Alu -7 113 2 3 884 689 254 134 5 chr4 39286059 39286253 -116343867 + MTE2b LTR MaLR 161 379 0 3 884 330 331 86 0 chr4 39287061 39287200 -116342920 - MIR SINE MIR 0 262 112 3 884 26 0 0 0 chr4 39287310 39287336 -116342784 + AT_rich Low_complexity Low_complexity 1 26 0 3 884 345 47 0 0 chr4 39287343 39287386 -116342734 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 884 2900 82 0 0 chr4 39287814 39288193 -116341927 - L1_Mus1 LINE L1 0 6567 6189 3 884 26 30 0 0 chr4 39288590 39288623 -116341497 + AT_rich Low_complexity Low_complexity 1 33 0 3 884 2555 224 27 16 chr4 39289052 39289745 -116340375 + Lx9 LINE L1 6939 7639 -5 3 884 25 0 0 0 chr4 39289745 39289770 -116340350 + AT_rich Low_complexity Low_complexity 1 25 0 3 884 426 320 114 48 chr4 39289795 39290067 -116340053 + B4A SINE B4 2 291 -1 3 884 347 252 63 36 chr4 39290749 39290860 -116339260 + PB1D10 SINE Alu 4 117 0 3 884 989 217 5 5 chr4 39293094 39293293 -116336827 + B3 SINE B2 1 199 -17 3 884 687 25 0 0 chr4 39293377 39293458 -116336662 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 3 884 465 221 102 9 chr4 39293475 39293602 -116336518 - B1_Mus1 SINE Alu 0 150 10 3 884 4285 200 23 29 chr4 39293620 39294683 -116335437 + L1_Mur2 LINE L1 4003 5058 -819 3 884 36140 45 0 3 chr4 39294691 39300978 -116329142 - L1Md_T LINE L1 0 6585 220 3 884 553 233 8 0 chr4 39301009 39301138 -116328982 + Lx5 LINE L1 6918 7047 -3 3 884 230 56 28 0 chr4 39301204 39301240 -116328880 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3 884 6808 107 14 27 chr4 39301249 39302300 -116327820 - Lx3B LINE L1 -1 6972 5935 3 884 778 286 31 8 chr4 39302300 39302557 -116327563 - Lx6 LINE L1 -599 6861 6599 3 884 807 282 45 25 chr4 39302557 39302872 -116327248 + Lx5 LINE L1 6061 6610 -1086 3 884 3106 147 25 19 chr4 39304747 39305274 -116324846 + Lx2B LINE L1 6469 6998 -2 3 884 921 198 0 42 chr4 39305815 39306005 -116324115 + B3A SINE B2 1 182 -16 3 884 776 67 8 0 chr4 39306037 39306157 -116323963 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 3 884 180 156 31 0 chr4 39306838 39306870 -116323250 + L2a LINE L2 3392 3424 -2 3 884 491 333 0 0 chr4 39307165 39307303 -116322817 + B1F2 SINE Alu 2 139 -10 4 884 660 59 0 0 chr4 39307303 39307388 -116322732 + (CATA)n Simple_repeat Simple_repeat 2 86 0 4 884 4421 151 36 75 chr4 39308373 39309369 -116320751 + L1_Mur2 LINE L1 4867 5800 -77 4 884 939 157 162 0 chr4 39309370 39309555 -116320565 - URR1A DNA MER1_type -10 216 2 4 884 207 0 0 0 chr4 39309699 39309722 -116320398 + (A)n Simple_repeat Simple_repeat 1 23 0 4 884 1208 256 52 47 chr4 39309942 39309987 -116320133 - MT2B LTR ERVL 0 601 555 4 884 603 27 0 0 chr4 39309987 39310060 -116320060 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 4 884 1208 274 74 66 chr4 39310060 39310540 -116319580 - MT2B LTR ERVL -47 554 2 4 884 27 0 0 0 chr4 39311436 39311463 -116318657 + AT_rich Low_complexity Low_complexity 1 27 0 4 884 3948 187 34 13 chr4 39312065 39312895 -116317225 + Lx4B LINE L1 6192 7038 -20 4 884 978 131 7 7 chr4 39313212 39313358 -116316762 + B1_Mus1 SINE Alu 1 146 -2 4 884 211 192 39 0 chr4 39313477 39313529 -116316591 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 4 884 5041 183 20 5 chr4 39313533 39314451 -116315669 - Lx5 LINE L1 -3 7047 6117 4 884 657 283 76 0 chr4 39314856 39315040 -116315080 + B3 SINE B2 3 200 -16 4 884 526 342 136 8 chr4 39315723 39315965 -116314155 + Tigger7 DNA MER2_type 26 298 -2193 4 884 346 310 75 31 chr4 39315970 39316130 -116313990 + Tigger7 DNA MER2_type 2293 2458 -33 4 884 1150 59 0 0 chr4 39316494 39316630 -116313490 + B1_Mm SINE Alu 2 137 -10 4 884 203 0 0 36 chr4 39316630 39316658 -116313462 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 884 587 297 67 75 chr4 39317124 39317495 -116312625 + MLT1B LTR MaLR 13 380 -10 4 884 356 314 87 48 chr4 39317507 39317738 -116312382 - L1ME1 LINE L1 -203 5976 5737 4 884 850 293 120 16 chr4 39317738 39318054 -116312066 + ORR1E LTR MaLR 1 349 -10 4 884 555 273 117 29 chr4 39318084 39318502 -116311618 - L1ME1 LINE L1 -456 5723 5269 4 884 1086 296 82 34 chr4 39319390 39319768 -116310352 + MTD LTR MaLR 21 416 -3 4 884 258 377 68 32 chr4 39320523 39320548 -116309572 - MLT1I LTR MaLR -65 346 323 4 884 429 95 0 0 chr4 39320548 39320611 -116309509 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 884 258 377 68 32 chr4 39320611 39320804 -116309316 - MLT1I LTR MaLR -89 322 120 4 884 37 62 0 0 chr4 39320866 39320931 -116309189 + AT_rich Low_complexity Low_complexity 1 65 0 4 884 567 14 0 0 chr4 39321085 39321157 -116308963 - L1Md_A LINE L1 -1 6581 6510 4 885 503 252 0 76 chr4 39321861 39322033 -116308087 - MTD-int LTR MaLR -239 1019 861 4 885 941 276 35 98 chr4 39322053 39322639 -116307481 - MTD-int LTR MaLR -490 880 6 4 885 757 288 79 84 chr4 39322653 39322982 -116307138 - MTD LTR MaLR -14 405 72 4 885 2271 79 13 10 chr4 39322982 39323290 -116306830 - RLTR27 LTR ERVK 0 309 1 4 885 757 288 79 84 chr4 39323290 39323366 -116306754 - MTD LTR MaLR -348 71 2 4 885 188 111 28 0 chr4 39323640 39323676 -116306444 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 885 299 357 70 78 chr4 39323788 39324031 -116306089 - MT2A LTR ERVL -173 360 120 4 885 236 374 14 35 chr4 39324037 39324181 -116305939 - MTEa LTR MaLR -238 141 1 4 885 194 62 0 30 chr4 39324762 39324795 -116305325 + (TTATA)n Simple_repeat Simple_repeat 5 36 0 4 885 951 305 45 57 chr4 39324949 39325303 -116304817 + MTEb LTR MaLR 25 374 -5 4 885 322 264 10 62 chr4 39325926 39326023 -116304097 - MLT1B LTR MaLR -50 340 249 4 885 369 266 28 14 chr4 39326233 39326374 -116303746 + (TATG)n Simple_repeat Simple_repeat 1 143 0 4 885 351 302 8 16 chr4 39326379 39326500 -116303620 + Lx8 LINE L1 7209 7328 -145 4 885 180 179 0 0 chr4 39326645 39326684 -116303436 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 885 236 148 56 0 chr4 39327041 39327095 -116303025 + G-rich Low_complexity Low_complexity 6 62 0 4 885 306 315 22 37 chr4 39327809 39327944 -116302176 + MLT1E3 LTR MaLR 40 172 -452 4 885 288 357 104 32 chr4 39327916 39328136 -116301984 + MLT1E3 LTR MaLR 111 346 -281 4 885 930 133 119 26 chr4 39328187 39328380 -116301740 - Lx2 LINE L1 -12 6985 6775 4 885 5553 124 51 6 chr4 39328378 39329318 -116300802 - Lx2 LINE L1 -352 6645 5664 4 885 2927 61 200 9 chr4 39329321 39329751 -116300369 + RLTR1B LTR ERV1 1 512 0 4 885 32242 18 1 2 chr4 39329751 39332170 -116297950 + MMERGLN-int LTR ERV1 1 2419 -5137 4 885 3503 18 2 0 chr4 39332170 39332565 -116297555 - MTA_Mm LTR MaLR 0 396 1 4 885 44425 20 4 1 chr4 39332565 39337684 -116292436 + MMERGLN-int LTR ERV1 2420 7556 0 4 885 2878 68 200 9 chr4 39337684 39338114 -116292006 + RLTR1B LTR ERV1 1 512 0 4 885 3139 167 5 14 chr4 39338116 39338698 -116291422 - Lx2 LINE L1 -221 5662 5086 4 885 5841 81 34 11 chr4 39338696 39339279 -116290841 - L1VL4 LINE L1 -1717 1842 1249 4 885 1887 34 29 12 chr4 39339279 39339521 -116290599 - L1Md_F3 LINE L1 0 6584 6339 4 885 5841 88 51 6 chr4 39339521 39340519 -116289601 - L1VL4 LINE L1 -2311 1248 195 4 885 1171 81 58 0 chr4 39340567 39340739 -116289381 - L1_Mus1 LINE L1 0 6567 6386 4 885 293 331 79 90 chr4 39341701 39341873 -116288247 - RMER13A LTR ERVK -593 267 95 4 885 4249 40 77 0 chr4 39341873 39342393 -116287727 - LTRIS2 LTR ERV1 0 564 5 4 885 293 331 79 90 chr4 39342393 39342486 -116287634 - RMER13A LTR ERVK -766 94 5 4 885 240 234 95 142 chr4 39342955 39343124 -116286996 + ORR1C1 LTR MaLR 28 188 -190 4 885 1703 177 98 43 chr4 39344280 39344699 -116285421 - RMER10A LTR ERVL 0 442 1 4 885 356 331 92 6 chr4 39346233 39346397 -116283723 + MLT1E3 LTR MaLR 27 204 -420 4 885 670 304 133 8 chr4 39346420 39346675 -116283445 + B4 SINE B4 6 292 0 4 885 287 272 213 30 chr4 39346920 39347117 -116283003 + RMER20B LTR ERVK 180 412 -215 4 885 376 325 86 50 chr4 39347279 39347499 -116282621 + MLT1B LTR MaLR 38 265 -125 4 885 983 68 7 13 chr4 39347761 39347911 -116282209 + L1Md_F2 LINE L1 6434 6582 0 4 885 1551 120 0 34 chr4 39348030 39348263 -116281857 - URR1B DNA MER1_type 0 225 1 4 885 225 246 35 0 chr4 39348644 39348701 -116281419 - RMER15 LTR ERVL -443 132 74 4 885 315 65 0 0 chr4 39351524 39351570 -116278550 + (TTAAA)n Simple_repeat Simple_repeat 2 47 0 4 885 1621 279 74 13 chr4 39352911 39353625 -116276495 + Lx9 LINE L1 6803 7560 -84 4 885 991 77 31 0 chr4 39354158 39354288 -116275832 + B1_Mus1 SINE Alu 2 135 -13 4 885 180 0 0 0 chr4 39354288 39354308 -116275812 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 885 203 231 30 30 chr4 39354329 39354369 -116275751 + (CATA)n Simple_repeat Simple_repeat 3 42 0 4 885 237 33 0 0 chr4 39354369 39354399 -116275721 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 885 203 231 30 30 chr4 39354399 39354425 -116275695 + (CATA)n Simple_repeat Simple_repeat 3 28 0 4 885 463 264 87 8 chr4 39354620 39354746 -116275374 + B1_Mur2 SINE Alu 7 142 -7 4 885 5997 160 29 19 chr4 39354773 39355264 -116274856 + RLTR25A LTR ERVK 5 505 -598 4 885 297 0 0 0 chr4 39355264 39355297 -116274823 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 885 5997 160 29 19 chr4 39355297 39355894 -116274226 + RLTR25A LTR ERVK 506 1102 -1 4 885 417 115 0 0 chr4 39356117 39356178 -116273942 + RLTR25A LTR ERVK 352 412 -691 4 885 208 143 0 0 chr4 39356383 39356418 -116273702 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 4 885 442 331 72 42 chr4 39356439 39356606 -116273514 - B3A SINE B2 -25 173 2 4 885 395 253 170 8 chr4 39356709 39356944 -116273176 + L1M4 LINE L1 3020 3292 -2854 4 885 516 194 19 10 chr4 39357095 39357199 -116272921 - Lx9 LINE L1 -1727 5917 5813 4 885 2577 173 237 7 chr4 39357261 39357860 -116272260 - RMER19A LTR ERVK 0 737 1 4 885 373 233 6 25 chr4 39358038 39358201 -116271919 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 885 1158 306 16 27 chr4 39358279 39358722 -116271398 + Lx9 LINE L1 6402 6839 -805 4 885 364 320 54 54 chr4 39358793 39359179 -116270941 + L1MB7 LINE L1 5504 5889 -295 4 885 24 0 0 0 chr4 39360034 39360058 -116270062 + AT_rich Low_complexity Low_complexity 1 24 0 4 885 910 234 29 5 chr4 39360058 39360264 -116269856 + B3 SINE B2 1 211 -5 4 885 24 53 0 0 chr4 39360366 39360404 -116269716 + AT_rich Low_complexity Low_complexity 1 38 0 4 885 395 253 0 24 chr4 39361445 39361530 -116268590 - B4A SINE B4 -206 86 4 4 885 1060 47 7 7 chr4 39361574 39361724 -116268396 - L1Md_F2 LINE L1 0 6582 6433 4 885 449 34 17 0 chr4 39361791 39361850 -116268270 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 4 885 518 328 91 11 chr4 39362497 39362673 -116267447 + B4A SINE B4 1 190 -102 4 885 441 393 41 30 chr4 39362793 39363155 -116266965 - L2 LINE L2 -965 2454 2089 4 885 491 326 90 43 chr4 39363383 39363662 -116266458 + B4A SINE B4 1 292 0 4 885 840 137 0 0 chr4 39363663 39363802 -116266318 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 885 332 89 17 35 chr4 39365201 39365259 -116264861 - RMER6B LTR ERVK 0 461 405 4 885 4061 118 70 12 chr4 39365260 39365935 -116264185 + RMER17A2 LTR ERVK 1 714 -192 4 885 899 154 68 21 chr4 39365936 39366128 -116263992 - RMER6B LTR ERVK -253 208 8 4 885 1222 133 47 4 chr4 39366143 39366246 -116263874 + MYSERV6-int LTR ERVK 8652 8764 -195 4 885 198 0 0 0 chr4 39366246 39366268 -116263852 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 885 1222 133 47 4 chr4 39366268 39366398 -116263722 + MYSERV6-int LTR ERVK 8765 8895 -64 4 885 502 335 10 80 chr4 39367357 39367558 -116262562 + B3A SINE B2 2 188 -7 4 885 5485 65 14 4 chr4 39367784 39368497 -116261623 + L1Md_F2 LINE L1 5853 6572 -10 4 885 1201 68 0 0 chr4 39368508 39368656 -116261464 + B1_Mus1 SINE Alu 1 148 0 4 885 23 68 0 0 chr4 39368658 39368702 -116261418 + AT_rich Low_complexity Low_complexity 1 44 0 4 885 223 85 43 0 chr4 39368736 39368783 -116261337 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 885 32 75 0 0 chr4 39368831 39368898 -116261222 + AT_rich Low_complexity Low_complexity 1 67 0 4 885 561 30 0 0 chr4 39368985 39369052 -116261068 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 885 1068 116 0 0 chr4 39369052 39369199 -116260921 - B1_Mus2 SINE Alu 0 147 1 4 885 237 94 0 0 chr4 39369529 39369561 -116260559 - Lx LINE L1 -457 6197 6166 4 885 3266 93 2 2 chr4 39369561 39370012 -116260108 + Lx LINE L1 6197 6647 -7 4 885 22 0 0 0 chr4 39370012 39370034 -116260086 + AT_rich Low_complexity Low_complexity 1 22 0 4 885 41 36 0 0 chr4 39370253 39370308 -116259812 + AT_rich Low_complexity Low_complexity 1 55 0 4 885 411 297 73 31 chr4 39371442 39371921 -116258199 - L1M3 LINE L1 -1519 4621 4153 4 885 24 0 0 0 chr4 39372632 39372656 -116257464 + AT_rich Low_complexity Low_complexity 1 24 0 4 885 966 17 0 0 chr4 39372656 39372771 -116257349 - L1Md_F2 LINE L1 -580 6002 5888 5 885 4296 39 6 9 chr4 39372771 39373295 -116256825 + L1Md_F2 LINE L1 6058 6579 -3 5 885 189 74 0 0 chr4 39373441 39373468 -116256652 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 885 774 179 0 0 chr4 39373873 39374041 -116256079 + GA-rich Low_complexity Low_complexity 1 168 0 5 885 21 0 0 0 chr4 39374300 39374321 -116255799 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 574 299 28 0 chr4 39375998 39376175 -116253945 + B3A SINE B2 1 182 -16 5 885 1167 287 61 46 chr4 39376239 39376722 -116253398 - L1MB2 LINE L1 -48 6123 5613 5 885 2600 62 6 0 chr4 39376722 39377063 -116253057 + L1Md_F2 LINE L1 6240 6582 0 5 885 1167 287 61 46 chr4 39377063 39377230 -116252890 - L1MB2 LINE L1 -559 5612 5463 5 885 415 196 93 0 chr4 39377258 39377365 -116252755 - RLTR11A2 LTR ERVK 0 527 411 5 885 405 0 0 0 chr4 39377365 39377410 -116252710 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 885 917 219 11 122 chr4 39377410 39377680 -116252440 - RLTR11A2 LTR ERVK -287 240 1 5 885 7372 15 0 0 chr4 39377696 39378577 -116251543 + L1Md_T LINE L1 4706 5586 -297 5 885 9027 5 0 0 chr4 39378577 39379573 -116250547 + L1Md_T LINE L1 5587 6582 0 5 885 2109 196 81 4 chr4 39379622 39380138 -116249982 - MYSERV-int LTR ERVK -61 6489 5934 5 885 250 103 26 0 chr4 39380139 39380178 -116249942 - MYSERV-int LTR ERVK -577 5973 5934 5 885 254 170 21 0 chr4 39380171 39380218 -116249902 - MYSERV-int LTR ERVK -569 5981 5934 5 885 254 170 21 0 chr4 39380211 39380258 -116249862 - MYSERV-int LTR ERVK -569 5981 5934 5 885 254 170 21 0 chr4 39380251 39380298 -116249822 - MYSERV-int LTR ERVK -569 5981 5934 5 885 254 170 21 0 chr4 39380331 39380378 -116249742 - MYSERV-int LTR ERVK -569 5981 5934 5 885 254 170 21 0 chr4 39380371 39380418 -116249702 - MYSERV-int LTR ERVK -569 5981 5934 5 885 252 139 23 0 chr4 39380495 39380538 -116249582 - MYSERV-int LTR ERVK -573 5977 5934 5 885 254 170 21 0 chr4 39380531 39380578 -116249542 - MYSERV-int LTR ERVK -569 5981 5934 5 885 1715 200 57 68 chr4 39380619 39381203 -116248917 - MYSERV6-int LTR ERVK -561 8398 7822 5 885 254 252 24 87 chr4 39381180 39381306 -116248814 - MYSERV-int LTR ERVK -1122 5428 5311 5 885 285 319 51 79 chr4 39381312 39381489 -116248631 - RMER4A LTR ERVK -45 421 250 5 885 581 211 17 86 chr4 39381491 39381799 -116248321 - MYSERV-int LTR ERVK -413 5367 5204 5 885 482 217 8 129 chr4 39381823 39381955 -116248165 - RLTR11A2 LTR ERVK -411 116 1 5 885 208 216 73 73 chr4 39381956 39382011 -116248109 - MIR SINE MIR -36 226 172 5 885 850 342 41 8 chr4 39383072 39383340 -116246780 + B4A SINE B4 2 278 -14 5 885 249 33 0 0 chr4 39383371 39383401 -116246719 + (CATA)n Simple_repeat Simple_repeat 1 30 0 5 885 242 306 93 0 chr4 39383723 39383831 -116246289 + RMER15 LTR ERVL 381 498 -77 5 885 384 40 0 0 chr4 39383915 39383965 -116246155 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 885 568 275 116 12 chr4 39385540 39385713 -116244407 + B3A SINE B2 2 192 -6 5 885 829 321 70 9 chr4 39385705 39386145 -116243975 - Charlie1a DNA MER1_type -158 1297 831 5 885 524 191 0 0 chr4 39386155 39386244 -116243876 + RLTR18B LTR ERVK 3 91 -421 5 885 1017 152 0 0 chr4 39386261 39386425 -116243695 + L1_Mus3 LINE L1 6247 6410 -228 5 885 447 110 0 24 chr4 39386425 39386509 -116243611 + Lx LINE L1 6572 6653 -1 5 885 396 0 0 0 chr4 39386550 39386594 -116243526 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 5 885 1889 181 49 96 chr4 39386607 39387036 -116243084 + RLTR18B LTR ERVK 99 507 -5 5 885 420 175 30 30 chr4 39387088 39387188 -116242932 - ORR1D1 LTR MaLR -1 378 279 5 885 568 285 86 15 chr4 39387191 39387407 -116242713 - ORR1C2 LTR MaLR -3 381 149 5 885 870 292 42 57 chr4 39387448 39388008 -116242112 - ORR1D1 LTR MaLR -64 315 1 5 885 388 290 128 16 chr4 39388047 39388289 -116241831 - Charlie1a DNA MER1_type -790 665 397 5 885 21 0 0 0 chr4 39388620 39388641 -116241479 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 582 114 0 0 chr4 39388689 39388777 -116241343 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 885 243 0 0 0 chr4 39389368 39389395 -116240725 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 885 3191 82 11 19 chr4 39389543 39390004 -116240116 + L1Md_F2 LINE L1 6123 6579 -3 5 885 210 71 0 0 chr4 39390008 39390036 -116240084 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 5 885 987 329 37 46 chr4 39390185 39390770 -116239350 - Lx6 LINE L1 -26 7434 6478 5 885 1057 267 52 39 chr4 39390766 39391214 -116238906 - Lx6 LINE L1 -687 6363 5875 5 885 553 49 12 12 chr4 39391236 39391318 -116238802 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 885 315 0 0 0 chr4 39391318 39391352 -116238768 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 885 805 316 35 7 chr4 39391715 39391999 -116238121 + B4A SINE B4 1 292 0 5 885 5703 183 17 52 chr4 39392007 39393150 -116236970 + RLTR25A LTR ERVK 1 1103 0 5 885 252 0 0 0 chr4 39393156 39393184 -116236936 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 885 612 276 35 0 chr4 39394233 39394403 -116235717 - Lx6 LINE L1 -873 6587 6412 5 885 1258 257 42 25 chr4 39394409 39394718 -116235402 + MTD LTR MaLR 105 405 -14 5 885 315 0 0 0 chr4 39394840 39394875 -116235245 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 885 1044 267 103 45 chr4 39394911 39395445 -116234675 + Lx8 LINE L1 6901 7465 -8 5 885 519 333 28 28 chr4 39395483 39395662 -116234458 + B3A SINE B2 9 187 -11 5 885 464 217 138 9 chr4 39395662 39395778 -116234342 + B1F SINE Alu 11 141 -8 5 885 213 178 27 27 chr4 39397326 39397401 -116232719 + C-rich Low_complexity Low_complexity 5 79 0 5 885 318 26 0 0 chr4 39399181 39399220 -116230900 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 885 566 51 13 0 chr4 39399231 39399309 -116230811 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 5 885 244 263 92 0 chr4 39400016 39400092 -116230028 + L1MC4 LINE L1 7757 7839 -203 5 885 273 304 9 29 chr4 39400683 39400788 -116229332 + MLT1H2 LTR MaLR 370 472 -17 5 885 1898 109 33 58 chr4 39400977 39401188 -116228932 + ORR1A4 LTR MaLR 6 202 -127 5 885 369 0 0 0 chr4 39401188 39401229 -116228891 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 885 1898 109 33 58 chr4 39401229 39401347 -116228773 + ORR1A4 LTR MaLR 203 326 -3 5 885 748 85 157 33 chr4 39401912 39402033 -116228087 + B1_Mus1 SINE Alu 1 136 -12 5 885 312 48 0 0 chr4 39402036 39402078 -116228042 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 5 885 228 163 0 0 chr4 39403209 39403252 -116226868 + T-rich Low_complexity Low_complexity 1 43 0 5 885 1123 69 14 0 chr4 39403252 39403396 -116226724 - B1_Mus2 SINE Alu 0 147 2 5 885 196 171 0 68 chr4 39403719 39403763 -116226357 + L3 LINE CR1 1980 2020 -2469 5 885 195 129 0 0 chr4 39403803 39403834 -116226286 + (TATG)n Simple_repeat Simple_repeat 4 34 0 5 885 6892 58 37 17 chr4 39404764 39404833 -116225287 - L1Md_F2 LINE L1 0 6582 6517 5 885 204 40 0 0 chr4 39404833 39404858 -116225262 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 5 885 13232 63 14 11 chr4 39404858 39407271 -116222849 - L1Md_F2 LINE L1 -66 6516 4082 5 885 4013 72 0 0 chr4 39407269 39407835 -116222285 + L1Md_F2 LINE L1 3544 4109 -1774 5 885 221 250 22 36 chr4 39408165 39408194 -116221926 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 885 218 32 32 0 chr4 39408194 39408225 -116221895 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 5 885 221 250 22 36 chr4 39408225 39408332 -116221788 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 885 356 0 0 22 chr4 39408332 39408377 -116221743 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 885 185 0 40 0 chr4 39409030 39409055 -116221065 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 885 1093 78 7 0 chr4 39409061 39409203 -116220917 - B1_Mus1 SINE Alu -1 147 5 5 885 1712 267 80 83 chr4 39409565 39410142 -116219978 + RMER15 LTR ERVL 1 575 0 5 885 3346 78 0 9 chr4 39410817 39411268 -116218852 + L1Md_F2 LINE L1 6117 6563 -19 5 885 317 354 60 107 chr4 39412191 39412574 -116217546 + MLT1A0 LTR MaLR 1 365 0 5 885 26 0 0 0 chr4 39414038 39414064 -116216056 + AT_rich Low_complexity Low_complexity 1 26 0 5 885 717 58 0 0 chr4 39414108 39414212 -116215908 - L1Md_T LINE L1 0 6582 6479 5 885 304 346 10 29 chr4 39414674 39414778 -116215342 - RSINE1 SINE B4 -21 144 43 5 885 242 264 133 55 chr4 39415902 39416030 -116214090 - LTR16A LTR ERVL -27 424 287 5 885 354 311 85 31 chr4 39416100 39416628 -116213492 - L1M4 LINE L1 -1141 5005 4446 5 885 200 34 0 33 chr4 39416758 39416788 -116213332 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 885 384 310 82 29 chr4 39416800 39417176 -116212944 - L1M4 LINE L1 -1907 4239 3844 5 885 2543 81 19 3 chr4 39417188 39417558 -116212562 + L1_Mus4 LINE L1 5761 6136 -500 5 885 32 0 0 0 chr4 39417598 39417630 -116212490 + AT_rich Low_complexity Low_complexity 1 32 0 5 885 4628 77 6 6 chr4 39420211 39420839 -116209281 - L1Md_F2 LINE L1 -1 6581 5954 5 885 343 297 22 90 chr4 39420870 39421092 -116209028 - Lx8 LINE L1 -61 7412 7206 5 885 222 118 0 0 chr4 39421310 39421344 -116208776 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 5 885 238 283 75 21 chr4 39421384 39421478 -116208642 - MER58B DNA MER1_type -3 338 240 5 885 1937 289 79 4 chr4 39422085 39422780 -116207340 - Lx8 LINE L1 -521 6952 6206 5 885 422 289 55 68 chr4 39422909 39423202 -116206918 + B4A SINE B4 4 292 0 5 885 1419 159 65 8 chr4 39423634 39423881 -116206239 - ORR1C2 LTR MaLR 0 384 124 5 885 483 18 0 0 chr4 39423926 39423982 -116206138 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 885 204 67 0 0 chr4 39424071 39424101 -116206019 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 5 885 236 262 87 33 chr4 39424393 39424543 -116205577 + L1MEd LINE L1 6 163 -5956 5 885 229 273 18 0 chr4 39424865 39424918 -116205202 + MER47A DNA MER2_type 45 92 -274 5 885 5422 174 55 24 chr4 39424918 39425684 -116204436 + RMER12 LTR ERVK 1 767 -555 5 885 348 111 0 0 chr4 39425684 39425738 -116204382 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 885 5422 207 109 55 chr4 39425738 39426250 -116203870 + RMER12 LTR ERVK 768 1112 -210 5 885 612 301 50 47 chr4 39426365 39426644 -116203476 + MER47A DNA MER2_type 86 365 -1 5 885 7895 150 74 21 chr4 39427137 39428645 -116201475 + ORR1A2-int LTR MaLR 375 1963 0 5 885 2132 129 6 3 chr4 39428645 39428963 -116201157 + ORR1A2 LTR MaLR 1 319 -8 5 885 232 217 8 74 chr4 39429164 39429246 -116200874 - BC1_Mm scRNA scRNA -3 80 3 5 885 512 235 28 42 chr4 39429251 39429393 -116200727 - B1F SINE Alu 0 149 10 5 885 315 49 0 0 chr4 39430919 39430960 -116199160 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 885 219 290 48 39 chr4 39431175 39431279 -116198841 - MER5A DNA MER1_type 0 189 85 5 885 447 306 18 18 chr4 39431802 39431915 -116198205 + MER58A DNA MER1_type 1 113 -111 5 885 232 233 17 0 chr4 39432460 39432520 -116197600 - MLT1A LTR MaLR -5 369 309 5 885 249 139 0 0 chr4 39432746 39432789 -116197331 + (T)n Simple_repeat Simple_repeat 1 43 0 5 885 1140 68 7 0 chr4 39432791 39432937 -116197183 - B1_Mus2 SINE Alu 0 147 1 5 885 550 308 0 22 chr4 39432975 39433111 -116197009 + ID_B1 SINE B4 80 212 -12 5 885 672 318 38 73 chr4 39433253 39433596 -116196524 + MTD LTR MaLR 74 404 -15 5 885 421 311 13 19 chr4 39433609 39433763 -116196357 + MTD-int LTR MaLR 1 153 -1105 5 885 1505 276 45 33 chr4 39433775 39434548 -116195572 + L1_Rod LINE L1 4411 5206 -937 5 885 1443 134 9 0 chr4 39434632 39434849 -116195271 - URR1B DNA MER1_type 0 225 7 6 885 528 311 51 15 chr4 39434958 39435154 -116194966 - RMER15 LTR ERVL -14 561 359 6 885 180 0 0 0 chr4 39435904 39435924 -116194196 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 885 280 310 108 40 chr4 39436652 39436756 -116193364 - L1M2 LINE L1 -419 5881 5781 6 885 300 27 0 0 chr4 39436756 39436793 -116193327 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 885 356 292 126 34 chr4 39436793 39437128 -116192992 - L1M2 LINE L1 -520 5780 5408 6 885 542 52 0 0 chr4 39437128 39437205 -116192915 + L1Md_F2 LINE L1 6502 6578 -4 6 885 316 292 126 34 chr4 39437205 39437339 -116192781 - L1M2 LINE L1 -893 5407 5268 6 885 11322 132 19 12 chr4 39437382 39439285 -116190835 - Lx LINE L1 -1 6653 4738 6 885 324 0 0 0 chr4 39439285 39439321 -116190799 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 885 11322 148 9 3 chr4 39439321 39440136 -116189984 - Lx LINE L1 -1146 4737 3916 6 885 344 298 122 18 chr4 39440262 39440426 -116189694 - L1M2 LINE L1 -983 5160 4980 6 885 201 319 141 45 chr4 39440658 39440744 -116189376 - MIRb SINE MIR -39 229 122 6 885 662 281 154 6 chr4 39440744 39441055 -116189065 + ORR1E LTR MaLR 1 357 -2 6 885 201 319 141 45 chr4 39441055 39441145 -116188975 - MIRb SINE MIR -147 121 36 6 885 659 266 115 36 chr4 39443286 39443539 -116186581 - RMER21B LTR ERV1 -275 567 295 6 885 991 206 18 22 chr4 39443779 39444003 -116186117 - RMER17C LTR ERVK 0 410 188 6 885 248 378 45 0 chr4 39444003 39444159 -116185961 + L1MEc LINE L1 163 325 -6075 6 885 328 293 76 76 chr4 39444265 39444547 -116185573 - MTEa LTR MaLR 0 379 80 6 885 520 53 13 13 chr4 39444731 39444808 -116185312 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 6 885 295 380 78 29 chr4 39445958 39446164 -116183956 - ERVL-E-int LTR ERVL -2909 2758 2543 6 885 312 400 20 7 chr4 39447764 39447910 -116182210 - B4A SINE B4 -143 149 2 6 885 513 288 99 50 chr4 39448794 39449097 -116181023 + L1_Rod LINE L1 5328 5645 -202 6 885 26 50 0 0 chr4 39449342 39449382 -116180738 + AT_rich Low_complexity Low_complexity 1 40 0 6 885 591 15 0 0 chr4 39451151 39451219 -116178901 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 885 409 308 49 4 chr4 39451315 39451456 -116178664 - B4A SINE B4 -80 144 2 6 885 498 331 52 58 chr4 39451895 39452066 -116178054 - ORR1D2 LTR MaLR 0 370 194 6 885 3417 38 0 28 chr4 39452066 39452500 -116177620 - L1Md_F3 LINE L1 -14 6570 6149 6 110 498 331 52 58 chr4 39452500 39452693 -116177427 - ORR1D2 LTR MaLR -177 193 9 6 886 1192 286 61 12 chr4 39453219 39453565 -116176555 - MTE2b LTR MaLR -16 363 1 6 886 423 0 0 0 chr4 39453693 39453740 -116176380 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 6 886 231 298 9 19 chr4 39453884 39453990 -116176130 - Lx7 LINE L1 -18 7678 7574 6 886 426 20 0 0 chr4 39454020 39454071 -116176049 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 886 242 159 0 0 chr4 39454266 39454310 -116175810 + Lx6 LINE L1 6844 6887 -573 6 886 2010 244 62 23 chr4 39454459 39454987 -116175133 + Lx6 LINE L1 6912 7460 0 6 886 1741 211 77 23 chr4 39455628 39455717 -116174403 - RLTR20D LTR ERVK 0 568 479 6 886 441 0 0 0 chr4 39455717 39455766 -116174354 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 886 1741 211 77 23 chr4 39455766 39456107 -116174013 - RLTR20D LTR ERVK -90 478 117 6 886 241 266 142 103 chr4 39458225 39458380 -116171740 - RLTR24 LTR ERV1 -48 481 321 6 886 291 347 24 8 chr4 39458520 39458645 -116171475 - RLTR24 LTR ERV1 -402 127 1 6 886 399 345 45 17 chr4 39459061 39459238 -116170882 - MTE-int LTR MaLR -52 1528 1347 6 886 324 257 0 14 chr4 39459235 39459306 -116170814 - MTEb LTR MaLR -82 297 228 6 886 362 361 113 63 chr4 39459345 39459789 -116170331 - MTE-int LTR MaLR -743 837 372 6 886 726 332 46 28 chr4 39459830 39460115 -116170005 - MTE-int LTR MaLR -1285 295 6 6 886 1289 117 97 5 chr4 39460143 39460349 -116169771 + URR1B DNA MER1_type 1 225 0 6 886 327 49 0 0 chr4 39460372 39460413 -116169707 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 886 278 322 85 62 chr4 39460476 39460781 -116169339 + L2 LINE L2 2107 2418 -1001 6 886 539 223 0 7 chr4 39461230 39461536 -116168584 + (CA)n Simple_repeat Simple_repeat 1 303 0 6 886 555 396 57 9 chr4 39461994 39462330 -116167790 - LTR16C LTR ERVL -5 484 133 6 886 914 121 6 29 chr4 39465014 39465185 -116164935 + L1Md_F2 LINE L1 6416 6582 0 6 886 1605 271 56 41 chr4 39465197 39465452 -116164668 + Lx8 LINE L1 6258 6519 -954 6 886 233 22 42 42 chr4 39465452 39465500 -116164620 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 6 886 1605 271 56 41 chr4 39465500 39465802 -116164318 + Lx8 LINE L1 6520 6823 -650 6 886 1965 246 40 30 chr4 39465967 39466465 -116163655 + RMER19C LTR ERVK 109 611 0 6 886 254 242 57 66 chr4 39466913 39467019 -116163101 + Charlie11 DNA MER1_type 1339 1443 -753 6 886 244 381 31 58 chr4 39467391 39467614 -116162506 + LTR53 LTR ERVL 270 486 -33 6 886 252 235 0 0 chr4 39467757 39467825 -116162295 + (ATG)n Simple_repeat Simple_repeat 2 69 0 6 886 22 88 0 0 chr4 39468493 39468550 -116161570 + AT_rich Low_complexity Low_complexity 1 57 0 6 886 557 165 9 36 chr4 39469043 39469162 -116160958 - B1_Mus2 SINE Alu -1 148 42 6 886 503 165 0 0 chr4 39469189 39469268 -116160852 + (TCTCTG)n Simple_repeat Simple_repeat 5 83 0 6 886 328 172 0 33 chr4 39469268 39469328 -116160792 - PB1D9 SINE Alu -61 59 2 6 886 288 231 112 25 chr4 39469749 39469829 -116160291 + L2c LINE L2 3286 3372 -15 6 886 414 88 0 0 chr4 39470688 39470756 -116159364 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 886 216 149 0 0 chr4 39470760 39470807 -116159313 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 886 588 232 56 42 chr4 39471426 39471570 -116158550 + B1_Mm SINE Alu 2 147 0 6 886 644 74 0 21 chr4 39471637 39471733 -116158387 + (GGGGA)n Simple_repeat Simple_repeat 3 96 0 6 886 232 25 0 70 chr4 39471972 39472015 -116158105 + (TAA)n Simple_repeat Simple_repeat 3 42 0 6 886 303 411 73 37 chr4 39473453 39473781 -116156339 - LTR16A LTR ERVL -110 341 2 6 886 353 335 78 84 chr4 39475232 39475398 -116154722 - RSINE1 SINE B4 0 165 1 6 886 471 73 0 0 chr4 39475449 39475517 -116154603 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 886 540 252 0 0 chr4 39475518 39475625 -116154495 - B3 SINE B2 -108 108 2 6 886 473 265 25 56 chr4 39476443 39476603 -116153517 - RLTR11B LTR ERVK -15 438 284 6 886 642 274 59 51 chr4 39476665 39476938 -116153182 - RLTR11B LTR ERVK -178 275 1 6 886 612 221 24 41 chr4 39477006 39477176 -116152944 + Lx6 LINE L1 7293 7459 -1 6 886 362 311 19 0 chr4 39478386 39478492 -116151628 + L2a LINE L2 3301 3408 -18 6 886 228 355 140 12 chr4 39478930 39479101 -116151019 + MIRb SINE MIR 15 207 -61 6 886 5471 210 66 62 chr4 39480602 39480662 -116149458 - Lx5 LINE L1 -81 6969 6915 6 886 180 0 0 0 chr4 39480662 39480682 -116149438 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 886 5471 197 50 38 chr4 39480682 39482585 -116147535 - Lx5 LINE L1 -136 6914 4992 6 886 970 181 19 0 chr4 39482579 39482795 -116147325 - Lx5 LINE L1 -5749 1337 1118 6 886 5950 1 0 0 chr4 39482796 39483454 -116146666 - L1Md_A LINE L1 0 6582 5925 6 886 1183 75 6 6 chr4 39483456 39483629 -116146491 + (TCTCC)n Simple_repeat Simple_repeat 2 174 0 6 886 608 271 36 10 chr4 39483647 39483841 -116146279 + RMER17C LTR ERVK 180 378 -32 6 886 1063 289 62 21 chr4 39483846 39484231 -116145889 - Lx8 LINE L1 -490 6983 6583 6 886 451 289 42 0 chr4 39484341 39484483 -116145637 - B1F SINE Alu -1 148 1 6 886 630 328 80 102 chr4 39484524 39485051 -116145069 + MLT2B1 LTR ERVL 6 520 0 6 886 230 359 44 13 chr4 39485863 39486021 -116144099 - L1_Mur3 LINE L1 -2285 5597 5435 6 886 402 21 0 0 chr4 39486087 39486134 -116143986 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 886 663 284 72 33 chr4 39487764 39488225 -116141895 - L1_Rod LINE L1 -535 5345 4854 6 886 403 312 75 8 chr4 39488223 39488274 -116141846 - L1_Mur3 LINE L1 -1151 4995 4936 6 886 2337 131 0 20 chr4 39488274 39488665 -116141455 - Lx LINE L1 -6 6648 6266 6 886 421 317 53 0 chr4 39488665 39488858 -116141262 - L1_Mur3 LINE L1 -1208 4935 4701 6 886 1200 242 99 23 chr4 39488950 39489293 -116140827 - ORR1D1 LTR MaLR -2 372 4 6 886 180 111 0 0 chr4 39489364 39489391 -116140729 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 886 561 307 79 21 chr4 39489458 39489787 -116140333 - L1_Mur3 LINE L1 -1296 4584 4237 6 886 1092 326 26 16 chr4 39489778 39490379 -116139741 + Lx8 LINE L1 5358 5972 -1672 6 886 318 80 0 0 chr4 39490590 39490640 -116139480 + (A)n Simple_repeat Simple_repeat 1 50 0 6 886 3761 280 26 34 chr4 39490837 39491974 -116138146 + Lx8 LINE L1 6197 7324 -149 6 886 366 289 96 9 chr4 39492835 39492950 -116137170 + ID_B1 SINE B4 94 218 -6 6 886 850 103 7 7 chr4 39493226 39493363 -116136757 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 6 886 455 119 0 15 chr4 39493365 39493433 -116136687 - B1_Mur4 SINE Alu -6 144 78 6 886 25 31 0 0 chr4 39493502 39493534 -116136586 + AT_rich Low_complexity Low_complexity 1 32 0 6 886 597 267 142 52 chr4 39494098 39494632 -116135488 - L1M4 LINE L1 -1248 4898 4317 6 886 469 158 0 28 chr4 39495052 39495154 -116134966 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 6 886 867 124 0 0 chr4 39495154 39495331 -116134789 + (TC)n Simple_repeat Simple_repeat 2 178 0 6 886 469 158 0 28 chr4 39495331 39495356 -116134764 + (TCTCTG)n Simple_repeat Simple_repeat 3 26 0 6 886 1098 85 0 0 chr4 39495356 39495533 -116134587 + (TC)n Simple_repeat Simple_repeat 2 178 0 6 886 469 158 0 28 chr4 39495533 39495547 -116134573 + (TCTCTG)n Simple_repeat Simple_repeat 1 14 0 6 886 225 375 0 59 chr4 39495548 39495650 -116134470 - B4A SINE B4 -86 206 111 6 886 27 0 0 0 chr4 39495863 39495890 -116134230 + AT_rich Low_complexity Low_complexity 1 27 0 6 886 7583 120 20 8 chr4 39495928 39497184 -116132936 - MusHAL1 LINE L1 -605 2107 837 6 886 7785 89 7 3 chr4 39497181 39498264 -116131856 - L1_Mus3 LINE L1 0 6638 5581 6 886 11187 110 14 5 chr4 39498258 39500000 -116130120 - MusHAL1 LINE L1 -822 1890 133 6 886 5658 99 24 21 chr4 39500000 39500905 -116129215 - L1VL2 LINE L1 -5300 1035 128 1 886 389 290 62 48 chr4 39500937 39501168 -116128952 - L1M4 LINE L1 -1857 4289 4064 2 886 2751 58 0 39 chr4 39501168 39501528 -116128592 + ORR1A1 LTR MaLR 1 346 0 3 886 389 290 62 48 chr4 39501528 39501586 -116128534 - L1M4 LINE L1 -2083 4063 3996 2 886 348 294 93 0 chr4 39502143 39502357 -116127763 - L1M4 LINE L1 -2229 3917 3684 2 886 22 35 0 0 chr4 39502453 39502482 -116127638 + AT_rich Low_complexity Low_complexity 1 29 0 4 886 3523 221 107 16 chr4 39502791 39503672 -116126448 + RLTR25A LTR ERVK 1 1000 -28 5 886 253 158 0 0 chr4 39503827 39503865 -116126255 + RLTR25A LTR ERVK 1066 1103 0 5 886 1105 46 20 0 chr4 39505556 39505707 -116124413 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 6 886 505 222 149 33 chr4 39505740 39505861 -116124259 - B1F1 SINE Alu -14 135 1 7 886 190 378 134 29 chr4 39505920 39506195 -116123925 + L2b LINE L2 3024 3327 -48 8 886 203 291 127 0 chr4 39506281 39506360 -116123760 - MIRc SINE MIR -45 223 135 9 886 29 28 0 0 chr4 39506554 39506590 -116123530 + AT_rich Low_complexity Low_complexity 1 36 0 1 886 408 20 0 0 chr4 39506858 39506907 -116123213 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 886 318 26 0 0 chr4 39507337 39507376 -116122744 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 886 378 0 0 0 chr4 39507724 39507766 -116122354 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 886 487 325 22 74 chr4 39507913 39508286 -116121834 - RMER15 LTR ERVL -103 472 2 1 886 366 321 14 50 chr4 39508286 39508404 -116121716 + B4A SINE B4 159 273 -19 1 886 360 0 0 0 chr4 39508404 39508444 -116121676 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 886 366 321 14 50 chr4 39508444 39508464 -116121656 + B4A SINE B4 274 292 0 1 886 726 12 0 0 chr4 39508479 39508562 -116121558 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 1 886 2385 99 72 15 chr4 39509000 39509389 -116120731 + IAPLTR2a LTR ERVK 1 411 0 1 886 499 286 132 90 chr4 39510188 39510499 -116119621 + ORR1E LTR MaLR 1 324 -35 1 886 339 339 25 8 chr4 39510722 39510841 -116119279 + B1F1 SINE Alu 21 141 -8 2 886 22 70 0 0 chr4 39510842 39510885 -116119235 + AT_rich Low_complexity Low_complexity 1 43 0 2 886 310 286 47 23 chr4 39511468 39511604 -116118516 - MLT1C LTR MaLR -15 490 311 2 886 451 0 34 0 chr4 39511710 39511769 -116118351 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 886 4450 143 35 28 chr4 39511813 39511996 -116118124 - Lx4B LINE L1 -2 7056 6867 2 886 2316 92 3 58 chr4 39511996 39512342 -116117778 + ORR1A2 LTR MaLR 1 327 0 2 886 4450 143 35 28 chr4 39512342 39512949 -116117171 - Lx4B LINE L1 -192 6866 6260 2 886 245 263 26 13 chr4 39513015 39513092 -116117028 - MLT1C LTR MaLR -359 146 69 2 886 502 240 0 16 chr4 39513099 39513222 -116116898 + MTEb LTR MaLR 259 379 0 2 886 627 303 98 14 chr4 39514270 39514638 -116115482 + L1MA9 LINE L1 5842 6240 -72 2 886 280 283 108 76 chr4 39514713 39514870 -116115250 - MER76 LTR ERVL -54 637 476 2 886 290 325 92 88 chr4 39515047 39515320 -116114800 + B4 SINE B4 8 281 -11 2 886 450 0 0 0 chr4 39515322 39515372 -116114748 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 886 663 317 67 82 chr4 39516201 39516483 -116113637 - B4A SINE B4 0 292 15 3 886 1447 74 0 5 chr4 39516677 39516868 -116113252 - B2_Mm2 SINE B2 -5 190 1 3 886 3068 173 53 58 chr4 39516868 39517475 -116112645 - RMER19C LTR ERVK -7 604 1 3 886 569 326 65 126 chr4 39517858 39518230 -116111890 - ORR1E LTR MaLR -2 372 24 3 886 500 106 0 11 chr4 39519529 39519624 -116110496 + (TA)n Simple_repeat Simple_repeat 2 95 0 3 886 1214 213 55 34 chr4 39519778 39520025 -116110095 + ORR1D1 LTR MaLR 23 275 -99 3 886 2910 147 105 75 chr4 39520025 39520694 -116109426 - RMER6C LTR ERVK -1 689 1 3 886 1214 213 55 34 chr4 39520694 39520738 -116109382 + ORR1D1 LTR MaLR 276 320 -54 3 886 321 182 0 0 chr4 39521250 39521305 -116108815 + ORR1D1 LTR MaLR 320 374 0 3 886 3864 245 59 7 chr4 39521311 39522295 -116107825 + ORR1D1-int LTR MaLR 37 1071 -299 3 886 572 207 26 0 chr4 39522417 39522533 -116107587 - ORR1C2 LTR MaLR -3 381 263 3 886 1145 197 177 14 chr4 39522512 39522800 -116107320 + ORR1D1 LTR MaLR 44 378 0 3 886 2777 199 31 71 chr4 39522802 39523564 -116106556 + Lx9 LINE L1 6889 7620 -24 3 886 1958 181 218 17 chr4 39523585 39524125 -116105995 + Lx2B LINE L1 6337 6990 -10 4 886 378 0 0 0 chr4 39524600 39524642 -116105478 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 886 749 172 25 0 chr4 39525106 39525228 -116104892 + B1_Mus1 SINE Alu 3 127 -21 4 886 350 110 27 0 chr4 39526197 39526270 -116103850 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 4 886 396 119 158 0 chr4 39526271 39526372 -116103748 + Lx9 LINE L1 7527 7643 -1 4 886 717 121 0 31 chr4 39526719 39526847 -116103273 - L1Md_F2 LINE L1 0 6582 6459 4 886 198 193 0 0 chr4 39529065 39529122 -116100998 + T-rich Low_complexity Low_complexity 2 58 0 4 886 420 56 28 0 chr4 39529136 39529207 -116100913 - L1Md_F3 LINE L1 -1 6583 6511 4 886 22 0 0 0 chr4 39529488 39529510 -116100610 + AT_rich Low_complexity Low_complexity 1 22 0 4 886 234 130 18 18 chr4 39529759 39529814 -116100306 - Lx9 LINE L1 -1 7643 7589 4 886 240 170 0 0 chr4 39529877 39529930 -116100190 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 886 23 33 0 0 chr4 39530636 39530666 -116099454 + AT_rich Low_complexity Low_complexity 1 30 0 5 886 869 300 82 15 chr4 39530679 39530946 -116099174 + B4A SINE B4 8 292 0 5 886 768 157 0 0 chr4 39530946 39531112 -116099008 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 886 307 130 91 18 chr4 39531117 39531172 -116098948 + HAL1-3A_ME LINE L1 1976 2034 -824 5 886 1165 61 0 0 chr4 39531235 39531382 -116098738 + B1_Mm SINE Alu 1 147 0 5 886 204 40 0 0 chr4 39531385 39531410 -116098710 + (A)n Simple_repeat Simple_repeat 1 25 0 5 886 22 0 0 0 chr4 39531500 39531522 -116098598 + AT_rich Low_complexity Low_complexity 1 22 0 5 886 501 265 13 26 chr4 39531548 39531699 -116098421 - B1F2 SINE Alu 0 149 1 5 886 25 0 0 0 chr4 39531750 39531775 -116098345 + AT_rich Low_complexity Low_complexity 1 25 0 5 886 573 316 27 74 chr4 39532149 39532446 -116097674 + B4A SINE B4 10 292 0 6 886 275 271 104 0 chr4 39532486 39532582 -116097538 + L1M3 LINE L1 4881 4986 -1154 6 886 328 282 151 29 chr4 39532579 39532929 -116097191 - L1M2 LINE L1 -2850 3293 2901 6 886 656 296 105 0 chr4 39533036 39533398 -116096722 + L1M2 LINE L1 3279 3678 -2465 6 886 600 268 6 13 chr4 39533440 39533599 -116096521 + ORR1B1-int LTR MaLR 1421 1578 -2 6 886 238 204 93 0 chr4 39533601 39533655 -116096465 + ORR1B1 LTR MaLR 1 59 -320 6 886 2647 58 96 3 chr4 39533725 39534091 -116096029 - MTB LTR MaLR 0 400 1 6 886 432 286 36 91 chr4 39534431 39534634 -116095486 + B3A SINE B2 2 181 -14 6 886 35 0 0 0 chr4 39534965 39535000 -116095120 + AT_rich Low_complexity Low_complexity 1 35 0 6 886 1378 203 73 17 chr4 39535001 39535301 -116094819 + ORR1B1 LTR MaLR 39 355 -39 6 886 360 0 0 0 chr4 39535346 39535386 -116094734 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 886 216 67 0 0 chr4 39535762 39535792 -116094328 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 886 308 225 48 48 chr4 39535803 39535887 -116094233 + ID_B1 SINE B4 100 183 -41 7 886 226 342 41 49 chr4 39535887 39535926 -116094194 + B1_Mus1 SINE Alu 20 141 -7 7 886 209 57 29 0 chr4 39535986 39536021 -116094099 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 886 336 125 0 0 chr4 39536288 39536352 -116093768 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 886 1703 62 0 13 chr4 39536434 39536664 -116093456 - L1Md_F3 LINE L1 -14 6570 6344 7 886 3149 35 0 0 chr4 39536668 39537062 -116093058 + L1Md_F3 LINE L1 5944 6337 -247 7 886 727 294 65 32 chr4 39537093 39537339 -116092781 - B4 SINE B4 -31 261 8 7 886 879 158 48 53 chr4 39538413 39538600 -116091520 - B2_Mm2 SINE B2 -9 186 1 7 886 789 11 0 0 chr4 39538763 39538853 -116091267 + (GAA)n Simple_repeat Simple_repeat 2 91 0 7 886 284 366 34 19 chr4 39540125 39540298 -116089822 + MLT1H2 LTR MaLR 17 185 -304 7 886 674 186 6 17 chr4 39540685 39540708 -116089412 + polypyrimidine Low_complexity Low_complexity 152 174 0 7 886 1347 72 0 0 chr4 39540708 39540888 -116089232 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 8 886 674 186 6 17 chr4 39540888 39541039 -116089081 + CT-rich Low_complexity Low_complexity 3 151 0 8 886 583 273 15 8 chr4 39541059 39541192 -116088928 - B1F SINE Alu -11 138 5 8 886 234 0 0 0 chr4 39541214 39541240 -116088880 + (CAG)n Simple_repeat Simple_repeat 1 26 0 8 886 441 0 0 0 chr4 39541581 39541630 -116088490 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 886 323 245 59 0 chr4 39541644 39541746 -116088374 - L1MA4A LINE L1 -377 5926 5819 8 886 749 276 28 23 chr4 39542379 39542594 -116087526 - RMER15 LTR ERVL -14 561 346 8 886 29 28 0 0 chr4 39543167 39543203 -116086917 + AT_rich Low_complexity Low_complexity 1 36 0 8 886 206 62 0 30 chr4 39543236 39543269 -116086851 + (GGGAGA)n Simple_repeat Simple_repeat 1 32 0 8 886 499 266 18 0 chr4 39543269 39543374 -116086746 - RSINE1 SINE B4 -37 128 22 8 886 1340 195 71 4 chr4 39543374 39543661 -116086459 + ORR1A2 LTR MaLR 1 378 0 9 886 195 42 0 0 chr4 39543799 39543823 -116086297 + (A)n Simple_repeat Simple_repeat 1 24 0 9 886 437 226 252 0 chr4 39544731 39544846 -116085274 + B1F SINE Alu 4 147 -2 9 886 1002 137 43 21 chr4 39545510 39545696 -116084424 - B2_Mm2 SINE B2 -5 190 1 9 886 186 43 0 0 chr4 39545697 39545720 -116084400 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 9 886 464 80 34 11 chr4 39547773 39547861 -116082259 + (TC)n Simple_repeat Simple_repeat 1 90 0 9 886 6685 50 7 7 chr4 39548988 39549273 -116080847 - L1_Mus1 LINE L1 0 6567 6282 9 886 3371 40 2 0 chr4 39549273 39549668 -116080452 - MTA_Mm LTR MaLR 0 396 1 9 886 6685 50 7 7 chr4 39549668 39550211 -116079909 - L1_Mus1 LINE L1 -286 6281 5739 9 886 29 0 0 0 chr4 39550336 39550365 -116079755 + AT_rich Low_complexity Low_complexity 1 29 0 9 886 229 292 52 26 chr4 39550493 39550609 -116079511 + L1ME1 LINE L1 6013 6131 -48 9 886 21 0 0 0 chr4 39550846 39550867 -116079253 + AT_rich Low_complexity Low_complexity 1 21 0 1 886 240 143 0 0 chr4 39550995 39551037 -116079083 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 886 446 299 141 22 chr4 39551084 39551138 -116078982 - Lx9 LINE L1 -214 7430 7379 1 886 3615 51 87 6 chr4 39551138 39551612 -116078508 - RLTR1B LTR ERV1 0 512 1 1 886 446 299 141 22 chr4 39551612 39551827 -116078293 - Lx9 LINE L1 -266 7378 7129 1 886 334 188 6 46 chr4 39551874 39552047 -116078073 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 886 312 27 0 0 chr4 39552068 39552105 -116078015 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 886 866 285 61 20 chr4 39552821 39553229 -116076891 + L1MA6 LINE L1 5275 5699 -592 1 886 440 198 117 8 chr4 39553241 39553377 -116076743 - L1MA4 LINE L1 -251 5920 5772 1 886 279 0 0 0 chr4 39553485 39553516 -116076604 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 886 1786 132 11 95 chr4 39553563 39553922 -116076198 - ORR1A4 LTR MaLR 0 329 1 1 886 793 298 75 21 chr4 39553937 39554202 -116075918 + L1MA6 LINE L1 5768 6050 -250 1 886 543 69 0 0 chr4 39554202 39554274 -116075846 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 886 793 298 75 21 chr4 39554274 39554488 -116075632 + L1MA6 LINE L1 6051 6273 -27 1 886 193 330 198 0 chr4 39556164 39556270 -116073850 - MIR SINE MIR -113 149 23 1 886 249 322 24 115 chr4 39557896 39558061 -116072059 - RMER15 LTR ERVL -42 533 384 1 886 813 252 270 42 chr4 39558337 39558607 -116071513 - RMER20B LTR ERVK -145 482 124 1 886 3941 93 0 0 chr4 39558607 39559135 -116070985 + L1_Mus2 LINE L1 6039 6566 0 1 886 813 252 270 42 chr4 39559135 39559249 -116070871 - RMER20B LTR ERVK -504 123 10 1 886 356 0 23 0 chr4 39561133 39561177 -116068943 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1 886 1213 251 73 81 chr4 39562477 39563010 -116067110 - Lx8 LINE L1 -1 7472 6944 1 886 310 244 123 66 chr4 39563057 39563114 -116067006 + Lx9 LINE L1 5318 5368 -512 1 886 3772 61 2 4 chr4 39563114 39563590 -116066530 + MT2C_Mm LTR ERVL 1 475 0 1 886 407 236 79 58 chr4 39563590 39563796 -116066324 + Lx9 LINE L1 5369 5628 -672 1 886 1233 251 55 33 chr4 39563804 39564302 -116065818 + RMER19C LTR ERVK 332 902 0 1 886 411 264 130 51 chr4 39564303 39564562 -116065558 + Lx9 LINE L1 5642 5927 -1717 1 886 238 325 0 12 chr4 39565305 39565389 -116064731 + PB1D10 SINE Alu 1 83 -34 1 886 365 16 31 31 chr4 39565397 39565461 -116064659 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 886 314 290 179 14 chr4 39567510 39567650 -116062470 + RSINE1 SINE B4 3 165 0 1 886 24 32 0 0 chr4 39567925 39567956 -116062164 + AT_rich Low_complexity Low_complexity 1 31 0 1 886 240 35 0 0 chr4 39568761 39568790 -116061330 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 886 357 82 0 0 chr4 39568800 39568849 -116061271 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 886 275 258 35 0 chr4 39569238 39569310 -116060810 + B2_Mm2 SINE B2 1 81 -117 1 886 803 274 45 23 chr4 39569326 39569546 -116060574 + MTE2a LTR MaLR 1 225 -154 1 886 568 313 89 96 chr4 39569551 39569844 -116060276 + B4A SINE B4 2 292 0 1 886 312 102 0 0 chr4 39569886 39569935 -116060185 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 886 22 35 0 0 chr4 39570134 39570163 -116059957 + AT_rich Low_complexity Low_complexity 1 29 0 1 886 232 274 68 0 chr4 39570615 39570688 -116059432 + ID4_ SINE ID 2 79 -4 1 886 683 155 15 23 chr4 39570818 39570950 -116059170 - URR1B DNA MER1_type -1 224 94 1 886 281 233 245 85 chr4 39571044 39571138 -116058982 - URR1B DNA MER1_type -117 108 1 1 886 243 333 49 7 chr4 39571238 39571380 -116058740 + L1M3e LINE L1 563 710 -6320 1 886 265 380 18 0 chr4 39571911 39572082 -116058038 + L1M3e LINE L1 1590 1763 -5267 1 886 236 258 64 11 chr4 39572118 39572212 -116057908 + L1MA8 LINE L1 6188 6286 -5 1 886 619 274 6 99 chr4 39572219 39572401 -116057719 + RSINE1 SINE B4 1 165 0 1 886 589 257 7 26 chr4 39572651 39572803 -116057317 + B1_Mur1 SINE Alu 1 149 0 1 886 853 357 54 19 chr4 39575036 39575570 -116054550 - Lx8 LINE L1 -181 7292 6740 1 886 3066 42 0 13 chr4 39575647 39576033 -116054087 - L1Md_F3 LINE L1 0 6584 6204 1 886 914 292 8 4 chr4 39576237 39576502 -116053618 - Lx8 LINE L1 -832 6641 6376 1 886 307 209 0 15 chr4 39576502 39576570 -116053550 - MTD LTR MaLR -348 71 5 1 886 472 250 106 40 chr4 39576572 39576783 -116053337 + Lx9 LINE L1 7274 7488 -156 1 886 219 114 0 0 chr4 39576783 39576818 -116053302 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 886 472 250 106 40 chr4 39576818 39576935 -116053185 + Lx9 LINE L1 7489 7623 -21 1 886 227 316 177 23 chr4 39577361 39577846 -116052274 - L1ME3B LINE L1 -225 6015 5456 1 886 300 294 155 26 chr4 39577940 39578244 -116051876 - L1ME3B LINE L1 -832 5314 4972 1 886 295 304 118 48 chr4 39578617 39578845 -116051275 + L4 LINE RTE 184 427 -1602 1 886 309 349 113 27 chr4 39579213 39579513 -116050607 + L1MD LINE L1 3562 3887 -2259 1 886 2184 165 34 5 chr4 39579789 39580227 -116049893 - Lx4B LINE L1 -37 7021 6571 1 886 28 29 0 0 chr4 39581243 39581278 -116048842 + AT_rich Low_complexity Low_complexity 1 35 0 1 886 299 343 76 12 chr4 39581594 39581765 -116048355 - Kanga11a DNA Tc2 -551 419 238 1 886 2823 117 39 15 chr4 39582066 39582534 -116047586 - Lx LINE L1 -13 6641 6163 1 886 245 51 26 0 chr4 39582536 39582575 -116047545 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 886 498 309 70 98 chr4 39583029 39583648 -116046472 - L1M2 LINE L1 -894 5249 4656 1 886 225 0 0 0 chr4 39583648 39583673 -116046447 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 110 498 309 70 98 chr4 39583673 39583796 -116046324 - L1M2 LINE L1 -1488 4655 4529 1 887 231 36 0 0 chr4 39584020 39584048 -116046072 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1 887 192 254 0 0 chr4 39584280 39584339 -116045781 + GA-rich Low_complexity Low_complexity 5 63 0 1 887 786 11 0 0 chr4 39584495 39584586 -116045534 + (TTTC)n Simple_repeat Simple_repeat 4 94 0 1 887 405 306 8 31 chr4 39584955 39585083 -116045037 - MTD LTR MaLR -9 410 286 1 887 420 312 50 82 chr4 39585168 39585447 -116044673 - B4A SINE B4 -18 274 5 1 887 810 120 0 0 chr4 39585767 39585892 -116044228 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 887 681 216 193 0 chr4 39587396 39587577 -116042543 + B3 SINE B2 1 216 0 1 887 351 0 0 0 chr4 39587836 39587875 -116042245 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 887 1985 209 23 45 chr4 39588159 39588686 -116041434 - Lx9 LINE L1 0 7644 7130 1 887 626 257 118 55 chr4 39588713 39589213 -116040907 + Lx9 LINE L1 5846 6483 -1161 1 887 2020 180 3 8 chr4 39589217 39589598 -116040522 + Lx9 LINE L1 6739 7117 -527 1 887 668 303 14 32 chr4 39589866 39590237 -116039883 - Lx8 LINE L1 -1544 5929 5532 1 887 294 29 0 0 chr4 39591488 39591523 -116038597 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 887 1211 220 138 31 chr4 39592875 39593259 -116036861 - Lx9 LINE L1 -6 7638 7214 1 887 498 275 19 6 chr4 39593831 39594018 -116036102 + L1M1 LINE L1 5463 5652 -651 1 887 4413 14 2 0 chr4 39594504 39594996 -116035124 - MT2_Mm LTR ERVL 0 493 1 1 887 302 0 0 0 chr4 39594996 39595034 -116035086 - MERVL-int LTR ERVL 0 5485 5448 1 887 390 167 46 35 chr4 39595034 39595121 -116034999 - ORR1A3-int LTR MaLR -1323 640 553 1 887 38746 16 14 0 chr4 39595121 39600408 -116029712 - MERVL-int LTR ERVL -125 5360 1 1 887 4413 14 2 0 chr4 39600408 39600900 -116029220 - MT2_Mm LTR ERVL 0 493 1 1 887 447 113 0 0 chr4 39601050 39601121 -116028999 + (TTGG)n Simple_repeat Simple_repeat 1 71 0 1 887 21 0 0 0 chr4 39601753 39601774 -116028346 + AT_rich Low_complexity Low_complexity 1 21 0 1 887 359 276 176 7 chr4 39602215 39602368 -116027752 + B3A SINE B2 2 180 -18 1 887 297 0 0 0 chr4 39602444 39602477 -116027643 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 887 279 0 0 0 chr4 39602677 39602708 -116027412 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 887 293 370 87 60 chr4 39602779 39603363 -116026757 - L1MEg LINE L1 -5311 773 174 1 887 720 276 5 58 chr4 39604277 39604485 -116025635 + B3A SINE B2 2 198 0 1 887 1744 129 151 27 chr4 39605336 39605513 -116024607 + RMER17C LTR ERVK 1 184 -226 1 887 1031 44 0 46 chr4 39605513 39605731 -116024389 + (TC)n Simple_repeat Simple_repeat 1 208 0 1 887 1744 129 151 27 chr4 39605731 39605917 -116024203 + RMER17C LTR ERVK 185 409 -1 1 887 423 0 0 0 chr4 39607232 39607279 -116022841 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 887 252 382 65 0 chr4 39607382 39607568 -116022552 - MIRb SINE MIR -36 232 35 1 887 23 78 0 0 chr4 39609491 39609542 -116020578 + AT_rich Low_complexity Low_complexity 1 51 0 1 887 321 135 0 19 chr4 39610081 39610134 -116019986 + HAL1-3A_ME LINE L1 1961 2012 -846 1 887 222 279 0 0 chr4 39610136 39610222 -116019898 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 887 497 256 51 6 chr4 39610931 39611088 -116019032 + Lx5 LINE L1 6884 7047 -3 1 887 28 99 0 0 chr4 39611088 39611179 -116018941 + AT_rich Low_complexity Low_complexity 1 91 0 1 887 29719 98 18 10 chr4 39612393 39616146 -116013974 + L1_Mus1 LINE L1 231 4184 -1699 1 887 3998 64 60 8 chr4 39616146 39616678 -116013442 + LTRIS2 LTR ERV1 5 564 0 1 887 29719 85 14 5 chr4 39616678 39619057 -116011063 + L1_Mus1 LINE L1 4185 6567 0 1 887 255 31 0 0 chr4 39620318 39620350 -116009770 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 887 28 0 0 0 chr4 39620556 39620584 -116009536 + AT_rich Low_complexity Low_complexity 1 28 0 1 887 537 199 0 0 chr4 39620691 39620832 -116009288 + CT-rich Low_complexity Low_complexity 2 142 0 1 887 518 311 91 115 chr4 39620837 39621201 -116008919 + ORR1E LTR MaLR 1 355 -4 1 887 540 290 7 7 chr4 39621370 39621516 -116008604 - RSINE1 SINE B4 -17 148 3 1 887 248 302 103 44 chr4 39623053 39623248 -116006872 - MLT1E1A LTR MaLR -360 293 89 1 887 751 239 25 15 chr4 39623471 39623671 -116006449 + Lx6 LINE L1 7179 7380 -80 1 887 2555 181 11 13 chr4 39624312 39624776 -116005344 + RMER4A LTR ERVK 1 463 -3 1 887 1022 133 6 0 chr4 39624815 39624988 -116005132 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1 887 207 170 0 0 chr4 39625625 39625672 -116004448 + T-rich Low_complexity Low_complexity 1 47 0 1 887 235 287 11 0 chr4 39625806 39625900 -116004220 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 887 512 295 67 24 chr4 39626119 39626615 -116003505 - L1MEf LINE L1 -2697 3449 2933 1 887 1338 56 34 0 chr4 39626616 39626795 -116003325 + L1Md_F2 LINE L1 5402 5586 -297 1 887 7184 73 31 11 chr4 39626796 39627795 -116002325 + L1Md_F2 LINE L1 5588 6582 0 1 887 962 221 24 5 chr4 39627811 39628020 -116002100 + B3 SINE B2 4 216 0 1 887 210 191 41 41 chr4 39628023 39628072 -116002048 + PB1D9 SINE Alu 71 119 -1 1 887 748 302 71 41 chr4 39628100 39628487 -116001633 - L1MEf LINE L1 -3232 2914 2499 1 887 2144 169 42 3 chr4 39628487 39628866 -116001254 - ORR1B1 LTR MaLR 0 394 1 2 887 748 302 71 41 chr4 39628866 39629237 -116000883 - L1MEf LINE L1 -3648 2498 2133 1 887 430 314 58 100 chr4 39629248 39629609 -116000511 - L1MEf LINE L1 -4122 2120 1775 1 887 2287 146 50 144 chr4 39629689 39630273 -115999847 + RLTR24 LTR ERV1 1 529 0 2 887 580 306 48 11 chr4 39630273 39630650 -115999470 + L1MA6 LINE L1 5853 6243 -57 2 887 538 357 55 57 chr4 39630683 39631196 -115998924 + L1MEf LINE L1 1222 1733 -4467 2 887 579 207 139 12 chr4 39631198 39631364 -115998756 + B3A SINE B2 2 188 -10 2 887 213 240 0 0 chr4 39631369 39631419 -115998701 + A-rich Low_complexity Low_complexity 1 50 0 2 887 28 48 0 0 chr4 39631446 39631488 -115998632 + AT_rich Low_complexity Low_complexity 1 42 0 2 887 640 275 67 16 chr4 39631494 39631808 -115998312 - L1MA9 LINE L1 -20 6292 5963 2 887 258 265 14 14 chr4 39632096 39632165 -115997955 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 887 532 114 0 0 chr4 39632239 39632318 -115997802 - L1_Mus4 LINE L1 -469 6167 6089 2 887 3354 76 21 19 chr4 39632318 39632799 -115997321 + L1_Mus4 LINE L1 6155 6636 0 2 887 599 277 66 5 chr4 39632956 39633191 -115996929 - L1MA9 LINE L1 -774 5529 5279 2 887 360 0 0 0 chr4 39633191 39633231 -115996889 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 887 392 300 149 19 chr4 39633231 39633421 -115996699 - L1MA9 LINE L1 -865 5278 5052 2 887 255 234 25 25 chr4 39633606 39633685 -115996435 - Charlie24 DNA MER1_type -1181 1269 1191 2 887 323 230 23 0 chr4 39634320 39634407 -115995713 + L1M4 LINE L1 4901 4989 -1157 2 887 232 247 65 0 chr4 39635027 39635104 -115995016 + L1M4 LINE L1 4981 5062 -1084 2 887 360 250 145 77 chr4 39635154 39635388 -115994732 - RMER10A LTR ERVL -13 429 180 2 887 322 359 47 28 chr4 39636735 39636947 -115993173 - HAL1 LINE L1 -2289 218 3 2 887 3072 71 5 0 chr4 39638165 39638559 -115991561 - MTA_Mm LTR MaLR 0 396 1 2 887 274 306 14 14 chr4 39639474 39639547 -115990573 + RSINE1 SINE B4 93 165 0 2 887 349 241 12 35 chr4 39639575 39639747 -115990373 + (CATA)n Simple_repeat Simple_repeat 3 170 0 2 887 788 150 6 0 chr4 39640417 39640577 -115989543 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 887 409 335 94 13 chr4 39641840 39642013 -115988107 + Arthur1C DNA Tip100 112 285 -78 2 887 307 291 0 0 chr4 39642013 39642092 -115988028 - ID4 SINE ID 0 83 5 2 887 409 335 94 13 chr4 39642092 39642151 -115987969 + Arthur1C DNA Tip100 286 362 -1 2 887 578 226 100 21 chr4 39643369 39643509 -115986611 + B3A SINE B2 2 152 -46 2 887 288 70 0 0 chr4 39643510 39643553 -115986567 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 887 255 196 18 0 chr4 39643776 39643832 -115986288 - RMER15 LTR ERVL -458 117 61 2 887 199 357 94 16 chr4 39645279 39645407 -115984713 + MIR SINE MIR 16 153 -55 2 887 313 243 139 9 chr4 39645507 39645615 -115984505 + MER5A1 DNA MER1_type 42 163 -3 2 887 1544 152 188 6 chr4 39646705 39647024 -115983096 + ORR1C1 LTR MaLR 2 378 0 2 887 375 418 85 80 chr4 39647291 39647681 -115982439 + MER115 DNA Tip100 61 452 -241 2 887 259 336 28 50 chr4 39648459 39648600 -115981520 + LTR33C LTR ERVL 91 228 -401 2 887 5053 93 17 14 chr4 39648784 39649505 -115980615 + Lx3A LINE L1 6252 6974 -7 2 887 22 0 0 0 chr4 39650165 39650187 -115979933 + AT_rich Low_complexity Low_complexity 1 22 0 2 887 369 0 0 0 chr4 39651279 39651320 -115978800 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 887 479 82 14 0 chr4 39651406 39651479 -115978641 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 887 336 259 92 40 chr4 39651505 39651678 -115978442 + L1MA7 LINE L1 6106 6287 -4 2 887 216 309 62 0 chr4 39652492 39652589 -115977531 - MIRb SINE MIR -44 224 122 2 887 759 171 55 13 chr4 39652589 39652745 -115977375 + ORR1D1 LTR MaLR 1 171 -213 2 887 681 13 0 0 chr4 39652745 39652823 -115977297 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 887 734 221 96 10 chr4 39652823 39652863 -115977257 + ORR1D1 LTR MaLR 172 213 -171 2 887 825 171 26 82 chr4 39652844 39653087 -115977033 + MT2A LTR ERVL 349 601 0 2 887 628 143 16 0 chr4 39653736 39653862 -115976258 + CT-rich Low_complexity Low_complexity 1 128 0 2 887 198 71 0 0 chr4 39655400 39655428 -115974692 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2 887 2759 64 22 0 chr4 39655472 39655829 -115974291 - L1_Mus2 LINE L1 -1 6565 6201 2 887 214 354 0 0 chr4 39655977 39656056 -115974064 + CT-rich Low_complexity Low_complexity 2 80 0 2 887 651 203 8 0 chr4 39656068 39656191 -115973929 - B1_Mus2 SINE Alu 0 147 24 2 887 264 256 0 165 chr4 39656101 39656204 -115973916 - MT2B LTR ERVL -336 265 180 2 887 392 305 7 14 chr4 39656451 39656594 -115973526 + Lx9 LINE L1 7272 7413 -231 2 887 243 0 0 0 chr4 39656630 39656657 -115973463 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 2 887 230 235 66 38 chr4 39656677 39656783 -115973337 - Lx8 LINE L1 -1 7472 7364 2 887 1239 50 6 0 chr4 39656826 39656987 -115973133 + L1_Mus1 LINE L1 6268 6429 -138 2 887 28 38 0 19 chr4 39656989 39657023 -115973097 + AT_rich Low_complexity Low_complexity 1 34 0 2 887 2341 125 0 0 chr4 39657023 39657350 -115972770 - ORR1A2 LTR MaLR 0 327 1 2 887 28 38 0 19 chr4 39657350 39657368 -115972752 + AT_rich Low_complexity Low_complexity 1 18 0 2 887 731 309 60 35 chr4 39657400 39657799 -115972321 - Lx8 LINE L1 -64 7409 7001 2 887 447 250 87 7 chr4 39657824 39657973 -115972147 - MuLV-int LTR ERV1 -2354 5252 5092 2 887 422 278 29 0 chr4 39657981 39658154 -115971966 - MuLV-int LTR ERV1 -2658 5120 4830 2 887 250 282 115 106 chr4 39658599 39658825 -115971295 + RMER2 LTR ERV1 314 541 -26 2 887 1848 264 51 3 chr4 39658848 39659205 -115970915 - L1_Mur3 LINE L1 -59 5821 5441 2 887 405 0 0 0 chr4 39659205 39659250 -115970870 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 887 1848 264 51 3 chr4 39659250 39659484 -115970636 - L1_Mur3 LINE L1 -440 5440 5202 2 887 410 307 52 59 chr4 39659506 39659776 -115970344 - L1_Mur3 LINE L1 -796 5084 4817 2 887 6307 118 36 1 chr4 39659808 39661202 -115968918 + Lx LINE L1 5197 6639 -15 2 887 277 258 0 0 chr4 39661237 39661303 -115968817 - L1_Mur3 LINE L1 -1055 4825 4760 2 887 476 238 25 0 chr4 39661303 39661425 -115968695 - L1_Mur3 LINE L1 -1086 4794 4670 2 887 2050 67 0 4 chr4 39661538 39661806 -115968314 + L1Md_F2 LINE L1 6304 6570 -12 2 887 244 247 0 0 chr4 39661807 39661880 -115968240 + L1_Mur1 LINE L1 3471 3543 -2343 2 887 1218 279 19 54 chr4 39662616 39663131 -115966989 + Lx9 LINE L1 6973 7469 -175 2 887 703 218 7 40 chr4 39663193 39663341 -115966779 + B1_Mur3 SINE Alu 6 148 -1 2 887 1070 280 52 31 chr4 39663438 39663957 -115966163 + L1MB8 LINE L1 5647 6176 -2 2 887 309 337 0 0 chr4 39664385 39664468 -115965652 - MTE2b LTR MaLR -7 372 290 2 887 204 345 99 46 chr4 39665114 39665266 -115964854 - MIR SINE MIR -102 160 1 2 887 2884 79 12 12 chr4 39665584 39666005 -115964115 - BGLII LTR ERVK 0 421 1 2 887 618 285 32 21 chr4 39666392 39666582 -115963538 + MLT2D LTR ERVL 3 194 -220 2 887 284 234 135 55 chr4 39666619 39666782 -115963338 - B2_Mm2 SINE B2 -9 186 11 2 887 439 314 72 7 chr4 39666654 39666792 -115963328 - RSINE1 SINE B4 -16 149 3 2 887 396 339 31 20 chr4 39666793 39666989 -115963131 + MLT2D LTR ERVL 216 413 -51 2 887 952 261 118 14 chr4 39667067 39667355 -115962765 - MTE2b LTR MaLR -52 327 10 2 887 471 35 0 0 chr4 39667474 39667531 -115962589 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2 887 1844 101 30 0 chr4 39669277 39669545 -115960575 - ORR1A4 LTR MaLR -53 276 1 2 887 326 260 95 7 chr4 39669546 39669693 -115960427 - L1M3 LINE L1 -1383 4757 4598 2 887 274 246 15 0 chr4 39669694 39669759 -115960361 + ID4 SINE ID 3 68 -15 2 887 446 328 133 0 chr4 39669878 39670073 -115960047 + MLT1A1 LTR MaLR 49 269 -139 2 887 1167 68 0 7 chr4 39670073 39670221 -115959899 + B1_Mus1 SINE Alu 2 148 0 2 887 384 22 0 0 chr4 39670226 39670271 -115959849 + (GAA)n Simple_repeat Simple_repeat 2 46 0 2 887 995 114 6 17 chr4 39670271 39670449 -115959671 + (GAAAA)n Simple_repeat Simple_repeat 4 179 0 2 887 243 345 53 17 chr4 39670537 39670750 -115959370 - MIRc SINE MIR -43 219 2 2 887 410 239 124 12 chr4 39670833 39671002 -115959118 - Lx9 LINE L1 -1681 5963 5776 2 887 3072 187 60 3 chr4 39671078 39671657 -115958463 + ORR1D1-int LTR MaLR 736 1347 -23 2 887 666 183 110 14 chr4 39671663 39671817 -115958303 + ORR1D1 LTR MaLR 2 161 -206 2 887 266 282 126 17 chr4 39671903 39672022 -115958098 + Lx8 LINE L1 7197 7328 -145 2 887 214 244 0 0 chr4 39672095 39672140 -115957980 + GA-rich Low_complexity Low_complexity 5 49 0 2 887 1034 89 0 27 chr4 39672200 39672212 -115957908 - B1_Mus1 SINE Alu -1 147 139 2 887 459 15 14 29 chr4 39672212 39672282 -115957838 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2 887 1034 89 0 27 chr4 39672282 39672419 -115957701 - B1_Mus1 SINE Alu -10 138 2 2 887 418 221 47 0 chr4 39673450 39673536 -115956584 - PB1D9 SINE Alu -2 118 29 2 887 1190 117 5 5 chr4 39673536 39673733 -115956387 + L1_Mus1 LINE L1 5109 5305 -578 2 887 7468 67 0 0 chr4 39674553 39675825 -115954295 + L1_Mus1 LINE L1 5288 6559 -8 2 887 645 295 38 24 chr4 39676084 39676296 -115953824 - B3 SINE B2 0 216 2 2 887 267 172 62 15 chr4 39676875 39676940 -115953180 - MER67D LTR ERV1 -445 69 2 2 887 303 28 0 0 chr4 39678346 39678382 -115951738 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 887 403 314 48 11 chr4 39678551 39678738 -115951382 - Lx9 LINE L1 -272 7372 7179 2 887 1222 48 0 0 chr4 39679014 39679160 -115950960 + B1_Mus2 SINE Alu 2 147 0 2 887 231 36 0 0 chr4 39679160 39679188 -115950932 + (A)n Simple_repeat Simple_repeat 1 28 0 2 887 463 224 131 48 chr4 39679475 39679681 -115950439 + Lx7 LINE L1 7474 7696 0 2 887 1182 119 38 0 chr4 39679717 39679902 -115950218 + B2_Mm2 SINE B2 1 192 -3 2 887 625 189 61 0 chr4 39680965 39681097 -115949023 + B1_Mur3 SINE Alu 1 140 -9 2 887 275 333 0 85 chr4 39681881 39681999 -115948121 - MTEa LTR MaLR -271 108 1 2 887 291 301 66 33 chr4 39681999 39682067 -115948053 - MLT2B5 LTR ERVL -455 146 74 2 887 436 230 24 8 chr4 39682248 39682375 -115947745 + L1MB3 LINE L1 5685 5813 -358 2 887 332 303 113 8 chr4 39682390 39682523 -115947597 + B1F1 SINE Alu 3 149 0 2 887 949 103 26 0 chr4 39682543 39682698 -115947422 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 2 887 872 240 35 78 chr4 39682714 39683085 -115947035 + L1MB3 LINE L1 5821 6175 -8 2 887 21 57 0 0 chr4 39683218 39683253 -115946867 + AT_rich Low_complexity Low_complexity 1 35 0 2 887 235 257 14 0 chr4 39684100 39684170 -115945950 + Helitron1Nb_Mam RC Helitron 966 1036 -80 3 887 390 303 73 45 chr4 39684465 39684779 -115945341 - L1MD LINE L1 -2452 3694 3372 3 887 222 118 0 0 chr4 39684927 39684961 -115945159 + (T)n Simple_repeat Simple_repeat 1 34 0 3 887 202 159 68 0 chr4 39685001 39685045 -115945075 + T-rich Low_complexity Low_complexity 1 47 0 3 887 6270 48 1 6 chr4 39685054 39685836 -115944284 - L1Md_F2 LINE L1 -14 6568 5791 3 887 2892 36 0 11 chr4 39685836 39686198 -115943922 + L1Md_F2 LINE L1 5456 5813 -70 3 887 251 311 112 10 chr4 39686287 39686313 -115943807 - L1MD LINE L1 -3030 3116 3084 3 887 807 200 0 0 chr4 39686313 39686458 -115943662 - B1_Mur1 SINE Alu 0 149 5 3 887 251 311 112 10 chr4 39686458 39686743 -115943377 - L1MD LINE L1 -3063 3083 2774 3 887 1111 305 84 22 chr4 39686911 39687410 -115942710 + RMER5 LTR ERV1 4 533 -1 3 887 299 295 0 0 chr4 39688177 39688255 -115941865 + ID2 SINE ID 3 80 -3 3 887 242 217 42 28 chr4 39688569 39688640 -115941480 + MTE2a LTR MaLR 1 72 -347 3 887 21 82 0 0 chr4 39689118 39689167 -115940953 + AT_rich Low_complexity Low_complexity 1 49 0 3 887 279 218 38 25 chr4 39689175 39689255 -115940865 - ID4 SINE ID -2 81 1 3 887 21 36 0 0 chr4 39689672 39689700 -115940420 + AT_rich Low_complexity Low_complexity 1 28 0 3 887 680 265 35 18 chr4 39689842 39690011 -115940109 - B3A SINE B2 0 198 27 3 887 324 0 0 0 chr4 39690278 39690314 -115939806 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 887 540 81 0 0 chr4 39690314 39690388 -115939732 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 887 1214 90 0 6 chr4 39690532 39690711 -115939409 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 887 468 51 0 0 chr4 39690711 39690770 -115939350 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 887 3385 208 70 18 chr4 39691468 39691678 -115938442 - Lx7 LINE L1 0 7696 7460 3 887 477 0 0 0 chr4 39691678 39691731 -115938389 + (TAA)n Simple_repeat Simple_repeat 2 54 0 3 887 3385 208 70 18 chr4 39691731 39692362 -115937758 - Lx7 LINE L1 -237 7459 6812 3 887 22722 159 26 8 chr4 39692389 39695065 -115935055 - Lx LINE L1 -1 6653 3856 3 887 243 0 0 0 chr4 39695065 39695092 -115935028 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 887 22722 158 35 12 chr4 39695092 39697867 -115932253 - Lx LINE L1 -2028 3855 1074 3 887 180 0 0 0 chr4 39697867 39697887 -115932233 + (CAT)n Simple_repeat Simple_repeat 2 21 0 3 887 5736 124 17 12 chr4 39697887 39698560 -115931560 - Lx LINE L1 -5584 1073 402 3 887 4445 214 52 55 chr4 39698571 39699853 -115930267 - Lx7 LINE L1 -926 6770 5461 3 887 4558 166 26 39 chr4 39699853 39700773 -115929347 - RMER13B LTR ERVK 0 908 1 3 887 1912 194 45 119 chr4 39700773 39701043 -115929077 - Lx7 LINE L1 -420 5460 5247 3 887 188 23 65 43 chr4 39701043 39701089 -115929031 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 887 1932 164 51 10 chr4 39701089 39701170 -115928950 - Lx7 LINE L1 -1161 4719 4628 3 887 459 0 0 0 chr4 39701170 39701221 -115928899 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 887 513 0 0 0 chr4 39701221 39701277 -115928843 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 887 1932 164 51 10 chr4 39701277 39701607 -115928513 - Lx7 LINE L1 -1253 4627 4291 3 887 27 49 0 0 chr4 39701607 39701648 -115928472 + AT_rich Low_complexity Low_complexity 1 41 0 3 887 276 130 0 0 chr4 39701750 39701796 -115928324 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 3 887 1435 248 13 16 chr4 39701812 39702124 -115927996 - MTD LTR MaLR -3 416 106 3 887 36891 5 0 0 chr4 39702128 39707570 -115922550 + L1Md_A LINE L1 145 5586 -297 3 887 9046 4 0 0 chr4 39707570 39708566 -115921554 + L1Md_A LINE L1 5587 6582 0 3 887 571 227 0 0 chr4 39708567 39708677 -115921443 - MTD LTR MaLR -302 117 8 3 887 23 0 0 0 chr4 39708932 39708955 -115921165 + AT_rich Low_complexity Low_complexity 1 23 0 3 887 1699 274 40 28 chr4 39709126 39710417 -115919703 - Lx6 LINE L1 -26 7434 5859 3 887 26 50 0 0 chr4 39710422 39710462 -115919658 + AT_rich Low_complexity Low_complexity 1 40 0 3 887 4264 217 39 2 chr4 39710481 39711388 -115918732 - Lx6 LINE L1 -5 7455 6516 3 887 320 260 19 57 chr4 39711390 39711496 -115918624 - Lx5 LINE L1 -69 6981 6880 3 887 1919 170 9 6 chr4 39711496 39711839 -115918281 - Lx6 LINE L1 -71 5809 5466 3 887 228 255 0 19 chr4 39712054 39712106 -115918014 - RSINE1 SINE B4 -104 61 11 3 887 410 283 86 98 chr4 39713071 39713376 -115916744 + B4 SINE B4 8 280 -12 3 888 28 29 0 0 chr4 39715467 39715502 -115914618 + AT_rich Low_complexity Low_complexity 1 35 0 3 888 25 31 0 0 chr4 39715582 39715614 -115914506 + AT_rich Low_complexity Low_complexity 1 32 0 3 888 22 0 0 0 chr4 39715712 39715734 -115914386 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 2411 138 5 67 chr4 39715755 39716175 -115913945 - ORR1B1 LTR MaLR 0 394 1 3 888 381 253 56 12 chr4 39716828 39716988 -115913132 - L1_Rod LINE L1 -1574 4273 4107 3 888 294 336 48 0 chr4 39716987 39717112 -115913008 + Lx9 LINE L1 6585 6715 -929 3 888 2888 141 97 30 chr4 39717112 39717351 -115912769 - RMER6C LTR ERVK -49 641 388 3 888 258 125 0 0 chr4 39717351 39717399 -115912721 + (AACTG)n Simple_repeat Simple_repeat 2 49 0 3 888 2888 141 97 30 chr4 39717399 39717758 -115912362 - RMER6C LTR ERVK -303 387 3 3 888 1231 282 120 32 chr4 39717760 39718419 -115911701 + Lx9 LINE L1 6890 7606 -38 3 888 29 0 0 0 chr4 39718463 39718492 -115911628 + AT_rich Low_complexity Low_complexity 1 29 0 3 888 7619 60 0 6 chr4 39718574 39719545 -115910575 + L1Md_F2 LINE L1 5615 6579 -3 3 888 426 20 0 0 chr4 39719736 39719787 -115910333 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 888 306 0 0 0 chr4 39719787 39719820 -115910300 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 888 819 275 150 19 chr4 39720516 39720828 -115909292 + MTEb LTR MaLR 2 354 -5 3 888 36805 7 0 0 chr4 39721309 39726889 -115903231 + L1Md_A LINE L1 7 5586 -297 3 888 9018 3 1 0 chr4 39726889 39727884 -115902236 + L1Md_A LINE L1 5587 6582 0 3 888 4303 163 29 6 chr4 39728183 39729190 -115900930 - Lx5 LINE L1 -645 6405 5366 3 888 270 136 0 0 chr4 39730682 39730726 -115899394 + (CTG)n Simple_repeat Simple_repeat 1 44 0 3 888 387 0 0 0 chr4 39730826 39730869 -115899251 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 888 305 357 24 0 chr4 39731333 39731417 -115898703 + ID SINE ID 3 88 -136 3 888 1052 230 168 12 chr4 39731422 39731743 -115898377 - MTD LTR MaLR 0 419 49 3 888 310 383 39 15 chr4 39731774 39731904 -115898216 + ID_B1 SINE B4 86 218 -6 3 888 307 233 121 11 chr4 39732298 39732389 -115897731 - B1_Mur2 SINE Alu -8 141 41 3 888 362 265 28 84 chr4 39734186 39734293 -115895827 + B3A SINE B2 1 101 -94 3 888 22 0 0 0 chr4 39734380 39734402 -115895718 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 1143 314 36 16 chr4 39735965 39736411 -115893709 - Lx8 LINE L1 -292 7181 6727 3 888 4705 36 0 0 chr4 39736428 39737039 -115893081 - L1Md_T LINE L1 0 6582 6032 3 888 342 272 48 0 chr4 39737051 39737154 -115892966 - Lx8 LINE L1 -767 6706 6599 3 888 900 262 59 11 chr4 39737166 39737436 -115892684 + Lx8 LINE L1 6263 6545 -928 3 888 585 313 37 49 chr4 39738181 39738449 -115891671 - ORR1E LTR MaLR -104 266 9 3 888 371 213 0 26 chr4 39738645 39738722 -115891398 + MTEa LTR MaLR 305 379 0 3 888 229 346 124 34 chr4 39740767 39740976 -115889144 + L2 LINE L2 1887 2114 -1305 3 888 496 205 167 38 chr4 39741159 39741291 -115888829 - B1_Mur1 SINE Alu 0 149 1 3 888 372 208 0 0 chr4 39742354 39742455 -115887665 + CT-rich Low_complexity Low_complexity 2 102 0 3 888 856 178 74 0 chr4 39744088 39744251 -115885869 + RMER4B LTR ERVK 249 423 -162 3 888 229 356 72 76 chr4 39745075 39745339 -115884781 - ORR1D1 LTR MaLR -34 340 78 3 888 423 0 0 0 chr4 39746088 39746135 -115883985 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 888 21 89 0 0 chr4 39746212 39746268 -115883852 + AT_rich Low_complexity Low_complexity 1 56 0 3 888 1362 53 0 0 chr4 39746546 39746717 -115883403 - L1Md_T LINE L1 0 6582 6412 3 888 1634 162 46 20 chr4 39747491 39747794 -115882326 - Lx4A LINE L1 -1 7057 6747 3 888 235 170 0 0 chr4 39747800 39747847 -115882273 - RMER19B LTR ERVK -12 890 844 3 888 24139 50 5 2 chr4 39747847 39751051 -115879069 + L1_Mm LINE L1 2372 5586 -297 3 888 7528 61 16 8 chr4 39751051 39752024 -115878096 + L1Md_F2 LINE L1 5588 6568 -14 3 888 2598 98 13 3 chr4 39752030 39752421 -115877699 + L1_Mus2 LINE L1 6004 6398 -168 3 888 277 315 142 0 chr4 39752586 39752713 -115877407 + MLT1F-int LTR MaLR 540 684 -805 3 888 333 306 30 75 chr4 39752967 39753168 -115876952 - L1MC5 LINE L1 -638 7323 7132 3 888 302 203 108 0 chr4 39753201 39753275 -115876845 - LTR37A LTR ERV1 -21 405 324 3 888 1409 220 110 27 chr4 39753291 39753664 -115876456 - MTD LTR MaLR -13 406 3 3 888 22 0 0 0 chr4 39753913 39753935 -115876185 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 237 384 66 28 chr4 39754926 39755108 -115875012 + L2b LINE L2 2110 2298 -1121 3 888 1823 242 63 34 chr4 39755419 39755971 -115874149 + Lx8 LINE L1 6639 7206 -267 3 888 293 328 103 52 chr4 39756187 39756555 -115873565 + L2b LINE L2 3019 3424 -2 3 888 569 299 14 7 chr4 39756745 39756893 -115873227 + RSINE1 SINE B4 3 151 -14 3 888 474 18 0 0 chr4 39756895 39756950 -115873170 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 888 21 57 0 0 chr4 39757752 39757787 -115872333 + AT_rich Low_complexity Low_complexity 1 35 0 3 888 195 69 0 0 chr4 39758094 39758123 -115871997 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 3 888 309 51 0 0 chr4 39758170 39758209 -115871911 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 888 288 0 0 0 chr4 39759504 39759536 -115870584 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 888 231 318 0 0 chr4 39761422 39761488 -115868632 + MLT1E3 LTR MaLR 554 619 -5 3 888 186 244 133 44 chr4 39761667 39761757 -115868363 - MIRm SINE MIR -124 152 55 3 888 314 295 0 31 chr4 39762008 39762106 -115868014 + MLT1A1 LTR MaLR 313 407 -1 3 888 355 366 70 13 chr4 39762106 39762336 -115867784 - HAL1 LINE L1 -578 1929 1687 3 888 520 15 0 0 chr4 39762389 39762455 -115867665 - L1Md_T LINE L1 -2 6580 6515 3 888 268 332 129 40 chr4 39762882 39763083 -115867037 + B4 SINE B4 70 288 -4 3 888 183 100 0 0 chr4 39763108 39763138 -115866982 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 888 339 25 0 0 chr4 39763550 39763590 -115866530 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 888 302 289 15 83 chr4 39764055 39764187 -115865933 + MER31A LTR ERV1 363 485 0 3 888 1970 196 30 43 chr4 39764691 39765155 -115864965 + RLTR20B3 LTR ERVK 93 550 -27 3 888 262 43 42 21 chr4 39765575 39765623 -115864497 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 3 888 433 275 244 41 chr4 39766021 39766287 -115863833 + LTR48 LTR ERV1 10 370 -417 4 888 284 264 86 60 chr4 39766335 39766452 -115863668 + LTR48 LTR ERV1 427 546 -98 4 888 486 347 34 63 chr4 39766542 39766810 -115863310 + MLT1G LTR MaLR 99 358 -233 4 888 802 174 8 0 chr4 39767229 39767361 -115862759 + B1_Mur2 SINE Alu 6 138 -11 4 888 371 258 21 111 chr4 39768240 39768270 -115861850 + MT2B LTR ERVL 140 156 -445 4 888 713 148 16 0 chr4 39768270 39768392 -115861728 + B1_Mus1 SINE Alu 1 124 -24 4 888 322 191 44 0 chr4 39768393 39768461 -115861659 + B1_Mur3 SINE Alu 67 137 -12 4 888 694 197 59 0 chr4 39768448 39768600 -115861520 + RMER4B LTR ERVK 17 177 -408 4 888 234 319 58 33 chr4 39768734 39768854 -115861266 + RMER4B LTR ERVK 454 576 -9 4 888 283 262 0 15 chr4 39769011 39769077 -115861043 + ID4 SINE ID 16 80 -3 4 888 288 261 0 0 chr4 39769019 39769084 -115861036 + ID SINE ID 24 88 -136 4 888 1140 63 0 14 chr4 39769194 39769339 -115860781 + B1_Mm SINE Alu 5 147 0 4 888 480 214 26 13 chr4 39769897 39770053 -115860067 + (CATATA)n Simple_repeat Simple_repeat 1 158 0 4 888 220 243 27 0 chr4 39771619 39771693 -115858427 + A-rich Low_complexity Low_complexity 6 81 0 4 888 383 270 100 39 chr4 39771821 39772052 -115858068 + L1M4b LINE L1 1510 1754 -5580 4 888 5085 232 67 49 chr4 39772052 39773432 -115856688 - RMER12B LTR ERVK 0 1404 1 4 888 384 220 50 8 chr4 39773560 39773679 -115856441 + L1_Mur3 LINE L1 1525 1648 -4232 4 888 452 269 20 19 chr4 39773936 39774187 -115855933 + L1_Mur3 LINE L1 2206 2437 -3443 4 888 578 305 50 49 chr4 39774256 39774870 -115855250 + L1M4b LINE L1 3539 4153 -2850 4 888 1183 54 0 7 chr4 39774870 39775019 -115855101 + B1_Mus1 SINE Alu 1 148 0 4 888 205 51 25 25 chr4 39775020 39775060 -115855060 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 4 888 1219 326 91 14 chr4 39775068 39775718 -115854402 + Lx8 LINE L1 6670 7369 -104 4 888 3062 74 5 2 chr4 39775874 39776308 -115853812 - L1_Mus3 LINE L1 0 6638 6204 4 888 7124 61 14 8 chr4 39776334 39777929 -115852191 - L1Md_F2 LINE L1 0 6582 4985 4 888 7971 63 0 0 chr4 39777931 39779001 -115851119 + L1Md_F2 LINE L1 3929 4998 -885 4 888 876 314 34 26 chr4 39779363 39779379 -115850741 + B4A SINE B4 26 39 -253 4 888 3374 38 2 0 chr4 39779379 39779774 -115850346 + MTA_Mm LTR MaLR 1 396 0 4 888 876 314 34 26 chr4 39779774 39780022 -115850098 + B4A SINE B4 40 292 0 4 888 433 191 0 19 chr4 39780026 39780133 -115849987 + (CA)n Simple_repeat Simple_repeat 2 106 0 4 888 204 158 0 0 chr4 39780605 39780643 -115849477 + A-rich Low_complexity Low_complexity 1 38 0 4 888 297 280 45 82 chr4 39781654 39781725 -115848395 + PB1D10 SINE Alu 17 86 -63 4 888 324 0 0 0 chr4 39781725 39781761 -115848359 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 888 281 280 46 83 chr4 39781761 39781799 -115848321 + B1F SINE Alu 87 122 -27 4 888 3616 204 56 15 chr4 39781799 39782645 -115847475 - Lx9 LINE L1 -208 7436 6557 4 888 603 273 100 68 chr4 39782705 39783015 -115847105 - ORR1E LTR MaLR -1 358 39 4 888 396 0 0 0 chr4 39783364 39783408 -115846712 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 888 2905 144 78 4 chr4 39783410 39783925 -115846195 - RMER1B Other Other -22 1044 492 4 888 437 281 156 60 chr4 39784499 39785032 -115845088 - L1M3 LINE L1 -3274 2869 2286 4 888 707 256 23 6 chr4 39785103 39785280 -115844840 - B4A SINE B4 -105 187 8 4 888 454 201 149 12 chr4 39785291 39785452 -115844668 - L1M3 LINE L1 -3848 2292 2110 4 888 892 314 155 33 chr4 39786685 39787115 -115843005 + MLT2B4 LTR ERVL 1 490 -66 4 888 387 0 0 0 chr4 39787115 39787158 -115842962 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 888 892 314 155 33 chr4 39787158 39787218 -115842902 + MLT2B4 LTR ERVL 491 551 -5 4 888 820 141 4 47 chr4 39787421 39787664 -115842456 + GA-rich Low_complexity Low_complexity 1 232 0 4 888 731 194 0 6 chr4 39787654 39787673 -115842447 + polypurine Low_complexity Low_complexity 1 19 0 4 888 1115 79 17 6 chr4 39787673 39787851 -115842269 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 888 731 194 0 6 chr4 39787851 39788012 -115842108 + GA-rich Low_complexity Low_complexity 20 179 0 4 888 237 173 0 0 chr4 39788039 39788072 -115842048 + polypurine Low_complexity Low_complexity 1 33 0 4 888 1043 139 0 6 chr4 39788072 39788253 -115841867 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 888 237 173 0 0 chr4 39788253 39788271 -115841849 + polypurine Low_complexity Low_complexity 34 51 0 4 888 1177 218 238 55 chr4 39788815 39789280 -115840840 + MT2B LTR ERVL 3 544 -57 4 888 450 0 0 0 chr4 39789280 39789330 -115840790 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 888 316 252 63 94 chr4 39789330 39789349 -115840771 + MT2B LTR ERVL 443 462 -31 4 888 306 0 0 0 chr4 39789439 39789473 -115840647 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 888 278 116 0 0 chr4 39789475 39789518 -115840602 + MT2B LTR ERVL 542 584 0 4 888 23 86 0 0 chr4 39790129 39790187 -115839933 + AT_rich Low_complexity Low_complexity 1 58 0 4 888 237 265 44 29 chr4 39790641 39790777 -115839343 + L1M5 LINE L1 5686 5823 -339 4 888 21 0 0 0 chr4 39791123 39791144 -115838976 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 184 167 222 37 chr4 39792268 39792349 -115837771 - L3 LINE CR1 -140 4349 4254 4 888 415 305 8 8 chr4 39792487 39792619 -115837501 + MIR SINE MIR 108 239 -23 4 888 533 295 230 28 chr4 39792777 39793012 -115837108 + RMER15 LTR ERVL 250 532 -43 4 888 378 0 0 0 chr4 39793012 39793054 -115837066 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 888 507 60 0 0 chr4 39793054 39793120 -115837000 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 888 351 232 24 35 chr4 39793120 39793162 -115836958 + RMER15 LTR ERVL 533 574 -1 4 888 212 286 0 0 chr4 39793162 39793218 -115836902 + (TTA)n Simple_repeat Simple_repeat 1 56 0 4 888 910 339 61 8 chr4 39793279 39793657 -115836463 + Tigger7 DNA MER2_type 1 398 -2093 4 888 562 206 160 5 chr4 39793706 39793906 -115836214 + Tigger7 DNA MER2_type 2261 2491 0 4 888 299 342 8 98 chr4 39794106 39794148 -115835972 + B3A SINE B2 1 41 -157 4 888 1137 75 0 0 chr4 39794148 39794295 -115835825 + B1_Mm SINE Alu 1 147 0 4 888 299 350 19 100 chr4 39794295 39794421 -115835699 + B3A SINE B2 42 158 -58 4 888 1826 216 100 83 chr4 39795902 39796492 -115833628 - MT2B LTR ERVL 0 601 2 4 888 1613 184 3 16 chr4 39796765 39797068 -115833052 - RLTR31_Mur LTR ERVK -14 539 241 4 888 8612 27 1 0 chr4 39797068 39798814 -115831306 - L1Md_T LINE L1 -3 6579 4833 4 888 4393 64 8 3 chr4 39798796 39799420 -115830700 - L1Md_T LINE L1 -5656 1068 442 4 888 1283 140 40 16 chr4 39799420 39799667 -115830453 - RLTR31_Mm LTR ERVK -308 253 1 4 888 269 285 72 68 chr4 39799670 39799934 -115830186 + L1M6 LINE L1 1525 1789 -4707 4 888 5832 80 58 17 chr4 39800055 39800890 -115829230 - Lx3_Mus LINE L1 -2 7007 6139 4 888 7733 116 52 19 chr4 39800893 39803111 -115827009 + Lx3C LINE L1 4704 6975 -1 4 888 32063 73 0 16 chr4 39803126 39808330 -115821790 + L1Md_F2 LINE L1 469 5586 -297 4 888 7850 59 1 8 chr4 39808330 39809328 -115820792 + L1Md_F2 LINE L1 5587 6577 -5 4 888 32 0 0 0 chr4 39809328 39809360 -115820760 + AT_rich Low_complexity Low_complexity 1 32 0 4 888 228 67 0 0 chr4 39809360 39809390 -115820730 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 888 657 36 0 0 chr4 39809447 39809531 -115820589 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 888 364 301 35 29 chr4 39810403 39810574 -115819546 + L1M5 LINE L1 5650 5821 -303 4 888 266 296 0 24 chr4 39810790 39810873 -115819247 - ID4 SINE ID 0 83 3 4 888 333 228 0 0 chr4 39810943 39811022 -115819098 + GA-rich Low_complexity Low_complexity 2 80 0 4 888 1207 214 82 41 chr4 39811022 39811314 -115818806 - ORR1B2 LTR MaLR -58 309 6 4 888 1053 269 77 37 chr4 39811514 39812124 -115817996 + L1MA5A LINE L1 5160 5826 -471 4 888 1219 301 31 14 chr4 39812134 39812716 -115817404 - L1M2 LINE L1 -1021 5122 4531 4 888 337 87 0 0 chr4 39812719 39812765 -115817355 + U2 snRNA snRNA 1 46 -142 4 888 282 263 0 67 chr4 39812765 39812901 -115817219 - L1_Mm LINE L1 -1379 4504 4372 4 888 414 215 44 54 chr4 39812911 39813121 -115816999 + L1M2 LINE L1 5088 5316 -564 4 888 1066 15 0 22 chr4 39813121 39813259 -115816861 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 4 888 600 14 0 0 chr4 39813259 39813328 -115816792 + (GAGAA)n Simple_repeat Simple_repeat 1 69 0 4 888 258 270 92 70 chr4 39813328 39813431 -115816689 + L1M2 LINE L1 5317 5408 -472 4 888 3793 73 16 0 chr4 39813463 39813957 -115816163 + L1_Mus1 LINE L1 6066 6567 0 4 888 3705 181 34 34 chr4 39813961 39814754 -115815366 + RLTR40 LTR ERVK 21 813 -4 4 888 979 220 139 84 chr4 39814804 39815280 -115814840 + Lx7 LINE L1 7195 7696 0 4 888 308 325 139 30 chr4 39815293 39815632 -115814488 + L1_Rod LINE L1 5428 5803 -44 4 888 272 340 6 19 chr4 39816146 39816305 -115813815 + L1ME3B LINE L1 5488 5644 -596 4 888 319 322 160 17 chr4 39816520 39816605 -115813515 + L1ME3B LINE L1 5813 5926 -314 4 888 4605 100 10 22 chr4 39816605 39817288 -115812832 + Lx LINE L1 5980 6654 0 4 888 319 322 160 17 chr4 39817288 39817433 -115812687 + L1ME3B LINE L1 5927 6075 -165 4 888 360 0 0 0 chr4 39817474 39817514 -115812606 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 888 417 312 34 34 chr4 39817864 39818013 -115812107 + B1F2 SINE Alu 1 149 0 4 888 396 0 0 0 chr4 39819648 39819692 -115810428 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 888 213 282 30 46 chr4 39821429 39821508 -115808612 + MIRb SINE MIR 104 181 -87 4 888 290 390 14 41 chr4 39821626 39821773 -115808347 - L2b LINE L2 0 3375 3233 4 888 527 0 0 16 chr4 39822193 39822257 -115807863 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 888 508 282 8 0 chr4 39822263 39822380 -115807740 - RSINE1 SINE B4 -45 120 3 4 888 22 0 0 0 chr4 39822750 39822772 -115807348 + AT_rich Low_complexity Low_complexity 1 22 0 4 888 1103 218 63 111 chr4 39823181 39823559 -115806561 - Lx7 LINE L1 -1 7695 7336 4 888 1091 92 0 0 chr4 39823559 39823701 -115806419 + B1_Mus1 SINE Alu 2 143 -5 4 888 1103 218 63 111 chr4 39823701 39823782 -115806338 - Lx7 LINE L1 -361 7335 7258 4 888 1248 210 45 82 chr4 39823824 39824228 -115805892 - Lx5 LINE L1 -4 7046 6658 4 888 2553 200 39 58 chr4 39824219 39824913 -115805207 - Lx5 LINE L1 -7012 716 36 4 888 368 310 82 49 chr4 39825082 39825326 -115804794 - L1ME3A LINE L1 -267 5906 5655 4 888 306 214 0 0 chr4 39825385 39825469 -115804651 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 888 587 344 85 83 chr4 39825494 39825754 -115804366 - MT2A LTR ERVL -71 462 196 4 888 258 105 0 0 chr4 39825754 39825792 -115804328 + (CAG)n Simple_repeat Simple_repeat 2 39 0 4 888 587 344 85 83 chr4 39825792 39825988 -115804132 - MT2A LTR ERVL -338 195 5 4 888 2065 246 75 67 chr4 39825993 39826757 -115803363 - MERVL_2A-int LTR ERVL 0 5761 4992 4 888 1495 278 121 21 chr4 39826755 39827436 -115802684 - MERVL_2A-int LTR ERVL -951 4806 4062 4 888 1632 218 55 17 chr4 39827436 39827838 -115802282 - MTD LTR MaLR 0 419 3 5 888 720 201 21 48 chr4 39827838 39827989 -115802131 - MERVL_2A-int LTR ERVL -1700 4061 3910 4 888 17281 78 1 0 chr4 39828016 39831123 -115798997 - L1_Mus1 LINE L1 -1 6566 3459 5 888 395 320 92 69 chr4 39831335 39831902 -115798218 - L1M5 LINE L1 -3215 2931 2352 5 888 6175 91 5 13 chr4 39832216 39833656 -115796464 + L1Md_Gf LINE L1 191 1715 -4171 5 888 20555 128 26 80 chr4 39833655 39839049 -115791071 + L1Md_F2 LINE L1 483 5586 -297 5 888 8091 48 2 0 chr4 39839049 39840042 -115790078 + L1Md_F2 LINE L1 5587 6581 -1 5 888 1196 161 37 0 chr4 39840231 39840448 -115789672 - Lx LINE L1 -3 6651 6427 5 888 5680 134 70 10 chr4 39840448 39841639 -115788481 - Lx2 LINE L1 -354 6643 5359 5 888 9152 147 6 10 chr4 39843249 39844526 -115785594 - Lx2 LINE L1 -515 5362 4093 5 888 1194 55 0 0 chr4 39844526 39844671 -115785449 - B1_Mus2 SINE Alu -2 145 1 5 888 9152 147 6 10 chr4 39844671 39845045 -115785075 - Lx2 LINE L1 -1785 4092 3718 5 888 3613 94 25 13 chr4 39845038 39845641 -115784479 - MusHAL1 LINE L1 -1222 1490 881 5 888 1244 48 38 0 chr4 39845638 39845710 -115784410 - MusHAL1 LINE L1 -2149 563 487 5 888 297 0 0 0 chr4 39845710 39845743 -115784377 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 888 1244 48 38 0 chr4 39845743 39845856 -115784264 - MusHAL1 LINE L1 -2226 486 373 5 889 26 50 0 0 chr4 39846024 39846064 -115784056 + AT_rich Low_complexity Low_complexity 1 40 0 5 889 1276 168 0 0 chr4 39846068 39846282 -115783838 + L1VL4 LINE L1 162 375 -5927 5 889 213 253 0 0 chr4 39846398 39846544 -115783576 + CT-rich Low_complexity Low_complexity 1 146 0 5 889 358 320 23 83 chr4 39846626 39846759 -115783361 - PB1 SINE Alu -2 125 1 5 889 315 339 78 39 chr4 39847940 39848069 -115782051 + LTR88c LTR Genie? 3 136 -726 5 889 247 344 137 23 chr4 39848091 39848222 -115781898 + LTR88b LTR Gypsy? 30 175 -662 5 889 7985 38 6 1 chr4 39848768 39849731 -115780389 + L1Md_F2 LINE L1 5603 6570 -12 5 889 21 0 0 0 chr4 39849739 39849760 -115780360 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 546 16 0 0 chr4 39849774 39849837 -115780283 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 889 1866 144 146 36 chr4 39850443 39850849 -115779271 + L1_Mur3 LINE L1 3009 3473 -2407 5 889 1174 88 22 0 chr4 39850849 39851030 -115779090 + L1_Mus3 LINE L1 6449 6633 -5 5 889 1866 144 146 36 chr4 39851030 39851097 -115779023 + L1_Mur3 LINE L1 3474 3534 -2346 5 889 1534 117 20 0 chr4 39851099 39851348 -115778772 + L1_Mur3 LINE L1 4130 4383 -1494 5 889 3724 257 37 15 chr4 39851346 39852318 -115777802 + Lx5 LINE L1 5968 6960 -90 5 889 350 69 17 0 chr4 39852320 39852378 -115777742 + (TTAA)n Simple_repeat Simple_repeat 1 59 0 5 889 509 219 134 0 chr4 39853479 39853598 -115776522 - B1F SINE Alu -3 146 12 5 889 604 242 135 36 chr4 39853788 39853981 -115776139 - B3 SINE B2 -4 212 1 5 889 308 329 36 68 chr4 39854730 39854952 -115775168 + L1M6 LINE L1 128 342 -6154 5 889 706 224 91 16 chr4 39855170 39855356 -115774764 + B3 SINE B2 1 200 -16 5 889 282 56 0 0 chr4 39855356 39855392 -115774728 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 5 889 543 69 0 0 chr4 39855403 39855475 -115774645 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 889 911 312 17 32 chr4 39855482 39855889 -115774231 + Lx8 LINE L1 6202 6602 -871 5 889 4410 197 164 23 chr4 39855879 39857132 -115772988 + Lx7 LINE L1 6265 7694 -2 5 889 464 273 12 23 chr4 39857144 39857381 -115772739 + Lx9 LINE L1 5703 5973 -1671 5 889 184 344 0 32 chr4 39858432 39858495 -115771625 - L2 LINE L2 -552 2867 2807 5 889 705 24 0 0 chr4 39861164 39861247 -115768873 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 889 2606 169 92 2 chr4 39861564 39862063 -115768057 + RMER1B Other Other 523 1066 0 5 889 2680 147 31 20 chr4 39862454 39862911 -115767209 + Lx3A LINE L1 6511 6972 -9 5 889 1885 134 42 20 chr4 39863476 39863834 -115766286 - RMER1A Other Other 0 1030 665 5 889 742 237 31 25 chr4 39863862 39864022 -115766098 + B3A SINE B2 38 198 0 5 889 23 54 0 0 chr4 39864109 39864146 -115765974 + AT_rich Low_complexity Low_complexity 1 37 0 5 889 308 103 17 0 chr4 39864300 39864358 -115765762 + (TTATA)n Simple_repeat Simple_repeat 2 60 0 5 889 380 111 0 16 chr4 39865116 39865180 -115764940 + (TATG)n Simple_repeat Simple_repeat 2 64 0 5 889 1120 199 19 0 chr4 39865393 39865604 -115764516 + B3 SINE B2 2 216 0 5 889 3895 43 2 0 chr4 39865656 39866126 -115763994 - L1Md_T LINE L1 -1 6581 6111 5 889 526 325 37 16 chr4 39866788 39866979 -115763141 - MER58A DNA MER1_type -24 200 6 5 889 732 23 0 0 chr4 39866996 39867082 -115763038 + (TTTTC)n Simple_repeat Simple_repeat 2 87 0 5 889 235 356 48 9 chr4 39867253 39867358 -115762762 - MIRc SINE MIR -97 171 63 5 889 879 208 53 24 chr4 39867368 39867575 -115762545 + B3 SINE B2 1 213 -3 5 889 219 186 0 0 chr4 39867627 39867670 -115762450 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 889 1048 215 5 5 chr4 39868331 39868546 -115761574 - B3 SINE B2 0 216 2 5 889 1026 278 61 32 chr4 39868702 39868981 -115761139 - B4 SINE B4 0 292 6 5 889 1102 291 40 53 chr4 39869708 39870085 -115760035 - MTEa LTR MaLR -7 372 1 5 889 3536 8 5 0 chr4 39870483 39870877 -115759243 - MTA_Mm LTR MaLR 0 396 1 5 889 9576 18 2 0 chr4 39870877 39871973 -115758147 - MTA_Mm-int LTR MaLR 0 1098 1 5 889 3543 8 5 0 chr4 39871973 39872367 -115757753 - MTA_Mm LTR MaLR 0 396 1 5 889 516 328 72 5 chr4 39872442 39872635 -115757485 + MER63A DNA AcHobo 4 209 -1 5 889 24 0 0 0 chr4 39872640 39872664 -115757456 + AT_rich Low_complexity Low_complexity 1 24 0 5 889 360 0 0 0 chr4 39874326 39874366 -115755754 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 889 1056 106 0 0 chr4 39875036 39875215 -115754905 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 889 314 111 18 36 chr4 39875227 39875283 -115754837 - HAL1-3A_ME LINE L1 -828 2030 1976 5 889 1131 94 0 0 chr4 39875284 39875464 -115754656 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 889 213 39 0 0 chr4 39875855 39875881 -115754239 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 889 321 207 12 47 chr4 39876087 39876173 -115753947 + L1MC4a LINE L1 6597 6679 -1203 5 889 243 122 0 0 chr4 39876175 39876224 -115753896 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 889 359 0 43 0 chr4 39877090 39877136 -115752984 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 889 220 288 189 31 chr4 39877252 39877474 -115752646 + L2 LINE L2 2655 2911 -508 5 889 521 270 27 22 chr4 39877936 39878086 -115752034 + B3 SINE B2 2 216 0 5 889 384 330 104 22 chr4 39878135 39878318 -115751802 + B4A SINE B4 3 200 -92 5 889 501 62 0 0 chr4 39878375 39878440 -115751680 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 889 218 277 0 0 chr4 39878595 39878642 -115751478 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 889 2974 161 53 47 chr4 39878900 39879583 -115750537 + RMER6C LTR ERVK 4 690 0 5 889 582 150 342 0 chr4 39882434 39882546 -115747574 - Lx9 LINE L1 -1 7643 7518 5 889 195 129 0 0 chr4 39882546 39882577 -115747543 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 889 582 150 342 0 chr4 39882577 39882657 -115747463 - Lx9 LINE L1 -127 7517 7387 5 889 22 35 0 0 chr4 39882702 39882731 -115747389 + AT_rich Low_complexity Low_complexity 1 29 0 5 889 21 0 0 0 chr4 39882766 39882787 -115747333 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 402 21 0 0 chr4 39883069 39883116 -115747004 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 889 324 0 0 0 chr4 39883116 39883151 -115746969 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 889 960 284 99 21 chr4 39883176 39883510 -115746610 + MTE-int LTR MaLR 1213 1572 -8 5 889 215 193 35 0 chr4 39883600 39883615 -115746505 + (TAAA)n Simple_repeat Simple_repeat 2 16 0 5 889 1359 58 12 0 chr4 39883615 39883787 -115746333 + B2_Mm1a SINE B2 2 175 -18 5 889 215 193 35 0 chr4 39883787 39883828 -115746292 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 5 889 527 338 43 34 chr4 39884676 39884884 -115745236 + MER20 DNA MER1_type 7 216 -3 5 889 234 319 0 14 chr4 39884919 39884989 -115745131 + PB1D10 SINE Alu 42 110 -7 5 889 249 380 16 16 chr4 39885043 39885166 -115744954 - L2a LINE L2 -5 3421 3299 5 889 1131 289 95 8 chr4 39885207 39885577 -115744543 - MTD LTR MaLR 0 419 18 5 889 316 366 39 13 chr4 39885726 39885929 -115744191 - L2a LINE L2 -332 3094 2890 5 889 5949 156 31 4 chr4 39886085 39887770 -115742350 + Lx LINE L1 4921 6649 -5 5 889 207 304 54 11 chr4 39887777 39887870 -115742250 - L2a LINE L2 -722 2697 2601 5 889 396 271 150 60 chr4 39887870 39888161 -115741959 - ORR1E LTR MaLR 0 379 45 5 889 246 279 73 0 chr4 39889446 39889514 -115740606 - ID4_ SINE ID -9 74 2 5 889 224 163 20 39 chr4 39889522 39889573 -115740547 + (TTA)n Simple_repeat Simple_repeat 1 50 0 5 889 303 272 76 0 chr4 39889574 39889666 -115740454 - B1F SINE Alu -5 144 46 5 889 216 0 0 0 chr4 39889735 39889759 -115740361 + (A)n Simple_repeat Simple_repeat 1 24 0 5 889 596 162 0 0 chr4 39889844 39889955 -115740165 - L1_Mm LINE L1 -1207 4676 4566 5 889 294 316 0 25 chr4 39889955 39890036 -115740084 - PB1D10 SINE Alu -38 79 1 5 889 972 281 28 40 chr4 39890050 39890447 -115739673 + MER31-int LTR ERV1 3487 3878 -1058 5 889 422 320 10 0 chr4 39890603 39890699 -115739421 + PB1D10 SINE Alu 7 103 -14 5 889 322 295 9 62 chr4 39890699 39890811 -115739309 - RMER13B LTR ERVK 0 860 755 5 889 1993 207 25 76 chr4 39890792 39891268 -115738852 - RMER13B LTR ERVK -452 456 5 5 889 950 118 0 7 chr4 39891320 39891473 -115738647 + (GGAA)n Simple_repeat Simple_repeat 1 152 0 5 889 264 216 102 0 chr4 39891499 39891587 -115738533 + MER31-int LTR ERV1 4191 4287 -649 5 889 187 114 0 43 chr4 39891661 39891707 -115738413 + T-rich Low_complexity Low_complexity 2 45 0 5 889 421 111 63 0 chr4 39891968 39892031 -115738089 + ID4_ SINE ID 6 72 -11 5 889 1087 84 11 0 chr4 39892042 39892220 -115737900 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 889 336 48 0 0 chr4 39892222 39892264 -115737856 + (CCCCCT)n Simple_repeat Simple_repeat 5 46 0 5 889 1108 311 67 26 chr4 39893793 39894179 -115735941 - MTD LTR MaLR -12 407 6 5 889 546 320 152 4 chr4 39894196 39894466 -115735654 + MER89 LTR ERV1 249 558 -1 5 889 518 296 60 49 chr4 39894712 39894897 -115735223 + Charlie1a DNA MER1_type 16 202 -1253 6 889 1797 262 82 10 chr4 39895158 39895741 -115734379 + Charlie1a DNA MER1_type 323 947 -508 6 889 715 261 33 52 chr4 39895746 39895956 -115734164 + B3A SINE B2 11 216 0 6 889 867 264 126 17 chr4 39895998 39896403 -115733717 + Charlie1a DNA MER1_type 923 1371 -84 6 889 727 181 0 22 chr4 39896405 39896586 -115733534 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 889 181 210 16 16 chr4 39896582 39896645 -115733475 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 6 889 281 141 5 0 chr4 39896652 39896705 -115733415 - ORR1C2 LTR MaLR -4 380 327 6 889 3198 188 92 0 chr4 39896705 39897322 -115732798 - RMER1B Other Other -20 1046 373 6 889 1380 150 189 0 chr4 39897322 39897608 -115732512 - ORR1C2 LTR MaLR -39 345 6 6 889 204 135 0 0 chr4 39897693 39897730 -115732390 + (CAT)n Simple_repeat Simple_repeat 3 39 0 6 889 1573 174 83 0 chr4 39899285 39899635 -115730485 + Lx9 LINE L1 7265 7643 -1 6 889 2418 6 4 290 chr4 39899791 39900305 -115729815 - IAPLTR1_Mm LTR ERVK 0 367 1 6 889 27734 18 1 1 chr4 39900305 39903579 -115726541 - IAPEz-int LTR ERVK 0 6481 3210 6 889 6177 87 145 36 chr4 39903578 39904752 -115725368 - IAPEz-int LTR ERVK -5168 1313 67 6 889 953 86 159 0 chr4 39904723 39904886 -115725234 - IAPEz-int LTR ERVK -6285 196 8 6 889 2418 6 4 290 chr4 39904886 39905400 -115724720 - IAPLTR1_Mm LTR ERVK 0 367 1 6 889 327 25 0 0 chr4 39905529 39905569 -115724551 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 6 889 183 156 0 0 chr4 39906530 39906562 -115723558 + GA-rich Low_complexity Low_complexity 1 32 0 6 889 708 299 46 103 chr4 39907117 39907553 -115722567 + Lx8 LINE L1 7063 7473 0 6 889 29502 79 46 8 chr4 39907741 39912716 -115717404 + L1Md_F2 LINE L1 446 5585 -298 6 889 7850 60 5 0 chr4 39912717 39913708 -115716412 + L1Md_F2 LINE L1 5587 6582 0 6 889 181 217 21 21 chr4 39915996 39916043 -115714077 - MER5A DNA MER1_type -82 107 61 6 889 8296 130 32 3 chr4 39916304 39918334 -115711786 - Lx2 LINE L1 0 6997 4911 6 889 22 35 0 0 chr4 39918820 39918849 -115711271 + AT_rich Low_complexity Low_complexity 1 29 0 6 889 338 322 34 8 chr4 39918973 39919092 -115711028 - MER2B DNA MER2_type -1 335 214 6 889 432 0 0 0 chr4 39919942 39919990 -115710130 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 889 181 229 62 0 chr4 39920467 39920515 -115709605 - L2 LINE L2 -542 2877 2827 6 889 604 280 135 20 chr4 39920539 39920783 -115709337 + B4 SINE B4 16 287 -5 6 889 528 16 0 0 chr4 39920783 39920844 -115709276 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 889 675 335 79 35 chr4 39921110 39921730 -115708390 - HAL1 LINE L1 -1020 1487 841 6 889 382 295 109 5 chr4 39922331 39922515 -115707605 + L1M2 LINE L1 4827 5029 -1114 6 889 2931 290 44 19 chr4 39922554 39923664 -115706456 - Lx8 LINE L1 -5 7468 6331 6 889 4491 223 84 40 chr4 39923797 39924910 -115705210 + Lx6 LINE L1 6298 7458 -2 6 889 371 240 250 0 chr4 39925000 39925104 -115705016 - RSINE1 SINE B4 -31 134 5 6 889 262 241 69 0 chr4 39925644 39925731 -115704389 + Lx8 LINE L1 7034 7126 -347 6 889 771 302 8 21 chr4 39925853 39926093 -115704027 + RMER15 LTR ERVL 322 558 -17 6 889 486 146 0 0 chr4 39926121 39926203 -115703917 + (GGA)n Simple_repeat Simple_repeat 3 84 0 6 889 5640 100 19 49 chr4 39926257 39926694 -115703426 - L1_Mur2 LINE L1 -1976 3901 3471 6 889 392 67 0 16 chr4 39926694 39926755 -115703365 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 6 889 5640 100 19 49 chr4 39926755 39927326 -115702794 - L1_Mur2 LINE L1 -2407 3470 2923 6 889 3262 31 28 0 chr4 39927720 39928110 -115702010 + L1Md_F2 LINE L1 6169 6569 -13 6 889 213 39 0 0 chr4 39928117 39928143 -115701977 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 6 889 903 166 64 23 chr4 39928149 39928313 -115701807 + RLTR25B LTR ERVK 1 171 -857 6 889 431 243 69 158 chr4 39928313 39928660 -115701460 - RLTR25B LTR ERVK 0 1028 713 6 889 37 23 0 0 chr4 39928798 39928842 -115701278 + AT_rich Low_complexity Low_complexity 1 44 0 6 889 4555 152 47 133 chr4 39930008 39930719 -115699401 + RLTR25B LTR ERVK 1 743 -285 6 889 240 35 0 0 chr4 39930719 39930748 -115699372 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 889 437 0 19 0 chr4 39930748 39930800 -115699320 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 889 4555 152 47 133 chr4 39930800 39931212 -115698908 + RLTR25B LTR ERVK 744 1027 -1 6 889 252 86 0 0 chr4 39931359 39931394 -115698726 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 889 2861 272 73 12 chr4 39931796 39932748 -115697372 + Lx8 LINE L1 6270 7307 -166 6 889 496 285 92 92 chr4 39932990 39933361 -115696759 - L1MEg LINE L1 -4488 1927 1557 6 889 797 182 4 0 chr4 39933361 39933610 -115696510 + (TG)n Simple_repeat Simple_repeat 1 250 0 6 889 333 223 68 54 chr4 39934075 39934222 -115695898 - L1MEg LINE L1 -5235 1165 1017 6 889 234 299 149 36 chr4 39934348 39934650 -115695470 - L1MEg LINE L1 -5546 854 519 6 889 304 318 86 49 chr4 39934650 39934812 -115695308 - MIRb SINE MIR -72 196 29 6 889 725 286 110 15 chr4 39935089 39935352 -115694768 + B4A SINE B4 5 292 0 6 889 5190 102 103 38 chr4 39935371 39935676 -115694444 + RMER17A2 LTR ERVK 1 343 -563 6 889 548 14 14 0 chr4 39935676 39935745 -115694375 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 889 5190 102 103 38 chr4 39935745 39936286 -115693834 + RMER17A2 LTR ERVK 344 901 -5 6 889 309 109 0 0 chr4 39936287 39936333 -115693787 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 889 1748 196 104 53 chr4 39936583 39936976 -115693144 - MTD LTR MaLR -6 413 1 6 889 35 54 0 0 chr4 39937992 39938048 -115692072 + AT_rich Low_complexity Low_complexity 1 56 0 6 889 392 130 14 0 chr4 39938123 39938192 -115691928 + (TATG)n Simple_repeat Simple_repeat 2 71 0 6 889 505 298 65 72 chr4 39939532 39939617 -115690503 - B4A SINE B4 0 292 215 6 889 399 56 0 0 chr4 39939617 39939671 -115690449 + (TTTTG)n Simple_repeat Simple_repeat 5 58 0 6 889 505 298 65 72 chr4 39939671 39939878 -115690242 - B4A SINE B4 -78 214 3 6 889 2095 119 22 9 chr4 39940975 39941298 -115688822 + ORR1A2 LTR MaLR 1 327 0 6 889 9147 146 18 67 chr4 39941298 39943041 -115687079 + ORR1A2-int LTR MaLR 1 1658 -134 6 889 351 0 0 0 chr4 39943041 39943080 -115687040 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 889 4615 87 0 5 chr4 39943080 39943692 -115686428 - L1Md_F2 LINE L1 -23 6559 5951 6 889 770 126 67 0 chr4 39943692 39943827 -115686293 + ORR1A2-int LTR MaLR 1819 1962 -1 6 889 1776 127 123 3 chr4 39943828 39944120 -115686000 + ORR1A2 LTR MaLR 1 327 0 6 889 415 341 15 8 chr4 39944259 39944389 -115685731 - RSINE1 SINE B4 -22 143 13 6 889 302 249 8 16 chr4 39944668 39944775 -115685345 + B1F SINE Alu 17 149 0 6 889 353 278 65 13 chr4 39944782 39944935 -115685185 - ORSL DNA Tip100 -79 196 36 6 889 336 291 27 18 chr4 39945279 39945391 -115684729 - PB1D10 SINE Alu 0 117 5 6 889 573 202 27 18 chr4 39945706 39945817 -115684303 - L1MC4 LINE L1 -539 7503 7392 6 889 485 80 13 0 chr4 39946081 39946156 -115683964 + L1_Mm LINE L1 1347 1422 -4461 6 889 352 253 181 57 chr4 39946177 39946508 -115683612 + L1MD2 LINE L1 5808 6179 -180 6 889 253 278 78 0 chr4 39946536 39946626 -115683494 + L1MD2 LINE L1 6242 6338 -21 6 889 2163 215 38 103 chr4 39946748 39947401 -115682719 + RMER19C LTR ERVK 1 611 0 6 889 21 0 0 0 chr4 39948045 39948066 -115682054 + AT_rich Low_complexity Low_complexity 1 21 0 6 889 677 103 8 0 chr4 39949283 39949400 -115680720 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 889 25 0 0 0 chr4 39950105 39950130 -115679990 + AT_rich Low_complexity Low_complexity 1 25 0 6 889 1682 140 109 32 chr4 39950257 39950604 -115679516 - ORR1D1 LTR MaLR 0 374 1 6 889 774 204 80 80 chr4 39951661 39951874 -115678246 - B3 SINE B2 -3 213 1 6 889 394 266 205 5 chr4 39952023 39952238 -115677882 - MTD LTR MaLR 0 419 162 6 889 1033 209 6 126 chr4 39952241 39952558 -115677562 + RMER19C LTR ERVK 1 279 -332 6 889 1147 242 128 26 chr4 39952566 39952980 -115677140 + RMER19B LTR ERVK 156 902 0 6 889 229 267 0 0 chr4 39952984 39953039 -115677081 - MTD LTR MaLR -262 159 105 6 889 689 255 0 7 chr4 39953039 39953189 -115676931 + B1_Mur3 SINE Alu 1 149 0 6 889 879 195 15 40 chr4 39953193 39953391 -115676729 + B2_Mm2 SINE B2 3 195 0 6 889 185 116 0 85 chr4 39953962 39954009 -115676111 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 889 211 343 78 45 chr4 39954587 39954831 -115675289 + L2c LINE L2 3088 3339 -48 6 889 23 0 0 0 chr4 39955308 39955331 -115674789 + AT_rich Low_complexity Low_complexity 1 23 0 6 889 387 0 0 0 chr4 39956732 39956775 -115673345 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 889 197 130 43 0 chr4 39956775 39956821 -115673299 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 6 889 294 164 0 0 chr4 39957373 39957428 -115672692 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 889 279 0 0 0 chr4 39958114 39958145 -115671975 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 889 793 145 137 0 chr4 39958511 39958642 -115671478 + B1_Mur4 SINE Alu 1 149 -1 6 889 2735 227 18 7 chr4 39959071 39959621 -115670499 - Lx6 LINE L1 -834 6626 6071 6 889 2231 162 17 53 chr4 39959621 39960038 -115670082 + Lx6 LINE L1 6603 7004 -456 6 889 231 267 0 48 chr4 39960050 39960113 -115670007 - RMER21B LTR ERV1 -114 833 774 6 889 298 291 110 39 chr4 39960259 39960413 -115669707 - RMER21B LTR ERV1 -331 511 347 6 889 1923 247 28 30 chr4 39960534 39961006 -115669114 + Lx6 LINE L1 6990 7460 0 6 889 534 119 0 0 chr4 39961594 39961678 -115668442 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 889 215 283 0 0 chr4 39961681 39961741 -115668379 + GA-rich Low_complexity Low_complexity 1 60 0 6 889 221 331 47 29 chr4 39963052 39963223 -115666897 - L2 LINE L2 -1290 2129 1956 6 889 225 0 0 0 chr4 39964367 39964392 -115665728 + (A)n Simple_repeat Simple_repeat 1 25 0 6 889 1727 272 42 33 chr4 39965595 39965675 -115664445 + Lx8 LINE L1 6112 6196 -1277 6 889 441 0 0 0 chr4 39965675 39965724 -115664396 + (CATA)n Simple_repeat Simple_repeat 2 50 0 6 889 1727 272 42 33 chr4 39965724 39966190 -115663930 + Lx8 LINE L1 6197 6663 -810 6 889 225 311 82 25 chr4 39966287 39966409 -115663711 + Lx8 LINE L1 6068 6196 -1277 6 889 765 66 25 0 chr4 39966460 39966581 -115663539 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 6 889 583 273 131 83 chr4 39966632 39967076 -115663044 + Lx8 LINE L1 7009 7473 0 6 889 1954 131 115 19 chr4 39967729 39968094 -115662026 + RLTR9D LTR ERVK 1 400 -3 6 889 227 268 18 0 chr4 39968096 39968152 -115661968 - L1MA10 LINE L1 -98 6236 6180 6 889 223 272 0 0 chr4 39968234 39968294 -115661826 + ID4_ SINE ID 30 89 -63 6 889 1391 256 19 27 chr4 39968315 39968680 -115661440 + ORR1D2 LTR MaLR 9 370 0 6 889 393 260 10 0 chr4 39968793 39968889 -115661231 + ID_B1 SINE B4 107 203 -21 6 889 548 359 49 8 chr4 39969085 39969349 -115660771 + MLT1F2 LTR MaLR 56 330 -230 6 889 273 262 67 15 chr4 39969512 39969659 -115660461 - MIR SINE MIR -83 179 33 6 889 208 245 20 0 chr4 39971065 39971114 -115659006 + CT-rich Low_complexity Low_complexity 3 52 0 6 889 202 296 0 0 chr4 39971537 39971591 -115658529 + GA-rich Low_complexity Low_complexity 3 56 0 7 889 348 234 0 0 chr4 39972771 39972865 -115657255 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 889 497 209 27 33 chr4 39972947 39973069 -115657051 + Lx9 LINE L1 6622 6826 -818 7 889 864 191 6 0 chr4 39973080 39973242 -115656878 + Lx9 LINE L1 6762 6924 -720 7 889 2974 93 75 2 chr4 39973242 39973685 -115656435 - IAPLTR2_Mm LTR ERVK 0 475 1 7 889 6923 35 11 11 chr4 39973687 39974514 -115655606 - IAPEz-int LTR ERVK -2 6479 5653 7 889 2686 76 0 3 chr4 39974509 39974852 -115655268 - IAPEz-int LTR ERVK -4781 1700 1359 7 889 3406 111 46 69 chr4 39974852 39975759 -115654361 - IAPEz-int LTR ERVK -5819 662 9 7 889 3013 84 75 2 chr4 39975760 39976203 -115653917 - IAPLTR2_Mm LTR ERVK 0 475 1 7 889 1225 182 224 110 chr4 39976203 39976851 -115653269 + Lx9 LINE L1 6919 7640 -4 7 111 1120 66 12 0 chr4 39976851 39977018 -115653102 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 7 890 502 268 92 0 chr4 39977960 39978102 -115652018 + RSINE1 SINE B4 11 165 0 7 890 465 148 0 0 chr4 39978104 39978185 -115651935 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 890 339 85 0 0 chr4 39978318 39978365 -115651755 + (ATG)n Simple_repeat Simple_repeat 1 47 0 7 890 312 295 22 37 chr4 39978386 39978520 -115651600 + MER5A1 DNA MER1_type 2 133 -33 7 890 376 282 16 64 chr4 39978810 39978935 -115651185 - B3A SINE B2 -67 131 13 7 890 343 248 47 62 chr4 39979031 39979160 -115650960 - MLT1K LTR MaLR 0 595 469 7 890 1485 166 152 86 chr4 39979200 39979595 -115650525 - MTC LTR MaLR 0 421 1 7 890 3710 42 11 2 chr4 39981236 39981688 -115648432 + L1Md_F3 LINE L1 6129 6584 0 7 890 1290 313 41 67 chr4 39981862 39982289 -115647831 + Lx8 LINE L1 5705 6125 -1348 7 890 2490 159 56 0 chr4 39982289 39982684 -115647436 + MTC LTR MaLR 5 421 0 7 890 1290 319 167 51 chr4 39982684 39983566 -115646554 + Lx8 LINE L1 6126 7105 -368 7 890 1517 62 20 0 chr4 39983558 39983753 -115646367 - Lx3B LINE L1 -1036 5937 5739 7 890 7870 87 16 11 chr4 39983757 39985245 -115644875 - L1_Mus1 LINE L1 0 6654 5076 7 890 5772 153 34 9 chr4 39985245 39986266 -115643854 + Lx3C LINE L1 5928 6974 -2 7 890 345 346 7 7 chr4 39986284 39986421 -115643699 + Lx8 LINE L1 7097 7233 -240 7 890 198 0 0 0 chr4 39986428 39986450 -115643670 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 890 282 73 0 0 chr4 39986541 39986582 -115643538 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 890 540 0 0 0 chr4 39987103 39987163 -115642957 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 7 890 242 211 58 0 chr4 39987857 39987909 -115642211 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 7 890 418 259 184 23 chr4 39987995 39988212 -115641908 - MLT2B1 LTR ERVL -266 254 3 7 890 321 26 0 0 chr4 39988372 39988410 -115641710 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 890 267 177 0 0 chr4 39988450 39988512 -115641608 + A-rich Low_complexity Low_complexity 1 62 0 7 890 5848 102 9 6 chr4 39988512 39989362 -115640758 + L1_Mus4 LINE L1 5783 6635 -1 7 890 356 236 56 0 chr4 39989782 39989871 -115640249 + RSINE1 SINE B4 11 104 -61 7 890 236 209 127 0 chr4 39989985 39990058 -115640062 - ID4_ SINE ID -63 89 1 7 890 291 114 0 0 chr4 39990252 39990296 -115639824 + (TATG)n Simple_repeat Simple_repeat 3 46 0 7 890 521 261 21 21 chr4 39990309 39990450 -115639670 - RSINE1 SINE B4 -22 143 3 7 890 250 297 161 0 chr4 39991438 39991556 -115638564 + MER91B DNA Tip100 24 160 -30 7 890 1617 161 209 0 chr4 39991663 39991979 -115638141 - RLTR14 LTR ERV1 0 382 1 7 890 2354 85 25 12 chr4 39992268 39992591 -115637529 - ORR1A2 LTR MaLR 0 327 1 7 890 564 15 0 0 chr4 39992901 39992966 -115637154 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 890 1089 179 14 42 chr4 39994089 39994305 -115635815 - B3 SINE B2 -5 211 2 7 890 247 252 167 69 chr4 39995737 39995908 -115634212 + MIR3 SINE MIR 15 199 -63 7 890 198 0 0 0 chr4 39998288 39998310 -115631810 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 7 890 327 258 10 67 chr4 39998855 39998959 -115631161 + PB1D7 SINE Alu 4 101 -19 7 890 685 243 0 7 chr4 39999240 39999393 -115630727 + RSINE1 SINE B4 4 155 -10 7 890 279 0 0 0 chr4 39999463 39999494 -115630626 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 890 454 162 132 33 chr4 39999586 39999663 -115630457 + RMER17C LTR ERVK 1 90 -320 7 890 573 55 0 0 chr4 39999663 39999736 -115630384 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 890 922 146 30 22 chr4 39999736 39999924 -115630196 + RMER17C LTR ERVK 91 399 -11 7 890 287 304 7 21 chr4 40000141 40000282 -115629838 + L1M4c LINE L1 1273 1411 -4973 1 890 266 296 0 58 chr4 40000417 40000521 -115629599 + L1M4c LINE L1 1667 1764 -4805 1 890 915 242 31 59 chr4 40000562 40000848 -115629272 - RMER13B LTR ERVK -9 899 622 2 890 1206 172 50 50 chr4 40000918 40001200 -115628920 - RMER13B LTR ERVK -271 637 356 2 890 1964 100 3 70 chr4 40001204 40001560 -115628560 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 890 59609 9 1 7 chr4 40001560 40008078 -115622042 - IAPEz-int LTR ERVK 0 6481 9 3 890 2132 102 3 70 chr4 40008078 40008437 -115621683 - IAPLTR1a_Mm LTR ERVK -2 335 1 3 890 1746 162 42 58 chr4 40008444 40008804 -115621316 - RMER13B LTR ERVK -554 354 1 2 890 768 266 64 40 chr4 40008912 40009367 -115620753 + L1M4c LINE L1 2175 2646 -3733 1 890 1467 184 68 58 chr4 40009368 40009808 -115620312 + RMER16 LTR ERVK 1 533 0 4 890 488 266 52 7 chr4 40009808 40009963 -115620157 + L1M4c LINE L1 2639 2800 -3579 1 890 462 356 77 27 chr4 40010068 40010290 -115619830 + LTR40a LTR ERVL 287 519 0 5 890 858 197 87 10 chr4 40013241 40013436 -115616684 + B4A SINE B4 2 211 -81 6 890 351 0 0 0 chr4 40013437 40013476 -115616644 + (CAT)n Simple_repeat Simple_repeat 1 39 0 7 890 239 0 0 31 chr4 40013476 40013508 -115616612 + (TAA)n Simple_repeat Simple_repeat 2 32 0 8 890 596 284 168 50 chr4 40013555 40013996 -115616124 + MLT1D LTR MaLR 13 505 0 9 890 350 287 62 14 chr4 40014390 40014535 -115615585 + B4A SINE B4 2 153 -139 1 890 270 327 23 102 chr4 40014762 40014885 -115615235 - Tigger5 DNA MER2_type -2224 182 57 1 890 1734 207 83 2 chr4 40014885 40015292 -115614828 + BGLII_B LTR ERVK 2 441 0 1 890 270 327 23 102 chr4 40015292 40015345 -115614775 - Tigger5 DNA MER2_type -2350 56 20 1 890 22 56 0 0 chr4 40015620 40015656 -115614464 + AT_rich Low_complexity Low_complexity 1 36 0 1 890 207 100 0 0 chr4 40016980 40017010 -115613110 + (A)n Simple_repeat Simple_repeat 1 30 0 1 890 30 0 0 0 chr4 40019270 40019300 -115610820 + AT_rich Low_complexity Low_complexity 1 30 0 1 890 802 348 93 14 chr4 40019469 40019900 -115610220 - MER90a LTR ERV1 -63 551 87 1 890 305 289 66 32 chr4 40020730 40020884 -115609236 + MTEa LTR MaLR 193 355 -24 1 890 288 244 11 32 chr4 40022814 40022907 -115607213 - MTEa LTR MaLR 0 379 289 1 890 1039 220 61 127 chr4 40023246 40023746 -115606374 - RLTR12B LTR ERVK -42 486 1 1 890 525 271 11 93 chr4 40023944 40024127 -115605993 + MTE2b LTR MaLR 1 168 -211 2 890 746 265 117 8 chr4 40024149 40024396 -115605724 + B4A SINE B4 4 277 -15 2 890 468 0 0 0 chr4 40024396 40024448 -115605672 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 890 943 197 52 0 chr4 40024614 40024807 -115605313 - MTD LTR MaLR -21 398 196 2 890 37 81 0 0 chr4 40024813 40024899 -115605221 + AT_rich Low_complexity Low_complexity 1 86 0 2 890 3775 70 4 4 chr4 40025879 40026370 -115603750 - L1_Mus2 LINE L1 0 6566 6076 2 890 634 291 40 0 chr4 40026375 40026550 -115603570 - MTD LTR MaLR -237 182 1 2 890 335 245 74 11 chr4 40026550 40026645 -115603475 + MTE2b LTR MaLR 194 312 -67 2 890 549 0 0 0 chr4 40026645 40026706 -115603414 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 2 890 328 268 132 16 chr4 40026706 40026738 -115603382 + MTE2b LTR MaLR 313 360 -19 2 890 223 349 73 49 chr4 40027150 40027397 -115602723 - L2c LINE L2 -74 3313 3061 2 890 262 310 87 17 chr4 40027407 40027522 -115602598 - MER5A DNA MER1_type -33 156 34 2 890 241 319 156 24 chr4 40027891 40028058 -115602062 - LTR84b LTR ERVL -542 219 31 2 890 2278 163 131 4 chr4 40028486 40028973 -115601147 + RMER15 LTR ERVL 27 575 0 3 890 326 366 99 0 chr4 40029173 40029364 -115600756 - MIRb SINE MIR -27 241 32 3 890 736 218 48 38 chr4 40029370 40029556 -115600564 + ID_B1 SINE B4 18 205 -19 3 890 909 262 120 18 chr4 40029732 40030066 -115600054 - MTEb LTR MaLR 0 379 12 3 890 36201 44 0 3 chr4 40030138 40035376 -115594744 + L1Md_T LINE L1 271 5589 -297 3 890 8676 29 0 0 chr4 40035376 40036371 -115593749 + L1Md_T LINE L1 5590 6584 -1 3 890 471 100 0 0 chr4 40036524 40036594 -115593526 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 890 336 24 0 0 chr4 40036775 40036816 -115593304 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 3 890 214 182 0 0 chr4 40038368 40038412 -115591708 + T-rich Low_complexity Low_complexity 1 44 0 3 890 266 219 46 15 chr4 40038432 40038497 -115591623 - FLAM_A SINE Alu -221 74 8 3 890 793 162 0 27 chr4 40038573 40038757 -115591363 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 890 330 292 0 0 chr4 40038791 40038952 -115591168 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 890 790 210 35 74 chr4 40039394 40039625 -115590495 + Lx8 LINE L1 6735 6956 -517 4 890 234 62 0 0 chr4 40039633 40039665 -115590455 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 890 609 207 103 32 chr4 40039698 40039853 -115590267 + Lx8 LINE L1 6971 7136 -337 4 890 1080 58 0 21 chr4 40041507 40041649 -115588471 - B1_Mus1 SINE Alu -9 139 1 4 890 206 227 0 0 chr4 40041925 40041969 -115588151 + CT-rich Low_complexity Low_complexity 3 46 0 4 890 366 263 239 46 chr4 40042060 40042373 -115587747 - MTD LTR MaLR -9 370 26 4 890 352 308 44 29 chr4 40042420 40042557 -115587563 - B3 SINE B2 0 216 78 4 890 279 0 0 0 chr4 40042784 40042815 -115587305 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 890 297 0 0 0 chr4 40042815 40042847 -115587273 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 890 4639 239 44 6 chr4 40042878 40043932 -115586188 + Lx8 LINE L1 6172 7265 -208 4 890 200 246 35 0 chr4 40043966 40044023 -115586097 + GA-rich Low_complexity Low_complexity 5 63 0 4 890 331 235 86 29 chr4 40044123 40044228 -115585892 + L1M4 LINE L1 90 200 -6342 5 890 268 283 10 42 chr4 40044374 40044470 -115585650 + L1M4 LINE L1 385 477 -6065 5 890 721 305 43 20 chr4 40044482 40044786 -115585334 + L1M4 LINE L1 542 852 -5690 5 890 323 271 9 27 chr4 40045532 40045642 -115584478 + L1M4 LINE L1 5393 5500 -1144 5 890 290 287 44 44 chr4 40045998 40046133 -115583987 + RMER15 LTR ERVL 434 568 -7 5 890 894 231 232 9 chr4 40046186 40046297 -115583823 + MTD LTR MaLR 3 125 -294 5 890 291 54 0 0 chr4 40046297 40046334 -115583786 + (TAG)n Simple_repeat Simple_repeat 2 38 0 5 890 894 231 232 9 chr4 40046334 40046563 -115583557 + MTD LTR MaLR 126 419 0 5 890 231 61 0 0 chr4 40046575 40046608 -115583512 + (A)n Simple_repeat Simple_repeat 1 33 0 5 890 571 330 12 62 chr4 40047215 40047380 -115582740 + MLT2B3 LTR ERVL 220 374 -180 5 890 459 92 0 0 chr4 40047380 40047445 -115582675 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 890 571 330 12 62 chr4 40047445 40047521 -115582599 + MLT2B3 LTR ERVL 375 449 -105 5 890 585 260 164 32 chr4 40047592 40047965 -115582155 + L1ME2 LINE L1 5550 5971 -193 5 890 329 297 20 0 chr4 40047996 40048097 -115582023 + MLT1G1 LTR MaLR 476 578 -1 5 890 311 268 15 61 chr4 40049457 40049532 -115580588 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 890 1459 197 114 6 chr4 40049532 40049864 -115580256 - ORR1D1 LTR MaLR -2 372 5 6 890 311 268 15 61 chr4 40049864 40049919 -115580201 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 890 932 286 68 0 chr4 40049933 40050199 -115579921 - B4A SINE B4 -8 284 1 6 890 22 0 0 0 chr4 40050761 40050783 -115579337 + AT_rich Low_complexity Low_complexity 1 22 0 6 890 1320 244 81 22 chr4 40051437 40051794 -115578326 - MTEa LTR MaLR -1 378 1 6 890 200 325 112 88 chr4 40051903 40052028 -115578092 + L2b LINE L2 3222 3349 -26 6 890 459 100 0 0 chr4 40053785 40053855 -115576265 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 890 248 217 0 0 chr4 40053855 40053915 -115576205 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 890 216 0 0 0 chr4 40054054 40054078 -115576042 + (ATTG)n Simple_repeat Simple_repeat 3 26 0 6 890 438 228 69 0 chr4 40054113 40054214 -115575906 - RSINE1 SINE B4 -56 109 2 6 890 3387 196 119 17 chr4 40055313 40056078 -115574042 - Lx5 LINE L1 -2 7048 6206 7 890 550 135 31 0 chr4 40056141 40056237 -115573883 - Lx4A LINE L1 -833 6225 6127 7 890 2940 90 47 14 chr4 40056235 40056664 -115573456 + Lx4A LINE L1 5705 6147 -911 7 890 471 261 120 6 chr4 40057282 40057440 -115572680 + Ricksha_c DNA MuDR 703 878 -1170 7 890 31 0 0 0 chr4 40058926 40058957 -115571163 + AT_rich Low_complexity Low_complexity 1 31 0 7 890 1018 266 21 42 chr4 40059178 40059464 -115570656 + B4A SINE B4 9 288 -4 7 890 387 0 0 0 chr4 40059573 40059616 -115570504 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 890 555 96 0 0 chr4 40060075 40060158 -115569962 + (CATA)n Simple_repeat Simple_repeat 3 85 0 7 890 372 71 0 0 chr4 40060492 40060548 -115569572 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 7 890 354 249 78 4 chr4 40061124 40061235 -115568885 + B3A SINE B2 2 126 -69 7 890 450 0 0 0 chr4 40061265 40061315 -115568805 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 890 300 242 155 8 chr4 40061358 40061487 -115568633 + B1F2 SINE Alu 1 148 -1 8 890 1570 312 104 38 chr4 40062002 40062928 -115567192 + L1MC1 LINE L1 15 1001 -5507 8 890 984 224 171 35 chr4 40062944 40062994 -115567126 - Lx8 LINE L1 -2 7471 7413 8 890 576 65 0 0 chr4 40062994 40063071 -115567049 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 890 984 224 171 35 chr4 40063071 40063153 -115566967 - Lx8 LINE L1 -61 7412 7329 8 890 1649 147 199 3 chr4 40063153 40063460 -115566660 + ORR1B2 LTR MaLR 1 367 0 8 890 984 224 171 35 chr4 40063460 40063641 -115566479 - Lx8 LINE L1 -145 7328 7115 8 890 1924 222 161 41 chr4 40064305 40065142 -115564978 + L1MC1 LINE L1 4512 5449 -872 8 890 339 348 12 5 chr4 40065162 40065298 -115564822 + Lx6 LINE L1 6608 6754 -942 8 890 474 167 0 62 chr4 40065310 40065406 -115564714 - MT2B LTR ERVL -511 90 1 8 890 2068 249 53 21 chr4 40065406 40065968 -115564152 + Lx6 LINE L1 6483 7434 -26 8 890 1695 276 171 19 chr4 40066099 40066971 -115563149 + L1MC1 LINE L1 5486 6489 -19 8 890 334 328 142 38 chr4 40067281 40067880 -115562240 - L2 LINE L2 -556 2863 2203 8 890 2203 60 12 30 chr4 40068935 40069264 -115560856 - MTB LTR MaLR 0 400 78 8 890 1162 57 0 25 chr4 40069273 40069436 -115560684 + ORR1A1 LTR MaLR 188 346 0 9 890 11111 55 83 6 chr4 40069436 40071100 -115559020 + ORR1A1-int LTR MaLR 1 1792 0 9 890 2147 53 0 0 chr4 40071100 40071385 -115558735 + ORR1A1 LTR MaLR 1 285 -61 9 890 303 28 0 0 chr4 40071385 40071421 -115558699 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 890 519 52 130 0 chr4 40071421 40071498 -115558622 - MTB LTR MaLR -320 87 1 8 890 430 235 28 77 chr4 40071540 40071683 -115558437 - Lx7 LINE L1 -2 7694 7559 9 890 183 80 0 0 chr4 40071684 40071709 -115558411 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 890 1784 196 46 6 chr4 40071712 40072041 -115558079 - Lx7 LINE L1 -280 7416 7075 9 890 2336 186 31 0 chr4 40072047 40072525 -115557595 - Lx7 LINE L1 -790 6906 6376 9 890 1479 236 68 10 chr4 40072617 40073011 -115557109 + MTD LTR MaLR 1 417 -2 9 890 504 194 13 25 chr4 40073013 40073152 -115556968 + MTD-int LTR MaLR 1 127 -971 9 890 2236 150 49 5 chr4 40073152 40073520 -115556600 + ORR1C2 LTR MaLR 1 384 0 9 890 192 200 0 0 chr4 40073634 40073674 -115556446 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 890 5827 61 0 0 chr4 40074391 40075113 -115555007 + L1Md_F2 LINE L1 5861 6582 0 9 890 229 234 94 0 chr4 40075113 40075177 -115554943 + L1_Mur2 LINE L1 5288 5357 -520 9 890 294 29 0 0 chr4 40075178 40075213 -115554907 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 890 278 374 0 0 chr4 40075666 40075749 -115554371 - ID4_ SINE ID 0 83 1 1 890 1571 241 112 36 chr4 40075750 40076447 -115553673 + L1MA8 LINE L1 5538 6287 -4 1 890 744 291 52 93 chr4 40076633 40077096 -115553024 + L1MC5 LINE L1 6665 7108 -853 1 890 415 279 184 0 chr4 40077123 40077324 -115552796 - LTR40c LTR ERVL -19 446 209 1 890 862 294 68 16 chr4 40077341 40077724 -115552396 + MLT1D LTR MaLR 83 485 -20 1 890 22 0 0 0 chr4 40077728 40077750 -115552370 + AT_rich Low_complexity Low_complexity 1 22 0 1 890 498 252 15 0 chr4 40077931 40078062 -115552058 + MTD LTR MaLR 6 138 -281 1 890 7142 123 21 25 chr4 40078062 40078580 -115551540 + RMER12B LTR ERVK 1 512 -892 1 890 1352 60 42 26 chr4 40078580 40078770 -115551350 + B2_Mm2 SINE B2 2 194 -1 1 890 7142 123 21 25 chr4 40078770 40079461 -115550659 + RMER12B LTR ERVK 513 1200 -204 1 890 441 0 0 0 chr4 40079461 40079510 -115550610 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 890 7142 123 21 25 chr4 40079510 40079565 -115550555 + RMER12B LTR ERVK 1201 1261 -143 1 890 342 230 52 138 chr4 40079568 40079684 -115550436 + RMER12B LTR ERVK 1155 1260 -144 1 890 492 48 0 0 chr4 40079717 40079780 -115550340 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1 890 293 203 0 0 chr4 40079781 40079840 -115550280 + RMER12B LTR ERVK 1157 1215 -189 1 890 713 224 144 34 chr4 40079915 40080123 -115549997 + MTD LTR MaLR 133 363 -56 1 890 313 245 71 0 chr4 40080275 40080373 -115549747 + L1MEg LINE L1 1253 1357 -4727 1 890 634 251 117 5 chr4 40080373 40080561 -115549559 + ID_B1 SINE B4 1 209 -15 1 890 34 72 0 0 chr4 40081210 40081279 -115548841 + AT_rich Low_complexity Low_complexity 1 69 0 1 890 506 266 91 34 chr4 40081279 40081454 -115548666 - B3A SINE B2 -13 185 1 1 890 201 138 0 0 chr4 40081462 40081491 -115548629 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1 890 2536 103 17 51 chr4 40081492 40081901 -115548219 - Lx3A LINE L1 0 6981 6587 1 890 279 0 0 0 chr4 40082326 40082357 -115547763 + (A)n Simple_repeat Simple_repeat 1 31 0 1 890 3566 20 2 0 chr4 40082422 40082817 -115547303 + MTA_Mm LTR MaLR 1 396 0 1 890 232 319 71 0 chr4 40083110 40083223 -115546897 + MIRb SINE MIR 21 141 -127 1 890 1985 166 44 25 chr4 40084448 40084652 -115545468 + MTD LTR MaLR 4 207 -212 1 890 1294 120 15 20 chr4 40084652 40084848 -115545272 + B2_Mm2 SINE B2 1 195 0 1 890 486 0 0 0 chr4 40084848 40084902 -115545218 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 890 1985 166 44 25 chr4 40084902 40085104 -115545016 + MTD LTR MaLR 208 418 -1 1 890 2537 68 3 58 chr4 40085668 40086014 -115544106 - ORR1A2 LTR MaLR 0 327 1 1 890 2218 214 80 8 chr4 40087080 40087580 -115542540 - RMER15 LTR ERVL -18 557 22 1 890 296 338 29 14 chr4 40089140 40089278 -115540842 + ID_B1 SINE B4 78 217 -7 1 890 1918 141 87 16 chr4 40089438 40089819 -115540301 + MTC LTR MaLR 6 413 -8 1 890 249 215 348 0 chr4 40091158 40091293 -115538827 - Charlie1b DNA MER1_type -216 307 126 1 890 588 272 24 36 chr4 40092706 40092874 -115537246 + MER63A DNA AcHobo 45 210 0 1 890 541 155 9 9 chr4 40092903 40093014 -115537106 + CT-rich Low_complexity Low_complexity 2 112 0 1 890 360 0 0 0 chr4 40093140 40093180 -115536940 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 890 421 239 36 27 chr4 40093200 40093312 -115536808 - MER58A DNA MER1_type -75 149 37 1 890 1690 140 174 21 chr4 40094530 40094858 -115535262 - ORR1C1 LTR MaLR 0 378 1 1 890 369 0 0 0 chr4 40095167 40095208 -115534912 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 890 291 54 0 0 chr4 40095941 40095978 -115534142 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 1 890 995 220 0 27 chr4 40096307 40096527 -115533593 + B3 SINE B2 1 214 -2 1 890 424 246 9 17 chr4 40098970 40099086 -115531034 + PB1D10 SINE Alu 1 115 -2 1 890 207 0 0 0 chr4 40099091 40099114 -115531006 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 890 3010 183 166 5 chr4 40099116 40099731 -115530389 + RMER6D LTR ERVK 3 716 -4 1 890 312 200 0 0 chr4 40099735 40099825 -115530295 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 890 477 0 0 0 chr4 40101431 40101484 -115528636 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 890 745 209 0 0 chr4 40101504 40101643 -115528477 - B1_Mur2 SINE Alu 0 149 11 1 890 817 135 13 7 chr4 40101649 40101798 -115528322 + CT-rich Low_complexity Low_complexity 2 151 0 1 890 225 0 0 0 chr4 40101801 40101826 -115528294 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 890 454 257 62 28 chr4 40101832 40101976 -115528144 - B3 SINE B2 -67 149 1 1 890 311 44 22 0 chr4 40102960 40103005 -115527115 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 1 890 2667 223 96 47 chr4 40105486 40105894 -115524226 - RCHARR1 DNA MER1_type 0 974 557 1 890 907 117 153 0 chr4 40105894 40106057 -115524063 + B2_Mm2 SINE B2 1 188 -7 1 890 2667 223 96 47 chr4 40106057 40106482 -115523638 - RCHARR1 DNA MER1_type -418 556 100 1 890 369 0 0 0 chr4 40107040 40107081 -115523039 + (T)n Simple_repeat Simple_repeat 1 41 0 1 890 189 0 0 0 chr4 40107310 40107331 -115522789 + (T)n Simple_repeat Simple_repeat 1 21 0 1 890 621 221 28 21 chr4 40107444 40107587 -115522533 + B1_Mur2 SINE Alu 5 148 -1 1 111 1279 200 103 32 chr4 40107703 40108044 -115522076 - ORR1D2 LTR MaLR -5 365 1 1 891 1468 203 93 25 chr4 40108044 40108396 -115521724 + MTD LTR MaLR 44 419 0 1 891 483 246 36 22 chr4 40108510 40108647 -115521473 + B1F1 SINE Alu 1 139 -10 1 891 192 40 0 0 chr4 40108771 40108796 -115521324 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 891 1771 133 93 3 chr4 40108899 40109209 -115520911 - ORR1A1 LTR MaLR -8 338 1 1 891 982 184 68 24 chr4 40109668 40109874 -115520246 + B3 SINE B2 2 216 0 1 891 300 216 81 0 chr4 40110669 40110743 -115519377 - Lx8 LINE L1 -2 7471 7392 1 891 189 0 0 0 chr4 40111820 40111841 -115518279 + (CACCT)n Simple_repeat Simple_repeat 1 21 0 1 891 399 100 0 0 chr4 40111838 40111908 -115518212 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 891 729 291 98 59 chr4 40112384 40113111 -115517009 - L1MA5 LINE L1 -370 5930 5100 1 891 985 200 196 37 chr4 40113145 40113472 -115516648 + MTE2b LTR MaLR 1 379 0 1 891 786 272 33 7 chr4 40113476 40113750 -115516370 - L1_Mur3 LINE L1 -1224 4656 4376 1 891 321 263 28 112 chr4 40114314 40114421 -115515699 + RSINE1 SINE B4 3 100 -65 1 891 261 204 0 36 chr4 40114491 40114547 -115515573 + RSINE1 SINE B4 112 165 0 1 891 307 221 217 19 chr4 40116581 40116687 -115513433 + B1F2 SINE Alu 23 149 0 1 891 1697 16 0 0 chr4 40116736 40116922 -115513198 - B2_Mm1a SINE B2 -7 186 1 1 891 610 276 7 65 chr4 40117198 40117381 -115512739 + B3A SINE B2 45 198 0 1 891 2122 170 68 3 chr4 40117470 40117854 -115512266 + MTC LTR MaLR 5 413 -8 1 891 1048 168 137 0 chr4 40118456 40118653 -115511467 + URR1A DNA MER1_type 1 224 -2 1 891 254 237 235 10 chr4 40119299 40119333 -115510787 + PB1D7 SINE Alu 1 120 0 1 891 255 250 31 0 chr4 40119333 40119397 -115510723 + ID_B1 SINE B4 159 224 0 1 891 204 97 0 0 chr4 40119397 40119428 -115510692 + (A)n Simple_repeat Simple_repeat 1 31 0 1 891 234 0 0 0 chr4 40120649 40120675 -115509445 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 891 242 239 0 0 chr4 40120690 40120736 -115509384 - MER58C DNA MER1_type -36 179 134 1 891 787 276 183 59 chr4 40120949 40121408 -115508712 - RMER5 LTR ERV1 -10 524 9 1 891 225 315 128 19 chr4 40121805 40121949 -115508171 + MIR SINE MIR 5 143 -125 1 891 208 348 25 50 chr4 40121959 40122080 -115508040 + MIRb SINE MIR 123 240 -28 1 891 248 283 0 0 chr4 40123184 40123237 -115506883 + L2a LINE L2 3322 3374 -52 1 891 28 48 0 0 chr4 40124471 40124513 -115505607 + AT_rich Low_complexity Low_complexity 1 42 0 1 891 246 289 178 24 chr4 40124520 40124733 -115505387 - L1MD3 LINE L1 -20 7975 7730 1 891 350 308 21 111 chr4 40125445 40125679 -115504441 + MIRb SINE MIR 35 247 -21 1 891 1271 27 7 0 chr4 40126320 40126467 -115503653 - B1_Mus1 SINE Alu 0 148 1 1 891 222 174 22 0 chr4 40126489 40126535 -115503585 - B4 SINE B4 -245 47 1 1 891 333 212 202 48 chr4 40129515 40129619 -115500501 - B1_Mur2 SINE Alu 0 120 1 1 891 237 319 32 21 chr4 40129619 40129663 -115500457 - B4 SINE B4 -207 85 41 1 891 285 282 13 0 chr4 40130827 40130905 -115499215 + MIR SINE MIR 79 157 -105 1 891 2340 142 121 11 chr4 40130925 40131381 -115498739 + RLTR28 LTR ERVL 1 506 -18 1 891 268 203 14 42 chr4 40131396 40131468 -115498652 + MIR SINE MIR 187 256 -6 1 891 253 292 14 27 chr4 40132160 40132234 -115497886 + B1_Mur3 SINE Alu 5 77 -72 1 891 532 311 107 35 chr4 40132581 40132955 -115497165 - MER82 DNA MER2_type 0 653 214 1 891 358 352 8 0 chr4 40132967 40133089 -115497031 - MER2 DNA MER2_type -1 344 222 1 891 314 320 144 0 chr4 40133132 40133257 -115496863 - MER2 DNA MER2_type -202 143 1 1 891 22 0 0 0 chr4 40133803 40133825 -115496295 + AT_rich Low_complexity Low_complexity 1 22 0 1 891 628 242 0 39 chr4 40133891 40134046 -115496074 + B1_Mur2 SINE Alu 1 149 0 1 891 694 278 112 42 chr4 40134383 40134695 -115495425 + Lx8 LINE L1 7140 7473 0 1 891 201 74 0 0 chr4 40135357 40135384 -115494736 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 891 377 212 103 58 chr4 40135411 40135566 -115494554 - RSINE1 SINE B4 0 165 4 1 891 903 194 100 0 chr4 40135586 40135766 -115494354 - B3 SINE B2 -18 198 1 1 891 245 174 0 21 chr4 40138692 40138739 -115491381 - MTD LTR MaLR -373 46 1 1 891 735 134 0 0 chr4 40138785 40138904 -115491216 + (GA)n Simple_repeat Simple_repeat 2 120 0 1 891 2579 107 102 2 chr4 40139111 40139523 -115490597 - RLTR11B LTR ERVK 0 453 1 1 891 305 274 48 19 chr4 40139967 40140071 -115490049 - RLTR23 LTR ERV1 0 430 324 2 891 602 178 0 8 chr4 40141209 40141339 -115488781 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 891 1091 90 7 7 chr4 40141556 40141702 -115488418 + B1_Mus1 SINE Alu 1 146 -2 2 891 229 250 0 0 chr4 40142206 40142254 -115487866 - RSINE1 SINE B4 -114 51 4 2 891 340 173 0 0 chr4 40142334 40142386 -115487734 - MER5B DNA MER1_type -108 70 19 2 891 390 21 0 0 chr4 40142441 40142488 -115487632 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 891 684 67 0 0 chr4 40142804 40142894 -115487226 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 891 411 262 69 59 chr4 40143829 40144032 -115486088 + ORR1D2 LTR MaLR 6 210 -160 2 891 390 80 0 0 chr4 40144051 40144101 -115486019 + ORR1D2 LTR MaLR 314 363 -7 2 891 284 120 20 0 chr4 40145820 40145870 -115484250 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2 891 234 62 0 0 chr4 40145870 40145902 -115484218 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 891 1108 78 7 0 chr4 40145906 40146048 -115484072 - B1_Mus1 SINE Alu -5 143 1 2 891 1679 284 130 30 chr4 40146060 40147646 -115482474 - L1MB1 LINE L1 0 6993 5232 2 891 312 216 130 43 chr4 40147658 40147750 -115482370 - L1MB1 LINE L1 -3221 3624 3525 2 891 333 281 6 0 chr4 40148209 40148301 -115481819 - L1MB1 LINE L1 -4305 2544 2466 2 891 316 260 156 0 chr4 40148309 40148405 -115481715 + MLT1A LTR MaLR 263 373 -1 2 891 300 53 0 0 chr4 40148749 40148787 -115481333 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 891 350 342 68 37 chr4 40148836 40149027 -115481093 - MLT1K LTR MaLR 0 595 399 2 891 1091 244 59 26 chr4 40149216 40149523 -115480597 - ORR1E LTR MaLR 0 359 43 2 891 716 203 27 58 chr4 40150616 40150686 -115479434 + B2_Mm2 SINE B2 2 71 -124 2 891 216 0 0 0 chr4 40150686 40150710 -115479410 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 891 716 203 27 58 chr4 40150710 40150827 -115479293 + B2_Mm2 SINE B2 72 183 -12 2 891 1123 82 0 7 chr4 40150969 40151117 -115479003 + B1_Mus2 SINE Alu 1 147 0 2 891 619 162 128 23 chr4 40151711 40151844 -115478276 + B1_Mur3 SINE Alu 1 147 -2 2 891 501 169 186 0 chr4 40151920 40152038 -115478082 + B1_Mur1 SINE Alu 1 140 -9 2 891 1177 120 98 5 chr4 40153521 40153714 -115476406 + Lx LINE L1 6287 6497 -157 2 891 524 246 0 50 chr4 40154025 40154145 -115475975 + PB1D9 SINE Alu 7 120 0 2 891 263 297 119 0 chr4 40154506 40154624 -115475496 - L1MD3 LINE L1 -20 7975 7844 2 891 399 240 39 20 chr4 40154740 40154842 -115475278 + PB1D10 SINE Alu 5 108 -9 2 891 442 331 99 18 chr4 40154846 40155178 -115474942 - L1MA5 LINE L1 -22 6278 5920 2 891 180 77 0 0 chr4 40155183 40155209 -115474911 + (T)n Simple_repeat Simple_repeat 1 26 0 2 891 1203 68 0 0 chr4 40155209 40155356 -115474764 - B1_Mus1 SINE Alu 0 148 2 2 891 230 56 28 0 chr4 40155696 40155732 -115474388 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 891 225 0 0 0 chr4 40157170 40157195 -115472925 + (A)n Simple_repeat Simple_repeat 1 25 0 2 891 230 237 0 48 chr4 40157220 40157282 -115472838 - MIR SINE MIR -92 170 112 2 891 320 250 0 0 chr4 40157697 40157781 -115472339 + (TGGA)n Simple_repeat Simple_repeat 3 86 0 2 891 1085 80 0 0 chr4 40158262 40158400 -115471720 + B1_Mus1 SINE Alu 2 139 -9 2 891 237 265 0 0 chr4 40158457 40158506 -115471614 + MLT2F LTR ERVL 513 561 -2 2 891 207 0 0 0 chr4 40159067 40159090 -115471030 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 891 1744 16 0 0 chr4 40159132 40159324 -115470796 - B2_Mm1t SINE B2 0 193 2 2 891 500 257 88 0 chr4 40159411 40159547 -115470573 - B4 SINE B4 -143 149 2 2 891 344 226 68 17 chr4 40159561 40159678 -115470442 + L1MD LINE L1 4367 4489 -1657 2 891 1065 168 21 21 chr4 40159678 40159867 -115470253 + B3 SINE B2 1 189 -27 2 891 355 301 62 57 chr4 40159948 40160274 -115469846 + MLT1F1 LTR MaLR 117 553 -16 2 891 298 257 108 0 chr4 40160357 40160431 -115469689 - ID4_ SINE ID 0 83 2 2 891 238 224 269 0 chr4 40160665 40160732 -115469388 + L1M5 LINE L1 4827 4911 -1235 2 891 1477 57 5 15 chr4 40161144 40161339 -115468781 + B2_Mm1t SINE B2 1 193 0 2 891 243 0 0 0 chr4 40161397 40161424 -115468696 + (A)n Simple_repeat Simple_repeat 1 27 0 2 891 912 147 14 14 chr4 40161580 40161725 -115468395 - B1_Mur4 SINE Alu 0 150 6 2 891 1762 289 148 21 chr4 40161831 40162607 -115467513 + MER63C DNA AcHobo 3 877 -53 2 891 1007 102 29 0 chr4 40162607 40162744 -115467376 + B1_Mm SINE Alu 1 141 -6 2 891 799 48 24 16 chr4 40162754 40162881 -115467239 + (GAGAA)n Simple_repeat Simple_repeat 3 130 0 2 891 657 69 0 0 chr4 40162885 40162972 -115467148 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 2 891 411 56 0 0 chr4 40164638 40164692 -115465428 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 891 23 0 0 0 chr4 40164792 40164815 -115465305 + AT_rich Low_complexity Low_complexity 1 23 0 2 891 1478 63 5 26 chr4 40164824 40165019 -115465101 + B2_Mm1a SINE B2 3 193 0 2 891 720 244 69 6 chr4 40165046 40165219 -115464901 + B3A SINE B2 1 184 -14 2 891 188 163 0 23 chr4 40165387 40165431 -115464689 + GA-rich Low_complexity Low_complexity 4 46 0 2 891 320 158 244 0 chr4 40165928 40166010 -115464110 - B1F1 SINE Alu -47 102 1 2 891 577 118 104 38 chr4 40166105 40166211 -115463909 + B1_Mur3 SINE Alu 37 149 0 2 891 207 0 0 0 chr4 40166629 40166652 -115463468 + (GGA)n Simple_repeat Simple_repeat 1 23 0 2 891 573 245 21 28 chr4 40166878 40167021 -115463099 + B1F2 SINE Alu 1 142 -7 2 891 748 201 183 38 chr4 40167023 40167209 -115462911 + B3 SINE B2 4 216 0 2 891 201 264 28 0 chr4 40167216 40167288 -115462832 + GA-rich Low_complexity Low_complexity 3 76 0 2 891 222 37 0 0 chr4 40167995 40168022 -115462098 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2 891 681 38 18 45 chr4 40168024 40168135 -115461985 - L1_Mus3 LINE L1 -15 6623 6516 2 891 203 279 112 24 chr4 40170259 40170366 -115459754 + L2a LINE L2 3290 3408 -18 2 891 900 292 85 3 chr4 40170366 40170685 -115459435 + MER2 DNA MER2_type 1 345 0 2 891 203 279 112 24 chr4 40170685 40170702 -115459418 + L2a LINE L2 3409 3425 -1 2 891 1642 42 0 0 chr4 40171549 40171740 -115458380 + B2_Mm1a SINE B2 2 192 -1 2 891 324 248 107 15 chr4 40171758 40171889 -115458231 + B1_Mur3 SINE Alu 1 143 -6 2 891 231 114 0 0 chr4 40172237 40172272 -115457848 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 2 891 495 0 0 0 chr4 40172876 40172931 -115457189 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 891 1020 130 9 139 chr4 40172947 40173170 -115456950 - B2_Mm2 SINE B2 -1 194 1 2 891 228 135 0 0 chr4 40173420 40173457 -115456663 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 2 891 952 49 0 0 chr4 40173845 40173968 -115456152 - B1_Mus2 SINE Alu -10 137 15 2 891 376 318 68 0 chr4 40174108 40174256 -115455864 - RSINE1 SINE B4 -6 159 2 2 891 1266 41 0 0 chr4 40175647 40175793 -115454327 + B1_Mus2 SINE Alu 2 147 0 2 891 368 63 12 60 chr4 40175798 40175868 -115454252 + (CAAAAA)n Simple_repeat Simple_repeat 4 71 0 2 891 1388 63 15 31 chr4 40175868 40176064 -115454056 + B2_Mm1a SINE B2 1 193 0 2 891 368 63 12 60 chr4 40176064 40176077 -115454043 + (CAAAAA)n Simple_repeat Simple_repeat 6 17 0 2 891 210 37 0 0 chr4 40176117 40176144 -115453976 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 891 956 213 20 5 chr4 40177438 40177641 -115452479 - B3 SINE B2 -2 214 9 2 891 447 279 203 8 chr4 40177994 40178235 -115451885 + B4A SINE B4 2 289 -3 2 891 263 277 67 0 chr4 40178269 40178371 -115451749 - ORR1E LTR MaLR -255 115 1 2 891 370 255 212 72 chr4 40178390 40178682 -115451438 - L1M3 LINE L1 -1193 4947 4615 2 891 398 50 0 0 chr4 40178775 40178835 -115451285 - B2_Mm1a SINE B2 -7 186 127 2 891 1014 99 7 0 chr4 40178870 40179022 -115451098 - B2_Mm1t SINE B2 -14 179 27 2 891 604 188 77 0 chr4 40179029 40179146 -115450974 - B1_Mus2 SINE Alu -21 126 1 2 891 1432 58 0 45 chr4 40179171 40179210 -115450910 - B2_Mm1a SINE B2 -2 191 161 2 891 207 0 0 0 chr4 40179210 40179233 -115450887 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 891 1432 58 0 45 chr4 40179233 40179393 -115450727 - B2_Mm1a SINE B2 -33 160 1 2 891 236 344 45 26 chr4 40179398 40179553 -115450567 + L1M3 LINE L1 4372 4529 -1611 2 891 318 267 79 34 chr4 40179619 40179791 -115450329 - L1M3 LINE L1 -1725 4421 4240 2 891 763 72 0 0 chr4 40179791 40179902 -115450218 + B2_Mm2 SINE B2 1 111 -84 2 891 26 0 0 0 chr4 40179916 40179942 -115450178 + AT_rich Low_complexity Low_complexity 1 26 0 2 891 1685 70 37 11 chr4 40180273 40180546 -115449574 + BGLII LTR ERVK 1 280 -141 2 891 1054 43 0 0 chr4 40180544 40180685 -115449435 + B1_Mm SINE Alu 7 147 0 2 891 183 80 0 0 chr4 40180689 40180714 -115449406 + (A)n Simple_repeat Simple_repeat 1 25 0 2 891 854 114 0 0 chr4 40180717 40180849 -115449271 + BGLII LTR ERVK 290 421 0 2 891 509 234 101 0 chr4 40180854 40181012 -115449108 + B3A SINE B2 2 175 -23 2 891 495 0 0 0 chr4 40181018 40181073 -115449047 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 891 386 176 24 7 chr4 40181414 40181509 -115448611 - PB1D9 SINE Alu -21 96 5 2 891 668 123 8 34 chr4 40181735 40181853 -115448267 - RLTR33 LTR ERVK 0 678 564 2 891 243 0 0 0 chr4 40184407 40184434 -115445686 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 891 1078 70 7 14 chr4 40184440 40184585 -115445535 + B1_Mus1 SINE Alu 5 148 0 2 891 261 123 30 15 chr4 40184588 40184654 -115445466 + GA-rich Low_complexity Low_complexity 2 68 0 2 891 1154 30 0 0 chr4 40184749 40184882 -115445238 + B1_Mm SINE Alu 2 134 -13 2 891 219 36 0 0 chr4 40184882 40184910 -115445210 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 891 632 272 89 36 chr4 40184916 40185396 -115444724 + L1_Mur3 LINE L1 4139 4671 -1472 3 891 189 0 0 0 chr4 40185421 40185442 -115444678 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 3 891 27 0 0 0 chr4 40186876 40186903 -115443217 + GC_rich Low_complexity Low_complexity 1 27 0 3 891 233 271 0 0 chr4 40187015 40187074 -115443046 - L1ME2 LINE L1 -29 6135 6077 3 891 635 167 22 60 chr4 40187139 40187273 -115442847 - B1_Mur3 SINE Alu -10 139 11 3 891 2347 135 42 49 chr4 40187322 40187644 -115442476 + Lx4A LINE L1 6611 6928 -130 3 891 489 17 0 0 chr4 40187644 40187702 -115442418 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 891 2347 135 42 49 chr4 40187702 40187830 -115442290 + Lx4A LINE L1 6929 7058 0 3 891 483 179 71 0 chr4 40187851 40187864 -115442256 - MTC LTR MaLR -301 120 108 3 891 1098 45 45 0 chr4 40187864 40187998 -115442122 + B1_Mm SINE Alu 1 140 -7 3 891 246 42 41 20 chr4 40187998 40188047 -115442073 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 891 483 179 71 0 chr4 40188047 40188144 -115441976 - MTC LTR MaLR -314 107 3 3 891 1083 295 93 93 chr4 40188312 40189180 -115440940 - L1M5 LINE L1 -1262 4884 4017 3 891 412 254 43 48 chr4 40189196 40189351 -115440769 - MTD LTR MaLR -58 361 195 3 891 662 199 7 0 chr4 40189793 40189929 -115440191 - B1_Mus1 SINE Alu -7 141 5 3 891 230 116 0 23 chr4 40190038 40190082 -115440038 + (TTTCC)n Simple_repeat Simple_repeat 2 44 0 3 891 947 71 7 47 chr4 40190082 40190239 -115439881 - B1_Mus1 SINE Alu -91 220 7 3 891 335 239 99 43 chr4 40190375 40190411 -115439709 - L1M5 LINE L1 -2137 4009 3974 3 891 366 42 0 0 chr4 40190411 40190459 -115439661 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 891 335 239 99 43 chr4 40190459 40190584 -115439536 - L1M5 LINE L1 -2173 3973 3839 3 891 542 263 22 7 chr4 40190586 40190724 -115439396 - ID_B1 SINE B4 0 224 85 3 891 459 256 161 62 chr4 40190727 40191131 -115438989 - L1M5 LINE L1 -2293 3853 3410 3 891 387 334 79 104 chr4 40191137 40191531 -115438589 + MER57E2 LTR ERV1 1 384 -18 3 891 249 213 118 56 chr4 40191636 40191780 -115438340 - L1MEf LINE L1 -2896 3250 3098 3 891 600 137 0 0 chr4 40191793 40191888 -115438232 - B1_Mus2 SINE Alu -20 127 33 3 891 7851 75 8 1 chr4 40192216 40193751 -115436369 - L1_Mus1 LINE L1 0 6567 5023 3 891 826 290 10 60 chr4 40193803 40194104 -115436016 + B4 SINE B4 1 286 -6 3 891 257 109 0 21 chr4 40194527 40194574 -115435546 + (TATG)n Simple_repeat Simple_repeat 4 49 0 3 891 252 290 143 54 chr4 40194575 40194889 -115435231 - L1MEf LINE L1 -4019 2223 1882 3 891 784 170 0 72 chr4 40195276 40195428 -115434692 - B1_Mur2 SINE Alu 0 149 9 3 891 281 239 13 53 chr4 40195606 40195681 -115434439 + ID2 SINE ID 9 80 -3 3 891 22 0 0 0 chr4 40195748 40195770 -115434350 + AT_rich Low_complexity Low_complexity 1 22 0 3 891 1117 71 0 7 chr4 40195977 40196119 -115434001 + B1_Mm SINE Alu 2 142 -5 3 891 226 175 0 60 chr4 40196122 40196189 -115433931 + GA-rich Low_complexity Low_complexity 1 63 0 3 891 621 0 0 0 chr4 40196189 40196258 -115433862 + (GAAAA)n Simple_repeat Simple_repeat 4 72 0 3 891 274 173 61 85 chr4 40196537 40196619 -115433501 - B1_Mur3 SINE Alu -1 148 69 3 891 279 0 0 0 chr4 40196634 40196665 -115433455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 891 297 275 75 0 chr4 40196743 40196853 -115433267 - B1F SINE Alu -27 122 1 3 891 276 268 28 0 chr4 40196886 40196957 -115433163 - B1F SINE Alu -10 139 67 3 891 508 204 44 0 chr4 40197071 40197184 -115432936 + B1F2 SINE Alu 32 149 0 3 891 1595 52 0 0 chr4 40197600 40197791 -115432329 + B2_Mm1t SINE B2 1 191 -2 3 891 263 283 51 42 chr4 40197792 40197910 -115432210 - L2 LINE L2 -341 3078 2960 3 891 307 122 0 0 chr4 40198047 40198096 -115432024 + RLTR42 LTR ERVK 5 53 -186 3 891 198 103 0 0 chr4 40198114 40198143 -115431977 + (TTGGGG)n Simple_repeat Simple_repeat 2 30 0 3 891 586 74 0 0 chr4 40198297 40198378 -115431742 + B2_Mm2 SINE B2 2 82 -113 3 891 389 36 18 0 chr4 40198427 40198482 -115431638 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 3 891 997 76 8 8 chr4 40198656 40198789 -115431331 - B1_Mus1 SINE Alu -13 135 3 3 891 270 233 0 16 chr4 40199166 40199227 -115430893 - PB1D10 SINE Alu -33 84 25 3 891 1088 51 0 0 chr4 40200141 40200279 -115429841 + B1_Mus2 SINE Alu 5 142 -5 3 891 405 0 0 0 chr4 40200282 40200327 -115429793 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 3 891 189 0 0 0 chr4 40200553 40200574 -115429546 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 891 1095 57 6 19 chr4 40200574 40200734 -115429386 - B2_Mm1a SINE B2 -35 158 1 3 891 289 284 132 22 chr4 40200882 40201110 -115429010 + L1MA4A LINE L1 5700 5949 -363 3 891 22 0 0 0 chr4 40202239 40202261 -115427859 + AT_rich Low_complexity Low_complexity 1 22 0 3 891 8201 141 107 51 chr4 40202538 40204358 -115425762 + Lx7 LINE L1 3429 5350 -530 3 891 2126 206 112 11 chr4 40204357 40204917 -115425203 + Lx7 LINE L1 5779 6395 -1301 3 891 1447 214 161 27 chr4 40204910 40205357 -115424763 + Lx6 LINE L1 6406 6912 -548 3 891 709 214 133 23 chr4 40205382 40205707 -115424413 + Lx6 LINE L1 6995 7223 -237 3 891 214 158 0 0 chr4 40207640 40207678 -115422442 + CT-rich Low_complexity Low_complexity 2 39 0 3 891 231 61 0 0 chr4 40211427 40211460 -115418660 + (T)n Simple_repeat Simple_repeat 1 33 0 3 891 367 284 188 14 chr4 40212126 40212344 -115417776 + Lx8 LINE L1 6904 7159 -314 3 891 698 270 40 6 chr4 40212441 40212616 -115417504 + Lx8 LINE L1 7158 7338 -135 3 891 216 0 0 0 chr4 40212689 40212713 -115417407 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 891 380 222 61 0 chr4 40213415 40213514 -115416606 - PB1D9 SINE Alu -15 105 1 3 891 1672 139 104 10 chr4 40213607 40213904 -115416216 + ORR1A4 LTR MaLR 5 329 0 3 891 902 109 39 0 chr4 40214252 40214380 -115415740 - B1_Mus1 SINE Alu -13 135 3 3 891 378 304 7 14 chr4 40214419 40214559 -115415561 + ID_B1 SINE B4 83 221 -3 3 891 1243 34 0 0 chr4 40217332 40217479 -115412641 - B1_Mm SINE Alu 0 147 1 3 891 722 179 64 7 chr4 40218006 40218147 -115411973 + B1_Mur2 SINE Alu 1 149 0 3 891 1647 26 11 0 chr4 40218720 40218911 -115411209 + B2_Mm1a SINE B2 1 193 0 3 891 372 282 148 52 chr4 40220277 40220602 -115409518 + L2a LINE L2 3053 3408 -18 3 891 519 282 14 40 chr4 40220780 40220928 -115409192 + RSINE1 SINE B4 1 144 -21 3 891 1712 26 0 0 chr4 40221364 40221556 -115408564 + B2_Mm1a SINE B2 2 193 0 3 891 736 252 34 43 chr4 40221568 40221775 -115408345 + B3A SINE B2 2 206 -10 3 891 455 244 44 60 chr4 40223367 40223550 -115406570 - L1MC4 LINE L1 -453 7589 7410 3 891 356 290 99 17 chr4 40223618 40223805 -115406315 - L1MC4 LINE L1 -1304 6738 6519 3 891 1032 197 38 19 chr4 40224839 40225051 -115405069 - B3 SINE B2 0 216 1 3 891 291 169 16 125 chr4 40225065 40225178 -115404942 - PB1D7 SINE Alu -10 139 12 3 891 294 307 99 77 chr4 40226880 40227233 -115402887 + L1MC4a LINE L1 5605 5965 -1917 3 891 335 282 128 0 chr4 40227282 40227399 -115402721 - ID_B1 SINE B4 -7 217 86 3 891 264 186 81 54 chr4 40227482 40227556 -115402564 + B2_Mm2 SINE B2 10 85 -110 3 891 1326 87 16 11 chr4 40227802 40227987 -115402133 - B2_Mm2 SINE B2 -7 188 3 3 891 441 302 78 59 chr4 40228066 40228386 -115401734 - L1ME1 LINE L1 -157 6022 5697 3 891 3868 126 41 178 chr4 40228742 40229332 -115400788 - Lx3C LINE L1 -50 6926 6328 3 891 976 88 0 52 chr4 40229332 40229439 -115400681 - ORR1A1 LTR MaLR -8 338 236 3 891 2974 43 0 0 chr4 40229439 40229785 -115400335 + ORR1A1 LTR MaLR 1 346 0 3 891 13280 50 27 54 chr4 40229785 40231146 -115398974 + ORR1A1-int LTR MaLR 1 1392 -400 3 891 1267 34 0 0 chr4 40231146 40231293 -115398827 + B1_Mm SINE Alu 1 147 0 3 891 13280 50 27 54 chr4 40231293 40231774 -115398346 + ORR1A1-int LTR MaLR 1393 1792 0 3 891 3005 38 0 0 chr4 40231774 40232120 -115398000 + ORR1A1 LTR MaLR 1 346 0 3 891 976 88 0 52 chr4 40232120 40232165 -115397955 - ORR1A1 LTR MaLR -111 235 194 3 891 3868 126 41 178 chr4 40232165 40232303 -115397817 - Lx3C LINE L1 -649 6327 6176 3 891 3053 72 14 19 chr4 40232303 40232726 -115397394 - BGLII LTR ERVK 0 421 1 3 891 3868 126 41 178 chr4 40232726 40232777 -115397343 - Lx3C LINE L1 -801 6175 6123 3 891 1205 120 11 0 chr4 40233779 40233954 -115396166 + B2_Mm1t SINE B2 3 179 -14 3 891 281 243 114 0 chr4 40234479 40234548 -115395572 + B4 SINE B4 3 79 -213 3 891 1173 221 120 6 chr4 40234548 40234872 -115395248 + ORR1D2 LTR MaLR 1 361 -9 3 891 1082 71 14 0 chr4 40234872 40235012 -115395108 + B1_Mus2 SINE Alu 1 142 -5 3 891 295 206 72 14 chr4 40235035 40235104 -115395016 + RSINE1 SINE B4 82 154 -11 3 891 492 62 0 0 chr4 40235111 40235175 -115394945 + (CATA)n Simple_repeat Simple_repeat 1 64 0 3 891 21 0 0 0 chr4 40235175 40235196 -115394924 + AT_rich Low_complexity Low_complexity 1 21 0 3 891 297 283 0 54 chr4 40235518 40235630 -115394490 - B1F SINE Alu -1 148 43 3 891 668 270 75 18 chr4 40236367 40236593 -115393527 + B4A SINE B4 50 288 -4 3 891 370 289 127 40 chr4 40236928 40237054 -115393066 + ID_B1 SINE B4 70 206 -18 3 891 456 19 0 0 chr4 40237471 40237524 -115392596 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 891 288 0 0 0 chr4 40237524 40237555 -115392565 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 891 392 276 51 0 chr4 40237558 40237656 -115392464 - PB1D10 SINE Alu -14 103 1 3 891 286 186 34 0 chr4 40237687 40237746 -115392374 + B3A SINE B2 1 61 -137 3 891 3915 103 24 4 chr4 40237747 40238281 -115391839 - LTRIS2 LTR ERV1 0 564 19 3 891 207 0 0 0 chr4 40238281 40238304 -115391816 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 891 3915 103 24 4 chr4 40238304 40238322 -115391798 - LTRIS2 LTR ERV1 -546 18 1 3 891 306 278 60 0 chr4 40238323 40238456 -115391664 - MuRRS4-int LTR ERV1 -42 5021 4881 3 891 1066 83 0 0 chr4 40238452 40238585 -115391535 - MuRRS4-int LTR ERV1 -1306 3757 3625 3 111 6860 128 13 33 chr4 40238583 40240124 -115389996 - MuRRS4-int LTR ERV1 -2272 2791 1104 3 892 345 122 0 0 chr4 40240123 40240172 -115389948 - MuRRS4-int LTR ERV1 -4265 798 750 3 892 233 224 50 33 chr4 40240177 40240237 -115389883 - MTC-int LTR MaLR -283 975 915 3 892 4818 106 19 6 chr4 40240238 40240923 -115389197 - RMER16-int LTR ERVK -4034 1372 679 3 892 480 185 93 0 chr4 40240893 40241001 -115389119 - RMER16-int LTR ERVK -5062 344 227 3 892 404 261 126 35 chr4 40240993 40241223 -115388897 - MuRRS4-int LTR ERV1 -4599 464 214 3 892 3862 106 12 33 chr4 40241528 40242102 -115388018 - LTRIS2 LTR ERV1 0 564 3 3 892 584 264 20 13 chr4 40242105 40242255 -115387865 + B3 SINE B2 60 210 -6 3 892 29 0 0 0 chr4 40242255 40242284 -115387836 + AT_rich Low_complexity Low_complexity 1 29 0 3 892 2816 168 83 123 chr4 40242399 40243367 -115386753 + RLTR13D6 LTR ERVK 1 856 -46 4 892 1102 159 64 15 chr4 40243392 40243596 -115386524 - B3 SINE B2 0 216 3 4 892 261 303 53 0 chr4 40243637 40243713 -115386407 - FAM SINE Alu -82 229 150 4 892 976 205 53 5 chr4 40244013 40244219 -115385901 - B3 SINE B2 0 216 1 4 892 1380 95 16 0 chr4 40244373 40244563 -115385557 - B2_Mm2 SINE B2 -2 193 1 4 892 974 82 131 34 chr4 40244568 40244744 -115385376 - B2_Mm2 SINE B2 -1 194 2 4 892 335 270 23 32 chr4 40245026 40245121 -115384999 - PB1D10 SINE Alu -2 115 23 4 892 351 0 0 0 chr4 40245121 40245160 -115384960 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 892 189 94 0 0 chr4 40245187 40245219 -115384901 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 892 1696 84 14 54 chr4 40245219 40245496 -115384624 - MT2C_Mm LTR ERVL 0 475 210 4 892 399 21 0 0 chr4 40245543 40245591 -115384529 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 892 323 261 25 59 chr4 40245647 40245765 -115384355 - ID_B1 SINE B4 -2 222 109 4 892 1078 111 180 0 chr4 40246073 40246262 -115383858 + URR1B DNA MER1_type 1 223 -2 4 892 23 0 0 0 chr4 40247862 40247885 -115382235 + GC_rich Low_complexity Low_complexity 1 23 0 4 892 253 227 67 22 chr4 40248169 40248259 -115381861 - PB1D10 SINE Alu -23 94 1 4 892 222 299 187 20 chr4 40249012 40249162 -115380958 + B4 SINE B4 2 176 -116 4 892 396 279 72 72 chr4 40249785 40250021 -115380099 + L1MEc LINE L1 66 301 -6099 4 892 25 51 0 0 chr4 40250476 40250515 -115379605 + AT_rich Low_complexity Low_complexity 1 39 0 4 892 253 269 220 33 chr4 40250800 40250950 -115379170 + RMER15 LTR ERVL 299 476 -99 4 892 596 225 170 52 chr4 40250972 40251202 -115378918 + MTD LTR MaLR 8 264 -155 4 892 717 182 51 0 chr4 40251191 40251328 -115378792 - URR1A DNA MER1_type -82 144 1 4 892 22 0 0 0 chr4 40252879 40252901 -115377219 + AT_rich Low_complexity Low_complexity 1 22 0 4 892 7755 93 5 9 chr4 40252902 40254213 -115375907 - Lx LINE L1 -7 6647 5340 4 892 809 188 134 5 chr4 40254283 40254470 -115375650 - B3 SINE B2 -5 211 1 4 892 305 315 13 58 chr4 40254745 40254900 -115375220 + RSINE1 SINE B4 3 150 -15 4 892 489 232 0 0 chr4 40255244 40255339 -115374781 - PB1D10 SINE Alu -21 96 2 4 892 258 243 116 87 chr4 40255775 40255982 -115374138 - HAL1b LINE L1 -926 1083 871 4 892 463 95 27 0 chr4 40256607 40256681 -115373439 + RMER10B LTR ERVL 323 398 0 4 892 268 253 13 39 chr4 40257107 40257185 -115372935 + RLTR23 LTR ERV1 324 399 -31 4 892 227 200 0 0 chr4 40257261 40257306 -115372814 + RSINE1 SINE B4 86 130 -35 4 892 249 83 0 0 chr4 40257326 40257362 -115372758 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4 892 241 291 88 26 chr4 40258373 40258486 -115371634 + MIRc SINE MIR 30 149 -119 4 892 234 0 0 0 chr4 40258686 40258712 -115371408 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 892 275 268 0 0 chr4 40258808 40258864 -115371256 - ID_B1 SINE B4 -11 213 158 4 892 336 351 90 29 chr4 40258940 40259219 -115370901 - MLT1J LTR MaLR -19 493 198 4 892 235 121 17 17 chr4 40259258 40259317 -115370803 + T-rich Low_complexity Low_complexity 2 60 0 4 892 985 216 122 17 chr4 40259539 40259883 -115370237 + RMER17C LTR ERVK 1 380 -30 4 892 501 58 0 0 chr4 40259886 40259955 -115370165 + (TTCTC)n Simple_repeat Simple_repeat 4 72 0 4 892 411 21 0 0 chr4 40259957 40260005 -115370115 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 4 892 543 261 38 135 chr4 40260066 40260354 -115369766 - ORR1E LTR MaLR -9 350 91 4 892 1330 201 68 11 chr4 40260350 40260631 -115369489 - ORR1D1 LTR MaLR -76 298 2 4 892 1491 249 156 27 chr4 40261047 40261566 -115368554 - L1_Mur3 LINE L1 -106 5741 5156 4 892 3667 286 43 60 chr4 40261594 40261905 -115368215 + Lx8 LINE L1 5846 6090 -1383 4 892 1173 69 0 0 chr4 40261905 40262049 -115368071 + B1_Mus1 SINE Alu 1 144 -4 4 892 3667 304 58 55 chr4 40262049 40262146 -115367974 + Lx8 LINE L1 6091 6177 -1296 4 892 768 37 18 9 chr4 40262146 40262255 -115367865 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 892 3667 304 58 55 chr4 40262255 40263436 -115366684 + Lx8 LINE L1 6178 7414 -59 4 892 357 261 70 50 chr4 40263562 40263743 -115366377 + L1M5 LINE L1 5514 5702 -422 4 892 23 0 0 0 chr4 40263968 40263991 -115366129 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 6939 93 15 1 chr4 40264800 40265757 -115364363 + Lx2 LINE L1 6028 6997 0 4 892 695 34 0 0 chr4 40265871 40265960 -115364160 - L1Md_T LINE L1 0 6582 6494 4 892 202 214 0 0 chr4 40266855 40266897 -115363223 + A-rich Low_complexity Low_complexity 2 43 0 4 892 359 267 48 113 chr4 40267714 40267747 -115362373 + B4A SINE B4 63 179 -113 4 892 851 151 14 0 chr4 40267747 40267886 -115362234 + B1_Mus1 SINE Alu 2 142 -6 4 892 359 267 48 113 chr4 40267886 40267900 -115362220 + B4A SINE B4 180 236 -56 4 892 1334 96 21 5 chr4 40268244 40268433 -115361687 - B2_Mm2 SINE B2 -2 193 2 4 892 248 307 40 0 chr4 40268520 40268595 -115361525 - ID_B1 SINE B4 -70 154 77 4 892 441 129 0 0 chr4 40270164 40270234 -115359886 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 4 892 470 339 0 0 chr4 40270249 40270379 -115359741 - RSINE1 SINE B4 -33 132 3 4 892 3873 270 54 20 chr4 40270403 40271400 -115358720 + Lx8 LINE L1 6298 7334 -139 4 892 234 0 0 0 chr4 40271400 40271426 -115358694 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 892 3873 270 54 20 chr4 40271426 40271562 -115358558 + Lx8 LINE L1 7335 7469 -4 4 892 690 47 0 0 chr4 40272250 40272336 -115357784 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 892 841 248 43 19 chr4 40272494 40272704 -115357416 - B3 SINE B2 -1 215 1 4 892 337 158 13 29 chr4 40272755 40272833 -115357287 - L1M5 LINE L1 -484 5678 5596 4 892 354 202 0 125 chr4 40272884 40272980 -115357140 - B3 SINE B2 -132 84 1 4 892 964 137 0 33 chr4 40273023 40273174 -115356946 + B1_Mur4 SINE Alu 5 150 0 4 892 500 295 49 49 chr4 40273235 40273399 -115356721 - Lx8 LINE L1 -759 6714 6551 4 892 203 139 47 0 chr4 40273615 40273658 -115356462 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 892 845 174 0 6 chr4 40273658 40273814 -115356306 - MT2A LTR ERVL -367 166 12 4 892 276 98 0 0 chr4 40273816 40273857 -115356263 - B3A SINE B2 -156 42 2 4 892 609 253 104 132 chr4 40273896 40274329 -115355791 - RLTR23 LTR ERV1 0 430 10 4 892 384 325 52 102 chr4 40274892 40275217 -115354903 + ORR1E LTR MaLR 3 311 -48 4 892 574 321 24 95 chr4 40275225 40275521 -115354599 - MTEa LTR MaLR -6 373 99 4 892 216 97 0 0 chr4 40275572 40275603 -115354517 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 4 892 468 51 0 0 chr4 40275615 40275674 -115354446 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 892 264 351 67 70 chr4 40275975 40276260 -115353860 - L2 LINE L2 -432 2987 2704 4 892 405 0 0 0 chr4 40276357 40276402 -115353718 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 892 402 207 146 6 chr4 40277601 40277766 -115352354 - MER33 DNA MER1_type -9 315 128 4 892 621 284 128 80 chr4 40277774 40277941 -115352179 - Lx9 LINE L1 -15 7629 7467 4 892 201 39 0 0 chr4 40277941 40277967 -115352153 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 892 621 284 128 80 chr4 40277967 40278426 -115351694 - Lx9 LINE L1 -178 7466 6974 4 892 252 0 0 0 chr4 40278494 40278522 -115351598 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 892 259 322 0 0 chr4 40278525 40278612 -115351508 - MER33 DNA MER1_type -237 87 1 4 892 7996 50 11 1 chr4 40278653 40279626 -115350494 + L1Md_F2 LINE L1 5588 6570 -12 4 892 225 0 0 0 chr4 40280369 40280394 -115349726 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 892 441 0 0 0 chr4 40280394 40280443 -115349677 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 892 1097 135 141 0 chr4 40280528 40280713 -115349407 - B3 SINE B2 -2 214 4 4 892 371 247 0 0 chr4 40280741 40280822 -115349298 - ID4_ SINE ID 0 83 3 4 892 278 170 0 0 chr4 40280832 40280885 -115349235 - B1F SINE Alu -2 147 95 4 892 214 331 0 61 chr4 40281754 40281886 -115348234 + MIRb SINE MIR 43 156 -106 4 892 22 0 0 0 chr4 40282628 40282650 -115347470 + AT_rich Low_complexity Low_complexity 1 22 0 4 892 261 297 72 72 chr4 40283112 40283319 -115346801 + B4 SINE B4 11 217 -75 4 892 453 116 0 0 chr4 40283418 40283487 -115346633 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 892 546 242 70 0 chr4 40284185 40284313 -115345807 - ID_B1 SINE B4 -3 221 85 4 892 2035 86 9 95 chr4 40284498 40284844 -115345276 + ORR1A3 LTR MaLR 1 316 -10 4 892 1370 164 88 5 chr4 40285068 40285346 -115344774 + ORR1D1 LTR MaLR 5 300 -84 4 892 282 250 101 39 chr4 40285376 40285505 -115344615 - MIR SINE MIR -124 138 2 4 892 372 267 52 126 chr4 40285660 40285891 -115344229 + B4 SINE B4 4 217 -75 4 892 414 0 0 0 chr4 40286032 40286078 -115344042 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 4 892 2273 237 99 2 chr4 40286086 40286643 -115343477 + Lx8 LINE L1 6477 7087 -386 4 892 1894 132 54 17 chr4 40286653 40286995 -115343125 + ORR1B2 LTR MaLR 1 359 -8 4 892 198 0 0 0 chr4 40286995 40287017 -115343103 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4 892 1894 132 54 17 chr4 40287017 40287028 -115343092 + ORR1B2 LTR MaLR 360 367 0 4 892 427 275 52 32 chr4 40287035 40287189 -115342931 + Lx8 LINE L1 7113 7269 -204 4 892 283 145 0 50 chr4 40287225 40287305 -115342815 + (TCTG)n Simple_repeat Simple_repeat 1 76 0 4 892 468 0 0 0 chr4 40287381 40287433 -115342687 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 892 641 13 13 0 chr4 40288280 40288358 -115341762 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 892 868 254 41 119 chr4 40288390 40288778 -115341342 + MTE2a LTR MaLR 22 379 0 5 892 1322 135 9 31 chr4 40288821 40289043 -115341077 + URR1B DNA MER1_type 5 221 -4 5 892 4969 206 52 45 chr4 40290138 40291263 -115338857 - Lx5 LINE L1 -3 7047 5916 5 892 231 36 0 0 chr4 40291268 40291296 -115338824 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 5 892 5754 165 51 21 chr4 40291296 40292385 -115337735 - Lx5 LINE L1 -16 7034 5913 5 892 14477 80 30 11 chr4 40293228 40295987 -115334133 - L1VL2 LINE L1 -626 2989 177 5 892 983 208 44 5 chr4 40296006 40296209 -115333911 - B3 SINE B2 -2 214 4 5 892 609 288 40 85 chr4 40297202 40297578 -115332542 - ORR1E LTR MaLR 0 359 1 5 892 589 86 0 21 chr4 40298563 40298658 -115331462 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 5 892 297 0 0 0 chr4 40299471 40299504 -115330616 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 892 252 0 0 0 chr4 40299504 40299531 -115330589 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 892 247 304 28 38 chr4 40299569 40299675 -115330445 - RSINE1 SINE B4 -60 105 1 5 892 630 306 18 40 chr4 40300680 40300905 -115329215 + ID_B1 SINE B4 4 223 -1 5 892 336 207 181 62 chr4 40301298 40301442 -115328678 - Charlie4z DNA MER1_type -2 165 5 5 892 717 73 0 0 chr4 40301487 40301583 -115328537 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 892 1518 146 135 50 chr4 40301997 40302183 -115327937 + ORR1C2 LTR MaLR 5 183 -201 5 892 459 0 0 0 chr4 40302183 40302234 -115327886 + (CTCA)n Simple_repeat Simple_repeat 1 51 0 5 892 522 31 0 0 chr4 40302234 40302298 -115327822 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5 892 1518 146 135 50 chr4 40302298 40302428 -115327692 + ORR1C2 LTR MaLR 184 348 -36 5 892 690 145 26 0 chr4 40302440 40302557 -115327563 + B1_Mur3 SINE Alu 30 149 0 5 892 425 53 0 0 chr4 40302573 40302630 -115327490 + ORR1C2 LTR MaLR 328 384 0 5 892 218 226 11 34 chr4 40303144 40303323 -115326797 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 5 892 381 245 0 0 chr4 40303326 40303481 -115326639 + (CA)n Simple_repeat Simple_repeat 2 156 0 5 892 207 239 0 0 chr4 40303516 40303583 -115326537 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 892 435 234 0 0 chr4 40303620 40303765 -115326355 + (CA)n Simple_repeat Simple_repeat 2 146 0 5 892 393 240 0 0 chr4 40303811 40303965 -115326155 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 892 426 236 0 0 chr4 40303979 40304144 -115325976 + (CA)n Simple_repeat Simple_repeat 1 165 0 5 892 348 164 13 64 chr4 40304186 40304264 -115325856 + HAL1-3A_ME LINE L1 1976 2049 -809 5 892 3327 137 64 19 chr4 40305510 40306103 -115324017 - Lx5 LINE L1 -511 6539 5920 5 892 2975 143 12 28 chr4 40306103 40306613 -115323507 + Lx4B LINE L1 6553 7054 -4 5 892 23 0 0 0 chr4 40306620 40306643 -115323477 + AT_rich Low_complexity Low_complexity 1 23 0 5 892 234 364 51 10 chr4 40306678 40306875 -115323245 - MamRep605 Unknown Unknown -220 656 452 5 892 423 0 0 0 chr4 40307121 40307168 -115322952 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 892 891 247 57 145 chr4 40308168 40308500 -115321620 - MTD LTR MaLR 0 379 96 5 892 926 243 28 23 chr4 40308500 40308715 -115321405 + B3 SINE B2 1 216 0 5 892 891 286 41 65 chr4 40308715 40308813 -115321307 - MTD LTR MaLR -301 118 18 5 892 1404 209 69 58 chr4 40308864 40309224 -115320896 - ORR1D2 LTR MaLR -4 366 3 5 892 339 306 97 0 chr4 40309643 40309777 -115320343 + B4A SINE B4 137 283 -9 5 892 321 219 0 0 chr4 40310332 40310405 -115319715 + (CACG)n Simple_repeat Simple_repeat 3 75 0 5 892 524 120 9 36 chr4 40311983 40312095 -115318025 + CT-rich Low_complexity Low_complexity 2 110 0 5 892 21 36 0 0 chr4 40312452 40312480 -115317640 + AT_rich Low_complexity Low_complexity 1 28 0 5 892 1501 158 58 58 chr4 40313567 40313896 -115316224 - ORR1A4 LTR MaLR 0 329 1 5 892 187 125 31 0 chr4 40314223 40314255 -115315865 + MIRc SINE MIR 91 123 -145 5 892 239 218 222 33 chr4 40314380 40314470 -115315650 + RLTR40 LTR ERVK 1 107 -710 5 892 327 258 0 0 chr4 40314477 40314543 -115315577 + PB1D9 SINE Alu 2 67 -53 5 892 230 224 81 12 chr4 40314985 40315071 -115315049 + LTR78 LTR ERV1 1 92 -1212 5 892 262 352 149 23 chr4 40315415 40315630 -115314490 + LTR78 LTR ERV1 493 734 -570 5 892 3496 23 10 0 chr4 40316373 40316765 -115313355 + MTA_Mm LTR MaLR 1 396 0 5 892 3374 43 5 0 chr4 40316935 40317329 -115312791 - MTA_Mm LTR MaLR 0 396 1 5 892 276 320 14 86 chr4 40318338 40318478 -115311642 - MIRb SINE MIR -49 219 90 5 892 272 245 64 109 chr4 40318591 40318701 -115311419 + U6 snRNA snRNA 2 106 -1 5 892 1161 143 0 5 chr4 40318747 40318937 -115311183 + B2_Mm2 SINE B2 2 190 -5 5 892 306 87 0 0 chr4 40320327 40320373 -115309747 + (CTA)n Simple_repeat Simple_repeat 1 46 0 5 892 441 76 0 0 chr4 40323138 40323204 -115306916 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 892 405 39 0 0 chr4 40323639 40323690 -115306430 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 892 393 313 122 0 chr4 40323693 40323824 -115306296 - RSINE1 SINE B4 -17 148 2 5 892 1255 41 0 0 chr4 40323970 40324116 -115306004 + B1_Mus1 SINE Alu 3 148 0 5 892 722 93 9 0 chr4 40324116 40324224 -115305896 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 5 892 311 0 0 25 chr4 40324293 40324333 -115305787 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 892 314 305 30 18 chr4 40325517 40325668 -115304452 - LTR16C LTR ERVL -12 477 295 5 892 399 113 0 0 chr4 40326506 40326568 -115303552 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 892 337 288 83 19 chr4 40326794 40326950 -115303170 - MLT1G3 LTR MaLR -28 567 402 5 892 207 191 28 56 chr4 40327127 40327199 -115302921 + GA-rich Low_complexity Low_complexity 2 71 0 5 892 226 281 0 119 chr4 40327662 40327763 -115302357 - Charlie15a DNA MER1_type -37 187 99 5 892 219 139 0 0 chr4 40327942 40327978 -115302142 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 5 892 907 251 36 78 chr4 40327989 40328270 -115301850 - B4A SINE B4 -22 270 2 5 892 240 59 0 0 chr4 40328310 40328344 -115301776 + (T)n Simple_repeat Simple_repeat 1 34 0 5 892 545 216 48 0 chr4 40330050 40330175 -115299945 - B3 SINE B2 -6 210 80 5 892 373 289 9 0 chr4 40330416 40330530 -115299590 + MER73 LTR ERVL 19 133 -511 5 892 239 258 66 95 chr4 40330616 40330753 -115299367 + MER73 LTR ERVL 284 416 -228 5 892 576 200 26 127 chr4 40330865 40331054 -115299066 + B3A SINE B2 29 198 0 5 892 286 250 264 0 chr4 40331068 40331216 -115298904 + MER73 LTR ERVL 458 644 0 5 892 26 0 0 0 chr4 40331534 40331560 -115298560 + AT_rich Low_complexity Low_complexity 1 26 0 5 892 817 206 14 0 chr4 40331560 40331706 -115298414 - B1_Mur1 SINE Alu -1 148 1 5 892 960 82 32 16 chr4 40332048 40332297 -115297823 + (AGGGGG)n Simple_repeat Simple_repeat 1 252 0 5 892 5664 58 22 0 chr4 40333066 40333865 -115296255 + RLTR22_Mus LTR ERVK 1 817 -991 5 892 1463 101 5 15 chr4 40334140 40334372 -115295748 + RLTR22_Mur LTR ERVK 1591 1810 -38 5 892 229 425 6 6 chr4 40335966 40336146 -115293974 + MIRb SINE MIR 41 220 -48 5 892 270 88 35 17 chr4 40336756 40336814 -115293306 - B2_Mm2 SINE B2 0 195 137 5 892 1370 74 11 0 chr4 40336850 40337026 -115293094 - B2_Mm1t SINE B2 -14 179 2 5 892 439 314 67 64 chr4 40337387 40337700 -115292420 - MLT1B LTR MaLR -43 347 34 5 892 22 0 0 0 chr4 40338014 40338036 -115292084 + AT_rich Low_complexity Low_complexity 1 22 0 5 892 235 164 33 0 chr4 40338123 40338184 -115291936 + CT-rich Low_complexity Low_complexity 2 64 0 5 892 1770 211 99 17 chr4 40338189 40338653 -115291467 - L1_Rod LINE L1 -314 5533 5032 5 892 965 301 82 50 chr4 40338686 40339464 -115290656 + Lx8 LINE L1 5543 6364 -1109 5 892 608 200 0 0 chr4 40339466 40339576 -115290544 + MTC LTR MaLR 1 110 -311 5 892 650 185 74 0 chr4 40339603 40339738 -115290382 + URR1A DNA MER1_type 44 188 -38 5 892 288 0 0 0 chr4 40339811 40339843 -115290277 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 892 782 293 137 5 chr4 40339843 40340237 -115289883 + Lx8 LINE L1 7172 7617 -27 5 892 2170 116 0 94 chr4 40340250 40340613 -115289507 + ORR1A4 LTR MaLR 1 329 0 5 892 684 273 0 62 chr4 40340656 40340867 -115289253 - B3A SINE B2 0 198 1 5 892 292 247 78 49 chr4 40340980 40341082 -115289038 + PB1D10 SINE Alu 13 117 0 5 892 679 313 16 72 chr4 40341086 40341392 -115288728 + B4 SINE B4 4 292 0 5 892 285 29 0 0 chr4 40341404 40341438 -115288682 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 5 892 448 281 49 21 chr4 40342157 40342299 -115287821 - MER20 DNA MER1_type -3 216 71 5 892 648 231 198 9 chr4 40342783 40343010 -115287110 - RMER21B LTR ERV1 -275 567 298 5 892 315 258 0 0 chr4 40343051 40343117 -115287003 + PB1D10 SINE Alu 50 115 -2 5 892 195 129 0 0 chr4 40343122 40343153 -115286967 + (GAA)n Simple_repeat Simple_repeat 2 32 0 5 892 365 239 11 32 chr4 40343518 40343613 -115286507 + L1MA7 LINE L1 5393 5485 -815 5 892 3266 196 200 14 chr4 40343606 40344319 -115285801 + Lx9 LINE L1 6558 7403 -241 5 892 2656 179 69 9 chr4 40344324 40344859 -115285261 + RMER15 LTR ERVL 4 570 -5 5 892 1269 282 54 19 chr4 40344993 40345464 -115284656 + L1MA7 LINE L1 5472 5952 -228 5 892 306 0 0 0 chr4 40345464 40345498 -115284622 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 892 730 310 77 39 chr4 40345498 40345536 -115284584 + L1MA7 LINE L1 5953 6000 -180 5 892 560 297 69 67 chr4 40345867 40346228 -115283892 + MT2A LTR ERVL 3 364 -169 5 892 578 296 19 19 chr4 40346899 40347109 -115283011 - Charlie13b DNA Charlie -90 422 213 5 892 655 294 20 0 chr4 40348400 40348553 -115281567 + B3A SINE B2 1 156 -42 5 892 621 72 0 0 chr4 40348565 40348648 -115281472 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 892 495 118 0 0 chr4 40348653 40348729 -115281391 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 892 1096 115 11 42 chr4 40348729 40348920 -115281200 - ORR1C2 LTR MaLR -199 185 1 5 892 228 135 0 0 chr4 40349249 40349286 -115280834 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 5 892 3243 45 25 0 chr4 40349311 40349712 -115280408 - RLTR10A LTR ERVK 0 411 1 5 892 2056 182 20 10 chr4 40349814 40350220 -115279900 + MTC LTR MaLR 4 413 -8 6 892 264 158 0 0 chr4 40350249 40350306 -115279814 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 892 189 121 0 0 chr4 40350327 40350360 -115279760 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 6 892 281 229 200 3 chr4 40350749 40350869 -115279251 + MIRb SINE MIR 86 233 -35 6 892 4140 193 25 9 chr4 40351205 40351965 -115278155 - Lx5 LINE L1 -3 7047 6276 6 892 4201 115 27 8 chr4 40352022 40352786 -115277334 + Lx5 LINE L1 5152 5950 -1100 6 892 350 276 93 5 chr4 40352833 40353037 -115277083 - L1MEg LINE L1 -2472 3847 3626 6 892 24 32 0 0 chr4 40353093 40353124 -115276996 + AT_rich Low_complexity Low_complexity 1 31 0 6 892 949 259 37 22 chr4 40353244 40353513 -115276607 - Lx7 LINE L1 -335 7361 7089 6 892 432 290 84 53 chr4 40353545 40353863 -115276257 - L1MEg LINE L1 -2811 3508 3170 6 892 696 193 234 0 chr4 40353863 40354034 -115276086 + B3 SINE B2 4 214 -2 6 892 432 290 84 53 chr4 40354034 40354167 -115275953 - L1MEg LINE L1 -3150 3169 3044 6 892 1830 224 38 30 chr4 40354170 40354640 -115275480 - RMER19C LTR ERVK 0 611 138 6 892 238 254 30 0 chr4 40354679 40354746 -115275374 - L1MEg LINE L1 -3272 3047 2979 6 892 318 304 350 3 chr4 40354950 40355289 -115274831 - L1MEg LINE L1 -3654 2665 2209 6 892 382 314 56 78 chr4 40355321 40355694 -115274426 - L1MEg LINE L1 -4894 1521 1157 6 892 225 304 50 74 chr4 40356007 40356128 -115273992 - L1MEg LINE L1 -5826 589 472 6 892 2051 110 20 73 chr4 40357455 40357799 -115272321 + ORR1A3 LTR MaLR 1 326 0 6 892 395 248 38 0 chr4 40357813 40357918 -115272202 + ID_B1 SINE B4 114 222 -2 6 892 698 250 167 32 chr4 40360177 40360429 -115269691 + B4A SINE B4 3 288 -4 6 892 189 74 0 0 chr4 40360452 40360479 -115269641 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 892 279 0 0 0 chr4 40361245 40361276 -115268844 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 892 645 49 0 0 chr4 40361276 40361356 -115268764 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 892 259 366 25 20 chr4 40361359 40361557 -115268563 + L2c LINE L2 3181 3379 -8 6 892 405 0 0 0 chr4 40361619 40361664 -115268456 + (CTG)n Simple_repeat Simple_repeat 1 45 0 6 892 462 320 48 31 chr4 40362345 40362574 -115267546 - ORR1E LTR MaLR -123 236 4 6 892 2387 80 0 0 chr4 40362800 40363124 -115266996 - MTA_Mm LTR MaLR 0 396 73 6 892 5024 127 51 17 chr4 40363121 40364005 -115266115 - RMER12 LTR ERVK -408 914 1 6 892 3490 164 24 29 chr4 40364024 40364646 -115265474 + RLTR14-int LTR ERV1 70 688 -4629 6 892 2833 142 51 8 chr4 40364642 40365110 -115265010 + RLTR14-int LTR ERV1 1034 1521 -3796 6 892 555 162 0 0 chr4 40365110 40365209 -115264911 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 892 39 22 0 0 chr4 40365236 40365282 -115264838 + AT_rich Low_complexity Low_complexity 1 46 0 6 892 255 212 83 92 chr4 40365326 40365435 -115264685 + Lx8 LINE L1 6830 6937 -536 6 892 391 237 65 0 chr4 40365482 40365575 -115264545 - MTD LTR MaLR -62 357 259 6 892 248 286 8 164 chr4 40365618 40365752 -115264368 + Lx9 LINE L1 7244 7356 -288 6 892 635 292 19 24 chr4 40365754 40365961 -115264159 - MTD LTR MaLR -208 211 6 6 892 791 275 57 36 chr4 40365968 40366247 -115263873 + Lx8 LINE L1 6941 7225 -248 6 892 2165 129 70 9 chr4 40366348 40366692 -115263428 + ORR1B2 LTR MaLR 1 365 -2 6 892 6102 148 107 57 chr4 40366701 40367946 -115262174 + ORR1B2-int LTR MaLR 26 1318 -191 6 892 2502 101 0 0 chr4 40367946 40368273 -115261847 - ORR1A2 LTR MaLR 0 327 1 6 892 6102 148 107 57 chr4 40368273 40368440 -115261680 + ORR1B2-int LTR MaLR 1319 1509 0 6 892 2118 168 25 3 chr4 40368440 40368799 -115261321 + ORR1B2 LTR MaLR 1 367 0 6 892 1710 217 174 21 chr4 40368920 40369311 -115260809 + RMER20B LTR ERVK 10 477 -150 6 892 351 0 0 0 chr4 40369311 40369350 -115260770 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 892 1710 217 174 21 chr4 40369350 40369471 -115260649 + RMER20B LTR ERVK 478 600 -27 6 892 326 227 67 11 chr4 40369509 40369598 -115260522 - MLT1H2 LTR MaLR -311 178 85 6 892 249 21 19 77 chr4 40370093 40370145 -115259975 + (TTG)n Simple_repeat Simple_repeat 2 50 0 6 111 1203 49 7 0 chr4 40370145 40370288 -115259832 - B1_Mm SINE Alu -3 144 1 6 893 22 0 0 0 chr4 40370290 40370312 -115259808 + AT_rich Low_complexity Low_complexity 1 22 0 6 893 2829 29 6 175 chr4 40371474 40371943 -115258177 - RLTR10 LTR ERVK 0 390 1 6 893 9003 14 1 1 chr4 40371945 40372940 -115257180 - RLTR10-int LTR ERVK -3 1984 990 6 893 8391 26 0 0 chr4 40373019 40373967 -115256153 - RLTR10-int LTR ERVK -999 988 41 6 893 2496 29 6 176 chr4 40373979 40374446 -115255674 - RLTR10 LTR ERVK -2 388 1 6 893 569 262 7 7 chr4 40375342 40375488 -115254632 + B1F SINE Alu 3 148 -1 6 893 226 100 0 0 chr4 40375941 40375971 -115254149 + L1_Mm LINE L1 5563 5592 -291 6 893 4394 76 5 0 chr4 40375967 40376534 -115253586 - L1_Mm LINE L1 -75 5808 5239 6 893 5270 104 8 1 chr4 40376531 40377280 -115252840 + L1_Mm LINE L1 4488 5241 -642 6 893 6792 169 41 9 chr4 40377277 40378789 -115251331 - Lx7 LINE L1 -1508 6188 4623 6 893 1320 237 60 9 chr4 40379042 40379374 -115250746 + ORR1D1 LTR MaLR 20 368 -6 6 893 345 278 112 56 chr4 40379702 40379862 -115250258 - MER20 DNA MER1_type -37 182 14 6 893 325 353 7 0 chr4 40379925 40380061 -115250059 - MIR SINE MIR -52 210 74 6 893 183 42 0 0 chr4 40380151 40380175 -115249945 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 893 357 221 26 0 chr4 40380272 40380349 -115249771 + ID4 SINE ID 3 81 -2 6 893 663 264 114 21 chr4 40380471 40380796 -115249324 + ORR1E LTR MaLR 1 355 -4 6 893 22 0 0 0 chr4 40380898 40380920 -115249200 + AT_rich Low_complexity Low_complexity 1 22 0 6 893 1658 202 99 5 chr4 40381058 40381441 -115248679 + MTD LTR MaLR 1 419 0 6 893 495 246 76 0 chr4 40381539 40381657 -115248463 - PB1 SINE Alu 0 127 1 6 893 267 313 24 0 chr4 40382180 40382263 -115247857 - MLT1D LTR MaLR -40 465 381 6 893 213 39 0 0 chr4 40382410 40382436 -115247684 + (TATG)n Simple_repeat Simple_repeat 1 26 0 6 893 438 20 0 0 chr4 40382470 40382521 -115247599 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 893 252 0 0 0 chr4 40382521 40382548 -115247572 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 893 381 214 29 0 chr4 40382549 40382619 -115247501 - RSINE1 SINE B4 -41 124 53 6 893 1278 195 40 75 chr4 40383595 40383967 -115246153 - RLTR10D LTR ERVK 0 359 1 6 893 2257 150 22 11 chr4 40383967 40384338 -115245782 - IAP-d-int LTR ERVK 0 6542 6168 6 893 2446 231 3 15 chr4 40384387 40384980 -115245140 - IAP-d-int LTR ERVK -483 6059 5474 6 893 1566 274 20 9 chr4 40384968 40385414 -115244706 - IAP-d-int LTR ERVK -1366 5176 4726 6 893 3089 31 7 81 chr4 40385414 40385835 -115244285 - RLTR10 LTR ERVK 0 390 1 6 893 8876 23 0 1 chr4 40385837 40386831 -115243289 - RLTR10-int LTR ERVK -3 1984 992 6 893 661 320 74 20 chr4 40386908 40387300 -115242820 - IAP-d-int LTR ERVK -5392 1150 738 6 893 8242 41 1 25 chr4 40387354 40388362 -115241758 - RLTR10-int LTR ERVK -993 994 11 6 893 330 75 0 19 chr4 40388362 40388416 -115241704 - RLTR10-int LTR ERVK -1932 55 3 6 893 2700 39 7 81 chr4 40388420 40388839 -115241281 - RLTR10 LTR ERVK -2 388 1 6 893 5249 265 16 19 chr4 40388839 40390427 -115239693 - IAP-d-int LTR ERVK -1811 4731 3148 6 893 606 187 14 61 chr4 40390451 40390599 -115239521 - IAP-d-int LTR ERVK -6401 141 1 6 893 1267 189 43 78 chr4 40390599 40390971 -115239149 - RLTR10D LTR ERVK 0 359 1 6 893 180 0 0 0 chr4 40390993 40391013 -115239107 + (T)n Simple_repeat Simple_repeat 1 20 0 6 893 354 107 0 0 chr4 40391179 40391235 -115238885 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 893 622 301 139 10 chr4 40391377 40391766 -115238354 + Charlie7 DNA MER1_type 280 718 -1894 6 893 2298 106 16 6 chr4 40392071 40392394 -115237726 - ORR1A3 LTR MaLR 0 326 1 6 893 501 292 0 8 chr4 40392647 40392768 -115237352 - B1_Mus2 SINE Alu -27 120 1 6 893 357 190 117 29 chr4 40392840 40392943 -115237177 - Lx5 LINE L1 0 7050 6939 6 893 537 258 166 28 chr4 40393625 40393915 -115236205 - L1_Rod LINE L1 -81 5766 5457 6 893 4181 80 0 13 chr4 40394188 40394744 -115235376 - L1Md_F2 LINE L1 0 6582 6034 6 893 540 243 213 64 chr4 40395276 40395637 -115234483 - MTD LTR MaLR 0 419 5 6 893 1720 212 17 17 chr4 40395998 40396349 -115233771 + Lx5 LINE L1 6695 7045 -5 6 893 356 270 89 44 chr4 40396518 40396743 -115233377 + L1MA8 LINE L1 5998 6232 -59 6 893 21 0 0 0 chr4 40397859 40397880 -115232240 + AT_rich Low_complexity Low_complexity 1 21 0 6 893 488 266 202 0 chr4 40398205 40398378 -115231742 + MER3 DNA MER1_type 1 208 -1 6 893 295 350 30 10 chr4 40398434 40398535 -115231585 + LTR86C LTR ERVL 69 171 -450 6 893 254 271 31 20 chr4 40398653 40398751 -115231369 + LTR86C LTR ERVL 349 447 -174 6 893 749 224 7 20 chr4 40398816 40398827 -115231293 - B1_Mur1 SINE Alu -4 145 137 6 893 231 36 0 0 chr4 40398827 40398855 -115231265 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 893 749 224 7 20 chr4 40398855 40398989 -115231131 - B1_Mur1 SINE Alu -13 136 2 6 893 734 275 60 17 chr4 40399259 40399492 -115230628 + B4A SINE B4 42 284 -8 6 893 21 0 0 0 chr4 40399559 40399580 -115230540 + AT_rich Low_complexity Low_complexity 1 21 0 6 893 418 309 174 21 chr4 40399589 40399830 -115230290 + L2 LINE L2 1795 2083 -1336 6 893 254 87 0 21 chr4 40399830 40399877 -115230243 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 6 893 442 252 37 0 chr4 40399879 40399986 -115230134 - PB1D7 SINE Alu -9 111 1 6 893 418 309 174 21 chr4 40399986 40400115 -115230005 + L2 LINE L2 2084 2222 -1197 6 893 771 258 93 7 chr4 40400222 40400511 -115229609 - L1M3 LINE L1 -731 5581 5268 6 893 1911 149 22 47 chr4 40400511 40400870 -115229250 - ORR1C1 LTR MaLR 0 378 29 6 893 3299 282 130 78 chr4 40400870 40401944 -115228176 - L1M3 LINE L1 -875 5265 4080 6 893 1232 54 0 0 chr4 40401944 40402091 -115228029 + B1_Mus1 SINE Alu 2 148 0 6 893 3299 282 130 78 chr4 40402091 40402864 -115227256 - L1M3 LINE L1 -2061 4079 3351 6 893 1096 69 0 40 chr4 40402864 40403015 -115227105 + B1_Mus2 SINE Alu 2 146 -1 6 893 3299 282 130 78 chr4 40403015 40403657 -115226463 - L1M3 LINE L1 -2790 3350 2646 6 893 266 296 91 0 chr4 40404256 40404344 -115225776 + MIRm SINE MIR 165 260 -16 6 893 1377 219 30 33 chr4 40405288 40405497 -115224623 - MTD LTR MaLR 0 419 204 6 893 2459 36 13 3 chr4 40405497 40405799 -115224321 - L1Md_F2 LINE L1 -1 6581 6277 6 893 1377 219 30 33 chr4 40405799 40405920 -115224200 - MTD LTR MaLR -216 203 90 6 893 573 184 57 32 chr4 40406040 40406197 -115223923 - RMER19C LTR ERVK -450 161 1 6 893 371 194 85 11 chr4 40406199 40406279 -115223841 - MTD LTR MaLR -318 101 19 6 893 261 0 0 0 chr4 40406279 40406308 -115223812 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 893 371 194 85 11 chr4 40406308 40406321 -115223799 - MTD LTR MaLR -401 18 2 6 893 806 297 70 0 chr4 40406390 40406649 -115223471 - B4A SINE B4 -14 278 2 6 893 3232 182 69 18 chr4 40406976 40407660 -115222460 + Lx6 LINE L1 1600 2318 -3562 6 893 4411 20 0 12 chr4 40407666 40408165 -115221955 + MT2_Mm LTR ERVL 1 493 0 6 893 48559 18 1 0 chr4 40408165 40413514 -115216606 + MERVL-int LTR ERVL 1 5355 -130 6 893 334 191 46 35 chr4 40413518 40413605 -115216515 + ORR1A3-int LTR MaLR 553 640 -1323 6 893 309 26 0 0 chr4 40413605 40413643 -115216477 + MERVL-int LTR ERVL 5448 5485 0 6 893 4426 18 0 12 chr4 40413643 40414142 -115215978 + MT2_Mm LTR ERVL 1 493 0 6 893 3450 170 14 17 chr4 40414143 40414838 -115215282 + Lx6 LINE L1 2311 3003 -2874 6 893 747 185 206 12 chr4 40414842 40415012 -115215108 + B3 SINE B2 5 207 -9 6 893 10443 152 46 30 chr4 40415016 40416141 -115213979 + Lx6 LINE L1 3864 4990 -887 6 893 387 0 0 0 chr4 40416141 40416184 -115213936 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 6 893 1138 65 0 0 chr4 40416184 40416322 -115213798 - B1_Mus1 SINE Alu -9 139 2 6 893 10443 175 53 41 chr4 40416322 40417638 -115212482 + Lx6 LINE L1 4991 6363 -687 6 893 1776 258 171 9 chr4 40417622 40418207 -115211913 + Lx6 LINE L1 6485 7460 0 6 893 256 309 18 35 chr4 40418306 40418420 -115211700 - L2 LINE L2 -945 2474 2363 6 893 216 0 0 0 chr4 40418708 40418732 -115211388 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 893 234 208 19 0 chr4 40420471 40420524 -115209596 + CT-rich Low_complexity Low_complexity 3 56 0 6 893 765 85 0 0 chr4 40420706 40420812 -115209308 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 893 292 119 34 0 chr4 40422911 40422970 -115207150 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 893 495 197 27 62 chr4 40424963 40425109 -115205011 + ID_B1 SINE B4 84 224 0 7 893 227 211 42 14 chr4 40427142 40427214 -115202906 + T-rich Low_complexity Low_complexity 2 75 0 7 893 777 200 7 13 chr4 40427373 40427525 -115202595 - RSINE1 SINE B4 -13 152 2 7 893 213 118 0 56 chr4 40428564 40428618 -115201502 + (CGTG)n Simple_repeat Simple_repeat 2 52 0 7 893 416 301 41 62 chr4 40428699 40428844 -115201276 - MTEa LTR MaLR -235 144 3 7 893 252 179 29 29 chr4 40429214 40429283 -115200837 + L1M2 LINE L1 5759 5827 -464 7 893 368 253 87 93 chr4 40429656 40429817 -115200303 + RSINE1 SINE B4 6 165 0 7 893 1891 288 84 33 chr4 40429844 40430454 -115199666 + L1MA7 LINE L1 5159 5797 -494 7 893 531 90 0 0 chr4 40430454 40430532 -115199588 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 893 1891 269 106 42 chr4 40430532 40430990 -115199130 + L1MA7 LINE L1 5798 6291 0 7 893 311 194 0 43 chr4 40431940 40432010 -115198110 - MTE2b LTR MaLR -310 69 3 7 893 296 227 41 0 chr4 40432751 40432848 -115197272 + A-rich Low_complexity Low_complexity 3 103 0 7 893 204 375 0 0 chr4 40432863 40432927 -115197193 + L2b LINE L2 3303 3366 -9 7 893 23 0 0 0 chr4 40433121 40433144 -115196976 + AT_rich Low_complexity Low_complexity 1 23 0 7 893 228 255 0 0 chr4 40433345 40433396 -115196724 - B4A SINE B4 -228 64 14 7 893 414 224 190 20 chr4 40434181 40434381 -115195739 - L1MC4 LINE L1 -805 7237 7004 7 893 295 307 17 62 chr4 40434429 40434606 -115195514 - L1MC4 LINE L1 -999 7043 6875 7 893 407 270 162 102 chr4 40434584 40435141 -115194979 + L1MC4 LINE L1 7281 7870 -172 7 893 432 0 0 0 chr4 40435162 40435210 -115194910 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 893 252 312 0 27 chr4 40435225 40435337 -115194783 + MLT1A1 LTR MaLR 26 134 -274 7 893 1584 227 34 0 chr4 40435359 40435746 -115194374 + MTD LTR MaLR 1 400 -19 7 893 449 177 21 10 chr4 40435832 40435929 -115194191 + MLT1A1 LTR MaLR 311 408 0 7 893 348 24 0 0 chr4 40436116 40436157 -115193963 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 7 893 243 0 0 0 chr4 40436159 40436186 -115193934 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 893 1121 85 0 0 chr4 40436190 40436331 -115193789 - B1_Mus1 SINE Alu -7 141 1 7 893 719 236 9 81 chr4 40436338 40436559 -115193561 - Lx9 LINE L1 -451 7193 6989 7 893 424 216 0 0 chr4 40436559 40436647 -115193473 + Lx9 LINE L1 7384 7471 -173 7 893 276 350 112 14 chr4 40436927 40437150 -115192970 - LTR16C LTR ERVL -14 475 231 7 893 646 142 104 0 chr4 40437354 40437488 -115192632 - URR1B DNA MER1_type -10 215 68 7 893 534 250 65 19 chr4 40437522 40437738 -115192382 + L1MC1 LINE L1 3069 3294 -2852 7 893 456 209 47 9 chr4 40437748 40437854 -115192266 + PB1D7 SINE Alu 1 110 -10 7 893 380 235 127 42 chr4 40438064 40438206 -115191914 + RSINE1 SINE B4 12 165 0 7 893 281 269 51 51 chr4 40438268 40438366 -115191754 + B4A SINE B4 195 292 0 7 893 294 237 110 13 chr4 40438426 40438580 -115191540 + L1MC1 LINE L1 5289 5457 -887 7 893 452 256 66 0 chr4 40438609 40438730 -115191390 - B3 SINE B2 -87 129 1 7 893 699 336 61 10 chr4 40438731 40439122 -115190998 + L1MC1 LINE L1 5922 6332 -1 7 893 180 0 0 0 chr4 40439280 40439300 -115190820 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 7 893 504 59 0 0 chr4 40439337 40439405 -115190715 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 893 269 330 34 0 chr4 40439471 40439559 -115190561 + RSINE1 SINE B4 1 91 -74 7 893 27 49 0 0 chr4 40439602 40439643 -115190477 + AT_rich Low_complexity Low_complexity 1 41 0 7 893 399 315 55 0 chr4 40439651 40439778 -115190342 + B1F2 SINE Alu 10 143 -6 7 893 2379 93 16 0 chr4 40440155 40440477 -115189643 + ORR1A2 LTR MaLR 1 327 0 7 893 252 149 0 0 chr4 40440557 40440604 -115189516 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 893 1133 225 96 50 chr4 40441253 40441637 -115188483 + MTD LTR MaLR 1 402 -17 7 893 343 253 13 0 chr4 40441625 40441700 -115188420 + RLTR20B2 LTR ERVK 26 101 -462 7 893 911 212 156 56 chr4 40441698 40441919 -115188201 + RLTR20B2 LTR ERVK 209 466 -94 7 893 432 0 0 0 chr4 40441919 40441967 -115188153 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 893 369 0 0 0 chr4 40441967 40442007 -115188113 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 893 911 212 156 56 chr4 40442007 40442104 -115188016 + RLTR20B2 LTR ERVK 467 559 -1 7 893 559 196 0 14 chr4 40442796 40442936 -115187184 + GA-rich Low_complexity Low_complexity 1 138 0 7 893 410 295 27 0 chr4 40444401 40444513 -115185607 + B1_Mur1 SINE Alu 14 128 -21 7 893 330 169 0 0 chr4 40444514 40444579 -115185541 + GA-rich Low_complexity Low_complexity 2 66 0 7 893 225 296 0 53 chr4 40444630 40444705 -115185415 + ID4_ SINE ID 3 73 -10 7 893 685 241 10 45 chr4 40445724 40445924 -115184196 - B3A SINE B2 0 198 6 7 893 21 0 0 0 chr4 40446434 40446455 -115183665 + GC_rich Low_complexity Low_complexity 1 21 0 7 893 800 40 40 0 chr4 40446722 40446846 -115183274 + (CAAAAA)n Simple_repeat Simple_repeat 3 131 0 7 893 458 255 88 31 chr4 40447286 40447480 -115182640 - MIRb SINE MIR 0 268 64 7 893 210 254 85 0 chr4 40447545 40447604 -115182516 + ID_B1 SINE B4 78 141 -83 7 893 262 169 79 63 chr4 40447554 40447617 -115182503 + B1_Mur4 SINE Alu 6 70 -80 7 893 716 243 106 44 chr4 40447707 40447982 -115182138 + RMER13A LTR ERVK 95 386 -474 7 893 411 231 29 9 chr4 40448218 40448323 -115181797 + B1_Mur1 SINE Alu 43 149 0 7 893 403 301 14 63 chr4 40449340 40449482 -115180638 + RSINE1 SINE B4 7 141 -24 7 893 432 0 0 0 chr4 40449482 40449530 -115180590 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 893 250 300 146 0 chr4 40450343 40450453 -115179667 - MIR SINE MIR -136 126 1 7 893 192 317 91 28 chr4 40450664 40450808 -115179312 - L2b LINE L2 -38 3388 3219 7 893 1180 68 0 0 chr4 40450864 40451010 -115179110 + B1_Mm SINE Alu 2 147 0 7 893 180 0 0 0 chr4 40451019 40451039 -115179081 + (A)n Simple_repeat Simple_repeat 1 20 0 7 893 186 345 60 0 chr4 40451129 40451245 -115178875 + MER5B DNA MER1_type 30 152 -26 7 893 6572 4 0 0 chr4 40451283 40451997 -115178123 + L1Md_A LINE L1 5869 6582 0 7 893 252 0 0 0 chr4 40452659 40452687 -115177433 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 893 1183 41 7 7 chr4 40452687 40452822 -115177298 - B1_Mus2 SINE Alu -10 137 2 7 893 5722 101 30 6 chr4 40453022 40453842 -115176278 + Lx LINE L1 5811 6650 -4 7 893 971 262 112 71 chr4 40453869 40454415 -115175705 + MER34A LTR ERV1 1 568 -3 7 893 231 310 0 14 chr4 40454960 40455032 -115175088 + MIRb SINE MIR 176 246 -22 7 893 21 0 0 0 chr4 40456209 40456230 -115173890 + AT_rich Low_complexity Low_complexity 1 21 0 7 893 486 88 0 0 chr4 40457827 40457895 -115172225 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 893 405 282 73 0 chr4 40457897 40458021 -115172099 - B3A SINE B2 -61 137 5 7 893 5952 184 60 6 chr4 40458054 40459475 -115170645 - Lx5 LINE L1 -6 7052 5486 7 893 781 206 0 33 chr4 40459523 40459674 -115170446 + B1_Mur2 SINE Alu 4 149 0 7 893 862 296 70 34 chr4 40459861 40460355 -115169765 - L1ME1 LINE L1 -10 6169 5657 7 893 270 310 28 0 chr4 40460688 40460759 -115169361 - ID4 SINE ID 0 83 11 7 893 207 317 108 20 chr4 40460809 40460957 -115169163 - MIRb SINE MIR -36 172 12 7 893 946 268 129 45 chr4 40461045 40461573 -115168547 - L1M2 LINE L1 -819 5324 4753 7 893 1768 146 113 7 chr4 40461574 40462156 -115167964 + RMER17B LTR ERVK 1 958 0 7 893 671 194 80 49 chr4 40462158 40462300 -115167820 + RMER17A-int LTR ERVK 3 153 -1575 7 893 504 0 0 0 chr4 40462300 40462356 -115167764 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 893 671 194 80 49 chr4 40462356 40462376 -115167744 + RMER17A-int LTR ERVK 154 170 -1558 7 893 232 262 16 0 chr4 40462453 40462514 -115167606 + L1MA6 LINE L1 6081 6142 -158 7 893 719 240 13 84 chr4 40462533 40462760 -115167360 + B4A SINE B4 57 267 -25 7 893 403 351 15 25 chr4 40463077 40463273 -115166847 + MER77 LTR ERVL 406 599 -8 7 893 894 175 116 34 chr4 40463450 40463657 -115166463 + URR1B DNA MER1_type 2 225 0 7 893 579 231 27 20 chr4 40463905 40464051 -115166069 - MIR SINE MIR -109 153 7 7 893 221 255 39 39 chr4 40464076 40464178 -115165942 - L2 LINE L2 -787 2632 2531 7 893 24 0 0 0 chr4 40464576 40464600 -115165520 + AT_rich Low_complexity Low_complexity 1 24 0 7 893 283 329 81 36 chr4 40464624 40464845 -115165275 + MIRb SINE MIR 12 242 -26 7 893 1144 140 14 10 chr4 40464877 40465086 -115165034 + URR1B DNA MER1_type 13 222 -3 7 893 292 117 0 77 chr4 40466296 40466361 -115163759 + B4A SINE B4 1 60 -232 7 893 259 233 0 48 chr4 40466428 40466491 -115163629 + B4A SINE B4 171 230 -62 7 893 370 202 105 11 chr4 40466708 40466803 -115163317 + B1_Mur1 SINE Alu 44 147 -2 7 893 336 119 0 0 chr4 40466854 40466913 -115163207 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 893 1389 194 82 19 chr4 40467297 40467613 -115162507 + ORR1D2 LTR MaLR 1 336 -34 7 893 1664 142 10 186 chr4 40467613 40468096 -115162024 - RMER10B LTR ERVL 0 398 1 7 893 2083 131 89 35 chr4 40468104 40468499 -115161621 - MTC LTR MaLR 0 421 6 7 893 21 82 0 0 chr4 40468670 40468719 -115161401 + AT_rich Low_complexity Low_complexity 1 49 0 7 893 324 0 0 0 chr4 40470165 40470201 -115159919 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 893 222 270 16 16 chr4 40471658 40471722 -115158398 - L2b LINE L2 -8 3367 3304 7 893 624 236 130 0 chr4 40472251 40472412 -115157708 + B3A SINE B2 1 182 -16 7 893 225 207 24 12 chr4 40472412 40472495 -115157625 + GA-rich Low_complexity Low_complexity 1 84 0 7 893 220 348 83 21 chr4 40473659 40473947 -115156173 + L2 LINE L2 1733 2038 -1381 8 893 3269 65 2 0 chr4 40473963 40474365 -115155755 + L1_Mus1 LINE L1 6158 6560 -7 8 893 5980 55 0 0 chr4 40474364 40475095 -115155025 + L1Md_F2 LINE L1 5851 6581 -1 8 893 530 29 15 0 chr4 40475200 40475268 -115154852 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 8 893 243 0 0 0 chr4 40475318 40475345 -115154775 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 893 399 21 0 0 chr4 40475345 40475392 -115154728 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 893 303 260 0 0 chr4 40475576 40475653 -115154467 + L2 LINE L2 2365 2441 -978 8 893 3452 58 16 4 chr4 40475746 40476231 -115153889 - RLTR44C LTR ERVK -11 491 1 8 893 16922 126 47 18 chr4 40476233 40477924 -115152196 + Lx4B LINE L1 2976 4725 -1152 8 893 1367 61 27 22 chr4 40477924 40478107 -115152013 + B2_Mm2 SINE B2 1 184 -11 8 893 16922 162 50 14 chr4 40478107 40480296 -115149824 + Lx4B LINE L1 4726 6981 -19 8 893 232 256 72 72 chr4 40480403 40480500 -115149620 + L2 LINE L2 2561 2657 -762 8 893 406 301 38 38 chr4 40481162 40481345 -115148775 - RLTR42-int LTR ERVK -4191 1331 1149 8 893 515 138 22 44 chr4 40481419 40481601 -115148519 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 8 893 729 182 0 0 chr4 40481624 40481861 -115148259 + (TG)n Simple_repeat Simple_repeat 1 237 0 8 893 633 190 0 0 chr4 40481872 40482051 -115148069 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 893 263 186 0 106 chr4 40482063 40482129 -115147991 - ID4_ SINE ID -23 60 2 8 893 202 210 58 69 chr4 40482198 40482226 -115147894 + L2 LINE L2 2807 2831 -588 8 893 324 70 0 0 chr4 40482226 40482269 -115147851 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 8 893 202 210 58 69 chr4 40482269 40482327 -115147793 + L2 LINE L2 2832 2892 -527 8 893 186 373 64 32 chr4 40483992 40484211 -115145909 - MIRb SINE MIR -15 253 28 8 893 350 264 0 0 chr4 40484791 40484863 -115145257 + BC1_Mm scRNA scRNA 4 75 -77 8 893 668 236 63 195 chr4 40484930 40485294 -115144826 - MTC LTR MaLR -101 320 5 8 893 1720 222 17 21 chr4 40486237 40486656 -115143464 + MTD LTR MaLR 2 418 -1 8 893 257 270 35 47 chr4 40487366 40487492 -115142628 - L2a LINE L2 0 3426 3247 8 893 266 355 122 25 chr4 40487570 40487923 -115142197 - L2 LINE L2 -2282 1137 751 8 893 384 160 8 165 chr4 40488281 40488325 -115141795 + ORR1C2 LTR MaLR 3 40 -334 8 893 1352 66 33 11 chr4 40488325 40488508 -115141612 - B2_Mm2 SINE B2 -4 191 5 8 893 384 160 8 165 chr4 40488508 40488590 -115141530 + ORR1C2 LTR MaLR 41 109 -265 8 893 2380 219 94 54 chr4 40488591 40488888 -115141232 + RMER1C Other Other 665 999 -343 8 893 396 0 0 0 chr4 40488888 40488932 -115141188 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 893 2380 219 94 54 chr4 40488932 40489284 -115140836 + RMER1C Other Other 1000 1340 -2 8 893 726 191 140 16 chr4 40489487 40489669 -115140451 + ORR1C2 LTR MaLR 84 288 -96 8 893 1913 135 0 6 chr4 40489669 40489989 -115140131 + ORR1A4 LTR MaLR 1 318 -11 8 893 604 137 10 0 chr4 40489992 40490094 -115140026 + ORR1A4 LTR MaLR 282 384 0 8 893 220 154 39 0 chr4 40491466 40491518 -115138602 + A-rich Low_complexity Low_complexity 2 55 0 8 893 180 0 0 0 chr4 40492335 40492355 -115137765 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 8 893 463 281 88 23 chr4 40492848 40493063 -115137057 - L1ME3A LINE L1 -40 6133 5905 8 893 528 314 6 77 chr4 40493480 40493663 -115136457 + MTEa LTR MaLR 1 170 -209 8 893 4426 45 2 0 chr4 40494132 40494643 -115135477 + RLTR1B LTR ERV1 1 512 0 8 893 313 103 44 0 chr4 40495209 40495277 -115134843 + Lx9 LINE L1 7525 7595 -49 8 893 555 181 19 0 chr4 40495675 40495780 -115134340 - PB1D9 SINE Alu -12 108 2 8 893 14519 16 0 1 chr4 40495896 40497541 -115132579 + L1Md_T LINE L1 3943 5586 -297 8 893 8349 47 0 0 chr4 40497541 40498537 -115131583 + L1Md_T LINE L1 5587 6582 0 8 893 1119 90 80 114 chr4 40498550 40498734 -115131386 + B2_Mm2 SINE B2 1 161 -34 8 893 234 0 0 0 chr4 40498734 40498760 -115131360 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 8 893 1119 90 80 114 chr4 40498760 40498776 -115131344 + B2_Mm2 SINE B2 162 192 -3 8 893 432 0 0 0 chr4 40498951 40498999 -115131121 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 8 893 465 205 0 0 chr4 40499120 40499237 -115130883 + (CA)n Simple_repeat Simple_repeat 2 118 0 8 893 1977 234 66 30 chr4 40499274 40499776 -115130344 - Lx9 LINE L1 -182 7462 6943 8 893 563 265 33 48 chr4 40500764 40500974 -115129146 - RMER5 LTR ERV1 -249 285 79 1 111 3287 339 73 62 chr4 40500993 40501982 -115128138 + RLTR4_MM-int LTR ERV1 1596 2610 -5168 2 894 257 0 30 0 chr4 40501982 40502015 -115128105 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 894 3287 339 71 55 chr4 40502015 40502740 -115127380 + RLTR4_MM-int LTR ERV1 2470 3230 -4371 2 894 1168 42 14 0 chr4 40502740 40502884 -115127236 + B1_Mus2 SINE Alu 1 146 -1 4 894 3287 339 71 55 chr4 40502884 40504640 -115125480 + RLTR4_MM-int LTR ERV1 3231 4998 -2603 2 894 3052 166 21 20 chr4 40504640 40505200 -115124920 + RLTR31_Mm LTR ERVK 1 561 0 5 894 3287 339 71 55 chr4 40505200 40505474 -115124646 + RLTR4_MM-int LTR ERV1 4999 5274 -2327 2 894 2087 175 194 25 chr4 40505907 40506392 -115123728 + RMER2 LTR ERV1 1 567 0 6 894 306 0 0 0 chr4 40506442 40506476 -115123644 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 894 9436 109 28 3 chr4 40507366 40509357 -115120763 + L1Md_F LINE L1 585 2626 -3257 8 894 2624 49 49 0 chr4 40509356 40509682 -115120438 + L1Md_F2 LINE L1 5244 5585 -298 9 894 7849 67 3 6 chr4 40509683 40510680 -115119440 + L1Md_F2 LINE L1 5587 6580 -2 9 894 27 0 0 0 chr4 40510766 40510793 -115119327 + AT_rich Low_complexity Low_complexity 1 27 0 1 894 1614 217 50 18 chr4 40510796 40511194 -115118926 - MTD LTR MaLR -8 411 1 1 894 3169 215 137 26 chr4 40512642 40513814 -115116306 - Lx7 LINE L1 -1 7695 6394 1 894 868 269 139 12 chr4 40514540 40514799 -115115321 - B4 SINE B4 0 292 1 1 894 180 217 0 0 chr4 40515467 40515513 -115114607 + GA-rich Low_complexity Low_complexity 1 46 0 1 894 237 247 71 0 chr4 40515522 40515607 -115114513 + Lx7 LINE L1 7589 7679 -17 1 894 258 186 46 2 chr4 40515639 40515730 -115114390 + L1MB3 LINE L1 6052 6147 -36 1 894 587 248 72 147 chr4 40515759 40516052 -115114068 - B4A SINE B4 -21 271 1 1 894 4446 90 16 2 chr4 40516315 40516926 -115113194 + L1_Mus3 LINE L1 6019 6638 0 1 894 23 33 0 0 chr4 40517429 40517459 -115112661 + AT_rich Low_complexity Low_complexity 1 30 0 1 894 446 49 16 0 chr4 40518119 40518180 -115111940 + (GGTTG)n Simple_repeat Simple_repeat 2 63 0 2 894 769 234 81 0 chr4 40518180 40518377 -115111743 - ID_B1 SINE B4 -10 214 2 2 894 653 256 11 48 chr4 40519536 40519725 -115110395 + B3A SINE B2 1 182 -16 2 894 324 0 0 0 chr4 40521112 40521148 -115108972 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 894 549 311 46 73 chr4 40521201 40521254 -115108866 + MER2 DNA MER2_type 89 131 -214 2 894 1005 118 174 75 chr4 40521254 40521455 -115108665 - URR1B DNA MER1_type -4 221 1 2 894 549 311 46 73 chr4 40521455 40521661 -115108459 + MER2 DNA MER2_type 132 341 -4 2 894 250 262 75 0 chr4 40521797 40521877 -115108243 - MIR SINE MIR -105 157 72 2 894 975 251 30 26 chr4 40522429 40522695 -115107425 - B4A SINE B4 -2 290 24 2 894 350 293 82 25 chr4 40522817 40523013 -115107107 + L1_Rod LINE L1 5230 5436 -444 2 894 1927 148 70 51 chr4 40523014 40523240 -115106880 + MTC LTR MaLR 1 216 -205 2 894 2345 74 52 0 chr4 40523240 40523549 -115106571 + ORR1A2 LTR MaLR 3 327 0 3 894 1927 148 70 51 chr4 40523549 40523735 -115106385 + MTC LTR MaLR 217 421 0 2 894 663 267 70 0 chr4 40523766 40523938 -115106182 + B3 SINE B2 28 211 -5 3 894 432 269 137 51 chr4 40523941 40524052 -115106068 + L1_Rod LINE L1 5435 5552 -328 2 894 3279 60 12 2 chr4 40524052 40524455 -115105665 + MTB_Mm LTR MaLR 1 407 0 3 894 432 262 139 54 chr4 40524455 40524608 -115105512 + L1_Rod LINE L1 5525 5731 -149 2 894 378 0 0 0 chr4 40524927 40524969 -115105151 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 894 927 235 51 0 chr4 40525062 40525258 -115104862 + B3 SINE B2 8 213 -3 3 894 1032 103 34 6 chr4 40525380 40525563 -115104557 + ORR1B1 LTR MaLR 139 394 0 3 894 470 273 101 11 chr4 40525563 40525741 -115104379 + MTEb LTR MaLR 70 263 -116 3 894 660 292 45 0 chr4 40525980 40526182 -115103938 + B3 SINE B2 6 216 0 3 894 189 0 0 0 chr4 40526182 40526203 -115103917 + (A)n Simple_repeat Simple_repeat 1 21 0 3 894 246 270 22 0 chr4 40526224 40526313 -115103807 + L1MA5 LINE L1 6210 6300 0 3 894 231 218 109 0 chr4 40526349 40526404 -115103716 + PB1D10 SINE Alu 36 96 -21 4 894 381 317 84 77 chr4 40526494 40526781 -115103339 + B4 SINE B4 2 290 -2 4 894 293 273 0 25 chr4 40526955 40527034 -115103086 - ID_B1 SINE B4 0 224 148 4 894 275 273 39 0 chr4 40526966 40527043 -115103077 - B1F SINE Alu -9 140 61 4 894 302 311 56 0 chr4 40527070 40527160 -115102960 - ID_B1 SINE B4 -26 198 104 4 894 537 259 6 75 chr4 40527235 40527394 -115102726 - B4A SINE B4 0 292 145 4 894 1057 157 48 10 chr4 40528216 40528422 -115101698 + B3 SINE B2 1 214 -2 4 894 219 135 27 0 chr4 40528566 40528603 -115101517 - ID4_ SINE ID -41 42 5 4 894 385 216 14 0 chr4 40528697 40528771 -115101349 + PB1D10 SINE Alu 11 85 -32 4 894 350 259 26 53 chr4 40528771 40528811 -115101309 + ID_B1 SINE B4 92 202 -22 4 894 1001 269 222 5 chr4 40528965 40529380 -115100740 + MLT2B3 LTR ERVL 1 505 -49 5 894 386 199 48 28 chr4 40529380 40529525 -115100595 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 5 894 261 0 0 0 chr4 40529525 40529554 -115100566 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 5 894 912 316 48 38 chr4 40530639 40531165 -115098955 + MT2A LTR ERVL 1 531 -2 5 894 500 31 0 0 chr4 40531295 40531360 -115098760 - L1Md_F2 LINE L1 -10 6572 6508 5 894 297 0 0 0 chr4 40532663 40532696 -115097424 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 894 297 0 0 0 chr4 40533837 40533870 -115096250 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 894 333 0 0 0 chr4 40533872 40533909 -115096211 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 894 721 250 57 67 chr4 40533916 40534126 -115095994 - B4 SINE B4 -34 258 51 5 894 857 268 46 54 chr4 40534682 40534942 -115095178 + B4 SINE B4 1 258 -34 5 894 536 0 16 0 chr4 40534949 40535013 -115095107 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 894 189 0 0 0 chr4 40535015 40535036 -115095084 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 894 270 320 0 0 chr4 40535342 40535445 -115094675 + PB1D10 SINE Alu 2 104 -13 6 894 180 0 0 0 chr4 40535445 40535465 -115094655 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 894 2079 127 28 62 chr4 40535869 40536223 -115093897 + ORR1A1 LTR MaLR 1 342 -4 6 894 234 220 0 0 chr4 40536683 40536742 -115093378 + (CCA)n Simple_repeat Simple_repeat 1 59 0 6 894 953 275 50 39 chr4 40536943 40537102 -115093018 + Lx7 LINE L1 6959 7115 -581 6 894 7386 31 0 1 chr4 40537102 40537949 -115092171 + L1Md_F2 LINE L1 5736 6581 -1 6 894 953 275 50 39 chr4 40537949 40538149 -115091971 + Lx7 LINE L1 7116 7322 -374 6 894 234 0 0 0 chr4 40538152 40538178 -115091942 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 894 362 252 45 45 chr4 40538323 40538435 -115091685 + PB1D10 SINE Alu 3 114 -3 6 894 345 44 0 0 chr4 40538625 40538650 -115091470 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 894 369 0 0 0 chr4 40538650 40538691 -115091429 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 894 345 44 0 0 chr4 40538691 40538710 -115091410 + (TA)n Simple_repeat Simple_repeat 1 19 0 7 894 1150 260 68 78 chr4 40539849 40540350 -115089770 + RMER20A LTR ERVK 11 506 -10 7 894 633 109 0 10 chr4 40540348 40540450 -115089670 + B1_Mur4 SINE Alu 50 150 0 7 894 710 247 51 6 chr4 40540733 40540908 -115089212 + B3 SINE B2 1 183 -33 7 894 505 314 116 39 chr4 40540957 40541292 -115088828 + RLTR9A LTR ERVK 8 368 0 7 894 516 238 147 0 chr4 40541374 40541517 -115088603 + B3A SINE B2 1 164 -34 7 894 195 69 0 0 chr4 40541528 40541557 -115088563 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 7 894 1453 86 0 10 chr4 40541589 40541790 -115088330 - L1Md_F2 LINE L1 -12 6570 6372 7 894 2111 77 28 16 chr4 40541790 40542108 -115088012 - RLTRETN_Mm LTR ERVK 0 322 1 8 894 10139 40 20 17 chr4 40542108 40543369 -115086751 - MMETn-int LTR ERVK 0 4844 3580 8 894 36140 36 1 0 chr4 40543370 40549876 -115080244 + L1Md_T LINE L1 1 5589 -297 8 894 9146 6 0 0 chr4 40549876 40550898 -115079222 + L1Md_T LINE L1 5590 6585 0 8 894 1782 40 22 18 chr4 40550900 40551126 -115078994 - ETnERV-int LTR ERVK -1171 2143 1917 8 894 26049 51 4 8 chr4 40551123 40555234 -115074886 - MMETn-int LTR ERVK -2124 5282 1 8 894 2131 80 25 16 chr4 40555234 40555553 -115074567 - RLTRETN_Mm LTR ERVK 0 322 1 8 894 1976 35 0 0 chr4 40555553 40555780 -115074340 - L1Md_F2 LINE L1 -205 6377 6151 8 894 2668 47 9 17 chr4 40555780 40556127 -115073993 + L1Md_F2 LINE L1 6239 6582 0 8 894 1709 204 59 14 chr4 40556260 40556698 -115073422 + RLTR11A2 LTR ERVK 10 467 -60 8 894 516 16 0 0 chr4 40556873 40556934 -115073186 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 894 467 278 133 28 chr4 40556970 40557218 -115072902 - B4A SINE B4 -18 274 1 8 894 225 297 248 8 chr4 40557267 40557396 -115072724 - RSINE1 SINE B4 -4 161 2 8 894 823 238 32 14 chr4 40557411 40557628 -115072492 - B4 SINE B4 -68 224 4 9 894 715 173 105 0 chr4 40557658 40557791 -115072329 + B1_Mus2 SINE Alu 1 147 0 9 894 250 287 97 27 chr4 40557869 40558055 -115072065 - Charlie7 DNA MER1_type -761 1851 1653 9 894 231 322 11 0 chr4 40558084 40558171 -115071949 + B3A SINE B2 25 112 -86 9 894 198 118 0 0 chr4 40558219 40558253 -115071867 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 894 652 216 73 12 chr4 40558280 40558444 -115071676 - B3A SINE B2 -24 174 1 9 894 300 319 131 34 chr4 40558478 40558799 -115071321 - Charlie7 DNA MER1_type -1036 1576 1225 9 894 2294 139 48 2 chr4 40559300 40559695 -115070425 - MTC LTR MaLR -8 413 1 9 894 432 0 0 0 chr4 40559885 40559933 -115070187 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 9 894 462 295 31 0 chr4 40559950 40560079 -115070041 - B1F2 SINE Alu -15 134 2 9 894 764 299 38 24 chr4 40560529 40560820 -115069300 - L1MA4 LINE L1 -373 5927 5633 9 894 858 62 0 0 chr4 40560845 40560958 -115069162 + (TTC)n Simple_repeat Simple_repeat 2 114 0 1 894 6028 86 7 12 chr4 40560960 40561811 -115068309 - L1_Mus3 LINE L1 -9 6629 5783 1 894 29819 105 62 4 chr4 40561814 40563214 -115066906 - L1_Mus3 LINE L1 -2 6636 5157 1 894 6429 40 0 1 chr4 40563214 40563971 -115066149 + L1_Mus1 LINE L1 5812 6567 0 1 894 29819 128 14 13 chr4 40563971 40568754 -115061366 - L1_Mus3 LINE L1 -727 5156 362 1 894 1576 219 67 86 chr4 40568754 40569229 -115060891 - RMER19C LTR ERVK -8 603 138 1 894 738 238 144 66 chr4 40569268 40569566 -115060554 - L1_Rod LINE L1 -285 5562 5225 1 894 1067 214 14 5 chr4 40569566 40569773 -115060347 - B3 SINE B2 -6 210 2 1 894 738 238 144 66 chr4 40569773 40569911 -115060209 - L1_Rod LINE L1 -623 5224 5092 1 894 511 240 16 8 chr4 40570345 40570467 -115059653 + B1F SINE Alu 12 134 -15 1 894 344 22 0 22 chr4 40570477 40570523 -115059597 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 894 448 244 145 8 chr4 40570544 40570668 -115059452 + B1_Mur2 SINE Alu 2 142 -7 1 894 477 0 0 0 chr4 40570669 40570722 -115059398 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1 894 779 161 41 27 chr4 40570850 40570864 -115059256 - B1_Mur2 SINE Alu 0 149 137 1 894 272 27 0 26 chr4 40570864 40570902 -115059218 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 894 779 161 41 27 chr4 40570902 40571034 -115059086 - B1_Mur2 SINE Alu -13 136 1 1 894 406 243 27 7 chr4 40571067 40571216 -115058904 + (CATA)n Simple_repeat Simple_repeat 4 155 0 1 894 375 312 49 67 chr4 40571405 40571690 -115058430 + RLTR26 LTR ERVK 187 466 -176 1 894 281 349 0 0 chr4 40572370 40572453 -115057667 - ID4 SINE ID 0 83 1 1 894 321 276 113 7 chr4 40572515 40572657 -115057463 - MLT1B LTR MaLR -223 167 11 1 894 1008 119 0 64 chr4 40573889 40573995 -115056125 + B2_Mm2 SINE B2 2 107 -88 1 894 1231 75 63 6 chr4 40573995 40574170 -115055950 - B2_Mm1t SINE B2 -7 186 2 1 894 1008 119 0 64 chr4 40574170 40574234 -115055886 + B2_Mm2 SINE B2 108 161 -34 1 894 207 69 0 0 chr4 40574234 40574263 -115055857 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 894 1018 90 0 0 chr4 40574263 40574408 -115055712 - B2_Mm2 SINE B2 -49 146 2 1 894 2418 32 0 0 chr4 40574463 40574743 -115055377 + L1Md_A LINE L1 6303 6582 0 1 894 673 322 53 16 chr4 40574744 40575063 -115055057 + Tigger6b DNA MER2_type 2 332 -1265 1 894 293 341 70 50 chr4 40575071 40575312 -115054808 + MER44A DNA MER2_type 4 249 -90 1 894 478 209 95 0 chr4 40575393 40575498 -115054622 + B3 SINE B2 2 116 -100 1 894 1409 167 86 94 chr4 40575500 40575851 -115054269 - ORR1B1 LTR MaLR 0 394 47 1 894 327 224 79 0 chr4 40575873 40575949 -115054171 + B3 SINE B2 123 204 -12 1 894 987 46 0 0 chr4 40575958 40576088 -115054032 + B1_Mus2 SINE Alu 16 145 -2 1 894 189 0 0 0 chr4 40576088 40576109 -115054011 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 894 11596 128 31 15 chr4 40576226 40577545 -115052575 + Lx5 LINE L1 3662 5019 -858 1 894 1166 54 14 0 chr4 40577545 40577693 -115052427 + B1_Mur4 SINE Alu 1 150 0 1 894 11596 128 31 15 chr4 40577693 40578234 -115051886 + Lx5 LINE L1 5020 5551 -326 1 894 1530 114 49 0 chr4 40578235 40578481 -115051639 - ORR1A2 LTR MaLR -1 326 69 1 894 7865 155 34 28 chr4 40578481 40579859 -115050261 + Lx5 LINE L1 5664 7050 0 1 894 22 0 0 0 chr4 40579920 40579942 -115050178 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 608 229 207 59 chr4 40579942 40580174 -115049946 - MTEb LTR MaLR -83 296 31 1 894 296 232 0 14 chr4 40580192 40580262 -115049858 + MER44A DNA MER2_type 267 335 -4 1 894 257 203 132 26 chr4 40580317 40580393 -115049727 + RLTR25B LTR ERVK 426 509 -519 1 894 763 50 0 0 chr4 40580335 40580435 -115049685 + B1_Mm SINE Alu 47 146 -1 1 894 756 0 0 0 chr4 40580454 40580538 -115049582 + (GGAAA)n Simple_repeat Simple_repeat 3 86 0 1 894 530 269 85 104 chr4 40580539 40580809 -115049311 + Tigger6b DNA MER2_type 452 716 -881 1 894 7022 139 29 6 chr4 40580913 40582062 -115048058 - Lx LINE L1 -931 5635 4459 1 894 6590 97 59 16 chr4 40582057 40582973 -115047147 + Lx LINE L1 5603 6568 -86 1 894 3681 26 28 2 chr4 40582973 40583398 -115046722 - RLTR10C LTR ERVK 0 436 1 1 894 6590 97 59 16 chr4 40583398 40583466 -115046654 + Lx LINE L1 6569 6629 -25 1 894 189 0 0 0 chr4 40583467 40583488 -115046632 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1 894 423 339 29 0 chr4 40584638 40584809 -115045311 + L4 LINE RTE 596 771 -1258 1 894 333 0 0 0 chr4 40584875 40584912 -115045208 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 894 451 223 159 52 chr4 40584961 40585054 -115045066 - Lx8 LINE L1 -6 7467 7355 1 894 1353 66 0 0 chr4 40585054 40585436 -115044684 + (CA)n Simple_repeat Simple_repeat 1 382 0 1 894 451 223 159 52 chr4 40585436 40585457 -115044663 - Lx8 LINE L1 -119 7354 7332 1 894 369 0 0 0 chr4 40585457 40585498 -115044622 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 894 451 223 159 52 chr4 40585498 40585610 -115044510 - Lx8 LINE L1 -142 7331 7213 1 894 858 247 139 7 chr4 40585719 40586021 -115044099 + L1_Mur3 LINE L1 4921 5262 -618 1 894 23 0 0 0 chr4 40586034 40586057 -115044063 + AT_rich Low_complexity Low_complexity 1 23 0 1 894 1030 238 48 38 chr4 40586139 40586432 -115043688 - L1_Mur3 LINE L1 -202 5678 5383 1 894 300 288 12 0 chr4 40586445 40586525 -115043595 + ID4_ SINE ID 3 83 0 1 894 22 0 0 0 chr4 40587087 40587109 -115043011 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 1508 77 41 5 chr4 40587499 40587720 -115042400 + ORR1A2 LTR MaLR 1 229 -98 1 894 774 240 94 17 chr4 40587731 40587964 -115042156 + RMER1C Other Other 1091 1341 -1 1 894 965 208 64 5 chr4 40588082 40588285 -115041835 + B3 SINE B2 2 216 0 1 894 23 0 0 0 chr4 40588658 40588681 -115041439 + GC_rich Low_complexity Low_complexity 1 23 0 1 894 457 234 123 6 chr4 40588695 40588858 -115041262 + MLT2B4 LTR ERVL 309 490 -66 1 894 842 240 57 9 chr4 40588921 40589148 -115040972 + L1MB3 LINE L1 5782 6019 -164 1 894 307 238 61 6 chr4 40589148 40589268 -115040852 - B4 SINE B4 -37 128 1 1 894 1541 178 39 88 chr4 40589666 40589827 -115040293 + ORR1D1 LTR MaLR 2 143 -231 1 894 1224 34 0 7 chr4 40589827 40589974 -115040146 - B1_Mus1 SINE Alu -1 147 2 1 894 1541 178 39 88 chr4 40589974 40590200 -115039920 + ORR1D1 LTR MaLR 144 370 -4 1 894 459 52 0 0 chr4 40590393 40590451 -115039669 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 894 259 316 98 39 chr4 40590760 40590994 -115039126 + MamGypLTR1b LTR Gypsy 118 365 -417 1 894 552 215 7 15 chr4 40591223 40591368 -115038752 + L1MA6 LINE L1 5354 5490 -810 1 894 455 234 92 15 chr4 40591443 40591573 -115038547 + B1F SINE Alu 8 147 -2 1 894 225 241 46 46 chr4 40591589 40591676 -115038444 + L1MA6 LINE L1 5475 5561 -751 1 894 1008 252 45 8 chr4 40591690 40591958 -115038162 + B4A SINE B4 2 279 -13 1 894 812 290 85 39 chr4 40592027 40592204 -115037916 + L1MA6 LINE L1 5782 5965 -335 1 894 3757 136 101 15 chr4 40592204 40592867 -115037253 + RMER6D LTR ERVK 1 720 0 1 894 812 290 85 39 chr4 40592867 40593123 -115036997 + L1MA6 LINE L1 5966 6235 -65 1 894 1049 105 7 0 chr4 40593285 40593428 -115036692 + B1_Mus2 SINE Alu 2 145 -2 1 894 223 182 0 43 chr4 40593441 40593487 -115036633 + A-rich Low_complexity Low_complexity 2 45 0 1 894 395 247 31 0 chr4 40593500 40593597 -115036523 + PB1D10 SINE Alu 13 112 -5 1 894 261 0 0 0 chr4 40593750 40593779 -115036341 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1 894 5775 42 4 4 chr4 40593923 40594623 -115035497 - L1Md_F3 LINE L1 0 6584 5885 1 894 800 226 72 24 chr4 40594957 40595166 -115034954 + ID_B1 SINE B4 6 224 0 1 894 315 0 0 0 chr4 40595240 40595275 -115034845 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 894 294 197 0 116 chr4 40595826 40595895 -115034225 - ID4_ SINE ID -15 68 8 1 894 326 276 75 25 chr4 40595899 40596059 -115034061 - MLT1A LTR MaLR -202 172 5 1 894 261 0 0 0 chr4 40596849 40596878 -115033242 + (T)n Simple_repeat Simple_repeat 1 29 0 1 894 851 65 187 0 chr4 40596878 40597001 -115033119 - B1_Mus2 SINE Alu 0 147 2 1 894 245 250 19 0 chr4 40597123 40597175 -115032945 + tRNA-Ala-GCY_ tRNA tRNA 15 67 -8 1 894 231 157 0 41 chr4 40597375 40597448 -115032672 + C-rich Low_complexity Low_complexity 5 74 0 1 894 675 37 0 0 chr4 40597450 40597532 -115032588 + (TTC)n Simple_repeat Simple_repeat 2 83 0 1 894 1108 110 0 0 chr4 40597532 40597677 -115032443 - B1_Mus2 SINE Alu -2 145 1 1 894 463 199 94 8 chr4 40597680 40597807 -115032313 + MTD LTR MaLR 114 251 -168 1 894 550 317 78 30 chr4 40598186 40598482 -115031638 + MLT1F1 LTR MaLR 239 548 -21 1 894 1755 116 138 30 chr4 40598479 40598920 -115031200 - RLTR6_Mm LTR ERV1 -69 585 37 1 894 69042 13 12 1 chr4 40599029 40606722 -115023398 - RLTR6-int LTR ERV1 0 7778 1 1 894 1870 111 131 31 chr4 40606722 40607184 -115022936 - RLTR6_Mm LTR ERV1 -49 605 37 1 894 1990 157 40 19 chr4 40607365 40607735 -115022385 - ORR1C1 LTR MaLR 0 378 1 1 894 540 136 0 0 chr4 40607944 40608032 -115022088 + (TTC)n Simple_repeat Simple_repeat 3 90 0 1 894 926 83 0 8 chr4 40608050 40608184 -115021936 + (GAAAA)n Simple_repeat Simple_repeat 2 134 0 1 894 1066 188 14 14 chr4 40608186 40608397 -115021723 + MTD LTR MaLR 209 419 0 1 894 22 0 0 0 chr4 40608458 40608480 -115021640 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 307 190 0 0 chr4 40608480 40608538 -115021582 + ID_B1 SINE B4 166 223 -1 1 894 1146 43 0 0 chr4 40608548 40608686 -115021434 + B1_Mm SINE Alu 1 138 -9 1 894 342 0 0 0 chr4 40608688 40608726 -115021394 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 894 656 160 142 22 chr4 40608830 40608964 -115021156 + B1_Mur4 SINE Alu 1 150 0 1 894 612 267 94 84 chr4 40609577 40609863 -115020257 + B4A SINE B4 2 290 -2 1 894 531 229 27 48 chr4 40609885 40610032 -115020088 + RSINE1 SINE B4 21 164 -1 1 894 691 182 33 53 chr4 40610079 40610230 -115019890 - B1_Mur2 SINE Alu 0 149 2 1 894 382 107 50 0 chr4 40610573 40610654 -115019466 + ORR1B1 LTR MaLR 296 394 0 1 894 540 248 77 80 chr4 40610657 40610945 -115019175 - Lx8 LINE L1 -1598 6098 5813 1 894 468 225 301 28 chr4 40611037 40611308 -115018812 + ORR1D1 LTR MaLR 1 371 -8 1 894 2306 134 38 47 chr4 40611613 40612059 -115018061 + RMER10A LTR ERVL 1 442 0 1 894 610 206 9 0 chr4 40612098 40612205 -115017915 - B1_Mus1 SINE Alu -40 108 1 1 894 1842 191 5 44 chr4 40612976 40613365 -115016755 - ORR1D1 LTR MaLR 0 374 1 1 894 954 239 100 26 chr4 40613400 40613670 -115016450 + ORR1D2 LTR MaLR 81 370 0 2 894 1507 188 40 33 chr4 40614268 40614571 -115015549 - MTD LTR MaLR -7 412 108 2 894 313 265 154 19 chr4 40614762 40614866 -115015254 - MTD LTR MaLR -299 120 3 2 894 1052 161 17 0 chr4 40615632 40615812 -115014308 - URR1B DNA MER1_type -4 221 39 2 894 913 211 22 59 chr4 40615949 40616171 -115013949 + B3 SINE B2 2 215 -1 2 894 1209 332 5 3 chr4 40616977 40617358 -115012762 + Lx8 LINE L1 6471 6852 -621 2 894 403 307 29 90 chr4 40617593 40617872 -115012248 - L1M5 LINE L1 -1738 4408 4147 2 894 183 184 0 0 chr4 40618004 40618042 -115012078 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 894 364 277 121 28 chr4 40618044 40618185 -115011935 - RSINE1 SINE B4 -6 159 6 2 894 333 0 0 0 chr4 40618456 40618493 -115011627 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 894 1700 210 139 23 chr4 40619378 40619671 -115010449 - Lx7 LINE L1 0 7696 7357 2 894 572 0 0 14 chr4 40619671 40619740 -115010380 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 2 894 1700 210 139 23 chr4 40619740 40619929 -115010191 - Lx7 LINE L1 -340 7356 7159 2 894 288 157 78 0 chr4 40619929 40619980 -115010140 - ORR1C1 LTR MaLR 0 378 324 2 894 651 26 0 0 chr4 40620026 40620103 -115010017 + (CTTG)n Simple_repeat Simple_repeat 2 78 0 2 894 865 176 0 20 chr4 40620103 40620243 -115009877 - B1_Mur4 SINE Alu -11 139 3 2 894 1839 171 27 15 chr4 40620243 40620575 -115009545 - ORR1C1 LTR MaLR -42 336 1 2 894 2570 147 15 5 chr4 40620583 40620993 -115009127 - Lx7 LINE L1 -544 7152 6739 2 894 306 0 0 0 chr4 40620993 40621027 -115009093 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 894 2806 242 50 161 chr4 40621027 40621373 -115008747 - L1_Mur3 LINE L1 -1254 4629 4262 2 894 1079 135 10 42 chr4 40621373 40621414 -115008706 - B2_Mm2 SINE B2 -7 188 152 2 894 559 52 52 0 chr4 40621414 40621510 -115008610 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 894 1122 80 7 0 chr4 40621510 40621661 -115008459 - B2_Mm1a SINE B2 -41 152 2 2 894 5011 164 29 68 chr4 40621661 40622683 -115007437 - L1_Mur3 LINE L1 -1622 4261 3237 2 894 261 186 0 0 chr4 40622687 40622757 -115007363 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 894 773 215 45 35 chr4 40622757 40622955 -115007165 - Lx6 LINE L1 -575 6885 6686 2 894 372 341 82 16 chr4 40622993 40623175 -115006945 - MIRb SINE MIR -39 229 36 2 894 4199 191 58 29 chr4 40623300 40624231 -115005889 - RMER17B LTR ERVK 0 958 1 2 894 621 72 0 0 chr4 40624604 40624687 -115005433 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 2 894 198 0 0 0 chr4 40624775 40624797 -115005323 + (GGGGA)n Simple_repeat Simple_repeat 2 23 0 2 894 786 240 210 49 chr4 40624884 40625208 -115004912 - MTE2a LTR MaLR -1 378 3 2 894 351 0 0 0 chr4 40625248 40625287 -115004833 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 894 660 186 93 0 chr4 40625545 40625674 -115004446 + B1_Mur4 SINE Alu 3 143 -7 2 894 243 313 121 72 chr4 40626516 40626723 -115003397 - ORR1E LTR MaLR -38 321 105 2 894 817 290 34 13 chr4 40627053 40627293 -115002827 + ID_B1 SINE B4 20 266 -26 2 894 677 24 0 0 chr4 40627297 40627380 -115002740 + B1_Mm SINE Alu 65 147 0 2 894 330 134 0 0 chr4 40627380 40627447 -115002673 + (A)n Simple_repeat Simple_repeat 1 67 0 2 894 2346 218 62 12 chr4 40627747 40627987 -115002133 + Lx6 LINE L1 6872 7117 -579 2 894 297 0 0 0 chr4 40627987 40628020 -115002100 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 894 2346 216 63 13 chr4 40628020 40628326 -115001794 + Lx6 LINE L1 7112 7442 -18 2 894 420 227 72 0 chr4 40628447 40628544 -115001576 - RSINE1 SINE B4 -17 148 45 2 894 905 257 9 14 chr4 40628554 40628767 -115001353 + Lx9 LINE L1 6521 6732 -912 2 894 314 254 172 33 chr4 40628861 40628983 -115001137 + B1_Mm SINE Alu 4 142 -5 2 894 476 244 110 0 chr4 40629996 40630123 -114999997 + B1F2 SINE Alu 1 141 -8 2 894 359 238 75 30 chr4 40630249 40630383 -114999737 - L1MA6 LINE L1 -388 5912 5773 2 894 1814 149 33 10 chr4 40630441 40630746 -114999374 - MTB_Mm LTR MaLR -95 312 1 2 894 457 257 30 0 chr4 40630922 40631023 -114999097 + B1_Mur2 SINE Alu 12 115 -34 2 894 384 40 0 0 chr4 40631039 40631089 -114999031 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 894 641 210 34 0 chr4 40631144 40631263 -114998857 + RSINE1 SINE B4 18 140 -25 2 894 320 317 106 35 chr4 40631303 40631473 -114998647 - ORR1E LTR MaLR -176 183 2 2 894 465 305 32 32 chr4 40631586 40631742 -114998378 - ID_B1 SINE B4 -1 223 68 2 894 669 239 35 35 chr4 40631984 40632153 -114997967 - B3A SINE B2 0 198 30 2 895 1263 103 11 0 chr4 40634244 40634419 -114995701 + B2_Mm1t SINE B2 3 179 -14 2 895 24 0 0 0 chr4 40634438 40634462 -114995658 + AT_rich Low_complexity Low_complexity 1 24 0 2 895 237 231 19 0 chr4 40634538 40634590 -114995530 + CT-rich Low_complexity Low_complexity 4 56 0 2 895 25 31 0 0 chr4 40635095 40635127 -114994993 + AT_rich Low_complexity Low_complexity 1 32 0 2 895 497 184 0 0 chr4 40635406 40635493 -114994627 + MTC LTR MaLR 1 87 -334 2 895 23 33 0 0 chr4 40635520 40635550 -114994570 + AT_rich Low_complexity Low_complexity 1 30 0 2 895 790 182 0 7 chr4 40635562 40635699 -114994421 + B1_Mur4 SINE Alu 1 137 -13 2 895 225 0 0 0 chr4 40635699 40635724 -114994396 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 895 790 182 0 7 chr4 40635724 40635735 -114994385 + B1_Mur4 SINE Alu 138 147 -3 2 895 2267 141 17 0 chr4 40635747 40636095 -114994025 + MTC LTR MaLR 68 421 0 2 895 378 345 49 49 chr4 40636098 40636220 -114993900 + B4 SINE B4 40 161 -131 2 895 625 240 0 0 chr4 40636232 40636357 -114993763 + B1_Mur1 SINE Alu 16 140 -9 2 895 207 0 0 0 chr4 40636396 40636419 -114993701 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2 895 205 160 0 39 chr4 40636446 40636462 -114993658 + (TAAA)n Simple_repeat Simple_repeat 2 16 0 2 895 1680 21 5 0 chr4 40636462 40636652 -114993468 + B2_Mm1t SINE B2 1 191 -2 2 895 205 160 0 39 chr4 40636652 40636687 -114993433 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 895 538 229 18 0 chr4 40636886 40636995 -114993125 + PB1D10 SINE Alu 2 112 -5 2 895 711 112 0 0 chr4 40636995 40637102 -114993018 + (GGGAGA)n Simple_repeat Simple_repeat 3 109 0 2 895 903 180 143 0 chr4 40637106 40637295 -114992825 + B3 SINE B2 1 216 0 2 895 608 221 41 0 chr4 40638742 40638864 -114991256 - RSINE1 SINE B4 -36 129 3 2 895 1545 58 5 0 chr4 40638941 40639132 -114990988 + B2_Mm1a SINE B2 2 193 0 2 895 228 67 0 0 chr4 40639143 40639173 -114990947 + (A)n Simple_repeat Simple_repeat 1 30 0 2 895 1729 24 5 5 chr4 40639234 40639447 -114990673 + L1Md_F2 LINE L1 6370 6582 0 2 895 237 158 140 0 chr4 40639670 40639727 -114990393 + L1M1 LINE L1 5745 5809 -494 2 895 598 221 44 0 chr4 40639736 40639872 -114990248 + B1_Mur3 SINE Alu 2 143 -6 2 895 785 171 133 6 chr4 40639901 40640066 -114990054 + B3 SINE B2 25 210 -6 2 895 273 239 13 59 chr4 40640081 40640230 -114989890 + Lx7 LINE L1 5746 5911 -1785 2 895 456 265 51 0 chr4 40640891 40641008 -114989112 + RMER15 LTR ERVL 440 562 -13 2 895 323 270 101 34 chr4 40642638 40642757 -114987363 + ID_B1 SINE B4 88 214 -10 2 895 571 241 55 74 chr4 40642902 40643104 -114987016 + B3A SINE B2 1 198 0 2 895 721 189 0 8 chr4 40643145 40643273 -114986847 + B1_Mur2 SINE Alu 1 127 -22 2 895 837 99 0 0 chr4 40643275 40643396 -114986724 + (GA)n Simple_repeat Simple_repeat 2 122 0 2 895 361 255 66 0 chr4 40644468 40644574 -114985546 + MIRb SINE MIR 97 209 -59 2 895 621 238 146 6 chr4 40644898 40645063 -114985057 + B3 SINE B2 8 195 -21 2 895 342 253 10 68 chr4 40645141 40645239 -114984881 - ID4 SINE ID -59 93 2 2 895 301 244 47 47 chr4 40645398 40645484 -114984636 - B1_Mur1 SINE Alu -28 121 36 2 895 320 195 22 109 chr4 40645450 40645542 -114984578 + ID_B1 SINE B4 141 224 0 2 895 381 111 0 31 chr4 40645478 40645543 -114984577 + B1_Mur1 SINE Alu 87 149 0 2 895 768 170 44 0 chr4 40645632 40645767 -114984353 + B1_Mur2 SINE Alu 1 141 -8 2 895 216 0 0 0 chr4 40645767 40645791 -114984329 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 895 556 226 175 81 chr4 40645862 40646059 -114984061 + B3A SINE B2 9 197 -1 2 895 245 250 33 33 chr4 40646087 40646099 -114984021 - B3A SINE B2 -106 92 2 2 895 372 188 0 0 chr4 40646109 40646178 -114983942 - BC1_Mm scRNA scRNA -82 70 2 2 895 1181 155 14 28 chr4 40646382 40646595 -114983525 - URR1A DNA MER1_type 0 226 17 2 895 1658 197 250 14 chr4 40646829 40647203 -114982917 + RLTR20B1 LTR ERVK 2 468 -95 2 895 405 0 0 0 chr4 40647203 40647248 -114982872 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 895 437 214 131 31 chr4 40647248 40647329 -114982791 + RLTR20B1 LTR ERVK 469 553 -10 2 895 730 158 78 21 chr4 40648376 40648518 -114981602 - B1_Mur4 SINE Alu 0 150 1 2 895 552 108 151 0 chr4 40648606 40648699 -114981421 - B2_Mm2 SINE B2 -88 107 1 2 895 2275 110 0 3 chr4 40648724 40649044 -114981076 - ORR1A3 LTR MaLR 0 326 8 2 895 266 301 176 16 chr4 40649104 40649229 -114980891 + MER3 DNA MER1_type 2 146 -63 2 895 337 176 298 9 chr4 40649504 40649614 -114980506 + ID_B1 SINE B4 82 215 -9 2 895 437 265 68 10 chr4 40650533 40650636 -114979484 - PB1D7 SINE Alu -11 109 1 2 895 328 264 65 9 chr4 40651000 40651107 -114979013 - PB1D9 SINE Alu -7 113 1 2 895 483 291 84 0 chr4 40651603 40651849 -114978271 - L1MB1 LINE L1 -86 6085 5806 2 895 1276 79 20 45 chr4 40651863 40652061 -114978059 - B2_Mm2 SINE B2 -1 194 2 2 895 651 214 62 30 chr4 40652064 40652248 -114977872 - B3 SINE B2 0 216 1 2 895 186 43 0 0 chr4 40652299 40652322 -114977798 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 895 1202 55 0 0 chr4 40652322 40652459 -114977661 - B1_Mm SINE Alu -9 138 2 3 895 229 253 54 141 chr4 40652468 40652529 -114977591 - PB1D10 SINE Alu -6 111 52 3 895 213 39 0 0 chr4 40652536 40652562 -114977558 + (TTG)n Simple_repeat Simple_repeat 1 26 0 3 895 657 181 68 38 chr4 40652562 40652686 -114977434 - B1_Mur2 SINE Alu -15 134 5 3 895 229 253 54 141 chr4 40652686 40652716 -114977404 - PB1D10 SINE Alu -66 51 28 3 895 339 199 3 65 chr4 40652716 40652812 -114977308 - L1MB1 LINE L1 -562 5750 5666 2 895 270 0 0 0 chr4 40652830 40652860 -114977260 + (TAGA)n Simple_repeat Simple_repeat 2 31 0 3 895 189 0 0 0 chr4 40652860 40652880 -114977240 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 895 243 279 66 0 chr4 40652883 40652944 -114977176 - B4A SINE B4 -13 279 215 3 895 826 65 31 0 chr4 40652977 40653111 -114977009 - B1_Mur4 SINE Alu 0 150 2 3 895 997 240 55 9 chr4 40653112 40653331 -114976789 - B4A SINE B4 -62 230 2 3 895 799 241 122 29 chr4 40653331 40653643 -114976477 - L1MB1 LINE L1 -567 5616 5276 2 895 377 217 14 0 chr4 40653666 40653735 -114976385 + ID4 SINE ID 11 80 -3 3 895 1145 68 7 0 chr4 40653933 40654079 -114976041 + B1_Mus2 SINE Alu 1 147 0 3 895 226 193 70 0 chr4 40654079 40654136 -114975984 - L1MB1 LINE L1 -1413 4727 4667 2 895 333 0 0 0 chr4 40654587 40654624 -114975496 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 895 974 210 38 0 chr4 40654666 40654852 -114975268 - MTD LTR MaLR -20 399 207 3 895 245 258 221 29 chr4 40655077 40655249 -114974871 + LTR16C LTR ERVL 245 449 -40 3 895 492 233 29 0 chr4 40655404 40655507 -114974613 + PB1D10 SINE Alu 5 110 -7 3 895 836 153 7 0 chr4 40655527 40655664 -114974456 + B1_Mus2 SINE Alu 4 141 -6 3 895 259 299 65 0 chr4 40655781 40655858 -114974262 + ID4 SINE ID 1 82 -1 3 895 382 262 26 175 chr4 40656281 40656475 -114973645 - RSINE1 SINE B4 0 165 1 3 895 374 241 92 0 chr4 40656685 40656772 -114973348 + RSINE1 SINE B4 61 155 -10 3 895 283 322 22 22 chr4 40656801 40656890 -114973230 + B3 SINE B2 8 96 -120 3 895 1813 160 103 85 chr4 40656926 40657149 -114972971 + RMER4A LTR ERVK 1 214 -252 3 895 1169 61 0 13 chr4 40657149 40657298 -114972822 - B1_Mus2 SINE Alu 0 147 1 3 895 1813 160 103 85 chr4 40657298 40657436 -114972684 + RMER4A LTR ERVK 215 372 -94 3 895 378 0 0 0 chr4 40657436 40657478 -114972642 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 3 895 1813 160 103 85 chr4 40657478 40657573 -114972547 + RMER4A LTR ERVK 373 466 0 3 895 241 296 14 14 chr4 40657899 40657971 -114972149 - ID4 SINE ID -10 73 2 3 895 234 360 107 13 chr4 40658327 40658476 -114971644 + MLT1G1 LTR MaLR 409 571 -8 3 895 357 24 0 0 chr4 40658505 40658547 -114971573 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 895 253 300 0 0 chr4 40658653 40658713 -114971407 + B4A SINE B4 86 145 -147 3 895 461 298 9 0 chr4 40658664 40658778 -114971342 + B1F2 SINE Alu 12 126 -23 3 895 189 0 0 0 chr4 40658783 40658804 -114971316 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 895 215 288 113 1 chr4 40658804 40658895 -114971225 + L2b LINE L2 3227 3377 -49 3 895 715 254 48 38 chr4 40659041 40659250 -114970870 - B3 SINE B2 -5 211 1 3 895 490 284 129 0 chr4 40659498 40659653 -114970467 - MIR SINE MIR -62 200 26 3 895 203 0 0 36 chr4 40659733 40659761 -114970359 + (TATAA)n Simple_repeat Simple_repeat 3 29 0 3 895 222 91 0 0 chr4 40659783 40659816 -114970304 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 895 228 161 16 31 chr4 40659833 40659897 -114970223 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 895 808 182 7 34 chr4 40659912 40660060 -114970060 - B1_Mur3 SINE Alu 0 149 6 3 895 266 193 9 235 chr4 40659957 40660072 -114970048 - MT2B LTR ERVL -344 257 169 3 895 365 324 100 7 chr4 40660690 40660722 -114969398 + B4 SINE B4 46 90 -202 3 895 542 260 8 31 chr4 40660722 40660848 -114969272 + B1F2 SINE Alu 1 123 -26 3 895 983 258 71 104 chr4 40660848 40660893 -114969227 - MTD LTR MaLR 0 419 380 3 895 394 236 36 54 chr4 40660893 40661005 -114969115 + PB1D9 SINE Alu 5 114 -6 3 895 983 258 71 104 chr4 40661005 40661383 -114968737 - MTD LTR MaLR -40 379 10 3 895 1324 20 0 0 chr4 40661616 40661763 -114968357 + B1_Mm SINE Alu 1 147 0 3 895 201 94 0 0 chr4 40661764 40661796 -114968324 + (A)n Simple_repeat Simple_repeat 1 32 0 3 895 254 259 99 0 chr4 40661889 40661970 -114968150 + B3 SINE B2 122 210 -6 3 895 291 247 136 0 chr4 40662020 40662101 -114968019 - MTD LTR MaLR -326 93 2 3 895 577 344 112 40 chr4 40662137 40662331 -114967789 - B4 SINE B4 -21 271 58 3 895 452 193 7 156 chr4 40662331 40662472 -114967648 - PB1D9 SINE Alu 0 120 1 3 895 577 344 112 40 chr4 40662472 40662528 -114967592 - B4 SINE B4 -235 57 3 3 895 361 222 0 40 chr4 40662528 40662603 -114967517 - PB1D10 SINE Alu -3 114 43 3 895 758 107 0 16 chr4 40662636 40662760 -114967360 + (TCTCCC)n Simple_repeat Simple_repeat 5 126 0 3 895 279 54 0 0 chr4 40662760 40662797 -114967323 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 895 486 255 29 0 chr4 40662797 40662899 -114967221 - RSINE1 SINE B4 -57 108 4 3 895 501 184 19 46 chr4 40663134 40663242 -114966878 + Lx5 LINE L1 6259 6363 -687 3 895 865 255 61 127 chr4 40663244 40663621 -114966499 + Lx5 LINE L1 6484 6835 -215 3 895 192 77 0 0 chr4 40663731 40663757 -114966363 + (TTC)n Simple_repeat Simple_repeat 3 28 0 3 895 638 271 0 50 chr4 40664083 40664304 -114965816 + Lx6 LINE L1 7225 7434 -26 3 895 3226 34 0 10 chr4 40664577 40664964 -114965156 - L1Md_F2 LINE L1 0 6582 6200 3 895 225 224 0 109 chr4 40665042 40665097 -114965023 + BC1_Mm scRNA scRNA 4 52 -100 3 895 465 252 0 28 chr4 40665277 40665383 -114964737 - PB1 SINE Alu -23 104 2 3 895 590 158 0 56 chr4 40665668 40665775 -114964345 + ID_B1 SINE B4 124 224 0 3 895 641 51 0 0 chr4 40665961 40666039 -114964081 + B2_Mm2 SINE B2 2 79 -116 3 895 457 179 16 0 chr4 40666048 40666171 -114963949 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 895 250 287 30 60 chr4 40666186 40666201 -114963919 + B4 SINE B4 71 82 -210 3 895 548 192 0 39 chr4 40666201 40666304 -114963816 + PB1D7 SINE Alu 2 100 -20 3 895 331 188 0 30 chr4 40666321 40666387 -114963733 - B3 SINE B2 0 216 153 3 895 518 257 28 17 chr4 40666447 40666587 -114963533 - ID_B1 SINE B4 -79 213 76 3 895 378 232 49 0 chr4 40666481 40666563 -114963557 - PB1D7 SINE Alu -22 98 13 3 895 236 371 53 8 chr4 40666563 40666608 -114963512 + YREP_Mm Unknown Unknown 231 355 -1457 3 895 267 273 102 0 chr4 40666760 40666848 -114963272 + B1F1 SINE Alu 7 103 -46 3 895 228 312 25 12 chr4 40667265 40667346 -114962774 - ID4 SINE ID 0 83 2 3 895 666 175 26 71 chr4 40667500 40667654 -114962466 - B1_Mur2 SINE Alu 0 149 3 3 895 981 144 196 5 chr4 40667841 40668030 -114962090 + URR1B DNA MER1_type 1 225 0 3 895 269 250 44 0 chr4 40670619 40670687 -114959433 + B4A SINE B4 79 149 -143 3 895 339 204 0 25 chr4 40670629 40670711 -114959409 + B1_Mur4 SINE Alu 8 82 -66 3 895 567 206 0 78 chr4 40671805 40671958 -114958162 + B3A SINE B2 2 142 -56 3 895 265 254 0 0 chr4 40673515 40673570 -114956550 - RMER15 LTR ERVL -105 470 416 3 895 189 74 0 0 chr4 40673835 40673862 -114956258 + (T)n Simple_repeat Simple_repeat 1 27 0 3 895 197 54 81 0 chr4 40673983 40674020 -114956100 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 3 895 21 0 0 0 chr4 40674119 40674140 -114955980 + AT_rich Low_complexity Low_complexity 1 21 0 3 895 738 210 20 56 chr4 40674415 40674612 -114955508 - B3 SINE B2 -25 191 2 3 895 358 318 63 0 chr4 40675408 40675534 -114954586 - Lx8 LINE L1 -178 7295 7162 3 895 929 173 0 13 chr4 40675769 40675921 -114954199 + B1_Mur4 SINE Alu 1 150 0 3 895 306 0 0 0 chr4 40676237 40676271 -114953849 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 895 1019 60 8 0 chr4 40677587 40677720 -114952400 + B1_Mus2 SINE Alu 1 134 -13 3 895 447 227 36 9 chr4 40678064 40678175 -114951945 + PB1D9 SINE Alu 1 114 -6 3 895 204 67 0 0 chr4 40678288 40678318 -114951802 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 895 729 210 22 0 chr4 40679462 40679600 -114950520 + B1_Mus1 SINE Alu 2 142 -6 3 895 458 178 148 0 chr4 40681477 40681578 -114948542 - B3 SINE B2 -92 124 9 3 895 289 271 19 78 chr4 40681694 40681805 -114948315 + B1F SINE Alu 1 102 -15 3 895 363 232 61 31 chr4 40682883 40682981 -114947139 - PB1D10 SINE Alu -3 114 14 3 895 342 169 86 43 chr4 40683066 40683159 -114946961 - B1_Mur4 SINE Alu 0 150 54 3 895 327 211 99 0 chr4 40683119 40683190 -114946930 - ID_B1 SINE B4 -26 198 121 3 895 964 99 86 0 chr4 40683298 40683450 -114946670 + B2_Mm2 SINE B2 3 167 -28 3 895 293 294 47 0 chr4 40684558 40684643 -114945477 + MLT1J2 LTR MaLR 343 431 -17 3 895 476 183 66 19 chr4 40684666 40684772 -114945348 + PB1D9 SINE Alu 9 119 -1 3 895 418 146 95 20 chr4 40684783 40684930 -114945190 + RMER17C LTR ERVK 113 270 -140 3 895 267 31 0 0 chr4 40684947 40684979 -114945141 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3 895 346 189 10 118 chr4 40685566 40685668 -114944452 - ID_B1 SINE B4 -15 209 119 3 895 346 277 30 0 chr4 40686047 40686148 -114943972 + ID_B1 SINE B4 73 176 -48 3 895 353 247 34 0 chr4 40686065 40686154 -114943966 + PB1D10 SINE Alu 10 101 -16 3 895 357 229 31 10 chr4 40686277 40686374 -114943746 + PB1D10 SINE Alu 18 116 -1 3 895 269 179 121 152 chr4 40687056 40687071 -114943049 + MT2B2 LTR ERVL 155 198 -386 3 895 340 191 163 33 chr4 40687071 40687163 -114942957 + PB1D10 SINE Alu 14 117 0 3 895 241 264 129 19 chr4 40687165 40687254 -114942866 + B1F1 SINE Alu 3 94 -33 4 895 761 264 65 5 chr4 40687281 40687498 -114942622 + B4A SINE B4 1 230 -62 4 895 1689 21 5 0 chr4 40687702 40687893 -114942227 + B2_Mm1t SINE B2 1 192 -1 4 895 555 86 0 0 chr4 40687914 40687995 -114942125 + B1_Mus2 SINE Alu 3 83 -64 4 895 379 170 147 11 chr4 40688034 40688129 -114941991 + B1_Mur2 SINE Alu 42 149 0 4 895 311 302 21 10 chr4 40688153 40688250 -114941870 - B3A SINE B2 -16 182 85 4 895 667 232 127 0 chr4 40688248 40688429 -114941691 - B4A SINE B4 -76 216 13 4 895 348 224 13 13 chr4 40688484 40688561 -114941559 - B3 SINE B2 -139 77 1 4 895 379 319 52 0 chr4 40688724 40688859 -114941261 - B3A SINE B2 -54 144 3 4 895 270 0 0 0 chr4 40688868 40688898 -114941222 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 895 742 137 30 22 chr4 40688901 40689035 -114941085 - B1_Mur4 SINE Alu -13 137 3 4 895 216 250 139 0 chr4 40689039 40689111 -114941009 - B1F SINE Alu -2 147 66 4 895 1367 92 60 0 chr4 40689126 40689310 -114940810 - B2_Mm2 SINE B2 0 195 1 4 895 682 249 118 25 chr4 40689332 40689653 -114940467 + RLTR15 LTR ERVK 1 351 -8 4 895 192 40 0 0 chr4 40690587 40690612 -114939508 + (T)n Simple_repeat Simple_repeat 1 25 0 4 895 1253 41 0 0 chr4 40690612 40690759 -114939361 - B1_Mus2 SINE Alu 0 147 1 4 895 232 290 0 0 chr4 40690762 40690824 -114939296 - B4 SINE B4 -146 146 85 4 895 1245 41 0 0 chr4 40691343 40691489 -114938631 + B1_Mus1 SINE Alu 3 148 0 4 895 34 0 0 0 chr4 40691489 40691523 -114938597 + AT_rich Low_complexity Low_complexity 1 34 0 4 895 189 0 0 0 chr4 40691603 40691624 -114938496 + (CACCC)n Simple_repeat Simple_repeat 2 22 0 4 895 525 248 24 0 chr4 40691692 40691817 -114938303 + B3 SINE B2 83 210 -6 4 895 281 250 0 40 chr4 40691839 40691914 -114938206 + BC1_Mm scRNA scRNA 26 97 -55 4 895 653 194 79 0 chr4 40692279 40692418 -114937702 + B1_Mur4 SINE Alu 1 150 0 4 895 324 262 11 45 chr4 40693212 40693300 -114936820 + RSINE1 SINE B4 3 87 -78 4 895 1434 180 66 104 chr4 40693412 40693834 -114936286 - MTD LTR MaLR -13 406 1 4 895 919 249 78 43 chr4 40694041 40694066 -114936054 + B4 SINE B4 2 26 -266 4 895 1004 51 0 53 chr4 40694066 40694253 -114935867 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 895 465 19 0 0 chr4 40694253 40694306 -114935814 + (GGGGA)n Simple_repeat Simple_repeat 1 54 0 4 895 919 249 78 43 chr4 40694306 40694560 -114935560 + B4 SINE B4 27 291 -1 4 895 1222 38 164 0 chr4 40695049 40695208 -114934912 + B2_Mm1a SINE B2 2 186 -7 4 895 1505 36 0 25 chr4 40695254 40695452 -114934668 + L1Md_F2 LINE L1 6385 6577 -5 4 895 1538 47 0 49 chr4 40695722 40695925 -114934195 - B2_Mm1t SINE B2 0 193 1 4 895 216 0 0 0 chr4 40696090 40696114 -114934006 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 895 1123 50 14 0 chr4 40696114 40696255 -114933865 - B1_Mus2 SINE Alu -3 144 2 4 895 386 278 36 50 chr4 40696305 40696445 -114933675 - B1F SINE Alu -1 148 11 4 895 234 0 0 0 chr4 40696527 40696553 -114933567 + (T)n Simple_repeat Simple_repeat 1 26 0 4 895 1236 40 0 0 chr4 40696553 40696701 -114933419 - B1_Mus1 SINE Alu 0 148 1 4 895 1191 88 12 0 chr4 40696821 40696992 -114933128 + B2_Mm1t SINE B2 1 173 -20 4 895 273 154 39 0 chr4 40697039 40697091 -114933029 + B2_Mm2 SINE B2 47 100 -95 4 895 27 0 0 0 chr4 40697114 40697141 -114932979 + AT_rich Low_complexity Low_complexity 1 27 0 4 895 1040 222 0 27 chr4 40697209 40697431 -114932689 + B3 SINE B2 1 216 0 4 895 305 272 12 0 chr4 40697576 40697657 -114932463 - ID4 SINE ID 0 83 2 4 895 355 297 93 8 chr4 40697664 40697793 -114932327 - B1F SINE Alu -9 140 1 4 895 559 286 51 0 chr4 40698092 40698288 -114931832 - B4A SINE B4 -86 206 1 4 895 22 56 0 0 chr4 40698347 40698383 -114931737 + AT_rich Low_complexity Low_complexity 1 36 0 4 895 253 305 10 31 chr4 40699321 40699419 -114930701 - L1ME4a LINE L1 -63 6061 5966 4 895 1183 230 96 10 chr4 40699696 40700013 -114930107 + MTD LTR MaLR 3 375 -44 4 895 215 289 0 0 chr4 40700034 40700086 -114930034 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 895 453 269 97 51 chr4 40700671 40700847 -114929273 + B3A SINE B2 2 185 -13 4 895 330 26 0 0 chr4 40701419 40701458 -114928662 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 895 379 205 13 51 chr4 40701805 40701917 -114928203 - B1_Mur1 SINE Alu 0 149 10 4 895 21 36 0 0 chr4 40701925 40701953 -114928167 + AT_rich Low_complexity Low_complexity 1 28 0 4 895 558 165 0 0 chr4 40702222 40702325 -114927795 + CT-rich Low_complexity Low_complexity 2 104 0 4 895 220 200 138 0 chr4 40702325 40702390 -114927730 - B1_Mur1 SINE Alu -5 144 71 4 895 922 135 57 0 chr4 40703017 40703158 -114926962 + B1_Mur4 SINE Alu 2 150 0 4 895 580 126 109 67 chr4 40703211 40703330 -114926790 + B1_Mur4 SINE Alu 25 148 -2 4 895 189 107 0 0 chr4 40703331 40703359 -114926761 + (TAA)n Simple_repeat Simple_repeat 2 29 0 4 895 189 221 76 25 chr4 40703494 40703573 -114926547 + L2a LINE L2 3216 3298 -128 4 895 821 143 50 0 chr4 40703611 40703751 -114926369 + B1_Mus2 SINE Alu 1 147 0 4 895 1241 41 0 0 chr4 40703801 40703946 -114926174 + B1_Mm SINE Alu 3 147 0 4 895 414 0 0 0 chr4 40703954 40704000 -114926120 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 895 196 120 0 39 chr4 40704746 40704798 -114925322 + (CACGC)n Simple_repeat Simple_repeat 5 54 0 4 895 301 214 0 0 chr4 40705078 40705134 -114924986 - B1_Mus2 SINE Alu -89 58 3 4 895 340 194 15 15 chr4 40705266 40705334 -114924786 + ID4_ SINE ID 2 69 -14 4 895 321 172 0 0 chr4 40705533 40705597 -114924523 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 895 588 131 131 0 chr4 40705825 40705932 -114924188 - B1_Mur3 SINE Alu -7 142 22 4 895 211 250 0 22 chr4 40706007 40706052 -114924068 - B1_Mus2 SINE Alu -103 44 1 4 895 784 125 94 0 chr4 40706104 40706232 -114923888 + B1_Mur4 SINE Alu 1 140 -10 4 895 633 90 0 0 chr4 40706290 40706379 -114923741 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 895 296 127 0 18 chr4 40706373 40706429 -114923691 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 4 895 297 312 70 8 chr4 40706616 40706745 -114923375 + ID_B1 SINE B4 85 221 -3 4 895 298 257 29 0 chr4 40706755 40706825 -114923295 + ID4_ SINE ID 2 73 -10 4 895 586 220 153 17 chr4 40706931 40707107 -114923013 + RLTR30 LTR ERV1 3 202 -177 4 895 1045 93 7 0 chr4 40707237 40707377 -114922743 - B1_Mus2 SINE Alu -6 141 1 4 895 447 68 0 0 chr4 40707802 40707861 -114922259 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 4 895 659 191 14 41 chr4 40707877 40708024 -114922096 - B1_Mur4 SINE Alu -1 149 7 4 895 387 250 18 79 chr4 40708024 40708042 -114922078 - ID_B1 SINE B4 -2 222 68 4 895 7828 45 3 1 chr4 40708228 40709154 -114920966 + L1_Mus1 LINE L1 5640 6567 0 4 895 1247 41 7 0 chr4 40709345 40709492 -114920628 - B1_Mus1 SINE Alu 0 148 1 4 895 316 297 51 63 chr4 40709749 40710004 -114920116 - MuRRS4-int LTR ERV1 -1170 3893 3642 4 895 644 269 103 36 chr4 40710400 40710781 -114919339 + RLTR11B LTR ERVK 1 414 -27 4 895 211 173 19 19 chr4 40710948 40711001 -114919119 + T-rich Low_complexity Low_complexity 6 58 0 4 895 2305 234 39 84 chr4 40711597 40711697 -114918423 + RLTR22_Mur LTR ERVK 1 90 -1758 4 895 1122 62 7 33 chr4 40711697 40711848 -114918272 + B1_Mus1 SINE Alu 1 147 -1 4 895 2305 234 39 84 chr4 40711848 40711932 -114918188 + RLTR22_Mur LTR ERVK 91 172 -1676 4 895 1161 99 70 0 chr4 40711932 40712104 -114918016 + B2_Mm2 SINE B2 3 186 -9 4 895 2305 234 39 84 chr4 40712104 40712205 -114917915 + RLTR22_Mur LTR ERVK 173 267 -1581 4 895 1438 80 37 0 chr4 40712205 40712392 -114917728 - B2_Mm2 SINE B2 -1 194 1 4 895 2305 234 39 84 chr4 40712392 40712998 -114917122 + RLTR22_Mur LTR ERVK 268 853 -995 4 895 448 323 38 130 chr4 40713086 40713431 -114916689 + RMER12 LTR ERVK 1010 1322 0 4 895 2569 133 82 12 chr4 40713782 40714269 -114915851 - RLTR24 LTR ERV1 -2 527 7 4 895 310 236 0 0 chr4 40714386 40714464 -114915656 + B4 SINE B4 83 164 -128 4 895 385 154 38 4 chr4 40714394 40714480 -114915640 + B1_Mus2 SINE Alu 10 104 -16 4 895 335 109 119 45 chr4 40714532 40714599 -114915521 + RLTR30 LTR ERV1 1 72 -307 4 895 299 229 82 45 chr4 40714690 40714800 -114915320 - MTEa LTR MaLR -196 183 70 4 895 181 98 24 24 chr4 40714968 40715010 -114915110 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 4 895 1166 54 0 26 chr4 40715017 40715168 -114914952 - B1_Mus1 SINE Alu 0 148 2 4 895 414 0 0 0 chr4 40715192 40715238 -114914882 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 895 771 181 114 23 chr4 40715240 40715415 -114914705 - B3 SINE B2 -25 191 1 4 895 702 151 362 0 chr4 40715438 40715590 -114914530 - B3 SINE B2 -7 209 3 4 895 357 241 35 142 chr4 40715678 40715697 -114914423 + B4 SINE B4 77 225 -65 4 895 695 204 0 40 chr4 40715697 40715845 -114914275 + B1_Mus1 SINE Alu 6 147 -1 4 895 638 191 65 33 chr4 40715936 40716117 -114914003 + B3 SINE B2 6 211 -5 4 895 1219 106 32 0 chr4 40716158 40716316 -114913804 + B2_Mm2 SINE B2 1 158 -37 4 895 243 0 0 0 chr4 40716316 40716343 -114913777 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 4 895 1219 106 32 0 chr4 40716343 40716373 -114913747 + B2_Mm2 SINE B2 159 194 -1 4 895 292 190 0 0 chr4 40716508 40716566 -114913554 + B3A SINE B2 14 71 -127 5 895 3251 231 72 54 chr4 40716567 40717057 -114913063 + RMER12B LTR ERVK 1 506 -898 5 895 1449 55 33 0 chr4 40717057 40717239 -114912881 + B2_Mm1t SINE B2 2 189 -4 5 895 3251 231 72 54 chr4 40717239 40717765 -114912355 + RMER12B LTR ERVK 507 1036 -368 5 895 1268 27 0 0 chr4 40717765 40717913 -114912207 - B1_Mus1 SINE Alu 0 148 1 5 895 3251 231 72 54 chr4 40717913 40718069 -114912051 + RMER12B LTR ERVK 1037 1196 -208 5 895 450 0 0 0 chr4 40718071 40718121 -114911999 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 895 269 231 21 42 chr4 40718154 40718249 -114911871 + RLTR21 LTR ERVK 1438 1530 -42 5 895 4251 161 90 14 chr4 40718371 40719168 -114910952 + RMER13A LTR ERVK 3 860 0 5 895 393 171 0 54 chr4 40719170 40719244 -114910876 - tRNA-Lys-AAG tRNA tRNA 0 76 7 5 895 786 158 0 0 chr4 40719399 40719532 -114910588 - B1_Mur3 SINE Alu -5 144 12 5 895 228 289 0 0 chr4 40719732 40719777 -114910343 + tRNA-Ala-GCY_ tRNA tRNA 27 71 -4 5 895 297 0 0 0 chr4 40719943 40719976 -114910144 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 5 895 180 111 0 0 chr4 40720117 40720144 -114909976 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 5 895 342 0 0 0 chr4 40720173 40720211 -114909909 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 895 456 19 0 0 chr4 40720835 40720888 -114909232 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 895 315 0 0 0 chr4 40720888 40720922 -114909198 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 895 232 296 53 44 chr4 40720987 40721100 -114909020 - MLT1L LTR MaLR -420 190 77 5 895 285 225 0 27 chr4 40721395 40721468 -114908652 - ID2 SINE ID -11 72 2 5 895 375 162 303 0 chr4 40721985 40722084 -114908036 + B1_Mur2 SINE Alu 17 145 -4 5 895 366 23 0 0 chr4 40722122 40722165 -114907955 + (T)n Simple_repeat Simple_repeat 1 43 0 5 895 371 310 50 19 chr4 40723006 40723031 -114907089 + B4A SINE B4 59 88 -204 5 895 644 192 12 10 chr4 40723031 40723169 -114906951 + B1_Mur4 SINE Alu 1 148 0 5 895 227 202 43 106 chr4 40723181 40723275 -114906845 + MIR SINE MIR 175 262 0 5 895 661 227 36 24 chr4 40723279 40723446 -114906674 + B3 SINE B2 4 163 -32 5 895 2013 157 37 17 chr4 40723445 40723795 -114906325 - ORR1B2 LTR MaLR -10 357 1 5 895 1239 35 7 0 chr4 40723896 40724041 -114906079 - B1_Mus1 SINE Alu -1 147 2 5 895 910 198 27 31 chr4 40724886 40725178 -114904942 - RMER17C LTR ERVK -119 291 1 5 895 662 265 37 14 chr4 40725403 40725621 -114904499 - ID_B1 SINE B4 0 224 2 5 895 386 130 330 61 chr4 40725663 40725778 -114904342 - B2_Mm1t SINE B2 0 193 48 5 895 571 98 12 0 chr4 40725810 40725892 -114904228 - B2_Mm1t SINE B2 -14 179 97 5 895 233 189 19 19 chr4 40725878 40725932 -114904188 - B2_Mm2 SINE B2 -141 54 1 5 895 419 299 34 0 chr4 40726002 40726119 -114904001 + RSINE1 SINE B4 5 125 -40 5 895 363 44 0 0 chr4 40726126 40726171 -114903949 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 895 873 126 14 7 chr4 40726205 40726349 -114903771 + B1_Mur4 SINE Alu 6 150 0 5 895 387 248 37 75 chr4 40726206 40726367 -114903753 + B4A SINE B4 91 245 -47 5 895 254 194 16 0 chr4 40726385 40726447 -114903673 + GA-rich Low_complexity Low_complexity 2 64 0 5 895 1224 61 0 0 chr4 40726486 40726633 -114903487 - B1_Mus2 SINE Alu 0 147 1 5 895 189 0 0 0 chr4 40726951 40726972 -114903148 + (A)n Simple_repeat Simple_repeat 1 21 0 5 895 295 308 115 0 chr4 40726986 40727090 -114903030 + PB1D7 SINE Alu 5 120 0 5 895 871 180 143 0 chr4 40727094 40727283 -114902837 + B3 SINE B2 1 216 0 5 895 808 182 0 39 chr4 40727313 40727467 -114902653 - B1_Mur2 SINE Alu 0 149 2 5 895 1529 43 21 0 chr4 40727476 40727662 -114902458 - B2_Mm1a SINE B2 -3 190 1 5 895 384 103 0 0 chr4 40727674 40727732 -114902388 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 5 895 901 226 43 14 chr4 40729498 40729705 -114900415 + B3 SINE B2 3 215 -1 5 895 1539 42 11 0 chr4 40729921 40730110 -114900010 - B2_Mm1t SINE B2 -1 192 2 5 895 326 97 0 31 chr4 40730320 40730382 -114899738 - ORR1C2 LTR MaLR -4 380 294 5 895 3089 95 18 2 chr4 40730502 40730936 -114899184 - BGLII_B LTR ERVK 0 441 1 5 895 667 182 98 0 chr4 40731145 40731277 -114898843 - B1_Mus2 SINE Alu -1 146 2 5 895 512 256 1 11 chr4 40731327 40731452 -114898668 + B3 SINE B2 2 124 -69 5 895 1217 62 0 0 chr4 40731468 40731613 -114898507 - B1_Mus2 SINE Alu -1 146 2 5 895 226 336 9 9 chr4 40731774 40731885 -114898235 - PB1D9 SINE Alu -9 111 1 5 895 450 303 93 127 chr4 40731994 40732166 -114897954 + L1MEg LINE L1 609 764 -5320 5 895 1198 68 0 0 chr4 40732166 40732314 -114897806 + B1_Mus1 SINE Alu 1 148 0 5 895 450 303 93 127 chr4 40732314 40732754 -114897366 + L1MEg LINE L1 765 1200 -4884 5 895 1218 61 0 0 chr4 40733455 40733602 -114896518 + B1_Mus1 SINE Alu 2 148 0 5 895 189 0 0 0 chr4 40733602 40733623 -114896497 + (A)n Simple_repeat Simple_repeat 1 21 0 5 895 409 265 14 42 chr4 40734180 40734322 -114895798 + ID_B1 SINE B4 79 216 -8 5 895 205 205 0 0 chr4 40734417 40734456 -114895664 + A-rich Low_complexity Low_complexity 3 41 0 5 895 458 263 87 7 chr4 40734702 40734840 -114895280 - B1_Mur1 SINE Alu 0 149 1 5 895 263 275 14 55 chr4 40735156 40735171 -114894949 + B4 SINE B4 75 86 -206 5 895 416 217 94 0 chr4 40735171 40735272 -114894848 + B1_Mm SINE Alu 1 113 -7 5 895 180 77 0 0 chr4 40735311 40735337 -114894783 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 895 567 188 30 38 chr4 40735339 40735472 -114894648 - B1F1 SINE Alu -1 148 17 5 895 3139 93 99 75 chr4 40735711 40735794 -114894326 - RLTR33 LTR ERVK 0 678 600 5 895 1186 63 0 0 chr4 40735794 40735936 -114894184 + B1_Mus1 SINE Alu 2 143 -5 5 895 3139 93 99 75 chr4 40735936 40736397 -114893723 - RLTR33 LTR ERVK -79 599 121 5 895 1219 68 0 0 chr4 40736700 40736847 -114893273 + B1_Mm SINE Alu 1 147 0 5 895 186 103 0 0 chr4 40736847 40736876 -114893244 + (A)n Simple_repeat Simple_repeat 1 29 0 5 895 1507 58 5 10 chr4 40736879 40737072 -114893048 - B2_Mm1t SINE B2 -1 192 1 5 895 397 195 162 23 chr4 40737199 40737343 -114892777 + L1_Mur3 LINE L1 5379 5556 -684 5 895 1919 102 14 37 chr4 40737370 40737666 -114892454 - RLTR14 LTR ERV1 -93 289 1 5 895 671 296 67 39 chr4 40737806 40738136 -114891984 + L1MA4A LINE L1 5592 5930 -373 5 895 30 27 0 0 chr4 40738219 40738256 -114891864 + AT_rich Low_complexity Low_complexity 1 37 0 5 895 242 250 91 13 chr4 40738278 40738291 -114891829 + B4 SINE B4 70 149 -140 5 895 305 183 16 16 chr4 40738291 40738352 -114891768 + B1F2 SINE Alu 2 62 -87 5 895 436 258 15 38 chr4 40738423 40738434 -114891686 + L1M5 LINE L1 4804 4814 -1332 5 895 3286 163 104 46 chr4 40738434 40738702 -114891418 - RMER6A LTR ERVK -1 755 482 5 895 1323 110 16 16 chr4 40738702 40738896 -114891224 - B2_Mm2 SINE B2 -1 194 1 5 895 3286 163 104 46 chr4 40738896 40738962 -114891158 - RMER6A LTR ERVK -275 481 418 5 895 315 0 0 0 chr4 40738962 40738997 -114891123 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 895 1040 59 0 56 chr4 40738997 40739141 -114890979 - B1_Mus1 SINE Alu -11 137 2 5 895 3286 163 104 46 chr4 40739141 40739518 -114890602 - RMER6A LTR ERVK -339 417 2 5 895 436 261 16 39 chr4 40739518 40739655 -114890465 + L1M5 LINE L1 4815 4948 -1198 5 895 254 359 80 25 chr4 40740007 40740068 -114890052 - B4 SINE B4 -12 280 116 5 895 485 208 169 32 chr4 40740068 40740192 -114889928 - B1_Mus2 SINE Alu -6 141 1 5 895 530 314 90 0 chr4 40740192 40740347 -114889773 - B3 SINE B2 -16 200 32 5 895 254 359 80 25 chr4 40740192 40740207 -114889913 - B4 SINE B4 -12 115 70 5 895 811 97 4 24 chr4 40740354 40740491 -114889629 - B1_Mus1 SINE Alu 0 149 11 5 895 1084 199 14 45 chr4 40740615 40740705 -114889415 - B3 SINE B2 -2 214 132 5 895 3313 104 13 67 chr4 40740705 40741229 -114888891 - RLTR19A LTR ERVK 0 496 1 5 895 1084 199 14 45 chr4 40741229 40741359 -114888761 - B3 SINE B2 -85 131 1 5 895 2142 155 39 10 chr4 40742184 40742342 -114887778 - RMER10B LTR ERVL -3 395 239 5 895 1146 84 6 22 chr4 40742342 40742525 -114887595 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 895 2142 155 39 10 chr4 40742525 40742750 -114887370 - RMER10B LTR ERVL -160 238 1 5 895 1874 125 8 116 chr4 40743182 40743544 -114886576 + ORR1A4 LTR MaLR 5 327 -2 5 895 1655 26 16 0 chr4 40743555 40743747 -114886373 + B2_Mm2 SINE B2 1 195 0 5 895 2656 130 118 9 chr4 40743770 40744234 -114885886 + ORR1A4-int LTR MaLR 9 523 -1440 5 895 1708 150 62 84 chr4 40744226 40744597 -114885523 + ORR1A4-int LTR MaLR 1147 1509 0 5 895 2318 79 3 79 chr4 40744597 40744953 -114885167 + ORR1A4 LTR MaLR 1 329 0 5 895 411 261 8 34 chr4 40745240 40745359 -114884761 + RCHARR1 DNA MER1_type 857 972 -2 5 895 315 362 7 21 chr4 40745400 40745496 -114884624 + MLT1F LTR MaLR 30 122 -426 5 895 204 40 0 0 chr4 40745496 40745521 -114884599 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 895 315 362 7 21 chr4 40745521 40745568 -114884552 + MLT1F LTR MaLR 123 170 -378 5 895 396 59 0 0 chr4 40745568 40745619 -114884501 + (GAA)n Simple_repeat Simple_repeat 2 52 0 5 895 215 236 194 0 chr4 40745660 40745732 -114884388 + MIR3 SINE MIR 72 157 -51 5 895 273 135 0 0 chr4 40746781 40746833 -114883287 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 895 498 17 0 0 chr4 40746834 40746893 -114883227 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 895 3262 48 13 2 chr4 40748471 40748867 -114881253 + MTB LTR MaLR 1 400 0 5 895 338 197 12 62 chr4 40749274 40749355 -114880765 - B1F SINE Alu -64 85 9 5 895 250 241 69 0 chr4 40749672 40749730 -114880390 - ID4 SINE ID -19 64 3 5 895 355 264 30 23 chr4 40749743 40749863 -114880257 - B1F SINE Alu -3 117 3 5 895 699 309 84 8 chr4 40749870 40750121 -114879999 + MER21B LTR ERV1 466 735 -128 5 895 842 176 87 11 chr4 40750589 40750773 -114879347 + B3A SINE B2 1 198 0 5 895 199 295 127 45 chr4 40751441 40751551 -114878569 - MIR SINE MIR -34 228 110 6 895 207 0 0 0 chr4 40752277 40752300 -114877820 + (A)n Simple_repeat Simple_repeat 1 23 0 6 895 234 204 0 20 chr4 40752910 40752960 -114877160 + GA-rich Low_complexity Low_complexity 3 51 0 6 895 212 0 36 0 chr4 40753516 40753544 -114876576 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 895 583 193 265 0 chr4 40754555 40754721 -114875399 + B3 SINE B2 1 210 -6 6 895 821 171 14 14 chr4 40755753 40755901 -114874219 - B1_Mur2 SINE Alu 0 149 2 6 895 785 250 20 20 chr4 40755926 40756122 -114873998 - B3A SINE B2 -2 196 1 6 895 766 121 113 0 chr4 40756909 40757033 -114873087 - B1_Mur1 SINE Alu 0 149 12 6 895 498 252 90 83 chr4 40756912 40757068 -114873052 - B4 SINE B4 -69 223 67 6 895 411 268 10 67 chr4 40757887 40757991 -114872129 - PB1D10 SINE Alu -17 100 3 6 895 231 274 0 16 chr4 40758062 40758125 -114871995 - PB1D10 SINE Alu -34 83 22 6 895 182 62 31 0 chr4 40758247 40758279 -114871841 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 895 358 229 0 0 chr4 40758307 40758377 -114871743 - ID4 SINE ID -13 70 1 6 895 754 211 28 0 chr4 40759070 40759212 -114870908 - B1_Mur2 SINE Alu -1 148 3 6 895 312 359 43 37 chr4 40760058 40760246 -114869874 + L1M5 LINE L1 5613 5801 -372 6 895 285 75 0 0 chr4 40760253 40760293 -114869827 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 6 895 286 287 217 0 chr4 40760296 40760411 -114869709 + B1F SINE Alu 2 141 -8 6 895 216 0 0 0 chr4 40760411 40760435 -114869685 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 895 240 35 0 0 chr4 40760441 40760470 -114869650 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 895 228 385 91 15 chr4 40760624 40760756 -114869364 - L2b LINE L2 -32 3343 3202 6 895 209 33 0 32 chr4 40760960 40760991 -114869129 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 6 895 219 88 0 0 chr4 40761989 40762023 -114868097 + (GGGTG)n Simple_repeat Simple_repeat 4 37 0 6 895 199 229 129 0 chr4 40762681 40762751 -114867369 + MIR SINE MIR 58 136 -126 6 895 248 239 233 22 chr4 40763226 40763316 -114866804 - PB1D9 SINE Alu -10 110 2 6 896 346 396 93 19 chr4 40764648 40764972 -114865148 + L1ME4a LINE L1 5564 5911 -213 6 896 728 246 42 44 chr4 40765953 40766128 -114863992 + B3A SINE B2 1 170 -28 6 896 396 0 0 0 chr4 40766128 40766172 -114863948 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 896 377 263 58 131 chr4 40766172 40766202 -114863918 + B2_Mm2 SINE B2 167 191 -4 6 896 310 203 64 0 chr4 40766560 40766629 -114863491 - B1F SINE Alu -31 118 46 6 896 341 273 0 0 chr4 40768586 40768677 -114861443 - ID4 SINE ID -61 91 1 6 896 832 114 37 22 chr4 40769037 40769172 -114860948 - B1_Mur3 SINE Alu 0 149 13 6 896 851 152 7 14 chr4 40769623 40769770 -114860350 + B1_Mur4 SINE Alu 1 146 -4 6 896 207 0 0 0 chr4 40770077 40770100 -114860020 + (TTA)n Simple_repeat Simple_repeat 3 25 0 6 896 228 67 0 0 chr4 40770100 40770130 -114859990 + (TAG)n Simple_repeat Simple_repeat 1 30 0 6 896 182 244 0 24 chr4 40770946 40770988 -114859132 + MIR SINE MIR 57 97 -165 6 896 225 94 0 0 chr4 40771850 40771882 -114858238 + (GGA)n Simple_repeat Simple_repeat 3 34 0 6 896 776 286 81 53 chr4 40772622 40772906 -114857214 - B4A SINE B4 0 292 1 6 896 198 0 0 0 chr4 40774133 40774155 -114855965 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 896 251 28 28 0 chr4 40774209 40774245 -114855875 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 896 2609 141 230 15 chr4 40774896 40775622 -114854498 + RMER19B LTR ERVK 1 882 -20 6 896 1120 51 7 0 chr4 40775627 40775764 -114854356 + B1_Mm SINE Alu 1 138 -9 6 896 281 47 23 0 chr4 40775764 40775807 -114854313 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 896 1348 90 0 0 chr4 40776244 40776421 -114853699 + B2_Mm2 SINE B2 1 177 -18 6 896 215 171 24 0 chr4 40776444 40776485 -114853635 + B4 SINE B4 41 82 -210 6 896 452 73 28 2 chr4 40776449 40776558 -114853562 + B2_Mm2 SINE B2 47 194 -1 6 896 1155 61 7 13 chr4 40776616 40776766 -114853354 + B1_Mur3 SINE Alu 1 149 0 6 896 25 31 0 0 chr4 40777440 40777472 -114852648 + AT_rich Low_complexity Low_complexity 1 32 0 6 896 240 59 0 0 chr4 40777702 40777736 -114852384 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 896 258 359 68 0 chr4 40777833 40777936 -114852184 + PB1D10 SINE Alu 1 110 -7 6 896 208 98 0 47 chr4 40777943 40777986 -114852134 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 6 896 206 311 75 75 chr4 40778218 40778486 -114851634 - L2c LINE L2 -4 3383 3116 6 896 185 83 0 27 chr4 40778566 40778603 -114851517 + (CCAA)n Simple_repeat Simple_repeat 3 38 0 6 896 215 31 0 30 chr4 40778618 40778651 -114851469 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 6 896 351 0 0 0 chr4 40778869 40778908 -114851212 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 896 1216 69 0 6 chr4 40778910 40779070 -114851050 - B2_Mm2 SINE B2 -35 160 2 6 896 437 301 38 25 chr4 40779105 40779265 -114850855 + RSINE1 SINE B4 1 162 -3 6 896 25 0 0 0 chr4 40779425 40779450 -114850670 + AT_rich Low_complexity Low_complexity 1 25 0 6 896 508 209 57 0 chr4 40779504 40779609 -114850511 - PB1D9 SINE Alu -8 112 2 6 896 1219 48 0 13 chr4 40779628 40779777 -114850343 - B1_Mus1 SINE Alu 0 148 2 6 896 1456 60 38 0 chr4 40779865 40780049 -114850071 + B2_Mm2 SINE B2 1 191 -4 6 896 180 0 0 0 chr4 40780290 40780310 -114849810 + (A)n Simple_repeat Simple_repeat 1 20 0 6 896 444 270 42 35 chr4 40780332 40780474 -114849646 - ID_B1 SINE B4 0 224 82 6 896 28 61 0 0 chr4 40780672 40780721 -114849399 + AT_rich Low_complexity Low_complexity 1 49 0 6 896 966 216 34 24 chr4 40781125 40781334 -114848786 - B3 SINE B2 -5 211 1 6 896 442 292 26 0 chr4 40782565 40782678 -114847442 + B4A SINE B4 4 119 -173 6 896 489 294 70 43 chr4 40782846 40783102 -114847018 + L1MC4 LINE L1 6744 7006 -1036 6 896 535 131 103 32 chr4 40783141 40783267 -114846853 + Lx9 LINE L1 7470 7604 -40 6 896 43 47 0 0 chr4 40783283 40783347 -114846773 + AT_rich Low_complexity Low_complexity 1 64 0 6 896 306 270 95 35 chr4 40783608 40783777 -114846343 + L1MC4 LINE L1 7456 7634 -408 6 896 215 255 0 21 chr4 40783872 40783920 -114846200 + B1F1 SINE Alu 95 141 -8 6 896 327 78 0 0 chr4 40783936 40783987 -114846133 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 896 408 20 0 0 chr4 40783989 40784038 -114846082 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 896 827 118 7 65 chr4 40784214 40784368 -114845752 - B1_Mur3 SINE Alu 0 149 5 6 896 923 283 61 26 chr4 40785116 40785598 -114844522 + L1M4 LINE L1 3508 3985 -2161 6 896 1253 41 0 0 chr4 40785634 40785781 -114844339 - B1_Mus2 SINE Alu 0 147 1 6 896 326 100 17 0 chr4 40785811 40785871 -114844249 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 896 659 203 97 14 chr4 40785872 40785886 -114844234 - RSINE1 SINE B4 -7 158 146 6 896 432 0 0 0 chr4 40785886 40785934 -114844186 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 896 659 203 97 14 chr4 40785934 40786064 -114844056 - RSINE1 SINE B4 -20 145 2 6 896 397 187 176 0 chr4 40786094 40786185 -114843935 - PB1D9 SINE Alu -2 118 12 6 896 263 292 0 14 chr4 40786125 40786198 -114843922 - B4A SINE B4 -136 156 85 6 896 297 293 67 25 chr4 40786211 40786330 -114843790 + L1MD LINE L1 4037 4160 -1986 6 896 1168 173 5 14 chr4 40787136 40787347 -114842773 - B3 SINE B2 -6 210 2 6 896 314 296 113 32 chr4 40788551 40788736 -114841384 + HAL1-3A_ME LINE L1 2235 2434 -424 6 896 310 167 49 16 chr4 40789014 40789075 -114841045 + B1F SINE Alu 42 104 -45 6 896 269 263 65 13 chr4 40789075 40789091 -114841029 + ID_B1 SINE B4 123 203 -21 6 896 482 118 56 45 chr4 40789154 40789243 -114840877 + B1_Mm SINE Alu 49 138 -9 6 896 180 0 0 0 chr4 40789243 40789263 -114840857 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 896 572 270 102 40 chr4 40789366 40789640 -114840480 + B4A SINE B4 2 292 0 6 896 855 151 0 11 chr4 40789642 40790238 -114839882 + (CA)n Simple_repeat Simple_repeat 1 589 0 6 896 329 239 0 15 chr4 40790269 40790337 -114839783 + ID4_ SINE ID 2 68 -15 6 896 280 220 92 83 chr4 40790467 40790576 -114839544 + Tigger7 DNA MER2_type 2272 2381 -110 6 896 424 279 71 6 chr4 40790650 40790829 -114839291 - MIR SINE MIR -15 253 69 6 896 417 285 175 6 chr4 40790842 40791008 -114839112 - B3A SINE B2 -4 194 1 6 896 336 48 0 0 chr4 40793125 40793167 -114836953 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 896 1512 168 207 34 chr4 40793517 40793874 -114836246 - MTD LTR MaLR 0 419 1 6 896 239 203 134 45 chr4 40794065 40794132 -114835988 - BC1_Mm scRNA scRNA -73 79 7 6 896 386 279 124 94 chr4 40794799 40795064 -114835056 + B4 SINE B4 2 274 -18 6 896 351 0 0 0 chr4 40795694 40795733 -114834387 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 896 401 216 0 13 chr4 40796955 40797030 -114833090 + RSINE1 SINE B4 3 76 -89 6 896 207 0 0 0 chr4 40797440 40797463 -114832657 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 896 387 0 0 0 chr4 40798410 40798453 -114831667 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 896 241 286 0 0 chr4 40798891 40798947 -114831173 - ID SINE ID -167 57 2 6 896 226 257 133 18 chr4 40799132 40799244 -114830876 - MIRc SINE MIR -15 247 127 7 896 295 232 83 74 chr4 40799881 40800002 -114830118 - MIRb SINE MIR -51 217 96 7 896 316 344 7 51 chr4 40801915 40801962 -114828158 + ID_B1 SINE B4 44 175 -49 7 896 362 286 11 0 chr4 40801962 40802053 -114828067 + PB1D10 SINE Alu 3 94 -23 7 896 256 269 75 25 chr4 40802418 40802498 -114827622 + RLTR25B LTR ERVK 426 509 -519 7 896 737 47 65 19 chr4 40802434 40802542 -114827578 + B1_Mus1 SINE Alu 36 148 0 7 896 240 111 0 0 chr4 40802555 40802591 -114827529 + (A)n Simple_repeat Simple_repeat 1 36 0 7 896 207 277 0 15 chr4 40802711 40802777 -114827343 + L2 LINE L2 2316 2380 -1039 7 896 357 24 0 0 chr4 40802965 40803007 -114827113 + (GTTTG)n Simple_repeat Simple_repeat 1 42 0 7 896 344 256 42 9 chr4 40803012 40803113 -114827007 - PB1D7 SINE Alu -17 103 3 7 896 810 81 0 0 chr4 40803146 40803257 -114826863 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 7 896 291 264 128 54 chr4 40803262 40803286 -114826834 - B4A SINE B4 -46 246 88 7 896 428 263 32 81 chr4 40803286 40803410 -114826710 - PB1D7 SINE Alu 0 120 3 7 896 21 0 0 0 chr4 40803714 40803735 -114826385 + GC_rich Low_complexity Low_complexity 1 21 0 7 896 369 0 0 0 chr4 40804268 40804309 -114825811 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 896 487 291 74 7 chr4 40804313 40804448 -114825672 - RSINE1 SINE B4 -20 145 2 7 896 386 244 16 102 chr4 40804495 40804623 -114825497 + PB1D10 SINE Alu 1 117 0 7 896 278 274 89 75 chr4 40804623 40804769 -114825351 - YREP_Mm Unknown Unknown -1484 328 181 7 896 559 248 96 22 chr4 40804638 40804774 -114825346 + ID_B1 SINE B4 79 224 0 7 896 294 95 0 0 chr4 40804800 40804842 -114825278 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 7 896 436 319 26 0 chr4 40805640 40805756 -114824364 + ID_B1 SINE B4 105 223 -1 7 896 271 239 161 42 chr4 40805779 40805846 -114824274 + ID SINE ID 8 83 -141 7 896 2851 27 45 0 chr4 40805846 40806177 -114823943 + ORR1A0 LTR MaLR 1 346 0 7 896 271 239 161 42 chr4 40806177 40806206 -114823914 + ID_B1 SINE B4 84 113 -111 7 896 986 146 0 0 chr4 40806206 40806350 -114823770 + B1_Mur4 SINE Alu 2 145 -5 7 896 271 239 161 42 chr4 40806350 40806370 -114823750 + ID_B1 SINE B4 114 138 -86 7 896 302 354 102 20 chr4 40806438 40806692 -114823428 + L1MC4 LINE L1 6801 7075 -967 7 896 340 272 209 38 chr4 40806793 40807003 -114823117 + L1MC4 LINE L1 7548 7793 -249 7 896 419 308 83 58 chr4 40807065 40807306 -114822814 + Lx8 LINE L1 7220 7466 -7 7 896 305 53 0 0 chr4 40807331 40807369 -114822751 + U2 snRNA snRNA 1 38 -150 7 896 664 294 211 75 chr4 40807457 40807828 -114822292 - MLT1C-int LTR MaLR -222 1187 764 7 896 387 73 0 0 chr4 40807828 40807883 -114822237 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 896 664 294 211 75 chr4 40807883 40808033 -114822087 - MLT1C-int LTR MaLR -646 763 595 7 896 509 248 85 8 chr4 40808054 40808184 -114821936 - ID_B1 SINE B4 -2 222 83 7 896 1877 124 27 7 chr4 40808312 40808603 -114821517 + RLTR20D LTR ERVK 1 297 -271 7 896 1270 25 19 6 chr4 40808603 40808761 -114821359 + B2_Mm1a SINE B2 1 160 -33 7 896 702 0 0 0 chr4 40808761 40808839 -114821281 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 7 896 1324 165 113 27 chr4 40808841 40808986 -114821134 + RLTR20D LTR ERVK 291 461 -107 7 896 1191 35 14 0 chr4 40808986 40809128 -114820992 + B1_Mur4 SINE Alu 1 144 -6 7 896 1324 165 113 27 chr4 40809128 40809238 -114820882 + RLTR20D LTR ERVK 462 568 0 7 896 450 253 0 0 chr4 40809238 40809325 -114820795 - B3A SINE B2 -111 87 1 7 896 433 247 11 0 chr4 40809325 40809417 -114820703 - ID_B1 SINE B4 -129 95 3 7 896 682 285 44 11 chr4 40809444 40809625 -114820495 + B3 SINE B2 3 189 -27 7 896 397 236 36 9 chr4 40809729 40809840 -114820280 + L1MC LINE L1 3776 3889 -2257 7 896 24 67 0 0 chr4 40809840 40809885 -114820235 + AT_rich Low_complexity Low_complexity 1 45 0 7 896 412 202 114 23 chr4 40809908 40809983 -114820137 - B1_Mus1 SINE Alu 0 148 75 7 896 641 144 53 8 chr4 40809983 40810116 -114820004 - Lx9 LINE L1 -1 7643 7505 7 896 412 202 114 23 chr4 40810116 40810172 -114819948 - B1_Mus1 SINE Alu -74 74 5 7 896 1200 48 0 20 chr4 40810894 40811043 -114819077 + B1_Mus1 SINE Alu 3 148 0 7 896 237 139 0 0 chr4 40811053 40811096 -114819024 + (A)n Simple_repeat Simple_repeat 1 43 0 7 896 371 213 63 11 chr4 40811628 40811723 -114818397 - MLT1C-int LTR MaLR -1296 113 14 7 896 637 345 4 59 chr4 40811752 40811989 -114818131 + MER58A DNA MER1_type 1 224 0 7 896 1107 77 0 0 chr4 40812172 40812327 -114817793 + (TTCC)n Simple_repeat Simple_repeat 3 157 0 7 896 565 226 90 0 chr4 40812330 40812463 -114817657 - B1_Mus2 SINE Alu -2 145 1 7 896 268 356 161 0 chr4 40812463 40812643 -114817477 - MLT1G1 LTR MaLR -35 544 336 7 896 627 243 0 0 chr4 40812637 40812748 -114817372 - B1_Mus2 SINE Alu -36 111 1 7 896 659 168 126 0 chr4 40812779 40812898 -114817222 - ID_B1 SINE B4 0 224 91 7 896 868 44 8 26 chr4 40813027 40813144 -114816976 + B1_Mus1 SINE Alu 34 148 0 7 896 234 331 55 77 chr4 40813318 40813501 -114816619 + ORR1D2 LTR MaLR 6 184 -186 7 896 275 238 218 0 chr4 40813607 40813632 -114816488 + B1F SINE Alu 15 137 -12 7 896 375 237 26 0 chr4 40813632 40813708 -114816412 + ID_B1 SINE B4 135 212 -12 7 896 210 37 0 0 chr4 40813728 40813755 -114816365 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 896 1216 180 14 0 chr4 40813948 40814159 -114815961 + B3 SINE B2 2 215 -1 7 896 234 276 0 0 chr4 40814248 40814306 -114815814 + MLT1K LTR MaLR 180 237 -358 7 896 256 324 0 14 chr4 40814383 40814455 -114815665 - MLT1C LTR MaLR 0 467 397 7 896 958 137 14 0 chr4 40814452 40814591 -114815529 + B1_Mur1 SINE Alu 9 149 0 7 896 234 268 55 27 chr4 40814593 40814666 -114815454 - MLT1C LTR MaLR -58 409 335 7 896 731 274 62 47 chr4 40814685 40814896 -114815224 + B3 SINE B2 2 215 -1 7 896 1349 203 170 9 chr4 40815040 40815363 -114814757 - MTEb LTR MaLR -4 375 1 7 896 351 234 142 65 chr4 40815419 40815468 -114814652 - MLT1C LTR MaLR -231 236 182 7 896 289 274 26 34 chr4 40815468 40815585 -114814535 - PB1D10 SINE Alu 0 117 2 7 896 351 234 142 65 chr4 40815585 40815704 -114814416 - MLT1C LTR MaLR -286 181 55 7 896 529 284 0 16 chr4 40816189 40816318 -114813802 + RSINE1 SINE B4 4 130 -35 7 896 958 248 4 70 chr4 40816436 40816611 -114813509 - B3 SINE B2 0 216 47 7 896 1925 62 8 0 chr4 40816611 40816853 -114813267 + L1Md_T LINE L1 6339 6582 0 7 896 958 248 4 70 chr4 40816853 40816907 -114813213 - B3 SINE B2 -170 46 2 7 896 656 235 17 9 chr4 40816913 40817062 -114813058 - B1F SINE Alu -1 149 6 7 896 237 246 0 34 chr4 40817591 40817684 -114812436 + C-rich Low_complexity Low_complexity 1 89 0 7 896 331 222 0 0 chr4 40818016 40818079 -114812041 + ID4 SINE ID 15 77 -6 7 896 232 325 12 12 chr4 40818888 40818969 -114811151 - ID4_ SINE ID -2 81 1 7 896 953 145 0 14 chr4 40819134 40819281 -114810839 + B1_Mur4 SINE Alu 5 149 -1 7 896 1754 177 101 9 chr4 40819536 40819884 -114810236 + ORR1C2 LTR MaLR 4 383 -1 7 896 563 270 0 51 chr4 40820146 40820302 -114809818 - B1_Mur1 SINE Alu 0 149 2 7 896 207 100 0 0 chr4 40821839 40821869 -114808251 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 896 391 210 36 24 chr4 40822162 40822245 -114807875 + B1F1 SINE Alu 2 85 -64 7 896 1060 84 0 0 chr4 40822270 40822412 -114807708 - B1_Mus2 SINE Alu 0 147 6 7 896 704 243 0 14 chr4 40822415 40822553 -114807567 + B1_Mur1 SINE Alu 3 138 -11 7 896 596 50 12 0 chr4 40822556 40822636 -114807484 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 896 688 266 118 31 chr4 40822676 40822905 -114807215 + B4A SINE B4 2 250 -42 7 896 423 0 0 0 chr4 40822906 40822953 -114807167 + (CACG)n Simple_repeat Simple_repeat 1 47 0 7 896 214 180 16 32 chr4 40823337 40823400 -114806720 + T-rich Low_complexity Low_complexity 3 64 0 7 896 223 337 23 58 chr4 40823409 40823428 -114806692 - B2_Mm2 SINE B2 -18 177 11 7 896 560 316 13 13 chr4 40823428 40823582 -114806538 - RSINE1 SINE B4 0 165 12 7 896 185 297 68 0 chr4 40825099 40825173 -114804947 - L2 LINE L2 -609 2810 2732 7 896 382 294 136 92 chr4 40825388 40825547 -114804573 + L1M5 LINE L1 2274 2417 -3798 7 896 429 20 0 0 chr4 40825547 40825597 -114804523 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 896 382 294 136 92 chr4 40825597 40825688 -114804432 + L1M5 LINE L1 2418 2535 -3680 7 896 240 35 0 0 chr4 40825771 40825800 -114804320 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 896 284 195 25 93 chr4 40825836 40825952 -114804168 - B3 SINE B2 -96 99 1 7 896 287 43 54 68 chr4 40825964 40826038 -114804082 + T-rich Low_complexity Low_complexity 1 73 0 7 896 1239 61 0 0 chr4 40826038 40826185 -114803935 - B1_Mus2 SINE Alu 0 147 1 7 896 504 77 223 71 chr4 40826186 40826298 -114803822 - B1_Mm SINE Alu 0 147 19 7 896 855 174 21 0 chr4 40826327 40826471 -114803649 - B1_Mus1 SINE Alu 0 148 2 7 896 1237 108 11 0 chr4 40826541 40826717 -114803403 + B2_Mm1t SINE B2 2 179 -14 7 896 312 146 0 36 chr4 40826765 40826832 -114803288 + B2_Mm2 SINE B2 47 109 -107 7 896 263 55 0 69 chr4 40826821 40826879 -114803241 + B2_Mm2 SINE B2 137 190 -5 7 896 576 192 51 58 chr4 40827021 40827159 -114802961 + B1F1 SINE Alu 1 137 -12 7 896 453 36 0 0 chr4 40827159 40827214 -114802906 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 7 896 1015 74 15 7 chr4 40827273 40827429 -114802691 + B1_Mus1 SINE Alu 1 149 -1 7 896 1154 157 7 148 chr4 40827448 40827725 -114802395 + ORR1B1 LTR MaLR 119 356 -38 7 896 912 277 43 35 chr4 40827780 40828128 -114801992 + L1MB2 LINE L1 5793 6143 -28 7 896 626 233 104 47 chr4 40828145 40828357 -114801763 + ID_B1 SINE B4 1 224 0 7 896 280 215 15 30 chr4 40828380 40828447 -114801673 + B1F SINE Alu 81 146 -3 7 896 204 125 0 0 chr4 40828534 40828566 -114801554 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 896 1529 33 27 16 chr4 40828584 40828771 -114801349 - B2_Mm1a SINE B2 -3 190 2 7 896 425 301 58 7 chr4 40828967 40829121 -114800999 - RSINE1 SINE B4 -2 163 2 8 896 303 193 0 0 chr4 40829224 40829307 -114800813 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 896 344 203 29 0 chr4 40829547 40829616 -114800504 - ID4_ SINE ID -10 73 3 8 896 413 224 30 2 chr4 40829621 40829713 -114800407 - PB1D10 SINE Alu -9 111 10 8 896 691 236 17 17 chr4 40830300 40830481 -114799639 + B3A SINE B2 2 182 -16 8 896 344 333 14 22 chr4 40830653 40830791 -114799329 + MIRc SINE MIR 77 213 -55 8 896 234 234 0 0 chr4 40830800 40830847 -114799273 + B1_Mur4 SINE Alu 8 54 -96 8 896 389 194 17 287 chr4 40830808 40830869 -114799251 + ID_B1 SINE B4 96 146 -78 8 896 1054 200 19 0 chr4 40830869 40831079 -114799041 + B3 SINE B2 3 216 0 8 896 389 194 17 287 chr4 40831079 40831191 -114798929 + ID_B1 SINE B4 147 222 -2 8 896 1019 216 10 24 chr4 40832276 40832485 -114797635 + B3 SINE B2 1 206 -10 8 896 731 234 21 0 chr4 40832499 40832640 -114797480 + B1_Mur1 SINE Alu 1 144 -5 8 896 395 366 106 43 chr4 40832834 40833088 -114797032 + MER34A1 LTR ERV1 36 305 -282 8 896 186 246 14 71 chr4 40833322 40833392 -114796728 + L3 LINE CR1 2609 2674 -1815 8 896 239 277 191 26 chr4 40833383 40833535 -114796585 + MIRc SINE MIR 48 224 -44 8 896 435 279 53 116 chr4 40833783 40834143 -114795977 + MLT1C LTR MaLR 1 354 -36 8 896 382 321 81 29 chr4 40834453 40834626 -114795494 - MTE2a LTR MaLR -66 313 132 8 896 1179 184 43 0 chr4 40834642 40834849 -114795271 - B3 SINE B2 0 216 1 8 896 258 254 14 29 chr4 40834851 40834920 -114795200 + MLT1C LTR MaLR 271 338 -52 8 896 270 0 0 0 chr4 40834989 40835019 -114795101 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 896 1050 114 0 0 chr4 40835019 40835159 -114794961 - B1_Mur4 SINE Alu -9 141 2 8 896 859 157 0 22 chr4 40835162 40835299 -114794821 - B1F SINE Alu -1 148 15 8 896 359 299 47 95 chr4 40835167 40835315 -114794805 - B4 SINE B4 -69 223 83 8 896 258 279 74 90 chr4 40835208 40835330 -114794790 - MT2B LTR ERVL -343 258 139 8 896 318 202 157 37 chr4 40835429 40835445 -114794675 + B1F SINE Alu 11 131 -18 8 896 407 200 65 22 chr4 40835445 40835537 -114794583 + ID_B1 SINE B4 111 206 -18 8 896 234 296 58 48 chr4 40835849 40835952 -114794168 - LTR16D LTR ERVL -15 636 533 8 896 421 240 94 0 chr4 40836036 40836132 -114793988 - MLT1A1 LTR MaLR -32 376 272 8 896 450 0 0 0 chr4 40836545 40836595 -114793525 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 896 959 114 0 6 chr4 40836673 40836849 -114793271 + (TG)n Simple_repeat Simple_repeat 2 176 0 8 896 418 282 92 17 chr4 40836869 40836988 -114793132 - RSINE1 SINE B4 -26 139 12 8 896 240 252 68 39 chr4 40837739 40837842 -114792278 + ID4 SINE ID 4 109 -43 8 896 493 204 75 37 chr4 40837926 40838033 -114792087 - PB1D9 SINE Alu -2 118 8 8 896 254 222 59 109 chr4 40837947 40838048 -114792072 - MT2B LTR ERVL -350 251 156 8 896 438 108 0 0 chr4 40838192 40838257 -114791863 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 896 542 116 242 0 chr4 40838915 40839010 -114791110 + B1_Mus2 SINE Alu 5 122 -25 8 896 384 159 284 18 chr4 40839010 40839024 -114791096 + ID_B1 SINE B4 86 223 -1 8 896 399 278 66 46 chr4 40839089 40839164 -114790956 - MER5A DNA MER1_type -6 183 111 8 896 791 168 72 7 chr4 40839164 40839302 -114790818 + B1_Mur1 SINE Alu 3 149 0 8 896 399 278 66 46 chr4 40839302 40839377 -114790743 - MER5A DNA MER1_type -79 110 30 8 896 184 421 56 0 chr4 40839465 40839572 -114790548 - L2b LINE L2 -23 3352 3240 8 896 311 290 42 21 chr4 40839590 40839685 -114790435 + RSINE1 SINE B4 69 165 0 8 896 310 299 41 0 chr4 40839847 40839944 -114790176 - PB1 SINE Alu -25 102 2 8 896 527 297 47 42 chr4 40840057 40840250 -114789870 + ID_B1 SINE B4 29 222 -2 8 896 2145 146 85 8 chr4 40840380 40840746 -114789374 - ORR1B1 LTR MaLR 0 394 1 8 896 234 191 0 0 chr4 40840755 40840802 -114789318 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 8 896 907 152 21 0 chr4 40840905 40841050 -114789070 - B1_Mur4 SINE Alu -1 149 2 8 896 2976 137 59 16 chr4 40841200 40841691 -114788429 + ORR1A2-int LTR MaLR 1452 1963 0 8 896 2242 71 5 138 chr4 40841691 40842012 -114788108 + ORR1A2 LTR MaLR 1 286 -41 8 896 1290 40 0 0 chr4 40842012 40842160 -114787960 + B1_Mus1 SINE Alu 1 148 0 8 896 2242 71 5 138 chr4 40842160 40842215 -114787905 + ORR1A2 LTR MaLR 287 327 0 8 896 861 259 64 13 chr4 40842241 40842476 -114787644 + LTR41 LTR ERVL 520 766 -2 8 896 664 235 7 7 chr4 40842608 40842745 -114787375 + ID_B1 SINE B4 86 222 -2 8 896 870 228 34 0 chr4 40842769 40842975 -114787145 + B3 SINE B2 4 216 0 8 896 248 350 150 0 chr4 40843141 40843261 -114786859 + LTR33 LTR ERVL 29 166 -349 8 896 280 289 11 89 chr4 40843288 40843478 -114786642 + C-rich Low_complexity Low_complexity 3 177 0 8 896 288 0 0 0 chr4 40843490 40843522 -114786598 + (CCA)n Simple_repeat Simple_repeat 3 34 0 8 896 980 186 93 0 chr4 40844153 40844347 -114785773 - B3 SINE B2 0 216 5 8 896 1327 87 49 0 chr4 40844800 40844983 -114785137 + B2_Mm2 SINE B2 3 194 -1 8 896 1942 117 59 190 chr4 40845068 40845288 -114784832 - RLTR23 LTR ERV1 0 430 227 8 896 1683 158 75 48 chr4 40845288 40845687 -114784433 - RMER17C LTR ERVK 0 410 1 8 896 1942 117 59 190 chr4 40845687 40845961 -114784159 - RLTR23 LTR ERV1 -204 226 1 8 896 325 279 127 70 chr4 40846008 40846166 -114783954 + L1ME4a LINE L1 5868 6034 -90 8 896 301 311 71 66 chr4 40846206 40846230 -114783890 - B3A SINE B2 -1 197 56 8 896 830 210 0 48 chr4 40846230 40846395 -114783725 - RSINE1 SINE B4 0 165 9 8 896 242 308 0 37 chr4 40846686 40846767 -114783353 + GA-rich Low_complexity Low_complexity 3 80 0 8 896 1954 158 53 33 chr4 40847082 40847101 -114783019 + ORR1D1 LTR MaLR 8 23 -351 8 896 2837 75 11 0 chr4 40847101 40847461 -114782659 + RLTR8 LTR ERVK 2 365 0 8 896 1954 158 53 33 chr4 40847461 40847801 -114782319 + ORR1D1 LTR MaLR 24 374 0 8 896 186 43 0 0 chr4 40848038 40848061 -114782059 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 8 896 198 0 0 0 chr4 40848084 40848106 -114782014 + (CAA)n Simple_repeat Simple_repeat 3 24 0 8 896 228 276 0 50 chr4 40848456 40848536 -114781584 + ID4_ SINE ID 2 77 -6 8 896 1303 48 71 0 chr4 40848472 40848640 -114781480 + B2_Mm2 SINE B2 16 195 0 8 896 284 258 53 63 chr4 40848942 40849037 -114781083 - MER5A1 DNA MER1_type -35 131 38 8 896 204 293 86 0 chr4 40849241 40849299 -114780821 + L2c LINE L2 3324 3386 -1 8 896 1381 94 16 5 chr4 40849355 40849548 -114780572 - ORR1B1 LTR MaLR 0 394 200 8 896 2154 208 72 66 chr4 40849548 40850105 -114780015 - RLTR20B2 LTR ERVK 0 560 1 8 896 677 175 123 12 chr4 40850105 40850265 -114779855 - ORR1B2 LTR MaLR -189 178 1 8 896 256 297 0 39 chr4 40850550 40850627 -114779493 + B4A SINE B4 147 220 -72 8 896 992 204 39 15 chr4 40850638 40850842 -114779278 + B3 SINE B2 2 210 -6 8 896 225 203 28 28 chr4 40850848 40850919 -114779201 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 8 896 359 38 0 37 chr4 40850919 40850973 -114779147 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 8 896 1189 64 0 0 chr4 40850975 40851116 -114779004 - B1_Mus1 SINE Alu -6 142 2 8 896 31 0 0 0 chr4 40851130 40851161 -114778959 + AT_rich Low_complexity Low_complexity 1 31 0 8 896 239 222 123 0 chr4 40851261 40851342 -114778778 + RMER1B Other Other 63 153 -913 8 896 655 270 64 57 chr4 40851517 40851868 -114778252 + RMER1C Other Other 565 867 -475 8 896 666 272 65 52 chr4 40851870 40852118 -114778002 + RMER1C Other Other 1063 1313 -29 8 896 1237 112 37 11 chr4 40852118 40852307 -114777813 + B2_Mm2 SINE B2 1 194 -1 8 896 271 319 44 0 chr4 40852308 40852399 -114777721 + B4A SINE B4 198 292 0 8 896 247 288 0 0 chr4 40852354 40852413 -114777707 + B3A SINE B2 120 178 -20 8 896 470 213 11 21 chr4 40852746 40852867 -114777253 - PB1D10 SINE Alu 0 117 1 8 896 256 244 49 118 chr4 40852782 40852884 -114777236 - MT2B2 LTR ERVL -344 240 146 8 896 547 212 36 86 chr4 40853014 40853153 -114776967 + B1_Mur1 SINE Alu 18 149 0 8 896 689 129 9 0 chr4 40853170 40853286 -114776834 + (GGAAA)n Simple_repeat Simple_repeat 2 118 0 8 896 612 227 68 8 chr4 40853300 40853433 -114776687 + ID_B1 SINE B4 82 222 -2 8 896 617 242 8 0 chr4 40853654 40853782 -114776338 - RSINE1 SINE B4 -35 130 2 8 896 192 77 0 0 chr4 40853827 40853853 -114776267 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 8 896 747 211 15 9 chr4 40853853 40854008 -114776112 - B1_Mur1 SINE Alu 0 149 1 8 896 359 47 0 0 chr4 40854155 40854198 -114775922 + RMER10B LTR ERVL 356 398 0 8 896 441 219 31 10 chr4 40854211 40854308 -114775812 - RLTR23 LTR ERV1 0 430 332 8 896 311 221 80 23 chr4 40854389 40854477 -114775643 - Lx8 LINE L1 -1526 6170 6078 8 896 627 254 18 87 chr4 40854570 40854836 -114775284 + Lx7 LINE L1 6882 7149 -324 8 896 1483 50 17 0 chr4 40854836 40855016 -114775104 + B2_Mm2 SINE B2 1 183 -12 8 896 567 284 41 122 chr4 40855016 40855118 -114775002 + Lx7 LINE L1 7150 7226 -247 8 896 387 0 0 0 chr4 40856019 40856062 -114774058 + (CTTG)n Simple_repeat Simple_repeat 4 46 0 8 896 302 205 27 3 chr4 40856082 40856174 -114773946 - B1_Mur3 SINE Alu 0 149 25 8 896 202 152 0 61 chr4 40856333 40856348 -114773772 + (TTTA)n Simple_repeat Simple_repeat 1 15 0 8 896 656 218 34 40 chr4 40856348 40856496 -114773624 - B1_Mur1 SINE Alu -1 148 2 8 896 202 152 0 61 chr4 40856496 40856529 -114773591 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 896 1332 89 28 0 chr4 40856533 40856713 -114773407 + B2_Mm2 SINE B2 2 186 -9 8 896 1723 16 0 0 chr4 40856722 40856912 -114773208 + B2_Mm1a SINE B2 2 191 -2 9 896 859 225 25 129 chr4 40856933 40857173 -114772947 - B3 SINE B2 -1 215 1 9 896 771 40 70 0 chr4 40857184 40857284 -114772836 - BC1_Mm scRNA scRNA -45 107 1 9 896 1102 136 104 36 chr4 40857300 40857522 -114772598 - RMER1B Other Other -399 667 431 9 896 2319 165 177 0 chr4 40857587 40858244 -114771876 + RMER1B Other Other 68 840 -226 9 896 592 284 73 62 chr4 40858245 40858452 -114771668 + RLTR12B LTR ERVK 1 232 -296 9 896 288 0 0 0 chr4 40858452 40858484 -114771636 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 896 441 0 0 0 chr4 40858484 40858532 -114771588 + (GA)n Simple_repeat Simple_repeat 1 49 0 9 896 592 281 75 61 chr4 40858532 40858562 -114771558 + RLTR12B LTR ERVK 233 260 -268 9 896 1282 37 110 0 chr4 40858565 40858728 -114771392 + B2_Mm2 SINE B2 1 181 -14 9 896 1115 32 217 0 chr4 40860394 40860551 -114769569 + B2_Mm2 SINE B2 1 191 -4 9 896 791 224 3 117 chr4 40860713 40860996 -114769124 + RMER1A Other Other 769 1019 -11 9 896 1458 80 37 0 chr4 40861210 40861397 -114768723 + B2_Mm2 SINE B2 2 195 0 9 896 1603 250 54 23 chr4 40861423 40861906 -114768214 + RMER5 LTR ERV1 21 518 -16 9 896 1176 90 0 40 chr4 40862037 40862211 -114767909 + URR1B DNA MER1_type 59 225 0 9 896 260 27 0 26 chr4 40862597 40862635 -114767485 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 9 896 1236 71 0 0 chr4 40863581 40863736 -114766384 + B2_Mm2 SINE B2 2 156 -39 9 896 394 242 9 75 chr4 40863739 40863846 -114766274 - B3A SINE B2 0 198 99 9 896 1239 87 14 11 chr4 40864665 40864854 -114765266 - B2_Mm2 SINE B2 -1 215 23 9 896 332 306 19 111 chr4 40864966 40865128 -114764992 - RSINE1 SINE B4 -8 157 11 9 896 1075 208 40 0 chr4 40865345 40865547 -114764573 - B3 SINE B2 0 216 7 9 896 259 182 0 15 chr4 40865568 40865635 -114764485 + (TA)n Simple_repeat Simple_repeat 2 67 0 9 896 709 239 22 3 chr4 40865689 40865857 -114764263 + B3A SINE B2 40 213 -3 9 896 932 203 96 0 chr4 40865893 40866090 -114764030 + B3 SINE B2 1 216 0 9 896 1191 42 14 0 chr4 40866100 40866244 -114763876 - B1_Mm SINE Alu 0 147 2 9 896 1233 113 32 0 chr4 40866282 40866468 -114763652 + B2_Mm1t SINE B2 1 192 -1 9 896 382 299 165 51 chr4 40867687 40868300 -114761820 - L2a LINE L2 -40 3386 2705 9 896 279 190 17 0 chr4 40869407 40869465 -114760655 - L1ME2z LINE L1 -335 6109 6051 9 896 1032 135 29 6 chr4 40869468 40869639 -114760481 + B2_Mm2 SINE B2 1 175 -20 9 896 255 183 12 112 chr4 40869621 40869642 -114760478 + MT2B LTR ERVL 151 163 -438 9 896 213 209 40 118 chr4 40869642 40869718 -114760402 + B1_Mus1 SINE Alu 1 70 -78 9 896 608 180 9 35 chr4 40869714 40869829 -114760291 - B1F1 SINE Alu -3 146 35 9 896 287 237 136 34 chr4 40869834 40869952 -114760168 - L1ME2z LINE L1 -344 5818 5689 9 896 218 243 230 0 chr4 40870402 40870476 -114759644 + MIRc SINE MIR 33 123 -145 9 896 293 359 147 9 chr4 40870596 40870821 -114759299 - LTR16A LTR ERVL -170 281 26 9 896 22 35 0 0 chr4 40870921 40870950 -114759170 + AT_rich Low_complexity Low_complexity 1 29 0 9 896 6456 42 36 0 chr4 40871074 40871854 -114758266 - RLTR13C2 LTR ERVK 0 808 1 9 896 229 296 194 28 chr4 40872442 40872634 -114757486 - MIR SINE MIR -23 239 21 9 896 355 245 117 10 chr4 40872650 40872753 -114757367 - PB1D7 SINE Alu 0 120 7 9 896 576 238 57 10 chr4 40872930 40873034 -114757086 + B4 SINE B4 1 139 -153 9 896 2363 115 16 0 chr4 40873034 40873356 -114756764 + ORR1A2 LTR MaLR 1 327 0 9 896 10791 117 23 54 chr4 40873356 40875205 -114754915 + ORR1A2-int LTR MaLR 1 1792 0 9 896 2262 99 48 3 chr4 40875205 40875518 -114754602 + ORR1A2 LTR MaLR 1 327 0 9 896 576 267 58 43 chr4 40875518 40875665 -114754455 + B4 SINE B4 140 290 -2 9 896 531 82 0 0 chr4 40875869 40875942 -114754178 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 896 1155 74 0 26 chr4 40876580 40876732 -114753388 - B1_Mus1 SINE Alu 0 148 1 9 896 210 343 29 39 chr4 40876842 40876945 -114753175 + MIRm SINE MIR 91 192 -84 9 896 459 0 0 0 chr4 40877088 40877139 -114752981 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 9 896 1218 227 95 57 chr4 40877164 40877657 -114752463 - RLTR26 LTR ERVK -103 539 1 9 896 214 179 26 0 chr4 40877698 40877737 -114752383 - ID4_ SINE ID -4 79 40 9 896 238 297 117 19 chr4 40877759 40877862 -114752258 - B1F SINE Alu -1 148 36 9 896 318 271 31 78 chr4 40879013 40879141 -114750979 - L2b LINE L2 -221 3154 3033 9 896 484 303 0 0 chr4 40879302 40879411 -114750709 - PB1D7 SINE Alu -10 110 2 9 896 210 318 149 0 chr4 40879426 40879533 -114750587 - L2b LINE L2 -541 2878 2756 9 896 794 239 181 40 chr4 40879539 40879875 -114750245 - MTE2b LTR MaLR 0 379 30 9 896 897 222 53 11 chr4 40879892 40880079 -114750041 + B3A SINE B2 2 196 -2 9 896 237 132 0 0 chr4 40880216 40880254 -114749866 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 9 896 678 236 109 21 chr4 40880254 40880457 -114749663 + B3 SINE B2 1 216 0 9 896 825 247 92 81 chr4 40880572 40880845 -114749275 - B4 SINE B4 -16 276 1 9 896 304 259 155 16 chr4 40881187 40881294 -114748826 + PB1D10 SINE Alu 12 123 -26 9 896 493 92 40 10 chr4 40881300 40881399 -114748721 + (GA)n Simple_repeat Simple_repeat 2 103 0 9 896 903 245 25 10 chr4 40881457 40881655 -114748465 + B3 SINE B2 1 201 -15 9 896 3219 9 0 0 chr4 40881656 40882002 -114748118 + ORR1A0 LTR MaLR 1 346 0 9 896 1078 120 0 0 chr4 40882313 40882463 -114747657 + B1_Mur4 SINE Alu 1 150 0 9 896 537 198 145 8 chr4 40882486 40882603 -114747517 + B1_Mus2 SINE Alu 1 133 -14 9 896 475 132 5 77 chr4 40882638 40883086 -114747034 + GA-rich Low_complexity Low_complexity 1 415 0 9 896 1083 90 28 0 chr4 40884547 40884691 -114745429 - B1_Mus1 SINE Alu 0 148 1 9 896 414 0 0 0 chr4 40884899 40884945 -114745175 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 896 836 247 142 72 chr4 40885025 40885215 -114744905 - MTD LTR MaLR -17 402 213 9 896 1085 65 43 0 chr4 40885215 40885354 -114744766 - B1_Mus2 SINE Alu -1 146 2 9 896 979 240 25 0 chr4 40885364 40885564 -114744556 - B3 SINE B2 -11 205 1 9 896 836 254 144 108 chr4 40885564 40885759 -114744361 - MTD LTR MaLR -211 208 1 9 896 1095 144 36 21 chr4 40885885 40886077 -114744043 + B2_Mm2 SINE B2 1 195 0 9 896 1203 251 11 26 chr4 40886536 40886571 -114743549 - B4A SINE B4 -27 265 231 9 896 2319 110 67 14 chr4 40886571 40886929 -114743191 + ORR1C1 LTR MaLR 1 377 -1 9 896 1203 251 11 26 chr4 40886929 40887159 -114742961 - B4A SINE B4 -62 230 4 9 896 255 263 91 100 chr4 40887317 40887427 -114742693 - PB1D10 SINE Alu -8 109 1 9 896 1296 34 0 0 chr4 40887928 40888075 -114742045 + B1_Mus2 SINE Alu 1 147 0 9 896 280 88 35 0 chr4 40888075 40888132 -114741988 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 9 896 443 309 66 52 chr4 40888274 40888486 -114741634 + B3A SINE B2 2 216 0 9 896 591 247 26 13 chr4 40888947 40889099 -114741021 + B3 SINE B2 33 186 -30 9 896 383 269 0 28 chr4 40889273 40889380 -114740740 - ID_B1 SINE B4 0 224 121 9 896 216 220 16 33 chr4 40889478 40889539 -114740581 - MIRb SINE MIR -21 247 188 9 896 1600 37 16 0 chr4 40890418 40890608 -114739512 + B2_Mm2 SINE B2 1 193 -2 9 896 285 290 176 11 chr4 40890797 40890985 -114739135 + Lx8 LINE L1 7104 7322 -151 9 896 358 155 0 0 chr4 40891099 40891157 -114738963 + B3 SINE B2 1 58 -158 9 896 450 255 13 54 chr4 40891163 40891312 -114738808 + B1_Mur1 SINE Alu 5 147 -2 9 896 760 154 14 42 chr4 40891355 40891497 -114738623 + B1_Mus2 SINE Alu 10 147 0 9 896 180 0 0 0 chr4 40891523 40891543 -114738577 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9 896 877 218 64 10 chr4 40891731 40891935 -114738185 - B3 SINE B2 -1 215 1 9 896 26 0 0 0 chr4 40891945 40891971 -114738149 + AT_rich Low_complexity Low_complexity 1 26 0 9 896 233 286 16 0 chr4 40892250 40892313 -114737807 + CT-rich Low_complexity Low_complexity 2 65 0 9 896 900 240 15 15 chr4 40892744 40892947 -114737173 + B3 SINE B2 1 203 -13 9 896 705 157 0 16 chr4 40893009 40893138 -114736982 + B1_Mur4 SINE Alu 24 150 0 9 897 215 255 224 9 chr4 40896957 40897064 -114733056 + MIRb SINE MIR 66 195 -73 9 897 447 268 81 0 chr4 40898232 40898355 -114731765 + ID_B1 SINE B4 91 223 -1 9 897 563 264 28 7 chr4 40898356 40898497 -114731623 + ID_B1 SINE B4 81 224 0 9 897 343 290 28 0 chr4 40898634 40898741 -114731379 - PB1D10 SINE Alu -7 110 1 9 897 384 255 108 0 chr4 40899088 40899190 -114730930 + PB1D7 SINE Alu 2 114 -6 9 897 1032 122 14 0 chr4 40899538 40899686 -114730434 - B1_Mur4 SINE Alu 0 150 1 9 897 504 165 61 10 chr4 40899773 40899871 -114730249 - B3A SINE B2 -92 106 4 9 897 278 182 30 15 chr4 40899901 40899968 -114730152 + ID4_ SINE ID 1 68 -15 9 897 986 136 14 7 chr4 40900416 40900564 -114729556 - B1_Mur4 SINE Alu -1 149 1 9 897 640 281 18 8 chr4 40900675 40900868 -114729252 - B3A SINE B2 -19 197 6 9 897 350 324 28 0 chr4 40900885 40900993 -114729127 - B1F SINE Alu -8 141 31 9 897 31 76 0 0 chr4 40901142 40901208 -114728912 + AT_rich Low_complexity Low_complexity 1 66 0 9 897 26 50 0 0 chr4 40901221 40901261 -114728859 + AT_rich Low_complexity Low_complexity 1 40 0 9 897 1147 76 0 0 chr4 40901274 40901419 -114728701 + B1_Mus2 SINE Alu 3 147 0 9 897 857 170 14 0 chr4 40901450 40901591 -114728529 + B1_Mur4 SINE Alu 2 144 -6 1 897 586 267 47 21 chr4 40901593 40901784 -114728336 - B3A SINE B2 -1 197 2 1 897 217 250 138 15 chr4 40901987 40902052 -114728068 + PB1D10 SINE Alu 2 74 -43 1 897 1235 53 24 0 chr4 40902054 40902223 -114727897 + B2_Mm2 SINE B2 1 173 -22 1 897 237 271 114 96 chr4 40902223 40902274 -114727846 + ID_B1 SINE B4 1 224 0 1 897 376 224 23 12 chr4 40902338 40902424 -114727696 - PB1D7 SINE Alu -5 115 29 1 897 2342 203 28 28 chr4 40902673 40903180 -114726940 - RLTR18B LTR ERVK -5 507 1 1 897 226 295 0 90 chr4 40903280 40903347 -114726773 - ID4 SINE ID 0 83 23 1 897 233 338 0 13 chr4 40903288 40903363 -114726757 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 1 897 1356 91 16 36 chr4 40903434 40903628 -114726492 + B2_Mm2 SINE B2 1 190 -5 1 897 737 225 134 0 chr4 40903738 40903925 -114726195 - B3 SINE B2 -1 215 4 1 897 415 282 70 48 chr4 40903946 40904132 -114725988 - B3 SINE B2 -19 197 8 1 897 214 307 40 13 chr4 40904167 40904243 -114725877 + ID4 SINE ID 4 81 -2 1 897 722 167 171 37 chr4 40904283 40904470 -114725650 - B3 SINE B2 -3 213 2 1 897 657 235 33 114 chr4 40904516 40904727 -114725393 + ID_B1 SINE B4 4 197 -27 1 897 545 277 24 36 chr4 40904845 40905010 -114725110 + RSINE1 SINE B4 3 165 0 1 897 192 158 0 0 chr4 40905025 40905063 -114725057 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 897 218 200 0 0 chr4 40905258 40905298 -114724822 + (ATG)n Simple_repeat Simple_repeat 2 41 0 1 897 561 204 255 0 chr4 40905298 40905455 -114724665 + B3A SINE B2 1 197 -1 1 897 827 156 57 0 chr4 40906125 40906266 -114723854 + B1_Mur4 SINE Alu 1 149 -1 1 897 600 211 104 8 chr4 40906284 40906418 -114723702 + B1_Mur3 SINE Alu 2 148 -1 1 897 309 252 117 0 chr4 40906715 40906818 -114723302 - RSINE1 SINE B4 -47 118 4 1 897 232 208 38 0 chr4 40907699 40907752 -114722368 + PB1D9 SINE Alu 49 103 -17 1 897 289 197 0 0 chr4 40908393 40908455 -114721665 - PB1 SINE Alu 0 127 55 1 897 413 81 16 0 chr4 40908621 40908683 -114721437 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 897 298 286 14 0 chr4 40908683 40908753 -114721367 - ID4_ SINE ID -10 73 3 1 897 242 322 0 0 chr4 40908814 40908873 -114721247 - FLAM_A SINE Alu -218 77 19 1 897 886 219 40 15 chr4 40908927 40909126 -114720994 + B3 SINE B2 2 205 -11 1 897 1359 89 0 6 chr4 40909232 40909412 -114720708 + B2_Mm2 SINE B2 2 180 -15 1 897 648 227 128 11 chr4 40909434 40909621 -114720499 + ID_B1 SINE B4 3 211 -13 1 897 1930 197 42 7 chr4 40910045 40910450 -114719670 - MTC LTR MaLR -2 419 1 1 897 221 274 0 75 chr4 40910774 40910841 -114719279 - ID4_ SINE ID -20 63 2 1 897 239 78 78 0 chr4 40911089 40911140 -114718980 - B2_Mm1t SINE B2 0 193 139 1 897 189 0 0 0 chr4 40911140 40911161 -114718959 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1 897 272 56 0 0 chr4 40911161 40911197 -114718923 - B2_Mm1a SINE B2 -33 160 125 1 897 1454 57 0 0 chr4 40911231 40911406 -114718714 - B2_Mm2 SINE B2 -19 176 2 1 897 1170 62 0 0 chr4 40912465 40912610 -114717510 - B1_Mus2 SINE Alu 0 147 3 1 897 683 168 286 0 chr4 40912821 40912982 -114717138 - B3 SINE B2 -9 207 1 1 897 857 270 112 3 chr4 40913009 40913347 -114716773 + MTEa LTR MaLR 1 375 -4 1 897 553 274 39 11 chr4 40913902 40914083 -114716037 + MTD LTR MaLR 2 187 -232 1 897 1311 93 38 0 chr4 40914398 40914581 -114715539 - B2_Mm2 SINE B2 -5 190 1 1 897 23 0 0 0 chr4 40914594 40914617 -114715503 + AT_rich Low_complexity Low_complexity 1 23 0 1 897 1181 68 0 0 chr4 40914620 40914767 -114715353 - B1_Mus1 SINE Alu 0 148 2 1 897 1141 320 43 24 chr4 40914792 40915259 -114714861 - Lx8 LINE L1 -143 7330 6855 1 897 656 273 7 0 chr4 40915525 40915664 -114714456 - RSINE1 SINE B4 -23 142 3 1 897 408 20 0 0 chr4 40915824 40915873 -114714247 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 897 418 232 32 89 chr4 40915911 40916036 -114714084 + B3A SINE B2 93 208 -8 1 897 405 284 35 0 chr4 40916160 40916276 -114713844 + RSINE1 SINE B4 4 123 -42 1 897 661 199 30 0 chr4 40916791 40916922 -114713198 - B1_Mur1 SINE Alu -9 140 6 1 897 240 100 0 0 chr4 40918387 40918427 -114711693 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1 897 288 0 0 0 chr4 40918796 40918828 -114711292 + (A)n Simple_repeat Simple_repeat 1 32 0 1 897 254 224 92 0 chr4 40918951 40919027 -114711093 + B3 SINE B2 88 170 -46 1 897 724 172 39 0 chr4 40919128 40919256 -114710864 + B1_Mur1 SINE Alu 4 136 -13 1 897 1389 132 18 9 chr4 40919882 40920104 -114710016 - URR1B DNA MER1_type -1 224 1 1 897 1249 79 57 0 chr4 40920355 40920532 -114709588 - B2_Mm1t SINE B2 -6 187 1 1 897 28 0 0 0 chr4 40920559 40920587 -114709533 + AT_rich Low_complexity Low_complexity 1 28 0 1 897 561 207 66 0 chr4 40920611 40920732 -114709388 - B3 SINE B2 -86 130 2 1 897 750 226 28 33 chr4 40921297 40921509 -114708611 + B3A SINE B2 1 194 -1 1 897 216 271 0 0 chr4 40921511 40921570 -114708550 + MIR SINE MIR 182 240 -22 1 897 1303 87 5 26 chr4 40921765 40921954 -114708166 + B2_Mm2 SINE B2 1 185 -10 1 897 35 0 0 0 chr4 40921954 40921989 -114708131 + AT_rich Low_complexity Low_complexity 1 35 0 1 897 325 142 0 5 chr4 40922025 40922090 -114708030 + B2_Mm2 SINE B2 47 109 -107 1 897 628 245 29 0 chr4 40922169 40922308 -114707812 + B1F1 SINE Alu 1 143 -6 1 897 213 262 0 0 chr4 40922394 40922436 -114707684 + polypyrimidine Low_complexity Low_complexity 3 44 0 1 897 520 177 204 0 chr4 40922438 40922551 -114707569 - B1_Mur1 SINE Alu -8 141 6 1 897 501 239 35 21 chr4 40924621 40924766 -114705354 - B1F1 SINE Alu 0 149 3 1 897 180 0 0 0 chr4 40924911 40924931 -114705189 + (CATCT)n Simple_repeat Simple_repeat 1 20 0 1 897 209 57 0 28 chr4 40925221 40925257 -114704863 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 897 234 169 11 88 chr4 40925265 40925356 -114704764 + T-rich Low_complexity Low_complexity 2 85 0 1 897 619 192 25 0 chr4 40925365 40925485 -114704635 - B1_Mus1 SINE Alu 0 148 26 1 897 777 194 46 34 chr4 40925523 40925705 -114704415 - B3 SINE B2 0 198 15 1 897 674 201 44 7 chr4 40925710 40925845 -114704275 - B1_Mur1 SINE Alu 0 149 10 1 897 658 253 60 27 chr4 40925859 40926042 -114704078 - B3A SINE B2 -6 192 4 1 897 369 252 86 17 chr4 40926050 40926167 -114703953 - B1_Mus1 SINE Alu -8 140 16 1 897 620 222 28 7 chr4 40926495 40926640 -114703480 - B1F2 SINE Alu 0 149 2 1 897 419 165 118 0 chr4 40927165 40927250 -114702870 - B1_Mus2 SINE Alu -52 95 1 1 897 465 209 0 21 chr4 40927299 40927392 -114702728 - PB1D10 SINE Alu -4 113 23 1 897 232 82 82 0 chr4 40927715 40927776 -114702344 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 897 713 236 62 38 chr4 40927912 40928123 -114701997 - ID_B1 SINE B4 -8 216 1 1 897 425 203 147 59 chr4 40928133 40928269 -114701851 - B1_Mur1 SINE Alu -1 148 1 1 897 838 106 39 78 chr4 40928541 40928555 -114701565 - B1_Mus1 SINE Alu 0 148 140 1 897 297 0 0 0 chr4 40928555 40928588 -114701532 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 897 838 106 39 78 chr4 40928588 40928727 -114701393 - B1_Mus1 SINE Alu -9 139 1 1 897 859 205 108 81 chr4 40928736 40928831 -114701289 + MTD LTR MaLR 115 208 -211 1 897 815 182 189 22 chr4 40928831 40929016 -114701104 + B3 SINE B2 1 216 0 1 897 859 205 108 81 chr4 40929016 40929217 -114700903 + MTD LTR MaLR 209 419 0 1 897 382 284 64 0 chr4 40930091 40930200 -114699920 - PB1D10 SINE Alu 0 117 2 1 897 213 321 156 29 chr4 40930205 40930449 -114699671 - L2a LINE L2 -174 3252 2978 1 897 686 272 7 0 chr4 40930533 40930680 -114699440 + B3 SINE B2 1 148 -68 1 897 297 269 30 0 chr4 40930772 40930839 -114699281 - ID4_ SINE ID -14 69 1 1 897 268 291 50 36 chr4 40930847 40930986 -114699134 - B1F SINE Alu -8 141 1 1 897 181 267 262 43 chr4 40931022 40931163 -114698957 - L2a LINE L2 -668 2751 2580 1 897 293 280 93 0 chr4 40931294 40931401 -114698719 + PB1D10 SINE Alu 1 117 0 1 897 215 298 60 60 chr4 40931581 40931681 -114698439 - PB1D10 SINE Alu 0 117 18 1 897 803 158 29 0 chr4 40932108 40932247 -114697873 + B1_Mus1 SINE Alu 6 148 0 1 897 304 323 75 30 chr4 40932411 40932545 -114697575 + RSINE1 SINE B4 3 142 -23 1 897 416 231 185 0 chr4 40932608 40932716 -114697404 + B1_Mur2 SINE Alu 6 133 -16 1 897 1711 26 0 0 chr4 40932838 40933030 -114697090 - B2_Mm1t SINE B2 -1 192 1 1 897 476 165 97 0 chr4 40933428 40933531 -114696589 - PB1D9 SINE Alu -6 114 2 1 897 228 319 29 0 chr4 40933569 40933638 -114696482 - tRNA-Ala-GCY_ tRNA tRNA -3 72 2 1 897 636 201 67 7 chr4 40934104 40934239 -114695881 - B1_Mur1 SINE Alu -5 144 2 1 897 425 188 12 0 chr4 40934654 40934734 -114695386 - ID4 SINE ID -2 81 1 1 897 248 276 162 54 chr4 40935869 40935980 -114694140 - MIRb SINE MIR -12 256 134 1 897 356 200 0 14 chr4 40936301 40936372 -114693748 - B2_Mm2 SINE B2 -123 72 3 1 897 320 269 25 42 chr4 40936682 40936802 -114693318 - PB1D7 SINE Alu -1 119 2 1 897 475 181 32 0 chr4 40936845 40936939 -114693181 + RSINE1 SINE B4 9 105 -60 1 897 233 119 24 0 chr4 40937382 40937424 -114692696 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1 897 216 293 17 0 chr4 40937424 40937482 -114692638 - ID4 SINE ID -13 70 12 1 897 621 186 198 9 chr4 40937524 40937709 -114692411 - MTD LTR MaLR -183 213 13 1 897 613 264 47 21 chr4 40938452 40938642 -114691478 + B3A SINE B2 1 195 -3 1 897 456 266 54 79 chr4 40939056 40939258 -114690862 + L1M5 LINE L1 5432 5627 -546 1 897 735 229 47 71 chr4 40939537 40939749 -114690371 - B3 SINE B2 -2 214 8 1 897 27 29 0 0 chr4 40939766 40939800 -114690320 + AT_rich Low_complexity Low_complexity 1 34 0 1 897 236 28 0 53 chr4 40940068 40940106 -114690014 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 897 1216 48 0 0 chr4 40940106 40940253 -114689867 - B1_Mus2 SINE Alu 0 147 1 1 897 23 33 0 0 chr4 40940347 40940377 -114689743 + AT_rich Low_complexity Low_complexity 1 30 0 1 897 649 173 440 0 chr4 40941250 40941400 -114688720 + B3 SINE B2 1 216 0 1 897 242 217 0 0 chr4 40941901 40941947 -114688173 - B1F SINE Alu -101 48 3 1 897 415 243 51 24 chr4 40942301 40942433 -114687687 - PB1D10 SINE Alu 0 149 11 1 897 283 252 254 23 chr4 40942329 40942459 -114687661 - ID_B1 SINE B4 -1 223 64 1 897 551 228 177 11 chr4 40942515 40942701 -114687419 + ID_B1 SINE B4 2 218 -6 1 897 490 216 8 51 chr4 40942752 40942869 -114687251 + RSINE1 SINE B4 11 122 -43 1 897 422 167 25 13 chr4 40942894 40942973 -114687147 + B1_Mur4 SINE Alu 11 90 -60 1 897 520 217 76 15 chr4 40943032 40943163 -114686957 - B1_Mur2 SINE Alu -10 139 1 1 897 244 359 0 0 chr4 40943218 40943296 -114686824 + ID4 SINE ID 2 79 -4 1 897 453 239 25 58 chr4 40943352 40943472 -114686648 + PB1D10 SINE Alu 2 117 0 1 897 298 295 77 82 chr4 40944395 40944565 -114685555 - MER77 LTR ERVL -234 373 205 1 897 700 190 35 21 chr4 40945524 40945669 -114684451 - B1_Mus2 SINE Alu 0 147 1 1 897 450 0 0 0 chr4 40945731 40945781 -114684339 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1 897 481 233 155 0 chr4 40945804 40945933 -114684187 - B1F SINE Alu 0 149 1 1 897 273 291 117 0 chr4 40946311 40946414 -114683706 - PB1D10 SINE Alu -2 115 1 1 897 468 273 112 32 chr4 40946751 40947001 -114683119 + L1ME2z LINE L1 6007 6276 -168 1 897 287 400 8 17 chr4 40947003 40947120 -114683000 + ID_B1 SINE B4 85 200 -24 1 897 258 328 126 25 chr4 40947157 40947276 -114682844 + B4 SINE B4 10 140 -152 1 897 26 0 0 0 chr4 40947663 40947689 -114682431 + AT_rich Low_complexity Low_complexity 1 26 0 1 897 777 242 55 18 chr4 40947701 40947865 -114682255 + B3 SINE B2 10 179 -37 1 897 804 133 82 0 chr4 40948007 40948142 -114681978 - B2_Mm2 SINE B2 0 195 50 1 897 347 357 24 12 chr4 40948377 40948547 -114681573 - L1MB5 LINE L1 -11 6163 5992 1 897 492 241 46 0 chr4 40948635 40948795 -114681325 - L1MB5 LINE L1 -1929 5856 5678 1 897 436 262 151 0 chr4 40948812 40948938 -114681182 - ID_B1 SINE B4 0 224 80 1 897 541 283 0 52 chr4 40948977 40949130 -114680990 - B1F SINE Alu 0 149 5 1 897 714 250 7 0 chr4 40949141 40949289 -114680831 - ID_B1 SINE B4 0 224 76 1 897 324 213 120 37 chr4 40949376 40949605 -114680515 - L1MB5 LINE L1 -785 5389 5142 1 897 275 250 94 0 chr4 40949605 40949669 -114680451 - ID4_ SINE ID 0 83 14 1 897 457 284 104 6 chr4 40950408 40950571 -114679549 - B3A SINE B2 -19 179 1 1 897 463 289 0 66 chr4 40950703 40950840 -114679280 - B1_Mm SINE Alu -1 146 19 1 897 578 293 56 2 chr4 40950826 40951024 -114679096 + B4 SINE B4 75 287 -5 1 897 650 177 23 53 chr4 40951492 40951623 -114678497 + B1_Mur2 SINE Alu 21 147 -2 1 897 2034 62 0 0 chr4 40952125 40952381 -114677739 - L1_Mus2 LINE L1 0 6566 6311 1 897 528 319 42 0 chr4 40952533 40952677 -114677443 + RSINE1 SINE B4 12 161 -4 1 897 195 129 0 0 chr4 40952681 40952712 -114677408 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 897 23 33 0 0 chr4 40952734 40952764 -114677356 + AT_rich Low_complexity Low_complexity 1 30 0 1 897 21 0 0 0 chr4 40952855 40952876 -114677244 + AT_rich Low_complexity Low_complexity 1 21 0 1 897 26 30 0 0 chr4 40952923 40952956 -114677164 + AT_rich Low_complexity Low_complexity 1 33 0 1 897 378 0 0 0 chr4 40952956 40952998 -114677122 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 897 337 225 241 9 chr4 40953009 40953121 -114676999 - B3 SINE B2 -76 140 3 1 897 332 301 101 47 chr4 40953301 40953430 -114676690 - B1F2 SINE Alu -10 139 4 1 897 627 293 45 0 chr4 40953498 40953631 -114676489 - RSINE1 SINE B4 -19 146 8 1 897 585 214 106 38 chr4 40953645 40953805 -114676315 - B3 SINE B2 0 216 46 1 897 1453 53 0 37 chr4 40953805 40954024 -114676096 - B2_Mm1a SINE B2 -2 193 2 1 897 1007 175 40 97 chr4 40954105 40954333 -114675787 - URR1B DNA MER1_type 0 225 11 1 897 2164 186 145 31 chr4 40954501 40955017 -114675103 - RMER15 LTR ERVL 0 575 1 1 897 524 80 116 0 chr4 40955176 40955261 -114674859 - B1_Mus2 SINE Alu -2 145 54 1 897 904 241 20 0 chr4 40955669 40955872 -114674248 - B3 SINE B2 -8 208 2 1 897 548 308 12 65 chr4 40956469 40956639 -114673481 + RSINE1 SINE B4 3 163 -2 1 897 861 173 164 22 chr4 40956669 40956852 -114673268 - B3 SINE B2 -6 210 2 1 897 382 286 18 18 chr4 40957012 40957126 -114672994 + RSINE1 SINE B4 3 116 -49 1 897 780 221 104 16 chr4 40957171 40957364 -114672756 + B3 SINE B2 2 211 -5 1 897 315 291 119 0 chr4 40957387 40957521 -114672599 + RSINE1 SINE B4 2 151 -14 1 897 180 0 0 0 chr4 40957523 40957543 -114672577 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 897 1271 63 63 6 chr4 40957551 40957726 -114672394 - B2_Mm2 SINE B2 -9 186 2 1 897 230 262 0 0 chr4 40957796 40957838 -114672282 - ID4_ SINE ID -11 72 31 1 897 369 270 121 58 chr4 40957982 40958206 -114671914 + MTE2a LTR MaLR 182 419 0 1 897 2356 246 176 52 chr4 40958227 40959289 -114670831 + MTE2a-int LTR MaLR 6 1578 -2 1 897 1474 179 48 117 chr4 40959289 40959681 -114670439 + MTE2a LTR MaLR 1 365 -14 1 897 600 200 39 7 chr4 40959889 40960020 -114670100 - PB1D9 SINE Alu -22 126 2 1 897 325 275 34 76 chr4 40959926 40960044 -114670076 - MT2B LTR ERVL -351 250 138 1 897 476 285 97 8 chr4 40960084 40960208 -114669912 - ID_B1 SINE B4 -9 215 81 1 897 191 299 187 52 chr4 40960327 40960461 -114669659 - L2b LINE L2 -95 3280 3129 1 897 210 275 150 0 chr4 40960552 40960632 -114669488 + B1F SINE Alu 46 137 -12 1 897 459 238 49 10 chr4 40960686 40960788 -114669332 + PB1D10 SINE Alu 1 106 -11 1 897 630 0 0 0 chr4 40960927 40960997 -114669123 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 897 458 304 82 0 chr4 40961007 40961142 -114668978 - RSINE1 SINE B4 -17 148 3 1 897 889 140 15 0 chr4 40961605 40961741 -114668379 + B1_Mur4 SINE Alu 2 139 -11 1 897 370 300 105 32 chr4 40961879 40962003 -114668117 + RSINE1 SINE B4 20 152 -13 1 897 224 338 24 48 chr4 40962048 40962132 -114667988 + ID4_ SINE ID 2 83 0 1 897 694 301 6 0 chr4 40963420 40963583 -114666537 - RSINE1 SINE B4 0 165 2 1 897 1325 111 16 0 chr4 40963599 40963788 -114666332 + B2_Mm2 SINE B2 1 192 -3 1 897 518 264 98 49 chr4 40963811 40963994 -114666126 + B3 SINE B2 2 193 -23 1 897 324 310 40 53 chr4 40964031 40964181 -114665939 + RSINE1 SINE B4 3 150 -15 1 897 403 344 13 50 chr4 40964577 40964599 -114665521 - ID_B1 SINE B4 -38 254 177 1 897 674 243 15 0 chr4 40964599 40964735 -114665385 - B1_Mur1 SINE Alu 0 149 12 1 897 403 344 13 50 chr4 40964735 40964763 -114665357 - ID_B1 SINE B4 -38 176 67 1 897 183 306 15 46 chr4 40965163 40965228 -114664892 + L2b LINE L2 3304 3366 -9 1 897 429 344 0 8 chr4 40965700 40965829 -114664291 + B1F SINE Alu 1 128 -21 1 897 252 295 0 13 chr4 40965950 40966040 -114664080 - ID4 SINE ID -60 92 6 1 897 320 196 18 0 chr4 40966019 40966075 -114664045 - B1_Mur4 SINE Alu -65 85 29 1 897 306 245 98 89 chr4 40966192 40966304 -114663816 - PB1D9 SINE Alu -1 119 7 1 897 493 237 145 11 chr4 40966328 40966507 -114663613 - L1M5 LINE L1 -506 5667 5465 1 897 222 37 0 0 chr4 40966558 40966585 -114663535 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1 897 844 254 43 29 chr4 40966622 40966829 -114663291 - B3 SINE B2 0 216 7 1 897 218 265 40 81 chr4 40966958 40967032 -114663088 - B3A SINE B2 -127 71 1 1 897 746 246 40 0 chr4 40967194 40967369 -114662751 - B3 SINE B2 -34 182 1 1 897 353 327 139 13 chr4 40967371 40967529 -114662591 + Tigger7 DNA MER2_type 118 295 -2196 1 897 257 316 50 10 chr4 40967668 40967767 -114662353 + B1_Mus1 SINE Alu 27 129 -19 1 897 422 243 68 0 chr4 40967773 40967876 -114662244 + ID_B1 SINE B4 112 221 -3 1 897 238 250 44 0 chr4 40967977 40968045 -114662075 + Tigger7 DNA MER2_type 2337 2407 -84 1 897 363 207 319 0 chr4 40968045 40968214 -114661906 + ID_B1 SINE B4 1 223 -1 1 897 798 115 189 49 chr4 40968224 40968388 -114661732 + B2_Mm2 SINE B2 1 187 -8 1 897 407 294 149 4 chr4 40968390 40968622 -114661498 + B4 SINE B4 11 275 -17 1 897 791 105 0 0 chr4 40969589 40969694 -114660426 + B1_Mur4 SINE Alu 35 139 -11 1 897 651 230 43 0 chr4 40969921 40970060 -114660060 + B1_Mur2 SINE Alu 3 147 -2 1 897 387 0 0 0 chr4 40970060 40970103 -114660017 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 897 540 0 0 0 chr4 40970103 40970163 -114659957 + (GAA)n Simple_repeat Simple_repeat 2 61 0 1 897 1063 121 0 7 chr4 40972806 40972956 -114657164 - B1_Mur4 SINE Alu -1 149 1 1 897 346 246 61 43 chr4 40973032 40973147 -114656973 - PB1D10 SINE Alu 0 117 1 1 897 737 180 0 8 chr4 40973668 40973791 -114656329 + B3 SINE B2 9 130 -86 1 897 48 43 0 0 chr4 40973798 40973867 -114656253 + AT_rich Low_complexity Low_complexity 1 69 0 1 897 949 70 13 71 chr4 40975603 40975757 -114654363 - B1_Mus2 SINE Alu 0 147 3 1 897 473 210 22 88 chr4 40975637 40975773 -114654347 - MT2B LTR ERVL -322 279 153 1 897 1738 16 0 0 chr4 40975813 40976005 -114654115 - B2_Mm1a SINE B2 0 193 2 1 897 238 268 100 67 chr4 40976060 40976280 -114653840 - L2a LINE L2 -319 3107 2881 1 897 341 229 104 43 chr4 40976304 40976468 -114653652 + B3A SINE B2 25 198 0 1 897 597 278 15 35 chr4 40976545 40976746 -114653374 - L2a LINE L2 -733 2686 2490 1 897 1150 93 26 52 chr4 40976755 40976947 -114653173 + B2_Mm2 SINE B2 1 187 -8 1 897 192 339 15 0 chr4 40977333 40977398 -114652722 - MIR SINE MIR -113 149 84 1 897 307 202 238 0 chr4 40977449 40977533 -114652587 - PB1 SINE Alu 0 127 24 1 897 504 0 0 0 chr4 40977566 40977622 -114652498 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 897 281 247 99 0 chr4 40977849 40977934 -114652186 - MIR SINE MIR -164 104 10 1 897 258 259 181 17 chr4 40978646 40978823 -114651297 + L2a LINE L2 2918 3123 -303 1 897 366 241 0 0 chr4 40979386 40979494 -114650626 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 897 754 186 27 7 chr4 40979859 40980005 -114650115 + B1_Mur1 SINE Alu 1 149 0 1 897 22 35 0 0 chr4 40980111 40980140 -114649980 + AT_rich Low_complexity Low_complexity 1 29 0 1 897 1240 28 0 0 chr4 40980142 40980283 -114649837 + B1_Mus1 SINE Alu 2 142 -6 1 897 932 106 12 12 chr4 40980285 40980448 -114649672 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1 897 816 221 75 42 chr4 40980452 40980665 -114649455 + ID_B1 SINE B4 1 220 -4 1 897 260 303 39 29 chr4 40981026 40981047 -114649073 + B4A SINE B4 68 89 -203 1 897 459 259 29 11 chr4 40981047 40981179 -114648941 + B1F2 SINE Alu 2 130 -19 1 897 208 239 41 27 chr4 40982779 40982852 -114647268 - MIR SINE MIR -115 147 74 1 897 259 314 46 56 chr4 40983552 40983660 -114646460 - MIRc SINE MIR -111 157 51 1 897 461 308 8 0 chr4 40983762 40983879 -114646241 + RSINE1 SINE B4 2 119 -46 1 897 1218 61 0 0 chr4 40983879 40984026 -114646094 + B1_Mus1 SINE Alu 2 148 0 1 897 501 268 91 14 chr4 40984303 40984511 -114645609 + MER33 DNA MER1_type 101 324 0 1 897 849 140 20 20 chr4 40984710 40984841 -114645279 + B1_Mur4 SINE Alu 5 138 -12 1 897 1077 118 0 0 chr4 40984841 40985010 -114645110 + (GGAAA)n Simple_repeat Simple_repeat 3 171 0 1 897 849 140 20 20 chr4 40985010 40985024 -114645096 + B1_Mur4 SINE Alu 139 150 0 1 897 287 246 7 38 chr4 40985285 40985364 -114644756 - PB1 SINE Alu -2 125 39 1 897 239 293 27 0 chr4 40985427 40985502 -114644618 - ID4 SINE ID -1 82 6 1 897 327 167 0 0 chr4 40985611 40985677 -114644443 + GA-rich Low_complexity Low_complexity 1 66 0 1 897 467 215 65 9 chr4 40985892 40986000 -114644120 + B1_Mur1 SINE Alu 2 115 -34 1 897 861 262 46 57 chr4 40986019 40986088 -114644032 + B4A SINE B4 9 73 -219 1 897 6412 61 28 19 chr4 40986088 40986935 -114643185 + RLTR13A LTR ERVK 1 855 0 1 897 861 262 46 57 chr4 40986935 40987148 -114642972 + B4A SINE B4 74 288 -4 1 897 189 0 0 0 chr4 40987258 40987279 -114642841 + (A)n Simple_repeat Simple_repeat 1 21 0 1 897 354 195 3 0 chr4 40987728 40987801 -114642319 - B1F1 SINE Alu -43 74 1 1 897 314 294 45 77 chr4 40987937 40988092 -114642028 + MER102b DNA MER1_type 135 284 -57 1 897 207 284 50 50 chr4 40988238 40988338 -114641782 - L3 LINE CR1 -588 3901 3802 1 897 197 265 90 20 chr4 40988383 40988483 -114641637 - MIRb SINE MIR -43 225 119 1 897 384 281 11 191 chr4 40988640 40988718 -114641402 + MIRb SINE MIR 97 154 -114 1 897 851 147 29 0 chr4 40988718 40988854 -114641266 + B1_Mur2 SINE Alu 1 140 -9 1 897 384 281 11 191 chr4 40988854 40988964 -114641156 + MIRb SINE MIR 155 251 -17 1 897 298 325 17 17 chr4 40988986 40989102 -114641018 + PB1D10 SINE Alu 1 116 -1 1 897 1121 50 58 0 chr4 40989134 40989273 -114640847 + B1_Mus1 SINE Alu 1 147 -1 1 897 264 56 0 0 chr4 40989273 40989304 -114640816 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 897 594 75 0 0 chr4 40989304 40989384 -114640736 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 897 782 149 28 28 chr4 40989394 40989539 -114640581 + B1_Mur3 SINE Alu 5 149 0 1 897 682 157 7 7 chr4 40989540 40989681 -114640439 + GA-rich Low_complexity Low_complexity 2 142 0 1 897 523 320 13 32 chr4 40989695 40989850 -114640270 + RSINE1 SINE B4 6 157 -8 1 897 278 280 80 0 chr4 40989953 40990028 -114640092 + ID4 SINE ID 3 83 0 1 897 222 222 0 0 chr4 40990322 40990376 -114639744 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 897 198 0 0 0 chr4 40990398 40990420 -114639700 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 897 917 136 7 52 chr4 40990421 40990563 -114639557 + B1_Mur3 SINE Alu 1 137 -12 1 897 438 108 0 0 chr4 40990563 40990628 -114639492 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1 897 917 136 7 52 chr4 40990628 40990640 -114639480 + B1_Mur3 SINE Alu 138 148 -1 1 897 678 210 81 22 chr4 40990653 40990838 -114639282 + B3A SINE B2 3 198 0 1 897 25 0 0 0 chr4 40990841 40990866 -114639254 + AT_rich Low_complexity Low_complexity 1 25 0 1 897 207 294 55 73 chr4 40991059 40991169 -114638951 - MIR SINE MIR -66 142 35 1 897 379 333 6 74 chr4 40991542 40991717 -114638403 - RSINE1 SINE B4 0 165 3 1 897 212 284 142 87 chr4 40991778 40991905 -114638215 - ID_B1 SINE B4 -21 203 70 1 897 484 302 0 20 chr4 40991941 40992093 -114638027 - B1F SINE Alu 0 149 1 1 897 265 287 106 0 chr4 40995971 40996065 -114634055 + B1F SINE Alu 20 123 -26 1 897 325 243 0 0 chr4 40996094 40996164 -114633956 + B1_Mur1 SINE Alu 73 142 -7 1 897 316 182 13 132 chr4 40996183 40996259 -114633861 + ID_B1 SINE B4 140 206 -18 1 897 520 178 8 92 chr4 40996298 40996428 -114633692 - B1_Mm SINE Alu -20 127 9 1 897 377 20 20 0 chr4 40996446 40996496 -114633624 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 897 1258 48 0 0 chr4 40996580 40996735 -114633385 + B2_Mm2 SINE B2 1 156 -37 1 897 324 0 0 0 chr4 40996735 40996771 -114633349 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 897 1145 135 5 21 chr4 40996771 40996804 -114633316 + B2_Mm1t SINE B2 157 185 -8 1 897 1036 85 35 7 chr4 40996843 40996974 -114633146 + B1_Mus2 SINE Alu 2 137 -10 1 897 569 14 14 0 chr4 40996974 40997044 -114633076 + (GAA)n Simple_repeat Simple_repeat 2 72 0 1 897 932 164 0 14 chr4 40997084 40997232 -114632888 + B1_Mus1 SINE Alu 2 147 -1 1 897 518 158 47 47 chr4 40997252 40997358 -114632762 + U6 snRNA snRNA 1 106 -1 1 897 446 96 18 46 chr4 40997453 40997562 -114632558 + G-rich Low_complexity Low_complexity 1 106 0 1 897 303 87 0 0 chr4 40997583 40997629 -114632491 + B1_Mus2 SINE Alu 102 147 0 1 897 1059 58 29 17 chr4 40997668 40997842 -114632278 + (GAAAA)n Simple_repeat Simple_repeat 5 180 0 1 897 714 200 0 7 chr4 40998132 40998268 -114631852 + B1_Mus2 SINE Alu 2 136 -11 1 897 1298 104 0 49 chr4 40998666 40998707 -114631413 - B2_Mm2 SINE B2 -1 194 163 1 897 180 0 0 0 chr4 40998707 40998727 -114631393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 897 1298 104 0 49 chr4 40998727 40998888 -114631232 - B2_Mm2 SINE B2 -33 162 2 1 897 367 228 9 33 chr4 40999426 40999527 -114630593 + RLTR20A2 LTR ERVK 453 566 -12 1 897 252 0 0 0 chr4 40999545 40999573 -114630547 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 897 1076 58 0 0 chr4 40999620 40999758 -114630362 + B1_Mus2 SINE Alu 10 147 0 1 897 322 203 0 0 chr4 40999805 40999864 -114630256 + U4 snRNA snRNA 3 61 -84 1 897 643 121 53 66 chr4 41000014 41000165 -114629955 - B1_Mur4 SINE Alu 0 150 2 1 897 258 32 0 0 chr4 41000261 41000292 -114629828 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 897 384 22 0 0 chr4 41000292 41000336 -114629784 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 897 411 297 77 20 chr4 41000660 41000725 -114629395 + ID SINE ID 5 80 -144 4 897 679 196 15 0 chr4 41000725 41000858 -114629262 + B1_Mus2 SINE Alu 2 136 -11 5 897 204 158 0 0 chr4 41000867 41000905 -114629215 + GA-rich Low_complexity Low_complexity 1 38 0 6 897 376 315 0 16 chr4 41000941 41001070 -114629050 + B1_Mus1 SINE Alu 20 146 -2 7 897 614 197 44 29 chr4 41001070 41001206 -114628914 - B1_Mur1 SINE Alu 0 149 12 8 897 351 0 0 0 chr4 41001206 41001245 -114628875 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 897 569 169 98 23 chr4 41001669 41001802 -114628318 - B1_Mur1 SINE Alu -4 145 3 1 897 406 186 189 24 chr4 41002529 41002656 -114627464 + B1_Mur2 SINE Alu 1 148 -1 1 897 785 98 141 15 chr4 41002741 41002876 -114627244 - B2_Mm2 SINE B2 -43 152 1 1 897 1145 62 0 14 chr4 41002918 41003066 -114627054 - B1_Mus2 SINE Alu 0 147 2 1 897 342 0 0 0 chr4 41003194 41003232 -114626888 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 897 205 258 0 0 chr4 41003257 41003323 -114626797 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 897 260 262 30 15 chr4 41003342 41003408 -114626712 - RSINE1 SINE B4 -29 136 70 1 897 361 292 89 24 chr4 41003415 41003538 -114626582 - ID_B1 SINE B4 -6 218 88 1 897 639 159 0 0 chr4 41003546 41003659 -114626461 + CT-rich Low_complexity Low_complexity 1 113 0 1 897 211 122 0 68 chr4 41003659 41003703 -114626417 - B1_Mus2 SINE Alu -16 131 91 1 897 228 114 0 0 chr4 41003701 41003736 -114626384 - B1_Mur4 SINE Alu -115 35 1 2 897 257 286 101 37 chr4 41003740 41003849 -114626271 - PB1D10 SINE Alu -1 116 1 2 897 315 0 0 0 chr4 41003893 41003928 -114626192 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 897 438 20 0 0 chr4 41004777 41004828 -114625292 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 2 897 21 36 0 0 chr4 41004967 41004995 -114625125 + AT_rich Low_complexity Low_complexity 1 28 0 2 897 303 28 0 0 chr4 41005055 41005091 -114625029 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 897 1270 88 22 6 chr4 41005277 41005460 -114624660 + B2_Mm2 SINE B2 1 186 -9 2 897 615 190 90 18 chr4 41005521 41005687 -114624433 - B3A SINE B2 -14 184 7 2 897 1185 65 0 0 chr4 41005717 41005872 -114624248 + (TG)n Simple_repeat Simple_repeat 2 156 0 2 897 634 197 84 0 chr4 41005873 41006015 -114624105 - B3A SINE B2 -44 154 1 2 897 1002 83 21 0 chr4 41006043 41006187 -114623933 + B1_Mus2 SINE Alu 1 147 0 3 897 202 197 54 0 chr4 41006293 41006440 -114623680 + (CA)n Simple_repeat Simple_repeat 1 155 0 3 897 506 179 0 0 chr4 41006472 41006567 -114623553 - B1_Mur3 SINE Alu -21 128 34 3 897 1076 45 138 19 chr4 41006802 41006961 -114623159 - B2_Mm2 SINE B2 -16 179 2 3 897 1502 57 5 0 chr4 41007755 41007947 -114622173 + B2_Mm1a SINE B2 1 193 0 3 897 430 280 10 0 chr4 41008247 41008347 -114621773 - B1_Mur1 SINE Alu -31 118 18 3 897 594 133 38 9 chr4 41008367 41008473 -114621647 + B2_Mm2 SINE B2 1 109 -86 3 897 335 265 9 56 chr4 41008473 41008545 -114621575 - Lx9 LINE L1 -274 7370 7303 3 897 1656 139 14 110 chr4 41008545 41008592 -114621528 - ORR1A4 LTR MaLR 0 329 287 3 897 1637 26 0 0 chr4 41008592 41008785 -114621335 - B2_Mm1a SINE B2 0 193 1 3 897 1656 139 14 110 chr4 41008785 41009101 -114621019 - ORR1A4 LTR MaLR -43 286 1 3 897 537 270 393 13 chr4 41009101 41009324 -114620796 - Lx9 LINE L1 -342 7302 6995 3 897 333 157 158 63 chr4 41009533 41009545 -114620575 - ID_B1 SINE B4 -5 219 211 4 897 425 19 19 0 chr4 41009545 41009599 -114620521 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 897 333 157 158 63 chr4 41009599 41009681 -114620439 - ID_B1 SINE B4 -14 210 116 4 897 363 267 186 32 chr4 41009748 41009872 -114620248 - ID_B1 SINE B4 0 224 82 4 897 279 133 0 0 chr4 41010081 41010126 -114619994 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 897 344 131 316 9 chr4 41011924 41012038 -114618082 - B2_Mm2 SINE B2 0 195 47 4 897 1135 114 11 6 chr4 41012104 41012281 -114617839 - B2_Mm1t SINE B2 -14 179 2 4 897 275 238 0 100 chr4 41013302 41013372 -114616748 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 4 897 469 349 81 57 chr4 41013488 41013871 -114616249 - MTD LTR MaLR -27 392 1 4 897 549 0 0 0 chr4 41013889 41013950 -114616170 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 897 366 283 29 130 chr4 41014207 41014392 -114615728 - MER63D DNA AcHobo -3 1058 894 4 897 322 288 65 0 chr4 41014392 41014531 -114615589 + B1F1 SINE Alu 2 149 0 5 897 366 283 29 130 chr4 41014531 41014621 -114615499 - MER63D DNA AcHobo -168 893 811 4 897 1147 232 86 10 chr4 41014749 41015115 -114615005 + RMER19C LTR ERVK 26 484 -127 5 897 1093 64 0 0 chr4 41015115 41015256 -114614864 + B1_Mus1 SINE Alu 1 141 -7 5 897 801 152 0 0 chr4 41015257 41015395 -114614725 + GA-rich Low_complexity Low_complexity 1 138 0 5 897 690 206 0 14 chr4 41015399 41015542 -114614578 + RMER19C LTR ERVK 471 611 0 5 897 351 65 0 0 chr4 41015616 41015662 -114614458 + (TATG)n Simple_repeat Simple_repeat 1 46 0 5 897 404 316 86 7 chr4 41015664 41015804 -114614316 - RSINE1 SINE B4 -11 154 4 5 897 243 0 0 0 chr4 41015818 41015845 -114614275 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 897 560 233 9 0 chr4 41015857 41015973 -114614147 - RSINE1 SINE B4 -21 144 28 5 897 392 0 21 0 chr4 41015981 41016029 -114614091 + (TGAG)n Simple_repeat Simple_repeat 1 49 0 5 897 456 314 14 14 chr4 41016031 41016170 -114613950 - B1F2 SINE Alu -8 141 3 5 897 2969 47 0 3 chr4 41016200 41016584 -114613536 - L1Md_F2 LINE L1 0 6582 6200 6 897 272 282 34 121 chr4 41016851 41017040 -114613080 + RLTR8 LTR ERVK 203 375 0 6 897 338 0 0 23 chr4 41017052 41017095 -114613025 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 897 4888 57 13 0 chr4 41017095 41017731 -114612389 - L1_Mus1 LINE L1 -10 6557 5914 6 897 1189 61 0 0 chr4 41017731 41017878 -114612242 - B1_Mus2 SINE Alu 0 147 1 6 897 754 129 75 15 chr4 41017886 41018020 -114612100 - B1_Mur4 SINE Alu -7 143 2 6 897 544 311 54 38 chr4 41018020 41018334 -114611786 - ID_B1 SINE B4 -65 227 4 6 897 1312 58 0 55 chr4 41018418 41018617 -114611503 + B2_Mm2 SINE B2 2 189 -6 6 897 457 262 20 46 chr4 41018685 41018837 -114611283 - B1F SINE Alu 0 149 2 6 897 851 289 71 10 chr4 41018959 41019256 -114610864 - MER63D DNA AcHobo -742 319 5 4 897 234 0 0 0 chr4 41020220 41020246 -114609874 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 897 324 64 364 9 chr4 41020777 41020887 -114609233 - B2_Mm2 SINE B2 0 195 47 7 897 999 109 84 6 chr4 41020919 41021085 -114609035 - B2_Mm1t SINE B2 -14 179 1 7 897 1426 58 16 5 chr4 41021095 41021285 -114608835 - B2_Mm2 SINE B2 -3 192 1 7 897 280 333 0 10 chr4 41021317 41021420 -114608700 + PB1D7 SINE Alu 1 102 -18 7 897 235 307 0 13 chr4 41021963 41022039 -114608081 - L2 LINE L2 -542 2877 2803 7 897 264 298 79 40 chr4 41022389 41022478 -114607642 + B1F SINE Alu 1 90 -59 7 897 234 0 0 0 chr4 41022478 41022504 -114607616 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 7 897 264 298 79 40 chr4 41022504 41022540 -114607580 + B1F SINE Alu 91 131 -18 7 897 21 0 0 0 chr4 41022569 41022590 -114607530 + AT_rich Low_complexity Low_complexity 1 21 0 7 897 845 136 25 19 chr4 41022593 41022751 -114607369 + B2_Mm2 SINE B2 3 161 -34 7 897 201 74 0 0 chr4 41022752 41022779 -114607341 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 897 818 88 160 0 chr4 41022801 41022926 -114607194 + B1_Mus1 SINE Alu 2 146 -2 8 897 551 122 120 9 chr4 41022940 41023048 -114607072 + PB1D9 SINE Alu 1 120 0 8 897 241 113 19 19 chr4 41023048 41023081 -114607039 + A-rich Low_complexity Low_complexity 6 37 0 8 897 1344 65 32 0 chr4 41023081 41023267 -114606853 + B2_Mm1t SINE B2 2 193 0 8 897 241 113 19 19 chr4 41023267 41023287 -114606833 + A-rich Low_complexity Low_complexity 38 58 0 8 897 249 91 0 0 chr4 41023315 41023359 -114606761 + Lx4A LINE L1 7014 7057 -1 8 897 218 191 24 0 chr4 41023389 41023431 -114606689 - L2a LINE L2 -82 3344 3302 8 897 876 144 14 7 chr4 41023800 41023947 -114606173 - B1_Mur4 SINE Alu 0 150 3 8 897 354 23 0 0 chr4 41023983 41024026 -114606094 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 8 897 335 229 59 24 chr4 41024042 41024127 -114605993 - B1_Mus2 SINE Alu -8 139 52 8 897 195 190 68 17 chr4 41024650 41024709 -114605411 + MIRb SINE MIR 204 265 -3 9 897 294 339 59 32 chr4 41024702 41024888 -114605232 - L2b LINE L2 0 3426 3202 9 897 221 281 122 23 chr4 41024998 41025096 -114605024 + B1F2 SINE Alu 21 120 0 9 898 685 61 10 10 chr4 41026433 41026533 -114603587 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 9 898 542 175 123 0 chr4 41026538 41026652 -114603468 - B1_Mus1 SINE Alu -20 128 1 9 898 201 74 0 0 chr4 41026663 41026690 -114603430 + (A)n Simple_repeat Simple_repeat 1 27 0 9 898 225 0 0 0 chr4 41026694 41026719 -114603401 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 9 898 189 0 0 0 chr4 41026767 41026788 -114603332 + (T)n Simple_repeat Simple_repeat 1 21 0 9 898 1019 72 0 41 chr4 41026798 41026943 -114603177 - B1_Mus1 SINE Alu -9 139 1 9 898 405 141 0 0 chr4 41026955 41027026 -114603094 + (A)n Simple_repeat Simple_repeat 1 71 0 9 898 1128 202 5 0 chr4 41027109 41027317 -114602803 - B3 SINE B2 -7 209 1 1 898 691 224 43 27 chr4 41027333 41027517 -114602603 - B3A SINE B2 -10 188 2 1 898 245 29 0 29 chr4 41027682 41027717 -114602403 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 898 840 176 0 0 chr4 41027744 41027892 -114602228 - B1_Mus1 SINE Alu 0 148 1 1 898 303 188 31 0 chr4 41027963 41028027 -114602093 + ID4_ SINE ID 1 66 -17 1 898 397 274 33 5 chr4 41028034 41028194 -114601926 - L1MB7 LINE L1 -47 6136 5971 1 898 1243 80 17 0 chr4 41028237 41028412 -114601708 + B2_Mm1t SINE B2 2 179 -14 1 898 307 38 364 56 chr4 41028463 41028570 -114601550 + B2_Mm2 SINE B2 47 186 -9 1 898 1037 122 81 0 chr4 41028580 41028752 -114601368 + B2_Mm2 SINE B2 2 187 -8 1 898 516 270 77 17 chr4 41028756 41028937 -114601183 - B3A SINE B2 -6 192 1 1 898 504 246 8 30 chr4 41028967 41029101 -114601019 - B3A SINE B2 -9 189 59 1 898 758 48 10 0 chr4 41029129 41029232 -114600888 - B1_Mus2 SINE Alu -2 145 42 1 898 326 147 62 74 chr4 41029170 41029251 -114600869 - RLTR25B LTR ERVK -519 509 430 1 898 735 202 0 0 chr4 41029253 41029923 -114600197 + CT-rich Low_complexity Low_complexity 1 670 0 1 898 382 74 0 0 chr4 41029937 41029991 -114600129 - B1_Mus1 SINE Alu -93 55 2 1 898 294 192 40 27 chr4 41029991 41030003 -114600117 - ID_B1 SINE B4 -79 117 70 1 898 225 275 72 0 chr4 41030066 41030135 -114599985 - B1F1 SINE Alu -51 98 25 1 898 857 286 215 74 chr4 41030209 41030906 -114599214 + RMER13A LTR ERVK 1 795 -65 1 898 832 216 5 36 chr4 41031611 41031803 -114598317 - B3 SINE B2 -5 211 26 1 898 520 153 18 57 chr4 41032132 41032256 -114597864 + B1_Mus2 SINE Alu 1 147 0 1 898 213 211 0 0 chr4 41032384 41032436 -114597684 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 898 523 294 0 0 chr4 41032443 41032569 -114597551 + ID_B1 SINE B4 87 212 -12 1 898 432 295 137 0 chr4 41032671 41032810 -114597310 + RSINE1 SINE B4 8 165 0 1 898 425 168 46 73 chr4 41032829 41032938 -114597182 + MT2B LTR ERVL 152 257 -344 1 898 954 80 7 0 chr4 41032845 41032983 -114597137 + B1_Mus2 SINE Alu 9 147 0 1 898 764 199 14 7 chr4 41033008 41033150 -114596970 + B1_Mur2 SINE Alu 3 145 -4 1 898 327 304 17 17 chr4 41033596 41033713 -114596407 + PB1D10 SINE Alu 1 117 0 1 898 526 240 120 22 chr4 41033815 41033998 -114596122 - B3 SINE B2 -14 202 2 1 898 464 296 63 0 chr4 41034475 41034617 -114595503 + RMER15 LTR ERVL 425 575 0 1 898 223 301 13 52 chr4 41035227 41035304 -114594816 + ID4 SINE ID 6 79 -4 1 898 287 295 10 40 chr4 41035742 41035841 -114594279 - MIR SINE MIR -59 203 108 1 898 228 347 89 0 chr4 41036009 41036133 -114593987 - LTR33 LTR ERVL -333 182 48 1 898 864 189 124 0 chr4 41036639 41036840 -114593280 - URR1A DNA MER1_type 0 226 1 1 898 805 147 59 0 chr4 41037360 41037496 -114592624 + B1_Mur4 SINE Alu 1 144 -6 1 898 610 269 6 12 chr4 41038164 41038326 -114591794 - RSINE1 SINE B4 -1 164 4 1 898 194 222 0 22 chr4 41038371 41038417 -114591703 - MIRc SINE MIR -112 156 112 1 898 279 240 107 29 chr4 41039607 41039710 -114590410 + MT2B2 LTR ERVL 154 264 -320 1 898 469 164 233 0 chr4 41039622 41039738 -114590382 + B1F2 SINE Alu 6 148 -1 1 898 24 32 0 0 chr4 41039897 41039928 -114590192 + AT_rich Low_complexity Low_complexity 1 31 0 1 898 396 0 0 0 chr4 41040302 41040346 -114589774 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 898 183 271 27 54 chr4 41042106 41042180 -114587940 - L2 LINE L2 -3221 198 127 1 898 311 175 9 134 chr4 41043077 41043189 -114586931 + B1_Mur4 SINE Alu 46 143 -7 1 898 262 269 65 28 chr4 41045957 41046064 -114584056 + RSINE1 SINE B4 2 112 -53 1 898 901 90 14 14 chr4 41046104 41046250 -114583870 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 1 898 541 250 22 22 chr4 41046250 41046385 -114583735 - B1_Mur1 SINE Alu -13 136 2 1 898 216 0 0 0 chr4 41046402 41046426 -114583694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 898 1115 75 0 7 chr4 41046426 41046564 -114583556 - B1_Mus2 SINE Alu -9 138 1 1 898 180 0 0 0 chr4 41046564 41046584 -114583536 + (T)n Simple_repeat Simple_repeat 1 20 0 1 898 470 288 9 0 chr4 41046601 41046712 -114583408 + PB1D10 SINE Alu 1 112 -5 1 898 249 170 0 0 chr4 41046891 41046938 -114583182 + PB1D10 SINE Alu 62 108 -9 1 898 426 39 0 0 chr4 41046938 41046990 -114583130 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 1 898 474 236 106 75 chr4 41046991 41047179 -114582941 + B3A SINE B2 4 197 -1 1 898 431 198 136 17 chr4 41047201 41047319 -114582801 + B1_Mur2 SINE Alu 5 136 -13 1 898 405 0 0 0 chr4 41047457 41047502 -114582618 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 1 898 216 0 0 0 chr4 41047585 41047609 -114582511 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1 898 203 184 0 20 chr4 41047609 41047659 -114582461 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 1 898 702 206 7 14 chr4 41047660 41047803 -114582317 - B1F SINE Alu -1 148 7 1 898 315 288 25 0 chr4 41047838 41047918 -114582202 + ID4 SINE ID 2 83 0 1 898 246 254 0 27 chr4 41048162 41048235 -114581885 + ID_B1 SINE B4 99 169 -55 1 898 236 295 56 11 chr4 41048166 41048255 -114581865 + PB1D7 SINE Alu 22 114 -6 1 898 339 215 179 45 chr4 41048261 41048373 -114581747 + RSINE1 SINE B4 20 146 -19 1 898 442 277 40 45 chr4 41048429 41048574 -114581546 + B1F2 SINE Alu 1 141 -7 1 898 450 53 0 0 chr4 41048602 41048659 -114581461 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 898 848 170 0 39 chr4 41049410 41049563 -114580557 - B1_Mus1 SINE Alu -1 147 1 1 898 279 0 0 0 chr4 41049991 41050022 -114580098 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 898 760 229 10 40 chr4 41050531 41050731 -114579389 + B3A SINE B2 1 194 -4 1 898 1306 30 0 12 chr4 41050734 41050893 -114579227 + B2_Mm1t SINE B2 2 160 -33 1 898 278 0 0 106 chr4 41050893 41050940 -114579180 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 898 835 214 99 25 chr4 41050956 41051157 -114578963 + 7SLRNA srpRNA srpRNA 1 216 -98 1 898 1022 125 0 0 chr4 41051208 41051352 -114578768 - B1_Mus2 SINE Alu 0 147 4 1 898 302 174 0 28 chr4 41051374 41051445 -114578675 - B3 SINE B2 0 216 148 1 898 442 227 79 132 chr4 41051467 41051499 -114578621 - B3A SINE B2 -6 192 161 1 898 324 0 0 0 chr4 41051499 41051535 -114578585 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 898 442 227 79 132 chr4 41051535 41051654 -114578466 - B3A SINE B2 -22 176 45 1 898 1292 99 11 0 chr4 41051666 41051857 -114578263 - B2_Mm1t SINE B2 0 193 1 1 898 898 34 17 0 chr4 41051878 41051996 -114578124 + (TTC)n Simple_repeat Simple_repeat 1 120 0 1 898 216 97 0 0 chr4 41052000 41052031 -114578089 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 898 863 121 0 22 chr4 41052055 41052196 -114577924 - B1_Mur3 SINE Alu 0 149 13 1 898 291 194 37 139 chr4 41052103 41052211 -114577909 - MT2B LTR ERVL -344 257 161 1 898 1053 93 68 0 chr4 41052237 41052399 -114577721 + B2_Mm1t SINE B2 7 179 -14 1 898 351 143 0 0 chr4 41052484 41052540 -114577580 + B2_Mm2 SINE B2 46 101 -94 1 898 28 29 0 0 chr4 41052562 41052597 -114577523 + AT_rich Low_complexity Low_complexity 1 35 0 1 898 610 243 0 59 chr4 41052598 41052751 -114577369 + B1_Mur4 SINE Alu 1 144 -6 1 898 794 123 8 0 chr4 41052778 41052908 -114577212 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 1 898 261 0 0 0 chr4 41052909 41052938 -114577182 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 898 225 226 0 0 chr4 41052938 41052991 -114577129 + GA-rich Low_complexity Low_complexity 64 116 0 1 898 299 292 23 158 chr4 41053120 41053142 -114576978 + ID_B1 SINE B4 65 212 -12 1 898 508 232 20 134 chr4 41053142 41053291 -114576829 + B1F2 SINE Alu 6 137 -12 1 898 711 0 0 0 chr4 41053291 41053370 -114576750 + (CAAAA)n Simple_repeat Simple_repeat 3 81 0 1 898 5323 195 68 79 chr4 41056378 41056686 -114573434 + RMER12 LTR ERVK 1 317 -1005 1 898 1416 74 10 26 chr4 41056686 41056879 -114573241 - B2_Mm2 SINE B2 -4 191 2 1 898 5323 195 68 79 chr4 41056879 41056924 -114573196 + RMER12 LTR ERVK 318 320 -1002 1 898 1252 48 0 0 chr4 41056924 41057071 -114573049 - B1_Mus2 SINE Alu 0 147 1 1 898 5323 195 68 79 chr4 41057071 41057462 -114572658 + RMER12 LTR ERVK 321 700 -622 1 898 1175 62 14 0 chr4 41057462 41057607 -114572513 - B1_Mus2 SINE Alu 0 147 1 1 898 5323 195 68 79 chr4 41057607 41057656 -114572464 + RMER12 LTR ERVK 701 736 -586 1 898 189 0 0 0 chr4 41057656 41057677 -114572443 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 1 898 5323 195 68 79 chr4 41057677 41057697 -114572423 + RMER12 LTR ERVK 737 758 -564 1 898 486 0 0 0 chr4 41057697 41057751 -114572369 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 1 898 5323 195 68 79 chr4 41057751 41058269 -114571851 + RMER12 LTR ERVK 759 1320 -2 1 898 1464 65 16 0 chr4 41058622 41058806 -114571314 + B2_Mm2 SINE B2 4 190 -5 1 898 890 142 0 43 chr4 41059776 41059916 -114570204 + B1_Mus2 SINE Alu 9 142 -5 1 898 398 243 74 46 chr4 41060002 41060110 -114570010 + PB1D10 SINE Alu 1 111 -6 1 898 324 282 82 0 chr4 41060157 41060242 -114569878 + RMER12 LTR ERVK 1231 1322 0 1 898 347 255 35 3 chr4 41060512 41060631 -114569489 - B1_Mur2 SINE Alu -19 130 4 1 898 1422 68 15 50 chr4 41060633 41060833 -114569287 - B2_Mm2 SINE B2 -1 194 2 1 898 796 126 12 16 chr4 41060833 41060968 -114569152 - B1_Mus1 SINE Alu -2 146 8 2 898 389 237 219 77 chr4 41060968 41061016 -114569104 - B4 SINE B4 -69 223 15 2 898 395 267 36 43 chr4 41061066 41061081 -114569039 - ID_B1 SINE B4 -62 230 163 2 898 439 244 78 9 chr4 41061081 41061197 -114568923 - B1_Mur1 SINE Alu -19 130 7 2 898 230 247 0 136 chr4 41061130 41061233 -114568887 - MT2B LTR ERVL -374 227 139 2 898 395 267 36 43 chr4 41061197 41061213 -114568907 - ID_B1 SINE B4 -62 162 76 2 898 186 133 0 0 chr4 41063572 41063602 -114566518 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 898 314 234 12 38 chr4 41066636 41066716 -114563404 + ID4_ SINE ID 2 79 -4 2 898 760 191 36 29 chr4 41069537 41069677 -114560443 + ID_B1 SINE B4 84 224 0 2 898 491 294 0 16 chr4 41069704 41069825 -114560295 + PB1D7 SINE Alu 2 120 0 2 898 963 140 88 17 chr4 41069827 41070008 -114560112 + B2_Mm2 SINE B2 2 195 0 2 898 267 265 237 8 chr4 41070009 41070023 -114560097 + ID_B1 SINE B4 80 224 0 2 898 367 200 58 39 chr4 41070023 41070127 -114559993 + PB1D10 SINE Alu 12 117 0 2 898 189 0 0 0 chr4 41070734 41070755 -114559365 + (G)n Simple_repeat Simple_repeat 1 21 0 2 898 861 64 0 0 chr4 41071582 41071707 -114558413 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 898 191 81 54 0 chr4 41071752 41071789 -114558331 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 898 197 281 0 81 chr4 41071808 41071870 -114558250 + L2 LINE L2 2597 2653 -766 2 898 951 67 253 0 chr4 41072176 41072326 -114557794 + B2_Mm1t SINE B2 2 189 -4 2 898 449 237 10 40 chr4 41072346 41072447 -114557673 + RSINE1 SINE B4 68 165 0 2 898 517 253 120 54 chr4 41072508 41072675 -114557445 + B3 SINE B2 5 182 -34 2 898 469 202 91 0 chr4 41072679 41072778 -114557342 - PB1D9 SINE Alu 0 120 13 2 898 845 252 29 34 chr4 41072789 41072994 -114557126 - B3 SINE B2 -7 209 6 2 898 554 288 14 14 chr4 41073043 41073184 -114556936 - B1_Mus2 SINE Alu -3 144 4 2 898 231 36 0 0 chr4 41073217 41073245 -114556875 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 898 759 242 75 30 chr4 41073272 41073472 -114556648 - B3 SINE B2 -6 210 2 2 898 297 0 0 0 chr4 41073491 41073524 -114556596 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2 898 1458 79 5 0 chr4 41073527 41073717 -114556403 + B2_Mm1a SINE B2 1 191 -2 2 898 27 49 0 0 chr4 41073717 41073758 -114556362 + AT_rich Low_complexity Low_complexity 1 41 0 2 898 1185 42 14 0 chr4 41073903 41074046 -114556074 - B1_Mm SINE Alu 0 147 3 2 898 318 187 0 0 chr4 41074379 41074470 -114555650 + CT-rich Low_complexity Low_complexity 2 92 0 2 898 700 240 0 0 chr4 41074485 41074631 -114555489 - B1_Mur1 SINE Alu -3 146 1 2 898 708 114 88 0 chr4 41074841 41074955 -114555165 - B1_Mur4 SINE Alu 0 150 27 2 898 1300 103 0 44 chr4 41074963 41075166 -114554954 - B2_Mm2 SINE B2 0 195 2 2 898 571 279 52 0 chr4 41075186 41075340 -114554780 - B3A SINE B2 -36 162 1 2 898 526 326 7 0 chr4 41075349 41075487 -114554633 - ID_B1 SINE B4 -7 217 79 2 898 709 178 275 12 chr4 41075549 41075720 -114554400 - B3 SINE B2 0 216 1 2 898 1112 71 0 0 chr4 41075796 41075936 -114554184 - B1_Mus1 SINE Alu -8 140 1 2 898 225 270 88 26 chr4 41075967 41076081 -114554039 + MT2B LTR ERVL 156 276 -325 2 898 485 234 105 0 chr4 41075981 41076105 -114554015 + ID_B1 SINE B4 86 222 -2 2 898 1458 50 44 0 chr4 41076139 41076319 -114553801 + B2_Mm1t SINE B2 1 188 -5 2 898 599 229 25 0 chr4 41076340 41076458 -114553662 + ID_B1 SINE B4 96 216 -8 2 898 396 0 0 0 chr4 41077071 41077115 -114553005 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 898 243 0 0 0 chr4 41077115 41077141 -114552979 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 898 294 308 56 28 chr4 41077141 41077248 -114552872 - B1F1 SINE Alu -9 140 31 2 898 394 289 66 8 chr4 41077390 41077512 -114552608 + RSINE1 SINE B4 2 130 -35 2 898 1170 62 0 0 chr4 41077563 41077701 -114552419 + B1_Mus2 SINE Alu 1 138 -9 2 898 207 0 0 0 chr4 41077701 41077724 -114552396 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 898 287 246 82 0 chr4 41078366 41078427 -114551693 - ID_B1 SINE B4 -9 215 150 2 898 413 277 48 41 chr4 41078479 41078626 -114551494 + B1F SINE Alu 1 148 -1 2 898 1101 207 23 72 chr4 41078629 41078936 -114551184 + L1MC3 LINE L1 7136 7427 -358 2 898 327 312 31 20 chr4 41078946 41079044 -114551076 + PB1D10 SINE Alu 7 105 -12 2 898 389 219 122 19 chr4 41079089 41079196 -114550924 + RSINE1 SINE B4 42 159 -6 2 898 839 152 60 8 chr4 41079208 41079341 -114550779 + B1_Mur4 SINE Alu 10 149 -1 2 898 705 254 96 30 chr4 41079940 41079974 -114550146 - B3 SINE B2 0 216 184 2 898 547 200 133 23 chr4 41079974 41080102 -114550018 + B1_Mus1 SINE Alu 1 142 -6 2 898 705 254 96 30 chr4 41080102 41080266 -114549854 - B3 SINE B2 -33 183 5 2 898 775 242 52 27 chr4 41080294 41080485 -114549635 - B3A SINE B2 -14 181 1 2 898 390 303 49 7 chr4 41080618 41080761 -114549359 - RSINE1 SINE B4 -15 150 2 2 898 363 220 121 0 chr4 41080764 41080855 -114549265 - PB1D10 SINE Alu -7 110 9 2 898 221 303 0 15 chr4 41080802 41080869 -114549251 - B4 SINE B4 -146 146 81 2 898 762 135 20 47 chr4 41080886 41081034 -114549086 - B1_Mur3 SINE Alu 0 149 6 2 898 313 263 51 123 chr4 41080893 41081088 -114549032 - B4 SINE B4 -69 223 43 2 898 273 324 0 0 chr4 41081068 41081136 -114548984 - PB1D10 SINE Alu -49 68 1 2 898 293 231 160 8 chr4 41081137 41081268 -114548852 + L1MC3 LINE L1 7626 7776 -9 2 898 200 100 25 0 chr4 41081413 41081453 -114548667 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 2 898 745 181 45 0 chr4 41081456 41081589 -114548531 - B1_Mur2 SINE Alu -1 148 10 2 898 443 228 58 29 chr4 41081702 41081806 -114548314 - B1F2 SINE Alu -6 143 37 2 898 218 105 0 26 chr4 41082412 41082451 -114547669 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 2 898 255 125 0 0 chr4 41082509 41082549 -114547571 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 2 898 203 252 19 46 chr4 41082574 41082682 -114547438 + C-rich Low_complexity Low_complexity 6 110 0 2 898 21 0 0 0 chr4 41082867 41082888 -114547232 + GC_rich Low_complexity Low_complexity 1 21 0 2 898 22 0 0 0 chr4 41082933 41082955 -114547165 + GC_rich Low_complexity Low_complexity 1 22 0 2 898 27 29 0 0 chr4 41083068 41083102 -114547018 + GC_rich Low_complexity Low_complexity 1 34 0 2 898 261 57 0 0 chr4 41084256 41084291 -114545829 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 898 21 0 0 0 chr4 41084837 41084858 -114545262 + AT_rich Low_complexity Low_complexity 1 21 0 2 898 764 126 38 95 chr4 41084977 41085135 -114544985 - B1_Mur3 SINE Alu 0 149 1 2 898 935 139 14 0 chr4 41085319 41085463 -114544657 + B1_Mus1 SINE Alu 1 146 -2 2 898 23 0 0 0 chr4 41085467 41085490 -114544630 + AT_rich Low_complexity Low_complexity 1 23 0 2 898 297 275 0 93 chr4 41085498 41085601 -114544519 + ID4_ SINE ID 4 103 -49 2 898 618 298 50 40 chr4 41085637 41085836 -114544284 + ID_B1 SINE B4 1 201 -23 2 898 488 233 0 70 chr4 41085888 41086017 -114544103 - PB1D9 SINE Alu 0 120 1 2 898 772 213 65 24 chr4 41086155 41086323 -114543797 - B3 SINE B2 -41 175 1 2 898 670 194 0 18 chr4 41086325 41086488 -114543632 + CT-rich Low_complexity Low_complexity 2 161 0 2 898 689 179 73 15 chr4 41086493 41086629 -114543491 - B1_Mus2 SINE Alu -2 145 2 2 898 46 0 0 46 chr4 41086629 41086673 -114543447 + AT_rich Low_complexity Low_complexity 1 44 0 2 898 1214 48 7 0 chr4 41086673 41086818 -114543302 - B1_Mus2 SINE Alu 0 147 2 2 898 46 0 0 46 chr4 41086818 41086838 -114543282 + AT_rich Low_complexity Low_complexity 1 18 0 2 898 339 305 76 8 chr4 41086915 41087047 -114543073 - RSINE1 SINE B4 -23 142 2 2 898 213 215 227 15 chr4 41087055 41087121 -114542999 - ID4 SINE ID 0 83 4 2 898 238 270 33 70 chr4 41087121 41087232 -114542888 + PB1D7 SINE Alu 36 143 -6 2 898 347 254 111 0 chr4 41087235 41087361 -114542759 - B1F SINE Alu -7 142 3 2 898 984 123 20 0 chr4 41087467 41087613 -114542507 - B1_Mur4 SINE Alu 0 150 2 2 898 752 266 28 6 chr4 41087613 41087791 -114542329 - ID_B1 SINE B4 -42 182 1 2 898 462 275 95 53 chr4 41087820 41087989 -114542131 - B3A SINE B2 -15 183 8 2 898 369 204 172 0 chr4 41088020 41088113 -114542007 - PB1D9 SINE Alu -10 110 2 2 898 252 0 0 0 chr4 41088145 41088173 -114541947 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 898 242 167 42 0 chr4 41088182 41088230 -114541890 - B1_Mur4 SINE Alu -1 149 100 2 898 579 214 69 38 chr4 41088266 41088397 -114541723 + B1_Mur1 SINE Alu 14 148 -1 2 898 788 217 44 34 chr4 41088401 41088606 -114541514 - B3 SINE B2 -8 208 2 2 898 1345 62 22 0 chr4 41088616 41088795 -114541325 - B2_Mm2 SINE B2 -6 189 7 2 898 208 250 0 0 chr4 41088835 41088875 -114541245 + polypyrimidine Low_complexity Low_complexity 2 41 0 2 898 995 47 132 0 chr4 41088875 41089004 -114541116 - B1_Mus2 SINE Alu 0 147 2 2 898 315 0 0 0 chr4 41089020 41089055 -114541065 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 898 560 256 189 0 chr4 41089056 41089220 -114540900 - B3 SINE B2 -20 196 2 3 898 477 269 40 33 chr4 41089234 41089384 -114540736 - RSINE1 SINE B4 -11 154 4 3 898 1669 31 0 0 chr4 41089541 41089733 -114540387 - B2_Mm1a SINE B2 0 193 2 3 898 313 217 0 16 chr4 41089796 41089857 -114540263 + RSINE1 SINE B4 2 61 -104 3 898 622 210 36 0 chr4 41090122 41090260 -114539860 - B1_Mus2 SINE Alu -2 145 3 3 898 492 246 22 58 chr4 41090419 41090557 -114539563 - B1_Mur4 SINE Alu -16 134 2 3 898 441 320 39 16 chr4 41091120 41091247 -114538873 + ID_B1 SINE B4 84 213 -11 3 898 306 0 0 0 chr4 41091247 41091281 -114538839 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 3 898 681 234 145 11 chr4 41091304 41091490 -114538630 + B3 SINE B2 4 214 -2 3 898 191 61 0 29 chr4 41091680 41091714 -114538406 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 898 1111 86 0 0 chr4 41091714 41091853 -114538267 - B1_Mus1 SINE Alu -9 139 1 3 898 215 129 0 0 chr4 41091902 41091933 -114538187 - B1_Mus1 SINE Alu -91 57 27 3 898 649 188 120 0 chr4 41091975 41092108 -114538012 - B1_Mur4 SINE Alu -1 149 1 3 898 740 196 128 16 chr4 41092112 41092299 -114537821 - B3 SINE B2 -8 208 1 3 898 298 320 0 0 chr4 41092307 41092385 -114537735 - PB1D10 SINE Alu -39 78 1 3 898 470 297 51 6 chr4 41092578 41092734 -114537386 - RSINE1 SINE B4 0 165 3 3 898 370 200 67 0 chr4 41092742 41092832 -114537288 - B1_Mur4 SINE Alu -54 96 1 3 898 368 194 262 0 chr4 41092886 41092989 -114537131 - B1_Mur4 SINE Alu -8 142 10 3 898 331 115 33 0 chr4 41093005 41093066 -114537054 - B2_Mm1t SINE B2 0 193 131 3 898 350 113 0 0 chr4 41093062 41093115 -114537005 - B2_Mm2 SINE B2 -96 99 47 3 898 1113 126 40 0 chr4 41093180 41093354 -114536766 - B2_Mm2 SINE B2 -14 181 1 3 898 1497 58 26 0 chr4 41093356 41093545 -114536575 - B2_Mm2 SINE B2 0 195 2 3 898 654 160 47 35 chr4 41093561 41093713 -114536407 - B1_Mur3 SINE Alu 0 149 9 3 898 286 188 225 0 chr4 41093729 41093809 -114536311 - ID_B1 SINE B4 -6 218 121 3 898 228 125 100 0 chr4 41093829 41093869 -114536251 - L1M4 LINE L1 -250 5934 5891 3 898 522 256 143 26 chr4 41093898 41094087 -114536033 - RLTR12B LTR ERVK -270 258 48 3 898 23 0 0 0 chr4 41094497 41094520 -114535600 + AT_rich Low_complexity Low_complexity 1 23 0 3 898 921 114 40 1 chr4 41095062 41095248 -114534872 - B2_Mm2 SINE B2 0 193 1 3 898 509 241 177 6 chr4 41095315 41095490 -114534630 - B3 SINE B2 -10 206 2 3 898 286 232 43 14 chr4 41095529 41095599 -114534521 - ID_B1 SINE B4 -64 160 89 3 898 504 207 0 0 chr4 41095732 41095843 -114534277 + (TATATG)n Simple_repeat Simple_repeat 6 116 0 3 898 281 336 81 9 chr4 41095955 41096066 -114534054 + PB1 SINE Alu 1 119 -8 3 898 1165 49 7 14 chr4 41096180 41096326 -114533794 - B1_Mus1 SINE Alu -2 146 2 3 898 239 255 120 93 chr4 41097012 41097120 -114533000 - RSINE1 SINE B4 -23 142 32 3 898 573 177 25 74 chr4 41097113 41097235 -114532885 - B3A SINE B2 -82 116 1 3 898 274 344 51 69 chr4 41097258 41097278 -114532842 - B4 SINE B4 -44 248 140 3 898 608 252 34 20 chr4 41097278 41097424 -114532696 - B1_Mur3 SINE Alu -1 148 1 3 898 23 0 0 0 chr4 41097433 41097456 -114532664 + AT_rich Low_complexity Low_complexity 1 23 0 3 898 279 54 0 0 chr4 41097500 41097537 -114532583 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 898 1456 74 5 5 chr4 41097979 41098169 -114531951 - B2_Mm2 SINE B2 -4 191 2 3 898 712 160 96 30 chr4 41098756 41098891 -114531229 - B1_Mur4 SINE Alu 0 150 7 3 898 382 266 76 41 chr4 41098761 41098906 -114531214 - B4 SINE B4 -71 221 72 3 898 1478 54 27 0 chr4 41099144 41099329 -114530791 - B2_Mm1a SINE B2 -2 191 2 3 898 272 107 410 19 chr4 41099329 41099434 -114530686 - B2_Mm2 SINE B2 -3 192 47 3 898 1261 97 17 0 chr4 41099481 41099656 -114530464 - B2_Mm1t SINE B2 -14 179 2 3 898 292 279 58 64 chr4 41099658 41099830 -114530290 - YREP_Mm Unknown Unknown -1462 350 180 3 898 1066 73 0 0 chr4 41099697 41099834 -114530286 + B1_Mus1 SINE Alu 12 148 0 3 898 330 274 14 0 chr4 41099985 41100058 -114530062 - RSINE1 SINE B4 -4 161 88 3 898 477 300 182 21 chr4 41100148 41100390 -114529730 - B4A SINE B4 0 292 12 3 898 218 229 95 54 chr4 41100425 41100499 -114529621 - ID2 SINE ID -6 77 1 3 898 1356 45 0 0 chr4 41100523 41100747 -114529373 + (TG)n Simple_repeat Simple_repeat 1 224 0 3 898 355 278 33 0 chr4 41100748 41100838 -114529282 - RSINE1 SINE B4 -41 124 32 3 898 503 241 212 0 chr4 41100889 41101059 -114529061 - B3 SINE B2 -10 206 1 3 898 332 190 0 151 chr4 41101117 41101210 -114528910 + MT2B LTR ERVL 173 251 -350 3 898 530 155 41 10 chr4 41101132 41101230 -114528890 + PB1D9 SINE Alu 20 120 0 3 898 235 267 173 29 chr4 41101299 41101403 -114528717 - PB1D9 SINE Alu -1 119 1 3 898 806 169 52 0 chr4 41101428 41101564 -114528556 - B1_Mur4 SINE Alu -5 145 3 3 898 658 195 62 0 chr4 41101777 41101890 -114528230 - B3A SINE B2 -78 120 1 3 898 559 160 19 39 chr4 41101915 41102019 -114528101 - B1_Mus1 SINE Alu -46 102 1 3 898 282 333 29 39 chr4 41102105 41102208 -114527912 + RSINE1 SINE B4 2 103 -62 3 898 520 257 207 10 chr4 41102345 41102538 -114527582 + Cheshire DNA MER1_type 110 340 -2080 3 898 504 221 45 22 chr4 41102507 41102641 -114527479 + B1F1 SINE Alu 13 149 0 3 898 234 0 0 0 chr4 41102765 41102791 -114527329 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 898 1249 47 0 0 chr4 41102806 41102954 -114527166 - B1_Mus1 SINE Alu 0 148 1 3 898 567 308 60 43 chr4 41102973 41103207 -114526913 + Cheshire DNA MER1_type 827 1064 -1356 3 898 1143 109 0 0 chr4 41103577 41103733 -114526387 + B2_Mm2 SINE B2 2 157 -38 3 898 495 0 0 0 chr4 41103733 41103788 -114526332 + (TAA)n Simple_repeat Simple_repeat 3 57 0 3 898 425 92 439 0 chr4 41103845 41103943 -114526177 + B2_Mm2 SINE B2 47 187 -8 3 898 481 227 117 0 chr4 41104065 41104193 -114525927 + B1_Mur2 SINE Alu 5 147 -2 3 898 1018 70 0 78 chr4 41104294 41104448 -114525672 + B1_Mus2 SINE Alu 1 142 -5 3 898 310 319 100 6 chr4 41104652 41104822 -114525298 + MIR SINE MIR 71 256 -6 3 898 1004 235 97 48 chr4 41104891 41105159 -114524961 - B4A SINE B4 -6 286 6 3 898 217 190 79 79 chr4 41105527 41105590 -114524530 - ID4 SINE ID -8 75 13 3 898 1111 43 0 0 chr4 41105783 41105922 -114524198 - B1_Mus1 SINE Alu 0 148 10 3 898 22 0 0 0 chr4 41106603 41106625 -114523495 + AT_rich Low_complexity Low_complexity 1 22 0 3 898 972 128 0 7 chr4 41106666 41106808 -114523312 + B1_Mur4 SINE Alu 10 150 0 3 898 361 271 41 20 chr4 41106965 41107063 -114523057 + PB1D7 SINE Alu 2 101 -19 3 898 1364 80 0 6 chr4 41107156 41107333 -114522787 - B2_Mm2 SINE B2 -17 178 3 3 898 334 320 50 0 chr4 41107644 41107744 -114522376 - PB1D7 SINE Alu -6 114 10 3 898 420 237 52 17 chr4 41107782 41107898 -114522222 - B1F1 SINE Alu -7 142 23 3 898 831 221 54 29 chr4 41107952 41108157 -114521963 - B3 SINE B2 -6 210 1 3 898 246 200 171 34 chr4 41108185 41108273 -114521847 - PB1 SINE Alu -4 123 24 3 898 1590 232 42 69 chr4 41108347 41108866 -114521254 - RLTR16 LTR ERVK 0 505 1 3 898 186 71 0 0 chr4 41108891 41108919 -114521201 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 3 898 4098 188 185 134 chr4 41108943 41109752 -114520368 - MYSERV16_I-int LTR ERVK -59 2267 1290 3 898 1237 97 17 0 chr4 41109752 41109765 -114520355 - B2_Mm1a SINE B2 -15 178 164 3 898 192 77 0 0 chr4 41109765 41109791 -114520329 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3 898 1237 97 17 0 chr4 41109791 41109952 -114520168 - B2_Mm1a SINE B2 -30 163 2 3 898 4098 188 185 134 chr4 41109952 41110357 -114519763 - MYSERV16_I-int LTR ERVK -1037 1289 790 3 898 1641 42 0 0 chr4 41110357 41110548 -114519572 + B2_Mm1a SINE B2 2 192 -1 3 898 4098 188 185 134 chr4 41110548 41111048 -114519072 - MYSERV16_I-int LTR ERVK -1537 789 282 3 898 867 241 24 64 chr4 41111062 41111359 -114518761 - RMER3D-int LTR ERVK -1464 1378 1094 3 898 1210 55 0 0 chr4 41111524 41111669 -114518451 - B1_Mus2 SINE Alu 0 147 3 3 898 354 260 43 88 chr4 41111932 41112179 -114517941 - RMER3D-int LTR ERVK -2163 679 557 3 898 1192 220 219 17 chr4 41112374 41112467 -114517653 - RLTR16 LTR ERVK 0 505 415 3 898 390 21 0 0 chr4 41112467 41112514 -114517606 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 898 1192 220 219 17 chr4 41112514 41112840 -114517280 - RLTR16 LTR ERVK -91 414 2 3 898 215 326 58 0 chr4 41112940 41113026 -114517094 - PB1D10 SINE Alu -13 104 14 3 898 24 32 0 0 chr4 41113059 41113090 -114517030 + AT_rich Low_complexity Low_complexity 1 31 0 3 898 841 208 18 58 chr4 41113583 41113808 -114516312 + B3 SINE B2 1 216 0 3 898 266 323 0 0 chr4 41113833 41113898 -114516222 + ID4_ SINE ID 5 69 -14 3 898 1210 41 0 14 chr4 41113951 41114099 -114516021 + B1_Mm SINE Alu 2 147 0 3 898 357 24 0 0 chr4 41114161 41114203 -114515917 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 898 248 345 0 103 chr4 41114335 41114432 -114515688 + ID_B1 SINE B4 91 177 -47 3 898 1231 59 77 0 chr4 41114470 41114640 -114515480 + B2_Mm2 SINE B2 13 195 0 3 898 680 263 22 15 chr4 41114638 41114807 -114515313 + B3 SINE B2 27 189 -6 4 898 261 0 0 0 chr4 41114848 41114877 -114515243 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 898 333 232 122 0 chr4 41114938 41115020 -114515100 - B3 SINE B2 -7 209 118 4 898 1005 62 0 0 chr4 41115040 41115168 -114514952 - B1_Mus1 SINE Alu -2 146 19 4 898 399 242 65 11 chr4 41115174 41115266 -114514854 - B3A SINE B2 -81 117 21 4 898 240 152 20 80 chr4 41115275 41115325 -114514795 - ID_B1 SINE B4 0 224 178 4 898 412 154 230 26 chr4 41115354 41115467 -114514653 + B1_Mur4 SINE Alu 2 137 -13 4 898 207 0 0 0 chr4 41115469 41115492 -114514628 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 898 660 178 107 15 chr4 41116847 41116978 -114513142 - B1_Mus1 SINE Alu 0 148 6 4 898 411 282 48 16 chr4 41117151 41117277 -114512843 - B1F SINE Alu -16 133 4 4 898 244 228 121 48 chr4 41117411 41117494 -114512626 + PB1D9 SINE Alu 32 120 0 4 898 296 341 104 0 chr4 41117559 41117694 -114512426 - RSINE1 SINE B4 0 165 17 4 898 631 219 31 0 chr4 41117728 41117856 -114512264 + B3 SINE B2 1 132 -84 4 898 342 263 20 31 chr4 41117857 41117955 -114512165 + PB1D9 SINE Alu 23 119 -1 4 898 288 103 100 33 chr4 41118042 41118102 -114512018 - B2_Mm2 SINE B2 -19 176 113 4 898 323 300 132 44 chr4 41118109 41118245 -114511875 - RSINE1 SINE B4 -6 159 12 4 898 228 203 62 15 chr4 41118260 41118325 -114511795 - L1M4 LINE L1 -5573 969 902 4 898 25 31 0 0 chr4 41118683 41118715 -114511405 + AT_rich Low_complexity Low_complexity 1 32 0 4 898 323 272 26 26 chr4 41118824 41118941 -114511179 - PB1D10 SINE Alu 0 117 1 4 898 812 163 87 38 chr4 41119046 41119231 -114510889 - B2_Mm2 SINE B2 0 195 2 4 898 931 224 28 32 chr4 41119233 41119450 -114510670 - B3 SINE B2 0 216 1 4 898 22 0 0 0 chr4 41119458 41119480 -114510640 + AT_rich Low_complexity Low_complexity 1 22 0 4 898 438 240 39 20 chr4 41119589 41119691 -114510429 + PB1D10 SINE Alu 9 112 -5 4 898 332 255 48 10 chr4 41119774 41119877 -114510243 - U6 snRNA snRNA 0 107 1 4 898 456 313 9 9 chr4 41119883 41119999 -114510121 - ID_B1 SINE B4 -17 207 92 4 898 823 234 45 5 chr4 41120347 41120549 -114509571 + B3 SINE B2 4 213 -3 4 898 215 194 0 0 chr4 41121241 41121277 -114508843 + ID2 SINE ID 47 82 -1 4 898 282 254 16 16 chr4 41121287 41121351 -114508769 + ID4 SINE ID 2 65 -18 4 898 366 200 205 62 chr4 41122128 41122240 -114507880 + RSINE1 SINE B4 17 144 -21 4 898 387 231 148 0 chr4 41122288 41122396 -114507724 + B1_Mm SINE Alu 7 130 -17 4 898 22 56 0 0 chr4 41122442 41122478 -114507642 + AT_rich Low_complexity Low_complexity 1 36 0 4 898 369 333 68 112 chr4 41122518 41122724 -114507396 + B3A SINE B2 2 198 0 4 898 579 106 0 0 chr4 41122785 41122870 -114507250 + B2_Mm2 SINE B2 1 85 -110 4 898 1163 109 48 21 chr4 41122886 41123074 -114507046 + B2_Mm2 SINE B2 2 194 -1 4 898 521 242 10 0 chr4 41123117 41123216 -114506904 + B1_Mur2 SINE Alu 1 100 -49 4 898 26 74 0 0 chr4 41123922 41123976 -114506144 + AT_rich Low_complexity Low_complexity 1 54 0 4 898 1433 81 5 0 chr4 41124028 41124213 -114505907 + B2_Mm1a SINE B2 2 187 -6 4 898 1645 42 0 0 chr4 41124227 41124419 -114505701 - B2_Mm1a SINE B2 -1 192 1 4 898 903 243 24 14 chr4 41124476 41124685 -114505435 + B3 SINE B2 1 211 -5 4 898 334 179 42 56 chr4 41124820 41124891 -114505229 - B3 SINE B2 -138 78 9 4 898 801 223 86 0 chr4 41124969 41125166 -114504954 - MTD LTR MaLR -123 296 83 4 898 270 228 0 66 chr4 41125300 41125361 -114504759 + B1_Mm SINE Alu 36 92 -55 4 898 220 224 86 0 chr4 41125438 41125496 -114504624 + PB1 SINE Alu 36 98 -29 4 898 518 241 17 17 chr4 41126228 41126346 -114503774 + B1_Mur1 SINE Alu 1 118 -31 4 898 288 326 100 52 chr4 41126334 41126564 -114503556 + RLTR25B LTR ERVK 262 502 -526 4 898 598 120 9 74 chr4 41126502 41126610 -114503510 + B1_Mus2 SINE Alu 42 142 -5 4 898 570 302 151 20 chr4 41126936 41127240 -114502880 - Lx8 LINE L1 -240 7233 6890 4 898 1287 168 105 15 chr4 41127359 41127625 -114502495 + MTC LTR MaLR 130 419 -2 4 898 1165 68 14 0 chr4 41127642 41127790 -114502330 - B1_Mur4 SINE Alu 0 150 1 4 898 1387 81 0 21 chr4 41127812 41128001 -114502119 - B2_Mm2 SINE B2 -9 186 2 4 898 21 36 0 0 chr4 41128013 41128041 -114502079 + AT_rich Low_complexity Low_complexity 1 28 0 4 898 1401 73 5 20 chr4 41128099 41128294 -114501826 + B2_Mm1t SINE B2 2 193 0 4 898 569 261 147 64 chr4 41128326 41128592 -114501528 + B4A SINE B4 5 292 0 4 898 721 170 0 140 chr4 41128606 41128777 -114501343 - B1_Mus1 SINE Alu 0 148 2 4 898 420 208 0 0 chr4 41128832 41128928 -114501192 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 898 900 141 0 39 chr4 41128978 41129133 -114500987 + B1_Mur4 SINE Alu 2 150 0 4 898 246 258 181 53 chr4 41129444 41129538 -114500582 - B1F2 SINE Alu -41 108 3 4 898 1253 41 0 0 chr4 41129604 41129750 -114500370 - B1_Mus2 SINE Alu 0 147 2 4 898 29 60 0 0 chr4 41129756 41129806 -114500314 + AT_rich Low_complexity Low_complexity 1 50 0 4 898 546 259 71 7 chr4 41129841 41129981 -114500139 - B1_Mur1 SINE Alu 0 149 1 4 898 561 126 0 0 chr4 41129985 41130096 -114500024 + (TG)n Simple_repeat Simple_repeat 1 111 0 4 898 345 311 29 0 chr4 41130119 41130222 -114499898 - PB1D10 SINE Alu -5 112 7 4 898 906 154 0 26 chr4 41130449 41130602 -114499518 - B1_Mur4 SINE Alu -1 149 1 4 898 422 282 107 102 chr4 41130602 41130651 -114499469 - B4A SINE B4 -219 73 24 4 898 333 294 12 12 chr4 41130596 41130682 -114499438 - PB1 SINE Alu -21 106 21 4 898 216 0 0 0 chr4 41131205 41131229 -114498891 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 898 266 320 102 10 chr4 41131232 41131330 -114498790 - RSINE1 SINE B4 -57 108 2 4 898 445 195 0 0 chr4 41131408 41131485 -114498635 + B1_Mur3 SINE Alu 7 83 -66 4 898 313 301 33 58 chr4 41131481 41131601 -114498519 - B1_Mus1 SINE Alu -5 143 27 4 898 827 67 0 0 chr4 41132014 41132119 -114498001 + B2_Mm2 SINE B2 3 107 -88 4 898 188 163 0 23 chr4 41132297 41132341 -114497779 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 4 898 467 231 48 9 chr4 41132344 41132449 -114497671 - B1_Mur1 SINE Alu -1 148 40 4 898 473 234 48 96 chr4 41132609 41132817 -114497303 - B3A SINE B2 0 198 1 4 898 435 154 15 142 chr4 41132838 41133042 -114497078 + RMER17C LTR ERVK 98 275 -135 4 898 30 45 0 0 chr4 41133042 41133086 -114497034 + AT_rich Low_complexity Low_complexity 1 44 0 4 898 825 269 106 4 chr4 41133118 41133364 -114496756 - Lx6 LINE L1 -149 7311 7041 4 898 626 238 31 23 chr4 41133364 41133493 -114496627 + B1_Mur2 SINE Alu 1 130 -19 4 898 353 164 0 18 chr4 41133486 41133542 -114496578 - B1_Mur2 SINE Alu -11 138 84 4 898 1383 265 170 0 chr4 41133550 41133996 -114496124 - Lx6 LINE L1 -421 7039 6518 4 898 4220 170 121 44 chr4 41133991 41135089 -114495031 - Lx6 LINE L1 -1180 6280 5100 4 898 970 89 82 0 chr4 41135089 41135224 -114494896 - B1_Mus2 SINE Alu -1 146 1 4 898 4220 163 131 46 chr4 41135224 41135419 -114494701 - Lx6 LINE L1 -778 5099 4873 4 898 22 0 0 0 chr4 41135690 41135712 -114494408 + AT_rich Low_complexity Low_complexity 1 22 0 4 898 871 109 150 0 chr4 41135721 41135868 -114494252 + B2_Mm2 SINE B2 1 169 -26 4 898 312 312 155 7 chr4 41135890 41136032 -114494088 - RSINE1 SINE B4 0 165 3 4 898 531 0 0 0 chr4 41136525 41136584 -114493536 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 898 341 241 72 0 chr4 41136605 41136688 -114493432 - B1_Mur3 SINE Alu -60 89 1 4 898 202 210 115 69 chr4 41136789 41136876 -114493244 + L3 LINE CR1 905 995 -3494 4 898 216 301 40 14 chr4 41137518 41137592 -114492528 + B1F SINE Alu 3 78 -71 4 898 250 246 0 0 chr4 41137771 41137836 -114492284 + (ATG)n Simple_repeat Simple_repeat 2 66 0 4 898 312 298 102 41 chr4 41138268 41138415 -114491705 + L1M4c LINE L1 2220 2375 -4009 4 898 320 274 61 5 chr4 41144757 41144940 -114485180 + B3 SINE B2 1 216 0 4 898 1067 83 20 10 chr4 41145699 41145854 -114484266 - B1_Mm SINE Alu 0 311 11 4 898 557 245 86 69 chr4 41145717 41145892 -114484228 - B4 SINE B4 -67 225 48 4 898 405 208 96 102 chr4 41145743 41145909 -114484211 - MT2B2 LTR ERVL -306 278 114 4 898 277 319 139 0 chr4 41145858 41145930 -114484190 - PB1D10 SINE Alu -35 82 1 4 898 1224 61 0 0 chr4 41147305 41147452 -114482668 + B1_Mus1 SINE Alu 2 148 0 4 898 440 244 86 70 chr4 41147512 41147640 -114482480 + B3A SINE B2 1 130 -68 4 898 305 306 39 39 chr4 41147611 41147740 -114482380 + B3A SINE B2 66 194 -4 4 898 703 267 29 24 chr4 41147741 41147948 -114482172 + B3 SINE B2 1 208 -8 4 898 550 248 43 7 chr4 41150293 41150431 -114479689 + B1_Mur1 SINE Alu 6 148 -1 4 898 259 297 133 18 chr4 41150739 41150852 -114479268 - B3A SINE B2 -5 193 68 4 898 21 36 0 0 chr4 41151142 41151170 -114478950 + AT_rich Low_complexity Low_complexity 1 28 0 4 898 514 241 111 0 chr4 41151482 41151590 -114478530 + B3 SINE B2 7 126 -90 4 898 728 298 161 37 chr4 41151778 41152214 -114477906 + Lx8 LINE L1 6198 6687 -786 5 898 490 260 78 26 chr4 41152287 41152441 -114477679 + RSINE1 SINE B4 3 164 -1 5 898 254 289 67 0 chr4 41152909 41152999 -114477121 + L1MB7 LINE L1 5842 5937 -247 5 898 198 0 0 0 chr4 41154257 41154279 -114475841 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 898 245 258 57 57 chr4 41154401 41154471 -114475649 - B4A SINE B4 -13 279 210 5 898 320 300 54 9 chr4 41154857 41154968 -114475152 + PB1D10 SINE Alu 1 116 -1 5 898 572 241 28 35 chr4 41155182 41155324 -114474796 + MER68 LTR ERVL 124 264 -299 5 898 353 22 22 0 chr4 41155508 41155554 -114474566 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 898 480 162 0 0 chr4 41155622 41155696 -114474424 + B1_Mur4 SINE Alu 20 93 -57 5 898 473 320 77 10 chr4 41155699 41155895 -114474225 - B3 SINE B2 -7 209 1 5 898 561 221 65 15 chr4 41155921 41156068 -114474052 - B1F2 SINE Alu 0 149 1 5 898 524 267 19 0 chr4 41156077 41156182 -114473938 - PB1D7 SINE Alu -7 113 7 5 899 751 185 7 29 chr4 41157222 41157361 -114472759 - B1_Mur3 SINE Alu -13 136 1 5 899 26 50 0 0 chr4 41157741 41157781 -114472339 + AT_rich Low_complexity Low_complexity 1 40 0 5 899 221 286 58 35 chr4 41158338 41158425 -114471695 + RSINE1 SINE B4 77 165 0 5 899 192 289 103 46 chr4 41158524 41158611 -114471509 + L4 LINE RTE 1791 1882 -147 5 899 294 299 86 8 chr4 41159246 41159374 -114470746 - B1F1 SINE Alu 0 149 12 5 899 1000 23 102 36 chr4 41159989 41160126 -114469994 - B1_Mus1 SINE Alu 0 148 3 5 899 317 206 95 78 chr4 41160329 41160445 -114469675 + PB1D9 SINE Alu 1 118 -2 5 899 281 122 0 75 chr4 41160464 41160517 -114469603 + B1_Mm SINE Alu 87 135 -12 5 899 315 0 0 0 chr4 41160519 41160554 -114469566 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 5 899 381 232 161 110 chr4 41160565 41160720 -114469400 + RSINE1 SINE B4 3 165 0 5 899 213 241 68 17 chr4 41160797 41160856 -114469264 + L4 LINE RTE 1791 1852 -177 5 899 667 217 35 7 chr4 41161005 41161149 -114468971 + B1_Mur2 SINE Alu 1 148 -1 5 899 717 259 40 10 chr4 41161319 41161518 -114468602 - B3 SINE B2 -10 206 2 5 899 1741 16 0 0 chr4 41161535 41161727 -114468393 - B2_Mm1a SINE B2 0 193 2 5 899 406 267 294 31 chr4 41162345 41162525 -114467595 + B4 SINE B4 11 239 -53 5 899 532 306 23 64 chr4 41162525 41162696 -114467424 + RSINE1 SINE B4 2 165 0 5 899 750 150 71 0 chr4 41162995 41163135 -114466985 - B1_Mur4 SINE Alu 0 150 1 5 899 746 272 193 26 chr4 41164062 41164477 -114465643 - RCHARR1 DNA MER1_type -215 759 276 5 899 316 265 28 75 chr4 41164659 41164765 -114465355 + B3 SINE B2 58 158 -58 5 899 1084 164 25 0 chr4 41164744 41164945 -114465175 + ORR1A1-int LTR MaLR 406 611 -1181 5 899 301 203 130 0 chr4 41164893 41164962 -114465158 + MT2B LTR ERVL 157 234 -367 5 899 496 186 161 0 chr4 41164983 41165107 -114465013 + B1_Mm SINE Alu 3 146 -1 5 899 1218 55 0 0 chr4 41165647 41165793 -114464327 + B1_Mus2 SINE Alu 2 147 0 5 899 199 0 53 105 chr4 41165793 41165850 -114464270 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 5 899 529 224 108 31 chr4 41165916 41166045 -114464075 + B1_Mur2 SINE Alu 10 148 -1 5 899 217 364 0 0 chr4 41166141 41166196 -114463924 + B4A SINE B4 2 56 -236 5 899 763 184 7 52 chr4 41166196 41166351 -114463769 + B1_Mur4 SINE Alu 3 150 0 5 899 228 220 0 106 chr4 41166416 41166482 -114463638 + B3A SINE B2 2 60 -138 5 899 332 216 27 13 chr4 41166546 41166621 -114463499 + B4A SINE B4 182 257 -35 5 899 410 281 62 6 chr4 41166653 41166814 -114463306 + B4 SINE B4 56 225 -67 5 899 2264 126 21 33 chr4 41167550 41167977 -114462143 + RLTR11B LTR ERVK 1 422 -31 5 899 249 33 0 0 chr4 41167989 41168019 -114462101 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 899 418 192 152 0 chr4 41168080 41168179 -114461941 - B1_Mur2 SINE Alu -2 147 34 5 899 254 214 0 0 chr4 41169352 41169394 -114460726 - B1F SINE Alu -107 42 1 5 899 1280 86 40 0 chr4 41169493 41169667 -114460453 + B2_Mm2 SINE B2 1 181 -14 5 899 341 100 313 26 chr4 41169710 41169825 -114460295 + B2_Mm2 SINE B2 47 194 -1 5 899 310 292 56 9 chr4 41169834 41169941 -114460179 - PB1D7 SINE Alu -6 114 3 5 899 510 361 10 30 chr4 41169968 41170165 -114459955 + B3A SINE B2 1 193 -5 5 899 292 311 22 0 chr4 41170237 41170327 -114459793 + PB1D7 SINE Alu 22 113 -7 5 899 370 217 87 0 chr4 41170579 41170671 -114459449 + B1_Mur2 SINE Alu 50 149 0 5 899 527 213 21 29 chr4 41170847 41170987 -114459133 - B1_Mur4 SINE Alu 0 150 12 5 899 527 188 20 0 chr4 41171142 41171243 -114458877 - PB1D9 SINE Alu 0 120 18 5 899 284 244 49 49 chr4 41171257 41171338 -114458782 - ID_B1 SINE B4 -6 218 138 5 899 1266 172 179 19 chr4 41171338 41171663 -114458457 + RLTR14 LTR ERV1 1 377 -5 5 899 343 280 80 0 chr4 41171674 41171774 -114458346 - ID_B1 SINE B4 -114 110 3 5 899 493 247 97 51 chr4 41171937 41172133 -114457987 + B3 SINE B2 2 206 -10 5 899 433 257 36 27 chr4 41172206 41172318 -114457802 - B1_Mus2 SINE Alu -29 118 6 5 899 837 219 25 46 chr4 41172348 41172544 -114457576 - B3 SINE B2 -24 192 1 5 899 448 229 47 9 chr4 41173555 41173661 -114456459 + B3 SINE B2 100 209 -7 5 899 661 153 92 0 chr4 41173683 41173814 -114456306 + B1_Mus1 SINE Alu 6 148 0 5 899 242 333 0 0 chr4 41173879 41173939 -114456181 - PB1D10 SINE Alu -57 60 1 5 899 253 97 182 61 chr4 41174438 41174504 -114455616 + B1_Mur2 SINE Alu 68 141 -8 5 899 217 299 0 65 chr4 41174618 41174711 -114455409 + PB1D10 SINE Alu 31 117 0 5 899 612 89 97 0 chr4 41174718 41174842 -114455278 + RMER17B LTR ERVK 316 451 -507 5 899 195 42 0 0 chr4 41174842 41174866 -114455254 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 5 899 236 206 85 85 chr4 41174922 41174938 -114455182 + MT2B LTR ERVL 152 167 -434 5 899 451 172 131 0 chr4 41174938 41175037 -114455083 + B1_Mur3 SINE Alu 2 113 -36 5 899 557 214 8 8 chr4 41175466 41175584 -114454536 + PB1D9 SINE Alu 3 120 0 5 899 527 250 100 0 chr4 41175738 41175878 -114454242 + RSINE1 SINE B4 3 156 -9 5 899 354 344 0 0 chr4 41176036 41176132 -114453988 - PB1D10 SINE Alu -7 110 15 5 899 23 0 0 0 chr4 41176293 41176316 -114453804 + AT_rich Low_complexity Low_complexity 1 23 0 5 899 476 165 22 11 chr4 41176340 41176432 -114453688 - B1_Mur1 SINE Alu -14 135 43 5 899 476 187 0 0 chr4 41176955 41177046 -114453074 + RMER13A LTR ERVK 1 91 -769 5 899 776 224 72 38 chr4 41177402 41177611 -114452509 + B3 SINE B2 1 216 0 5 899 36 0 0 0 chr4 41177619 41177655 -114452465 + AT_rich Low_complexity Low_complexity 1 36 0 5 899 447 254 149 0 chr4 41177655 41177769 -114452351 + B1F SINE Alu 6 136 -13 5 899 594 255 143 0 chr4 41177812 41177973 -114452147 - B3 SINE B2 -31 185 2 5 899 676 192 0 82 chr4 41178133 41178292 -114451828 + B1_Mm SINE Alu 2 147 0 5 899 342 0 0 0 chr4 41178292 41178330 -114451790 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 899 814 208 40 25 chr4 41178330 41178532 -114451588 + B3 SINE B2 8 212 -4 5 899 830 242 5 36 chr4 41178564 41178757 -114451363 + B3 SINE B2 2 188 -28 5 899 1251 97 11 6 chr4 41178767 41178944 -114451176 + B2_Mm1t SINE B2 2 179 -14 5 899 301 108 313 52 chr4 41178990 41179105 -114451015 + B2_Mm2 SINE B2 47 191 -4 5 899 1142 75 0 14 chr4 41179154 41179302 -114450818 + B1_Mus2 SINE Alu 1 146 -1 5 899 21 0 0 0 chr4 41179317 41179338 -114450782 + AT_rich Low_complexity Low_complexity 1 21 0 5 899 372 119 0 0 chr4 41179382 41179441 -114450679 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 899 415 282 9 0 chr4 41179450 41179560 -114450560 - B3A SINE B2 -87 111 1 5 899 245 158 0 0 chr4 41179877 41179915 -114450205 + B3A SINE B2 2 39 -159 5 899 598 283 31 37 chr4 41180000 41180191 -114449929 + B3 SINE B2 27 216 0 5 899 315 202 234 0 chr4 41180226 41180320 -114449800 + ID_B1 SINE B4 2 117 -107 5 899 339 289 7 75 chr4 41180935 41181081 -114449039 - B1_Mur1 SINE Alu -13 136 1 5 899 740 293 29 0 chr4 41182081 41182289 -114447831 + B3 SINE B2 1 214 -2 5 899 932 164 215 0 chr4 41182306 41182483 -114447637 - B3 SINE B2 -1 215 1 5 899 291 292 98 16 chr4 41182741 41182863 -114447257 + ID_B1 SINE B4 82 213 -11 5 899 1545 47 5 10 chr4 41182938 41183130 -114446990 + B2_Mm1a SINE B2 2 192 -1 5 899 316 222 16 0 chr4 41183661 41183724 -114446396 - ID4_ SINE ID -2 81 18 5 899 333 257 86 105 chr4 41183763 41183798 -114446322 - B1F1 SINE Alu 0 149 119 5 899 390 276 35 50 chr4 41183798 41183939 -114446181 + B1_Mur3 SINE Alu 4 142 -7 5 899 333 257 86 105 chr4 41183939 41184055 -114446065 - B1F1 SINE Alu -31 118 1 5 899 377 274 26 26 chr4 41184068 41184184 -114445936 - PB1D10 SINE Alu -1 116 1 5 899 457 268 44 25 chr4 41184407 41184610 -114445510 - B4A SINE B4 -85 207 1 5 899 31 26 0 0 chr4 41184797 41184835 -114445285 + AT_rich Low_complexity Low_complexity 1 38 0 5 899 349 307 34 0 chr4 41184872 41184960 -114445160 - RSINE1 SINE B4 -72 93 3 6 899 657 231 14 7 chr4 41184977 41185125 -114444995 - B1_Mur1 SINE Alu 0 149 1 6 899 569 282 109 0 chr4 41185262 41185464 -114444656 - ID_B1 SINE B4 0 224 1 6 899 309 68 0 0 chr4 41186226 41186270 -114443850 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 6 899 822 236 26 20 chr4 41186285 41186480 -114443640 + B3 SINE B2 19 214 -2 6 899 251 305 95 109 chr4 41186486 41186510 -114443610 + B4 SINE B4 70 214 -78 6 899 534 204 54 36 chr4 41186510 41186633 -114443487 + B1_Mur1 SINE Alu 13 137 -12 6 899 240 308 104 37 chr4 41186646 41186781 -114443339 + RSINE1 SINE B4 3 146 -19 6 899 432 0 0 0 chr4 41186790 41186838 -114443282 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 899 240 59 0 0 chr4 41186874 41186908 -114443212 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 899 228 244 72 12 chr4 41186949 41187032 -114443088 + PB1D10 SINE Alu 30 117 0 6 899 355 275 77 35 chr4 41187036 41187179 -114442941 + L1MC LINE L1 3031 3179 -2967 6 899 302 311 66 36 chr4 41187195 41187332 -114442788 + B1F SINE Alu 1 141 -8 6 899 337 152 0 15 chr4 41187353 41187420 -114442700 + B1_Mur3 SINE Alu 79 144 -5 6 899 214 294 15 0 chr4 41187496 41187564 -114442556 - ID4_ SINE ID -1 82 14 6 899 224 265 60 0 chr4 41187720 41187803 -114442317 + PB1D10 SINE Alu 28 115 -2 6 899 395 231 87 0 chr4 41188307 41188411 -114441709 + B1F SINE Alu 1 113 -36 6 899 189 74 0 0 chr4 41188480 41188507 -114441613 + (T)n Simple_repeat Simple_repeat 1 27 0 6 899 1120 96 0 0 chr4 41188507 41188653 -114441467 - B1_Mus2 SINE Alu 0 147 2 6 899 660 111 0 0 chr4 41188654 41188753 -114441367 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 6 899 246 143 0 0 chr4 41188753 41188802 -114441318 + (CGGA)n Simple_repeat Simple_repeat 1 49 0 6 899 279 0 0 0 chr4 41188803 41188834 -114441286 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 6 899 335 301 39 73 chr4 41188944 41189020 -114441100 + L1M4 LINE L1 3858 3930 -2216 6 899 708 170 65 29 chr4 41189020 41189159 -114440961 - B1_Mus1 SINE Alu -2 146 3 6 899 335 301 39 73 chr4 41189159 41189315 -114440805 + L1M4 LINE L1 3931 4082 -2064 6 899 380 231 179 0 chr4 41189316 41189433 -114440687 + B1_Mus2 SINE Alu 10 147 0 6 899 1151 42 0 20 chr4 41189438 41189573 -114440547 + B1_Mus1 SINE Alu 5 139 -9 6 899 207 0 0 0 chr4 41189573 41189596 -114440524 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 899 1151 42 0 20 chr4 41189596 41189607 -114440513 + B1_Mus1 SINE Alu 140 148 0 6 899 436 358 12 0 chr4 41189866 41190028 -114440092 - RSINE1 SINE B4 0 165 2 6 899 215 94 0 0 chr4 41190195 41190227 -114439893 + B4A SINE B4 2 33 -259 6 899 572 257 19 44 chr4 41190574 41190733 -114439387 + ID_B1 SINE B4 49 203 -21 6 899 596 269 17 126 chr4 41190796 41190837 -114439283 + B3 SINE B2 1 41 -175 6 899 1238 113 49 0 chr4 41190837 41191022 -114439098 + B2_Mm2 SINE B2 2 195 0 6 899 596 269 17 126 chr4 41191022 41191210 -114438910 + B3 SINE B2 42 205 -11 6 899 497 224 0 45 chr4 41191226 41191338 -114438782 + B3A SINE B2 27 133 -65 6 899 324 64 0 0 chr4 41191373 41191420 -114438700 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 899 23 33 0 0 chr4 41191430 41191460 -114438660 + AT_rich Low_complexity Low_complexity 1 30 0 6 899 21 57 0 0 chr4 41191761 41191796 -114438324 + AT_rich Low_complexity Low_complexity 1 35 0 6 899 1440 50 50 0 chr4 41191805 41191987 -114438133 + B2_Mm1a SINE B2 1 191 -2 6 899 444 240 96 0 chr4 41192596 41192700 -114437420 + B3 SINE B2 90 203 -13 6 899 319 209 65 75 chr4 41192871 41192964 -114437156 - B1F SINE Alu -13 136 45 6 899 22 35 0 0 chr4 41192985 41193014 -114437106 + AT_rich Low_complexity Low_complexity 1 29 0 6 899 366 123 0 0 chr4 41193031 41193088 -114437032 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 899 573 158 0 0 chr4 41193088 41193189 -114436931 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 899 380 349 106 0 chr4 41193191 41193323 -114436797 - RSINE1 SINE B4 -2 163 18 6 899 218 282 91 34 chr4 41193342 41193353 -114436767 + ID SINE ID 70 85 -139 6 899 234 287 55 18 chr4 41193353 41193463 -114436657 + B1F2 SINE Alu 1 114 -3 6 899 425 200 60 60 chr4 41193547 41193560 -114436560 - PB1D9 SINE Alu 0 120 109 6 899 198 0 0 0 chr4 41193560 41193582 -114436538 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 899 425 200 60 60 chr4 41193582 41193685 -114436435 - PB1D9 SINE Alu -12 108 4 6 899 240 35 0 0 chr4 41193695 41193724 -114436396 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 6 899 443 333 18 30 chr4 41193732 41193899 -114436221 - RSINE1 SINE B4 0 165 1 6 899 236 280 75 0 chr4 41194240 41194333 -114435787 + L1MC4 LINE L1 7488 7587 -455 6 899 776 231 108 16 chr4 41194745 41194930 -114435190 - ID_B1 SINE B4 -18 206 5 6 899 640 209 80 22 chr4 41195133 41195270 -114434850 + B1_Mur2 SINE Alu 5 149 0 6 899 321 350 24 32 chr4 41195415 41195539 -114434581 - RSINE1 SINE B4 0 165 43 6 899 562 188 0 10 chr4 41195742 41195839 -114434281 + B3 SINE B2 9 104 -112 6 899 895 239 14 56 chr4 41196042 41196255 -114433865 + B3 SINE B2 10 213 -3 6 899 572 84 0 0 chr4 41196275 41196358 -114433762 + B1_Mm SINE Alu 65 147 0 6 899 327 182 0 0 chr4 41196358 41196435 -114433685 + A-rich Low_complexity Low_complexity 1 77 0 6 899 418 274 35 0 chr4 41196545 41196658 -114433462 + B1F SINE Alu 24 140 -9 6 899 347 280 16 63 chr4 41196658 41196671 -114433449 + ID_B1 SINE B4 105 224 0 6 899 202 196 19 19 chr4 41196875 41196927 -114433193 + (TTA)n Simple_repeat Simple_repeat 1 52 0 6 899 1808 94 208 0 chr4 41197013 41197331 -114432789 + ORR1B1 LTR MaLR 3 386 -8 6 899 259 121 79 79 chr4 41197328 41197391 -114432729 - PB1D9 SINE Alu -11 109 47 6 899 251 176 19 19 chr4 41197345 41197397 -114432723 - RLTR25B LTR ERVK -533 495 444 6 899 253 353 0 41 chr4 41197689 41197810 -114432310 + PB1D10 SINE Alu 1 116 -1 6 899 295 298 135 47 chr4 41197880 41198028 -114432092 + RSINE1 SINE B4 3 163 -2 6 899 29 47 0 0 chr4 41198029 41198072 -114432048 + AT_rich Low_complexity Low_complexity 1 43 0 6 899 303 284 14 0 chr4 41198211 41198285 -114431835 + ID4_ SINE ID 3 77 -6 6 899 206 128 0 25 chr4 41198310 41198350 -114431770 + GA-rich Low_complexity Low_complexity 1 39 0 6 899 439 32 16 0 chr4 41198815 41198877 -114431243 + B1_Mm SINE Alu 85 147 0 6 899 541 278 35 0 chr4 41198930 41199074 -114431046 + B1_Mur1 SINE Alu 1 149 0 6 899 271 192 133 27 chr4 41199954 41200029 -114430091 + RLTR25B LTR ERVK 427 509 -519 6 899 782 30 0 0 chr4 41199971 41200072 -114430048 + B1_Mus2 SINE Alu 47 147 0 6 899 437 137 27 0 chr4 41200128 41200201 -114429919 + ID_B1 SINE B4 145 219 -5 6 899 722 215 155 10 chr4 41200608 41200801 -114429319 + ID_B1 SINE B4 3 223 -1 6 899 265 176 59 0 chr4 41200804 41200855 -114429265 + B3 SINE B2 1 54 -162 6 899 383 250 22 0 chr4 41201008 41201100 -114429020 + ORR1C2 LTR MaLR 1 94 -280 6 899 515 192 0 20 chr4 41201110 41201211 -114428909 + PB1D9 SINE Alu 14 112 -8 6 899 436 136 225 9 chr4 41201223 41201334 -114428786 + ORR1C2 LTR MaLR 95 229 -155 6 899 1195 61 0 0 chr4 41201434 41201581 -114428539 - B1_Mus1 SINE Alu 0 148 2 6 899 298 359 34 17 chr4 41201854 41201973 -114428147 - RSINE1 SINE B4 -16 149 29 6 899 336 300 0 0 chr4 41202143 41202223 -114427897 - ID4_ SINE ID -2 81 2 6 899 371 253 25 0 chr4 41202281 41202360 -114427760 - PB1D10 SINE Alu -4 113 33 6 899 1196 54 7 0 chr4 41202414 41202561 -114427559 + B1_Mus1 SINE Alu 1 148 0 6 899 25 0 0 0 chr4 41202561 41202586 -114427534 + AT_rich Low_complexity Low_complexity 1 25 0 6 899 383 318 42 72 chr4 41202593 41202759 -114427361 + RSINE1 SINE B4 3 163 -2 6 899 254 322 78 9 chr4 41203456 41203572 -114426548 - RSINE1 SINE B4 -21 144 21 6 899 214 162 0 0 chr4 41203646 41203683 -114426437 + ID4_ SINE ID 32 68 -15 6 899 218 333 48 0 chr4 41204054 41204138 -114425982 - B1F1 SINE Alu -45 104 17 6 899 239 274 82 12 chr4 41204216 41204301 -114425819 - MIR SINE MIR -169 93 3 6 899 1380 84 21 0 chr4 41204454 41204644 -114425476 - B2_Mm2 SINE B2 0 195 2 6 899 1001 46 122 0 chr4 41205253 41205384 -114424736 - B1_Mus2 SINE Alu 0 147 1 6 899 23 0 0 0 chr4 41205394 41205417 -114424703 + AT_rich Low_complexity Low_complexity 1 23 0 6 899 368 225 0 36 chr4 41205424 41205507 -114424613 - ID4 SINE ID -1 82 3 6 899 425 176 138 9 chr4 41205926 41206035 -114424085 + B1_Mm SINE Alu 24 146 -1 6 899 237 266 47 0 chr4 41206048 41206112 -114424008 + ID_B1 SINE B4 152 218 -6 6 899 606 262 30 30 chr4 41206357 41206526 -114423594 + B3A SINE B2 1 169 -29 6 899 311 268 12 35 chr4 41206641 41206726 -114423394 + PB1D10 SINE Alu 27 109 -8 6 899 323 257 14 0 chr4 41206721 41206795 -114423325 + RSINE1 SINE B4 10 84 -81 6 899 433 236 35 140 chr4 41206915 41206970 -114423150 - B1_Mur1 SINE Alu -20 129 84 6 899 574 0 0 0 chr4 41206970 41207040 -114423080 - L1Md_A LINE L1 0 6582 6513 6 899 433 236 35 140 chr4 41207040 41207127 -114422993 - B1_Mur1 SINE Alu -66 83 2 6 899 231 239 30 129 chr4 41207041 41207142 -114422978 - MT2B LTR ERVL -363 238 148 6 899 481 209 44 26 chr4 41207158 41207271 -114422849 + B1_Mur2 SINE Alu 2 116 -33 7 899 418 192 155 0 chr4 41207367 41207465 -114422655 + B1_Mur3 SINE Alu 1 113 -7 7 899 1572 43 16 0 chr4 41207577 41207765 -114422355 + B2_Mm2 SINE B2 2 192 -3 7 899 330 310 89 16 chr4 41207781 41207971 -114422149 - Tigger10 DNA Tigger -54 1789 1586 7 899 933 133 68 57 chr4 41208260 41208452 -114421668 - B2_Mm2 SINE B2 0 195 2 7 899 525 202 42 0 chr4 41208542 41208661 -114421459 + B1_Mus1 SINE Alu 2 125 -23 7 899 522 253 97 14 chr4 41208685 41208849 -114421271 + B4A SINE B4 43 220 -72 7 899 803 146 14 7 chr4 41209009 41209147 -114420973 + B1_Mur4 SINE Alu 7 145 -5 7 899 575 35 47 0 chr4 41209147 41209233 -114420887 + B1_Mus1 SINE Alu 5 94 -54 7 899 180 0 0 0 chr4 41209238 41209258 -114420862 + (A)n Simple_repeat Simple_repeat 1 20 0 7 899 590 162 342 6 chr4 41209258 41209419 -114420701 + B3 SINE B2 2 216 0 7 899 226 77 103 0 chr4 41209603 41209642 -114420478 - B3 SINE B2 -27 189 147 7 899 531 259 30 0 chr4 41210019 41210150 -114419970 + B1_Mur1 SINE Alu 3 137 -12 7 899 216 0 0 0 chr4 41210253 41210277 -114419843 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 7 899 1158 22 0 7 chr4 41210277 41210414 -114419706 - B1_Mm SINE Alu -11 136 1 7 899 233 282 161 37 chr4 41210458 41210539 -114419581 - ID_B1 SINE B4 -119 105 15 7 899 287 326 0 39 chr4 41210564 41210666 -114419454 + PB1D10 SINE Alu 14 111 -6 7 899 1241 34 0 0 chr4 41210672 41210818 -114419302 + B1_Mm SINE Alu 2 147 0 7 899 463 256 163 25 chr4 41210863 41211059 -114419061 + ID_B1 SINE B4 2 224 0 7 899 295 297 44 0 chr4 41211147 41211238 -114418882 - B1_Mur2 SINE Alu -11 138 44 7 899 458 163 11 11 chr4 41211407 41211494 -114418626 - B1_Mus2 SINE Alu -15 132 46 7 899 1115 118 14 106 chr4 41211506 41211529 -114418591 - B2_Mm2 SINE B2 -5 190 171 7 899 1182 68 0 0 chr4 41211529 41211677 -114418443 + B1_Mus1 SINE Alu 1 148 0 7 899 1115 118 14 106 chr4 41211677 41211861 -114418259 - B2_Mm2 SINE B2 -25 170 2 7 899 661 193 0 28 chr4 41211951 41212095 -114418025 - B1_Mur3 SINE Alu 0 149 10 7 899 1179 81 105 0 chr4 41212319 41212491 -114417629 + B2_Mm2 SINE B2 5 194 -1 7 899 1523 28 22 0 chr4 41212493 41212674 -114417446 + B2_Mm2 SINE B2 2 186 -9 7 899 254 246 58 58 chr4 41213813 41213934 -114416186 - L1MB8 LINE L1 -1 6183 6063 7 899 245 225 68 14 chr4 41214231 41214321 -114415799 - B1_Mur2 SINE Alu -5 144 24 7 899 808 44 272 0 chr4 41214343 41214457 -114415663 + B1_Mus2 SINE Alu 1 145 -2 7 899 334 0 21 21 chr4 41214457 41214504 -114415616 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 899 364 215 151 0 chr4 41214524 41214617 -114415503 + B1_Mur1 SINE Alu 6 112 -37 7 899 219 36 0 0 chr4 41214678 41214706 -114415414 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 899 404 278 61 25 chr4 41214956 41214983 -114415137 + CYRA11_Mm Unknown Y-chromosome 143 176 -441 7 899 1055 178 23 27 chr4 41214983 41215202 -114414918 - URR1B DNA MER1_type -2 223 6 7 899 534 283 0 7 chr4 41215400 41215546 -114414574 + B1F2 SINE Alu 4 148 -1 7 899 557 189 48 32 chr4 41215566 41215692 -114414428 + B1_Mur4 SINE Alu 23 150 0 7 899 301 243 78 43 chr4 41215791 41215907 -114414213 + B3A SINE B2 68 187 -11 7 899 1709 26 0 0 chr4 41215929 41216121 -114413999 + B2_Mm1a SINE B2 2 193 0 7 899 1336 95 0 6 chr4 41216343 41216523 -114413597 + B2_Mm2 SINE B2 2 180 -15 7 899 1070 99 0 0 chr4 41216526 41216667 -114413453 + B1_Mus1 SINE Alu 2 142 -6 7 899 704 229 20 0 chr4 41216688 41216841 -114413279 + B3 SINE B2 1 156 -60 7 899 21 0 0 0 chr4 41216849 41216870 -114413250 + AT_rich Low_complexity Low_complexity 1 21 0 7 899 843 232 55 10 chr4 41216880 41217080 -114413040 - B3 SINE B2 -5 211 3 7 899 1349 81 49 0 chr4 41217266 41217451 -114412669 + B2_Mm2 SINE B2 2 195 0 7 899 218 248 110 73 chr4 41217462 41217496 -114412624 - B4 SINE B4 -179 113 1 7 899 425 173 0 0 chr4 41217496 41217571 -114412549 - B2_Mm2 SINE B2 -120 75 1 7 899 692 271 7 0 chr4 41217613 41217768 -114412352 - RSINE1 SINE B4 -6 159 4 7 899 554 261 119 26 chr4 41217780 41217973 -114412147 - B3 SINE B2 -5 211 1 7 899 748 128 21 76 chr4 41217974 41218118 -114412002 - B1_Mur3 SINE Alu -13 136 1 7 899 1007 101 138 6 chr4 41218355 41218515 -114411605 + B2_Mm2 SINE B2 1 181 -14 7 899 302 116 319 18 chr4 41218528 41218641 -114411479 + B2_Mm2 SINE B2 47 193 -2 7 899 684 113 0 57 chr4 41218928 41219050 -114411070 + B2_Mm2 SINE B2 47 161 -34 7 899 506 16 16 0 chr4 41219054 41219117 -114411003 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 7 899 246 222 139 0 chr4 41219523 41219595 -114410525 + B1F SINE Alu 12 93 -56 7 899 734 179 60 0 chr4 41220395 41220529 -114409591 + B1_Mur4 SINE Alu 3 144 -6 7 899 666 182 30 22 chr4 41220785 41220920 -114409200 + B1_Mur3 SINE Alu 7 142 -7 7 899 316 257 0 0 chr4 41220940 41221014 -114409106 + PB1D10 SINE Alu 37 110 -7 7 899 472 144 339 9 chr4 41223074 41223186 -114406934 - B1_Mur3 SINE Alu 0 149 1 7 899 1370 58 23 0 chr4 41223244 41223418 -114406702 + B2_Mm2 SINE B2 4 181 -14 7 899 746 264 96 0 chr4 41223610 41223788 -114406332 - B3 SINE B2 -13 203 9 7 899 968 34 0 0 chr4 41223819 41223936 -114406184 + B1_Mm SINE Alu 31 147 0 7 899 413 182 42 21 chr4 41224064 41224175 -114405945 + B1_Mur3 SINE Alu 9 149 0 7 899 865 184 0 0 chr4 41224648 41224784 -114405336 + B1_Mus1 SINE Alu 1 136 -12 7 899 296 297 54 25 chr4 41224785 41225027 -114405093 - RMER17A LTR ERVK -331 420 172 7 899 544 188 60 35 chr4 41225001 41225117 -114405003 + B1_Mus1 SINE Alu 11 129 -19 7 899 394 250 62 0 chr4 41225161 41225273 -114404847 + ID_B1 SINE B4 104 222 -2 7 899 227 220 136 0 chr4 41225347 41225406 -114404714 - ID4_ SINE ID -14 69 3 7 899 23 33 0 0 chr4 41225490 41225520 -114404600 + AT_rich Low_complexity Low_complexity 1 30 0 7 899 592 238 0 32 chr4 41225522 41225648 -114404472 - B1_Mus1 SINE Alu 0 148 27 7 899 1205 62 0 0 chr4 41225656 41225802 -114404318 + B1_Mm SINE Alu 2 147 0 7 899 375 121 0 0 chr4 41225802 41225860 -114404260 + (A)n Simple_repeat Simple_repeat 1 58 0 7 899 416 182 0 0 chr4 41225860 41225926 -114404194 - B3 SINE B2 -148 68 3 7 899 478 232 99 46 chr4 41225938 41226069 -114404051 - B3A SINE B2 -1 197 60 7 899 588 185 0 0 chr4 41226076 41226168 -114403952 + B3 SINE B2 2 93 -123 7 899 213 65 0 0 chr4 41226739 41226770 -114403350 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 899 304 214 162 19 chr4 41226773 41226878 -114403242 - PB1D9 SINE Alu 0 120 1 7 899 465 294 0 9 chr4 41226878 41226988 -114403132 - PB1D7 SINE Alu 0 120 12 7 899 1302 74 25 55 chr4 41227020 41227133 -114402987 + B2_Mm2 SINE B2 2 113 -82 7 899 1813 166 62 79 chr4 41227133 41227551 -114402569 - RLTR9F LTR ERVK -4 411 1 7 899 1302 74 25 55 chr4 41227551 41227615 -114402505 + B2_Mm2 SINE B2 114 170 -25 7 899 1161 54 0 26 chr4 41227615 41227767 -114402353 + B1_Mus1 SINE Alu 1 148 0 7 899 1302 74 25 55 chr4 41227767 41227788 -114402332 + B2_Mm2 SINE B2 171 195 0 7 899 981 205 75 5 chr4 41227806 41228007 -114402113 + B3 SINE B2 2 216 0 7 899 1132 101 0 0 chr4 41228032 41228180 -114401940 + B1_Mus1 SINE Alu 1 148 0 7 899 221 0 0 33 chr4 41228183 41228213 -114401907 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 899 847 182 7 13 chr4 41228222 41228372 -114401748 + B1_Mur3 SINE Alu 1 149 0 7 899 225 154 0 0 chr4 41228372 41228411 -114401709 + (CATA)n Simple_repeat Simple_repeat 2 40 0 7 899 603 127 28 20 chr4 41228500 41228634 -114401486 + B1_Mur4 SINE Alu 13 150 0 7 899 282 251 62 19 chr4 41228918 41229027 -114401093 - B1_Mur2 SINE Alu -1 148 35 7 899 267 307 47 56 chr4 41229039 41229146 -114400974 - B1F2 SINE Alu -9 108 3 7 899 225 286 37 61 chr4 41229073 41229155 -114400965 - ID_B1 SINE B4 -68 156 77 7 899 207 170 0 41 chr4 41229214 41229263 -114400857 + A-rich Low_complexity Low_complexity 4 50 0 7 899 305 228 0 0 chr4 41229322 41229379 -114400741 - MIR SINE MIR -123 139 83 7 899 22 0 0 0 chr4 41229441 41229463 -114400657 + AT_rich Low_complexity Low_complexity 1 22 0 7 899 275 253 176 0 chr4 41229889 41229980 -114400140 + B1F SINE Alu 22 128 -21 7 899 330 162 62 18 chr4 41229993 41230033 -114400087 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 7 899 1510 58 16 5 chr4 41230033 41230225 -114399895 + B2_Mm2 SINE B2 2 195 0 7 899 330 162 62 18 chr4 41230225 41230297 -114399823 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 7 899 1038 45 96 15 chr4 41230341 41230477 -114399643 + B1_Mus2 SINE Alu 1 147 0 7 899 234 81 0 0 chr4 41230479 41230516 -114399604 + (A)n Simple_repeat Simple_repeat 1 37 0 7 899 292 115 32 32 chr4 41230516 41230579 -114399541 + GA-rich Low_complexity Low_complexity 2 64 0 7 899 419 182 258 55 chr4 41230719 41230882 -114399238 + B3A SINE B2 2 197 -1 7 899 250 294 58 14 chr4 41230891 41230960 -114399160 + ID SINE ID 2 73 -151 8 899 682 147 138 8 chr4 41231076 41231206 -114398914 + B1_Mur4 SINE Alu 2 148 -2 8 899 690 178 15 15 chr4 41232151 41232282 -114397838 + B1_Mur1 SINE Alu 1 131 -18 8 899 512 239 53 0 chr4 41232305 41232418 -114397702 + RSINE1 SINE B4 16 134 -31 8 899 220 186 47 0 chr4 41232689 41232732 -114397388 - ID4_ SINE ID -38 45 1 8 899 245 29 0 29 chr4 41232748 41232783 -114397337 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 899 2339 85 3 9 chr4 41232948 41233269 -114396851 + ORR1A2 LTR MaLR 1 319 -8 8 899 286 328 101 78 chr4 41233795 41233924 -114396196 - B1F1 SINE Alu -17 132 1 8 899 189 0 0 0 chr4 41234034 41234055 -114396065 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 899 547 234 2 11 chr4 41234055 41234171 -114395949 - B1_Mur1 SINE Alu -9 118 1 8 899 211 220 20 0 chr4 41234171 41234221 -114395899 + GA-rich Low_complexity Low_complexity 1 51 0 8 899 468 96 0 76 chr4 41234245 41234324 -114395796 - B1_Mur4 SINE Alu 0 150 78 8 899 547 117 2 18 chr4 41234333 41234442 -114395678 + ORR1A2 LTR MaLR 1 140 -227 8 899 308 276 109 30 chr4 41234471 41234572 -114395548 - ID_B1 SINE B4 -60 164 56 8 899 235 191 0 60 chr4 41234563 41234613 -114395507 - PB1D10 SINE Alu -46 71 25 8 899 194 81 0 26 chr4 41234656 41234662 -114395458 + (TTTTTG)n Simple_repeat Simple_repeat 4 9 0 8 899 357 264 0 27 chr4 41234662 41234736 -114395384 - ID4 SINE ID -10 73 2 8 899 194 81 0 26 chr4 41234736 41234767 -114395353 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 8 899 444 252 154 54 chr4 41234767 41234897 -114395223 - B1F2 SINE Alu 0 149 7 8 899 381 296 101 31 chr4 41234781 41234910 -114395210 - B4 SINE B4 -74 218 81 8 899 354 271 172 0 chr4 41234908 41235030 -114395090 - ID_B1 SINE B4 0 224 82 8 899 296 200 11 0 chr4 41235240 41235335 -114394785 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 899 323 22 21 43 chr4 41235338 41235385 -114394735 + HAL1-3A_ME LINE L1 1974 2019 -839 8 899 330 271 93 99 chr4 41235539 41235570 -114394550 + B4 SINE B4 51 80 -212 8 899 827 170 35 21 chr4 41235570 41235714 -114394406 + B1_Mus1 SINE Alu 1 146 -2 8 899 422 257 80 35 chr4 41235927 41236040 -114394080 - PB1D9 SINE Alu 0 120 3 8 899 396 276 151 52 chr4 41236040 41236188 -114393932 - ID_B1 SINE B4 0 224 17 8 899 432 0 0 0 chr4 41236226 41236274 -114393846 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 899 231 308 139 36 chr4 41236389 41236554 -114393566 - ORR1E LTR MaLR -177 182 1 8 899 295 197 145 0 chr4 41236741 41236817 -114393303 + B1F SINE Alu 2 88 -61 8 899 229 261 48 124 chr4 41237199 41237222 -114392898 + B1F1 SINE Alu 12 108 -41 8 899 298 296 0 12 chr4 41237222 41237304 -114392816 + ID_B1 SINE B4 106 186 -38 8 899 683 198 124 21 chr4 41237351 41237537 -114392583 - B3 SINE B2 -10 206 2 8 899 989 232 31 21 chr4 41237566 41237760 -114392360 - B3 SINE B2 -20 196 1 8 899 330 107 0 0 chr4 41239609 41239665 -114390455 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 899 460 136 83 28 chr4 41240412 41240556 -114389564 + RMER17C LTR ERVK 123 274 -136 8 899 1198 35 14 0 chr4 41241639 41241784 -114388336 - B1_Mus2 SINE Alu 0 147 1 8 899 631 202 97 0 chr4 41241784 41241908 -114388212 + B1_Mur1 SINE Alu 14 149 0 8 899 227 296 84 0 chr4 41242035 41242106 -114388014 + RSINE1 SINE B4 28 104 -61 8 899 22 0 0 0 chr4 41242289 41242311 -114387809 + AT_rich Low_complexity Low_complexity 1 22 0 8 899 850 37 0 0 chr4 41242311 41242419 -114387701 - B1_Mus2 SINE Alu 0 147 40 8 899 467 189 157 35 chr4 41242549 41242664 -114387456 - B1_Mur1 SINE Alu -20 129 1 8 899 396 213 168 73 chr4 41242664 41242710 -114387410 - B4A SINE B4 -185 107 49 8 899 220 299 90 13 chr4 41242664 41242742 -114387378 - B2_Mm2 SINE B2 -102 93 10 8 899 21 36 0 0 chr4 41243973 41244001 -114386119 + AT_rich Low_complexity Low_complexity 1 28 0 8 899 1315 97 6 0 chr4 41244042 41244218 -114385902 + B2_Mm1t SINE B2 2 178 -15 8 899 207 0 0 0 chr4 41244218 41244241 -114385879 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 899 527 250 53 30 chr4 41244257 41244389 -114385731 + B1F1 SINE Alu 11 145 -4 8 899 597 261 67 0 chr4 41244392 41244511 -114385609 + B1_Mm SINE Alu 1 127 -20 8 899 356 0 23 0 chr4 41244518 41244562 -114385558 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 8 899 1652 27 5 0 chr4 41244980 41245168 -114384952 - B2_Mm1t SINE B2 -4 189 1 8 899 1184 89 83 0 chr4 41245785 41245954 -114384166 - B2_Mm1t SINE B2 -9 184 2 8 899 554 243 18 0 chr4 41246775 41246888 -114383232 - PB1D7 SINE Alu -8 119 1 8 899 442 176 15 0 chr4 41246957 41247025 -114383095 - B1_Mur3 SINE Alu -78 71 3 8 899 640 281 99 42 chr4 41247044 41247243 -114382877 + ID_B1 SINE B4 4 217 -7 8 899 526 218 45 0 chr4 41247332 41247442 -114382678 - B1_Mur3 SINE Alu -34 115 1 8 899 241 311 0 26 chr4 41247612 41247688 -114382432 - PB1D10 SINE Alu -15 102 29 8 899 476 256 0 62 chr4 41247834 41247852 -114382268 + ID_B1 SINE B4 72 223 -1 8 899 767 135 21 21 chr4 41247852 41247996 -114382124 + B1_Mur4 SINE Alu 6 149 -1 8 899 449 261 11 0 chr4 41248016 41248108 -114382012 + B1F SINE Alu 45 137 -12 8 899 283 221 128 0 chr4 41248567 41248653 -114381467 + PB1D10 SINE Alu 5 101 -16 8 899 412 290 81 27 chr4 41248665 41248814 -114381306 + RSINE1 SINE B4 1 157 -8 8 899 616 141 124 0 chr4 41248949 41249070 -114381050 + B1_Mur2 SINE Alu 14 149 0 8 899 517 263 105 0 chr4 41249974 41250107 -114380013 - B1_Mur1 SINE Alu -1 148 2 8 899 442 182 33 33 chr4 41250108 41250199 -114379921 - B1_Mur1 SINE Alu -1 148 58 8 899 744 139 0 0 chr4 41250202 41250310 -114379810 + 5S rRNA rRNA 13 120 -1 8 899 302 244 143 11 chr4 41250337 41250428 -114379692 - RSINE1 SINE B4 -61 104 2 8 899 338 296 113 45 chr4 41250480 41250657 -114379463 + B3A SINE B2 5 193 -5 8 899 342 225 204 18 chr4 41251198 41251243 -114378877 + RSINE1 SINE B4 3 62 -103 8 899 198 0 0 0 chr4 41251243 41251265 -114378855 + (C)n Simple_repeat Simple_repeat 1 22 0 8 899 342 225 204 18 chr4 41251265 41251332 -114378788 + RSINE1 SINE B4 63 135 -30 8 899 362 235 99 70 chr4 41251332 41251365 -114378755 + MT2B LTR ERVL 119 155 -446 8 899 607 221 41 8 chr4 41251365 41251488 -114378632 + B1_Mus1 SINE Alu 1 127 -21 8 899 317 252 236 7 chr4 41251604 41251748 -114378372 - MTE2b LTR MaLR -12 367 191 8 899 241 309 115 51 chr4 41251673 41251830 -114378290 - MT2A LTR ERVL -290 243 77 8 899 342 242 0 0 chr4 41251775 41251841 -114378279 - MTE2b LTR MaLR -248 131 66 8 899 546 184 41 66 chr4 41252153 41252275 -114377845 - B1_Mur1 SINE Alu 0 149 31 8 899 425 221 216 24 chr4 41252296 41252421 -114377699 - ID_B1 SINE B4 -3 221 73 8 899 762 156 111 0 chr4 41252747 41252882 -114377238 - B1_Mur4 SINE Alu 0 150 1 8 899 403 289 27 53 chr4 41252931 41253081 -114377039 - B1F1 SINE Alu -3 146 1 8 899 278 214 64 101 chr4 41253081 41253129 -114376991 - B4A SINE B4 -212 80 37 8 899 694 182 80 0 chr4 41253353 41253490 -114376630 - B1_Mus1 SINE Alu 0 148 1 8 899 267 261 114 0 chr4 41254196 41254284 -114375836 + MER90 LTR ERV1 6 103 -472 8 899 434 211 63 0 chr4 41254626 41254721 -114375399 + B1_Mm SINE Alu 39 139 -8 8 899 233 350 0 81 chr4 41254750 41254837 -114375283 + B1F SINE Alu 11 90 -59 8 899 1056 80 0 0 chr4 41255276 41255413 -114374707 + B1_Mm SINE Alu 11 147 0 8 899 444 118 0 0 chr4 41255789 41255857 -114374263 + (CCTA)n Simple_repeat Simple_repeat 3 70 0 8 899 369 205 13 13 chr4 41255858 41255962 -114374158 - PB1D9 SINE Alu -12 108 2 8 899 254 241 0 33 chr4 41256075 41256135 -114373985 + ID_B1 SINE B4 113 170 -54 8 899 280 77 0 37 chr4 41256281 41256335 -114373785 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 8 899 1022 110 0 20 chr4 41256343 41256492 -114373628 + B1_Mus1 SINE Alu 2 147 -1 8 899 1622 36 0 5 chr4 41256513 41256706 -114373414 + B2_Mm1t SINE B2 2 193 0 8 899 526 209 235 33 chr4 41256731 41256968 -114373152 + Lx6 LINE L1 7176 7460 0 8 899 1189 56 21 0 chr4 41256980 41257124 -114372996 + B1_Mm SINE Alu 1 147 0 8 899 274 23 23 23 chr4 41257126 41257170 -114372950 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 899 836 225 33 6 chr4 41257194 41257377 -114372743 + B3 SINE B2 29 216 0 8 899 407 306 72 36 chr4 41257379 41257518 -114372602 + ID_B1 SINE B4 80 223 -1 8 899 603 173 9 9 chr4 41257611 41257722 -114372398 + B1_Mur4 SINE Alu 19 129 -21 8 899 448 233 83 8 chr4 41257748 41257869 -114372251 + RSINE1 SINE B4 34 163 -2 8 899 1130 180 24 0 chr4 41257953 41258159 -114371961 - B3 SINE B2 -1 215 5 8 899 383 250 163 8 chr4 41258543 41258672 -114371448 - RSINE1 SINE B4 0 165 17 8 899 426 203 169 68 chr4 41258740 41258888 -114371232 - RSINE1 SINE B4 0 165 3 8 899 473 236 9 19 chr4 41259123 41259231 -114370889 - U6 snRNA snRNA 0 107 1 9 899 310 278 2 50 chr4 41259445 41259557 -114370563 - PB1D10 SINE Alu 0 120 16 9 899 207 0 0 0 chr4 41259962 41259985 -114370135 + (A)n Simple_repeat Simple_repeat 1 23 0 9 899 230 269 8 111 chr4 41260044 41260070 -114370050 + MT2B LTR ERVL 160 210 -391 9 899 256 227 76 0 chr4 41260070 41260136 -114369984 + 4.5SRNA scRNA scRNA 14 84 -10 9 899 642 130 9 9 chr4 41260088 41260197 -114369923 + B1_Mus1 SINE Alu 40 148 0 9 899 230 269 8 111 chr4 41260136 41260161 -114369959 + MT2B LTR ERVL 211 264 -337 9 899 201 267 33 0 chr4 41261768 41261828 -114368292 + GA-rich Low_complexity Low_complexity 3 64 0 9 899 717 213 7 41 chr4 41262996 41263143 -114366977 - B1_Mur1 SINE Alu -2 147 6 9 899 273 57 0 0 chr4 41264096 41264131 -114365989 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 9 899 804 102 17 8 chr4 41264132 41264251 -114365869 - PB1D9 SINE Alu 0 120 1 9 899 1246 66 70 32 chr4 41264389 41264576 -114365544 - B2_Mm2 SINE B2 -1 194 1 9 899 225 300 0 28 chr4 41264576 41264648 -114365472 + T-rich Low_complexity Low_complexity 3 72 0 9 899 342 308 26 0 chr4 41264786 41264903 -114365217 - PB1D7 SINE Alu 0 120 1 9 899 220 289 13 13 chr4 41265025 41265102 -114365018 + (TATG)n Simple_repeat Simple_repeat 3 79 0 9 899 1292 155 194 21 chr4 41265105 41265387 -114364733 + ORR1D1 LTR MaLR 1 331 -43 9 899 930 148 10 96 chr4 41265387 41265646 -114364474 + B2_Mm2 SINE B2 1 216 0 9 899 220 139 28 0 chr4 41266026 41266062 -114364058 + PB1D9 SINE Alu 1 37 -83 9 899 289 314 29 0 chr4 41266521 41266626 -114363494 + PB1D10 SINE Alu 1 108 -9 9 899 552 254 9 0 chr4 41266647 41266761 -114363359 + ID_B1 SINE B4 94 208 -16 9 899 4529 163 39 37 chr4 41266766 41267656 -114362464 + Lx5 LINE L1 6159 7050 0 9 899 22 0 0 0 chr4 41267670 41267692 -114362428 + AT_rich Low_complexity Low_complexity 1 22 0 9 899 386 304 35 21 chr4 41267697 41267838 -114362282 + BC1_Mm scRNA scRNA 2 144 -8 9 899 308 259 24 12 chr4 41268138 41268220 -114361900 - ID4 SINE ID 0 83 1 9 899 265 142 87 4 chr4 41268336 41268406 -114361714 - B1F SINE Alu 0 149 45 9 899 258 272 278 9 chr4 41268511 41268626 -114361494 + RSINE1 SINE B4 3 148 -17 9 899 198 71 0 0 chr4 41268626 41268654 -114361466 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 899 466 17 0 0 chr4 41268701 41268761 -114361359 - B2_Mm1a SINE B2 -7 186 127 9 899 1319 85 17 6 chr4 41268795 41268973 -114361147 - B2_Mm2 SINE B2 -13 182 3 9 899 560 319 14 0 chr4 41269169 41269313 -114360807 + RSINE1 SINE B4 8 153 -12 9 899 300 260 113 19 chr4 41269340 41269446 -114360674 + PB1D7 SINE Alu 5 120 0 9 899 242 272 130 0 chr4 41269489 41269581 -114360539 + ID_B1 SINE B4 98 201 -23 9 899 555 16 0 0 chr4 41269584 41269648 -114360472 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 9 899 998 213 25 5 chr4 41270171 41270374 -114359746 + B3 SINE B2 4 210 -6 9 899 303 200 18 0 chr4 41270468 41270523 -114359597 - B3 SINE B2 -145 71 16 9 899 1294 87 5 31 chr4 41270613 41270804 -114359316 - B2_Mm1a SINE B2 -1 192 7 9 899 2169 78 11 123 chr4 41271108 41271173 -114358947 - ORR1A2 LTR MaLR -1 326 289 9 899 638 54 0 0 chr4 41271173 41271265 -114358855 - L1_Mus3 LINE L1 0 6638 6547 9 899 2169 78 11 123 chr4 41271265 41271566 -114358554 - ORR1A2 LTR MaLR -39 288 1 9 899 1174 261 77 8 chr4 41271657 41272009 -114358111 + MTE2a LTR MaLR 3 378 -1 9 899 328 286 146 26 chr4 41272384 41272535 -114357585 + MTEa LTR MaLR 205 373 -6 9 899 1154 55 0 0 chr4 41272624 41272767 -114357353 + B2_Mm2 SINE B2 2 144 -51 9 899 1118 88 0 0 chr4 41272767 41272914 -114357206 + B1_Mus2 SINE Alu 1 147 0 9 899 282 97 0 16 chr4 41272950 41273013 -114357107 + B2_Mm2 SINE B2 134 195 0 9 899 296 284 11 11 chr4 41273476 41273565 -114356555 - MER34A LTR ERV1 -475 96 8 9 899 1120 65 0 7 chr4 41273695 41273835 -114356285 + B1_Mus2 SINE Alu 1 139 -8 9 899 323 305 98 15 chr4 41273846 41273979 -114356141 + ID_B1 SINE B4 66 209 -15 9 899 793 278 91 0 chr4 41274076 41274328 -114355792 - MTD LTR MaLR -13 406 132 9 899 756 107 128 15 chr4 41274347 41274480 -114355640 + B1_Mus1 SINE Alu 1 148 0 9 899 677 208 37 18 chr4 41274497 41274668 -114355452 - B3A SINE B2 -9 186 2 9 899 669 187 7 67 chr4 41274670 41274819 -114355301 - MTD LTR MaLR -275 144 5 9 899 267 266 52 31 chr4 41274821 41274918 -114355202 + RSINE1 SINE B4 44 142 -23 9 899 398 69 0 17 chr4 41275007 41275066 -114355054 + (GAAAA)n Simple_repeat Simple_repeat 3 60 0 9 899 632 71 12 0 chr4 41275109 41275194 -114354926 - B1_Mus2 SINE Alu -57 90 5 9 899 1709 137 112 14 chr4 41275198 41275494 -114354626 - ORR1B2 LTR MaLR -39 328 4 9 899 741 186 16 0 chr4 41275762 41275886 -114354234 - B1_Mur1 SINE Alu 0 149 24 9 899 22 0 0 0 chr4 41275914 41275936 -114354184 + AT_rich Low_complexity Low_complexity 1 22 0 9 899 182 349 93 2 chr4 41275951 41276078 -114354042 - MIRc SINE MIR -69 199 62 9 899 2614 157 44 53 chr4 41276258 41276783 -114353337 - RLTR11A LTR ERVK -2 526 7 9 899 939 137 0 7 chr4 41277027 41277167 -114352953 - B1_Mus1 SINE Alu -5 143 5 9 899 305 265 44 0 chr4 41277286 41277354 -114352766 - B1F SINE Alu -48 101 31 9 899 484 240 0 20 chr4 41277369 41277467 -114352653 - RLTR20B2 LTR ERVK 0 560 465 9 899 351 0 0 0 chr4 41277467 41277506 -114352614 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 899 297 0 0 0 chr4 41277506 41277538 -114352582 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 899 286 107 0 35 chr4 41277738 41277762 -114352358 + (TC)n Simple_repeat Simple_repeat 2 25 0 9 899 837 56 0 0 chr4 41277762 41277869 -114352251 + (TCTCC)n Simple_repeat Simple_repeat 4 110 0 9 899 286 107 0 35 chr4 41277869 41277902 -114352218 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 899 333 0 0 0 chr4 41277902 41277939 -114352181 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 9 899 363 206 0 14 chr4 41278926 41278995 -114351125 - ID4_ SINE ID -14 69 2 9 899 523 276 24 8 chr4 41279278 41279402 -114350718 + RSINE1 SINE B4 3 128 -37 9 899 225 283 25 8 chr4 41279406 41279527 -114350593 + (TA)n Simple_repeat Simple_repeat 1 123 0 9 899 290 325 24 24 chr4 41279612 41279738 -114350382 - ID_B1 SINE B4 0 224 99 9 899 312 295 42 0 chr4 41279651 41279746 -114350374 - B1F SINE Alu -41 108 10 9 899 231 163 0 0 chr4 41279805 41279848 -114350272 - Alu SINE Alu -102 73 31 9 899 1025 129 7 7 chr4 41280193 41280341 -114349779 + B1_Mus1 SINE Alu 1 148 0 9 899 1293 120 5 0 chr4 41280345 41280529 -114349591 + B2_Mm1a SINE B2 2 186 -7 9 899 289 79 62 31 chr4 41280553 41280618 -114349502 + B2_Mm1a SINE B2 127 193 0 9 899 860 174 0 0 chr4 41280693 41280837 -114349283 + B1_Mus1 SINE Alu 2 145 -3 9 899 835 231 65 10 chr4 41280949 41281150 -114348970 + B3 SINE B2 5 216 0 9 899 248 253 53 0 chr4 41281200 41281275 -114348845 + ID_B1 SINE B4 146 224 0 9 899 448 277 53 8 chr4 41281361 41281492 -114348628 - Tigger5 DNA MER2_type -2183 223 87 9 899 243 0 0 0 chr4 41281535 41281562 -114348558 + (T)n Simple_repeat Simple_repeat 1 27 0 9 899 491 214 71 0 chr4 41281609 41281707 -114348413 - B3 SINE B2 -111 105 1 9 899 520 204 31 0 chr4 41281755 41281853 -114348267 - PB1D10 SINE Alu -16 101 1 9 899 1081 29 73 0 chr4 41281996 41282133 -114347987 - B1_Mus2 SINE Alu 0 147 1 9 899 252 0 0 0 chr4 41282162 41282190 -114347930 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 899 627 65 0 11 chr4 41282191 41282285 -114347835 - RLTR31_Mm LTR ERVK -468 93 1 9 899 1112 216 4 26 chr4 41282667 41282895 -114347225 + Lx6 LINE L1 7198 7420 -40 9 899 718 219 138 5 chr4 41282912 41283100 -114347020 - B3 SINE B2 -3 213 1 9 899 799 172 7 7 chr4 41283356 41283502 -114346618 - B1_Mus1 SINE Alu 0 148 3 9 899 629 260 75 6 chr4 41283576 41283750 -114346370 - B3 SINE B2 -27 189 4 9 899 298 277 0 105 chr4 41283755 41283883 -114346237 - B1F1 SINE Alu -33 116 1 9 899 1423 75 0 46 chr4 41284104 41284301 -114345819 - B2_Mm2 SINE B2 -7 188 1 9 899 1283 91 51 0 chr4 41284304 41284479 -114345641 - B2_Mm2 SINE B2 -11 184 1 9 899 846 169 44 0 chr4 41284504 41284640 -114345480 - B1_Mur2 SINE Alu -7 142 1 9 899 507 299 35 7 chr4 41284739 41284884 -114345236 - RSINE1 SINE B4 0 165 17 9 899 765 258 67 16 chr4 41284937 41285130 -114344990 - ID_B1 SINE B4 -17 207 5 9 899 306 0 0 0 chr4 41285144 41285178 -114344942 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 899 762 219 0 62 chr4 41285180 41285341 -114344779 - B3A SINE B2 -45 153 3 9 899 558 225 0 62 chr4 41285343 41285471 -114344649 - ID_B1 SINE B4 0 224 105 9 899 1220 213 57 93 chr4 41285475 41285614 -114344506 + MTD LTR MaLR 58 182 -237 9 899 1021 176 56 47 chr4 41285614 41285828 -114344292 + B3 SINE B2 1 216 0 9 899 1220 213 57 93 chr4 41285828 41285852 -114344268 + MTD LTR MaLR 183 199 -220 9 899 634 172 131 0 chr4 41285852 41285974 -114344146 + B1_Mur3 SINE Alu 1 138 -11 9 899 210 71 0 0 chr4 41285974 41286002 -114344118 + (CAACC)n Simple_repeat Simple_repeat 2 29 0 9 899 1220 213 57 93 chr4 41286002 41286203 -114343917 + MTD LTR MaLR 200 410 -9 9 899 347 324 76 44 chr4 41286323 41286572 -114343548 + MER34A LTR ERV1 1 257 -314 1 899 273 269 10 70 chr4 41286832 41286932 -114343188 + MLT1B LTR MaLR 1 94 -296 1 899 940 162 0 0 chr4 41286932 41287080 -114343040 - B1_Mur4 SINE Alu 0 150 3 1 899 1555 48 16 0 chr4 41287103 41287291 -114342829 - B2_Mm2 SINE B2 -3 192 2 1 899 501 302 76 55 chr4 41287301 41287539 -114342581 + MLT1B LTR MaLR 92 334 -56 1 112 1061 102 0 45 chr4 41287575 41287729 -114342391 + B1_Mus2 SINE Alu 1 147 0 1 900 243 23 68 0 chr4 41287729 41287773 -114342347 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 900 605 161 15 99 chr4 41287786 41287917 -114342203 - B1_Mur2 SINE Alu 0 120 1 1 900 842 208 91 10 chr4 41288002 41288201 -114341919 + B3 SINE B2 1 215 -1 1 900 565 238 15 30 chr4 41288232 41288366 -114341754 + RSINE1 SINE B4 3 134 -31 1 900 450 94 0 0 chr4 41288371 41288435 -114341685 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 900 189 0 0 0 chr4 41288686 41288707 -114341413 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 900 1323 98 5 5 chr4 41288862 41289047 -114341073 + B2_Mm1a SINE B2 2 186 -7 1 900 1152 75 0 0 chr4 41289298 41289444 -114340676 + B1_Mm SINE Alu 2 147 0 1 900 198 0 0 0 chr4 41289444 41289466 -114340654 + (A)n Simple_repeat Simple_repeat 1 22 0 1 900 23 0 0 0 chr4 41289503 41289526 -114340594 + AT_rich Low_complexity Low_complexity 1 23 0 1 900 462 257 12 60 chr4 41289527 41289668 -114340452 - B1F SINE Alu -6 143 6 1 900 1482 69 26 0 chr4 41289694 41289883 -114340237 - B2_Mm2 SINE B2 -1 194 1 1 900 270 291 11 34 chr4 41290252 41290341 -114339779 + RSINE1 SINE B4 64 150 -15 1 900 632 238 83 7 chr4 41290386 41290530 -114339590 + Ricksha_c DNA MuDR 659 813 -1235 1 900 403 259 25 41 chr4 41290755 41290876 -114339244 + ID_B1 SINE B4 100 218 -6 1 900 834 37 0 0 chr4 41290885 41290993 -114339127 + B1_Mm SINE Alu 34 141 -6 1 900 285 51 0 0 chr4 41290995 41291034 -114339086 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 900 1007 120 0 0 chr4 41291338 41291488 -114338632 + B2_Mm2 SINE B2 2 151 -44 1 900 374 72 0 39 chr4 41291518 41291585 -114338535 + B2_Mm2 SINE B2 47 109 -107 1 900 25 51 0 0 chr4 41291597 41291636 -114338484 + AT_rich Low_complexity Low_complexity 1 39 0 1 900 294 290 85 98 chr4 41291639 41291792 -114338328 + B4A SINE B4 2 152 -140 1 900 222 37 0 0 chr4 41291840 41291867 -114338253 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 900 230 237 13 0 chr4 41292209 41292285 -114337835 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 900 1115 88 0 7 chr4 41292293 41292442 -114337678 - B1_Mus1 SINE Alu 0 148 1 1 900 1362 66 38 6 chr4 41292448 41292631 -114337489 - B2_Mm2 SINE B2 -5 190 2 1 900 658 232 82 39 chr4 41292651 41292857 -114337263 - B3 SINE B2 -1 215 1 1 900 448 193 34 0 chr4 41292893 41292981 -114337139 - U6 snRNA snRNA -9 98 8 1 900 24 53 0 0 chr4 41292998 41293036 -114337084 + AT_rich Low_complexity Low_complexity 1 38 0 1 900 3089 136 109 19 chr4 41293049 41293688 -114336432 - RMER6A LTR ERVK 0 756 60 1 900 342 169 70 0 chr4 41293696 41293767 -114336353 - B3A SINE B2 -121 77 2 1 900 316 189 37 86 chr4 41293770 41293851 -114336269 - PB1D7 SINE Alu -1 119 43 1 900 290 302 76 25 chr4 41293856 41293873 -114336247 - ID_B1 SINE B4 0 224 100 1 900 573 206 0 0 chr4 41293873 41293975 -114336145 - B1_Mur1 SINE Alu -29 120 19 1 900 252 77 0 0 chr4 41294211 41294250 -114335870 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 900 916 64 0 0 chr4 41294250 41294375 -114335745 - B1_Mus1 SINE Alu -23 125 1 1 900 401 231 78 106 chr4 41294375 41294441 -114335679 - MT2B LTR ERVL -450 151 91 1 900 382 261 74 50 chr4 41294485 41294606 -114335514 - ID_B1 SINE B4 -1 223 100 1 900 493 288 28 14 chr4 41294674 41294815 -114335305 + B1_Mur1 SINE Alu 1 143 -6 1 900 351 0 0 0 chr4 41294824 41294863 -114335257 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 900 393 39 0 0 chr4 41294920 41294971 -114335149 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 900 180 0 0 0 chr4 41295088 41295108 -114335012 + (C)n Simple_repeat Simple_repeat 1 20 0 1 900 23 33 0 0 chr4 41295525 41295555 -114334565 + AT_rich Low_complexity Low_complexity 1 30 0 1 900 621 256 82 39 chr4 41297213 41297420 -114332700 + B3 SINE B2 1 216 0 1 900 354 241 0 119 chr4 41297464 41297481 -114332639 - ID_B1 SINE B4 0 224 92 1 900 688 185 8 30 chr4 41297481 41297615 -114332505 - B1_Mur3 SINE Alu -8 141 11 1 900 563 181 292 6 chr4 41298049 41298210 -114331910 - B3 SINE B2 -6 210 4 1 900 234 0 0 0 chr4 41298211 41298237 -114331883 + (TCCCC)n Simple_repeat Simple_repeat 2 27 0 1 900 1081 64 50 0 chr4 41298386 41298526 -114331594 - B1_Mus2 SINE Alu 0 147 1 1 900 548 68 0 0 chr4 41298552 41298626 -114331494 - B2_Mm2 SINE B2 -121 74 1 1 900 790 247 51 6 chr4 41298648 41298823 -114331297 - B3 SINE B2 -2 214 32 1 900 195 108 0 0 chr4 41298827 41298847 -114331273 + (T)n Simple_repeat Simple_repeat 1 20 0 1 900 1248 41 0 0 chr4 41298847 41298994 -114331126 - B1_Mm SINE Alu 0 147 1 1 900 195 108 0 0 chr4 41298994 41299010 -114331110 + (T)n Simple_repeat Simple_repeat 1 16 0 1 900 585 222 217 43 chr4 41299018 41299202 -114330918 - B3 SINE B2 0 216 1 1 900 297 58 0 37 chr4 41299289 41299343 -114330777 - B1_Mur4 SINE Alu 0 150 99 1 900 1071 83 45 0 chr4 41299445 41299601 -114330519 - B2_Mm2 SINE B2 -4 191 29 1 900 758 171 7 52 chr4 41299632 41299786 -114330334 - B1_Mus2 SINE Alu 0 147 1 1 900 622 206 16 0 chr4 41299861 41299987 -114330133 - B3 SINE B2 -88 128 1 1 900 214 157 382 0 chr4 41300402 41300491 -114329629 - B1F2 SINE Alu -26 123 1 1 900 262 254 107 66 chr4 41300624 41300746 -114329374 - L1M5 LINE L1 -743 5497 5371 1 900 346 170 60 49 chr4 41300839 41300937 -114329183 - PB1D10 SINE Alu -6 114 1 1 900 201 74 0 0 chr4 41300960 41300987 -114329133 + (T)n Simple_repeat Simple_repeat 1 27 0 1 900 1258 34 0 0 chr4 41300990 41301137 -114328983 - B1_Mus2 SINE Alu 0 147 1 1 900 502 225 150 0 chr4 41301273 41301393 -114328727 - RSINE1 SINE B4 -27 138 1 1 900 229 351 88 22 chr4 41301390 41301527 -114328593 - B1F1 SINE Alu -2 147 2 1 900 288 250 31 0 chr4 41301642 41301706 -114328414 - ID4_ SINE ID -9 74 9 1 900 268 208 0 0 chr4 41301767 41301815 -114328305 + ID_B1 SINE B4 177 224 0 1 900 1409 75 27 0 chr4 41301872 41302060 -114328060 - B2_Mm1a SINE B2 0 193 1 1 900 1054 178 92 110 chr4 41302172 41302357 -114327763 + ORR1D1 LTR MaLR 6 209 -165 1 900 1207 41 0 0 chr4 41302357 41302503 -114327617 + B1_Mm SINE Alu 2 147 0 1 900 1054 178 92 110 chr4 41302503 41302561 -114327559 + ORR1D1 LTR MaLR 210 243 -131 1 900 531 45 0 0 chr4 41302561 41302627 -114327493 + (CCTG)n Simple_repeat Simple_repeat 4 69 0 1 900 1054 178 92 110 chr4 41302627 41302717 -114327403 + ORR1D1 LTR MaLR 244 334 -40 1 900 541 240 16 0 chr4 41302744 41302865 -114327255 - B3A SINE B2 -75 123 1 1 900 572 203 56 56 chr4 41302886 41303048 -114327072 - B3 SINE B2 0 216 55 1 900 715 153 279 12 chr4 41303089 41303254 -114326866 - B3 SINE B2 -7 209 1 1 900 952 245 5 19 chr4 41303262 41303478 -114326642 - ID_B1 SINE B4 -9 215 3 1 900 553 212 16 33 chr4 41303641 41303763 -114326357 - B3A SINE B2 -75 123 4 1 900 423 328 33 75 chr4 41303840 41304054 -114326066 + B4 SINE B4 88 292 0 1 900 490 290 147 25 chr4 41304247 41304533 -114325587 - MTEb LTR MaLR -15 364 44 1 900 758 153 35 7 chr4 41304723 41304868 -114325252 - B1_Mur4 SINE Alu 0 150 2 1 900 401 250 8 91 chr4 41304756 41304888 -114325232 - MT2B LTR ERVL -336 265 145 1 900 316 260 96 0 chr4 41304882 41304986 -114325134 - RMER15 LTR ERVL -157 418 305 1 900 259 224 0 152 chr4 41305100 41305179 -114324941 - ID SINE ID -156 68 2 1 900 712 249 57 11 chr4 41305193 41305368 -114324752 + ID_B1 SINE B4 8 190 -34 1 900 337 269 123 45 chr4 41305528 41305707 -114324413 + B3A SINE B2 2 194 -4 1 900 252 315 0 82 chr4 41305895 41305992 -114324128 - B1F SINE Alu -60 89 1 1 900 240 32 0 0 chr4 41305996 41306007 -114324113 + (TA)n Simple_repeat Simple_repeat 2 12 0 1 900 528 93 0 0 chr4 41306007 41306082 -114324038 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 900 240 32 0 0 chr4 41306082 41306101 -114324019 + (TA)n Simple_repeat Simple_repeat 1 19 0 1 900 1427 197 142 21 chr4 41306160 41306534 -114323586 - MTD LTR MaLR 0 419 1 1 900 289 211 224 17 chr4 41306536 41306652 -114323468 + B1F2 SINE Alu 5 144 -5 1 900 452 222 167 0 chr4 41306664 41306772 -114323348 + B3A SINE B2 3 128 -70 1 900 461 215 88 44 chr4 41307052 41307188 -114322932 - B1F1 SINE Alu -2 147 6 1 900 807 149 8 0 chr4 41307231 41307365 -114322755 - B1_Mur3 SINE Alu 0 149 15 1 900 228 35 0 0 chr4 41307383 41307412 -114322708 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 1 900 880 189 24 24 chr4 41307428 41307639 -114322481 - B3 SINE B2 0 216 6 1 900 322 182 65 0 chr4 41307643 41307720 -114322400 - B3 SINE B2 -5 211 130 1 900 452 266 37 0 chr4 41307707 41307816 -114322304 - PB1D9 SINE Alu -7 113 1 1 900 344 214 152 33 chr4 41307854 41307946 -114322174 + B1_Mur3 SINE Alu 3 105 -44 1 900 292 247 27 0 chr4 41308021 41308094 -114322026 - RSINE1 SINE B4 0 165 91 1 900 493 92 35 0 chr4 41308085 41308172 -114321948 - B2_Mm1a SINE B2 -4 189 100 1 900 937 125 47 74 chr4 41308373 41308502 -114321618 + B2_Mm2 SINE B2 2 133 -62 1 900 1177 54 0 20 chr4 41308502 41308652 -114321468 - B1_Mus2 SINE Alu 0 147 1 1 900 937 125 47 74 chr4 41308652 41308712 -114321408 + B2_Mm2 SINE B2 134 186 -9 1 900 24 0 0 0 chr4 41308751 41308775 -114321345 + AT_rich Low_complexity Low_complexity 1 24 0 1 900 955 106 161 0 chr4 41308775 41308936 -114321184 - B2_Mm2 SINE B2 -8 187 1 1 900 956 103 0 0 chr4 41308948 41309094 -114321026 - B2_Mm1a SINE B2 -7 186 41 1 900 33 0 0 0 chr4 41309104 41309137 -114320983 + AT_rich Low_complexity Low_complexity 1 33 0 1 900 244 279 174 0 chr4 41309147 41309233 -114320887 - PB1D9 SINE Alu -19 101 1 1 900 225 241 126 46 chr4 41309730 41309817 -114320303 - PB1D7 SINE Alu -7 113 20 1 900 687 192 6 70 chr4 41309860 41310017 -114320103 - B1_Mus2 SINE Alu 0 147 1 1 900 1150 56 7 0 chr4 41310093 41310237 -114319883 + B1_Mus2 SINE Alu 2 146 -1 1 900 586 206 58 22 chr4 41310314 41310453 -114319667 + B1_Mur3 SINE Alu 6 149 0 1 900 297 219 16 0 chr4 41310613 41310677 -114319443 + ID4 SINE ID 10 74 -9 1 900 222 196 59 0 chr4 41310779 41310830 -114319290 - B1_Mm SINE Alu -57 90 37 1 900 572 257 43 27 chr4 41310933 41311121 -114318999 + B3A SINE B2 4 194 -4 1 900 261 254 182 32 chr4 41311135 41311261 -114318859 + B1F2 SINE Alu 5 149 0 1 900 752 103 9 0 chr4 41311337 41311453 -114318667 + (TA)n Simple_repeat Simple_repeat 1 117 0 1 900 1172 95 0 0 chr4 41311454 41311623 -114318497 - B2_Mm2 SINE B2 -26 169 1 1 900 1707 31 0 0 chr4 41312377 41312569 -114317551 - B2_Mm1t SINE B2 -1 192 1 1 900 666 264 96 0 chr4 41312789 41312986 -114317134 + ID_B1 SINE B4 2 217 -7 1 900 420 227 17 68 chr4 41313002 41313016 -114317104 + MT2B LTR ERVL 152 159 -442 1 900 648 175 18 0 chr4 41313016 41313130 -114316990 + B1_Mus2 SINE Alu 2 117 -30 1 900 268 262 58 10 chr4 41313434 41313538 -114316582 - B1_Mur4 SINE Alu 0 150 42 1 900 409 271 37 8 chr4 41313589 41313723 -114316397 + RSINE1 SINE B4 16 153 -12 1 900 243 0 0 0 chr4 41314414 41314441 -114315679 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 900 1257 85 28 6 chr4 41314489 41314666 -114315454 + B2_Mm2 SINE B2 1 181 -14 1 900 995 63 0 34 chr4 41314893 41315041 -114315079 - B1_Mus1 SINE Alu 0 148 6 1 900 357 282 116 6 chr4 41315099 41315263 -114314857 + B3 SINE B2 1 182 -34 1 900 689 212 15 0 chr4 41315670 41315802 -114314318 - B1_Mur1 SINE Alu -10 139 6 1 900 26 30 0 0 chr4 41315805 41315838 -114314282 + AT_rich Low_complexity Low_complexity 1 33 0 1 900 267 196 0 35 chr4 41315860 41315918 -114314202 - B2_Mm2 SINE B2 -94 101 46 1 900 1061 88 138 0 chr4 41315984 41316143 -114313977 - B2_Mm2 SINE B2 -14 181 1 1 900 403 237 152 41 chr4 41316166 41316265 -114313855 - RSINE1 SINE B4 -2 163 46 1 900 216 0 0 0 chr4 41316265 41316289 -114313831 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 900 1133 44 0 0 chr4 41316289 41316425 -114313695 - B1_Mm SINE Alu -10 137 2 1 900 403 237 152 41 chr4 41316425 41316469 -114313651 - RSINE1 SINE B4 -120 45 4 1 900 195 100 0 0 chr4 41316485 41316515 -114313605 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 1 900 480 319 23 109 chr4 41316544 41316754 -114313366 - B4A SINE B4 -14 278 86 1 900 1131 55 0 33 chr4 41316754 41316905 -114313215 - B1_Mus2 SINE Alu 0 147 2 1 900 480 319 23 109 chr4 41316905 41316997 -114313123 - B4A SINE B4 -207 85 2 1 900 225 250 225 43 chr4 41317142 41317280 -114312840 - Lx8 LINE L1 -41 7432 7270 1 900 243 114 0 0 chr4 41317298 41317342 -114312778 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 900 2018 86 60 56 chr4 41317342 41317622 -114312498 - L1_Mus3 LINE L1 -13 6625 6327 1 900 185 0 0 39 chr4 41317622 41317648 -114312472 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 900 1133 82 0 0 chr4 41317653 41317800 -114312320 - B1_Mus1 SINE Alu 0 148 2 1 900 2018 86 60 56 chr4 41317800 41317832 -114312288 - L1_Mus3 LINE L1 -312 6326 6306 1 900 549 233 8 57 chr4 41317835 41317958 -114312162 - Lx8 LINE L1 -230 7243 7127 1 900 329 266 72 18 chr4 41317991 41318102 -114312018 + PB1D10 SINE Alu 1 117 0 1 900 24 0 0 0 chr4 41318116 41318140 -114311980 + AT_rich Low_complexity Low_complexity 1 24 0 1 900 261 57 0 0 chr4 41318166 41318201 -114311919 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 900 827 161 35 0 chr4 41318214 41318357 -114311763 - B1_Mur4 SINE Alu 0 150 3 1 900 1048 63 0 0 chr4 41318410 41318552 -114311568 + B1_Mus1 SINE Alu 6 147 -1 1 900 459 118 0 0 chr4 41319633 41319718 -114310402 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 1 900 1137 90 65 6 chr4 41320067 41320235 -114309885 - B2_Mm2 SINE B2 -15 180 3 1 900 740 127 151 0 chr4 41320242 41320368 -114309752 - B1_Mur4 SINE Alu -1 149 5 1 900 680 189 7 0 chr4 41320835 41320983 -114309137 + GA-rich Low_complexity Low_complexity 2 150 0 1 900 728 275 99 31 chr4 41321226 41321609 -114308511 - L1M4 LINE L1 -373 5811 5403 1 900 307 284 15 0 chr4 41321788 41321855 -114308265 + ID4_ SINE ID 2 69 -14 1 900 370 303 18 0 chr4 41321938 41322047 -114308073 + PB1 SINE Alu 2 112 -15 1 900 520 268 132 46 chr4 41322048 41322373 -114307747 - ORR1E LTR MaLR 0 359 7 1 900 285 227 0 83 chr4 41322472 41322544 -114307576 - PB1D9 SINE Alu -22 98 33 1 900 359 328 53 0 chr4 41322552 41322683 -114307437 - ID_B1 SINE B4 -6 218 81 1 900 473 202 39 0 chr4 41322722 41322826 -114307294 + B1_Mur2 SINE Alu 22 129 -20 1 900 414 305 10 70 chr4 41322935 41323070 -114307050 - B3 SINE B2 0 216 94 1 900 505 125 10 24 chr4 41323070 41323173 -114306947 + B1_Mus2 SINE Alu 2 100 -48 1 900 380 159 14 14 chr4 41323151 41323221 -114306899 - B3A SINE B2 -127 71 2 1 900 1183 48 14 0 chr4 41323455 41323600 -114306520 - B1_Mm SINE Alu 0 147 1 1 900 658 280 152 18 chr4 41323602 41323934 -114306186 + MTE2b LTR MaLR 1 342 -37 1 900 1263 20 0 20 chr4 41323934 41324084 -114306036 - B1_Mus2 SINE Alu 0 147 1 1 900 619 291 88 80 chr4 41324084 41324125 -114305995 + MTE2b LTR MaLR 343 377 -2 1 900 311 224 47 0 chr4 41324548 41324633 -114305487 - PB1D10 SINE Alu -1 116 28 1 900 1202 54 0 0 chr4 41324956 41325103 -114305017 - B1_Mus2 SINE Alu 0 147 1 1 900 219 182 89 18 chr4 41325375 41325431 -114304689 + BC1_Mm scRNA scRNA 16 75 -77 1 900 334 211 196 21 chr4 41327273 41327370 -114302750 - PB1D10 SINE Alu -3 114 1 1 900 407 134 248 16 chr4 41327860 41327981 -114302139 - B2_Mm2 SINE B2 -1 194 46 1 900 255 194 87 58 chr4 41328461 41328565 -114301555 - B1_Mur3 SINE Alu -1 148 42 1 900 297 75 0 0 chr4 41328978 41329018 -114301102 + (T)n Simple_repeat Simple_repeat 1 40 0 1 900 1248 48 0 0 chr4 41329018 41329165 -114300955 - B1_Mus2 SINE Alu 0 147 1 1 900 2741 85 0 22 chr4 41329168 41329575 -114300545 - MTB_Mm LTR MaLR -8 399 2 1 900 22 0 0 0 chr4 41329782 41329804 -114300316 + AT_rich Low_complexity Low_complexity 1 22 0 1 900 310 261 16 73 chr4 41329804 41329928 -114300192 - RSINE1 SINE B4 -43 122 6 1 900 230 200 36 0 chr4 41329931 41329986 -114300134 + AluF_3 SINE Alu 155 211 -100 1 900 227 228 18 0 chr4 41330039 41330096 -114300024 - PB1D9 SINE Alu 0 120 63 1 900 253 172 155 0 chr4 41330511 41330569 -114299551 - B1F1 SINE Alu -9 140 74 1 900 250 252 176 29 chr4 41330657 41330759 -114299361 - ID_B1 SINE B4 -106 118 2 1 900 214 194 0 0 chr4 41330770 41330806 -114299314 - PB1D7 SINE Alu -67 53 18 1 900 348 211 122 0 chr4 41330887 41330977 -114299143 - PB1D10 SINE Alu 0 117 17 1 900 297 246 279 0 chr4 41330913 41331035 -114299085 - ID_B1 SINE B4 -60 164 9 1 900 21 71 0 0 chr4 41331038 41331080 -114299040 + AT_rich Low_complexity Low_complexity 1 42 0 1 900 521 252 101 0 chr4 41331091 41331230 -114298890 - RSINE1 SINE B4 -10 155 3 1 900 606 197 170 22 chr4 41331247 41331429 -114298691 - B3 SINE B2 -7 209 1 1 900 234 276 26 13 chr4 41331835 41331903 -114298217 - PB1D10 SINE Alu 0 117 48 1 900 1376 81 37 5 chr4 41331903 41332090 -114298030 - B2_Mm2 SINE B2 -1 194 2 1 900 730 253 86 20 chr4 41332295 41332493 -114297627 + B3 SINE B2 2 212 -4 1 900 303 258 43 11 chr4 41332527 41332621 -114297499 + B1_Mur2 SINE Alu 33 129 -20 1 900 841 248 28 37 chr4 41332728 41332942 -114297178 - B3 SINE B2 -2 214 3 1 900 308 224 207 0 chr4 41334657 41334773 -114295347 - ID_B1 SINE B4 -4 220 81 1 900 183 114 0 0 chr4 41336975 41337010 -114293110 + (T)n Simple_repeat Simple_repeat 1 35 0 1 900 210 266 154 46 chr4 41337394 41337524 -114292596 - B1F SINE Alu -5 144 1 1 900 344 233 231 41 chr4 41337771 41337892 -114292228 + B1_Mur2 SINE Alu 1 144 -5 1 900 233 247 68 0 chr4 41337973 41338046 -114292074 + B4A SINE B4 201 278 -14 1 900 1152 68 0 0 chr4 41338457 41338603 -114291517 + B1_Mm SINE Alu 2 147 0 1 900 202 61 0 57 chr4 41338605 41338640 -114291480 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 900 794 230 66 36 chr4 41339359 41339559 -114290561 - B3 SINE B2 0 216 14 1 900 331 316 72 14 chr4 41343201 41343339 -114286781 - MER20 DNA MER1_type -14 205 60 1 900 863 194 36 46 chr4 41343350 41343545 -114286575 + B3 SINE B2 1 193 -23 1 900 234 0 0 0 chr4 41343546 41343572 -114286548 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 900 206 72 70 23 chr4 41343572 41343615 -114286505 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 1 900 488 222 60 0 chr4 41343741 41343858 -114286262 + RSINE1 SINE B4 7 130 -35 1 900 1095 83 14 0 chr4 41343919 41344064 -114286056 - B1_Mus1 SINE Alu 0 148 2 1 900 396 0 0 0 chr4 41344299 41344343 -114285777 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 900 263 167 0 57 chr4 41344482 41344541 -114285579 - B1_Mm SINE Alu -51 96 41 1 900 776 206 79 0 chr4 41344808 41344973 -114285147 + B3 SINE B2 3 180 -36 1 900 320 200 0 54 chr4 41345062 41345136 -114284984 + B4A SINE B4 1 70 -222 1 900 270 273 19 39 chr4 41345136 41345165 -114284955 + B3A SINE B2 1 101 -97 1 900 347 303 0 10 chr4 41345241 41345341 -114284779 + PB1D10 SINE Alu 2 100 -17 1 900 1123 49 21 0 chr4 41346290 41346434 -114283686 - B1_Mus1 SINE Alu 0 148 2 1 900 260 281 41 82 chr4 41346655 41346752 -114283368 - B1F SINE Alu -47 102 10 1 900 468 221 21 10 chr4 41346759 41346855 -114283265 - PB1 SINE Alu -7 120 24 1 900 608 268 190 14 chr4 41346899 41347183 -114282937 + MTD LTR MaLR 1 334 -85 1 900 892 158 174 5 chr4 41347618 41347802 -114282318 - B3 SINE B2 0 216 2 1 900 394 269 108 60 chr4 41347812 41347966 -114282154 + B3 SINE B2 37 197 -1 1 900 1466 225 62 57 chr4 41348385 41348790 -114281330 + MTD LTR MaLR 5 411 -8 1 900 859 161 33 12 chr4 41348803 41349011 -114281109 - RMER10B LTR ERVL 0 398 8 1 900 292 320 98 98 chr4 41349043 41349206 -114280914 - RSINE1 SINE B4 0 165 3 1 900 318 216 34 0 chr4 41349322 41349410 -114280710 - MER33 DNA MER1_type -178 146 56 1 900 661 208 25 0 chr4 41349589 41349709 -114280411 + B3 SINE B2 78 200 -16 1 900 207 0 0 0 chr4 41349709 41349732 -114280388 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 900 763 231 12 24 chr4 41350082 41350246 -114279874 + RSINE1 SINE B4 2 163 -2 1 900 326 231 237 8 chr4 41350330 41350461 -114279659 - RSINE1 SINE B4 -4 161 1 1 900 324 162 0 0 chr4 41352594 41352652 -114277468 + T-rich Low_complexity Low_complexity 17 74 0 1 900 1218 54 0 0 chr4 41352652 41352799 -114277321 - B1_Mus2 SINE Alu 0 147 1 1 900 324 162 0 0 chr4 41352799 41352814 -114277306 + T-rich Low_complexity Low_complexity 2 16 0 1 900 496 121 264 41 chr4 41352837 41352958 -114277162 + B1_Mur3 SINE Alu 2 149 0 1 900 598 266 112 34 chr4 41353001 41353207 -114276913 + ID_B1 SINE B4 2 223 -1 1 900 559 167 19 19 chr4 41353213 41353317 -114276803 + PB1D9 SINE Alu 17 120 0 1 900 1065 265 77 0 chr4 41353368 41353693 -114276427 + MTE-int LTR MaLR 116 465 -1115 1 900 586 307 133 28 chr4 41353829 41354077 -114276043 + MTE-int LTR MaLR 1071 1344 -236 1 900 538 203 122 0 chr4 41354098 41354221 -114275899 - B3 SINE B2 -11 205 68 1 900 441 292 93 22 chr4 41354236 41354403 -114275717 + MTE-int LTR MaLR 1349 1528 -52 1 900 688 244 54 22 chr4 41354403 41354635 -114275485 + ORR1E LTR MaLR 2 235 -135 1 900 388 260 83 26 chr4 41354717 41354786 -114275334 - ID_B1 SINE B4 -13 279 121 1 900 628 130 30 0 chr4 41354786 41354886 -114275234 - B1_Mur3 SINE Alu -33 116 14 1 900 388 260 83 26 chr4 41354886 41354905 -114275215 - ID_B1 SINE B4 -13 120 72 1 900 1200 49 0 0 chr4 41355259 41355401 -114274719 - B1_Mus1 SINE Alu -6 142 1 1 900 541 215 85 0 chr4 41355440 41355570 -114274550 + B1_Mm SINE Alu 7 147 0 1 900 341 235 0 120 chr4 41355623 41355715 -114274405 + ID_B1 SINE B4 143 223 -1 1 900 259 207 35 0 chr4 41355784 41355842 -114274278 + ID4 SINE ID 15 74 -9 1 900 1270 34 0 0 chr4 41356233 41356380 -114273740 + B1_Mus2 SINE Alu 1 147 0 1 900 207 0 0 0 chr4 41356380 41356403 -114273717 + (A)n Simple_repeat Simple_repeat 1 23 0 1 900 548 65 0 13 chr4 41356677 41356755 -114273365 + (GGA)n Simple_repeat Simple_repeat 2 78 0 1 900 476 250 0 20 chr4 41357417 41357519 -114272601 - PB1D10 SINE Alu -2 115 16 1 900 520 190 20 0 chr4 41357796 41357896 -114272224 + B1_Mur1 SINE Alu 48 149 0 1 900 1417 65 43 0 chr4 41358032 41358218 -114271902 + B2_Mm2 SINE B2 2 195 0 1 900 962 213 34 10 chr4 41358352 41358556 -114271564 + B3 SINE B2 1 209 -7 1 900 603 221 33 0 chr4 41358564 41358686 -114271434 + B3A SINE B2 10 135 -63 1 900 32 0 0 23 chr4 41358689 41358700 -114271420 + AT_rich Low_complexity Low_complexity 1 11 0 1 900 1432 45 17 22 chr4 41358700 41358880 -114271240 - B2_Mm2 SINE B2 -15 180 2 1 900 32 0 0 23 chr4 41358880 41358911 -114271209 + AT_rich Low_complexity Low_complexity 1 31 0 1 900 818 160 53 0 chr4 41359010 41359141 -114270979 + B1_Mus2 SINE Alu 1 138 -9 1 900 208 287 21 21 chr4 41359175 41359271 -114270849 + CT-rich Low_complexity Low_complexity 4 99 0 1 900 837 99 0 0 chr4 41359315 41359436 -114270684 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 1 900 405 291 0 0 chr4 41359477 41359563 -114270557 - RSINE1 SINE B4 -77 88 3 1 900 533 272 47 31 chr4 41359604 41359733 -114270387 - B1F SINE Alu -13 136 6 1 900 275 241 0 0 chr4 41359685 41359739 -114270381 - B4A SINE B4 -154 138 85 1 900 1381 77 17 0 chr4 41359780 41359961 -114270159 + B2_Mm2 SINE B2 1 184 -11 1 900 186 209 0 0 chr4 41359961 41360004 -114270116 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 1 900 292 91 0 68 chr4 41360151 41360210 -114269910 + B3 SINE B2 162 216 0 1 900 349 253 0 0 chr4 41360424 41360503 -114269617 + ID4_ SINE ID 1 79 -4 1 900 356 282 76 0 chr4 41360570 41360701 -114269419 + B1F1 SINE Alu 1 141 -8 1 900 23 33 0 0 chr4 41361087 41361117 -114269003 + AT_rich Low_complexity Low_complexity 1 30 0 1 900 268 202 31 4 chr4 41361326 41361390 -114268730 + ID SINE ID 10 71 -221 1 900 300 111 0 0 chr4 41361390 41361435 -114268685 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 900 361 280 24 63 chr4 41361512 41361638 -114268482 - B1F2 SINE Alu 0 149 29 1 900 3219 58 5 2 chr4 41362261 41362656 -114267464 - MTA_Mm LTR MaLR 0 396 1 1 900 701 274 68 19 chr4 41363077 41363282 -114266838 - ID_B1 SINE B4 -8 216 2 1 900 237 135 289 0 chr4 41363303 41363355 -114266765 - L1MC2 LINE L1 -26 6318 6252 1 900 645 247 6 35 chr4 41364386 41364558 -114265562 + ID_B1 SINE B4 3 169 -55 1 900 324 0 0 0 chr4 41364590 41364626 -114265494 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 900 420 289 210 4 chr4 41364655 41364888 -114265232 - B4A SINE B4 -11 281 1 1 900 1232 54 0 0 chr4 41365223 41365370 -114264750 + B1_Mus2 SINE Alu 1 147 0 1 900 210 71 0 0 chr4 41365378 41365406 -114264714 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 900 341 257 0 29 chr4 41365406 41365510 -114264610 - L1MB8 LINE L1 -74 6104 6004 1 900 263 191 63 0 chr4 41365734 41365797 -114264323 - L1_Rod LINE L1 -10 5837 5771 1 900 283 130 0 0 chr4 41365908 41365954 -114264166 + PB1D9 SINE Alu 19 64 -56 1 900 198 71 0 0 chr4 41365960 41365988 -114264132 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 1 900 1112 74 31 0 chr4 41366012 41366174 -114263946 - B2_Mm2 SINE B2 -14 181 15 1 900 417 181 36 0 chr4 41366178 41366261 -114263859 + B1_Mur2 SINE Alu 54 139 -10 1 900 658 259 0 7 chr4 41366511 41366647 -114263473 + B1_Mur1 SINE Alu 2 136 -13 1 900 842 178 13 27 chr4 41366752 41366902 -114263218 + B1_Mur1 SINE Alu 2 149 0 1 900 507 218 20 139 chr4 41366940 41366963 -114263157 - B2_Mm2 SINE B2 -16 179 158 1 900 1053 56 27 34 chr4 41366963 41367110 -114263010 - B1_Mus2 SINE Alu -1 146 1 1 900 780 218 20 139 chr4 41367110 41367288 -114262832 - B3A SINE B2 -26 172 2 1 900 288 307 78 28 chr4 41367307 41367448 -114262672 + B1F1 SINE Alu 1 148 -1 1 900 321 294 0 39 chr4 41367501 41367633 -114262487 + ID4_ SINE ID 8 129 -23 1 900 702 295 61 30 chr4 41368647 41368709 -114261411 - B4A SINE B4 -6 286 229 1 900 1344 105 16 0 chr4 41368709 41368900 -114261220 - B2_Mm2 SINE B2 0 195 2 1 900 702 295 61 30 chr4 41368900 41369099 -114261021 - B4A SINE B4 -64 228 17 1 900 545 252 61 0 chr4 41369359 41369490 -114260630 + B1F SINE Alu 3 141 -8 1 900 599 241 49 7 chr4 41369525 41369667 -114260453 + B1F2 SINE Alu 2 149 0 1 900 592 219 46 15 chr4 41369689 41369819 -114260301 + B1_Mur1 SINE Alu 13 146 -3 1 900 710 201 14 27 chr4 41369822 41369970 -114260150 + B1_Mur4 SINE Alu 1 146 -4 1 900 487 191 123 9 chr4 41370241 41370347 -114259773 + PB1D9 SINE Alu 1 118 -2 1 900 592 235 90 15 chr4 41370813 41370947 -114259173 - B1F SINE Alu -1 148 5 1 900 306 214 107 48 chr4 41370950 41371053 -114259067 - PB1D10 SINE Alu -8 109 1 1 900 315 173 24 12 chr4 41371157 41371239 -114258881 + GA-rich Low_complexity Low_complexity 2 84 0 1 900 222 37 0 0 chr4 41371260 41371287 -114258833 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 1 900 495 281 18 0 chr4 41371559 41371673 -114258447 - ID_B1 SINE B4 -108 116 1 1 900 752 252 185 12 chr4 41371819 41371996 -114258124 - B4 SINE B4 0 292 81 1 900 342 0 0 0 chr4 41371996 41372034 -114258086 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 900 752 252 185 12 chr4 41372034 41372105 -114258015 - B4 SINE B4 -212 80 2 1 900 442 60 15 0 chr4 41372991 41373058 -114257062 - L1_Mus2 LINE L1 0 6566 6499 1 900 27 29 0 0 chr4 41373632 41373666 -114256454 + AT_rich Low_complexity Low_complexity 1 34 0 1 900 308 127 0 35 chr4 41373781 41373838 -114256282 - B2_Mm2 SINE B2 -94 101 47 1 900 1255 97 11 6 chr4 41373923 41374100 -114256020 - B2_Mm1t SINE B2 -14 179 2 1 900 437 157 77 10 chr4 41374177 41374276 -114255844 + B1_Mur4 SINE Alu 10 118 -32 1 900 474 225 37 98 chr4 41374236 41374399 -114255721 + B4 SINE B4 69 221 -71 1 900 940 47 47 0 chr4 41374275 41374404 -114255716 + B1_Mm SINE Alu 13 147 0 1 900 208 0 62 0 chr4 41374406 41374438 -114255682 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 900 297 39 39 19 chr4 41374512 41374564 -114255556 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 900 265 291 11 34 chr4 41376887 41376976 -114253144 - B3A SINE B2 -8 190 104 1 900 545 279 8 0 chr4 41377059 41377181 -114252939 - B1F SINE Alu -26 123 1 1 900 1044 190 47 33 chr4 41377204 41377416 -114252704 - B3 SINE B2 -1 215 1 1 900 414 0 0 0 chr4 41377540 41377586 -114252534 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 900 618 322 114 55 chr4 41377702 41377999 -114252121 + MLT1H LTR MaLR 57 378 -171 1 900 1335 118 61 9 chr4 41377999 41378213 -114251907 - URR1B DNA MER1_type 0 225 1 1 900 618 322 114 55 chr4 41378213 41378372 -114251748 + MLT1H LTR MaLR 379 539 -10 1 900 638 302 174 3 chr4 41378407 41378706 -114251414 - L1MC1 LINE L1 -19 6314 5965 1 900 560 226 8 16 chr4 41378723 41378849 -114251271 - B1_Mur2 SINE Alu -11 138 14 1 900 1626 210 60 10 chr4 41378849 41379263 -114250857 - L1MC1 LINE L1 -368 5965 5531 1 900 279 213 173 0 chr4 41379747 41379822 -114250298 + PB1D7 SINE Alu 20 107 -13 1 900 225 208 0 70 chr4 41379846 41379903 -114250217 + B4 SINE B4 1 53 -239 1 900 385 110 14 14 chr4 41380028 41380102 -114250018 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 900 342 0 0 0 chr4 41380102 41380140 -114249980 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 900 256 288 75 0 chr4 41380228 41380308 -114249812 + PB1D7 SINE Alu 10 95 -25 1 900 669 301 10 35 chr4 41380425 41380628 -114249492 + ID_B1 SINE B4 1 198 -26 1 900 274 342 25 17 chr4 41380522 41380641 -114249479 + B1_Mus1 SINE Alu 11 130 -18 1 900 1194 61 0 0 chr4 41381149 41381296 -114248824 - B1_Mus1 SINE Alu 0 148 2 1 900 226 224 0 0 chr4 41381588 41381646 -114248474 + ID4_ SINE ID 3 60 -23 1 900 293 275 138 53 chr4 41381646 41381834 -114248286 + B3 SINE B2 5 208 -8 1 900 787 164 52 7 chr4 41381949 41382084 -114248036 + B1_Mus2 SINE Alu 1 141 -6 1 900 916 224 5 64 chr4 41382667 41382886 -114247234 - B3 SINE B2 -10 206 1 1 900 455 229 0 0 chr4 41382925 41383008 -114247112 + B4A SINE B4 4 86 -206 1 900 782 182 7 21 chr4 41383017 41383157 -114246963 + B1_Mur4 SINE Alu 2 139 -11 1 900 779 206 202 22 chr4 41383157 41383385 -114246735 + Lx2B LINE L1 6712 6980 -20 1 900 456 152 294 8 chr4 41383408 41383534 -114246586 + B4A SINE B4 73 234 -58 1 900 869 50 0 55 chr4 41383671 41383799 -114246321 + L1_Mus1 LINE L1 6447 6567 0 1 900 475 199 16 124 chr4 41383990 41384159 -114245961 + B2_Mm2 SINE B2 35 192 -1 1 900 247 291 24 60 chr4 41384240 41384260 -114245860 - ID4 SINE ID -1 82 63 1 900 2199 110 31 6 chr4 41384260 41384581 -114245539 + ORR1A4 LTR MaLR 1 329 0 1 900 247 291 24 60 chr4 41384581 41384644 -114245476 - ID4 SINE ID -21 62 2 1 900 21 36 0 0 chr4 41385042 41385070 -114245050 + AT_rich Low_complexity Low_complexity 1 28 0 1 900 402 21 0 0 chr4 41385078 41385125 -114244995 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 900 815 10 0 0 chr4 41385139 41385240 -114244880 - B1_Mus2 SINE Alu 0 147 47 1 900 289 169 66 66 chr4 41385182 41385258 -114244862 - RLTR25B LTR ERVK -519 509 434 1 900 776 201 0 20 chr4 41385291 41385443 -114244677 - B1F2 SINE Alu 0 149 1 1 900 612 250 27 13 chr4 41385467 41385617 -114244503 - RSINE1 SINE B4 -5 160 9 1 900 297 220 99 10 chr4 41385791 41385892 -114244228 + MER53 DNA hAT 84 193 0 1 900 729 263 23 28 chr4 41386155 41386370 -114243750 + B3 SINE B2 3 216 0 1 900 579 242 128 128 chr4 41386420 41386841 -114243279 + RLTR23 LTR ERV1 10 430 0 1 900 988 108 139 0 chr4 41387126 41387292 -114242828 - B2_Mm2 SINE B2 -6 189 1 1 900 804 121 129 0 chr4 41387571 41387703 -114242417 + B1_Mur4 SINE Alu 2 150 0 1 900 461 237 154 101 chr4 41387744 41387932 -114242188 + B3A SINE B2 1 198 0 1 900 576 142 75 0 chr4 41387947 41388053 -114242067 - B1F2 SINE Alu -8 141 28 1 900 1263 75 26 26 chr4 41388063 41388254 -114241866 - B2_Mm2 SINE B2 -4 191 1 1 900 760 304 64 39 chr4 41388289 41388570 -114241550 + B4A SINE B4 5 292 0 1 900 21 0 0 0 chr4 41388595 41388616 -114241504 + AT_rich Low_complexity Low_complexity 1 21 0 1 900 1231 68 22 43 chr4 41388720 41388904 -114241216 + B2_Mm2 SINE B2 10 189 -6 1 900 296 226 0 61 chr4 41388976 41389042 -114241078 + PB1D9 SINE Alu 59 120 0 1 900 886 156 210 0 chr4 41389105 41389272 -114240848 + B3 SINE B2 1 202 -14 1 900 413 355 101 24 chr4 41389527 41389775 -114240345 - L1ME1 LINE L1 -59 6120 5854 1 900 213 381 78 21 chr4 41389794 41389936 -114240184 - MIR3 SINE MIR -58 150 1 1 900 212 231 0 170 chr4 41390244 41390338 -114239782 + B4 SINE B4 74 151 -141 1 900 385 192 116 44 chr4 41390261 41390365 -114239755 + B1_Mur2 SINE Alu 2 109 -8 1 900 578 115 21 0 chr4 41390375 41390471 -114239649 + (TTTC)n Simple_repeat Simple_repeat 2 99 0 1 900 602 190 17 33 chr4 41390477 41390597 -114239523 - PB1D9 SINE Alu -2 118 1 1 900 995 41 8 3 chr4 41390702 41390846 -114239274 + B1_Mus2 SINE Alu 1 148 -1 1 900 245 71 119 0 chr4 41390847 41390889 -114239231 + L1M3 LINE L1 4537 4583 -1557 1 900 882 251 29 5 chr4 41390951 41391159 -114238961 + ID_B1 SINE B4 11 223 -1 1 900 353 153 83 0 chr4 41391161 41391233 -114238887 + B1_Mus2 SINE Alu 70 147 0 1 900 227 196 0 19 chr4 41391256 41391308 -114238812 + G-rich Low_complexity Low_complexity 2 52 0 1 900 386 203 27 13 chr4 41391310 41391385 -114238735 + PB1D10 SINE Alu 34 109 -8 1 900 298 250 0 0 chr4 41391543 41391599 -114238521 + B4A SINE B4 88 143 -149 1 900 707 237 7 0 chr4 41391549 41391688 -114238432 + B1F1 SINE Alu 9 148 -1 1 900 222 37 0 0 chr4 41391875 41391902 -114238218 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1 900 308 281 28 37 chr4 41391913 41392020 -114238100 + L1ME1 LINE L1 5907 6012 -167 1 900 352 298 67 42 chr4 41392081 41392200 -114237920 + RSINE1 SINE B4 14 135 -30 1 900 405 0 0 0 chr4 41392203 41392248 -114237872 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 900 269 326 151 38 chr4 41392295 41392534 -114237586 + B4 SINE B4 12 277 -15 1 900 1347 200 82 73 chr4 41392534 41392960 -114237160 - RLTR23 LTR ERV1 0 430 1 1 900 660 333 30 21 chr4 41393011 41393443 -114236677 - MMERGLN-int LTR ERV1 -64 7714 7279 1 900 1962 332 83 55 chr4 41394620 41398847 -114231273 - MMERGLN-int LTR ERV1 -2050 5728 1073 1 900 1349 205 68 91 chr4 41398964 41399404 -114230716 - RLTR23 LTR ERV1 0 430 1 1 900 261 0 0 0 chr4 41399419 41399448 -114230672 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 900 705 207 64 0 chr4 41399478 41399618 -114230502 - B1_Mur2 SINE Alu 0 149 1 1 900 612 264 108 10 chr4 41399653 41399848 -114230272 - B3 SINE B2 -2 214 1 1 900 232 231 12 93 chr4 41399876 41399962 -114230158 - L1ME1 LINE L1 -194 5985 5907 1 900 315 196 18 0 chr4 41399993 41400049 -114230071 - B1F SINE Alu 0 149 93 1 900 650 156 133 0 chr4 41400094 41400222 -114229898 - B1_Mur2 SINE Alu -3 146 2 1 900 902 214 23 23 chr4 41400222 41400394 -114229726 + B3 SINE B2 39 210 -6 1 900 210 150 0 0 chr4 41400406 41400446 -114229674 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 900 2957 76 10 22 chr4 41400929 41401334 -114228786 + MTB LTR MaLR 1 400 0 1 900 2962 14 5 85 chr4 41401767 41402166 -114227954 + IAPLTR1_Mm LTR ERVK 1 367 0 1 900 7877 85 102 23 chr4 41402166 41403377 -114226743 + IAPEz-int LTR ERVK 8 1313 -5168 1 900 29015 22 7 2 chr4 41403375 41406634 -114223486 + IAPEz-int LTR ERVK 3209 6481 0 1 900 2962 14 5 85 chr4 41406634 41407033 -114223087 + IAPLTR1_Mm LTR ERVK 1 367 0 1 900 1205 43 0 0 chr4 41407312 41407451 -114222669 - B1_Mus1 SINE Alu -7 141 3 1 900 694 39 0 143 chr4 41407491 41407610 -114222510 + B1_Mm SINE Alu 46 147 0 1 900 216 0 0 0 chr4 41407612 41407636 -114222484 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 900 249 33 0 0 chr4 41407636 41407665 -114222455 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1 900 768 164 97 0 chr4 41408360 41408494 -114221626 + B1_Mus1 SINE Alu 2 148 0 1 900 324 220 64 91 chr4 41408597 41408631 -114221489 + MT2B LTR ERVL 132 162 -439 1 900 352 233 139 0 chr4 41408631 41408717 -114221403 + B1_Mur3 SINE Alu 1 98 -51 1 900 806 176 29 14 chr4 41408742 41408880 -114221240 - B1_Mur1 SINE Alu -8 141 2 1 900 1119 109 6 18 chr4 41409045 41409213 -114220907 + ORR1A2 LTR MaLR 162 327 0 1 900 381 293 16 41 chr4 41409213 41409331 -114220789 - MTE2b LTR MaLR -185 194 80 1 900 317 299 37 9 chr4 41409660 41409768 -114220352 + PB1D7 SINE Alu 5 115 -5 1 900 992 228 25 0 chr4 41409783 41409980 -114220140 + B3 SINE B2 1 202 -14 1 900 3062 63 5 15 chr4 41409980 41410384 -114219736 - MTB LTR MaLR 0 400 1 1 900 231 61 0 0 chr4 41410396 41410429 -114219691 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 1 900 366 357 8 53 chr4 41410440 41410573 -114219547 + B4 SINE B4 3 129 -163 1 900 245 283 0 0 chr4 41410656 41410709 -114219411 + RSINE1 SINE B4 84 136 -29 1 900 402 115 0 0 chr4 41410710 41410771 -114219349 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 900 359 265 20 20 chr4 41411071 41411171 -114218949 - MTE2b LTR MaLR -178 201 102 1 900 22 35 0 0 chr4 41411907 41411936 -114218184 + GC_rich Low_complexity Low_complexity 1 29 0 1 900 213 65 0 0 chr4 41412523 41412554 -114217566 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 900 571 246 42 7 chr4 41412555 41412698 -114217422 - B3A SINE B2 -24 174 27 1 900 774 228 5 34 chr4 41413096 41413300 -114216820 + B3A SINE B2 1 198 0 1 900 253 209 194 0 chr4 41413467 41413534 -114216586 + PB1D9 SINE Alu 10 89 -31 1 900 1685 160 135 6 chr4 41413902 41414229 -114215891 - MTC LTR MaLR -1 420 52 1 900 668 174 52 0 chr4 41414230 41414345 -114215775 + ETnERV2-int LTR ERVK 7070 7190 -216 1 900 310 196 0 0 chr4 41414733 41414789 -114215331 - MTC LTR MaLR -365 56 1 1 900 308 144 19 0 chr4 41414985 41415049 -114215071 + B3 SINE B2 68 132 -66 1 900 704 158 120 0 chr4 41415233 41415366 -114214754 + B1_Mur1 SINE Alu 1 149 0 1 900 236 272 41 52 chr4 41415499 41415596 -114214524 + B4A SINE B4 1 96 -196 1 900 195 129 0 0 chr4 41416146 41416177 -114213943 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 900 202 276 111 39 chr4 41416685 41416781 -114213339 + MIR SINE MIR 21 121 -147 1 900 440 280 6 101 chr4 41416784 41416943 -114213177 - ID_B1 SINE B4 0 224 81 1 900 412 223 128 0 chr4 41416996 41417090 -114213030 + B1_Mur2 SINE Alu 35 140 -9 1 900 373 206 250 0 chr4 41417142 41417234 -114212886 - PB1D10 SINE Alu -1 116 2 1 900 287 218 18 0 chr4 41418163 41418218 -114211902 + LTR33C LTR ERVL 6 61 -568 1 900 457 184 275 23 chr4 41418227 41418398 -114211722 - B3 SINE B2 -2 214 1 1 112 787 366 29 57 chr4 41418418 41418801 -114211319 + MLT2F LTR ERVL 178 549 -114 1 901 326 282 13 0 chr4 41418946 41419024 -114211096 + ID SINE ID 2 80 -144 1 901 1207 62 0 0 chr4 41419839 41419985 -114210135 - B1_Mm SINE Alu -1 146 1 1 901 23 0 0 0 chr4 41420012 41420035 -114210085 + AT_rich Low_complexity Low_complexity 1 23 0 1 901 749 144 32 0 chr4 41420054 41420179 -114209941 - B3 SINE B2 -86 130 2 1 901 369 309 125 30 chr4 41420367 41420496 -114209624 - L1ME4a LINE L1 -176 5948 5813 1 901 351 0 0 0 chr4 41420496 41420535 -114209585 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 901 369 309 125 30 chr4 41420535 41420605 -114209515 - L1ME4a LINE L1 -312 5812 5731 1 901 559 255 70 16 chr4 41420647 41420834 -114209286 - B3A SINE B2 0 198 2 1 901 410 273 34 0 chr4 41420914 41421002 -114209118 - ID_B1 SINE B4 -51 173 83 1 901 451 191 170 0 chr4 41421011 41421105 -114209015 - B1_Mur1 SINE Alu -35 114 5 1 901 1148 88 0 0 chr4 41421152 41421299 -114208821 - B1_Mus2 SINE Alu 0 147 1 1 901 252 333 0 0 chr4 41421378 41421441 -114208679 + tRNA-Ala-GCA tRNA tRNA 6 68 -7 1 901 232 164 29 15 chr4 41421442 41421510 -114208610 + A-rich Low_complexity Low_complexity 2 70 0 1 901 186 118 0 0 chr4 41421517 41421551 -114208569 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 1 901 587 237 0 0 chr4 41421695 41421809 -114208311 - PB1D7 SINE Alu -5 115 2 1 901 196 373 59 7 chr4 41421876 41422011 -114208109 + L2c LINE L2 3026 3167 -220 1 901 681 107 0 0 chr4 41422062 41422184 -114207936 + (TG)n Simple_repeat Simple_repeat 1 122 0 1 901 229 254 16 33 chr4 41422278 41422339 -114207781 - RSINE1 SINE B4 -104 61 2 1 901 206 208 18 36 chr4 41422348 41422403 -114207717 - L2b LINE L2 -2 3373 3320 1 901 229 210 48 0 chr4 41422367 41422429 -114207691 - MIR SINE MIR -13 249 185 1 901 408 173 73 12 chr4 41422429 41422511 -114207609 + PB1D9 SINE Alu 14 100 -20 1 901 210 297 107 25 chr4 41422511 41422550 -114207570 + B4 SINE B4 99 229 -63 1 901 995 150 28 112 chr4 41422587 41422872 -114207248 + RMER17C LTR ERVK 16 276 -134 1 901 1061 160 139 0 chr4 41423364 41423558 -114206562 - MTD LTR MaLR -3 416 196 1 901 457 220 97 44 chr4 41423573 41423687 -114206433 - B1_Mur3 SINE Alu -27 122 3 1 901 362 232 287 72 chr4 41423687 41423766 -114206354 - MTD LTR MaLR -206 215 146 1 901 3111 142 48 20 chr4 41423766 41424312 -114205808 - RLTR31_Mm LTR ERVK 0 561 1 1 901 362 232 287 72 chr4 41424312 41424401 -114205719 - MTD LTR MaLR -276 145 8 1 901 816 147 0 53 chr4 41425663 41425814 -114204306 + B1_Mur4 SINE Alu 6 148 -2 1 901 207 0 0 0 chr4 41425820 41425843 -114204277 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 901 422 212 0 27 chr4 41429198 41429291 -114200829 + B1F1 SINE Alu 11 99 -21 1 901 1259 83 32 32 chr4 41429293 41429480 -114200640 + B2_Mm2 SINE B2 3 189 -6 1 901 806 183 150 0 chr4 41429482 41429635 -114200485 + B3 SINE B2 32 207 -9 1 901 889 144 20 20 chr4 41429637 41429786 -114200334 - B1_Mur4 SINE Alu 0 150 2 1 901 329 0 24 0 chr4 41429802 41429843 -114200277 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1 901 577 289 26 7 chr4 41429991 41430144 -114199976 + RSINE1 SINE B4 10 165 0 1 901 500 183 456 0 chr4 41430229 41430372 -114199748 + B3A SINE B2 2 209 -7 1 901 690 191 72 67 chr4 41430405 41430721 -114199399 - MTC-int LTR MaLR -647 611 131 1 901 1366 167 171 101 chr4 41430724 41431001 -114199119 - MTC LTR MaLR -8 413 107 1 901 862 140 257 0 chr4 41431001 41431172 -114198948 + B3 SINE B2 2 216 0 1 901 1366 167 171 101 chr4 41431172 41431280 -114198840 - MTC LTR MaLR -315 106 1 1 901 390 134 15 0 chr4 41431281 41431348 -114198772 - MTC-int LTR MaLR -1125 133 66 1 901 232 285 77 6 chr4 41431761 41431899 -114198221 + MIRc SINE MIR 9 158 -110 1 901 448 230 39 20 chr4 41431972 41432073 -114198047 - MTEa LTR MaLR -204 175 73 1 901 1267 51 0 0 chr4 41432073 41432229 -114197891 + B2_Mm1a SINE B2 1 156 -37 1 901 200 35 35 0 chr4 41432229 41432258 -114197862 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 901 425 189 14 0 chr4 41432268 41432342 -114197778 - MTEa LTR MaLR -294 85 11 1 901 348 24 0 0 chr4 41432350 41432391 -114197729 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 901 282 344 0 10 chr4 41432471 41432568 -114197552 + PB1 SINE Alu 17 112 -15 1 901 307 219 0 0 chr4 41432615 41432679 -114197441 + B1_Mur4 SINE Alu 41 104 -46 1 901 230 268 56 0 chr4 41432790 41432861 -114197259 + ID_B1 SINE B4 68 142 -82 1 901 383 265 29 39 chr4 41432807 41432909 -114197211 + B1_Mur3 SINE Alu 5 105 -44 1 901 312 228 109 0 chr4 41432916 41433008 -114197112 + L1ME4a LINE L1 6010 6111 -13 1 901 22 0 0 0 chr4 41433018 41433040 -114197080 + AT_rich Low_complexity Low_complexity 1 22 0 1 901 1088 102 0 0 chr4 41433041 41433188 -114196932 - B1_Mus2 SINE Alu 0 147 1 1 901 972 144 122 11 chr4 41433314 41433503 -114196617 - B3 SINE B2 -4 212 3 1 901 396 293 8 8 chr4 41433510 41433627 -114196493 - PB1D10 SINE Alu 0 117 1 1 901 1026 128 7 26 chr4 41433839 41433992 -114196128 + B1_Mur4 SINE Alu 1 150 0 1 901 21 0 0 0 chr4 41434019 41434040 -114196080 + AT_rich Low_complexity Low_complexity 1 21 0 1 901 351 65 0 0 chr4 41434040 41434086 -114196034 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 901 294 311 109 36 chr4 41434225 41434335 -114195785 - PB1D7 SINE Alu 0 120 3 1 901 405 276 98 75 chr4 41434343 41434393 -114195727 - L1MB7 LINE L1 0 6184 6136 1 901 635 199 87 14 chr4 41434393 41434531 -114195589 - B1_Mur2 SINE Alu 0 149 2 1 901 405 276 98 75 chr4 41434531 41434746 -114195374 - L1MB7 LINE L1 -49 6135 5913 1 901 214 227 23 0 chr4 41434751 41434795 -114195325 + ID_B1 SINE B4 83 127 -97 1 901 214 227 23 0 chr4 41434864 41434908 -114195212 + ID_B1 SINE B4 83 127 -97 1 901 214 227 23 0 chr4 41434977 41435021 -114195099 + ID_B1 SINE B4 83 127 -97 1 901 470 267 29 7 chr4 41435090 41435226 -114194894 + ID_B1 SINE B4 83 221 -3 1 901 325 170 48 0 chr4 41435237 41435306 -114194814 - L1MB7 LINE L1 -256 5924 5853 1 901 225 167 0 0 chr4 41435372 41435426 -114194694 + A-rich Low_complexity Low_complexity 1 54 0 1 901 673 243 86 120 chr4 41435426 41435800 -114194320 - L1MB8 LINE L1 -18 6160 5822 1 901 229 260 115 0 chr4 41435864 41435968 -114194152 - L1MB8 LINE L1 -491 5687 5572 1 901 708 161 0 71 chr4 41435999 41436126 -114193994 - B1_Mur4 SINE Alu -31 119 2 1 901 322 346 34 111 chr4 41436128 41436362 -114193758 - L1MB8 LINE L1 -601 5583 5368 1 901 301 231 0 0 chr4 41436364 41436416 -114193704 - RSINE1 SINE B4 -106 59 8 1 901 23 0 0 0 chr4 41436417 41436440 -114193680 + AT_rich Low_complexity Low_complexity 1 23 0 1 901 262 278 89 15 chr4 41436440 41436575 -114193545 - L1MB8 LINE L1 -946 5200 5056 1 901 381 228 13 0 chr4 41436580 41436659 -114193461 - ID4_ SINE ID -2 81 2 1 901 365 239 24 103 chr4 41436676 41436802 -114193318 - PB1 SINE Alu -11 116 1 1 901 380 237 71 36 chr4 41436802 41436942 -114193178 - L1MB8 LINE L1 -1103 5043 4899 1 901 822 151 20 20 chr4 41436959 41437108 -114193012 + B1_Mur2 SINE Alu 1 149 0 1 901 216 0 0 0 chr4 41437108 41437132 -114192988 + (A)n Simple_repeat Simple_repeat 1 24 0 1 901 443 215 52 73 chr4 41437445 41437636 -114192484 + RLTR23 LTR ERV1 244 430 0 1 901 564 205 123 0 chr4 41437681 41437803 -114192317 + B1_Mur2 SINE Alu 5 141 -8 1 901 654 286 0 36 chr4 41437811 41438007 -114192113 - B3A SINE B2 -5 193 5 1 901 369 0 0 0 chr4 41438036 41438077 -114192043 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 901 669 292 57 0 chr4 41438251 41438443 -114191677 - B3 SINE B2 -13 203 1 1 901 474 248 37 44 chr4 41438510 41438645 -114191475 - RSINE1 SINE B4 -14 151 18 1 901 207 0 0 0 chr4 41438677 41438700 -114191420 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 901 643 180 164 0 chr4 41438704 41438826 -114191294 - B1_Mur2 SINE Alu -6 143 2 1 901 1087 232 54 89 chr4 41438828 41438996 -114191124 - L1MB8 LINE L1 -1349 4797 4654 1 901 680 196 62 42 chr4 41438996 41439140 -114190980 - B1_Mur1 SINE Alu -2 147 1 1 901 1087 232 54 89 chr4 41439140 41439377 -114190743 - L1MB8 LINE L1 -1493 4653 4406 1 901 211 250 0 0 chr4 41439457 41439501 -114190619 + B2_Mm2 SINE B2 56 99 -96 1 901 416 227 73 0 chr4 41439476 41439586 -114190534 + B3 SINE B2 75 192 -24 1 901 240 35 0 0 chr4 41439589 41439618 -114190502 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 901 441 222 0 0 chr4 41439626 41439698 -114190422 + ID_B1 SINE B4 146 217 -7 1 901 21 0 0 0 chr4 41440953 41440974 -114189146 + AT_rich Low_complexity Low_complexity 1 21 0 1 901 423 0 0 0 chr4 41442157 41442204 -114187916 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 901 1080 177 0 0 chr4 41442356 41442520 -114187600 + B3 SINE B2 1 164 -52 1 901 288 111 0 0 chr4 41442520 41442565 -114187555 + (CATG)n Simple_repeat Simple_repeat 3 47 0 1 901 450 236 151 28 chr4 41442645 41442824 -114187296 - MIRb SINE MIR -8 260 60 1 901 333 68 0 0 chr4 41443237 41443281 -114186839 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 901 186 43 0 0 chr4 41443915 41443938 -114186182 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 1 901 843 78 117 0 chr4 41443940 41444068 -114186052 - B1_Mur4 SINE Alu -7 143 1 1 901 1160 30 0 0 chr4 41447153 41447285 -114182835 - B1_Mus2 SINE Alu -15 132 1 1 901 301 315 0 0 chr4 41447617 41447690 -114182430 - PB1D10 SINE Alu -41 76 4 1 901 867 120 233 6 chr4 41448218 41448360 -114181760 + B3 SINE B2 1 149 -67 1 901 188 111 0 27 chr4 41448360 41448397 -114181723 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 901 867 120 233 6 chr4 41448397 41448430 -114181690 + B3 SINE B2 150 214 -2 1 901 927 119 224 17 chr4 41448455 41448634 -114181486 + B3 SINE B2 1 216 0 1 901 1632 151 85 65 chr4 41450512 41450853 -114179267 + ORR1C2 LTR MaLR 1 348 -36 1 901 1254 48 0 0 chr4 41450853 41450999 -114179121 + B1_Mus2 SINE Alu 2 147 0 1 901 339 44 0 0 chr4 41450999 41451044 -114179076 + (A)n Simple_repeat Simple_repeat 1 45 0 1 901 368 91 0 35 chr4 41451044 41451101 -114179019 + ORR1C2 LTR MaLR 330 384 0 1 901 369 281 0 11 chr4 41451191 41451281 -114178839 + RSINE1 SINE B4 43 131 -34 1 901 217 227 0 0 chr4 41454413 41454457 -114175663 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 1 901 351 0 0 0 chr4 41455446 41455485 -114174635 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 901 226 274 22 87 chr4 41455672 41455764 -114174356 - MLT1H-int LTR MaLR -962 447 362 1 901 213 293 34 17 chr4 41456089 41456148 -114173972 + MIR SINE MIR 6 65 -197 1 901 494 199 94 8 chr4 41456220 41456332 -114173788 + B1F SINE Alu 2 120 0 1 901 366 256 0 12 chr4 41456340 41456423 -114173697 + ID_B1 SINE B4 103 184 -40 1 901 414 100 0 0 chr4 41456423 41456483 -114173637 + (GGA)n Simple_repeat Simple_repeat 2 61 0 1 901 185 302 192 45 chr4 41456513 41456690 -114173430 + L2 LINE L2 2726 2928 -491 1 901 365 238 108 10 chr4 41456724 41456820 -114173300 + B1F1 SINE Alu 7 112 -37 1 901 581 248 108 82 chr4 41456820 41456978 -114173142 + RSINE1 SINE B4 3 164 -1 1 901 268 290 103 82 chr4 41456978 41457004 -114173116 + B2_Mm2 SINE B2 2 189 -6 1 901 671 203 50 14 chr4 41457015 41457155 -114172965 + B1_Mur1 SINE Alu 5 149 0 1 901 653 169 51 0 chr4 41457364 41457482 -114172638 + B3 SINE B2 1 124 -92 1 901 426 39 0 0 chr4 41457485 41457537 -114172583 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 901 200 182 45 0 chr4 41457666 41457710 -114172410 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 901 833 232 62 5 chr4 41458796 41458991 -114171129 - B3 SINE B2 -10 206 1 1 901 449 121 12 0 chr4 41459930 41460013 -114170107 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 901 611 154 29 0 chr4 41460107 41460243 -114169877 + GA-rich Low_complexity Low_complexity 2 141 0 1 901 407 268 141 39 chr4 41460281 41460537 -114169583 - HAL1 LINE L1 -1623 884 603 1 901 311 267 111 48 chr4 41460678 41460867 -114169253 - HAL1 LINE L1 -2130 377 177 1 901 579 298 117 15 chr4 41461044 41461368 -114168752 - L1M5 LINE L1 -901 5245 4889 1 901 528 16 0 0 chr4 41461581 41461642 -114168478 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 901 1021 275 11 35 chr4 41461675 41461958 -114168162 - B4A SINE B4 -16 276 1 1 901 1143 62 0 7 chr4 41461968 41462115 -114168005 - B1_Mus2 SINE Alu 0 147 2 1 901 596 169 86 31 chr4 41462124 41462252 -114167868 - B1_Mur2 SINE Alu 0 149 15 1 901 355 294 37 67 chr4 41462126 41462290 -114167830 - B4A SINE B4 -68 224 66 1 901 273 227 245 85 chr4 41462274 41462380 -114167740 - RSINE1 SINE B4 -31 134 12 1 901 225 0 0 0 chr4 41462386 41462411 -114167709 + (T)n Simple_repeat Simple_repeat 1 25 0 1 901 292 265 9 64 chr4 41462812 41462921 -114167199 - ID4 SINE ID -30 122 20 1 901 318 274 0 0 chr4 41463039 41463163 -114166957 + (TG)n Simple_repeat Simple_repeat 2 125 0 1 901 214 192 56 37 chr4 41463352 41463406 -114166714 - PB1D10 SINE Alu -9 108 54 1 901 1042 100 0 0 chr4 41463620 41463760 -114166360 - B1_Mur3 SINE Alu 0 149 10 1 901 252 240 15 53 chr4 41463660 41463792 -114166328 - ORR1B1-int LTR MaLR -755 754 628 1 901 457 236 55 36 chr4 41463810 41463920 -114166200 + PB1D7 SINE Alu 3 114 -6 1 901 231 299 96 67 chr4 41464447 41464551 -114165569 - MLT1G1 LTR MaLR -253 326 220 1 901 222 191 0 0 chr4 41464939 41464981 -114165139 + G-rich Low_complexity Low_complexity 1 42 0 1 901 358 298 49 8 chr4 41465989 41466111 -114164009 - MIR SINE MIR -60 148 22 1 901 495 107 0 0 chr4 41466232 41466307 -114163813 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 901 384 22 0 0 chr4 41466311 41466356 -114163764 + (CATAC)n Simple_repeat Simple_repeat 1 45 0 1 901 238 345 98 32 chr4 41468090 41468213 -114161907 - MamRep1879 DNA hAT? -84 132 2 1 901 252 358 19 56 chr4 41470760 41470920 -114159200 + LTR85c LTR Gypsy? 399 552 -271 1 901 371 249 60 62 chr4 41472490 41472649 -114157471 + B3 SINE B2 30 211 -5 1 901 963 247 40 137 chr4 41472658 41473103 -114157017 - Lx8 LINE L1 0 7473 7072 1 901 456 264 102 102 chr4 41473506 41473811 -114156309 + B4 SINE B4 2 278 -14 1 901 616 180 81 0 chr4 41474554 41474769 -114155351 - L1_Mur3 LINE L1 -4499 1381 1149 1 901 534 210 105 0 chr4 41475860 41475984 -114154136 + RSINE1 SINE B4 6 142 -23 1 901 581 311 33 39 chr4 41476154 41476422 -114153698 - B4A SINE B4 -8 284 1 1 901 1080 81 15 0 chr4 41476733 41476869 -114153251 + B1_Mus2 SINE Alu 1 138 -9 1 901 379 33 50 0 chr4 41476869 41476929 -114153191 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 901 223 83 111 0 chr4 41476938 41476974 -114153146 + B1_Mus2 SINE Alu 76 115 -32 1 901 621 27 0 0 chr4 41476979 41477054 -114153066 + (GAAAA)n Simple_repeat Simple_repeat 5 79 0 1 901 234 150 0 0 chr4 41477054 41477094 -114153026 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1 901 674 186 86 0 chr4 41477108 41477248 -114152872 + B3A SINE B2 5 156 -42 1 901 204 268 0 0 chr4 41477849 41477890 -114152230 + MIR SINE MIR 51 91 -171 1 901 405 141 268 52 chr4 41478284 41478381 -114151739 + PB1D9 SINE Alu 1 118 -2 1 901 291 190 0 0 chr4 41480571 41480629 -114149491 + (CACG)n Simple_repeat Simple_repeat 1 58 0 1 901 435 19 0 0 chr4 41480704 41480756 -114149364 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 901 725 206 14 22 chr4 41480756 41480895 -114149225 - B1_Mur2 SINE Alu -10 139 2 1 901 180 0 0 0 chr4 41480896 41480916 -114149204 + (TTTTTG)n Simple_repeat Simple_repeat 6 25 0 1 901 627 277 14 0 chr4 41480916 41481057 -114149063 - B1F1 SINE Alu 0 149 7 1 901 246 81 0 0 chr4 41481061 41481098 -114149022 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1 901 1161 75 0 7 chr4 41481101 41481248 -114148872 - B1_Mus1 SINE Alu 0 148 3 1 901 462 309 40 8 chr4 41481307 41481431 -114148689 - RSINE1 SINE B4 -12 153 26 1 901 273 57 0 0 chr4 41481577 41481612 -114148508 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 1 901 926 168 0 11 chr4 41481615 41481796 -114148324 + CT-rich Low_complexity Low_complexity 1 179 0 1 901 1040 195 82 5 chr4 41481798 41481994 -114148126 - B3 SINE B2 -4 212 2 1 901 288 217 100 0 chr4 41482310 41482370 -114147750 + ID4_ SINE ID 2 67 -16 1 901 684 228 70 32 chr4 41482534 41482720 -114147400 + B3A SINE B2 2 194 -4 1 901 246 320 38 48 chr4 41482773 41482878 -114147242 - PB1D10 SINE Alu -2 115 12 1 901 442 254 175 0 chr4 41482896 41483022 -114147098 - B1F SINE Alu 0 149 2 1 901 861 231 134 27 chr4 41483060 41483322 -114146798 + B4A SINE B4 3 292 0 1 901 301 302 197 12 chr4 41483366 41483626 -114146494 - L1M5 LINE L1 -267 5857 5550 1 901 198 0 0 0 chr4 41484149 41484171 -114145949 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 901 510 271 42 61 chr4 41484175 41484340 -114145780 - RSINE1 SINE B4 0 165 4 1 901 784 163 13 58 chr4 41484388 41484544 -114145576 + B1_Mur3 SINE Alu 1 149 0 1 901 1195 178 20 0 chr4 41484557 41484759 -114145361 - B3 SINE B2 -10 206 1 1 901 644 272 13 20 chr4 41484771 41484921 -114145199 - ID_B1 SINE B4 -1 223 75 1 901 666 313 53 28 chr4 41484998 41485281 -114144839 - B4A SINE B4 0 292 3 1 901 212 219 53 27 chr4 41486442 41486517 -114143603 + GA-rich Low_complexity Low_complexity 2 78 0 1 901 328 244 182 55 chr4 41488341 41488493 -114141627 + PB1D7 SINE Alu 7 145 -4 1 901 977 184 21 116 chr4 41488502 41488735 -114141385 + B3 SINE B2 2 212 -4 1 901 1464 83 16 0 chr4 41488935 41489127 -114140993 + B2_Mm2 SINE B2 1 195 0 1 901 246 374 80 30 chr4 41489947 41490184 -114139936 + L2c LINE L2 3070 3318 -69 1 901 808 155 262 0 chr4 41490492 41490660 -114139460 + B3 SINE B2 1 212 -4 1 901 427 248 95 0 chr4 41490821 41490926 -114139194 - PB1D10 SINE Alu -2 115 1 1 901 250 274 109 50 chr4 41491285 41491404 -114138716 - MIRm SINE MIR -150 126 1 1 901 904 82 0 15 chr4 41491772 41491909 -114138211 + (TTC)n Simple_repeat Simple_repeat 2 136 0 1 901 189 0 0 0 chr4 41493503 41493524 -114136596 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 901 248 259 5 20 chr4 41493599 41493700 -114136420 - BC1_Mm scRNA scRNA -46 106 9 1 901 491 276 44 25 chr4 41493712 41493872 -114136248 + MIRb SINE MIR 88 250 -18 1 901 294 29 0 0 chr4 41493920 41493955 -114136165 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 901 258 56 0 0 chr4 41493955 41493991 -114136129 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 901 519 219 18 73 chr4 41494346 41494489 -114135631 - B1_Mur4 SINE Alu -5 145 1 1 901 289 265 98 49 chr4 41494380 41494503 -114135617 - B4 SINE B4 -94 198 70 1 901 1164 150 21 5 chr4 41494964 41495152 -114134968 - B3 SINE B2 -25 191 1 1 901 963 284 111 62 chr4 41495161 41495754 -114134366 - L1MD3 LINE L1 -401 7594 6973 1 901 248 214 126 35 chr4 41495831 41495843 -114134277 - MT2B2 LTR ERVL -322 262 226 1 901 313 220 0 0 chr4 41495843 41495902 -114134218 - PB1D10 SINE Alu -22 95 37 1 901 248 214 126 35 chr4 41495902 41495918 -114134202 - MT2B2 LTR ERVL -322 225 168 1 901 356 291 30 5 chr4 41496028 41496152 -114133968 - RSINE1 SINE B4 0 165 36 1 901 206 250 0 0 chr4 41496211 41496251 -114133869 + L2 LINE L2 2821 2860 -559 1 901 1142 200 9 23 chr4 41496547 41496762 -114133358 - B3 SINE B2 -3 213 2 1 901 279 277 74 7 chr4 41496906 41497055 -114133065 - MIRc SINE MIR 0 268 110 1 901 1269 99 28 0 chr4 41497595 41497777 -114132343 + B2_Mm1t SINE B2 2 188 -5 1 901 363 349 39 26 chr4 41498066 41498222 -114131898 - RSINE1 SINE B4 0 165 8 1 901 539 261 50 0 chr4 41498258 41498377 -114131743 - B1F SINE Alu -15 134 10 1 901 207 0 0 0 chr4 41498510 41498533 -114131587 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 901 767 219 15 0 chr4 41498557 41498694 -114131426 - B1_Mur3 SINE Alu -10 139 1 1 901 191 152 22 0 chr4 41498783 41498829 -114131291 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 901 205 338 28 0 chr4 41499088 41499159 -114130961 + MIRb SINE MIR 170 242 -26 1 901 360 260 216 12 chr4 41499723 41499894 -114130226 + MIRb SINE MIR 2 207 -61 1 901 249 255 0 0 chr4 41500005 41500056 -114130064 - L2a LINE L2 0 3426 3376 1 901 239 301 66 66 chr4 41500152 41500273 -114129847 - L2a LINE L2 -244 3143 3023 1 901 445 285 14 35 chr4 41500410 41500552 -114129568 - ID_B1 SINE B4 0 224 86 2 901 238 292 8 159 chr4 41500661 41500787 -114129333 - PB1D10 SINE Alu -10 107 1 3 901 493 259 55 18 chr4 41500798 41500908 -114129212 - PB1D7 SINE Alu 0 120 7 4 901 502 265 111 13 chr4 41501123 41501268 -114128852 + MER2 DNA MER2_type 2 161 -184 5 901 609 193 35 17 chr4 41501268 41501384 -114128736 + PB1D9 SINE Alu 3 120 0 6 901 535 270 8 0 chr4 41501505 41501631 -114128489 - PB1 SINE Alu 0 127 1 7 901 263 182 0 52 chr4 41502606 41502664 -114127456 + L1MC5 LINE L1 7179 7233 -728 8 901 597 64 0 0 chr4 41503308 41503386 -114126734 + (TCC)n Simple_repeat Simple_repeat 1 78 0 9 901 234 313 114 97 chr4 41504034 41504271 -114125849 + L2b LINE L2 3135 3375 0 1 901 191 299 91 38 chr4 41504636 41504768 -114125352 - L2c LINE L2 -227 3160 3022 1 901 501 273 231 42 chr4 41505630 41505894 -114124226 - L3 LINE CR1 -363 4126 3813 1 901 760 182 30 0 chr4 41505992 41506124 -114123996 + B1F SINE Alu 13 148 -1 1 901 311 258 110 96 chr4 41505993 41506139 -114123981 + B4A SINE B4 99 246 -46 1 901 863 123 66 0 chr4 41507034 41507156 -114122964 - B3 SINE B2 -86 130 1 1 901 949 231 77 0 chr4 41507711 41507906 -114122214 + B3 SINE B2 1 210 -6 1 901 1565 26 0 39 chr4 41508045 41508248 -114121872 + L1Md_F2 LINE L1 6388 6582 0 1 901 270 297 57 90 chr4 41508256 41508378 -114121742 + PB1D9 SINE Alu 3 120 0 1 901 245 262 123 28 chr4 41508423 41508529 -114121591 + MER103 DNA DNA 31 146 -20 1 901 573 239 23 0 chr4 41508754 41508884 -114121236 - B1F2 SINE Alu 0 149 17 2 901 267 296 71 107 chr4 41508794 41508934 -114121186 - B4 SINE B4 -94 198 64 2 901 804 281 31 0 chr4 41508937 41508974 -114121146 - B3A SINE B2 0 198 156 2 901 278 50 0 24 chr4 41508974 41509015 -114121105 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 901 804 281 31 0 chr4 41509015 41509169 -114120951 - B3A SINE B2 -43 155 2 2 901 799 245 38 1 chr4 41509241 41509436 -114120684 - B4A SINE B4 -6 286 80 2 901 1779 214 93 5 chr4 41509624 41510000 -114120120 - MTD LTR MaLR -8 411 3 2 901 664 298 22 27 chr4 41510059 41510084 -114120036 - B3A SINE B2 -15 183 162 2 901 231 88 0 0 chr4 41510084 41510118 -114120002 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 901 664 298 22 27 chr4 41510118 41510275 -114119845 - B3A SINE B2 -37 161 2 2 901 823 265 57 5 chr4 41510280 41510492 -114119628 - ID_B1 SINE B4 0 224 2 2 901 243 240 149 28 chr4 41510682 41510789 -114119331 - Charlie24 DNA MER1_type -685 1765 1646 2 901 307 308 9 45 chr4 41510916 41511028 -114119092 + ID_B1 SINE B4 62 169 -55 3 901 393 254 59 73 chr4 41511021 41511044 -114119076 + B1F SINE Alu 15 148 -1 3 901 533 239 18 0 chr4 41511044 41511157 -114118963 + ID_B1 SINE B4 110 224 0 3 901 360 269 89 75 chr4 41511236 41511449 -114118671 + MT2B LTR ERVL 49 264 -337 3 901 533 208 35 94 chr4 41511316 41511360 -114118760 + ID_B1 SINE B4 65 222 0 3 901 914 57 40 0 chr4 41511360 41511484 -114118636 + B1_Mus2 SINE Alu 19 147 0 3 901 218 264 76 134 chr4 41511861 41512032 -114118088 + L2b LINE L2 3054 3214 -161 3 901 291 359 33 41 chr4 41513764 41513886 -114116234 + L2b LINE L2 3252 3372 -3 3 901 23 97 0 0 chr4 41516272 41516344 -114113776 + GC_rich Low_complexity Low_complexity 1 72 0 3 901 279 0 0 0 chr4 41517804 41517835 -114112285 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 901 233 250 65 59 chr4 41518229 41518382 -114111738 - L1ME1 LINE L1 -112 6067 5914 3 901 801 0 0 0 chr4 41518789 41518878 -114111242 + (GGAAA)n Simple_repeat Simple_repeat 4 92 0 4 901 530 95 11 0 chr4 41518961 41519056 -114111064 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 901 342 0 0 0 chr4 41519056 41519094 -114111026 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 901 315 0 0 0 chr4 41519094 41519128 -114110992 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 901 631 285 28 7 chr4 41519130 41519275 -114110845 - B3A SINE B2 -46 152 5 4 901 665 367 80 29 chr4 41520039 41520488 -114109632 - L2a LINE L2 -23 3403 2932 4 901 1712 230 62 9 chr4 41520525 41520947 -114109173 - Charlie20a DNA Charlie -289 518 75 4 901 234 0 0 0 chr4 41521224 41521250 -114108870 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 4 901 478 243 65 106 chr4 41521321 41521463 -114108657 + RSINE1 SINE B4 3 140 -25 4 901 342 67 0 0 chr4 41521463 41521508 -114108612 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 901 478 243 65 106 chr4 41521508 41521535 -114108585 + RSINE1 SINE B4 141 165 0 4 901 240 41 0 75 chr4 41521645 41521698 -114108422 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 5 901 416 63 32 0 chr4 41521909 41521972 -114108148 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 901 278 325 32 59 chr4 41521975 41522194 -114107926 + L2a LINE L2 3212 3424 -2 5 901 224 330 8 68 chr4 41522377 41522494 -114107626 - L2a LINE L2 -1332 2087 1978 4 901 861 298 84 11 chr4 41523828 41524159 -114105961 - MER47B DNA MER2_type -5 361 2 5 901 318 26 0 0 chr4 41524659 41524698 -114105422 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 901 327 321 184 18 chr4 41525269 41525437 -114104683 + L1MEf LINE L1 970 1165 -5250 5 901 296 247 196 0 chr4 41525444 41525541 -114104579 + Tigger5 DNA MER2_type 2291 2406 0 5 901 423 275 83 36 chr4 41525594 41525896 -114104224 + L1MEf LINE L1 1198 1513 -4902 5 901 477 0 0 0 chr4 41526272 41526325 -114103795 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 901 307 251 131 0 chr4 41526348 41526503 -114103617 + L1MEf LINE L1 1530 1756 -4583 5 901 478 328 23 8 chr4 41526505 41526637 -114103483 + RSINE1 SINE B4 3 136 -29 5 901 423 0 0 0 chr4 41526641 41526688 -114103432 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 901 402 289 66 109 chr4 41526693 41526996 -114103124 + L1MEf LINE L1 1766 2055 -4345 5 901 487 284 75 0 chr4 41527171 41527305 -114102815 - ID_B1 SINE B4 0 224 81 6 901 247 208 0 94 chr4 41527500 41527585 -114102535 + C-rich Low_complexity Low_complexity 2 78 0 6 901 1172 72 0 0 chr4 41527675 41527814 -114102306 + B1_Mus1 SINE Alu 1 139 -9 6 901 243 79 0 0 chr4 41527814 41527852 -114102268 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 6 901 1063 148 66 0 chr4 41527872 41528055 -114102065 + B2_Mm2 SINE B2 1 195 0 6 901 394 247 0 0 chr4 41528147 41528228 -114101892 + L1MEf LINE L1 2773 2853 -3466 5 901 483 268 60 9 chr4 41528279 41528494 -114101626 + L1MEf LINE L1 3036 3261 -3058 5 901 265 247 120 110 chr4 41528502 41528693 -114101427 + B3A SINE B2 2 194 -1 6 901 496 252 13 97 chr4 41528691 41528845 -114101275 + RSINE1 SINE B4 2 142 -23 6 901 247 122 0 0 chr4 41529001 41529042 -114101078 + L1MEf LINE L1 3364 3404 -2915 5 901 1759 187 161 36 chr4 41529054 41529582 -114100538 - Lx9 LINE L1 -1 7643 7050 6 901 658 265 60 154 chr4 41529593 41529709 -114100411 + L1MEf LINE L1 3442 3550 -2769 5 901 192 125 0 0 chr4 41529709 41529741 -114100379 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 901 658 265 60 154 chr4 41529741 41530372 -114099748 + L1MEf LINE L1 3551 4118 -2201 5 901 217 327 130 19 chr4 41530630 41530792 -114099328 - MIRb SINE MIR -23 245 66 6 901 532 103 31 0 chr4 41530832 41530929 -114099191 + (TTCA)n Simple_repeat Simple_repeat 3 102 0 7 901 373 318 175 0 chr4 41530929 41531055 -114099065 - RSINE1 SINE B4 -5 160 13 7 901 274 203 13 39 chr4 41531298 41531375 -114098745 + CT-rich Low_complexity Low_complexity 4 78 0 7 901 22 0 0 0 chr4 41531466 41531488 -114098632 + AT_rich Low_complexity Low_complexity 1 22 0 7 901 1254 61 0 0 chr4 41531749 41531897 -114098223 - B1_Mus1 SINE Alu 0 148 1 7 901 981 192 49 11 chr4 41531909 41532093 -114098027 - B3 SINE B2 0 216 26 7 901 695 167 35 0 chr4 41532095 41532209 -114097911 + B1_Mur4 SINE Alu 2 119 -31 7 901 216 0 0 0 chr4 41532216 41532240 -114097880 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 7 901 544 198 25 17 chr4 41532311 41532429 -114097691 + PB1D9 SINE Alu 2 120 0 7 901 225 0 0 0 chr4 41532432 41532457 -114097663 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 7 901 735 176 72 14 chr4 41532642 41532780 -114097340 - B1_Mur2 SINE Alu -2 147 2 8 901 1176 78 0 0 chr4 41532950 41533092 -114097028 - B1_Mm SINE Alu -5 142 1 8 901 504 244 198 12 chr4 41533174 41533292 -114096828 + B3 SINE B2 24 165 -51 8 901 201 74 0 0 chr4 41533292 41533319 -114096801 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 901 504 244 198 12 chr4 41533319 41533362 -114096758 + B3 SINE B2 166 215 -1 8 901 227 303 39 26 chr4 41533496 41533574 -114096546 - B4 SINE B4 0 292 214 8 901 216 135 0 0 chr4 41533579 41533616 -114096504 + (TTG)n Simple_repeat Simple_repeat 3 39 0 8 901 608 209 26 0 chr4 41533618 41533733 -114096387 - B1_Mur3 SINE Alu -9 140 23 8 901 432 130 0 0 chr4 41533823 41533892 -114096228 + (TA)n Simple_repeat Simple_repeat 2 70 0 8 901 312 286 44 111 chr4 41533893 41534074 -114096046 - L1MC4a LINE L1 -1203 6679 6511 8 901 921 207 60 5 chr4 41534341 41534540 -114095580 - B3 SINE B2 -5 211 2 8 901 269 221 51 25 chr4 41534568 41534647 -114095473 - L1MC4a LINE L1 -535 5589 5509 8 901 297 382 22 93 chr4 41535135 41535360 -114094760 - MIRb SINE MIR -36 232 24 9 901 855 131 0 0 chr4 41535413 41535550 -114094570 + (TTC)n Simple_repeat Simple_repeat 3 139 0 9 901 221 107 159 9 chr4 41535538 41535651 -114094469 + CT-rich Low_complexity Low_complexity 4 133 0 9 901 1326 67 0 6 chr4 41535637 41535998 -114094122 + (TCC)n Simple_repeat Simple_repeat 1 359 0 9 901 206 250 0 26 chr4 41536000 41536078 -114094042 + CT-rich Low_complexity Low_complexity 1 76 0 9 901 266 333 46 103 chr4 41536080 41536098 -114094022 - B4 SINE B4 -50 242 143 8 901 628 266 7 27 chr4 41536098 41536245 -114093875 - B1_Mur1 SINE Alu 0 149 6 9 901 22 80 0 0 chr4 41536254 41536304 -114093816 + AT_rich Low_complexity Low_complexity 1 50 0 9 901 890 134 8 0 chr4 41536343 41536477 -114093643 + B1_Mus1 SINE Alu 7 141 -7 9 901 366 295 88 82 chr4 41536346 41536516 -114093604 + B4 SINE B4 94 264 -28 9 901 291 125 0 0 chr4 41536532 41536572 -114093548 - U1 snRNA snRNA -2 163 124 9 901 411 296 47 23 chr4 41537161 41537289 -114092831 - B3A SINE B2 0 198 68 1 901 801 180 21 7 chr4 41537411 41537551 -114092569 - B1_Mur2 SINE Alu -1 148 7 1 901 836 75 0 0 chr4 41537749 41537856 -114092264 + B1_Mus1 SINE Alu 40 146 -2 1 901 1264 116 0 6 chr4 41537873 41538055 -114092065 - B2_Mm2 SINE B2 -14 181 1 1 901 305 394 45 13 chr4 41538534 41538691 -114091429 + MIRb SINE MIR 89 250 -18 1 901 331 172 15 30 chr4 41541276 41541408 -114088712 + (TGG)n Simple_repeat Simple_repeat 2 131 0 1 901 823 127 41 34 chr4 41541408 41541555 -114088565 - B1_Mus1 SINE Alu 0 148 1 1 901 1171 167 15 15 chr4 41541932 41542138 -114087982 - B3 SINE B2 -5 211 6 1 901 211 333 64 0 chr4 41542178 41542256 -114087864 - MIR3 SINE MIR -39 169 87 1 901 251 309 39 123 chr4 41542443 41542598 -114087522 - ID_B1 SINE B4 -3 221 80 1 901 511 223 145 8 chr4 41542621 41542752 -114087368 - B1_Mur1 SINE Alu 0 149 1 1 901 408 20 0 0 chr4 41542764 41542813 -114087307 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 901 654 273 0 0 chr4 41542814 41542957 -114087163 - RSINE1 SINE B4 -20 145 3 1 901 243 318 45 0 chr4 41542957 41543043 -114087077 - ID_B1 SINE B4 -130 94 5 1 901 244 333 88 58 chr4 41543489 41543887 -114086233 - L1ME4a LINE L1 -163 5961 5552 1 901 186 43 0 0 chr4 41544089 41544112 -114086008 + (T)n Simple_repeat Simple_repeat 1 23 0 1 901 396 40 0 0 chr4 41545166 41545216 -114084904 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 901 377 254 58 50 chr4 41545286 41545406 -114084714 - RSINE1 SINE B4 -42 123 3 1 901 385 241 0 98 chr4 41545480 41545572 -114084548 - ID4_ SINE ID 0 83 1 1 901 363 261 0 85 chr4 41546300 41546430 -114083690 + PB1D7 SINE Alu 2 120 0 1 901 402 57 0 0 chr4 41546438 41546491 -114083629 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 901 343 252 133 57 chr4 41546620 41546725 -114083395 - PB1D10 SINE Alu -1 116 4 1 901 305 214 59 12 chr4 41546768 41546853 -114083267 - L1MB8 LINE L1 -30 6148 6060 1 901 610 271 28 10 chr4 41546857 41547008 -114083112 - ID_B1 SINE B4 -58 234 82 1 901 228 189 19 19 chr4 41546973 41547027 -114083093 - MT2B LTR ERVL -309 292 239 1 901 981 261 37 0 chr4 41547057 41547379 -114082741 - L1MB8 LINE L1 -169 6009 5676 1 901 335 296 110 7 chr4 41547933 41548069 -114082051 - MIRb SINE MIR -103 165 16 1 901 377 305 50 25 chr4 41548392 41548513 -114081607 + L2a LINE L2 3303 3426 0 1 901 200 295 11 64 chr4 41548515 41548609 -114081511 + MIR SINE MIR 42 130 -132 1 901 688 248 14 0 chr4 41548935 41549076 -114081044 + B1_Mur1 SINE Alu 2 144 -5 1 901 1190 167 18 22 chr4 41549243 41549469 -114080651 + URR1B DNA MER1_type 1 225 0 1 902 216 86 0 0 chr4 41549965 41550000 -114080120 + (GGAGAA)n Simple_repeat Simple_repeat 3 37 0 1 902 327 299 42 78 chr4 41551702 41551894 -114078226 + MIRb SINE MIR 35 219 -49 1 902 714 237 53 0 chr4 41552195 41552347 -114077773 - RSINE1 SINE B4 -2 163 4 1 902 1565 188 70 83 chr4 41553271 41553655 -114076465 + MTE2a LTR MaLR 1 379 0 1 902 1267 35 0 0 chr4 41554477 41554620 -114075500 + B1_Mm SINE Alu 5 147 0 1 902 201 94 0 0 chr4 41554621 41554653 -114075467 + (A)n Simple_repeat Simple_repeat 1 32 0 1 902 506 231 37 0 chr4 41556054 41556162 -114073958 - RSINE1 SINE B4 -9 156 45 1 902 640 234 28 115 chr4 41556347 41556564 -114073556 - B3A SINE B2 0 198 1 1 902 649 249 77 48 chr4 41557350 41557557 -114072563 - B3 SINE B2 -1 215 3 1 902 875 176 7 0 chr4 41558011 41558153 -114071967 + B1_Mus1 SINE Alu 1 143 -5 1 902 971 94 0 62 chr4 41558157 41558349 -114071771 + GA-rich Low_complexity Low_complexity 1 180 0 1 902 382 301 47 42 chr4 41558850 41559041 -114071079 - MIRb SINE MIR -31 237 46 1 902 29 0 0 0 chr4 41559857 41559886 -114070234 + AT_rich Low_complexity Low_complexity 1 29 0 1 902 365 177 0 0 chr4 41560257 41560319 -114069801 + B1F SINE Alu 36 97 -52 1 902 373 273 23 147 chr4 41560330 41560459 -114069661 + PB1 SINE Alu 7 119 -30 1 902 324 120 0 0 chr4 41560476 41560526 -114069594 + (CCCCCT)n Simple_repeat Simple_repeat 1 50 0 1 902 387 283 99 56 chr4 41561069 41561230 -114068890 - MIR SINE MIR -28 234 67 1 902 218 276 64 72 chr4 41561747 41561872 -114068248 - MIRm SINE MIR 0 276 153 1 902 240 311 0 39 chr4 41561796 41561873 -114068247 - L2c LINE L2 -35 3352 3279 1 902 1337 168 9 5 chr4 41561875 41562097 -114068023 - URR1B DNA MER1_type -2 223 1 1 902 185 256 56 5 chr4 41563459 41563530 -114066590 + MIRm SINE MIR 111 180 -88 1 902 3155 105 7 0 chr4 41564114 41564532 -114065588 - MTC LTR MaLR 0 421 1 1 902 316 263 52 105 chr4 41564584 41564623 -114065497 + B4 SINE B4 54 217 -75 1 902 804 144 0 8 chr4 41564623 41564756 -114065364 + B1_Mur4 SINE Alu 9 140 -10 1 902 2407 200 41 12 chr4 41566078 41566568 -114063552 - MLT1D LTR MaLR -1 504 1 1 902 457 205 62 9 chr4 41567033 41567146 -114062974 + B1F1 SINE Alu 30 148 -1 1 902 531 188 0 0 chr4 41567217 41567334 -114062786 + CT-rich Low_complexity Low_complexity 1 117 0 1 902 515 287 16 0 chr4 41568650 41568772 -114061348 + RSINE1 SINE B4 16 139 -26 1 902 468 91 0 0 chr4 41568793 41568859 -114061261 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 902 1981 129 141 43 chr4 41569605 41569953 -114060167 - RLTR14 LTR ERV1 0 382 1 1 902 888 171 0 58 chr4 41570000 41570020 -114060100 + B1_Mus1 SINE Alu 3 16 -132 1 902 1250 125 22 0 chr4 41570020 41570204 -114059916 - B2_Mm2 SINE B2 -6 189 2 1 902 888 171 0 58 chr4 41570204 41570338 -114059782 + B1_Mus1 SINE Alu 17 148 0 1 902 620 189 15 33 chr4 41571240 41571514 -114058606 + CT-rich Low_complexity Low_complexity 1 268 0 1 902 442 269 9 18 chr4 41571519 41571629 -114058491 - PB1D10 SINE Alu -8 109 1 1 902 335 228 151 76 chr4 41573761 41573946 -114056174 - CYRA11_Mm Unknown Y-chromosome -222 395 197 1 902 610 164 117 0 chr4 41573820 41573948 -114056172 + URR1B DNA MER1_type 83 225 0 1 902 797 167 72 0 chr4 41573980 41574118 -114056002 - B1_Mus1 SINE Alu 0 148 1 1 902 233 389 103 45 chr4 41574314 41574470 -114055650 - Charlie15a DNA MER1_type -57 167 3 1 902 441 0 0 0 chr4 41575251 41575300 -114054820 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 902 211 303 160 10 chr4 41575951 41576051 -114054069 - MIRc SINE MIR -38 230 116 1 902 403 245 48 22 chr4 41576245 41576383 -114053737 - PB1D10 SINE Alu -1 146 2 1 902 185 0 40 0 chr4 41577897 41577922 -114052198 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 902 369 225 0 12 chr4 41577956 41578037 -114052083 - RSINE1 SINE B4 -83 82 3 1 902 183 229 20 40 chr4 41578342 41578392 -114051728 - L2b LINE L2 -219 3156 3108 1 902 724 297 67 67 chr4 41580260 41580690 -114049430 + L1MB8 LINE L1 5744 6173 -5 1 902 320 274 35 121 chr4 41580705 41580846 -114049274 + B1F SINE Alu 2 130 -19 1 902 245 53 0 50 chr4 41580849 41580889 -114049231 + (GGGTG)n Simple_repeat Simple_repeat 3 40 0 1 902 481 212 20 102 chr4 41580980 41581127 -114048993 - B1_Mur3 SINE Alu -1 148 14 1 902 415 256 159 69 chr4 41581467 41581656 -114048464 + MIRb SINE MIR 55 260 -8 1 902 252 278 80 36 chr4 41582212 41582350 -114047770 - L2b LINE L2 -819 2600 2457 1 902 358 283 67 0 chr4 41583756 41583876 -114046244 - MIR3 SINE MIR -39 169 42 1 902 224 254 28 0 chr4 41586816 41586887 -114043233 + (TCTCTG)n Simple_repeat Simple_repeat 2 74 0 1 902 27 87 0 0 chr4 41587067 41587136 -114042984 + GC_rich Low_complexity Low_complexity 1 69 0 1 902 240 59 0 0 chr4 41587207 41587241 -114042879 + (CTCG)n Simple_repeat Simple_repeat 1 34 0 1 902 274 268 0 0 chr4 41587275 41587357 -114042763 + (GGCTG)n Simple_repeat Simple_repeat 5 86 0 1 902 656 252 92 28 chr4 41588455 41588699 -114041421 + LTR81B LTR ERV1? 1092 1393 0 1 902 226 389 0 26 chr4 41588703 41588819 -114041301 - L2 LINE L2 -534 2885 2773 1 902 446 317 0 33 chr4 41589035 41589185 -114040935 + RSINE1 SINE B4 2 146 -19 1 902 180 369 138 0 chr4 41589249 41589409 -114040711 - L2 LINE L2 -963 2456 2275 1 902 278 372 121 50 chr4 41589826 41590123 -114039997 + ORR1E LTR MaLR 1 318 -41 1 902 332 22 22 0 chr4 41590131 41590176 -114039944 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1 902 540 250 8 23 chr4 41590185 41590316 -114039804 - RSINE1 SINE B4 -35 130 2 1 902 844 163 7 41 chr4 41590349 41590496 -114039624 + B1_Mur2 SINE Alu 2 143 -6 1 902 285 181 35 0 chr4 41590565 41590635 -114039485 - MTE2b LTR MaLR -2 377 306 1 902 854 99 38 15 chr4 41590662 41590795 -114039325 + B1_Mm SINE Alu 2 137 -10 1 902 793 118 0 16 chr4 41590820 41590941 -114039179 - B1_Mur3 SINE Alu -13 136 18 1 902 1341 245 77 19 chr4 41590948 41591272 -114038848 - MTE2b LTR MaLR -36 343 1 1 902 210 154 0 97 chr4 41591345 41591417 -114038703 + T-rich Low_complexity Low_complexity 3 67 0 1 902 450 0 0 0 chr4 41591954 41592004 -114038116 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 902 442 250 29 9 chr4 41592006 41592111 -114038009 + RSINE1 SINE B4 26 132 -33 1 902 279 0 0 0 chr4 41592126 41592157 -114037963 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 902 240 111 0 0 chr4 41592163 41592199 -114037921 + (CCA)n Simple_repeat Simple_repeat 3 38 0 1 902 21 0 0 0 chr4 41592306 41592327 -114037793 + GC_rich Low_complexity Low_complexity 1 21 0 1 902 486 320 34 103 chr4 41592476 41592856 -114037264 - MLT1N2 LTR MaLR -2 560 207 1 902 480 274 11 18 chr4 41592982 41593128 -114036992 - PB1D7 SINE Alu -29 282 5 2 902 474 209 50 42 chr4 41593195 41593315 -114036805 + ID_B1 SINE B4 102 222 -2 2 902 297 289 63 40 chr4 41593325 41593451 -114036669 - MLT1N2 LTR MaLR -263 148 20 1 902 316 255 64 0 chr4 41593614 41593708 -114036412 - B1_Mur1 SINE Alu 0 149 50 2 902 234 128 0 0 chr4 41593767 41593806 -114036314 + (T)n Simple_repeat Simple_repeat 1 39 0 2 902 1270 41 0 0 chr4 41593806 41593953 -114036167 - B1_Mm SINE Alu 0 147 1 2 902 221 182 18 0 chr4 41594651 41594706 -114035414 + (TATG)n Simple_repeat Simple_repeat 1 56 0 2 902 558 237 144 0 chr4 41594714 41594730 -114035390 - RSINE1 SINE B4 -3 162 147 2 902 417 39 0 0 chr4 41594730 41594781 -114035339 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 902 558 237 144 0 chr4 41594781 41594903 -114035217 - RSINE1 SINE B4 -19 146 5 2 902 234 340 81 48 chr4 41595563 41595773 -114034347 + L2 LINE L2 1943 2159 -1260 2 902 285 344 46 23 chr4 41595862 41595993 -114034127 - MIRm SINE MIR -133 143 10 2 902 195 85 64 0 chr4 41596112 41596159 -114033961 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2 902 634 209 0 0 chr4 41596392 41596507 -114033613 - PB1D10 SINE Alu -2 115 1 2 902 1140 90 0 0 chr4 41596704 41596848 -114033272 - B1_Mus2 SINE Alu -1 146 3 2 902 262 245 0 0 chr4 41596848 41596901 -114033219 - ID SINE ID -170 54 2 2 902 294 132 0 19 chr4 41597339 41597393 -114032727 + RSINE1 SINE B4 11 63 -102 2 902 568 275 90 5 chr4 41597404 41597627 -114032493 - MLT1D LTR MaLR -263 242 1 2 902 423 0 0 0 chr4 41597702 41597749 -114032371 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 902 562 254 8 0 chr4 41597749 41597871 -114032249 - B1_Mur1 SINE Alu -14 135 13 2 902 885 80 13 1 chr4 41597872 41598013 -114032107 + B2_Mm2 SINE B2 4 155 -61 2 902 382 0 0 94 chr4 41598032 41598096 -114032024 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2 902 1237 48 0 0 chr4 41598159 41598304 -114031816 + B1_Mus1 SINE Alu 2 146 -2 2 902 1155 270 82 14 chr4 41598496 41598984 -114031136 - HAL1b LINE L1 -219 1790 1270 2 902 818 201 162 0 chr4 41599002 41599181 -114030939 - ID_B1 SINE B4 -15 209 2 2 902 256 330 140 5 chr4 41599463 41599670 -114030450 - HAL1b LINE L1 -1362 647 413 2 902 319 272 130 0 chr4 41600745 41600837 -114029283 - MER81 DNA AcHobo 0 114 11 2 902 513 154 0 0 chr4 41601669 41601760 -114028360 + GA-rich Low_complexity Low_complexity 1 91 0 2 902 215 311 9 19 chr4 41601772 41601877 -114028243 + GA-rich Low_complexity Low_complexity 1 104 0 2 902 647 157 96 0 chr4 41601894 41602009 -114028111 + B3A SINE B2 1 126 -72 2 902 405 0 0 0 chr4 41602025 41602070 -114028050 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 902 829 223 0 13 chr4 41603135 41603285 -114026835 + B1_Mur2 SINE Alu 1 148 -1 2 902 786 190 15 0 chr4 41603775 41603912 -114026208 - B1_Mur2 SINE Alu -10 139 1 2 902 444 128 0 0 chr4 41605718 41605796 -114024324 + (CGGGG)n Simple_repeat Simple_repeat 1 78 0 2 902 369 0 0 0 chr4 41606961 41607002 -114023118 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 902 204 40 0 0 chr4 41607940 41607965 -114022155 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 902 273 29 0 0 chr4 41610192 41610226 -114019894 + (CCA)n Simple_repeat Simple_repeat 3 36 0 2 902 213 222 22 0 chr4 41612675 41612720 -114017400 + GA-rich Low_complexity Low_complexity 3 48 0 2 902 416 67 0 16 chr4 41613058 41613079 -114017041 + (TTC)n Simple_repeat Simple_repeat 1 21 0 2 902 1620 0 0 0 chr4 41613079 41613259 -114016861 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 902 416 67 0 16 chr4 41613259 41613298 -114016822 + (TTC)n Simple_repeat Simple_repeat 1 39 0 2 902 683 212 83 0 chr4 41613298 41613430 -114016690 - B1_Mur1 SINE Alu -6 143 1 2 902 23 0 0 0 chr4 41614474 41614497 -114015623 + AT_rich Low_complexity Low_complexity 1 23 0 2 902 250 152 0 0 chr4 41615234 41615280 -114014840 + B1_Mur4 SINE Alu 105 150 0 2 902 348 332 136 43 chr4 41616191 41616449 -114013671 + LTR16C LTR ERVL 77 358 -131 2 902 266 284 58 10 chr4 41616445 41616548 -114013572 - PB1D7 SINE Alu 0 120 13 2 902 314 294 35 23 chr4 41616587 41616674 -114013446 - RSINE1 SINE B4 -3 162 75 2 902 743 215 0 39 chr4 41617193 41617348 -114012772 + B1_Mur1 SINE Alu 1 149 0 2 902 459 0 0 0 chr4 41618596 41618647 -114011473 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 902 194 128 0 25 chr4 41619155 41619195 -114010925 + G-rich Low_complexity Low_complexity 4 42 0 2 902 209 161 0 0 chr4 41624227 41624258 -114005862 + (CAGG)n Simple_repeat Simple_repeat 3 33 0 2 902 381 22 0 0 chr4 41624392 41624438 -114005682 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 902 192 200 0 0 chr4 41626618 41626658 -114003462 + G-rich Low_complexity Low_complexity 3 42 0 2 902 886 172 14 0 chr4 41627986 41628131 -114001989 + B1_Mur3 SINE Alu 3 149 0 2 902 294 143 0 0 chr4 41628131 41628180 -114001940 + (A)n Simple_repeat Simple_repeat 1 49 0 2 902 342 0 0 0 chr4 41628191 41628229 -114001891 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 902 1422 37 0 0 chr4 41628616 41628911 -114001209 + (CA)n Simple_repeat Simple_repeat 1 295 0 2 902 189 0 0 0 chr4 41629047 41629068 -114001052 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 902 245 138 0 97 chr4 41630635 41630707 -113999413 + G-rich Low_complexity Low_complexity 2 66 0 2 902 24 0 0 0 chr4 41630709 41630733 -113999387 + GC_rich Low_complexity Low_complexity 1 24 0 2 902 189 196 0 0 chr4 41630902 41630948 -113999172 + (CGGG)n Simple_repeat Simple_repeat 4 49 0 2 902 253 303 0 0 chr4 41632068 41632144 -113997976 + GA-rich Low_complexity Low_complexity 1 76 0 2 902 591 87 19 9 chr4 41632152 41632257 -113997863 + (GA)n Simple_repeat Simple_repeat 2 107 0 2 902 222 269 0 0 chr4 41632671 41632723 -113997397 - L3b LINE CR1 -191 291 240 2 902 360 0 0 0 chr4 41632728 41632768 -113997352 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 902 202 259 103 0 chr4 41634015 41634073 -113996047 + MIRb SINE MIR 126 189 -79 2 902 279 0 0 0 chr4 41634408 41634439 -113995681 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 902 254 376 73 7 chr4 41634498 41634612 -113995508 - MIR SINE MIR -13 249 133 2 902 351 44 0 0 chr4 41634612 41634657 -113995463 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 2 902 254 376 73 7 chr4 41634657 41634692 -113995428 - MIR SINE MIR -130 132 91 2 902 678 209 46 118 chr4 41635040 41635235 -113994885 - B3 SINE B2 0 216 36 2 902 746 222 98 21 chr4 41635262 41635455 -113994665 - B3 SINE B2 -8 208 1 2 902 180 0 0 0 chr4 41636230 41636250 -113993870 + (T)n Simple_repeat Simple_repeat 1 20 0 2 902 435 78 0 0 chr4 41637804 41637868 -113992252 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 902 318 129 0 16 chr4 41638733 41638796 -113991324 + MER121 Unknown Unknown 133 194 -218 2 902 306 0 0 0 chr4 41641770 41641804 -113988316 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 902 567 0 0 0 chr4 41642060 41642123 -113987997 + (CCA)n Simple_repeat Simple_repeat 3 65 0 2 902 195 100 0 0 chr4 41642469 41642499 -113987621 + (CCG)n Simple_repeat Simple_repeat 2 31 0 2 902 204 111 0 0 chr4 41642548 41642584 -113987536 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 2 902 201 234 26 86 chr4 41642600 41642717 -113987403 + C-rich Low_complexity Low_complexity 6 115 0 2 902 243 0 0 0 chr4 41643461 41643488 -113986632 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 902 432 55 0 0 chr4 41644114 41644169 -113985951 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 902 576 0 0 0 chr4 41644523 41644587 -113985533 + (TGG)n Simple_repeat Simple_repeat 2 65 0 2 902 256 203 50 75 chr4 41645132 41645212 -113984908 - ID4 SINE ID -2 81 4 2 902 225 304 49 25 chr4 41647421 41647502 -113982618 - MIRm SINE MIR -29 247 165 2 902 304 299 64 0 chr4 41647513 41647642 -113982478 + L1M5 LINE L1 5523 5658 -582 2 902 188 359 0 25 chr4 41647939 41648019 -113982101 - L2a LINE L2 -92 3334 3257 2 902 612 38 0 0 chr4 41648313 41648392 -113981728 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 902 776 211 14 0 chr4 41648440 41648582 -113981538 - B1_Mur3 SINE Alu -5 144 1 2 902 496 297 22 7 chr4 41648598 41648737 -113981383 - B1F2 SINE Alu -8 141 1 2 902 939 222 20 35 chr4 41649086 41649287 -113980833 - B3A SINE B2 0 198 1 2 902 292 146 18 18 chr4 41650077 41650133 -113979987 - L2c LINE L2 -4 3383 3328 2 902 333 0 0 0 chr4 41650552 41650589 -113979531 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 902 500 264 56 8 chr4 41650629 41650755 -113979365 + ID_B1 SINE B4 89 220 -4 2 902 394 222 44 11 chr4 41650774 41650865 -113979255 + PB1D7 SINE Alu 27 120 0 2 902 183 129 0 0 chr4 41651783 41651814 -113978306 + (TGG)n Simple_repeat Simple_repeat 2 32 0 2 902 391 328 5 123 chr4 41652127 41652339 -113977781 + MIRb SINE MIR 45 231 -37 2 902 347 295 63 21 chr4 41655665 41655807 -113974313 - B1F SINE Alu -1 148 1 2 902 303 319 103 7 chr4 41656094 41656230 -113973890 - L2a LINE L2 0 3426 3278 2 902 669 202 117 3 chr4 41656238 41656411 -113973709 - B3 SINE B2 -11 205 1 2 902 386 291 0 0 chr4 41656473 41656559 -113973561 + RSINE1 SINE B4 79 164 -1 2 902 278 239 204 0 chr4 41656585 41656673 -113973447 + MLT1C LTR MaLR 357 462 -5 2 902 331 263 95 0 chr4 41657172 41657267 -113972853 - RSINE1 SINE B4 -59 106 3 2 902 575 227 78 20 chr4 41657284 41657408 -113972712 - B3 SINE B2 -41 175 50 2 902 813 211 200 0 chr4 41657408 41657588 -113972532 - B3 SINE B2 0 216 1 2 902 575 227 78 20 chr4 41657588 41657616 -113972504 - B3 SINE B2 -167 49 15 2 902 216 315 109 18 chr4 41658668 41658778 -113971342 - MIR SINE MIR -47 215 96 3 902 1254 28 0 0 chr4 41661171 41661312 -113968808 + B1_Mus1 SINE Alu 1 141 -7 3 902 931 190 63 24 chr4 41662732 41662937 -113967183 - B3 SINE B2 0 216 4 3 902 335 267 0 82 chr4 41663155 41663351 -113966769 + G-rich Low_complexity Low_complexity 1 180 0 3 902 334 296 74 0 chr4 41665415 41665523 -113964597 + L2b LINE L2 3249 3364 -11 3 902 417 278 9 44 chr4 41665555 41665668 -113964452 - PB1D10 SINE Alu -6 111 3 3 902 585 238 49 53 chr4 41665845 41666066 -113964054 + B3A SINE B2 1 212 -4 3 902 456 287 46 8 chr4 41667021 41667151 -113962969 + RSINE1 SINE B4 2 136 -29 3 902 655 217 8 15 chr4 41667958 41668089 -113962031 + B1_Mur2 SINE Alu 5 134 -15 3 902 257 297 77 29 chr4 41668004 41668200 -113961920 - RMER17C LTR ERVK -66 344 134 3 902 1280 112 6 6 chr4 41668200 41668379 -113961741 + B2_Mm1t SINE B2 1 179 -14 3 902 257 297 77 29 chr4 41668379 41668428 -113961692 - RMER17C LTR ERVK -277 133 88 3 902 310 139 0 22 chr4 41668422 41668488 -113961632 + B2_Mm2 SINE B2 47 109 -107 3 902 22 56 0 0 chr4 41668498 41668534 -113961586 + AT_rich Low_complexity Low_complexity 1 36 0 3 902 293 127 0 35 chr4 41668534 41668579 -113961541 + polypurine Low_complexity Low_complexity 3 47 0 3 902 378 0 0 0 chr4 41668579 41668621 -113961499 + (GGAGA)n Simple_repeat Simple_repeat 3 44 0 3 902 293 127 0 35 chr4 41668621 41668632 -113961488 + polypurine Low_complexity Low_complexity 48 57 0 3 902 247 162 197 42 chr4 41670622 41670693 -113959427 + 4.5SRNA scRNA scRNA 7 88 -6 3 902 413 221 0 63 chr4 41670640 41670751 -113959369 + B1F2 SINE Alu 41 144 -5 3 902 441 0 0 0 chr4 41672228 41672277 -113957843 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 902 843 286 58 4 chr4 41673552 41673812 -113956308 - MER58B DNA MER1_type -1 340 67 3 902 191 336 98 0 chr4 41674576 41674698 -113955422 - L3b LINE CR1 -108 374 241 3 902 396 0 0 0 chr4 41677567 41677611 -113952509 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 902 384 22 0 0 chr4 41677623 41677668 -113952452 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 902 222 232 0 18 chr4 41677680 41677737 -113952383 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 3 902 335 202 12 0 chr4 41677750 41677834 -113952286 + GA-rich Low_complexity Low_complexity 1 85 0 3 902 722 159 0 7 chr4 41678887 41678937 -113951183 + polypyrimidine Low_complexity Low_complexity 90 139 0 3 902 957 78 5 43 chr4 41678937 41679124 -113950996 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 902 722 159 0 7 chr4 41679124 41679212 -113950908 + polypyrimidine Low_complexity Low_complexity 3 89 0 3 902 1144 88 0 0 chr4 41679257 41679404 -113950716 - B1_Mus1 SINE Alu 0 148 2 3 902 1243 106 28 6 chr4 41680670 41680851 -113949269 + B2_Mm2 SINE B2 5 189 -6 3 903 544 229 34 34 chr4 41681073 41681222 -113948898 + B1F1 SINE Alu 1 149 0 3 903 210 267 75 62 chr4 41681223 41681303 -113948817 + ID4_ SINE ID 3 83 0 3 903 303 309 62 62 chr4 41681347 41681492 -113948628 - MLT1F1 LTR MaLR -5 564 420 3 903 1169 192 24 9 chr4 41681494 41681704 -113948416 - B3 SINE B2 0 216 4 3 903 685 177 95 0 chr4 41681719 41681877 -113948243 - MTEb LTR MaLR -2 377 205 3 903 403 241 0 44 chr4 41681880 41681971 -113948149 + B3 SINE B2 1 87 -129 3 903 274 250 44 0 chr4 41681975 41682043 -113948077 + MTEb LTR MaLR 33 103 -276 3 903 432 301 196 7 chr4 41682127 41682408 -113947712 - L2 LINE L2 -767 2652 2319 3 903 2002 243 65 13 chr4 41682411 41682887 -113947233 + Lx6 LINE L1 6960 7460 0 3 903 880 131 26 46 chr4 41682894 41683046 -113947074 + B1_Mur4 SINE Alu 1 149 -1 3 903 537 337 42 31 chr4 41683112 41683400 -113946720 - B4A SINE B4 0 292 2 3 903 1450 66 0 21 chr4 41683487 41683674 -113946446 + B2_Mm2 SINE B2 2 184 -11 3 903 242 311 0 0 chr4 41683728 41683789 -113946331 + tRNA-Ala-GCA tRNA tRNA 8 68 -7 3 903 593 215 34 27 chr4 41684065 41684213 -113945907 - B1F2 SINE Alu 0 149 1 3 903 1186 124 32 11 chr4 41684733 41684920 -113945200 + B2_Mm2 SINE B2 1 191 -4 3 903 221 294 0 0 chr4 41684980 41685031 -113945089 + ID SINE ID 21 71 -153 3 903 806 213 75 10 chr4 41686901 41687100 -113943020 + B3 SINE B2 4 215 -1 3 903 201 267 0 0 chr4 41688606 41688651 -113941469 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 3 903 228 224 254 0 chr4 41688675 41688742 -113941378 - B1_Mus2 SINE Alu -57 90 7 3 903 195 309 54 81 chr4 41688952 41689100 -113941020 + MIR SINE MIR 114 257 -5 3 903 1177 62 0 7 chr4 41689371 41689383 -113940737 - B1_Mm SINE Alu -1 146 135 3 903 297 0 0 0 chr4 41689383 41689416 -113940704 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 3 903 1177 62 0 7 chr4 41689416 41689550 -113940570 - B1_Mm SINE Alu -13 134 1 3 903 290 376 77 44 chr4 41689550 41689698 -113940422 + MLT1J2 LTR MaLR 38 192 -256 3 903 977 214 27 54 chr4 41689698 41689920 -113940200 + B3 SINE B2 1 216 0 3 903 290 376 77 44 chr4 41689920 41689952 -113940168 + MLT1J2 LTR MaLR 193 224 -224 3 903 2710 137 96 18 chr4 41689965 41690476 -113939644 - RMER15 LTR ERVL 0 575 25 3 903 244 176 39 19 chr4 41690489 41690541 -113939579 + MT2C_Mm LTR ERVL 1 53 -480 3 903 1017 234 229 31 chr4 41690544 41690585 -113939535 + MT2A LTR ERVL 1 43 -490 3 903 1182 62 0 0 chr4 41690585 41690719 -113939401 + B1_Mm SINE Alu 1 134 -13 3 903 218 0 94 0 chr4 41690719 41690751 -113939369 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 903 1017 234 229 31 chr4 41690761 41691103 -113939017 + MT2A LTR ERVL 44 460 -73 3 903 385 180 11 11 chr4 41691593 41691683 -113938437 + GA-rich Low_complexity Low_complexity 3 92 0 3 903 459 320 16 0 chr4 41692195 41692323 -113937797 + ID_B1 SINE B4 91 220 -4 3 903 225 0 0 0 chr4 41692371 41692396 -113937724 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 903 441 0 0 0 chr4 41692400 41692449 -113937671 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 903 506 180 110 0 chr4 41692463 41692563 -113937557 + B3 SINE B2 5 115 -101 3 903 387 0 0 0 chr4 41692588 41692631 -113937489 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 903 290 224 15 0 chr4 41692773 41692840 -113937280 - RLTR11A2 LTR ERVK 0 527 460 3 903 260 290 0 0 chr4 41695498 41695567 -113934553 - MurERV4-int LTR ERVK -407 4853 4785 3 903 1872 95 0 0 chr4 41695626 41695890 -113934230 - ORR1A2 LTR MaLR -4 323 60 3 903 358 299 19 33 chr4 41695924 41696197 -113933923 - IAPLTR3-int LTR ERVK -1907 5499 5404 3 903 3105 50 31 8 chr4 41696686 41697073 -113933047 + MTA_Mm LTR MaLR 1 396 0 3 903 658 318 29 26 chr4 41697911 41698260 -113931860 - IAPLTR3-int LTR ERVK -3283 3538 3189 3 903 862 205 91 9 chr4 41700390 41700621 -113929499 - RLTR11A2 LTR ERVK -62 465 216 3 903 996 206 20 60 chr4 41700615 41700854 -113929266 - RLTR11A2 LTR ERVK -268 259 34 3 903 225 0 0 0 chr4 41700854 41700879 -113929241 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 903 1104 105 0 18 chr4 41700887 41701044 -113929076 - B2_Mm2 SINE B2 -33 162 1 3 903 303 85 0 0 chr4 41701055 41701102 -113929018 - RLTR11A2 LTR ERVK -480 47 1 3 903 503 252 16 16 chr4 41701175 41701300 -113928820 - PB1 SINE Alu 0 127 3 3 903 186 167 0 0 chr4 41701308 41701344 -113928776 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 903 1192 55 0 0 chr4 41701367 41701512 -113928608 - B1_Mus1 SINE Alu 0 148 4 3 903 460 259 0 51 chr4 41701517 41701635 -113928485 - PB1D10 SINE Alu -1 116 5 3 903 626 258 90 39 chr4 41701933 41702167 -113927953 + Lx8 LINE L1 7041 7286 -187 3 903 422 290 28 0 chr4 41705684 41705791 -113924329 + PB1D10 SINE Alu 1 110 -7 3 903 343 317 20 10 chr4 41705801 41705903 -113924217 + PB1D10 SINE Alu 2 104 -13 3 903 294 280 12 0 chr4 41705911 41705994 -113924126 + BC1_Mm scRNA scRNA 2 85 -67 3 903 327 283 71 0 chr4 41706863 41706962 -113923158 - MER5B DNA MER1_type -8 170 65 3 903 313 224 45 0 chr4 41707958 41708025 -113922095 + ID4 SINE ID 1 70 -13 3 903 467 277 50 21 chr4 41708048 41708188 -113921932 - ID_B1 SINE B4 -80 144 1 3 903 411 21 0 0 chr4 41710210 41710258 -113919862 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 903 251 287 139 0 chr4 41711009 41711117 -113919003 - L2a LINE L2 -24 3402 3280 3 903 333 270 94 11 chr4 41711371 41711488 -113918632 - B1F SINE Alu -1 116 2 3 903 413 292 34 90 chr4 41713396 41713573 -113916547 + B4 SINE B4 1 167 -125 3 903 231 271 23 34 chr4 41713599 41713687 -113916433 + RSINE1 SINE B4 78 164 -1 3 903 256 93 39 26 chr4 41713704 41713781 -113916339 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 903 236 250 218 18 chr4 41714018 41714128 -113915992 - MIRb SINE MIR -103 165 34 3 903 223 214 0 0 chr4 41715781 41715823 -113914297 - B4 SINE B4 -209 83 42 3 903 209 194 0 0 chr4 41717081 41717117 -113913003 + CT-rich Low_complexity Low_complexity 1 36 0 3 903 658 199 58 14 chr4 41717824 41717962 -113912158 + B1_Mur1 SINE Alu 5 148 -1 3 903 347 243 158 79 chr4 41719384 41719536 -113910584 + RSINE1 SINE B4 2 165 0 3 903 215 310 0 0 chr4 41720552 41720623 -113909497 + C-rich Low_complexity Low_complexity 5 75 0 3 903 1345 62 90 0 chr4 41721701 41721879 -113908241 - B2_Mm2 SINE B2 -1 194 1 3 903 687 198 173 6 chr4 41721965 41722133 -113907987 + B3A SINE B2 3 198 0 3 903 455 214 68 23 chr4 41722169 41722311 -113907809 + MTE2a LTR MaLR 223 374 -5 3 903 260 350 58 25 chr4 41722505 41722625 -113907495 - MER70B LTR ERVL -444 134 11 3 903 244 204 94 31 chr4 41722927 41723023 -113907097 - MER90a LTR ERV1 -512 102 1 4 903 360 0 0 0 chr4 41723295 41723335 -113906785 + (CAT)n Simple_repeat Simple_repeat 2 41 0 4 903 751 212 30 0 chr4 41723336 41723468 -113906652 - B1_Mur2 SINE Alu -13 136 1 4 903 444 216 20 30 chr4 41723479 41723579 -113906541 - PB1D10 SINE Alu -7 110 12 4 903 226 287 81 73 chr4 41723495 41723619 -113906501 - ID_B1 SINE B4 -49 175 51 4 903 1858 223 91 29 chr4 41723749 41724276 -113905844 + Lx8 LINE L1 6914 7473 0 4 903 652 202 104 78 chr4 41724291 41724484 -113905636 + B3A SINE B2 1 198 0 4 903 1101 223 36 0 chr4 41724845 41725092 -113905028 - Lx6 LINE L1 -26 7434 7179 4 903 787 202 107 0 chr4 41725744 41725922 -113904198 - B3A SINE B2 0 198 2 4 903 432 268 61 26 chr4 41726025 41726140 -113903980 + ID_B1 SINE B4 29 147 -77 4 903 359 260 0 86 chr4 41726166 41726271 -113903849 + ID_B1 SINE B4 129 224 0 4 903 1032 216 25 5 chr4 41726328 41726528 -113903592 - B3 SINE B2 -2 214 11 4 903 1067 72 14 0 chr4 41726686 41726824 -113903296 - B1_Mus1 SINE Alu -8 140 1 4 903 267 219 10 20 chr4 41727034 41727132 -113902988 + (TA)n Simple_repeat Simple_repeat 2 98 0 4 903 230 327 8 127 chr4 41727226 41727352 -113902768 - B1F SINE Alu -38 111 1 4 903 1025 142 37 37 chr4 41727573 41727763 -113902357 - B2_Mm2 SINE B2 -4 191 2 4 903 587 209 47 0 chr4 41727783 41727912 -113902208 - B1F SINE Alu -1 148 14 4 903 466 285 32 26 chr4 41727912 41727938 -113902182 - ID_B1 SINE B4 -1 223 68 4 903 21 0 0 0 chr4 41728449 41728470 -113901650 + GC_rich Low_complexity Low_complexity 1 21 0 4 903 371 353 115 53 chr4 41729182 41729784 -113900336 + L2 LINE L2 2360 2998 -421 4 903 557 106 5 87 chr4 41729801 41729997 -113900123 + CT-rich Low_complexity Low_complexity 1 180 0 4 903 334 229 111 28 chr4 41730200 41730308 -113899812 - PB1D9 SINE Alu -2 118 2 4 903 384 22 0 0 chr4 41730976 41731021 -113899099 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 4 903 1349 37 0 0 chr4 41731021 41731182 -113898938 - B2_Mm2 SINE B2 -33 162 2 4 903 304 297 67 8 chr4 41731205 41731217 -113898903 + B1_Mur1 SINE Alu 24 149 0 4 903 530 215 19 0 chr4 41731217 41731324 -113898796 + ID_B1 SINE B4 116 224 0 4 903 444 19 0 0 chr4 41731405 41731458 -113898662 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 903 514 263 7 68 chr4 41731467 41731614 -113898506 + MLT1A LTR MaLR 226 363 -11 4 903 456 408 36 62 chr4 41731772 41732078 -113898042 + MLT1N2 LTR MaLR 16 313 -249 4 903 612 115 18 9 chr4 41732111 41732225 -113897895 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 4 903 728 91 9 0 chr4 41732483 41732593 -113897527 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 4 903 413 41 0 0 chr4 41732593 41732642 -113897478 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 903 909 89 0 0 chr4 41732643 41732766 -113897354 - B1_Mus2 SINE Alu 0 147 25 4 903 546 403 64 29 chr4 41732890 41733202 -113896918 - MER115 DNA Tip100 -227 466 144 4 903 255 31 0 0 chr4 41734047 41734079 -113896041 + (GGGTG)n Simple_repeat Simple_repeat 1 32 0 4 903 420 346 25 0 chr4 41734798 41734960 -113895160 + MIRb SINE MIR 46 211 -57 4 903 371 259 119 11 chr4 41735064 41735221 -113894899 + MIR SINE MIR 1 166 -96 4 903 242 260 0 40 chr4 41737892 41737968 -113892152 - L2c LINE L2 -1 3386 3314 4 903 229 154 19 19 chr4 41738021 41738074 -113892046 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 903 231 242 228 24 chr4 41738103 41738230 -113891890 - L2c LINE L2 -188 3199 3047 4 903 254 366 72 63 chr4 41739536 41739743 -113890377 - MamRep38 DNA hAT -5 290 82 4 903 472 192 18 54 chr4 41739776 41739901 -113890219 + PB1 SINE Alu 11 126 -1 4 903 305 47 23 0 chr4 41739901 41739944 -113890176 + (CAAAC)n Simple_repeat Simple_repeat 5 48 0 4 903 977 260 22 40 chr4 41741578 41741854 -113888266 - B4A SINE B4 -19 273 3 4 903 438 294 0 106 chr4 41741937 41742070 -113888050 - RSINE1 SINE B4 -1 164 47 4 903 1903 120 92 0 chr4 41742070 41742362 -113887758 + ORR1A2 LTR MaLR 1 319 -8 4 903 211 220 0 17 chr4 41742439 41742459 -113887661 + (TAA)n Simple_repeat Simple_repeat 1 20 0 4 903 1162 42 7 40 chr4 41742459 41742609 -113887511 + B1_Mm SINE Alu 3 147 0 4 903 211 220 0 17 chr4 41742609 41742648 -113887472 + (TAA)n Simple_repeat Simple_repeat 3 40 0 4 903 501 146 0 0 chr4 41743038 41743120 -113887000 - B1_Mur2 SINE Alu 0 149 68 4 903 524 206 167 0 chr4 41743173 41743299 -113886821 + B3A SINE B2 1 147 -51 4 903 408 99 0 0 chr4 41743299 41743370 -113886750 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 903 732 240 199 44 chr4 41743514 41743721 -113886399 + MER21B LTR ERV1 214 461 -402 4 903 2243 153 43 8 chr4 41743721 41744091 -113886029 + ORR1C2 LTR MaLR 1 383 -1 4 903 732 240 199 44 chr4 41744091 41744179 -113885941 + MER21B LTR ERV1 462 555 -308 4 903 473 71 0 14 chr4 41744612 41744683 -113885437 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 903 264 100 0 0 chr4 41744939 41744979 -113885141 + (T)n Simple_repeat Simple_repeat 1 40 0 4 903 1196 61 7 0 chr4 41744979 41745126 -113884994 - B1_Mus1 SINE Alu 0 148 1 4 903 442 321 14 14 chr4 41745833 41745972 -113884148 - MER21B LTR ERV1 -174 689 551 4 903 709 229 0 0 chr4 41746825 41746969 -113883151 + B3A SINE B2 1 144 -54 4 903 351 0 0 0 chr4 41746972 41747011 -113883109 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 903 289 108 40 79 chr4 41747013 41747114 -113883006 + (CAAA)n Simple_repeat Simple_repeat 2 98 0 4 903 326 339 89 12 chr4 41747338 41747586 -113882534 + ERVL-E-int LTR ERVL 3522 3788 -1879 4 903 542 286 90 10 chr4 41747832 41748033 -113882087 - L2a LINE L2 -7 3419 3203 4 903 977 225 0 11 chr4 41748036 41748225 -113881895 + B3A SINE B2 7 193 -5 4 903 403 211 49 69 chr4 41748256 41748358 -113881762 + PB1D9 SINE Alu 2 101 -19 4 903 531 160 0 0 chr4 41748469 41748563 -113881557 + GA-rich Low_complexity Low_complexity 2 95 0 4 903 1128 295 231 7 chr4 41748577 41749290 -113880830 - L2a LINE L2 -339 3080 2208 4 903 956 260 45 5 chr4 41749296 41749516 -113880604 + B4A SINE B4 1 229 -63 4 903 713 291 0 0 chr4 41749514 41749662 -113880458 + B3A SINE B2 12 159 -39 4 903 423 0 0 0 chr4 41749690 41749737 -113880383 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 903 442 338 0 7 chr4 41749902 41750042 -113880078 + MTE2b LTR MaLR 27 165 -214 4 903 374 342 75 25 chr4 41750065 41750266 -113879854 + MT2A LTR ERVL 210 420 -113 4 903 252 339 26 35 chr4 41751607 41751720 -113878400 - MTE-int LTR MaLR -475 1105 994 4 903 295 294 58 93 chr4 41751711 41751850 -113878270 + MTE2b LTR MaLR 242 375 -4 4 903 300 212 8 124 chr4 41751876 41752005 -113878115 + Lx5 LINE L1 6906 7044 -14 4 903 661 205 25 0 chr4 41765863 41765985 -113864135 - B1_Mur1 SINE Alu -18 131 7 4 903 353 317 28 35 chr4 41768691 41768835 -113861285 - MER5A DNA MER1_type -26 163 21 4 903 1099 304 59 34 chr4 41768926 41769334 -113860786 - MT2A LTR ERVL -8 525 108 4 903 416 329 7 87 chr4 41769415 41769565 -113860555 + B4 SINE B4 2 139 -153 4 903 303 286 0 45 chr4 41769583 41769671 -113860449 + RSINE1 SINE B4 82 165 0 4 903 294 29 0 0 chr4 41769671 41769706 -113860414 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 903 198 0 0 0 chr4 41769706 41769727 -113860393 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 903 423 0 0 0 chr4 41769727 41769773 -113860347 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 903 356 269 53 11 chr4 41769821 41769915 -113860205 - MTEa LTR MaLR -279 100 3 4 903 240 323 19 57 chr4 41769918 41770023 -113860097 + B3 SINE B2 27 127 -89 4 903 237 309 58 96 chr4 41770032 41770136 -113859984 + B4A SINE B4 73 172 -120 4 903 621 189 47 47 chr4 41770064 41770192 -113859928 + B1_Mur1 SINE Alu 12 139 -10 4 903 389 20 0 20 chr4 41770192 41770243 -113859877 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 4 903 787 197 0 11 chr4 41770243 41770423 -113859697 + GA-rich Low_complexity Low_complexity 1 178 0 4 903 682 182 79 8 chr4 41770544 41770671 -113859449 - B1_Mur2 SINE Alu 0 149 14 4 903 367 269 13 0 chr4 41770981 41771059 -113859061 + B1_Mus2 SINE Alu 1 79 -68 4 903 333 340 77 58 chr4 41771071 41771330 -113858790 + L1M4 LINE L1 988 1251 -5291 4 903 251 297 32 32 chr4 41771384 41771478 -113858642 + B1_Mus1 SINE Alu 4 97 -51 4 903 448 252 70 28 chr4 41771579 41771722 -113858398 + L1M4 LINE L1 3568 3716 -2928 4 903 917 195 35 17 chr4 41771815 41771987 -113858133 + B3 SINE B2 8 182 -34 4 903 312 91 0 0 chr4 41772001 41772045 -113858075 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 903 709 295 104 59 chr4 41772090 41772167 -113857953 + L1M4 LINE L1 3764 3837 -2807 4 903 916 125 27 27 chr4 41772167 41772315 -113857805 + B1_Mur3 SINE Alu 1 148 -1 4 903 786 270 125 49 chr4 41772315 41773039 -113857081 + L1M4 LINE L1 3838 4595 -2049 4 903 582 54 0 0 chr4 41773059 41773133 -113856987 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 903 689 144 63 0 chr4 41773148 41773259 -113856861 + B1_Mur2 SINE Alu 26 143 -6 4 903 186 43 0 0 chr4 41773261 41773284 -113856836 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 903 643 277 58 0 chr4 41773284 41773526 -113856594 + L1M4 LINE L1 4850 5105 -1539 4 903 269 193 0 0 chr4 41773527 41773584 -113856536 + Lx9 LINE L1 7587 7643 -1 4 903 388 225 12 0 chr4 41773612 41773692 -113856428 + B3A SINE B2 1 81 -117 4 903 256 244 181 31 chr4 41773831 41773958 -113856162 + L1M4 LINE L1 5636 5781 -863 4 903 837 172 0 0 chr4 41775360 41775540 -113854580 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 903 771 197 0 0 chr4 41775552 41775730 -113854390 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 903 448 298 192 26 chr4 41775808 41776038 -113854082 - B4A SINE B4 -23 269 2 4 903 183 232 189 66 chr4 41776116 41776222 -113853898 + L3 LINE CR1 126 244 -4245 4 903 332 299 73 15 chr4 41777091 41777227 -113852893 + B1F SINE Alu 1 144 -5 5 903 280 280 27 0 chr4 41777249 41777324 -113852796 + ID4_ SINE ID 3 79 -4 5 903 1164 121 5 21 chr4 41778033 41778219 -113851901 + B2_Mm2 SINE B2 1 183 -12 5 903 438 245 147 0 chr4 41778208 41778310 -113851810 - B3A SINE B2 0 198 82 5 903 432 51 0 0 chr4 41778356 41778415 -113851705 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 903 1082 110 0 0 chr4 41778444 41778590 -113851530 + B1_Mus1 SINE Alu 3 148 0 5 903 2123 62 0 25 chr4 41778626 41778907 -113851213 + RMER6A LTR ERVK 57 330 -426 5 903 666 0 0 0 chr4 41778934 41779008 -113851112 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 903 1300 154 47 108 chr4 41779015 41779358 -113850762 - RLTRETN_Mm LTR ERVK 0 322 1 5 903 2538 133 49 20 chr4 41779358 41779793 -113850327 + RMER6A LTR ERVK 309 756 0 5 903 270 81 0 0 chr4 41780100 41780137 -113849983 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 903 238 380 43 0 chr4 41780189 41780281 -113849839 - RSINE1 SINE B4 -67 98 3 5 903 431 356 0 0 chr4 41780290 41780436 -113849684 - B1F SINE Alu -3 146 1 5 903 369 0 0 0 chr4 41780491 41780532 -113849588 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 903 440 318 82 20 chr4 41780570 41780766 -113849354 - B4A SINE B4 -21 271 64 5 903 350 356 79 33 chr4 41782224 41782465 -113847655 - MT2A LTR ERVL -72 461 210 5 903 433 345 0 7 chr4 41782488 41782628 -113847492 - MTE2b LTR MaLR -214 165 27 5 903 333 0 0 0 chr4 41782793 41782830 -113847290 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 903 713 291 0 0 chr4 41782858 41783006 -113847114 - B3A SINE B2 -39 159 12 5 903 965 256 45 5 chr4 41783004 41783224 -113846896 - B4A SINE B4 -63 229 1 5 903 1160 300 223 7 chr4 41783231 41783978 -113846142 + L2a LINE L2 2209 3116 -310 5 903 237 178 0 0 chr4 41783980 41784025 -113846095 + CT-rich Low_complexity Low_complexity 2 46 0 5 903 403 211 49 69 chr4 41784134 41784236 -113845884 - PB1D9 SINE Alu -19 101 2 5 903 970 230 0 11 chr4 41784267 41784456 -113845664 - B3A SINE B2 -5 193 7 5 903 542 286 90 10 chr4 41784459 41784660 -113845460 + L2a LINE L2 3203 3419 -7 5 903 305 343 89 12 chr4 41784906 41785154 -113844966 - ERVL-E-int LTR ERVL -1879 3788 3522 5 903 585 291 13 49 chr4 41785403 41785479 -113844641 - B3 SINE B2 0 216 146 5 903 351 0 0 0 chr4 41785479 41785518 -113844602 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 903 709 231 0 1 chr4 41785518 41785665 -113844455 - B3A SINE B2 -71 145 1 5 903 442 321 14 14 chr4 41786518 41786657 -113843463 + MER21B LTR ERV1 551 689 -174 5 903 1266 54 0 0 chr4 41787364 41787512 -113842608 + B1_Mus1 SINE Alu 1 148 0 5 903 213 132 0 0 chr4 41787512 41787550 -113842570 + (A)n Simple_repeat Simple_repeat 1 38 0 5 903 455 74 0 14 chr4 41787806 41787875 -113842245 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 903 713 244 199 44 chr4 41788309 41788397 -113841723 - MER21B LTR ERV1 -308 555 462 5 903 2257 150 43 8 chr4 41788397 41788767 -113841353 - ORR1C2 LTR MaLR -1 383 1 5 903 713 244 199 44 chr4 41788767 41788974 -113841146 - MER21B LTR ERV1 -402 461 214 5 903 423 87 0 0 chr4 41789118 41789187 -113840933 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 903 506 214 167 0 chr4 41789187 41789313 -113840807 - B3A SINE B2 -51 147 1 5 903 501 146 0 0 chr4 41789366 41789448 -113840672 + B1_Mur2 SINE Alu 68 149 0 5 903 211 220 0 17 chr4 41789835 41789874 -113840246 + (TTA)n Simple_repeat Simple_repeat 1 38 0 5 903 1149 49 7 40 chr4 41789874 41790024 -113840096 - B1_Mm SINE Alu 0 147 3 5 903 211 220 0 17 chr4 41790024 41790044 -113840076 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5 903 1917 116 92 0 chr4 41790121 41790413 -113839707 - ORR1A2 LTR MaLR -8 319 1 5 903 438 294 0 106 chr4 41790413 41790546 -113839574 + RSINE1 SINE B4 47 164 -1 5 903 950 268 22 40 chr4 41790629 41790905 -113839215 + B4A SINE B4 3 273 -19 5 903 332 43 22 0 chr4 41792538 41792584 -113837536 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 5 903 468 200 8 50 chr4 41792585 41792706 -113837414 - PB1 SINE Alu -1 126 11 5 903 268 361 72 63 chr4 41792739 41792946 -113837174 + MamRep38 DNA hAT 82 290 -5 5 903 347 316 171 56 chr4 41794248 41794423 -113835697 + L2c LINE L2 3047 3239 -148 5 903 231 125 0 0 chr4 41794423 41794463 -113835657 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 903 347 316 171 56 chr4 41794463 41794592 -113835528 + L2c LINE L2 3240 3386 -1 5 903 363 267 119 11 chr4 41797262 41797419 -113832701 - MIR SINE MIR -96 166 1 5 903 420 346 25 0 chr4 41797522 41797684 -113832436 - MIRb SINE MIR -57 211 46 5 903 234 62 0 0 chr4 41798400 41798432 -113831688 + (CACCC)n Simple_repeat Simple_repeat 1 32 0 5 903 445 409 70 29 chr4 41799277 41799519 -113830601 + MER115 DNA Tip100 144 395 -298 5 903 1005 41 0 0 chr4 41799644 41799767 -113830353 + B1_Mus2 SINE Alu 25 147 0 5 903 421 194 48 116 chr4 41799645 41799791 -113830329 + B4A SINE B4 111 246 -46 5 903 590 176 8 0 chr4 41799791 41799910 -113830210 + GA-rich Low_complexity Low_complexity 3 122 0 5 903 558 108 0 0 chr4 41800204 41800287 -113829833 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 903 441 411 36 62 chr4 41800321 41800627 -113829493 - MLT1N2 LTR MaLR -249 313 16 5 903 180 0 0 0 chr4 41800802 41800822 -113829298 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 903 512 324 92 44 chr4 41800822 41801051 -113829069 - MLT1A LTR MaLR -35 339 100 5 903 506 224 19 0 chr4 41801050 41801157 -113828963 - ID_B1 SINE B4 0 224 116 5 903 288 297 50 8 chr4 41801157 41801169 -113828951 - B1_Mus2 SINE Alu 0 147 24 5 903 1340 43 0 0 chr4 41801192 41801353 -113828767 + B2_Mm2 SINE B2 2 162 -33 5 903 348 24 0 0 chr4 41801353 41801394 -113828726 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 903 724 212 0 20 chr4 41802064 41802213 -113827907 + B1_Mur1 SINE Alu 2 147 -2 5 903 537 139 0 68 chr4 41802407 41802762 -113827358 + GA-rich Low_complexity Low_complexity 1 331 0 5 903 614 140 0 58 chr4 41802786 41802976 -113827144 + GA-rich Low_complexity Low_complexity 1 179 0 5 903 410 351 117 50 chr4 41802989 41803588 -113826532 - L2 LINE L2 -421 2998 2360 5 903 454 291 32 26 chr4 41804777 41804803 -113825317 + ID_B1 SINE B4 68 223 -1 5 903 601 202 47 0 chr4 41804803 41804932 -113825188 + B1F SINE Alu 14 148 -1 5 903 1018 143 37 37 chr4 41804950 41805139 -113824981 + B2_Mm2 SINE B2 2 190 -5 5 903 227 312 8 125 chr4 41805360 41805488 -113824632 + B1F1 SINE Alu 1 113 -36 5 903 409 141 0 23 chr4 41805605 41805692 -113824428 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 903 1092 72 14 0 chr4 41805902 41806040 -113824080 + B1_Mus1 SINE Alu 1 140 -8 5 903 1043 211 25 5 chr4 41806200 41806400 -113823720 + B3 SINE B2 11 214 -2 5 903 280 176 50 50 chr4 41806465 41806525 -113823595 - B1_Mur1 SINE Alu -2 147 88 5 903 472 239 55 178 chr4 41806473 41806692 -113823428 - ID_B1 SINE B4 -72 220 29 5 903 788 193 82 38 chr4 41806795 41806978 -113823142 + B3A SINE B2 2 192 -6 5 903 1095 223 36 0 chr4 41807629 41807876 -113822244 + Lx6 LINE L1 7179 7434 -26 5 903 545 196 164 82 chr4 41808237 41808420 -113821700 - B3A SINE B2 0 198 1 5 903 1758 229 104 27 chr4 41808435 41808955 -113821165 - Lx8 LINE L1 0 7473 6914 5 903 236 287 81 73 chr4 41809085 41809209 -113820911 + ID_B1 SINE B4 51 175 -49 5 903 409 237 20 30 chr4 41809125 41809225 -113820895 + PB1D10 SINE Alu 12 110 -7 5 903 740 212 30 0 chr4 41809236 41809368 -113820752 + B1_Mur2 SINE Alu 1 136 -13 5 903 360 0 0 0 chr4 41809369 41809409 -113820711 + (ATG)n Simple_repeat Simple_repeat 2 41 0 5 903 671 334 120 14 chr4 41810270 41810653 -113819467 + MER70A LTR ERVL 11 472 0 5 903 431 217 120 17 chr4 41811124 41811241 -113818879 - MTE2a LTR MaLR 0 379 251 5 903 705 216 145 6 chr4 41811299 41811471 -113818649 - B3A SINE B2 0 198 3 5 903 1344 46 115 0 chr4 41811557 41811731 -113818389 + B2_Mm2 SINE B2 1 194 -1 5 904 254 73 0 24 chr4 41813894 41813936 -113816184 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 904 278 261 106 64 chr4 41813951 41814045 -113816075 - RSINE1 SINE B4 -31 134 37 5 904 2688 58 3 6 chr4 41814222 41814550 -113815570 + ORR1A2 LTR MaLR 1 327 0 5 904 270 0 0 0 chr4 41814646 41814676 -113815444 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 904 432 0 0 0 chr4 41814676 41814723 -113815397 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 904 464 216 167 0 chr4 41814732 41814834 -113815286 - B4A SINE B4 -14 278 160 5 904 291 207 146 0 chr4 41814845 41814927 -113815193 - B4 SINE B4 -193 99 6 5 904 600 272 63 22 chr4 41815244 41815466 -113814654 - L1MA4 LINE L1 -365 5935 5705 5 904 409 298 15 76 chr4 41815659 41815702 -113814418 - RSINE1 SINE B4 -15 150 109 5 904 5790 142 18 8 chr4 41815702 41816651 -113813469 + RMER17B LTR ERVK 1 958 0 5 904 409 298 15 76 chr4 41816651 41816738 -113813382 - RSINE1 SINE B4 -57 108 28 5 904 222 37 0 0 chr4 41816823 41816850 -113813270 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 5 904 813 184 0 0 chr4 41816853 41816989 -113813131 - B1_Mur2 SINE Alu 0 149 14 5 904 530 259 26 39 chr4 41816989 41817006 -113813114 - ID_B1 SINE B4 0 224 74 5 904 764 203 23 28 chr4 41817374 41817551 -113812569 + ORR1A1 LTR MaLR 1 176 -170 5 904 231 288 0 0 chr4 41818343 41818409 -113811711 - Lx7 LINE L1 -16 7680 7615 5 904 588 247 49 12 chr4 41818454 41818618 -113811502 + Lx7 LINE L1 6872 7041 -655 5 904 1223 112 0 8 chr4 41818643 41819001 -113811119 + (TTCTC)n Simple_repeat Simple_repeat 1 355 0 6 904 211 40 0 0 chr4 41819001 41819026 -113811094 + (TTTCC)n Simple_repeat Simple_repeat 5 29 0 6 904 982 128 66 12 chr4 41819026 41819192 -113810928 - B2_Mm2 SINE B2 -19 176 2 6 904 2422 75 25 6 chr4 41819546 41819867 -113810253 - ORR1A2 LTR MaLR 0 327 1 6 904 281 250 130 49 chr4 41819955 41820140 -113809980 - L1MC2 LINE L1 -25 6319 6120 6 904 243 0 0 0 chr4 41820696 41820723 -113809397 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 904 266 202 239 33 chr4 41820723 41820815 -113809305 - PB1D10 SINE Alu -2 115 5 6 904 1952 243 100 26 chr4 41820989 41821071 -113809049 - Lx8 LINE L1 -7 7466 7382 6 904 2306 87 71 20 chr4 41821071 41821421 -113808699 - RLTR9A LTR ERVK 0 368 1 6 904 1952 243 100 26 chr4 41821421 41821989 -113808131 - Lx8 LINE L1 -92 7381 6768 6 904 1060 213 95 109 chr4 41821991 41822024 -113808096 - ORR1E LTR MaLR -2 357 325 6 904 780 68 0 0 chr4 41822024 41822127 -113807993 + (GGA)n Simple_repeat Simple_repeat 3 105 0 6 904 1060 213 95 109 chr4 41822127 41822431 -113807689 - ORR1E LTR MaLR -35 324 27 6 904 616 189 32 8 chr4 41822522 41822645 -113807475 - B3 SINE B2 -6 210 85 6 904 603 162 105 0 chr4 41822648 41822753 -113807367 - PB1D10 SINE Alu -1 116 1 6 904 1613 252 102 25 chr4 41822864 41823385 -113806735 + Lx8 LINE L1 6669 7229 -244 6 904 3369 220 69 75 chr4 41823406 41824477 -113805643 + RMER1B Other Other 2 1066 0 6 904 475 241 28 0 chr4 41824576 41824685 -113805435 + B4 SINE B4 84 198 -94 6 904 1058 117 12 0 chr4 41824786 41824949 -113805171 + RMER1B Other Other 593 757 -309 6 904 250 268 0 0 chr4 41824950 41825006 -113805114 - RSINE1 SINE B4 -108 57 2 6 904 293 318 36 18 chr4 41825077 41825189 -113804931 - MLT1A1 LTR MaLR -294 114 1 6 904 361 208 75 56 chr4 41825277 41825384 -113804736 - RMER1B Other Other -463 603 495 6 904 419 234 0 0 chr4 41825384 41825461 -113804659 + RSINE1 SINE B4 55 131 -34 6 904 231 321 84 24 chr4 41825710 41825793 -113804327 + MTE2a LTR MaLR 280 367 -12 6 904 365 213 0 39 chr4 41827086 41827164 -113802956 + RLTR11A2 LTR ERVK 1 75 -452 6 904 2804 219 35 47 chr4 41827168 41827941 -113802179 + MYSERV6-int LTR ERVK 8018 8781 -178 6 904 4505 14 0 0 chr4 41828036 41828529 -113801591 - MT2_Mm LTR ERVL 0 493 1 6 904 305 0 0 0 chr4 41828529 41828567 -113801553 - MERVL-int LTR ERVL 0 5485 5448 6 904 387 141 24 49 chr4 41828567 41828649 -113801471 - ORR1E-int LTR MaLR -1323 640 561 6 904 46466 14 2 0 chr4 41828649 41834007 -113796113 - MERVL-int LTR ERVL -120 5365 1 6 904 4530 12 0 0 chr4 41834007 41834500 -113795620 - MT2_Mm LTR ERVL 0 493 1 6 904 629 243 53 21 chr4 41834510 41834699 -113795421 + MYSERV-int LTR ERVK 6354 6548 -2 6 904 987 263 158 64 chr4 41834721 41835127 -113794993 + RLTR11A2 LTR ERVK 19 462 -65 6 904 1369 77 11 0 chr4 41835314 41835496 -113794624 + B2_Mm1t SINE B2 2 185 -8 6 904 414 0 0 0 chr4 41843329 41843375 -113786745 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 904 1229 54 7 0 chr4 41843403 41843550 -113786570 - B1_Mus1 SINE Alu 0 148 1 6 904 22 0 0 0 chr4 41843598 41843620 -113786500 + AT_rich Low_complexity Low_complexity 1 22 0 6 904 752 188 0 30 chr4 41843628 41843760 -113786360 - B2_Mm2 SINE B2 -66 129 2 6 904 364 270 14 0 chr4 41844260 41844334 -113785786 - B3 SINE B2 -32 184 110 6 904 21 0 0 0 chr4 41844818 41844839 -113785281 + AT_rich Low_complexity Low_complexity 1 21 0 6 904 2395 147 32 7 chr4 41844857 41845267 -113784853 - MTC LTR MaLR -21 400 1 6 904 326 294 100 95 chr4 41845536 41845935 -113784185 + RMER10A LTR ERVL 17 417 -25 6 904 3163 41 8 13 chr4 41846018 41846411 -113783709 - L1Md_F2 LINE L1 0 6582 6192 6 904 2241 140 6 0 chr4 41846579 41846921 -113783199 - RLTR14 LTR ERV1 -35 347 4 6 904 324 0 0 0 chr4 41847249 41847285 -113782835 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 904 1922 117 149 20 chr4 41847482 41847830 -113782290 - ORR1B1 LTR MaLR 0 394 2 6 904 414 0 0 0 chr4 41847830 41847876 -113782244 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 904 25 31 0 0 chr4 41847918 41847950 -113782170 + AT_rich Low_complexity Low_complexity 1 32 0 6 904 1675 159 107 9 chr4 41848090 41848408 -113781712 + ORR1B1 LTR MaLR 41 389 -5 6 904 231 301 33 66 chr4 41848586 41848624 -113781496 + ORR1D1 LTR MaLR 245 280 -94 6 904 488 249 151 102 chr4 41848624 41848830 -113781290 + B3 SINE B2 1 216 0 6 904 231 301 33 66 chr4 41848830 41848912 -113781208 + ORR1D1 LTR MaLR 281 361 -13 6 904 183 400 0 0 chr4 41848927 41848992 -113781128 - L2 LINE L2 -1754 1665 1601 6 904 689 317 95 45 chr4 41849402 41849495 -113780625 + ORR1E LTR MaLR 6 92 -267 6 904 1447 105 17 48 chr4 41849495 41849725 -113780395 - URR1B DNA MER1_type 0 225 3 6 904 689 317 95 45 chr4 41849725 41849968 -113780152 + ORR1E LTR MaLR 93 359 0 6 904 269 51 26 0 chr4 41850075 41850114 -113780006 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 904 3656 58 6 29 chr4 41850119 41850598 -113779522 - L1_Mus2 LINE L1 -1 6565 6098 6 904 780 204 46 82 chr4 41851444 41851734 -113778386 + B4A SINE B4 7 292 0 6 904 372 22 0 0 chr4 41851766 41851811 -113778309 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 6 904 349 240 13 0 chr4 41852327 41852402 -113777718 + PB1D10 SINE Alu 5 80 -37 6 904 1406 236 83 41 chr4 41852410 41852773 -113777347 + MTD LTR MaLR 38 415 -4 6 904 246 315 0 14 chr4 41852777 41852851 -113777269 + GA-rich Low_complexity Low_complexity 3 75 0 6 904 839 238 48 5 chr4 41854100 41854286 -113775834 + B3A SINE B2 1 194 -4 6 904 24 67 0 0 chr4 41854289 41854334 -113775786 + AT_rich Low_complexity Low_complexity 1 45 0 6 904 25 0 0 0 chr4 41854471 41854496 -113775624 + AT_rich Low_complexity Low_complexity 1 25 0 6 904 448 273 24 78 chr4 41854520 41854687 -113775433 - RSINE1 SINE B4 -3 162 5 6 904 295 330 43 9 chr4 41855261 41855377 -113774743 + ORR1E LTR MaLR 1 120 -239 6 904 768 246 78 29 chr4 41855654 41855859 -113774261 - B3 SINE B2 -1 215 1 6 904 875 307 92 66 chr4 41855916 41856446 -113773674 - ORR1E-int LTR MaLR -868 712 169 6 904 263 195 188 35 chr4 41856468 41856553 -113773567 - RMER10A LTR ERVL -27 415 318 6 904 369 0 0 0 chr4 41856762 41856803 -113773317 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 904 535 261 32 53 chr4 41857006 41857196 -113772924 - ORR1E-int LTR MaLR -1394 186 1 6 904 298 241 34 22 chr4 41857197 41857286 -113772834 - ORR1E LTR MaLR -1 369 280 6 904 316 301 94 31 chr4 41857388 41857515 -113772605 - ORR1E LTR MaLR -221 138 4 6 904 198 224 0 0 chr4 41857539 41857588 -113772532 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 6 904 738 211 0 0 chr4 41857596 41857776 -113772344 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 904 735 333 73 17 chr4 41857801 41858103 -113772017 - MLT2F LTR ERVL -84 579 261 6 904 402 280 103 14 chr4 41858205 41858350 -113771770 - Tigger7 DNA MER2_type -26 2465 2308 6 904 615 297 104 43 chr4 41858350 41858963 -113771157 + L1M5 LINE L1 2156 2808 -3338 6 904 326 292 58 6 chr4 41859039 41859211 -113770909 + L1M5 LINE L1 5094 5274 -872 6 904 657 256 66 10 chr4 41859242 41859435 -113770685 + B4A SINE B4 27 230 -62 6 904 669 245 72 7 chr4 41859435 41859587 -113770533 + RSINE1 SINE B4 3 164 -1 6 904 383 238 81 8 chr4 41859655 41859778 -113770342 + L1M5 LINE L1 5358 5489 -690 6 904 1113 188 14 24 chr4 41859778 41859990 -113770130 + B3 SINE B2 6 215 -1 6 904 776 65 0 9 chr4 41860010 41860118 -113770002 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 6 904 482 323 61 9 chr4 41860138 41860366 -113769754 + L1M5 LINE L1 5511 5750 -429 6 904 224 194 0 0 chr4 41860838 41860874 -113769246 + polypurine Low_complexity Low_complexity 2 37 0 6 904 218 89 44 0 chr4 41860995 41861040 -113769080 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 904 231 36 0 0 chr4 41861134 41861162 -113768958 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 904 275 391 8 0 chr4 41861838 41861966 -113768154 + MLT1A0 LTR MaLR 117 245 -120 6 904 613 173 65 13 chr4 41861986 41862145 -113767975 - RMER1B Other Other 0 1066 850 6 904 200 91 22 43 chr4 41862167 41862213 -113767907 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 6 904 1356 212 201 8 chr4 41862223 41862802 -113767318 - RMER1B Other Other -362 704 86 6 904 4524 109 32 18 chr4 41863006 41863724 -113766396 + RMER6A LTR ERVK 1 728 -28 6 904 344 231 25 13 chr4 41863890 41863969 -113766151 - PB1 SINE Alu -7 120 41 6 904 3272 53 179 2 chr4 41864072 41864507 -113765613 - RLTR1B LTR ERV1 0 512 1 6 904 1242 111 33 0 chr4 41864894 41865075 -113765045 - B2_Mm2 SINE B2 -8 187 1 6 904 936 182 5 43 chr4 41865198 41865382 -113764738 - B3 SINE B2 -20 196 20 6 904 297 186 0 28 chr4 41865535 41865607 -113764513 - L1M LINE L1 -772 5407 5338 6 904 13814 76 27 12 chr4 41865697 41867934 -113762186 + L1VL2 LINE L1 716 2987 -628 6 904 374 350 104 60 chr4 41868112 41868698 -113761422 + MuLV-int LTR ERV1 1804 2415 -5191 6 904 531 372 3 3 chr4 41868754 41869037 -113761083 + MuLV-int LTR ERV1 3991 4273 -3333 6 904 2098 263 12 4 chr4 41869432 41869921 -113760199 + MuRRS4-int LTR ERV1 3533 4025 -1038 6 904 548 308 22 22 chr4 41870700 41870938 -113759182 + RLTR6-int LTR ERV1 7476 7688 -90 6 904 2510 113 170 3 chr4 41871037 41871419 -113758701 + RLTR41 LTR ERV1 1 446 0 6 904 403 331 57 57 chr4 41871522 41871714 -113758406 - B3A SINE B2 -1 197 6 6 904 342 226 163 44 chr4 41871715 41871942 -113758178 - L1MD2 LINE L1 -923 5621 5368 6 904 282 310 154 18 chr4 41872007 41872293 -113757827 - L1MD2 LINE L1 -1141 5403 5079 6 904 323 269 13 0 chr4 41872393 41872471 -113757649 + ID4 SINE ID 2 80 -3 6 904 625 273 198 19 chr4 41872487 41872789 -113757331 + MTEa LTR MaLR 1 338 -21 6 904 818 288 44 13 chr4 41872868 41873271 -113756849 - L1MD2 LINE L1 -4555 2085 1639 6 904 852 164 29 0 chr4 41873283 41873423 -113756697 - B1_Mur2 SINE Alu -5 144 1 6 904 1150 307 78 9 chr4 41873540 41874106 -113756014 - L1MD2 LINE L1 -5514 1126 505 6 904 270 351 88 22 chr4 41874142 41874279 -113755841 - L1MD2 LINE L1 -6221 326 181 6 904 840 144 53 0 chr4 41874757 41874889 -113755231 + B1_Mm SINE Alu 1 139 -8 6 904 1023 75 0 0 chr4 41874889 41875035 -113755085 + (GGA)n Simple_repeat Simple_repeat 2 147 0 6 904 303 71 0 0 chr4 41875037 41875079 -113755041 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 6 904 1227 180 9 9 chr4 41875296 41875509 -113754611 + B3 SINE B2 1 213 -3 6 904 780 172 31 0 chr4 41875551 41875714 -113754406 + Lx5 LINE L1 6880 7047 -3 7 904 839 240 51 101 chr4 41875877 41876195 -113753925 + ORR1E LTR MaLR 4 303 -56 7 904 875 132 13 53 chr4 41876195 41876347 -113753773 - B1_Mus2 SINE Alu -1 146 1 7 904 839 240 51 101 chr4 41876347 41876403 -113753717 + ORR1E LTR MaLR 304 359 0 7 904 201 39 0 0 chr4 41876840 41876866 -113753254 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 904 340 142 0 39 chr4 41876881 41876948 -113753172 - B2_Mm2 SINE B2 -107 109 47 7 904 1208 124 11 0 chr4 41877014 41877191 -113752929 - B2_Mm1t SINE B2 -14 179 1 7 904 447 196 118 5 chr4 41877555 41877661 -113752459 + B1_Mur3 SINE Alu 7 119 -30 7 904 719 261 57 0 chr4 41877666 41877823 -113752297 - B3 SINE B2 -50 166 1 7 904 2673 58 3 6 chr4 41878525 41878853 -113751267 + ORR1A2 LTR MaLR 1 327 0 7 904 429 20 0 0 chr4 41878951 41879001 -113751119 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 904 324 0 0 0 chr4 41879001 41879036 -113751084 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 904 466 216 167 0 chr4 41879045 41879147 -113750973 - B4A SINE B4 -14 278 160 7 904 285 207 146 0 chr4 41879158 41879240 -113750880 - B4 SINE B4 -193 99 6 7 904 632 272 63 22 chr4 41879557 41879779 -113750341 - L1MA4 LINE L1 -365 5935 5705 7 904 444 313 7 64 chr4 41879972 41880015 -113750105 - RSINE1 SINE B4 -15 150 109 7 904 5373 143 43 5 chr4 41880015 41880938 -113749182 + RMER17B LTR ERVK 1 958 0 7 904 444 313 7 64 chr4 41880938 41881034 -113749086 - RSINE1 SINE B4 -57 108 19 7 904 838 176 0 0 chr4 41881114 41881250 -113748870 - B1_Mur2 SINE Alu 0 149 14 7 904 574 245 26 39 chr4 41881250 41881267 -113748853 - ID_B1 SINE B4 0 224 74 7 904 2232 126 12 3 chr4 41881636 41881979 -113748141 + ORR1A1 LTR MaLR 1 346 0 7 904 1159 69 0 7 chr4 41882352 41882498 -113747622 + B1_Mus2 SINE Alu 3 147 0 7 904 443 259 86 0 chr4 41882550 41882666 -113747454 + B1_Mur1 SINE Alu 24 149 0 7 904 2371 58 0 0 chr4 41882671 41882965 -113747155 + L1Md_F2 LINE L1 6278 6571 -11 7 904 345 47 0 0 chr4 41882970 41883013 -113747107 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 7 904 238 148 18 18 chr4 41883015 41883070 -113747050 + G-rich Low_complexity Low_complexity 5 59 0 7 904 214 216 19 19 chr4 41883779 41883831 -113746289 + CT-rich Low_complexity Low_complexity 2 53 0 7 904 549 0 0 0 chr4 41884735 41884796 -113745324 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 904 652 124 29 0 chr4 41884798 41884903 -113745217 - B1_Mus2 SINE Alu 0 147 40 7 904 198 36 32 113 chr4 41884905 41885090 -113745030 + CT-rich Low_complexity Low_complexity 3 172 0 7 904 896 157 34 34 chr4 41885090 41885323 -113744797 + (TCTCTG)n Simple_repeat Simple_repeat 1 233 0 7 904 507 278 21 24 chr4 41885270 41885484 -113744636 + C-rich Low_complexity Low_complexity 1 213 0 7 904 278 263 43 65 chr4 41885488 41885500 -113744620 - ID_B1 SINE B4 -67 157 141 7 904 367 152 0 33 chr4 41885500 41885561 -113744559 - B1_Mur4 SINE Alu -90 60 2 7 904 278 263 43 65 chr4 41885561 41885646 -113744474 - ID_B1 SINE B4 -67 140 9 7 904 1021 240 108 4 chr4 41885767 41886018 -113744102 + B4A SINE B4 2 278 -14 7 904 1286 73 5 5 chr4 41886022 41886243 -113743877 + (CA)n Simple_repeat Simple_repeat 1 221 0 7 904 1251 228 135 40 chr4 41886334 41886524 -113743596 - MTD LTR MaLR -14 405 197 7 904 1347 86 0 0 chr4 41886524 41886704 -113743416 + (TG)n Simple_repeat Simple_repeat 1 182 -184 7 904 1347 86 0 0 chr4 41886710 41886890 -113743230 + (TG)n Simple_repeat Simple_repeat 183 366 0 7 904 1251 228 135 40 chr4 41886890 41887062 -113743058 - MTD LTR MaLR -227 192 1 7 904 319 73 0 0 chr4 41887152 41887193 -113742927 + B1_Mus2 SINE Alu 1 41 -106 7 904 1050 157 87 43 chr4 41887287 41887494 -113742626 - B3 SINE B2 0 216 1 7 904 239 229 43 0 chr4 41887704 41887774 -113742346 - L1M4b LINE L1 -4276 3058 2986 7 904 262 323 43 0 chr4 41887842 41887872 -113742248 - BC1_Mm scRNA scRNA -48 104 8 7 904 362 206 0 0 chr4 41887872 41887935 -113742185 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 7 904 441 0 0 0 chr4 41888720 41888769 -113741351 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 904 1218 170 63 0 chr4 41889098 41889304 -113740816 - MTC LTR MaLR 0 421 203 7 904 603 0 0 0 chr4 41889304 41889371 -113740749 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 7 904 21 0 0 0 chr4 41889395 41889416 -113740704 + AT_rich Low_complexity Low_complexity 1 21 0 7 904 296 35 0 50 chr4 41889417 41889477 -113740643 - B2_Mm2 SINE B2 -2 193 137 7 904 1325 90 6 6 chr4 41889544 41889722 -113740398 - B2_Mm1t SINE B2 -14 179 2 7 904 2103 136 89 17 chr4 41889743 41889847 -113740273 - Lx5 LINE L1 -4 7054 6916 7 904 180 0 0 0 chr4 41889847 41889867 -113740253 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 904 2103 156 50 0 chr4 41889867 41890166 -113739954 - Lx5 LINE L1 -135 6915 6599 7 904 1382 129 5 5 chr4 41890166 41890377 -113739743 - MTC LTR MaLR -210 211 1 7 904 1241 246 22 29 chr4 41890842 41891114 -113739006 + B4 SINE B4 2 271 -21 7 904 450 0 0 0 chr4 41891120 41891170 -113738950 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 904 1988 112 79 38 chr4 41891354 41891697 -113738423 + ORR1B2 LTR MaLR 3 359 -8 7 904 539 236 17 7 chr4 41891852 41891981 -113738139 + MTC LTR MaLR 1 120 -299 7 904 744 201 14 27 chr4 41892338 41892486 -113737634 + B1_Mus1 SINE Alu 2 147 -1 7 904 1673 191 10 10 chr4 41892685 41892997 -113737123 + MTC LTR MaLR 110 421 0 7 904 226 185 0 278 chr4 41893145 41893235 -113736885 - ORR1C1 LTR MaLR -313 65 1 7 904 307 292 30 148 chr4 41893243 41893355 -113736765 - L1M5 LINE L1 -974 5172 5078 7 904 288 270 14 0 chr4 41893355 41893429 -113736691 + ID4 SINE ID 2 76 -7 7 904 307 292 30 148 chr4 41893429 41893485 -113736635 - L1M5 LINE L1 -1069 5077 5024 7 904 236 221 20 131 chr4 41893517 41893616 -113736504 - MLT1A1 LTR MaLR -5 403 316 7 904 421 177 241 0 chr4 41893844 41893985 -113736135 - Lx9 LINE L1 -21 7623 7449 7 904 467 229 111 0 chr4 41893983 41894127 -113735993 + Lx9 LINE L1 7258 7417 -227 7 904 824 236 55 6 chr4 41894406 41894589 -113735531 - MTD LTR MaLR -2 417 226 7 904 500 127 38 0 chr4 41894586 41894665 -113735455 - MTD LTR MaLR -337 82 1 7 904 246 116 0 0 chr4 41894874 41894917 -113735203 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 904 618 229 25 0 chr4 41896028 41896150 -113733970 + B1_Mur1 SINE Alu 7 131 -18 7 904 3278 14 0 11 chr4 41898810 41899181 -113730939 + IAPLTR1_Mm LTR ERVK 1 367 0 7 904 20561 32 50 0 chr4 41899181 41901716 -113728404 + IAPEz-int LTR ERVK 8 2670 -3811 7 904 8966 31 2 5 chr4 41901694 41902779 -113727341 + IAPEz-int LTR ERVK 5400 6481 0 7 904 3252 16 0 11 chr4 41902779 41903150 -113726970 + IAPLTR1_Mm LTR ERVK 1 367 0 7 904 1375 77 11 0 chr4 41909376 41909558 -113720562 - B2_Mm1t SINE B2 -8 185 2 7 904 985 263 158 64 chr4 41909745 41910151 -113719969 - RLTR11A2 LTR ERVK -65 462 19 7 904 596 249 53 21 chr4 41910173 41910362 -113719758 - MYSERV-int LTR ERVK -2 6548 6354 7 904 2818 218 35 44 chr4 41910462 41911233 -113718887 - MYSERV6-int LTR ERVK -178 8781 8018 7 904 365 213 0 39 chr4 41911237 41911315 -113718805 - RLTR11A2 LTR ERVK -452 75 1 7 904 315 0 0 0 chr4 41912232 41912267 -113717853 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 904 244 321 84 24 chr4 41912624 41912707 -113717413 - MTE2a LTR MaLR -12 367 280 7 904 419 234 0 0 chr4 41912956 41913033 -113717087 - RSINE1 SINE B4 -34 131 55 7 904 361 208 75 56 chr4 41913033 41913140 -113716980 + RMER1B Other Other 495 603 -463 7 904 293 318 36 18 chr4 41913228 41913340 -113716780 + MLT1A1 LTR MaLR 1 114 -294 7 904 250 268 0 0 chr4 41913411 41913467 -113716653 + RSINE1 SINE B4 2 57 -108 7 904 1058 117 12 0 chr4 41913468 41913631 -113716489 - RMER1B Other Other -309 757 593 7 904 475 241 28 0 chr4 41913732 41913841 -113716279 - B4 SINE B4 -94 198 84 7 904 3362 223 67 75 chr4 41913940 41915014 -113715106 - RMER1B Other Other 0 1066 2 7 904 1587 254 102 25 chr4 41915035 41915556 -113714564 - Lx8 LINE L1 -244 7229 6669 7 904 591 171 105 0 chr4 41915669 41915774 -113714346 + PB1D10 SINE Alu 1 116 -1 7 904 616 189 32 8 chr4 41915777 41915900 -113714220 + B3 SINE B2 85 210 -6 7 904 1068 213 95 109 chr4 41915991 41916295 -113713825 + ORR1E LTR MaLR 25 312 -47 7 904 861 62 0 0 chr4 41916295 41916407 -113713713 + (TCC)n Simple_repeat Simple_repeat 3 114 0 7 904 1068 213 95 109 chr4 41916407 41916440 -113713680 + ORR1E LTR MaLR 313 356 -3 7 904 1993 239 102 26 chr4 41916442 41917009 -113713111 + Lx8 LINE L1 6768 7381 -92 7 904 2283 90 71 20 chr4 41917009 41917359 -113712761 + RLTR9A LTR ERVK 1 368 0 7 904 1993 239 102 26 chr4 41917359 41917441 -113712679 + Lx8 LINE L1 7382 7466 -7 7 904 240 214 239 33 chr4 41917615 41917707 -113712413 + PB1D10 SINE Alu 5 115 -2 7 904 243 0 0 0 chr4 41917707 41917734 -113712386 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 904 281 250 130 49 chr4 41918290 41918475 -113711645 + L1MC2 LINE L1 6120 6319 -25 7 904 2424 75 25 6 chr4 41918569 41918890 -113711230 + ORR1A2 LTR MaLR 1 327 0 7 904 993 135 67 11 chr4 41919244 41919399 -113710721 + B2_Mm2 SINE B2 2 165 -30 7 904 974 148 0 6 chr4 41919399 41919576 -113710544 + A-rich Low_complexity Low_complexity 4 179 0 7 904 993 135 67 11 chr4 41919576 41919600 -113710520 + B2_Mm2 SINE B2 166 190 -5 7 904 588 247 49 12 chr4 41919608 41919772 -113710348 - Lx7 LINE L1 -655 7041 6872 7 904 231 288 0 0 chr4 41919817 41919883 -113710237 + Lx7 LINE L1 7615 7680 -16 7 904 771 198 23 28 chr4 41920676 41920853 -113709267 - ORR1A1 LTR MaLR -170 176 1 7 904 518 265 26 39 chr4 41921222 41921239 -113708881 + ID_B1 SINE B4 74 224 0 7 904 787 199 0 0 chr4 41921239 41921375 -113708745 + B1_Mur2 SINE Alu 14 149 0 7 904 22 0 0 0 chr4 41921392 41921414 -113708706 + AT_rich Low_complexity Low_complexity 1 22 0 7 904 394 306 15 76 chr4 41921485 41921572 -113708548 + RSINE1 SINE B4 28 110 -55 7 904 5732 147 18 8 chr4 41921572 41922521 -113707599 - RMER17B LTR ERVK 0 958 1 7 904 394 306 15 76 chr4 41922521 41922564 -113707556 + RSINE1 SINE B4 111 150 -15 7 904 600 272 63 22 chr4 41922757 41922979 -113707141 + L1MA4 LINE L1 5705 5935 -365 7 904 291 207 146 0 chr4 41923296 41923378 -113706742 + B4 SINE B4 6 99 -193 7 904 464 216 167 0 chr4 41923389 41923491 -113706629 + B4A SINE B4 160 278 -14 7 904 432 0 0 0 chr4 41923500 41923548 -113706572 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 904 360 0 0 0 chr4 41923548 41923587 -113706533 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 904 2688 58 3 6 chr4 41923683 41924011 -113706109 - ORR1A2 LTR MaLR 0 327 1 8 904 278 261 106 64 chr4 41924188 41924282 -113705838 + RSINE1 SINE B4 37 134 -31 8 904 203 61 0 29 chr4 41924297 41924331 -113705789 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 904 201 320 0 0 chr4 41925340 41925415 -113704705 + C-rich Low_complexity Low_complexity 5 79 0 8 904 1291 63 51 0 chr4 41926484 41926659 -113703461 - B2_Mm2 SINE B2 -11 184 1 8 904 669 210 173 6 chr4 41926745 41926913 -113703207 + B3A SINE B2 3 198 0 8 904 431 229 122 18 chr4 41926949 41927089 -113703031 + MTE2a LTR MaLR 223 379 0 8 904 681 329 120 14 chr4 41927566 41927949 -113702171 - MER70A LTR ERVL 0 472 11 8 904 233 234 83 21 chr4 41928442 41928538 -113701582 - MER90a LTR ERV1 -512 102 1 8 904 306 0 0 0 chr4 41928810 41928844 -113701276 + (CAT)n Simple_repeat Simple_repeat 2 35 0 8 904 723 220 30 0 chr4 41928845 41928977 -113701143 - B1_Mur2 SINE Alu -13 136 1 8 904 409 237 20 30 chr4 41928988 41929088 -113701032 - PB1D10 SINE Alu -7 110 12 8 904 236 287 81 73 chr4 41929004 41929128 -113700992 - ID_B1 SINE B4 -49 175 51 8 904 1614 225 98 77 chr4 41929258 41929806 -113700314 + Lx8 LINE L1 6914 7473 0 8 904 525 241 130 54 chr4 41929821 41930005 -113700115 + B3A SINE B2 1 198 0 8 904 1095 223 36 0 chr4 41930366 41930613 -113699507 - Lx6 LINE L1 -26 7434 7179 8 904 186 103 0 0 chr4 41931283 41931312 -113698808 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 904 750 179 8 0 chr4 41931326 41931449 -113698671 - B3A SINE B2 -73 125 2 8 904 454 259 61 26 chr4 41931552 41931667 -113698453 + ID_B1 SINE B4 29 147 -77 8 904 357 286 0 67 chr4 41931689 41931794 -113698326 + ID_B1 SINE B4 125 222 -2 8 904 1043 211 25 5 chr4 41931862 41932062 -113698058 - B3 SINE B2 -2 214 11 8 904 1103 65 14 0 chr4 41932223 41932361 -113697759 - B1_Mus1 SINE Alu -8 140 1 8 904 484 121 0 21 chr4 41932575 41932668 -113697452 + (TA)n Simple_repeat Simple_repeat 2 92 0 8 904 210 321 8 125 chr4 41932785 41932913 -113697207 - B1F1 SINE Alu -36 113 1 8 904 1010 144 37 37 chr4 41933134 41933322 -113696798 - B2_Mm2 SINE B2 -6 189 2 8 904 579 209 47 0 chr4 41933340 41933469 -113696651 - B1F SINE Alu -1 148 14 8 904 432 298 32 26 chr4 41933469 41933495 -113696625 - ID_B1 SINE B4 -1 223 68 8 904 1430 40 0 6 chr4 41933891 41934066 -113696054 - B2_Mm2 SINE B2 -20 175 2 8 904 506 224 19 0 chr4 41934101 41934208 -113695912 + ID_B1 SINE B4 116 224 0 8 904 375 41 0 0 chr4 41934289 41934338 -113695782 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 904 515 248 8 17 chr4 41934347 41934466 -113695654 + MLT1A LTR MaLR 226 343 -31 8 904 439 418 36 62 chr4 41934653 41934959 -113695161 + MLT1N2 LTR MaLR 16 313 -249 8 904 459 152 0 0 chr4 41934993 41935072 -113695048 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 8 904 629 234 0 12 chr4 41935366 41935535 -113694585 + CT-rich Low_complexity Low_complexity 4 170 0 8 904 1005 41 0 0 chr4 41935540 41935663 -113694457 - B1_Mus2 SINE Alu 0 147 25 8 904 437 395 82 26 chr4 41935788 41935983 -113694137 - MER115 DNA Tip100 -298 395 190 8 904 189 74 0 0 chr4 41936875 41936902 -113693218 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 8 904 420 346 25 0 chr4 41937620 41937782 -113692338 + MIRb SINE MIR 46 211 -57 8 904 371 259 119 11 chr4 41937886 41938043 -113692077 + MIR SINE MIR 1 166 -96 8 904 333 336 157 43 chr4 41940714 41940843 -113689277 - L2c LINE L2 -1 3386 3241 8 904 264 100 0 0 chr4 41940843 41940883 -113689237 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 904 333 336 157 43 chr4 41940883 41941058 -113689062 - L2c LINE L2 -147 3240 3047 8 904 268 361 72 63 chr4 41942359 41942566 -113687554 - MamRep38 DNA hAT -5 290 82 8 904 472 192 18 54 chr4 41942599 41942724 -113687396 + PB1 SINE Alu 11 126 -1 8 904 305 47 23 0 chr4 41942724 41942767 -113687353 + (CAAAC)n Simple_repeat Simple_repeat 5 48 0 8 905 950 268 22 40 chr4 41944388 41944664 -113685456 - B4A SINE B4 -19 273 3 8 905 438 294 0 106 chr4 41944747 41944880 -113685240 - RSINE1 SINE B4 -1 164 47 8 905 1917 116 92 0 chr4 41944880 41945172 -113684948 + ORR1A2 LTR MaLR 1 319 -8 8 905 1162 42 7 40 chr4 41945269 41945419 -113684701 + B1_Mm SINE Alu 3 147 0 8 905 189 0 0 0 chr4 41945433 41945454 -113684666 + (TAA)n Simple_repeat Simple_repeat 2 22 0 8 905 501 146 0 0 chr4 41945846 41945928 -113684192 - B1_Mur2 SINE Alu 0 149 68 8 905 506 214 167 0 chr4 41945981 41946107 -113684013 + B3A SINE B2 1 147 -51 8 905 495 78 0 0 chr4 41946107 41946184 -113683936 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 905 716 244 199 44 chr4 41946328 41946535 -113683585 + MER21B LTR ERV1 214 461 -402 8 905 2284 147 43 8 chr4 41946535 41946905 -113683215 + ORR1C2 LTR MaLR 1 383 -1 8 905 716 244 199 44 chr4 41946905 41946993 -113683127 + MER21B LTR ERV1 462 555 -308 8 905 527 66 0 13 chr4 41947426 41947503 -113682617 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 905 204 125 0 0 chr4 41947759 41947791 -113682329 + (T)n Simple_repeat Simple_repeat 1 32 0 8 905 1236 61 0 0 chr4 41947797 41947945 -113682175 - B1_Mus1 SINE Alu 0 148 1 8 905 442 321 14 14 chr4 41948652 41948791 -113681329 - MER21B LTR ERV1 -174 689 551 8 905 709 229 0 0 chr4 41949644 41949788 -113680332 + B3A SINE B2 1 144 -54 8 905 387 0 0 0 chr4 41949791 41949834 -113680286 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 905 234 137 58 19 chr4 41949858 41949938 -113680182 + (CAAAC)n Simple_repeat Simple_repeat 1 83 0 8 905 319 339 89 12 chr4 41950163 41950411 -113679709 + ERVL-E-int LTR ERVL 3522 3788 -1879 8 905 542 286 90 10 chr4 41950657 41950858 -113679262 - L2a LINE L2 -7 3419 3203 8 905 947 235 0 11 chr4 41950861 41951050 -113679070 + B3A SINE B2 7 193 -5 8 905 403 211 49 69 chr4 41951081 41951183 -113678937 + PB1D9 SINE Alu 2 101 -19 8 905 468 150 0 0 chr4 41951294 41951374 -113678746 + (GA)n Simple_repeat Simple_repeat 2 81 0 8 905 1160 298 231 7 chr4 41951388 41952101 -113678019 - L2a LINE L2 -339 3080 2208 8 905 948 260 45 5 chr4 41952107 41952327 -113677793 + B4A SINE B4 1 229 -63 8 905 713 291 0 0 chr4 41952325 41952473 -113677647 + B3A SINE B2 12 159 -39 8 905 279 0 0 0 chr4 41952501 41952532 -113677588 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 905 442 338 0 7 chr4 41952697 41952837 -113677283 + MTE2b LTR MaLR 27 165 -214 8 905 373 352 80 25 chr4 41952860 41953099 -113677021 + MT2A LTR ERVL 210 461 -72 8 905 236 349 26 35 chr4 41954404 41954517 -113675603 - MTE-int LTR MaLR -475 1105 994 8 905 295 294 58 93 chr4 41954508 41954647 -113675473 + MTE2b LTR MaLR 242 375 -4 8 905 307 212 8 117 chr4 41954673 41954801 -113675319 + Lx5 LINE L1 6906 7044 -14 8 905 703 224 28 0 chr4 41963807 41963950 -113666170 + B1_Mur1 SINE Alu 2 148 -1 8 905 397 284 104 59 chr4 41964457 41964745 -113665375 + L2 LINE L2 2383 2683 -736 8 905 924 256 5 42 chr4 41965165 41965381 -113664739 + B3 SINE B2 2 209 -7 8 905 1293 28 0 0 chr4 41965619 41965764 -113664356 - B1_Mus2 SINE Alu -1 146 2 8 905 268 242 58 39 chr4 41966019 41966122 -113663998 - MER65-int LTR ERV1 -2854 2017 1913 8 905 984 199 78 0 chr4 41966143 41966334 -113663786 - B3 SINE B2 -10 206 1 8 905 644 229 7 27 chr4 41966509 41966525 -113663595 - B1_Mm SINE Alu 0 147 135 8 905 432 0 0 0 chr4 41966525 41966573 -113663547 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 905 644 229 7 27 chr4 41966573 41966704 -113663416 - B1_Mm SINE Alu -13 134 4 8 905 1078 95 0 26 chr4 41966733 41966884 -113663236 - B1_Mus2 SINE Alu 0 147 1 8 905 839 193 25 6 chr4 41967101 41967278 -113662842 - B3 SINE B2 -3 190 1 8 905 333 68 0 0 chr4 41968107 41968151 -113661969 + (CATA)n Simple_repeat Simple_repeat 2 45 0 8 905 310 154 0 19 chr4 41968153 41968206 -113661914 + HAL1-3A_ME LINE L1 1976 2027 -831 8 905 594 184 0 0 chr4 41968206 41968331 -113661789 + (CA)n Simple_repeat Simple_repeat 1 125 0 8 905 228 279 16 0 chr4 41968401 41968462 -113661658 - LTR73 LTR ERV1 -488 84 23 8 905 293 349 118 33 chr4 41968675 41968945 -113661175 - L2 LINE L2 -1216 2203 1911 8 905 639 104 8 17 chr4 41968994 41969111 -113661009 + (GA)n Simple_repeat Simple_repeat 1 116 0 8 905 872 73 97 0 chr4 41970505 41970629 -113659491 + B1_Mus1 SINE Alu 13 148 0 8 905 213 159 0 0 chr4 41970631 41970675 -113659445 + A-rich Low_complexity Low_complexity 1 44 0 8 905 763 268 60 16 chr4 41970810 41971060 -113659060 + Lx8 LINE L1 7136 7396 -77 8 905 2277 123 9 63 chr4 41971063 41971506 -113658614 - IAPLTR2a LTR ERVK -6 405 1 8 905 25012 21 7 2 chr4 41971506 41974450 -113655670 - IAPEz-int LTR ERVK 0 6481 3525 8 905 903 80 24 0 chr4 41974450 41974575 -113655545 - IAPEz-int LTR ERVK -2770 4910 4783 8 905 1808 89 0 0 chr4 41974570 41974816 -113655304 - IAPEz-int LTR ERVK -5183 2497 2252 8 905 901 59 0 8 chr4 41974817 41974937 -113655183 - IAPEz-int LTR ERVK -5004 1477 1359 8 905 3423 81 17 14 chr4 41974937 41975663 -113654457 - IAPEz-int LTR ERVK -5819 662 8 8 905 2280 128 14 77 chr4 41975663 41976118 -113654002 - IAPLTR2a LTR ERVK 0 411 1 8 905 684 222 22 0 chr4 41977061 41977196 -113652924 - B1_Mur1 SINE Alu -5 144 7 8 905 382 302 28 35 chr4 41979909 41980053 -113650067 - MER5A DNA MER1_type -26 163 21 8 905 1077 310 59 34 chr4 41980144 41980552 -113649568 - MT2A LTR ERVL -8 525 108 8 905 406 336 7 87 chr4 41980633 41980783 -113649337 + B4 SINE B4 2 139 -153 8 905 295 298 0 45 chr4 41980801 41980889 -113649231 + RSINE1 SINE B4 82 165 0 8 905 537 30 0 0 chr4 41980889 41980956 -113649164 + (TC)n Simple_repeat Simple_repeat 1 67 0 8 905 252 0 0 0 chr4 41980956 41980983 -113649137 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 905 367 258 53 11 chr4 41981047 41981141 -113648979 - MTEa LTR MaLR -279 100 3 9 905 248 319 10 60 chr4 41981144 41981244 -113648876 + B3 SINE B2 27 121 -95 9 905 251 350 55 99 chr4 41981258 41981290 -113648830 + B4A SINE B4 73 170 -122 9 905 579 190 71 47 chr4 41981290 41981417 -113648703 + B1_Mur1 SINE Alu 12 141 -8 9 905 251 350 55 99 chr4 41981417 41981439 -113648681 + B4A SINE B4 171 245 -47 9 905 411 40 0 0 chr4 41981439 41981489 -113648631 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 9 905 837 161 0 0 chr4 41981489 41981638 -113648482 + GA-rich Low_complexity Low_complexity 2 150 0 9 905 201 74 0 0 chr4 41981753 41981780 -113648340 + (A)n Simple_repeat Simple_repeat 1 27 0 9 905 682 175 78 16 chr4 41981793 41981921 -113648199 - B1_Mur2 SINE Alu 0 149 14 9 905 340 282 13 0 chr4 41982231 41982309 -113647811 + B1_Mus2 SINE Alu 1 79 -68 9 905 352 304 94 59 chr4 41982321 41982576 -113647544 + L1M4 LINE L1 988 1251 -5291 9 905 273 282 58 6 chr4 41982630 41982726 -113647394 + PB1D7 SINE Alu 4 100 -20 9 905 245 301 14 0 chr4 41982661 41982734 -113647386 + ID_B1 SINE B4 113 186 -38 9 905 488 250 53 53 chr4 41982825 41982970 -113647150 + L1M4 LINE L1 3568 3712 -2929 9 905 414 0 0 0 chr4 41982970 41983016 -113647104 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 905 432 0 0 0 chr4 41983094 41983142 -113646978 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 905 570 204 203 7 chr4 41983154 41983292 -113646828 + B3 SINE B2 8 172 -44 9 905 450 53 0 0 chr4 41983294 41983351 -113646769 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 905 774 294 104 58 chr4 41983379 41983456 -113646664 + L1M4 LINE L1 3266 3339 -2807 9 905 982 110 20 27 chr4 41983456 41983605 -113646515 + B1_Mur3 SINE Alu 1 148 -1 9 905 774 294 104 58 chr4 41983605 41984322 -113645798 + L1M4 LINE L1 3340 4097 -2049 9 905 624 91 0 0 chr4 41984348 41984436 -113645684 + (GA)n Simple_repeat Simple_repeat 1 88 0 9 905 689 144 63 0 chr4 41984451 41984562 -113645558 + B1_Mur2 SINE Alu 26 143 -6 9 905 186 43 0 0 chr4 41984564 41984587 -113645533 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 905 635 281 58 0 chr4 41984587 41984829 -113645291 + L1M4 LINE L1 4352 4607 -1539 9 905 269 193 0 0 chr4 41984830 41984887 -113645233 + Lx9 LINE L1 7587 7643 -1 9 905 388 225 12 0 chr4 41984915 41984995 -113645125 + B3A SINE B2 1 81 -117 9 905 256 244 181 31 chr4 41985134 41985261 -113644859 + L1M4 LINE L1 5138 5283 -863 9 905 341 113 47 31 chr4 41986646 41986710 -113643410 - HAL1-3A_ME LINE L1 -818 2040 1976 9 905 678 211 0 0 chr4 41986716 41986989 -113643131 + (TG)n Simple_repeat Simple_repeat 1 273 0 9 905 307 98 0 0 chr4 41986995 41987036 -113643084 - HAL1-3A_ME LINE L1 -846 2012 1972 9 905 448 298 192 26 chr4 41987109 41987339 -113642781 - B4A SINE B4 -23 269 2 9 905 183 232 189 66 chr4 41987417 41987523 -113642597 + L3 LINE CR1 126 244 -4245 9 905 332 299 73 15 chr4 41988392 41988528 -113641592 + B1F SINE Alu 1 144 -5 9 905 280 280 27 0 chr4 41988550 41988625 -113641495 + ID4_ SINE ID 3 79 -4 9 905 1164 121 5 21 chr4 41989334 41989520 -113640600 + B2_Mm2 SINE B2 1 183 -12 9 905 449 235 147 0 chr4 41989509 41989611 -113640509 - B3A SINE B2 0 198 82 9 905 342 61 0 0 chr4 41989657 41989706 -113640414 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 905 1082 110 0 0 chr4 41989735 41989881 -113640239 + B1_Mus1 SINE Alu 3 148 0 9 905 2123 62 0 25 chr4 41989915 41990196 -113639924 + RMER6A LTR ERVK 57 330 -426 9 905 486 0 0 0 chr4 41990223 41990277 -113639843 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 905 1286 162 38 99 chr4 41990284 41990627 -113639493 - RLTRETN_Mm LTR ERVK 0 322 1 9 905 2510 136 49 20 chr4 41990627 41991062 -113639058 + RMER6A LTR ERVK 309 756 0 9 905 255 61 0 0 chr4 41991369 41991402 -113638718 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 905 246 370 43 0 chr4 41991454 41991546 -113638574 - RSINE1 SINE B4 -67 98 3 9 905 431 356 0 0 chr4 41991555 41991701 -113638419 - B1F SINE Alu -3 146 1 9 905 459 0 0 0 chr4 41991756 41991807 -113638313 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 905 482 312 78 21 chr4 41991845 41992038 -113638082 - B4A SINE B4 -21 271 68 9 905 374 342 75 25 chr4 41993538 41993739 -113636381 - MT2A LTR ERVL -113 420 210 9 905 442 338 0 7 chr4 41993762 41993902 -113636218 - MTE2b LTR MaLR -214 165 27 9 905 369 0 0 0 chr4 41994067 41994108 -113636012 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 905 713 291 0 0 chr4 41994136 41994284 -113635836 - B3A SINE B2 -39 159 12 9 905 965 256 45 5 chr4 41994282 41994502 -113635618 - B4A SINE B4 -63 229 1 9 905 1137 297 231 7 chr4 41994508 41995221 -113634899 + L2a LINE L2 2208 3080 -339 9 905 489 138 0 0 chr4 41995235 41995315 -113634805 + (TC)n Simple_repeat Simple_repeat 2 81 0 9 905 403 211 49 69 chr4 41995426 41995528 -113634592 - PB1D9 SINE Alu -19 101 2 9 905 970 230 0 11 chr4 41995559 41995748 -113634372 - B3A SINE B2 -5 193 7 9 905 528 291 90 10 chr4 41995751 41995952 -113634168 + L2a LINE L2 3203 3419 -7 9 905 319 339 89 12 chr4 41996198 41996446 -113633674 - ERVL-E-int LTR ERVL -1879 3788 3522 9 905 234 137 58 19 chr4 41996663 41996743 -113633377 + (GTTTG)n Simple_repeat Simple_repeat 1 83 0 9 905 423 0 0 0 chr4 41996767 41996814 -113633306 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 905 709 229 0 0 chr4 41996817 41996961 -113633159 - B3A SINE B2 -54 144 1 9 905 444 321 14 14 chr4 41997810 41997949 -113632171 + MER21B LTR ERV1 551 689 -174 9 905 1266 54 0 0 chr4 41998656 41998804 -113631316 + B1_Mus1 SINE Alu 1 148 0 9 905 419 78 0 15 chr4 41999091 41999156 -113630964 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 905 407 216 112 10 chr4 41999588 41999676 -113630444 - MER21B LTR ERV1 -308 555 458 9 905 1918 164 43 3 chr4 41999676 42000000 -113630120 - ORR1C2 LTR MaLR -1 383 47 9 905 321 87 0 0 chr4 42000000 42000046 -113630074 - ORR1C2 LTR MaLR -338 46 1 1 905 239 266 245 0 chr4 42000082 42000176 -113629944 - MER21B LTR ERV1 -445 418 302 2 905 381 95 0 0 chr4 42000397 42000460 -113629660 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 905 479 206 167 0 chr4 42000460 42000586 -113629534 - B3A SINE B2 -51 147 1 4 905 469 146 0 0 chr4 42000639 42000721 -113629399 + B1_Mur2 SINE Alu 68 149 0 5 905 211 220 0 17 chr4 42001109 42001148 -113628972 + (TTA)n Simple_repeat Simple_repeat 1 38 0 6 905 1157 42 7 40 chr4 42001148 42001298 -113628822 - B1_Mm SINE Alu 0 147 3 7 905 211 220 0 17 chr4 42001298 42001318 -113628802 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 905 1794 120 92 0 chr4 42001395 42001687 -113628433 - ORR1A2 LTR MaLR -8 319 1 9 905 410 294 0 106 chr4 42001687 42001820 -113628300 + RSINE1 SINE B4 47 164 -1 1 905 905 274 18 36 chr4 42001903 42002179 -113627941 + B4A SINE B4 3 273 -19 1 905 305 47 23 0 chr4 42003811 42003854 -113626266 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 1 905 445 192 18 54 chr4 42003854 42003979 -113626141 - PB1 SINE Alu -1 126 11 1 905 316 332 157 43 chr4 42005523 42005698 -113624422 + L2c LINE L2 3047 3240 -147 1 905 264 100 0 0 chr4 42005698 42005738 -113624382 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 905 316 332 157 43 chr4 42005738 42005867 -113624253 + L2c LINE L2 3241 3386 -1 1 905 361 259 119 11 chr4 42008538 42008695 -113621425 - MIR SINE MIR -96 166 1 1 905 406 341 80 0 chr4 42008757 42008961 -113621159 - MIRb SINE MIR -4 258 46 1 905 189 74 0 0 chr4 42009679 42009706 -113620414 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 1 905 382 395 82 26 chr4 42010598 42010793 -113619327 + MER115 DNA Tip100 190 395 -298 1 905 952 41 0 0 chr4 42010918 42011041 -113619079 + B1_Mus2 SINE Alu 25 147 0 2 905 377 240 50 79 chr4 42010919 42011059 -113619061 + B4A SINE B4 111 246 -46 2 905 392 243 9 0 chr4 42011059 42011170 -113618950 + GA-rich Low_complexity Low_complexity 3 114 0 2 905 259 297 40 0 chr4 42011268 42011342 -113618778 + MER115 DNA Tip100 492 568 -125 1 905 513 84 0 0 chr4 42011464 42011535 -113618585 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 2 905 398 396 22 74 chr4 42011619 42011848 -113618272 - MLT1N2 LTR MaLR -298 264 48 2 905 180 0 0 0 chr4 42012050 42012070 -113618050 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 905 458 248 9 17 chr4 42012070 42012185 -113617935 - MLT1A LTR MaLR -35 339 226 2 905 462 18 0 0 chr4 42012194 42012249 -113617871 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 905 496 215 19 0 chr4 42012330 42012437 -113617683 - ID_B1 SINE B4 0 224 116 2 905 281 305 67 8 chr4 42012437 42012449 -113617671 - B1_Mur1 SINE Alu 0 149 24 2 905 1257 50 0 0 chr4 42012472 42012633 -113617487 + B2_Mm2 SINE B2 2 162 -33 3 905 276 30 0 0 chr4 42012633 42012666 -113617454 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 905 701 219 0 20 chr4 42013337 42013486 -113616634 + B1_Mur1 SINE Alu 2 147 -2 3 905 558 129 0 67 chr4 42013680 42014016 -113616104 + GA-rich Low_complexity Low_complexity 1 313 0 3 905 593 145 0 58 chr4 42014045 42014235 -113615885 + GA-rich Low_complexity Low_complexity 1 179 0 3 905 393 390 98 35 chr4 42014248 42014849 -113615271 - L2 LINE L2 -421 2998 2360 3 905 554 202 47 0 chr4 42016059 42016188 -113613932 + B1F SINE Alu 14 148 -1 3 905 1060 141 37 37 chr4 42016206 42016397 -113613723 + B2_Mm2 SINE B2 2 192 -3 3 905 310 185 0 24 chr4 42016863 42016946 -113613174 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 905 958 58 14 48 chr4 42017156 42017239 -113612881 + B1_Mus1 SINE Alu 1 83 -65 3 905 2937 78 78 48 chr4 42017239 42017700 -113612420 - IAPLTR2_Mm LTR ERVK 0 475 1 3 905 958 58 14 48 chr4 42017700 42017761 -113612359 + B1_Mus1 SINE Alu 84 140 -8 3 905 968 211 25 5 chr4 42017920 42018120 -113612000 + B3 SINE B2 11 214 -2 4 905 340 286 0 67 chr4 42018188 42018293 -113611827 - ID_B1 SINE B4 -2 222 125 4 905 424 259 61 26 chr4 42018342 42018457 -113611663 - ID_B1 SINE B4 -77 147 29 4 905 706 179 8 0 chr4 42018560 42018683 -113611437 + B3A SINE B2 2 125 -73 4 905 240 86 0 0 chr4 42018697 42018732 -113611388 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 905 1162 223 36 0 chr4 42019402 42019649 -113610471 + Lx6 LINE L1 7179 7434 -26 4 905 547 196 164 82 chr4 42020010 42020193 -113609927 - B3A SINE B2 0 198 1 4 905 1697 225 97 79 chr4 42020208 42020764 -113609356 - Lx8 LINE L1 0 7473 6908 4 905 389 227 20 30 chr4 42020927 42021027 -113609093 + PB1D10 SINE Alu 12 110 -7 4 905 713 220 30 0 chr4 42021038 42021170 -113608950 + B1_Mur3 SINE Alu 1 136 -13 4 905 351 0 0 0 chr4 42021171 42021210 -113608910 + (ATG)n Simple_repeat Simple_repeat 3 41 0 4 905 621 329 120 14 chr4 42022072 42022455 -113607665 + MER70A LTR ERVL 11 472 0 5 905 403 217 120 17 chr4 42022934 42023051 -113607069 - MTE2a LTR MaLR 0 379 251 5 905 706 216 145 6 chr4 42023109 42023281 -113606839 - B3A SINE B2 0 198 3 5 905 1367 73 40 0 chr4 42023367 42023544 -113606576 + B2_Mm2 SINE B2 1 184 -11 5 905 201 320 0 0 chr4 42024613 42024688 -113605432 + G-rich Low_complexity Low_complexity 5 79 0 5 905 185 65 0 31 chr4 42025697 42025729 -113604391 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 905 253 261 106 64 chr4 42025744 42025838 -113604282 - RSINE1 SINE B4 -31 134 37 5 905 1222 289 47 61 chr4 42026005 42026615 -113603505 + RLTR1D LTR ERV1 52 611 -13 5 905 622 203 67 8 chr4 42027914 42028048 -113602072 - B1_Mur1 SINE Alu -1 148 7 5 905 408 71 0 0 chr4 42028211 42028267 -113601853 + (CGGGG)n Simple_repeat Simple_repeat 1 56 0 5 905 209 194 0 0 chr4 42028794 42028830 -113601290 + GA-rich Low_complexity Low_complexity 1 36 0 6 905 223 214 0 0 chr4 42030088 42030130 -113599990 + B4 SINE B4 42 83 -209 6 905 252 248 209 9 chr4 42031792 42031902 -113598218 + MIRb SINE MIR 34 165 -103 6 905 248 91 29 29 chr4 42032139 42032207 -113597913 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 905 231 271 23 34 chr4 42032224 42032312 -113597808 - RSINE1 SINE B4 -1 164 78 6 905 411 288 34 91 chr4 42032339 42032515 -113597605 - B4 SINE B4 -126 166 1 6 905 333 270 94 11 chr4 42034421 42034538 -113595582 + B1F SINE Alu 2 116 -1 6 905 220 316 119 31 chr4 42034596 42034789 -113595331 + L2a LINE L2 2910 3119 -256 6 905 260 278 139 0 chr4 42034794 42034902 -113595218 + L2a LINE L2 3280 3402 -24 6 905 432 0 0 0 chr4 42035654 42035702 -113594418 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 905 198 218 53 35 chr4 42036171 42036228 -113593892 + L2c LINE L2 2510 2567 -852 6 905 273 164 18 18 chr4 42036245 42036301 -113593819 + L2c LINE L2 3328 3383 -4 6 905 947 208 22 17 chr4 42037091 42037272 -113592848 + B3A SINE B2 1 182 -16 7 905 491 297 22 7 chr4 42037641 42037780 -113592340 + B1F2 SINE Alu 1 141 -8 7 905 822 197 14 0 chr4 42037796 42037938 -113592182 + B1_Mur3 SINE Alu 1 144 -5 7 905 423 0 0 0 chr4 42037986 42038033 -113592087 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 905 190 344 0 0 chr4 42038346 42038407 -113591713 + L2a LINE L2 3274 3334 -92 7 905 331 307 65 0 chr4 42038704 42038850 -113591270 - L1M5 LINE L1 -582 5658 5504 7 905 224 182 0 154 chr4 42038860 42038925 -113591195 + L2a LINE L2 3341 3395 -31 7 905 657 0 0 0 chr4 42041773 42041846 -113588274 + (CCA)n Simple_repeat Simple_repeat 2 74 0 7 905 369 109 0 0 chr4 42042198 42042253 -113587867 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 905 405 0 0 0 chr4 42042862 42042907 -113587213 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 905 201 234 26 86 chr4 42043644 42043761 -113586359 + G-rich Low_complexity Low_complexity 6 115 0 8 905 204 111 0 0 chr4 42043777 42043813 -113586307 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 8 905 195 100 0 0 chr4 42043862 42043892 -113586228 + (CGG)n Simple_repeat Simple_repeat 2 31 0 8 905 540 0 0 0 chr4 42044238 42044298 -113585822 + (TGG)n Simple_repeat Simple_repeat 3 62 0 8 905 414 0 0 0 chr4 42044554 42044600 -113585520 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 905 180 0 0 0 chr4 42045602 42045622 -113584498 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 8 905 324 129 0 16 chr4 42047629 42047692 -113582428 - MER121 Unknown Unknown -218 194 133 8 905 435 78 0 0 chr4 42048557 42048621 -113581499 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 905 225 0 0 0 chr4 42050173 42050198 -113579922 + (A)n Simple_repeat Simple_repeat 1 25 0 8 905 760 210 116 16 chr4 42050973 42051162 -113578958 + B3 SINE B2 1 208 -8 8 905 682 204 46 118 chr4 42051189 42051384 -113578736 + B3 SINE B2 36 216 0 9 905 252 368 52 13 chr4 42051732 42051771 -113578349 + MIR SINE MIR 90 132 -130 9 905 318 50 0 0 chr4 42051771 42051811 -113578309 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 905 252 368 52 13 chr4 42051811 42051925 -113578195 + MIR SINE MIR 133 249 -13 9 905 351 0 0 0 chr4 42051984 42052023 -113578097 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 905 207 241 103 0 chr4 42052355 42052413 -113577707 - MIRb SINE MIR -79 189 126 9 905 522 0 0 0 chr4 42053680 42053738 -113576382 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 905 212 269 0 0 chr4 42053744 42053796 -113576324 + L3b LINE CR1 240 291 -191 9 905 255 265 0 28 chr4 42054209 42054361 -113575759 + CT-rich Low_complexity Low_complexity 1 147 0 9 905 189 196 0 0 chr4 42055480 42055526 -113574594 + (CCCG)n Simple_repeat Simple_repeat 4 49 0 9 905 24 0 0 0 chr4 42055695 42055719 -113574401 + GC_rich Low_complexity Low_complexity 1 24 0 9 905 245 138 0 97 chr4 42055722 42055794 -113574326 + C-rich Low_complexity Low_complexity 2 66 0 1 905 13974 71 26 14 chr4 42056280 42058524 -113571596 + L1VL2 LINE L1 716 2987 -628 1 905 375 325 89 59 chr4 42058702 42059296 -113570824 + MuRRS4-int LTR ERV1 1804 2415 -5191 1 905 573 369 3 3 chr4 42059352 42059635 -113570485 + MuRRS4-int LTR ERV1 3991 4273 -3333 1 905 2074 284 30 9 chr4 42060028 42060789 -113569331 + MuRRS4-int LTR ERV1 3533 4025 -1038 1 905 548 308 22 22 chr4 42061298 42061536 -113568584 + RLTR6-int LTR ERV1 7476 7688 -90 1 905 2489 118 170 3 chr4 42061633 42062015 -113568105 + RLTR41 LTR ERV1 1 446 0 1 905 454 306 62 62 chr4 42062118 42062310 -113567810 - B3A SINE B2 -1 197 6 1 905 363 240 151 29 chr4 42062367 42062539 -113567581 - L1MD2 LINE L1 -984 5560 5368 1 905 287 313 142 17 chr4 42062604 42062893 -113567227 - L1MD2 LINE L1 -1141 5403 5079 1 905 323 269 13 0 chr4 42062993 42063071 -113567049 + ID4 SINE ID 2 80 -3 1 905 650 271 198 19 chr4 42063087 42063389 -113566731 + MTEa LTR MaLR 1 338 -21 1 905 841 286 44 13 chr4 42063468 42063871 -113566249 - L1MD2 LINE L1 -4555 2085 1639 1 905 825 171 29 0 chr4 42063884 42064024 -113566096 - B1_Mur2 SINE Alu -5 144 1 1 905 1083 312 77 8 chr4 42064141 42064707 -113565413 - L1MD2 LINE L1 -5514 1126 505 1 905 240 366 88 22 chr4 42064743 42064880 -113565240 - L1MD2 LINE L1 -6221 326 181 1 905 840 144 53 0 chr4 42065358 42065490 -113564630 + B1_Mm SINE Alu 1 139 -8 1 905 1131 70 0 0 chr4 42065490 42065648 -113564472 + (GGA)n Simple_repeat Simple_repeat 2 159 0 1 905 303 71 0 0 chr4 42065650 42065692 -113564428 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 1 905 1227 180 9 9 chr4 42065909 42066122 -113563998 + B3 SINE B2 1 213 -3 1 905 780 172 31 0 chr4 42066164 42066327 -113563793 + Lx5 LINE L1 6880 7047 -3 1 905 839 240 51 101 chr4 42066490 42066808 -113563312 + ORR1E LTR MaLR 4 303 -56 1 905 875 132 13 53 chr4 42066808 42066960 -113563160 - B1_Mus2 SINE Alu -1 146 1 1 905 839 240 51 101 chr4 42066960 42067016 -113563104 + ORR1E LTR MaLR 304 359 0 1 905 201 39 0 0 chr4 42067453 42067479 -113562641 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 905 340 142 0 39 chr4 42067494 42067561 -113562559 - B2_Mm2 SINE B2 -107 109 47 1 905 1208 124 11 0 chr4 42067627 42067804 -113562316 - B2_Mm1t SINE B2 -14 179 1 1 905 447 196 118 5 chr4 42068168 42068274 -113561846 + B1_Mur3 SINE Alu 7 119 -30 1 905 719 261 57 0 chr4 42068279 42068436 -113561684 - B3 SINE B2 -50 166 1 1 905 2649 61 3 6 chr4 42069138 42069466 -113560654 + ORR1A2 LTR MaLR 1 327 0 1 905 417 20 0 0 chr4 42069564 42069614 -113560506 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 905 540 0 0 0 chr4 42069614 42069673 -113560447 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 905 480 206 167 0 chr4 42069682 42069784 -113560336 - B4A SINE B4 -14 278 160 1 905 285 207 146 0 chr4 42069795 42069877 -113560243 - B4 SINE B4 -193 99 6 1 905 595 281 63 22 chr4 42070194 42070416 -113559704 - L1MA4 LINE L1 -365 5935 5705 1 905 444 313 7 64 chr4 42070609 42070652 -113559468 - RSINE1 SINE B4 -15 150 109 1 905 5324 146 43 5 chr4 42070652 42071575 -113558545 + RMER17B LTR ERVK 1 958 0 1 905 444 313 7 64 chr4 42071575 42071671 -113558449 - RSINE1 SINE B4 -57 108 19 1 905 850 169 0 0 chr4 42071749 42071885 -113558235 - B1_Mur2 SINE Alu 0 149 14 1 905 585 238 26 39 chr4 42071885 42071902 -113558218 - ID_B1 SINE B4 0 224 74 1 905 2232 126 12 3 chr4 42072271 42072614 -113557506 + ORR1A1 LTR MaLR 1 346 0 1 905 1180 75 0 0 chr4 42072985 42073132 -113556988 + B1_Mus2 SINE Alu 1 147 0 1 905 443 259 86 0 chr4 42073190 42073306 -113556814 + B1_Mur1 SINE Alu 24 149 0 1 905 2420 56 0 3 chr4 42073311 42073617 -113556503 + L1Md_F2 LINE L1 6278 6582 0 1 905 217 167 18 18 chr4 42073644 42073699 -113556421 + G-rich Low_complexity Low_complexity 5 59 0 1 906 214 216 19 19 chr4 42074408 42074460 -113555660 + CT-rich Low_complexity Low_complexity 2 53 0 1 906 387 0 0 0 chr4 42075364 42075407 -113554713 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 906 652 124 29 0 chr4 42075411 42075516 -113554604 - B1_Mus2 SINE Alu 0 147 40 1 906 904 186 11 17 chr4 42075519 42075761 -113554359 + (TCTCTG)n Simple_repeat Simple_repeat 1 240 0 1 906 393 381 0 0 chr4 42075641 42075817 -113554303 + C-rich Low_complexity Low_complexity 1 176 0 1 906 278 263 43 65 chr4 42075827 42075839 -113554281 - ID_B1 SINE B4 -67 157 141 1 906 367 152 0 33 chr4 42075839 42075900 -113554220 - B1_Mur4 SINE Alu -90 60 2 1 906 278 263 43 65 chr4 42075900 42075985 -113554135 - ID_B1 SINE B4 -67 140 9 1 906 1013 240 108 4 chr4 42076106 42076357 -113553763 + B4A SINE B4 2 278 -14 1 906 1293 83 0 0 chr4 42076361 42076541 -113553579 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 906 1243 225 144 22 chr4 42076643 42076827 -113553293 - MTD LTR MaLR -14 405 197 1 906 1317 82 0 0 chr4 42076827 42077182 -113552938 + (TG)n Simple_repeat Simple_repeat 1 355 0 1 906 1243 225 144 22 chr4 42077182 42077350 -113552770 - MTD LTR MaLR -223 196 10 1 906 319 73 0 0 chr4 42077443 42077484 -113552636 + B1_Mus2 SINE Alu 1 41 -106 1 906 201 39 0 0 chr4 42077491 42077517 -113552603 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 906 1014 162 87 43 chr4 42077583 42077790 -113552330 - B3 SINE B2 0 216 1 1 906 239 229 43 0 chr4 42078000 42078070 -113552050 - L1M4b LINE L1 -4276 3058 2986 1 906 262 323 43 0 chr4 42078138 42078168 -113551952 - BC1_Mm scRNA scRNA -48 104 8 1 906 362 206 0 0 chr4 42078168 42078231 -113551889 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 1 906 21 0 0 0 chr4 42078687 42078708 -113551412 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 405 0 0 0 chr4 42079017 42079062 -113551058 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 906 1210 170 63 0 chr4 42079391 42079597 -113550523 - MTC LTR MaLR 0 421 203 1 906 567 0 0 0 chr4 42079597 42079660 -113550460 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 1 906 21 0 0 0 chr4 42079684 42079705 -113550415 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 306 35 0 50 chr4 42079706 42079766 -113550354 - B2_Mm2 SINE B2 -2 193 137 1 906 1291 96 6 6 chr4 42079833 42080011 -113550109 - B2_Mm1t SINE B2 -14 179 2 1 906 22 0 0 0 chr4 42080013 42080035 -113550085 + AT_rich Low_complexity Low_complexity 1 22 0 1 906 2153 138 89 17 chr4 42080035 42080136 -113549984 - Lx4B LINE L1 -7 7051 6939 1 906 198 0 0 0 chr4 42080136 42080158 -113549962 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 906 2153 138 89 17 chr4 42080158 42080461 -113549659 - Lx4B LINE L1 -120 6938 6620 1 906 1354 127 5 5 chr4 42080462 42080668 -113549452 - MTC LTR MaLR -215 206 1 1 906 1234 246 22 29 chr4 42081133 42081405 -113548715 + B4 SINE B4 2 271 -21 1 906 396 0 0 0 chr4 42081413 42081457 -113548663 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 906 1980 112 79 38 chr4 42081642 42081985 -113548135 + ORR1B2 LTR MaLR 3 359 -8 1 906 554 204 34 26 chr4 42082140 42082267 -113547853 + MTC LTR MaLR 1 120 -299 1 906 723 201 14 27 chr4 42082627 42082775 -113547345 + B1_Mus1 SINE Alu 2 147 -1 1 906 1645 194 10 10 chr4 42082974 42083286 -113546834 + MTC LTR MaLR 110 421 0 1 906 311 296 39 133 chr4 42083533 42083645 -113546475 - L1MEg LINE L1 -974 5172 5078 1 906 273 270 14 0 chr4 42083645 42083719 -113546401 + ID4 SINE ID 2 76 -7 1 906 311 296 39 133 chr4 42083719 42083809 -113546311 - L1MEg LINE L1 -1069 5077 4989 1 906 239 221 20 131 chr4 42083809 42083908 -113546212 - MLT1A1 LTR MaLR -5 403 316 1 906 431 177 241 0 chr4 42084136 42084277 -113545843 - Lx9 LINE L1 -21 7623 7449 1 906 500 229 111 0 chr4 42084275 42084419 -113545701 + Lx9 LINE L1 7258 7417 -227 1 906 803 232 60 11 chr4 42084698 42084881 -113545239 - MTD LTR MaLR -2 417 226 1 906 501 127 38 0 chr4 42084878 42084957 -113545163 - MTD LTR MaLR -337 82 1 1 906 384 143 0 0 chr4 42085163 42085247 -113544873 + (A)n Simple_repeat Simple_repeat 1 84 0 1 906 545 76 13 0 chr4 42085711 42085790 -113544330 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 906 861 206 38 72 chr4 42085920 42086129 -113543991 - B3 SINE B2 -14 202 1 1 906 437 297 273 38 chr4 42086363 42086444 -113543676 - L1MEg LINE L1 -4948 1294 1188 1 906 231 61 0 0 chr4 42086444 42086477 -113543643 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1 906 437 297 273 38 chr4 42086477 42086710 -113543410 - L1MEg LINE L1 -5055 1187 907 1 906 408 205 13 0 chr4 42086756 42086834 -113543286 + ORR1D2 LTR MaLR 3 81 -289 1 906 313 55 55 0 chr4 42087374 42087429 -113542691 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 906 313 286 86 43 chr4 42088671 42088788 -113541332 - MTEa LTR MaLR -6 373 252 1 906 244 339 26 35 chr4 42088959 42089072 -113541048 - MTE-int LTR MaLR -475 1105 994 1 906 302 286 58 93 chr4 42089063 42089202 -113540918 + MTEa LTR MaLR 242 375 -4 1 906 343 212 8 117 chr4 42089228 42089356 -113540764 + Lx5 LINE L1 6906 7044 -14 1 906 1896 106 31 22 chr4 42090870 42091189 -113538931 - RLTRETN_Mm LTR ERVK 0 322 1 1 906 17864 169 42 30 chr4 42091189 42094484 -113535636 - ETnERV2-int LTR ERVK -107 7299 3719 1 906 184 209 47 0 chr4 42094484 42094527 -113535593 + L4 LINE RTE 754 798 -1231 1 906 17864 169 42 30 chr4 42094527 42097087 -113533033 - ETnERV2-int LTR ERVK -107 3718 934 1 906 3725 62 22 6 chr4 42097087 42097575 -113532545 - LTRIS2 LTR ERV1 0 564 69 1 906 945 221 64 0 chr4 42097575 42097810 -113532310 - RLTR1B-int LTR ERV1 -26 5037 4788 1 906 1240 285 88 15 chr4 42097895 42098304 -113531816 - RLTR1B-int LTR ERV1 -917 4146 3708 1 906 9311 155 81 62 chr4 42098299 42100600 -113529520 - RLTR1B-int LTR ERV1 -746 2553 760 1 906 4549 148 14 25 chr4 42100591 42101352 -113528768 - RMER16-int LTR ERVK -3962 1444 692 1 906 697 124 92 15 chr4 42101337 42101468 -113528652 - RMER16-int LTR ERVK -5124 282 142 1 906 1155 125 24 49 chr4 42101813 42102080 -113528040 - RLTR1B-int LTR ERV1 -3006 293 61 1 906 3714 64 22 6 chr4 42102214 42102702 -113527418 - LTRIS2 LTR ERV1 0 564 69 1 906 1306 39 6 0 chr4 42102702 42102858 -113527262 - ETnERV-int LTR ERVK -2362 952 796 1 906 2236 140 6 0 chr4 42160947 42161289 -113468831 - RLTR14 LTR ERV1 -35 347 4 1 906 447 19 0 0 chr4 42161617 42161669 -113468451 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 906 1975 118 136 20 chr4 42161863 42162216 -113467904 - ORR1B1 LTR MaLR 0 394 1 1 906 447 68 0 0 chr4 42162216 42162275 -113467845 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 906 25 31 0 0 chr4 42162307 42162339 -113467781 + AT_rich Low_complexity Low_complexity 1 32 0 1 906 1569 135 96 4 chr4 42162480 42162741 -113467379 + ORR1B1 LTR MaLR 41 325 -69 1 906 610 222 157 61 chr4 42162980 42163177 -113466943 + B3 SINE B2 1 216 0 1 906 189 400 0 0 chr4 42163274 42163339 -113466781 - L2 LINE L2 -1754 1665 1601 1 906 707 317 95 45 chr4 42163749 42163842 -113466278 + ORR1E LTR MaLR 6 92 -267 1 906 1434 109 17 48 chr4 42163842 42164072 -113466048 - URR1B DNA MER1_type 0 225 3 1 906 707 317 95 45 chr4 42164072 42164315 -113465805 + ORR1E LTR MaLR 93 359 0 1 906 247 0 79 0 chr4 42164415 42164453 -113465667 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 2 906 3675 62 4 13 chr4 42164458 42164930 -113465190 - L1_Mus2 LINE L1 -1 6565 6098 2 906 767 249 69 86 chr4 42165777 42166067 -113464053 + B4 SINE B4 8 292 0 2 906 600 77 0 0 chr4 42166097 42166188 -113463932 + (CAGAGA)n Simple_repeat Simple_repeat 6 96 0 2 906 354 240 13 0 chr4 42166702 42166777 -113463343 + PB1D10 SINE Alu 5 80 -37 2 906 1426 233 83 41 chr4 42166785 42167148 -113462972 + MTD LTR MaLR 38 415 -4 2 906 242 255 0 0 chr4 42167152 42167199 -113462921 + polypurine Low_complexity Low_complexity 3 49 0 2 906 857 233 47 16 chr4 42168474 42168666 -113461454 + B3A SINE B2 1 198 0 2 906 25 0 0 0 chr4 42168845 42168870 -113461250 + AT_rich Low_complexity Low_complexity 1 25 0 2 906 473 274 24 54 chr4 42168895 42169061 -113461059 - RSINE1 SINE B4 0 165 5 2 906 261 324 47 9 chr4 42169635 42169741 -113460379 + ORR1E LTR MaLR 1 110 -249 2 906 737 243 133 31 chr4 42170027 42170222 -113459898 - B3 SINE B2 -1 215 1 2 906 259 175 46 31 chr4 42170222 42170287 -113459833 + ORR1E LTR MaLR 294 365 -14 2 906 891 302 96 75 chr4 42170289 42170822 -113459298 - ORR1D2-int LTR MaLR -868 712 169 2 906 267 202 161 35 chr4 42170844 42170931 -113459189 - RMER10A LTR ERVL -27 415 318 2 906 387 0 0 0 chr4 42171140 42171183 -113458937 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 906 476 284 27 54 chr4 42171390 42171576 -113458544 - ORR1D2-int LTR MaLR -1399 181 1 2 906 312 239 33 22 chr4 42171576 42171666 -113458454 - ORR1D2 LTR MaLR 0 370 280 2 906 314 197 0 57 chr4 42171921 42171991 -113458129 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 2 906 738 198 0 0 chr4 42171994 42172161 -113457959 + (TG)n Simple_repeat Simple_repeat 2 168 0 2 906 794 330 73 13 chr4 42172183 42172484 -113457636 - MLT2F LTR ERVL -84 579 261 2 906 381 275 111 14 chr4 42172587 42172731 -113457389 - Tigger7 DNA MER2_type -26 2465 2308 2 906 587 290 76 31 chr4 42172736 42173344 -113456776 + L1MD LINE L1 2160 2808 -3338 2 906 303 289 60 6 chr4 42173425 42173592 -113456528 + L1MD LINE L1 5099 5274 -872 2 906 667 272 65 14 chr4 42173598 42173814 -113456306 + B4A SINE B4 2 228 -64 2 906 613 247 73 7 chr4 42173816 42173967 -113456153 + RSINE1 SINE B4 3 163 -2 2 906 270 0 0 0 chr4 42173993 42174023 -113456097 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 906 387 0 0 0 chr4 42174023 42174065 -113456055 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 906 395 229 81 8 chr4 42174084 42174207 -113455913 + L1M5 LINE L1 5358 5489 -690 2 906 1113 188 14 24 chr4 42174207 42174419 -113455701 + B3 SINE B2 6 215 -1 2 906 805 74 16 8 chr4 42174442 42174564 -113455556 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2 906 501 313 70 9 chr4 42174565 42174794 -113455326 + L1M5 LINE L1 5485 5727 -452 2 906 211 182 0 0 chr4 42175291 42175324 -113454796 + polypurine Low_complexity Low_complexity 2 34 0 2 906 218 89 44 0 chr4 42175454 42175499 -113454621 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 906 186 43 0 0 chr4 42175593 42175616 -113454504 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 906 323 375 8 0 chr4 42176291 42176419 -113453701 + MLT1A0 LTR MaLR 117 245 -120 2 906 573 161 61 45 chr4 42176439 42176603 -113453517 - RMER1B Other Other 0 1066 850 2 906 1291 172 239 3 chr4 42176681 42176966 -113453154 - RMER1B Other Other -362 704 353 2 906 965 250 168 8 chr4 42176995 42177257 -113452863 - RMER1B Other Other -534 532 229 2 906 4560 106 32 18 chr4 42177461 42178179 -113451941 + RMER6A LTR ERVK 1 728 -28 2 906 339 225 24 24 chr4 42178345 42178427 -113451693 - PB1 SINE Alu -7 120 39 2 906 676 219 183 50 chr4 42178569 42178809 -113451311 + RLTR10A LTR ERVK 140 411 0 2 906 626 130 0 9 chr4 42179166 42179275 -113450845 + (TG)n Simple_repeat Simple_repeat 2 109 0 2 906 1280 124 5 0 chr4 42179533 42179719 -113450401 - B2_Mm2 SINE B2 -8 187 1 2 906 936 182 5 43 chr4 42179841 42180025 -113450095 - B3 SINE B2 -20 196 20 2 906 297 186 0 28 chr4 42180178 42180250 -113449870 - L1M LINE L1 -772 5407 5338 2 906 14166 68 25 13 chr4 42180340 42182584 -113447536 + L1VL2 LINE L1 716 2987 -628 2 906 308 344 114 58 chr4 42182760 42183402 -113446718 + MuLV-int LTR ERV1 1789 2466 -5140 2 906 496 379 3 3 chr4 42183409 42183692 -113446428 + MuLV-int LTR ERV1 3991 4273 -3333 2 906 2088 258 16 4 chr4 42184087 42184574 -113445546 + MuRRS4-int LTR ERV1 3533 4025 -1038 2 906 548 308 22 22 chr4 42185345 42185583 -113444537 + RLTR6-int LTR ERV1 7476 7688 -90 2 906 2553 116 171 0 chr4 42185682 42186063 -113444057 + RLTR41 LTR ERV1 1 446 0 2 906 454 324 52 52 chr4 42186166 42186358 -113443762 - B3A SINE B2 -1 197 6 2 906 339 220 176 57 chr4 42186359 42186586 -113443534 - L1M4 LINE L1 -923 5223 4970 2 906 300 319 26 17 chr4 42186651 42186766 -113443354 - L1M4 LINE L1 -1141 5005 4890 2 906 240 308 44 0 chr4 42186853 42186944 -113443176 - L1MD2 LINE L1 -1371 5173 5079 2 906 323 269 13 0 chr4 42187039 42187117 -113443003 + ID4 SINE ID 2 80 -3 2 906 613 279 196 22 chr4 42187123 42187394 -113442726 + MTEa LTR MaLR 1 318 -61 2 906 784 290 17 20 chr4 42187592 42187891 -113442229 - L1MD2 LINE L1 -4702 1938 1641 2 906 779 193 29 0 chr4 42187914 42188054 -113442066 - B1_Mur2 SINE Alu -5 144 1 2 906 1155 309 109 9 chr4 42188177 42188742 -113441378 - L1MD2 LINE L1 -5514 1126 505 2 906 316 304 11 32 chr4 42188778 42188873 -113441247 - L1MD2 LINE L1 -6221 326 234 2 906 820 152 53 0 chr4 42189385 42189517 -113440603 + B1_Mm SINE Alu 1 139 -8 2 906 681 79 0 0 chr4 42189517 42189618 -113440502 + (GGA)n Simple_repeat Simple_repeat 2 102 0 2 906 447 52 0 0 chr4 42189620 42189678 -113440442 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 2 906 1185 194 9 9 chr4 42189895 42190108 -113440012 + B3 SINE B2 1 213 -3 2 906 755 190 31 0 chr4 42190148 42190311 -113439809 + Lx5 LINE L1 6880 7047 -3 2 906 1636 26 0 20 chr4 42190331 42190527 -113439593 + B2_Mm1a SINE B2 2 193 0 2 906 891 246 40 98 chr4 42190675 42190996 -113439124 + ORR1E LTR MaLR 4 303 -56 2 906 922 132 14 20 chr4 42190996 42191143 -113438977 - B1_Mus2 SINE Alu -1 146 1 2 906 891 246 40 98 chr4 42191143 42191199 -113438921 + ORR1E LTR MaLR 304 359 0 2 906 531 0 0 0 chr4 42191636 42191695 -113438425 + (TTTA)n Simple_repeat Simple_repeat 1 59 0 2 906 325 159 0 39 chr4 42191709 42191776 -113438344 - B2_Mm2 SINE B2 -107 109 47 2 906 1267 107 11 0 chr4 42191842 42192019 -113438101 - B2_Mm1a SINE B2 -14 179 1 2 906 447 196 118 5 chr4 42192383 42192489 -113437631 + B1_Mur3 SINE Alu 7 119 -30 2 906 743 255 57 0 chr4 42192494 42192651 -113437469 - B3 SINE B2 -50 166 1 2 906 2648 61 3 6 chr4 42193353 42193681 -113436439 + ORR1A2 LTR MaLR 1 327 0 2 906 342 0 0 0 chr4 42193779 42193817 -113436303 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 906 450 0 0 0 chr4 42193817 42193866 -113436254 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 906 466 216 167 0 chr4 42193875 42193977 -113436143 - B4A SINE B4 -14 278 160 2 906 285 207 146 0 chr4 42193988 42194070 -113436050 - B4 SINE B4 -193 99 6 2 906 617 276 63 22 chr4 42194387 42194609 -113435511 - L1MA4 LINE L1 -365 5935 5705 2 906 4519 118 10 7 chr4 42194844 42195538 -113434582 + RMER17B LTR ERVK 1 696 -262 2 906 204 219 24 0 chr4 42195551 42195592 -113434528 + CT-rich Low_complexity Low_complexity 2 43 0 2 906 492 18 0 0 chr4 42196519 42196576 -113433544 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 906 885 147 21 0 chr4 42196578 42196721 -113433399 - B1_Mus2 SINE Alu 0 147 2 2 906 439 272 70 118 chr4 42196721 42196806 -113433314 - B4 SINE B4 -66 225 9 2 906 1011 239 97 50 chr4 42196927 42197182 -113432938 + B4A SINE B4 2 282 -10 2 906 1296 88 0 0 chr4 42197182 42198216 -113431904 + (CA)n Simple_repeat Simple_repeat 1 1034 0 2 906 1188 217 160 24 chr4 42198283 42198480 -113431640 - MTD LTR MaLR 0 419 199 2 906 564 15 0 0 chr4 42198480 42198545 -113431575 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 906 1188 217 160 24 chr4 42198545 42198716 -113431404 - MTD LTR MaLR -221 198 2 2 906 331 0 0 0 chr4 42198807 42198848 -113431272 + B1_Mus2 SINE Alu 1 41 -106 2 906 218 184 41 0 chr4 42198873 42198922 -113431198 - B4A SINE B4 -241 51 1 2 906 930 122 191 11 chr4 42198934 42198968 -113431152 - B3 SINE B2 0 216 181 2 906 441 0 0 0 chr4 42198968 42199017 -113431103 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 906 930 122 191 11 chr4 42199017 42199165 -113430955 - B3 SINE B2 -36 180 1 2 906 402 257 62 7 chr4 42199218 42199363 -113430757 - L1M4b LINE L1 -4069 3265 3113 2 906 239 229 43 0 chr4 42199375 42199445 -113430675 - L1M4b LINE L1 -4276 3058 2986 2 906 254 333 43 0 chr4 42199513 42199543 -113430577 - BC1_Mm scRNA scRNA -48 104 8 2 906 355 222 0 0 chr4 42199543 42199606 -113430514 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 2 906 1183 184 59 18 chr4 42200726 42200932 -113429188 - MTC LTR MaLR 0 421 203 2 906 675 0 0 0 chr4 42200932 42201007 -113429113 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2 906 1183 184 59 18 chr4 42201007 42201021 -113429099 - MTC LTR MaLR -219 202 192 2 906 21 0 0 0 chr4 42201032 42201053 -113429067 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 306 35 0 50 chr4 42201054 42201114 -113429006 - B2_Mm2 SINE B2 -2 193 137 2 906 1317 90 6 6 chr4 42201181 42201359 -113428761 - B2_Mm1t SINE B2 -14 179 2 2 906 22 0 0 0 chr4 42201361 42201383 -113428737 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 2178 136 89 17 chr4 42201383 42201484 -113428636 - Lx4B LINE L1 -7 7051 6939 2 906 252 0 0 0 chr4 42201484 42201512 -113428608 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 906 2178 136 89 17 chr4 42201512 42201815 -113428305 - Lx4B LINE L1 -120 6938 6620 2 906 1354 127 5 5 chr4 42201816 42202022 -113428098 - MTC LTR MaLR -215 206 1 2 906 1197 247 24 28 chr4 42202487 42202778 -113427342 + B4 SINE B4 2 291 -1 2 906 1990 106 78 41 chr4 42202958 42203302 -113426818 + ORR1B2 LTR MaLR 3 359 -8 2 906 2286 183 12 7 chr4 42203479 42203887 -113426233 + MTC LTR MaLR 12 421 0 2 906 252 172 12 219 chr4 42204035 42204117 -113426003 - ORR1C1 LTR MaLR -313 65 1 2 906 273 270 14 0 chr4 42204237 42204311 -113425809 + ID4 SINE ID 2 76 -7 2 906 235 232 20 131 chr4 42204393 42204492 -113425628 - MLT1A1 LTR MaLR -5 403 316 2 906 421 179 243 0 chr4 42204720 42204860 -113425260 - Lx9 LINE L1 -21 7623 7450 2 906 324 263 119 0 chr4 42204885 42205003 -113425117 + Lx9 LINE L1 7286 7417 -227 3 907 827 231 55 6 chr4 42205282 42205465 -113424655 - MTD LTR MaLR -2 417 226 3 907 501 127 38 0 chr4 42205462 42205541 -113424579 - MTD LTR MaLR -337 82 1 3 907 210 71 0 0 chr4 42205749 42205777 -113424343 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 907 501 97 0 0 chr4 42206273 42206345 -113423775 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 907 900 206 43 11 chr4 42206483 42206669 -113423451 - B3 SINE B2 -4 212 21 3 907 472 284 208 54 chr4 42206992 42207164 -113422956 - L1MCa LINE L1 -5156 1352 1184 3 907 190 0 0 62 chr4 42207164 42207196 -113422924 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 907 472 284 208 54 chr4 42207196 42207355 -113422765 - L1MCa LINE L1 -5325 1183 971 3 907 408 205 13 0 chr4 42207401 42207479 -113422641 + ORR1D2 LTR MaLR 3 81 -289 3 907 277 59 59 0 chr4 42208021 42208072 -113422048 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 3 907 283 296 88 44 chr4 42209315 42209428 -113420692 - MTEa LTR MaLR -7 372 255 3 907 226 328 80 66 chr4 42209442 42209579 -113420541 - MTEa LTR MaLR -120 239 101 3 907 304 319 24 32 chr4 42209602 42209725 -113420395 - MTE-int LTR MaLR -475 1105 984 3 907 308 286 58 93 chr4 42209706 42209845 -113420275 + MTEa LTR MaLR 242 375 -4 3 907 343 212 8 110 chr4 42209871 42209998 -113420122 + Lx5 LINE L1 6906 7044 -14 3 907 654 231 28 0 chr4 42215138 42215281 -113414839 + B1_Mur1 SINE Alu 2 148 -1 3 907 439 284 95 56 chr4 42215790 42216074 -113414046 + L2 LINE L2 2383 2677 -742 3 907 868 261 5 42 chr4 42216500 42216716 -113413404 + B3 SINE B2 2 209 -7 3 907 1205 55 0 7 chr4 42216964 42217110 -113413010 - B1_Mus2 SINE Alu -1 146 2 3 907 290 224 68 48 chr4 42217365 42217468 -113412652 - MER65-int LTR ERV1 -2854 2017 1913 3 907 928 204 78 0 chr4 42217488 42217679 -113412441 - B3 SINE B2 -10 206 1 3 907 624 229 7 27 chr4 42217854 42217870 -113412250 - B1_Mm SINE Alu 0 147 135 3 907 450 0 0 0 chr4 42217870 42217920 -113412200 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 907 624 229 7 27 chr4 42217920 42218051 -113412069 - B1_Mm SINE Alu -13 134 4 3 907 204 40 0 0 chr4 42218065 42218090 -113412030 + (T)n Simple_repeat Simple_repeat 1 25 0 3 907 1228 54 0 0 chr4 42218090 42218237 -113411883 - B1_Mm SINE Alu 0 147 1 3 907 841 190 23 1 chr4 42218427 42218608 -113411512 - B3 SINE B2 0 195 1 3 907 486 49 0 0 chr4 42219057 42219118 -113411002 + (CATA)n Simple_repeat Simple_repeat 2 62 0 3 907 920 152 0 11 chr4 42219125 42219305 -113410815 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 907 182 354 113 44 chr4 42219645 42220008 -113410112 - L2 LINE L2 -1216 2203 1816 3 907 435 174 8 148 chr4 42221415 42221543 -113408577 + MT2B LTR ERVL 155 264 -337 3 907 885 65 97 0 chr4 42221442 42221566 -113408554 + B1_Mus1 SINE Alu 13 148 0 3 907 227 29 57 0 chr4 42221566 42221601 -113408519 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 3 907 851 265 62 56 chr4 42221739 42222043 -113408077 + Lx8 LINE L1 7136 7441 -32 3 907 663 237 22 0 chr4 42222934 42223069 -113407051 - B1_Mur1 SINE Alu -5 144 7 3 907 364 309 28 35 chr4 42225787 42225931 -113404189 - MER5A DNA MER1_type -26 163 21 3 907 1062 310 62 25 chr4 42226022 42226425 -113403695 - MT2A LTR ERVL -8 525 108 3 907 416 329 7 87 chr4 42226506 42226656 -113403464 + B4 SINE B4 2 139 -153 3 907 344 274 0 23 chr4 42226674 42226760 -113403360 + RSINE1 SINE B4 82 165 0 3 907 384 247 53 11 chr4 42226856 42226950 -113403170 - MTEa LTR MaLR -279 100 3 3 907 247 323 19 57 chr4 42226953 42227058 -113403062 + B3 SINE B2 27 127 -89 3 907 237 309 58 96 chr4 42227067 42227171 -113402949 + B4A SINE B4 73 172 -120 3 907 637 186 46 46 chr4 42227099 42227229 -113402891 + B1_Mur1 SINE Alu 12 141 -8 3 907 608 120 10 0 chr4 42227232 42227332 -113402788 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 907 276 30 0 0 chr4 42227345 42227378 -113402742 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 3 907 721 167 79 8 chr4 42227499 42227626 -113402494 - B1_Mur2 SINE Alu 0 149 14 3 907 357 282 13 0 chr4 42227936 42228014 -113402106 + B1_Mus2 SINE Alu 1 79 -68 3 907 366 357 87 14 chr4 42228026 42228139 -113401981 + L1M4 LINE L1 988 1117 -5425 3 907 216 0 0 0 chr4 42228139 42228163 -113401957 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 907 366 357 87 14 chr4 42228163 42228325 -113401795 + L1M4 LINE L1 1118 1283 -5259 3 907 287 269 58 6 chr4 42228347 42228443 -113401677 + PB1D7 SINE Alu 4 100 -20 3 907 249 301 14 0 chr4 42228378 42228451 -113401669 + ID_B1 SINE B4 113 186 -38 3 907 436 239 72 36 chr4 42228542 42228681 -113401439 + L1M4 LINE L1 3568 3711 -2933 3 907 958 202 57 5 chr4 42228773 42228936 -113401184 + B3 SINE B2 8 179 -37 3 907 807 66 0 0 chr4 42228936 42229042 -113401078 + (TA)n Simple_repeat Simple_repeat 1 106 0 3 907 958 202 57 5 chr4 42229042 42229072 -113401048 + B3 SINE B2 180 211 -5 3 907 661 314 36 66 chr4 42229087 42229164 -113400956 + L1M4 LINE L1 3764 3837 -2807 3 907 982 110 20 27 chr4 42229164 42229313 -113400807 + B1_Mur3 SINE Alu 1 148 -1 3 907 755 282 51 52 chr4 42229313 42229824 -113400296 + L1M4 LINE L1 3838 4334 -2310 3 907 585 42 0 0 chr4 42229900 42229972 -113400148 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 907 699 135 63 0 chr4 42229987 42230098 -113400022 + B1_Mur2 SINE Alu 26 143 -6 3 907 186 43 0 0 chr4 42230100 42230123 -113399997 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 907 651 277 58 0 chr4 42230123 42230365 -113399755 + L1M4 LINE L1 4850 5105 -1539 3 907 269 193 0 0 chr4 42230366 42230423 -113399697 + Lx9 LINE L1 7587 7643 -1 3 907 388 225 12 0 chr4 42230451 42230531 -113399589 + B3A SINE B2 1 81 -117 3 907 227 278 158 8 chr4 42230670 42230797 -113399323 + L1M4 LINE L1 5636 5781 -863 3 907 343 106 0 0 chr4 42232191 42232238 -113397882 - HAL1-3A_ME LINE L1 -836 2022 1976 3 907 822 195 0 0 chr4 42232239 42232461 -113397659 + (TG)n Simple_repeat Simple_repeat 1 222 0 3 907 307 309 131 26 chr4 42232588 42232741 -113397379 - B4A SINE B4 -122 170 2 3 907 198 222 189 66 chr4 42232819 42232925 -113397195 + L3 LINE CR1 126 244 -4245 3 907 297 0 0 0 chr4 42233389 42233422 -113396698 + (A)n Simple_repeat Simple_repeat 1 33 0 3 907 326 299 73 15 chr4 42233812 42233948 -113396172 + B1F SINE Alu 1 144 -5 3 907 297 267 27 0 chr4 42233971 42234046 -113396074 + ID4_ SINE ID 3 79 -4 3 907 220 250 78 0 chr4 42234646 42234710 -113395410 - ID4_ SINE ID -14 69 1 3 907 1277 88 5 21 chr4 42234753 42234939 -113395181 + B2_Mm2 SINE B2 1 183 -12 3 907 434 253 35 0 chr4 42234943 42235030 -113395090 - B3A SINE B2 -27 171 82 3 907 459 48 0 0 chr4 42235076 42235138 -113394982 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 907 1064 77 14 7 chr4 42235164 42235308 -113394812 + B1_Mm SINE Alu 3 147 0 3 907 2038 69 0 42 chr4 42235347 42235633 -113394487 + RMER6A LTR ERVK 57 330 -426 3 907 450 0 0 0 chr4 42235659 42235709 -113394411 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 907 1309 154 47 108 chr4 42235716 42236059 -113394061 - RLTRETN_Mm LTR ERVK 0 322 1 3 907 2449 138 51 20 chr4 42236059 42236493 -113393627 + RMER6A LTR ERVK 309 756 0 3 907 183 80 0 0 chr4 42236800 42236825 -113393295 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 907 258 370 43 0 chr4 42236877 42236969 -113393151 - RSINE1 SINE B4 -67 98 3 3 907 418 363 0 0 chr4 42236978 42237124 -113392996 - B1F SINE Alu -3 146 1 3 907 369 0 0 0 chr4 42237177 42237218 -113392902 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 907 458 328 78 21 chr4 42237256 42237449 -113392671 - B4A SINE B4 -21 271 68 3 907 219 114 0 0 chr4 42238819 42238854 -113391266 + (CCCCCA)n Simple_repeat Simple_repeat 3 37 0 3 907 423 312 76 28 chr4 42238974 42239185 -113390935 - MT2A LTR ERVL -105 428 208 3 907 402 312 0 55 chr4 42239200 42239239 -113390881 - MT2A LTR ERVL -369 164 27 3 907 449 299 0 0 chr4 42239239 42239346 -113390774 - MTE2b LTR MaLR -246 133 27 3 907 405 0 0 0 chr4 42239511 42239556 -113390564 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 907 711 291 0 0 chr4 42239584 42239732 -113390388 - B3A SINE B2 -39 159 12 3 907 948 260 45 5 chr4 42239730 42239950 -113390170 - B4A SINE B4 -63 229 1 3 907 1176 283 194 10 chr4 42239956 42240545 -113389575 + L2a LINE L2 2208 2904 -515 3 907 450 154 0 0 chr4 42240683 42240761 -113389359 + CT-rich Low_complexity Low_complexity 2 79 0 3 907 365 232 49 69 chr4 42240872 42240974 -113389146 - PB1D9 SINE Alu -19 101 2 3 907 977 225 0 11 chr4 42241005 42241194 -113388926 - B3A SINE B2 -5 193 7 3 907 536 286 90 10 chr4 42241197 42241398 -113388722 + L2a LINE L2 3203 3419 -7 3 907 313 328 89 10 chr4 42241642 42241845 -113388275 - ERVL-E-int LTR ERVL -1879 3788 3570 3 907 257 151 40 79 chr4 42242115 42242216 -113387904 + (TTTG)n Simple_repeat Simple_repeat 2 98 0 3 907 225 0 0 0 chr4 42242226 42242251 -113387869 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 907 752 215 0 0 chr4 42242254 42242398 -113387722 - B3A SINE B2 -54 144 1 3 907 438 321 14 14 chr4 42243244 42243383 -113386737 + MER21B LTR ERV1 551 689 -174 3 907 1064 68 0 129 chr4 42244087 42244257 -113385863 + B1_Mus1 SINE Alu 1 148 0 3 907 201 121 0 0 chr4 42244257 42244290 -113385830 + (A)n Simple_repeat Simple_repeat 1 33 0 3 907 203 170 0 21 chr4 42244546 42244594 -113385526 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 907 643 246 210 46 chr4 42245042 42245115 -113385005 - MER21B LTR ERV1 -323 540 462 3 907 2347 136 43 8 chr4 42245115 42245485 -113384635 - ORR1C2 LTR MaLR -1 383 1 3 907 643 246 210 46 chr4 42245485 42245692 -113384428 - MER21B LTR ERV1 -402 461 214 3 907 234 105 0 0 chr4 42245839 42245877 -113384243 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 3 907 479 228 171 0 chr4 42245877 42246000 -113384120 - B3A SINE B2 -54 144 1 3 907 485 158 0 0 chr4 42246053 42246135 -113383985 + B1_Mur2 SINE Alu 68 149 0 3 907 211 220 0 17 chr4 42246522 42246561 -113383559 + (TTA)n Simple_repeat Simple_repeat 1 38 0 3 907 1162 42 7 40 chr4 42246561 42246711 -113383409 - B1_Mm SINE Alu 0 147 3 4 907 211 220 0 17 chr4 42246711 42246731 -113383389 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 907 1881 123 92 0 chr4 42246808 42247100 -113383020 - ORR1A2 LTR MaLR -8 319 1 4 907 444 286 0 106 chr4 42247100 42247233 -113382887 + RSINE1 SINE B4 47 164 -1 4 907 959 264 22 40 chr4 42247316 42247592 -113382528 + B4A SINE B4 3 273 -19 4 907 218 32 32 0 chr4 42249224 42249255 -113380865 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 4 907 475 204 9 36 chr4 42249256 42249368 -113380752 - PB1 SINE Alu -1 126 18 4 907 273 368 56 66 chr4 42249419 42249617 -113380503 + MamRep38 DNA hAT 95 290 -5 4 907 344 324 164 49 chr4 42250922 42251097 -113379023 + L2c LINE L2 3047 3239 -148 4 907 231 125 0 0 chr4 42251097 42251137 -113378983 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 907 344 324 164 49 chr4 42251137 42251266 -113378854 + L2c LINE L2 3240 3386 -1 4 907 371 259 119 11 chr4 42253937 42254094 -113376026 - MIR SINE MIR -96 166 1 4 907 420 337 94 20 chr4 42254155 42254359 -113375761 - MIRb SINE MIR -7 261 46 4 907 189 74 0 0 chr4 42255078 42255105 -113375015 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 4 907 216 380 0 0 chr4 42255616 42255687 -113374433 - L2b LINE L2 -40 3335 3265 4 907 433 409 70 29 chr4 42255950 42256192 -113373928 + MER115 DNA Tip100 144 395 -298 4 907 1005 41 0 0 chr4 42256317 42256440 -113373680 + B1_Mus2 SINE Alu 25 147 0 4 907 404 211 57 86 chr4 42256318 42256458 -113373662 + B4A SINE B4 111 246 -46 4 907 255 135 0 0 chr4 42256463 42256500 -113373620 + (GAA)n Simple_repeat Simple_repeat 3 39 0 4 907 429 188 0 0 chr4 42256500 42256585 -113373535 + GA-rich Low_complexity Low_complexity 2 86 0 4 907 552 126 0 0 chr4 42256879 42256966 -113373154 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 4 907 448 411 36 62 chr4 42257000 42257306 -113372814 - MLT1N2 LTR MaLR -249 313 16 4 907 180 0 0 0 chr4 42257481 42257501 -113372619 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 907 494 248 9 17 chr4 42257501 42257616 -113372504 - MLT1A LTR MaLR -35 339 226 4 907 249 57 0 0 chr4 42257625 42257660 -113372460 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 907 530 215 19 0 chr4 42257741 42257848 -113372272 - ID_B1 SINE B4 0 224 116 4 907 304 297 67 8 chr4 42257848 42257860 -113372260 - B1_Mur1 SINE Alu 0 149 24 4 907 1338 43 0 0 chr4 42257883 42258044 -113372076 + B2_Mm2 SINE B2 2 162 -33 4 907 348 24 0 0 chr4 42258044 42258085 -113372035 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 907 724 212 0 20 chr4 42258753 42258902 -113371218 + B1_Mur1 SINE Alu 2 147 -2 4 907 321 273 70 122 chr4 42259031 42259244 -113370876 + HAL1-3A_ME LINE L1 2237 2438 -420 4 907 733 112 0 53 chr4 42259247 42259436 -113370684 + GA-rich Low_complexity Low_complexity 1 179 0 4 907 359 335 149 39 chr4 42259443 42260052 -113370068 - L2b LINE L2 -384 3035 2360 4 907 4469 18 0 0 chr4 42260507 42261000 -113369120 - MT2_Mm LTR ERVL 0 493 1 4 907 454 291 32 26 chr4 42261739 42261765 -113368355 + ID_B1 SINE B4 68 223 -1 4 907 601 202 47 0 chr4 42261765 42261894 -113368226 + B1F SINE Alu 14 148 -1 4 907 998 148 37 37 chr4 42261912 42262102 -113368018 + B2_Mm2 SINE B2 2 191 -4 4 907 210 321 8 125 chr4 42262323 42262451 -113367669 + B1F1 SINE Alu 1 113 -36 4 907 505 152 0 19 chr4 42262568 42262675 -113367445 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 907 1103 65 14 0 chr4 42262884 42263022 -113367098 + B1_Mus1 SINE Alu 1 140 -8 4 907 1017 216 25 5 chr4 42263181 42263381 -113366739 + B3 SINE B2 11 214 -2 4 907 351 286 0 67 chr4 42263449 42263554 -113366566 - ID_B1 SINE B4 -2 222 125 4 907 213 295 0 0 chr4 42263555 42263616 -113366504 + CT-rich Low_complexity Low_complexity 1 61 0 4 907 454 259 61 26 chr4 42263621 42263736 -113366384 - ID_B1 SINE B4 -77 147 29 4 907 750 179 8 0 chr4 42263839 42263962 -113366158 + B3A SINE B2 2 125 -73 4 907 222 91 0 0 chr4 42263976 42264009 -113366111 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 907 1095 223 36 0 chr4 42264679 42264926 -113365194 + Lx6 LINE L1 7179 7434 -26 4 907 545 196 164 82 chr4 42265287 42265470 -113364650 - B3A SINE B2 0 198 1 4 907 1623 221 98 78 chr4 42265485 42266034 -113364086 - Lx8 LINE L1 0 7473 6914 4 907 250 278 81 73 chr4 42266164 42266288 -113363832 + ID_B1 SINE B4 51 175 -49 4 907 424 227 20 30 chr4 42266204 42266304 -113363816 + PB1D10 SINE Alu 12 110 -7 4 907 740 212 30 0 chr4 42266315 42266447 -113363673 + B1_Mur2 SINE Alu 1 136 -13 4 907 216 0 0 0 chr4 42266448 42266472 -113363648 + (ATG)n Simple_repeat Simple_repeat 3 26 0 4 907 233 234 83 21 chr4 42266745 42266841 -113363279 + MER90a LTR ERV1 1 102 -512 4 907 681 329 120 14 chr4 42267391 42267774 -113362346 + MER70A LTR ERVL 11 472 0 4 907 431 217 120 17 chr4 42268245 42268362 -113361758 - MTE2a LTR MaLR 0 379 251 4 907 661 228 145 6 chr4 42268420 42268592 -113361528 - B3A SINE B2 0 198 3 4 907 1351 46 114 0 chr4 42268678 42268853 -113361267 + B2_Mm2 SINE B2 1 195 0 4 907 203 61 0 29 chr4 42271015 42271049 -113359071 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 907 278 261 106 64 chr4 42271064 42271158 -113358962 - RSINE1 SINE B4 -31 134 37 4 907 2688 58 3 6 chr4 42271335 42271663 -113358457 + ORR1A2 LTR MaLR 1 327 0 4 907 696 24 0 0 chr4 42271759 42271841 -113358279 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 907 486 0 0 0 chr4 42271841 42271894 -113358226 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 907 478 206 167 0 chr4 42271903 42272005 -113358115 - B4A SINE B4 -14 278 160 4 907 291 207 146 0 chr4 42272016 42272098 -113358022 - B4 SINE B4 -193 99 6 4 907 600 272 63 22 chr4 42272413 42272635 -113357485 - L1MA4 LINE L1 -365 5935 5705 4 907 403 281 15 90 chr4 42272828 42272873 -113357247 - RSINE1 SINE B4 -15 150 109 4 907 5785 145 17 7 chr4 42272873 42273820 -113356300 + RMER17B LTR ERVK 3 958 0 4 907 403 281 15 90 chr4 42273820 42273907 -113356213 - RSINE1 SINE B4 -57 108 28 4 907 222 37 0 0 chr4 42273992 42274019 -113356101 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 4 907 813 184 0 0 chr4 42274022 42274158 -113355962 - B1_Mur2 SINE Alu 0 149 14 4 907 530 259 26 39 chr4 42274158 42274175 -113355945 - ID_B1 SINE B4 0 224 74 4 907 790 192 23 28 chr4 42274544 42274721 -113355399 + ORR1A1 LTR MaLR 1 176 -170 4 907 588 247 49 12 chr4 42275626 42275790 -113354330 + Lx7 LINE L1 6872 7041 -655 4 907 1018 125 0 11 chr4 42275815 42275993 -113354127 + (TTCTC)n Simple_repeat Simple_repeat 2 177 0 4 907 1017 116 66 12 chr4 42276008 42276174 -113353946 - B2_Mm2 SINE B2 -19 176 2 4 907 2421 78 25 6 chr4 42276528 42276849 -113353271 - ORR1A2 LTR MaLR 0 327 1 4 907 281 250 130 49 chr4 42276939 42277124 -113352996 - L1MC2 LINE L1 -25 6319 6120 4 907 225 0 0 0 chr4 42277680 42277705 -113352415 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 907 244 210 169 5 chr4 42277705 42277795 -113352325 - PB1D10 SINE Alu -1 126 5 4 907 1952 233 113 26 chr4 42277969 42278051 -113352069 - Lx8 LINE L1 -7 7466 7382 4 907 2283 90 71 20 chr4 42278051 42278401 -113351719 - RLTR9A LTR ERVK 0 368 1 4 907 1952 233 113 26 chr4 42278401 42278961 -113351159 - Lx8 LINE L1 -92 7381 6768 4 907 1051 216 95 109 chr4 42278963 42278996 -113351124 - ORR1E LTR MaLR -2 357 325 4 907 639 71 0 0 chr4 42278996 42279081 -113351039 + (GGA)n Simple_repeat Simple_repeat 3 87 0 4 907 1051 216 95 109 chr4 42279081 42279385 -113350735 - ORR1E LTR MaLR -35 324 27 4 907 611 195 34 0 chr4 42279481 42279599 -113350521 - B3 SINE B2 -10 206 85 4 907 603 162 105 0 chr4 42279602 42279707 -113350413 - PB1D10 SINE Alu -1 116 1 4 907 1563 258 102 25 chr4 42279819 42280340 -113349780 + Lx8 LINE L1 6669 7229 -244 4 907 3375 222 67 72 chr4 42280361 42281431 -113348689 + RMER1B Other Other 2 1066 0 4 907 475 241 28 0 chr4 42281530 42281639 -113348481 + B4 SINE B4 84 198 -94 4 907 1058 117 12 0 chr4 42281740 42281903 -113348217 + RMER1B Other Other 593 757 -309 4 907 250 268 0 0 chr4 42281904 42281960 -113348160 - RSINE1 SINE B4 -108 57 2 4 907 293 318 36 18 chr4 42282031 42282143 -113347977 - MLT1A1 LTR MaLR -294 114 1 4 907 361 208 75 56 chr4 42282231 42282338 -113347782 - RMER1B Other Other -463 603 495 4 907 419 234 0 0 chr4 42282338 42282415 -113347705 + RSINE1 SINE B4 55 131 -34 4 907 231 321 84 24 chr4 42282664 42282747 -113347373 + MTE2a LTR MaLR 280 367 -12 4 907 243 0 0 0 chr4 42283104 42283131 -113346989 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 907 368 213 0 39 chr4 42284048 42284126 -113345994 + RLTR11A2 LTR ERVK 1 75 -452 4 907 2785 220 35 44 chr4 42284130 42284901 -113345219 + MYSERV6-int LTR ERVK 8018 8781 -178 4 907 596 249 53 21 chr4 42285001 42285190 -113344930 + MYSERV-int LTR ERVK 6354 6548 -2 4 907 985 263 158 64 chr4 42285212 42285618 -113344502 + RLTR11A2 LTR ERVK 19 462 -65 4 907 1374 77 11 0 chr4 42285805 42285987 -113344133 + B2_Mm1t SINE B2 2 185 -8 4 907 303 285 33 83 chr4 42287834 42288014 -113342106 + L1MEe LINE L1 664 834 -4020 4 907 618 229 25 0 chr4 42292174 42292296 -113337824 - B1_Mur1 SINE Alu -18 131 7 4 907 261 159 0 0 chr4 42293388 42293451 -113336669 + T-rich Low_complexity Low_complexity 1 63 0 4 907 500 127 38 0 chr4 42293657 42293736 -113336384 + MTD LTR MaLR 1 82 -337 4 907 817 226 60 11 chr4 42293733 42293916 -113336204 + MTD LTR MaLR 226 417 -2 4 907 467 229 111 0 chr4 42294195 42294339 -113335781 - Lx9 LINE L1 -227 7417 7258 4 907 427 177 241 0 chr4 42294337 42294478 -113335642 + Lx9 LINE L1 7449 7623 -21 4 907 236 221 20 131 chr4 42294706 42294805 -113335315 + MLT1A1 LTR MaLR 316 403 -5 5 907 307 292 30 148 chr4 42294837 42294893 -113335227 + L1M5 LINE L1 5024 5077 -1069 5 907 288 270 14 0 chr4 42294893 42294967 -113335153 - ID4 SINE ID -7 76 2 5 907 307 292 30 148 chr4 42294967 42295079 -113335041 + L1M5 LINE L1 5078 5172 -974 5 907 1661 194 10 10 chr4 42295326 42295638 -113334482 - MTC LTR MaLR 0 421 110 5 907 760 194 14 27 chr4 42295837 42295985 -113334135 - B1_Mus1 SINE Alu -1 147 2 5 907 584 214 17 0 chr4 42296346 42296463 -113333657 - MTC LTR MaLR -299 120 2 5 907 1988 112 79 38 chr4 42296630 42296973 -113333147 - ORR1B2 LTR MaLR -8 359 3 5 907 486 0 0 0 chr4 42297157 42297211 -113332909 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 907 1228 250 22 29 chr4 42297215 42297487 -113332633 - B4 SINE B4 -21 271 2 5 907 1382 129 5 5 chr4 42297952 42298163 -113331957 + MTC LTR MaLR 1 211 -210 5 907 2113 153 50 0 chr4 42298163 42298462 -113331658 + Lx5 LINE L1 6598 6898 -152 5 907 252 0 0 0 chr4 42298462 42298490 -113331630 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 907 2113 133 89 17 chr4 42298490 42298594 -113331526 + Lx5 LINE L1 6899 7053 -5 5 907 1325 90 6 6 chr4 42298615 42298793 -113331327 + B2_Mm1t SINE B2 2 179 -14 5 907 296 35 0 50 chr4 42298860 42298920 -113331200 + B2_Mm2 SINE B2 137 193 -2 5 907 21 0 0 0 chr4 42298921 42298942 -113331178 + AT_rich Low_complexity Low_complexity 1 21 0 5 907 429 36 0 0 chr4 42298965 42299020 -113331100 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 5 907 1065 169 123 0 chr4 42299020 42299215 -113330905 + MTC LTR MaLR 203 421 0 5 907 315 0 0 0 chr4 42299544 42299579 -113330541 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 907 21 0 0 0 chr4 42299888 42299909 -113330211 + AT_rich Low_complexity Low_complexity 1 21 0 5 907 358 222 0 0 chr4 42300365 42300428 -113329692 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 5 907 259 333 43 0 chr4 42300428 42300458 -113329662 + BC1_Mm scRNA scRNA 8 104 -48 5 907 546 241 193 35 chr4 42300526 42300780 -113329340 + L1M4b LINE L1 2986 3279 -4055 5 907 1039 171 82 39 chr4 42300807 42301014 -113329106 + B3 SINE B2 1 216 0 5 907 201 39 0 0 chr4 42301080 42301106 -113329014 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 907 323 73 0 0 chr4 42301113 42301154 -113328966 - B1_Mus2 SINE Alu -106 41 1 5 907 1249 225 144 22 chr4 42301247 42301415 -113328705 + MTD LTR MaLR 8 194 -225 5 907 1317 82 0 0 chr4 42301415 42301770 -113328350 + (CA)n Simple_repeat Simple_repeat 1 355 0 5 907 1249 225 144 22 chr4 42301770 42301954 -113328166 + MTD LTR MaLR 195 403 -16 5 907 1293 83 0 0 chr4 42302056 42302236 -113327884 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 907 1019 240 108 4 chr4 42302240 42302491 -113327629 - B4A SINE B4 -14 278 2 5 907 285 263 43 65 chr4 42302612 42302697 -113327423 + ID_B1 SINE B4 9 136 -88 5 907 372 152 0 33 chr4 42302697 42302758 -113327362 + B1_Mur4 SINE Alu 2 60 -90 5 907 285 263 43 65 chr4 42302758 42302770 -113327350 + ID_B1 SINE B4 137 157 -67 5 907 445 345 6 6 chr4 42302780 42303013 -113327107 + G-rich Low_complexity Low_complexity 1 233 0 5 907 904 186 11 17 chr4 42302898 42303078 -113327042 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 5 907 657 124 29 0 chr4 42303081 42303186 -113326934 + B1_Mus2 SINE Alu 40 147 0 5 907 387 0 0 0 chr4 42303190 42303233 -113326887 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 907 214 216 19 19 chr4 42304137 42304189 -113325931 + GA-rich Low_complexity Low_complexity 2 53 0 5 907 217 167 18 18 chr4 42304898 42304953 -113325167 + C-rich Low_complexity Low_complexity 5 59 0 5 907 2424 56 0 3 chr4 42304980 42305286 -113324834 - L1Md_F2 LINE L1 0 6582 6278 5 907 442 259 86 0 chr4 42305291 42305407 -113324713 - B1_Mur1 SINE Alu 0 149 24 5 907 1192 75 0 0 chr4 42305465 42305612 -113324508 - B1_Mus2 SINE Alu 0 147 1 5 907 2254 126 12 3 chr4 42305983 42306326 -113323794 - ORR1A1 LTR MaLR 0 346 1 5 907 587 238 26 39 chr4 42306695 42306712 -113323408 + ID_B1 SINE B4 74 224 0 5 907 849 169 0 0 chr4 42306712 42306848 -113323272 + B1_Mur2 SINE Alu 14 149 0 5 907 450 313 7 64 chr4 42306926 42307022 -113323098 + RSINE1 SINE B4 19 108 -57 5 907 5445 146 43 5 chr4 42307022 42307945 -113322175 - RMER17B LTR ERVK 0 958 1 5 907 450 313 7 64 chr4 42307945 42307988 -113322132 + RSINE1 SINE B4 109 150 -15 5 907 564 281 63 22 chr4 42308181 42308403 -113321717 + L1MA4 LINE L1 5705 5935 -365 5 907 291 207 146 0 chr4 42308720 42308802 -113321318 + B4 SINE B4 6 99 -193 5 907 478 206 167 0 chr4 42308813 42308915 -113321205 + B4A SINE B4 160 278 -14 5 907 450 0 0 0 chr4 42308924 42308974 -113321146 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 907 399 21 0 0 chr4 42308974 42309021 -113321099 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 907 2664 61 3 6 chr4 42309119 42309447 -113320673 - ORR1A2 LTR MaLR 0 327 1 5 907 729 261 57 0 chr4 42310149 42310306 -113319814 + B3 SINE B2 1 166 -50 5 907 451 196 118 5 chr4 42310311 42310417 -113319703 - B1_Mur3 SINE Alu -30 119 7 5 907 1218 124 11 0 chr4 42310781 42310958 -113319162 + B2_Mm1t SINE B2 1 179 -14 5 907 340 142 0 39 chr4 42311024 42311091 -113319029 + B2_Mm2 SINE B2 47 109 -107 5 907 201 39 0 0 chr4 42311106 42311132 -113318988 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 907 885 246 48 99 chr4 42311569 42311625 -113318495 - ORR1E LTR MaLR 0 359 304 5 907 894 132 13 53 chr4 42311625 42311777 -113318343 + B1_Mus2 SINE Alu 1 146 -1 5 907 885 246 48 99 chr4 42311777 42312095 -113318025 - ORR1E LTR MaLR -56 303 4 5 907 797 172 31 0 chr4 42312258 42312421 -113317699 - Lx5 LINE L1 -3 7047 6880 5 907 1253 180 9 9 chr4 42312463 42312676 -113317444 - B3 SINE B2 -3 213 1 5 907 303 71 0 0 chr4 42312893 42312935 -113317185 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 5 907 1131 70 0 0 chr4 42312937 42313095 -113317025 + (TCC)n Simple_repeat Simple_repeat 2 159 0 5 907 857 144 53 0 chr4 42313095 42313227 -113316893 - B1_Mm SINE Alu -8 139 1 5 907 329 388 68 21 chr4 42313650 42313842 -113316278 + L1MD2 LINE L1 126 326 -6221 5 907 974 321 75 8 chr4 42313927 42314444 -113315676 + L1MD2 LINE L1 575 1126 -5514 5 907 845 171 29 0 chr4 42314561 42314701 -113315419 + B1_Mur2 SINE Alu 1 144 -5 5 907 786 286 43 13 chr4 42314725 42315117 -113315003 + L1MD2 LINE L1 1641 2085 -4555 5 907 657 265 201 22 chr4 42315196 42315498 -113314622 - MTEa LTR MaLR -21 338 1 5 907 343 272 12 0 chr4 42315511 42315592 -113314528 - ID4 SINE ID 0 83 2 5 907 237 319 137 11 chr4 42315692 42315977 -113314143 + L1MD2 LINE L1 5079 5399 -1145 5 907 337 250 155 6 chr4 42316057 42316218 -113313902 + L1M4 LINE L1 4978 5162 -984 5 907 454 306 62 62 chr4 42316275 42316467 -113313653 + B3A SINE B2 6 197 -1 5 907 2534 118 170 3 chr4 42316570 42316952 -113313168 - RLTR41 LTR ERV1 0 446 1 5 907 516 308 22 22 chr4 42317049 42317287 -113312833 - RLTR6-int LTR ERV1 -90 7688 7476 5 907 1937 288 29 8 chr4 42317796 42318557 -113311563 - MuRRS4-int LTR ERV1 -1048 4015 3533 5 907 519 367 4 4 chr4 42318954 42319233 -113310887 - MuLV-int LTR ERV1 -3337 4269 3991 5 907 393 237 91 75 chr4 42319412 42319599 -113310521 - MuRRS4-int LTR ERV1 -5386 2392 2079 5 907 702 105 0 0 chr4 42319788 42319893 -113310227 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 5 907 13294 71 26 14 chr4 42320061 42322305 -113307815 - L1VL2 LINE L1 -628 2987 716 5 907 245 138 0 97 chr4 42322791 42322863 -113307257 + G-rich Low_complexity Low_complexity 2 66 0 5 907 24 0 0 0 chr4 42322866 42322890 -113307230 + GC_rich Low_complexity Low_complexity 1 24 0 5 907 189 196 0 0 chr4 42323059 42323105 -113307015 + (CGGG)n Simple_repeat Simple_repeat 4 49 0 5 907 255 265 0 28 chr4 42324224 42324376 -113305744 + GA-rich Low_complexity Low_complexity 1 147 0 5 907 214 269 0 0 chr4 42324789 42324841 -113305279 - L3b LINE CR1 -191 291 240 5 907 522 0 0 0 chr4 42324847 42324905 -113305215 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 907 186 219 0 0 chr4 42326168 42326200 -113303920 + MIRm SINE MIR 122 153 -123 5 907 216 241 103 0 chr4 42326172 42326230 -113303890 + MIRb SINE MIR 126 189 -79 5 907 351 0 0 0 chr4 42326562 42326601 -113303519 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 907 254 368 52 13 chr4 42326660 42326774 -113303346 - MIR SINE MIR -13 249 133 5 907 318 50 0 0 chr4 42326774 42326814 -113303306 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 907 254 368 52 13 chr4 42326814 42326853 -113303267 - MIR SINE MIR -130 132 90 5 907 734 198 46 118 chr4 42327201 42327396 -113302724 - B3 SINE B2 0 216 36 5 907 749 210 116 16 chr4 42327423 42327612 -113302508 - B3 SINE B2 -8 208 1 5 907 225 0 0 0 chr4 42328387 42328412 -113301708 + (T)n Simple_repeat Simple_repeat 1 25 0 5 907 435 78 0 0 chr4 42329964 42330028 -113300092 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 907 344 129 0 16 chr4 42330893 42330956 -113299164 + MER121 Unknown Unknown 133 194 -218 5 907 180 0 0 0 chr4 42332963 42332983 -113297137 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 5 907 414 0 0 0 chr4 42333985 42334031 -113296089 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 907 540 0 0 0 chr4 42334287 42334347 -113295773 + (CCA)n Simple_repeat Simple_repeat 3 62 0 5 907 195 100 0 0 chr4 42334693 42334723 -113295397 + (CCG)n Simple_repeat Simple_repeat 2 31 0 5 907 204 111 0 0 chr4 42334772 42334808 -113295312 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 5 907 201 234 26 86 chr4 42334824 42334941 -113295179 + C-rich Low_complexity Low_complexity 6 115 0 5 907 405 0 0 0 chr4 42335678 42335723 -113294397 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 908 369 109 0 0 chr4 42336332 42336387 -113293733 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 908 657 0 0 0 chr4 42336739 42336812 -113293308 + (TGG)n Simple_repeat Simple_repeat 2 74 0 5 908 224 182 0 154 chr4 42339660 42339725 -113290395 - L2a LINE L2 -31 3395 3341 5 908 331 307 65 0 chr4 42339735 42339881 -113290239 + L1M5 LINE L1 5504 5658 -582 5 908 190 344 0 0 chr4 42340178 42340239 -113289881 - L2a LINE L2 -92 3334 3274 5 908 423 0 0 0 chr4 42340552 42340599 -113289521 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 908 822 197 14 0 chr4 42340647 42340789 -113289331 - B1_Mur3 SINE Alu -5 144 1 6 908 491 297 22 7 chr4 42340805 42340944 -113289176 - B1F2 SINE Alu -8 141 1 6 908 947 208 22 17 chr4 42341313 42341494 -113288626 - B3A SINE B2 -16 182 1 6 908 273 164 18 18 chr4 42342284 42342340 -113287780 - L2c LINE L2 -4 3383 3328 6 908 198 218 53 35 chr4 42342357 42342414 -113287706 - L2c LINE L2 -852 2567 2510 6 908 432 0 0 0 chr4 42342883 42342931 -113287189 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 908 260 278 139 0 chr4 42343683 42343791 -113286329 - L2a LINE L2 -24 3402 3280 6 908 220 316 119 31 chr4 42343796 42343989 -113286131 - L2a LINE L2 -256 3119 2910 6 908 333 270 94 11 chr4 42344047 42344164 -113285956 - B1F SINE Alu -1 116 2 6 908 411 288 34 91 chr4 42346070 42346246 -113283874 + B4 SINE B4 1 166 -126 6 908 231 271 23 34 chr4 42346273 42346361 -113283759 + RSINE1 SINE B4 78 164 -1 6 908 248 91 29 29 chr4 42346378 42346446 -113283674 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 908 252 248 209 9 chr4 42346683 42346793 -113283327 - MIRb SINE MIR -103 165 34 6 908 223 214 0 0 chr4 42348455 42348497 -113281623 - B4 SINE B4 -209 83 42 6 908 209 194 0 0 chr4 42349755 42349791 -113280329 + CT-rich Low_complexity Low_complexity 1 36 0 6 908 408 71 0 0 chr4 42350318 42350374 -113279746 + (CCCCG)n Simple_repeat Simple_repeat 1 56 0 6 908 622 203 67 8 chr4 42350537 42350671 -113279449 + B1_Mur1 SINE Alu 7 148 -1 6 908 1222 289 47 61 chr4 42351970 42352580 -113277540 - RLTR1D LTR ERV1 -13 611 52 6 908 253 261 106 64 chr4 42352747 42352841 -113277279 + RSINE1 SINE B4 37 134 -31 6 908 185 65 0 31 chr4 42352856 42352888 -113277232 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 908 201 320 0 0 chr4 42353897 42353972 -113276148 + C-rich Low_complexity Low_complexity 5 79 0 6 908 1367 73 40 0 chr4 42355041 42355218 -113274902 - B2_Mm2 SINE B2 -11 184 1 6 908 706 216 145 6 chr4 42355304 42355476 -113274644 + B3A SINE B2 3 198 0 6 908 403 217 120 17 chr4 42355534 42355651 -113274469 + MTE2a LTR MaLR 251 379 0 6 908 621 329 120 14 chr4 42356130 42356513 -113273607 - MER70A LTR ERVL 0 472 11 6 908 351 0 0 0 chr4 42357375 42357414 -113272706 + (CAT)n Simple_repeat Simple_repeat 3 41 0 6 908 713 220 30 0 chr4 42357415 42357547 -113272573 - B1_Mur3 SINE Alu -13 136 1 6 908 389 227 20 30 chr4 42357558 42357658 -113272462 - PB1D10 SINE Alu -7 110 12 6 908 1697 225 97 79 chr4 42357821 42358377 -113271743 + Lx8 LINE L1 6908 7473 0 6 908 547 196 164 82 chr4 42358392 42358575 -113271545 + B3A SINE B2 1 198 0 6 908 1162 223 36 0 chr4 42358936 42359183 -113270937 - Lx6 LINE L1 -26 7434 7179 6 908 240 86 0 0 chr4 42359853 42359888 -113270232 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 908 706 179 8 0 chr4 42359902 42360025 -113270095 - B3A SINE B2 -73 125 2 6 908 424 259 61 26 chr4 42360128 42360243 -113269877 + ID_B1 SINE B4 29 147 -77 6 908 340 286 0 67 chr4 42360292 42360397 -113269723 + ID_B1 SINE B4 125 222 -2 6 908 968 211 25 5 chr4 42360465 42360665 -113269455 - B3 SINE B2 -2 214 11 6 908 958 58 14 48 chr4 42360824 42360885 -113269235 - B1_Mus1 SINE Alu -8 140 84 6 908 2937 78 78 48 chr4 42360885 42361346 -113268774 + IAPLTR2_Mm LTR ERVK 1 475 0 6 908 958 58 14 48 chr4 42361346 42361429 -113268691 - B1_Mus1 SINE Alu -65 83 1 6 908 310 185 0 24 chr4 42361639 42361722 -113268398 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 908 1060 141 37 37 chr4 42362188 42362379 -113267741 - B2_Mm2 SINE B2 -3 192 2 6 908 554 202 47 0 chr4 42362397 42362526 -113267594 - B1F SINE Alu -1 148 14 6 908 393 390 98 35 chr4 42363736 42364337 -113265783 + L2 LINE L2 2360 2998 -421 6 908 593 145 0 58 chr4 42364350 42364540 -113265580 + CT-rich Low_complexity Low_complexity 1 179 0 6 908 558 129 0 67 chr4 42364569 42364905 -113265215 + CT-rich Low_complexity Low_complexity 1 313 0 6 908 701 219 0 20 chr4 42365099 42365248 -113264872 - B1_Mur1 SINE Alu -2 147 2 6 908 276 30 0 0 chr4 42365919 42365952 -113264168 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 908 1257 50 0 0 chr4 42365952 42366113 -113264007 - B2_Mm2 SINE B2 -33 162 2 6 908 281 305 67 8 chr4 42366136 42366148 -113263972 + B1_Mur1 SINE Alu 24 149 0 6 908 496 215 19 0 chr4 42366148 42366255 -113263865 + ID_B1 SINE B4 116 224 0 6 908 462 18 0 0 chr4 42366336 42366391 -113263729 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 908 458 248 9 17 chr4 42366400 42366515 -113263605 + MLT1A LTR MaLR 226 339 -35 6 908 180 0 0 0 chr4 42366515 42366535 -113263585 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 908 398 396 22 74 chr4 42366737 42366966 -113263154 + MLT1N2 LTR MaLR 48 264 -298 6 908 513 84 0 0 chr4 42367050 42367121 -113262999 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 6 908 259 297 40 0 chr4 42367243 42367317 -113262803 - MER115 DNA Tip100 -125 568 492 6 908 500 219 8 0 chr4 42367420 42367543 -113262577 + CT-rich Low_complexity Low_complexity 2 125 0 6 908 952 41 0 0 chr4 42367544 42367667 -113262453 - B1_Mus2 SINE Alu 0 147 25 6 908 382 395 82 26 chr4 42367792 42367987 -113262133 - MER115 DNA Tip100 -298 395 190 6 908 189 74 0 0 chr4 42368879 42368906 -113261214 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 6 908 406 341 80 0 chr4 42369624 42369828 -113260292 + MIRb SINE MIR 46 258 -4 6 908 361 259 119 11 chr4 42369890 42370047 -113260073 + MIR SINE MIR 1 166 -96 6 908 316 332 157 43 chr4 42372718 42372847 -113257273 - L2c LINE L2 -1 3386 3241 6 908 264 100 0 0 chr4 42372847 42372887 -113257233 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 908 316 332 157 43 chr4 42372887 42373062 -113257058 - L2c LINE L2 -147 3240 3047 6 908 445 192 18 54 chr4 42374606 42374731 -113255389 + PB1 SINE Alu 11 126 -1 6 908 305 47 23 0 chr4 42374731 42374774 -113255346 + (CAAAC)n Simple_repeat Simple_repeat 5 48 0 6 908 905 274 18 36 chr4 42376406 42376682 -113253438 - B4A SINE B4 -19 273 3 6 908 410 294 0 106 chr4 42376765 42376898 -113253222 - RSINE1 SINE B4 -1 164 47 6 908 1794 120 92 0 chr4 42376898 42377190 -113252930 + ORR1A2 LTR MaLR 1 319 -8 6 908 211 220 0 17 chr4 42377267 42377287 -113252833 + (TAA)n Simple_repeat Simple_repeat 1 20 0 6 908 1157 42 7 40 chr4 42377287 42377437 -113252683 + B1_Mm SINE Alu 3 147 0 6 908 211 220 0 17 chr4 42377437 42377476 -113252644 + (TAA)n Simple_repeat Simple_repeat 3 40 0 6 908 469 146 0 0 chr4 42377864 42377946 -113252174 - B1_Mur2 SINE Alu 0 149 68 6 908 479 206 167 0 chr4 42377999 42378125 -113251995 + B3A SINE B2 1 147 -51 6 908 381 95 0 0 chr4 42378125 42378188 -113251932 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 908 537 263 187 27 chr4 42378409 42378539 -113251581 + MER21B LTR ERV1 302 461 -402 6 908 2316 154 38 3 chr4 42378539 42378909 -113251211 + ORR1C2 LTR MaLR 1 383 -1 6 908 537 263 187 27 chr4 42378909 42378997 -113251123 + MER21B LTR ERV1 462 555 -308 6 908 419 78 0 15 chr4 42379429 42379494 -113250626 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 908 1259 54 0 0 chr4 42379781 42379929 -113250191 - B1_Mus1 SINE Alu 0 148 1 6 908 415 336 14 14 chr4 42380636 42380784 -113249336 - MER21B LTR ERV1 -174 689 542 6 908 682 231 0 1 chr4 42381624 42381771 -113248349 + B3A SINE B2 1 145 -71 6 908 423 0 0 0 chr4 42381771 42381818 -113248302 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 908 552 301 14 32 chr4 42381818 42381890 -113248230 + B3 SINE B2 146 216 0 6 908 401 339 89 12 chr4 42382139 42382387 -113247733 + ERVL-E-int LTR ERVL 3522 3788 -1879 6 908 507 305 85 5 chr4 42382633 42382834 -113247286 - L2a LINE L2 -7 3419 3203 6 908 918 230 0 11 chr4 42382837 42383026 -113247094 + B3A SINE B2 7 193 -5 6 908 407 211 49 69 chr4 42383057 42383159 -113246961 + PB1D9 SINE Alu 2 101 -19 6 908 489 138 0 0 chr4 42383270 42383350 -113246770 + (GA)n Simple_repeat Simple_repeat 2 81 0 6 908 1074 291 187 3 chr4 42383488 42384077 -113246043 - L2a LINE L2 -515 2904 2208 6 908 908 256 45 5 chr4 42384083 42384303 -113245817 + B4A SINE B4 1 229 -63 6 908 667 291 0 0 chr4 42384301 42384449 -113245671 + B3A SINE B2 12 159 -39 6 908 369 0 0 0 chr4 42384477 42384518 -113245602 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 908 424 340 0 7 chr4 42384678 42384823 -113245297 + MTE2b LTR MaLR 22 165 -214 6 908 361 342 75 25 chr4 42384846 42385047 -113245073 + MT2A LTR ERVL 210 420 -113 6 908 449 326 72 16 chr4 42386547 42386740 -113243380 + B4A SINE B4 68 271 -21 6 908 459 0 0 0 chr4 42386778 42386829 -113243291 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 908 456 356 0 0 chr4 42386884 42387030 -113243090 + B1F SINE Alu 1 146 -3 6 908 236 370 43 0 chr4 42387039 42387131 -113242989 + RSINE1 SINE B4 3 98 -67 6 908 255 61 0 0 chr4 42387183 42387216 -113242904 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 908 2366 144 47 18 chr4 42387523 42387958 -113242162 - RMER6A LTR ERVK 0 756 309 6 908 1198 162 38 99 chr4 42387958 42388301 -113241819 + RLTRETN_Mm LTR ERVK 1 322 0 6 908 522 0 0 0 chr4 42388308 42388366 -113241754 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 908 2123 62 0 25 chr4 42388393 42388674 -113241446 - RMER6A LTR ERVK -426 330 57 6 908 1082 110 0 0 chr4 42388708 42388854 -113241266 - B1_Mus1 SINE Alu 0 148 3 6 908 342 61 0 0 chr4 42388883 42388932 -113241188 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 908 449 235 147 0 chr4 42388978 42389080 -113241040 + B3A SINE B2 82 198 0 6 908 1164 121 5 21 chr4 42389069 42389255 -113240865 - B2_Mm2 SINE B2 -12 183 1 6 908 280 280 27 0 chr4 42389964 42390039 -113240081 - ID4_ SINE ID -4 79 3 6 908 332 299 73 15 chr4 42390061 42390197 -113239923 - B1F SINE Alu -5 144 1 7 908 183 232 189 66 chr4 42391066 42391172 -113238948 - L3 LINE CR1 -4245 244 126 7 908 448 298 192 26 chr4 42391250 42391480 -113238640 + B4A SINE B4 2 269 -23 7 908 307 98 0 0 chr4 42391553 42391594 -113238526 + HAL1-3A_ME LINE L1 1972 2012 -846 7 908 678 211 0 0 chr4 42391600 42391873 -113238247 + (CA)n Simple_repeat Simple_repeat 1 273 0 7 908 341 113 47 31 chr4 42391879 42391943 -113238177 + HAL1-3A_ME LINE L1 1976 2040 -818 7 908 256 244 181 31 chr4 42393328 42393455 -113236665 - L1M4 LINE L1 -863 5283 5138 7 908 388 225 12 0 chr4 42393594 42393674 -113236446 - B3A SINE B2 -117 81 1 7 908 269 193 0 0 chr4 42393702 42393759 -113236361 - Lx9 LINE L1 -1 7643 7587 7 908 635 281 58 0 chr4 42393760 42394002 -113236118 - L1M4 LINE L1 -1539 4607 4352 7 908 186 43 0 0 chr4 42394002 42394025 -113236095 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 908 689 144 63 0 chr4 42394027 42394138 -113235982 - B1_Mur2 SINE Alu -6 143 26 7 908 624 91 0 0 chr4 42394153 42394241 -113235879 + (TC)n Simple_repeat Simple_repeat 1 88 0 7 908 774 294 104 58 chr4 42394267 42394984 -113235136 - L1M4 LINE L1 -2049 4097 3340 7 908 982 110 20 27 chr4 42394984 42395133 -113234987 - B1_Mur3 SINE Alu -1 148 1 7 908 774 294 104 58 chr4 42395133 42395210 -113234910 - L1M4 LINE L1 -2807 3339 3266 7 908 450 53 0 0 chr4 42395238 42395295 -113234825 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 908 570 204 203 7 chr4 42395297 42395435 -113234685 - B3 SINE B2 -44 172 8 7 908 396 0 0 0 chr4 42395447 42395491 -113234629 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 908 414 0 0 0 chr4 42395569 42395615 -113234505 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 908 488 250 53 53 chr4 42395615 42395760 -113234360 - L1M4 LINE L1 -2928 3713 3568 7 908 245 301 14 0 chr4 42395851 42395924 -113234196 - ID_B1 SINE B4 -38 186 113 7 908 273 282 58 6 chr4 42395859 42395955 -113234165 - PB1D7 SINE Alu -20 100 4 7 908 352 304 94 59 chr4 42396009 42396264 -113233856 - L1M4 LINE L1 -5291 1251 988 7 908 340 282 13 0 chr4 42396276 42396354 -113233766 - B1_Mus2 SINE Alu -68 79 1 7 908 682 175 78 16 chr4 42396664 42396792 -113233328 + B1_Mur2 SINE Alu 14 149 0 7 908 201 74 0 0 chr4 42396805 42396832 -113233288 + (T)n Simple_repeat Simple_repeat 1 27 0 7 908 837 161 0 0 chr4 42396947 42397096 -113233024 + CT-rich Low_complexity Low_complexity 2 150 0 7 908 411 40 0 0 chr4 42397096 42397146 -113232974 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 7 908 251 350 55 99 chr4 42397146 42397168 -113232952 - B4A SINE B4 -47 245 179 7 908 579 190 71 47 chr4 42397168 42397295 -113232825 - B1_Mur1 SINE Alu -8 141 12 7 908 251 350 55 99 chr4 42397295 42397327 -113232793 - B4A SINE B4 -47 178 73 7 908 248 319 10 60 chr4 42397341 42397441 -113232679 - B3 SINE B2 -95 121 27 7 908 367 258 53 11 chr4 42397444 42397538 -113232582 + MTEa LTR MaLR 3 100 -279 7 908 252 0 0 0 chr4 42397602 42397630 -113232490 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 908 537 30 0 0 chr4 42397630 42397696 -113232424 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 908 295 298 0 45 chr4 42397696 42397784 -113232336 - RSINE1 SINE B4 0 165 82 7 908 406 336 7 87 chr4 42397802 42397952 -113232168 - B4 SINE B4 -153 139 2 7 908 1077 310 59 34 chr4 42398033 42398441 -113231679 + MT2A LTR ERVL 108 525 -8 7 908 382 302 28 35 chr4 42398532 42398676 -113231444 + MER5A DNA MER1_type 21 163 -26 7 908 684 222 22 0 chr4 42401389 42401524 -113228596 + B1_Mur1 SINE Alu 7 144 -5 7 908 2280 128 14 77 chr4 42402467 42402922 -113227198 + IAPLTR2a LTR ERVK 1 411 0 7 908 3423 81 17 14 chr4 42402922 42403648 -113226472 + IAPEz-int LTR ERVK 8 662 -5819 7 908 901 59 0 8 chr4 42403648 42403768 -113226352 + IAPEz-int LTR ERVK 1359 1477 -5004 7 908 1808 89 0 0 chr4 42403769 42404015 -113226105 + IAPEz-int LTR ERVK 2252 2497 -5183 7 908 903 80 24 0 chr4 42404010 42404135 -113225985 + IAPEz-int LTR ERVK 4783 4910 -2770 7 908 25012 21 7 2 chr4 42404135 42407079 -113223041 + IAPEz-int LTR ERVK 3525 6481 0 7 908 2277 123 9 63 chr4 42407079 42407522 -113222598 + IAPLTR2a LTR ERVK 1 405 -6 7 908 763 268 60 16 chr4 42407525 42407775 -113222345 - Lx8 LINE L1 -77 7396 7136 7 908 213 159 0 0 chr4 42407910 42407954 -113222166 + T-rich Low_complexity Low_complexity 1 44 0 7 908 872 73 97 0 chr4 42407956 42408080 -113222040 - B1_Mus1 SINE Alu 0 148 13 7 908 639 104 8 17 chr4 42409474 42409591 -113220529 + (TC)n Simple_repeat Simple_repeat 1 116 0 7 908 293 349 118 33 chr4 42409640 42409910 -113220210 + L2 LINE L2 1911 2203 -1216 7 908 228 279 16 0 chr4 42410123 42410184 -113219936 + LTR73 LTR ERV1 23 84 -488 7 908 594 184 0 0 chr4 42410254 42410379 -113219741 + (TG)n Simple_repeat Simple_repeat 1 125 0 7 908 310 154 0 19 chr4 42410379 42410432 -113219688 - HAL1-3A_ME LINE L1 -831 2027 1976 7 908 333 68 0 0 chr4 42410434 42410478 -113219642 + (TATG)n Simple_repeat Simple_repeat 2 45 0 7 908 839 193 25 6 chr4 42411307 42411484 -113218636 + B3 SINE B2 1 190 -3 7 908 1078 95 0 26 chr4 42411701 42411852 -113218268 + B1_Mus2 SINE Alu 1 147 0 7 908 644 229 7 27 chr4 42411881 42412012 -113218108 + B1_Mm SINE Alu 3 133 -14 7 908 432 0 0 0 chr4 42412012 42412060 -113218060 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 908 644 229 7 27 chr4 42412060 42412076 -113218044 + B1_Mm SINE Alu 134 146 -1 7 908 984 199 78 0 chr4 42412251 42412442 -113217678 + B3 SINE B2 1 206 -10 7 908 268 242 58 39 chr4 42412463 42412566 -113217554 + MER65-int LTR ERV1 1913 2017 -2854 7 908 1293 28 0 0 chr4 42412821 42412966 -113217154 + B1_Mus2 SINE Alu 2 146 -1 7 908 924 256 5 42 chr4 42413204 42413420 -113216700 - B3 SINE B2 -7 209 2 7 908 397 284 104 59 chr4 42413840 42414128 -113215992 - L2 LINE L2 -736 2683 2383 7 908 703 224 28 0 chr4 42414635 42414778 -113215342 - B1_Mur1 SINE Alu -1 148 2 7 908 307 212 8 117 chr4 42423784 42423912 -113206208 - Lx5 LINE L1 -14 7044 6906 7 908 295 294 58 93 chr4 42423938 42424077 -113206043 - MTE2b LTR MaLR -4 375 242 7 908 236 349 26 35 chr4 42424068 42424181 -113205939 + MTE-int LTR MaLR 994 1105 -475 7 908 373 352 80 25 chr4 42425486 42425725 -113204395 - MT2A LTR ERVL -72 461 210 7 908 442 338 0 7 chr4 42425748 42425888 -113204232 - MTE2b LTR MaLR -214 165 27 7 908 279 0 0 0 chr4 42426053 42426084 -113204036 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 908 713 291 0 0 chr4 42426112 42426260 -113203860 - B3A SINE B2 -39 159 12 7 908 948 260 45 5 chr4 42426258 42426478 -113203642 - B4A SINE B4 -63 229 1 7 908 1160 298 231 7 chr4 42426484 42427197 -113202923 + L2a LINE L2 2208 3080 -339 7 908 468 150 0 0 chr4 42427211 42427291 -113202829 + (TC)n Simple_repeat Simple_repeat 2 81 0 7 908 403 211 49 69 chr4 42427402 42427504 -113202616 - PB1D9 SINE Alu -19 101 2 7 908 947 235 0 11 chr4 42427535 42427724 -113202396 - B3A SINE B2 -5 193 7 7 908 542 286 90 10 chr4 42427727 42427928 -113202192 + L2a LINE L2 3203 3419 -7 7 908 319 339 89 12 chr4 42428174 42428422 -113201698 - ERVL-E-int LTR ERVL -1879 3788 3522 7 908 234 137 58 19 chr4 42428647 42428727 -113201393 + (GTTTG)n Simple_repeat Simple_repeat 1 83 0 7 908 387 0 0 0 chr4 42428751 42428794 -113201326 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 908 709 229 0 0 chr4 42428797 42428941 -113201179 - B3A SINE B2 -54 144 1 7 908 442 321 14 14 chr4 42429794 42429933 -113200187 + MER21B LTR ERV1 551 689 -174 7 908 1236 61 0 0 chr4 42430640 42430788 -113199332 + B1_Mus1 SINE Alu 1 148 0 7 908 204 125 0 0 chr4 42430794 42430826 -113199294 + (A)n Simple_repeat Simple_repeat 1 32 0 7 908 527 66 0 13 chr4 42431082 42431159 -113198961 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 908 716 244 199 44 chr4 42431592 42431680 -113198440 - MER21B LTR ERV1 -308 555 462 7 908 2284 147 43 8 chr4 42431680 42432050 -113198070 - ORR1C2 LTR MaLR -1 383 1 7 908 716 244 199 44 chr4 42432050 42432257 -113197863 - MER21B LTR ERV1 -402 461 214 7 908 495 78 0 0 chr4 42432401 42432478 -113197642 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 908 506 214 167 0 chr4 42432478 42432604 -113197516 - B3A SINE B2 -51 147 1 7 908 501 146 0 0 chr4 42432657 42432739 -113197381 + B1_Mur2 SINE Alu 68 149 0 7 908 189 0 0 0 chr4 42433131 42433152 -113196968 + (TTA)n Simple_repeat Simple_repeat 2 22 0 7 908 1162 42 7 40 chr4 42433166 42433316 -113196804 - B1_Mm SINE Alu 0 147 3 7 908 1917 116 92 0 chr4 42433413 42433705 -113196415 - ORR1A2 LTR MaLR -8 319 1 7 908 438 294 0 106 chr4 42433705 42433838 -113196282 + RSINE1 SINE B4 47 164 -1 7 908 950 268 22 40 chr4 42433921 42434197 -113195923 + B4A SINE B4 3 273 -19 7 908 305 47 23 0 chr4 42435818 42435861 -113194259 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 7 908 472 192 18 54 chr4 42435861 42435986 -113194134 - PB1 SINE Alu -1 126 11 7 908 268 361 72 63 chr4 42436019 42436226 -113193894 + MamRep38 DNA hAT 82 290 -5 7 908 333 336 157 43 chr4 42437527 42437702 -113192418 + L2c LINE L2 3047 3240 -147 7 908 264 100 0 0 chr4 42437702 42437742 -113192378 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 908 333 336 157 43 chr4 42437742 42437871 -113192249 + L2c LINE L2 3241 3386 -1 7 908 371 259 119 11 chr4 42440542 42440699 -113189421 - MIR SINE MIR -96 166 1 7 908 420 346 25 0 chr4 42440803 42440965 -113189155 - MIRb SINE MIR -57 211 46 7 908 189 74 0 0 chr4 42441683 42441710 -113188410 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 7 908 437 395 82 26 chr4 42442602 42442797 -113187323 + MER115 DNA Tip100 190 395 -298 7 908 1005 41 0 0 chr4 42442922 42443045 -113187075 + B1_Mus2 SINE Alu 25 147 0 7 908 406 211 57 86 chr4 42442923 42443063 -113187057 + B4A SINE B4 111 246 -46 7 908 578 230 0 13 chr4 42443065 42443219 -113186901 + GA-rich Low_complexity Low_complexity 3 154 0 7 908 459 152 0 0 chr4 42443513 42443592 -113186528 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 7 908 439 418 36 62 chr4 42443626 42443932 -113186188 - MLT1N2 LTR MaLR -249 313 16 7 908 515 248 8 17 chr4 42444119 42444238 -113185882 - MLT1A LTR MaLR -31 343 226 7 908 375 41 0 0 chr4 42444247 42444296 -113185824 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 908 506 224 19 0 chr4 42444377 42444484 -113185636 - ID_B1 SINE B4 0 224 116 8 908 1430 40 0 6 chr4 42444519 42444694 -113185426 + B2_Mm2 SINE B2 2 175 -20 8 908 432 298 32 26 chr4 42445090 42445116 -113185004 + ID_B1 SINE B4 68 223 -1 8 908 579 209 47 0 chr4 42445116 42445245 -113184875 + B1F SINE Alu 14 148 -1 8 908 1010 144 37 37 chr4 42445263 42445451 -113184669 + B2_Mm2 SINE B2 2 189 -6 8 908 210 321 8 125 chr4 42445672 42445800 -113184320 + B1F1 SINE Alu 1 113 -36 8 908 484 121 0 21 chr4 42445917 42446010 -113184110 + (TA)n Simple_repeat Simple_repeat 1 91 0 8 908 1103 65 14 0 chr4 42446224 42446362 -113183758 + B1_Mus1 SINE Alu 1 140 -8 8 908 1043 211 25 5 chr4 42446523 42446723 -113183397 + B3 SINE B2 11 214 -2 8 908 357 286 0 67 chr4 42446791 42446896 -113183224 - ID_B1 SINE B4 -2 222 125 8 908 454 259 61 26 chr4 42446918 42447033 -113183087 - ID_B1 SINE B4 -77 147 29 8 908 750 179 8 0 chr4 42447136 42447259 -113182861 + B3A SINE B2 2 125 -73 8 908 186 103 0 0 chr4 42447273 42447302 -113182818 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 908 1095 223 36 0 chr4 42447972 42448219 -113181901 + Lx6 LINE L1 7179 7434 -26 8 908 525 241 130 54 chr4 42448580 42448764 -113181356 - B3A SINE B2 0 198 1 8 908 1614 225 98 77 chr4 42448779 42449327 -113180793 - Lx8 LINE L1 0 7473 6914 8 908 236 287 81 73 chr4 42449457 42449581 -113180539 + ID_B1 SINE B4 51 175 -49 8 908 409 237 20 30 chr4 42449497 42449597 -113180523 + PB1D10 SINE Alu 12 110 -7 8 908 723 220 30 0 chr4 42449608 42449740 -113180380 + B1_Mur2 SINE Alu 1 136 -13 8 908 306 0 0 0 chr4 42449741 42449775 -113180345 + (ATG)n Simple_repeat Simple_repeat 2 35 0 8 908 233 234 83 21 chr4 42450047 42450143 -113179977 + MER90a LTR ERV1 1 102 -512 8 908 681 329 120 14 chr4 42450636 42451019 -113179101 + MER70A LTR ERVL 11 472 0 8 908 431 229 122 18 chr4 42451496 42451636 -113178484 - MTE2a LTR MaLR 0 379 223 8 908 669 210 173 6 chr4 42451672 42451840 -113178280 - B3A SINE B2 0 198 3 8 908 1291 63 51 0 chr4 42451926 42452101 -113178019 + B2_Mm2 SINE B2 1 184 -11 8 908 201 320 0 0 chr4 42453170 42453245 -113176875 + G-rich Low_complexity Low_complexity 5 79 0 8 908 203 61 0 29 chr4 42454254 42454288 -113175832 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 908 278 261 106 64 chr4 42454303 42454397 -113175723 - RSINE1 SINE B4 -31 134 37 8 908 2688 58 3 6 chr4 42454574 42454902 -113175218 + ORR1A2 LTR MaLR 1 327 0 8 908 360 0 0 0 chr4 42454998 42455038 -113175082 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 908 432 0 0 0 chr4 42455038 42455085 -113175035 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 908 464 216 167 0 chr4 42455094 42455196 -113174924 - B4A SINE B4 -14 278 160 8 908 291 207 146 0 chr4 42455207 42455289 -113174831 - B4 SINE B4 -193 99 6 8 908 600 272 63 22 chr4 42455606 42455828 -113174292 - L1MA4 LINE L1 -365 5935 5705 8 908 394 306 15 76 chr4 42456021 42456064 -113174056 - RSINE1 SINE B4 -15 150 111 8 908 5732 147 18 8 chr4 42456064 42457013 -113173107 + RMER17B LTR ERVK 1 958 0 8 908 394 306 15 76 chr4 42457013 42457100 -113173020 - RSINE1 SINE B4 -55 110 28 8 908 22 0 0 0 chr4 42457171 42457193 -113172927 + AT_rich Low_complexity Low_complexity 1 22 0 8 908 787 199 0 0 chr4 42457210 42457346 -113172774 - B1_Mur2 SINE Alu 0 149 14 8 908 518 265 26 39 chr4 42457346 42457363 -113172757 - ID_B1 SINE B4 0 224 74 8 908 771 198 23 28 chr4 42457732 42457909 -113172211 + ORR1A1 LTR MaLR 1 176 -170 8 908 231 288 0 0 chr4 42458702 42458768 -113171352 - Lx7 LINE L1 -16 7680 7615 8 908 588 247 49 12 chr4 42458813 42458977 -113171143 + Lx7 LINE L1 6872 7041 -655 8 908 993 135 67 11 chr4 42458985 42459009 -113171111 - B2_Mm2 SINE B2 -4 191 167 8 908 974 148 0 6 chr4 42459009 42459186 -113170934 + T-rich Low_complexity Low_complexity 4 179 0 8 908 993 135 67 11 chr4 42459186 42459341 -113170779 - B2_Mm2 SINE B2 -29 166 3 8 908 2424 75 25 6 chr4 42459695 42460016 -113170104 - ORR1A2 LTR MaLR 0 327 1 8 908 281 250 130 49 chr4 42460110 42460295 -113169825 - L1MC2 LINE L1 -25 6319 6120 8 908 243 0 0 0 chr4 42460851 42460878 -113169242 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 908 240 214 239 33 chr4 42460878 42460970 -113169150 - PB1D10 SINE Alu -2 115 5 8 908 1993 239 102 26 chr4 42461144 42461226 -113168894 - Lx8 LINE L1 -7 7466 7382 8 908 2283 90 71 20 chr4 42461226 42461576 -113168544 - RLTR9A LTR ERVK 0 368 1 8 908 1993 239 102 26 chr4 42461576 42462143 -113167977 - Lx8 LINE L1 -92 7381 6768 8 908 1068 213 95 109 chr4 42462145 42462178 -113167942 - ORR1E LTR MaLR -2 357 325 8 908 861 62 0 0 chr4 42462178 42462290 -113167830 + (GGA)n Simple_repeat Simple_repeat 3 114 0 8 908 1068 213 95 109 chr4 42462290 42462594 -113167526 - ORR1E LTR MaLR -35 324 27 8 908 616 189 32 8 chr4 42462685 42462808 -113167312 - B3 SINE B2 -6 210 85 8 908 591 171 105 0 chr4 42462811 42462916 -113167204 - PB1D10 SINE Alu -1 116 1 8 908 1587 254 102 25 chr4 42463029 42463550 -113166570 + Lx8 LINE L1 6669 7229 -244 8 908 3362 223 67 75 chr4 42463571 42464645 -113165475 + RMER1B Other Other 2 1066 0 8 908 475 241 28 0 chr4 42464744 42464853 -113165267 + B4 SINE B4 84 198 -94 8 908 1058 117 12 0 chr4 42464954 42465117 -113165003 + RMER1B Other Other 593 757 -309 8 908 250 268 0 0 chr4 42465118 42465174 -113164946 - RSINE1 SINE B4 -108 57 2 8 908 293 318 36 18 chr4 42465245 42465357 -113164763 - MLT1A1 LTR MaLR -294 114 1 8 908 361 208 75 56 chr4 42465445 42465552 -113164568 - RMER1B Other Other -463 603 495 8 908 419 234 0 0 chr4 42465552 42465629 -113164491 + RSINE1 SINE B4 55 131 -34 8 908 244 321 84 24 chr4 42465878 42465961 -113164159 + MTE2a LTR MaLR 280 367 -12 8 908 315 0 0 0 chr4 42466318 42466353 -113163767 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 113 365 213 0 39 chr4 42467270 42467348 -113162772 + RLTR11A2 LTR ERVK 1 75 -452 8 909 2818 218 35 44 chr4 42467352 42468123 -113161997 + MYSERV6-int LTR ERVK 8018 8781 -178 8 909 596 249 53 21 chr4 42468223 42468412 -113161708 + MYSERV-int LTR ERVK 6354 6548 -2 8 909 985 263 158 64 chr4 42468434 42468840 -113161280 + RLTR11A2 LTR ERVK 19 462 -65 8 909 1375 77 11 0 chr4 42469027 42469209 -113160911 + B2_Mm1t SINE B2 2 185 -8 8 909 3252 16 0 11 chr4 42475435 42475806 -113154314 - IAPLTR1_Mm LTR ERVK 0 367 1 8 909 8966 31 2 5 chr4 42475806 42476891 -113153229 - IAPEz-int LTR ERVK 0 6481 5400 8 909 20561 32 50 0 chr4 42476869 42479404 -113150716 - IAPEz-int LTR ERVK -3811 2670 8 8 909 3278 14 0 11 chr4 42479404 42479775 -113150345 - IAPLTR1_Mm LTR ERVK 0 367 1 8 909 618 229 25 0 chr4 42482435 42482557 -113147563 - B1_Mur1 SINE Alu -18 131 7 8 909 246 116 0 0 chr4 42483668 42483711 -113146409 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 8 909 500 127 38 0 chr4 42483920 42483999 -113146121 + MTD LTR MaLR 1 82 -337 8 909 824 236 55 6 chr4 42483996 42484179 -113145941 + MTD LTR MaLR 226 417 -2 8 909 467 229 111 0 chr4 42484458 42484602 -113145518 - Lx9 LINE L1 -227 7417 7258 8 909 421 177 241 0 chr4 42484600 42484741 -113145379 + Lx9 LINE L1 7449 7623 -21 8 909 236 221 20 131 chr4 42484969 42485068 -113145052 + MLT1A1 LTR MaLR 316 403 -5 8 909 307 292 30 148 chr4 42485100 42485156 -113144964 + L1M5 LINE L1 5024 5077 -1069 8 909 288 270 14 0 chr4 42485156 42485230 -113144890 - ID4 SINE ID -7 76 2 8 909 307 292 30 148 chr4 42485230 42485342 -113144778 + L1M5 LINE L1 5078 5172 -974 8 909 226 185 0 278 chr4 42485350 42485440 -113144680 + ORR1C1 LTR MaLR 1 65 -313 8 909 1673 191 10 10 chr4 42485588 42485900 -113144220 - MTC LTR MaLR 0 421 110 8 909 744 201 14 27 chr4 42486099 42486247 -113143873 - B1_Mus1 SINE Alu -1 147 2 8 909 539 236 17 7 chr4 42486604 42486733 -113143387 - MTC LTR MaLR -299 120 1 8 909 1988 112 79 38 chr4 42486888 42487231 -113142889 - ORR1B2 LTR MaLR -8 359 3 8 909 450 0 0 0 chr4 42487415 42487465 -113142655 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 909 1241 246 22 29 chr4 42487471 42487743 -113142377 - B4 SINE B4 -21 271 2 8 909 1382 129 5 5 chr4 42488208 42488419 -113141701 + MTC LTR MaLR 1 211 -210 8 909 2103 156 50 0 chr4 42488419 42488718 -113141402 + Lx5 LINE L1 6598 6898 -152 8 909 180 0 0 0 chr4 42488718 42488738 -113141382 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 909 2103 136 89 17 chr4 42488738 42488842 -113141278 + Lx5 LINE L1 6899 7053 -5 8 909 1325 90 6 6 chr4 42488863 42489041 -113141079 + B2_Mm1t SINE B2 2 179 -14 8 909 296 35 0 50 chr4 42489108 42489168 -113140952 + B2_Mm2 SINE B2 137 193 -2 8 909 21 0 0 0 chr4 42489169 42489190 -113140930 + AT_rich Low_complexity Low_complexity 1 21 0 8 909 603 0 0 0 chr4 42489214 42489281 -113140839 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 8 909 1218 170 63 0 chr4 42489281 42489487 -113140633 + MTC LTR MaLR 203 421 0 8 909 441 0 0 0 chr4 42489816 42489865 -113140255 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 909 365 206 0 0 chr4 42490650 42490713 -113139407 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 8 909 268 323 43 0 chr4 42490713 42490743 -113139377 + BC1_Mm scRNA scRNA 8 104 -48 8 909 510 242 198 36 chr4 42490811 42491064 -113139056 + L1M4b LINE L1 2986 3279 -4055 8 909 1075 166 82 39 chr4 42491091 42491298 -113138822 + B3 SINE B2 1 216 0 8 909 323 73 0 0 chr4 42491392 42491433 -113138687 - B1_Mus2 SINE Alu -106 41 1 8 909 1280 221 143 28 chr4 42491523 42491694 -113138426 + MTD LTR MaLR 1 194 -225 8 909 1347 84 0 0 chr4 42491694 42492031 -113138089 + (CA)n Simple_repeat Simple_repeat 1 337 0 8 909 1280 221 143 28 chr4 42492031 42492219 -113137901 + MTD LTR MaLR 195 403 -16 8 909 1286 73 5 5 chr4 42492310 42492531 -113137589 + (TG)n Simple_repeat Simple_repeat 1 221 0 8 909 1026 240 108 4 chr4 42492535 42492786 -113137334 - B4A SINE B4 -14 278 2 8 909 285 263 43 65 chr4 42492907 42492992 -113137128 + ID_B1 SINE B4 9 136 -88 8 909 372 152 0 33 chr4 42492992 42493053 -113137067 + B1_Mur4 SINE Alu 2 60 -90 8 909 285 263 43 65 chr4 42493053 42493065 -113137055 + ID_B1 SINE B4 137 157 -67 8 909 507 278 21 24 chr4 42493069 42493283 -113136837 + G-rich Low_complexity Low_complexity 1 213 0 9 909 896 157 34 34 chr4 42493230 42493463 -113136657 + (CAGAGA)n Simple_repeat Simple_repeat 1 233 0 9 909 198 36 32 113 chr4 42493463 42493648 -113136472 + GA-rich Low_complexity Low_complexity 3 172 0 9 909 657 124 29 0 chr4 42493650 42493755 -113136365 + B1_Mus2 SINE Alu 40 147 0 9 909 549 0 0 0 chr4 42493757 42493818 -113136302 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 909 214 216 19 19 chr4 42494722 42494774 -113135346 + GA-rich Low_complexity Low_complexity 2 53 0 9 909 238 148 18 18 chr4 42495483 42495538 -113134582 + C-rich Low_complexity Low_complexity 5 59 0 9 909 345 47 0 0 chr4 42495540 42495583 -113134537 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 9 909 2380 58 0 0 chr4 42495588 42495882 -113134238 - L1Md_F2 LINE L1 -11 6571 6278 9 909 442 259 86 0 chr4 42495887 42496003 -113134117 - B1_Mur1 SINE Alu 0 149 24 9 909 1171 69 0 7 chr4 42496055 42496201 -113133919 - B1_Mus2 SINE Alu 0 147 3 9 909 2254 126 12 3 chr4 42496574 42496917 -113133203 - ORR1A1 LTR MaLR 0 346 1 9 909 574 245 26 39 chr4 42497286 42497303 -113132817 + ID_B1 SINE B4 74 224 0 9 909 837 176 0 0 chr4 42497303 42497439 -113132681 + B1_Mur2 SINE Alu 14 149 0 9 909 450 313 7 64 chr4 42497519 42497615 -113132505 + RSINE1 SINE B4 19 108 -57 9 909 5494 143 43 5 chr4 42497615 42498538 -113131582 - RMER17B LTR ERVK 0 958 1 9 909 450 313 7 64 chr4 42498538 42498581 -113131539 + RSINE1 SINE B4 109 150 -15 9 909 600 272 63 22 chr4 42498774 42498996 -113131124 + L1MA4 LINE L1 5705 5935 -365 9 909 291 207 146 0 chr4 42499313 42499395 -113130725 + B4 SINE B4 6 99 -193 9 909 464 216 167 0 chr4 42499406 42499508 -113130612 + B4A SINE B4 160 278 -14 9 909 324 0 0 0 chr4 42499517 42499553 -113130567 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 909 429 20 0 0 chr4 42499553 42499602 -113130518 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 909 2359 60 3 7 chr4 42499700 42500000 -113130120 - ORR1A2 LTR MaLR 0 327 29 9 909 719 261 57 0 chr4 42500730 42500887 -113129233 + B3 SINE B2 1 166 -50 1 909 447 196 118 5 chr4 42500892 42500998 -113129122 - B1_Mur3 SINE Alu -30 119 7 2 909 1208 124 11 0 chr4 42501362 42501539 -113128581 + B2_Mm1t SINE B2 1 179 -14 3 909 340 142 0 39 chr4 42501605 42501672 -113128448 + B2_Mm2 SINE B2 47 109 -107 4 909 201 39 0 0 chr4 42501687 42501713 -113128407 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 909 839 240 51 101 chr4 42502150 42502206 -113127914 - ORR1E LTR MaLR 0 359 304 6 909 875 132 13 53 chr4 42502206 42502358 -113127762 + B1_Mus2 SINE Alu 1 146 -1 7 909 839 240 51 101 chr4 42502358 42502676 -113127444 - ORR1E LTR MaLR -56 303 4 6 909 780 172 31 0 chr4 42502839 42503002 -113127118 - Lx5 LINE L1 -3 7047 6880 8 909 1227 180 9 9 chr4 42503044 42503257 -113126863 - B3 SINE B2 -3 213 1 9 909 303 71 0 0 chr4 42503474 42503516 -113126604 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 909 1023 75 0 0 chr4 42503518 42503664 -113126456 + (TCC)n Simple_repeat Simple_repeat 2 147 0 1 909 840 144 53 0 chr4 42503664 42503796 -113126324 - B1_Mm SINE Alu -8 139 1 1 909 270 351 88 22 chr4 42504274 42504411 -113125709 + L1MD2 LINE L1 181 326 -6221 1 909 1150 307 78 9 chr4 42504447 42505013 -113125107 + L1MD2 LINE L1 505 1126 -5514 1 909 852 164 29 0 chr4 42505130 42505270 -113124850 + B1_Mur2 SINE Alu 1 144 -5 1 909 818 288 44 13 chr4 42505282 42505685 -113124435 + L1MD2 LINE L1 1639 2085 -4555 1 909 625 273 198 19 chr4 42505764 42506066 -113124054 - MTEa LTR MaLR -21 338 1 1 909 323 269 13 0 chr4 42506082 42506160 -113123960 - ID4 SINE ID -3 80 2 1 909 282 310 154 18 chr4 42506260 42506546 -113123574 + L1MD2 LINE L1 5079 5403 -1141 1 909 342 226 163 44 chr4 42506611 42506838 -113123282 + L1MD2 LINE L1 5368 5621 -923 1 909 403 331 57 57 chr4 42506839 42507031 -113123089 + B3A SINE B2 6 197 -1 1 909 2510 113 170 3 chr4 42507134 42507516 -113122604 - RLTR41 LTR ERV1 0 446 1 1 909 548 308 22 22 chr4 42507615 42507853 -113122267 - RLTR6-int LTR ERV1 -90 7688 7476 1 909 2098 263 12 4 chr4 42508632 42509121 -113120999 - MuRRS4-int LTR ERV1 -1038 4025 3533 2 909 531 372 3 3 chr4 42509516 42509799 -113120321 - MuLV-int LTR ERV1 -3333 4273 3991 2 909 374 350 104 60 chr4 42509855 42510441 -113119679 - MuLV-int LTR ERV1 -5191 2415 1804 2 909 13814 76 27 12 chr4 42510619 42512856 -113117264 - L1VL2 LINE L1 -628 2987 716 2 909 297 186 0 28 chr4 42512946 42513018 -113117102 + L1M LINE L1 5338 5407 -772 2 909 936 182 5 43 chr4 42513171 42513355 -113116765 + B3 SINE B2 20 196 -20 2 909 1242 111 33 0 chr4 42513478 42513659 -113116461 + B2_Mm2 SINE B2 1 187 -8 2 909 3272 53 179 2 chr4 42514046 42514481 -113115639 + RLTR1B LTR ERV1 1 512 0 2 909 344 231 25 13 chr4 42514584 42514663 -113115457 + PB1 SINE Alu 41 120 -7 2 909 4524 109 32 18 chr4 42514829 42515547 -113114573 - RMER6A LTR ERVK -28 728 1 2 909 1356 212 202 9 chr4 42515751 42516330 -113113790 + RMER1B Other Other 86 704 -362 2 909 200 91 22 43 chr4 42516340 42516386 -113113734 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3 909 613 173 65 13 chr4 42516408 42516567 -113113553 + RMER1B Other Other 850 1066 0 2 909 275 391 8 0 chr4 42516587 42516715 -113113405 - MLT1A0 LTR MaLR -120 245 117 3 909 231 36 0 0 chr4 42517391 42517419 -113112701 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 909 218 89 44 0 chr4 42517513 42517558 -113112562 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 909 224 194 0 0 chr4 42517679 42517715 -113112405 + polypyrimidine Low_complexity Low_complexity 2 37 0 3 909 482 323 61 9 chr4 42518187 42518415 -113111705 - L1M5 LINE L1 -429 5750 5511 3 909 776 65 0 9 chr4 42518435 42518543 -113111577 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 3 909 1113 188 14 24 chr4 42518563 42518775 -113111345 - B3 SINE B2 -1 215 6 3 909 383 238 81 8 chr4 42518775 42518898 -113111222 - L1M5 LINE L1 -690 5489 5358 3 909 669 245 72 7 chr4 42518966 42519118 -113111002 - RSINE1 SINE B4 -1 164 3 3 909 657 256 66 10 chr4 42519118 42519311 -113110809 - B4A SINE B4 -62 230 27 3 909 326 292 58 6 chr4 42519342 42519514 -113110606 - L1M5 LINE L1 -872 5274 5094 4 909 615 297 104 43 chr4 42519590 42520203 -113109917 - L1M5 LINE L1 -3338 2808 2156 4 909 402 280 103 14 chr4 42520203 42520348 -113109772 + Tigger7 DNA MER2_type 2308 2465 -26 4 909 735 333 73 17 chr4 42520450 42520752 -113109368 + MLT2F LTR ERVL 261 579 -84 4 909 738 211 0 0 chr4 42520777 42520957 -113109163 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 909 198 224 0 0 chr4 42520965 42521014 -113109106 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 4 909 316 301 94 31 chr4 42521038 42521165 -113108955 + ORR1E LTR MaLR 4 138 -221 4 909 298 241 34 22 chr4 42521267 42521356 -113108764 + ORR1E LTR MaLR 280 369 -1 4 909 535 261 32 53 chr4 42521357 42521547 -113108573 + ORR1E-int LTR MaLR 1 186 -1394 4 909 369 0 0 0 chr4 42521750 42521791 -113108329 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 909 263 195 188 35 chr4 42522000 42522085 -113108035 + RMER10A LTR ERVL 318 415 -27 4 909 875 307 92 66 chr4 42522107 42522637 -113107483 + ORR1E-int LTR MaLR 169 712 -868 4 909 768 246 78 29 chr4 42522694 42522899 -113107221 + B3 SINE B2 1 215 -1 4 909 295 330 43 9 chr4 42523176 42523292 -113106828 - ORR1E LTR MaLR -239 120 1 4 909 448 273 24 78 chr4 42523866 42524033 -113106087 + RSINE1 SINE B4 5 162 -3 5 909 25 0 0 0 chr4 42524057 42524082 -113106038 + AT_rich Low_complexity Low_complexity 1 25 0 5 909 24 67 0 0 chr4 42524219 42524264 -113105856 + AT_rich Low_complexity Low_complexity 1 45 0 5 909 839 238 48 5 chr4 42524267 42524453 -113105667 - B3A SINE B2 -4 194 1 5 909 246 315 0 14 chr4 42525702 42525776 -113104344 + CT-rich Low_complexity Low_complexity 3 75 0 5 909 1406 236 83 41 chr4 42525780 42526143 -113103977 - MTD LTR MaLR -4 415 38 5 909 349 240 13 0 chr4 42526151 42526226 -113103894 - PB1D10 SINE Alu -37 80 5 5 909 372 22 0 0 chr4 42526742 42526787 -113103333 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 5 909 780 204 46 82 chr4 42526819 42527109 -113103011 - B4A SINE B4 0 292 7 5 909 3656 58 6 29 chr4 42527955 42528434 -113101686 + L1_Mus2 LINE L1 6098 6565 -1 5 909 269 51 26 0 chr4 42528439 42528478 -113101642 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 6 909 689 317 95 45 chr4 42528585 42528828 -113101292 - ORR1E LTR MaLR 0 359 93 6 909 1447 105 17 48 chr4 42528828 42529058 -113101062 + URR1B DNA MER1_type 3 225 0 6 909 689 317 95 45 chr4 42529058 42529151 -113100969 - ORR1E LTR MaLR -267 92 6 6 909 183 400 0 0 chr4 42529561 42529626 -113100494 + L2 LINE L2 1601 1665 -1754 6 909 231 301 33 66 chr4 42529641 42529723 -113100397 - ORR1D1 LTR MaLR -13 361 281 6 909 493 249 151 98 chr4 42529723 42529928 -113100192 - B3 SINE B2 0 216 1 6 909 231 301 33 66 chr4 42529928 42529966 -113100154 - ORR1D1 LTR MaLR -94 280 245 6 909 1675 159 107 9 chr4 42530144 42530462 -113099658 - ORR1B1 LTR MaLR -5 389 41 6 909 25 31 0 0 chr4 42530602 42530634 -113099486 + AT_rich Low_complexity Low_complexity 1 32 0 6 909 414 0 0 0 chr4 42530676 42530722 -113099398 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 909 1922 117 149 20 chr4 42530722 42531070 -113099050 + ORR1B1 LTR MaLR 2 394 0 6 909 324 0 0 0 chr4 42531267 42531303 -113098817 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 909 2241 140 6 0 chr4 42531631 42531973 -113098147 + RLTR14 LTR ERV1 4 347 -35 7 909 3163 41 8 13 chr4 42532141 42532534 -113097586 + L1Md_F2 LINE L1 6192 6582 0 7 909 326 294 100 95 chr4 42532617 42533016 -113097104 - RMER10A LTR ERVL -25 417 17 7 909 2395 147 32 7 chr4 42533285 42533695 -113096425 + MTC LTR MaLR 1 400 -21 7 909 21 0 0 0 chr4 42533713 42533734 -113096386 + AT_rich Low_complexity Low_complexity 1 21 0 7 909 364 270 14 0 chr4 42534218 42534292 -113095828 + B3 SINE B2 110 184 -32 7 909 752 188 0 30 chr4 42534792 42534924 -113095196 + B2_Mm2 SINE B2 2 129 -66 7 909 22 0 0 0 chr4 42534932 42534954 -113095166 + AT_rich Low_complexity Low_complexity 1 22 0 7 909 1229 54 7 0 chr4 42535002 42535149 -113094971 + B1_Mus1 SINE Alu 1 148 0 7 909 414 0 0 0 chr4 42535177 42535223 -113094897 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 909 1369 77 11 0 chr4 42543056 42543238 -113086882 - B2_Mm1t SINE B2 -8 185 2 8 909 987 263 158 64 chr4 42543425 42543831 -113086289 - RLTR11A2 LTR ERVK -65 462 19 8 909 629 243 53 21 chr4 42543853 42544042 -113086078 - MYSERV-int LTR ERVK -2 6548 6354 8 909 4530 12 0 0 chr4 42544052 42544545 -113085575 + MT2_Mm LTR ERVL 1 493 0 8 909 48899 15 1 0 chr4 42544545 42549903 -113080217 + MERVL-int LTR ERVL 1 5365 -120 8 909 391 141 24 49 chr4 42549903 42549985 -113080135 + ORR1A3-int LTR MaLR 561 640 -1323 8 909 319 0 0 0 chr4 42549985 42550023 -113080097 + MERVL-int LTR ERVL 5448 5485 0 8 909 4505 14 0 0 chr4 42550023 42550516 -113079604 + MT2_Mm LTR ERVL 1 493 0 8 909 2970 219 35 47 chr4 42550611 42551384 -113078736 - MYSERV6-int LTR ERVK -178 8781 8018 8 909 360 213 0 39 chr4 42551388 42551466 -113078654 - RLTR11A2 LTR ERVK -452 75 1 8 909 232 321 84 24 chr4 42552759 42552842 -113077278 - MTE2a LTR MaLR -12 367 280 8 909 415 234 0 0 chr4 42553091 42553168 -113076952 - RSINE1 SINE B4 -34 131 55 8 909 405 208 75 56 chr4 42553168 42553275 -113076845 + RMER1B Other Other 495 603 -463 8 909 290 318 36 18 chr4 42553363 42553475 -113076645 + MLT1A1 LTR MaLR 1 114 -294 9 909 246 268 0 0 chr4 42553546 42553602 -113076518 + RSINE1 SINE B4 2 57 -108 9 909 1125 117 12 0 chr4 42553603 42553766 -113076354 - RMER1B Other Other -309 757 593 9 909 467 233 22 0 chr4 42553886 42553976 -113076144 - B4 SINE B4 -117 175 84 9 909 3706 223 67 75 chr4 42554075 42555149 -113074971 - RMER1B Other Other 0 1066 2 9 909 1725 253 108 24 chr4 42555156 42555691 -113074429 - Lx8 LINE L1 -225 7248 6669 9 909 577 171 105 0 chr4 42555804 42555909 -113074211 + PB1D10 SINE Alu 1 116 -1 9 909 615 189 32 8 chr4 42555912 42556035 -113074085 + B3 SINE B2 85 210 -6 9 909 1068 213 95 109 chr4 42556126 42556430 -113073690 + ORR1E LTR MaLR 25 312 -47 9 909 861 62 0 0 chr4 42556430 42556542 -113073578 + (TCC)n Simple_repeat Simple_repeat 3 114 0 9 909 1068 213 95 109 chr4 42556542 42556575 -113073545 + ORR1E LTR MaLR 313 356 -3 9 909 1993 239 102 26 chr4 42556577 42557144 -113072976 + Lx8 LINE L1 6768 7381 -92 1 909 2283 90 71 20 chr4 42557144 42557494 -113072626 + RLTR9A LTR ERVK 1 368 0 1 909 1993 239 102 26 chr4 42557494 42557576 -113072544 + Lx8 LINE L1 7382 7466 -7 1 909 240 214 239 33 chr4 42557750 42557842 -113072278 + PB1D10 SINE Alu 5 115 -2 1 909 243 0 0 0 chr4 42557842 42557869 -113072251 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 909 281 250 130 49 chr4 42558425 42558610 -113071510 + L1MC2 LINE L1 6120 6319 -25 1 909 2424 75 25 6 chr4 42558704 42559025 -113071095 + ORR1A2 LTR MaLR 1 327 0 1 909 993 135 67 11 chr4 42559379 42559534 -113070586 + B2_Mm2 SINE B2 2 165 -30 1 909 974 148 0 6 chr4 42559534 42559711 -113070409 + A-rich Low_complexity Low_complexity 4 179 0 1 909 993 135 67 11 chr4 42559711 42559735 -113070385 + B2_Mm2 SINE B2 166 190 -5 1 909 588 247 49 12 chr4 42559743 42559907 -113070213 - Lx7 LINE L1 -655 7041 6872 1 909 231 288 0 0 chr4 42559952 42560018 -113070102 + Lx7 LINE L1 7615 7680 -16 1 909 771 198 23 28 chr4 42560811 42560988 -113069132 - ORR1A1 LTR MaLR -170 176 1 1 909 518 265 26 39 chr4 42561357 42561374 -113068746 + ID_B1 SINE B4 74 224 0 1 909 787 199 0 0 chr4 42561374 42561510 -113068610 + B1_Mur2 SINE Alu 14 149 0 1 909 22 0 0 0 chr4 42561527 42561549 -113068571 + AT_rich Low_complexity Low_complexity 1 22 0 1 909 394 306 15 76 chr4 42561620 42561707 -113068413 + RSINE1 SINE B4 28 110 -55 1 909 5732 147 18 8 chr4 42561707 42562656 -113067464 - RMER17B LTR ERVK 0 958 1 1 909 394 306 15 76 chr4 42562656 42562699 -113067421 + RSINE1 SINE B4 111 150 -15 1 909 600 272 63 22 chr4 42562892 42563114 -113067006 + L1MA4 LINE L1 5705 5935 -365 1 909 291 207 146 0 chr4 42563431 42563513 -113066607 + B4 SINE B4 6 99 -193 1 909 464 216 167 0 chr4 42563524 42563626 -113066494 + B4A SINE B4 160 278 -14 1 909 432 0 0 0 chr4 42563635 42563683 -113066437 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 909 360 0 0 0 chr4 42563683 42563722 -113066398 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 909 2688 58 3 6 chr4 42563818 42564146 -113065974 - ORR1A2 LTR MaLR 0 327 1 1 909 278 261 106 64 chr4 42564323 42564417 -113065703 + RSINE1 SINE B4 37 134 -31 1 909 203 61 0 29 chr4 42564432 42564466 -113065654 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 909 201 320 0 0 chr4 42565475 42565550 -113064570 + C-rich Low_complexity Low_complexity 5 79 0 1 909 1291 63 51 0 chr4 42566619 42566794 -113063326 - B2_Mm2 SINE B2 -11 184 1 1 909 669 210 173 6 chr4 42566880 42567048 -113063072 + B3A SINE B2 3 198 0 1 909 431 229 122 18 chr4 42567084 42567224 -113062896 + MTE2a LTR MaLR 223 379 0 1 909 681 329 120 14 chr4 42567701 42568084 -113062036 - MER70A LTR ERVL 0 472 11 1 909 233 234 83 21 chr4 42568577 42568673 -113061447 - MER90a LTR ERV1 -512 102 1 1 909 306 0 0 0 chr4 42568945 42568979 -113061141 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1 909 723 220 30 0 chr4 42568980 42569112 -113061008 - B1_Mur2 SINE Alu -13 136 1 1 909 409 237 20 30 chr4 42569123 42569223 -113060897 - PB1D10 SINE Alu -7 110 12 1 909 236 287 81 73 chr4 42569139 42569263 -113060857 - ID_B1 SINE B4 -49 175 51 1 909 1614 225 98 77 chr4 42569393 42569941 -113060179 + Lx8 LINE L1 6914 7473 0 1 909 525 241 130 54 chr4 42569956 42570140 -113059980 + B3A SINE B2 1 198 0 1 909 1095 223 36 0 chr4 42570501 42570748 -113059372 - Lx6 LINE L1 -26 7434 7179 1 909 186 103 0 0 chr4 42571418 42571447 -113058673 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 909 750 179 8 0 chr4 42571461 42571584 -113058536 - B3A SINE B2 -73 125 2 1 909 454 259 61 26 chr4 42571687 42571802 -113058318 + ID_B1 SINE B4 29 147 -77 1 909 357 286 0 67 chr4 42571824 42571929 -113058191 + ID_B1 SINE B4 125 222 -2 1 909 1043 211 25 5 chr4 42571997 42572197 -113057923 - B3 SINE B2 -2 214 11 1 909 1103 65 14 0 chr4 42572358 42572496 -113057624 - B1_Mus1 SINE Alu -8 140 1 1 909 502 118 0 21 chr4 42572710 42572805 -113057315 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 909 210 321 8 125 chr4 42572922 42573050 -113057070 - B1F1 SINE Alu -36 113 1 1 909 1010 144 37 37 chr4 42573271 42573459 -113056661 - B2_Mm2 SINE B2 -6 189 2 1 909 579 209 47 0 chr4 42573477 42573606 -113056514 - B1F SINE Alu -1 148 14 1 909 432 298 32 26 chr4 42573606 42573632 -113056488 - ID_B1 SINE B4 -1 223 68 1 909 1430 40 0 6 chr4 42574028 42574203 -113055917 - B2_Mm2 SINE B2 -20 175 2 1 909 506 224 19 0 chr4 42574238 42574345 -113055775 + ID_B1 SINE B4 116 224 0 1 909 375 41 0 0 chr4 42574426 42574475 -113055645 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 909 515 248 8 17 chr4 42574484 42574603 -113055517 + MLT1A LTR MaLR 226 343 -31 1 909 439 418 36 62 chr4 42574790 42575096 -113055024 + MLT1N2 LTR MaLR 16 313 -249 1 909 459 152 0 0 chr4 42575130 42575209 -113054911 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 1 909 638 232 0 12 chr4 42575503 42575673 -113054447 + CT-rich Low_complexity Low_complexity 3 170 0 1 909 1005 41 0 0 chr4 42575679 42575802 -113054318 - B1_Mus2 SINE Alu 0 147 25 1 909 437 395 82 26 chr4 42575927 42576122 -113053998 - MER115 DNA Tip100 -298 395 190 1 909 189 74 0 0 chr4 42577014 42577041 -113053079 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 1 909 420 346 25 0 chr4 42577759 42577921 -113052199 + MIRb SINE MIR 46 211 -57 1 909 371 259 119 11 chr4 42578025 42578182 -113051938 + MIR SINE MIR 1 166 -96 1 909 333 336 157 43 chr4 42580853 42580982 -113049138 - L2c LINE L2 -1 3386 3241 1 909 264 100 0 0 chr4 42580982 42581022 -113049098 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 909 333 336 157 43 chr4 42581022 42581197 -113048923 - L2c LINE L2 -147 3240 3047 1 909 268 361 72 63 chr4 42582498 42582705 -113047415 - MamRep38 DNA hAT -5 290 82 1 909 472 192 18 54 chr4 42582738 42582863 -113047257 + PB1 SINE Alu 11 126 -1 1 909 305 47 23 0 chr4 42582863 42582906 -113047214 + (CAAAC)n Simple_repeat Simple_repeat 5 48 0 1 909 950 268 22 40 chr4 42584527 42584803 -113045317 - B4A SINE B4 -19 273 3 1 909 438 294 0 106 chr4 42584886 42585019 -113045101 - RSINE1 SINE B4 -1 164 47 1 909 1917 116 92 0 chr4 42585019 42585311 -113044809 + ORR1A2 LTR MaLR 1 319 -8 1 909 1162 42 7 40 chr4 42585408 42585558 -113044562 + B1_Mm SINE Alu 3 147 0 1 909 189 0 0 0 chr4 42585572 42585593 -113044527 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 909 501 146 0 0 chr4 42585985 42586067 -113044053 - B1_Mur2 SINE Alu 0 149 68 1 909 506 214 167 0 chr4 42586120 42586246 -113043874 + B3A SINE B2 1 147 -51 1 909 495 78 0 0 chr4 42586246 42586323 -113043797 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 909 716 244 199 44 chr4 42586467 42586674 -113043446 + MER21B LTR ERV1 214 461 -402 1 909 2284 147 43 8 chr4 42586674 42587044 -113043076 + ORR1C2 LTR MaLR 1 383 -1 1 909 716 244 199 44 chr4 42587044 42587132 -113042988 + MER21B LTR ERV1 462 555 -308 1 909 527 66 0 13 chr4 42587565 42587642 -113042478 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 909 204 125 0 0 chr4 42587898 42587930 -113042190 + (T)n Simple_repeat Simple_repeat 1 32 0 1 909 1236 61 0 0 chr4 42587936 42588084 -113042036 - B1_Mus1 SINE Alu 0 148 1 1 909 442 321 14 14 chr4 42588791 42588930 -113041190 - MER21B LTR ERV1 -174 689 551 1 909 709 229 0 0 chr4 42589783 42589927 -113040193 + B3A SINE B2 1 144 -54 1 909 387 0 0 0 chr4 42589930 42589973 -113040147 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 909 234 137 58 19 chr4 42589997 42590077 -113040043 + (CAAAC)n Simple_repeat Simple_repeat 1 83 0 1 909 319 339 89 12 chr4 42590302 42590550 -113039570 + ERVL-E-int LTR ERVL 3522 3788 -1879 1 909 542 286 90 10 chr4 42590796 42590997 -113039123 - L2a LINE L2 -7 3419 3203 1 909 947 235 0 11 chr4 42591000 42591189 -113038931 + B3A SINE B2 7 193 -5 1 909 403 211 49 69 chr4 42591220 42591322 -113038798 + PB1D9 SINE Alu 2 101 -19 1 909 468 150 0 0 chr4 42591433 42591513 -113038607 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 909 1160 298 231 7 chr4 42591527 42592240 -113037880 - L2a LINE L2 -339 3080 2208 1 909 948 260 45 5 chr4 42592246 42592466 -113037654 + B4A SINE B4 1 229 -63 1 909 713 291 0 0 chr4 42592464 42592612 -113037508 + B3A SINE B2 12 159 -39 1 909 279 0 0 0 chr4 42592640 42592671 -113037449 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 909 442 338 0 7 chr4 42592836 42592976 -113037144 + MTE2b LTR MaLR 27 165 -214 1 909 373 352 80 25 chr4 42592999 42593238 -113036882 + MT2A LTR ERVL 210 461 -72 1 909 236 349 26 35 chr4 42594543 42594656 -113035464 - MTE-int LTR MaLR -475 1105 994 1 909 295 294 58 93 chr4 42594647 42594786 -113035334 + MTE2b LTR MaLR 242 375 -4 1 909 307 212 8 117 chr4 42594812 42594940 -113035180 + Lx5 LINE L1 6906 7044 -14 1 910 703 224 28 0 chr4 42603946 42604089 -113026031 + B1_Mur1 SINE Alu 2 148 -1 1 910 397 284 104 59 chr4 42604596 42604884 -113025236 + L2 LINE L2 2383 2683 -736 1 910 924 256 5 42 chr4 42605304 42605520 -113024600 + B3 SINE B2 2 209 -7 1 910 1293 28 0 0 chr4 42605758 42605903 -113024217 - B1_Mus2 SINE Alu -1 146 2 1 910 268 242 58 39 chr4 42606158 42606261 -113023859 - MER65-int LTR ERV1 -2854 2017 1913 1 910 984 199 78 0 chr4 42606282 42606473 -113023647 - B3 SINE B2 -10 206 1 1 910 644 229 7 27 chr4 42606648 42606664 -113023456 - B1_Mm SINE Alu 0 147 135 1 910 432 0 0 0 chr4 42606664 42606712 -113023408 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 910 644 229 7 27 chr4 42606712 42606843 -113023277 - B1_Mm SINE Alu -13 134 4 1 910 1078 95 0 26 chr4 42606872 42607023 -113023097 - B1_Mus2 SINE Alu 0 147 1 2 910 839 193 25 6 chr4 42607240 42607417 -113022703 - B3 SINE B2 -3 190 1 2 910 333 68 0 0 chr4 42608246 42608290 -113021830 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2 910 310 154 0 19 chr4 42608292 42608345 -113021775 + HAL1-3A_ME LINE L1 1976 2027 -831 2 910 594 184 0 0 chr4 42608345 42608470 -113021650 + (CA)n Simple_repeat Simple_repeat 1 125 0 2 910 228 279 16 0 chr4 42608540 42608601 -113021519 - LTR73 LTR ERV1 -488 84 23 2 910 293 349 118 33 chr4 42608814 42609084 -113021036 - L2 LINE L2 -1216 2203 1911 2 910 639 104 8 17 chr4 42609133 42609250 -113020870 + (GA)n Simple_repeat Simple_repeat 1 116 0 2 910 872 73 97 0 chr4 42610644 42610768 -113019352 + B1_Mus1 SINE Alu 13 148 0 2 910 213 159 0 0 chr4 42610770 42610814 -113019306 + A-rich Low_complexity Low_complexity 1 44 0 2 910 763 268 60 16 chr4 42610949 42611199 -113018921 + Lx8 LINE L1 7136 7396 -77 2 910 2277 123 9 63 chr4 42611202 42611645 -113018475 - IAPLTR2a LTR ERVK -6 405 1 2 910 25012 21 7 2 chr4 42611645 42614589 -113015531 - IAPEz-int LTR ERVK 0 6481 3525 2 910 903 80 24 0 chr4 42614589 42614714 -113015406 - IAPEz-int LTR ERVK -2770 4910 4783 2 910 1808 89 0 0 chr4 42614709 42614955 -113015165 - IAPEz-int LTR ERVK -5183 2497 2252 2 910 901 59 0 8 chr4 42614956 42615076 -113015044 - IAPEz-int LTR ERVK -5004 1477 1359 2 910 3423 81 17 14 chr4 42615076 42615802 -113014318 - IAPEz-int LTR ERVK -5819 662 8 2 910 2280 128 14 77 chr4 42615802 42616257 -113013863 - IAPLTR2a LTR ERVK 0 411 1 2 910 684 222 22 0 chr4 42617200 42617335 -113012785 - B1_Mur1 SINE Alu -5 144 7 2 910 382 302 28 35 chr4 42620048 42620192 -113009928 - MER5A DNA MER1_type -26 163 21 2 910 1077 310 59 34 chr4 42620283 42620691 -113009429 - MT2A LTR ERVL -8 525 108 2 910 406 336 7 87 chr4 42620772 42620922 -113009198 + B4 SINE B4 2 139 -153 2 910 295 298 0 45 chr4 42620940 42621028 -113009092 + RSINE1 SINE B4 82 165 0 2 910 537 30 0 0 chr4 42621028 42621095 -113009025 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 910 252 0 0 0 chr4 42621095 42621122 -113008998 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 910 367 258 53 11 chr4 42621186 42621280 -113008840 - MTEa LTR MaLR -279 100 3 2 910 248 319 10 60 chr4 42621283 42621383 -113008737 + B3 SINE B2 27 121 -95 2 910 251 350 55 99 chr4 42621397 42621429 -113008691 + B4A SINE B4 73 170 -122 2 910 579 190 71 47 chr4 42621429 42621556 -113008564 + B1_Mur1 SINE Alu 12 141 -8 2 910 251 350 55 99 chr4 42621556 42621578 -113008542 + B4A SINE B4 171 245 -47 2 910 411 40 0 0 chr4 42621578 42621628 -113008492 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 2 910 837 161 0 0 chr4 42621628 42621777 -113008343 + GA-rich Low_complexity Low_complexity 2 150 0 2 910 201 74 0 0 chr4 42621892 42621919 -113008201 + (A)n Simple_repeat Simple_repeat 1 27 0 2 910 682 175 78 16 chr4 42621932 42622060 -113008060 - B1_Mur2 SINE Alu 0 149 14 2 910 340 282 13 0 chr4 42622370 42622448 -113007672 + B1_Mus2 SINE Alu 1 79 -68 2 910 352 304 94 59 chr4 42622460 42622715 -113007405 + L1M4 LINE L1 988 1251 -5291 2 910 273 282 58 6 chr4 42622769 42622865 -113007255 + PB1D7 SINE Alu 4 100 -20 2 910 245 301 14 0 chr4 42622800 42622873 -113007247 + ID_B1 SINE B4 113 186 -38 2 910 488 250 53 53 chr4 42622964 42623109 -113007011 + L1M4 LINE L1 3568 3712 -2929 2 910 414 0 0 0 chr4 42623109 42623155 -113006965 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 910 468 0 0 0 chr4 42623233 42623285 -113006835 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 910 570 204 203 7 chr4 42623297 42623435 -113006685 + B3 SINE B2 8 172 -44 2 910 450 53 0 0 chr4 42623437 42623494 -113006626 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 910 774 294 104 58 chr4 42623522 42623599 -113006521 + L1M4 LINE L1 3266 3339 -2807 2 910 982 110 20 27 chr4 42623599 42623748 -113006372 + B1_Mur3 SINE Alu 1 148 -1 2 910 774 294 104 58 chr4 42623748 42624465 -113005655 + L1M4 LINE L1 3340 4097 -2049 2 910 642 89 0 0 chr4 42624491 42624581 -113005539 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 910 689 144 63 0 chr4 42624596 42624707 -113005413 + B1_Mur2 SINE Alu 26 143 -6 2 910 186 43 0 0 chr4 42624709 42624732 -113005388 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 910 635 281 58 0 chr4 42624732 42624974 -113005146 + L1M4 LINE L1 4352 4607 -1539 2 910 269 193 0 0 chr4 42624975 42625032 -113005088 + Lx9 LINE L1 7587 7643 -1 2 910 388 225 12 0 chr4 42625060 42625140 -113004980 + B3A SINE B2 1 81 -117 2 910 256 244 181 31 chr4 42625279 42625406 -113004714 + L1M4 LINE L1 5138 5283 -863 2 910 341 113 47 31 chr4 42626791 42626855 -113003265 - HAL1-3A_ME LINE L1 -818 2040 1976 2 910 678 211 0 0 chr4 42626861 42627134 -113002986 + (TG)n Simple_repeat Simple_repeat 1 273 0 2 910 307 98 0 0 chr4 42627140 42627181 -113002939 - HAL1-3A_ME LINE L1 -846 2012 1972 2 910 448 298 192 26 chr4 42627254 42627484 -113002636 - B4A SINE B4 -23 269 2 2 910 183 232 189 66 chr4 42627562 42627668 -113002452 + L3 LINE CR1 126 244 -4245 2 910 332 299 73 15 chr4 42628537 42628673 -113001447 + B1F SINE Alu 1 144 -5 2 910 280 280 27 0 chr4 42628695 42628770 -113001350 + ID4_ SINE ID 3 79 -4 2 910 1164 121 5 21 chr4 42629479 42629665 -113000455 + B2_Mm2 SINE B2 1 183 -12 2 910 449 235 147 0 chr4 42629654 42629756 -113000364 - B3A SINE B2 0 198 82 2 910 342 61 0 0 chr4 42629802 42629851 -113000269 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 910 1082 110 0 0 chr4 42629880 42630026 -113000094 + B1_Mus1 SINE Alu 3 148 0 2 910 2123 62 0 25 chr4 42630060 42630341 -112999779 + RMER6A LTR ERVK 57 330 -426 2 910 486 0 0 0 chr4 42630368 42630422 -112999698 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 910 1286 162 38 99 chr4 42630429 42630772 -112999348 - RLTRETN_Mm LTR ERVK 0 322 1 2 910 2510 136 49 20 chr4 42630772 42631207 -112998913 + RMER6A LTR ERVK 309 756 0 2 910 255 61 0 0 chr4 42631514 42631547 -112998573 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 910 246 370 43 0 chr4 42631599 42631691 -112998429 - RSINE1 SINE B4 -67 98 3 2 910 431 356 0 0 chr4 42631700 42631846 -112998274 - B1F SINE Alu -3 146 1 2 910 459 0 0 0 chr4 42631901 42631952 -112998168 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 910 482 312 78 21 chr4 42631990 42632183 -112997937 - B4A SINE B4 -21 271 68 2 910 374 342 75 25 chr4 42633683 42633884 -112996236 - MT2A LTR ERVL -113 420 210 2 910 442 338 0 7 chr4 42633907 42634047 -112996073 - MTE2b LTR MaLR -214 165 27 2 910 369 0 0 0 chr4 42634212 42634253 -112995867 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 910 713 291 0 0 chr4 42634281 42634429 -112995691 - B3A SINE B2 -39 159 12 2 910 965 256 45 5 chr4 42634427 42634647 -112995473 - B4A SINE B4 -63 229 1 2 910 1137 297 231 7 chr4 42634653 42635366 -112994754 + L2a LINE L2 2208 3080 -339 2 910 507 134 0 0 chr4 42635380 42635462 -112994658 + (TC)n Simple_repeat Simple_repeat 2 83 0 2 910 403 211 49 69 chr4 42635573 42635675 -112994445 - PB1D9 SINE Alu -19 101 2 2 910 970 230 0 11 chr4 42635706 42635895 -112994225 - B3A SINE B2 -5 193 7 2 910 528 291 90 10 chr4 42635898 42636099 -112994021 + L2a LINE L2 3203 3419 -7 2 910 319 339 89 12 chr4 42636345 42636593 -112993527 - ERVL-E-int LTR ERVL -1879 3788 3522 2 910 234 137 58 19 chr4 42636810 42636890 -112993230 + (GTTTG)n Simple_repeat Simple_repeat 1 83 0 2 910 423 0 0 0 chr4 42636914 42636961 -112993159 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 910 709 229 0 0 chr4 42636964 42637108 -112993012 - B3A SINE B2 -54 144 1 2 910 444 321 14 14 chr4 42637957 42638096 -112992024 + MER21B LTR ERV1 551 689 -174 2 910 1266 54 0 0 chr4 42638803 42638951 -112991169 + B1_Mus1 SINE Alu 1 148 0 2 910 419 78 0 15 chr4 42639238 42639303 -112990817 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 910 586 233 201 41 chr4 42639735 42639823 -112990297 - MER21B LTR ERV1 -308 555 462 2 910 2284 147 43 8 chr4 42639823 42640193 -112989927 - ORR1C2 LTR MaLR -1 383 1 2 910 586 233 201 41 chr4 42640193 42640323 -112989797 - MER21B LTR ERV1 -402 461 302 2 910 381 95 0 0 chr4 42640544 42640607 -112989513 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 910 524 206 167 0 chr4 42640607 42640733 -112989387 - B3A SINE B2 -51 147 1 2 910 501 146 0 0 chr4 42640786 42640868 -112989252 + B1_Mur2 SINE Alu 68 149 0 2 910 211 220 0 17 chr4 42641256 42641295 -112988825 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 910 1162 42 7 40 chr4 42641295 42641445 -112988675 - B1_Mm SINE Alu 0 147 3 2 910 211 220 0 17 chr4 42641445 42641465 -112988655 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2 910 1903 120 92 0 chr4 42641542 42641834 -112988286 - ORR1A2 LTR MaLR -8 319 1 2 910 438 294 0 106 chr4 42641834 42641967 -112988153 + RSINE1 SINE B4 47 164 -1 2 910 959 264 22 40 chr4 42642050 42642326 -112987794 + B4A SINE B4 3 273 -19 2 910 305 47 23 0 chr4 42643958 42644001 -112986119 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 2 910 472 192 18 54 chr4 42644001 42644126 -112985994 - PB1 SINE Alu -1 126 11 2 910 253 366 72 63 chr4 42644159 42644366 -112985754 + MamRep38 DNA hAT 82 290 -5 2 910 333 336 157 43 chr4 42645670 42645845 -112984275 + L2c LINE L2 3047 3240 -147 2 910 264 100 0 0 chr4 42645845 42645885 -112984235 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 910 333 336 157 43 chr4 42645885 42646014 -112984106 + L2c LINE L2 3241 3386 -1 2 910 371 259 119 11 chr4 42648685 42648842 -112981278 - MIR SINE MIR -96 166 1 2 910 410 352 25 0 chr4 42648946 42649108 -112981012 - MIRb SINE MIR -57 211 46 2 910 189 74 0 0 chr4 42649826 42649853 -112980267 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 2 910 445 409 70 29 chr4 42650698 42650940 -112979180 + MER115 DNA Tip100 144 395 -298 2 910 1005 41 0 0 chr4 42651065 42651188 -112978932 + B1_Mus2 SINE Alu 25 147 0 2 910 406 211 57 86 chr4 42651066 42651206 -112978914 + B4A SINE B4 111 246 -46 2 910 392 243 9 0 chr4 42651206 42651317 -112978803 + GA-rich Low_complexity Low_complexity 3 114 0 2 910 278 297 40 0 chr4 42651415 42651489 -112978631 + MER115 DNA Tip100 492 568 -125 2 910 513 84 0 0 chr4 42651611 42651682 -112978438 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 3 910 428 396 22 74 chr4 42651766 42651995 -112978125 - MLT1N2 LTR MaLR -298 264 48 3 910 180 0 0 0 chr4 42652197 42652217 -112977903 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 910 494 248 9 17 chr4 42652217 42652332 -112977788 - MLT1A LTR MaLR -35 339 226 3 910 462 18 0 0 chr4 42652341 42652396 -112977724 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 910 530 215 19 0 chr4 42652477 42652584 -112977536 - ID_B1 SINE B4 0 224 116 3 910 304 297 67 8 chr4 42652584 42652596 -112977524 - B1_Mur1 SINE Alu 0 149 24 3 910 1329 50 0 0 chr4 42652619 42652780 -112977340 + B2_Mm2 SINE B2 2 162 -33 3 910 276 30 0 0 chr4 42652780 42652813 -112977307 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 910 694 219 0 20 chr4 42653484 42653633 -112976487 + B1_Mur1 SINE Alu 2 147 -2 3 910 606 131 0 69 chr4 42653827 42654204 -112975916 + GA-rich Low_complexity Low_complexity 1 350 0 3 910 397 355 113 50 chr4 42654217 42654818 -112975302 - L2 LINE L2 -421 2998 2360 3 910 601 202 47 0 chr4 42656028 42656157 -112973963 + B1F SINE Alu 14 148 -1 3 910 1025 142 37 37 chr4 42656175 42656365 -112973755 + B2_Mm2 SINE B2 2 191 -4 3 910 223 321 8 125 chr4 42656586 42656714 -112973406 + B1F1 SINE Alu 1 113 -36 3 910 310 185 0 24 chr4 42656831 42656914 -112973206 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 910 1015 58 14 48 chr4 42657124 42657207 -112972913 + B1_Mus1 SINE Alu 1 83 -65 3 910 2918 78 78 48 chr4 42657207 42657668 -112972452 - IAPLTR2_Mm LTR ERVK 0 475 1 3 910 1015 58 14 48 chr4 42657668 42657729 -112972391 + B1_Mus1 SINE Alu 84 140 -8 3 910 1043 211 25 5 chr4 42657888 42658088 -112972032 + B3 SINE B2 11 214 -2 3 910 357 286 0 67 chr4 42658156 42658261 -112971859 - ID_B1 SINE B4 -2 222 125 3 910 454 259 61 26 chr4 42658310 42658425 -112971695 - ID_B1 SINE B4 -77 147 29 3 910 750 179 8 0 chr4 42658528 42658651 -112971469 + B3A SINE B2 2 125 -73 3 910 240 86 0 0 chr4 42658665 42658700 -112971420 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 910 1095 223 36 0 chr4 42659370 42659617 -112970503 + Lx6 LINE L1 7179 7434 -26 3 910 545 196 164 82 chr4 42659978 42660161 -112969959 - B3A SINE B2 0 198 1 3 910 1610 223 98 78 chr4 42660176 42660725 -112969395 - Lx8 LINE L1 0 7473 6914 3 910 226 287 81 73 chr4 42660855 42660979 -112969141 + ID_B1 SINE B4 51 175 -49 3 910 420 227 20 30 chr4 42660895 42660995 -112969125 + PB1D10 SINE Alu 12 110 -7 3 910 714 220 30 0 chr4 42661006 42661138 -112968982 + B1_Mur3 SINE Alu 1 136 -13 3 910 351 0 0 0 chr4 42661139 42661178 -112968942 + (ATG)n Simple_repeat Simple_repeat 3 41 0 3 910 233 234 83 21 chr4 42661451 42661547 -112968573 + MER90a LTR ERV1 1 102 -512 3 910 681 329 120 14 chr4 42662040 42662423 -112967697 + MER70A LTR ERVL 11 472 0 3 910 431 217 120 17 chr4 42662902 42663019 -112967101 - MTE2a LTR MaLR 0 379 251 3 910 705 216 145 6 chr4 42663077 42663249 -112966871 - B3A SINE B2 0 198 3 3 910 1354 73 40 0 chr4 42663335 42663512 -112966608 + B2_Mm2 SINE B2 1 184 -11 3 910 201 320 0 0 chr4 42664581 42664656 -112965464 + G-rich Low_complexity Low_complexity 5 79 0 3 910 185 65 0 31 chr4 42665665 42665697 -112964423 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 910 278 261 106 64 chr4 42665712 42665806 -112964314 - RSINE1 SINE B4 -31 134 37 3 910 1307 259 73 87 chr4 42665973 42666583 -112963537 + RLTR1D LTR ERV1 52 611 -13 3 910 614 203 67 8 chr4 42667882 42668016 -112962104 - B1_Mur1 SINE Alu -1 148 7 3 910 408 71 0 0 chr4 42668179 42668235 -112961885 + (CGGGG)n Simple_repeat Simple_repeat 1 56 0 3 910 209 194 0 0 chr4 42668762 42668798 -112961322 + GA-rich Low_complexity Low_complexity 1 36 0 3 910 222 214 0 0 chr4 42670056 42670098 -112960022 + B4 SINE B4 42 83 -209 3 910 243 239 207 18 chr4 42671759 42671870 -112958250 + MIRb SINE MIR 34 165 -103 3 910 248 91 29 29 chr4 42672107 42672175 -112957945 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 910 233 238 46 35 chr4 42672193 42672280 -112957840 - RSINE1 SINE B4 0 165 78 3 910 401 277 40 97 chr4 42672307 42672483 -112957637 - B4 SINE B4 -126 166 1 3 910 330 191 77 17 chr4 42674389 42674506 -112955614 + B1F1 SINE Alu 2 116 -1 3 910 205 316 118 0 chr4 42674579 42674715 -112955405 + L2a LINE L2 2920 3071 -355 3 910 251 278 139 0 chr4 42674762 42674870 -112955250 + L2a LINE L2 3280 3402 -24 3 910 432 0 0 0 chr4 42675622 42675670 -112954450 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 910 191 218 53 35 chr4 42676139 42676196 -112953924 + L2b LINE L2 2510 2567 -852 3 910 273 102 21 21 chr4 42676213 42676269 -112953851 + L2b LINE L2 3326 3383 -4 3 910 881 208 22 17 chr4 42677059 42677240 -112952880 + B3A SINE B2 1 182 -16 3 910 238 302 12 86 chr4 42677584 42677609 -112952511 - YREP_Mm Unknown Unknown -1476 336 324 3 910 491 297 22 7 chr4 42677609 42677748 -112952372 + B1F2 SINE Alu 1 141 -8 3 910 769 197 14 0 chr4 42677764 42677906 -112952214 + B1_Mur3 SINE Alu 1 144 -5 3 910 423 0 0 0 chr4 42677954 42678001 -112952119 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 910 190 344 0 0 chr4 42678314 42678375 -112951745 + L2a LINE L2 3274 3334 -92 3 910 326 299 64 0 chr4 42678672 42678801 -112951319 - L1M5 LINE L1 -582 5658 5523 3 910 221 291 49 25 chr4 42678812 42678893 -112951227 + MIRm SINE MIR 165 247 -29 3 910 657 0 0 0 chr4 42681741 42681814 -112948306 + (CCA)n Simple_repeat Simple_repeat 2 74 0 3 910 369 109 0 0 chr4 42682166 42682221 -112947899 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 910 405 0 0 0 chr4 42682830 42682875 -112947245 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 910 201 234 26 86 chr4 42683612 42683729 -112946391 + G-rich Low_complexity Low_complexity 6 115 0 3 910 204 111 0 0 chr4 42683745 42683781 -112946339 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 3 910 195 100 0 0 chr4 42683830 42683860 -112946260 + (CGG)n Simple_repeat Simple_repeat 2 31 0 3 910 540 0 0 0 chr4 42684206 42684266 -112945854 + (TGG)n Simple_repeat Simple_repeat 3 62 0 3 910 414 0 0 0 chr4 42684522 42684568 -112945552 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 910 180 0 0 0 chr4 42685570 42685590 -112944530 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 3 910 330 129 0 16 chr4 42687597 42687660 -112942460 - MER121 Unknown Unknown -218 194 133 3 910 435 78 0 0 chr4 42688525 42688589 -112941531 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 910 225 0 0 0 chr4 42690141 42690166 -112939954 + (A)n Simple_repeat Simple_repeat 1 25 0 3 910 680 210 116 16 chr4 42690941 42691130 -112938990 + B3 SINE B2 1 208 -8 3 910 679 204 46 118 chr4 42691157 42691352 -112938768 + B3 SINE B2 36 216 0 3 910 240 368 52 13 chr4 42691700 42691739 -112938381 + MIR SINE MIR 90 132 -130 3 910 318 50 0 0 chr4 42691739 42691779 -112938341 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 910 240 368 52 13 chr4 42691779 42691893 -112938227 + MIR SINE MIR 133 249 -13 3 910 351 0 0 0 chr4 42691952 42691991 -112938129 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 910 204 241 103 0 chr4 42692323 42692381 -112937739 - MIRb SINE MIR -79 189 126 3 910 522 0 0 0 chr4 42693648 42693706 -112936414 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 910 207 269 0 0 chr4 42693712 42693764 -112936356 + L3b LINE CR1 240 291 -191 3 910 255 265 0 28 chr4 42694177 42694329 -112935791 + CT-rich Low_complexity Low_complexity 1 147 0 3 910 189 196 0 0 chr4 42695448 42695494 -112934626 + (CCCG)n Simple_repeat Simple_repeat 4 49 0 3 910 24 0 0 0 chr4 42695663 42695687 -112934433 + GC_rich Low_complexity Low_complexity 1 24 0 3 910 245 138 0 97 chr4 42695690 42695762 -112934358 + C-rich Low_complexity Low_complexity 2 66 0 3 910 13214 71 26 14 chr4 42696248 42698492 -112931628 + L1VL2 LINE L1 716 2987 -628 3 910 378 354 93 62 chr4 42698670 42699264 -112930856 + MuRRS4-int LTR ERV1 1804 2415 -5191 3 910 598 367 4 4 chr4 42699320 42699599 -112930521 + MuRRS4-int LTR ERV1 3991 4269 -3337 3 910 2025 291 28 5 chr4 42699996 42700757 -112929363 + MuRRS4-int LTR ERV1 3533 4025 -1038 3 910 547 307 26 26 chr4 42701266 42701497 -112928623 + RLTR6-int LTR ERV1 7476 7706 -72 3 910 2362 118 170 3 chr4 42701601 42701983 -112928137 + RLTR41 LTR ERV1 1 446 0 3 910 408 306 62 62 chr4 42702086 42702278 -112927842 - B3A SINE B2 -1 197 6 3 910 341 240 151 29 chr4 42702335 42702507 -112927613 - L1MD2 LINE L1 -984 5560 5368 3 910 282 331 132 7 chr4 42702572 42702861 -112927259 - L1MD2 LINE L1 -1141 5403 5079 3 910 316 272 12 0 chr4 42702961 42703042 -112927078 + ID4 SINE ID 2 83 0 3 910 594 283 195 21 chr4 42703055 42703357 -112926763 + MTEa LTR MaLR 1 338 -21 3 910 811 286 44 13 chr4 42703436 42703839 -112926281 - L1MD2 LINE L1 -4555 2085 1639 3 910 787 171 29 0 chr4 42703852 42703992 -112926128 - B1_Mur2 SINE Alu -5 144 1 3 910 1067 323 74 4 chr4 42704109 42704675 -112925445 - L1MD2 LINE L1 -5514 1126 505 3 910 232 366 88 22 chr4 42704711 42704848 -112925272 - L1MD2 LINE L1 -6221 326 181 3 910 801 144 53 0 chr4 42705326 42705458 -112924662 + B1_Mm SINE Alu 1 139 -8 3 910 1131 70 0 0 chr4 42705458 42705616 -112924504 + (GGA)n Simple_repeat Simple_repeat 2 159 0 3 910 303 71 0 0 chr4 42705618 42705660 -112924460 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 3 910 1170 207 0 0 chr4 42705877 42706090 -112924030 + B3 SINE B2 1 213 -3 3 910 740 172 31 0 chr4 42706132 42706295 -112923825 + Lx5 LINE L1 6880 7047 -3 3 910 781 246 48 99 chr4 42706458 42706776 -112923344 + ORR1E LTR MaLR 4 303 -56 3 910 833 132 13 53 chr4 42706776 42706928 -112923192 - B1_Mus2 SINE Alu -1 146 1 3 910 781 246 48 99 chr4 42706928 42706984 -112923136 + ORR1E LTR MaLR 304 359 0 3 910 201 39 0 0 chr4 42707421 42707447 -112922673 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 910 319 142 0 39 chr4 42707462 42707529 -112922591 - B2_Mm2 SINE B2 -107 109 47 3 910 1148 124 11 0 chr4 42707595 42707772 -112922348 - B2_Mm1t SINE B2 -14 179 1 4 910 413 187 121 0 chr4 42708136 42708227 -112921893 + B1_Mur3 SINE Alu 7 108 -41 4 910 676 261 57 0 chr4 42708247 42708404 -112921716 - B3 SINE B2 -50 166 1 4 910 2518 61 3 6 chr4 42709106 42709434 -112920686 + ORR1A2 LTR MaLR 1 327 0 4 910 399 21 0 0 chr4 42709532 42709580 -112920540 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 910 450 0 0 0 chr4 42709580 42709629 -112920491 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 910 441 206 167 0 chr4 42709638 42709740 -112920380 - B4A SINE B4 -14 278 160 4 910 284 206 77 0 chr4 42709751 42709833 -112920287 - B4A SINE B4 -193 99 6 4 910 593 284 59 18 chr4 42710150 42710372 -112919748 - L1MA4 LINE L1 -365 5935 5705 4 910 412 313 7 64 chr4 42710565 42710608 -112919512 - RSINE1 SINE B4 -15 150 109 4 910 5071 149 43 5 chr4 42710608 42711531 -112918589 + RMER17B LTR ERVK 1 958 0 4 910 412 313 7 64 chr4 42711531 42711627 -112918493 - RSINE1 SINE B4 -57 108 19 4 910 798 169 0 0 chr4 42711705 42711841 -112918279 - B1_Mur2 SINE Alu 0 149 14 4 910 544 238 26 39 chr4 42711841 42711858 -112918262 - ID_B1 SINE B4 0 224 74 4 910 2125 126 12 3 chr4 42712227 42712570 -112917550 + ORR1A1 LTR MaLR 1 346 0 4 910 1124 75 0 0 chr4 42712941 42713088 -112917032 + B1_Mus2 SINE Alu 1 147 0 4 910 409 259 86 0 chr4 42713146 42713262 -112916858 + B1_Mur1 SINE Alu 24 149 0 4 910 2298 56 0 3 chr4 42713267 42713573 -112916547 + L1Md_F2 LINE L1 6278 6582 0 4 910 217 167 18 18 chr4 42713600 42713655 -112916465 + G-rich Low_complexity Low_complexity 5 59 0 4 910 214 216 19 19 chr4 42714364 42714416 -112915704 + CT-rich Low_complexity Low_complexity 2 53 0 4 910 387 0 0 0 chr4 42715320 42715363 -112914757 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 910 618 124 29 0 chr4 42715367 42715472 -112914648 - B1_Mus2 SINE Alu 0 147 40 4 910 904 186 11 17 chr4 42715475 42715717 -112914403 + (TCTCTG)n Simple_repeat Simple_repeat 1 240 0 4 910 393 381 0 0 chr4 42715597 42715773 -112914347 + C-rich Low_complexity Low_complexity 1 176 0 4 910 265 247 39 13 chr4 42715783 42715802 -112914318 - ID_B1 SINE B4 -67 157 83 4 910 349 148 0 0 chr4 42715802 42715856 -112914264 - B1_Mur4 SINE Alu -95 55 2 4 910 936 247 104 0 chr4 42716062 42716313 -112913807 + B4A SINE B4 2 278 -14 4 910 1293 83 0 0 chr4 42716317 42716497 -112913623 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 910 1149 225 144 22 chr4 42716599 42716783 -112913337 - MTD LTR MaLR -14 405 197 4 910 1317 82 0 0 chr4 42716783 42717138 -112912982 + (TG)n Simple_repeat Simple_repeat 1 355 0 4 910 1149 225 144 22 chr4 42717138 42717306 -112912814 - MTD LTR MaLR -223 196 10 4 910 302 73 0 0 chr4 42717399 42717440 -112912680 + B1_Mus2 SINE Alu 1 41 -106 4 910 201 39 0 0 chr4 42717447 42717473 -112912647 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4 910 959 171 82 39 chr4 42717539 42717746 -112912374 - B3 SINE B2 0 216 1 4 910 419 250 62 7 chr4 42717799 42717944 -112912176 - L1M4b LINE L1 -4069 3265 3113 4 910 252 239 28 0 chr4 42717956 42718027 -112912093 - L1M4b LINE L1 -4276 3058 2986 4 910 253 333 43 0 chr4 42718095 42718125 -112911995 - BC1_Mm scRNA scRNA -48 104 8 4 910 335 222 0 0 chr4 42718125 42718188 -112911932 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 4 910 21 0 0 0 chr4 42718644 42718665 -112911455 + AT_rich Low_complexity Low_complexity 1 21 0 4 910 315 0 0 0 chr4 42718974 42719009 -112911111 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 910 999 169 123 0 chr4 42719338 42719533 -112910587 - MTC LTR MaLR 0 421 203 4 910 429 36 0 0 chr4 42719533 42719588 -112910532 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 4 910 21 0 0 0 chr4 42719611 42719632 -112910488 + AT_rich Low_complexity Low_complexity 1 21 0 4 910 282 35 0 50 chr4 42719633 42719693 -112910427 - B2_Mm2 SINE B2 -2 193 137 4 910 1251 90 6 6 chr4 42719760 42719938 -112910182 - B2_Mm1t SINE B2 -14 179 2 4 910 2080 144 86 15 chr4 42719959 42720063 -112910057 - Lx4B LINE L1 -4 7054 6939 4 910 252 0 0 0 chr4 42720063 42720091 -112910029 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 910 2080 144 86 15 chr4 42720091 42720394 -112909726 - Lx4B LINE L1 -120 6938 6620 4 910 1283 127 5 5 chr4 42720395 42720601 -112909519 - MTC LTR MaLR -215 206 1 4 910 1134 250 22 29 chr4 42721066 42721338 -112908782 + B4 SINE B4 2 271 -21 4 910 486 0 0 0 chr4 42721342 42721396 -112908724 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 910 1862 112 79 38 chr4 42721580 42721923 -112908197 + ORR1B2 LTR MaLR 3 359 -8 4 910 550 214 17 0 chr4 42722090 42722207 -112907913 + MTC LTR MaLR 2 120 -299 4 910 760 194 14 27 chr4 42722568 42722716 -112907404 + B1_Mus1 SINE Alu 2 147 -1 4 910 1661 194 10 10 chr4 42722915 42723227 -112906893 + MTC LTR MaLR 110 421 0 4 910 307 292 30 148 chr4 42723474 42723586 -112906534 - L1M5 LINE L1 -974 5172 5078 4 910 288 270 14 0 chr4 42723586 42723660 -112906460 + ID4 SINE ID 2 76 -7 4 910 307 292 30 148 chr4 42723660 42723716 -112906404 - L1M5 LINE L1 -1069 5077 5024 4 910 236 221 20 131 chr4 42723748 42723847 -112906273 - MLT1A1 LTR MaLR -5 403 316 4 910 427 177 241 0 chr4 42724075 42724216 -112905904 - Lx9 LINE L1 -21 7623 7449 4 910 467 229 111 0 chr4 42724214 42724358 -112905762 + Lx9 LINE L1 7258 7417 -227 4 910 817 226 60 11 chr4 42724637 42724820 -112905300 - MTD LTR MaLR -2 417 226 4 910 500 127 38 0 chr4 42724817 42724896 -112905224 - MTD LTR MaLR -337 82 1 4 910 261 159 0 0 chr4 42725102 42725165 -112904955 + A-rich Low_complexity Low_complexity 1 63 0 4 910 618 229 25 0 chr4 42726257 42726379 -112903741 + B1_Mur1 SINE Alu 7 131 -18 4 911 303 285 33 83 chr4 42730539 42730719 -112899401 - L1MEe LINE L1 -4020 834 664 4 911 1374 77 11 0 chr4 42732566 42732748 -112897372 - B2_Mm1t SINE B2 -8 185 2 4 911 985 263 158 64 chr4 42732935 42733341 -112896779 - RLTR11A2 LTR ERVK -65 462 19 4 911 596 186 61 185 chr4 42733362 42733659 -112896461 - MYSERV-int LTR ERVK -2 6548 6354 4 911 2785 220 35 44 chr4 42733652 42734423 -112895697 - MYSERV6-int LTR ERVK -178 8781 8018 4 911 368 213 0 39 chr4 42734427 42734505 -112895615 - RLTR11A2 LTR ERVK -452 75 1 4 911 243 0 0 0 chr4 42735422 42735449 -112894671 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 911 231 321 84 24 chr4 42735806 42735889 -112894231 - MTE2a LTR MaLR -12 367 280 4 911 419 234 0 0 chr4 42736138 42736215 -112893905 - RSINE1 SINE B4 -34 131 55 4 911 361 208 75 56 chr4 42736215 42736322 -112893798 + RMER1B Other Other 495 603 -463 4 911 293 318 36 18 chr4 42736410 42736522 -112893598 + MLT1A1 LTR MaLR 1 114 -294 4 911 250 268 0 0 chr4 42736593 42736649 -112893471 + RSINE1 SINE B4 2 57 -108 4 911 1058 117 12 0 chr4 42736650 42736813 -112893307 - RMER1B Other Other -309 757 593 4 911 475 241 28 0 chr4 42736914 42737023 -112893097 - B4 SINE B4 -94 198 84 4 911 3375 222 67 72 chr4 42737122 42738192 -112891928 - RMER1B Other Other 0 1066 2 4 911 1563 258 102 25 chr4 42738213 42738734 -112891386 - Lx8 LINE L1 -244 7229 6669 4 911 603 162 105 0 chr4 42738846 42738951 -112891169 + PB1D10 SINE Alu 1 116 -1 4 911 611 195 34 0 chr4 42738954 42739072 -112891048 + B3 SINE B2 85 206 -10 4 911 1051 216 95 109 chr4 42739168 42739472 -112890648 + ORR1E LTR MaLR 25 312 -47 4 911 639 71 0 0 chr4 42739472 42739557 -112890563 + (TCC)n Simple_repeat Simple_repeat 3 87 0 4 911 1051 216 95 109 chr4 42739557 42739590 -112890530 + ORR1E LTR MaLR 313 356 -3 4 911 1952 233 113 26 chr4 42739592 42740152 -112889968 + Lx8 LINE L1 6768 7381 -92 4 911 2283 90 71 20 chr4 42740152 42740502 -112889618 + RLTR9A LTR ERVK 1 368 0 4 911 1952 233 113 26 chr4 42740502 42740584 -112889536 + Lx8 LINE L1 7382 7466 -7 4 911 244 210 169 5 chr4 42740758 42740848 -112889272 + PB1D10 SINE Alu 5 126 -1 4 911 225 0 0 0 chr4 42740848 42740873 -112889247 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 911 281 250 130 49 chr4 42741429 42741614 -112888506 + L1MC2 LINE L1 6120 6319 -25 4 911 2421 78 25 6 chr4 42741704 42742025 -112888095 + ORR1A2 LTR MaLR 1 327 0 4 911 1017 116 66 12 chr4 42742379 42742545 -112887575 + B2_Mm2 SINE B2 2 176 -19 4 911 1018 125 0 11 chr4 42742560 42742738 -112887382 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 4 911 588 247 49 12 chr4 42742763 42742927 -112887193 - Lx7 LINE L1 -655 7041 6872 4 911 790 192 23 28 chr4 42743832 42744009 -112886111 - ORR1A1 LTR MaLR -170 176 1 4 911 530 259 26 39 chr4 42744378 42744395 -112885725 + ID_B1 SINE B4 74 224 0 4 911 813 184 0 0 chr4 42744395 42744531 -112885589 + B1_Mur2 SINE Alu 14 149 0 4 911 222 37 0 0 chr4 42744534 42744561 -112885559 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 4 911 403 281 15 90 chr4 42744646 42744733 -112885387 + RSINE1 SINE B4 28 108 -57 4 911 5785 145 17 7 chr4 42744733 42745680 -112884440 - RMER17B LTR ERVK 0 958 3 4 911 403 281 15 90 chr4 42745680 42745725 -112884395 + RSINE1 SINE B4 109 150 -15 4 911 600 272 63 22 chr4 42745918 42746140 -112883980 + L1MA4 LINE L1 5705 5935 -365 4 911 291 207 146 0 chr4 42746455 42746537 -112883583 + B4 SINE B4 6 99 -193 4 911 478 206 167 0 chr4 42746548 42746650 -112883470 + B4A SINE B4 160 278 -14 4 911 486 0 0 0 chr4 42746659 42746713 -112883407 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 911 696 24 0 0 chr4 42746713 42746794 -112883326 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 911 2688 58 3 6 chr4 42746890 42747218 -112882902 - ORR1A2 LTR MaLR 0 327 1 4 911 278 261 106 64 chr4 42747395 42747489 -112882631 + RSINE1 SINE B4 37 134 -31 4 911 203 61 0 29 chr4 42747504 42747538 -112882582 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 911 1351 46 114 0 chr4 42749700 42749875 -112880245 - B2_Mm2 SINE B2 0 195 1 4 911 661 228 145 6 chr4 42749961 42750133 -112879987 + B3A SINE B2 3 198 0 4 911 431 217 120 17 chr4 42750191 42750308 -112879812 + MTE2a LTR MaLR 251 379 0 4 911 681 329 120 14 chr4 42750779 42751162 -112878958 - MER70A LTR ERVL 0 472 11 4 911 233 234 83 21 chr4 42751712 42751808 -112878312 - MER90a LTR ERV1 -512 102 1 5 911 216 0 0 0 chr4 42752081 42752105 -112878015 + (CAT)n Simple_repeat Simple_repeat 3 26 0 5 911 740 212 30 0 chr4 42752106 42752238 -112877882 - B1_Mur2 SINE Alu -13 136 1 5 911 424 227 20 30 chr4 42752249 42752349 -112877771 - PB1D10 SINE Alu -7 110 12 5 911 250 278 81 73 chr4 42752265 42752389 -112877731 - ID_B1 SINE B4 -49 175 51 5 911 1623 221 98 78 chr4 42752519 42753068 -112877052 + Lx8 LINE L1 6914 7473 0 5 911 545 196 164 82 chr4 42753083 42753266 -112876854 + B3A SINE B2 1 198 0 5 911 1095 223 36 0 chr4 42753627 42753874 -112876246 - Lx6 LINE L1 -26 7434 7179 5 911 222 91 0 0 chr4 42754544 42754577 -112875543 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 911 750 179 8 0 chr4 42754591 42754714 -112875406 - B3A SINE B2 -73 125 2 5 911 454 259 61 26 chr4 42754817 42754932 -112875188 + ID_B1 SINE B4 29 147 -77 5 911 213 295 0 0 chr4 42754937 42754998 -112875122 + GA-rich Low_complexity Low_complexity 1 61 0 5 911 351 286 0 67 chr4 42754999 42755104 -112875016 + ID_B1 SINE B4 125 222 -2 5 911 1017 216 25 5 chr4 42755172 42755372 -112874748 - B3 SINE B2 -2 214 11 5 911 1103 65 14 0 chr4 42755531 42755669 -112874451 - B1_Mus1 SINE Alu -8 140 1 5 911 505 152 0 19 chr4 42755878 42755985 -112874135 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 911 210 321 8 125 chr4 42756102 42756230 -112873890 - B1F1 SINE Alu -36 113 1 5 911 998 148 37 37 chr4 42756451 42756641 -112873479 - B2_Mm2 SINE B2 -4 191 2 5 911 601 202 47 0 chr4 42756659 42756788 -112873332 - B1F SINE Alu -1 148 14 5 911 454 291 32 26 chr4 42756788 42756814 -112873306 - ID_B1 SINE B4 -1 223 68 5 911 4469 18 0 0 chr4 42757553 42758046 -112872074 + MT2_Mm LTR ERVL 1 493 0 5 911 359 335 149 39 chr4 42758501 42759110 -112871010 + L2 LINE L2 2360 3035 -384 5 911 733 112 0 53 chr4 42759117 42759306 -112870814 + CT-rich Low_complexity Low_complexity 1 179 0 5 911 321 273 70 122 chr4 42759309 42759522 -112870598 - HAL1-3A_ME LINE L1 -420 2438 2237 5 911 724 212 0 20 chr4 42759651 42759800 -112870320 - B1_Mur1 SINE Alu -2 147 2 5 911 348 24 0 0 chr4 42760468 42760509 -112869611 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 911 1338 43 0 0 chr4 42760509 42760670 -112869450 - B2_Mm2 SINE B2 -33 162 2 5 911 304 297 67 8 chr4 42760693 42760705 -112869415 + B1_Mur1 SINE Alu 24 149 0 5 911 530 215 19 0 chr4 42760705 42760812 -112869308 + ID_B1 SINE B4 116 224 0 5 911 249 57 0 0 chr4 42760893 42760928 -112869192 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 911 494 248 9 17 chr4 42760937 42761052 -112869068 + MLT1A LTR MaLR 226 339 -35 5 911 180 0 0 0 chr4 42761052 42761072 -112869048 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 911 448 411 36 62 chr4 42761247 42761553 -112868567 + MLT1N2 LTR MaLR 16 313 -249 5 911 552 126 0 0 chr4 42761587 42761674 -112868446 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 5 911 429 188 0 0 chr4 42761968 42762053 -112868067 + CT-rich Low_complexity Low_complexity 2 86 0 5 911 195 222 0 0 chr4 42762068 42762113 -112868007 + CT-rich Low_complexity Low_complexity 3 47 0 5 911 1005 41 0 0 chr4 42762113 42762236 -112867884 - B1_Mus2 SINE Alu 0 147 25 5 911 433 409 70 29 chr4 42762361 42762603 -112867517 - MER115 DNA Tip100 -298 395 144 5 911 189 74 0 0 chr4 42763448 42763475 -112866645 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 5 911 420 346 25 0 chr4 42764194 42764356 -112865764 + MIRb SINE MIR 46 211 -57 5 911 371 259 119 11 chr4 42764459 42764616 -112865504 + MIR SINE MIR 1 166 -96 5 911 344 324 164 49 chr4 42767287 42767416 -112862704 - L2c LINE L2 -1 3386 3240 5 911 231 125 0 0 chr4 42767416 42767456 -112862664 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 911 344 324 164 49 chr4 42767456 42767631 -112862489 - L2c LINE L2 -148 3239 3047 5 911 273 368 56 66 chr4 42768936 42769134 -112860986 - MamRep38 DNA hAT -5 290 95 5 911 475 204 9 36 chr4 42769185 42769297 -112860823 + PB1 SINE Alu 18 126 -1 5 911 218 32 32 0 chr4 42769298 42769329 -112860791 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 5 911 959 264 22 40 chr4 42770961 42771237 -112858883 - B4A SINE B4 -19 273 3 5 911 444 286 0 106 chr4 42771320 42771453 -112858667 - RSINE1 SINE B4 -1 164 47 5 911 1881 123 92 0 chr4 42771453 42771745 -112858375 + ORR1A2 LTR MaLR 1 319 -8 5 911 211 220 0 17 chr4 42771822 42771842 -112858278 + (TAA)n Simple_repeat Simple_repeat 1 20 0 5 911 1162 42 7 40 chr4 42771842 42771992 -112858128 + B1_Mm SINE Alu 3 147 0 5 911 211 220 0 17 chr4 42771992 42772031 -112858089 + (TAA)n Simple_repeat Simple_repeat 3 40 0 5 911 485 158 0 0 chr4 42772418 42772500 -112857620 - B1_Mur2 SINE Alu 0 149 68 5 911 479 228 171 0 chr4 42772553 42772676 -112857444 + B3A SINE B2 1 144 -54 5 911 234 105 0 0 chr4 42772676 42772714 -112857406 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 5 911 643 246 210 46 chr4 42772861 42773068 -112857052 + MER21B LTR ERV1 214 461 -402 5 911 2347 136 43 8 chr4 42773068 42773438 -112856682 + ORR1C2 LTR MaLR 1 383 -1 5 911 643 246 210 46 chr4 42773438 42773511 -112856609 + MER21B LTR ERV1 462 540 -323 5 911 203 170 0 21 chr4 42773959 42774007 -112856113 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 911 201 121 0 0 chr4 42774263 42774296 -112855824 + (T)n Simple_repeat Simple_repeat 1 33 0 5 911 1064 68 0 129 chr4 42774296 42774466 -112855654 - B1_Mus1 SINE Alu 0 148 1 5 911 438 321 14 14 chr4 42775170 42775309 -112854811 - MER21B LTR ERV1 -174 689 551 5 911 752 215 0 0 chr4 42776155 42776299 -112853821 + B3A SINE B2 1 144 -54 5 911 225 0 0 0 chr4 42776302 42776327 -112853793 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 911 257 151 40 79 chr4 42776337 42776438 -112853682 + (CAAA)n Simple_repeat Simple_repeat 2 98 0 5 911 313 328 89 10 chr4 42776708 42776911 -112853209 + ERVL-E-int LTR ERVL 3570 3788 -1879 5 911 536 286 90 10 chr4 42777155 42777356 -112852764 - L2a LINE L2 -7 3419 3203 5 911 977 225 0 11 chr4 42777359 42777548 -112852572 + B3A SINE B2 7 193 -5 5 911 365 232 49 69 chr4 42777579 42777681 -112852439 + PB1D9 SINE Alu 2 101 -19 5 911 576 130 0 0 chr4 42777792 42777884 -112852236 + (GA)n Simple_repeat Simple_repeat 2 93 0 5 911 1158 283 194 10 chr4 42778022 42778611 -112851509 - L2a LINE L2 -515 2904 2208 5 911 936 260 45 5 chr4 42778617 42778837 -112851283 + B4A SINE B4 1 229 -63 5 911 707 291 0 0 chr4 42778835 42778983 -112851137 + B3A SINE B2 12 159 -39 5 911 405 0 0 0 chr4 42779011 42779056 -112851064 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 911 447 299 0 0 chr4 42779221 42779328 -112850792 + MTE2b LTR MaLR 27 133 -246 5 911 396 312 0 55 chr4 42779328 42779367 -112850753 + MT2A LTR ERVL 27 164 -369 5 911 408 312 76 28 chr4 42779382 42779593 -112850527 + MT2A LTR ERVL 208 428 -105 5 911 219 114 0 0 chr4 42779713 42779748 -112850372 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 5 911 449 314 83 26 chr4 42781118 42781311 -112848809 + B4A SINE B4 68 271 -21 5 911 369 0 0 0 chr4 42781349 42781390 -112848730 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 911 383 354 0 0 chr4 42781443 42781573 -112848547 + B1F SINE Alu 1 130 -19 5 911 254 370 43 0 chr4 42781598 42781690 -112848430 + RSINE1 SINE B4 3 98 -67 5 911 183 80 0 0 chr4 42781742 42781767 -112848353 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 911 4259 105 16 89 chr4 42782074 42782508 -112847612 - RMER6A LTR ERVK 0 756 331 5 911 1214 154 47 108 chr4 42782508 42782851 -112847269 + RLTRETN_Mm LTR ERVK 1 322 0 5 911 450 0 0 0 chr4 42782858 42782908 -112847212 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 911 4259 105 16 89 chr4 42782908 42783220 -112846900 - RMER6A LTR ERVK -426 330 57 5 911 1018 77 14 7 chr4 42783259 42783403 -112846717 - B1_Mm SINE Alu 0 147 3 5 911 459 48 0 0 chr4 42783429 42783491 -112846629 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 911 432 186 86 176 chr4 42783537 42783656 -112846464 + B3A SINE B2 82 188 -28 5 911 1263 26 0 25 chr4 42783656 42783814 -112846306 - B2_Mm2 SINE B2 -41 154 1 5 911 216 250 78 0 chr4 42783857 42783921 -112846199 + ID4_ SINE ID 1 69 -14 5 911 225 224 61 0 chr4 42784099 42784148 -112845972 + HAL1 LINE L1 2226 2277 -230 5 911 288 267 27 0 chr4 42784521 42784596 -112845524 - ID4_ SINE ID -4 79 3 5 911 317 299 73 15 chr4 42784619 42784755 -112845365 - B1F SINE Alu -5 144 1 5 911 297 0 0 0 chr4 42785145 42785178 -112844942 + (T)n Simple_repeat Simple_repeat 1 33 0 5 911 195 222 189 66 chr4 42785642 42785748 -112844372 - L3 LINE CR1 -4245 244 126 5 911 297 309 131 26 chr4 42785826 42785979 -112844141 + B4A SINE B4 2 170 -122 5 911 822 195 0 0 chr4 42786106 42786328 -112843792 + (CA)n Simple_repeat Simple_repeat 1 222 0 5 911 343 106 0 0 chr4 42786329 42786376 -112843744 + HAL1-3A_ME LINE L1 1976 2022 -836 5 911 243 250 173 24 chr4 42787770 42787897 -112842223 - L1M4 LINE L1 -863 5781 5636 5 911 380 225 12 0 chr4 42788036 42788116 -112842004 - B3A SINE B2 -117 81 1 5 911 278 193 0 0 chr4 42788144 42788201 -112841919 - Lx9 LINE L1 -1 7643 7587 5 911 682 277 58 0 chr4 42788202 42788444 -112841676 - L1M4 LINE L1 -1539 5105 4850 5 911 186 43 0 0 chr4 42788444 42788467 -112841653 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 911 698 135 63 0 chr4 42788469 42788580 -112841540 - B1_Mur2 SINE Alu -6 143 26 5 911 585 42 0 0 chr4 42788595 42788667 -112841453 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 911 821 282 51 52 chr4 42788743 42789254 -112840866 - L1M4 LINE L1 -2310 4334 3838 5 911 965 110 20 27 chr4 42789254 42789403 -112840717 - B1_Mur3 SINE Alu -1 148 1 6 911 715 314 34 65 chr4 42789403 42789480 -112840640 - L1M4 LINE L1 -2807 3837 3764 5 911 955 202 57 5 chr4 42789495 42789525 -112840595 - B3 SINE B2 -5 211 180 6 911 807 66 0 0 chr4 42789525 42789631 -112840489 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 911 955 202 57 5 chr4 42789631 42789794 -112840326 - B3 SINE B2 -37 179 8 6 911 432 239 72 36 chr4 42789886 42790025 -112840095 - L1M4 LINE L1 -2933 3711 3568 5 911 246 301 14 0 chr4 42790116 42790189 -112839931 - ID_B1 SINE B4 -38 186 113 6 911 283 269 58 6 chr4 42790124 42790220 -112839900 - PB1D7 SINE Alu -20 100 4 6 911 356 333 98 16 chr4 42790274 42790404 -112839716 - L1M4 LINE L1 -5291 1251 1118 5 911 216 0 0 0 chr4 42790404 42790428 -112839692 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 911 356 333 98 16 chr4 42790428 42790541 -112839579 - L1M4 LINE L1 -5425 1117 988 5 911 355 282 13 0 chr4 42790553 42790631 -112839489 - B1_Mus2 SINE Alu -68 79 1 6 911 719 167 79 8 chr4 42790941 42791068 -112839052 + B1_Mur2 SINE Alu 14 149 0 6 911 276 30 0 0 chr4 42791189 42791222 -112838898 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 6 911 608 120 10 0 chr4 42791235 42791335 -112838785 + (TC)n Simple_repeat Simple_repeat 2 102 0 6 911 634 186 46 46 chr4 42791338 42791468 -112838652 - B1_Mur1 SINE Alu -8 141 12 6 911 234 309 58 96 chr4 42791396 42791500 -112838620 - B4A SINE B4 -120 172 73 6 911 235 323 19 57 chr4 42791509 42791614 -112838506 - B3 SINE B2 -89 127 27 6 911 384 247 53 11 chr4 42791617 42791711 -112838409 + MTEa LTR MaLR 3 100 -279 6 911 338 274 0 23 chr4 42791807 42791893 -112838227 - RSINE1 SINE B4 0 165 82 6 911 413 329 7 87 chr4 42791911 42792061 -112838059 - B4 SINE B4 -153 139 2 6 911 1050 310 62 25 chr4 42792142 42792545 -112837575 + MT2A LTR ERVL 108 525 -8 6 911 366 309 28 35 chr4 42792636 42792780 -112837340 + MER5A DNA MER1_type 21 163 -26 6 911 658 237 22 0 chr4 42795498 42795633 -112834487 + B1_Mur1 SINE Alu 7 144 -5 6 911 851 265 62 56 chr4 42796524 42796828 -112833292 - Lx8 LINE L1 -32 7441 7136 6 911 227 29 57 0 chr4 42796966 42797001 -112833119 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 911 885 65 97 0 chr4 42797001 42797125 -112832995 - B1_Mus1 SINE Alu 0 148 13 6 911 435 174 8 148 chr4 42797024 42797152 -112832968 - MT2B LTR ERVL -337 264 155 6 911 182 354 113 44 chr4 42798559 42798922 -112831198 + L2 LINE L2 1816 2203 -1216 6 911 920 152 0 11 chr4 42799262 42799442 -112830678 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 911 486 49 0 0 chr4 42799449 42799510 -112830610 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 911 841 190 23 1 chr4 42799959 42800140 -112829980 + B3 SINE B2 1 195 0 6 911 1228 54 0 0 chr4 42800330 42800477 -112829643 + B1_Mm SINE Alu 1 147 0 6 911 204 40 0 0 chr4 42800477 42800502 -112829618 + (A)n Simple_repeat Simple_repeat 1 25 0 6 911 624 229 7 27 chr4 42800516 42800647 -112829473 + B1_Mm SINE Alu 3 133 -14 6 911 450 0 0 0 chr4 42800647 42800697 -112829423 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 911 624 229 7 27 chr4 42800697 42800713 -112829407 + B1_Mm SINE Alu 134 146 -1 6 911 928 204 78 0 chr4 42800888 42801079 -112829041 + B3 SINE B2 1 206 -10 6 911 290 224 68 48 chr4 42801099 42801202 -112828918 + MER65-int LTR ERV1 1913 2017 -2854 6 911 1205 55 0 7 chr4 42801457 42801603 -112828517 + B1_Mus2 SINE Alu 2 146 -1 6 911 868 261 5 42 chr4 42801851 42802067 -112828053 - B3 SINE B2 -7 209 2 6 911 439 284 95 56 chr4 42802493 42802777 -112827343 - L2 LINE L2 -742 2677 2383 6 911 654 231 28 0 chr4 42803286 42803429 -112826691 - B1_Mur1 SINE Alu -1 148 2 6 911 343 212 8 110 chr4 42808569 42808696 -112821424 - Lx5 LINE L1 -14 7044 6906 6 911 308 286 58 93 chr4 42808722 42808861 -112821259 - MTEa LTR MaLR -4 375 242 6 911 304 319 24 32 chr4 42808842 42808965 -112821155 + MTE-int LTR MaLR 984 1105 -475 6 911 226 328 80 66 chr4 42808988 42809125 -112820995 + MTEa LTR MaLR 101 239 -120 6 911 283 296 88 44 chr4 42809139 42809252 -112820868 + MTEa LTR MaLR 255 372 -7 6 911 277 59 59 0 chr4 42810495 42810546 -112819574 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 911 408 205 13 0 chr4 42811088 42811166 -112818954 - ORR1D2 LTR MaLR -289 81 3 6 911 472 284 208 54 chr4 42811212 42811371 -112818749 + L1MCa LINE L1 970 1182 -5326 6 911 190 0 0 62 chr4 42811371 42811403 -112818717 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 911 472 284 208 54 chr4 42811403 42811575 -112818545 + L1MCa LINE L1 1183 1351 -5157 6 911 900 206 43 11 chr4 42811898 42812084 -112818036 + B3 SINE B2 21 212 -4 6 911 501 97 0 0 chr4 42812222 42812294 -112817826 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 911 210 71 0 0 chr4 42812790 42812818 -112817302 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 911 501 127 38 0 chr4 42813026 42813105 -112817015 + MTD LTR MaLR 1 82 -337 6 911 827 231 55 6 chr4 42813102 42813285 -112816835 + MTD LTR MaLR 226 417 -2 6 911 324 263 119 0 chr4 42813564 42813682 -112816438 - Lx9 LINE L1 -227 7417 7286 6 911 421 179 243 0 chr4 42813707 42813847 -112816273 + Lx9 LINE L1 7450 7623 -21 6 911 235 232 20 131 chr4 42814075 42814174 -112815946 + MLT1A1 LTR MaLR 316 403 -5 6 911 273 270 14 0 chr4 42814256 42814330 -112815790 - ID4 SINE ID -7 76 2 6 911 252 172 12 219 chr4 42814450 42814532 -112815588 + ORR1C1 LTR MaLR 1 65 -313 6 911 2286 183 12 7 chr4 42814680 42815088 -112815032 - MTC LTR MaLR 0 421 12 6 911 1990 106 78 41 chr4 42815265 42815609 -112814511 - ORR1B2 LTR MaLR -8 359 3 6 911 1197 247 24 28 chr4 42815789 42816080 -112814040 - B4 SINE B4 -1 291 2 6 911 1354 127 5 5 chr4 42816545 42816751 -112813369 + MTC LTR MaLR 1 206 -215 6 911 2178 136 89 17 chr4 42816752 42817055 -112813065 + Lx4B LINE L1 6618 6921 -137 6 911 252 0 0 0 chr4 42817055 42817083 -112813037 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 911 2178 136 89 17 chr4 42817083 42817184 -112812936 + Lx4B LINE L1 6922 7050 -8 6 911 22 0 0 0 chr4 42817184 42817206 -112812914 + AT_rich Low_complexity Low_complexity 1 22 0 6 911 1317 90 6 6 chr4 42817208 42817386 -112812734 + B2_Mm1t SINE B2 2 179 -14 6 911 306 35 0 50 chr4 42817453 42817513 -112812607 + B2_Mm2 SINE B2 137 193 -2 6 911 21 0 0 0 chr4 42817514 42817535 -112812585 + AT_rich Low_complexity Low_complexity 1 21 0 6 911 1183 184 59 18 chr4 42817546 42817560 -112812560 + MTC LTR MaLR 192 202 -219 6 911 639 0 0 0 chr4 42817560 42817631 -112812489 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 6 911 1183 184 59 18 chr4 42817631 42817837 -112812283 + MTC LTR MaLR 203 421 0 6 911 355 222 0 0 chr4 42818957 42819020 -112811100 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 6 911 254 333 43 0 chr4 42819020 42819050 -112811070 + BC1_Mm scRNA scRNA 8 104 -48 6 911 239 229 43 0 chr4 42819118 42819188 -112810932 + L1M4b LINE L1 2986 3058 -4276 6 911 402 257 62 7 chr4 42819200 42819345 -112810775 + L1M4b LINE L1 3113 3265 -4069 6 911 930 122 191 11 chr4 42819398 42819546 -112810574 + B3 SINE B2 1 180 -36 6 911 459 0 0 0 chr4 42819546 42819597 -112810523 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 911 930 122 191 11 chr4 42819597 42819631 -112810489 + B3 SINE B2 181 216 0 6 911 218 184 41 0 chr4 42819643 42819692 -112810428 + B4A SINE B4 1 51 -241 6 911 331 0 0 0 chr4 42819717 42819758 -112810362 - B1_Mus2 SINE Alu -106 41 1 6 911 1188 217 160 24 chr4 42819849 42820020 -112810100 + MTD LTR MaLR 1 197 -222 6 911 564 15 0 0 chr4 42820020 42820085 -112810035 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 911 1188 217 160 24 chr4 42820085 42820282 -112809838 + MTD LTR MaLR 198 418 -1 6 911 1305 75 0 0 chr4 42820339 42820754 -112809366 + (TG)n Simple_repeat Simple_repeat 1 415 0 6 911 1010 240 108 4 chr4 42820757 42821008 -112809112 - B4A SINE B4 -14 278 2 6 911 439 272 70 118 chr4 42821129 42821214 -112808906 + B4 SINE B4 9 225 -66 6 911 885 147 21 0 chr4 42821214 42821357 -112808763 + B1_Mus2 SINE Alu 2 147 0 6 911 492 18 0 0 chr4 42821359 42821416 -112808704 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 911 204 219 24 0 chr4 42822343 42822384 -112807736 + GA-rich Low_complexity Low_complexity 2 43 0 6 911 4519 118 10 7 chr4 42822397 42823091 -112807029 - RMER17B LTR ERVK -262 696 1 6 911 617 276 63 22 chr4 42823326 42823548 -112806572 + L1MA4 LINE L1 5705 5935 -365 6 911 285 207 146 0 chr4 42823865 42823947 -112806173 + B4 SINE B4 6 99 -193 6 911 466 216 167 0 chr4 42823958 42824060 -112806060 + B4A SINE B4 160 278 -14 6 911 450 0 0 0 chr4 42824069 42824119 -112806001 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 911 342 0 0 0 chr4 42824119 42824156 -112805964 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 911 2648 61 3 6 chr4 42824254 42824582 -112805538 - ORR1A2 LTR MaLR 0 327 1 6 911 743 255 57 0 chr4 42825284 42825441 -112804679 + B3 SINE B2 1 166 -50 6 911 447 196 118 5 chr4 42825446 42825552 -112804568 - B1_Mur3 SINE Alu -30 119 7 6 911 1267 107 11 0 chr4 42825916 42826093 -112804027 + B2_Mm1a SINE B2 1 179 -14 6 911 325 159 0 39 chr4 42826159 42826226 -112803894 + B2_Mm2 SINE B2 47 109 -107 6 911 531 0 0 0 chr4 42826240 42826299 -112803821 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 6 911 891 246 40 98 chr4 42826736 42826792 -112803328 - ORR1E LTR MaLR 0 359 304 6 911 922 132 14 20 chr4 42826792 42826939 -112803181 + B1_Mus2 SINE Alu 1 146 -1 6 911 891 246 40 98 chr4 42826939 42827260 -112802860 - ORR1E LTR MaLR -56 303 4 6 911 1636 26 0 20 chr4 42827408 42827604 -112802516 - B2_Mm1a SINE B2 0 193 2 6 911 755 190 31 0 chr4 42827624 42827787 -112802333 - Lx5 LINE L1 -3 7047 6880 6 911 1185 194 9 9 chr4 42827827 42828040 -112802080 - B3 SINE B2 -3 213 1 6 911 602 113 9 0 chr4 42828268 42828374 -112801746 + (TCC)n Simple_repeat Simple_repeat 1 107 0 6 911 823 164 50 0 chr4 42828374 42828514 -112801606 - B1_Mm SINE Alu 0 147 1 6 911 316 304 11 32 chr4 42829026 42829121 -112800999 + L1MD2 LINE L1 234 326 -6221 6 911 1155 309 109 9 chr4 42829157 42829722 -112800398 + L1MD2 LINE L1 505 1126 -5514 6 911 779 193 29 0 chr4 42829845 42829985 -112800135 + B1_Mur2 SINE Alu 1 144 -5 6 911 784 290 17 20 chr4 42830008 42830307 -112799813 + L1MD2 LINE L1 1641 1938 -4702 6 911 613 279 196 22 chr4 42830505 42830776 -112799344 - MTEa LTR MaLR -61 318 1 7 911 323 269 13 0 chr4 42830782 42830860 -112799260 - ID4 SINE ID -3 80 2 7 911 240 308 44 0 chr4 42830955 42831046 -112799074 + L1MD2 LINE L1 5079 5173 -1371 6 911 300 319 26 17 chr4 42831133 42831248 -112798872 + L1M4 LINE L1 4890 5005 -1141 7 911 339 220 176 57 chr4 42831313 42831540 -112798580 + L1M4 LINE L1 4970 5223 -923 7 911 454 324 52 52 chr4 42831541 42831733 -112798387 + B3A SINE B2 6 197 -1 7 911 2553 116 171 0 chr4 42831836 42832217 -112797903 - RLTR41 LTR ERV1 0 446 1 7 911 548 308 22 22 chr4 42832316 42832554 -112797566 - RLTR6-int LTR ERV1 -90 7688 7476 7 911 2088 258 16 4 chr4 42833325 42833812 -112796308 - MuRRS4-int LTR ERV1 -1038 4025 3533 7 911 496 379 3 3 chr4 42834207 42834490 -112795630 - MuLV-int LTR ERV1 -3333 4273 3991 7 911 308 344 114 58 chr4 42834497 42835139 -112794981 - MuLV-int LTR ERV1 -5140 2466 1789 7 911 14166 68 25 13 chr4 42835315 42837559 -112792561 - L1VL2 LINE L1 -628 2987 716 7 911 297 186 0 28 chr4 42837649 42837721 -112792399 + L1M LINE L1 5338 5407 -772 7 911 936 182 5 43 chr4 42837874 42838058 -112792062 + B3 SINE B2 20 196 -20 7 911 1280 124 5 0 chr4 42838180 42838366 -112791754 + B2_Mm2 SINE B2 1 187 -8 7 911 626 130 0 9 chr4 42838624 42838733 -112791387 + (CA)n Simple_repeat Simple_repeat 2 109 0 7 911 676 219 183 50 chr4 42839090 42839330 -112790790 - RLTR10A LTR ERVK 0 411 140 7 911 339 225 24 24 chr4 42839472 42839554 -112790566 + PB1 SINE Alu 39 120 -7 7 911 4560 106 32 18 chr4 42839720 42840438 -112789682 - RMER6A LTR ERVK -28 728 1 7 911 965 250 168 8 chr4 42840642 42840904 -112789216 + RMER1B Other Other 229 532 -534 7 911 1291 172 239 3 chr4 42840933 42841218 -112788902 + RMER1B Other Other 353 704 -362 7 911 573 161 61 45 chr4 42841296 42841460 -112788660 + RMER1B Other Other 850 1066 0 7 911 323 375 8 0 chr4 42841480 42841608 -112788512 - MLT1A0 LTR MaLR -120 245 117 7 911 186 43 0 0 chr4 42842283 42842306 -112787814 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 911 218 89 44 0 chr4 42842400 42842445 -112787675 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 7 911 211 182 0 0 chr4 42842575 42842608 -112787512 + polypyrimidine Low_complexity Low_complexity 2 34 0 7 911 501 313 70 9 chr4 42843105 42843334 -112786786 - L1M5 LINE L1 -452 5727 5485 7 911 805 74 16 8 chr4 42843335 42843457 -112786663 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 7 911 1113 188 14 24 chr4 42843480 42843692 -112786428 - B3 SINE B2 -1 215 6 7 911 395 229 81 8 chr4 42843692 42843815 -112786305 - L1M5 LINE L1 -690 5489 5358 7 911 387 0 0 0 chr4 42843834 42843877 -112786243 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 911 270 0 0 0 chr4 42843877 42843906 -112786214 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 911 613 247 73 7 chr4 42843932 42844083 -112786037 - RSINE1 SINE B4 -2 163 3 7 911 667 272 65 14 chr4 42844085 42844301 -112785819 - B4A SINE B4 -64 228 2 7 911 303 289 60 6 chr4 42844307 42844474 -112785646 - L1MD LINE L1 -872 5274 5099 7 911 587 290 76 31 chr4 42844555 42845163 -112784957 - L1MD LINE L1 -3338 2808 2160 7 911 381 275 111 14 chr4 42845168 42845312 -112784808 + Tigger7 DNA MER2_type 2308 2465 -26 7 911 794 330 73 13 chr4 42845415 42845716 -112784404 + MLT2F LTR ERVL 261 579 -84 7 911 738 198 0 0 chr4 42845738 42845905 -112784215 + (CA)n Simple_repeat Simple_repeat 2 168 0 7 911 314 197 0 57 chr4 42845908 42845978 -112784142 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 7 911 312 239 33 22 chr4 42846233 42846323 -112783797 + ORR1D2 LTR MaLR 280 370 0 7 911 476 284 27 54 chr4 42846323 42846509 -112783611 + ORR1D2-int LTR MaLR 1 181 -1399 7 911 387 0 0 0 chr4 42846716 42846759 -112783361 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 911 267 202 161 35 chr4 42846968 42847055 -112783065 + RMER10A LTR ERVL 318 415 -27 7 911 891 302 96 75 chr4 42847077 42847610 -112782510 + ORR1D2-int LTR MaLR 169 712 -868 7 911 259 175 46 31 chr4 42847612 42847677 -112782443 - MTEb LTR MaLR -14 365 294 7 911 737 243 133 31 chr4 42847677 42847872 -112782248 + B3 SINE B2 1 215 -1 7 911 261 324 47 9 chr4 42848158 42848264 -112781856 - ORR1E LTR MaLR -249 110 1 7 911 473 274 24 54 chr4 42848838 42849004 -112781116 + RSINE1 SINE B4 5 165 0 7 911 25 0 0 0 chr4 42849029 42849054 -112781066 + AT_rich Low_complexity Low_complexity 1 25 0 7 911 857 233 47 16 chr4 42849233 42849425 -112780695 - B3A SINE B2 0 198 1 7 911 242 255 0 0 chr4 42850700 42850747 -112779373 + polypyrimidine Low_complexity Low_complexity 3 49 0 7 911 1426 233 83 41 chr4 42850751 42851114 -112779006 - MTD LTR MaLR -4 415 38 7 911 349 240 13 0 chr4 42851122 42851197 -112778923 - PB1D10 SINE Alu -37 80 5 7 911 600 77 0 0 chr4 42851711 42851802 -112778318 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 7 911 748 249 69 86 chr4 42851832 42852122 -112777998 - B4 SINE B4 0 292 8 7 911 3647 62 4 13 chr4 42852969 42853441 -112776679 + L1_Mus2 LINE L1 6098 6565 -1 7 911 247 0 79 0 chr4 42853446 42853484 -112776636 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 7 911 693 317 95 45 chr4 42853584 42853827 -112776293 - ORR1E LTR MaLR 0 359 93 7 911 1426 109 17 48 chr4 42853827 42854057 -112776063 + URR1B DNA MER1_type 3 225 0 7 911 693 317 95 45 chr4 42854057 42854150 -112775970 - ORR1E LTR MaLR -267 92 6 7 911 188 400 0 0 chr4 42854560 42854625 -112775495 + L2 LINE L2 1601 1665 -1754 7 911 591 222 157 61 chr4 42854722 42854919 -112775201 - B3 SINE B2 0 216 1 7 911 1559 135 96 4 chr4 42855158 42855419 -112774701 - ORR1B1 LTR MaLR -69 325 41 7 911 25 31 0 0 chr4 42855560 42855592 -112774528 + AT_rich Low_complexity Low_complexity 1 32 0 7 911 447 68 0 0 chr4 42855624 42855683 -112774437 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 911 1950 118 136 20 chr4 42855683 42856036 -112774084 + ORR1B1 LTR MaLR 1 394 0 7 911 447 19 0 0 chr4 42856230 42856282 -112773838 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 911 2241 140 6 0 chr4 42856610 42856952 -112773168 + RLTR14 LTR ERV1 4 347 -35 7 911 3213 43 0 13 chr4 42857120 42857516 -112772604 + L1Md_F2 LINE L1 6192 6582 0 7 911 310 290 106 91 chr4 42857598 42857993 -112772127 - RMER10A LTR ERVL -25 417 17 7 911 2445 143 32 7 chr4 42858259 42858669 -112771451 + MTC LTR MaLR 1 400 -21 7 911 376 257 14 0 chr4 42859189 42859263 -112770857 + B3 SINE B2 110 184 -32 7 911 742 195 0 30 chr4 42859759 42859891 -112770229 + B2_Mm2 SINE B2 2 129 -66 7 911 22 0 0 0 chr4 42859899 42859921 -112770199 + AT_rich Low_complexity Low_complexity 1 22 0 7 911 1218 54 0 20 chr4 42859969 42860120 -112770000 + B1_Mus1 SINE Alu 1 148 0 7 911 450 0 0 0 chr4 42860145 42860195 -112769925 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 912 229 273 79 11 chr4 42865349 42865438 -112764682 - LTR79 LTR ERVL -31 496 402 7 912 237 291 94 28 chr4 42865383 42865489 -112764631 - Charlie6 DNA MER1_type -1178 2322 2210 7 912 1358 77 11 0 chr4 42868030 42868211 -112761909 - B2_Mm1t SINE B2 -9 184 2 7 912 924 265 36 88 chr4 42868391 42868821 -112761299 - RLTR11A2 LTR ERVK -27 414 1 7 912 616 249 53 21 chr4 42868822 42869011 -112761109 - MYSERV-int LTR ERVK -2 6548 6354 7 912 2917 220 35 48 chr4 42869111 42869885 -112760235 - MYSERV6-int LTR ERVK -178 8781 8018 7 912 360 213 0 39 chr4 42869889 42869967 -112760153 - RLTR11A2 LTR ERVK -452 75 1 7 912 232 321 84 24 chr4 42871256 42871339 -112758781 - MTE2a LTR MaLR -12 367 280 7 912 415 234 0 0 chr4 42871587 42871664 -112758456 - RSINE1 SINE B4 -34 131 55 7 912 426 198 75 56 chr4 42871664 42871771 -112758349 + RMER1B Other Other 495 603 -463 7 912 280 294 98 25 chr4 42871859 42871981 -112758139 + MLT1A0 LTR MaLR 1 131 -234 7 912 246 268 0 0 chr4 42872042 42872098 -112758022 + RSINE1 SINE B4 2 57 -108 7 912 1132 110 12 0 chr4 42872099 42872262 -112757858 - RMER1B Other Other -309 757 593 7 912 460 233 22 0 chr4 42872382 42872472 -112757648 - B4 SINE B4 -117 175 84 7 912 3844 216 67 70 chr4 42872571 42873639 -112756481 - RMER1B Other Other -1 1065 2 7 912 1800 257 92 24 chr4 42873646 42874189 -112755931 - Lx8 LINE L1 -225 7248 6669 7 912 589 162 105 0 chr4 42874304 42874409 -112755711 + PB1D10 SINE Alu 1 116 -1 7 912 615 189 32 8 chr4 42874412 42874535 -112755585 + B3 SINE B2 85 210 -6 7 912 970 222 96 111 chr4 42874625 42874929 -112755191 + ORR1E LTR MaLR 25 312 -47 7 912 627 71 0 0 chr4 42874929 42875014 -112755106 + (TCC)n Simple_repeat Simple_repeat 3 87 0 7 912 970 222 96 111 chr4 42875014 42875043 -112755077 + ORR1E LTR MaLR 313 352 -7 7 912 2202 231 111 26 chr4 42875044 42875603 -112754517 + Lx8 LINE L1 6772 7381 -92 7 912 2196 93 71 23 chr4 42875603 42875953 -112754167 + RLTR9A LTR ERVK 2 368 0 7 912 2202 231 111 26 chr4 42875953 42876034 -112754086 + Lx8 LINE L1 7382 7466 -7 7 912 230 214 239 33 chr4 42876208 42876300 -112753820 + PB1D10 SINE Alu 5 115 -2 7 912 207 0 0 0 chr4 42876300 42876323 -112753797 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 912 318 253 126 47 chr4 42876884 42877075 -112753045 + L1MC2 LINE L1 6114 6319 -25 7 912 2415 75 25 6 chr4 42877166 42877487 -112752633 + ORR1A2 LTR MaLR 1 327 0 7 912 1056 148 27 16 chr4 42877841 42877996 -112752124 + B2_Mm2 SINE B2 2 159 -36 7 912 506 16 16 0 chr4 42877996 42878059 -112752061 + (GAAAA)n Simple_repeat Simple_repeat 4 67 0 7 912 1056 148 27 16 chr4 42878059 42878089 -112752031 + B2_Mm2 SINE B2 160 189 -6 7 912 524 242 87 7 chr4 42878092 42878242 -112751878 - Lx7 LINE L1 -663 7033 6872 7 912 272 258 0 0 chr4 42878287 42878353 -112751767 + Lx7 LINE L1 7615 7680 -16 7 912 600 14 0 0 chr4 42879549 42879618 -112750502 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 912 986 130 7 0 chr4 42879858 42880004 -112750116 - B1_Mus1 SINE Alu -1 147 1 7 912 243 333 91 10 chr4 42880028 42880237 -112749883 + L2 LINE L2 1984 2209 -1210 7 912 183 156 0 0 chr4 42880243 42880275 -112749845 + CT-rich Low_complexity Low_complexity 1 32 0 8 912 228 67 0 0 chr4 42883919 42883949 -112746171 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 912 41 0 0 0 chr4 42885457 42885498 -112744622 + AT_rich Low_complexity Low_complexity 1 41 0 8 912 477 100 316 35 chr4 42887495 42887609 -112742511 - B2_Mm2 SINE B2 -4 191 46 8 912 1331 90 11 0 chr4 42887645 42887822 -112742298 - B2_Mm1t SINE B2 -13 180 2 8 912 288 260 91 0 chr4 42887950 42888027 -112742093 + L1MB4 LINE L1 6054 6137 -43 8 912 315 327 20 10 chr4 42889083 42889185 -112740935 - PB1D10 SINE Alu -5 112 10 8 912 369 0 0 0 chr4 42889629 42889670 -112740450 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 912 242 346 75 0 chr4 42890042 42890149 -112739971 + MER5B DNA MER1_type 1 115 -63 8 912 2258 61 3 6 chr4 42890216 42890529 -112739591 + ORR1A2 LTR MaLR 16 327 0 8 912 688 150 133 8 chr4 42890605 42890733 -112739387 - B1_Mur2 SINE Alu -1 148 5 8 912 1232 41 0 0 chr4 42890925 42891072 -112739048 + B1_Mus2 SINE Alu 1 147 0 8 912 219 139 0 0 chr4 42891072 42891108 -112739012 + (A)n Simple_repeat Simple_repeat 1 36 0 8 912 397 282 115 34 chr4 42891329 42891538 -112738582 + MLT1A1 LTR MaLR 171 396 -12 8 912 229 225 21 63 chr4 42891678 42891773 -112738347 + L1M2 LINE L1 3506 3596 -2547 8 912 546 244 247 14 chr4 42891762 42892041 -112738079 - Lx7 LINE L1 -362 5938 5589 8 912 258 317 39 39 chr4 42892037 42892165 -112737955 + L1MC LINE L1 4095 4222 -1924 8 912 243 0 0 0 chr4 42892193 42892220 -112737900 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 912 721 167 15 29 chr4 42892340 42892476 -112737644 - B1_Mur4 SINE Alu -5 145 12 8 912 261 281 178 28 chr4 42892506 42892859 -112737261 + L1M5 LINE L1 4376 4792 -1354 8 912 1826 209 141 23 chr4 42893474 42893920 -112736200 + RMER15 LTR ERVL 41 540 -35 8 912 396 0 0 0 chr4 42893920 42893964 -112736156 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 912 1826 209 141 23 chr4 42893964 42893993 -112736127 + RMER15 LTR ERVL 541 571 -4 8 912 1211 194 79 58 chr4 42894030 42894358 -112735762 - RLTR19 LTR ERVK 0 499 165 8 912 1174 97 80 0 chr4 42894358 42894522 -112735598 + B2_Mm2 SINE B2 1 176 -19 8 912 1414 59 5 16 chr4 42894522 42894712 -112735408 - B2_Mm2 SINE B2 -7 188 1 8 912 889 122 0 85 chr4 42895811 42895999 -112734121 - L1_Mur2 LINE L1 -1885 3992 3821 8 912 6298 150 60 20 chr4 42895999 42897171 -112732949 + Lx4B LINE L1 5841 7058 0 8 912 30 0 0 0 chr4 42897176 42897206 -112732914 + AT_rich Low_complexity Low_complexity 1 30 0 8 912 288 326 38 27 chr4 42897341 42897527 -112732593 + L1M5 LINE L1 4802 4989 -1157 8 912 377 200 0 0 chr4 42897560 42897645 -112732475 + L1MB4 LINE L1 6095 6179 -1 8 912 320 167 71 71 chr4 42897797 42897881 -112732239 + RLTR25B LTR ERVK 426 509 -519 8 912 874 35 0 0 chr4 42897809 42897924 -112732196 + B1_Mm SINE Alu 33 147 0 8 912 48 0 0 0 chr4 42897924 42897972 -112732148 + AT_rich Low_complexity Low_complexity 1 48 0 8 912 362 152 91 0 chr4 42898351 42898417 -112731703 + B1F SINE Alu 43 114 -35 8 912 681 206 35 121 chr4 42898649 42898848 -112731272 + Lx9 LINE L1 6733 6914 -730 8 912 815 206 0 7 chr4 42899164 42899311 -112730809 + B1_Mus2 SINE Alu 2 147 0 8 912 306 0 0 0 chr4 42899376 42899410 -112730710 + (TTG)n Simple_repeat Simple_repeat 2 35 0 8 912 432 0 0 0 chr4 42899695 42899743 -112730377 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 8 912 291 314 137 93 chr4 42900211 42900275 -112729845 + B4 SINE B4 80 156 -136 8 912 351 0 0 0 chr4 42900275 42900314 -112729806 + (CAGC)n Simple_repeat Simple_repeat 3 41 0 8 912 291 314 137 93 chr4 42900314 42900453 -112729667 + B4 SINE B4 157 291 -1 8 912 234 0 0 0 chr4 42900835 42900861 -112729259 + (TGG)n Simple_repeat Simple_repeat 3 28 0 8 912 396 82 0 0 chr4 42900857 42900918 -112729202 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 8 912 1211 43 0 0 chr4 42900920 42901061 -112729059 - B1_Mus1 SINE Alu -6 142 2 8 912 21 0 0 0 chr4 42901071 42901092 -112729028 + AT_rich Low_complexity Low_complexity 1 21 0 8 912 2748 211 50 28 chr4 42901683 42902447 -112727673 + RMER1B Other Other 135 1066 0 8 912 880 186 62 0 chr4 42902470 42902647 -112727473 + B3 SINE B2 29 216 0 8 912 228 299 0 15 chr4 42902789 42902857 -112727263 - MER58B DNA MER1_type 0 341 275 8 912 227 209 0 0 chr4 42902862 42902905 -112727215 - MER58B DNA MER1_type -25 316 275 8 912 253 238 0 0 chr4 42903192 42903255 -112726865 - HAL1 LINE L1 -2300 207 145 8 912 735 66 0 0 chr4 42903365 42903471 -112726649 + (TG)n Simple_repeat Simple_repeat 2 107 0 8 912 1626 206 69 41 chr4 42906489 42906853 -112723267 - ORR1D1 LTR MaLR 0 374 1 8 912 347 270 52 0 chr4 42907071 42907186 -112722934 + L2a LINE L2 3290 3410 -16 8 912 603 259 77 88 chr4 42907256 42907438 -112722682 - B3A SINE B2 -18 180 1 8 912 1010 197 4 88 chr4 42907546 42907774 -112722346 - B3 SINE B2 -6 210 2 8 912 300 27 0 0 chr4 42908640 42908677 -112721443 + (TTG)n Simple_repeat Simple_repeat 3 39 0 8 912 738 180 0 8 chr4 42908679 42908802 -112721318 - B1_Mur2 SINE Alu -18 131 10 8 912 422 223 65 37 chr4 42908706 42908813 -112721307 - B4 SINE B4 -98 194 85 8 912 528 16 0 0 chr4 42909538 42909599 -112720521 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 912 210 241 0 0 chr4 42909600 42909745 -112720375 + GA-rich Low_complexity Low_complexity 1 145 0 8 912 361 248 0 0 chr4 42909745 42909858 -112720262 + (TG)n Simple_repeat Simple_repeat 2 114 0 8 912 435 19 0 0 chr4 42909862 42909914 -112720206 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 912 515 311 78 34 chr4 42910564 42910833 -112719287 - HERV16-int LTR ERVL -2706 2290 2010 8 912 268 289 118 12 chr4 42911006 42911167 -112718953 - HERV16-int LTR ERVL -3604 1392 1215 8 912 258 227 0 0 chr4 42911371 42911446 -112718674 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 912 850 239 29 14 chr4 42911512 42911675 -112718445 + B3 SINE B2 1 167 -49 8 912 366 23 0 0 chr4 42911675 42911718 -112718402 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 912 850 239 29 14 chr4 42911718 42911762 -112718358 + B3 SINE B2 168 210 -6 8 912 280 304 126 34 chr4 42911862 42912131 -112717989 - HERV16-int LTR ERVL -4158 838 545 8 912 1603 135 258 9 chr4 42912729 42912837 -112717283 - RMER1B Other Other -1 1065 921 8 912 234 0 0 0 chr4 42912837 42912863 -112717257 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 912 1603 135 258 9 chr4 42912863 42913091 -112717029 - RMER1B Other Other -146 920 645 8 912 222 176 324 0 chr4 42913749 42913823 -112716297 + PB1D10 SINE Alu 17 114 -3 8 912 730 212 61 18 chr4 42914601 42914764 -112715356 - B3A SINE B2 -1 197 28 8 912 675 255 0 20 chr4 42915797 42915949 -112714171 + B3A SINE B2 1 149 -49 8 912 441 287 115 0 chr4 42916746 42916868 -112713252 + RSINE1 SINE B4 4 139 -26 8 912 198 71 0 0 chr4 42916877 42916905 -112713215 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 912 423 0 0 0 chr4 42916905 42916951 -112713169 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 912 1107 237 0 9 chr4 42916961 42917178 -112712942 + B3 SINE B2 2 216 0 8 912 424 246 64 50 chr4 42917249 42917492 -112712628 + L1M4 LINE L1 3033 3263 -2883 8 912 797 251 40 70 chr4 42917501 42917801 -112712319 + B4A SINE B4 2 292 0 8 912 266 324 0 10 chr4 42917935 42918038 -112712082 + PB1 SINE Alu 26 127 0 8 912 249 314 47 0 chr4 42918427 42918513 -112711607 - PB1 SINE Alu -12 115 26 8 912 485 320 23 0 chr4 42918600 42918772 -112711348 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 912 498 289 111 41 chr4 42918819 42919090 -112711030 - B4A SINE B4 -1 291 2 8 912 364 201 65 29 chr4 42919107 42919245 -112710875 - L1M4 LINE L1 -2874 3272 3130 8 912 315 0 0 0 chr4 42919589 42919624 -112710496 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 912 1215 48 0 0 chr4 42919624 42919763 -112710357 - B1_Mm SINE Alu -7 140 2 8 912 2907 92 26 0 chr4 42919795 42920185 -112709935 - MTB LTR MaLR 0 400 1 8 912 679 142 7 7 chr4 42920270 42920419 -112709701 + (TG)n Simple_repeat Simple_repeat 1 149 0 8 912 455 140 2 0 chr4 42920454 42920520 -112709600 + Lx8 LINE L1 6425 6483 -990 8 912 215 364 0 29 chr4 42920611 42920679 -112709441 + ID4_ SINE ID 2 67 -16 8 912 23160 129 22 39 chr4 42920698 42924433 -112705687 + Lx5 LINE L1 1762 5458 -419 8 912 4017 67 62 2 chr4 42924433 42924953 -112705167 + L1_Mus1 LINE L1 6017 6567 0 8 912 23160 129 22 39 chr4 42924953 42924965 -112705155 + Lx5 LINE L1 5459 5459 -418 8 912 252 0 0 0 chr4 42924965 42924993 -112705127 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 912 23160 129 22 39 chr4 42924993 42925277 -112704843 + Lx5 LINE L1 5459 5725 -152 8 912 1050 207 117 21 chr4 42925405 42925686 -112704434 + Lx5 LINE L1 6027 6334 -716 8 912 324 290 11 11 chr4 42925699 42925793 -112704327 - MER21B LTR ERV1 -493 370 277 8 912 257 261 0 28 chr4 42926035 42926106 -112704014 + ID4_ SINE ID 2 70 -13 8 912 449 301 69 72 chr4 42926266 42926584 -112703536 - MLT1A1 LTR MaLR -2 363 34 8 912 289 290 0 0 chr4 42927029 42927098 -112703022 + L1MA4 LINE L1 5685 5753 -547 8 912 2012 124 45 98 chr4 42927098 42927391 -112702729 - MTC LTR MaLR -8 413 105 8 912 1479 58 10 10 chr4 42927391 42927584 -112702536 + B2_Mm2 SINE B2 2 194 -1 8 912 2012 124 45 98 chr4 42927584 42927624 -112702496 - MTC LTR MaLR -317 104 100 8 912 1466 22 0 6 chr4 42927624 42927803 -112702317 + (GAA)n Simple_repeat Simple_repeat 3 180 0 8 912 2012 124 45 98 chr4 42927803 42927887 -112702233 - MTC LTR MaLR -322 99 18 8 912 410 250 57 56 chr4 42927911 42928090 -112702030 + L1MA4 LINE L1 5749 5938 -362 8 912 213 297 86 21 chr4 42928252 42928274 -112701846 - B1F1 SINE Alu -42 107 9 8 912 311 200 28 14 chr4 42928274 42928345 -112701775 - ID_B1 SINE B4 -63 161 90 8 912 301 299 74 9 chr4 42928876 42928984 -112701136 + MIR SINE MIR 17 131 -137 8 912 424 244 0 8 chr4 42929018 42929138 -112700982 + B1F SINE Alu 9 127 -22 8 912 28 116 0 0 chr4 42929947 42930094 -112700026 + GC_rich Low_complexity Low_complexity 1 147 0 8 912 209 294 148 16 chr4 42931071 42931199 -112698921 - MIRb SINE MIR -33 235 91 9 912 374 185 49 12 chr4 42932036 42932118 -112698002 + PB1D7 SINE Alu 36 120 0 9 912 379 276 93 7 chr4 42932142 42932251 -112697869 + B1F2 SINE Alu 3 114 -6 9 912 621 0 0 0 chr4 42932251 42932320 -112697800 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 912 246 265 97 10 chr4 42932446 42932549 -112697571 - LTR89 LTR ERVL? -157 722 611 9 912 395 125 14 0 chr4 42932555 42932627 -112697493 + (TA)n Simple_repeat Simple_repeat 1 73 0 9 912 459 0 0 0 chr4 42932727 42932778 -112697342 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 912 804 134 0 8 chr4 42932866 42932994 -112697126 - B1_Mus1 SINE Alu 0 148 22 9 912 315 104 0 0 chr4 42933017 42933065 -112697055 + (ATG)n Simple_repeat Simple_repeat 1 48 0 9 912 318 287 18 44 chr4 42934617 42934730 -112695390 + L2c LINE L2 3032 3141 -246 9 912 405 0 0 0 chr4 42934859 42934904 -112695216 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 912 1017 209 5 5 chr4 42935653 42935860 -112694260 + URR1A DNA MER1_type 20 226 0 9 912 284 275 25 0 chr4 42936449 42936529 -112693591 - ID4_ SINE ID 0 83 2 9 912 198 0 0 0 chr4 42936548 42936570 -112693550 + (AGTTG)n Simple_repeat Simple_repeat 1 22 0 9 912 262 289 110 11 chr4 42936571 42936662 -112693458 - B1F SINE Alu -35 114 15 9 912 476 236 40 24 chr4 42936811 42936831 -112693289 - B1_Mur3 SINE Alu -21 128 108 9 912 432 0 0 0 chr4 42936831 42936879 -112693241 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 912 511 218 12 2 chr4 42936879 42936984 -112693136 - B1F1 SINE Alu -42 107 1 9 912 414 239 128 0 chr4 42939072 42939181 -112690939 + B1_Mur3 SINE Alu 5 127 -22 9 912 211 286 0 35 chr4 42939257 42939315 -112690805 + polypyrimidine Low_complexity Low_complexity 1 56 0 9 912 610 242 39 44 chr4 42939325 42939528 -112690592 - MLT1D LTR MaLR -49 456 255 9 912 891 131 0 0 chr4 42939763 42939893 -112690227 + B1_Mus1 SINE Alu 3 132 -16 9 912 396 0 0 0 chr4 42939893 42939937 -112690183 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 912 451 274 48 9 chr4 42939966 42940149 -112689971 + L1M2 LINE L1 5320 5504 -796 9 912 490 206 93 22 chr4 42940293 42940432 -112689688 + B1F1 SINE Alu 1 149 0 9 912 250 132 0 0 chr4 42940524 42940562 -112689558 - B2_Mm2 SINE B2 -157 38 1 9 912 1055 92 7 0 chr4 42940742 42940895 -112689225 + B2_Mm2 SINE B2 1 154 -41 9 912 600 53 0 0 chr4 42940897 42940973 -112689147 + (TA)n Simple_repeat Simple_repeat 2 77 0 9 912 328 243 0 0 chr4 42940993 42941063 -112689057 + ID4_ SINE ID 2 71 -12 9 912 1019 209 29 0 chr4 42941160 42941370 -112688750 + B3 SINE B2 1 216 0 9 912 1091 196 148 27 chr4 42941777 42942107 -112688013 - ORR1D1 LTR MaLR -4 370 1 9 912 375 23 0 0 chr4 42942306 42942350 -112687770 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 9 912 254 233 186 0 chr4 42942362 42942448 -112687672 - Lx4B LINE L1 -46 7012 6911 9 912 349 286 25 8 chr4 42942464 42942584 -112687536 - B3A SINE B2 -35 163 42 9 912 1176 192 9 9 chr4 42942664 42942880 -112687240 + B3 SINE B2 1 216 0 9 912 832 179 14 14 chr4 42943101 42943243 -112686877 + B1_Mur2 SINE Alu 2 143 -6 9 912 1002 39 0 0 chr4 42943437 42943564 -112686556 + (TG)n Simple_repeat Simple_repeat 1 127 0 9 912 844 241 78 22 chr4 42943583 42943851 -112686269 - B4 SINE B4 -7 285 3 9 912 434 254 12 31 chr4 42943856 42944008 -112686112 - PB1D7 SINE Alu 0 149 2 9 912 373 281 73 145 chr4 42943857 42944036 -112686084 - ID_B1 SINE B4 0 224 59 9 912 554 301 53 18 chr4 42944778 42945062 -112685058 - L1MB8 LINE L1 -6 6172 5879 9 912 455 243 0 6 chr4 42945969 42946143 -112683977 + (TG)n Simple_repeat Simple_repeat 1 173 0 9 912 238 357 60 0 chr4 42946261 42946345 -112683775 - MIRc SINE MIR -60 208 120 9 912 287 288 14 0 chr4 42947024 42947097 -112683023 + ID4_ SINE ID 10 83 0 9 912 249 221 171 23 chr4 42947844 42947932 -112682188 - MER20 DNA MER1_type -115 104 4 9 912 255 125 0 0 chr4 42948554 42948594 -112681526 + (CACG)n Simple_repeat Simple_repeat 2 41 0 9 912 235 348 62 25 chr4 42949271 42949433 -112680687 + L2 LINE L2 2378 2545 -874 9 912 230 252 0 76 chr4 42949477 42949649 -112680471 + C-rich Low_complexity Low_complexity 2 160 0 9 912 885 184 0 13 chr4 42954172 42954321 -112675799 + B1_Mur1 SINE Alu 1 147 -2 9 912 603 252 83 7 chr4 42957452 42957596 -112672524 + RSINE1 SINE B4 3 157 -8 9 912 206 30 0 83 chr4 42958394 42958430 -112671690 + (A)n Simple_repeat Simple_repeat 1 33 0 9 912 182 303 12 73 chr4 42960400 42960482 -112669638 - MIR SINE MIR -59 203 127 9 912 205 288 0 0 chr4 42961450 42961509 -112668611 + C-rich Low_complexity Low_complexity 1 59 0 9 912 204 158 0 0 chr4 42963038 42963076 -112667044 + (TCGGG)n Simple_repeat Simple_repeat 1 38 0 9 912 223 208 42 0 chr4 42964271 42964319 -112665801 + GA-rich Low_complexity Low_complexity 1 50 0 9 912 196 276 88 44 chr4 42965165 42965256 -112664864 - L3 LINE CR1 -3641 848 754 9 912 517 226 81 0 chr4 42965808 42965932 -112664188 - MIR3 SINE MIR 0 208 75 9 912 270 0 0 0 chr4 42967980 42968010 -112662110 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 9 912 346 221 25 25 chr4 42968069 42968148 -112661972 + ID SINE ID 4 82 -142 9 912 187 93 47 0 chr4 42968534 42968577 -112661543 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 9 912 1255 48 0 0 chr4 42968578 42968725 -112661395 - B1_Mus2 SINE Alu 0 147 1 9 912 511 244 20 39 chr4 42969052 42969194 -112660926 - PB1D10 SINE Alu -14 135 6 9 912 294 167 0 0 chr4 42969999 42970059 -112660061 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 912 195 42 0 0 chr4 42971403 42971427 -112658693 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 9 912 684 183 152 12 chr4 42971996 42972167 -112657953 + B3A SINE B2 4 198 0 9 912 206 286 0 20 chr4 42972987 42973037 -112657083 + G-rich Low_complexity Low_complexity 1 49 0 9 912 1224 41 7 14 chr4 42973588 42973736 -112656384 - B1_Mus2 SINE Alu 0 147 1 9 912 281 284 0 51 chr4 42973771 42973849 -112656271 - ID4 SINE ID -9 74 1 9 912 589 204 18 9 chr4 42973858 42973972 -112656148 - B1_Mur2 SINE Alu 0 149 35 9 912 963 128 256 0 chr4 42974035 42974207 -112655913 - B3 SINE B2 0 216 1 9 912 902 231 25 10 chr4 42974528 42974729 -112655391 + B3 SINE B2 1 204 -12 9 912 1150 82 14 0 chr4 42974733 42974879 -112655241 + B1_Mur4 SINE Alu 2 149 -1 9 912 324 242 140 29 chr4 42974909 42975287 -112654833 + L1MEc LINE L1 1596 2003 -5331 9 912 966 151 0 7 chr4 42975692 42975839 -112654281 + B1_Mur4 SINE Alu 2 147 -3 9 912 342 276 117 6 chr4 42975840 42976011 -112654109 + L1MEc LINE L1 2381 2570 -4517 9 912 706 187 30 0 chr4 42976031 42976165 -112653955 + B3 SINE B2 74 211 -5 9 912 273 303 13 0 chr4 42976265 42976341 -112653779 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 912 860 257 103 44 chr4 42976382 42976424 -112653696 + MTE-int LTR MaLR 580 622 -958 9 912 1102 96 87 38 chr4 42976424 42976609 -112653511 + B2_Mm2 SINE B2 2 195 0 9 912 860 257 103 44 chr4 42976609 42976818 -112653302 + MTE-int LTR MaLR 623 846 -734 9 912 677 218 16 0 chr4 42976922 42977046 -112653074 + RSINE1 SINE B4 3 128 -37 9 912 304 317 122 0 chr4 42978187 42978310 -112651810 - MIRc SINE MIR -25 243 106 9 912 198 214 71 0 chr4 42978281 42978323 -112651797 - MIRm SINE MIR -139 137 93 9 912 636 183 90 118 chr4 42979021 42979232 -112650888 + B3 SINE B2 1 205 -11 9 912 296 314 0 0 chr4 42979928 42979998 -112650122 + PB1 SINE Alu 21 90 -37 9 912 432 0 0 0 chr4 42980004 42980052 -112650068 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 912 385 282 87 0 chr4 42980059 42980162 -112649958 + B1_Mur2 SINE Alu 32 143 -6 9 912 561 256 47 0 chr4 42980177 42980306 -112649814 + B1F SINE Alu 1 135 -14 9 912 543 294 13 31 chr4 42980421 42980621 -112649499 + L1_Rod LINE L1 5523 5789 -511 9 912 2270 158 5 67 chr4 42980621 42981054 -112649066 + MTB_Mm LTR MaLR 2 407 0 9 912 543 303 7 39 chr4 42981054 42981124 -112648996 + L1_Rod LINE L1 5722 5819 -481 9 912 2108 182 45 40 chr4 42981207 42981400 -112648720 + MTD LTR MaLR 1 207 -212 9 912 1172 51 0 0 chr4 42981400 42981538 -112648582 + B1_Mm SINE Alu 1 138 -9 9 912 194 0 39 0 chr4 42981538 42981564 -112648556 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 912 2108 182 45 40 chr4 42981564 42981770 -112648350 + MTD LTR MaLR 208 402 -17 9 912 320 0 0 24 chr4 42982111 42982152 -112647968 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 912 191 211 158 0 chr4 42982154 42982211 -112647909 - MIR SINE MIR -23 239 174 9 912 809 190 35 21 chr4 42982222 42982367 -112647753 + B1_Mur3 SINE Alu 2 148 -1 9 912 1166 69 7 0 chr4 42982471 42982616 -112647504 + B1_Mus1 SINE Alu 2 147 -1 9 912 291 250 101 22 chr4 42983304 42983403 -112646717 + RMER17B LTR ERVK 314 423 -535 9 912 1236 48 7 0 chr4 42983403 42983549 -112646571 - B1_Mus2 SINE Alu 0 147 1 9 912 291 250 101 22 chr4 42983549 42983588 -112646532 + RMER17B LTR ERVK 424 462 -496 9 912 1324 97 11 0 chr4 42987236 42987412 -112642708 + B2_Mm1t SINE B2 2 179 -14 9 912 211 125 0 0 chr4 42987461 42987493 -112642627 + B2_Mm2 SINE B2 70 101 -94 9 912 24 0 0 0 chr4 42987515 42987539 -112642581 + AT_rich Low_complexity Low_complexity 1 24 0 9 912 844 148 129 52 chr4 42987591 42987784 -112642336 + URR1B DNA MER1_type 3 210 -15 9 912 261 122 3 0 chr4 42988146 42988188 -112641932 - BC1_Mm scRNA scRNA -39 44 2 1 912 390 286 72 39 chr4 42988297 42988450 -112641670 - MLT1D LTR MaLR -88 417 260 1 912 253 337 74 94 chr4 42988476 42988679 -112641441 - ID_B1 SINE B4 0 224 26 1 912 314 354 35 9 chr4 42988685 42988718 -112641402 + B4 SINE B4 51 86 -206 1 912 519 216 10 0 chr4 42988718 42988815 -112641305 + B1_Mur3 SINE Alu 1 98 -51 1 912 471 58 13 122 chr4 42988818 42988913 -112641207 + B2_Mm2 SINE B2 95 188 -5 1 912 424 191 220 25 chr4 42989423 42989541 -112640579 - B1_Mur3 SINE Alu -7 142 2 1 912 253 241 127 0 chr4 42989541 42989620 -112640500 - 4.5SRNA scRNA scRNA -2 92 4 1 912 1238 118 16 5 chr4 42989638 42989826 -112640294 - B2_Mm2 SINE B2 -5 190 1 1 912 1178 57 0 0 chr4 42989840 42989981 -112640139 - B1_Mus1 SINE Alu -6 142 2 1 912 456 183 109 34 chr4 42990500 42990619 -112639501 + B1_Mus1 SINE Alu 21 148 0 1 912 1336 70 53 16 chr4 42990622 42990810 -112639310 + B2_Mm2 SINE B2 1 195 0 1 912 224 186 17 17 chr4 42990811 42990871 -112639249 + A-rich Low_complexity Low_complexity 1 60 0 1 912 836 147 47 68 chr4 42991029 42991219 -112638901 + B2_Mm2 SINE B2 2 187 -8 1 912 1148 86 0 0 chr4 42991228 42991367 -112638753 + B1_Mus1 SINE Alu 2 140 -8 1 912 267 113 42 0 chr4 42991414 42991485 -112638635 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 912 387 276 22 22 chr4 42991509 42991598 -112638522 + PB1D10 SINE Alu 2 90 -27 1 14 699 240 57 11 chr4 42991598 42991775 -112638345 + B3 SINE B2 17 201 -15 1 913 1145 68 0 20 chr4 42991797 42991946 -112638174 - B1_Mus2 SINE Alu 0 147 2 1 913 343 198 222 30 chr4 42991964 42992063 -112638057 - RSINE1 SINE B4 -46 119 2 1 913 402 218 53 22 chr4 42992101 42992204 -112637916 + B1_Mur2 SINE Alu 1 142 -7 1 913 760 199 23 0 chr4 42992365 42992496 -112637624 + B1_Mus1 SINE Alu 2 135 -13 1 913 354 123 0 0 chr4 42992502 42992559 -112637561 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 1 913 1277 41 0 0 chr4 42994428 42994575 -112635545 - B1_Mus2 SINE Alu 0 147 1 1 913 612 196 174 156 chr4 42994762 42994802 -112635318 + B3 SINE B2 1 31 -185 1 913 1216 54 0 13 chr4 42994802 42994952 -112635168 + B1_Mus1 SINE Alu 1 148 0 1 913 612 196 174 156 chr4 42994952 42995123 -112634997 + B3 SINE B2 32 216 0 1 913 448 90 7 2 chr4 42996072 42996147 -112633973 - B1_Mus1 SINE Alu -71 78 2 1 913 962 67 82 0 chr4 42996585 42996720 -112633400 - B1_Mm SINE Alu -1 146 1 1 913 1316 172 306 12 chr4 42996733 42997057 -112633063 + MTC LTR MaLR 3 421 0 1 913 293 241 41 0 chr4 42997854 42997939 -112632181 - PB1D10 SINE Alu -13 107 16 1 913 769 206 131 16 chr4 42998279 42998462 -112631658 + URR1A DNA MER1_type 15 218 -8 1 913 819 159 36 7 chr4 42998628 42998767 -112631353 + B1_Mur4 SINE Alu 8 150 0 1 913 609 256 30 15 chr4 42999178 42999309 -112630811 + RSINE1 SINE B4 2 134 -31 1 913 1284 84 51 0 chr4 42999327 42999505 -112630615 - B2_Mm2 SINE B2 -7 188 2 1 913 794 172 8 8 chr4 42999871 43000000 -112630120 + B1_Mur3 SINE Alu 1 129 -20 1 913 195 42 0 0 chr4 43000009 43000033 -112630087 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 913 1925 181 116 77 chr4 43000141 43000183 -112629937 + RLTR12B LTR ERVK 1 32 -496 2 913 1503 73 0 5 chr4 43000183 43000375 -112629745 + B2_Mm2 SINE B2 1 191 -4 3 913 1925 181 116 77 chr4 43000375 43000840 -112629280 + RLTR12B LTR ERVK 33 528 0 2 913 642 294 165 0 chr4 43000951 43001199 -112628921 + B4 SINE B4 1 289 -3 4 913 720 278 87 5 chr4 43001248 43001443 -112628677 + B3 SINE B2 3 213 -3 5 913 701 229 165 16 chr4 43001773 43001955 -112628165 + B3 SINE B2 5 213 -3 6 913 394 229 83 0 chr4 43002077 43002173 -112627947 + B1_Mm SINE Alu 1 104 -43 7 913 310 154 123 0 chr4 43002545 43002610 -112627510 - URR1B DNA MER1_type -43 182 110 8 913 1094 96 78 0 chr4 43002714 43002740 -112627380 - B2_Mm2 SINE B2 -2 193 167 9 913 534 16 0 0 chr4 43002740 43002803 -112627317 + (TATG)n Simple_repeat Simple_repeat 4 66 0 1 913 1094 96 78 0 chr4 43002803 43002942 -112627178 - B2_Mm2 SINE B2 -29 166 16 9 913 618 197 0 33 chr4 43003002 43003123 -112626997 - B1_Mus2 SINE Alu -13 134 18 1 913 433 246 119 0 chr4 43003904 43004022 -112626098 + B1F SINE Alu 18 149 0 1 913 559 284 125 53 chr4 43004215 43004479 -112625641 + RMER13A LTR ERVK 21 303 -557 1 913 225 274 158 108 chr4 43004594 43004733 -112625387 + RMER20B LTR ERVK 459 604 -23 1 913 852 212 173 0 chr4 43004955 43005134 -112624986 + B3 SINE B2 1 210 -6 1 913 667 131 18 18 chr4 43005199 43005308 -112624812 + PB1D9 SINE Alu 12 120 0 1 913 427 105 0 0 chr4 43005343 43005400 -112624720 - B3 SINE B2 -133 83 27 1 913 1575 41 0 15 chr4 43005402 43005598 -112624522 - B2_Mm1t SINE B2 0 193 1 1 913 297 346 0 0 chr4 43005652 43005730 -112624390 - B1F1 SINE Alu -69 80 3 1 913 487 217 0 0 chr4 43005895 43005978 -112624142 + ID4_ SINE ID 1 83 0 2 913 1160 52 0 0 chr4 43007181 43007317 -112622803 + B1_Mus1 SINE Alu 2 137 -11 2 913 564 211 28 0 chr4 43007564 43007673 -112622447 - PB1D9 SINE Alu 0 120 9 2 913 291 246 0 76 chr4 43007614 43007693 -112622427 - B4A SINE B4 -140 152 80 2 913 1459 74 26 0 chr4 43007705 43007894 -112622226 - B2_Mm2 SINE B2 -1 194 1 2 913 1244 101 20 36 chr4 43008124 43008319 -112621801 + B2_Mm2 SINE B2 2 193 -2 2 913 213 39 0 0 chr4 43008538 43008564 -112621556 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 913 1255 48 0 0 chr4 43008568 43008714 -112621406 - B1_Mus1 SINE Alu -2 146 1 2 913 386 328 31 8 chr4 43009520 43009649 -112620471 + MIR SINE MIR 21 152 -110 2 913 1331 92 38 0 chr4 43009753 43009937 -112620183 - B2_Mm2 SINE B2 -3 192 2 2 913 329 212 0 29 chr4 43010156 43010224 -112619896 + MT2B LTR ERVL 192 257 -344 3 913 774 47 0 28 chr4 43010163 43010272 -112619848 + B1_Mm SINE Alu 42 147 0 3 913 376 146 0 0 chr4 43010289 43010344 -112619776 - PB1D9 SINE Alu -45 75 21 3 913 290 170 81 111 chr4 43010340 43010439 -112619681 + B1_Mur4 SINE Alu 54 149 -1 3 913 401 254 207 17 chr4 43010745 43010861 -112619259 - B1F2 SINE Alu 0 149 12 3 913 400 326 22 15 chr4 43011401 43011538 -112618582 + ID_B1 SINE B4 86 223 -1 3 913 908 164 0 0 chr4 43011542 43011688 -112618432 + B1_Mur4 SINE Alu 5 150 0 3 913 225 227 37 144 chr4 43011743 43011869 -112618251 - PB1D9 SINE Alu 0 120 11 3 913 232 310 0 74 chr4 43013768 43013876 -112616244 + ID_B1 SINE B4 70 169 -55 3 913 232 323 48 57 chr4 43013786 43013891 -112616229 + PB1D10 SINE Alu 5 108 -9 3 913 514 197 41 136 chr4 43013932 43014079 -112616041 + B1_Mur1 SINE Alu 9 141 -8 4 913 296 344 31 0 chr4 43014112 43014208 -112615912 + PB1D10 SINE Alu 1 99 -18 4 913 258 56 0 0 chr4 43014212 43014248 -112615872 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 913 287 289 72 32 chr4 43014709 43014729 -112615391 - B4 SINE B4 -73 219 200 4 913 1247 41 0 20 chr4 43014729 43014879 -112615241 + B1_Mus2 SINE Alu 1 147 0 4 913 504 182 39 29 chr4 43014881 43014983 -112615137 - PB1D9 SINE Alu -13 107 5 4 913 234 235 68 135 chr4 43014902 43015035 -112615085 - MT2B LTR ERVL -360 241 118 4 913 458 230 110 0 chr4 43016961 43017061 -112613059 - B1_Mur1 SINE Alu -26 123 13 4 913 441 287 49 42 chr4 43017167 43017309 -112612811 + ID_B1 SINE B4 82 224 0 4 913 605 147 9 0 chr4 43017309 43017418 -112612702 + GA-rich Low_complexity Low_complexity 2 111 0 4 913 404 244 22 11 chr4 43018462 43018553 -112611567 + B4A SINE B4 1 92 -200 5 913 944 134 0 7 chr4 43018607 43018750 -112611370 - B1_Mus1 SINE Alu -1 147 6 5 913 846 139 40 34 chr4 43018797 43018946 -112611174 - B2_Mm2 SINE B2 -44 151 2 5 913 645 255 16 40 chr4 43018946 43019142 -112610978 + B4A SINE B4 95 277 -15 5 913 396 0 0 0 chr4 43019179 43019223 -112610897 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 913 387 0 0 0 chr4 43020701 43020744 -112609376 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 913 412 315 0 95 chr4 43020806 43020964 -112609156 + ID_B1 SINE B4 81 223 -1 5 913 424 176 78 61 chr4 43020980 43021095 -112609025 + PB1D7 SINE Alu 3 119 -1 5 913 553 224 34 17 chr4 43021101 43021219 -112608901 + PB1D9 SINE Alu 1 120 0 5 913 1127 198 14 24 chr4 43021247 43021454 -112608666 + B3 SINE B2 3 207 -9 5 913 238 167 0 0 chr4 43021498 43021534 -112608586 + ID SINE ID 24 59 -165 5 913 207 69 0 0 chr4 43021793 43021822 -112608298 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 913 486 0 0 0 chr4 43022334 43022388 -112607732 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 913 978 88 81 0 chr4 43023736 43023872 -112606248 + B1_Mm SINE Alu 1 147 0 6 913 347 276 64 96 chr4 43024000 43024188 -112605932 - B3A SINE B2 -15 183 2 6 913 564 228 110 0 chr4 43024195 43024322 -112605798 - B1F1 SINE Alu -7 142 2 6 913 261 0 0 0 chr4 43024336 43024365 -112605755 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 913 818 182 7 0 chr4 43024423 43024566 -112605554 - B1_Mur3 SINE Alu -1 148 5 6 913 884 154 42 24 chr4 43024592 43024758 -112605362 - B2_Mm2 SINE B2 0 195 27 6 913 1501 68 16 0 chr4 43024762 43024953 -112605167 - B2_Mm2 SINE B2 0 195 2 6 913 571 288 0 0 chr4 43025002 43025127 -112604993 + B3 SINE B2 3 127 -89 6 913 276 280 161 45 chr4 43025130 43025242 -112604878 + ID_B1 SINE B4 84 208 -16 7 913 224 242 198 0 chr4 43025161 43025252 -112604868 + PB1D10 SINE Alu 7 115 -2 7 913 1105 44 195 0 chr4 43025280 43025439 -112604681 + B2_Mm2 SINE B2 1 190 -5 7 913 1245 61 0 0 chr4 43025480 43025627 -112604493 + B1_Mus2 SINE Alu 1 147 0 7 913 785 151 62 41 chr4 43025699 43025844 -112604276 - B1_Mur2 SINE Alu 0 149 2 7 913 457 263 26 0 chr4 43026039 43026153 -112603967 + ID_B1 SINE B4 88 204 -20 7 913 546 286 130 0 chr4 43026484 43026645 -112603475 - RMER30 DNA MER1_type -19 183 2 7 913 321 299 0 0 chr4 43026726 43026803 -112603317 + B1_Mur2 SINE Alu 26 102 -47 7 913 247 279 0 60 chr4 43026744 43026828 -112603292 + MT2B LTR ERVL 201 279 -322 7 913 1315 149 13 18 chr4 43026903 43027128 -112602992 + URR1B DNA MER1_type 1 224 -1 7 913 308 320 32 16 chr4 43027297 43027421 -112602699 - B1F2 SINE Alu 0 149 24 8 913 774 159 109 29 chr4 43027424 43027599 -112602521 - B2_Mm2 SINE B2 -6 189 1 8 913 325 349 19 0 chr4 43027650 43027756 -112602364 + PB1D10 SINE Alu 10 117 0 8 913 298 300 135 23 chr4 43027780 43027913 -112602207 - B1_Mur1 SINE Alu 0 149 2 8 913 1251 54 0 0 chr4 43027927 43028074 -112602046 - B1_Mus2 SINE Alu 0 147 1 8 913 218 276 51 26 chr4 43028203 43028281 -112601839 + B1F SINE Alu 9 88 -61 8 913 1134 131 16 32 chr4 43028430 43028619 -112601501 - B2_Mm2 SINE B2 -1 194 9 8 913 235 298 189 8 chr4 43028623 43028745 -112601375 - B1F2 SINE Alu -5 144 1 8 913 414 39 0 0 chr4 43028865 43028917 -112601203 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 913 773 264 12 0 chr4 43028917 43029080 -112601040 - B3 SINE B2 -51 165 1 8 913 283 125 15 59 chr4 43029090 43029120 -112601000 + T-rich Low_complexity Low_complexity 39 68 0 9 913 1000 103 13 33 chr4 43029120 43029270 -112600850 - B1_Mus1 SINE Alu 0 148 2 9 913 283 125 15 59 chr4 43029270 43029307 -112600813 + T-rich Low_complexity Low_complexity 4 38 0 9 913 1343 63 63 0 chr4 43029312 43029487 -112600633 - B2_Mm1a SINE B2 -6 187 2 9 913 479 211 175 0 chr4 43029489 43029603 -112600517 - ID_B1 SINE B4 0 224 91 9 913 841 183 14 7 chr4 43029826 43029969 -112600151 + B1_Mur1 SINE Alu 1 144 -5 9 913 1251 48 0 0 chr4 43029973 43030120 -112600000 + B1_Mus1 SINE Alu 2 148 0 9 913 207 0 0 0 chr4 43030120 43030143 -112599977 + (A)n Simple_repeat Simple_repeat 1 23 0 9 913 219 278 73 18 chr4 43031185 43031295 -112598825 + MIRc SINE MIR 5 120 -148 9 913 700 35 12 0 chr4 43031367 43031453 -112598667 - B1_Mus2 SINE Alu 0 147 61 9 913 824 117 0 8 chr4 43031447 43031568 -112598552 - B2_Mm2 SINE B2 -61 134 15 1 913 1194 55 7 0 chr4 43031713 43031859 -112598261 + B1_Mus2 SINE Alu 1 147 0 1 913 288 170 0 0 chr4 43031861 43031914 -112598206 + A-rich Low_complexity Low_complexity 1 53 0 1 913 256 298 45 38 chr4 43035164 43035300 -112594820 + PB1D9 SINE Alu 1 131 -17 1 913 875 108 71 7 chr4 43035856 43035971 -112594149 + B1_Mur4 SINE Alu 2 118 -32 1 913 315 0 0 0 chr4 43035971 43036006 -112594114 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 913 875 108 71 7 chr4 43036006 43036030 -112594090 + B1_Mur4 SINE Alu 119 148 -2 1 913 539 188 0 59 chr4 43036030 43036124 -112593996 + B1_Mur1 SINE Alu 53 141 -8 1 913 210 37 0 0 chr4 43036772 43036799 -112593321 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 913 686 274 7 0 chr4 43036812 43036958 -112593162 + RSINE1 SINE B4 8 154 -11 1 913 420 252 181 18 chr4 43036958 43037124 -112592996 - B4 SINE B4 0 292 100 1 913 525 165 27 27 chr4 43037024 43037136 -112592984 - PB1D9 SINE Alu -8 112 5 1 913 312 278 7 131 chr4 43037136 43037159 -112592961 - MT2B2 LTR ERVL -311 239 147 1 913 509 169 0 0 chr4 43039020 43039097 -112591023 - B3A SINE B2 -121 77 1 1 913 234 242 0 114 chr4 43039097 43039159 -112590961 + MTE2a LTR MaLR 244 297 -82 1 913 1191 75 0 0 chr4 43039217 43039363 -112590757 + B1_Mus1 SINE Alu 1 146 -2 1 913 234 125 0 0 chr4 43039364 43039412 -112590708 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 913 212 161 0 0 chr4 43039463 43039494 -112590626 + B1_Mur4 SINE Alu 4 34 -116 1 913 633 303 9 66 chr4 43039490 43039702 -112590418 + ID_B1 SINE B4 17 216 -8 1 913 238 277 103 62 chr4 43039707 43039722 -112590398 + ID_B1 SINE B4 73 224 0 1 913 511 223 84 8 chr4 43039722 43039853 -112590267 + B1_Mur3 SINE Alu 9 149 0 1 913 325 244 35 11 chr4 43039875 43039962 -112590158 + PB1D9 SINE Alu 32 120 0 1 913 309 252 72 0 chr4 43040153 43040264 -112589856 + L2a LINE L2 3041 3159 -267 1 913 273 246 0 30 chr4 43040309 43040376 -112589744 - RSINE1 SINE B4 -97 68 4 1 913 275 253 70 10 chr4 43040470 43040566 -112589554 - PB1D10 SINE Alu -2 147 42 1 913 759 164 112 0 chr4 43041275 43041409 -112588711 - B1_Mur4 SINE Alu -1 149 1 1 913 270 213 21 11 chr4 43041414 43041509 -112588611 + CT-rich Low_complexity Low_complexity 1 96 0 1 913 367 268 54 0 chr4 43041509 43041621 -112588499 - PB1D9 SINE Alu -1 119 2 1 913 212 238 0 0 chr4 43044979 43045021 -112585099 + CT-rich Low_complexity Low_complexity 1 42 0 1 913 299 25 25 0 chr4 43045766 43045806 -112584314 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 913 35 0 0 0 chr4 43046047 43046082 -112584038 + AT_rich Low_complexity Low_complexity 1 35 0 1 913 1313 96 11 0 chr4 43048016 43048193 -112581927 + B2_Mm1t SINE B2 2 180 -13 1 913 320 233 200 0 chr4 43048243 43048333 -112581787 + ID_B1 SINE B4 116 223 -1 1 913 295 275 209 0 chr4 43048558 43048649 -112581471 + ID_B1 SINE B4 115 224 0 1 913 222 91 0 0 chr4 43048649 43048682 -112581438 + (A)n Simple_repeat Simple_repeat 1 33 0 1 913 204 67 0 0 chr4 43049889 43049919 -112580201 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 1 913 240 235 49 25 chr4 43050638 43050652 -112579468 + ORR1B1-int LTR MaLR 630 646 -863 1 913 905 96 3 1 chr4 43050652 43050795 -112579325 + B1_Mus1 SINE Alu 1 145 -4 1 913 274 191 130 87 chr4 43051150 43051242 -112578878 + PB1D10 SINE Alu 22 117 0 1 913 281 241 24 48 chr4 43051324 43051346 -112578774 + B4 SINE B4 69 149 -143 1 913 307 217 0 16 chr4 43051346 43051407 -112578713 + B1_Mur3 SINE Alu 5 64 -85 1 913 279 0 0 0 chr4 43051527 43051558 -112578562 + (A)n Simple_repeat Simple_repeat 1 31 0 1 913 21 36 0 0 chr4 43053092 43053120 -112577000 + GC_rich Low_complexity Low_complexity 1 28 0 1 913 1242 27 0 13 chr4 43054469 43054618 -112575502 - B1_Mus1 SINE Alu 0 148 2 1 913 540 168 10 40 chr4 43054904 43055003 -112575117 - PB1D10 SINE Alu 0 117 22 1 913 337 263 60 10 chr4 43055029 43055129 -112574991 - PB1D10 SINE Alu -1 116 12 1 913 280 279 43 85 chr4 43055154 43055248 -112574872 - ID_B1 SINE B4 -1 223 134 1 913 1183 56 0 0 chr4 43055264 43055408 -112574712 - B1_Mus1 SINE Alu 0 148 5 1 913 306 0 0 0 chr4 43055465 43055499 -112574621 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 913 253 118 0 56 chr4 43055557 43055611 -112574509 + B1_Mur4 SINE Alu 100 150 0 1 913 780 211 0 26 chr4 43055624 43055775 -112574345 + B1_Mur1 SINE Alu 2 148 -1 1 913 729 0 0 0 chr4 43055780 43055861 -112574259 + (TTC)n Simple_repeat Simple_repeat 1 81 0 1 913 348 246 65 151 chr4 43055874 43056013 -112574107 - RSINE1 SINE B4 -28 137 11 1 913 814 156 22 0 chr4 43056076 43056211 -112573909 - B1_Mus2 SINE Alu -1 146 9 1 913 345 222 33 107 chr4 43056109 43056230 -112573890 - MT2B LTR ERVL -337 264 153 1 913 279 157 0 0 chr4 43056247 43056298 -112573822 + CT-rich Low_complexity Low_complexity 1 51 0 1 913 202 348 78 11 chr4 43056298 43056388 -112573732 + L2c LINE L2 3272 3367 -20 1 913 198 0 0 0 chr4 43056484 43056506 -112573614 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 913 581 210 81 0 chr4 43056526 43056650 -112573470 + ID_B1 SINE B4 91 224 0 1 913 965 158 6 0 chr4 43059232 43059409 -112570711 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 1 913 330 302 0 0 chr4 43059409 43059515 -112570605 + CT-rich Low_complexity Low_complexity 2 107 0 1 913 236 120 20 0 chr4 43059517 43059567 -112570553 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1 913 301 234 63 24 chr4 43059945 43060072 -112570048 + L1M5 LINE L1 5190 5321 -825 1 913 534 16 0 0 chr4 43060408 43060471 -112569649 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 913 351 223 224 97 chr4 43060622 43060727 -112569393 + B3A SINE B2 6 132 -66 1 913 564 15 0 0 chr4 43060727 43060792 -112569328 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1 913 1051 116 51 23 chr4 43060792 43060969 -112569151 - B2_Mm2 SINE B2 -12 183 2 1 913 351 223 224 97 chr4 43060969 43060996 -112569124 + B3A SINE B2 133 155 -43 1 913 546 202 84 0 chr4 43061222 43061341 -112568779 + B1_Mur2 SINE Alu 1 129 -20 1 913 207 0 0 0 chr4 43061344 43061367 -112568753 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 913 643 252 7 13 chr4 43061372 43061521 -112568599 - RSINE1 SINE B4 -15 150 3 1 913 229 205 100 25 chr4 43061525 43061605 -112568515 - L1MC3 LINE L1 -12 7773 7688 1 913 252 0 0 0 chr4 43061605 43061633 -112568487 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 913 561 242 104 15 chr4 43061691 43061892 -112568228 - L1MC3 LINE L1 -88 7697 7479 1 913 330 267 16 24 chr4 43062023 43062146 -112567974 + ID_B1 SINE B4 103 224 0 1 913 306 267 32 32 chr4 43062153 43062246 -112567874 + B4A SINE B4 4 96 -196 1 913 1502 67 0 10 chr4 43062365 43062560 -112567560 - B2_Mm2 SINE B2 -1 194 2 1 913 474 49 0 0 chr4 43062598 43062659 -112567461 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 913 486 342 0 0 chr4 43062660 43062809 -112567311 - RSINE1 SINE B4 -15 150 2 1 913 220 180 140 0 chr4 43062953 43063001 -112567119 + B1_Mur4 SINE Alu 2 56 -94 1 913 788 215 77 0 chr4 43063001 43063210 -112566910 + RMER10A LTR ERVL 1 225 -217 1 913 519 123 0 12 chr4 43063297 43063379 -112566741 + B1_Mur3 SINE Alu 53 133 -16 1 913 213 224 0 20 chr4 43063382 43063432 -112566688 - PB1D10 SINE Alu -36 81 33 1 913 259 290 0 0 chr4 43063477 43063546 -112566574 - ID4 SINE ID -14 69 1 1 913 391 306 21 56 chr4 43063660 43063802 -112566318 + B1F1 SINE Alu 1 137 -12 1 913 483 18 0 0 chr4 43063939 43063995 -112566125 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 913 372 244 42 42 chr4 43064077 43064197 -112565923 - B3 SINE B2 -4 212 93 1 913 637 215 34 24 chr4 43064470 43064620 -112565500 + B3 SINE B2 4 149 -67 1 913 261 0 0 0 chr4 43064620 43064649 -112565471 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 913 430 260 25 95 chr4 43064649 43064698 -112565422 + B2_Mm2 SINE B2 139 189 -6 1 913 850 176 107 71 chr4 43065015 43065338 -112564782 - RMER10A LTR ERVL 0 442 1 1 913 402 301 35 0 chr4 43065770 43065883 -112564237 - RSINE1 SINE B4 -48 117 1 1 913 737 291 47 30 chr4 43065883 43066116 -112564004 + MTE2a LTR MaLR 79 315 -64 1 913 348 328 52 22 chr4 43066124 43066258 -112563862 - B4A SINE B4 -35 257 120 1 913 312 48 0 0 chr4 43066437 43066479 -112563641 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 913 287 298 0 78 chr4 43066483 43066585 -112563535 - RSINE1 SINE B4 -69 96 3 1 913 1664 31 0 0 chr4 43066598 43066789 -112563331 - B2_Mm1a SINE B2 -2 191 1 1 913 1536 43 0 5 chr4 43066796 43066983 -112563137 - B2_Mm2 SINE B2 -9 186 1 1 913 544 225 8 8 chr4 43067155 43067276 -112562844 + B1_Mur1 SINE Alu 2 122 -27 1 913 297 238 0 0 chr4 43067277 43067378 -112562742 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 913 804 167 0 0 chr4 43067449 43067617 -112562503 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 913 212 184 20 0 chr4 43068814 43068863 -112561257 + CT-rich Low_complexity Low_complexity 1 50 0 1 913 729 149 1 0 chr4 43068977 43069109 -112561011 - B2_Mm2 SINE B2 -59 134 2 1 913 928 155 7 7 chr4 43069127 43069276 -112560844 - B1_Mur4 SINE Alu 0 150 2 1 913 499 223 128 14 chr4 43069293 43069434 -112560686 - RSINE1 SINE B4 -6 159 3 2 913 1232 41 0 0 chr4 43069565 43069711 -112560409 - B1_Mus1 SINE Alu 0 148 3 2 913 657 134 223 0 chr4 43069864 43069976 -112560144 + B1_Mur4 SINE Alu 5 141 -9 2 913 761 255 13 98 chr4 43070001 43070110 -112560010 - B3 SINE B2 -1 215 124 2 913 1530 63 5 0 chr4 43070110 43070301 -112559819 + B2_Mm1a SINE B2 2 193 0 2 913 761 255 13 98 chr4 43070301 43070426 -112559694 - B3 SINE B2 -93 123 1 2 913 268 45 21 43 chr4 43070430 43070477 -112559643 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 2 913 553 196 20 72 chr4 43070481 43070633 -112559487 - ID_B1 SINE B4 0 224 85 2 913 609 289 122 79 chr4 43070642 43070946 -112559174 + MLT1F2 LTR MaLR 243 559 -1 2 913 399 314 0 9 chr4 43071347 43071453 -112558667 - ID_B1 SINE B4 -12 212 108 2 913 182 220 113 48 chr4 43071511 43071573 -112558547 + L3 LINE CR1 3731 3796 -693 2 913 397 314 33 8 chr4 43072813 43072935 -112557185 - B1F SINE Alu -3 146 22 2 913 244 287 53 83 chr4 43073859 43073992 -112556128 - ID_B1 SINE B4 -95 129 1 2 913 1240 48 0 0 chr4 43074097 43074244 -112555876 + B1_Mus2 SINE Alu 1 147 0 2 913 513 273 8 0 chr4 43074348 43074469 -112555651 - B1F SINE Alu -1 148 27 2 913 521 201 6 178 chr4 43074478 43074647 -112555473 + B1_Mur2 SINE Alu 10 149 0 2 913 326 270 22 96 chr4 43074780 43074813 -112555307 + MT2B LTR ERVL 133 155 -446 2 913 572 264 0 0 chr4 43074813 43074938 -112555182 + B1_Mus2 SINE Alu 1 125 -22 2 913 264 185 0 0 chr4 43074943 43074997 -112555123 + GA-rich Low_complexity Low_complexity 1 54 0 2 913 255 203 0 0 chr4 43075082 43075141 -112554979 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 913 245 213 0 0 chr4 43075156 43075203 -112554917 - ID_B1 SINE B4 -66 158 112 2 913 1055 205 54 0 chr4 43075345 43075550 -112554570 - B3 SINE B2 0 216 1 2 913 534 224 9 0 chr4 43075596 43075712 -112554408 - RSINE1 SINE B4 -37 128 12 2 913 195 42 0 0 chr4 43075726 43075750 -112554370 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2 913 220 159 0 64 chr4 43075757 43075804 -112554316 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 913 441 196 119 40 chr4 43075806 43075907 -112554213 - B1_Mur4 SINE Alu -40 110 2 2 913 337 258 111 13 chr4 43075915 43076071 -112554049 - B3A SINE B2 0 216 36 2 913 402 0 0 49 chr4 43076097 43076158 -112553962 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 913 1119 166 85 0 chr4 43076616 43076815 -112553305 + B3 SINE B2 1 216 0 2 913 274 224 100 56 chr4 43077051 43077141 -112552979 + B1F SINE Alu 9 102 -47 2 913 978 128 0 39 chr4 43077157 43077311 -112552809 + B1_Mus1 SINE Alu 1 148 0 2 913 462 204 21 21 chr4 43077349 43077444 -112552676 + B1_Mur4 SINE Alu 56 150 0 2 913 427 260 39 0 chr4 43077744 43077848 -112552272 + PB1D10 SINE Alu 9 116 -1 2 913 542 196 0 0 chr4 43077872 43077977 -112552143 + B1F1 SINE Alu 9 113 -7 2 913 648 228 113 27 chr4 43078247 43078432 -112551688 - B3 SINE B2 -15 201 1 2 913 276 149 0 0 chr4 43078445 43078492 -112551628 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2 913 930 112 7 7 chr4 43078493 43078645 -112551475 + B2_Mm1t SINE B2 3 154 -39 2 913 25 0 0 0 chr4 43078645 43078670 -112551450 + AT_rich Low_complexity Low_complexity 1 25 0 2 913 1054 65 57 14 chr4 43078670 43078811 -112551309 - B1_Mm SINE Alu 0 147 1 2 913 316 209 228 31 chr4 43078862 43079020 -112551100 + B2_Mm2 SINE B2 1 186 -9 2 913 281 244 0 11 chr4 43079020 43079107 -112551013 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 913 251 336 54 9 chr4 43079881 43079900 -112550220 - PB1D10 SINE Alu -1 116 39 2 913 286 329 12 0 chr4 43079900 43079985 -112550135 - ID_B1 SINE B4 -49 175 90 2 913 231 222 0 18 chr4 43080318 43080373 -112549747 + PB1 SINE Alu 72 125 -2 2 913 393 289 17 34 chr4 43080384 43080502 -112549618 + RSINE1 SINE B4 10 125 -40 2 913 261 0 0 0 chr4 43080512 43080541 -112549579 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 913 295 267 0 0 chr4 43080724 43080784 -112549336 - BC1_Mm scRNA scRNA -91 61 2 2 913 313 248 273 7 chr4 43081046 43081178 -112548942 - B3A SINE B2 -31 167 1 2 913 296 240 78 26 chr4 43081212 43081289 -112548831 - ID4 SINE ID -2 81 1 2 913 337 284 43 64 chr4 43081300 43081394 -112548726 - PB1D7 SINE Alu -28 92 1 2 913 621 272 93 10 chr4 43081564 43081768 -112548352 - ID_B1 SINE B4 -3 221 1 2 913 1144 271 114 11 chr4 43081846 43082222 -112547898 + MTD LTR MaLR 5 419 0 2 913 21 0 0 0 chr4 43082359 43082380 -112547740 + AT_rich Low_complexity Low_complexity 1 21 0 2 913 231 260 164 0 chr4 43082447 43082520 -112547600 + MTE2a LTR MaLR 9 93 -286 2 913 298 266 12 12 chr4 43083050 43083130 -112546990 + ID4 SINE ID 2 81 -2 2 913 598 36 12 0 chr4 43083322 43083405 -112546715 + L1Md_T LINE L1 6499 6582 0 2 913 1216 48 0 0 chr4 43083420 43083567 -112546553 + B1_Mus2 SINE Alu 1 147 0 2 913 228 67 0 0 chr4 43083575 43083605 -112546515 + (A)n Simple_repeat Simple_repeat 1 30 0 2 913 498 272 58 22 chr4 43083693 43083832 -112546288 + RSINE1 SINE B4 3 146 -19 2 913 668 174 80 0 chr4 43084047 43084185 -112545935 + B1_Mur3 SINE Alu 1 149 0 2 913 402 153 28 0 chr4 43084291 43084363 -112545757 + PB1D9 SINE Alu 2 75 -45 2 913 608 168 124 0 chr4 43084339 43084452 -112545668 - B3 SINE B2 -89 127 1 2 913 217 262 15 15 chr4 43084468 43084534 -112545586 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 913 242 350 60 0 chr4 43084616 43084733 -112545387 - B4 SINE B4 -145 147 24 2 913 589 198 9 0 chr4 43084751 43084857 -112545263 - B1_Mus2 SINE Alu -30 117 11 2 913 21 36 0 0 chr4 43085396 43085424 -112544696 + AT_rich Low_complexity Low_complexity 1 28 0 2 913 397 281 0 0 chr4 43085566 43085655 -112544465 - 5S rRNA rRNA -31 90 2 2 913 501 281 118 5 chr4 43085635 43085821 -112544299 - ID_B1 SINE B4 -16 208 2 2 913 462 286 9 9 chr4 43085863 43085976 -112544144 + PB1 SINE Alu 10 122 -5 2 913 344 219 121 12 chr4 43086068 43086151 -112543969 - PB1 SINE Alu -19 108 17 2 913 745 169 14 29 chr4 43086182 43086322 -112543798 - B1_Mur1 SINE Alu -6 143 6 2 913 289 289 11 43 chr4 43087083 43087177 -112542943 - RSINE1 SINE B4 -73 92 2 2 913 244 267 53 0 chr4 43087182 43087257 -112542863 - B1F SINE Alu -6 143 65 2 913 342 0 0 0 chr4 43087268 43087306 -112542814 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 913 388 252 75 112 chr4 43087329 43087490 -112542630 - B4A SINE B4 -45 247 93 2 913 1240 28 0 0 chr4 43087503 43087647 -112542473 - B1_Mus1 SINE Alu 0 148 5 2 913 693 240 112 24 chr4 43087681 43087886 -112542234 - B4A SINE B4 -68 224 2 2 913 305 174 14 0 chr4 43088233 43088302 -112541818 + CT-rich Low_complexity Low_complexity 1 70 0 2 913 22 0 0 0 chr4 43088373 43088395 -112541725 + AT_rich Low_complexity Low_complexity 1 22 0 2 913 727 228 60 60 chr4 43088416 43088598 -112541522 - B3A SINE B2 -34 182 1 2 913 321 222 28 0 chr4 43088609 43088681 -112541439 - PB1D10 SINE Alu -8 109 36 2 913 248 338 79 0 chr4 43089159 43089304 -112540816 + MIRc SINE MIR 30 192 -76 2 913 275 252 90 10 chr4 43089456 43089556 -112540564 - RSINE1 SINE B4 -17 148 41 2 913 202 29 0 54 chr4 43089557 43089594 -112540526 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 2 913 1652 179 62 43 chr4 43089623 43089997 -112540123 - RMER1C Other Other -1 1341 961 2 913 1109 75 19 0 chr4 43089997 43090156 -112539964 + (TTCTCC)n Simple_repeat Simple_repeat 5 166 0 2 913 583 131 16 0 chr4 43090157 43090258 -112539862 - B1_Mus2 SINE Alu -6 114 2 2 913 636 128 0 0 chr4 43090276 43090362 -112539758 - RMER1C Other Other -422 920 835 2 913 262 167 99 0 chr4 43091268 43091355 -112538765 + PB1D10 SINE Alu 22 117 0 2 913 359 210 59 10 chr4 43091411 43091512 -112538608 + ID_B1 SINE B4 108 213 -11 2 913 290 225 106 18 chr4 43091512 43091524 -112538596 + B1F SINE Alu 27 149 0 2 913 299 280 0 13 chr4 43091788 43091864 -112538256 - RSINE1 SINE B4 -89 76 2 2 913 261 57 0 0 chr4 43091878 43091913 -112538207 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 913 1058 115 0 0 chr4 43091924 43092072 -112538048 - B1_Mus1 SINE Alu 0 148 1 2 913 204 91 61 0 chr4 43092150 43092183 -112537937 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 913 479 240 19 0 chr4 43092184 43092288 -112537832 - ID_B1 SINE B4 -38 186 81 2 913 339 280 32 0 chr4 43093185 43093278 -112536842 - ID_B1 SINE B4 -104 120 25 2 913 597 190 74 0 chr4 43093430 43093551 -112536569 + B1_Mur1 SINE Alu 5 134 -15 2 913 666 215 0 59 chr4 43093668 43093821 -112536299 + B1_Mur1 SINE Alu 1 144 -5 2 913 318 50 0 0 chr4 43094313 43094353 -112535767 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 913 1612 57 0 0 chr4 43094566 43094759 -112535361 + B2_Mm1a SINE B2 1 193 0 2 913 204 125 19 77 chr4 43094760 43094812 -112535308 + A-rich Low_complexity Low_complexity 2 50 0 2 913 995 82 0 0 chr4 43094895 43095030 -112535090 + B1_Mus1 SINE Alu 5 139 -9 2 913 213 65 0 0 chr4 43095030 43095061 -112535059 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 913 275 24 0 67 chr4 43095328 43095373 -112534747 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 3 913 234 308 62 93 chr4 43095809 43095938 -112534182 + RLTR33 LTR ERVK 469 593 -85 3 913 1751 190 110 32 chr4 43095956 43096559 -112533561 - RMER19B LTR ERVK -196 706 133 3 913 1367 65 32 11 chr4 43096559 43096746 -112533374 - B2_Mm2 SINE B2 -3 192 2 3 913 1751 150 26 44 chr4 43096746 43096872 -112533248 - RMER19B LTR ERVK -770 132 1 3 913 553 237 0 8 chr4 43096963 43097082 -112533038 - ID_B1 SINE B4 -7 217 100 3 913 483 221 134 0 chr4 43097090 43097217 -112532903 - ID_B1 SINE B4 0 224 81 3 913 749 175 15 0 chr4 43097240 43097377 -112532743 + B1_Mur2 SINE Alu 1 139 -10 3 913 531 276 21 7 chr4 43097499 43097641 -112532479 - ID_B1 SINE B4 -2 222 79 3 913 888 123 36 0 chr4 43097666 43097804 -112532316 + B1_Mur2 SINE Alu 1 143 -6 3 913 516 214 103 0 chr4 43097849 43097966 -112532154 - B1_Mur1 SINE Alu -19 130 2 3 913 314 235 105 12 chr4 43097974 43098060 -112532060 - PB1D10 SINE Alu 0 117 24 3 913 1344 70 25 60 chr4 43098298 43098497 -112531623 - B2_Mm2 SINE B2 -3 192 1 3 913 1172 184 14 14 chr4 43098502 43098717 -112531403 - B3 SINE B2 0 216 2 3 913 1191 231 72 8 chr4 43098735 43098971 -112531149 - Lx5 LINE L1 -9 7041 6791 3 913 412 284 68 8 chr4 43098981 43099098 -112531022 - B1F1 SINE Alu -7 142 19 3 913 31 58 0 0 chr4 43099114 43099166 -112530954 + AT_rich Low_complexity Low_complexity 1 52 0 3 913 21 57 0 0 chr4 43099235 43099270 -112530850 + AT_rich Low_complexity Low_complexity 1 35 0 3 913 980 93 64 0 chr4 43099280 43099420 -112530700 - B1_Mur4 SINE Alu -1 149 1 3 913 398 308 52 44 chr4 43099457 43099593 -112530527 - RSINE1 SINE B4 0 165 29 3 913 489 217 133 0 chr4 43099739 43099859 -112530261 - B1_Mur2 SINE Alu -13 136 1 3 913 442 236 11 0 chr4 43100165 43100254 -112529866 - B1F SINE Alu -50 99 10 3 913 474 75 0 0 chr4 43100875 43100942 -112529178 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 913 323 225 162 0 chr4 43100949 43101029 -112529091 - B3 SINE B2 -71 145 53 3 913 441 293 35 0 chr4 43101210 43101326 -112528794 + PB1D7 SINE Alu 1 120 0 3 913 29 0 0 45 chr4 43101509 43101533 -112528587 + AT_rich Low_complexity Low_complexity 1 24 0 3 913 1477 75 0 0 chr4 43101533 43101719 -112528401 - B2_Mm2 SINE B2 -9 186 1 3 913 29 0 0 45 chr4 43101719 43101738 -112528382 + AT_rich Low_complexity Low_complexity 1 18 0 3 913 511 288 6 84 chr4 43101753 43101920 -112528200 - RSINE1 SINE B4 0 165 12 3 913 455 250 18 0 chr4 43101943 43102055 -112528065 - ID_B1 SINE B4 -3 221 108 3 913 219 250 77 0 chr4 43102171 43102223 -112527897 - B1F SINE Alu -93 56 1 3 913 489 244 58 15 chr4 43102291 43102428 -112527692 + B1_Mur2 SINE Alu 2 144 -5 3 913 710 268 25 20 chr4 43102452 43102654 -112527466 - B4A SINE B4 -2 290 88 3 913 436 274 42 8 chr4 43102818 43102936 -112527184 - B4A SINE B4 -165 127 6 3 913 252 257 26 51 chr4 43102940 43103018 -112527102 - PB1D10 SINE Alu -1 116 41 3 913 282 29 0 0 chr4 43103151 43103186 -112526934 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 913 329 296 139 0 chr4 43103231 43103339 -112526781 + B1F1 SINE Alu 2 124 -25 3 913 369 0 0 0 chr4 43103580 43103621 -112526499 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 913 261 289 194 37 chr4 43103634 43103655 -112526465 - ID_B1 SINE B4 -8 216 92 3 913 276 279 0 92 chr4 43103655 43103742 -112526378 - B1F2 SINE Alu -60 89 11 3 913 557 175 0 28 chr4 43103854 43103960 -112526160 - B3 SINE B2 -4 212 110 3 913 505 197 8 25 chr4 43104628 43104748 -112525372 - RCHARR1 DNA MER1_type 0 974 857 3 913 292 216 13 39 chr4 43104759 43104836 -112525284 + B4 SINE B4 2 76 -216 3 913 302 340 0 80 chr4 43105332 43105482 -112524638 - RCHARR1 DNA MER1_type -836 138 1 3 913 223 176 0 0 chr4 43105523 43105557 -112524563 - B1_Mur4 SINE Alu -116 34 1 3 913 325 288 0 0 chr4 43105777 43105857 -112524263 - ID_B1 SINE B4 -8 216 137 3 913 564 15 0 0 chr4 43105873 43105938 -112524182 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 913 372 299 26 0 chr4 43105980 43106097 -112524023 - B1F SINE Alu -29 120 1 3 913 240 258 15 29 chr4 43106163 43106231 -112523889 - ID4 SINE ID -14 69 3 3 913 660 55 92 9 chr4 43106427 43106536 -112523584 - B1_Mus2 SINE Alu -29 118 1 3 913 23 0 0 0 chr4 43106909 43106932 -112523188 + AT_rich Low_complexity Low_complexity 1 23 0 3 913 299 286 0 0 chr4 43107379 43107456 -112522664 - ID4_ SINE ID -60 92 16 3 913 275 281 39 97 chr4 43107799 43107953 -112522167 - L1MA10 LINE L1 -14 6320 6176 3 913 400 212 0 0 chr4 43108013 43108095 -112522025 - BC1_Mm scRNA scRNA -66 86 5 3 913 373 162 27 0 chr4 43108100 43108174 -112521946 - L1MB1 LINE L1 -61 6128 6053 3 913 236 157 0 38 chr4 43108254 43108307 -112521813 + CT-rich Low_complexity Low_complexity 3 53 0 3 913 435 275 0 0 chr4 43108329 43108420 -112521700 - PB1D10 SINE Alu -26 91 1 3 913 413 275 50 0 chr4 43110096 43110216 -112519904 + B1F2 SINE Alu 3 128 -21 3 913 251 268 99 0 chr4 43110438 43110509 -112519611 - PB1D7 SINE Alu -1 119 42 3 913 302 322 51 32 chr4 43111466 43111623 -112518497 - MIRc SINE MIR -66 202 43 3 913 402 257 36 27 chr4 43111627 43111739 -112518381 + PB1 SINE Alu 11 123 -4 3 913 2410 162 48 128 chr4 43111804 43111940 -112518180 - L1_Mur3 LINE L1 -3644 2236 2075 3 913 297 109 0 0 chr4 43111940 43111986 -112518134 + (ATGGTG)n Simple_repeat Simple_repeat 2 47 0 3 913 2410 162 48 128 chr4 43111986 43112017 -112518103 - L1_Mur3 LINE L1 -3806 2074 2049 3 913 2125 141 47 42 chr4 43112017 43112423 -112517697 - Lx2 LINE L1 0 6997 6590 3 913 2410 162 48 128 chr4 43112423 43112463 -112517657 - L1_Mur3 LINE L1 -3832 2048 2011 3 913 6450 99 43 32 chr4 43112463 43113454 -112516666 - Lx3B LINE L1 0 6973 5972 3 913 2410 162 48 128 chr4 43113454 43113929 -112516191 - L1_Mur3 LINE L1 -3870 2010 1607 3 913 459 162 25 0 chr4 43113944 43114024 -112516096 - B1F1 SINE Alu 0 149 68 3 913 207 0 0 0 chr4 43114047 43114070 -112516050 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 913 246 292 78 110 chr4 43114072 43114226 -112515894 - B1F SINE Alu 0 149 1 3 913 477 0 0 0 chr4 43114941 43114994 -112515126 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 913 343 324 0 0 chr4 43114994 43115099 -112515021 - PB1D10 SINE Alu -12 105 1 3 913 372 283 28 56 chr4 43115552 43115660 -112514460 - PB1D10 SINE Alu -7 110 9 3 913 216 130 0 0 chr4 43115879 43115925 -112514195 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 913 390 284 124 11 chr4 43116011 43116189 -112513931 - B3A SINE B2 0 198 1 3 913 1210 211 208 18 chr4 43116214 43116556 -112513564 - MTD LTR MaLR 0 419 13 3 913 1475 73 21 0 chr4 43116675 43116866 -112513254 - B2_Mm2 SINE B2 0 195 1 3 913 290 343 29 0 chr4 43116902 43117004 -112513116 + ID_B1 SINE B4 115 219 -5 3 913 1375 82 0 0 chr4 43117200 43117409 -112512711 - L1_Mus2 LINE L1 0 6566 6378 3 913 1193 211 259 20 chr4 43117608 43118014 -112512106 + RMER15 LTR ERVL 61 563 -12 3 913 3169 130 43 13 chr4 43118122 43118652 -112511468 - RMER15 LTR ERVL -29 546 1 3 913 411 158 97 142 chr4 43118690 43118845 -112511275 - ORR1D1 LTR MaLR -63 321 174 3 913 632 161 25 0 chr4 43118847 43119009 -112511111 + GA-rich Low_complexity Low_complexity 1 166 0 3 913 699 192 25 37 chr4 43119025 43119187 -112510933 - ORR1D1 LTR MaLR -194 180 21 3 913 657 200 27 27 chr4 43119214 43119363 -112510757 - B1_Mur1 SINE Alu 0 149 1 3 913 24 32 0 0 chr4 43119376 43119407 -112510713 + AT_rich Low_complexity Low_complexity 1 31 0 3 913 249 33 0 0 chr4 43119512 43119542 -112510578 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 913 253 269 32 11 chr4 43119548 43119642 -112510478 - L1M5 LINE L1 -2108 4038 3943 3 913 9115 68 44 7 chr4 43119671 43120726 -112509394 - Lx3_Mus LINE L1 0 7009 5929 3 913 657 0 0 0 chr4 43120733 43120806 -112509314 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 913 1111 88 0 0 chr4 43120806 43120945 -112509175 - B1_Mus1 SINE Alu -7 141 3 3 913 9115 137 59 20 chr4 43120945 43121250 -112508870 - Lx3_Mus LINE L1 -1081 5928 5725 3 913 314 253 10 90 chr4 43121315 43121415 -112508705 - RMER10B LTR ERVL -38 360 269 3 913 567 78 0 0 chr4 43121761 43121838 -112508282 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 3 913 366 206 0 0 chr4 43121846 43121919 -112508201 - ID_B1 SINE B4 0 224 152 3 114 9367 100 13 5 chr4 43121919 43123260 -112506860 - L1_Mm LINE L1 -296 5587 4235 3 914 5488 49 1 12 chr4 43123274 43123950 -112506170 + L1_Mus3 LINE L1 5588 6256 -382 3 914 2462 62 6 0 chr4 43123954 43124290 -112505830 - ORR1A1 LTR MaLR -8 338 1 3 914 8161 55 28 3 chr4 43124290 43125447 -112504673 - ORR1A1-int LTR MaLR 0 1792 607 3 914 367 211 0 0 chr4 43125445 43125516 -112504604 - B3 SINE B2 -145 71 1 3 914 1009 195 99 10 chr4 43125727 43125919 -112504201 + B3 SINE B2 4 212 -4 3 914 914 213 0 0 chr4 43126310 43126479 -112503641 - B3 SINE B2 -41 175 7 3 914 526 237 144 5 chr4 43126509 43126704 -112503416 - ORR1D1 LTR MaLR 0 370 149 3 914 257 197 0 16 chr4 43126707 43126769 -112503351 + GA-rich Low_complexity Low_complexity 1 61 0 3 914 715 219 21 42 chr4 43126769 43126960 -112503160 - ORR1D1 LTR MaLR -185 189 3 3 914 212 288 13 13 chr4 43127036 43127112 -112503008 + L2b LINE L2 3309 3384 -3 3 914 284 259 17 85 chr4 43128472 43128555 -112501565 + ID2 SINE ID 1 81 -71 3 914 396 0 0 0 chr4 43128555 43128599 -112501521 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 914 242 259 17 85 chr4 43128599 43128633 -112501487 + BC1_Mm scRNA scRNA 82 114 -38 3 914 271 331 28 57 chr4 43129117 43129258 -112500862 - MIR SINE MIR -31 231 95 4 914 26 30 0 0 chr4 43129843 43129876 -112500244 + AT_rich Low_complexity Low_complexity 1 33 0 4 914 2809 55 5 5 chr4 43130357 43130742 -112499378 - MTA_Mm LTR MaLR 0 396 12 4 914 6029 128 91 22 chr4 43130718 43131888 -112498232 - MTA_Mm-int LTR MaLR -6 1252 3 4 914 3325 43 2 8 chr4 43131888 43132286 -112497834 - MTA_Mm LTR MaLR 0 396 1 4 914 345 301 73 0 chr4 43132286 43132422 -112497698 - L1MC4 LINE L1 -1196 6846 6701 4 914 222 180 0 0 chr4 43132433 43132494 -112497626 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 914 249 308 75 0 chr4 43132953 43133060 -112497060 - L1MD LINE L1 -1182 4964 4850 4 914 521 255 52 26 chr4 43133062 43133215 -112496905 + B3A SINE B2 1 157 -41 4 914 294 138 0 0 chr4 43133216 43133274 -112496846 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 914 2970 212 240 14 chr4 43133339 43133606 -112496514 - RMER1A Other Other -5 1025 717 4 914 2826 138 7 11 chr4 43133606 43134053 -112496067 - Lx2B LINE L1 0 7000 6556 4 914 2970 212 240 14 chr4 43134053 43134585 -112495535 - RMER1A Other Other -314 716 45 4 914 216 232 129 14 chr4 43135497 43135567 -112494553 + ID4 SINE ID 3 80 -3 4 914 230 286 18 0 chr4 43135910 43135966 -112494154 - RSINE1 SINE B4 -1 164 108 4 914 782 40 0 0 chr4 43135985 43136086 -112494034 - B1_Mus2 SINE Alu -5 142 42 4 914 276 243 0 129 chr4 43136038 43136123 -112493997 - 4.5SRNA scRNA scRNA -8 86 13 4 914 422 145 3 0 chr4 43136174 43136254 -112493866 - ORR1D1 LTR MaLR -1 377 296 4 914 36106 35 0 0 chr4 43136254 43141503 -112488617 + L1Md_T LINE L1 244 5589 -297 4 914 9194 4 0 0 chr4 43141503 43142499 -112487621 + L1Md_T LINE L1 5590 6585 0 4 914 1143 217 51 94 chr4 43142501 43142633 -112487487 - ORR1D1 LTR MaLR -55 319 173 4 914 1125 62 14 0 chr4 43142633 43142779 -112487341 + B1_Mus1 SINE Alu 1 148 0 4 914 1143 217 51 94 chr4 43142779 43142977 -112487143 - ORR1D1 LTR MaLR -202 172 3 4 914 209 222 0 0 chr4 43143117 43143162 -112486958 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 914 2601 86 0 0 chr4 43143358 43143685 -112486435 - ORR1A2 LTR MaLR 0 327 1 4 914 12434 116 40 53 chr4 43143964 43145080 -112485040 - Lx LINE L1 0 6654 5575 4 914 695 43 0 0 chr4 43145080 43145172 -112484948 - BC1_Mm scRNA scRNA -60 92 1 4 914 12434 116 40 53 chr4 43145172 43145456 -112484664 - Lx LINE L1 -1080 5574 5300 4 914 661 124 9 0 chr4 43145456 43145561 -112484559 - B2_Mm2 SINE B2 -88 107 2 4 914 12434 116 40 53 chr4 43145561 43145685 -112484435 - Lx LINE L1 0 5299 5177 4 914 3347 33 5 5 chr4 43145685 43146081 -112484039 + MTA_Mm LTR MaLR 1 396 0 4 914 12434 141 58 116 chr4 43146081 43147902 -112482218 - Lx LINE L1 -707 5176 3259 4 914 1950 249 43 74 chr4 43148677 43149339 -112480781 - RMER1B Other Other 0 1066 234 4 914 275 182 36 0 chr4 43149936 43149991 -112480129 - RMER5 LTR ERV1 -90 444 388 4 914 537 274 74 0 chr4 43150014 43150149 -112479971 - RSINE1 SINE B4 -17 148 4 4 914 565 229 160 25 chr4 43150150 43150387 -112479733 - RMER5 LTR ERV1 -135 399 131 4 914 1031 210 171 46 chr4 43150387 43150578 -112479542 - MTD LTR MaLR 0 419 190 4 914 2543 72 12 0 chr4 43150578 43150898 -112479222 + ORR1A2 LTR MaLR 1 324 -3 4 914 1031 210 171 46 chr4 43150898 43151075 -112479045 - MTD LTR MaLR -230 189 5 4 914 961 236 65 0 chr4 43151498 43151697 -112478423 + B3 SINE B2 2 213 -3 4 914 370 239 34 42 chr4 43152296 43152414 -112477706 + PB1D10 SINE Alu 1 117 0 4 914 1119 76 14 0 chr4 43152418 43152562 -112477558 + B1_Mus2 SINE Alu 2 147 0 4 914 274 61 20 20 chr4 43152564 43152614 -112477506 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 4 914 379 252 9 18 chr4 43152741 43152850 -112477270 - BC1_Mm scRNA scRNA -41 111 4 4 914 327 306 67 0 chr4 43152867 43153001 -112477119 - B1F SINE Alu -6 143 1 4 914 3457 226 68 46 chr4 43153251 43154244 -112475876 - Lx8 LINE L1 -327 7146 6132 4 914 756 65 145 8 chr4 43154284 43154408 -112475712 - B2_Mm2 SINE B2 0 195 55 4 914 364 270 11 0 chr4 43154464 43154553 -112475567 - B1_Mur1 SINE Alu -32 117 28 4 914 23 54 0 0 chr4 43154563 43154600 -112475520 + AT_rich Low_complexity Low_complexity 1 37 0 4 914 1559 244 124 8 chr4 43154600 43155210 -112474910 - Lx9 LINE L1 -4 7640 6922 4 914 609 227 0 28 chr4 43155262 43155407 -112474713 - Lx9 LINE L1 -670 6974 6834 4 914 384 102 102 0 chr4 43155405 43155464 -112474656 - Lx9 LINE L1 -1147 6497 6433 4 914 248 131 0 21 chr4 43155777 43155824 -112474296 - L4 LINE RTE 0 2029 1984 4 914 729 119 87 0 chr4 43156647 43156773 -112473347 - B1_Mus2 SINE Alu -1 146 10 4 914 415 312 0 0 chr4 43157109 43157218 -112472902 - PB1D10 SINE Alu -7 110 2 4 914 334 270 62 137 chr4 43157221 43157414 -112472706 - L1MC5 LINE L1 -440 7521 7345 4 914 1568 152 144 55 chr4 43157414 43157776 -112472344 - ORR1B1 LTR MaLR 0 394 1 4 914 334 270 62 137 chr4 43157776 43157809 -112472311 - L1MC5 LINE L1 -617 7344 7312 4 914 263 204 0 0 chr4 43157987 43158036 -112472084 - B4A SINE B4 -28 264 216 4 914 50 42 0 0 chr4 43158038 43158109 -112472011 + AT_rich Low_complexity Low_complexity 1 71 0 4 914 534 283 19 44 chr4 43158226 43158385 -112471735 - B4A SINE B4 -56 236 82 4 914 238 224 119 0 chr4 43158481 43158548 -112471572 - B4 SINE B4 -19 273 199 4 914 267 303 33 11 chr4 43158657 43158747 -112471373 - B4A SINE B4 -200 92 1 4 914 349 236 2 10 chr4 43158747 43158840 -112471280 - B4 SINE B4 -202 90 2 4 914 21 0 0 0 chr4 43159047 43159068 -112471052 + AT_rich Low_complexity Low_complexity 1 21 0 4 914 2947 3 0 0 chr4 43159166 43159488 -112470632 - RLTRETN_Mm LTR ERVK 0 322 1 4 914 185 236 18 35 chr4 43159716 43159773 -112470347 - L2a LINE L2 -38 3388 3333 4 914 227 255 0 0 chr4 43159936 43159987 -112470133 - L2a LINE L2 -280 3146 3096 4 914 1277 209 112 15 chr4 43160202 43160533 -112469587 - MTD LTR MaLR 0 419 57 4 914 243 217 10 80 chr4 43160675 43160775 -112469345 - L1M4 LINE L1 -2367 3779 3687 4 914 746 244 6 0 chr4 43161202 43161362 -112468758 + RSINE1 SINE B4 1 161 -4 4 914 25 65 0 0 chr4 43161375 43161421 -112468699 + AT_rich Low_complexity Low_complexity 1 46 0 4 914 387 0 0 0 chr4 43161578 43161621 -112468499 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 914 300 198 311 47 chr4 43161623 43161729 -112468391 - RSINE1 SINE B4 -29 136 3 4 914 8266 88 13 1 chr4 43161916 43163827 -112466293 + L1_Mus3 LINE L1 4703 6637 -1 4 914 660 114 40 191 chr4 43163972 43164145 -112465975 + B1_Mus1 SINE Alu 1 147 -1 4 914 385 301 93 35 chr4 43164212 43164384 -112465736 - B3A SINE B2 -16 182 1 4 914 522 260 24 0 chr4 43164548 43164671 -112465449 + ID_B1 SINE B4 91 216 -8 4 914 4713 54 8 5 chr4 43164816 43165409 -112464711 + L1_Mus1 LINE L1 5973 6567 0 4 914 1179 61 0 0 chr4 43165588 43165736 -112464384 - B1_Mus1 SINE Alu 0 148 1 4 914 3230 212 67 16 chr4 43166364 43167048 -112463072 - Lx6 LINE L1 -1 7459 6741 4 914 613 224 208 22 chr4 43167073 43167251 -112462869 - B3 SINE B2 -4 212 2 4 914 330 265 117 10 chr4 43167257 43167360 -112462760 - PB1D10 SINE Alu -3 114 1 4 914 466 225 138 160 chr4 43167360 43167478 -112462642 - L1ME2 LINE L1 -225 5939 5853 4 914 836 174 41 20 chr4 43167478 43167625 -112462495 - B1_Mur4 SINE Alu 0 150 1 4 914 466 225 138 160 chr4 43167625 43167803 -112462317 - L1ME2 LINE L1 -312 5852 5638 4 914 1492 34 56 6 chr4 43167803 43167983 -112462137 + B2_Mm1a SINE B2 2 190 -3 4 914 466 225 138 160 chr4 43167983 43168061 -112462059 - L1ME2 LINE L1 -527 5637 5572 4 914 236 295 144 24 chr4 43168213 43168338 -112461782 - MIRb SINE MIR -93 175 36 4 914 815 313 92 11 chr4 43169299 43169648 -112460472 + MER21B LTR ERV1 380 756 -107 4 914 924 162 0 14 chr4 43170282 43170420 -112459700 - B1_Mus2 SINE Alu -9 138 3 4 914 1444 301 95 14 chr4 43170433 43171064 -112459056 - L1ME1 LINE L1 -15 6164 5483 4 914 450 260 0 0 chr4 43171174 43171270 -112458850 - PB1D10 SINE Alu -20 97 2 4 914 409 328 11 55 chr4 43171270 43171357 -112458763 - ID SINE ID -142 82 4 4 914 33 85 0 0 chr4 43171454 43171536 -112458584 + AT_rich Low_complexity Low_complexity 1 82 0 4 914 279 274 0 152 chr4 43171575 43171674 -112458446 - RSINE1 SINE B4 0 165 82 4 914 298 296 49 44 chr4 43171712 43171849 -112458271 - B4 SINE B4 -137 155 29 4 914 22 0 0 0 chr4 43172961 43172983 -112457137 + AT_rich Low_complexity Low_complexity 1 22 0 4 914 312 326 171 6 chr4 43173355 43173531 -112456589 - MIRb SINE MIR -38 230 26 4 914 21 82 0 0 chr4 43173701 43173750 -112456370 + AT_rich Low_complexity Low_complexity 1 49 0 4 914 315 0 0 0 chr4 43174394 43174429 -112455691 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 914 682 221 99 0 chr4 43174463 43174594 -112455526 - RSINE1 SINE B4 -19 146 3 4 914 198 0 0 0 chr4 43175521 43175543 -112454577 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 914 360 143 71 24 chr4 43175761 43175843 -112454277 - B1_Mur1 SINE Alu -16 133 19 4 914 395 229 68 10 chr4 43176055 43176159 -112453961 - B1_Mur1 SINE Alu 0 149 1 4 914 854 115 7 7 chr4 43176486 43176626 -112453494 - Lx2 LINE L1 -1 6996 6857 4 914 1797 86 4 16 chr4 43176627 43176875 -112453245 + Lx2 LINE L1 6609 6853 -144 4 914 3073 85 9 21 chr4 43177452 43177873 -112452247 - L1_Mus3 LINE L1 0 6638 6223 4 914 26 0 0 0 chr4 43178224 43178250 -112451870 + AT_rich Low_complexity Low_complexity 1 26 0 4 914 368 291 70 58 chr4 43179376 43179704 -112450416 - L1MC4 LINE L1 -7 8035 7704 4 914 371 276 10 20 chr4 43180188 43180288 -112449832 - PB1 SINE Alu -3 124 26 4 914 566 171 21 3 chr4 43180647 43180744 -112449376 - B1_Mur1 SINE Alu 0 149 27 4 914 304 248 19 13 chr4 43180836 43180954 -112449166 + RSINE1 SINE B4 3 121 -171 4 914 707 235 0 20 chr4 43181438 43181590 -112448530 + B1_Mur2 SINE Alu 1 149 0 4 914 360 0 0 0 chr4 43181591 43181631 -112448489 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 914 822 178 37 0 chr4 43181864 43181999 -112448121 - B1_Mur2 SINE Alu -9 140 1 4 914 219 259 0 18 chr4 43182770 43182825 -112447295 + T-rich Low_complexity Low_complexity 5 58 0 4 914 317 159 0 0 chr4 43190184 43190247 -112439873 + (CAGAGA)n Simple_repeat Simple_repeat 3 65 0 4 914 490 255 39 0 chr4 43193967 43194069 -112436051 + PB1D10 SINE Alu 2 107 -10 4 914 436 284 110 42 chr4 43194190 43194381 -112435739 - MER20 DNA MER1_type -14 205 2 5 914 300 306 148 2 chr4 43194508 43194612 -112435508 - B1F1 SINE Alu 0 117 1 5 914 949 259 77 59 chr4 43196140 43196427 -112433693 + B4A SINE B4 1 292 0 5 914 247 245 0 0 chr4 43196443 43196496 -112433624 + GA-rich Low_complexity Low_complexity 2 54 0 5 914 1230 248 125 0 chr4 43196522 43196857 -112433263 - MTD LTR MaLR -42 377 1 5 914 258 277 176 16 chr4 43197352 43197539 -112432581 - L1MC4 LINE L1 -376 7666 7450 5 914 349 286 124 23 chr4 43197943 43198072 -112432048 - B1F1 SINE Alu -7 142 1 5 914 24 0 0 0 chr4 43198075 43198099 -112432021 + AT_rich Low_complexity Low_complexity 1 24 0 5 914 22 56 0 0 chr4 43198211 43198247 -112431873 + AT_rich Low_complexity Low_complexity 1 36 0 5 914 348 335 66 10 chr4 43199159 43199355 -112430765 - RMER4A LTR ERVK -253 213 7 5 914 289 322 57 11 chr4 43199694 43199782 -112430338 - MLT1I LTR MaLR -120 291 200 5 914 325 306 73 46 chr4 43199986 43200205 -112429915 - L1MC4 LINE L1 -2338 5544 5320 5 914 624 228 107 6 chr4 43200480 43200639 -112429481 + Charlie10 DNA MER1_type 10 184 -2638 5 914 218 290 84 6 chr4 43200751 43200848 -112429272 + L2a LINE L2 3032 3133 -254 5 914 1052 226 119 68 chr4 43201094 43201446 -112428674 - ORR1D2 LTR MaLR 0 370 1 5 914 529 248 32 106 chr4 43201717 43201738 -112428382 - B4 SINE B4 -44 248 186 5 914 952 89 0 36 chr4 43201738 43201878 -112428242 - B1_Mus2 SINE Alu 0 147 13 5 914 529 248 32 106 chr4 43201878 43201915 -112428205 - B4 SINE B4 -44 185 66 5 914 203 167 48 0 chr4 43201929 43201971 -112428149 + T-rich Low_complexity Low_complexity 3 46 0 5 914 784 231 58 0 chr4 43203025 43203181 -112426939 + B3 SINE B2 2 166 -50 5 914 566 195 0 0 chr4 43203189 43203276 -112426844 - B1_Mur2 SINE Alu -56 93 7 5 914 367 255 0 93 chr4 43203197 43203305 -112426815 - MT2B LTR ERVL -361 240 143 5 914 358 294 139 53 chr4 43203317 43203468 -112426652 - RSINE1 SINE B4 0 165 2 5 914 649 341 31 5 chr4 43203468 43203692 -112426428 - B4A SINE B4 -61 231 2 5 914 227 231 62 0 chr4 43203806 43203871 -112426249 + Charlie14a DNA MER1_type 4 72 -1092 5 914 303 28 0 0 chr4 43205008 43205044 -112425076 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 914 670 177 186 0 chr4 43205130 43205254 -112424866 + B1_Mus2 SINE Alu 1 147 0 5 914 417 245 36 36 chr4 43205287 43205397 -112424723 + B3 SINE B2 103 212 -4 5 914 433 237 13 0 chr4 43205418 43205494 -112424626 + ID4 SINE ID 1 77 -6 5 914 327 308 138 64 chr4 43205494 43205792 -112424328 + L1ME3A LINE L1 5846 6165 -8 5 914 207 0 0 0 chr4 43205926 43205949 -112424171 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 914 420 173 24 36 chr4 43206255 43206339 -112423781 - B1_Mur4 SINE Alu -10 140 58 5 914 518 289 106 0 chr4 43207218 43207360 -112422760 - RSINE1 SINE B4 -5 160 4 5 914 400 232 13 47 chr4 43207501 43207630 -112422490 - Lx9 LINE L1 -3 7641 7519 5 914 324 0 0 0 chr4 43207630 43207666 -112422454 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 914 909 150 7 7 chr4 43207666 43207814 -112422306 - Lx9 LINE L1 -168 7476 7329 5 914 339 96 0 0 chr4 43207816 43207868 -112422252 + (T)n Simple_repeat Simple_repeat 1 52 0 5 914 1264 75 0 0 chr4 43207868 43208015 -112422105 - B1_Mus2 SINE Alu 0 147 1 5 914 1401 167 71 40 chr4 43208026 43208351 -112421769 - Lx9 LINE L1 -319 7325 6991 5 914 271 264 142 0 chr4 43208395 43208543 -112421577 - RMER12 LTR ERVK -471 851 683 5 914 2337 98 3 0 chr4 43208840 43209158 -112420962 - ORR1A2 LTR MaLR -8 319 1 5 914 318 267 53 0 chr4 43209267 43209342 -112420778 - ID4_ SINE ID -2 81 3 5 914 193 200 0 41 chr4 43209362 43209435 -112420685 + CT-rich Low_complexity Low_complexity 3 72 0 5 914 601 267 44 0 chr4 43209446 43209581 -112420539 - B1F1 SINE Alu -8 141 1 5 914 544 219 23 0 chr4 43209587 43209705 -112420415 + B3A SINE B2 6 128 -65 5 914 320 73 0 0 chr4 43209685 43209726 -112420394 - ORR1A2 LTR MaLR -169 158 118 5 914 251 274 149 35 chr4 43209727 43209795 -112420325 + B3 SINE B2 101 167 -49 5 914 384 40 0 0 chr4 43209795 43209845 -112420275 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 914 251 274 149 35 chr4 43209845 43209863 -112420257 + B3 SINE B2 168 196 -20 5 914 1147 258 122 65 chr4 43209948 43210491 -112419629 - RMER4B LTR ERVK 0 585 12 5 914 1285 211 60 119 chr4 43211026 43211429 -112418691 - MTE2a LTR MaLR 0 379 1 5 914 351 0 0 0 chr4 43211432 43211471 -112418649 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 914 204 125 0 0 chr4 43211473 43211505 -112418615 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 914 526 121 0 24 chr4 43211585 43211675 -112418445 - L1_Mm LINE L1 -2306 5576 5469 5 914 6957 26 3 0 chr4 43211675 43212435 -112417685 + L1Md_F3 LINE L1 5823 6584 0 5 914 391 277 92 28 chr4 43212435 43212576 -112417544 - MLT1C LTR MaLR -299 168 19 5 914 702 91 0 0 chr4 43212585 43212684 -112417436 + (TCCCC)n Simple_repeat Simple_repeat 2 100 0 5 914 753 12 0 0 chr4 43212688 43212774 -112417346 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 5 914 285 323 73 0 chr4 43212802 43212898 -112417222 - MLT1A0 LTR MaLR -25 340 238 5 914 576 77 0 0 chr4 43212917 43212995 -112417125 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 5 914 27 0 0 0 chr4 43213020 43213047 -112417073 + AT_rich Low_complexity Low_complexity 1 27 0 5 914 968 132 7 19 chr4 43213052 43213207 -112416913 + ORR1B2 LTR MaLR 5 157 -210 5 914 412 171 204 18 chr4 43213207 43213320 -112416800 - RLTR25B LTR ERVK -12 1016 883 5 914 22 0 0 0 chr4 43213354 43213376 -112416744 + AT_rich Low_complexity Low_complexity 1 22 0 5 914 1333 230 114 57 chr4 43213388 43213423 -112416697 - RLTR20B3 LTR ERVK -56 521 463 5 914 432 0 0 0 chr4 43213423 43213471 -112416649 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 914 1333 230 114 57 chr4 43213471 43213910 -112416210 - RLTR20B3 LTR ERVK -115 462 21 5 914 292 186 0 48 chr4 43214022 43214084 -112416036 - U7 snRNA snRNA -3 60 2 5 914 3372 161 113 73 chr4 43214195 43214939 -112415181 - RLTR25B LTR ERVK -253 775 2 5 914 1007 157 94 0 chr4 43214946 43215137 -112414983 + ORR1B2 LTR MaLR 159 367 0 5 914 5214 164 77 85 chr4 43215171 43215597 -112414523 + ORR1B2-int LTR MaLR 209 622 -887 5 914 1199 103 68 11 chr4 43215597 43215774 -112414346 + B2_Mm2 SINE B2 1 187 -8 5 914 5214 164 77 85 chr4 43215774 43215847 -112414273 + ORR1B2-int LTR MaLR 623 693 -816 5 914 3359 52 23 3 chr4 43215847 43216235 -112413885 - MTA_Mm LTR MaLR 0 396 1 5 914 5214 164 77 85 chr4 43216235 43216652 -112413468 + ORR1B2-int LTR MaLR 694 1111 -398 5 914 681 36 0 0 chr4 43216652 43216736 -112413384 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 914 5214 164 77 85 chr4 43216736 43217128 -112412992 + ORR1B2-int LTR MaLR 1112 1508 -1 5 914 1889 165 77 0 chr4 43217128 43217455 -112412665 + ORR1B2 LTR MaLR 1 352 -15 5 914 537 16 0 0 chr4 43218279 43218341 -112411779 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 5 914 348 24 0 0 chr4 43218370 43218411 -112411709 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 5 914 710 237 218 10 chr4 43219100 43219408 -112410712 - MTEa LTR MaLR 0 379 8 5 914 605 203 17 17 chr4 43220303 43220423 -112409697 + PB1D7 SINE Alu 1 120 0 5 914 3391 58 2 2 chr4 43221171 43221567 -112408553 + MTA_Mm LTR MaLR 1 396 0 5 914 210 354 13 0 chr4 43221842 43221921 -112408199 + GA-rich Low_complexity Low_complexity 2 81 0 5 914 245 235 0 0 chr4 43223897 43223948 -112406172 + MER3 DNA MER1_type 40 90 -119 5 914 519 239 18 0 chr4 43223976 43224089 -112406031 - ID_B1 SINE B4 0 224 110 5 914 298 296 70 20 chr4 43224091 43224191 -112405929 + RSINE1 SINE B4 3 107 -58 5 914 506 175 131 0 chr4 43224274 43224457 -112405663 + MER33 DNA MER1_type 69 275 -49 5 914 1007 107 142 6 chr4 43227163 43227332 -112402788 - B2_Mm2 SINE B2 -3 192 1 5 914 203 154 51 0 chr4 43228447 43228486 -112401634 + GA-rich Low_complexity Low_complexity 2 42 0 5 914 865 307 54 31 chr4 43231676 43232120 -112398000 + L1MC4a LINE L1 5485 5938 -1944 5 914 1015 57 7 0 chr4 43232136 43232276 -112397844 + B1_Mus2 SINE Alu 7 147 0 5 914 811 67 0 16 chr4 43232280 43232401 -112397719 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 5 914 21 0 0 0 chr4 43232673 43232694 -112397426 + AT_rich Low_complexity Low_complexity 1 21 0 5 914 1044 282 69 94 chr4 43233360 43234398 -112395722 - L1MB7 LINE L1 0 6184 5157 5 914 22 35 0 0 chr4 43234398 43234427 -112395693 + AT_rich Low_complexity Low_complexity 1 29 0 5 914 780 257 193 39 chr4 43234428 43234914 -112395206 - L1MB3 LINE L1 -4 6179 5619 5 914 225 268 42 160 chr4 43235027 43235240 -112394880 + L1M4 LINE L1 4858 5045 -1101 5 914 441 277 22 14 chr4 43235286 43235425 -112394695 - L1MB3 LINE L1 -610 5561 5422 5 914 392 252 27 0 chr4 43235405 43235516 -112394604 - L1MB3 LINE L1 -976 5170 5057 5 914 270 229 82 0 chr4 43235544 43235605 -112394515 - B4A SINE B4 -226 66 1 5 914 364 291 144 24 chr4 43235618 43235826 -112394294 - L1MB3 LINE L1 -1098 5048 4816 5 914 189 317 192 21 chr4 43235862 43236049 -112394071 + L2a LINE L2 2095 2313 -1106 5 914 268 323 192 25 chr4 43236093 43236296 -112393824 + L2a LINE L2 2400 2636 -783 5 914 597 153 8 16 chr4 43236315 43236441 -112393679 + CT-rich Low_complexity Low_complexity 3 127 0 5 914 495 48 0 0 chr4 43236438 43236500 -112393620 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 914 262 242 291 24 chr4 43236500 43236627 -112393493 - RSINE1 SINE B4 -2 163 3 5 914 561 280 93 0 chr4 43236681 43236863 -112393257 + L2a LINE L2 2693 2891 -528 5 914 278 339 64 18 chr4 43236893 43237064 -112393056 + L2a LINE L2 2997 3175 -251 5 914 275 253 21 65 chr4 43237072 43237165 -112392955 - ID_B1 SINE B4 -8 216 128 5 914 520 298 16 0 chr4 43237451 43237575 -112392545 + B4A SINE B4 109 234 -58 5 914 2232 108 35 0 chr4 43237596 43237912 -112392208 - ORR1A2 LTR MaLR 0 327 1 5 914 297 75 0 0 chr4 43238651 43238691 -112391429 + (TGG)n Simple_repeat Simple_repeat 2 41 0 5 914 21 0 0 0 chr4 43239177 43239198 -112390922 + AT_rich Low_complexity Low_complexity 1 21 0 5 914 662 335 52 8 chr4 43239200 43239468 -112390652 - B4A SINE B4 0 292 13 5 914 237 65 0 0 chr4 43242955 43242986 -112387134 + (T)n Simple_repeat Simple_repeat 1 31 0 5 914 367 287 83 30 chr4 43244298 43244431 -112385689 + B1F SINE Alu 5 144 -5 5 914 180 0 0 0 chr4 43248363 43248383 -112381737 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5 914 3159 63 5 2 chr4 43248510 43248907 -112381213 - MTB LTR MaLR -2 398 1 5 914 855 177 0 54 chr4 43249012 43249161 -112380959 + B1_Mur2 SINE Alu 2 142 -7 5 914 236 53 0 26 chr4 43249163 43249202 -112380918 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 914 209 241 84 17 chr4 43249286 43249372 -112380748 - MIRb SINE MIR -173 95 1 6 915 36 23 0 0 chr4 43254597 43254640 -112375480 + AT_rich Low_complexity Low_complexity 1 43 0 6 915 359 143 429 0 chr4 43254779 43254870 -112375250 + B1_Mus1 SINE Alu 1 130 -18 6 915 423 176 24 0 chr4 43256477 43256602 -112373518 + CT-rich Low_complexity Low_complexity 1 128 0 6 915 725 243 103 108 chr4 43257866 43258217 -112371903 - ORR1E LTR MaLR -10 349 1 6 915 482 320 65 7 chr4 43259057 43259211 -112370909 - RSINE1 SINE B4 -1 164 2 6 915 1160 75 0 0 chr4 43259285 43259432 -112370688 - B1_Mus1 SINE Alu 0 148 2 6 915 239 125 0 40 chr4 43259538 43259588 -112370532 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 6 915 1304 147 27 18 chr4 43259886 43260108 -112370012 + URR1B DNA MER1_type 1 224 -1 6 915 268 331 25 25 chr4 43261064 43261222 -112368898 + MIRb SINE MIR 85 242 -26 6 915 346 205 36 12 chr4 43264701 43264785 -112365335 + B1F SINE Alu 41 126 -23 6 915 412 342 25 71 chr4 43264879 43265077 -112365043 - L2c LINE L2 -18 3369 3181 6 915 319 314 81 24 chr4 43265639 43265677 -112364443 - ID_B1 SINE B4 -11 213 84 6 915 350 298 0 12 chr4 43265677 43265762 -112364358 - PB1D10 SINE Alu -31 86 3 6 915 234 301 119 38 chr4 43266032 43266191 -112363929 + B4A SINE B4 3 174 -118 6 915 556 182 30 0 chr4 43266136 43266235 -112363885 + B1F2 SINE Alu 33 134 -15 6 915 750 252 40 40 chr4 43266535 43266758 -112363362 - B4 SINE B4 -65 227 5 6 915 543 221 26 58 chr4 43269394 43269548 -112360572 - B1F1 SINE Alu 0 149 1 6 915 317 292 31 10 chr4 43274198 43274295 -112355825 + B1F1 SINE Alu 1 99 -50 6 915 257 89 0 97 chr4 43274692 43274754 -112355366 - Lx4B LINE L1 -5 7053 6998 6 915 513 162 81 0 chr4 43274756 43274855 -112355265 + Lx5 LINE L1 6802 6921 -137 6 915 3186 60 0 7 chr4 43274882 43275288 -112354832 + L1Md_F2 LINE L1 6180 6582 0 6 915 1252 171 52 80 chr4 43275386 43275711 -112354409 + MTB_Mm LTR MaLR 37 352 -55 6 915 351 0 0 0 chr4 43277183 43277222 -112352898 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 915 436 204 45 18 chr4 43278405 43278515 -112351605 + B1_Mur1 SINE Alu 2 114 -35 6 915 468 0 0 0 chr4 43278949 43279001 -112351119 + (TTA)n Simple_repeat Simple_repeat 2 53 0 6 915 850 188 134 5 chr4 43279224 43279411 -112350709 - B3 SINE B2 -5 211 1 6 915 972 75 0 59 chr4 43279431 43279600 -112350520 + L1_Mus2 LINE L1 6408 6566 0 6 915 519 285 0 8 chr4 43280599 43280730 -112349390 - B1F2 SINE Alu -1 148 19 6 915 358 248 151 9 chr4 43280735 43280841 -112349279 - B3 SINE B2 -60 156 36 6 915 543 128 167 0 chr4 43281287 43281389 -112348731 - PB1D9 SINE Alu 0 120 2 6 915 181 296 55 27 chr4 43281445 43281518 -112348602 - L2a LINE L2 -17 3409 3335 6 915 707 201 136 19 chr4 43282036 43282198 -112347922 - B3A SINE B2 -13 185 5 6 915 391 359 99 48 chr4 43282277 43282458 -112347662 - LTR33 LTR ERVL -84 431 231 6 915 1531 48 16 0 chr4 43282458 43282645 -112347475 + B2_Mm2 SINE B2 1 190 -5 6 915 180 0 0 0 chr4 43282648 43282668 -112347452 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 6 915 391 359 99 48 chr4 43282668 43282857 -112347263 - LTR33 LTR ERVL -285 230 38 6 915 214 352 0 0 chr4 43283181 43283252 -112346868 - L2a LINE L2 -508 2911 2841 6 915 191 291 73 0 chr4 43283394 43283449 -112346671 - MER5B DNA MER1_type -1 177 119 6 915 183 80 0 0 chr4 43283461 43283486 -112346634 + (TTGG)n Simple_repeat Simple_repeat 4 28 0 6 915 940 161 7 7 chr4 43283489 43283639 -112346481 - B1_Mur4 SINE Alu 0 150 1 6 915 393 189 40 40 chr4 43283721 43283820 -112346300 + PB1D10 SINE Alu 11 109 -8 6 915 333 250 13 0 chr4 43283831 43283907 -112346213 + B3 SINE B2 1 77 -139 6 915 197 309 73 12 chr4 43283983 43284065 -112346055 + MIRb SINE MIR 181 267 -1 6 915 310 277 129 69 chr4 43284319 43284521 -112345599 + ID_B1 SINE B4 11 224 0 6 915 490 255 0 134 chr4 43285671 43285843 -112344277 - B1_Mur1 SINE Alu 0 149 1 6 915 342 0 0 0 chr4 43286331 43286369 -112343751 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 915 269 278 184 9 chr4 43286370 43286479 -112343641 - RSINE1 SINE B4 -30 135 8 6 915 639 294 6 6 chr4 43287380 43287541 -112342579 + RSINE1 SINE B4 3 163 -2 6 915 338 362 0 0 chr4 43288063 43288179 -112341941 + ID_B1 SINE B4 81 196 -28 6 915 477 310 26 0 chr4 43288075 43288191 -112341929 + B1F1 SINE Alu 12 130 -19 6 915 955 306 86 63 chr4 43288193 43288805 -112341315 - L1M2 LINE L1 -769 5374 4744 6 915 1539 53 16 0 chr4 43288805 43288992 -112341128 - B2_Mm2 SINE B2 -5 190 1 6 915 955 306 86 63 chr4 43288992 43289088 -112341032 - L1M2 LINE L1 -1400 4743 4650 6 915 651 194 20 34 chr4 43289101 43289250 -112340870 - B1_Mur1 SINE Alu -1 148 2 6 915 557 260 96 6 chr4 43289339 43289545 -112340575 + Lx7 LINE L1 5526 5822 -478 6 915 239 297 97 21 chr4 43289667 43289760 -112340360 - PB1D10 SINE Alu -4 113 14 6 915 203 246 35 0 chr4 43290075 43290132 -112339988 + GA-rich Low_complexity Low_complexity 4 62 0 6 915 750 216 43 0 chr4 43290514 43290653 -112339467 - B1_Mur2 SINE Alu 0 149 5 6 915 2548 70 0 58 chr4 43290674 43291021 -112339099 - ORR1A2 LTR MaLR 0 327 1 6 915 10089 146 31 10 chr4 43291021 43292776 -112337344 - ORR1A2-int LTR MaLR 0 1792 1 6 915 2509 86 3 0 chr4 43292776 43293102 -112337018 - ORR1A2 LTR MaLR 0 327 1 6 915 186 43 0 0 chr4 43293645 43293668 -112336452 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 915 234 279 36 48 chr4 43293668 43293745 -112336375 - ID SINE ID -145 79 4 6 915 420 250 51 36 chr4 43293757 43293894 -112336226 - B1F SINE Alu -10 139 1 6 915 2168 107 0 32 chr4 43294014 43294353 -112335767 + Lx LINE L1 6326 6653 -1 6 915 567 107 0 0 chr4 43294559 43294643 -112335477 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 6 915 216 245 0 70 chr4 43294644 43294701 -112335419 - ID4 SINE ID -3 80 28 6 915 1733 150 81 48 chr4 43294910 43295281 -112334839 - RLTR19-int LTR ERVK -5670 467 85 6 915 1769 160 76 48 chr4 43295290 43295684 -112334436 + MTC LTR MaLR 3 407 -14 6 915 563 261 31 0 chr4 43296896 43297026 -112333094 + RSINE1 SINE B4 4 137 -28 6 915 414 0 0 0 chr4 43297033 43297079 -112333041 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 915 276 271 114 23 chr4 43297117 43297249 -112332871 + L1MC4a LINE L1 7519 7662 -220 6 915 293 277 107 0 chr4 43297388 43297500 -112332620 + L1MC4a LINE L1 7763 7850 -32 6 915 618 272 18 30 chr4 43297509 43297676 -112332444 + RSINE1 SINE B4 1 165 0 6 915 4274 125 73 29 chr4 43298018 43298766 -112331354 - Lx2B LINE L1 0 7000 6220 6 915 1030 133 199 6 chr4 43298774 43298955 -112331165 - B3 SINE B2 0 216 1 6 915 387 0 0 0 chr4 43299097 43299140 -112330980 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 915 681 168 14 7 chr4 43299153 43299291 -112330829 + ORR1D1 LTR MaLR 3 141 -233 6 915 779 70 0 34 chr4 43299308 43299427 -112330693 - B1_Mus1 SINE Alu -10 138 24 6 915 591 291 127 0 chr4 43299408 43299621 -112330499 + ORR1D1 LTR MaLR 129 368 -2 6 915 394 208 77 29 chr4 43299621 43299720 -112330400 - PB1D9 SINE Alu -16 104 1 6 915 225 0 0 0 chr4 43299730 43299755 -112330365 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 915 576 198 60 0 chr4 43299755 43299871 -112330249 - B1_Mus1 SINE Alu -24 124 2 6 915 351 293 115 55 chr4 43299871 43300088 -112330032 - L1M5 LINE L1 -460 5780 5551 6 915 1062 231 167 0 chr4 43300145 43300457 -112329663 + MTE2b LTR MaLR 2 365 -14 6 915 385 271 99 63 chr4 43300503 43300645 -112329475 - B1F SINE Alu -1 148 2 6 915 22 0 0 0 chr4 43300745 43300767 -112329353 + AT_rich Low_complexity Low_complexity 1 22 0 6 915 273 119 0 0 chr4 43301125 43301167 -112328953 + (A)n Simple_repeat Simple_repeat 1 42 0 6 915 321 47 0 0 chr4 43301574 43301617 -112328503 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 915 231 265 0 0 chr4 43301723 43301772 -112328348 - RSINE1 SINE B4 -114 51 3 6 915 1493 169 52 88 chr4 43301821 43302205 -112327915 + ORR1D1 LTR MaLR 1 370 -4 6 915 572 198 10 10 chr4 43302363 43302465 -112327655 + RSINE1 SINE B4 60 161 -4 6 915 569 227 106 0 chr4 43303068 43303200 -112326920 + RSINE1 SINE B4 5 150 -15 6 915 231 250 0 0 chr4 43303258 43303314 -112326806 + B1F SINE Alu 73 128 -21 6 915 251 288 30 0 chr4 43303324 43303390 -112326730 + ID4_ SINE ID 5 72 -11 6 915 213 121 0 0 chr4 43303412 43303445 -112326675 + (GGA)n Simple_repeat Simple_repeat 3 35 0 6 915 253 215 20 5 chr4 43303451 43303550 -112326570 - LTR37A LTR ERV1 -77 391 287 6 915 277 286 0 0 chr4 43303547 43303624 -112326496 + PB1D10 SINE Alu 41 117 0 6 915 3148 69 34 45 chr4 43303899 43304341 -112325779 - RLTR9B LTR ERVK 0 437 1 6 915 399 208 0 0 chr4 43304654 43304779 -112325341 + (TG)n Simple_repeat Simple_repeat 2 126 0 6 915 216 211 88 0 chr4 43305351 43305408 -112324712 + MIRm SINE MIR 64 125 -151 6 915 317 299 75 28 chr4 43305515 43305728 -112324392 - L1MB7 LINE L1 -313 5871 5649 6 915 732 155 188 39 chr4 43305970 43306151 -112323969 + B3 SINE B2 2 209 -7 6 915 393 215 13 0 chr4 43306236 43306315 -112323805 + L1MB8 LINE L1 6076 6155 -23 6 915 381 58 0 0 chr4 43306749 43306801 -112323319 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 915 378 238 30 0 chr4 43307214 43307315 -112322805 - PB1D10 SINE Alu -7 110 7 7 915 242 184 0 39 chr4 43308086 43308137 -112321983 + A-rich Low_complexity Low_complexity 4 52 0 7 915 611 205 198 53 chr4 43308177 43308440 -112321680 - L1MA8 LINE L1 -18 6273 5973 7 915 373 294 58 22 chr4 43308440 43308579 -112321541 + L1MA6 LINE L1 5797 5940 -351 7 915 279 264 68 11 chr4 43308588 43308676 -112321444 + B1F1 SINE Alu 1 93 -56 7 915 306 0 0 0 chr4 43308677 43308711 -112321409 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 915 618 14 0 0 chr4 43308711 43308781 -112321339 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 915 1928 130 73 46 chr4 43309094 43309506 -112320614 - RLTR31A_Mm LTR ERVK -161 423 1 7 915 1383 144 0 0 chr4 43309508 43309709 -112320411 - Lx4B LINE L1 -671 6387 6187 7 915 299 309 53 74 chr4 43309835 43310024 -112320096 - MER21B LTR ERV1 -25 838 654 7 915 207 0 0 0 chr4 43310109 43310132 -112319988 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 7 915 1251 48 0 0 chr4 43310132 43310279 -112319841 - B1_Mus2 SINE Alu 0 147 1 7 915 219 270 169 0 chr4 43310419 43310508 -112319612 - B4 SINE B4 -158 134 31 7 915 3055 15 0 0 chr4 43310595 43310932 -112319188 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 915 21344 16 2 2 chr4 43310932 43313292 -112316828 - IAPEz-int LTR ERVK 0 6481 4123 7 915 953 80 24 0 chr4 43313294 43313419 -112316701 - IAPEz-int LTR ERVK -2770 4910 4783 7 915 1845 119 4 4 chr4 43313414 43313676 -112316444 - IAPEz-int LTR ERVK -5183 2497 2236 7 915 454 66 0 32 chr4 43313665 43313728 -112316392 - IAPEz-int LTR ERVK -5062 1419 1359 7 915 4355 59 49 2 chr4 43313728 43314316 -112315804 - IAPEz-int LTR ERVK -5819 662 8 7 915 3055 15 0 0 chr4 43314316 43314653 -112315467 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 915 3042 18 0 0 chr4 43314657 43314994 -112315126 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 915 256 290 0 0 chr4 43314994 43315063 -112315057 - PB1D10 SINE Alu -40 77 9 7 915 632 251 59 45 chr4 43315108 43315329 -112314791 - ID_B1 SINE B4 0 224 1 7 915 242 293 59 22 chr4 43315867 43316003 -112314117 - L1MC LINE L1 -2133 5749 5609 7 915 212 275 82 71 chr4 43316147 43316245 -112313875 - PB1D9 SINE Alu -5 115 17 7 915 467 262 19 0 chr4 43316796 43316899 -112313221 - PB1D10 SINE Alu -8 109 5 7 915 228 100 0 0 chr4 43316925 43316965 -112313155 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 915 225 139 0 0 chr4 43317116 43317159 -112312961 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 915 641 250 126 11 chr4 43318112 43318286 -112311834 - B3 SINE B2 -15 201 8 7 915 260 355 0 9 chr4 43319022 43319130 -112310990 + CT-rich Low_complexity Low_complexity 1 107 0 7 915 1991 53 0 127 chr4 43319411 43319596 -112310524 - L1_Mur1 LINE L1 -1081 4805 4643 7 915 183 42 0 0 chr4 43319596 43319620 -112310500 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 7 915 1991 53 0 127 chr4 43319620 43319756 -112310364 - L1_Mur1 LINE L1 -1244 4642 4525 7 915 6657 68 6 5 chr4 43319756 43320622 -112309498 + Lx3_Mus LINE L1 6142 7008 -1 7 915 268 274 27 0 chr4 43320746 43320819 -112309301 - MamGypLTR2c LTR Gypsy -101 967 893 7 915 221 167 0 0 chr4 43321582 43321618 -112308502 - ID4 SINE ID 0 83 48 7 915 4461 106 61 0 chr4 43321620 43322259 -112307861 - RLTR33 LTR ERVK 0 678 1 7 915 702 35 0 0 chr4 43323474 43323559 -112306561 + (GA)n Simple_repeat Simple_repeat 1 85 0 7 915 667 89 0 38 chr4 43323723 43323828 -112306292 + B1_Mus1 SINE Alu 2 102 -46 7 915 639 171 51 0 chr4 43323896 43324013 -112306107 - B1F2 SINE Alu -1 148 26 7 915 251 302 113 0 chr4 43325098 43325204 -112304916 + MER2 DNA MER2_type 1 118 -227 7 915 377 326 8 23 chr4 43325220 43325352 -112304768 + MER2 DNA MER2_type 215 344 -1 7 915 1249 198 239 42 chr4 43325556 43325936 -112304184 + MT2A LTR ERVL 1 455 -78 7 915 548 168 0 106 chr4 43325930 43326043 -112304077 - URR1B DNA MER1_type -124 101 1 7 915 3595 199 79 43 chr4 43326043 43327270 -112302850 + MERVL_2A-int LTR ERVL 21 1400 -4361 7 915 2028 198 43 84 chr4 43327270 43327465 -112302655 - RMER5 LTR ERV1 0 534 345 7 915 761 206 20 14 chr4 43327465 43327613 -112302507 + B1_Mur2 SINE Alu 1 149 0 7 915 2028 198 43 84 chr4 43327613 43327974 -112302146 - RMER5 LTR ERV1 -190 344 1 7 915 24813 157 41 15 chr4 43328011 43332196 -112297924 + MERVL_2A-int LTR ERVL 1397 5690 -71 7 915 278 233 17 0 chr4 43332196 43332256 -112297864 + MERVL_2A-int LTR ERVL 5621 5681 -80 7 915 266 204 65 54 chr4 43332256 43332349 -112297771 + ORR1A3-int LTR MaLR 546 639 -1324 7 915 346 130 0 0 chr4 43332349 43332403 -112297717 + MERVL_2A-int LTR ERVL 5706 5759 -2 7 915 1325 219 190 82 chr4 43332411 43332845 -112297275 + MT2A LTR ERVL 3 488 -45 7 915 840 46 0 0 chr4 43332845 43332954 -112297166 + (TAGA)n Simple_repeat Simple_repeat 3 111 0 7 915 1325 219 190 82 chr4 43332954 43332997 -112297123 + MT2A LTR ERVL 489 531 -2 7 915 225 217 50 0 chr4 43333569 43333629 -112296491 + L1M4 LINE L1 5739 5801 -377 7 915 417 209 80 26 chr4 43333852 43333965 -112296155 + B1_Mur1 SINE Alu 21 139 -10 7 915 639 262 14 0 chr4 43334009 43334154 -112295966 + RSINE1 SINE B4 1 147 -18 7 915 1578 164 34 43 chr4 43334449 43334795 -112295325 - RMER4B LTR ERVK 0 585 205 7 915 820 35 252 0 chr4 43334795 43334910 -112295210 + B1_Mm SINE Alu 4 147 0 7 915 1578 187 53 57 chr4 43334910 43335102 -112295018 - RMER4B LTR ERVK -381 204 17 7 915 420 20 0 0 chr4 43336873 43336922 -112293198 + (TCC)n Simple_repeat Simple_repeat 1 49 0 7 915 281 337 104 40 chr4 43338130 43338303 -112291817 + Charlie15a DNA MER1_type 40 223 -1 7 915 217 96 18 55 chr4 43338343 43338398 -112291722 + T-rich Low_complexity Low_complexity 1 53 0 7 915 180 0 0 0 chr4 43338395 43338415 -112291705 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 7 915 888 129 50 0 chr4 43338457 43338596 -112291524 - B1_Mus1 SINE Alu -1 147 2 7 915 457 292 138 0 chr4 43338815 43339010 -112291110 - Lx7 LINE L1 -336 7360 7139 7 915 2351 170 31 43 chr4 43339007 43339493 -112290627 - L1_Mur3 LINE L1 -881 4999 4520 7 915 604 36 0 24 chr4 43339493 43339578 -112290542 + (TTTTC)n Simple_repeat Simple_repeat 4 86 0 7 915 2117 221 11 27 chr4 43339582 43340032 -112290088 - Lx6 LINE L1 -12 7448 7006 7 915 1316 239 61 61 chr4 43340033 43340509 -112289611 + RLTR20D LTR ERVK 1 476 -92 7 915 1171 225 79 20 chr4 43340575 43340829 -112289291 - Lx6 LINE L1 -450 7010 6742 7 915 640 174 59 26 chr4 43340854 43341007 -112289113 - Lx3A LINE L1 -3 6978 6821 7 915 2143 232 34 22 chr4 43340975 43341507 -112288613 - Lx6 LINE L1 -739 6721 6126 7 915 1204 140 136 55 chr4 43341504 43341776 -112288344 - L1_Mur3 LINE L1 -1378 4502 4209 7 915 871 204 97 0 chr4 43341803 43341999 -112288121 - B3 SINE B2 0 216 2 7 915 189 74 0 0 chr4 43342334 43342361 -112287759 + (T)n Simple_repeat Simple_repeat 1 27 0 7 915 641 193 0 25 chr4 43342436 43342558 -112287562 - PB1D9 SINE Alu 0 120 2 7 915 1027 93 0 0 chr4 43342584 43342734 -112287386 - B2_Mm2 SINE B2 -44 151 2 7 915 287 200 93 0 chr4 43342948 43343023 -112287097 + ID4_ SINE ID 2 83 0 7 915 409 260 136 80 chr4 43343625 43343963 -112286157 + ORR1E LTR MaLR 1 357 -2 7 915 214 50 50 0 chr4 43344094 43344134 -112285986 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 7 915 1231 48 0 0 chr4 43344141 43344288 -112285832 - B1_Mm SINE Alu 0 147 1 7 915 767 130 15 0 chr4 43344291 43344422 -112285698 + (TTTC)n Simple_repeat Simple_repeat 3 135 0 7 915 351 289 157 0 chr4 43344518 43344639 -112285481 + B4 SINE B4 149 288 -4 7 915 2124 89 86 7 chr4 43344835 43345139 -112284981 + ORR1A4 LTR MaLR 1 328 -1 7 915 356 221 148 17 chr4 43345187 43345302 -112284818 + B3 SINE B2 1 130 -86 7 915 417 54 0 0 chr4 43345329 43345385 -112284735 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 915 287 230 54 0 chr4 43345604 43345678 -112284442 + B1F1 SINE Alu 64 141 -8 7 915 972 223 35 5 chr4 43345901 43346104 -112284016 + B3 SINE B2 5 213 -3 7 915 383 254 146 0 chr4 43346184 43346314 -112283806 + L1M2 LINE L1 5432 5580 -720 7 915 232 130 0 80 chr4 43346840 43346890 -112283230 + C-rich Low_complexity Low_complexity 2 47 0 7 915 215 79 26 0 chr4 43346970 43347008 -112283112 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 7 915 507 220 27 9 chr4 43347344 43347454 -112282666 - PB1D10 SINE Alu 0 117 6 7 915 289 245 80 54 chr4 43347368 43347480 -112282640 - MT2B2 LTR ERVL -334 250 136 7 915 1531 169 81 26 chr4 43347772 43348119 -112282001 + ORR1C1 LTR MaLR 1 366 -12 7 915 24 32 0 0 chr4 43348179 43348210 -112281910 + AT_rich Low_complexity Low_complexity 1 31 0 7 915 664 290 78 40 chr4 43348654 43349024 -112281096 + L1M2 LINE L1 4110 4493 -1650 7 915 524 249 164 68 chr4 43349032 43349368 -112280752 - RLTR9A LTR ERVK 0 368 1 7 915 348 248 31 55 chr4 43349480 43349608 -112280512 - IAP-d-int LTR ERVK -32 6510 6386 7 915 707 281 37 22 chr4 43349718 43349991 -112280129 - RLTR6-int LTR ERV1 -115 7663 7387 7 915 6222 91 13 25 chr4 43349986 43350892 -112279228 - RMER16-int LTR ERVK -1068 4338 3444 7 915 836 306 34 14 chr4 43350882 43351174 -112278946 - SRV_MM-int LTR ERVK -4071 2096 1799 7 915 240 121 259 0 chr4 43351176 43351234 -112278886 - RMER16 LTR ERVK -219 314 242 7 915 420 119 0 17 chr4 43351234 43351294 -112278826 - RMER16-int LTR ERVK -4866 2540 2482 7 915 6840 136 62 25 chr4 43351300 43352460 -112277660 - RMER16-int LTR ERVK -3846 1560 358 7 915 492 18 0 0 chr4 43352460 43352517 -112277603 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 915 505 241 238 55 chr4 43352914 43353225 -112276895 - RLTR9A LTR ERVK 0 368 1 7 915 985 301 50 21 chr4 43353240 43353623 -112276497 + L1M2 LINE L1 4511 4904 -1239 7 915 405 0 0 0 chr4 43353714 43353759 -112276361 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 915 330 143 0 0 chr4 43353799 43353876 -112276244 + (T)n Simple_repeat Simple_repeat 1 77 0 7 915 1240 34 0 7 chr4 43353879 43354027 -112276093 - B1_Mm SINE Alu 0 147 1 7 915 1312 41 0 23 chr4 43354050 43354226 -112275894 - B2_Mm2 SINE B2 -18 177 6 7 915 216 0 0 0 chr4 43354228 43354252 -112275868 + (CCA)n Simple_repeat Simple_repeat 2 25 0 7 915 453 218 48 16 chr4 43354280 43354406 -112275714 - B2_Mm2 SINE B2 -1 194 65 7 915 824 173 0 7 chr4 43354634 43354774 -112275346 - B1_Mur1 SINE Alu -8 141 3 7 915 597 244 32 85 chr4 43355645 43355833 -112274287 + Lx9 LINE L1 7340 7517 -127 7 915 690 184 16 53 chr4 43355829 43356018 -112274102 + Lx9 LINE L1 7458 7639 -5 7 915 432 37 0 0 chr4 43356321 43356375 -112273745 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 915 231 302 15 45 chr4 43356407 43356473 -112273647 + B4 SINE B4 225 288 -4 7 915 545 277 105 21 chr4 43356519 43356862 -112273258 + L1MB7 LINE L1 5618 5991 -193 8 915 1199 61 0 0 chr4 43357050 43357197 -112272923 + B1_Mus2 SINE Alu 1 147 0 8 915 1426 200 64 37 chr4 43357586 43357960 -112272160 - ORR1C2 LTR MaLR 0 384 1 8 915 1376 146 63 0 chr4 43357960 43358214 -112271906 - ORR1C2-int LTR MaLR 0 1370 1101 8 915 681 261 221 86 chr4 43358456 43358863 -112271257 + MT2A LTR ERVL 1 462 -71 8 915 365 143 29 0 chr4 43358864 43358934 -112271186 + CT-rich Low_complexity Low_complexity 4 75 0 8 915 1574 120 0 0 chr4 43358972 43359180 -112270940 - MERVL_2A-int LTR ERVL -2551 3210 3003 8 915 510 194 10 0 chr4 43359180 43359278 -112270842 - ORR1C2-int LTR MaLR -1271 99 1 8 915 1836 118 158 15 chr4 43359278 43359614 -112270506 - ORR1C2 LTR MaLR 0 384 1 8 915 316 298 99 0 chr4 43359642 43359763 -112270357 + B4 SINE B4 1 133 -159 8 915 2475 199 19 2 chr4 43359842 43360310 -112269810 - Lx9 LINE L1 -641 7003 6528 8 915 1946 195 79 86 chr4 43360316 43360911 -112269209 + Lx9 LINE L1 7024 7614 -30 8 915 571 275 103 26 chr4 43360935 43361129 -112268991 - B3 SINE B2 -3 213 5 8 915 330 26 0 0 chr4 43361129 43361168 -112268952 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 915 353 312 9 0 chr4 43361579 43361688 -112268432 - PB1D10 SINE Alu -6 111 2 8 915 807 166 7 20 chr4 43361798 43361946 -112268174 - B1_Mur3 SINE Alu -2 147 2 8 915 399 206 78 0 chr4 43361947 43362049 -112268071 - L1MA6 LINE L1 -51 6249 6140 8 915 2779 169 64 120 chr4 43362062 43362767 -112267353 + RMER1B Other Other 363 1033 -33 8 915 3746 119 115 18 chr4 43362767 43363419 -112266701 - RLTR19B LTR ERVK 0 715 1 8 915 2779 169 64 120 chr4 43363419 43363432 -112266688 + RMER1B Other Other 1034 1041 -25 8 915 321 309 25 0 chr4 43363669 43363750 -112266370 - RSINE1 SINE B4 -31 134 52 8 915 1138 206 10 0 chr4 43363802 43364011 -112266109 + B3 SINE B2 1 211 -5 8 915 1554 242 43 49 chr4 43364405 43364875 -112265245 - Lx8 LINE L1 -579 6894 6428 8 915 2471 151 15 62 chr4 43365228 43365615 -112264505 - RLTR17 LTR ERVK -2 690 329 8 915 3870 25 0 0 chr4 43365615 43366056 -112264064 - L1Md_F3 LINE L1 -14 6570 6130 8 915 2471 151 15 62 chr4 43366056 43366133 -112263987 - RLTR17 LTR ERVK -364 328 248 8 915 1115 193 15 19 chr4 43367008 43367214 -112262906 - B3 SINE B2 -10 206 2 8 915 249 339 82 35 chr4 43367301 43367533 -112262587 - MIRc SINE MIR -20 248 6 8 915 1086 86 0 0 chr4 43367869 43368008 -112262112 - B1_Mus1 SINE Alu -9 139 1 8 915 277 268 12 0 chr4 43369189 43369271 -112260849 + MER2 DNA MER2_type 161 243 -102 8 915 372 246 52 73 chr4 43369470 43369606 -112260514 + B1F2 SINE Alu 5 137 -12 8 915 234 0 0 0 chr4 43369606 43369632 -112260488 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 8 915 1566 253 71 8 chr4 43370625 43371135 -112258985 + L1MB8 LINE L1 5364 5905 -273 8 915 426 96 0 0 chr4 43371294 43371367 -112258753 + (CATA)n Simple_repeat Simple_repeat 2 74 0 8 915 1216 55 0 0 chr4 43371418 43371563 -112258557 - B1_Mm SINE Alu -1 146 2 8 915 254 212 116 12 chr4 43371663 43371749 -112258371 + L1MB8 LINE L1 6070 6164 -20 8 915 503 242 65 13 chr4 43371771 43371926 -112258194 - RSINE1 SINE B4 0 165 3 8 915 3455 23 2 8 chr4 43372192 43372589 -112257531 - MTA_Mm LTR MaLR -1 395 1 8 915 2867 145 77 40 chr4 43372661 43373447 -112256673 - RLTR13D3 LTR ERVK 0 1114 2 8 915 274 299 41 10 chr4 43373914 43374012 -112256108 - MamSINE1 SINE tRNA -103 187 87 8 915 298 244 37 37 chr4 43374396 43374477 -112255643 - PB1D9 SINE Alu 0 120 40 8 915 519 287 11 11 chr4 43375066 43375146 -112254974 + ID SINE ID 1 80 -144 8 915 258 289 57 16 chr4 43375146 43375269 -112254851 + B1F SINE Alu 1 128 -21 8 915 198 103 0 0 chr4 43375281 43375310 -112254810 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 8 915 1242 34 0 0 chr4 43375936 43376083 -112254037 + B1_Mus2 SINE Alu 1 147 0 8 915 342 0 0 0 chr4 43376125 43376163 -112253957 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 915 493 157 167 0 chr4 43376664 43376772 -112253348 + B1_Mur2 SINE Alu 2 127 -22 8 915 266 214 57 45 chr4 43376694 43376782 -112253338 + RLTR25A LTR ERVK 522 610 -493 8 915 219 127 68 68 chr4 43376761 43376820 -112253300 + B1_Mur4 SINE Alu 89 147 -3 8 915 744 215 6 0 chr4 43377955 43378113 -112252007 + RSINE1 SINE B4 3 161 -4 8 915 1048 116 0 0 chr4 43380014 43380161 -112249959 + B1_Mus2 SINE Alu 1 147 0 8 915 485 254 9 0 chr4 43381348 43381458 -112248662 - B3 SINE B2 -5 211 101 8 915 213 219 0 0 chr4 43384236 43384277 -112245843 - B3A SINE B2 -66 132 92 8 915 588 214 31 8 chr4 43384312 43384439 -112245681 - B3 SINE B2 -84 132 3 8 916 21 0 0 0 chr4 43384928 43384949 -112245171 + AT_rich Low_complexity Low_complexity 1 21 0 8 916 335 260 84 28 chr4 43384991 43385098 -112245022 - RSINE1 SINE B4 -51 114 2 8 916 203 188 21 0 chr4 43386376 43386424 -112243696 + GA-rich Low_complexity Low_complexity 1 49 0 8 916 201 121 0 0 chr4 43387374 43387407 -112242713 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 916 330 206 156 18 chr4 43387764 43387873 -112242247 - B1F SINE Alu -25 124 1 8 916 567 274 102 73 chr4 43388098 43388373 -112241747 - B4 SINE B4 0 292 10 8 916 366 207 23 47 chr4 43388379 43388465 -112241655 - B1F SINE Alu -1 148 65 8 916 696 161 41 14 chr4 43389452 43389549 -112240571 - RLTR20C LTR ERVK 0 534 434 8 916 342 67 0 0 chr4 43389549 43389594 -112240526 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 916 696 161 41 14 chr4 43389594 43389641 -112240479 - RLTR20C LTR ERVK -101 433 387 8 916 875 27 0 17 chr4 43389660 43389775 -112240345 - B1_Mm SINE Alu 0 147 35 8 916 231 114 0 0 chr4 43389785 43389820 -112240300 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 8 916 1033 53 119 0 chr4 43389861 43390012 -112240108 - B2_Mm2 SINE B2 -26 169 1 8 916 368 154 255 7 chr4 43390022 43390167 -112239953 - RLTR20C LTR ERVK -175 359 179 8 916 497 179 258 34 chr4 43390436 43390608 -112239512 + B3A SINE B2 6 216 0 8 916 372 309 49 21 chr4 43390621 43390763 -112239357 + B1F SINE Alu 3 148 -1 8 916 488 255 0 0 chr4 43390901 43391003 -112239117 - PB1D10 SINE Alu 0 117 16 8 916 319 276 228 31 chr4 43391003 43391028 -112239092 - ID_B1 SINE B4 0 224 73 8 916 990 168 69 10 chr4 43391759 43391963 -112238157 - B3 SINE B2 0 216 1 8 916 221 313 29 68 chr4 43392067 43392170 -112237950 + RSINE1 SINE B4 25 123 -42 8 916 716 89 8 0 chr4 43392191 43392314 -112237806 + (GA)n Simple_repeat Simple_repeat 2 125 0 8 916 741 161 40 0 chr4 43392334 43392458 -112237662 + B1_Mur1 SINE Alu 11 139 -10 8 916 185 0 40 0 chr4 43392458 43392483 -112237637 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 8 916 212 346 90 23 chr4 43392615 43392748 -112237372 - L2 LINE L2 -610 2809 2668 8 916 533 209 58 65 chr4 43392782 43392920 -112237200 - B3 SINE B2 -3 213 77 8 916 218 154 19 19 chr4 43392950 43393003 -112237117 + (TTG)n Simple_repeat Simple_repeat 2 54 0 8 916 350 250 33 19 chr4 43393216 43393328 -112236792 + B2_Mm2 SINE B2 31 153 -63 8 916 561 157 141 0 chr4 43393398 43393519 -112236601 + B1_Mur1 SINE Alu 12 149 0 8 916 225 284 37 3 chr4 43393713 43393812 -112236308 - B1_Mur1 SINE Alu -7 142 40 8 916 353 255 21 11 chr4 43393839 43393934 -112236186 - RMER10B LTR ERVL -34 364 269 8 916 314 159 191 0 chr4 43394192 43394255 -112235865 - PB1D9 SINE Alu -44 76 2 8 916 182 191 21 21 chr4 43395710 43395758 -112234362 + L2c LINE L2 3321 3368 -19 8 916 207 0 0 0 chr4 43395772 43395795 -112234325 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 8 916 237 33 0 0 chr4 43395960 43395990 -112234130 + (T)n Simple_repeat Simple_repeat 1 30 0 8 916 189 0 0 0 chr4 43396490 43396511 -112233609 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 8 916 438 204 54 0 chr4 43396515 43396608 -112233512 - PB1D9 SINE Alu -18 102 5 8 916 240 172 43 86 chr4 43396909 43396979 -112233141 - MER53 DNA hAT -1 192 126 8 916 994 169 69 10 chr4 43397500 43397703 -112232417 - B3 SINE B2 0 216 2 8 916 492 243 51 72 chr4 43397711 43397906 -112232214 - L1MB3 LINE L1 -129 6054 5864 8 916 273 219 144 10 chr4 43397910 43398007 -112232113 - L1MB3 LINE L1 -856 5284 5175 8 916 257 153 76 0 chr4 43398011 43398073 -112232047 - PB1D10 SINE Alu 0 149 63 8 916 1030 237 47 26 chr4 43398073 43398415 -112231705 - L1MB3 LINE L1 -1703 4437 4089 8 916 728 239 11 53 chr4 43398533 43398723 -112231397 + B3A SINE B2 1 182 -16 8 916 1163 55 0 0 chr4 43398746 43398892 -112231228 - B1_Mm SINE Alu -1 146 1 8 916 205 51 0 49 chr4 43398956 43398997 -112231123 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 8 916 464 222 0 11 chr4 43399137 43399228 -112230892 - B3 SINE B2 0 216 127 8 916 237 233 189 14 chr4 43399488 43399562 -112230558 - PB1D10 SINE Alu -8 109 23 8 916 2058 101 9 12 chr4 43399722 43400042 -112230078 - ORR1A2 LTR MaLR -8 319 1 8 916 778 231 85 0 chr4 43400448 43400647 -112229473 + B3 SINE B2 1 216 0 8 916 927 134 7 7 chr4 43400657 43400807 -112229313 - B1_Mur4 SINE Alu 0 150 1 8 916 1320 51 67 0 chr4 43400815 43400993 -112229127 - B2_Mm2 SINE B2 -5 190 1 8 916 812 153 20 14 chr4 43401198 43401344 -112228776 - B1_Mur1 SINE Alu -2 147 1 8 916 665 211 49 18 chr4 43401383 43401547 -112228573 + B3 SINE B2 35 203 -13 8 916 290 213 26 44 chr4 43401554 43401667 -112228453 + (CATG)n Simple_repeat Simple_repeat 1 111 0 8 916 364 284 63 48 chr4 43401678 43401885 -112228235 - RLTR21 LTR ERVK -266 1306 1097 8 916 305 182 0 0 chr4 43401857 43401912 -112228208 + B3 SINE B2 155 209 -7 8 916 614 226 14 14 chr4 43401914 43402053 -112228067 - B1_Mur1 SINE Alu 0 149 11 8 916 918 241 5 0 chr4 43402151 43402342 -112227778 + B3 SINE B2 1 192 -24 8 916 190 286 94 16 chr4 43402462 43402526 -112227594 - L2 LINE L2 -372 3047 2979 8 916 382 327 26 0 chr4 43402654 43402767 -112227353 + B1F SINE Alu 31 146 -3 9 916 710 176 59 0 chr4 43403024 43403160 -112226960 - B1F2 SINE Alu 0 149 6 9 916 213 193 121 17 chr4 43403474 43403532 -112226588 - PB1D10 SINE Alu -8 109 46 9 916 1298 142 9 35 chr4 43403997 43404224 -112225896 - URR1B DNA MER1_type -4 221 1 9 916 261 222 0 0 chr4 43404279 43404342 -112225778 + CT-rich Low_complexity Low_complexity 1 63 0 9 916 672 187 67 0 chr4 43404345 43404479 -112225641 - B1_Mur1 SINE Alu -5 144 2 9 916 202 269 89 36 chr4 43404940 43405052 -112225068 - MIRb SINE MIR -15 253 136 9 916 1159 185 0 19 chr4 43405054 43405269 -112224851 + B3 SINE B2 6 216 0 9 916 373 278 9 9 chr4 43405357 43405466 -112224654 + PB1D10 SINE Alu 4 112 -5 9 916 1101 75 0 13 chr4 43405475 43405624 -112224496 + B1_Mm SINE Alu 1 147 0 9 916 1384 65 16 0 chr4 43405659 43405844 -112224276 + B2_Mm2 SINE B2 2 189 -6 9 916 755 222 199 0 chr4 43405850 43406026 -112224094 + B3 SINE B2 1 211 -5 9 916 631 208 7 71 chr4 43406054 43406209 -112223911 + RSINE1 SINE B4 2 146 -19 9 916 414 0 0 0 chr4 43406278 43406324 -112223796 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 916 491 282 233 25 chr4 43406403 43406643 -112223477 - B4 SINE B4 -2 290 1 9 916 638 231 70 30 chr4 43406708 43406909 -112223211 - B3 SINE B2 -6 210 2 9 916 427 275 60 7 chr4 43408305 43408461 -112221659 - L1MA5 LINE L1 -23 6277 6101 9 916 262 350 48 48 chr4 43409454 43409622 -112220498 + MIRb SINE MIR 84 251 -17 9 916 701 120 28 0 chr4 43410157 43410299 -112219821 + (CATA)n Simple_repeat Simple_repeat 4 149 0 9 916 204 67 0 0 chr4 43410382 43410412 -112219708 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 9 916 649 152 52 74 chr4 43410412 43410536 -112219584 - B1_Mur4 SINE Alu -10 140 19 9 916 473 254 56 6 chr4 43410558 43410736 -112219384 + L1MA7 LINE L1 6105 6291 0 9 916 246 346 8 0 chr4 43410746 43410842 -112219278 + MER58C DNA MER1_type 116 214 -1 9 916 285 254 28 0 chr4 43413081 43413152 -112216968 - ID_B1 SINE B4 0 224 152 9 916 522 299 131 38 chr4 43415706 43415942 -112214178 - B4A SINE B4 0 292 35 9 916 203 0 37 0 chr4 43416002 43416029 -112214091 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 9 916 1109 37 0 0 chr4 43416030 43416165 -112213955 - B1_Mus1 SINE Alu -12 136 2 9 916 600 293 23 17 chr4 43416558 43416735 -112213385 + B4 SINE B4 9 186 -106 9 916 590 279 0 31 chr4 43416818 43416977 -112213143 + RSINE1 SINE B4 5 158 -7 9 916 307 274 34 102 chr4 43417256 43417374 -112212746 - PB1D10 SINE Alu -7 110 1 9 916 251 293 26 13 chr4 43417971 43418047 -112212073 + MER2 DNA MER2_type 2 78 -267 9 916 809 176 0 21 chr4 43418204 43418349 -112211771 - B1_Mur2 SINE Alu 0 149 8 9 916 192 77 0 0 chr4 43419101 43419127 -112210993 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 9 916 495 48 0 0 chr4 43419843 43419905 -112210215 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 9 916 800 169 14 14 chr4 43421036 43421180 -112208940 + B1_Mur3 SINE Alu 4 147 -2 9 916 370 274 68 0 chr4 43421533 43421650 -112208470 - ID_B1 SINE B4 0 224 100 9 916 376 266 192 13 chr4 43421925 43422081 -112208039 - L1ME4a LINE L1 -64 6060 5877 9 916 384 297 42 0 chr4 43422111 43422229 -112207891 - PB1 SINE Alu -4 123 1 9 916 209 108 0 26 chr4 43422253 43422291 -112207829 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 916 206 268 0 0 chr4 43422683 43422739 -112207381 + C-rich Low_complexity Low_complexity 1 56 0 9 916 293 119 23 0 chr4 43422797 43422856 -112207264 - B1_Mur1 SINE Alu 0 149 89 9 916 776 289 102 108 chr4 43422877 43423042 -112207078 - L1MB7 LINE L1 -82 6102 5922 9 916 1084 52 0 0 chr4 43423042 43423178 -112206942 + B1_Mus2 SINE Alu 1 136 -11 9 916 185 0 40 0 chr4 43423178 43423203 -112206917 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 9 916 776 289 102 108 chr4 43423203 43423720 -112206400 - L1MB7 LINE L1 -263 5921 5421 9 916 1069 75 7 0 chr4 43423720 43423866 -112206254 - B1_Mus2 SINE Alu 0 147 1 9 916 776 289 102 108 chr4 43423866 43423952 -112206168 - L1MB7 LINE L1 -764 5420 5337 9 916 371 261 53 23 chr4 43423957 43424090 -112206030 + B1_Mur1 SINE Alu 5 141 -8 9 916 429 109 0 0 chr4 43424090 43424154 -112205966 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 9 916 338 256 11 0 chr4 43424155 43424245 -112205875 - L1MB7 LINE L1 -858 5288 5198 9 916 954 266 51 4 chr4 43424246 43424521 -112205599 - B4 SINE B4 -3 289 2 9 916 770 278 5 0 chr4 43424645 43424836 -112205284 + ID_B1 SINE B4 24 215 -9 9 916 340 82 333 9 chr4 43424836 43424944 -112205176 - B2_Mm2 SINE B2 -6 189 47 9 916 1129 55 0 7 chr4 43425061 43425208 -112204912 - B1_Mus1 SINE Alu 0 148 3 9 916 914 144 14 0 chr4 43425209 43425355 -112204765 - B2_Mm2 SINE B2 -47 148 1 9 916 1155 174 13 22 chr4 43425983 43426207 -112203913 + URR1A DNA MER1_type 5 226 0 9 916 1230 198 83 6 chr4 43426453 43426768 -112203352 + Lx4B LINE L1 6698 6997 -61 9 916 335 78 20 0 chr4 43427034 43427085 -112203035 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 916 329 256 0 34 chr4 43427085 43427174 -112202946 + RSINE1 SINE B4 72 157 -8 9 916 212 269 12 49 chr4 43429924 43430006 -112200114 + PB1D7 SINE Alu 37 115 -5 9 916 201 363 154 18 chr4 43430083 43430414 -112199706 - L2b LINE L2 -26 3349 2974 9 916 238 326 0 50 chr4 43430607 43430707 -112199413 + B1_Mur1 SINE Alu 41 135 -14 9 916 267 299 12 49 chr4 43430846 43430927 -112199193 + ID_B1 SINE B4 78 155 -69 9 916 505 243 82 14 chr4 43430927 43431073 -112199047 + RSINE1 SINE B4 2 157 -8 9 916 625 176 74 30 chr4 43431096 43431231 -112198889 + B1_Mur1 SINE Alu 1 141 -8 9 916 303 281 65 33 chr4 43431500 43431592 -112198528 + L1M4b LINE L1 1831 1925 -5409 9 916 317 274 128 64 chr4 43431676 43431801 -112198319 + RSINE1 SINE B4 3 135 -30 9 916 391 261 120 48 chr4 43431816 43432025 -112198095 - ID_B1 SINE B4 0 224 1 9 916 211 273 24 61 chr4 43433064 43433146 -112196974 + MIR SINE MIR 14 92 -170 9 916 383 256 150 25 chr4 43433191 43433311 -112196809 + ID_B1 SINE B4 88 222 -2 9 916 1189 34 7 0 chr4 43433670 43433817 -112196303 + B1_Mus1 SINE Alu 1 148 0 9 916 632 191 32 0 chr4 43436005 43436131 -112193989 + B1_Mur2 SINE Alu 1 130 -19 9 916 216 97 0 0 chr4 43438651 43438682 -112191438 + (CAG)n Simple_repeat Simple_repeat 3 33 0 9 916 227 54 27 0 chr4 43439890 43439927 -112190193 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 916 253 232 27 55 chr4 43441602 43441675 -112188445 - ID4_ SINE ID -11 72 2 9 916 535 69 34 0 chr4 43442216 43442307 -112187813 + B1_Mus2 SINE Alu 34 136 -12 9 916 954 100 0 0 chr4 43442307 43442447 -112187673 + (GA)n Simple_repeat Simple_repeat 1 140 0 9 916 393 219 135 0 chr4 43443500 43443596 -112186524 + PB1D10 SINE Alu 1 109 -8 9 916 283 231 231 0 chr4 43443932 43444040 -112186080 - ID_B1 SINE B4 -14 210 78 9 916 376 275 172 81 chr4 43444175 43444361 -112185759 + ID_B1 SINE B4 1 203 -21 9 916 1267 54 0 0 chr4 43444398 43444545 -112185575 + B1_Mus2 SINE Alu 1 147 0 9 916 200 31 0 59 chr4 43444545 43444579 -112185541 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 9 916 476 219 31 10 chr4 43444895 43444992 -112185128 + PB1D7 SINE Alu 3 101 -19 9 916 531 0 0 0 chr4 43445007 43445066 -112185054 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 9 916 21 36 0 0 chr4 43445088 43445116 -112185004 + AT_rich Low_complexity Low_complexity 1 28 0 9 916 646 210 26 31 chr4 43445220 43445386 -112184734 + B3 SINE B2 28 192 -1 9 916 294 247 21 105 chr4 43445423 43445518 -112184602 + ID_B1 SINE B4 107 193 -31 9 916 1560 32 0 26 chr4 43445543 43445734 -112184386 + B2_Mm1a SINE B2 2 187 -6 9 916 1458 142 34 0 chr4 43445820 43446059 -112184061 - MTC LTR MaLR -174 247 1 9 916 1290 89 10 45 chr4 43446154 43446354 -112183766 + B2_Mm2 SINE B2 1 193 -2 9 916 1059 156 287 56 chr4 43446414 43446568 -112183552 - RMER10A LTR ERVL 0 442 299 9 916 324 0 0 0 chr4 43446568 43446604 -112183516 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 9 916 1059 156 287 56 chr4 43446604 43446808 -112183312 - RMER10A LTR ERVL -144 298 3 9 916 252 238 132 36 chr4 43447403 43447486 -112182634 + MLT1H2 LTR MaLR 377 467 -22 9 916 638 291 0 13 chr4 43447478 43447628 -112182492 - ID_B1 SINE B4 0 224 77 9 916 249 271 209 43 chr4 43447756 43447895 -112182225 + RSINE1 SINE B4 3 164 -1 9 916 306 0 0 0 chr4 43447918 43447952 -112182168 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 916 811 174 7 7 chr4 43447994 43448139 -112181981 + B1_Mur3 SINE Alu 2 146 -3 9 916 384 277 11 0 chr4 43448158 43448252 -112181868 + PB1D7 SINE Alu 21 115 -5 9 916 1358 116 28 14 chr4 43448575 43448793 -112181327 + URR1B DNA MER1_type 5 225 0 9 916 303 327 118 44 chr4 43448795 43449092 -112181028 - L2 LINE L2 -636 2783 2465 9 916 656 215 72 22 chr4 43449099 43449237 -112180883 + B1_Mur2 SINE Alu 2 146 -3 9 916 230 236 134 41 chr4 43449262 43449273 -112180847 + YREP_Mm Unknown Unknown 182 287 -1525 9 916 479 221 0 0 chr4 43449273 43449359 -112180761 - ID_B1 SINE B4 -28 196 111 9 916 260 347 128 23 chr4 43449385 43449642 -112180478 - L2 LINE L2 -995 2424 2141 9 916 700 310 65 46 chr4 43449698 43450070 -112180050 - MTE2b LTR MaLR 0 379 1 1 916 387 323 11 67 chr4 43450217 43450396 -112179724 - B4A SINE B4 -1 291 123 1 916 540 277 26 33 chr4 43450820 43450973 -112179147 + ID_B1 SINE B4 73 224 0 1 916 201 329 14 0 chr4 43450974 43451044 -112179076 + GA-rich Low_complexity Low_complexity 3 73 0 1 916 2439 82 22 0 chr4 43451162 43451480 -112178640 + ORR1A2 LTR MaLR 3 327 0 1 916 378 0 0 0 chr4 43452110 43452152 -112177968 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 916 353 242 158 32 chr4 43452166 43452324 -112177796 - MTEa LTR MaLR -199 180 3 1 916 256 321 94 0 chr4 43452433 43452539 -112177581 - PB1D7 SINE Alu 0 120 5 1 916 1270 178 5 19 chr4 43452566 43452778 -112177342 + B3 SINE B2 5 213 -3 1 916 519 169 13 2 chr4 43452951 43453044 -112177076 - PB1D10 SINE Alu -4 123 22 1 916 221 250 143 0 chr4 43453004 43453060 -112177060 - B4A SINE B4 -146 146 83 1 916 324 0 0 0 chr4 43453090 43453126 -112176994 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 916 340 357 8 25 chr4 43453314 43453432 -112176688 - RSINE1 SINE B4 -6 159 44 1 916 1711 206 95 26 chr4 43453458 43453951 -112176169 - RLTR11A2 LTR ERVK 0 527 1 1 916 441 0 0 0 chr4 43454325 43454374 -112175746 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 916 324 242 112 31 chr4 43454682 43454780 -112175340 + PB1D10 SINE Alu 2 107 -10 1 916 23 0 0 0 chr4 43455959 43455982 -112174138 + GC_rich Low_complexity Low_complexity 1 23 0 1 916 43 64 0 0 chr4 43456022 43456100 -112174020 + GC_rich Low_complexity Low_complexity 1 78 0 1 916 24 0 0 0 chr4 43456136 43456160 -112173960 + GC_rich Low_complexity Low_complexity 1 24 0 1 916 38 81 0 0 chr4 43456318 43456405 -112173715 + GC_rich Low_complexity Low_complexity 1 87 0 1 916 326 281 90 35 chr4 43457147 43457291 -112172829 + MER3 DNA MER1_type 29 180 -29 1 916 395 245 179 0 chr4 43459142 43459248 -112170872 + RSINE1 SINE B4 2 126 -39 1 916 181 259 74 0 chr4 43461270 43461324 -112168796 - L2 LINE L2 -3273 146 89 1 916 242 250 0 111 chr4 43461461 43461524 -112168596 + B1_Mus2 SINE Alu 1 56 -91 1 916 501 175 46 55 chr4 43461733 43461842 -112168278 - PB1D10 SINE Alu 0 117 10 1 916 1091 38 0 0 chr4 43461866 43461998 -112168122 - B1_Mus1 SINE Alu -9 139 8 1 916 574 257 44 75 chr4 43461998 43462026 -112168094 - B4 SINE B4 -75 217 63 1 916 374 207 207 0 chr4 43462063 43462174 -112167946 + RSINE1 SINE B4 4 137 -28 1 916 345 47 0 0 chr4 43463362 43463405 -112166715 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 1 916 464 106 12 0 chr4 43463670 43463755 -112166365 + (TC)n Simple_repeat Simple_repeat 2 87 0 1 916 293 317 73 0 chr4 43463940 43464022 -112166098 - PB1D10 SINE Alu -29 88 1 1 916 1676 153 162 0 chr4 43464279 43464600 -112165520 + ORR1D1 LTR MaLR 2 374 0 1 916 419 265 10 0 chr4 43465534 43465632 -112164488 + PB1D10 SINE Alu 2 100 -17 1 916 687 163 259 0 chr4 43468387 43468553 -112161567 + B3 SINE B2 3 211 -5 1 916 687 238 0 33 chr4 43468784 43468936 -112161184 + B1_Mur1 SINE Alu 2 148 -1 1 916 237 128 0 0 chr4 43468965 43469012 -112161108 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 1 916 1676 26 5 0 chr4 43469191 43469383 -112160737 + B2_Mm1t SINE B2 1 193 0 1 916 180 0 0 0 chr4 43469705 43469725 -112160395 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 916 465 19 0 0 chr4 43469725 43469778 -112160342 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 916 773 64 190 128 chr4 43470860 43471039 -112159081 + B2_Mm2 SINE B2 2 191 -4 1 916 2708 164 40 9 chr4 43471111 43471566 -112158554 + RMER20B LTR ERVK 1 469 -158 1 916 449 312 82 57 chr4 43471571 43471887 -112158233 + MLT1D LTR MaLR 55 378 -127 1 916 983 149 0 13 chr4 43471930 43472080 -112158040 - B1_Mus1 SINE Alu 0 148 1 1 916 473 222 91 0 chr4 43472185 43472284 -112157836 + ID_B1 SINE B4 105 212 -12 1 916 207 0 0 0 chr4 43472419 43472442 -112157678 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 916 235 211 105 0 chr4 43472443 43472498 -112157622 - B1_Mur2 SINE Alu -9 140 80 1 916 882 164 114 66 chr4 43472498 43472726 -112157394 + RMER4B LTR ERVK 1 239 -346 1 916 198 209 0 75 chr4 43472749 43472935 -112157185 + C-rich Low_complexity Low_complexity 5 176 0 1 916 423 215 84 10 chr4 43473069 43473248 -112156872 + RMER4B LTR ERVK 343 569 -16 1 916 324 0 0 0 chr4 43473248 43473284 -112156836 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 916 436 277 69 33 chr4 43473298 43473480 -112156640 + MurERV4-int LTR ERVK 3 209 -5051 1 916 6488 235 40 40 chr4 43473482 43475221 -112154899 + MurERV4-int LTR ERVK 188 1926 -3334 1 916 2301 204 35 47 chr4 43475265 43475438 -112154682 + MYSERV6-int LTR ERVK 7813 7922 -1037 1 916 1293 40 0 0 chr4 43475438 43475586 -112154534 - B1_Mus1 SINE Alu 0 148 1 1 916 2301 218 48 92 chr4 43475586 43476057 -112154063 + MYSERV6-int LTR ERVK 7923 8359 -600 1 916 239 114 23 0 chr4 43476057 43476101 -112154019 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 916 2301 218 48 92 chr4 43476101 43476397 -112153723 + MYSERV6-int LTR ERVK 8360 8642 -317 1 916 1323 246 91 13 chr4 43476397 43476796 -112153324 + RMER19C LTR ERVK 227 611 0 1 916 513 197 67 29 chr4 43476796 43476957 -112153163 + RMER4B LTR ERVK 353 561 -24 1 916 1690 21 0 10 chr4 43476962 43477156 -112152964 + B2_Mm1a SINE B2 1 192 -1 1 916 244 179 0 138 chr4 43477171 43477236 -112152884 - 4.5SRNA scRNA scRNA -1 93 38 1 916 609 191 0 0 chr4 43477181 43477275 -112152845 - B1_Mur3 SINE Alu -55 94 1 1 916 666 122 0 0 chr4 43477440 43477547 -112152573 + (TC)n Simple_repeat Simple_repeat 1 107 0 1 916 736 165 15 30 chr4 43477584 43477715 -112152405 - B1_Mur2 SINE Alu 0 149 21 1 916 204 306 143 16 chr4 43477853 43477979 -112152141 + L3 LINE CR1 3501 3642 -847 1 916 367 263 119 0 chr4 43478013 43478131 -112151989 + B1_Mur2 SINE Alu 13 144 -5 1 916 202 175 0 48 chr4 43478131 43478173 -112151947 + GA-rich Low_complexity Low_complexity 3 42 0 1 916 534 248 68 0 chr4 43478347 43478464 -112151656 + B1_Mur2 SINE Alu 1 125 -24 1 916 504 191 176 47 chr4 43478464 43478612 -112151508 - URR1B DNA MER1_type 0 225 59 1 916 548 196 0 30 chr4 43479999 43480099 -112150021 - PB1D10 SINE Alu -9 108 12 1 916 315 0 0 0 chr4 43480099 43480134 -112149986 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 916 3825 152 145 66 chr4 43480224 43481060 -112149060 - RMER19B LTR ERVK 0 902 1 1 916 785 135 175 25 chr4 43481188 43481348 -112148772 - RMER19B LTR ERVK -166 736 553 1 916 188 67 33 0 chr4 43481433 43481463 -112148657 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 916 546 57 0 0 chr4 43481902 43481972 -112148148 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 916 347 121 17 33 chr4 43481972 43482032 -112148088 - B1_Mus2 SINE Alu 0 147 89 1 916 225 0 0 0 chr4 43482209 43482234 -112147886 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 916 1418 62 6 0 chr4 43482234 43482411 -112147709 - B2_Mm1a SINE B2 -14 179 2 1 916 356 145 171 13 chr4 43482413 43482524 -112147596 - B2_Mm2 SINE B2 0 195 47 1 916 1306 102 11 0 chr4 43482571 43482747 -112147373 - B2_Mm1t SINE B2 -14 179 2 1 916 285 291 244 0 chr4 43482760 43482887 -112147233 + RMER15 LTR ERVL 406 563 -12 1 916 338 302 43 8 chr4 43482932 43483049 -112147071 + RMER15-int LTR ERVL 210 330 -4669 1 916 1023 245 102 21 chr4 43483308 43483592 -112146528 - MTD LTR MaLR -108 311 5 1 916 469 296 105 14 chr4 43483865 43484074 -112146046 + RMER15 LTR ERVL 346 573 -2 1 916 514 161 0 12 chr4 43484104 43484186 -112145934 - ID4 SINE ID -1 82 2 1 916 352 313 63 53 chr4 43484209 43484288 -112145832 - B3A SINE B2 -6 192 2 1 916 460 231 91 18 chr4 43484288 43484398 -112145722 - B4A SINE B4 -173 119 2 1 916 559 240 0 98 chr4 43484507 43484650 -112145470 + RSINE1 SINE B4 6 134 -31 1 916 1295 80 3 3 chr4 43484700 43485037 -112145083 + (TG)n Simple_repeat Simple_repeat 1 337 0 1 916 1105 228 5 0 chr4 43485045 43485247 -112144873 + B3 SINE B2 14 216 0 1 916 1495 45 17 0 chr4 43485259 43485436 -112144684 + B2_Mm2 SINE B2 2 181 -14 1 916 23 0 0 0 chr4 43485459 43485482 -112144638 + AT_rich Low_complexity Low_complexity 1 23 0 1 916 384 229 9 30 chr4 43485788 43485899 -112144221 + PB1D10 SINE Alu 12 120 0 1 916 342 197 45 0 chr4 43487196 43487262 -112142858 - B1_Mur4 SINE Alu -81 69 1 1 916 1503 174 160 26 chr4 43487712 43488070 -112142050 + MTD LTR MaLR 8 405 -14 1 916 180 0 0 0 chr4 43488160 43488180 -112141940 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 916 256 331 145 13 chr4 43488255 43488414 -112141706 + L3 LINE CR1 4212 4391 -98 1 916 548 200 122 24 chr4 43488536 43488700 -112141420 + B3A SINE B2 19 198 0 1 916 320 259 49 12 chr4 43489146 43489228 -112140892 + B1F2 SINE Alu 21 105 -44 1 916 231 61 0 0 chr4 43489377 43489410 -112140710 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 916 1295 20 7 0 chr4 43489416 43489562 -112140558 - B1_Mus1 SINE Alu 0 148 2 1 916 423 0 0 0 chr4 43489965 43490012 -112140108 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 916 574 195 0 259 chr4 43490229 43490331 -112139789 + B1_Mur3 SINE Alu 1 62 -87 1 916 1282 34 0 0 chr4 43490331 43490478 -112139642 - B1_Mus2 SINE Alu 0 147 1 1 916 574 195 0 259 chr4 43490478 43490576 -112139544 + B1_Mur3 SINE Alu 63 149 0 1 916 927 158 3 33 chr4 43490589 43490873 -112139247 + GA-rich Low_complexity Low_complexity 1 275 0 1 916 212 217 44 118 chr4 43490881 43490949 -112139171 + ID4 SINE ID 13 75 -8 1 916 249 57 0 0 chr4 43491055 43491090 -112139030 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 1 916 1171 48 0 58 chr4 43491741 43491897 -112138223 - B1_Mm SINE Alu 0 147 1 1 916 335 23 0 22 chr4 43492708 43492753 -112137367 + (TTC)n Simple_repeat Simple_repeat 2 45 0 1 916 1149 56 28 0 chr4 43492753 43492896 -112137224 - B1_Mus2 SINE Alu 0 147 1 1 916 282 95 0 0 chr4 43492906 43492948 -112137172 + (T)n Simple_repeat Simple_repeat 1 42 0 1 916 902 169 111 5 chr4 43492960 43493150 -112136970 + B3 SINE B2 1 210 -6 1 916 916 178 122 30 chr4 43493174 43493371 -112136749 + B3 SINE B2 1 215 -1 1 916 585 278 122 15 chr4 43493385 43493582 -112136538 + B4 SINE B4 2 219 -73 1 916 288 299 91 0 chr4 43493632 43493709 -112136411 + RSINE1 SINE B4 24 107 -58 1 916 381 43 0 0 chr4 43493874 43493921 -112136199 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 916 222 311 131 37 chr4 43493937 43494044 -112136076 - MIR SINE MIR -111 151 35 1 916 1289 61 12 0 chr4 43494230 43494395 -112135725 + B2_Mm2 SINE B2 1 167 -28 1 916 1128 73 0 0 chr4 43494395 43494546 -112135574 + (GGAGAA)n Simple_repeat Simple_repeat 3 153 0 1 916 198 0 0 0 chr4 43494933 43494955 -112135165 + (T)n Simple_repeat Simple_repeat 1 22 0 1 916 478 200 111 28 chr4 43496935 43497043 -112133077 - ID_B1 SINE B4 -26 198 82 1 916 887 277 87 0 chr4 43497306 43497559 -112132561 + B4A SINE B4 1 275 -17 1 916 387 0 0 0 chr4 43497560 43497603 -112132517 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 916 1064 119 62 11 chr4 43497664 43497842 -112132278 - B2_Mm2 SINE B2 -7 188 2 1 916 742 215 7 7 chr4 43497988 43498124 -112131996 + B1_Mur1 SINE Alu 1 136 -13 1 916 270 220 17 0 chr4 43498179 43498238 -112131882 + tRNA-Ala-GCY_ tRNA tRNA 9 68 -7 1 916 947 238 0 0 chr4 43498271 43498460 -112131660 + B3 SINE B2 6 194 -22 1 916 926 239 0 61 chr4 43498462 43498494 -112131626 + B3 SINE B2 13 42 -174 1 916 1235 61 0 0 chr4 43498494 43498642 -112131478 + B1_Mus1 SINE Alu 1 148 0 1 916 926 239 0 61 chr4 43498642 43498823 -112131297 + B3 SINE B2 43 213 -3 1 916 1354 115 0 5 chr4 43498834 43499026 -112131094 + B2_Mm2 SINE B2 2 192 -3 1 916 38 75 0 0 chr4 43499052 43499132 -112130988 + AT_rich Low_complexity Low_complexity 1 80 0 1 916 189 94 0 0 chr4 43499137 43499169 -112130951 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 916 227 224 0 94 chr4 43499179 43499243 -112130877 + ID4_ SINE ID 26 83 0 1 916 501 281 60 78 chr4 43499469 43499482 -112130638 - B2_Mm2 SINE B2 -32 163 151 1 916 270 0 0 0 chr4 43499482 43499512 -112130608 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 916 725 252 18 6 chr4 43499512 43499664 -112130456 - B3A SINE B2 -45 150 1 1 916 758 259 136 10 chr4 43500188 43500387 -112129733 + ID_B1 SINE B4 1 224 0 1 916 369 262 93 0 chr4 43500455 43500562 -112129558 + B1F SINE Alu 33 149 0 2 916 326 123 18 0 chr4 43500573 43500630 -112129490 + (GGA)n Simple_repeat Simple_repeat 3 60 0 3 916 1190 87 21 11 chr4 43500630 43500817 -112129303 + B2_Mm2 SINE B2 7 195 0 4 916 2009 232 87 30 chr4 43500817 43501436 -112128684 + Lx5 LINE L1 5796 6677 -783 5 916 2416 268 83 58 chr4 43501683 43502292 -112127828 + Lx6 LINE L1 6059 7024 -436 6 916 1172 58 0 0 chr4 43502292 43502429 -112127691 + B1_Mus1 SINE Alu 2 138 -10 7 916 467 17 17 0 chr4 43502429 43502489 -112127631 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 8 916 2416 208 105 16 chr4 43502489 43502891 -112127229 + Lx6 LINE L1 7025 7459 -1 6 916 742 96 73 35 chr4 43502905 43503048 -112127072 - B1_Mur4 SINE Alu 0 150 5 9 916 301 250 37 24 chr4 43503158 43503240 -112126880 + PB1D7 SINE Alu 38 120 0 1 916 743 149 18 42 chr4 43503317 43503485 -112126635 - RLTR9F LTR ERVK -4 411 248 1 916 555 101 0 0 chr4 43503478 43503557 -112126563 - RLTR9F LTR ERVK -336 79 1 1 916 422 300 14 54 chr4 43503605 43503753 -112126367 + ID_B1 SINE B4 81 222 -2 1 916 213 39 0 0 chr4 43503900 43503926 -112126194 + (CCCTG)n Simple_repeat Simple_repeat 2 27 0 1 916 255 79 0 0 chr4 43504255 43504293 -112125827 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1 916 5651 20 0 8 chr4 43504303 43504920 -112125200 - L1Md_A LINE L1 0 6582 5968 1 916 606 191 34 17 chr4 43504920 43505037 -112125083 - PB1D9 SINE Alu 0 120 2 1 916 5651 20 0 8 chr4 43505037 43505060 -112125060 - L1Md_A LINE L1 -615 5967 5947 1 916 483 227 31 0 chr4 43505069 43505166 -112124954 + ID_B1 SINE B4 107 206 -18 1 916 1186 35 14 0 chr4 43505481 43505625 -112124495 + B1_Mus2 SINE Alu 2 147 0 1 916 266 259 58 109 chr4 43507187 43507262 -112122858 + MT2B LTR ERVL 88 235 -366 1 916 404 167 0 37 chr4 43507262 43507343 -112122777 + B1_Mur3 SINE Alu 3 80 -69 2 916 312 247 111 11 chr4 43507699 43507789 -112122331 + PB1D10 SINE Alu 10 108 -9 2 916 343 233 47 0 chr4 43509055 43509141 -112120979 + PB1D10 SINE Alu 27 116 -1 2 916 447 248 89 0 chr4 43509152 43509253 -112120867 + PB1D10 SINE Alu 1 110 -7 2 916 401 221 121 26 chr4 43510285 43510401 -112119719 - RSINE1 SINE B4 -36 129 3 2 916 257 279 191 18 chr4 43511932 43512100 -112118020 - MIRc SINE MIR -58 210 14 2 916 636 243 127 0 chr4 43512948 43513137 -112116983 - ID_B1 SINE B4 -10 214 2 2 916 25 0 0 0 chr4 43513139 43513164 -112116956 + AT_rich Low_complexity Low_complexity 1 25 0 2 916 552 100 0 0 chr4 43513290 43513370 -112116750 + (TCC)n Simple_repeat Simple_repeat 2 81 0 2 916 495 250 9 0 chr4 43513562 43513670 -112116450 - B3A SINE B2 -83 115 7 2 916 28 0 0 0 chr4 43513691 43513719 -112116401 + AT_rich Low_complexity Low_complexity 1 28 0 3 916 777 247 112 0 chr4 43513726 43513896 -112116224 + B3 SINE B2 1 189 -27 3 916 423 0 0 0 chr4 43513896 43513943 -112116177 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 916 288 0 0 0 chr4 43513943 43513974 -112116146 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 916 358 243 129 124 chr4 43513974 43513995 -112116125 + B2_Mm2 SINE B2 177 193 -2 3 916 534 239 62 0 chr4 43514622 43514735 -112115385 + PB1D7 SINE Alu 1 120 0 3 916 452 186 0 0 chr4 43514839 43514925 -112115195 + B3 SINE B2 2 87 -129 3 916 766 153 8 8 chr4 43515362 43515494 -112114626 - B1_Mur1 SINE Alu -8 141 10 3 916 342 308 49 82 chr4 43515483 43515667 -112114453 + MLT1C LTR MaLR 281 458 -9 3 916 990 139 7 0 chr4 43515752 43515896 -112114224 - B1_Mur4 SINE Alu -2 148 4 3 917 233 277 119 93 chr4 43516842 43516993 -112113127 + MT2B LTR ERVL 124 278 -323 4 917 444 262 45 90 chr4 43516865 43517020 -112113100 + ID_B1 SINE B4 77 224 0 4 917 577 218 73 22 chr4 43516885 43517021 -112113099 + B1F SINE Alu 6 148 -1 4 917 215 280 0 20 chr4 43517337 43517388 -112112732 + RSINE1 SINE B4 3 52 -113 4 917 416 236 0 3 chr4 43517605 43517703 -112112417 + RSINE1 SINE B4 49 129 -36 4 917 925 169 200 11 chr4 43517829 43518009 -112112111 + B3 SINE B2 2 215 -1 4 917 778 253 12 24 chr4 43518565 43518731 -112111389 - RSINE1 SINE B4 0 165 2 4 917 262 360 81 0 chr4 43518885 43518996 -112111124 + L2a LINE L2 3289 3408 -18 4 917 275 304 0 12 chr4 43519087 43519167 -112110953 + ID4_ SINE ID 5 83 0 4 917 297 0 0 0 chr4 43520484 43520517 -112109603 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 917 226 24 0 89 chr4 43520540 43520585 -112109535 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 917 343 248 9 62 chr4 43520711 43520823 -112109297 - PB1D10 SINE Alu -11 106 1 5 917 279 0 0 0 chr4 43522717 43522748 -112107372 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 917 477 0 0 0 chr4 43522749 43522802 -112107318 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 917 394 187 0 26 chr4 43523330 43523407 -112106713 + B1_Mur1 SINE Alu 75 149 0 5 917 1197 48 7 0 chr4 43523541 43523687 -112106433 - B1_Mus2 SINE Alu 0 147 1 5 917 1340 85 31 16 chr4 43523800 43523991 -112106129 + B2_Mm2 SINE B2 2 195 0 5 917 227 268 113 0 chr4 43523993 43524064 -112106056 + ID4 SINE ID 3 81 -2 5 917 824 175 0 14 chr4 43526155 43526300 -112103820 - B1_Mus1 SINE Alu 0 148 6 5 917 486 292 96 30 chr4 43526164 43526362 -112103758 - ID_B1 SINE B4 -7 217 7 5 917 350 257 115 0 chr4 43526367 43526405 -112103715 - B1F SINE Alu -21 128 81 5 917 313 253 26 26 chr4 43526405 43526482 -112103638 - ID4 SINE ID -6 77 1 6 917 374 230 6 0 chr4 43526482 43526556 -112103564 - PB1D10 SINE Alu -69 80 3 5 917 25 0 0 0 chr4 43526563 43526588 -112103532 + AT_rich Low_complexity Low_complexity 1 25 0 6 917 456 343 71 59 chr4 43526640 43526965 -112103155 - MLT1D LTR MaLR 0 505 186 6 917 361 289 26 17 chr4 43526965 43527081 -112103039 - PB1D10 SINE Alu 0 117 1 6 917 456 343 71 59 chr4 43527081 43527232 -112102888 - MLT1D LTR MaLR -320 185 24 6 917 266 246 0 40 chr4 43528877 43528953 -112101167 + G-rich Low_complexity Low_complexity 3 75 0 6 917 416 175 0 101 chr4 43529409 43529498 -112100622 + ID4_ SINE ID 4 83 0 6 917 1361 62 73 0 chr4 43529506 43529685 -112100435 + B2_Mm2 SINE B2 1 192 -3 6 917 301 246 27 14 chr4 43529712 43529786 -112100334 + ID4 SINE ID 1 75 -8 6 917 224 310 52 46 chr4 43529894 43530003 -112100117 + PB1D7 SINE Alu 12 120 0 6 917 478 280 144 78 chr4 43530123 43530394 -112099726 - B4 SINE B4 -2 290 2 6 917 709 84 65 149 chr4 43530447 43530601 -112099519 + B2_Mm2 SINE B2 1 141 -54 7 917 339 25 0 0 chr4 43530601 43530641 -112099479 + (TATG)n Simple_repeat Simple_repeat 2 41 0 7 917 272 211 0 81 chr4 43530644 43530706 -112099414 + PB1D9 SINE Alu 55 111 -9 7 917 1189 188 39 0 chr4 43530708 43530916 -112099204 - B3 SINE B2 0 216 1 7 917 442 304 28 55 chr4 43533248 43533429 -112096691 + MIR SINE MIR 6 181 -81 7 917 493 162 403 0 chr4 43533562 43533716 -112096404 - B3 SINE B2 0 216 1 7 917 216 0 0 0 chr4 43535750 43535774 -112094346 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 917 180 0 0 0 chr4 43535774 43535793 -112094327 + (CG)n Simple_repeat Simple_repeat 2 21 0 7 917 393 147 0 0 chr4 43537967 43538062 -112092058 + (TC)n Simple_repeat Simple_repeat 2 96 0 7 917 372 350 73 70 chr4 43538220 43538549 -112091571 + L2c LINE L2 2921 3250 -137 7 917 498 238 24 30 chr4 43538734 43538899 -112091221 - Charlie1a DNA MER1_type -8 1447 1284 8 917 817 256 48 5 chr4 43538906 43539114 -112091006 + ID_B1 SINE B4 7 223 -1 8 917 1378 60 49 0 chr4 43539185 43539368 -112090752 + B2_Mm2 SINE B2 3 194 -1 8 917 203 61 30 0 chr4 43539407 43539440 -112090680 + (TATG)n Simple_repeat Simple_repeat 2 35 0 8 917 947 128 0 0 chr4 43539444 43539585 -112090535 - B1_Mur4 SINE Alu -8 142 2 8 917 594 41 0 0 chr4 43539686 43539759 -112090361 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 8 917 536 143 305 0 chr4 43539759 43539864 -112090256 - B1_Mur1 SINE Alu -8 141 5 8 917 1296 273 68 49 chr4 43539902 43540414 -112089706 - Charlie1a DNA MER1_type -600 855 334 8 917 612 275 67 10 chr4 43540347 43540542 -112089578 + ID_B1 SINE B4 13 218 -6 8 917 747 185 224 12 chr4 43540614 43540784 -112089336 + B3 SINE B2 1 206 -10 8 917 612 254 49 107 chr4 43540815 43541040 -112089080 + B3 SINE B2 2 213 -3 8 917 543 230 0 9 chr4 43541040 43541154 -112088966 + B1_Mur1 SINE Alu 32 144 -5 9 917 872 254 24 28 chr4 43541167 43541378 -112088742 + ID_B1 SINE B4 2 211 -13 9 917 373 261 230 132 chr4 43541395 43541490 -112088630 - B4A SINE B4 0 292 221 9 917 1413 95 16 10 chr4 43541490 43541682 -112088438 - B2_Mm2 SINE B2 -1 194 2 9 917 373 261 230 132 chr4 43541682 43541786 -112088334 - B4A SINE B4 -72 220 103 9 917 360 0 0 0 chr4 43541786 43541826 -112088294 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 917 373 261 230 132 chr4 43541826 43541890 -112088230 - B4A SINE B4 -190 102 3 9 917 599 269 192 21 chr4 43541896 43542135 -112087985 + B4A SINE B4 6 285 -7 9 917 253 307 95 38 chr4 43542231 43542336 -112087784 - PB1D10 SINE Alu -1 116 6 9 917 906 87 0 0 chr4 43542354 43542481 -112087639 - B1_Mur3 SINE Alu 0 149 23 9 917 253 184 3 18 chr4 43542566 43542633 -112087487 + B1_Mur1 SINE Alu 54 149 0 9 917 255 217 0 0 chr4 43542633 43542702 -112087418 + A-rich Low_complexity Low_complexity 1 69 0 9 917 361 342 107 0 chr4 43542734 43542930 -112087190 - Charlie1a DNA MER1_type -1236 219 3 8 917 597 254 90 6 chr4 43543897 43544075 -112086045 - B3A SINE B2 -4 194 2 1 917 1033 262 48 48 chr4 43545329 43545638 -112084482 + MTE2a LTR MaLR 63 371 -8 1 917 261 234 16 0 chr4 43547051 43547115 -112083005 + GA-rich Low_complexity Low_complexity 4 68 0 1 917 423 0 0 0 chr4 43547212 43547259 -112082861 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 1 917 1489 236 68 35 chr4 43547736 43548132 -112081988 - Lx6 LINE L1 -27 7433 7025 1 917 466 238 88 27 chr4 43549641 43549788 -112080332 + RSINE1 SINE B4 9 164 -1 1 917 1167 75 7 0 chr4 43549824 43549971 -112080149 + B1_Mus1 SINE Alu 1 148 0 1 917 288 130 0 0 chr4 43549971 43550017 -112080103 + (A)n Simple_repeat Simple_repeat 1 46 0 1 917 181 288 23 70 chr4 43550608 43550694 -112079426 - L2 LINE L2 -2085 1334 1253 1 917 259 250 59 0 chr4 43551740 43551808 -112078312 - tRNA-Ala-GCY_ tRNA tRNA -2 73 2 1 917 373 279 115 0 chr4 43553720 43553824 -112076296 + PB1D10 SINE Alu 2 117 0 1 917 268 219 94 0 chr4 43554244 43554308 -112075812 + B1F2 SINE Alu 46 115 -34 1 917 918 222 64 0 chr4 43554562 43554765 -112075355 + B3 SINE B2 1 216 0 1 917 698 153 76 0 chr4 43554901 43555032 -112075088 - B1_Mus1 SINE Alu 0 148 8 1 917 681 192 5 176 chr4 43563301 43563522 -112066598 - URR1A DNA MER1_type 0 226 44 1 917 484 238 38 81 chr4 43563574 43563734 -112066386 + B3A SINE B2 2 154 -44 1 917 311 117 0 48 chr4 43564214 43564277 -112065843 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 1 917 1356 85 0 6 chr4 43564278 43564455 -112065665 - B2_Mm2 SINE B2 -18 177 2 1 917 1577 58 16 0 chr4 43564862 43565052 -112065068 - B2_Mm2 SINE B2 -2 193 1 1 917 402 288 42 8 chr4 43565070 43565189 -112064931 - B1F1 SINE Alu -25 124 2 1 917 240 319 14 14 chr4 43565224 43565294 -112064826 - ID4 SINE ID -2 81 12 1 917 1141 227 112 25 chr4 43565301 43565639 -112064481 + ORR1D2 LTR MaLR 2 360 -14 1 917 599 233 0 24 chr4 43566830 43566953 -112063167 + PB1D7 SINE Alu 1 120 0 1 917 849 265 66 13 chr4 43572232 43572458 -112057662 - MIRb SINE MIR -11 257 20 1 917 243 275 33 60 chr4 43572459 43572610 -112057510 - L2b LINE L2 -281 3094 2948 1 917 360 279 0 25 chr4 43576722 43576803 -112053317 + B1F2 SINE Alu 1 79 -70 1 917 250 247 27 0 chr4 43576919 43576992 -112053128 + ID_B1 SINE B4 129 203 -21 1 917 427 294 21 42 chr4 43577223 43577365 -112052755 - ID_B1 SINE B4 -4 220 82 1 917 576 250 21 7 chr4 43577561 43577702 -112052418 - ID_B1 SINE B4 -1 223 81 1 917 877 226 82 34 chr4 43577726 43577932 -112052188 + B3 SINE B2 1 216 0 1 917 190 322 100 0 chr4 43577967 43578057 -112052063 + L3 LINE CR1 4363 4461 -28 1 917 233 299 35 53 chr4 43578336 43578449 -112051671 - MER110A LTR ERV1 -169 299 189 1 917 483 147 83 10 chr4 43585134 43585230 -112044890 - PB1D10 SINE Alu 0 117 15 1 917 301 292 123 7 chr4 43585304 43585459 -112044661 + MIRb SINE MIR 78 250 -18 1 917 558 285 0 40 chr4 43585929 43586079 -112044041 + RSINE1 SINE B4 3 146 -19 1 917 349 342 58 8 chr4 43586106 43586227 -112043893 - RSINE1 SINE B4 -35 130 4 1 917 380 268 0 23 chr4 43586235 43586323 -112043797 - PB1D10 SINE Alu -20 97 12 1 917 377 277 32 0 chr4 43587121 43587215 -112042905 + PB1D10 SINE Alu 18 114 -3 1 917 445 214 231 0 chr4 43587674 43587791 -112042329 + B1F SINE Alu 5 148 -1 1 917 287 333 40 0 chr4 43588090 43588189 -112041931 + MIRc SINE MIR 117 219 -49 1 917 1287 109 54 0 chr4 43589143 43589327 -112040793 - B2_Mm2 SINE B2 0 195 2 1 917 1100 264 97 10 chr4 43589328 43589638 -112040482 + MTE2b LTR MaLR 3 339 -40 1 917 382 279 0 0 chr4 43590171 43590257 -112039863 - PB1 SINE Alu -20 107 22 1 917 180 0 0 0 chr4 43590597 43590617 -112039503 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 1 917 270 0 0 0 chr4 43592898 43592928 -112037192 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 917 558 137 15 127 chr4 43594963 43595097 -112035023 - B1_Mur1 SINE Alu 0 149 31 1 917 434 286 81 7 chr4 43595134 43595282 -112034838 - RSINE1 SINE B4 -6 159 1 1 917 253 219 79 173 chr4 43595349 43595476 -112034644 - B1F1 SINE Alu -1 116 2 1 917 274 196 133 16 chr4 43595411 43595494 -112034626 - ID_B1 SINE B4 -67 157 70 1 917 1112 99 138 20 chr4 43595494 43595689 -112034431 - URR1B DNA MER1_type 0 225 8 1 917 248 293 152 16 chr4 43598005 43598130 -112031990 + MIR SINE MIR 29 170 -92 1 917 217 132 0 0 chr4 43598445 43598483 -112031637 + (C)n Simple_repeat Simple_repeat 1 38 0 1 917 322 192 101 13 chr4 43600230 43600309 -112029811 + PB1D7 SINE Alu 28 113 -7 1 917 473 247 144 17 chr4 43600412 43600593 -112029527 + B3 SINE B2 1 204 -12 1 917 228 310 0 53 chr4 43600630 43600705 -112029415 + PB1 SINE Alu 3 73 -54 1 917 183 42 0 0 chr4 43601788 43601812 -112028308 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 917 662 252 142 15 chr4 43601824 43602021 -112028099 + ID_B1 SINE B4 3 224 0 1 917 315 71 0 0 chr4 43602952 43602994 -112027126 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 917 969 111 144 0 chr4 43602995 43603162 -112026958 - Lx3C LINE L1 -2 6974 6793 1 917 198 0 0 0 chr4 43603162 43603184 -112026936 + (CAGAC)n Simple_repeat Simple_repeat 2 23 0 1 917 969 111 144 0 chr4 43603184 43603197 -112026923 - Lx3C LINE L1 -184 6792 6770 1 917 402 21 0 0 chr4 43603197 43603244 -112026876 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 917 4839 108 33 16 chr4 43603249 43604419 -112025701 - Lx3C LINE L1 -626 6350 5170 1 917 312 123 29 44 chr4 43604438 43604506 -112025614 - Lx8 LINE L1 0 7473 7407 1 917 370 274 12 126 chr4 43604779 43604795 -112025325 - B1F2 SINE Alu 0 149 137 1 917 435 19 0 0 chr4 43604795 43604847 -112025273 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1 917 370 274 12 126 chr4 43604847 43604997 -112025123 - B1F2 SINE Alu -13 136 2 1 917 648 273 124 0 chr4 43605008 43605202 -112024918 - B4A SINE B4 -73 219 2 1 917 1070 219 9 9 chr4 43605233 43605445 -112024675 - B3 SINE B2 -4 212 1 1 917 1003 225 29 0 chr4 43605678 43605887 -112024233 + B3 SINE B2 2 216 0 1 917 559 237 57 7 chr4 43606028 43606168 -112023952 + B1F SINE Alu 2 148 -1 1 917 205 333 0 42 chr4 43606211 43606283 -112023837 + MER5A DNA MER1_type 72 140 -49 1 917 407 248 132 33 chr4 43607078 43607199 -112022921 + B1F SINE Alu 1 133 -16 1 917 459 35 0 0 chr4 43607199 43607256 -112022864 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 917 213 65 0 0 chr4 43607449 43607480 -112022640 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 917 514 143 152 51 chr4 43607774 43607892 -112022228 - B1_Mur1 SINE Alu -1 148 19 1 917 576 78 0 0 chr4 43607940 43608017 -112022103 - B1_Mus2 SINE Alu -12 135 59 1 917 277 109 36 0 chr4 43608017 43608072 -112022048 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 917 413 269 46 0 chr4 43608340 43608448 -112021672 - RSINE1 SINE B4 -10 155 43 1 917 3461 35 2 5 chr4 43608793 43609190 -112020930 - MTA_Mm LTR MaLR 0 396 1 1 917 221 287 123 0 chr4 43609436 43609623 -112020497 + (TCTCTG)n Simple_repeat Simple_repeat 1 210 0 1 917 473 84 14 0 chr4 43610003 43610074 -112020046 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 917 732 238 27 0 chr4 43610080 43610227 -112019893 - RSINE1 SINE B4 -10 155 5 1 917 492 114 0 12 chr4 43610649 43610729 -112019391 + B1_Mus2 SINE Alu 51 129 -18 1 917 325 262 26 88 chr4 43611411 43611524 -112018596 + PB1D10 SINE Alu 2 107 -10 1 917 243 297 32 121 chr4 43611741 43611898 -112018222 - RSINE1 SINE B4 -21 144 2 1 917 282 181 122 183 chr4 43612171 43612286 -112017834 + B3A SINE B2 7 114 -84 1 917 315 0 0 162 chr4 43612286 43612453 -112017667 + (CTCTG)n Simple_repeat Simple_repeat 3 142 0 1 917 289 330 0 0 chr4 43612420 43612511 -112017609 + C-rich Low_complexity Low_complexity 90 180 0 1 917 285 268 0 0 chr4 43612512 43612583 -112017537 + B3A SINE B2 95 165 -33 1 917 339 150 0 0 chr4 43612604 43612664 -112017456 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 917 212 246 61 15 chr4 43613461 43613527 -112016593 + B1F SINE Alu 79 147 -2 1 917 552 269 22 0 chr4 43613782 43613916 -112016204 - B1F SINE Alu -10 139 3 1 917 5099 162 86 7 chr4 43614104 43615088 -112015032 - Lx5 LINE L1 0 7050 5989 1 917 1942 105 60 13 chr4 43615082 43615399 -112014721 - L1_Mur2 LINE L1 -763 5114 4783 1 917 2695 79 65 5 chr4 43615399 43615782 -112014338 + RLTR9B LTR ERVK 32 437 0 1 917 2035 123 3 0 chr4 43615782 43616106 -112014014 - L1_Mur2 LINE L1 -1111 4766 4442 1 917 4240 118 38 3 chr4 43616106 43616962 -112013158 + Lx5 LINE L1 5166 6056 -994 1 917 868 121 28 70 chr4 43616965 43617107 -112013013 + B1_Mur4 SINE Alu 2 137 -13 1 917 31 0 0 24 chr4 43617155 43617168 -112012952 + AT_rich Low_complexity Low_complexity 1 13 0 1 917 482 252 17 9 chr4 43617168 43617284 -112012836 - PB1D10 SINE Alu 0 117 1 1 917 31 0 0 24 chr4 43617284 43617312 -112012808 + AT_rich Low_complexity Low_complexity 1 28 0 1 917 705 301 62 31 chr4 43617609 43617900 -112012220 - RMER15 LTR ERVL 0 575 276 1 917 1134 134 69 99 chr4 43618438 43618670 -112011450 + URR1B DNA MER1_type 1 225 0 1 917 482 282 0 43 chr4 43618739 43618854 -112011266 - PB1D7 SINE Alu 0 120 11 1 917 270 165 18 49 chr4 43619090 43619159 -112010961 + B1_Mur2 SINE Alu 46 109 -40 2 917 486 248 27 9 chr4 43619140 43619250 -112010870 - B3A SINE B2 -86 112 1 2 917 408 268 80 9 chr4 43619276 43619389 -112010731 - MLT1A1 LTR MaLR -2 406 286 2 917 664 86 9 9 chr4 43619464 43619570 -112010550 + (GA)n Simple_repeat Simple_repeat 1 106 0 2 917 492 269 53 8 chr4 43619726 43619857 -112010263 - B1F2 SINE Alu -6 143 7 2 917 269 183 17 0 chr4 43619889 43619949 -112010171 + CT-rich Low_complexity Low_complexity 3 63 0 2 917 227 167 0 0 chr4 43619949 43619985 -112010135 - PB1D9 SINE Alu 0 120 85 2 917 333 0 0 0 chr4 43620030 43620067 -112010053 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 917 496 165 29 10 chr4 43620123 43620227 -112009893 + RLTR15 LTR ERVK 1 106 -253 2 917 216 86 0 0 chr4 43620228 43620263 -112009857 + (G)n Simple_repeat Simple_repeat 1 35 0 2 917 461 278 55 67 chr4 43620265 43620519 -112009601 + RLTR15 LTR ERVK 99 349 -10 2 917 278 208 0 0 chr4 43620522 43620575 -112009545 - B1F SINE Alu -87 62 10 2 917 943 117 28 0 chr4 43621031 43621176 -112008944 - B1_Mur4 SINE Alu 0 150 2 2 917 180 0 0 0 chr4 43621222 43621242 -112008878 + (T)n Simple_repeat Simple_repeat 1 20 0 2 917 207 0 0 0 chr4 43621454 43621477 -112008643 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 917 858 213 27 9 chr4 43621726 43621910 -112008210 - B3 SINE B2 -9 186 2 2 917 914 197 0 0 chr4 43621912 43622059 -112008061 - B1_Mur1 SINE Alu -2 147 1 2 917 919 85 123 0 chr4 43622573 43622703 -112007417 + B1_Mus2 SINE Alu 2 147 0 2 917 303 28 0 0 chr4 43622703 43622739 -112007381 + (A)n Simple_repeat Simple_repeat 1 36 0 2 917 582 249 15 38 chr4 43622842 43623002 -112007118 + ID_B1 SINE B4 69 222 -2 2 917 497 250 172 94 chr4 43623048 43623226 -112006894 - B4 SINE B4 -69 223 29 2 917 4475 77 7 28 chr4 43623226 43623826 -112006294 + LTRIS_Mus LTR ERV1 1 587 0 2 917 497 250 172 94 chr4 43623826 43623850 -112006270 - B4 SINE B4 -264 28 5 2 917 243 0 0 0 chr4 43623851 43623878 -112006242 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 917 405 281 0 0 chr4 43623891 43623980 -112006140 - PB1D10 SINE Alu -28 89 1 2 917 1140 95 0 0 chr4 43624006 43624154 -112005966 + B1_Mus1 SINE Alu 1 148 0 2 917 501 269 57 0 chr4 43624229 43624370 -112005750 + B1F SINE Alu 1 149 0 2 917 301 269 30 20 chr4 43624527 43624636 -112005484 + B1F1 SINE Alu 4 120 0 2 917 392 82 0 16 chr4 43624636 43624698 -112005422 + (GGA)n Simple_repeat Simple_repeat 1 61 0 2 917 185 160 66 13 chr4 43624724 43624800 -112005320 + (GGGTG)n Simple_repeat Simple_repeat 1 80 0 2 917 293 291 88 16 chr4 43625087 43625279 -112004841 - L1M5 LINE L1 -1451 4695 4490 2 917 276 274 86 34 chr4 43625437 43625554 -112004566 - ID_B1 SINE B4 -18 206 84 2 917 639 71 0 0 chr4 43625840 43625925 -112004195 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 917 195 310 17 0 chr4 43626021 43626079 -112004041 - L2 LINE L2 -557 2862 2804 2 917 486 292 20 59 chr4 43626336 43626489 -112003631 - B1F2 SINE Alu 0 149 2 2 917 26470 132 17 6 chr4 43626527 43631929 -111998191 - Lx LINE L1 -4 6650 1185 2 917 2674 176 60 48 chr4 43631929 43632700 -111997420 + RMER17B LTR ERVK 1 855 -103 2 917 4690 142 24 10 chr4 43632700 43633509 -111996611 - L1VL2 LINE L1 -5555 863 92 2 917 841 43 0 42 chr4 43634063 43634183 -111995937 + B1_Mur4 SINE Alu 36 150 0 2 917 1057 104 104 0 chr4 43634186 43634359 -111995761 + B2_Mm2 SINE B2 2 192 -3 2 917 637 144 0 10 chr4 43634384 43634482 -111995638 - RLTR16 LTR ERVK -7 498 402 2 917 300 273 0 0 chr4 43634524 43634590 -111995530 - RLTR16 LTR ERVK -93 441 376 2 917 402 218 146 20 chr4 43634588 43634772 -111995348 - RLTR16 LTR ERVK -294 274 11 2 917 1796 159 61 32 chr4 43634778 43635187 -111994933 - MYSERV16_I-int LTR ERVK -8 2318 1898 2 917 1930 73 9 102 chr4 43635187 43635509 -111994611 + RLTR10B LTR ERVK 1 292 0 2 917 3557 134 39 11 chr4 43635509 43636170 -111993950 - MYSERV16_I-int LTR ERVK -423 1903 1224 2 917 1331 54 0 12 chr4 43636171 43636330 -111993790 + B2_Mm1a SINE B2 2 160 -33 2 917 345 24 0 0 chr4 43636330 43636372 -111993748 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 917 2628 176 83 39 chr4 43636380 43637167 -111992953 - MYSERV16_I-int LTR ERVK -1102 1224 277 2 917 863 209 14 57 chr4 43637176 43637455 -111992665 - RMER3D-int LTR ERVK -1464 1378 1112 2 917 532 272 52 106 chr4 43637923 43638252 -111991868 - RMER3D-int LTR ERVK -2475 367 59 2 917 315 0 0 0 chr4 43638252 43638287 -111991833 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 917 532 272 52 106 chr4 43638287 43638343 -111991777 - RMER3D-int LTR ERVK -2784 58 3 2 917 642 248 6 25 chr4 43638345 43638506 -111991614 - RLTR16 LTR ERVK 0 505 348 2 917 526 272 162 40 chr4 43638498 43638751 -111991369 - RLTR20D LTR ERVK -284 284 1 2 917 264 59 0 0 chr4 43638808 43638842 -111991278 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 917 321 269 129 41 chr4 43639004 43639151 -111990969 - L1M4b LINE L1 -5009 2325 2166 2 917 531 283 6 38 chr4 43639164 43639182 -111990938 + ID_B1 SINE B4 70 222 -2 2 917 752 207 14 0 chr4 43639182 43639322 -111990798 + B1_Mur2 SINE Alu 7 148 -1 2 917 461 234 22 79 chr4 43639304 43639443 -111990677 - MTEb LTR MaLR -22 357 227 2 917 2908 165 69 11 chr4 43639464 43639912 -111990208 + RLTR20D LTR ERVK 1 464 -104 2 917 378 0 0 0 chr4 43639912 43639954 -111990166 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 917 2908 165 69 11 chr4 43639954 43640039 -111990081 + RLTR20D LTR ERVK 465 564 -4 2 917 583 226 130 7 chr4 43640039 43640177 -111989943 - MTEb LTR MaLR -223 156 2 2 917 203 103 0 25 chr4 43640258 43640298 -111989822 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 917 768 222 208 0 chr4 43640589 43640801 -111989319 - Lx6 LINE L1 -26 7434 7179 2 917 297 0 0 0 chr4 43640817 43640850 -111989270 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 917 1286 231 24 13 chr4 43640852 43641473 -111988647 - Lx6 LINE L1 -574 6886 6194 2 917 257 150 0 0 chr4 43641478 43641518 -111988602 + tRNA-Lys-AAG tRNA tRNA 1 40 -36 2 917 820 271 77 28 chr4 43641590 43641837 -111988283 + B4A SINE B4 2 260 -32 2 917 201 154 0 0 chr4 43641839 43641878 -111988242 + T-rich Low_complexity Low_complexity 1 39 0 2 917 243 0 0 0 chr4 43641932 43641959 -111988161 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2 917 197 318 0 0 chr4 43642239 43642283 -111987837 + MIR SINE MIR 34 77 -131 2 917 373 125 18 46 chr4 43642604 43642713 -111987407 + (TAAA)n Simple_repeat Simple_repeat 1 106 0 2 917 569 193 84 0 chr4 43642736 43642855 -111987265 - B1F SINE Alu -5 144 16 2 917 239 250 0 40 chr4 43644153 43644228 -111985892 + G-rich Low_complexity Low_complexity 5 76 0 2 917 34 72 0 0 chr4 43644318 43644387 -111985733 + GC_rich Low_complexity Low_complexity 1 69 0 2 918 317 324 137 14 chr4 43648296 43648515 -111981605 - L2a LINE L2 -17 3409 3164 2 918 307 266 38 0 chr4 43648579 43648658 -111981462 - ID4_ SINE ID 0 83 2 2 918 477 90 0 0 chr4 43649547 43649614 -111980506 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 918 507 224 0 20 chr4 43649615 43649723 -111980397 + PB1D7 SINE Alu 13 117 -3 2 918 234 91 0 0 chr4 43650029 43650062 -111980058 + (T)n Simple_repeat Simple_repeat 1 33 0 2 918 728 286 60 0 chr4 43650106 43650323 -111979797 + Charlie1 DNA MER1_type 7 236 -2545 2 918 1258 29 0 0 chr4 43650356 43650496 -111979624 - B1_Mus1 SINE Alu -8 140 1 2 918 267 224 153 0 chr4 43650507 43650592 -111979528 + Charlie1 DNA MER1_type 2653 2750 -31 2 918 303 221 138 0 chr4 43650602 43650675 -111979445 + PB1D10 SINE Alu 17 99 -21 2 918 791 156 0 8 chr4 43650696 43650825 -111979295 + B3A SINE B2 2 129 -69 2 918 288 0 0 0 chr4 43650835 43650867 -111979253 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 918 531 254 26 0 chr4 43650898 43651012 -111979108 - PB1D10 SINE Alu 0 117 1 2 918 1157 55 7 14 chr4 43651425 43651572 -111978548 - B1_Mus1 SINE Alu -1 147 2 2 918 801 206 7 14 chr4 43651715 43651863 -111978257 - B1F1 SINE Alu -2 147 1 2 918 243 188 42 0 chr4 43652390 43652438 -111977682 - PB1D9 SINE Alu -29 91 42 2 918 1179 112 0 0 chr4 43652753 43652932 -111977188 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 918 257 0 30 0 chr4 43654731 43654764 -111975356 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 918 524 213 0 0 chr4 43654764 43654858 -111975262 - PB1D10 SINE Alu -11 106 13 2 918 339 295 10 10 chr4 43654775 43654871 -111975249 - ID_B1 SINE B4 -48 176 81 2 918 664 246 14 7 chr4 43654880 43655023 -111975097 - B1_Mur1 SINE Alu 0 149 6 2 918 911 232 19 14 chr4 43655059 43655269 -111974851 - B3 SINE B2 -4 212 2 2 918 519 284 3 17 chr4 43655374 43655521 -111974599 - MLT1A0 LTR MaLR -71 337 173 2 918 331 194 28 69 chr4 43655521 43655593 -111974527 + ID4_ SINE ID 3 71 -12 2 918 408 313 17 63 chr4 43655593 43655619 -111974501 - MLT1A0 LTR MaLR -213 195 172 2 918 244 127 36 0 chr4 43655619 43655674 -111974446 + GA-rich Low_complexity Low_complexity 2 58 0 2 918 429 293 0 0 chr4 43655683 43655765 -111974355 + B1F1 SINE Alu 7 88 -61 2 918 221 57 29 0 chr4 43655773 43655808 -111974312 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 2 918 929 150 0 26 chr4 43656723 43656874 -111973246 - B1_Mur3 SINE Alu -1 148 2 2 918 243 0 0 0 chr4 43656911 43656938 -111973182 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 918 476 283 17 0 chr4 43657482 43657602 -111972518 + B1F SINE Alu 28 149 0 2 918 495 176 72 27 chr4 43657639 43657750 -111972370 + PB1D10 SINE Alu 1 116 -1 2 918 629 196 15 15 chr4 43657879 43658014 -111972106 - B1_Mur3 SINE Alu -6 143 9 2 918 680 259 0 21 chr4 43658026 43658168 -111971952 - ID_B1 SINE B4 -3 221 83 2 918 21 0 0 0 chr4 43658409 43658430 -111971690 + AT_rich Low_complexity Low_complexity 1 21 0 2 918 559 236 75 20 chr4 43661780 43661927 -111968193 + RSINE1 SINE B4 3 157 -8 2 918 440 294 37 0 chr4 43661997 43662106 -111968014 + PB1D10 SINE Alu 5 117 0 2 918 248 278 9 36 chr4 43662302 43662414 -111967706 - L1MC4 LINE L1 -110 7932 7824 2 918 804 232 60 0 chr4 43662799 43662984 -111967136 - B3 SINE B2 -4 212 17 3 918 233 213 197 0 chr4 43666793 43666854 -111963266 + ID2 SINE ID 1 73 -10 3 918 300 231 40 129 chr4 43668234 43668358 -111961762 + PB1D10 SINE Alu 3 115 -2 3 918 397 237 39 10 chr4 43668547 43668669 -111961451 - B1F SINE Alu -21 128 1 3 918 301 303 73 9 chr4 43668577 43668687 -111961433 - B4 SINE B4 -109 183 67 3 918 22 0 0 0 chr4 43669232 43669254 -111960866 + GC_rich Low_complexity Low_complexity 1 22 0 3 918 216 0 0 0 chr4 43669766 43669790 -111960330 + (T)n Simple_repeat Simple_repeat 1 24 0 3 918 758 237 23 0 chr4 43670099 43670276 -111959844 - B3A SINE B2 -16 182 2 3 918 588 262 106 44 chr4 43670283 43670463 -111959657 - B3A SINE B2 -6 192 2 3 918 420 185 0 12 chr4 43670499 43670581 -111959539 + PB1D7 SINE Alu 37 117 -3 3 918 189 0 0 0 chr4 43674699 43674720 -111955400 + (ACTG)n Simple_repeat Simple_repeat 3 23 0 3 918 212 244 0 0 chr4 43675124 43675165 -111954955 + (TCCTG)n Simple_repeat Simple_repeat 5 45 0 3 918 208 321 96 26 chr4 43675693 43675808 -111954312 + L2 LINE L2 2736 2858 -561 3 918 278 316 57 29 chr4 43675941 43676081 -111954039 + YREP_Mm Unknown Unknown 151 294 -1518 3 918 531 264 14 48 chr4 43675957 43676104 -111954016 - ID_B1 SINE B4 -2 222 81 3 918 21 0 0 0 chr4 43677285 43677306 -111952814 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 719 218 88 0 chr4 43677710 43677857 -111952263 + ID_B1 SINE B4 2 161 -63 3 918 273 299 91 27 chr4 43680016 43680126 -111949994 - PB1D10 SINE Alu 0 117 1 3 918 256 326 35 0 chr4 43680713 43680734 -111949386 - ID_B1 SINE B4 -127 97 9 3 918 281 246 31 0 chr4 43680734 43680799 -111949321 - tRNA-Ala-GCY_ tRNA tRNA -6 69 3 3 918 659 200 69 0 chr4 43680807 43680937 -111949183 - B1F2 SINE Alu -2 147 9 3 918 802 204 49 6 chr4 43681103 43681266 -111948854 + B3 SINE B2 47 216 0 3 918 21 0 0 0 chr4 43682155 43682176 -111947944 + GC_rich Low_complexity Low_complexity 1 21 0 3 918 220 111 0 43 chr4 43682226 43682273 -111947847 + (CCCCAG)n Simple_repeat Simple_repeat 1 45 0 3 918 340 365 0 0 chr4 43682357 43682535 -111947585 + C-rich Low_complexity Low_complexity 2 179 0 3 918 296 376 0 6 chr4 43682495 43682666 -111947454 + (CCCCAG)n Simple_repeat Simple_repeat 3 172 0 3 918 235 281 117 68 chr4 43683487 43683590 -111946530 - MIR SINE MIR -66 142 35 3 918 351 0 0 0 chr4 43684278 43684317 -111945803 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 918 350 184 0 13 chr4 43684460 43684537 -111945583 + CT-rich Low_complexity Low_complexity 3 78 0 3 918 243 333 25 13 chr4 43684541 43684620 -111945500 - B4A SINE B4 -211 81 2 3 918 182 171 24 0 chr4 43685768 43685809 -111944311 + GA-rich Low_complexity Low_complexity 1 42 0 3 918 534 163 0 0 chr4 43686391 43686489 -111943631 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 918 191 321 0 0 chr4 43689255 43689311 -111940809 - L2b LINE L2 -29 3346 3291 3 918 236 358 60 79 chr4 43690458 43690710 -111939410 + L2 LINE L2 2367 2613 -806 3 918 1716 198 97 18 chr4 43690945 43691326 -111938794 - MTD LTR MaLR -8 411 1 3 918 593 246 15 0 chr4 43691372 43691502 -111938618 + B1F SINE Alu 5 136 -13 3 918 448 294 64 70 chr4 43692928 43693100 -111937020 + B4 SINE B4 2 172 -120 3 918 275 164 73 0 chr4 43695505 43695560 -111934560 - L1MC2 LINE L1 -11 6333 6275 3 918 758 281 220 4 chr4 43695567 43695799 -111934321 + B4 SINE B4 1 282 -10 3 918 191 36 0 35 chr4 43695959 43695988 -111934132 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 918 253 188 0 38 chr4 43696007 43696074 -111934046 - B2_Mm2 SINE B2 -107 109 47 3 918 1120 160 17 0 chr4 43696110 43696285 -111933835 - B2_Mm1t SINE B2 -14 179 2 3 918 672 152 0 63 chr4 43696484 43696674 -111933446 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 918 545 244 34 0 chr4 43696677 43696796 -111933324 - B1_Mur1 SINE Alu -26 123 1 3 918 345 261 161 73 chr4 43697120 43697244 -111932876 + ID_B1 SINE B4 88 222 -2 3 918 468 240 400 0 chr4 43697619 43697769 -111932351 - B3 SINE B2 -6 210 1 3 918 198 200 0 0 chr4 43699459 43699493 -111930627 + T-rich Low_complexity Low_complexity 12 45 0 3 918 276 30 0 0 chr4 43699493 43699526 -111930594 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 3 918 384 241 17 7 chr4 43699536 43699635 -111930485 - B1F SINE Alu 0 149 22 3 918 398 347 71 73 chr4 43699704 43699876 -111930244 - LTR89 LTR ERVL? -24 855 690 3 918 633 229 57 7 chr4 43699876 43700017 -111930103 - B1_Mur1 SINE Alu -1 148 1 3 918 398 347 71 73 chr4 43700017 43700338 -111929782 - LTR89 LTR ERVL? -190 689 364 3 918 426 284 112 0 chr4 43700356 43700490 -111929630 + RSINE1 SINE B4 13 161 -4 3 918 692 205 0 0 chr4 43701239 43701361 -111928759 + B1F SINE Alu 20 141 -8 3 918 864 209 68 19 chr4 43701927 43702132 -111927988 + B3 SINE B2 2 216 0 3 918 252 122 0 0 chr4 43703660 43703701 -111926419 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 918 420 37 0 0 chr4 43704255 43704309 -111925811 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 918 770 58 10 0 chr4 43704309 43704412 -111925708 + (GA)n Simple_repeat Simple_repeat 1 105 0 3 918 238 321 174 28 chr4 43704903 43705121 -111924999 - MamGypLTR1d LTR Gypsy -488 325 76 3 918 505 214 52 26 chr4 43705180 43705295 -111924825 + PB1D9 SINE Alu 2 119 -1 3 918 683 262 54 10 chr4 43705312 43705516 -111924604 + B3 SINE B2 3 215 -1 3 918 454 225 0 0 chr4 43705557 43705646 -111924474 + 5S rRNA rRNA 2 90 -31 3 918 1783 244 83 90 chr4 43707160 43707253 -111922867 - RLTR40 LTR ERVK -13 804 731 3 918 841 188 35 0 chr4 43707253 43707397 -111922723 - B1_Mur1 SINE Alu 0 149 1 3 918 1783 244 83 90 chr4 43707397 43708113 -111922007 - RLTR40 LTR ERVK -87 730 1 3 918 248 0 0 30 chr4 43708366 43708399 -111921721 + (GGGTG)n Simple_repeat Simple_repeat 5 36 0 3 918 683 340 69 28 chr4 43708688 43709081 -111921039 + MLT1I LTR MaLR 3 411 0 3 918 195 317 73 46 chr4 43710107 43710216 -111919904 + MIR3 SINE MIR 83 194 -14 3 918 212 279 0 32 chr4 43710315 43710378 -111919742 - B4A SINE B4 -155 137 77 3 918 320 293 0 0 chr4 43710410 43710485 -111919635 - L2a LINE L2 -1 3425 3351 3 918 642 26 0 0 chr4 43711330 43711406 -111918714 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 918 436 292 146 29 chr4 43711832 43712072 -111918048 - MLT1I LTR MaLR 0 411 144 3 918 347 274 68 10 chr4 43712212 43712315 -111917805 + B1F2 SINE Alu 1 109 -40 3 918 258 315 18 36 chr4 43712463 43712575 -111917545 + MIR3 SINE MIR 3 112 -96 3 918 525 32 0 0 chr4 43713095 43713158 -111916962 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 3 918 636 237 96 0 chr4 43713201 43713336 -111916784 - B1F2 SINE Alu -1 148 1 3 918 249 344 54 57 chr4 43714842 43715193 -111914927 - L1ME4a LINE L1 -27 6097 5748 3 918 1152 68 7 26 chr4 43715260 43715411 -111914709 - B1_Mus1 SINE Alu 0 148 1 3 918 351 0 0 0 chr4 43715458 43715497 -111914623 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 918 3119 234 60 28 chr4 43715598 43716385 -111913735 + RMER1A Other Other 60 871 -159 3 918 850 204 116 21 chr4 43716396 43716586 -111913534 - B3 SINE B2 -5 211 4 3 918 1445 68 0 6 chr4 43717444 43717621 -111912499 - B2_Mm2 SINE B2 -19 176 1 3 918 407 229 41 10 chr4 43718130 43718227 -111911893 - PB1D10 SINE Alu -3 114 15 3 918 214 296 0 0 chr4 43718181 43718235 -111911885 - B4A SINE B4 -147 145 92 3 918 261 214 129 12 chr4 43719526 43719611 -111910509 + MIR3 SINE MIR 60 154 -54 3 918 277 235 80 34 chr4 43719703 43719791 -111910329 + MER103 DNA DNA 67 158 -8 3 918 434 18 18 0 chr4 43720617 43720672 -111909448 + (TAAAA)n Simple_repeat Simple_repeat 4 59 0 3 918 231 36 0 0 chr4 43721704 43721732 -111908388 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 918 369 58 0 0 chr4 43721784 43721836 -111908284 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 3 918 189 0 0 0 chr4 43721836 43721857 -111908263 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 918 225 0 0 0 chr4 43723354 43723379 -111906741 + (A)n Simple_repeat Simple_repeat 1 25 0 3 918 358 222 20 67 chr4 43724171 43724276 -111905844 - PB1D7 SINE Alu -5 145 43 3 918 230 307 149 11 chr4 43724571 43724752 -111905368 - L1M5 LINE L1 -1451 4695 4490 3 918 470 200 45 104 chr4 43725178 43725312 -111904808 + Lx8 LINE L1 7037 7162 -311 3 918 390 21 0 0 chr4 43725318 43725365 -111904755 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 918 21 0 0 0 chr4 43725414 43725435 -111904685 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 223 159 22 43 chr4 43725522 43725568 -111904552 - BC1_Mm scRNA scRNA -96 56 12 3 918 248 239 40 80 chr4 43726254 43726404 -111903716 + ORR1B1-int LTR MaLR 604 747 -762 3 918 443 242 39 62 chr4 43726279 43726300 -111903820 + B4 SINE B4 70 87 -205 3 918 683 139 0 9 chr4 43726300 43726409 -111903711 + B1_Mur4 SINE Alu 1 108 -42 3 918 229 303 132 0 chr4 43726458 43726534 -111903586 + B1F SINE Alu 8 93 -56 3 918 194 163 0 39 chr4 43726557 43726608 -111903512 + GA-rich Low_complexity Low_complexity 3 51 0 3 918 340 244 8 102 chr4 43726608 43726736 -111903384 + RSINE1 SINE B4 31 146 -19 4 918 552 304 163 0 chr4 43726747 43727004 -111903116 - L1M4 LINE L1 -393 5791 5493 4 918 693 201 11 6 chr4 43727010 43727069 -111903051 + polypyrimidine Low_complexity Low_complexity 121 179 0 4 918 1242 100 0 0 chr4 43727069 43727249 -111902871 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 918 693 201 11 6 chr4 43727249 43727281 -111902839 + polypyrimidine Low_complexity Low_complexity 89 120 0 4 918 1119 129 0 0 chr4 43727281 43727459 -111902661 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 918 693 201 11 6 chr4 43727459 43727541 -111902579 + polypyrimidine Low_complexity Low_complexity 5 88 0 4 918 887 109 7 0 chr4 43727542 43727680 -111902440 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 4 918 267 258 146 5 chr4 43727720 43727941 -111902179 - L1M4 LINE L1 -726 5452 5198 4 918 227 244 76 34 chr4 43727929 43728048 -111902072 - L1M4 LINE L1 -2513 3633 3510 4 918 1758 180 88 8 chr4 43728095 43728459 -111901661 - MTC LTR MaLR -14 407 15 4 918 348 24 0 0 chr4 43728550 43728591 -111901529 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 918 435 243 91 77 chr4 43728599 43728838 -111901282 - B4 SINE B4 -17 275 63 4 918 1275 214 191 17 chr4 43729705 43730062 -111900058 + MTD LTR MaLR 1 419 0 4 918 369 292 37 30 chr4 43730116 43730250 -111899870 - L1MC3 LINE L1 -1125 6660 6526 4 918 198 91 0 0 chr4 43730251 43730284 -111899836 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 918 395 289 80 37 chr4 43730284 43730471 -111899649 - MER33 DNA MER1_type -125 199 5 4 918 830 267 30 49 chr4 43730873 43731137 -111898983 - ORR1E LTR MaLR -99 260 2 4 918 1234 58 69 6 chr4 43731250 43731423 -111898697 - B2_Mm2 SINE B2 -1 194 11 4 918 718 245 55 6 chr4 43731470 43731634 -111898486 + B4A SINE B4 43 214 -78 4 918 333 0 0 0 chr4 43731634 43731671 -111898449 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 918 267 31 0 0 chr4 43731692 43731724 -111898396 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 918 216 274 163 39 chr4 43731935 43732064 -111898056 + L2c LINE L2 3243 3387 0 4 918 197 246 45 30 chr4 43732169 43732236 -111897884 - MIRm SINE MIR -116 160 93 4 918 246 237 0 26 chr4 43732317 43732395 -111897725 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 4 918 349 169 77 0 chr4 43732395 43732460 -111897660 - B1F SINE Alu -56 93 24 4 918 522 59 0 0 chr4 43732491 43732559 -111897561 + B1_Mus2 SINE Alu 80 147 0 4 918 1230 92 0 0 chr4 43732570 43732744 -111897376 + (GGAGAA)n Simple_repeat Simple_repeat 3 176 0 4 918 794 224 76 79 chr4 43732753 43733044 -111897076 + B4 SINE B4 2 291 -1 4 918 597 239 0 0 chr4 43733055 43733323 -111896797 + (CA)n Simple_repeat Simple_repeat 1 268 0 4 918 270 0 0 0 chr4 43733534 43733564 -111896556 + (C)n Simple_repeat Simple_repeat 1 30 0 4 918 1254 41 7 0 chr4 43734123 43734270 -111895850 - B1_Mus1 SINE Alu 0 148 1 4 918 373 381 0 0 chr4 43734301 43734440 -111895680 - ID_B1 SINE B4 -1 223 85 4 918 605 285 88 16 chr4 43734601 43734783 -111895337 + ID_B1 SINE B4 2 196 -28 4 918 605 160 70 0 chr4 43735041 43735141 -111894979 + B3 SINE B2 1 107 -109 4 918 321 298 29 92 chr4 43735207 43735381 -111894739 - L1M5 LINE L1 -2194 3952 3790 4 918 351 0 0 0 chr4 43735582 43735621 -111894499 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 918 490 230 28 55 chr4 43735621 43735737 -111894383 + PB1D7 SINE Alu 17 131 -18 4 918 903 299 40 36 chr4 43735938 43736155 -111893965 - L1MC1 LINE L1 -96 6237 6018 4 918 3581 20 2 0 chr4 43736155 43736550 -111893570 - MTA_Mm LTR MaLR 0 396 1 4 918 903 299 40 36 chr4 43736550 43736779 -111893341 - L1MC1 LINE L1 -316 6017 5789 4 918 4966 60 2 3 chr4 43736967 43737581 -111892539 - L1Md_F2 LINE L1 -1 6581 5969 4 918 211 271 0 0 chr4 43737904 43737952 -111892168 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 918 197 267 16 62 chr4 43738660 43738724 -111891396 + MIR SINE MIR 72 132 -76 4 918 196 100 50 0 chr4 43738869 43738909 -111891211 + (TCTCC)n Simple_repeat Simple_repeat 1 42 0 4 918 252 200 0 0 chr4 43740476 43740541 -111889579 + (CCA)n Simple_repeat Simple_repeat 1 65 0 4 918 195 188 0 111 chr4 43741404 43741458 -111888662 + MIRb SINE MIR 120 167 -101 4 918 468 62 0 0 chr4 43742313 43742377 -111887743 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 918 384 22 0 0 chr4 43745684 43745729 -111884391 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 918 352 113 16 16 chr4 43745736 43745799 -111884321 + MTD LTR MaLR 357 419 0 4 918 184 326 122 0 chr4 43745881 43745979 -111884141 - L2b LINE L2 -2 3373 3264 4 918 198 0 0 0 chr4 43746062 43746084 -111884036 + (GGA)n Simple_repeat Simple_repeat 2 23 0 4 918 318 298 129 0 chr4 43746530 43746701 -111883419 - MER53 DNA hAT 0 193 1 4 918 207 175 34 34 chr4 43746842 43746901 -111883219 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 918 2004 159 31 3 chr4 43746956 43747278 -111882842 - MTC LTR MaLR -8 413 83 4 918 3466 196 139 32 chr4 43747279 43747565 -111882555 - RMER1B Other Other 0 1066 750 4 918 3135 30 2 104 chr4 43747565 43748006 -111882114 + MTA_Mm LTR MaLR 1 396 0 4 918 3466 196 139 32 chr4 43748006 43748637 -111881483 - RMER1B Other Other -317 749 50 4 918 552 194 0 0 chr4 43748642 43748740 -111881380 - MTC LTR MaLR -323 98 1 4 918 248 127 18 0 chr4 43748840 43748895 -111881225 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 918 242 284 68 0 chr4 43750527 43750601 -111879519 + ORR1E LTR MaLR 25 103 -256 4 918 497 164 76 9 chr4 43750794 43750899 -111879221 - PB1D10 SINE Alu -5 112 1 4 918 1860 96 88 10 chr4 43751177 43751472 -111878648 + ORR1A3 LTR MaLR 1 318 -8 4 918 417 20 0 0 chr4 43751636 43751686 -111878434 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 918 322 335 37 73 chr4 43751743 43751988 -111878132 + MLT1D LTR MaLR 1 236 -269 4 918 2245 130 90 14 chr4 43752251 43752617 -111877503 + ORR1B1 LTR MaLR 1 394 0 4 918 454 240 10 50 chr4 43752740 43752841 -111877279 - PB1D10 SINE Alu -10 107 11 4 918 266 258 22 0 chr4 43753221 43753310 -111876810 + L1MC LINE L1 5709 5799 -2083 4 918 315 0 0 0 chr4 43753599 43753634 -111876486 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 918 536 213 142 49 chr4 43753656 43753839 -111876281 + B3 SINE B2 1 200 -16 4 918 642 225 3 0 chr4 43753962 43754084 -111876036 - B1_Mur2 SINE Alu -24 125 1 4 918 291 51 0 0 chr4 43754089 43754107 -111876013 + (T)n Simple_repeat Simple_repeat 1 18 0 4 918 1071 78 21 0 chr4 43754107 43754248 -111875872 - B1_Mm SINE Alu 0 147 4 4 918 291 51 0 0 chr4 43754248 43754268 -111875852 + (T)n Simple_repeat Simple_repeat 1 20 0 4 918 327 262 103 60 chr4 43754852 43755095 -111875025 - MTEa LTR MaLR -4 375 104 4 918 298 234 112 78 chr4 43755687 43755803 -111874317 + PB1D10 SINE Alu 1 120 0 4 918 626 162 16 79 chr4 43755806 43755933 -111874187 + PB1D9 SINE Alu 2 120 0 4 918 581 234 29 14 chr4 43756321 43756460 -111873660 - B1F SINE Alu -8 141 1 4 918 252 0 0 0 chr4 43756486 43756514 -111873606 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 918 427 302 23 16 chr4 43756543 43756671 -111873449 - RSINE1 SINE B4 0 165 37 4 918 570 286 82 79 chr4 43756848 43756928 -111873192 + MER99 DNA hAT? 197 266 -565 4 918 186 43 0 0 chr4 43756928 43756951 -111873169 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 918 850 74 138 16 chr4 43756951 43757074 -111873046 - B1_Mm SINE Alu -9 138 1 4 918 570 286 82 79 chr4 43757074 43757296 -111872824 + MER99 DNA hAT? 267 500 -331 4 918 290 192 52 30 chr4 43757428 43757549 -111872571 + B1F2 SINE Alu 13 125 -2 4 918 1067 207 0 15 chr4 43757792 43757988 -111872132 - B3 SINE B2 -22 194 2 4 918 582 284 123 11 chr4 43758537 43758822 -111871298 - L1MB3 LINE L1 -55 6128 5812 4 918 739 110 0 18 chr4 43758858 43758969 -111871151 - B1_Mur3 SINE Alu 0 149 41 4 918 25 31 0 0 chr4 43759028 43759060 -111871060 + AT_rich Low_complexity Low_complexity 1 32 0 4 918 589 250 32 0 chr4 43759060 43759184 -111870936 - B1F SINE Alu 0 149 22 4 918 405 0 0 0 chr4 43759747 43759792 -111870328 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 4 918 496 197 121 16 chr4 43760006 43760130 -111869990 + B3A SINE B2 1 137 -61 4 918 578 259 85 20 chr4 43761383 43761584 -111868536 + B3 SINE B2 2 215 -1 4 918 566 277 92 53 chr4 43761868 43762074 -111868046 + B3 SINE B2 1 214 -2 4 918 1937 142 14 152 chr4 43762572 43763005 -111867115 + ORR1C1 LTR MaLR 1 373 -5 4 918 236 247 25 49 chr4 43763570 43763651 -111866469 - ID4 SINE ID -4 79 1 4 918 517 226 8 50 chr4 43763654 43763775 -111866345 - PB1D10 SINE Alu 0 117 2 4 918 1970 102 31 22 chr4 43764329 43764648 -111865472 + RLTRETN_Mm LTR ERVK 1 322 0 4 918 14291 181 31 22 chr4 43764648 43768142 -111861978 + ETnERV-int LTR ERVK 1 4104 -3302 4 918 180 209 47 0 chr4 43768142 43768185 -111861935 - L4 LINE RTE -1231 798 754 4 918 14291 181 31 22 chr4 43768185 43768940 -111861180 + ETnERV-int LTR ERVK 4105 4993 -2413 4 918 206 118 0 0 chr4 43769233 43769267 -111860853 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 4 918 181 308 63 63 chr4 43769268 43769340 -111860780 + MIRm SINE MIR 73 143 -133 4 918 243 61 0 0 chr4 43769340 43769373 -111860747 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 918 181 308 63 63 chr4 43769373 43769411 -111860709 + MIRm SINE MIR 144 183 -93 4 918 740 42 0 10 chr4 43769685 43769782 -111860338 + (TTCTC)n Simple_repeat Simple_repeat 4 99 0 4 918 599 152 0 0 chr4 43769782 43769874 -111860246 - B1_Mur1 SINE Alu -10 139 48 4 918 1113 219 5 0 chr4 43770514 43770715 -111859405 - B3 SINE B2 -13 203 2 4 918 327 295 62 9 chr4 43770725 43770838 -111859282 - PB1D9 SINE Alu -1 119 1 4 918 1185 89 0 0 chr4 43770874 43771234 -111858886 + (CA)n Simple_repeat Simple_repeat 1 360 0 5 918 759 300 0 19 chr4 43771248 43771462 -111858658 - ID_B1 SINE B4 -11 213 4 5 918 488 344 0 30 chr4 43771769 43771934 -111858186 - RSINE1 SINE B4 -4 161 2 5 918 219 186 0 0 chr4 43772807 43772850 -111857270 + (CCG)n Simple_repeat Simple_repeat 2 44 0 5 918 336 127 0 0 chr4 43773632 43773687 -111856433 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 918 560 282 20 7 chr4 43773693 43773843 -111856277 - RSINE1 SINE B4 -12 153 2 5 918 994 105 0 27 chr4 43773905 43774052 -111856068 + B1_Mus1 SINE Alu 6 148 0 5 918 237 292 100 50 chr4 43773906 43774086 -111856034 - YREP_Mm Unknown Unknown -1502 310 122 5 918 544 271 54 0 chr4 43774158 43774287 -111855833 + ID_B1 SINE B4 86 221 -3 5 918 416 279 85 15 chr4 43774298 43774498 -111855622 + B3 SINE B2 3 216 0 5 918 218 255 0 0 chr4 43774994 43775041 -111855079 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 5 918 22 88 0 0 chr4 43775264 43775321 -111854799 + AT_rich Low_complexity Low_complexity 1 57 0 5 918 198 0 0 0 chr4 43776016 43776038 -111854082 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 918 633 133 71 0 chr4 43776642 43776740 -111853380 + B1_Mur2 SINE Alu 27 131 -18 5 918 1028 103 6 0 chr4 43776753 43776909 -111853211 + (GGGAGA)n Simple_repeat Simple_repeat 6 162 0 5 918 291 352 11 0 chr4 43776915 43777003 -111853117 + ID_B1 SINE B4 79 167 -57 5 918 189 0 0 0 chr4 43777037 43777058 -111853062 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 918 38 0 0 0 chr4 43777103 43777141 -111852979 + AT_rich Low_complexity Low_complexity 1 38 0 5 918 1862 165 52 36 chr4 43777424 43777789 -111852331 + ORR1D1 LTR MaLR 4 374 0 5 114 283 286 22 11 chr4 43778034 43778126 -111851994 + CT-rich Low_complexity Low_complexity 5 97 0 5 919 254 300 14 0 chr4 43778212 43778282 -111851838 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 919 252 186 141 14 chr4 43778327 43778398 -111851722 - B4A SINE B4 -43 249 170 5 919 7989 47 8 4 chr4 43778538 43779523 -111850597 + L1Md_F3 LINE L1 5595 6583 -1 5 919 22 0 0 0 chr4 43779527 43779549 -111850571 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 22 0 0 0 chr4 43779606 43779628 -111850492 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 547 186 49 0 chr4 43779628 43779730 -111850390 - PB1D7 SINE Alu -13 107 1 5 919 582 197 8 0 chr4 43781069 43781186 -111848934 + B3A SINE B2 2 119 -79 5 919 418 198 8 126 chr4 43781351 43781478 -111848642 - PB1D10 SINE Alu 0 117 6 5 919 327 105 0 0 chr4 43781540 43781597 -111848523 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 5 919 274 254 0 0 chr4 43782076 43782139 -111847981 + PB1D10 SINE Alu 43 105 -12 5 919 189 107 0 0 chr4 43782142 43782170 -111847950 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 5 919 705 230 45 22 chr4 43782313 43782491 -111847629 + B3A SINE B2 1 182 -16 5 919 478 295 62 0 chr4 43782674 43782803 -111847317 + RSINE1 SINE B4 3 139 -26 5 919 464 239 8 41 chr4 43784710 43784832 -111845288 + RSINE1 SINE B4 46 163 -2 5 919 471 18 0 0 chr4 43784909 43784965 -111845155 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 919 475 264 22 67 chr4 43785619 43785753 -111844367 + RSINE1 SINE B4 38 165 0 5 919 270 265 112 0 chr4 43786199 43786297 -111843823 + MLT1E3 LTR MaLR 327 435 -189 5 919 246 62 0 0 chr4 43786300 43786332 -111843788 + (CCTTG)n Simple_repeat Simple_repeat 3 34 0 5 919 494 197 8 0 chr4 43786342 43786459 -111843661 + CT-rich Low_complexity Low_complexity 2 119 0 5 919 383 267 118 7 chr4 43787182 43787318 -111842802 - HAL1 LINE L1 -758 1749 1599 5 919 349 220 159 28 chr4 43787323 43787359 -111842761 - MLT2B1 LTR ERVL 0 567 532 5 919 513 0 0 0 chr4 43787359 43787416 -111842704 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 919 349 220 159 28 chr4 43787416 43787524 -111842596 - MLT2B1 LTR ERVL -36 531 404 5 919 210 111 60 36 chr4 43788021 43788105 -111842015 + (TTTA)n Simple_repeat Simple_repeat 4 89 0 5 919 1201 248 15 37 chr4 43788131 43788403 -111841717 - Lx5 LINE L1 -1 7049 6784 5 919 1475 29 69 0 chr4 43788518 43788692 -111841428 - B2_Mm1a SINE B2 -6 187 2 5 919 5927 121 23 101 chr4 43788745 43789295 -111840825 + Lx5 LINE L1 4845 5405 -472 5 919 486 0 0 0 chr4 43789295 43789349 -111840771 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 919 719 82 0 0 chr4 43789350 43789447 -111840673 - B1_Mus1 SINE Alu -49 99 3 5 919 8563 152 20 39 chr4 43789447 43791071 -111839049 + Lx5 LINE L1 5407 7050 0 5 919 367 227 137 34 chr4 43791594 43791740 -111838380 + L1MD3 LINE L1 6668 6828 -1167 5 919 224 281 0 0 chr4 43792023 43792080 -111838040 + GA-rich Low_complexity Low_complexity 5 61 0 5 919 385 233 35 0 chr4 43792164 43792250 -111837870 + PB1D10 SINE Alu 1 89 -28 5 919 343 226 28 0 chr4 43792282 43792388 -111837732 + (TATG)n Simple_repeat Simple_repeat 4 112 0 5 919 297 0 0 0 chr4 43792388 43792421 -111837699 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 919 1786 154 40 23 chr4 43792421 43792767 -111837353 - MTC LTR MaLR -69 352 1 5 919 312 241 11 22 chr4 43792782 43792871 -111837249 + L1MD3 LINE L1 7711 7798 -163 5 919 220 276 0 2 chr4 43792872 43792942 -111837178 + ID4 SINE ID 6 74 -78 5 919 282 211 0 0 chr4 43793169 43793226 -111836894 - MTEb LTR MaLR -7 372 316 5 919 262 216 12 86 chr4 43793252 43793333 -111836787 - ID2 SINE ID -8 75 1 5 919 640 242 84 6 chr4 43793520 43793686 -111836434 + B3A SINE B2 1 179 -19 5 919 236 250 15 0 chr4 43793690 43793758 -111836362 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 919 24 0 0 0 chr4 43793758 43793782 -111836338 + AT_rich Low_complexity Low_complexity 1 24 0 5 919 252 246 0 0 chr4 43795570 43795639 -111834481 + CT-rich Low_complexity Low_complexity 1 69 0 5 919 534 172 55 69 chr4 43795671 43795803 -111834317 - PB1D7 SINE Alu -20 127 4 5 919 822 130 0 0 chr4 43795865 43795996 -111834124 + (TCCA)n Simple_repeat Simple_repeat 3 133 0 5 919 225 0 0 0 chr4 43796413 43796438 -111833682 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 919 207 0 0 0 chr4 43796438 43796460 -111833660 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 919 1119 315 130 14 chr4 43797557 43798118 -111832002 - MER54A LTR ERVL -261 640 15 5 919 428 275 88 16 chr4 43798132 43798324 -111831796 - L1M3 LINE L1 -622 5822 5617 5 919 202 61 61 0 chr4 43798343 43798376 -111831744 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 919 350 255 134 39 chr4 43798418 43798647 -111831473 - L1MD LINE L1 -2477 5518 5264 5 919 37153 39 18 1 chr4 43798802 43804450 -111825670 - L1Md_T LINE L1 0 6585 760 5 919 346 290 80 12 chr4 43804454 43804705 -111825415 - L1M3 LINE L1 -949 5197 4926 5 919 594 214 18 0 chr4 43804772 43804884 -111825236 + B1_Mur1 SINE Alu 2 115 -34 5 919 5279 152 70 16 chr4 43805031 43805856 -111824264 - Lx5 LINE L1 -3 7047 6180 5 919 270 0 0 0 chr4 43805856 43805886 -111824234 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 919 5279 152 70 16 chr4 43805886 43805995 -111824125 - Lx5 LINE L1 -871 6179 6063 5 919 229 267 0 0 chr4 43806066 43806141 -111823979 - L1_Mur3 LINE L1 -860 5020 4946 5 919 1059 214 60 0 chr4 43806160 43806375 -111823745 - Lx5 LINE L1 -11 7039 6812 5 919 1066 200 12 51 chr4 43806375 43806628 -111823492 + MTC LTR MaLR 179 421 0 5 919 610 277 113 28 chr4 43806776 43807103 -111823017 - L1M3 LINE L1 -1537 4603 4249 5 919 445 310 6 82 chr4 43807157 43807315 -111822805 - RSINE1 SINE B4 -1 164 19 5 919 1504 288 39 20 chr4 43807333 43807892 -111822228 - L1_Mur3 LINE L1 -1671 4209 3640 5 919 1650 131 112 91 chr4 43808067 43808452 -111821668 - RLTR9C LTR ERVK 0 393 1 5 919 550 56 0 14 chr4 43808459 43808532 -111821588 - RMER16-int LTR ERVK -4 7402 7331 5 919 2022 175 25 47 chr4 43808724 43809697 -111820423 - RMER16-int LTR ERVK -1230 4176 2561 5 919 1373 82 43 0 chr4 43809697 43809881 -111820239 - B2_Mm2 SINE B2 -1 194 3 5 919 2837 108 3 0 chr4 43810066 43810453 -111819667 + L1VL2 LINE L1 177 564 -5771 5 919 258 32 0 0 chr4 43810655 43810686 -111819434 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 919 462 183 6 166 chr4 43813250 43813407 -111816713 - L1M2 LINE L1 -2456 3687 3556 5 919 306 150 21 0 chr4 43813419 43813475 -111816645 + PB1D9 SINE Alu 3 59 -90 5 919 431 95 48 0 chr4 43813477 43813561 -111816559 + L1Md_F2 LINE L1 6495 6582 0 5 919 303 140 0 0 chr4 43813569 43813619 -111816501 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 5 919 889 299 148 20 chr4 43813672 43813843 -111816277 - L1_Mur3 LINE L1 -2456 3424 3209 5 919 252 0 0 0 chr4 43813843 43813871 -111816249 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 919 889 299 148 20 chr4 43813871 43814360 -111815760 - L1_Mur3 LINE L1 -2672 3208 2679 5 919 1512 105 113 25 chr4 43814367 43814641 -111815479 - Lx4A LINE L1 -916 6142 5845 5 919 3830 121 12 66 chr4 43814641 43815304 -111814816 + Lx4A LINE L1 6431 7057 -1 5 919 468 0 0 0 chr4 43815337 43815389 -111814731 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 919 739 240 25 25 chr4 43815400 43815639 -111814481 - L1_Rod LINE L1 -3152 2695 2457 5 919 336 300 0 6 chr4 43815643 43815773 -111814347 + (TAGA)n Simple_repeat Simple_repeat 1 130 0 5 919 2514 104 142 21 chr4 43815773 43816203 -111813917 + RLTR45 LTR ERVK 1 482 0 5 919 336 300 0 6 chr4 43816203 43816253 -111813867 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 5 919 1245 320 75 16 chr4 43816293 43816924 -111813196 - L1_Rod LINE L1 -3426 2421 1754 5 919 1595 239 40 40 chr4 43817001 43817502 -111812618 - RMER17B LTR ERVK -48 860 370 5 919 276 30 0 0 chr4 43817502 43817535 -111812585 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 919 954 58 0 21 chr4 43817536 43817677 -111812443 + (GAA)n Simple_repeat Simple_repeat 2 139 0 5 919 1595 228 29 25 chr4 43817677 43817795 -111812325 - RMER17B LTR ERVK -417 489 321 5 919 822 21 0 0 chr4 43817795 43817891 -111812229 + (GAGAA)n Simple_repeat Simple_repeat 5 100 0 5 919 841 259 15 84 chr4 43817891 43818052 -111812068 - RMER17A2 LTR ERVK -535 371 230 5 919 18537 144 22 15 chr4 43818053 43818368 -111811752 - L1_Mur1 LINE L1 -484 5402 5112 6 919 1061 89 14 0 chr4 43818368 43818514 -111811606 - B1_Mus1 SINE Alu 0 148 1 6 919 18537 144 22 15 chr4 43818514 43821388 -111808732 - L1_Mur1 LINE L1 -775 5111 2191 6 919 5594 77 13 17 chr4 43821386 43821876 -111808244 - L1VL2 LINE L1 -2363 1252 806 6 919 1457 73 11 0 chr4 43821876 43822067 -111808053 - B2_Mm1a SINE B2 0 193 1 6 919 5594 114 24 58 chr4 43822067 43822717 -111807403 - L1VL2 LINE L1 -5530 805 141 6 919 370 273 50 10 chr4 43822782 43822882 -111807238 + PB1D7 SINE Alu 3 106 -14 6 919 373 229 19 9 chr4 43822908 43823014 -111807106 - L1MD LINE L1 -2598 3548 3442 6 919 4377 190 47 60 chr4 43823024 43823220 -111806900 - RMER1A Other Other -10 1020 805 6 919 2240 88 71 7 chr4 43823220 43823529 -111806591 + ORR1A4 LTR MaLR 1 329 0 6 919 4377 202 55 54 chr4 43823529 43824533 -111805587 - RMER1A Other Other -226 804 47 6 919 1096 56 27 27 chr4 43824533 43824547 -111805573 - B1_Mm SINE Alu 0 147 137 6 919 693 24 0 0 chr4 43824547 43824630 -111805490 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 6 919 1096 56 27 27 chr4 43824630 43824761 -111805359 - B1_Mm SINE Alu -11 136 2 6 919 1812 249 83 31 chr4 43824761 43824892 -111805228 - RMER1B Other Other -947 119 1 6 919 6830 54 1 60 chr4 43825172 43825879 -111804241 + L1Md_T LINE L1 442 1138 -5586 6 919 1631 42 5 0 chr4 43825879 43826071 -111804049 + B2_Mm1t SINE B2 1 193 0 6 919 37780 20 4 3 chr4 43826071 43830554 -111799566 + L1Md_T LINE L1 1139 5586 -297 6 919 8637 30 1 0 chr4 43830555 43831549 -111798571 + L1Md_T LINE L1 5588 6582 0 6 919 180 0 0 0 chr4 43831608 43831628 -111798492 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 919 829 233 35 35 chr4 43831628 43831879 -111798241 - MTE-int LTR MaLR -1243 337 87 6 919 242 297 124 77 chr4 43832034 43832501 -111797619 - L1M5 LINE L1 -2697 3449 2961 6 919 272 104 0 40 chr4 43832554 43832604 -111797516 + (CCCCCT)n Simple_repeat Simple_repeat 4 51 0 6 919 729 206 35 0 chr4 43835257 43835398 -111794722 + RSINE1 SINE B4 2 147 -18 6 919 318 26 0 0 chr4 43835420 43835459 -111794661 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 919 348 88 0 0 chr4 43835460 43835517 -111794603 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 6 919 206 0 0 65 chr4 43837300 43837331 -111792789 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 919 1045 284 10 10 chr4 43837527 43837819 -111792301 + B4 SINE B4 1 292 0 6 919 225 0 0 0 chr4 43837885 43837910 -111792210 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 919 239 222 52 62 chr4 43837936 43838032 -111792088 + Tigger13a DNA MER2_type 291 385 -386 6 919 203 254 16 0 chr4 43838123 43838186 -111791934 + CT-rich Low_complexity Low_complexity 1 64 0 6 919 1461 210 83 21 chr4 43838243 43838579 -111791541 - Lx6 LINE L1 -26 7434 7078 6 919 703 188 14 4 chr4 43838581 43838744 -111791376 + Lx6 LINE L1 6947 7076 -384 6 919 23 0 0 29 chr4 43838753 43838770 -111791350 + AT_rich Low_complexity Low_complexity 1 17 0 6 919 925 244 10 0 chr4 43838770 43838971 -111791149 + B3 SINE B2 1 203 -13 6 919 23 0 0 29 chr4 43838971 43838987 -111791133 + AT_rich Low_complexity Low_complexity 1 16 0 6 919 565 241 17 24 chr4 43839245 43839391 -111790729 - ID_B1 SINE B4 -68 224 79 6 919 267 31 0 0 chr4 43839478 43839510 -111790610 + (CCCCCT)n Simple_repeat Simple_repeat 1 32 0 6 919 567 0 0 0 chr4 43839510 43839572 -111790548 + (TTC)n Simple_repeat Simple_repeat 3 65 0 6 919 696 271 109 82 chr4 43839588 43839913 -111790207 - L1MCa LINE L1 -5252 1256 911 6 919 1260 70 94 0 chr4 43839913 43840084 -111790036 - B2_Mm2 SINE B2 -8 187 1 6 919 696 271 109 82 chr4 43840084 43840124 -111789996 - L1MCa LINE L1 -5598 910 881 6 919 683 301 53 27 chr4 43840197 43840460 -111789660 + B4A SINE B4 1 270 -22 6 919 216 163 0 0 chr4 43840508 43840551 -111789569 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 919 219 114 0 0 chr4 43840879 43840914 -111789206 + (CCCCG)n Simple_repeat Simple_repeat 5 39 0 6 919 229 246 16 0 chr4 43841210 43841271 -111788849 + L1MD3 LINE L1 5906 5967 -2028 6 919 824 257 72 55 chr4 43841301 43841536 -111788584 + MTE2b LTR MaLR 19 257 -122 6 919 263 260 81 14 chr4 43841572 43841646 -111788474 + PB1D10 SINE Alu 36 114 -3 6 919 851 279 101 11 chr4 43841655 43842010 -111788110 - L1MB8 LINE L1 -63 6115 5729 6 919 767 158 303 0 chr4 43842073 43842238 -111787882 - B3 SINE B2 0 216 2 6 919 209 29 0 103 chr4 43842238 43842277 -111787843 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6 919 1603 202 152 77 chr4 43842438 43842958 -111787162 + RMER4B LTR ERVK 16 574 -11 6 919 448 139 46 11 chr4 43842969 43843056 -111787064 - B3 SINE B2 -17 199 110 6 919 712 203 0 0 chr4 43843078 43843201 -111786919 - B3 SINE B2 -70 146 24 6 919 211 261 69 42 chr4 43843216 43843288 -111786832 - PB1D10 SINE Alu -39 78 5 6 919 285 51 0 0 chr4 43843341 43843380 -111786740 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 919 496 303 96 40 chr4 43843473 43843745 -111786375 - Lx8 LINE L1 -2 7471 7185 6 919 400 343 28 55 chr4 43843765 43844018 -111786102 - Lx8 LINE L1 -381 7092 6847 6 919 392 261 106 22 chr4 43844045 43844225 -111785895 - L1MB5 LINE L1 -10 6164 5970 6 919 249 321 55 0 chr4 43844749 43844858 -111785262 + L1MA8 LINE L1 5846 5960 -352 6 919 569 301 80 71 chr4 43844863 43845213 -111784907 - ORR1E LTR MaLR -6 353 1 6 919 459 284 11 0 chr4 43845219 43845358 -111784762 + L1MA8 LINE L1 5975 6124 -167 6 919 411 287 17 9 chr4 43845603 43845719 -111784401 + PB1D10 SINE Alu 1 117 0 6 919 449 264 122 27 chr4 43845728 43845876 -111784244 + RSINE1 SINE B4 2 163 -2 6 919 216 238 0 0 chr4 43845899 43845962 -111784158 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 919 1156 62 7 0 chr4 43845986 43846132 -111783988 + B1_Mus2 SINE Alu 1 147 0 6 919 351 0 0 0 chr4 43846752 43846791 -111783329 + (A)n Simple_repeat Simple_repeat 1 39 0 6 919 212 279 124 34 chr4 43846804 43846893 -111783227 + PB1D7 SINE Alu 24 120 0 6 919 326 273 72 59 chr4 43846899 43847051 -111783069 + B3A SINE B2 3 156 -42 6 919 201 39 0 0 chr4 43847058 43847084 -111783036 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 919 304 254 80 26 chr4 43847492 43847605 -111782515 + PB1D9 SINE Alu 2 120 0 6 919 494 289 6 51 chr4 43848142 43848299 -111781821 - MER5A1 DNA MER1_type -3 163 14 6 919 232 269 115 31 chr4 43849465 43849561 -111780559 + B4A SINE B4 86 189 -103 6 919 461 219 56 19 chr4 43849475 43849582 -111780538 + PB1D9 SINE Alu 10 120 0 6 919 739 262 5 35 chr4 43849908 43850110 -111780010 - B3A SINE B2 -2 196 1 6 919 450 216 134 25 chr4 43850633 43850752 -111779368 + B1F2 SINE Alu 14 145 -4 6 919 372 316 86 23 chr4 43850795 43850970 -111779150 + L1MA5 LINE L1 5743 5931 -369 6 919 439 219 118 59 chr4 43851284 43851402 -111778718 + PB1D7 SINE Alu 6 130 -19 6 919 925 125 20 14 chr4 43851402 43851548 -111778572 + B1_Mus1 SINE Alu 1 147 -1 6 919 394 219 118 59 chr4 43851548 43851565 -111778555 + B1F SINE Alu 131 149 0 6 919 221 171 11 79 chr4 43851581 43851670 -111778450 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 6 919 403 270 58 125 chr4 43851801 43851920 -111778200 + MT2B LTR ERVL 54 157 -444 6 919 813 166 0 70 chr4 43851920 43852076 -111778044 + B1_Mus2 SINE Alu 3 147 0 6 919 215 231 0 0 chr4 43852093 43852145 -111777975 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 6 919 288 0 0 0 chr4 43852237 43852269 -111777851 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 919 762 287 24 103 chr4 43853509 43853839 -111776281 + RLTR11A2 LTR ERVK 1 304 -223 6 919 308 319 46 61 chr4 43853829 43854026 -111776094 + RLTR11B LTR ERVK 234 427 -26 6 919 743 309 43 5 chr4 43854709 43854917 -111775203 + ID_B1 SINE B4 1 216 -8 6 919 248 32 0 0 chr4 43854959 43854990 -111775130 + RMER6C LTR ERVK 1 31 -689 6 919 2355 146 76 11 chr4 43854989 43855110 -111775010 + RMER6C LTR ERVK 213 332 -358 6 919 354 45 0 0 chr4 43855110 43855154 -111774966 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 6 919 2355 146 76 11 chr4 43855154 43855481 -111774639 + RMER6C LTR ERVK 333 689 -1 6 919 416 240 29 20 chr4 43855560 43855662 -111774458 + PB1D10 SINE Alu 13 115 -2 6 919 382 300 65 65 chr4 43855713 43855820 -111774300 + RSINE1 SINE B4 59 165 0 6 919 295 234 0 99 chr4 43855882 43855908 -111774212 - MTC LTR MaLR 0 407 384 6 919 3738 30 0 0 chr4 43855908 43856334 -111773786 - L1Md_T LINE L1 -13 6569 6144 6 919 1174 143 366 43 chr4 43856334 43856447 -111773673 - MTC LTR MaLR -24 383 240 6 919 216 0 0 0 chr4 43856447 43856471 -111773649 + (CTTG)n Simple_repeat Simple_repeat 3 26 0 6 919 1174 98 97 15 chr4 43856471 43856590 -111773530 - MTC LTR MaLR -182 239 106 6 919 5599 73 0 8 chr4 43856593 43857422 -111772698 + L1VL2 LINE L1 303 1123 -2492 6 919 4848 72 23 0 chr4 43857708 43858404 -111771716 + L1VL2 LINE L1 1109 1820 -1795 6 919 248 314 35 0 chr4 43858551 43858637 -111771483 - PB1D10 SINE Alu -2 115 27 6 919 21 95 0 0 chr4 43859464 43859527 -111770593 + AT_rich Low_complexity Low_complexity 1 63 0 6 919 235 200 125 0 chr4 43859644 43859724 -111770396 + L1M2 LINE L1 2745 2834 -3309 6 919 618 113 101 28 chr4 43859733 43859842 -111770278 - MTC LTR MaLR -304 117 1 6 919 755 211 39 73 chr4 43860011 43860216 -111769904 + B3A SINE B2 1 198 0 6 919 364 228 32 21 chr4 43860228 43860322 -111769798 - B3 SINE B2 0 216 122 6 919 248 70 0 23 chr4 43860368 43860412 -111769708 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 6 919 467 307 78 26 chr4 43860894 43861048 -111769072 + MER21B LTR ERV1 478 639 -224 6 919 387 0 0 0 chr4 43861133 43861176 -111768944 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 919 500 143 9 0 chr4 43861176 43861288 -111768832 + GA-rich Low_complexity Low_complexity 2 114 0 6 919 996 46 0 0 chr4 43861306 43861437 -111768683 + L1Md_T LINE L1 6452 6582 0 6 919 497 147 0 0 chr4 43862734 43862809 -111767311 - B1_Mus2 SINE Alu -60 87 13 6 919 400 111 63 3 chr4 43862810 43862886 -111767234 - ORR1B1 LTR MaLR 0 384 296 6 919 1867 150 40 37 chr4 43862881 43863234 -111766886 + ORR1B1 LTR MaLR 41 394 0 6 919 1647 146 113 0 chr4 43863234 43863529 -111766591 - ORR1B1 LTR MaLR -65 329 1 6 919 186 148 56 0 chr4 43863544 43863598 -111766522 + CT-rich Low_complexity Low_complexity 5 61 0 6 919 264 219 55 0 chr4 43863719 43863792 -111766328 + B1_Mus1 SINE Alu 8 84 -64 6 919 400 197 182 49 chr4 43863727 43863898 -111766222 + ID_B1 SINE B4 99 277 -15 7 919 210 171 0 0 chr4 43864212 43864253 -111765867 + GA-rich Low_complexity Low_complexity 4 44 0 7 919 228 258 67 76 chr4 43865273 43865378 -111764742 + LTR87 LTR ERVL? 42 145 -479 7 919 219 370 51 27 chr4 43865408 43865582 -111764538 + L2b LINE L2 3213 3365 -10 7 919 270 167 0 0 chr4 43866082 43866142 -111763978 + CT-rich Low_complexity Low_complexity 1 60 0 7 919 937 292 38 34 chr4 43866151 43866174 -111763946 - B4A SINE B4 0 292 270 7 919 477 110 0 0 chr4 43866174 43866247 -111763873 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 919 937 292 38 34 chr4 43866247 43866514 -111763606 - B4A SINE B4 -23 269 1 7 919 234 240 51 39 chr4 43866896 43866974 -111763146 - L1MEa LINE L1 -5953 117 39 7 919 236 309 72 31 chr4 43868160 43868257 -111761863 - MIR3 SINE MIR -54 154 54 7 919 309 317 144 16 chr4 43868554 43868679 -111761441 + RSINE1 SINE B4 9 149 -16 7 919 219 69 0 0 chr4 43868680 43868709 -111761411 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 919 239 333 127 20 chr4 43869454 43869604 -111760516 + MamGypLTR1b LTR Gypsy 589 754 -28 7 919 585 228 66 0 chr4 43869605 43869741 -111760379 - B1_Mur2 SINE Alu 0 149 5 7 919 383 226 16 65 chr4 43870134 43870257 -111759863 + PB1D10 SINE Alu 1 117 0 7 919 587 295 0 13 chr4 43870285 43870436 -111759684 + B1F SINE Alu 1 149 0 7 919 470 255 12 71 chr4 43870737 43870906 -111759214 - RSINE1 SINE B4 -6 159 1 7 919 404 223 120 32 chr4 43871106 43871231 -111758889 - B1F1 SINE Alu -2 147 12 7 919 706 186 108 0 chr4 43871251 43871380 -111758740 - B1_Mur2 SINE Alu -5 144 2 7 919 333 0 0 0 chr4 43872003 43872040 -111758080 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 919 342 45 0 0 chr4 43872088 43872132 -111757988 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 919 324 102 31 92 chr4 43872135 43872159 -111757961 - B1_Mus1 SINE Alu -50 98 80 7 919 2512 77 12 0 chr4 43872159 43872482 -111757638 - ORR1A2 LTR MaLR 0 327 1 7 919 324 102 31 92 chr4 43872482 43872522 -111757598 - B1_Mus1 SINE Alu -69 79 38 7 919 237 241 135 22 chr4 43873147 43873236 -111756884 - L1M2 LINE L1 -434 5866 5768 7 919 556 234 0 9 chr4 43874836 43874944 -111755176 - ID_B1 SINE B4 -6 218 112 7 919 389 310 71 89 chr4 43874950 43875219 -111754901 + MER74B LTR ERVL 359 622 0 7 919 324 269 28 46 chr4 43875350 43875459 -111754661 + PB1D10 SINE Alu 5 111 -6 7 919 423 302 65 72 chr4 43875466 43875605 -111754515 + RSINE1 SINE B4 24 161 -4 7 919 314 254 9 0 chr4 43875615 43875725 -111754395 + (CA)n Simple_repeat Simple_repeat 1 111 0 7 919 1054 103 0 7 chr4 43876088 43876228 -111753892 + B1_Mus1 SINE Alu 2 141 -7 7 919 203 0 0 36 chr4 43876228 43876256 -111753864 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 919 772 252 69 0 chr4 43876276 43876478 -111753642 + B3 SINE B2 1 216 0 7 919 1102 183 10 20 chr4 43876508 43876709 -111753411 - B3 SINE B2 -17 199 1 7 919 285 341 50 14 chr4 43876802 43876942 -111753178 - B1F1 SINE Alu -2 147 3 7 919 772 276 15 10 chr4 43876942 43877024 -111753096 - ID SINE ID -141 83 1 7 919 2145 152 47 54 chr4 43877217 43877641 -111752479 - MTC LTR MaLR 0 421 1 7 919 288 256 25 25 chr4 43877812 43877892 -111752228 - ID4_ SINE ID -2 81 2 7 919 575 270 5 42 chr4 43878078 43878253 -111751867 + ID_B1 SINE B4 81 246 -46 7 919 24 0 0 0 chr4 43878662 43878686 -111751434 + AT_rich Low_complexity Low_complexity 1 24 0 7 919 402 221 98 0 chr4 43878701 43878823 -111751297 - B1_Mur1 SINE Alu -14 135 2 7 919 2633 158 5 5 chr4 43879379 43879792 -111750328 - MTC LTR MaLR -8 413 1 7 919 1129 291 133 25 chr4 43879924 43880519 -111749601 - L1MC1 LINE L1 -26 6318 5660 7 919 579 250 17 0 chr4 43880539 43880655 -111749465 - B1F SINE Alu -6 143 26 7 919 189 74 0 0 chr4 43880690 43880717 -111749403 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 7 919 1340 157 9 0 chr4 43881010 43881220 -111748900 - B3 SINE B2 0 216 5 7 919 461 245 19 9 chr4 43881250 43881357 -111748763 + PB1D10 SINE Alu 1 108 -9 7 919 271 253 121 0 chr4 43881399 43881414 -111748706 - BC1_Mm scRNA scRNA -59 93 1 7 919 330 221 73 0 chr4 43881414 43881482 -111748638 - ID SINE ID -151 73 1 7 919 27 81 0 0 chr4 43881483 43881545 -111748575 + AT_rich Low_complexity Low_complexity 1 62 0 7 919 3523 124 35 9 chr4 43881555 43882125 -111747995 + RMER4B LTR ERVK 1 585 0 7 919 1024 138 0 20 chr4 43882125 43882273 -111747847 + B1_Mur2 SINE Alu 5 149 0 7 919 300 351 21 0 chr4 43882390 43882484 -111747636 + L1MEf LINE L1 657 752 -5448 7 919 546 244 9 9 chr4 43882486 43882602 -111747518 - B3A SINE B2 -82 116 1 7 919 23 33 0 0 chr4 43882604 43882634 -111747486 + AT_rich Low_complexity Low_complexity 1 30 0 7 919 378 0 0 0 chr4 43883882 43883924 -111746196 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 919 475 339 126 28 chr4 43884093 43884451 -111745669 - L2 LINE L2 -366 3053 2661 7 919 259 288 180 55 chr4 43884518 43884919 -111745201 - L1MEf LINE L1 -4907 1293 843 7 919 397 285 22 27 chr4 43885004 43885189 -111744931 + L1MEf LINE L1 667 854 -5240 7 919 431 324 71 56 chr4 43885192 43885516 -111744604 + L1MEc LINE L1 717 1045 -5355 7 919 393 229 52 27 chr4 43885574 43885681 -111744439 + PB1D10 SINE Alu 35 149 0 7 919 221 180 0 141 chr4 43885741 43885812 -111744308 + ID2 SINE ID 1 61 -22 7 919 3394 166 181 16 chr4 43885813 43886549 -111743571 + RMER19B LTR ERVK 78 890 -12 7 919 444 254 108 0 chr4 43886814 43886944 -111743176 + L1MC1 LINE L1 6181 6324 -9 7 919 1182 62 14 0 chr4 43887000 43887145 -111742975 - B1_Mm SINE Alu 0 147 1 7 919 403 256 0 11 chr4 43887331 43887418 -111742702 + ID_B1 SINE B4 139 224 0 7 919 243 0 0 0 chr4 43889563 43889590 -111740530 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 919 1017 174 41 28 chr4 43889903 43890121 -111739999 + URR1B DNA MER1_type 5 225 0 7 919 527 188 59 59 chr4 43890216 43890335 -111739785 + PB1D7 SINE Alu 1 119 -1 7 919 662 165 126 0 chr4 43890386 43890513 -111739607 + B1_Mur4 SINE Alu 2 144 -6 7 919 261 57 0 0 chr4 43890518 43890553 -111739567 + (TATG)n Simple_repeat Simple_repeat 1 35 0 7 919 356 211 0 13 chr4 43890712 43890789 -111739331 + L1MB7 LINE L1 6095 6170 -14 7 919 236 275 72 0 chr4 43892028 43892097 -111738023 + ID4 SINE ID 6 79 -4 7 919 393 219 92 37 chr4 43892300 43892409 -111737711 + PB1D9 SINE Alu 3 117 -3 7 919 419 274 42 0 chr4 43892545 43892684 -111737436 + B1F SINE Alu 1 146 -2 7 919 445 253 151 60 chr4 43892724 43892909 -111737211 + B4A SINE B4 23 224 -68 7 919 204 125 0 0 chr4 43892942 43892974 -111737146 + (GGA)n Simple_repeat Simple_repeat 2 33 0 7 919 26 0 0 0 chr4 43893037 43893063 -111737057 + AT_rich Low_complexity Low_complexity 1 26 0 7 919 258 353 58 7 chr4 43893063 43893200 -111736920 + B1F SINE Alu 1 144 -5 7 919 387 169 0 0 chr4 43893203 43893274 -111736846 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 919 872 226 15 35 chr4 43894320 43894522 -111735598 + B3A SINE B2 1 198 0 7 919 959 216 14 24 chr4 43894555 43894768 -111735352 + B3 SINE B2 3 213 -3 7 919 273 185 0 0 chr4 43895327 43895392 -111734728 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 919 3125 69 17 0 chr4 43895477 43895884 -111734236 - L1_Mus1 LINE L1 0 6567 6154 7 919 403 242 33 0 chr4 43895893 43895984 -111734136 - PB1D7 SINE Alu -5 115 22 7 919 253 219 184 20 chr4 43897358 43897456 -111732664 + L1ME4a LINE L1 5970 6083 -41 7 919 22 0 0 0 chr4 43897477 43897499 -111732621 + AT_rich Low_complexity Low_complexity 1 22 0 7 919 535 260 196 41 chr4 43897505 43897965 -111732155 - RMER5 LTR ERV1 0 534 5 7 919 189 0 0 0 chr4 43898126 43898147 -111731973 + (T)n Simple_repeat Simple_repeat 1 21 0 7 919 273 284 0 56 chr4 43898486 43898594 -111731526 - B1F1 SINE Alu -41 108 7 7 919 430 319 98 23 chr4 43898737 43898952 -111731168 + B4A SINE B4 53 283 -9 7 919 297 0 0 0 chr4 43898995 43899028 -111731092 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 919 2996 48 3 8 chr4 43899838 43900217 -111729903 - L1Md_F2 LINE L1 0 6582 6206 7 919 741 263 20 26 chr4 43901082 43901277 -111728843 - B3A SINE B2 -4 194 1 7 919 183 204 0 0 chr4 43901502 43901546 -111728574 + (CATG)n Simple_repeat Simple_repeat 3 46 0 7 919 538 235 114 0 chr4 43901547 43901679 -111728441 - B1_Mur1 SINE Alu -1 148 2 7 919 357 336 87 62 chr4 43901751 43901992 -111728128 - MER21B LTR ERV1 -553 310 64 7 919 856 291 55 47 chr4 43902257 43902658 -111727462 - RMER5 LTR ERV1 -19 515 112 7 919 422 280 37 0 chr4 43902873 43902980 -111727140 - PB1D10 SINE Alu -5 112 2 7 919 255 315 96 12 chr4 43903171 43903338 -111726782 + L2 LINE L2 2278 2458 -961 7 919 325 241 4 47 chr4 43903609 43903736 -111726384 + PB1D10 SINE Alu 4 120 0 7 919 430 273 155 59 chr4 43904004 43904378 -111725742 + L1MC4 LINE L1 7418 7827 -215 7 919 181 244 44 0 chr4 43904481 43904526 -111725594 - MIR SINE MIR -122 86 40 7 919 1660 42 0 0 chr4 43904558 43904751 -111725369 + B2_Mm1a SINE B2 1 193 0 8 919 234 0 0 0 chr4 43904775 43904801 -111725319 + (A)n Simple_repeat Simple_repeat 1 26 0 8 919 222 333 11 11 chr4 43905184 43905272 -111724848 - MIR SINE MIR -111 151 64 8 919 778 217 89 20 chr4 43905510 43905712 -111724408 - B3 SINE B2 0 216 1 8 919 288 192 108 142 chr4 43905852 43906028 -111724092 - L1MC5 LINE L1 -48 7913 7744 8 919 681 20 192 0 chr4 43906431 43906530 -111723590 + L1Md_F3 LINE L1 6455 6572 -12 8 919 1918 17 88 4 chr4 43906668 43906907 -111723213 + L1Md_F3 LINE L1 6326 6584 0 8 919 1055 121 72 0 chr4 43906927 43907093 -111723027 + B2_Mm1t SINE B2 2 179 -14 8 919 321 145 0 40 chr4 43907147 43907214 -111722906 + B2_Mm2 SINE B2 47 109 -107 8 919 1130 102 0 6 chr4 43907243 43907420 -111722700 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 8 919 319 216 51 30 chr4 43907421 43907520 -111722600 + PB1D10 SINE Alu 1 98 -51 8 920 243 0 0 0 chr4 43909200 43909227 -111720893 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 920 223 252 47 73 chr4 43909235 43909328 -111720792 - B1_Mur1 SINE Alu -16 133 5 8 920 1357 130 19 0 chr4 43911166 43911374 -111718746 - B3 SINE B2 -3 213 2 8 920 198 0 0 0 chr4 43911527 43911549 -111718571 + (TTTCC)n Simple_repeat Simple_repeat 2 23 0 8 920 568 229 27 20 chr4 43911838 43911985 -111718135 - B1F2 SINE Alu 0 149 2 8 920 22 70 0 0 chr4 43912826 43912869 -111717251 + AT_rich Low_complexity Low_complexity 1 43 0 8 920 24 53 0 0 chr4 43913037 43913075 -111717045 + AT_rich Low_complexity Low_complexity 1 38 0 8 920 271 61 184 0 chr4 43914699 43914748 -111715372 + ORR1A4 LTR MaLR 272 329 0 8 920 306 368 31 40 chr4 43915212 43915436 -111714684 + L1MEe LINE L1 534 755 -5364 8 920 250 250 110 33 chr4 43915691 43915771 -111714349 + ID_B1 SINE B4 124 211 -13 8 920 1273 34 0 0 chr4 43915771 43915919 -111714201 + B1_Mus1 SINE Alu 1 148 0 8 920 403 228 158 0 chr4 43916000 43916137 -111713983 + L1MEe LINE L1 1378 1552 -4597 8 920 649 276 18 0 chr4 43916890 43917053 -111713067 + B3 SINE B2 1 166 -50 8 920 515 158 12 0 chr4 43918366 43918448 -111711672 - B1_Mur1 SINE Alu -5 144 62 8 920 783 191 7 14 chr4 43918620 43918763 -111711357 + B1_Mur2 SINE Alu 2 143 -6 8 920 663 13 0 0 chr4 43918767 43918843 -111711277 + (GGGAA)n Simple_repeat Simple_repeat 4 79 0 8 920 225 94 0 0 chr4 43918885 43918917 -111711203 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 920 332 247 52 0 chr4 43919693 43919770 -111710350 + B1F1 SINE Alu 1 81 -68 8 920 703 187 260 12 chr4 43919928 43920101 -111710019 - B3 SINE B2 0 216 1 8 920 189 94 0 0 chr4 43921028 43921060 -111709060 + (TGGG)n Simple_repeat Simple_repeat 4 35 0 8 920 429 283 36 0 chr4 43921180 43921318 -111708802 - B1F1 SINE Alu 0 149 7 8 920 587 222 0 49 chr4 43921392 43921515 -111708605 - PB1D10 SINE Alu 0 117 1 8 920 273 200 70 14 chr4 43923402 43923473 -111706647 + ID4_ SINE ID 3 77 -6 8 920 257 250 92 20 chr4 43924016 43924114 -111706006 - B1F1 SINE Alu -44 105 1 8 920 275 212 15 29 chr4 43924048 43924116 -111706004 - ID_B1 SINE B4 -78 146 80 8 920 372 77 0 0 chr4 43925187 43925239 -111704881 + (TATG)n Simple_repeat Simple_repeat 3 54 0 8 920 249 167 241 0 chr4 43927044 43927098 -111703022 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 8 920 484 298 94 0 chr4 43927156 43927347 -111702773 - B3 SINE B2 -6 210 2 8 920 546 245 23 109 chr4 43927414 43927588 -111702532 + RSINE1 SINE B4 3 161 -4 8 920 516 239 0 9 chr4 43927598 43927712 -111702408 - B3 SINE B2 -3 213 101 8 920 752 234 25 0 chr4 43927823 43927981 -111702139 + B3A SINE B2 1 162 -36 8 920 346 262 13 76 chr4 43928058 43928215 -111701905 - ORR1E LTR MaLR -212 147 1 8 920 1785 162 50 25 chr4 43928319 43928679 -111701441 - ORR1D1 LTR MaLR -5 369 1 8 920 698 184 13 33 chr4 43929026 43929178 -111700942 - B1_Mur2 SINE Alu 0 149 1 8 920 399 254 132 0 chr4 43929245 43929359 -111700761 - RSINE1 SINE B4 -34 131 3 8 920 864 197 80 0 chr4 43929706 43929894 -111700226 + B3 SINE B2 14 216 0 8 920 1082 187 48 15 chr4 43930792 43930998 -111699122 - B3 SINE B2 -2 214 2 8 920 3150 48 25 2 chr4 43931667 43932065 -111698055 + MTB_Mm LTR MaLR 1 407 0 8 920 405 151 0 40 chr4 43932219 43932295 -111697825 + B1_Mur2 SINE Alu 77 149 0 8 920 313 204 179 21 chr4 43932310 43932455 -111697665 + L1MA8 LINE L1 6089 6256 -35 8 920 660 215 0 23 chr4 43933016 43933149 -111696971 - B1_Mur2 SINE Alu -19 130 1 8 920 510 241 66 0 chr4 43933254 43933391 -111696729 - ID_B1 SINE B4 0 224 79 8 920 331 295 24 24 chr4 43933429 43933554 -111696566 + L1ME2z LINE L1 5170 5294 -852 8 920 1130 189 19 10 chr4 43933578 43933786 -111696334 - B3 SINE B2 -6 210 1 8 920 1056 146 28 0 chr4 43933866 43934044 -111696076 + RMER12 LTR ERVK 1 183 -1139 8 920 1606 130 179 6 chr4 43934043 43934367 -111695753 + RMER12 LTR ERVK 516 895 -427 8 920 396 0 0 0 chr4 43934390 43934434 -111695686 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 920 401 35 53 0 chr4 43934441 43934498 -111695622 + (TTTTC)n Simple_repeat Simple_repeat 5 64 0 8 920 711 198 91 23 chr4 43934504 43934680 -111695440 + RMER12 LTR ERVK 1135 1322 0 8 920 297 268 62 55 chr4 43934682 43934828 -111695292 + L1ME2z LINE L1 5814 5960 -484 8 920 526 238 31 101 chr4 43935027 43935186 -111694934 - B1_Mus1 SINE Alu 0 148 1 8 920 1120 83 18 0 chr4 43935326 43935495 -111694625 + B2_Mm1t SINE B2 13 184 -9 8 920 354 98 0 0 chr4 43936272 43936323 -111693797 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 8 920 237 135 0 0 chr4 43936407 43936459 -111693661 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 920 282 233 55 0 chr4 43936462 43936535 -111693585 - RSINE1 SINE B4 -86 79 3 8 920 472 198 31 0 chr4 43937077 43937173 -111692947 - B1F SINE Alu -50 99 1 8 920 280 248 39 117 chr4 43937173 43937202 -111692918 - MT2B LTR ERVL -350 248 134 8 920 861 208 76 5 chr4 43937342 43937526 -111692594 - B3 SINE B2 -18 198 2 8 920 451 216 143 25 chr4 43938172 43938457 -111691663 - MTEa LTR MaLR 0 379 20 8 920 877 198 11 0 chr4 43940331 43940508 -111689612 + RLTR11A2 LTR ERVK 1 179 -348 8 920 345 100 0 0 chr4 43940495 43940545 -111689575 - B2_Mm2 SINE B2 -145 50 1 8 920 263 281 192 30 chr4 43940551 43940650 -111689470 - PB1D10 SINE Alu -1 116 2 8 920 938 214 47 0 chr4 43940819 43941011 -111689109 - B3 SINE B2 -14 202 2 8 920 430 242 76 23 chr4 43941513 43941538 -111688582 - ID_B1 SINE B4 -3 221 84 8 920 502 264 0 0 chr4 43941538 43941644 -111688476 - B1F SINE Alu -41 108 3 8 920 2314 107 22 0 chr4 43941804 43942122 -111687998 - ORR1A2 LTR MaLR -2 325 1 8 920 523 136 11 11 chr4 43942342 43942431 -111687689 + B1_Mur2 SINE Alu 58 146 -3 8 920 458 248 82 8 chr4 43942502 43942624 -111687496 + B4 SINE B4 1 131 -161 8 920 372 236 49 106 chr4 43942620 43942762 -111687358 + RSINE1 SINE B4 30 163 -2 8 920 496 258 56 31 chr4 43942856 43943016 -111687104 - RSINE1 SINE B4 -1 164 1 8 920 391 236 85 0 chr4 43944032 43944138 -111685982 + PB1D10 SINE Alu 1 115 -2 8 920 292 248 149 19 chr4 43945033 43945140 -111684980 - MTD LTR MaLR -298 121 1 8 920 2338 80 3 0 chr4 43945212 43945538 -111684582 - ORR1A2 LTR MaLR 0 327 1 8 920 9751 120 135 4 chr4 43945538 43947273 -111682847 - ORR1A2-int LTR MaLR 0 1963 1 8 920 2258 72 3 0 chr4 43947273 43947578 -111682542 - ORR1A2 LTR MaLR 0 327 22 8 920 260 259 12 47 chr4 43947600 43947685 -111682435 - MLT1J1 LTR MaLR -301 143 62 8 920 342 293 10 48 chr4 43947743 43947847 -111682273 + L1MC LINE L1 5391 5490 -2392 8 920 910 207 35 0 chr4 43947949 43948147 -111681973 - B3 SINE B2 -11 205 1 8 920 1428 63 16 0 chr4 43948397 43948587 -111681533 + B2_Mm2 SINE B2 2 194 -1 8 920 336 139 25 12 chr4 43948803 43948883 -111681237 + (TG)n Simple_repeat Simple_repeat 2 82 0 8 920 289 257 71 88 chr4 43948902 43949191 -111680929 - B4 SINE B4 0 292 2 8 920 242 0 61 0 chr4 43949387 43949420 -111680700 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 8 920 1101 45 0 0 chr4 43949420 43949554 -111680566 - B1_Mus2 SINE Alu -13 134 1 8 920 494 185 33 0 chr4 43949639 43949731 -111680389 + B1_Mur1 SINE Alu 49 143 -6 8 920 716 134 126 0 chr4 43950630 43950757 -111679363 + B1_Mur4 SINE Alu 2 144 -6 8 920 588 65 0 0 chr4 43950769 43950846 -111679274 + (GGGGA)n Simple_repeat Simple_repeat 5 81 0 8 920 558 0 0 0 chr4 43950846 43950907 -111679213 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 8 920 468 0 0 0 chr4 43951278 43951330 -111678790 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 920 726 275 34 0 chr4 43952263 43952423 -111677697 + B3 SINE B2 3 168 -48 8 920 546 79 0 0 chr4 43952423 43952499 -111677621 + (CATA)n Simple_repeat Simple_repeat 4 79 0 8 920 726 275 34 0 chr4 43952499 43952545 -111677575 + B3 SINE B2 169 215 -1 8 920 267 290 59 20 chr4 43952932 43953034 -111677086 - L2a LINE L2 -30 3396 3291 8 920 391 274 17 108 chr4 43954116 43954292 -111675828 - B4A SINE B4 -85 207 48 8 920 314 298 97 26 chr4 43954362 43954517 -111675603 + B3A SINE B2 31 196 -2 8 920 243 244 0 0 chr4 43954600 43954678 -111675442 + CT-rich Low_complexity Low_complexity 3 80 0 8 920 353 75 19 0 chr4 43954659 43954712 -111675408 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 920 234 0 0 0 chr4 43954712 43954738 -111675382 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 920 402 145 14 0 chr4 43954750 43954819 -111675301 + ID_B1 SINE B4 98 167 -57 9 920 378 227 45 0 chr4 43954819 43954838 -111675282 + PB1D10 SINE Alu 17 108 -9 9 920 292 227 48 0 chr4 43954862 43954937 -111675183 + PB1D10 SINE Alu 32 119 -1 9 920 300 172 45 11 chr4 43957495 43957583 -111672537 + (CTATA)n Simple_repeat Simple_repeat 3 93 0 9 920 301 329 46 44 chr4 43957956 43958138 -111671982 - MLT1I LTR MaLR -162 249 91 9 920 719 194 18 18 chr4 43959472 43959635 -111670485 + B3 SINE B2 1 163 -53 9 920 201 121 0 0 chr4 43959635 43959668 -111670452 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 920 3148 48 5 0 chr4 43959710 43960104 -111670016 - MTA_Mm LTR MaLR 0 396 1 9 920 853 150 77 6 chr4 43960109 43960290 -111669830 + Lx9 LINE L1 7331 7524 -120 9 920 270 217 0 16 chr4 43960338 43960399 -111669721 + RMER1A Other Other 79 138 -892 9 920 2653 155 57 14 chr4 43960367 43960857 -111669263 + RMER1B Other Other 544 1054 -12 9 920 439 189 0 28 chr4 43960867 43960976 -111669144 + Lx9 LINE L1 7538 7643 -1 9 920 1117 75 0 0 chr4 43961065 43961212 -111668908 + B1_Mus1 SINE Alu 1 147 -1 9 920 189 0 0 0 chr4 43961213 43961234 -111668886 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9 920 3286 23 8 0 chr4 43961358 43961751 -111668369 + MTA_Mm LTR MaLR 1 396 0 9 920 618 127 227 80 chr4 43961954 43962117 -111668003 + B2_Mm2 SINE B2 1 187 -8 9 920 456 152 18 35 chr4 43962553 43962724 -111667396 + (TG)n Simple_repeat Simple_repeat 2 169 0 9 920 379 216 21 54 chr4 43962728 43962914 -111667206 + (TATG)n Simple_repeat Simple_repeat 1 180 0 9 920 213 192 47 23 chr4 43962921 43963049 -111667071 + (TG)n Simple_repeat Simple_repeat 2 132 0 9 920 287 179 23 45 chr4 43963053 43963141 -111666979 + (TATG)n Simple_repeat Simple_repeat 1 86 0 9 920 271 186 42 24 chr4 43963143 43963308 -111666812 + (TG)n Simple_repeat Simple_repeat 2 169 0 9 920 267 345 26 0 chr4 43963309 43963422 -111666698 + PB1D10 SINE Alu 2 117 0 9 920 245 239 183 11 chr4 43963655 43963748 -111666372 + MamGypLTR2c LTR Gypsy 855 963 -105 9 920 800 58 74 0 chr4 43963815 43963936 -111666184 - B2_Mm2 SINE B2 -5 190 61 9 920 293 316 20 0 chr4 43964024 43964122 -111665998 - PB1D10 SINE Alu 0 117 18 9 920 1102 78 0 0 chr4 43964172 43964314 -111665806 + B1_Mus2 SINE Alu 1 142 -5 9 920 207 186 0 0 chr4 43964314 43964357 -111665763 + GA-rich Low_complexity Low_complexity 2 44 0 9 920 271 273 52 0 chr4 43964637 43964714 -111665406 + RSINE1 SINE B4 85 165 0 9 920 314 338 116 36 chr4 43964798 43965022 -111665098 + ORR1E LTR MaLR 98 339 -20 9 920 181 121 30 0 chr4 43965031 43965064 -111665056 - MIR SINE MIR -58 150 117 9 920 761 169 0 57 chr4 43965154 43965295 -111664825 - B1_Mur1 SINE Alu -1 148 15 9 920 3849 99 2 9 chr4 43965295 43965827 -111664293 + RMER2 LTR ERV1 1 529 -38 9 920 302 45 23 0 chr4 43965827 43965871 -111664249 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 9 920 3849 99 2 9 chr4 43965871 43965909 -111664211 + RMER2 LTR ERV1 530 566 -1 9 920 761 169 0 57 chr4 43965909 43965924 -111664196 - B1_Mur1 SINE Alu -135 14 1 9 920 289 71 54 0 chr4 43965988 43966044 -111664076 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 9 920 273 228 73 171 chr4 43966063 43966151 -111663969 - B1_Mus1 SINE Alu 0 148 85 9 920 1212 34 0 0 chr4 43966151 43966297 -111663823 - B1_Mus2 SINE Alu -1 146 1 9 920 273 228 73 171 chr4 43966297 43966372 -111663748 - B1_Mus1 SINE Alu -64 84 1 9 920 582 203 296 54 chr4 43966478 43966774 -111663346 + ORR1E LTR MaLR 1 369 -10 9 920 188 34 0 33 chr4 43966850 43966880 -111663240 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 9 920 240 261 102 0 chr4 43966967 43967055 -111663065 + BC1_Mm scRNA scRNA 12 108 -44 9 920 226 229 72 0 chr4 43967152 43967235 -111662885 + L1MD LINE L1 2413 2501 -3645 9 920 443 268 174 21 chr4 43967235 43967403 -111662717 + ORR1D2 LTR MaLR 171 364 -15 9 920 725 65 0 0 chr4 43967403 43967495 -111662625 + 4.5SRNA scRNA scRNA 2 93 -1 9 920 1151 61 0 0 chr4 43967495 43967642 -111662478 + B1_Mus1 SINE Alu 2 148 0 9 920 242 302 76 124 chr4 43967642 43967657 -111662463 + ORR1D2 LTR MaLR 365 378 -1 9 920 1105 116 5 42 chr4 43968435 43968461 -111661659 - B2_Mm2 SINE B2 -12 183 159 9 920 279 0 0 0 chr4 43968461 43968492 -111661628 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 9 920 1105 116 5 42 chr4 43968492 43968654 -111661466 - B2_Mm2 SINE B2 -37 158 2 9 920 308 260 13 0 chr4 43968731 43968808 -111661312 + ID_B1 SINE B4 119 196 -28 9 920 387 263 10 10 chr4 43969605 43969701 -111660419 + ID_B1 SINE B4 77 172 -52 9 920 495 248 9 0 chr4 43969708 43969813 -111660307 - PB1D9 SINE Alu -13 107 2 9 920 24 0 0 0 chr4 43970497 43970521 -111659599 + GC_rich Low_complexity Low_complexity 1 24 0 9 920 752 214 90 28 chr4 43971662 43971874 -111658246 - URR1A DNA MER1_type 0 226 2 9 920 263 362 5 0 chr4 43972022 43972141 -111657979 + MIR SINE MIR 45 167 -41 9 920 557 273 0 0 chr4 43972345 43972473 -111657647 - B1_Mur1 SINE Alu -17 132 5 9 920 338 246 85 62 chr4 43973005 43973135 -111656985 - RCHARR1 DNA MER1_type -4 970 838 9 920 594 247 28 141 chr4 43973157 43973412 -111656708 - B4A SINE B4 -39 253 28 9 920 560 197 104 24 chr4 43973474 43973599 -111656521 - B1_Mur2 SINE Alu -9 140 6 9 920 287 218 44 33 chr4 43973573 43973663 -111656457 - RCHARR1 DNA MER1_type -369 605 515 9 920 258 111 22 0 chr4 43973725 43973770 -111656350 - RCHARR1 DNA MER1_type -463 511 466 9 920 614 248 71 0 chr4 43973770 43973911 -111656209 + RSINE1 SINE B4 3 153 -12 9 920 300 186 0 0 chr4 43973929 43973988 -111656132 + GA-rich Low_complexity Low_complexity 2 60 0 9 920 968 288 165 0 chr4 43973995 43974137 -111655983 - RCHARR1 DNA MER1_type -493 481 313 9 920 1617 31 0 0 chr4 43974137 43974330 -111655790 + B2_Mm1a SINE B2 1 193 0 9 920 968 288 165 0 chr4 43974330 43974600 -111655520 - RCHARR1 DNA MER1_type -662 312 2 9 920 399 130 0 0 chr4 43975290 43975367 -111654753 + (TC)n Simple_repeat Simple_repeat 2 78 0 9 920 294 29 0 0 chr4 43975367 43975402 -111654718 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 920 1220 161 9 43 chr4 43975668 43975901 -111654219 + URR1B DNA MER1_type 1 225 0 9 920 210 71 0 0 chr4 43977791 43977819 -111652301 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 9 920 904 69 34 22 chr4 43980174 43980352 -111649768 + (TC)n Simple_repeat Simple_repeat 1 180 0 9 920 351 181 26 0 chr4 43980352 43980468 -111649652 + CT-rich Low_complexity Low_complexity 1 119 0 9 920 1019 73 12 30 chr4 43981955 43982124 -111647996 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 9 920 225 0 0 0 chr4 43982125 43982150 -111647970 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 9 920 360 0 0 0 chr4 43982636 43982676 -111647444 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 920 237 351 67 42 chr4 43982698 43982817 -111647303 - MER5B DNA MER1_type -7 171 50 9 920 492 217 0 0 chr4 43983852 43983990 -111646130 + (CA)n Simple_repeat Simple_repeat 2 139 0 9 920 181 319 72 0 chr4 43984060 43984129 -111645991 + MIRm SINE MIR 42 115 -161 9 920 1341 51 79 0 chr4 43984202 43984219 -111645901 - B2_Mm1a SINE B2 -1 192 162 9 920 315 0 0 0 chr4 43984219 43984254 -111645866 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 9 920 1341 51 79 0 chr4 43984254 43984413 -111645707 - B2_Mm1a SINE B2 -32 161 3 9 920 441 0 0 0 chr4 43984435 43984484 -111645636 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 920 267 114 0 0 chr4 43984589 43984633 -111645487 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 920 682 307 62 29 chr4 43984654 43984926 -111645194 - B4A SINE B4 -8 284 4 9 920 212 100 25 0 chr4 43985279 43985319 -111644801 + (CCCCCG)n Simple_repeat Simple_repeat 1 41 0 9 920 634 156 7 7 chr4 43986110 43986246 -111643874 + (TG)n Simple_repeat Simple_repeat 2 137 0 9 920 242 281 34 0 chr4 43986263 43986352 -111643768 - L1MC LINE L1 -2025 5857 5766 9 920 402 218 226 0 chr4 43987086 43987219 -111642901 + RSINE1 SINE B4 3 165 0 9 920 936 135 0 0 chr4 43987275 43987416 -111642704 - B1_Mus2 SINE Alu -5 142 2 9 920 24 0 0 0 chr4 43987424 43987448 -111642672 + AT_rich Low_complexity Low_complexity 1 24 0 9 920 405 181 0 14 chr4 43987555 43987628 -111642492 + ID4_ SINE ID 3 74 -9 9 920 423 0 0 0 chr4 43987666 43987713 -111642407 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 920 340 279 128 13 chr4 43987714 43987870 -111642250 + ID_B1 SINE B4 48 221 -3 9 920 408 20 0 0 chr4 43988146 43988195 -111641925 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 920 2840 61 200 9 chr4 43988380 43988810 -111641310 - RLTR1B LTR ERV1 0 512 1 9 920 237 254 51 0 chr4 43988819 43988878 -111641242 + ID4_ SINE ID 19 80 -3 9 920 540 0 0 0 chr4 43989714 43989774 -111640346 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 9 920 704 263 111 0 chr4 43989819 43990009 -111640111 + B3 SINE B2 1 211 -5 9 920 268 162 25 63 chr4 43990720 43990783 -111639337 + T-rich Low_complexity Low_complexity 17 77 0 9 920 839 123 72 0 chr4 43990783 43990921 -111639199 - B1_Mus1 SINE Alu 0 148 1 9 920 268 162 25 63 chr4 43990921 43990936 -111639184 + T-rich Low_complexity Low_complexity 2 16 0 9 920 199 29 86 0 chr4 43991334 43991369 -111638751 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 9 920 248 247 134 12 chr4 43992327 43992409 -111637711 + PB1D10 SINE Alu 21 112 -5 9 920 300 270 54 33 chr4 43992896 43992988 -111637132 - B1F1 SINE Alu -14 135 42 9 920 543 246 8 15 chr4 43993023 43993155 -111636965 + B1_Mur2 SINE Alu 4 134 -15 9 920 739 216 246 13 chr4 43993159 43993472 -111636648 - MTD LTR MaLR -9 410 25 9 920 301 306 16 31 chr4 43993512 43993640 -111636480 - RSINE1 SINE B4 -35 130 5 9 920 279 0 0 0 chr4 43993659 43993690 -111636430 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 920 767 289 5 19 chr4 43993695 43993900 -111636220 - ID_B1 SINE B4 -21 203 2 9 920 378 157 133 11 chr4 43994065 43994155 -111635965 - PB1 SINE Alu 0 127 27 9 920 303 162 0 0 chr4 43994519 43994599 -111635521 + GA-rich Low_complexity Low_complexity 1 80 0 1 920 21 57 0 0 chr4 43994763 43994798 -111635322 + AT_rich Low_complexity Low_complexity 1 35 0 1 920 667 142 18 0 chr4 43994809 43994922 -111635198 + B1_Mur3 SINE Alu 25 139 -10 1 920 195 42 0 0 chr4 43994922 43994946 -111635174 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 920 204 244 0 22 chr4 43995530 43995576 -111634544 - MIRb SINE MIR -6 262 218 1 920 180 188 0 0 chr4 43995596 43995628 -111634492 - MIRc SINE MIR -116 152 121 1 920 182 289 116 8 chr4 43996010 43996139 -111633981 + MIR3 SINE MIR 51 193 -15 1 920 201 74 0 0 chr4 43998443 43998470 -111631650 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1 920 335 351 42 0 chr4 43998976 43999151 -111630969 + MIR SINE MIR 15 193 -69 1 920 325 246 27 110 chr4 43999238 43999384 -111630736 - B1F1 SINE Alu -15 134 1 1 920 225 264 14 0 chr4 43999624 43999696 -111630424 - L1MB8 LINE L1 0 6178 6106 1 920 274 282 0 0 chr4 43999727 43999798 -111630322 + B1F SINE Alu 71 141 -8 1 920 949 192 11 21 chr4 43999806 43999992 -111630128 + B3 SINE B2 2 185 -31 1 920 503 295 30 15 chr4 44000065 44000199 -111629921 + ID_B1 SINE B4 86 221 -3 1 920 653 224 44 22 chr4 44000200 44000337 -111629783 + B1_Mur1 SINE Alu 1 140 -9 2 920 23 0 0 0 chr4 44000337 44000360 -111629760 + AT_rich Low_complexity Low_complexity 1 23 0 3 920 1350 83 0 16 chr4 44000366 44000550 -111629570 + B2_Mm2 SINE B2 1 181 -14 4 920 649 254 69 63 chr4 44000551 44000653 -111629467 - L1MB7 LINE L1 -53 6131 6026 5 920 346 292 108 0 chr4 44000653 44000783 -111629337 + B1F SINE Alu 3 146 -3 6 920 649 248 111 59 chr4 44000783 44001211 -111628909 - L1MB7 LINE L1 -159 6025 5522 5 920 878 221 110 42 chr4 44001226 44001528 -111628592 + Lx5 LINE L1 6744 7057 -1 7 920 427 248 62 27 chr4 44001844 44001956 -111628164 - RSINE1 SINE B4 -20 145 30 8 920 631 269 47 21 chr4 44001927 44002117 -111628003 + ID_B1 SINE B4 15 209 -15 9 920 289 265 202 40 chr4 44002122 44002295 -111627825 + L1MB8 LINE L1 5972 6172 -6 1 920 278 246 0 58 chr4 44002303 44002372 -111627748 + MLT1F1 LTR MaLR 161 225 -323 1 920 440 337 94 0 chr4 44002382 44002563 -111627557 + MLT1F1 LTR MaLR 365 562 -7 1 920 2411 156 3 3 chr4 44002670 44003050 -111627070 - RLTR14 LTR ERV1 0 382 3 1 920 229 198 47 25 chr4 44003083 44003146 -111626974 - ID4 SINE ID -2 81 21 1 920 510 216 18 9 chr4 44003214 44003326 -111626794 + PB1D7 SINE Alu 8 120 0 1 920 378 0 0 0 chr4 44003332 44003374 -111626746 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 920 337 276 0 0 chr4 44003501 44003577 -111626543 - ID4 SINE ID 0 83 8 1 920 266 208 111 0 chr4 44003660 44003732 -111626388 - PB1D9 SINE Alu 0 120 41 1 920 257 51 26 0 chr4 44003764 44003803 -111626317 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 920 656 263 26 0 chr4 44003808 44003964 -111626156 - B3A SINE B2 -38 160 1 1 920 757 273 25 10 chr4 44004001 44004197 -111625923 + B4A SINE B4 15 213 -79 2 920 345 355 69 28 chr4 44004305 44004450 -111625670 + ID_B1 SINE B4 55 205 -19 2 920 261 0 0 0 chr4 44004450 44004479 -111625641 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 920 317 186 14 0 chr4 44004479 44004549 -111625571 + GA-rich Low_complexity Low_complexity 2 72 0 2 920 219 150 0 0 chr4 44004763 44004803 -111625317 + (A)n Simple_repeat Simple_repeat 1 40 0 2 920 1349 202 142 69 chr4 44005008 44005480 -111624640 - RMER13A LTR ERVK -371 537 12 2 920 315 0 0 0 chr4 44005490 44005525 -111624595 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 920 1755 162 101 34 chr4 44005593 44005950 -111624170 - ORR1B1 LTR MaLR 0 394 14 2 920 2190 205 10 58 chr4 44006121 44006618 -111623502 + RMER19C LTR ERVK 138 610 -1 2 920 705 259 6 6 chr4 44006939 44007098 -111623022 - RSINE1 SINE B4 -2 163 5 2 920 1449 138 16 36 chr4 44007324 44007573 -111622547 - RLTR14-int LTR ERV1 -3021 2296 2053 3 920 1965 195 0 45 chr4 44007634 44008015 -111622105 - RLTR14-int LTR ERV1 -3268 2049 1686 3 920 2028 209 28 25 chr4 44008014 44008439 -111621681 - RLTR14-int LTR ERV1 -3629 1688 1283 3 920 4286 192 117 86 chr4 44008537 44009102 -111621018 - RLTR14-int LTR ERV1 -4028 1289 723 3 920 312 27 0 0 chr4 44009102 44009139 -111620981 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 920 528 59 0 0 chr4 44009139 44009206 -111620914 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 920 4286 192 117 86 chr4 44009206 44009890 -111620230 - RLTR14-int LTR ERV1 -4595 722 3 3 920 940 164 93 89 chr4 44009892 44010009 -111620111 - RLTR14 LTR ERV1 -2 380 261 3 920 1533 58 5 0 chr4 44010009 44010199 -111619921 - B2_Mm1t SINE B2 -1 192 2 3 920 940 164 93 89 chr4 44010199 44010253 -111619867 - RLTR14 LTR ERV1 -122 260 210 3 920 3761 124 122 2 chr4 44010253 44010858 -111619262 - RLTR33 LTR ERVK 0 678 1 3 920 940 164 93 89 chr4 44010858 44010932 -111619188 - RLTR14 LTR ERV1 -173 209 133 3 920 241 207 86 0 chr4 44010997 44011055 -111619065 - RLTR14 LTR ERV1 -160 222 160 3 920 243 0 0 0 chr4 44011055 44011082 -111619038 + (A)n Simple_repeat Simple_repeat 1 27 0 3 920 891 179 13 0 chr4 44011082 44011238 -111618882 - RLTR14 LTR ERV1 -214 168 11 3 920 2985 199 54 39 chr4 44011248 44012034 -111618086 - ORR1C1-int LTR MaLR -654 926 1 3 920 578 233 17 0 chr4 44012036 44012152 -111617968 - ORR1C1 LTR MaLR -2 376 259 3 920 17067 168 65 48 chr4 44012152 44013288 -111616832 + Lx7 LINE L1 1562 2790 -3090 3 920 279 0 0 0 chr4 44013288 44013319 -111616801 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 920 972 126 0 0 chr4 44013319 44013454 -111616666 - B1_Mus2 SINE Alu -10 137 3 4 920 17067 168 65 48 chr4 44013454 44013825 -111616295 + Lx7 LINE L1 2791 3162 -2718 3 920 1235 48 0 0 chr4 44013825 44013971 -111616149 - B1_Mm SINE Alu 0 147 2 4 920 17067 168 65 48 chr4 44013971 44014199 -111615921 + Lx7 LINE L1 3163 3398 -2482 3 920 1624 27 22 0 chr4 44014199 44014384 -111615736 + B2_Mm1t SINE B2 2 190 -3 4 920 17067 168 65 48 chr4 44014384 44016534 -111613586 + Lx7 LINE L1 3399 5513 -367 3 920 403 262 65 56 chr4 44016582 44016837 -111613283 + RLTR15 LTR ERVK 48 270 -89 4 920 1310 167 5 9 chr4 44016840 44017052 -111613068 + URR1B DNA MER1_type 14 224 -1 4 920 377 148 0 32 chr4 44017055 44017118 -111613002 + Lx7 LINE L1 5639 5699 -1997 3 920 254 254 0 16 chr4 44017807 44017871 -111612249 + RMER6B LTR ERVK 368 430 -31 4 920 2187 138 6 22 chr4 44017931 44018287 -111611833 - ORR1B2 LTR MaLR 0 367 18 4 920 207 0 0 0 chr4 44018294 44018317 -111611803 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 4 920 291 157 0 0 chr4 44018318 44018369 -111611751 + CT-rich Low_complexity Low_complexity 2 52 0 4 920 5274 135 46 4 chr4 44018385 44019212 -111610908 - Lx LINE L1 -1 6653 5792 5 920 333 47 0 0 chr4 44019212 44019255 -111610865 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 920 1230 50 6 25 chr4 44019255 44019418 -111610702 - B2_Mm1a SINE B2 -33 160 1 5 920 1468 105 14 0 chr4 44019418 44019628 -111610492 - Lx2 LINE L1 -1198 5799 5587 5 920 1637 203 58 41 chr4 44019657 44019829 -111610291 + Lx7 LINE L1 5700 5877 -1819 3 920 1607 207 60 32 chr4 44019829 44020199 -111609921 + ORR1C2 LTR MaLR 1 380 -4 5 920 1637 203 58 41 chr4 44020199 44020493 -111609627 + Lx7 LINE L1 5878 6174 -1522 3 920 984 214 16 0 chr4 44020493 44020675 -111609445 + Lx7 LINE L1 6476 6660 -1036 3 920 4983 171 240 80 chr4 44020675 44021918 -111608202 - ORR1B1-int LTR MaLR -98 1865 384 5 920 4000 55 16 4 chr4 44021918 44022424 -111607696 + L1Md_F2 LINE L1 6070 6581 -1 5 920 4983 171 240 80 chr4 44022424 44022787 -111607333 - ORR1B1-int LTR MaLR -1580 383 1 5 920 855 176 102 6 chr4 44022785 44022951 -111607169 - ORR1B1 LTR MaLR -2 392 211 5 920 530 222 214 22 chr4 44023020 44023175 -111606945 + Lx7 LINE L1 7357 7557 -139 3 920 894 136 98 33 chr4 44023175 44023358 -111606762 - B2_Mm2 SINE B2 0 195 1 5 920 530 222 214 22 chr4 44023358 44023478 -111606642 + Lx7 LINE L1 7558 7685 -11 3 920 351 197 278 10 chr4 44023480 44023591 -111606529 - MTD LTR MaLR -277 123 1 5 920 24 0 0 0 chr4 44023782 44023806 -111606314 + AT_rich Low_complexity Low_complexity 1 24 0 5 920 2330 115 90 47 chr4 44023811 44024213 -111605907 - MTC LTR MaLR 0 421 3 6 920 285 241 17 0 chr4 44024359 44024417 -111605703 - RSINE1 SINE B4 -103 62 4 6 920 1633 41 0 15 chr4 44024555 44024751 -111605369 + B2_Mm1a SINE B2 1 193 0 6 920 502 219 108 8 chr4 44024806 44024926 -111605194 + RSINE1 SINE B4 1 132 -33 6 920 225 0 0 0 chr4 44025010 44025035 -111605085 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 6 920 251 216 0 38 chr4 44025041 44025094 -111605026 - PB1 SINE Alu -17 110 60 6 920 231 292 28 0 chr4 44025191 44025263 -111604857 - MIRc SINE MIR -81 187 114 6 920 189 203 188 0 chr4 44027352 44027416 -111602704 - MIR3 SINE MIR -52 156 81 6 920 1430 76 38 0 chr4 44028135 44028319 -111601801 + B2_Mm2 SINE B2 3 193 -2 6 920 229 250 33 0 chr4 44028913 44028973 -111601147 - MIRb SINE MIR -167 101 40 6 920 332 222 169 8 chr4 44029067 44029185 -111600935 - B1_Mur2 SINE Alu -9 140 4 7 920 936 130 20 0 chr4 44029218 44029364 -111600756 - B1_Mur4 SINE Alu -1 149 1 7 920 477 264 119 21 chr4 44029529 44029672 -111600448 + B3 SINE B2 47 203 -13 7 920 285 250 0 18 chr4 44030018 44030075 -111600045 + RSINE1 SINE B4 6 61 -104 7 920 1000 195 18 75 chr4 44030224 44030451 -111599669 + ID_B1 SINE B4 1 214 -10 7 920 222 226 37 19 chr4 44030404 44030458 -111599662 + PB1D7 SINE Alu 63 117 -3 7 920 459 264 249 9 chr4 44030485 44030714 -111599406 + B4A SINE B4 9 292 0 7 920 357 196 141 11 chr4 44031025 44031134 -111598986 - B1F1 SINE Alu -21 128 8 7 920 341 242 66 0 chr4 44031156 44031247 -111598873 - RSINE1 SINE B4 -23 142 46 7 920 988 231 19 0 chr4 44031250 44031462 -111598658 - B3 SINE B2 0 216 1 7 920 231 210 14 127 chr4 44031488 44031559 -111598561 - ID4_ SINE ID -20 63 1 8 920 434 218 118 0 chr4 44031959 44032069 -111598051 - B1_Mur2 SINE Alu -25 124 2 8 920 265 300 85 70 chr4 44033266 44033543 -111596577 - MTEb LTR MaLR 0 379 79 8 920 682 185 51 21 chr4 44033656 44033814 -111596306 - B3 SINE B2 0 216 54 8 920 1101 122 192 6 chr4 44033953 44034135 -111595985 - B3 SINE B2 0 216 1 8 920 252 392 99 8 chr4 44034144 44034275 -111595845 - MIRb SINE MIR -121 147 5 8 920 278 200 304 0 chr4 44034419 44034515 -111595605 - B1_Mus2 SINE Alu -15 134 6 8 920 908 208 69 10 chr4 44034586 44034790 -111595330 - B3 SINE B2 0 216 1 8 920 208 321 24 12 chr4 44034928 44035013 -111595107 - MIR SINE MIR -59 149 64 8 920 244 303 110 10 chr4 44035134 44035234 -111594886 + Charlie5 DNA MER1_type 11 120 -2504 8 920 355 314 136 0 chr4 44035495 44035613 -111594507 - B1F2 SINE Alu -15 134 1 9 920 616 224 19 0 chr4 44036214 44036339 -111593781 - B1_Mur2 SINE Alu -20 129 2 9 920 323 235 49 12 chr4 44036425 44036507 -111593613 - RSINE1 SINE B4 -77 88 4 9 920 740 205 87 76 chr4 44037274 44037459 -111592661 + B3A SINE B2 1 187 -11 9 920 759 294 44 0 chr4 44037787 44037991 -111592129 + ID_B1 SINE B4 12 224 0 9 920 953 196 11 28 chr4 44037995 44038173 -111591947 - B3 SINE B2 -34 182 8 9 920 180 0 0 0 chr4 44038294 44038314 -111591806 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 920 1126 98 0 0 chr4 44038907 44039060 -111591060 + B2_Mm2 SINE B2 1 153 -42 9 920 315 0 0 0 chr4 44039062 44039097 -111591023 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 920 186 103 0 0 chr4 44039330 44039359 -111590761 + (A)n Simple_repeat Simple_repeat 1 29 0 9 14 679 73 257 0 chr4 44040135 44040244 -111589876 - B1_Mus1 SINE Alu -10 138 2 1 921 573 171 8 49 chr4 44040447 44040570 -111589550 - PB1D9 SINE Alu -2 118 1 1 921 602 295 38 0 chr4 44041774 44041984 -111588136 + ID_B1 SINE B4 4 221 -3 1 921 189 0 0 0 chr4 44042156 44042177 -111587943 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 921 232 224 86 0 chr4 44046145 44046203 -111583917 + MLT1G LTR MaLR 113 175 -416 1 921 824 180 7 0 chr4 44046557 44046696 -111583424 + B1_Mur4 SINE Alu 6 145 -5 1 921 387 275 59 92 chr4 44046560 44046712 -111583408 + B4A SINE B4 93 239 -53 1 921 1150 88 0 0 chr4 44046789 44046937 -111583183 + B1_Mus1 SINE Alu 1 148 0 1 921 1050 156 34 88 chr4 44047428 44047667 -111582453 + URR1A DNA MER1_type 1 226 0 1 921 803 269 159 92 chr4 44047676 44048110 -111582010 + ORR1D2-int LTR MaLR 1092 1554 -26 1 921 237 235 88 0 chr4 44048086 44048154 -111581966 + ORR1D2 LTR MaLR 5 78 -292 1 921 706 224 141 15 chr4 44048178 44048377 -111581743 + ORR1D2 LTR MaLR 147 370 0 1 921 439 248 16 79 chr4 44048467 44048594 -111581526 + PB1D7 SINE Alu 1 119 -1 1 921 1029 244 171 27 chr4 44049254 44049686 -111580434 + MT2A LTR ERVL 1 578 -23 1 921 520 207 127 52 chr4 44049718 44049891 -111580229 - B3A SINE B2 -11 187 2 1 921 226 254 27 95 chr4 44050292 44050366 -111579754 + MT2B LTR ERVL 153 221 -380 1 921 257 214 26 79 chr4 44050390 44050403 -111579717 - PB1D7 SINE Alu 0 120 110 1 921 1287 40 0 0 chr4 44050403 44050551 -111579569 - B1_Mus1 SINE Alu 0 148 1 1 921 257 214 26 79 chr4 44050551 44050613 -111579507 - PB1D7 SINE Alu -11 109 49 1 921 232 178 284 14 chr4 44050634 44050708 -111579412 - PB1 SINE Alu 0 127 34 1 921 239 209 22 0 chr4 44051244 44051303 -111578817 - PB1D7 SINE Alu -12 137 65 1 921 244 266 24 71 chr4 44051426 44051511 -111578609 + ID4_ SINE ID 1 81 -2 1 921 212 282 162 9 chr4 44052334 44052445 -111577675 + MIRb SINE MIR 130 257 -11 1 921 491 189 309 6 chr4 44052445 44052610 -111577510 - B4A SINE B4 -77 215 1 1 921 243 0 0 0 chr4 44053551 44053578 -111576542 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 921 182 231 152 71 chr4 44053820 44053932 -111576188 + L3 LINE CR1 4367 4487 -2 1 921 537 200 79 16 chr4 44054044 44054171 -111575949 - B3 SINE B2 0 216 82 1 921 488 219 52 127 chr4 44054203 44054376 -111575744 - ID_B1 SINE B4 -51 173 14 1 921 1144 82 0 0 chr4 44056043 44056189 -111573931 + B1_Mus2 SINE Alu 2 147 0 1 921 216 97 0 0 chr4 44056189 44056220 -111573900 + (A)n Simple_repeat Simple_repeat 1 31 0 1 921 565 243 6 12 chr4 44057297 44057442 -111572678 - PB1D7 SINE Alu -1 147 6 1 921 246 257 114 0 chr4 44057958 44058028 -111572092 + ID2 SINE ID 2 79 -4 1 921 189 0 0 0 chr4 44058051 44058072 -111572048 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 921 421 275 41 129 chr4 44058129 44058144 -111571976 + B4A SINE B4 78 165 -127 1 921 757 163 14 41 chr4 44058144 44058291 -111571829 + B1_Mur2 SINE Alu 6 148 -1 1 921 326 298 26 56 chr4 44059134 44059273 -111570847 - PB1D10 SINE Alu -1 148 18 1 921 350 238 158 0 chr4 44059299 44059400 -111570720 - PB1D10 SINE Alu 0 117 1 1 921 431 35 18 0 chr4 44059473 44059530 -111570590 + (CAGT)n Simple_repeat Simple_repeat 2 59 0 1 921 233 282 34 34 chr4 44059918 44060006 -111570114 - B1F2 SINE Alu -56 93 6 1 921 468 319 79 26 chr4 44060018 44060285 -111569835 + L2 LINE L2 2046 2326 -1093 1 921 315 262 97 19 chr4 44060330 44060460 -111569660 + MLT1J2 LTR MaLR 71 209 -303 1 921 252 299 90 63 chr4 44060634 44060902 -111569218 + L2 LINE L2 2344 2618 -801 1 921 1887 135 87 62 chr4 44060960 44061315 -111568805 - MTC LTR MaLR -57 364 1 1 921 1397 212 202 6 chr4 44061529 44061708 -111568412 + MTD LTR MaLR 6 202 -217 1 921 333 0 0 0 chr4 44061708 44061745 -111568375 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 921 1397 212 202 6 chr4 44061745 44061911 -111568209 + MTD LTR MaLR 203 419 0 1 921 284 364 60 78 chr4 44061911 44062041 -111568079 + B4A SINE B4 65 191 -101 1 921 670 203 8 0 chr4 44061950 44062068 -111568052 + B1_Mus1 SINE Alu 11 129 -19 1 921 798 184 7 0 chr4 44062076 44062212 -111567908 - B1_Mur2 SINE Alu -12 137 1 1 921 822 276 49 0 chr4 44062720 44062905 -111567215 - ID_B1 SINE B4 -1 223 30 1 921 244 209 41 71 chr4 44063444 44063542 -111566578 + ID_B1 SINE B4 130 224 0 1 921 479 14 13 66 chr4 44063467 44063543 -111566577 + B1_Mur3 SINE Alu 77 148 -1 1 921 552 244 109 19 chr4 44063677 44063943 -111566177 + Lx9 LINE L1 5583 5969 -1675 1 921 423 0 0 0 chr4 44064177 44064224 -111565896 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 921 1141 92 0 41 chr4 44064274 44064444 -111565676 + B2_Mm2 SINE B2 23 185 -10 1 921 2368 273 105 22 chr4 44064448 44065265 -111564855 + Lx9 LINE L1 6425 7309 -335 1 921 327 256 157 44 chr4 44065311 44065391 -111564729 + Lx8 LINE L1 7247 7340 -133 1 921 198 0 0 0 chr4 44065391 44065413 -111564707 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 921 327 256 157 44 chr4 44065413 44065536 -111564584 + Lx8 LINE L1 7341 7473 0 1 921 240 208 0 0 chr4 44066881 44066929 -111563191 - Alu SINE Alu -117 58 11 1 921 1341 108 0 35 chr4 44067162 44067364 -111562756 + B2_Mm2 SINE B2 1 195 0 1 921 259 170 18 36 chr4 44068285 44068340 -111561780 - B1F1 SINE Alu -3 146 93 1 921 292 279 0 0 chr4 44068459 44068527 -111561593 + Tigger9a DNA Tigger 12 79 -653 1 921 340 277 151 0 chr4 44069005 44069124 -111560996 - RSINE1 SINE B4 -28 137 1 1 921 370 291 77 0 chr4 44069133 44069250 -111560870 - PB1 SINE Alu -1 126 1 1 921 318 143 32 51 chr4 44069277 44069361 -111560759 - B1F1 SINE Alu -1 148 46 1 921 329 324 43 7 chr4 44069693 44069833 -111560287 + B1_Mm SINE Alu 2 146 -1 1 921 255 250 135 54 chr4 44069960 44070108 -111560012 - RSINE1 SINE B4 -2 163 4 1 921 490 215 93 13 chr4 44070383 44070534 -111559586 + RSINE1 SINE B4 3 165 0 1 921 597 111 165 9 chr4 44070717 44070826 -111559294 - B1_Mus1 SINE Alu -21 127 2 1 921 784 179 7 46 chr4 44071017 44071169 -111558951 + B1_Mur1 SINE Alu 4 149 0 1 921 608 274 87 26 chr4 44071202 44071397 -111558723 + B4A SINE B4 81 287 -5 1 921 539 259 218 4 chr4 44071613 44071847 -111558273 - B4 SINE B4 0 292 9 1 921 1256 116 21 10 chr4 44071979 44072171 -111557949 + B2_Mm2 SINE B2 2 195 0 1 921 288 318 93 81 chr4 44072183 44072344 -111557776 + RSINE1 SINE B4 1 163 -2 1 921 21 36 0 0 chr4 44073518 44073546 -111556574 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 586 260 37 51 chr4 44073851 44073951 -111556169 - L1MA4 LINE L1 -374 5926 5823 1 921 1412 35 81 0 chr4 44073951 44073964 -111556156 - B2_Mm1a SINE B2 -5 188 176 1 921 207 0 0 0 chr4 44073964 44073987 -111556133 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 921 1412 35 81 0 chr4 44073987 44074146 -111555974 - B2_Mm1a SINE B2 -18 175 3 1 921 586 260 40 62 chr4 44074146 44074302 -111555818 - L1MA4 LINE L1 -481 5822 5681 1 921 243 0 0 0 chr4 44074413 44074440 -111555680 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 921 387 0 0 0 chr4 44074440 44074482 -111555638 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 921 292 304 34 43 chr4 44074570 44074687 -111555433 - PB1D9 SINE Alu 0 120 5 1 921 418 266 72 8 chr4 44075255 44075380 -111554740 + B1F2 SINE Alu 16 148 -1 1 921 457 266 14 28 chr4 44075486 44075629 -111554491 - Tigger5 DNA MER2_type -2262 144 4 1 921 225 0 0 0 chr4 44075723 44075748 -111554372 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 921 246 248 73 82 chr4 44075749 44075859 -111554261 - RSINE1 SINE B4 -13 152 44 1 921 237 351 64 0 chr4 44075924 44076018 -111554102 + PB1 SINE Alu 4 103 -24 1 921 244 322 125 42 chr4 44076012 44076132 -111553988 + B4 SINE B4 69 198 -94 1 921 574 227 76 0 chr4 44076038 44076157 -111553963 + B1F SINE Alu 7 134 -15 1 921 3528 15 8 0 chr4 44076158 44076551 -111553569 - MTA_Mm LTR MaLR 0 396 1 1 921 9315 33 3 1 chr4 44076551 44077647 -111552473 - MTA_Mm-int LTR MaLR 0 1098 1 1 921 3523 18 2 2 chr4 44077647 44078043 -111552077 - MTA_Mm LTR MaLR 0 396 1 1 921 25 0 0 0 chr4 44078048 44078073 -111552047 + AT_rich Low_complexity Low_complexity 1 25 0 1 921 250 211 354 35 chr4 44078083 44078196 -111551924 + B1F SINE Alu 1 149 0 1 921 346 198 36 36 chr4 44078113 44078197 -111551923 + ID_B1 SINE B4 141 224 0 1 921 575 233 82 15 chr4 44079029 44079164 -111550956 - B1F1 SINE Alu -1 148 5 1 921 306 232 0 0 chr4 44079211 44079267 -111550853 + tRNA-Ala-GCY_ tRNA tRNA 13 68 -7 1 921 297 0 0 0 chr4 44079312 44079345 -111550775 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 921 339 23 0 0 chr4 44080163 44080206 -111549914 - B1_Mus1 SINE Alu -100 48 6 1 921 215 274 106 30 chr4 44080351 44080483 -111549637 + L2b LINE L2 2391 2532 -887 1 921 318 257 76 0 chr4 44080888 44080993 -111549127 + L2b LINE L2 3055 3167 -208 1 921 287 233 13 76 chr4 44081179 44081258 -111548862 + B1F2 SINE Alu 13 86 -63 1 921 717 63 0 0 chr4 44081272 44081367 -111548753 + (GGGGA)n Simple_repeat Simple_repeat 2 96 0 1 921 32 0 0 0 chr4 44082085 44082117 -111548003 + AT_rich Low_complexity Low_complexity 1 32 0 1 921 292 107 186 0 chr4 44082119 44082191 -111547929 - Lx3A LINE L1 -7 6974 6881 1 921 801 199 7 20 chr4 44082342 44082491 -111547629 + B1_Mur1 SINE Alu 1 147 -2 1 921 345 237 165 71 chr4 44082720 44082847 -111547273 - B1F1 SINE Alu 0 149 11 1 921 243 185 72 52 chr4 44082827 44082924 -111547196 - Charlie7 DNA MER1_type -45 2567 2469 1 921 725 200 0 48 chr4 44083297 44083444 -111546676 - B1_Mur3 SINE Alu 0 149 10 1 921 396 289 12 79 chr4 44083298 44083463 -111546657 - ID_B1 SINE B4 0 224 71 1 921 270 21 0 60 chr4 44084167 44084217 -111545903 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 921 261 0 0 0 chr4 44084321 44084350 -111545770 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 921 283 379 0 17 chr4 44084570 44084688 -111545432 - MIRb SINE MIR -109 159 44 2 921 180 77 0 0 chr4 44086111 44086137 -111543983 + (A)n Simple_repeat Simple_repeat 1 26 0 2 921 397 286 31 0 chr4 44086639 44086737 -111543383 - B3A SINE B2 -26 172 72 2 921 556 227 37 29 chr4 44086872 44087008 -111543112 - B1F SINE Alu 0 149 13 2 921 382 324 73 40 chr4 44087506 44087657 -111542463 - MLT1D LTR MaLR -70 435 280 2 921 373 252 56 56 chr4 44087675 44087801 -111542319 - MLT1D LTR MaLR -293 212 87 2 921 354 232 23 47 chr4 44087988 44088074 -111542046 + PB1D7 SINE Alu 37 120 0 2 921 378 103 39 0 chr4 44088082 44088160 -111541960 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 921 450 259 161 28 chr4 44088169 44088312 -111541808 + RSINE1 SINE B4 4 165 0 2 921 30 0 0 0 chr4 44088340 44088370 -111541750 + AT_rich Low_complexity Low_complexity 1 30 0 2 921 6149 156 14 14 chr4 44088371 44089513 -111540607 + L1_Mur2 LINE L1 3231 4372 -1505 2 921 971 61 8 0 chr4 44090022 44090153 -111539967 + (GGGAGA)n Simple_repeat Simple_repeat 5 136 0 2 921 338 236 129 43 chr4 44090167 44090260 -111539860 + PB1D7 SINE Alu 1 101 -19 2 921 1221 192 188 6 chr4 44090402 44090722 -111539398 - RLTR30 LTR ERV1 0 379 2 2 921 507 33 0 0 chr4 44090950 44091011 -111539109 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 921 375 325 75 0 chr4 44091829 44091949 -111538171 - B1F1 SINE Alu -18 131 3 2 921 410 133 0 26 chr4 44092386 44092463 -111537657 + C-rich Low_complexity Low_complexity 1 75 0 2 921 975 142 0 0 chr4 44092476 44092638 -111537482 + (TCCCC)n Simple_repeat Simple_repeat 5 166 0 2 921 823 258 25 5 chr4 44092654 44092857 -111537263 - ID_B1 SINE B4 -17 207 1 2 921 1398 61 28 0 chr4 44092917 44093098 -111537022 - L1_Mus3 LINE L1 -203 6435 6250 2 921 513 298 6 80 chr4 44093408 44093583 -111536537 - RSINE1 SINE B4 -2 163 2 2 921 230 255 0 0 chr4 44093945 44093992 -111536128 + GA-rich Low_complexity Low_complexity 2 48 0 2 921 465 223 155 0 chr4 44094169 44094272 -111535848 - U1 snRNA snRNA -46 119 1 2 921 744 286 73 24 chr4 44094421 44094668 -111535452 + MER2 DNA MER2_type 87 345 0 2 921 465 214 107 0 chr4 44094956 44095059 -111535061 - ID_B1 SINE B4 0 224 111 2 921 216 257 97 79 chr4 44094964 44095078 -111535042 - PB1 SINE Alu -7 120 5 2 921 1242 41 7 0 chr4 44095757 44095903 -111534217 + B1_Mus1 SINE Alu 2 148 0 2 921 410 237 0 4 chr4 44097765 44097856 -111532264 + MTC LTR MaLR 1 88 -308 2 921 214 205 0 0 chr4 44097893 44097932 -111532188 + T-rich Low_complexity Low_complexity 1 39 0 2 921 1013 68 135 0 chr4 44097945 44098093 -111532027 - B2_Mm2 SINE B2 -26 169 2 2 921 9406 141 78 32 chr4 44098093 44098183 -111531937 - L1_Mur3 LINE L1 -2604 3276 3184 2 921 219 36 0 0 chr4 44098183 44098211 -111531909 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 921 9406 141 78 32 chr4 44098211 44099867 -111530253 - L1_Mur3 LINE L1 -2697 3183 1431 2 921 4433 92 5 11 chr4 44099867 44100484 -111529636 - L1_Mus3 LINE L1 -1 6637 6025 2 921 1008 95 0 26 chr4 44100484 44100636 -111529484 - B1_Mur4 SINE Alu -1 149 2 2 921 9406 191 57 17 chr4 44100636 44101762 -111528358 - L1_Mur3 LINE L1 -4450 1430 281 2 921 192 40 0 0 chr4 44101861 44101886 -111528234 + (CAA)n Simple_repeat Simple_repeat 1 25 0 2 921 2893 61 6 3 chr4 44102056 44102503 -111527617 + L1_Mus2 LINE L1 6197 6566 0 2 921 305 184 368 0 chr4 44102618 44102705 -111527415 + B1F2 SINE Alu 1 119 -30 2 921 1187 55 7 0 chr4 44102757 44102903 -111527217 - B1_Mus2 SINE Alu 0 147 1 2 921 2036 121 51 6 chr4 44103326 44103641 -111526479 - ORR1A4 LTR MaLR 0 329 1 2 921 370 280 77 84 chr4 44104020 44104278 -111525842 - MLT1D LTR MaLR -56 411 139 2 921 1191 282 77 47 chr4 44104292 44104657 -111525463 - MTEa LTR MaLR -3 376 1 2 921 233 353 15 0 chr4 44104824 44104892 -111525228 - BC1_Mm scRNA scRNA -82 70 2 2 921 359 294 158 78 chr4 44104895 44105217 -111524903 + MLT2B4 LTR ERVL 51 364 -50 2 921 248 0 31 0 chr4 44105263 44105295 -111524825 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2 921 387 0 0 0 chr4 44105476 44105519 -111524601 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 921 270 81 0 0 chr4 44105713 44105750 -111524370 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 921 443 261 9 9 chr4 44105750 44105866 -111524254 - ID_B1 SINE B4 0 224 109 2 921 407 273 45 15 chr4 44105866 44105884 -111524236 - B1F1 SINE Alu 0 149 12 2 921 423 253 11 11 chr4 44106153 44106241 -111523879 + RSINE1 SINE B4 3 90 -75 2 921 1513 32 26 11 chr4 44106374 44106563 -111523557 - B2_Mm1t SINE B2 -1 192 1 2 921 252 59 0 0 chr4 44106668 44106702 -111523418 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 921 974 110 75 0 chr4 44106738 44106884 -111523236 + B2_Mm2 SINE B2 2 158 -37 2 921 432 0 0 0 chr4 44106885 44106933 -111523187 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 2 921 1283 36 133 0 chr4 44107153 44107318 -111522802 - B2_Mm2 SINE B2 -6 189 3 2 921 488 301 36 7 chr4 44107388 44107525 -111522595 - RSINE1 SINE B4 -23 142 2 2 921 323 250 71 0 chr4 44107621 44107705 -111522415 - B1F SINE Alu -11 138 49 2 921 375 23 0 0 chr4 44108055 44108099 -111522021 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 921 182 122 143 0 chr4 44108155 44108204 -111521916 + L4 LINE RTE 268 323 -1706 2 921 989 293 123 0 chr4 44108291 44108625 -111521495 + MTEa LTR MaLR 5 379 0 2 921 992 76 45 0 chr4 44108800 44108932 -111521188 - B1_Mus1 SINE Alu -10 138 1 2 921 281 267 0 9 chr4 44110264 44110370 -111519750 + CT-rich Low_complexity Low_complexity 4 108 0 2 921 579 199 97 19 chr4 44110450 44110627 -111519493 - B3A SINE B2 -10 206 10 2 921 291 304 37 37 chr4 44110555 44110637 -111519483 - RSINE1 SINE B4 -83 82 1 2 921 218 265 86 29 chr4 44110637 44110705 -111519415 - ID_B1 SINE B4 -69 155 84 2 921 284 265 84 47 chr4 44111290 44111397 -111518723 + PB1 SINE Alu 1 111 -16 2 921 382 315 60 81 chr4 44111409 44111644 -111518476 + B4A SINE B4 8 237 -55 2 921 736 202 0 0 chr4 44111724 44111853 -111518267 - B1_Mur1 SINE Alu -15 134 6 2 921 605 243 134 75 chr4 44111861 44112048 -111518072 - B3A SINE B2 0 198 1 2 921 338 261 42 32 chr4 44112108 44112203 -111517917 + PB1D10 SINE Alu 13 108 -9 2 921 410 302 80 19 chr4 44112233 44112395 -111517725 + Tigger7 DNA MER2_type 658 829 -1662 2 921 1550 185 80 0 chr4 44112504 44112829 -111517291 - ORR1B1 LTR MaLR 0 394 44 2 921 320 311 111 0 chr4 44112829 44112964 -111517156 + Tigger7 DNA MER2_type 2333 2482 -9 2 921 321 250 13 0 chr4 44113554 44113630 -111516490 + ID_B1 SINE B4 78 154 -70 2 921 636 232 81 70 chr4 44113628 44113813 -111516307 + B3A SINE B2 7 193 -5 2 921 683 229 161 26 chr4 44113903 44114096 -111516024 + ID_B1 SINE B4 6 224 0 2 921 1089 43 65 0 chr4 44114324 44114462 -111515658 - B1_Mus2 SINE Alu 0 147 1 2 921 1282 82 16 0 chr4 44114463 44114646 -111515474 - B2_Mm2 SINE B2 -4 191 6 2 921 314 169 0 0 chr4 44114695 44114754 -111515366 + RMER19B LTR ERVK 832 890 -12 2 921 346 269 0 0 chr4 44114757 44114835 -111515285 + RSINE1 SINE B4 27 104 -61 2 921 265 297 0 0 chr4 44114859 44114933 -111515187 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 921 303 161 18 0 chr4 44115048 44115104 -111515016 + MER34A LTR ERV1 5 61 -510 2 921 240 35 0 0 chr4 44115105 44115134 -111514986 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 921 4176 36 14 10 chr4 44115138 44115645 -111514475 - L1_Mus2 LINE L1 0 6566 6058 2 921 236 311 80 53 chr4 44115881 44116068 -111514052 + MER34A1 LTR ERV1 384 575 -12 2 921 239 330 62 0 chr4 44116090 44116202 -111513918 + MIR SINE MIR 112 230 -32 2 921 534 257 9 0 chr4 44116283 44116396 -111513724 + PB1D7 SINE Alu 1 114 -6 2 921 362 269 169 15 chr4 44117226 44117362 -111512758 + Tigger1 DNA MER2_type 35 191 -2227 2 921 606 279 91 76 chr4 44117491 44117821 -111512299 + ORR1E LTR MaLR 19 353 -6 2 921 607 249 84 10 chr4 44117832 44118035 -111512085 + Tigger1 DNA MER2_type 392 609 -1809 2 921 224 175 0 0 chr4 44118191 44118231 -111511889 + B4A SINE B4 1 40 -252 2 921 366 143 0 0 chr4 44118495 44118558 -111511562 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 921 233 268 122 10 chr4 44118591 44118689 -111511431 + ID_B1 SINE B4 113 221 -3 2 921 594 177 153 0 chr4 44118724 44118848 -111511272 + B1_Mur1 SINE Alu 2 144 -5 2 921 549 202 8 50 chr4 44118858 44118978 -111511142 + B1_Mur2 SINE Alu 2 116 -33 2 921 253 276 157 28 chr4 44119030 44119246 -111510874 + Charlie4a DNA MER1_type 149 392 -116 2 921 621 295 78 16 chr4 44119784 44120029 -111510091 + B4A SINE B4 11 270 -22 2 921 483 241 28 49 chr4 44120114 44120258 -111509862 + ID_B1 SINE B4 82 222 -2 2 921 411 137 0 0 chr4 44120775 44120848 -111509272 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 921 380 222 10 62 chr4 44121234 44121330 -111508790 + B1_Mus1 SINE Alu 1 91 -57 2 921 1172 53 5 96 chr4 44122235 44122361 -111507759 + B2_Mm1t SINE B2 1 122 -71 2 921 1725 21 0 0 chr4 44122361 44122554 -111507566 - B2_Mm1a SINE B2 0 193 1 2 921 1172 53 5 96 chr4 44122554 44122615 -111507505 + B2_Mm1t SINE B2 123 171 -22 2 921 28 29 0 0 chr4 44122683 44122718 -111507402 + AT_rich Low_complexity Low_complexity 1 35 0 2 921 694 202 88 41 chr4 44123949 44124119 -111506001 - B3 SINE B2 -30 186 9 3 921 341 248 165 0 chr4 44124701 44124810 -111505310 + MLT1F LTR MaLR 1 127 -421 3 921 240 86 0 0 chr4 44124868 44124903 -111505217 + (AGGGGG)n Simple_repeat Simple_repeat 2 36 0 3 921 382 36 36 0 chr4 44125272 44125328 -111504792 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 921 320 234 120 9 chr4 44125453 44125561 -111504559 + MLT1E1A LTR MaLR 546 665 -15 3 921 204 158 0 0 chr4 44126054 44126092 -111504028 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 921 257 329 14 0 chr4 44126160 44126233 -111503887 - RSINE1 SINE B4 -47 118 45 3 921 714 223 48 29 chr4 44126367 44126575 -111503545 - ID_B1 SINE B4 -11 213 2 3 921 902 219 58 10 chr4 44127175 44127382 -111502738 - ID_B1 SINE B4 -7 217 1 3 921 338 248 25 8 chr4 44127826 44127944 -111502176 - ID_B1 SINE B4 -17 207 88 3 921 309 242 82 62 chr4 44129077 44129174 -111500946 + B1F1 SINE Alu 1 99 -50 3 921 560 218 60 8 chr4 44129805 44129939 -111500181 + B1_Mur1 SINE Alu 4 144 -5 3 921 546 117 232 9 chr4 44130015 44130127 -111499993 + B1F SINE Alu 3 139 -10 3 921 345 24 0 0 chr4 44130127 44130169 -111499951 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 921 198 103 0 0 chr4 44130285 44130314 -111499806 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 921 1544 165 18 0 chr4 44130439 44130712 -111499408 - RMER4B LTR ERVK -45 540 263 3 921 414 276 0 28 chr4 44130731 44130839 -111499281 - PB1D10 SINE Alu -5 112 8 3 921 1992 38 0 0 chr4 44130932 44131168 -111498952 - L1Md_F2 LINE L1 0 6582 6347 3 921 7947 41 0 11 chr4 44131168 44131530 -111498590 + L1Md_F2 LINE L1 4941 5302 -581 3 921 1248 31 161 0 chr4 44131530 44131677 -111498443 + B2_Mm1t SINE B2 2 160 -33 3 921 207 0 0 0 chr4 44131677 44131700 -111498420 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 921 1248 31 161 0 chr4 44131700 44131713 -111498407 + B2_Mm1t SINE B2 161 186 -7 3 921 7947 37 8 4 chr4 44131713 44132423 -111497697 + L1Md_F2 LINE L1 5303 6009 -573 3 921 22 35 0 0 chr4 44132621 44132650 -111497470 + AT_rich Low_complexity Low_complexity 1 29 0 3 921 734 266 53 37 chr4 44132747 44133047 -111497073 + Lx8 LINE L1 7016 7320 -153 3 921 1131 185 36 53 chr4 44133079 44133382 -111496738 - Lx7 LINE L1 -3 7693 7396 3 921 7152 160 84 11 chr4 44133380 44134813 -111495307 - L1_Mur3 LINE L1 -2764 3116 1579 3 921 4307 183 65 19 chr4 44134801 44135683 -111494437 - L1_Mur3 LINE L1 -6413 1315 394 3 921 2063 141 22 3 chr4 44135683 44136040 -111494080 - RLTR14 LTR ERV1 0 382 19 3 921 252 330 0 0 chr4 44136232 44136332 -111493788 + GA-rich Low_complexity Low_complexity 2 101 0 3 921 391 275 176 13 chr4 44137122 44137416 -111492704 + MT2B LTR ERVL 85 601 0 3 921 271 174 318 9 chr4 44137470 44137580 -111492540 - Lx8 LINE L1 -364 7109 6966 3 921 600 220 34 51 chr4 44137682 44137859 -111492261 + B4 SINE B4 50 223 -69 3 921 1167 131 34 0 chr4 44137875 44138050 -111492070 + B2_Mm1t SINE B2 2 182 -11 3 921 989 81 13 7 chr4 44138370 44138519 -111491601 + B2_Mm2 SINE B2 31 180 -15 3 921 218 75 50 0 chr4 44139655 44139695 -111490425 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 3 921 290 45 23 0 chr4 44139699 44139743 -111490377 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 3 921 21 0 0 0 chr4 44140937 44140958 -111489162 + AT_rich Low_complexity Low_complexity 1 21 0 3 921 247 228 152 0 chr4 44142651 44142743 -111487377 + PB1D10 SINE Alu 10 115 -2 3 921 237 173 214 12 chr4 44143066 44143151 -111486969 - B1_Mus2 SINE Alu -3 114 18 3 921 337 274 10 31 chr4 44143580 44143678 -111486442 - PB1D10 SINE Alu -13 104 9 3 921 635 314 70 8 chr4 44144703 44144944 -111485176 + B4A SINE B4 1 256 -36 3 921 632 210 48 0 chr4 44145138 44145262 -111484858 + B1_Mur2 SINE Alu 5 134 -15 3 921 356 305 107 0 chr4 44145448 44145579 -111484541 + B4A SINE B4 148 292 0 3 921 619 202 115 8 chr4 44145689 44145819 -111484301 + B1_Mur4 SINE Alu 1 144 -6 3 921 300 111 0 0 chr4 44145821 44145866 -111484254 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 3 921 603 40 0 0 chr4 44145856 44145930 -111484190 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 921 345 221 67 79 chr4 44145950 44146116 -111484004 + L1MB8 LINE L1 6004 6164 -10 3 921 496 149 217 43 chr4 44146189 44146333 -111483787 + B2_Mm2 SINE B2 1 171 -24 3 921 207 0 0 0 chr4 44146333 44146356 -111483764 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 921 496 149 217 43 chr4 44146356 44146372 -111483748 + B2_Mm2 SINE B2 172 189 -6 3 921 293 340 0 70 chr4 44146703 44146817 -111483303 - RSINE1 SINE B4 0 165 60 3 921 427 294 20 0 chr4 44147308 44147410 -111482710 - PB1D10 SINE Alu -7 110 7 3 921 385 326 41 28 chr4 44148031 44148176 -111481944 + RSINE1 SINE B4 11 157 -8 3 921 4100 132 56 31 chr4 44148391 44149129 -111480991 + RMER6A LTR ERVK 1 756 0 3 921 417 285 95 0 chr4 44149782 44149919 -111480201 + RSINE1 SINE B4 3 152 -13 3 921 906 224 53 10 chr4 44149965 44150172 -111479948 + B3 SINE B2 1 216 0 3 921 210 118 0 0 chr4 44150607 44150641 -111479479 + (A)n Simple_repeat Simple_repeat 1 34 0 3 921 355 273 17 96 chr4 44150654 44150832 -111479288 - RSINE1 SINE B4 0 165 2 3 921 454 227 0 30 chr4 44150874 44150974 -111479146 - B1_Mus2 SINE Alu -27 120 24 3 921 1038 98 48 85 chr4 44150995 44151184 -111478936 - B2_Mm2 SINE B2 -11 184 3 3 921 527 259 7 20 chr4 44151198 44151344 -111478776 - B1F2 SINE Alu -5 144 1 3 921 216 281 141 0 chr4 44152198 44152262 -111477858 + B1F SINE Alu 19 91 -58 3 921 3343 21 37 3 chr4 44152262 44152645 -111477475 - MTA_Mm LTR MaLR 0 396 1 3 921 9145 38 4 2 chr4 44152645 44153741 -111476379 - MTA_Mm-int LTR MaLR 0 1098 1 3 921 3356 18 37 3 chr4 44153741 44154124 -111475996 - MTA_Mm LTR MaLR 0 396 1 3 921 215 107 89 0 chr4 44154205 44154261 -111475859 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 3 921 265 246 15 15 chr4 44154352 44154418 -111475702 + GA-rich Low_complexity Low_complexity 3 68 0 3 921 346 259 205 53 chr4 44154422 44154573 -111475547 + B3A SINE B2 4 177 -21 3 921 258 282 103 60 chr4 44154664 44154781 -111475339 + RSINE1 SINE B4 11 132 -33 3 921 556 303 65 15 chr4 44156551 44156583 -111473537 + ID SINE ID 1 31 -193 3 921 3223 58 0 5 chr4 44156583 44156980 -111473140 + MTA_Mm LTR MaLR 1 395 -1 3 921 556 303 65 15 chr4 44156980 44157148 -111472972 + ID_B1 SINE B4 32 211 -13 3 921 448 65 0 0 chr4 44157146 44157208 -111472912 - B1_Mm SINE Alu 0 147 86 3 921 248 286 83 0 chr4 44157287 44157412 -111472708 - PB1D10 SINE Alu 0 148 11 3 921 1955 209 132 8 chr4 44157481 44157952 -111472168 + RMER1B Other Other 474 1064 -2 3 921 462 229 182 43 chr4 44158046 44158233 -111471887 - B3 SINE B2 -2 214 2 3 921 227 219 117 52 chr4 44158296 44158373 -111471747 + ID4_ SINE ID 2 83 0 3 921 1241 107 42 11 chr4 44158595 44158784 -111471336 + B2_Mm2 SINE B2 1 195 0 3 921 214 260 176 20 chr4 44158846 44158948 -111471172 - B3A SINE B2 -80 118 1 3 921 254 140 16 81 chr4 44159064 44159126 -111470994 - L1MC LINE L1 -2415 5467 5410 3 921 374 338 90 14 chr4 44159435 44159579 -111470541 - RSINE1 SINE B4 -1 164 10 3 921 876 197 37 37 chr4 44159663 44159879 -111470241 + B3 SINE B2 1 216 0 3 921 420 249 215 0 chr4 44159966 44160143 -111469977 - ID_B1 SINE B4 -2 222 8 3 921 21 36 0 0 chr4 44160299 44160327 -111469793 + AT_rich Low_complexity Low_complexity 1 28 0 3 921 297 293 27 0 chr4 44160852 44160927 -111469193 - RSINE1 SINE B4 -33 132 56 3 921 807 218 65 30 chr4 44161023 44161222 -111468898 + B3 SINE B2 1 206 -10 3 921 252 255 99 9 chr4 44161534 44161645 -111468475 - L1M5 LINE L1 -1584 4562 4442 3 921 237 273 80 0 chr4 44162360 44162448 -111467672 - L1MC4a LINE L1 -709 7173 7079 3 921 362 250 217 43 chr4 44162481 44162619 -111467501 - RSINE1 SINE B4 -1 164 3 3 921 853 154 229 0 chr4 44163001 44163176 -111466944 + B3 SINE B2 2 216 0 3 921 718 333 41 44 chr4 44163699 44164063 -111466057 - MLT1A LTR MaLR -6 368 6 3 921 2138 158 119 13 chr4 44164431 44164900 -111465220 - RLTR12B LTR ERVK -9 519 1 3 921 1471 54 38 0 chr4 44165684 44165870 -111464250 + B2_Mm2 SINE B2 3 195 0 3 921 593 292 69 5 chr4 44166455 44166658 -111463462 - B3 SINE B2 0 216 1 3 921 570 208 0 70 chr4 44166745 44166874 -111463246 + ID_B1 SINE B4 105 224 0 3 921 873 16 141 52 chr4 44166887 44167001 -111463119 + B1_Mus2 SINE Alu 1 123 -24 3 921 255 31 0 0 chr4 44167001 44167033 -111463087 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 3 921 873 16 141 52 chr4 44167033 44167053 -111463067 + B1_Mus2 SINE Alu 124 147 0 3 921 461 248 10 0 chr4 44167285 44167386 -111462734 - ID_B1 SINE B4 -24 200 99 3 921 355 262 38 0 chr4 44167429 44167509 -111462611 - B1_Mur4 SINE Alu -59 91 9 3 921 325 256 197 0 chr4 44167941 44168058 -111462062 + MTEa LTR MaLR 51 190 -189 3 921 404 199 105 11 chr4 44168204 44168323 -111461797 + B4 SINE B4 111 240 -52 3 921 461 134 366 0 chr4 44168446 44168580 -111461540 + URR1A DNA MER1_type 1 183 -43 3 921 264 231 14 71 chr4 44168598 44168668 -111461452 + B4 SINE B4 10 75 -217 3 921 26 30 0 0 chr4 44169038 44169071 -111461049 + AT_rich Low_complexity Low_complexity 1 33 0 3 921 364 274 149 35 chr4 44169118 44169292 -111460828 + B3A SINE B2 3 196 -2 3 921 438 274 8 17 chr4 44169423 44169542 -111460578 - B3A SINE B2 -68 130 13 3 921 719 187 97 0 chr4 44170149 44170283 -111459837 - B1_Mur1 SINE Alu -1 148 2 4 921 221 30 61 0 chr4 44170322 44170355 -111459765 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 921 552 200 0 0 chr4 44170366 44170481 -111459639 + (CATA)n Simple_repeat Simple_repeat 3 117 0 4 921 415 277 45 0 chr4 44170481 44170593 -111459527 - B1_Mur2 SINE Alu -32 117 1 4 921 255 274 32 97 chr4 44170512 44170605 -111459515 - MT2B LTR ERVL -362 239 153 4 921 1144 68 0 13 chr4 44170671 44170821 -111459299 + B1_Mus1 SINE Alu 1 148 0 4 921 224 30 30 0 chr4 44170825 44170858 -111459262 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 922 351 221 0 55 chr4 44172432 44172523 -111457597 + PB1D10 SINE Alu 32 117 0 4 922 1607 47 5 0 chr4 44173087 44173279 -111456841 + B2_Mm1t SINE B2 1 193 0 4 922 613 234 0 38 chr4 44173710 44173843 -111456277 + RSINE1 SINE B4 4 131 -34 4 922 229 283 132 0 chr4 44174010 44174116 -111456004 + PB1D9 SINE Alu 1 120 0 4 922 255 156 538 0 chr4 44174317 44174427 -111455693 - B3 SINE B2 -47 169 1 4 922 278 258 60 30 chr4 44174951 44175051 -111455069 + MLT1E1A LTR MaLR 170 272 -408 4 922 408 226 18 45 chr4 44175296 44175407 -111454713 - PB1D9 SINE Alu -1 119 12 4 922 293 264 14 14 chr4 44175568 44175641 -111454479 + ID4 SINE ID 2 74 -9 4 922 288 228 49 98 chr4 44175723 44175825 -111454295 + MTD LTR MaLR 1 97 -322 4 922 556 199 125 37 chr4 44175825 44175961 -111454159 + B1_Mur1 SINE Alu 2 149 0 4 922 641 232 73 7 chr4 44176008 44176280 -111453840 + MTD LTR MaLR 103 419 0 4 922 232 292 83 0 chr4 44177037 44177109 -111453011 - PB1D10 SINE Alu -37 80 3 4 922 380 269 126 0 chr4 44177619 44177738 -111452382 + ID_B1 SINE B4 88 221 -3 4 922 577 259 141 65 chr4 44177973 44178221 -111451899 + B4 SINE B4 4 270 -22 4 922 275 327 36 0 chr4 44179183 44179293 -111450827 + RSINE1 SINE B4 3 116 -49 4 922 22 35 0 0 chr4 44180355 44180384 -111449736 + GC_rich Low_complexity Low_complexity 1 29 0 4 922 22 0 0 0 chr4 44180870 44180892 -111449228 + GC_rich Low_complexity Low_complexity 1 22 0 4 922 1038 8 0 0 chr4 44180982 44181101 -111449019 + (TCCCC)n Simple_repeat Simple_repeat 5 123 0 4 922 21 0 0 0 chr4 44181184 44181205 -111448915 + GC_rich Low_complexity Low_complexity 1 21 0 4 922 569 192 10 0 chr4 44182313 44182412 -111447708 - B1_Mur3 SINE Alu -49 100 1 4 922 411 73 0 0 chr4 44182612 44182667 -111447453 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 922 237 257 157 17 chr4 44183147 44183262 -111446858 + L2 LINE L2 1674 1804 -1615 4 922 322 286 47 9 chr4 44183492 44183598 -111446522 + PB1D10 SINE Alu 7 116 -1 4 922 260 329 121 26 chr4 44183655 44183886 -111446234 - L1M5 LINE L1 -1477 4669 4417 4 922 370 319 190 26 chr4 44184186 44184575 -111445545 - L1M5 LINE L1 -2154 3992 3540 4 922 1137 62 7 7 chr4 44184632 44184779 -111445341 - B1_Mus2 SINE Alu 0 147 1 4 922 459 236 124 47 chr4 44185345 44185474 -111444646 + B1F2 SINE Alu 4 142 -7 4 922 405 0 0 0 chr4 44186369 44186414 -111443706 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 922 468 111 142 44 chr4 44186969 44187082 -111443038 + RMER4B LTR ERVK 119 242 -343 4 922 289 222 41 85 chr4 44187143 44187284 -111442836 + RMER4B LTR ERVK 369 570 -41 4 922 288 0 0 0 chr4 44187284 44187316 -111442804 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 4 922 289 204 43 112 chr4 44187316 44187333 -111442787 + RMER4B LTR ERVK 571 588 -23 4 922 1285 101 17 0 chr4 44187418 44187596 -111442524 + B2_Mm2 SINE B2 1 181 -14 4 922 365 122 9 0 chr4 44187647 44187711 -111442409 + B2_Mm2 SINE B2 47 114 -102 4 922 22 0 0 0 chr4 44187724 44187746 -111442374 + AT_rich Low_complexity Low_complexity 1 22 0 4 922 1205 198 143 7 chr4 44189103 44189403 -111440717 + MTD LTR MaLR 1 341 -78 4 922 325 195 0 25 chr4 44189538 44189617 -111440503 + MTD LTR MaLR 335 411 -8 4 922 519 297 0 0 chr4 44189901 44190012 -111440108 + RSINE1 SINE B4 38 148 -17 4 922 1370 232 70 12 chr4 44190033 44190360 -111439760 + MTE2b LTR MaLR 23 368 -11 4 922 1164 235 167 29 chr4 44190363 44190458 -111439662 + L1MB7 LINE L1 5387 5485 -699 4 922 438 236 106 0 chr4 44190458 44190581 -111439539 + B1_Mus1 SINE Alu 1 136 -12 4 922 297 20 0 57 chr4 44190582 44190635 -111439485 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 922 1164 235 167 29 chr4 44190635 44191015 -111439105 + L1MB7 LINE L1 5486 5930 -254 4 922 2528 60 35 3 chr4 44191149 44191465 -111438655 + ORR1A2 LTR MaLR 1 326 -1 4 922 599 270 66 0 chr4 44191592 44191744 -111438376 + RSINE1 SINE B4 4 165 0 4 922 330 233 32 32 chr4 44191987 44192080 -111438040 + MLT1F2 LTR MaLR 55 147 -413 4 922 321 249 19 0 chr4 44192793 44192889 -111437231 - B1_Mur1 SINE Alu -5 144 46 4 922 678 274 151 14 chr4 44192876 44193161 -111436959 - MER21B LTR ERV1 -224 639 316 4 922 321 264 42 0 chr4 44193269 44193341 -111436779 + U4 snRNA snRNA 4 78 -67 4 922 417 151 0 0 chr4 44195318 44195404 -111434716 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 922 200 259 0 17 chr4 44195632 44195691 -111434429 + G-rich Low_complexity Low_complexity 5 62 0 4 922 2021 210 97 30 chr4 44195843 44196581 -111433539 + Lx9 LINE L1 5279 6109 -1535 4 922 966 193 47 5 chr4 44196648 44196841 -111433279 + Lx9 LINE L1 6309 6509 -1135 4 922 276 113 264 0 chr4 44196843 44196896 -111433224 + RMER15 LTR ERVL 509 575 0 4 922 1049 55 6 99 chr4 44197181 44197343 -111432777 - B1_Mm SINE Alu 0 147 1 4 922 652 138 31 31 chr4 44197358 44197485 -111432635 - B1_Mur1 SINE Alu -10 139 13 4 922 1298 80 28 0 chr4 44197929 44198105 -111432015 + B2_Mm2 SINE B2 1 181 -14 4 922 365 169 276 8 chr4 44198142 44198282 -111431838 + B2_Mm2 SINE B2 47 192 -1 4 922 354 271 44 44 chr4 44198908 44199043 -111431077 - ID_B1 SINE B4 -3 221 87 4 922 237 135 0 0 chr4 44199069 44199121 -111430999 + (A)n Simple_repeat Simple_repeat 1 52 0 4 922 489 234 35 18 chr4 44199148 44199261 -111430859 + B1_Mus2 SINE Alu 2 116 -31 4 922 180 0 0 0 chr4 44199357 44199377 -111430743 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 922 227 284 29 35 chr4 44199594 44199709 -111430411 + B4 SINE B4 2 120 -172 4 922 240 35 0 0 chr4 44199856 44199885 -111430235 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 922 245 316 122 0 chr4 44200548 44200646 -111429474 - RSINE1 SINE B4 -10 155 46 4 922 309 308 7 76 chr4 44200956 44200972 -111429148 + ID_B1 SINE B4 69 202 -22 4 922 555 226 23 31 chr4 44200972 44201100 -111429020 + B1_Mur1 SINE Alu 1 127 -22 4 922 358 287 100 47 chr4 44201155 44201305 -111428815 + RSINE1 SINE B4 3 160 -5 4 922 411 217 65 65 chr4 44201729 44201754 -111428366 + B4A SINE B4 1 25 -267 4 922 2523 86 3 0 chr4 44201754 44202080 -111428040 + ORR1A2 LTR MaLR 1 327 0 4 922 411 217 65 65 chr4 44202080 44202177 -111427943 + B4A SINE B4 26 123 -169 4 922 354 308 9 18 chr4 44202408 44202517 -111427603 + PB1 SINE Alu 18 125 -2 4 922 303 300 0 0 chr4 44202525 44202605 -111427515 + ID4 SINE ID 2 81 -2 4 922 757 220 95 34 chr4 44202721 44202984 -111427136 + B4A SINE B4 1 279 -13 4 922 560 27 0 13 chr4 44202998 44203073 -111427047 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 922 421 319 60 30 chr4 44203090 44203355 -111426765 - B4A SINE B4 -18 274 2 4 922 983 113 7 40 chr4 44203385 44203533 -111426587 + B1_Mus1 SINE Alu 1 143 -5 4 922 1709 21 0 0 chr4 44203695 44203887 -111426233 + B2_Mm1a SINE B2 2 193 0 4 922 266 238 60 48 chr4 44203889 44203973 -111426147 + L2 LINE L2 2022 2106 -1313 4 922 382 233 40 4 chr4 44203975 44204084 -111426036 - L1M4 LINE L1 -562 5622 5513 4 922 387 238 137 87 chr4 44204454 44204615 -111425505 - B4A SINE B4 -123 169 1 4 922 217 171 24 0 chr4 44204887 44204928 -111425192 + PB1D9 SINE Alu 17 58 -62 4 922 518 208 0 45 chr4 44204947 44205058 -111425062 + B1_Mur4 SINE Alu 43 148 -2 4 922 1179 68 0 0 chr4 44205481 44205628 -111424492 + B1_Mm SINE Alu 1 147 0 4 922 228 226 19 0 chr4 44206181 44206234 -111423886 + B1F2 SINE Alu 4 57 -92 4 922 572 285 40 15 chr4 44206236 44206422 -111423698 - B3A SINE B2 -6 189 19 4 922 273 250 42 0 chr4 44206421 44206493 -111423627 + B1F1 SINE Alu 75 149 0 4 922 1096 22 66 0 chr4 44206643 44206780 -111423340 + B1_Mus2 SINE Alu 2 147 0 4 922 210 150 0 0 chr4 44206780 44206820 -111423300 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 4 922 604 218 144 61 chr4 44206855 44207036 -111423084 + B3A SINE B2 3 198 0 4 922 1144 52 0 0 chr4 44207046 44207181 -111422939 + B1_Mus1 SINE Alu 1 135 -13 4 922 392 37 19 0 chr4 44207181 44207235 -111422885 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 4 922 1215 91 11 0 chr4 44207260 44207446 -111422674 + B2_Mm2 SINE B2 8 195 0 4 922 338 321 0 0 chr4 44207563 44207655 -111422465 + ID4_ SINE ID 6 97 -55 4 922 215 300 86 0 chr4 44207700 44207770 -111422350 + ID4 SINE ID 3 78 -5 4 922 647 191 9 0 chr4 44208083 44208198 -111421922 - B1_Mur4 SINE Alu -16 134 19 4 922 726 159 72 0 chr4 44208245 44208383 -111421737 + B1_Mus1 SINE Alu 1 148 0 4 922 1113 89 6 12 chr4 44208419 44208589 -111421531 + B2_Mm2 SINE B2 20 188 -7 4 922 827 290 125 106 chr4 44208590 44209718 -111420402 + L1_Mur3 LINE L1 1559 2708 -3172 4 922 2075 51 4 0 chr4 44209720 44209977 -111420143 - L1Md_F3 LINE L1 -14 6570 6313 4 922 1558 44 0 0 chr4 44209983 44210165 -111419955 + L1Md_F3 LINE L1 6113 6294 -290 4 922 399 272 71 71 chr4 44210164 44210433 -111419687 + L1_Mur3 LINE L1 2697 2965 -2915 4 922 318 231 131 28 chr4 44210444 44210551 -111419569 + PB1D9 SINE Alu 1 118 -2 4 922 288 169 0 0 chr4 44210555 44210632 -111419488 + A-rich Low_complexity Low_complexity 1 77 0 5 922 586 226 120 31 chr4 44210633 44210925 -111419195 + L1_Mur3 LINE L1 2994 3311 -2569 4 922 1186 75 0 0 chr4 44210935 44211081 -111419039 - B1_Mus2 SINE Alu 0 147 2 5 922 331 207 12 35 chr4 44211183 44211268 -111418852 - B1_Mur2 SINE Alu -1 148 66 5 922 532 148 219 8 chr4 44211269 44211392 -111418728 + B1_Mur3 SINE Alu 1 149 0 5 922 1507 72 0 0 chr4 44211604 44211764 -111418356 + B2_Mm1t SINE B2 1 160 -33 5 922 258 32 0 0 chr4 44211764 44211795 -111418325 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 922 1507 72 0 0 chr4 44211795 44211827 -111418293 + B2_Mm1t SINE B2 161 192 -1 5 922 278 331 73 20 chr4 44211990 44212141 -111417979 - RSINE1 SINE B4 -4 161 3 5 922 239 85 61 41 chr4 44212394 44212443 -111417677 + B3 SINE B2 165 214 -2 5 922 282 246 98 8 chr4 44212804 44212927 -111417193 - L1MB4 LINE L1 -16 6164 6031 5 922 690 185 272 0 chr4 44213169 44213331 -111416789 - B3 SINE B2 -10 206 1 5 922 1400 95 21 0 chr4 44213512 44213702 -111416418 + B2_Mm2 SINE B2 1 194 -1 5 922 549 200 114 8 chr4 44213731 44213862 -111416258 + B1_Mur4 SINE Alu 6 150 0 5 922 228 316 10 48 chr4 44214182 44214285 -111415835 - MT2B2 LTR ERVL -293 291 193 5 922 358 250 0 0 chr4 44214213 44214293 -111415827 - PB1D10 SINE Alu -10 107 28 5 922 616 285 139 18 chr4 44214375 44215008 -111415112 + L1M2 LINE L1 4642 5370 -773 5 922 674 139 174 0 chr4 44215008 44215123 -111414997 + B1_Mus2 SINE Alu 1 135 -12 5 922 530 87 0 12 chr4 44215128 44215210 -111414910 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 5 922 537 291 164 32 chr4 44215210 44215265 -111414855 + L1M2 LINE L1 5331 5386 -494 5 922 490 287 32 26 chr4 44215277 44215431 -111414689 + ID_B1 SINE B4 3 157 -67 5 922 325 260 87 0 chr4 44215472 44215576 -111414544 + PB1D10 SINE Alu 5 117 0 5 922 222 268 18 0 chr4 44215644 44215700 -111414420 - PB1D7 SINE Alu -49 100 44 5 922 471 73 45 79 chr4 44215740 44215829 -111414291 - B2_Mm2 SINE B2 -108 87 2 5 922 241 260 39 0 chr4 44216021 44216098 -111414022 + ID2 SINE ID 2 81 -2 5 922 427 258 72 50 chr4 44216370 44216509 -111413611 - RSINE1 SINE B4 -3 162 21 5 922 611 198 0 31 chr4 44216555 44216674 -111413446 + B1_Mus2 SINE Alu 1 117 -30 5 922 315 0 0 0 chr4 44216674 44216709 -111413411 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 922 347 101 29 0 chr4 44216720 44216789 -111413331 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 5 922 209 359 28 0 chr4 44217003 44217109 -111413011 - L2 LINE L2 -1067 2352 2244 5 922 684 139 92 35 chr4 44217173 44217315 -111412805 + B1_Mur4 SINE Alu 1 150 0 5 922 204 253 0 25 chr4 44217319 44217400 -111412720 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 5 922 264 259 17 0 chr4 44217462 44217520 -111412600 + ID_B1 SINE B4 158 216 -8 5 922 224 350 0 20 chr4 44217516 44217615 -111412505 + ID_B1 SINE B4 80 176 -48 5 922 332 243 6 2 chr4 44217530 44217616 -111412504 + PB1D10 SINE Alu 12 99 -21 5 922 796 192 20 0 chr4 44218178 44218324 -111411796 - B1_Mur2 SINE Alu 0 149 1 5 922 754 145 2 0 chr4 44218471 44218605 -111411515 + B1_Mus2 SINE Alu 9 144 -6 5 922 420 278 157 28 chr4 44218937 44219192 -111410928 + L1M5 LINE L1 5388 5675 -489 5 922 247 244 25 37 chr4 44219323 44219404 -111410716 + L1M5 LINE L1 5748 5827 -351 5 922 315 0 0 0 chr4 44219930 44219965 -111410155 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 922 230 316 18 0 chr4 44219974 44220031 -111410089 + ID4_ SINE ID 16 73 -10 5 922 751 184 0 7 chr4 44220219 44220356 -111409764 - B1_Mus2 SINE Alu -2 145 10 5 922 472 289 43 31 chr4 44220391 44220552 -111409568 + RSINE1 SINE B4 2 164 -1 5 922 698 172 287 0 chr4 44220571 44220728 -111409392 - B3 SINE B2 -14 202 1 5 922 26 0 0 0 chr4 44220728 44220754 -111409366 + AT_rich Low_complexity Low_complexity 1 26 0 5 922 1108 129 47 0 chr4 44220754 44220925 -111409195 + B2_Mm1t SINE B2 1 179 -14 5 922 358 119 321 27 chr4 44220991 44221103 -111409017 + B2_Mm2 SINE B2 47 191 -4 5 922 235 184 20 0 chr4 44221269 44221318 -111408802 + B1F SINE Alu 21 70 -79 5 922 460 177 31 10 chr4 44221343 44221440 -111408680 - B1_Mus2 SINE Alu 0 147 49 5 922 353 226 31 41 chr4 44221491 44221588 -111408532 + B3A SINE B2 41 136 -62 5 922 449 165 0 149 chr4 44221592 44221699 -111408421 + PB1D9 SINE Alu 14 104 -16 5 922 289 244 83 98 chr4 44221699 44221724 -111408396 + ID_B1 SINE B4 95 224 0 5 922 308 242 102 112 chr4 44222351 44222453 -111407667 + L1M4 LINE L1 4304 4418 -1728 5 922 822 162 42 0 chr4 44222453 44222595 -111407525 + B1_Mur4 SINE Alu 1 148 -2 5 922 308 242 102 112 chr4 44222595 44222697 -111407423 + L1M4 LINE L1 4419 4506 -1640 5 922 639 282 40 11 chr4 44222739 44222915 -111407205 + ID_B1 SINE B4 2 182 -42 5 922 389 293 74 15 chr4 44222977 44223112 -111407008 + RSINE1 SINE B4 22 164 -1 5 922 484 267 118 0 chr4 44223281 44223468 -111406652 + ID_B1 SINE B4 2 210 -14 5 922 532 292 15 0 chr4 44223525 44223662 -111406458 + B1F SINE Alu 1 139 -10 5 922 858 91 0 0 chr4 44223761 44223882 -111406238 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 5 922 305 248 131 69 chr4 44224031 44224124 -111405996 + B1F1 SINE Alu 3 104 -45 5 922 2626 76 0 3 chr4 44224124 44224452 -111405668 - ORR1A2 LTR MaLR 0 327 1 5 922 305 248 131 69 chr4 44224452 44224488 -111405632 + B1F1 SINE Alu 105 140 -9 5 922 216 244 0 0 chr4 44224549 44224594 -111405526 + GA-rich Low_complexity Low_complexity 3 47 0 5 922 559 298 111 5 chr4 44224722 44224921 -111405199 + ID_B1 SINE B4 2 221 -3 5 922 1423 79 11 0 chr4 44224928 44225118 -111405002 + B2_Mm1t SINE B2 1 192 -1 5 922 1022 189 31 0 chr4 44225292 44225488 -111404632 - B3 SINE B2 0 216 15 5 922 766 174 240 39 chr4 44225936 44226115 -111404005 + B3 SINE B2 2 216 0 5 922 1536 58 37 0 chr4 44226235 44226423 -111403697 - B2_Mm2 SINE B2 0 195 1 5 922 342 0 0 0 chr4 44226506 44226544 -111403576 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 922 476 229 0 24 chr4 44227060 44227145 -111402975 + RSINE1 SINE B4 2 84 -81 5 922 231 36 0 0 chr4 44227183 44227211 -111402909 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 5 922 244 303 85 64 chr4 44227302 44227443 -111402677 + RSINE1 SINE B4 12 155 -10 5 922 273 109 0 0 chr4 44227447 44227493 -111402627 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 922 21 57 0 0 chr4 44227493 44227528 -111402592 + AT_rich Low_complexity Low_complexity 1 35 0 5 922 539 301 52 0 chr4 44227537 44227690 -111402430 - RSINE1 SINE B4 -2 163 3 5 922 275 0 0 28 chr4 44227704 44227740 -111402380 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 922 236 200 3 20 chr4 44227795 44227855 -111402265 + PB1D10 SINE Alu 70 149 0 5 922 337 336 0 93 chr4 44227857 44228008 -111402112 + B4A SINE B4 1 137 -155 5 922 468 267 25 16 chr4 44228195 44228317 -111401803 - ID_B1 SINE B4 -12 212 90 5 922 1309 70 42 21 chr4 44228632 44228823 -111401297 - B2_Mm2 SINE B2 0 195 1 5 922 1141 62 0 27 chr4 44228866 44229014 -111401106 - B1_Mus2 SINE Alu -2 145 2 5 922 939 155 118 52 chr4 44229158 44229369 -111400751 - URR1B DNA MER1_type 0 225 1 5 922 252 62 0 0 chr4 44230014 44230046 -111400074 - MT2_Mm LTR ERVL -3 490 459 5 922 405 0 0 0 chr4 44230390 44230435 -111399685 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 922 726 76 221 33 chr4 44230521 44230643 -111399477 + B1_Mus1 SINE Alu 4 148 0 5 922 242 200 0 39 chr4 44230926 44230978 -111399142 + GA-rich Low_complexity Low_complexity 4 53 0 5 922 213 328 49 0 chr4 44231065 44231126 -111398994 + B4A SINE B4 87 150 -142 5 922 385 164 40 14 chr4 44231274 44231348 -111398772 - ID4 SINE ID -7 76 1 5 922 568 302 19 12 chr4 44231366 44231527 -111398593 + MIR SINE MIR 79 240 -22 5 922 548 301 5 65 chr4 44231558 44231757 -111398363 + B4 SINE B4 86 272 -20 5 922 1135 43 0 7 chr4 44231838 44231980 -111398140 + B1_Mus1 SINE Alu 7 147 -1 5 922 464 219 49 110 chr4 44231841 44232005 -111398115 + B4A SINE B4 94 247 -45 5 922 318 301 115 0 chr4 44232221 44232334 -111397786 - ID_B1 SINE B4 0 224 99 5 922 1231 48 0 0 chr4 44232372 44232519 -111397601 - B1_Mus2 SINE Alu 0 147 1 5 922 1340 96 21 0 chr4 44232565 44232753 -111397367 + B2_Mm2 SINE B2 1 192 -3 5 922 245 319 25 42 chr4 44233015 44233133 -111396987 - MT2_Mm LTR ERVL -311 290 175 5 922 303 260 134 10 chr4 44233038 44233135 -111396985 - PB1D10 SINE Alu 0 117 9 5 922 269 325 34 120 chr4 44233059 44233234 -111396886 - ID_B1 SINE B4 -53 171 12 5 922 685 135 18 18 chr4 44233168 44233274 -111396846 + B1_Mus1 SINE Alu 36 142 -6 5 922 648 38 0 0 chr4 44233274 44233353 -111396767 + (GGAGA)n Simple_repeat Simple_repeat 2 80 0 5 922 544 319 29 0 chr4 44233392 44233530 -111396590 + RSINE1 SINE B4 3 144 -21 5 922 333 0 0 0 chr4 44233546 44233583 -111396537 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 922 495 232 344 0 chr4 44233644 44233795 -111396325 - B3 SINE B2 -13 203 1 5 922 844 95 16 8 chr4 44233873 44234000 -111396120 + B2_Mm2 SINE B2 2 129 -66 5 922 325 301 0 0 chr4 44234024 44234097 -111396023 - ID SINE ID -151 73 1 5 922 854 166 7 7 chr4 44234167 44234313 -111395807 - B1_Mus1 SINE Alu -1 147 2 5 922 309 262 104 19 chr4 44234583 44234745 -111395375 - ID_B1 SINE B4 0 224 6 5 922 2872 165 87 27 chr4 44234801 44235423 -111394697 + RMER17B LTR ERVK 300 958 0 6 922 289 87 0 0 chr4 44235423 44235469 -111394651 + B1_Mur4 SINE Alu 103 148 -2 6 922 1082 36 14 0 chr4 44235492 44235630 -111394490 + (GAAA)n Simple_repeat Simple_repeat 3 142 0 6 922 361 242 246 15 chr4 44235710 44235840 -111394280 + RSINE1 SINE B4 2 161 -4 6 922 684 260 78 78 chr4 44235878 44236023 -111394097 + ID_B1 SINE B4 3 156 -68 6 922 1494 31 5 72 chr4 44236023 44236231 -111393889 + B2_Mm2 SINE B2 1 194 -1 6 922 684 260 78 78 chr4 44236231 44236302 -111393818 + ID_B1 SINE B4 157 219 -5 6 922 189 74 0 0 chr4 44236374 44236401 -111393719 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 6 922 207 0 0 0 chr4 44236432 44236455 -111393665 + (A)n Simple_repeat Simple_repeat 1 23 0 6 922 266 310 26 17 chr4 44236463 44236578 -111393542 + PB1D10 SINE Alu 1 116 -1 6 922 485 291 38 54 chr4 44236601 44236786 -111393334 + B3A SINE B2 11 192 -6 6 922 319 68 0 33 chr4 44237389 44237450 -111392670 + (TTTTG)n Simple_repeat Simple_repeat 1 59 0 6 922 1291 34 0 0 chr4 44237450 44237598 -111392522 - B1_Mus1 SINE Alu 0 148 1 6 922 523 286 97 0 chr4 44239309 44239505 -111390615 + ID_B1 SINE B4 2 216 -8 6 922 602 285 0 0 chr4 44239745 44239875 -111390245 - RSINE1 SINE B4 -33 132 3 6 922 23 33 0 0 chr4 44239974 44240004 -111390116 + AT_rich Low_complexity Low_complexity 1 30 0 6 922 214 206 61 45 chr4 44240459 44240525 -111389595 + ID4_ SINE ID 2 68 -15 6 922 531 248 8 0 chr4 44240739 44240864 -111389256 + ID_B1 SINE B4 98 223 -1 6 922 665 270 99 30 chr4 44240876 44241078 -111389042 + ID_B1 SINE B4 6 221 -3 6 922 778 103 111 0 chr4 44241153 44241279 -111388841 - B1_Mur4 SINE Alu -1 149 10 6 922 832 247 96 8 chr4 44241373 44241622 -111388498 - B4A SINE B4 -18 274 4 6 922 516 247 164 37 chr4 44242045 44242234 -111387886 + B3 SINE B2 3 215 -1 6 922 24 53 0 0 chr4 44242465 44242503 -111387617 + AT_rich Low_complexity Low_complexity 1 38 0 6 922 410 298 119 30 chr4 44242597 44242832 -111387288 - L1ME3B LINE L1 -164 6076 5821 6 922 284 241 181 0 chr4 44242843 44242926 -111387194 - PB1D10 SINE Alu -10 107 10 6 922 229 291 152 0 chr4 44242860 44242939 -111387181 - ID_B1 SINE B4 -56 168 78 6 922 357 286 243 5 chr4 44243047 44243265 -111386855 - B4A SINE B4 -18 274 5 6 922 243 0 0 0 chr4 44243327 44243354 -111386766 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 922 749 172 288 0 chr4 44243354 44243517 -111386603 - B3 SINE B2 -6 210 1 6 922 261 215 11 168 chr4 44243674 44243769 -111386351 + MT2B LTR ERVL 178 257 -344 6 922 676 186 0 33 chr4 44243685 44243807 -111386313 + B1_Mur2 SINE Alu 25 142 -7 6 922 294 291 25 0 chr4 44243826 44243905 -111386215 + ID4 SINE ID 2 82 -1 6 922 225 264 123 39 chr4 44243905 44244026 -111386094 - L1ME3B LINE L1 -654 5540 5407 6 922 261 83 0 0 chr4 44244048 44244084 -111386036 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 922 248 328 0 0 chr4 44244127 44244188 -111385932 - ID4 SINE ID 0 83 23 6 922 672 273 71 0 chr4 44244217 44244400 -111385720 + B3 SINE B2 15 210 -6 6 922 674 203 27 40 chr4 44244406 44244555 -111385565 + B1_Mm SINE Alu 1 147 0 6 922 207 100 0 0 chr4 44244555 44244585 -111385535 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 6 922 405 102 0 0 chr4 44244591 44244650 -111385470 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 922 238 231 108 0 chr4 44244703 44244768 -111385352 - PB1D10 SINE Alu -22 95 24 6 922 207 0 0 0 chr4 44245052 44245075 -111385045 + (A)n Simple_repeat Simple_repeat 1 23 0 6 922 320 232 24 39 chr4 44246070 44246210 -111383910 + MIR SINE MIR 41 180 -88 6 922 213 39 0 0 chr4 44246374 44246400 -111383720 + (CCCCG)n Simple_repeat Simple_repeat 2 27 0 6 922 200 111 0 22 chr4 44246511 44246557 -111383563 + (CGGGGG)n Simple_repeat Simple_repeat 4 48 0 6 922 339 105 0 0 chr4 44246611 44246668 -111383452 + (CGG)n Simple_repeat Simple_repeat 3 59 0 6 922 186 71 0 0 chr4 44246816 44246844 -111383276 + (CGG)n Simple_repeat Simple_repeat 3 30 0 6 922 33 25 0 0 chr4 44247005 44247045 -111383075 + GC_rich Low_complexity Low_complexity 1 40 0 6 922 192 290 16 31 chr4 44247988 44248052 -111382068 - L2c LINE L2 -50 3337 3275 6 922 197 33 0 32 chr4 44248159 44248190 -111381930 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 922 1230 35 0 0 chr4 44248237 44248378 -111381742 + B1_Mm SINE Alu 1 141 -6 6 922 216 0 0 0 chr4 44248380 44248404 -111381716 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 922 883 112 40 34 chr4 44248681 44248829 -111381291 - B1_Mur4 SINE Alu 0 150 2 6 922 607 176 32 0 chr4 44249241 44249366 -111380754 - BC1_Mm scRNA scRNA -23 129 1 6 922 299 296 18 18 chr4 44249381 44249491 -111380629 + L1_Rod LINE L1 5706 5815 -32 6 922 359 275 27 18 chr4 44249553 44249664 -111380456 + RSINE1 SINE B4 43 154 -11 6 922 1101 101 0 0 chr4 44249726 44249874 -111380246 + B1_Mus1 SINE Alu 1 148 0 6 922 266 180 40 0 chr4 44249903 44249953 -111380167 + B1F2 SINE Alu 8 59 -90 6 922 25 75 0 0 chr4 44249982 44250035 -111380085 + AT_rich Low_complexity Low_complexity 1 53 0 6 922 253 213 0 0 chr4 44250450 44250497 -111379623 + B3 SINE B2 1 47 -169 6 922 626 123 19 0 chr4 44250501 44250607 -111379513 + (TTTC)n Simple_repeat Simple_repeat 3 110 0 6 922 521 301 56 31 chr4 44250608 44250645 -111379475 - RSINE1 SINE B4 0 165 127 6 922 396 0 0 0 chr4 44250645 44250689 -111379431 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 922 521 301 56 31 chr4 44250689 44250812 -111379308 - RSINE1 SINE B4 -39 126 1 6 922 662 241 121 0 chr4 44250812 44250972 -111379148 + B3 SINE B2 37 216 0 6 922 383 185 69 69 chr4 44251034 44251121 -111378999 - B1_Mur2 SINE Alu 0 149 63 6 922 778 61 0 0 chr4 44251119 44251218 -111378902 + B1_Mus2 SINE Alu 49 147 0 6 922 710 273 27 65 chr4 44251270 44251532 -111378588 - L1MB3 LINE L1 -217 5966 5715 6 922 688 246 61 46 chr4 44251622 44251818 -111378302 - B3 SINE B2 -1 215 17 6 922 316 264 52 52 chr4 44252188 44252304 -111377816 - PB1D10 SINE Alu 0 117 2 6 922 264 296 14 0 chr4 44252481 44252552 -111377568 - ID4 SINE ID -9 74 3 6 922 419 239 52 17 chr4 44252615 44252730 -111377390 - PB1D7 SINE Alu -1 119 1 6 922 507 174 86 60 chr4 44252935 44253051 -111377069 - ID_B1 SINE B4 0 224 106 6 922 398 20 20 0 chr4 44253054 44253105 -111377015 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 922 1931 187 26 18 chr4 44253236 44253618 -111376502 - RLTR11A2 LTR ERVK 0 527 143 6 922 1209 62 0 0 chr4 44253636 44253782 -111376338 - B1_Mus2 SINE Alu 0 147 2 6 922 331 98 0 51 chr4 44253786 44253896 -111376224 - B2_Mm2 SINE B2 -1 194 47 6 922 1194 113 11 38 chr4 44253943 44254127 -111375993 - B2_Mm1t SINE B2 -14 179 1 6 922 618 147 223 8 chr4 44254127 44254257 -111375863 - RLTR11A2 LTR ERVK -369 158 1 6 922 225 0 0 0 chr4 44254304 44254329 -111375791 + (TCTA)n Simple_repeat Simple_repeat 3 27 0 6 922 524 331 0 6 chr4 44254353 44254511 -111375609 - RSINE1 SINE B4 -7 158 2 6 922 753 217 152 22 chr4 44254557 44254741 -111375379 - B3 SINE B2 -7 209 2 6 922 356 307 0 0 chr4 44254811 44254899 -111375221 + PB1D10 SINE Alu 1 88 -29 6 922 513 294 16 8 chr4 44254821 44254948 -111375172 + ID_B1 SINE B4 92 219 -5 6 922 326 272 95 75 chr4 44255055 44255075 -111375045 + ID_B1 SINE B4 69 210 -14 6 922 555 269 53 8 chr4 44255075 44255193 -111374927 + B1F2 SINE Alu 11 135 -14 6 922 216 0 0 0 chr4 44255193 44255217 -111374903 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 922 238 244 67 121 chr4 44255371 44255401 -111374719 + YREP_Mm Unknown Unknown 151 188 -1624 6 922 274 261 109 67 chr4 44255401 44255416 -111374704 - B1F SINE Alu 0 149 139 6 922 237 83 0 0 chr4 44255416 44255452 -111374668 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 6 922 238 244 67 121 chr4 44255452 44255555 -111374565 + YREP_Mm Unknown Unknown 189 291 -1521 6 922 297 239 45 0 chr4 44255544 44255611 -111374509 - ID SINE ID -152 72 3 6 922 576 225 8 16 chr4 44255793 44255915 -111374205 + B1_Mur2 SINE Alu 21 141 -8 6 922 357 267 47 57 chr4 44255944 44256171 -111373949 + L1MC4 LINE L1 7000 7227 -815 6 922 350 339 23 0 chr4 44256245 44256375 -111373745 + L2 LINE L2 1984 2116 -1303 6 922 241 335 90 19 chr4 44256394 44256549 -111373571 - MLT1F1 LTR MaLR -7 562 397 6 922 472 172 0 88 chr4 44256551 44256653 -111373467 + PB1D9 SINE Alu 28 120 0 6 922 1218 198 10 0 chr4 44256772 44256974 -111373146 - B3 SINE B2 -4 212 9 6 922 21 36 0 0 chr4 44256989 44257017 -111373103 + AT_rich Low_complexity Low_complexity 1 28 0 6 922 258 22 20 61 chr4 44257069 44257118 -111373002 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 922 535 310 8 0 chr4 44257118 44257247 -111372873 - ID_B1 SINE B4 -11 213 84 6 922 408 311 0 0 chr4 44257295 44257401 -111372719 - PB1 SINE Alu -5 122 17 6 922 269 280 13 13 chr4 44257413 44257489 -111372631 + CT-rich Low_complexity Low_complexity 2 77 0 6 922 612 101 0 0 chr4 44257490 44257579 -111372541 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 6 922 226 247 110 0 chr4 44257580 44257653 -111372467 - ID4_ SINE ID 0 83 3 6 922 400 259 36 36 chr4 44257663 44257803 -111372317 - B1F SINE Alu -9 140 1 6 922 974 145 78 6 chr4 44257962 44258142 -111371978 - B2_Mm1t SINE B2 0 193 1 6 922 22 0 0 0 chr4 44258167 44258189 -111371931 + AT_rich Low_complexity Low_complexity 1 22 0 7 922 305 365 9 0 chr4 44258392 44258507 -111371613 - PB1D10 SINE Alu -1 116 1 7 922 271 65 43 0 chr4 44258578 44258624 -111371496 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 922 212 116 139 0 chr4 44258708 44258751 -111371369 - B4 SINE B4 -243 49 1 7 922 414 209 0 0 chr4 44258772 44258901 -111371219 + (TG)n Simple_repeat Simple_repeat 1 129 0 7 922 447 267 72 20 chr4 44258905 44259058 -111371062 - RSINE1 SINE B4 0 165 5 7 922 1066 85 0 7 chr4 44259458 44259600 -111370520 + B1_Mus1 SINE Alu 3 143 -5 7 922 1352 74 16 5 chr4 44259613 44259799 -111370321 + B2_Mm1a SINE B2 1 189 -4 7 922 926 101 25 0 chr4 44259799 44259957 -111370163 + (GGA)n Simple_repeat Simple_repeat 2 163 0 7 922 470 192 40 0 chr4 44260868 44260967 -111369153 - MLT1C LTR MaLR -1 466 364 7 922 1270 92 0 36 chr4 44261192 44261384 -111368736 - B2_Mm2 SINE B2 -9 186 2 7 922 535 224 9 0 chr4 44261402 44261509 -111368611 - ID_B1 SINE B4 -33 191 84 7 922 255 297 26 34 chr4 44261550 44261667 -111368453 - ID4_ SINE ID -37 115 2 7 922 297 300 0 0 chr4 44261667 44261737 -111368383 - MLT1C LTR MaLR -344 123 54 7 922 291 180 605 45 chr4 44261796 44261910 -111368210 + B3 SINE B2 39 216 0 7 922 447 255 38 0 chr4 44261984 44262090 -111368030 - PB1D10 SINE Alu -7 110 1 7 922 234 0 0 0 chr4 44262299 44262325 -111367795 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 7 922 373 212 0 86 chr4 44262531 44262624 -111367496 + PB1D10 SINE Alu 33 117 0 7 922 363 78 0 0 chr4 44262763 44262814 -111367306 + (CCCCG)n Simple_repeat Simple_repeat 2 52 0 7 922 388 299 29 43 chr4 44262828 44262968 -111367152 - MIRc SINE MIR -14 254 117 7 922 201 108 0 0 chr4 44263852 44263889 -111366231 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 922 1276 61 12 0 chr4 44264044 44264208 -111365912 + B2_Mm2 SINE B2 2 167 -28 7 922 180 0 0 0 chr4 44264289 44264309 -111365811 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 922 537 248 17 8 chr4 44264319 44264437 -111365683 - RSINE1 SINE B4 -17 148 30 7 922 775 206 7 14 chr4 44264449 44264597 -111365523 - B1F SINE Alu -2 147 1 7 922 291 320 33 26 chr4 44264605 44264756 -111365364 - L1ME3 LINE L1 -60 6102 5951 7 922 330 250 36 0 chr4 44264852 44264936 -111365184 - L1ME3 LINE L1 -518 5655 5569 7 922 234 0 0 0 chr4 44265097 44265123 -111364997 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 922 231 36 0 0 chr4 44265834 44265862 -111364258 + (T)n Simple_repeat Simple_repeat 1 28 0 7 922 185 122 0 58 chr4 44265906 44265958 -111364162 + C-rich Low_complexity Low_complexity 2 50 0 7 922 288 0 0 0 chr4 44266182 44266214 -111363906 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 922 214 336 123 9 chr4 44266468 44266582 -111363538 - MIRc SINE MIR -50 218 92 7 922 690 179 13 70 chr4 44266583 44266739 -111363381 + B1_Mur2 SINE Alu 3 149 0 7 922 285 309 122 10 chr4 44267071 44267169 -111362951 - RSINE1 SINE B4 -56 109 1 7 922 591 311 122 30 chr4 44267260 44267595 -111362525 - ORR1D2 LTR MaLR -4 366 1 7 922 283 286 0 97 chr4 44267702 44267771 -111362349 - ID2 SINE ID -53 99 34 7 922 1165 193 389 26 chr4 44267771 44267956 -111362164 + MT2A LTR ERVL 1 194 -339 7 922 180 0 0 0 chr4 44267956 44267976 -111362144 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 7 922 1165 193 389 26 chr4 44267976 44268178 -111361942 + MT2A LTR ERVL 195 528 -5 7 922 283 295 0 93 chr4 44268178 44268215 -111361905 - ID2 SINE ID -50 33 2 7 922 282 344 21 10 chr4 44268448 44268545 -111361575 - LTR87 LTR ERVL? -502 122 25 7 922 502 279 154 17 chr4 44268677 44268910 -111361210 + L1ME3 LINE L1 5783 6047 -115 7 922 563 275 27 27 chr4 44268918 44269064 -111361056 + ID_B1 SINE B4 2 147 -77 7 922 950 168 0 0 chr4 44269067 44269216 -111360904 + B1_Mur2 SINE Alu 1 149 0 7 922 545 177 0 9 chr4 44269224 44269338 -111360782 + GA-rich Low_complexity Low_complexity 2 114 0 7 922 386 143 68 117 chr4 44269338 44269441 -111360679 + ID_B1 SINE B4 122 219 -5 7 922 1399 249 59 20 chr4 44269652 44269673 -111360447 + ORR1D2 LTR MaLR 1 19 -351 7 922 2465 97 144 19 chr4 44269673 44270095 -111360025 - IAPLTR2_Mm LTR ERVK 0 475 1 7 922 1399 249 59 20 chr4 44270095 44270429 -111359691 + ORR1D2 LTR MaLR 20 370 0 7 922 444 355 41 18 chr4 44270429 44270587 -111359533 - B4A SINE B4 -130 162 1 7 922 274 291 0 25 chr4 44270636 44270717 -111359403 + PB1D10 SINE Alu 38 116 -1 7 922 611 232 118 34 chr4 44270836 44271014 -111359106 - B3A SINE B2 -5 193 1 7 922 794 288 40 15 chr4 44271047 44271248 -111358872 + ID_B1 SINE B4 8 213 -11 7 922 411 21 0 0 chr4 44271248 44271296 -111358824 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 7 922 386 236 0 94 chr4 44271307 44271424 -111358696 + PB1D7 SINE Alu 2 107 -13 7 922 1059 71 0 0 chr4 44271895 44272036 -111358084 + (TC)n Simple_repeat Simple_repeat 2 142 0 7 922 845 199 27 54 chr4 44272036 44272052 -111358068 - B3A SINE B2 -17 181 167 7 922 216 0 0 0 chr4 44272052 44272076 -111358044 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 922 845 199 27 54 chr4 44272076 44272245 -111357875 - B3A SINE B2 -32 166 1 7 922 271 0 53 53 chr4 44272520 44272577 -111357543 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 7 922 1082 68 7 46 chr4 44272587 44272740 -111357380 - B1_Mus2 SINE Alu 0 147 1 7 922 929 88 96 0 chr4 44272745 44272881 -111357239 - B1_Mur4 SINE Alu 0 150 2 7 922 222 283 33 0 chr4 44272905 44272965 -111357155 - MIRm SINE MIR -205 71 10 7 922 26 82 0 0 chr4 44272982 44273043 -111357077 + AT_rich Low_complexity Low_complexity 1 61 0 7 922 243 122 0 0 chr4 44273535 44273584 -111356536 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 922 230 256 0 13 chr4 44273850 44273929 -111356191 + GA-rich Low_complexity Low_complexity 3 80 0 7 922 435 321 14 28 chr4 44273935 44274076 -111356044 + Lx8 LINE L1 7148 7286 -187 7 922 216 0 0 0 chr4 44274130 44274154 -111355966 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 922 343 321 62 47 chr4 44274419 44274612 -111355508 - RMER10A LTR ERVL -39 403 208 7 922 516 238 8 8 chr4 44274601 44274724 -111355396 + RMER5 LTR ERV1 221 343 -191 7 922 411 194 14 0 chr4 44274794 44274866 -111355254 - RSINE1 SINE B4 -89 76 4 7 922 1337 77 16 5 chr4 44274899 44275083 -111355037 + B2_Mm2 SINE B2 2 187 -8 7 922 265 350 48 40 chr4 44275106 44275231 -111354889 - MamRep564 Unknown Unknown -185 172 47 7 922 221 208 0 20 chr4 44275310 44275359 -111354761 - MIRb SINE MIR -48 220 173 7 922 234 345 11 11 chr4 44275376 44275467 -111354653 - Tigger12c DNA MER2_type -642 92 2 7 922 296 374 49 28 chr4 44275469 44275612 -111354508 + L2b LINE L2 3230 3375 0 7 922 229 291 114 0 chr4 44275777 44275856 -111354264 - B1F2 SINE Alu -50 99 12 7 922 1275 41 0 0 chr4 44276076 44276223 -111353897 - B1_Mus1 SINE Alu 0 148 2 7 922 1767 244 65 37 chr4 44276238 44276624 -111353496 - RMER5 LTR ERV1 0 534 137 7 922 659 223 21 35 chr4 44276624 44276768 -111353352 + B1_Mur2 SINE Alu 1 142 -7 7 922 1767 244 65 37 chr4 44276768 44276900 -111353220 - RMER5 LTR ERV1 -398 136 1 7 922 846 47 0 0 chr4 44276957 44277064 -111353056 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 7 922 467 82 356 30 chr4 44277064 44277165 -111352955 - B2_Mm2 SINE B2 -15 180 47 7 922 1206 113 11 33 chr4 44277220 44277403 -111352717 - B2_Mm1t SINE B2 -14 179 1 7 922 189 121 0 0 chr4 44277606 44277639 -111352481 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 922 2761 73 121 137 chr4 44277644 44278164 -111351956 + RLTR1B LTR ERV1 1 512 0 7 922 33 0 0 0 chr4 44278180 44278213 -111351907 + AT_rich Low_complexity Low_complexity 1 33 0 7 922 444 231 0 42 chr4 44278252 44278347 -111351773 + PB1D10 SINE Alu 14 104 -13 7 922 559 176 28 9 chr4 44278350 44278459 -111351661 + B1_Mus2 SINE Alu 37 147 0 7 922 405 0 0 0 chr4 44278825 44278870 -111351250 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 922 275 298 0 21 chr4 44278889 44278985 -111351135 - B3 SINE B2 -66 150 57 7 922 849 257 57 9 chr4 44278994 44279206 -111350914 - ID_B1 SINE B4 0 224 3 7 922 927 187 128 0 chr4 44279250 44279411 -111350709 + B3 SINE B2 1 166 -50 7 922 342 45 0 0 chr4 44279411 44279455 -111350665 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 922 927 187 128 0 chr4 44279455 44279480 -111350640 + B3 SINE B2 167 210 -6 7 922 441 289 145 21 chr4 44279542 44279687 -111350433 - RSINE1 SINE B4 0 165 3 7 922 528 258 169 11 chr4 44279735 44279919 -111350201 + B3 SINE B2 1 213 -3 7 922 443 153 55 101 chr4 44279927 44280036 -111350084 + B1_Mur1 SINE Alu 14 117 -32 7 922 743 182 13 0 chr4 44280057 44280211 -111349909 + CT-rich Low_complexity Low_complexity 1 156 0 7 922 184 30 61 0 chr4 44280221 44280254 -111349866 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 922 933 69 0 157 chr4 44280254 44280415 -111349705 - B1_Mus2 SINE Alu -9 138 2 7 922 707 244 60 43 chr4 44280493 44280775 -111349345 + B4A SINE B4 1 287 -5 7 922 641 288 31 44 chr4 44280877 44281102 -111349018 + ID_B1 SINE B4 2 223 -1 7 922 180 0 0 0 chr4 44281280 44281300 -111348820 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 922 877 69 0 51 chr4 44281642 44281661 -111348459 - B1_Mus2 SINE Alu -15 132 117 7 922 1236 68 0 0 chr4 44281661 44281824 -111348296 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 7 922 879 51 0 0 chr4 44281824 44281942 -111348178 - B1_Mm SINE Alu -28 119 2 7 922 367 222 0 120 chr4 44281831 44281964 -111348156 - MT2B LTR ERVL -337 264 148 8 922 265 47 23 23 chr4 44282118 44282162 -111347958 + (GGGAGA)n Simple_repeat Simple_repeat 5 48 0 8 922 213 312 42 21 chr4 44282719 44282863 -111347257 + L3 LINE CR1 4068 4214 -275 8 922 840 248 144 4 chr4 44283024 44283267 -111346853 - B4A SINE B4 -8 284 8 8 922 1042 206 148 30 chr4 44283353 44283600 -111346520 - ORR1D2 LTR MaLR 0 370 91 8 922 360 0 0 0 chr4 44283600 44283640 -111346480 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 922 1042 206 148 30 chr4 44283640 44283723 -111346397 - ORR1D2 LTR MaLR -280 90 2 8 922 2509 258 69 37 chr4 44283724 44284534 -111345586 - ORR1D2-int LTR MaLR -3 1367 532 8 922 577 156 0 84 chr4 44284629 44284748 -111345372 + B1_Mur2 SINE Alu 36 144 -5 8 922 277 24 48 0 chr4 44284748 44284790 -111345330 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 922 708 242 109 20 chr4 44284806 44285008 -111345112 - ID_B1 SINE B4 0 224 5 8 922 21 0 0 0 chr4 44285067 44285088 -111345032 + AT_rich Low_complexity Low_complexity 1 21 0 8 922 248 133 0 22 chr4 44285112 44285158 -111344962 - B2_Mm2 SINE B2 -104 91 47 8 922 578 157 10 10 chr4 44285222 44285325 -111344795 - B2_Mm1t SINE B2 -12 181 79 8 922 770 78 9 0 chr4 44285433 44285548 -111344572 + (TG)n Simple_repeat Simple_repeat 2 117 0 8 922 2048 158 16 29 chr4 44285595 44285749 -111344371 + ORR1D1 LTR MaLR 1 154 -220 8 922 2090 159 12 73 chr4 44285749 44286148 -111343972 - ORR1C1 LTR MaLR 0 378 4 8 922 2048 158 16 29 chr4 44286148 44286370 -111343750 + ORR1D1 LTR MaLR 155 372 -2 8 922 324 244 0 65 chr4 44286370 44286462 -111343658 - B4 SINE B4 -45 247 162 8 922 2130 137 72 62 chr4 44286494 44286884 -111343236 + ORR1B1 LTR MaLR 1 394 0 8 922 782 138 0 44 chr4 44286890 44287026 -111343094 + B1_Mur4 SINE Alu 10 139 -11 8 922 496 208 20 0 chr4 44287157 44287258 -111342862 - PB1D10 SINE Alu -8 109 7 8 922 351 0 0 0 chr4 44287312 44287351 -111342769 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 922 725 248 19 48 chr4 44287390 44287598 -111342522 - B4A SINE B4 -8 284 83 8 922 1161 42 28 0 chr4 44287600 44287742 -111342378 + B1_Mus2 SINE Alu 2 147 0 8 922 468 0 0 0 chr4 44287753 44287805 -111342315 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 8 922 579 248 7 29 chr4 44287805 44287942 -111342178 - ID_B1 SINE B4 -12 212 79 8 922 450 252 10 0 chr4 44288175 44288274 -111341846 + ID_B1 SINE B4 82 181 -43 8 922 235 281 0 15 chr4 44288458 44288523 -111341597 + CT-rich Low_complexity Low_complexity 2 65 0 8 922 306 106 0 0 chr4 44288560 44288607 -111341513 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 8 922 591 182 195 0 chr4 44288772 44288926 -111341194 + MTEa LTR MaLR 141 324 -55 8 922 556 286 0 58 chr4 44288974 44289145 -111340975 - RSINE1 SINE B4 -2 163 3 8 922 8097 33 0 5 chr4 44289209 44290156 -111339964 + L1Md_T LINE L1 5641 6582 0 8 922 643 232 20 61 chr4 44290175 44290264 -111339856 + ID SINE ID 2 84 -140 8 922 308 319 32 0 chr4 44290264 44290358 -111339762 + PB1D10 SINE Alu 1 97 -20 8 922 216 0 0 0 chr4 44290372 44290396 -111339724 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 8 922 637 321 0 0 chr4 44290396 44290558 -111339562 + RSINE1 SINE B4 2 163 -2 8 922 863 297 7 37 chr4 44290565 44290601 -111339519 + B4 SINE B4 25 59 -233 8 922 833 102 222 31 chr4 44290601 44290763 -111339357 - B2_Mm2 SINE B2 0 195 3 8 922 863 297 7 37 chr4 44290763 44290995 -111339125 + B4 SINE B4 60 285 -7 8 922 228 35 0 0 chr4 44291071 44291100 -111339020 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 922 216 0 0 0 chr4 44291440 44291464 -111338656 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 922 1090 80 0 0 chr4 44291484 44291621 -111338499 - B1_Mus2 SINE Alu -10 137 1 8 922 228 292 14 14 chr4 44291880 44291953 -111338167 + BC1_Mm scRNA scRNA 15 87 -65 8 922 1421 67 6 0 chr4 44292772 44292950 -111337170 - B2_Mm1a SINE B2 -14 179 1 8 922 417 149 10 31 chr4 44292958 44293055 -111337065 + CT-rich Low_complexity Low_complexity 2 96 0 8 922 254 360 43 9 chr4 44293069 44293184 -111336936 - B1F SINE Alu -28 121 3 8 922 659 270 32 28 chr4 44293207 44293424 -111336696 + ID_B1 SINE B4 1 218 -6 8 922 502 244 7 73 chr4 44293444 44293581 -111336539 + RSINE1 SINE B4 2 129 -36 8 922 778 153 189 73 chr4 44293624 44293815 -111336305 + B3 SINE B2 1 213 -3 8 922 362 269 96 34 chr4 44293884 44294030 -111336090 + RSINE1 SINE B4 3 157 -8 8 922 549 219 26 0 chr4 44294260 44294374 -111335746 + PB1D10 SINE Alu 1 117 0 8 922 484 355 74 67 chr4 44294905 44295352 -111334768 + MLT1K LTR MaLR 124 573 -22 8 922 671 337 133 40 chr4 44295380 44295900 -111334220 + MLT1G3 LTR MaLR 18 585 -10 8 922 242 243 164 27 chr4 44295966 44296076 -111334044 + ID_B1 SINE B4 2 126 -98 8 922 243 0 0 0 chr4 44296106 44296133 -111333987 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 8 922 257 276 179 50 chr4 44296177 44296417 -111333703 - L1ME2z LINE L1 -411 6033 5763 8 922 1858 118 64 83 chr4 44296472 44296833 -111333287 + ORR1B1 LTR MaLR 41 394 0 8 922 434 344 18 0 chr4 44296852 44297015 -111333105 - L1ME2z LINE L1 -522 5642 5477 8 922 906 197 12 138 chr4 44297462 44297550 -111332570 + B3 SINE B2 1 60 -156 8 922 1690 21 0 0 chr4 44297550 44297738 -111332382 - B2_Mm1a SINE B2 -4 189 2 8 922 906 197 12 138 chr4 44297738 44297896 -111332224 + B3 SINE B2 61 216 0 8 922 507 281 41 0 chr4 44297912 44298033 -111332087 + B3A SINE B2 36 161 -37 8 922 324 70 0 0 chr4 44298334 44298377 -111331743 + (A)n Simple_repeat Simple_repeat 1 43 0 8 922 666 231 8 0 chr4 44298416 44298546 -111331574 + B1_Mur1 SINE Alu 2 132 -17 8 922 887 58 16 0 chr4 44298557 44298678 -111331442 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 8 922 334 311 66 20 chr4 44298678 44298875 -111331245 + MTE-int LTR MaLR 17 222 -1358 8 922 1046 63 0 0 chr4 44298889 44299031 -111331089 - B1_Mus1 SINE Alu 0 148 7 8 922 442 253 11 0 chr4 44299055 44299150 -111330970 - B3 SINE B2 -85 131 36 8 922 613 92 10 10 chr4 44299179 44299278 -111330842 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 8 922 369 0 0 0 chr4 44299281 44299322 -111330798 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 8 922 260 111 0 43 chr4 44299351 44299398 -111330722 - B2_Mm2 SINE B2 -104 91 47 8 922 304 64 21 0 chr4 44299449 44299496 -111330624 - B2_Mm1t SINE B2 -14 179 132 8 922 225 171 0 0 chr4 44299494 44299535 -111330585 - B2_Mm2 SINE B2 -153 42 2 8 922 189 0 0 0 chr4 44299590 44299611 -111330509 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 922 190 0 32 32 chr4 44299617 44299648 -111330472 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 8 922 309 26 0 0 chr4 44299718 44299756 -111330364 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 8 922 255 125 0 0 chr4 44299760 44299800 -111330320 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 922 382 171 195 0 chr4 44299809 44299891 -111330229 - B1_Mus1 SINE Alu -50 98 1 8 922 21 57 0 0 chr4 44299891 44299926 -111330194 + AT_rich Low_complexity Low_complexity 1 35 0 8 922 650 158 9 9 chr4 44299935 44300050 -111330070 + B1_Mur3 SINE Alu 2 116 -33 8 922 395 260 9 4 chr4 44300052 44300177 -111329943 + B1F2 SINE Alu 27 149 0 8 922 830 193 6 0 chr4 44300347 44300523 -111329597 + CT-rich Low_complexity Low_complexity 1 177 0 8 922 496 234 246 15 chr4 44300566 44300667 -111329453 - ORR1D1 LTR MaLR 0 374 231 8 922 423 98 0 0 chr4 44300667 44300728 -111329392 + (CAGG)n Simple_repeat Simple_repeat 3 63 0 8 922 496 259 227 17 chr4 44300728 44300861 -111329259 - ORR1D1 LTR MaLR -118 252 98 8 922 1292 64 14 117 chr4 44301191 44301230 -111328890 + B2_Mm2 SINE B2 1 39 -156 8 922 1330 98 22 0 chr4 44301230 44301414 -111328706 + B2_Mm1t SINE B2 1 188 -5 8 922 1292 64 14 117 chr4 44301414 44301587 -111328533 + B2_Mm2 SINE B2 40 191 -4 8 922 243 247 0 99 chr4 44301587 44301661 -111328459 + RLTR25A LTR ERVK 506 572 -531 8 922 729 122 0 25 chr4 44301595 44301713 -111328407 + B1_Mus2 SINE Alu 33 147 0 8 922 255 61 0 0 chr4 44301871 44301904 -111328216 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 922 479 239 8 34 chr4 44301922 44302039 -111328081 - RSINE1 SINE B4 -49 116 3 8 922 277 279 80 18 chr4 44302098 44302211 -111327909 - MER5A1 DNA MER1_type -2 164 45 8 923 258 271 99 36 chr4 44302532 44302643 -111327477 - PB1D9 SINE Alu -2 118 1 8 923 1212 112 0 83 chr4 44302673 44302837 -111327283 - B2_Mm2 SINE B2 -6 189 33 8 923 245 51 26 0 chr4 44302837 44302876 -111327244 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 923 1118 56 0 14 chr4 44302876 44303021 -111327099 - B1_Mus1 SINE Alu -4 144 2 8 923 1212 112 0 83 chr4 44303021 44303060 -111327060 - B2_Mm2 SINE B2 -163 32 3 8 923 345 100 0 0 chr4 44303067 44303117 -111327003 + (T)n Simple_repeat Simple_repeat 1 50 0 8 923 1242 41 0 0 chr4 44303117 44303263 -111326857 - B1_Mm SINE Alu 0 147 2 8 923 357 297 30 0 chr4 44303270 44303371 -111326749 - PB1D10 SINE Alu -5 112 9 8 923 536 198 8 57 chr4 44303410 44303533 -111326587 + B1_Mur1 SINE Alu 14 130 -19 8 923 324 0 0 0 chr4 44303534 44303570 -111326550 + (TTG)n Simple_repeat Simple_repeat 3 38 0 8 923 288 304 34 51 chr4 44303599 44303717 -111326403 - RSINE1 SINE B4 -47 118 3 8 923 465 19 0 0 chr4 44303840 44303894 -111326226 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 923 320 188 73 24 chr4 44303913 44303995 -111326125 - ID_B1 SINE B4 -12 212 127 8 923 1809 140 3 118 chr4 44304061 44304433 -111325687 + ORR1A4 LTR MaLR 1 329 0 8 923 277 226 29 19 chr4 44304450 44304554 -111325566 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 8 923 390 221 0 0 chr4 44304664 44304741 -111325379 - BC1_Mm scRNA scRNA -75 77 1 8 923 327 341 14 88 chr4 44304816 44304964 -111325156 + B4A SINE B4 3 139 -153 9 923 739 215 52 31 chr4 44305037 44305229 -111324891 + B3 SINE B2 1 196 -20 9 923 360 0 0 0 chr4 44305241 44305281 -111324839 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 923 549 44 0 0 chr4 44305373 44305441 -111324679 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 923 244 296 14 0 chr4 44305783 44305854 -111324266 - ID4 SINE ID -6 77 6 9 923 192 125 0 0 chr4 44305878 44305910 -111324210 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 9 923 457 320 0 38 chr4 44305910 44306043 -111324077 - B1F1 SINE Alu -20 129 2 9 923 682 246 14 91 chr4 44306096 44306164 -111323956 - ID_B1 SINE B4 -18 206 157 9 923 1211 54 0 0 chr4 44306164 44306311 -111323809 - B1_Mus2 SINE Alu 0 147 1 9 923 682 246 14 91 chr4 44306311 44306452 -111323668 - ID_B1 SINE B4 -68 156 13 9 923 327 245 196 0 chr4 44306567 44306669 -111323451 + B1F1 SINE Alu 1 122 -27 9 923 225 0 0 0 chr4 44306721 44306746 -111323374 + (T)n Simple_repeat Simple_repeat 1 25 0 9 923 1695 31 0 0 chr4 44306746 44306938 -111323182 - B2_Mm1a SINE B2 0 193 2 9 923 381 102 0 0 chr4 44306966 44307025 -111323095 + B3 SINE B2 1 59 -157 9 923 1143 76 0 7 chr4 44307454 44307600 -111322520 + B1_Mus2 SINE Alu 2 146 -1 9 923 297 283 160 10 chr4 44307729 44307829 -111322291 - PB1D10 SINE Alu -2 115 1 9 923 770 177 20 33 chr4 44308025 44308177 -111321943 - B1_Mur4 SINE Alu 0 150 1 9 923 279 0 0 0 chr4 44308211 44308242 -111321878 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 923 717 172 66 0 chr4 44308363 44308485 -111321635 - B3 SINE B2 -86 130 1 9 923 295 269 84 21 chr4 44308485 44308561 -111321559 - RSINE1 SINE B4 -81 84 3 9 923 219 69 0 0 chr4 44309192 44309221 -111320899 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 9 923 1201 61 0 0 chr4 44309227 44309374 -111320746 - B1_Mm SINE Alu 0 147 1 9 923 282 211 0 0 chr4 44309476 44309585 -111320535 + CT-rich Low_complexity Low_complexity 2 110 0 9 923 656 191 88 0 chr4 44310158 44310294 -111319826 - B1_Mur4 SINE Alu -1 149 2 9 923 1322 93 16 6 chr4 44310541 44310724 -111319396 - B2_Mm2 SINE B2 -7 188 4 9 923 1307 210 64 142 chr4 44310881 44311173 -111318947 - MTC LTR MaLR 0 421 109 9 923 690 244 112 15 chr4 44311173 44311369 -111318751 + B3 SINE B2 2 216 0 9 923 1307 210 64 142 chr4 44311369 44311449 -111318671 - MTC LTR MaLR -313 108 81 9 923 378 0 0 0 chr4 44311449 44311491 -111318629 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 923 1200 67 98 0 chr4 44311491 44311655 -111318465 - B2_Mm2 SINE B2 -14 181 2 9 923 1307 210 64 142 chr4 44311655 44311736 -111318384 - MTC LTR MaLR -341 80 3 9 923 1167 55 0 14 chr4 44312185 44312333 -111317787 - B1_Mus2 SINE Alu -1 146 1 9 923 201 147 0 0 chr4 44312483 44312517 -111317603 + (T)n Simple_repeat Simple_repeat 1 34 0 9 923 320 261 14 0 chr4 44312571 44312640 -111317480 - RSINE1 SINE B4 -91 74 5 9 923 462 302 14 0 chr4 44312811 44312950 -111317170 + RSINE1 SINE B4 8 148 -17 9 923 943 32 8 0 chr4 44313048 44313171 -111316949 - B1_Mus1 SINE Alu 0 148 25 9 923 378 184 136 0 chr4 44313257 44313382 -111316738 + Lx8 LINE L1 7329 7470 -3 9 923 29 28 0 0 chr4 44313385 44313421 -111316699 + AT_rich Low_complexity Low_complexity 1 36 0 9 923 857 59 29 36 chr4 44313460 44313600 -111316520 - L1Md_F2 LINE L1 0 6582 6444 9 923 209 259 0 33 chr4 44313685 44313745 -111316375 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 9 923 388 250 19 97 chr4 44314111 44314266 -111315854 - ID_B1 SINE B4 0 224 82 9 923 459 186 57 38 chr4 44315091 44315197 -111314923 - PB1D9 SINE Alu -1 119 12 9 923 969 104 30 0 chr4 44315451 44315586 -111314534 - B1_Mus1 SINE Alu -9 139 1 9 923 234 0 0 0 chr4 44315822 44315848 -111314272 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 923 415 233 39 70 chr4 44315848 44315977 -111314143 - RSINE1 SINE B4 -24 141 17 9 923 399 200 152 0 chr4 44315984 44316089 -111314031 - ID_B1 SINE B4 -2 222 102 9 923 294 256 197 0 chr4 44316089 44316101 -111314019 - B1F2 SINE Alu -1 148 9 9 923 483 98 21 52 chr4 44316183 44316280 -111313840 - PB1D9 SINE Alu 0 120 27 9 923 898 28 25 61 chr4 44316681 44316838 -111313282 + IAPLTR2a LTR ERVK 217 362 -49 9 923 285 135 0 0 chr4 44316865 44316917 -111313203 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 923 424 298 25 38 chr4 44316931 44317088 -111313032 - RSINE1 SINE B4 0 165 11 9 923 346 298 130 46 chr4 44317141 44317380 -111312740 - L2 LINE L2 -501 2918 2660 9 923 207 0 0 0 chr4 44317835 44317858 -111312262 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 923 1271 38 0 0 chr4 44317858 44318018 -111312102 - B2_Mm1t SINE B2 -33 160 1 9 923 550 276 30 30 chr4 44318066 44318264 -111311856 - B3A SINE B2 0 198 1 9 923 1205 42 0 0 chr4 44318304 44318446 -111311674 - B1_Mus2 SINE Alu -5 142 1 9 923 871 171 77 43 chr4 44318527 44318735 -111311385 - URR1B DNA MER1_type 0 225 11 9 923 229 285 112 16 chr4 44319099 44319224 -111310896 - B1F1 SINE Alu -8 141 5 9 923 201 288 0 17 chr4 44319248 44319308 -111310812 + (TATG)n Simple_repeat Simple_repeat 2 60 0 9 923 258 308 127 39 chr4 44319375 44319635 -111310485 - MTEb LTR MaLR 0 379 97 9 923 656 224 39 118 chr4 44320159 44320420 -111309700 - MTE2a LTR MaLR -148 271 3 9 923 23 33 0 0 chr4 44320495 44320525 -111309595 + AT_rich Low_complexity Low_complexity 1 30 0 9 923 1092 192 14 9 chr4 44320570 44320780 -111309340 - B3 SINE B2 -2 214 4 9 923 198 118 0 0 chr4 44320880 44320914 -111309206 + (T)n Simple_repeat Simple_repeat 1 34 0 9 923 293 324 86 0 chr4 44320927 44321032 -111309088 - Lx8 LINE L1 -202 7271 7158 9 923 556 206 135 63 chr4 44321129 44321336 -111308784 - B4A SINE B4 -36 256 35 9 923 429 262 32 24 chr4 44322164 44322289 -111307831 - B1F SINE Alu 0 149 24 9 923 880 99 21 21 chr4 44322555 44322700 -111307420 - B1_Mur4 SINE Alu 0 150 6 9 923 515 268 8 83 chr4 44322560 44322800 -111307320 - ID_B1 SINE B4 -2 222 1 9 923 638 181 52 0 chr4 44322870 44322986 -111307134 - B1_Mur1 SINE Alu -13 136 15 9 923 278 243 62 88 chr4 44322899 44323012 -111307108 - MT2B LTR ERVL -341 260 151 9 923 316 217 87 0 chr4 44324880 44324891 -111305229 - PB1D10 SINE Alu -1 116 17 9 923 316 222 148 0 chr4 44324891 44324972 -111305148 - ID_B1 SINE B4 -34 190 98 9 923 197 59 0 56 chr4 44325313 44325349 -111304771 + (TTTTTG)n Simple_repeat Simple_repeat 6 39 0 9 923 1041 115 7 0 chr4 44325349 44325497 -111304623 - B1_Mur3 SINE Alu 0 149 1 9 923 23 33 0 0 chr4 44325882 44325912 -111304208 + AT_rich Low_complexity Low_complexity 1 30 0 9 923 480 246 19 101 chr4 44326091 44326249 -111303871 - RSINE1 SINE B4 -17 148 4 9 923 279 0 0 0 chr4 44326675 44326706 -111303414 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 923 1238 35 0 0 chr4 44326713 44326856 -111303264 - B1_Mus2 SINE Alu -4 143 1 9 923 262 260 82 0 chr4 44327214 44327287 -111302833 - PB1D10 SINE Alu -1 116 38 9 923 230 56 0 27 chr4 44327302 44327339 -111302781 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 923 400 311 112 8 chr4 44327341 44327591 -111302529 - B4A SINE B4 -1 291 16 9 923 405 288 25 0 chr4 44327595 44327713 -111302407 - B1F SINE Alu -22 127 7 9 923 288 77 0 0 chr4 44327796 44327835 -111302285 + (TATG)n Simple_repeat Simple_repeat 1 39 0 9 923 426 308 42 0 chr4 44327839 44327959 -111302161 - RSINE1 SINE B4 -38 127 3 9 923 439 267 104 0 chr4 44328010 44328145 -111301975 - B1_Mur1 SINE Alu 0 149 1 9 923 645 246 90 0 chr4 44328152 44328319 -111301801 - ID_B1 SINE B4 -7 217 36 9 923 216 0 0 0 chr4 44328339 44328363 -111301757 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 9 923 642 283 125 20 chr4 44328368 44328671 -111301449 - L1MB2 LINE L1 -3 6168 5834 9 923 1858 181 170 24 chr4 44329679 44330143 -111299977 - MT2A LTR ERVL 0 533 2 9 923 549 177 138 0 chr4 44330557 44330687 -111299433 - B1_Mur3 SINE Alu 0 149 2 9 923 291 275 0 32 chr4 44331151 44331245 -111298875 + L1ME3A LINE L1 6050 6140 -33 9 923 340 169 0 25 chr4 44331254 44331333 -111298787 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 923 248 146 0 24 chr4 44331444 44331486 -111298634 + ID_B1 SINE B4 178 218 -6 9 923 240 306 56 40 chr4 44333391 44333517 -111296603 - MER20 DNA MER1_type -4 215 88 9 923 205 200 0 0 chr4 44333629 44333669 -111296451 + T-rich Low_complexity Low_complexity 1 40 0 9 923 550 254 141 0 chr4 44334257 44334442 -111295678 - ID_B1 SINE B4 -8 216 6 9 923 1212 47 0 0 chr4 44335510 44335658 -111294462 - B1_Mus1 SINE Alu 0 148 1 9 923 262 319 40 53 chr4 44336033 44336185 -111293935 + RSINE1 SINE B4 12 161 -4 9 923 339 50 0 37 chr4 44336197 44336259 -111293861 + B1_Mus2 SINE Alu 86 145 -2 9 923 335 253 0 22 chr4 44336327 44336416 -111293704 - BC1_Mm scRNA scRNA -63 89 3 9 923 915 133 7 0 chr4 44336433 44336576 -111293544 - B1_Mur4 SINE Alu -1 149 6 9 923 597 28 0 0 chr4 44336758 44336829 -111293291 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 923 210 174 0 0 chr4 44337355 44337401 -111292719 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 1 923 407 290 103 29 chr4 44337505 44337679 -111292441 - MER5A DNA MER1_type -1 188 2 1 923 659 170 7 41 chr4 44338975 44339122 -111290998 - B1_Mus1 SINE Alu -3 145 4 1 923 299 283 18 84 chr4 44338977 44339143 -111290977 - ID_B1 SINE B4 -5 219 65 1 923 246 267 122 69 chr4 44339274 44339307 -111290813 - Charlie1 DNA MER1_type -139 2642 2613 1 923 385 262 73 18 chr4 44339307 44339416 -111290704 + PB1D10 SINE Alu 1 115 -2 1 923 246 267 122 69 chr4 44339416 44339571 -111290549 - Charlie1 DNA MER1_type -169 2612 2444 1 923 578 253 41 19 chr4 44339666 44339847 -111290273 - B3A SINE B2 -4 212 33 1 923 372 162 12 24 chr4 44339957 44340039 -111290081 - Charlie1 DNA MER1_type -626 2155 2075 1 923 206 250 18 18 chr4 44340473 44340530 -111289590 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 923 269 238 0 0 chr4 44340537 44340600 -111289520 - Charlie1a DNA MER1_type -396 1059 997 1 923 432 233 39 0 chr4 44341169 44341272 -111288848 - ID_B1 SINE B4 0 224 118 1 923 222 259 17 0 chr4 44341407 44341465 -111288655 + PB1 SINE Alu 2 60 -67 1 923 535 226 44 0 chr4 44341527 44341664 -111288456 + B1F1 SINE Alu 3 145 -4 1 923 546 211 21 117 chr4 44341665 44341814 -111288306 + B3A SINE B2 13 149 -49 1 923 702 89 0 0 chr4 44341814 44341926 -111288194 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 923 546 211 21 117 chr4 44341926 44341964 -111288156 + B3A SINE B2 150 182 -16 1 923 180 0 0 0 chr4 44341965 44341985 -111288135 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 923 713 79 0 9 chr4 44342008 44342123 -111287997 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 923 220 343 78 71 chr4 44342295 44342449 -111287671 - MIR SINE MIR -64 198 44 1 923 465 42 42 0 chr4 44342613 44342685 -111287435 + (CTGGGG)n Simple_repeat Simple_repeat 6 80 0 1 923 198 0 0 0 chr4 44343405 44343427 -111286693 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 923 450 129 0 0 chr4 44343427 44343512 -111286608 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 923 285 51 0 0 chr4 44343626 44343665 -111286455 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 923 819 215 36 5 chr4 44343705 44343897 -111286223 + B3 SINE B2 4 201 -15 1 923 345 307 70 0 chr4 44343910 44344024 -111286096 - B1F1 SINE Alu -26 123 2 1 923 299 326 72 0 chr4 44344841 44344979 -111285141 - MIRb SINE MIR -97 171 24 1 923 389 259 183 0 chr4 44346059 44346190 -111283930 - RSINE1 SINE B4 0 165 11 1 923 358 238 12 0 chr4 44346408 44346488 -111283632 + ID4_ SINE ID 3 83 0 1 923 198 0 0 0 chr4 44346615 44346637 -111283483 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 923 387 69 42 0 chr4 44346637 44346708 -111283412 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 923 288 0 0 0 chr4 44346742 44346774 -111283346 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 923 522 91 0 0 chr4 44346774 44346850 -111283270 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 923 252 228 185 65 chr4 44346859 44346967 -111283153 - B1F2 SINE Alu -28 121 1 1 923 213 65 0 0 chr4 44347217 44347248 -111282872 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 923 254 89 0 62 chr4 44347531 44347579 -111282541 + PB1D7 SINE Alu 20 64 -56 1 923 346 277 43 43 chr4 44347597 44347714 -111282406 + PB1D7 SINE Alu 4 120 0 1 923 658 235 302 48 chr4 44347737 44348131 -111281989 + Lx8 LINE L1 6816 7309 -164 1 923 407 224 80 20 chr4 44348341 44348441 -111281679 - PB1D10 SINE Alu -9 108 3 1 923 213 39 0 0 chr4 44348453 44348479 -111281641 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 923 716 157 1 79 chr4 44348480 44348641 -111281479 - B1_Mus2 SINE Alu -1 149 1 1 923 615 279 0 7 chr4 44348846 44348994 -111281126 - B1F SINE Alu -2 147 1 1 923 604 210 29 0 chr4 44349195 44349333 -111280787 + B1_Mur2 SINE Alu 2 143 -6 1 923 415 241 11 0 chr4 44349348 44349435 -111280685 + RSINE1 SINE B4 5 92 -73 1 923 540 180 0 0 chr4 44349982 44350104 -111280016 + CT-rich Low_complexity Low_complexity 2 123 0 1 923 1185 90 85 0 chr4 44350105 44350282 -111279838 - B2_Mm1t SINE B2 0 193 2 1 923 216 0 0 0 chr4 44350671 44350695 -111279425 + (T)n Simple_repeat Simple_repeat 1 24 0 1 923 240 185 0 0 chr4 44351474 44351528 -111278592 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1 923 1220 55 0 0 chr4 44351542 44351688 -111278432 - B1_Mus2 SINE Alu 0 147 2 1 923 756 191 8 0 chr4 44351697 44351828 -111278292 - B1_Mus1 SINE Alu -6 142 11 1 923 348 261 16 94 chr4 44351736 44351863 -111278257 - MT2B LTR ERVL -344 257 141 1 923 447 257 80 13 chr4 44351916 44352066 -111278054 + HAL1 LINE L1 1585 1744 -763 1 923 1194 54 0 0 chr4 44352257 44352404 -111277716 + B1_Mus2 SINE Alu 1 147 0 1 923 35 0 0 0 chr4 44352404 44352439 -111277681 + AT_rich Low_complexity Low_complexity 1 35 0 1 923 446 202 0 12 chr4 44352676 44352756 -111277364 - ID4_ SINE ID -3 80 2 1 923 591 85 0 0 chr4 44352812 44352894 -111277226 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 923 279 239 15 0 chr4 44353732 44353799 -111276321 - ID4_ SINE ID -1 82 15 1 923 1066 192 0 33 chr4 44354028 44354243 -111275877 - B3 SINE B2 -7 209 2 1 923 381 98 49 0 chr4 44354636 44354697 -111275423 - B2_Mm2 SINE B2 -17 178 115 1 923 228 238 244 38 chr4 44354728 44354859 -111275261 - RSINE1 SINE B4 -6 159 2 1 923 491 195 36 66 chr4 44354873 44355010 -111275110 + B1F SINE Alu 16 148 -1 1 923 282 296 0 47 chr4 44355116 44355201 -111274919 + ID4 SINE ID 2 82 -1 1 923 798 136 114 0 chr4 44356522 44356654 -111273466 + B1_Mus2 SINE Alu 1 147 0 1 923 387 250 22 0 chr4 44357239 44357331 -111272789 + B3 SINE B2 123 216 0 1 923 650 253 12 12 chr4 44357363 44357527 -111272593 - RSINE1 SINE B4 0 165 2 1 923 564 89 0 0 chr4 44358558 44358637 -111271483 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 923 875 255 34 61 chr4 44359111 44359145 -111270975 - B4A SINE B4 -4 288 263 1 923 198 91 0 0 chr4 44359145 44359178 -111270942 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 923 875 255 34 61 chr4 44359178 44359439 -111270681 - B4A SINE B4 -30 262 1 1 923 961 66 15 0 chr4 44359461 44359597 -111270523 - B1_Mus2 SINE Alu -1 146 9 1 923 306 0 0 0 chr4 44360448 44360482 -111269638 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 923 581 190 64 21 chr4 44360493 44360633 -111269487 - B3 SINE B2 -70 146 1 1 923 224 154 0 0 chr4 44361096 44361135 -111268985 - B1_Mus1 SINE Alu -109 39 1 1 923 454 321 14 14 chr4 44361134 44361276 -111268844 - ID_B1 SINE B4 0 224 83 1 923 601 322 46 71 chr4 44361325 44361580 -111268540 - B4 SINE B4 -18 274 26 1 923 1968 130 6 64 chr4 44361580 44361926 -111268194 - ORR1A3 LTR MaLR 0 326 1 1 923 601 322 46 71 chr4 44361926 44361951 -111268169 - B4 SINE B4 -267 25 1 1 923 28 29 0 0 chr4 44362010 44362045 -111268075 + AT_rich Low_complexity Low_complexity 1 35 0 1 923 300 183 17 0 chr4 44362494 44362554 -111267566 - ID4 SINE ID -11 72 12 1 923 328 252 34 59 chr4 44363417 44363535 -111266585 + PB1D10 SINE Alu 2 116 -1 1 923 255 306 0 0 chr4 44363548 44363610 -111266510 + ID SINE ID 22 83 -141 1 923 295 239 56 0 chr4 44364059 44364130 -111265990 - B1F1 SINE Alu -67 82 8 1 923 41907 9 2 6 chr4 44364705 44371291 -111258829 - L1Md_A LINE L1 0 6582 25 1 923 1025 222 30 0 chr4 44371393 44371596 -111258524 + B3 SINE B2 2 210 -6 1 923 489 268 16 8 chr4 44371887 44372015 -111258105 - RSINE1 SINE B4 -33 132 4 1 923 931 31 127 45 chr4 44372193 44372327 -111257793 + B1_Mm SINE Alu 3 147 0 1 923 2083 143 70 3 chr4 44372348 44372706 -111257414 - ORR1C2 LTR MaLR 0 384 3 1 923 2468 200 67 18 chr4 44372710 44373311 -111256809 - ORR1C2-int LTR MaLR -3 1506 877 1 923 288 320 24 104 chr4 44373398 44373562 -111256558 + RSINE1 SINE B4 2 152 -13 1 923 947 230 28 19 chr4 44374372 44374585 -111255535 - B3 SINE B2 0 216 2 1 923 369 271 0 10 chr4 44374591 44374688 -111255432 - PB1D10 SINE Alu -5 112 17 1 923 385 198 11 44 chr4 44374782 44374872 -111255248 - PB1D10 SINE Alu -1 116 30 1 923 263 277 36 12 chr4 44374873 44374957 -111255163 - ID_B1 SINE B4 -28 196 111 1 923 319 280 40 0 chr4 44375569 44375644 -111254476 + B1F SINE Alu 60 137 -12 1 923 30 27 0 0 chr4 44375941 44375978 -111254142 + AT_rich Low_complexity Low_complexity 1 37 0 1 923 233 222 19 0 chr4 44377592 44377646 -111252474 - L2c LINE L2 0 3387 3333 1 923 366 191 11 67 chr4 44378017 44378107 -111252013 - L1MB7 LINE L1 -7 6177 6093 1 923 388 193 207 16 chr4 44378108 44378229 -111251891 + RSINE1 SINE B4 3 146 -19 1 923 1437 62 0 40 chr4 44378256 44378456 -111251664 + B2_Mm2 SINE B2 2 193 -2 1 923 315 283 58 29 chr4 44378706 44378877 -111251243 - L1MB5 LINE L1 -81 6093 5918 1 923 876 265 80 69 chr4 44378890 44379066 -111251054 - MTD LTR MaLR -17 402 227 1 923 440 267 71 86 chr4 44379066 44379263 -111250857 - B3A SINE B2 -4 194 1 1 923 1260 79 84 0 chr4 44379270 44379448 -111250672 - B2_Mm2 SINE B2 -1 194 2 1 923 876 265 80 69 chr4 44379448 44379652 -111250468 - MTD LTR MaLR -196 223 10 1 923 256 202 75 10 chr4 44379665 44379765 -111250355 + B3A SINE B2 1 113 -103 1 923 248 267 105 0 chr4 44380445 44380531 -111249589 - L1M5 LINE L1 -551 5893 5799 1 923 201 147 0 0 chr4 44380575 44380609 -111249511 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 923 694 103 37 0 chr4 44380667 44380803 -111249317 + (TCTA)n Simple_repeat Simple_repeat 4 144 0 1 923 1806 42 0 0 chr4 44380831 44381047 -111249073 - L1Md_T LINE L1 0 6582 6367 1 923 307 289 84 32 chr4 44381048 44381202 -111248918 - L1M3 LINE L1 -1863 4277 4116 1 923 543 196 297 5 chr4 44381202 44381387 -111248733 + MTE2a LTR MaLR 1 239 -140 1 923 1145 62 14 0 chr4 44381513 44381658 -111248462 + B1_Mus1 SINE Alu 2 148 0 1 923 186 43 0 0 chr4 44381662 44381685 -111248435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 923 300 169 51 0 chr4 44381835 44381894 -111248226 - ID4_ SINE ID -19 64 3 1 923 245 128 21 0 chr4 44381905 44381952 -111248168 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 1 923 1177 188 5 9 chr4 44382173 44382383 -111247737 - B3 SINE B2 -6 210 2 1 923 1788 147 114 41 chr4 44382479 44382820 -111247300 + ORR1B2 LTR MaLR 1 366 -1 1 923 1319 78 20 25 chr4 44382870 44383066 -111247054 - B2_Mm2 SINE B2 0 195 1 1 923 246 284 118 59 chr4 44383234 44383522 -111246598 - L1MEg LINE L1 -4583 1501 1197 1 923 312 313 157 0 chr4 44383755 44383921 -111246199 - L1MEg LINE L1 -5047 1037 846 1 923 243 0 0 0 chr4 44383956 44383983 -111246137 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 923 3446 175 72 32 chr4 44383996 44384342 -111245778 - RMER1B Other Other -10 1056 717 1 923 2390 66 119 11 chr4 44384342 44384694 -111245426 + RLTR10 LTR ERVK 1 390 0 1 923 3446 168 55 21 chr4 44384694 44385049 -111245071 - RMER1B Other Other -350 716 8 1 923 942 139 221 0 chr4 44385102 44385274 -111244846 + B3 SINE B2 1 210 -6 1 923 254 0 83 0 chr4 44385346 44385382 -111244738 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 923 324 265 0 5 chr4 44385443 44385530 -111244590 - ID4 SINE ID -56 96 12 1 923 332 293 0 97 chr4 44385540 44385695 -111244425 - B1F1 SINE Alu -5 144 5 1 923 1144 74 0 0 chr4 44385817 44385965 -111244155 - B1_Mus1 SINE Alu 0 148 1 1 923 235 298 151 20 chr4 44386389 44386588 -111243532 + L1MC3 LINE L1 4159 4383 -1763 1 923 1473 58 16 5 chr4 44386632 44386821 -111243299 + B2_Mm2 SINE B2 1 191 -4 1 923 595 273 112 36 chr4 44386840 44387171 -111242949 + L1MC3 LINE L1 4507 4862 -1284 1 923 375 314 69 29 chr4 44387230 44387404 -111242716 - MLT1D LTR MaLR -73 432 252 1 923 377 263 36 36 chr4 44387643 44387781 -111242339 + L1MC3 LINE L1 6081 6218 -1567 1 923 231 114 0 0 chr4 44387960 44387995 -111242125 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1 923 522 211 25 164 chr4 44387995 44388154 -111241966 - B1F1 SINE Alu -12 137 1 1 923 606 205 16 16 chr4 44388031 44388155 -111241965 - ID_B1 SINE B4 -20 204 81 1 923 363 226 37 64 chr4 44388156 44388265 -111241855 + L1MC3 LINE L1 6719 6824 -961 1 923 212 207 113 79 chr4 44388690 44388805 -111241315 + MIRm SINE MIR 9 118 -90 1 923 360 83 280 0 chr4 44388880 44388979 -111241141 - B2_Mm2 SINE B2 -5 190 47 1 923 1312 80 29 0 chr4 44389008 44389183 -111240937 - B2_Mm2 SINE B2 -14 181 2 1 923 1199 97 51 6 chr4 44390879 44391036 -111239084 + B2_Mm2 SINE B2 2 158 -37 1 923 180 0 0 0 chr4 44391036 44391056 -111239064 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 923 1199 97 51 6 chr4 44391056 44391074 -111239046 + B2_Mm2 SINE B2 159 185 -10 1 923 862 190 104 16 chr4 44391074 44391256 -111238864 - B3 SINE B2 -5 211 14 1 923 648 282 179 47 chr4 44391378 44391635 -111238485 - B4A SINE B4 0 292 2 1 923 932 205 57 19 chr4 44391878 44392087 -111238033 - ID_B1 SINE B4 -6 218 2 1 923 1329 79 20 31 chr4 44392095 44392290 -111237830 - B2_Mm2 SINE B2 -2 193 1 1 923 202 317 17 0 chr4 44392484 44392544 -111237576 + MIR3 SINE MIR 98 158 -50 1 923 216 67 0 0 chr4 44393531 44393561 -111236559 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 1 923 284 348 59 22 chr4 44393801 44393936 -111236184 - MER5B DNA MER1_type 0 178 39 1 923 234 0 0 0 chr4 44394075 44394101 -111236019 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 923 421 178 14 0 chr4 44394105 44394178 -111235942 - B3 SINE B2 -92 124 51 1 923 256 217 0 0 chr4 44394165 44394211 -111235909 + PB1D9 SINE Alu 66 111 -9 1 923 830 219 48 16 chr4 44394244 44394430 -111235690 + B3A SINE B2 2 193 -5 1 923 697 283 40 0 chr4 44394456 44394629 -111235491 + B3A SINE B2 2 181 -17 1 923 21 0 0 0 chr4 44394659 44394680 -111235440 + AT_rich Low_complexity Low_complexity 1 21 0 1 923 1162 92 73 23 chr4 44394680 44394857 -111235263 - B2_Mm2 SINE B2 -9 186 1 1 923 1368 109 5 5 chr4 44394906 44395100 -111235020 + B2_Mm2 SINE B2 1 194 -1 1 923 1315 50 0 0 chr4 44395576 44395737 -111234383 + B2_Mm2 SINE B2 2 162 -33 1 923 353 0 0 60 chr4 44395737 44395787 -111234333 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 923 441 36 0 0 chr4 44396502 44396557 -111233563 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 923 28 0 0 0 chr4 44396717 44396745 -111233375 + AT_rich Low_complexity Low_complexity 1 28 0 1 923 272 278 64 122 chr4 44396861 44397033 -111233087 - MLT1L LTR MaLR -184 426 265 1 923 305 246 43 60 chr4 44397229 44397346 -111232774 + PB1D10 SINE Alu 2 116 -1 1 923 203 61 0 29 chr4 44397595 44397629 -111232491 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 923 475 274 91 7 chr4 44397718 44397872 -111232248 - B4 SINE B4 -125 167 1 1 923 23 0 0 0 chr4 44397880 44397903 -111232217 + AT_rich Low_complexity Low_complexity 1 23 0 1 923 180 179 0 0 chr4 44398063 44398102 -111232018 + CT-rich Low_complexity Low_complexity 2 40 0 1 923 789 274 99 70 chr4 44398154 44398496 -111231624 + ORR1E LTR MaLR 4 355 -4 1 923 3527 28 2 0 chr4 44398556 44398951 -111231169 + MTA_Mm LTR MaLR 1 396 0 1 923 304 214 157 0 chr4 44398962 44399051 -111231069 + L2b LINE L2 3269 3371 -4 1 923 239 196 143 0 chr4 44399493 44399549 -111230571 + MLT1K LTR MaLR 530 593 -2 1 923 186 324 15 0 chr4 44399711 44399779 -111230341 + MIRc SINE MIR 155 223 -45 1 923 244 303 60 8 chr4 44401048 44401181 -111228939 + MLT1L LTR MaLR 129 268 -342 1 923 880 159 28 0 chr4 44401239 44401384 -111228736 - B1_Mur4 SINE Alu -1 149 1 1 923 375 202 124 80 chr4 44401394 44401507 -111228613 - PB1D7 SINE Alu 0 120 3 1 923 612 241 305 23 chr4 44401733 44402035 -111228085 + MLT1B LTR MaLR 3 389 -1 1 923 288 325 136 7 chr4 44402103 44402258 -111227862 - MLT1J1 LTR MaLR -236 208 34 1 923 343 267 0 13 chr4 44402258 44402334 -111227786 + ID4_ SINE ID 1 75 -8 1 923 264 234 0 0 chr4 44402342 44402387 -111227733 + ID_B1 SINE B4 99 143 -81 1 923 765 290 36 9 chr4 44402387 44402610 -111227510 + B4A SINE B4 2 230 -62 1 923 2213 142 50 11 chr4 44402632 44402996 -111227124 + ORR1C1 LTR MaLR 1 378 0 1 923 226 300 33 0 chr4 44402996 44403054 -111227066 + ID_B1 SINE B4 164 223 -1 1 923 850 211 94 5 chr4 44403531 44403722 -111226398 - B3 SINE B2 -7 209 2 1 923 516 95 64 23 chr4 44404043 44404215 -111225905 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 923 679 66 71 12 chr4 44404226 44404394 -111225726 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 923 379 135 44 15 chr4 44404412 44404547 -111225573 + (TG)n Simple_repeat Simple_repeat 1 139 0 1 923 723 279 64 0 chr4 44404819 44405070 -111225050 - L1MB3 LINE L1 -286 5897 5631 1 923 231 61 0 0 chr4 44405072 44405105 -111225015 + (C)n Simple_repeat Simple_repeat 1 33 0 1 923 246 209 26 141 chr4 44406492 44406570 -111223550 + PB1D9 SINE Alu 45 113 -7 1 923 1164 114 0 0 chr4 44406570 44406746 -111223374 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 1 923 623 114 29 0 chr4 44406746 44406851 -111223269 + (GAAAA)n Simple_repeat Simple_repeat 2 109 0 1 923 397 335 83 55 chr4 44407005 44407348 -111222772 - ORR1E LTR MaLR -6 373 1 1 923 445 316 65 0 chr4 44407375 44407590 -111222530 - MER20B DNA MER1_type -39 744 516 1 923 245 38 73 36 chr4 44407862 44407917 -111222203 + (TCTCCC)n Simple_repeat Simple_repeat 1 57 0 1 923 360 272 45 11 chr4 44408151 44408289 -111221831 + B4 SINE B4 2 146 -146 1 923 396 0 0 0 chr4 44408380 44408424 -111221696 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 923 295 216 274 65 chr4 44408502 44408520 -111221600 + ID_B1 SINE B4 73 222 -2 1 923 420 302 47 0 chr4 44408520 44408626 -111221494 + PB1D10 SINE Alu 5 115 -2 1 923 247 217 50 0 chr4 44408685 44408745 -111221375 + ID2 SINE ID 4 66 -17 1 923 545 203 68 0 chr4 44408795 44408913 -111221207 + B4 SINE B4 102 227 -65 1 923 352 234 91 0 chr4 44408915 44409029 -111221091 + B1F2 SINE Alu 2 141 -8 1 923 627 127 0 0 chr4 44409089 44409207 -111220913 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 923 302 214 129 0 chr4 44409645 44409715 -111220405 - ID4 SINE ID -3 80 2 1 923 365 257 29 0 chr4 44409813 44409918 -111220202 - PB1D10 SINE Alu -9 108 1 1 923 430 209 45 45 chr4 44410060 44410170 -111219950 - PB1D10 SINE Alu 0 117 8 1 923 585 42 0 0 chr4 44410224 44410296 -111219824 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 923 638 257 101 0 chr4 44410304 44410452 -111219668 - RSINE1 SINE B4 0 165 3 1 923 724 144 7 108 chr4 44410481 44410629 -111219491 + B1_Mur3 SINE Alu 5 137 -12 1 923 1107 71 7 0 chr4 44410630 44410770 -111219350 + B1_Mm SINE Alu 1 141 -6 1 923 625 56 22 0 chr4 44410772 44410862 -111219258 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 923 966 257 158 47 chr4 44411144 44411764 -111218356 + Kanga2_a DNA Tc2 47 735 -153 1 923 527 331 24 48 chr4 44411922 44412090 -111218030 + RSINE1 SINE B4 2 165 0 1 923 220 146 55 0 chr4 44412091 44412146 -111217974 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1 923 1246 253 116 42 chr4 44412691 44413219 -111216901 - Charlie2b DNA MER1_type -16 2766 2200 1 923 606 283 48 115 chr4 44413256 44413568 -111216552 - B4A SINE B4 -1 291 1 1 923 339 302 19 19 chr4 44413581 44413689 -111216431 - PB1D7 SINE Alu -12 108 1 1 923 291 341 51 43 chr4 44413739 44413877 -111216243 - MER91C DNA Tip100 0 140 2 1 923 351 285 92 41 chr4 44414361 44414580 -111215540 - MIRb SINE MIR -19 249 23 1 923 33 0 0 0 chr4 44415551 44415584 -111214536 + AT_rich Low_complexity Low_complexity 1 33 0 1 923 307 284 58 41 chr4 44416165 44416286 -111213834 - MIRb SINE MIR -119 149 27 1 923 235 269 135 14 chr4 44416411 44416516 -111213604 + MIR3 SINE MIR 53 167 -41 1 923 226 271 60 86 chr4 44417437 44417554 -111212566 + MIRc SINE MIR 42 158 -110 1 923 2051 180 3 11 chr4 44417846 44418216 -111211904 - RMER1A Other Other -359 671 305 1 923 861 210 230 0 chr4 44418222 44418474 -111211646 - RMER1A Other Other -610 420 111 1 923 197 65 0 31 chr4 44418602 44418634 -111211486 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 923 1205 66 0 0 chr4 44418634 44418786 -111211334 - B2_Mm2 SINE B2 -33 162 11 1 923 459 0 0 0 chr4 44419107 44419158 -111210962 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 923 480 243 146 20 chr4 44419306 44419457 -111210663 + B3 SINE B2 1 170 -46 1 923 369 0 0 0 chr4 44419464 44419505 -111210615 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 923 552 106 0 0 chr4 44419505 44419598 -111210522 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 923 482 184 95 19 chr4 44419898 44420003 -111210117 - PB1D10 SINE Alu -4 113 1 1 923 1075 111 0 0 chr4 44420471 44420615 -111209505 + B1_Mur3 SINE Alu 2 145 -4 1 923 738 62 0 0 chr4 44420663 44420759 -111209361 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1 923 898 113 0 36 chr4 44421313 44421451 -111208669 - B1_Mur4 SINE Alu -3 147 15 1 923 216 0 0 0 chr4 44421453 44421477 -111208643 + (TTAAA)n Simple_repeat Simple_repeat 5 28 0 1 923 248 182 99 70 chr4 44421501 44421572 -111208548 + B4 SINE B4 83 155 -137 1 923 216 254 0 0 chr4 44421581 44421640 -111208480 + GA-rich Low_complexity Low_complexity 3 61 0 1 923 774 207 0 0 chr4 44421675 44421854 -111208266 + GA-rich Low_complexity Low_complexity 1 179 0 1 923 731 277 93 4 chr4 44421857 44422082 -111208038 + B4A SINE B4 4 248 -44 1 923 1012 43 3 48 chr4 44422142 44422438 -111207682 + (CA)n Simple_repeat Simple_repeat 1 282 0 1 923 1046 321 142 15 chr4 44422450 44423036 -111207084 - Zaphod DNA Tip100 -3175 856 197 1 923 366 231 169 44 chr4 44423188 44423324 -111206796 - B4 SINE B4 -138 154 2 1 923 1772 199 231 19 chr4 44423432 44424253 -111205867 - RMER1A Other Other 0 1066 15 1 923 1899 250 158 62 chr4 44424289 44425057 -111205063 - RMER17B LTR ERVK -117 841 1 1 923 25 51 0 0 chr4 44425470 44425509 -111204611 + AT_rich Low_complexity Low_complexity 1 39 0 1 923 1309 89 33 6 chr4 44425515 44425675 -111204445 + B2_Mm2 SINE B2 2 161 -34 1 923 411 21 0 0 chr4 44425675 44425723 -111204397 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1 923 1309 89 33 6 chr4 44425723 44425743 -111204377 + B2_Mm2 SINE B2 162 187 -8 1 923 342 185 0 0 chr4 44426195 44426249 -111203871 - ORR1B1 LTR MaLR 0 367 314 1 923 1343 92 16 16 chr4 44426252 44426440 -111203680 - B2_Mm2 SINE B2 -6 189 2 1 923 643 195 96 48 chr4 44426454 44426621 -111203499 - B2_Mm2 SINE B2 -20 175 1 1 923 1801 146 33 13 chr4 44426621 44426926 -111203194 - ORR1B1 LTR MaLR -42 352 42 1 923 1608 233 96 8 chr4 44427004 44427389 -111202731 - MTD LTR MaLR 0 419 1 1 923 297 289 69 51 chr4 44427680 44427916 -111202204 + MLT1D LTR MaLR 219 504 -1 1 923 287 380 8 0 chr4 44427971 44428092 -111202028 + MIR3 SINE MIR 37 158 -50 1 923 239 247 65 43 chr4 44428152 44428245 -111201875 - PB1D10 SINE Alu -1 116 22 1 923 803 234 94 0 chr4 44428369 44428561 -111201559 - B3 SINE B2 -6 210 1 1 923 347 319 0 0 chr4 44429085 44429176 -111200944 + ORR1E LTR MaLR 27 117 -242 1 923 352 274 29 10 chr4 44429462 44429565 -111200555 - MLT1A1 LTR MaLR -4 404 300 1 923 783 169 0 69 chr4 44429738 44429897 -111200223 - B1_Mur4 SINE Alu -2 148 1 1 923 1049 129 0 0 chr4 44430184 44430323 -111199797 - B1_Mus1 SINE Alu -9 139 1 1 923 672 77 0 0 chr4 44430358 44430449 -111199671 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 1 923 335 331 155 48 chr4 44430720 44431165 -111198955 - MLT1D LTR MaLR -38 467 5 1 923 543 176 16 8 chr4 44431788 44431914 -111198206 + CT-rich Low_complexity Low_complexity 3 129 0 1 923 812 109 59 0 chr4 44431926 44432045 -111198075 - B1_Mus1 SINE Alu -21 127 2 1 923 366 268 64 92 chr4 44432045 44432134 -111197986 - B4 SINE B4 -63 209 18 1 923 233 280 83 25 chr4 44432431 44432552 -111197568 - MIR SINE MIR -131 131 4 1 115 3784 211 64 5 chr4 44433285 44434070 -111196050 + RCHARR1 DNA MER1_type 144 974 0 1 924 373 368 130 27 chr4 44434236 44434535 -111195585 - MamGypLTR2b LTR Gypsy -595 473 10 1 924 582 229 164 62 chr4 44434685 44434862 -111195258 + B3A SINE B2 3 197 -1 1 924 432 189 48 78 chr4 44435311 44435414 -111194706 - PB1D9 SINE Alu -1 119 20 1 924 267 241 10 164 chr4 44435337 44435441 -111194679 - MT2B LTR ERVL -356 245 158 1 924 653 278 138 19 chr4 44435585 44435897 -111194223 + ORR1E LTR MaLR 7 355 -4 1 924 347 329 85 85 chr4 44436162 44436491 -111193629 - L1ME4a LINE L1 -54 6070 5742 1 924 405 0 0 0 chr4 44436503 44436548 -111193572 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 924 1390 68 17 6 chr4 44436549 44436727 -111193393 - B2_Mm2 SINE B2 -14 181 2 1 924 234 0 0 0 chr4 44437299 44437325 -111192795 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 924 483 33 0 0 chr4 44437695 44437756 -111192364 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 924 21 36 0 0 chr4 44438791 44438819 -111191301 + AT_rich Low_complexity Low_complexity 1 28 0 1 924 306 0 0 0 chr4 44439664 44439698 -111190422 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 924 447 101 0 0 chr4 44439699 44439778 -111190342 + (CAGAGA)n Simple_repeat Simple_repeat 2 80 0 1 924 351 65 0 0 chr4 44439797 44439843 -111190277 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 1 924 299 272 36 22 chr4 44439917 44440056 -111190064 + CT-rich Low_complexity Low_complexity 3 143 0 1 924 1132 105 87 0 chr4 44440220 44440392 -111189728 + B2_Mm2 SINE B2 1 187 -8 1 924 221 171 0 0 chr4 44440524 44440559 -111189561 + MIRc SINE MIR 120 154 -114 1 924 191 213 21 21 chr4 44440995 44441043 -111189077 + L2c LINE L2 3330 3377 -10 1 924 351 0 0 0 chr4 44441057 44441096 -111189024 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 924 205 320 39 26 chr4 44442389 44442466 -111187654 - L2b LINE L2 -10 3365 3288 1 924 525 71 0 0 chr4 44442621 44442691 -111187429 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 924 218 289 43 96 chr4 44442764 44442879 -111187241 - L2b LINE L2 -1 3374 3266 1 924 366 248 0 0 chr4 44443032 44443157 -111186963 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 924 237 324 0 0 chr4 44443158 44443226 -111186894 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 1 924 959 269 76 22 chr4 44443379 44443656 -111186464 - B4 SINE B4 0 292 1 1 924 1029 128 0 0 chr4 44444152 44444300 -111185820 - B1_Mus1 SINE Alu 0 148 1 1 924 259 306 42 0 chr4 44444650 44444722 -111185398 + MIR SINE MIR 71 145 -117 1 924 184 135 53 13 chr4 44445336 44445411 -111184709 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 924 273 237 80 88 chr4 44446727 44446852 -111183268 + MLT1K LTR MaLR 197 320 -275 1 924 402 21 0 0 chr4 44447001 44447048 -111183072 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 924 720 310 31 42 chr4 44447077 44447269 -111182851 - B4A SINE B4 -3 289 100 1 924 468 0 0 0 chr4 44447420 44447472 -111182648 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 924 333 0 0 0 chr4 44447472 44447508 -111182612 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 924 387 0 0 0 chr4 44448141 44448184 -111181936 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 924 194 294 0 0 chr4 44448364 44448415 -111181705 - MIRc SINE MIR -103 165 115 1 924 1227 235 117 67 chr4 44448822 44449421 -111180699 + RMER20B LTR ERVK 7 609 -18 1 924 225 132 26 0 chr4 44449418 44449456 -111180664 + LTR89 LTR ERVL? 579 617 -262 1 924 600 53 0 0 chr4 44450183 44450259 -111179861 + (TCTCC)n Simple_repeat Simple_repeat 5 80 0 1 924 1341 86 21 0 chr4 44450266 44450453 -111179667 - B2_Mm1a SINE B2 -1 192 2 1 924 263 194 48 0 chr4 44450845 44450907 -111179213 + L1MC1 LINE L1 6261 6325 -8 1 924 327 167 35 12 chr4 44451393 44451478 -111178642 + C-rich Low_complexity Low_complexity 4 90 0 1 924 333 245 73 73 chr4 44451584 44451694 -111178426 + MER81 DNA AcHobo 1 110 -4 1 924 898 305 25 42 chr4 44452125 44452409 -111177711 + B4A SINE B4 5 283 -9 1 924 23 54 0 0 chr4 44453540 44453577 -111176543 + AT_rich Low_complexity Low_complexity 1 37 0 1 924 800 169 63 49 chr4 44453605 44453748 -111176372 - B1_Mur4 SINE Alu -5 145 1 1 924 657 58 0 0 chr4 44453901 44453987 -111176133 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 924 185 349 15 60 chr4 44454001 44454068 -111176052 - MIRc SINE MIR -182 86 23 1 924 1253 191 5 0 chr4 44454069 44454284 -111175836 + B3 SINE B2 1 216 0 1 924 737 160 96 0 chr4 44454815 44454940 -111175180 + B1_Mur1 SINE Alu 2 138 -11 1 924 996 287 46 21 chr4 44455060 44455341 -111174779 + B4A SINE B4 1 288 -4 1 924 352 274 53 23 chr4 44455523 44455654 -111174466 - MER53 DNA hAT -58 135 1 1 924 345 264 94 38 chr4 44455835 44456174 -111173946 - Lx7 LINE L1 -33 7663 7306 1 924 240 275 23 81 chr4 44456422 44456509 -111173611 + MLT1A1 LTR MaLR 17 98 -276 1 924 282 305 10 21 chr4 44456839 44456936 -111173184 + MLT1A1 LTR MaLR 302 397 -11 1 924 286 189 203 0 chr4 44456956 44457030 -111173090 + MLT1A0 LTR MaLR 146 234 -131 1 924 180 0 0 0 chr4 44457618 44457638 -111172482 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 924 204 91 0 0 chr4 44457646 44457666 -111172454 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 924 224 0 0 61 chr4 44457666 44457699 -111172421 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 1 924 204 91 0 0 chr4 44457699 44457711 -111172409 + (CA)n Simple_repeat Simple_repeat 2 13 0 1 924 345 239 122 52 chr4 44457930 44458045 -111172075 - ID_B1 SINE B4 -4 220 98 1 924 259 286 16 104 chr4 44459199 44459324 -111170796 + MIRb SINE MIR 60 173 -95 1 924 781 215 161 0 chr4 44460761 44460910 -111169210 + B3 SINE B2 1 149 -67 1 924 654 25 0 0 chr4 44460910 44460990 -111169130 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 924 781 215 161 0 chr4 44460990 44461026 -111169094 + B3 SINE B2 150 215 -1 1 924 228 236 28 131 chr4 44461203 44461310 -111168810 + L2a LINE L2 3292 3426 0 1 924 229 291 32 64 chr4 44462229 44462354 -111167766 - L2c LINE L2 -228 3159 3039 1 924 445 275 55 0 chr4 44464599 44464708 -111165412 + MIR SINE MIR 25 139 -123 1 924 354 23 0 0 chr4 44464716 44464759 -111165361 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 924 679 264 74 171 chr4 44465997 44466417 -111163703 - MTEa LTR MaLR 0 379 1 1 924 210 71 0 0 chr4 44467744 44467772 -111162348 + (TCC)n Simple_repeat Simple_repeat 3 30 0 1 924 248 304 87 26 chr4 44468103 44468218 -111161902 - MIR SINE MIR -128 134 13 1 924 1386 199 36 120 chr4 44468484 44468825 -111161295 + ORR1C2 LTR MaLR 66 384 0 1 924 293 269 0 133 chr4 44468829 44468919 -111161201 - ID_B1 SINE B4 -63 161 84 1 924 471 199 21 113 chr4 44469462 44469485 -111160635 + MT2B LTR ERVL 150 159 -442 1 924 1134 75 0 7 chr4 44469485 44469632 -111160488 + B1_Mus2 SINE Alu 2 147 0 1 924 414 0 0 0 chr4 44470006 44470052 -111160068 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 924 258 32 0 0 chr4 44470122 44470153 -111159967 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 924 2952 146 98 103 chr4 44470976 44471589 -111158531 - RMER19C LTR ERVK -1 610 1 1 924 255 344 77 77 chr4 44471643 44471838 -111158282 - L2 LINE L2 -434 2985 2791 1 924 1902 227 19 54 chr4 44472207 44472687 -111157433 + RMER20A LTR ERVK 16 478 -38 1 924 2524 180 71 32 chr4 44472703 44473061 -111157059 - RLTR31A_Mm LTR ERVK 0 584 206 1 924 2240 135 17 127 chr4 44473061 44473595 -111156525 + IAPLTR2_Mm LTR ERVK 1 475 0 1 924 2524 180 71 32 chr4 44473595 44473798 -111156322 - RLTR31A_Mm LTR ERVK -379 205 1 1 924 231 339 60 82 chr4 44474038 44474221 -111155899 + ORR1E LTR MaLR 153 331 -28 1 924 260 162 70 42 chr4 44474234 44474305 -111155815 + MYSERV6-int LTR ERVK 8710 8782 -177 1 924 293 205 10 102 chr4 44474362 44474460 -111155660 + RLTR19-int LTR ERVK 3484 3572 -2565 1 924 878 247 149 10 chr4 44474629 44474931 -111155189 + RMER17C-int LTR ERVK 2608 2951 -287 1 924 1409 217 86 46 chr4 44475155 44475527 -111154593 + RMER10B LTR ERVL 1 387 -11 1 924 23 54 0 0 chr4 44475617 44475654 -111154466 + AT_rich Low_complexity Low_complexity 1 37 0 1 924 247 352 36 71 chr4 44475872 44475890 -111154230 - B2_Mm2 SINE B2 -4 191 177 1 924 1284 82 27 32 chr4 44475890 44476078 -111154042 - B2_Mm2 SINE B2 -8 187 1 1 924 549 290 42 72 chr4 44476088 44476255 -111153865 - RSINE1 SINE B4 0 165 4 1 924 235 278 14 14 chr4 44476488 44476561 -111153559 + CT-rich Low_complexity Low_complexity 3 75 0 1 924 659 255 136 12 chr4 44476683 44476925 -111153195 + B4 SINE B4 3 274 -18 1 924 2405 87 15 56 chr4 44477270 44477611 -111152509 + ORR1A2 LTR MaLR 1 327 0 1 924 1160 88 0 0 chr4 44478045 44478193 -111151927 - B1_Mus1 SINE Alu 0 148 1 1 924 1455 151 58 214 chr4 44478353 44478765 -111151355 - ORR1B1 LTR MaLR -6 388 41 1 924 269 255 7 27 chr4 44478971 44479120 -111151000 + CT-rich Low_complexity Low_complexity 3 148 0 1 924 324 254 93 23 chr4 44479168 44479297 -111150823 + MIRc SINE MIR 2 139 -129 1 924 312 27 0 0 chr4 44479393 44479430 -111150690 + (TTG)n Simple_repeat Simple_repeat 1 37 0 1 924 495 33 0 0 chr4 44479445 44479506 -111150614 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 924 602 234 24 8 chr4 44479506 44479631 -111150489 - RSINE1 SINE B4 -26 139 13 1 924 273 264 168 9 chr4 44479630 44479737 -111150383 - MLT1C LTR MaLR -55 412 289 1 924 702 269 116 68 chr4 44479931 44480305 -111149815 - RMER13A LTR ERVK -8 619 186 1 924 306 0 0 0 chr4 44480688 44480722 -111149398 + (A)n Simple_repeat Simple_repeat 1 34 0 1 924 524 344 188 20 chr4 44480820 44481176 -111148944 - MLT1K LTR MaLR -160 435 20 1 924 285 269 244 6 chr4 44481482 44481541 -111148579 - MER112 DNA MER1_type 0 261 198 1 924 441 0 0 0 chr4 44481541 44481590 -111148530 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 924 285 269 244 6 chr4 44481590 44481706 -111148414 - MER112 DNA MER1_type -64 197 45 1 924 219 259 19 0 chr4 44481713 44481767 -111148353 + L3 LINE CR1 4428 4482 -7 1 924 727 293 65 84 chr4 44483038 44483406 -111146714 - ORR1E LTR MaLR 0 379 2 1 924 1028 176 16 11 chr4 44483479 44483668 -111146452 + B3A SINE B2 1 190 -8 1 924 21 0 0 0 chr4 44483668 44483689 -111146431 + AT_rich Low_complexity Low_complexity 1 21 0 1 924 2175 94 9 2 chr4 44483700 44484032 -111146088 + ORR1A2 LTR MaLR 6 346 0 1 924 322 258 0 0 chr4 44484447 44484509 -111145611 + ID4 SINE ID 15 76 -7 1 924 230 246 14 14 chr4 44485568 44485638 -111144482 + MamRep1161 DNA Tigger 228 297 -660 1 924 192 77 0 0 chr4 44485670 44485696 -111144424 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1 924 192 77 0 0 chr4 44485697 44485723 -111144397 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 924 687 272 103 15 chr4 44485909 44486170 -111143950 - B4A SINE B4 -8 284 1 1 924 34688 58 6 20 chr4 44486259 44491418 -111138702 + L1Md_F3 LINE L1 515 5586 -297 1 924 8040 43 19 0 chr4 44491418 44492397 -111137723 + L1Md_F3 LINE L1 5587 6584 0 1 924 272 335 118 35 chr4 44492710 44492880 -111137240 + MamRep1161 DNA TcMar 680 863 -94 1 924 499 236 63 63 chr4 44494729 44494887 -111135233 + MTEa LTR MaLR 18 175 -204 1 924 473 343 123 64 chr4 44494887 44495150 -111134970 + MT2A LTR ERVL 18 463 -70 1 924 214 250 0 0 chr4 44495150 44495194 -111134926 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 924 193 293 115 48 chr4 44495649 44495753 -111134367 + L3 LINE CR1 2912 3022 -1467 1 924 914 325 127 17 chr4 44496287 44496641 -111133479 - MLT1I LTR MaLR -1 410 18 1 924 213 258 0 0 chr4 44497121 44497183 -111132937 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 924 405 0 0 0 chr4 44497183 44497228 -111132892 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 924 370 326 84 15 chr4 44498156 44498287 -111131833 - B4 SINE B4 -68 224 85 1 924 282 116 0 0 chr4 44498287 44498330 -111131790 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1 924 570 67 0 0 chr4 44498334 44498409 -111131711 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 924 807 219 81 16 chr4 44498411 44498597 -111131523 - B3 SINE B2 -17 199 2 1 924 359 222 56 0 chr4 44498600 44498690 -111131430 - B4 SINE B4 -196 96 2 1 924 346 209 111 81 chr4 44498695 44498794 -111131326 - PB1D10 SINE Alu -18 102 1 1 924 301 250 14 14 chr4 44498736 44498805 -111131315 - B4A SINE B4 -150 142 74 1 924 571 309 76 13 chr4 44499598 44499834 -111130286 - MamRep434 DNA TcMar -168 258 8 1 924 225 312 26 60 chr4 44500264 44500380 -111129740 - MLT1A1 LTR MaLR 0 408 297 1 924 207 265 0 0 chr4 44501521 44501570 -111128550 + CT-rich Low_complexity Low_complexity 4 52 0 2 924 324 226 0 0 chr4 44501949 44502042 -111128078 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 924 354 61 0 0 chr4 44502276 44502325 -111127795 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 924 213 39 0 0 chr4 44502459 44502485 -111127635 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 924 648 244 0 0 chr4 44502507 44502634 -111127486 - RSINE1 SINE B4 -36 129 3 6 924 356 246 0 0 chr4 44502758 44502827 -111127293 - ID4 SINE ID 0 83 15 7 924 308 281 22 11 chr4 44502859 44502949 -111127171 - B1F SINE Alu -1 148 58 8 924 468 0 0 0 chr4 44502972 44503024 -111127096 + (TTG)n Simple_repeat Simple_repeat 2 53 0 9 924 683 199 45 8 chr4 44503024 44503156 -111126964 - B1_Mus2 SINE Alu -10 137 1 1 924 854 141 0 6 chr4 44505205 44505362 -111124758 + (TTCC)n Simple_repeat Simple_repeat 4 159 0 1 924 669 213 14 14 chr4 44505389 44505532 -111124588 - B1_Mur1 SINE Alu -6 143 1 1 924 499 236 89 8 chr4 44505643 44505767 -111124353 - RSINE1 SINE B4 -29 136 3 1 924 822 223 36 80 chr4 44506307 44506531 -111123589 + ID_B1 SINE B4 11 224 0 1 924 300 336 27 47 chr4 44507452 44507602 -111122518 + B1F SINE Alu 3 149 0 1 924 216 0 0 0 chr4 44507914 44507938 -111122182 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 924 635 295 31 5 chr4 44507945 44508136 -111121984 - B4A SINE B4 -11 281 86 1 924 1245 209 19 156 chr4 44508398 44508777 -111121343 + ORR1D1 LTR MaLR 34 360 -14 1 924 500 320 62 11 chr4 44508807 44508984 -111121136 - MER5A DNA MER1_type -3 186 1 1 924 243 320 13 0 chr4 44509129 44509207 -111120913 + L2b LINE L2 3294 3372 -3 2 924 234 128 0 0 chr4 44509558 44509597 -111120523 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 2 924 261 0 0 0 chr4 44510335 44510364 -111119756 + (A)n Simple_repeat Simple_repeat 1 29 0 2 924 188 315 180 0 chr4 44510793 44510882 -111119238 + MIRc SINE MIR 83 187 -81 2 924 1007 319 101 24 chr4 44511367 44511951 -111118169 - L1ME2 LINE L1 -219 5945 5317 2 924 249 328 0 0 chr4 44511956 44512020 -111118100 - ID_B1 SINE B4 -130 94 31 2 924 1145 149 55 138 chr4 44512012 44512170 -111117950 + ORR1C2 LTR MaLR 115 247 -137 2 924 990 47 0 0 chr4 44512170 44512298 -111117822 + (CCTG)n Simple_repeat Simple_repeat 1 128 0 2 924 1145 149 55 138 chr4 44512298 44512428 -111117692 + ORR1C2 LTR MaLR 248 378 -6 2 924 608 324 120 18 chr4 44512455 44512932 -111117188 - L1ME2 LINE L1 -956 5190 4660 2 924 639 236 7 0 chr4 44512932 44513072 -111117048 - B1_Mur1 SINE Alu -5 144 4 2 924 608 324 126 28 chr4 44513072 44513317 -111116803 - L1ME2 LINE L1 -1480 4666 4401 2 924 2530 208 156 21 chr4 44513329 44513434 -111116686 - RMER1B Other Other -9 1057 920 2 924 306 0 0 0 chr4 44513434 44513468 -111116652 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 924 2530 214 143 28 chr4 44513468 44514131 -111115989 - RMER1B Other Other -147 919 85 2 924 331 318 67 48 chr4 44514132 44514400 -111115720 - L1ME2 LINE L1 -1732 4414 4142 2 924 212 149 21 0 chr4 44514490 44514537 -111115583 + CT-rich Low_complexity Low_complexity 4 51 0 3 924 500 304 46 12 chr4 44514819 44514992 -111115128 + MLT1I LTR MaLR 233 411 0 3 924 1066 265 70 0 chr4 44516055 44516312 -111113808 + B4A SINE B4 10 284 -8 3 924 210 37 0 0 chr4 44516317 44516344 -111113776 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 924 670 306 24 10 chr4 44517030 44517238 -111112882 + B4A SINE B4 1 211 -81 3 924 352 317 28 60 chr4 44517536 44517751 -111112369 - MLT1K LTR MaLR 0 595 388 3 924 663 127 118 8 chr4 44517785 44517912 -111112208 + B1_Mur3 SINE Alu 9 149 0 3 924 205 158 53 0 chr4 44517938 44517976 -111112144 + GA-rich Low_complexity Low_complexity 2 41 0 3 924 666 102 0 0 chr4 44519387 44519505 -111110615 + (TC)n Simple_repeat Simple_repeat 1 118 0 3 924 279 0 0 0 chr4 44519505 44519536 -111110584 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 924 1139 181 10 5 chr4 44519847 44520052 -111110068 - B3 SINE B2 -4 212 7 4 924 368 274 28 0 chr4 44520347 44520453 -111109667 + PB1D10 SINE Alu 1 109 -8 4 924 702 41 0 30 chr4 44520462 44520562 -111109558 + B1_Mm SINE Alu 51 147 0 4 924 182 118 29 0 chr4 44520563 44520597 -111109523 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 924 268 310 13 19 chr4 44521237 44521395 -111108725 + CT-rich Low_complexity Low_complexity 2 158 0 4 924 202 331 0 120 chr4 44522405 44522580 -111107540 + L2c LINE L2 3012 3165 -222 4 924 295 304 162 52 chr4 44523132 44523323 -111106797 - LTR33 LTR ERVL -303 212 1 4 924 836 180 11 55 chr4 44524471 44524653 -111105467 + MamRep564 Unknown Unknown 60 233 -124 4 924 806 234 5 34 chr4 44524883 44525087 -111105033 + B3A SINE B2 1 198 0 4 924 614 281 209 11 chr4 44525617 44525894 -111104226 + ORR1D1 LTR MaLR 1 332 -42 5 924 1211 233 97 15 chr4 44525891 44526222 -111103898 - MTEa LTR MaLR -20 359 2 5 924 301 288 0 0 chr4 44526803 44526869 -111103251 + MLT1J LTR MaLR 73 138 -306 5 924 492 266 80 42 chr4 44526948 44527160 -111102960 + MLT1J LTR MaLR 292 511 -1 5 924 631 297 27 0 chr4 44527500 44527648 -111102472 - RSINE1 SINE B4 0 165 14 5 924 645 262 58 11 chr4 44527680 44527869 -111102251 - B3A SINE B2 0 198 1 5 924 390 336 0 25 chr4 44527911 44528033 -111102087 - RSINE1 SINE B4 -2 163 45 5 924 391 241 11 11 chr4 44528116 44528204 -111101916 - RSINE1 SINE B4 -74 91 4 5 924 219 261 61 61 chr4 44528634 44528732 -111101388 + L2b LINE L2 3272 3369 -6 5 924 234 215 108 0 chr4 44529219 44529284 -111100836 + MIRb SINE MIR 136 207 -61 5 924 4173 148 12 4 chr4 44529410 44530094 -111100026 - RLTR17 LTR ERVK 0 692 4 5 924 458 304 50 60 chr4 44530308 44530688 -111099432 - MLT1E LTR MaLR -58 595 164 6 924 226 329 38 12 chr4 44531450 44531530 -111098590 + MLT1J2 LTR MaLR 259 340 -108 6 924 292 224 12 50 chr4 44532421 44532501 -111097619 + PB1D10 SINE Alu 41 117 0 6 924 682 263 164 19 chr4 44533122 44533461 -111096659 + MLT1B LTR MaLR 6 389 -1 6 924 276 53 0 0 chr4 44533653 44533691 -111096429 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 6 924 321 328 16 16 chr4 44534100 44534221 -111095899 + L2c LINE L2 3040 3160 -227 6 924 447 73 0 0 chr4 44534228 44534296 -111095824 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 924 372 147 0 0 chr4 44534295 44534370 -111095750 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 924 680 182 0 6 chr4 44534402 44534579 -111095541 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 924 373 328 8 8 chr4 44534580 44534700 -111095420 - B4A SINE B4 -171 121 2 6 924 376 304 123 100 chr4 44535115 44535455 -111094665 - ORR1E LTR MaLR -10 349 2 6 924 188 146 73 0 chr4 44536296 44536337 -111093783 + L2b LINE L2 3332 3375 0 7 924 4939 167 29 19 chr4 44536421 44537312 -111092808 + Lx5 LINE L1 6146 7045 -5 7 924 234 128 0 0 chr4 44537360 44537399 -111092721 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 924 24 0 0 0 chr4 44537860 44537884 -111092236 + AT_rich Low_complexity Low_complexity 1 24 0 7 924 424 235 0 5 chr4 44538740 44539145 -111090975 + (TG)n Simple_repeat Simple_repeat 1 402 0 7 924 198 0 0 0 chr4 44540998 44541020 -111089100 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 7 924 252 321 107 0 chr4 44544650 44544762 -111085358 + MER58A DNA MER1_type 75 198 -26 7 924 298 311 85 0 chr4 44545221 44545327 -111084793 + PB1D10 SINE Alu 3 117 0 7 924 292 354 39 8 chr4 44547506 44547634 -111082486 + MLT1N2 LTR MaLR 113 244 -318 7 924 253 197 61 0 chr4 44547835 44547901 -111082219 + MLT1N2 LTR MaLR 475 544 -18 7 924 187 290 213 21 chr4 44548131 44548272 -111081848 + MIR SINE MIR 82 249 -13 8 924 200 167 0 0 chr4 44548461 44548491 -111081629 + C-rich Low_complexity Low_complexity 2 31 0 8 924 309 26 0 0 chr4 44549732 44549770 -111080350 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 924 306 198 286 0 chr4 44549926 44550017 -111080103 - MER117 DNA MER1_type -47 150 34 8 924 389 20 20 0 chr4 44551454 44551504 -111078616 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 924 384 86 28 14 chr4 44551682 44551753 -111078367 + (TCC)n Simple_repeat Simple_repeat 3 74 0 8 924 334 285 101 75 chr4 44552254 44552514 -111077606 + L2a LINE L2 3137 3426 0 8 924 252 86 0 0 chr4 44552516 44552551 -111077569 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 8 924 422 327 30 24 chr4 44553071 44553240 -111076880 + MIR SINE MIR 34 203 -59 8 924 586 152 241 0 chr4 44553513 44553658 -111076462 - URR1A DNA MER1_type 0 226 47 8 924 289 210 43 3 chr4 44554711 44554790 -111075330 + MIRc SINE MIR 82 161 -101 9 924 905 117 20 33 chr4 44554863 44555013 -111075107 + B1_Mur3 SINE Alu 1 148 -1 9 924 239 152 30 15 chr4 44555014 44555081 -111075039 + A-rich Low_complexity Low_complexity 3 70 0 9 924 364 317 96 73 chr4 44555104 44555407 -111074713 + MLT1A LTR MaLR 65 374 0 9 924 587 210 4 0 chr4 44555719 44555970 -111074150 + (TG)n Simple_repeat Simple_repeat 1 252 0 9 924 198 71 0 0 chr4 44555972 44556000 -111074120 + (CATG)n Simple_repeat Simple_repeat 1 28 0 9 924 225 273 0 0 chr4 44556011 44556066 -111074054 + (TATG)n Simple_repeat Simple_repeat 4 58 0 9 924 347 246 0 8 chr4 44556091 44556218 -111073902 + (TG)n Simple_repeat Simple_repeat 1 126 0 9 924 437 263 0 33 chr4 44556513 44556635 -111073485 + MLT1A1 LTR MaLR 291 408 0 9 924 594 259 44 69 chr4 44557049 44557252 -111072868 + B3A SINE B2 1 198 0 9 924 968 148 0 13 chr4 44557286 44557437 -111072683 + B1_Mur4 SINE Alu 1 149 -1 1 924 183 139 0 0 chr4 44557437 44557473 -111072647 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 1 924 447 299 72 62 chr4 44557692 44557984 -111072136 - L1ME2z LINE L1 -123 6321 6027 1 924 296 248 29 117 chr4 44558141 44558278 -111071842 + PB1 SINE Alu 1 125 -2 1 924 243 0 0 0 chr4 44558348 44558375 -111071745 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 1 924 294 318 15 8 chr4 44559063 44559196 -111070924 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 924 234 0 0 0 chr4 44559240 44559266 -111070854 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1 924 192 350 128 10 chr4 44560378 44560574 -111069546 + L2c LINE L2 2937 3155 -232 1 924 246 339 81 74 chr4 44560891 44561162 -111068958 - ORR1E LTR MaLR -20 339 67 1 924 1875 239 85 25 chr4 44562577 44563131 -111066989 + Lx8 LINE L1 6887 7473 0 1 924 983 133 0 14 chr4 44563154 44563299 -111066821 + B1_Mur4 SINE Alu 2 144 -6 1 924 3401 40 0 2 chr4 44563681 44564077 -111066043 - MTA_Mm LTR MaLR -1 395 1 1 925 260 261 0 42 chr4 44564550 44564622 -111065498 - L2c LINE L2 -59 3328 3260 1 925 597 144 0 0 chr4 44565127 44565224 -111064896 + PB1D9 SINE Alu 22 118 -2 1 925 5763 48 0 0 chr4 44565241 44565969 -111064151 + L1Md_F3 LINE L1 4859 5586 -297 1 925 8263 37 5 8 chr4 44565969 44566970 -111063150 + L1Md_F3 LINE L1 5587 6584 0 1 925 181 264 19 0 chr4 44567499 44567552 -111062568 + MIR SINE MIR 98 151 -57 1 925 1331 52 0 0 chr4 44567619 44567791 -111062329 + B2_Mm2 SINE B2 2 173 -22 1 925 531 69 0 0 chr4 44567841 44567913 -111062207 + (TATG)n Simple_repeat Simple_repeat 2 73 0 1 925 530 234 31 0 chr4 44567915 44568043 -111062077 - RSINE1 SINE B4 -29 136 5 1 925 191 381 58 48 chr4 44568347 44568639 -111061481 - L2a LINE L2 -55 3371 3077 1 925 238 242 69 108 chr4 44568683 44568702 -111061418 + MT2B LTR ERVL 142 156 -445 1 925 441 204 19 10 chr4 44568702 44568824 -111061296 + B1_Mur1 SINE Alu 1 120 -29 1 925 1455 110 16 10 chr4 44568825 44569099 -111061021 - ORR1B2 LTR MaLR 0 367 46 1 925 351 0 0 0 chr4 44569506 44569545 -111060575 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 925 612 209 70 0 chr4 44570089 44570218 -111059902 + B3 SINE B2 2 139 -77 1 925 262 244 0 3 chr4 44570514 44570581 -111059539 + PB1 SINE Alu 46 120 -7 1 925 303 28 0 0 chr4 44571937 44571973 -111058147 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 1 925 189 0 0 0 chr4 44572703 44572724 -111057396 + (CCCCCA)n Simple_repeat Simple_repeat 5 25 0 1 925 180 0 0 0 chr4 44573189 44573209 -111056911 + (T)n Simple_repeat Simple_repeat 1 20 0 1 925 248 297 76 11 chr4 44573504 44573596 -111056524 + MIRb SINE MIR 80 177 -91 1 925 1048 295 81 17 chr4 44575833 44576240 -111053880 - ORSL-2b DNA Tip100 -46 462 30 1 925 216 67 0 0 chr4 44577041 44577071 -111053049 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 1 925 1023 200 80 51 chr4 44577088 44577362 -111052758 - B4 SINE B4 -5 287 6 1 925 273 312 56 12 chr4 44577364 44577526 -111052594 + L2c LINE L2 3215 3383 -4 1 925 887 280 45 21 chr4 44578232 44578520 -111051600 + MLT1D LTR MaLR 211 505 0 1 925 304 357 71 6 chr4 44580108 44580291 -111049829 + MLT1D LTR MaLR 311 505 0 1 925 945 253 57 4 chr4 44581741 44582003 -111048117 - MER115 DNA Tip100 0 693 418 1 925 477 71 0 0 chr4 44582012 44582082 -111048038 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 925 423 0 0 0 chr4 44582084 44582131 -111047989 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 925 264 172 0 0 chr4 44583127 44583185 -111046935 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 925 223 331 104 14 chr4 44584738 44584882 -111045238 - MIR SINE MIR -34 228 72 1 925 433 351 88 73 chr4 44585281 44585981 -111044139 + L1M5 LINE L1 3035 3718 -2428 1 925 244 372 29 14 chr4 44586302 44586441 -111043679 + L1M5 LINE L1 4028 4168 -1978 1 925 234 375 1 31 chr4 44586925 44587090 -111043030 - MIR SINE MIR -91 185 23 1 925 704 50 0 29 chr4 44587206 44587308 -111042812 + (GGGAGA)n Simple_repeat Simple_repeat 6 104 0 1 925 219 292 28 41 chr4 44587445 44587571 -111042549 + MIR SINE MIR 48 181 -87 1 925 320 94 19 0 chr4 44588180 44588233 -111041887 + (CCA)n Simple_repeat Simple_repeat 1 54 0 1 925 24 0 0 0 chr4 44589387 44589411 -111040709 + AT_rich Low_complexity Low_complexity 1 24 0 1 925 922 156 7 0 chr4 44589444 44589585 -111040535 + B1_Mur1 SINE Alu 1 142 -7 1 925 1121 290 54 36 chr4 44589611 44590173 -111039947 + L1M4 LINE L1 5188 5763 -415 1 925 210 382 13 0 chr4 44590490 44590566 -111039554 + MIRb SINE MIR 10 86 -182 1 925 259 321 12 0 chr4 44590642 44590723 -111039397 + MLT1H1 LTR MaLR 10 91 -464 1 925 411 322 74 32 chr4 44590824 44591047 -111039073 - MIR SINE MIR -28 234 4 1 925 22 56 0 0 chr4 44592206 44592242 -111037878 + AT_rich Low_complexity Low_complexity 1 36 0 1 925 306 0 0 0 chr4 44592483 44592517 -111037603 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 925 234 336 138 0 chr4 44593086 44593202 -111036918 + LTR37B LTR ERV1 176 307 -161 1 925 320 219 13 27 chr4 44593222 44593297 -111036823 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 1 925 831 177 28 0 chr4 44593309 44593450 -111036670 - B1_Mur3 SINE Alu -2 147 3 1 925 25 0 0 0 chr4 44593456 44593481 -111036639 + AT_rich Low_complexity Low_complexity 1 25 0 1 925 1055 205 14 28 chr4 44593490 44593701 -111036419 + B3 SINE B2 9 216 0 1 925 550 255 121 0 chr4 44593718 44593859 -111036261 - RSINE1 SINE B4 -5 160 3 1 925 242 314 82 82 chr4 44594709 44594917 -111035203 + MamRep434 DNA TcMar 202 409 -17 1 925 386 288 64 43 chr4 44595113 44595268 -111034852 - ID_B1 SINE B4 0 224 73 1 925 773 283 79 26 chr4 44595278 44595543 -111034577 - B4A SINE B4 0 292 14 1 925 1229 234 100 3 chr4 44597033 44597363 -111032757 - MTEa LTR MaLR 0 379 18 1 925 185 0 40 0 chr4 44597764 44597789 -111032331 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 925 293 230 135 99 chr4 44597789 44597890 -111032230 - PB1D10 SINE Alu -10 107 3 1 925 380 214 146 48 chr4 44597797 44597900 -111032220 - ID_B1 SINE B4 -34 190 78 1 925 1123 181 46 9 chr4 44598129 44598346 -111031774 + URR1B DNA MER1_type 1 225 0 1 925 21 0 0 0 chr4 44598733 44598754 -111031366 + GC_rich Low_complexity Low_complexity 1 21 0 1 925 258 32 0 0 chr4 44600035 44600066 -111030054 + (CCCTG)n Simple_repeat Simple_repeat 4 34 0 1 925 190 292 21 73 chr4 44600192 44600288 -111029832 - MIRc SINE MIR -110 158 68 1 925 252 176 0 0 chr4 44600395 44600463 -111029657 + GA-rich Low_complexity Low_complexity 2 69 0 1 925 198 0 0 0 chr4 44601169 44601191 -111028929 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 925 250 238 0 106 chr4 44601427 44601521 -111028599 - B4 SINE B4 0 292 209 1 925 432 0 0 0 chr4 44601521 44601569 -111028551 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 925 544 270 9 0 chr4 44601588 44601703 -111028417 - RSINE1 SINE B4 -24 141 26 1 925 240 273 78 43 chr4 44601742 44601857 -111028263 - PB1D9 SINE Alu -1 119 1 1 925 472 283 126 6 chr4 44601857 44601932 -111028188 - B4 SINE B4 -197 95 1 1 925 511 264 0 9 chr4 44602105 44602216 -111027904 - B1F SINE Alu -9 140 31 1 925 258 288 83 46 chr4 44602313 44602422 -111027698 + MIRb SINE MIR 74 186 -82 1 925 193 222 0 0 chr4 44604038 44604083 -111026037 + MIR SINE MIR 102 146 -62 1 925 749 204 0 0 chr4 44605747 44605879 -111024241 + B1_Mur4 SINE Alu 1 132 -18 1 925 343 340 141 10 chr4 44606379 44606578 -111023542 + MIR SINE MIR 14 238 -24 1 925 22 0 0 0 chr4 44607429 44607451 -111022669 + GC_rich Low_complexity Low_complexity 1 22 0 1 925 353 264 99 14 chr4 44608438 44608580 -111021540 + MTEb LTR MaLR 203 356 -23 1 925 1066 207 9 38 chr4 44609015 44609226 -111020894 + B3 SINE B2 2 206 -10 1 925 898 171 7 0 chr4 44609842 44609982 -111020138 - B1_Mur2 SINE Alu -8 141 1 1 925 677 182 0 8 chr4 44609998 44610120 -111020000 + B1_Mus2 SINE Alu 1 121 -26 1 925 212 0 0 35 chr4 44610142 44610171 -111019949 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 925 382 277 6 170 chr4 44610384 44610549 -111019571 + B1F2 SINE Alu 11 148 -1 1 925 192 77 0 0 chr4 44610855 44610881 -111019239 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1 925 284 0 0 27 chr4 44611473 44611510 -111018610 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1 925 1221 36 0 0 chr4 44611512 44611652 -111018468 - B1_Mus2 SINE Alu -6 141 2 1 925 260 264 157 79 chr4 44611900 44612108 -111018012 - MER102c DNA MER1_type -2112 316 72 1 925 600 261 6 95 chr4 44612183 44612266 -111017854 + RSINE1 SINE B4 12 90 -75 1 925 3369 38 5 2 chr4 44612266 44612661 -111017459 + MTA_Mm LTR MaLR 1 396 0 1 925 600 261 6 95 chr4 44612661 44612746 -111017374 + RSINE1 SINE B4 91 165 0 1 925 575 308 151 20 chr4 44614124 44614376 -111015744 + B4A SINE B4 8 292 0 1 925 387 340 37 19 chr4 44614814 44614976 -111015144 - MIRc SINE MIR -84 184 20 1 925 23 0 0 0 chr4 44615368 44615391 -111014729 + GC_rich Low_complexity Low_complexity 1 23 0 1 925 351 0 0 0 chr4 44615990 44616029 -111014091 + (CAGA)n Simple_repeat Simple_repeat 3 41 0 1 925 327 317 74 8 chr4 44616057 44616178 -111013942 + MER20B DNA MER1_type 199 327 -456 1 925 2032 179 16 19 chr4 44616440 44616815 -111013305 + ORR1D1 LTR MaLR 1 374 0 2 925 736 206 138 0 chr4 44617202 44617391 -111012729 - B3 SINE B2 0 216 2 2 925 398 210 8 0 chr4 44617399 44617518 -111012602 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 925 595 208 42 89 chr4 44617518 44617708 -111012412 - B3A SINE B2 -16 182 2 2 925 342 323 82 81 chr4 44617838 44618008 -111012112 - L1MC LINE L1 -468 5656 5484 2 925 362 227 95 89 chr4 44618158 44618201 -111011919 - B2_Mm2 SINE B2 0 195 150 2 925 215 31 0 30 chr4 44618201 44618234 -111011886 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 925 550 208 106 9 chr4 44618234 44618359 -111011761 - B3A SINE B2 -46 149 26 2 925 916 233 39 10 chr4 44618391 44618599 -111011521 + B3 SINE B2 1 214 -2 2 925 476 209 20 4 chr4 44618884 44619005 -111011115 - L1MA7 LINE L1 -2 6295 6164 2 925 2480 52 19 0 chr4 44619153 44619460 -111010660 - L1Md_F2 LINE L1 -15 6567 6255 2 925 384 235 61 0 chr4 44619959 44620057 -111010063 - PB1D10 SINE Alu -9 108 5 2 925 341 299 57 27 chr4 44620331 44620522 -111009598 - Charlie8 DNA MER1_type -2163 265 71 2 925 283 457 26 4 chr4 44621795 44622004 -111008116 - MIR SINE MIR -12 250 36 2 925 239 232 29 0 chr4 44622004 44622073 -111008047 - ID4_ SINE ID -10 73 3 2 925 283 457 26 4 chr4 44622073 44622096 -111008024 - MIR SINE MIR -227 35 13 2 925 339 105 0 0 chr4 44622486 44622543 -111007577 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 925 238 322 43 11 chr4 44623056 44623150 -111006970 - MIR3 SINE MIR -23 185 89 2 925 765 280 40 29 chr4 44623987 44624263 -111005857 - L1M5 LINE L1 -1121 5025 4747 2 925 1016 275 5 0 chr4 44624867 44625085 -111005035 - ID_B1 SINE B4 -4 220 2 2 925 291 54 0 0 chr4 44626713 44626750 -111003370 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 2 925 364 315 0 9 chr4 44626797 44626906 -111003214 + PB1D10 SINE Alu 2 109 -8 2 925 201 129 0 0 chr4 44626907 44626938 -111003182 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2 925 479 351 35 0 chr4 44627167 44627341 -111002779 + L4 LINE RTE 1687 1866 -163 2 925 494 31 16 0 chr4 44629948 44630012 -111000108 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 925 288 211 105 53 chr4 44630234 44630329 -110999791 + L1MD2 LINE L1 6259 6358 -1 2 925 269 329 129 46 chr4 44630522 44630739 -110999381 + L2c LINE L2 3136 3370 -17 2 925 197 159 0 22 chr4 44632241 44632286 -110997834 + C-rich Low_complexity Low_complexity 4 47 0 2 925 192 247 299 0 chr4 44632534 44632631 -110997489 - MIR SINE MIR -24 238 113 2 925 397 213 40 60 chr4 44632831 44632981 -110997139 + CYRA11_Mm Unknown Y-chromosome 174 320 -297 2 925 1115 87 132 6 chr4 44632862 44633036 -110997084 - URR1A DNA MER1_type -30 196 1 2 925 654 251 10 72 chr4 44633170 44633363 -110996757 + B3A SINE B2 3 183 -15 2 925 29 28 0 0 chr4 44633404 44633440 -110996680 + AT_rich Low_complexity Low_complexity 1 36 0 2 925 982 198 33 24 chr4 44633494 44633706 -110996414 - B3 SINE B2 -1 215 2 2 925 385 268 0 0 chr4 44633749 44633831 -110996289 - ID4_ SINE ID 0 83 2 2 925 187 162 0 26 chr4 44636612 44636650 -110993470 + L2a LINE L2 3305 3341 -85 2 925 193 138 0 0 chr4 44636967 44637001 -110993119 + MIRc SINE MIR 104 140 -128 2 925 692 218 0 33 chr4 44637837 44638017 -110992103 + L1MD3 LINE L1 7808 7981 -14 2 925 228 194 54 72 chr4 44638226 44638337 -110991783 + Lx9 LINE L1 6138 6246 -1398 2 925 210 71 0 0 chr4 44638347 44638375 -110991745 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 925 5649 208 62 11 chr4 44638378 44639640 -110990480 + Lx9 LINE L1 6312 7637 -7 2 925 349 244 149 16 chr4 44639880 44640001 -110990119 + ID_B1 SINE B4 80 216 -8 2 925 1203 79 0 0 chr4 44640002 44640166 -110989954 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 2 925 477 0 0 0 chr4 44640192 44640245 -110989875 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 925 706 261 0 0 chr4 44640257 44640391 -110989729 - RSINE1 SINE B4 -29 136 3 2 925 282 250 0 14 chr4 44640786 44640855 -110989265 + Lx8 LINE L1 7103 7170 -303 2 925 610 242 98 0 chr4 44641056 44641188 -110988932 + B1_Mur1 SINE Alu 2 146 -3 2 925 450 328 43 0 chr4 44641377 44641563 -110988557 - Tigger5 DNA MER2_type -3 2403 2210 2 925 590 226 229 5 chr4 44641704 44641909 -110988211 - B4 SINE B4 -12 280 30 2 925 447 68 0 0 chr4 44641991 44642050 -110988070 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 2 925 1018 136 0 0 chr4 44642137 44642277 -110987843 - B1_Mur4 SINE Alu -8 142 3 2 925 341 162 0 150 chr4 44642356 44642436 -110987684 - PB1D10 SINE Alu 0 117 50 2 925 697 221 30 30 chr4 44644070 44644205 -110985915 + RSINE1 SINE B4 2 136 -29 2 925 278 403 42 27 chr4 44644962 44645222 -110984898 - L4 LINE RTE -885 1144 881 2 925 345 311 88 28 chr4 44645385 44645567 -110984553 + MIR SINE MIR 53 245 -17 2 925 267 224 17 0 chr4 44648275 44648333 -110981787 - L3 LINE CR1 -332 4157 4099 2 925 1037 197 16 0 chr4 44648554 44648737 -110981383 + B3 SINE B2 1 186 -30 2 925 827 168 207 0 chr4 44649367 44649546 -110980574 - B3 SINE B2 0 216 1 2 925 307 337 160 87 chr4 44649895 44650470 -110979650 - L1MEe LINE L1 -3696 1158 542 2 925 210 163 0 0 chr4 44651111 44651128 -110978992 + (TAA)n Simple_repeat Simple_repeat 1 17 0 2 925 1575 53 0 0 chr4 44651128 44651317 -110978803 + B2_Mm1a SINE B2 3 191 -2 2 925 210 163 0 0 chr4 44651317 44651342 -110978778 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2 925 682 288 47 5 chr4 44651497 44651710 -110978410 - ID_B1 SINE B4 -1 223 2 2 925 180 111 0 0 chr4 44651881 44651908 -110978212 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2 925 191 329 47 0 chr4 44652077 44652162 -110977958 - MIR3 SINE MIR -11 197 109 2 925 876 171 8 2 chr4 44652552 44653065 -110977055 + (TG)n Simple_repeat Simple_repeat 1 515 0 2 925 713 185 8 0 chr4 44653114 44653378 -110976742 + (TG)n Simple_repeat Simple_repeat 1 266 0 2 925 468 220 0 0 chr4 44655328 44655446 -110974674 + (CA)n Simple_repeat Simple_repeat 2 119 0 2 925 214 336 81 32 chr4 44656166 44656289 -110973831 - MIRc SINE MIR -94 174 46 2 925 246 62 0 0 chr4 44657130 44657162 -110972958 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 2 925 447 19 0 0 chr4 44657332 44657384 -110972736 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 925 182 167 0 0 chr4 44657474 44657510 -110972610 + L2 LINE L2 3026 3061 -358 2 925 293 304 65 11 chr4 44657733 44657826 -110972294 + MIR3 SINE MIR 78 175 -33 2 925 203 265 106 58 chr4 44659153 44659257 -110970863 - MIR3 SINE MIR -10 198 90 2 925 334 299 153 19 chr4 44659429 44659644 -110970476 + L1MC LINE L1 5587 5830 -2052 2 925 1433 56 6 17 chr4 44659916 44660097 -110970023 + B2_Mm2 SINE B2 1 179 -16 2 925 1082 112 0 6 chr4 44660097 44660267 -110969853 + (GGAA)n Simple_repeat Simple_repeat 3 171 0 2 925 186 191 0 0 chr4 44661188 44661230 -110968890 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 925 516 287 0 0 chr4 44662063 44662178 -110967942 + PB1D10 SINE Alu 2 116 -1 2 925 28 29 0 0 chr4 44662219 44662254 -110967866 + AT_rich Low_complexity Low_complexity 1 35 0 2 925 640 247 50 50 chr4 44662293 44662472 -110967648 - B3A SINE B2 0 198 20 2 925 183 368 55 28 chr4 44663250 44663359 -110966761 - L2b LINE L2 -51 3324 3213 2 925 282 271 226 16 chr4 44664394 44664518 -110965602 + MIR3 SINE MIR 3 152 -56 2 925 404 324 0 0 chr4 44664529 44664640 -110965480 + ID_B1 SINE B4 79 189 -35 2 925 488 220 30 0 chr4 44664541 44664641 -110965479 + B1F1 SINE Alu 10 112 -37 2 925 242 176 27 34 chr4 44664877 44664890 -110965230 + (TCTCTG)n Simple_repeat Simple_repeat 1 12 0 2 925 258 105 0 0 chr4 44664890 44664928 -110965192 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 925 242 176 27 34 chr4 44664928 44665061 -110965059 + (TCTCTG)n Simple_repeat Simple_repeat 5 138 0 2 925 735 59 0 0 chr4 44665069 44665170 -110964950 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 925 742 229 0 0 chr4 44665503 44665643 -110964477 + ID_B1 SINE B4 85 224 0 2 925 272 275 94 77 chr4 44665643 44665683 -110964437 - YREP_Mm Unknown Unknown -1499 312 130 2 925 268 234 0 70 chr4 44666590 44666661 -110963459 - MIRc SINE MIR -86 122 60 2 925 202 200 0 0 chr4 44666752 44666797 -110963323 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 925 268 211 0 0 chr4 44666796 44666853 -110963267 + GA-rich Low_complexity Low_complexity 1 57 0 2 925 366 211 136 16 chr4 44666928 44667053 -110963067 - B1F SINE Alu -8 141 2 2 925 362 282 88 37 chr4 44667066 44667202 -110962918 + MIR SINE MIR 99 241 -21 2 925 422 321 31 6 chr4 44668460 44668623 -110961497 - MIR SINE MIR -79 183 17 2 925 221 310 60 66 chr4 44668680 44668847 -110961273 - L2c LINE L2 -222 3165 2998 2 925 198 0 0 0 chr4 44669745 44669767 -110960353 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 925 201 299 71 45 chr4 44670351 44670463 -110959657 - MIRc SINE MIR -66 202 88 2 925 301 327 123 11 chr4 44671737 44671997 -110958123 - B4A SINE B4 -2 290 2 2 925 296 313 141 41 chr4 44672008 44672178 -110957942 + L2a LINE L2 2953 3139 -287 2 925 840 145 21 0 chr4 44672205 44672350 -110957770 + B1_Mur4 SINE Alu 3 150 0 2 925 316 364 16 54 chr4 44672492 44672678 -110957442 + L2a LINE L2 3247 3425 -1 2 925 247 260 14 0 chr4 44673150 44673223 -110956897 + PB1D10 SINE Alu 37 110 -7 2 925 610 252 14 22 chr4 44673254 44673392 -110956728 + ID_B1 SINE B4 80 216 -8 3 925 198 0 0 0 chr4 44673394 44673416 -110956704 + (CAA)n Simple_repeat Simple_repeat 2 23 0 3 925 247 219 7 85 chr4 44673475 44673569 -110956551 - L2c LINE L2 -224 3163 3073 3 925 416 278 132 0 chr4 44673746 44673897 -110956223 - ID_B1 SINE B4 -53 171 1 3 925 895 233 113 8 chr4 44674030 44674277 -110955843 - B4A SINE B4 -18 274 2 3 925 285 248 250 26 chr4 44674429 44674545 -110955575 + ID_B1 SINE B4 83 224 0 3 925 1118 326 81 26 chr4 44674567 44675097 -110955023 + MER20B DNA MER1_type 162 720 -63 3 925 466 231 9 37 chr4 44675376 44675484 -110954636 + ID_B1 SINE B4 65 169 -55 3 925 417 257 29 0 chr4 44675405 44675510 -110954610 + PB1D10 SINE Alu 10 117 0 3 925 402 250 113 42 chr4 44675650 44675792 -110954328 + ID_B1 SINE B4 72 223 -1 3 925 283 305 77 32 chr4 44675890 44676046 -110954074 + MIR SINE MIR 19 181 -81 3 925 228 67 0 0 chr4 44676755 44676785 -110953335 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 925 32 0 0 0 chr4 44677071 44677103 -110953017 + GC_rich Low_complexity Low_complexity 1 32 0 3 925 22 99 0 0 chr4 44677277 44677348 -110952772 + GC_rich Low_complexity Low_complexity 1 71 0 3 925 704 255 6 0 chr4 44677859 44678020 -110952100 - ID_B1 SINE B4 -3 221 60 3 925 211 286 130 20 chr4 44678067 44678167 -110951953 - PB1D9 SINE Alu 0 120 10 3 925 313 305 103 11 chr4 44678440 44678544 -110951576 + PB1D10 SINE Alu 1 115 -34 3 925 582 366 22 15 chr4 44678558 44678827 -110951293 + B4A SINE B4 1 271 -21 3 925 276 30 0 0 chr4 44678875 44678908 -110951212 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 925 186 43 0 0 chr4 44679255 44679278 -110950842 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 925 200 232 0 35 chr4 44679446 44679504 -110950616 + GA-rich Low_complexity Low_complexity 5 60 0 3 925 507 261 74 15 chr4 44679724 44679926 -110950194 + ID_B1 SINE B4 1 214 -10 3 925 263 216 145 0 chr4 44680018 44680103 -110950017 + B1F SINE Alu 1 104 -16 3 925 226 180 146 24 chr4 44680698 44680780 -110949340 + MIR SINE MIR 30 125 -143 3 925 204 321 53 87 chr4 44681202 44681352 -110948768 - L2b LINE L2 -32 3343 3199 3 925 261 0 0 0 chr4 44682014 44682043 -110948077 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 925 210 190 26 56 chr4 44682109 44682171 -110947949 - MIRc SINE MIR -159 109 43 3 925 276 200 122 0 chr4 44682236 44682326 -110947794 - MIRb SINE MIR -121 147 47 3 925 401 239 11 11 chr4 44682497 44682590 -110947530 + Tigger16a DNA Tigger 94 186 -747 3 925 890 286 145 6 chr4 44683427 44683758 -110946362 + Charlie1b DNA MER1_type 13 389 -134 3 925 591 15 0 0 chr4 44683970 44684038 -110946082 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 925 296 250 47 12 chr4 44687310 44687395 -110942725 - L3 LINE CR1 -103 4386 4299 3 925 300 330 9 9 chr4 44687681 44687788 -110942332 + MER3 DNA MER1_type 38 144 -65 3 925 493 269 45 0 chr4 44687777 44687911 -110942209 - B1F SINE Alu 0 149 10 3 925 233 314 30 78 chr4 44687977 44688143 -110941977 + RSINE1 SINE B4 4 161 -4 3 925 22 0 0 0 chr4 44688154 44688176 -110941944 + AT_rich Low_complexity Low_complexity 1 22 0 3 925 392 253 235 20 chr4 44688263 44688416 -110941704 + Charlie5 DNA MER1_type 2358 2543 -81 3 925 315 49 0 0 chr4 44688416 44688457 -110941663 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 925 237 254 0 73 chr4 44688498 44688566 -110941554 - B4A SINE B4 -15 277 215 3 925 340 99 0 27 chr4 44688567 44688640 -110941480 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 3 925 725 264 40 66 chr4 44688699 44688926 -110941194 - B4A SINE B4 -71 221 1 3 925 411 176 23 23 chr4 44689005 44689092 -110941028 - ID_B1 SINE B4 -2 222 136 3 925 296 162 203 0 chr4 44689118 44689192 -110940928 - PB1D10 SINE Alu 0 117 29 3 925 789 142 0 0 chr4 44691383 44691597 -110938523 + (CA)n Simple_repeat Simple_repeat 1 214 0 3 925 279 0 0 0 chr4 44692736 44692767 -110937353 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 925 204 242 194 0 chr4 44693626 44693688 -110936432 + MIRc SINE MIR 46 119 -149 3 925 223 75 61 70 chr4 44694011 44694126 -110935994 + T-rich Low_complexity Low_complexity 2 115 0 3 925 794 235 42 3 chr4 44694477 44694676 -110935444 + B3A SINE B2 1 203 -13 3 926 770 246 38 0 chr4 44695668 44695851 -110934269 + ID_B1 SINE B4 1 190 -34 3 926 728 55 18 0 chr4 44695872 44695981 -110934139 + (CAGAGA)n Simple_repeat Simple_repeat 2 112 0 3 926 211 273 0 0 chr4 44696146 44696190 -110933930 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 3 926 595 229 14 28 chr4 44696198 44696342 -110933778 - ID_B1 SINE B4 -1 223 82 3 926 267 308 31 52 chr4 44697871 44697967 -110932153 - RSINE1 SINE B4 -61 104 11 3 926 314 283 0 42 chr4 44697978 44698074 -110932046 - B4 SINE B4 -200 92 1 3 926 491 250 37 9 chr4 44698122 44698231 -110931889 + PB1D10 SINE Alu 6 117 0 3 926 513 0 0 0 chr4 44698851 44698908 -110931212 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 926 454 264 49 16 chr4 44698909 44699032 -110931088 - RSINE1 SINE B4 -38 127 1 3 926 384 22 0 0 chr4 44699038 44699083 -110931037 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 926 215 299 21 65 chr4 44699344 44699437 -110930683 + MIR SINE MIR 110 198 -64 3 926 514 188 0 0 chr4 44699553 44699649 -110930471 + PB1D10 SINE Alu 19 114 -3 3 926 240 269 204 0 chr4 44699728 44699821 -110930299 - MIRm SINE MIR -132 144 33 3 926 584 242 138 31 chr4 44700091 44700287 -110929833 + ID_B1 SINE B4 1 217 -7 3 926 500 326 48 7 chr4 44700296 44700565 -110929555 + B4A SINE B4 2 281 -11 3 926 204 40 0 0 chr4 44700583 44700608 -110929512 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 926 344 297 9 9 chr4 44700624 44700736 -110929384 + PB1D10 SINE Alu 6 117 0 3 926 417 298 61 161 chr4 44702125 44702405 -110927715 + MER102a DNA MER1_type 73 324 -6 3 926 459 241 119 44 chr4 44702652 44702904 -110927216 + MER33 DNA MER1_type 43 313 -11 3 926 186 329 12 37 chr4 44703182 44703264 -110926856 - MIR3 SINE MIR -22 186 107 3 926 740 225 69 41 chr4 44703411 44703629 -110926491 - ID_B1 SINE B4 0 224 1 3 926 370 263 21 0 chr4 44703696 44703791 -110926329 + PB1D9 SINE Alu 12 108 -12 3 926 372 133 0 0 chr4 44703798 44703858 -110926262 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 3 926 243 263 167 10 chr4 44703915 44704011 -110926109 - PB1D10 SINE Alu 0 117 7 3 926 590 283 6 50 chr4 44705099 44705259 -110924861 - RSINE1 SINE B4 -10 155 3 3 926 428 200 27 0 chr4 44705259 44705366 -110924754 + MER33 DNA MER1_type 147 256 -68 3 926 1211 41 0 0 chr4 44705385 44705532 -110924588 - B1_Mus2 SINE Alu 0 147 1 3 926 195 129 0 0 chr4 44705573 44705604 -110924516 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 3 926 425 207 23 11 chr4 44706397 44706485 -110923635 + ID_B1 SINE B4 83 171 -53 3 926 396 0 0 0 chr4 44706550 44706594 -110923526 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 3 926 197 274 93 42 chr4 44707045 44707163 -110922957 - MIRc SINE MIR -123 145 22 3 926 365 321 80 40 chr4 44707690 44707914 -110922206 + MIRc SINE MIR 22 254 -14 3 926 209 265 29 14 chr4 44708832 44708901 -110921219 + CT-rich Low_complexity Low_complexity 4 73 0 3 926 450 0 0 0 chr4 44709589 44709639 -110920481 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 3 926 191 61 30 0 chr4 44711146 44711179 -110918941 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 926 541 53 53 0 chr4 44714123 44714217 -110915903 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 926 446 47 31 0 chr4 44715524 44715588 -110914532 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 3 926 200 257 25 86 chr4 44717906 44717987 -110912133 + MIR3 SINE MIR 109 184 -24 3 926 253 280 158 16 chr4 44719380 44719507 -110910613 - MIR3 SINE MIR -10 198 54 3 926 189 366 0 0 chr4 44719904 44719975 -110910145 - MIRb SINE MIR -135 133 63 3 926 396 91 0 0 chr4 44720219 44720285 -110909835 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 926 22 0 0 0 chr4 44720583 44720605 -110909515 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 306 0 0 0 chr4 44722275 44722309 -110907811 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 926 399 21 0 0 chr4 44723095 44723143 -110906977 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 926 845 110 19 7 chr4 44723342 44723497 -110906623 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 3 926 21 36 0 0 chr4 44727652 44727680 -110902440 + AT_rich Low_complexity Low_complexity 1 28 0 3 926 432 0 0 0 chr4 44728966 44729014 -110901106 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 926 285 232 92 1 chr4 44731189 44731277 -110898843 + PB1D10 SINE Alu 2 98 -22 3 926 198 0 0 0 chr4 44731289 44731311 -110898809 + (GAAA)n Simple_repeat Simple_repeat 1 22 0 3 926 433 339 23 8 chr4 44731749 44731880 -110898240 - ID_B1 SINE B4 -10 214 82 3 926 1091 67 0 7 chr4 44731980 44732130 -110897990 + (GAA)n Simple_repeat Simple_repeat 1 149 0 3 926 198 224 35 0 chr4 44732540 44732598 -110897522 + MIRb SINE MIR 112 171 -97 3 926 369 312 7 14 chr4 44733133 44733276 -110896844 + HAL1-2a_MD LINE L1 2351 2492 -532 3 926 378 124 0 33 chr4 44733276 44733368 -110896752 + (CCA)n Simple_repeat Simple_repeat 2 90 0 4 926 559 314 125 44 chr4 44733488 44733808 -110896312 + ORR1E LTR MaLR 5 350 -9 4 926 195 276 195 0 chr4 44733980 44734103 -110896017 - L3 LINE CR1 -119 4370 4224 4 926 396 0 0 0 chr4 44734174 44734218 -110895902 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 926 304 176 0 42 chr4 44734540 44734554 -110895566 + B4 SINE B4 77 144 -148 4 926 356 73 0 35 chr4 44734554 44734611 -110895509 + B1_Mus2 SINE Alu 5 59 -88 4 926 375 154 0 0 chr4 44734613 44734678 -110895442 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 4 926 269 147 59 84 chr4 44734679 44734798 -110895322 + RLTR25B LTR ERVK 397 512 -516 4 926 738 57 0 9 chr4 44734723 44734819 -110895301 + B1_Mus2 SINE Alu 42 137 -10 4 926 225 0 48 48 chr4 44734819 44734861 -110895259 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 926 424 143 12 12 chr4 44734894 44734979 -110895141 + CT-rich Low_complexity Low_complexity 4 88 0 4 926 32 26 0 0 chr4 44735130 44735169 -110894951 + AT_rich Low_complexity Low_complexity 1 39 0 4 926 438 57 14 0 chr4 44735182 44735247 -110894873 - B2_Mm2 SINE B2 -82 116 46 4 926 789 101 273 0 chr4 44735259 44735398 -110894722 - B2_Mm2 SINE B2 -14 181 5 4 926 314 222 49 0 chr4 44735541 44735622 -110894498 - PB1D10 SINE Alu -1 116 32 4 926 294 265 109 74 chr4 44735555 44735730 -110894390 - ID_B1 SINE B4 -36 188 8 4 926 290 253 63 0 chr4 44736863 44736958 -110893162 - MIRc SINE MIR -111 157 57 4 926 334 243 13 51 chr4 44737012 44737090 -110893030 - ID SINE ID -149 75 1 4 926 719 273 27 18 chr4 44737465 44737685 -110892435 + ID_B1 SINE B4 3 224 0 4 926 204 125 0 0 chr4 44738065 44738097 -110892023 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 926 283 265 145 0 chr4 44738104 44738187 -110891933 - PB1D10 SINE Alu -21 96 2 4 926 280 282 0 14 chr4 44738372 44738444 -110891676 + B3A SINE B2 9 79 -119 4 926 246 32 0 0 chr4 44738465 44738496 -110891624 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 926 1226 112 0 74 chr4 44738519 44738721 -110891399 - B2_Mm2 SINE B2 -8 187 1 4 926 314 230 13 13 chr4 44739822 44739897 -110890223 - PB1D10 SINE Alu -2 115 41 4 926 271 281 4 38 chr4 44739917 44740006 -110890114 - PB1D10 SINE Alu -50 99 11 4 926 225 289 32 95 chr4 44739989 44740115 -110890005 - MT2B LTR ERVL -317 284 167 4 926 377 208 5 52 chr4 44740021 44740117 -110890003 - PB1D10 SINE Alu -28 92 1 4 926 814 241 12 0 chr4 44740262 44740432 -110889688 + B3A SINE B2 1 172 -26 4 926 455 253 50 33 chr4 44741421 44741601 -110888519 - MIR3 SINE MIR -6 202 20 4 926 1066 235 107 40 chr4 44741944 44742290 -110887830 - RLTR14 LTR ERV1 -13 369 1 4 926 284 299 23 0 chr4 44742583 44742670 -110887450 + Lx8 LINE L1 7043 7131 -342 4 926 315 0 0 0 chr4 44742673 44742708 -110887412 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 926 270 317 68 27 chr4 44742720 44742866 -110887254 + RMER15 LTR ERVL 359 510 -65 4 926 1229 178 51 5 chr4 44742896 44743111 -110887009 - URR1B DNA MER1_type 0 225 1 4 926 351 298 85 18 chr4 44743495 44743659 -110886461 + MIR SINE MIR 58 232 -30 4 926 408 236 54 9 chr4 44743719 44743830 -110886290 - PB1D10 SINE Alu -1 116 1 4 926 468 0 0 0 chr4 44744597 44744649 -110885471 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 926 331 293 10 20 chr4 44744717 44744818 -110885302 + MIRc SINE MIR 61 160 -108 4 926 443 189 32 0 chr4 44744834 44744929 -110885191 + MTE2b LTR MaLR 13 110 -269 4 926 302 347 0 0 chr4 44745412 44745507 -110884613 + L3 LINE CR1 4306 4400 -89 4 926 504 32 0 0 chr4 44746300 44746362 -110883758 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 926 763 209 88 0 chr4 44746527 44746709 -110883411 - B3 SINE B2 -18 198 1 4 926 1539 207 60 36 chr4 44746973 44747359 -110882761 + MTD LTR MaLR 11 405 -14 4 926 223 362 0 0 chr4 44747388 44747446 -110882674 - ID4_ SINE ID -11 72 15 4 926 207 125 0 0 chr4 44747446 44747486 -110882634 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 926 229 204 0 22 chr4 44747489 44747534 -110882586 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 926 445 236 45 18 chr4 44747540 44747652 -110882468 - B4 SINE B4 0 292 178 4 926 2140 152 63 15 chr4 44747682 44748077 -110882043 + MTC LTR MaLR 4 417 -4 4 926 641 208 8 23 chr4 44748131 44748264 -110881856 + B1_Mur3 SINE Alu 19 149 0 4 926 537 262 39 15 chr4 44748273 44748478 -110881642 - MER63D DNA AcHobo -825 236 27 4 926 419 0 0 19 chr4 44748964 44749016 -110881104 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 926 435 19 0 0 chr4 44749143 44749195 -110880925 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 926 246 160 0 0 chr4 44749196 44749246 -110880874 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 4 926 289 261 88 26 chr4 44749246 44749360 -110880760 - RSINE1 SINE B4 -43 122 2 4 926 589 279 8 0 chr4 44749442 44749571 -110880549 + RSINE1 SINE B4 11 140 -25 4 926 385 224 6 188 chr4 44749575 44749756 -110880364 + MLT1C LTR MaLR 318 465 -2 4 926 653 312 21 5 chr4 44750043 44750230 -110879890 - ID_B1 SINE B4 -11 213 24 4 926 786 153 92 0 chr4 44750763 44750926 -110879194 + ORR1C1 LTR MaLR 1 178 -200 4 926 893 150 0 22 chr4 44750934 44751118 -110879002 + CT-rich Low_complexity Low_complexity 1 180 0 4 926 346 162 29 29 chr4 44751118 44751188 -110878932 + C-rich Low_complexity Low_complexity 1 70 0 4 926 770 81 0 9 chr4 44751188 44751300 -110878820 + (TTC)n Simple_repeat Simple_repeat 3 113 0 4 926 297 0 0 0 chr4 44751300 44751333 -110878787 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 926 1143 180 0 0 chr4 44751333 44751544 -110878576 + ORR1C1 LTR MaLR 166 376 -2 4 926 302 261 9 61 chr4 44751969 44752097 -110878023 + L1M4c LINE L1 2057 2158 -4692 4 926 247 325 25 49 chr4 44752097 44752178 -110877942 + RSINE1 SINE B4 3 81 -84 4 926 439 261 174 23 chr4 44752283 44752527 -110877593 + L1M4c LINE L1 2146 2431 -4419 4 926 610 244 26 87 chr4 44752527 44752756 -110877364 - ID_B1 SINE B4 -8 216 2 4 926 439 261 174 23 chr4 44752756 44752856 -110877264 + L1M4c LINE L1 2432 2542 -4308 4 926 302 291 79 49 chr4 44752890 44752992 -110877128 + L1M4c LINE L1 2596 2694 -4156 4 926 417 305 56 90 chr4 44752992 44753280 -110876840 + B4A SINE B4 1 278 -14 4 926 302 291 79 49 chr4 44753280 44753481 -110876639 + L1M4c LINE L1 2695 2907 -3943 4 926 305 189 68 0 chr4 44753515 44753589 -110876531 - MLT2B4 LTR ERVL -385 171 93 4 926 485 278 78 13 chr4 44753651 44753881 -110876239 - L1M4 LINE L1 -3630 2516 2272 4 926 3446 264 75 80 chr4 44753882 44755112 -110875008 + L1M4c LINE L1 3920 5108 -1740 4 926 201 147 0 0 chr4 44755112 44755146 -110874974 + (CATG)n Simple_repeat Simple_repeat 1 34 0 4 926 3446 264 75 80 chr4 44755146 44755613 -110874507 + L1M4c LINE L1 5109 5609 -1239 4 926 692 269 60 0 chr4 44755698 44755899 -110874221 + B4A SINE B4 1 213 -79 4 926 762 194 182 6 chr4 44755935 44756111 -110874009 + B3 SINE B2 3 209 -7 4 926 775 168 65 14 chr4 44756129 44756268 -110873852 + B1_Mus2 SINE Alu 2 147 0 4 926 430 282 15 46 chr4 44756288 44756418 -110873702 + RSINE1 SINE B4 3 128 -37 4 926 261 0 0 0 chr4 44756441 44756470 -110873650 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 926 232 318 16 0 chr4 44756470 44756533 -110873587 + B4A SINE B4 226 289 -3 4 926 264 122 0 0 chr4 44756533 44756574 -110873546 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 926 207 100 0 0 chr4 44756577 44756607 -110873513 + (A)n Simple_repeat Simple_repeat 1 30 0 4 926 307 258 0 31 chr4 44756607 44756703 -110873417 + L1MA4 LINE L1 5513 5605 -695 4 926 486 252 59 30 chr4 44756703 44756838 -110873282 + B1F SINE Alu 10 148 -1 4 926 186 103 0 0 chr4 44756839 44756868 -110873252 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 926 231 236 167 0 chr4 44757106 44757178 -110872942 + ID_B1 SINE B4 137 220 -4 4 926 1284 45 6 22 chr4 44757283 44757465 -110872655 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 4 926 325 188 12 12 chr4 44757465 44757551 -110872569 + C-rich Low_complexity Low_complexity 5 90 0 4 926 665 160 8 0 chr4 44757549 44757674 -110872446 + CT-rich Low_complexity Low_complexity 4 129 0 4 926 481 196 41 0 chr4 44757721 44757818 -110872302 - B3A SINE B2 -97 101 1 4 926 489 223 8 16 chr4 44758027 44758150 -110871970 + L1MA4 LINE L1 5762 5883 -417 4 926 288 0 0 0 chr4 44758191 44758223 -110871897 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 926 639 39 0 0 chr4 44758224 44758302 -110871818 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 4 926 252 271 0 49 chr4 44758370 44758533 -110871587 + (CATG)n Simple_repeat Simple_repeat 2 156 0 4 926 1599 150 15 77 chr4 44758705 44759009 -110871111 - MTC LTR MaLR 0 421 131 4 926 1037 111 91 23 chr4 44759009 44759185 -110870935 - B2_Mm2 SINE B2 -5 190 3 4 926 1599 150 15 77 chr4 44759185 44759220 -110870900 - MTC LTR MaLR -291 130 103 4 926 8482 110 97 18 chr4 44759223 44760615 -110869505 + Lx4A LINE L1 5551 7047 -11 4 926 663 48 0 0 chr4 44760619 44760702 -110869418 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 4 926 227 167 0 40 chr4 44760702 44760747 -110869373 - MTC LTR MaLR -298 123 80 4 926 660 170 0 0 chr4 44760816 44760928 -110869192 - B1_Mus2 SINE Alu -18 129 18 4 926 463 173 0 0 chr4 44760935 44761016 -110869104 - MTC LTR MaLR -340 81 1 4 926 257 219 31 0 chr4 44761035 44761131 -110868989 + B3 SINE B2 137 216 0 4 926 3542 57 39 2 chr4 44762501 44762959 -110867161 - MT2C_Mm LTR ERVL 0 475 1 4 926 492 18 0 0 chr4 44763163 44763220 -110866900 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 926 306 191 29 29 chr4 44763510 44763580 -110866540 - ID4_ SINE ID -12 71 2 4 926 787 139 7 42 chr4 44764006 44764149 -110865971 - B1_Mus1 SINE Alu -1 147 10 4 926 336 48 0 0 chr4 44764595 44764637 -110865483 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 926 458 343 33 6 chr4 44764677 44764859 -110865261 - B4A SINE B4 -21 271 85 4 926 216 0 0 0 chr4 44764930 44764954 -110865166 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 926 195 42 0 0 chr4 44764997 44765021 -110865099 + (T)n Simple_repeat Simple_repeat 1 24 0 5 926 712 253 19 81 chr4 44766093 44766304 -110863816 - B3A SINE B2 0 198 1 5 926 606 308 19 6 chr4 44766766 44766926 -110863194 - RSINE1 SINE B4 -2 163 2 5 926 275 319 87 58 chr4 44767064 44767237 -110862883 - MTEa LTR MaLR -196 183 6 5 926 656 179 87 29 chr4 44767331 44767469 -110862651 + B1_Mur2 SINE Alu 3 148 -1 5 926 225 65 0 0 chr4 44768035 44768066 -110862054 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 926 499 260 136 48 chr4 44768507 44768713 -110861407 - ID_B1 SINE B4 0 224 1 5 926 1186 62 0 0 chr4 44770260 44770406 -110859714 - B1_Mm SINE Alu 0 147 2 5 926 238 293 0 0 chr4 44771037 44771095 -110859025 + ID4 SINE ID 23 80 -3 5 926 352 255 48 48 chr4 44774039 44774142 -110855978 + PB1D7 SINE Alu 18 120 0 5 926 1309 113 93 0 chr4 44774341 44774545 -110855575 + URR1A DNA MER1_type 4 226 0 5 926 276 303 118 89 chr4 44776173 44776293 -110853827 - MER58A DNA MER1_type -15 209 85 5 926 865 257 28 14 chr4 44776293 44776506 -110853614 + ID_B1 SINE B4 5 220 -4 5 926 276 303 118 89 chr4 44776506 44776588 -110853532 - MER58A DNA MER1_type -140 84 1 5 926 363 44 0 0 chr4 44776601 44776646 -110853474 + (TAA)n Simple_repeat Simple_repeat 3 47 0 5 926 244 309 87 0 chr4 44776999 44777125 -110852995 - Charlie23a DNA MER1_type -44 295 159 5 926 21 0 0 0 chr4 44777431 44777452 -110852668 + AT_rich Low_complexity Low_complexity 1 21 0 5 926 29 47 0 0 chr4 44777885 44777928 -110852192 + AT_rich Low_complexity Low_complexity 1 43 0 5 926 447 297 0 38 chr4 44777974 44778079 -110852041 - RSINE1 SINE B4 -1 164 64 5 926 1498 287 65 30 chr4 44778444 44778936 -110851184 - Tigger7 DNA MER2_type -1982 509 1 5 926 2935 170 87 36 chr4 44779766 44780460 -110849660 - Lx9 LINE L1 -6 7638 6910 5 926 36 68 0 11 chr4 44780470 44780517 -110849603 + AT_rich Low_complexity Low_complexity 1 47 0 5 926 3239 56 35 5 chr4 44780517 44780949 -110849171 - L1Md_F2 LINE L1 -12 6570 6126 5 926 36 68 0 11 chr4 44780949 44780990 -110849130 + AT_rich Low_complexity Low_complexity 1 41 0 5 926 1162 41 0 7 chr4 44781213 44781361 -110848759 - B1_Mus2 SINE Alu 0 147 1 5 926 378 0 0 0 chr4 44782238 44782280 -110847840 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 926 762 69 125 44 chr4 44782642 44782778 -110847342 - B1_Mus2 SINE Alu 0 147 1 5 926 718 263 82 0 chr4 44783050 44783244 -110846876 + B3 SINE B2 1 210 -6 5 926 22 0 0 0 chr4 44783246 44783268 -110846852 + AT_rich Low_complexity Low_complexity 1 22 0 5 926 865 291 45 11 chr4 44783268 44783536 -110846584 + B4 SINE B4 16 292 0 5 926 341 248 98 10 chr4 44783605 44783707 -110846413 + PB1D10 SINE Alu 1 111 -6 5 926 691 179 44 15 chr4 44783718 44783854 -110846266 + B1F SINE Alu 10 149 0 5 926 1033 79 0 7 chr4 44784183 44784324 -110845796 + B1_Mus1 SINE Alu 1 140 -8 5 926 470 189 151 41 chr4 44784531 44784697 -110845423 - B3 SINE B2 -9 186 1 5 926 22 0 0 0 chr4 44784724 44784746 -110845374 + AT_rich Low_complexity Low_complexity 1 22 0 5 926 195 42 0 0 chr4 44787437 44787461 -110842659 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5 926 25 31 0 0 chr4 44788443 44788475 -110841645 + AT_rich Low_complexity Low_complexity 1 32 0 5 926 22 0 0 0 chr4 44788888 44788910 -110841210 + AT_rich Low_complexity Low_complexity 1 22 0 5 926 22 56 0 0 chr4 44789379 44789415 -110840705 + AT_rich Low_complexity Low_complexity 1 36 0 5 926 21 0 0 0 chr4 44790475 44790496 -110839624 + AT_rich Low_complexity Low_complexity 1 21 0 5 926 429 20 0 0 chr4 44792323 44792373 -110837747 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 926 207 0 0 0 chr4 44792383 44792406 -110837714 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 926 320 276 128 20 chr4 44793381 44793529 -110836591 + Lx9 LINE L1 5808 5971 -1673 5 926 24 0 0 0 chr4 44794150 44794174 -110835946 + AT_rich Low_complexity Low_complexity 1 24 0 5 926 268 327 0 68 chr4 44794945 44795063 -110835057 - L2c LINE L2 -3 3384 3275 5 926 22 35 0 0 chr4 44795897 44795926 -110834194 + AT_rich Low_complexity Low_complexity 1 29 0 5 926 295 278 0 53 chr4 44797422 44797498 -110832622 + ID4_ SINE ID 2 73 -10 5 926 21 57 0 0 chr4 44797659 44797694 -110832426 + AT_rich Low_complexity Low_complexity 1 35 0 5 926 345 264 27 45 chr4 44798233 44798344 -110831776 - RSINE1 SINE B4 0 165 57 5 926 4276 55 0 4 chr4 44799137 44799683 -110830437 + L1Md_F2 LINE L1 6030 6573 -9 5 926 236 259 0 0 chr4 44800304 44800358 -110829762 - B4 SINE B4 -235 57 4 5 926 486 247 141 31 chr4 44800460 44800623 -110829497 + B3A SINE B2 2 182 -16 5 926 22 35 0 0 chr4 44800743 44800772 -110829348 + AT_rich Low_complexity Low_complexity 1 29 0 5 926 2436 266 128 86 chr4 44801121 44801393 -110828727 + L1M3 LINE L1 3597 3893 -2247 5 926 234 270 189 0 chr4 44801393 44801467 -110828653 - PB1D10 SINE Alu -6 111 24 5 926 2436 266 128 86 chr4 44801467 44801970 -110828150 + L1M3 LINE L1 3894 4444 -1696 5 926 608 306 25 13 chr4 44801970 44802129 -110827991 - RSINE1 SINE B4 -2 163 3 5 926 2436 266 128 86 chr4 44802129 44802180 -110827940 + L1M3 LINE L1 4445 4487 -1653 5 926 210 128 0 0 chr4 44802180 44802219 -110827901 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 926 2436 263 117 63 chr4 44802219 44803304 -110826816 + L1M3 LINE L1 4488 5681 -631 5 926 264 271 23 23 chr4 44804661 44804748 -110825372 + ORR1E LTR MaLR 1 87 -272 5 926 400 280 51 36 chr4 44804989 44805126 -110824994 - MTEa LTR MaLR -240 139 1 5 926 216 279 60 48 chr4 44805650 44805733 -110824387 + B4A SINE B4 9 92 -200 5 926 553 229 68 8 chr4 44805791 44805923 -110824197 - B1F SINE Alu -2 147 8 5 926 445 256 154 0 chr4 44806197 44806314 -110823806 + B3A SINE B2 6 140 -58 5 926 425 287 148 33 chr4 44806520 44806851 -110823269 - L1MD LINE L1 -1828 4318 3950 5 926 395 326 20 0 chr4 44807069 44807167 -110822953 - PB1D7 SINE Alu -10 110 11 5 926 180 312 208 0 chr4 44807573 44807669 -110822451 + MIRb SINE MIR 38 153 -115 5 926 561 218 86 38 chr4 44807688 44807874 -110822246 - B2_Mm2 SINE B2 0 195 1 5 926 21 82 0 0 chr4 44807990 44808039 -110822081 + AT_rich Low_complexity Low_complexity 1 49 0 5 926 759 159 23 0 chr4 44808230 44808362 -110821758 + B1_Mur3 SINE Alu 1 135 -14 5 926 579 83 73 0 chr4 44808698 44808794 -110821326 + Lx2 LINE L1 6895 6997 0 5 926 1033 275 154 14 chr4 44809251 44809763 -110820357 - L1MD1 LINE L1 -141 6101 5518 5 926 335 298 0 109 chr4 44810252 44810380 -110819740 + PB1D10 SINE Alu 4 117 0 5 926 713 309 104 15 chr4 44810386 44810646 -110819474 + B4A SINE B4 3 285 -7 5 926 1011 279 81 21 chr4 44810778 44811196 -110818924 + L1MC3 LINE L1 7271 7713 -72 5 926 475 262 103 67 chr4 44811270 44811540 -110818580 + MLT1A1 LTR MaLR 66 408 0 5 926 786 89 0 0 chr4 44812291 44812403 -110817717 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 5 926 24 32 0 0 chr4 44812605 44812636 -110817484 + AT_rich Low_complexity Low_complexity 1 31 0 5 926 242 279 0 79 chr4 44813473 44813574 -110816546 + L2a LINE L2 3333 3425 -1 5 926 399 41 0 0 chr4 44814083 44814132 -110815988 + (TAA)n Simple_repeat Simple_repeat 2 50 0 5 926 236 77 0 25 chr4 44814520 44814560 -110815560 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5 926 260 253 0 155 chr4 44814564 44814584 -110815536 + ID_B1 SINE B4 137 221 -1 5 926 389 210 123 0 chr4 44814584 44814665 -110815455 + PB1 SINE Alu 35 125 -2 5 926 217 129 56 14 chr4 44814991 44815062 -110815058 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 926 1018 246 76 5 chr4 44815244 44815635 -110814485 + L1MB7 LINE L1 5700 6119 -59 5 926 322 342 62 50 chr4 44816595 44816755 -110813365 - RSINE1 SINE B4 0 165 4 5 926 211 328 0 15 chr4 44817003 44817068 -110813052 - MIR SINE MIR -181 81 18 5 926 21 36 0 0 chr4 44817425 44817453 -110812667 + AT_rich Low_complexity Low_complexity 1 28 0 5 926 207 0 0 0 chr4 44817626 44817649 -110812471 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 5 926 273 119 0 0 chr4 44818489 44818531 -110811589 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 926 234 91 0 0 chr4 44818531 44818563 -110811557 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 926 386 289 125 0 chr4 44819047 44819175 -110810945 + RSINE1 SINE B4 3 146 -19 5 926 213 204 0 0 chr4 44819186 44819230 -110810890 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 5 926 432 91 45 0 chr4 44819261 44819327 -110810793 + B2_Mm2 SINE B2 118 186 -9 5 926 404 293 57 7 chr4 44819464 44819605 -110810515 - L1MD2 LINE L1 -6227 320 173 5 926 519 250 0 0 chr4 44819943 44820055 -110810065 + PB1D7 SINE Alu 1 112 -8 5 926 299 130 0 18 chr4 44820215 44820270 -110809850 + (TCC)n Simple_repeat Simple_repeat 2 55 0 5 926 306 0 0 0 chr4 44820478 44820512 -110809608 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 926 548 266 148 11 chr4 44822458 44822735 -110807385 - L1MB5 LINE L1 -240 5934 5620 5 926 243 114 0 0 chr4 44823452 44823496 -110806624 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 926 249 278 82 72 chr4 44823639 44823736 -110806384 - B4 SINE B4 -190 102 5 5 926 25 0 0 0 chr4 44823858 44823883 -110806237 + AT_rich Low_complexity Low_complexity 1 25 0 5 926 240 277 34 67 chr4 44824104 44824193 -110805927 + B1F SINE Alu 3 88 -61 5 926 22 70 0 0 chr4 44826170 44826213 -110803907 + AT_rich Low_complexity Low_complexity 1 43 0 6 927 411 303 8 92 chr4 44827821 44827941 -110802179 - RSINE1 SINE B4 0 165 56 6 927 311 280 119 15 chr4 44828033 44828167 -110801953 + B1F SINE Alu 2 149 0 6 927 1839 206 71 5 chr4 44829343 44829767 -110800353 + Lx9 LINE L1 6958 7409 -235 6 927 196 331 59 86 chr4 44830491 44830643 -110799477 + MIRb SINE MIR 19 166 -102 6 927 1065 201 181 36 chr4 44831053 44831384 -110798736 + MTE2b LTR MaLR 1 379 0 6 927 460 227 155 8 chr4 44831825 44831954 -110798166 - L1MCa LINE L1 -3621 2700 2553 6 927 1797 291 120 38 chr4 44831939 44833102 -110797018 - L1MCa LINE L1 -5138 1370 113 6 927 502 235 3 18 chr4 44833108 44833230 -110796890 - B1_Mm SINE Alu -19 128 5 6 927 255 289 29 62 chr4 44833323 44833436 -110796684 - L1MEb LINE L1 -5321 749 642 6 927 2776 158 190 34 chr4 44833436 44834058 -110796062 + RMER6D LTR ERVK 2 720 0 6 927 255 289 29 62 chr4 44834058 44834154 -110795966 - L1MEb LINE L1 -5429 641 547 6 927 1323 92 16 0 chr4 44834286 44834471 -110795649 + B2_Mm2 SINE B2 2 189 -6 6 927 282 293 98 0 chr4 44834809 44834891 -110795229 + PB1D10 SINE Alu 2 91 -26 6 927 1087 76 7 0 chr4 44835020 44835165 -110794955 - B1_Mus2 SINE Alu -1 146 1 6 927 24 0 0 0 chr4 44835194 44835218 -110794902 + AT_rich Low_complexity Low_complexity 1 24 0 6 927 3306 35 5 2 chr4 44835932 44836327 -110793793 + MTA_Mm LTR MaLR 1 396 0 6 927 350 326 7 35 chr4 44836328 44836471 -110793649 - B1F1 SINE Alu -9 140 2 6 927 234 0 0 0 chr4 44836932 44836958 -110793162 + (T)n Simple_repeat Simple_repeat 1 26 0 6 927 600 84 0 0 chr4 44837245 44837328 -110792792 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 927 25 31 0 0 chr4 44838415 44838447 -110791673 + AT_rich Low_complexity Low_complexity 1 32 0 6 927 361 290 196 0 chr4 44838454 44838592 -110791528 - RSINE1 SINE B4 0 165 1 6 927 256 284 0 15 chr4 44838807 44838875 -110791245 + MER20 DNA MER1_type 49 115 -104 6 927 345 316 50 17 chr4 44839054 44839070 -110791050 + B4A SINE B4 71 193 -99 6 927 541 223 10 0 chr4 44839070 44839173 -110790947 + B1_Mur2 SINE Alu 1 104 -45 6 927 231 287 0 121 chr4 44839091 44839190 -110790930 + MT2B LTR ERVL 187 273 -328 6 927 8124 32 14 1 chr4 44840016 44841270 -110788850 - L1Md_F3 LINE L1 -14 6570 5293 6 927 252 59 0 0 chr4 44841475 44841509 -110788611 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 6 927 282 106 0 0 chr4 44842176 44842223 -110787897 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 927 559 57 0 0 chr4 44844801 44844887 -110785233 - B1_Mus2 SINE Alu 0 150 65 6 927 333 0 0 0 chr4 44844923 44844960 -110785160 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 927 187 31 30 30 chr4 44845021 44845054 -110785066 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 6 927 1189 48 0 0 chr4 44845091 44845238 -110784882 + B1_Mm SINE Alu 1 147 0 6 927 207 133 0 0 chr4 44845246 44845291 -110784829 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 927 582 247 58 11 chr4 44845796 44845983 -110784137 + B3A SINE B2 6 190 -5 6 927 305 273 141 7 chr4 44846614 44846833 -110783287 + L1MC LINE L1 5186 5435 -744 6 927 23 33 0 0 chr4 44847073 44847103 -110783017 + AT_rich Low_complexity Low_complexity 1 30 0 6 927 665 255 18 12 chr4 44847122 44847285 -110782835 - RSINE1 SINE B4 0 165 2 6 927 1171 54 0 20 chr4 44847839 44847989 -110782131 - B1_Mus1 SINE Alu 0 148 2 6 927 374 275 11 42 chr4 44847994 44848089 -110782031 - B4 SINE B4 -69 96 4 6 927 1194 74 18 12 chr4 44848809 44848974 -110781146 + B2_Mm2 SINE B2 2 167 -28 6 927 210 167 0 23 chr4 44849301 44849344 -110780776 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 927 533 138 11 0 chr4 44849452 44849546 -110780574 + (TCCC)n Simple_repeat Simple_repeat 2 96 0 6 927 313 333 123 62 chr4 44849947 44850142 -110779978 - MLT1K LTR MaLR -62 533 327 6 927 918 235 67 78 chr4 44850566 44850848 -110779272 + B4 SINE B4 1 279 -13 6 927 23 33 0 0 chr4 44850972 44851002 -110779118 + AT_rich Low_complexity Low_complexity 1 30 0 6 927 183 80 0 0 chr4 44851046 44851071 -110779049 + (C)n Simple_repeat Simple_repeat 1 25 0 6 927 252 0 0 0 chr4 44851969 44851997 -110778123 + (CCTTG)n Simple_repeat Simple_repeat 4 31 0 6 927 21 36 0 0 chr4 44853506 44853534 -110776586 + AT_rich Low_complexity Low_complexity 1 28 0 6 927 21 0 0 0 chr4 44854939 44854960 -110775160 + AT_rich Low_complexity Low_complexity 1 21 0 6 927 33 25 0 0 chr4 44855110 44855150 -110774970 + AT_rich Low_complexity Low_complexity 1 40 0 6 927 357 82 0 0 chr4 44855381 44855430 -110774690 + (TATG)n Simple_repeat Simple_repeat 1 49 0 6 927 258 32 0 0 chr4 44857511 44857542 -110772578 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 927 405 0 0 0 chr4 44858950 44858995 -110771125 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 927 212 318 172 37 chr4 44859554 44859688 -110770432 - L2c LINE L2 -82 3305 3154 6 927 627 233 15 15 chr4 44860521 44860652 -110769468 + B1F SINE Alu 13 143 -6 6 927 252 174 161 11 chr4 44860836 44860923 -110769197 - L1MA7 LINE L1 -111 6180 6081 6 927 1663 165 3 55 chr4 44862881 44863228 -110766892 + RMER10B LTR ERVL 1 329 -69 6 927 226 133 48 32 chr4 44863402 44863464 -110766656 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 6 927 863 227 54 5 chr4 44863639 44863677 -110766443 - B3 SINE B2 0 216 175 6 927 480 77 0 0 chr4 44863677 44863742 -110766378 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 927 863 227 54 5 chr4 44863742 44863907 -110766213 - B3 SINE B2 -42 174 4 6 927 25 31 0 0 chr4 44864523 44864555 -110765565 + AT_rich Low_complexity Low_complexity 1 32 0 6 927 22 35 0 0 chr4 44866091 44866120 -110764000 + AT_rich Low_complexity Low_complexity 1 29 0 6 927 646 225 35 7 chr4 44866595 44866738 -110763382 - B1_Mur2 SINE Alu -2 147 1 6 927 23 54 0 0 chr4 44866798 44866835 -110763285 + AT_rich Low_complexity Low_complexity 1 37 0 6 927 263 216 157 11 chr4 44867940 44868029 -110762091 + L1MA6 LINE L1 6134 6235 -65 6 927 947 183 130 5 chr4 44868149 44868341 -110761779 - B3 SINE B2 0 216 1 6 927 285 266 43 0 chr4 44868390 44868484 -110761636 + MER45A DNA Tip100 68 165 -13 6 927 4374 8 0 0 chr4 44869163 44869645 -110760475 - LTRIS_Mm LTR ERV1 0 482 1 6 927 2760 228 121 11 chr4 44869767 44870464 -110759656 - Lx8 LINE L1 -289 7184 6412 6 927 997 76 0 15 chr4 44870464 44870598 -110759522 - B1_Mus2 SINE Alu -15 132 1 6 927 903 249 14 9 chr4 44870767 44870982 -110759138 - B3 SINE B2 0 216 1 6 927 435 19 0 0 chr4 44871007 44871059 -110759061 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 927 204 40 0 0 chr4 44871059 44871084 -110759036 + (GGA)n Simple_repeat Simple_repeat 3 27 0 6 927 546 200 173 0 chr4 44871088 44871198 -110758922 - B3A SINE B2 -67 131 3 6 927 1258 27 0 0 chr4 44871230 44871377 -110758743 - B1_Mus2 SINE Alu 0 147 1 6 927 440 332 83 26 chr4 44871630 44871859 -110758261 + Charlie1a DNA MER1_type 2 243 -1212 6 927 567 285 21 0 chr4 44871942 44872086 -110758034 + ID_B1 SINE B4 77 223 -1 6 927 232 246 108 0 chr4 44872104 44872169 -110757951 + Charlie1a DNA MER1_type 308 379 -1076 6 927 424 167 32 32 chr4 44872466 44872559 -110757561 + B1_Mur4 SINE Alu 58 150 0 6 927 540 249 123 9 chr4 44872563 44872774 -110757346 - MER45R DNA Tip100 -191 1390 1156 6 927 206 128 43 0 chr4 44872792 44872839 -110757281 + CT-rich Low_complexity Low_complexity 4 52 0 6 927 675 267 63 21 chr4 44872845 44873036 -110757084 - B3 SINE B2 -15 201 3 6 927 691 274 117 23 chr4 44873055 44873406 -110756714 - MER45R DNA Tip100 -646 935 552 6 927 424 328 41 31 chr4 44873632 44873827 -110756293 - MER45B DNA Tip100 -843 197 1 6 927 1553 53 0 0 chr4 44874758 44874945 -110755175 + B2_Mm1t SINE B2 2 188 -5 6 927 215 241 84 48 chr4 44875200 44875283 -110754837 + B1_Mur3 SINE Alu 64 149 0 6 927 327 224 0 0 chr4 44876268 44876344 -110753776 + CT-rich Low_complexity Low_complexity 2 77 0 6 927 1125 88 0 0 chr4 44876345 44876493 -110753627 - B1_Mus1 SINE Alu 0 148 1 6 927 234 0 0 0 chr4 44878132 44878158 -110751962 + (T)n Simple_repeat Simple_repeat 1 26 0 6 927 1205 41 0 0 chr4 44878160 44878305 -110751815 - B1_Mus2 SINE Alu -1 146 2 6 927 189 390 0 57 chr4 44879676 44879782 -110750338 - L2b LINE L2 -242 3133 3034 6 927 974 144 37 37 chr4 44879907 44880095 -110750025 - B2_Mm2 SINE B2 -6 189 2 6 927 233 323 0 0 chr4 44880595 44880657 -110749463 + Charlie5 DNA MER1_type 1 62 -2562 6 927 266 182 114 0 chr4 44880696 44880784 -110749336 + Charlie5 DNA MER1_type 2428 2525 -99 6 927 3751 7 121 0 chr4 44880815 44881255 -110748865 - MT2_Mm LTR ERVL 0 493 1 6 927 314 0 0 0 chr4 44881255 44881293 -110748827 - MERVL-int LTR ERVL 0 5485 5448 6 927 392 167 46 35 chr4 44881293 44881380 -110748740 - ORR1A3-int LTR MaLR -1323 640 553 6 927 7583 28 0 0 chr4 44881384 44882257 -110747863 - MERVL-int LTR ERVL -130 5355 4483 6 927 747 54 0 19 chr4 44882257 44882380 -110747740 - MT2_Mm LTR ERVL -486 115 1 6 927 396 0 0 0 chr4 44882380 44882424 -110747696 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 927 696 259 25 45 chr4 44882475 44882673 -110747447 - B4A SINE B4 -29 263 70 6 927 7987 48 14 11 chr4 44882679 44884346 -110745774 - L1Md_F2 LINE L1 -12 6570 4892 6 927 320 300 0 22 chr4 44884347 44884439 -110745681 - B4A SINE B4 -202 90 1 6 927 2008 152 51 46 chr4 44884533 44884905 -110745215 + ORR1C1 LTR MaLR 5 378 0 6 927 27 0 0 0 chr4 44885875 44885902 -110744218 + AT_rich Low_complexity Low_complexity 1 27 0 6 927 195 42 0 0 chr4 44886242 44886266 -110743854 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 6 927 1196 28 14 0 chr4 44886266 44886411 -110743709 - B1_Mus2 SINE Alu 0 147 1 6 927 567 313 56 9 chr4 44886898 44887111 -110743009 - ID_B1 SINE B4 0 224 2 7 927 381 43 0 0 chr4 44887118 44887165 -110742955 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 927 446 192 14 0 chr4 44887209 44887282 -110742838 - RSINE1 SINE B4 -89 76 3 7 927 198 0 0 0 chr4 44887905 44887927 -110742193 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 927 447 299 189 68 chr4 44887976 44888166 -110741954 - B4A SINE B4 -74 218 6 7 927 766 325 24 45 chr4 44888345 44888635 -110741485 - B4A SINE B4 -7 285 2 7 927 478 292 36 3 chr4 44888870 44889080 -110741040 - L1M5 LINE L1 -628 5612 5398 7 927 411 342 111 0 chr4 44889502 44889683 -110740437 + MIRb SINE MIR 60 260 -8 7 927 343 389 16 53 chr4 44890436 44890626 -110739494 + L1MEf LINE L1 137 319 -5775 7 927 684 298 112 26 chr4 44890709 44891216 -110738904 + L1MEf LINE L1 571 1121 -5079 7 927 933 243 51 0 chr4 44891885 44892140 -110737980 + L1MA4A LINE L1 5658 5925 -378 7 927 23 0 0 0 chr4 44892712 44892735 -110737385 + AT_rich Low_complexity Low_complexity 1 23 0 7 927 252 0 0 0 chr4 44892852 44892880 -110737240 + (T)n Simple_repeat Simple_repeat 1 28 0 7 927 28 0 0 0 chr4 44894144 44894172 -110735948 + AT_rich Low_complexity Low_complexity 1 28 0 7 927 699 200 16 0 chr4 44895585 44895710 -110734410 - B1_Mur4 SINE Alu -23 127 1 7 927 343 325 55 31 chr4 44895604 44895731 -110734389 - B4 SINE B4 -98 194 65 7 927 295 350 112 0 chr4 44895893 44896053 -110734067 + L2a LINE L2 1875 2052 -1367 7 927 742 339 199 12 chr4 44896115 44896834 -110733286 + L2a LINE L2 2229 3081 -338 7 927 409 362 32 54 chr4 44896851 44897131 -110732989 + L2a LINE L2 3153 3426 0 7 927 1580 31 5 0 chr4 44897850 44898044 -110732076 - L1Md_A LINE L1 -1 6581 6387 7 927 587 287 19 24 chr4 44898377 44898540 -110731580 - ID_B1 SINE B4 -46 246 79 7 927 1581 32 5 0 chr4 44899477 44899662 -110730458 + B2_Mm1a SINE B2 1 186 -7 7 927 730 247 40 40 chr4 44900026 44900224 -110729896 - B3A SINE B2 0 198 1 7 927 270 0 0 0 chr4 44900938 44900968 -110729152 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 927 249 33 0 0 chr4 44900968 44900997 -110729123 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 7 927 764 114 46 54 chr4 44901000 44901130 -110728990 - B1_Mur4 SINE Alu -16 134 6 7 927 391 223 92 59 chr4 44901024 44901143 -110728977 - B4 SINE B4 -88 204 82 7 927 299 219 62 0 chr4 44901176 44901240 -110728880 + B1F1 SINE Alu 14 81 -68 7 927 276 180 0 39 chr4 44901240 44901292 -110728828 + MTE2b LTR MaLR 1 50 -329 7 927 1218 54 0 0 chr4 44901712 44901859 -110728261 - B1_Mus2 SINE Alu 0 147 1 7 927 296 243 82 40 chr4 44901943 44902043 -110728077 + L1M5 LINE L1 3611 3713 -2433 7 927 552 288 108 39 chr4 44902043 44902375 -110727745 - ORR1E LTR MaLR 0 359 5 7 927 282 301 148 21 chr4 44902375 44902634 -110727486 + L1M5 LINE L1 3714 4001 -2145 7 927 554 271 14 36 chr4 44902843 44902981 -110727139 + RSINE1 SINE B4 1 135 -30 7 927 532 233 124 21 chr4 44903007 44903383 -110726737 + L1M5 LINE L1 4181 4703 -1443 7 927 225 0 0 0 chr4 44903424 44903449 -110726671 + (GGTTG)n Simple_repeat Simple_repeat 5 29 0 7 927 577 205 17 8 chr4 44903449 44903556 -110726564 - PB1D9 SINE Alu -10 110 2 7 927 21 36 0 0 chr4 44903560 44903588 -110726532 + AT_rich Low_complexity Low_complexity 1 28 0 7 927 931 232 48 64 chr4 44903596 44903891 -110726229 + B4A SINE B4 1 290 -2 7 927 464 266 0 24 chr4 44904888 44905015 -110725105 + RSINE1 SINE B4 2 125 -40 7 927 463 262 43 75 chr4 44905543 44905704 -110724416 - MIRc SINE MIR -38 230 75 7 927 452 244 36 36 chr4 44905725 44905865 -110724255 + B4A SINE B4 11 150 -142 7 927 684 267 96 6 chr4 44906056 44906233 -110723887 + B3A SINE B2 2 194 -4 7 927 22 0 0 0 chr4 44906827 44906849 -110723271 + AT_rich Low_complexity Low_complexity 1 22 0 7 927 663 181 9 0 chr4 44906989 44907105 -110723015 - PB1D10 SINE Alu 0 117 1 7 927 232 356 57 36 chr4 44908017 44908157 -110721963 + MIR3 SINE MIR 24 166 -42 7 927 717 201 58 0 chr4 44908965 44909104 -110721016 - B1_Mur3 SINE Alu -2 147 1 7 927 612 276 46 7 chr4 44909654 44909807 -110720313 + RSINE1 SINE B4 2 160 -5 7 927 321 250 75 0 chr4 44910159 44910239 -110719881 - PB1D10 SINE Alu -7 110 25 7 927 392 0 0 20 chr4 44910622 44910671 -110719449 + (GTTTG)n Simple_repeat Simple_repeat 4 51 0 7 927 183 80 0 0 chr4 44910686 44910711 -110719409 + (TGG)n Simple_repeat Simple_repeat 1 25 0 7 927 1308 103 22 0 chr4 44911136 44911321 -110718799 - B2_Mm2 SINE B2 -6 189 1 7 927 500 287 105 0 chr4 44911437 44911580 -110718540 + RSINE1 SINE B4 3 160 -5 7 927 23 33 0 0 chr4 44911614 44911644 -110718476 + AT_rich Low_complexity Low_complexity 1 30 0 7 927 369 0 0 0 chr4 44911664 44911705 -110718415 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 7 927 4646 39 9 0 chr4 44911778 44912341 -110717779 - L1Md_F2 LINE L1 -1 6581 6014 7 927 252 342 0 0 chr4 44912514 44912593 -110717527 - RSINE1 SINE B4 -9 156 78 7 927 406 180 65 33 chr4 44912726 44912818 -110717302 - MTD LTR MaLR -324 95 1 7 927 444 314 16 8 chr4 44912819 44912941 -110717179 - B4A SINE B4 -168 124 2 7 927 1202 48 0 0 chr4 44913825 44913972 -110716148 + B1_Mm SINE Alu 1 147 0 7 927 468 245 94 0 chr4 44914213 44914319 -110715801 + PB1 SINE Alu 1 116 -11 7 927 225 243 51 63 chr4 44914299 44914378 -110715742 + ZP3AR Satellite Satellite 5 82 -130 7 927 411 282 39 6 chr4 44914591 44914769 -110715351 - L1M5 LINE L1 -706 5473 5290 7 927 233 244 72 48 chr4 44914784 44914909 -110715211 - L1MD LINE L1 -1601 4545 4418 7 927 22 0 0 0 chr4 44914977 44914999 -110715121 + AT_rich Low_complexity Low_complexity 1 22 0 7 927 891 254 38 50 chr4 44915104 44915344 -110714776 - B4A SINE B4 0 292 56 7 927 24 32 0 0 chr4 44915633 44915664 -110714456 + AT_rich Low_complexity Low_complexity 1 31 0 7 927 608 278 32 26 chr4 44915809 44915964 -110714156 + RSINE1 SINE B4 4 159 -6 7 927 503 200 31 31 chr4 44915997 44916126 -110713994 + B3A SINE B2 1 129 -69 7 927 1263 96 16 5 chr4 44916186 44916375 -110713745 + B2_Mm1t SINE B2 1 191 -2 7 927 318 227 76 7 chr4 44916388 44916480 -110713640 + PB1D10 SINE Alu 4 97 -52 7 927 414 304 114 25 chr4 44917043 44917263 -110712857 - MIR SINE MIR -4 258 26 7 927 22 35 0 0 chr4 44924929 44924958 -110705162 + AT_rich Low_complexity Low_complexity 1 29 0 7 927 258 260 52 0 chr4 44925662 44925739 -110704381 - ID4_ SINE ID -2 81 1 7 927 21 0 0 0 chr4 44926083 44926104 -110704016 + AT_rich Low_complexity Low_complexity 1 21 0 7 927 195 184 0 0 chr4 44927823 44927861 -110702259 + (CATG)n Simple_repeat Simple_repeat 2 39 0 7 927 294 198 17 0 chr4 44928044 44928110 -110702010 - B1F SINE Alu -82 67 1 7 927 359 306 47 0 chr4 44928292 44928377 -110701743 - PB1D7 SINE Alu -31 89 1 7 927 230 324 77 82 chr4 44928377 44928486 -110701634 - MT2B LTR ERVL -356 244 52 7 927 878 124 27 14 chr4 44929034 44929181 -110700939 - B1F1 SINE Alu 0 149 1 7 927 769 199 130 0 chr4 44929844 44930005 -110700115 + B3 SINE B2 29 210 -6 7 927 285 232 0 0 chr4 44932971 44933040 -110697080 + (TATG)n Simple_repeat Simple_repeat 4 72 0 7 927 303 28 0 0 chr4 44934258 44934294 -110695826 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 927 832 203 0 0 chr4 44934520 44934658 -110695462 + B1_Mur2 SINE Alu 3 140 -9 7 927 192 331 153 30 chr4 44935783 44936045 -110694075 - L2 LINE L2 -471 2948 2655 7 927 653 203 86 1 chr4 44937012 44937157 -110692963 - ID_B1 SINE B4 -46 246 86 7 927 273 272 8 109 chr4 44937053 44937181 -110692939 - MT2B LTR ERVL -338 263 149 7 927 262 307 120 68 chr4 44937519 44937900 -110692220 + MTE2a LTR MaLR 1 374 -5 7 927 270 0 0 0 chr4 44938705 44938735 -110691385 + (CACTC)n Simple_repeat Simple_repeat 1 30 0 7 927 180 324 27 40 chr4 44940371 44940445 -110689675 + L3 LINE CR1 826 898 -3591 7 927 225 0 0 0 chr4 44941388 44941413 -110688707 + (G)n Simple_repeat Simple_repeat 1 25 0 7 927 195 42 0 0 chr4 44942229 44942253 -110687867 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 7 927 690 77 0 0 chr4 44942261 44942352 -110687768 - B2_Mm2 SINE B2 -104 91 1 7 927 595 228 164 0 chr4 44942687 44942858 -110687262 + B3 SINE B2 17 215 -1 7 927 22 70 0 0 chr4 44943706 44943749 -110686371 + AT_rich Low_complexity Low_complexity 1 43 0 7 927 292 197 28 14 chr4 44946115 44946187 -110683933 + L1MEc LINE L1 735 807 -5593 7 927 959 186 21 11 chr4 44946612 44946802 -110683318 + B3 SINE B2 17 208 -8 7 927 254 352 18 9 chr4 44946936 44947045 -110683075 + PB1D10 SINE Alu 3 112 -5 7 927 383 227 17 13 chr4 44947317 44947407 -110682713 - B3 SINE B2 -66 132 35 7 927 800 186 11 17 chr4 44947424 44947599 -110682521 + B2_Mm2 SINE B2 1 174 -21 7 927 21 71 0 0 chr4 44947605 44947647 -110682473 + AT_rich Low_complexity Low_complexity 1 42 0 7 927 536 275 65 18 chr4 44947970 44948140 -110681980 + ID_B1 SINE B4 2 179 -45 7 927 442 206 10 30 chr4 44948052 44948152 -110681968 + PB1D10 SINE Alu 13 110 -7 7 927 1966 161 70 10 chr4 44948240 44948628 -110681492 - MTC LTR MaLR -8 413 3 7 927 534 31 0 0 chr4 44948759 44948823 -110681297 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 927 969 116 0 20 chr4 44949776 44949926 -110680194 - B1_Mus1 SINE Alu 0 148 2 8 927 1014 97 7 0 chr4 44950051 44950195 -110679925 + B1_Mus1 SINE Alu 4 148 0 8 927 198 128 0 0 chr4 44950196 44950235 -110679885 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 8 927 376 276 87 27 chr4 44950310 44950459 -110679661 + RLTR14 LTR ERV1 225 382 0 8 927 843 284 120 34 chr4 44955048 44955398 -110674722 + MLT1B LTR MaLR 1 380 -10 8 927 377 240 86 0 chr4 44955807 44955920 -110674200 + L1ME3 LINE L1 5932 6061 -103 8 927 529 27 0 26 chr4 44956954 44957031 -110673089 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 8 927 770 161 0 16 chr4 44957032 44957158 -110672962 - B1_Mus2 SINE Alu -15 132 9 8 927 353 336 30 0 chr4 44957051 44957182 -110672938 - B4 SINE B4 -88 204 70 8 927 247 171 28 14 chr4 44957299 44957370 -110672750 + G-rich Low_complexity Low_complexity 5 76 0 8 928 204 264 0 62 chr4 44958183 44958233 -110671887 + A-rich Low_complexity Low_complexity 4 51 0 8 928 1239 27 0 0 chr4 44958233 44958379 -110671741 + B1_Mus2 SINE Alu 1 146 -1 8 928 241 221 0 31 chr4 44958379 44958425 -110671695 + A-rich Low_complexity Low_complexity 1 44 0 8 928 531 283 15 80 chr4 44958884 44958986 -110671134 - B3A SINE B2 -3 195 105 8 928 1351 50 0 16 chr4 44958986 44959168 -110670952 - B2_Mm2 SINE B2 -14 181 3 8 928 531 283 15 80 chr4 44959168 44959265 -110670855 - B3A SINE B2 -94 104 9 8 928 3378 10 8 0 chr4 44959668 44960061 -110670059 + MTA_Mm LTR MaLR 1 396 0 8 928 400 86 76 30 chr4 44960221 44960353 -110669767 + C-rich Low_complexity Low_complexity 6 143 0 8 928 268 271 81 23 chr4 44960539 44960626 -110669494 + PB1D7 SINE Alu 19 110 -10 8 928 665 216 0 21 chr4 44961307 44961449 -110668671 + ID_B1 SINE B4 85 223 -1 8 928 299 208 52 0 chr4 44961465 44961542 -110668578 + ID4 SINE ID 1 81 -2 8 928 227 250 0 0 chr4 44961542 44961586 -110668534 + G-rich Low_complexity Low_complexity 2 45 0 8 928 241 284 26 44 chr4 44963189 44963303 -110666817 - YREP_Mm Unknown Unknown -1484 328 217 8 928 609 220 8 0 chr4 44963208 44963340 -110666780 + ID_B1 SINE B4 88 220 -4 8 928 269 256 12 25 chr4 44964091 44964171 -110665949 + MIR3 SINE MIR 109 187 -21 8 928 2236 89 19 0 chr4 44964241 44964554 -110665566 - ORR1A2 LTR MaLR -8 319 1 8 928 695 247 221 10 chr4 44964619 44964909 -110665211 + Lx8 LINE L1 6808 7158 -315 8 928 1297 216 94 3 chr4 44964924 44965263 -110664857 + ORR1D1 LTR MaLR 5 374 0 8 928 437 301 125 0 chr4 44965263 44965479 -110664641 + Lx8 LINE L1 7167 7409 -64 8 928 972 124 6 17 chr4 44965484 44965664 -110664456 + (GGA)n Simple_repeat Simple_repeat 3 180 0 8 928 464 285 108 6 chr4 44965868 44966034 -110664086 + Charlie14a DNA MER1_type 267 449 -715 8 928 215 228 158 0 chr4 44966759 44966816 -110663304 - ID4_ SINE ID -2 81 16 8 928 699 82 0 0 chr4 44967002 44967099 -110663021 - B1_Mus1 SINE Alu -47 101 5 8 928 412 202 202 0 chr4 44967458 44967587 -110662533 + B3A SINE B2 2 156 -42 8 928 390 21 0 0 chr4 44967588 44967635 -110662485 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 928 398 246 65 65 chr4 44967826 44967878 -110662242 - MER58B DNA MER1_type -127 214 164 8 928 955 118 14 0 chr4 44967878 44968022 -110662098 - B1_Mus1 SINE Alu 0 148 3 8 928 398 246 65 65 chr4 44968022 44968108 -110662012 - MER58B DNA MER1_type -178 163 76 8 928 254 180 16 0 chr4 44969128 44969189 -110660931 + CT-rich Low_complexity Low_complexity 3 64 0 8 928 1485 48 16 0 chr4 44969191 44969377 -110660743 - B2_Mm2 SINE B2 -2 193 5 8 928 1730 60 0 0 chr4 44970390 44970625 -110659495 - MTA_Mm-int LTR MaLR -863 235 1 8 928 3225 35 2 8 chr4 44970625 44971023 -110659097 - MTA_Mm LTR MaLR 0 396 1 8 928 611 52 35 0 chr4 44971023 44971118 -110659002 - B1_Mus1 SINE Alu -34 116 1 8 928 646 174 0 34 chr4 44971128 44971247 -110658873 - B1_Mur1 SINE Alu 0 149 35 8 928 1072 172 59 5 chr4 44971275 44971479 -110658641 - B3 SINE B2 0 216 2 8 928 411 328 15 0 chr4 44971479 44971610 -110658510 - ID_B1 SINE B4 -43 181 49 8 928 328 247 22 0 chr4 44971952 44972041 -110658079 - MIR SINE MIR -72 190 100 8 928 233 237 0 48 chr4 44972363 44972425 -110657695 - RMER20B LTR ERVK -502 125 67 8 928 877 91 15 0 chr4 44972424 44972556 -110657564 + B1_Mur3 SINE Alu 9 142 -7 8 928 714 189 7 45 chr4 44972704 44972859 -110657261 + B1_Mur2 SINE Alu 1 149 0 8 928 243 61 0 0 chr4 44972859 44972892 -110657228 + (CAAAAA)n Simple_repeat Simple_repeat 5 37 0 8 928 607 95 42 0 chr4 44973163 44973258 -110656862 - PB1D9 SINE Alu -4 116 18 8 928 317 267 112 47 chr4 44973177 44973346 -110656774 + YREP_Mm Unknown Unknown 223 402 -1410 8 928 604 293 16 105 chr4 44973358 44973606 -110656514 - MLT1B LTR MaLR 0 390 165 8 928 290 186 26 0 chr4 44973619 44973706 -110656414 - ID4 SINE ID -61 91 1 8 928 229 341 40 8 chr4 44973747 44973871 -110656249 - MLT1B LTR MaLR -246 128 1 8 928 232 135 19 19 chr4 44974198 44974251 -110655869 + (TAA)n Simple_repeat Simple_repeat 1 53 0 8 928 1395 58 26 0 chr4 44974844 44975033 -110655087 + B2_Mm2 SINE B2 1 194 -1 8 928 290 194 45 0 chr4 44975304 44975371 -110654749 + PB1D10 SINE Alu 48 117 0 8 928 266 274 160 0 chr4 44975897 44976072 -110654048 - HAL1 LINE L1 -938 1569 1367 8 928 580 281 68 48 chr4 44976918 44977124 -110652996 + MTD LTR MaLR 1 210 -209 8 928 1190 41 7 0 chr4 44977124 44977270 -110652850 + B1_Mm SINE Alu 1 147 0 8 928 806 201 47 0 chr4 44977299 44977468 -110652652 + B3 SINE B2 2 178 -38 8 928 324 70 0 0 chr4 44977479 44977522 -110652598 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 8 928 518 215 226 6 chr4 44977522 44977681 -110652439 + MTD LTR MaLR 187 380 -39 8 928 414 0 0 0 chr4 44977682 44977728 -110652392 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 8 928 241 290 156 18 chr4 44977749 44977858 -110652262 + RSINE1 SINE B4 40 163 -2 8 928 416 136 11 0 chr4 44977864 44977952 -110652168 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 928 414 0 0 0 chr4 44978613 44978659 -110651461 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 928 603 173 179 50 chr4 44978798 44979126 -110650994 + RMER17C LTR ERVK 1 389 -21 8 928 225 0 0 0 chr4 44979885 44979910 -110650210 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 928 207 125 0 0 chr4 44979933 44979973 -110650147 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 8 928 323 270 135 0 chr4 44979973 44980084 -110650036 - MIRb SINE MIR -22 246 121 8 928 264 194 90 0 chr4 44980450 44980517 -110649603 + MIRb SINE MIR 113 185 -83 8 928 192 298 95 0 chr4 44980738 44980822 -110649298 - L2 LINE L2 -658 2761 2670 8 928 560 177 9 9 chr4 44981945 44982059 -110648061 + B1_Mur4 SINE Alu 36 149 -1 8 928 184 194 0 0 chr4 44982511 44982547 -110647573 + MIRc SINE MIR 113 148 -120 8 928 438 206 18 18 chr4 44982552 44982661 -110647459 + PB1D10 SINE Alu 1 109 -8 8 928 238 276 53 0 chr4 44982677 44982753 -110647367 + ID4_ SINE ID 4 83 0 8 928 242 357 17 26 chr4 44983501 44983616 -110646504 + MIRb SINE MIR 100 213 -55 8 928 237 269 170 19 chr4 44984160 44984266 -110645854 + MER5A1 DNA MER1_type 1 122 -44 8 928 606 300 91 13 chr4 44984373 44984603 -110645517 + MER58B DNA MER1_type 94 341 0 8 928 563 258 8 8 chr4 44984776 44984909 -110645211 + B1F2 SINE Alu 9 141 -8 8 928 219 69 0 0 chr4 44984909 44984938 -110645182 + (TGG)n Simple_repeat Simple_repeat 1 29 0 8 928 271 297 0 21 chr4 44984985 44985078 -110645042 + PB1D10 SINE Alu 25 115 -2 8 928 272 280 128 11 chr4 44985097 44985191 -110644929 + PB1 SINE Alu 2 106 -21 8 928 605 228 16 0 chr4 44985111 44985238 -110644882 + ID_B1 SINE B4 96 224 0 8 928 1236 145 296 3 chr4 44985434 44985731 -110644389 - ORR1C2 LTR MaLR 0 384 1 8 928 327 279 71 60 chr4 44986847 44987030 -110643090 - MLT1E LTR MaLR -160 493 309 8 928 297 0 0 0 chr4 44987616 44987649 -110642471 + (A)n Simple_repeat Simple_repeat 1 33 0 8 928 263 268 153 10 chr4 44987740 44987838 -110642282 + PB1D10 SINE Alu 1 112 -5 8 928 1295 66 55 0 chr4 44987953 44988134 -110641986 - B2_Mm1a SINE B2 -2 191 1 8 928 518 291 133 0 chr4 44988314 44988510 -110641610 - ID_B1 SINE B4 -2 222 1 8 928 281 264 143 0 chr4 44988673 44988764 -110641356 + B1_Mur1 SINE Alu 40 143 -6 8 928 205 138 0 0 chr4 44988764 44988793 -110641327 + (CAG)n Simple_repeat Simple_repeat 1 29 0 8 928 815 148 0 34 chr4 44988876 44989014 -110641106 + B1_Mur4 SINE Alu 9 144 -6 8 928 198 0 0 0 chr4 44989014 44989036 -110641084 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 928 246 256 21 72 chr4 44989418 44989515 -110640605 + MLT1F LTR MaLR 448 539 -9 8 928 613 184 127 20 chr4 44989930 44990080 -110640040 - B3 SINE B2 -4 212 47 8 928 527 43 0 14 chr4 44990822 44990893 -110639227 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 8 928 189 0 0 0 chr4 44990893 44990913 -110639207 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8 928 1033 117 0 0 chr4 44990925 44991070 -110639050 - B1_Mur4 SINE Alu -4 146 2 8 928 1172 136 11 0 chr4 44991498 44991689 -110638431 - B2_Mm1t SINE B2 0 193 1 8 928 606 246 35 0 chr4 44991691 44991833 -110638287 - B1F SINE Alu 0 149 3 8 928 211 273 78 0 chr4 44992350 44992427 -110637693 + MIRc SINE MIR 68 150 -118 8 928 243 0 0 0 chr4 44992990 44993017 -110637103 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 928 266 287 138 0 chr4 44993242 44993329 -110636791 - B1F2 SINE Alu -50 99 1 9 928 264 250 134 25 chr4 44993335 44993454 -110636666 - MIR SINE MIR -43 219 88 9 928 191 365 79 21 chr4 44993542 44993682 -110636438 - MIRb SINE MIR -88 180 33 9 928 232 273 0 0 chr4 44994211 44994277 -110635843 + C-rich Low_complexity Low_complexity 5 70 0 9 928 736 151 0 23 chr4 44995156 44995285 -110634835 - B1_Mur3 SINE Alu 0 149 24 9 928 185 0 0 39 chr4 44999301 44999327 -110630793 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 928 263 347 99 7 chr4 44999488 44999639 -110630481 - B4 SINE B4 -127 165 1 9 928 771 244 46 79 chr4 44999639 44999876 -110630244 - B4A SINE B4 -62 230 2 9 928 332 280 4 0 chr4 44999886 44999974 -110630146 - B1F SINE Alu -6 114 25 9 928 479 214 58 10 chr4 45000744 45000848 -110629272 - PB1D10 SINE Alu -8 109 1 1 928 1068 73 0 14 chr4 45000994 45001120 -110629000 + B1_Mm SINE Alu 9 134 -13 2 928 354 23 0 0 chr4 45001120 45001163 -110628957 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 3 928 1068 73 0 14 chr4 45001163 45001175 -110628945 + B1_Mm SINE Alu 135 145 -2 2 928 189 290 190 0 chr4 45002433 45002533 -110627587 - MER5A DNA MER1_type -30 159 41 4 928 659 131 126 91 chr4 45008346 45008489 -110621631 + B1_Mus1 SINE Alu 1 148 0 5 928 412 360 6 6 chr4 45008512 45008677 -110621443 + RSINE1 SINE B4 1 165 0 6 928 1216 155 44 0 chr4 45009094 45009300 -110620820 + B3 SINE B2 2 216 0 7 928 798 169 158 32 chr4 45010658 45010848 -110619272 + B3 SINE B2 1 214 -2 8 928 822 211 100 18 chr4 45011000 45011195 -110618925 - B3 SINE B2 0 216 26 9 928 363 200 39 26 chr4 45011205 45011282 -110618838 + B1F1 SINE Alu 9 86 -63 1 928 240 246 32 16 chr4 45011282 45011344 -110618776 + GA-rich Low_complexity Low_complexity 3 65 0 1 928 217 261 0 0 chr4 45011592 45011638 -110618482 + RSINE1 SINE B4 89 134 -31 1 928 21 0 0 0 chr4 45011672 45011693 -110618427 + AT_rich Low_complexity Low_complexity 1 21 0 1 928 458 278 91 35 chr4 45011735 45011989 -110618131 + HAL1 LINE L1 1472 1739 -768 1 928 591 242 45 0 chr4 45012590 45012722 -110617398 + B3A SINE B2 2 139 -59 1 928 307 295 22 116 chr4 45013126 45013264 -110616856 + HAL1 LINE L1 2343 2467 -40 1 928 729 171 23 15 chr4 45013292 45013423 -110616697 + B1_Mur2 SINE Alu 17 148 -1 1 928 1196 68 0 0 chr4 45013440 45013587 -110616533 + B1_Mus1 SINE Alu 2 148 0 1 928 198 0 0 0 chr4 45013590 45013612 -110616508 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 928 836 129 43 7 chr4 45013865 45014023 -110616097 + B2_Mm2 SINE B2 1 170 -46 1 928 250 239 112 64 chr4 45013991 45014116 -110616004 + MLT1K LTR MaLR 281 411 -184 2 928 605 187 263 0 chr4 45014326 45014497 -110615623 - ID_B1 SINE B4 -7 217 2 2 928 350 361 93 17 chr4 45014741 45014913 -110615207 + MLT1K LTR MaLR 383 567 -28 2 928 798 243 23 37 chr4 45015217 45015431 -110614689 + B3 SINE B2 6 216 0 2 928 533 269 22 0 chr4 45015449 45015583 -110614537 + B1F1 SINE Alu 1 137 -12 2 928 623 289 41 26 chr4 45015755 45015950 -110614170 + B3A SINE B2 1 198 0 2 928 584 128 35 60 chr4 45016535 45016651 -110613469 - PB1D9 SINE Alu 0 120 8 2 928 353 263 69 20 chr4 45016576 45016677 -110613443 - B4 SINE B4 -123 169 64 2 928 746 186 42 29 chr4 45016798 45016973 -110613147 - B1_Mus1 SINE Alu 0 311 1 2 928 548 203 123 39 chr4 45016973 45017120 -110613000 - B4A SINE B4 -129 163 4 2 928 1118 51 0 0 chr4 45017417 45017555 -110612565 + B1_Mus1 SINE Alu 9 146 -2 2 928 559 252 111 13 chr4 45017549 45017702 -110612418 + B3 SINE B2 48 215 -1 3 928 643 236 43 7 chr4 45017718 45017859 -110612261 + B3 SINE B2 2 147 -69 3 928 552 172 21 0 chr4 45017863 45017956 -110612164 - B1_Mus2 SINE Alu -51 96 2 3 928 279 0 0 0 chr4 45018807 45018838 -110611282 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 928 292 262 34 45 chr4 45019358 45019446 -110610674 - Kanga1d DNA Tc2 0 609 523 3 928 220 203 29 59 chr4 45019444 45019512 -110610608 - B1F SINE Alu 0 149 84 3 928 791 187 246 6 chr4 45019593 45019760 -110610360 + B3 SINE B2 2 208 -8 3 928 2520 38 73 0 chr4 45019765 45020080 -110610040 - ORR1A1 LTR MaLR -8 338 1 3 928 14004 50 20 4 chr4 45020080 45021843 -110608277 - ORR1A1-int LTR MaLR 0 1792 1 3 928 2568 38 63 0 chr4 45021847 45022165 -110607955 - ORR1A1 LTR MaLR -8 338 1 3 928 1247 54 0 0 chr4 45022190 45022337 -110607783 - B1_Mus2 SINE Alu 0 147 1 3 928 625 229 73 87 chr4 45022557 45022833 -110607287 + RMER16 LTR ERVK 1 441 -92 3 928 762 144 189 0 chr4 45022851 45023004 -110607116 - B3 SINE B2 -30 186 5 4 928 29 28 0 0 chr4 45023474 45023510 -110606610 + AT_rich Low_complexity Low_complexity 1 36 0 4 928 23 0 0 0 chr4 45025042 45025065 -110605055 + GC_rich Low_complexity Low_complexity 1 23 0 4 928 187 355 31 62 chr4 45025639 45025735 -110604385 - L2 LINE L2 -3303 116 24 4 928 271 291 133 34 chr4 45026098 45026335 -110603785 - ORR1D1 LTR MaLR 0 374 115 4 928 1346 207 107 2 chr4 45026398 45026719 -110603401 - BGLII_B LTR ERVK -10 431 43 4 928 359 330 56 39 chr4 45026859 45026884 -110603236 + L1ME4a LINE L1 5930 5952 -172 4 928 680 221 26 40 chr4 45026884 45027035 -110603085 + B1_Mur1 SINE Alu 1 149 0 4 928 359 330 56 39 chr4 45027035 45027189 -110602931 + L1ME4a LINE L1 5953 6112 -12 4 928 210 237 0 38 chr4 45027264 45027286 -110602834 + T-rich Low_complexity Low_complexity 60 81 0 4 928 1188 55 7 7 chr4 45027286 45027433 -110602687 - B1_Mm SINE Alu 0 147 1 4 928 210 237 0 38 chr4 45027433 45027489 -110602631 + T-rich Low_complexity Low_complexity 6 59 0 5 928 319 253 13 0 chr4 45027986 45028065 -110602055 + B1_Mur1 SINE Alu 70 149 0 5 928 221 274 14 14 chr4 45028497 45028571 -110601549 + GA-rich Low_complexity Low_complexity 1 74 0 5 928 1167 43 35 0 chr4 45028875 45029016 -110601104 - B1_Mm SINE Alu -1 146 1 5 928 229 300 21 53 chr4 45029509 45029604 -110600516 + ID_B1 SINE B4 84 175 -49 5 928 292 125 0 20 chr4 45029690 45029739 -110600381 - B2_Mm2 SINE B2 -101 94 47 5 928 228 146 24 0 chr4 45029703 45029744 -110600376 - B4 SINE B4 -210 82 41 5 928 937 105 163 0 chr4 45029774 45029927 -110600193 - B2_Mm1t SINE B2 -14 179 2 5 928 433 239 109 0 chr4 45030187 45030279 -110599841 - RSINE1 SINE B4 -62 103 2 5 928 242 296 131 10 chr4 45030388 45030487 -110599633 + ID_B1 SINE B4 84 194 -30 5 928 22 0 0 0 chr4 45030583 45030605 -110599515 + AT_rich Low_complexity Low_complexity 1 22 0 6 928 229 259 185 0 chr4 45030855 45030909 -110599211 - PB1D7 SINE Alu -40 80 17 6 928 381 255 9 75 chr4 45031099 45031205 -110598915 + B1F2 SINE Alu 42 140 -9 6 928 794 161 7 21 chr4 45032413 45032553 -110597567 - B1_Mus2 SINE Alu -1 146 9 6 928 473 250 6 77 chr4 45032553 45032569 -110597551 - ID_B1 SINE B4 -2 222 78 6 928 543 195 81 8 chr4 45032692 45032816 -110597304 - B3 SINE B2 -8 208 76 6 928 198 71 0 0 chr4 45032830 45032858 -110597262 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 928 510 198 18 73 chr4 45032863 45032972 -110597148 - PB1D9 SINE Alu -17 103 1 6 928 239 204 0 0 chr4 45032976 45033020 -110597100 - MER20 DNA MER1_type -78 141 98 6 928 622 220 115 52 chr4 45033505 45033697 -110596423 + B3 SINE B2 2 205 -11 6 928 315 0 0 0 chr4 45033799 45033834 -110596286 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 928 1014 267 23 37 chr4 45033869 45034223 -110595897 - L1_Rod LINE L1 -138 5709 5361 7 928 659 117 9 31 chr4 45034241 45034359 -110595761 - B1_Mur3 SINE Alu -21 128 16 7 928 420 91 0 0 chr4 45034372 45034438 -110595682 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 928 352 243 116 9 chr4 45034438 45034539 -110595581 - RSINE1 SINE B4 -41 124 11 7 928 384 308 12 46 chr4 45034547 45034862 -110595258 - L1_Mur3 LINE L1 -869 5431 5105 7 928 460 314 129 35 chr4 45036223 45036424 -110593696 - ID_B1 SINE B4 -43 249 30 7 928 1364 76 11 16 chr4 45036515 45036702 -110593418 - B2_Mm1t SINE B2 -7 186 1 7 928 299 310 191 56 chr4 45036974 45037189 -110592931 - B4 SINE B4 -24 268 25 7 928 591 252 33 20 chr4 45037265 45037415 -110592705 - RSINE1 SINE B4 -11 154 3 7 928 472 250 95 23 chr4 45037427 45037614 -110592506 - B3A SINE B2 -7 209 19 8 928 1246 41 0 14 chr4 45037675 45037823 -110592297 - B1_Mm SINE Alu 0 147 2 8 928 194 320 165 16 chr4 45038167 45038294 -110591826 + MIRm SINE MIR 14 159 -117 8 928 1196 78 77 16 chr4 45038941 45039123 -110590997 - B2_Mm2 SINE B2 0 195 3 8 928 1406 60 27 5 chr4 45041484 45041668 -110588452 - B2_Mm2 SINE B2 -5 190 3 8 928 571 271 82 6 chr4 45041683 45041871 -110588249 - B3A SINE B2 -3 213 8 8 928 336 264 0 0 chr4 45041873 45041945 -110588175 - HAL1-3A_ME LINE L1 -811 2047 1976 8 928 254 287 62 56 chr4 45041975 45042119 -110588001 - B4A SINE B4 -1 291 147 8 928 480 233 26 0 chr4 45042687 45042803 -110587317 - PB1D9 SINE Alu 0 120 2 8 928 778 176 38 0 chr4 45042895 45043026 -110587094 + B1_Mus1 SINE Alu 3 138 -10 8 928 195 42 0 0 chr4 45043026 45043050 -110587070 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 928 368 276 0 22 chr4 45045032 45045121 -110584999 + PB1D10 SINE Alu 3 89 -28 9 928 1086 97 14 0 chr4 45045388 45045532 -110584588 + B1_Mus1 SINE Alu 3 148 0 9 928 346 280 171 13 chr4 45046084 45046236 -110583884 + B4A SINE B4 105 280 -12 9 928 366 250 96 0 chr4 45046314 45046418 -110583702 + PB1D10 SINE Alu 1 114 -3 9 928 612 211 45 38 chr4 45046593 45046726 -110583394 + RSINE1 SINE B4 3 136 -29 9 928 218 386 42 45 chr4 45047577 45047886 -110582234 - L2c LINE L2 -48 3339 3032 9 928 189 121 0 0 chr4 45047950 45047983 -110582137 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 9 928 191 242 31 31 chr4 45049076 45049140 -110580980 + MIR SINE MIR 72 135 -73 9 928 491 114 352 0 chr4 45049322 45049427 -110580693 + B1_Mus2 SINE Alu 5 146 -1 9 928 417 215 108 0 chr4 45049457 45049550 -110580570 + B3 SINE B2 109 211 -5 1 928 518 248 137 104 chr4 45049888 45049938 -110580182 - MT2A LTR ERVL 0 601 549 1 928 189 0 0 0 chr4 45049938 45049959 -110580161 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 928 1050 235 138 35 chr4 45049959 45050321 -110579799 - MT2A LTR ERVL -53 548 1 1 928 1098 234 52 101 chr4 45050321 45050667 -110579453 + MTEb LTR MaLR 46 374 -5 1 928 418 277 115 6 chr4 45051244 45051400 -110578720 - MER58B DNA MER1_type -20 321 149 1 928 223 254 63 0 chr4 45051591 45051678 -110578442 - B1F1 SINE Alu -51 98 6 1 928 1323 52 98 0 chr4 45051795 45051812 -110578308 - B2_Mm1t SINE B2 -1 192 176 1 928 354 23 0 0 chr4 45051812 45051855 -110578265 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 928 1323 52 98 0 chr4 45051855 45052011 -110578109 - B2_Mm1t SINE B2 -18 175 4 1 928 1269 41 0 0 chr4 45052203 45052350 -110577770 - B1_Mus2 SINE Alu 0 147 1 1 928 246 143 0 23 chr4 45052558 45052601 -110577519 + B2_Mm2 SINE B2 1 42 -153 1 928 455 214 123 88 chr4 45052780 45053013 -110577107 + RLTR13D3 LTR ERVK 944 1114 0 1 928 259 304 25 0 chr4 45053312 45053391 -110576729 - B4A SINE B4 -210 82 2 1 928 195 42 0 0 chr4 45055260 45055284 -110574836 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 928 1214 68 0 0 chr4 45055299 45055445 -110574675 - B1_Mus2 SINE Alu 0 147 2 1 928 1308 91 11 11 chr4 45055517 45055695 -110574425 + B2_Mm1t SINE B2 2 179 -14 1 928 360 115 313 26 chr4 45055727 45055842 -110574278 + B2_Mm2 SINE B2 47 194 -1 1 928 682 170 9 9 chr4 45056055 45056168 -110573952 + B3 SINE B2 98 210 -6 1 928 220 289 52 13 chr4 45057081 45057158 -110572962 + MIRb SINE MIR 124 203 -65 1 928 186 219 24 0 chr4 45057204 45057245 -110572875 - MIR SINE MIR -89 119 78 1 928 190 271 21 0 chr4 45057925 45057973 -110572147 + L2b LINE L2 3272 3320 -55 1 928 309 309 56 16 chr4 45058406 45058579 -110571541 + L2b LINE L2 3225 3405 -21 1 928 265 314 11 44 chr4 45058579 45058669 -110571451 - BC1_Mm scRNA scRNA -52 100 14 1 928 279 0 0 0 chr4 45059371 45059402 -110570718 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 928 712 224 21 7 chr4 45059407 45059551 -110570569 - RSINE1 SINE B4 -18 147 2 1 928 195 299 29 15 chr4 45060001 45060069 -110570051 + L2 LINE L2 2807 2875 -544 1 928 426 318 87 0 chr4 45060891 45061017 -110569103 - RSINE1 SINE B4 -6 159 23 1 928 342 115 0 0 chr4 45061617 45061669 -110568451 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 928 1030 203 10 5 chr4 45062231 45062429 -110567691 - B4 SINE B4 0 292 98 1 928 319 265 93 50 chr4 45062312 45062451 -110567669 - B1_Mus1 SINE Alu -3 145 1 1 928 513 291 80 47 chr4 45063377 45063590 -110566530 - B4A SINE B4 0 292 73 1 928 347 261 220 46 chr4 45063590 45063763 -110566357 - B3 SINE B2 -13 203 1 1 928 392 232 59 59 chr4 45063763 45063860 -110566260 - B4A SINE B4 -195 97 1 1 928 643 280 6 43 chr4 45064632 45064772 -110565348 + RSINE1 SINE B4 8 147 -18 1 928 1133 73 6 17 chr4 45064772 45064953 -110565167 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 928 643 280 6 43 chr4 45064953 45064976 -110565144 + RSINE1 SINE B4 148 165 0 1 928 225 145 48 0 chr4 45064984 45065046 -110565074 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 928 310 209 54 65 chr4 45065059 45065151 -110564969 + HAL1-3A_ME LINE L1 1975 2065 -793 1 928 391 342 44 12 chr4 45065415 45065575 -110564545 - ID_B1 SINE B4 -17 207 43 1 928 394 224 0 13 chr4 45065733 45065810 -110564310 - ID4 SINE ID -5 78 3 1 928 394 236 54 18 chr4 45065910 45066022 -110564098 + PB1D9 SINE Alu 5 120 0 1 928 186 304 0 0 chr4 45066156 45066268 -110563852 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 928 490 163 20 39 chr4 45066578 45066684 -110563436 + PB1D9 SINE Alu 17 120 0 1 928 1455 79 21 0 chr4 45066744 45066934 -110563186 - B2_Mm2 SINE B2 -1 194 1 1 928 2254 142 71 5 chr4 45066943 45067338 -110562782 - MTC LTR MaLR 0 421 1 1 928 252 266 116 11 chr4 45069035 45069130 -110560990 + L2b LINE L2 3082 3186 -189 1 928 309 347 42 0 chr4 45069281 45069376 -110560744 - PB1D10 SINE Alu -17 100 2 1 928 436 250 43 26 chr4 45069584 45069699 -110560421 - PB1D7 SINE Alu -2 118 2 1 928 582 160 58 101 chr4 45069801 45069940 -110560180 + B1_Mur3 SINE Alu 1 133 -16 1 928 209 30 61 0 chr4 45069949 45069982 -110560138 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 928 1274 171 24 5 chr4 45070441 45070653 -110559467 - B3 SINE B2 0 216 1 1 928 330 292 107 16 chr4 45070902 45071024 -110559096 + MIR SINE MIR 16 148 -60 1 928 247 209 0 0 chr4 45072401 45072444 -110557676 + ID4_ SINE ID 3 45 -38 1 928 319 277 12 0 chr4 45073014 45073097 -110557023 + MIR SINE MIR 63 146 -62 1 928 210 309 119 0 chr4 45073886 45073970 -110556150 + MIRc SINE MIR 46 139 -129 1 928 187 304 85 21 chr4 45074037 45074131 -110555989 + MIR SINE MIR 50 149 -59 1 928 249 351 0 0 chr4 45075470 45075544 -110554576 + MLT1K LTR MaLR 133 206 -389 1 928 423 187 10 90 chr4 45075545 45075645 -110554475 + MTEa LTR MaLR 1 92 -287 1 928 368 225 186 106 chr4 45075853 45076029 -110554091 + B3 SINE B2 2 195 -21 1 928 2583 80 3 0 chr4 45076029 45076355 -110553765 + ORR1A2 LTR MaLR 1 327 0 1 928 368 225 186 106 chr4 45076355 45076377 -110553743 + B3 SINE B2 196 216 0 1 928 763 215 28 0 chr4 45076405 45076549 -110553571 + B1_Mur2 SINE Alu 1 148 -1 1 928 288 258 112 0 chr4 45076618 45076707 -110553413 + MTEb LTR MaLR 280 378 -1 1 928 1456 136 209 31 chr4 45076916 45077259 -110552861 + ORR1D1-int LTR MaLR 995 1580 -212 1 928 1474 227 57 3 chr4 45077259 45077613 -110552507 + ORR1D1 LTR MaLR 1 373 -1 1 928 583 179 18 36 chr4 45077616 45077726 -110552394 + ORR1D1-int LTR MaLR 27 134 -1236 1 928 658 184 159 0 chr4 45077725 45077959 -110552161 - ORR1B2-int LTR MaLR -1099 271 1 1 928 234 0 0 0 chr4 45078009 45078035 -110552085 + (A)n Simple_repeat Simple_repeat 1 26 0 1 928 235 258 281 0 chr4 45078703 45078792 -110551328 + PB1D10 SINE Alu 3 116 -1 1 928 334 275 0 0 chr4 45078868 45078937 -110551183 - ID4 SINE ID -14 69 1 1 928 323 231 31 62 chr4 45078939 45079036 -110551084 - PB1D10 SINE Alu 0 117 24 1 928 296 256 45 23 chr4 45079918 45080006 -110550114 + MamRep488 DNA hAT 52 141 -78 1 928 557 181 0 0 chr4 45080098 45080192 -110549928 + B1_Mur2 SINE Alu 3 96 -53 1 928 207 0 0 0 chr4 45080192 45080215 -110549905 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 928 660 175 0 0 chr4 45080216 45080342 -110549778 + GA-rich Low_complexity Low_complexity 4 129 0 1 928 1356 146 5 23 chr4 45080426 45080644 -110549476 + URR1B DNA MER1_type 12 225 0 1 928 417 230 57 82 chr4 45081047 45081186 -110548934 + MLT1A LTR MaLR 1 138 -236 1 928 614 268 0 8 chr4 45081318 45081442 -110548678 - PB1 SINE Alu 0 127 5 1 928 1182 96 84 6 chr4 45081482 45081661 -110548459 - B2_Mm2 SINE B2 -1 194 2 1 928 221 93 0 104 chr4 45081663 45081688 -110548432 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 928 975 144 20 0 chr4 45081688 45081834 -110548286 - B1_Mur3 SINE Alu 0 149 1 1 928 221 93 0 104 chr4 45081834 45081856 -110548264 + (TTTG)n Simple_repeat Simple_repeat 2 20 0 1 928 316 269 161 0 chr4 45082698 45082791 -110547329 - L2a LINE L2 -3 3423 3316 1 928 218 195 0 0 chr4 45082796 45082837 -110547283 + A-rich Low_complexity Low_complexity 4 44 0 1 928 273 167 0 0 chr4 45082887 45082941 -110547179 + (CATG)n Simple_repeat Simple_repeat 1 54 0 1 928 209 333 139 20 chr4 45083335 45083436 -110546684 + L2a LINE L2 3289 3401 -25 1 928 432 0 0 0 chr4 45084090 45084138 -110545982 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 928 368 40 0 20 chr4 45084138 45084189 -110545931 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 928 696 212 29 7 chr4 45084204 45084342 -110545778 - B3A SINE B2 -38 160 20 1 928 416 217 287 0 chr4 45084348 45084463 -110545657 - B1_Mur3 SINE Alu 0 149 2 1 928 247 244 69 55 chr4 45084588 45084695 -110545425 - MIRc SINE MIR -118 150 31 1 928 334 270 24 112 chr4 45085020 45085145 -110544975 + PB1D10 SINE Alu 4 117 0 1 928 215 79 0 26 chr4 45085817 45085856 -110544264 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 928 641 211 20 34 chr4 45085859 45086006 -110544114 - B1_Mur1 SINE Alu 0 149 5 1 928 1065 111 85 34 chr4 45086267 45086444 -110543676 - B2_Mm1t SINE B2 -7 186 1 1 928 357 282 85 8 chr4 45086784 45086902 -110543218 + MIRb SINE MIR 132 258 -10 1 928 342 265 78 63 chr4 45087076 45087258 -110542862 - B3A SINE B2 0 216 15 1 928 332 309 0 0 chr4 45087570 45087651 -110542469 - ID4_ SINE ID -1 82 2 1 928 246 227 0 3 chr4 45087662 45087721 -110542399 - PB1 SINE Alu 0 149 76 1 928 491 233 51 29 chr4 45087836 45087973 -110542147 - B1F SINE Alu -8 141 2 1 928 207 204 0 0 chr4 45088203 45088247 -110541873 + T-rich Low_complexity Low_complexity 1 44 0 1 928 805 241 0 0 chr4 45088271 45088416 -110541704 - RSINE1 SINE B4 -17 148 4 1 14 1506 173 88 108 chr4 45088492 45088880 -110541240 + ORR1C2 LTR MaLR 5 384 0 1 929 779 236 208 11 chr4 45089794 45090068 -110540052 - Lx8 LINE L1 -178 7295 6968 1 929 715 265 97 66 chr4 45090082 45090474 -110539646 + L1M2 LINE L1 4956 5359 -784 1 929 399 313 10 0 chr4 45090489 45090588 -110539532 + RSINE1 SINE B4 38 137 -28 1 929 261 0 0 0 chr4 45090589 45090618 -110539502 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 929 620 206 52 60 chr4 45090641 45090768 -110539352 + B1_Mur1 SINE Alu 6 131 -18 2 929 977 216 182 3 chr4 45090768 45091084 -110539036 - ORR1D1 LTR MaLR 0 374 1 2 929 195 42 0 0 chr4 45091095 45091119 -110539001 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 929 416 216 30 46 chr4 45091122 45091253 -110538867 + L1_Mur3 LINE L1 5326 5454 -426 2 929 1032 48 0 0 chr4 45091254 45091380 -110538740 + B1_Mus1 SINE Alu 23 148 0 2 929 291 114 0 0 chr4 45091380 45091424 -110538696 + (A)n Simple_repeat Simple_repeat 1 44 0 2 929 751 257 73 43 chr4 45091424 45091725 -110538395 + L1_Rod LINE L1 5421 5730 -117 2 929 256 311 0 104 chr4 45092125 45092240 -110537880 + MT2B2 LTR ERVL 155 257 -327 2 929 727 239 7 7 chr4 45092140 45092283 -110537837 + B1F SINE Alu 6 148 -1 2 929 233 234 0 0 chr4 45092413 45092460 -110537660 + RSINE1 SINE B4 43 89 -76 2 929 1545 52 0 10 chr4 45092514 45092709 -110537411 + B2_Mm2 SINE B2 2 194 -1 2 929 212 0 36 0 chr4 45093163 45093191 -110536929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 929 378 264 149 9 chr4 45093212 45093319 -110536801 - PB1 SINE Alu -3 124 3 2 929 338 284 48 19 chr4 45093413 45093517 -110536603 - PB1D10 SINE Alu 0 117 11 2 929 321 207 0 151 chr4 45093986 45094185 -110535935 + (ACTG)n Simple_repeat Simple_repeat 3 171 0 2 929 272 223 15 134 chr4 45094243 45094445 -110535675 + (ACTG)n Simple_repeat Simple_repeat 3 180 0 2 929 305 315 101 58 chr4 45094478 45094667 -110535453 + MamGypLTR3 LTR Gypsy 495 691 -148 2 929 1228 36 0 0 chr4 45094948 45095088 -110535032 + B1_Mus1 SINE Alu 1 140 -8 2 929 273 196 0 0 chr4 45095390 45095446 -110534674 + (CCA)n Simple_repeat Simple_repeat 1 56 0 2 929 192 152 0 0 chr4 45096080 45096113 -110534007 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 929 182 167 0 53 chr4 45096166 45096204 -110533916 + L2a LINE L2 3313 3348 -78 2 929 234 0 0 0 chr4 45096403 45096429 -110533691 + (T)n Simple_repeat Simple_repeat 1 26 0 2 929 282 0 0 0 chr4 45096803 45096845 -110533275 - L1Md_T LINE L1 0 6582 6541 2 929 515 238 159 45 chr4 45098098 45098274 -110531846 - B3A SINE B2 -1 197 2 2 929 256 259 36 18 chr4 45098501 45098556 -110531564 - ID SINE ID -140 84 29 2 929 248 290 32 16 chr4 45098502 45098565 -110531555 - ID4 SINE ID -1 82 19 2 929 303 135 0 0 chr4 45099030 45099082 -110531038 - B3 SINE B2 -1 215 164 2 929 2993 21 21 0 chr4 45099731 45100070 -110530050 - ORR1A0 LTR MaLR 0 346 1 2 929 250 361 90 6 chr4 45100229 45100385 -110529735 + Tigger8 DNA MER2_type 32 200 -466 2 929 216 182 0 0 chr4 45100429 45100473 -110529647 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 929 820 110 10 144 chr4 45100554 45100692 -110529428 - Lx7 LINE L1 -1 7695 7571 2 929 1383 75 10 31 chr4 45100692 45100886 -110529234 + B2_Mm2 SINE B2 3 192 -3 2 929 820 110 10 144 chr4 45100886 45100948 -110529172 - Lx7 LINE L1 -126 7570 7522 2 929 1260 87 35 0 chr4 45101001 45101174 -110528946 - B2_Mm2 SINE B2 -14 181 3 2 929 3989 201 59 23 chr4 45101195 45102156 -110527964 - Lx6 LINE L1 -437 7023 6028 2 929 22854 140 24 82 chr4 45102192 45102604 -110527516 - Lx6 LINE L1 -51 5829 5418 2 929 712 76 9 37 chr4 45102604 45102713 -110527407 + B1_Mur3 SINE Alu 33 138 -11 2 929 297 51 0 0 chr4 45102713 45102752 -110527368 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 929 22854 140 24 82 chr4 45102752 45105367 -110524753 - Lx6 LINE L1 -463 5417 2946 2 929 1147 89 0 0 chr4 45105367 45105513 -110524607 + B1_Mus1 SINE Alu 2 147 -1 2 929 22854 140 24 82 chr4 45105513 45105532 -110524588 - L1_Mur3 LINE L1 -2935 2945 2945 2 929 342 0 0 0 chr4 45105532 45105570 -110524550 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 929 22854 140 24 82 chr4 45105570 45105648 -110524472 - Lx6 LINE L1 -2935 2945 2883 2 929 2241 119 141 0 chr4 45105648 45106017 -110524103 - MTC LTR MaLR 0 421 1 2 929 22854 149 50 60 chr4 45106017 45108527 -110521593 - Lx6 LINE L1 -2998 2882 306 2 929 442 289 26 48 chr4 45108537 45108726 -110521394 - B4A SINE B4 -61 231 47 2 929 27 0 0 0 chr4 45108782 45108809 -110521311 + AT_rich Low_complexity Low_complexity 1 27 0 2 929 1241 54 0 0 chr4 45108809 45108956 -110521164 - B1_Mm SINE Alu 0 147 1 2 929 626 119 246 0 chr4 45109215 45109333 -110520787 - B1_Mur3 SINE Alu 0 149 3 2 929 608 295 115 6 chr4 45109358 45109532 -110520588 - B3A SINE B2 -4 194 2 2 929 290 230 95 0 chr4 45109659 45109733 -110520387 + B4A SINE B4 171 251 -41 2 929 242 95 24 0 chr4 45109768 45109810 -110520310 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 929 551 162 248 19 chr4 45109838 45109995 -110520125 - B3A SINE B2 -5 193 1 2 929 749 242 6 19 chr4 45110249 45110409 -110519711 - RSINE1 SINE B4 0 165 8 2 929 491 239 161 12 chr4 45111009 45111170 -110518950 - B3A SINE B2 -12 186 2 2 929 1636 145 112 109 chr4 45111200 45111465 -110518655 + ORR1B2 LTR MaLR 2 273 -94 2 929 1238 41 7 0 chr4 45111465 45111611 -110518509 - B1_Mus2 SINE Alu 0 147 1 2 929 1636 145 112 109 chr4 45111611 45111702 -110518418 + ORR1B2 LTR MaLR 274 359 -8 2 929 297 301 36 73 chr4 45112160 45112325 -110517795 + RSINE1 SINE B4 1 159 -6 2 929 885 176 7 0 chr4 45112359 45112501 -110517619 + B1_Mur3 SINE Alu 1 143 -6 2 929 280 283 18 70 chr4 45112697 45112811 -110517309 - PB1D7 SINE Alu -8 112 5 2 929 1033 68 0 70 chr4 45112865 45113023 -110517097 - B1_Mm SINE Alu 0 147 1 2 929 1481 34 39 11 chr4 45113023 45113203 -110516917 - B2_Mm2 SINE B2 -9 186 1 2 929 642 276 76 61 chr4 45113749 45113946 -110516174 + ID_B1 SINE B4 25 224 0 2 929 218 174 40 92 chr4 45114159 45114235 -110515885 + B2_Mm2 SINE B2 9 80 -115 2 929 377 219 0 14 chr4 45114173 45114247 -110515873 + B4A SINE B4 21 93 -199 2 929 240 329 93 33 chr4 45114820 45114971 -110515149 + L2 LINE L2 1185 1344 -2075 2 929 892 191 71 5 chr4 45115057 45115241 -110514879 - B3 SINE B2 -19 197 2 2 929 578 205 178 10 chr4 45115254 45115451 -110514669 - L2a LINE L2 0 3426 3197 2 929 349 317 53 37 chr4 45115480 45115667 -110514453 - B3A SINE B2 -5 193 4 2 929 407 311 61 31 chr4 45116499 45116695 -110513425 + HAL1 LINE L1 582 783 -1724 2 929 186 191 0 0 chr4 45116910 45116952 -110513168 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 929 465 294 70 4 chr4 45116986 45117215 -110512905 + HAL1 LINE L1 1434 1677 -830 2 929 485 261 9 0 chr4 45117627 45117738 -110512382 + B3 SINE B2 104 215 -1 2 929 1498 54 11 0 chr4 45118540 45118726 -110511394 - B2_Mm1t SINE B2 -5 188 1 2 929 360 0 0 0 chr4 45119206 45119246 -110510874 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 929 241 194 26 77 chr4 45119381 45119459 -110510661 + B4 SINE B4 4 77 -215 2 929 568 169 96 156 chr4 45119389 45119594 -110510526 + B3 SINE B2 9 204 -12 2 929 695 175 6 139 chr4 45119594 45119760 -110510360 - B1_Mur3 SINE Alu -5 144 1 2 929 568 169 96 156 chr4 45119760 45119772 -110510348 + B3 SINE B2 205 213 -3 2 929 359 203 36 60 chr4 45120083 45120167 -110509953 - RSINE1 SINE B4 -28 137 56 2 929 1092 219 158 22 chr4 45121365 45121733 -110508387 - MTD LTR MaLR -1 418 1 2 929 236 262 16 0 chr4 45121738 45121799 -110508321 + ID_B1 SINE B4 96 157 -67 2 929 790 115 99 8 chr4 45121799 45121930 -110508190 + B1_Mus1 SINE Alu 5 147 -1 2 929 407 287 29 49 chr4 45121948 45122091 -110508029 + PB1D7 SINE Alu 1 148 -1 2 929 1620 42 0 0 chr4 45122436 45122626 -110507494 + B2_Mm1a SINE B2 2 191 -2 2 929 1186 48 0 7 chr4 45122636 45122774 -110507346 + B1_Mus2 SINE Alu 1 138 -9 2 929 279 0 0 0 chr4 45122774 45122805 -110507315 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 929 1154 82 0 0 chr4 45122820 45122966 -110507154 + B1_Mus2 SINE Alu 2 147 0 2 929 183 42 0 0 chr4 45122966 45122990 -110507130 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 929 1584 212 95 18 chr4 45123374 45123763 -110506357 + MTD LTR MaLR 1 419 0 2 929 789 113 0 53 chr4 45123843 45123974 -110506146 + B1_Mus1 SINE Alu 25 148 0 2 929 1040 219 28 5 chr4 45124331 45124542 -110505578 - B3 SINE B2 0 216 1 2 929 74 46 0 0 chr4 45124542 45124651 -110505469 + AT_rich Low_complexity Low_complexity 1 109 0 2 929 1152 102 0 18 chr4 45124651 45124820 -110505300 - B2_Mm2 SINE B2 -28 167 2 2 929 197 312 0 0 chr4 45125651 45125699 -110504421 - MIR3 SINE MIR -52 156 109 2 929 264 304 221 9 chr4 45125980 45126093 -110504027 + ID_B1 SINE B4 83 219 -5 2 929 342 0 0 0 chr4 45126196 45126234 -110503886 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 929 221 114 0 0 chr4 45126252 45126287 -110503833 - B1_Mur3 SINE Alu -23 126 92 2 929 437 221 23 0 chr4 45126314 45126400 -110503720 - B1_Mm SINE Alu -51 96 9 2 929 427 248 174 0 chr4 45126441 45126550 -110503570 + RSINE1 SINE B4 3 130 -35 2 929 493 88 12 12 chr4 45126562 45126643 -110503477 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 2 929 416 282 9 35 chr4 45126654 45126768 -110503352 + PB1D9 SINE Alu 4 114 -6 2 929 211 291 0 18 chr4 45127272 45127328 -110502792 + RSINE1 SINE B4 6 60 -105 2 929 305 169 96 27 chr4 45127315 45127388 -110502732 - RSINE1 SINE B4 -85 80 3 2 929 553 194 0 11 chr4 45127398 45127492 -110502628 - B1_Mur1 SINE Alu -2 147 55 2 929 272 178 75 88 chr4 45127437 45127517 -110502603 - MT2B LTR ERVL -338 263 185 2 929 2333 102 6 44 chr4 45127598 45127879 -110502241 - ORR1A2 LTR MaLR -1 326 58 2 929 1212 61 0 0 chr4 45127879 45128026 -110502094 - B1_Mus2 SINE Alu 0 147 1 3 929 2333 102 6 44 chr4 45128026 45128083 -110502037 - ORR1A2 LTR MaLR -270 57 1 2 929 258 105 0 0 chr4 45128184 45128222 -110501898 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 929 294 241 136 21 chr4 45128250 45128273 -110501847 - L1MA4 LINE L1 -393 5907 5883 3 929 279 0 0 0 chr4 45128273 45128304 -110501816 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 929 294 241 136 21 chr4 45128304 45128384 -110501736 - L1MA4 LINE L1 -418 5882 5796 3 929 219 69 0 0 chr4 45128384 45128413 -110501707 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 929 294 241 136 21 chr4 45128413 45128448 -110501672 - L1MA4 LINE L1 -505 5795 5753 3 929 519 165 55 0 chr4 45128455 45128545 -110501575 + B4A SINE B4 138 232 -60 3 929 562 204 44 0 chr4 45128545 45128658 -110501462 + RSINE1 SINE B4 3 120 -45 3 929 1164 61 0 26 chr4 45128732 45128884 -110501236 + B1_Mus1 SINE Alu 1 148 0 3 929 389 20 20 0 chr4 45128913 45128963 -110501157 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 3 929 1147 85 0 12 chr4 45128963 45129121 -110500999 + B2_Mm2 SINE B2 34 190 -5 3 929 226 163 20 20 chr4 45129151 45129201 -110500919 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 929 1044 169 102 5 chr4 45129219 45129415 -110500705 + B3 SINE B2 2 216 0 3 929 1533 58 0 5 chr4 45129495 45129684 -110500436 - B2_Mm2 SINE B2 -7 188 1 3 929 1039 43 65 0 chr4 45129754 45129892 -110500228 - B1_Mus1 SINE Alu 0 148 2 3 929 678 261 27 22 chr4 45129896 45130080 -110500040 - B3 SINE B2 0 216 32 3 929 585 160 90 0 chr4 45130080 45130180 -110499940 + B1_Mur3 SINE Alu 2 110 -39 3 929 1151 192 10 5 chr4 45130902 45131111 -110499009 - B3 SINE B2 -4 212 3 3 929 233 323 122 46 chr4 45131446 45131683 -110498437 + MIRb SINE MIR 5 259 -9 3 929 435 38 0 0 chr4 45131683 45131736 -110498384 + (TAA)n Simple_repeat Simple_repeat 1 53 0 3 929 240 35 0 0 chr4 45131779 45131808 -110498312 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 929 349 255 54 18 chr4 45132319 45132431 -110497689 - PB1D10 SINE Alu -1 116 1 3 929 368 320 94 40 chr4 45132647 45132849 -110497271 - MLT1A1 LTR MaLR -195 213 1 3 929 423 298 40 24 chr4 45133094 45133218 -110496902 + RSINE1 SINE B4 1 126 -39 3 929 396 0 0 0 chr4 45133221 45133265 -110496855 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 929 318 50 0 0 chr4 45133265 45133304 -110496816 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 3 929 258 316 10 10 chr4 45133360 45133456 -110496664 + L1MC3 LINE L1 7667 7762 -23 3 929 704 175 0 0 chr4 45133470 45133584 -110496536 + PB1D9 SINE Alu 2 115 -5 3 929 252 348 11 0 chr4 45133594 45133686 -110496434 + GA-rich Low_complexity Low_complexity 3 95 0 3 929 686 34 0 11 chr4 45133760 45133850 -110496270 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 3 929 979 54 46 8 chr4 45133851 45133982 -110496138 - B1_Mus2 SINE Alu -10 137 2 3 929 263 295 77 0 chr4 45133983 45134061 -110496059 + L2b LINE L2 3289 3372 -3 3 929 316 311 48 32 chr4 45134433 45134559 -110495561 + MIR3 SINE MIR 54 181 -27 3 929 25 31 0 0 chr4 45135111 45135143 -110494977 + AT_rich Low_complexity Low_complexity 1 32 0 3 929 606 276 106 33 chr4 45135304 45135433 -110494687 - L1MA4 LINE L1 -376 5924 5775 3 929 885 152 51 0 chr4 45135433 45135571 -110494549 - B1_Mur4 SINE Alu -5 145 1 3 929 606 276 106 33 chr4 45135571 45135744 -110494376 - L1MA4 LINE L1 -526 5774 5600 3 929 470 288 63 21 chr4 45135818 45135960 -110494160 + B1F SINE Alu 1 148 -1 3 929 1212 131 31 0 chr4 45137535 45137726 -110492394 - URR1B DNA MER1_type -28 197 1 3 929 278 232 9 108 chr4 45139144 45139255 -110490865 - MIRb SINE MIR -32 236 137 3 929 341 293 82 89 chr4 45139370 45139516 -110490604 + RSINE1 SINE B4 3 147 -18 3 929 207 0 0 0 chr4 45139533 45139556 -110490564 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 929 502 268 132 56 chr4 45139578 45139827 -110490293 + L2 LINE L2 2449 2716 -703 3 929 497 265 121 102 chr4 45140588 45140844 -110489276 + B4A SINE B4 2 262 -30 3 929 558 43 0 0 chr4 45140845 45140914 -110489206 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 929 884 158 0 33 chr4 45141282 45141433 -110488687 + B1_Mur4 SINE Alu 3 148 -2 3 929 424 200 167 0 chr4 45141452 45141542 -110488578 - B3 SINE B2 -8 208 104 3 929 357 256 131 68 chr4 45141614 45141756 -110488364 + Lx9 LINE L1 7387 7516 -128 3 929 396 0 0 0 chr4 45141756 45141800 -110488320 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 929 357 256 131 68 chr4 45141800 45141879 -110488241 + Lx9 LINE L1 7517 7621 -23 3 929 288 0 0 0 chr4 45142083 45142115 -110488005 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 929 1536 38 11 11 chr4 45142147 45142334 -110487786 + B2_Mm2 SINE B2 1 187 -8 3 929 238 239 28 14 chr4 45142357 45142429 -110487691 - L1M5 LINE L1 -320 5804 5732 3 929 528 214 0 0 chr4 45142662 45142751 -110487369 - RSINE1 SINE B4 -33 132 44 3 929 476 227 70 0 chr4 45142840 45142968 -110487152 + B1F SINE Alu 3 139 -10 3 929 198 0 0 0 chr4 45143298 45143320 -110486800 + (T)n Simple_repeat Simple_repeat 1 22 0 3 929 857 150 0 6 chr4 45143742 45143923 -110486197 + GA-rich Low_complexity Low_complexity 1 180 0 3 929 239 103 0 81 chr4 45143905 45143979 -110486141 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 3 929 222 258 161 15 chr4 45144132 45144262 -110485858 + L3 LINE CR1 4144 4292 -197 3 929 1484 185 44 62 chr4 45144313 45144653 -110485467 - RLTR31A_Mm LTR ERVK -102 482 149 3 929 1142 133 12 0 chr4 45144659 45144832 -110485288 + B2_Mm1t SINE B2 5 179 -14 3 929 353 108 359 40 chr4 45144875 45144981 -110485139 + B2_Mm2 SINE B2 47 184 -11 3 929 968 138 6 30 chr4 45144977 45145141 -110484979 - RLTR31A_Mm LTR ERVK -424 160 1 3 929 446 164 48 0 chr4 45145257 45145403 -110484717 + (TCCA)n Simple_repeat Simple_repeat 1 153 0 3 929 202 319 69 0 chr4 45145424 45145496 -110484624 - L2a LINE L2 -12 3414 3338 3 929 1315 70 23 0 chr4 45145501 45145673 -110484447 + B2_Mm2 SINE B2 1 176 -19 3 929 352 330 50 25 chr4 45146080 45146279 -110483841 + L2c LINE L2 3184 3387 0 3 929 1438 228 18 113 chr4 45146447 45146589 -110483531 + MTD LTR MaLR 3 121 -298 3 929 1281 27 0 0 chr4 45146589 45146735 -110483385 - B1_Mm SINE Alu 0 147 2 3 929 1438 228 18 113 chr4 45146735 45146973 -110483147 + MTD LTR MaLR 122 347 -72 3 929 352 159 8 103 chr4 45147005 45147111 -110483009 + MTD LTR MaLR 278 379 -40 3 929 249 310 70 17 chr4 45147415 45147530 -110482590 - MamRep605 Unknown Unknown -46 830 710 3 929 322 326 100 63 chr4 45147696 45147886 -110482234 - MamRep605 Unknown Unknown -261 615 419 3 929 557 272 111 0 chr4 45148044 45148206 -110481914 - MamRep605 Unknown Unknown -677 199 20 3 929 355 184 87 0 chr4 45148604 45148689 -110481431 + PB1D10 SINE Alu 2 95 -54 3 929 417 20 0 0 chr4 45148689 45148739 -110481381 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 929 260 271 44 56 chr4 45149646 45149736 -110480384 + MIR SINE MIR 128 216 -46 3 929 372 316 42 54 chr4 45149973 45150021 -110480099 - RSINE1 SINE B4 0 165 120 3 929 303 93 0 0 chr4 45150021 45150064 -110480056 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 929 372 316 42 54 chr4 45150064 45150182 -110479938 - RSINE1 SINE B4 -46 119 1 3 929 433 274 106 33 chr4 45150205 45150356 -110479764 + RSINE1 SINE B4 4 165 0 3 929 21 0 0 0 chr4 45150391 45150412 -110479708 + AT_rich Low_complexity Low_complexity 1 21 0 3 929 214 264 19 0 chr4 45151033 45151086 -110479034 + L2b LINE L2 2697 2750 -669 3 929 469 283 0 10 chr4 45151906 45152006 -110478114 - PB1 SINE Alu -7 120 22 3 929 315 344 44 59 chr4 45152012 45152148 -110477972 + L2b LINE L2 3229 3362 -13 3 929 259 345 27 40 chr4 45153038 45153186 -110476934 + MIRb SINE MIR 122 267 -1 3 929 375 253 23 0 chr4 45153381 45153468 -110476652 + PB1D7 SINE Alu 24 112 -8 3 929 849 313 29 11 chr4 45153477 45153755 -110476365 + B4A SINE B4 2 284 -8 3 929 297 0 0 0 chr4 45153772 45153805 -110476315 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 929 21 0 0 0 chr4 45153807 45153828 -110476292 + AT_rich Low_complexity Low_complexity 1 21 0 3 929 189 195 0 0 chr4 45154337 45154378 -110475742 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 929 378 271 11 148 chr4 45154386 45154568 -110475552 - RSINE1 SINE B4 -6 159 3 3 929 311 337 187 8 chr4 45154707 45154964 -110475156 + LTR78 LTR ERV1 199 501 -803 3 929 453 303 152 52 chr4 45155169 45155538 -110474582 - MLT1A1 LTR MaLR -2 406 1 3 929 435 212 8 41 chr4 45155894 45156017 -110474103 - ID_B1 SINE B4 -14 210 92 3 929 283 282 36 51 chr4 45156017 45156032 -110474088 - B1_Mur4 SINE Alu -14 136 1 3 929 405 214 19 58 chr4 45156879 45156983 -110473137 + B4A SINE B4 1 100 -192 3 929 1034 142 128 30 chr4 45157505 45157708 -110472412 + URR1B DNA MER1_type 1 223 -2 3 929 414 0 0 0 chr4 45158182 45158228 -110471892 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 929 1089 67 0 0 chr4 45158475 45158609 -110471511 + B1_Mus2 SINE Alu 1 134 -13 3 929 198 0 0 0 chr4 45158609 45158631 -110471489 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 929 402 282 10 0 chr4 45158640 45158743 -110471377 + PB1D10 SINE Alu 1 104 -13 3 929 735 44 0 0 chr4 45158766 45158857 -110471263 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 3 929 465 61 353 39 chr4 45158857 45158959 -110471161 - B2_Mm2 SINE B2 -15 180 47 3 929 1355 90 6 0 chr4 45159052 45159229 -110470891 - B2_Mm1t SINE B2 -14 179 2 3 929 304 244 23 0 chr4 45159499 45159585 -110470535 + (CAA)n Simple_repeat Simple_repeat 3 90 0 3 929 345 292 86 55 chr4 45160329 45160492 -110469628 + MER5A DNA MER1_type 15 182 -7 3 929 465 223 20 5 chr4 45160797 45160897 -110469223 - B1F1 SINE Alu -51 98 1 3 929 644 228 29 0 chr4 45161072 45161208 -110468912 - B1_Mur1 SINE Alu -8 141 2 3 929 362 235 0 0 chr4 45161776 45161844 -110468276 - B2_Mm2 SINE B2 -119 76 9 3 929 186 100 39 39 chr4 45161889 45161941 -110468179 + (TTATA)n Simple_repeat Simple_repeat 1 52 0 4 929 24 0 0 0 chr4 45161975 45161999 -110468121 + AT_rich Low_complexity Low_complexity 1 24 0 4 929 2070 131 92 0 chr4 45162022 45162358 -110467762 + ORR1B2 LTR MaLR 1 367 0 4 929 745 221 35 29 chr4 45162358 45162369 -110467751 - B3A SINE B2 -23 175 165 4 929 243 0 0 0 chr4 45162369 45162396 -110467724 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 929 745 221 35 29 chr4 45162396 45162556 -110467564 - B3A SINE B2 -34 164 3 4 929 708 168 8 25 chr4 45163044 45163166 -110466954 + B1_Mur1 SINE Alu 9 128 -21 4 929 295 169 28 0 chr4 45163209 45163280 -110466840 + GA-rich Low_complexity Low_complexity 2 74 0 4 929 542 227 157 11 chr4 45163356 45163478 -110466642 + ID_B1 SINE B4 5 140 -84 4 929 381 22 0 0 chr4 45163478 45163524 -110466596 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 929 542 227 157 11 chr4 45163524 45163579 -110466541 + ID_B1 SINE B4 141 207 -17 4 929 217 284 135 0 chr4 45164020 45164094 -110466026 + RSINE1 SINE B4 3 86 -79 4 929 702 0 0 0 chr4 45164124 45164202 -110465918 + (TTTCC)n Simple_repeat Simple_repeat 2 79 0 4 929 1764 201 61 21 chr4 45164217 45164593 -110465527 + MTD LTR MaLR 18 408 -11 4 929 505 248 77 8 chr4 45164585 45164715 -110465405 + B3 SINE B2 70 208 -8 4 929 22 56 0 0 chr4 45165157 45165193 -110464927 + AT_rich Low_complexity Low_complexity 1 36 0 4 929 627 159 175 0 chr4 45165317 45165443 -110464677 + B1_Mur4 SINE Alu 3 150 0 4 929 275 78 0 59 chr4 45165449 45165517 -110464603 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 929 319 294 46 0 chr4 45165542 45165651 -110464469 - RSINE1 SINE B4 -11 154 41 4 929 370 241 109 86 chr4 45165669 45165973 -110464147 - L1MC LINE L1 -2385 5610 5300 4 929 844 68 0 0 chr4 45165982 45166085 -110464035 - B2_Mm2 SINE B2 -90 105 3 4 929 273 258 46 20 chr4 45166088 45166225 -110463895 - L1MC LINE L1 -850 5329 5189 4 929 545 270 134 19 chr4 45166307 45166340 -110463780 - L1MC LINE L1 -1093 5053 5013 4 929 972 198 28 24 chr4 45166340 45166552 -110463568 - B3 SINE B2 -2 214 2 4 929 578 270 134 19 chr4 45166552 45166839 -110463281 - L1MC LINE L1 -1134 5012 4697 4 929 551 273 14 61 chr4 45166841 45166989 -110463131 - ID_B1 SINE B4 -5 219 79 4 929 194 105 0 26 chr4 45166989 45167028 -110463092 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 929 375 304 93 70 chr4 45167072 45167330 -110462790 - B4A SINE B4 -20 272 9 4 929 240 271 46 9 chr4 45167378 45167486 -110462634 - L1MC LINE L1 -1489 4657 4546 4 929 962 154 0 0 chr4 45167714 45167857 -110462263 - B1_Mur4 SINE Alu 0 150 8 4 929 438 281 152 0 chr4 45167924 45167974 -110462146 - L1MD LINE L1 -1900 4246 4197 4 929 515 16 16 0 chr4 45167974 45168038 -110462082 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 4 929 438 281 152 0 chr4 45168038 45168257 -110461863 - L1MD LINE L1 -1950 4196 3938 4 929 343 304 67 112 chr4 45168258 45168437 -110461683 - ORR1E LTR MaLR -2 357 194 4 929 4474 63 30 2 chr4 45168437 45169005 -110461115 + MT2B2 LTR ERVL 1 584 0 4 929 343 304 67 112 chr4 45169005 45169199 -110460921 - ORR1E LTR MaLR -166 193 1 4 929 365 260 93 49 chr4 45169199 45169361 -110460759 - L1MC LINE L1 -2206 3940 3772 4 929 804 143 165 32 chr4 45169382 45169570 -110460550 - B3 SINE B2 -3 213 1 4 929 680 231 56 51 chr4 45169591 45169787 -110460333 - B3A SINE B2 0 198 2 4 929 276 271 43 0 chr4 45169790 45169860 -110460260 - PB1D10 SINE Alu -24 93 21 4 929 340 164 36 0 chr4 45170474 45170529 -110459591 - RSINE1 SINE B4 -108 57 1 4 929 2359 103 0 0 chr4 45170905 45171224 -110458896 - ORR1A2 LTR MaLR -8 319 1 4 929 1371 239 110 21 chr4 45171707 45172079 -110458041 + MTD LTR MaLR 1 405 -14 4 929 228 184 0 0 chr4 45172108 45172157 -110457963 + (TTA)n Simple_repeat Simple_repeat 3 51 0 4 929 321 232 32 0 chr4 45172162 45172257 -110457863 - L1MA5 LINE L1 -27 6273 6176 4 929 238 302 0 34 chr4 45172426 45172515 -110457605 + C-rich Low_complexity Low_complexity 4 89 0 4 929 245 250 0 0 chr4 45172460 45172512 -110457608 + CT-rich Low_complexity Low_complexity 3 54 0 4 929 1094 189 47 0 chr4 45172515 45172705 -110457415 - B3 SINE B2 -16 200 2 4 929 591 284 7 7 chr4 45172788 45172937 -110457183 - B1F SINE Alu 0 149 1 4 929 222 35 0 0 chr4 45173000 45173018 -110457102 + (TG)n Simple_repeat Simple_repeat 2 19 0 4 929 243 0 0 0 chr4 45173018 45173045 -110457075 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 929 222 35 0 0 chr4 45173045 45173055 -110457065 + (TG)n Simple_repeat Simple_repeat 2 11 0 4 929 599 53 52 17 chr4 45173055 45173170 -110456950 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 4 929 234 221 62 41 chr4 45173182 45173328 -110456792 + Lx9 LINE L1 7478 7626 -18 4 929 437 239 78 90 chr4 45173403 45173569 -110456551 - B3A SINE B2 -28 170 7 4 929 428 350 77 59 chr4 45173574 45173966 -110456154 - L1MC5 LINE L1 -471 7490 7092 4 929 218 182 40 120 chr4 45174094 45174169 -110455951 - ID SINE ID -155 69 1 4 929 472 303 76 0 chr4 45174169 45174286 -110455834 + MER63B DNA AcHobo 307 434 -2 4 929 686 245 209 49 chr4 45174647 45174899 -110455221 - B4A SINE B4 0 292 1 4 929 317 308 93 28 chr4 45175486 45175593 -110454527 + MER63B DNA AcHobo 318 431 -5 4 929 338 129 16 0 chr4 45175857 45175919 -110454201 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 4 929 1007 156 26 21 chr4 45175934 45176124 -110453996 + B2_Mm2 SINE B2 2 192 -3 4 929 317 364 34 104 chr4 45177126 45177363 -110452757 - ORR1E LTR MaLR -3 356 125 4 929 477 0 0 0 chr4 45177363 45177416 -110452704 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 4 929 317 364 34 104 chr4 45177416 45177450 -110452670 - ORR1E LTR MaLR -235 124 99 4 929 893 113 7 36 chr4 45177450 45177588 -110452532 - B1_Mur3 SINE Alu -11 138 5 4 929 317 364 34 104 chr4 45177588 45177698 -110452422 - ORR1E LTR MaLR -261 98 2 4 929 1420 205 117 6 chr4 45178063 45178396 -110451724 + ORR1D2 LTR MaLR 1 370 0 4 929 398 270 67 73 chr4 45178724 45178870 -110451250 + RSINE1 SINE B4 3 148 -17 4 929 330 26 0 0 chr4 45178870 45178909 -110451211 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 929 398 270 67 73 chr4 45178909 45178926 -110451194 + RSINE1 SINE B4 149 165 0 4 929 306 315 24 24 chr4 45178948 45179117 -110451003 + L1M5 LINE L1 5354 5522 -602 4 929 341 160 141 5 chr4 45179206 45179301 -110450819 - B1_Mur3 SINE Alu 0 149 46 4 929 257 309 107 10 chr4 45179302 45179498 -110450622 + L1M5 LINE L1 5631 5845 -279 4 929 423 216 0 64 chr4 45179500 45179594 -110450526 - RSINE1 SINE B4 -77 88 1 4 929 349 350 17 8 chr4 45179807 45179925 -110450195 - MLT1G3 LTR MaLR -86 509 391 4 929 332 304 148 33 chr4 45180099 45180429 -110449691 - MLT1G3 LTR MaLR -208 387 20 4 929 698 169 96 0 chr4 45180538 45180674 -110449446 - ORR1C2 LTR MaLR 0 384 236 4 929 444 307 8 8 chr4 45180717 45180845 -110449275 - MTEb LTR MaLR 0 379 252 4 929 248 290 62 31 chr4 45180896 45180932 -110449188 - PB1 SINE Alu -28 99 1 4 929 274 241 0 33 chr4 45180932 45180992 -110449128 - ID_B1 SINE B4 -85 139 82 4 929 233 261 123 0 chr4 45181330 45181395 -110448725 - B2_Mm2 SINE B2 -120 75 3 4 929 747 337 134 3 chr4 45181395 45181716 -110448404 - MER119 DNA MER1_type -198 385 23 4 929 1534 279 120 20 chr4 45182740 45183424 -110446696 - Lx8 LINE L1 -18 7455 6704 4 929 989 166 193 0 chr4 45183454 45183635 -110446485 - B3 SINE B2 0 216 1 4 929 1186 62 7 0 chr4 45183962 45184106 -110446014 + B1_Mus2 SINE Alu 2 146 -1 4 929 477 161 0 0 chr4 45184971 45185058 -110445062 + CT-rich Low_complexity Low_complexity 3 89 0 4 929 685 196 86 43 chr4 45185058 45185245 -110444875 - B3A SINE B2 0 195 1 4 929 256 414 70 0 chr4 45185359 45185493 -110444627 + MIRc SINE MIR 46 191 -77 4 929 782 256 14 72 chr4 45185707 45185930 -110444190 + B4A SINE B4 6 215 -77 4 929 279 0 0 0 chr4 45185937 45185968 -110444152 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 929 189 0 0 0 chr4 45186027 45186048 -110444072 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 4 929 1230 103 0 6 chr4 45186048 45186214 -110443906 - B2_Mm2 SINE B2 -30 165 1 4 929 587 250 61 0 chr4 45186236 45186416 -110443704 - RMER1C Other Other -10 1332 1142 4 929 847 138 15 23 chr4 45186419 45186552 -110443568 + B1_Mur1 SINE Alu 18 149 0 4 929 261 139 0 0 chr4 45186553 45186596 -110443524 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 4 929 611 217 0 0 chr4 45186625 45186731 -110443389 + B1_Mur2 SINE Alu 37 142 -7 4 929 345 100 0 0 chr4 45186740 45186790 -110443330 + (GGA)n Simple_repeat Simple_repeat 3 52 0 4 929 495 0 0 0 chr4 45186796 45186851 -110443269 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 4 929 459 284 136 96 chr4 45187040 45187394 -110442726 - L1MDa LINE L1 -6210 423 56 4 929 439 45 30 0 chr4 45187534 45187600 -110442520 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 4 929 819 0 0 0 chr4 45187812 45187903 -110442217 + (TTTCC)n Simple_repeat Simple_repeat 1 91 0 4 929 320 121 35 0 chr4 45187907 45187965 -110442155 + CT-rich Low_complexity Low_complexity 2 61 0 4 929 327 309 37 0 chr4 45187989 45188070 -110442050 - B1F2 SINE Alu -58 91 8 4 929 347 200 81 54 chr4 45188107 45188181 -110441939 + B3A SINE B2 1 76 -122 4 929 1359 81 43 0 chr4 45188220 45188406 -110441714 - B2_Mm2 SINE B2 0 195 2 4 929 450 319 50 0 chr4 45188446 45188587 -110441533 + B1F SINE Alu 2 149 0 4 929 365 341 111 0 chr4 45188771 45188897 -110441223 + MER91A DNA Tip100 35 174 -22 4 929 360 94 0 0 chr4 45188924 45188977 -110441143 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 929 723 272 19 0 chr4 45188996 45189154 -110440966 - B3A SINE B2 -24 174 14 4 929 2065 162 8 37 chr4 45189396 45189773 -110440347 - ORR1D1 LTR MaLR -8 366 1 4 929 439 328 88 11 chr4 45190047 45190229 -110439891 + MIRc SINE MIR 14 209 -59 4 929 1249 61 0 0 chr4 45190309 45190456 -110439664 + B1_Mus2 SINE Alu 1 147 0 4 929 23 0 0 0 chr4 45190457 45190480 -110439640 + AT_rich Low_complexity Low_complexity 1 23 0 5 929 720 209 22 0 chr4 45191141 45191275 -110438845 + B1_Mus1 SINE Alu 6 142 -6 5 929 316 309 45 117 chr4 45191145 45191277 -110438843 + B4A SINE B4 96 223 -69 5 929 180 0 0 0 chr4 45191277 45191297 -110438823 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 5 929 316 309 45 117 chr4 45191297 45191318 -110438802 + B4A SINE B4 224 238 -54 5 929 264 265 14 14 chr4 45191313 45191382 -110438738 - ORR1E LTR MaLR -5 374 306 5 929 6245 13 0 0 chr4 45191404 45192094 -110438026 - L1Md_A LINE L1 -1 6581 5892 5 929 586 296 114 27 chr4 45192163 45192382 -110437738 - ORR1E LTR MaLR -121 238 1 5 929 454 206 39 0 chr4 45192810 45192912 -110437208 - PB1D10 SINE Alu 0 117 12 5 929 180 200 0 0 chr4 45194065 45194105 -110436015 + (TATG)n Simple_repeat Simple_repeat 1 40 0 5 929 374 331 44 50 chr4 45194594 45194753 -110435367 - MIR SINE MIR -100 162 5 5 929 447 250 0 97 chr4 45194807 45194830 -110435290 + MT2B LTR ERVL 146 156 -445 5 929 898 136 0 0 chr4 45194830 45194955 -110435165 + B1_Mm SINE Alu 2 126 -21 5 929 777 228 38 12 chr4 45195093 45195253 -110434867 + B3A SINE B2 2 165 -33 5 929 186 118 0 0 chr4 45195262 45195296 -110434824 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 929 1125 64 0 21 chr4 45195677 45195820 -110434300 + B1_Mm SINE Alu 1 140 -7 5 929 21 36 0 0 chr4 45197557 45197585 -110432535 + GC_rich Low_complexity Low_complexity 1 28 0 5 929 222 242 121 24 chr4 45198426 45198574 -110431546 + MIR3 SINE MIR 18 173 -35 5 929 25 0 0 0 chr4 45198867 45198892 -110431228 + AT_rich Low_complexity Low_complexity 1 25 0 5 929 198 0 0 0 chr4 45200842 45200864 -110429256 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 929 692 279 12 48 chr4 45200868 45201034 -110429086 - RSINE1 SINE B4 -4 161 2 5 929 214 222 37 0 chr4 45201080 45201134 -110428986 + MIR SINE MIR 164 219 -43 5 929 693 276 20 0 chr4 45201134 45201286 -110428834 + RSINE1 SINE B4 2 156 -9 5 929 1239 144 0 43 chr4 45201376 45201586 -110428534 - B3 SINE B2 -6 210 10 5 929 280 192 75 88 chr4 45201515 45201595 -110428525 - B4 SINE B4 -212 80 2 5 929 213 209 174 1 chr4 45201664 45201749 -110428371 - L2a LINE L2 -290 3085 2988 5 929 378 74 0 0 chr4 45203656 45203710 -110426410 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 929 267 209 124 34 chr4 45204131 45204220 -110425900 + AmnSINE1 SINE SINE 3 99 -476 5 929 3135 29 38 43 chr4 45204608 45205006 -110425114 + MTA_Mm LTR MaLR 1 396 0 5 929 221 354 34 17 chr4 45205151 45205269 -110424851 - L3 LINE CR1 -154 4335 4216 5 929 384 155 0 0 chr4 45207329 45207400 -110422720 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 929 1246 55 0 0 chr4 45207501 45207647 -110422473 + B1_Mus2 SINE Alu 2 147 0 5 929 953 176 0 0 chr4 45207798 45207946 -110422174 - B1_Mus1 SINE Alu 0 148 1 5 929 345 197 0 0 chr4 45207975 45208051 -110422069 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 929 502 175 316 7 chr4 45208051 45208206 -110421914 - B3 SINE B2 -13 203 1 5 929 222 311 10 82 chr4 45208243 45208341 -110421779 - PB1D10 SINE Alu -21 96 6 5 929 22 0 0 0 chr4 45208680 45208702 -110421418 + AT_rich Low_complexity Low_complexity 1 22 0 5 929 248 355 82 19 chr4 45209155 45209313 -110420807 - L2c LINE L2 -165 3222 3055 5 929 21 0 0 0 chr4 45209732 45209753 -110420367 + GC_rich Low_complexity Low_complexity 1 21 0 5 929 638 197 62 8 chr4 45210438 45210566 -110419554 + B1_Mur1 SINE Alu 2 136 -13 5 929 574 239 147 7 chr4 45210711 45210854 -110419266 - B3A SINE B2 -34 164 2 5 929 336 182 143 0 chr4 45211149 45211226 -110418894 - B1_Mur3 SINE Alu -22 127 40 5 929 212 163 0 0 chr4 45211812 45211855 -110418265 + T-rich Low_complexity Low_complexity 1 43 0 5 929 1185 75 0 0 chr4 45211857 45212004 -110418116 - B1_Mus1 SINE Alu -1 147 1 5 929 978 246 53 0 chr4 45213010 45213217 -110416903 - ID_B1 SINE B4 0 224 7 5 929 284 261 74 83 chr4 45213354 45213475 -110416645 + B1F SINE Alu 1 120 -29 5 929 359 241 52 69 chr4 45213368 45213484 -110416636 + ID_B1 SINE B4 99 212 -12 5 929 213 39 0 0 chr4 45213487 45213513 -110416607 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 5 929 189 152 0 132 chr4 45214604 45214657 -110415463 - MIRc SINE MIR -39 229 184 5 929 455 261 133 7 chr4 45214816 45214959 -110415161 - RSINE1 SINE B4 -2 163 3 5 929 829 254 75 10 chr4 45214965 45215164 -110414956 - ID_B1 SINE B4 -8 216 5 5 929 419 164 0 40 chr4 45215184 45215260 -110414860 - PB1D10 SINE Alu -9 108 36 5 929 1182 63 0 0 chr4 45215410 45215553 -110414567 + B1_Mus1 SINE Alu 1 143 -5 5 929 207 0 0 0 chr4 45215630 45215653 -110414467 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 5 929 191 208 0 36 chr4 45215654 45215709 -110414411 + CT-rich Low_complexity Low_complexity 4 56 0 5 929 447 200 93 19 chr4 45215718 45215825 -110414295 - PB1D9 SINE Alu -3 117 3 5 929 288 283 18 70 chr4 45216640 45216754 -110413366 + MIR SINE MIR 92 199 -63 5 929 410 264 19 0 chr4 45217741 45217847 -110412273 - RSINE1 SINE B4 -2 163 56 5 929 481 195 104 17 chr4 45218228 45218334 -110411786 + ID_B1 SINE B4 97 213 -11 5 929 243 0 0 0 chr4 45218334 45218361 -110411759 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 929 231 36 0 0 chr4 45218383 45218411 -110411709 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 5 929 198 0 0 0 chr4 45218487 45218509 -110411611 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 929 723 213 22 0 chr4 45218513 45218649 -110411471 - B1_Mur3 SINE Alu -8 141 3 5 929 190 206 0 0 chr4 45219539 45219573 -110410547 - L2b LINE L2 -1 3374 3341 5 930 458 210 0 0 chr4 45219842 45219923 -110410197 + ID4_ SINE ID 1 81 -2 5 930 401 167 11 0 chr4 45220070 45220085 -110410035 + polypurine Low_complexity Low_complexity 3 17 0 5 930 1156 62 14 14 chr4 45220085 45220232 -110409888 + B1_Mm SINE Alu 1 147 0 5 930 401 167 11 0 chr4 45220232 45220306 -110409814 + GA-rich Low_complexity Low_complexity 18 92 0 5 930 202 200 0 24 chr4 45220308 45220340 -110409780 + polypurine Low_complexity Low_complexity 2 33 0 5 930 288 102 0 0 chr4 45220340 45220389 -110409731 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 5 930 274 310 44 58 chr4 45220444 45220581 -110409539 - MIRb SINE MIR -1 267 133 5 930 267 321 155 21 chr4 45220663 45220857 -110409263 - L2 LINE L2 -542 2877 2658 5 930 282 272 24 24 chr4 45220940 45221023 -110409097 - ID4_ SINE ID 0 83 1 5 930 499 226 28 0 chr4 45223267 45223373 -110406747 - RSINE1 SINE B4 -54 111 3 5 930 1390 257 72 41 chr4 45223373 45223929 -110406191 - L1MB5 LINE L1 -37 6137 5565 5 930 850 132 27 27 chr4 45224514 45224662 -110405458 - B1_Mus1 SINE Alu 0 148 1 5 930 256 261 192 26 chr4 45224915 45225071 -110405049 + L2a LINE L2 3178 3388 -38 5 930 619 269 15 0 chr4 45225107 45225241 -110404879 + B4A SINE B4 2 137 -155 5 930 333 347 20 20 chr4 45225850 45226003 -110404117 + MER113A DNA MER1_type 30 182 -132 5 930 397 287 43 0 chr4 45226914 45227008 -110403112 + RSINE1 SINE B4 43 140 -25 5 930 21 0 0 0 chr4 45227099 45227120 -110403000 + AT_rich Low_complexity Low_complexity 1 21 0 5 930 351 126 15 19 chr4 45227302 45227388 -110402732 + B1_Mur4 SINE Alu 43 150 0 5 930 1228 129 17 7 chr4 45227472 45227694 -110402426 - ORR1B1 LTR MaLR -8 386 98 5 930 228 227 81 111 chr4 45228300 45228399 -110401721 + MTEa LTR MaLR 272 367 -12 5 930 203 276 17 17 chr4 45228625 45228684 -110401436 + MER5A DNA MER1_type 46 104 -85 5 930 537 219 19 0 chr4 45228813 45228918 -110401202 - B3 SINE B2 -108 108 2 5 930 424 286 17 28 chr4 45228919 45229161 -110400959 + CT-rich Low_complexity Low_complexity 1 239 0 5 930 316 301 81 40 chr4 45229361 45229510 -110400610 - L1M4 LINE L1 -2262 3884 3730 5 930 21 36 0 0 chr4 45229628 45229656 -110400464 + AT_rich Low_complexity Low_complexity 1 28 0 5 930 722 230 21 43 chr4 45230145 45230331 -110399789 - B3A SINE B2 -16 182 1 5 930 1173 200 5 14 chr4 45231004 45231222 -110398898 + B3 SINE B2 1 216 0 5 930 1481 65 0 5 chr4 45231230 45231417 -110398703 - B2_Mm2 SINE B2 -9 186 1 5 930 329 145 16 0 chr4 45231427 45231489 -110398631 + A-rich Low_complexity Low_complexity 4 66 0 5 930 498 292 12 24 chr4 45231613 45231778 -110398342 + RSINE1 SINE B4 2 164 -1 5 930 355 321 82 68 chr4 45232356 45232650 -110397470 + L3 LINE CR1 4088 4385 -104 5 930 248 344 164 0 chr4 45233260 45233388 -110396732 - L3 LINE CR1 -56 4433 4285 5 930 272 150 12 59 chr4 45233682 45233767 -110396353 - Lx4B LINE L1 -4 7054 6974 5 930 1142 126 4 70 chr4 45233767 45233997 -110396123 - Lx4B LINE L1 -13 7045 6831 5 930 235 65 21 21 chr4 45234373 45234420 -110395700 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 930 1137 75 7 7 chr4 45234593 45234740 -110395380 + B1_Mm SINE Alu 1 147 0 5 930 390 219 0 14 chr4 45234768 45234842 -110395278 + PB1D9 SINE Alu 43 115 -5 5 930 21 0 0 0 chr4 45234884 45234905 -110395215 + AT_rich Low_complexity Low_complexity 1 21 0 5 930 1196 62 7 0 chr4 45234907 45235053 -110395067 + B1_Mus2 SINE Alu 1 147 0 5 930 282 56 0 0 chr4 45235069 45235105 -110395015 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 930 1156 188 14 18 chr4 45235386 45235603 -110394517 - B3 SINE B2 0 216 1 6 930 495 221 122 0 chr4 45235760 45235891 -110394229 + B1F2 SINE Alu 1 147 -2 6 930 1292 91 11 0 chr4 45235914 45236090 -110394030 + B2_Mm1t SINE B2 2 179 -14 6 930 401 88 0 12 chr4 45236123 45236223 -110393897 + B2_Mm2 SINE B2 47 181 -14 6 930 288 102 0 0 chr4 45236326 45236375 -110393745 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 930 650 279 18 24 chr4 45236384 45236553 -110393567 - B4A SINE B4 0 292 125 6 930 1498 129 87 19 chr4 45236674 45236991 -110393129 - ORR1B1 LTR MaLR 0 384 2 6 930 24 0 0 0 chr4 45237280 45237304 -110392816 + AT_rich Low_complexity Low_complexity 1 24 0 6 930 303 266 164 57 chr4 45237334 45237407 -110392713 - HAL1 LINE L1 -107 2400 2330 6 930 418 257 206 5 chr4 45237407 45237591 -110392529 - ID_B1 SINE B4 -1 223 3 6 930 303 266 164 57 chr4 45237591 45237780 -110392340 - HAL1 LINE L1 -178 2329 2110 6 930 809 199 50 31 chr4 45237787 45237948 -110392172 - B3A SINE B2 -19 197 34 6 930 500 152 42 11 chr4 45238062 45238171 -110391949 + B1_Mur1 SINE Alu 6 121 -28 6 930 255 286 28 101 chr4 45238256 45238365 -110391755 - B1F2 SINE Alu -2 118 18 6 930 1908 160 68 8 chr4 45238433 45238786 -110391334 - ORR1C1 LTR MaLR -4 374 1 6 930 998 122 0 13 chr4 45239570 45239720 -110390400 - B1_Mur4 SINE Alu -2 148 1 6 930 689 255 33 38 chr4 45239896 45240136 -110389984 + L1MD3 LINE L1 7730 7968 -27 6 930 369 0 0 0 chr4 45240157 45240198 -110389922 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 930 444 244 185 0 chr4 45240234 45240411 -110389709 - ID_B1 SINE B4 -8 216 7 6 930 1199 43 0 0 chr4 45240539 45240679 -110389441 - B1_Mus2 SINE Alu -6 141 2 6 930 250 264 42 83 chr4 45240751 45240871 -110389249 + Charlie9 DNA MER1_type 22 136 -2621 6 930 744 273 60 74 chr4 45240901 45241028 -110389092 + L1MC4a LINE L1 5575 5702 -2180 6 930 1450 80 16 0 chr4 45241028 45241216 -110388904 - B2_Mm2 SINE B2 -4 191 1 6 930 744 273 60 74 chr4 45241216 45241452 -110388668 + L1MC4a LINE L1 5703 5933 -1949 6 930 894 229 37 9 chr4 45241675 45241891 -110388229 - ID_B1 SINE B4 -2 222 1 6 930 559 228 62 28 chr4 45242058 45242253 -110387867 + B3 SINE B2 2 195 0 6 930 648 193 18 0 chr4 45242269 45242383 -110387737 + PB1D10 SINE Alu 2 117 0 6 930 362 21 0 21 chr4 45243027 45243075 -110387045 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 930 274 257 84 56 chr4 45243407 45243514 -110386606 - MIRc SINE MIR -70 198 89 6 930 499 217 36 45 chr4 45243548 45243659 -110386461 - B3 SINE B2 -9 207 98 6 930 243 265 65 58 chr4 45243670 45243790 -110386330 + PB1D9 SINE Alu 1 127 -22 6 930 1075 186 16 38 chr4 45244014 45244298 -110385822 + MTC LTR MaLR 1 408 -13 6 930 255 61 0 0 chr4 45244621 45244654 -110385466 + (CCCCCT)n Simple_repeat Simple_repeat 3 35 0 6 930 363 315 82 102 chr4 45244654 45244958 -110385162 - L1MB5 LINE L1 -162 6012 5715 6 930 226 207 70 130 chr4 45245206 45245306 -110384814 - L1M4 LINE L1 -413 5771 5678 6 930 412 290 102 7 chr4 45245286 45245506 -110384614 - L1MB5 LINE L1 -2339 5656 5417 6 930 442 268 0 99 chr4 45245532 45245673 -110384447 - ID_B1 SINE B4 -3 221 95 6 930 656 248 125 43 chr4 45245675 45245869 -110384251 - MTE2a LTR MaLR 0 379 174 6 930 311 23 47 0 chr4 45245869 45245912 -110384208 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 6 930 656 257 163 40 chr4 45245912 45245986 -110384134 - MTE2a LTR MaLR -206 173 67 6 930 221 329 75 96 chr4 45245956 45245980 -110384140 + B4A SINE B4 74 145 -147 6 930 509 186 146 46 chr4 45245980 45246110 -110384010 + B1_Mur1 SINE Alu 6 148 -1 6 930 221 329 75 96 chr4 45246110 45246144 -110383976 + B4A SINE B4 146 257 -35 6 930 234 242 0 46 chr4 45246210 45246275 -110383845 - L1MB5 LINE L1 -737 5437 5376 6 930 539 215 98 91 chr4 45246883 45247026 -110383094 - B1_Mur1 SINE Alu -5 144 1 6 930 771 184 7 20 chr4 45247081 45247231 -110382889 - B1_Mur3 SINE Alu 0 149 2 6 930 396 329 72 40 chr4 45247254 45247380 -110382740 + RSINE1 SINE B4 9 141 -24 6 930 707 9 62 0 chr4 45247380 45247492 -110382628 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 930 396 329 72 40 chr4 45247492 45247517 -110382603 + RSINE1 SINE B4 142 165 0 6 930 216 135 0 0 chr4 45247533 45247570 -110382550 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 6 930 982 193 62 5 chr4 45247598 45247791 -110382329 - B3 SINE B2 0 216 13 6 930 1789 115 176 8 chr4 45248187 45248563 -110381557 + L1_Mur2 LINE L1 2940 3378 -2499 6 930 438 214 0 82 chr4 45248672 45248769 -110381351 - PB1D9 SINE Alu -1 119 31 6 930 794 108 115 8 chr4 45248771 45248901 -110381219 - B1_Mur4 SINE Alu -5 145 2 6 930 353 281 12 0 chr4 45249173 45249255 -110380865 + B4A SINE B4 139 221 -71 6 930 21 0 0 0 chr4 45249255 45249276 -110380844 + AT_rich Low_complexity Low_complexity 1 21 0 6 930 287 164 189 14 chr4 45249343 45249417 -110380703 + L1MA6 LINE L1 6200 6286 -14 6 930 266 278 0 0 chr4 45249446 45249500 -110380620 + B4A SINE B4 216 269 -23 6 930 261 0 0 0 chr4 45249500 45249529 -110380591 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 930 1265 28 0 0 chr4 45249761 45249904 -110380216 + B1_Mus1 SINE Alu 1 143 -5 6 930 216 292 219 62 chr4 45250440 45250454 -110379666 - ID_B1 SINE B4 -13 211 181 6 930 279 169 339 0 chr4 45250454 45250519 -110379601 - B1F1 SINE Alu -39 110 24 6 930 216 292 219 62 chr4 45250519 45250557 -110379563 - ID_B1 SINE B4 -13 180 75 6 930 275 338 25 0 chr4 45250557 45250637 -110379483 + ID4 SINE ID 2 83 0 6 930 276 250 127 155 chr4 45251932 45252074 -110378046 + ID_B1 SINE B4 86 223 -1 6 930 312 299 55 94 chr4 45252078 45252259 -110377861 + B4 SINE B4 1 174 -118 6 930 436 149 89 4 chr4 45252295 45252383 -110377737 + B1_Mur4 SINE Alu 2 93 -56 6 930 360 0 0 0 chr4 45252516 45252556 -110377564 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 930 952 150 7 7 chr4 45252560 45252708 -110377412 + B3 SINE B2 66 213 -3 6 930 1300 77 16 16 chr4 45252782 45252968 -110377152 + B2_Mm2 SINE B2 3 188 -7 6 930 672 218 33 53 chr4 45253103 45253253 -110376867 - ID_B1 SINE B4 0 224 78 6 930 267 93 0 0 chr4 45253685 45253728 -110376392 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 930 781 38 0 19 chr4 45253816 45253923 -110376197 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 930 779 247 19 58 chr4 45254092 45254298 -110375822 - B3 SINE B2 -7 209 12 6 930 233 330 45 0 chr4 45254341 45254429 -110375691 - PB1 SINE Alu -19 108 17 6 930 815 240 58 37 chr4 45254463 45254653 -110375467 + B3A SINE B2 5 198 0 6 930 390 264 45 0 chr4 45254669 45254779 -110375341 - PB1D10 SINE Alu -2 115 1 6 930 377 39 20 0 chr4 45254810 45254861 -110375259 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 930 637 243 57 0 chr4 45255682 45255824 -110374296 + B3A SINE B2 2 152 -46 6 930 483 18 0 0 chr4 45255824 45255880 -110374240 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 930 258 56 0 0 chr4 45255883 45255919 -110374201 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 6 930 637 243 57 0 chr4 45255919 45255949 -110374171 + B3A SINE B2 153 183 -15 6 930 230 253 101 0 chr4 45256253 45256332 -110373788 + PB1D10 SINE Alu 30 116 -1 6 930 3896 131 40 65 chr4 45257721 45258450 -110371670 + RMER6A LTR ERVK 1 711 -45 6 930 850 182 8 3 chr4 45258452 45258612 -110371508 + RMER6A LTR ERVK 619 756 0 6 930 447 52 0 0 chr4 45259551 45259609 -110370511 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 930 270 248 65 123 chr4 45259937 45259956 -110370164 - B1_Mur2 SINE Alu -17 132 112 6 930 306 0 0 0 chr4 45259956 45259990 -110370130 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 6 930 270 248 65 123 chr4 45259990 45260108 -110370012 - B1_Mur2 SINE Alu -38 111 3 6 930 658 236 89 18 chr4 45260108 45260158 -110369962 - ID_B1 SINE B4 -12 212 33 6 930 1333 73 28 6 chr4 45260299 45260478 -110369642 + B2_Mm2 SINE B2 1 183 -12 6 930 1313 14 0 0 chr4 45260492 45260639 -110369481 - B1_Mus2 SINE Alu 0 147 1 6 930 207 0 0 0 chr4 45260669 45260692 -110369428 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 930 207 0 0 0 chr4 45260921 45260944 -110369176 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 6 930 272 36 88 18 chr4 45261257 45261314 -110368806 + (TGGGGG)n Simple_repeat Simple_repeat 5 65 0 6 930 471 233 0 0 chr4 45261727 45261903 -110368217 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 930 304 170 0 36 chr4 45261914 45261969 -110368151 + HAL1-3A_ME LINE L1 1976 2028 -830 6 930 222 37 0 0 chr4 45261977 45262004 -110368116 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 930 1253 48 0 0 chr4 45262677 45262824 -110367296 - B1_Mm SINE Alu 0 147 1 6 930 28 0 0 0 chr4 45262900 45262928 -110367192 + AT_rich Low_complexity Low_complexity 1 28 0 6 930 537 259 34 54 chr4 45262941 45263088 -110367032 + B1F SINE Alu 6 149 0 6 930 359 238 218 0 chr4 45263152 45263253 -110366867 + B1_Mur2 SINE Alu 1 123 -26 6 930 510 163 33 0 chr4 45263415 45263507 -110366613 + ID_B1 SINE B4 130 224 0 6 930 419 333 0 61 chr4 45263693 45263824 -110366296 + RSINE1 SINE B4 43 165 0 6 930 469 82 230 20 chr4 45263871 45263971 -110366149 - Lx2A LINE L1 -3 7005 6885 6 930 379 313 96 24 chr4 45264875 45265042 -110365078 - B3 SINE B2 -1 215 37 6 930 814 169 0 29 chr4 45265060 45265200 -110364920 - B1_Mur2 SINE Alu -2 147 12 6 930 232 182 0 0 chr4 45265209 45265253 -110364867 - B3A SINE B2 -154 44 1 6 930 21 0 0 0 chr4 45265279 45265300 -110364820 + AT_rich Low_complexity Low_complexity 1 21 0 6 930 182 357 9 75 chr4 45266020 45266126 -110363994 + MIRm SINE MIR 38 136 -140 6 930 365 337 114 26 chr4 45266718 45266989 -110363131 - L3 LINE CR1 -441 4048 3754 7 930 302 314 0 19 chr4 45267603 45267707 -110362413 + BC1_Mm scRNA scRNA 11 112 -40 7 930 303 313 141 53 chr4 45267710 45267916 -110362204 - L3 LINE CR1 -1021 3468 3245 7 930 216 0 0 0 chr4 45268002 45268026 -110362094 + (T)n Simple_repeat Simple_repeat 1 24 0 7 930 185 375 31 0 chr4 45268843 45268907 -110361213 - MIRc SINE MIR -120 148 83 7 930 1001 123 7 7 chr4 45268977 45269124 -110360996 - B1_Mus1 SINE Alu -1 147 1 7 930 460 65 0 25 chr4 45269153 45269232 -110360888 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 930 243 0 0 0 chr4 45269342 45269369 -110360751 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 930 309 26 0 0 chr4 45269610 45269648 -110360472 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 930 22 0 0 0 chr4 45270169 45270191 -110359929 + AT_rich Low_complexity Low_complexity 1 22 0 7 930 252 244 44 89 chr4 45270280 45270415 -110359705 - MIRc SINE MIR -123 145 14 7 930 555 171 15 8 chr4 45270553 45270683 -110359437 + GA-rich Low_complexity Low_complexity 3 133 0 7 930 372 215 134 81 chr4 45270683 45270782 -110359338 - B3 SINE B2 -75 141 27 7 930 213 121 0 0 chr4 45270782 45270815 -110359305 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 7 930 1278 27 0 0 chr4 45270815 45270962 -110359158 - B1_Mus1 SINE Alu 0 148 2 7 930 226 100 0 0 chr4 45271433 45271463 -110358657 - U2 snRNA snRNA -155 33 4 7 930 3828 72 16 2 chr4 45271645 45272161 -110357959 + L1_Mus3 LINE L1 6116 6638 0 7 930 24 0 0 0 chr4 45272547 45272571 -110357549 + AT_rich Low_complexity Low_complexity 1 24 0 7 930 1527 205 92 21 chr4 45273206 45273595 -110356525 - MTD LTR MaLR -1 418 2 7 930 863 154 14 20 chr4 45274239 45274385 -110355735 - B1_Mus2 SINE Alu -1 146 2 7 930 311 264 15 104 chr4 45274930 45275065 -110355055 - MIRc SINE MIR -58 210 88 7 930 1467 79 0 5 chr4 45275358 45275549 -110354571 - B2_Mm2 SINE B2 -5 190 1 7 930 357 62 0 0 chr4 45275795 45275843 -110354277 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 930 1964 175 99 47 chr4 45275967 45276453 -110353667 - RLTR11A LTR ERVK -17 511 1 7 930 286 277 63 56 chr4 45276656 45276782 -110353338 - MIRb SINE MIR -28 240 114 7 930 521 262 76 65 chr4 45277235 45277419 -110352701 + ID_B1 SINE B4 39 224 0 7 930 999 63 0 0 chr4 45277784 45277910 -110352210 + B1_Mus1 SINE Alu 21 146 -2 7 930 282 39 0 55 chr4 45277911 45277966 -110352154 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 7 930 479 213 53 0 chr4 45278085 45278179 -110351941 + PB1D7 SINE Alu 5 103 -17 7 930 790 265 43 11 chr4 45278197 45278384 -110351736 - B3A SINE B2 -4 194 2 7 930 942 174 0 0 chr4 45278404 45278548 -110351572 - B1_Mur4 SINE Alu -6 144 1 7 930 1711 93 4 0 chr4 45278734 45278959 -110351161 + URR1A DNA MER1_type 1 226 0 7 930 263 179 54 0 chr4 45278974 45279030 -110351090 - MER58B DNA MER1_type -23 318 260 7 930 613 277 25 12 chr4 45279277 45279438 -110350682 + RSINE1 SINE B4 3 165 0 7 930 251 237 17 0 chr4 45279565 45279624 -110350496 + L2b LINE L2 3306 3365 -10 7 930 2502 127 68 2 chr4 45279863 45280257 -110349863 + MTC LTR MaLR 1 420 -1 7 930 257 244 0 0 chr4 45280639 45280684 -110349436 + ID4 SINE ID 27 71 -12 7 930 251 217 61 78 chr4 45280901 45281016 -110349104 - MIRb SINE MIR -32 236 124 7 930 681 269 112 85 chr4 45282150 45282479 -110347641 - ORR1E LTR MaLR -19 340 3 7 930 585 0 0 0 chr4 45283275 45283340 -110346780 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 7 930 792 134 67 7 chr4 45283344 45283479 -110346641 - B1_Mur3 SINE Alu -6 143 1 7 930 423 0 0 0 chr4 45283892 45283939 -110346181 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 930 398 152 0 0 chr4 45284727 45284786 -110345334 + ID4 SINE ID 14 72 -11 7 930 554 313 61 35 chr4 45284786 45284992 -110345128 + RSINE1 SINE B4 13 285 -7 7 930 2037 145 4 148 chr4 45285282 45285742 -110344378 - ORR1B1 LTR MaLR 0 394 1 7 930 215 312 39 13 chr4 45286386 45286464 -110343656 - L2c LINE L2 -14 3373 3294 7 930 571 179 66 0 chr4 45286580 45286686 -110343434 - ID_B1 SINE B4 -12 212 100 7 930 554 270 109 14 chr4 45286679 45286859 -110343261 + B3A SINE B2 19 214 -2 7 930 359 279 10 0 chr4 45286983 45287087 -110343033 + PB1D10 SINE Alu 13 117 0 7 930 382 308 129 30 chr4 45288745 45288946 -110341174 - MER63B DNA AcHobo -7 429 209 7 930 333 306 42 67 chr4 45288966 45289085 -110341035 - MER2 DNA MER2_type 0 345 230 7 930 1790 169 131 23 chr4 45289090 45289442 -110340678 - RMER4A LTR ERVK 0 466 77 7 930 433 259 41 20 chr4 45289808 45289954 -110340166 - RLTR42-int LTR ERVK -4135 1387 1239 7 930 225 316 12 25 chr4 45290106 45290187 -110339933 - MER2 DNA MER2_type -191 154 75 7 930 2511 48 191 3 chr4 45290623 45290958 -110339162 - MTB LTR MaLR -2 398 1 7 930 207 330 117 0 chr4 45292729 45292823 -110337297 - L2c LINE L2 -233 3154 3050 7 930 287 199 18 0 chr4 45293665 45293730 -110336390 - B1_Mur2 SINE Alu -20 129 59 7 930 2348 75 6 13 chr4 45293733 45294044 -110336076 + L1_Mus3 LINE L1 6311 6619 -19 7 930 278 50 0 24 chr4 45294044 45294085 -110336035 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 930 271 330 9 72 chr4 45294394 45294505 -110335615 - MER5B DNA MER1_type -11 167 64 7 930 995 225 14 32 chr4 45295068 45295288 -110334832 - B3 SINE B2 0 216 1 7 930 1146 124 0 3 chr4 45295298 45296010 -110334110 + (TG)n Simple_repeat Simple_repeat 1 709 0 7 930 292 301 27 14 chr4 45296079 45296153 -110333967 + ID4_ SINE ID 2 76 -7 7 930 260 226 65 0 chr4 45296271 45296333 -110333787 - MIR SINE MIR -109 153 88 7 930 26 82 0 0 chr4 45299017 45299078 -110331042 + AT_rich Low_complexity Low_complexity 1 61 0 7 930 1220 55 0 0 chr4 45299081 45299226 -110330894 + B1_Mus1 SINE Alu 2 146 -2 7 930 617 115 10 0 chr4 45299429 45299525 -110330595 - URR1B DNA MER1_type 0 225 129 7 930 297 0 0 0 chr4 45299857 45299890 -110330230 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 930 925 80 35 48 chr4 45300548 45300693 -110329427 - B1_Mus1 SINE Alu -1 147 5 7 930 795 174 7 43 chr4 45301289 45301427 -110328693 - B1_Mur2 SINE Alu -5 144 12 7 930 593 246 170 0 chr4 45301599 45301770 -110328350 + B3 SINE B2 3 202 -14 7 930 1295 34 0 0 chr4 45302275 45302422 -110327698 + B1_Mm SINE Alu 1 147 0 7 930 267 54 0 0 chr4 45302422 45302459 -110327661 + (A)n Simple_repeat Simple_repeat 1 37 0 7 930 182 0 107 0 chr4 45302474 45302502 -110327618 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 7 930 252 158 0 0 chr4 45302820 45302858 -110327262 + B3 SINE B2 4 41 -175 7 930 4588 6 0 0 chr4 45302858 45303351 -110326769 - MT2_Mm LTR ERVL 0 493 1 7 930 293 26 0 0 chr4 45303351 45303389 -110326731 - MERVL-int LTR ERVL 0 5485 5448 7 930 387 144 58 46 chr4 45303389 45303476 -110326644 - ORR1A3-int LTR MaLR -1323 640 553 7 930 46299 15 3 0 chr4 45303476 45308820 -110321300 - MERVL-int LTR ERVL -125 5360 1 7 930 4558 8 0 0 chr4 45308820 45309313 -110320807 - MT2_Mm LTR ERVL 0 493 1 7 930 465 184 0 0 chr4 45309313 45309389 -110320731 + B3 SINE B2 37 112 -104 7 930 472 260 30 0 chr4 45309424 45309524 -110320596 + B3 SINE B2 114 216 0 7 930 424 262 74 22 chr4 45310657 45310819 -110319301 + B3A SINE B2 12 191 -4 7 930 814 107 92 0 chr4 45310826 45310957 -110319163 + B1_Mur3 SINE Alu 6 148 -1 7 930 273 146 0 0 chr4 45310959 45311007 -110319113 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 7 930 615 112 17 93 chr4 45311008 45311126 -110318994 + B1_Mur1 SINE Alu 40 148 -1 7 930 23 0 0 0 chr4 45311131 45311154 -110318966 + AT_rich Low_complexity Low_complexity 1 23 0 7 930 597 277 59 59 chr4 45311353 45311572 -110318548 - ID_B1 SINE B4 -4 220 2 7 930 426 283 17 26 chr4 45311788 45311904 -110318216 - PB1D10 SINE Alu -2 115 1 7 930 721 280 22 75 chr4 45311997 45312225 -110317895 - B3A SINE B2 0 216 1 7 930 260 312 62 10 chr4 45312297 45312394 -110317726 - L2b LINE L2 -18 3357 3256 7 930 724 211 72 7 chr4 45312550 45312703 -110317417 - B3 SINE B2 0 216 54 7 930 215 250 221 0 chr4 45312731 45312799 -110317321 + B1_Mur3 SINE Alu 2 84 -65 7 930 237 286 0 0 chr4 45312993 45313049 -110317071 + MIRm SINE MIR 221 276 0 7 930 267 279 29 0 chr4 45313803 45313871 -110316249 + ID4 SINE ID 8 77 -6 7 930 851 153 28 0 chr4 45314710 45314854 -110315266 + B1_Mur3 SINE Alu 2 149 0 7 930 198 0 0 0 chr4 45314872 45314894 -110315226 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 7 930 923 147 150 13 chr4 45314895 45315129 -110314991 - Lx6 LINE L1 -35 7661 7396 7 930 6278 163 52 48 chr4 45315137 45317099 -110313021 - Lx6 LINE L1 -374 7086 5074 7 930 695 100 39 28 chr4 45317422 45317573 -110312547 - MTA_Mm-int LTR MaLR -1106 152 1 7 930 3365 43 2 2 chr4 45317573 45317969 -110312151 - MTA_Mm LTR MaLR 0 396 1 7 930 316 164 0 0 chr4 45317991 45318046 -110312074 + B1_Mur4 SINE Alu 1 55 -95 7 930 252 0 0 0 chr4 45318906 45318934 -110311186 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 930 438 270 100 31 chr4 45318935 45319065 -110311055 - RSINE1 SINE B4 -24 141 3 7 930 1043 87 82 50 chr4 45319112 45319294 -110310826 + B2_Mm2 SINE B2 2 189 -6 7 930 260 244 96 12 chr4 45319276 45319359 -110310761 + MER2 DNA MER2_type 60 149 -196 7 930 647 217 101 0 chr4 45319359 45319488 -110310632 + B1F SINE Alu 1 142 -7 7 930 1305 27 0 0 chr4 45319515 45319662 -110310458 + B1_Mus2 SINE Alu 1 147 0 7 930 473 277 70 93 chr4 45319673 45319888 -110310232 + MER2 DNA MER2_type 136 345 0 7 930 596 179 111 0 chr4 45321483 45321600 -110308520 - B1_Mur4 SINE Alu -7 143 14 7 930 1057 189 81 5 chr4 45321986 45322183 -110307937 - B3 SINE B2 -4 212 1 8 930 550 72 77 13 chr4 45322814 45322969 -110307151 + (TA)n Simple_repeat Simple_repeat 1 165 0 8 930 2520 220 42 102 chr4 45323816 45325967 -110304153 - Lx5 LINE L1 -43 7417 5543 8 930 1358 79 17 0 chr4 45325968 45326145 -110303975 + B2_Mm2 SINE B2 2 181 -14 8 930 5744 17 0 0 chr4 45326145 45326783 -110303337 - L1Md_A LINE L1 -3 6579 5942 8 930 791 85 0 56 chr4 45326783 45326908 -110303212 + B2_Mm1t SINE B2 76 193 0 8 930 708 194 0 28 chr4 45326909 45327052 -110303068 - Lx5 LINE L1 -329 5551 5413 8 930 204 355 111 12 chr4 45327527 45327698 -110302422 + L2b LINE L2 3053 3240 -135 8 930 205 296 0 0 chr4 45329260 45329304 -110300816 + MIRb SINE MIR 205 248 -20 8 930 21 36 0 0 chr4 45329500 45329528 -110300592 + AT_rich Low_complexity Low_complexity 1 28 0 8 930 483 18 0 0 chr4 45330111 45330167 -110299953 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 930 231 344 75 11 chr4 45330176 45330270 -110299850 - PB1 SINE Alu -5 122 23 8 930 285 308 78 44 chr4 45330294 45330498 -110299622 + Lx8 LINE L1 7254 7464 -9 8 930 323 283 127 42 chr4 45330959 45331077 -110299043 - MER3 DNA MER1_type -72 137 10 8 930 797 290 24 0 chr4 45331267 45331474 -110298646 + B3 SINE B2 2 213 -3 8 930 295 289 134 35 chr4 45333717 45333889 -110296231 - Helitron3Na_Mam RC Helitron -40 446 258 8 930 777 290 151 94 chr4 45334266 45334731 -110295389 + RLTR18 LTR ERVK 1 487 -129 8 930 182 37 37 0 chr4 45334731 45334758 -110295362 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8 930 777 290 151 94 chr4 45334758 45334875 -110295245 + RLTR18 LTR ERVK 488 616 0 8 930 184 203 40 0 chr4 45336189 45336263 -110293857 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 8 930 1962 157 78 27 chr4 45336789 45337173 -110292947 - ORR1B1 LTR MaLR 0 421 1 8 930 615 164 166 57 chr4 45337217 45337392 -110292728 - B3A SINE B2 -4 194 1 8 930 840 204 54 44 chr4 45338343 45338497 -110291623 + ORR1D1 LTR MaLR 3 154 -220 8 930 270 0 0 0 chr4 45338497 45338527 -110291593 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 930 840 204 54 44 chr4 45338527 45338577 -110291543 + ORR1D1 LTR MaLR 155 209 -165 8 930 1697 149 17 110 chr4 45338577 45338833 -110291287 + ORR1A4 LTR MaLR 1 230 -99 8 930 2545 171 29 65 chr4 45338833 45339415 -110290705 - RLTR31_Mm LTR ERVK 0 561 1 8 930 1697 149 17 110 chr4 45339415 45339512 -110290608 + ORR1A4 LTR MaLR 231 321 -8 8 930 11088 132 54 74 chr4 45339516 45341519 -110288601 + ORR1A4-int LTR MaLR 1 1963 0 8 930 1863 148 9 25 chr4 45341519 45341839 -110288281 + ORR1A4 LTR MaLR 15 329 0 8 930 654 256 130 4 chr4 45341990 45342229 -110287891 + L1M4 LINE L1 4084 4352 -1794 8 930 309 246 0 0 chr4 45342231 45342292 -110287828 + ID_B1 SINE B4 164 224 0 8 930 342 212 85 0 chr4 45342685 45342779 -110287341 + PB1D10 SINE Alu 33 132 -15 8 930 586 244 23 8 chr4 45342803 45342935 -110287185 - B1_Mur1 SINE Alu -1 148 15 8 930 275 85 21 0 chr4 45342963 45343010 -110287110 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 8 930 454 241 92 7 chr4 45343010 45343152 -110286968 + L1M4 LINE L1 4856 5009 -1137 8 930 226 253 186 40 chr4 45343190 45343367 -110286753 + L1M4 LINE L1 4957 5159 -987 8 930 502 255 47 54 chr4 45343546 45343695 -110286425 + RSINE1 SINE B4 3 150 -15 8 930 29 0 0 0 chr4 45343724 45343753 -110286367 + AT_rich Low_complexity Low_complexity 1 29 0 8 930 387 257 298 20 chr4 45343755 45343906 -110286214 + B3A SINE B2 1 193 -5 8 930 364 211 10 40 chr4 45343925 45344024 -110286096 + L1M4 LINE L1 5320 5415 -1029 8 930 3865 42 2 5 chr4 45344267 45344764 -110285356 + LTRIS_Mus LTR ERV1 104 587 0 8 930 1087 232 140 21 chr4 45344883 45345204 -110284916 + ORR1D2 LTR MaLR 1 370 0 8 930 1784 151 131 12 chr4 45345269 45345612 -110284508 - ORR1C2 LTR MaLR 0 384 1 8 930 663 272 32 65 chr4 45345616 45345801 -110284319 + B3 SINE B2 1 179 -37 8 930 992 139 7 14 chr4 45345832 45345978 -110284142 + B1_Mus2 SINE Alu 2 146 -1 8 930 469 209 444 33 chr4 45346250 45346403 -110283717 - B3 SINE B2 0 216 1 8 930 213 311 144 20 chr4 45346424 45346572 -110283548 + MIRb SINE MIR 3 159 -103 8 930 288 0 0 0 chr4 45347431 45347463 -110282657 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 930 1065 70 7 0 chr4 45347686 45347828 -110282292 + B1_Mus1 SINE Alu 6 148 0 8 930 243 0 0 0 chr4 45347832 45347859 -110282261 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 930 189 107 0 0 chr4 45347864 45347892 -110282228 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 8 930 752 122 0 0 chr4 45347903 45348010 -110282110 + B2_Mm2 SINE B2 1 107 -88 8 930 251 329 66 40 chr4 45348931 45349083 -110281037 - MLT1L LTR MaLR -14 596 441 8 930 330 298 238 6 chr4 45349218 45349390 -110280730 - MLT1L LTR MaLR -362 248 37 8 930 299 293 76 35 chr4 45349460 45349605 -110280515 + MIRc SINE MIR 68 218 -50 8 930 372 22 0 0 chr4 45349670 45349715 -110280405 + (TTG)n Simple_repeat Simple_repeat 1 45 0 8 930 272 238 16 0 chr4 45349715 45349778 -110280342 - B1F SINE Alu -13 134 72 8 930 2158 93 29 0 chr4 45349785 45350095 -110280025 + ORR1A2 LTR MaLR 1 319 -8 8 930 218 347 20 0 chr4 45350105 45350154 -110279966 - PB1 SINE Alu -76 51 2 8 930 548 238 9 0 chr4 45350519 45350624 -110279496 - B1F SINE Alu -41 108 3 8 930 1273 114 11 6 chr4 45350718 45350895 -110279225 + B2_Mm1t SINE B2 2 179 -14 8 931 288 91 355 74 chr4 45350961 45351071 -110279049 + B2_Mm2 SINE B2 47 187 -8 8 931 498 66 330 28 chr4 45351218 45351327 -110278793 - B2_Mm2 SINE B2 -7 188 47 8 931 366 235 12 24 chr4 45351327 45351410 -110278710 - B1F SINE Alu -22 127 46 8 931 680 277 19 0 chr4 45352011 45352166 -110277954 - B3A SINE B2 -38 160 3 8 931 667 205 171 28 chr4 45352217 45352393 -110277727 - B3 SINE B2 -14 202 2 8 931 214 184 0 20 chr4 45352698 45352748 -110277372 + A-rich Low_complexity Low_complexity 2 50 0 8 931 1225 55 0 33 chr4 45352922 45353072 -110277048 - B1_Mus1 SINE Alu 0 148 4 8 931 259 109 65 5 chr4 45353079 45353137 -110276983 - B2_Mm2 SINE B2 -135 63 1 8 931 1333 81 32 16 chr4 45353237 45353425 -110276695 - B2_Mm2 SINE B2 -3 192 2 8 931 412 272 12 0 chr4 45353714 45353795 -110276325 - ID SINE ID -141 83 2 8 931 21 89 0 0 chr4 45355367 45355423 -110274697 + GC_rich Low_complexity Low_complexity 1 56 0 8 931 2401 151 38 13 chr4 45356880 45357277 -110272843 - MTB_Mm LTR MaLR 0 407 1 8 931 256 305 0 0 chr4 45357346 45357405 -110272715 - B4A SINE B4 -197 95 37 8 931 601 291 81 0 chr4 45357472 45357620 -110272500 + RSINE1 SINE B4 2 161 -4 8 931 552 266 56 8 chr4 45357818 45357943 -110272177 - RSINE1 SINE B4 -31 134 4 8 931 838 73 16 47 chr4 45357981 45358053 -110272067 - B1_Mus2 SINE Alu 0 147 74 8 931 3692 76 28 2 chr4 45358053 45358516 -110271604 - MT2C_Mm LTR ERVL 0 475 1 8 931 838 73 16 47 chr4 45358516 45358572 -110271548 - B1_Mus2 SINE Alu -74 73 23 8 931 480 355 149 12 chr4 45358871 45359199 -110270921 + L1MEg LINE L1 75 447 -5637 8 931 436 204 0 117 chr4 45359206 45359221 -110270899 + MT2B LTR ERVL 153 263 -336 8 931 845 63 9 0 chr4 45359221 45359332 -110270788 + B1_Mus1 SINE Alu 1 112 -36 8 931 2109 34 0 0 chr4 45359334 45359573 -110270547 - LSU-rRNA_Hsa rRNA rRNA -1128 3907 3669 8 931 279 140 0 0 chr4 45359588 45359638 -110270482 + (A)n Simple_repeat Simple_repeat 1 50 0 8 931 201 74 0 0 chr4 45359646 45359673 -110270447 + (CTA)n Simple_repeat Simple_repeat 2 28 0 8 931 500 227 192 8 chr4 45359677 45359797 -110270323 + B1F SINE Alu 1 142 -7 8 931 381 294 281 0 chr4 45360010 45360171 -110269949 - B4A SINE B4 -86 206 1 8 931 280 249 38 59 chr4 45360222 45360374 -110269746 - B3 SINE B2 -30 186 17 8 931 547 277 106 5 chr4 45360384 45360591 -110269529 + MER44A DNA MER2_type 107 334 -5 8 931 21 0 0 0 chr4 45362365 45362386 -110267734 + AT_rich Low_complexity Low_complexity 1 21 0 8 931 481 308 142 12 chr4 45362386 45362731 -110267389 - L1MC4a LINE L1 -1703 6179 5790 8 931 250 234 0 59 chr4 45362914 45362982 -110267138 + BC1_Mm scRNA scRNA 28 91 -61 8 931 931 251 44 15 chr4 45363013 45363219 -110266901 + ID_B1 SINE B4 6 217 -7 8 931 195 42 0 0 chr4 45363231 45363255 -110266865 + (TAA)n Simple_repeat Simple_repeat 2 25 0 8 931 24 0 0 0 chr4 45363519 45363543 -110266577 + AT_rich Low_complexity Low_complexity 1 24 0 8 931 1024 126 114 0 chr4 45363685 45363860 -110266260 + B2_Mm2 SINE B2 1 195 0 8 931 937 166 180 11 chr4 45363871 45364054 -110266066 + B3 SINE B2 1 214 -2 8 931 1068 69 61 0 chr4 45364072 45364203 -110265917 + B1_Mus1 SINE Alu 3 141 -7 8 931 229 26 26 26 chr4 45364203 45364242 -110265878 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 931 891 159 27 14 chr4 45364547 45364694 -110265426 + B1_Mur2 SINE Alu 1 149 0 8 931 587 241 65 14 chr4 45365559 45365698 -110264422 + B1_Mus2 SINE Alu 1 146 -1 8 931 488 188 12 0 chr4 45365704 45365789 -110264331 + 4.5SRNA scRNA scRNA 6 91 -3 8 931 682 169 177 0 chr4 45365800 45365924 -110264196 + B1_Mus2 SINE Alu 1 146 -1 8 931 281 283 174 23 chr4 45366193 45366457 -110263663 + L1M5 LINE L1 4823 5126 -1020 8 931 301 257 147 10 chr4 45367012 45367114 -110263006 + L2a LINE L2 3307 3422 -4 8 931 309 311 11 11 chr4 45367190 45367281 -110262839 + L1ME3B LINE L1 6021 6111 -129 8 931 22 35 0 0 chr4 45367383 45367412 -110262708 + AT_rich Low_complexity Low_complexity 1 29 0 8 931 249 268 110 55 chr4 45367493 45367639 -110262481 - Tigger15a DNA TcMar -387 328 175 8 931 545 120 0 12 chr4 45367630 45367714 -110262406 + B1_Mus2 SINE Alu 65 147 0 8 931 219 306 14 0 chr4 45367786 45367858 -110262262 - MIRb SINE MIR -8 260 188 8 931 553 241 9 9 chr4 45367889 45367998 -110262122 + RSINE1 SINE B4 29 137 -28 8 931 222 37 0 0 chr4 45368011 45368038 -110262082 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 931 411 250 65 28 chr4 45368059 45368166 -110261954 - B1F SINE Alu -6 143 33 9 931 1053 140 204 17 chr4 45368520 45368701 -110261419 - B3 SINE B2 -1 215 1 9 931 186 40 0 0 chr4 45368964 45368976 -110261144 + (TG)n Simple_repeat Simple_repeat 1 12 0 9 931 384 59 0 0 chr4 45368976 45369027 -110261093 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 931 186 40 0 0 chr4 45369027 45369039 -110261081 + (TG)n Simple_repeat Simple_repeat 1 12 0 9 931 195 42 0 0 chr4 45369079 45369103 -110261017 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 931 480 259 0 37 chr4 45369765 45369937 -110260183 - ID_B1 SINE B4 -2 222 14 9 931 229 229 46 62 chr4 45369879 45369944 -110260176 - BC1_Mm scRNA scRNA -85 67 4 9 931 547 234 8 61 chr4 45370415 45370547 -110259573 + B1_Mur1 SINE Alu 2 126 -23 9 931 521 250 285 6 chr4 45370847 45371012 -110259108 + ID_B1 SINE B4 1 211 -13 9 931 339 65 0 0 chr4 45371041 45371087 -110259033 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 9 931 183 80 0 0 chr4 45371087 45371112 -110259008 + (CAAG)n Simple_repeat Simple_repeat 4 28 0 9 931 303 21 0 96 chr4 45371205 45371257 -110258863 + B1_Mur4 SINE Alu 104 150 0 9 931 332 290 24 24 chr4 45371380 45371507 -110258613 + B4A SINE B4 166 292 0 9 931 228 257 86 83 chr4 45371517 45371650 -110258470 - L2c LINE L2 -156 3219 3077 9 931 288 257 78 60 chr4 45371675 45371791 -110258329 + 5S rRNA rRNA 3 120 -1 9 931 943 262 4 18 chr4 45372988 45373213 -110256907 + ID_B1 SINE B4 3 224 0 9 931 863 130 0 8 chr4 45373229 45373361 -110256759 + B1_Mur3 SINE Alu 6 136 -13 9 931 1773 31 0 0 chr4 45373636 45373828 -110256292 - B2_Mm1a SINE B2 0 193 2 9 931 1328 27 0 0 chr4 45373866 45374013 -110256107 + B1_Mm SINE Alu 1 147 0 9 931 26 64 0 0 chr4 45374062 45374109 -110256011 + AT_rich Low_complexity Low_complexity 1 47 0 9 931 340 276 22 33 chr4 45374829 45374919 -110255201 + PB1D10 SINE Alu 21 109 -8 9 931 355 306 0 14 chr4 45374932 45375005 -110255115 + ID4_ SINE ID 2 73 -10 9 931 280 274 44 67 chr4 45374944 45375034 -110255086 + B4 SINE B4 13 100 -192 9 931 382 277 183 22 chr4 45375072 45375301 -110254819 + L1MC LINE L1 2250 2515 -3631 9 931 568 246 101 62 chr4 45375519 45375697 -110254423 + B3A SINE B2 1 185 -13 9 931 2562 63 22 0 chr4 45375717 45376032 -110254088 - L1_Mus2 LINE L1 0 6566 6245 9 931 21 0 0 0 chr4 45376461 45376482 -110253638 + AT_rich Low_complexity Low_complexity 1 21 0 9 931 975 79 0 0 chr4 45376503 45376630 -110253490 + B1_Mus1 SINE Alu 1 127 -21 9 931 285 283 0 24 chr4 45376921 45377019 -110253101 + L1M4 LINE L1 3453 3554 -2592 9 931 1276 100 28 0 chr4 45377095 45377275 -110252845 + B2_Mm1t SINE B2 1 185 -8 9 931 1163 88 0 20 chr4 45377489 45377639 -110252481 + B1_Mm SINE Alu 1 147 0 9 931 316 256 241 20 chr4 45377718 45378017 -110252103 + L1M4 LINE L1 3970 4334 -1812 9 931 1250 80 0 0 chr4 45378024 45378186 -110251934 - B2_Mm2 SINE B2 -30 165 4 9 931 346 191 99 38 chr4 45378318 45378449 -110251671 + L1M4 LINE L1 4298 4436 -1710 9 931 22 0 0 0 chr4 45378526 45378548 -110251572 + AT_rich Low_complexity Low_complexity 1 22 0 9 931 258 241 0 0 chr4 45378610 45378664 -110251456 + L1MC LINE L1 4497 4550 -1596 9 931 293 229 0 16 chr4 45378768 45378830 -110251290 - B1_Mur4 SINE Alu 0 150 90 9 931 609 262 80 45 chr4 45378879 45379231 -110250889 + L1MB8 LINE L1 5799 6162 -16 9 931 1107 85 36 12 chr4 45379299 45379466 -110250654 - B2_Mm2 SINE B2 -9 186 16 9 931 740 235 72 43 chr4 45379474 45379683 -110250437 - ID_B1 SINE B4 -2 222 8 9 931 189 0 0 0 chr4 45379698 45379719 -110250401 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 9 931 1291 41 0 0 chr4 45379719 45379865 -110250255 - B1_Mm SINE Alu -1 146 1 9 931 301 278 61 15 chr4 45380040 45380221 -110249899 - MER58A DNA MER1_type 0 224 2 9 931 764 262 176 55 chr4 45380298 45380795 -110249325 + L1MA8 LINE L1 5566 6131 -160 9 931 764 171 62 0 chr4 45380795 45380924 -110249196 + B1_Mur2 SINE Alu 5 141 -8 9 931 764 262 176 55 chr4 45380924 45381016 -110249104 + L1MA8 LINE L1 6132 6232 -59 9 931 422 253 13 0 chr4 45381016 45381095 -110249025 + ID4 SINE ID 3 82 -1 9 931 764 262 176 55 chr4 45381095 45381145 -110248975 + L1MA8 LINE L1 6233 6284 -7 9 931 476 276 38 17 chr4 45381428 45381560 -110248560 - ID_B1 SINE B4 -69 223 77 9 931 440 277 26 18 chr4 45381555 45381669 -110248451 - B1F SINE Alu 0 149 35 9 931 522 227 0 0 chr4 45381806 45381903 -110248217 + B1F2 SINE Alu 46 142 -7 9 931 241 238 0 160 chr4 45381837 45381912 -110248208 + B4 SINE B4 166 228 -64 9 931 301 277 73 21 chr4 45381929 45382025 -110248095 + HAL1 LINE L1 96 196 -2311 9 931 979 239 10 5 chr4 45382076 45382269 -110247851 + B3A SINE B2 4 197 -1 9 931 280 267 22 34 chr4 45382653 45382742 -110247378 + HAL1 LINE L1 791 878 -1629 9 931 275 333 42 0 chr4 45382957 45383029 -110247091 + RSINE1 SINE B4 11 85 -80 9 931 305 79 0 0 chr4 45383013 45383051 -110247069 + B1_Mus2 SINE Alu 79 116 -31 9 931 1570 58 11 0 chr4 45383778 45383968 -110246152 - B2_Mm1t SINE B2 0 193 2 9 931 399 232 12 0 chr4 45384316 45384398 -110245722 + RSINE1 SINE B4 2 84 -81 9 931 777 134 8 25 chr4 45384528 45384650 -110245470 - B1_Mus2 SINE Alu -12 135 16 9 931 1266 41 7 0 chr4 45385009 45385154 -110244966 + B1_Mus1 SINE Alu 2 147 -1 9 931 1640 42 5 16 chr4 45385272 45385464 -110244656 + B2_Mm2 SINE B2 1 190 -5 9 931 183 184 0 0 chr4 45388258 45388296 -110241824 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 9 931 218 366 88 31 chr4 45389305 45389497 -110240623 - MIRb SINE MIR -17 251 49 9 931 681 193 0 8 chr4 45389964 45390084 -110240036 - PB1D9 SINE Alu 0 120 2 9 931 671 210 7 28 chr4 45390369 45390511 -110239609 + B1_Mur1 SINE Alu 11 149 0 9 931 725 222 21 0 chr4 45390803 45390947 -110239173 - B1_Mus1 SINE Alu -1 147 1 9 931 411 327 129 65 chr4 45391037 45391563 -110238557 - Tigger15a DNA TcMar 0 715 156 9 931 1406 51 67 0 chr4 45391975 45392153 -110237967 + B2_Mm2 SINE B2 1 190 -5 9 931 488 214 110 8 chr4 45392477 45392595 -110237525 + L2a LINE L2 3297 3426 0 9 931 216 0 0 0 chr4 45392681 45392705 -110237415 + (T)n Simple_repeat Simple_repeat 1 24 0 9 931 1140 68 0 45 chr4 45393275 45393429 -110236691 - B1_Mus1 SINE Alu 0 148 2 9 931 1762 130 15 58 chr4 45393690 45394016 -110236104 - RLTRETN_Mm LTR ERVK 0 322 11 9 931 9622 134 34 35 chr4 45394021 45396024 -110234096 - MMETn-int LTR ERVK -249 7157 3219 9 931 12818 119 57 40 chr4 45396022 45400125 -110229995 - MMETn-int LTR ERVK -2295 5111 2 9 931 1762 145 15 57 chr4 45400126 45400462 -110229658 - RLTRETN_Mm LTR ERVK 0 322 1 9 931 1337 89 20 20 chr4 45400544 45400739 -110229381 + B2_Mm2 SINE B2 1 195 0 9 931 742 227 0 0 chr4 45400743 45400871 -110229249 - B1_Mur1 SINE Alu -12 137 10 9 931 471 229 0 0 chr4 45401250 45401333 -110228787 + PB1D10 SINE Alu 1 83 -34 9 931 356 281 120 42 chr4 45401412 45401449 -110228671 - MLT1D LTR MaLR -13 492 461 9 931 3539 20 5 0 chr4 45401449 45401843 -110228277 + MTA_Mm LTR MaLR 1 396 0 9 931 356 281 120 42 chr4 45401843 45401972 -110228148 - MLT1D LTR MaLR -45 460 313 9 931 233 29 29 0 chr4 45402195 45402229 -110227891 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 931 1191 41 0 27 chr4 45402229 45402379 -110227741 - B1_Mus1 SINE Alu -2 146 1 9 931 303 127 0 0 chr4 45402774 45402837 -110227283 + (A)n Simple_repeat Simple_repeat 1 63 0 9 931 1149 198 72 38 chr4 45403002 45403265 -110226855 + B4 SINE B4 1 272 -20 9 931 545 198 79 0 chr4 45403316 45403417 -110226703 - PB1D10 SINE Alu 0 117 9 9 931 253 310 10 103 chr4 45403344 45403364 -110226756 - MT2B2 LTR ERVL -345 239 197 9 931 281 271 0 0 chr4 45403364 45403423 -110226697 - B4A SINE B4 -146 146 88 9 931 253 310 10 103 chr4 45403423 45403441 -110226679 - MT2B2 LTR ERVL -345 196 152 9 931 237 292 232 43 chr4 45403507 45403718 -110226402 + ORR1E LTR MaLR 40 290 -69 9 931 223 271 42 28 chr4 45403858 45403930 -110226190 - RSINE1 SINE B4 -91 74 2 9 931 195 125 150 0 chr4 45404289 45404329 -110225791 - MER5A DNA MER1_type -137 52 7 9 931 1264 34 0 7 chr4 45404344 45404492 -110225628 - B1_Mus1 SINE Alu -1 147 1 9 931 307 258 157 75 chr4 45404871 45405005 -110225115 - B1F2 SINE Alu 0 149 5 9 931 776 234 94 20 chr4 45405039 45405240 -110224880 + B3 SINE B2 1 216 0 9 931 276 241 37 25 chr4 45405403 45405484 -110224636 + B4 SINE B4 5 86 -206 9 931 1009 125 20 0 chr4 45406310 45406462 -110223658 + B2_Mm2 SINE B2 3 157 -38 9 931 449 138 12 0 chr4 45406470 45406550 -110223570 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 9 931 1375 76 49 0 chr4 45406959 45407144 -110222976 - B2_Mm2 SINE B2 0 195 2 9 931 371 242 239 12 chr4 45407619 45407782 -110222338 - MTD LTR MaLR -20 399 200 9 931 1058 37 73 7 chr4 45407845 45407982 -110222138 - B1_Mm SINE Alu 0 147 2 9 931 264 265 44 78 chr4 45407986 45408076 -110222044 + B1_Mur1 SINE Alu 28 114 -6 9 931 1477 44 0 6 chr4 45408292 45408475 -110221645 + B2_Mm2 SINE B2 14 195 0 9 931 551 116 0 35 chr4 45408565 45408681 -110221439 + (CA)n Simple_repeat Simple_repeat 1 112 0 9 931 1291 34 0 0 chr4 45409862 45410009 -110220111 + B1_Mus1 SINE Alu 2 148 0 9 931 330 26 0 0 chr4 45410436 45410475 -110219645 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 931 636 116 0 0 chr4 45410512 45410607 -110219513 + BC1_Mm scRNA scRNA 1 95 -57 9 931 300 53 0 0 chr4 45410607 45410645 -110219475 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 9 931 473 211 63 18 chr4 45410669 45410780 -110219340 + PB1D10 SINE Alu 2 117 0 1 931 384 160 78 26 chr4 45410803 45410880 -110219240 + ID4 SINE ID 3 83 0 1 931 429 20 0 0 chr4 45413262 45413312 -110216808 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 931 286 302 181 18 chr4 45413419 45413645 -110216475 + Charlie1a DNA MER1_type 1076 1338 -117 1 931 1222 90 90 0 chr4 45413711 45413888 -110216232 - B2_Mm2 SINE B2 -2 193 1 1 931 269 282 52 52 chr4 45414034 45414150 -110215970 + ID_B1 SINE B4 99 214 -10 1 931 928 137 7 7 chr4 45414256 45414403 -110215717 - B1_Mus1 SINE Alu -1 147 1 1 931 216 0 0 0 chr4 45414424 45414448 -110215672 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1 931 636 164 96 15 chr4 45414454 45414590 -110215530 - B1_Mur4 SINE Alu -1 149 3 1 931 189 0 0 0 chr4 45414617 45414638 -110215482 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 931 748 134 0 40 chr4 45414640 45414764 -110215356 - B1_Mur4 SINE Alu -6 144 26 1 931 397 292 141 12 chr4 45414795 45414965 -110215155 - B3A SINE B2 -6 192 1 1 931 631 197 74 25 chr4 45414992 45415195 -110214925 + L1M2 LINE L1 5267 5479 -833 1 931 324 0 0 0 chr4 45415212 45415248 -110214872 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 931 240 347 10 21 chr4 45415278 45415375 -110214745 + B4 SINE B4 2 97 -195 1 931 1013 184 47 0 chr4 45415394 45415606 -110214514 - URR1A DNA MER1_type 0 226 5 1 931 238 271 51 0 chr4 45415694 45415753 -110214367 + RSINE1 SINE B4 102 163 -2 1 931 257 287 102 0 chr4 45415774 45415882 -110214238 + L1M2 LINE L1 5473 5591 -589 1 931 251 159 0 43 chr4 45416742 45416788 -110213332 - ID SINE ID -142 82 39 1 931 379 319 136 0 chr4 45416836 45417005 -110213115 - Tigger5 DNA MER2_type -2175 231 40 1 931 717 128 25 8 chr4 45417441 45417559 -110212561 - PB1D9 SINE Alu 0 120 1 1 931 391 41 0 0 chr4 45417761 45417810 -110212310 + B1_Mm SINE Alu 97 145 -2 1 931 185 0 40 0 chr4 45417810 45417835 -110212285 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 931 1115 124 51 0 chr4 45417850 45418027 -110212093 + B2_Mm2 SINE B2 1 186 -9 1 931 242 369 64 24 chr4 45418453 45418578 -110211542 - ID_B1 SINE B4 -10 214 85 1 931 420 286 43 26 chr4 45418466 45418581 -110211539 - PB1D10 SINE Alu 0 117 1 1 931 26 0 0 0 chr4 45418601 45418627 -110211493 + AT_rich Low_complexity Low_complexity 1 26 0 1 931 648 139 37 0 chr4 45418627 45418735 -110211385 - PB1D9 SINE Alu -8 112 1 1 931 1637 36 0 10 chr4 45418854 45419049 -110211071 - B2_Mm1a SINE B2 0 193 1 1 931 243 0 0 0 chr4 45419056 45419083 -110211037 + (T)n Simple_repeat Simple_repeat 1 27 0 1 931 579 178 85 0 chr4 45419118 45419236 -110210884 + B1_Mur2 SINE Alu 3 130 -19 1 931 211 171 0 0 chr4 45419351 45419386 -110210734 - B1_Mur1 SINE Alu -15 134 100 1 931 945 121 14 7 chr4 45419790 45419932 -110210188 - B1_Mur3 SINE Alu -6 143 1 1 931 180 0 0 0 chr4 45420023 45420043 -110210077 + (T)n Simple_repeat Simple_repeat 1 20 0 1 931 271 189 57 0 chr4 45420206 45420259 -110209861 + RSINE1 SINE B4 89 144 -21 1 931 213 39 0 0 chr4 45421648 45421674 -110208446 + (CGGGG)n Simple_repeat Simple_repeat 4 29 0 1 931 226 340 60 24 chr4 45422056 45422222 -110207898 + MIRc SINE MIR 9 180 -88 1 931 382 298 0 110 chr4 45422534 45422670 -110207450 - B3A SINE B2 -4 189 68 1 931 785 79 9 0 chr4 45422691 45422805 -110207315 - BC1_Mm scRNA scRNA -37 115 1 1 931 183 42 0 0 chr4 45422805 45422829 -110207291 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 931 1173 41 0 20 chr4 45422830 45422979 -110207141 - B1_Mus2 SINE Alu 0 147 2 1 931 270 200 16 16 chr4 45423035 45423096 -110207024 + RMER30 DNA MER1_type 111 171 -31 1 931 423 148 0 47 chr4 45423218 45423303 -110206817 - RMER17A LTR ERVK -3 748 668 1 931 480 56 70 0 chr4 45423295 45423366 -110206754 - RMER17D LTR ERVK -813 76 1 1 931 542 151 207 16 chr4 45424559 45424680 -110205440 + B1_Mur3 SINE Alu 1 144 -5 1 931 327 146 0 0 chr4 45424680 45424735 -110205385 + (GGA)n Simple_repeat Simple_repeat 3 57 0 1 931 230 313 0 12 chr4 45425469 45425553 -110204567 - ID4 SINE ID 0 83 1 1 931 320 231 25 13 chr4 45425725 45425804 -110204316 + ID4 SINE ID 1 80 -3 1 931 297 277 17 5 chr4 45425971 45426073 -110204047 + PB1D10 SINE Alu 10 112 -37 1 931 313 184 0 0 chr4 45427217 45427266 -110202854 + polypurine Low_complexity Low_complexity 1 49 0 1 931 828 118 0 0 chr4 45427268 45427395 -110202725 + (GGAA)n Simple_repeat Simple_repeat 4 130 0 1 931 876 204 110 148 chr4 45427395 45427849 -110202271 - RMER10A LTR ERVL -5 437 1 1 931 654 260 20 0 chr4 45428411 45428557 -110201563 - RSINE1 SINE B4 -13 152 4 1 931 741 233 96 29 chr4 45428562 45428770 -110201350 - ID_B1 SINE B4 0 224 3 1 931 431 271 80 24 chr4 45428777 45428902 -110201218 - ID_B1 SINE B4 -6 218 87 1 931 198 107 17 35 chr4 45429809 45429867 -110200253 + A-rich Low_complexity Low_complexity 4 60 0 1 931 2301 88 31 3 chr4 45430058 45430376 -110199744 + ORR1A2 LTR MaLR 1 327 0 1 931 289 296 0 54 chr4 45430645 45430875 -110199245 + C-rich Low_complexity Low_complexity 1 217 0 1 931 259 309 7 21 chr4 45430891 45431033 -110199087 + C-rich Low_complexity Low_complexity 6 145 0 1 931 297 0 0 0 chr4 45431801 45431834 -110198286 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 931 219 222 0 0 chr4 45431891 45431936 -110198184 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 931 332 203 16 0 chr4 45432364 45432428 -110197692 + ID4 SINE ID 13 77 -6 1 931 284 257 18 54 chr4 45432428 45432458 -110197662 + ID_B1 SINE B4 13 103 -121 1 931 564 15 0 0 chr4 45432458 45432523 -110197597 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 931 284 257 18 54 chr4 45432523 45432539 -110197581 + ID_B1 SINE B4 104 119 -105 1 931 518 227 233 115 chr4 45435111 45435225 -110194895 + MTEa LTR MaLR 1 119 -260 1 931 485 141 61 0 chr4 45435225 45435324 -110194796 + Lx9 LINE L1 7539 7643 -1 1 931 518 227 233 115 chr4 45435324 45435548 -110194572 + MTEa LTR MaLR 120 379 0 1 931 25 0 0 0 chr4 45436110 45436135 -110193985 + AT_rich Low_complexity Low_complexity 1 25 0 1 931 1220 86 57 0 chr4 45437601 45437776 -110192344 - B2_Mm2 SINE B2 -6 189 5 1 931 454 229 0 0 chr4 45439454 45439537 -110190583 - B1_Mur3 SINE Alu -65 84 2 1 931 254 320 0 127 chr4 45439537 45439573 -110190547 - ID SINE ID -145 79 59 1 931 212 246 69 17 chr4 45440571 45440629 -110189491 - MIRc SINE MIR -94 174 114 1 931 421 287 60 9 chr4 45440690 45440806 -110189314 - ID_B1 SINE B4 -16 208 87 1 931 395 143 79 23 chr4 45441700 45441795 -110188325 - PB1D10 SINE Alu -39 110 14 1 931 3683 160 125 85 chr4 45443061 45443917 -110186203 - RMER19B LTR ERVK -12 890 1 1 931 281 222 16 0 chr4 45445332 45445395 -110184725 + PB1D10 SINE Alu 22 85 -32 1 931 202 297 31 0 chr4 45445709 45445773 -110184347 + MIR3 SINE MIR 109 174 -34 1 931 622 265 81 92 chr4 45447433 45447791 -110182329 + ORR1E LTR MaLR 1 354 -5 1 931 330 26 0 0 chr4 45449207 45449246 -110180874 + (CGGA)n Simple_repeat Simple_repeat 1 39 0 1 931 405 0 0 0 chr4 45449617 45449662 -110180458 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 931 708 257 153 11 chr4 45451203 45451392 -110178728 - B3 SINE B2 0 216 1 1 931 984 81 0 7 chr4 45454717 45454854 -110175266 + B2_Mm2 SINE B2 2 137 -58 1 931 493 303 15 8 chr4 45455748 45455881 -110174239 - B1_Mur1 SINE Alu -15 134 1 1 931 222 319 75 0 chr4 45456857 45456951 -110173169 + MIRm SINE MIR 50 150 -126 1 931 255 276 51 38 chr4 45457231 45457310 -110172810 + MIRb SINE MIR 107 186 -82 1 931 279 292 41 0 chr4 45460586 45460733 -110169387 + (CCCCAG)n Simple_repeat Simple_repeat 3 155 0 1 931 1079 165 72 5 chr4 45461198 45461405 -110168715 + URR1B DNA MER1_type 1 221 -4 1 931 339 25 0 0 chr4 45461423 45461463 -110168657 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 931 534 254 148 0 chr4 45461492 45461634 -110168486 - B3A SINE B2 -34 164 2 1 931 270 316 0 50 chr4 45463707 45463807 -110166313 - RSINE1 SINE B4 -69 96 2 1 931 227 320 70 0 chr4 45465861 45465961 -110164159 - L2b LINE L2 -13 3362 3256 1 931 192 374 48 24 chr4 45466702 45466828 -110163292 + MIRb SINE MIR 81 209 -59 1 931 25 31 0 0 chr4 45467654 45467686 -110162434 + AT_rich Low_complexity Low_complexity 1 32 0 1 931 291 234 39 13 chr4 45467834 45467912 -110162208 - MIRc SINE MIR -117 151 72 1 931 261 0 0 0 chr4 45469150 45469179 -110160941 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 931 189 94 0 0 chr4 45470369 45470401 -110159719 + (TGAG)n Simple_repeat Simple_repeat 3 34 0 1 931 625 279 29 0 chr4 45470408 45470548 -110159572 - RSINE1 SINE B4 -7 158 15 1 931 331 217 136 129 chr4 45471971 45472103 -110158017 - B1F SINE Alu -5 144 12 1 931 579 276 79 76 chr4 45472132 45472422 -110157698 - L1MB3 LINE L1 -95 6088 5798 1 931 775 224 67 58 chr4 45473384 45473607 -110156513 - URR1B DNA MER1_type 0 225 1 1 931 226 250 27 63 chr4 45474008 45474119 -110156001 + L1M5 LINE L1 5753 5859 -265 1 931 1231 65 6 0 chr4 45474184 45474352 -110155768 + B2_Mm1a SINE B2 1 169 -24 1 931 190 175 25 0 chr4 45475079 45475119 -110155001 - MIR3 SINE MIR -12 196 156 1 931 794 156 13 39 chr4 45475316 45475469 -110154651 + B1_Mur4 SINE Alu 2 150 0 1 931 1039 287 95 22 chr4 45475504 45475967 -110154153 - L1MC1 LINE L1 -14 6319 5823 1 931 797 196 6 48 chr4 45476017 45476183 -110153937 - B3A SINE B2 -38 160 2 1 931 377 253 255 28 chr4 45476196 45476373 -110153747 - L1MC1 LINE L1 -575 5758 5542 1 931 1188 62 7 0 chr4 45476706 45476852 -110153268 - B1_Mus2 SINE Alu 0 147 1 1 931 533 177 50 50 chr4 45476966 45477085 -110153035 - PB1D9 SINE Alu 0 120 2 1 931 243 239 0 0 chr4 45478395 45478441 -110151679 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 931 237 295 66 0 chr4 45478446 45478507 -110151613 - B3A SINE B2 -17 181 117 1 931 3131 83 160 10 chr4 45478613 45479125 -110150995 + MT2B LTR ERVL 6 594 -7 1 931 182 250 109 43 chr4 45479862 45479954 -110150166 - MIRb SINE MIR -29 239 142 1 931 189 206 0 0 chr4 45479980 45480014 -110150106 - MIR SINE MIR -213 49 16 1 932 429 271 76 38 chr4 45482246 45482403 -110147717 + RSINE1 SINE B4 3 165 0 1 932 244 275 25 0 chr4 45482403 45482483 -110147637 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 932 452 283 143 11 chr4 45482558 45482747 -110147373 + B4 SINE B4 27 240 -52 1 932 219 299 65 0 chr4 45482932 45483009 -110147111 - PB1D9 SINE Alu -14 106 25 1 932 200 265 145 57 chr4 45483065 45483189 -110146931 - MIR3 SINE MIR -73 135 1 1 932 1025 190 20 0 chr4 45483312 45483507 -110146613 - B3 SINE B2 0 216 18 1 932 627 272 49 62 chr4 45483487 45483730 -110146390 - B4A SINE B4 -52 240 1 1 932 907 285 20 127 chr4 45483763 45484165 -110145955 + MTE2a LTR MaLR 3 361 -18 1 932 216 255 50 69 chr4 45484133 45484234 -110145886 - PB1D10 SINE Alu -6 111 13 1 932 204 40 0 0 chr4 45484544 45484569 -110145551 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 932 243 211 206 22 chr4 45485155 45485247 -110144873 + MIRc SINE MIR 17 125 -143 1 932 423 344 74 0 chr4 45485527 45485716 -110144404 + MIRc SINE MIR 49 251 -17 1 932 557 330 10 16 chr4 45486885 45487079 -110143041 + L4 LINE RTE 746 938 -1091 1 932 180 231 39 0 chr4 45487727 45487779 -110142341 + L2c LINE L2 3111 3164 -223 1 932 295 130 52 115 chr4 45492839 45493066 -110137054 + (AGGTG)n Simple_repeat Simple_repeat 1 212 0 1 932 369 0 0 0 chr4 45493843 45493884 -110136236 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 932 495 297 54 101 chr4 45494140 45494417 -110135703 + B4A SINE B4 23 286 -6 1 932 381 255 85 92 chr4 45494485 45494649 -110135471 + RSINE1 SINE B4 3 165 0 1 932 321 345 11 0 chr4 45496441 45496528 -110133592 - PB1D10 SINE Alu -15 102 15 1 932 364 305 51 22 chr4 45497505 45497690 -110132430 - MIR SINE MIR -25 243 42 1 932 366 154 0 0 chr4 45498210 45498288 -110131832 + CT-rich Low_complexity Low_complexity 1 78 0 1 932 29 28 0 0 chr4 45498690 45498726 -110131394 + AT_rich Low_complexity Low_complexity 1 36 0 1 932 376 256 0 0 chr4 45498760 45498842 -110131278 - B3A SINE B2 -31 167 86 1 932 361 261 78 35 chr4 45498897 45499012 -110131108 + PB1 SINE Alu 6 125 -2 1 932 183 203 254 0 chr4 45499181 45499240 -110130880 - MIR3 SINE MIR -26 182 109 1 932 249 33 0 0 chr4 45499346 45499376 -110130744 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 932 406 234 276 6 chr4 45500492 45500655 -110129465 + ID_B1 SINE B4 3 209 -15 1 932 334 333 68 68 chr4 45501226 45501387 -110128733 + RSINE1 SINE B4 5 165 0 2 932 1162 75 0 13 chr4 45509836 45509985 -110120135 - B1_Mus1 SINE Alu 0 148 2 3 932 246 62 0 0 chr4 45510498 45510530 -110119590 + (CCA)n Simple_repeat Simple_repeat 3 34 0 4 932 237 264 227 11 chr4 45512046 45512134 -110117986 + MER45R DNA Tip100 1 107 -1474 5 932 274 277 0 0 chr4 45512149 45512214 -110117906 - ID4_ SINE ID -17 66 2 6 932 679 149 49 8 chr4 45512349 45512471 -110117649 - B1_Mur4 SINE Alu -21 129 3 7 932 368 283 0 50 chr4 45512374 45512493 -110117627 - MT2B LTR ERVL -344 257 145 8 932 258 364 70 0 chr4 45515568 45515711 -110114409 + L3 LINE CR1 4206 4358 -131 9 932 186 427 0 8 chr4 45516228 45516346 -110113774 - MER5B DNA MER1_type -55 123 7 1 932 219 305 43 31 chr4 45517487 45517622 -110112498 + MIR SINE MIR 77 217 -59 1 932 22 0 0 0 chr4 45517934 45517956 -110112164 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 1263 41 0 0 chr4 45517956 45518102 -110112018 - B1_Mus2 SINE Alu 0 147 2 1 932 219 238 118 45 chr4 45518590 45518700 -110111420 - MIRc SINE MIR -135 133 16 1 932 356 250 99 21 chr4 45520545 45520660 -110109460 - B4A SINE B4 -103 189 68 1 932 243 280 249 6 chr4 45521641 45521810 -110108310 + MIRb SINE MIR 23 232 -36 1 932 622 242 134 21 chr4 45521840 45522034 -110108086 + ID_B1 SINE B4 1 216 -8 1 932 1275 28 0 0 chr4 45523599 45523743 -110106377 - B1_Mus1 SINE Alu 0 148 5 1 932 185 279 0 0 chr4 45523750 45523793 -110106327 - MIRm SINE MIR -13 263 221 1 932 673 229 19 25 chr4 45524615 45524772 -110105348 + RSINE1 SINE B4 7 162 -3 2 932 753 127 17 17 chr4 45524810 45524930 -110105190 - PB1D9 SINE Alu 0 120 1 2 932 30 27 0 0 chr4 45525126 45525163 -110104957 + AT_rich Low_complexity Low_complexity 1 37 0 2 932 408 300 19 62 chr4 45525388 45525548 -110104572 + MER58A DNA MER1_type 72 224 0 2 932 236 227 0 15 chr4 45527289 45527356 -110102764 - L1ME4a LINE L1 -93 6031 5966 2 932 753 260 144 0 chr4 45527808 45528016 -110102104 - B4 SINE B4 0 292 55 2 932 226 275 234 18 chr4 45530209 45530320 -110099800 + MIR SINE MIR 13 147 -115 2 932 212 379 30 8 chr4 45530747 45530880 -110099240 - MIRc SINE MIR -114 154 19 2 932 209 306 23 12 chr4 45532314 45532400 -110097720 - L2 LINE L2 -837 2582 2496 2 932 297 339 113 8 chr4 45532606 45532862 -110097258 + L2a LINE L2 2795 3077 -342 2 932 238 302 45 45 chr4 45532975 45533086 -110097034 + L2a LINE L2 3315 3425 -1 2 932 339 25 0 0 chr4 45533176 45533216 -110096904 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 932 252 346 154 0 chr4 45534548 45534652 -110095468 - RSINE1 SINE B4 0 165 46 3 932 550 273 122 39 chr4 45535569 45535798 -110094322 + MLT1H LTR MaLR 109 356 -193 3 932 460 291 64 64 chr4 45535816 45536003 -110094117 + MER58A DNA MER1_type 38 224 0 3 932 291 340 11 0 chr4 45536593 45536687 -110093433 - MER2 DNA MER2_type -3 342 248 3 932 599 221 55 0 chr4 45536689 45536816 -110093304 + B1_Mur1 SINE Alu 3 136 -13 3 932 853 169 56 17 chr4 45536977 45537157 -110092963 + RMER15 LTR ERVL 4 190 -385 3 932 312 91 0 0 chr4 45537251 45537295 -110092825 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 932 904 207 67 57 chr4 45537304 45537514 -110092606 - B3 SINE B2 -4 212 1 3 932 444 229 27 9 chr4 45537531 45537641 -110092479 - ID_B1 SINE B4 -9 215 104 3 932 279 0 0 0 chr4 45537888 45537919 -110092201 + (T)n Simple_repeat Simple_repeat 1 31 0 4 932 1264 40 0 0 chr4 45537919 45538067 -110092053 - B1_Mus1 SINE Alu 0 148 1 4 932 190 310 46 0 chr4 45539313 45539400 -110090720 + MER5A DNA MER1_type 5 95 -94 4 932 1005 231 170 54 chr4 45539405 45539834 -110090286 + Lx8 LINE L1 6995 7473 0 4 932 574 273 29 104 chr4 45539869 45540110 -110090010 + ID_B1 SINE B4 2 224 0 4 932 434 33 33 0 chr4 45540110 45540166 -110089954 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 4 932 274 215 10 31 chr4 45542696 45542792 -110087328 + (CCG)n Simple_repeat Simple_repeat 3 96 0 4 932 23 54 0 0 chr4 45543148 45543185 -110086935 + GC_rich Low_complexity Low_complexity 1 37 0 4 932 24 77 0 0 chr4 45543576 45543628 -110086492 + GC_rich Low_complexity Low_complexity 1 52 0 4 932 190 149 0 30 chr4 45544375 45544428 -110085692 - MIR SINE MIR -119 157 109 4 932 1707 26 0 0 chr4 45546114 45546307 -110083813 + B2_Mm1a SINE B2 1 193 0 5 932 527 270 5 62 chr4 45546755 45546928 -110083192 - ID_B1 SINE B4 -53 239 78 5 932 496 257 73 7 chr4 45546929 45547066 -110083054 - B1_Mur1 SINE Alu -1 148 3 5 932 252 311 54 101 chr4 45547066 45547143 -110082977 - MT2B2 LTR ERVL -421 163 95 5 932 315 196 0 0 chr4 45547266 45547322 -110082798 - ID_B1 SINE B4 0 224 169 5 932 274 310 28 83 chr4 45547322 45547375 -110082745 - PB1D7 SINE Alu 0 120 18 5 932 245 336 36 9 chr4 45547491 45547602 -110082518 + B1_Mus1 SINE Alu 35 148 0 5 932 1317 115 11 0 chr4 45547808 45547999 -110082121 + B2_Mm1t SINE B2 1 193 0 5 932 22 0 0 0 chr4 45547999 45548021 -110082099 + AT_rich Low_complexity Low_complexity 1 22 0 5 932 22 0 0 0 chr4 45548254 45548276 -110081844 + AT_rich Low_complexity Low_complexity 1 22 0 5 932 1382 246 36 6 chr4 45548500 45548836 -110081284 - ORR1D2 LTR MaLR 0 370 25 6 932 426 230 200 45 chr4 45548969 45549169 -110080951 + L2a LINE L2 2704 2934 -485 6 932 522 304 86 94 chr4 45549219 45549590 -110080530 + L2a LINE L2 3056 3423 -3 6 932 2316 165 25 163 chr4 45549797 45550434 -110079686 + RMER15 LTR ERVL 27 575 0 6 932 235 293 146 57 chr4 45550507 45550699 -110079421 - L1MA9 LINE L1 -216 6096 5888 6 932 888 279 47 22 chr4 45550793 45551071 -110079049 - B4A SINE B4 -2 290 6 6 932 518 241 6 108 chr4 45551075 45551233 -110078887 - B1F SINE Alu -7 142 1 6 932 375 244 0 12 chr4 45551237 45551320 -110078800 - ID_B1 SINE B4 -2 222 141 6 932 1181 270 55 20 chr4 45551374 45551885 -110078235 - L1MA9 LINE L1 -566 5746 5214 6 932 228 163 23 0 chr4 45551887 45551930 -110078190 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 932 180 77 0 0 chr4 45551991 45552017 -110078103 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 932 969 224 28 14 chr4 45552029 45552242 -110077878 - B3 SINE B2 0 216 1 6 932 548 249 94 64 chr4 45552343 45552545 -110077575 - B4A SINE B4 -81 211 4 7 932 1327 221 87 42 chr4 45552562 45552647 -110077473 - L1MA9 LINE L1 -964 5179 5100 6 932 1021 132 174 31 chr4 45552647 45552843 -110077277 - URR1B DNA MER1_type 0 225 2 7 932 1327 221 87 42 chr4 45552843 45552956 -110077164 - L1MA9 LINE L1 -1044 5099 4970 6 932 342 0 0 0 chr4 45552956 45552994 -110077126 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 932 1327 221 87 42 chr4 45552994 45553220 -110076900 - L1MA9 LINE L1 -1174 4969 4736 6 932 709 225 69 0 chr4 45554058 45554218 -110075902 - B3A SINE B2 -1 197 27 7 932 1250 48 0 0 chr4 45554233 45554380 -110075740 - B1_Mus2 SINE Alu 0 147 1 7 932 453 286 26 24 chr4 45554767 45554917 -110075203 - ID_B1 SINE B4 -5 219 73 7 932 357 82 0 0 chr4 45554925 45554974 -110075146 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 7 932 198 91 0 0 chr4 45554976 45555009 -110075111 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 7 932 187 306 193 40 chr4 45555076 45555226 -110074894 + MER5A DNA MER1_type 3 175 -14 7 932 770 163 15 8 chr4 45555418 45555548 -110074572 + B1F2 SINE Alu 14 144 -5 7 932 740 187 104 0 chr4 45555674 45555808 -110074312 + B1_Mus1 SINE Alu 1 148 0 8 932 1289 14 7 0 chr4 45555810 45555955 -110074165 + B1_Mm SINE Alu 1 146 -1 8 932 603 0 0 0 chr4 45556006 45556073 -110074047 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 8 932 332 297 60 74 chr4 45556872 45557021 -110073099 + MT2B LTR ERVL 107 253 -348 8 932 603 279 7 7 chr4 45556925 45557066 -110073054 + ID_B1 SINE B4 84 224 0 8 932 1498 58 16 0 chr4 45557130 45557319 -110072801 + B2_Mm2 SINE B2 1 192 -3 8 932 437 271 76 0 chr4 45557332 45557450 -110072670 + B4A SINE B4 98 224 -68 8 932 1927 181 62 20 chr4 45557474 45557874 -110072246 + MTD LTR MaLR 3 419 0 8 932 340 176 122 0 chr4 45557874 45557948 -110072172 + RSINE1 SINE B4 13 95 -70 8 932 420 268 8 43 chr4 45557958 45558075 -110072045 - RSINE1 SINE B4 -9 156 44 8 932 1197 89 0 0 chr4 45558077 45558245 -110071875 + (TATG)n Simple_repeat Simple_repeat 2 169 0 9 932 1146 176 54 5 chr4 45558259 45558464 -110071656 - B3 SINE B2 0 216 2 9 932 3413 141 10 56 chr4 45558541 45559144 -110070976 - RMER15 LTR ERVL 0 575 1 9 932 686 133 70 17 chr4 45559797 45559912 -110070208 - B1_Mur4 SINE Alu -24 126 6 9 932 1047 162 93 19 chr4 45559908 45560073 -110070047 - ORR1C2 LTR MaLR -33 351 185 9 932 401 84 14 0 chr4 45560073 45560144 -110069976 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 9 932 1047 162 93 19 chr4 45560144 45560192 -110069928 - ORR1C2 LTR MaLR -200 184 124 9 932 309 295 103 41 chr4 45560339 45560484 -110069636 - B4A SINE B4 -35 257 104 9 932 238 311 163 8 chr4 45560640 45560763 -110069357 + MIRb SINE MIR 2 143 -125 9 932 252 271 43 0 chr4 45561004 45561074 -110069046 + MLT1K LTR MaLR 514 586 -9 9 932 198 167 0 0 chr4 45561092 45561128 -110068992 + GA-rich Low_complexity Low_complexity 1 36 0 9 932 2185 98 35 3 chr4 45561329 45561645 -110068475 + ORR1A2 LTR MaLR 1 326 -1 1 932 658 135 0 0 chr4 45561614 45561710 -110068410 + U6 snRNA snRNA 1 96 -11 1 932 384 119 0 0 chr4 45561713 45561772 -110068348 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1 932 420 121 0 0 chr4 45561774 45561840 -110068280 + ORR1A2 LTR MaLR 256 321 -6 1 932 613 298 51 37 chr4 45562121 45562337 -110067783 - ID_B1 SINE B4 -5 219 1 1 932 761 246 59 48 chr4 45563415 45563662 -110066458 + B4A SINE B4 27 286 -6 1 932 216 97 0 0 chr4 45565189 45565220 -110064900 + (G)n Simple_repeat Simple_repeat 1 31 0 1 932 442 232 0 4 chr4 45565222 45565315 -110064805 + ID4 SINE ID 1 91 -61 1 932 276 162 24 129 chr4 45565874 45565959 -110064161 - MER53 DNA hAT -93 100 25 1 932 288 236 0 65 chr4 45565887 45565964 -110064156 + MER53 DNA hAT 113 184 -9 1 932 246 62 0 0 chr4 45566259 45566291 -110063829 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 1 932 215 152 0 0 chr4 45566302 45566335 -110063785 + ID4_ SINE ID 49 81 -2 1 932 315 0 0 0 chr4 45566421 45566456 -110063664 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 932 459 0 0 0 chr4 45566456 45566506 -110063614 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 932 602 258 16 0 chr4 45566524 45566648 -110063472 - ID_B1 SINE B4 -18 206 81 1 932 291 250 19 0 chr4 45566986 45567058 -110063062 - ID4 SINE ID -76 76 3 1 932 479 261 48 61 chr4 45567169 45567316 -110062804 - B1_Mur2 SINE Alu 0 149 5 1 932 207 196 43 0 chr4 45567586 45567632 -110062488 + CT-rich Low_complexity Low_complexity 1 48 0 1 932 496 191 75 19 chr4 45567644 45567751 -110062369 - B1F SINE Alu -36 113 1 1 932 603 292 76 7 chr4 45567755 45568040 -110062080 - L1M3 LINE L1 -477 5814 5507 1 932 495 0 0 0 chr4 45568079 45568134 -110061986 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 932 482 261 97 0 chr4 45568557 45568691 -110061429 + B1_Mur2 SINE Alu 2 148 -1 1 932 574 234 7 74 chr4 45569244 45569272 -110060848 - ID_B1 SINE B4 0 224 207 1 932 2763 126 166 70 chr4 45569272 45569828 -110060292 + RMER19C LTR ERVK 1 609 -2 1 932 574 234 7 74 chr4 45569828 45569947 -110060173 - ID_B1 SINE B4 -18 206 87 1 932 245 176 45 18 chr4 45570474 45570584 -110059536 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 932 292 226 48 10 chr4 45570607 45570710 -110059410 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 932 180 161 0 0 chr4 45570744 45570775 -110059345 - MIRm SINE MIR -6 270 240 1 932 231 304 181 16 chr4 45571578 45571705 -110058415 - MIRc SINE MIR -119 149 2 1 932 238 281 0 17 chr4 45572144 45572202 -110057918 - RCHARR1 DNA MER1_type 0 974 918 1 932 403 229 219 8 chr4 45572213 45572336 -110057784 - B1F1 SINE Alu 0 149 1 1 932 437 185 37 0 chr4 45572369 45572450 -110057670 - ORR1D1 LTR MaLR -5 369 286 1 932 565 135 0 88 chr4 45572447 45572561 -110057559 + B1_Mur1 SINE Alu 29 132 -17 1 932 459 0 0 0 chr4 45572562 45572613 -110057507 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 932 1465 284 74 43 chr4 45572616 45573102 -110057018 - RCHARR1 DNA MER1_type -471 503 3 1 932 2292 87 78 43 chr4 45573520 45573893 -110056227 + ORR1B1 LTR MaLR 1 386 -8 1 932 182 65 0 61 chr4 45574061 45574081 -110056039 + (CTG)n Simple_repeat Simple_repeat 2 20 0 1 932 477 50 0 0 chr4 45574081 45574141 -110055979 + (TCC)n Simple_repeat Simple_repeat 3 62 0 1 932 182 65 0 61 chr4 45574141 45574153 -110055967 + (CTG)n Simple_repeat Simple_repeat 2 13 0 1 932 343 263 216 36 chr4 45574161 45574319 -110055801 + MER58B DNA MER1_type 32 324 -17 1 932 2968 74 17 7 chr4 45574690 45575097 -110055023 - RLTR10A LTR ERVK 0 411 1 1 932 376 269 5 12 chr4 45575304 45575397 -110054723 - PB1D10 SINE Alu -53 96 1 1 932 322 319 35 0 chr4 45575576 45575745 -110054375 - L1M6 LINE L1 -4951 1545 1371 1 932 186 306 109 62 chr4 45576035 45576227 -110053893 + L2 LINE L2 2153 2353 -1066 1 932 313 211 0 17 chr4 45576231 45576309 -110053811 + ID4 SINE ID 5 79 -73 1 932 324 0 0 0 chr4 45576705 45576741 -110053379 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 932 323 184 44 140 chr4 45576741 45576855 -110053265 + MT2B LTR ERVL 154 256 -345 1 932 734 182 7 29 chr4 45576765 45576901 -110053219 + B1_Mur3 SINE Alu 17 149 0 1 932 396 0 0 0 chr4 45576904 45576948 -110053172 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 932 2222 250 75 147 chr4 45576950 45578435 -110051685 + L1M4 LINE L1 3389 4766 -1380 1 932 502 309 0 8 chr4 45578438 45578565 -110051555 + ID_B1 SINE B4 79 204 -20 1 932 22 35 0 0 chr4 45578642 45578671 -110051449 + AT_rich Low_complexity Low_complexity 1 29 0 1 932 1172 51 0 0 chr4 45578674 45578811 -110051309 + B1_Mm SINE Alu 2 138 -9 1 932 216 0 0 0 chr4 45578830 45578854 -110051266 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 932 444 276 0 20 chr4 45578867 45578967 -110051153 - RSINE1 SINE B4 0 165 68 1 932 1960 128 3 3 chr4 45578976 45579267 -110050853 - ORR1A3 LTR MaLR 0 326 36 1 932 1336 291 86 29 chr4 45579320 45579974 -110050146 - L1MA8 LINE L1 -6 6285 5595 1 932 352 307 105 0 chr4 45579997 45580111 -110050009 - ID_B1 SINE B4 -21 203 78 1 932 262 170 21 0 chr4 45580123 45580170 -110049950 - L1MA8 LINE L1 -698 5593 5546 1 932 25 0 0 0 chr4 45580351 45580376 -110049744 + AT_rich Low_complexity Low_complexity 1 25 0 1 932 285 29 0 0 chr4 45580822 45580856 -110049264 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1 932 397 266 0 0 chr4 45580858 45580937 -110049183 - ID4 SINE ID -3 80 2 1 932 534 103 0 0 chr4 45580961 45581039 -110049081 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 1 932 219 36 0 0 chr4 45581039 45581067 -110049053 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 932 547 279 6 67 chr4 45581419 45581584 -110048536 - ID_B1 SINE B4 0 224 70 1 932 993 147 0 7 chr4 45581822 45581973 -110048147 - B1_Mur4 SINE Alu 0 150 1 1 932 288 0 0 0 chr4 45582011 45582043 -110048077 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 932 636 277 0 8 chr4 45582045 45582176 -110047944 - RSINE1 SINE B4 -25 140 11 1 932 217 220 68 0 chr4 45582997 45583056 -110047064 - MIR SINE MIR -143 119 57 1 932 248 136 0 43 chr4 45583079 45583125 -110046995 - ID_B1 SINE B4 -16 208 165 1 932 808 231 134 0 chr4 45583241 45583427 -110046693 - ID_B1 SINE B4 -5 219 9 1 932 232 27 0 51 chr4 45583728 45583767 -110046353 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1 932 566 147 80 27 chr4 45583772 45583884 -110046236 - B1_Mur3 SINE Alu -1 148 31 1 932 1046 135 6 0 chr4 45583916 45584094 -110046026 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 932 419 253 6 102 chr4 45584280 45584419 -110045701 + PB1D7 SINE Alu 8 149 0 1 932 237 191 16 16 chr4 45584419 45584483 -110045637 + A-rich Low_complexity Low_complexity 3 66 0 1 932 201 74 0 0 chr4 45584484 45584511 -110045609 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 932 506 230 0 182 chr4 45584746 45584927 -110045193 + B1_Mur3 SINE Alu 2 149 0 1 932 261 0 0 0 chr4 45585201 45585230 -110044890 + (A)n Simple_repeat Simple_repeat 1 29 0 1 932 861 165 141 50 chr4 45585236 45585434 -110044686 - B3 SINE B2 0 216 1 1 932 258 32 0 0 chr4 45585539 45585570 -110044550 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1 932 518 159 0 33 chr4 45585570 45585712 -110044408 - B1_Mus2 SINE Alu -10 137 31 1 932 452 262 88 47 chr4 45585694 45585842 -110044278 - B3 SINE B2 -56 160 7 1 932 189 175 0 0 chr4 45586249 45586289 -110043831 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 1 932 257 274 14 0 chr4 45586680 45586753 -110043367 + ID4_ SINE ID 1 74 -9 1 932 471 184 262 13 chr4 45586923 45587072 -110043048 - L1MC2 LINE L1 -160 6184 5999 1 932 203 239 22 0 chr4 45587204 45587250 -110042870 + CT-rich Low_complexity Low_complexity 2 48 0 1 932 299 272 24 12 chr4 45587275 45587357 -110042763 - MIRb SINE MIR -139 129 47 1 932 267 317 115 0 chr4 45588153 45588257 -110041863 - PB1D10 SINE Alu -1 116 1 1 932 358 268 0 24 chr4 45588302 45588386 -110041734 + PB1D10 SINE Alu 34 115 -2 1 932 243 0 0 0 chr4 45588512 45588539 -110041581 + (A)n Simple_repeat Simple_repeat 1 27 0 1 932 264 317 14 143 chr4 45588540 45588680 -110041440 + ID_B1 SINE B4 50 171 -53 1 932 356 305 21 0 chr4 45588604 45588699 -110041421 + PB1D10 SINE Alu 13 109 -8 1 932 229 319 0 0 chr4 45588725 45588794 -110041326 + ID4 SINE ID 1 69 -14 1 932 194 350 55 31 chr4 45588897 45589024 -110041096 + MIRc SINE MIR 48 177 -91 1 932 825 181 7 0 chr4 45589105 45589243 -110040877 - B1_Mur2 SINE Alu -9 140 2 1 932 377 303 101 0 chr4 45589345 45589444 -110040676 - PB1D10 SINE Alu -8 109 1 1 932 656 290 49 0 chr4 45589444 45589523 -110040597 - ID SINE ID -136 88 2 1 932 180 0 0 0 chr4 45589525 45589545 -110040575 + (A)n Simple_repeat Simple_repeat 1 20 0 1 932 722 323 43 110 chr4 45590692 45590882 -110039238 + ORR1E LTR MaLR 5 169 -190 1 932 937 143 0 20 chr4 45590882 45591032 -110039088 - B1_Mus2 SINE Alu 0 147 1 1 932 722 323 43 110 chr4 45591032 45591213 -110038907 + ORR1E LTR MaLR 170 351 -8 1 932 21 0 0 0 chr4 45591462 45591483 -110038637 + GC_rich Low_complexity Low_complexity 1 21 0 1 932 240 309 24 8 chr4 45592316 45592443 -110037677 - HAL1b LINE L1 -30 1979 1851 1 932 216 0 0 0 chr4 45592639 45592663 -110037457 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 932 920 278 11 11 chr4 45592664 45592926 -110037194 - L1MB7 LINE L1 -17 6167 5906 2 932 804 225 25 30 chr4 45592926 45593123 -110036997 + B3A SINE B2 3 198 0 2 932 1547 235 88 50 chr4 45593412 45594208 -110035912 + RMER1B Other Other 1 525 -541 2 932 4639 190 111 19 chr4 45594209 45595027 -110035093 + RMER1A Other Other 3 872 -158 2 932 432 0 0 0 chr4 45595027 45595075 -110035045 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 932 4639 190 111 19 chr4 45595075 45595197 -110034923 + RMER1A Other Other 873 1028 -2 2 932 1773 268 43 29 chr4 45595204 45595827 -110034293 - L1MB7 LINE L1 -260 5924 5293 2 932 297 294 107 89 chr4 45596389 45596432 -110033688 + MLT2B5 LTR ERVL 120 166 -551 2 932 737 296 93 68 chr4 45596432 45596787 -110033333 + MTEb LTR MaLR 1 364 -15 2 932 252 86 0 0 chr4 45597092 45597127 -110032993 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 932 241 310 68 72 chr4 45597205 45597393 -110032727 + MIR SINE MIR 16 208 -60 2 932 224 218 0 0 chr4 45597596 45597651 -110032469 + (TCTCTG)n Simple_repeat Simple_repeat 5 59 0 2 932 732 239 159 5 chr4 45597652 45597841 -110032279 - ID_B1 SINE B4 -5 219 2 2 932 257 265 43 108 chr4 45598623 45598716 -110031404 - B1F1 SINE Alu -36 113 27 2 932 204 400 22 0 chr4 45598895 45598985 -110031135 + L2b LINE L2 3070 3161 -214 2 932 207 250 163 59 chr4 45599473 45599626 -110030494 - MIR3 SINE MIR -10 198 30 2 932 214 162 27 0 chr4 45600068 45600105 -110030015 + CT-rich Low_complexity Low_complexity 3 40 0 2 932 423 0 0 0 chr4 45600108 45600155 -110029965 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 932 548 211 82 125 chr4 45600421 45600605 -110029515 - B3 SINE B2 -4 212 37 2 932 376 302 89 54 chr4 45601359 45601618 -110028502 + L2a LINE L2 2984 3251 -175 2 932 589 350 46 4 chr4 45601620 45601881 -110028239 - LTR37B LTR ERV1 0 468 197 2 932 237 227 39 26 chr4 45602088 45602165 -110027955 + MER3 DNA MER1_type 92 169 -40 2 932 365 262 9 112 chr4 45602904 45603020 -110027100 + RLTR33 LTR ERVK 447 550 -128 2 932 380 267 188 22 chr4 45603058 45603330 -110026790 - RMER17C LTR ERVK -73 337 21 2 932 299 316 0 59 chr4 45603927 45604028 -110026092 - ORR1E LTR MaLR -237 122 28 2 932 248 341 125 16 chr4 45604143 45604271 -110025849 + L2a LINE L2 3285 3426 0 2 932 341 291 47 0 chr4 45605643 45605729 -110024391 + MTEa LTR MaLR 5 94 -285 2 932 345 270 98 18 chr4 45606420 45606606 -110023514 - L1MB3 LINE L1 -155 6028 5816 2 932 1084 7 28 42 chr4 45606726 45607159 -110022961 + (CA)n Simple_repeat Simple_repeat 1 426 0 2 932 1070 13 39 22 chr4 45607170 45607399 -110022721 + (CA)n Simple_repeat Simple_repeat 1 233 0 2 932 365 71 36 0 chr4 45607630 45607686 -110022434 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 2 932 198 0 0 0 chr4 45607690 45607712 -110022408 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 932 992 114 0 0 chr4 45607712 45607844 -110022276 - B1_Mus1 SINE Alu -9 139 8 2 932 569 14 14 0 chr4 45607866 45607936 -110022184 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 932 690 261 38 0 chr4 45607945 45608102 -110022018 - RSINE1 SINE B4 0 165 3 2 932 2438 78 25 0 chr4 45608116 45608435 -110021685 + ORR1A2 LTR MaLR 1 327 0 2 932 323 210 48 39 chr4 45608791 45608895 -110021225 - MTEa LTR MaLR -2 377 273 2 932 552 244 17 0 chr4 45609928 45610043 -110020077 + ID_B1 SINE B4 37 153 -71 2 932 665 299 73 0 chr4 45610036 45610240 -110019880 + Tigger5 DNA MER2_type 24 242 -2164 2 932 348 221 0 14 chr4 45610266 45610335 -110019785 + Tigger5 DNA MER2_type 2339 2406 0 2 932 207 69 0 0 chr4 45610487 45610516 -110019604 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 2 932 451 250 109 0 chr4 45610516 45610608 -110019512 - RSINE1 SINE B4 -61 104 3 2 932 720 218 0 21 chr4 45610842 45610987 -110019133 - B1F2 SINE Alu -3 146 5 2 932 497 120 0 12 chr4 45611106 45611190 -110018930 + (TCC)n Simple_repeat Simple_repeat 2 84 0 2 932 1114 136 60 5 chr4 45611190 45611375 -110018745 - B2_Mm2 SINE B2 0 195 1 2 932 984 301 75 25 chr4 45611972 45612330 -110017790 - MTE2a LTR MaLR 0 379 4 2 932 247 258 19 200 chr4 45612529 45612684 -110017436 - B2_Mm1t SINE B2 -1 192 66 2 932 1150 70 33 136 chr4 45612701 45612915 -110017205 - B2_Mm2 SINE B2 -1 194 3 2 932 207 237 17 17 chr4 45612944 45613004 -110017116 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 2 116 484 235 26 9 chr4 45613029 45613145 -110016975 - PB1D9 SINE Alu -1 119 2 2 933 908 320 72 33 chr4 45613375 45614179 -110015941 - L1ME2z LINE L1 -306 6138 5287 2 933 794 147 6 33 chr4 45614202 45614385 -110015735 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 2 933 624 250 0 40 chr4 45614391 45614541 -110015579 - B1F SINE Alu -3 146 3 2 933 467 227 64 30 chr4 45614650 45614805 -110015315 - MTEb LTR MaLR -6 373 211 2 933 362 320 33 0 chr4 45614845 45614967 -110015153 - MTEb LTR MaLR -233 126 1 2 933 520 289 0 0 chr4 45615283 45615397 -110014723 + MLT1D LTR MaLR 87 200 -305 2 933 519 262 34 34 chr4 45615412 45615590 -110014530 + MLT1D LTR MaLR 262 439 -66 2 933 461 215 11 0 chr4 45615656 45615749 -110014371 + PB1D7 SINE Alu 27 120 0 2 933 455 195 20 65 chr4 45615776 45615889 -110014231 + PB1D9 SINE Alu 5 107 -13 2 933 189 175 0 0 chr4 45615889 45615929 -110014191 + GA-rich Low_complexity Low_complexity 3 42 0 2 933 335 324 35 44 chr4 45615970 45616057 -110014063 + PB1 SINE Alu 9 96 -31 2 933 3293 49 15 0 chr4 45616057 45616447 -110013673 + MTA_Mm LTR MaLR 1 396 0 2 933 335 324 35 44 chr4 45616447 45616472 -110013648 + PB1 SINE Alu 97 120 -7 2 933 298 254 0 0 chr4 45617689 45617748 -110012372 - MIR SINE MIR -68 140 82 2 933 929 227 87 0 chr4 45617753 45617938 -110012182 + B3 SINE B2 1 201 -15 2 933 220 290 99 6 chr4 45618878 45619011 -110011109 + MIR3 SINE MIR 68 213 -49 2 933 356 215 37 25 chr4 45619029 45619110 -110011010 + ID2 SINE ID 2 83 0 2 933 276 309 0 14 chr4 45619121 45619190 -110010930 + PB1D10 SINE Alu 49 116 -1 2 933 273 337 39 10 chr4 45620262 45620364 -110009756 + MIR SINE MIR 43 147 -61 2 933 660 171 8 58 chr4 45621178 45621333 -110008787 - B1_Mur4 SINE Alu -1 149 1 2 933 475 261 160 28 chr4 45621333 45621546 -110008574 - MLT1A0 LTR MaLR -57 308 68 2 933 284 309 86 0 chr4 45621708 45621789 -110008331 + MIR SINE MIR 27 114 -148 2 933 725 267 48 74 chr4 45622418 45622868 -110007252 - RLTR15 LTR ERVK 0 359 1 2 933 231 346 112 30 chr4 45622955 45623089 -110007031 - MLT1E2 LTR MaLR -477 150 6 2 933 352 205 0 13 chr4 45623057 45623144 -110006976 + ID4_ SINE ID 9 94 -58 2 933 355 277 53 66 chr4 45623353 45623504 -110006616 - ORR1E LTR MaLR -5 354 206 2 933 219 146 0 0 chr4 45623539 45623580 -110006540 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 933 460 305 78 17 chr4 45623588 45623768 -110006352 - ORR1E LTR MaLR -167 192 2 2 933 289 287 5 191 chr4 45624255 45624449 -110005671 - MLT1A LTR MaLR -193 181 24 2 933 228 297 85 36 chr4 45624785 45625092 -110005028 - L1ME3B LINE L1 -176 6064 5743 2 933 345 179 48 71 chr4 45625780 45625864 -110004256 - B1F SINE Alu 0 149 68 2 933 481 194 54 0 chr4 45625871 45625969 -110004151 - B1_Mus1 SINE Alu -3 147 35 2 933 358 296 112 9 chr4 45626008 45626124 -110003996 - RSINE1 SINE B4 -36 129 2 2 933 246 296 19 0 chr4 45626124 45626177 -110003943 - PB1D7 SINE Alu -35 85 32 2 933 514 198 26 26 chr4 45626237 45626351 -110003769 - ID_B1 SINE B4 -1 223 110 2 933 274 189 151 12 chr4 45626756 45626922 -110003198 - RMER17D LTR ERVK -367 522 334 2 933 1361 56 6 0 chr4 45626925 45627104 -110003016 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 2 933 258 260 94 0 chr4 45627523 45627619 -110002501 - L1ME3B LINE L1 -459 5665 5561 2 933 1088 294 41 11 chr4 45627977 45628341 -110001779 + MTEb LTR MaLR 3 377 -2 2 933 198 279 66 0 chr4 45628406 45628467 -110001653 - MIRc SINE MIR -95 173 109 2 933 463 165 0 23 chr4 45629179 45629266 -110000854 - MTEa LTR MaLR -16 363 279 2 933 255 83 50 0 chr4 45629275 45629335 -110000785 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 933 260 321 0 12 chr4 45629532 45629614 -110000506 - MER5A1 DNA MER1_type -47 119 39 2 933 212 246 58 26 chr4 45629642 45629743 -110000377 + L2b LINE L2 3281 3385 -2 2 933 266 261 117 21 chr4 45629743 45629837 -110000283 - MER103 DNA DNA -61 105 3 2 933 472 234 39 24 chr4 45630487 45630614 -109999506 - MTEa LTR MaLR 0 379 251 2 933 341 261 30 89 chr4 45630826 45631062 -109999058 + L1M6 LINE L1 1116 1337 -5159 2 933 2222 162 23 32 chr4 45631335 45631715 -109998405 - RMER10A LTR ERVL -7 435 56 2 933 261 0 0 0 chr4 45631715 45631744 -109998376 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 933 1058 45 53 0 chr4 45631744 45631876 -109998244 - B1_Mus2 SINE Alu -8 139 1 2 933 2222 162 23 32 chr4 45631876 45631933 -109998187 - RMER10A LTR ERVL -387 55 2 2 933 259 325 24 0 chr4 45631990 45632073 -109998047 + CT-rich Low_complexity Low_complexity 1 85 0 2 933 451 238 10 29 chr4 45632684 45632788 -109997332 + ORR1D2 LTR MaLR 263 364 -6 2 933 231 282 14 2 chr4 45632809 45632893 -109997227 - PB1D10 SINE Alu -5 144 59 2 933 581 285 94 28 chr4 45633000 45633213 -109996907 + B4A SINE B4 6 232 -60 2 933 912 171 0 0 chr4 45633220 45633360 -109996760 + B1_Mur3 SINE Alu 10 149 0 2 933 217 170 21 21 chr4 45633360 45633408 -109996712 + GA-rich Low_complexity Low_complexity 1 48 0 2 933 207 299 0 0 chr4 45633460 45633567 -109996553 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 933 246 284 0 29 chr4 45633577 45633646 -109996474 + (CATA)n Simple_repeat Simple_repeat 3 69 0 2 933 274 318 113 25 chr4 45633648 45633851 -109996269 - RMER12 LTR ERVK -368 954 734 2 933 378 256 67 0 chr4 45634179 45634269 -109995851 + PB1D10 SINE Alu 22 117 0 2 933 212 151 0 102 chr4 45634404 45634463 -109995657 + A-rich Low_complexity Low_complexity 4 56 0 3 933 759 309 73 16 chr4 45634463 45634913 -109995207 + L1MB4 LINE L1 5593 6068 -112 3 933 868 228 42 0 chr4 45634944 45635111 -109995009 + B3 SINE B2 3 176 -40 3 933 660 191 191 29 chr4 45635113 45635286 -109994834 + B3 SINE B2 6 206 -10 3 933 396 0 0 0 chr4 45635289 45635333 -109994787 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 933 557 239 7 27 chr4 45635343 45635362 -109994758 + ID_B1 SINE B4 72 214 -10 3 933 822 110 24 0 chr4 45635362 45635489 -109994631 + B1_Mur4 SINE Alu 11 140 -10 3 933 438 20 0 0 chr4 45635502 45635553 -109994567 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 3 933 358 333 67 31 chr4 45635617 45635840 -109994280 + L1M4 LINE L1 2303 2533 -3613 3 933 383 259 142 0 chr4 45636015 45636177 -109993943 - L1MC4 LINE L1 -269 7613 7429 3 933 422 328 148 59 chr4 45636381 45636825 -109993295 - L1MC4 LINE L1 -994 7048 6565 3 933 874 174 28 0 chr4 45636825 45636969 -109993151 - B1_Mur4 SINE Alu -2 148 1 3 933 400 347 100 96 chr4 45636969 45637000 -109993120 - L1MC4 LINE L1 -1318 6564 6544 3 933 1088 198 14 14 chr4 45637000 45637215 -109992905 - B3 SINE B2 0 216 2 3 933 400 347 100 96 chr4 45637215 45637315 -109992805 - L1MC4 LINE L1 -1339 6543 6446 3 933 466 268 0 74 chr4 45637815 45637936 -109992184 + B1_Mur2 SINE Alu 1 112 -37 3 933 1831 160 72 9 chr4 45637933 45638403 -109991717 - RMER19B LTR ERVK -340 562 1 3 933 1054 286 35 16 chr4 45638659 45638972 -109991148 - MLT2D LTR ERVL -8 406 88 3 933 328 238 48 18 chr4 45639057 45639121 -109990999 + G-rich Low_complexity Low_complexity 1 68 0 3 933 2125 92 75 13 chr4 45639121 45639429 -109990691 - ORR1A2 LTR MaLR 0 327 1 3 933 450 0 0 0 chr4 45639437 45639487 -109990633 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 933 328 238 48 18 chr4 45639487 45639580 -109990540 + G-rich Low_complexity Low_complexity 77 171 0 3 933 293 219 114 68 chr4 45639582 45639670 -109990450 + B4A SINE B4 25 116 -176 3 933 273 325 36 0 chr4 45639744 45639827 -109990293 + RSINE1 SINE B4 78 163 -2 3 933 573 219 114 21 chr4 45640020 45640160 -109989960 + B3A SINE B2 3 155 -43 3 933 815 227 31 31 chr4 45640237 45640428 -109989692 + B3A SINE B2 1 191 -7 3 933 221 312 38 0 chr4 45642634 45642714 -109987406 - PB1D10 SINE Alu -1 116 34 3 933 342 0 0 0 chr4 45643120 45643158 -109986962 + (T)n Simple_repeat Simple_repeat 1 38 0 3 933 1231 68 0 0 chr4 45643158 45643305 -109986815 - B1_Mus1 SINE Alu 0 148 2 3 933 326 343 207 16 chr4 45643463 45643768 -109986352 - L1MC4 LINE L1 -414 7628 7266 3 933 405 0 0 0 chr4 45645082 45645127 -109984993 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 933 363 295 0 10 chr4 45645996 45646092 -109984028 + RSINE1 SINE B4 46 140 -25 3 933 792 101 0 0 chr4 45646096 45646234 -109983886 + (CA)n Simple_repeat Simple_repeat 1 138 0 3 933 180 97 0 0 chr4 45646427 45646458 -109983662 + (ACTG)n Simple_repeat Simple_repeat 4 34 0 3 933 1662 27 0 0 chr4 45646887 45647074 -109983046 - B2_Mm1a SINE B2 -5 188 2 3 933 746 226 0 20 chr4 45647074 45647223 -109982897 - B1F SINE Alu -1 148 3 3 933 934 301 48 14 chr4 45647271 45647628 -109982492 - Zaphod DNA Tip100 -48 3983 3615 3 933 467 229 104 0 chr4 45647662 45647758 -109982362 + MER58A DNA MER1_type 1 106 -118 3 933 1313 38 0 6 chr4 45647798 45647959 -109982161 + B2_Mm2 SINE B2 2 161 -34 3 933 369 0 0 0 chr4 45647959 45648000 -109982120 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 933 341 43 0 21 chr4 45648009 45648057 -109982063 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 3 933 863 251 6 0 chr4 45648057 45648232 -109981888 + ID_B1 SINE B4 49 224 0 3 933 1069 321 166 19 chr4 45648223 45648854 -109981266 - Zaphod DNA Tip100 -3192 839 116 3 933 297 0 0 0 chr4 45648874 45648907 -109981213 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 933 333 0 0 0 chr4 45648908 45648945 -109981175 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 933 189 107 0 0 chr4 45648958 45648986 -109981134 + (GGAGAA)n Simple_repeat Simple_repeat 1 28 0 3 933 2400 102 6 18 chr4 45649055 45649386 -109980734 + ORR1A2 LTR MaLR 1 327 0 3 933 370 191 0 0 chr4 45651815 45651883 -109978237 - B3 SINE B2 -73 143 76 3 933 459 0 0 0 chr4 45652060 45652111 -109978009 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 933 327 287 40 69 chr4 45653549 45653650 -109976470 + MER117 DNA MER1_type 100 197 0 3 933 333 0 0 0 chr4 45653977 45654014 -109976106 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 933 270 210 16 31 chr4 45654021 45654085 -109976035 - ID2 SINE ID -17 66 4 3 933 25 0 0 0 chr4 45654092 45654117 -109976003 + AT_rich Low_complexity Low_complexity 1 25 0 3 933 416 299 7 39 chr4 45654121 45654274 -109975846 - ID_B1 SINE B4 -3 221 74 3 933 357 24 0 0 chr4 45655305 45655347 -109974773 - HAL1-3A_ME LINE L1 -840 2018 1977 3 933 388 275 6 6 chr4 45655371 45655532 -109974588 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 933 239 286 104 9 chr4 45655532 45655638 -109974482 - MamRep4096 DNA hAT? -13 413 298 3 933 197 284 71 47 chr4 45655978 45656063 -109974057 + MIRb SINE MIR 88 174 -94 3 933 645 257 7 0 chr4 45656116 45656252 -109973868 - RSINE1 SINE B4 -2 163 27 3 933 569 244 7 43 chr4 45656389 45656530 -109973590 - ID_B1 SINE B4 -2 222 87 3 933 1129 307 95 56 chr4 45656610 45657127 -109972993 - MLT1H LTR MaLR -7 542 6 3 933 221 0 0 33 chr4 45657653 45657683 -109972437 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 3 933 756 188 29 0 chr4 45658800 45658938 -109971182 + RSINE1 SINE B4 5 146 -19 3 933 39 22 0 0 chr4 45658984 45659030 -109971090 + AT_rich Low_complexity Low_complexity 1 46 0 3 933 542 257 9 0 chr4 45659077 45659190 -109970930 + PB1D9 SINE Alu 1 114 -6 3 933 241 219 14 72 chr4 45659926 45659995 -109970125 + L3b LINE CR1 291 355 -127 3 933 211 342 0 0 chr4 45660090 45660166 -109969954 - L2a LINE L2 -48 3378 3303 3 933 191 114 0 28 chr4 45660582 45660618 -109969502 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 3 933 457 278 98 0 chr4 45660841 45660974 -109969146 - MER67A LTR ERV1 0 543 398 3 933 542 225 20 55 chr4 45660966 45660979 -109969141 + ORR1B2-int LTR MaLR 845 857 -1106 3 933 648 248 4 199 chr4 45660979 45661256 -109968864 + ID_B1 SINE B4 2 224 0 3 933 3480 157 62 46 chr4 45661256 45661747 -109968373 + ORR1B2-int LTR MaLR 817 1288 -221 3 933 841 86 8 8 chr4 45661747 45661876 -109968244 + (TCCCC)n Simple_repeat Simple_repeat 4 132 0 3 933 3480 153 65 46 chr4 45661876 45662019 -109968101 + ORR1B2-int LTR MaLR 1289 1433 -76 3 933 4257 145 153 20 chr4 45662019 45662815 -109967305 - RMER19B LTR ERVK 0 902 1 3 933 3480 153 65 46 chr4 45662815 45662891 -109967229 + ORR1B2-int LTR MaLR 1434 1509 0 3 933 1921 147 95 0 chr4 45662893 45663219 -109966901 + ORR1B2 LTR MaLR 3 359 -8 3 933 1516 176 53 32 chr4 45663613 45663811 -109966309 - ORR1C2 LTR MaLR 0 384 176 3 933 369 0 0 0 chr4 45663811 45663852 -109966268 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 933 1516 176 53 32 chr4 45663852 45663934 -109966186 - ORR1C2 LTR MaLR -209 175 98 3 933 1275 48 0 0 chr4 45664586 45664733 -109965387 - B1_Mus1 SINE Alu 0 148 2 3 933 444 37 0 0 chr4 45664978 45665032 -109965088 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 933 286 234 96 46 chr4 45665032 45665220 -109964900 - RMER17A2 LTR ERVK -512 394 193 3 933 306 0 0 0 chr4 45666187 45666221 -109963899 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3 933 349 145 0 3 chr4 45666239 45666303 -109963817 - B2_Mm2 SINE B2 -107 109 47 3 933 983 76 88 20 chr4 45666350 45666498 -109963622 - B2_Mm1t SINE B2 -14 179 22 3 933 21 0 0 0 chr4 45666538 45666559 -109963561 + AT_rich Low_complexity Low_complexity 1 21 0 3 933 228 135 0 0 chr4 45666781 45666818 -109963302 + (TGG)n Simple_repeat Simple_repeat 3 39 0 3 933 494 322 13 13 chr4 45666830 45666984 -109963136 + Helitron3Na_Mam RC Helitron 293 446 -40 3 933 355 250 15 15 chr4 45668053 45668187 -109961933 + L1MEc LINE L1 1349 1482 -4918 3 933 24 0 0 0 chr4 45668218 45668242 -109961878 + AT_rich Low_complexity Low_complexity 1 24 0 3 933 229 319 43 0 chr4 45668242 45668311 -109961809 + ID4_ SINE ID 1 72 -11 3 933 551 236 163 20 chr4 45668776 45668923 -109961197 + B3A SINE B2 1 168 -30 3 933 2061 147 6 33 chr4 45668940 45669055 -109961065 - RLTR28B LTR ERVL -132 349 236 3 933 1245 35 0 0 chr4 45669055 45669196 -109960924 - B1_Mus2 SINE Alu -6 141 1 3 933 2061 147 6 33 chr4 45669196 45669439 -109960681 - RLTR28B LTR ERVL -246 235 1 3 933 462 297 82 99 chr4 45669746 45669989 -109960131 + RMER15 LTR ERVL 337 575 0 3 933 186 43 0 0 chr4 45670553 45670576 -109959544 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 3 933 801 246 128 98 chr4 45670638 45670904 -109959216 + B4A SINE B4 19 292 0 3 933 419 167 14 0 chr4 45670940 45671012 -109959108 + HAL1-3A_ME LINE L1 1976 2048 -810 3 933 492 297 95 9 chr4 45671021 45671357 -109958763 + L1MEc LINE L1 1689 2053 -4347 3 933 270 0 0 0 chr4 45671368 45671398 -109958722 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 933 626 299 22 0 chr4 45671398 45671535 -109958585 - RSINE1 SINE B4 -24 141 2 3 933 2141 142 71 22 chr4 45671584 45671950 -109958170 + ORR1C2 LTR MaLR 1 384 0 3 933 328 244 55 51 chr4 45671998 45672120 -109958000 + PB1D7 SINE Alu 1 120 0 3 933 369 263 92 69 chr4 45672176 45672371 -109957749 - MTD LTR MaLR 0 379 205 3 933 1389 191 29 106 chr4 45672371 45672723 -109957397 - RMER17C LTR ERVK 0 410 90 3 933 450 0 0 0 chr4 45672723 45672773 -109957347 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 933 1389 191 29 106 chr4 45672773 45672823 -109957297 - RMER17C LTR ERVK -321 89 41 3 933 3531 20 8 0 chr4 45672823 45673216 -109956904 - MTA_Mm LTR MaLR 0 396 1 3 933 1389 191 29 106 chr4 45673216 45673256 -109956864 - RMER17C LTR ERVK -370 40 1 3 933 537 247 142 25 chr4 45673260 45673422 -109956698 - MTD LTR MaLR -221 198 18 3 933 1158 225 54 11 chr4 45673451 45673729 -109956391 + Lx8 LINE L1 6600 6889 -584 3 933 307 167 0 16 chr4 45673782 45673843 -109956277 + Lx8 LINE L1 7411 7470 -3 3 933 778 346 44 27 chr4 45673857 45674514 -109955606 + L1MEc LINE L1 2662 3329 -2990 3 933 338 300 117 37 chr4 45674836 45675134 -109954986 + L1M4 LINE L1 3571 3892 -2254 3 933 233 169 212 15 chr4 45675152 45675218 -109954902 + ID4_ SINE ID 3 81 -2 4 933 432 342 51 49 chr4 45675219 45675467 -109954653 + L1M4 LINE L1 3882 4120 -2026 3 933 509 240 53 40 chr4 45675471 45675623 -109954497 - RSINE1 SINE B4 -8 157 4 4 933 536 334 69 13 chr4 45675626 45676017 -109954103 + L1M4 LINE L1 4086 4498 -1648 3 933 753 289 25 20 chr4 45676809 45677010 -109953110 + B4A SINE B4 64 265 -27 4 933 299 85 0 21 chr4 45677025 45677073 -109953047 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 933 291 85 0 0 chr4 45677154 45677201 -109952919 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 933 809 204 7 21 chr4 45677476 45677621 -109952499 + B1_Mur1 SINE Alu 2 144 -5 4 933 666 240 67 15 chr4 45677623 45677799 -109952321 + B3A SINE B2 3 189 -6 4 933 4452 16 0 12 chr4 45678012 45678511 -109951609 - MT2_Mm LTR ERVL 0 493 1 4 933 305 0 0 0 chr4 45678511 45678549 -109951571 - MERVL-int LTR ERVL 0 5485 5448 4 933 383 132 12 50 chr4 45678549 45678629 -109951491 - ORR1A3-int LTR MaLR -1323 640 564 4 933 39586 15 14 0 chr4 45678629 45683920 -109946200 - MERVL-int LTR ERVL -121 5364 1 4 933 4452 16 0 12 chr4 45683920 45684419 -109945701 - MT2_Mm LTR ERVL 0 493 1 4 933 839 256 31 5 chr4 45684605 45684801 -109945319 - ID_B1 SINE B4 -21 203 3 4 933 632 239 86 69 chr4 45686814 45687166 -109942954 - MTEb LTR MaLR -9 370 19 4 933 309 341 117 44 chr4 45687467 45687740 -109942380 + LTR33A LTR ERVL 45 337 -178 4 933 1250 41 0 20 chr4 45687825 45687974 -109942146 + B1_Mm SINE Alu 2 147 0 4 933 609 224 139 33 chr4 45688271 45688426 -109941694 + RMER15 LTR ERVL 360 529 -46 4 933 450 0 0 0 chr4 45688426 45688476 -109941644 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 933 609 224 139 33 chr4 45688476 45688500 -109941620 + RMER15 LTR ERVL 530 558 -17 4 933 330 204 223 11 chr4 45688497 45688591 -109941529 - B4A SINE B4 -95 197 84 4 933 228 67 0 0 chr4 45688594 45688624 -109941496 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 933 448 244 41 40 chr4 45688667 45688936 -109941184 + RMER17C LTR ERVK 1 353 -57 4 933 262 231 84 115 chr4 45689555 45689705 -109940415 + MIRb SINE MIR 3 162 -114 4 933 204 237 156 13 chr4 45689874 45689951 -109940169 + MIRm SINE MIR 93 180 -96 4 933 190 245 20 39 chr4 45690499 45690550 -109939570 + MER5A DNA MER1_type 18 67 -122 4 933 1067 270 46 21 chr4 45690560 45690844 -109939276 + B4 SINE B4 2 292 0 4 933 183 378 11 0 chr4 45691361 45691451 -109938669 - L2 LINE L2 -825 2594 2504 4 933 378 0 0 0 chr4 45691739 45691781 -109938339 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 933 350 350 75 21 chr4 45691813 45692000 -109938120 - ORR1E LTR MaLR -160 199 3 4 933 201 222 0 0 chr4 45692220 45692256 -109937864 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 4 933 983 120 6 0 chr4 45692261 45692419 -109937701 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 4 933 947 99 69 0 chr4 45692419 45692550 -109937570 - B1_Mur4 SINE Alu -10 140 1 4 933 1893 151 72 62 chr4 45692675 45692854 -109937266 + ORR1C2 LTR MaLR 7 170 -214 4 933 600 14 0 0 chr4 45692854 45692923 -109937197 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 933 1893 151 72 62 chr4 45692923 45693117 -109937003 + ORR1C2 LTR MaLR 171 384 0 4 933 256 341 146 58 chr4 45693545 45693888 -109936232 - L3 LINE CR1 -124 4365 3993 4 933 379 330 77 71 chr4 45694334 45694346 -109935774 + MTE2a LTR MaLR 6 16 -343 4 933 1989 131 54 6 chr4 45694346 45694660 -109935460 + ORR1A4 LTR MaLR 1 329 0 4 933 405 293 63 61 chr4 45694660 45694999 -109935121 + MTE2a LTR MaLR 17 365 -14 4 933 789 320 137 41 chr4 45695257 45695674 -109934446 + MLT2B1 LTR ERVL 1 457 -63 4 933 349 267 131 20 chr4 45696397 45696550 -109933570 + Zaphod2 DNA Tip100 111 280 -3244 4 933 480 332 137 28 chr4 45696584 45696977 -109933143 + Zaphod2 DNA Tip100 2738 3173 -351 4 933 664 126 493 7 chr4 45697451 45697603 -109932517 + URR1A DNA MER1_type 1 226 0 4 933 534 336 72 9 chr4 45697666 45698086 -109932034 - ERVL-E-int LTR ERVL -740 5017 4455 4 933 510 118 258 0 chr4 45698424 45698517 -109931603 - B1_Mus2 SINE Alu -9 138 22 4 933 967 33 125 0 chr4 45698563 45698683 -109931437 + B1_Mm SINE Alu 1 135 -12 4 933 44 56 0 0 chr4 45699272 45699344 -109930776 + AT_rich Low_complexity Low_complexity 1 72 0 4 933 787 264 46 5 chr4 45699365 45699559 -109930561 + MER2 DNA MER2_type 2 203 -142 4 933 615 192 82 16 chr4 45699573 45699695 -109930425 + B3 SINE B2 1 130 -86 4 933 325 241 63 0 chr4 45699712 45699791 -109930329 + MER2 DNA MER2_type 258 341 -4 4 933 619 289 106 25 chr4 45699800 45700130 -109929990 - MLT2C2 LTR ERVL -40 357 20 4 933 383 268 72 0 chr4 45701796 45701893 -109928227 + PB1D10 SINE Alu 12 115 -2 4 933 242 236 0 18 chr4 45701914 45701970 -109928150 + ID4 SINE ID 2 56 -27 4 933 416 328 26 48 chr4 45703334 45703471 -109926649 + MER102b DNA MER1_type 1 132 -209 4 933 486 49 0 0 chr4 45703471 45703532 -109926588 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 4 933 416 328 26 48 chr4 45703532 45703583 -109926537 + MER102b DNA MER1_type 133 184 -157 4 933 738 249 50 77 chr4 45703735 45703773 -109926347 - B3 SINE B2 0 216 191 4 933 252 0 0 0 chr4 45703773 45703801 -109926319 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 933 879 238 7 13 chr4 45703801 45703984 -109926136 - B3A SINE B2 -26 190 1 4 933 527 226 76 19 chr4 45704644 45704888 -109925232 - ORR1E LTR MaLR -11 348 52 4 933 274 350 12 0 chr4 45705456 45705519 -109924601 - MIR SINE MIR -100 108 46 4 933 213 39 0 0 chr4 45705519 45705545 -109924575 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 4 933 274 350 12 0 chr4 45705545 45705561 -109924559 - MIR SINE MIR -163 45 29 4 933 2732 34 12 3 chr4 45705812 45706140 -109923980 - IAPEY_LTR LTR ERVK 0 385 55 4 933 219 69 0 0 chr4 45707060 45707089 -109923031 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 933 578 251 132 17 chr4 45707110 45707284 -109922836 - B3A SINE B2 0 198 5 4 933 228 211 225 0 chr4 45707553 45707624 -109922496 - MIR3 SINE MIR -14 194 108 4 933 591 60 0 0 chr4 45707787 45707871 -109922249 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 933 863 291 95 8 chr4 45707877 45708058 -109922062 - B4A SINE B4 -6 286 90 4 933 2300 172 39 12 chr4 45708058 45708464 -109921656 - MTC LTR MaLR 0 421 5 4 933 270 0 0 0 chr4 45708464 45708494 -109921626 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 933 863 291 95 8 chr4 45708494 45708574 -109921546 - B4A SINE B4 -203 89 2 4 933 732 241 26 0 chr4 45708690 45708881 -109921239 - L1MA5 LINE L1 -24 6276 6081 4 933 423 0 0 0 chr4 45708987 45709034 -109921086 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 933 231 253 0 0 chr4 45709034 45709061 -109921059 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 933 405 0 0 0 chr4 45709061 45709106 -109921014 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 933 231 253 0 0 chr4 45709106 45709165 -109920955 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 933 389 345 40 27 chr4 45709306 45709455 -109920665 - MER96 DNA hAT 0 175 25 4 933 238 193 86 17 chr4 45709625 45709683 -109920437 + MER5A DNA MER1_type 2 63 -126 4 933 283 167 15 15 chr4 45709842 45709909 -109920211 + GA-rich Low_complexity Low_complexity 1 67 0 4 933 246 277 35 46 chr4 45710458 45710545 -109919575 - MLT1A1 LTR MaLR -150 258 173 4 933 239 277 90 124 chr4 45710658 45710835 -109919285 - MIR SINE MIR -60 202 32 4 933 501 32 0 0 chr4 45711024 45711087 -109919033 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 933 288 0 0 0 chr4 45711087 45711118 -109919002 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 933 369 0 0 0 chr4 45712007 45712048 -109918072 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 933 1133 312 113 16 chr4 45712055 45712808 -109917312 + L1ME2z LINE L1 5609 6434 -10 4 933 571 197 218 6 chr4 45713762 45713941 -109916179 - ORR1E LTR MaLR -142 217 1 4 933 1390 95 0 5 chr4 45714028 45714218 -109915902 - B2_Mm2 SINE B2 -6 189 1 4 933 615 259 142 70 chr4 45714906 45715222 -109914898 + ORR1E LTR MaLR 1 339 -20 4 933 681 279 73 33 chr4 45715735 45716009 -109914111 + LTR16B1 LTR ERVL 141 425 -55 4 933 229 287 196 42 chr4 45717676 45717916 -109912204 + L3 LINE CR1 4189 4465 -24 4 933 390 42 0 0 chr4 45718334 45718382 -109911738 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 4 933 228 317 85 64 chr4 45719487 45719723 -109910397 - L2b LINE L2 -116 3259 3019 4 933 198 0 0 0 chr4 45719937 45719959 -109910161 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 933 380 306 53 26 chr4 45720103 45720254 -109909866 + MLT1H LTR MaLR 83 237 -312 4 933 1383 190 140 27 chr4 45720305 45720493 -109909627 - ORR1D1 LTR MaLR 0 374 176 4 933 969 79 0 0 chr4 45720493 45720633 -109909487 + (GA)n Simple_repeat Simple_repeat 2 141 0 4 933 1383 190 140 27 chr4 45720633 45720780 -109909340 - ORR1D1 LTR MaLR -199 175 1 4 933 568 329 107 15 chr4 45720951 45721278 -109908842 - ORR1E LTR MaLR 0 359 3 4 933 210 278 82 14 chr4 45721553 45721626 -109908494 + MIR SINE MIR 30 107 -101 4 933 294 323 142 0 chr4 45721955 45722110 -109908010 + MER5A DNA MER1_type 4 180 -9 4 933 393 22 0 0 chr4 45722910 45722956 -109907164 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 933 857 221 50 0 chr4 45723001 45723200 -109906920 - B3 SINE B2 -4 212 4 4 933 345 280 67 91 chr4 45723297 45723462 -109906658 - B4 SINE B4 -118 174 14 4 933 546 126 0 0 chr4 45723551 45723654 -109906466 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 933 183 100 0 0 chr4 45723813 45723843 -109906277 + (TTGGGG)n Simple_repeat Simple_repeat 4 33 0 4 933 812 220 0 35 chr4 45725169 45725343 -109904777 + B3 SINE B2 3 170 -46 4 933 522 241 117 33 chr4 45725380 45725560 -109904560 + B3A SINE B2 3 197 -1 4 933 216 86 0 0 chr4 45725568 45725603 -109904517 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 933 946 235 98 4 chr4 45726222 45726487 -109903633 + B4A SINE B4 1 290 -2 4 933 261 0 0 0 chr4 45726557 45726586 -109903534 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 4 933 300 224 0 0 chr4 45727376 45727474 -109902646 + CT-rich Low_complexity Low_complexity 1 98 0 4 933 274 247 50 38 chr4 45727489 45727569 -109902551 + RMER30 DNA MER1_type 104 184 -18 4 933 2124 147 19 6 chr4 45727898 45728125 -109901995 - ORR1B2 LTR MaLR 0 367 135 4 933 1935 145 42 162 chr4 45728125 45728651 -109901469 - RMER4A LTR ERVK -3 463 1 5 933 2124 147 19 6 chr4 45728651 45728785 -109901335 - ORR1B2 LTR MaLR -233 134 2 4 933 277 272 87 0 chr4 45728871 45728975 -109901145 + L2a LINE L2 3258 3420 -6 5 933 250 246 58 0 chr4 45729287 45729356 -109900764 + MIR SINE MIR 70 142 -66 5 933 207 0 0 0 chr4 45729426 45729449 -109900671 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 933 432 0 0 0 chr4 45729449 45729496 -109900624 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 933 556 206 68 68 chr4 45729522 45729668 -109900452 - B1_Mur1 SINE Alu -2 147 2 5 933 376 290 15 95 chr4 45729727 45729864 -109900256 + RSINE1 SINE B4 9 134 -31 5 933 537 295 84 15 chr4 45729921 45730124 -109899996 - LTR40a LTR ERVL 0 519 303 5 933 604 350 60 63 chr4 45730163 45730495 -109899625 - ORR1E LTR MaLR -4 355 25 5 933 447 286 15 22 chr4 45730528 45730664 -109899456 - LTR40a LTR ERVL -271 248 114 5 933 780 256 30 93 chr4 45730681 45730918 -109899202 + ID_B1 SINE B4 1 222 -2 5 933 356 336 80 0 chr4 45731985 45732122 -109897998 + B1F SINE Alu 1 148 -1 5 933 465 224 89 40 chr4 45732308 45732449 -109897671 + B1F2 SINE Alu 1 149 0 5 933 545 0 15 0 chr4 45733098 45733163 -109896957 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 5 933 445 219 9 0 chr4 45733972 45734207 -109895913 + (CA)n Simple_repeat Simple_repeat 1 237 0 5 933 521 185 11 11 chr4 45734225 45734405 -109895715 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 933 229 260 110 0 chr4 45734466 45734539 -109895581 + L2b LINE L2 3035 3115 -260 5 933 909 140 0 7 chr4 45734744 45734888 -109895232 + B1_Mur3 SINE Alu 1 143 -6 5 933 21 0 0 0 chr4 45734890 45734911 -109895209 + AT_rich Low_complexity Low_complexity 1 21 0 5 933 469 80 27 0 chr4 45734911 45734986 -109895134 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 933 800 284 36 5 chr4 45735435 45735658 -109894462 + MLT1D LTR MaLR 276 505 0 5 933 183 184 0 0 chr4 45735760 45735798 -109894322 + GA-rich Low_complexity Low_complexity 4 41 0 5 933 197 275 163 11 chr4 45736088 45736180 -109893940 - MIRm SINE MIR -117 159 54 5 933 181 234 24 83 chr4 45736279 45736363 -109893757 - MIRm SINE MIR -85 191 113 5 933 249 33 0 0 chr4 45736651 45736681 -109893439 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 5 933 550 227 65 43 chr4 45737357 45737495 -109892625 + RSINE1 SINE B4 2 142 -23 5 933 366 61 0 0 chr4 45739226 45739275 -109890845 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 5 933 2032 102 49 0 chr4 45739368 45739672 -109890448 + ORR1A2 LTR MaLR 1 319 -8 5 933 234 326 26 78 chr4 45739883 45740036 -109890084 - MLT1J LTR MaLR -196 316 172 5 933 320 305 16 25 chr4 45740978 45741099 -109889021 + Charlie4z DNA MER1_type 15 134 -33 5 933 211 346 65 9 chr4 45741159 45741267 -109888853 + MIR SINE MIR 18 131 -77 5 933 289 119 16 33 chr4 45741267 45741328 -109888792 + CT-rich Low_complexity Low_complexity 1 60 0 5 933 905 198 22 70 chr4 45741491 45741719 -109888401 - ID_B1 SINE B4 -6 218 2 5 933 235 294 75 11 chr4 45741947 45742040 -109888080 - L2c LINE L2 -207 3180 3082 5 116 285 271 252 87 chr4 45743923 45744175 -109885945 + L1ME1 LINE L1 5803 6109 -70 5 934 443 238 76 92 chr4 45744175 45744360 -109885760 + B3A SINE B2 2 183 -15 5 934 285 251 124 119 chr4 45744360 45744401 -109885719 + L1ME1 LINE L1 6110 6138 -41 5 934 344 314 56 12 chr4 45744428 45744589 -109885531 + L1MD2 LINE L1 6008 6175 -184 5 934 414 185 0 0 chr4 45744589 45744670 -109885450 + GA-rich Low_complexity Low_complexity 5 85 0 5 934 291 295 139 0 chr4 45744696 45744818 -109885302 + L1MD1 LINE L1 6083 6221 -21 5 934 440 362 0 22 chr4 45744977 45745155 -109884965 + LTR78 LTR ERV1 1118 1291 -13 5 934 1155 263 76 60 chr4 45745228 45745608 -109884512 + MTD LTR MaLR 20 405 -14 5 934 1017 251 252 64 chr4 45745660 45746159 -109883961 - MTC-int LTR MaLR -647 611 19 5 934 225 239 144 18 chr4 45746299 45746410 -109883710 + MER2 DNA MER2_type 28 152 -193 5 934 288 130 36 36 chr4 45746411 45746467 -109883653 + B1F SINE Alu 93 148 -1 5 934 261 299 82 0 chr4 45746470 45746567 -109883553 + MER2 DNA MER2_type 136 240 -105 5 934 261 0 0 0 chr4 45747500 45747529 -109882591 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 934 527 189 158 0 chr4 45747885 45748012 -109882108 - B1_Mur1 SINE Alu 0 149 3 5 934 348 210 84 24 chr4 45748032 45748115 -109882005 + B1_Mus2 SINE Alu 60 147 0 5 934 3065 134 22 2 chr4 45748224 45748757 -109881363 + RMER19A LTR ERVK 1 604 -133 5 934 222 261 297 2 chr4 45748930 45749049 -109881071 - MIR SINE MIR -101 167 13 5 934 371 254 50 43 chr4 45749976 45750116 -109880004 + B1F SINE Alu 9 149 0 5 934 566 204 28 0 chr4 45751284 45751392 -109878728 + PB1D7 SINE Alu 9 119 -1 5 934 414 0 0 0 chr4 45752375 45752421 -109877699 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 934 364 305 0 27 chr4 45752994 45753210 -109876910 + CT-rich Low_complexity Low_complexity 1 210 0 5 934 187 158 79 0 chr4 45754540 45754578 -109875542 + MIR SINE MIR 110 150 -58 5 934 23 0 0 0 chr4 45755032 45755055 -109875065 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 247 140 20 0 chr4 45755197 45755247 -109874873 - RSINE1 SINE B4 -104 61 11 5 934 227 323 71 0 chr4 45755290 45755389 -109874731 + LTR37A LTR ERV1 288 393 -33 5 934 278 255 93 68 chr4 45755518 45755594 -109874526 - MLT1E2 LTR MaLR -168 459 389 5 934 1904 148 135 2 chr4 45755594 45755987 -109874133 - BGLII_A LTR ERVK 0 445 1 5 934 278 255 93 68 chr4 45755987 45756028 -109874092 - MLT1E2 LTR MaLR -239 388 339 5 934 2299 164 12 14 chr4 45756160 45756576 -109873544 - MTC LTR MaLR -4 417 3 5 934 664 173 0 131 chr4 45756758 45756803 -109873317 + B1_Mus2 SINE Alu 1 32 -115 5 934 761 59 246 0 chr4 45756803 45756921 -109873199 - B1_Mus1 SINE Alu 0 148 2 5 934 664 173 0 131 chr4 45756921 45757035 -109873085 + B1_Mus2 SINE Alu 33 139 -8 5 934 183 146 0 0 chr4 45757052 45757093 -109873027 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 934 438 214 11 22 chr4 45757147 45757229 -109872891 + ID_B1 SINE B4 128 210 -14 5 934 306 0 0 0 chr4 45757229 45757263 -109872857 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 5 934 869 178 12 30 chr4 45757274 45757442 -109872678 + B2_Mm2 SINE B2 1 165 -30 5 934 786 211 0 0 chr4 45757677 45757852 -109872268 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 934 696 244 0 0 chr4 45757810 45757990 -109872130 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 934 216 260 0 0 chr4 45757990 45758040 -109872080 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 934 844 241 174 33 chr4 45758260 45758565 -109871555 + MTEa LTR MaLR 26 373 -6 5 934 487 269 130 48 chr4 45759202 45759472 -109870648 + B4A SINE B4 1 292 0 5 934 300 293 35 35 chr4 45759490 45759660 -109870460 + (CATA)n Simple_repeat Simple_repeat 3 172 0 5 934 322 186 0 23 chr4 45759670 45759758 -109870362 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 934 252 86 0 0 chr4 45760309 45760344 -109869776 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 934 771 229 62 31 chr4 45760788 45760982 -109869138 - B3 SINE B2 -13 203 4 5 934 375 46 45 15 chr4 45760983 45761049 -109869071 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 5 934 416 279 81 70 chr4 45761055 45761475 -109868645 + L1M2 LINE L1 5097 5535 -756 5 934 1029 189 18 13 chr4 45762812 45763037 -109867083 - URR1A DNA MER1_type 0 226 1 5 934 874 140 6 22 chr4 45763671 45763854 -109866266 + GA-rich Low_complexity Low_complexity 1 180 0 5 934 536 332 67 5 chr4 45764022 45764216 -109865904 + MLT1J LTR MaLR 106 311 -201 5 934 489 34 0 0 chr4 45764536 45764595 -109865525 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 934 367 202 24 37 chr4 45764624 45764706 -109865414 - ID4 SINE ID 0 83 3 5 934 418 269 132 48 chr4 45764937 45765187 -109864933 + B4A SINE B4 4 274 -18 5 934 444 290 164 35 chr4 45765327 45765638 -109864482 + ORR1E LTR MaLR 1 351 -8 5 934 181 200 0 0 chr4 45765920 45765960 -109864160 + L3 LINE CR1 4100 4139 -350 5 934 405 0 0 0 chr4 45767013 45767058 -109863062 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 934 338 299 10 0 chr4 45767639 45767736 -109862384 - MER103 DNA DNA -63 103 6 5 934 478 288 131 5 chr4 45769580 45769779 -109860341 - ID_B1 SINE B4 0 224 1 5 934 202 259 87 61 chr4 45770026 45770141 -109859979 - MIRc SINE MIR -139 129 12 5 934 269 236 28 0 chr4 45770217 45770289 -109859831 - MIR SINE MIR -107 155 82 5 934 452 311 116 101 chr4 45770498 45770955 -109859165 - MLT1F2 LTR MaLR 0 560 97 5 934 360 0 0 0 chr4 45772535 45772575 -109857545 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 934 726 175 0 0 chr4 45773401 45773578 -109856542 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 934 449 192 8 0 chr4 45773598 45773728 -109856392 + (CA)n Simple_repeat Simple_repeat 1 131 0 5 934 738 268 43 17 chr4 45774032 45774264 -109855856 - MLT1D LTR MaLR 0 505 268 5 934 592 255 96 19 chr4 45774349 45774557 -109855563 + B4A SINE B4 3 226 -66 5 934 256 222 0 31 chr4 45774644 45774709 -109855411 - MLT1D LTR MaLR -332 173 111 5 934 764 60 0 0 chr4 45774707 45774807 -109855313 + B1_Mus1 SINE Alu 3 102 -46 5 934 207 0 0 0 chr4 45774807 45774830 -109855290 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 934 1364 196 40 107 chr4 45774860 45775056 -109855064 + ORR1D1 LTR MaLR 1 169 -205 5 934 531 0 0 0 chr4 45775056 45775115 -109855005 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 934 1364 196 40 107 chr4 45775115 45775319 -109854801 + ORR1D1 LTR MaLR 170 374 0 5 934 405 283 95 32 chr4 45775433 45775685 -109854435 + L1MD2 LINE L1 6070 6337 -22 5 934 266 149 20 147 chr4 45775741 45775843 -109854277 + B3A SINE B2 108 196 -2 5 934 211 350 176 20 chr4 45775858 45775960 -109854160 + PB1D7 SINE Alu 3 120 0 5 934 650 190 0 64 chr4 45777391 45777548 -109852572 + B1F SINE Alu 3 149 0 6 934 233 206 43 0 chr4 45778789 45778881 -109851239 + GA-rich Low_complexity Low_complexity 1 96 0 6 934 219 69 0 0 chr4 45779021 45779050 -109851070 + (G)n Simple_repeat Simple_repeat 1 29 0 6 934 337 232 73 0 chr4 45782204 45782286 -109847834 + ID_B1 SINE B4 137 224 0 6 934 224 265 46 10 chr4 45782693 45782787 -109847333 - MIR SINE MIR -127 141 45 6 934 306 0 0 0 chr4 45784430 45784464 -109845656 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 934 363 366 82 0 chr4 45785474 45785608 -109844512 - RSINE1 SINE B4 -20 145 1 6 934 225 0 0 0 chr4 45785616 45785641 -109844479 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 934 845 170 0 0 chr4 45786169 45786310 -109843810 + B1_Mur2 SINE Alu 9 149 0 6 934 232 220 132 25 chr4 45786354 45786475 -109843645 - L1MC3 LINE L1 -1758 6027 5894 6 934 1409 54 27 0 chr4 45786487 45786672 -109843448 - B2_Mm2 SINE B2 -5 190 1 6 934 473 239 85 8 chr4 45786881 45786999 -109843121 + ID_B1 SINE B4 29 155 -69 6 934 1042 116 0 0 chr4 45787000 45787147 -109842973 + B1_Mus1 SINE Alu 2 148 0 6 934 353 265 10 0 chr4 45787167 45787265 -109842855 + ID_B1 SINE B4 123 221 -3 6 934 1042 267 34 18 chr4 45787378 45787759 -109842361 - L1MC4 LINE L1 -2390 3824 3438 6 934 522 170 14 7 chr4 45788143 45788291 -109841829 + (TG)n Simple_repeat Simple_repeat 1 149 0 6 934 382 246 144 0 chr4 45788291 45788409 -109841711 - ID_B1 SINE B4 -9 215 81 6 934 236 236 9 26 chr4 45788519 45788632 -109841488 + GA-rich Low_complexity Low_complexity 4 114 0 6 934 1522 187 79 12 chr4 45788805 45789135 -109840985 - MTC LTR MaLR -1 420 69 6 934 354 364 46 46 chr4 45789140 45789321 -109840799 - L1MC4 LINE L1 -4986 1229 1040 6 934 1226 132 16 0 chr4 45789321 45789511 -109840609 - B2_Mm2 SINE B2 -1 194 2 6 934 354 364 46 46 chr4 45789511 45789718 -109840402 - L1MC4 LINE L1 -5176 1039 841 6 934 933 126 0 7 chr4 45790127 45790271 -109839849 - B1_Mus1 SINE Alu 0 148 6 6 934 518 136 0 0 chr4 45790273 45790354 -109839766 - MTC LTR MaLR -340 81 1 6 934 331 261 60 17 chr4 45790690 45790807 -109839313 - MER45R DNA Tip100 -7 1574 1453 6 934 263 239 194 0 chr4 45790824 45790891 -109839229 + RSINE1 SINE B4 48 127 -38 6 934 261 0 0 0 chr4 45790913 45790942 -109839178 + (CCTG)n Simple_repeat Simple_repeat 3 31 0 6 934 866 36 0 9 chr4 45790949 45791060 -109839060 + (TCTA)n Simple_repeat Simple_repeat 2 111 0 6 934 304 125 0 82 chr4 45791060 45791121 -109838999 - Lx7 LINE L1 -1712 5984 5929 6 934 2284 184 2 20 chr4 45791129 45791578 -109838542 + L1_Mur3 LINE L1 2523 2963 -2917 6 934 355 215 104 21 chr4 45791601 45791735 -109838385 + B3 SINE B2 1 168 -30 6 934 193 467 0 0 chr4 45792124 45792231 -109837889 + MIR SINE MIR 30 136 -72 6 934 538 268 112 68 chr4 45792246 45792555 -109837565 + RLTR12B LTR ERVK 15 335 -233 6 934 468 0 0 0 chr4 45792555 45792607 -109837513 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 934 372 266 109 82 chr4 45792607 45792723 -109837397 + RLTR12B LTR ERVK 232 344 -15 6 934 237 254 57 66 chr4 45792771 45792893 -109837227 - MIRc SINE MIR -87 181 61 6 934 294 322 99 63 chr4 45793581 45794055 -109836065 + L1ME3A LINE L1 5648 6138 -35 6 934 1631 180 108 43 chr4 45794081 45794452 -109835668 - MTD LTR MaLR -13 406 12 6 934 370 190 141 12 chr4 45794464 45794549 -109835571 + RSINE1 SINE B4 20 115 -50 6 934 264 100 0 0 chr4 45794551 45794591 -109835529 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 934 903 243 24 14 chr4 45795900 45796113 -109834007 + B3 SINE B2 2 216 0 6 934 1392 245 112 18 chr4 45796181 45796564 -109833556 - MTD LTR MaLR 0 419 1 6 934 376 161 0 24 chr4 45796836 45796919 -109833201 + CT-rich Low_complexity Low_complexity 1 81 0 6 934 854 149 21 0 chr4 45796919 45797060 -109833060 - B1_Mur4 SINE Alu -6 144 1 6 934 415 322 56 57 chr4 45797588 45797884 -109832236 + RLTR12B LTR ERVK 3 288 -280 6 934 2052 174 35 0 chr4 45798398 45798765 -109831355 + RLTR14 LTR ERV1 3 382 0 6 934 767 213 7 0 chr4 45799476 45799617 -109830503 + RSINE1 SINE B4 1 142 -23 6 934 24 0 0 0 chr4 45799639 45799663 -109830457 + AT_rich Low_complexity Low_complexity 1 24 0 6 934 543 251 148 0 chr4 45799664 45799847 -109830273 + B3 SINE B2 1 210 -6 6 934 1110 269 103 37 chr4 45800810 45801161 -109828959 + MTE2b LTR MaLR 2 375 -4 6 934 193 288 15 0 chr4 45801162 45801228 -109828892 + MIR3 SINE MIR 111 177 -31 6 934 305 338 88 22 chr4 45801536 45801672 -109828448 + MLT1J LTR MaLR 39 183 -329 6 934 2000 120 24 48 chr4 45803040 45803460 -109826660 - RMER17C LTR ERVK 0 410 1 6 934 940 277 170 37 chr4 45804080 45804485 -109825635 - MT2A LTR ERVL -74 459 1 6 934 463 271 34 0 chr4 45804617 45804735 -109825385 + MTEb LTR MaLR 258 379 0 6 934 667 304 211 26 chr4 45805279 45805705 -109824415 - MLT1D LTR MaLR 0 505 1 6 934 413 241 23 0 chr4 45805795 45805882 -109824238 + ID_B1 SINE B4 113 201 -23 6 934 439 17 0 32 chr4 45805882 45805944 -109824176 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 6 934 21 0 0 0 chr4 45806036 45806057 -109824063 + AT_rich Low_complexity Low_complexity 1 21 0 6 934 333 158 52 13 chr4 45806134 45806211 -109823909 - B3A SINE B2 -117 81 2 6 934 412 348 90 31 chr4 45806536 45806791 -109823329 - LTR33B LTR ERVL -5 498 229 6 934 683 197 7 14 chr4 45807056 45807200 -109822920 - B1_Mur1 SINE Alu 0 149 7 6 934 216 163 0 0 chr4 45807975 45808018 -109822102 + A-rich Low_complexity Low_complexity 1 43 0 6 934 191 61 30 0 chr4 45808213 45808246 -109821874 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 6 934 259 157 56 11 chr4 45808272 45808362 -109821758 - Lx5 LINE L1 -11 7039 6946 6 934 180 0 0 0 chr4 45808759 45808779 -109821341 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 934 300 319 21 32 chr4 45809003 45809097 -109821023 - L1MEg LINE L1 -4142 1942 1850 6 934 190 286 32 0 chr4 45809653 45809716 -109820404 - L3 LINE CR1 -125 4364 4300 6 934 527 43 14 0 chr4 45810210 45810280 -109819840 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 6 934 341 43 21 0 chr4 45812516 45812563 -109817557 + (TTTTC)n Simple_repeat Simple_repeat 5 52 0 6 934 222 171 0 0 chr4 45812567 45812608 -109817512 + CT-rich Low_complexity Low_complexity 1 41 0 6 934 1283 96 16 0 chr4 45812608 45812795 -109817325 - B2_Mm2 SINE B2 -3 192 3 6 934 396 0 0 0 chr4 45812891 45812935 -109817185 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 934 369 0 0 0 chr4 45812935 45812975 -109817145 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 934 252 86 0 0 chr4 45813165 45813200 -109816920 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 6 934 243 208 0 0 chr4 45813811 45813864 -109816256 - PB1D7 SINE Alu -1 119 67 6 934 723 268 18 18 chr4 45814366 45814583 -109815537 - ID_B1 SINE B4 -3 221 5 6 934 1595 36 0 0 chr4 45814751 45814944 -109815176 + B2_Mm1a SINE B2 1 193 0 6 934 450 286 81 21 chr4 45817252 45817438 -109812682 + L1MB7 LINE L1 5967 6163 -21 6 934 886 130 0 11 chr4 45817783 45817962 -109812158 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 934 400 229 67 0 chr4 45818175 45818280 -109811840 - PB1D10 SINE Alu -1 116 5 6 934 757 249 0 11 chr4 45818186 45818365 -109811755 - ID_B1 SINE B4 -45 179 3 6 934 644 278 73 29 chr4 45818620 45818824 -109811296 + MTEa LTR MaLR 84 296 -83 6 934 834 246 9 9 chr4 45819090 45819308 -109810812 - B3A SINE B2 -2 214 2 6 934 766 278 38 0 chr4 45820341 45820550 -109809570 + ID_B1 SINE B4 1 217 -7 6 934 405 0 0 0 chr4 45820550 45820595 -109809525 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 934 198 303 104 13 chr4 45820649 45820726 -109809394 - L2a LINE L2 -1 3425 3342 6 934 219 122 23 47 chr4 45820950 45820993 -109809127 + G-rich Low_complexity Low_complexity 3 44 0 6 934 758 272 41 0 chr4 45821604 45821799 -109808321 - B4 SINE B4 -4 288 86 6 934 969 62 0 0 chr4 45821830 45821960 -109808160 - B2_Mm2 SINE B2 -65 130 1 6 934 265 250 28 0 chr4 45821960 45822030 -109808090 - B4 SINE B4 -197 95 24 6 934 399 250 70 6 chr4 45822030 45822187 -109807933 - MER44A DNA MER2_type -81 258 92 6 934 457 141 47 0 chr4 45822501 45822523 -109807597 + ORR1A3 LTR MaLR 238 259 -67 6 934 180 0 0 0 chr4 45822523 45822543 -109807577 + (TTG)n Simple_repeat Simple_repeat 1 20 0 6 934 457 141 47 0 chr4 45822543 45822605 -109807515 + ORR1A3 LTR MaLR 260 325 -1 6 934 227 218 18 0 chr4 45822654 45822709 -109807411 - MIR SINE MIR -76 132 77 6 934 759 135 22 15 chr4 45823179 45823314 -109806806 + B1_Mur4 SINE Alu 15 150 0 6 934 1028 206 9 29 chr4 45824880 45825090 -109805030 + B3 SINE B2 11 216 0 6 934 1615 31 0 0 chr4 45825110 45825302 -109804818 + B2_Mm1a SINE B2 2 193 0 6 934 473 32 16 0 chr4 45825435 45825498 -109804622 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 934 252 0 0 0 chr4 45825579 45825607 -109804513 + (CTG)n Simple_repeat Simple_repeat 1 28 0 6 934 786 166 126 73 chr4 45827035 45827282 -109802838 - RLTR28 LTR ERVL 0 524 265 6 934 1698 129 150 0 chr4 45827282 45827568 -109802552 + ORR1A4 LTR MaLR 1 329 0 6 934 1015 105 6 0 chr4 45827568 45827730 -109802390 + ORR1A4-int LTR MaLR 1 163 -1800 6 934 353 198 99 0 chr4 45827960 45828041 -109802079 + PB1 SINE Alu 37 125 -2 6 934 248 0 0 30 chr4 45828050 45828083 -109802037 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 6 934 499 238 182 0 chr4 45828086 45828212 -109801908 - RSINE1 SINE B4 -2 163 15 7 934 1640 64 39 0 chr4 45829308 45829541 -109800579 + ORR1A2 LTR MaLR 86 327 0 7 934 519 291 101 65 chr4 45829764 45830040 -109800080 + RCHARR1 DNA MER1_type 37 322 -652 7 934 207 0 0 0 chr4 45830067 45830090 -109800030 + (T)n Simple_repeat Simple_repeat 1 23 0 7 934 248 200 108 0 chr4 45830100 45830165 -109799955 + RCHARR1 DNA MER1_type 325 396 -578 7 934 720 240 71 9 chr4 45830166 45830376 -109799744 - ID_B1 SINE B4 0 224 2 7 934 974 228 64 100 chr4 45830377 45830525 -109799595 + RCHARR1 DNA MER1_type 596 735 -239 7 934 1256 177 10 0 chr4 45830525 45830734 -109799386 - B3 SINE B2 -5 211 1 7 934 974 228 64 100 chr4 45830734 45830946 -109799174 + RCHARR1 DNA MER1_type 736 943 -31 7 934 387 0 0 0 chr4 45831194 45831237 -109798883 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 934 920 119 0 14 chr4 45831240 45831385 -109798735 - B1_Mur4 SINE Alu -6 144 2 7 934 208 263 53 0 chr4 45831970 45832027 -109798093 - L3 LINE CR1 -92 4397 4338 7 934 313 256 49 0 chr4 45833268 45833350 -109796770 - MIRb SINE MIR -80 188 103 7 934 329 293 67 8 chr4 45833445 45833579 -109796541 - MER68 LTR ERVL -25 538 397 7 934 248 295 118 45 chr4 45833617 45833727 -109796393 - MER68 LTR ERVL -239 324 207 7 934 463 261 99 0 chr4 45834108 45834250 -109795870 - MER68 LTR ERVL -407 156 1 7 934 825 25 240 25 chr4 45834479 45834600 -109795520 - B1_Mus1 SINE Alu 0 148 2 7 934 426 319 99 38 chr4 45834704 45834916 -109795204 - ORR1E LTR MaLR -103 256 32 7 934 339 30 134 0 chr4 45835345 45835412 -109794708 + T-rich Low_complexity Low_complexity 4 79 0 7 934 1154 69 14 0 chr4 45835422 45835567 -109794553 - B1_Mus1 SINE Alu 0 148 2 7 934 1497 138 5 0 chr4 45836530 45836754 -109793366 + URR1B DNA MER1_type 1 225 0 7 934 209 341 47 0 chr4 45837667 45837752 -109792368 + MIR3 SINE MIR 89 177 -31 7 934 681 13 0 0 chr4 45838537 45838615 -109791505 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 7 934 21 0 0 0 chr4 45839731 45839752 -109790368 + GC_rich Low_complexity Low_complexity 1 21 0 7 934 23 54 0 0 chr4 45839757 45839794 -109790326 + GC_rich Low_complexity Low_complexity 1 37 0 7 934 465 242 21 12 chr4 45840367 45840494 -109789626 - B3 SINE B2 -60 135 1 7 934 2939 118 53 55 chr4 45840720 45841248 -109788872 + RLTR11A2 LTR ERVK 1 527 0 7 934 381 151 770 0 chr4 45841925 45842045 -109788075 + B3 SINE B2 1 216 0 7 934 327 130 0 0 chr4 45842065 45842119 -109788001 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 7 934 249 33 0 0 chr4 45842402 45842432 -109787688 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 934 259 285 168 0 chr4 45842550 45842687 -109787433 + L3 LINE CR1 4308 4467 -22 7 934 388 277 88 6 chr4 45844057 45844217 -109785903 + LTR50 LTR ERVL 477 649 -146 7 934 431 316 97 21 chr4 45844763 45845051 -109785069 + ERVL-E-int LTR ERVL 972 1281 -4386 7 934 940 270 53 0 chr4 45845067 45845352 -109784768 + L1MA4A LINE L1 5632 5931 -372 7 934 321 26 0 0 chr4 45845364 45845402 -109784718 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 934 652 244 84 84 chr4 45845601 45845718 -109784402 - L1_Mur3 LINE L1 -319 5561 5431 7 934 195 42 0 0 chr4 45845718 45845742 -109784378 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 934 652 244 84 84 chr4 45845742 45845946 -109784174 - L1_Mur3 LINE L1 -450 5430 5240 7 934 2042 309 64 31 chr4 45845941 45846885 -109783235 + Lx8 LINE L1 6497 7471 -2 7 934 354 356 24 39 chr4 45846902 45846931 -109783189 - RMER12 LTR ERVK -302 1020 991 7 934 643 279 100 41 chr4 45846931 45847200 -109782920 + B4A SINE B4 2 286 -6 7 934 354 356 24 39 chr4 45847200 45847424 -109782696 - RMER12 LTR ERVK -332 990 771 7 934 243 337 12 0 chr4 45847424 45847510 -109782610 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 934 386 61 0 0 chr4 45847510 45847559 -109782561 + HAL1-3A_ME LINE L1 1976 2024 -834 7 934 369 241 63 27 chr4 45847733 45847844 -109782276 + MT2A LTR ERVL 3 117 -416 7 934 1169 265 52 47 chr4 45847752 45848096 -109782024 + MTE2b LTR MaLR 19 364 -15 7 934 1008 196 41 5 chr4 45848161 45848382 -109781738 + RCHARR1 DNA MER1_type 309 537 -437 7 934 240 86 0 0 chr4 45848420 45848455 -109781665 + (T)n Simple_repeat Simple_repeat 1 35 0 7 934 1662 140 9 79 chr4 45848474 45848815 -109781305 + RLTRETN_Mm LTR ERVK 1 317 -5 7 934 1273 85 25 25 chr4 45848816 45849020 -109781100 - MMETn-int LTR ERVK -337 4507 4304 7 934 223 93 139 0 chr4 45849024 45849067 -109781053 + PB1D9 SINE Alu 71 119 -1 7 934 1250 231 116 45 chr4 45849095 45849475 -109780645 + RCHARR1 DNA MER1_type 567 973 -1 7 934 3007 14 5 97 chr4 45849728 45850132 -109779988 - IAPLTR1_Mm LTR ERVK 0 367 1 7 934 25446 18 1 2 chr4 45850132 45853092 -109777028 - IAPEz-int LTR ERVK 0 6481 3525 7 934 889 88 24 0 chr4 45853092 45853217 -109776903 - IAPEz-int LTR ERVK -2770 4910 4783 7 934 1682 114 0 12 chr4 45853212 45853461 -109776659 - IAPEz-int LTR ERVK -5183 2497 2252 7 934 434 66 0 32 chr4 45853466 45853529 -109776591 - IAPEz-int LTR ERVK -5062 1419 1359 7 934 3322 74 36 13 chr4 45853529 45854243 -109775877 - IAPEz-int LTR ERVK -5819 662 8 7 934 3021 11 5 97 chr4 45854243 45854647 -109775473 - IAPLTR1_Mm LTR ERVK 0 367 1 7 934 294 87 0 0 chr4 45855158 45855204 -109774916 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 934 1138 95 0 7 chr4 45855261 45855409 -109774711 - B1_Mus1 SINE Alu 0 148 2 7 934 606 255 49 7 chr4 45855433 45855575 -109774545 - B1_Mur2 SINE Alu -1 148 1 7 934 973 230 14 36 chr4 45855622 45855843 -109774277 - B3 SINE B2 0 216 1 7 934 1175 75 0 20 chr4 45856426 45856576 -109773544 + B1_Mus1 SINE Alu 2 148 0 7 934 203 0 37 0 chr4 45856576 45856603 -109773517 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 7 934 1038 260 160 29 chr4 45856954 45857347 -109772773 + MTD LTR MaLR 13 388 -31 7 934 284 300 31 42 chr4 45857618 45857748 -109772372 - MLT1A0 LTR MaLR -34 374 209 7 934 215 146 24 0 chr4 45857787 45857828 -109772292 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 7 934 514 229 227 6 chr4 45857860 45858036 -109772084 - ID_B1 SINE B4 -7 217 3 7 934 1366 108 0 35 chr4 45858535 45858736 -109771384 - B2_Mm2 SINE B2 0 195 2 7 934 183 350 123 41 chr4 45859127 45859297 -109770823 + L3 LINE CR1 3523 3706 -783 7 934 954 127 0 0 chr4 45860210 45860368 -109769752 + (TTC)n Simple_repeat Simple_repeat 3 160 0 7 934 204 273 0 0 chr4 45860368 45860412 -109769708 + C-rich Low_complexity Low_complexity 2 45 0 7 934 1223 104 0 0 chr4 45860414 45860578 -109769542 - B2_Mm2 SINE B2 -31 164 1 7 934 271 304 14 0 chr4 45860860 45860929 -109769191 + MLT1B LTR MaLR 50 119 -271 7 934 926 274 193 28 chr4 45862242 45862969 -109767151 - L1MA6 LINE L1 -5 6295 5449 7 934 186 250 0 0 chr4 45863733 45863789 -109766331 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 934 29 0 0 0 chr4 45863801 45863830 -109766290 + AT_rich Low_complexity Low_complexity 1 29 0 7 934 1076 194 50 0 chr4 45863836 45864037 -109766083 - B3 SINE B2 -5 211 1 7 934 877 46 0 0 chr4 45864118 45864226 -109765894 - B1_Mus2 SINE Alu 0 147 40 7 934 302 197 75 50 chr4 45864161 45864241 -109765879 - RLTR25B LTR ERVK -519 509 428 7 934 192 77 0 0 chr4 45864947 45864973 -109765147 + (CTAA)n Simple_repeat Simple_repeat 1 26 0 7 934 219 250 0 0 chr4 45864976 45865044 -109765076 + CT-rich Low_complexity Low_complexity 3 70 0 7 934 345 295 0 51 chr4 45865070 45865188 -109764932 - B1F1 SINE Alu -21 128 17 7 934 243 0 0 0 chr4 45865531 45865558 -109764562 + (T)n Simple_repeat Simple_repeat 1 27 0 7 934 1200 62 0 0 chr4 45865558 45865704 -109764416 - B1_Mm SINE Alu 0 147 2 7 934 227 106 43 0 chr4 45866352 45866399 -109763721 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 7 934 23 0 0 0 chr4 45866799 45866822 -109763298 + AT_rich Low_complexity Low_complexity 1 23 0 7 934 321 306 8 8 chr4 45866891 45867016 -109763104 - L1MA4 LINE L1 -71 6226 6102 7 934 864 241 108 47 chr4 45867146 45867424 -109762696 - L1MA4 LINE L1 -408 5892 5598 7 934 619 175 165 8 chr4 45867428 45867555 -109762565 - B1F2 SINE Alu -2 147 1 7 934 1036 160 74 11 chr4 45867802 45867991 -109762129 + B3 SINE B2 7 207 -9 7 934 543 69 0 0 chr4 45867991 45868063 -109762057 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 934 27 0 0 0 chr4 45868717 45868744 -109761376 + AT_rich Low_complexity Low_complexity 1 27 0 7 934 762 201 6 89 chr4 45869176 45869356 -109760764 - RSINE1 SINE B4 0 165 1 7 934 645 119 0 0 chr4 45869497 45869598 -109760522 + (TTTC)n Simple_repeat Simple_repeat 1 101 0 7 934 1394 75 21 5 chr4 45869641 45869830 -109760290 - B2_Mm2 SINE B2 -2 193 2 7 934 1214 68 0 0 chr4 45869851 45869998 -109760122 - B1_Mus1 SINE Alu 0 148 2 7 934 285 198 0 30 chr4 45870396 45870495 -109759625 + CT-rich Low_complexity Low_complexity 2 97 0 7 934 342 303 21 64 chr4 45870561 45870702 -109759418 + Arthur1B DNA Tip100 12 146 -1079 7 934 473 66 21 62 chr4 45871137 45871234 -109758886 + (GGGA)n Simple_repeat Simple_repeat 3 95 0 7 934 261 314 14 0 chr4 45871504 45871574 -109758546 - B4 SINE B4 -8 284 214 7 934 261 244 0 118 chr4 45871577 45871670 -109758450 - B3 SINE B2 0 216 135 7 934 226 215 6 23 chr4 45871776 45871845 -109758275 + BC1_Mm scRNA scRNA 16 81 -2 7 934 986 281 39 79 chr4 45873138 45873494 -109756626 - ORR1E LTR MaLR -16 343 2 7 934 288 170 0 0 chr4 45873696 45873749 -109756371 + (CAT)n Simple_repeat Simple_repeat 1 53 0 7 934 370 313 151 18 chr4 45873752 45873970 -109756150 - MIRb SINE MIR -8 260 14 7 934 848 252 239 16 chr4 45874199 45874509 -109755611 - MTEb LTR MaLR 0 379 1 7 934 678 238 135 12 chr4 45874674 45874844 -109755276 + ORR1E LTR MaLR 1 191 -168 7 934 327 92 39 26 chr4 45874849 45874927 -109755193 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 7 934 626 261 36 67 chr4 45874927 45875120 -109755000 + ORR1E LTR MaLR 168 354 -5 7 934 198 0 0 0 chr4 45875131 45875153 -109754967 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 116 308 289 24 12 chr4 45875181 45875265 -109754855 - MIRc SINE MIR -66 202 118 7 935 599 262 0 8 chr4 45875589 45875716 -109754404 - ID_B1 SINE B4 0 224 99 7 935 440 277 56 21 chr4 45875716 45875733 -109754387 - B1F1 SINE Alu 0 149 1 7 935 329 182 30 0 chr4 45876200 45876266 -109753854 - MER34 LTR ERV1 0 542 475 8 935 532 244 7 15 chr4 45876320 45876451 -109753669 - MER34 LTR ERV1 -54 488 358 8 935 258 32 0 0 chr4 45876451 45876482 -109753638 + (CACG)n Simple_repeat Simple_repeat 1 31 0 8 935 575 316 32 13 chr4 45876497 45876651 -109753469 - B3A SINE B2 -41 157 1 8 935 207 69 0 0 chr4 45876667 45876696 -109753424 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 8 935 1697 26 0 0 chr4 45876739 45876931 -109753189 - B2_Mm1a SINE B2 -1 192 1 8 935 884 254 59 5 chr4 45876931 45877133 -109752987 - B3 SINE B2 -3 213 1 8 935 1111 68 0 58 chr4 45877147 45877303 -109752817 - B1_Mus2 SINE Alu 0 147 1 8 935 239 245 133 62 chr4 45879743 45879856 -109750264 + MIRm SINE MIR 29 149 -127 8 935 185 226 111 67 chr4 45880084 45880174 -109749946 + L2b LINE L2 3101 3194 -181 8 935 181 296 56 0 chr4 45880176 45880230 -109749890 + MIRm SINE MIR 87 143 -133 8 935 335 277 77 90 chr4 45881228 45881450 -109748670 + MamRep564 Unknown Unknown 116 334 -23 8 935 262 273 13 25 chr4 45881453 45881532 -109748588 + CT-rich Low_complexity Low_complexity 3 80 0 8 935 279 0 0 0 chr4 45881599 45881630 -109748490 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 935 221 226 0 0 chr4 45883243 45883296 -109746824 + C-rich Low_complexity Low_complexity 1 53 0 8 935 280 295 85 92 chr4 45883938 45884091 -109746029 + B4A SINE B4 73 224 -68 8 935 784 165 60 0 chr4 45883961 45884094 -109746026 + B1_Mur2 SINE Alu 9 149 0 8 935 958 144 0 14 chr4 45884251 45884399 -109745721 - B1_Mus1 SINE Alu -1 147 2 8 935 1696 31 0 0 chr4 45884455 45884647 -109745473 + B2_Mm1a SINE B2 2 193 0 8 935 25 0 0 0 chr4 45885002 45885027 -109745093 + GC_rich Low_complexity Low_complexity 1 25 0 8 935 525 300 101 30 chr4 45885044 45885281 -109744839 - MLT1J1 LTR MaLR -165 279 26 8 935 590 286 73 11 chr4 45885309 45885500 -109744620 - B4A SINE B4 0 292 90 8 935 25 83 0 0 chr4 45885529 45885589 -109744531 + AT_rich Low_complexity Low_complexity 1 60 0 8 935 807 246 82 21 chr4 45885613 45885846 -109744274 - B4 SINE B4 -45 247 1 8 935 192 289 0 43 chr4 45885927 45885974 -109744146 - L2a LINE L2 -21 3405 3361 8 935 999 286 60 23 chr4 45886826 45887127 -109742993 - MTE2a LTR MaLR -2 377 66 8 935 1136 238 39 4 chr4 45887127 45887384 -109742736 + ORR1D2 LTR MaLR 1 266 -104 8 935 495 225 35 7 chr4 45887385 45887528 -109742592 - L1M4 LINE L1 -705 5463 5317 8 935 801 258 83 100 chr4 45887677 45887697 -109742423 + B4 SINE B4 7 22 -270 8 935 2380 139 5 60 chr4 45887697 45888096 -109742024 - ORR1C1 LTR MaLR -1 377 1 8 935 801 258 83 100 chr4 45888096 45888364 -109741756 + B4 SINE B4 23 290 -2 8 935 375 60 0 0 chr4 45888386 45888436 -109741684 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 935 203 269 0 0 chr4 45888446 45888498 -109741622 + MIR SINE MIR 94 145 -63 8 935 1317 214 149 0 chr4 45888570 45888892 -109741228 - ORR1D2 LTR MaLR 0 370 1 8 935 1092 112 209 0 chr4 45888903 45889090 -109741030 + URR1A DNA MER1_type 1 226 0 8 935 414 210 107 16 chr4 45889373 45889494 -109740626 - B3 SINE B2 -4 212 81 8 935 345 229 124 0 chr4 45889610 45889715 -109740405 - ID_B1 SINE B4 -2 222 105 8 935 359 266 112 41 chr4 45889735 45889931 -109740189 - L1M4 LINE L1 -1984 4162 3953 8 935 958 303 30 3 chr4 45890079 45890377 -109739743 + MTE2b LTR MaLR 3 308 -71 8 935 276 282 0 23 chr4 45891108 45891195 -109738925 - MIRb SINE MIR -90 178 94 8 935 2425 180 30 3 chr4 45891430 45892224 -109737896 - L1_Mur3 LINE L1 -4256 1624 810 8 935 256 284 186 0 chr4 45892837 45892939 -109737181 - L2b LINE L2 -225 3150 3030 8 935 467 124 58 23 chr4 45894035 45894208 -109735912 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 8 935 276 30 0 0 chr4 45894717 45894750 -109735370 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 8 935 296 111 0 18 chr4 45894890 45894945 -109735175 + (GGA)n Simple_repeat Simple_repeat 2 55 0 8 935 797 249 5 5 chr4 45895883 45896073 -109734047 + B4 SINE B4 2 191 -101 8 935 1568 21 16 0 chr4 45896899 45897089 -109733031 - B2_Mm1a SINE B2 0 193 1 8 935 561 165 34 34 chr4 45897201 45897320 -109732800 + B1_Mur1 SINE Alu 31 149 0 8 935 587 265 63 31 chr4 45898578 45898769 -109731351 + B3A SINE B2 1 197 -1 8 935 420 318 55 101 chr4 45899555 45899922 -109730198 + ORR1E LTR MaLR 4 353 -6 8 935 384 22 0 0 chr4 45899951 45899996 -109730124 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 935 445 230 179 25 chr4 45900076 45900272 -109729848 + L1M5 LINE L1 5403 5628 -545 8 935 652 207 136 55 chr4 45900787 45901007 -109729113 - MTD LTR MaLR -181 238 1 8 935 345 262 0 0 chr4 45901033 45901113 -109729007 - Lx8 LINE L1 -142 7331 7252 8 935 379 303 48 14 chr4 45901111 45901300 -109728820 + L1_Rod LINE L1 4206 4415 -1465 8 935 180 0 0 0 chr4 45901300 45901320 -109728800 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 935 356 309 73 39 chr4 45901320 45901389 -109728731 + L1_Rod LINE L1 4416 4478 -1402 8 935 1096 282 60 8 chr4 45901378 45901746 -109728374 - L1M2 LINE L1 -2198 3945 3559 8 935 230 235 0 0 chr4 45901747 45901798 -109728322 + CT-rich Low_complexity Low_complexity 2 52 0 8 935 1073 82 0 20 chr4 45901798 45901948 -109728172 - B1_Mus2 SINE Alu 0 147 1 8 935 189 0 0 0 chr4 45902218 45902239 -109727881 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 935 843 168 0 0 chr4 45902571 45902714 -109727406 - URR1B DNA MER1_type 0 225 83 8 935 210 227 0 0 chr4 45903538 45903582 -109726538 + C-rich Low_complexity Low_complexity 3 46 0 8 935 315 169 38 25 chr4 45903944 45904023 -109726097 - Lx7 LINE L1 0 7696 7617 8 935 1240 77 22 5 chr4 45904210 45904394 -109725726 - B2_Mm2 SINE B2 0 195 9 8 935 467 184 95 19 chr4 45904452 45904557 -109725563 + PB1D9 SINE Alu 2 114 -6 8 935 1179 97 0 0 chr4 45904567 45904796 -109725324 + (TGG)n Simple_repeat Simple_repeat 1 229 0 8 935 24 67 0 0 chr4 45905363 45905408 -109724712 + AT_rich Low_complexity Low_complexity 1 45 0 8 935 429 20 0 0 chr4 45905434 45905484 -109724636 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 935 276 290 72 41 chr4 45905521 45905618 -109724502 - B3A SINE B2 -97 101 2 8 935 188 111 28 0 chr4 45905776 45905812 -109724308 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 8 935 1446 140 0 0 chr4 45906674 45906895 -109723225 - URR1B DNA MER1_type 0 225 5 8 935 1024 217 32 65 chr4 45906979 45907289 -109722831 - L1_Mur3 LINE L1 -2340 3540 3241 8 935 582 226 144 169 chr4 45907942 45908204 -109721916 - ORR1C1 LTR MaLR -66 312 84 8 935 2039 123 26 109 chr4 45908204 45908634 -109721486 - ORR1B1 LTR MaLR 0 394 1 8 935 582 226 144 169 chr4 45908634 45908691 -109721429 - ORR1C1 LTR MaLR -295 83 1 8 935 772 231 147 97 chr4 45909666 45910007 -109720113 - RMER20B LTR ERVK -36 591 234 8 935 207 220 0 0 chr4 45910404 45910454 -109719666 + T-rich Low_complexity Low_complexity 1 50 0 8 935 593 206 50 22 chr4 45910487 45910626 -109719494 - B1_Mur2 SINE Alu -6 143 1 8 935 354 223 71 47 chr4 45910686 45910813 -109719307 + Tigger5 DNA MER2_type 2133 2262 -144 8 935 247 277 48 0 chr4 45910974 45911058 -109719062 - B1F1 SINE Alu -1 116 28 8 935 351 129 0 31 chr4 45911865 45911929 -109718191 - ORR1D2 LTR MaLR -308 62 1 8 935 486 291 59 44 chr4 45911957 45912230 -109717890 - RMER10A LTR ERVL -2 440 164 8 935 670 213 4 4 chr4 45912230 45912469 -109717651 + G-rich Low_complexity Low_complexity 1 239 0 8 935 295 312 21 21 chr4 45912482 45912577 -109717543 - RMER10A LTR ERVL -336 106 12 8 935 672 231 8 0 chr4 45914003 45914133 -109715987 - B3A SINE B2 -67 131 1 8 935 21 0 0 0 chr4 45914133 45914154 -109715966 + AT_rich Low_complexity Low_complexity 1 21 0 8 935 363 44 0 0 chr4 45914753 45914798 -109715322 + (GCATG)n Simple_repeat Simple_repeat 1 45 0 8 935 1128 61 0 26 chr4 45915593 45915745 -109714375 + B1_Mus1 SINE Alu 1 148 0 8 935 255 299 171 11 chr4 45916341 45916514 -109713606 - MIRb SINE MIR -17 251 60 8 935 22 0 0 0 chr4 45916859 45916881 -109713239 + GC_rich Low_complexity Low_complexity 1 22 0 8 935 182 330 143 0 chr4 45917754 45917866 -109712254 + MIRc SINE MIR 24 151 -117 8 935 639 316 53 50 chr4 45918253 45918590 -109711530 - ORR1E LTR MaLR -17 342 5 8 935 598 309 104 41 chr4 45920117 45920434 -109709686 - MER58B DNA MER1_type -3 338 2 8 935 212 311 26 39 chr4 45920479 45920556 -109709564 - ID4_ SINE ID -6 77 2 8 935 316 243 0 13 chr4 45920583 45920658 -109709462 - B3 SINE B2 0 216 143 8 935 3939 176 27 52 chr4 45920660 45921511 -109708609 - RMER13B LTR ERVK -78 830 1 8 935 1696 222 42 15 chr4 45921582 45921988 -109708132 - MTD LTR MaLR 0 419 3 8 935 317 148 16 16 chr4 45922433 45922495 -109707625 + L1MD LINE L1 4970 5031 -1115 8 935 399 56 0 0 chr4 45922634 45922688 -109707432 + (ACTG)n Simple_repeat Simple_repeat 4 57 0 8 935 429 256 57 8 chr4 45922726 45922848 -109707272 + RSINE1 SINE B4 3 130 -35 8 935 333 0 0 0 chr4 45922858 45922895 -109707225 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 935 195 42 0 0 chr4 45923153 45923177 -109706943 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 935 1047 80 0 0 chr4 45923177 45923314 -109706806 - B1_Mus1 SINE Alu -11 137 1 8 935 312 27 0 0 chr4 45924765 45924802 -109705318 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 935 240 291 88 12 chr4 45925229 45925309 -109704811 + B4 SINE B4 1 86 -206 8 935 704 22 0 22 chr4 45925516 45925607 -109704513 + (TCCC)n Simple_repeat Simple_repeat 1 89 0 9 935 543 315 75 82 chr4 45925940 45926039 -109704081 + B4 SINE B4 1 101 -191 9 935 2334 77 3 58 chr4 45926039 45926385 -109703735 - ORR1A2 LTR MaLR 0 327 1 9 935 543 315 75 82 chr4 45926385 45926579 -109703541 + B4 SINE B4 102 292 0 9 935 200 240 0 20 chr4 45927264 45927315 -109702805 + A-rich Low_complexity Low_complexity 5 54 0 9 935 477 253 0 0 chr4 45927548 45927694 -109702426 + GA-rich Low_complexity Low_complexity 2 147 0 9 935 977 209 120 136 chr4 45928146 45928529 -109701591 + MTE2a LTR MaLR 3 379 0 9 935 850 208 69 0 chr4 45929524 45929726 -109700394 - B3 SINE B2 0 216 1 9 935 23 0 0 0 chr4 45929730 45929753 -109700367 + AT_rich Low_complexity Low_complexity 1 23 0 9 935 311 0 26 0 chr4 45929812 45929851 -109700269 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 9 935 289 220 0 0 chr4 45930025 45930084 -109700036 + L1MC LINE L1 5677 5735 -2147 9 935 4210 29 18 0 chr4 45930459 45930969 -109699151 - MURVY-LTR LTR ERV1 0 519 1 9 935 374 293 8 41 chr4 45931167 45931288 -109698832 - B1F SINE Alu -5 144 28 9 935 493 278 43 102 chr4 45931555 45931956 -109698164 - RMER20B LTR ERVK -119 508 95 9 935 22 0 0 0 chr4 45932661 45932683 -109697437 + AT_rich Low_complexity Low_complexity 1 22 0 9 935 676 289 66 4 chr4 45932881 45933138 -109696982 - L1MA4 LINE L1 -364 5936 5664 9 935 549 230 36 7 chr4 45934489 45934629 -109695491 - B1F1 SINE Alu -5 144 1 9 935 387 0 0 0 chr4 45935203 45935246 -109694874 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 935 231 276 46 28 chr4 45935286 45935394 -109694726 - L1MEd LINE L1 -5447 672 563 9 935 279 114 0 0 chr4 45935697 45935741 -109694379 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 9 935 375 222 0 12 chr4 45935741 45935817 -109694303 - ID4_ SINE ID -7 76 1 9 935 339 198 57 23 chr4 45936726 45936814 -109693306 + B4 SINE B4 3 93 -199 9 935 2206 88 12 56 chr4 45938481 45938819 -109691301 - ORR1A2 LTR MaLR 0 327 5 9 935 393 117 0 0 chr4 45939820 45939880 -109690240 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 935 226 274 13 27 chr4 45940504 45940579 -109689541 - MIRc SINE MIR -99 169 96 9 935 216 0 0 0 chr4 45942049 45942073 -109688047 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 935 264 305 41 25 chr4 45942080 45942201 -109687919 + L2b LINE L2 3233 3355 -20 9 935 517 312 196 47 chr4 45943652 45944137 -109685983 - MER89 LTR ERV1 -2 557 1 9 935 5645 37 0 0 chr4 45944276 45944959 -109685161 - MT-int LTR MaLR -73 1025 343 9 935 602 204 143 13 chr4 45945553 45945640 -109684480 - RLTR20C LTR ERVK 0 551 459 9 935 441 0 0 0 chr4 45945640 45945689 -109684431 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 935 1083 219 57 96 chr4 45945689 45946069 -109684051 - RLTR20C LTR ERVK -93 458 1 9 935 251 289 114 44 chr4 45946726 45946954 -109683166 - L1MD2 LINE L1 -224 6135 5892 9 935 238 308 31 0 chr4 45947072 45947137 -109682983 - MLT1A0 LTR MaLR -51 314 248 9 935 334 279 123 19 chr4 45947140 45947246 -109682874 + PB1D10 SINE Alu 1 117 0 9 935 976 150 104 31 chr4 45947436 45947629 -109682491 - B3 SINE B2 0 216 10 9 935 204 67 0 0 chr4 45948856 45948886 -109681234 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 9 935 677 164 214 0 chr4 45949550 45949709 -109680411 - MTC LTR MaLR 0 419 227 9 935 210 271 0 0 chr4 45949742 45949790 -109680330 + ID4 SINE ID 8 55 -28 9 935 228 35 0 0 chr4 45949865 45949894 -109680226 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 9 935 891 99 5 0 chr4 45949897 45950047 -109680073 - MTC LTR MaLR -191 228 76 9 935 310 330 59 0 chr4 45950019 45950137 -109679983 + B3 SINE B2 90 214 -2 9 935 505 224 0 36 chr4 45950391 45950502 -109679618 - MTC LTR MaLR -314 107 1 9 935 8194 28 0 4 chr4 45950547 45950560 -109679560 - L1Md_F2 LINE L1 -5 6577 6568 9 935 191 36 36 0 chr4 45950560 45950588 -109679532 + (TTA)n Simple_repeat Simple_repeat 2 30 0 9 935 8194 36 0 2 chr4 45950588 45952182 -109677938 - L1Md_F2 LINE L1 -15 6567 4973 9 935 264 312 0 61 chr4 45952206 45952247 -109677873 - RSINE1 SINE B4 -4 161 125 9 935 357 24 0 0 chr4 45952247 45952289 -109677831 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 935 264 312 0 61 chr4 45952289 45952329 -109677791 - RSINE1 SINE B4 -41 124 85 9 935 252 257 56 96 chr4 45952395 45952520 -109677600 - B4A SINE B4 -169 123 4 9 935 480 35 0 0 chr4 45952539 45952597 -109677523 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 935 534 254 47 46 chr4 45952603 45952774 -109677346 - ID_B1 SINE B4 -69 223 61 9 935 2296 64 19 22 chr4 45952823 45953141 -109676979 - ORR1A3 LTR MaLR 0 326 10 9 935 413 318 403 32 chr4 45953164 45953471 -109676649 - MER57E1 LTR ERV1 -13 423 3 9 935 249 108 0 0 chr4 45954025 45954062 -109676058 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9 935 1275 47 0 0 chr4 45954062 45954210 -109675910 - B1_Mus1 SINE Alu 0 148 1 9 935 1144 67 0 32 chr4 45954972 45955157 -109674963 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 935 212 184 20 0 chr4 45955157 45955206 -109674914 + GA-rich Low_complexity Low_complexity 4 53 0 9 935 337 288 51 36 chr4 45955207 45955344 -109674776 + L1M5 LINE L1 3073 3211 -2935 9 935 439 304 0 0 chr4 45955674 45955786 -109674334 + MIRb SINE MIR 34 145 -123 9 935 359 250 102 0 chr4 45956462 45956550 -109673570 + PB1D10 SINE Alu 1 97 -20 9 935 540 328 125 25 chr4 45956628 45957053 -109673067 + L1MEg LINE L1 797 1282 -4943 9 935 741 145 105 15 chr4 45958039 45958172 -109671948 - B1_Mur2 SINE Alu -3 146 2 9 935 859 171 10 0 chr4 45958291 45958589 -109671531 + (TG)n Simple_repeat Simple_repeat 1 301 0 9 935 860 278 79 15 chr4 45958614 45958881 -109671239 - B4 SINE B4 -8 284 1 9 935 2100 122 11 83 chr4 45960786 45961222 -109668898 + RMER17C LTR ERVK 6 410 0 9 935 243 0 0 0 chr4 45962213 45962240 -109667880 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 935 744 189 56 0 chr4 45963967 45964110 -109666010 + B3A SINE B2 1 151 -47 9 935 324 0 0 0 chr4 45964113 45964149 -109665971 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 935 710 268 72 0 chr4 45964535 45964688 -109665432 + RSINE1 SINE B4 2 165 0 9 935 246 128 0 0 chr4 45964692 45964731 -109665389 + (CATA)n Simple_repeat Simple_repeat 4 42 0 9 935 2406 215 59 49 chr4 45964880 45965002 -109665118 - RMER13B LTR ERVK -4 904 763 9 935 192 40 0 0 chr4 45965002 45965027 -109665093 + (CG)n Simple_repeat Simple_repeat 2 26 0 9 935 423 0 0 0 chr4 45965027 45965073 -109665047 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 935 2406 245 64 88 chr4 45965073 45965993 -109664127 - RMER13B LTR ERVK -146 762 1 9 935 811 314 36 23 chr4 45966685 45966994 -109663126 - MLT1A0 LTR MaLR -49 316 4 9 935 296 257 0 39 chr4 45967329 45967406 -109662714 + MLT1F2 LTR MaLR 426 499 -61 9 935 203 0 37 0 chr4 45968602 45968629 -109661491 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 9 935 1055 92 42 0 chr4 45968634 45968776 -109661344 - B1_Mus1 SINE Alu 0 148 1 9 935 211 180 183 43 chr4 45968918 45969011 -109661109 + MIRb SINE MIR 34 139 -129 9 935 260 291 0 0 chr4 45969353 45969408 -109660712 - MLT1K LTR MaLR -499 96 42 9 935 2101 118 32 0 chr4 45969589 45969900 -109660220 - ORR1C1 LTR MaLR -8 370 50 9 935 2088 227 46 54 chr4 45969900 45970126 -109659994 - RMER19C LTR ERVK 0 611 388 9 935 2978 75 27 15 chr4 45970126 45970530 -109659590 + RLTR9E LTR ERVK 1 409 0 9 935 2088 227 46 54 chr4 45970530 45970842 -109659278 - RMER19C LTR ERVK -224 387 77 9 935 357 143 79 0 chr4 45970823 45970886 -109659234 - ORR1C1 LTR MaLR -316 68 1 9 935 620 253 80 65 chr4 45971426 45971625 -109658495 + MTD LTR MaLR 218 419 0 9 935 616 280 89 12 chr4 45971625 45971871 -109658249 - L1MC LINE L1 -728 5616 5352 9 935 659 249 64 19 chr4 45971857 45972125 -109657995 - L1M4c LINE L1 -4956 2052 1731 9 935 976 224 5 50 chr4 45972172 45972372 -109657748 - ORR1D1 LTR MaLR 0 374 183 9 935 1098 100 0 0 chr4 45972372 45972552 -109657568 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 935 976 224 5 50 chr4 45972552 45972572 -109657548 - ORR1D1 LTR MaLR -192 182 164 9 935 354 173 0 0 chr4 45972572 45972676 -109657444 + GA-rich Low_complexity Low_complexity 1 104 0 9 935 789 202 42 104 chr4 45972676 45972869 -109657251 - ORR1D1 LTR MaLR -193 181 1 9 935 366 215 8 15 chr4 45972926 45973058 -109657062 + CT-rich Low_complexity Low_complexity 2 132 0 9 935 754 274 83 24 chr4 45973079 45973333 -109656787 - Lx8 LINE L1 -326 7147 6879 9 935 341 309 47 28 chr4 45973336 45973549 -109656571 - L1M4c LINE L1 -5100 1804 1588 9 935 329 0 0 24 chr4 45973607 45973649 -109656471 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 9 935 966 222 11 0 chr4 45974190 45974370 -109655750 - B3A SINE B2 -16 182 1 9 935 455 232 48 25 chr4 45974395 45974569 -109655551 - L1MB7 LINE L1 -359 5825 5646 9 935 261 98 0 0 chr4 45975445 45975486 -109654634 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 9 935 243 0 0 0 chr4 45975491 45975518 -109654602 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 935 297 0 0 0 chr4 45975518 45975550 -109654570 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 935 530 296 32 0 chr4 45975601 45975726 -109654394 + RSINE1 SINE B4 35 163 -2 9 935 656 230 111 0 chr4 45975759 45975885 -109654235 - B1_Mur3 SINE Alu -9 140 1 9 935 728 233 0 8 chr4 45975924 45976058 -109654062 + B1_Mur1 SINE Alu 15 147 -2 9 935 186 191 0 0 chr4 45976071 45976118 -109654002 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 935 486 0 0 0 chr4 45976119 45976173 -109653947 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 935 231 250 121 36 chr4 45976176 45976259 -109653861 - RMER20B LTR ERVK -34 593 504 9 935 634 261 101 36 chr4 45976267 45976621 -109653499 - RMER20B LTR ERVK -84 543 164 9 935 189 121 0 0 chr4 45976639 45976672 -109653448 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 935 1391 221 8 88 chr4 45978048 45978411 -109651709 + MLT1A0 LTR MaLR 17 350 -15 9 935 213 231 58 0 chr4 45978649 45978701 -109651419 - L2c LINE L2 0 3387 3333 1 935 216 0 0 0 chr4 45979356 45979380 -109650740 + (A)n Simple_repeat Simple_repeat 1 24 0 1 935 298 299 154 86 chr4 45979419 45979639 -109650481 - MER20B DNA MER1_type -547 236 2 1 935 1200 147 36 27 chr4 45980210 45980434 -109649686 + URR1A DNA MER1_type 1 226 0 1 935 230 0 0 32 chr4 45981631 45981662 -109648458 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 935 833 209 0 7 chr4 45981662 45981802 -109648318 - B1_Mur2 SINE Alu -10 139 1 1 935 321 187 286 0 chr4 45982304 45982395 -109647725 + PB1D10 SINE Alu 1 117 0 1 935 308 274 84 0 chr4 45982533 45982628 -109647492 + L1ME1 LINE L1 5344 5446 -732 1 935 230 222 0 58 chr4 45982798 45982884 -109647236 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 1 935 856 310 70 7 chr4 45983007 45983433 -109646687 + L1ME1 LINE L1 5727 6179 0 1 935 414 321 7 7 chr4 45984063 45984204 -109645916 - L1M5 LINE L1 -409 5770 5630 1 935 473 299 78 46 chr4 45984222 45984569 -109645551 + L1ME1 LINE L1 5822 6179 0 1 935 189 294 0 0 chr4 45984733 45984784 -109645336 - L2a LINE L2 -8 3418 3368 1 935 249 253 20 40 chr4 45985299 45985398 -109644722 + (CGGGG)n Simple_repeat Simple_repeat 4 100 0 1 935 205 86 0 28 chr4 45986977 45987013 -109643107 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 935 1725 151 131 214 chr4 45987269 45987866 -109642254 + RMER4B LTR ERVK 39 585 0 1 935 187 312 49 24 chr4 45987915 45987997 -109642123 - MIRb SINE MIR -156 112 29 1 935 282 160 0 20 chr4 45988204 45988255 -109641865 + PB1D9 SINE Alu 7 56 -64 1 935 295 274 68 68 chr4 45988321 45988454 -109641666 + MIR3 SINE MIR 76 208 0 1 935 622 144 133 23 chr4 45988521 45988649 -109641471 - URR1A DNA MER1_type 0 226 85 1 935 313 306 9 26 chr4 45988994 45989108 -109641012 + PB1D10 SINE Alu 4 115 -2 1 935 206 279 160 36 chr4 45989469 45989590 -109640530 + MIR SINE MIR 3 138 -130 1 935 959 239 33 9 chr4 45989616 45989827 -109640293 - B3 SINE B2 0 216 1 1 935 976 262 57 4 chr4 45989905 45990169 -109639951 - B4A SINE B4 -14 278 1 1 935 2701 151 111 13 chr4 45990220 45990742 -109639378 - RMER15 LTR ERVL 0 575 3 1 935 1778 176 135 0 chr4 45991081 45991428 -109638692 + RMER19B LTR ERVK 1 394 -508 1 935 192 40 0 0 chr4 45991822 45991847 -109638273 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 935 288 341 168 23 chr4 45992702 45993199 -109636921 - L2a LINE L2 -2 3373 2810 1 935 647 68 5 116 chr4 45993714 45993913 -109636207 + CT-rich Low_complexity Low_complexity 4 180 0 1 935 224 270 13 13 chr4 45994276 45994351 -109635769 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 935 302 231 97 21 chr4 45994357 45994413 -109635707 - B4A SINE B4 -2 290 229 1 935 287 49 24 0 chr4 45994413 45994454 -109635666 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 935 302 309 173 36 chr4 45994454 45994608 -109635512 - B4A SINE B4 -64 228 39 1 935 1726 45 316 4 chr4 45994608 45994852 -109635268 - ORR1A3 LTR MaLR -3 323 4 1 935 280 333 196 40 chr4 45994852 45994890 -109635230 - B4 SINE B4 -254 38 3 1 935 501 323 111 33 chr4 45994937 45995180 -109634940 - B4 SINE B4 -4 288 27 1 935 508 304 106 108 chr4 45995317 45995450 -109634670 - L1MC LINE L1 -769 5377 5229 1 935 1212 57 0 0 chr4 45995450 45995591 -109634529 - B1_Mus2 SINE Alu -6 141 1 1 935 767 212 0 20 chr4 45995591 45995739 -109634381 - B1_Mur2 SINE Alu -3 146 1 1 935 508 304 106 108 chr4 45995739 45996105 -109634015 - L1MC LINE L1 -918 5228 4879 1 935 417 277 67 0 chr4 45996325 45996443 -109633677 - MER3 DNA MER1_type -54 155 30 1 935 517 293 21 21 chr4 45996443 45996586 -109633534 + B1F SINE Alu 1 143 -6 1 935 4265 113 32 11 chr4 45996616 45997242 -109632878 - Lx3C LINE L1 -9 6967 6329 1 935 2821 198 95 12 chr4 45997251 45997819 -109632301 - RMER12B LTR ERVK -789 615 1 1 935 2989 231 54 34 chr4 45997895 45998974 -109631146 - Lx9 LINE L1 -1544 6100 4953 1 935 216 97 0 0 chr4 45998983 45999014 -109631106 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1 935 1244 45 6 13 chr4 45999014 45999166 -109630954 - B2_Mm2 SINE B2 -42 153 1 1 935 715 197 7 13 chr4 45999167 45999321 -109630799 - Lx9 LINE L1 -946 4901 4749 1 935 478 259 201 21 chr4 46003646 46003835 -109626285 + MER58A DNA MER1_type 2 224 0 1 935 189 175 0 0 chr4 46004470 46004510 -109625610 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 935 829 216 110 30 chr4 46005539 46005739 -109624381 + B3 SINE B2 1 216 0 3 936 1184 82 0 0 chr4 46008074 46008221 -109621899 + B1_Mus2 SINE Alu 1 147 0 4 936 497 234 0 7 chr4 46010005 46010112 -109620008 - B1F SINE Alu 0 120 17 5 936 305 258 67 0 chr4 46010367 46010388 -109619732 - L2a LINE L2 -10 3416 3392 6 936 1260 81 17 17 chr4 46010388 46010564 -109619556 + B2_Mm2 SINE B2 2 177 -18 7 936 305 258 67 0 chr4 46010564 46010631 -109619489 - L2a LINE L2 -35 3391 3323 6 936 404 290 56 42 chr4 46011864 46012008 -109618112 + MIRb SINE MIR 75 220 -48 8 936 21 36 0 0 chr4 46014268 46014296 -109615824 + AT_rich Low_complexity Low_complexity 1 28 0 9 936 1312 141 23 0 chr4 46014352 46014572 -109615548 + URR1B DNA MER1_type 1 225 0 1 936 414 279 106 8 chr4 46015089 46015212 -109614908 + ID_B1 SINE B4 82 216 -8 1 936 358 242 137 0 chr4 46015855 46015950 -109614170 + PB1D10 SINE Alu 1 108 -9 1 936 604 273 21 14 chr4 46016321 46016462 -109613658 - ID_B1 SINE B4 -1 223 82 1 936 755 130 114 0 chr4 46016687 46016810 -109613310 + B1_Mur2 SINE Alu 7 143 -6 1 936 388 311 10 0 chr4 46016801 46016904 -109613216 + ID_B1 SINE B4 118 221 -3 1 936 460 220 9 35 chr4 46021625 46021738 -109608382 + PB1D10 SINE Alu 1 110 -7 1 936 407 240 0 13 chr4 46021744 46021820 -109608300 + ID4 SINE ID 9 83 0 1 936 360 183 195 0 chr4 46022507 46022589 -109607531 + B1F2 SINE Alu 37 134 -15 1 936 772 311 92 48 chr4 46022663 46023038 -109607082 - MTE2a LTR MaLR 0 379 18 1 936 219 36 0 0 chr4 46023879 46023907 -109606213 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 936 464 266 26 0 chr4 46023909 46024022 -109606098 - PB1D10 SINE Alu -1 116 1 2 936 232 288 30 0 chr4 46023965 46024031 -109606089 - B4A SINE B4 -148 144 77 2 936 712 260 39 6 chr4 46024494 46024505 -109605615 - B3A SINE B2 -9 189 178 2 936 207 0 0 0 chr4 46024505 46024528 -109605592 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 936 712 260 39 6 chr4 46024528 46024698 -109605422 - B3A SINE B2 -21 177 2 2 936 446 266 84 23 chr4 46024743 46024874 -109605246 + B1F SINE Alu 1 139 -10 2 936 210 167 24 0 chr4 46024882 46024924 -109605196 + G-rich Low_complexity Low_complexity 5 47 0 2 936 303 49 0 0 chr4 46024924 46024965 -109605155 + (CAGAGA)n Simple_repeat Simple_repeat 3 43 0 2 936 360 0 0 0 chr4 46026144 46026184 -109603936 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 936 2220 219 8 97 chr4 46026189 46026724 -109603396 - RLTR18B LTR ERVK -25 487 1 2 936 578 316 26 81 chr4 46026738 46027045 -109603075 + B4A SINE B4 1 290 -2 3 936 261 0 0 0 chr4 46027289 46027318 -109602802 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 936 4953 21 0 2 chr4 46027320 46027882 -109602238 - L1Md_A LINE L1 0 6582 6022 3 936 3798 195 50 32 chr4 46028305 46029234 -109600886 + RMER1B Other Other 173 1061 -5 3 936 471 219 0 16 chr4 46029372 46029493 -109600627 - L1_Mur3 LINE L1 -1606 4274 4156 3 936 570 215 123 14 chr4 46029515 46029661 -109600459 - MTEb LTR MaLR -217 162 1 3 936 193 326 0 39 chr4 46030079 46030130 -109599990 + L2a LINE L2 3357 3405 -21 3 936 251 114 0 22 chr4 46030692 46030737 -109599383 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 936 729 268 103 28 chr4 46031783 46032036 -109598084 + B4A SINE B4 2 273 -19 3 936 621 100 0 0 chr4 46032036 46032126 -109597994 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 936 412 310 232 28 chr4 46032739 46033097 -109597023 - L1MC4a LINE L1 -9 7873 7443 4 936 558 203 0 0 chr4 46034307 46034430 -109595690 + (TA)n Simple_repeat Simple_repeat 1 123 0 4 936 729 244 0 0 chr4 46034585 46034720 -109595400 + ID_B1 SINE B4 83 217 -7 4 936 194 311 104 28 chr4 46035921 46036027 -109594093 + MIRb SINE MIR 37 150 -118 4 936 427 273 0 0 chr4 46037535 46037634 -109592486 - PB1D7 SINE Alu 0 120 22 4 936 1301 34 0 0 chr4 46039230 46039377 -109590743 + B1_Mm SINE Alu 1 147 0 4 936 23 68 0 0 chr4 46040535 46040579 -109589541 + AT_rich Low_complexity Low_complexity 1 44 0 4 936 216 307 96 41 chr4 46040685 46040831 -109589289 + MER5A DNA MER1_type 5 158 -31 4 936 1320 75 0 0 chr4 46042070 46042438 -109587682 + (TG)n Simple_repeat Simple_repeat 1 368 0 4 936 423 56 0 0 chr4 46043986 46044040 -109586080 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 936 827 230 119 36 chr4 46044040 46044437 -109585683 - L1MCa LINE L1 -3102 3219 2803 5 936 240 35 0 0 chr4 46044451 46044480 -109585640 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 936 251 333 0 10 chr4 46044505 46044602 -109585518 - B4A SINE B4 -6 286 191 5 936 770 238 64 43 chr4 46044594 46044827 -109585293 - B4A SINE B4 -2 290 53 5 936 266 196 0 35 chr4 46045087 46045145 -109584975 + B4A SINE B4 90 145 -147 5 936 520 198 5 7 chr4 46045098 46045194 -109584926 + PB1D10 SINE Alu 14 97 -20 5 936 344 236 179 46 chr4 46045234 46045385 -109584735 - L1MCa LINE L1 -4707 1801 1631 5 936 192 77 0 0 chr4 46045534 46045560 -109584560 + (CAGTG)n Simple_repeat Simple_repeat 5 30 0 5 936 414 0 0 0 chr4 46045676 46045722 -109584398 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 936 498 330 74 39 chr4 46045761 46046045 -109584075 - L1MCa LINE L1 -5233 1275 982 5 936 894 246 113 35 chr4 46046124 46046494 -109583626 - L1MCa LINE L1 -5535 973 575 5 936 1392 80 16 11 chr4 46046598 46046788 -109583332 + B2_Mm2 SINE B2 1 191 -4 5 936 21 36 0 0 chr4 46047589 46047617 -109582503 + AT_rich Low_complexity Low_complexity 1 28 0 5 936 875 218 194 0 chr4 46047720 46047936 -109582184 - MTD LTR MaLR -145 274 17 6 936 180 0 0 0 chr4 46048179 46048199 -109581921 + (A)n Simple_repeat Simple_repeat 1 20 0 6 936 358 88 255 46 chr4 46048577 46048666 -109581454 - PB1D10 SINE Alu -31 118 18 6 936 200 299 87 40 chr4 46049261 46049411 -109580709 - L2 LINE L2 -932 2487 2331 6 936 1210 55 0 7 chr4 46049508 46049656 -109580464 + B1_Mus2 SINE Alu 1 147 0 6 936 22 56 0 0 chr4 46049801 46049837 -109580283 + AT_rich Low_complexity Low_complexity 1 36 0 6 936 2480 78 6 3 chr4 46049886 46050222 -109579898 - L1_Mus1 LINE L1 -1 6566 6230 6 936 305 231 60 32 chr4 46050647 46050803 -109579317 + L1M LINE L1 5318 5474 -710 6 936 233 300 65 22 chr4 46053813 46053905 -109576215 + MIR3 SINE MIR 13 108 -100 6 936 184 308 15 15 chr4 46054249 46054315 -109575805 + MIR SINE MIR 118 183 -79 6 936 183 250 111 0 chr4 46056058 46056130 -109573990 + L2b LINE L2 3018 3097 -329 6 936 202 356 50 0 chr4 46056340 46056441 -109573679 + L2b LINE L2 3233 3338 -37 6 936 202 360 13 0 chr4 46056454 46056529 -109573591 - MIRc SINE MIR -55 213 138 7 936 1154 36 0 0 chr4 46056895 46057033 -109573087 - B1_Mus2 SINE Alu -8 139 2 7 936 306 321 0 52 chr4 46057484 46057599 -109572521 - Charlie4z DNA MER1_type -34 133 25 7 936 520 287 15 0 chr4 46057881 46058017 -109572103 + MIR SINE MIR 7 144 -118 7 936 889 129 0 0 chr4 46058063 46058202 -109571918 + B1_Mus2 SINE Alu 9 147 0 7 936 223 260 0 0 chr4 46058205 46058255 -109571865 + GA-rich Low_complexity Low_complexity 2 51 0 7 936 479 235 42 8 chr4 46058436 46058556 -109571564 + MLT1C LTR MaLR 53 176 -291 7 936 344 232 0 0 chr4 46058708 46058777 -109571343 + MIR SINE MIR 97 165 -97 7 936 419 321 0 78 chr4 46058865 46059044 -109571076 + ID_B1 SINE B4 21 185 -39 7 936 391 201 188 34 chr4 46059060 46059192 -109570928 + B3 SINE B2 1 155 -61 7 936 321 26 0 0 chr4 46059192 46059230 -109570890 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 936 391 201 188 34 chr4 46059230 46059246 -109570874 + B3 SINE B2 156 172 -44 7 936 197 83 28 0 chr4 46059247 46059283 -109570837 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 936 516 156 0 0 chr4 46059291 46059381 -109570739 + CT-rich Low_complexity Low_complexity 3 92 0 8 936 725 204 84 21 chr4 46060124 46060314 -109569806 - ID_B1 SINE B4 -15 209 8 8 936 315 0 0 0 chr4 46060586 46060621 -109569499 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 936 255 297 0 0 chr4 46060705 46060796 -109569324 + (TG)n Simple_repeat Simple_repeat 2 92 0 8 936 393 127 0 0 chr4 46060798 46060877 -109569243 + (TC)n Simple_repeat Simple_repeat 1 79 0 8 936 429 20 0 0 chr4 46060877 46060927 -109569193 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 936 543 78 0 0 chr4 46061672 46061749 -109568371 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 936 293 282 38 25 chr4 46061751 46061831 -109568289 - B3A SINE B2 -65 133 53 8 936 350 274 32 8 chr4 46061888 46062013 -109568107 + L1ME3 LINE L1 5451 5578 -586 9 936 336 381 43 18 chr4 46062105 46062268 -109567852 + L1ME3 LINE L1 5723 5889 -273 9 936 927 253 68 0 chr4 46062272 46062537 -109567583 + B4 SINE B4 1 283 -9 9 936 260 308 71 52 chr4 46062574 46062728 -109567392 + L1ME3 LINE L1 5877 6033 -129 9 936 192 340 45 45 chr4 46063442 46063553 -109566567 - MIRc SINE MIR -149 119 9 9 936 314 319 8 42 chr4 46063677 46063774 -109566346 + MER45R DNA Tip100 30 127 -1454 9 936 462 79 0 0 chr4 46063774 46063837 -109566283 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 936 314 319 8 42 chr4 46063837 46063857 -109566263 + MER45R DNA Tip100 128 143 -1438 9 936 926 281 54 7 chr4 46063846 46064122 -109565998 - B4 SINE B4 -2 290 2 9 936 660 271 29 19 chr4 46064700 46064753 -109565367 - B3 SINE B2 -6 210 154 9 936 308 111 19 0 chr4 46064753 46064807 -109565313 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 936 728 224 7 7 chr4 46064807 46064960 -109565160 - B3A SINE B2 -44 154 2 9 936 1632 146 159 26 chr4 46065028 46065367 -109564753 - ORR1C2 LTR MaLR 0 384 1 9 936 1116 225 131 36 chr4 46065374 46065710 -109564410 - MTEa LTR MaLR -9 370 3 9 936 403 322 27 55 chr4 46066590 46066846 -109563274 + L1MB3 LINE L1 5886 6134 -49 1 936 216 0 0 0 chr4 46068828 46068852 -109561268 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 936 306 290 18 36 chr4 46069706 46069817 -109560303 - MLT1C LTR MaLR 0 408 300 1 936 2074 172 38 13 chr4 46069954 46070349 -109559771 + MTD LTR MaLR 5 409 -10 1 936 1153 42 14 0 chr4 46070504 46070647 -109559473 - B1_Mm SINE Alu -1 146 2 1 936 237 324 40 23 chr4 46070652 46070829 -109559291 - RMER1C Other Other -2 1340 1161 1 936 531 227 146 28 chr4 46070670 46070883 -109559237 - Lx8 LINE L1 -1 7472 7235 1 936 453 36 0 0 chr4 46071588 46071643 -109558477 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 936 279 226 106 62 chr4 46071742 46071855 -109558265 - MT2B2 LTR ERVL -292 292 175 1 936 439 158 24 0 chr4 46071774 46071856 -109558264 - B1_Mur4 SINE Alu -56 94 11 1 936 550 290 89 68 chr4 46071868 46072149 -109557971 - MLT1C LTR MaLR -119 348 62 1 936 397 298 172 20 chr4 46073428 46073678 -109556442 + B4A SINE B4 5 292 0 1 936 1379 269 63 65 chr4 46074202 46074759 -109555361 - MLT2B4 LTR ERVL 0 556 1 1 936 762 302 159 18 chr4 46074759 46075211 -109554909 - ERVL-B4-int LTR ERVL 0 5714 5199 1 936 656 54 0 138 chr4 46075238 46075368 -109554752 - RLTRETN_Mm LTR ERVK -210 112 1 1 936 1237 273 27 30 chr4 46075475 46075913 -109554207 - ERVL-B4-int LTR ERVL -746 4968 4532 1 936 188 346 47 19 chr4 46078049 46078155 -109551965 - MIR3 SINE MIR -53 155 47 1 936 326 349 143 5 chr4 46078225 46078421 -109551699 - MIR SINE MIR -25 237 15 1 936 2968 51 10 5 chr4 46079239 46079633 -109550487 - MTA_Mm LTR MaLR 0 396 1 1 936 411 331 38 70 chr4 46079689 46079731 -109550389 + B4 SINE B4 35 76 -216 1 936 243 0 0 0 chr4 46079731 46079758 -109550362 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1 936 411 331 38 70 chr4 46079758 46079900 -109550220 + B4 SINE B4 77 212 -80 1 936 229 321 0 23 chr4 46080077 46080163 -109549957 + MamRep1161 DNA TcMar 10 93 -864 1 936 252 308 0 104 chr4 46080549 46080647 -109549473 - RMER12 LTR ERVK -466 856 767 1 936 357 24 0 0 chr4 46080647 46080689 -109549431 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 936 252 308 0 104 chr4 46080689 46080724 -109549396 - RMER12 LTR ERVK -556 766 737 1 936 1070 83 0 0 chr4 46081989 46082134 -109547986 - B1_Mm SINE Alu -1 146 2 1 936 209 109 22 0 chr4 46082283 46082329 -109547791 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 936 743 267 62 55 chr4 46082365 46082654 -109547466 + B4A SINE B4 1 291 -1 1 936 245 288 14 0 chr4 46082655 46082728 -109547392 + (CATA)n Simple_repeat Simple_repeat 3 76 0 1 936 346 244 25 116 chr4 46083564 46083684 -109546436 + B1F1 SINE Alu 9 110 -7 1 936 1133 68 0 0 chr4 46083780 46083928 -109546192 - B1_Mus1 SINE Alu 0 148 1 1 936 540 167 180 16 chr4 46083973 46084101 -109546019 - B1_Mur2 SINE Alu 0 149 1 1 936 582 15 0 0 chr4 46085068 46085135 -109544985 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 936 426 226 104 17 chr4 46085350 46085525 -109544595 - L1MB8 LINE L1 -10 6174 5992 1 936 658 322 48 45 chr4 46085536 46085871 -109544249 - MLT1A LTR MaLR -14 360 25 1 936 1268 262 107 48 chr4 46086418 46086943 -109543177 - L1MB8 LINE L1 -260 5918 5351 1 936 237 302 125 0 chr4 46086943 46087039 -109543081 - PB1D10 SINE Alu -9 108 1 1 936 1268 262 107 48 chr4 46087039 46087081 -109543039 - L1MB8 LINE L1 -828 5350 5317 1 936 624 219 92 37 chr4 46087356 46087574 -109542546 - B4A SINE B4 -62 230 1 1 936 1066 218 73 66 chr4 46087624 46088018 -109542102 - L1MB8 LINE L1 -791 5355 4964 1 936 1170 49 0 0 chr4 46088261 46088404 -109541716 + B1_Mus2 SINE Alu 5 147 0 1 936 180 97 0 0 chr4 46088404 46088435 -109541685 + (A)n Simple_repeat Simple_repeat 1 31 0 1 936 237 278 90 27 chr4 46088825 46088936 -109541184 + PB1D7 SINE Alu 3 120 0 1 936 296 102 20 0 chr4 46088976 46089025 -109541095 + (GGA)n Simple_repeat Simple_repeat 3 52 0 1 936 189 242 179 0 chr4 46090335 46090430 -109539690 + MIR3 SINE MIR 90 201 -7 1 936 236 246 18 0 chr4 46090579 46090636 -109539484 + MamRep38 DNA hAT 1 58 -237 1 936 202 386 20 0 chr4 46090951 46091052 -109539068 + MIR3 SINE MIR 66 168 -40 1 936 336 102 0 0 chr4 46091116 46091165 -109538955 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 936 339 308 19 0 chr4 46091597 46091701 -109538419 - MER94 DNA AcHobo -13 121 16 1 936 246 286 14 14 chr4 46092613 46092684 -109537436 + MIRm SINE MIR 203 273 -3 1 936 1014 198 10 10 chr4 46093282 46093491 -109536629 + B3 SINE B2 1 209 -7 1 936 350 231 0 0 chr4 46093666 46093757 -109536363 - L1M3 LINE L1 -793 5353 5263 1 936 348 83 0 0 chr4 46093801 46093849 -109536271 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 936 270 265 191 29 chr4 46093856 46093961 -109536159 - RSINE1 SINE B4 -41 124 3 1 936 276 314 65 14 chr4 46093962 46094101 -109536019 - L1M3 LINE L1 -872 5274 5129 1 936 674 273 186 13 chr4 46094151 46094795 -109535325 - L1M3 LINE L1 -1096 5050 4244 1 936 337 295 133 44 chr4 46094849 46095030 -109535090 - L1M3 LINE L1 -1887 4253 4057 1 936 1296 63 0 0 chr4 46095114 46095434 -109534686 + (CA)n Simple_repeat Simple_repeat 1 320 0 1 936 414 308 96 77 chr4 46095452 46095776 -109534344 - MLT1A LTR MaLR -25 349 20 1 936 593 273 11 23 chr4 46095938 46096114 -109534006 - B3A SINE B2 -16 182 9 1 936 256 246 0 16 chr4 46096555 46096617 -109533503 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 936 326 284 25 41 chr4 46098347 46098468 -109531652 - MIR SINE MIR -10 252 134 1 936 549 0 0 0 chr4 46100982 46101043 -109529077 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 936 274 342 72 0 chr4 46101164 46101181 -109528939 + B4 SINE B4 68 92 -200 1 936 587 175 0 0 chr4 46101181 46101278 -109528842 + PB1D10 SINE Alu 1 97 -20 1 936 599 39 13 0 chr4 46101280 46101358 -109528762 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 936 232 348 54 0 chr4 46101617 46101729 -109528391 - L2c LINE L2 -10 3377 3260 1 936 1113 63 0 0 chr4 46101786 46101928 -109528192 + B1_Mus2 SINE Alu 1 142 -5 1 936 381 231 119 9 chr4 46102108 46102217 -109527903 + B1F SINE Alu 24 144 -5 1 936 282 312 0 12 chr4 46102229 46102310 -109527810 + BC1_Mm scRNA scRNA 2 81 -71 1 936 206 294 57 38 chr4 46102739 46102845 -109527275 + L2c LINE L2 3278 3385 -2 1 936 270 305 12 12 chr4 46102978 46103061 -109527059 - Tigger5 DNA MER2_type 0 2406 2324 1 936 414 342 64 5 chr4 46103115 46103303 -109526817 - Tigger5 DNA MER2_type -2193 213 15 1 936 288 0 0 0 chr4 46104139 46104171 -109525949 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 936 976 246 35 77 chr4 46104174 46104460 -109525660 - B4A SINE B4 -18 274 1 1 936 204 274 27 14 chr4 46106100 46106174 -109523946 + MIR3 SINE MIR 88 162 -46 1 936 377 221 34 23 chr4 46107340 46107428 -109522692 + ID_B1 SINE B4 82 170 -54 1 936 333 239 129 18 chr4 46107428 46107467 -109522653 + PB1D7 SINE Alu 1 140 -9 1 936 195 308 31 52 chr4 46108818 46108914 -109521206 - L2c LINE L2 -24 3363 3270 1 936 857 302 29 4 chr4 46108947 46109226 -109520894 + B4 SINE B4 5 290 -2 1 936 2283 75 3 19 chr4 46110868 46111192 -109518928 - ORR1A2 LTR MaLR -8 319 1 1 936 235 208 0 0 chr4 46111411 46111464 -109518656 + (CCCCAG)n Simple_repeat Simple_repeat 6 58 0 1 936 215 292 0 0 chr4 46111709 46111757 -109518363 + polypyrimidine Low_complexity Low_complexity 3 50 0 1 936 198 221 130 14 chr4 46112805 46112874 -109517246 - MIRm SINE MIR -166 110 34 1 936 223 154 0 0 chr4 46114304 46114343 -109515777 + C-rich Low_complexity Low_complexity 2 40 0 1 936 337 183 50 126 chr4 46114485 46114604 -109515516 - MLT1F2 LTR MaLR -7 553 444 1 936 517 298 71 25 chr4 46114624 46114820 -109515300 - MLT1F1 LTR MaLR -352 217 13 1 936 3674 247 132 9 chr4 46114821 46115932 -109514188 - Lx8 LINE L1 0 7473 6226 1 936 414 0 0 0 chr4 46115932 46115978 -109514142 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 936 209 363 66 0 chr4 46116085 46116176 -109513944 + L3 LINE CR1 4281 4377 -112 1 936 679 178 0 0 chr4 46116298 46116399 -109513721 - B1_Mur2 SINE Alu -23 126 26 1 936 990 17 0 0 chr4 46117177 46117293 -109512827 + (CAGCC)n Simple_repeat Simple_repeat 1 116 0 1 936 216 355 83 13 chr4 46117381 46117538 -109512582 - L3 LINE CR1 -1 4488 4321 1 936 409 226 58 35 chr4 46117559 46117646 -109512474 - B3 SINE B2 -40 176 88 1 936 259 153 88 51 chr4 46117686 46117775 -109512345 - L1M4 LINE L1 -869 5277 5181 1 936 693 301 72 8 chr4 46117827 46118091 -109512029 - B4A SINE B4 -8 284 4 1 936 544 283 64 5 chr4 46118305 46118493 -109511627 - L1M4 LINE L1 -951 5195 4997 1 936 506 272 32 35 chr4 46118501 46118671 -109511449 - B4A SINE B4 -62 162 2 1 936 924 300 132 51 chr4 46118671 46119572 -109510548 - L1M4 LINE L1 -1140 5000 4034 1 936 320 288 0 24 chr4 46120310 46120392 -109509728 + RSINE1 SINE B4 1 80 -85 1 936 1594 182 93 7 chr4 46122286 46122596 -109507524 + MTD LTR MaLR 1 337 -82 1 936 474 292 119 50 chr4 46123597 46124133 -109505987 - L1MA6 LINE L1 -10 6290 5704 1 936 191 223 49 78 chr4 46124531 46124633 -109505487 - MIR SINE MIR -31 231 133 1 936 225 0 0 0 chr4 46125224 46125249 -109504871 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 936 366 23 0 0 chr4 46125269 46125312 -109504808 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 936 678 223 29 0 chr4 46125743 46125882 -109504238 - ID_B1 SINE B4 -1 223 81 1 936 1298 27 0 0 chr4 46128011 46128158 -109501962 + B1_Mus1 SINE Alu 2 148 0 1 936 189 107 0 0 chr4 46128158 46128186 -109501934 + (A)n Simple_repeat Simple_repeat 1 28 0 1 936 272 250 83 0 chr4 46129164 46129236 -109500884 - MER58B DNA MER1_type -19 322 245 1 936 453 262 6 40 chr4 46130152 46130271 -109499849 + PB1D10 SINE Alu 1 119 -1 1 936 495 184 0 44 chr4 46130663 46130754 -109499366 + RSINE1 SINE B4 62 148 -17 1 936 1044 224 48 9 chr4 46131051 46131281 -109498839 + 7SK RNA RNA 1 239 -92 1 936 791 304 98 20 chr4 46131341 46131737 -109498383 - Charlie4a DNA MER1_type -73 435 9 2 936 484 278 164 7 chr4 46134961 46135219 -109494901 + MER33 DNA MER1_type 21 320 -4 2 936 363 291 92 33 chr4 46135366 46135519 -109494601 + RSINE1 SINE B4 4 165 0 2 936 267 182 18 0 chr4 46135566 46135621 -109494499 + L1MC5 LINE L1 7390 7445 -516 2 936 338 212 363 79 chr4 46135724 46135939 -109494181 - B4 SINE B4 -12 280 5 2 936 1395 85 11 16 chr4 46135953 46136144 -109493976 - B2_Mm2 SINE B2 -5 190 1 2 936 311 304 66 20 chr4 46136315 46136466 -109493654 + L1MC5 LINE L1 7778 7935 -26 2 937 827 152 22 0 chr4 46138829 46138967 -109491153 + B1_Mus1 SINE Alu 5 145 -3 2 937 189 0 0 0 chr4 46138970 46138991 -109491129 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2 937 525 237 0 0 chr4 46139667 46139760 -109490360 - B1F1 SINE Alu -56 93 1 2 937 37 0 0 0 chr4 46139788 46139825 -109490295 + AT_rich Low_complexity Low_complexity 1 37 0 2 937 244 286 208 31 chr4 46139831 46139952 -109490168 - L2c LINE L2 -13 3374 3226 2 937 3740 16 0 16 chr4 46139952 46140388 -109489732 + L1Md_F2 LINE L1 6154 6582 0 2 937 244 286 208 31 chr4 46140388 46140526 -109489594 - L2c LINE L2 -162 3225 3070 2 937 216 258 32 16 chr4 46140685 46140748 -109489372 - L2c LINE L2 -607 2812 2749 2 937 1505 88 295 0 chr4 46140962 46141213 -109488907 + ORR1A2 LTR MaLR 3 327 0 2 937 234 302 104 55 chr4 46141396 46141524 -109488596 - L2a LINE L2 -1 3425 3239 2 937 241 246 87 58 chr4 46142868 46142937 -109487183 - MIRb SINE MIR -72 196 126 2 937 785 210 97 0 chr4 46143214 46143400 -109486720 - B3 SINE B2 -10 206 3 2 937 547 264 141 55 chr4 46143664 46143920 -109486200 - B4 SINE B4 -12 280 3 2 937 2237 37 4 4 chr4 46144017 46144290 -109485830 + L1Md_F2 LINE L1 6310 6582 0 2 937 1310 27 6 1 chr4 46144290 46144446 -109485674 + L1Md_F2 LINE L1 5646 5799 -1897 2 937 285 256 49 0 chr4 46144455 46144537 -109485583 - L1M4 LINE L1 -471 5707 5622 2 937 1204 54 0 0 chr4 46145100 46145247 -109484873 + B1_Mus2 SINE Alu 1 147 0 2 937 549 221 71 35 chr4 46145532 46145556 -109484564 + CYRA11_Mm Unknown Y-chromosome 146 175 -442 2 937 1184 79 18 6 chr4 46145556 46145721 -109484399 - URR1A DNA MER1_type -1 225 59 2 937 418 256 246 4 chr4 46146306 46146534 -109483586 + MLT1J1 LTR MaLR 26 308 -136 2 937 356 162 56 56 chr4 46146713 46146785 -109483335 + MT2B LTR ERVL 169 240 -361 2 937 449 139 153 0 chr4 46146721 46146793 -109483327 + B1_Mur4 SINE Alu 12 94 -56 2 937 2425 136 81 21 chr4 46146874 46147309 -109482811 + RMER6B LTR ERVK 1 461 0 2 937 182 62 0 30 chr4 46147638 46147671 -109482449 + (CAA)n Simple_repeat Simple_repeat 1 32 0 2 937 694 114 171 0 chr4 46147961 46148084 -109482036 - B2_Mm2 SINE B2 -1 194 51 2 937 367 311 43 29 chr4 46148589 46148728 -109481392 - L2a LINE L2 -2 3424 3284 2 937 210 71 0 0 chr4 46148744 46148772 -109481348 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 2 937 297 206 25 76 chr4 46149146 46149225 -109480895 - RSINE1 SINE B4 -89 76 2 2 937 994 135 83 0 chr4 46149255 46149482 -109480638 - Lx3B LINE L1 0 7009 6723 2 937 246 315 33 84 chr4 46149502 46149621 -109480499 - PB1 SINE Alu -4 123 2 2 937 1627 157 129 29 chr4 46149701 46150042 -109480078 + RMER10B LTR ERVL 2 376 -22 2 937 381 220 31 104 chr4 46150621 46150775 -109479345 + B3A SINE B2 6 174 -19 2 937 229 350 121 30 chr4 46152500 46152665 -109477455 + MIR SINE MIR 16 195 -67 2 937 334 324 172 23 chr4 46153030 46153292 -109476828 - L2a LINE L2 -189 3237 2937 2 937 254 134 60 193 chr4 46153468 46153551 -109476569 - B1F1 SINE Alu -1 148 77 2 937 1177 68 0 0 chr4 46153731 46153877 -109476243 + B1_Mus2 SINE Alu 2 147 0 2 937 240 35 0 0 chr4 46154247 46154276 -109475844 + (TTCTG)n Simple_repeat Simple_repeat 4 32 0 2 937 570 99 267 0 chr4 46154304 46154405 -109475715 - B1_Mur3 SINE Alu -19 130 3 2 937 1126 149 128 0 chr4 46154624 46154819 -109475301 - URR1A DNA MER1_type -1 225 6 2 937 287 343 91 0 chr4 46154929 46155028 -109475092 - B4A SINE B4 -119 173 66 2 937 241 288 282 41 chr4 46155076 46155246 -109474874 - B4A SINE B4 0 292 82 2 937 343 211 107 71 chr4 46155242 46155263 -109474857 - B1_Mur2 SINE Alu 0 149 130 2 937 2063 146 125 16 chr4 46155263 46155639 -109474481 - MTC LTR MaLR 0 421 5 2 937 343 211 107 71 chr4 46155639 46155729 -109474391 - B1_Mur2 SINE Alu -20 129 34 2 937 308 276 13 13 chr4 46155729 46155806 -109474314 - B3A SINE B2 -97 101 25 2 937 316 206 14 29 chr4 46155739 46155809 -109474311 - B4A SINE B4 -202 90 22 2 937 291 319 58 29 chr4 46156425 46156564 -109473556 - Tigger13a DNA MER2_type -477 294 152 2 937 1245 119 0 85 chr4 46156716 46156927 -109473193 + B2_Mm1a SINE B2 1 193 0 2 937 911 231 22 0 chr4 46156929 46157111 -109473009 + B3 SINE B2 27 212 -4 2 937 651 278 112 32 chr4 46157161 46157410 -109472710 + B4A SINE B4 1 269 -23 2 937 612 174 0 0 chr4 46158680 46158835 -109471285 + (TG)n Simple_repeat Simple_repeat 1 155 0 2 937 328 111 0 0 chr4 46158837 46158882 -109471238 - HAL1-3A_ME LINE L1 -846 2012 1968 2 937 746 208 72 19 chr4 46158973 46159155 -109470965 - B3A SINE B2 -10 185 1 2 937 219 186 0 0 chr4 46159548 46159591 -109470529 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 937 317 213 0 107 chr4 46159592 46159676 -109470444 - RSINE1 SINE B4 -1 164 90 2 937 218 174 72 0 chr4 46160416 46160485 -109469635 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 937 1196 301 92 38 chr4 46160941 46161186 -109468934 - Lx8 LINE L1 -6 7467 7207 2 937 2095 165 150 13 chr4 46161186 46161647 -109468473 - RLTR11A2 LTR ERVK 0 527 4 2 937 1196 301 92 38 chr4 46161647 46161847 -109468273 - Lx8 LINE L1 -267 7206 6998 2 937 350 271 194 29 chr4 46162477 46162652 -109467468 - MER58B DNA MER1_type -126 215 12 2 937 1523 108 72 0 chr4 46163047 46163297 -109466823 + Lx LINE L1 6368 6635 -19 2 937 299 314 63 34 chr4 46164535 46164710 -109465410 - L1MC LINE L1 -2133 5749 5570 2 937 509 284 34 7 chr4 46165030 46165179 -109464941 + RSINE1 SINE B4 3 155 -10 2 937 435 275 0 18 chr4 46166073 46166184 -109463936 - PB1D10 SINE Alu -8 109 1 2 937 180 0 0 0 chr4 46166208 46166228 -109463892 + (TTTTTG)n Simple_repeat Simple_repeat 6 25 0 2 937 494 332 29 39 chr4 46166485 46166689 -109463431 - B4A SINE B4 -3 289 88 2 937 264 341 34 0 chr4 46166746 46166834 -109463286 - PB1D7 SINE Alu -23 97 7 2 937 555 283 69 51 chr4 46166847 46167063 -109463057 - ID_B1 SINE B4 -3 221 2 2 937 459 302 98 53 chr4 46168799 46168960 -109461160 + B4A SINE B4 36 218 -74 2 937 1162 191 19 0 chr4 46168960 46169170 -109460950 - B3 SINE B2 -2 214 1 2 937 459 302 98 53 chr4 46169170 46169253 -109460867 + B4A SINE B4 219 291 -1 2 937 573 42 0 0 chr4 46169881 46169953 -109460167 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 937 628 134 26 113 chr4 46169958 46170109 -109460011 + B1_Mur4 SINE Alu 13 150 0 2 937 401 268 10 10 chr4 46170108 46170206 -109459914 - PB1D10 SINE Alu -13 104 7 2 937 214 250 68 14 chr4 46170141 46170214 -109459906 - B4A SINE B4 -135 157 81 2 937 219 190 31 108 chr4 46171112 46171177 -109458943 - PB1D7 SINE Alu 0 120 61 2 937 519 66 0 0 chr4 46171337 46171413 -109458707 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 937 21 0 0 0 chr4 46171588 46171609 -109458511 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 342 300 24 24 chr4 46172026 46172149 -109457971 + L1M5 LINE L1 5699 5821 -343 2 937 679 176 68 83 chr4 46173388 46173531 -109456589 + B3A SINE B2 10 159 -39 2 937 351 0 0 0 chr4 46173531 46173570 -109456550 + (CATA)n Simple_repeat Simple_repeat 1 39 0 2 937 679 176 68 83 chr4 46173570 46173618 -109456502 + B3A SINE B2 160 198 0 2 937 363 218 73 64 chr4 46173666 46173810 -109456310 + B3 SINE B2 2 154 -39 2 937 684 285 16 31 chr4 46174234 46174426 -109455694 + B4 SINE B4 9 197 -95 2 937 573 208 23 62 chr4 46174318 46174446 -109455674 + B1_Mur1 SINE Alu 7 129 -20 2 937 305 250 0 40 chr4 46174460 46174535 -109455585 + B4 SINE B4 131 202 -90 2 937 773 149 39 33 chr4 46174632 46174785 -109455335 - B2_Mm2 SINE B2 -39 156 3 2 937 1271 167 152 4 chr4 46176249 46176526 -109453594 - MTC LTR MaLR 0 421 104 2 937 519 183 22 49 chr4 46176548 46176732 -109453388 - RMER17C LTR ERVK -135 275 97 2 937 382 234 31 21 chr4 46176732 46176828 -109453292 - MTC LTR MaLR -324 97 1 2 937 447 125 0 0 chr4 46177323 46177395 -109452725 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 937 615 244 37 0 chr4 46178350 46178485 -109451635 + B1_Mur1 SINE Alu 2 141 -8 2 937 227 195 44 12 chr4 46179248 46179304 -109450816 - PB1D10 SINE Alu -10 139 63 2 937 1209 56 0 0 chr4 46179426 46179569 -109450551 - B1_Mus1 SINE Alu -4 144 2 2 937 558 270 27 7 chr4 46180448 46180597 -109449523 - RSINE1 SINE B4 -11 154 3 2 937 1248 27 7 0 chr4 46180800 46180946 -109449174 - B1_Mus2 SINE Alu 0 147 1 2 937 355 258 34 0 chr4 46181114 46181203 -109448917 + PB1D10 SINE Alu 26 117 0 2 937 446 235 47 84 chr4 46181635 46181742 -109448378 + RSINE1 SINE B4 1 103 -62 2 937 1237 54 0 0 chr4 46183617 46183765 -109446355 - B1_Mus1 SINE Alu 0 148 1 2 937 22 0 0 0 chr4 46183779 46183801 -109446319 + AT_rich Low_complexity Low_complexity 1 22 0 2 937 1232 93 0 0 chr4 46183807 46183968 -109446152 + B2_Mm2 SINE B2 2 162 -33 2 937 604 84 53 0 chr4 46187252 46187347 -109442773 - B1_Mur4 SINE Alu -16 134 35 3 937 385 221 35 0 chr4 46188774 46188860 -109441260 - ID_B1 SINE B4 -130 94 6 3 937 439 191 119 37 chr4 46188894 46189003 -109441117 + B3A SINE B2 1 118 -80 3 937 264 350 103 0 chr4 46190841 46190861 -109439259 + B4 SINE B4 65 193 -99 3 937 470 237 62 0 chr4 46190861 46190958 -109439162 + B1_Mur2 SINE Alu 2 104 -45 3 937 234 340 107 0 chr4 46190985 46191088 -109439032 + PB1D10 SINE Alu 4 117 0 3 937 1215 48 7 0 chr4 46191477 46191623 -109438497 - B1_Mus2 SINE Alu 0 147 1 3 937 704 219 18 53 chr4 46191833 46192002 -109438118 - RSINE1 SINE B4 -1 164 2 3 937 417 20 0 0 chr4 46192397 46192447 -109437673 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 937 807 59 244 0 chr4 46193410 46193529 -109436591 - B1_Mus1 SINE Alu 0 148 1 3 937 262 212 57 154 chr4 46194108 46194231 -109435889 + B4A SINE B4 108 218 -74 3 937 833 66 0 0 chr4 46194718 46194824 -109435296 + B1_Mus2 SINE Alu 13 118 -29 3 937 490 221 0 50 chr4 46194867 46194986 -109435134 - PB1D10 SINE Alu 0 117 5 3 937 191 62 0 59 chr4 46195508 46195542 -109434578 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 3 937 230 286 60 35 chr4 46196434 46196550 -109433570 + Kanga1 DNA Tc2 1627 1745 0 3 937 302 273 42 68 chr4 46197595 46197713 -109432407 + PB1D10 SINE Alu 3 117 0 3 937 689 97 0 0 chr4 46198738 46198831 -109431289 - ORR1A2 LTR MaLR -8 319 227 3 937 474 252 43 22 chr4 46198834 46198972 -109431148 + RLTR12B LTR ERVK 5 145 -383 3 937 277 312 68 41 chr4 46199017 46199164 -109430956 + RLTR15 LTR ERVK 197 347 -12 3 937 454 264 75 81 chr4 46199075 46199248 -109430872 + B4A SINE B4 49 220 -72 3 937 1106 51 0 0 chr4 46199117 46199255 -109430865 + B1_Mus1 SINE Alu 11 148 0 3 937 271 70 0 66 chr4 46199256 46199317 -109430803 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 3 937 1579 118 74 84 chr4 46199347 46199644 -109430476 - ORR1B1 LTR MaLR -96 298 5 3 937 1190 131 17 71 chr4 46199645 46199884 -109430236 - ORR1B1-int LTR MaLR 0 1509 1284 3 937 750 229 0 0 chr4 46199884 46200063 -109430057 + (CATA)n Simple_repeat Simple_repeat 2 180 0 3 937 318 106 0 0 chr4 46200072 46200119 -109430001 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 937 328 119 16 33 chr4 46200119 46200171 -109429949 - ORR1B1-int LTR MaLR -220 1150 1098 3 937 513 0 0 0 chr4 46200175 46200232 -109429888 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 937 1710 200 152 69 chr4 46200234 46200927 -109429193 - ORR1B1-int LTR MaLR -518 1445 696 3 937 897 175 46 196 chr4 46200807 46201113 -109429007 - MT2B LTR ERVL -341 260 1 3 937 301 93 0 0 chr4 46201113 46201156 -109428964 - MERVL_2A-int LTR ERVL 0 5761 5719 3 937 3315 170 12 64 chr4 46201156 46201830 -109428290 - ORR1B1-int LTR MaLR -1323 640 2 3 937 2092 145 55 78 chr4 46201830 46202255 -109427865 - ORR1B1 LTR MaLR -16 378 3 3 937 2710 121 52 42 chr4 46202552 46203026 -109427094 - MT2B LTR ERVL 0 601 123 3 937 616 243 50 22 chr4 46203026 46203207 -109426913 + B2_Mm2 SINE B2 1 186 -9 3 937 917 153 0 0 chr4 46203189 46203326 -109426794 - MT2B LTR ERVL -464 137 1 3 937 651 238 52 19 chr4 46203731 46203885 -109426235 - MLT1D LTR MaLR -339 166 8 3 937 1100 56 42 0 chr4 46204798 46204940 -109425180 + B1_Mus1 SINE Alu 1 148 0 3 937 182 62 31 0 chr4 46204948 46204980 -109425140 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3 937 1310 75 46 0 chr4 46204996 46205169 -109424951 + B2_Mm2 SINE B2 1 181 -14 3 937 396 40 0 0 chr4 46205169 46205219 -109424901 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 3 937 302 316 66 40 chr4 46205304 46205578 -109424542 + L1M5 LINE L1 5367 5647 -515 3 937 345 159 0 0 chr4 46205660 46205723 -109424397 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 937 370 213 43 0 chr4 46205731 46205825 -109424295 - Lx6 LINE L1 -2 7458 7361 3 937 186 78 18 89 chr4 46206164 46206220 -109423900 + A-rich Low_complexity Low_complexity 6 57 0 3 937 902 298 76 64 chr4 46206551 46206959 -109423161 - MER21B LTR ERV1 -109 754 342 3 937 360 261 119 13 chr4 46206918 46207077 -109423043 - MER68 LTR ERVL -344 219 44 3 937 252 0 0 0 chr4 46207199 46207227 -109422893 + (A)n Simple_repeat Simple_repeat 1 28 0 3 937 272 221 194 0 chr4 46207569 46207641 -109422479 - ID4 SINE ID -65 87 2 3 937 378 228 78 9 chr4 46207647 46207762 -109422358 - B1F SINE Alu -6 143 21 3 937 321 185 0 0 chr4 46208231 46208296 -109421824 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 937 379 178 100 0 chr4 46208298 46208388 -109421732 + HAL1-3A_ME LINE L1 1975 2073 -785 3 937 392 165 139 0 chr4 46209321 46209400 -109420720 + ID_B1 SINE B4 135 224 0 3 937 1162 279 53 23 chr4 46209737 46210133 -109419987 + L1MB5 LINE L1 5696 6103 -71 3 937 364 301 37 31 chr4 46211479 46211640 -109418480 - L1MB8 LINE L1 -8 6170 6009 3 937 278 291 146 0 chr4 46211647 46211757 -109418363 - L1MB8 LINE L1 -471 5707 5582 3 937 1233 106 22 0 chr4 46211759 46211938 -109418182 + B2_Mm2 SINE B2 2 184 -11 3 937 359 109 354 9 chr4 46211968 46212078 -109418042 + B2_Mm2 SINE B2 47 194 -1 3 937 203 138 0 0 chr4 46212793 46212822 -109417298 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 3 937 457 292 4 18 chr4 46212838 46212957 -109417163 + RSINE1 SINE B4 1 112 -180 3 937 333 271 47 78 chr4 46213286 46213414 -109416706 - MTEb LTR MaLR 0 379 256 3 937 324 323 94 8 chr4 46213439 46213567 -109416553 - MTEb LTR MaLR -226 144 6 3 937 264 59 0 0 chr4 46213642 46213676 -109416444 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 937 772 258 91 0 chr4 46213679 46213865 -109416255 - ID_B1 SINE B4 -21 203 1 3 937 225 194 156 31 chr4 46213882 46213897 -109416223 - L1MA8 LINE L1 -56 6235 6221 3 937 500 257 0 0 chr4 46213897 46214002 -109416118 + PB1D7 SINE Alu 1 105 -15 3 937 225 194 156 31 chr4 46214002 46214082 -109416038 - L1MA8 LINE L1 -71 6220 6128 3 937 26 0 0 0 chr4 46214139 46214165 -109415955 + AT_rich Low_complexity Low_complexity 1 26 0 3 937 363 236 163 9 chr4 46214174 46214284 -109415836 - RSINE1 SINE B4 -30 135 3 3 937 624 186 0 26 chr4 46214481 46214597 -109415523 - PB1D10 SINE Alu -4 113 1 3 937 261 312 57 57 chr4 46215022 46215163 -109414957 + MIRb SINE MIR 20 166 -102 3 937 186 43 0 0 chr4 46215227 46215250 -109414870 + (CAAAC)n Simple_repeat Simple_repeat 4 26 0 3 937 331 296 82 64 chr4 46216187 46216466 -109413654 + L1ME2 LINE L1 5898 6178 -1 3 937 225 0 0 0 chr4 46216528 46216553 -109413567 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 937 207 0 0 0 chr4 46216802 46216825 -109413295 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3 937 716 278 69 24 chr4 46217540 46217831 -109412289 - L1ME3A LINE L1 -275 5898 5595 3 937 264 122 0 0 chr4 46217856 46217897 -109412223 + (A)n Simple_repeat Simple_repeat 1 41 0 3 937 332 203 31 0 chr4 46218176 46218240 -109411880 + ID4_ SINE ID 2 67 -16 3 937 1279 34 0 0 chr4 46218325 46218472 -109411648 - B1_Mus2 SINE Alu 0 147 1 3 937 385 275 0 0 chr4 46218520 46218600 -109411520 - ID4 SINE ID -2 81 2 3 937 277 189 0 117 chr4 46218622 46218682 -109411438 - PB1 SINE Alu 0 127 75 3 937 425 137 82 31 chr4 46218679 46218777 -109411343 - B1F SINE Alu -22 127 25 3 937 200 86 0 28 chr4 46219064 46219100 -109411020 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 3 937 225 320 107 0 chr4 46219666 46219788 -109410332 - MER103 DNA DNA -30 136 2 3 937 403 290 30 22 chr4 46219855 46219989 -109410131 + B1F SINE Alu 1 135 -14 3 937 1168 180 48 0 chr4 46220079 46220285 -109409835 - B3 SINE B2 0 216 1 3 937 771 221 14 64 chr4 46220788 46220980 -109409140 - B3A SINE B2 -6 187 30 3 937 2206 135 82 0 chr4 46220991 46221347 -109408773 - RMER19B LTR ERVK -12 890 506 3 937 1260 203 97 124 chr4 46221341 46221712 -109408408 - RMER19B LTR ERVK -536 366 6 3 937 497 245 143 54 chr4 46222112 46222280 -109407840 + B3A SINE B2 2 184 -14 3 937 201 339 0 0 chr4 46223239 46223304 -109406816 + MIR3 SINE MIR 118 182 -26 3 937 227 284 83 10 chr4 46224014 46224110 -109406010 + MIRc SINE MIR 80 182 -86 3 937 315 305 52 84 chr4 46224953 46225239 -109404881 + B4 SINE B4 16 292 0 3 937 35 34 0 17 chr4 46225260 46225282 -109404838 + AT_rich Low_complexity Low_complexity 1 22 0 3 937 2576 144 11 36 chr4 46225282 46225727 -109404393 + Lx4A LINE L1 6625 7058 0 3 937 35 34 0 17 chr4 46225727 46225764 -109404356 + AT_rich Low_complexity Low_complexity 1 37 0 3 937 1098 61 0 75 chr4 46226162 46226321 -109403799 - B1_Mus2 SINE Alu 0 147 1 3 937 279 359 37 28 chr4 46226444 46226553 -109403567 - B1F SINE Alu -8 141 32 3 937 219 336 54 54 chr4 46227288 46227436 -109402684 + MIRb SINE MIR 100 247 -21 3 937 189 245 0 0 chr4 46227698 46227747 -109402373 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 3 937 794 242 85 5 chr4 46227781 46227980 -109402140 - B3 SINE B2 0 216 2 3 937 302 0 0 26 chr4 46228221 46228260 -109401860 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 937 1070 74 7 0 chr4 46228260 46228395 -109401725 - B1_Mus1 SINE Alu -10 138 3 3 937 237 240 113 24 chr4 46228408 46228532 -109401588 - L1MC4 LINE L1 0 8042 7908 3 937 584 158 29 12 chr4 46228616 46228789 -109401331 + (CA)n Simple_repeat Simple_repeat 2 177 0 3 937 619 117 52 12 chr4 46228805 46228978 -109401142 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 937 255 351 53 21 chr4 46229030 46229219 -109400901 + B2_Mm2 SINE B2 1 195 0 3 937 278 179 320 0 chr4 46229335 46229413 -109400707 - B1F SINE Alu -46 103 1 3 937 238 191 0 0 chr4 46229375 46229422 -109400698 - B4A SINE B4 -169 123 77 3 937 180 304 161 0 chr4 46229923 46230035 -109400085 + MIRc SINE MIR 136 265 -3 3 937 2323 122 8 62 chr4 46230057 46230431 -109399689 - ORR1B1 LTR MaLR 0 394 41 4 937 768 253 6 0 chr4 46230492 46230650 -109399470 - RSINE1 SINE B4 -4 161 3 4 937 365 150 100 0 chr4 46230704 46230764 -109399356 - ID_B1 SINE B4 -27 197 132 4 937 402 21 0 0 chr4 46230764 46230811 -109399309 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 937 221 131 443 0 chr4 46231247 46231308 -109398812 - MIRc SINE MIR -150 118 31 4 937 1338 81 0 0 chr4 46232100 46232598 -109397522 + (TG)n Simple_repeat Simple_repeat 1 498 0 4 937 430 323 15 0 chr4 46233630 46233763 -109396357 + RSINE1 SINE B4 15 149 -16 4 937 414 0 0 0 chr4 46233772 46233818 -109396302 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 937 286 164 36 0 chr4 46233869 46233924 -109396196 + ID_B1 SINE B4 157 213 -11 4 937 234 91 0 0 chr4 46233924 46233957 -109396163 + (CAT)n Simple_repeat Simple_repeat 2 34 0 4 937 300 310 75 12 chr4 46233967 46234127 -109395993 + MER63D DNA AcHobo 115 284 -777 4 937 302 276 18 125 chr4 46234158 46234270 -109395850 + MER63D DNA AcHobo 364 463 -598 4 937 268 241 263 17 chr4 46234356 46234373 -109395747 - B4A SINE B4 -47 245 99 4 937 434 220 69 10 chr4 46234373 46234474 -109395646 - PB1D7 SINE Alu 0 120 14 4 937 256 316 0 0 chr4 46235714 46235790 -109394330 - ID4 SINE ID -6 77 2 4 937 330 240 208 32 chr4 46235907 46236032 -109394088 - B1F2 SINE Alu -1 148 2 4 937 306 271 124 0 chr4 46236198 46236327 -109393793 - L1MA9 LINE L1 -15 6297 6153 4 937 408 179 27 0 chr4 46236328 46236440 -109393680 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 937 395 284 151 11 chr4 46236455 46236640 -109393480 - L1MA9 LINE L1 -189 6123 5913 4 937 283 223 147 62 chr4 46236839 46236968 -109393152 - L1ME3A LINE L1 -11 6162 6023 4 937 385 234 206 0 chr4 46237169 46237276 -109392844 + B3 SINE B2 3 131 -85 4 937 378 0 0 0 chr4 46237287 46237329 -109392791 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 937 649 257 56 32 chr4 46237350 46237555 -109392565 + B3A SINE B2 7 216 0 4 937 2121 111 9 12 chr4 46238017 46238336 -109391784 + ORR1A3 LTR MaLR 1 318 -8 4 937 427 213 25 34 chr4 46240741 46240860 -109389260 + PB1 SINE Alu 34 220 -91 4 937 1250 41 0 7 chr4 46241045 46241193 -109388927 + B1_Mus2 SINE Alu 1 147 0 4 937 246 95 0 0 chr4 46241196 46241238 -109388882 + (A)n Simple_repeat Simple_repeat 1 42 0 4 937 1513 73 16 0 chr4 46241472 46241664 -109388456 + B2_Mm2 SINE B2 1 195 0 4 937 360 214 0 0 chr4 46242683 46242753 -109387367 + ID4 SINE ID 1 70 -13 4 937 333 0 0 0 chr4 46242754 46242791 -109387329 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 937 214 361 14 0 chr4 46242799 46242871 -109387249 - MIRm SINE MIR -202 74 2 4 937 1115 183 195 4 chr4 46243090 46243326 -109386794 - RMER20B LTR ERVK -346 281 1 4 937 225 333 14 27 chr4 46243366 46243440 -109386680 + MT2B2 LTR ERVL 169 241 -343 4 937 368 256 13 13 chr4 46243390 46243469 -109386651 + PB1D10 SINE Alu 35 113 -4 4 937 263 313 112 41 chr4 46243956 46244126 -109385994 - MIR3 SINE MIR -11 197 16 4 937 202 205 0 0 chr4 46245597 46245636 -109384484 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 937 542 216 112 0 chr4 46245850 46245975 -109384145 - B1F SINE Alu -5 144 6 4 937 820 174 82 82 chr4 46246491 46246547 -109383573 - B3 SINE B2 -8 208 168 4 937 3135 152 24 29 chr4 46246547 46247125 -109382995 + RMER15 LTR ERVL 1 575 0 4 937 820 174 82 82 chr4 46247125 46247275 -109382845 - B3 SINE B2 -49 167 2 4 937 323 136 15 11 chr4 46247727 46247795 -109382325 - B3 SINE B2 -131 64 1 4 937 244 225 13 66 chr4 46248259 46248335 -109381785 - MLT1H2 LTR MaLR -336 153 82 4 937 292 388 59 29 chr4 46248572 46248742 -109381378 + MLT1K LTR MaLR 189 363 -232 4 937 888 270 76 104 chr4 46248867 46249289 -109380831 - RLTR12B LTR ERVK -77 451 42 4 937 738 206 61 66 chr4 46249351 46249548 -109380572 - RMER19B LTR ERVK -376 526 331 4 937 2515 221 127 67 chr4 46249536 46250370 -109379750 - RMER19B LTR ERVK -14 888 5 4 937 671 281 37 104 chr4 46250419 46250773 -109379347 + L1MA4A LINE L1 3980 4309 -1834 4 937 17800 43 4 1 chr4 46250824 46253708 -109376412 - L1Md_F2 LINE L1 0 6582 3688 4 937 322 260 26 13 chr4 46254604 46254682 -109375438 - ID4 SINE ID -3 80 2 4 937 18919 64 0 1 chr4 46256809 46260122 -109369998 - L1Md_F LINE L1 -2182 3701 392 4 937 493 285 149 9 chr4 46260127 46260358 -109369762 + B4A SINE B4 25 278 -14 4 937 217 265 56 56 chr4 46260397 46260469 -109369651 + B1F2 SINE Alu 9 80 -69 4 937 489 273 110 29 chr4 46260498 46260634 -109369486 + RSINE1 SINE B4 19 165 0 4 937 6866 3 0 0 chr4 46260699 46261449 -109368671 + L1Md_A LINE L1 4837 5586 -297 4 937 9191 3 0 0 chr4 46261449 46262445 -109367675 + L1Md_A LINE L1 5587 6582 0 4 937 252 333 28 0 chr4 46262451 46262523 -109367597 + ID_B1 SINE B4 151 224 0 4 937 1601 184 130 17 chr4 46262581 46262935 -109367185 + ORR1B1 LTR MaLR 1 394 0 4 937 1177 56 0 0 chr4 46262979 46263121 -109366999 + B1_Mus1 SINE Alu 1 142 -6 4 937 256 77 19 19 chr4 46263122 46263175 -109366945 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 937 443 296 133 0 chr4 46263398 46263594 -109366526 + L1_Mur3 LINE L1 4300 4521 -1359 4 937 1219 254 122 25 chr4 46263569 46264002 -109366118 + Lx8 LINE L1 6997 7471 -2 4 937 1868 312 88 33 chr4 46264041 46265438 -109364682 + L1MA4A LINE L1 4519 6023 -1621 4 937 615 176 0 0 chr4 46265553 46265678 -109364442 + (TG)n Simple_repeat Simple_repeat 1 125 0 4 937 347 98 20 0 chr4 46265678 46265729 -109364391 - HAL1-3A_ME LINE L1 -831 2027 1976 4 937 252 111 0 0 chr4 46265732 46265777 -109364343 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 937 267 233 154 57 chr4 46266182 46266305 -109363815 - MIR SINE MIR -128 140 6 4 937 288 53 0 0 chr4 46266658 46266696 -109363424 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 937 717 306 61 9 chr4 46266711 46267054 -109363066 + Lx8 LINE L1 6865 7225 -248 4 937 4357 35 4 8 chr4 46267054 46267574 -109362546 + L1Md_F2 LINE L1 6065 6582 0 4 937 338 259 51 51 chr4 46267661 46267703 -109362417 + HAL1-3A_ME LINE L1 1975 2016 -842 4 937 1181 106 0 6 chr4 46267703 46267884 -109362236 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 937 338 259 51 51 chr4 46267884 46267959 -109362161 + HAL1-3A_ME LINE L1 2017 2092 -766 4 938 1299 76 0 0 chr4 46269006 46269286 -109360834 + (TG)n Simple_repeat Simple_repeat 1 280 0 4 938 189 121 0 0 chr4 46270083 46270116 -109360004 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 4 938 342 355 29 0 chr4 46270221 46270359 -109359761 + L2c LINE L2 3024 3165 -222 4 938 3394 122 45 83 chr4 46270723 46271348 -109358772 + MT2B LTR ERVL 1 601 0 4 938 210 342 61 9 chr4 46271422 46271537 -109358583 - MIRc SINE MIR -134 134 14 4 938 209 346 13 0 chr4 46272004 46272082 -109358038 - MIR SINE MIR -81 127 49 4 938 213 316 4 84 chr4 46272423 46272532 -109357588 - L2a LINE L2 -54 3372 3275 4 938 1113 209 5 0 chr4 46272824 46273020 -109357100 + B3 SINE B2 1 197 -19 4 938 551 300 64 60 chr4 46273279 46273565 -109356555 - B4A SINE B4 0 292 2 4 938 209 369 8 47 chr4 46274658 46274786 -109355334 + MIR SINE MIR 30 152 -56 4 938 195 211 0 0 chr4 46274791 46274829 -109355291 + MIRm SINE MIR 119 156 -120 4 938 328 301 109 25 chr4 46275162 46275363 -109354757 - L1MC2 LINE L1 -174 7708 7491 4 938 302 260 72 86 chr4 46275477 46275616 -109354504 - MLT1F1 LTR MaLR -432 137 1 4 938 340 235 153 7 chr4 46275621 46275758 -109354362 - L1MC2 LINE L1 -722 7273 7117 4 938 801 294 35 13 chr4 46275800 46276031 -109354089 + B4A SINE B4 1 236 -56 4 938 862 173 21 4 chr4 46276063 46276305 -109353815 + (CA)n Simple_repeat Simple_repeat 1 246 0 4 938 267 223 11 29 chr4 46276460 46276529 -109353591 - L1MC2 LINE L1 -1150 6845 6750 4 938 277 296 118 48 chr4 46276818 46277116 -109353004 - L1MC2 LINE L1 -1224 6658 6346 4 938 198 304 0 0 chr4 46277753 46277799 -109352321 + MIR3 SINE MIR 114 159 -49 4 938 794 200 21 0 chr4 46277947 46278092 -109352028 - RSINE1 SINE B4 -17 148 1 4 938 696 279 0 38 chr4 46278108 46278268 -109351852 - ID_B1 SINE B4 -2 222 69 4 938 488 233 69 37 chr4 46278369 46278587 -109351533 - L1MC2 LINE L1 -1 6343 6119 4 938 1429 223 124 75 chr4 46278781 46279168 -109350952 - MTD LTR MaLR -12 407 2 4 938 408 351 110 39 chr4 46279261 46279625 -109350495 + LTR33 LTR ERVL 12 401 -114 4 938 233 335 75 19 chr4 46279694 46279855 -109350265 + MIR SINE MIR 87 256 -6 4 938 229 301 64 64 chr4 46281180 46281290 -109348830 - MIRc SINE MIR -70 198 89 4 938 219 103 0 0 chr4 46281641 46281680 -109348440 + (GCTG)n Simple_repeat Simple_repeat 1 39 0 4 938 383 312 138 6 chr4 46282171 46282345 -109347775 + B4 SINE B4 2 198 -94 4 938 700 229 144 15 chr4 46282350 46282545 -109347575 + ID_B1 SINE B4 1 220 -4 4 938 705 248 7 0 chr4 46282551 46282688 -109347432 + B1_Mus2 SINE Alu 1 138 -9 4 938 186 43 0 0 chr4 46282688 46282711 -109347409 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 938 234 62 0 0 chr4 46282768 46282800 -109347320 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 938 361 261 53 66 chr4 46283050 46283230 -109346890 - MIR3 SINE MIR -17 191 24 4 938 567 254 0 0 chr4 46283500 46283610 -109346510 + PB1D10 SINE Alu 2 111 -6 4 938 903 159 222 0 chr4 46283640 46283816 -109346304 + B3 SINE B2 2 216 0 4 938 230 315 117 37 chr4 46284213 46284401 -109345719 - L2a LINE L2 -10 3416 3214 4 938 378 293 56 24 chr4 46284570 46284696 -109345424 - MIR SINE MIR -56 152 23 4 938 919 262 125 10 chr4 46285436 46285700 -109344420 - ORR1E LTR MaLR -19 340 46 4 938 513 0 0 0 chr4 46285700 46285757 -109344363 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 938 919 262 125 10 chr4 46285757 46285797 -109344323 - ORR1E LTR MaLR -314 45 2 4 938 1155 213 80 52 chr4 46286102 46286389 -109343731 + ORR1D-int LTR MaLR 92 386 -984 5 938 528 16 0 0 chr4 46287159 46287220 -109342900 + (GGA)n Simple_repeat Simple_repeat 3 63 0 5 938 1345 284 64 55 chr4 46287862 46288331 -109341789 + ORR1D-int LTR MaLR 376 848 -522 5 938 483 231 10 0 chr4 46288449 46288553 -109341567 - ID_B1 SINE B4 -2 222 118 5 938 230 0 33 0 chr4 46288573 46288603 -109341517 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 938 601 211 65 0 chr4 46288606 46288729 -109341391 - B1F SINE Alu -14 135 5 5 938 351 289 39 0 chr4 46289096 46289200 -109340920 - Charlie5 DNA MER1_type -2516 108 1 5 938 22 0 0 0 chr4 46289215 46289237 -109340883 + AT_rich Low_complexity Low_complexity 1 22 0 5 938 270 179 0 0 chr4 46289237 46289293 -109340827 + G-rich Low_complexity Low_complexity 4 59 0 5 938 245 317 12 35 chr4 46289644 46289729 -109340391 - MIRb SINE MIR -73 195 113 5 938 228 278 115 40 chr4 46290383 46290528 -109339592 - MIR3 SINE MIR -88 188 30 5 938 612 283 27 54 chr4 46290606 46290830 -109339290 - MER44B DNA MER2_type -12 538 321 5 938 288 111 0 0 chr4 46290853 46290898 -109339222 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 938 3094 134 39 24 chr4 46290907 46291441 -109338679 - RMER19B LTR ERVK -12 890 349 5 938 924 212 36 3 chr4 46291454 46291729 -109338391 - RMER19B LTR ERVK -675 227 1 5 938 317 248 58 0 chr4 46291740 46291882 -109338238 + L1MA4 LINE L1 5749 5906 -1567 5 938 198 0 0 0 chr4 46293348 46293370 -109336750 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 938 369 235 0 14 chr4 46293378 46293447 -109336673 - RSINE1 SINE B4 -96 69 2 5 938 2173 182 47 10 chr4 46293553 46293959 -109336161 - MTC LTR MaLR 0 421 1 5 938 229 321 92 108 chr4 46293961 46294212 -109335908 - ORR1D1 LTR MaLR -47 327 81 5 938 241 244 0 0 chr4 46294229 46294274 -109335846 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 938 394 283 25 0 chr4 46294403 46294562 -109335558 + HAL1 LINE L1 1405 1567 -940 5 938 338 323 30 42 chr4 46294667 46294832 -109335288 - RSINE1 SINE B4 0 165 3 5 938 235 310 11 11 chr4 46294971 46295058 -109335062 + MER96B DNA hAT 250 336 -81 5 938 396 253 0 78 chr4 46295058 46295099 -109335021 + BC1_Mm scRNA scRNA 2 39 -113 5 938 948 169 121 24 chr4 46295099 46295305 -109334815 + URR1A DNA MER1_type 1 226 0 5 938 396 253 0 78 chr4 46295305 46295366 -109334754 + BC1_Mm scRNA scRNA 40 96 -56 5 938 349 287 21 11 chr4 46295362 46295457 -109334663 - MER96B DNA hAT -319 98 3 5 938 300 317 58 11 chr4 46295461 46295652 -109334468 + HAL1 LINE L1 1680 1879 -628 5 938 619 242 61 37 chr4 46295994 46296290 -109333830 + L1MA9 LINE L1 5094 5396 -744 5 938 441 323 47 0 chr4 46296562 46296689 -109333431 + B1F SINE Alu 1 133 -16 5 938 948 292 91 45 chr4 46296768 46297584 -109332536 + L1MA9 LINE L1 5411 6279 -33 5 938 25 51 0 0 chr4 46297612 46297651 -109332469 + AT_rich Low_complexity Low_complexity 1 39 0 5 938 335 289 14 86 chr4 46297763 46297903 -109332217 + HAL1 LINE L1 2301 2430 -77 5 938 493 303 83 6 chr4 46298021 46298177 -109331943 + B4A SINE B4 9 176 -116 5 938 303 314 9 73 chr4 46298181 46298291 -109331829 + HAL1 LINE L1 1973 2075 -783 5 938 341 301 147 25 chr4 46298368 46298695 -109331425 + HAL1 LINE L1 2034 2400 -107 5 938 205 343 134 38 chr4 46298817 46299026 -109331094 + L3 LINE CR1 4251 4479 -10 5 938 493 300 64 59 chr4 46299274 46299476 -109330644 + B4A SINE B4 4 206 -86 5 938 354 61 0 0 chr4 46299560 46299609 -109330511 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 938 739 256 42 33 chr4 46300092 46300306 -109329814 + MER20 DNA MER1_type 1 216 -3 5 938 195 114 0 0 chr4 46300490 46300525 -109329595 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 5 938 1091 333 88 17 chr4 46301344 46301830 -109328290 + MLT1H1 LTR MaLR 5 518 -30 5 938 245 300 14 0 chr4 46301932 46302002 -109328118 + ID4_ SINE ID 2 72 -11 5 938 1260 102 0 0 chr4 46302010 46302366 -109327754 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 5 938 468 0 0 0 chr4 46302366 46302418 -109327702 + (CATA)n Simple_repeat Simple_repeat 1 52 0 5 938 309 51 0 0 chr4 46302424 46302463 -109327657 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 5 938 376 291 150 46 chr4 46302466 46302639 -109327481 + L1MC5 LINE L1 7049 7239 -722 5 938 308 305 62 73 chr4 46302785 46302952 -109327168 + L1MC5 LINE L1 7322 7487 -474 5 938 476 226 103 9 chr4 46302952 46303059 -109327061 + PB1D7 SINE Alu 3 119 -1 5 938 605 233 77 77 chr4 46303192 46303387 -109326733 + B3A SINE B2 4 198 0 5 938 970 238 30 4 chr4 46303475 46303711 -109326409 - Lx8 LINE L1 -80 7393 7152 5 938 25 0 0 0 chr4 46303757 46303782 -109326338 + AT_rich Low_complexity Low_complexity 1 25 0 5 938 598 291 72 74 chr4 46303997 46304262 -109325858 + B4A SINE B4 8 289 -3 5 938 221 182 23 0 chr4 46304278 46304322 -109325798 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 938 182 281 99 22 chr4 46305781 46305872 -109324248 + MIRb SINE MIR 8 105 -163 5 938 302 309 50 30 chr4 46306490 46306590 -109323530 - B4A SINE B4 -4 288 187 5 938 464 338 20 27 chr4 46306594 46306740 -109323380 - RSINE1 SINE B4 -17 148 4 5 938 1050 224 52 4 chr4 46306740 46306960 -109323160 - B4A SINE B4 -57 235 5 5 938 2135 171 63 0 chr4 46306931 46307294 -109322826 + RMER15 LTR ERVL 190 575 0 5 938 309 217 20 89 chr4 46307294 46307334 -109322786 - B3A SINE B2 -164 34 2 5 938 999 206 25 0 chr4 46307717 46307921 -109322199 - B3 SINE B2 -6 210 2 5 938 912 220 13 83 chr4 46308443 46308671 -109321449 - B3 SINE B2 0 216 5 5 938 22 35 0 0 chr4 46308677 46308706 -109321414 + AT_rich Low_complexity Low_complexity 1 29 0 5 938 742 234 42 39 chr4 46308718 46308931 -109321189 - B3A SINE B2 -5 211 1 5 938 248 176 12 139 chr4 46308933 46308986 -109321134 - Charlie4a DNA MER1_type -69 439 398 5 938 1411 74 16 26 chr4 46308986 46309179 -109320941 + B2_Mm2 SINE B2 1 191 -4 5 938 248 176 12 139 chr4 46309179 46309211 -109320909 - Charlie4a DNA MER1_type -111 397 365 5 938 914 240 5 5 chr4 46309215 46309399 -109320721 + B3 SINE B2 1 184 -32 5 938 453 19 0 0 chr4 46309400 46309454 -109320666 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 938 830 193 7 0 chr4 46309454 46309594 -109320526 - B1_Mus2 SINE Alu -3 144 4 5 938 3856 182 76 70 chr4 46309637 46310808 -109319312 - RMER1A Other Other -1 1065 8 5 938 324 0 0 0 chr4 46310945 46310981 -109319139 + (GATTG)n Simple_repeat Simple_repeat 2 37 0 5 938 307 295 130 79 chr4 46311169 46311330 -109318790 + L1MB8 LINE L1 5899 6082 -96 5 938 1245 49 0 0 chr4 46311330 46311474 -109318646 + B1_Mus2 SINE Alu 2 145 -2 5 938 307 295 130 79 chr4 46311474 46311566 -109318554 + L1MB8 LINE L1 6083 6165 -13 5 938 879 137 8 0 chr4 46311652 46311783 -109318337 - B1_Mur2 SINE Alu -1 148 17 5 938 28 48 0 0 chr4 46311785 46311827 -109318293 + AT_rich Low_complexity Low_complexity 1 42 0 5 938 239 282 183 36 chr4 46311853 46312077 -109318043 + L1MEc LINE L1 1342 1598 -4802 5 938 886 246 234 3 chr4 46312187 46312538 -109317582 + Lx8 LINE L1 7042 7473 0 5 938 779 307 80 18 chr4 46312545 46312993 -109317127 + L1MB5 LINE L1 5417 5892 -282 5 938 393 258 31 10 chr4 46313318 46313416 -109316704 + B1F SINE Alu 25 124 -25 5 938 1380 30 0 0 chr4 46313416 46313581 -109316539 + (GGAGA)n Simple_repeat Simple_repeat 4 168 0 5 938 490 272 139 83 chr4 46313614 46313784 -109316336 + L1ME1 LINE L1 5481 5645 -534 5 938 414 0 0 0 chr4 46313784 46313830 -109316290 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 938 490 272 139 83 chr4 46313830 46313977 -109316143 + L1ME1 LINE L1 5646 5819 -360 5 938 1658 26 5 0 chr4 46313977 46314167 -109315953 + B2_Mm1t SINE B2 2 192 -1 5 938 490 272 139 83 chr4 46314167 46314344 -109315776 + L1ME1 LINE L1 5820 6003 -176 5 938 345 318 33 5 chr4 46314367 46314502 -109315618 + PB1D7 SINE Alu 1 134 -15 5 938 979 252 187 55 chr4 46314566 46315111 -109315009 - Lx8 LINE L1 0 7473 6857 5 938 297 0 0 0 chr4 46315249 46315282 -109314838 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 938 510 17 0 0 chr4 46315282 46315340 -109314780 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 938 266 109 17 76 chr4 46315372 46315491 -109314629 + (TTTG)n Simple_repeat Simple_repeat 1 112 0 5 938 293 256 0 37 chr4 46315491 46315572 -109314548 - B4A SINE B4 -73 219 142 5 938 2725 97 38 19 chr4 46315851 46316271 -109313849 + Lx LINE L1 6227 6654 0 5 938 527 307 33 22 chr4 46316650 46316830 -109313290 + MIRc SINE MIR 50 231 -37 5 938 414 191 78 9 chr4 46317343 46317459 -109312661 + L1MB2 LINE L1 6019 6142 -29 5 938 230 204 64 9 chr4 46317504 46317613 -109312507 + GA-rich Low_complexity Low_complexity 4 118 0 5 938 219 69 0 0 chr4 46317633 46317662 -109312458 + (A)n Simple_repeat Simple_repeat 1 29 0 5 938 216 67 0 0 chr4 46317771 46317801 -109312319 + (CCG)n Simple_repeat Simple_repeat 1 30 0 5 938 528 224 39 16 chr4 46318149 46318276 -109311844 + RSINE1 SINE B4 23 152 -13 5 938 493 304 155 48 chr4 46319012 46319264 -109310856 + MLT1A0 LTR MaLR 67 345 -20 5 938 205 143 48 0 chr4 46319323 46319365 -109310755 + (TATG)n Simple_repeat Simple_repeat 3 46 0 5 938 559 301 12 30 chr4 46319365 46319533 -109310587 - RSINE1 SINE B4 0 165 1 5 938 390 319 0 50 chr4 46319725 46319844 -109310276 + PB1D7 SINE Alu 1 113 -7 5 938 231 283 0 54 chr4 46319896 46320008 -109310112 + L1ME4a LINE L1 5976 6081 -43 5 938 350 250 159 14 chr4 46320287 46320425 -109309695 - MIR3 SINE MIR -37 171 14 5 938 360 0 0 0 chr4 46320467 46320507 -109309613 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 938 235 267 196 56 chr4 46320627 46320734 -109309386 - MIRb SINE MIR -93 175 54 5 938 709 324 27 5 chr4 46320875 46321098 -109309022 + MIR SINE MIR 14 241 -21 5 938 463 205 0 33 chr4 46321165 46321256 -109308864 + RSINE1 SINE B4 3 90 -75 5 938 877 218 20 82 chr4 46321924 46322119 -109308001 - B3A SINE B2 -14 184 2 6 938 417 312 36 14 chr4 46322313 46322483 -109307637 + MLT1D LTR MaLR 1 165 -462 6 938 310 222 80 10 chr4 46322576 46322676 -109307444 + MLT1J1 LTR MaLR 31 137 -307 6 938 369 93 0 0 chr4 46322682 46322736 -109307384 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 938 242 253 63 42 chr4 46323016 46323206 -109306914 + RMER17A2 LTR ERVK 222 415 -491 6 938 353 303 88 35 chr4 46323295 46323466 -109306654 + MIRb SINE MIR 7 186 -82 6 938 382 324 64 12 chr4 46323752 46323924 -109306196 + MIRb SINE MIR 88 268 0 6 938 22 0 0 0 chr4 46324333 46324355 -109305765 + AT_rich Low_complexity Low_complexity 1 22 0 6 938 243 122 0 0 chr4 46324857 46324906 -109305214 + (T)n Simple_repeat Simple_repeat 1 49 0 6 938 317 321 142 13 chr4 46325080 46325383 -109304737 - L1MB7 LINE L1 -26 6158 5817 6 938 180 216 151 38 chr4 46325385 46325438 -109304682 + L2a LINE L2 3343 3401 -25 6 938 401 200 70 0 chr4 46325756 46325856 -109304264 + PB1D10 SINE Alu 5 111 -6 6 938 414 0 0 0 chr4 46326110 46326156 -109303964 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 938 391 259 27 0 chr4 46326299 46326411 -109303709 - L1MB4 LINE L1 -253 5927 5813 6 938 999 205 80 5 chr4 46326469 46326670 -109303450 - B3 SINE B2 0 216 1 6 938 504 274 30 30 chr4 46326704 46326836 -109303284 + B4 SINE B4 2 133 -159 6 938 701 270 17 75 chr4 46327038 46327271 -109302849 + B4 SINE B4 90 291 -1 6 938 222 206 57 11 chr4 46327273 46327385 -109302735 + (CA)n Simple_repeat Simple_repeat 1 117 0 6 938 378 0 0 0 chr4 46327385 46327427 -109302693 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 938 191 163 65 11 chr4 46327427 46327503 -109302617 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 938 662 244 8 37 chr4 46327610 46327769 -109302351 - ID_B1 SINE B4 -1 223 82 6 938 407 287 12 37 chr4 46327769 46327859 -109302261 - L1MB4 LINE L1 -582 5592 5506 6 938 1067 221 176 27 chr4 46327859 46328189 -109301931 + MTE2a LTR MaLR 1 379 0 6 938 1175 255 80 12 chr4 46328189 46328766 -109301354 - L1MB4 LINE L1 -2537 5505 4935 6 938 763 203 28 90 chr4 46328820 46329031 -109301089 + B3A SINE B2 1 198 0 6 938 369 304 54 0 chr4 46329055 46329167 -109300953 + PB1 SINE Alu 6 123 -4 6 938 901 182 0 0 chr4 46329183 46329331 -109300789 + B1_Mus1 SINE Alu 1 148 0 6 938 291 318 28 0 chr4 46329598 46329705 -109300415 - L1MB4 LINE L1 -1363 4783 4674 6 938 911 302 30 10 chr4 46329717 46330015 -109300105 + Lx6 LINE L1 6988 7291 -169 6 938 22 0 0 0 chr4 46330015 46330037 -109300083 + AT_rich Low_complexity Low_complexity 1 22 0 6 938 886 246 105 87 chr4 46330113 46330446 -109299674 + ORR1E LTR MaLR 1 379 0 6 938 1077 276 14 4 chr4 46330446 46330726 -109299394 + ORR1E-int LTR MaLR 1 283 -1297 6 938 850 112 112 0 chr4 46330816 46330950 -109299170 + B1_Mur4 SINE Alu 2 150 0 6 938 750 241 48 24 chr4 46331010 46331176 -109298944 + B3A SINE B2 5 174 -24 6 938 678 25 0 0 chr4 46331177 46331257 -109298863 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 938 2468 153 2 13 chr4 46331735 46332133 -109297987 - ORR1B1 LTR MaLR 0 394 1 6 938 392 0 21 0 chr4 46332257 46332305 -109297815 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 938 367 302 34 61 chr4 46332368 46332516 -109297604 + B1F SINE Alu 3 146 -3 6 938 1021 209 67 0 chr4 46332517 46332727 -109297393 + ID_B1 SINE B4 1 224 0 6 938 432 158 0 0 chr4 46332727 46332803 -109297317 + A-rich Low_complexity Low_complexity 1 76 0 6 938 604 278 0 0 chr4 46332875 46333008 -109297112 + B3 SINE B2 3 135 -81 6 938 1101 119 0 0 chr4 46333009 46333168 -109296952 + ORR1B1 LTR MaLR 34 192 -202 6 938 344 247 26 0 chr4 46333195 46333272 -109296848 + B3 SINE B2 130 208 -8 6 938 590 273 7 14 chr4 46333297 46333438 -109296682 + B1_Mur1 SINE Alu 2 141 -8 6 938 328 271 116 0 chr4 46333446 46333575 -109296545 + L1MB2 LINE L1 5908 6051 -120 6 938 280 299 166 14 chr4 46333651 46333790 -109296330 + RSINE1 SINE B4 3 162 -3 6 938 625 64 21 11 chr4 46333818 46333913 -109296207 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 6 938 420 375 70 13 chr4 46334605 46334832 -109295288 + L1ME4a LINE L1 5672 5911 -213 6 938 219 224 99 66 chr4 46334857 46334948 -109295172 - MIRb SINE MIR -32 236 143 6 938 374 154 0 13 chr4 46335304 46335383 -109294737 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 6 938 489 17 0 0 chr4 46335474 46335532 -109294588 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 938 255 289 119 40 chr4 46336499 46336600 -109293520 + MIRc SINE MIR 56 164 -104 6 938 522 46 0 0 chr4 46336717 46336782 -109293338 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 938 353 301 11 0 chr4 46337451 46337544 -109292576 + RSINE1 SINE B4 62 155 -10 6 938 432 37 0 0 chr4 46337654 46337708 -109292412 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 938 21 0 0 0 chr4 46337725 46337746 -109292374 + AT_rich Low_complexity Low_complexity 1 21 0 6 938 359 313 34 88 chr4 46337874 46337900 -109292220 + B4A SINE B4 78 216 -76 6 938 732 175 0 8 chr4 46337900 46338021 -109292099 + B1_Mur1 SINE Alu 19 138 -11 6 938 226 187 46 138 chr4 46337951 46338038 -109292082 - RLTR43A LTR ERVK -114 250 172 6 938 216 0 0 0 chr4 46338705 46338729 -109291391 + (A)n Simple_repeat Simple_repeat 1 24 0 6 938 966 234 9 23 chr4 46339207 46339426 -109290694 + B3 SINE B2 1 216 0 6 938 1379 73 6 6 chr4 46339449 46339627 -109290493 + B2_Mm1t SINE B2 2 179 -14 6 938 366 118 360 3 chr4 46339659 46339770 -109290350 + B2_Mm2 SINE B2 47 195 0 6 938 180 0 0 0 chr4 46340756 46340776 -109289344 + (A)n Simple_repeat Simple_repeat 1 20 0 6 938 261 0 0 0 chr4 46340890 46340919 -109289201 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 938 212 222 0 0 chr4 46340974 46341010 -109289110 + G-rich Low_complexity Low_complexity 5 40 0 6 938 1134 75 7 0 chr4 46341182 46341328 -109288792 + B1_Mus1 SINE Alu 2 148 0 6 938 216 304 0 45 chr4 46342207 46342362 -109287758 + (CACTG)n Simple_repeat Simple_repeat 5 152 0 6 938 364 260 0 0 chr4 46342807 46342884 -109287236 - B1F2 SINE Alu -71 78 2 6 938 267 264 69 86 chr4 46343029 46343203 -109286917 - Charlie23a DNA MER1_type -83 256 86 6 938 1034 269 52 40 chr4 46343215 46343564 -109286556 + ORR1E LTR MaLR 1 353 -6 6 938 180 0 0 0 chr4 46343584 46343604 -109286516 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 938 1829 148 87 15 chr4 46343693 46344028 -109286092 + RLTR15 LTR ERVK 1 359 0 6 938 3030 133 101 23 chr4 46344057 46344580 -109285540 - RLTR12A LTR ERVK -4 564 1 6 938 216 275 83 48 chr4 46345023 46345107 -109285013 + MIR SINE MIR 166 252 -10 6 938 266 243 0 75 chr4 46345382 46345462 -109284658 + L1ME2z LINE L1 2687 2760 -3386 6 938 450 0 0 0 chr4 46345551 46345601 -109284519 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 938 3561 266 60 32 chr4 46345669 46346787 -109283333 - Lx7 LINE L1 -418 7278 6130 6 938 1353 227 118 18 chr4 46346788 46347286 -109282834 + Lx7 LINE L1 5527 6068 -1628 6 938 615 232 52 9 chr4 46347305 46347518 -109282602 + L1ME2z LINE L1 2751 2972 -3174 6 938 804 240 28 11 chr4 46347552 46347729 -109282391 - B3A SINE B2 -16 182 3 6 938 247 298 0 0 chr4 46347918 46347975 -109282145 + ORR1D2 LTR MaLR 8 64 -306 6 938 442 169 23 35 chr4 46347977 46348063 -109282057 - B3A SINE B2 -113 85 1 6 938 3877 43 12 62 chr4 46348082 46348601 -109281519 + MT2_Mm LTR ERVL 1 493 0 6 938 317 265 65 14 chr4 46348630 46348768 -109281352 + L1MC2 LINE L1 6094 6238 -106 6 938 864 218 33 38 chr4 46348880 46349090 -109281030 + B3 SINE B2 1 209 -7 6 938 926 162 7 0 chr4 46349114 46349262 -109280858 - B1_Mur4 SINE Alu 0 150 2 6 938 477 279 173 6 chr4 46349274 46349713 -109280407 + L1ME2z LINE L1 5469 5985 -459 6 938 29 0 0 0 chr4 46349752 46349781 -109280339 + AT_rich Low_complexity Low_complexity 1 29 0 6 938 21 0 0 0 chr4 46349987 46350008 -109280112 + AT_rich Low_complexity Low_complexity 1 21 0 6 938 324 341 83 0 chr4 46350014 46350146 -109279974 + B1F SINE Alu 1 143 -6 6 938 678 250 150 33 chr4 46350153 46350393 -109279727 + B4 SINE B4 2 269 -23 6 938 243 0 0 0 chr4 46350393 46350420 -109279700 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 938 525 134 0 0 chr4 46350420 46350532 -109279588 + (GA)n Simple_repeat Simple_repeat 1 112 0 6 938 217 0 61 0 chr4 46352985 46353018 -109277102 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 938 207 0 0 0 chr4 46353081 46353104 -109277016 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 938 261 0 0 0 chr4 46353442 46353471 -109276649 + (GTTTG)n Simple_repeat Simple_repeat 4 32 0 6 938 342 80 0 0 chr4 46354832 46354882 -109275238 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 938 346 83 0 20 chr4 46355635 46355684 -109274436 + HAL1-3A_ME LINE L1 1965 2012 -846 6 938 240 163 0 0 chr4 46355684 46355727 -109274393 + (CG)n Simple_repeat Simple_repeat 2 44 0 6 938 26 74 0 0 chr4 46357139 46357193 -109272927 + GC_rich Low_complexity Low_complexity 1 54 0 6 938 207 100 0 0 chr4 46357563 46357593 -109272527 + (CCG)n Simple_repeat Simple_repeat 2 31 0 6 938 22 35 0 0 chr4 46359233 46359262 -109270858 + AT_rich Low_complexity Low_complexity 1 29 0 6 938 225 0 0 0 chr4 46359453 46359478 -109270642 + (TAA)n Simple_repeat Simple_repeat 1 25 0 6 938 279 0 0 0 chr4 46359581 46359612 -109270508 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 938 180 0 0 0 chr4 46359612 46359631 -109270489 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 938 288 0 0 0 chr4 46359631 46359662 -109270458 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 938 688 255 97 12 chr4 46359731 46359989 -109270131 - MER33 DNA MER1_type -8 316 37 6 938 1226 28 14 0 chr4 46361376 46361520 -109268600 + B1_Mm SINE Alu 2 147 0 7 938 327 220 61 44 chr4 46361594 46361708 -109268412 + PB1D7 SINE Alu 5 120 0 7 938 187 281 170 40 chr4 46362029 46362129 -109267991 + MIR3 SINE MIR 81 193 -15 7 938 228 234 15 15 chr4 46362221 46362286 -109267834 + C-rich Low_complexity Low_complexity 4 68 0 7 938 253 284 15 0 chr4 46362286 46362353 -109267767 + MER5A1 DNA MER1_type 55 122 -44 7 938 1043 190 39 0 chr4 46362706 46362885 -109267235 + B3 SINE B2 2 187 -29 7 938 851 242 14 18 chr4 46362987 46363210 -109266910 + ID_B1 SINE B4 1 222 -2 7 938 238 256 0 0 chr4 46364304 46364347 -109265773 - ID4_ SINE ID -20 63 21 7 938 1027 141 177 0 chr4 46365073 46365265 -109264855 - URR1A DNA MER1_type 0 226 1 7 938 183 275 81 70 chr4 46365284 46365370 -109264750 + L2 LINE L2 1279 1365 -2054 7 938 225 65 0 0 chr4 46365557 46365588 -109264532 + (G)n Simple_repeat Simple_repeat 1 31 0 7 938 196 226 37 19 chr4 46366819 46366873 -109263247 + MIRb SINE MIR 162 216 -52 7 938 227 213 51 39 chr4 46366900 46366978 -109263142 + ID4 SINE ID 1 79 -4 7 938 441 243 0 0 chr4 46367197 46367341 -109262779 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 938 599 206 6 17 chr4 46367358 46367536 -109262584 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 938 580 138 22 54 chr4 46367571 46367755 -109262365 + (CATA)n Simple_repeat Simple_repeat 1 178 0 7 938 256 212 11 23 chr4 46367767 46367854 -109262266 + (CATA)n Simple_repeat Simple_repeat 1 86 0 7 938 258 105 0 0 chr4 46367910 46367948 -109262172 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 938 333 318 68 62 chr4 46367958 46368181 -109261939 - B4 SINE B4 -6 286 66 7 938 192 350 76 17 chr4 46369334 46369453 -109260667 + L3 LINE CR1 4358 4483 -6 7 938 361 244 130 0 chr4 46369903 46370026 -109260094 + ID_B1 SINE B4 79 217 -7 7 938 264 59 0 0 chr4 46370036 46370070 -109260050 + (TACTG)n Simple_repeat Simple_repeat 1 34 0 7 938 1080 88 0 0 chr4 46370090 46370227 -109259893 + B1_Mus1 SINE Alu 2 138 -10 7 938 888 37 0 0 chr4 46370227 46370335 -109259785 + (GAAA)n Simple_repeat Simple_repeat 2 109 0 7 938 231 303 66 22 chr4 46370965 46371056 -109259064 + MLT1D LTR MaLR 354 448 -57 7 938 422 195 0 12 chr4 46371058 46371141 -109258979 + PB1D10 SINE Alu 31 112 -5 7 938 1178 76 0 0 chr4 46371283 46371428 -109258692 + B1_Mm SINE Alu 1 145 -2 7 938 487 282 107 0 chr4 46371461 46371723 -109258397 + L1MD2 LINE L1 2225 2514 -3632 7 938 216 163 0 0 chr4 46372000 46372043 -109258077 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 938 345 268 23 63 chr4 46372062 46372237 -109257883 + L1MD2 LINE L1 3500 3667 -2479 7 938 595 254 15 8 chr4 46372257 46372388 -109257732 + RSINE1 SINE B4 3 134 -31 7 938 421 315 12 23 chr4 46372451 46372623 -109257497 + L1MD2 LINE L1 3674 3843 -2303 7 938 495 244 63 17 chr4 46372848 46373023 -109257097 + L1MD2 LINE L1 3840 4022 -2124 7 938 415 228 200 16 chr4 46373086 46373211 -109256909 + B1F1 SINE Alu 1 148 -1 7 938 419 231 13 0 chr4 46373229 46373307 -109256813 + B4A SINE B4 4 82 -210 7 938 219 69 0 0 chr4 46373359 46373388 -109256732 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 7 938 23 0 0 0 chr4 46373439 46373462 -109256658 + AT_rich Low_complexity Low_complexity 1 23 0 7 938 615 246 48 21 chr4 46373464 46373609 -109256511 + B1F2 SINE Alu 1 149 0 7 938 926 143 0 7 chr4 46373614 46373755 -109256365 + B1_Mus2 SINE Alu 1 140 -7 7 938 664 194 89 109 chr4 46373765 46373967 -109256153 + B3A SINE B2 1 198 0 7 938 911 276 69 29 chr4 46373977 46374451 -109255669 + L1MD2 LINE L1 5188 5683 -676 7 938 1171 84 12 24 chr4 46374463 46374622 -109255498 + B2_Mm2 SINE B2 1 161 -34 7 938 261 0 0 0 chr4 46374622 46374651 -109255469 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 7 938 361 130 358 9 chr4 46374729 46374838 -109255282 + B1_Mm SINE Alu 1 147 0 7 938 586 290 53 0 chr4 46374864 46375033 -109255087 + B3A SINE B2 3 180 -18 7 938 383 261 61 0 chr4 46375092 46375263 -109254857 + L1MD2 LINE L1 5745 5928 -431 7 938 228 67 0 0 chr4 46375263 46375293 -109254827 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 7 938 422 200 94 10 chr4 46375293 46375389 -109254731 - PB1D10 SINE Alu -13 104 1 7 938 709 262 9 110 chr4 46375404 46375623 -109254497 - B3A SINE B2 0 198 2 7 938 321 227 0 129 chr4 46375643 46375744 -109254376 + MT2B LTR ERVL 153 240 -361 7 938 678 182 43 28 chr4 46375664 46375805 -109254315 + B1_Mur4 SINE Alu 7 149 -1 7 938 747 146 242 60 chr4 46375901 46376083 -109254037 + B3 SINE B2 2 216 0 7 938 1226 54 0 0 chr4 46376107 46376255 -109253865 + B1_Mus1 SINE Alu 1 148 0 7 938 350 191 14 14 chr4 46376667 46376736 -109253384 + ID4 SINE ID 11 79 -4 7 938 702 171 0 19 chr4 46376749 46376904 -109253216 + GA-rich Low_complexity Low_complexity 2 153 0 7 938 475 192 319 47 chr4 46376987 46377156 -109252964 + B3 SINE B2 1 215 -1 7 938 943 171 119 0 chr4 46377312 46377505 -109252615 + B3 SINE B2 1 216 0 7 938 1129 251 112 34 chr4 46377550 46377988 -109252132 - RMER5 LTR ERV1 -17 517 46 7 938 858 303 53 20 chr4 46378112 46378358 -109251762 + B4 SINE B4 2 255 -37 7 938 307 288 110 29 chr4 46378777 46378913 -109251207 - MER20 DNA MER1_type -30 189 43 7 938 418 281 26 17 chr4 46379034 46379150 -109250970 + PB1D10 SINE Alu 1 117 0 7 938 1009 97 0 43 chr4 46379171 46379311 -109250809 + B1_Mur4 SINE Alu 1 134 -16 7 938 647 188 6 0 chr4 46379877 46380053 -109250067 + CT-rich Low_complexity Low_complexity 2 178 0 7 938 718 142 30 30 chr4 46380053 46380184 -109249936 - B1_Mur2 SINE Alu -18 131 1 7 938 189 0 0 0 chr4 46380874 46380895 -109249225 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 938 417 86 0 0 chr4 46380891 46380949 -109249171 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 7 938 377 258 38 34 chr4 46381552 46381608 -109248512 + ID_B1 SINE B4 48 187 -105 7 938 393 133 66 13 chr4 46381608 46381684 -109248436 + B1_Mus1 SINE Alu 18 97 -51 7 938 255 260 24 61 chr4 46381753 46381835 -109248285 + B4A SINE B4 4 82 -210 7 938 1009 187 48 0 chr4 46381762 46381949 -109248171 + B3 SINE B2 9 204 -12 7 938 325 0 0 43 chr4 46381955 46382002 -109248118 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 938 834 234 2 9 chr4 46382013 46382198 -109247922 + B3A SINE B2 6 182 -34 7 938 1388 155 14 9 chr4 46382473 46382695 -109247425 - URR1B DNA MER1_type -2 223 1 7 938 326 364 26 41 chr4 46382701 46382896 -109247224 - L1M5 LINE L1 -506 5667 5476 7 938 180 0 0 0 chr4 46383264 46383284 -109246836 + (G)n Simple_repeat Simple_repeat 1 20 0 7 938 267 253 165 0 chr4 46383613 46383704 -109246416 - L3 LINE CR1 -75 4414 4309 7 938 234 91 0 0 chr4 46383719 46383752 -109246368 + (TAA)n Simple_repeat Simple_repeat 2 34 0 7 938 277 43 0 61 chr4 46383918 46383967 -109246153 + (CCCCCA)n Simple_repeat Simple_repeat 3 48 0 7 938 472 157 124 29 chr4 46384637 46384742 -109245378 - B3 SINE B2 -4 212 98 7 938 359 253 0 0 chr4 46384960 46385035 -109245085 - PB1D10 SINE Alu -1 116 42 7 938 1047 39 0 8 chr4 46385080 46385211 -109244909 + B1_Mus2 SINE Alu 9 138 -9 7 938 333 0 0 0 chr4 46385211 46385248 -109244872 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 938 236 256 60 12 chr4 46385253 46385336 -109244784 - L1M1 LINE L1 -398 5902 5816 7 938 208 175 16 16 chr4 46385411 46385457 -109244663 + T-rich Low_complexity Low_complexity 22 67 0 7 938 1127 67 152 0 chr4 46385457 46385622 -109244498 - B2_Mm2 SINE B2 -3 192 3 7 938 208 175 16 16 chr4 46385622 46385639 -109244481 + T-rich Low_complexity Low_complexity 5 21 0 7 938 408 237 263 0 chr4 46385639 46385753 -109244367 - ID_B1 SINE B4 0 224 81 7 938 661 204 36 21 chr4 46386667 46386807 -109243313 + B1_Mur1 SINE Alu 7 148 -1 7 938 25 31 0 0 chr4 46387104 46387136 -109242984 + AT_rich Low_complexity Low_complexity 1 32 0 7 938 354 339 78 26 chr4 46387176 46387367 -109242753 - B4A SINE B4 -65 227 27 7 938 787 256 51 0 chr4 46387417 46387612 -109242508 + B3 SINE B2 12 216 0 7 938 256 269 51 0 chr4 46388654 46388732 -109241388 + ID2 SINE ID 2 83 0 7 938 1889 152 70 62 chr4 46388829 46388921 -109241199 + MTC LTR MaLR 6 93 -328 7 938 1161 81 0 0 chr4 46388921 46389069 -109241051 + B1_Mus1 SINE Alu 1 148 0 7 938 1889 160 71 62 chr4 46389069 46389377 -109240743 + MTC LTR MaLR 94 392 -29 7 938 1484 72 0 30 chr4 46389481 46389682 -109240438 + B2_Mm2 SINE B2 1 195 0 7 938 285 345 26 68 chr4 46389745 46389935 -109240185 - MER58C DNA MER1_type 0 215 34 7 938 231 222 0 0 chr4 46389935 46389989 -109240131 + RSINE1 SINE B4 2 55 -110 7 938 343 208 39 13 chr4 46390050 46390128 -109239992 + U3 snRNA snRNA 137 216 -1 7 938 806 313 144 13 chr4 46390191 46390663 -109239457 + Lx8 LINE L1 6901 7434 -39 7 938 873 218 57 0 chr4 46390711 46390904 -109239216 + B3 SINE B2 1 204 -12 7 938 668 172 17 0 chr4 46391180 46391296 -109238824 + B1_Mur2 SINE Alu 32 149 0 7 938 218 32 0 31 chr4 46391445 46391477 -109238643 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 7 938 559 139 277 0 chr4 46391485 46391586 -109238534 - B1_Mus2 SINE Alu -12 135 7 7 938 1231 91 5 43 chr4 46391626 46391810 -109238310 + B2_Mm2 SINE B2 1 177 -18 7 938 279 0 0 0 chr4 46392041 46392072 -109238048 + (A)n Simple_repeat Simple_repeat 1 31 0 7 938 433 190 80 0 chr4 46392477 46392577 -109237543 + PB1D10 SINE Alu 1 108 -9 7 938 25 51 0 0 chr4 46392774 46392813 -109237307 + AT_rich Low_complexity Low_complexity 1 39 0 7 938 2131 96 23 0 chr4 46393439 46393741 -109236379 + ORR1A2 LTR MaLR 18 326 -1 8 938 312 218 11 84 chr4 46393875 46393970 -109236150 + L2a LINE L2 3293 3380 -46 8 938 717 278 31 10 chr4 46394436 46394629 -109235491 + B3A SINE B2 2 198 0 8 938 398 237 75 17 chr4 46396083 46396203 -109233917 + MLT1E3 LTR MaLR 308 463 -191 8 938 1426 43 20 61 chr4 46396351 46396548 -109233572 + B2_Mm2 SINE B2 3 191 -4 8 938 262 344 86 12 chr4 46396976 46397138 -109232982 + L2a LINE L2 3219 3392 -34 8 938 1414 242 89 11 chr4 46397166 46397513 -109232607 + ORR1D1 LTR MaLR 1 374 0 8 938 1476 90 4 35 chr4 46397523 46397754 -109232366 + Lx LINE L1 6426 6649 -5 8 938 984 235 14 18 chr4 46398100 46398317 -109231803 + ID_B1 SINE B4 9 224 0 8 938 187 383 0 0 chr4 46399272 46399332 -109230788 + L2b LINE L2 3296 3355 -20 8 938 187 337 19 68 chr4 46399299 46399485 -109230635 - MIR3 SINE MIR -1 261 87 8 939 451 264 45 60 chr4 46399895 46400028 -109230092 - MER58A DNA MER1_type -12 212 82 8 939 284 311 0 46 chr4 46400738 46400846 -109229274 - PB1D10 SINE Alu -10 107 5 8 939 251 257 0 51 chr4 46401111 46401132 -109228988 + MT2B LTR ERVL 176 244 -352 8 939 292 154 39 0 chr4 46401132 46401184 -109228936 + PB1D9 SINE Alu 37 90 -30 8 939 383 125 16 0 chr4 46401325 46401389 -109228731 + B1_Mus2 SINE Alu 71 135 -12 8 939 491 82 0 14 chr4 46401440 46401514 -109228606 + (TA)n Simple_repeat Simple_repeat 1 73 0 8 939 262 256 150 0 chr4 46402653 46402786 -109227334 - RSINE1 SINE B4 -10 155 3 8 939 21 0 0 0 chr4 46403186 46403207 -109226913 + AT_rich Low_complexity Low_complexity 1 21 0 8 939 834 238 12 0 chr4 46403681 46403841 -109226279 + B3 SINE B2 1 162 -54 8 939 469 161 35 0 chr4 46403846 46403933 -109226187 + PB1D9 SINE Alu 1 90 -30 8 939 528 287 38 13 chr4 46404271 46404430 -109225690 + B4A SINE B4 126 288 -4 8 939 496 238 172 16 chr4 46404489 46404681 -109225439 + ID_B1 SINE B4 3 224 0 8 939 642 176 234 7 chr4 46404698 46404852 -109225268 + B3 SINE B2 20 208 -8 8 939 1007 61 128 94 chr4 46404880 46405060 -109225060 + B2_Mm2 SINE B2 2 187 -8 8 939 227 337 99 0 chr4 46405084 46405185 -109224935 + MER5B DNA MER1_type 50 160 -18 8 939 1172 94 0 0 chr4 46405489 46405649 -109224471 + B2_Mm2 SINE B2 1 160 -35 8 939 747 62 0 0 chr4 46405651 46405748 -109224372 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 8 939 430 282 48 0 chr4 46405849 46405952 -109224168 + B1_Mur1 SINE Alu 2 109 -40 8 939 296 259 0 105 chr4 46405992 46406087 -109224033 + B3A SINE B2 38 122 -76 8 939 785 109 283 0 chr4 46406491 46406629 -109223491 + B2_Mm1t SINE B2 3 179 -14 8 939 319 143 349 30 chr4 46406671 46406780 -109223340 + B2_Mm2 SINE B2 47 188 -7 8 939 333 0 0 0 chr4 46407246 46407283 -109222837 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 939 562 243 119 22 chr4 46407794 46407979 -109222141 - B3 SINE B2 -13 203 1 8 939 661 153 80 44 chr4 46408009 46408146 -109221974 - B1_Mur2 SINE Alu -7 142 1 8 939 318 148 0 0 chr4 46408180 46408234 -109221886 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 939 355 232 0 29 chr4 46408238 46408329 -109221791 - RLTR21 LTR ERVK -318 1254 1167 8 939 397 287 18 18 chr4 46408329 46408439 -109221681 + B3A SINE B2 3 112 -86 8 939 276 336 55 62 chr4 46409967 46410113 -109220007 + MIRm SINE MIR 36 180 -96 8 939 369 62 15 30 chr4 46410147 46410214 -109219906 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 939 194 150 25 0 chr4 46410237 46410277 -109219843 + GA-rich Low_complexity Low_complexity 1 41 0 8 939 754 255 113 17 chr4 46410294 46410533 -109219587 + B4 SINE B4 6 267 -25 8 939 351 0 0 0 chr4 46410541 46410580 -109219540 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 939 620 207 116 7 chr4 46410681 46410827 -109219293 + RSINE1 SINE B4 3 164 -1 8 939 900 143 0 0 chr4 46410879 46411012 -109219108 + B1_Mur3 SINE Alu 9 141 -8 8 939 438 269 81 15 chr4 46411077 46411185 -109218935 + PB1D7 SINE Alu 5 118 -31 8 939 673 238 7 20 chr4 46411185 46411335 -109218785 - B1_Mur1 SINE Alu -1 148 1 8 939 431 269 81 15 chr4 46411335 46411362 -109218758 + B1F SINE Alu 119 149 0 8 939 387 0 0 0 chr4 46411411 46411454 -109218666 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 939 668 143 17 26 chr4 46411463 46411578 -109218542 - B1_Mus2 SINE Alu -33 114 1 8 939 352 243 23 135 chr4 46411578 46411608 -109218512 - MT2B LTR ERVL -447 154 140 8 939 385 209 11 34 chr4 46411650 46411739 -109218381 - PB1D9 SINE Alu -1 119 33 8 939 531 283 65 0 chr4 46411804 46411942 -109218178 - RSINE1 SINE B4 -13 152 6 8 939 462 229 0 40 chr4 46412005 46412105 -109218015 + PB1D7 SINE Alu 5 100 -20 8 939 357 225 48 22 chr4 46412292 46412400 -109217720 + MIR SINE MIR 67 173 -95 8 939 468 96 82 0 chr4 46412465 46412538 -109217582 - B2_Mm2 SINE B2 -115 80 2 8 939 579 268 28 84 chr4 46412559 46412738 -109217382 - B3A SINE B2 -29 169 1 8 939 481 211 0 40 chr4 46412743 46412842 -109217278 - PB1D7 SINE Alu -20 100 6 8 939 1175 225 78 0 chr4 46412870 46413128 -109216992 - Lx6 LINE L1 0 7460 7183 8 939 1129 172 9 33 chr4 46413760 46413971 -109216149 - B3 SINE B2 -7 209 4 8 939 494 182 165 8 chr4 46414080 46414207 -109215913 - B1_Mur1 SINE Alu 0 149 3 8 939 1017 123 14 0 chr4 46414253 46414399 -109215721 - B1_Mus1 SINE Alu 0 148 1 8 939 23 0 0 0 chr4 46414485 46414508 -109215612 + AT_rich Low_complexity Low_complexity 1 23 0 8 939 418 105 176 12 chr4 46414518 46414623 -109215497 - B2_Mm2 SINE B2 -9 186 47 8 939 215 171 24 0 chr4 46414587 46414628 -109215492 - B4 SINE B4 -210 82 41 8 939 1326 79 23 0 chr4 46414651 46414828 -109215292 - B2_Mm2 SINE B2 -14 181 1 8 939 907 152 7 0 chr4 46415134 46415272 -109214848 + B1_Mus2 SINE Alu 1 139 -8 8 939 248 278 140 32 chr4 46415352 46415445 -109214675 - PB1D9 SINE Alu -13 107 5 8 939 1471 45 0 11 chr4 46415458 46415636 -109214484 - B2_Mm2 SINE B2 -18 177 2 8 939 631 104 19 0 chr4 46415751 46415857 -109214263 + (TC)n Simple_repeat Simple_repeat 1 108 0 8 939 474 18 0 0 chr4 46415861 46415916 -109214204 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 8 939 414 222 0 0 chr4 46415923 46415995 -109214125 - ID4_ SINE ID -10 73 2 8 939 746 270 153 24 chr4 46415998 46416377 -109213743 + Charlie4a DNA MER1_type 48 475 -33 8 939 194 262 224 12 chr4 46417309 46417394 -109212726 + MIR SINE MIR 43 145 -63 8 939 456 271 7 135 chr4 46418111 46418205 -109211915 + ID_B1 SINE B4 88 178 -46 8 939 1125 50 50 0 chr4 46418205 46418344 -109211776 + B1_Mm SINE Alu 2 147 0 8 939 456 271 7 135 chr4 46418344 46418390 -109211730 + ID_B1 SINE B4 179 210 -14 8 939 546 81 0 23 chr4 46418503 46418591 -109211529 + L1_Mus3 LINE L1 6547 6632 -6 8 939 438 300 9 0 chr4 46418710 46418820 -109211300 - PB1D10 SINE Alu 0 117 7 8 939 192 77 0 0 chr4 46419229 46419255 -109210865 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 939 661 209 54 0 chr4 46419255 46419384 -109210736 - B1_Mur2 SINE Alu -12 137 2 8 939 504 257 168 46 chr4 46419644 46419840 -109210280 - ID_B1 SINE B4 -3 221 2 8 939 341 188 62 12 chr4 46420470 46420539 -109209581 + PB1D10 SINE Alu 32 102 -15 8 939 1202 28 28 0 chr4 46420539 46420682 -109209438 + B1_Mus1 SINE Alu 1 147 -1 8 939 341 188 62 12 chr4 46420682 46420693 -109209427 + PB1D10 SINE Alu 103 116 -1 8 939 186 0 28 56 chr4 46420694 46420730 -109209390 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 939 949 126 0 27 chr4 46420784 46420931 -109209189 - B1_Mus1 SINE Alu -1 147 5 8 939 615 152 38 0 chr4 46420958 46421063 -109209057 + PB1D9 SINE Alu 11 119 -1 8 939 238 226 0 16 chr4 46421064 46421127 -109208993 + A-rich Low_complexity Low_complexity 1 62 0 8 939 226 104 55 127 chr4 46421136 46421191 -109208929 + B1_Mus2 SINE Alu 81 131 -16 8 939 848 108 6 0 chr4 46421191 46421348 -109208772 + (GA)n Simple_repeat Simple_repeat 1 158 0 8 939 418 295 200 9 chr4 46421605 46421920 -109208200 - L2 LINE L2 -550 2869 2495 8 939 470 269 7 56 chr4 46422206 46422348 -109207772 - MER45A DNA Tip100 -4 174 40 8 939 219 313 136 32 chr4 46422348 46422503 -109207617 - MIRb SINE MIR -87 181 11 8 939 26 0 0 0 chr4 46422789 46422815 -109207305 + AT_rich Low_complexity Low_complexity 1 26 0 8 939 224 244 121 136 chr4 46422818 46422831 -109207289 - B4 SINE B4 0 292 280 8 939 830 7 28 41 chr4 46422831 46422976 -109207144 + (GGAGA)n Simple_repeat Simple_repeat 2 144 0 8 939 543 204 74 71 chr4 46422976 46423076 -109207044 - RSINE1 SINE B4 -13 279 3 8 939 364 179 129 12 chr4 46423076 46423161 -109206959 - PB1D10 SINE Alu -11 106 12 8 939 220 330 93 25 chr4 46423263 46423381 -109206739 + MIRb SINE MIR 32 157 -111 8 939 264 291 6 130 chr4 46423485 46423647 -109206473 - MT2B LTR ERVL -285 316 175 8 939 715 183 0 8 chr4 46423525 46423657 -109206463 - B1_Mur1 SINE Alu -18 131 1 8 939 828 180 0 26 chr4 46424288 46424442 -109205678 - B1_Mur4 SINE Alu 0 150 1 8 939 823 239 84 10 chr4 46424829 46425032 -109205088 + ID_B1 SINE B4 2 219 -5 8 939 222 279 176 0 chr4 46425152 46425220 -109204900 - ID4_ SINE ID -1 82 3 9 939 333 0 0 0 chr4 46425226 46425263 -109204857 + (T)n Simple_repeat Simple_repeat 1 37 0 9 939 253 304 150 60 chr4 46425299 46425312 -109204808 - ID_B1 SINE B4 0 224 82 9 939 287 273 59 68 chr4 46425312 46425430 -109204690 - B1F SINE Alu -32 117 1 9 939 1139 117 0 6 chr4 46425455 46425636 -109204484 + (TCC)n Simple_repeat Simple_repeat 1 180 0 9 939 980 151 6 0 chr4 46425648 46425827 -109204293 + CT-rich Low_complexity Low_complexity 1 180 0 9 939 386 165 125 67 chr4 46425836 46425940 -109204180 - PB1D9 SINE Alu 0 120 11 9 939 304 343 14 56 chr4 46426481 46426623 -109203497 - MIRc SINE MIR -113 155 20 9 939 327 338 53 40 chr4 46427085 46427236 -109202884 - MIR SINE MIR 0 262 110 9 939 846 281 41 121 chr4 46427275 46427688 -109202432 - MTC LTR MaLR -19 402 23 9 939 267 324 19 51 chr4 46427931 46427950 -109202170 + ID_B1 SINE B4 73 223 -1 9 939 563 252 0 15 chr4 46427950 46428087 -109202033 + B1_Mur1 SINE Alu 14 148 -1 9 939 325 216 27 0 chr4 46428105 46428179 -109201941 + ID4_ SINE ID 1 76 -7 9 939 841 242 43 14 chr4 46428226 46428436 -109201684 + B3 SINE B2 1 216 0 9 939 992 79 58 0 chr4 46428443 46428582 -109201538 + B1_Mus1 SINE Alu 2 148 0 9 939 247 286 35 35 chr4 46428739 46428826 -109201294 + MIRb SINE MIR 147 233 -35 9 939 247 290 92 53 chr4 46428922 46429053 -109201067 - MIR3 SINE MIR -58 150 15 9 939 249 301 23 46 chr4 46429283 46429370 -109200750 + ID_B1 SINE B4 140 224 0 9 939 682 218 0 46 chr4 46429369 46429499 -109200621 + B1_Mus2 SINE Alu 1 124 -23 9 939 454 245 0 113 chr4 46429512 46429636 -109200484 + PB1D9 SINE Alu 3 112 -8 9 939 26 30 0 0 chr4 46429636 46429669 -109200451 + AT_rich Low_complexity Low_complexity 1 33 0 9 939 418 227 0 0 chr4 46429796 46429871 -109200249 + ID4_ SINE ID 2 76 -7 9 939 218 169 0 78 chr4 46429888 46429952 -109200168 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 9 939 257 252 133 19 chr4 46429959 46430064 -109200056 - PB1D10 SINE Alu 0 117 1 9 939 342 255 110 90 chr4 46431137 46431292 -109198828 + ID_B1 SINE B4 67 224 0 9 939 253 187 27 0 chr4 46431419 46431494 -109198626 + CT-rich Low_complexity Low_complexity 1 77 0 9 939 317 318 106 23 chr4 46431494 46431626 -109198494 - B1F SINE Alu -5 144 2 9 939 826 222 0 41 chr4 46431663 46431832 -109198288 - RSINE1 SINE B4 -1 164 3 9 939 211 175 0 48 chr4 46432132 46432174 -109197946 + polypyrimidine Low_complexity Low_complexity 1 40 0 9 939 591 261 14 42 chr4 46432209 46432353 -109197767 - RSINE1 SINE B4 -14 151 12 9 939 447 162 38 0 chr4 46432364 46432444 -109197676 - B1F SINE Alu 0 149 67 9 939 401 253 23 0 chr4 46432446 46432533 -109197587 - ID_B1 SINE B4 -26 198 110 9 939 217 70 0 65 chr4 46432685 46432731 -109197389 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 939 247 214 22 18 chr4 46433242 46433312 -109196808 + B1F SINE Alu 1 71 -78 9 939 304 323 10 0 chr4 46433366 46433462 -109196658 + BC1_Mm scRNA scRNA 8 104 -48 9 939 210 297 21 42 chr4 46433886 46433981 -109196139 + PB1D10 SINE Alu 24 116 -1 9 939 820 134 0 0 chr4 46434197 46434316 -109195804 + B1_Mus1 SINE Alu 30 148 0 9 939 732 103 0 0 chr4 46434352 46434459 -109195661 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 9 939 248 49 0 47 chr4 46434479 46434522 -109195598 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 939 606 319 0 0 chr4 46434537 46434672 -109195448 + ID_B1 SINE B4 81 215 -9 9 939 314 364 25 31 chr4 46434672 46434687 -109195433 - YREP_Mm Unknown Unknown -1487 274 168 9 939 685 152 87 8 chr4 46434867 46434993 -109195127 + B1_Mur2 SINE Alu 3 138 -11 9 939 319 271 50 30 chr4 46435095 46435194 -109194926 + PB1D7 SINE Alu 3 103 -17 9 939 214 294 44 0 chr4 46435642 46435710 -109194410 - L2c LINE L2 -50 3337 3267 9 939 260 302 37 28 chr4 46435845 46435954 -109194166 + PB1D10 SINE Alu 2 111 -6 9 939 866 129 23 8 chr4 46435963 46436096 -109194024 + B3 SINE B2 7 141 -75 9 939 191 32 65 0 chr4 46436641 46436672 -109193448 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 9 939 1205 34 7 7 chr4 46436673 46436820 -109193300 - B1_Mm SINE Alu 0 147 1 9 939 180 0 0 0 chr4 46436893 46436913 -109193207 + (T)n Simple_repeat Simple_repeat 1 20 0 9 939 343 254 36 129 chr4 46437034 46437174 -109192946 + B1F SINE Alu 1 127 -22 9 939 190 52 15 108 chr4 46437180 46437245 -109192875 + T-rich Low_complexity Low_complexity 3 61 0 9 939 1210 48 14 0 chr4 46437246 46437391 -109192729 - B1_Mus2 SINE Alu 0 147 1 9 939 37 0 0 21 chr4 46437397 46437411 -109192709 + AT_rich Low_complexity Low_complexity 1 14 0 9 939 1344 80 11 0 chr4 46437411 46437587 -109192533 - B2_Mm1t SINE B2 -14 179 2 9 939 37 0 0 21 chr4 46437587 46437620 -109192500 + AT_rich Low_complexity Low_complexity 1 33 0 9 939 589 223 16 0 chr4 46437834 46437955 -109192165 + RSINE1 SINE B4 3 125 -40 9 939 215 61 30 0 chr4 46437955 46437988 -109192132 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 939 594 253 113 0 chr4 46438034 46438220 -109191900 + B3 SINE B2 2 208 -8 9 939 21 0 0 0 chr4 46438232 46438253 -109191867 + AT_rich Low_complexity Low_complexity 1 21 0 9 939 256 292 15 0 chr4 46438318 46438383 -109191737 + ID4 SINE ID 12 77 -6 9 939 641 189 0 6 chr4 46438383 46438548 -109191572 + (CA)n Simple_repeat Simple_repeat 1 164 0 9 939 695 210 4 0 chr4 46438573 46438842 -109191278 + (CA)n Simple_repeat Simple_repeat 1 270 0 9 939 200 61 61 0 chr4 46438926 46438959 -109191161 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 9 939 959 262 5 19 chr4 46438966 46439176 -109190944 + B3 SINE B2 9 215 -1 9 939 844 203 0 7 chr4 46439282 46439431 -109190689 - B1_Mur4 SINE Alu 0 150 3 9 939 1089 89 0 20 chr4 46439454 46439603 -109190517 - B1_Mus1 SINE Alu 0 148 3 9 939 435 214 15 120 chr4 46439492 46439625 -109190495 - MT2B LTR ERVL -337 264 146 9 939 417 335 94 72 chr4 46439640 46440000 -109190120 - ORR1D2 LTR MaLR -2 368 1 9 939 336 83 0 0 chr4 46440459 46440507 -109189613 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 939 535 122 20 10 chr4 46440869 46440968 -109189152 + GA-rich Low_complexity Low_complexity 4 103 0 9 939 797 154 17 11 chr4 46440980 46441157 -109188963 + GA-rich Low_complexity Low_complexity 1 178 0 9 939 1224 49 0 0 chr4 46441190 46441333 -109188787 + B1_Mm SINE Alu 2 144 -3 9 939 459 0 0 0 chr4 46441333 46441384 -109188736 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 9 939 1371 62 0 0 chr4 46441386 46441564 -109188556 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 9 939 440 0 36 0 chr4 46441564 46441619 -109188501 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 9 939 408 186 19 102 chr4 46441625 46441733 -109188387 + PB1D9 SINE Alu 22 120 0 9 939 200 35 35 0 chr4 46442521 46442550 -109187570 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 939 470 279 22 7 chr4 46442559 46442696 -109187424 + B1F1 SINE Alu 3 141 -8 9 939 319 138 0 65 chr4 46442730 46442792 -109187328 + HAL1-3A_ME LINE L1 1955 2012 -846 9 939 234 289 0 0 chr4 46442798 46442902 -109187218 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 939 472 242 78 31 chr4 46442951 46443079 -109187041 - B3 SINE B2 -2 214 81 9 939 368 258 34 0 chr4 46443264 46443353 -109186767 + B4A SINE B4 2 93 -199 9 939 1186 74 0 0 chr4 46443358 46443506 -109186614 + B1_Mus1 SINE Alu 1 148 0 9 939 408 231 18 53 chr4 46443598 46443712 -109186408 - RMER15 LTR ERVL -13 562 453 9 939 236 217 72 0 chr4 46443712 46443781 -109186339 + L1MB5 LINE L1 6027 6100 -74 9 939 244 226 62 46 chr4 46443915 46443980 -109186140 + B4A SINE B4 70 135 -157 9 939 287 245 65 19 chr4 46443933 46444041 -109186079 + PB1D7 SINE Alu 7 119 -1 9 939 357 222 54 32 chr4 46444056 46444149 -109185971 + PB1 SINE Alu 29 123 -4 9 939 899 118 15 0 chr4 46444171 46444307 -109185813 + B1_Mur4 SINE Alu 6 143 -7 9 939 539 204 41 0 chr4 46444373 46444471 -109185649 + ID_B1 SINE B4 110 211 -13 9 939 587 267 40 14 chr4 46444485 46444633 -109185487 + RSINE1 SINE B4 14 165 0 9 939 182 37 0 36 chr4 46444633 46444661 -109185459 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 939 753 216 15 0 chr4 46444693 46444827 -109185293 + B1_Mur1 SINE Alu 14 149 0 9 939 270 275 37 12 chr4 46445006 46445017 -109185103 + B1_Mur1 SINE Alu 64 144 -3 9 939 370 206 0 0 chr4 46445017 46445085 -109185035 + ID_B1 SINE B4 153 220 -4 9 939 269 238 0 121 chr4 46445087 46445178 -109184942 + ID4_ SINE ID 4 83 0 9 939 600 14 0 0 chr4 46445200 46445269 -109184851 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 9 939 422 240 198 32 chr4 46445913 46446068 -109184052 + B3A SINE B2 8 178 -38 9 939 1155 75 0 13 chr4 46446105 46446254 -109183866 + B1_Mus2 SINE Alu 1 147 0 9 939 269 220 17 0 chr4 46446277 46446336 -109183784 - HAL1 LINE L1 -847 1660 1601 9 939 653 210 22 47 chr4 46446414 46446707 -109183413 + RMER10A LTR ERVL 111 440 -2 9 939 585 253 214 25 chr4 46447080 46447397 -109182723 + MTE2a LTR MaLR 3 379 0 9 939 473 181 11 43 chr4 46447580 46447765 -109182355 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 939 640 182 135 0 chr4 46447820 46447946 -109182174 + B1_Mur2 SINE Alu 6 148 -1 1 939 996 198 16 0 chr4 46447969 46448161 -109181959 + B3 SINE B2 4 198 -18 1 939 225 341 71 24 chr4 46448359 46448485 -109181635 - HAL1 LINE L1 -1837 670 539 1 939 257 278 22 0 chr4 46448478 46448568 -109181552 - HAL1 LINE L1 -1229 1278 1187 9 939 212 281 58 0 chr4 46448585 46448724 -109181396 + (TA)n Simple_repeat Simple_repeat 1 147 0 1 939 747 62 0 0 chr4 46448944 46449041 -109181079 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 1 939 450 0 0 0 chr4 46449041 46449091 -109181029 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 939 199 29 56 28 chr4 46449090 46449126 -109180994 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 1 939 377 109 0 86 chr4 46449129 46449199 -109180921 - B1_Mm SINE Alu -2 145 82 1 939 342 0 0 0 chr4 46449220 46449258 -109180862 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 939 946 66 0 0 chr4 46449258 46449379 -109180741 - B1_Mus1 SINE Alu -9 139 19 1 939 357 180 0 0 chr4 46449675 46449764 -109180356 + (TCTG)n Simple_repeat Simple_repeat 4 92 0 1 939 457 188 24 0 chr4 46450020 46450105 -109180015 - B1F SINE Alu -40 109 23 1 939 213 39 0 0 chr4 46450151 46450177 -109179943 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 939 298 222 58 126 chr4 46450549 46450652 -109179468 + PB1D7 SINE Alu 18 113 -7 1 939 1034 128 193 6 chr4 46450664 46450845 -109179275 + B3 SINE B2 2 216 0 1 939 435 266 133 44 chr4 46450866 46451047 -109179073 + B3A SINE B2 1 197 -1 1 939 354 45 0 0 chr4 46451063 46451107 -109179013 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 939 360 43 0 0 chr4 46451151 46451197 -109178923 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 939 531 181 18 54 chr4 46451209 46451269 -109178851 + B1_Mur2 SINE Alu 1 58 -91 1 939 1858 144 44 81 chr4 46451269 46451678 -109178442 + RMER10B LTR ERVL 1 394 -4 1 939 531 202 30 54 chr4 46451678 46451764 -109178356 + B1_Mur2 SINE Alu 59 145 -4 1 939 402 229 125 0 chr4 46451775 46451871 -109178249 + ID_B1 SINE B4 86 193 -31 1 939 1504 43 16 11 chr4 46451988 46452174 -109177946 - B2_Mm2 SINE B2 -7 188 2 1 939 617 311 118 39 chr4 46452183 46452763 -109177357 - L1ME1 LINE L1 -1 6177 5537 1 939 640 244 0 0 chr4 46453017 46453148 -109176972 - ID_B1 SINE B4 -6 218 88 1 939 195 129 0 0 chr4 46453312 46453343 -109176777 + (T)n Simple_repeat Simple_repeat 1 31 0 1 939 247 368 37 22 chr4 46453349 46453485 -109176635 - Lx8 LINE L1 -176 7297 7160 1 939 1323 98 0 68 chr4 46453509 46453555 -109176565 - B2_Mm2 SINE B2 0 195 163 1 939 180 0 0 0 chr4 46453555 46453575 -109176545 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 939 1323 98 0 68 chr4 46453575 46453735 -109176385 - B2_Mm2 SINE B2 -33 162 3 1 939 609 187 0 0 chr4 46453735 46453842 -109176278 - PB1D9 SINE Alu -11 109 3 1 939 287 164 73 15 chr4 46453846 46453914 -109176206 - B1F SINE Alu -73 76 5 1 939 433 258 75 0 chr4 46453925 46454084 -109176036 - L1ME1 LINE L1 -961 5185 5015 1 939 221 333 0 40 chr4 46454084 46454159 -109175961 - B1F SINE Alu -10 139 68 1 939 261 319 14 0 chr4 46454105 46454174 -109175946 - ID_B1 SINE B4 -25 199 130 1 939 233 141 62 0 chr4 46454414 46454449 -109175671 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 939 1151 76 7 0 chr4 46454449 46454594 -109175526 - B1_Mus2 SINE Alu -1 146 1 1 939 233 141 62 0 chr4 46454594 46454622 -109175498 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 939 231 128 213 0 chr4 46454623 46454670 -109175450 - B1_Mur4 SINE Alu -2 148 92 1 939 949 114 13 6 chr4 46454855 46455014 -109175106 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 1 939 895 201 43 29 chr4 46455015 46455225 -109174895 - B3 SINE B2 -3 213 1 1 939 506 252 30 30 chr4 46455499 46455630 -109174490 - ID_B1 SINE B4 -92 132 2 1 939 369 191 59 0 chr4 46455650 46455718 -109174402 - ID4 SINE ID -2 81 10 1 939 339 96 0 0 chr4 46455728 46455780 -109174340 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 939 360 118 0 0 chr4 46455838 46455889 -109174231 - B1_Mus2 SINE Alu -11 136 86 1 939 733 203 14 27 chr4 46455898 46456045 -109174075 - B1_Mur1 SINE Alu 0 149 5 1 939 1292 107 11 0 chr4 46456181 46456358 -109173762 + B2_Mm1t SINE B2 1 179 -14 1 939 420 52 0 0 chr4 46456371 46456429 -109173691 - PB1D9 SINE Alu -62 58 1 1 939 1558 63 0 0 chr4 46456444 46456634 -109173486 + B2_Mm1t SINE B2 2 191 -2 1 939 545 311 53 0 chr4 46456723 46456874 -109173246 + RSINE1 SINE B4 1 159 -6 1 939 1231 48 0 0 chr4 46456984 46457131 -109172989 + B1_Mus1 SINE Alu 2 148 0 1 939 255 61 0 0 chr4 46457140 46457173 -109172947 + (A)n Simple_repeat Simple_repeat 1 33 0 1 939 1201 110 15 59 chr4 46457382 46457585 -109172535 - B2_Mm2 SINE B2 0 195 2 1 939 1230 48 0 20 chr4 46457610 46457760 -109172360 - B1_Mus2 SINE Alu 0 147 1 1 939 21 0 0 0 chr4 46457768 46457789 -109172331 + AT_rich Low_complexity Low_complexity 1 21 0 1 939 472 290 22 7 chr4 46457795 46457934 -109172186 - B1F SINE Alu -8 141 1 1 939 351 217 69 8 chr4 46458632 46458740 -109171380 + PB1D7 SINE Alu 39 149 0 1 939 229 175 175 0 chr4 46458897 46458954 -109171166 - MIRc SINE MIR -124 144 78 1 939 713 171 56 21 chr4 46459044 46459187 -109170933 - B1_Mur3 SINE Alu -1 148 1 1 939 254 281 71 20 chr4 46459190 46459288 -109170832 - PB1D10 SINE Alu -1 116 14 1 939 218 275 145 0 chr4 46459241 46459310 -109170810 - ID_B1 SINE B4 -83 141 63 1 939 434 33 17 0 chr4 46459310 46459370 -109170750 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 939 387 0 0 0 chr4 46459370 46459413 -109170707 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 939 607 170 0 10 chr4 46459413 46459514 -109170606 - B1_Mur4 SINE Alu -49 101 2 1 939 666 204 7 42 chr4 46459591 46459734 -109170386 - B1_Mur1 SINE Alu -2 147 10 1 939 400 283 6 70 chr4 46459734 46459759 -109170361 - ID_B1 SINE B4 0 221 65 1 939 271 270 125 39 chr4 46459741 46459845 -109170275 - PB1D9 SINE Alu -1 119 7 1 939 354 169 0 0 chr4 46460239 46460328 -109169792 + CT-rich Low_complexity Low_complexity 2 90 0 1 939 387 0 0 0 chr4 46460328 46460371 -109169749 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 939 457 147 13 13 chr4 46460412 46460488 -109169632 - B1_Mus2 SINE Alu -6 141 66 1 939 249 183 108 77 chr4 46460704 46460769 -109169351 - ID4_ SINE ID -2 81 15 1 939 1056 85 0 0 chr4 46460785 46460926 -109169194 - B1_Mus1 SINE Alu 0 148 8 1 939 320 256 22 22 chr4 46460926 46461018 -109169102 + B2_Mm2 SINE B2 15 106 -89 1 939 557 264 0 32 chr4 46461085 46461210 -109168910 + ID_B1 SINE B4 99 219 -5 1 939 356 266 0 31 chr4 46461327 46461424 -109168696 - RSINE1 SINE B4 0 165 72 1 939 194 286 28 101 chr4 46462509 46462618 -109167502 + MIR SINE MIR 152 252 -10 1 939 26 0 0 0 chr4 46463282 46463308 -109166812 + AT_rich Low_complexity Low_complexity 1 26 0 1 939 204 220 0 17 chr4 46463828 46463888 -109166232 + (CCGCG)n Simple_repeat Simple_repeat 1 59 0 1 939 23 0 0 0 chr4 46464400 46464423 -109165697 + GC_rich Low_complexity Low_complexity 1 23 0 1 939 44 56 0 0 chr4 46464572 46464644 -109165476 + GC_rich Low_complexity Low_complexity 1 72 0 1 939 23 0 0 0 chr4 46464960 46464983 -109165137 + GC_rich Low_complexity Low_complexity 1 23 0 1 939 24 53 0 0 chr4 46465014 46465052 -109165068 + GC_rich Low_complexity Low_complexity 1 38 0 1 939 382 241 0 65 chr4 46466194 46466287 -109163833 - PB1D10 SINE Alu 0 117 31 1 939 386 208 78 10 chr4 46466397 46466499 -109163621 + PB1D9 SINE Alu 5 113 -7 1 939 337 240 13 0 chr4 46467254 46467329 -109162791 + BC1_Mm scRNA scRNA 1 76 -76 1 939 340 259 171 43 chr4 46468182 46468299 -109161821 - RSINE1 SINE B4 -31 134 3 1 939 286 267 53 0 chr4 46468299 46468360 -109161760 - B1_Mur2 SINE Alu -43 106 42 1 939 505 203 77 35 chr4 46468521 46468664 -109161456 - B1_Mur3 SINE Alu 0 149 1 1 939 221 286 52 0 chr4 46468675 46468752 -109161368 - ID4_ SINE ID -1 82 2 1 939 788 178 45 56 chr4 46469037 46469216 -109160904 - ORR1C1 LTR MaLR -200 178 2 1 939 214 167 0 23 chr4 46469448 46469491 -109160629 + B1_Mus1 SINE Alu 11 52 -96 1 939 652 237 138 42 chr4 46469806 46469973 -109160147 - B3A SINE B2 -11 187 5 1 939 282 297 75 17 chr4 46469983 46470103 -109160017 - ID_B1 SINE B4 0 224 98 1 939 1621 161 81 68 chr4 46470372 46470753 -109159367 - ORR1B1 LTR MaLR -8 386 1 1 939 400 223 56 40 chr4 46471122 46471248 -109158872 - B1F1 SINE Alu -17 132 5 1 939 401 186 100 30 chr4 46471280 46471380 -109158740 + PB1D9 SINE Alu 1 107 -13 1 939 1160 75 0 0 chr4 46471665 46471811 -109158309 - B1_Mus2 SINE Alu 0 147 2 1 939 341 268 77 35 chr4 46472085 46472228 -109157892 + B1_Mur1 SINE Alu 1 149 0 1 939 683 186 26 65 chr4 46472316 46472471 -109157649 + B1_Mur2 SINE Alu 1 149 0 1 939 201 211 0 34 chr4 46472892 46472951 -109157169 + T-rich Low_complexity Low_complexity 4 60 0 1 939 442 270 42 26 chr4 46473491 46473633 -109156487 - B3A SINE B2 -51 144 2 1 939 487 266 160 59 chr4 46474352 46474640 -109155480 - MTEa LTR MaLR -62 317 1 1 939 293 250 91 55 chr4 46474672 46474782 -109155338 - PB1D7 SINE Alu -6 114 1 1 939 221 245 337 0 chr4 46475176 46475274 -109154846 - RSINE1 SINE B4 -24 141 11 1 939 262 296 14 14 chr4 46475430 46475502 -109154618 - ID4_ SINE ID -10 73 2 1 939 184 259 52 0 chr4 46475727 46475785 -109154335 + MIRb SINE MIR 140 200 -68 1 939 342 291 159 29 chr4 46475834 46476004 -109154116 - B3 SINE B2 -10 206 15 1 939 384 250 30 40 chr4 46476217 46476317 -109153803 + B3 SINE B2 112 210 -6 1 939 1308 98 43 0 chr4 46477779 46477963 -109152157 - B2_Mm2 SINE B2 -2 193 2 1 939 626 150 54 54 chr4 46478854 46479002 -109151118 + B1_Mus1 SINE Alu 1 148 0 1 939 270 0 0 0 chr4 46479816 46479846 -109150274 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1 939 271 258 61 0 chr4 46480496 46480562 -109149558 + B1F2 SINE Alu 1 70 -79 1 939 279 275 150 0 chr4 46480850 46480930 -109149190 - ID_B1 SINE B4 -132 92 1 1 939 201 245 0 0 chr4 46481734 46481783 -109148337 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 939 494 31 16 0 chr4 46482002 46482066 -109148054 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 939 931 144 14 0 chr4 46482273 46482419 -109147701 - B1_Mus1 SINE Alu 0 148 1 1 939 689 111 19 0 chr4 46482493 46482601 -109147519 - ORR1B2 LTR MaLR 0 367 258 1 939 674 110 73 9 chr4 46482599 46482709 -109147411 - B1_Mur4 SINE Alu -6 144 28 1 939 351 216 0 0 chr4 46482752 46482868 -109147252 + GA-rich Low_complexity Low_complexity 3 118 0 1 939 708 261 62 36 chr4 46483383 46483578 -109146542 - B3 SINE B2 -6 210 11 1 939 180 0 0 0 chr4 46483583 46483603 -109146517 + (T)n Simple_repeat Simple_repeat 1 20 0 1 939 333 201 30 36 chr4 46483724 46483831 -109146289 - B1F1 SINE Alu -27 122 18 1 939 300 319 41 41 chr4 46483757 46483878 -109146242 - ID_B1 SINE B4 -52 172 52 1 939 228 143 0 0 chr4 46483926 46483968 -109146152 + (T)n Simple_repeat Simple_repeat 1 42 0 1 939 1247 28 7 0 chr4 46483968 46484113 -109146007 - B1_Mus2 SINE Alu 0 147 2 1 939 231 211 0 0 chr4 46484285 46484342 -109145778 + (ATG)n Simple_repeat Simple_repeat 1 57 0 1 939 216 97 0 0 chr4 46485413 46485444 -109144676 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 939 240 210 94 0 chr4 46485710 46485785 -109144335 + ID4 SINE ID 3 86 -66 1 939 346 229 44 100 chr4 46486145 46486305 -109143815 + B3A SINE B2 1 151 -47 1 939 216 0 0 0 chr4 46486310 46486334 -109143786 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 1 939 426 191 103 19 chr4 46486529 46486636 -109143484 + B3A SINE B2 2 117 -81 1 939 829 164 7 20 chr4 46488431 46488580 -109141540 - B1_Mus2 SINE Alu 0 147 1 1 939 834 78 9 0 chr4 46489121 46489236 -109140884 - B1_Mus1 SINE Alu 0 148 33 1 939 284 152 71 57 chr4 46489178 46489248 -109140872 - 4.5SRNA scRNA scRNA -8 86 16 1 939 212 233 0 0 chr4 46489416 46489476 -109140644 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 939 249 57 0 0 chr4 46489554 46489589 -109140531 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 1 939 543 130 109 10 chr4 46489747 46489848 -109140272 + PB1D9 SINE Alu 1 111 -9 1 939 186 71 0 0 chr4 46489848 46489876 -109140244 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 939 188 34 0 33 chr4 46490065 46490095 -109140025 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 939 581 282 5 98 chr4 46490100 46490293 -109139827 - MLT1B LTR MaLR -213 177 3 1 939 1384 72 39 0 chr4 46490626 46490806 -109139314 + B2_Mm2 SINE B2 2 188 -7 1 939 464 68 282 0 chr4 46490907 46491024 -109139096 - RMER17B LTR ERVK -497 461 312 1 939 942 146 82 22 chr4 46491028 46491210 -109138910 - B2_Mm2 SINE B2 -2 193 1 1 939 539 245 212 0 chr4 46491353 46491537 -109138583 + ID_B1 SINE B4 2 224 0 1 939 321 260 194 7 chr4 46491568 46491723 -109138397 - MER21B LTR ERV1 -270 593 410 1 939 1823 128 235 0 chr4 46491788 46492107 -109138013 + ORR1B1 LTR MaLR 1 394 0 1 939 315 0 0 0 chr4 46492159 46492194 -109137926 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 939 752 297 70 16 chr4 46492198 46492441 -109137679 - B4A SINE B4 -36 256 1 1 939 385 286 26 26 chr4 46492480 46492595 -109137525 + B1F SINE Alu 19 133 -16 1 939 221 0 35 0 chr4 46492596 46492625 -109137495 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 939 300 320 67 10 chr4 46492629 46492733 -109137387 + PB1D9 SINE Alu 1 110 -10 1 939 1262 57 6 0 chr4 46492733 46492891 -109137229 + B2_Mm1a SINE B2 2 160 -33 1 939 279 0 0 0 chr4 46492891 46492922 -109137198 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 939 764 169 52 0 chr4 46492927 46493063 -109137057 - B1_Mus1 SINE Alu -1 147 5 1 939 249 57 0 0 chr4 46493097 46493132 -109136988 + (CCCTAA)n Simple_repeat Simple_repeat 2 36 0 1 939 473 205 26 35 chr4 46493144 46493260 -109136860 + PB1D9 SINE Alu 5 119 -1 1 939 656 227 23 0 chr4 46493280 46493412 -109136708 + RSINE1 SINE B4 9 143 -22 1 939 411 38 0 0 chr4 46493422 46493475 -109136645 + (TTTAG)n Simple_repeat Simple_repeat 3 55 0 1 939 1091 80 0 0 chr4 46493475 46493612 -109136508 - B1_Mm SINE Alu -9 138 2 1 939 825 169 22 30 chr4 46493682 46493875 -109136245 + B3 SINE B2 1 188 -7 1 939 371 236 148 17 chr4 46493894 46494130 -109135990 + L1MD1 LINE L1 5043 5309 -837 1 939 629 250 135 11 chr4 46494163 46494341 -109135779 + B3 SINE B2 6 205 -11 1 939 604 288 153 18 chr4 46494366 46494765 -109135355 + L1MD1 LINE L1 5317 5769 -473 1 939 462 307 0 0 chr4 46494798 46494974 -109135146 + (TTAG)n Simple_repeat Simple_repeat 1 176 0 1 939 498 300 0 0 chr4 46494990 46495170 -109134950 + (TTAG)n Simple_repeat Simple_repeat 1 180 0 1 939 367 357 0 0 chr4 46495119 46495290 -109134830 + (CAGT)n Simple_repeat Simple_repeat 1 171 0 1 939 336 82 82 0 chr4 46495302 46495351 -109134769 - ORR1B1 LTR MaLR 0 394 342 1 939 1749 16 0 0 chr4 46495366 46495559 -109134561 - B2_Mm1a SINE B2 0 193 1 1 939 1092 75 73 30 chr4 46495603 46495618 -109134502 - B2_Mm2 SINE B2 -23 172 162 1 939 477 0 0 0 chr4 46495618 46495671 -109134449 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1 939 1092 75 73 30 chr4 46495671 46495820 -109134300 - B2_Mm2 SINE B2 -34 161 1 1 939 1713 131 20 103 chr4 46495820 46496160 -109133960 - ORR1B1 LTR MaLR -42 352 41 1 939 353 274 22 59 chr4 46496167 46496303 -109133817 + L1MD1 LINE L1 5766 5896 -346 1 939 615 268 7 34 chr4 46496308 46496455 -109133665 + B1F2 SINE Alu 7 149 0 1 939 545 128 207 18 chr4 46496524 46496635 -109133485 + B1_Mur3 SINE Alu 2 133 -16 1 939 925 80 16 0 chr4 46496635 46496760 -109133360 + B1_Mus1 SINE Alu 2 128 -20 1 939 237 178 0 0 chr4 46497177 46497222 -109132898 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 939 1051 187 43 33 chr4 46497363 46497573 -109132547 - B3 SINE B2 -1 215 4 1 939 909 182 0 0 chr4 46499346 46499494 -109130626 - B1_Mus1 SINE Alu 0 148 1 1 939 255 258 46 15 chr4 46499387 46499500 -109130620 - ORR1B1-int LTR MaLR -756 753 636 1 939 673 199 58 14 chr4 46499500 46499638 -109130482 - B1_Mur2 SINE Alu -5 144 1 1 939 255 258 46 15 chr4 46499638 46499654 -109130466 - ORR1B1-int LTR MaLR -874 635 621 1 939 303 272 205 26 chr4 46499735 46499852 -109130268 + ID_B1 SINE B4 87 224 0 1 939 1153 42 7 0 chr4 46499857 46500000 -109130120 + B2_Mm1t SINE B2 2 145 -48 1 939 28 29 0 0 chr4 46500011 46500046 -109130074 + AT_rich Low_complexity Low_complexity 1 35 0 1 939 1138 56 0 0 chr4 46500606 46500749 -109129371 + B1_Mus1 SINE Alu 2 144 -4 2 939 333 0 0 0 chr4 46500755 46500792 -109129328 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 939 867 233 23 56 chr4 46501029 46501243 -109128877 + B3 SINE B2 2 208 -8 4 939 1200 34 0 7 chr4 46501290 46501438 -109128682 - B1_Mm SINE Alu 0 147 1 5 939 433 272 96 0 chr4 46503060 46503185 -109126935 - B1F SINE Alu -4 145 9 6 939 205 195 0 0 chr4 46503304 46503345 -109126775 + T-rich Low_complexity Low_complexity 1 41 0 7 939 454 317 0 21 chr4 46503363 46503508 -109126612 - B1F SINE Alu -6 143 2 8 939 695 154 20 0 chr4 46503515 46503639 -109126481 + B3 SINE B2 1 142 -51 9 939 667 195 8 8 chr4 46503858 46503982 -109126138 + B1_Mur1 SINE Alu 19 142 -7 1 939 581 211 0 9 chr4 46504275 46504385 -109125735 - B1_Mur1 SINE Alu -32 117 9 1 939 298 292 30 91 chr4 46504285 46504417 -109125703 - MT2B LTR ERVL -341 260 137 1 939 487 288 13 13 chr4 46504413 46504568 -109125552 - B3A SINE B2 -6 192 38 1 939 798 120 53 0 chr4 46504592 46504725 -109125395 - B1_Mur1 SINE Alu 0 149 10 1 939 820 144 0 14 chr4 46504751 46504892 -109125228 + B1_Mus1 SINE Alu 2 140 -8 1 939 329 194 144 10 chr4 46505295 46505399 -109124721 - B1_Mur2 SINE Alu 0 149 32 1 939 477 155 196 0 chr4 46505438 46505535 -109124585 + B1_Mur1 SINE Alu 13 128 -21 1 939 566 179 8 24 chr4 46506178 46506304 -109123816 - B1_Mur4 SINE Alu -25 125 2 1 939 518 214 59 79 chr4 46506641 46506793 -109123327 - B1F1 SINE Alu 0 149 1 1 939 478 267 44 15 chr4 46506820 46506957 -109123163 + ID_B1 SINE B4 81 221 -3 2 939 548 202 67 8 chr4 46507122 46507242 -109122878 - B1_Mur2 SINE Alu -20 129 3 2 939 558 279 14 0 chr4 46507333 46507473 -109122647 + B1F SINE Alu 1 142 -7 2 939 351 333 19 58 chr4 46507481 46507637 -109122483 + RSINE1 SINE B4 1 150 -15 2 939 884 102 66 0 chr4 46507683 46507820 -109122300 + B1_Mus2 SINE Alu 1 146 -1 2 939 254 194 16 0 chr4 46507823 46507885 -109122235 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 2 939 2232 208 26 11 chr4 46508858 46509325 -109120795 - RMER5 LTR ERV1 0 534 61 2 939 204 125 0 0 chr4 46509347 46509379 -109120741 + (TCC)n Simple_repeat Simple_repeat 2 33 0 2 939 1293 90 16 5 chr4 46509407 46509596 -109120524 - B2_Mm2 SINE B2 -4 191 1 2 939 252 250 107 40 chr4 46509747 46509853 -109120267 + B1F SINE Alu 3 114 -6 2 939 501 168 92 0 chr4 46509970 46510089 -109120031 - B1_Mus2 SINE Alu -1 146 17 3 939 425 223 174 0 chr4 46510133 46510254 -109119866 + B1F1 SINE Alu 1 142 -7 3 939 1198 164 9 18 chr4 46510910 46511127 -109118993 - B3 SINE B2 0 216 2 3 939 446 211 0 31 chr4 46511130 46511228 -109118892 - B1_Mur1 SINE Alu -1 148 54 3 939 372 337 38 71 chr4 46511228 46511285 -109118835 - ID_B1 SINE B4 -1 223 75 3 939 402 21 0 0 chr4 46511285 46511332 -109118788 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 939 372 337 38 71 chr4 46511332 46511387 -109118733 - ID SINE ID -150 74 20 3 939 870 155 7 26 chr4 46512115 46512131 -109117989 - B1_Mur1 SINE Alu 0 149 137 3 939 185 0 0 39 chr4 46512131 46512157 -109117963 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 939 870 155 7 26 chr4 46512157 46512292 -109117828 - B1_Mur1 SINE Alu -13 136 1 3 939 238 267 39 39 chr4 46512330 46512408 -109117712 - ID4_ SINE ID -3 80 3 3 939 976 159 72 34 chr4 46513131 46513144 -109116976 - MTC LTR MaLR -205 216 205 3 939 311 171 57 0 chr4 46513144 46513214 -109116906 - ID4_ SINE ID -8 75 2 4 939 976 159 72 34 chr4 46513214 46513408 -109116712 - MTC LTR MaLR -217 204 1 3 939 649 224 35 0 chr4 46516357 46516500 -109113620 - B1_Mur1 SINE Alu 0 149 2 4 939 421 234 152 28 chr4 46516515 46516660 -109113460 - RSINE1 SINE B4 0 165 3 4 939 798 236 38 5 chr4 46516854 46517063 -109113057 - B3 SINE B2 0 216 1 4 939 655 244 24 24 chr4 46517070 46517234 -109112886 - RSINE1 SINE B4 0 165 2 4 939 200 333 43 0 chr4 46517814 46517883 -109112237 + L3 LINE CR1 4344 4415 -74 4 939 1131 68 0 0 chr4 46518008 46518154 -109111966 + B1_Mus2 SINE Alu 1 146 -1 4 939 192 150 50 0 chr4 46519593 46519633 -109110487 - L2a LINE L2 -22 3404 3363 4 939 384 22 0 0 chr4 46520430 46520475 -109109645 + (CCCCG)n Simple_repeat Simple_repeat 5 49 0 4 939 714 24 0 0 chr4 46520613 46520697 -109109423 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 4 939 472 217 33 53 chr4 46520710 46520861 -109109259 + B1_Mur2 SINE Alu 2 149 0 5 939 439 186 98 33 chr4 46521070 46521192 -109108928 - B3 SINE B2 -2 214 85 5 939 1373 62 6 0 chr4 46521473 46521652 -109108468 + B2_Mm2 SINE B2 1 180 -15 5 939 438 20 0 0 chr4 46521652 46521703 -109108417 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 939 240 250 0 0 chr4 46521813 46521861 -109108259 + PB1D7 SINE Alu 65 112 -8 5 939 227 31 31 0 chr4 46521862 46521894 -109108226 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 5 939 252 74 35 53 chr4 46522093 46522150 -109107970 + T-rich Low_complexity Low_complexity 1 56 0 5 939 759 197 15 0 chr4 46522150 46522287 -109107833 - B1_Mus2 SINE Alu 0 147 9 5 939 877 137 13 33 chr4 46522303 46522454 -109107666 - B1_Mur4 SINE Alu 0 150 3 5 939 416 139 13 0 chr4 46522598 46522677 -109107443 + CT-rich Low_complexity Low_complexity 1 80 0 5 939 254 235 28 42 chr4 46522687 46522758 -109107362 - ID4_ SINE ID -13 70 1 6 939 380 254 138 0 chr4 46522868 46522906 -109107214 + B1F1 SINE Alu 1 38 -111 6 939 387 0 0 0 chr4 46522906 46522949 -109107171 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 939 486 211 0 0 chr4 46522950 46523040 -109107080 + ID_B1 SINE B4 132 221 -3 6 939 382 281 8 50 chr4 46523071 46523191 -109106929 - PB1D10 SINE Alu -1 116 2 6 939 402 57 0 0 chr4 46523695 46523748 -109106372 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 939 723 270 11 0 chr4 46523760 46523938 -109106182 + B3A SINE B2 1 180 -18 6 939 3110 16 0 3 chr4 46523958 46524326 -109105794 + IAPLTR1_Mm LTR ERVK 1 367 0 6 939 34387 29 25 2 chr4 46524326 46528453 -109101667 + IAPEz-int LTR ERVK 8 4229 -2252 6 939 14525 21 2 0 chr4 46528448 46530143 -109099977 + IAPEz-int LTR ERVK 4784 6481 0 6 939 3110 16 0 3 chr4 46530143 46530511 -109099609 + IAPLTR1_Mm LTR ERVK 1 367 0 6 940 226 250 19 0 chr4 46530680 46530732 -109099388 + RMER15 LTR ERVL 406 458 -117 6 940 683 213 0 7 chr4 46530739 46531192 -109098928 + (CA)n Simple_repeat Simple_repeat 1 449 0 6 940 222 164 0 0 chr4 46531212 46531267 -109098853 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 940 699 232 126 0 chr4 46531344 46531534 -109098586 + B3 SINE B2 3 216 0 7 940 219 150 0 0 chr4 46531615 46531655 -109098465 + (T)n Simple_repeat Simple_repeat 1 40 0 7 940 1149 61 0 13 chr4 46531657 46531807 -109098313 - B1_Mus1 SINE Alu 0 148 1 7 940 324 228 52 42 chr4 46532208 46532304 -109097816 + MTD LTR MaLR 1 97 -322 7 940 728 176 35 7 chr4 46532392 46532404 -109097716 - B1_Mus2 SINE Alu 0 147 136 7 940 600 53 0 0 chr4 46532404 46532480 -109097640 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 940 728 176 35 7 chr4 46532480 46532610 -109097510 - B1_Mus2 SINE Alu -12 135 1 7 940 733 150 0 70 chr4 46532628 46532771 -109097349 - B1_Mur3 SINE Alu -10 139 7 7 940 957 243 63 23 chr4 46532777 46533080 -109097040 + MTD LTR MaLR 104 418 -1 7 940 199 246 16 16 chr4 46533177 46533239 -109096881 + L2a LINE L2 3028 3089 -337 7 940 195 69 0 0 chr4 46533339 46533368 -109096752 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 7 940 423 0 0 0 chr4 46534053 46534100 -109096020 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 940 251 255 104 21 chr4 46534127 46534223 -109095897 + PB1D10 SINE Alu 9 112 -5 8 940 870 279 82 20 chr4 46534407 46534700 -109095420 + MTEa LTR MaLR 1 311 -68 8 940 701 23 0 11 chr4 46534702 46534790 -109095330 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 8 940 401 286 36 0 chr4 46535368 46535480 -109094640 - PB1D10 SINE Alu 0 117 2 8 940 1953 124 79 6 chr4 46535596 46535912 -109094208 + ORR1C1 LTR MaLR 1 339 -39 8 940 655 162 0 71 chr4 46535912 46536038 -109094082 + B1_Mus1 SINE Alu 1 117 -31 8 940 368 113 0 0 chr4 46536067 46536120 -109094000 + ORR1C1 LTR MaLR 324 376 -2 8 940 979 109 0 0 chr4 46536783 46536920 -109093200 - B1_Mus2 SINE Alu -8 139 3 8 940 340 282 18 35 chr4 46536967 46537081 -109093039 - PB1D10 SINE Alu -5 112 1 8 940 424 265 216 0 chr4 46537096 46537277 -109092843 + ID_B1 SINE B4 2 221 -3 8 940 329 209 0 0 chr4 46537442 46537509 -109092611 + tRNA-Ala-GCY_ tRNA tRNA 3 69 -6 8 940 1258 77 22 16 chr4 46537726 46537911 -109092209 + B2_Mm2 SINE B2 1 186 -9 9 940 341 251 168 0 chr4 46537945 46538124 -109091996 + L1MB5 LINE L1 5831 6039 -135 9 940 2181 90 19 0 chr4 46538179 46538490 -109091630 + ORR1A2 LTR MaLR 1 317 -10 9 940 320 303 11 22 chr4 46538520 46538611 -109091509 - B3A SINE B2 -63 135 46 9 940 840 71 0 0 chr4 46538648 46538760 -109091360 + (TTCC)n Simple_repeat Simple_repeat 1 112 0 9 940 1072 60 7 7 chr4 46538760 46538910 -109091210 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 9 940 434 265 50 22 chr4 46538930 46539019 -109091101 - B1F SINE Alu -4 145 52 9 940 2479 111 13 28 chr4 46539019 46539407 -109090713 + RLTR14 LTR ERV1 1 382 0 9 940 434 265 50 22 chr4 46539407 46539456 -109090664 - B1F SINE Alu -98 51 3 9 940 221 0 0 33 chr4 46539467 46539497 -109090623 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 940 1042 72 0 7 chr4 46539497 46539636 -109090484 - B1_Mus1 SINE Alu -9 139 2 9 940 320 247 12 0 chr4 46539636 46539717 -109090403 + L1MB4 LINE L1 6026 6107 -73 1 940 645 196 43 0 chr4 46539803 46539941 -109090179 + B3 SINE B2 67 210 -6 1 940 534 86 20 0 chr4 46540164 46540262 -109089858 - B1_Mus2 SINE Alu -42 107 2 1 940 362 221 23 0 chr4 46540196 46540282 -109089838 - B4A SINE B4 -140 152 65 1 940 374 70 35 0 chr4 46540675 46540732 -109089388 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 1 940 525 275 38 43 chr4 46540732 46540918 -109089202 - ID_B1 SINE B4 -16 208 24 1 940 364 279 87 35 chr4 46540960 46541075 -109089045 - L1MEc LINE L1 -4091 2309 2189 1 940 362 295 24 24 chr4 46541075 46541200 -109088920 - PB1 SINE Alu -2 125 1 1 940 246 346 9 37 chr4 46541335 46541404 -109088716 + PB1D10 SINE Alu 6 75 -42 1 940 409 270 39 23 chr4 46541404 46541533 -109088587 + B1_Mm SINE Alu 1 131 -16 1 940 246 346 9 37 chr4 46541533 46541571 -109088549 + PB1D10 SINE Alu 76 110 -7 1 940 611 158 53 38 chr4 46541549 46541681 -109088439 + B1_Mur3 SINE Alu 16 149 0 1 940 344 239 61 95 chr4 46541571 46541681 -109088439 + ID_B1 SINE B4 82 224 0 1 940 622 285 21 0 chr4 46541702 46541846 -109088274 + RSINE1 SINE B4 15 161 -4 1 940 675 246 63 147 chr4 46541934 46542016 -109088104 + B4 SINE B4 1 82 -210 1 940 969 151 162 0 chr4 46542016 46542201 -109087919 + B3 SINE B2 2 216 0 1 940 711 246 63 147 chr4 46542201 46542437 -109087683 + B4A SINE B4 83 292 0 1 940 439 270 0 151 chr4 46543009 46543201 -109086919 + B3A SINE B2 36 198 0 1 940 329 291 0 0 chr4 46543332 46543411 -109086709 - PB1D10 SINE Alu -28 89 11 1 940 434 274 14 36 chr4 46543472 46543612 -109086508 - B1F SINE Alu -12 137 1 1 940 211 219 44 89 chr4 46543886 46543976 -109086144 + L4 LINE RTE 320 405 -1624 1 940 408 253 122 7 chr4 46544077 46544224 -109085896 - RSINE1 SINE B4 0 165 2 1 940 504 0 0 0 chr4 46544254 46544310 -109085810 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1 940 388 246 132 0 chr4 46544313 46544427 -109085693 - B1F1 SINE Alu -11 138 10 1 940 902 60 237 13 chr4 46544427 46544579 -109085541 + B2_Mm2 SINE B2 3 188 -7 1 940 269 272 105 94 chr4 46544758 46544842 -109085278 + MT2B2 LTR ERVL 61 142 -442 1 940 300 53 0 0 chr4 46544842 46544880 -109085240 + (CCAA)n Simple_repeat Simple_repeat 3 40 0 1 940 269 272 105 94 chr4 46544880 46544986 -109085134 + MT2B2 LTR ERVL 143 253 -331 1 940 393 227 98 18 chr4 46544908 46545020 -109085100 + B1F1 SINE Alu 21 141 -8 1 940 264 247 33 22 chr4 46545090 46545181 -109084939 + Lx8 LINE L1 7369 7460 -13 1 940 285 281 0 89 chr4 46545313 46545403 -109084717 + ID4 SINE ID 2 83 0 1 940 241 329 47 67 chr4 46545626 46545776 -109084344 + Arthur1A DNA Tip100 1 147 -30 1 940 231 36 0 0 chr4 46546306 46546334 -109083786 + (T)n Simple_repeat Simple_repeat 1 28 0 1 940 1240 14 0 0 chr4 46546334 46546480 -109083640 - B1_Mm SINE Alu 0 147 2 1 940 1346 66 16 21 chr4 46546621 46546808 -109083312 - B2_Mm2 SINE B2 -8 187 2 1 940 228 35 0 0 chr4 46549022 46549051 -109081069 + (CGGGG)n Simple_repeat Simple_repeat 2 30 0 1 940 430 262 0 27 chr4 46549839 46549949 -109080171 - PB1D10 SINE Alu -2 115 9 1 940 24 67 0 0 chr4 46549992 46550037 -109080083 + AT_rich Low_complexity Low_complexity 1 45 0 1 940 21 0 0 0 chr4 46550436 46550457 -109079663 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 513 0 0 0 chr4 46551901 46551958 -109078162 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 940 834 236 111 5 chr4 46552477 46552694 -109077426 + MTE2b LTR MaLR 112 351 -28 1 940 195 129 0 0 chr4 46552694 46552725 -109077395 + (CAG)n Simple_repeat Simple_repeat 2 32 0 1 940 718 220 87 6 chr4 46552725 46552744 -109077376 + MTE2b LTR MaLR 352 378 -1 1 940 232 283 0 0 chr4 46553827 46553887 -109076233 - PB1D10 SINE Alu -13 104 45 1 940 437 189 0 104 chr4 46553918 46554024 -109076096 + MT2B LTR ERVL 163 257 -344 1 940 1015 66 0 0 chr4 46553932 46554069 -109076051 + B1_Mus1 SINE Alu 12 148 0 1 940 321 47 0 0 chr4 46554090 46554133 -109075987 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 940 306 0 0 0 chr4 46554596 46554630 -109075490 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 1 940 584 242 0 0 chr4 46555550 46555670 -109074450 - ID_B1 SINE B4 -2 222 103 1 940 363 287 8 42 chr4 46555694 46555814 -109074306 - PB1D10 SINE Alu -1 116 1 1 940 353 296 0 61 chr4 46555860 46555975 -109074145 - ID_B1 SINE B4 0 224 117 1 940 270 294 136 10 chr4 46556555 46556658 -109073462 + MER20B DNA MER1_type 55 170 -613 1 940 21 0 0 0 chr4 46557274 46557295 -109072825 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 604 212 45 0 chr4 46557306 46557438 -109072682 - B3 SINE B2 -9 207 70 1 940 432 181 0 0 chr4 46557471 46557554 -109072566 + CT-rich Low_complexity Low_complexity 1 83 0 1 940 1100 141 48 5 chr4 46557554 46557740 -109072380 - B2_Mm2 SINE B2 0 195 2 1 940 308 270 0 0 chr4 46557774 46557837 -109072283 - PB1D7 SINE Alu -9 111 49 1 940 377 270 27 0 chr4 46557842 46557953 -109072167 - BC1_Mm scRNA scRNA -34 118 5 1 940 1469 67 0 5 chr4 46558801 46558996 -109071124 - B2_Mm2 SINE B2 0 195 2 1 940 352 240 167 0 chr4 46559003 46559099 -109071021 - PB1D10 SINE Alu -5 112 1 1 940 242 242 32 0 chr4 46559317 46559379 -109070741 + MIRc SINE MIR 98 161 -107 1 940 2862 52 59 13 chr4 46560215 46560604 -109069516 + MTB_Mm LTR MaLR 1 407 0 1 940 2939 105 73 8 chr4 46560604 46561095 -109069025 + MTB_Mm-int LTR MaLR 3 525 -1438 1 940 318 305 147 0 chr4 46561314 46561491 -109068629 + MLT1C LTR MaLR 45 247 -220 1 940 433 235 41 0 chr4 46562492 46562590 -109067530 + PB1D7 SINE Alu 11 112 -8 1 940 541 194 13 7 chr4 46562774 46562894 -109067226 - PB1D10 SINE Alu -23 127 9 1 940 252 267 89 0 chr4 46562823 46562913 -109067207 - B4 SINE B4 -125 167 70 1 940 192 77 0 0 chr4 46562916 46562942 -109067178 + (C)n Simple_repeat Simple_repeat 1 26 0 1 940 244 255 0 0 chr4 46562966 46563017 -109067103 + L4 LINE RTE 1785 1835 -194 1 940 363 341 58 0 chr4 46563089 46563227 -109066893 + MIRm SINE MIR 2 147 -129 1 940 519 197 48 125 chr4 46563336 46563504 -109066616 - RSINE1 SINE B4 0 165 11 1 940 335 297 0 0 chr4 46563698 46563772 -109066348 + PB1 SINE Alu 29 102 -25 1 940 333 0 0 0 chr4 46564399 46564436 -109065684 + (CAGT)n Simple_repeat Simple_repeat 4 40 0 1 940 288 281 46 16 chr4 46564493 46564608 -109065512 + MIR3 SINE MIR 74 190 -86 1 940 425 323 100 13 chr4 46564726 46564955 -109065165 + L1MB8 LINE L1 5659 5907 -271 1 940 211 209 0 0 chr4 46564958 46565001 -109065119 + B4A SINE B4 89 131 -161 1 940 392 318 0 9 chr4 46565032 46565140 -109064980 + PB1 SINE Alu 1 107 -20 1 940 220 254 15 0 chr4 46565163 46565230 -109064890 + BC1_Mm scRNA scRNA 2 69 -83 1 940 245 264 19 125 chr4 46565510 46565614 -109064506 - PB1D10 SINE Alu -24 93 1 1 940 231 318 33 98 chr4 46565511 46565633 -109064487 - ID_B1 SINE B4 -51 173 60 1 940 285 151 0 0 chr4 46565831 46565884 -109064236 + GA-rich Low_complexity Low_complexity 3 55 0 1 940 275 72 0 23 chr4 46565947 46565990 -109064130 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 1 940 507 237 42 84 chr4 46565990 46566068 -109064052 - ID_B1 SINE B4 0 224 158 1 940 997 122 44 16 chr4 46566068 46566251 -109063869 - B2_Mm2 SINE B2 -7 188 1 1 940 507 237 42 84 chr4 46566251 46566315 -109063805 - ID_B1 SINE B4 -67 157 88 1 940 450 241 0 22 chr4 46566385 46566514 -109063606 + B1F2 SINE Alu 16 140 -9 1 940 240 270 132 26 chr4 46566607 46566683 -109063437 - MER117 DNA MER1_type -1 196 113 1 940 396 0 0 0 chr4 46567802 46567846 -109062274 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 940 247 253 39 26 chr4 46567942 46567953 -109062167 - ID SINE ID -138 86 9 1 940 279 172 30 30 chr4 46567953 46568019 -109062101 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 1 940 240 262 0 0 chr4 46568119 46568222 -109061898 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 940 533 210 11 22 chr4 46568242 46568422 -109061698 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1 940 397 245 0 0 chr4 46568433 46568531 -109061589 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 940 370 256 143 30 chr4 46569440 46569573 -109060547 + B1F1 SINE Alu 2 149 0 1 940 387 248 29 10 chr4 46569639 46569741 -109060379 + B1F SINE Alu 11 114 -35 1 940 590 171 0 51 chr4 46569796 46569913 -109060207 - PB1D10 SINE Alu -1 116 6 1 940 269 220 137 42 chr4 46570057 46570152 -109059968 - PB1D7 SINE Alu -2 118 15 1 940 297 281 90 45 chr4 46570107 46570174 -109059946 - ID_B1 SINE B4 -84 140 70 1 940 453 19 0 0 chr4 46570174 46570228 -109059892 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 940 297 281 90 45 chr4 46570228 46570294 -109059826 - ID SINE ID -155 69 1 1 940 186 133 0 0 chr4 46570533 46570563 -109059557 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1 940 341 211 164 45 chr4 46570568 46570667 -109059453 + B1_Mus1 SINE Alu 5 116 -32 1 940 1068 87 0 0 chr4 46570667 46570816 -109059304 + (CAAAC)n Simple_repeat Simple_repeat 1 149 0 1 940 632 130 130 0 chr4 46570825 46570948 -109059172 + B1_Mur2 SINE Alu 1 139 -10 1 940 244 267 54 101 chr4 46570948 46570967 -109059153 + PB1 SINE Alu 108 127 0 1 940 21 0 0 0 chr4 46571549 46571570 -109058550 + GC_rich Low_complexity Low_complexity 1 21 0 1 940 250 270 14 0 chr4 46571832 46571906 -109058214 + L1MD1 LINE L1 6156 6230 -12 1 940 228 35 0 0 chr4 46571986 46572015 -109058105 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 940 356 152 310 10 chr4 46572027 46572127 -109057993 + B3 SINE B2 1 130 -86 1 940 210 291 25 12 chr4 46572415 46572495 -109057625 + PB1D10 SINE Alu 6 86 -31 2 940 225 163 61 0 chr4 46573600 46573649 -109056471 + ID_B1 SINE B4 121 172 -52 2 940 288 77 0 0 chr4 46573779 46573818 -109056302 + (T)n Simple_repeat Simple_repeat 1 39 0 2 940 1094 62 0 27 chr4 46573818 46573967 -109056153 - B1_Mus1 SINE Alu 0 148 4 2 940 871 174 0 7 chr4 46573971 46574116 -109056004 - B1_Mur2 SINE Alu -1 148 5 2 940 290 329 0 0 chr4 46574678 46574751 -109055369 + RSINE1 SINE B4 89 161 -4 2 940 379 211 83 0 chr4 46574856 46574965 -109055155 + ID_B1 SINE B4 93 210 -14 2 940 249 33 0 0 chr4 46574966 46574996 -109055124 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 2 940 588 206 84 0 chr4 46576076 46576207 -109053913 - B1F1 SINE Alu -5 144 3 2 940 200 300 57 0 chr4 46576501 46576571 -109053549 + MIR SINE MIR 102 175 -87 2 940 267 104 0 0 chr4 46577322 46577370 -109052750 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 940 318 251 9 31 chr4 46577823 46577914 -109052206 + B1F SINE Alu 27 138 -11 2 940 492 32 0 0 chr4 46577916 46577978 -109052142 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 2 940 345 232 73 10 chr4 46578324 46578420 -109051700 - B4 SINE B4 -185 107 6 2 940 255 295 12 37 chr4 46578904 46578985 -109051135 + PB1D10 SINE Alu 36 114 -3 2 940 346 307 43 17 chr4 46578995 46579111 -109051009 + PB1D7 SINE Alu 2 120 0 2 940 249 378 45 39 chr4 46579578 46579645 -109050475 + ID SINE ID 15 82 -142 2 940 343 333 63 28 chr4 46579645 46579787 -109050333 + PB1D7 SINE Alu 2 148 0 2 940 314 23 23 0 chr4 46579792 46579835 -109050285 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 940 213 355 0 52 chr4 46579952 46580068 -109050052 + MER5A DNA MER1_type 42 151 -38 2 940 454 329 94 32 chr4 46580352 46580660 -109049460 + L1M4 LINE L1 4987 5313 -833 2 940 644 184 9 0 chr4 46580663 46580777 -109049343 + PB1D7 SINE Alu 6 120 0 2 940 369 278 106 8 chr4 46581296 46581472 -109048648 + MIR SINE MIR 58 245 -23 2 940 907 170 114 10 chr4 46581709 46581911 -109048209 - URR1B DNA MER1_type -1 224 2 2 940 587 252 7 0 chr4 46582070 46582205 -109047915 - ID_B1 SINE B4 -2 222 87 2 940 1511 42 5 0 chr4 46583327 46583518 -109046602 + B2_Mm1t SINE B2 1 192 -1 2 940 421 71 29 0 chr4 46583576 46583646 -109046474 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 940 265 240 0 0 chr4 46583647 46583697 -109046423 + polypyrimidine Low_complexity Low_complexity 1 50 0 2 940 932 75 15 0 chr4 46583697 46583830 -109046290 + (TTTC)n Simple_repeat Simple_repeat 1 135 0 2 940 530 228 106 0 chr4 46583832 46583955 -109046165 - B1F2 SINE Alu -13 136 1 2 940 439 279 57 6 chr4 46584045 46584178 -109045942 + B3A SINE B2 3 133 -60 2 940 324 0 0 0 chr4 46584188 46584224 -109045896 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 940 378 0 0 0 chr4 46584224 46584266 -109045854 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 940 998 165 64 0 chr4 46584274 46584462 -109045658 + Lx9 LINE L1 6667 6866 -778 2 940 2719 219 22 11 chr4 46584538 46585274 -109044846 + Lx9 LINE L1 6877 7643 -1 2 940 1008 111 14 0 chr4 46585319 46585463 -109044657 - B1_Mus1 SINE Alu -1 147 2 2 940 342 182 0 0 chr4 46585469 46585535 -109044585 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 940 188 320 110 16 chr4 46585883 46586010 -109044110 + MIRc SINE MIR 55 193 -75 2 940 311 208 52 0 chr4 46586657 46586734 -109043386 - ID4 SINE ID -2 81 1 2 940 10483 57 2 2 chr4 46588015 46589343 -109040777 + RLTR3_Mm LTR ERVK 1 1328 0 2 940 64105 1 1 0 chr4 46589343 46596588 -109033532 + MMTV-int LTR ERVK 1 7253 0 2 940 10319 66 2 2 chr4 46596588 46597916 -109032204 + RLTR3_Mm LTR ERVK 1 1328 0 2 940 574 254 0 23 chr4 46598232 46598361 -109031759 + ID_B1 SINE B4 62 187 -37 2 940 218 194 0 0 chr4 46598514 46598550 -109031570 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 940 311 274 102 19 chr4 46599440 46599548 -109030572 - PB1D10 SINE Alu 0 117 1 2 940 180 0 0 0 chr4 46599900 46599920 -109030200 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 940 337 230 68 0 chr4 46599920 46599994 -109030126 - ID_B1 SINE B4 -13 211 133 2 940 844 161 101 65 chr4 46600050 46600249 -109029871 - B3 SINE B2 -10 206 1 2 940 546 194 19 0 chr4 46600331 46600439 -109029681 - PB1D9 SINE Alu -6 114 5 2 940 301 212 0 154 chr4 46600346 46600463 -109029657 - MT2B LTR ERVL -351 250 152 2 940 189 171 0 0 chr4 46600643 46600678 -109029442 + GA-rich Low_complexity Low_complexity 2 36 0 2 940 489 269 0 0 chr4 46600686 46600794 -109029326 - PB1D7 SINE Alu -12 108 1 2 940 627 233 29 65 chr4 46600817 46600987 -109029133 + RSINE1 SINE B4 2 165 0 2 940 3770 128 15 0 chr4 46601025 46601625 -109028495 + Lx2 LINE L1 6389 6997 0 2 940 986 95 7 0 chr4 46601634 46601771 -109028349 + B1_Mus1 SINE Alu 1 138 -10 2 940 573 28 0 0 chr4 46601771 46601842 -109028278 + (CAAAA)n Simple_repeat Simple_repeat 2 72 0 2 940 323 191 44 0 chr4 46603056 46603124 -109026996 + ID4_ SINE ID 4 74 -9 2 940 229 247 0 70 chr4 46603626 46603726 -109026394 - CYRA11_Mm Unknown Y-chromosome -295 322 230 2 940 464 162 65 28 chr4 46603637 46603745 -109026375 + URR1B DNA MER1_type 83 194 -31 2 940 620 168 9 9 chr4 46604461 46604575 -109025545 + PB1D9 SINE Alu 1 114 -6 2 940 292 202 85 37 chr4 46604617 46604699 -109025421 + MT2B LTR ERVL 155 240 -361 2 940 491 200 198 9 chr4 46604634 46604750 -109025370 + B1_Mur1 SINE Alu 12 149 0 2 940 288 91 0 0 chr4 46604750 46604794 -109025326 + (A)n Simple_repeat Simple_repeat 1 44 0 2 940 846 204 82 25 chr4 46605172 46605368 -109024752 + B3 SINE B2 1 207 -9 2 940 404 0 39 0 chr4 46605371 46605422 -109024698 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 940 524 236 63 21 chr4 46605435 46605578 -109024542 + B1F1 SINE Alu 1 149 0 2 940 318 222 28 0 chr4 46606167 46606239 -109023881 - ID4 SINE ID -8 75 2 2 940 318 273 63 9 chr4 46606242 46606353 -109023767 - PB1D10 SINE Alu 0 117 1 2 940 224 137 0 19 chr4 46606574 46606626 -109023494 + G-rich Low_complexity Low_complexity 3 53 0 2 940 853 231 79 7 chr4 46606986 46607208 -109022912 - ID_B1 SINE B4 -51 241 2 2 940 464 156 0 118 chr4 46607441 46607543 -109022577 + RLTR22_Mus LTR ERVK 1 90 -1718 2 940 783 89 18 0 chr4 46607572 46607684 -109022436 - PB1D9 SINE Alu -6 114 1 2 940 1715 63 0 73 chr4 46607686 46607760 -109022360 + RLTR22_Mus LTR ERVK 88 148 -1660 2 940 1166 85 61 22 chr4 46607760 46607940 -109022180 + B2_Mm2 SINE B2 1 187 -8 2 940 1715 63 0 73 chr4 46607940 46608139 -109021981 + RLTR22_Mus LTR ERVK 149 341 -1467 2 940 3739 95 26 51 chr4 46608113 46608702 -109021418 + RLTR22_Mur LTR ERVK 1254 1826 -22 2 940 390 21 0 0 chr4 46608702 46608749 -109021371 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 940 3739 95 26 51 chr4 46608749 46608769 -109021351 + RLTR22_Mur LTR ERVK 1827 1848 0 2 940 315 283 10 48 chr4 46609999 46610103 -109020017 + MT2B2 LTR ERVL 142 241 -343 2 940 528 229 60 15 chr4 46610035 46610168 -109019952 + B1F SINE Alu 11 149 0 2 940 485 297 95 46 chr4 46610468 46610772 -109019348 - MLT1A0 LTR MaLR -44 321 3 2 940 214 313 0 24 chr4 46610872 46610957 -109019163 + MIR SINE MIR 84 166 -96 2 940 225 0 0 0 chr4 46611626 46611651 -109018469 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 940 621 0 0 0 chr4 46611710 46611779 -109018341 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 940 327 49 0 0 chr4 46612192 46612233 -109017887 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 940 243 0 0 0 chr4 46612483 46612510 -109017610 + (T)n Simple_repeat Simple_repeat 1 27 0 2 940 1230 41 0 7 chr4 46612510 46612658 -109017462 - B1_Mm SINE Alu 0 147 1 2 940 267 208 0 143 chr4 46612763 46612847 -109017273 - ID_B1 SINE B4 -18 206 135 2 940 221 98 0 24 chr4 46614801 46614843 -109015277 + (CGGGG)n Simple_repeat Simple_repeat 3 43 0 2 940 193 224 61 0 chr4 46615294 46615343 -109014777 + MIRm SINE MIR 221 272 -4 2 940 270 224 14 69 chr4 46615479 46615551 -109014569 - ID4_ SINE ID -4 79 12 2 940 455 288 9 0 chr4 46615568 46615679 -109014441 - PB1D10 SINE Alu -5 112 1 2 940 333 0 0 0 chr4 46615918 46615955 -109014165 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 940 373 285 56 16 chr4 46616180 46616305 -109013815 - ID_B1 SINE B4 -5 219 90 2 940 360 0 0 0 chr4 46616812 46616852 -109013268 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 940 185 255 0 0 chr4 46618511 46618558 -109011562 - MIR SINE MIR -79 129 83 2 940 216 304 144 37 chr4 46618921 46619109 -109011011 - L2b LINE L2 -96 3279 3072 2 940 200 217 22 0 chr4 46621318 46621364 -109008756 + GA-rich Low_complexity Low_complexity 4 50 0 2 940 333 348 27 0 chr4 46622180 46622292 -109007828 + MIR SINE MIR 18 132 -130 2 940 27 0 0 0 chr4 46622954 46622981 -109007139 + AT_rich Low_complexity Low_complexity 1 27 0 2 940 1514 43 16 16 chr4 46622994 46623181 -109006939 - B2_Mm2 SINE B2 -7 188 2 2 940 314 242 17 0 chr4 46623203 46623293 -109006827 - PB1D10 SINE Alu -52 95 2 2 940 205 340 94 57 chr4 46623774 46623933 -109006187 - MIR3 SINE MIR -38 170 6 2 940 180 0 0 0 chr4 46624911 46624931 -109005189 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 940 570 98 0 0 chr4 46624991 46625073 -109005047 + (TTTCC)n Simple_repeat Simple_repeat 3 84 0 2 940 373 320 13 58 chr4 46625076 46625232 -109004888 - ID_B1 SINE B4 0 224 76 2 940 586 297 68 24 chr4 46625277 46625467 -109004653 - B3 SINE B2 0 216 17 3 940 1806 197 99 5 chr4 46625467 46625850 -109004270 + MTD LTR MaLR 1 419 0 3 940 586 297 68 24 chr4 46625850 46625866 -109004254 - B3 SINE B2 -200 16 1 3 940 402 257 167 28 chr4 46625893 46626037 -109004083 - RSINE1 SINE B4 0 165 2 3 940 185 249 8 0 chr4 46627377 46627438 -109002682 + MIRc SINE MIR 117 178 -30 3 940 246 299 11 11 chr4 46627516 46627604 -109002516 - MIRb SINE MIR -94 174 87 3 940 311 281 0 0 chr4 46629434 46629530 -109000590 - ID_B1 SINE B4 -20 204 109 3 940 544 240 16 8 chr4 46629772 46629894 -109000226 - ID_B1 SINE B4 -5 219 97 3 940 308 265 48 29 chr4 46630145 46630250 -108999870 - PB1D10 SINE Alu -1 116 10 3 940 790 152 123 35 chr4 46630352 46630523 -108999597 - B2_Mm2 SINE B2 -9 186 1 3 940 264 256 103 71 chr4 46630934 46631060 -108999060 - MIRb SINE MIR -97 171 42 3 940 359 240 120 0 chr4 46631618 46631718 -108998402 - ID_B1 SINE B4 -13 211 100 3 940 191 282 94 28 chr4 46632645 46632751 -108997369 + MIR3 SINE MIR 1 113 -95 3 940 1075 260 18 14 chr4 46634446 46634727 -108995393 + MTE2b LTR MaLR 38 319 -60 3 940 279 114 0 0 chr4 46634727 46634771 -108995349 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 3 940 1325 80 0 44 chr4 46634774 46634796 -108995324 - B2_Mm2 SINE B2 -19 176 161 3 940 225 0 0 0 chr4 46634796 46634821 -108995299 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 940 1325 80 0 44 chr4 46634821 46634981 -108995139 - B2_Mm2 SINE B2 -35 160 2 3 940 285 182 29 43 chr4 46634981 46635050 -108995070 + MTE2b LTR MaLR 312 379 0 3 940 393 279 29 9 chr4 46635594 46635699 -108994421 - PB1D10 SINE Alu -8 109 3 3 940 404 226 87 19 chr4 46636592 46636696 -108993424 - ID_B1 SINE B4 -21 203 93 3 940 1117 85 88 22 chr4 46636974 46637155 -108992965 - B2_Mm2 SINE B2 -2 193 1 3 940 275 281 0 0 chr4 46637361 46637425 -108992695 + MLT1A LTR MaLR 79 142 -232 3 940 1258 134 114 0 chr4 46638801 46639003 -108991117 - URR1B DNA MER1_type 0 225 1 3 940 489 242 45 31 chr4 46641533 46641695 -108988425 + L1MB3 LINE L1 6009 6173 -10 3 940 473 222 78 23 chr4 46641695 46641824 -108988296 + ID_B1 SINE B4 78 213 -11 3 940 945 268 44 96 chr4 46641937 46642345 -108987775 + RMER15 LTR ERVL 189 575 0 3 940 529 288 131 39 chr4 46642350 46642632 -108987488 + MLT1A LTR MaLR 1 308 -66 3 940 351 0 0 0 chr4 46642651 46642690 -108987430 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 940 1143 175 23 36 chr4 46643123 46643342 -108986778 - B3 SINE B2 0 216 1 3 940 771 231 181 5 chr4 46643415 46643619 -108986501 - Lx8 LINE L1 -146 7327 7088 3 940 540 245 14 35 chr4 46644560 46644704 -108985416 - B4A SINE B4 -8 284 144 3 940 264 285 258 63 chr4 46644760 46644946 -108985174 - ID_B1 SINE B4 0 224 2 3 940 235 192 0 71 chr4 46644896 46644952 -108985168 - ZP3AR Satellite Satellite -123 89 38 3 940 424 51 0 93 chr4 46645068 46645154 -108984966 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 940 531 226 26 93 chr4 46645598 46645826 -108984294 - L1M4 LINE L1 -2559 3581 3337 3 940 321 247 41 0 chr4 46645834 46645907 -108984213 - PB1D10 SINE Alu -1 116 41 3 940 416 188 69 63 chr4 46645915 46646074 -108984046 - L1M4 LINE L1 -2800 3346 3187 3 940 637 206 15 8 chr4 46646074 46646206 -108983914 - RSINE1 SINE B4 -30 135 3 3 940 4704 136 57 47 chr4 46646408 46646782 -108983338 + RMER17B LTR ERVK 2 368 -590 3 940 489 34 0 0 chr4 46646782 46646841 -108983279 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 940 4704 136 57 47 chr4 46646841 46647413 -108982707 + RMER17B LTR ERVK 369 958 0 3 940 804 277 122 52 chr4 46647916 46648243 -108981877 + MTEa LTR MaLR 26 375 -4 3 940 2533 80 6 0 chr4 46648337 46648662 -108981458 + ORR1A2 LTR MaLR 1 327 0 3 940 220 260 12 72 chr4 46648730 46648813 -108981307 - MIR SINE MIR -45 217 140 3 940 204 303 0 13 chr4 46649275 46649352 -108980768 + L2 LINE L2 2326 2401 -1018 3 940 276 266 0 122 chr4 46649491 46649598 -108980522 + MT2B2 LTR ERVL 153 246 -338 3 940 650 254 0 7 chr4 46649510 46649645 -108980475 + B1F SINE Alu 6 139 -10 3 940 353 165 10 0 chr4 46649852 46649949 -108980171 + (GGGTG)n Simple_repeat Simple_repeat 5 102 0 3 940 21 0 0 0 chr4 46650087 46650108 -108980012 + AT_rich Low_complexity Low_complexity 1 21 0 3 940 1052 43 0 0 chr4 46650108 46650246 -108979874 - B1_Mus1 SINE Alu 0 148 11 3 940 351 187 35 48 chr4 46650246 46650333 -108979787 - PB1D10 SINE Alu -12 105 24 3 940 719 290 48 11 chr4 46651055 46651327 -108978793 - B4A SINE B4 -6 286 5 3 940 243 312 31 20 chr4 46651355 46651453 -108978667 - PB1D10 SINE Alu -17 100 2 3 940 301 238 49 12 chr4 46651577 46651658 -108978462 + PB1D7 SINE Alu 37 120 0 3 940 1049 112 0 14 chr4 46651686 46651831 -108978289 + B1_Mur4 SINE Alu 2 144 -6 3 940 216 191 0 0 chr4 46651831 46651878 -108978242 + A-rich Low_complexity Low_complexity 1 47 0 3 940 240 111 0 0 chr4 46651976 46652012 -108978108 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 940 419 204 9 67 chr4 46652434 46652539 -108977581 + MT2B LTR ERVL 159 257 -344 3 940 725 138 52 37 chr4 46652449 46652584 -108977536 + B1_Mus1 SINE Alu 12 148 0 3 940 208 139 0 0 chr4 46652620 46652656 -108977464 + (T)n Simple_repeat Simple_repeat 1 36 0 3 940 1145 95 0 0 chr4 46652658 46652805 -108977315 - B1_Mus1 SINE Alu 0 148 2 3 940 504 207 19 0 chr4 46654909 46655131 -108974989 + (TG)n Simple_repeat Simple_repeat 1 226 0 3 940 303 281 0 43 chr4 46656539 46656632 -108973488 + B1F SINE Alu 40 128 -21 3 940 617 156 0 54 chr4 46657169 46657298 -108972822 + ID_B1 SINE B4 102 223 -1 3 940 269 119 0 43 chr4 46657302 46657372 -108972748 + A-rich Low_complexity Low_complexity 1 67 0 3 940 1623 38 0 0 chr4 46658043 46658229 -108971891 + B2_Mm1a SINE B2 2 187 -6 3 940 21 0 0 0 chr4 46658232 46658253 -108971867 + AT_rich Low_complexity Low_complexity 1 21 0 3 940 253 303 0 15 chr4 46658331 46658398 -108971722 + ID4_ SINE ID 2 67 -16 3 940 318 26 0 0 chr4 46658406 46658445 -108971675 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 940 225 0 0 0 chr4 46658445 46658469 -108971651 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 940 384 364 80 0 chr4 46658640 46658827 -108971293 - MIR SINE MIR -19 243 42 3 940 351 0 0 0 chr4 46659229 46659268 -108970852 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 940 1079 20 127 7 chr4 46659295 46659445 -108970675 + B2_Mm2 SINE B2 3 170 -25 3 940 225 0 0 0 chr4 46659480 46659505 -108970615 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 940 1244 235 99 31 chr4 46659919 46660101 -108970019 + MTD LTR MaLR 11 190 -229 3 940 1046 144 191 55 chr4 46660101 46660182 -108969938 - URR1A DNA MER1_type 0 226 156 3 940 1632 47 0 0 chr4 46660182 46660374 -108969746 - B2_Mm1a SINE B2 0 193 2 3 940 1046 144 191 55 chr4 46660374 46660491 -108969629 - URR1A DNA MER1_type -71 155 1 3 940 1244 235 99 31 chr4 46660491 46660690 -108969430 + MTD LTR MaLR 191 418 -1 3 940 212 385 40 26 chr4 46661115 46661267 -108968853 + L2 LINE L2 2737 2890 -529 3 941 26 0 0 0 chr4 46661663 46661689 -108968431 + AT_rich Low_complexity Low_complexity 1 26 0 3 941 434 253 0 0 chr4 46664372 46664463 -108965657 - ID_B1 SINE B4 -3 221 131 3 941 219 317 0 0 chr4 46665037 46665097 -108965023 - B4A SINE B4 -147 145 86 3 941 418 246 33 33 chr4 46665310 46665432 -108964688 + RSINE1 SINE B4 3 124 -41 3 941 270 0 0 0 chr4 46665441 46665471 -108964649 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 941 432 280 42 7 chr4 46665569 46665713 -108964407 + RSINE1 SINE B4 17 165 0 3 941 284 233 284 0 chr4 46665974 46666090 -108964030 + L1MB1 LINE L1 5836 5984 -205 3 941 1570 186 30 59 chr4 46666104 46666476 -108963644 + RLTR28 LTR ERVL 151 511 -13 3 941 1954 150 22 75 chr4 46666606 46666844 -108963276 - ORR1A1 LTR MaLR 0 346 112 3 941 1184 62 7 0 chr4 46666844 46666989 -108963131 - B1_Mus2 SINE Alu 0 147 2 3 941 1954 150 22 75 chr4 46666989 46667111 -108963009 - ORR1A1 LTR MaLR -235 111 5 3 941 261 309 56 9 chr4 46667231 46667339 -108962781 + B1F2 SINE Alu 15 127 -22 3 941 524 321 62 79 chr4 46667393 46667684 -108962436 + B4A SINE B4 6 291 -1 3 941 225 205 0 194 chr4 46667908 46668011 -108962109 + ID4_ SINE ID 1 83 0 3 941 432 251 107 64 chr4 46668097 46668284 -108961836 - B3A SINE B2 0 198 4 3 941 556 319 17 96 chr4 46668298 46668537 -108961583 + ID_B1 SINE B4 5 224 0 3 941 651 250 204 7 chr4 46668671 46668821 -108961299 + MLT1B LTR MaLR 8 201 -189 3 941 228 67 0 0 chr4 46668821 46668851 -108961269 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 941 651 250 204 7 chr4 46668851 46668970 -108961150 + MLT1B LTR MaLR 202 329 -61 3 941 290 267 40 0 chr4 46669252 46669344 -108960776 + MLT1B LTR MaLR 352 489 -191 3 941 594 170 0 0 chr4 46669570 46669717 -108960403 + GA-rich Low_complexity Low_complexity 1 147 0 3 941 513 224 8 16 chr4 46670435 46670562 -108959558 + B1_Mur2 SINE Alu 1 126 -23 3 941 653 189 98 39 chr4 46670949 46671141 -108958979 - B3 SINE B2 -5 188 1 3 941 225 0 0 0 chr4 46671179 46671204 -108958916 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 941 324 0 0 0 chr4 46671368 46671404 -108958716 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 941 1027 97 23 6 chr4 46671406 46671528 -108958592 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 3 941 1068 107 11 11 chr4 46671528 46671708 -108958412 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 941 1027 52 12 3 chr4 46671708 46671811 -108958309 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 3 941 459 63 0 0 chr4 46672276 46672339 -108957781 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 941 591 303 0 7 chr4 46672356 46672499 -108957621 - RSINE1 SINE B4 -21 144 3 4 941 758 237 56 23 chr4 46672511 46672651 -108957469 - ID_B1 SINE B4 -1 223 75 4 941 234 0 0 0 chr4 46672651 46672677 -108957443 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 4 941 758 237 56 23 chr4 46672677 46672752 -108957368 - ID SINE ID -150 74 1 4 941 212 122 0 47 chr4 46673537 46673580 -108956540 + B3 SINE B2 1 41 -175 4 941 554 41 14 0 chr4 46673580 46673653 -108956467 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 941 316 311 57 32 chr4 46673725 46673848 -108956272 - MLT1A1 LTR MaLR -12 396 271 4 941 303 294 118 9 chr4 46673985 46674095 -108956025 - RSINE1 SINE B4 0 165 44 4 941 647 164 8 0 chr4 46674098 46674226 -108955894 + CT-rich Low_complexity Low_complexity 3 131 0 4 941 319 209 0 15 chr4 46674286 46674354 -108955766 - B4 SINE B4 -212 80 14 4 941 222 282 61 49 chr4 46674771 46674853 -108955267 - ID4_ SINE ID 0 83 1 4 941 387 0 0 0 chr4 46675319 46675362 -108954758 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 941 681 192 35 35 chr4 46676379 46676552 -108953568 - MIRc SINE MIR -74 194 22 4 941 432 88 35 26 chr4 46677889 46678005 -108952115 + (CAAA)n Simple_repeat Simple_repeat 4 120 0 4 941 186 171 0 0 chr4 46678291 46678332 -108951788 + C-rich Low_complexity Low_complexity 2 42 0 4 941 396 0 0 0 chr4 46679087 46679131 -108950989 + (CCA)n Simple_repeat Simple_repeat 3 46 0 4 941 248 296 109 77 chr4 46679833 46680016 -108950104 + L2a LINE L2 3208 3396 -30 4 941 334 365 53 45 chr4 46680068 46680312 -108949808 + MIRc SINE MIR 1 246 -22 4 941 300 269 0 0 chr4 46681253 46681320 -108948800 - ID4_ SINE ID -14 69 3 4 941 475 252 32 24 chr4 46681337 46681463 -108948657 - B3A SINE B2 -5 193 67 4 941 291 306 114 0 chr4 46681955 46682043 -108948077 - PB1D10 SINE Alu -4 123 29 4 941 408 325 103 37 chr4 46682415 46682658 -108947462 - MER82 DNA MER2_type -5 648 390 4 941 609 300 88 44 chr4 46682681 46682953 -108947167 - MER82 DNA MER2_type -369 284 1 4 941 718 89 18 0 chr4 46683010 46683122 -108946998 + (TCTCCC)n Simple_repeat Simple_repeat 1 114 0 4 941 534 277 0 0 chr4 46683124 46683243 -108946877 - PB1 SINE Alu -2 125 7 4 941 755 314 46 28 chr4 46683256 46683538 -108946582 + MLT1A1 LTR MaLR 64 350 -58 4 941 360 276 0 0 chr4 46683554 46683681 -108946439 + CT-rich Low_complexity Low_complexity 3 129 0 4 941 448 122 85 0 chr4 46683709 46683873 -108946247 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 941 577 259 142 23 chr4 46683896 46684157 -108945963 - B4 SINE B4 0 292 1 4 941 1061 200 0 50 chr4 46684332 46684553 -108945567 - B3 SINE B2 -6 210 1 4 941 653 135 0 0 chr4 46684583 46684687 -108945433 + B1_Mur4 SINE Alu 45 148 -2 4 941 213 39 0 0 chr4 46684721 46684747 -108945373 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 4 941 705 215 0 0 chr4 46685139 46685274 -108944846 - B1_Mur1 SINE Alu -13 136 2 4 941 249 159 0 0 chr4 46685351 46685395 -108944725 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 941 358 250 11 43 chr4 46685440 46685525 -108944595 + ID_B1 SINE B4 104 185 -39 4 941 553 239 2 1 chr4 46685525 46685644 -108944476 + B1_Mus1 SINE Alu 1 120 0 4 941 247 312 12 12 chr4 46685674 46685755 -108944365 - ID4_ SINE ID -2 81 1 4 941 276 53 0 0 chr4 46685974 46686012 -108944108 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 941 837 43 0 17 chr4 46686041 46686158 -108943962 + B1_Mus2 SINE Alu 33 147 0 4 941 210 254 0 0 chr4 46686193 46686260 -108943860 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 941 748 229 39 39 chr4 46686263 46686445 -108943675 - B3A SINE B2 -16 182 1 4 941 1215 27 0 0 chr4 46686895 46687042 -108943078 - B1_Mus2 SINE Alu 0 147 1 4 941 189 0 0 0 chr4 46687253 46687274 -108942846 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 4 941 950 131 0 0 chr4 46687527 46687672 -108942448 - B1_Mus1 SINE Alu 0 148 4 4 941 331 315 55 18 chr4 46687887 46687997 -108942123 + MIRb SINE MIR 121 234 -34 4 941 1173 230 96 9 chr4 46688795 46689128 -108940992 + RLTR28B LTR ERVL 1 362 -119 4 941 315 0 0 0 chr4 46689401 46689436 -108940684 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 941 309 26 0 0 chr4 46689436 46689473 -108940647 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 941 585 147 0 0 chr4 46689486 46689595 -108940525 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 941 345 257 0 0 chr4 46690931 46691005 -108939115 - MLT1E1A LTR MaLR -39 641 568 4 941 557 328 11 32 chr4 46691017 46691241 -108938879 - B3A SINE B2 0 195 1 4 941 185 182 0 18 chr4 46691473 46691529 -108938591 + G-rich Low_complexity Low_complexity 6 60 0 4 941 426 127 0 0 chr4 46691597 46691668 -108938452 + (CAT)n Simple_repeat Simple_repeat 2 72 0 4 941 327 322 83 55 chr4 46691966 46692147 -108937973 - RMER30 DNA MER1_type -1 201 16 4 941 644 239 81 46 chr4 46692452 46692597 -108937523 + B3 SINE B2 9 169 -47 4 941 420 20 0 0 chr4 46692597 46692646 -108937474 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 941 644 239 81 46 chr4 46692646 46692697 -108937423 + B3 SINE B2 170 212 -4 4 941 575 257 36 14 chr4 46692726 46692864 -108937256 + RSINE1 SINE B4 3 143 -22 4 941 256 113 57 0 chr4 46693023 46693076 -108937044 + CT-rich Low_complexity Low_complexity 3 58 0 4 941 645 143 9 3 chr4 46693078 46693200 -108936920 - B1_Mus1 SINE Alu -21 126 8 4 941 267 264 134 16 chr4 46693109 46693236 -108936884 - RLTR25A LTR ERVK -531 572 431 4 941 394 258 57 38 chr4 46693442 46693609 -108936511 - B4A SINE B4 -86 206 37 4 941 483 315 160 21 chr4 46693631 46693819 -108936301 + B4 SINE B4 74 287 -5 4 941 327 146 0 0 chr4 46693848 46693903 -108936217 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 941 231 333 65 0 chr4 46695191 46695284 -108934836 + MIRc SINE MIR 69 167 -101 4 941 402 188 0 12 chr4 46695434 46695520 -108934600 - PB1D10 SINE Alu -2 115 31 4 941 447 106 0 0 chr4 46696009 46696075 -108934045 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 941 922 79 93 0 chr4 46696077 46696217 -108933903 - B2_Mm2 SINE B2 -41 154 2 4 941 236 250 66 107 chr4 46696815 46696936 -108933184 + MLT1D LTR MaLR 256 371 -134 4 941 930 135 0 13 chr4 46697949 46698099 -108932021 - B1_Mus1 SINE Alu 0 148 1 4 941 1373 74 16 0 chr4 46698198 46698388 -108931732 - B2_Mm1a SINE B2 0 193 1 4 941 259 224 0 0 chr4 46698408 46698466 -108931654 + U6 snRNA snRNA 2 59 -48 4 941 677 243 75 40 chr4 46698494 46698772 -108931348 + Lx8 LINE L1 7184 7471 -2 4 941 436 250 54 0 chr4 46698999 46699111 -108931009 + MLT1M LTR MaLR 96 213 -459 4 941 288 70 0 0 chr4 46699303 46699346 -108930774 + (T)n Simple_repeat Simple_repeat 1 43 0 4 941 502 309 87 51 chr4 46699353 46699778 -108930342 - L1MC4 LINE L1 -371 7671 7217 4 941 655 293 92 29 chr4 46699884 46700200 -108929920 - L1MC4 LINE L1 -980 7062 6727 4 941 387 0 0 0 chr4 46700200 46700243 -108929877 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 941 378 207 73 6 chr4 46700274 46700439 -108929681 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 4 941 309 89 0 0 chr4 46702884 46702929 -108927191 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 4 941 285 257 39 99 chr4 46703223 46703391 -108926729 - MIR SINE MIR -115 153 3 4 941 414 0 0 0 chr4 46703962 46704008 -108926112 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 941 863 239 5 50 chr4 46704009 46704229 -108925891 - B4 SINE B4 -42 250 41 4 941 518 218 0 0 chr4 46704567 46704668 -108925452 + B3 SINE B2 49 149 -67 4 941 573 232 0 0 chr4 46706314 46706456 -108923664 + (TG)n Simple_repeat Simple_repeat 1 142 0 4 941 619 296 114 48 chr4 46706468 46706741 -108923379 - B4 SINE B4 0 292 2 4 941 269 296 51 33 chr4 46708431 46708644 -108921476 - MIR3 SINE MIR -14 254 35 4 941 2031 103 15 59 chr4 46708862 46709203 -108920917 - ORR1A4 LTR MaLR 0 329 4 4 941 349 314 58 29 chr4 46710464 46710638 -108919482 - L3 LINE CR1 -95 4394 4216 4 941 207 368 0 0 chr4 46710880 46710948 -108919172 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 941 210 289 94 19 chr4 46711270 46711376 -108918744 - MIRc SINE MIR -48 220 107 4 941 234 321 36 0 chr4 46711857 46711941 -108918179 - MER2 DNA MER2_type -4 341 255 4 941 270 279 22 34 chr4 46712013 46712102 -108918018 - MIR SINE MIR -122 140 53 4 941 477 34 0 0 chr4 46712678 46712737 -108917383 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 941 447 348 73 34 chr4 46713765 46713888 -108916232 - L1MB7 LINE L1 -151 6033 5909 4 941 4445 72 2 0 chr4 46713888 46714469 -108915651 + MT2B2 LTR ERVL 1 582 -2 4 941 447 348 73 34 chr4 46714469 46714756 -108915364 - L1MB7 LINE L1 -276 5908 5607 4 941 360 282 99 20 chr4 46715643 46715795 -108914325 - MIRb SINE MIR -32 236 73 4 941 372 293 20 0 chr4 46716415 46716514 -108913606 - PB1D7 SINE Alu -11 109 9 4 941 299 262 46 46 chr4 46716869 46716977 -108913143 - B1F SINE Alu -2 147 40 4 941 433 255 48 65 chr4 46717224 46717392 -108912728 + L1MB5 LINE L1 2110 2274 -3872 4 941 411 327 84 35 chr4 46717401 46717746 -108912374 + L1MB5 LINE L1 4143 4504 -1642 4 941 1206 279 102 9 chr4 46717992 46718444 -108911676 + L1MB5 LINE L1 4892 5385 -761 4 941 295 300 84 8 chr4 46718769 46718900 -108911220 + L1MB5 LINE L1 5437 5577 -597 4 941 469 293 143 20 chr4 46718937 46719188 -108910932 + L1MB5 LINE L1 5764 6045 -129 4 941 274 309 97 31 chr4 46719381 46719608 -108910512 + ORR1E LTR MaLR 2 243 -116 4 941 195 114 0 0 chr4 46719708 46719743 -108910377 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 941 619 258 172 8 chr4 46719770 46720020 -108910100 - B4 SINE B4 0 292 2 4 941 282 315 9 53 chr4 46720322 46720436 -108909684 - L2a LINE L2 -17 3409 3301 4 941 425 357 98 25 chr4 46720524 46720851 -108909269 + MLT1I LTR MaLR 44 394 -17 5 941 1812 115 0 144 chr4 46720851 46721166 -108908954 + ORR1A2 LTR MaLR 2 284 -43 5 941 3197 85 7 2 chr4 46721166 46721614 -108908506 + L1_Mus3 LINE L1 6186 6635 -3 5 941 1812 115 0 144 chr4 46721614 46721674 -108908446 + ORR1A2 LTR MaLR 285 323 -4 5 941 204 246 17 50 chr4 46722075 46722135 -108907985 - L4 LINE RTE -192 1837 1780 5 941 353 295 153 15 chr4 46722560 46722763 -108907357 - L2b LINE L2 -4 3371 3141 5 941 384 22 0 0 chr4 46724155 46724200 -108905920 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 941 370 287 61 0 chr4 46724205 46724320 -108905800 + L2 LINE L2 2032 2153 -1266 5 941 245 346 120 35 chr4 46725221 46725538 -108904582 + L2 LINE L2 2430 2773 -646 5 941 265 267 81 93 chr4 46725727 46725765 -108904355 + L1M4 LINE L1 4104 4139 -2007 5 941 1323 87 0 15 chr4 46725765 46725963 -108904157 + B2_Mm2 SINE B2 1 195 0 5 941 715 317 54 70 chr4 46725963 46726536 -108903584 + L1MC2 LINE L1 4130 4693 -1453 5 941 307 365 37 14 chr4 46726543 46726757 -108903363 + L1MC2 LINE L1 5664 5882 -462 5 941 321 279 95 37 chr4 46727198 46727388 -108902732 - L1ME3B LINE L1 -125 6115 5915 5 941 250 296 0 0 chr4 46727416 46727470 -108902650 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 941 699 279 106 8 chr4 46727471 46727735 -108902385 - B4A SINE B4 -1 291 2 5 941 317 312 43 45 chr4 46728533 46728708 -108901412 + MIR SINE MIR 80 252 -10 5 941 264 111 0 0 chr4 46729639 46729684 -108900436 + (CGGGGG)n Simple_repeat Simple_repeat 2 46 0 5 941 234 315 111 0 chr4 46731109 46731137 -108898983 - ID_B1 SINE B4 -24 200 82 5 941 248 291 51 0 chr4 46731137 46731216 -108898904 - PB1D10 SINE Alu -34 83 1 5 941 289 282 0 14 chr4 46731999 46732071 -108898049 + C-rich Low_complexity Low_complexity 2 72 0 5 941 304 247 0 0 chr4 46732079 46732160 -108897960 - ID_B1 SINE B4 -21 203 123 5 941 212 366 0 0 chr4 46732998 46733091 -108897029 + MIRb SINE MIR 120 212 -56 5 941 279 300 91 30 chr4 46733285 46733450 -108896670 - L2a LINE L2 -15 3411 3237 5 941 1286 25 0 0 chr4 46733467 46733625 -108896495 + B2_Mm2 SINE B2 1 158 -37 5 941 363 44 0 0 chr4 46733625 46733670 -108896450 + (CAAT)n Simple_repeat Simple_repeat 1 45 0 5 941 1093 124 32 0 chr4 46733670 46733696 -108896424 + B2_Mm1t SINE B2 162 190 -3 5 941 419 216 61 10 chr4 46734388 46734486 -108895634 - PB1D10 SINE Alu -6 111 9 5 941 250 304 179 0 chr4 46735205 46735389 -108894731 + L1MB3 LINE L1 5872 6088 -95 5 941 479 233 8 24 chr4 46735715 46735726 -108894394 - B1F SINE Alu -1 148 138 5 941 221 0 35 0 chr4 46735726 46735755 -108894365 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 5 941 479 233 8 24 chr4 46735755 46735866 -108894254 - B1F SINE Alu -12 137 28 5 941 305 331 126 37 chr4 46736841 46737111 -108893009 + L2b LINE L2 3080 3373 -2 5 941 382 249 112 24 chr4 46738712 46738881 -108891239 + ORR1E LTR MaLR 9 192 -167 5 941 333 242 66 0 chr4 46739020 46739111 -108891009 + MTEa LTR MaLR 1 97 -282 5 941 411 182 34 0 chr4 46739102 46739190 -108890930 + MTEa LTR MaLR 275 365 -14 5 941 289 360 19 114 chr4 46739394 46739604 -108890516 - Charlie7 DNA MER1_type -2158 454 265 5 941 288 333 160 0 chr4 46739889 46740039 -108890081 + MER68 LTR ERVL 369 542 -21 5 941 308 91 0 52 chr4 46741484 46741542 -108888578 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 5 941 312 174 172 55 chr4 46741546 46741674 -108888446 - MIRb SINE MIR -14 254 112 5 941 273 29 0 0 chr4 46742092 46742126 -108887994 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 941 198 167 0 0 chr4 46743294 46743330 -108886790 + (CGTG)n Simple_repeat Simple_repeat 1 36 0 5 941 857 188 0 0 chr4 46743439 46743588 -108886532 - B1_Mur4 SINE Alu 0 150 2 5 941 761 210 79 15 chr4 46743621 46743824 -108886296 - B3 SINE B2 0 216 1 5 941 234 287 19 42 chr4 46744063 46744159 -108885961 - MIRb SINE MIR -49 219 117 5 941 423 0 0 0 chr4 46744238 46744285 -108885835 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 941 267 31 0 0 chr4 46745416 46745448 -108884672 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 941 306 0 0 0 chr4 46745693 46745727 -108884393 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 941 306 278 156 0 chr4 46745789 46745879 -108884241 + B4 SINE B4 84 187 -105 5 941 228 259 0 65 chr4 46745890 46745952 -108884168 + B4 SINE B4 235 292 0 5 941 339 286 0 0 chr4 46745962 46746140 -108883980 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 941 513 277 0 5 chr4 46746172 46746456 -108883664 + (CA)n Simple_repeat Simple_repeat 1 282 0 5 941 279 0 0 0 chr4 46749008 46749039 -108881081 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 941 189 0 0 0 chr4 46750518 46750539 -108879581 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 941 211 180 19 57 chr4 46751039 46751092 -108879028 - MIRb SINE MIR -179 89 39 5 941 363 349 11 0 chr4 46752013 46752188 -108877932 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 5 941 216 367 26 7 chr4 46752236 46752387 -108877733 + (TCCA)n Simple_repeat Simple_repeat 3 156 0 5 941 190 322 32 11 chr4 46753585 46753679 -108876441 - L2 LINE L2 -1017 2402 2307 5 941 1029 113 0 0 chr4 46755039 46755198 -108874922 + (GGA)n Simple_repeat Simple_repeat 3 161 0 5 941 297 0 0 0 chr4 46756012 46756045 -108874075 + (CAG)n Simple_repeat Simple_repeat 1 33 0 5 941 260 284 12 47 chr4 46756054 46756139 -108873981 + ID4 SINE ID 2 83 0 5 941 243 88 0 0 chr4 46756143 46756177 -108873943 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 941 693 0 0 0 chr4 46756392 46756469 -108873651 + (TATTG)n Simple_repeat Simple_repeat 2 78 0 5 941 323 268 44 18 chr4 46756470 46756584 -108873536 - B1F SINE Alu -15 134 18 5 941 233 330 8 43 chr4 46756491 46756608 -108873512 - ID_B1 SINE B4 -34 190 78 5 941 381 109 0 0 chr4 46756700 46756764 -108873356 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 941 378 0 0 0 chr4 46756764 46756806 -108873314 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 941 410 220 19 57 chr4 46756819 46756925 -108873195 - RSINE1 SINE B4 -61 104 3 5 941 195 333 57 68 chr4 46757191 46757368 -108872752 - MER5B DNA MER1_type -3 175 1 5 941 318 280 45 60 chr4 46757798 46757931 -108872189 + ID_B1 SINE B4 93 223 -1 5 941 343 298 0 0 chr4 46758271 46758355 -108871765 + GA-rich Low_complexity Low_complexity 2 85 0 5 941 474 18 0 0 chr4 46759217 46759272 -108870848 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 941 207 0 0 0 chr4 46759272 46759295 -108870825 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 941 261 221 90 13 chr4 46759358 46759436 -108870684 + L3 LINE CR1 4334 4417 -72 5 941 288 0 0 0 chr4 46761672 46761704 -108868416 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 941 273 57 0 0 chr4 46762844 46762879 -108867241 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 5 941 522 0 0 0 chr4 46762890 46762948 -108867172 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 941 291 226 0 0 chr4 46762976 46763029 -108867091 + B1_Mus2 SINE Alu 2 54 -93 5 941 528 202 18 9 chr4 46763073 46763183 -108866937 + B1_Mur3 SINE Alu 39 149 0 5 941 343 277 93 50 chr4 46763158 46763340 -108866780 + LTR86A1 LTR ERVL 155 344 -169 5 941 221 265 121 0 chr4 46763492 46763575 -108866545 - MIRc SINE MIR -56 212 120 5 941 492 294 71 50 chr4 46763575 46763858 -108866262 + B4 SINE B4 2 290 -2 5 941 423 0 0 0 chr4 46763870 46763917 -108866203 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 941 335 308 0 0 chr4 46763938 46764016 -108866104 - ID4 SINE ID 0 83 6 5 941 283 340 17 25 chr4 46766332 46766453 -108863667 + LTR33B LTR ERVL 40 160 -371 5 941 239 260 108 14 chr4 46767333 46767407 -108862713 + MIRb SINE MIR 117 197 -71 5 941 194 91 0 29 chr4 46767504 46767538 -108862582 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 5 941 224 248 0 10 chr4 46767534 46767636 -108862484 + G-rich Low_complexity Low_complexity 2 102 0 5 941 353 373 0 0 chr4 46768098 46768256 -108861864 + (TG)n Simple_repeat Simple_repeat 2 159 0 5 941 939 163 24 43 chr4 46768307 46768518 -108861602 - B3 SINE B2 -9 207 1 5 941 356 374 49 47 chr4 46769326 46769755 -108860365 - L2c LINE L2 -6 3381 2952 5 941 672 270 59 52 chr4 46770120 46770399 -108859721 - ORR1E LTR MaLR -98 272 1 5 941 234 136 0 0 chr4 46770567 46770611 -108859509 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 5 941 273 298 103 28 chr4 46771131 46771276 -108858844 - MIR SINE MIR -95 167 12 5 941 1267 52 23 0 chr4 46772999 46773173 -108856947 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 5 941 186 195 24 0 chr4 46773227 46773268 -108856852 - L2b LINE L2 -310 3065 3024 5 941 269 172 16 0 chr4 46773835 46773899 -108856221 + CT-rich Low_complexity Low_complexity 1 65 0 5 941 809 258 14 23 chr4 46774283 46774501 -108855619 + B3 SINE B2 1 216 0 5 941 405 0 0 0 chr4 46774728 46774773 -108855347 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 941 405 0 0 0 chr4 46774773 46774817 -108855303 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 941 1788 173 145 7 chr4 46775878 46776292 -108853828 + RLTR28 LTR ERVL 54 524 0 5 941 738 318 171 14 chr4 46776456 46776877 -108853243 + MLT1F LTR MaLR 17 503 -45 5 941 405 280 0 18 chr4 46777782 46777891 -108852229 + B4A SINE B4 186 292 0 5 941 237 163 0 0 chr4 46777948 46777997 -108852123 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 941 335 281 137 26 chr4 46778089 46778279 -108851841 - L1MEc LINE L1 -5633 767 557 5 941 280 356 106 0 chr4 46778803 46778935 -108851185 + MIRc SINE MIR 23 168 -100 5 941 395 298 48 28 chr4 46779848 46779993 -108850127 + B1F SINE Alu 1 148 -1 5 941 211 362 0 0 chr4 46779998 46780078 -108850042 + ID4_ SINE ID 3 82 -1 5 941 1746 179 123 11 chr4 46780112 46780485 -108849635 + MTD LTR MaLR 5 419 0 6 941 494 306 20 27 chr4 46780616 46780764 -108849356 + RSINE1 SINE B4 8 154 -11 6 941 394 298 15 22 chr4 46780884 46781018 -108849102 - L1ME4a LINE L1 -265 5859 5727 6 941 270 313 0 12 chr4 46781404 46781488 -108848632 + PB1D10 SINE Alu 35 117 0 6 941 636 294 5 56 chr4 46781700 46781895 -108848225 - B3A SINE B2 -11 187 3 6 941 600 322 0 0 chr4 46782031 46782177 -108847943 - RSINE1 SINE B4 -18 147 2 6 941 251 292 0 30 chr4 46782206 46782273 -108847847 - PB1D10 SINE Alu -38 79 15 6 941 622 91 20 0 chr4 46782541 46782640 -108847480 + (CCA)n Simple_repeat Simple_repeat 1 101 0 6 941 286 294 23 5 chr4 46783414 46783639 -108846481 + (TCCA)n Simple_repeat Simple_repeat 1 229 0 6 941 251 333 0 11 chr4 46784812 46784900 -108845220 + PB1D10 SINE Alu 28 114 -3 6 941 468 0 0 0 chr4 46785959 46786011 -108844109 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 941 441 0 0 0 chr4 46786011 46786059 -108844061 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 941 568 268 8 0 chr4 46786059 46786186 -108843934 - B1_Mur1 SINE Alu -21 128 1 6 941 342 0 0 0 chr4 46786223 46786261 -108843859 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 941 728 301 0 0 chr4 46786272 46786435 -108843685 - B3A SINE B2 -35 163 1 6 941 350 263 316 12 chr4 46786466 46786638 -108843482 + ID_B1 SINE B4 1 224 0 6 941 1221 177 47 0 chr4 46787125 46787340 -108842780 - URR1B DNA MER1_type 0 225 1 6 941 214 241 17 0 chr4 46787689 46787747 -108842373 + G-rich Low_complexity Low_complexity 6 64 0 6 941 560 172 94 8 chr4 46787776 46787893 -108842227 + ID_B1 SINE B4 93 219 -5 6 941 304 0 52 35 chr4 46787944 46788002 -108842118 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 941 599 317 152 0 chr4 46788354 46788644 -108841476 - MLT1C LTR MaLR -42 425 92 6 941 258 304 25 12 chr4 46788711 46788791 -108841329 + MIRb SINE MIR 171 251 -17 6 941 309 109 0 0 chr4 46789210 46789256 -108840864 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 941 568 244 165 73 chr4 46789266 46789527 -108840593 - B4A SINE B4 -6 286 2 6 941 350 350 0 43 chr4 46790169 46790357 -108839763 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 6 941 338 366 3 22 chr4 46790404 46790833 -108839287 + (TGGG)n Simple_repeat Simple_repeat 1 420 0 6 941 219 349 6 18 chr4 46790905 46791074 -108839046 + G-rich Low_complexity Low_complexity 1 167 0 6 941 1239 59 0 0 chr4 46791510 46791679 -108838441 + (TG)n Simple_repeat Simple_repeat 1 169 0 6 942 294 194 60 0 chr4 46792826 46792893 -108837227 - MIRm SINE MIR -119 157 87 6 942 333 298 6 0 chr4 46793461 46793638 -108836482 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 942 770 232 7 0 chr4 46794139 46794290 -108835830 - B3A SINE B2 -31 167 16 6 942 294 190 69 0 chr4 46794329 46794387 -108835733 + ID SINE ID 1 62 -162 6 942 548 257 101 150 chr4 46794707 46795014 -108835106 + B4 SINE B4 1 292 0 6 942 2362 128 48 14 chr4 46795125 46795496 -108834624 + ORR1C2 LTR MaLR 1 384 0 6 942 28 29 0 0 chr4 46795600 46795635 -108834485 + AT_rich Low_complexity Low_complexity 1 35 0 6 942 271 338 69 35 chr4 46795780 46795924 -108834196 + L1_Rod LINE L1 80 228 -6944 6 942 798 180 11 85 chr4 46795950 46795969 -108834151 - Lx9 LINE L1 -238 7406 7393 6 942 1805 172 95 3 chr4 46795969 46796097 -108834023 - ORR1D1 LTR MaLR -2 372 244 6 942 279 0 0 0 chr4 46796097 46796128 -108833992 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 6 942 1805 172 95 3 chr4 46796128 46796175 -108833945 - ORR1D1 LTR MaLR -131 243 182 6 942 459 0 0 0 chr4 46796175 46796226 -108833894 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 942 1805 172 95 3 chr4 46796226 46796387 -108833733 - ORR1D1 LTR MaLR -193 181 6 6 942 798 180 11 85 chr4 46796387 46796555 -108833565 - Lx9 LINE L1 -252 7392 7233 6 942 731 325 15 0 chr4 46798008 46798211 -108831909 - ID_B1 SINE B4 -16 208 3 6 942 264 310 87 17 chr4 46798224 46798245 -108831875 - B4 SINE B4 -87 205 88 6 942 464 247 0 0 chr4 46798245 46798334 -108831786 - PB1D10 SINE Alu -26 91 3 6 942 238 303 10 110 chr4 46798253 46798353 -108831767 - MT2B LTR ERVL -360 241 152 6 942 254 345 26 34 chr4 46798845 46798962 -108831158 + L2b LINE L2 3091 3206 -169 6 942 245 310 14 0 chr4 46799579 46799650 -108830470 - MIRb SINE MIR -78 190 119 6 942 296 333 0 0 chr4 46799701 46799782 -108830338 - ID4_ SINE ID 0 83 3 6 942 555 231 34 34 chr4 46799786 46799934 -108830186 - B1F SINE Alu 0 149 2 6 942 307 277 164 29 chr4 46800600 46800771 -108829349 - MIRb SINE MIR -20 248 55 6 942 480 283 36 42 chr4 46801222 46801388 -108828732 + RMER30 DNA MER1_type 8 172 -30 6 942 207 167 0 0 chr4 46803245 46803287 -108826833 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 942 1224 227 135 9 chr4 46803476 46803810 -108826310 + MTE2a LTR MaLR 3 378 -1 6 942 300 130 19 0 chr4 46803901 46803955 -108826165 - B1_Mur3 SINE Alu -1 148 94 6 942 319 379 84 38 chr4 46804060 46804403 -108825717 - ORR1E LTR MaLR 0 359 1 6 942 641 300 60 100 chr4 46804514 46804884 -108825236 + ORR1E LTR MaLR 1 355 -4 6 942 429 81 0 0 chr4 46804975 46805037 -108825083 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 942 262 309 62 18 chr4 46805484 46805596 -108824524 - Tigger16a DNA Tigger -27 906 790 6 942 905 245 108 2 chr4 46805666 46805927 -108824193 + MTEa LTR MaLR 40 320 -59 6 942 294 29 0 0 chr4 46805944 46805979 -108824141 + (T)n Simple_repeat Simple_repeat 1 35 0 6 942 1244 48 0 0 chr4 46805979 46806126 -108823994 - B1_Mm SINE Alu 0 147 1 6 942 435 235 6 22 chr4 46806249 46806432 -108823688 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 942 189 213 0 0 chr4 46806421 46806468 -108823652 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 942 399 236 101 65 chr4 46806477 46806645 -108823475 + L1MEg LINE L1 1335 1508 -4734 6 942 265 281 34 131 chr4 46806867 46807119 -108823001 + L1MEg LINE L1 5133 5359 -787 6 942 220 27 26 26 chr4 46807122 46807160 -108822960 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 6 942 892 249 73 77 chr4 46807196 46807457 -108822663 + B4 SINE B4 22 281 -11 6 942 714 323 12 4 chr4 46807469 46807743 -108822377 + L1MEg LINE L1 5358 5635 -538 6 942 324 0 0 0 chr4 46807864 46807900 -108822220 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 942 1119 183 111 4 chr4 46809320 46809446 -108820674 + MTD LTR MaLR 1 148 -271 6 942 789 67 0 0 chr4 46809446 46809550 -108820570 + (TG)n Simple_repeat Simple_repeat 2 105 0 6 942 1119 187 112 5 chr4 46809550 46809704 -108820416 + MTD LTR MaLR 149 311 -110 6 942 532 225 8 8 chr4 46810287 46810408 -108819712 + B1_Mur1 SINE Alu 8 128 -21 6 942 354 217 12 35 chr4 46810578 46810664 -108819456 - ID_B1 SINE B4 0 224 141 6 942 353 211 239 0 chr4 46810664 46810687 -108819433 - B1F1 SINE Alu 0 149 15 6 942 250 333 13 0 chr4 46811818 46811896 -108818224 - L4 LINE RTE -214 1815 1737 6 942 454 286 78 0 chr4 46812107 46812276 -108817844 - MIRc SINE MIR -55 213 36 6 942 242 143 39 58 chr4 46813022 46813074 -108817046 - PB1D10 SINE Alu -2 115 65 6 942 207 0 0 0 chr4 46813416 46813439 -108816681 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 6 942 1968 144 9 21 chr4 46814130 46814464 -108815656 + MTC LTR MaLR 1 330 -91 6 942 273 298 18 29 chr4 46814835 46814963 -108815157 - MIRc SINE MIR -87 181 58 6 942 210 236 85 13 chr4 46817259 46817335 -108812785 - MIR SINE MIR -115 161 78 6 942 355 317 21 53 chr4 46817461 46817651 -108812469 + MIRb SINE MIR 77 260 -8 6 942 214 261 14 28 chr4 46817770 46817841 -108812279 - L2b LINE L2 -4 3371 3302 6 942 255 125 0 0 chr4 46818341 46818381 -108811739 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 6 942 181 344 15 30 chr4 46818447 46818513 -108811607 + MIRb SINE MIR 10 74 -194 6 942 231 303 84 33 chr4 46818810 46819025 -108811095 + L2 LINE L2 2407 2632 -787 6 942 280 324 0 0 chr4 46819344 46819415 -108810705 + (CCCA)n Simple_repeat Simple_repeat 2 72 0 6 942 690 225 0 0 chr4 46819417 46819595 -108810525 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 6 942 316 271 0 0 chr4 46820733 46820818 -108809302 + BC1_Mm scRNA scRNA 15 99 -53 6 942 445 297 143 53 chr4 46822009 46822254 -108807866 - Charlie16a DNA MER1_type -17 325 59 6 942 651 316 5 11 chr4 46822924 46823113 -108807007 + RMER30 DNA MER1_type 2 189 -13 6 942 213 216 19 19 chr4 46823464 46823516 -108806604 + MIRc SINE MIR 108 159 -109 6 942 781 256 56 10 chr4 46823516 46823713 -108806407 - MER58A DNA MER1_type -17 207 2 6 942 495 0 0 0 chr4 46824601 46824656 -108805464 + (CAAAC)n Simple_repeat Simple_repeat 1 55 0 6 942 183 160 26 13 chr4 46824659 46824735 -108805385 + (CAAA)n Simple_repeat Simple_repeat 3 79 0 6 942 579 222 312 9 chr4 46825782 46826000 -108804120 - B4A SINE B4 -4 288 5 6 942 271 308 34 40 chr4 46826131 46826280 -108803840 - L1M6 LINE L1 -5153 1343 1196 6 942 275 266 223 46 chr4 46829082 46829279 -108800841 - MER102a DNA MER1_type -67 263 32 6 942 479 320 36 22 chr4 46829467 46829691 -108800429 + L1MB3 LINE L1 5449 5675 -508 6 942 1384 34 11 0 chr4 46829791 46829969 -108800151 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 942 222 288 150 46 chr4 46829973 46830000 -108800120 - B2_Mm1a SINE B2 -19 174 148 6 942 252 86 0 0 chr4 46830000 46830035 -108800085 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 942 444 178 103 47 chr4 46830035 46830160 -108799960 - B3 SINE B2 -46 147 6 6 942 309 214 0 128 chr4 46830162 46830264 -108799856 - ORR1E LTR MaLR -58 321 233 6 942 449 259 90 22 chr4 46830276 46830410 -108799710 - ORR1E LTR MaLR -215 144 2 6 942 417 309 128 58 chr4 46830411 46830754 -108799366 + L1MB3 LINE L1 5692 6058 -125 6 942 333 350 8 0 chr4 46832687 46832804 -108797316 + RMER30 DNA MER1_type 30 147 -55 6 942 384 340 67 0 chr4 46833788 46833938 -108796182 - MLT1F1 LTR MaLR -1 568 409 7 942 546 229 0 0 chr4 46834152 46834331 -108795789 + C-rich Low_complexity Low_complexity 2 180 0 7 942 279 203 0 0 chr4 46834354 46834428 -108795692 + C-rich Low_complexity Low_complexity 1 74 0 7 942 297 143 0 0 chr4 46835326 46835375 -108794745 + L3 LINE CR1 4337 4385 -104 7 942 775 308 75 72 chr4 46835762 46836217 -108793903 + MT2A LTR ERVL 70 525 -8 7 942 271 308 65 0 chr4 46836229 46836336 -108793784 - RMER15 LTR ERVL -14 561 448 7 942 501 92 0 0 chr4 46836345 46836421 -108793699 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 942 401 288 144 0 chr4 46836429 46836561 -108793559 - B4A SINE B4 -35 257 107 7 942 325 299 0 0 chr4 46836754 46836841 -108793279 - Lx8 LINE L1 -349 7124 7038 7 942 236 314 131 0 chr4 46839598 46839722 -108790398 - MIRc SINE MIR -107 161 19 7 942 186 356 62 28 chr4 46840520 46840699 -108789421 + L3 LINE CR1 834 1018 -3471 7 942 221 0 0 33 chr4 46840830 46840860 -108789260 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 942 1811 131 43 0 chr4 46842209 46842538 -108787582 + RMER4A LTR ERVK 4 346 -120 7 942 324 0 0 0 chr4 46842542 46842578 -108787542 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 942 258 216 0 39 chr4 46842643 46842720 -108787400 + RMER4A LTR ERVK 392 465 -1 7 942 673 292 81 73 chr4 46842728 46843097 -108787023 - MTEb LTR MaLR -1 378 7 7 942 278 268 0 85 chr4 46843233 46843327 -108786793 + Lx7 LINE L1 5656 5741 -1955 7 942 278 262 122 4 chr4 46843374 46843533 -108786587 + L1MA5 LINE L1 5691 5929 -371 7 942 699 211 0 0 chr4 46843684 46843855 -108786265 + (TG)n Simple_repeat Simple_repeat 2 172 0 7 942 297 68 0 0 chr4 46843947 46843991 -108786129 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 942 261 0 0 0 chr4 46844185 46844214 -108785906 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 7 942 185 128 21 0 chr4 46844231 46844278 -108785842 + (TTTTTA)n Simple_repeat Simple_repeat 1 48 0 7 942 1295 75 30 82 chr4 46844281 46844513 -108785607 - L1_Mus2 LINE L1 -1 6565 6346 7 942 1246 243 59 3 chr4 46844679 46844985 -108785135 + Lx8 LINE L1 6937 7259 -214 7 942 621 232 55 25 chr4 46845084 46845283 -108784837 + Lx8 LINE L1 7269 7473 0 7 942 300 246 0 14 chr4 46846045 46846115 -108784005 + G-rich Low_complexity Low_complexity 1 69 0 7 942 575 262 0 14 chr4 46848203 46848346 -108781774 + MER33 DNA MER1_type 172 312 -12 7 942 296 212 39 29 chr4 46848843 46848945 -108781175 + L1M5 LINE L1 5333 5435 -689 7 942 297 329 123 6 chr4 46848990 46849161 -108780959 + L1M5 LINE L1 5555 5745 -379 7 942 195 125 0 0 chr4 46849212 46849252 -108780868 + (CGAG)n Simple_repeat Simple_repeat 3 42 0 7 942 246 306 0 45 chr4 46849892 46849981 -108780139 + MLT1A1 LTR MaLR 320 404 -4 7 942 24 0 0 0 chr4 46850068 46850092 -108780028 + AT_rich Low_complexity Low_complexity 1 24 0 7 942 1003 231 133 25 chr4 46853393 46853669 -108776451 + L1MC LINE L1 5438 5749 -584 7 942 3376 20 2 0 chr4 46853669 46854064 -108776056 - MTA_Mm LTR MaLR 0 396 1 7 942 1003 231 133 25 chr4 46854064 46854111 -108776009 + L1MC LINE L1 5750 5796 -537 7 942 854 259 113 15 chr4 46854956 46855222 -108774898 + B4A SINE B4 1 292 0 7 942 246 116 0 0 chr4 46855235 46855278 -108774842 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 7 942 1027 238 185 79 chr4 46855819 46856339 -108773781 + RMER15 LTR ERVL 1 575 0 7 942 229 297 13 13 chr4 46856894 46856969 -108773151 + MIRb SINE MIR 101 175 -93 7 942 1288 146 14 14 chr4 46857102 46857325 -108772795 + URR1B DNA MER1_type 3 225 0 7 942 660 299 47 0 chr4 46857506 46857714 -108772406 - ID_B1 SINE B4 -2 222 6 7 942 247 326 20 10 chr4 46857788 46857887 -108772233 + MIR3 SINE MIR 104 203 -5 7 942 189 0 0 0 chr4 46858151 46858172 -108771948 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 7 942 204 358 0 51 chr4 46858926 46859082 -108771038 + G-rich Low_complexity Low_complexity 4 151 0 7 942 250 308 0 27 chr4 46858963 46859073 -108771047 + GA-rich Low_complexity Low_complexity 4 110 0 7 942 668 138 103 65 chr4 46859389 46859544 -108770576 - B3A SINE B2 0 198 38 7 942 740 240 90 5 chr4 46859956 46860157 -108769963 + ID_B1 SINE B4 5 222 -2 7 942 462 233 29 65 chr4 46861018 46861188 -108768932 + RSINE1 SINE B4 2 165 0 7 942 337 180 22 0 chr4 46861189 46861278 -108768842 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 942 609 14 0 0 chr4 46861436 46861506 -108768614 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 7 942 2074 128 29 62 chr4 46861905 46862279 -108767841 + ORR1B2 LTR MaLR 3 364 -3 7 942 235 336 40 14 chr4 46862352 46862500 -108767620 + L3 LINE CR1 4235 4386 -103 7 942 971 185 46 0 chr4 46863459 46863654 -108766466 + B3 SINE B2 6 209 -7 7 942 489 76 0 0 chr4 46863654 46863720 -108766400 + (TAAG)n Simple_repeat Simple_repeat 2 67 0 7 942 462 114 0 0 chr4 46864769 46864839 -108765281 + (CAGG)n Simple_repeat Simple_repeat 2 71 0 7 942 376 336 159 19 chr4 46865109 46865379 -108764741 - L1M6 LINE L1 -4743 1753 1446 7 942 240 258 54 46 chr4 46865557 46865687 -108764433 - L1M6 LINE L1 -5121 1375 1245 7 942 273 146 0 0 chr4 46865722 46865770 -108764350 - PB1D10 SINE Alu -40 77 30 7 942 206 238 0 44 chr4 46866197 46866355 -108763765 + (CATA)n Simple_repeat Simple_repeat 4 154 0 7 942 842 267 49 52 chr4 46868799 46869087 -108761033 - B4A SINE B4 0 292 6 7 942 260 325 77 53 chr4 46869100 46869269 -108760851 - MIRc SINE MIR -66 202 20 7 942 373 227 0 0 chr4 46869447 46869513 -108760607 - ID4 SINE ID -16 67 2 7 942 1196 41 0 0 chr4 46869550 46869695 -108760425 - B1_Mus1 SINE Alu -3 145 1 7 942 4714 207 58 21 chr4 46869708 46870620 -108759500 + Lx7 LINE L1 6310 7254 -442 7 942 1044 72 7 0 chr4 46870620 46870758 -108759362 - B1_Mus1 SINE Alu -9 139 1 7 942 4714 207 58 21 chr4 46870758 46870887 -108759233 + Lx7 LINE L1 7255 7389 -307 7 942 422 49 16 0 chr4 46870951 46871012 -108759108 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 942 241 287 109 0 chr4 46871029 46871130 -108758990 + Lx7 LINE L1 7575 7686 -10 7 942 213 39 0 0 chr4 46871141 46871167 -108758953 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 942 395 167 77 0 chr4 46871175 46871253 -108758867 - B1_Mur3 SINE Alu -61 88 5 7 942 717 256 78 50 chr4 46871288 46871571 -108758549 + B4A SINE B4 2 292 0 7 942 1130 75 0 0 chr4 46873008 46873154 -108756966 - B1_Mm SINE Alu 0 147 2 7 942 576 204 0 0 chr4 46874397 46874573 -108755547 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 942 204 163 0 0 chr4 46874603 46874646 -108755474 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 942 432 222 0 16 chr4 46874653 46874836 -108755284 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 942 258 294 107 51 chr4 46874836 46875033 -108755087 + L3 LINE CR1 4211 4418 -71 7 942 246 95 0 0 chr4 46877276 46877318 -108752802 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 7 942 242 258 0 0 chr4 46877655 46877717 -108752403 - L1MD3 LINE L1 -318 7677 7616 7 942 374 292 30 23 chr4 46877756 46877889 -108752231 + L1MC4 LINE L1 6701 6834 -1208 7 942 488 164 11 33 chr4 46878006 46878189 -108751931 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 7 942 342 0 0 0 chr4 46878231 46878269 -108751851 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 942 486 0 0 0 chr4 46878269 46878322 -108751798 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 942 268 335 67 60 chr4 46878350 46878633 -108751487 + L1MC4 LINE L1 7618 7902 -140 7 942 345 47 0 0 chr4 46878670 46878713 -108751407 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 942 255 275 0 0 chr4 46879742 46879873 -108750247 + (TG)n Simple_repeat Simple_repeat 2 132 0 7 942 289 330 0 0 chr4 46879907 46880025 -108750095 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 942 297 326 0 0 chr4 46880493 46880579 -108749541 + MIR SINE MIR 89 174 -88 7 942 186 364 83 13 chr4 46881531 46881687 -108748433 - MIRc SINE MIR -98 170 4 7 942 291 114 0 0 chr4 46881816 46881860 -108748260 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 7 942 564 121 0 0 chr4 46884170 46884261 -108745859 + (TG)n Simple_repeat Simple_repeat 1 91 0 7 942 304 281 159 22 chr4 46885243 46885381 -108744739 + RMER15 LTR ERVL 404 560 -15 7 942 191 302 0 0 chr4 46886624 46886677 -108743443 - MIRm SINE MIR -139 137 85 7 942 486 0 0 0 chr4 46886706 46886760 -108743360 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 942 420 20 0 0 chr4 46886760 46886808 -108743312 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 942 237 312 12 0 chr4 46887226 46887306 -108742814 + L2b LINE L2 3083 3163 -212 7 942 517 297 113 0 chr4 46887379 46887564 -108742556 + MIR SINE MIR 33 238 -24 7 942 214 298 85 34 chr4 46887591 46887709 -108742411 + L2b LINE L2 3272 3395 -31 7 942 198 0 0 0 chr4 46887722 46887744 -108742376 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 942 319 215 29 15 chr4 46887776 46887913 -108742207 + (TGGA)n Simple_repeat Simple_repeat 2 140 0 7 942 956 299 47 3 chr4 46889002 46889364 -108740756 + L1MB3 LINE L1 5465 5842 -341 7 942 361 328 61 0 chr4 46889782 46890029 -108740091 + L1MB3 LINE L1 5905 6166 -17 7 942 797 216 15 104 chr4 46890506 46890521 -108739599 + B3 SINE B2 25 39 -177 7 942 1270 105 11 0 chr4 46890521 46890711 -108739409 + B2_Mm1t SINE B2 1 192 -1 7 942 797 216 15 104 chr4 46890711 46890897 -108739223 + B3 SINE B2 40 208 -8 7 942 29 0 0 0 chr4 46890908 46890937 -108739183 + AT_rich Low_complexity Low_complexity 1 29 0 7 942 429 262 105 26 chr4 46891420 46891573 -108738547 - RMER30 DNA MER1_type -27 175 11 7 942 198 0 0 0 chr4 46891601 46891623 -108738497 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 7 942 312 280 0 0 chr4 46891734 46891821 -108738299 - ID4 SINE ID -56 96 10 7 942 318 241 111 43 chr4 46891839 46891956 -108738164 - PB1 SINE Alu -1 126 2 7 942 395 278 61 0 chr4 46892394 46892509 -108737611 + ID_B1 SINE B4 1 122 -102 7 942 504 0 0 0 chr4 46892562 46892618 -108737502 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 7 942 433 284 176 63 chr4 46893154 46893467 -108736653 + MLT1E2 LTR MaLR 3 410 -244 7 942 494 222 94 0 chr4 46893467 46893584 -108736536 + B3A SINE B2 1 128 -70 7 942 363 23 0 0 chr4 46893598 46893642 -108736478 + (CATA)n Simple_repeat Simple_repeat 1 44 0 8 942 259 279 50 75 chr4 46893721 46893841 -108736279 + PB1D10 SINE Alu 1 117 0 8 942 241 325 0 0 chr4 46893849 46893926 -108736194 + ID4_ SINE ID 5 81 -2 8 942 432 0 0 0 chr4 46894691 46894739 -108735381 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 942 841 215 123 16 chr4 46894750 46895047 -108735073 + MTD LTR MaLR 59 419 0 8 942 761 261 54 45 chr4 46895049 46895270 -108734850 - B4A SINE B4 -67 225 3 8 942 691 231 14 20 chr4 46895325 46895471 -108734649 - RSINE1 SINE B4 -19 146 2 8 942 321 258 145 0 chr4 46895480 46895604 -108734516 - B1F1 SINE Alu -7 142 1 8 942 337 284 109 9 chr4 46897852 46897962 -108732158 - MIR SINE MIR -110 152 32 8 942 252 225 154 22 chr4 46897991 46898082 -108732038 + RSINE1 SINE B4 3 105 -60 8 942 477 275 65 0 chr4 46898320 46898458 -108731662 - MTD LTR MaLR 0 419 273 8 942 695 268 6 17 chr4 46898485 46898660 -108731460 - MTD LTR MaLR -239 180 8 8 942 299 312 56 8 chr4 46898671 46898797 -108731323 - L1M LINE L1 -499 5741 5610 8 942 387 246 81 8 chr4 46898926 46899049 -108731071 - L1M LINE L1 -758 5415 5284 8 942 646 289 33 29 chr4 46899825 46900035 -108730085 - ID_B1 SINE B4 -9 215 5 8 942 190 325 12 12 chr4 46900082 46900163 -108729957 - L3 LINE CR1 -694 3795 3715 8 942 210 231 77 0 chr4 46900397 46900462 -108729658 - MIR SINE MIR -26 236 167 8 942 2951 59 2 7 chr4 46900472 46900879 -108729241 + MTB_Mm LTR MaLR 3 407 0 8 942 267 236 62 23 chr4 46900879 46901004 -108729116 - MIRc SINE MIR -111 157 19 8 942 452 327 30 56 chr4 46903713 46903946 -108726174 - MIRb SINE MIR -4 264 38 8 942 562 154 72 16 chr4 46904239 46904364 -108725756 - L1MB4 LINE L1 -35 6145 6014 8 942 222 193 0 0 chr4 46904842 46904899 -108725221 + CT-rich Low_complexity Low_complexity 1 57 0 8 942 356 192 239 0 chr4 46905928 46906026 -108724094 + MTEa LTR MaLR 102 222 -157 8 942 895 206 52 19 chr4 46906027 46906240 -108723880 - MTD LTR MaLR -4 415 196 8 942 848 145 7 0 chr4 46906240 46906272 -108723848 + polypyrimidine Low_complexity Low_complexity 123 154 0 8 942 249 33 0 0 chr4 46906272 46906302 -108723818 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 942 848 145 7 0 chr4 46906302 46906421 -108723699 + polypyrimidine Low_complexity Low_complexity 3 122 0 8 942 1169 61 0 0 chr4 46906436 46906584 -108723536 - B1_Mus1 SINE Alu 0 148 1 8 942 588 246 122 11 chr4 46906584 46906773 -108723347 - MTD LTR MaLR -209 210 1 8 942 566 250 31 12 chr4 46906773 46906935 -108723185 + MTEa LTR MaLR 215 379 0 8 942 503 203 89 0 chr4 46907419 46907542 -108722578 - MLT1A0 LTR MaLR 0 365 232 8 942 459 348 54 5 chr4 46907888 46907974 -108722146 + RMER30 DNA MER1_type 8 98 -104 8 942 627 14 0 0 chr4 46907974 46908046 -108722074 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 942 459 348 54 5 chr4 46908046 46908144 -108721976 + RMER30 DNA MER1_type 99 200 -2 8 942 358 259 85 14 chr4 46908149 46908290 -108721830 + L1MB3 LINE L1 6026 6176 -7 8 942 206 231 39 0 chr4 46908944 46908996 -108721124 + MIR SINE MIR 144 197 -65 8 942 248 279 0 16 chr4 46910474 46910536 -108719584 + G-rich Low_complexity Low_complexity 5 65 0 8 942 1191 220 94 50 chr4 46911517 46911880 -108718240 + MTE2b LTR MaLR 1 379 0 8 942 591 242 24 42 chr4 46912184 46912352 -108717768 - RSINE1 SINE B4 0 165 1 8 942 288 111 0 0 chr4 46913696 46913750 -108716370 + (T)n Simple_repeat Simple_repeat 1 54 0 8 942 504 0 0 0 chr4 46914018 46914074 -108716046 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 942 455 218 36 18 chr4 46914077 46914189 -108715931 - B1_Mur1 SINE Alu -26 123 10 8 942 212 291 62 12 chr4 46914121 46914201 -108715919 - B4A SINE B4 -126 166 83 8 942 971 97 0 33 chr4 46914238 46914388 -108715732 - B1_Mur3 SINE Alu -2 147 3 8 942 1180 41 7 0 chr4 46915244 46915391 -108714729 + B1_Mus1 SINE Alu 1 148 0 8 942 240 190 52 0 chr4 46916430 46916488 -108713632 - L1MB8 LINE L1 0 6184 6122 8 942 283 353 60 8 chr4 46917365 46917482 -108712638 - MIR3 SINE MIR -52 156 34 8 942 255 276 47 61 chr4 46918198 46918337 -108711783 + MIR SINE MIR 107 245 -23 8 942 369 0 0 0 chr4 46919546 46919587 -108710533 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 942 516 242 146 6 chr4 46920523 46920681 -108709439 + B3A SINE B2 1 180 -18 8 942 270 0 0 0 chr4 46920704 46920734 -108709386 + (A)n Simple_repeat Simple_repeat 1 30 0 8 942 22 56 0 0 chr4 46920738 46920774 -108709346 + AT_rich Low_complexity Low_complexity 1 36 0 8 942 505 312 72 40 chr4 46921204 46921525 -108708595 + L1MEe LINE L1 205 535 -4319 8 942 1637 183 30 27 chr4 46922219 46922556 -108707564 - MTD LTR MaLR -81 338 1 8 942 441 298 82 6 chr4 46922570 46922752 -108707368 + MER74A LTR ERVL 28 223 -335 8 942 1622 229 74 0 chr4 46922752 46923105 -108707015 - MTE2b LTR MaLR 0 379 1 8 942 277 294 47 0 chr4 46923291 46923376 -108706744 + ORR1E LTR MaLR 47 135 -224 8 942 198 171 0 0 chr4 46923556 46923597 -108706523 + (TATG)n Simple_repeat Simple_repeat 4 44 0 8 942 206 343 21 35 chr4 46923691 46923762 -108706358 + (TATG)n Simple_repeat Simple_repeat 4 74 0 8 117 216 0 0 0 chr4 46923762 46923786 -108706334 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 943 206 343 21 35 chr4 46923786 46923859 -108706261 + (TATG)n Simple_repeat Simple_repeat 4 75 0 8 943 198 71 0 0 chr4 46923864 46923892 -108706228 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 943 785 332 22 11 chr4 46923894 46924171 -108705949 - B4A SINE B4 -2 290 11 8 943 311 289 11 11 chr4 46924179 46924270 -108705850 - B4 SINE B4 -197 95 5 8 943 441 0 0 0 chr4 46925351 46925400 -108704720 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 943 181 328 75 33 chr4 46925485 46925605 -108704515 + MIRb SINE MIR 87 211 -57 8 943 317 352 83 11 chr4 46926830 46927011 -108703109 + MIRb SINE MIR 44 237 -31 8 943 598 317 43 80 chr4 46927137 46927439 -108702681 + B4A SINE B4 2 292 0 8 943 453 116 0 0 chr4 46927466 46927535 -108702585 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 943 367 298 27 54 chr4 46928133 46928282 -108701838 + MIRb SINE MIR 93 237 -31 8 943 428 330 34 0 chr4 46928354 46928530 -108701590 - MIRc SINE MIR -4 264 83 8 943 771 11 0 0 chr4 46929225 46929313 -108700807 + (TCC)n Simple_repeat Simple_repeat 3 90 0 8 943 672 228 244 9 chr4 46929335 46929565 -108700555 - B4A SINE B4 -8 284 1 8 943 548 254 0 21 chr4 46929610 46929751 -108700369 - RSINE1 SINE B4 -24 141 4 8 943 286 357 77 35 chr4 46930128 46930468 -108699652 - MLT1C LTR MaLR -110 357 4 8 943 384 312 108 37 chr4 46930479 46930775 -108699345 + L2a LINE L2 3031 3347 -79 8 943 330 194 0 0 chr4 46931062 46931134 -108698986 + (ATG)n Simple_repeat Simple_repeat 1 72 0 8 943 534 286 191 32 chr4 46931606 46931978 -108698142 - MLT1D LTR MaLR -74 431 1 8 943 196 204 23 0 chr4 46931985 46932029 -108698091 - MIR SINE MIR -116 146 102 8 943 201 178 0 0 chr4 46933491 46933536 -108696584 + (TGG)n Simple_repeat Simple_repeat 2 46 0 8 943 404 309 8 8 chr4 46933601 46933739 -108696381 + B1F1 SINE Alu 2 147 -2 8 943 222 232 153 0 chr4 46933839 46933938 -108696182 + MIR SINE MIR 54 163 -45 8 943 254 263 25 11 chr4 46934943 46935047 -108695073 - MIRc SINE MIR -43 165 60 8 943 351 0 0 0 chr4 46935169 46935208 -108694912 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 943 387 0 0 0 chr4 46935208 46935250 -108694870 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 943 428 239 124 0 chr4 46935356 46935469 -108694651 - RSINE1 SINE B4 -36 129 3 8 943 608 293 81 19 chr4 46935475 46935684 -108694436 - B4A SINE B4 -66 226 5 8 943 512 95 0 0 chr4 46935752 46935826 -108694294 + 4.5SRNA scRNA scRNA 1 74 -20 8 943 243 0 0 0 chr4 46936065 46936092 -108694028 + (TTG)n Simple_repeat Simple_repeat 3 29 0 8 943 333 0 0 0 chr4 46936092 46936129 -108693991 + (TGG)n Simple_repeat Simple_repeat 1 37 0 8 943 2365 46 10 0 chr4 46937045 46937350 -108692770 - L1Md_F2 LINE L1 -2 6580 6273 8 943 228 250 12 73 chr4 46937649 46937731 -108692389 + MLT1L LTR MaLR 145 221 -389 8 943 531 0 0 0 chr4 46937849 46937908 -108692212 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 943 419 188 133 0 chr4 46937942 46938070 -108692050 - ORSL DNA Tip100 -68 207 63 8 943 531 90 0 0 chr4 46938623 46938701 -108691419 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 943 23 0 0 0 chr4 46939272 46939295 -108690825 + AT_rich Low_complexity Low_complexity 1 23 0 8 943 3304 110 72 0 chr4 46939295 46939812 -108690308 - Lx4A LINE L1 -2 7056 6503 8 943 450 94 0 0 chr4 46940186 46940250 -108689870 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 943 263 241 82 24 chr4 46940266 46940351 -108689769 + B3A SINE B2 6 95 -121 8 943 206 358 58 0 chr4 46940422 46940542 -108689578 + MIRb SINE MIR 64 190 -78 8 943 204 393 29 36 chr4 46940568 46940708 -108689412 - L2a LINE L2 -16 3410 3272 8 943 339 307 183 0 chr4 46941344 46941497 -108688623 + MIR SINE MIR 79 259 -3 8 943 403 304 27 0 chr4 46941611 46941723 -108688397 + MLT1G LTR MaLR 477 591 0 8 943 303 274 27 0 chr4 46941953 46942026 -108688094 - MER63D DNA AcHobo -984 77 3 8 943 700 325 109 21 chr4 46943351 46943681 -108686439 + ORR1E LTR MaLR 1 359 0 8 943 402 246 219 39 chr4 46943854 46944032 -108686088 + MLT1C LTR MaLR 61 270 -197 8 943 181 269 24 49 chr4 46945261 46945343 -108684777 + MER5B DNA MER1_type 1 80 -98 9 943 415 252 77 17 chr4 46945897 46946014 -108684106 + ID_B1 SINE B4 2 125 -99 9 943 360 0 0 0 chr4 46946700 46946740 -108683380 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 943 266 287 108 10 chr4 46947598 46947700 -108682420 + PB1D10 SINE Alu 1 112 -5 9 943 241 213 65 26 chr4 46947708 46947785 -108682335 + ID4 SINE ID 4 83 0 9 943 608 104 32 0 chr4 46949711 46949836 -108680284 + (TG)n Simple_repeat Simple_repeat 1 129 0 9 943 306 0 0 0 chr4 46950382 46950416 -108679704 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 943 778 303 183 21 chr4 46951390 46951778 -108678342 + MER70B LTR ERVL 1 451 -127 9 943 717 20 39 10 chr4 46952275 46952377 -108677743 + (TTTCC)n Simple_repeat Simple_repeat 2 106 0 9 943 183 265 20 0 chr4 46952533 46952582 -108677538 - MIRb SINE MIR -108 160 111 9 943 479 319 29 0 chr4 46952588 46952726 -108677394 + ID_B1 SINE B4 81 222 -2 9 943 231 299 165 0 chr4 46952816 46952913 -108677207 + MER68 LTR ERVL 1 113 -450 9 943 716 293 126 12 chr4 46952928 46953290 -108676830 + MER68 LTR ERVL 162 605 -2 9 943 290 102 0 33 chr4 46953373 46953434 -108676686 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 9 943 189 107 0 0 chr4 46953431 46953459 -108676661 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 943 800 139 0 11 chr4 46953487 46953669 -108676451 + (TC)n Simple_repeat Simple_repeat 1 180 0 9 943 180 0 0 0 chr4 46953669 46953689 -108676431 + (TA)n Simple_repeat Simple_repeat 1 20 0 9 943 198 0 0 0 chr4 46953689 46953710 -108676410 + (GA)n Simple_repeat Simple_repeat 2 23 0 9 943 302 196 11 28 chr4 46953732 46953910 -108676210 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 9 943 695 78 20 0 chr4 46953919 46954021 -108676099 + (TATG)n Simple_repeat Simple_repeat 2 105 0 9 943 251 286 14 0 chr4 46954023 46954093 -108676027 - ID4_ SINE ID -11 72 2 9 943 317 280 60 15 chr4 46954109 46954243 -108675877 - B1F1 SINE Alu -9 140 1 9 943 222 366 41 7 chr4 46954819 46954953 -108675167 + MIR SINE MIR 1 141 -127 9 943 200 370 38 45 chr4 46955625 46955715 -108674405 + MER5A DNA MER1_type 1 90 -99 9 943 2715 120 31 31 chr4 46955715 46956136 -108673984 + MTC LTR MaLR 1 421 0 9 943 200 370 38 45 chr4 46956136 46956178 -108673942 + MER5A DNA MER1_type 91 132 -57 9 943 353 259 12 0 chr4 46957523 46957604 -108672516 - ID4_ SINE ID 0 83 2 9 943 486 297 0 0 chr4 46957613 46957724 -108672396 - PB1D10 SINE Alu -1 116 6 9 943 243 281 130 33 chr4 46958019 46958111 -108672009 + MIR SINE MIR 127 227 -35 9 943 300 233 30 100 chr4 46958178 46958278 -108671842 + L1MC5 LINE L1 7404 7496 -465 9 943 265 359 0 0 chr4 46958344 46958472 -108671648 + L1MB3 LINE L1 5699 5826 -357 9 943 779 293 98 24 chr4 46958540 46958795 -108671325 - B4A SINE B4 -17 275 2 9 943 621 269 30 42 chr4 46958866 46959130 -108670990 + L1MB3 LINE L1 5923 6183 0 9 943 315 314 134 46 chr4 46959121 46959471 -108670649 + L1MC5 LINE L1 7505 7885 -76 9 943 441 0 0 0 chr4 46960000 46960049 -108670071 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 943 198 356 27 2 chr4 46960163 46960282 -108669838 + MIR SINE MIR 80 204 -64 9 943 369 0 0 0 chr4 46960466 46960507 -108669613 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 943 321 238 0 0 chr4 46960677 46960740 -108669380 - B1_Mur1 SINE Alu -10 139 77 9 943 307 156 15 45 chr4 46961181 46961248 -108668872 + L1MC LINE L1 5742 5806 -527 9 943 1114 188 34 5 chr4 46961276 46961484 -108668636 + B3 SINE B2 3 216 0 9 943 356 264 145 68 chr4 46961511 46961718 -108668402 + L1M2 LINE L1 5567 5789 -502 9 943 247 144 20 30 chr4 46961722 46961796 -108668324 + (TA)n Simple_repeat Simple_repeat 1 74 0 9 943 243 0 0 0 chr4 46961796 46961823 -108668297 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 943 247 144 20 30 chr4 46961823 46961848 -108668272 + (TA)n Simple_repeat Simple_repeat 2 26 0 9 943 384 22 0 0 chr4 46961970 46962015 -108668105 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 9 943 2280 283 92 128 chr4 46962021 46963300 -108666820 + Lx8 LINE L1 3047 4310 -1567 9 943 554 140 147 18 chr4 46963300 46963409 -108666711 + B1_Mur1 SINE Alu 2 124 -25 9 943 2280 283 92 128 chr4 46963409 46964562 -108665558 + Lx8 LINE L1 4311 5452 -425 9 943 186 43 0 0 chr4 46964562 46964585 -108665535 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 9 943 1978 304 79 108 chr4 46964585 46965005 -108665115 + Lx8 LINE L1 5453 5918 -1555 9 943 510 290 21 21 chr4 46965430 46965571 -108664549 + B1F SINE Alu 1 141 -8 9 943 250 271 114 0 chr4 46965581 46965651 -108664469 + ID4 SINE ID 5 82 -1 9 943 264 337 21 11 chr4 46965843 46966029 -108664091 + L1MC1 LINE L1 6030 6217 -116 9 943 480 35 0 0 chr4 46967375 46967433 -108662687 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 943 255 275 200 9 chr4 46967502 46967612 -108662508 + Charlie8 DNA MER1_type 315 445 -1983 9 943 264 296 44 22 chr4 46967944 46968034 -108662086 - MIRc SINE MIR -120 148 57 9 943 195 69 0 0 chr4 46968156 46968185 -108661935 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 9 943 365 182 248 53 chr4 46969098 46969235 -108660885 - MER58C DNA MER1_type -4 211 50 9 943 432 260 185 7 chr4 46969463 46969614 -108660506 + B3 SINE B2 1 178 -38 9 943 313 141 0 59 chr4 46970141 46970209 -108659911 + ERVL-B4-int LTR ERVL 2160 2223 -3491 9 943 256 326 10 0 chr4 46970923 46971021 -108659099 + ERVL-B4-int LTR ERVL 3117 3215 -2452 9 943 207 0 0 0 chr4 46971652 46971675 -108658445 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 943 444 19 0 0 chr4 46971896 46971949 -108658171 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 943 183 42 0 0 chr4 46971964 46971988 -108658132 + (GA)n Simple_repeat Simple_repeat 2 25 0 9 943 264 298 32 32 chr4 46972302 46972318 -108657802 - YREP_Mm Unknown Unknown -1466 346 288 9 943 271 299 11 75 chr4 46972318 46972331 -108657789 + MT2B LTR ERVL 152 158 -443 9 943 561 226 8 25 chr4 46972331 46972449 -108657671 + PB1D10 SINE Alu 1 116 -1 9 943 264 298 32 32 chr4 46972412 46972427 -108657693 - YREP_Mm Unknown Unknown -1466 287 222 9 943 991 325 26 5 chr4 46973237 46973664 -108656456 + L1MB2 LINE L1 5501 5936 -235 9 943 1174 301 157 14 chr4 46973844 46974336 -108655784 - Kanga11a DNA Tc2 -373 597 36 9 943 276 222 0 0 chr4 46974627 46974699 -108655421 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 943 295 256 167 16 chr4 46974722 46974846 -108655274 - B4 SINE B4 -14 278 78 9 943 192 111 0 0 chr4 46974847 46974883 -108655237 + (T)n Simple_repeat Simple_repeat 1 36 0 9 943 260 244 153 146 chr4 46974893 46975037 -108655083 - B4A SINE B4 -145 147 3 9 943 550 257 64 0 chr4 46975273 46975418 -108654702 + B4 SINE B4 89 245 -47 9 943 643 43 43 0 chr4 46975418 46975511 -108654609 + (GGGA)n Simple_repeat Simple_repeat 3 99 0 9 943 1101 55 37 0 chr4 46975511 46975674 -108654446 + (GGAA)n Simple_repeat Simple_repeat 1 169 0 9 943 301 197 30 90 chr4 46975679 46975746 -108654374 + B4 SINE B4 222 284 -8 9 943 270 0 0 0 chr4 46975764 46975794 -108654326 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 943 1191 254 24 24 chr4 46976770 46977061 -108653059 + B4A SINE B4 1 291 -1 9 943 204 40 0 0 chr4 46977727 46977752 -108652368 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 943 903 266 120 31 chr4 46977777 46978235 -108651885 + MLT1D LTR MaLR 5 503 -2 9 943 278 242 15 15 chr4 46978257 46978324 -108651796 + MLT1J LTR MaLR 84 150 -362 9 943 418 352 37 90 chr4 46978321 46978643 -108651477 + MLT1J2 LTR MaLR 76 380 -68 9 943 375 23 0 0 chr4 46978646 46978690 -108651430 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 943 522 280 6 31 chr4 46978716 46978878 -108651242 - B4A SINE B4 -6 286 129 9 943 683 246 184 47 chr4 46978980 46979236 -108650884 + B4A SINE B4 2 292 0 9 943 379 332 114 51 chr4 46981532 46981944 -108648176 + L1MD LINE L1 3908 4345 -1801 9 943 362 282 24 57 chr4 46982162 46982286 -108647834 + PB1D7 SINE Alu 1 120 0 9 943 310 178 110 0 chr4 46982394 46982467 -108647653 - ID4_ SINE ID 0 83 3 9 943 251 333 42 0 chr4 46983007 46983079 -108647041 - tRNA-Ala-GCG tRNA tRNA 0 75 1 9 943 299 267 0 0 chr4 46983020 46983080 -108647040 - ID4 SINE ID -18 65 6 9 943 2478 84 22 0 chr4 46983081 46983401 -108646719 - ORR1A2 LTR MaLR 0 327 1 9 943 984 309 27 11 chr4 46983745 46984007 -108646113 + B4A SINE B4 24 289 -3 9 943 21 0 0 0 chr4 46984093 46984114 -108646006 + AT_rich Low_complexity Low_complexity 1 21 0 9 943 335 269 82 37 chr4 46984312 46984435 -108645685 + L1MD LINE L1 5268 5398 -2484 9 943 407 244 0 12 chr4 46984435 46984518 -108645602 - ID4 SINE ID 0 83 2 9 943 335 262 64 27 chr4 46984518 46984551 -108645569 + L1MD LINE L1 5399 5429 -2453 9 943 799 218 50 65 chr4 46984922 46985123 -108644997 + B3A SINE B2 1 198 0 9 943 252 319 113 17 chr4 46985307 46985537 -108644583 - RMER12 LTR ERVK -334 988 737 9 943 1210 61 0 7 chr4 46985885 46986033 -108644087 - B1_Mm SINE Alu 0 147 1 9 943 1454 231 93 13 chr4 46986163 46986541 -108643579 - MTD LTR MaLR -9 410 3 9 943 449 275 169 54 chr4 46986659 46986901 -108643219 - B4 SINE B4 -21 271 2 9 943 185 0 40 0 chr4 46987363 46987388 -108642732 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 943 1752 174 33 0 chr4 46987510 46987815 -108642305 - Lx5 LINE L1 -4 7046 6732 9 943 759 250 12 12 chr4 46988112 46988274 -108641846 + ID_B1 SINE B4 1 162 -62 9 943 445 228 134 0 chr4 46988296 46988423 -108641697 - B1F1 SINE Alu -2 147 4 9 943 493 239 9 18 chr4 46988827 46988938 -108641182 + PB1D10 SINE Alu 1 110 -7 9 943 207 0 0 0 chr4 46988949 46988972 -108641148 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 943 532 278 5 78 chr4 46989004 46989195 -108640925 + ID_B1 SINE B4 34 210 -14 9 943 910 57 24 8 chr4 46989082 46989198 -108640922 + B1_Mus1 SINE Alu 22 140 -8 9 943 270 0 0 0 chr4 46989198 46989228 -108640892 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 943 574 271 20 34 chr4 46990893 46991042 -108639078 + B1F2 SINE Alu 3 149 0 9 943 917 104 0 50 chr4 46991193 46991334 -108638786 + B1_Mus1 SINE Alu 14 147 -1 1 943 855 210 83 36 chr4 46991352 46991545 -108638575 - B3 SINE B2 -7 209 8 1 943 449 228 22 26 chr4 46991573 46991692 -108638428 - PB1D7 SINE Alu -27 121 5 1 943 193 304 22 22 chr4 46991702 46991795 -108638325 - MIR SINE MIR -75 193 103 1 943 191 281 35 0 chr4 46992019 46992076 -108638044 - L2b LINE L2 -3 3372 3314 1 943 1188 94 65 32 chr4 46992452 46992638 -108637482 - B2_Mm2 SINE B2 -1 194 3 1 943 344 284 84 0 chr4 46992937 46993032 -108637088 - L2b LINE L2 -2 3373 3271 1 943 186 98 219 0 chr4 46994056 46994097 -108636023 + MIR SINE MIR 98 147 -61 1 943 246 382 83 10 chr4 46996319 46996512 -108633608 + LTR16B1 LTR ERVL 171 377 -103 1 943 618 158 0 0 chr4 46998098 46998262 -108631858 + CT-rich Low_complexity Low_complexity 2 165 0 1 943 555 16 0 0 chr4 46998812 46998876 -108631244 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 943 534 340 126 6 chr4 46998908 46999234 -108630886 + MLT1K LTR MaLR 154 518 -77 1 943 486 240 98 8 chr4 46999403 46999525 -108630595 - B1F SINE Alu -7 142 10 1 943 345 299 72 36 chr4 46999525 46999538 -108630582 - ID_B1 SINE B4 -3 217 78 1 943 347 364 36 0 chr4 46999841 46999981 -108630139 + RSINE1 SINE B4 2 146 -19 1 943 459 0 0 0 chr4 47000184 47000235 -108629885 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 943 268 330 67 0 chr4 47000240 47000434 -108629686 + L1ME4a LINE L1 5719 5925 -199 2 943 227 311 27 0 chr4 47000968 47001042 -108629078 + B1_Mur4 SINE Alu 70 145 -5 3 943 188 250 21 0 chr4 47001818 47001866 -108628254 - L2a LINE L2 -18 3408 3360 4 943 31 44 0 0 chr4 47004147 47004192 -108625928 + GC_rich Low_complexity Low_complexity 1 45 0 5 943 180 152 0 0 chr4 47004201 47004234 -108625886 + (CAG)n Simple_repeat Simple_repeat 1 33 0 6 943 195 42 0 0 chr4 47004241 47004265 -108625855 + (CGG)n Simple_repeat Simple_repeat 2 25 0 7 943 24 0 0 0 chr4 47004344 47004368 -108625752 + GC_rich Low_complexity Low_complexity 1 24 0 8 943 27 0 0 0 chr4 47004442 47004469 -108625651 + GC_rich Low_complexity Low_complexity 1 27 0 9 943 207 69 0 0 chr4 47004524 47004553 -108625567 + (CGAG)n Simple_repeat Simple_repeat 2 30 0 1 943 23 86 0 0 chr4 47004851 47004909 -108625211 + GC_rich Low_complexity Low_complexity 1 58 0 1 943 239 300 27 18 chr4 47005545 47005657 -108624463 - MIRc SINE MIR -32 236 124 1 943 240 305 130 15 chr4 47006651 47006851 -108623269 - L2 LINE L2 -345 3074 2852 1 943 649 191 22 51 chr4 47007633 47007771 -108622349 - RSINE1 SINE B4 -17 148 15 1 943 344 146 0 0 chr4 47008403 47008458 -108621662 + B4A SINE B4 2 56 -236 1 943 802 70 35 0 chr4 47008457 47008571 -108621549 + B1_Mm SINE Alu 29 146 -1 1 943 252 0 0 0 chr4 47008571 47008599 -108621521 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 943 392 327 75 38 chr4 47008619 47008674 -108621446 + B4A SINE B4 42 97 -195 1 943 699 226 136 5 chr4 47008674 47008865 -108621255 + B3 SINE B2 1 216 0 1 943 392 327 75 38 chr4 47008865 47008968 -108621152 + B4A SINE B4 98 205 -87 1 943 317 325 27 93 chr4 47009490 47009673 -108620447 + MIR SINE MIR 28 198 -64 2 943 230 370 39 0 chr4 47010429 47010556 -108619564 - L3 LINE CR1 -834 3655 3524 2 943 303 357 136 14 chr4 47011284 47011579 -108618541 - L1ME3 LINE L1 -8 6154 5824 2 943 208 305 97 21 chr4 47011974 47012118 -108618002 + L2c LINE L2 3054 3208 -179 2 943 593 192 32 8 chr4 47012853 47012979 -108617141 - B1_Mus1 SINE Alu 0 148 20 2 943 497 283 112 0 chr4 47013146 47013298 -108616822 - MLT1A0 LTR MaLR -1 364 196 2 943 789 249 100 22 chr4 47013505 47013735 -108616385 + B4A SINE B4 31 278 -14 2 943 498 299 75 101 chr4 47013925 47014271 -108615849 + ORR1E LTR MaLR 1 337 -22 2 943 216 0 0 0 chr4 47014600 47014624 -108615496 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 943 824 102 16 0 chr4 47014835 47014963 -108615157 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 2 943 591 154 92 17 chr4 47015074 47015193 -108614927 + B1_Mur4 SINE Alu 10 137 -13 3 943 663 13 0 0 chr4 47015805 47015881 -108614239 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 943 597 250 144 0 chr4 47016346 47016506 -108613614 - B3A SINE B2 -15 183 1 3 943 519 290 20 7 chr4 47016509 47016655 -108613465 - B1F2 SINE Alu -1 148 1 3 943 300 286 119 40 chr4 47017165 47017391 -108612729 - MLT1H LTR MaLR -87 462 219 3 943 1382 250 64 8 chr4 47017441 47017800 -108612320 - MTEa LTR MaLR 0 379 1 3 943 739 159 13 0 chr4 47017912 47018063 -108612057 + CT-rich Low_complexity Low_complexity 1 153 0 3 943 801 203 7 13 chr4 47018063 47018213 -108611907 - B1_Mur3 SINE Alu 0 149 1 3 943 412 284 6 92 chr4 47018213 47018394 -108611726 - MTEb LTR MaLR -39 340 151 3 943 595 262 35 59 chr4 47018515 47018718 -108611402 - B3A SINE B2 0 198 1 3 943 263 310 86 9 chr4 47018815 47018942 -108611178 + MIR SINE MIR 20 149 -119 4 943 593 254 160 16 chr4 47019070 47019258 -108610862 + ID_B1 SINE B4 2 216 -8 4 943 1035 155 193 0 chr4 47019278 47019459 -108610661 + B3 SINE B2 1 216 0 4 943 513 279 29 0 chr4 47020158 47020298 -108609822 + ID_B1 SINE B4 1 144 -80 4 943 217 279 49 0 chr4 47020253 47020307 -108609813 + PB1D10 SINE Alu 19 75 -42 4 943 457 265 132 0 chr4 47020307 47020443 -108609677 + B4 SINE B4 2 155 -137 4 943 596 187 0 3 chr4 47020470 47020775 -108609345 + (CA)n Simple_repeat Simple_repeat 1 303 0 4 943 212 259 45 80 chr4 47020775 47020790 -108609330 + PB1D9 SINE Alu 35 115 -1 4 943 355 188 101 0 chr4 47020790 47020859 -108609261 + ID_B1 SINE B4 147 222 -2 4 943 425 226 16 87 chr4 47021242 47021368 -108608752 + PB1D10 SINE Alu 1 117 0 4 943 261 237 120 30 chr4 47021997 47022097 -108608023 - PB1D10 SINE Alu -2 115 7 4 943 403 287 0 0 chr4 47022108 47022202 -108607918 - PB1D10 SINE Alu -5 112 19 5 943 1791 155 20 49 chr4 47025826 47026172 -108603948 + MTC LTR MaLR 1 336 -85 5 943 825 255 178 4 chr4 47027165 47027440 -108602680 + MTE2a LTR MaLR 57 379 0 5 943 188 367 89 11 chr4 47028308 47028487 -108601633 + MIR SINE MIR 18 210 -52 5 943 257 231 279 0 chr4 47030891 47030995 -108599125 + MIR SINE MIR 17 149 -113 5 943 732 187 15 0 chr4 47031167 47031301 -108598819 + B1_Mur2 SINE Alu 7 142 -7 5 943 619 301 6 0 chr4 47032032 47032195 -108597925 + RSINE1 SINE B4 2 165 0 5 943 288 250 65 0 chr4 47032511 47032603 -108597517 + PB1D10 SINE Alu 2 99 -18 5 943 248 338 36 36 chr4 47033162 47033300 -108596820 - B1_Mus2 SINE Alu 0 147 10 5 943 794 297 0 10 chr4 47033187 47033391 -108596729 - ID_B1 SINE B4 -21 203 2 5 943 668 223 118 16 chr4 47033528 47033715 -108596405 + B3 SINE B2 1 206 -10 6 943 396 0 0 0 chr4 47034895 47034939 -108595181 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 943 361 250 55 18 chr4 47035006 47035116 -108595004 + MIR SINE MIR 5 118 -144 6 943 515 255 81 0 chr4 47037919 47038068 -108592052 - ID_B1 SINE B4 -63 161 1 6 943 374 250 0 71 chr4 47038166 47038179 -108591941 - ID_B1 SINE B4 -39 185 82 6 943 481 224 0 10 chr4 47038179 47038278 -108591842 - B1F SINE Alu -51 98 1 6 943 308 304 136 35 chr4 47040356 47040554 -108589566 - L1MC LINE L1 -1580 4566 4349 6 943 696 241 55 10 chr4 47040554 47040745 -108589375 + B3 SINE B2 1 187 -8 6 943 433 299 44 13 chr4 47040748 47040907 -108589213 - L1M4 LINE L1 -1788 4358 4195 6 943 932 176 11 23 chr4 47041090 47041264 -108588856 - B3 SINE B2 -44 172 1 6 943 590 236 0 0 chr4 47041557 47041667 -108588453 + PB1D9 SINE Alu 3 112 -8 7 943 186 43 0 0 chr4 47041669 47041692 -108588428 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 943 258 353 167 19 chr4 47041698 47042111 -108588009 + L1MD LINE L1 2435 2908 -3238 7 943 201 211 0 0 chr4 47044032 47044084 -108586036 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 943 395 234 74 9 chr4 47044213 47044321 -108585799 + PB1D10 SINE Alu 1 115 -2 7 943 714 119 0 167 chr4 47044446 47044601 -108585519 - B1_Mus1 SINE Alu -1 147 19 7 943 243 88 0 0 chr4 47044601 47044635 -108585485 + (CCA)n Simple_repeat Simple_repeat 2 35 0 7 943 483 273 8 8 chr4 47044730 47044859 -108585261 + RSINE1 SINE B4 30 158 -7 7 943 196 244 320 8 chr4 47045149 47045277 -108584843 + MIRb SINE MIR 86 253 -15 7 943 21 36 0 0 chr4 47045413 47045441 -108584679 + AT_rich Low_complexity Low_complexity 1 28 0 7 943 190 369 19 19 chr4 47045585 47045690 -108584430 + MIRm SINE MIR 72 176 -100 8 943 936 197 148 0 chr4 47047040 47047223 -108582897 + B3 SINE B2 5 214 -2 8 943 316 88 35 0 chr4 47047255 47047312 -108582808 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 8 943 272 313 118 53 chr4 47050555 47050724 -108579396 + MLT1J LTR MaLR 7 186 -326 8 943 189 125 17 35 chr4 47050856 47050914 -108579206 + A-rich Low_complexity Low_complexity 5 61 0 8 943 193 227 68 0 chr4 47051125 47051169 -108578951 - MIRm SINE MIR -108 168 122 8 943 472 306 82 6 chr4 47051326 47051497 -108578623 + ID_B1 SINE B4 23 206 -18 8 943 249 367 55 0 chr4 47051382 47051510 -108578610 + B1_Mm SINE Alu 6 140 -7 8 943 262 273 157 0 chr4 47052105 47052226 -108577894 - L3 LINE CR1 -12 4477 4338 8 944 471 250 34 25 chr4 47055334 47055453 -108574667 + B3 SINE B2 84 203 -13 8 944 228 281 225 0 chr4 47055500 47055589 -108574531 + PB1D9 SINE Alu 12 120 0 9 944 280 164 15 15 chr4 47055589 47055657 -108574463 + G-rich Low_complexity Low_complexity 4 71 0 9 944 373 271 131 0 chr4 47055661 47055783 -108574337 + RSINE1 SINE B4 11 148 -17 9 944 300 295 53 53 chr4 47056716 47056877 -108573243 + MLT1A1 LTR MaLR 201 404 -4 9 944 585 247 30 60 chr4 47058198 47058366 -108571754 + B4A SINE B4 1 163 -129 9 944 357 24 0 0 chr4 47058485 47058527 -108571593 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 944 1068 168 105 0 chr4 47059945 47060136 -108569984 + B3 SINE B2 1 211 -5 9 944 230 296 159 44 chr4 47060777 47060890 -108569230 + L2a LINE L2 3271 3396 -30 9 944 358 329 48 27 chr4 47061403 47061550 -108568570 + MER58B DNA MER1_type 192 341 0 9 944 324 333 178 26 chr4 47062651 47062791 -108567329 + B4 SINE B4 73 228 -64 9 944 943 224 54 0 chr4 47062791 47062996 -108567124 + B3 SINE B2 1 216 0 1 944 324 333 178 26 chr4 47062996 47063046 -108567074 + B4 SINE B4 229 292 0 9 944 243 229 196 62 chr4 47064480 47064592 -108565528 - MIRc SINE MIR -34 234 108 1 944 677 297 16 5 chr4 47065107 47065300 -108564820 + MIR SINE MIR 56 250 -12 1 944 294 291 7 16 chr4 47065320 47065416 -108564704 + B1F1 SINE Alu 47 139 -10 1 944 279 264 28 0 chr4 47065416 47065488 -108564632 + ID2 SINE ID 2 75 -8 1 944 940 222 14 19 chr4 47066028 47066235 -108563885 + B3 SINE B2 1 206 -10 1 944 963 265 24 82 chr4 47066361 47066670 -108563450 + RLTR28B LTR ERVL 2 288 -193 1 944 1328 86 40 0 chr4 47066670 47066844 -108563276 + B2_Mm2 SINE B2 1 181 -14 1 944 963 265 24 82 chr4 47066844 47066912 -108563208 + RLTR28B LTR ERVL 289 357 -124 1 944 341 225 100 0 chr4 47067056 47067136 -108562984 + B1_Mur2 SINE Alu 5 92 -57 1 944 223 240 0 0 chr4 47067161 47067211 -108562909 + GA-rich Low_complexity Low_complexity 2 51 0 1 944 660 167 0 33 chr4 47067248 47067428 -108562692 + GA-rich Low_complexity Low_complexity 3 176 0 1 944 486 0 0 0 chr4 47067429 47067483 -108562637 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 1 944 243 0 0 0 chr4 47068045 47068072 -108562048 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 944 1264 28 0 0 chr4 47068072 47068216 -108561904 - B1_Mm SINE Alu -3 144 1 1 944 897 175 136 11 chr4 47068709 47068900 -108561220 + B3 SINE B2 2 216 0 1 944 216 320 107 23 chr4 47069046 47069177 -108560943 + L2 LINE L2 2689 2830 -589 1 944 33 90 0 0 chr4 47070158 47070247 -108559873 + GC_rich Low_complexity Low_complexity 1 89 0 1 944 289 226 70 78 chr4 47070572 47070687 -108559433 + MER5A DNA MER1_type 38 151 -38 1 944 219 283 72 10 chr4 47070760 47070887 -108559233 - MIR SINE MIR -111 157 19 1 944 420 351 104 13 chr4 47070889 47071206 -108558914 - L2a LINE L2 -8 3418 3073 1 944 231 315 0 0 chr4 47071418 47071472 -108558648 + RSINE1 SINE B4 108 161 -4 1 944 859 193 21 0 chr4 47071484 47071629 -108558491 + B1_Mur1 SINE Alu 2 149 0 1 944 26 30 0 0 chr4 47071647 47071680 -108558440 + AT_rich Low_complexity Low_complexity 1 33 0 1 944 234 0 0 0 chr4 47071783 47071809 -108558311 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 944 317 308 120 0 chr4 47071984 47072101 -108558019 - ORR1E LTR MaLR -222 137 7 1 944 290 275 38 0 chr4 47072524 47072604 -108557516 - ID2 SINE ID 0 83 1 1 944 611 174 9 60 chr4 47072807 47072923 -108557197 - B1_Mus1 SINE Alu 0 148 39 1 944 367 186 111 56 chr4 47072833 47072941 -108557179 - MT2B LTR ERVL -323 278 165 1 944 333 192 57 19 chr4 47072986 47073185 -108556935 + (TA)n Simple_repeat Simple_repeat 1 206 0 1 944 232 242 0 21 chr4 47073185 47073282 -108556838 + (CATA)n Simple_repeat Simple_repeat 2 96 0 1 944 511 216 0 67 chr4 47073293 47073412 -108556708 + PB1D10 SINE Alu 3 113 -4 1 944 344 170 0 0 chr4 47073515 47073568 -108556552 + B3A SINE B2 1 53 -145 1 944 388 319 125 43 chr4 47073637 47073942 -108556178 - LTR33 LTR ERVL -116 399 70 1 944 330 311 144 0 chr4 47073967 47074099 -108556021 + MER5A1 DNA MER1_type 1 151 -15 1 944 7527 75 9 1 chr4 47074181 47075836 -108554284 - L1_Mus1 LINE L1 0 6567 4895 1 944 291 141 0 0 chr4 47075885 47075949 -108554171 + (A)n Simple_repeat Simple_repeat 1 64 0 1 944 1083 58 43 0 chr4 47075953 47076092 -108554028 + B1_Mm SINE Alu 3 147 0 1 944 337 280 120 44 chr4 47076326 47076379 -108553741 - B4A SINE B4 -95 197 1 1 944 682 191 15 31 chr4 47076379 47076509 -108553611 - B3A SINE B2 -70 128 1 1 944 423 280 70 60 chr4 47076511 47076950 -108553170 - L1M4b LINE L1 -2158 6584 6146 1 944 306 298 71 77 chr4 47076982 47077178 -108552942 - L1M4b LINE L1 -5299 2035 1841 1 944 730 204 15 0 chr4 47077179 47077316 -108552804 - B1_Mur1 SINE Alu -9 140 2 1 944 537 314 39 7 chr4 47077369 47077523 -108552597 - RSINE1 SINE B4 -5 160 2 1 944 283 206 95 14 chr4 47078420 47078494 -108551626 + BC1_Mm scRNA scRNA 2 81 -71 1 944 330 26 0 0 chr4 47078498 47078537 -108551583 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 944 396 329 29 7 chr4 47078542 47078680 -108551440 + Lx8 LINE L1 7173 7313 -160 1 944 530 218 0 52 chr4 47078685 47078801 -108551319 + ID_B1 SINE B4 109 218 -6 1 944 1012 254 14 0 chr4 47078810 47079023 -108551097 + B3 SINE B2 1 216 0 1 944 484 229 115 54 chr4 47079070 47079120 -108551000 - RMER5 LTR ERV1 0 534 485 1 944 2177 137 30 96 chr4 47079120 47079525 -108550595 - ORR1C1 LTR MaLR 0 378 1 1 944 484 229 115 54 chr4 47079525 47079622 -108550498 - RMER5 LTR ERV1 -50 484 378 1 944 739 258 0 66 chr4 47079657 47079694 -108550426 - RSINE1 SINE B4 0 165 138 1 944 375 23 0 0 chr4 47079694 47079738 -108550382 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 944 739 258 0 66 chr4 47079738 47079866 -108550254 - RSINE1 SINE B4 -28 137 11 1 944 800 256 35 30 chr4 47079877 47079898 -108550222 - RMER5 LTR ERV1 -134 400 382 1 944 3311 53 2 2 chr4 47079898 47080294 -108549826 + MTA_Mm LTR MaLR 1 396 0 1 944 800 256 35 30 chr4 47080294 47080502 -108549618 - RMER5 LTR ERV1 -153 381 170 1 944 2189 58 7 0 chr4 47080504 47080781 -108549339 - MTB LTR MaLR 0 400 122 1 944 2763 34 9 6 chr4 47080870 47081196 -108548924 + IAPLTR2b LTR ERVK 1 327 0 1 944 570 124 16 124 chr4 47081197 47081326 -108548794 + IAPEz-int LTR ERVK 9 123 -6358 1 944 234 267 0 0 chr4 47081326 47081371 -108548749 + RLTR27 LTR ERVK 231 275 -34 1 944 3559 51 1 16 chr4 47081371 47081949 -108548171 + IAPEz-int LTR ERVK 168 662 -5819 1 944 932 59 0 0 chr4 47081949 47082068 -108548052 + IAPEz-int LTR ERVK 1359 1477 -5004 1 944 1811 82 4 0 chr4 47082069 47082314 -108547806 + IAPEz-int LTR ERVK 2252 2497 -5183 1 944 13951 66 7 3 chr4 47082313 47084130 -108545990 + IAPEz-int LTR ERVK 4656 6479 -2 1 944 2744 37 9 6 chr4 47084132 47084458 -108545662 + IAPLTR2b LTR ERVK 1 327 0 1 944 910 85 38 15 chr4 47084889 47085020 -108545100 - MTA_Mm LTR MaLR -262 134 1 1 944 404 236 130 0 chr4 47085021 47085144 -108544976 - RMER5 LTR ERV1 -363 171 33 1 944 2912 146 21 40 chr4 47085401 47085922 -108544198 - RLTR24 LTR ERV1 -12 517 7 1 944 933 251 95 56 chr4 47085943 47086373 -108543747 + RLTR12B LTR ERVK 39 485 -43 1 944 303 240 12 48 chr4 47086543 47086627 -108543493 - PB1D10 SINE Alu -33 84 13 1 944 330 222 0 27 chr4 47086853 47086927 -108543193 + MER67B LTR ERV1 224 295 -366 1 944 534 54 0 0 chr4 47087005 47087079 -108543041 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 944 216 0 0 0 chr4 47087079 47087102 -108543018 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 944 1512 53 21 0 chr4 47087153 47087343 -108542777 + B2_Mm2 SINE B2 2 195 0 1 944 321 190 44 77 chr4 47088102 47088193 -108541927 + RLTR14-int LTR ERV1 490 577 -4740 1 944 252 0 0 0 chr4 47088311 47088339 -108541781 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 944 465 317 11 15 chr4 47089347 47089557 -108540563 + RLTR4_MM-int LTR ERV1 2229 2420 -2643 1 944 629 313 70 31 chr4 47089860 47090219 -108539901 + RLTR4_MM-int LTR ERV1 4077 4561 -3217 1 944 805 254 20 75 chr4 47090636 47090942 -108539178 + RLTR4_MM-int LTR ERV1 4874 5162 -2439 1 944 1569 129 5 0 chr4 47091127 47091351 -108538769 - URR1B DNA MER1_type 0 225 1 1 944 837 292 112 24 chr4 47092192 47092610 -108537510 + RLTR14-int LTR ERV1 4863 5317 0 1 944 569 280 79 13 chr4 47092664 47092816 -108537304 + B4A SINE B4 95 256 -36 1 944 225 0 0 0 chr4 47092819 47092844 -108537276 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 944 450 0 0 0 chr4 47092844 47092893 -108537227 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 944 280 340 32 0 chr4 47093243 47093337 -108536783 - MLT1G LTR MaLR -426 165 69 1 944 274 290 108 0 chr4 47093543 47093636 -108536484 - MLT1J LTR MaLR -176 336 234 1 944 892 175 0 7 chr4 47094088 47094232 -108535888 - B1_Mur1 SINE Alu 0 149 7 1 944 364 211 17 133 chr4 47094133 47094253 -108535867 - MT2B LTR ERVL -344 257 152 1 944 437 143 0 0 chr4 47095301 47095371 -108534749 - ORR1A2 LTR MaLR 0 374 305 1 944 803 142 7 84 chr4 47095376 47095530 -108534590 + B1_Mus1 SINE Alu 7 148 0 1 944 696 209 0 17 chr4 47095541 47095721 -108534399 + GA-rich Low_complexity Low_complexity 2 178 0 1 944 216 0 0 0 chr4 47095721 47095745 -108534375 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 944 1507 174 38 41 chr4 47095749 47096040 -108534080 - ORR1A2 LTR MaLR -57 317 27 1 944 3419 38 2 2 chr4 47096040 47096436 -108533684 + MTA_Mm LTR MaLR 1 396 0 1 944 1507 174 38 41 chr4 47096436 47096462 -108533658 - ORR1A2 LTR MaLR -348 26 1 1 944 5985 195 39 67 chr4 47096462 47097871 -108532249 - ORR1A2-int LTR MaLR 0 1370 1 1 944 2326 93 9 61 chr4 47097883 47098228 -108531892 - ORR1A2 LTR MaLR 0 327 1 1 944 1839 167 35 35 chr4 47098229 47098257 -108531863 - ORR1D1 LTR MaLR -8 366 339 1 944 234 0 0 0 chr4 47098257 47098283 -108531837 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 944 1839 167 35 35 chr4 47098283 47098620 -108531500 - ORR1D1 LTR MaLR -36 338 1 1 944 627 290 141 82 chr4 47099116 47099167 -108530953 - MER44D DNA MER2_type -26 679 638 1 944 1362 238 61 28 chr4 47099167 47099530 -108530590 - MTEa LTR MaLR -4 375 1 1 944 627 290 141 82 chr4 47099530 47099711 -108530409 - MER44D DNA MER2_type -68 637 436 1 944 369 0 0 0 chr4 47099711 47099752 -108530368 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 944 889 290 141 82 chr4 47099752 47100044 -108530076 - Tigger7 DNA MER2_type -270 435 123 1 944 2266 108 6 18 chr4 47100259 47100597 -108529523 + RLTR33 LTR ERVK 1 334 -344 1 944 3526 117 64 24 chr4 47100675 47101298 -108528822 - RMER6A LTR ERVK 0 756 109 1 944 426 20 0 0 chr4 47101519 47101570 -108528550 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 944 418 271 108 66 chr4 47101578 47101744 -108528376 - ID_B1 SINE B4 -12 212 40 1 944 1708 216 121 61 chr4 47102314 47102828 -108527292 + RCHARR1 DNA MER1_type 3 548 -426 1 944 781 262 0 6 chr4 47102828 47102989 -108527131 + B3A SINE B2 1 160 -38 1 944 225 108 0 0 chr4 47102995 47103032 -108527088 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 944 878 207 75 30 chr4 47103117 47103316 -108526804 - B3 SINE B2 -8 208 1 1 944 1687 240 45 5 chr4 47103316 47103743 -108526377 + RCHARR1 DNA MER1_type 519 962 -12 1 944 390 231 0 0 chr4 47103930 47104010 -108526110 + B1F1 SINE Alu 59 138 -11 1 944 450 252 96 16 chr4 47104176 47104301 -108525819 - RSINE1 SINE B4 0 165 31 1 944 405 0 0 0 chr4 47104363 47104408 -108525712 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 944 23 54 0 0 chr4 47104744 47104781 -108525339 + GC_rich Low_complexity Low_complexity 1 37 0 1 944 305 288 25 0 chr4 47106887 47106967 -108523153 - MER44D DNA MER2_type -8 697 616 1 944 520 295 68 138 chr4 47106958 47107269 -108522851 - Tigger7 DNA MER2_type -2195 296 8 1 944 214 290 113 0 chr4 47108256 47108318 -108521802 + MER5B DNA MER1_type 36 104 -74 1 944 626 225 92 33 chr4 47109605 47109719 -108520401 - ORR1D1 LTR MaLR -18 356 245 1 944 180 0 0 0 chr4 47109719 47109739 -108520381 + (CAGG)n Simple_repeat Simple_repeat 3 22 0 2 944 626 225 92 33 chr4 47109739 47109808 -108520312 - ORR1D1 LTR MaLR -130 244 163 1 944 307 204 21 83 chr4 47109827 47109923 -108520197 - L1MEe LINE L1 -3994 860 771 2 944 580 198 26 0 chr4 47109930 47110046 -108520074 - PB1D7 SINE Alu -1 119 1 2 944 556 254 41 21 chr4 47110064 47110209 -108519911 - ID_B1 SINE B4 0 224 77 2 944 605 309 45 0 chr4 47110314 47110515 -108519605 - MLT1F LTR MaLR -29 519 310 2 944 256 176 29 0 chr4 47110621 47110689 -108519431 + CT-rich Low_complexity Low_complexity 1 70 0 2 944 725 210 94 22 chr4 47111359 47111539 -108518581 - B3A SINE B2 -4 194 2 2 944 630 255 180 0 chr4 47112170 47112331 -108517789 - ID_B1 SINE B4 -6 218 29 2 944 2261 40 3 120 chr4 47112372 47112746 -108517374 + RLTR10 LTR ERVK 1 330 -60 2 944 249 102 0 0 chr4 47112748 47112797 -108517323 + RLTR10 LTR ERVK 259 307 -83 2 944 922 115 51 0 chr4 47112802 47112958 -108517162 + RLTR10 LTR ERVK 227 390 0 2 944 3908 34 15 6 chr4 47112968 47113838 -108516282 + RLTR10-int LTR ERVK 41 992 -995 2 944 8375 28 5 1 chr4 47114119 47115113 -108515007 + RLTR10-int LTR ERVK 990 1987 0 2 944 2261 40 3 120 chr4 47115113 47115487 -108514633 + RLTR10 LTR ERVK 1 330 -60 2 944 249 102 0 0 chr4 47115489 47115538 -108514582 + RLTR10 LTR ERVK 259 307 -83 2 944 922 115 51 0 chr4 47115543 47115699 -108514421 + RLTR10 LTR ERVK 227 390 0 2 944 180 298 421 8 chr4 47115805 47115915 -108514205 + L2a LINE L2 3269 3424 -2 2 944 191 319 34 42 chr4 47116547 47116665 -108513455 - L2c LINE L2 -238 3149 3033 2 944 6718 62 14 2 chr4 47117983 47118840 -108511280 + L1_Mus3 LINE L1 5766 6632 -6 2 944 541 129 20 10 chr4 47118844 47118946 -108511174 + A-rich Low_complexity Low_complexity 2 104 0 2 944 221 347 56 80 chr4 47119017 47119230 -108510890 + MIRb SINE MIR 1 208 -60 2 944 228 300 54 70 chr4 47119318 47119447 -108510673 + MIRb SINE MIR 139 265 -3 2 944 263 296 92 56 chr4 47120332 47120658 -108509462 - MTE2a LTR MaLR 0 379 25 2 944 987 229 5 32 chr4 47120741 47120958 -108509162 + B3 SINE B2 3 213 -3 2 944 660 287 6 6 chr4 47120974 47121156 -108508964 - B3A SINE B2 -16 182 1 2 944 324 0 0 0 chr4 47121820 47121856 -108508264 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 944 28 29 0 0 chr4 47121933 47121968 -108508152 + AT_rich Low_complexity Low_complexity 1 35 0 2 944 342 0 0 0 chr4 47122062 47122100 -108508020 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 944 187 350 136 8 chr4 47123475 47123593 -108506527 - MIRb SINE MIR -79 189 57 2 944 213 39 0 0 chr4 47123634 47123660 -108506460 + (TCC)n Simple_repeat Simple_repeat 3 28 0 2 944 549 227 113 8 chr4 47123660 47123793 -108506327 - B1_Mur3 SINE Alu 0 149 3 2 944 759 217 7 14 chr4 47123870 47124015 -108506105 - RSINE1 SINE B4 -11 154 11 2 944 216 250 0 0 chr4 47124725 47124769 -108505351 - ID2 SINE ID -12 71 28 2 944 203 288 0 0 chr4 47125359 47125374 -108504746 + polypyrimidine Low_complexity Low_complexity 46 60 0 2 944 342 0 0 0 chr4 47125374 47125412 -108504708 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 944 203 288 0 0 chr4 47125412 47125455 -108504665 + polypyrimidine Low_complexity Low_complexity 3 45 0 2 944 312 27 0 0 chr4 47125599 47125636 -108504484 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 944 272 286 27 40 chr4 47125636 47125773 -108504347 - MIRc SINE MIR -59 149 12 2 944 233 261 107 8 chr4 47126164 47126295 -108503825 - Tigger15a DNA TcMar -332 383 240 2 944 798 276 118 155 chr4 47126819 47126971 -108503149 + MER82 DNA MER2_type 1 190 -463 2 944 432 51 0 0 chr4 47126971 47127030 -108503090 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 944 798 276 118 155 chr4 47127030 47127194 -108502926 + MER82 DNA MER2_type 191 343 -310 2 944 381 22 0 0 chr4 47127194 47127240 -108502880 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 944 798 276 118 155 chr4 47127240 47127256 -108502864 + MER82 DNA MER2_type 344 352 -301 2 944 722 253 0 7 chr4 47127256 47127403 -108502717 - RSINE1 SINE B4 -19 146 1 2 944 798 276 118 155 chr4 47127403 47127464 -108502656 + MER82 DNA MER2_type 353 381 -272 2 944 2044 109 23 64 chr4 47127464 47127807 -108502313 - ORR1A4 LTR MaLR 0 329 1 2 944 798 276 118 155 chr4 47127807 47127951 -108502169 + MER82 DNA MER2_type 382 520 -133 2 944 267 328 56 39 chr4 47128099 47128277 -108501843 - MamGypLTR3 LTR Gypsy 0 839 659 2 944 227 239 14 29 chr4 47128664 47128733 -108501387 + GA-rich Low_complexity Low_complexity 3 70 0 2 944 514 241 147 0 chr4 47129092 47129208 -108500912 + RSINE1 SINE B4 2 134 -31 2 944 2274 149 86 12 chr4 47129260 47129681 -108500439 - RLTR11A LTR ERVK 0 528 77 2 944 1112 80 0 0 chr4 47129894 47130032 -108500088 + B1_Mus1 SINE Alu 2 139 -9 2 944 302 0 0 26 chr4 47130032 47130071 -108500049 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 944 493 312 8 0 chr4 47131158 47131286 -108498834 - RSINE1 SINE B4 -33 132 4 2 944 24 0 0 0 chr4 47132546 47132570 -108497550 + AT_rich Low_complexity Low_complexity 1 24 0 2 944 352 210 300 46 chr4 47132575 47132603 -108497517 - RSINE1 SINE B4 0 165 126 2 944 270 0 0 0 chr4 47132603 47132633 -108497487 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 944 297 0 0 0 chr4 47132633 47132665 -108497455 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 944 352 210 300 46 chr4 47132665 47132765 -108497355 - RSINE1 SINE B4 -40 125 4 2 944 210 244 0 0 chr4 47132772 47132813 -108497307 + ID4 SINE ID 9 49 -34 2 944 915 115 72 0 chr4 47133000 47133139 -108496981 - URR1A DNA MER1_type -1 225 77 2 944 438 273 35 97 chr4 47133139 47133222 -108496898 + CYRA11_Mm Unknown Y-chromosome 173 380 -237 2 944 498 171 0 0 chr4 47134048 47134124 -108495996 + PB1D10 SINE Alu 3 78 -39 2 944 598 275 154 8 chr4 47134283 47134529 -108495591 + B4A SINE B4 3 284 -8 2 944 35 41 0 0 chr4 47136104 47136153 -108493967 + AT_rich Low_complexity Low_complexity 1 49 0 2 944 1012 223 14 23 chr4 47136300 47136520 -108493600 + ID_B1 SINE B4 2 219 -5 2 944 357 259 14 92 chr4 47136820 47137007 -108493113 - B4A SINE B4 0 165 7 2 944 882 303 43 18 chr4 47137723 47138052 -108492068 - MER54A LTR ERVL -34 867 531 2 944 660 161 0 58 chr4 47138115 47138306 -108491814 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 944 195 42 0 0 chr4 47138341 47138365 -108491755 + (TGGG)n Simple_repeat Simple_repeat 3 26 0 2 944 753 242 23 176 chr4 47138369 47138388 -108491732 - MT2A LTR ERVL -26 558 537 2 944 213 39 0 0 chr4 47138388 47138414 -108491706 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2 944 1426 178 175 129 chr4 47138414 47138863 -108491257 - MT2A LTR ERVL -48 536 6 2 944 430 272 97 136 chr4 47138884 47139304 -108490816 - RMER2 LTR ERV1 -26 541 1 2 944 359 323 194 15 chr4 47139378 47139579 -108490541 - MER54A LTR ERVL -508 393 157 2 944 464 338 76 5 chr4 47140168 47140391 -108489729 - MLT1E LTR MaLR -33 620 382 2 944 313 189 147 13 chr4 47140401 47140476 -108489644 + MLT1E1 LTR MaLR 314 398 -256 2 944 365 244 59 30 chr4 47140701 47140836 -108489284 - L1MEg LINE L1 -4062 2022 1884 2 944 282 56 0 0 chr4 47140836 47140872 -108489248 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 2 944 862 100 66 44 chr4 47140875 47141011 -108489109 - B1_Mus1 SINE Alu -4 144 6 2 944 234 324 28 9 chr4 47141100 47141206 -108488914 - MER5A1 DNA MER1_type -30 136 29 2 944 294 250 12 36 chr4 47141335 47141418 -108488702 - B1F SINE Alu -57 92 12 2 944 1163 202 9 0 chr4 47142021 47142234 -108487886 + B3 SINE B2 2 216 0 2 944 204 40 0 0 chr4 47143768 47143793 -108486327 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 944 230 322 111 0 chr4 47143815 47143905 -108486215 + PB1D10 SINE Alu 2 101 -16 2 944 357 24 0 0 chr4 47143983 47144025 -108486095 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2 944 540 225 13 15 chr4 47144533 47144682 -108485438 + B1F SINE Alu 1 148 -1 2 944 257 235 50 30 chr4 47145652 47145753 -108484367 - MIR3 SINE MIR -25 183 81 2 944 1124 262 66 63 chr4 47145868 47146024 -108484096 - MTE2a LTR MaLR -15 364 204 2 944 2875 130 151 17 chr4 47146024 47146540 -108483580 - RMER4B LTR ERVK 0 585 1 2 944 1124 262 66 63 chr4 47146540 47146746 -108483374 - MTE2a LTR MaLR -176 203 1 2 944 330 26 0 0 chr4 47147438 47147477 -108482643 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 944 589 116 53 15 chr4 47147646 47147908 -108482212 + (TAGA)n Simple_repeat Simple_repeat 1 271 0 2 944 700 298 14 11 chr4 47147937 47148223 -108481897 - L1MA4 LINE L1 -393 5907 5586 2 944 774 164 3 26 chr4 47148262 47148408 -108481712 + B1_Mur2 SINE Alu 7 149 0 2 944 379 219 198 0 chr4 47148600 47148696 -108481424 - PB1D9 SINE Alu -5 115 1 2 944 216 307 155 17 chr4 47148729 47148845 -108481275 - MIRb SINE MIR 0 268 137 2 944 470 258 83 8 chr4 47148880 47149001 -108481119 - RSINE1 SINE B4 -35 130 1 2 944 263 292 123 47 chr4 47151315 47151527 -108478593 + MLT1J LTR MaLR 156 383 -129 2 944 257 247 43 53 chr4 47151766 47151860 -108478260 - Lx8 LINE L1 -2 7471 7379 2 944 249 365 10 0 chr4 47151916 47152012 -108478108 - L2b LINE L2 -262 3113 3017 2 944 201 363 77 0 chr4 47153560 47153651 -108476469 + MIRm SINE MIR 173 270 -6 2 944 205 207 33 49 chr4 47153909 47153970 -108476150 - L2 LINE L2 -1406 2013 1954 2 944 350 253 139 25 chr4 47154171 47154329 -108475791 - MIR3 SINE MIR -14 194 19 2 944 450 0 0 0 chr4 47154626 47154676 -108475444 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 944 1094 242 44 22 chr4 47154847 47155033 -108475087 - B4 SINE B4 -11 281 87 2 944 323 45 0 22 chr4 47155033 47155079 -108475041 + (TTG)n Simple_repeat Simple_repeat 3 47 0 2 944 1094 242 44 22 chr4 47155079 47155166 -108474954 - B4 SINE B4 -206 86 2 2 944 249 325 49 16 chr4 47155168 47155290 -108474830 - L1MB2 LINE L1 -43 6128 6003 2 944 669 25 0 0 chr4 47155742 47155821 -108474299 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 944 423 0 0 0 chr4 47155821 47155867 -108474253 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 944 898 249 149 65 chr4 47155945 47156362 -108473758 - Lx8 LINE L1 -8 7465 7014 2 944 252 276 74 41 chr4 47156419 47156580 -108473540 - MIRc SINE MIR -15 193 21 3 944 393 283 30 0 chr4 47156635 47156734 -108473386 + ID_B1 SINE B4 112 213 -11 3 944 3005 263 78 8 chr4 47157497 47158466 -108471654 + MERVK26-int LTR ERVK 4680 5716 -1203 3 944 4259 250 29 8 chr4 47158463 47159475 -108470645 + MERVK26-int LTR ERVK 5885 6917 -2 3 944 2210 192 86 50 chr4 47159478 47159976 -108470144 + RMER20A LTR ERVK 1 516 0 3 944 466 319 40 47 chr4 47160361 47160600 -108469520 + MTE2a LTR MaLR 1 212 -207 3 944 572 259 7 0 chr4 47160611 47160746 -108469374 + MERVK26-int LTR ERVK 6547 6682 -237 3 944 1233 41 7 0 chr4 47160782 47160928 -108469192 - B1_Mus2 SINE Alu 0 147 1 3 944 905 193 29 12 chr4 47160930 47161103 -108469017 + MTE2a LTR MaLR 204 379 0 3 944 1063 199 43 10 chr4 47161162 47161370 -108468750 + B3 SINE B2 1 215 -1 3 944 573 254 97 0 chr4 47161461 47161595 -108468525 + B1_Mur2 SINE Alu 1 147 -2 3 944 225 362 53 60 chr4 47161786 47161936 -108468184 + B1F2 SINE Alu 1 149 0 3 944 321 234 0 105 chr4 47162496 47162601 -108467519 + L1ME4a LINE L1 6031 6124 0 3 944 211 287 57 48 chr4 47163510 47163648 -108466472 + MIRb SINE MIR 51 186 -76 3 944 185 303 29 57 chr4 47164032 47164102 -108466018 + L2c LINE L2 3111 3178 -209 3 944 307 250 8 128 chr4 47165277 47165320 -108464800 + MT2B2 LTR ERVL 131 157 -427 3 944 434 271 10 0 chr4 47165320 47165416 -108464704 + B1F SINE Alu 3 99 -50 3 944 318 202 0 2 chr4 47165498 47165563 -108464557 + B1F SINE Alu 84 149 0 3 944 234 80 0 57 chr4 47165719 47165772 -108464348 + (CCCCG)n Simple_repeat Simple_repeat 5 54 0 3 944 318 277 59 26 chr4 47165781 47165933 -108464187 - L1MB7 LINE L1 -185 5999 5843 3 944 599 295 0 0 chr4 47165957 47166096 -108464024 + ID_B1 SINE B4 74 212 -12 3 944 4551 73 151 1 chr4 47166667 47167325 -108462795 + L1_Mus3 LINE L1 5883 6638 0 3 944 422 299 97 45 chr4 47167346 47167500 -108462620 + RSINE1 SINE B4 4 165 0 3 944 694 221 15 0 chr4 47167655 47167791 -108462329 - B1_Mur2 SINE Alu -7 142 5 3 944 313 282 174 41 chr4 47167793 47168374 -108461746 + L1MA5 LINE L1 2300 2978 -2869 3 944 1899 186 59 22 chr4 47168378 47168774 -108461346 + MTD LTR MaLR 8 405 -14 3 944 2610 304 147 62 chr4 47168778 47169376 -108460744 + L1MA5 LINE L1 2956 3665 -2215 3 944 432 0 0 0 chr4 47169376 47169424 -108460696 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 944 2610 304 144 61 chr4 47169424 47169500 -108460620 + L1MA5 LINE L1 3666 3748 -2552 3 944 389 219 0 64 chr4 47169500 47169578 -108460542 + B1_Mur2 SINE Alu 67 139 -10 3 944 2610 304 144 61 chr4 47169578 47171552 -108458568 + L1MA5 LINE L1 3749 5927 -373 3 944 2039 78 25 24 chr4 47171686 47172051 -108458069 + RLTR10A LTR ERVK 1 314 -45 3 944 1111 82 0 0 chr4 47172222 47172356 -108457764 - B1_Mus1 SINE Alu -13 135 2 3 944 666 185 15 30 chr4 47172428 47172562 -108457558 - ID_B1 SINE B4 -9 215 84 3 944 489 298 112 42 chr4 47173265 47173479 -108456641 + B4 SINE B4 1 229 -63 3 944 717 181 0 153 chr4 47173721 47173891 -108456229 - B1_Mur4 SINE Alu -6 144 1 3 944 201 229 0 0 chr4 47174565 47174613 -108455507 + GA-rich Low_complexity Low_complexity 124 171 0 3 944 459 125 0 0 chr4 47174606 47174678 -108455442 + (GGGGA)n Simple_repeat Simple_repeat 4 75 0 3 944 630 0 0 0 chr4 47176142 47176216 -108453904 - B1_Mur4 SINE Alu 0 150 77 3 944 207 0 0 0 chr4 47176226 47176249 -108453871 + (T)n Simple_repeat Simple_repeat 1 23 0 3 944 814 263 36 65 chr4 47176332 47176580 -108453540 + RMER5 LTR ERV1 1 241 -293 3 944 930 260 84 7 chr4 47177167 47177465 -108452655 + RMER5 LTR ERV1 204 524 -10 3 944 641 191 144 48 chr4 47177504 47177691 -108452429 - B3 SINE B2 -11 205 1 3 944 1386 82 0 3 chr4 47177780 47178124 -108451996 + (TGG)n Simple_repeat Simple_repeat 1 343 0 3 944 299 306 0 0 chr4 47178156 47178228 -108451892 - ID4 SINE ID -10 73 2 3 944 484 241 37 15 chr4 47178241 47178376 -108451744 - B1F SINE Alu -8 141 4 3 944 433 84 28 0 chr4 47178759 47178830 -108451290 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 3 944 573 88 0 0 chr4 47178834 47178914 -108451206 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 944 234 0 0 0 chr4 47178914 47178940 -108451180 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 944 485 285 76 8 chr4 47178946 47179077 -108451043 - RSINE1 SINE B4 -24 141 2 3 944 513 0 0 0 chr4 47179107 47179164 -108450956 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 944 1253 54 0 0 chr4 47179276 47179423 -108450697 + B1_Mm SINE Alu 1 147 0 3 944 195 42 0 0 chr4 47179423 47179447 -108450673 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 3 944 412 283 96 68 chr4 47179450 47179742 -108450378 + L1MEf LINE L1 667 966 -5234 3 944 360 305 241 14 chr4 47179849 47180210 -108449910 + L1MC3 LINE L1 7325 7766 -19 3 944 889 294 126 35 chr4 47180240 47180818 -108449302 + L1ME2 LINE L1 5494 6124 -40 3 944 376 300 14 48 chr4 47180861 47181008 -108449112 + B1F SINE Alu 5 146 -3 3 944 404 283 108 70 chr4 47182035 47182338 -108447782 - MTEb LTR MaLR -1 378 7 3 944 444 340 116 42 chr4 47182972 47183282 -108446838 + ORR1E LTR MaLR 1 333 -26 3 944 943 258 80 126 chr4 47183334 47183724 -108446396 + MTE2a LTR MaLR 8 379 0 3 944 189 51 0 71 chr4 47183731 47183773 -108446347 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 3 944 772 190 143 39 chr4 47183783 47183975 -108446145 - MTD LTR MaLR 0 419 206 3 944 1199 63 0 28 chr4 47183975 47184161 -108445959 + (TTCC)n Simple_repeat Simple_repeat 1 187 -28 3 944 1199 63 0 28 chr4 47184171 47184197 -108445923 + (TTCC)n Simple_repeat Simple_repeat 188 215 0 3 944 544 274 42 148 chr4 47184806 47185042 -108445078 - MTD LTR MaLR -208 211 1 3 944 2661 77 29 5 chr4 47185043 47185423 -108444697 - RLTR9D LTR ERVK -14 389 1 3 944 246 294 143 0 chr4 47185433 47185552 -108444568 - MIRb SINE MIR -85 183 48 3 945 575 165 278 59 chr4 47186084 47186368 -108443752 - RLTR20B3 LTR ERVK -231 346 1 3 945 262 240 37 85 chr4 47186548 47186630 -108443490 - ID4_ SINE ID 0 83 6 3 945 768 245 13 0 chr4 47186657 47186808 -108443312 - B3A SINE B2 -38 160 8 3 945 885 243 68 68 chr4 47186892 47186926 -108443194 - B4A SINE B4 0 292 271 3 945 354 23 0 0 chr4 47186926 47186969 -108443151 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 945 885 243 68 68 chr4 47186969 47187226 -108442894 - B4A SINE B4 -22 270 1 3 945 368 296 37 7 chr4 47187234 47187370 -108442750 - B1F SINE Alu -9 140 1 3 945 356 397 44 18 chr4 47187568 47187796 -108442324 - L1ME3B LINE L1 -337 5903 5670 3 945 222 37 0 0 chr4 47187796 47187823 -108442297 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 945 1259 240 183 6 chr4 47187828 47188184 -108441936 + MTD LTR MaLR 1 419 0 3 945 911 311 60 27 chr4 47188205 47188356 -108441764 + MLT1A0 LTR MaLR 1 147 -218 3 945 2698 61 3 0 chr4 47188356 47188682 -108441438 + ORR1A2 LTR MaLR 1 327 0 3 945 911 311 60 27 chr4 47188682 47188831 -108441289 + MLT1A0 LTR MaLR 148 311 -54 3 945 303 71 0 0 chr4 47189065 47189107 -108441013 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 945 621 230 42 39 chr4 47189119 47189324 -108440796 - MTD LTR MaLR -166 255 5 3 945 210 185 18 36 chr4 47189475 47189531 -108440589 + T-rich Low_complexity Low_complexity 2 56 0 3 945 261 282 170 36 chr4 47189808 47190043 -108440077 + L2c LINE L2 3050 3349 -77 3 945 242 172 57 15 chr4 47191963 47192029 -108438091 + MIRc SINE MIR 72 136 -140 3 945 346 238 114 45 chr4 47193022 47193154 -108436966 - L1MEe LINE L1 -4008 846 706 3 945 611 133 0 9 chr4 47193154 47193260 -108436860 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 3 945 1204 82 0 0 chr4 47193268 47193415 -108436705 - B1_Mus2 SINE Alu 0 147 1 3 945 393 262 235 12 chr4 47193516 47193678 -108436442 - B3A SINE B2 0 198 1 3 945 306 0 0 0 chr4 47193824 47193858 -108436262 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 945 630 278 29 6 chr4 47193932 47194102 -108436018 - B4 SINE B4 -118 174 1 3 945 193 368 62 10 chr4 47194206 47194302 -108435818 - MIRb SINE MIR -145 123 23 3 945 3136 14 0 3 chr4 47194339 47194686 -108435434 + ORR1A0 LTR MaLR 1 346 0 3 945 398 235 88 69 chr4 47195118 47195185 -108434935 + MER53 DNA hAT 25 87 -106 3 945 2116 153 50 79 chr4 47195185 47195640 -108434480 - RMER10A LTR ERVL 0 442 1 3 945 398 235 88 69 chr4 47195640 47195681 -108434439 + MER53 DNA hAT 88 124 -69 3 945 207 0 0 0 chr4 47195681 47195704 -108434416 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 945 398 235 88 69 chr4 47195704 47195754 -108434366 + MER53 DNA hAT 125 187 -6 3 945 342 98 0 0 chr4 47196028 47196079 -108434041 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 945 513 47 0 0 chr4 47196079 47196142 -108433978 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 945 181 263 172 40 chr4 47196228 47196327 -108433793 - L2 LINE L2 -973 2446 2335 3 945 202 273 0 0 chr4 47196834 47196878 -108433242 + MIRm SINE MIR 216 259 -17 3 945 262 264 42 0 chr4 47197597 47197669 -108432451 + L2a LINE L2 3338 3412 -14 3 945 235 72 23 23 chr4 47197670 47197713 -108432407 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 3 945 571 241 290 0 chr4 47198206 47198368 -108431752 + ID_B1 SINE B4 1 209 -15 3 945 606 28 0 0 chr4 47198374 47198446 -108431674 + (GGA)n Simple_repeat Simple_repeat 3 74 0 3 945 402 21 0 0 chr4 47198446 47198493 -108431627 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 3 945 215 296 0 0 chr4 47199032 47199086 -108431034 + MIRc SINE MIR 111 164 -104 3 945 195 318 30 53 chr4 47199914 47200032 -108430088 - MIR SINE MIR -102 174 55 3 945 205 344 11 53 chr4 47200574 47200669 -108429451 - MIRc SINE MIR -12 256 166 3 945 881 309 39 45 chr4 47201536 47201895 -108428225 + ORR1E LTR MaLR 1 357 -2 3 945 260 232 333 8 chr4 47202039 47202165 -108427955 - MER5A DNA MER1_type -22 167 1 3 945 567 225 168 92 chr4 47202780 47202982 -108427138 + MTEa LTR MaLR 111 341 -38 3 945 965 93 0 62 chr4 47202982 47203142 -108426978 - L1_Mus1 LINE L1 0 6567 6418 3 945 567 225 168 92 chr4 47203142 47203189 -108426931 + MTEa LTR MaLR 342 379 0 3 945 323 360 142 12 chr4 47203241 47203578 -108426542 + L1M2 LINE L1 4662 5042 -1101 4 945 295 310 57 71 chr4 47203604 47203734 -108426386 - L1M3 LINE L1 -1642 4498 4368 4 945 474 205 25 67 chr4 47203734 47203854 -108426266 + PB1D10 SINE Alu 1 115 -2 4 945 295 310 57 71 chr4 47203854 47204077 -108426043 - L1M3 LINE L1 -1773 4367 4150 4 945 290 283 102 50 chr4 47204717 47204925 -108425195 - MIR SINE MIR -48 214 2 4 945 671 303 47 14 chr4 47204972 47205186 -108424934 - MTEa LTR MaLR -157 222 2 4 945 235 261 46 0 chr4 47205250 47205315 -108424805 - MER5A1 DNA MER1_type -90 76 9 4 945 198 114 29 0 chr4 47206331 47206366 -108423754 - MIR SINE MIR -92 116 81 4 945 471 216 10 10 chr4 47207190 47207288 -108422832 - MTE2b LTR MaLR -281 98 1 4 945 288 255 137 39 chr4 47207373 47207475 -108422645 + PB1D10 SINE Alu 3 114 -3 4 945 548 325 82 27 chr4 47207635 47208058 -108422062 + MLT1H1 LTR MaLR 1 555 0 4 945 180 182 0 0 chr4 47208081 47208125 -108421995 + A-rich Low_complexity Low_complexity 2 45 0 4 945 476 315 31 0 chr4 47208152 47208282 -108421838 - RSINE1 SINE B4 -28 137 4 4 945 448 299 73 25 chr4 47209047 47209322 -108420798 - L1ME4a LINE L1 -239 5885 5598 4 945 489 34 0 0 chr4 47209838 47209897 -108420223 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 4 945 537 271 19 103 chr4 47210906 47211120 -108419000 - B3A SINE B2 0 198 3 4 945 3360 43 5 0 chr4 47211665 47212059 -108418061 - MTA_Mm LTR MaLR 0 396 1 4 945 237 310 0 33 chr4 47213400 47213490 -108416630 - MIR SINE MIR -107 155 69 4 945 452 343 76 67 chr4 47213980 47214324 -108415796 - LTR16E2 LTR ERVL -207 361 15 4 945 398 264 23 0 chr4 47214419 47214506 -108415614 + MER44D DNA MER2_type 1 89 -616 4 945 322 264 23 11 chr4 47214520 47214608 -108415512 + MER44D DNA MER2_type 362 450 -255 4 945 198 0 0 0 chr4 47214657 47214679 -108415441 + (GGA)n Simple_repeat Simple_repeat 2 23 0 4 945 635 287 38 67 chr4 47214696 47214935 -108415185 + MER44D DNA MER2_type 469 699 -6 4 945 340 253 12 0 chr4 47215417 47215500 -108414620 - ERVL-E-int LTR ERVL -752 4915 4832 4 945 368 237 212 0 chr4 47215633 47215751 -108414369 + MER2 DNA MER2_type 4 146 -199 4 945 291 165 12 25 chr4 47215799 47215880 -108414240 + Lx9 LINE L1 7538 7617 -27 4 945 318 277 158 23 chr4 47215881 47216014 -108414106 + MER2 DNA MER2_type 195 345 0 4 945 602 271 176 37 chr4 47216406 47216664 -108413456 - B4A SINE B4 0 292 2 4 945 263 202 55 184 chr4 47216952 47217061 -108413059 - MTD LTR MaLR -134 285 191 4 945 354 374 118 20 chr4 47217286 47217684 -108412436 + ERVL-E-int LTR ERVL 2326 2762 -2905 4 945 451 285 39 59 chr4 47218087 47218240 -108411880 - LTR16C LTR ERVL -336 153 4 4 945 250 361 118 68 chr4 47219600 47219742 -108410378 - MER102b DNA MER1_type -48 293 141 4 945 673 280 37 11 chr4 47219742 47219930 -108410190 - B3A SINE B2 -4 194 2 4 945 250 361 118 68 chr4 47219930 47220066 -108410054 - MER102b DNA MER1_type -201 140 1 4 945 187 296 37 0 chr4 47220646 47220700 -108409420 + MIRc SINE MIR 77 132 -136 4 945 203 267 21 32 chr4 47221019 47221112 -108409008 + (CGGGG)n Simple_repeat Simple_repeat 1 92 0 4 945 293 228 161 11 chr4 47221966 47222059 -108408061 + MIR SINE MIR 29 135 -127 4 945 194 273 36 0 chr4 47222890 47222945 -108407175 - MIR SINE MIR -194 68 12 4 945 525 71 0 0 chr4 47223234 47223304 -108406816 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 4 945 550 236 0 0 chr4 47223320 47223426 -108406694 + PB1D10 SINE Alu 2 107 -10 4 945 678 339 90 9 chr4 47223626 47224049 -108406071 + L1ME1 LINE L1 5577 6033 -146 4 945 271 353 17 0 chr4 47225560 47225679 -108404441 - L1MC LINE L1 -2510 5532 5412 4 945 201 242 16 0 chr4 47225683 47225745 -108404375 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 945 482 250 73 138 chr4 47225747 47225993 -108404127 - B4 SINE B4 -58 234 5 4 945 1026 90 7 0 chr4 47226063 47226208 -108403912 + B1_Mus1 SINE Alu 1 146 -2 4 945 695 221 26 0 chr4 47226258 47226412 -108403708 - B4A SINE B4 -77 215 58 4 945 408 299 78 0 chr4 47226462 47226616 -108403504 - L1M4 LINE L1 -578 5596 5431 4 945 220 296 49 0 chr4 47227106 47227187 -108402933 + L2b LINE L2 3290 3374 -1 4 945 24 67 0 0 chr4 47227665 47227710 -108402410 + AT_rich Low_complexity Low_complexity 1 45 0 4 945 288 186 0 0 chr4 47227746 47227805 -108402315 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 945 491 227 120 7 chr4 47227929 47228071 -108402049 - RSINE1 SINE B4 -4 161 4 4 945 410 281 24 12 chr4 47228596 47228762 -108401358 + (CAACT)n Simple_repeat Simple_repeat 2 169 0 4 945 342 0 0 0 chr4 47229341 47229379 -108400741 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 945 559 220 54 47 chr4 47229409 47229557 -108400563 - B4 SINE B4 -32 260 112 4 945 191 105 0 50 chr4 47229656 47229696 -108400424 + A-rich Low_complexity Low_complexity 4 41 0 4 945 677 152 35 35 chr4 47229736 47229879 -108400241 - B1_Mm SINE Alu 0 147 5 4 945 808 57 203 8 chr4 47229889 47230012 -108400108 - B1_Mus1 SINE Alu -1 147 1 4 945 489 267 0 0 chr4 47230857 47230973 -108399147 + PB1D10 SINE Alu 1 116 -1 4 945 413 138 12 0 chr4 47230975 47231055 -108399065 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 945 337 244 44 0 chr4 47231620 47231710 -108398410 + ID_B1 SINE B4 3 96 -128 4 945 271 264 83 0 chr4 47231721 47231793 -108398327 + ID_B1 SINE B4 143 220 -4 4 945 231 351 53 0 chr4 47231970 47232064 -108398056 - MIRm SINE MIR -151 125 27 4 945 240 197 0 32 chr4 47232233 47232296 -108397824 + A-rich Low_complexity Low_complexity 3 63 0 4 945 1219 273 56 14 chr4 47232353 47232710 -108397410 - Lx7 LINE L1 -388 7308 6937 4 945 214 245 21 31 chr4 47232770 47232908 -108397212 + (TATATG)n Simple_repeat Simple_repeat 1 136 0 4 945 339 25 0 0 chr4 47232991 47233031 -108397089 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 945 354 260 104 0 chr4 47233180 47233276 -108396844 + MER5A1 DNA MER1_type 16 121 -45 4 945 472 276 224 25 chr4 47233356 47233709 -108396411 + MLT1D LTR MaLR 1 423 -82 4 945 275 329 0 0 chr4 47234127 47234200 -108395920 + MIR3 SINE MIR 95 167 -41 4 945 463 286 52 48 chr4 47235473 47235718 -108394402 + MIRb SINE MIR 7 257 -11 4 945 239 338 12 12 chr4 47236407 47236488 -108393632 - L2b LINE L2 -17 3358 3278 4 945 412 259 8 33 chr4 47236570 47236690 -108393430 + PB1D10 SINE Alu 1 117 0 4 945 450 0 0 0 chr4 47236703 47236753 -108393367 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 945 656 219 89 13 chr4 47236882 47237039 -108393081 + B3 SINE B2 48 216 0 4 945 5047 111 24 0 chr4 47237321 47238039 -108392081 - RMER19A LTR ERVK -2 735 1 4 945 274 247 143 10 chr4 47238722 47238820 -108391300 + MIRm SINE MIR 166 276 0 4 945 378 0 0 0 chr4 47238824 47238866 -108391254 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 945 222 241 19 0 chr4 47239412 47239466 -108390654 + MIR SINE MIR 53 107 -155 4 945 327 317 53 34 chr4 47239808 47240017 -108390103 - MIRb SINE MIR -47 221 9 4 945 732 306 132 9 chr4 47242377 47242825 -108387295 - Lx8 LINE L1 -1 7472 6970 4 945 344 155 14 0 chr4 47242912 47242983 -108387137 + (TTCA)n Simple_repeat Simple_repeat 1 72 0 4 945 290 297 187 13 chr4 47243826 47243976 -108386144 - MER5A DNA MER1_type -9 180 5 4 945 235 211 84 0 chr4 47244194 47244265 -108385855 - MLT1F2 LTR MaLR -24 536 460 4 945 432 0 0 0 chr4 47244653 47244701 -108385419 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 945 333 0 0 0 chr4 47244701 47244737 -108385383 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 945 235 350 30 0 chr4 47245082 47245182 -108384938 - MIRb SINE MIR -143 125 23 4 945 504 105 0 0 chr4 47245929 47246005 -108384115 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 945 191 354 103 36 chr4 47246713 47246965 -108383155 + L3 LINE CR1 4168 4436 -53 4 945 239 269 0 0 chr4 47247152 47247204 -108382916 + PB1 SINE Alu 74 125 -2 4 945 802 246 15 20 chr4 47248680 47248883 -108381237 + B3 SINE B2 5 206 -10 4 945 217 231 0 0 chr4 47248927 47248966 -108381154 + polypurine Low_complexity Low_complexity 4 42 0 4 945 301 268 154 43 chr4 47249680 47249797 -108380323 + B4 SINE B4 159 288 -4 4 945 429 20 0 0 chr4 47249802 47249852 -108380268 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 945 752 231 7 7 chr4 47251369 47251517 -108378603 - B1_Mur2 SINE Alu 0 149 2 4 945 381 332 67 21 chr4 47252039 47252279 -108377841 - L1MC LINE L1 -2259 5623 5373 4 945 21 36 0 0 chr4 47252452 47252480 -108377640 + AT_rich Low_complexity Low_complexity 1 28 0 4 945 185 288 82 0 chr4 47252745 47252818 -108377302 + MIR3 SINE MIR 102 180 -28 4 945 180 152 0 0 chr4 47253096 47253129 -108376991 + GA-rich Low_complexity Low_complexity 2 34 0 4 945 506 221 38 15 chr4 47253456 47253589 -108376531 + B1_Mur1 SINE Alu 12 147 -2 4 945 604 225 86 27 chr4 47253653 47253840 -108376280 + B3A SINE B2 1 198 0 4 945 858 150 0 0 chr4 47254613 47254753 -108375367 - B1_Mus2 SINE Alu -1 146 7 4 945 350 261 0 112 chr4 47254647 47254772 -108375348 - MT2B LTR ERVL -337 264 154 4 945 343 286 63 21 chr4 47254772 47254915 -108375205 - B1F SINE Alu 0 149 1 4 945 499 279 51 33 chr4 47254915 47255130 -108374990 - MER33 DNA MER1_type -91 233 15 4 945 243 61 0 0 chr4 47255371 47255404 -108374716 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 945 891 102 6 33 chr4 47255416 47255599 -108374521 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 4 945 540 73 0 0 chr4 47255622 47255704 -108374416 + (CAGAGA)n Simple_repeat Simple_repeat 2 83 0 4 945 216 0 0 0 chr4 47255724 47255748 -108374372 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 945 709 252 181 50 chr4 47255752 47255990 -108374130 - B4A SINE B4 -22 270 2 5 945 366 186 0 0 chr4 47256104 47256190 -108373930 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 945 343 272 85 12 chr4 47256349 47256514 -108373606 + MIR3 SINE MIR 32 210 -58 5 945 1050 280 108 9 chr4 47256661 47257003 -108373117 - MTD LTR MaLR -39 380 5 5 945 305 311 154 26 chr4 47257377 47257572 -108372548 + MIRb SINE MIR 26 245 -23 5 945 234 0 0 0 chr4 47257582 47257608 -108372512 + (CTG)n Simple_repeat Simple_repeat 1 26 0 5 945 282 56 0 0 chr4 47257612 47257648 -108372472 + (ATG)n Simple_repeat Simple_repeat 3 38 0 5 945 245 240 26 39 chr4 47257864 47257942 -108372178 + MER112 DNA MER1_type 3 79 -182 5 945 229 387 58 0 chr4 47258991 47259128 -108370992 + B4 SINE B4 55 199 -93 5 945 516 196 47 0 chr4 47259034 47259141 -108370979 + B1F SINE Alu 13 124 -25 5 945 413 237 129 17 chr4 47259423 47259539 -108370581 + B1F SINE Alu 13 141 -8 5 945 564 190 60 0 chr4 47259537 47259653 -108370467 + B1_Mur2 SINE Alu 27 149 0 5 945 21 0 0 0 chr4 47259653 47259674 -108370446 + AT_rich Low_complexity Low_complexity 1 21 0 5 945 752 40 0 20 chr4 47259679 47259780 -108370340 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5 945 186 43 0 0 chr4 47260879 47260902 -108369218 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 5 945 465 318 11 17 chr4 47261654 47261911 -108368209 + (CATA)n Simple_repeat Simple_repeat 1 255 0 5 945 199 334 60 77 chr4 47264658 47264968 -108365152 + L2b LINE L2 2978 3354 -21 5 945 1100 197 39 0 chr4 47265611 47265814 -108364306 - B3 SINE B2 0 216 6 5 945 287 279 46 46 chr4 47265832 47265941 -108364179 - MIRc SINE MIR -112 156 48 5 945 253 253 38 51 chr4 47266087 47266166 -108363954 - MLT1J1 LTR MaLR -22 422 345 5 945 247 374 13 4 chr4 47267069 47267205 -108362915 - MIR SINE MIR -103 173 34 5 945 22 0 0 0 chr4 47267568 47267590 -108362530 + GC_rich Low_complexity Low_complexity 1 22 0 5 945 22 0 0 0 chr4 47268128 47268150 -108361970 + AT_rich Low_complexity Low_complexity 1 22 0 5 945 433 254 0 42 chr4 47268948 47269067 -108361053 + PB1D10 SINE Alu 1 114 -3 5 945 25 31 0 0 chr4 47269183 47269215 -108360905 + AT_rich Low_complexity Low_complexity 1 32 0 5 945 399 269 40 90 chr4 47269628 47269828 -108360292 - MIRb SINE MIR -15 253 64 5 945 643 278 46 34 chr4 47270539 47270788 -108359332 + B4A SINE B4 38 292 0 5 945 441 265 0 29 chr4 47270860 47270965 -108359155 - B1_Mur2 SINE Alu -46 103 2 5 945 2267 60 9 6 chr4 47274304 47274621 -108355499 + L1Md_F2 LINE L1 6265 6582 0 5 945 21 36 0 0 chr4 47274756 47274784 -108355336 + AT_rich Low_complexity Low_complexity 1 28 0 5 945 180 0 0 0 chr4 47276940 47276960 -108353160 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 945 407 52 0 17 chr4 47277027 47277086 -108353034 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 945 252 137 0 0 chr4 47277095 47277146 -108352974 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 945 269 363 55 15 chr4 47278022 47278296 -108351824 + L1ME4a LINE L1 5658 5942 -182 5 945 346 308 0 0 chr4 47278453 47278531 -108351589 - ID4_ SINE ID -3 80 3 5 945 342 350 31 62 chr4 47278595 47278770 -108351350 - B4A SINE B4 -8 284 120 5 945 270 81 0 0 chr4 47278770 47278807 -108351313 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 945 342 350 31 62 chr4 47278807 47278923 -108351197 - B4A SINE B4 -173 119 2 5 945 325 336 0 8 chr4 47278944 47279070 -108351050 + GA-rich Low_complexity Low_complexity 3 127 0 5 945 185 246 169 0 chr4 47279370 47279435 -108350685 + MIR SINE MIR 175 250 -12 5 945 200 217 0 32 chr4 47280245 47280307 -108349813 + CT-rich Low_complexity Low_complexity 3 62 0 5 945 1840 190 29 29 chr4 47281162 47281536 -108348584 - ORR1D1 LTR MaLR 0 374 1 5 945 220 321 68 48 chr4 47282930 47283077 -108347043 + MIR SINE MIR 53 202 -60 5 945 264 167 0 0 chr4 47283435 47283483 -108346637 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 945 258 32 0 0 chr4 47284503 47284534 -108345586 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 945 1334 278 62 41 chr4 47284537 47284954 -108345166 - MER44B DNA MER2_type -124 426 1 5 945 227 302 0 54 chr4 47285036 47285092 -108345028 - ID_B1 SINE B4 -91 133 81 5 945 412 196 152 0 chr4 47286291 47286403 -108343717 - ID_B1 SINE B4 -14 210 82 5 945 670 274 66 117 chr4 47287419 47287811 -108342309 - MTEb LTR MaLR -7 372 1 5 945 659 226 0 64 chr4 47287828 47287984 -108342136 + B1_Mur1 SINE Alu 4 149 0 5 945 293 261 44 36 chr4 47288311 47288626 -108341494 - RMER17D LTR ERVK -352 537 229 5 945 210 140 34 34 chr4 47288947 47289006 -108341114 + G-rich Low_complexity Low_complexity 6 64 0 5 945 390 242 87 39 chr4 47289883 47289986 -108340134 + B1_Mur1 SINE Alu 31 138 -11 5 945 270 193 18 0 chr4 47289986 47290043 -108340077 - HAL1 LINE L1 -904 1603 1546 5 945 731 290 60 79 chr4 47291583 47291901 -108338219 - MTEa LTR MaLR -66 313 2 5 945 276 53 0 0 chr4 47295157 47295195 -108334925 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 945 342 0 0 0 chr4 47295208 47295246 -108334874 + (TATG)n Simple_repeat Simple_repeat 2 39 0 5 945 456 19 0 0 chr4 47296827 47296880 -108333240 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 5 945 507 17 0 0 chr4 47299775 47299835 -108330285 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 945 1065 185 14 23 chr4 47300125 47300341 -108329779 - B3 SINE B2 0 216 3 5 945 200 35 35 0 chr4 47300837 47300866 -108329254 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 5 945 1152 199 14 10 chr4 47302628 47302836 -108327284 + B3 SINE B2 8 216 0 5 945 342 268 93 0 chr4 47303038 47303135 -108326985 - MLT1J2 LTR MaLR -302 146 41 5 945 348 24 0 0 chr4 47303408 47303449 -108326671 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 945 468 0 0 0 chr4 47303719 47303771 -108326349 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 5 945 240 231 58 0 chr4 47304130 47304182 -108325938 + MER91B DNA Tip100 135 189 -1 5 945 594 206 33 66 chr4 47304225 47304376 -108325744 + MER5A1 DNA MER1_type 2 147 -19 5 945 326 289 80 30 chr4 47305751 47305851 -108324269 + MIRm SINE MIR 25 129 -147 5 945 224 339 67 0 chr4 47306664 47306785 -108323335 - MIR SINE MIR -104 164 33 5 945 433 248 25 42 chr4 47306946 47307064 -108323056 - L2b LINE L2 -2 3373 3258 5 945 1140 264 20 77 chr4 47308010 47308412 -108321708 + MTE2a LTR MaLR 1 379 0 5 945 273 247 106 53 chr4 47309296 47309367 -108320753 + B4 SINE B4 2 80 -212 5 945 216 0 0 0 chr4 47309367 47309391 -108320729 + (CAT)n Simple_repeat Simple_repeat 1 24 0 5 945 273 247 106 53 chr4 47309391 47309413 -108320707 + B4 SINE B4 81 100 -192 5 945 225 239 0 0 chr4 47309489 47309535 -108320585 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 945 429 20 0 0 chr4 47309535 47309585 -108320535 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 945 552 326 15 60 chr4 47309680 47309879 -108320241 + ID_B1 SINE B4 3 192 -32 5 945 414 0 0 0 chr4 47309920 47309966 -108320154 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 945 708 12 0 0 chr4 47309968 47310049 -108320071 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 945 493 228 0 19 chr4 47310322 47310425 -108319695 - PB1D9 SINE Alu -2 118 18 5 945 249 197 14 129 chr4 47310363 47310433 -108319687 - MT2B LTR ERVL -367 234 173 5 945 318 264 0 33 chr4 47312178 47312268 -108317852 - MLT1A1 LTR MaLR 0 408 322 5 945 217 331 121 24 chr4 47313077 47313201 -108316919 + MIR3 SINE MIR 42 177 -31 5 945 264 282 0 0 chr4 47313612 47313683 -108316437 - L1MB7 LINE L1 -24 6160 6090 5 945 321 209 167 34 chr4 47313658 47313799 -108316321 - L1M3 LINE L1 -637 5541 5381 5 945 560 191 95 0 chr4 47313827 47313932 -108316188 - MTC LTR MaLR -306 115 1 5 945 844 257 106 27 chr4 47314110 47314366 -108315754 + B4 SINE B4 2 277 -15 5 945 477 0 0 0 chr4 47314406 47314459 -108315661 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 945 216 158 0 0 chr4 47314459 47314497 -108315623 + GA-rich Low_complexity Low_complexity 3 40 0 5 945 224 363 80 0 chr4 47314497 47314610 -108315510 - MIRb SINE MIR -128 140 19 5 945 266 346 0 0 chr4 47314787 47314868 -108315252 + ID4_ SINE ID 3 83 0 5 945 234 0 0 0 chr4 47314958 47314984 -108315136 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 945 251 287 126 27 chr4 47315487 47315616 -108314504 - MLT1K LTR MaLR -329 266 64 5 118 893 247 16 6 chr4 47316950 47317030 -108313090 + ID SINE ID 1 82 -142 5 946 370 304 8 57 chr4 47317030 47317152 -108312968 + PB1D10 SINE Alu 1 116 -1 5 946 262 278 0 43 chr4 47317319 47317413 -108312707 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 946 186 310 56 22 chr4 47318032 47318121 -108311999 + L3 LINE CR1 956 1047 -3442 5 946 438 306 0 0 chr4 47318323 47318431 -108311689 + PB1D10 SINE Alu 1 108 -9 5 946 819 271 23 78 chr4 47318436 47318744 -108311376 + B4A SINE B4 1 291 -1 5 946 231 214 0 0 chr4 47318745 47318815 -108311305 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 946 667 191 0 18 chr4 47318952 47319229 -108310891 + (CA)n Simple_repeat Simple_repeat 1 271 0 5 946 248 217 0 0 chr4 47319274 47319320 -108310800 + ZP3AR Satellite Satellite 37 82 -130 6 946 390 232 12 0 chr4 47319280 47319362 -108310758 + ID4 SINE ID 1 83 0 6 946 261 119 0 0 chr4 47320093 47320135 -108309985 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 6 946 438 227 122 10 chr4 47320144 47320242 -108309878 - PB1D9 SINE Alu -8 112 4 6 946 896 272 9 27 chr4 47320765 47320984 -108309136 - B3 SINE B2 0 216 2 6 946 248 358 59 82 chr4 47320988 47321207 -108308913 - L2b LINE L2 -110 3265 3052 6 946 629 37 54 18 chr4 47322633 47322744 -108307376 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 6 946 216 0 0 0 chr4 47322744 47322768 -108307352 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 946 273 300 143 6 chr4 47323861 47324022 -108306098 + MIRb SINE MIR 1 183 -85 6 946 1055 308 8 0 chr4 47324569 47324832 -108305288 + B4A SINE B4 1 265 -27 6 946 225 0 0 0 chr4 47324834 47324859 -108305261 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 946 216 336 62 85 chr4 47326651 47326781 -108303339 - MIRb SINE MIR -90 178 52 6 946 182 91 0 29 chr4 47326972 47327006 -108303114 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 6 946 267 138 24 36 chr4 47328053 47328136 -108301984 + G-rich Low_complexity Low_complexity 2 83 0 6 946 348 278 66 30 chr4 47330196 47330363 -108299757 - L1MA5 LINE L1 -2 6298 6126 6 946 782 275 78 50 chr4 47330443 47330726 -108299394 + ORR1E LTR MaLR 3 293 -66 6 946 881 260 104 113 chr4 47330884 47331353 -108298767 + RMER13A LTR ERVK 2 466 -394 6 946 680 289 24 6 chr4 47331653 47331820 -108298300 - B3A SINE B2 -28 170 1 6 946 297 273 123 26 chr4 47331878 47332032 -108298088 - LTR16C LTR ERVL -102 387 219 6 946 571 181 7 14 chr4 47332810 47332956 -108297164 + GA-rich Low_complexity Low_complexity 2 146 0 6 946 496 289 52 7 chr4 47333441 47333594 -108296526 + RSINE1 SINE B4 2 161 -4 6 946 244 281 6 6 chr4 47333601 47333780 -108296340 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 946 492 285 8 8 chr4 47334522 47334653 -108295467 + Tigger7 DNA MER2_type 1 131 -2360 6 946 1128 114 0 0 chr4 47334796 47334972 -108295148 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 6 946 510 17 0 0 chr4 47334974 47335033 -108295087 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 6 946 265 159 32 0 chr4 47335035 47335098 -108295022 + (TATG)n Simple_repeat Simple_repeat 2 66 0 6 946 601 251 128 6 chr4 47335130 47335310 -108294810 - B3 SINE B2 -14 202 1 6 946 754 286 82 18 chr4 47335310 47335591 -108294529 + MTE2a LTR MaLR 81 379 0 6 946 706 269 98 0 chr4 47336133 47336326 -108293794 + ID_B1 SINE B4 1 212 -12 6 946 1649 155 62 64 chr4 47337885 47337920 -108292200 + ORR1D1 LTR MaLR 3 38 -336 6 946 2198 159 23 10 chr4 47337920 47338307 -108291813 + ORR1B1 LTR MaLR 3 394 0 6 946 1649 155 62 64 chr4 47338307 47338644 -108291476 + ORR1D1 LTR MaLR 39 374 0 6 946 434 296 29 103 chr4 47338841 47339205 -108290915 - ORR1E LTR MaLR -12 358 18 6 946 396 0 0 0 chr4 47339403 47339447 -108290673 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 946 607 289 0 13 chr4 47339461 47339615 -108290505 - B3A SINE B2 -45 153 2 6 946 314 268 12 24 chr4 47339619 47339703 -108290417 - ID4_ SINE ID 0 83 1 6 946 326 343 7 35 chr4 47339718 47339860 -108290260 - ID_B1 SINE B4 -9 215 78 6 946 2122 164 35 15 chr4 47339888 47340290 -108289830 - MTC LTR MaLR 0 421 12 6 946 277 258 10 79 chr4 47340313 47340414 -108289706 - ID_B1 SINE B4 -54 170 77 6 946 326 272 33 0 chr4 47340871 47340963 -108289157 + L2a LINE L2 3331 3425 -1 6 946 240 298 0 0 chr4 47341735 47341792 -108288328 + ID_B1 SINE B4 86 142 -82 6 946 233 347 0 0 chr4 47341792 47341807 -108288313 + PB1D10 SINE Alu 5 76 -41 6 946 498 302 6 41 chr4 47342020 47342189 -108287931 + MER21B LTR ERV1 273 435 -428 6 946 681 103 0 0 chr4 47342618 47342735 -108287385 + (TC)n Simple_repeat Simple_repeat 2 118 0 6 946 366 23 0 0 chr4 47342735 47342778 -108287342 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 946 989 270 69 44 chr4 47342837 47343244 -108286876 + MER21B LTR ERV1 396 812 -51 6 946 232 282 135 40 chr4 47343991 47344139 -108285981 - MIR3 SINE MIR -2 206 45 6 946 450 0 0 0 chr4 47345018 47345068 -108285052 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 946 510 276 63 0 chr4 47345366 47345493 -108284627 + ID_B1 SINE B4 87 221 -3 6 946 184 310 0 54 chr4 47345904 47345996 -108284124 - MIRc SINE MIR -4 264 178 6 946 257 227 15 15 chr4 47345998 47346065 -108284055 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 946 281 217 205 16 chr4 47347094 47347216 -108282904 + MER112 DNA MER1_type 100 244 -17 6 946 759 182 20 27 chr4 47347731 47347878 -108282242 + B1_Mus2 SINE Alu 1 146 -1 6 946 608 120 0 10 chr4 47347949 47347991 -108282129 + (GAA)n Simple_repeat Simple_repeat 1 42 0 6 946 1389 61 0 0 chr4 47347991 47348171 -108281949 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 946 608 120 0 10 chr4 47348171 47348229 -108281891 + (GAA)n Simple_repeat Simple_repeat 1 58 0 6 946 183 100 0 0 chr4 47348229 47348259 -108281861 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 946 369 0 0 0 chr4 47349807 47349848 -108280272 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 946 309 140 0 0 chr4 47349851 47349908 -108280212 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 946 288 200 61 24 chr4 47350564 47350646 -108279474 + B3A SINE B2 5 89 -109 6 946 209 255 29 10 chr4 47350686 47350789 -108279331 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 6 946 387 194 3 60 chr4 47350790 47350906 -108279214 + B3A SINE B2 105 216 0 6 946 360 0 0 0 chr4 47351061 47351101 -108279019 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 946 811 220 45 75 chr4 47351296 47351497 -108278623 + B3A SINE B2 1 195 -3 6 946 880 275 66 92 chr4 47351896 47352428 -108277692 - MT2A LTR ERVL -6 527 10 6 946 385 139 0 77 chr4 47352702 47352819 -108277301 + CT-rich Low_complexity Low_complexity 2 109 0 6 946 225 0 0 0 chr4 47353022 47353047 -108277073 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 946 4790 31 2 0 chr4 47353048 47353600 -108276520 - L1Md_F3 LINE L1 -12 6572 6020 6 946 423 0 0 0 chr4 47353609 47353656 -108276464 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 946 369 62 0 0 chr4 47353999 47354047 -108276073 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 946 237 83 0 0 chr4 47355162 47355198 -108274922 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 946 183 80 0 0 chr4 47355235 47355260 -108274860 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 6 946 234 0 0 0 chr4 47355525 47355551 -108274569 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 946 477 278 0 9 chr4 47356542 47356658 -108273462 - RSINE1 SINE B4 -40 125 11 6 946 1200 111 0 0 chr4 47356678 47356858 -108273262 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 6 946 453 145 0 0 chr4 47356858 47356934 -108273186 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 6 946 605 236 0 0 chr4 47356934 47357057 -108273063 - B1_Mur1 SINE Alu -8 141 19 6 946 191 62 0 59 chr4 47357187 47357221 -108272899 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 946 216 67 0 0 chr4 47357306 47357336 -108272784 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 6 946 321 210 155 29 chr4 47357621 47357724 -108272396 + L1M5 LINE L1 4458 4573 -1573 6 946 326 322 173 11 chr4 47357873 47358058 -108272062 + L1M5 LINE L1 4855 5069 -1077 6 946 325 259 0 0 chr4 47358067 47358148 -108271972 + L1MC1 LINE L1 6035 6115 -229 6 946 445 252 72 49 chr4 47358623 47358835 -108271285 + L1MC1 LINE L1 6123 6339 -5 6 946 778 295 35 0 chr4 47358847 47359047 -108271073 + ID_B1 SINE B4 8 214 -10 6 946 412 300 47 10 chr4 47359094 47359313 -108270807 + L1MEg LINE L1 1222 1466 -4542 6 946 928 233 161 16 chr4 47359313 47359636 -108270484 - ORR1D1 LTR MaLR -4 370 1 6 946 280 340 73 32 chr4 47359636 47359730 -108270390 + L1MEg LINE L1 1467 1563 -4445 6 946 243 224 220 44 chr4 47359898 47360057 -108270063 - B3A SINE B2 -11 187 1 6 946 434 320 211 13 chr4 47360158 47360471 -108269649 + Lx8 LINE L1 7095 7469 -4 6 946 225 0 0 0 chr4 47360567 47360592 -108269528 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 946 333 0 0 0 chr4 47360592 47360628 -108269492 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 946 497 279 122 15 chr4 47360916 47361120 -108269000 - MER21B LTR ERV1 -324 539 314 6 946 468 0 0 0 chr4 47361466 47361518 -108268602 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 946 404 319 20 46 chr4 47361561 47361712 -108268408 + MLT1H LTR MaLR 142 288 -261 6 946 1166 257 245 2 chr4 47362231 47362542 -108267578 - MT2A LTR ERVL 0 533 191 6 946 993 41 0 0 chr4 47362542 47362664 -108267456 + (CAAAG)n Simple_repeat Simple_repeat 3 124 0 6 946 1166 257 245 2 chr4 47362664 47362781 -108267339 - MT2A LTR ERVL -343 190 3 6 946 184 296 0 0 chr4 47363987 47364031 -108266089 - L2a LINE L2 -18 3408 3365 6 946 282 288 0 112 chr4 47364224 47364349 -108265771 + PB1D10 SINE Alu 5 115 -2 6 946 648 247 27 38 chr4 47364355 47364540 -108265580 + B3A SINE B2 1 183 -15 6 946 257 281 0 0 chr4 47364540 47364597 -108265523 + ID2 SINE ID 2 58 -25 6 946 203 170 36 36 chr4 47366069 47366124 -108263996 + (CGGGG)n Simple_repeat Simple_repeat 5 59 0 6 946 22 0 0 0 chr4 47366140 47366162 -108263958 + GC_rich Low_complexity Low_complexity 1 22 0 6 946 27 49 0 0 chr4 47366274 47366315 -108263805 + GC_rich Low_complexity Low_complexity 1 41 0 6 946 33 43 0 0 chr4 47366345 47366392 -108263728 + GC_rich Low_complexity Low_complexity 1 47 0 6 946 212 237 0 17 chr4 47366412 47366472 -108263648 + G-rich Low_complexity Low_complexity 1 59 0 6 946 193 252 248 12 chr4 47367405 47367503 -108262617 - MIR SINE MIR -133 135 14 6 946 808 209 42 21 chr4 47367894 47368134 -108261986 - RCHARR1 DNA MER1_type -1 973 729 7 946 1576 206 187 11 chr4 47368153 47368623 -108261497 - RCHARR1 DNA MER1_type -364 610 58 7 946 254 200 144 21 chr4 47368666 47368763 -108261357 + PB1D9 SINE Alu 2 110 -10 7 946 616 275 35 96 chr4 47371027 47371211 -108258909 - ID_B1 SINE B4 -6 218 48 7 946 216 0 0 0 chr4 47371211 47371235 -108258885 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 946 616 275 35 96 chr4 47371235 47371279 -108258841 - ID SINE ID -177 47 4 7 946 268 234 31 0 chr4 47371759 47371823 -108258297 - ID2 SINE ID -10 73 8 7 946 504 281 20 27 chr4 47372353 47372503 -108257617 - B4A SINE B4 -2 290 142 7 946 418 271 60 8 chr4 47372596 47372730 -108257390 - B1F SINE Alu -8 141 1 7 946 204 40 0 0 chr4 47373035 47373060 -108257060 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 946 751 302 19 67 chr4 47373090 47373360 -108256760 - B4A SINE B4 -35 257 1 7 946 218 323 196 10 chr4 47375091 47375285 -108254835 + L3 LINE CR1 4251 4480 -9 7 946 922 207 37 5 chr4 47375411 47375600 -108254520 + B3A SINE B2 1 195 -3 7 946 313 270 0 0 chr4 47377429 47377503 -108252617 - ID4_ SINE ID 0 83 10 7 946 246 62 0 0 chr4 47377551 47377583 -108252537 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 946 309 273 160 10 chr4 47377598 47377698 -108252422 - PB1 SINE Alu -12 115 1 7 946 702 198 0 0 chr4 47377902 47378023 -108252097 - B1_Mur1 SINE Alu -1 148 28 7 946 610 25 12 0 chr4 47378596 47378677 -108251443 + ORR1A3 LTR MaLR 237 318 -8 7 946 21 0 0 0 chr4 47379214 47379235 -108250885 + AT_rich Low_complexity Low_complexity 1 21 0 7 946 999 120 233 6 chr4 47379972 47380148 -108249972 - B3 SINE B2 0 216 1 7 946 4001 182 44 22 chr4 47380189 47380304 -108249816 - RMER1A Other Other 0 1030 910 7 946 291 71 0 0 chr4 47380304 47380346 -108249774 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 946 4001 182 43 21 chr4 47380346 47381019 -108249101 - RMER1A Other Other -121 909 245 7 946 205 167 0 0 chr4 47382349 47382385 -108247735 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 946 219 269 41 41 chr4 47382565 47382662 -108247458 - L3 LINE CR1 -688 3801 3705 7 946 1058 126 73 11 chr4 47383035 47383212 -108246908 + B2_Mm2 SINE B2 1 188 -7 7 946 409 247 67 0 chr4 47383212 47383317 -108246803 + PB1D9 SINE Alu 2 120 0 7 946 710 10 20 20 chr4 47383357 47383458 -108246662 + (TTCTC)n Simple_repeat Simple_repeat 4 104 0 7 946 723 49 47 40 chr4 47383468 47383616 -108246504 - RMER17B LTR ERVK -498 460 312 7 946 414 0 0 0 chr4 47384921 47384967 -108245153 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 946 963 234 14 41 chr4 47384975 47385193 -108244927 - B4A SINE B4 -25 267 56 7 946 248 191 20 4 chr4 47385792 47385880 -108244240 + L1M2 LINE L1 3067 3168 -2975 7 946 2341 276 123 20 chr4 47385956 47387430 -108242690 + L1M2 LINE L1 3196 4826 -1314 7 946 862 217 40 11 chr4 47387579 47387772 -108242348 - MTE2b LTR MaLR 0 374 182 7 946 708 269 105 65 chr4 47387822 47388310 -108241810 + L1M2 LINE L1 5053 5595 -702 7 946 396 0 0 0 chr4 47388310 47388354 -108241766 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 946 580 233 130 65 chr4 47388354 47388376 -108241744 + L1M2 LINE L1 5596 5614 -683 7 946 4512 137 100 9 chr4 47388419 47389208 -108240912 - MERVL_2A-int LTR ERVL -4895 866 6 7 946 2046 148 133 44 chr4 47389213 47389596 -108240524 - MTC LTR MaLR 0 421 5 7 946 510 287 121 48 chr4 47389600 47389613 -108240507 + L1MA4 LINE L1 5641 5653 -1820 7 946 2919 167 38 34 chr4 47389613 47390139 -108239981 + RLTR12B LTR ERVK 1 528 0 7 946 605 247 147 7 chr4 47390139 47390374 -108239746 + L1MA4 LINE L1 5654 5935 -365 7 946 620 235 29 7 chr4 47390669 47390806 -108239314 - RSINE1 SINE B4 -24 141 2 7 946 1682 42 0 15 chr4 47390808 47391003 -108239117 - B2_Mm1a SINE B2 -1 192 1 7 946 615 224 131 49 chr4 47391120 47391303 -108238817 + B3A SINE B2 1 198 0 7 946 334 197 106 0 chr4 47391389 47391455 -108238665 - ID4_ SINE ID -10 73 1 7 946 348 336 8 33 chr4 47391460 47391580 -108238540 - PB1D10 SINE Alu 0 117 1 7 946 2211 143 134 8 chr4 47391674 47392048 -108238072 - MTC LTR MaLR 0 421 1 7 946 180 262 48 32 chr4 47393267 47393330 -108236790 + L3 LINE CR1 3161 3224 -1265 7 946 375 320 0 40 chr4 47393657 47393758 -108236362 - RSINE1 SINE B4 -37 128 32 7 946 241 241 37 0 chr4 47393908 47393962 -108236158 - MER77 LTR ERVL -3 604 549 7 946 277 287 9 82 chr4 47394217 47394327 -108235793 + PB1D10 SINE Alu 6 107 -10 7 946 695 258 97 27 chr4 47394732 47394991 -108235129 - MER77 LTR ERVL -51 556 280 7 946 236 28 0 53 chr4 47395142 47395180 -108234940 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 7 946 470 304 42 56 chr4 47395186 47395329 -108234791 - MTEa LTR MaLR -238 141 1 7 946 536 337 14 79 chr4 47395404 47395620 -108234500 - MER77 LTR ERVL -405 202 1 7 946 198 0 0 0 chr4 47396912 47396934 -108233186 + (A)n Simple_repeat Simple_repeat 1 22 0 7 946 1170 66 0 0 chr4 47397388 47397524 -108232596 + B1_Mus2 SINE Alu 2 137 -10 7 946 998 202 75 15 chr4 47397580 47397781 -108232339 + B3 SINE B2 3 215 -1 7 946 216 0 0 0 chr4 47397976 47398000 -108232120 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 946 479 270 81 0 chr4 47398026 47398137 -108231983 - RSINE1 SINE B4 -43 122 3 7 946 389 206 79 8 chr4 47398439 47398566 -108231554 - Lx9 LINE L1 -13 7631 7496 7 946 22 80 0 0 chr4 47398585 47398635 -108231485 + AT_rich Low_complexity Low_complexity 1 50 0 7 946 25169 134 15 14 chr4 47398653 47403670 -108226450 + L1_Mus3 LINE L1 395 5246 -640 7 946 1317 78 0 0 chr4 47403670 47403849 -108226271 + (TA)n Simple_repeat Simple_repeat 1 179 0 7 946 25149 84 16 17 chr4 47403849 47405227 -108224893 + L1_Mus3 LINE L1 5247 6633 -5 7 946 270 302 11 65 chr4 47405273 47405365 -108224755 + PB1D10 SINE Alu 26 112 -5 7 946 1660 43 0 0 chr4 47405459 47405644 -108224476 + B2_Mm1t SINE B2 2 186 -7 7 946 360 0 0 0 chr4 47406769 47406809 -108223311 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 946 578 270 0 0 chr4 47406820 47406935 -108223185 - RSINE1 SINE B4 -14 151 37 7 946 744 200 30 70 chr4 47407250 47407449 -108222671 + B2_Mm2 SINE B2 2 192 -3 7 946 4768 77 39 30 chr4 47407572 47408214 -108221906 - Lx LINE L1 -7 6647 6000 7 946 21 0 0 0 chr4 47408216 47408237 -108221883 + AT_rich Low_complexity Low_complexity 1 21 0 7 946 725 167 39 32 chr4 47408257 47408412 -108221708 - L1Md_F3 LINE L1 -1 6583 6428 7 946 346 106 0 0 chr4 47408415 47408462 -108221658 - Lx LINE L1 -643 6011 5965 7 946 285 29 0 0 chr4 47409476 47409510 -108220610 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 946 863 294 94 0 chr4 47409514 47409749 -108220371 - B4A SINE B4 -35 257 1 7 946 595 197 180 0 chr4 47409929 47410051 -108220069 - RSINE1 SINE B4 -19 146 3 7 946 282 314 0 54 chr4 47410376 47410450 -108219670 - ID4 SINE ID -8 75 6 7 946 855 0 0 0 chr4 47410495 47410590 -108219530 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 7 946 2863 187 47 25 chr4 47410591 47411162 -108218958 - Lx5 LINE L1 -15 7035 6452 7 946 913 173 249 0 chr4 47411567 47411740 -108218380 + B3 SINE B2 1 216 0 7 946 944 213 316 21 chr4 47411918 47412206 -108217914 - MTEb LTR MaLR -2 377 5 7 946 423 78 0 0 chr4 47412491 47412555 -108217565 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 946 663 78 0 0 chr4 47413068 47413158 -108216962 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 7 946 452 324 53 0 chr4 47413185 47413355 -108216765 - B3A SINE B2 -18 180 2 7 946 905 256 23 28 chr4 47413747 47413964 -108216156 + B3 SINE B2 1 216 0 7 946 617 167 146 24 chr4 47414062 47414185 -108215935 - B1_Mus1 SINE Alu 0 148 11 7 946 1678 240 56 32 chr4 47414451 47414860 -108215260 - MTD LTR MaLR 0 419 1 7 946 212 284 120 60 chr4 47415363 47415513 -108214607 + MIRc SINE MIR 60 218 -50 7 946 209 296 102 32 chr4 47416956 47417113 -108213007 - MIR SINE MIR -22 240 73 7 946 677 131 213 0 chr4 47417319 47417441 -108212679 + B1_Mus1 SINE Alu 1 148 0 7 946 260 333 135 31 chr4 47418205 47418301 -108211819 + B4 SINE B4 81 186 -106 7 946 357 269 85 7 chr4 47418222 47418316 -108211804 + B1_Mus1 SINE Alu 10 105 -12 7 946 1631 205 108 6 chr4 47419268 47419612 -108210508 - MTE2a LTR MaLR 0 379 1 7 946 198 304 196 0 chr4 47420189 47420301 -108209819 + MIR SINE MIR 20 153 -55 7 946 482 318 59 5 chr4 47420617 47420819 -108209301 + ID_B1 SINE B4 4 216 -8 7 946 302 289 10 49 chr4 47421458 47421469 -108208651 + ID SINE ID 76 82 -142 7 946 404 263 26 29 chr4 47421469 47421599 -108208521 + PB1D10 SINE Alu 2 130 -19 7 946 329 288 0 0 chr4 47421628 47421703 -108208417 + ID4_ SINE ID 3 77 -6 7 946 367 321 109 36 chr4 47421743 47421908 -108208212 - HAL1 LINE L1 -599 1908 1732 7 946 403 324 106 9 chr4 47421949 47422167 -108207953 + L2a LINE L2 3185 3423 -3 7 946 246 265 28 38 chr4 47422499 47422605 -108207515 + HAL1 LINE L1 848 952 -1555 7 946 256 298 190 27 chr4 47422767 47422988 -108207132 - HAL1 LINE L1 -1599 908 652 7 946 246 302 104 0 chr4 47428182 47428288 -108201832 + L1M4b LINE L1 2616 2732 -4602 7 946 283 219 62 0 chr4 47428851 47428915 -108201205 + ID2 SINE ID 2 69 -14 7 946 575 237 13 97 chr4 47428943 47429097 -108201023 + B3A SINE B2 2 142 -53 7 946 227 218 191 22 chr4 47429106 47429195 -108200925 + L1_Mm LINE L1 4788 4891 -992 7 946 206 220 39 20 chr4 47429197 47429248 -108200872 + L3 LINE CR1 2414 2465 -2024 7 946 1172 90 0 0 chr4 47429268 47429413 -108200707 - B1_Mus1 SINE Alu -2 146 2 7 946 380 220 96 22 chr4 47429490 47429625 -108200495 + L1M4b LINE L1 5994 6138 -868 7 946 293 202 186 78 chr4 47429626 47429755 -108200365 - RSINE1 SINE B4 -12 153 11 7 946 509 194 41 0 chr4 47429894 47429992 -108200128 + PB1D10 SINE Alu 16 117 0 7 946 349 318 85 23 chr4 47430161 47430338 -108199782 - MER53 DNA hAT 0 193 6 8 946 1181 247 81 25 chr4 47430717 47431074 -108199046 - MTE2a LTR MaLR -2 377 1 8 946 262 194 48 16 chr4 47431154 47431217 -108198903 + L1MB8 LINE L1 6036 6100 -78 8 946 495 222 18 36 chr4 47432266 47432378 -108197742 + PB1D9 SINE Alu 11 120 0 8 946 785 167 7 0 chr4 47433984 47434134 -108195986 + CT-rich Low_complexity Low_complexity 2 152 0 8 946 24 0 0 0 chr4 47434158 47434182 -108195938 + GC_rich Low_complexity Low_complexity 1 24 0 8 946 372 264 381 18 chr4 47434693 47434914 -108195206 + ORR1E LTR MaLR 1 301 -58 8 946 23 0 0 0 chr4 47434919 47434942 -108195178 + AT_rich Low_complexity Low_complexity 1 23 0 8 946 413 236 85 47 chr4 47434950 47435079 -108195041 - RSINE1 SINE B4 -28 137 4 8 946 488 45 15 0 chr4 47435890 47435957 -108194163 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 946 633 171 12 19 chr4 47437124 47437285 -108192835 + CT-rich Low_complexity Low_complexity 5 164 0 8 946 396 0 0 0 chr4 47438434 47438478 -108191642 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 946 435 283 44 0 chr4 47438600 47438713 -108191407 + PB1 SINE Alu 1 118 -9 8 946 728 183 15 37 chr4 47439669 47439805 -108190315 + B3A SINE B2 5 137 -61 8 946 591 15 0 0 chr4 47439817 47439885 -108190235 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 946 450 0 0 0 chr4 47439885 47439935 -108190185 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 946 23 33 0 0 chr4 47439935 47439965 -108190155 + AT_rich Low_complexity Low_complexity 1 30 0 8 946 966 129 14 54 chr4 47440021 47440168 -108189952 - B1_Mur4 SINE Alu -8 142 2 8 946 215 304 47 84 chr4 47441049 47441239 -108188881 - MIR SINE MIR -1 261 79 8 946 4922 127 139 38 chr4 47441296 47441623 -108188497 + RLTR25B LTR ERVK 1 327 -701 8 946 1221 61 7 0 chr4 47441623 47441770 -108188350 + B1_Mus1 SINE Alu 1 148 0 8 946 1256 55 6 0 chr4 47441772 47441937 -108188183 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 8 946 4922 127 139 38 chr4 47441937 47442277 -108187843 + RLTR25B LTR ERVK 328 723 -305 8 946 207 0 0 0 chr4 47442277 47442300 -108187820 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 946 4922 127 139 38 chr4 47442300 47442561 -108187559 + RLTR25B LTR ERVK 724 1028 0 8 946 246 264 218 40 chr4 47442645 47442819 -108187301 - ORR1E LTR MaLR -105 254 50 8 946 1421 68 21 5 chr4 47443813 47444004 -108186116 - B2_Mm2 SINE B2 -1 194 1 8 946 517 242 127 21 chr4 47444136 47444294 -108185826 - MER20 DNA MER1_type -612 171 1 8 946 1336 239 62 85 chr4 47444492 47444917 -108185203 + RLTR16 LTR ERVK 1 411 -94 8 946 369 0 0 0 chr4 47444917 47444958 -108185162 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 946 1336 239 62 85 chr4 47444958 47445049 -108185071 + RLTR16 LTR ERVK 412 504 -1 8 946 273 266 23 124 chr4 47445076 47445205 -108184915 - RMER12 LTR ERVK -471 851 736 8 946 290 301 0 150 chr4 47445133 47445266 -108184854 - MT2B LTR ERVL -323 278 166 8 946 411 21 0 0 chr4 47445735 47445783 -108184337 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 946 258 56 0 0 chr4 47446078 47446114 -108184006 + (CATA)n Simple_repeat Simple_repeat 3 38 0 8 946 336 24 0 0 chr4 47446120 47446161 -108183959 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 946 396 0 0 0 chr4 47446161 47446204 -108183916 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 946 314 89 2 55 chr4 47446489 47446550 -108183570 - B1_Mur1 SINE Alu 0 149 62 8 946 212 100 25 0 chr4 47447322 47447362 -108182758 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 8 946 257 0 30 0 chr4 47447714 47447747 -108182373 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 947 269 368 60 60 chr4 47448888 47449073 -108181047 - L3 LINE CR1 -757 3732 3548 8 947 437 213 0 37 chr4 47449368 47449488 -108180632 + PB1D7 SINE Alu 2 107 -40 8 947 2377 189 124 2 chr4 47449595 47450093 -108180027 - Lx5 LINE L1 0 7050 6492 8 947 534 31 0 0 chr4 47451542 47451606 -108178514 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 947 364 239 0 0 chr4 47451623 47451690 -108178430 - ID4_ SINE ID -12 71 5 8 947 384 235 51 0 chr4 47452613 47452711 -108177409 + ORR1E LTR MaLR 1 103 -256 8 947 504 191 45 9 chr4 47454124 47454235 -108175885 + PB1D10 SINE Alu 1 115 -2 8 947 254 227 16 120 chr4 47454235 47454349 -108175771 + MLT1F1 LTR MaLR 108 209 -360 8 947 561 239 0 0 chr4 47454807 47454966 -108175154 + (CA)n Simple_repeat Simple_repeat 2 160 0 8 947 757 174 8 0 chr4 47455126 47455247 -108174873 + B3 SINE B2 2 123 -93 8 947 320 265 135 20 chr4 47455544 47455695 -108174425 - MIRb SINE MIR -101 167 3 8 947 547 253 135 6 chr4 47455738 47455901 -108174219 - MLT1D LTR MaLR -7 498 315 8 947 481 372 73 0 chr4 47456126 47456344 -108173776 - MLT1D LTR MaLR -267 238 5 8 947 1601 224 58 50 chr4 47456833 47457209 -108172911 - MTD LTR MaLR 0 419 41 8 947 618 234 38 130 chr4 47457237 47457498 -108172622 + MTEb LTR MaLR 115 351 -28 8 947 688 182 6 144 chr4 47457644 47457824 -108172296 + MTD LTR MaLR 1 155 -264 8 947 432 139 0 60 chr4 47457808 47457892 -108172228 - B1_Mur3 SINE Alu -70 79 1 8 947 646 267 96 5 chr4 47457993 47458181 -108171939 - MTEb LTR MaLR -5 374 170 8 947 646 225 21 0 chr4 47458183 47458325 -108171795 - B1_Mur1 SINE Alu 0 149 5 8 947 463 83 347 20 chr4 47458328 47458426 -108171694 + MTC LTR MaLR 5 134 -287 8 947 1082 150 3 0 chr4 47458524 47458710 -108171410 + MTC LTR MaLR 106 295 -124 8 947 794 228 110 51 chr4 47458733 47459148 -108170972 - RMER2 LTR ERV1 -42 525 1 8 947 509 219 122 32 chr4 47459148 47459273 -108170847 + MTC LTR MaLR 281 419 -2 8 947 566 258 93 19 chr4 47459289 47459451 -108170669 - MTEb LTR MaLR -200 179 6 8 947 1228 292 79 24 chr4 47459741 47460208 -108169912 + Lx8 LINE L1 6603 7095 -378 8 947 207 88 0 0 chr4 47460420 47460454 -108169666 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 947 219 103 0 0 chr4 47460506 47460545 -108169575 + (A)n Simple_repeat Simple_repeat 1 39 0 8 947 2255 177 49 17 chr4 47460562 47460768 -108169352 + MTC LTR MaLR 1 208 -213 8 947 1443 64 32 0 chr4 47460768 47460956 -108169164 + B2_Mm2 SINE B2 1 194 -1 8 947 2255 177 49 17 chr4 47460956 47461157 -108168963 + MTC LTR MaLR 209 421 0 8 947 1076 266 128 65 chr4 47461179 47461899 -108168221 - L1MC3 LINE L1 -80 7705 6941 8 947 261 293 0 0 chr4 47462070 47462128 -108167992 + B4A SINE B4 87 144 -148 8 947 235 281 268 0 chr4 47462128 47462152 -108167968 + PB1D10 SINE Alu 2 105 -12 8 947 284 303 53 40 chr4 47463660 47463811 -108166309 + MIR SINE MIR 100 252 -10 8 947 874 26 17 0 chr4 47463835 47463952 -108166168 + (TCTCC)n Simple_repeat Simple_repeat 2 120 0 8 947 743 207 13 46 chr4 47463957 47464109 -108166011 - B1_Mur3 SINE Alu 0 149 3 8 947 1118 258 181 53 chr4 47464602 47465266 -108164854 + Lx8 LINE L1 6457 7205 -268 8 947 672 188 0 0 chr4 47465291 47465424 -108164696 + CT-rich Low_complexity Low_complexity 3 135 0 8 947 3696 59 30 0 chr4 47465953 47466414 -108163706 + MT2C_Mm LTR ERVL 1 475 0 8 947 189 74 0 0 chr4 47468136 47468163 -108161957 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 8 947 1609 60 30 0 chr4 47468269 47468470 -108161650 + MERVL-int LTR ERVL 3932 4138 -1347 8 947 11320 184 80 160 chr4 47468484 47468762 -108161358 + Lx6 LINE L1 1436 1712 -4168 8 947 3231 50 5 10 chr4 47468762 47469164 -108160956 + MTB LTR MaLR 1 400 0 8 947 7659 67 27 69 chr4 47469164 47470310 -108159810 + MTB-int LTR MaLR 1 1098 0 8 947 719 88 52 9 chr4 47470311 47470426 -108159694 + MTB LTR MaLR 281 400 0 8 947 11320 184 80 160 chr4 47470426 47471094 -108159026 + Lx6 LINE L1 1714 2515 -3365 8 947 356 0 23 0 chr4 47471094 47471138 -108158982 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 8 947 11320 184 80 160 chr4 47471138 47472476 -108157644 + Lx6 LINE L1 2516 3582 -2298 8 947 280 256 59 82 chr4 47472476 47472646 -108157474 + RNLTR23 LTR ERVK 477 642 0 8 947 11320 184 80 160 chr4 47472646 47472975 -108157145 + Lx6 LINE L1 3583 3845 -2035 8 947 357 24 0 0 chr4 47472975 47473017 -108157103 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 947 11320 191 71 115 chr4 47473017 47475830 -108154290 + Lx6 LINE L1 3846 6806 -654 8 947 386 226 165 110 chr4 47475844 47475888 -108154232 - ORR1C2 LTR MaLR -48 336 278 8 947 964 170 55 36 chr4 47475888 47476108 -108154012 + URR1B DNA MER1_type 1 224 -1 8 947 386 226 165 110 chr4 47476108 47476227 -108153893 - ORR1C2 LTR MaLR -107 277 164 8 947 398 153 247 0 chr4 47476219 47476304 -108153816 + RLTR11B LTR ERVK 9 114 -339 8 947 2415 70 12 3 chr4 47476367 47476694 -108153426 - L1_Mus3 LINE L1 -1 6637 6308 8 947 3417 182 57 5 chr4 47476694 47477311 -108152809 + Lx6 LINE L1 6791 7439 -21 8 947 1398 99 16 0 chr4 47477311 47477502 -108152618 - B2_Mm2 SINE B2 0 195 2 8 947 2511 43 3 0 chr4 47477512 47477924 -108152196 - L1Md_F2 LINE L1 0 6582 6265 8 947 598 228 129 14 chr4 47477967 47478114 -108152006 + RSINE1 SINE B4 2 165 0 8 947 687 224 15 22 chr4 47479455 47479592 -108150528 - B1_Mur1 SINE Alu -13 136 1 8 947 557 198 81 0 chr4 47479643 47479754 -108150366 - RSINE1 SINE B4 -35 130 11 8 947 206 83 0 53 chr4 47479767 47479805 -108150315 + (CCCCCT)n Simple_repeat Simple_repeat 2 37 0 8 947 235 49 49 0 chr4 47480041 47480082 -108150038 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 8 947 2158 141 65 3 chr4 47480814 47481183 -108148937 + ORR1B1 LTR MaLR 1 392 -2 8 947 220 279 37 37 chr4 47482564 47482646 -108147474 - MIRc SINE MIR -78 190 109 8 947 1156 202 93 88 chr4 47483030 47483491 -108146629 + MT2A LTR ERVL 2 601 0 8 947 188 0 0 69 chr4 47483878 47483907 -108146213 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 947 288 0 0 0 chr4 47485737 47485769 -108144351 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 947 284 238 0 0 chr4 47486187 47486250 -108143870 + B4A SINE B4 168 230 -62 8 947 218 175 0 0 chr4 47486745 47486785 -108143335 + C-rich Low_complexity Low_complexity 1 40 0 8 947 570 251 43 76 chr4 47488330 47488515 -108141605 - B3A SINE B2 -16 182 4 8 947 234 91 0 0 chr4 47488849 47488882 -108141238 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 8 947 241 265 132 0 chr4 47488895 47488978 -108141142 - PB1D10 SINE Alu -5 112 19 8 947 270 320 0 0 chr4 47489233 47489308 -108140812 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 9 947 197 314 126 10 chr4 47489409 47489512 -108140608 + L3 LINE CR1 4264 4378 -111 9 947 2011 168 76 104 chr4 47491460 47491710 -108138410 - RLTR31_Mm LTR ERVK 0 561 321 9 947 1158 84 0 0 chr4 47491710 47491852 -108138268 - B1_Mus1 SINE Alu -6 142 1 9 947 2011 168 76 104 chr4 47491852 47492178 -108137942 - RLTR31_Mm LTR ERVK -241 320 1 9 947 351 0 0 0 chr4 47492869 47492908 -108137212 + (T)n Simple_repeat Simple_repeat 1 39 0 9 947 190 193 168 74 chr4 47493819 47493914 -108136206 - MIRc SINE MIR -121 147 44 9 947 296 342 54 0 chr4 47494057 47494168 -108135952 - PB1D10 SINE Alu 0 117 1 9 947 680 227 14 0 chr4 47495218 47495359 -108134761 + B1_Mus2 SINE Alu 5 147 0 9 947 286 291 25 0 chr4 47496451 47496530 -108133590 - PB1D10 SINE Alu 0 117 37 9 947 571 242 88 8 chr4 47496985 47497110 -108133010 + RSINE1 SINE B4 13 147 -18 9 947 506 291 37 0 chr4 47497179 47497313 -108132807 + B3A SINE B2 13 151 -47 9 947 255 79 0 0 chr4 47498072 47498110 -108132010 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 947 679 234 212 30 chr4 47498428 47498767 -108131353 - L1MB2 LINE L1 0 6171 5771 9 947 286 198 214 36 chr4 47498841 47498925 -108131195 - B1F1 SINE Alu -50 99 1 9 947 580 167 33 50 chr4 47499419 47499539 -108130581 - PB1D9 SINE Alu -2 118 1 9 947 360 94 0 0 chr4 47499856 47499909 -108130211 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 947 331 286 12 0 chr4 47499914 47499998 -108130122 - B4A SINE B4 -6 286 202 9 947 816 164 26 52 chr4 47501003 47501157 -108128963 + B1_Mur4 SINE Alu 1 150 0 1 947 255 296 73 100 chr4 47501682 47501832 -108128288 + RSINE1 SINE B4 1 146 -19 2 947 414 0 0 0 chr4 47501844 47501890 -108128230 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 947 351 0 0 0 chr4 47501890 47501928 -108128192 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 947 340 198 204 18 chr4 47501967 47502080 -108128040 - B1_Mus1 SINE Alu -13 135 2 5 947 411 350 112 55 chr4 47502570 47502755 -108127365 + MER68 LTR ERVL 2 201 -362 6 947 1090 214 5 0 chr4 47502755 47502965 -108127155 - B3 SINE B2 -4 212 2 7 947 411 353 109 52 chr4 47502965 47503310 -108126810 + MER68 LTR ERVL 202 607 0 6 947 567 250 76 52 chr4 47503812 47504023 -108126097 - CYRA11_Mm Unknown Y-chromosome -230 387 172 8 947 1070 127 6 12 chr4 47503857 47504024 -108126096 + URR1A DNA MER1_type 61 226 0 9 947 307 105 35 0 chr4 47505922 47505979 -108124141 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 947 496 163 109 0 chr4 47505981 47506073 -108124047 - B2_Mm2 SINE B2 -92 103 2 1 947 323 239 7 133 chr4 47506084 47506219 -108123901 - PB1D9 SINE Alu -1 119 2 1 947 307 280 82 51 chr4 47506219 47506234 -108123886 - B4A SINE B4 -59 185 71 1 947 195 167 0 0 chr4 47506636 47506672 -108123448 + MIR SINE MIR 104 139 -69 1 947 254 164 18 0 chr4 47506814 47506869 -108123251 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 947 701 163 0 6 chr4 47507304 47507483 -108122637 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 1 947 333 175 32 0 chr4 47507542 47507605 -108122515 + MTEb LTR MaLR 314 378 -1 1 947 337 311 40 134 chr4 47507757 47507980 -108122140 - MLT1J LTR MaLR -168 344 143 1 947 215 364 0 10 chr4 47508218 47508318 -108121802 + GA-rich Low_complexity Low_complexity 5 103 0 1 947 216 241 0 0 chr4 47508341 47508420 -108121700 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 947 321 159 0 0 chr4 47508517 47508580 -108121540 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 947 3467 25 5 0 chr4 47510222 47510616 -108119504 + MTA_Mm LTR MaLR 1 396 0 2 947 337 192 36 71 chr4 47512477 47512589 -108117531 - L1MB8 LINE L1 -7 6171 6064 2 947 226 292 31 0 chr4 47512821 47512886 -108117234 - L1M5 LINE L1 -397 5767 5701 2 947 787 243 33 22 chr4 47512909 47513090 -108117030 - ID_B1 SINE B4 -8 216 34 2 947 247 310 0 0 chr4 47513254 47513312 -108116808 + MER112 DNA MER1_type 6 63 -198 2 947 345 241 64 18 chr4 47513466 47513576 -108116544 + PB1D7 SINE Alu 3 117 -3 2 947 286 217 0 32 chr4 47513613 47513675 -108116445 + B1_Mur2 SINE Alu 89 148 -1 2 947 305 308 37 49 chr4 47514135 47514299 -108115821 - RSINE1 SINE B4 -1 164 3 2 947 426 314 149 0 chr4 47514731 47514906 -108115214 - MER44B DNA MER2_type -327 223 23 3 947 23 54 0 0 chr4 47514981 47515018 -108115102 + AT_rich Low_complexity Low_complexity 1 37 0 3 947 218 278 80 44 chr4 47515086 47515199 -108114921 - MIRc SINE MIR -110 158 42 3 947 374 312 60 65 chr4 47516224 47516409 -108113711 + MIRb SINE MIR 22 205 -63 3 947 609 58 0 0 chr4 47516478 47516564 -108113556 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 3 947 546 229 9 0 chr4 47516569 47516674 -108113446 - PB1D10 SINE Alu -11 106 1 3 947 767 238 68 28 chr4 47516885 47517062 -108113058 + B4 SINE B4 10 193 -99 3 947 253 226 88 62 chr4 47516970 47517083 -108113037 + PB1D9 SINE Alu 5 120 0 3 947 200 189 0 0 chr4 47517124 47517161 -108112959 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 947 307 0 47 0 chr4 47517286 47517329 -108112791 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 947 500 229 16 32 chr4 47517331 47517457 -108112663 - B4A SINE B4 -23 269 146 4 947 548 257 21 7 chr4 47517503 47517648 -108112472 - B4 SINE B4 -144 148 2 4 947 237 203 56 111 chr4 47518725 47518797 -108111323 + PB1D7 SINE Alu 17 84 -36 4 947 540 177 11 6 chr4 47518907 47519083 -108111037 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 947 438 216 13 0 chr4 47519105 47519339 -108110781 + (CA)n Simple_repeat Simple_repeat 1 237 0 4 947 324 0 0 25 chr4 47519345 47519385 -108110735 + HAL1-3A_ME LINE L1 1978 2016 -842 4 947 273 264 0 42 chr4 47521350 47521445 -108108675 + CT-rich Low_complexity Low_complexity 2 92 0 4 947 369 273 26 43 chr4 47521527 47521642 -108108478 + RSINE1 SINE B4 47 159 -6 4 947 21 36 0 0 chr4 47521644 47521672 -108108448 + AT_rich Low_complexity Low_complexity 1 28 0 4 947 530 311 38 19 chr4 47522060 47522273 -108107847 - L1MA6 LINE L1 -74 6226 6010 4 947 300 53 0 0 chr4 47522320 47522358 -108107762 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 4 947 389 287 81 27 chr4 47522643 47522829 -108107291 + L1MC4 LINE L1 444 639 -5576 4 947 352 330 0 0 chr4 47522848 47522951 -108107169 + ID_B1 SINE B4 74 176 -48 5 947 468 270 0 0 chr4 47522865 47522965 -108107155 + PB1D10 SINE Alu 10 109 -8 5 947 504 184 47 0 chr4 47523139 47523235 -108106885 - B1_Mur3 SINE Alu -20 100 1 5 947 228 244 12 71 chr4 47523235 47523264 -108106856 + YREP_Mm Unknown Unknown 317 340 -1472 5 947 2842 70 3 8 chr4 47523612 47523986 -108106134 - L1_Mus2 LINE L1 0 6566 6195 5 947 250 229 15 62 chr4 47524908 47524973 -108105147 - B1_Mur1 SINE Alu -27 122 61 5 947 394 191 121 126 chr4 47525266 47525464 -108104656 - B3A SINE B2 -1 197 1 5 947 553 325 103 31 chr4 47525690 47526011 -108104109 - MLT2F LTR ERVL -42 621 278 5 947 276 317 39 10 chr4 47526967 47527069 -108103051 - MIRc SINE MIR -74 194 90 5 947 335 141 16 0 chr4 47528236 47528300 -108101820 + (TTA)n Simple_repeat Simple_repeat 2 66 0 5 947 257 225 362 0 chr4 47528323 47528403 -108101717 - PB1D10 SINE Alu -8 109 1 6 947 649 260 88 0 chr4 47528441 47528633 -108101487 + ID_B1 SINE B4 1 209 -15 6 947 360 248 115 97 chr4 47529531 47529696 -108100424 - RMER30 DNA MER1_type -33 169 2 6 947 286 343 82 76 chr4 47529729 47529972 -108100148 + MLT1J LTR MaLR 6 248 -264 6 947 1364 50 0 11 chr4 47529972 47530154 -108099966 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 947 286 343 82 76 chr4 47530154 47530238 -108099882 + MLT1J LTR MaLR 249 335 -177 6 947 702 216 42 28 chr4 47530233 47530376 -108099744 + RSINE1 SINE B4 8 152 -13 6 947 193 197 72 43 chr4 47530970 47531039 -108099081 - L2c LINE L2 -299 3088 3018 6 947 558 0 0 0 chr4 47531370 47531432 -108098688 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 947 252 0 0 0 chr4 47531675 47531703 -108098417 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 947 256 357 20 34 chr4 47532168 47532316 -108097804 - MIRb SINE MIR -7 261 116 6 947 197 331 122 16 chr4 47532629 47532752 -108097368 - MIRc SINE MIR -118 150 15 7 947 651 144 0 18 chr4 47533725 47533895 -108096225 + (TG)n Simple_repeat Simple_repeat 1 167 0 7 947 436 272 21 163 chr4 47533906 47534172 -108095948 - B4 SINE B4 -109 183 20 7 947 416 232 50 20 chr4 47534191 47534292 -108095828 - PB1D10 SINE Alu -16 104 1 7 947 825 314 16 12 chr4 47535893 47536148 -108093972 - B4A SINE B4 -20 272 17 7 947 365 294 201 22 chr4 47537176 47537360 -108092760 + ID_B1 SINE B4 2 218 -6 7 947 315 0 0 0 chr4 47537360 47537395 -108092725 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 947 4118 149 114 35 chr4 47537622 47538563 -108091557 - RLTR25A LTR ERVK 0 1103 15 7 947 258 213 0 0 chr4 47539259 47539306 -108090814 + MIRm SINE MIR 124 170 -106 7 947 504 45 0 0 chr4 47539577 47539644 -108090476 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 947 369 267 121 141 chr4 47540065 47540363 -108089757 + ORR1E LTR MaLR 6 296 -78 8 947 562 274 21 21 chr4 47540438 47540628 -108089492 + L1ME3A LINE L1 5973 6162 -11 8 947 238 274 34 8 chr4 47540625 47540743 -108089377 + L1M5 LINE L1 5656 5776 -348 8 947 413 73 0 0 chr4 47540819 47540874 -108089246 - ORR1B1 LTR MaLR 0 394 340 8 947 822 214 25 152 chr4 47540874 47541150 -108088970 - RMER1C Other Other -18 1324 1084 8 947 2082 156 3 0 chr4 47541203 47541523 -108088597 - ORR1B2 LTR MaLR -46 321 1 8 947 258 313 32 73 chr4 47542080 47542204 -108087916 - MER5A1 DNA MER1_type -1 165 47 8 947 603 227 0 0 chr4 47543375 47543529 -108086591 + (TA)n Simple_repeat Simple_repeat 2 155 0 8 947 1167 153 108 5 chr4 47544727 47544931 -108085189 + URR1B DNA MER1_type 1 225 0 8 947 997 224 86 0 chr4 47545014 47545224 -108084896 + B4A SINE B4 1 228 -64 8 947 237 309 40 30 chr4 47545227 47545327 -108084793 - L1M1 LINE L1 -817 5486 5386 9 947 1978 240 89 48 chr4 47545340 47545379 -108084741 + Lx8 LINE L1 6786 6843 -630 9 947 1679 153 5 121 chr4 47545379 47545751 -108084369 + ORR1A4 LTR MaLR 1 329 0 9 947 1978 240 89 48 chr4 47545751 47546372 -108083748 + Lx8 LINE L1 6844 7473 0 9 947 216 200 0 22 chr4 47546453 47546499 -108083621 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 947 837 140 26 53 chr4 47546525 47546676 -108083444 - B1_Mur3 SINE Alu -1 148 2 9 947 189 0 0 0 chr4 47547642 47547663 -108082457 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 947 717 282 117 10 chr4 47548725 47549033 -108081087 - L1MA4 LINE L1 -359 5941 5601 9 947 2243 219 57 15 chr4 47549028 47549557 -108080563 - RMER1C Other Other -1 1341 791 9 947 264 281 33 11 chr4 47549620 47549710 -108080410 - RMER1C Other Other -1221 121 30 9 947 1812 309 118 58 chr4 47550012 47551385 -108078735 - L1MA4 LINE L1 -383 5464 4009 9 947 561 272 75 43 chr4 47551392 47551738 -108078382 - L1MA4 LINE L1 -2350 3793 3437 9 947 738 316 59 62 chr4 47551875 47552249 -108077871 + Lx8 LINE L1 6914 7286 -187 9 947 526 263 79 37 chr4 47552743 47552984 -108077136 + MER33 DNA MER1_type 26 276 -48 9 947 934 210 53 19 chr4 47553017 47553226 -108076894 - B3 SINE B2 0 216 1 1 947 243 0 0 0 chr4 47553251 47553278 -108076842 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 947 185 324 47 38 chr4 47553840 47553946 -108076174 + MIRb SINE MIR 119 225 -43 1 947 231 277 16 158 chr4 47554212 47554396 -108075724 + MIRb SINE MIR 34 191 -77 1 947 270 283 82 82 chr4 47554797 47554955 -108075165 - MIR3 SINE MIR -30 178 21 1 947 461 293 107 60 chr4 47555373 47555722 -108074398 + MLT1J2 LTR MaLR 63 439 -5 1 947 189 348 76 51 chr4 47555943 47556061 -108074059 - MIR3 SINE MIR -77 131 11 1 947 201 143 0 0 chr4 47557092 47557127 -108072993 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 947 609 251 175 8 chr4 47557246 47557503 -108072617 - Lx9 LINE L1 -1 7643 7344 1 947 2528 139 7 19 chr4 47557894 47558306 -108071814 + MTB_Mm LTR MaLR 1 407 0 1 947 491 226 0 64 chr4 47558543 47558603 -108071517 + B1_Mur2 SINE Alu 1 59 -90 1 947 3424 35 2 2 chr4 47558603 47558999 -108071121 + MTA_Mm LTR MaLR 1 396 0 1 947 491 226 0 64 chr4 47558999 47559047 -108071073 + B1_Mur2 SINE Alu 60 102 -47 1 947 32854 107 12 10 chr4 47559079 47565277 -108064843 - L1_Mus1 LINE L1 -8 6628 467 1 947 448 242 55 0 chr4 47565727 47565855 -108064265 - MLT1D LTR MaLR -8 497 363 1 947 335 296 110 23 chr4 47565932 47566189 -108063931 - MLT1D LTR MaLR -162 343 56 1 947 241 244 21 62 chr4 47567662 47567758 -108062362 - MLT1A1 LTR MaLR -285 123 32 1 947 318 230 135 0 chr4 47567839 47567913 -108062207 - B4A SINE B4 -202 90 7 1 947 432 0 0 0 chr4 47567937 47567985 -108062135 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 947 17680 20 0 0 chr4 47568008 47570709 -108059411 - L1Md_T LINE L1 0 6582 3882 1 947 1071 23 0 0 chr4 47572565 47572695 -108057425 + (CTGTG)n Simple_repeat Simple_repeat 1 130 0 1 947 198 0 0 0 chr4 47573437 47573459 -108056661 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1 947 4969 234 84 53 chr4 47573677 47575959 -108054161 - Lx5 LINE L1 0 7050 4686 1 947 209 300 43 0 chr4 47576413 47576483 -108053637 - L2c LINE L2 -296 3091 3019 1 947 373 0 0 0 chr4 47576570 47576610 -108053510 - ETnERV2-int LTR ERVK -1787 5619 5580 1 947 276 336 35 0 chr4 47576905 47577018 -108053102 + L1MA5 LINE L1 6176 6292 -8 1 947 565 109 33 25 chr4 47577427 47577549 -108052571 - Lx9 LINE L1 -1 7643 7521 1 947 1238 65 11 3 chr4 47577549 47577927 -108052193 + (TCTA)n Simple_repeat Simple_repeat 1 381 0 1 947 1389 112 79 0 chr4 47577932 47578146 -108051974 - Lx9 LINE L1 -153 7491 7261 1 947 26 0 0 0 chr4 47578955 47578981 -108051139 + AT_rich Low_complexity Low_complexity 1 26 0 1 948 472 346 0 0 chr4 47579998 47580134 -108049986 + RSINE1 SINE B4 2 137 -28 1 948 1161 266 137 58 chr4 47580874 47581844 -108048276 + L1M2 LINE L1 3031 4077 -2066 1 948 980 100 134 12 chr4 47582034 47582206 -108047914 + B2_Mm2 SINE B2 2 194 -1 1 948 198 263 0 0 chr4 47582409 47582466 -108047654 + (CAGAGA)n Simple_repeat Simple_repeat 1 57 0 1 948 224 212 61 24 chr4 47582780 47582862 -108047258 + (CATCC)n Simple_repeat Simple_repeat 1 85 0 1 948 1457 250 13 16 chr4 47582921 47583295 -108046825 - MTEb LTR MaLR -2 377 5 1 948 286 221 66 104 chr4 47584187 47584207 -108045913 - ID_B1 SINE B4 0 224 123 1 948 492 128 116 0 chr4 47584207 47584293 -108045827 - B1F2 SINE Alu -12 137 42 1 948 652 186 8 15 chr4 47584293 47584424 -108045696 + (TCTCTG)n Simple_repeat Simple_repeat 5 134 0 1 948 282 29 0 0 chr4 47584612 47584647 -108045473 + (T)n Simple_repeat Simple_repeat 1 35 0 1 948 27 29 0 0 chr4 47587138 47587172 -108042948 + AT_rich Low_complexity Low_complexity 1 34 0 1 948 198 0 0 0 chr4 47587915 47587937 -108042183 + (T)n Simple_repeat Simple_repeat 1 22 0 1 948 936 191 230 4 chr4 47588410 47588688 -108041432 - MTD LTR MaLR -54 365 25 1 948 295 308 23 91 chr4 47589829 47589961 -108040159 - ORR1E LTR MaLR -185 174 52 1 948 306 237 194 0 chr4 47589986 47590079 -108040041 - MIRb SINE MIR -103 165 55 1 948 788 278 23 59 chr4 47592150 47592406 -108037714 - B4A SINE B4 -43 249 3 1 948 428 267 26 38 chr4 47593485 47593665 -108036455 - MTEb LTR MaLR -3 376 173 1 948 815 286 83 16 chr4 47593929 47593996 -108036124 + B4A SINE B4 16 81 -211 1 948 576 0 0 0 chr4 47593996 47594060 -108036060 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 948 815 286 83 16 chr4 47594060 47594244 -108035876 + B4A SINE B4 82 284 -8 1 948 908 124 6 0 chr4 47594253 47594431 -108035689 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 948 329 131 0 16 chr4 47594934 47594996 -108035124 + (TTCCC)n Simple_repeat Simple_repeat 2 62 0 1 948 1041 72 0 0 chr4 47594996 47595135 -108034985 + (TTCC)n Simple_repeat Simple_repeat 4 142 0 1 948 21 0 0 0 chr4 47596246 47596267 -108033853 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 651 198 172 12 chr4 47596317 47596486 -108033634 - B3 SINE B2 -2 214 19 1 948 808 244 156 14 chr4 47596603 47596886 -108033234 + MTEa LTR MaLR 53 375 -4 1 948 392 324 63 11 chr4 47600659 47600834 -108029286 + MER58A DNA MER1_type 36 219 -5 1 948 1078 303 47 19 chr4 47601171 47601531 -108028589 + MTE2b LTR MaLR 10 379 0 1 948 204 330 96 0 chr4 47601999 47602114 -108028006 - MIRb SINE MIR -115 153 28 1 948 1267 309 82 8 chr4 47602175 47602816 -108027304 + L1ME1 LINE L1 5334 6007 -177 1 948 294 315 162 5 chr4 47603871 47604056 -108026064 - B4A SINE B4 -76 216 3 1 948 299 272 119 34 chr4 47604765 47604883 -108025237 - MER20 DNA MER1_type -91 128 1 1 948 715 267 70 56 chr4 47607588 47607890 -108022230 + ORR1E LTR MaLR 39 344 -15 1 948 613 231 15 0 chr4 47608049 47608183 -108021937 - B1_Mur1 SINE Alu -13 136 1 1 948 324 307 111 35 chr4 47609571 47609743 -108020377 - MER20 DNA MER1_type -2 217 33 1 948 22 0 0 0 chr4 47610017 47610039 -108020081 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 390 42 0 0 chr4 47610250 47610298 -108019822 + (TAA)n Simple_repeat Simple_repeat 1 48 0 1 948 461 17 0 17 chr4 47610877 47610936 -108019184 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 948 218 333 0 0 chr4 47612422 47612479 -108017641 - L3 LINE CR1 -130 4359 4303 1 948 182 322 0 61 chr4 47612587 47612653 -108017467 - MIR SINE MIR 0 262 201 1 948 348 268 20 55 chr4 47613005 47613151 -108016969 - LTR16A1 LTR ERVL -9 447 307 1 948 405 302 96 28 chr4 47613156 47613333 -108016787 - MER53 DNA hAT -2 191 3 1 948 251 308 39 0 chr4 47613338 47613416 -108016704 - MER81 DNA AcHobo -1 113 33 1 948 252 300 29 29 chr4 47613589 47613692 -108016428 - LTR16A1 LTR ERVL -311 145 43 1 948 217 273 30 15 chr4 47614619 47614686 -108015434 + MIRc SINE MIR 74 141 -127 1 948 941 308 3 25 chr4 47614746 47615029 -108015091 + B4A SINE B4 6 282 -10 1 948 322 252 0 20 chr4 47615139 47615240 -108014880 - Lx8 LINE L1 0 7473 7375 1 948 351 0 0 0 chr4 47616231 47616270 -108013850 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 948 459 0 0 0 chr4 47616270 47616320 -108013800 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 948 316 250 32 11 chr4 47616585 47616678 -108013442 + GA-rich Low_complexity Low_complexity 2 96 0 1 948 198 118 0 0 chr4 47616898 47616932 -108013188 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 1 948 494 277 0 0 chr4 47617403 47617515 -108012605 + ID_B1 SINE B4 82 193 -31 1 948 361 325 8 8 chr4 47617515 47617530 -108012590 + B1_Mus2 SINE Alu 1 127 -20 1 948 509 295 23 30 chr4 47617543 47617676 -108012444 + RSINE1 SINE B4 17 148 -17 1 948 885 107 0 0 chr4 47617690 47617839 -108012281 + (CA)n Simple_repeat Simple_repeat 1 149 0 1 948 553 257 77 19 chr4 47617930 47618085 -108012035 + RSINE1 SINE B4 2 165 0 1 948 465 66 0 0 chr4 47618328 47618389 -108011731 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 948 260 188 23 34 chr4 47619436 47619524 -108010596 + A-rich Low_complexity Low_complexity 4 90 0 1 948 183 267 22 0 chr4 47619892 47619937 -108010183 + MIRb SINE MIR 33 78 -190 1 948 483 330 175 20 chr4 47620460 47620757 -108009363 + LTR16B2 LTR ERVL 43 385 -77 1 948 276 345 7 39 chr4 47620963 47621117 -108009003 - MIRm SINE MIR -127 149 1 1 948 822 104 35 0 chr4 47621127 47621300 -108008820 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 948 237 256 186 50 chr4 47621367 47621507 -108008613 - MIR SINE MIR -91 171 13 1 948 486 285 38 8 chr4 47622123 47622254 -108007866 - B1F SINE Alu -14 135 1 1 948 285 363 82 0 chr4 47622254 47622282 -108007838 - B4 SINE B4 -201 91 53 1 948 340 352 30 23 chr4 47622306 47622437 -108007683 + MIRb SINE MIR 42 173 -95 1 948 242 333 127 8 chr4 47622955 47623073 -108007047 - MER117 DNA MER1_type -30 167 36 1 948 290 333 41 0 chr4 47623105 47623228 -108006892 + MIR SINE MIR 16 143 -65 1 948 2126 239 60 7 chr4 47623260 47623724 -108006396 - Lx6 LINE L1 -172 7288 6800 1 948 229 295 107 67 chr4 47624265 47624414 -108005706 + MIR3 SINE MIR 35 189 -19 1 948 1426 236 32 14 chr4 47624540 47624910 -108005210 + MTEa LTR MaLR 3 379 0 1 948 319 312 54 94 chr4 47624915 47625138 -108004982 + MLT1N2 LTR MaLR 22 235 -270 1 948 34 0 0 0 chr4 47625515 47625549 -108004571 + AT_rich Low_complexity Low_complexity 1 34 0 1 948 365 320 39 8 chr4 47626129 47626258 -108003862 + MLT1N2 LTR MaLR 430 562 0 1 948 7364 42 3 0 chr4 47626776 47627652 -108002468 + L1Md_F2 LINE L1 5704 6582 0 1 948 890 278 15 0 chr4 47627680 47627885 -108002235 + ID_B1 SINE B4 1 208 -16 1 948 249 155 0 0 chr4 47627887 47627945 -108002175 + T-rich Low_complexity Low_complexity 1 58 0 2 948 1452 295 113 16 chr4 47628175 47628519 -108001601 + MER82 DNA MER2_type 33 407 -246 2 948 231 61 0 0 chr4 47628519 47628552 -108001568 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 948 1452 295 113 16 chr4 47628552 47628772 -108001348 + MER82 DNA MER2_type 408 652 -1 2 948 247 80 39 20 chr4 47629243 47629294 -108000826 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 2 948 559 269 210 15 chr4 47629334 47629534 -108000586 - Lx8 LINE L1 -386 7087 6849 2 948 2174 317 27 19 chr4 47629662 47630410 -107999710 + Lx8 LINE L1 6097 6850 -623 2 948 696 340 44 24 chr4 47630592 47630887 -107999233 - RMER15 LTR ERVL -14 561 261 2 948 390 340 7 34 chr4 47631554 47631700 -107998420 + MIR SINE MIR 100 241 -21 2 948 246 312 71 17 chr4 47631885 47632074 -107998046 - MIR SINE MIR 0 268 67 2 948 180 278 40 125 chr4 47632720 47632872 -107997248 - L3 LINE CR1 -95 4394 4256 2 948 270 0 0 0 chr4 47633538 47633568 -107996552 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 2 948 227 162 162 0 chr4 47634541 47634609 -107995511 + L1MEc LINE L1 238 316 -6084 2 948 390 57 0 0 chr4 47636869 47636922 -107993198 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2 948 1108 215 9 5 chr4 47637528 47637738 -107992382 + B3 SINE B2 6 216 0 2 948 703 245 7 20 chr4 47637993 47638143 -107991977 + RSINE1 SINE B4 12 159 -6 2 948 218 380 70 35 chr4 47638143 47638192 -107991928 + B3 SINE B2 11 216 0 2 948 767 296 39 27 chr4 47638241 47638498 -107991622 - MER2 DNA MER2_type -3 342 83 2 948 594 0 0 0 chr4 47639703 47639769 -107990351 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 948 578 282 163 62 chr4 47639883 47640139 -107989981 + MTE-int LTR MaLR 695 1055 -525 2 948 804 287 79 0 chr4 47640786 47640988 -107989132 + MER58A DNA MER1_type 7 224 0 2 948 474 282 164 53 chr4 47641204 47641691 -107988429 - L2 LINE L2 -443 2976 2436 2 948 220 299 80 0 chr4 47641752 47641838 -107988282 - PB1D7 SINE Alu -17 100 1 2 948 216 300 17 0 chr4 47642299 47642359 -107987761 - ID4_ SINE ID -21 62 2 2 948 22 0 0 0 chr4 47642364 47642386 -107987734 + AT_rich Low_complexity Low_complexity 1 22 0 2 948 401 322 142 43 chr4 47642721 47643110 -107987010 - MLT1I LTR MaLR -33 479 59 2 948 240 257 131 75 chr4 47644176 47644336 -107985784 - MLT1L LTR MaLR -48 562 380 2 948 21 0 0 0 chr4 47644836 47644857 -107985263 + AT_rich Low_complexity Low_complexity 1 21 0 2 948 300 286 111 10 chr4 47644942 47645041 -107985079 - L1M5 LINE L1 -2717 3429 3321 2 948 679 288 45 101 chr4 47645498 47645873 -107984247 + ORR1E LTR MaLR 1 354 -5 2 948 4587 283 69 37 chr4 47645878 47647357 -107982763 + ORR1E-int LTR MaLR 3 1529 -51 2 948 876 314 59 59 chr4 47647357 47647425 -107982695 + ORR1E LTR MaLR 3 70 -289 2 948 2185 109 0 71 chr4 47647425 47647779 -107982341 + ORR1A4 LTR MaLR 1 329 0 2 948 876 314 59 59 chr4 47647779 47648065 -107982055 + ORR1E LTR MaLR 71 357 -2 2 948 1037 314 144 35 chr4 47648076 47648499 -107981621 + MLT1D LTR MaLR 36 504 -1 2 948 250 339 34 8 chr4 47649233 47649352 -107980768 - L2 LINE L2 -1379 2040 1919 2 948 656 311 174 35 chr4 47649788 47650191 -107979929 + LTR16C LTR ERVL 31 489 0 2 948 349 292 134 25 chr4 47650533 47650821 -107979299 + MLT1D LTR MaLR 154 457 -10 2 948 220 343 77 0 chr4 47651404 47651547 -107978573 - MIRc SINE MIR -82 186 33 2 948 355 296 0 0 chr4 47651940 47652028 -107978092 + MIR3 SINE MIR 97 184 -24 2 948 802 221 18 4 chr4 47653314 47653511 -107976609 + RMER21A LTR ERV1 687 947 0 2 948 546 0 40 0 chr4 47653765 47653839 -107976281 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 948 477 50 0 0 chr4 47653839 47653898 -107976222 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 948 180 357 73 48 chr4 47654348 47654513 -107975607 + MIR SINE MIR 6 174 -88 2 948 379 327 57 92 chr4 47657071 47657300 -107972820 - MLT1K LTR MaLR -8 587 367 2 948 226 171 98 0 chr4 47657423 47657464 -107972656 - B4 SINE B4 -238 54 10 2 948 385 407 91 23 chr4 47658955 47659395 -107970725 + L1ME4a LINE L1 5635 6104 -20 2 948 205 214 0 23 chr4 47659489 47659532 -107970588 - L3 LINE CR1 -122 4367 4326 2 948 1479 222 58 87 chr4 47659893 47660307 -107969813 - MTD LTR MaLR 0 419 18 2 948 325 316 55 43 chr4 47661284 47661451 -107968669 - MIR3 SINE MIR -25 183 10 2 948 396 181 0 0 chr4 47665345 47665428 -107964692 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 948 476 254 78 56 chr4 47665471 47665613 -107964507 + MLT1F LTR MaLR 202 346 -202 2 948 351 320 128 39 chr4 47665745 47665901 -107964219 + MLT1F LTR MaLR 400 569 0 2 948 315 0 0 0 chr4 47666299 47666334 -107963786 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 948 268 148 0 32 chr4 47666403 47666466 -107963654 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 948 545 221 174 24 chr4 47666597 47666764 -107963356 - B3A SINE B2 -6 192 1 2 948 386 306 120 69 chr4 47666824 47666857 -107963263 - B4A SINE B4 -3 289 268 2 948 486 0 0 0 chr4 47666857 47666911 -107963209 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 948 386 306 120 69 chr4 47666911 47667151 -107962969 - B4A SINE B4 -25 267 2 2 948 369 62 0 0 chr4 47667206 47667254 -107962866 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2 948 393 346 53 10 chr4 47667695 47667902 -107962218 - MIR SINE MIR -24 238 23 2 948 1879 167 103 58 chr4 47668577 47669004 -107961116 + RLTR41 LTR ERV1 1 446 0 2 948 549 283 7 14 chr4 47669127 47669267 -107960853 - RSINE1 SINE B4 -23 142 4 2 948 186 150 0 0 chr4 47669591 47669631 -107960489 + (TGGGGG)n Simple_repeat Simple_repeat 6 45 0 2 948 906 169 0 0 chr4 47669789 47669955 -107960165 + (TA)n Simple_repeat Simple_repeat 2 167 0 2 948 211 40 0 0 chr4 47669955 47669980 -107960140 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 948 497 213 0 27 chr4 47671889 47672000 -107958120 + PB1D10 SINE Alu 8 115 -2 2 948 919 235 15 10 chr4 47672042 47672248 -107957872 + B3 SINE B2 9 215 -1 2 948 22 0 0 0 chr4 47672249 47672271 -107957849 + AT_rich Low_complexity Low_complexity 1 22 0 2 948 307 258 0 0 chr4 47672281 47672347 -107957773 + ID4_ SINE ID 1 66 -17 2 948 1483 70 16 0 chr4 47672394 47672581 -107957539 + B2_Mm2 SINE B2 2 191 -4 2 948 367 322 118 0 chr4 47673353 47673564 -107956556 - MLT1F2 LTR MaLR -23 546 308 2 948 737 22 11 0 chr4 47673643 47673734 -107956386 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 2 948 552 330 58 18 chr4 47675730 47676005 -107954115 + B4 SINE B4 3 288 -4 2 948 233 222 0 0 chr4 47676503 47676548 -107953572 - 5S rRNA rRNA -76 45 1 2 948 803 323 60 34 chr4 47676671 47677206 -107952914 - L1ME2 LINE L1 -46 6118 5570 2 948 955 270 32 18 chr4 47680413 47680696 -107949424 - B4A SINE B4 -1 291 5 2 948 263 327 159 7 chr4 47680848 47680999 -107949121 - LTR78 LTR ERV1 -1075 229 56 2 948 430 254 74 22 chr4 47681810 47682053 -107948067 + LTR37B LTR ERV1 189 424 -44 2 948 273 299 29 155 chr4 47682051 47682225 -107947895 + B3 SINE B2 65 216 0 2 948 588 228 22 7 chr4 47682258 47682395 -107947725 + B1_Mur1 SINE Alu 9 147 -2 2 948 213 400 29 0 chr4 47682760 47682900 -107947220 + L2b LINE L2 3003 3146 -229 2 948 1194 233 121 41 chr4 47683618 47683958 -107946162 - ORR1D2 LTR MaLR 0 370 4 2 948 15372 128 41 11 chr4 47684688 47685950 -107944170 + Lx5 LINE L1 3294 4596 -1281 2 948 180 0 0 0 chr4 47685950 47685970 -107944150 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 2 948 15372 128 41 11 chr4 47685970 47685985 -107944135 + Lx5 LINE L1 4597 4603 -1274 2 948 489 34 0 0 chr4 47685985 47686044 -107944076 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 948 15372 140 53 20 chr4 47686044 47688392 -107941728 + Lx5 LINE L1 4604 7050 0 2 948 207 134 42 69 chr4 47688706 47688778 -107941342 + (TTAAA)n Simple_repeat Simple_repeat 1 70 0 2 948 1010 228 24 0 chr4 47688945 47689151 -107940969 + B3 SINE B2 1 211 -5 2 948 261 300 18 18 chr4 47689180 47689292 -107940828 - Lx8 LINE L1 -3 7470 7359 2 948 1239 295 90 9 chr4 47689341 47689796 -107940324 - Lx8 LINE L1 -26 7447 6956 2 948 750 262 0 22 chr4 47689831 47690014 -107940106 + B3A SINE B2 4 182 -16 2 948 27 29 0 0 chr4 47690027 47690061 -107940059 + AT_rich Low_complexity Low_complexity 1 34 0 2 948 998 39 8 0 chr4 47691010 47691137 -107938983 + (GA)n Simple_repeat Simple_repeat 2 129 0 2 948 195 49 23 47 chr4 47691773 47691816 -107938304 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 948 210 37 0 0 chr4 47693112 47693139 -107936981 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 948 185 369 0 0 chr4 47693700 47693765 -107936355 + L2a LINE L2 3362 3426 0 2 948 23 0 0 0 chr4 47694660 47694683 -107935437 + AT_rich Low_complexity Low_complexity 1 23 0 2 948 8619 34 3 2 chr4 47694820 47696337 -107933783 - L1Md_F3 LINE L1 0 6584 5069 2 948 947 172 76 0 chr4 47696326 47696524 -107933596 + L1Md_A LINE L1 371 583 -6141 2 948 35 24 0 0 chr4 47696712 47696754 -107933366 + AT_rich Low_complexity Low_complexity 1 42 0 2 948 25 0 0 0 chr4 47697731 47697756 -107932364 + GC_rich Low_complexity Low_complexity 1 25 0 2 948 234 0 0 0 chr4 47698157 47698183 -107931937 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 948 209 184 26 0 chr4 47698184 47698222 -107931898 + GA-rich Low_complexity Low_complexity 1 39 0 2 948 577 280 124 5 chr4 47698287 47698481 -107931639 + ID_B1 SINE B4 8 224 0 2 948 257 333 0 0 chr4 47698533 47698629 -107931491 - L2a LINE L2 -5 3421 3326 2 948 247 179 74 37 chr4 47698923 47699004 -107931116 - L2 LINE L2 -483 2936 2853 2 948 252 288 0 0 chr4 47699226 47699299 -107930821 - L2 LINE L2 -750 2669 2597 2 948 407 307 107 0 chr4 47699558 47699708 -107930412 - MER5A DNA MER1_type 0 189 24 3 948 391 276 9 37 chr4 47699845 47699954 -107930166 + PB1D10 SINE Alu 3 108 -9 3 948 385 219 181 0 chr4 47700225 47700330 -107929790 + B1_Mur1 SINE Alu 1 124 -25 3 948 470 139 12 0 chr4 47700357 47700443 -107929677 + GA-rich Low_complexity Low_complexity 2 88 0 3 948 795 75 0 0 chr4 47700628 47700735 -107929385 + (GAA)n Simple_repeat Simple_repeat 2 108 0 3 948 3262 55 5 0 chr4 47701013 47701411 -107928709 - MTB LTR MaLR 0 400 1 3 948 1206 164 273 40 chr4 47701853 47702157 -107927963 + ORR1C1 LTR MaLR 1 375 -3 3 948 282 266 46 23 chr4 47702254 47702385 -107927735 + L1M LINE L1 5283 5416 -2466 3 948 270 0 0 0 chr4 47702697 47702727 -107927393 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 948 631 289 88 5 chr4 47703100 47703297 -107926823 - B4A SINE B4 -2 290 77 3 948 2165 66 6 59 chr4 47703297 47703634 -107926486 + ORR1A2 LTR MaLR 1 319 -8 3 948 252 255 0 0 chr4 47703637 47703682 -107926438 - B4A SINE B4 -211 81 37 3 948 891 292 87 76 chr4 47703682 47704075 -107926045 + MTD LTR MaLR 1 397 -22 3 948 501 17 0 0 chr4 47704150 47704208 -107925912 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 948 239 381 63 67 chr4 47704820 47705059 -107925061 + MLT1L LTR MaLR 46 283 -327 3 948 423 0 0 0 chr4 47705062 47705109 -107925011 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 3 948 597 28 0 0 chr4 47705109 47705180 -107924940 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 948 832 123 29 14 chr4 47705200 47705340 -107924780 - B1_Mur3 SINE Alu 0 149 8 3 948 227 267 76 22 chr4 47705561 47705653 -107924467 - MLT1A1 LTR MaLR -21 387 291 3 948 524 302 88 36 chr4 47706515 47706953 -107923167 - L1ME4a LINE L1 -12 6112 5636 3 948 1907 135 26 0 chr4 47708405 47708708 -107921412 + ORR1B1 LTR MaLR 84 394 0 3 948 375 23 0 0 chr4 47708774 47708818 -107921302 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 949 985 266 19 80 chr4 47710873 47711184 -107918936 - B4 SINE B4 0 292 1 3 949 387 157 11 22 chr4 47712653 47712744 -107917376 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 949 268 146 0 0 chr4 47712874 47712922 -107917198 - RMER15 LTR ERVL -113 462 415 3 949 219 290 48 16 chr4 47713251 47713314 -107916806 + PB1D7 SINE Alu 19 83 -37 3 949 377 123 15 0 chr4 47713963 47714028 -107916092 + (CAT)n Simple_repeat Simple_repeat 1 66 0 3 949 289 284 67 11 chr4 47714052 47714141 -107915979 - PB1D10 SINE Alu -16 101 8 3 949 212 213 43 0 chr4 47714420 47714467 -107915653 + GA-rich Low_complexity Low_complexity 5 53 0 3 949 1421 223 102 18 chr4 47714910 47715294 -107914826 - MTD LTR MaLR 0 419 4 3 949 326 342 87 15 chr4 47715472 47715668 -107914452 + MLT1D LTR MaLR 5 214 -291 3 949 378 319 38 19 chr4 47715745 47715905 -107914215 + MLT1D LTR MaLR 343 505 0 3 949 281 228 0 12 chr4 47716833 47716913 -107913207 + GA-rich Low_complexity Low_complexity 3 81 0 3 949 321 371 32 32 chr4 47718081 47718301 -107911819 - MIR SINE MIR -31 231 12 3 949 197 281 19 94 chr4 47718348 47718454 -107911666 - MIRb SINE MIR -54 214 117 3 949 355 276 0 0 chr4 47719027 47719125 -107910995 - PB1D10 SINE Alu -11 106 9 3 949 299 301 109 46 chr4 47719763 47720040 -107910080 + MLT1A1 LTR MaLR 63 400 -8 3 949 268 286 61 41 chr4 47720754 47720933 -107909187 - MIR3 SINE MIR -17 191 18 3 949 373 308 53 27 chr4 47721579 47721766 -107908354 + L1MC4a LINE L1 5678 5869 -2013 3 949 662 317 26 15 chr4 47722040 47722260 -107907860 + B4A SINE B4 3 225 -67 3 949 387 0 0 0 chr4 47722260 47722303 -107907817 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 949 662 317 26 15 chr4 47722303 47722351 -107907769 + B4A SINE B4 226 273 -19 3 949 2220 111 6 9 chr4 47723469 47723806 -107906314 - Lx3_Mus LINE L1 -2 7007 6672 3 949 705 114 0 0 chr4 47724396 47724519 -107905601 + (TC)n Simple_repeat Simple_repeat 1 123 0 3 949 414 0 0 0 chr4 47724519 47724565 -107905555 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 949 786 232 26 21 chr4 47724566 47724755 -107905365 - ID_B1 SINE B4 -33 191 2 3 949 189 222 0 22 chr4 47726119 47726165 -107903955 + MIRb SINE MIR 125 169 -99 3 949 349 244 365 10 chr4 47727518 47727721 -107902399 - B4A SINE B4 -16 276 2 3 949 184 354 12 12 chr4 47728743 47728826 -107901294 + L2b LINE L2 2285 2367 -1052 3 949 220 376 49 27 chr4 47729158 47729341 -107900779 + L2b LINE L2 3189 3375 0 3 949 209 30 0 57 chr4 47729590 47729625 -107900495 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 949 309 321 12 0 chr4 47729799 47729880 -107900240 - ID4_ SINE ID 0 83 2 3 949 768 295 20 37 chr4 47729880 47730179 -107899941 - L1MB1 LINE L1 -48 6141 5848 3 949 3404 8 0 0 chr4 47730195 47730571 -107899549 + L1Md_A LINE L1 6207 6582 0 3 949 405 0 0 0 chr4 47730610 47730655 -107899465 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 949 557 297 0 0 chr4 47730664 47730809 -107899311 - L1MB1 LINE L1 -443 5725 5581 3 949 2174 290 81 22 chr4 47730835 47731895 -107898225 - L1MB1 LINE L1 -779 5512 4390 3 949 240 345 34 11 chr4 47731895 47731983 -107898137 - MTD LTR MaLR -1 418 329 3 949 309 255 20 10 chr4 47732326 47732425 -107897695 - L1MB1 LINE L1 -1779 4364 4265 3 949 23 0 0 0 chr4 47732706 47732729 -107897391 + AT_rich Low_complexity Low_complexity 1 23 0 3 949 21 0 0 0 chr4 47732869 47732890 -107897230 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 556 268 0 14 chr4 47733033 47733173 -107896947 - Lx8 LINE L1 -619 6854 6717 3 949 296 83 21 0 chr4 47733180 47733228 -107896892 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 3 949 1409 296 51 66 chr4 47733232 47733822 -107896298 - Lx8 LINE L1 -764 6709 6129 3 949 21 0 0 0 chr4 47733828 47733849 -107896271 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 254 362 123 53 chr4 47734112 47734453 -107895667 + MLT1A0 LTR MaLR 1 365 0 3 949 324 0 0 0 chr4 47734903 47734939 -107895181 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 949 540 221 19 0 chr4 47735147 47735251 -107894869 - B1F SINE Alu -43 106 1 3 949 364 331 38 0 chr4 47735756 47735916 -107894204 + LTR89 LTR ERVL? 252 417 -462 3 949 495 0 0 0 chr4 47736516 47736571 -107893549 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 949 352 261 59 70 chr4 47736954 47737095 -107893025 + MTEa LTR MaLR 163 325 -54 3 949 585 0 0 0 chr4 47737159 47737224 -107892896 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 3 949 288 196 0 0 chr4 47737236 47737292 -107892828 + MTEa LTR MaLR 316 371 -8 3 949 226 358 78 17 chr4 47737329 47737508 -107892612 + L3 LINE CR1 4229 4418 -71 3 949 246 218 0 0 chr4 47739366 47739421 -107890699 + tRNA-Ala-GCA tRNA tRNA 19 73 -2 3 949 847 180 21 78 chr4 47740260 47740453 -107889667 + B3A SINE B2 1 182 -16 3 949 192 224 4 0 chr4 47741054 47741097 -107889023 + MIRc SINE MIR 120 166 -102 3 949 562 283 117 9 chr4 47742587 47742801 -107887319 + B4 SINE B4 56 292 0 3 949 294 239 211 9 chr4 47743140 47743254 -107886866 + RSINE1 SINE B4 4 140 -25 3 949 405 0 0 0 chr4 47743259 47743304 -107886816 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 949 2080 126 133 11 chr4 47743481 47743849 -107886271 - MTC LTR MaLR -8 413 1 3 949 983 219 22 14 chr4 47744011 47744233 -107885887 - ID_B1 SINE B4 0 224 1 3 949 387 231 22 11 chr4 47744996 47745088 -107885032 - MER58B DNA MER1_type -242 99 7 3 949 537 367 54 34 chr4 47746940 47747437 -107882683 - MLT1F2 LTR MaLR -2 558 52 3 949 182 321 63 13 chr4 47753025 47753104 -107877016 - MIRm SINE MIR -172 104 22 3 949 200 371 93 44 chr4 47754140 47754227 -107875893 + L2a LINE L2 2464 2553 -866 3 949 279 0 0 0 chr4 47754227 47754258 -107875862 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 949 200 371 93 44 chr4 47754258 47754514 -107875606 + L2a LINE L2 2554 2824 -595 3 949 230 335 93 13 chr4 47754628 47754779 -107875341 + L2a LINE L2 2992 3154 -272 3 949 248 209 46 11 chr4 47754806 47754893 -107875227 + (CTATA)n Simple_repeat Simple_repeat 5 94 0 3 949 558 198 17 8 chr4 47755641 47755758 -107874362 + PB1D9 SINE Alu 2 119 -1 3 949 221 377 17 17 chr4 47755822 47755938 -107874182 - MIRc SINE MIR -121 147 32 3 949 399 294 122 81 chr4 47756667 47756890 -107873230 - ORR1E LTR MaLR -138 232 1 3 949 439 294 54 88 chr4 47757947 47758152 -107871968 - B3A SINE B2 0 198 1 3 949 857 228 44 0 chr4 47758233 47758413 -107871707 - B3 SINE B2 -28 188 1 3 949 564 298 109 28 chr4 47758442 47758725 -107871395 - ORR1E LTR MaLR -6 353 48 3 949 503 259 149 30 chr4 47760328 47760563 -107869557 - MLT1C LTR MaLR -35 432 170 3 949 186 133 0 0 chr4 47760992 47761022 -107869098 + (TATG)n Simple_repeat Simple_repeat 1 30 0 3 949 833 248 136 42 chr4 47761024 47761289 -107868831 - B4 SINE B4 0 292 3 3 949 201 244 0 22 chr4 47761564 47761610 -107868510 + MIR SINE MIR 103 147 -61 3 949 636 254 58 87 chr4 47761924 47762200 -107867920 + B4A SINE B4 2 269 -23 3 949 410 76 0 29 chr4 47762202 47762270 -107867850 + (CATA)n Simple_repeat Simple_repeat 3 68 0 3 949 15322 19 2 0 chr4 47762834 47765254 -107864866 - L1Md_T LINE L1 0 6582 4159 3 949 207 100 0 0 chr4 47765387 47765417 -107864703 + (TCCCC)n Simple_repeat Simple_repeat 2 31 0 3 949 936 111 19 0 chr4 47765417 47765579 -107864541 + (TC)n Simple_repeat Simple_repeat 1 165 0 3 949 255 103 0 0 chr4 47765851 47765890 -107864230 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 949 2309 105 32 0 chr4 47766123 47766438 -107863682 + ORR1A2 LTR MaLR 3 327 0 3 949 543 271 89 31 chr4 47766941 47767166 -107862954 + MTEb LTR MaLR 138 375 -4 3 949 408 348 39 0 chr4 47767203 47767358 -107862762 + MIR SINE MIR 46 206 -56 3 949 297 340 31 50 chr4 47768392 47768553 -107861567 - MLT1A LTR MaLR -216 158 1 3 949 1211 225 251 14 chr4 47769358 47769800 -107860320 + RMER15 LTR ERVL 29 575 0 3 949 225 354 32 59 chr4 47769961 47770180 -107859940 + MIRb SINE MIR 55 267 -1 4 949 1305 274 95 70 chr4 47771161 47771880 -107858240 + L1MC4 LINE L1 6568 7304 -738 4 949 27158 128 13 152 chr4 47771885 47774276 -107855844 + Lx LINE L1 397 2454 -3429 4 949 225 0 0 0 chr4 47774276 47774301 -107855819 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 949 27158 151 17 5 chr4 47774301 47777058 -107853062 + Lx LINE L1 2455 5245 -638 4 949 5205 90 4 6 chr4 47777058 47777776 -107852344 + L1_Mus1 LINE L1 5851 6567 0 4 949 6846 120 39 10 chr4 47777776 47779025 -107851095 + Lx LINE L1 5247 6514 -140 4 949 198 71 0 0 chr4 47779025 47779053 -107851067 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 4 949 6846 110 47 10 chr4 47779053 47779170 -107850950 + Lx LINE L1 6515 6654 0 4 949 606 155 0 0 chr4 47779213 47779329 -107850791 + GA-rich Low_complexity Low_complexity 3 118 0 4 949 404 103 60 30 chr4 47779331 47779431 -107850689 + MusHAL1 LINE L1 2596 2698 -14 4 949 581 305 244 31 chr4 47779446 47779817 -107850303 + L1MC4 LINE L1 7339 7802 -240 4 949 3243 46 5 5 chr4 47779817 47780213 -107849907 - MTA_Mm LTR MaLR 0 396 1 4 949 581 305 244 31 chr4 47780213 47780386 -107849734 + L1MC4 LINE L1 7803 7999 -43 4 949 790 233 31 31 chr4 47780403 47780598 -107849522 - B3A SINE B2 0 198 4 4 949 1917 84 276 3 chr4 47780748 47781117 -107849003 + RLTR44C LTR ERVK 30 499 -3 4 949 24 0 0 0 chr4 47781270 47781294 -107848826 + AT_rich Low_complexity Low_complexity 1 24 0 4 949 270 336 140 11 chr4 47781718 47782004 -107848116 + L1M5 LINE L1 2184 2506 -3640 4 949 1234 197 5 5 chr4 47782215 47782439 -107847681 + URR1B DNA MER1_type 2 225 0 4 949 560 264 133 40 chr4 47782530 47783083 -107847037 + L1M5 LINE L1 2869 3500 -2646 4 949 225 200 22 0 chr4 47783127 47783172 -107846948 + Lx8 LINE L1 5849 5894 -1579 4 949 203 175 0 0 chr4 47783708 47783748 -107846372 + A-rich Low_complexity Low_complexity 1 40 0 4 949 500 100 12 0 chr4 47784560 47784640 -107845480 + (CTCA)n Simple_repeat Simple_repeat 1 81 0 4 949 297 237 0 2 chr4 47786005 47786076 -107844044 + MLT1A0 LTR MaLR 15 84 -324 4 949 228 338 43 57 chr4 47786093 47786234 -107843886 + RMER1B Other Other 2 140 -926 4 949 268 294 0 66 chr4 47786301 47786392 -107843728 + RMER1C Other Other 34 118 -1224 4 949 2885 255 110 16 chr4 47786455 47787288 -107842832 + RMER1C Other Other 430 1341 -1 4 949 492 117 0 0 chr4 47787353 47787430 -107842690 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 949 443 359 34 64 chr4 47787430 47787725 -107842395 + MLT1A0 LTR MaLR 80 365 0 4 949 261 139 0 0 chr4 47788137 47788180 -107841940 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 949 318 244 72 29 chr4 47788844 47788983 -107841137 + L1MB2 LINE L1 6012 6156 -15 4 949 810 190 14 0 chr4 47789422 47789564 -107840556 + B1_Mur4 SINE Alu 1 144 -6 4 949 287 151 27 0 chr4 47789565 47789638 -107840482 + (CAGAGA)n Simple_repeat Simple_repeat 3 77 0 4 949 798 259 0 50 chr4 47789708 47789907 -107840213 + B3A SINE B2 1 189 -9 4 949 361 296 48 21 chr4 47790218 47790363 -107839757 - MER58A DNA MER1_type -73 151 3 4 949 1731 268 35 2 chr4 47791981 47792415 -107837705 + Lx6 LINE L1 6986 7433 -27 4 949 263 150 0 0 chr4 47792646 47792686 -107837434 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 4 949 210 191 0 0 chr4 47792686 47792728 -107837392 + CT-rich Low_complexity Low_complexity 4 45 0 4 949 708 138 0 0 chr4 47792726 47792842 -107837278 + (TCC)n Simple_repeat Simple_repeat 3 118 0 4 949 346 280 0 48 chr4 47792942 47793047 -107837073 - PB1D10 SINE Alu -5 112 13 4 949 283 310 123 9 chr4 47793232 47793346 -107836774 - LTR33 LTR ERVL -56 459 333 4 949 393 127 123 27 chr4 47793488 47793561 -107836559 + PB1D10 SINE Alu 36 115 -2 4 949 318 0 46 46 chr4 47793646 47793711 -107836409 + (CAAAA)n Simple_repeat Simple_repeat 4 68 0 4 949 2140 135 13 29 chr4 47794194 47794568 -107835552 + Lx2 LINE L1 6630 6997 0 4 949 233 327 118 68 chr4 47794906 47795212 -107834908 + L1M5 LINE L1 4189 4485 -1661 4 949 1061 99 52 0 chr4 47795212 47795384 -107834736 + Lx3_Mus LINE L1 6827 7007 -2 4 949 293 290 174 23 chr4 47795384 47795621 -107834499 + L1M5 LINE L1 4486 4759 -1387 4 949 235 331 92 0 chr4 47795628 47795758 -107834362 + B1F1 SINE Alu 2 143 -6 4 949 1655 183 87 20 chr4 47796794 47797173 -107832947 - MTD LTR MaLR -16 403 1 4 949 203 175 0 0 chr4 47797173 47797213 -107832907 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 949 779 239 0 47 chr4 47798594 47798715 -107831405 - RSINE1 SINE B4 0 165 48 4 949 2209 124 9 12 chr4 47798715 47799042 -107831078 + ORR1A2 LTR MaLR 2 327 0 4 949 779 239 0 47 chr4 47799042 47799091 -107831029 - RSINE1 SINE B4 -118 47 3 4 949 561 319 87 14 chr4 47799305 47799524 -107830596 + B4A SINE B4 44 278 -14 4 949 1522 35 0 0 chr4 47799589 47799763 -107830357 + L1Md_F2 LINE L1 5413 5586 -297 4 949 8394 33 6 0 chr4 47799764 47800740 -107829380 + L1Md_F2 LINE L1 5588 6569 -13 4 949 272 315 15 23 chr4 47801057 47801190 -107828930 - MIR SINE MIR -64 198 67 4 949 393 22 0 0 chr4 47801192 47801238 -107828882 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 949 385 277 143 0 chr4 47803190 47803309 -107826811 + B4A SINE B4 151 286 -6 4 949 208 277 29 44 chr4 47803314 47803382 -107826738 + (CATG)n Simple_repeat Simple_repeat 3 69 0 4 949 840 117 0 0 chr4 47803445 47803608 -107826512 + (TG)n Simple_repeat Simple_repeat 2 164 0 4 949 1143 207 0 13 chr4 47803709 47803934 -107826186 + URR1A DNA MER1_type 1 222 -4 4 949 297 309 114 7 chr4 47804165 47804305 -107825815 - MLT1A0 LTR MaLR 0 365 211 4 949 260 296 110 9 chr4 47804417 47804526 -107825594 - MLT1A0 LTR MaLR -273 135 16 4 949 2684 137 29 2 chr4 47805613 47806023 -107824097 + MTC LTR MaLR 1 421 0 4 949 766 342 125 85 chr4 47806808 47807060 -107823060 + L1MB3 LINE L1 748 1029 -5740 4 949 231 36 0 0 chr4 47807060 47807088 -107823032 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 949 766 342 125 85 chr4 47807088 47807621 -107822499 + L1MB3 LINE L1 1030 1563 -5206 4 949 658 254 97 75 chr4 47807867 47808288 -107821832 + L1MB3 LINE L1 1855 2528 -4321 4 949 1278 205 49 17 chr4 47808415 47808703 -107821417 + ORR1C2 LTR MaLR 88 384 0 4 949 407 252 83 63 chr4 47808808 47809027 -107821093 + L1MB3 LINE L1 2760 2981 -3861 4 949 335 288 135 36 chr4 47809029 47809295 -107820825 + L1MB3 LINE L1 3158 3440 -3405 4 949 227 219 0 0 chr4 47809295 47809336 -107820784 + B1F SINE Alu 30 70 -79 4 949 723 336 17 14 chr4 47809411 47809701 -107820419 + B4A SINE B4 2 292 0 4 949 569 287 34 45 chr4 47809727 47809993 -107820127 + L1MB3 LINE L1 3479 3741 -3101 4 949 201 346 0 13 chr4 47810095 47810174 -107819946 + GA-rich Low_complexity Low_complexity 4 81 0 4 949 764 200 65 4 chr4 47810193 47810424 -107819696 + L1MB3 LINE L1 4222 4466 -2376 4 949 2546 282 126 39 chr4 47810641 47810834 -107819286 + L1MB3 LINE L1 4452 4657 -2185 4 949 1145 130 36 80 chr4 47810834 47811059 -107819061 + B3 SINE B2 2 216 0 4 949 2546 282 126 39 chr4 47811059 47811234 -107818886 + L1MB3 LINE L1 4658 4867 -1975 4 949 378 0 0 0 chr4 47811234 47811276 -107818844 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 949 2546 282 126 39 chr4 47811276 47811356 -107818764 + L1MB3 LINE L1 4868 4961 -1881 4 949 459 113 0 0 chr4 47811356 47811427 -107818693 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 949 2546 282 126 39 chr4 47811427 47812426 -107817694 + L1MB3 LINE L1 4962 6026 -816 4 949 243 306 14 0 chr4 47812429 47812501 -107817619 + B4A SINE B4 3 75 -217 4 949 549 0 0 0 chr4 47812555 47812616 -107817504 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 949 7872 80 21 2 chr4 47812676 47814038 -107816082 - L1_Mus3 LINE L1 0 6638 5250 4 949 252 305 76 0 chr4 47814541 47814656 -107815464 - L2b LINE L2 -5 3421 3287 4 949 188 277 21 0 chr4 47814738 47814785 -107815335 - L2b LINE L2 -212 3163 3116 4 949 1164 61 7 0 chr4 47814955 47815102 -107815018 - B1_Mus1 SINE Alu 0 148 1 4 949 456 338 37 31 chr4 47816467 47816849 -107813271 + L1MB3 LINE L1 6500 6883 -2 4 949 314 359 55 30 chr4 47817531 47817695 -107812425 + LTR16A LTR ERVL 1 168 -283 4 949 406 96 27 0 chr4 47817916 47817989 -107812131 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 949 487 310 82 22 chr4 47818072 47818303 -107811817 - MLT1D LTR MaLR -2 503 259 4 949 680 201 13 22 chr4 47818325 47818513 -107811607 + B3 SINE B2 8 190 -5 4 949 1231 48 0 0 chr4 47818609 47818756 -107811364 + B1_Mm SINE Alu 1 147 0 4 949 255 320 17 98 chr4 47818781 47818954 -107811166 - MLT1D LTR MaLR -346 159 1 4 949 871 261 29 124 chr4 47819065 47819297 -107810823 + B4A SINE B4 8 216 -76 4 949 243 0 0 0 chr4 47819297 47819324 -107810796 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 4 949 871 261 29 124 chr4 47819324 47819406 -107810714 + B4A SINE B4 217 292 0 4 949 195 366 89 0 chr4 47819579 47819680 -107810440 + L2b LINE L2 3231 3340 -35 4 949 285 312 149 18 chr4 47820023 47820245 -107809875 - MIRc SINE MIR -14 254 4 4 949 333 0 0 0 chr4 47820307 47820344 -107809776 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 949 398 269 0 0 chr4 47821730 47821823 -107808297 + B4A SINE B4 2 94 -198 4 949 1737 304 88 11 chr4 47821839 47822498 -107807622 + Lx8 LINE L1 6173 6882 -591 4 949 1967 138 23 7 chr4 47823288 47823594 -107806526 - RLTR10E LTR ERVK 0 311 1 4 949 216 241 0 0 chr4 47823707 47823765 -107806355 + CT-rich Low_complexity Low_complexity 3 60 0 4 949 189 74 0 0 chr4 47824366 47824393 -107805727 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 4 949 334 55 76 22 chr4 47824394 47824486 -107805634 + T-rich Low_complexity Low_complexity 2 98 0 4 949 353 298 149 57 chr4 47825366 47825754 -107804366 + MLT1C LTR MaLR 44 467 0 4 949 684 200 62 28 chr4 47825944 47826088 -107804032 + B1_Mur1 SINE Alu 1 149 0 4 949 1161 74 11 17 chr4 47826102 47826281 -107803839 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 949 624 27 0 0 chr4 47826281 47826355 -107803765 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 4 949 192 200 0 0 chr4 47827464 47827509 -107802611 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 949 546 300 150 4 chr4 47827510 47827700 -107802420 - B4A SINE B4 -1 291 67 4 949 504 0 0 0 chr4 47827700 47827756 -107802364 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 949 279 0 0 0 chr4 47827756 47827786 -107802334 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 949 546 300 150 4 chr4 47827786 47827848 -107802272 - B4A SINE B4 -226 66 3 4 949 396 0 0 0 chr4 47831619 47831663 -107798457 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 949 278 276 31 99 chr4 47831736 47831897 -107798223 + L3 LINE CR1 4329 4478 -11 4 949 289 167 32 32 chr4 47832151 47832213 -107797907 + L4 LINE RTE 1768 1829 -200 4 949 426 39 0 0 chr4 47832784 47832836 -107797284 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 949 549 328 85 26 chr4 47833221 47833528 -107796592 + MER44A DNA MER2_type 8 332 -7 4 949 203 324 37 19 chr4 47833561 47833668 -107796452 - L2a LINE L2 -262 3164 3056 4 949 355 278 90 8 chr4 47833958 47834092 -107796028 - B1F1 SINE Alu 0 149 5 4 949 730 237 30 45 chr4 47834975 47835174 -107794946 + ID_B1 SINE B4 25 220 -4 4 949 792 122 23 0 chr4 47835195 47835367 -107794753 + (CAGAGA)n Simple_repeat Simple_repeat 4 179 0 4 949 279 317 57 120 chr4 47835662 47835820 -107794300 + B1F1 SINE Alu 1 148 -1 5 949 471 297 87 11 chr4 47838049 47838233 -107791887 + MLT1D LTR MaLR 308 505 0 5 949 702 281 31 133 chr4 47838477 47838703 -107791417 + ID_B1 SINE B4 16 218 -74 5 949 284 194 0 0 chr4 47838930 47838992 -107791128 + L1ME4a LINE L1 6063 6124 0 5 949 511 314 4 13 chr4 47839049 47839278 -107790842 + L1ME4a LINE L1 5618 5844 -280 5 949 271 209 48 0 chr4 47839797 47839902 -107790218 + CT-rich Low_complexity Low_complexity 1 110 0 5 949 948 66 0 0 chr4 47839947 47840084 -107790036 + (TC)n Simple_repeat Simple_repeat 1 137 0 5 949 306 0 0 0 chr4 47840084 47840117 -107790003 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 949 272 309 12 0 chr4 47840271 47840352 -107789768 + L2b LINE L2 3001 3082 -293 5 949 441 0 0 0 chr4 47841058 47841107 -107789013 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 5 950 234 0 0 0 chr4 47841299 47841325 -107788795 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 950 1165 69 0 0 chr4 47841325 47841469 -107788651 - B1_Mus2 SINE Alu -2 145 2 5 950 297 0 0 0 chr4 47841545 47841578 -107788542 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 950 22 0 0 0 chr4 47841703 47841725 -107788395 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 294 51 7 0 chr4 47841890 47841936 -107788184 - L1_Mm LINE L1 -4138 1745 1697 5 950 24 0 0 0 chr4 47841945 47841969 -107788151 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 263 368 32 16 chr4 47842235 47842420 -107787700 + B4A SINE B4 91 278 -14 5 950 607 140 158 268 chr4 47842865 47843119 -107787001 - URR1A DNA MER1_type 0 226 1 5 950 283 193 169 0 chr4 47843685 47843768 -107786352 + MLT1A0 LTR MaLR 1 97 -268 5 950 306 297 34 8 chr4 47843849 47843968 -107786152 + MLT1A0 LTR MaLR 244 365 0 5 950 329 232 0 10 chr4 47844594 47844690 -107785430 + GA-rich Low_complexity Low_complexity 3 97 0 5 950 795 245 30 40 chr4 47844976 47845176 -107784944 + B3 SINE B2 2 199 -17 5 950 1171 262 54 30 chr4 47845352 47845721 -107784399 + MTEb LTR MaLR 1 378 -1 5 950 204 211 53 0 chr4 47846332 47846389 -107783731 + (TATG)n Simple_repeat Simple_repeat 1 60 0 5 950 369 207 0 0 chr4 47846391 47846473 -107783647 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 950 834 246 72 29 chr4 47846473 47846749 -107783371 - B4A SINE B4 0 292 5 5 950 873 241 84 28 chr4 47847350 47847636 -107782484 + L1MB7 LINE L1 5777 6078 -106 5 950 321 283 16 48 chr4 47848325 47848451 -107781669 - MIR SINE MIR -89 173 52 5 950 282 292 0 14 chr4 47848859 47848932 -107781188 + C-rich Low_complexity Low_complexity 3 74 0 5 950 869 185 72 39 chr4 47849010 47849218 -107780902 + B3 SINE B2 2 216 0 5 950 215 279 35 21 chr4 47849308 47849399 -107780721 - MIRm SINE MIR -92 116 31 5 950 368 234 17 86 chr4 47849890 47850007 -107780113 + ID_B1 SINE B4 78 186 -38 5 950 221 315 45 0 chr4 47849927 47850016 -107780104 + B1_Mur2 SINE Alu 25 117 -32 5 950 495 0 0 0 chr4 47850498 47850553 -107779567 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 950 1402 256 106 29 chr4 47850593 47851176 -107778944 - L1MA8 LINE L1 -7 6284 5657 5 950 560 248 7 7 chr4 47851797 47851943 -107778177 + B1F SINE Alu 4 149 0 5 950 578 241 8 0 chr4 47852480 47852613 -107777507 + B3A SINE B2 9 142 -56 5 950 1243 50 0 0 chr4 47853176 47853337 -107776783 + MT2B2 LTR ERVL 4 164 -420 5 950 2995 71 62 4 chr4 47853337 47853788 -107776332 + RLTR44C LTR ERVK 1 477 -25 5 950 2579 140 35 28 chr4 47853798 47854335 -107775785 + ORR1A3-int LTR MaLR 722 1262 -701 5 950 387 172 0 11 chr4 47854323 47854411 -107775709 - URR1B DNA MER1_type -56 169 83 5 950 244 114 0 0 chr4 47854425 47854460 -107775660 - URR1A DNA MER1_type -190 36 2 5 950 339 319 82 70 chr4 47855403 47855648 -107774472 - B4 SINE B4 -18 274 27 5 950 1053 46 0 0 chr4 47855648 47855779 -107774341 + (CCA)n Simple_repeat Simple_repeat 3 133 0 5 950 339 319 82 70 chr4 47855779 47855803 -107774317 - B4 SINE B4 -266 26 2 5 950 207 0 0 0 chr4 47857191 47857214 -107772906 + (A)n Simple_repeat Simple_repeat 1 23 0 5 950 245 324 61 40 chr4 47858832 47858980 -107771140 + L3 LINE CR1 4049 4199 -290 5 950 838 288 72 63 chr4 47861554 47861969 -107768151 + MTD LTR MaLR 1 419 0 5 950 232 318 59 26 chr4 47862516 47862668 -107767452 + MIR SINE MIR 21 177 -85 5 950 914 224 129 25 chr4 47863338 47863677 -107766443 - MTE2b LTR MaLR -1 378 6 5 950 221 244 23 23 chr4 47865871 47865959 -107764161 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 5 950 527 205 70 8 chr4 47866043 47866171 -107763949 + Lx5 LINE L1 6914 7049 -1 5 950 30 0 0 0 chr4 47866171 47866201 -107763919 + AT_rich Low_complexity Low_complexity 1 30 0 5 950 973 294 82 26 chr4 47866201 47866592 -107763528 - Lx8 LINE L1 -2 7471 7059 5 950 2149 169 58 5 chr4 47867768 47868167 -107761953 - Lx5 LINE L1 -1 7049 6630 5 950 1845 96 0 81 chr4 47868167 47868462 -107761658 + Lx4B LINE L1 6398 6668 -390 5 950 451 304 76 0 chr4 47869139 47869323 -107760797 - MER2 DNA MER2_type -117 228 31 5 950 2533 132 65 8 chr4 47869451 47869848 -107760272 + MTC LTR MaLR 2 421 0 5 950 372 94 0 0 chr4 47870356 47870409 -107759711 + (TCC)n Simple_repeat Simple_repeat 3 55 0 5 950 26 30 0 0 chr4 47870599 47870632 -107759488 + AT_rich Low_complexity Low_complexity 1 33 0 5 950 4636 55 0 0 chr4 47870668 47871231 -107758889 - L1Md_F2 LINE L1 -12 6570 6008 5 950 288 312 62 39 chr4 47871252 47871382 -107758738 - ID_B1 SINE B4 -2 222 90 5 950 262 254 56 0 chr4 47871989 47872060 -107758060 - MER5A1 DNA MER1_type -90 76 2 5 950 567 250 14 35 chr4 47872179 47872324 -107757796 + B1F2 SINE Alu 1 142 -7 5 950 2935 166 96 14 chr4 47872325 47872887 -107757233 + Lx2B LINE L1 6392 6999 -1 5 950 713 240 38 22 chr4 47873130 47873313 -107756807 + B4A SINE B4 69 254 -38 5 950 750 149 20 0 chr4 47873402 47873550 -107756570 + GA-rich Low_complexity Low_complexity 2 152 0 5 950 369 62 60 24 chr4 47873544 47873627 -107756493 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 5 950 654 138 0 0 chr4 47874419 47874528 -107755592 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 950 186 43 0 0 chr4 47874531 47874554 -107755566 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 950 561 125 0 0 chr4 47878310 47878398 -107751722 + (TCC)n Simple_repeat Simple_repeat 2 89 0 5 950 451 273 118 16 chr4 47880652 47880862 -107749258 - MLT1D LTR MaLR -407 220 7 5 950 511 293 68 24 chr4 47881080 47881328 -107748792 + Tigger13a DNA MER2_type 137 395 -376 5 950 473 359 62 5 chr4 47881328 47881538 -107748582 + B4A SINE B4 62 283 -9 5 950 288 0 0 0 chr4 47881572 47881604 -107748516 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 950 594 28 0 0 chr4 47881604 47881675 -107748445 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 950 1069 245 5 5 chr4 47881809 47882030 -107748090 + ID_B1 SINE B4 3 223 -1 5 950 479 260 120 34 chr4 47882393 47882660 -107747460 + MER33 DNA MER1_type 3 292 -32 5 950 22 0 0 0 chr4 47882756 47882778 -107747342 + GC_rich Low_complexity Low_complexity 1 22 0 5 950 315 371 44 26 chr4 47884955 47885182 -107744938 + MIRc SINE MIR 9 239 -29 5 950 525 278 8 0 chr4 47885218 47885344 -107744776 + ID_B1 SINE B4 88 214 -10 5 950 346 190 76 0 chr4 47885465 47885544 -107744576 - B1_Mur2 SINE Alu -5 144 60 5 950 347 296 133 23 chr4 47885707 47885880 -107744240 - MLT1A1 LTR MaLR -214 194 3 5 950 723 95 0 0 chr4 47885925 47886030 -107744090 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 5 950 676 317 71 47 chr4 47886062 47886641 -107743479 + L1MB1 LINE L1 4157 4749 -1391 5 950 1403 273 88 32 chr4 47886712 47887401 -107742719 + L1MB1 LINE L1 4874 5604 -564 5 950 216 0 0 0 chr4 47887401 47887425 -107742695 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 950 1170 255 163 57 chr4 47887425 47887782 -107742338 + L1MB1 LINE L1 5605 6005 -163 5 950 186 71 0 0 chr4 47887892 47887920 -107742200 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 950 683 264 21 47 chr4 47889167 47889358 -107740762 - B3A SINE B2 -10 188 3 5 950 21 0 0 0 chr4 47889405 47889426 -107740694 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 769 79 298 0 chr4 47889515 47889629 -107740491 + B1_Mus1 SINE Alu 1 148 0 5 950 23 0 0 0 chr4 47889677 47889700 -107740420 + AT_rich Low_complexity Low_complexity 1 23 0 5 950 22 0 0 0 chr4 47889718 47889740 -107740380 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 332 307 104 40 chr4 47890211 47890462 -107739658 + L1M6 LINE L1 497 763 -5733 5 950 30 59 0 0 chr4 47890576 47890627 -107739493 + AT_rich Low_complexity Low_complexity 1 51 0 5 950 545 144 76 9 chr4 47890810 47890915 -107739205 + ID_B1 SINE B4 113 224 0 5 950 1064 221 36 0 chr4 47891421 47891616 -107738504 - B3 SINE B2 -14 202 1 5 950 25 65 0 0 chr4 47891714 47891760 -107738360 + AT_rich Low_complexity Low_complexity 1 46 0 5 950 350 211 53 0 chr4 47892157 47892233 -107737887 + RMER10B LTR ERVL 319 398 0 5 950 303 281 36 12 chr4 47892279 47892445 -107737675 + (CATATA)n Simple_repeat Simple_repeat 2 171 0 5 950 744 162 34 34 chr4 47892748 47892895 -107737225 - URR1A DNA MER1_type 0 226 80 5 950 21 0 0 0 chr4 47895797 47895818 -107734302 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 3066 213 71 21 chr4 47896206 47896867 -107733253 + Lx6 LINE L1 6624 7317 -143 5 950 1651 214 103 11 chr4 47896874 47897360 -107732760 - RMER4B LTR ERVK -6 579 16 5 950 617 199 13 26 chr4 47897368 47897523 -107732597 + Lx6 LINE L1 7308 7460 0 5 950 884 129 7 0 chr4 47897533 47897680 -107732440 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 6 950 289 330 50 81 chr4 47899014 47899324 -107730796 - ORR1D2 LTR MaLR -7 363 77 6 950 290 304 10 49 chr4 47899356 47899499 -107730621 - MLT1A LTR MaLR -278 130 2 6 950 584 156 9 0 chr4 47899671 47899780 -107730340 + CT-rich Low_complexity Low_complexity 1 110 0 6 950 1759 262 109 40 chr4 47900066 47900746 -107729374 - L1MA5 LINE L1 -30 6270 5544 6 950 296 257 191 32 chr4 47901207 47901396 -107728724 - L2 LINE L2 -494 2925 2707 6 950 761 256 24 6 chr4 47901400 47901569 -107728551 + B3A SINE B2 1 172 -26 6 950 450 0 0 0 chr4 47901739 47901789 -107728331 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 950 1084 177 137 18 chr4 47902026 47902245 -107727875 + MTD LTR MaLR 167 411 -8 6 950 268 370 6 31 chr4 47902757 47902916 -107727204 - L2a LINE L2 -3 3423 3269 6 950 185 400 71 15 chr4 47903189 47903387 -107726733 - L2a LINE L2 -654 2765 2557 6 950 282 116 0 0 chr4 47903633 47903676 -107726444 + (T)n Simple_repeat Simple_repeat 1 43 0 6 950 554 323 78 0 chr4 47903753 47903945 -107726175 + B4A SINE B4 1 207 -85 6 950 213 237 17 0 chr4 47904260 47904319 -107725801 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 950 501 17 0 0 chr4 47904690 47904748 -107725372 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 950 2063 94 9 70 chr4 47904791 47905122 -107724998 - ORR1A4 LTR MaLR 0 329 19 6 950 192 111 0 0 chr4 47906110 47906146 -107723974 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 950 333 0 0 0 chr4 47906147 47906184 -107723936 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 950 713 70 0 65 chr4 47906184 47906291 -107723829 - B1_Mus1 SINE Alu -9 139 40 6 950 292 271 0 0 chr4 47906670 47906740 -107723380 + B3A SINE B2 3 72 -126 6 950 532 303 54 95 chr4 47906743 47906911 -107723209 + ORR1D2 LTR MaLR 48 208 -166 6 950 270 258 58 17 chr4 47906882 47906970 -107723150 + ORR1D2 LTR MaLR 281 397 -22 6 950 334 250 30 53 chr4 47906970 47907101 -107723019 + B3A SINE B2 69 196 -2 6 950 1202 48 7 7 chr4 47907101 47907248 -107722872 + B1_Mus1 SINE Alu 1 147 -1 6 950 510 17 0 0 chr4 47907248 47907307 -107722813 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 950 653 11 43 0 chr4 47908298 47908392 -107721728 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 6 950 312 111 0 0 chr4 47908453 47908507 -107721613 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 950 315 349 0 0 chr4 47909591 47909674 -107720446 - MIRb SINE MIR -184 84 2 6 950 1463 256 106 34 chr4 47910351 47910909 -107719211 - Lx9 LINE L1 -43 7601 7004 6 950 914 106 0 7 chr4 47910910 47911052 -107719068 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 6 950 331 36 73 0 chr4 47911052 47911107 -107719013 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 6 950 1095 69 0 0 chr4 47911107 47911252 -107718868 + (GAAA)n Simple_repeat Simple_repeat 1 145 0 6 950 359 271 73 38 chr4 47911793 47911933 -107718187 - MIR SINE MIR -100 168 15 6 950 729 0 0 0 chr4 47912366 47912447 -107717673 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 950 356 169 157 0 chr4 47913798 47913881 -107716239 + B3A SINE B2 1 96 -102 6 950 2237 247 68 40 chr4 47914001 47914611 -107715509 - Lx5 LINE L1 0 7050 6455 6 950 378 0 0 0 chr4 47914611 47914653 -107715467 + (TTA)n Simple_repeat Simple_repeat 2 43 0 6 950 1217 182 41 2 chr4 47914653 47914906 -107715214 - Lx5 LINE L1 -705 6755 6263 6 950 341 302 20 86 chr4 47915218 47915370 -107714750 + Arthur1A DNA Tip100 1 142 -35 6 950 499 305 138 44 chr4 47915767 47916167 -107713953 - RLTR26 LTR ERVK -64 563 97 6 950 351 0 0 0 chr4 47916712 47916751 -107713369 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 950 22 0 0 0 chr4 47917007 47917029 -107713091 + AT_rich Low_complexity Low_complexity 1 22 0 6 950 259 350 60 70 chr4 47917466 47917764 -107712356 + Kanga11a DNA Tc2 2 296 -674 6 950 1116 100 0 0 chr4 47917910 47918359 -107711761 + (CA)n Simple_repeat Simple_repeat 1 449 0 6 950 837 291 42 25 chr4 47918577 47918862 -107711258 + RMER15-int LTR ERVL 457 746 -4253 6 950 621 0 0 0 chr4 47918863 47918932 -107711188 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 950 434 258 72 42 chr4 47919075 47919241 -107710879 + RMER15-int LTR ERVL 928 1098 -3901 6 950 296 156 0 0 chr4 47919245 47919290 -107710830 + PB1D9 SINE Alu 1 45 -75 6 950 1185 319 97 9 chr4 47919294 47919749 -107710371 + RMER15-int LTR ERVL 1201 1695 -3304 6 950 684 322 134 11 chr4 47919902 47920269 -107709851 + RMER15-int LTR ERVL 1975 2386 -2613 6 950 1910 298 94 55 chr4 47920341 47921140 -107708980 + RMER15-int LTR ERVL 4167 4996 -3 6 950 408 317 119 10 chr4 47921311 47921512 -107708608 + RMER15 LTR ERVL 353 575 0 6 950 652 219 94 25 chr4 47921931 47922132 -107707988 - B3 SINE B2 0 216 2 6 950 338 291 71 94 chr4 47922133 47922159 -107707961 + L1M5 LINE L1 4273 4293 -1853 6 950 2375 185 26 21 chr4 47922159 47922578 -107707542 + MTC LTR MaLR 1 421 0 6 950 338 291 71 94 chr4 47922578 47923032 -107707088 + L1M5 LINE L1 4294 4742 -1404 6 950 419 239 34 0 chr4 47923042 47923130 -107706990 + B1F1 SINE Alu 1 91 -58 6 950 722 69 10 0 chr4 47923159 47923260 -107706860 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 6 950 372 370 93 25 chr4 47923287 47923567 -107706553 + L1M5 LINE L1 4789 5087 -1059 6 950 1008 295 18 0 chr4 47923578 47923856 -107706264 + B4A SINE B4 10 292 0 6 950 584 291 18 41 chr4 47924069 47924330 -107705790 + L1M5 LINE L1 5336 5603 -559 6 950 573 226 0 9 chr4 47924696 47924803 -107705317 + B1_Mur1 SINE Alu 35 140 -9 6 950 22 35 0 0 chr4 47924988 47925017 -107705103 + AT_rich Low_complexity Low_complexity 1 29 0 6 950 637 242 101 13 chr4 47925229 47925377 -107704743 + B3 SINE B2 3 166 -50 6 950 471 60 0 0 chr4 47925377 47925444 -107704676 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 950 185 61 0 83 chr4 47925580 47925616 -107704504 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 6 950 1069 300 64 11 chr4 47925723 47926192 -107703928 - L1M6 LINE L1 -4682 1814 1321 6 950 376 290 68 7 chr4 47926768 47926914 -107703206 - L1M6 LINE L1 -6338 158 4 6 950 390 185 0 0 chr4 47927970 47928051 -107702069 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 950 273 351 59 41 chr4 47928113 47928333 -107701787 + RMER15 LTR ERVL 347 570 -5 6 950 334 277 104 30 chr4 47928609 47928768 -107701352 - MIR3 SINE MIR -39 169 1 6 950 470 242 114 57 chr4 47929594 47929734 -107700386 - RSINE1 SINE B4 0 165 18 6 950 504 0 0 0 chr4 47929766 47929822 -107700298 + (TTA)n Simple_repeat Simple_repeat 2 57 0 6 950 465 170 75 117 chr4 47929829 47929949 -107700171 - PB1D10 SINE Alu -2 115 1 6 950 713 234 42 78 chr4 47930435 47930741 -107699379 + Lx9 LINE L1 7329 7623 -21 6 950 27 0 0 0 chr4 47930741 47930768 -107699352 + AT_rich Low_complexity Low_complexity 1 27 0 6 950 245 233 151 75 chr4 47930771 47930864 -107699256 + RSINE1 SINE B4 26 125 -40 6 950 219 69 0 0 chr4 47931190 47931219 -107698901 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 950 390 42 0 0 chr4 47931375 47931423 -107698697 + (T)n Simple_repeat Simple_repeat 1 48 0 6 950 1042 78 41 41 chr4 47931423 47931570 -107698550 - B1_Mus2 SINE Alu 0 147 1 6 950 541 283 122 7 chr4 47931634 47931912 -107698208 - Tigger7 DNA MER2_type -10 2481 2172 6 950 428 314 51 6 chr4 47931964 47932121 -107697999 - Tigger7 DNA MER2_type -2220 271 108 6 950 191 289 51 26 chr4 47932814 47932892 -107697228 - MIRb SINE MIR -145 123 44 6 950 237 133 16 48 chr4 47932919 47932982 -107697138 + CT-rich Low_complexity Low_complexity 1 61 0 6 950 1043 240 137 16 chr4 47933310 47933623 -107696497 + Lx6 LINE L1 7103 7453 -7 6 950 1220 231 0 0 chr4 47934167 47934392 -107695728 + RMER1B Other Other 45 269 -797 6 950 333 153 88 39 chr4 47934557 47934659 -107695461 + RMER1B Other Other 309 415 -651 6 950 491 189 37 19 chr4 47934629 47934737 -107695383 + RMER1A Other Other 1 110 -920 6 950 383 236 160 39 chr4 47935426 47935512 -107694608 - MER45B DNA Tip100 -39 1001 906 6 950 486 0 0 0 chr4 47935512 47935566 -107694554 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 950 383 236 160 39 chr4 47935566 47935660 -107694460 - MER45B DNA Tip100 -135 905 799 6 950 445 279 55 25 chr4 47935716 47935918 -107694202 - L1MB7 LINE L1 -82 6102 5895 6 950 290 218 11 84 chr4 47936071 47936166 -107693954 + RSINE1 SINE B4 78 165 0 6 950 236 306 130 44 chr4 47936934 47937272 -107692848 + L1ME3B LINE L1 3850 4216 -1930 6 950 988 166 188 0 chr4 47937401 47937582 -107692538 - B3 SINE B2 0 216 2 6 950 270 305 76 0 chr4 47937957 47938075 -107692045 + L1ME3B LINE L1 4786 4912 -1234 6 950 283 282 4 14 chr4 47938341 47938431 -107691689 + MLT1A1 LTR MaLR 318 467 0 6 950 210 171 0 0 chr4 47938431 47938466 -107691654 + A-rich Low_complexity Low_complexity 1 35 0 6 950 316 211 76 9 chr4 47938727 47938832 -107691288 + Lx7 LINE L1 7585 7696 0 6 950 462 312 114 46 chr4 47939014 47939451 -107690669 + L1ME3B LINE L1 5457 5923 -317 6 950 1562 169 161 129 chr4 47939535 47939643 -107690477 + MT2A LTR ERVL 1 89 -444 6 950 522 0 0 0 chr4 47939643 47939701 -107690419 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 6 950 1562 169 161 129 chr4 47939701 47940040 -107690080 + MT2A LTR ERVL 90 462 -71 6 950 10232 157 47 29 chr4 47940115 47940816 -107689304 + MERVL_2A-int LTR ERVL 74 814 -4947 6 950 1423 87 11 26 chr4 47940816 47941006 -107689114 - B2_Mm2 SINE B2 -7 188 2 6 950 10232 157 47 29 chr4 47941006 47942185 -107687935 + MERVL_2A-int LTR ERVL 815 1988 -3773 6 950 2161 127 38 6 chr4 47942189 47942530 -107687590 + ORR1B1 LTR MaLR 43 394 0 6 950 9322 157 41 7 chr4 47942532 47944074 -107686046 + MERVL_2A-int LTR ERVL 1981 3575 -2186 6 950 462 167 0 0 chr4 47944076 47944160 -107685960 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 950 1942 178 3 0 chr4 47944166 47944469 -107685651 + MERVL_2A-int LTR ERVL 3568 3871 -1890 6 950 1058 173 92 0 chr4 47944467 47944652 -107685468 + MERVL_2A-int LTR ERVL 4306 4507 -1254 6 950 821 199 233 149 chr4 47944652 47945061 -107685059 + MT2B LTR ERVL 6 526 -75 6 950 375 41 0 0 chr4 47945061 47945110 -107685010 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 950 280 217 175 35 chr4 47945110 47945163 -107684957 + MT2B LTR ERVL 410 474 -1 6 950 413 269 48 0 chr4 47945499 47945603 -107684517 + PB1D10 SINE Alu 1 109 -8 6 950 332 183 17 0 chr4 47947523 47947583 -107682537 + RSINE1 SINE B4 3 63 -102 6 950 258 32 0 0 chr4 47947605 47947636 -107682484 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 950 432 0 0 0 chr4 47947638 47947686 -107682434 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 950 328 344 370 15 chr4 47948494 47948767 -107681353 - MLT1J-int LTR MaLR -812 575 206 6 950 743 251 5 55 chr4 47948847 47949049 -107681071 + B3A SINE B2 1 192 -6 6 950 410 300 110 89 chr4 47949167 47949783 -107680337 + L1ME2z LINE L1 4806 5432 -732 6 950 467 33 16 0 chr4 47949815 47949876 -107680244 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 950 435 202 0 0 chr4 47949876 47949980 -107680140 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 950 246 279 18 80 chr4 47949992 47950105 -107680015 + L1ME2z LINE L1 5478 5583 -596 6 950 321 155 0 0 chr4 47950113 47950171 -107679949 + CT-rich Low_complexity Low_complexity 3 60 0 6 950 497 219 42 42 chr4 47950195 47950338 -107679782 - B1F2 SINE Alu -5 144 2 7 950 727 230 101 49 chr4 47950479 47950767 -107679353 + L1ME2z LINE L1 5668 5970 -474 6 950 2279 193 60 12 chr4 47951229 47951732 -107678388 + RLTR11A2 LTR ERVK 1 527 0 7 950 270 319 48 24 chr4 47952982 47953149 -107676971 + L2b LINE L2 2970 3140 -235 7 950 369 0 0 0 chr4 47954328 47954369 -107675751 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 950 792 82 0 0 chr4 47954369 47954490 -107675630 + (TG)n Simple_repeat Simple_repeat 1 122 0 7 950 747 256 164 46 chr4 47954490 47954862 -107675258 + MLT2B1 LTR ERVL 87 502 -18 7 950 513 32 0 0 chr4 47955828 47955891 -107674229 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 950 566 323 43 17 chr4 47955918 47956148 -107673972 - B4A SINE B4 -28 264 29 7 950 460 325 55 28 chr4 47956185 47956403 -107673717 - MIR SINE MIR -21 241 18 7 950 261 0 0 0 chr4 47956736 47956765 -107673355 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 950 297 0 0 0 chr4 47956852 47956885 -107673235 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 7 950 586 63 0 5 chr4 47956887 47956980 -107673140 - B1_Mus2 SINE Alu 0 149 60 7 950 661 317 119 21 chr4 47957278 47957613 -107672507 + L2a LINE L2 2355 2722 -697 7 950 1149 192 39 3 chr4 47957695 47958022 -107672098 + RMER20A LTR ERVK 22 455 -61 7 950 707 171 115 42 chr4 47958255 47958420 -107671700 + B3 SINE B2 34 210 -6 7 950 211 385 56 10 chr4 47958488 47958685 -107671435 + L2a LINE L2 2937 3142 -284 7 950 187 388 58 22 chr4 47958734 47958871 -107671249 + L2a LINE L2 3275 3416 -10 7 950 396 300 149 32 chr4 47960418 47960766 -107669354 + MamRep4096 DNA hAT? 13 401 -25 7 950 252 309 35 26 chr4 47962653 47962766 -107667354 - L2c LINE L2 -183 3204 3091 7 950 583 295 185 15 chr4 47962993 47963027 -107667093 + L1MB3 LINE L1 5760 5793 -390 7 950 333 0 0 0 chr4 47963027 47963064 -107667056 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 950 583 297 169 15 chr4 47963064 47963381 -107666739 + L1MB3 LINE L1 5794 6165 -9 7 950 357 217 0 0 chr4 47964378 47964507 -107665613 + (CA)n Simple_repeat Simple_repeat 2 130 0 7 950 446 243 0 6 chr4 47964539 47964717 -107665403 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 950 284 281 12 35 chr4 47964818 47964903 -107665217 + B3A SINE B2 43 127 -71 7 950 294 125 0 0 chr4 47965080 47965128 -107664992 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 7 950 757 312 114 20 chr4 47965809 47966205 -107663915 + L2a LINE L2 2961 3393 -33 7 950 186 103 0 0 chr4 47966219 47966248 -107663872 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 7 950 393 230 24 0 chr4 47966881 47967007 -107663113 + CT-rich Low_complexity Low_complexity 1 129 0 7 950 741 211 0 45 chr4 47967007 47967161 -107662959 - B1_Mur1 SINE Alu -1 148 2 7 950 565 375 98 54 chr4 47967472 47968106 -107662014 - L4 LINE RTE -648 1381 720 7 950 27 29 0 0 chr4 47968332 47968366 -107661754 + AT_rich Low_complexity Low_complexity 1 34 0 7 950 6447 156 97 21 chr4 47968981 47970371 -107659749 + Lx4B LINE L1 5516 7054 -4 7 118 13559 73 78 8 chr4 47970371 47972939 -107657181 - L1VL2 LINE L1 -696 2919 164 7 951 266 250 43 14 chr4 47973309 47973378 -107656742 - Lx9 LINE L1 -1017 6627 6557 7 951 485 317 27 5 chr4 47974129 47974316 -107655804 - L4 LINE RTE -1791 238 48 7 951 330 227 26 13 chr4 47974983 47975059 -107655061 + ID4_ SINE ID 1 77 -6 7 951 1494 234 55 23 chr4 47975085 47975522 -107654598 - ALINE LINE RTE -103 514 64 7 951 940 89 89 0 chr4 47975618 47975753 -107654367 - B1_Mus1 SINE Alu 0 148 2 7 951 1009 247 53 25 chr4 47976517 47976799 -107653321 + B4A SINE B4 1 290 -2 7 951 448 314 30 89 chr4 47976842 47977045 -107653075 - B3A SINE B2 -6 210 20 7 951 643 297 77 4 chr4 47978266 47978499 -107651621 - B4A SINE B4 -41 251 2 7 951 198 0 0 0 chr4 47978593 47978615 -107651505 + (A)n Simple_repeat Simple_repeat 1 22 0 7 951 1240 75 23 11 chr4 47978617 47978793 -107651327 + B2_Mm1a SINE B2 2 179 -14 7 951 3316 116 117 38 chr4 47978943 47979498 -107650622 + MT2B LTR ERVL 3 601 0 7 951 216 325 12 22 chr4 47979730 47979830 -107650290 - MIR SINE MIR -96 172 67 7 951 295 274 71 24 chr4 47980147 47980274 -107649846 + CR1_Mam LINE CR1 494 626 -1578 7 951 681 117 9 0 chr4 47980948 47981059 -107649061 + B1_Mur4 SINE Alu 33 144 -6 7 951 752 125 8 0 chr4 47981059 47981187 -107648933 + (GGAA)n Simple_repeat Simple_repeat 1 129 0 7 951 338 91 0 0 chr4 47981190 47981234 -107648886 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 951 483 360 34 17 chr4 47981292 47981645 -107648475 + L1M2 LINE L1 4882 5240 -903 7 951 1239 76 229 82 chr4 47981645 47981890 -107648230 + ORR1A2 LTR MaLR 1 281 -46 7 951 6714 60 0 0 chr4 47981890 47982748 -107647372 + L1Md_T LINE L1 5755 6582 0 7 951 676 242 126 19 chr4 47982749 47982964 -107647156 + 7SK RNA RNA 1 238 -93 7 951 757 276 32 16 chr4 47982973 47983223 -107646897 + L1M2 LINE L1 5374 5627 -670 7 951 21 36 0 0 chr4 47983556 47983584 -107646536 + AT_rich Low_complexity Low_complexity 1 28 0 7 951 468 268 92 29 chr4 47983622 47983795 -107646325 + MER2 DNA MER2_type 162 345 0 7 951 202 340 29 20 chr4 47985109 47985211 -107644909 - MIR SINE MIR -87 175 73 7 951 270 0 0 0 chr4 47985251 47985281 -107644839 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 951 432 0 0 0 chr4 47985281 47985328 -107644792 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 951 202 354 0 0 chr4 47985343 47985408 -107644712 + (TATG)n Simple_repeat Simple_repeat 1 65 0 7 951 574 248 8 0 chr4 47985460 47985585 -107644535 - B1_Mur1 SINE Alu -21 128 3 7 951 780 269 67 5 chr4 47985605 47985814 -107644306 - B4A SINE B4 -70 222 1 7 951 1375 320 43 48 chr4 47986294 47986879 -107643241 - L1ME2z LINE L1 -2 6442 5851 7 951 306 0 0 0 chr4 47986879 47986913 -107643207 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7 951 189 0 0 0 chr4 47986914 47986935 -107643185 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 7 951 1375 320 43 48 chr4 47986935 47987316 -107642804 - L1ME2z LINE L1 -594 5850 5479 7 951 7897 15 1 2 chr4 47987328 47988221 -107641899 - L1Md_A LINE L1 0 6582 5723 7 951 432 86 0 0 chr4 47988239 47988309 -107641811 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 951 489 259 28 7 chr4 47988310 47988454 -107641666 - B3A SINE B2 -51 147 1 7 951 1086 177 49 5 chr4 47989924 47990128 -107639992 + B3 SINE B2 4 216 0 7 951 262 318 11 11 chr4 47991093 47991182 -107638938 - MTEb LTR MaLR -13 366 278 7 951 396 0 0 0 chr4 47992390 47992434 -107637686 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 951 576 29 0 0 chr4 47992434 47992503 -107637617 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 951 1193 272 62 28 chr4 47992866 47993266 -107636854 + Lx8 LINE L1 7054 7467 -6 7 951 875 131 24 6 chr4 47993438 47993607 -107636513 + Lx4A LINE L1 6886 7057 -1 7 951 405 153 0 0 chr4 47993900 47993972 -107636148 + CT-rich Low_complexity Low_complexity 2 73 0 7 951 690 179 0 0 chr4 47994030 47994147 -107635973 - B3 SINE B2 -89 127 11 7 951 248 154 19 0 chr4 47994927 47994979 -107635141 + (CGGGG)n Simple_repeat Simple_repeat 3 55 0 7 951 3120 171 83 17 chr4 47995281 47995880 -107634240 + RMER1C Other Other 704 1342 0 7 951 198 0 0 0 chr4 47997365 47997387 -107632733 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 951 207 0 0 0 chr4 47998003 47998026 -107632094 + (GGTTG)n Simple_repeat Simple_repeat 4 26 0 7 951 277 295 10 10 chr4 47998026 47998117 -107632003 - PB1 SINE Alu -8 119 29 7 951 474 329 0 50 chr4 47998788 47998967 -107631153 + B3A SINE B2 29 198 0 7 951 195 42 0 0 chr4 47999289 47999313 -107630807 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 951 271 138 33 49 chr4 47999337 47999398 -107630722 + RMER1C Other Other 940 999 -343 7 951 227 321 12 0 chr4 47999403 47999484 -107630636 + C-rich Low_complexity Low_complexity 2 83 0 7 951 1632 138 39 78 chr4 47999484 47999868 -107630252 + RMER1C Other Other 973 1341 -1 7 951 332 286 19 19 chr4 48000576 48000683 -107629437 + PB1D10 SINE Alu 1 107 -10 1 951 525 110 0 0 chr4 48000683 48000774 -107629346 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 951 896 240 31 27 chr4 48001973 48002196 -107627924 + ID_B1 SINE B4 1 224 0 3 951 405 257 13 94 chr4 48002695 48002854 -107627266 - RMER1C Other Other -596 746 601 4 951 231 274 20 75 chr4 48002906 48002930 -107627190 + RMER1B Other Other 928 951 -115 5 951 785 65 0 9 chr4 48002930 48003039 -107627081 + (TTC)n Simple_repeat Simple_repeat 1 108 0 6 951 559 180 33 25 chr4 48003039 48003160 -107626960 + RMER1C Other Other 1221 1341 -1 5 951 225 294 0 0 chr4 48003883 48003934 -107626186 + tRNA-Ala-GCY_ tRNA tRNA 17 67 -8 7 951 22 0 0 0 chr4 48004125 48004147 -107625973 + AT_rich Low_complexity Low_complexity 1 22 0 8 951 396 127 0 0 chr4 48004468 48004531 -107625589 + MTC LTR MaLR 18 80 -341 9 951 4614 68 14 0 chr4 48004532 48005120 -107625000 + L1_Mus3 LINE L1 6043 6638 0 1 951 651 146 23 0 chr4 48005124 48005254 -107624866 + GA-rich Low_complexity Low_complexity 2 134 0 1 951 294 179 0 0 chr4 48005257 48005313 -107624807 + G-rich Low_complexity Low_complexity 1 56 0 1 951 1202 72 0 6 chr4 48005313 48005480 -107624640 + (GAGAA)n Simple_repeat Simple_repeat 5 170 0 1 951 2054 155 6 28 chr4 48005480 48005839 -107624281 + MTC LTR MaLR 71 421 0 9 951 5534 182 86 29 chr4 48005839 48007029 -107623091 + MTC-int LTR MaLR 1 1258 0 9 951 3278 302 47 24 chr4 48007071 48007980 -107622140 + Lx8 LINE L1 6289 7237 -236 1 951 1056 112 202 0 chr4 48007980 48008168 -107621952 - URR1A DNA MER1_type 0 226 1 1 951 3278 302 47 24 chr4 48008168 48008417 -107621703 + Lx8 LINE L1 7238 7473 0 1 951 216 235 19 19 chr4 48008434 48008486 -107621634 - PB1 SINE Alu -8 119 68 1 951 930 278 116 13 chr4 48008537 48008937 -107621183 - MLT1C LTR MaLR -3 464 16 1 951 465 261 44 44 chr4 48009206 48009342 -107620778 + B1_Mur1 SINE Alu 1 136 -13 1 951 25 0 0 0 chr4 48009731 48009756 -107620364 + AT_rich Low_complexity Low_complexity 1 25 0 1 951 21 36 0 0 chr4 48010112 48010140 -107619980 + AT_rich Low_complexity Low_complexity 1 28 0 2 951 225 94 0 0 chr4 48010260 48010292 -107619828 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 951 504 0 0 0 chr4 48013569 48013625 -107616495 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 951 237 207 11 22 chr4 48014437 48014526 -107615594 + CT-rich Low_complexity Low_complexity 4 91 0 2 951 312 236 8 113 chr4 48014641 48014765 -107615355 + L1MC1 LINE L1 6012 6122 -211 2 951 1082 213 19 0 chr4 48014913 48015120 -107615000 + B3 SINE B2 2 212 -4 2 951 319 286 26 52 chr4 48015278 48015433 -107614687 + L1ME1 LINE L1 5815 5965 -214 2 951 735 261 0 6 chr4 48017335 48017493 -107612627 - RSINE1 SINE B4 -8 157 1 2 951 1015 239 22 4 chr4 48017729 48017960 -107612160 - MLT1D LTR MaLR -19 486 252 2 951 1085 64 7 0 chr4 48018307 48018447 -107611673 + B1_Mus2 SINE Alu 1 141 -6 2 951 505 104 0 0 chr4 48018448 48018515 -107611605 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 951 1002 162 0 0 chr4 48018515 48018694 -107611426 + GA-rich Low_complexity Low_complexity 2 180 0 3 951 254 271 79 32 chr4 48019024 48019150 -107610970 - L1MC4a LINE L1 -16 7866 7735 3 951 261 275 14 0 chr4 48019969 48020038 -107610082 + ID2 SINE ID 2 71 -12 3 951 225 65 0 0 chr4 48020044 48020075 -107610045 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 951 261 352 28 9 chr4 48020513 48020619 -107609501 + PB1D10 SINE Alu 3 110 -7 3 951 1226 262 7 13 chr4 48020649 48020951 -107609169 + Lx9 LINE L1 7173 7472 -172 3 951 3809 207 98 24 chr4 48020932 48021931 -107608189 - RMER1B Other Other -10 1056 163 3 951 315 261 116 35 chr4 48022404 48022621 -107607499 + MTEa LTR MaLR 112 356 -23 3 951 302 134 179 0 chr4 48023326 48023393 -107606727 + L1M5 LINE L1 5638 5716 -446 3 951 546 57 0 0 chr4 48023393 48023463 -107606657 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 951 371 361 70 6 chr4 48023463 48023589 -107606531 - B4A SINE B4 -126 166 30 4 951 5855 67 8 18 chr4 48023589 48024353 -107605767 - L1Md_F2 LINE L1 -5 6577 5822 4 951 371 361 70 6 chr4 48024353 48024382 -107605738 - B4A SINE B4 -263 29 1 4 951 555 244 134 56 chr4 48025374 48025643 -107604477 - B4A SINE B4 -2 290 1 4 951 412 161 86 0 chr4 48026366 48026447 -107603673 - L1MA8 LINE L1 -383 5908 5821 4 951 1150 268 91 34 chr4 48027133 48027608 -107602512 - L1MA7 LINE L1 -6 6285 5784 4 951 638 283 153 14 chr4 48028320 48028822 -107601298 - L1M5 LINE L1 -592 5570 4993 4 951 1461 54 11 21 chr4 48028859 48029048 -107601072 - B2_Mm1t SINE B2 -5 188 2 4 951 884 172 122 25 chr4 48029119 48029316 -107600804 - B3 SINE B2 0 216 1 4 951 276 296 44 56 chr4 48029323 48029561 -107600559 - L1M5 LINE L1 -1825 4321 4087 4 951 661 253 25 75 chr4 48029823 48030024 -107600096 - B3A SINE B2 -7 191 1 4 951 277 229 177 68 chr4 48030378 48030598 -107599522 - L1M5 LINE L1 -2833 3313 3070 4 951 324 0 0 0 chr4 48030969 48031005 -107599115 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 5 951 423 0 0 0 chr4 48032005 48032052 -107598068 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 951 220 349 0 0 chr4 48033245 48033308 -107596812 + C-rich Low_complexity Low_complexity 1 63 0 5 951 262 289 48 0 chr4 48033648 48033731 -107596389 + GA-rich Low_complexity Low_complexity 3 89 0 5 951 631 309 139 7 chr4 48033739 48034049 -107596071 - MLT2B1 LTR ERVL -70 450 100 5 951 290 194 14 0 chr4 48034056 48034128 -107595992 + CT-rich Low_complexity Low_complexity 1 73 0 5 951 385 204 19 19 chr4 48034137 48034242 -107595878 - MLT2B1 LTR ERVL -451 105 1 5 951 396 0 0 0 chr4 48035568 48035612 -107594508 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 951 230 192 19 37 chr4 48036288 48036342 -107593778 + MLT1J1 LTR MaLR 345 397 -47 5 951 688 238 0 53 chr4 48036624 48036775 -107593345 - B1_Mm SINE Alu 0 147 5 5 951 255 125 0 0 chr4 48037134 48037174 -107592946 + (AGGGGG)n Simple_repeat Simple_repeat 1 40 0 5 951 234 317 49 10 chr4 48037200 48037302 -107592818 + HAL1 LINE L1 1375 1480 -1027 6 951 1170 108 21 0 chr4 48037617 48037803 -107592317 - MusHAL1 LINE L1 -731 1981 1792 6 951 3908 65 36 2 chr4 48037814 48038319 -107591801 - L1_Mus1 LINE L1 0 6567 6046 6 951 9178 2 0 0 chr4 48039405 48040590 -107589530 - L1Md_A LINE L1 0 6582 5398 6 951 203 167 0 45 chr4 48041188 48041204 -107588916 + (TAAA)n Simple_repeat Simple_repeat 2 16 0 6 951 692 252 0 0 chr4 48041204 48041351 -107588769 + B1_Mur1 SINE Alu 2 148 -1 6 951 203 167 0 45 chr4 48041351 48041378 -107588742 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 951 363 60 0 0 chr4 48041378 48041428 -107588692 + (CATA)n Simple_repeat Simple_repeat 2 51 0 6 951 717 258 25 6 chr4 48041632 48041792 -107588328 + RSINE1 SINE B4 3 165 0 6 951 23 0 0 0 chr4 48042111 48042134 -107587986 + AT_rich Low_complexity Low_complexity 1 23 0 6 951 519 340 6 24 chr4 48042142 48042308 -107587812 - RSINE1 SINE B4 0 165 3 7 951 369 0 0 0 chr4 48042327 48042368 -107587752 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 951 588 81 0 0 chr4 48042798 48042885 -107587235 + (TCG)n Simple_repeat Simple_repeat 2 88 0 7 951 342 82 20 0 chr4 48042885 48042934 -107587186 + (TTC)n Simple_repeat Simple_repeat 2 51 0 7 951 784 154 6 22 chr4 48042934 48043113 -107587007 + CT-rich Low_complexity Low_complexity 3 178 0 7 951 451 310 135 52 chr4 48044058 48044480 -107585640 - MLT1L LTR MaLR -11 599 143 7 951 496 248 18 82 chr4 48045005 48045176 -107584944 + B3 SINE B2 57 216 0 7 951 465 32 0 0 chr4 48045189 48045252 -107584868 - B1_Mm SINE Alu 0 147 85 7 951 348 24 0 0 chr4 48045727 48045768 -107584352 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 7 951 817 311 65 34 chr4 48047844 48048290 -107581830 + L1MC LINE L1 5324 5783 -2099 7 951 407 257 0 68 chr4 48048632 48048824 -107581296 + G-rich Low_complexity Low_complexity 2 180 0 8 951 350 301 6 48 chr4 48048850 48049296 -107580824 + G-rich Low_complexity Low_complexity 1 427 0 8 951 665 290 0 54 chr4 48049661 48049847 -107580273 + B4A SINE B4 1 176 -116 8 951 22 0 0 0 chr4 48050539 48050561 -107579559 + AT_rich Low_complexity Low_complexity 1 22 0 8 951 330 87 0 0 chr4 48053173 48053219 -107576901 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 8 951 387 0 0 0 chr4 48053571 48053614 -107576506 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 951 342 0 0 0 chr4 48053614 48053651 -107576469 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 951 711 295 46 25 chr4 48053685 48053970 -107576150 - B4A SINE B4 0 292 2 8 951 205 152 0 0 chr4 48056187 48056220 -107573900 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 8 951 22 35 0 0 chr4 48056270 48056299 -107573821 + GC_rich Low_complexity Low_complexity 1 29 0 8 951 301 0 0 64 chr4 48056861 48056908 -107573212 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 8 951 22 0 0 0 chr4 48057009 48057031 -107573089 + GC_rich Low_complexity Low_complexity 1 22 0 9 951 357 131 0 0 chr4 48057848 48057909 -107572211 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 951 258 268 12 0 chr4 48058126 48058208 -107571912 + (CA)n Simple_repeat Simple_repeat 1 83 0 9 951 231 36 0 0 chr4 48058919 48058947 -107571173 + (CGG)n Simple_repeat Simple_repeat 1 28 0 9 951 303 93 0 0 chr4 48064411 48064454 -107565666 + (CCA)n Simple_repeat Simple_repeat 1 43 0 9 951 270 0 0 0 chr4 48065325 48065355 -107564765 + (TGG)n Simple_repeat Simple_repeat 2 31 0 9 951 327 329 34 27 chr4 48065572 48065719 -107564401 - MIRb SINE MIR -94 174 27 9 951 610 312 45 18 chr4 48070997 48071219 -107558901 + MIRb SINE MIR 26 253 -15 9 951 262 328 16 39 chr4 48071302 48071429 -107558691 - MIRc SINE MIR -106 162 39 9 951 965 300 100 24 chr4 48072100 48072609 -107557511 + L3 LINE CR1 3566 4113 -376 9 951 405 0 0 0 chr4 48072941 48072986 -107557134 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 951 792 230 109 29 chr4 48073027 48073237 -107556883 + B4A SINE B4 4 230 -62 1 951 565 179 8 58 chr4 48073328 48073460 -107556660 + ORR1C1 LTR MaLR 13 131 -263 1 951 556 96 24 0 chr4 48073459 48073542 -107556578 + ORR1C1 LTR MaLR 300 384 0 1 951 267 237 0 106 chr4 48073594 48073679 -107556441 + B4A SINE B4 217 292 0 1 951 453 268 0 75 chr4 48073745 48073878 -107556242 + RSINE1 SINE B4 8 130 -35 1 951 234 192 179 152 chr4 48073878 48073929 -107556191 + B2_Mm2 SINE B2 7 195 0 1 951 197 281 143 19 chr4 48074074 48074179 -107555941 - MIR3 SINE MIR -1 207 90 1 951 329 296 60 87 chr4 48075470 48075655 -107554465 + MER5A DNA MER1_type 8 187 -2 1 951 199 320 87 39 chr4 48075776 48075880 -107554240 - L2b LINE L2 -60 3315 3207 1 951 630 274 75 15 chr4 48076088 48076288 -107553832 - B4A SINE B4 -10 282 71 1 951 1109 68 7 0 chr4 48077958 48078104 -107552016 + B1_Mus1 SINE Alu 2 148 0 1 951 522 267 8 0 chr4 48078829 48078949 -107551171 + B1F2 SINE Alu 21 141 -8 1 951 279 326 104 21 chr4 48078954 48079098 -107551022 + MIRb SINE MIR 20 175 -93 1 951 1227 62 0 0 chr4 48079313 48079459 -107550661 + B1_Mus1 SINE Alu 1 146 -2 1 951 183 156 0 0 chr4 48079495 48079527 -107550593 + C-rich Low_complexity Low_complexity 5 36 0 1 951 368 207 81 0 chr4 48079646 48079733 -107550387 + MER3 DNA MER1_type 83 176 -33 1 951 490 358 0 0 chr4 48080149 48080300 -107549820 + MER5B DNA MER1_type 1 151 -27 1 951 817 185 214 0 chr4 48081230 48081408 -107548712 - B3 SINE B2 0 216 1 1 951 586 76 11 21 chr4 48081420 48081514 -107548606 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 1 951 236 337 18 128 chr4 48081529 48081638 -107548482 - PB1D10 SINE Alu -19 98 2 1 951 368 340 20 13 chr4 48082386 48082538 -107547582 - MIRb SINE MIR -31 237 85 1 951 496 333 22 43 chr4 48082847 48083079 -107547041 - RMER15 LTR ERVL -13 562 336 1 951 1024 160 93 46 chr4 48083355 48083571 -107546549 - URR1A DNA MER1_type 0 226 1 1 951 1054 269 22 41 chr4 48084522 48084793 -107545327 + B4 SINE B4 2 267 -25 1 951 297 0 0 0 chr4 48084796 48084829 -107545291 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 951 1272 176 18 5 chr4 48085188 48085410 -107544710 + URR1B DNA MER1_type 1 225 0 1 951 206 293 41 49 chr4 48086331 48086453 -107543667 - L2 LINE L2 -557 2862 2742 1 951 278 288 65 0 chr4 48086807 48086891 -107543229 + MIR SINE MIR 108 202 -66 1 951 500 184 0 93 chr4 48087092 48087200 -107542920 + PB1D10 SINE Alu 18 115 -2 1 951 186 43 0 0 chr4 48088212 48088235 -107541885 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 951 756 151 50 7 chr4 48088235 48088375 -107541745 - B1_Mur1 SINE Alu -2 147 2 1 951 198 200 107 18 chr4 48089520 48089576 -107540544 - L2c LINE L2 -73 3314 3254 1 951 315 336 15 52 chr4 48090709 48090844 -107539276 - MIR SINE MIR -10 252 123 1 951 211 370 87 0 chr4 48091046 48091173 -107538947 - L2a LINE L2 -4 3422 3285 1 951 266 226 58 19 chr4 48091370 48091474 -107538646 + CT-rich Low_complexity Low_complexity 1 108 0 1 951 322 307 0 0 chr4 48091570 48091658 -107538462 + L2a LINE L2 3339 3426 0 1 951 248 220 16 48 chr4 48091690 48091752 -107538368 + L3 LINE CR1 4248 4307 -182 1 951 215 253 179 12 chr4 48091817 48091901 -107538219 + MIRc SINE MIR 73 170 -98 1 951 346 178 37 99 chr4 48092243 48092324 -107537796 - ID4_ SINE ID 0 83 8 1 951 511 294 12 70 chr4 48093318 48093490 -107536630 - RSINE1 SINE B4 0 165 4 1 951 287 245 46 19 chr4 48093782 48093890 -107536230 - L1M5 LINE L1 -440 5684 5574 1 951 22 0 0 0 chr4 48094686 48094708 -107535412 + AT_rich Low_complexity Low_complexity 1 22 0 1 951 1485 54 0 31 chr4 48094721 48094912 -107535208 - B2_Mm1t SINE B2 -8 185 1 1 951 297 0 0 0 chr4 48095069 48095102 -107535018 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 951 228 200 0 0 chr4 48095102 48095157 -107534963 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 951 548 245 168 37 chr4 48095659 48095850 -107534270 - B4 SINE B4 -75 217 2 1 951 252 0 0 0 chr4 48096571 48096599 -107533521 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1 951 513 47 0 0 chr4 48097311 48097375 -107532745 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 951 21 0 0 0 chr4 48098071 48098092 -107532028 + AT_rich Low_complexity Low_complexity 1 21 0 1 951 354 23 0 0 chr4 48099574 48099617 -107530503 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 951 361 252 103 14 chr4 48100290 48100435 -107529685 - L1MB3 LINE L1 0 6171 6014 1 951 587 262 130 9 chr4 48100469 48100692 -107529428 - L1MB3 LINE L1 -273 5910 5661 1 951 954 138 175 5 chr4 48101654 48101843 -107528277 - URR1B DNA MER1_type 0 225 5 1 951 340 269 45 55 chr4 48102575 48102685 -107527435 + MER5A DNA MER1_type 5 113 -76 1 951 562 314 93 41 chr4 48103101 48103370 -107526750 - LTR85a LTR Gypsy? 0 702 420 1 952 865 281 194 20 chr4 48103789 48104130 -107525990 - MTD LTR MaLR 0 419 20 1 952 930 248 109 49 chr4 48104533 48104800 -107525320 - B4A SINE B4 -8 284 2 1 952 315 229 114 0 chr4 48105894 48105964 -107524156 - L2c LINE L2 -72 3315 3238 1 952 443 288 6 136 chr4 48106411 48106513 -107523607 - MER5A DNA MER1_type -29 160 75 1 952 3009 0 0 0 chr4 48106513 48106840 -107523280 - L1Md_T LINE L1 0 6582 6256 1 952 443 288 6 136 chr4 48106840 48106914 -107523206 - MER5A DNA MER1_type -115 74 7 1 952 570 170 0 10 chr4 48107770 48107871 -107522249 - Lx4B LINE L1 -346 6712 6613 1 952 874 201 67 49 chr4 48107875 48108142 -107521978 - Lx5 LINE L1 -855 6195 5924 1 952 3527 23 2 0 chr4 48108142 48108537 -107521583 - MTA_Mm LTR MaLR 0 396 1 1 952 9715 20 0 1 chr4 48108537 48109636 -107520484 - MTA_Mm-int LTR MaLR 0 1098 1 1 952 730 24 0 0 chr4 48109636 48109720 -107520400 - MTA_Mm LTR MaLR 0 396 313 1 952 1039 88 0 0 chr4 48109720 48109857 -107520263 - Lx4B LINE L1 -1130 5928 5792 1 952 481 202 0 0 chr4 48109854 48109938 -107520182 + Lx5 LINE L1 6690 6773 -277 1 952 1346 245 74 32 chr4 48110555 48110987 -107519133 + Lx8 LINE L1 6817 7329 -144 1 952 252 0 0 0 chr4 48110987 48111015 -107519105 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 952 440 256 0 22 chr4 48111193 48111285 -107518835 + PB1D10 SINE Alu 1 90 -27 1 952 431 258 55 55 chr4 48111285 48111315 -107518805 + ID_B1 SINE B4 85 206 -18 1 952 262 250 13 26 chr4 48111318 48111396 -107518724 + GA-rich Low_complexity Low_complexity 2 78 0 1 952 806 30 0 10 chr4 48111397 48111499 -107518621 + (GGAGA)n Simple_repeat Simple_repeat 1 101 0 1 952 249 33 0 0 chr4 48111592 48111622 -107518498 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 952 1021 98 0 27 chr4 48111654 48111801 -107518319 + B1_Mus1 SINE Alu 6 148 0 1 952 264 59 0 0 chr4 48112095 48112129 -107517991 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 952 183 412 26 0 chr4 48112374 48112488 -107517632 + MIR SINE MIR 19 135 -73 1 952 239 333 0 0 chr4 48113689 48113755 -107516365 - L2 LINE L2 -996 2423 2358 1 952 4956 204 99 16 chr4 48114416 48115897 -107514223 + RMER1A Other Other 7 1030 0 1 952 1980 185 0 78 chr4 48116208 48116631 -107513489 - MTD LTR MaLR 0 419 30 1 952 1315 311 128 10 chr4 48116644 48117151 -107512969 - ERVL-E-int LTR ERVL -1925 3742 3176 1 952 414 289 136 29 chr4 48117337 48117579 -107512541 - MLT2E LTR ERVL -341 287 20 1 952 691 255 12 0 chr4 48117658 48117819 -107512301 + RSINE1 SINE B4 3 165 0 1 952 1083 83 12 6 chr4 48118611 48118781 -107511339 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 1 952 1287 166 9 30 chr4 48119247 48119477 -107510643 - URR1A DNA MER1_type -1 225 1 1 952 1012 291 109 42 chr4 48119942 48120483 -107509637 - MLT1G3 LTR MaLR -18 577 1 1 952 490 231 0 61 chr4 48120641 48120756 -107509364 + PB1D10 SINE Alu 10 117 0 1 952 1347 77 27 6 chr4 48121243 48121426 -107508694 - B2_Mm1a SINE B2 -5 188 2 1 952 189 0 0 0 chr4 48121431 48121452 -107508668 + (T)n Simple_repeat Simple_repeat 1 21 0 1 952 246 328 57 50 chr4 48123501 48123642 -107506478 - MamRep605 Unknown Unknown -344 532 391 1 952 389 277 42 35 chr4 48124416 48124558 -107505562 - ID_B1 SINE B4 -1 223 81 1 952 282 116 0 0 chr4 48125260 48125303 -107504817 + (CATG)n Simple_repeat Simple_repeat 1 43 0 1 952 1472 262 37 12 chr4 48125307 48125717 -107504403 - Lx9 LINE L1 -171 7473 7054 1 952 365 171 26 0 chr4 48125752 48125828 -107504292 + B1_Mur3 SINE Alu 70 147 -2 1 952 261 192 0 0 chr4 48126355 48126407 -107503713 + MTE2a LTR MaLR 1 52 -327 1 952 219 69 0 0 chr4 48126465 48126494 -107503626 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 952 248 211 70 0 chr4 48126544 48126601 -107503519 + MTE2a LTR MaLR 65 125 -254 1 952 251 97 159 16 chr4 48126599 48126662 -107503458 - ORR1E LTR MaLR -4 375 304 1 952 185 132 26 0 chr4 48126662 48126700 -107503420 + T-rich Low_complexity Low_complexity 2 40 0 1 952 1221 54 0 0 chr4 48126700 48126847 -107503273 - B1_Mus2 SINE Alu 0 147 1 1 952 329 256 12 0 chr4 48126943 48127025 -107503095 - ORR1E LTR MaLR -171 188 106 1 952 797 244 75 20 chr4 48127313 48127514 -107502606 - B3 SINE B2 0 216 5 1 952 633 265 149 41 chr4 48127519 48127834 -107502286 + ORR1E LTR MaLR 6 354 -5 1 952 4752 106 24 0 chr4 48128022 48128699 -107501421 - L1_Mus3 LINE L1 -3 6635 5943 1 952 369 0 0 0 chr4 48128795 48128836 -107501284 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 1 952 203 0 0 36 chr4 48128994 48129022 -107501098 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 952 351 0 0 0 chr4 48129323 48129362 -107500758 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 952 308 210 12 0 chr4 48129769 48129850 -107500270 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 952 244 259 139 42 chr4 48129854 48130019 -107500101 - MLT1B LTR MaLR -195 195 15 2 952 1589 58 0 0 chr4 48130189 48130378 -107499742 - B2_Mm1t SINE B2 -4 189 1 2 952 504 0 0 0 chr4 48131191 48131247 -107498873 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 952 354 171 91 83 chr4 48131275 48131352 -107498768 - L1MC LINE L1 -3705 2441 2363 2 952 1539 57 16 0 chr4 48131352 48131544 -107498576 - B2_Mm2 SINE B2 0 195 1 2 952 354 171 91 83 chr4 48131544 48131587 -107498533 - L1MC LINE L1 -3784 2362 2320 2 952 1055 253 32 72 chr4 48131607 48132008 -107498112 + MLT1B LTR MaLR 6 390 0 2 952 337 262 29 10 chr4 48132011 48132115 -107498005 - L1M3 LINE L1 -3840 2300 2195 2 952 285 247 23 12 chr4 48132180 48132266 -107497854 - MLT1B LTR MaLR -298 92 6 2 952 546 216 88 13 chr4 48132268 48132427 -107497693 + L1MC LINE L1 2293 2463 -3683 2 952 408 182 0 0 chr4 48132577 48132665 -107497455 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 952 1203 212 0 0 chr4 48132743 48132946 -107497174 - B3 SINE B2 -12 204 2 2 952 11151 155 37 18 chr4 48133499 48135852 -107494268 - Lx7 LINE L1 -1457 6239 3830 2 952 291 260 15 160 chr4 48136215 48136421 -107493699 - MER115 DNA Tip100 -10 683 508 2 952 243 0 0 0 chr4 48136499 48136526 -107493594 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 952 324 0 0 0 chr4 48136526 48136561 -107493559 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 952 738 299 36 0 chr4 48136571 48136765 -107493355 - B4A SINE B4 -86 206 6 2 952 198 0 0 0 chr4 48137479 48137501 -107492619 + (CGGGG)n Simple_repeat Simple_repeat 1 22 0 2 952 833 115 43 0 chr4 48138611 48138750 -107491370 + B1_Mur4 SINE Alu 6 150 0 2 952 288 317 166 21 chr4 48138795 48139121 -107490999 - L1MC4a LINE L1 -96 7899 7527 2 952 1055 122 0 0 chr4 48139380 48139527 -107490593 + B1_Mus1 SINE Alu 2 148 0 2 952 761 261 110 79 chr4 48139651 48140080 -107490040 - L1MC4a LINE L1 -1050 6832 6391 2 952 235 227 69 83 chr4 48140178 48140322 -107489798 - L1MC4a LINE L1 -1617 6168 6027 2 952 250 321 127 22 chr4 48140799 48141067 -107489053 + L1M5 LINE L1 5535 5830 -294 2 952 318 233 19 0 chr4 48141347 48141506 -107488614 + CT-rich Low_complexity Low_complexity 1 162 0 2 952 243 231 62 0 chr4 48141526 48141591 -107488529 - L1MEg LINE L1 -4714 1782 1714 2 952 335 197 206 21 chr4 48141604 48141842 -107488278 - L1MEg LINE L1 -4742 1754 1473 2 952 1132 68 7 0 chr4 48142355 48142501 -107487619 + B1_Mus1 SINE Alu 2 148 0 2 952 693 205 59 13 chr4 48143141 48143294 -107486826 - RSINE1 SINE B4 -2 163 4 2 952 1191 75 0 0 chr4 48143639 48143786 -107486334 - B1_Mus2 SINE Alu 0 147 1 2 952 396 0 0 0 chr4 48143945 48143989 -107486131 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 952 556 190 10 0 chr4 48143989 48144089 -107486031 - RSINE1 SINE B4 -63 102 2 2 952 997 181 83 0 chr4 48144376 48144569 -107485551 - B3 SINE B2 -5 211 3 2 952 288 0 0 0 chr4 48145458 48145490 -107484630 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 2 952 240 294 79 29 chr4 48147060 48147200 -107482920 - L3 LINE CR1 -1564 2925 2779 2 952 266 315 61 71 chr4 48147868 48148066 -107482054 - HAL1 LINE L1 -2308 199 4 2 952 287 179 0 96 chr4 48148294 48148492 -107481628 + (CAG)n Simple_repeat Simple_repeat 1 179 0 2 952 520 268 45 13 chr4 48149576 48149731 -107480389 - RSINE1 SINE B4 -2 163 4 2 952 357 266 18 9 chr4 48149735 48149845 -107480275 - PB1D10 SINE Alu 0 117 7 2 952 262 312 100 9 chr4 48150037 48150147 -107479973 - L3 LINE CR1 -835 3654 3535 2 952 500 81 0 13 chr4 48150440 48150515 -107479605 + (TCCC)n Simple_repeat Simple_repeat 2 75 0 2 952 227 286 0 14 chr4 48150545 48150616 -107479504 - ID4_ SINE ID -11 72 3 2 952 472 264 0 18 chr4 48150618 48150730 -107479390 - PB1 SINE Alu -4 123 14 2 952 224 258 14 43 chr4 48150676 48150745 -107479375 - B4A SINE B4 -142 150 84 2 952 471 295 14 28 chr4 48151141 48151284 -107478836 + B4A SINE B4 1 141 -151 2 952 1657 175 81 33 chr4 48151294 48151689 -107478431 - MTC LTR MaLR -1 420 7 2 952 321 100 0 0 chr4 48151900 48151950 -107478170 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 952 372 77 0 0 chr4 48152206 48152258 -107477862 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 2 952 322 269 199 50 chr4 48152452 48152593 -107477527 - RSINE1 SINE B4 0 165 4 2 952 245 299 35 0 chr4 48152601 48152688 -107477432 - L1MEc LINE L1 -4502 1898 1809 2 952 279 299 23 0 chr4 48154012 48154099 -107476021 + RSINE1 SINE B4 1 89 -76 2 952 24 32 0 0 chr4 48154158 48154189 -107475931 + AT_rich Low_complexity Low_complexity 1 31 0 2 952 1239 54 0 0 chr4 48154211 48154359 -107475761 + B1_Mus1 SINE Alu 1 148 0 2 952 210 71 0 0 chr4 48154359 48154387 -107475733 + (A)n Simple_repeat Simple_repeat 1 28 0 2 952 23 0 0 0 chr4 48154396 48154419 -107475701 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 420 290 88 71 chr4 48154997 48155235 -107474885 + B4 SINE B4 51 292 0 2 952 195 100 0 0 chr4 48155262 48155292 -107474828 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 952 417 177 0 0 chr4 48155291 48155370 -107474750 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 952 239 399 14 36 chr4 48156163 48156301 -107473819 - ID_B1 SINE B4 -2 222 88 2 952 718 148 109 22 chr4 48156570 48156708 -107473412 + B1_Mur4 SINE Alu 1 150 0 2 952 305 262 96 51 chr4 48157046 48157213 -107472907 - Lx7 LINE L1 0 7696 7521 2 952 1268 75 63 6 chr4 48157213 48157388 -107472732 + B2_Mm2 SINE B2 1 185 -10 2 952 305 262 96 51 chr4 48157388 48157417 -107472703 - Lx7 LINE L1 -176 7520 7492 2 952 435 287 86 0 chr4 48157426 48157600 -107472520 - Lx7 LINE L1 -378 7318 7130 2 952 186 268 18 18 chr4 48157698 48157755 -107472365 + MIRb SINE MIR 129 185 -83 2 952 994 244 73 7 chr4 48157894 48158166 -107471954 - B4A SINE B4 -1 291 2 2 952 710 169 40 7 chr4 48158317 48158466 -107471654 + URR1A DNA MER1_type 46 199 -27 2 952 278 288 0 0 chr4 48158671 48158737 -107471383 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 2 952 599 250 39 39 chr4 48159510 48159689 -107470431 - ID_B1 SINE B4 0 224 46 2 952 263 222 0 0 chr4 48159841 48159895 -107470225 - ID4_ SINE ID -28 55 2 2 952 788 220 94 5 chr4 48159959 48160151 -107469969 - B3 SINE B2 -6 210 2 2 952 1151 280 73 30 chr4 48160201 48160642 -107469478 - L1MA6 LINE L1 -102 6198 5739 2 952 207 0 0 0 chr4 48160647 48160670 -107469450 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 952 488 112 0 12 chr4 48160707 48160788 -107469332 - B2_Mm2 SINE B2 -114 81 2 2 952 912 234 33 25 chr4 48160802 48161047 -107469073 - L1MA6 LINE L1 -570 5730 5484 2 952 190 254 17 0 chr4 48161061 48161120 -107469000 - L2a LINE L2 -149 3277 3218 2 952 274 275 166 22 chr4 48161225 48161448 -107468672 - L2a LINE L2 -343 3076 2822 2 952 496 302 143 19 chr4 48161575 48161791 -107468329 - RMER15 LTR ERVL -15 560 318 2 952 283 254 48 170 chr4 48161847 48161994 -107468126 - RMER15 LTR ERVL -446 129 1 2 952 798 268 165 18 chr4 48162740 48163139 -107466981 - L1ME2 LINE L1 -248 6089 5632 2 952 319 263 17 26 chr4 48163206 48163323 -107466797 - PB1D10 SINE Alu -1 116 1 2 952 654 145 119 22 chr4 48163492 48163626 -107466494 + B1_Mur4 SINE Alu 3 149 -1 2 952 277 276 89 35 chr4 48164110 48164313 -107465807 - L1ME2 LINE L1 -4985 1415 1202 2 952 977 45 8 0 chr4 48164317 48164451 -107465669 - B1_Mus1 SINE Alu -4 144 10 2 952 241 256 156 23 chr4 48164510 48164638 -107465482 - L1ME2 LINE L1 -5295 1105 961 2 952 236 316 53 74 chr4 48164757 48165000 -107465120 - L1ME2 LINE L1 -5608 792 555 2 952 330 312 77 43 chr4 48166148 48166382 -107463738 - L3 LINE CR1 -1597 2892 2651 2 952 349 340 82 50 chr4 48167060 48167401 -107462719 - L1ME3B LINE L1 -129 6111 5760 2 952 506 271 92 14 chr4 48167648 48167790 -107462330 + ID_B1 SINE B4 72 224 0 2 952 514 264 94 71 chr4 48167799 48167922 -107462198 - L1MEe LINE L1 -2683 3463 3344 2 952 287 0 0 50 chr4 48167922 48167962 -107462158 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 2 952 853 157 0 82 chr4 48167963 48168109 -107462011 - B1_Mus2 SINE Alu -13 134 1 2 952 514 264 94 71 chr4 48168109 48168407 -107461713 - L1MEe LINE L1 -2803 3343 3030 2 952 1806 166 43 54 chr4 48168624 48168994 -107461126 - ORR1C1 LTR MaLR -12 366 1 2 952 713 165 142 27 chr4 48169054 48169223 -107460897 + RLTR20C LTR ERVK 2 212 -329 2 952 225 83 0 0 chr4 48169226 48169262 -107460858 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 952 327 292 10 10 chr4 48169262 48169355 -107460765 + RLTR20A1 LTR ERVK 455 547 -4 2 952 243 0 0 0 chr4 48169421 48169448 -107460672 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 952 1052 110 0 0 chr4 48169449 48169585 -107460535 - B1_Mus1 SINE Alu -12 136 1 2 952 387 295 208 18 chr4 48169607 48169724 -107460396 - L1MEe LINE L1 -3179 2967 2831 2 952 282 29 0 0 chr4 48169724 48169759 -107460361 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 952 387 295 208 18 chr4 48169759 48170021 -107460099 - L1MEe LINE L1 -3316 2830 2516 2 952 893 322 17 34 chr4 48170029 48170097 -107460023 + B4A SINE B4 2 65 -227 2 952 2354 112 18 15 chr4 48170097 48170425 -107459695 - ORR1A4 LTR MaLR 0 329 1 2 952 893 322 17 34 chr4 48170425 48170652 -107459468 + B4A SINE B4 66 292 0 2 952 338 307 126 62 chr4 48170743 48171072 -107459048 - L1MEe LINE L1 -3712 2454 2104 2 952 1072 177 113 15 chr4 48171072 48171267 -107458853 - B3 SINE B2 0 216 3 2 952 338 307 126 62 chr4 48171267 48171374 -107458746 - L1MEe LINE L1 -4063 2103 1990 2 952 27 29 0 0 chr4 48172673 48172707 -107457413 + AT_rich Low_complexity Low_complexity 1 34 0 2 952 319 276 46 37 chr4 48173056 48173165 -107456955 + PB1D10 SINE Alu 1 110 -7 2 952 22 0 0 0 chr4 48173177 48173199 -107456921 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 820 48 0 28 chr4 48175545 48175653 -107454467 + B1_Mus1 SINE Alu 1 105 -43 2 952 189 0 0 0 chr4 48175671 48175692 -107454428 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 2 952 1246 72 121 0 chr4 48176227 48176393 -107453727 + B2_Mm2 SINE B2 2 187 -8 2 952 25 0 0 0 chr4 48176407 48176432 -107453688 + AT_rich Low_complexity Low_complexity 1 25 0 2 952 211 220 0 0 chr4 48176477 48176527 -107453593 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 952 218 327 82 88 chr4 48177034 48177205 -107452915 + L2b LINE L2 3131 3300 -75 3 952 432 250 182 49 chr4 48177265 48177408 -107452712 + RSINE1 SINE B4 3 164 -1 3 952 21 36 0 0 chr4 48177408 48177436 -107452684 + AT_rich Low_complexity Low_complexity 1 28 0 3 952 199 304 28 64 chr4 48177489 48177598 -107452522 + L2 LINE L2 2658 2762 -657 3 952 772 83 9 0 chr4 48178664 48178772 -107451348 + B1_Mm SINE Alu 39 147 0 3 952 185 229 16 0 chr4 48178783 48178818 -107451302 + (TATG)n Simple_repeat Simple_repeat 4 38 0 3 952 342 45 0 0 chr4 48178818 48178862 -107451258 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 952 185 229 16 0 chr4 48178862 48178887 -107451233 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 952 562 95 39 33 chr4 48178945 48179098 -107451022 + (GTGTG)n Simple_repeat Simple_repeat 1 154 0 3 952 445 135 38 38 chr4 48179098 48179229 -107450891 + (TG)n Simple_repeat Simple_repeat 2 132 0 3 952 434 262 24 48 chr4 48179229 48179397 -107450723 - RSINE1 SINE B4 0 165 2 3 952 284 327 101 28 chr4 48179916 48180133 -107449987 + RLTR21 LTR ERVK 1171 1403 -169 3 952 902 237 10 21 chr4 48180217 48180411 -107449709 - B3 SINE B2 -10 206 15 3 952 33940 77 19 4 chr4 48181596 48186845 -107443275 + L1Md_F2 LINE L1 259 5586 -297 3 952 8327 58 0 10 chr4 48186845 48187851 -107442269 + L1Md_F2 LINE L1 5587 6582 0 3 952 394 16 0 87 chr4 48187925 48187994 -107442126 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 3 952 234 154 39 0 chr4 48188187 48188265 -107441855 + GA-rich Low_complexity Low_complexity 2 82 0 3 952 365 250 60 0 chr4 48188427 48188527 -107441593 + L1ME1 LINE L1 6073 6178 -1 3 952 231 188 132 36 chr4 48188992 48189075 -107441045 + L1MB4 LINE L1 6087 6177 -3 3 952 3446 51 5 2 chr4 48189132 48189527 -107440593 - MTA_Mm LTR MaLR 0 396 1 3 952 2146 170 20 67 chr4 48191247 48191650 -107438470 + ORR1C2 LTR MaLR 1 384 0 3 952 650 24 0 12 chr4 48192027 48192111 -107438009 + L1Md_T LINE L1 6500 6582 0 3 952 843 244 0 6 chr4 48192430 48192618 -107437502 + B3A SINE B2 1 182 -34 3 952 198 103 0 0 chr4 48192619 48192648 -107437472 + (TATG)n Simple_repeat Simple_repeat 3 31 0 3 952 248 190 17 0 chr4 48193128 48193186 -107436934 + T-rich Low_complexity Low_complexity 2 60 0 3 952 888 133 26 59 chr4 48196216 48196368 -107433752 - B1_Mus2 SINE Alu 0 147 1 3 952 282 246 31 0 chr4 48198453 48198518 -107431602 - PB1D10 SINE Alu 0 117 51 3 952 1114 185 42 5 chr4 48199778 48199990 -107430130 - URR1B DNA MER1_type 0 225 6 3 952 1532 236 98 69 chr4 48200430 48201020 -107429100 + RLTR31_Mur LTR ERVK 11 549 -4 3 952 21 57 0 0 chr4 48201031 48201066 -107429054 + AT_rich Low_complexity Low_complexity 1 35 0 3 952 712 181 160 66 chr4 48201394 48201677 -107428443 - MTE2b LTR MaLR -3 376 7 3 952 375 185 104 42 chr4 48203061 48203157 -107426963 - MTD LTR MaLR 0 419 318 3 952 320 257 13 26 chr4 48203138 48203214 -107426906 - MTC LTR MaLR -322 99 25 3 952 436 252 44 0 chr4 48203555 48203690 -107426430 - MamRep434 DNA TcMar -47 379 239 3 952 880 187 203 6 chr4 48204217 48204394 -107425726 - B3 SINE B2 -4 212 1 3 952 649 172 34 25 chr4 48205273 48205392 -107424728 - PB1D9 SINE Alu 0 120 1 3 952 185 194 0 0 chr4 48206787 48206823 -107423297 + L2 LINE L2 2303 2338 -1081 3 952 1361 167 18 0 chr4 48208505 48208727 -107421393 + URR1A DNA MER1_type 1 226 0 3 952 708 259 72 5 chr4 48209947 48210141 -107419979 - B3 SINE B2 -9 207 1 3 952 576 29 0 0 chr4 48210265 48210335 -107419785 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 952 711 131 105 24 chr4 48210893 48211045 -107419075 + B2_Mm2 SINE B2 6 180 -36 3 952 243 88 0 0 chr4 48211046 48211080 -107419040 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 952 248 189 83 42 chr4 48212046 48212118 -107418002 - PB1D9 SINE Alu -1 119 45 3 952 381 22 0 0 chr4 48212264 48212310 -107417810 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 952 289 311 37 22 chr4 48212311 48212446 -107417674 - L1MC LINE L1 -1999 5786 5650 3 952 281 255 132 20 chr4 48212597 48212749 -107417371 - L1MD LINE L1 -933 5213 5045 3 952 216 333 45 0 chr4 48212893 48212907 -107417213 + ID SINE ID 69 85 -139 3 952 260 271 122 20 chr4 48212907 48213005 -107417115 + PB1D10 SINE Alu 2 109 -8 3 952 3792 109 26 0 chr4 48213178 48213754 -107416366 + Lx4A LINE L1 3841 4431 -1446 3 952 3779 108 36 17 chr4 48213750 48214490 -107415630 + Lx4A LINE L1 5439 6198 -860 3 952 2549 128 113 0 chr4 48214487 48214893 -107415227 + Lx4A LINE L1 6461 6912 -146 3 952 905 238 5 32 chr4 48215144 48215331 -107414789 - B3A SINE B2 -16 182 1 3 952 549 200 36 0 chr4 48216086 48216196 -107413924 - B1_Mur2 SINE Alu -24 125 12 3 952 1068 101 29 6 chr4 48218367 48218537 -107411583 + URR1A DNA MER1_type 53 226 0 3 952 384 274 70 38 chr4 48219194 48219380 -107410740 - L1MB7 LINE L1 -16 6168 5977 3 952 1547 64 16 5 chr4 48219454 48219643 -107410477 - B2_Mm2 SINE B2 -3 192 2 3 952 541 310 37 61 chr4 48220592 48220863 -107409257 + B4A SINE B4 1 278 -14 3 952 797 193 0 7 chr4 48222930 48223071 -107407049 + B1_Mur2 SINE Alu 2 141 -8 3 952 984 316 53 33 chr4 48223295 48223838 -107406282 + Lx8 LINE L1 6739 7292 -181 3 952 374 240 9 9 chr4 48224225 48224330 -107405790 + PB1D10 SINE Alu 4 108 -9 3 952 267 246 58 0 chr4 48224338 48224407 -107405713 + ID4 SINE ID 1 73 -10 3 952 2516 287 84 24 chr4 48225282 48226531 -107403589 + Lx9 LINE L1 6109 7432 -212 3 952 312 120 0 0 chr4 48226564 48226614 -107403506 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 952 5221 227 81 75 chr4 48226759 48227875 -107402245 + L1_Rod LINE L1 3111 4140 -1707 3 952 2321 126 64 26 chr4 48227875 48228265 -107401855 + RLTR44A LTR ERVK 1 405 0 3 952 5221 227 81 75 chr4 48228265 48229537 -107400583 + L1_Rod LINE L1 4141 5512 -335 3 952 243 284 60 0 chr4 48230410 48230477 -107399643 + ID4 SINE ID 1 71 -12 3 952 714 302 104 42 chr4 48231315 48231719 -107398401 + LTR40c LTR ERVL 8 436 -29 3 952 361 331 77 21 chr4 48232547 48232741 -107397379 + MIRb SINE MIR 33 237 -31 3 952 278 248 73 103 chr4 48232750 48232984 -107397136 + L1MEg LINE L1 1756 1982 -4260 3 952 1411 58 15 31 chr4 48233467 48233663 -107396457 + B2_Mm2 SINE B2 2 194 -1 3 952 772 258 25 57 chr4 48233932 48234032 -107396088 + L1M2 LINE L1 5051 5152 -991 3 952 4681 124 8 50 chr4 48234032 48234300 -107395820 + Lx2 LINE L1 6240 6481 -516 3 952 642 26 0 0 chr4 48234300 48234376 -107395744 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 14 4681 124 8 50 chr4 48234376 48234899 -107395221 + Lx2 LINE L1 6482 6997 0 3 953 772 258 25 57 chr4 48234899 48234918 -107395202 + L1M2 LINE L1 5153 5157 -986 3 953 194 0 39 0 chr4 48234918 48234944 -107395176 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 953 772 256 46 23 chr4 48234944 48235213 -107394907 + L1M2 LINE L1 5158 5442 -858 3 953 277 196 189 35 chr4 48235224 48235393 -107394727 + L1MEg LINE L1 3875 4069 -2077 3 953 232 329 38 19 chr4 48235501 48235659 -107394461 + L1MEg2 LINE L1 52 212 -6240 3 953 437 195 81 0 chr4 48236043 48236130 -107393990 - B1_Mur2 SINE Alu -2 147 54 3 953 263 149 173 13 chr4 48236747 48236822 -107393298 - Lx8 LINE L1 -6 7467 7381 3 953 286 284 57 0 chr4 48238544 48238632 -107391488 + Kanga1 DNA Tc2 656 748 -997 3 953 407 219 31 138 chr4 48239014 48239173 -107390947 - B1_Mur1 SINE Alu -6 143 2 3 953 359 286 78 31 chr4 48241019 48241245 -107388875 + L1ME1 LINE L1 4184 4431 -1715 3 953 1033 135 0 0 chr4 48241246 48241387 -107388733 + B1_Mur4 SINE Alu 4 144 -6 3 953 334 263 1 0 chr4 48241426 48241519 -107388601 + L1MD3 LINE L1 7600 7680 -315 3 953 513 320 70 55 chr4 48241806 48242513 -107387607 + L1ME1 LINE L1 4436 5157 -989 3 953 635 309 29 5 chr4 48242525 48242698 -107387422 + B3 SINE B2 1 177 -39 3 953 582 114 0 0 chr4 48242698 48242786 -107387334 + (CCTA)n Simple_repeat Simple_repeat 4 91 0 3 953 635 309 29 5 chr4 48242786 48242820 -107387300 + B3 SINE B2 178 213 -3 3 953 331 329 59 0 chr4 48242869 48242954 -107387166 + PB1D10 SINE Alu 1 90 -27 3 953 277 220 13 21 chr4 48243011 48243086 -107387034 + B1F SINE Alu 58 132 -17 3 953 294 50 0 0 chr4 48243088 48243128 -107386992 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 953 1174 266 132 14 chr4 48243131 48243630 -107386490 + Lx9 LINE L1 7067 7624 -20 3 953 636 294 7 0 chr4 48243660 48243796 -107386324 + RSINE1 SINE B4 21 157 -8 3 953 972 259 101 50 chr4 48243850 48244681 -107385439 + L1MB2 LINE L1 4701 5563 -608 3 953 763 278 75 117 chr4 48244714 48245073 -107385047 + Tigger7 DNA MER2_type 54 397 -2094 3 953 545 264 60 81 chr4 48245203 48245667 -107384453 + RMER20A LTR ERVK 1 455 -405 3 953 411 243 58 7 chr4 48245688 48245825 -107384295 + L1MB2 LINE L1 5959 6102 -69 3 953 332 293 134 27 chr4 48245880 48246066 -107384054 + L1ME1 LINE L1 5192 5397 -749 3 953 567 207 35 0 chr4 48246119 48246235 -107383885 + PB1D9 SINE Alu 1 120 0 3 953 234 239 114 0 chr4 48246261 48246349 -107383771 + L1ME1 LINE L1 5842 5939 -240 3 953 7394 55 5 4 chr4 48246822 48247795 -107382325 - L1_Mus1 LINE L1 0 6567 5594 3 953 1368 70 5 51 chr4 48247915 48248112 -107382008 + B2_Mm2 SINE B2 1 188 -7 3 953 231 304 117 21 chr4 48248619 48248713 -107381407 + MIRb SINE MIR 50 152 -116 3 953 1142 76 0 0 chr4 48250515 48250660 -107379460 + B1_Mus2 SINE Alu 2 146 -1 3 953 34 0 0 0 chr4 48250660 48250694 -107379426 + AT_rich Low_complexity Low_complexity 1 34 0 3 953 231 238 238 0 chr4 48251248 48251311 -107378809 + L2c LINE L2 3304 3381 -6 3 953 388 314 156 7 chr4 48251800 48251941 -107378179 + MIRb SINE MIR 14 175 -93 3 953 336 336 18 0 chr4 48252650 48252763 -107377357 - Tigger5 DNA MER2_type 0 2406 2292 3 953 547 353 68 5 chr4 48252765 48252970 -107377150 - Tigger5 DNA MER2_type -2171 235 18 3 953 217 235 118 0 chr4 48253633 48253684 -107376436 - L2c LINE L2 -36 3351 3295 3 953 1532 196 129 68 chr4 48254725 48255309 -107374811 + Lx4A LINE L1 6411 7047 -3 3 953 240 279 44 0 chr4 48255470 48255538 -107374582 + MER5A1 DNA MER1_type 9 73 -93 4 953 25 0 0 0 chr4 48256283 48256308 -107373812 + AT_rich Low_complexity Low_complexity 1 25 0 4 953 189 147 0 0 chr4 48257208 48257242 -107372878 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 4 953 650 228 40 8 chr4 48258021 48258145 -107371975 + RSINE1 SINE B4 3 130 -35 4 953 29 70 0 0 chr4 48258872 48258929 -107371191 + AT_rich Low_complexity Low_complexity 1 57 0 4 953 20321 23 0 1 chr4 48259007 48261512 -107368608 + L1Md_T LINE L1 3083 5586 -297 4 953 8461 31 0 1 chr4 48261512 48262509 -107367611 + L1Md_T LINE L1 5587 6582 0 4 953 21 0 0 0 chr4 48262509 48262530 -107367590 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 681 110 0 0 chr4 48262532 48262659 -107367461 + (TAG)n Simple_repeat Simple_repeat 2 128 0 4 953 415 330 0 0 chr4 48262926 48263026 -107367094 + PB1D10 SINE Alu 12 111 -6 4 953 225 132 0 0 chr4 48263818 48263856 -107366264 + (T)n Simple_repeat Simple_repeat 1 38 0 4 953 7791 34 6 0 chr4 48263860 48264837 -107365283 - L1Md_F2 LINE L1 -3 6579 5597 4 953 533 228 177 0 chr4 48265145 48265354 -107364766 + L1MA7 LINE L1 6064 6308 -4 4 953 301 291 113 69 chr4 48265677 48265836 -107364284 + MER5A1 DNA MER1_type 1 166 0 4 953 1597 98 217 4 chr4 48268516 48268783 -107361337 + ORR1A3 LTR MaLR 3 326 0 4 953 328 239 65 0 chr4 48269999 48270091 -107360029 - MLT1D LTR MaLR 0 505 408 4 953 456 163 0 0 chr4 48270149 48270235 -107359885 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 953 1125 131 10 5 chr4 48270256 48270448 -107359672 - Lx LINE L1 -3 6651 6459 4 953 586 216 169 7 chr4 48271031 48271185 -107358935 - B3A SINE B2 -18 180 2 4 953 2158 150 37 34 chr4 48271937 48272344 -107357776 - MTC LTR MaLR -8 413 6 4 953 243 0 0 0 chr4 48272670 48272697 -107357423 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 4 953 803 254 5 0 chr4 48272697 48272886 -107357234 - Lx5 LINE L1 -19 7031 6842 4 953 1727 209 67 27 chr4 48272886 48273553 -107356567 + RMER19B LTR ERVK 1 743 -159 4 953 685 218 108 13 chr4 48273551 48273709 -107356411 + MTD LTR MaLR 67 239 -180 4 953 843 200 129 21 chr4 48273780 48273974 -107356146 - B3 SINE B2 0 216 2 4 953 845 133 139 0 chr4 48275234 48275392 -107354728 + B2_Mm2 SINE B2 2 181 -14 4 953 655 48 10 0 chr4 48275393 48275496 -107354624 + L1Md_F2 LINE L1 6475 6578 -4 4 953 936 172 55 6 chr4 48276106 48276287 -107353833 - URR1A DNA MER1_type -36 190 1 4 953 235 224 104 0 chr4 48276938 48277005 -107353115 - PB1D10 SINE Alu -23 94 21 4 953 217 213 0 0 chr4 48278196 48278243 -107351877 + GA-rich Low_complexity Low_complexity 2 48 0 4 953 202 247 20 101 chr4 48278355 48278454 -107351666 - MIRb SINE MIR -58 210 120 4 953 709 165 224 17 chr4 48278489 48278668 -107351452 + B3 SINE B2 1 216 0 4 953 21 36 0 0 chr4 48278830 48278858 -107351262 + AT_rich Low_complexity Low_complexity 1 28 0 4 953 238 224 14 82 chr4 48279398 48279471 -107350649 + RMER15 LTR ERVL 9 76 -499 4 953 468 260 73 64 chr4 48279474 48279692 -107350428 + RMER15 LTR ERVL 31 250 -325 4 953 230 208 94 0 chr4 48279695 48279748 -107350372 + RMER15 LTR ERVL 518 575 0 4 953 351 0 0 0 chr4 48280233 48280272 -107349848 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 953 1638 196 62 20 chr4 48280571 48280925 -107349195 + ORR1D1 LTR MaLR 6 374 0 4 953 755 211 0 39 chr4 48281660 48281813 -107348307 + B1_Mur3 SINE Alu 1 147 -2 4 953 180 0 0 0 chr4 48281813 48281833 -107348287 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 953 25 0 0 0 chr4 48281912 48281937 -107348183 + AT_rich Low_complexity Low_complexity 1 25 0 4 953 438 231 15 90 chr4 48281978 48282111 -107348009 + Lx8 LINE L1 6675 6797 -676 4 953 674 219 149 6 chr4 48282144 48282305 -107347815 - B3 SINE B2 -30 186 3 4 953 1107 302 106 13 chr4 48282306 48282444 -107347676 + Lx8 LINE L1 6794 6935 -538 4 953 1790 41 5 0 chr4 48282444 48282662 -107347458 + L1_Mus1 LINE L1 6349 6567 0 4 953 1107 302 106 13 chr4 48282662 48283021 -107347099 + Lx8 LINE L1 6936 7327 -146 4 953 289 43 21 21 chr4 48283021 48283069 -107347051 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 953 1107 302 106 13 chr4 48283069 48283191 -107346929 + Lx8 LINE L1 7328 7470 -3 4 953 188 355 98 37 chr4 48285067 48285231 -107344889 - L4 LINE RTE -1739 290 117 4 953 199 368 0 14 chr4 48285306 48285375 -107344745 - MIR SINE MIR -107 101 34 4 953 608 254 168 16 chr4 48285496 48285740 -107344380 + B4 SINE B4 2 282 -10 4 953 594 0 0 0 chr4 48285741 48285807 -107344313 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 953 273 57 0 0 chr4 48286562 48286597 -107343523 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 4 953 1205 48 0 0 chr4 48286599 48286746 -107343374 - B1_Mus2 SINE Alu 0 147 1 4 953 1149 274 122 19 chr4 48287055 48287521 -107342599 + Lx8 LINE L1 6758 7271 -202 4 953 318 167 0 0 chr4 48287571 48287631 -107342489 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 953 1235 105 35 0 chr4 48287792 48287992 -107342128 + Lx2A1 LINE L1 6802 7008 0 4 953 420 287 118 65 chr4 48288014 48288167 -107341953 + B4 SINE B4 128 288 -4 4 953 272 232 0 55 chr4 48288751 48288824 -107341296 + ID4_ SINE ID 4 72 -11 4 953 272 206 0 60 chr4 48288761 48288828 -107341292 + tRNA-Ala-GCY_ tRNA tRNA 7 69 -6 4 953 381 95 5 35 chr4 48290581 48290654 -107339466 - B1_Mur4 SINE Alu -1 149 45 4 953 204 40 0 0 chr4 48290856 48290881 -107339239 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 953 598 78 20 0 chr4 48290881 48290983 -107339137 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 953 190 442 12 0 chr4 48291215 48291301 -107338819 + MIR SINE MIR 20 106 -102 4 953 194 200 39 103 chr4 48293046 48293124 -107336996 + MIRc SINE MIR 168 240 -28 4 953 626 122 0 9 chr4 48293650 48293758 -107336362 + (GAA)n Simple_repeat Simple_repeat 2 108 0 4 953 562 291 21 21 chr4 48293933 48294077 -107336043 + B1F SINE Alu 5 148 -1 4 953 305 258 128 154 chr4 48293938 48294094 -107336026 + B4A SINE B4 95 246 -46 4 953 664 235 168 17 chr4 48296262 48296430 -107333690 + B4A SINE B4 3 196 -96 4 953 584 268 31 0 chr4 48296430 48296557 -107333563 + RSINE1 SINE B4 1 131 -34 4 953 288 0 0 0 chr4 48296567 48296599 -107333521 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 953 276 358 147 43 chr4 48297614 48298374 -107331746 + L2b LINE L2 1038 1876 -1543 4 953 235 208 62 0 chr4 48298825 48298873 -107331247 - PB1D7 SINE Alu -3 117 67 4 953 339 193 60 0 chr4 48298831 48298914 -107331206 - ID_B1 SINE B4 -9 215 128 4 953 490 361 140 44 chr4 48299183 48299591 -107330529 + L2b LINE L2 2929 3375 0 4 953 192 339 15 0 chr4 48299594 48299659 -107330461 + L2c LINE L2 3245 3310 -77 4 953 225 94 0 0 chr4 48299662 48299694 -107330426 + (AATTG)n Simple_repeat Simple_repeat 4 35 0 4 953 297 77 45 15 chr4 48299982 48300048 -107330072 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 4 953 31 82 0 0 chr4 48300812 48300885 -107329235 + AT_rich Low_complexity Low_complexity 1 73 0 4 953 787 269 136 7 chr4 48300920 48301193 -107328927 + MER2 DNA MER2_type 38 345 0 4 953 325 313 159 30 chr4 48301254 48301455 -107328665 - MIR SINE MIR -30 232 6 4 953 352 315 47 25 chr4 48301648 48301901 -107328219 - Charlie4a DNA MER1_type -20 488 192 4 953 269 22 0 0 chr4 48303220 48303265 -107326855 - Lx LINE L1 0 6654 6610 4 953 965 219 109 6 chr4 48303927 48304257 -107325863 + Lx9 LINE L1 7277 7640 -4 4 953 31206 78 14 2 chr4 48304276 48309457 -107320663 + L1Md_F2 LINE L1 341 5586 -297 4 953 7856 54 11 2 chr4 48309457 48310444 -107319676 + L1Md_F2 LINE L1 5587 6582 0 4 953 617 306 115 51 chr4 48310769 48311861 -107318259 - L1ME1 LINE L1 -34 6543 5378 4 953 450 257 173 22 chr4 48311876 48312015 -107318105 + MLT1A LTR MaLR 4 163 -202 4 953 634 182 251 5 chr4 48312015 48312214 -107317906 + Lx4B LINE L1 6809 7056 -2 4 953 545 316 64 35 chr4 48312234 48312437 -107317683 + MLT1A LTR MaLR 153 361 -13 4 953 290 291 65 49 chr4 48312481 48312727 -107317393 - L1ME1 LINE L1 -1202 5342 5093 4 953 316 241 25 0 chr4 48312736 48312815 -107317305 - ID4_ SINE ID -1 82 2 4 953 2734 47 11 50 chr4 48312986 48313364 -107316756 - L1Md_F3 LINE L1 -1 6583 6221 4 953 1041 44 0 0 chr4 48313367 48313503 -107316617 - L1Md_F3 LINE L1 -588 5994 5859 4 953 466 292 105 27 chr4 48313504 48313801 -107316319 - MLT1E LTR MaLR 0 680 181 4 953 252 184 0 0 chr4 48313806 48313855 -107316265 + CT-rich Low_complexity Low_complexity 4 52 0 4 953 206 182 36 0 chr4 48313855 48313910 -107316210 + (CATCT)n Simple_repeat Simple_repeat 5 61 0 4 953 287 342 13 0 chr4 48313937 48314013 -107316107 + ID SINE ID 3 79 -145 4 953 530 297 75 27 chr4 48314057 48314244 -107315876 - MLT1E LTR MaLR -441 212 17 4 953 553 205 89 16 chr4 48314244 48314368 -107315752 - ORR1E LTR MaLR -11 348 216 4 953 297 0 0 0 chr4 48314374 48314407 -107315713 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 953 596 204 6 8 chr4 48314407 48314528 -107315592 - ORR1E LTR MaLR -237 122 1 4 953 264 290 54 30 chr4 48314580 48314747 -107315373 - L1ME1 LINE L1 -2717 3827 3657 4 953 260 288 0 63 chr4 48314760 48314823 -107315297 - ID4_ SINE ID -4 79 21 4 953 917 285 119 19 chr4 48314891 48315991 -107314129 - L1ME1 LINE L1 -2931 3613 2400 4 953 1213 81 17 6 chr4 48316018 48316192 -107313928 - B2_Mm2 SINE B2 -5 190 15 4 953 1036 276 63 57 chr4 48316202 48316898 -107313222 - L1MB7 LINE L1 -13 6165 5454 4 953 437 309 129 0 chr4 48316918 48317057 -107313063 + RSINE1 SINE B4 1 157 -8 4 953 634 257 52 36 chr4 48317089 48317283 -107312837 - B3A SINE B2 -1 197 1 4 953 646 254 135 21 chr4 48317302 48317862 -107312258 - L1ME1 LINE L1 -4426 2214 1583 4 953 25 31 0 0 chr4 48317867 48317899 -107312221 + AT_rich Low_complexity Low_complexity 1 32 0 4 953 549 280 72 53 chr4 48317955 48318219 -107311901 - B4 SINE B4 -19 273 5 4 953 454 314 58 49 chr4 48318247 48318471 -107311649 - L1ME1 LINE L1 -4988 1559 1334 4 953 467 277 10 0 chr4 48318510 48318611 -107311509 + PB1D10 SINE Alu 2 103 -14 4 953 225 159 72 0 chr4 48318613 48318682 -107311438 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 953 354 331 96 64 chr4 48318683 48318906 -107311214 - L1ME1 LINE L1 -5248 1299 1066 4 953 7453 35 2 10 chr4 48318906 48319805 -107310315 + L1Md_F2 LINE L1 5677 6568 -14 4 953 504 359 71 34 chr4 48319805 48320139 -107309981 - L1ME1 LINE L1 -5482 1065 701 4 953 218 332 121 67 chr4 48320275 48320498 -107309622 + MIRb SINE MIR 27 261 -7 4 953 2397 69 0 0 chr4 48320912 48321229 -107308891 - ORR1A2 LTR MaLR -8 319 3 4 953 865 154 21 0 chr4 48321523 48321666 -107308454 - B1_Mur2 SINE Alu -3 146 1 5 953 270 115 0 0 chr4 48322074 48322126 -107307994 + (A)n Simple_repeat Simple_repeat 1 52 0 5 953 676 180 61 50 chr4 48322331 48322512 -107307608 - B2_Mm2 SINE B2 -9 186 4 5 953 246 23 45 23 chr4 48322563 48322607 -107307513 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 5 953 252 0 0 0 chr4 48322833 48322861 -107307259 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 953 246 32 0 0 chr4 48322862 48322893 -107307227 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 953 475 278 0 0 chr4 48322893 48323001 -107307119 - PB1D7 SINE Alu -10 110 3 5 953 23 0 0 0 chr4 48323013 48323036 -107307084 + AT_rich Low_complexity Low_complexity 1 23 0 5 953 387 284 127 151 chr4 48323060 48323195 -107306925 - RSINE1 SINE B4 -3 162 29 5 953 715 227 120 155 chr4 48323195 48323570 -107306550 - ORR1D2 LTR MaLR -4 366 5 5 953 387 284 127 151 chr4 48323570 48323600 -107306520 - RSINE1 SINE B4 -137 28 1 5 953 195 69 0 0 chr4 48323957 48323986 -107306134 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 953 833 173 0 41 chr4 48323986 48324131 -107305989 - B1_Mur4 SINE Alu -6 144 6 5 953 429 20 0 0 chr4 48324218 48324268 -107305852 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 953 315 0 0 0 chr4 48324268 48324302 -107305818 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 953 357 43 0 0 chr4 48325100 48325147 -107304973 + (TTTCC)n Simple_repeat Simple_repeat 3 49 0 5 953 633 275 42 106 chr4 48325211 48325306 -107304814 + B4 SINE B4 2 81 -211 5 953 698 229 27 20 chr4 48325306 48325453 -107304667 + B1_Mur2 SINE Alu 1 148 -1 5 953 248 286 0 0 chr4 48325463 48325519 -107304601 + PB1D9 SINE Alu 6 61 -59 5 953 545 231 50 0 chr4 48325518 48325639 -107304481 + B4 SINE B4 162 288 -4 5 953 224 285 97 71 chr4 48325917 48326072 -107304048 + L2c LINE L2 3192 3350 -37 5 953 5891 70 6 63 chr4 48326503 48326788 -107303332 - L1VL2 LINE L1 -2365 1250 965 5 953 1081 22 15 0 chr4 48326788 48326924 -107303196 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 5 953 5891 87 16 36 chr4 48326924 48326943 -107303177 - L1VL2 LINE L1 -5371 964 957 5 953 1207 62 0 0 chr4 48326943 48327089 -107303031 - B1_Mus1 SINE Alu -2 146 1 5 953 5891 87 16 36 chr4 48327089 48327924 -107302196 - L1VL2 LINE L1 -5379 956 127 5 953 657 56 0 0 chr4 48328172 48328262 -107301858 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 953 213 396 0 0 chr4 48328262 48328315 -107301805 - ID SINE ID -148 76 24 5 953 22 0 0 0 chr4 48328478 48328500 -107301620 + AT_rich Low_complexity Low_complexity 1 22 0 5 953 373 253 23 139 chr4 48328764 48328851 -107301269 + L1ME3 LINE L1 5340 5426 -752 5 953 1063 62 14 20 chr4 48328851 48328999 -107301121 + B1_Mus1 SINE Alu 2 148 0 5 953 493 262 44 74 chr4 48328999 48329324 -107300796 + L1ME3 LINE L1 5413 5732 -430 5 953 330 269 39 0 chr4 48329324 48329402 -107300718 - ID4 SINE ID -2 81 1 5 953 442 312 119 62 chr4 48329402 48329775 -107300345 + L1ME3 LINE L1 5733 6139 -23 5 953 299 327 95 32 chr4 48329982 48330140 -107299980 - MER5A DNA MER1_type -20 169 2 5 953 395 328 23 39 chr4 48330583 48330713 -107299407 + B4 SINE B4 165 292 0 5 953 225 344 99 104 chr4 48331232 48331443 -107298677 + MIRc SINE MIR 2 211 -57 5 953 22 0 0 0 chr4 48331730 48331752 -107298368 + AT_rich Low_complexity Low_complexity 1 22 0 5 953 556 75 11 0 chr4 48331914 48332008 -107298112 + L1Md_F3 LINE L1 6490 6584 0 5 953 198 389 26 26 chr4 48332577 48332730 -107297390 + L2 LINE L2 2336 2488 -931 5 953 538 262 48 0 chr4 48332754 48332880 -107297240 - B1F SINE Alu -14 135 4 5 953 864 246 61 5 chr4 48332901 48333044 -107297076 + B3 SINE B2 9 162 -54 5 953 414 0 0 0 chr4 48333044 48333090 -107297030 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 953 864 246 61 5 chr4 48333090 48333142 -107296978 + B3 SINE B2 163 215 -1 5 953 284 304 52 0 chr4 48333163 48333278 -107296842 - L1MB5 LINE L1 -12 6162 6042 5 953 229 350 8 0 chr4 48333412 48333529 -107296591 - L1MB5 LINE L1 -165 6009 5892 5 953 225 315 148 71 chr4 48334935 48335264 -107294856 - L2c LINE L2 -249 3138 2783 5 953 385 238 12 0 chr4 48335925 48336005 -107294115 - ID2 SINE ID 0 83 3 5 953 21 0 0 0 chr4 48336371 48336392 -107293728 + AT_rich Low_complexity Low_complexity 1 21 0 5 953 288 0 0 0 chr4 48336392 48336424 -107293696 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 953 490 220 269 18 chr4 48336873 48337040 -107293080 - B3 SINE B2 -3 213 5 5 953 334 273 29 57 chr4 48337262 48337367 -107292753 + PB1 SINE Alu 1 102 -25 5 953 414 224 0 0 chr4 48337479 48337555 -107292565 + ID4 SINE ID 5 80 -3 5 953 303 28 0 0 chr4 48337556 48337592 -107292528 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 5 953 569 266 22 0 chr4 48337627 48337766 -107292354 - B1_Mur1 SINE Alu -6 143 2 5 953 625 274 95 6 chr4 48337798 48337956 -107292164 - B3A SINE B2 -18 180 9 5 953 254 261 162 17 chr4 48338751 48338868 -107291252 + L1MC4 LINE L1 6702 6835 -1207 5 953 1240 48 0 0 chr4 48339217 48339364 -107290756 + B1_Mus1 SINE Alu 2 148 0 5 953 186 71 0 0 chr4 48339364 48339392 -107290728 + (A)n Simple_repeat Simple_repeat 1 28 0 5 953 1460 148 16 4 chr4 48339579 48339823 -107290297 - Lx4A LINE L1 -1 7057 6811 5 953 233 291 13 0 chr4 48339942 48340021 -107290099 + L1MC4 LINE L1 7319 7398 -563 5 953 376 287 115 68 chr4 48340069 48340469 -107289651 - L1MC4a LINE L1 -1290 6592 6174 5 953 330 269 210 0 chr4 48340511 48340630 -107289490 - L1MC4a LINE L1 -1810 6072 5929 5 953 1227 103 22 0 chr4 48340991 48341176 -107288944 + B2_Mm1a SINE B2 2 190 -3 5 953 284 286 99 93 chr4 48341191 48341353 -107288767 - MLT1L LTR MaLR -445 165 3 5 953 184 231 18 71 chr4 48341634 48341690 -107288430 + L3 LINE CR1 753 805 -3684 5 953 1313 94 5 40 chr4 48341882 48342104 -107288016 - Lx LINE L1 -1 6653 6440 5 953 397 366 109 51 chr4 48342291 48342703 -107287417 - L2a LINE L2 -4 3422 2987 5 953 197 252 100 64 chr4 48342726 48342836 -107287284 - L2a LINE L2 -496 2923 2810 5 953 599 278 25 30 chr4 48342874 48343074 -107287046 + B3 SINE B2 2 200 -16 5 953 2593 63 3 0 chr4 48343128 48343462 -107286658 - Lx3_Mus LINE L1 0 7009 6675 5 953 1406 168 57 4 chr4 48343544 48343789 -107286331 - MTC LTR MaLR -163 258 1 5 953 376 200 93 0 chr4 48343829 48343904 -107286216 + ID4 SINE ID 2 83 0 5 953 727 296 109 50 chr4 48344210 48344641 -107285479 - L1MC5 LINE L1 -562 7399 6971 5 953 219 36 0 0 chr4 48344641 48344669 -107285451 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 953 727 296 109 50 chr4 48344669 48344961 -107285159 - L1MC5 LINE L1 -991 6970 6634 5 953 3342 250 57 28 chr4 48345195 48346284 -107283836 - Lx8 LINE L1 0 7473 6353 5 953 899 169 198 0 chr4 48346480 48346657 -107283463 - B3 SINE B2 -3 213 2 5 953 344 341 109 32 chr4 48346679 48346900 -107283220 + L2a LINE L2 2650 2887 -532 5 953 707 228 118 0 chr4 48346969 48347180 -107282940 + MER2 DNA MER2_type 98 333 -12 5 953 402 347 127 35 chr4 48347238 48347662 -107282458 + L2a LINE L2 2964 3426 0 5 953 292 253 11 16 chr4 48349532 48349639 -107280481 + L1M2 LINE L1 5683 5785 -518 5 953 198 91 0 0 chr4 48349640 48349673 -107280447 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 953 1201 61 0 0 chr4 48349740 48349888 -107280232 + B1_Mus1 SINE Alu 1 148 0 5 953 324 0 0 0 chr4 48349888 48349924 -107280196 + (A)n Simple_repeat Simple_repeat 1 36 0 5 953 1759 78 8 23 chr4 48350159 48350421 -107279699 - Lx LINE L1 0 6654 6397 5 953 342 0 0 0 chr4 48350804 48350842 -107279278 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 953 2532 17 7 0 chr4 48350847 48351138 -107278982 - L1Md_F2 LINE L1 -14 6568 6276 5 953 269 228 35 0 chr4 48351358 48351415 -107278705 + B4 SINE B4 4 62 -230 5 953 230 304 19 10 chr4 48351530 48351633 -107278487 + L1MEf LINE L1 520 623 -5471 5 953 235 264 57 8 chr4 48351739 48351861 -107278259 + L1MEf LINE L1 784 911 -5183 5 953 272 333 85 19 chr4 48351961 48352221 -107277899 + L1MEf LINE L1 970 1246 -4954 5 953 1178 312 45 10 chr4 48352356 48353048 -107277072 + L1M2 LINE L1 4558 5273 -870 5 953 1012 216 31 5 chr4 48353069 48353286 -107276834 - ORR1D2 LTR MaLR -14 356 94 5 953 3400 30 5 0 chr4 48353966 48354360 -107275760 + MTA_Mm LTR MaLR 1 396 0 5 953 5673 205 78 103 chr4 48354701 48356461 -107273659 - Lx6 LINE L1 -10 7450 5735 5 953 10195 156 28 104 chr4 48358158 48358540 -107271580 - L1_Mur3 LINE L1 -138 5742 5358 5 953 1926 62 23 15 chr4 48358540 48358800 -107271320 + L1_Mus1 LINE L1 6305 6566 -1 5 953 10195 156 28 104 chr4 48358800 48359158 -107270962 - L1_Mur3 LINE L1 -523 5357 5049 5 953 1950 185 327 20 chr4 48359158 48359720 -107270400 - RMER19A LTR ERVK -2 735 1 5 953 10195 156 28 104 chr4 48359720 48360825 -107269295 - L1_Mur3 LINE L1 -832 5048 3931 5 953 378 0 0 0 chr4 48360825 48360867 -107269253 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 953 1366 25 0 0 chr4 48360867 48361027 -107269093 - B2_Mm1a SINE B2 -33 160 1 5 953 10195 156 28 104 chr4 48361027 48361488 -107268632 - L1_Mur3 LINE L1 -1950 3930 3462 5 953 1261 222 24 26 chr4 48361509 48361919 -107268201 - Lx5 LINE L1 -2 7048 6547 5 953 232 243 14 0 chr4 48361919 48361989 -107268131 + L1MD LINE L1 5519 5589 -2406 5 953 499 239 102 59 chr4 48362063 48362317 -107267803 + L1MC1 LINE L1 5712 5976 -357 5 953 693 157 33 0 chr4 48362358 48362479 -107267641 + B1_Mus2 SINE Alu 22 146 -1 5 953 284 280 50 0 chr4 48362554 48362654 -107267466 + L1MC1 LINE L1 6069 6173 -160 5 953 1848 153 82 5 chr4 48362736 48363150 -107266970 - L1_Mur3 LINE L1 -2409 3471 3026 5 953 1285 236 105 3 chr4 48363150 48363473 -107266647 - MTD LTR MaLR -63 356 1 5 953 234 360 10 5 chr4 48363666 48363864 -107266256 - L1M5 LINE L1 -503 5659 5461 5 953 22 0 0 0 chr4 48363879 48363901 -107266219 + AT_rich Low_complexity Low_complexity 1 22 0 5 953 483 176 69 0 chr4 48363997 48364099 -107266021 - B1_Mur4 SINE Alu -7 143 35 5 953 1063 79 7 7 chr4 48364304 48364444 -107265676 + B1_Mus1 SINE Alu 2 141 -7 5 953 185 234 0 13 chr4 48364455 48364493 -107265627 + GA-rich Low_complexity Low_complexity 2 39 0 5 953 1085 123 6 0 chr4 48364493 48364672 -107265448 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 5 953 185 234 0 13 chr4 48364672 48364711 -107265409 + GA-rich Low_complexity Low_complexity 40 77 0 5 953 183 80 0 0 chr4 48365168 48365193 -107264927 + (A)n Simple_repeat Simple_repeat 1 25 0 5 953 386 306 31 47 chr4 48365253 48365380 -107264740 + ID_B1 SINE B4 87 211 -13 6 953 272 120 0 20 chr4 48365387 48365438 -107264682 + (TAA)n Simple_repeat Simple_repeat 1 50 0 6 953 297 151 0 0 chr4 48365468 48365521 -107264599 + GA-rich Low_complexity Low_complexity 3 55 0 6 954 24 0 0 0 chr4 48365587 48365611 -107264509 + AT_rich Low_complexity Low_complexity 1 24 0 6 954 904 288 147 25 chr4 48365686 48366314 -107263806 - L1ME1 LINE L1 -15 6337 5634 6 954 381 334 48 26 chr4 48366366 48366695 -107263425 - L1ME1 LINE L1 -1827 4492 4157 6 954 364 312 193 19 chr4 48367009 48367350 -107262770 - L1ME1 LINE L1 -4915 1500 1041 6 954 204 194 0 0 chr4 48367370 48367406 -107262714 + CT-rich Low_complexity Low_complexity 2 37 0 6 954 528 247 16 134 chr4 48367415 48367602 -107262518 - B4 SINE B4 0 292 128 6 954 380 310 122 34 chr4 48368566 48368803 -107261317 - LTR40a LTR ERVL -180 339 82 6 954 587 177 144 15 chr4 48369342 48369474 -107260646 + B1_Mur1 SINE Alu 1 149 0 6 954 246 81 0 0 chr4 48369508 48369545 -107260575 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 954 569 286 106 61 chr4 48370969 48371233 -107258887 + B4A SINE B4 6 281 -11 6 954 234 0 0 0 chr4 48371929 48371955 -107258165 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 954 191 103 26 0 chr4 48372138 48372177 -107257943 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 954 1624 31 5 0 chr4 48373386 48373578 -107256542 - B2_Mm1t SINE B2 0 193 1 6 954 433 308 165 40 chr4 48373970 48374474 -107255646 - L1MC4 LINE L1 -13 8029 7463 6 954 846 159 0 7 chr4 48374499 48374638 -107255482 - B1_Mus1 SINE Alu -9 139 2 6 954 1014 241 9 0 chr4 48374650 48374862 -107255258 - B3 SINE B2 -2 214 1 6 954 1415 185 59 3 chr4 48375149 48375453 -107254667 - Lx5 LINE L1 -2 7048 6728 6 954 286 289 26 0 chr4 48375502 48375578 -107254542 + ID4 SINE ID 3 80 -3 6 954 2622 223 40 97 chr4 48376137 48376985 -107253135 - Lx7 LINE L1 -4 7692 6893 6 954 422 239 50 64 chr4 48377021 48377284 -107252836 - RMER17C LTR ERVK -519 439 95 6 954 471 155 68 0 chr4 48377286 48377350 -107252770 - Lx6 LINE L1 -647 6813 6745 6 954 258 32 0 0 chr4 48377350 48377381 -107252739 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 954 471 155 68 0 chr4 48377381 48377419 -107252701 - Lx6 LINE L1 -716 6744 6705 6 954 12279 153 39 30 chr4 48377411 48381039 -107249081 - L1_Mur3 LINE L1 -2145 3735 65 6 954 442 273 233 68 chr4 48381367 48381616 -107248504 + B4A SINE B4 2 291 -1 6 954 425 50 17 0 chr4 48381631 48381691 -107248429 + (CATA)n Simple_repeat Simple_repeat 2 62 0 6 954 699 259 40 29 chr4 48382304 48382479 -107247641 + B3A SINE B2 6 182 -16 6 954 1213 261 44 87 chr4 48382528 48382762 -107247358 + L1_Rod LINE L1 5310 5526 -321 6 954 483 254 88 57 chr4 48382762 48382954 -107247166 + B3A SINE B2 1 198 0 6 954 1213 261 44 87 chr4 48382954 48383268 -107246852 + L1_Rod LINE L1 5527 5834 -13 6 954 459 0 0 0 chr4 48383282 48383333 -107246787 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 954 195 69 0 0 chr4 48384499 48384528 -107245592 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 954 945 298 98 14 chr4 48384877 48385234 -107244886 - LTR40c LTR ERVL -5 460 74 6 954 275 342 71 32 chr4 48385239 48385393 -107244727 - HERVL40-int LTR ERVL -204 5326 5167 6 954 232 308 0 0 chr4 48385974 48386026 -107244094 + RSINE1 SINE B4 95 146 -19 6 954 640 248 0 16 chr4 48386016 48386143 -107243977 - RSINE1 SINE B4 -36 129 5 6 954 357 340 30 10 chr4 48386326 48386528 -107243592 - HERVL40-int LTR ERVL -1198 4332 4127 6 954 840 351 36 18 chr4 48386958 48387396 -107242724 - HERVL40-int LTR ERVL -1880 3650 3205 6 954 5143 66 1 6 chr4 48387461 48388131 -107241989 - L1Md_F2 LINE L1 -2 6580 5914 6 954 772 60 0 41 chr4 48388132 48388253 -107241867 + L1_Mm LINE L1 4987 5102 -781 6 954 328 312 122 24 chr4 48388529 48388693 -107241427 - HERVL40-int LTR ERVL -4389 1141 962 6 954 934 318 64 16 chr4 48388972 48389349 -107240771 - LTR40c LTR ERVL -7 458 64 6 954 511 265 2 8 chr4 48390492 48390616 -107239504 + B1F1 SINE Alu 13 137 -12 6 954 1330 287 88 5 chr4 48390724 48391144 -107238976 - Lx8 LINE L1 -254 7219 6765 6 954 521 269 63 6 chr4 48391484 48391715 -107238405 + L1MD LINE L1 5320 5575 -2420 6 954 1309 129 45 0 chr4 48391871 48392095 -107238025 + ORR1B2 LTR MaLR 1 234 -133 6 954 3658 90 136 126 chr4 48392153 48392901 -107237219 - RMER6A LTR ERVK 0 756 1 6 954 270 273 148 22 chr4 48395291 48395426 -107234694 - MIRb SINE MIR -74 194 43 6 954 240 362 184 0 chr4 48395654 48395828 -107234292 + MIRb SINE MIR 54 259 -9 6 954 452 86 0 14 chr4 48396121 48396192 -107233928 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 954 669 245 37 6 chr4 48396235 48396399 -107233721 - B3A SINE B2 -28 170 2 6 954 1402 72 11 0 chr4 48396647 48396828 -107233292 + B2_Mm1t SINE B2 1 183 -10 6 954 372 221 163 8 chr4 48397034 48397157 -107232963 + B3A SINE B2 2 143 -55 6 954 376 262 89 39 chr4 48397220 48397399 -107232721 - Charlie10 DNA MER1_type -353 2469 2282 6 954 273 355 43 34 chr4 48397525 48397758 -107232362 - Charlie10 DNA MER1_type -703 2119 1885 6 954 1260 111 0 0 chr4 48398397 48398772 -107231348 + (TG)n Simple_repeat Simple_repeat 1 375 0 6 954 512 308 20 15 chr4 48398832 48399030 -107231090 - B4A SINE B4 -23 269 71 6 954 333 182 0 13 chr4 48399176 48399254 -107230866 + MLT1A1 LTR MaLR 332 408 0 6 954 282 200 39 91 chr4 48399495 48399572 -107230548 + RLTR25A LTR ERVK 11 83 -1020 6 954 625 264 94 53 chr4 48399657 48399901 -107230219 - B4A SINE B4 -1 291 38 6 954 1493 139 54 4 chr4 48399902 48400161 -107229959 - ORR1C1 LTR MaLR 0 378 107 6 954 1719 158 76 38 chr4 48400177 48400572 -107229548 - ORR1C1-int LTR MaLR 0 1509 1100 6 954 415 267 107 51 chr4 48400739 48400936 -107229184 - ID_B1 SINE B4 -14 210 3 6 954 233 288 53 40 chr4 48401147 48401299 -107228821 - L1MEg LINE L1 -4770 1314 1161 6 954 388 242 89 83 chr4 48401519 48401699 -107228421 + RMER30 DNA MER1_type 5 185 -17 6 954 385 368 172 8 chr4 48401719 48401963 -107228157 - LTR16A LTR ERVL -167 284 1 6 954 276 77 0 0 chr4 48404663 48404702 -107225418 + (CTGTG)n Simple_repeat Simple_repeat 2 40 0 6 954 303 256 179 16 chr4 48404706 48404829 -107225291 - B1F SINE Alu -6 143 1 6 954 306 164 0 0 chr4 48405321 48405376 -107224744 + CT-rich Low_complexity Low_complexity 3 57 0 6 954 241 274 41 31 chr4 48405592 48405690 -107224430 - L1MD2 LINE L1 -11 6348 6250 6 954 267 220 0 0 chr4 48406023 48406082 -107224038 + MIRc SINE MIR 78 136 -132 6 954 1674 32 0 0 chr4 48406793 48406982 -107223138 - B2_Mm1t SINE B2 -3 190 2 6 954 818 236 80 0 chr4 48407600 48407799 -107222321 - B3 SINE B2 0 216 2 6 954 228 182 42 83 chr4 48407955 48408027 -107222093 + ID2 SINE ID 5 73 -10 6 954 23 0 0 0 chr4 48408435 48408458 -107221662 + AT_rich Low_complexity Low_complexity 1 23 0 6 954 711 287 119 10 chr4 48408547 48408850 -107221270 - Lx8 LINE L1 -162 7311 6976 6 954 24 0 0 0 chr4 48409559 48409583 -107220537 + AT_rich Low_complexity Low_complexity 1 24 0 6 954 274 322 213 0 chr4 48409611 48409850 -107220270 + B4A SINE B4 1 290 -2 6 954 273 289 12 36 chr4 48411416 48411534 -107218586 - MIR SINE MIR -48 220 108 6 954 1203 71 0 5 chr4 48411752 48411964 -107218156 + (TG)n Simple_repeat Simple_repeat 1 211 0 6 954 849 312 113 27 chr4 48412522 48413288 -107216832 - L1M5 LINE L1 -2210 3936 3089 6 954 435 276 8 17 chr4 48413310 48413428 -107216692 - ID_B1 SINE B4 -7 217 101 6 954 298 233 111 46 chr4 48413445 48413553 -107216567 - B1F1 SINE Alu 0 149 35 6 954 424 266 277 62 chr4 48413810 48413961 -107216159 - MLT1D LTR MaLR -3 502 318 6 954 243 0 0 0 chr4 48413961 48413988 -107216132 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 954 424 266 277 62 chr4 48413988 48414240 -107215880 - MLT1D LTR MaLR -188 317 12 6 954 323 346 50 36 chr4 48414243 48414462 -107215658 - L1M5 LINE L1 -3394 2752 2531 6 954 23 54 0 0 chr4 48414462 48414499 -107215621 + AT_rich Low_complexity Low_complexity 1 37 0 6 954 255 175 0 0 chr4 48414763 48414803 -107215317 - RSINE1 SINE B4 -98 67 28 6 954 357 318 86 45 chr4 48414811 48414849 -107215271 - L1MC4 LINE L1 -460 7582 7548 6 954 1420 211 144 136 chr4 48414849 48415377 -107214743 - MT2A LTR ERVL -1 532 1 6 954 357 318 86 45 chr4 48415377 48415582 -107214538 - L1MC4 LINE L1 -495 7547 7329 6 954 395 283 115 7 chr4 48416635 48416774 -107213346 + RSINE1 SINE B4 4 157 -8 6 954 420 20 0 0 chr4 48416778 48416827 -107213293 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 954 240 363 44 0 chr4 48417740 48417853 -107212267 + MIR3 SINE MIR 54 171 -37 6 954 1415 58 26 26 chr4 48418838 48418870 -107211250 - B2_Mm1t SINE B2 0 193 161 6 954 423 0 0 0 chr4 48418870 48418917 -107211203 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 954 1415 58 26 26 chr4 48418917 48419077 -107211043 - B2_Mm1t SINE B2 -33 160 1 6 954 1462 102 26 137 chr4 48419186 48419266 -107210854 - ORR1A2 LTR MaLR 0 327 287 6 954 959 60 111 15 chr4 48419266 48419401 -107210719 - B1_Mus1 SINE Alu 0 148 1 6 954 1462 102 26 137 chr4 48419401 48419627 -107210493 - ORR1A2 LTR MaLR -41 286 55 6 954 1331 173 4 4 chr4 48419938 48420164 -107209956 + URR1A DNA MER1_type 1 226 0 6 954 300 140 47 0 chr4 48420297 48420378 -107209742 - B1_Mus1 SINE Alu -18 130 39 6 954 705 61 0 0 chr4 48420895 48420994 -107209126 + (TG)n Simple_repeat Simple_repeat 1 99 0 6 954 358 169 14 0 chr4 48421050 48421121 -107208999 - B1_Mur2 SINE Alu -44 105 34 6 954 345 294 146 7 chr4 48421259 48421403 -107208717 - Tigger7 DNA MER2_type -2082 409 246 6 954 309 276 86 0 chr4 48421398 48421503 -107208617 - Tigger7 DNA MER2_type -2348 143 30 6 954 216 0 0 0 chr4 48422254 48422278 -107207842 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 6 954 23 33 0 0 chr4 48423634 48423664 -107206456 + AT_rich Low_complexity Low_complexity 1 30 0 6 954 800 190 28 22 chr4 48424171 48424349 -107205771 - B3A SINE B2 -18 180 2 6 954 264 152 22 0 chr4 48424807 48424853 -107205267 + MIR3 SINE MIR 151 197 -11 6 954 249 346 0 38 chr4 48425370 48425475 -107204645 + L2c LINE L2 3268 3368 -19 6 954 1518 68 16 0 chr4 48425556 48425747 -107204373 + B2_Mm2 SINE B2 2 195 0 7 954 482 261 19 31 chr4 48425788 48425950 -107204170 - RSINE1 SINE B4 -1 164 5 7 954 488 287 114 30 chr4 48426104 48426341 -107203779 - ORR1E LTR MaLR -1 358 102 7 954 402 312 89 5 chr4 48429152 48429355 -107200765 - L1MDa LINE L1 -4149 2484 2265 7 954 421 282 9 9 chr4 48429404 48429515 -107200605 + B3A SINE B2 75 185 -13 7 954 357 289 42 48 chr4 48429598 48429765 -107200355 - L1MDa LINE L1 -4462 2171 2006 7 954 268 286 43 11 chr4 48429867 48429959 -107200161 - MLT1H2-int LTR MaLR -21 1388 1294 7 954 641 258 173 33 chr4 48430194 48430495 -107199625 - MLT1H2-int LTR MaLR -476 933 591 7 954 21 36 0 0 chr4 48430756 48430784 -107199336 + AT_rich Low_complexity Low_complexity 1 28 0 7 954 207 0 0 0 chr4 48430846 48430869 -107199251 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 954 465 19 0 0 chr4 48430869 48430922 -107199198 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 954 270 237 17 0 chr4 48430923 48430982 -107199138 - RSINE1 SINE B4 -28 137 78 7 954 462 279 59 92 chr4 48431189 48431269 -107198851 - MLT1H2-int LTR MaLR -1095 314 236 7 954 492 18 0 0 chr4 48431269 48431326 -107198794 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 954 462 279 59 92 chr4 48431326 48431342 -107198778 - MLT1H2-int LTR MaLR -1174 235 228 7 954 1200 68 0 0 chr4 48431342 48431489 -107198631 - B1_Mus2 SINE Alu 0 147 1 7 954 462 279 59 92 chr4 48431489 48431663 -107198457 - MLT1H2-int LTR MaLR -1182 227 52 7 954 247 273 189 70 chr4 48431723 48431924 -107198196 - MLT1H2 LTR MaLR -20 469 245 7 954 384 185 116 17 chr4 48432588 48432705 -107197415 - ORR1D1 LTR MaLR -31 343 221 7 954 1137 94 0 0 chr4 48432705 48432971 -107197149 + (CAGG)n Simple_repeat Simple_repeat 1 266 0 7 954 660 195 140 37 chr4 48432971 48433137 -107196983 - ORR1D1 LTR MaLR -139 220 1 7 954 299 300 72 9 chr4 48433797 48433908 -107196212 - L1MEd LINE L1 -5612 507 390 7 954 198 0 0 0 chr4 48435450 48435472 -107194648 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 954 476 293 0 0 chr4 48435473 48435589 -107194531 - RSINE1 SINE B4 -48 117 2 7 954 235 285 75 23 chr4 48436379 48436512 -107193608 - MIR SINE MIR -9 253 114 7 954 268 240 41 20 chr4 48437310 48437408 -107192712 - B4A SINE B4 -191 101 2 7 954 207 0 0 0 chr4 48439776 48439799 -107190321 + (A)n Simple_repeat Simple_repeat 1 23 0 7 954 411 198 82 10 chr4 48441983 48442080 -107188040 + PB1D10 SINE Alu 14 117 0 7 954 1357 166 147 12 chr4 48444029 48444335 -107185785 + Lx4A LINE L1 6712 7058 0 7 954 348 286 55 95 chr4 48444452 48444741 -107185379 + ORR1E LTR MaLR 9 352 -7 7 954 391 66 8 0 chr4 48445459 48445522 -107184598 + B1_Mm SINE Alu 83 149 0 7 954 464 184 10 0 chr4 48445757 48445855 -107184265 + GA-rich Low_complexity Low_complexity 3 101 0 7 954 437 260 48 30 chr4 48446291 48446414 -107183706 + B1F SINE Alu 2 120 0 7 954 1051 134 16 25 chr4 48446986 48447227 -107182893 + Lx LINE L1 6314 6584 -52 7 954 1175 61 0 13 chr4 48447341 48447490 -107182630 + B1_Mus1 SINE Alu 2 148 0 7 954 21 0 0 0 chr4 48447557 48447578 -107182542 + AT_rich Low_complexity Low_complexity 1 21 0 7 954 203 179 0 0 chr4 48447603 48447642 -107182478 + A-rich Low_complexity Low_complexity 1 39 0 7 954 742 132 0 0 chr4 48448988 48449094 -107181026 - B1_Mus1 SINE Alu -41 107 2 7 954 411 229 37 87 chr4 48449094 48449148 -107180972 - MT2B LTR ERVL -446 155 97 7 954 6560 181 55 26 chr4 48449925 48450493 -107179627 + L1_Mur3 LINE L1 892 1497 -4380 7 954 1109 68 0 14 chr4 48450493 48450641 -107179479 + B1_Mus1 SINE Alu 1 146 -2 7 954 6560 164 58 55 chr4 48450641 48452035 -107178085 + L1_Mur3 LINE L1 1498 2878 -2999 7 954 2741 158 238 5 chr4 48452593 48453190 -107176930 + RMER19A LTR ERVK 1 736 -1 7 954 329 247 14 0 chr4 48453890 48453963 -107176157 - MER58C DNA MER1_type -14 201 128 7 954 543 216 147 0 chr4 48453988 48454104 -107176016 + B1_Mus2 SINE Alu 4 136 -11 7 954 3069 45 39 5 chr4 48454116 48454499 -107175621 + MTA_Mm LTR MaLR 1 396 0 7 954 297 75 0 0 chr4 48455002 48455042 -107175078 + (A)n Simple_repeat Simple_repeat 1 40 0 7 954 1150 35 0 65 chr4 48455046 48455201 -107174919 + B1_Mm SINE Alu 2 146 -1 7 954 297 221 0 61 chr4 48455223 48455305 -107174815 + L1_Mur1 LINE L1 755 831 -6151 7 954 180 0 0 0 chr4 48455318 48455338 -107174782 + (CCA)n Simple_repeat Simple_repeat 1 20 0 7 954 18851 126 38 12 chr4 48455459 48459332 -107170788 + Lx3B LINE L1 751 4726 -1160 7 954 3679 109 66 171 chr4 48459334 48459519 -107170601 + Lx3_Mus LINE L1 6120 6308 -701 7 954 451 193 126 42 chr4 48459519 48459532 -107170588 + B4 SINE B4 70 92 -200 7 954 818 79 53 0 chr4 48459532 48459646 -107170474 + B1_Mus1 SINE Alu 1 120 -28 7 954 3679 109 66 171 chr4 48459646 48460328 -107169792 + Lx3_Mus LINE L1 6309 7009 0 7 954 7525 117 38 14 chr4 48460339 48461895 -107168225 + Lx3B LINE L1 5359 6948 -25 7 954 198 0 0 0 chr4 48461895 48461917 -107168203 + (GGA)n Simple_repeat Simple_repeat 1 22 0 7 954 207 204 45 0 chr4 48461953 48461997 -107168123 + MER5A DNA MER1_type 86 131 -58 7 954 339 25 0 0 chr4 48462328 48462368 -107167752 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 954 1074 67 0 7 chr4 48462471 48462607 -107167513 + B1_Mus1 SINE Alu 3 137 -11 7 954 432 239 163 22 chr4 48463109 48463293 -107166827 + B3 SINE B2 2 211 -5 7 954 359 259 25 0 chr4 48463456 48463537 -107166583 + B3 SINE B2 1 83 -133 7 954 1117 56 7 0 chr4 48463758 48463902 -107166218 + B2_Mm1t SINE B2 37 181 -12 7 954 180 0 0 0 chr4 48463902 48463922 -107166198 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 954 1165 42 28 0 chr4 48464068 48464210 -107165910 + B1_Mus1 SINE Alu 1 146 -2 7 954 231 91 0 0 chr4 48464468 48464501 -107165619 + B1_Mur4 SINE Alu 112 144 -6 7 954 190 0 32 32 chr4 48464502 48464533 -107165587 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 7 954 576 153 20 0 chr4 48465237 48465335 -107164785 + PB1D9 SINE Alu 13 112 -8 7 954 368 188 256 0 chr4 48465238 48465355 -107164765 + B4A SINE B4 99 245 -47 7 954 399 260 54 27 chr4 48465930 48466097 -107164023 + B3 SINE B2 34 193 0 7 954 328 315 173 0 chr4 48466574 48466701 -107163419 + B1F1 SINE Alu 1 149 0 7 954 229 182 200 0 chr4 48467365 48467420 -107162700 - ID4_ SINE ID -17 66 1 7 954 681 168 88 0 chr4 48467994 48468119 -107162001 + B1_Mur3 SINE Alu 1 136 -13 7 954 546 151 7 125 chr4 48468205 48468341 -107161779 + PB1D9 SINE Alu 1 120 0 7 954 189 147 0 0 chr4 48468344 48468378 -107161742 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 954 489 284 25 33 chr4 48468523 48468763 -107161357 + L1MB2 LINE L1 5600 5837 -334 7 954 251 255 119 30 chr4 48468899 48469000 -107161120 + PB1D9 SINE Alu 5 114 -6 7 954 234 0 0 0 chr4 48469093 48469119 -107161001 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 954 666 207 7 22 chr4 48469381 48469519 -107160601 + B1_Mur4 SINE Alu 15 150 0 7 954 1109 48 7 52 chr4 48469972 48470126 -107159994 + B1_Mus1 SINE Alu 2 148 0 7 954 428 240 25 0 chr4 48470340 48470461 -107159659 + L1MB7 LINE L1 5778 5901 -277 7 954 533 317 20 24 chr4 48470643 48470895 -107159225 + L1MB7 LINE L1 5926 6176 -8 7 954 264 304 63 0 chr4 48471142 48471221 -107158899 + PB1D9 SINE Alu 34 117 -3 7 954 297 281 205 8 chr4 48473437 48473453 -107156667 + ID_B1 SINE B4 76 151 -73 7 954 399 215 213 11 chr4 48473453 48473547 -107156573 + B1_Mur1 SINE Alu 12 124 -25 7 954 297 281 205 8 chr4 48473547 48473559 -107156561 + ID_B1 SINE B4 152 221 -3 7 954 1935 182 96 136 chr4 48473591 48473718 -107156402 + RMER1A Other Other 405 524 -506 7 954 1220 41 0 7 chr4 48473718 48473865 -107156255 + B1_Mm SINE Alu 2 147 0 7 954 2209 147 80 48 chr4 48473865 48474384 -107155736 + RMER1B Other Other 525 1062 -4 7 954 620 228 94 14 chr4 48474569 48474707 -107155413 - RSINE1 SINE B4 0 165 17 7 954 270 246 0 17 chr4 48474710 48474768 -107155352 - B4A SINE B4 -63 229 173 7 954 216 163 0 0 chr4 48475470 48475513 -107154607 + CT-rich Low_complexity Low_complexity 4 46 0 7 954 759 289 72 69 chr4 48476431 48476721 -107153399 - B4 SINE B4 0 292 2 7 954 279 359 0 80 chr4 48476721 48476810 -107153310 - B1_Mus2 SINE Alu -37 110 30 7 954 1598 206 78 19 chr4 48476828 48477189 -107152931 + MTC LTR MaLR 39 420 -1 7 954 513 45 0 0 chr4 48477612 48477679 -107152441 - B1_Mus2 SINE Alu -2 145 79 7 954 200 204 0 0 chr4 48477776 48477825 -107152295 + A-rich Low_complexity Low_complexity 1 49 0 7 954 227 285 46 99 chr4 48478122 48478274 -107151846 + RLTR21 LTR ERVK 1081 1224 -348 7 954 437 308 165 0 chr4 48478395 48478577 -107151543 + B3 SINE B2 2 213 -3 7 954 225 233 23 0 chr4 48478596 48478639 -107151481 - B3A SINE B2 -153 45 2 7 954 622 272 87 9 chr4 48478973 48479203 -107150917 - Tigger5 DNA MER2_type -23 2383 2136 7 954 1050 83 21 0 chr4 48479368 48479513 -107150607 + B1_Mus1 SINE Alu 1 148 0 7 954 647 228 13 76 chr4 48480043 48480200 -107149920 - B1F2 SINE Alu -1 148 2 7 954 596 205 6 90 chr4 48483237 48483258 -107146862 + ID_B1 SINE B4 73 224 0 7 954 1020 92 0 21 chr4 48483258 48483403 -107146717 + B1_Mus1 SINE Alu 7 148 0 7 954 195 42 0 0 chr4 48484464 48484488 -107145632 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 7 954 25 0 0 0 chr4 48487156 48487181 -107142939 + AT_rich Low_complexity Low_complexity 1 25 0 7 954 595 336 105 55 chr4 48487189 48488181 -107141939 + L2a LINE L2 2353 3409 -17 7 954 363 44 0 0 chr4 48488620 48488665 -107141455 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 954 401 233 47 28 chr4 48488728 48488834 -107141286 + MTEb LTR MaLR 272 379 0 7 954 473 298 42 20 chr4 48489168 48489327 -107140793 - MLT1B LTR MaLR -38 467 287 7 954 488 290 34 56 chr4 48489936 48490115 -107140005 - MLT1B LTR MaLR -202 188 14 7 954 637 241 89 51 chr4 48490661 48490875 -107139245 - LTR50 LTR ERVL -572 223 2 7 954 231 61 0 0 chr4 48490967 48491000 -107139120 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 954 232 333 12 0 chr4 48491070 48491151 -107138969 + ID4 SINE ID 1 82 -1 8 954 1068 298 128 27 chr4 48491280 48491374 -107138746 - L1_Mur3 LINE L1 -3274 2606 2515 8 954 203 0 0 36 chr4 48491374 48491402 -107138718 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 8 954 1068 298 128 27 chr4 48491402 48492004 -107138116 - L1_Mur3 LINE L1 -3366 2514 1840 8 954 804 203 123 15 chr4 48492023 48492218 -107137902 + B3 SINE B2 1 216 0 8 954 1082 91 0 14 chr4 48492642 48492780 -107137340 + B1_Mus1 SINE Alu 1 138 -10 8 954 234 0 0 0 chr4 48492780 48492806 -107137314 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 8 954 310 323 0 30 chr4 48492970 48493069 -107137051 + MLT1D LTR MaLR 402 497 -8 8 954 387 205 75 25 chr4 48493178 48493258 -107136862 + B1F SINE Alu 65 148 -1 8 954 1454 49 16 16 chr4 48493277 48493463 -107136657 + B2_Mm2 SINE B2 2 187 -8 8 954 265 300 121 11 chr4 48494066 48494157 -107135963 + PB1D10 SINE Alu 1 101 -16 8 954 317 214 0 14 chr4 48494177 48494248 -107135872 + ID4 SINE ID 1 70 -13 8 954 243 0 0 0 chr4 48494689 48494716 -107135404 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 954 1189 61 0 0 chr4 48494728 48494875 -107135245 + B1_Mus1 SINE Alu 2 148 0 8 954 193 49 47 47 chr4 48495150 48495193 -107134927 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 8 954 189 0 0 0 chr4 48495531 48495552 -107134568 + (CACAG)n Simple_repeat Simple_repeat 5 25 0 8 954 323 101 101 0 chr4 48496377 48496536 -107133584 + (TG)n Simple_repeat Simple_repeat 1 175 0 8 955 255 114 0 0 chr4 48496640 48496684 -107133436 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 8 955 225 139 0 44 chr4 48496695 48496740 -107133380 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 8 955 425 218 13 0 chr4 48496910 48496988 -107133132 + ID4_ SINE ID 1 79 -4 8 955 588 84 0 0 chr4 48496995 48497078 -107133042 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 8 955 1519 267 51 62 chr4 48497212 48497856 -107132264 + L1MB2 LINE L1 5381 6017 -154 8 955 276 100 0 0 chr4 48497863 48497903 -107132217 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 8 955 313 264 48 0 chr4 48497971 48498096 -107132024 + L1MB2 LINE L1 6024 6154 -17 8 955 658 272 41 123 chr4 48498142 48498460 -107131660 + B4A SINE B4 1 292 0 8 955 2851 79 37 0 chr4 48498600 48499003 -107131117 + BGLII_Mus LTR ERVK 1 418 -4 8 955 824 184 160 16 chr4 48499614 48499802 -107130318 + B3 SINE B2 1 215 -1 8 955 255 349 37 28 chr4 48500136 48500245 -107129875 - PB1D10 SINE Alu -7 110 1 1 955 335 233 0 0 chr4 48500289 48500362 -107129758 + B3 SINE B2 79 151 -65 2 955 2136 79 12 16 chr4 48500534 48500856 -107129264 + ORR1A4 LTR MaLR 1 321 -8 3 955 23 68 0 0 chr4 48501545 48501589 -107128531 + AT_rich Low_complexity Low_complexity 1 44 0 4 955 375 89 0 0 chr4 48501594 48501650 -107128470 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 955 1064 231 9 19 chr4 48501654 48501870 -107128250 - ID_B1 SINE B4 -9 215 2 6 955 355 310 57 72 chr4 48502306 48502570 -107127550 + ORR1E LTR MaLR 95 354 -5 7 955 1417 216 90 0 chr4 48502657 48502702 -107127418 + MTD LTR MaLR 46 102 -317 8 955 1069 62 0 0 chr4 48502702 48502832 -107127288 - B1_Mm SINE Alu -16 131 2 9 955 1417 216 90 0 chr4 48502832 48503129 -107126991 + MTD LTR MaLR 103 418 -1 8 955 1748 185 42 73 chr4 48503226 48503416 -107126704 - ORR1D1 LTR MaLR -2 372 183 1 955 333 0 0 0 chr4 48503416 48503453 -107126667 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 955 438 20 0 0 chr4 48503453 48503503 -107126617 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 955 1748 185 42 73 chr4 48503503 48503695 -107126425 - ORR1D1 LTR MaLR -192 182 2 1 955 608 226 0 0 chr4 48503730 48503845 -107126275 - PB1D10 SINE Alu -2 115 1 1 955 2620 170 65 17 chr4 48503904 48504177 -107125943 - RLTR12A LTR ERVK -4 564 258 1 955 1536 151 8 124 chr4 48504177 48504541 -107125579 - RLTRETN_Mm LTR ERVK 0 322 1 1 955 2620 170 65 17 chr4 48504541 48504805 -107125315 - RLTR12A LTR ERVK -311 257 1 1 955 262 385 10 0 chr4 48504817 48504921 -107125199 - MIR SINE MIR -146 116 12 1 955 284 250 67 11 chr4 48505661 48505750 -107124370 - MER57A-int LTR ERV1 -295 5892 5799 1 955 288 320 45 34 chr4 48506089 48506220 -107123900 + L1MD2 LINE L1 5768 5903 -456 1 955 5686 103 16 39 chr4 48506220 48507127 -107122993 - RMER17D LTR ERVK -2 887 1 1 955 288 320 45 34 chr4 48507127 48507173 -107122947 + L1MD2 LINE L1 5904 5947 -412 1 955 591 301 90 50 chr4 48507196 48507546 -107122574 + MLT2B5 LTR ERVL 136 504 -97 2 955 315 0 0 0 chr4 48507564 48507599 -107122521 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 2 955 1338 231 55 104 chr4 48507826 48507922 -107122198 - RLTR16 LTR ERVK 0 505 400 2 955 270 0 0 0 chr4 48507922 48507952 -107122168 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 955 1338 231 55 104 chr4 48507952 48508242 -107121878 - RLTR16 LTR ERVK -106 399 137 2 955 216 0 0 0 chr4 48508242 48508266 -107121854 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 955 1331 74 11 0 chr4 48508266 48508442 -107121678 - B2_Mm1t SINE B2 -15 178 1 2 955 1338 231 55 104 chr4 48508442 48508583 -107121537 - RLTR16 LTR ERVK -369 136 3 2 955 242 140 0 57 chr4 48508728 48508781 -107121339 - B1_Mur4 SINE Alu 0 150 101 2 955 310 169 0 71 chr4 48508793 48508863 -107121257 + RLTR20D LTR ERVK 191 255 -313 2 955 442 247 0 0 chr4 48508863 48508952 -107121168 - B1_Mus1 SINE Alu -58 90 2 2 955 316 271 62 69 chr4 48509092 48509236 -107120884 - MLT2B2 LTR ERVL -34 521 380 2 955 581 196 180 7 chr4 48509255 48509394 -107120726 + RSINE1 SINE B4 1 163 -2 3 955 1340 69 11 0 chr4 48509408 48509582 -107120538 + B2_Mm1t SINE B2 1 176 -17 3 955 19472 59 2 6 chr4 48509608 48512089 -107118031 + L1Md_F2 LINE L1 3116 5585 -298 3 955 7756 55 11 15 chr4 48512090 48513078 -107117042 + L1Md_F2 LINE L1 5587 6570 -12 3 955 270 0 0 0 chr4 48513086 48513116 -107117004 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 955 1101 79 0 0 chr4 48513120 48513259 -107116861 + B1_Mus2 SINE Alu 1 139 -8 3 955 198 0 0 0 chr4 48513264 48513286 -107116834 + (A)n Simple_repeat Simple_repeat 1 22 0 3 955 25 31 0 0 chr4 48513339 48513371 -107116749 + AT_rich Low_complexity Low_complexity 1 32 0 3 955 247 269 0 0 chr4 48513585 48513637 -107116483 - B3A SINE B2 -88 110 59 3 955 217 250 0 148 chr4 48513907 48514015 -107116105 + MIR3 SINE MIR 74 165 -43 3 955 874 200 29 0 chr4 48514102 48514277 -107115843 - ORR1D1 LTR MaLR 0 374 195 3 955 2216 211 4 177 chr4 48514295 48515034 -107115086 + RMER19C LTR ERVK 1 611 0 4 955 266 190 23 19 chr4 48515056 48515128 -107114992 - ORR1D1 LTR MaLR -302 72 3 3 955 333 279 25 0 chr4 48515221 48515300 -107114820 - B1_Mus2 SINE Alu -65 82 2 4 955 1184 291 99 14 chr4 48515306 48515731 -107114389 - MT2A LTR ERVL -72 461 1 4 955 21 0 0 0 chr4 48515818 48515839 -107114281 + AT_rich Low_complexity Low_complexity 1 21 0 4 955 333 344 74 21 chr4 48516202 48516392 -107113728 - LTR33 LTR ERVL -14 501 302 4 955 241 329 0 0 chr4 48516569 48516639 -107113481 - LTR33 LTR ERVL -434 81 12 4 955 991 129 0 0 chr4 48516729 48516869 -107113251 + B1_Mus1 SINE Alu 3 142 -6 4 955 808 167 230 0 chr4 48516903 48517077 -107113043 + B3 SINE B2 2 215 -1 4 955 209 160 0 39 chr4 48517088 48517140 -107112980 + GA-rich Low_complexity Low_complexity 3 52 0 4 955 910 150 0 28 chr4 48517148 48517292 -107112828 + B1_Mus1 SINE Alu 2 141 -7 4 955 216 0 0 0 chr4 48517294 48517318 -107112802 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 955 513 0 0 0 chr4 48517322 48517379 -107112741 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 5 955 1097 95 0 0 chr4 48517504 48517651 -107112469 + B1_Mm SINE Alu 1 147 0 5 955 2288 167 66 66 chr4 48517786 48518304 -107111816 + RLTR25A LTR ERVK 1 518 -585 5 955 700 189 188 117 chr4 48518232 48518514 -107111606 + ORR1A3-int LTR MaLR 499 800 -1163 5 955 1322 180 59 0 chr4 48518333 48518544 -107111576 + MT2B LTR ERVL 35 259 -342 5 955 467 267 48 0 chr4 48518544 48518649 -107111471 + B1_Mus2 SINE Alu 3 112 -35 5 955 1270 41 0 0 chr4 48518651 48518798 -107111322 + B1_Mus1 SINE Alu 2 148 0 5 955 393 179 0 0 chr4 48518815 48518899 -107111221 + ORR1A3-int LTR MaLR 823 906 -1057 5 955 3272 67 2 2 chr4 48518899 48519320 -107110800 - BGLII LTR ERVK 0 421 1 5 955 3081 213 35 73 chr4 48519322 48520054 -107110066 - RMER3D-int LTR ERVK -1 2841 2127 5 955 1080 74 0 39 chr4 48520054 48520208 -107109912 - B1_Mus1 SINE Alu 0 148 1 5 955 3081 192 19 66 chr4 48520208 48520933 -107109187 - RMER3D-int LTR ERVK -716 2126 1219 5 955 256 33 0 0 chr4 48520926 48520956 -107109164 - MMERGLN-int LTR ERV1 -3034 265 236 5 955 599 216 101 13 chr4 48520980 48521139 -107108981 - MMERGLN-int LTR ERV1 -7253 303 131 5 955 1504 79 48 80 chr4 48521126 48521375 -107108745 - RLTR1B-int LTR ERV1 -3036 263 23 6 955 4161 53 2 8 chr4 48521382 48521897 -107108223 - RLTR1B LTR ERV1 0 512 1 6 955 623 135 294 24 chr4 48521897 48522067 -107108053 - RMER3D-int LTR ERVK -1613 1229 1014 5 955 565 195 134 58 chr4 48522131 48522533 -107107587 - RMER3D-int LTR ERVK -1763 1079 489 5 955 523 121 14 0 chr4 48522548 48522635 -107107485 - RMER3D-int LTR ERVK -2278 564 489 6 955 3288 45 2 5 chr4 48522884 48523281 -107106839 + MTA_Mm LTR MaLR 1 396 0 6 955 2762 78 58 2 chr4 48523441 48523839 -107106281 - BGLII LTR ERVK 0 421 2 6 955 435 97 0 0 chr4 48523843 48523905 -107106215 + ORR1A3-int LTR MaLR 904 965 -998 5 955 616 158 83 148 chr4 48523885 48524115 -107106005 + RLTR25B LTR ERVK 628 842 -186 6 955 275 85 21 0 chr4 48524139 48524186 -107105934 + RLTR25B LTR ERVK 981 1028 0 6 955 624 241 34 40 chr4 48524190 48524367 -107105753 - ID_B1 SINE B4 -25 199 24 6 955 1462 225 68 44 chr4 48524369 48524489 -107105631 + MTD LTR MaLR 1 112 -307 6 955 183 42 0 0 chr4 48524489 48524513 -107105607 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 955 1462 225 68 44 chr4 48524513 48524801 -107105319 + MTD LTR MaLR 113 418 -1 6 955 7090 196 52 44 chr4 48524834 48525848 -107104272 - Lx6 LINE L1 -5 7455 6421 6 955 1711 21 0 0 chr4 48525848 48526040 -107104080 - B2_Mm1a SINE B2 0 193 2 6 955 7090 196 52 44 chr4 48526040 48526492 -107103628 - Lx6 LINE L1 -1040 6420 5977 6 955 1873 114 15 62 chr4 48526493 48526831 -107103289 + RLTRETN_Mm LTR ERVK 1 322 0 7 955 23377 62 10 37 chr4 48526832 48529350 -107100770 + MMETn-int LTR ERVK 2 2443 -2401 7 955 1623 52 0 0 chr4 48529350 48529542 -107100578 + B2_Mm1a SINE B2 2 193 0 7 955 23377 62 10 37 chr4 48529542 48530251 -107099869 + MMETn-int LTR ERVK 2444 3141 -1703 7 955 8495 125 10 31 chr4 48530285 48531673 -107098447 + MMETn-int LTR ERVK 3486 4844 0 7 955 1873 101 12 70 chr4 48531673 48532015 -107098105 + RLTRETN_Mm LTR ERVK 1 322 0 7 955 2570 181 33 26 chr4 48532032 48532608 -107097512 - Lx6 LINE L1 -1494 5966 5385 6 955 817 265 53 45 chr4 48532635 48533087 -107097033 - RLTR11B LTR ERVK -60 467 7 7 955 261 86 0 0 chr4 48533091 48533126 -107096994 - Lx6 LINE L1 -490 5390 5356 6 955 848 68 0 8 chr4 48533126 48533244 -107096876 - ORR1A2 LTR MaLR 0 327 211 7 955 9860 148 25 8 chr4 48533247 48534163 -107095957 - Lx6 LINE L1 -663 5217 4284 6 955 195 42 0 0 chr4 48534163 48534187 -107095933 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 955 9860 148 25 8 chr4 48534187 48534525 -107095595 - Lx6 LINE L1 -1597 4283 3939 6 955 1522 39 33 0 chr4 48534525 48534706 -107095414 - B2_Mm1a SINE B2 -5 188 2 7 955 9860 148 25 8 chr4 48534706 48535162 -107094958 - Lx6 LINE L1 -1942 3938 3476 6 955 1982 172 18 113 chr4 48535212 48535762 -107094358 - Lx6 LINE L1 -4116 1764 1267 6 955 288 284 35 21 chr4 48535845 48535989 -107094131 + RLTR15 LTR ERVK 45 190 -169 7 955 1970 147 36 48 chr4 48536118 48536539 -107093581 - Lx6 LINE L1 -6454 1274 859 6 955 274 225 42 0 chr4 48536564 48536635 -107093485 - Lx6 LINE L1 -7440 288 215 6 955 272 324 134 24 chr4 48536616 48536825 -107093295 - Lx6 LINE L1 -7297 431 200 6 955 556 265 61 43 chr4 48536852 48537132 -107092988 - RLTR15 LTR ERVK -30 329 45 7 955 349 312 8 0 chr4 48537220 48537345 -107092775 - Lx6 LINE L1 -7524 204 79 6 955 441 0 0 0 chr4 48537727 48537776 -107092344 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 955 2147 90 17 67 chr4 48537854 48538200 -107091920 - ORR1A4 LTR MaLR 0 329 1 7 955 198 0 0 0 chr4 48538256 48538278 -107091842 + (A)n Simple_repeat Simple_repeat 1 22 0 8 955 1163 68 7 0 chr4 48538296 48538442 -107091678 - B1_Mus2 SINE Alu 0 147 1 8 955 512 68 14 0 chr4 48538453 48538526 -107091594 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 8 955 817 291 9 5 chr4 48538641 48538852 -107091268 + ID_B1 SINE B4 2 213 -11 8 955 325 256 0 35 chr4 48539004 48539089 -107091031 + ID4 SINE ID 1 82 -1 8 955 1955 114 11 93 chr4 48539241 48539618 -107090502 - ORR1B1 LTR MaLR -8 386 41 8 955 449 224 75 35 chr4 48539957 48540156 -107089964 + L1MB4 LINE L1 5697 5903 -277 8 955 1121 88 0 20 chr4 48540201 48540352 -107089768 + B1_Mus1 SINE Alu 1 148 0 8 955 204 40 0 0 chr4 48540352 48540377 -107089743 + (A)n Simple_repeat Simple_repeat 1 25 0 8 955 759 322 16 16 chr4 48540440 48540752 -107089368 + L1M2 LINE L1 4743 5054 -1089 8 955 1199 196 8 28 chr4 48540752 48540999 -107089121 - MTD LTR MaLR -138 281 40 9 955 2170 62 177 147 chr4 48541009 48541484 -107088636 - RLTR1B LTR ERV1 -23 489 1 9 955 228 23 43 43 chr4 48541506 48541552 -107088568 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 9 955 284 294 130 0 chr4 48541623 48541715 -107088405 + Lx9 LINE L1 5800 5903 -1741 9 955 1190 61 0 0 chr4 48541733 48541880 -107088240 - B1_Mm SINE Alu 0 147 1 9 955 2871 187 194 54 chr4 48541887 48542027 -107088093 - RMER1B Other Other -1 1065 936 9 955 2531 65 9 36 chr4 48542027 48542114 -107088006 + ORR1A2 LTR MaLR 3 88 -239 9 955 261 0 0 0 chr4 48542114 48542143 -107087977 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 9 955 1154 44 0 0 chr4 48542143 48542279 -107087841 - B1_Mus2 SINE Alu -11 136 1 9 955 2531 65 9 36 chr4 48542279 48542524 -107087596 + ORR1A2 LTR MaLR 89 326 -1 9 955 2871 187 194 54 chr4 48542524 48542770 -107087350 - RMER1B Other Other -131 935 702 9 955 1407 70 27 5 chr4 48542770 48542798 -107087322 - B2_Mm1a SINE B2 0 193 161 9 955 186 43 0 0 chr4 48542798 48542821 -107087299 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 955 1407 70 27 5 chr4 48542821 48542980 -107087140 - B2_Mm1a SINE B2 -33 160 2 9 955 2871 225 151 43 chr4 48542980 48543623 -107086497 - RMER1B Other Other -566 776 65 9 955 686 259 20 54 chr4 48543742 48543946 -107086174 + B3A SINE B2 2 198 0 1 955 430 231 129 28 chr4 48543960 48544138 -107085982 + L1MB4 LINE L1 5879 6074 -106 1 955 255 31 0 0 chr4 48545058 48545090 -107085030 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 955 712 302 55 8 chr4 48545116 48545373 -107084747 - B4A SINE B4 -23 269 1 1 955 180 0 0 0 chr4 48545597 48545617 -107084503 + (T)n Simple_repeat Simple_repeat 1 20 0 1 955 873 63 2 1 chr4 48545617 48545753 -107084367 - B1_Mus1 SINE Alu 0 149 13 1 955 333 0 0 0 chr4 48545760 48545797 -107084323 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 955 423 0 0 0 chr4 48545797 48545843 -107084277 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 955 265 293 26 13 chr4 48545843 48545919 -107084201 - ID4_ SINE ID -6 77 1 1 955 633 47 0 0 chr4 48546114 48546200 -107083920 + B1_Mus2 SINE Alu 62 147 0 1 955 228 35 0 0 chr4 48546203 48546232 -107083888 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 955 1021 185 25 81 chr4 48546285 48546520 -107083600 + URR1B DNA MER1_type 1 222 -3 1 955 241 291 48 28 chr4 48546588 48546733 -107083387 - L1M5 LINE L1 -1383 4763 4616 1 955 1618 33 0 0 chr4 48547090 48547274 -107082846 - B2_Mm1a SINE B2 -7 186 3 1 955 3107 72 7 7 chr4 48547306 48547724 -107082396 + L1_Mus3 LINE L1 6208 6625 -13 1 955 1353 80 40 0 chr4 48547724 48547899 -107082221 - B2_Mm2 SINE B2 -13 182 1 1 955 252 0 0 0 chr4 48548182 48548210 -107081910 + (T)n Simple_repeat Simple_repeat 1 28 0 1 955 1164 75 0 0 chr4 48548214 48548361 -107081759 - B1_Mus2 SINE Alu 0 147 1 1 955 1774 249 75 28 chr4 48548382 48548997 -107081123 - Lx9 LINE L1 -3 7641 6998 1 955 249 309 40 40 chr4 48549159 48549260 -107080860 + MLT1M LTR MaLR 94 194 -478 1 955 210 273 0 25 chr4 48549457 48549536 -107080584 + GA-rich Low_complexity Low_complexity 2 78 0 1 955 338 250 48 0 chr4 48549554 48549658 -107080462 + PB1D10 SINE Alu 9 117 0 1 955 22 0 0 0 chr4 48549662 48549684 -107080436 + GC_rich Low_complexity Low_complexity 1 22 0 1 955 2966 76 18 0 chr4 48550660 48551053 -107079067 + MTB LTR MaLR 1 400 0 1 955 1182 62 7 0 chr4 48551275 48551421 -107078699 - B1_Mm SINE Alu 0 147 1 1 955 734 204 7 0 chr4 48551736 48551873 -107078247 + ID_B1 SINE B4 80 217 -7 1 955 858 225 30 41 chr4 48551881 48552150 -107077970 + L1MB5 LINE L1 5595 5860 -314 1 955 307 212 65 71 chr4 48552178 48552301 -107077819 + B1F SINE Alu 3 127 -22 1 955 543 31 0 0 chr4 48552315 48552380 -107077740 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 955 613 255 108 42 chr4 48552393 48552654 -107077466 + L1MB5 LINE L1 5890 6174 0 1 955 225 173 25 76 chr4 48553210 48553329 -107076791 + (CGCGG)n Simple_repeat Simple_repeat 3 115 0 1 955 24 85 0 0 chr4 48553376 48553435 -107076685 + GC_rich Low_complexity Low_complexity 1 59 0 1 955 30 97 0 20 chr4 48553452 48553599 -107076521 + GC_rich Low_complexity Low_complexity 1 144 0 1 955 216 0 0 0 chr4 48555278 48555302 -107074818 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1 955 181 323 94 0 chr4 48558217 48558313 -107071807 - MIR3 SINE MIR -27 181 77 1 955 232 320 13 0 chr4 48558408 48558483 -107071637 + ID4 SINE ID 2 77 -6 1 955 700 212 91 0 chr4 48558518 48558650 -107071470 - B1_Mur1 SINE Alu 0 149 6 1 955 639 268 87 94 chr4 48560496 48560875 -107069245 - MLT1B LTR MaLR -16 374 4 1 955 217 274 0 0 chr4 48561712 48561763 -107068357 + G-rich Low_complexity Low_complexity 4 54 0 1 955 21 0 0 0 chr4 48561815 48561836 -107068284 + GC_rich Low_complexity Low_complexity 1 21 0 1 955 466 254 109 72 chr4 48561931 48562116 -107068004 + MIRb SINE MIR 1 190 -78 1 955 21 0 0 0 chr4 48562968 48562989 -107067131 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 872 92 170 47 chr4 48563095 48563266 -107066854 - B2_Mm1t SINE B2 0 193 2 1 955 180 0 0 0 chr4 48563432 48563452 -107066668 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 955 665 222 54 81 chr4 48564097 48564283 -107065837 - B3A SINE B2 -17 181 1 1 955 261 0 0 0 chr4 48564296 48564325 -107065795 + (A)n Simple_repeat Simple_repeat 1 29 0 1 955 234 128 0 0 chr4 48564352 48564391 -107065729 + (A)n Simple_repeat Simple_repeat 1 39 0 1 955 237 65 0 0 chr4 48564412 48564443 -107065677 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 955 381 251 132 23 chr4 48564545 48564670 -107065450 - B1F SINE Alu -7 140 1 1 955 1140 57 0 0 chr4 48564992 48565132 -107064988 + B1_Mus1 SINE Alu 2 141 -7 1 955 243 0 0 0 chr4 48565136 48565163 -107064957 + (A)n Simple_repeat Simple_repeat 1 27 0 1 955 541 299 46 41 chr4 48566055 48566250 -107063870 + B3A SINE B2 3 198 0 1 955 406 301 180 46 chr4 48566730 48567168 -107062952 - MamRep605 Unknown Unknown -138 738 242 1 955 548 106 0 11 chr4 48567421 48567516 -107062604 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 955 431 243 111 9 chr4 48567517 48567625 -107062495 - RSINE1 SINE B4 -34 131 13 1 955 270 0 0 0 chr4 48567786 48567816 -107062304 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 955 988 110 21 0 chr4 48567838 48567983 -107062137 - B1_Mus1 SINE Alu 0 148 1 1 955 723 264 0 0 chr4 48567990 48568138 -107061982 - B1_Mur1 SINE Alu 0 149 2 1 955 1118 36 7 0 chr4 48568157 48568294 -107061826 + B1_Mm SINE Alu 10 147 0 1 955 310 309 114 7 chr4 48568488 48568628 -107061492 - HAL1-3A_ME LINE L1 -419 2439 2285 1 955 439 271 96 40 chr4 48568799 48568976 -107061144 + MER33 DNA MER1_type 9 195 -129 1 955 210 282 80 53 chr4 48570279 48570354 -107059766 + MIRb SINE MIR 44 120 -148 1 955 444 135 0 0 chr4 48570856 48570930 -107059190 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 955 43 71 0 0 chr4 48570957 48571042 -107059078 + AT_rich Low_complexity Low_complexity 1 85 0 1 955 1150 78 127 0 chr4 48571052 48571218 -107058902 - B2_Mm2 SINE B2 -8 187 1 1 955 1169 57 0 0 chr4 48571229 48571369 -107058751 - B1_Mm SINE Alu -6 141 2 1 955 718 171 217 28 chr4 48571387 48571567 -107058553 - B3 SINE B2 -2 214 1 1 955 226 377 35 62 chr4 48571576 48571689 -107058431 - PB1D10 SINE Alu -7 110 1 1 955 925 194 51 51 chr4 48572185 48572264 -107057856 + ID SINE ID 1 79 -145 1 955 335 259 121 71 chr4 48572264 48572405 -107057715 + B1F SINE Alu 1 148 -1 1 955 388 326 72 26 chr4 48574613 48574808 -107055312 - MARNA DNA Mariner -373 213 10 1 955 272 336 74 14 chr4 48575203 48575351 -107054769 + MIR3 SINE MIR 30 186 -22 1 955 284 253 44 44 chr4 48575857 48575948 -107054172 - MER5A1 DNA MER1_type -75 91 1 1 955 422 343 40 23 chr4 48576174 48576347 -107053773 - MER5B DNA MER1_type -1 177 2 1 955 504 61 0 89 chr4 48577197 48577287 -107052833 - L1Md_F2 LINE L1 0 6582 6501 1 955 348 271 129 26 chr4 48578598 48578753 -107051367 + MIR SINE MIR 59 229 -33 1 955 382 284 25 17 chr4 48578828 48578946 -107051174 - ID_B1 SINE B4 -105 119 1 1 955 225 0 0 0 chr4 48579046 48579071 -107051049 + (T)n Simple_repeat Simple_repeat 1 25 0 1 955 322 286 0 0 chr4 48579172 48579235 -107050885 - ID4 SINE ID -3 80 18 1 955 308 299 0 94 chr4 48579235 48579257 -107050863 - ID SINE ID -143 81 5 1 955 432 280 79 16 chr4 48579608 48579735 -107050385 + ID_B1 SINE B4 78 212 -12 1 955 288 265 25 16 chr4 48579947 48580020 -107050100 - ID4_ SINE ID -77 75 1 1 955 235 261 116 0 chr4 48580283 48580352 -107049768 - MLT1H2 LTR MaLR -348 141 65 1 955 243 0 0 0 chr4 48580527 48580554 -107049566 + (T)n Simple_repeat Simple_repeat 1 27 0 1 955 339 231 266 9 chr4 48580717 48580826 -107049294 - Tigger5 DNA MER2_type -2232 174 38 1 955 509 266 50 101 chr4 48580838 48581071 -107049049 + B3A SINE B2 1 216 0 1 955 256 376 29 10 chr4 48581641 48581743 -107048377 + MIR SINE MIR 44 147 -61 1 955 293 229 43 98 chr4 48582164 48582256 -107047864 + B4A SINE B4 124 210 -82 1 955 290 139 14 0 chr4 48582258 48582330 -107047790 + CT-rich Low_complexity Low_complexity 2 74 0 1 955 228 231 0 19 chr4 48582344 48582397 -107047723 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 955 298 230 171 34 chr4 48582603 48582720 -107047400 + L1MB3 LINE L1 6051 6183 0 1 955 477 243 138 7 chr4 48582986 48583131 -107046989 - MER5A1 DNA MER1_type -2 164 1 1 955 4834 152 51 32 chr4 48583276 48584216 -107045904 + RMER17B LTR ERVK 1 958 0 1 955 419 52 17 0 chr4 48584439 48584497 -107045623 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 955 1239 41 0 7 chr4 48584978 48585126 -107044994 + B1_Mus2 SINE Alu 1 147 0 1 955 834 106 0 0 chr4 48585133 48585256 -107044864 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 1 955 244 260 132 57 chr4 48585326 48585485 -107044635 - L1MC4 LINE L1 -162 7880 7710 1 955 601 302 80 10 chr4 48585607 48585918 -107044202 - L1MC4 LINE L1 -503 7539 7207 1 955 604 271 57 26 chr4 48586039 48586266 -107043854 - Lx8 LINE L1 -384 7312 7081 1 955 1194 47 0 0 chr4 48586448 48586597 -107043523 + (TCTCC)n Simple_repeat Simple_repeat 3 151 0 1 955 387 0 0 0 chr4 48586610 48586653 -107043467 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 955 664 240 16 0 chr4 48586660 48586785 -107043335 - ID_B1 SINE B4 -17 207 81 1 955 341 268 59 72 chr4 48587021 48587174 -107042946 - MamRep488 DNA hAT -12 207 57 2 955 348 383 66 22 chr4 48587518 48587881 -107042239 + L2 LINE L2 1822 2200 -1219 2 955 929 96 19 6 chr4 48587932 48588089 -107042031 + (TTC)n Simple_repeat Simple_repeat 3 161 0 2 955 1238 49 0 0 chr4 48588089 48588233 -107041887 - B1_Mus1 SINE Alu -4 144 1 2 955 683 201 7 0 chr4 48588595 48588749 -107041371 + CT-rich Low_complexity Low_complexity 5 159 0 2 955 243 306 16 0 chr4 48588750 48588812 -107041308 + polypyrimidine Low_complexity Low_complexity 4 66 0 2 955 940 73 8 0 chr4 48588813 48588936 -107041184 + RLTR13B1 LTR ERVK 1 124 -769 2 955 3238 43 5 0 chr4 48588934 48589325 -107040795 + RLTR13B1 LTR ERVK 501 893 0 2 955 217 321 0 0 chr4 48589331 48589384 -107040736 + C-rich Low_complexity Low_complexity 2 54 0 2 955 435 239 101 0 chr4 48589389 48589498 -107040622 - B1F SINE Alu -27 122 3 2 955 366 285 106 0 chr4 48589391 48589514 -107040606 - ID_B1 SINE B4 -26 198 63 2 955 556 256 50 137 chr4 48589644 48589870 -107040250 - L1MA8 LINE L1 -2 6289 6068 2 955 333 0 0 0 chr4 48589870 48589907 -107040213 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 955 556 262 51 123 chr4 48589907 48590105 -107040015 - L1MA8 LINE L1 -202 6098 5902 2 955 201 154 0 0 chr4 48590712 48590751 -107039369 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2 955 507 142 28 0 chr4 48591140 48591246 -107038874 + CT-rich Low_complexity Low_complexity 1 109 0 2 955 513 291 8 0 chr4 48591247 48591374 -107038746 - B1F1 SINE Alu -21 128 1 2 955 222 37 0 0 chr4 48591709 48591736 -107038384 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 955 1235 63 6 0 chr4 48591736 48591895 -107038225 - B2_Mm1a SINE B2 -33 160 1 2 955 202 283 0 0 chr4 48592037 48592083 -107038037 - MIRc SINE MIR -59 209 164 2 955 294 324 89 9 chr4 48592095 48592207 -107037913 - MIR SINE MIR -127 135 15 2 955 274 257 0 0 chr4 48592815 48592885 -107037235 - ID4 SINE ID -13 70 1 2 955 649 294 60 28 chr4 48592979 48593297 -107036823 - L1MA5 LINE L1 -272 6028 5701 2 955 399 310 131 5 chr4 48593549 48593747 -107036373 + L2a LINE L2 3203 3425 -1 2 955 288 53 0 0 chr4 48594628 48594666 -107035454 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 955 243 0 0 0 chr4 48594666 48594693 -107035427 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 955 22 56 0 0 chr4 48594739 48594775 -107035345 + AT_rich Low_complexity Low_complexity 1 36 0 2 955 288 0 0 0 chr4 48594792 48594824 -107035296 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 955 236 150 50 0 chr4 48594824 48594864 -107035256 - B4A SINE B4 -231 61 20 2 955 1276 41 0 0 chr4 48595196 48595343 -107034777 - B1_Mm SINE Alu 0 147 1 2 955 237 322 0 0 chr4 48595407 48595466 -107034654 - MER5B DNA MER1_type -4 174 116 2 955 415 258 189 14 chr4 48596373 48596538 -107033582 - B3A SINE B2 -1 194 1 2 955 626 219 168 6 chr4 48596901 48597080 -107033040 - B3 SINE B2 0 216 9 2 955 243 214 89 62 chr4 48597624 48597722 -107032398 + MIRm SINE MIR 18 113 -95 2 955 24 0 0 0 chr4 48597872 48597896 -107032224 + GC_rich Low_complexity Low_complexity 1 24 0 2 955 29 0 0 0 chr4 48598090 48598119 -107032001 + GC_rich Low_complexity Low_complexity 1 29 0 2 955 24 32 0 0 chr4 48598155 48598186 -107031934 + GC_rich Low_complexity Low_complexity 1 31 0 2 955 228 86 0 0 chr4 48598849 48598884 -107031236 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 955 270 0 0 0 chr4 48599836 48599866 -107030254 + (T)n Simple_repeat Simple_repeat 1 30 0 2 955 207 69 0 0 chr4 48600158 48600187 -107029933 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 955 637 253 95 41 chr4 48600517 48600686 -107029434 - B3 SINE B2 -34 182 5 2 955 252 0 0 0 chr4 48601360 48601388 -107028732 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 955 234 0 0 0 chr4 48601492 48601518 -107028602 + (T)n Simple_repeat Simple_repeat 1 26 0 2 955 225 0 0 0 chr4 48602623 48602648 -107027472 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 955 1055 245 132 39 chr4 48602681 48603297 -107026823 - L1MB7 LINE L1 -107 6077 5328 2 955 315 348 123 82 chr4 48603426 48603534 -107026586 + Tigger13a DNA MER2_type 174 265 -506 2 955 1309 14 0 0 chr4 48603534 48603681 -107026439 + B1_Mm SINE Alu 1 147 0 2 955 315 348 123 82 chr4 48603681 48604026 -107026094 + Tigger13a DNA MER2_type 266 646 -125 2 955 383 158 0 35 chr4 48604066 48604151 -107025969 - Lx7 LINE L1 0 7696 7615 2 955 270 167 0 0 chr4 48604365 48604407 -107025713 + B3A SINE B2 4 45 -153 2 955 215 274 176 0 chr4 48604407 48604509 -107025611 + L2a LINE L2 3032 3151 -275 2 955 898 232 171 11 chr4 48604806 48605093 -107025027 + MTE2b LTR MaLR 43 375 -4 2 955 468 0 0 0 chr4 48605611 48605663 -107024457 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 955 721 230 16 16 chr4 48606455 48606645 -107023475 - B3A SINE B2 -5 193 4 2 955 534 268 63 6 chr4 48606728 48606886 -107023234 - B4A SINE B4 -118 174 8 2 955 198 0 0 0 chr4 48607260 48607282 -107022838 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 955 217 203 271 14 chr4 48607336 48607406 -107022714 - PB1D9 SINE Alu -29 88 1 2 955 211 267 16 62 chr4 48607350 48607414 -107022706 - B4 SINE B4 -151 141 81 2 955 681 205 0 0 chr4 48608154 48608271 -107021849 + B1_Mur1 SINE Alu 25 141 -8 2 955 1226 69 16 79 chr4 48608472 48608662 -107021458 - B2_Mm2 SINE B2 -8 187 10 2 955 213 39 0 0 chr4 48608857 48608883 -107021237 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 955 981 204 0 11 chr4 48608905 48609088 -107021032 - B3A SINE B2 -16 182 2 2 955 344 194 42 21 chr4 48609261 48609356 -107020764 + PB1 SINE Alu 31 127 0 2 955 443 290 75 56 chr4 48610065 48610332 -107019788 - B4 SINE B4 -19 273 2 2 955 1138 82 7 0 chr4 48610349 48610495 -107019625 - B1_Mus2 SINE Alu 0 147 1 2 955 319 311 157 86 chr4 48611615 48611928 -107018192 - L1ME4a LINE L1 -46 6078 5744 2 955 23 0 0 0 chr4 48612452 48612475 -107017645 + AT_rich Low_complexity Low_complexity 1 23 0 2 955 823 142 6 51 chr4 48612960 48613116 -107017004 + B1_Mur3 SINE Alu 1 149 0 2 955 470 258 190 11 chr4 48613841 48614025 -107016095 + MER20 DNA MER1_type 1 217 -2 2 955 279 0 0 0 chr4 48614366 48614397 -107015723 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 955 1685 36 0 0 chr4 48615096 48615289 -107014831 + B2_Mm1a SINE B2 1 193 0 2 955 180 0 0 0 chr4 48615444 48615464 -107014656 + (T)n Simple_repeat Simple_repeat 1 20 0 2 955 1174 82 0 0 chr4 48615464 48615610 -107014510 - B1_Mus2 SINE Alu 0 147 2 2 955 2576 64 3 11 chr4 48616140 48616504 -107013616 - MTA_Mm LTR MaLR -34 362 2 2 955 534 256 126 41 chr4 48616987 48617256 -107012864 - B4A SINE B4 0 292 1 2 955 365 141 0 14 chr4 48617340 48617412 -107012708 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 955 22 35 0 0 chr4 48618872 48618901 -107011219 + AT_rich Low_complexity Low_complexity 1 29 0 2 955 791 270 120 37 chr4 48619644 48620057 -107010063 - MLT2B1 LTR ERVL 0 556 4 2 955 365 300 165 47 chr4 48620062 48620374 -107009746 - MTEb LTR MaLR 0 379 28 2 955 270 81 0 0 chr4 48620374 48620411 -107009709 + (CAAT)n Simple_repeat Simple_repeat 3 39 0 2 955 365 300 165 47 chr4 48620411 48620437 -107009683 - MTEb LTR MaLR -352 27 2 2 955 456 261 111 25 chr4 48621222 48621466 -107008654 - MER20B DNA MER1_type -4 779 515 2 955 25 0 0 0 chr4 48621523 48621548 -107008572 + AT_rich Low_complexity Low_complexity 1 25 0 2 955 24 32 0 0 chr4 48621829 48621860 -107008260 + AT_rich Low_complexity Low_complexity 1 31 0 2 955 1022 129 0 0 chr4 48621907 48622054 -107008066 + B1_Mus2 SINE Alu 1 147 0 2 955 560 230 19 164 chr4 48622381 48622594 -107007526 - B3A SINE B2 -16 182 1 2 955 572 194 8 0 chr4 48623664 48623798 -107006322 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2 955 577 265 74 23 chr4 48624174 48624390 -107005730 - MER77 LTR ERVL -1 606 380 2 955 399 205 13 0 chr4 48624762 48624840 -107005280 - B3A SINE B2 -119 79 1 2 955 486 275 93 7 chr4 48624865 48625015 -107005105 - B4A SINE B4 -88 204 42 2 955 237 65 0 0 chr4 48625866 48625897 -107004223 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 955 249 33 0 0 chr4 48625909 48625939 -107004181 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 955 969 82 134 30 chr4 48626022 48626186 -107003934 - B2_Mm2 SINE B2 -14 181 1 2 955 253 283 0 0 chr4 48626870 48626923 -107003197 + ID4_ SINE ID 2 54 -29 2 955 198 91 0 0 chr4 48627522 48627555 -107002565 + (T)n Simple_repeat Simple_repeat 1 33 0 2 119 1648 36 0 5 chr4 48627571 48627764 -107002356 + B2_Mm1a SINE B2 2 193 0 2 956 374 252 46 9 chr4 48627877 48627985 -107002135 - PB1D7 SINE Alu -8 112 1 2 956 186 43 0 0 chr4 48628381 48628404 -107001716 + (T)n Simple_repeat Simple_repeat 1 23 0 2 956 212 0 36 0 chr4 48631544 48631572 -106998548 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 956 779 157 37 7 chr4 48631572 48631707 -106998413 - B1_Mur4 SINE Alu -10 140 2 2 956 231 36 0 0 chr4 48631915 48631943 -106998177 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 956 654 47 0 0 chr4 48631944 48632030 -106998090 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 956 3537 38 30 9 chr4 48632076 48632503 -106997617 - RLTR10C LTR ERVK 0 436 1 2 956 793 266 79 17 chr4 48632769 48633010 -106997110 + MTE2b LTR MaLR 21 276 -103 2 956 1288 201 71 92 chr4 48633040 48633419 -106996701 - ORR1D1 LTR MaLR -3 371 1 2 956 25 0 0 0 chr4 48633811 48633836 -106996284 + AT_rich Low_complexity Low_complexity 1 25 0 3 956 255 31 0 0 chr4 48633901 48633933 -106996187 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 956 641 220 12 68 chr4 48633936 48634097 -106996023 - B3A SINE B2 -44 154 3 3 956 533 272 45 81 chr4 48634120 48634438 -106995682 - B4 SINE B4 -19 273 1 3 956 429 288 0 18 chr4 48634446 48634559 -106995561 - PB1D10 SINE Alu -6 111 1 3 956 490 279 37 18 chr4 48634859 48635023 -106995097 + B4 SINE B4 2 168 -124 3 956 685 249 108 0 chr4 48635034 48635219 -106994901 + ID_B1 SINE B4 14 218 -6 3 956 424 273 44 60 chr4 48635524 48635707 -106994413 + B3A SINE B2 1 180 -18 3 956 812 224 11 179 chr4 48636654 48637035 -106993085 + Lx8 LINE L1 7157 7473 0 3 956 842 153 62 17 chr4 48637550 48637729 -106992391 - ORR1D1 LTR MaLR -19 355 169 3 956 441 54 0 0 chr4 48637756 48637812 -106992308 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 956 261 146 0 0 chr4 48637822 48637870 -106992250 + (GGA)n Simple_repeat Simple_repeat 3 50 0 3 956 764 168 65 12 chr4 48637879 48638058 -106992062 - ORR1D1 LTR MaLR -187 183 1 3 956 1059 220 14 0 chr4 48639062 48639271 -106990849 - B3 SINE B2 0 216 5 3 956 216 214 0 0 chr4 48639314 48639370 -106990750 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 956 428 348 19 6 chr4 48639375 48639390 -106990730 - RSINE1 SINE B4 -6 159 145 3 956 315 0 0 0 chr4 48639390 48639425 -106990695 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 956 428 348 19 6 chr4 48639425 48639565 -106990555 - RSINE1 SINE B4 -21 144 3 3 956 489 251 156 12 chr4 48639595 48639768 -106990352 - B3A SINE B2 0 198 1 3 956 654 250 66 11 chr4 48639779 48639961 -106990159 - B3 SINE B2 -1 215 24 3 956 613 232 73 6 chr4 48639984 48640162 -106989958 - B3A SINE B2 -8 190 1 3 956 28 29 0 0 chr4 48640269 48640304 -106989816 + AT_rich Low_complexity Low_complexity 1 35 0 3 956 225 0 0 0 chr4 48640330 48640355 -106989765 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 956 1413 56 28 0 chr4 48641023 48641202 -106988918 + B2_Mm2 SINE B2 1 184 -11 3 956 337 281 18 73 chr4 48641262 48641281 -106988839 - B4A SINE B4 0 292 274 3 956 444 111 0 0 chr4 48641281 48641353 -106988767 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 956 337 281 18 73 chr4 48641353 48641498 -106988622 - B4A SINE B4 -19 273 137 3 956 832 135 135 81 chr4 48641611 48641796 -106988324 - B3 SINE B2 0 195 1 3 956 237 250 33 0 chr4 48642732 48642792 -106987328 - MER58C DNA MER1_type -16 199 138 3 956 678 206 37 37 chr4 48642835 48642996 -106987124 + B3A SINE B2 2 162 -36 3 956 844 209 96 0 chr4 48643136 48643323 -106986797 - ID_B1 SINE B4 -8 216 12 3 956 283 230 11 11 chr4 48644265 48644353 -106985767 + C-rich Low_complexity Low_complexity 4 91 0 3 956 803 255 34 0 chr4 48644491 48644699 -106985421 - ID_B1 SINE B4 -8 216 2 3 956 259 260 82 10 chr4 48645376 48645473 -106984647 - ORR1D1 LTR MaLR 0 359 256 3 956 218 273 0 25 chr4 48645556 48645635 -106984485 + GA-rich Low_complexity Low_complexity 2 78 0 3 956 273 294 16 56 chr4 48645656 48645782 -106984338 - ORR1D1 LTR MaLR -248 126 6 3 956 334 335 101 14 chr4 48645789 48645998 -106984122 + L3 LINE CR1 4236 4462 -27 3 956 290 108 34 57 chr4 48646035 48646123 -106983997 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 3 956 269 304 32 21 chr4 48646789 48646883 -106983237 - MLT1A1 LTR MaLR -313 95 1 3 956 786 226 60 10 chr4 48647037 48647238 -106982882 - B3 SINE B2 -3 213 3 3 956 1301 230 85 97 chr4 48647299 48647596 -106982524 - MTD LTR MaLR 0 419 118 3 956 1185 48 7 0 chr4 48647596 48647742 -106982378 + B1_Mus1 SINE Alu 1 147 -1 3 956 1301 230 85 97 chr4 48647742 48647868 -106982252 - MTD LTR MaLR -302 117 1 3 956 297 0 0 0 chr4 48648714 48648747 -106981373 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 956 328 242 125 18 chr4 48649034 48649174 -106980946 - B3A SINE B2 -2 196 37 3 956 23 33 0 0 chr4 48650161 48650191 -106979929 + AT_rich Low_complexity Low_complexity 1 30 0 3 956 213 65 0 0 chr4 48651457 48651488 -106978632 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 956 214 304 52 74 chr4 48652178 48652313 -106977807 + L2b LINE L2 3051 3182 -205 3 956 302 161 79 16 chr4 48652922 48652985 -106977135 + B1F SINE Alu 75 141 -8 3 956 246 259 19 0 chr4 48652991 48653045 -106977075 + ID2 SINE ID 2 56 -27 3 956 191 315 65 33 chr4 48653116 48653208 -106976912 + MIR SINE MIR 155 249 -13 3 956 2026 177 26 26 chr4 48654093 48654471 -106975649 + ORR1C1 LTR MaLR 1 378 0 3 956 297 0 0 0 chr4 48655348 48655381 -106974739 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 956 630 249 85 23 chr4 48655502 48655679 -106974441 - B3A SINE B2 -10 188 1 3 956 474 199 228 45 chr4 48658002 48658165 -106971955 - B3 SINE B2 0 198 9 3 956 318 26 0 0 chr4 48658688 48658727 -106971393 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3 956 1182 35 7 0 chr4 48658728 48658869 -106971251 - B1_Mus1 SINE Alu -6 142 1 3 956 186 43 0 0 chr4 48659341 48659364 -106970756 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 956 774 0 0 0 chr4 48659368 48659454 -106970666 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 3 956 185 211 0 0 chr4 48659636 48659674 -106970446 - MIRb SINE MIR -11 257 220 3 956 308 283 78 83 chr4 48659692 48659729 -106970391 + B3 SINE B2 2 38 -178 3 956 1156 82 0 0 chr4 48659729 48659876 -106970244 + B1_Mus2 SINE Alu 1 147 0 3 956 308 283 78 83 chr4 48659876 48660042 -106970078 + B3 SINE B2 39 204 -12 3 956 317 24 24 0 chr4 48660151 48660193 -106969927 + (TTATA)n Simple_repeat Simple_repeat 5 47 0 3 956 187 344 0 16 chr4 48660228 48660290 -106969830 - MIR SINE MIR -171 91 31 3 956 4218 176 46 26 chr4 48661136 48661940 -106968180 - Lx6 LINE L1 -180 7280 6461 3 956 221 0 35 0 chr4 48662492 48662521 -106967599 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 956 1225 54 0 0 chr4 48662544 48662691 -106967429 - B1_Mus1 SINE Alu 0 148 2 3 956 229 330 11 54 chr4 48663723 48663816 -106966304 - MIR SINE MIR -91 117 29 3 956 270 225 0 0 chr4 48663838 48663918 -106966202 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 956 557 227 39 0 chr4 48664483 48664611 -106965509 + B1F1 SINE Alu 9 141 -8 3 956 522 274 35 30 chr4 48666570 48666739 -106963381 - B4A SINE B4 -120 172 3 3 956 269 431 20 0 chr4 48666962 48667159 -106962961 + L4 LINE RTE 1362 1562 -467 3 956 261 176 0 39 chr4 48667397 48667474 -106962646 + CT-rich Low_complexity Low_complexity 2 75 0 3 956 226 292 138 53 chr4 48667495 48667647 -106962473 - L1MB8 LINE L1 -91 6087 5923 3 956 781 269 54 19 chr4 48667654 48667859 -106962261 - ID_B1 SINE B4 -11 213 2 3 956 653 272 111 34 chr4 48667859 48668209 -106961911 - L1MB8 LINE L1 -237 5941 5565 3 956 386 250 28 19 chr4 48668369 48668475 -106961645 - PB1D10 SINE Alu -1 116 10 3 956 296 269 0 0 chr4 48668421 48668488 -106961632 - B4A SINE B4 -144 148 82 3 956 334 161 24 36 chr4 48668488 48668572 -106961548 - L1MB8 LINE L1 -805 5375 5293 3 956 474 129 0 0 chr4 48668621 48668706 -106961414 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 956 211 151 36 54 chr4 48668708 48668764 -106961356 - RSINE1 SINE B4 -36 129 75 3 956 213 314 134 24 chr4 48668865 48668992 -106961128 - B4A SINE B4 -149 143 3 3 956 526 278 69 40 chr4 48668999 48669276 -106960844 - L1MB8 LINE L1 -867 5279 4995 3 956 1467 216 49 19 chr4 48669276 48669644 -106960476 - MTD LTR MaLR 0 419 41 3 956 302 337 64 16 chr4 48669682 48669863 -106960257 - L1MB8 LINE L1 -1175 4971 4781 3 956 313 120 20 0 chr4 48670718 48670768 -106959352 + B1F SINE Alu 98 148 -1 3 956 1217 48 7 0 chr4 48670801 48670947 -106959173 + B1_Mm SINE Alu 1 147 0 3 956 462 132 0 0 chr4 48670947 48671023 -106959097 + (A)n Simple_repeat Simple_repeat 1 76 0 3 956 1911 259 42 15 chr4 48671037 48671585 -106958535 + Lx8 LINE L1 6911 7473 0 3 956 597 197 16 8 chr4 48672381 48672504 -106957616 + RSINE1 SINE B4 1 124 -41 3 956 378 115 0 0 chr4 48672504 48672565 -106957555 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 956 300 321 18 0 chr4 48673174 48673286 -106956834 - MIRb SINE MIR -141 127 14 3 956 180 333 102 16 chr4 48673817 48673945 -106956175 - MIR3 SINE MIR -14 194 56 3 956 23 0 0 0 chr4 48675940 48675963 -106954157 + AT_rich Low_complexity Low_complexity 1 23 0 3 956 365 290 28 28 chr4 48677549 48677691 -106952429 - B1F SINE Alu -3 146 5 3 956 1634 52 0 0 chr4 48679226 48679419 -106950701 - B2_Mm1t SINE B2 0 193 1 3 956 442 269 86 32 chr4 48679786 48679960 -106950160 + ID_B1 SINE B4 61 224 0 3 956 556 64 0 0 chr4 48680665 48680743 -106949377 + B1_Mus2 SINE Alu 68 145 -2 3 956 957 75 90 0 chr4 48680767 48680901 -106949219 + B1_Mus1 SINE Alu 3 148 0 3 956 246 329 12 12 chr4 48681072 48681158 -106948962 - PB1D10 SINE Alu -20 97 12 3 956 24 0 0 0 chr4 48682468 48682492 -106947628 + AT_rich Low_complexity Low_complexity 1 24 0 3 956 5987 93 9 14 chr4 48682498 48683372 -106946748 - Lx3B LINE L1 -1 6972 6103 3 956 227 320 62 15 chr4 48683722 48683852 -106946268 + L2 LINE L2 2792 2927 -492 3 956 21 0 0 0 chr4 48686817 48686838 -106943282 + AT_rich Low_complexity Low_complexity 1 21 0 3 956 268 242 0 0 chr4 48686879 48686938 -106943182 + B4A SINE B4 78 140 -152 3 956 641 73 0 35 chr4 48687028 48687141 -106942979 + (TCC)n Simple_repeat Simple_repeat 2 110 0 3 956 985 134 0 7 chr4 48687162 48687312 -106942808 - B1_Mur4 SINE Alu 0 150 2 3 956 1083 68 0 0 chr4 48688199 48688332 -106941788 + B1_Mus2 SINE Alu 1 133 -14 3 956 216 0 0 0 chr4 48688335 48688359 -106941761 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 956 363 223 191 58 chr4 48688919 48689176 -106940944 - B4A SINE B4 0 292 2 4 956 286 263 284 8 chr4 48690472 48690606 -106939514 + B3A SINE B2 2 172 -26 4 956 194 0 39 0 chr4 48690790 48690816 -106939304 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 4 956 332 213 521 28 chr4 48690823 48690959 -106939161 - ID_B1 SINE B4 -21 203 1 4 956 3552 38 38 0 chr4 48691408 48691828 -106938292 + RLTR10C LTR ERVK 1 436 0 4 956 28 0 0 0 chr4 48692123 48692151 -106937969 + AT_rich Low_complexity Low_complexity 1 28 0 4 956 28 0 0 0 chr4 48692253 48692281 -106937839 + AT_rich Low_complexity Low_complexity 1 28 0 4 956 648 240 99 0 chr4 48692293 48692464 -106937656 - B3 SINE B2 -28 188 1 4 956 477 115 0 0 chr4 48692476 48692554 -106937566 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 956 2088 153 52 127 chr4 48692626 48692707 -106937413 + RLTR41 LTR ERV1 3 85 -361 4 956 180 0 0 0 chr4 48692707 48692727 -106937393 + (C)n Simple_repeat Simple_repeat 1 20 0 4 956 2088 153 52 127 chr4 48692727 48693125 -106936995 + RLTR41 LTR ERV1 86 446 0 4 956 318 323 48 83 chr4 48693168 48693313 -106936807 - B4A SINE B4 -120 172 33 4 956 2192 59 3 34 chr4 48694125 48694422 -106935698 - L1_Mus1 LINE L1 -6 6561 6274 4 956 180 328 90 0 chr4 48694439 48694506 -106935614 + MIR SINE MIR 31 103 -159 4 956 1189 44 119 0 chr4 48694865 48695024 -106935096 - B2_Mm2 SINE B2 -17 178 1 4 956 180 373 15 0 chr4 48695145 48695212 -106934908 + L2b LINE L2 3095 3162 -213 4 956 2059 195 58 25 chr4 48695768 48696289 -106933831 - RLTR20A LTR ERVK -3 538 1 4 956 2834 45 0 6 chr4 48696530 48696869 -106933251 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 956 341 22 22 0 chr4 48696985 48697031 -106933089 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 956 765 33 0 0 chr4 48698634 48698726 -106931394 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 4 956 1159 37 0 0 chr4 48698726 48698862 -106931258 - B1_Mus1 SINE Alu -12 136 1 4 956 396 0 0 0 chr4 48698864 48698908 -106931212 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 4 956 666 40 0 48 chr4 48698908 48699013 -106931107 + (TTCCC)n Simple_repeat Simple_repeat 1 100 0 4 956 1376 50 0 11 chr4 48699014 48699196 -106930924 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 956 899 132 22 7 chr4 48699196 48699333 -106930787 - B1_Mus1 SINE Alu -8 140 2 4 956 215 347 63 16 chr4 48699412 48699487 -106930633 + B4A SINE B4 1 81 -211 4 956 3486 72 20 2 chr4 48699487 48699974 -106930146 - LTRIS2 LTR ERV1 0 564 69 4 956 243 317 54 71 chr4 48699968 48700002 -106930118 + B4A SINE B4 55 86 -206 4 956 231 333 78 10 chr4 48700002 48700105 -106930015 + PB1D7 SINE Alu 1 110 -10 4 956 432 0 0 0 chr4 48700197 48700245 -106929875 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 956 4285 52 40 25 chr4 48700441 48700993 -106929127 - LTRIS2 LTR ERV1 0 564 5 4 956 828 291 77 57 chr4 48701638 48701929 -106928191 + L1MA5A LINE L1 5369 5659 -638 4 956 1806 161 100 31 chr4 48701929 48702288 -106927832 - ORR1C2 LTR MaLR 0 384 1 4 956 828 291 77 57 chr4 48702288 48702502 -106927618 + L1MA5A LINE L1 5660 5883 -414 4 956 414 0 0 0 chr4 48702556 48702602 -106927518 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 956 2051 122 64 20 chr4 48702662 48703055 -106927065 + RMER17C LTR ERVK 1 410 0 4 956 550 304 6 0 chr4 48703150 48703308 -106926812 + B4 SINE B4 11 169 -123 4 956 207 0 0 0 chr4 48703397 48703420 -106926700 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 956 528 288 240 18 chr4 48703514 48703843 -106926277 + LTR41 LTR ERVL 15 416 -352 4 956 582 114 0 0 chr4 48704382 48704470 -106925650 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 956 583 241 22 8 chr4 48704471 48704605 -106925515 - B1F SINE Alu -7 142 7 4 956 231 329 31 106 chr4 48704605 48704631 -106925489 - B4 SINE B4 -73 219 72 4 956 555 96 0 0 chr4 48705594 48705677 -106924443 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 4 956 536 171 80 16 chr4 48705679 48705804 -106924316 - B1_Mur3 SINE Alu -5 144 12 4 956 297 0 0 0 chr4 48706321 48706354 -106923766 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 956 445 276 9 0 chr4 48706647 48706763 -106923357 + PB1D10 SINE Alu 1 117 0 4 956 255 291 5 202 chr4 48706790 48706940 -106923180 + RSINE1 SINE B4 7 124 -41 4 956 1776 172 62 65 chr4 48706940 48707325 -106922795 - ORR1C2 LTR MaLR 0 384 1 4 956 255 291 5 202 chr4 48707325 48707372 -106922748 + RSINE1 SINE B4 125 165 0 4 956 376 158 11 58 chr4 48707519 48707606 -106922514 + ID_B1 SINE B4 137 219 -5 4 956 535 101 13 0 chr4 48707528 48707607 -106922513 + B1_Mur2 SINE Alu 66 145 -4 4 956 2305 234 118 25 chr4 48708669 48708845 -106921275 + RMER1C Other Other 599 773 -569 4 956 3812 53 12 62 chr4 48708845 48709364 -106920756 + MT2_Mm LTR ERVL 1 493 0 4 956 2305 234 118 25 chr4 48709364 48709574 -106920546 + RMER1C Other Other 774 997 -345 4 956 513 0 0 0 chr4 48709574 48709631 -106920489 + (CACCC)n Simple_repeat Simple_repeat 3 59 0 4 956 2305 234 118 25 chr4 48709631 48709923 -106920197 + RMER1C Other Other 998 1341 -1 4 956 1670 47 0 0 chr4 48709928 48710121 -106919999 + B2_Mm1t SINE B2 1 193 0 4 956 345 24 0 0 chr4 48710200 48710242 -106919878 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 956 552 182 22 0 chr4 48710670 48710807 -106919313 + GA-rich Low_complexity Low_complexity 2 141 0 4 956 205 330 78 0 chr4 48710835 48710938 -106919182 + MIRb SINE MIR 26 136 -132 4 956 335 298 138 28 chr4 48711876 48712021 -106918099 - RSINE1 SINE B4 0 165 5 4 956 216 0 0 0 chr4 48712826 48712850 -106917270 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 4 956 1954 164 75 21 chr4 48712939 48713325 -106916795 - MTB_Mm LTR MaLR 0 407 1 4 956 265 232 50 50 chr4 48713504 48713604 -106916516 + PB1D10 SINE Alu 8 107 -10 4 956 312 27 0 0 chr4 48713604 48713641 -106916479 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 956 283 280 143 8 chr4 48714066 48714192 -106915928 - LTR48 LTR ERV1 -643 144 2 4 956 273 338 0 0 chr4 48714233 48714313 -106915807 - ID4_ SINE ID 0 83 4 4 956 562 195 119 24 chr4 48714347 48714473 -106915647 + B3 SINE B2 79 216 0 4 956 611 263 59 94 chr4 48714533 48714688 -106915432 + MER82 DNA MER2_type 7 149 -504 4 956 1213 62 0 0 chr4 48714688 48714834 -106915286 - B1_Mm SINE Alu 0 147 2 4 956 611 263 59 94 chr4 48714834 48714964 -106915156 + MER82 DNA MER2_type 150 282 -371 4 956 1584 192 60 17 chr4 48715008 48715358 -106914762 - ORR1D1 LTR MaLR -1 373 9 4 956 396 0 0 0 chr4 48715358 48715402 -106914718 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 956 2456 107 120 12 chr4 48715402 48715828 -106914292 + IAPLTR2_Mm LTR ERVK 4 475 0 4 956 452 261 112 0 chr4 48715917 48716051 -106914069 + B1F SINE Alu 1 149 0 4 956 445 250 92 58 chr4 48716269 48716443 -106913677 - B3A SINE B2 -15 183 4 4 956 877 182 7 0 chr4 48716941 48717084 -106913036 - B1_Mur1 SINE Alu -5 144 1 4 956 261 0 0 0 chr4 48717625 48717654 -106912466 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 956 361 220 100 9 chr4 48718184 48718294 -106911826 + B1_Mur1 SINE Alu 24 143 -6 4 956 2535 204 70 82 chr4 48718341 48719075 -106911045 - RMER1C Other Other 0 1342 231 4 956 477 0 0 0 chr4 48719075 48719128 -106910992 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 956 665 276 141 49 chr4 48719128 48719205 -106910915 - RMER1C Other Other -1112 230 154 4 956 259 222 62 0 chr4 48719296 48719377 -106910743 + GA-rich Low_complexity Low_complexity 3 88 0 4 956 395 304 93 42 chr4 48719390 48719768 -106910352 - L1MEg LINE L1 -3478 2668 2272 4 956 386 297 99 131 chr4 48719839 48720060 -106910060 - ID_B1 SINE B4 -8 216 3 4 956 314 339 0 35 chr4 48720064 48720180 -106909940 - PB1D10 SINE Alu -5 112 1 4 956 464 302 76 29 chr4 48720215 48720491 -106909629 - L1MEg LINE L1 -4550 1692 1404 4 956 486 287 24 34 chr4 48720495 48720704 -106909416 - MER2 DNA MER2_type -5 340 134 4 956 435 333 144 34 chr4 48720862 48721654 -106908466 - L1MEg LINE L1 -4971 1271 393 4 956 933 145 14 0 chr4 48721865 48722010 -106908110 + B1_Mur4 SINE Alu 2 148 -2 4 956 555 283 156 23 chr4 48723844 48724101 -106906019 - MLT1A0 LTR MaLR -12 353 63 4 956 1151 68 7 0 chr4 48724178 48724324 -106905796 - B1_Mus2 SINE Alu 0 147 1 4 956 635 231 0 96 chr4 48724435 48724460 -106905660 - RSINE1 SINE B4 0 165 141 4 956 1149 113 0 0 chr4 48724460 48724637 -106905483 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 956 635 231 0 96 chr4 48724637 48724788 -106905332 - RSINE1 SINE B4 -25 140 6 4 956 701 268 92 4 chr4 48724862 48725113 -106905007 - RLTR40 LTR ERVK -520 297 25 4 956 7241 56 11 10 chr4 48725825 48726740 -106903380 + L1Md_F2 LINE L1 5667 6582 0 4 956 402 310 149 27 chr4 48728178 48728424 -106901696 + B4A SINE B4 13 288 -4 4 956 708 52 0 0 chr4 48728440 48728537 -106901583 + (CA)n Simple_repeat Simple_repeat 1 97 0 4 956 361 263 183 26 chr4 48728676 48728906 -106901214 - L1MDa LINE L1 -6346 287 22 4 956 871 274 108 36 chr4 48729339 48729699 -106900421 + MER63B DNA AcHobo 1 386 -50 4 956 785 217 12 39 chr4 48730843 48731093 -106899027 - MTEa LTR MaLR -2 377 109 4 956 551 286 179 26 chr4 48731522 48731742 -106898378 + Lx8 LINE L1 7079 7298 -175 4 956 237 65 0 0 chr4 48731742 48731773 -106898347 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 956 551 286 179 26 chr4 48731773 48731893 -106898227 + Lx8 LINE L1 7299 7471 -2 4 956 3594 266 130 22 chr4 48731995 48733101 -106897019 + Lx8 LINE L1 6127 7328 -145 4 956 288 0 0 0 chr4 48733101 48733133 -106896987 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 956 3594 266 130 22 chr4 48733133 48733242 -106896878 + Lx8 LINE L1 7329 7472 -1 4 956 324 283 50 21 chr4 48734053 48734194 -106895926 - L2a LINE L2 -1 3425 3281 4 956 826 298 177 8 chr4 48734378 48734767 -106895353 - Lx8 LINE L1 -525 6948 6494 4 956 1238 252 157 33 chr4 48734793 48735253 -106894867 + Lx8 LINE L1 6941 7457 -16 4 956 971 231 25 214 chr4 48735597 48736070 -106894050 - ORR1C2 LTR MaLR 0 384 1 5 956 1262 48 0 0 chr4 48736871 48737018 -106893102 - B1_Mm SINE Alu 0 147 1 5 956 354 45 0 0 chr4 48737104 48737148 -106892972 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 956 375 295 0 18 chr4 48737259 48737373 -106892747 - PB1D10 SINE Alu -1 116 5 5 956 367 198 208 69 chr4 48737482 48737612 -106892508 + B1_Mur1 SINE Alu 1 148 -1 5 956 515 304 111 66 chr4 48737751 48738022 -106892098 - B4A SINE B4 0 292 10 5 956 414 57 0 0 chr4 48738453 48738506 -106891614 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 956 1253 175 9 35 chr4 48741337 48741568 -106888552 - URR1B DNA MER1_type 0 225 1 5 956 874 254 90 84 chr4 48741598 48741757 -106888363 + ORR1E LTR MaLR 1 153 -206 5 956 2524 59 0 24 chr4 48741757 48742087 -106888033 - L1_Mus2 LINE L1 -1 6565 6244 5 956 874 254 90 84 chr4 48742087 48742284 -106887836 + ORR1E LTR MaLR 154 359 0 5 956 2171 165 49 10 chr4 48742523 48742928 -106887192 + MTC LTR MaLR 1 421 0 5 956 774 294 133 50 chr4 48743224 48743807 -106886313 + RMER13A LTR ERVK 30 694 -214 5 956 208 302 20 30 chr4 48744821 48744920 -106885200 - MER5A DNA MER1_type -73 116 19 5 956 1914 173 70 8 chr4 48745329 48745685 -106884435 + ORR1C1 LTR MaLR 1 378 0 5 956 641 99 0 0 chr4 48745685 48745786 -106884334 + ORR1C1-int LTR MaLR 1 101 -1408 5 956 6410 164 47 20 chr4 48745891 48747227 -106882893 + ORR1C1-int LTR MaLR 88 1459 -50 5 956 1004 149 11 44 chr4 48747243 48747425 -106882695 + ORR1C1 LTR MaLR 192 367 0 5 956 374 176 12 0 chr4 48747570 48747655 -106882465 + (TA)n Simple_repeat Simple_repeat 1 86 0 5 956 225 182 0 0 chr4 48747654 48747709 -106882411 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 956 313 71 143 0 chr4 48747712 48747768 -106882352 + HAL1-3A_ME LINE L1 1976 2039 -819 5 956 2140 145 62 8 chr4 48748233 48748623 -106881497 + RMER4A LTR ERVK 56 466 0 5 956 2459 129 84 27 chr4 48748630 48749117 -106881003 - RLTR24 LTR ERV1 -14 515 1 5 956 336 102 0 0 chr4 48749295 48749344 -106880776 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 956 251 54 27 0 chr4 48749395 48749432 -106880688 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 5 956 1798 238 26 64 chr4 48749466 48750057 -106880063 + RMER1B Other Other 8 534 -532 5 956 5139 171 87 4 chr4 48750057 48751007 -106879113 + RMER1A Other Other 1 1029 -1 5 956 495 48 0 0 chr4 48751028 48751090 -106879030 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 5 956 787 288 125 10 chr4 48751738 48752121 -106877999 - MER67C LTR ERV1 -235 476 50 5 956 1397 53 16 5 chr4 48752249 48752437 -106877683 - L1Md_F2 LINE L1 -1 6581 6392 5 956 1146 68 7 0 chr4 48752479 48752625 -106877495 + B1_Mus1 SINE Alu 2 148 0 5 956 210 100 77 39 chr4 48753063 48753115 -106877005 + (TGAG)n Simple_repeat Simple_repeat 1 54 0 5 956 433 322 17 0 chr4 48753122 48753240 -106876880 + RSINE1 SINE B4 2 121 -44 5 956 507 33 0 0 chr4 48753241 48753302 -106876818 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 956 869 246 19 14 chr4 48753542 48753756 -106876364 + B3 SINE B2 1 215 -1 5 956 263 333 0 0 chr4 48754186 48754273 -106875847 + L2b LINE L2 3288 3374 -1 5 956 745 201 60 49 chr4 48754866 48755049 -106875071 + MTD LTR MaLR 1 185 -234 5 956 198 167 0 0 chr4 48755050 48755086 -106875034 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 956 3420 28 10 0 chr4 48755176 48755568 -106874552 + MTA_Mm LTR MaLR 1 396 0 5 956 3679 74 7 7 chr4 48755568 48756114 -106874006 + MTA_Mm-int LTR MaLR 1 546 -552 5 956 6630 42 23 7 chr4 48756115 48756562 -106873558 - RLTR13B1 LTR ERVK 0 893 451 5 956 4602 6 0 0 chr4 48756562 48757055 -106873065 - MT2_Mm LTR ERVL 0 493 1 5 956 6630 42 23 7 chr4 48757055 48757486 -106872634 - RLTR13B1 LTR ERVK -443 450 1 5 956 3784 56 13 7 chr4 48757490 48758032 -106872088 + MTA_Mm-int LTR MaLR 554 1098 0 5 956 2967 25 116 0 chr4 48758032 48758387 -106871733 + MTA_Mm LTR MaLR 1 396 0 5 119 1112 124 119 0 chr4 48758729 48758931 -106871189 + MTD LTR MaLR 193 418 -1 5 957 634 238 67 13 chr4 48758969 48759118 -106871002 - RSINE1 SINE B4 0 165 9 5 957 186 71 0 0 chr4 48759739 48759767 -106870353 + (T)n Simple_repeat Simple_repeat 1 28 0 5 957 1847 146 52 78 chr4 48759905 48760383 -106869737 - MT2B LTR ERVL -17 584 1 5 957 1774 123 30 126 chr4 48761133 48761497 -106868623 - ORR1A4 LTR MaLR 0 329 1 5 957 234 240 101 30 chr4 48761550 48761571 -106868549 + MT2B LTR ERVL 180 222 -379 5 957 242 240 0 0 chr4 48761571 48761621 -106868499 + PB1D10 SINE Alu 52 101 -16 5 957 234 240 101 30 chr4 48761621 48761649 -106868471 + MT2B LTR ERVL 223 285 -316 5 957 423 0 0 0 chr4 48762439 48762486 -106867634 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 957 198 250 0 0 chr4 48762669 48762713 -106867407 + L2 LINE L2 2835 2878 -541 5 957 1655 227 31 73 chr4 48763542 48764092 -106866028 - RLTR11A2 LTR ERVK 0 527 1 5 957 486 224 0 10 chr4 48764268 48764367 -106865753 + B1_Mur2 SINE Alu 42 139 -10 5 957 239 0 32 0 chr4 48764367 48764398 -106865722 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 957 626 94 0 64 chr4 48764400 48764571 -106865549 + (CCA)n Simple_repeat Simple_repeat 1 160 0 5 957 580 344 42 42 chr4 48764883 48765123 -106864997 + Lx8 LINE L1 7031 7270 -203 5 957 387 56 0 0 chr4 48765134 48765188 -106864932 + (CTAAA)n Simple_repeat Simple_repeat 4 57 0 5 957 492 305 26 13 chr4 48766138 48766294 -106863826 + RSINE1 SINE B4 8 165 0 5 957 1039 283 47 38 chr4 48766692 48767239 -106862881 + Lx8 LINE L1 5496 6101 -1359 5 957 324 0 0 0 chr4 48769023 48769059 -106861061 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 957 1138 161 0 25 chr4 48769065 48769269 -106860851 + ORR1C1 LTR MaLR 180 378 0 5 957 265 335 136 23 chr4 48769709 48769923 -106860197 + L1M6 LINE L1 740 977 -5519 5 957 2068 125 21 27 chr4 48770020 48770356 -106859764 - Lx2B LINE L1 -8 6992 6659 5 957 185 222 36 18 chr4 48770363 48770418 -106859702 - MIRb SINE MIR -96 172 117 5 957 209 184 0 39 chr4 48770948 48770999 -106859121 + (TAA)n Simple_repeat Simple_repeat 1 49 0 5 957 683 310 24 58 chr4 48771019 48771310 -106858810 + B4A SINE B4 1 281 -11 5 957 257 250 52 35 chr4 48772262 48772378 -106857742 + L1M6 LINE L1 2392 2509 -3987 5 957 27 62 0 0 chr4 48772412 48772460 -106857660 + AT_rich Low_complexity Low_complexity 1 48 0 5 957 574 281 144 55 chr4 48774022 48774369 -106855751 - L1MA9 LINE L1 -360 5952 5575 5 957 255 182 15 29 chr4 48774424 48774492 -106855628 - L1MA9 LINE L1 -845 5452 5386 5 957 405 263 22 59 chr4 48774496 48774718 -106855402 - Lx7 LINE L1 -4 7692 7479 5 957 295 26 0 0 chr4 48775391 48775429 -106854691 + U2 snRNA snRNA 1 38 -150 5 957 680 45 0 0 chr4 48775745 48775833 -106854287 - 5S rRNA rRNA -32 89 2 5 957 1488 38 27 21 chr4 48775921 48776108 -106854012 - B2_Mm1a SINE B2 -4 189 2 5 957 195 157 0 0 chr4 48777424 48777475 -106852645 + (CAA)n Simple_repeat Simple_repeat 2 52 0 5 957 228 273 76 25 chr4 48777660 48777818 -106852302 + (TAATG)n Simple_repeat Simple_repeat 1 166 0 5 957 558 243 22 56 chr4 48778368 48778547 -106851573 + RLTR14 LTR ERV1 1 173 -209 5 957 740 307 72 26 chr4 48779167 48779512 -106850608 - MLT1D LTR MaLR -8 497 137 5 957 490 282 161 47 chr4 48779936 48780408 -106849712 - MER63C DNA AcHobo -4 926 401 5 957 803 261 0 0 chr4 48780423 48780588 -106849532 + B3 SINE B2 2 166 -50 5 957 384 228 0 21 chr4 48780610 48780704 -106849416 + RLTR23 LTR ERV1 8 99 -331 5 957 625 311 67 41 chr4 48780764 48781109 -106849011 + RLTR23 LTR ERV1 77 430 0 5 957 186 43 0 0 chr4 48781712 48781735 -106848385 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5 957 2662 99 7 55 chr4 48782154 48782590 -106847530 + RLTR9F LTR ERVK 1 415 0 5 957 311 75 0 54 chr4 48783272 48783328 -106846792 + HAL1-3A_ME LINE L1 1975 2027 -831 5 957 213 108 0 0 chr4 48783335 48783372 -106846748 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 5 957 368 118 12 95 chr4 48783373 48783457 -106846663 + HAL1-3A_ME LINE L1 1976 2052 -806 5 957 615 134 25 0 chr4 48783720 48783839 -106846281 + GA-rich Low_complexity Low_complexity 1 122 0 5 957 1428 123 5 5 chr4 48785909 48786164 -106843956 - ORR1B1 LTR MaLR 0 394 99 5 957 297 0 0 0 chr4 48787427 48787460 -106842660 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 957 307 265 101 10 chr4 48787464 48787563 -106842557 - RSINE1 SINE B4 -44 121 14 5 957 225 0 0 0 chr4 48787825 48787850 -106842270 + (T)n Simple_repeat Simple_repeat 1 25 0 5 957 4909 85 20 0 chr4 48788619 48789269 -106840851 - Lx3_Mus LINE L1 0 7009 6347 5 957 249 336 28 9 chr4 48789680 48789788 -106840332 + MIRc SINE MIR 49 158 -110 5 957 4338 48 0 0 chr4 48790012 48790515 -106839605 + RLTR1C LTR ERV1 1 503 0 5 957 5479 212 70 13 chr4 48790962 48792154 -106837966 + Lx9 LINE L1 6377 7636 -8 5 957 22 0 0 0 chr4 48792893 48792915 -106837205 + AT_rich Low_complexity Low_complexity 1 22 0 5 957 647 301 13 13 chr4 48793196 48793397 -106836723 - B3A SINE B2 0 216 9 5 957 1305 148 76 0 chr4 48793636 48793846 -106836274 + URR1A DNA MER1_type 1 226 0 5 957 778 289 115 27 chr4 48794149 48794515 -106835605 - MLT1C LTR MaLR -5 462 65 5 957 468 0 0 0 chr4 48794889 48794941 -106835179 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 957 360 0 0 0 chr4 48794941 48794980 -106835140 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 957 404 294 78 0 chr4 48794986 48795163 -106834957 - B4A SINE B4 -18 274 83 5 957 291 95 173 13 chr4 48795163 48795238 -106834882 - Lx9 LINE L1 -40 7604 7518 5 957 333 0 0 0 chr4 48795238 48795275 -106834845 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 957 208 356 49 56 chr4 48795307 48795450 -106834670 - MIRc SINE MIR -109 159 18 5 957 3616 263 79 16 chr4 48796483 48796584 -106833536 + Lx8 LINE L1 6057 6169 -1304 5 957 450 0 0 0 chr4 48796584 48796634 -106833486 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 957 3616 263 79 16 chr4 48796634 48797548 -106832572 + Lx8 LINE L1 6170 7135 -338 5 957 568 230 174 25 chr4 48797543 48797739 -106832381 + Lx8 LINE L1 7247 7471 -2 5 957 2614 211 6 4 chr4 48798181 48798666 -106831454 + Lx9 LINE L1 6800 7285 -359 5 957 264 253 0 0 chr4 48798666 48798816 -106831304 + (CA)n Simple_repeat Simple_repeat 1 150 0 6 957 675 202 0 0 chr4 48798827 48799088 -106831032 + (CA)n Simple_repeat Simple_repeat 1 261 0 6 957 2601 58 0 3 chr4 48799090 48799402 -106830718 - RLTR10E LTR ERVK 0 311 1 6 957 408 236 0 0 chr4 48799437 48799615 -106830505 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 957 506 263 82 15 chr4 48799810 48799945 -106830175 - RSINE1 SINE B4 -19 146 3 6 957 7187 164 40 5 chr4 48799959 48801245 -106828875 - Lx2B LINE L1 0 7000 5670 6 957 2212 156 0 3 chr4 48801243 48801590 -106828530 + Lx2B LINE L1 5325 5670 -216 6 957 25 0 0 0 chr4 48801591 48801616 -106828504 + AT_rich Low_complexity Low_complexity 1 25 0 6 957 335 253 13 0 chr4 48801756 48801835 -106828285 + ID4 SINE ID 2 81 -2 6 957 207 233 0 0 chr4 48802254 48802297 -106827823 - MIR SINE MIR -103 159 117 6 957 996 254 103 46 chr4 48802442 48802792 -106827328 - L1_Rod LINE L1 -119 5728 5359 6 957 1293 173 9 5 chr4 48805604 48805825 -106824295 - URR1B DNA MER1_type -2 223 2 6 957 3148 52 204 2 chr4 48805840 48806266 -106823854 - RLTR1B LTR ERV1 0 512 1 6 957 25 0 0 0 chr4 48806314 48806339 -106823781 + AT_rich Low_complexity Low_complexity 1 25 0 6 957 1186 43 0 0 chr4 48807108 48807247 -106822873 + B1_Mus1 SINE Alu 1 139 -9 6 957 447 63 0 0 chr4 48807247 48807310 -106822810 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 6 957 305 24 0 23 chr4 48807313 48807356 -106822764 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 957 787 153 13 0 chr4 48807666 48807816 -106822304 + CT-rich Low_complexity Low_complexity 1 152 0 6 957 38718 30 0 1 chr4 48808021 48814733 -106815387 - L1Md_T LINE L1 0 6585 1 6 957 183 156 0 0 chr4 48814981 48815013 -106815107 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 957 662 250 130 0 chr4 48815076 48815284 -106814836 - MER2 DNA MER2_type -25 320 86 6 957 1468 204 182 10 chr4 48815372 48815763 -106814357 + MT2A LTR ERVL 1 458 -75 6 957 26 0 0 0 chr4 48815919 48815945 -106814175 + AT_rich Low_complexity Low_complexity 1 26 0 6 957 909 153 161 45 chr4 48816101 48816300 -106813820 + URR1A DNA MER1_type 5 226 0 6 957 667 260 48 27 chr4 48817629 48817815 -106812305 + B3A SINE B2 5 194 -4 6 957 1463 151 124 0 chr4 48818233 48818524 -106811596 + IAPEY3_LTR LTR ERVK 1 327 -5 6 957 3733 129 153 107 chr4 48818527 48819337 -106810783 + MMERVK10C-int LTR ERVK 1 847 -6734 6 957 773 223 97 0 chr4 48819312 48819487 -106810633 + IAPEz-int LTR ERVK 312 503 -4903 6 957 635 221 238 17 chr4 48819455 48819690 -106810430 + RLTR19-int LTR ERVK 376 662 -5475 6 957 290 192 58 0 chr4 48819685 48819737 -106810383 + RLTR19-int LTR ERVK 950 1004 -983 6 957 308 299 17 8 chr4 48819867 48819985 -106810135 + IAP-d-int LTR ERVK 822 940 -5602 6 957 275 269 13 0 chr4 48820036 48820114 -106810006 + IAP-d-int LTR ERVK 1488 1566 -6015 6 957 285 218 36 0 chr4 48820131 48820186 -106809934 + IAPEz-int LTR ERVK 447 503 -6039 6 957 1246 138 148 0 chr4 48820186 48820403 -106809717 + IAPEz-int LTR ERVK 5007 5255 -1287 6 957 1513 119 107 40 chr4 48820403 48820719 -106809401 + IAPEY3-int LTR ERVK 6965 7338 -342 6 957 1416 195 55 15 chr4 48820736 48821079 -106809041 + IAPEz-int LTR ERVK 6125 6481 0 6 957 1153 194 128 36 chr4 48821079 48821383 -106808737 + IAPEY3_LTR LTR ERVK 1 332 0 6 957 832 231 54 33 chr4 48822200 48822442 -106807678 - RMER13A LTR ERVK -518 342 96 6 957 838 242 0 0 chr4 48822636 48822814 -106807306 + Lx5 LINE L1 6587 6764 -286 6 957 4518 159 80 10 chr4 48822826 48823716 -106806404 - Lx3C LINE L1 -2 6974 6023 6 957 409 329 7 0 chr4 48824016 48824153 -106805967 + RSINE1 SINE B4 4 141 -24 6 957 237 65 0 0 chr4 48824154 48824185 -106805935 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 957 384 304 0 35 chr4 48824282 48824398 -106805722 + PB1D10 SINE Alu 1 112 -5 6 957 294 359 42 7 chr4 48824470 48824613 -106805507 + Lx8 LINE L1 7105 7252 -221 6 957 242 286 16 56 chr4 48824688 48824814 -106805306 + Lx7 LINE L1 7559 7679 -17 6 957 1002 220 9 40 chr4 48824859 48825082 -106805038 + B3 SINE B2 1 216 0 6 957 789 185 0 0 chr4 48825182 48825355 -106804765 + (CA)n Simple_repeat Simple_repeat 2 174 0 6 957 276 292 43 34 chr4 48825357 48825474 -106804646 - MLT1J LTR MaLR -327 283 106 6 957 223 361 33 0 chr4 48825490 48825612 -106804508 + (TGGA)n Simple_repeat Simple_repeat 3 128 0 6 957 183 291 0 0 chr4 48825626 48825777 -106804343 + G-rich Low_complexity Low_complexity 3 153 0 6 957 3353 38 2 5 chr4 48826091 48826488 -106803632 - MTA_Mm LTR MaLR 0 396 1 6 957 652 257 0 7 chr4 48826898 48827035 -106803085 + B4A SINE B4 156 291 -1 6 957 270 260 49 59 chr4 48827386 48827488 -106802632 + PB1D10 SINE Alu 1 101 -16 6 957 450 308 38 0 chr4 48827665 48827798 -106802322 + RSINE1 SINE B4 3 140 -25 6 957 305 309 79 19 chr4 48827881 48828095 -106802025 - L1MEc LINE L1 -4964 1436 1210 6 957 432 0 0 0 chr4 48828266 48828314 -106801806 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 6 957 1618 163 47 32 chr4 48828314 48828656 -106801464 - Lx4B LINE L1 -10 7048 6702 6 957 566 298 23 27 chr4 48829077 48829298 -106800822 + Charlie10 DNA MER1_type 1159 1378 -1444 6 957 334 232 84 0 chr4 48829412 48829426 -106800694 - B4A SINE B4 0 292 279 6 957 411 21 0 0 chr4 48829426 48829474 -106800646 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 957 334 232 84 0 chr4 48829474 48829554 -106800566 - B4A SINE B4 -14 278 191 6 957 826 157 97 25 chr4 48829565 48829761 -106800359 - ORR1C2 LTR MaLR -1 383 174 6 957 243 0 0 0 chr4 48829764 48829791 -106800329 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 957 441 0 0 0 chr4 48829791 48829839 -106800281 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 957 551 302 16 16 chr4 48829846 48830031 -106800089 - B4A SINE B4 -107 185 1 6 957 432 0 0 0 chr4 48830577 48830625 -106799495 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 957 945 249 79 31 chr4 48830625 48830915 -106799205 - Lx8 LINE L1 -34 7439 7136 6 957 240 292 117 55 chr4 48831129 48831292 -106798828 - MLT1B LTR MaLR -217 173 1 6 957 249 336 19 28 chr4 48831993 48832100 -106798020 - MLT1A LTR MaLR -268 106 1 6 957 216 0 0 0 chr4 48832451 48832475 -106797645 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 6 957 423 271 73 29 chr4 48833539 48833676 -106796444 + B1F1 SINE Alu 1 143 -6 6 957 528 212 139 0 chr4 48833687 48833824 -106796296 + ID_B1 SINE B4 3 158 -66 6 957 1154 222 95 38 chr4 48833827 48834312 -106795808 - RMER2 LTR ERV1 -4 563 5 6 957 1156 63 0 0 chr4 48834359 48834502 -106795618 + B1_Mm SINE Alu 5 147 0 6 957 268 200 20 0 chr4 48834678 48834728 -106795392 - MIRm SINE MIR -6 270 220 6 957 1442 245 19 16 chr4 48835593 48835966 -106794154 - MTE2b LTR MaLR -1 378 5 6 957 1446 159 27 222 chr4 48836579 48837056 -106793064 + ORR1C2 LTR MaLR 1 384 0 6 957 274 358 9 18 chr4 48837692 48837803 -106792317 - PB1D10 SINE Alu -3 114 5 6 957 815 283 61 55 chr4 48838023 48838352 -106791768 - ORR1E LTR MaLR -22 337 7 6 957 241 375 57 0 chr4 48840027 48840115 -106790005 - B1F SINE Alu -56 93 1 6 957 576 285 41 20 chr4 48840115 48840197 -106789923 - B4 SINE B4 -207 85 1 6 957 434 284 73 28 chr4 48840508 48840794 -106789326 - L1MC5 LINE L1 -386 7575 7277 6 957 294 329 95 20 chr4 48843949 48843998 -106786122 - L1M4 LINE L1 -1244 4902 4852 6 957 1858 135 102 14 chr4 48843998 48844351 -106785769 + ORR1C2 LTR MaLR 1 384 0 6 957 340 301 113 8 chr4 48844351 48844600 -106785520 - L1M4 LINE L1 -1295 4851 4577 6 957 1975 292 88 29 chr4 48844757 48845628 -106784492 - Lx8 LINE L1 -463 7010 6088 6 957 970 274 55 62 chr4 48845657 48846077 -106784043 - MTD LTR MaLR -2 417 1 6 957 554 288 82 50 chr4 48847978 48848259 -106781861 - Lx8 LINE L1 -60 7413 7124 6 957 21 0 0 0 chr4 48848576 48848597 -106781523 + AT_rich Low_complexity Low_complexity 1 21 0 6 957 702 109 0 30 chr4 48848597 48848729 -106781391 - Lx3A LINE L1 -7 6974 6847 6 957 289 297 76 25 chr4 48848834 48849031 -106781089 - L1M4 LINE L1 -2236 3910 3704 6 957 666 352 78 46 chr4 48849109 48849322 -106780798 - B4 SINE B4 0 292 80 6 957 1089 42 0 0 chr4 48849322 48849465 -106780655 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 6 957 666 352 78 46 chr4 48849465 48849534 -106780586 - B4 SINE B4 -213 79 1 6 957 1118 124 6 17 chr4 48849820 48849978 -106780142 + B2_Mm1t SINE B2 1 158 -35 6 957 324 0 0 0 chr4 48849978 48850014 -106780106 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 957 1118 124 6 17 chr4 48850014 48850036 -106780084 + B2_Mm1t SINE B2 159 179 -14 6 957 186 271 0 20 chr4 48851543 48851592 -106778528 + L2c LINE L2 3323 3370 -17 6 957 364 259 16 104 chr4 48852471 48852596 -106777524 + MLT1D LTR MaLR 1 114 -391 6 957 769 129 126 22 chr4 48852642 48852777 -106777343 + B1_Mur2 SINE Alu 1 149 0 6 957 309 109 0 0 chr4 48852789 48852835 -106777285 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 6 957 538 331 82 40 chr4 48852849 48853201 -106776919 + MLT1D LTR MaLR 127 493 -12 6 957 372 255 125 163 chr4 48854366 48854661 -106775459 + B4A SINE B4 1 284 -8 6 957 333 0 0 0 chr4 48854719 48854756 -106775364 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 957 599 293 0 14 chr4 48855076 48855218 -106774902 - ID_B1 SINE B4 -2 222 83 6 957 423 214 0 13 chr4 48855219 48855304 -106774816 - MIR SINE MIR -102 160 84 6 957 239 29 57 0 chr4 48855443 48855478 -106774642 + (TATG)n Simple_repeat Simple_repeat 4 40 0 6 957 300 310 119 31 chr4 48855875 48856068 -106774052 + MER20 DNA MER1_type 1 210 -9 6 957 34049 64 6 7 chr4 48856840 48862985 -106767135 - L1Md_F3 LINE L1 0 6584 452 6 957 36040 31 13 19 chr4 48863017 48867504 -106762616 + L1Md_A LINE L1 441 4933 -1649 6 957 240 150 46 77 chr4 48867504 48867569 -106762551 - RMER20A LTR ERVK -268 248 186 6 957 36040 31 13 19 chr4 48867569 48868558 -106761562 + L1Md_A LINE L1 4934 5925 -657 6 957 836 193 148 0 chr4 48868570 48868746 -106761374 - B3 SINE B2 -14 202 1 6 957 792 24 92 0 chr4 48868861 48869025 -106761095 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 957 265 219 0 27 chr4 48869309 48869384 -106760736 + GA-rich Low_complexity Low_complexity 2 74 0 6 957 605 276 25 45 chr4 48869387 48869588 -106760532 + B3A SINE B2 1 197 -1 6 957 242 338 0 0 chr4 48869600 48869668 -106760452 + ID4 SINE ID 2 69 -14 6 957 233 196 18 0 chr4 48869684 48869740 -106760380 + GA-rich Low_complexity Low_complexity 5 61 0 7 957 307 279 107 0 chr4 48870723 48870845 -106759275 - L1ME4a LINE L1 0 6124 5990 7 957 537 58 0 0 chr4 48870856 48870925 -106759195 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 957 242 154 44 37 chr4 48870945 48871080 -106759040 + (CAGAGA)n Simple_repeat Simple_repeat 3 138 0 7 957 222 207 41 0 chr4 48871084 48871205 -106758915 + (CAGA)n Simple_repeat Simple_repeat 1 126 0 7 957 370 186 6 43 chr4 48871176 48871339 -106758781 + (CAGAGA)n Simple_repeat Simple_repeat 6 162 0 7 957 324 0 0 0 chr4 48871606 48871642 -106758478 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 957 2497 107 40 2 chr4 48872055 48872457 -106757663 + Lx LINE L1 6217 6633 -21 7 957 244 321 0 0 chr4 48873113 48873183 -106756937 + PB1D10 SINE Alu 6 75 -74 7 957 205 342 0 14 chr4 48873184 48873258 -106756862 + GA-rich Low_complexity Low_complexity 3 75 0 7 957 324 0 0 0 chr4 48873405 48873441 -106756679 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 957 405 0 0 0 chr4 48873505 48873550 -106756570 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 957 333 0 0 0 chr4 48873825 48873862 -106756258 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 957 1445 90 24 0 chr4 48873925 48874137 -106755983 - L1_Mus3 LINE L1 -7 6631 6415 7 957 353 329 153 28 chr4 48874290 48874680 -106755440 + L1ME2 LINE L1 5423 5873 -311 7 957 234 359 112 23 chr4 48875412 48875803 -106754317 + L2 LINE L2 2437 2862 -557 7 957 278 233 23 23 chr4 48875843 48875931 -106754189 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 957 317 199 21 28 chr4 48875948 48876093 -106754027 + (TG)n Simple_repeat Simple_repeat 2 145 0 7 957 421 270 50 34 chr4 48876109 48876228 -106753892 - RSINE1 SINE B4 0 165 45 7 957 17835 88 1 5 chr4 48876228 48879530 -106750590 - L1VL1 LINE L1 -1951 3932 643 7 957 691 140 0 0 chr4 48879531 48879638 -106750482 - L1VL1 LINE L1 -6131 507 401 7 957 231 267 94 141 chr4 48880646 48880838 -106749282 - B3A SINE B2 -6 192 10 7 957 634 275 14 0 chr4 48880698 48880840 -106749280 - RSINE1 SINE B4 -13 152 9 7 957 7176 20 0 0 chr4 48880851 48881711 -106748409 - L1Md_A LINE L1 0 6582 5723 7 957 1026 77 51 0 chr4 48881704 48881860 -106748260 - L1Md_A LINE L1 -6139 585 422 7 957 303 130 0 0 chr4 48882495 48882549 -106747571 + (TATG)n Simple_repeat Simple_repeat 4 57 0 7 957 905 153 21 0 chr4 48882729 48882873 -106747247 + B1_Mus1 SINE Alu 2 148 0 7 957 727 292 0 44 chr4 48884069 48884295 -106745825 - L3 LINE CR1 -3350 1139 924 7 957 180 0 0 0 chr4 48884312 48884332 -106745788 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 7 957 37 0 0 0 chr4 48884559 48884596 -106745524 + AT_rich Low_complexity Low_complexity 1 37 0 7 957 4960 6 0 0 chr4 48885602 48886150 -106743970 + L1Md_A LINE L1 6034 6581 -1 7 957 21 0 0 0 chr4 48886150 48886171 -106743949 + AT_rich Low_complexity Low_complexity 1 21 0 7 957 216 97 0 0 chr4 48886367 48886398 -106743722 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 957 2159 150 56 0 chr4 48886712 48887071 -106743049 + RMER6D LTR ERVK 1 379 -341 7 119 13665 169 24 18 chr4 48887071 48891073 -106739047 - Lx5 LINE L1 -1100 5950 817 7 958 1690 209 46 163 chr4 48891218 48891944 -106738176 - RMER19C LTR ERVK -33 704 1 7 958 294 29 0 0 chr4 48891976 48892011 -106738109 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 958 849 104 23 23 chr4 48892011 48892188 -106737932 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 7 958 539 217 58 77 chr4 48892192 48892347 -106737773 - RSINE1 SINE B4 -10 155 4 7 958 382 167 30 0 chr4 48892347 48892413 -106737707 + MLT1C LTR MaLR 400 467 0 7 958 280 304 11 21 chr4 48892668 48892762 -106737358 - PB1D9 SINE Alu 0 120 28 7 958 436 289 99 75 chr4 48892999 48893308 -106736812 + ORR1E LTR MaLR 31 312 -58 7 958 1082 141 136 0 chr4 48893308 48893506 -106736614 + URR1A DNA MER1_type 2 226 0 7 958 286 349 48 123 chr4 48893506 48893541 -106736579 + ORR1E LTR MaLR 313 350 -20 7 958 281 312 17 52 chr4 48893566 48893681 -106736439 - LTR33B LTR ERVL 0 520 410 7 958 322 360 46 58 chr4 48893852 48894026 -106736094 - LTR33B LTR ERVL -326 177 6 7 958 345 24 0 0 chr4 48894689 48894731 -106735389 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 958 772 270 23 14 chr4 48895098 48895312 -106734808 - B3 SINE B2 0 216 1 7 958 200 35 35 0 chr4 48895346 48895375 -106734745 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 958 548 214 77 0 chr4 48895428 48895553 -106734567 + B1F1 SINE Alu 9 148 -1 7 958 182 119 0 45 chr4 48895553 48895597 -106734523 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 958 705 301 100 4 chr4 48895606 48895866 -106734254 + B4A SINE B4 1 285 -7 7 958 516 32 0 0 chr4 48895894 48895956 -106734164 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 958 23 0 0 0 chr4 48895957 48895980 -106734140 + AT_rich Low_complexity Low_complexity 1 23 0 7 958 811 270 50 5 chr4 48896054 48896255 -106733865 + B3 SINE B2 1 210 -6 7 958 317 336 123 35 chr4 48896346 48896574 -106733546 + L1M5 LINE L1 5531 5778 -462 7 958 9223 119 21 2 chr4 48897271 48899364 -106730756 - Lx2 LINE L1 -3 6994 4859 7 958 852 300 40 40 chr4 48899908 48900182 -106729938 - B4 SINE B4 -18 274 1 7 958 3278 21 39 0 chr4 48900182 48900563 -106729557 + MTA_Mm LTR MaLR 1 396 0 7 958 357 312 11 116 chr4 48902655 48902836 -106727284 + RSINE1 SINE B4 4 165 0 7 958 462 208 0 0 chr4 48902840 48902994 -106727126 + (CA)n Simple_repeat Simple_repeat 1 154 0 7 958 1507 215 89 21 chr4 48903015 48903384 -106726736 + RMER19B LTR ERVK 126 664 -238 7 958 852 260 41 49 chr4 48903983 48904250 -106725870 - MTEa LTR MaLR 0 379 115 7 958 4860 25 2 2 chr4 48904406 48904973 -106725147 - L1Md_F3 LINE L1 -2 6582 6016 7 958 236 349 39 50 chr4 48905541 48905722 -106724398 + L2a LINE L2 2700 2878 -541 7 958 200 273 72 93 chr4 48906012 48906109 -106724011 + L2a LINE L2 3332 3426 0 7 958 25 0 0 0 chr4 48906254 48906279 -106723841 + AT_rich Low_complexity Low_complexity 1 25 0 7 958 503 315 57 21 chr4 48907129 48907408 -106722712 + B4A SINE B4 2 290 -2 7 958 267 31 0 0 chr4 48907424 48907456 -106722664 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 958 324 147 0 0 chr4 48907492 48907567 -106722553 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 7 958 312 296 55 18 chr4 48907716 48907826 -106722294 - B1F1 SINE Alu -34 115 2 7 958 1597 39 1 1 chr4 48908539 48908766 -106721354 + L1_Mm LINE L1 4976 5201 -685 7 958 639 327 81 4 chr4 48909075 48909333 -106720787 + MER2 DNA MER2_type 1 278 -67 7 958 1955 267 60 44 chr4 48909878 48910834 -106719286 + RMER1A Other Other 3 479 -587 7 958 3011 253 128 16 chr4 48910890 48911533 -106718587 + RMER1A Other Other 1 703 -327 7 958 4780 158 53 20 chr4 48911533 48912412 -106717708 - RMER13B LTR ERVK 0 908 1 7 958 3011 253 128 16 chr4 48912412 48912680 -106717440 + RMER1A Other Other 704 1014 -16 7 958 337 330 102 44 chr4 48913026 48913321 -106716799 + L2a LINE L2 3039 3350 -76 7 958 189 0 0 0 chr4 48913941 48913962 -106716158 + (T)n Simple_repeat Simple_repeat 1 21 0 7 958 375 366 156 6 chr4 48914003 48914549 -106715571 - L2 LINE L2 -556 2863 2236 7 958 1833 67 70 18 chr4 48914934 48915206 -106714914 - L1_Mus1 LINE L1 0 6567 6282 7 958 213 39 0 0 chr4 48915299 48915325 -106714795 + (CCA)n Simple_repeat Simple_repeat 1 26 0 7 958 180 111 0 0 chr4 48915325 48915352 -106714768 + (CAG)n Simple_repeat Simple_repeat 3 29 0 7 958 3350 67 30 0 chr4 48915672 48916104 -106714016 - L1_Mus1 LINE L1 -6 6561 6117 7 958 3863 81 19 8 chr4 48916175 48916710 -106713410 + L1Md_F2 LINE L1 6042 6582 0 7 958 531 0 0 0 chr4 48916740 48916799 -106713321 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 958 433 288 39 28 chr4 48918569 48918755 -106711365 - MLT1A0 LTR MaLR 0 467 236 7 958 294 253 40 13 chr4 48918794 48918870 -106711250 - MLT1A0 LTR MaLR -296 78 1 7 958 735 232 7 0 chr4 48919089 48919231 -106710889 - ORR1D1 LTR MaLR -229 145 3 7 958 357 279 29 0 chr4 48919552 48919656 -106710464 + B1F2 SINE Alu 2 108 -41 7 958 1299 214 32 161 chr4 48919678 48920056 -106710064 - ORR1D1 LTR MaLR 0 374 46 7 958 212 287 57 38 chr4 48921784 48921889 -106708231 - MIR SINE MIR -29 233 127 7 958 675 354 84 57 chr4 48922222 48922675 -106707445 - LTR78 LTR ERV1 -99 1205 741 7 958 3014 55 8 0 chr4 48922953 48923352 -106706768 - L1_Mus1 LINE L1 -526 6041 5640 7 958 4085 54 2 13 chr4 48923352 48923875 -106706245 + L1_Mus1 LINE L1 6050 6566 -1 7 958 307 333 94 21 chr4 48924913 48925201 -106704919 + L1M4 LINE L1 4396 4704 -1442 7 958 261 263 41 41 chr4 48925644 48925767 -106704353 + L1MA5 LINE L1 6171 6293 -7 7 958 2875 194 158 110 chr4 48925788 48926761 -106703359 - RMER1B Other Other -4 1062 43 7 958 29 47 0 0 chr4 48926964 48927007 -106703113 + AT_rich Low_complexity Low_complexity 1 43 0 7 958 777 195 114 0 chr4 48927405 48927641 -106702479 - L1MA6 LINE L1 -21 6279 6017 7 958 264 250 83 0 chr4 48927699 48927795 -106702325 + Charlie21a DNA MER1_type 906 1009 -204 7 958 338 311 25 0 chr4 48927953 48928072 -106702048 - MER3 DNA MER1_type 0 209 88 7 958 186 224 0 0 chr4 48928634 48928683 -106701437 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 958 283 331 50 66 chr4 48928752 48928933 -106701187 - MLT1K LTR MaLR -15 580 403 7 958 1238 54 0 0 chr4 48929094 48929242 -106700878 - B1_Mus1 SINE Alu 0 148 1 7 958 1165 172 51 20 chr4 48929533 48929682 -106700438 + Lx9 LINE L1 7339 7487 -157 7 958 915 67 65 29 chr4 48929682 48929820 -106700300 + B1_Mus1 SINE Alu 1 143 -5 7 958 1165 172 51 20 chr4 48929820 48929966 -106700154 + Lx9 LINE L1 7488 7642 -2 7 958 21 36 0 0 chr4 48930148 48930176 -106699944 + AT_rich Low_complexity Low_complexity 1 28 0 7 958 3178 54 0 0 chr4 48930472 48930879 -106699241 - L1_Mus1 LINE L1 -194 6373 5967 8 958 1282 31 31 0 chr4 48930879 48931039 -106699081 + L1_Mus1 LINE L1 6403 6567 0 8 958 8004 150 79 9 chr4 48931078 48931337 -106698783 - RLTR21 LTR ERVK 0 1572 1297 8 958 414 0 0 0 chr4 48931337 48931383 -106698737 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 958 8004 150 79 9 chr4 48931383 48932593 -106697527 - RLTR21 LTR ERVK -276 1296 2 8 958 463 349 80 44 chr4 48932642 48933193 -106696927 + HERV16-int LTR ERVL 145 715 -4281 8 958 239 192 62 25 chr4 48933462 48933542 -106696578 + Lx6 LINE L1 7351 7433 -27 8 958 1995 149 65 3 chr4 48934088 48934444 -106695676 + ORR1C1 LTR MaLR 1 378 0 8 958 27 29 0 0 chr4 48934571 48934605 -106695515 + AT_rich Low_complexity Low_complexity 1 34 0 8 958 1476 261 76 16 chr4 48935121 48935620 -106694500 - Lx8 LINE L1 -101 7372 6844 8 958 239 331 72 26 chr4 48936515 48936667 -106693453 + MIRb SINE MIR 33 191 -77 8 958 282 351 109 9 chr4 48937030 48937240 -106692880 + MIR SINE MIR 2 236 -32 8 958 949 93 0 74 chr4 48938011 48938173 -106691947 - L1Md_F2 LINE L1 -1 6581 6432 8 958 1949 196 52 10 chr4 48938683 48939085 -106691035 + MTC LTR MaLR 1 419 -2 8 958 231 382 68 32 chr4 48939508 48939757 -106690363 + L2a LINE L2 3088 3345 -81 8 958 359 321 0 0 chr4 48939769 48939878 -106690242 - PB1D10 SINE Alu -6 111 3 8 958 877 128 6 13 chr4 48940259 48940417 -106689703 + (TCTA)n Simple_repeat Simple_repeat 1 157 0 8 958 234 347 0 27 chr4 48940813 48940887 -106689233 - RSINE1 SINE B4 -15 150 79 8 958 278 280 64 47 chr4 48940953 48941095 -106689025 - B4A SINE B4 -140 152 24 8 958 469 322 19 38 chr4 48941316 48941468 -106688652 - L1MCc LINE L1 -5994 429 279 8 958 4201 107 5 0 chr4 48941468 48942049 -106688071 - MT2B2 LTR ERVL 0 584 1 8 958 469 322 19 38 chr4 48942049 48942109 -106688011 - L1MCc LINE L1 -6145 278 221 8 958 561 331 87 52 chr4 48942170 48942517 -106687603 - ORR1E LTR MaLR 0 359 1 8 958 284 274 28 47 chr4 48942858 48942965 -106687155 - L1MEd LINE L1 -5405 714 610 8 958 1017 279 69 49 chr4 48943476 48943725 -106686395 - L1MA8 LINE L1 -5 6286 6021 8 958 2664 34 27 126 chr4 48943725 48944130 -106685990 - RLTR10B2 LTR ERVK 0 365 1 8 958 1002 280 69 49 chr4 48944130 48944534 -106685586 - L1MA8 LINE L1 -271 6020 5620 8 958 3456 83 4 2 chr4 48944534 48945006 -106685114 + L1_Mus1 LINE L1 6094 6566 -1 8 958 330 26 0 0 chr4 48945025 48945064 -106685056 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 958 1138 209 9 76 chr4 48945074 48945415 -106684705 - L1MA8 LINE L1 -1816 4327 4010 8 958 346 324 151 46 chr4 48946933 48947192 -106682928 - B4A SINE B4 -6 286 1 8 958 657 0 0 0 chr4 48947239 48947312 -106682808 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 8 958 245 405 26 18 chr4 48947491 48947604 -106682516 - MER5B DNA MER1_type -63 115 2 8 958 209 377 33 33 chr4 48949241 48949392 -106680728 + MIRb SINE MIR 47 197 -71 8 958 26 30 0 0 chr4 48949849 48949882 -106680238 + AT_rich Low_complexity Low_complexity 1 33 0 8 958 266 186 12 0 chr4 48949884 48949970 -106680150 + CT-rich Low_complexity Low_complexity 2 88 0 8 958 261 0 0 0 chr4 48949972 48950001 -106680119 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 958 624 257 29 7 chr4 48950003 48950140 -106679980 - RSINE1 SINE B4 -24 141 2 8 958 809 121 109 43 chr4 48950870 48951008 -106679112 - B1_Mus1 SINE Alu 0 148 2 8 958 534 202 23 39 chr4 48951442 48951571 -106678549 - MTD LTR MaLR -18 401 275 8 958 324 131 6 0 chr4 48951578 48951643 -106678477 + ERVL-B4-int LTR ERVL 4451 4521 -964 8 958 502 345 30 30 chr4 48951647 48951880 -106678240 - MTD LTR MaLR -168 251 19 8 958 1378 220 124 26 chr4 48953564 48953942 -106676178 + MTD LTR MaLR 5 419 0 8 958 644 325 62 65 chr4 48954103 48954439 -106675681 + ORR1E LTR MaLR 4 338 -21 8 958 468 0 0 0 chr4 48955695 48955747 -106674373 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 958 252 0 0 0 chr4 48955747 48955774 -106674346 + (CG)n Simple_repeat Simple_repeat 1 28 0 8 958 1022 300 32 0 chr4 48955802 48956079 -106674041 - B4A SINE B4 -2 290 5 8 958 21 0 0 0 chr4 48956345 48956366 -106673754 + AT_rich Low_complexity Low_complexity 1 21 0 8 958 530 338 191 4 chr4 48959410 48959651 -106670469 - B4 SINE B4 -5 287 2 8 958 668 274 50 15 chr4 48960507 48960707 -106669413 - B3 SINE B2 -6 210 4 8 958 464 238 28 9 chr4 48960979 48961085 -106669035 + RMER20B LTR ERVK 1 108 -519 8 958 260 298 45 91 chr4 48961168 48961367 -106668753 + RMER20B LTR ERVK 327 516 0 8 958 306 0 0 0 chr4 48961744 48961778 -106668342 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 958 333 297 112 35 chr4 48961825 48961968 -106668152 - MER63A DNA AcHobo -45 165 12 8 958 249 135 0 0 chr4 48962297 48962349 -106667771 + (A)n Simple_repeat Simple_repeat 1 52 0 8 958 396 97 0 0 chr4 48962353 48962415 -106667705 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 8 958 659 65 11 0 chr4 48962550 48962643 -106667477 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 8 958 366 286 127 14 chr4 48962964 48963106 -106667014 - MER45A DNA Tip100 -11 167 10 8 958 270 0 0 0 chr4 48964754 48964784 -106665336 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 958 851 231 109 119 chr4 48965100 48965420 -106664700 - MTE2a LTR MaLR -62 317 1 8 958 808 305 152 37 chr4 48965854 48966258 -106663862 - MLT2B1 LTR ERVL -6 550 62 8 958 414 351 50 40 chr4 48967338 48967537 -106662583 + MER63A DNA AcHobo 7 207 -3 8 958 25 0 0 0 chr4 48969566 48969591 -106660529 + AT_rich Low_complexity Low_complexity 1 25 0 8 958 222 339 0 0 chr4 48970232 48970347 -106659773 + T-rich Low_complexity Low_complexity 1 115 0 8 958 594 116 21 0 chr4 48970347 48970442 -106659678 - PB1D9 SINE Alu 0 120 24 8 958 297 256 72 0 chr4 48970553 48970678 -106659442 - L1MA6 LINE L1 -133 6158 6025 8 958 636 279 43 46 chr4 48970696 48971068 -106659052 - L1MA6 LINE L1 -373 5927 5557 8 958 289 316 61 5 chr4 48971068 48971265 -106658855 - L1MA5 LINE L1 -342 5958 5751 8 958 357 246 66 80 chr4 48971273 48971485 -106658635 - L1MA5 LINE L1 -768 5523 5315 8 958 3340 98 25 2 chr4 48971489 48971970 -106658150 - L1_Mus3 LINE L1 -7 6631 6140 8 958 569 283 51 32 chr4 48971972 48972345 -106657775 - L1MA5 LINE L1 -816 5327 4948 8 958 415 237 160 21 chr4 48972366 48972560 -106657560 - Lx8 LINE L1 -39 7434 7214 8 958 889 290 64 19 chr4 48972551 48972945 -106657175 - Lx7 LINE L1 -1478 5995 5589 8 958 263 333 26 39 chr4 48973047 48973125 -106656995 - ID4_ SINE ID -5 78 2 8 958 332 182 127 0 chr4 48973130 48973240 -106656880 - L1MA5 LINE L1 -1513 4630 4497 8 958 2423 229 28 50 chr4 48973253 48974011 -106656109 - L1MA5 LINE L1 -1704 4439 3699 8 958 225 94 0 0 chr4 48974140 48974172 -106655948 + (TCC)n Simple_repeat Simple_repeat 2 33 0 8 958 225 242 76 81 chr4 48974310 48974508 -106655612 - L1MA5 LINE L1 -3141 3002 2806 8 958 213 274 0 0 chr4 48975162 48975257 -106654863 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 958 232 311 48 10 chr4 48976968 48977072 -106653048 + MLT1L LTR MaLR 503 610 0 8 958 1267 72 0 11 chr4 48977261 48977443 -106652677 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 8 958 7851 48 1 0 chr4 48978449 48979495 -106650625 - L1Md_F2 LINE L1 -2 6580 5534 8 958 646 232 68 5 chr4 48980417 48980552 -106649568 + RSINE1 SINE B4 3 143 -22 8 958 3256 58 84 11 chr4 48981522 48981962 -106648158 + L1Md_F2 LINE L1 6101 6572 -10 8 958 1831 308 121 20 chr4 48982031 48982882 -106647238 + Lx7 LINE L1 6364 7300 -396 8 958 1283 58 12 0 chr4 48982919 48983091 -106647029 + (TCTCC)n Simple_repeat Simple_repeat 2 175 0 8 958 360 0 0 0 chr4 48983092 48983132 -106646988 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 958 3818 160 17 232 chr4 48984366 48985644 -106644476 - RMER21A LTR ERV1 0 947 18 8 958 2092 226 48 4 chr4 48986197 48986651 -106643469 + Lx5 LINE L1 6480 6953 -97 8 958 417 161 0 0 chr4 48986653 48986740 -106643380 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 8 958 309 109 47 0 chr4 48986783 48986847 -106643273 + GA-rich Low_complexity Low_complexity 1 67 0 8 958 723 291 79 17 chr4 48987472 48987713 -106642407 + B4A SINE B4 1 256 -36 8 958 2757 128 216 34 chr4 48987770 48988437 -106641683 + Lx2B LINE L1 6208 6996 -4 8 958 226 26 25 50 chr4 48989590 48989630 -106640490 + (TCTCTG)n Simple_repeat Simple_repeat 3 41 0 8 958 353 283 14 68 chr4 48989747 48989895 -106640225 - Lx7 LINE L1 -584 7112 6973 8 958 396 0 0 0 chr4 48989907 48989951 -106640169 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 958 512 315 60 43 chr4 48989953 48990255 -106639865 - Lx7 LINE L1 -417 7279 6973 8 958 427 82 27 0 chr4 48990267 48990340 -106639780 + (TA)n Simple_repeat Simple_repeat 1 75 0 8 958 180 0 0 0 chr4 48990467 48990487 -106639633 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 958 807 255 34 0 chr4 48991578 48991782 -106638338 + B3 SINE B2 1 211 -5 8 958 290 108 40 13 chr4 48992117 48992192 -106637928 + (TA)n Simple_repeat Simple_repeat 2 78 0 8 958 330 348 75 38 chr4 48992707 48992946 -106637174 + MIRb SINE MIR 3 250 -18 8 958 1199 283 56 6 chr4 48994062 48994417 -106635703 + MTEb LTR MaLR 3 375 -4 8 958 4468 301 69 8 chr4 48994425 48995694 -106634426 + MTEb-int LTR MaLR 5 1351 -229 8 958 349 226 63 35 chr4 48995728 48995902 -106634218 - Lx9 LINE L1 -8 7636 7458 8 958 1202 235 29 0 chr4 48995938 48996244 -106633876 - Lx9 LINE L1 -133 7511 7197 8 958 440 0 36 0 chr4 48996244 48996299 -106633821 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 8 958 897 256 39 0 chr4 48996302 48996505 -106633615 + MTEb-int LTR MaLR 1362 1572 -8 8 958 520 288 97 11 chr4 48996505 48996691 -106633429 + MTEb LTR MaLR 1 202 -177 8 958 258 246 0 16 chr4 48996735 48996797 -106633323 + MTEb LTR MaLR 319 379 0 8 958 1616 139 79 10 chr4 48996967 48997272 -106632848 + Lx4B LINE L1 6729 7054 -4 8 958 306 73 0 0 chr4 48997322 48997363 -106632757 + (CAAG)n Simple_repeat Simple_repeat 2 42 0 8 958 27 0 0 0 chr4 48997923 48997950 -106632170 + AT_rich Low_complexity Low_complexity 1 27 0 8 958 504 0 0 0 chr4 48998411 48998467 -106631653 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 958 652 317 100 64 chr4 48998470 48998750 -106631370 - B4A SINE B4 0 292 3 8 958 727 295 74 9 chr4 48998750 48998968 -106631152 - B4A SINE B4 -57 235 3 8 958 5235 50 0 2 chr4 48998983 48999627 -106630493 - L1Md_F2 LINE L1 0 6582 5940 8 958 848 262 128 8 chr4 49000002 49000237 -106629883 + B4A SINE B4 24 286 -6 1 958 342 0 0 0 chr4 49000273 49000311 -106629809 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 958 711 279 30 65 chr4 49002337 49002506 -106627614 - RSINE1 SINE B4 0 165 3 3 958 572 322 74 6 chr4 49002550 49002725 -106627395 - B3A SINE B2 -10 188 2 4 958 29 47 0 0 chr4 49002887 49002930 -106627190 + AT_rich Low_complexity Low_complexity 1 43 0 5 958 252 224 0 0 chr4 49003006 49003073 -106627047 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 958 1219 159 11 29 chr4 49003652 49003891 -106626229 - ORR1B2 LTR MaLR 0 367 148 7 958 207 204 0 0 chr4 49003902 49003946 -106626174 + GA-rich Low_complexity Low_complexity 2 45 0 8 958 878 166 23 58 chr4 49003946 49004119 -106626001 - ORR1B2 LTR MaLR -198 169 3 7 958 29 60 0 0 chr4 49005610 49005660 -106624460 + AT_rich Low_complexity Low_complexity 1 50 0 9 958 450 0 0 0 chr4 49006698 49006748 -106623372 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1 958 1050 132 124 20 chr4 49008281 49008482 -106621638 - URR1A DNA MER1_type 0 226 5 1 958 980 292 131 35 chr4 49009029 49009395 -106620725 + MTD LTR MaLR 19 419 0 1 958 28 48 0 0 chr4 49009905 49009947 -106620173 + AT_rich Low_complexity Low_complexity 1 42 0 1 958 325 399 30 8 chr4 49010504 49010638 -106619482 + RSINE1 SINE B4 11 147 -18 1 958 279 353 43 0 chr4 49011833 49011949 -106618171 + MIRb SINE MIR 38 158 -110 1 958 302 123 18 0 chr4 49012089 49012146 -106617974 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 958 267 289 26 0 chr4 49013525 49013601 -106616519 + ID2 SINE ID 4 81 -2 1 958 466 324 36 7 chr4 49015014 49015154 -106614966 + RSINE1 SINE B4 9 152 -13 1 958 3985 56 2 14 chr4 49015498 49016009 -106614111 - L1Md_F2 LINE L1 -1 6581 6077 1 958 877 203 39 39 chr4 49016275 49016480 -106613640 - B3 SINE B2 -11 205 1 2 958 447 52 0 0 chr4 49016737 49016795 -106613325 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 958 279 169 0 0 chr4 49016798 49016869 -106613251 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 2 958 209 167 19 0 chr4 49016882 49016936 -106613184 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 958 403 301 41 0 chr4 49017201 49017324 -106612796 + B1F1 SINE Alu 1 128 -21 2 958 244 182 0 22 chr4 49018082 49018127 -106611993 - tRNA-Arg-AGA tRNA tRNA -31 45 2 2 958 680 332 32 46 chr4 49018793 49019011 -106611109 - B3A SINE B2 0 216 2 2 958 24 0 0 0 chr4 49019165 49019189 -106610931 + AT_rich Low_complexity Low_complexity 1 24 0 2 958 401 398 12 59 chr4 49019227 49019483 -106610637 + B4A SINE B4 49 292 0 2 958 888 216 151 0 chr4 49019603 49019848 -106610272 - Lx9 LINE L1 -7 7637 7356 2 958 479 322 88 39 chr4 49020544 49020851 -106609269 + L1ME4a LINE L1 5569 5890 -234 3 959 310 300 203 11 chr4 49021015 49021197 -106608923 - B4A SINE B4 -75 217 1 3 959 7689 53 1 1 chr4 49021514 49023060 -106607060 - L1Md_F2 LINE L1 -8 6574 5030 3 959 13227 84 10 23 chr4 49023060 49025781 -106604339 - L1Md_F2 LINE L1 -2785 3098 415 3 959 21 57 0 0 chr4 49025791 49025826 -106604294 + AT_rich Low_complexity Low_complexity 1 35 0 3 959 4532 189 44 32 chr4 49025943 49027169 -106602951 + L1_Mur3 LINE L1 1278 2606 -3271 3 959 553 57 0 0 chr4 49027169 49027239 -106602881 + B1_Mm SINE Alu 69 138 -9 3 959 489 17 0 0 chr4 49027239 49027297 -106602823 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 3 959 207 0 0 0 chr4 49027297 49027319 -106602801 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 959 2927 254 106 84 chr4 49027319 49028263 -106601857 + L1_Mur3 LINE L1 2607 3568 -2309 3 959 3824 102 16 19 chr4 49028264 49028832 -106601288 + L1_Mus3 LINE L1 6066 6631 -7 3 959 3821 212 56 16 chr4 49028849 49029749 -106600371 + Lx7 LINE L1 5816 6751 -945 3 959 932 177 75 12 chr4 49029771 49030011 -106600109 + Lx7 LINE L1 7442 7696 0 3 959 4319 136 39 10 chr4 49030419 49031132 -106598988 - Lx2B LINE L1 -4 6996 6263 4 959 29 0 0 0 chr4 49031498 49031527 -106598593 + AT_rich Low_complexity Low_complexity 1 29 0 4 959 237 316 103 45 chr4 49031592 49031748 -106598372 - MIRc SINE MIR -91 177 13 4 959 365 91 0 0 chr4 49032303 49032358 -106597762 + Lx3B LINE L1 6916 6970 -3 4 959 4104 132 0 2 chr4 49032636 49033243 -106596877 - Lx2A1 LINE L1 -9 6999 6394 4 959 3751 145 19 28 chr4 49034843 49035490 -106594630 + Lx3C LINE L1 6334 6974 -2 4 959 248 350 123 50 chr4 49035923 49036224 -106593896 + LTR78 LTR ERV1 554 876 -428 4 959 273 286 0 23 chr4 49037298 49037384 -106592736 + MLT1D LTR MaLR 96 179 -326 4 959 252 0 0 0 chr4 49037391 49037419 -106592701 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 959 588 345 109 19 chr4 49037466 49037478 -106592642 - B4A SINE B4 -3 289 279 4 959 261 57 0 0 chr4 49037478 49037513 -106592607 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 959 588 345 109 19 chr4 49037513 49037757 -106592363 - B4A SINE B4 -14 278 10 4 959 1204 305 77 39 chr4 49039302 49039964 -106590156 + Lx8 LINE L1 6593 7279 -194 5 959 35672 31 19 22 chr4 49040240 49041887 -106588233 - L1Md_T LINE L1 -1 6581 4914 5 959 226 283 31 61 chr4 49041887 49041985 -106588135 + RMER20A LTR ERVK 186 280 -236 5 959 35672 31 19 22 chr4 49041985 49046396 -106583724 - L1Md_T LINE L1 -1 4913 445 5 959 223 186 0 0 chr4 49046409 49046452 -106583668 + A-rich Low_complexity Low_complexity 4 46 0 5 959 309 390 109 52 chr4 49046879 49047228 -106582892 + L1MEg LINE L1 195 563 -5679 5 959 333 281 12 3 chr4 49047244 49047343 -106582777 + MLT1B LTR MaLR 1 98 -369 5 959 742 313 50 23 chr4 49047344 49047740 -106582380 + L1MEg LINE L1 3059 3465 -2681 5 959 2332 166 12 4 chr4 49048325 49048797 -106581323 - L1MA5 LINE L1 -303 5997 5487 5 959 821 172 107 39 chr4 49048797 49048937 -106581183 + L1_Mur2 LINE L1 5288 5439 -438 5 959 216 0 0 0 chr4 49048937 49048961 -106581159 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 959 821 172 107 39 chr4 49048961 49049026 -106581094 + L1_Mur2 LINE L1 5440 5507 -370 5 959 36 0 0 0 chr4 49049558 49049594 -106580526 + AT_rich Low_complexity Low_complexity 1 36 0 6 959 194 174 22 0 chr4 49050135 49050181 -106579939 + CT-rich Low_complexity Low_complexity 1 47 0 6 959 405 0 0 0 chr4 49051028 49051073 -106579047 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 959 1671 240 73 146 chr4 49051198 49052164 -106577956 + RMER13B LTR ERVK 2 897 -11 6 959 351 0 0 0 chr4 49052182 49052221 -106577899 + (TATG)n Simple_repeat Simple_repeat 3 41 0 6 959 681 161 36 0 chr4 49053187 49053355 -106576765 + CT-rich Low_complexity Low_complexity 3 176 0 6 959 233 295 33 0 chr4 49053400 49053461 -106576659 - tRNA-Ala-GCA tRNA tRNA -12 63 1 6 959 373 252 118 24 chr4 49053726 49053853 -106576267 - MLT1A1 LTR MaLR -16 392 211 6 959 333 281 48 0 chr4 49053871 49054002 -106576118 - MLT1A1 LTR MaLR -224 141 1 6 959 337 302 41 91 chr4 49054020 49054284 -106575836 - L2c LINE L2 -135 3240 2990 6 959 227 211 68 27 chr4 49055161 49055234 -106574886 - MLT1K LTR MaLR -31 564 489 6 959 234 0 0 0 chr4 49055482 49055508 -106574612 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 959 659 309 16 66 chr4 49055891 49056196 -106573924 + B4A SINE B4 3 292 0 7 959 585 28 0 0 chr4 49056225 49056296 -106573824 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 959 510 103 0 0 chr4 49056298 49056385 -106573735 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 959 37560 56 1 1 chr4 49056523 49062526 -106567594 - L1Md_F3 LINE L1 -15 6569 607 7 959 3724 91 11 10 chr4 49062841 49063361 -106566759 - L1_Mus4 LINE L1 -293 6343 5823 7 959 1673 149 36 62 chr4 49063361 49063698 -106566422 - ORR1C1 LTR MaLR -50 328 1 7 959 736 326 87 32 chr4 49063761 49064198 -106565922 + L1MB3 LINE L1 5454 5914 -269 7 959 183 42 0 0 chr4 49064431 49064455 -106565665 + (TTAG)n Simple_repeat Simple_repeat 2 25 0 7 959 870 150 94 0 chr4 49064612 49064772 -106565348 - L1_Mur1 LINE L1 -725 5161 4987 7 959 4215 124 34 0 chr4 49064772 49065399 -106564721 + L1_Mm LINE L1 5171 5818 -65 8 959 870 256 10 0 chr4 49065513 49065708 -106564412 - B3 SINE B2 -6 210 14 8 959 369 129 0 0 chr4 49065751 49065821 -106564299 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 959 857 262 35 0 chr4 49065823 49066025 -106564095 - B3 SINE B2 -5 211 3 8 959 1592 252 72 18 chr4 49066094 49066718 -106563402 - L1M4 LINE L1 -920 5226 4544 8 959 533 290 96 6 chr4 49067262 49067439 -106562681 + MER58A DNA MER1_type 4 196 -28 8 959 186 71 0 0 chr4 49067526 49067554 -106562566 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 959 1374 222 43 49 chr4 49067797 49068166 -106561954 - ORR1D1 LTR MaLR 0 374 8 8 959 427 308 52 11 chr4 49069307 49069563 -106560557 + L1MA4 LINE L1 5712 5972 -1672 8 959 447 320 0 16 chr4 49070394 49070518 -106559602 + RSINE1 SINE B4 2 123 -42 8 959 212 59 29 0 chr4 49072295 49072329 -106557791 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 959 192 270 42 125 chr4 49075154 49075298 -106554822 - L2c LINE L2 -172 3215 3084 9 959 3623 31 2 0 chr4 49076589 49077011 -106553109 + L1Md_T LINE L1 6160 6582 0 9 959 244 64 21 21 chr4 49077843 49077891 -106552229 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 9 959 1162 48 7 7 chr4 49077891 49078037 -106552083 - B1_Mm SINE Alu 0 147 2 9 959 213 39 0 0 chr4 49078284 49078310 -106551810 + (CAT)n Simple_repeat Simple_repeat 2 27 0 9 959 232 343 18 36 chr4 49078323 49078351 -106551769 + MIR SINE MIR 19 47 -161 9 959 418 324 35 0 chr4 49078351 49078493 -106551627 - RSINE1 SINE B4 -15 150 4 9 959 310 249 1 50 chr4 49078493 49078576 -106551544 + MIR SINE MIR 48 127 -81 9 959 430 151 28 0 chr4 49078591 49078697 -106551423 + Lx LINE L1 6545 6653 -1 9 959 225 195 0 0 chr4 49079287 49079328 -106550792 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 9 959 189 0 0 0 chr4 49079984 49080005 -106550115 + (C)n Simple_repeat Simple_repeat 1 21 0 1 959 184 302 19 0 chr4 49080287 49080340 -106549780 - MIR3 SINE MIR -21 187 134 1 959 189 308 25 37 chr4 49080679 49080760 -106549360 - MIR SINE MIR -55 153 74 1 959 203 0 0 36 chr4 49081643 49081671 -106548449 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 959 246 359 27 14 chr4 49082236 49082383 -106547737 - MIRc SINE MIR -115 153 5 1 959 1336 131 4 43 chr4 49083041 49083297 -106546823 + Lx LINE L1 6404 6649 -5 1 959 348 345 117 42 chr4 49083721 49084081 -106546039 + L2a LINE L2 3008 3394 -32 1 959 532 314 26 20 chr4 49085183 49085378 -106544742 + B3A SINE B2 1 196 -2 1 959 210 136 85 0 chr4 49085706 49085765 -106544355 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 959 1256 71 5 32 chr4 49087194 49087384 -106542736 + L1_Mur1 LINE L1 5126 5310 -576 1 959 1928 171 27 3 chr4 49087384 49087713 -106542407 + Lx3B LINE L1 6636 6972 -1 1 959 1297 246 131 9 chr4 49090050 49090386 -106539734 + Lx6 LINE L1 6914 7290 -170 1 959 323 226 22 56 chr4 49090468 49090557 -106539563 + Lx7 LINE L1 7206 7291 -405 1 959 211 286 89 25 chr4 49091048 49091206 -106538914 + L2 LINE L2 2378 2545 -874 1 959 665 254 98 47 chr4 49093673 49093908 -106536212 - MER2 DNA MER2_type -6 339 93 1 959 226 337 92 0 chr4 49094069 49094167 -106535953 - L3 LINE CR1 -150 4339 4233 1 959 633 258 112 27 chr4 49094359 49094546 -106535574 - B3 SINE B2 -12 204 2 1 959 1661 266 48 9 chr4 49094718 49095173 -106534947 + Lx6 LINE L1 6988 7460 0 1 959 1100 263 28 42 chr4 49095345 49095631 -106534489 + B4A SINE B4 11 292 0 1 959 233 360 13 0 chr4 49095633 49095708 -106534412 + (CATG)n Simple_repeat Simple_repeat 3 78 0 1 959 1291 254 136 79 chr4 49096574 49097083 -106533037 - RMER15 LTR ERVL -16 559 22 1 959 253 325 97 30 chr4 49097633 49097798 -106532322 + MamGypLTR1d LTR Gypsy 598 773 -40 1 959 475 272 241 21 chr4 49097810 49098196 -106531924 - L1MC4a LINE L1 -8 7874 7404 1 959 1338 180 85 75 chr4 49098317 49098694 -106531426 - Lx3C LINE L1 -2 6998 6609 1 959 194 143 24 0 chr4 49098925 49098950 -106531170 + polypyrimidine Low_complexity Low_complexity 22 46 0 1 959 1200 111 0 0 chr4 49098950 49099130 -106530990 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 959 194 143 24 0 chr4 49099130 49099146 -106530974 + polypyrimidine Low_complexity Low_complexity 5 21 0 1 959 458 238 0 6 chr4 49099172 49099333 -106530787 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 959 645 236 12 36 chr4 49099341 49099508 -106530612 - RSINE1 SINE B4 0 165 3 1 959 1487 208 43 38 chr4 49099974 49100344 -106529776 + ORR1D1 LTR MaLR 1 372 -2 1 959 252 328 76 23 chr4 49100913 49101044 -106529076 - MIRb SINE MIR -40 228 91 1 959 843 279 66 34 chr4 49101559 49102325 -106527795 + L1MA8 LINE L1 5216 6089 -202 1 959 585 91 50 0 chr4 49102414 49102535 -106527585 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 1 959 699 294 11 6 chr4 49102536 49102717 -106527403 - B3 SINE B2 -34 182 1 1 959 372 243 71 39 chr4 49102719 49102873 -106527247 + L1MA8 LINE L1 6103 6261 -30 1 959 333 332 45 22 chr4 49103070 49103292 -106526828 + MARNA DNA Mariner 115 341 -245 1 959 235 265 0 0 chr4 49103630 49103679 -106526441 + B4A SINE B4 5 53 -239 1 959 560 315 21 0 chr4 49103737 49103880 -106526240 + RSINE1 SINE B4 1 146 -19 1 959 2867 174 26 81 chr4 49103907 49104526 -106525594 - RMER4B LTR ERVK 0 585 1 1 959 243 336 8 34 chr4 49106132 49106249 -106523871 - MLT1H1 LTR MaLR -3 552 439 1 959 225 65 0 0 chr4 49106385 49106416 -106523704 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 959 8248 108 55 50 chr4 49106714 49107367 -106522753 - Lx3_Mus LINE L1 -2 7007 6402 1 959 1124 70 35 0 chr4 49107367 49107509 -106522611 - B1_Mus1 SINE Alu 0 148 2 1 959 8248 108 55 50 chr4 49107509 49107848 -106522272 - Lx3_Mus LINE L1 -608 6401 6036 1 959 501 17 0 0 chr4 49107848 49107906 -106522214 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 1 959 8248 85 50 12 chr4 49107906 49108485 -106521635 - Lx3_Mus LINE L1 -974 6035 5429 1 959 597 278 96 61 chr4 49108973 49109399 -106520721 - L1MC3 LINE L1 0 7785 7345 1 959 475 345 55 10 chr4 49109991 49110193 -106519927 + Tigger5 DNA MER2_type 3 213 -2193 1 959 294 331 31 0 chr4 49110179 49110306 -106519814 + Tigger5 DNA MER2_type 2276 2406 0 1 959 271 289 83 38 chr4 49111361 49111494 -106518626 - MIRb SINE MIR -119 149 11 1 959 215 321 88 70 chr4 49111572 49111743 -106518377 - MER5B DNA MER1_type -1 177 4 1 959 311 357 85 20 chr4 49112074 49112320 -106517800 + L2a LINE L2 3125 3386 -40 1 959 351 0 0 0 chr4 49112350 49112389 -106517731 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 959 2848 126 5 2 chr4 49112750 49113149 -106516971 - MTB LTR MaLR 0 400 1 1 959 321 346 76 27 chr4 49113368 49113552 -106516568 - MLT1J1 LTR MaLR -251 193 1 1 959 1116 231 5 0 chr4 49114301 49114513 -106515607 + B3 SINE B2 2 214 -2 1 959 692 247 23 102 chr4 49116226 49116249 -106513871 - RSINE1 SINE B4 0 165 144 1 959 270 0 0 0 chr4 49116249 49116279 -106513841 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 959 692 247 23 102 chr4 49116279 49116431 -106513689 - RSINE1 SINE B4 -22 143 4 1 959 187 290 227 21 chr4 49117844 49117985 -106512135 + MER5A DNA MER1_type 1 170 -19 1 959 197 330 149 18 chr4 49118005 49118119 -106512001 - L2 LINE L2 -507 2912 2784 1 959 292 274 158 0 chr4 49118866 49119012 -106511108 - HAL1 LINE L1 -2331 176 8 1 959 423 0 0 0 chr4 49120107 49120154 -106509966 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 959 204 40 0 0 chr4 49120155 49120180 -106509940 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 959 384 354 79 17 chr4 49120231 49120409 -106509711 - B4A SINE B4 -58 234 46 1 959 1875 79 4 27 chr4 49120502 49120763 -106509357 + L1Md_F2 LINE L1 6328 6582 0 1 959 438 316 82 18 chr4 49120955 49121174 -106508946 - HAL1 LINE L1 -2272 235 3 1 959 539 255 202 27 chr4 49122042 49122133 -106507987 - Lx8 LINE L1 -1 7472 7360 1 959 357 43 0 0 chr4 49122133 49122180 -106507940 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 959 539 255 202 27 chr4 49122180 49122350 -106507770 - Lx8 LINE L1 -114 7359 7166 1 959 339 307 114 26 chr4 49122650 49122882 -106507238 + MIRb SINE MIR 4 262 0 1 959 2508 60 0 0 chr4 49124014 49124314 -106505806 - L1_Mus1 LINE L1 0 6567 6268 1 959 37 0 0 0 chr4 49124509 49124546 -106505574 + AT_rich Low_complexity Low_complexity 1 37 0 1 959 189 0 0 0 chr4 49124618 49124639 -106505481 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 959 375 23 0 0 chr4 49124639 49124682 -106505438 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 959 1740 239 26 35 chr4 49124703 49125162 -106504958 - Lx7 LINE L1 -294 7402 6948 1 959 1518 138 37 111 chr4 49125163 49125513 -106504607 - RMER3D-int LTR ERVK -1216 1626 1303 1 959 7439 52 2 4 chr4 49125561 49126477 -106503643 - L1Md_F2 LINE L1 0 6582 5669 1 959 676 168 0 16 chr4 49126478 49126605 -106503515 - RMER3D-int LTR ERVK -1547 1295 1171 1 959 888 186 94 21 chr4 49126614 49126806 -106503314 - ORR1D1 LTR MaLR -168 206 1 1 959 429 20 0 0 chr4 49126960 49127010 -106503110 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 959 459 246 36 22 chr4 49127012 49127149 -106502971 - L1MA4 LINE L1 -359 5941 5803 1 959 191 103 26 0 chr4 49128404 49128443 -106501677 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 959 449 360 32 26 chr4 49129130 49129284 -106500836 + RSINE1 SINE B4 2 156 -9 1 959 24 32 0 0 chr4 49129697 49129728 -106500392 + AT_rich Low_complexity Low_complexity 1 31 0 1 959 406 292 116 12 chr4 49130394 49130567 -106499553 - MIRb SINE MIR -18 250 60 1 959 346 315 162 5 chr4 49130894 49131098 -106499022 - MLT1C LTR MaLR -31 436 201 1 959 465 122 0 0 chr4 49131974 49132048 -106498072 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 959 190 271 16 78 chr4 49132112 49132176 -106497944 + L2b LINE L2 3102 3161 -214 1 959 450 251 68 81 chr4 49132269 49132487 -106497633 - MTEa LTR MaLR 0 379 161 1 959 1937 184 53 11 chr4 49132487 49132865 -106497255 + ORR1B1 LTR MaLR 1 394 0 1 959 411 336 44 107 chr4 49132865 49132961 -106497159 - MTEa LTR MaLR -199 160 66 1 959 180 0 0 0 chr4 49132961 49132981 -106497139 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 959 411 336 44 107 chr4 49132981 49133039 -106497081 - MTEa LTR MaLR -294 65 11 1 959 261 296 21 42 chr4 49133345 49133484 -106496636 + CT-rich Low_complexity Low_complexity 1 136 0 1 959 419 305 40 7 chr4 49133628 49133780 -106496340 - L3 LINE CR1 -863 3626 3470 1 959 7464 61 33 1 chr4 49134484 49135391 -106494729 + L1Md_F2 LINE L1 5635 6570 -12 1 959 3512 181 122 8 chr4 49135403 49136114 -106494006 + Lx5 LINE L1 6259 7050 0 1 959 772 276 36 5 chr4 49136123 49136316 -106493804 + B4 SINE B4 81 279 -13 1 959 185 361 48 12 chr4 49137799 49137883 -106492237 - MIRc SINE MIR -124 144 58 1 959 667 293 98 101 chr4 49138900 49139003 -106491117 - MTE2a LTR MaLR -4 375 291 1 959 674 247 212 6 chr4 49139003 49139182 -106490938 - B3 SINE B2 0 216 1 1 959 667 293 98 101 chr4 49139182 49139368 -106490752 - MTE2a LTR MaLR -89 290 88 1 959 450 0 0 0 chr4 49139368 49139418 -106490702 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 959 667 293 98 101 chr4 49139418 49139484 -106490636 - MTE2a LTR MaLR -292 87 20 1 959 503 307 59 18 chr4 49139493 49139662 -106490458 - MER5A DNA MER1_type -8 181 6 1 959 261 57 0 0 chr4 49140138 49140173 -106489947 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 959 180 385 31 0 chr4 49140484 49140580 -106489540 - L2 LINE L2 -565 2854 2756 1 959 243 361 0 0 chr4 49141267 49141350 -106488770 + MIR SINE MIR 47 129 -133 1 959 196 336 102 23 chr4 49142540 49142668 -106487452 - MIRb SINE MIR -115 153 16 1 959 675 239 22 0 chr4 49142904 49143042 -106487078 + B3A SINE B2 1 141 -57 1 959 531 31 0 0 chr4 49143042 49143107 -106487013 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 959 477 71 0 0 chr4 49143107 49143177 -106486943 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 959 247 271 21 96 chr4 49143246 49143340 -106486780 + MT2B2 LTR ERVL 154 240 -344 2 959 725 246 0 0 chr4 49143260 49143394 -106486726 + B1F1 SINE Alu 6 139 -10 2 959 2713 134 10 3 chr4 49143462 49143851 -106486269 + ORR1B1 LTR MaLR 3 394 0 2 959 258 268 167 49 chr4 49143855 49143957 -106486163 + ID_B1 SINE B4 103 216 -8 2 959 844 268 11 5 chr4 49143983 49144174 -106485946 + B3A SINE B2 4 195 -3 2 959 237 65 0 0 chr4 49144424 49144455 -106485665 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 959 793 322 31 8 chr4 49144878 49145135 -106484985 - Lx9 LINE L1 -484 7160 6898 2 959 234 315 116 45 chr4 49145149 49145309 -106484811 + Lx8 LINE L1 7130 7426 -218 2 959 408 155 0 0 chr4 49145331 49145402 -106484718 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 959 23 54 0 0 chr4 49146775 49146812 -106483308 + AT_rich Low_complexity Low_complexity 1 37 0 2 959 442 372 15 0 chr4 49146829 49146966 -106483154 - RSINE1 SINE B4 -24 141 3 2 959 342 287 64 119 chr4 49148335 49148647 -106481473 + Lx8 LINE L1 7170 7464 -9 2 959 365 200 62 62 chr4 49148756 49148836 -106481284 + RSINE1 SINE B4 72 151 -14 2 959 405 81 0 0 chr4 49148839 49148901 -106481219 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 119 40048 22 1 29 chr4 49149636 49155987 -106474133 - L1Md_T LINE L1 0 6582 413 2 960 619 152 5 38 chr4 49156053 49156238 -106473882 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 960 445 370 31 89 chr4 49156298 49156501 -106473619 + B4A SINE B4 7 200 -92 2 960 4172 124 23 13 chr4 49156501 49157113 -106473007 + Lx LINE L1 6034 6651 -3 2 960 445 370 31 89 chr4 49157113 49157200 -106472920 + B4A SINE B4 201 280 -12 2 960 342 0 0 0 chr4 49157247 49157285 -106472835 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 960 603 0 0 0 chr4 49157285 49157352 -106472768 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 960 537 188 60 130 chr4 49158345 49158645 -106471475 - RLTR15 LTR ERVK -45 314 36 2 960 1701 242 44 39 chr4 49158845 49159257 -106470863 + MTD LTR MaLR 1 414 -5 2 960 843 263 70 41 chr4 49160148 49160418 -106469702 + B4A SINE B4 1 278 -14 2 960 603 0 0 0 chr4 49160472 49160539 -106469581 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2 960 473 0 18 0 chr4 49160549 49160606 -106469514 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 960 1929 198 95 5 chr4 49160611 49161033 -106469087 - MT2A LTR ERVL -73 460 1 2 960 245 125 0 77 chr4 49161818 49161870 -106468250 - MER117 DNA MER1_type -45 152 105 2 960 253 287 147 39 chr4 49162263 49162419 -106467701 - MIR SINE MIR -40 222 50 2 960 236 306 0 0 chr4 49163326 49163388 -106466732 - L2c LINE L2 -13 3374 3313 2 960 1698 216 113 3 chr4 49164026 49164352 -106465768 + MTC LTR MaLR 2 352 -69 2 960 369 0 0 0 chr4 49164352 49164393 -106465727 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 960 1698 216 113 3 chr4 49164393 49164437 -106465683 + MTC LTR MaLR 353 412 -9 2 960 288 186 0 92 chr4 49165369 49165434 -106464686 + B4 SINE B4 2 60 -232 2 960 657 129 35 0 chr4 49165739 49165910 -106464210 + (CCTG)n Simple_repeat Simple_repeat 2 178 0 2 960 298 173 13 13 chr4 49166410 49166486 -106463634 + CT-rich Low_complexity Low_complexity 1 76 0 2 960 415 151 46 11 chr4 49166491 49166578 -106463542 - Lx9 LINE L1 -153 7491 7402 2 960 336 77 0 0 chr4 49166582 49166634 -106463486 + (T)n Simple_repeat Simple_repeat 1 52 0 2 960 1967 240 10 7 chr4 49168341 49168752 -106461368 + MTD LTR MaLR 5 416 -3 2 960 297 296 50 29 chr4 49168889 49169028 -106461092 + L3 LINE CR1 4238 4379 -110 2 960 2949 138 6 2 chr4 49169054 49169525 -106460595 + Lx2 LINE L1 6524 6996 -1 2 960 250 269 244 0 chr4 49169825 49169944 -106460176 - MIRb SINE MIR 0 268 121 2 960 731 249 34 19 chr4 49172715 49172924 -106457196 + B3 SINE B2 2 213 -3 2 960 285 197 76 12 chr4 49173107 49173212 -106456908 + L1ME2 LINE L1 5850 5961 -212 2 960 332 164 0 15 chr4 49173631 49173699 -106456421 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 960 891 251 0 38 chr4 49173708 49173919 -106456201 - B3 SINE B2 -13 203 1 2 960 672 301 81 0 chr4 49174073 49174259 -106455861 + ID_B1 SINE B4 1 201 -23 2 960 584 186 53 0 chr4 49174673 49174786 -106455334 - MTD LTR MaLR -300 119 1 2 960 450 0 0 0 chr4 49174924 49174974 -106455146 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 960 23 33 0 0 chr4 49175382 49175412 -106454708 + AT_rich Low_complexity Low_complexity 1 30 0 2 960 192 40 0 0 chr4 49175445 49175470 -106454650 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 2 960 1371 231 90 6 chr4 49175474 49175796 -106454324 - MTD LTR MaLR -70 349 1 2 960 2136 244 44 22 chr4 49175804 49176442 -106453678 - MTD-int LTR MaLR -16 1242 492 2 960 723 278 15 30 chr4 49176415 49176612 -106453508 - B3 SINE B2 -21 195 2 2 960 306 0 0 0 chr4 49176789 49176823 -106453297 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 960 269 282 53 15 chr4 49177069 49177202 -106452918 + L1MC1 LINE L1 5447 5584 -749 2 960 365 320 10 39 chr4 49177262 49177467 -106452653 + L1MC1 LINE L1 5719 5917 -416 2 960 391 306 113 57 chr4 49177497 49177691 -106452429 - B3 SINE B2 -10 206 2 2 960 1067 72 0 62 chr4 49178305 49178497 -106451623 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 960 1365 34 8 11 chr4 49178534 49178898 -106451222 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 2 960 405 0 0 0 chr4 49180537 49180582 -106449538 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 960 270 0 0 0 chr4 49181376 49181406 -106448714 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 960 266 361 118 36 chr4 49182001 49182222 -106447898 - MIRb SINE MIR -4 264 26 2 960 423 299 46 46 chr4 49183828 49183994 -106446126 + MTEa LTR MaLR 1 164 -215 2 960 297 0 0 0 chr4 49183994 49184027 -106446093 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 960 423 299 46 46 chr4 49184027 49184056 -106446064 + MTEa LTR MaLR 165 195 -184 2 960 217 167 18 18 chr4 49184067 49184122 -106445998 + CT-rich Low_complexity Low_complexity 1 55 0 2 960 313 344 82 13 chr4 49184128 49184287 -106445833 + MTEa LTR MaLR 203 372 -7 2 960 270 0 0 0 chr4 49185730 49185760 -106444360 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 960 522 83 0 0 chr4 49185774 49185846 -106444274 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 960 184 304 58 0 chr4 49185869 49185938 -106444182 - MIR SINE MIR -138 124 52 2 960 441 0 0 0 chr4 49186688 49186737 -106443383 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 960 1001 240 158 39 chr4 49186879 49186950 -106443170 - ORR1D2 LTR MaLR -1 369 264 2 960 291 54 0 0 chr4 49186950 49186987 -106443133 + (CAT)n Simple_repeat Simple_repeat 3 39 0 2 960 1001 240 158 39 chr4 49186987 49187245 -106442875 - ORR1D2 LTR MaLR -107 263 2 2 960 769 316 32 65 chr4 49187388 49187788 -106442332 + MLT1B LTR MaLR 4 390 0 2 960 662 257 130 3 chr4 49188080 49188381 -106441739 + L1MA8 LINE L1 5948 6286 -5 2 960 183 42 0 0 chr4 49188567 49188591 -106441529 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 960 982 40 81 0 chr4 49188591 49188715 -106441405 - B1_Mm SINE Alu -13 134 1 2 960 26 50 0 0 chr4 49188874 49188914 -106441206 + AT_rich Low_complexity Low_complexity 1 40 0 2 960 220 325 39 0 chr4 49189100 49189177 -106440943 + L2b LINE L2 3293 3372 -3 2 960 246 297 214 14 chr4 49190254 49190394 -106439726 - MIRb SINE MIR -69 199 32 2 960 246 345 53 53 chr4 49192002 49192152 -106437968 - MER117 DNA MER1_type -18 179 30 2 960 355 276 41 5 chr4 49193549 49193669 -106436451 + PB1D7 SINE Alu 5 129 -20 2 960 196 350 152 21 chr4 49193692 49193975 -106436145 - L2 LINE L2 -1153 2266 1947 2 960 2378 114 164 0 chr4 49194108 49194565 -106435555 - RLTR47_MM LTR ERV1 0 532 1 2 960 454 329 86 44 chr4 49194659 49195093 -106435027 - LTR16C LTR ERVL 0 489 13 2 960 186 208 0 0 chr4 49196721 49196774 -106433346 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 2 960 1458 192 5 177 chr4 49196810 49197189 -106432931 + MTC LTR MaLR 108 421 0 2 960 186 323 97 39 chr4 49197414 49197517 -106432603 - L3 LINE CR1 -110 4379 4271 2 960 306 50 0 0 chr4 49197752 49197792 -106432328 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 960 3053 188 4 52 chr4 49198131 49198848 -106431272 - L1_Mur3 LINE L1 -290 5590 4908 2 960 7456 122 241 7 chr4 49198844 49201542 -106428578 - L1Md_F2 LINE L1 -12 6570 3127 2 960 2208 154 40 55 chr4 49201565 49201806 -106428314 - L1Md_F2 LINE L1 -4137 1743 1521 2 960 1555 169 169 0 chr4 49201806 49202143 -106427977 + ORR1B1 LTR MaLR 1 394 0 2 960 4737 174 37 38 chr4 49202143 49203348 -106426772 - L1Md_F2 LINE L1 -4360 1520 297 2 960 402 21 0 0 chr4 49203372 49203419 -106426701 + (TATTG)n Simple_repeat Simple_repeat 2 48 0 2 960 319 397 19 13 chr4 49203435 49203593 -106426527 - RSINE1 SINE B4 0 165 7 2 960 201 175 0 0 chr4 49203616 49203656 -106426464 + CT-rich Low_complexity Low_complexity 2 41 0 2 960 940 325 31 41 chr4 49203675 49203967 -106426153 + B4 SINE B4 1 289 -3 2 960 1134 85 0 0 chr4 49203990 49204167 -106425953 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 960 420 37 0 0 chr4 49204170 49204224 -106425896 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 2 960 6209 165 54 39 chr4 49204491 49204662 -106425458 - MTC-int LTR MaLR 0 1258 1094 2 960 624 27 0 0 chr4 49204662 49204736 -106425384 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 2 960 6209 165 54 39 chr4 49204736 49204905 -106425215 - MTC-int LTR MaLR -165 1093 954 2 960 414 39 0 0 chr4 49204905 49204957 -106425163 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 960 6209 165 54 39 chr4 49204957 49205834 -106424286 - MTC-int LTR MaLR -305 953 21 2 960 2131 201 27 0 chr4 49205875 49206249 -106423871 - MTC LTR MaLR 0 421 38 2 960 6381 56 1 0 chr4 49206521 49207342 -106422778 - L1_Mus1 LINE L1 0 6567 5767 2 960 501 62 0 0 chr4 49209245 49209310 -106420810 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2 960 324 93 0 0 chr4 49209312 49209355 -106420765 - HAL1-3A_ME LINE L1 -846 2012 1970 2 960 239 294 90 34 chr4 49210167 49210323 -106419797 - L2a LINE L2 -16 3410 3192 2 960 230 358 36 46 chr4 49210329 49210525 -106419595 - L2b LINE L2 -243 3132 2939 3 960 249 356 59 44 chr4 49211238 49211373 -106418747 - MamRep564 Unknown Unknown 0 357 221 3 960 563 261 48 20 chr4 49212314 49212568 -106417552 + Lx7 LINE L1 5702 5962 -1682 3 960 298 260 89 0 chr4 49212933 49213056 -106417064 - ORSL-2b DNA Tip100 -231 277 144 3 960 1206 50 0 0 chr4 49213109 49213250 -106416870 - B1_Mus1 SINE Alu -7 141 1 3 960 460 322 38 60 chr4 49213792 49213977 -106416143 + MER20 DNA MER1_type 35 215 -4 3 960 382 228 64 16 chr4 49214912 49215037 -106415083 - ORSL DNA Tip100 -1 274 144 3 960 687 166 0 8 chr4 49215458 49215580 -106414540 - B1_Mur3 SINE Alu -1 119 5 3 960 385 261 145 29 chr4 49215580 49215596 -106414524 - ID_B1 SINE B4 -1 223 70 3 960 470 261 60 9 chr4 49215596 49215813 -106414307 - L1M3 LINE L1 -1595 4545 4318 3 960 354 337 36 31 chr4 49215925 49216118 -106414002 - L1M5 LINE L1 -692 5548 5355 3 960 371 265 57 40 chr4 49216341 49216518 -106413602 + L1M4 LINE L1 5184 5363 -783 3 960 1395 35 0 0 chr4 49216885 49217057 -106413063 - L1Md_F3 LINE L1 -14 6570 6399 3 960 285 24 0 68 chr4 49217084 49217128 -106412992 - 5S rRNA rRNA -80 41 1 3 960 6482 125 11 8 chr4 49217128 49218181 -106411939 - Lx2 LINE L1 -20 6977 5922 3 960 391 278 17 17 chr4 49220284 49220421 -106409699 - PB1D7 SINE Alu -19 130 1 3 960 204 40 0 0 chr4 49221752 49221777 -106408343 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 960 1237 297 108 6 chr4 49221914 49222415 -106407705 - Lx8 LINE L1 -601 6872 6321 3 960 1535 166 48 112 chr4 49222540 49222651 -106407469 - Lx5 LINE L1 -8 7042 6917 3 960 369 0 0 0 chr4 49222651 49222692 -106407428 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 960 1535 166 48 112 chr4 49222692 49222973 -106407147 - Lx5 LINE L1 -134 6916 6675 3 960 1137 253 122 5 chr4 49223167 49223644 -106406476 - Lx8 LINE L1 -1546 5927 5363 3 960 361 341 39 56 chr4 49224151 49224384 -106405736 + RMER15 LTR ERVL 347 575 0 3 960 608 158 0 9 chr4 49225118 49225233 -106404887 + GA-rich Low_complexity Low_complexity 4 117 0 3 960 194 116 23 0 chr4 49227134 49227177 -106402943 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 960 378 0 0 0 chr4 49227511 49227553 -106402567 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 960 180 0 0 0 chr4 49228125 49228145 -106401975 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 960 899 193 127 0 chr4 49228605 49228802 -106401318 + URR1A DNA MER1_type 5 226 0 3 960 680 227 120 7 chr4 49229065 49229207 -106400913 - B3 SINE B2 -1 215 58 3 960 246 391 93 55 chr4 49229669 49229959 -106400161 - MLT1I LTR MaLR -13 398 98 3 960 265 305 15 92 chr4 49230741 49230871 -106399249 - LTR88a LTR Gypsy 0 816 697 3 960 345 24 0 0 chr4 49230922 49230964 -106399156 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 960 584 279 7 0 chr4 49230964 49231100 -106399020 - B1_Mur1 SINE Alu -10 139 3 3 960 314 345 8 25 chr4 49230993 49231112 -106399008 - ID_B1 SINE B4 -36 188 72 3 960 3965 124 27 0 chr4 49231473 49232102 -106398018 + L1_Mm LINE L1 5176 5821 -62 3 960 3911 82 13 7 chr4 49232102 49232652 -106397468 + L1_Mus4 LINE L1 6077 6629 -7 3 960 201 218 157 67 chr4 49233281 49233422 -106396698 - MIRm SINE MIR -115 161 3 3 960 23 33 0 0 chr4 49233578 49233608 -106396512 + AT_rich Low_complexity Low_complexity 1 30 0 3 960 245 368 28 19 chr4 49233921 49234029 -106396091 + LTR16E2 LTR ERVL 324 432 -136 3 960 998 71 7 0 chr4 49234077 49234217 -106395903 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 3 960 199 50 75 0 chr4 49234646 49234686 -106395434 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 960 1201 55 0 0 chr4 49234689 49234834 -106395286 - B1_Mus1 SINE Alu 0 148 4 3 960 726 280 51 38 chr4 49234880 49235176 -106394944 - MLT1A1 LTR MaLR -11 397 48 3 960 296 235 235 0 chr4 49235176 49235291 -106394829 - RMER15 LTR ERVL 0 575 434 3 960 464 358 94 4 chr4 49236303 49236558 -106393562 - LTR16C LTR ERVL -113 376 99 3 960 1383 152 9 0 chr4 49236944 49237167 -106392953 + URR1B DNA MER1_type 1 225 0 3 960 214 344 76 19 chr4 49237198 49237316 -106392804 + MIR SINE MIR 22 146 -130 3 960 414 0 0 0 chr4 49238553 49238599 -106391521 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 960 22 56 0 0 chr4 49239008 49239044 -106391076 + AT_rich Low_complexity Low_complexity 1 36 0 3 960 457 299 17 8 chr4 49239084 49239202 -106390918 - ID_B1 SINE B4 -26 198 80 3 960 182 344 33 0 chr4 49239727 49239788 -106390332 - L2b LINE L2 -3 3372 3310 3 960 339 25 0 0 chr4 49240121 49240161 -106389959 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 3 960 1124 114 6 0 chr4 49240163 49240339 -106389781 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 3 960 350 104 0 0 chr4 49241237 49241285 -106388835 - HAL1-3A_ME LINE L1 -835 2023 1976 3 960 686 346 11 62 chr4 49241306 49241580 -106388540 - B4 SINE B4 0 292 33 3 960 1497 190 108 3 chr4 49241580 49241913 -106388207 - RLTR9A LTR ERVK 0 368 1 3 960 400 294 92 0 chr4 49242464 49242583 -106387537 - B1F2 SINE Alu -9 140 11 3 960 365 184 26 13 chr4 49243058 49243135 -106386985 - ID4_ SINE ID -4 79 2 3 960 307 174 280 25 chr4 49243363 49243481 -106386639 + B1F SINE Alu 1 148 -1 3 960 25 31 0 0 chr4 49243572 49243604 -106386516 + AT_rich Low_complexity Low_complexity 1 32 0 3 960 450 0 0 0 chr4 49243684 49243734 -106386386 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 3 960 1209 46 0 0 chr4 49243734 49243885 -106386235 - B2_Mm2 SINE B2 -44 151 1 3 960 513 299 96 47 chr4 49243929 49244262 -106385858 + MER90 LTR ERV1 6 395 -219 3 960 423 0 0 0 chr4 49244273 49244320 -106385800 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 960 261 0 0 0 chr4 49244320 49244348 -106385772 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 960 1148 272 43 0 chr4 49244349 49244603 -106385517 - B4A SINE B4 -26 266 2 3 960 278 252 100 92 chr4 49244634 49244905 -106385215 - Helitron1Nb_Mam RC Helitron -630 486 214 3 960 753 268 59 16 chr4 49246041 49246295 -106383825 - Lx9 LINE L1 -986 6658 6394 3 960 324 182 79 14 chr4 49246326 49246465 -106383655 + (TA)n Simple_repeat Simple_repeat 1 148 0 3 960 1365 304 75 11 chr4 49246602 49247174 -106382946 - Lx8 LINE L1 -38 7435 6827 3 960 1271 85 10 36 chr4 49247288 49247484 -106382636 - B2_Mm1t SINE B2 -1 192 2 3 960 356 229 83 0 chr4 49247675 49247832 -106382288 - L1M2 LINE L1 -812 5488 5319 3 960 22 0 0 0 chr4 49247833 49247855 -106382265 + AT_rich Low_complexity Low_complexity 1 22 0 3 960 306 275 5 85 chr4 49247868 49248067 -106382053 - Lx7 LINE L1 0 7696 7514 3 960 293 292 62 10 chr4 49248276 49248373 -106381747 - ORR1E LTR MaLR -2 357 256 3 960 182 227 194 15 chr4 49248479 49248546 -106381574 + MIRb SINE MIR 49 127 -141 3 960 1017 161 109 10 chr4 49252203 49252404 -106377716 + URR1A DNA MER1_type 5 225 -1 3 960 738 118 0 9 chr4 49254334 49254445 -106375675 + URR1A DNA MER1_type 38 147 -79 3 960 225 336 66 37 chr4 49254610 49254746 -106375374 + MamGypLTR1c LTR Gypsy 352 491 -291 3 960 234 314 54 24 chr4 49254801 49254962 -106375158 + MamGypLTR1c LTR Gypsy 620 798 -5 3 960 297 0 0 0 chr4 49255816 49255849 -106374271 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 960 396 0 0 0 chr4 49255849 49255892 -106374228 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 960 914 306 13 24 chr4 49255941 49256322 -106373798 - Lx9 LINE L1 -192 7452 7076 3 960 185 61 0 83 chr4 49256880 49256916 -106373204 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 3 960 22 35 0 0 chr4 49257383 49257412 -106372708 + AT_rich Low_complexity Low_complexity 1 29 0 3 960 277 322 83 51 chr4 49258190 49258347 -106371773 + LTR79 LTR ERVL 127 288 -239 3 960 1300 132 147 38 chr4 49258600 49258892 -106371228 - Lx3B LINE L1 -4 6969 6646 3 960 520 276 0 17 chr4 49259711 49259829 -106370291 + PB1D10 SINE Alu 1 116 -1 3 960 181 151 38 0 chr4 49259895 49259948 -106370172 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 960 207 114 0 0 chr4 49260415 49260450 -106369670 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 960 227 93 23 0 chr4 49260733 49260776 -106369344 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 960 1091 200 48 14 chr4 49260894 49261102 -106369018 - B3 SINE B2 0 216 2 3 960 388 238 123 9 chr4 49261295 49261401 -106368719 + MLT1A1 LTR MaLR 291 408 0 3 960 347 311 79 36 chr4 49261922 49262175 -106367945 - LTR85a LTR Gypsy? -370 332 69 3 960 291 114 0 0 chr4 49262175 49262219 -106367901 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 960 1196 191 4 11 chr4 49262771 49263048 -106367072 + RMER6A LTR ERVK 1 323 -433 3 960 1146 211 38 19 chr4 49263048 49263313 -106366807 + Lx5 LINE L1 6737 7006 -44 3 960 342 45 0 0 chr4 49263334 49263378 -106366742 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 3 960 2113 133 101 29 chr4 49263383 49263573 -106366547 + RMER6A LTR ERVK 310 489 -267 3 960 594 28 0 0 chr4 49263573 49263645 -106366475 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 960 2113 133 101 29 chr4 49263645 49263871 -106366249 + RMER6A LTR ERVK 490 755 -1 3 960 257 348 88 53 chr4 49264731 49265016 -106365104 - L3 LINE CR1 -72 4417 4123 3 960 288 342 50 25 chr4 49265613 49265733 -106364387 - MLT1G3 LTR MaLR -244 351 229 3 960 213 403 48 0 chr4 49266202 49266326 -106363794 - L2c LINE L2 -1 3386 3257 3 960 24 32 0 0 chr4 49267251 49267282 -106362838 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 2119 140 92 0 chr4 49267431 49267767 -106362353 - ORR1B2 LTR MaLR 0 367 1 4 960 348 284 41 28 chr4 49268557 49268702 -106361418 + L1M LINE L1 5269 5415 -763 4 960 262 305 0 10 chr4 49268755 49268851 -106361269 + L1M LINE L1 5572 5666 -574 4 960 387 0 0 0 chr4 49269034 49269077 -106361043 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 960 485 254 62 118 chr4 49269084 49269356 -106360764 + B4A SINE B4 3 259 -33 4 960 351 0 0 0 chr4 49269362 49269401 -106360719 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 960 500 331 42 0 chr4 49269477 49269619 -106360501 + ID_B1 SINE B4 64 211 -13 4 960 220 204 0 0 chr4 49269622 49269666 -106360454 + CT-rich Low_complexity Low_complexity 1 44 0 4 960 215 160 40 0 chr4 49269666 49269716 -106360404 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 4 960 3442 33 2 0 chr4 49269731 49270126 -106359994 + MTA_Mm LTR MaLR 1 396 0 4 960 262 204 28 28 chr4 49270242 49270348 -106359772 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 4 960 311 260 59 86 chr4 49270470 49270618 -106359502 + MIR3 SINE MIR 47 198 -10 4 960 25 0 0 0 chr4 49270797 49270822 -106359298 + AT_rich Low_complexity Low_complexity 1 25 0 4 960 2860 97 97 2 chr4 49270889 49271332 -106358788 - L1_Mus3 LINE L1 0 6638 6154 4 960 475 296 90 25 chr4 49271685 49271886 -106358234 - MIR SINE MIR -21 241 28 4 960 273 281 0 0 chr4 49272027 49272084 -106358036 + ID4_ SINE ID 1 57 -26 4 960 180 0 0 0 chr4 49273138 49273158 -106356962 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 960 5748 18 22 0 chr4 49273163 49273831 -106356289 - L1Md_F3 LINE L1 -14 6570 5888 4 960 1689 40 9 4 chr4 49273831 49274056 -106356064 + L1Md_F3 LINE L1 5673 5898 -686 4 960 612 314 81 5 chr4 49277129 49277404 -106352716 + Lx9 LINE L1 6404 6809 -835 4 960 993 221 38 9 chr4 49278058 49278268 -106351852 - B3 SINE B2 0 216 1 4 14 36287 52 7 5 chr4 49278586 49284195 -106345925 + L1Md_T LINE L1 7 5589 -297 4 961 8996 34 0 0 chr4 49284195 49285191 -106344929 + L1Md_T LINE L1 5590 6585 0 4 961 446 177 8 0 chr4 49285317 49285441 -106344679 + GA-rich Low_complexity Low_complexity 2 126 0 4 961 959 166 39 6 chr4 49285443 49285625 -106344495 - ORR1C1 LTR MaLR -190 188 1 4 961 564 295 58 13 chr4 49286241 49286423 -106343697 - B3A SINE B2 -1 215 20 4 961 6002 65 25 3 chr4 49286697 49287427 -106342693 + L1Md_F2 LINE L1 5837 6582 0 4 961 369 266 11 11 chr4 49287580 49287675 -106342445 - Lx8 LINE L1 -194 7279 7185 4 961 788 312 56 0 chr4 49287695 49287945 -106342175 - Lx8 LINE L1 -1002 6471 6208 4 961 430 213 54 27 chr4 49287958 49288069 -106342051 - B1F SINE Alu -6 143 30 4 961 237 317 0 0 chr4 49288751 49288811 -106341309 - MIRb SINE MIR -19 249 190 4 961 287 326 11 0 chr4 49289368 49289457 -106340663 + L4 LINE RTE 1348 1437 -592 4 961 260 299 11 44 chr4 49289491 49289582 -106340538 - MIR SINE MIR -70 192 105 4 961 413 132 0 5 chr4 49290083 49290171 -106339949 - L1Md_F2 LINE L1 -377 6189 6103 4 961 3375 52 0 0 chr4 49290152 49290553 -106339567 - L1Md_F2 LINE L1 -231 6351 5951 4 961 3238 79 24 7 chr4 49290553 49290973 -106339147 + L1Md_F2 LINE L1 6156 6582 0 4 961 498 17 0 0 chr4 49291097 49291156 -106338964 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 961 324 48 0 0 chr4 49292092 49292134 -106337986 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 4 961 243 0 0 0 chr4 49292226 49292253 -106337867 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 961 681 299 51 42 chr4 49293397 49293613 -106336507 + ID_B1 SINE B4 2 219 -5 4 961 1213 68 7 0 chr4 49294141 49294287 -106335833 + B1_Mus1 SINE Alu 2 148 0 4 961 585 202 0 0 chr4 49294492 49294569 -106335551 + polypyrimidine Low_complexity Low_complexity 56 132 0 4 961 546 16 0 0 chr4 49294569 49294632 -106335488 + (TCC)n Simple_repeat Simple_repeat 2 64 0 4 961 585 202 0 0 chr4 49294632 49294683 -106335437 + polypyrimidine Low_complexity Low_complexity 5 55 0 4 961 22 0 0 0 chr4 49295472 49295494 -106334626 + AT_rich Low_complexity Low_complexity 1 22 0 4 961 29 0 0 0 chr4 49297101 49297130 -106332990 + AT_rich Low_complexity Low_complexity 1 29 0 4 961 184 329 40 0 chr4 49297412 49297488 -106332632 - MIRm SINE MIR -107 169 91 4 961 189 74 0 0 chr4 49297864 49297891 -106332229 + (G)n Simple_repeat Simple_repeat 1 27 0 4 961 350 48 0 0 chr4 49298956 49298998 -106331122 + HAL1-3A_ME LINE L1 1976 2017 -841 4 961 189 175 0 0 chr4 49299523 49299563 -106330557 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 4 961 2395 284 40 62 chr4 49300310 49301170 -106328950 + Lx9 LINE L1 6612 7452 -192 4 961 1445 256 101 116 chr4 49301430 49301846 -106328274 + L1MA6 LINE L1 2330 2764 -3379 4 961 1202 95 0 0 chr4 49301846 49301993 -106328127 + B1_Mm SINE Alu 1 147 0 4 961 1445 256 101 116 chr4 49301993 49302169 -106327951 + L1MA6 LINE L1 2765 2908 -3235 4 961 950 28 9 0 chr4 49302169 49302275 -106327845 + U6 snRNA snRNA 1 107 0 4 961 7018 50 18 4 chr4 49302275 49303102 -106327018 + L1Md_F2 LINE L1 5732 6570 -12 4 961 1445 256 101 116 chr4 49303102 49303121 -106326999 + L1MA6 LINE L1 2909 2918 -3225 4 961 711 65 0 0 chr4 49303121 49303214 -106326906 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 961 1445 256 101 116 chr4 49303214 49303254 -106326866 + L1MA6 LINE L1 2919 2930 -3213 4 961 613 306 112 26 chr4 49303254 49303522 -106326598 + B4A SINE B4 2 292 0 4 961 1445 256 101 116 chr4 49303522 49303577 -106326543 + L1MA6 LINE L1 2931 2946 -3197 4 961 477 0 0 0 chr4 49303577 49303630 -106326490 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 961 1445 256 101 116 chr4 49303630 49304115 -106326005 + L1MA6 LINE L1 2947 3507 -2636 4 961 2122 114 6 16 chr4 49304115 49304437 -106325683 + ORR1A2 LTR MaLR 1 319 -8 4 961 620 317 22 26 chr4 49304443 49304712 -106325408 + L1MA6 LINE L1 3500 3767 -2373 4 961 2239 264 77 0 chr4 49304939 49305549 -106324571 + Lx9 LINE L1 6293 6949 -695 4 961 1906 271 78 14 chr4 49305548 49306527 -106323593 - Lx6 LINE L1 0 7460 6110 4 961 1379 260 156 44 chr4 49306529 49307037 -106323083 + Lx9 LINE L1 6940 7463 -181 4 961 438 20 0 0 chr4 49307037 49307088 -106323032 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 961 1379 260 156 44 chr4 49307088 49307195 -106322925 + Lx9 LINE L1 7464 7623 -21 4 961 646 259 275 12 chr4 49307215 49307719 -106322401 + L1MA6 LINE L1 3770 4405 -1738 4 961 540 221 57 92 chr4 49307758 49307898 -106322222 + B3 SINE B2 44 188 -28 4 961 933 278 54 3 chr4 49307898 49308251 -106321869 + L1MA6 LINE L1 4909 5279 -864 4 961 1046 291 195 41 chr4 49308298 49309079 -106321041 + L1MA6 LINE L1 5388 6288 -12 4 961 1222 56 7 0 chr4 49309689 49309833 -106320287 + B1_Mus1 SINE Alu 2 146 -2 4 961 562 302 0 16 chr4 49310271 49310392 -106319728 - RSINE1 SINE B4 -4 161 43 4 961 234 284 24 12 chr4 49310394 49310476 -106319644 + L1MA4 LINE L1 5849 5931 -369 4 961 254 308 8 8 chr4 49310794 49310912 -106319208 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 961 898 259 34 132 chr4 49311048 49311550 -106318570 - RLTR12B LTR ERVK -29 499 47 4 961 3271 57 10 0 chr4 49312048 49312435 -106317685 - L1_Mus1 LINE L1 -2 6565 6175 4 961 469 155 0 45 chr4 49312435 49312523 -106317597 + L1_Mus1 LINE L1 6083 6166 -401 4 961 1007 246 10 0 chr4 49312548 49312751 -106317369 + B3 SINE B2 1 205 -11 4 961 47 19 0 0 chr4 49315279 49315333 -106314787 + AT_rich Low_complexity Low_complexity 1 54 0 4 961 330 268 71 0 chr4 49315406 49315518 -106314602 - Lx2B LINE L1 -5 6995 6876 4 961 272 250 0 0 chr4 49316686 49316742 -106313378 + MER5A DNA MER1_type 42 97 -92 4 961 441 0 0 0 chr4 49316906 49316955 -106313165 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 961 741 306 64 30 chr4 49316988 49317254 -106312866 - B4A SINE B4 -10 282 8 4 961 210 128 0 0 chr4 49317669 49317708 -106312412 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 4 961 597 264 34 7 chr4 49318641 49318790 -106311330 + B3A SINE B2 2 154 -44 4 961 180 125 0 0 chr4 49318790 49318822 -106311298 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 961 559 135 47 140 chr4 49319008 49319157 -106310963 + B1F1 SINE Alu 15 307 -7 4 961 232 200 86 17 chr4 49319206 49319323 -106310797 + Lx9 LINE L1 7517 7641 -3 4 961 247 332 73 19 chr4 49320359 49320565 -106309555 - L2a LINE L2 -13 3413 3197 4 961 2478 75 3 3 chr4 49320785 49321117 -106309003 - IAPEY3_LTR LTR ERVK 0 332 1 4 961 369 54 26 51 chr4 49322219 49322297 -106307823 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 4 961 234 0 0 0 chr4 49323648 49323674 -106306446 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 961 717 12 0 0 chr4 49323674 49323755 -106306365 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 961 447 313 30 88 chr4 49324169 49324295 -106305825 + L1MA6 LINE L1 1518 1617 -5232 4 961 1288 61 0 0 chr4 49324295 49324442 -106305678 - B1_Mus2 SINE Alu 0 147 1 4 961 454 314 30 85 chr4 49324442 49324928 -106305192 + L1MA6 LINE L1 1618 2115 -4734 4 961 312 303 37 15 chr4 49325060 49325194 -106304926 + L1MA6 LINE L1 2385 2521 -4328 4 961 1684 273 85 35 chr4 49325197 49326036 -106304084 + L1MA6 LINE L1 4538 5418 -1427 4 961 338 301 195 11 chr4 49326077 49326339 -106303781 + L1MA6 LINE L1 5560 5869 -976 4 961 291 259 37 0 chr4 49326492 49326600 -106303520 + L1MA6 LINE L1 5864 5975 -870 4 961 414 288 29 9 chr4 49326644 49326749 -106303371 + ID_B1 SINE B4 82 188 -36 4 961 784 251 109 32 chr4 49326754 49327092 -106303028 + L1MA6 LINE L1 6019 6382 -620 4 961 297 0 0 0 chr4 49327094 49327127 -106302993 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 961 252 0 0 0 chr4 49327127 49327154 -106302966 + (CG)n Simple_repeat Simple_repeat 2 29 0 4 961 181 163 41 0 chr4 49327282 49327331 -106302789 + CT-rich Low_complexity Low_complexity 2 52 0 4 961 1723 303 73 77 chr4 49327557 49327770 -106302350 + Lx8 LINE L1 6519 6754 -719 4 961 423 56 0 0 chr4 49327770 49327824 -106302296 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 961 1723 303 73 77 chr4 49327824 49328259 -106301861 + Lx8 LINE L1 6755 7173 -300 4 961 1673 158 127 62 chr4 49328259 49328452 -106301668 + RMER17C LTR ERVK 1 179 -231 4 961 675 67 0 0 chr4 49328452 49328541 -106301579 + (TCTCCC)n Simple_repeat Simple_repeat 4 92 0 4 961 1673 158 127 62 chr4 49328541 49328732 -106301388 + RMER17C LTR ERVK 180 410 0 4 961 1723 303 73 77 chr4 49328732 49329029 -106301091 + Lx8 LINE L1 7174 7460 -13 4 961 21 0 0 0 chr4 49329803 49329824 -106300296 + AT_rich Low_complexity Low_complexity 1 21 0 4 961 415 254 138 115 chr4 49330028 49330218 -106299902 + L1MA6 LINE L1 6590 6782 -220 4 961 686 251 39 16 chr4 49330218 49330400 -106299720 - B3A SINE B2 -10 188 3 4 961 415 254 138 115 chr4 49330400 49330609 -106299511 + L1MA6 LINE L1 6783 6997 -5 4 961 227 273 0 43 chr4 49330744 49330905 -106299215 + (CATA)n Simple_repeat Simple_repeat 4 157 0 4 961 815 299 154 21 chr4 49330933 49331355 -106298765 + MLT1D LTR MaLR 14 504 -1 4 961 918 257 14 14 chr4 49331595 49331816 -106298304 + ID_B1 SINE B4 1 221 -3 4 961 1032 24 0 0 chr4 49332152 49332275 -106297845 - L1_Mus4 LINE L1 -260 6376 6254 4 961 1822 100 0 8 chr4 49332275 49332527 -106297593 + L1_Mus4 LINE L1 6381 6630 -6 4 961 2373 114 0 6 chr4 49333008 49333335 -106296785 + Lx LINE L1 6326 6650 -4 4 961 220 299 208 34 chr4 49333388 49333537 -106296583 - MIR3 SINE MIR -25 183 9 4 961 354 262 37 18 chr4 49334623 49334732 -106295388 + L1MA6 LINE L1 6178 6288 -12 4 961 215 222 91 80 chr4 49335208 49335296 -106294824 + B1F SINE Alu 15 103 -46 4 961 675 0 0 0 chr4 49336134 49336209 -106293911 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 961 191 302 19 0 chr4 49338221 49338274 -106291846 - MIRb SINE MIR -89 179 126 5 961 518 312 31 5 chr4 49338857 49339050 -106291070 - MER2 DNA MER2_type -19 326 129 5 961 238 347 0 14 chr4 49339166 49339239 -106290881 - MER2 DNA MER2_type -272 73 2 5 961 329 240 21 0 chr4 49340154 49340250 -106289870 + B3 SINE B2 118 215 -1 5 961 39271 10 0 2 chr4 49341388 49347641 -106282479 + L1Md_A LINE L1 1 5586 -297 5 961 9600 4 0 0 chr4 49347641 49348637 -106281483 + L1Md_A LINE L1 5587 6582 0 5 961 210 71 0 0 chr4 49348654 49348682 -106281438 + (A)n Simple_repeat Simple_repeat 1 28 0 5 961 1119 129 0 0 chr4 49349318 49349496 -106280624 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 961 253 182 10 10 chr4 49349496 49349596 -106280524 + (CAA)n Simple_repeat Simple_repeat 1 100 0 5 961 182 265 115 58 chr4 49349599 49349703 -106280417 - MER5A DNA MER1_type -45 144 35 5 961 21 36 0 0 chr4 49349875 49349903 -106280217 + AT_rich Low_complexity Low_complexity 1 28 0 5 961 4174 55 0 0 chr4 49353914 49354389 -106275731 - L1_Mus1 LINE L1 -4 6563 6089 5 961 454 253 74 0 chr4 49354566 49354661 -106275459 + RSINE1 SINE B4 3 104 -61 5 961 21 57 0 0 chr4 49354661 49354696 -106275424 + AT_rich Low_complexity Low_complexity 1 35 0 5 961 253 140 0 23 chr4 49354713 49354757 -106275363 + MER66C LTR ERV1 454 496 -59 5 961 219 345 66 41 chr4 49357037 49357158 -106272962 - L2b LINE L2 -12 3363 3240 5 961 1344 31 0 0 chr4 49357622 49357783 -106272337 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 5 961 370 316 40 10 chr4 49357870 49357969 -106272151 + B3A SINE B2 82 183 -15 5 961 270 0 0 0 chr4 49358446 49358476 -106271644 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 961 1188 58 0 0 chr4 49358476 49358613 -106271507 - B1_Mus2 SINE Alu -10 137 1 5 961 324 244 62 62 chr4 49358620 49358716 -106271404 - B3A SINE B2 -100 98 3 5 961 272 221 66 20 chr4 49359243 49359342 -106270778 + L1MEe LINE L1 1334 1438 -4570 5 961 435 19 0 0 chr4 49361501 49361553 -106268567 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 961 5349 154 51 21 chr4 49361629 49363364 -106266756 + L1_Mur1 LINE L1 420 2163 -3723 5 961 30128 113 9 8 chr4 49364402 49370106 -106260014 - L1_Mus3 LINE L1 -193 6445 738 5 961 2148 142 65 76 chr4 49370106 49370503 -106259617 + RLTR9C LTR ERVK 1 393 0 5 961 4061 178 48 90 chr4 49370617 49371725 -106258395 + MMETn-int LTR ERVK 109 1169 -3675 5 961 2781 147 25 11 chr4 49371752 49372226 -106257894 + ETnERV2-int LTR ERVK 2496 2976 -4430 5 961 3974 180 28 21 chr4 49372485 49373456 -106256664 + ETnERV2-int LTR ERVK 2411 4085 -3321 5 961 33532 78 3 5 chr4 49373457 49379074 -106251046 + L1Md_F2 LINE L1 98 5586 -297 5 961 8653 48 0 3 chr4 49379075 49380073 -106250047 + L1Md_F2 LINE L1 5588 6582 0 5 961 1722 178 20 58 chr4 49380073 49380478 -106249642 + MMETn-int LTR ERVK 2436 2792 -2052 5 961 983 111 35 0 chr4 49380478 49380622 -106249498 - B1_Mur4 SINE Alu 0 150 2 5 961 1630 172 41 104 chr4 49380622 49381297 -106248823 + MMETn-int LTR ERVK 3869 4176 -1230 5 961 502 97 0 0 chr4 49381513 49381585 -106248535 + MMETn-int LTR ERVK 7331 7402 -4 5 961 2311 146 55 75 chr4 49381594 49381995 -106248125 + RLTR9C LTR ERVK 1 393 0 5 961 1751 189 0 64 chr4 49381995 49382352 -106247768 - L1VL1 LINE L1 -5895 527 194 5 961 12937 65 2 2 chr4 49382883 49384946 -106245174 + L1Md_F2 LINE L1 4227 6287 -295 5 961 1257 83 0 22 chr4 49384946 49385130 -106244990 + L1Md_F2 LINE L1 6391 6570 -12 5 961 729 53 0 0 chr4 49385978 49386072 -106244048 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 5 961 1465 88 0 0 chr4 49386098 49386291 -106243829 - L1_Mus1 LINE L1 0 6567 6375 5 961 195 100 0 0 chr4 49386517 49386547 -106243573 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 961 4523 38 2 8 chr4 49386704 49387210 -106242910 + RLTR1C LTR ERV1 1 503 0 5 961 512 16 0 0 chr4 49387507 49387569 -106242551 - MTB LTR MaLR -130 270 209 5 961 964 97 7 14 chr4 49387552 49387698 -106242422 + MTB LTR MaLR 256 400 0 5 961 8000 100 14 4 chr4 49387698 49388785 -106241335 + MTB-int LTR MaLR 1 1098 0 5 961 3189 80 5 2 chr4 49388785 49389184 -106240936 + MTB LTR MaLR 1 400 0 5 961 16479 109 8 7 chr4 49389184 49392689 -106237431 + Lx3A LINE L1 3475 6978 -3 5 961 231 271 34 0 chr4 49393821 49393880 -106236240 + B4A SINE B4 81 141 -151 5 961 449 252 28 0 chr4 49393831 49393938 -106236182 + PB1D10 SINE Alu 6 115 -2 5 961 358 252 96 48 chr4 49394066 49394191 -106235929 + B4A SINE B4 1 131 -161 5 961 216 0 0 0 chr4 49394406 49394430 -106235690 + (T)n Simple_repeat Simple_repeat 1 24 0 5 961 2871 267 64 21 chr4 49394986 49395919 -106234201 + RCHARR1 DNA MER1_type 1 973 -1 5 961 10232 21 0 0 chr4 49397074 49398237 -106231883 + L1Md_T LINE L1 4424 5586 -297 5 961 9033 32 0 0 chr4 49398238 49399232 -106230888 + L1Md_T LINE L1 5588 6581 -1 5 961 207 0 0 0 chr4 49399350 49399373 -106230747 + (A)n Simple_repeat Simple_repeat 1 23 0 5 961 217 233 16 16 chr4 49399580 49399641 -106230479 + CT-rich Low_complexity Low_complexity 1 61 0 5 961 225 0 0 0 chr4 49400224 49400249 -106229871 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 961 606 109 23 0 chr4 49400340 49400468 -106229652 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 961 542 241 139 0 chr4 49400489 49400516 -106229604 - RSINE1 SINE B4 0 165 139 5 961 186 103 0 0 chr4 49400516 49400545 -106229575 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 5 961 542 241 139 0 chr4 49400545 49400654 -106229466 - RSINE1 SINE B4 -27 138 12 5 961 408 289 21 36 chr4 49400880 49401020 -106229100 + B1F2 SINE Alu 1 138 -11 5 961 450 103 0 0 chr4 49401020 49401098 -106229022 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 961 234 105 0 0 chr4 49401100 49401138 -106228982 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 961 255 268 49 0 chr4 49401832 49401914 -106228206 + L1MEe LINE L1 199 284 -4570 5 961 312 266 119 17 chr4 49402384 49402560 -106227560 + L1MA7 LINE L1 6047 6240 -51 5 961 276 252 47 0 chr4 49402957 49403064 -106227056 + L1MA6 LINE L1 5162 5273 -870 5 961 414 288 29 9 chr4 49403107 49403212 -106226908 + ID_B1 SINE B4 82 188 -36 5 961 773 248 109 35 chr4 49403217 49403556 -106226564 + L1MA6 LINE L1 5317 5680 -620 5 961 378 0 0 0 chr4 49403559 49403601 -106226519 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 961 197 173 58 0 chr4 49403735 49403787 -106226333 + CT-rich Low_complexity Low_complexity 4 58 0 5 961 1969 297 72 59 chr4 49404013 49404230 -106225890 + Lx8 LINE L1 6519 6758 -715 5 961 423 0 0 0 chr4 49404230 49404277 -106225843 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 961 1969 297 72 59 chr4 49404277 49404692 -106225428 + Lx8 LINE L1 6759 7173 -300 5 961 1691 156 133 60 chr4 49404692 49404886 -106225234 + RMER17C LTR ERVK 1 180 -230 5 961 483 48 0 0 chr4 49404886 49404948 -106225172 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 961 1691 156 133 60 chr4 49404948 49405135 -106224985 + RMER17C LTR ERVK 181 409 -1 5 961 1969 297 72 59 chr4 49405135 49405432 -106224688 + Lx8 LINE L1 7174 7460 -13 5 961 407 265 128 103 chr4 49406420 49406609 -106223511 + L1MA6 LINE L1 5888 6088 -212 5 961 666 257 39 16 chr4 49406609 49406791 -106223329 - B3A SINE B2 -10 188 3 5 961 407 265 128 103 chr4 49406791 49407000 -106223120 + L1MA6 LINE L1 6089 6296 -4 5 961 239 273 0 43 chr4 49407135 49407296 -106222824 + (CATA)n Simple_repeat Simple_repeat 4 157 0 5 961 810 298 146 15 chr4 49407324 49407746 -106222374 + MLT1D LTR MaLR 14 504 -1 5 961 930 252 14 14 chr4 49407987 49408208 -106221912 + ID_B1 SINE B4 1 221 -3 5 961 1032 24 0 0 chr4 49408543 49408666 -106221454 - L1_Mus4 LINE L1 -260 6376 6254 5 961 1822 96 0 8 chr4 49408666 49408918 -106221202 + L1_Mus4 LINE L1 6381 6630 -6 5 961 2357 117 0 6 chr4 49409400 49409728 -106220392 + Lx LINE L1 6326 6651 -3 5 961 220 299 208 34 chr4 49409781 49409930 -106220190 - MIR3 SINE MIR -25 183 9 5 961 390 36 0 0 chr4 49411037 49411092 -106219028 + L1Md_T LINE L1 6528 6582 0 5 961 249 33 0 0 chr4 49411375 49411405 -106218715 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 961 22 0 0 0 chr4 49412904 49412926 -106217194 + AT_rich Low_complexity Low_complexity 1 22 0 5 961 191 302 19 0 chr4 49413440 49413493 -106216627 - MIRb SINE MIR -89 179 126 5 120 30016 27 0 0 chr4 49414101 49417625 -106212495 + L1_Mm LINE L1 1387 4910 -973 5 962 758 175 0 6 chr4 49418973 49419151 -106210969 + GA-rich Low_complexity Low_complexity 3 179 0 5 962 282 219 0 12 chr4 49419151 49419234 -106210886 + (CAA)n Simple_repeat Simple_repeat 1 82 0 5 962 217 255 115 58 chr4 49419237 49419341 -106210779 - MER5A DNA MER1_type -45 144 35 5 962 210 91 0 0 chr4 49419491 49419524 -106210596 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 962 1570 11 0 0 chr4 49419838 49420013 -106210107 - L1Md_A LINE L1 -493 6089 5915 5 962 1559 6 0 0 chr4 49420013 49420206 -106209914 + L1Md_A LINE L1 6407 6582 0 5 962 236 54 54 0 chr4 49420215 49420252 -106209868 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 5 962 4092 59 0 8 chr4 49423966 49424445 -106205675 - L1_Mus1 LINE L1 -4 6563 6089 5 962 508 232 74 0 chr4 49424622 49424717 -106205403 + RSINE1 SINE B4 3 104 -61 5 962 230 163 0 23 chr4 49424771 49424815 -106205305 + MER66C LTR ERV1 454 496 -59 5 962 4637 10 0 0 chr4 49426044 49426526 -106203594 + LTRIS_Mm LTR ERV1 1 482 0 5 962 202 333 74 33 chr4 49427591 49427712 -106202408 - L2a LINE L2 -12 3414 3289 5 962 1134 72 0 0 chr4 49428176 49428329 -106201791 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 5 962 399 21 0 0 chr4 49428330 49428378 -106201742 + (TGAG)n Simple_repeat Simple_repeat 1 48 0 5 962 359 333 37 28 chr4 49428432 49428540 -106201580 + B3A SINE B2 82 190 -8 5 962 297 314 81 103 chr4 49428946 49429015 -106201105 - B3A SINE B2 -26 172 104 5 962 450 0 0 0 chr4 49429015 49429065 -106201055 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 962 1188 58 0 0 chr4 49429065 49429202 -106200918 - B1_Mus2 SINE Alu -10 137 1 5 962 297 314 81 103 chr4 49429202 49429305 -106200815 - B3A SINE B2 -95 103 4 5 962 260 258 56 10 chr4 49429832 49429931 -106200189 + L1MEe LINE L1 1334 1438 -4570 5 962 21 36 0 0 chr4 49431170 49431198 -106198922 + AT_rich Low_complexity Low_complexity 1 28 0 5 962 363 23 0 0 chr4 49431973 49432017 -106198103 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 962 4799 141 26 63 chr4 49432092 49433292 -106196828 + L1_Mur1 LINE L1 449 1565 -4321 5 962 14413 96 29 8 chr4 49433286 49436081 -106194039 + L1Md_F LINE L1 410 3264 -2619 5 962 38354 42 5 8 chr4 49436080 49442353 -106187767 + L1Md_F2 LINE L1 1 6254 -328 5 962 649 91 64 0 chr4 49442353 49442463 -106187657 + L1Md_F2 LINE L1 6464 6580 -2 5 962 3920 124 3 2 chr4 49442463 49443076 -106187044 + L1_Mur1 LINE L1 1553 2166 -3720 5 962 4927 128 20 0 chr4 49444252 49444941 -106185179 - ETnERV2-int LTR ERVK -211 7195 6493 6 962 1382 309 41 23 chr4 49444957 49445514 -106184606 - RNERVK23-int LTR ERVK -371 7846 7280 6 962 784 343 48 40 chr4 49445050 49445576 -106184544 - MuRRS4-int LTR ERV1 -177 4886 4357 6 962 467 212 36 57 chr4 49446401 49446541 -106183579 - RNERVK23-int LTR ERVK -1886 6331 6195 6 962 667 193 33 25 chr4 49447467 49447589 -106182531 - ETnERV2-int LTR ERVK -214 7192 7070 6 962 23669 123 18 5 chr4 49449138 49449152 -106180968 - L1VL1 LINE L1 -905 4978 4965 6 962 6506 109 7 5 chr4 49449152 49450043 -106180077 - L1_Mus3 LINE L1 0 6638 5746 6 962 23669 120 16 14 chr4 49450043 49454586 -106175534 - L1VL1 LINE L1 -919 4964 410 6 962 600 53 0 0 chr4 49455953 49456029 -106174091 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 6 962 1527 80 0 0 chr4 49456045 49456255 -106173865 - L1_Mus1 LINE L1 0 6567 6375 6 962 527 0 0 0 chr4 49456941 49457003 -106173117 - MTB LTR MaLR -130 270 209 6 962 949 97 7 14 chr4 49456986 49457132 -106172988 + MTB LTR MaLR 256 400 0 6 962 2571 96 88 0 chr4 49457132 49457529 -106172591 + MTB-int LTR MaLR 1 432 -666 6 962 585 98 32 11 chr4 49457525 49457618 -106172502 + MTB LTR MaLR 306 400 0 6 962 9101 109 12 8 chr4 49457643 49459869 -106170251 + Lx3A LINE L1 4748 6978 -3 6 962 267 31 0 0 chr4 49460048 49460080 -106170040 + (A)n Simple_repeat Simple_repeat 1 32 0 6 962 1070 123 0 0 chr4 49461048 49461219 -106168901 + MT-int LTR MaLR 1 171 -927 6 962 407 239 11 11 chr4 49461219 49461312 -106168808 + PB1D10 SINE Alu 23 115 -2 6 962 438 258 22 45 chr4 49461437 49461571 -106168549 + B4A SINE B4 1 131 -161 6 962 2730 262 57 68 chr4 49462357 49462842 -106167278 + RCHARR1 DNA MER1_type 1 468 -506 6 962 1192 77 0 0 chr4 49462842 49462985 -106167135 - B1_Mus2 SINE Alu 0 147 5 6 962 2730 262 57 68 chr4 49462985 49463483 -106166637 + RCHARR1 DNA MER1_type 469 973 -1 6 962 222 222 11 22 chr4 49464834 49464926 -106165194 + CT-rich Low_complexity Low_complexity 1 91 0 6 962 395 78 16 0 chr4 49465650 49465714 -106164406 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 962 186 103 0 0 chr4 49465735 49465764 -106164356 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 6 962 492 211 119 0 chr4 49465764 49465873 -106164247 - RSINE1 SINE B4 -34 131 10 6 962 359 299 22 36 chr4 49466096 49466235 -106163885 + B1F2 SINE Alu 1 137 -12 6 962 436 188 16 0 chr4 49466235 49466363 -106163757 + CT-rich Low_complexity Low_complexity 1 130 0 6 962 216 0 0 0 chr4 49466790 49466814 -106163306 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 962 475 257 8 34 chr4 49466823 49466940 -106163180 - ID_B1 SINE B4 -4 220 107 6 962 799 131 0 20 chr4 49467717 49467865 -106162255 + CT-rich Low_complexity Low_complexity 3 147 0 6 962 460 263 246 50 chr4 49468513 49468676 -106161444 - B4 SINE B4 -80 212 8 6 962 411 21 0 0 chr4 49469483 49469531 -106160589 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 962 1364 320 81 37 chr4 49469655 49470468 -106159652 + Charlie6 DNA MER1_type 102 950 -2550 6 962 523 352 0 37 chr4 49470511 49470673 -106159447 + RSINE1 SINE B4 2 157 -8 6 962 226 336 30 38 chr4 49470934 49471067 -106159053 - MamGypLTR1c LTR Gypsy 0 803 672 6 962 288 0 0 0 chr4 49471082 49471114 -106159006 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 962 892 93 7 14 chr4 49471337 49471479 -106158641 + (GAAA)n Simple_repeat Simple_repeat 3 143 0 6 962 503 275 25 6 chr4 49472376 49472537 -106157583 - MER3 DNA MER1_type -45 164 1 6 962 192 333 134 10 chr4 49472547 49472644 -106157476 + L2b LINE L2 3259 3367 -8 6 962 601 197 91 9 chr4 49472929 49473149 -106156971 + RMER17C LTR ERVK 1 238 -172 6 962 39105 47 2 2 chr4 49473271 49480244 -106149876 - L1Md_T LINE L1 -1 6584 1 6 962 599 168 96 108 chr4 49480244 49480484 -106149636 + RMER17C LTR ERVK 166 402 -8 6 962 758 231 32 34 chr4 49480969 49481223 -106148897 + RMER10A LTR ERVL 41 279 -119 6 962 2863 204 44 44 chr4 49482395 49483192 -106146928 + RLTR22_Mur LTR ERVK 1 789 -1019 6 962 1191 95 0 0 chr4 49483192 49483339 -106146781 + B1_Mus1 SINE Alu 1 147 -1 6 962 342 0 0 0 chr4 49483339 49483377 -106146743 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 962 2648 225 54 58 chr4 49483377 49483436 -106146684 + RLTR22_Mur LTR ERVK 790 853 -955 6 962 3001 96 11 13 chr4 49483946 49484391 -106145729 + L1Md_F2 LINE L1 5168 5586 -297 6 962 8648 47 1 3 chr4 49484392 49485383 -106144737 + L1Md_F2 LINE L1 5588 6576 -6 6 962 775 201 116 84 chr4 49485411 49485721 -106144399 + RLTR19-int LTR ERVK 3525 3844 -2293 6 962 1350 160 33 25 chr4 49485832 49486108 -106144012 + RMER10A LTR ERVL 165 442 0 6 962 433 219 16 58 chr4 49486436 49486625 -106143495 + RMER17C LTR ERVK 97 277 -133 6 962 180 360 43 43 chr4 49486952 49487045 -106143075 - MER5A DNA MER1_type -28 161 69 6 962 555 211 29 0 chr4 49487178 49487282 -106142838 + U6 snRNA snRNA 1 107 0 6 962 2996 117 83 0 chr4 49487517 49487926 -106142194 + RLTR41 LTR ERV1 1 443 -3 6 962 180 0 0 0 chr4 49488326 49488346 -106141774 + (TAG)n Simple_repeat Simple_repeat 1 20 0 6 962 342 307 24 76 chr4 49488346 49488572 -106141548 + RLTR6-int LTR ERV1 583 901 -6877 6 962 213 39 0 0 chr4 49488785 49488811 -106141309 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 962 931 320 56 44 chr4 49488982 49489467 -106140653 + RLTR6-int LTR ERV1 1467 1984 -5794 6 962 399 221 23 196 chr4 49489458 49489672 -106140448 + RLTR6-int LTR ERV1 2111 2287 -5491 6 962 865 163 116 0 chr4 49490205 49490352 -106139768 + RMER1A Other Other 423 586 -444 6 962 1841 228 50 43 chr4 49490393 49490857 -106139263 + RMER19C LTR ERVK 138 604 -7 6 962 1098 125 12 6 chr4 49490860 49491029 -106139091 + B2_Mm2 SINE B2 17 186 -9 6 962 516 169 0 0 chr4 49491041 49491118 -106139002 + RMER1A Other Other 583 659 -371 6 962 853 175 28 0 chr4 49491118 49491261 -106138859 + RLTR13D5 LTR ERVK 1 147 -876 6 962 362 145 97 0 chr4 49491261 49491323 -106138797 - ETnERV2-int LTR ERVK -3897 3509 3442 6 962 1078 99 43 32 chr4 49491653 49491841 -106138279 - RLTR13D1 LTR ERVK -156 650 461 6 962 661 147 43 8 chr4 49491841 49491958 -106138162 - ETnERV2-int LTR ERVK -4001 3405 3285 6 962 728 160 31 19 chr4 49491934 49492093 -106138027 - ETnERV2-int LTR ERVK -4271 3135 2975 6 962 658 120 36 27 chr4 49492074 49492185 -106137935 - ETnERV2-int LTR ERVK -4801 2605 2494 6 962 5205 158 80 32 chr4 49492176 49493461 -106136659 - ETnERV2-int LTR ERVK -5162 2244 108 6 962 367 181 35 71 chr4 49493477 49493590 -106136530 - ETnERV2-int LTR ERVK -3204 110 2 6 962 2603 105 26 84 chr4 49493591 49494008 -106136112 - RLTR9C LTR ERVK 0 393 1 6 962 1230 62 0 14 chr4 49494180 49494328 -106135792 + B1_Mus1 SINE Alu 1 146 -2 6 962 268 43 43 0 chr4 49494332 49494378 -106135742 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 6 962 1681 191 88 24 chr4 49494403 49495054 -106135066 + ORR1C1-int LTR MaLR 1093 1792 0 6 962 923 221 9 17 chr4 49495502 49495732 -106134388 + L1_Mur3 LINE L1 879 1106 -6622 6 962 9301 164 26 42 chr4 49495730 49495919 -106134201 + L1_Mur3 LINE L1 1888 2056 -3824 6 962 411 118 0 0 chr4 49495919 49495995 -106134125 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 962 9301 164 26 42 chr4 49495995 49496609 -106133511 + L1_Mur3 LINE L1 2057 2677 -3203 6 962 1296 48 0 0 chr4 49496609 49496756 -106133364 + B1_Mus2 SINE Alu 1 147 0 6 962 9301 164 26 42 chr4 49496756 49497960 -106132160 + L1_Mur3 LINE L1 2678 3862 -2018 6 962 405 224 24 0 chr4 49499474 49499559 -106130561 + B4A SINE B4 2 88 -204 6 962 280 241 0 17 chr4 49499937 49499996 -106130124 + B4A SINE B4 5 62 -230 6 962 21 0 0 0 chr4 49500548 49500569 -106129551 + AT_rich Low_complexity Low_complexity 1 21 0 1 962 2456 31 0 0 chr4 49501114 49501405 -106128715 + ORR1A0 LTR MaLR 1 291 -55 2 962 1646 46 20 0 chr4 49501405 49501601 -106128519 + L1Md_T LINE L1 6383 6582 0 3 962 486 0 0 0 chr4 49501696 49501751 -106128369 + ORR1A0 LTR MaLR 292 346 0 2 962 230 122 24 0 chr4 49501846 49501887 -106128233 - B3 SINE B2 -174 42 1 4 962 226 325 13 0 chr4 49503545 49503622 -106126498 + ID4 SINE ID 2 79 -4 5 962 1169 66 0 0 chr4 49504326 49504462 -106125658 + B1_Mus2 SINE Alu 2 137 -10 6 962 486 0 0 0 chr4 49504462 49504516 -106125604 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 962 929 300 14 43 chr4 49504891 49505173 -106124947 + B4 SINE B4 1 274 -18 8 962 567 0 0 0 chr4 49505181 49505244 -106124876 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 962 246 105 0 0 chr4 49505323 49505361 -106124759 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 962 245 301 23 35 chr4 49505369 49505455 -106124665 - RMER12 LTR ERVK -500 822 738 1 962 3515 62 89 0 chr4 49505613 49506049 -106124071 + MT2C_Mm LTR ERVL 1 475 0 1 962 19202 80 12 9 chr4 49506049 49509044 -106121076 + MERVL-int LTR ERVL 1 3137 -2624 1 962 1993 141 130 30 chr4 49509044 49509476 -106120644 + IAPLTR2_Mm LTR ERVK 1 475 0 1 962 19455 53 9 2 chr4 49509476 49511811 -106118309 + MERVL-int LTR ERVL 3030 5380 -105 1 962 330 139 26 53 chr4 49511904 49511980 -106118140 + ORR1A3-int LTR MaLR 567 640 -1323 1 962 322 0 0 0 chr4 49511980 49512018 -106118102 + MERVL-int LTR ERVL 5448 5485 0 1 962 3825 75 19 0 chr4 49512020 49512484 -106117636 + MT2C_Mm LTR ERVL 3 475 0 1 962 2313 162 80 23 chr4 49512768 49513146 -106116974 + RLTR16 LTR ERVK 6 401 -104 1 962 369 0 0 0 chr4 49513146 49513187 -106116933 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 962 2313 162 80 23 chr4 49513187 49513281 -106116839 + RLTR16 LTR ERVK 402 504 -1 1 962 522 31 0 0 chr4 49514030 49514094 -106116026 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 962 1296 176 14 0 chr4 49514344 49514678 -106115442 + RMER20A LTR ERVK 1 373 -143 1 962 284 132 32 21 chr4 49515014 49515107 -106115013 + A-rich Low_complexity Low_complexity 5 98 0 1 962 267 242 0 0 chr4 49517363 49517462 -106112658 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 962 424 262 141 54 chr4 49517465 49517490 -106112630 - RSINE1 SINE B4 0 165 142 2 962 528 16 0 0 chr4 49517490 49517551 -106112569 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 962 424 262 141 54 chr4 49517551 49517674 -106112446 - RSINE1 SINE B4 -24 141 4 2 962 379 331 74 65 chr4 49517966 49518036 -106112084 + L1MEg LINE L1 1012 1081 -5003 2 962 1426 87 22 0 chr4 49518036 49518220 -106111900 + B2_Mm2 SINE B2 1 188 -7 2 962 379 331 74 65 chr4 49518220 49518485 -106111635 + L1MEg LINE L1 1082 1350 -4734 2 962 246 143 48 0 chr4 49518563 49518575 -106111545 + MT2B2 LTR ERVL 244 257 -327 2 962 424 95 0 0 chr4 49518575 49518638 -106111482 + B1_Mur3 SINE Alu 1 63 -86 2 962 936 91 0 0 chr4 49518646 49518778 -106111342 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 2 962 293 323 224 47 chr4 49519090 49519558 -106110562 - MER76 LTR ERVL 0 691 141 2 962 441 211 64 9 chr4 49519565 49519675 -106110445 + PB1D10 SINE Alu 2 117 0 2 962 259 286 162 76 chr4 49519738 49519935 -106110185 - MLT1G3 LTR MaLR -181 414 201 3 962 988 257 28 5 chr4 49520216 49520427 -106109693 + B3 SINE B2 1 216 0 3 962 319 68 0 0 chr4 49520461 49520505 -106109615 + MT2B LTR ERVL 1 44 -557 3 962 280 100 0 0 chr4 49520511 49520551 -106109569 + MERVL_2A-int LTR ERVL 5651 5690 -71 3 962 641 181 36 7 chr4 49520549 49520688 -106109432 + MERVL_2A-int LTR ERVL 5619 5761 0 3 962 918 215 85 141 chr4 49520688 49520770 -106109350 + MT2A LTR ERVL 1 85 -448 3 962 1118 105 6 0 chr4 49520770 49520942 -106109178 + (TCC)n Simple_repeat Simple_repeat 3 175 0 3 962 918 215 85 141 chr4 49520942 49521178 -106108942 + MT2A LTR ERVL 86 301 -232 3 962 220 189 37 19 chr4 49522370 49522424 -106107696 + (TATG)n Simple_repeat Simple_repeat 3 57 0 3 962 1053 70 44 19 chr4 49522774 49522933 -106107187 - L1Md_F2 LINE L1 0 6582 6420 3 962 229 259 97 134 chr4 49523098 49523232 -106106888 + RLTR41 LTR ERV1 251 379 -67 3 962 413 212 24 0 chr4 49523495 49523580 -106106540 + B4A SINE B4 2 88 -204 3 962 334 271 58 12 chr4 49523957 49524043 -106106077 + B4A SINE B4 5 94 -198 3 962 598 295 92 15 chr4 49524988 49525250 -106104870 - B4A SINE B4 -10 282 1 4 962 25 51 0 0 chr4 49525284 49525323 -106104797 + AT_rich Low_complexity Low_complexity 1 39 0 4 962 2756 122 222 8 chr4 49525717 49526198 -106103922 - RMER4B LTR ERVK -1 584 1 4 962 1188 250 171 36 chr4 49526347 49526816 -106103304 + MT2A LTR ERVL 1 532 -1 4 962 1656 193 190 3 chr4 49527727 49528080 -106102040 - MTD LTR MaLR 0 419 1 4 962 205 384 76 33 chr4 49528082 49528386 -106101734 + L2c LINE L2 2910 3226 -161 4 962 633 279 143 17 chr4 49529503 49529853 -106100267 + L1M3 LINE L1 2203 2596 -3544 4 962 437 288 91 9 chr4 49529856 49530066 -106100054 + L1M3 LINE L1 2706 2932 -3208 4 962 1768 126 125 7 chr4 49530116 49530420 -106099700 + ORR1C1 LTR MaLR 1 340 -38 4 962 3510 86 37 12 chr4 49530426 49530912 -106099208 + Lx LINE L1 6157 6654 0 4 962 512 68 0 14 chr4 49530912 49530986 -106099134 + (GAAAA)n Simple_repeat Simple_repeat 5 77 0 4 962 226 81 135 0 chr4 49530989 49531026 -106099094 + ORR1C1 LTR MaLR 314 355 -12 4 962 412 316 0 0 chr4 49531131 49531226 -106098894 + B4A SINE B4 160 254 -38 5 962 191 103 26 0 chr4 49531228 49531267 -106098853 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 962 1653 208 14 30 chr4 49531302 49531664 -106098456 + MTD LTR MaLR 2 357 -62 5 962 379 150 43 29 chr4 49531906 49531999 -106098121 + MTC LTR MaLR 281 421 0 5 962 362 197 68 73 chr4 49532016 49532208 -106097912 + L1M3 LINE L1 2983 3173 -2970 4 962 840 213 41 71 chr4 49532439 49532636 -106097484 + B3A SINE B2 2 192 -6 5 962 471 258 145 15 chr4 49532644 49533011 -106097109 + L1M3 LINE L1 4311 4751 -1392 4 962 240 111 0 0 chr4 49534674 49534710 -106095410 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 5 962 195 129 0 0 chr4 49534792 49534823 -106095297 + (T)n Simple_repeat Simple_repeat 1 31 0 5 962 326 234 50 50 chr4 49535261 49535360 -106094760 + MurSatRep1 Unknown Unknown 647 745 -1392 5 962 197 300 128 73 chr4 49535530 49535943 -106094177 + L2 LINE L2 282 717 -2702 5 962 187 93 23 23 chr4 49535948 49535992 -106094128 + (CCA)n Simple_repeat Simple_repeat 2 45 0 5 962 392 217 2 2 chr4 49536517 49536611 -106093509 - B1_Mur1 SINE Alu 0 149 56 6 962 267 253 0 62 chr4 49536585 49536665 -106093455 - ID4 SINE ID -7 76 2 6 962 451 275 0 35 chr4 49536929 49537042 -106093078 - PB1D10 SINE Alu -5 112 4 6 962 302 321 146 35 chr4 49537194 49537365 -106092755 + MIR SINE MIR 47 236 -26 6 962 232 241 49 25 chr4 49537635 49537716 -106092404 + L2c LINE L2 3298 3380 -7 6 962 237 227 23 0 chr4 49538498 49538542 -106091578 + MER58C DNA MER1_type 13 57 -158 6 962 930 191 37 37 chr4 49538969 49539187 -106090933 - RLTR25A LTR ERVK -696 407 190 6 962 438 36 0 0 chr4 49539980 49540036 -106090084 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 962 1245 42 0 0 chr4 49540067 49540201 -106089919 + B1_Mus2 SINE Alu 5 138 -9 6 962 513 0 0 0 chr4 49540201 49540258 -106089862 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 962 279 0 0 0 chr4 49540827 49540858 -106089262 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 962 263 293 52 26 chr4 49541606 49541683 -106088437 + AluG_3 SINE Alu 142 220 -91 7 962 24 32 0 0 chr4 49541708 49541739 -106088381 + AT_rich Low_complexity Low_complexity 1 31 0 7 962 406 296 19 19 chr4 49542143 49542764 -106087356 + MMSAT4 Satellite Satellite 1 621 0 7 962 310 318 15 18 chr4 49542799 49543105 -106087015 + MMSAT4 Satellite Satellite 1 305 0 7 962 430 304 12 12 chr4 49543219 49543521 -106086599 + MMSAT4 Satellite Satellite 1 302 0 7 963 203 88 0 29 chr4 49545216 49545251 -106084869 + (GGAGAA)n Simple_repeat Simple_repeat 1 34 0 7 963 363 317 83 0 chr4 49545308 49545453 -106084667 - MER46C DNA MER2_type 0 338 182 7 963 1634 164 167 14 chr4 49545713 49546072 -106084048 - MTD LTR MaLR -5 414 1 7 963 1068 128 7 0 chr4 49547618 49547766 -106082354 - B1_Mur4 SINE Alu 0 150 2 7 963 1244 48 7 0 chr4 49548676 49548822 -106081298 + B1_Mus1 SINE Alu 2 148 0 7 963 377 260 88 38 chr4 49550334 49550494 -106079626 - Lx8 LINE L1 -2 7471 7304 8 963 194 304 0 18 chr4 49552345 49552402 -106077718 - MIRm SINE MIR -144 132 77 8 963 384 22 0 0 chr4 49552837 49552882 -106077238 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 963 1033 137 128 96 chr4 49553318 49553536 -106076584 + URR1A DNA MER1_type 2 226 0 8 963 516 32 0 0 chr4 49553596 49553658 -106076462 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 963 570 86 0 0 chr4 49553804 49553885 -106076235 + (CATA)n Simple_repeat Simple_repeat 2 82 0 8 963 286 273 202 0 chr4 49554715 49554814 -106075306 - MIRb SINE MIR -86 182 64 8 963 680 235 148 11 chr4 49554819 49555008 -106075112 + ID_B1 SINE B4 4 218 -6 8 963 520 197 76 127 chr4 49555028 49555185 -106074935 + RSINE1 SINE B4 16 164 -1 8 963 300 299 0 0 chr4 49555203 49555270 -106074850 + ID4_ SINE ID 6 72 -11 8 963 319 313 106 26 chr4 49555272 49555423 -106074697 + HAL1-3A_ME LINE L1 2276 2438 -420 9 963 331 230 0 39 chr4 49555435 49555512 -106074608 + ID2 SINE ID 2 75 -8 9 963 189 0 0 0 chr4 49556326 49556347 -106073773 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 9 963 188 214 18 0 chr4 49557010 49557066 -106073054 + C-rich Low_complexity Low_complexity 3 59 0 9 963 281 64 0 41 chr4 49557305 49557354 -106072766 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 963 2021 203 5 11 chr4 49559131 49559505 -106070615 + ORR1D1 LTR MaLR 1 372 -2 9 963 405 0 0 0 chr4 49560628 49560673 -106069447 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 963 209 278 56 0 chr4 49560959 49561031 -106069089 - MIR3 SINE MIR -19 189 114 9 963 248 214 153 72 chr4 49562545 49562656 -106067464 - MIR3 SINE MIR -11 197 78 9 963 254 175 0 34 chr4 49563019 49563078 -106067042 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 9 963 429 281 7 105 chr4 49563087 49563230 -106066890 - RSINE1 SINE B4 -24 141 13 1 963 1234 306 51 20 chr4 49563399 49563892 -106066228 - Lx8 LINE L1 0 7473 6966 1 963 2352 282 92 13 chr4 49563914 49564695 -106065425 + Lx8 LINE L1 6063 6892 -581 1 963 887 73 166 0 chr4 49564899 49565050 -106065070 + B2_Mm2 SINE B2 13 188 -7 1 963 400 241 0 0 chr4 49565262 49565345 -106064775 + B4A SINE B4 10 92 -200 1 963 421 245 10 10 chr4 49565379 49565478 -106064642 + B4A SINE B4 186 284 -8 1 963 261 0 0 0 chr4 49565524 49565553 -106064567 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 963 582 286 31 85 chr4 49566907 49567409 -106062711 - RLTR11A2 LTR ERVK -38 490 18 1 963 262 289 51 38 chr4 49567510 49567589 -106062531 + ID4_ SINE ID 2 81 -2 1 963 382 146 12 12 chr4 49568348 49568431 -106061689 + (TGG)n Simple_repeat Simple_repeat 2 84 0 1 963 193 309 29 67 chr4 49568572 49568676 -106061444 + L2b LINE L2 3276 3375 0 1 963 934 236 103 92 chr4 49568896 49569372 -106060748 - L1MB2 LINE L1 -13 6158 5678 1 963 587 314 5 35 chr4 49569396 49569594 -106060526 + B3A SINE B2 6 197 -1 1 963 276 220 17 0 chr4 49569691 49569750 -106060370 + L1MA9 LINE L1 5877 5936 -376 1 963 410 194 99 27 chr4 49570029 49570140 -106059980 - B3 SINE B2 0 216 98 1 963 1158 110 0 0 chr4 49570173 49570346 -106059774 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 963 786 248 0 0 chr4 49570358 49570507 -106059613 - B3 SINE B2 -67 149 1 1 963 184 358 65 13 chr4 49571325 49571478 -106058642 + MIRc SINE MIR 38 198 -70 1 963 232 255 0 0 chr4 49571583 49571634 -106058486 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 963 190 55 0 53 chr4 49572172 49572210 -106057910 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 963 390 21 0 0 chr4 49573693 49573740 -106056380 + (TGAG)n Simple_repeat Simple_repeat 4 50 0 1 963 3578 18 2 0 chr4 49574260 49574655 -106055465 - MTA_Mm LTR MaLR 0 396 1 1 963 9593 13 18 2 chr4 49574655 49575736 -106054384 - MTA_Mm-int LTR MaLR 0 1098 1 1 963 3578 18 2 0 chr4 49575736 49576131 -106053989 - MTA_Mm LTR MaLR 0 396 1 1 963 227 224 33 66 chr4 49576215 49576306 -106053814 - MER45B DNA Tip100 -8 1032 945 1 963 257 294 58 12 chr4 49576316 49576402 -106053718 + B4 SINE B4 9 98 -194 1 963 280 241 13 0 chr4 49576402 49576481 -106053639 + Lx7 LINE L1 7546 7625 -71 1 963 967 215 78 119 chr4 49576880 49577252 -106052868 + MT2A LTR ERVL 1 488 -113 1 963 252 0 0 0 chr4 49577256 49577284 -106052836 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 963 324 120 0 0 chr4 49577286 49577336 -106052784 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 963 268 246 14 0 chr4 49577386 49577455 -106052665 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 1 963 310 141 0 0 chr4 49577461 49577530 -106052590 + MT2A LTR ERVL 465 584 0 1 963 371 258 68 30 chr4 49577694 49577826 -106052294 + Lx5 LINE L1 6533 6669 -381 1 963 1310 255 59 41 chr4 49577819 49577973 -106052147 - Lx5 LINE L1 -548 6912 6761 1 963 351 0 0 0 chr4 49577973 49578012 -106052108 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 1 963 1541 248 49 16 chr4 49578012 49578482 -106051638 - Lx5 LINE L1 -700 6760 6054 1 963 23 0 0 0 chr4 49578687 49578710 -106051410 + AT_rich Low_complexity Low_complexity 1 23 0 1 963 1775 180 33 3 chr4 49579136 49579499 -106050621 - RLTR30 LTR ERV1 0 379 6 1 963 1169 208 44 4 chr4 49579503 49579754 -106050366 + ORR1D2 LTR MaLR 109 369 -1 1 963 404 351 32 7 chr4 49579818 49579973 -106050147 - MER45B DNA Tip100 -739 301 143 1 963 556 194 39 0 chr4 49579990 49580093 -106050027 - B1_Mur4 SINE Alu -43 107 1 1 963 365 248 130 15 chr4 49580093 49580217 -106049903 - MER45B DNA Tip100 -893 147 9 1 963 5495 108 38 17 chr4 49580753 49581578 -106048542 - Lx2 LINE L1 -647 6350 5518 1 963 1171 68 0 0 chr4 49581578 49581724 -106048396 + B1_Mm SINE Alu 1 146 -1 1 963 5495 149 5 14 chr4 49581724 49582233 -106047887 - Lx2 LINE L1 -366 5517 5009 1 963 3905 126 34 11 chr4 49582245 49582901 -106047219 + Lx2 LINE L1 6327 6997 0 1 963 194 81 27 0 chr4 49583189 49583226 -106046894 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 963 482 0 17 0 chr4 49584239 49584297 -106045823 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 963 1487 204 33 3 chr4 49584297 49584631 -106045489 + RMER4B LTR ERVK 1 344 -241 1 963 2738 62 5 13 chr4 49584581 49584971 -106045149 - MTA_Mm LTR MaLR -9 387 1 1 963 561 105 116 66 chr4 49584974 49585148 -106044972 + RMER4B LTR ERVK 288 576 -9 1 963 1823 104 0 4 chr4 49585389 49585640 -106044480 - MERVL-int LTR ERVL -5235 250 1 1 963 3737 74 2 4 chr4 49585640 49586116 -106044004 - MT2C_Mm LTR ERVL 0 475 1 1 963 213 366 58 11 chr4 49586457 49586645 -106043475 + L2a LINE L2 2959 3155 -271 1 963 819 153 30 0 chr4 49587486 49587617 -106042503 + B1_Mus1 SINE Alu 1 135 -13 1 963 240 86 0 0 chr4 49587617 49587652 -106042468 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 963 1453 236 111 5 chr4 49588800 49589213 -106040907 + Lx9 LINE L1 7181 7637 -7 1 963 256 188 0 28 chr4 49589636 49589707 -106040413 + GA-rich Low_complexity Low_complexity 4 72 0 1 963 250 342 0 0 chr4 49590164 49590243 -106039877 + MTEa LTR MaLR 287 365 -14 1 963 261 0 0 0 chr4 49590640 49590669 -106039451 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 963 328 274 96 113 chr4 49591154 49591482 -106038638 + RMER15 LTR ERVL 12 471 -104 1 963 814 289 63 36 chr4 49591822 49592124 -106037996 + RMER15-int LTR ERVL 2083 2392 -2607 1 963 250 311 94 0 chr4 49592148 49592254 -106037866 + MTE2a LTR MaLR 18 133 -246 1 963 666 322 25 47 chr4 49592196 49592555 -106037565 + MT2A LTR ERVL 75 425 -108 1 963 936 269 29 25 chr4 49592734 49592974 -106037146 + RMER15-int LTR ERVL 2396 2636 -2363 1 963 3928 255 30 77 chr4 49593073 49594356 -106035764 + RMER15-int LTR ERVL 3774 4996 -3 1 963 524 194 101 157 chr4 49594551 49594675 -106035445 + RMER15 LTR ERVL 305 401 -174 1 963 1061 120 72 0 chr4 49594675 49594842 -106035278 - B2_Mm2 SINE B2 -16 179 1 1 963 524 194 101 157 chr4 49594842 49594978 -106035142 + RMER15 LTR ERVL 402 545 -30 1 963 500 0 17 0 chr4 49594978 49595038 -106035082 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 963 524 194 101 157 chr4 49595038 49595063 -106035057 + RMER15 LTR ERVL 546 574 -1 1 963 363 277 60 72 chr4 49596482 49596649 -106033471 + B3A SINE B2 48 212 -4 1 963 792 292 102 4 chr4 49597543 49597808 -106032312 + B4A SINE B4 2 292 0 1 963 185 277 0 0 chr4 49600853 49600900 -106029220 + MIR SINE MIR 98 144 -64 1 963 549 267 29 62 chr4 49600998 49601206 -106028914 + B4 SINE B4 26 226 -66 1 963 451 281 16 71 chr4 49601208 49601392 -106028728 + B4 SINE B4 1 174 -118 1 963 2649 62 124 0 chr4 49601880 49602236 -106027884 - MTB LTR MaLR 0 400 1 1 963 234 200 17 0 chr4 49603849 49603909 -106026211 + GA-rich Low_complexity Low_complexity 1 61 0 1 963 616 113 0 10 chr4 49603913 49604011 -106026109 + URR1B DNA MER1_type 129 225 0 1 963 2564 162 106 20 chr4 49604500 49604913 -106025207 + Lx9 LINE L1 5266 5714 -133 1 963 306 0 0 0 chr4 49604913 49604947 -106025173 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 963 2564 222 111 24 chr4 49604947 49605283 -106024837 + Lx9 LINE L1 5715 6093 -1551 1 963 2168 191 42 16 chr4 49605292 49605745 -106024375 + Lx9 LINE L1 6859 7323 -321 1 963 1299 82 44 0 chr4 49605767 49605980 -106024140 + ORR1A2 LTR MaLR 105 329 0 1 963 27 29 0 0 chr4 49606283 49606317 -106023803 + AT_rich Low_complexity Low_complexity 1 34 0 1 963 563 304 131 33 chr4 49606751 49607057 -106023063 - MER2 DNA MER2_type 0 345 10 1 963 1141 54 0 58 chr4 49607319 49607475 -106022645 - B1_Mm SINE Alu 0 147 1 1 963 496 270 0 0 chr4 49608865 49608976 -106021144 - PB1D10 SINE Alu -1 116 6 1 963 264 234 72 36 chr4 49609134 49609245 -106020875 - L1ME1 LINE L1 0 6179 6065 1 963 24 32 0 0 chr4 49609402 49609433 -106020687 + AT_rich Low_complexity Low_complexity 1 31 0 1 963 324 70 0 0 chr4 49609521 49609564 -106020556 + (T)n Simple_repeat Simple_repeat 1 43 0 1 963 3245 63 2 2 chr4 49611749 49612149 -106017971 + MTB LTR MaLR 1 400 0 1 963 232 263 60 50 chr4 49613274 49613374 -106016746 - L1MEb LINE L1 -5651 419 319 1 963 475 264 48 27 chr4 49613505 49613692 -106016428 + ORR1E LTR MaLR 1 191 -168 1 963 537 204 17 5 chr4 49613920 49614043 -106016077 - B1_Mur1 SINE Alu -1 119 1 1 963 195 129 0 0 chr4 49614192 49614223 -106015897 + (A)n Simple_repeat Simple_repeat 1 31 0 1 963 813 137 12 44 chr4 49614231 49614391 -106015729 - RLTR12A LTR ERVK -413 155 1 1 963 525 281 43 43 chr4 49614574 49614808 -106015312 - L1MC4 LINE L1 -158 7884 7651 1 963 354 227 0 0 chr4 49614953 49615028 -106015092 + RSINE1 SINE B4 13 87 -78 1 963 329 305 56 26 chr4 49615075 49615257 -106014863 - MLT1D LTR MaLR -46 578 270 1 963 354 274 15 38 chr4 49615272 49615405 -106014715 - MLT1D LTR MaLR -283 222 93 1 963 1154 62 0 0 chr4 49615791 49615937 -106014183 + B1_Mus1 SINE Alu 2 147 -1 1 963 243 0 0 0 chr4 49615939 49615966 -106014154 + (A)n Simple_repeat Simple_repeat 1 27 0 1 963 1070 185 94 113 chr4 49616125 49616345 -106013775 - RMER16 LTR ERVK 0 533 333 1 963 1196 55 0 0 chr4 49616345 49616491 -106013629 + B1_Mm SINE Alu 2 147 0 1 963 1070 185 94 113 chr4 49616491 49616641 -106013479 - RMER16 LTR ERVK -201 332 170 1 963 234 258 0 83 chr4 49616616 49616688 -106013432 - RMER16 LTR ERVK -467 66 1 1 963 279 0 0 0 chr4 49616706 49616737 -106013383 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 963 2083 157 61 27 chr4 49617202 49617603 -106012517 + RLTR16 LTR ERVK 1 398 -107 1 963 432 0 0 0 chr4 49617603 49617651 -106012469 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 963 2083 157 61 27 chr4 49617651 49617694 -106012426 + RLTR16 LTR ERVK 399 459 -46 1 963 706 271 196 0 chr4 49617680 49617909 -106012211 - MTC LTR MaLR -133 288 15 1 963 1905 170 65 45 chr4 49618441 49618823 -106011297 + ORR1B1 LTR MaLR 1 390 -4 1 963 2914 296 60 25 chr4 49619576 49620623 -106009497 + Lx8 LINE L1 6336 7419 -54 1 963 909 240 54 5 chr4 49620697 49620902 -106009218 + B3 SINE B2 2 216 0 1 963 666 315 54 4 chr4 49620990 49621229 -106008891 - B4A SINE B4 -25 267 17 1 963 1051 240 149 21 chr4 49621281 49621609 -106008511 + ORR1D2 LTR MaLR 1 370 0 1 963 201 116 47 0 chr4 49622195 49622238 -106007882 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 963 253 319 64 0 chr4 49622560 49622654 -106007466 + MER57-int LTR ERV1 7170 7269 -268 1 963 225 293 145 13 chr4 49622666 49622742 -106007378 + PB1D10 SINE Alu 18 103 -14 1 963 289 0 49 0 chr4 49622759 49622800 -106007320 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 963 213 39 0 0 chr4 49622957 49622983 -106007137 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 963 189 0 0 0 chr4 49622983 49623003 -106007117 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 963 823 248 31 40 chr4 49623010 49623237 -106006883 - MTE2a LTR MaLR -154 225 1 2 963 21 0 0 0 chr4 49624590 49624611 -106005509 + AT_rich Low_complexity Low_complexity 1 21 0 2 963 230 0 33 0 chr4 49625395 49625425 -106004695 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 963 342 0 0 0 chr4 49625434 49625472 -106004648 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 963 21 0 0 0 chr4 49626173 49626194 -106003926 + AT_rich Low_complexity Low_complexity 1 21 0 2 963 351 276 66 40 chr4 49626448 49626599 -106003521 - Tigger2b DNA MER2_type -343 383 229 2 963 234 0 0 0 chr4 49626599 49626625 -106003495 + (T)n Simple_repeat Simple_repeat 1 26 0 2 963 1140 62 14 0 chr4 49626627 49626772 -106003348 - B1_Mus1 SINE Alu 0 148 2 2 963 248 224 0 0 chr4 49627491 49627540 -106002580 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 963 1129 51 0 0 chr4 49627701 49627839 -106002281 + B1_Mm SINE Alu 2 139 -8 2 963 518 261 89 0 chr4 49628587 49628744 -106001376 + MTEa LTR MaLR 1 171 -208 2 963 351 376 0 0 chr4 49628867 49628992 -106001128 - ID_B1 SINE B4 -18 206 82 2 963 306 0 0 0 chr4 49629123 49629157 -106000963 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 963 638 248 151 19 chr4 49629187 49629446 -106000674 + Tigger5 DNA MER2_type 16 308 -2098 2 963 460 256 112 30 chr4 49629470 49629639 -106000481 + Tigger5 DNA MER2_type 2212 2394 -12 2 963 287 317 102 16 chr4 49629758 49630034 -106000086 - MLT1D LTR MaLR -82 423 94 2 963 310 246 208 1 chr4 49630535 49630661 -105999459 - MTE2b LTR MaLR -181 198 63 2 963 432 0 0 0 chr4 49630661 49630709 -105999411 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 963 231 336 81 8 chr4 49630709 49630744 -105999376 - MTE2b LTR MaLR -347 72 36 2 963 3412 157 73 19 chr4 49631099 49631447 -105998673 + RLTR19-int LTR ERVK 2460 2835 -3302 2 963 216 0 0 0 chr4 49631447 49631471 -105998649 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 963 3412 157 73 19 chr4 49631471 49631763 -105998357 + RLTR19-int LTR ERVK 2836 3134 -3003 2 963 1069 0 14 7 chr4 49631786 49631924 -105998196 + B1_Mus1 SINE Alu 10 148 0 2 963 674 223 84 121 chr4 49631941 49632532 -105997588 + RLTR19-int LTR ERVK 2265 2524 -714 2 963 411 190 25 0 chr4 49632532 49632611 -105997509 - LSU-rRNA_Hsa rRNA rRNA -730 4305 4225 2 963 1738 132 128 0 chr4 49632614 49632903 -105997217 + ORR1A3 LTR MaLR 1 326 0 2 963 2485 42 170 0 chr4 49633003 49633315 -105996805 - RLTR10B2 LTR ERVK 0 365 1 2 963 4418 131 13 13 chr4 49633315 49634001 -105996119 - IAPEY3-int LTR ERVK 0 7680 6995 2 963 1652 82 99 0 chr4 49634005 49634237 -105995883 - IAP-d-int LTR ERVK -1287 5255 5001 2 963 527 298 48 48 chr4 49634237 49634632 -105995488 - RLTR10-int LTR ERVK -6015 1566 1172 2 963 2999 38 0 0 chr4 49634657 49634998 -105995122 - RLTR10-int LTR ERVK -995 992 652 2 963 332 106 176 29 chr4 49635001 49635069 -105995051 - RLTR10-int LTR ERVK -6405 137 60 2 963 377 23 0 0 chr4 49635079 49635122 -105994998 - RLTR10-int LTR ERVK -7314 267 225 2 963 251 273 0 0 chr4 49635122 49635177 -105994943 - RLTR27 LTR ERVK -34 275 221 2 963 602 77 0 0 chr4 49635187 49635265 -105994855 - RLTR10-int LTR ERVK -1819 168 91 2 963 1793 283 93 11 chr4 49635331 49636080 -105994040 - Tigger6b DNA MER2_type -786 811 1 2 963 936 226 34 10 chr4 49636198 49636404 -105993716 + B3 SINE B2 1 211 -5 2 963 424 316 8 8 chr4 49636972 49637090 -105993030 - PB1 SINE Alu -9 118 1 2 963 593 81 0 23 chr4 49637344 49637432 -105992688 - B1_Mur4 SINE Alu 0 150 65 2 963 25 75 0 0 chr4 49637466 49637519 -105992601 + AT_rich Low_complexity Low_complexity 1 53 0 2 963 3629 80 147 4 chr4 49637637 49638174 -105991946 + Lx LINE L1 6037 6650 -4 2 963 1553 142 18 14 chr4 49638978 49639257 -105990863 + Lx4A LINE L1 6779 7058 0 2 963 493 110 22 0 chr4 49639507 49639598 -105990522 + (TCC)n Simple_repeat Simple_repeat 2 94 0 2 963 363 297 119 0 chr4 49640214 49640332 -105989788 + B1F SINE Alu 1 132 -17 2 963 329 305 71 64 chr4 49640348 49640488 -105989632 + B1F SINE Alu 1 141 -8 2 963 266 67 22 0 chr4 49640817 49640862 -105989258 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 963 225 0 0 0 chr4 49640862 49640886 -105989234 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 963 3773 169 115 11 chr4 49641582 49642382 -105987738 + RMER19B LTR ERVK 1 885 -17 2 963 1224 54 0 0 chr4 49642382 49642530 -105987590 + B1_Mus1 SINE Alu 1 148 0 2 963 3331 85 147 17 chr4 49642754 49643271 -105986849 + MT2B2 LTR ERVL 1 584 0 2 963 367 279 142 7 chr4 49643605 49643746 -105986374 + RSINE1 SINE B4 4 163 -2 2 963 180 125 0 0 chr4 49643812 49643844 -105986276 + (C)n Simple_repeat Simple_repeat 1 32 0 2 963 24 0 0 0 chr4 49643953 49643977 -105986143 + AT_rich Low_complexity Low_complexity 1 24 0 2 963 1158 62 7 0 chr4 49643977 49644123 -105985997 - B1_Mus1 SINE Alu 0 148 2 2 963 854 172 0 0 chr4 49644309 49644454 -105985666 - B1_Mur4 SINE Alu 0 150 6 2 963 220 360 102 0 chr4 49645565 49645712 -105984408 - MIRb SINE MIR -14 254 93 2 963 189 0 0 0 chr4 49646476 49646497 -105983623 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2 963 306 164 0 0 chr4 49646637 49646692 -105983428 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 963 295 243 0 14 chr4 49647523 49647594 -105982526 + ID4_ SINE ID 2 71 -12 2 963 848 325 156 31 chr4 49647943 49648994 -105981126 - L2 LINE L2 -1721 1698 517 2 963 539 88 132 0 chr4 49649872 49649963 -105980157 + RMER6D LTR ERVK 12 114 -606 2 963 297 0 0 0 chr4 49650139 49650172 -105979948 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 963 779 251 109 56 chr4 49650389 49650655 -105979465 - B4 SINE B4 -12 280 1 2 963 589 239 57 83 chr4 49652251 49652443 -105977677 - B3A SINE B2 -10 188 2 2 963 22 0 0 0 chr4 49652634 49652656 -105977464 + AT_rich Low_complexity Low_complexity 1 22 0 2 963 428 295 31 43 chr4 49652928 49653091 -105977029 + RSINE1 SINE B4 5 165 0 2 963 260 137 122 14 chr4 49656193 49656267 -105973853 - Lx5 LINE L1 -4 7046 6965 2 963 279 311 186 16 chr4 49656323 49656506 -105973614 - MLT1G3 LTR MaLR -309 286 73 2 963 351 253 11 22 chr4 49656750 49656839 -105973281 + RSINE1 SINE B4 78 165 0 2 963 459 0 0 0 chr4 49656853 49656904 -105973216 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 963 687 223 20 98 chr4 49657545 49657749 -105972371 - B3A SINE B2 -8 190 3 2 963 1414 237 205 32 chr4 49657773 49658199 -105971921 - Lx8 LINE L1 0 7473 6971 2 963 398 20 20 0 chr4 49658199 49658250 -105971870 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 963 1414 237 205 32 chr4 49658250 49658360 -105971760 - Lx8 LINE L1 -503 6970 6844 2 963 447 276 250 27 chr4 49658948 49659280 -105970840 + L1MA7 LINE L1 3909 4314 -1829 2 963 666 216 93 1 chr4 49659329 49659545 -105970575 + L1MA7 LINE L1 5748 5980 -317 2 963 2343 132 58 2 chr4 49659550 49659982 -105970138 - RLTR28 LTR ERVL -28 496 41 2 963 262 286 23 23 chr4 49660040 49660126 -105969994 - RLTR19-int LTR ERVK -1813 4324 4239 2 963 257 254 9 0 chr4 49662998 49663112 -105967008 + GA-rich Low_complexity Low_complexity 2 116 0 2 963 802 234 9 91 chr4 49664731 49664961 -105965159 - B3 SINE B2 -4 212 2 2 963 559 215 43 36 chr4 49664975 49665115 -105965005 - B1_Mus2 SINE Alu 0 147 7 2 963 1297 76 12 0 chr4 49666330 49666501 -105963619 + B2_Mm1t SINE B2 3 175 -18 2 963 1306 90 15 55 chr4 49667853 49668053 -105962067 - B2_Mm1a SINE B2 -1 192 1 2 963 189 0 0 0 chr4 49668641 49668662 -105961458 + (T)n Simple_repeat Simple_repeat 1 21 0 2 963 250 284 152 40 chr4 49669803 49669902 -105960218 - PB1D10 SINE Alu -5 112 3 2 963 231 36 0 0 chr4 49669981 49670009 -105960111 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 963 1155 224 112 40 chr4 49671555 49671681 -105958439 + ORR1D1 LTR MaLR 1 127 -247 2 963 198 0 0 0 chr4 49671681 49671703 -105958417 + (GGA)n Simple_repeat Simple_repeat 1 22 0 2 963 1155 224 112 40 chr4 49671703 49671925 -105958195 + ORR1D1 LTR MaLR 128 373 -1 2 963 534 278 95 74 chr4 49672978 49673262 -105956858 - B4 SINE B4 0 292 3 2 963 292 118 83 56 chr4 49673886 49673958 -105956162 + MIRc SINE MIR 69 142 -126 2 963 193 225 99 0 chr4 49674511 49674582 -105955538 - MIR3 SINE MIR -9 199 122 2 963 195 69 0 0 chr4 49675615 49675644 -105954476 + (T)n Simple_repeat Simple_repeat 1 29 0 2 964 273 205 12 25 chr4 49678718 49678798 -105951322 + GA-rich Low_complexity Low_complexity 2 80 0 2 964 482 338 45 0 chr4 49678902 49679059 -105951061 - B4A SINE B4 -122 170 7 2 964 378 0 0 0 chr4 49679195 49679237 -105950883 + (TTGG)n Simple_repeat Simple_repeat 1 42 0 2 964 483 285 0 16 chr4 49679959 49680084 -105950036 - B1F SINE Alu -9 140 18 2 964 261 305 135 48 chr4 49680123 49680420 -105949700 + MLT1H2 LTR MaLR 183 488 -1 2 964 368 274 151 10 chr4 49682455 49682654 -105947466 - MIR SINE MIR -8 254 28 2 964 5216 164 56 3 chr4 49683708 49684843 -105945277 + Lx4B LINE L1 5780 7000 0 2 964 24 0 0 0 chr4 49686133 49686157 -105943963 + AT_rich Low_complexity Low_complexity 1 24 0 2 964 911 214 54 15 chr4 49686467 49686671 -105943449 - B3 SINE B2 0 216 5 2 964 973 203 277 19 chr4 49687174 49687495 -105942625 + MTD LTR MaLR 2 405 -14 2 964 183 304 0 0 chr4 49688217 49688273 -105941847 + L2 LINE L2 1911 1966 -1453 2 964 194 308 0 0 chr4 49688407 49688459 -105941661 + L2 LINE L2 2291 2342 -1077 2 964 645 242 189 0 chr4 49688554 49688783 -105941337 + Lx8 LINE L1 6206 6478 -995 2 964 1053 277 208 2 chr4 49688781 49689235 -105940885 + Lx8 LINE L1 6668 7214 -259 2 964 649 211 42 7 chr4 49689258 49689401 -105940719 - B1F SINE Alu 0 149 2 2 964 212 133 44 0 chr4 49689454 49689499 -105940621 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 964 180 0 0 0 chr4 49690130 49690150 -105939970 + (T)n Simple_repeat Simple_repeat 1 20 0 2 964 788 342 4 12 chr4 49691029 49691269 -105938851 + B4 SINE B4 52 289 -3 2 964 545 209 11 17 chr4 49691274 49691449 -105938671 + (CATA)n Simple_repeat Simple_repeat 1 174 0 3 964 1015 252 66 63 chr4 49695973 49696337 -105933783 + ORR1D2 LTR MaLR 1 365 -5 3 964 560 295 11 5 chr4 49696368 49696552 -105933568 - B3A SINE B2 -9 189 5 3 964 252 318 24 0 chr4 49696744 49696829 -105933291 + PB1D10 SINE Alu 24 110 -7 3 964 22 35 0 0 chr4 49697078 49697107 -105933013 + AT_rich Low_complexity Low_complexity 1 29 0 3 964 597 186 0 0 chr4 49697865 49697989 -105932131 + CT-rich Low_complexity Low_complexity 2 125 0 3 964 4995 154 73 10 chr4 49698204 49699216 -105930904 + RMER12 LTR ERVK 1 1076 -246 3 964 873 54 0 0 chr4 49700478 49700589 -105929531 + (TTC)n Simple_repeat Simple_repeat 2 112 0 3 964 341 265 61 85 chr4 49701133 49701298 -105928822 - MLT1C LTR MaLR -190 200 40 3 964 361 259 8 65 chr4 49702647 49702771 -105927349 - PB1D10 SINE Alu 0 117 1 3 964 568 256 24 0 chr4 49702955 49703080 -105927040 - RSINE1 SINE B4 0 165 38 3 964 384 287 133 108 chr4 49703085 49703322 -105926798 + RMER10A LTR ERVL 18 284 -158 3 964 892 106 0 27 chr4 49703322 49703507 -105926613 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 964 384 287 133 108 chr4 49703507 49703659 -105926461 + RMER10A LTR ERVL 285 417 -25 3 964 36 0 0 0 chr4 49704121 49704157 -105925963 + AT_rich Low_complexity Low_complexity 1 36 0 3 964 539 29 14 0 chr4 49704291 49704360 -105925760 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 964 1000 294 88 3 chr4 49705021 49705352 -105924768 - ORR1E LTR MaLR 0 359 1 3 964 299 33 16 62 chr4 49705427 49705491 -105924629 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 3 964 261 0 0 0 chr4 49705653 49705682 -105924438 + (T)n Simple_repeat Simple_repeat 1 29 0 3 964 305 270 33 11 chr4 49706889 49706979 -105923141 + LTR33 LTR ERVL 23 114 -401 3 964 1480 119 14 0 chr4 49708790 49709008 -105921112 - URR1B DNA MER1_type 0 225 5 3 964 430 338 7 7 chr4 49709329 49709466 -105920654 + RSINE1 SINE B4 4 140 -25 3 964 3798 164 32 14 chr4 49709467 49710237 -105919883 + RMER13B LTR ERVK 1 908 0 3 964 378 0 0 0 chr4 49710271 49710313 -105919807 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 964 1146 199 24 0 chr4 49710566 49710777 -105919343 - B3 SINE B2 0 216 1 3 964 385 290 110 12 chr4 49710833 49710997 -105919123 - MIR SINE MIR -79 183 4 3 964 180 111 0 0 chr4 49711079 49711106 -105919014 + (ATG)n Simple_repeat Simple_repeat 3 29 0 3 964 255 346 78 73 chr4 49711182 49711388 -105918732 + MLT1L LTR MaLR 1 207 -403 3 964 373 327 0 0 chr4 49712246 49712350 -105917770 - PB1D10 SINE Alu -13 104 1 3 964 543 90 0 0 chr4 49712723 49712801 -105917319 + (CAAT)n Simple_repeat Simple_repeat 2 79 0 3 964 345 280 101 0 chr4 49712887 49713074 -105917046 - MLT1B LTR MaLR -206 261 52 3 964 183 80 0 0 chr4 49713242 49713267 -105916853 + (CACCAT)n Simple_repeat Simple_repeat 5 29 0 3 964 333 68 0 0 chr4 49713274 49713318 -105916802 + (CAA)n Simple_repeat Simple_repeat 1 44 0 3 964 1776 217 22 3 chr4 49713327 49713688 -105916432 - Lx7 LINE L1 -264 7432 7065 3 964 315 0 0 0 chr4 49714023 49714058 -105916062 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 964 322 239 0 29 chr4 49714067 49714136 -105915984 - ID4_ SINE ID -16 67 1 3 964 269 354 100 23 chr4 49714424 49714774 -105915346 - L2 LINE L2 -647 2772 2396 3 964 201 184 0 20 chr4 49715531 49715581 -105914539 + (CAT)n Simple_repeat Simple_repeat 1 49 0 3 964 210 37 0 0 chr4 49715945 49715972 -105914148 + (T)n Simple_repeat Simple_repeat 1 27 0 3 964 4232 49 6 15 chr4 49715985 49716519 -105913601 + L1_Mus1 LINE L1 6039 6567 0 3 964 451 216 8 75 chr4 49716611 49716731 -105913389 + MTEa LTR MaLR 1 112 -267 3 964 315 339 106 31 chr4 49717142 49717653 -105912467 + L1ME3B LINE L1 5545 6093 -147 3 964 189 0 0 0 chr4 49718381 49718402 -105911718 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 964 724 239 19 13 chr4 49718410 49718567 -105911553 - B3 SINE B2 -30 186 29 3 964 228 284 135 18 chr4 49719234 49719345 -105910775 - MIRb SINE MIR -130 138 15 3 964 579 285 19 68 chr4 49719440 49719647 -105910473 + B3A SINE B2 1 197 -1 3 964 207 0 0 0 chr4 49721092 49721115 -105909005 + (T)n Simple_repeat Simple_repeat 1 23 0 3 964 236 370 116 10 chr4 49721377 49721576 -105908544 - MIR SINE MIR -30 232 13 3 964 1452 158 12 4 chr4 49722032 49722287 -105907833 + Lx5 LINE L1 6786 7042 -8 3 964 950 291 70 12 chr4 49722409 49722736 -105907384 - MLT1A0 LTR MaLR -2 363 18 3 964 23 33 0 0 chr4 49723113 49723143 -105906977 + AT_rich Low_complexity Low_complexity 1 30 0 3 964 342 321 43 21 chr4 49723219 49723359 -105906761 + ID_B1 SINE B4 80 222 -2 3 964 276 193 8 63 chr4 49723359 49723486 -105906634 + (CAAA)n Simple_repeat Simple_repeat 1 120 0 3 964 242 348 21 52 chr4 49723514 49723531 -105906589 - ID_B1 SINE B4 -129 95 2 3 964 247 388 12 0 chr4 49723531 49723611 -105906509 - ID4 SINE ID -1 82 2 3 964 22 0 0 0 chr4 49723867 49723889 -105906231 + AT_rich Low_complexity Low_complexity 1 22 0 3 964 3933 78 4 8 chr4 49723894 49724427 -105905693 - L1Md_F2 LINE L1 -14 6568 6038 3 964 818 224 301 20 chr4 49724697 49724993 -105905127 - MTE2b LTR MaLR 0 379 1 3 964 265 314 43 0 chr4 49726601 49726671 -105903449 + ID2 SINE ID 1 73 -10 3 964 213 39 0 0 chr4 49726671 49726697 -105903423 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 3 964 218 315 0 14 chr4 49727517 49727591 -105902529 - MIRb SINE MIR -129 139 67 3 964 222 191 0 0 chr4 49728259 49728306 -105901814 + CT-rich Low_complexity Low_complexity 4 50 0 3 964 3827 58 95 4 chr4 49728341 49728858 -105901262 - L1Md_F2 LINE L1 -12 6570 6007 3 964 883 85 2 0 chr4 49730138 49730270 -105899850 - B1_Mus2 SINE Alu 0 147 16 3 964 315 0 0 0 chr4 49731673 49731708 -105898412 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 964 1077 298 34 11 chr4 49731728 49731996 -105898124 - B4A SINE B4 -18 274 1 3 964 609 307 22 0 chr4 49732646 49732783 -105897337 - RSINE1 SINE B4 -24 141 2 3 964 381 396 11 58 chr4 49734106 49734366 -105895754 - MIRb SINE MIR -18 250 3 3 964 770 300 57 12 chr4 49734456 49734702 -105895418 - B4A SINE B4 -2 290 34 3 964 328 385 12 0 chr4 49735024 49735185 -105894935 - MIR SINE MIR -61 201 39 3 964 424 325 23 82 chr4 49735874 49736045 -105894075 + RSINE1 SINE B4 4 164 -1 3 964 404 243 8 112 chr4 49738927 49739052 -105891068 + MER58A DNA MER1_type 5 116 -108 3 964 234 293 37 0 chr4 49739159 49739241 -105890879 - MER94 DNA AcHobo -49 85 1 3 964 725 278 15 54 chr4 49739573 49739778 -105890342 + MER58A DNA MER1_type 1 197 -27 3 964 808 126 0 36 chr4 49740403 49740543 -105889577 - L1Md_F2 LINE L1 -11 6571 6437 3 964 2929 36 0 3 chr4 49740543 49740906 -105889214 + L1Md_F2 LINE L1 6021 6382 -200 3 964 359 302 50 7 chr4 49740954 49741094 -105889026 - MIR SINE MIR -105 157 12 3 964 1004 204 50 21 chr4 49742685 49742965 -105887155 + L1M2 LINE L1 4781 5068 -1075 3 964 692 200 54 27 chr4 49743002 49743151 -105886969 - B3 SINE B2 0 216 64 3 964 329 192 165 13 chr4 49743150 49743229 -105886891 - RLTR16 LTR ERVK -414 91 1 3 964 1654 234 68 67 chr4 49743230 49743830 -105886290 + Lx9 LINE L1 6911 7519 -125 3 964 183 129 0 0 chr4 49743830 49743861 -105886259 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 964 1654 234 68 67 chr4 49743861 49743993 -105886127 + Lx9 LINE L1 7520 7644 0 3 964 690 185 89 13 chr4 49744015 49744317 -105885803 + L1M2 LINE L1 5117 5443 -740 3 964 36766 9 0 1 chr4 49744328 49750330 -105879790 + L1Md_A LINE L1 1 5586 -297 3 964 9071 2 0 0 chr4 49750330 49751326 -105878794 + L1Md_A LINE L1 5587 6582 0 3 964 643 262 65 4 chr4 49751349 49751579 -105878541 + L1M2 LINE L1 5428 5671 -629 3 964 201 74 0 0 chr4 49751739 49751766 -105878354 + (T)n Simple_repeat Simple_repeat 1 27 0 3 964 656 276 0 0 chr4 49751766 49751893 -105878227 - B1_Mur1 SINE Alu -21 128 2 3 964 251 322 41 41 chr4 49752087 49752210 -105877910 - B4A SINE B4 -116 176 54 3 964 767 46 9 0 chr4 49752996 49753104 -105877016 + (TCTCTG)n Simple_repeat Simple_repeat 1 109 0 3 964 1008 86 0 0 chr4 49753105 49753245 -105876875 + (TCTCC)n Simple_repeat Simple_repeat 2 141 0 3 964 223 104 42 0 chr4 49753249 49753297 -105876823 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 3 964 187 381 0 30 chr4 49753372 49753472 -105876648 - MIRb SINE MIR -73 195 99 3 964 255 221 43 29 chr4 49755072 49755142 -105874978 + ID4_ SINE ID 1 71 -12 3 964 596 73 0 68 chr4 49755151 49755268 -105874852 + L1Md_F2 LINE L1 6472 6580 -2 3 964 1288 266 110 29 chr4 49755389 49756246 -105873874 + L1MA9 LINE L1 4637 5567 -724 3 964 279 0 0 0 chr4 49756518 49756549 -105873571 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 964 598 291 130 53 chr4 49756588 49757002 -105873118 + L1MA9 LINE L1 5817 6262 -50 3 964 195 114 0 0 chr4 49757101 49757136 -105872984 + (T)n Simple_repeat Simple_repeat 1 35 0 3 964 372 133 0 0 chr4 49757920 49757980 -105872140 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 964 230 231 19 19 chr4 49758074 49758127 -105871993 - tRNA-Gly-GGA tRNA tRNA -20 55 3 3 964 492 241 17 0 chr4 49758309 49758483 -105871637 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 964 799 73 16 0 chr4 49758494 49758617 -105871503 + Lx3B LINE L1 6111 6235 -738 3 964 3950 132 35 2 chr4 49758620 49759242 -105870878 + Lx3B LINE L1 6327 6969 -4 3 964 30 0 0 0 chr4 49759251 49759281 -105870839 + AT_rich Low_complexity Low_complexity 1 30 0 3 964 194 0 39 0 chr4 49759506 49759532 -105870588 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 964 1164 50 0 7 chr4 49759861 49760003 -105870117 - B1_Mm SINE Alu -5 142 2 4 964 22 56 0 0 chr4 49760407 49760443 -105869677 + AT_rich Low_complexity Low_complexity 1 36 0 4 964 501 253 0 0 chr4 49760489 49760651 -105869469 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 964 643 214 49 60 chr4 49760651 49760835 -105869285 - B3A SINE B2 -16 182 1 4 964 418 293 0 17 chr4 49762987 49763105 -105867015 - PB1D10 SINE Alu -1 116 1 4 964 594 300 28 57 chr4 49763322 49763569 -105866551 + Lx8 LINE L1 7233 7472 -1 4 964 202 305 73 37 chr4 49764485 49764594 -105865526 + MIRm SINE MIR 25 137 -139 4 964 216 0 0 0 chr4 49764749 49764773 -105865347 + (A)n Simple_repeat Simple_repeat 1 24 0 4 964 189 0 0 0 chr4 49765088 49765109 -105865011 + (T)n Simple_repeat Simple_repeat 1 21 0 4 964 3109 83 9 2 chr4 49765546 49765970 -105864150 - L1_Mus3 LINE L1 -8 6630 6204 4 964 2674 83 39 0 chr4 49765970 49766355 -105863765 + L1_Mus3 LINE L1 5801 6200 -438 4 964 389 268 35 18 chr4 49766411 49766525 -105863595 - MER5A1 DNA MER1_type -50 116 1 4 964 1051 275 136 19 chr4 49767838 49768205 -105861915 + MTC LTR MaLR 12 421 0 4 964 562 227 67 6 chr4 49768740 49768880 -105861240 - B1F2 SINE Alu 0 149 2 4 964 581 288 91 12 chr4 49769049 49769292 -105860828 + MamRep434 DNA TcMar 99 360 -66 4 964 544 302 130 8 chr4 49770089 49770466 -105859654 - L1ME4a LINE L1 -126 5998 5576 4 964 441 0 0 0 chr4 49770924 49770973 -105859147 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 964 252 0 0 0 chr4 49770973 49771000 -105859120 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 964 1249 209 56 23 chr4 49771107 49771411 -105858709 + ORR1C2-int LTR MaLR 1087 1400 -109 4 964 1538 138 127 0 chr4 49771407 49771690 -105858430 + ORR1C2 LTR MaLR 66 384 0 4 964 216 233 0 0 chr4 49771889 49771962 -105858158 + (TTA)n Simple_repeat Simple_repeat 2 74 0 4 964 490 288 41 80 chr4 49772088 49772386 -105857734 - MTEa LTR MaLR 0 379 86 4 964 315 104 0 0 chr4 49772442 49772490 -105857630 + (TCTCCC)n Simple_repeat Simple_repeat 2 49 0 4 964 180 0 0 0 chr4 49772773 49772793 -105857327 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 964 586 45 34 0 chr4 49774163 49774252 -105855868 + L1Md_F3 LINE L1 6492 6583 -1 4 964 730 314 48 4 chr4 49774494 49774721 -105855399 + B4A SINE B4 39 275 -17 4 964 615 39 0 0 chr4 49774769 49774847 -105855273 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 964 204 97 0 0 chr4 49774847 49774878 -105855242 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 964 543 69 0 0 chr4 49774924 49774996 -105855124 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 964 824 268 26 14 chr4 49775047 49775391 -105854729 - L1_Mur3 LINE L1 -359 5521 5174 4 964 848 299 94 45 chr4 49775392 49775995 -105854125 + Lx8 LINE L1 5704 6336 -1137 4 964 10234 121 45 64 chr4 49775997 49776977 -105853143 + Lx4B LINE L1 1063 2055 -3822 4 964 198 0 0 0 chr4 49776977 49776999 -105853121 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 964 10234 126 63 87 chr4 49776999 49777979 -105852141 + Lx4B LINE L1 2056 3086 -2791 4 964 941 79 29 7 chr4 49777979 49778119 -105852001 + B1_Mus1 SINE Alu 6 148 0 4 964 10234 126 63 87 chr4 49778119 49778498 -105851622 + Lx4B LINE L1 3087 3486 -2391 4 964 10085 129 17 7 chr4 49778494 49780448 -105849672 + Lx4B LINE L1 4292 6268 -790 4 964 2579 91 68 16 chr4 49780468 49780848 -105849272 - MTB LTR MaLR 0 400 1 4 964 3079 146 24 35 chr4 49780848 49781424 -105848696 + Lx4B LINE L1 6481 7050 -8 4 964 623 285 130 62 chr4 49781869 49782224 -105847896 - MTEa LTR MaLR 0 379 1 4 964 524 303 134 56 chr4 49782909 49783178 -105846942 - B4 SINE B4 0 292 3 4 964 833 184 193 41 chr4 49784456 49784700 -105845420 - Lx9 LINE L1 -1 7643 7363 4 964 296 281 54 62 chr4 49785479 49785608 -105844512 + MIRb SINE MIR 26 153 -115 4 964 459 0 0 0 chr4 49786664 49786715 -105843405 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 964 199 256 90 0 chr4 49787135 49787213 -105842907 - L2c LINE L2 -87 3300 3216 4 964 21 0 0 0 chr4 49788129 49788150 -105841970 + AT_rich Low_complexity Low_complexity 1 21 0 4 964 540 304 340 17 chr4 49788916 49789719 -105840401 - L2c LINE L2 -362 3057 1996 4 964 239 374 32 16 chr4 49789965 49790090 -105840030 - L2c LINE L2 -1645 1774 1648 4 964 830 249 41 0 chr4 49790223 49790420 -105839700 + B3 SINE B2 3 207 -9 4 964 1204 61 0 0 chr4 49790507 49790654 -105839466 - B1_Mus2 SINE Alu 0 147 1 4 964 22 56 0 0 chr4 49790840 49790876 -105839244 + AT_rich Low_complexity Low_complexity 1 36 0 4 964 713 174 58 0 chr4 49790913 49791034 -105839086 - B3 SINE B2 -86 130 3 4 964 2479 269 15 17 chr4 49791533 49792191 -105837929 + Lx8 LINE L1 6191 6847 -626 4 964 25 83 0 0 chr4 49793775 49793835 -105836285 + AT_rich Low_complexity Low_complexity 1 60 0 4 964 326 309 66 7 chr4 49793843 49793980 -105836140 + B1F SINE Alu 2 146 -3 4 964 810 31 0 0 chr4 49793980 49794077 -105836043 + (TTTCC)n Simple_repeat Simple_repeat 5 101 0 4 964 1633 43 0 19 chr4 49794086 49794298 -105835822 - L1_Mus2 LINE L1 -2 6564 6357 4 964 285 248 24 55 chr4 49794298 49794414 -105835706 + ID4_ SINE ID 17 128 -24 4 964 23 0 0 0 chr4 49794942 49794965 -105835155 + AT_rich Low_complexity Low_complexity 1 23 0 4 964 1894 220 62 47 chr4 49794969 49795007 -105835113 - Lx7 LINE L1 -1235 6461 6406 4 964 441 0 0 0 chr4 49795007 49795056 -105835064 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 964 1894 220 62 47 chr4 49795056 49795552 -105834568 - Lx7 LINE L1 -1291 6405 5919 4 964 450 0 0 0 chr4 49795732 49795782 -105834338 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 964 196 349 59 31 chr4 49795878 49796100 -105834020 - L3 LINE CR1 -1650 2839 2612 4 964 819 175 0 0 chr4 49796480 49796634 -105833486 + CT-rich Low_complexity Low_complexity 4 157 0 4 964 647 276 60 6 chr4 49796645 49796811 -105833309 - ID_B1 SINE B4 -46 246 63 4 964 418 311 0 36 chr4 49800403 49800540 -105829580 + ID_B1 SINE B4 79 210 -14 4 964 416 255 20 0 chr4 49800827 49800929 -105829191 + PB1D10 SINE Alu 3 106 -11 4 964 2420 164 103 19 chr4 49800945 49801430 -105828690 + RLTR11A LTR ERVK 1 526 -2 4 964 276 277 43 0 chr4 49802843 49802937 -105827183 + (TATG)n Simple_repeat Simple_repeat 1 98 0 4 964 478 304 6 36 chr4 49802945 49803112 -105827008 - RSINE1 SINE B4 0 165 4 4 964 499 254 0 0 chr4 49803634 49803744 -105826376 - PB1D9 SINE Alu -6 114 5 4 964 1194 80 33 22 chr4 49804277 49804545 -105825575 + (TCTA)n Simple_repeat Simple_repeat 1 270 0 4 964 300 322 57 16 chr4 49804665 49804788 -105825332 - MIR SINE MIR -133 129 2 4 120 1208 66 24 12 chr4 49807237 49807406 -105822714 - B2_Mm2 SINE B2 -24 171 1 4 965 632 337 56 42 chr4 49807423 49807782 -105822338 + RMER5 LTR ERV1 143 506 -28 4 965 201 250 14 14 chr4 49807812 49807885 -105822235 + (TTTG)n Simple_repeat Simple_repeat 2 74 0 4 965 270 81 0 0 chr4 49808633 49808670 -105821450 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 965 420 111 0 0 chr4 49808671 49808734 -105821386 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 965 21 0 0 0 chr4 49809035 49809056 -105821064 + AT_rich Low_complexity Low_complexity 1 21 0 4 965 846 160 0 20 chr4 49809083 49809230 -105820890 + B1_Mus1 SINE Alu 2 145 -3 4 965 495 48 0 0 chr4 49809231 49809293 -105820827 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 4 965 463 89 0 81 chr4 49809476 49809562 -105820558 + L1_Mus1 LINE L1 6488 6566 -1 4 965 218 342 114 19 chr4 49810144 49810302 -105819818 + MIRb SINE MIR 34 206 -62 4 965 1032 210 247 6 chr4 49810584 49810896 -105819224 - Lx6 LINE L1 -639 6821 6435 4 965 2074 182 43 28 chr4 49810896 49811255 -105818865 - L1_Mur3 LINE L1 -1090 4790 4421 4 965 3183 131 18 2 chr4 49811255 49811753 -105818367 - Lx3A LINE L1 -3 6978 6473 4 965 2074 182 43 28 chr4 49811753 49811863 -105818257 - L1_Mur3 LINE L1 -1460 4420 4314 4 965 847 239 15 15 chr4 49812341 49812541 -105817579 - B3 SINE B2 -15 201 2 4 965 920 35 0 8 chr4 49813977 49814094 -105816026 + (GGGAGA)n Simple_repeat Simple_repeat 5 120 0 4 965 606 323 87 19 chr4 49815319 49815584 -105814536 + B4A SINE B4 2 284 -8 4 965 327 195 26 0 chr4 49815590 49815703 -105814417 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 965 657 69 0 0 chr4 49815704 49815791 -105814329 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 965 777 22 0 0 chr4 49816999 49817090 -105813030 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 965 585 0 0 0 chr4 49819355 49819420 -105810700 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 965 1170 250 50 31 chr4 49820344 49820666 -105809454 - MER2 DNA MER2_type -17 328 1 4 965 26 64 0 0 chr4 49821158 49821205 -105808915 + AT_rich Low_complexity Low_complexity 1 47 0 4 965 3699 14 0 0 chr4 49821441 49821862 -105808258 + L1Md_A LINE L1 5166 5586 -297 4 965 8716 19 0 0 chr4 49821862 49822857 -105807263 + L1Md_A LINE L1 5587 6581 -1 4 965 301 293 13 59 chr4 49824113 49824259 -105805861 + MLT1A1 LTR MaLR 237 408 0 4 965 4009 169 28 40 chr4 49825304 49826118 -105804002 + Lx3C LINE L1 6154 6957 -19 4 965 408 206 18 83 chr4 49826193 49826398 -105803722 + Lx3C LINE L1 6791 6997 -3 4 965 2115 4 0 0 chr4 49826415 49826652 -105803468 - L1Md_A LINE L1 0 6582 6346 4 965 300 342 88 22 chr4 49826713 49826940 -105803180 - MIR SINE MIR -1 261 20 4 965 230 284 50 99 chr4 49827124 49827245 -105802875 + L1M6 LINE L1 504 618 -5878 4 965 457 285 78 71 chr4 49828355 49828623 -105801497 + L1M6 LINE L1 1568 1837 -4659 4 965 198 71 0 0 chr4 49828734 49828762 -105801358 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4 965 204 40 0 0 chr4 49829150 49829175 -105800945 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4 965 25 51 0 0 chr4 49829340 49829379 -105800741 + AT_rich Low_complexity Low_complexity 1 39 0 4 965 766 223 72 5 chr4 49829383 49829577 -105800543 - B3 SINE B2 -5 211 5 4 965 565 316 83 50 chr4 49829603 49829880 -105800240 - B4A SINE B4 -5 287 2 4 965 471 63 0 0 chr4 49829914 49829977 -105800143 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 965 210 158 0 0 chr4 49830338 49830376 -105799744 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 965 295 204 0 0 chr4 49830939 49830993 -105799127 - Lx8 LINE L1 -378 7095 7042 5 965 4022 55 4 4 chr4 49831033 49831544 -105798576 + L1Md_F2 LINE L1 6070 6580 -2 5 965 23 0 0 0 chr4 49831607 49831630 -105798490 + AT_rich Low_complexity Low_complexity 1 23 0 5 965 21457 83 28 2 chr4 49831632 49835357 -105794763 + L1_Mur1 LINE L1 220 4344 -1542 5 965 3642 74 10 0 chr4 49835352 49835864 -105794256 - L1_Mur1 LINE L1 -797 5089 4573 5 965 6154 84 7 2 chr4 49835864 49836702 -105793418 + Lx3_Mus LINE L1 6160 7001 -8 5 965 6955 236 45 16 chr4 49836791 49838581 -105791539 + Lx6 LINE L1 5613 7454 -6 5 965 227 340 118 64 chr4 49838589 49838793 -105791327 + MER102b DNA MER1_type 127 341 0 5 965 233 182 0 113 chr4 49838807 49838869 -105791251 - MER5A1 DNA MER1_type -6 160 106 5 965 972 255 163 19 chr4 49840104 49840332 -105789788 + MER113 DNA MER1_type 34 298 -223 5 965 189 0 0 0 chr4 49840332 49840353 -105789767 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 965 972 255 163 19 chr4 49840353 49840548 -105789572 + MER113 DNA MER1_type 299 518 -3 5 965 627 144 0 0 chr4 49841199 49841310 -105788810 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 5 965 297 0 0 0 chr4 49841312 49841345 -105788775 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 965 462 292 63 106 chr4 49841400 49841640 -105788480 + B4A SINE B4 48 278 -14 5 965 442 119 12 12 chr4 49841673 49841758 -105788362 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 965 351 0 0 0 chr4 49841758 49841797 -105788323 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 965 229 301 134 82 chr4 49843013 49843342 -105786778 + L2a LINE L2 3001 3346 -80 5 965 2005 94 55 61 chr4 49843522 49843850 -105786270 + ORR1A3 LTR MaLR 1 326 0 5 965 261 0 0 0 chr4 49844605 49844634 -105785486 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 965 518 238 130 22 chr4 49845477 49845632 -105784488 + B3 SINE B2 5 179 -37 5 965 444 118 0 0 chr4 49845632 49845700 -105784420 + (CATA)n Simple_repeat Simple_repeat 1 68 0 5 965 518 238 130 22 chr4 49845700 49845729 -105784391 + B3 SINE B2 180 208 -8 5 965 1465 175 162 6 chr4 49846172 49846505 -105783615 + Lx5 LINE L1 6666 7050 0 5 965 224 216 39 0 chr4 49846601 49846652 -105783468 + B4A SINE B4 20 72 -220 5 965 692 344 62 55 chr4 49846966 49847187 -105782933 - MLT1D LTR MaLR -1 504 278 5 965 3436 25 5 0 chr4 49847187 49847581 -105782539 + MTA_Mm LTR MaLR 1 396 0 5 965 692 315 41 48 chr4 49847581 49847823 -105782297 - MLT1D LTR MaLR -228 277 2 5 965 270 91 55 0 chr4 49848006 49848061 -105782059 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 965 547 197 0 23 chr4 49848666 49848796 -105781324 + HAL1-2a_MD LINE L1 2355 2481 -543 5 965 305 266 125 0 chr4 49848998 49849062 -105781058 - PB1D7 SINE Alu -46 74 3 5 965 228 35 0 0 chr4 49849307 49849336 -105780784 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 965 1539 214 195 10 chr4 49849438 49849950 -105780170 - Lx9 LINE L1 -1 7643 7037 5 965 195 42 0 0 chr4 49850038 49850062 -105780058 + (TATG)n Simple_repeat Simple_repeat 4 27 0 5 965 200 34 0 33 chr4 49851155 49851185 -105778935 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 5 965 456 62 0 0 chr4 49851190 49851254 -105778866 + (CAA)n Simple_repeat Simple_repeat 2 65 0 5 965 242 179 18 0 chr4 49852018 49852074 -105778046 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 965 324 274 36 0 chr4 49852093 49852177 -105777943 - PB1D10 SINE Alu -21 96 10 5 965 988 107 0 0 chr4 49852927 49853067 -105777053 - URR1B DNA MER1_type 0 225 86 5 965 467 223 64 51 chr4 49853067 49853078 -105777042 + CYRA11_Mm Unknown Y-chromosome 172 324 -293 5 965 249 340 62 21 chr4 49853420 49853516 -105776604 + B4A SINE B4 1 100 -192 5 965 22 35 0 0 chr4 49853610 49853639 -105776481 + AT_rich Low_complexity Low_complexity 1 29 0 5 965 33 43 0 0 chr4 49854317 49854364 -105775756 + AT_rich Low_complexity Low_complexity 1 47 0 5 965 1089 197 5 0 chr4 49854392 49854580 -105775540 - B3 SINE B2 -26 190 2 5 965 398 333 20 33 chr4 49859096 49859248 -105770872 + RSINE1 SINE B4 10 159 -6 5 965 447 78 0 0 chr4 49860424 49860488 -105769632 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 965 718 245 44 51 chr4 49860508 49860783 -105769337 - B4A SINE B4 -19 273 1 5 965 238 328 82 10 chr4 49861157 49861351 -105768769 - L2a LINE L2 -187 3239 3032 5 965 465 115 0 22 chr4 49861366 49861455 -105768665 - L1Md_F2 LINE L1 -3 6579 6493 5 965 473 162 16 105 chr4 49861686 49861810 -105768310 - PB1D10 SINE Alu 0 117 5 5 965 180 0 0 0 chr4 49862678 49862698 -105767422 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 965 189 349 57 28 chr4 49862710 49862887 -105767233 - L2a LINE L2 -392 3027 2846 5 965 1752 157 74 58 chr4 49866417 49866795 -105763325 + ORR1C2 LTR MaLR 1 384 0 5 965 1455 256 78 70 chr4 49866956 49867444 -105762676 - RMER15 LTR ERVL -55 520 29 5 965 327 231 0 30 chr4 49867493 49867560 -105762560 - RMER15 LTR ERVL -510 65 1 5 965 30 0 0 0 chr4 49867730 49867760 -105762360 + AT_rich Low_complexity Low_complexity 1 30 0 5 965 300 188 0 0 chr4 49867814 49867878 -105762242 + GA-rich Low_complexity Low_complexity 2 65 0 5 965 556 280 32 0 chr4 49868614 49868739 -105761381 + B1F SINE Alu 1 129 -20 5 965 211 234 0 0 chr4 49868741 49868788 -105761332 + A-rich Low_complexity Low_complexity 1 47 0 5 965 843 277 82 51 chr4 49869797 49870211 -105759909 + Lx8 LINE L1 7045 7471 -2 5 965 350 333 131 81 chr4 49870220 49870712 -105759408 - MLT1E1A LTR MaLR -42 638 14 5 965 2578 217 31 20 chr4 49870712 49871301 -105758819 + Lx7 LINE L1 6769 7363 -333 5 965 249 291 36 22 chr4 49871384 49871521 -105758599 + Lx7 LINE L1 7541 7679 -17 5 965 3326 100 6 2 chr4 49871526 49871996 -105758124 + L1_Mus3 LINE L1 6161 6632 -6 5 965 1416 264 41 22 chr4 49872734 49873443 -105756677 - Lx6 LINE L1 -156 7304 6454 5 965 473 277 38 55 chr4 49873443 49873626 -105756494 - MTE-int LTR MaLR -165 1415 1236 5 965 801 279 5 0 chr4 49874218 49874433 -105755687 - B3 SINE B2 0 216 1 5 965 1349 280 48 40 chr4 49874778 49875276 -105754844 + RMER5 LTR ERV1 33 534 0 5 965 1248 214 193 15 chr4 49875826 49876183 -105753937 + MTD LTR MaLR 1 399 -20 5 965 512 303 28 61 chr4 49877179 49877393 -105752727 + ORR1E LTR MaLR 11 217 -142 5 965 297 296 49 56 chr4 49878472 49878615 -105751505 - LTR16A1 LTR ERVL -110 346 205 5 965 269 354 30 24 chr4 49878777 49878945 -105751175 + MLT2B1 LTR ERVL 1 169 -351 5 965 322 264 70 23 chr4 49879200 49879328 -105750792 + L1MEg LINE L1 1805 1938 -4146 5 965 315 49 0 0 chr4 49879328 49879369 -105750751 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 5 965 774 247 29 33 chr4 49879496 49879739 -105750381 - Lx7 LINE L1 -523 7173 6932 5 965 656 313 0 20 chr4 49879810 49880012 -105750108 - B3A SINE B2 0 198 1 5 965 435 352 55 79 chr4 49880343 49880722 -105749398 - MamRep137 DNA TcMar? -69 375 6 5 965 431 278 125 31 chr4 49880757 49880917 -105749203 + MIRb SINE MIR 46 220 -48 5 965 486 244 38 0 chr4 49881089 49881220 -105748900 - Lx7 LINE L1 -585 7111 6976 5 965 954 63 0 0 chr4 49881340 49881466 -105748654 + (GA)n Simple_repeat Simple_repeat 1 126 0 5 965 1819 322 64 56 chr4 49881569 49882477 -105747643 + ORR1E-int LTR MaLR 2 916 -664 5 965 796 289 49 16 chr4 49882457 49882674 -105747446 + ORR1E-int LTR MaLR 1303 1527 -53 5 965 326 358 43 86 chr4 49882674 49883047 -105747073 + ORR1E LTR MaLR 1 357 -2 5 965 276 222 0 0 chr4 49883098 49883170 -105746950 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 965 833 220 71 8 chr4 49883227 49883465 -105746655 + Lx9 LINE L1 7205 7457 -187 5 965 498 341 16 0 chr4 49883640 49883763 -105746357 + RSINE1 SINE B4 3 127 -38 5 965 356 0 0 22 chr4 49883764 49883809 -105746311 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 965 235 275 73 37 chr4 49883872 49884008 -105746112 - L1MA7 LINE L1 -167 6124 5984 5 965 243 239 24 49 chr4 49884062 49884185 -105745935 + L1MA7 LINE L1 6166 6285 -6 5 965 240 35 0 0 chr4 49884247 49884276 -105745844 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 965 331 263 20 95 chr4 49885770 49885917 -105744203 - MIRb SINE MIR -44 224 89 5 965 303 342 98 29 chr4 49886155 49886399 -105743721 + L1M5 LINE L1 5351 5611 -629 5 965 241 225 0 22 chr4 49889308 49889399 -105740721 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 965 621 278 0 65 chr4 49889428 49889582 -105740538 - RSINE1 SINE B4 -14 151 8 5 965 200 174 217 0 chr4 49890233 49890279 -105739841 + MIRm SINE MIR 221 276 0 5 965 4683 139 75 16 chr4 49890592 49891598 -105738522 - Lx2 LINE L1 0 7000 5824 5 965 3060 128 6 6 chr4 49891599 49892078 -105738042 - Lx2 LINE L1 -228 5655 5177 5 965 4441 82 25 9 chr4 49892065 49892740 -105737380 - MusHAL1 LINE L1 -1745 967 282 5 965 5801 71 15 7 chr4 49892742 49893548 -105736572 - RLTR13C2 LTR ERVK 0 1033 1 5 965 4905 103 35 1 chr4 49893548 49894449 -105735671 - L1VL4 LINE L1 -2427 1132 194 5 965 7284 79 8 2 chr4 49894573 49895598 -105734522 - L1_Mus2 LINE L1 0 6566 5525 5 965 2310 120 31 85 chr4 49895664 49896119 -105734001 + RLTR1B LTR ERV1 54 512 0 5 965 27040 120 9 6 chr4 49896119 49900378 -105729742 - L1_Mus2 LINE L1 -349 5534 1264 5 965 1804 228 84 46 chr4 49900371 49901147 -105728973 - L1_Mus2 LINE L1 -5584 1032 361 5 965 903 90 0 0 chr4 49901231 49901375 -105728745 + (GAA)n Simple_repeat Simple_repeat 1 144 0 5 965 438 75 0 0 chr4 49901376 49901443 -105728677 + (CAG)n Simple_repeat Simple_repeat 1 67 0 5 965 666 0 0 0 chr4 49901443 49901517 -105728603 + (GAA)n Simple_repeat Simple_repeat 3 76 0 5 965 5826 151 10 25 chr4 49902217 49903223 -105726897 + Lx4B LINE L1 6009 6999 -59 5 965 408 20 0 0 chr4 49904147 49904196 -105725924 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 965 209 359 21 42 chr4 49905899 49905995 -105724125 - L2b LINE L2 -187 3188 3095 5 965 256 264 29 136 chr4 49907182 49907322 -105722798 + MIRb SINE MIR 73 197 -71 5 965 520 325 126 8 chr4 49907764 49908018 -105722102 - B4A SINE B4 -5 287 4 6 965 553 14 0 0 chr4 49908691 49908761 -105721359 - L1Md_T LINE L1 -1 6581 6512 6 965 1398 278 88 47 chr4 49909649 49910676 -105719444 - L1MEd LINE L1 -1302 4844 3776 6 965 492 346 75 19 chr4 49911178 49911814 -105718306 - L1MEd LINE L1 -2970 3176 2505 6 965 6669 70 32 5 chr4 49911810 49912711 -105717409 - L1Md_F2 LINE L1 -12 6570 5669 6 965 427 316 87 6 chr4 49912809 49912981 -105717139 - MLT1A0 LTR MaLR -15 350 165 6 965 278 279 98 81 chr4 49913096 49913392 -105716728 + L1MC3 LINE L1 6944 7244 -541 6 965 968 268 7 85 chr4 49913579 49913885 -105716235 - B4 SINE B4 -10 282 1 6 965 24 53 0 0 chr4 49913906 49913944 -105716176 + AT_rich Low_complexity Low_complexity 1 38 0 6 965 393 264 44 173 chr4 49913961 49914186 -105715934 - B3A SINE B2 -1 197 2 6 965 306 0 0 0 chr4 49914197 49914231 -105715889 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 965 6029 173 24 36 chr4 49914326 49915253 -105714867 - Lx5 LINE L1 -48 7002 6075 6 965 1111 215 152 39 chr4 49915253 49915412 -105714708 - RMER17C LTR ERVK -2 408 220 6 965 489 34 0 0 chr4 49915412 49915471 -105714649 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 965 1111 215 152 39 chr4 49915471 49915674 -105714446 - RMER17C LTR ERVK -191 219 5 6 965 6029 173 24 36 chr4 49915674 49915901 -105714219 - Lx5 LINE L1 -976 6074 5862 6 965 247 235 108 81 chr4 49916054 49916128 -105713992 - L1MEd LINE L1 -5456 680 605 6 965 1262 253 97 12 chr4 49916544 49916884 -105713236 - ORR1D2 LTR MaLR -1 369 1 6 965 449 301 27 134 chr4 49917031 49917292 -105712828 + Cheshire DNA MER1_type 19 251 -2169 6 965 216 97 0 0 chr4 49917370 49917401 -105712719 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 965 333 0 0 0 chr4 49918367 49918404 -105711716 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 965 437 274 83 36 chr4 49919020 49919213 -105710907 - MER20 DNA MER1_type -17 202 1 6 965 282 317 40 0 chr4 49919423 49919524 -105710596 - Lx8 LINE L1 -303 7170 7066 6 965 1850 283 46 9 chr4 49919500 49920068 -105710052 + Lx7 LINE L1 5590 6148 -1548 6 965 663 203 151 6 chr4 49920260 49920419 -105709701 + Lx7 LINE L1 6178 6359 -1337 6 965 728 261 98 8 chr4 49920390 49920626 -105709494 - Lx8 LINE L1 -367 7106 6850 6 965 322 350 115 0 chr4 49921120 49921277 -105708843 + MIRb SINE MIR 16 190 -78 6 965 187 315 60 69 chr4 49921381 49921497 -105708623 - MIRc SINE MIR -66 202 88 6 965 4531 38 27 2 chr4 49921720 49922277 -105707843 - L1Md_F2 LINE L1 0 6582 6012 6 965 590 295 31 10 chr4 49924002 49924197 -105705923 + MIRb SINE MIR 26 224 -44 6 965 194 0 39 0 chr4 49924444 49924470 -105705650 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 965 232 256 186 0 chr4 49924666 49924752 -105705368 + L1MEc LINE L1 320 421 -5979 6 965 385 264 197 43 chr4 49924743 49925068 -105705052 + L1MEc LINE L1 1060 1434 -4966 6 965 250 257 0 0 chr4 49925266 49925340 -105704780 + L1MEc LINE L1 1769 1842 -4558 6 965 325 210 81 40 chr4 49925343 49925467 -105704653 + L1MEc LINE L1 2336 2464 -3936 6 965 956 67 88 7 chr4 49925476 49925612 -105704508 + B1_Mus2 SINE Alu 1 147 0 6 965 21 36 0 0 chr4 49926322 49926350 -105703770 + AT_rich Low_complexity Low_complexity 1 28 0 6 965 3296 174 70 11 chr4 49927640 49928308 -105701812 + RMER6D LTR ERVK 9 716 -4 6 965 3164 65 0 30 chr4 49928308 49928734 -105701386 + L1_Mus2 LINE L1 6154 6566 0 6 965 895 165 160 0 chr4 49929161 49929355 -105700765 - URR1A DNA MER1_type -1 225 1 6 965 182 320 79 13 chr4 49929369 49929445 -105700675 - L2c LINE L2 -16 3371 3291 6 965 261 75 0 0 chr4 49929976 49930016 -105700104 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 965 1548 294 24 50 chr4 49930018 49930269 -105699851 - Lx7 LINE L1 -390 7306 7070 6 965 264 122 0 0 chr4 49930269 49930310 -105699810 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 965 1548 294 24 50 chr4 49930310 49930595 -105699525 - Lx7 LINE L1 -627 7069 6784 6 965 189 0 0 0 chr4 49930772 49930793 -105699327 + (T)n Simple_repeat Simple_repeat 1 21 0 6 965 3551 10 2 0 chr4 49931279 49931674 -105698446 + MTA_Mm LTR MaLR 1 396 0 6 965 204 200 0 0 chr4 49932117 49932172 -105697948 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 6 965 504 0 0 0 chr4 49932315 49932371 -105697749 + (GGA)n Simple_repeat Simple_repeat 1 56 0 6 965 237 304 0 0 chr4 49932921 49932977 -105697143 + L2b LINE L2 2959 3014 -361 6 965 200 389 34 20 chr4 49933255 49933402 -105696718 + L3 LINE CR1 4330 4478 -11 6 965 189 315 53 27 chr4 49933633 49933708 -105696412 + MIRm SINE MIR 194 270 -6 6 965 692 351 21 11 chr4 49934022 49934301 -105695819 + B4 SINE B4 1 282 -10 6 965 6559 55 2 1 chr4 49934311 49935118 -105695002 + RLTR13C2 LTR ERVK 1 808 0 6 965 290 208 93 10 chr4 49935954 49936051 -105694069 - L1MA5 LINE L1 -23 6277 6173 6 965 1340 161 34 7 chr4 49936674 49936953 -105693167 - ORR1B1 LTR MaLR -8 386 41 6 965 230 286 113 26 chr4 49937006 49937200 -105692920 + L1MA5 LINE L1 5983 6193 -107 6 965 747 276 134 12 chr4 49937285 49937763 -105692357 + L1M4 LINE L1 5195 5711 -478 6 965 411 21 0 0 chr4 49937771 49937819 -105692301 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 965 1427 123 66 0 chr4 49937819 49938047 -105692073 - RMER19B LTR ERVK -116 786 544 6 965 225 114 0 0 chr4 49938061 49938096 -105692024 + RMER19B LTR ERVK 2 36 -866 6 120 9083 148 13 36 chr4 49938096 49940306 -105689814 - L1VL4 LINE L1 -3250 2633 486 6 966 480 35 0 0 chr4 49940765 49940823 -105689297 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 6 966 4772 128 57 11 chr4 49941122 49942383 -105687737 - Lx LINE L1 -7 6647 5243 6 966 3435 63 2 111 chr4 49942543 49943076 -105687044 - MT2C_Mm LTR ERVL 0 475 1 6 966 1524 236 110 5 chr4 49943511 49943854 -105686266 + RMER4B LTR ERVK 1 384 -201 6 966 396 0 0 0 chr4 49943854 49943898 -105686222 + (CTAAT)n Simple_repeat Simple_repeat 3 46 0 6 966 1524 225 62 151 chr4 49943898 49944056 -105686064 + RMER4B LTR ERVK 345 457 -9 6 966 219 69 0 0 chr4 49944144 49944173 -105685947 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 966 636 335 77 19 chr4 49945108 49945367 -105684753 - MamRep605 Unknown Unknown -131 745 472 6 966 23 0 0 0 chr4 49945367 49945390 -105684730 + AT_rich Low_complexity Low_complexity 1 23 0 6 966 1947 59 2 31 chr4 49945964 49946241 -105683879 - L1_Mus2 LINE L1 -252 5931 5633 6 966 5119 80 13 6 chr4 49946241 49946932 -105683188 + L1_Mus2 LINE L1 5865 6560 -6 6 966 28 0 0 0 chr4 49947270 49947298 -105682822 + AT_rich Low_complexity Low_complexity 1 28 0 6 966 1044 265 92 3 chr4 49947298 49947612 -105682508 - Lx3C LINE L1 -2 6974 6633 6 966 180 111 0 0 chr4 49947612 49947639 -105682481 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 966 8118 129 30 16 chr4 49947645 49948270 -105681850 - Lx3C LINE L1 -2 6974 6335 6 966 3207 46 5 2 chr4 49948270 49948665 -105681455 + MTA_Mm LTR MaLR 1 396 0 6 966 8118 129 30 16 chr4 49948665 49949342 -105680778 - Lx3C LINE L1 -642 6334 5654 6 966 1337 230 47 63 chr4 49949377 49949757 -105680363 - ORR1D1 LTR MaLR 0 374 1 6 966 5084 161 26 37 chr4 49949899 49950811 -105679309 + RMER19B LTR ERVK 1 902 0 6 966 1964 170 3 35 chr4 49951813 49952184 -105677936 + RLTR15 LTR ERVK 1 359 0 6 966 184 322 108 42 chr4 49953226 49953346 -105676774 + L3 LINE CR1 795 922 -3567 6 966 181 345 70 17 chr4 49953590 49953705 -105676415 - L2c LINE L2 -20 3367 3247 6 966 201 239 0 0 chr4 49954712 49954758 -105675362 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 966 22 56 0 0 chr4 49954791 49954827 -105675293 + AT_rich Low_complexity Low_complexity 1 36 0 6 966 180 204 98 39 chr4 49955902 49955953 -105674167 - L4 LINE RTE -882 1147 1094 6 966 245 301 57 57 chr4 49956141 49956229 -105673891 - MLT1H1 LTR MaLR -420 135 48 6 966 273 288 7 114 chr4 49956314 49956463 -105673657 - Lx6 LINE L1 -26 7434 7302 6 966 388 265 73 110 chr4 49956495 49956540 -105673580 - B2_Mm1t SINE B2 -9 184 138 6 966 267 79 0 0 chr4 49956540 49956578 -105673542 + (TATG)n Simple_repeat Simple_repeat 1 38 0 6 966 715 245 9 11 chr4 49956578 49956723 -105673397 - B3 SINE B2 -76 140 1 6 966 249 302 117 8 chr4 49958460 49958580 -105671540 + LTR50 LTR ERVL 72 204 -591 6 966 253 273 8 21 chr4 49960809 49960885 -105669235 - ID4_ SINE ID -73 79 4 6 966 238 316 7 0 chr4 49961325 49961399 -105668721 - B1F1 SINE Alu -51 76 1 6 966 2244 116 40 24 chr4 49961558 49961928 -105668192 - Lx LINE L1 -9 6645 6270 6 966 4796 211 122 18 chr4 49962415 49963447 -105666673 + Lx9 LINE L1 6320 7460 -184 6 966 2203 83 119 11 chr4 49963447 49963799 -105666321 + RLTR10 LTR ERVK 1 390 0 6 966 4796 211 122 18 chr4 49963799 49963959 -105666161 + Lx9 LINE L1 7461 7636 -8 6 966 183 250 0 150 chr4 49965435 49965515 -105664605 - MER5B DNA MER1_type -109 69 2 6 966 26 30 0 0 chr4 49966193 49966226 -105663894 + AT_rich Low_complexity Low_complexity 1 33 0 6 966 22 0 0 0 chr4 49966268 49966290 -105663830 + AT_rich Low_complexity Low_complexity 1 22 0 6 966 354 406 23 0 chr4 49966306 49966439 -105663681 - ID_B1 SINE B4 -6 218 83 6 966 1420 87 5 0 chr4 49966463 49966658 -105663462 - L1_Mus2 LINE L1 -1 6565 6370 6 966 286 70 0 65 chr4 49966663 49966709 -105663411 - L1_Mus2 LINE L1 -741 5897 5855 6 966 545 290 20 30 chr4 49966746 49966945 -105663175 - B3A SINE B2 -1 197 1 6 966 555 204 194 28 chr4 49967610 49967827 -105662293 - Lx9 LINE L1 -6 7638 7386 6 966 29 28 0 0 chr4 49967919 49967955 -105662165 + AT_rich Low_complexity Low_complexity 1 36 0 6 966 897 108 0 65 chr4 49968063 49968232 -105661888 - L1Md_F2 LINE L1 0 6582 6425 6 966 3685 72 4 0 chr4 49968605 49969089 -105661031 + L1Md_F2 LINE L1 6096 6581 -1 6 966 1951 241 68 6 chr4 49969558 49970047 -105660073 - LTR53 LTR ERVL 0 519 1 6 966 2426 269 65 52 chr4 49970820 49971742 -105658378 - Lx8 LINE L1 -252 7221 6288 6 966 381 75 0 0 chr4 49971822 49971875 -105658245 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 966 1289 249 28 48 chr4 49972025 49972380 -105657740 + Lx6 LINE L1 7109 7456 -4 6 966 441 290 30 56 chr4 49972474 49972671 -105657449 - RLTR23 LTR ERV1 0 430 239 6 966 965 306 56 16 chr4 49972938 49973513 -105656607 + L1MA6 LINE L1 2454 3051 -3092 7 966 453 244 40 40 chr4 49973491 49973713 -105656407 + L1MA6 LINE L1 3171 3392 -2751 7 966 305 346 53 0 chr4 49973800 49973933 -105656187 + L1MA6 LINE L1 3449 3588 -2555 7 966 2893 284 82 23 chr4 49974155 49975653 -105654467 + L1MA6 LINE L1 3659 5245 -898 7 966 2604 292 55 80 chr4 49975710 49976834 -105653286 + Lx8 LINE L1 6367 7462 -11 7 966 2374 264 39 10 chr4 49976873 49977664 -105652456 + L1MA6 LINE L1 5327 6140 -160 7 966 578 319 0 24 chr4 49977751 49977918 -105652202 - RSINE1 SINE B4 0 165 3 7 966 265 292 60 65 chr4 49978193 49978409 -105651711 - LTR73 LTR ERV1 -113 459 245 7 966 277 277 40 0 chr4 49979092 49979193 -105650927 + BC1_Mm scRNA scRNA 15 119 -33 7 966 766 163 102 66 chr4 49979556 49979753 -105650367 + Lx4B LINE L1 6851 7054 -4 7 966 1175 297 104 20 chr4 49981048 49981491 -105648629 - MLT1D LTR MaLR -26 479 13 7 966 312 94 0 0 chr4 49981871 49981924 -105648196 + (T)n Simple_repeat Simple_repeat 1 53 0 7 966 1363 256 97 5 chr4 49982452 49982822 -105647298 - Lx4B LINE L1 -1 7057 6654 7 966 453 127 0 0 chr4 49983571 49983650 -105646470 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 966 3171 209 91 23 chr4 49984424 49985202 -105644918 - Lx9 LINE L1 -28 7616 6786 7 966 534 57 0 0 chr4 49985723 49985793 -105644327 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 966 647 273 52 48 chr4 49985859 49986062 -105644058 + Lx7 LINE L1 7158 7366 -330 7 966 3512 149 41 31 chr4 49986062 49986380 -105643740 + RMER6C LTR ERVK 1 326 -364 7 966 198 0 0 0 chr4 49986380 49986402 -105643718 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 966 3512 149 41 31 chr4 49986402 49986766 -105643354 + RMER6C LTR ERVK 327 690 0 7 966 647 273 52 48 chr4 49986766 49986831 -105643289 + Lx7 LINE L1 7367 7427 -269 7 966 252 59 0 0 chr4 49986837 49986871 -105643249 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 966 251 253 58 0 chr4 49986920 49987007 -105643113 + Lx7 LINE L1 7605 7696 0 7 966 466 315 54 52 chr4 49987086 49987608 -105642512 + L1M6 LINE L1 1089 1611 -4885 7 966 35 54 0 0 chr4 49987956 49988012 -105642108 + AT_rich Low_complexity Low_complexity 1 56 0 7 966 232 227 227 0 chr4 49988226 49988292 -105641828 - ID4_ SINE ID 0 83 3 7 966 255 326 31 10 chr4 49988307 49988403 -105641717 - PB1D10 SINE Alu -5 112 15 7 966 180 0 0 0 chr4 49990746 49990766 -105639354 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 966 408 326 15 29 chr4 49991080 49991216 -105638904 + RSINE1 SINE B4 8 141 -24 7 966 369 0 0 0 chr4 49991240 49991281 -105638839 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 966 486 0 0 0 chr4 49991526 49991580 -105638540 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 966 375 276 120 40 chr4 49992397 49992597 -105637523 + MIR SINE MIR 8 223 -39 7 966 355 382 60 34 chr4 49992816 49993084 -105637036 + MLT1J-int LTR MaLR 649 923 -464 7 966 227 49 0 47 chr4 49993349 49993392 -105636728 + L1Md_F3 LINE L1 6529 6569 -15 7 966 3449 53 9 0 chr4 49993452 49993889 -105636231 + L1Md_F2 LINE L1 6142 6582 0 7 966 507 329 77 94 chr4 49994588 49994940 -105635180 + ORR1E LTR MaLR 3 348 -11 7 966 684 290 36 9 chr4 49994951 49995174 -105634946 + ORR1E-int LTR MaLR 1 229 -1351 7 966 1048 171 29 19 chr4 49995170 49995379 -105634741 - MTC-int LTR MaLR -1042 216 6 7 966 860 222 72 13 chr4 49995382 49995679 -105634441 - MTC LTR MaLR 0 421 5 7 966 4167 232 99 15 chr4 49995726 49996817 -105633303 + Lx7 LINE L1 6093 7275 -421 7 966 598 91 20 0 chr4 49996829 49996928 -105633192 + (GA)n Simple_repeat Simple_repeat 2 102 0 7 966 549 0 0 0 chr4 49997139 49997200 -105632920 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 966 1031 302 193 49 chr4 49997212 49997506 -105632614 + ORR1E-int LTR MaLR 888 1246 -334 7 966 3418 50 28 7 chr4 49997506 49997933 -105632187 + RLTR10C LTR ERVK 1 436 0 7 966 1031 302 193 49 chr4 49997933 49998212 -105631908 + ORR1E-int LTR MaLR 1247 1543 -37 7 966 250 296 61 0 chr4 49998217 49998315 -105631805 + MIR SINE MIR 53 156 -106 7 966 1841 224 21 69 chr4 49998354 49998935 -105631185 + RLTR31_Mur LTR ERVK 1 553 0 7 966 396 0 0 0 chr4 49998984 49999028 -105631092 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 7 966 801 240 44 131 chr4 49999364 49999807 -105630313 - RMER16 LTR ERVK 0 533 1 7 966 21 36 0 0 chr4 50000110 50000138 -105629982 + AT_rich Low_complexity Low_complexity 1 28 0 1 966 473 339 64 24 chr4 50000293 50000544 -105629576 + L4 LINE RTE 687 947 -1082 2 966 736 131 0 28 chr4 50000696 50000837 -105629283 + Lx LINE L1 6515 6651 -3 3 966 181 347 54 76 chr4 50000956 50001140 -105628980 + L2 LINE L2 2257 2436 -983 4 966 4030 53 16 4 chr4 50001564 50002077 -105628043 - L1Md_F2 LINE L1 -3 6579 6061 5 966 3538 47 0 63 chr4 50002079 50002420 -105627700 + L1_Mm LINE L1 3596 3936 -1947 6 966 1112 75 7 7 chr4 50002420 50002567 -105627553 + B1_Mus2 SINE Alu 1 147 0 7 966 3538 47 0 63 chr4 50002567 50002750 -105627370 + L1_Mm LINE L1 3937 4087 -1796 6 966 894 52 0 0 chr4 50003808 50003917 -105626203 + B1_Mm SINE Alu 29 137 -10 8 966 669 25 0 0 chr4 50003917 50003996 -105626124 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 9 966 405 0 0 0 chr4 50005397 50005442 -105624678 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 966 357 349 65 9 chr4 50005446 50005553 -105624567 - RSINE1 SINE B4 0 165 53 1 966 25 0 0 28 chr4 50006580 50006597 -105623523 + AT_rich Low_complexity Low_complexity 1 17 0 1 966 4878 2 0 0 chr4 50006597 50007132 -105622988 + L1Md_A LINE L1 6047 6581 -1 1 966 25 0 0 28 chr4 50007132 50007150 -105622970 + AT_rich Low_complexity Low_complexity 1 18 0 1 966 269 302 58 11 chr4 50007715 50007802 -105622318 + MIR SINE MIR 94 184 -78 1 966 2106 175 17 17 chr4 50007947 50008354 -105621766 + MTB_Mm LTR MaLR 1 407 0 1 966 195 42 0 0 chr4 50008451 50008475 -105621645 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 966 1184 268 103 49 chr4 50009825 50010213 -105619907 + MTD LTR MaLR 10 418 -1 1 966 32814 68 6 10 chr4 50010513 50014975 -105615145 - L1Md_F2 LINE L1 0 6582 2110 1 966 8254 34 1 0 chr4 50014975 50015949 -105614171 + L1Md_T LINE L1 5608 6582 0 2 966 32814 100 8 21 chr4 50015949 50017480 -105612640 - L1Md_F2 LINE L1 -3774 2109 631 1 966 1252 166 0 18 chr4 50017907 50018128 -105611992 - Lx2 LINE L1 -6 6991 6775 2 966 3287 132 164 2 chr4 50018128 50018757 -105611363 - Lx2 LINE L1 -354 6643 5913 2 966 351 0 0 0 chr4 50022432 50022471 -105607649 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 966 194 292 8 117 chr4 50022633 50022753 -105607367 + L2c LINE L2 3281 3387 0 2 966 1317 204 175 6 chr4 50025010 50025183 -105604937 - ORR1D1 LTR MaLR 0 374 164 2 966 489 34 0 0 chr4 50025183 50025242 -105604878 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 966 1317 204 175 6 chr4 50025242 50025388 -105604732 - ORR1D1 LTR MaLR -211 163 1 2 966 259 321 49 0 chr4 50025598 50025679 -105604441 - B4A SINE B4 -150 142 58 2 966 4783 133 19 7 chr4 50025805 50026533 -105603587 + RMER19A LTR ERVK 1 737 0 2 966 374 323 145 25 chr4 50026552 50026787 -105603333 + LTR16A1 LTR ERVL 180 442 -14 2 966 1057 320 95 69 chr4 50027010 50027547 -105602573 - MLT1F2 LTR MaLR -5 555 5 2 966 2739 186 47 83 chr4 50027990 50028363 -105601757 + RMER6C LTR ERVK 8 339 -381 3 966 474 18 0 0 chr4 50028363 50028418 -105601702 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 966 2739 176 55 69 chr4 50028418 50028781 -105601339 + RMER6C LTR ERVK 338 690 0 3 966 258 340 17 20 chr4 50029176 50029279 -105600841 - B1F SINE Alu -5 115 11 3 966 251 274 40 27 chr4 50029568 50029643 -105600477 - MER5A1 DNA MER1_type -16 150 75 3 966 417 20 0 0 chr4 50029652 50029702 -105600418 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 966 295 275 33 99 chr4 50029824 50029945 -105600175 - B4A SINE B4 -68 224 112 3 966 2344 244 37 10 chr4 50030772 50031444 -105598676 + Lx9 LINE L1 6953 7642 -2 3 966 941 138 0 0 chr4 50031458 50031634 -105598486 - Lx2A1 LINE L1 -1295 5713 5538 3 966 4356 195 21 33 chr4 50031629 50032598 -105597522 + Lx LINE L1 5691 6647 -7 3 966 7110 63 9 25 chr4 50032787 50034006 -105596114 + L1_Mus2 LINE L1 5367 6566 0 3 966 922 268 81 50 chr4 50034591 50034717 -105595403 - MTEa LTR MaLR -30 349 202 4 966 186 43 0 0 chr4 50034717 50034740 -105595380 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 966 922 268 81 50 chr4 50034740 50034935 -105595185 - MTEa LTR MaLR -178 201 18 4 966 215 135 27 0 chr4 50035056 50035093 -105595027 + (CACCAT)n Simple_repeat Simple_repeat 1 38 0 4 966 348 152 0 0 chr4 50036996 50037062 -105593058 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 966 227 337 0 19 chr4 50037287 50037393 -105592727 + (CATATA)n Simple_repeat Simple_repeat 1 104 0 4 966 333 0 0 0 chr4 50037482 50037519 -105592601 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 966 312 279 30 23 chr4 50037670 50037802 -105592318 - MLT1C LTR MaLR -334 133 1 4 966 4906 62 6 21 chr4 50038943 50039598 -105590522 - L1Md_F2 LINE L1 0 6582 5938 4 966 344 328 52 106 chr4 50039746 50040169 -105589951 - HAL1 LINE L1 -1270 1237 838 4 966 657 110 0 0 chr4 50040353 50040462 -105589658 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 966 234 250 14 14 chr4 50040462 50040531 -105589589 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 5 966 450 0 0 0 chr4 50040624 50040674 -105589446 + (T)n Simple_repeat Simple_repeat 1 50 0 5 966 259 273 56 11 chr4 50040754 50040843 -105589277 + L1MA4 LINE L1 5438 5530 -767 5 966 452 260 40 16 chr4 50040927 50041127 -105588993 + L1MA4 LINE L1 5668 5874 -423 5 966 809 204 165 16 chr4 50041138 50041332 -105588788 - URR1B DNA MER1_type -1 224 2 5 966 270 0 0 0 chr4 50041406 50041436 -105588684 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 966 566 304 98 20 chr4 50041942 50042187 -105587933 + MLT1E2 LTR MaLR 349 612 -15 5 966 418 271 192 0 chr4 50042607 50042758 -105587362 + MLT1A0 LTR MaLR 171 350 -15 5 966 310 345 40 40 chr4 50043074 50043225 -105586895 + MLT1A0-int LTR MaLR 26 176 -1211 5 966 184 232 70 18 chr4 50043305 50043362 -105586758 - MER5B DNA MER1_type -1 177 118 5 966 625 284 24 9 chr4 50043450 50043660 -105586460 + ID_B1 SINE B4 1 213 -11 5 966 244 294 43 76 chr4 50043774 50043866 -105586254 + MLT1A0-int LTR MaLR 700 788 -621 5 966 216 0 0 0 chr4 50044540 50044564 -105585556 + (A)n Simple_repeat Simple_repeat 1 24 0 5 966 1633 28 14 28 chr4 50045013 50045231 -105584889 - L1Md_F3 LINE L1 0 6584 6370 6 966 236 164 18 18 chr4 50045769 50045825 -105584295 - L1M4 LINE L1 -5706 836 781 6 966 308 284 77 34 chr4 50047371 50047579 -105582541 - L1M2 LINE L1 -1204 4939 4723 6 966 232 257 0 0 chr4 50047698 50047768 -105582352 - L1_Mur1 LINE L1 -1516 4370 4301 6 966 237 336 9 71 chr4 50047917 50047997 -105582123 + ID_B1 SINE B4 115 187 -37 6 966 746 88 17 9 chr4 50047997 50048128 -105581992 + B1_Mus2 SINE Alu 3 141 -9 6 966 189 0 0 0 chr4 50048128 50048149 -105581971 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 966 1821 133 297 10 chr4 50049849 50050260 -105579860 - RLTR24 LTR ERV1 0 529 1 6 966 367 376 135 35 chr4 50052392 50052769 -105577351 + LTR16D1 LTR ERVL 206 620 -55 6 966 22 0 0 0 chr4 50053149 50053171 -105576949 + AT_rich Low_complexity Low_complexity 1 22 0 6 966 280 250 40 0 chr4 50053732 50053808 -105576312 + CT-rich Low_complexity Low_complexity 2 80 0 7 966 1090 301 67 15 chr4 50054301 50054692 -105575428 - MTD LTR MaLR -3 416 6 7 966 327 320 62 56 chr4 50055182 50055361 -105574759 - B3A SINE B2 -16 182 3 7 966 613 227 84 74 chr4 50055507 50055697 -105574423 + B3A SINE B2 2 193 -5 7 966 375 23 0 0 chr4 50055764 50055808 -105574312 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 966 22 0 0 0 chr4 50056469 50056491 -105573629 + AT_rich Low_complexity Low_complexity 1 22 0 7 966 472 260 14 58 chr4 50056637 50056845 -105573275 + Lx7 LINE L1 7217 7415 -281 7 966 180 0 0 0 chr4 50058020 50058040 -105572080 + (A)n Simple_repeat Simple_repeat 1 20 0 7 966 260 299 0 0 chr4 50058948 50059015 -105571105 + Tigger13a DNA MER2_type 8 74 -697 7 966 378 0 0 0 chr4 50059430 50059472 -105570648 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7 966 21 57 0 0 chr4 50059578 50059613 -105570507 + AT_rich Low_complexity Low_complexity 1 35 0 8 966 311 0 26 0 chr4 50059637 50059676 -105570444 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 8 966 3489 224 73 20 chr4 50059797 50060631 -105569489 - Lx6 LINE L1 -5 7455 6578 8 966 390 74 0 0 chr4 50060776 50060830 -105569290 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 8 966 1944 229 24 33 chr4 50060862 50061397 -105568723 + Lx9 LINE L1 7014 7626 -18 8 966 7197 120 30 14 chr4 50061871 50063731 -105566389 + L1VL1 LINE L1 214 2108 -1590 8 966 283 314 62 29 chr4 50064595 50064747 -105565373 - ORR1E LTR MaLR -198 172 26 8 966 1186 55 0 7 chr4 50065509 50065657 -105564463 + B1_Mm SINE Alu 1 147 0 8 966 459 0 0 0 chr4 50066229 50066280 -105563840 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 966 780 42 0 0 chr4 50066499 50066595 -105563525 + (CA)n Simple_repeat Simple_repeat 2 97 0 8 966 328 263 35 0 chr4 50066596 50066710 -105563410 - L1MA4A LINE L1 -367 5936 5819 9 966 459 0 0 0 chr4 50067384 50067435 -105562685 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 966 340 240 8 111 chr4 50067446 50067563 -105562557 + B3A SINE B2 2 106 -92 9 966 235 224 17 0 chr4 50067632 50067690 -105562430 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 966 199 343 30 0 chr4 50068277 50068344 -105561776 + MIR3 SINE MIR 119 187 -21 9 966 274 297 17 0 chr4 50068704 50068822 -105561298 + (CA)n Simple_repeat Simple_repeat 1 120 0 9 966 459 0 0 0 chr4 50068832 50068883 -105561237 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 966 332 289 0 19 chr4 50068933 50069074 -105561046 + (CAGAGA)n Simple_repeat Simple_repeat 3 141 0 9 966 486 49 0 0 chr4 50069074 50069135 -105560985 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 966 332 289 0 19 chr4 50069135 50069148 -105560972 + (CAGAGA)n Simple_repeat Simple_repeat 4 16 0 9 967 38053 41 0 3 chr4 50069843 50076062 -105554058 - L1Md_T LINE L1 0 6585 289 1 967 1390 218 96 37 chr4 50076174 50076323 -105553797 + ORR1D1 LTR MaLR 1 146 -228 1 967 330 26 0 0 chr4 50076323 50076362 -105553758 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 967 1390 218 96 37 chr4 50076362 50076565 -105553555 + ORR1D1 LTR MaLR 147 374 0 1 967 378 322 94 21 chr4 50077038 50077273 -105552847 + L1MD LINE L1 4906 5157 -989 1 967 272 333 13 13 chr4 50077274 50077353 -105552767 + B1_Mur3 SINE Alu 5 83 -66 1 967 2672 195 42 66 chr4 50077469 50078165 -105551955 - RMER6C LTR ERVK 0 690 12 1 967 267 54 0 0 chr4 50079256 50079293 -105550827 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 967 204 229 24 43 chr4 50080316 50080384 -105549736 - L2a LINE L2 -4 3422 3317 1 967 1728 91 43 4 chr4 50080820 50081075 -105549045 - Lx2 LINE L1 0 6997 6733 1 967 241 154 0 0 chr4 50081095 50081134 -105548986 + Lx4B LINE L1 6690 6728 -330 1 967 225 0 0 0 chr4 50081154 50081179 -105548941 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 967 561 68 0 0 chr4 50081825 50081899 -105548221 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 967 395 185 11 0 chr4 50081900 50081992 -105548128 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 967 977 280 96 48 chr4 50082156 50082595 -105547525 + Lx9 LINE L1 7016 7475 -169 1 967 1251 169 2 0 chr4 50082585 50082808 -105547312 - Lx2 LINE L1 -181 6816 6617 1 967 29 47 0 0 chr4 50082812 50082855 -105547265 + AT_rich Low_complexity Low_complexity 1 43 0 1 967 1223 48 0 0 chr4 50082855 50083001 -105547119 + B1_Mus2 SINE Alu 2 147 0 1 967 414 202 0 0 chr4 50083026 50083125 -105546995 + Lx9 LINE L1 7529 7627 -17 1 967 756 107 0 0 chr4 50083357 50083469 -105546651 + (TCCC)n Simple_repeat Simple_repeat 3 114 0 1 967 908 314 0 13 chr4 50083484 50083710 -105546410 - ID_B1 SINE B4 0 224 2 1 967 707 306 45 91 chr4 50084112 50084341 -105545779 - L1MD2 LINE L1 -1 6358 6142 1 967 204 97 0 0 chr4 50084341 50084372 -105545748 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 967 707 306 45 91 chr4 50084372 50084670 -105545450 - L1MD2 LINE L1 -218 6141 5855 1 967 228 266 16 0 chr4 50085775 50085839 -105544281 - MIR3 SINE MIR -4 204 140 1 967 219 139 0 0 chr4 50085840 50085876 -105544244 + (A)n Simple_repeat Simple_repeat 1 36 0 1 967 22 56 0 0 chr4 50087248 50087284 -105542836 + AT_rich Low_complexity Low_complexity 1 36 0 1 967 313 293 33 20 chr4 50087501 50087651 -105542469 - L1ME4a LINE L1 -1 6123 5972 1 967 2783 303 73 3 chr4 50087852 50088778 -105541342 - Lx8 LINE L1 -146 7327 6337 1 967 31 44 0 0 chr4 50088860 50088905 -105541215 + AT_rich Low_complexity Low_complexity 1 45 0 1 967 490 109 27 18 chr4 50088936 50089048 -105541072 + (TA)n Simple_repeat Simple_repeat 1 113 0 1 967 567 264 32 0 chr4 50089049 50089174 -105540946 - B3 SINE B2 -87 129 1 1 967 633 249 71 0 chr4 50089182 50089351 -105540769 + MTEb LTR MaLR 199 379 0 1 967 426 316 70 120 chr4 50089596 50089970 -105540150 - ORR1E LTR MaLR -1 358 4 1 967 417 118 39 13 chr4 50091035 50091112 -105539008 + URR1A DNA MER1_type 60 138 -88 1 967 678 321 57 41 chr4 50091119 50091434 -105538686 + RLTR23 LTR ERV1 100 419 -11 1 967 281 154 72 58 chr4 50091467 50091536 -105538584 + URR1A DNA MER1_type 147 216 -10 1 967 4251 172 55 68 chr4 50091682 50092592 -105537528 + RMER19B LTR ERVK 5 902 0 1 967 619 318 54 69 chr4 50093266 50093672 -105536448 + L1MDa LINE L1 118 517 -6116 1 967 445 297 166 50 chr4 50093929 50094432 -105535688 + L1MDa LINE L1 1106 1680 -4953 1 967 1194 81 69 6 chr4 50094432 50094605 -105535515 + B2_Mm2 SINE B2 2 185 -10 1 967 445 297 166 50 chr4 50094605 50094661 -105535459 + L1MDa LINE L1 1681 1730 -4903 1 967 376 333 10 0 chr4 50094816 50094918 -105535202 - PB1D7 SINE Alu -1 119 17 1 967 308 366 22 36 chr4 50094843 50094982 -105535138 - ID_B1 SINE B4 -55 169 33 1 967 422 320 16 16 chr4 50095430 50095554 -105534566 - ID_B1 SINE B4 -6 218 95 1 967 39 22 0 0 chr4 50095642 50095688 -105534432 + AT_rich Low_complexity Low_complexity 1 46 0 1 967 535 306 0 53 chr4 50095821 50096011 -105534109 + B3A SINE B2 1 180 -18 1 967 2065 250 138 32 chr4 50096030 50096753 -105533367 + Lx9 LINE L1 6674 7473 -171 1 967 672 48 0 0 chr4 50096764 50096848 -105533272 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 967 1757 234 0 122 chr4 50096873 50097156 -105532964 + MTC LTR MaLR 1 245 -176 1 967 1119 51 0 14 chr4 50097156 50097296 -105532824 - B1_Mm SINE Alu -9 138 1 1 967 1757 234 0 122 chr4 50097296 50097489 -105532631 + MTC LTR MaLR 246 419 -2 1 967 299 178 12 131 chr4 50097536 50097557 -105532563 + MT2B LTR ERVL 148 221 -380 1 967 437 159 0 0 chr4 50097557 50097620 -105532500 + PB1D9 SINE Alu 2 64 -56 1 967 7421 64 20 0 chr4 50097632 50098501 -105531619 - L1_Mus1 LINE L1 -1 6566 5690 1 967 387 0 0 0 chr4 50098501 50098544 -105531576 + (TTATA)n Simple_repeat Simple_repeat 5 47 0 1 967 7421 104 18 3 chr4 50098544 50099175 -105530945 - L1_Mus1 LINE L1 -194 5689 5049 1 967 707 56 0 0 chr4 50099175 50099265 -105530855 + B1_Mus2 SINE Alu 50 139 -8 1 967 297 0 0 0 chr4 50099265 50099298 -105530822 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 967 2216 233 47 62 chr4 50099385 50100034 -105530086 - RMER1B Other Other -1 1065 233 1 967 21 0 0 0 chr4 50100084 50100105 -105530015 + AT_rich Low_complexity Low_complexity 1 21 0 1 967 325 194 14 14 chr4 50100197 50100270 -105529850 - L1MB8 LINE L1 -5 6173 6101 1 967 386 217 0 12 chr4 50100261 50100345 -105529775 - L1MB8 LINE L1 -275 5903 5821 1 967 307 203 135 0 chr4 50100487 50100561 -105529559 - PB1D10 SINE Alu -3 114 31 1 967 2825 309 111 45 chr4 50101549 50103114 -105527006 - Lx8 LINE L1 -5 7468 5798 1 967 542 284 171 0 chr4 50103114 50103290 -105526830 - B3 SINE B2 -6 210 5 1 967 2825 281 42 44 chr4 50103290 50103601 -105526519 - Lx8 LINE L1 -1676 5797 5472 1 967 1498 294 59 14 chr4 50103608 50104167 -105525953 + L1_Mur3 LINE L1 4476 5059 -821 1 967 8732 50 7 0 chr4 50104169 50105957 -105524163 - L1Md_F2 LINE L1 -1 6581 4780 1 967 354 69 103 0 chr4 50105943 50106001 -105524119 - L1Md_F2 LINE L1 -5733 991 928 1 967 332 136 18 26 chr4 50106211 50106324 -105523796 + A-rich Low_complexity Low_complexity 2 113 0 1 967 294 232 62 9 chr4 50106354 50106467 -105523653 + L1_Mur3 LINE L1 5339 5457 -423 1 967 21 0 0 0 chr4 50106832 50106853 -105523267 + AT_rich Low_complexity Low_complexity 1 21 0 1 967 1051 272 95 29 chr4 50106853 50107201 -105522919 - Lx8 LINE L1 0 7473 7103 1 967 2141 324 57 19 chr4 50107180 50108055 -105522065 - Lx8 LINE L1 -530 6943 6036 1 967 984 254 7 18 chr4 50108123 50108400 -105521720 + MTE2b-int LTR MaLR 1305 1578 -2 1 967 1427 252 16 26 chr4 50108401 50108784 -105521336 + MTE2b LTR MaLR 1 379 0 1 967 7780 29 1 6 chr4 50109302 50110233 -105519887 - L1Md_F3 LINE L1 -2 6582 5657 1 967 190 246 14 97 chr4 50110450 50110522 -105519598 + MIRc SINE MIR 75 140 -128 1 967 721 238 51 36 chr4 50110907 50111103 -105519017 - B3 SINE B2 -2 214 16 1 967 220 27 54 0 chr4 50111933 50111970 -105518150 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 967 24 0 0 0 chr4 50114519 50114543 -105515577 + AT_rich Low_complexity Low_complexity 1 24 0 1 967 20381 65 9 46 chr4 50114586 50118307 -105511813 - L1Md_F2 LINE L1 -1 6581 3020 1 967 428 227 134 18 chr4 50118369 50118481 -105511639 - B1_Mus1 SINE Alu 0 148 24 1 967 326 27 0 0 chr4 50118481 50118518 -105511602 + L1_Mm LINE L1 3490 3526 -2357 1 967 23 92 0 0 chr4 50119196 50119261 -105510859 + AT_rich Low_complexity Low_complexity 1 65 0 1 967 375 23 0 0 chr4 50119724 50119768 -105510352 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 967 558 0 0 0 chr4 50119768 50119829 -105510291 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 967 480 302 74 55 chr4 50121072 50121328 -105508792 - Lx8 LINE L1 -89 7384 7124 1 967 182 118 0 29 chr4 50121389 50121424 -105508696 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 967 219 69 0 0 chr4 50123458 50123487 -105506633 + (TATATG)n Simple_repeat Simple_repeat 4 32 0 1 967 26 0 0 0 chr4 50126403 50126429 -105503691 + AT_rich Low_complexity Low_complexity 1 26 0 1 967 2348 82 126 0 chr4 50127299 50127664 -105502456 + IAPLTR2a LTR ERVK 1 411 0 1 967 1963 53 4 0 chr4 50127974 50128217 -105501903 + L1_Mus1 LINE L1 6317 6560 -7 1 967 332 237 106 41 chr4 50129293 50129416 -105500704 + MTEb LTR MaLR 2 132 -247 1 967 3008 237 52 12 chr4 50129760 50130498 -105499622 + Lx6 LINE L1 5956 6722 -738 1 967 33 0 0 0 chr4 50130760 50130793 -105499327 + AT_rich Low_complexity Low_complexity 1 33 0 1 967 300 299 139 18 chr4 50130862 50131193 -105498927 - L1MEc LINE L1 -1022 5297 4927 1 967 401 83 0 0 chr4 50131432 50131492 -105498628 - L1_Mus1 LINE L1 -3 6564 6505 1 967 240 301 10 10 chr4 50131635 50131739 -105498381 - L1MEc LINE L1 -4008 2407 2304 1 967 31 73 0 30 chr4 50132011 50132110 -105498010 + AT_rich Low_complexity Low_complexity 1 96 0 1 967 207 0 0 0 chr4 50132173 50132196 -105497924 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 967 260 289 62 75 chr4 50132321 50132482 -105497638 + MYSERV16_I-int LTR ERVK 209 367 -2475 1 967 796 219 6 39 chr4 50132758 50133036 -105497084 + MYSERV16_I-int LTR ERVK 1112 1356 -1486 1 967 2557 185 105 22 chr4 50133036 50133638 -105496482 + MYSERV16_I-int LTR ERVK 282 933 -1393 1 967 6014 138 82 4 chr4 50133632 50134794 -105495326 + MYSERV16_I-int LTR ERVK 1051 2301 -25 1 967 282 29 0 0 chr4 50134794 50134829 -105495291 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 967 6014 138 82 4 chr4 50134829 50134848 -105495272 + MYSERV16_I-int LTR ERVK 2302 2323 -3 1 967 735 264 56 144 chr4 50134856 50135410 -105494710 + RLTR16 LTR ERVK 1 505 0 1 967 3063 39 0 0 chr4 50135433 50135790 -105494330 - IAPEY2_LTR LTR ERVK 0 357 1 1 967 229 231 100 71 chr4 50135799 50136009 -105494111 - L1MEc LINE L1 -4517 1883 1668 1 967 422 351 44 4 chr4 50136031 50136257 -105493863 - L1MEc LINE L1 -4869 1531 1297 1 967 2907 173 49 5 chr4 50136543 50137111 -105493009 - Lx LINE L1 -15 6639 6047 1 967 2807 128 6 23 chr4 50137141 50137614 -105492506 + L1_Mur2 LINE L1 3670 4134 -1743 1 967 250 204 81 10 chr4 50137626 50137725 -105492395 - L1MEc LINE L1 -5628 772 667 1 967 1816 209 24 11 chr4 50138111 50138484 -105491636 + ORR1C1 LTR MaLR 1 378 0 1 967 24 53 0 0 chr4 50138551 50138589 -105491531 + AT_rich Low_complexity Low_complexity 1 38 0 1 967 402 325 0 9 chr4 50138611 50138726 -105491394 + MLT1A0 LTR MaLR 249 362 -3 1 967 522 0 0 0 chr4 50138978 50139036 -105491084 + (CCA)n Simple_repeat Simple_repeat 1 58 0 1 967 436 295 20 0 chr4 50140571 50140720 -105489400 - LTR41B LTR ERVL -22 736 585 1 967 378 0 0 0 chr4 50141124 50141166 -105488954 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 967 205 88 29 0 chr4 50141503 50141537 -105488583 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1 967 7812 59 6 0 chr4 50141539 50142560 -105487560 - L1_Mus1 LINE L1 -1 6566 5540 1 967 1713 69 0 0 chr4 50142560 50142777 -105487343 + L1_Mus1 LINE L1 5325 5541 -342 1 967 180 0 0 0 chr4 50143435 50143455 -105486665 + (T)n Simple_repeat Simple_repeat 1 20 0 2 967 478 114 52 12 chr4 50143510 50143610 -105486510 + ORR1A2 LTR MaLR 1 106 -240 2 967 357 254 199 38 chr4 50143784 50144038 -105486082 - RLTR10A LTR ERVK 0 411 117 2 967 1987 299 46 47 chr4 50144050 50146539 -105483581 - IAP-d-int LTR ERVK -202 7042 3268 2 967 344 274 46 46 chr4 50146586 50146739 -105483381 - IAP-d-int LTR ERVK -4149 2393 2241 2 967 262 200 75 32 chr4 50146877 50146970 -105483150 - IAP-d-int LTR ERVK -6389 153 57 2 967 368 208 45 54 chr4 50147003 50147115 -105483005 - RLTR10-int LTR ERVK -1559 428 318 2 967 376 259 215 13 chr4 50147131 50147357 -105482763 - RLTR10A LTR ERVK 0 411 140 2 967 604 310 70 5 chr4 50148291 50148505 -105481615 - MER2 DNA MER2_type -14 331 104 2 967 490 285 34 20 chr4 50148563 50148710 -105481410 - B1F SINE Alu 0 149 1 2 967 824 225 84 28 chr4 50148928 50149143 -105480977 + ORR1A4 LTR MaLR 1 227 -102 2 967 856 180 27 0 chr4 50149149 50149299 -105480821 - Lx7 LINE L1 -718 6978 6825 2 967 14763 183 65 37 chr4 50149309 50149537 -105480583 - L1_Mur3 LINE L1 -1028 4852 4630 2 967 222 0 25 50 chr4 50149537 50149577 -105480543 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 967 14763 183 65 37 chr4 50149577 50150487 -105479633 - L1_Mur3 LINE L1 -1251 4629 3666 2 967 780 11 0 0 chr4 50150487 50150576 -105479544 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 2 967 1159 64 0 0 chr4 50150577 50150718 -105479402 - B1_Mus2 SINE Alu -6 141 1 2 967 14763 183 65 37 chr4 50150718 50151031 -105479089 - L1_Mur3 LINE L1 -2215 3665 3359 2 967 226 0 0 56 chr4 50151031 50151067 -105479053 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 967 14763 183 65 37 chr4 50151067 50151169 -105478951 - L1_Mur3 LINE L1 -2522 3358 3264 2 967 1149 75 7 0 chr4 50151169 50151315 -105478805 - B1_Mus2 SINE Alu 0 147 1 2 967 14763 183 65 37 chr4 50151315 50152502 -105477618 - L1_Mur3 LINE L1 -2617 3263 2060 2 967 414 0 0 0 chr4 50152502 50152548 -105477572 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 967 14763 184 65 33 chr4 50152548 50153543 -105476577 - L1_Mur3 LINE L1 -3821 2059 1006 2 967 221 225 0 0 chr4 50153718 50153758 -105476362 + polypyrimidine Low_complexity Low_complexity 1 40 0 2 967 865 91 106 0 chr4 50153937 50154127 -105475993 + L1Md_F2 LINE L1 6418 6582 0 2 967 1173 63 0 0 chr4 50154204 50154346 -105475774 + B1_Mus2 SINE Alu 1 142 -5 2 967 3113 199 76 6 chr4 50154365 50155049 -105475071 - L1_Mur3 LINE L1 -6707 1021 290 2 967 3517 140 28 3 chr4 50155431 50156004 -105474116 - Lx2 LINE L1 -7 6990 6404 2 967 990 86 46 0 chr4 50156015 50156167 -105473953 - L1_Mus2 LINE L1 0 6566 6408 2 967 251 54 27 0 chr4 50157972 50158009 -105472111 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 967 303 381 78 26 chr4 50158009 50158241 -105471879 - B4A SINE B4 -30 262 19 2 967 207 220 0 0 chr4 50159149 50159199 -105470921 + GA-rich Low_complexity Low_complexity 1 50 0 2 967 29569 128 18 8 chr4 50159821 50162324 -105467796 + L1_Mus2 LINE L1 667 3175 -2708 2 967 219 36 0 0 chr4 50162324 50162352 -105467768 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 967 29569 108 12 6 chr4 50162352 50165652 -105464468 + L1_Mus2 LINE L1 3176 6518 -48 2 967 357 226 18 45 chr4 50165752 50165863 -105464257 + Lx9 LINE L1 7333 7440 -204 2 967 354 23 0 0 chr4 50165884 50165927 -105464193 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 967 519 17 0 0 chr4 50165927 50165986 -105464134 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 967 43 20 0 0 chr4 50166045 50166095 -105464025 + AT_rich Low_complexity Low_complexity 1 50 0 2 967 3533 68 62 0 chr4 50166222 50166690 -105463430 - L1Md_F2 LINE L1 -19 6563 6067 2 967 871 153 39 22 chr4 50166692 50166873 -105463247 - B2_Mm2 SINE B2 -9 186 3 2 967 352 296 220 14 chr4 50167237 50167328 -105462792 - L1MC4 LINE L1 -400 7642 7531 2 967 288 0 0 0 chr4 50167328 50167360 -105462760 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 967 352 296 220 14 chr4 50167360 50167614 -105462506 - L1MC4 LINE L1 -512 7530 7228 2 967 199 275 129 21 chr4 50168325 50168418 -105461702 + MIRb SINE MIR 148 250 -18 2 967 242 371 0 33 chr4 50168527 50168619 -105461501 - L2b LINE L2 -34 3341 3253 2 967 261 0 0 0 chr4 50168661 50168690 -105461430 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 967 2337 108 34 26 chr4 50168690 50169071 -105461049 - L1Md_F2 LINE L1 0 6582 6199 2 967 18534 88 38 7 chr4 50169071 50171783 -105458337 - L1_Mm LINE L1 -1419 4464 1669 2 967 300 346 79 42 chr4 50171860 50172074 -105458046 - L1ME3B LINE L1 -136 6104 5883 2 967 270 261 31 0 chr4 50172298 50172363 -105457757 - B3A SINE B2 -127 71 5 2 967 22 0 0 0 chr4 50173334 50173356 -105456764 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 822 113 0 0 chr4 50174261 50174385 -105455735 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 2 967 306 362 102 24 chr4 50174621 50174867 -105455253 - MLT1D LTR MaLR -125 380 116 2 967 23 33 0 0 chr4 50174996 50175026 -105455094 + AT_rich Low_complexity Low_complexity 1 30 0 2 967 1243 302 74 42 chr4 50175570 50176093 -105454027 - Lx6 LINE L1 -56 7404 6483 2 967 2988 193 49 9 chr4 50176079 50177062 -105453058 - Lx6 LINE L1 -628 6372 5310 2 967 2905 166 15 97 chr4 50177060 50177774 -105452346 - Lx6 LINE L1 -1952 3928 3273 2 967 2129 107 6 19 chr4 50177774 50178088 -105452032 + RLTR19 LTR ERVK 1 310 -189 2 967 1054 218 72 27 chr4 50178180 50178473 -105451647 - RMER6C LTR ERVK -37 653 348 2 967 269 173 0 103 chr4 50178499 50178557 -105451563 - PB1D9 SINE Alu -66 54 3 2 967 491 185 16 136 chr4 50178557 50178648 -105451472 - MT2B LTR ERVL -343 258 183 2 967 259 242 130 50 chr4 50178569 50178669 -105451451 - B1_Mur4 SINE Alu -40 110 3 2 967 35453 42 1 9 chr4 50178670 50183844 -105446276 + L1Md_T LINE L1 456 5586 -297 2 967 8295 36 1 1 chr4 50183845 50184839 -105445281 + L1Md_T LINE L1 5588 6581 -1 2 967 307 77 0 0 chr4 50184963 50185002 -105445118 - RMER6D LTR ERVK -681 39 1 2 967 588 257 13 83 chr4 50185004 50185161 -105444959 - Lx5 LINE L1 -89 6961 6816 2 967 818 219 0 0 chr4 50185167 50185322 -105444798 + Lx5 LINE L1 6364 6518 -532 2 967 4539 223 42 19 chr4 50185346 50186264 -105443856 - Lx6 LINE L1 -2874 3003 2056 2 967 369 93 0 0 chr4 50186264 50186318 -105443802 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 967 639 0 0 0 chr4 50186318 50186388 -105443732 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 967 4539 233 32 96 chr4 50186388 50187920 -105442200 - Lx6 LINE L1 -3826 2060 892 2 967 418 349 28 34 chr4 50188556 50188734 -105441386 + MER5B DNA MER1_type 2 178 0 2 967 826 304 62 108 chr4 50190003 50190468 -105439652 - MER67D LTR ERV1 -64 450 7 2 967 327 303 11 0 chr4 50191272 50191361 -105438759 + MT2A LTR ERVL 1 90 -443 2 967 4715 106 57 1 chr4 50191366 50192084 -105438036 - Lx3_Mus LINE L1 -1 7008 6251 2 967 5553 78 5 1 chr4 50192084 50192853 -105437267 + L1_Mur1 LINE L1 3748 4519 -1367 2 967 22 0 0 0 chr4 50192863 50192885 -105437235 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 693 261 119 5 chr4 50192913 50193098 -105437022 + MT2A LTR ERVL 95 300 -233 2 967 216 67 0 0 chr4 50193106 50193136 -105436984 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 967 4995 104 15 93 chr4 50193806 50194484 -105435636 + L1_Mur2 LINE L1 2617 3293 -2584 2 967 1881 52 4 20 chr4 50194484 50194739 -105435381 + L1_Mus2 LINE L1 6316 6566 0 2 967 4995 104 15 93 chr4 50194739 50194991 -105435129 + L1_Mur2 LINE L1 3294 3474 -2403 2 967 643 113 104 0 chr4 50194983 50195089 -105435031 + L1VL2 LINE L1 110 226 -6109 2 967 10607 143 76 54 chr4 50195089 50196971 -105433149 + L1VL2 LINE L1 308 2302 -3581 2 967 1015 121 23 0 chr4 50196971 50197145 -105432975 + (TTTTC)n Simple_repeat Simple_repeat 2 179 0 2 967 10607 171 22 104 chr4 50197145 50198809 -105431311 + L1VL2 LINE L1 2303 3744 -2139 2 967 4931 153 57 19 chr4 50198814 50199679 -105430441 + Lx4A LINE L1 6160 7057 -1 2 968 264 289 11 11 chr4 50201096 50201187 -105428933 + (CATATA)n Simple_repeat Simple_repeat 5 95 0 2 968 300 217 33 0 chr4 50202189 50202249 -105427871 + L1MEg LINE L1 1882 1943 -4141 2 968 211 216 19 19 chr4 50202334 50202386 -105427734 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 968 205 162 0 0 chr4 50202578 50202615 -105427505 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 968 223 300 43 0 chr4 50202770 50202840 -105427280 + ID4 SINE ID 2 74 -9 2 968 1708 153 114 12 chr4 50203335 50203659 -105426461 - ORR1B2 LTR MaLR -8 359 3 2 968 41120 5 0 0 chr4 50203894 50210262 -105419858 - L1Md_A LINE L1 0 6582 214 2 968 7585 89 8 11 chr4 50211322 50212602 -105417518 - L1_Mus4 LINE L1 -1 6635 5360 2 968 3468 119 88 4 chr4 50212935 50213489 -105416631 + MT2B LTR ERVL 1 601 0 2 968 1289 227 17 67 chr4 50213653 50213998 -105416122 - MT2B LTR ERVL 0 601 274 2 968 260 233 182 23 chr4 50214063 50214151 -105415969 - MT2B LTR ERVL -431 102 1 2 968 1505 228 116 8 chr4 50214247 50214619 -105415501 - MTC LTR MaLR -8 413 2 2 968 296 275 24 24 chr4 50214853 50214935 -105415185 - ID4_ SINE ID 0 83 2 2 968 5323 70 19 0 chr4 50215053 50215752 -105414368 - L1_Mus2 LINE L1 -2 6564 5853 2 968 185 356 45 22 chr4 50216603 50216692 -105413428 - MER5A DNA MER1_type -3 186 96 2 968 354 268 46 72 chr4 50217037 50217190 -105412930 - B1F2 SINE Alu 0 149 1 2 968 398 69 0 17 chr4 50218123 50218182 -105411938 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 968 257 148 35 58 chr4 50218467 50218553 -105411567 + G-rich Low_complexity Low_complexity 1 84 0 2 968 1064 332 33 3 chr4 50218765 50219133 -105410987 - MTE2b LTR MaLR 0 379 1 2 968 1817 73 35 0 chr4 50219889 50220149 -105409971 + MusHAL1 LINE L1 105 373 -2339 2 968 4793 101 36 1 chr4 50220149 50220874 -105409246 + MusHAL1 LINE L1 1060 1809 -903 2 968 2836 187 55 193 chr4 50220865 50221360 -105408760 + Lx LINE L1 5043 5356 -521 2 968 594 0 0 0 chr4 50221360 50221426 -105408694 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 968 6267 140 59 38 chr4 50221426 50222646 -105407474 + Lx LINE L1 5357 6637 -17 2 968 221 0 35 0 chr4 50222647 50222676 -105407444 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2 968 222 171 0 0 chr4 50222728 50222769 -105407351 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 968 259 240 60 37 chr4 50223124 50223247 -105406873 - Lx9 LINE L1 -32 7612 7486 2 968 3870 33 2 2 chr4 50223247 50223709 -105406411 - L1Md_T LINE L1 -2 6580 6119 2 968 365 267 25 8 chr4 50224326 50224447 -105405673 + L1M5 LINE L1 5566 5688 -436 2 968 2271 245 56 4 chr4 50224598 50225119 -105405001 - Lx6 LINE L1 0 7460 6913 2 968 2569 165 204 0 chr4 50225675 50225951 -105404169 - RMER6C LTR ERVK 0 690 388 2 968 249 33 0 0 chr4 50225951 50225981 -105404139 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 968 2569 165 204 0 chr4 50225981 50226273 -105403847 - RMER6C LTR ERVK -303 387 8 2 968 23 0 0 0 chr4 50226893 50226916 -105403204 + AT_rich Low_complexity Low_complexity 1 23 0 2 968 297 110 104 52 chr4 50227278 50227355 -105402765 + Lx3_Mus LINE L1 6929 7009 0 2 968 477 107 0 0 chr4 50227370 50227445 -105402675 + Lx2 LINE L1 6922 6996 -1 3 968 2269 90 145 13 chr4 50228783 50228950 -105401170 - BGLII LTR ERVK 0 421 246 3 968 1021 72 12 29 chr4 50228950 50229122 -105400998 + (TTC)n Simple_repeat Simple_repeat 3 171 0 3 968 2269 90 145 13 chr4 50229122 50229326 -105400794 - BGLII LTR ERVK -176 245 1 3 968 22 70 0 0 chr4 50229879 50229922 -105400198 + AT_rich Low_complexity Low_complexity 1 43 0 3 968 601 270 108 31 chr4 50230179 50230630 -105399490 + L1MC1 LINE L1 5063 5536 -2249 3 968 1579 97 4 4 chr4 50230630 50230859 -105399261 + L1_Mus2 LINE L1 6337 6565 -1 3 968 745 295 124 15 chr4 50230859 50231333 -105398787 + L1MC1 LINE L1 5537 6095 -238 3 968 338 320 97 16 chr4 50231340 50231464 -105398656 + MTE2a LTR MaLR 1 134 -245 3 968 897 321 51 27 chr4 50231373 50231748 -105398372 + MT2A LTR ERVL 45 428 -105 3 968 443 87 0 14 chr4 50231872 50231942 -105398178 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 968 528 313 80 15 chr4 50231974 50232175 -105397945 + L1MC1 LINE L1 6099 6312 -21 3 968 3456 201 103 20 chr4 50232522 50232534 -105397586 - Lx4B LINE L1 -1 7057 7044 3 968 189 0 0 0 chr4 50232534 50232555 -105397565 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 3 968 3456 201 103 20 chr4 50232555 50233350 -105396770 - Lx4B LINE L1 -15 7043 6184 3 968 344 235 67 0 chr4 50233391 50233510 -105396610 - Lx9 LINE L1 -7 7637 7511 3 968 201 39 0 0 chr4 50233510 50233536 -105396584 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 968 2109 189 48 78 chr4 50233536 50233996 -105396124 - RLTR41 LTR ERV1 0 446 1 3 968 1617 201 37 14 chr4 50234091 50234440 -105395680 + Lx9 LINE L1 6811 7167 -477 3 968 843 10 0 0 chr4 50234755 50234851 -105395269 + (TTCCC)n Simple_repeat Simple_repeat 4 99 0 3 968 200 111 28 0 chr4 50234851 50234887 -105395233 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 3 968 1045 122 0 0 chr4 50235308 50235455 -105394665 + B1_Mus1 SINE Alu 2 148 0 3 968 364 283 36 45 chr4 50236126 50236237 -105393883 - MLT1A LTR MaLR -261 113 4 3 968 22 0 0 0 chr4 50236659 50236681 -105393439 + AT_rich Low_complexity Low_complexity 1 22 0 3 968 180 0 0 0 chr4 50236718 50236738 -105393382 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 968 4606 124 67 26 chr4 50236793 50237553 -105392567 + L1VL2 LINE L1 65 855 -5480 3 968 512 318 95 36 chr4 50237796 50238321 -105391799 - L1_Mur3 LINE L1 -3083 2797 2242 3 968 21 36 0 0 chr4 50238521 50238549 -105391571 + AT_rich Low_complexity Low_complexity 1 28 0 3 968 265 39 0 56 chr4 50238564 50238618 -105391502 - L1_Mus1 LINE L1 0 6567 6523 3 968 22 0 0 0 chr4 50238720 50238742 -105391378 + AT_rich Low_complexity Low_complexity 1 22 0 3 968 477 0 0 0 chr4 50239322 50239375 -105390745 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 968 290 384 43 21 chr4 50239389 50239530 -105390590 + RSINE1 SINE B4 2 145 -20 3 968 21 0 0 0 chr4 50239570 50239591 -105390529 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 240 86 0 0 chr4 50239707 50239742 -105390378 + Lx LINE L1 6305 6339 -315 3 968 370 275 191 32 chr4 50240638 50240890 -105389230 - L1M5 LINE L1 -2841 3305 3014 3 968 21 0 0 0 chr4 50241046 50241067 -105389053 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 7821 59 3 5 chr4 50241904 50243048 -105387072 - L1Md_F2 LINE L1 -10 6572 5432 3 968 543 45 33 11 chr4 50243070 50243161 -105386959 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 3 968 207 69 0 0 chr4 50243356 50243385 -105386735 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 968 21 57 0 0 chr4 50244152 50244187 -105385933 + AT_rich Low_complexity Low_complexity 1 35 0 3 968 629 324 17 21 chr4 50244689 50244976 -105385144 - B4A SINE B4 -4 288 3 3 968 214 276 52 0 chr4 50244981 50245039 -105385081 - ID_B1 SINE B4 -70 154 94 3 968 1625 211 62 6 chr4 50245254 50245612 -105384508 + Lx2B LINE L1 6349 6726 -274 3 968 329 319 106 32 chr4 50246143 50246425 -105383695 - LTR81B LTR ERV1? -1074 319 17 3 968 221 303 91 0 chr4 50246534 50246600 -105383520 - PB1D10 SINE Alu -45 72 1 3 968 282 369 201 39 chr4 50247641 50248030 -105382090 + MLT1J LTR MaLR 16 467 -45 3 968 198 331 278 0 chr4 50248714 50248865 -105381255 + MIRb SINE MIR 3 195 -73 3 968 258 350 42 8 chr4 50248967 50249085 -105381035 - LTR16E1 LTR ERVL -6 532 411 3 968 414 0 0 0 chr4 50249433 50249479 -105380641 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 968 247 337 85 80 chr4 50249765 50250129 -105379991 + ORR1D1 LTR MaLR 9 374 0 3 968 2966 77 14 9 chr4 50250242 50250661 -105379459 + BGLII LTR ERVK 1 421 0 3 968 3629 26 9 0 chr4 50250815 50251244 -105378876 + L1Md_F3 LINE L1 6138 6570 -14 3 968 216 0 0 0 chr4 50251274 50251298 -105378822 + (A)n Simple_repeat Simple_repeat 1 24 0 3 968 21 0 0 0 chr4 50251518 50251539 -105378581 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 229 354 122 39 chr4 50252080 50252491 -105377629 + L2 LINE L2 2620 3064 -355 3 968 237 269 0 0 chr4 50252785 50252852 -105377268 - L1MA10 LINE L1 -67 6267 6201 3 968 811 248 44 19 chr4 50252962 50253168 -105376952 - B3 SINE B2 0 216 6 3 968 287 351 15 89 chr4 50253283 50253486 -105376634 - Lx9 LINE L1 -1094 6550 6363 3 968 1851 301 88 64 chr4 50253785 50254837 -105375283 + Lx9 LINE L1 6546 7623 -21 3 968 541 278 85 64 chr4 50254893 50255235 -105374885 - L1M5 LINE L1 -361 5818 5470 3 968 907 298 0 0 chr4 50255369 50255574 -105374546 - B3 SINE B2 -1 215 11 3 968 292 265 32 128 chr4 50255597 50255753 -105374367 - MTEb LTR MaLR -41 338 198 3 968 2752 55 0 3 chr4 50256761 50257105 -105373015 - L1_Mus1 LINE L1 0 6567 6225 3 968 2217 225 99 6 chr4 50257150 50257665 -105372455 - Lx5 LINE L1 -5 7045 6483 3 968 559 110 0 0 chr4 50257660 50257742 -105372378 - Lx4B LINE L1 -124 6934 6853 3 968 2221 193 12 23 chr4 50257744 50258173 -105371947 - Lx5 LINE L1 -420 6630 6207 3 968 7254 178 42 43 chr4 50258171 50260284 -105369836 - L1_Mur2 LINE L1 -2875 3002 896 3 968 524 252 10 0 chr4 50262571 50262674 -105367446 + URR1A DNA MER1_type 6 109 -117 3 968 474 150 0 0 chr4 50262673 50262753 -105367367 - B2_Mm2 SINE B2 -115 80 1 3 968 728 154 8 0 chr4 50262753 50262883 -105367237 + URR1A DNA MER1_type 92 222 -4 3 968 475 228 35 42 chr4 50262758 50262900 -105367220 - CYRA11_Mm Unknown Y-chromosome -317 300 160 3 968 2806 112 40 90 chr4 50262962 50263483 -105366637 + RLTR1C LTR ERV1 1 495 -8 3 968 2349 170 3 4 chr4 50264111 50264641 -105365479 + L1VL4 LINE L1 526 1053 -2506 3 968 767 289 72 72 chr4 50265047 50265402 -105364718 - MTEb LTR MaLR -7 372 1 3 968 492 258 37 102 chr4 50267343 50267498 -105362622 + MTE2b LTR MaLR 176 312 -67 3 968 182 62 31 0 chr4 50267498 50267530 -105362590 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 968 492 258 37 102 chr4 50267530 50267590 -105362530 + MTE2b LTR MaLR 313 376 -3 3 968 750 296 50 14 chr4 50267718 50267937 -105362183 - MTEb LTR MaLR -17 362 136 3 968 202 143 24 0 chr4 50268737 50268779 -105361341 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 3 968 1619 161 106 48 chr4 50269635 50269773 -105360347 + RLTR30 LTR ERV1 1 155 -224 3 968 365 86 0 17 chr4 50269773 50269832 -105360288 + (CAAG)n Simple_repeat Simple_repeat 3 60 0 3 968 1619 161 106 48 chr4 50269832 50270051 -105360069 + RLTR30 LTR ERV1 156 378 -1 3 968 582 114 0 0 chr4 50270879 50270967 -105359153 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 3 968 235 308 64 18 chr4 50271529 50271638 -105358482 - B1F SINE Alu -23 126 13 3 968 397 385 35 70 chr4 50271880 50272109 -105358011 + MLT1F LTR MaLR 11 231 -317 3 968 631 308 100 35 chr4 50272118 50272406 -105357714 - MLT1A0 LTR MaLR -6 359 53 3 968 334 266 122 66 chr4 50272406 50272457 -105357663 - MT2A LTR ERVL 0 533 466 3 968 396 0 0 0 chr4 50272457 50272501 -105357619 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 968 334 266 122 66 chr4 50272501 50272630 -105357490 - MT2A LTR ERVL -68 465 343 3 968 4215 75 11 3 chr4 50273432 50274005 -105356115 - L1_Mus1 LINE L1 0 6567 5991 3 968 6322 107 38 13 chr4 50275631 50276616 -105353504 + Lx3_Mus LINE L1 5992 7000 -9 3 968 570 301 7 15 chr4 50276839 50276974 -105353146 + RSINE1 SINE B4 3 136 -29 3 968 399 21 0 0 chr4 50276981 50277029 -105353091 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 968 198 0 0 0 chr4 50277029 50277050 -105353070 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 968 301 317 0 96 chr4 50277280 50277395 -105352725 - ID_B1 SINE B4 -35 189 86 3 968 363 60 0 0 chr4 50277714 50277764 -105352356 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 968 7514 64 16 1 chr4 50277764 50278899 -105351221 - L1Md_F2 LINE L1 -18 6564 5409 3 968 8086 76 12 20 chr4 50278898 50279854 -105350266 + L1_Mm LINE L1 4280 5231 -652 3 968 585 0 0 0 chr4 50279854 50279919 -105350201 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 968 8086 76 12 20 chr4 50279919 50280102 -105350018 + L1_Mm LINE L1 5232 5410 -473 3 968 1086 292 86 23 chr4 50280750 50281100 -105349020 + ORR1D1 LTR MaLR 3 374 0 3 968 31 0 0 0 chr4 50281737 50281768 -105348352 + AT_rich Low_complexity Low_complexity 1 31 0 3 968 1575 282 72 120 chr4 50282040 50283170 -105346950 - Lx9 LINE L1 -9 7635 6561 3 968 227 290 56 42 chr4 50283220 50283364 -105346756 + L1M2 LINE L1 5527 5672 -628 3 968 418 284 17 25 chr4 50283539 50283658 -105346462 - Lx9 LINE L1 -1072 6572 6455 3 968 1028 236 92 8 chr4 50284155 50284416 -105345704 - Lx6 LINE L1 -567 6893 6611 3 968 6388 175 42 24 chr4 50284488 50286627 -105343493 - Lx4B LINE L1 0 7000 4798 3 968 501 92 0 0 chr4 50286627 50286703 -105343417 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 968 6388 153 37 37 chr4 50286703 50286895 -105343225 - Lx4B LINE L1 -1080 4797 4644 3 968 1170 226 31 12 chr4 50286889 50287144 -105342976 + Lx6 LINE L1 7190 7449 -11 3 968 209 246 18 0 chr4 50287189 50287246 -105342874 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 968 22 35 0 0 chr4 50287364 50287393 -105342727 + AT_rich Low_complexity Low_complexity 1 29 0 4 968 1048 76 9 7 chr4 50287815 50287979 -105342141 + L1Md_F2 LINE L1 751 942 -5782 4 968 21224 88 4 1 chr4 50287978 50290947 -105339173 + L1Md_F2 LINE L1 2609 5585 -298 4 968 7300 63 13 36 chr4 50290948 50291955 -105338165 + L1Md_F2 LINE L1 5587 6570 -12 4 968 5372 124 34 44 chr4 50292049 50293013 -105337107 + MurERV4_19-int LTR ERVK 4278 5232 -548 4 968 282 206 68 0 chr4 50293007 50293080 -105337040 + MurERV4_19-int LTR ERVK 5187 5264 -516 4 968 245 316 147 0 chr4 50294227 50294363 -105335757 - MLT1D LTR MaLR -327 178 23 4 968 622 365 72 57 chr4 50294991 50295433 -105334687 - MLT1E3 LTR MaLR -92 532 84 4 968 1078 102 0 0 chr4 50296610 50296757 -105333363 + B1_Mus1 SINE Alu 1 147 -1 4 968 22 103 0 0 chr4 50296909 50296987 -105333133 + AT_rich Low_complexity Low_complexity 1 78 0 4 968 202 164 36 0 chr4 50297052 50297107 -105333013 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 968 296 197 0 0 chr4 50297107 50297173 -105332947 + Lx9 LINE L1 7407 7472 -172 4 968 1768 156 10 10 chr4 50297569 50297874 -105332246 + Lx4A LINE L1 6752 7056 -2 4 968 21 0 0 0 chr4 50297875 50297896 -105332224 + AT_rich Low_complexity Low_complexity 1 21 0 4 968 426 331 105 12 chr4 50298025 50298196 -105331924 + B4 SINE B4 6 192 -100 4 968 1231 216 65 34 chr4 50298223 50298437 -105331683 + Lx9 LINE L1 6444 6660 -984 4 968 641 13 13 0 chr4 50298437 50298515 -105331605 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 968 1231 216 65 34 chr4 50298515 50298592 -105331528 + Lx9 LINE L1 6661 6743 -901 4 968 306 294 98 49 chr4 50298770 50298913 -105331207 + Lx6 LINE L1 6612 6761 -699 4 968 2337 246 150 67 chr4 50300188 50301127 -105328993 + RMER1A Other Other 26 1061 -5 4 968 454 165 19 0 chr4 50302906 50303009 -105327111 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 968 573 28 0 0 chr4 50303009 50303080 -105327040 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 4 968 267 274 0 0 chr4 50303136 50303187 -105326933 - ID4_ SINE ID -31 52 2 4 968 324 331 32 84 chr4 50305034 50305189 -105324931 - RSINE1 SINE B4 0 165 19 4 968 390 200 280 28 chr4 50305782 50305895 -105324225 - Lx9 LINE L1 0 7644 7515 4 968 348 43 0 0 chr4 50305895 50305941 -105324179 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 968 390 200 280 28 chr4 50305941 50305997 -105324123 - Lx9 LINE L1 -130 7514 7420 4 968 456 19 0 0 chr4 50305997 50306050 -105324070 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 968 390 200 280 28 chr4 50306050 50306090 -105324030 - Lx9 LINE L1 -225 7419 7382 4 968 2002 225 17 10 chr4 50306094 50306175 -105323945 - MTC LTR MaLR 0 421 339 4 968 3432 80 4 2 chr4 50306175 50306638 -105323482 - L1_Mus3 LINE L1 -2 6636 6173 4 968 2002 225 17 10 chr4 50306638 50306974 -105323146 - MTC LTR MaLR -83 338 1 4 968 7034 143 35 9 chr4 50307859 50309950 -105320170 - Lx LINE L1 -6 6648 4501 4 968 29593 117 8 6 chr4 50310115 50315638 -105314482 - L1_Mus1 LINE L1 0 6567 1110 4 968 982 116 0 0 chr4 50315638 50315776 -105314344 - B1_Mm SINE Alu -9 138 1 4 968 3815 186 45 122 chr4 50315776 50316663 -105313457 - L1_Mus1 LINE L1 -5507 1109 212 4 968 252 208 19 19 chr4 50317093 50317147 -105312973 - 4.5SRNA scRNA scRNA -3 91 38 4 968 424 224 0 0 chr4 50317100 50317176 -105312944 - B1_Mus2 SINE Alu -61 86 11 4 968 223 246 35 0 chr4 50317509 50317566 -105312554 + L3 LINE CR1 745 803 -3686 4 968 21 36 0 0 chr4 50318298 50318326 -105311794 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 21 36 0 0 chr4 50320197 50320225 -105309895 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 4321 178 5 160 chr4 50320297 50320880 -105309240 - L1_Mur2 LINE L1 -337 5540 4984 4 968 1523 61 0 0 chr4 50320880 50321076 -105309044 - L1_Mus1 LINE L1 -1 6566 6371 4 968 4321 178 5 160 chr4 50321076 50321654 -105308466 - L1_Mur2 LINE L1 -894 4983 4572 4 968 2802 70 49 0 chr4 50321654 50322024 -105308096 - RLTR10 LTR ERVK -2 388 1 4 968 4321 178 5 160 chr4 50322024 50322108 -105308012 - L1_Mur2 LINE L1 -1306 4571 4488 4 968 2052 220 29 15 chr4 50322098 50322594 -105307526 + Lx2B LINE L1 6415 7016 -42 4 968 34 24 0 0 chr4 50322610 50322651 -105307469 + AT_rich Low_complexity Low_complexity 1 41 0 4 968 305 360 45 0 chr4 50323398 50323509 -105306611 - MLT1C LTR MaLR -4 463 348 4 968 3881 243 61 36 chr4 50324902 50325942 -105304178 - Lx5 LINE L1 0 7050 5986 4 968 10783 167 19 9 chr4 50325935 50328034 -105302086 - L1_Mur2 LINE L1 -1467 4410 2290 4 968 4608 178 11 18 chr4 50328032 50328909 -105301211 - L1_Mm LINE L1 -100 5783 4913 4 968 8031 1 0 0 chr4 50328909 50329796 -105300324 - L1Md_A LINE L1 0 6582 5696 4 968 3199 155 7 35 chr4 50329794 50330396 -105299724 - L1_Mur2 LINE L1 -969 4908 4324 4 968 807 191 0 0 chr4 50330392 50330539 -105299581 + Lx LINE L1 5833 5979 -675 4 968 1835 177 21 0 chr4 50330540 50330867 -105299253 + Lx2B LINE L1 6664 6997 -3 4 1 1883 219 60 19 chr4 50331175 50331688 -105298432 + Lx9 LINE L1 7108 7641 -3 4 969 324 0 0 0 chr4 50332014 50332050 -105298070 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 969 2533 114 56 39 chr4 50332671 50333138 -105296982 - IAPLTR2_Mm LTR ERVK 0 475 1 4 969 789 147 217 17 chr4 50333413 50333593 -105296527 + B3 SINE B2 1 216 0 4 969 377 304 95 19 chr4 50333598 50333809 -105296311 + Lx8 LINE L1 6896 7122 -351 4 969 2214 112 3 3 chr4 50335107 50335430 -105294690 - ORR1A3 LTR MaLR -3 323 1 4 969 329 271 28 9 chr4 50335626 50335734 -105294386 + CT-rich Low_complexity Low_complexity 4 113 0 4 969 1130 330 16 34 chr4 50335876 50336457 -105293663 + Lx9 LINE L1 6624 7193 -451 4 969 216 0 0 0 chr4 50336529 50336553 -105293567 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 969 261 320 88 0 chr4 50336553 50336700 -105293420 + Lx9 LINE L1 7321 7480 -164 4 969 230 256 72 0 chr4 50336837 50336962 -105293158 + ORR1B1-int LTR MaLR 621 754 -755 4 969 850 167 7 7 chr4 50336859 50336998 -105293122 + B1_Mus2 SINE Alu 6 144 -3 4 969 216 48 71 0 chr4 50337367 50337409 -105292711 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 969 518 303 8 0 chr4 50337890 50338022 -105292098 + B3A SINE B2 1 133 -65 4 969 462 18 0 0 chr4 50338053 50338108 -105292012 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 969 243 306 60 51 chr4 50338171 50338288 -105291832 + RSINE1 SINE B4 42 159 -6 4 969 21 0 0 0 chr4 50338465 50338486 -105291634 + AT_rich Low_complexity Low_complexity 1 21 0 4 969 4280 134 16 3 chr4 50339750 50340421 -105289699 + Lx3B LINE L1 6291 6970 -3 4 969 11797 21 5 0 chr4 50340449 50342161 -105287959 - L1Md_T LINE L1 -423 6159 4442 4 969 3329 33 28 0 chr4 50342161 50342558 -105287562 + L1Md_T LINE L1 6163 6570 -12 4 969 704 315 146 16 chr4 50343001 50343317 -105286803 - MTE2b LTR MaLR -13 366 10 4 969 385 284 57 63 chr4 50343390 50343411 -105286709 + ID_B1 SINE B4 68 223 0 4 969 813 100 73 44 chr4 50343411 50343547 -105286573 + B1_Mus2 SINE Alu 8 147 0 4 969 213 94 0 0 chr4 50343739 50343771 -105286349 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 969 21 57 0 0 chr4 50344065 50344100 -105286020 + AT_rich Low_complexity Low_complexity 1 35 0 4 969 379 304 92 22 chr4 50344655 50344971 -105285149 - L1ME1 LINE L1 -240 5939 5602 4 969 195 69 0 0 chr4 50344982 50345011 -105285109 + (A)n Simple_repeat Simple_repeat 1 29 0 4 969 27 49 0 0 chr4 50345716 50345757 -105284363 + AT_rich Low_complexity Low_complexity 1 41 0 4 969 288 301 11 11 chr4 50346095 50346189 -105283931 + CT-rich Low_complexity Low_complexity 2 95 0 4 969 332 202 12 37 chr4 50346838 50346920 -105283200 - MLT1E1A LTR MaLR 0 680 601 4 969 312 70 0 0 chr4 50347253 50347296 -105282824 + (TATG)n Simple_repeat Simple_repeat 1 43 0 4 969 182 37 0 36 chr4 50347574 50347602 -105282518 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 969 240 183 33 0 chr4 50349019 50349079 -105281041 + T-rich Low_complexity Low_complexity 2 63 0 4 969 621 220 65 60 chr4 50349098 50349119 -105281001 - RMER10A LTR ERVL -7 435 412 4 969 186 43 0 0 chr4 50349119 50349142 -105280978 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 4 969 621 220 65 60 chr4 50349142 50349304 -105280816 - RMER10A LTR ERVL -31 411 251 4 969 2150 202 29 18 chr4 50349306 50349794 -105280326 + RLTR11A2 LTR ERVK 1 493 -34 4 969 803 202 0 5 chr4 50349797 50349986 -105280134 + MYSERV-int LTR ERVK 6302 6489 -61 4 969 931 183 72 86 chr4 50350040 50350055 -105280065 - RMER10A LTR ERVL -172 270 256 4 969 2301 228 25 19 chr4 50350055 50350579 -105279541 + RLTR11A2 LTR ERVK 1 527 0 4 969 931 183 72 86 chr4 50350579 50350784 -105279336 - RMER10A LTR ERVL -187 255 54 4 969 444 293 0 43 chr4 50351399 50351538 -105278582 - ORR1C1 LTR MaLR -2 377 245 4 969 4303 95 0 22 chr4 50351548 50352148 -105277972 - LTRIS_Mus LTR ERV1 0 587 1 4 969 1753 304 10 29 chr4 50352148 50352935 -105277185 - MuRRS-int LTR ERV1 0 7778 7007 4 969 10874 240 36 31 chr4 50353688 50358844 -105271276 - MuRRS-int LTR ERV1 -1978 5800 348 4 969 747 52 0 0 chr4 50358844 50358940 -105271180 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 969 5266 259 48 50 chr4 50358940 50359301 -105270819 - MuRRS-int LTR ERV1 -4716 347 5 4 969 4234 87 2 27 chr4 50359302 50359904 -105270216 - LTRIS_Mus LTR ERV1 0 587 1 4 969 739 334 54 52 chr4 50360145 50360473 -105269647 - Lx8 LINE L1 -153 7320 6990 4 969 7064 106 13 4 chr4 50360473 50361497 -105268623 - RLTR13D4 LTR ERVK 0 1033 1 4 969 739 334 54 52 chr4 50361497 50361778 -105268342 - Lx8 LINE L1 -484 6989 6710 4 969 315 277 12 35 chr4 50361779 50361865 -105268255 - ORR1C1 LTR MaLR -200 179 96 4 969 890 332 72 15 chr4 50362045 50362446 -105267674 + LTR80B LTR ERVL 9 432 -152 4 969 21 0 0 0 chr4 50363258 50363279 -105266841 + AT_rich Low_complexity Low_complexity 1 21 0 4 969 766 194 8 0 chr4 50363324 50363458 -105266662 - ORR1C1 LTR MaLR -243 135 1 4 969 350 267 7 7 chr4 50363512 50363648 -105266472 - L1M5 LINE L1 -990 5454 5319 4 969 243 325 50 39 chr4 50364176 50364435 -105265685 - L1M3 LINE L1 -1022 5118 4857 4 969 807 278 100 27 chr4 50364506 50364835 -105265285 + ORR1E LTR MaLR 1 353 -6 4 969 230 361 54 83 chr4 50365147 50365425 -105264695 - L3 LINE CR1 -369 4120 3851 4 969 255 31 0 0 chr4 50366829 50366861 -105263259 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 969 3083 171 32 25 chr4 50366868 50367467 -105262653 + Lx4A LINE L1 6456 7058 0 4 969 1131 69 14 0 chr4 50367614 50367758 -105262362 + B1_Mm SINE Alu 2 147 0 4 969 201 139 0 0 chr4 50367758 50367801 -105262319 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 4 969 529 16 0 0 chr4 50368495 50368558 -105261562 - L1_Mm LINE L1 -216 5667 5605 4 969 306 319 126 19 chr4 50369080 50369342 -105260778 + L1MC LINE L1 4258 4547 -1599 4 969 358 237 0 0 chr4 50369361 50369454 -105260666 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 4 969 820 0 20 0 chr4 50369454 50369554 -105260566 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 5 969 26 30 0 0 chr4 50369590 50369623 -105260497 + AT_rich Low_complexity Low_complexity 1 33 0 5 969 375 388 61 24 chr4 50369645 50370023 -105260097 + L1M5 LINE L1 5258 5649 -591 5 969 604 326 0 0 chr4 50370099 50370240 -105259880 + B3A SINE B2 2 142 -56 5 969 450 0 0 0 chr4 50370276 50370326 -105259794 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 969 826 268 4 39 chr4 50370562 50370818 -105259302 + Lx9 LINE L1 7188 7434 -210 5 969 333 0 0 0 chr4 50370821 50370858 -105259262 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 969 441 0 0 0 chr4 50370858 50370906 -105259214 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 5 969 1121 95 0 0 chr4 50371045 50371192 -105258928 + B1_Mus1 SINE Alu 1 147 -1 5 969 446 303 30 39 chr4 50371233 50371463 -105258657 - Lx6 LINE L1 -9 7451 7224 5 969 23 54 0 0 chr4 50371464 50371501 -105258619 + AT_rich Low_complexity Low_complexity 1 37 0 5 969 231 340 13 40 chr4 50371554 50371704 -105258416 - Lx6 LINE L1 -91 7369 7224 5 969 23 54 0 0 chr4 50371705 50371742 -105258378 + AT_rich Low_complexity Low_complexity 1 37 0 5 969 3163 264 34 114 chr4 50371819 50372030 -105258090 + Lx6 LINE L1 5875 6086 -1374 5 969 2047 148 18 111 chr4 50372030 50372121 -105257999 + ORR1B1 LTR MaLR 1 90 -304 5 969 923 127 0 0 chr4 50372121 50372255 -105257865 + B1_Mus1 SINE Alu 2 135 -13 5 969 769 92 0 14 chr4 50372255 50372399 -105257721 + (CAAAA)n Simple_repeat Simple_repeat 1 142 0 5 969 2047 148 18 111 chr4 50372399 50372740 -105257380 + ORR1B1 LTR MaLR 91 393 -1 5 969 3163 264 34 114 chr4 50372740 50373927 -105256193 + Lx6 LINE L1 6087 7162 -298 5 969 330 26 0 0 chr4 50373928 50373967 -105256153 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 969 886 319 67 3 chr4 50375953 50376339 -105253781 + Lx8 LINE L1 6213 6623 -850 5 969 1032 231 209 3 chr4 50376346 50376633 -105253487 + ORR1C1 LTR MaLR 1 346 -32 5 969 2695 135 38 7 chr4 50376636 50377060 -105253060 + Lx3B LINE L1 6534 6970 -3 5 969 351 113 0 0 chr4 50377065 50377118 -105253002 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 969 250 159 0 0 chr4 50377118 50377162 -105252958 + ORR1B2 LTR MaLR 269 312 -14 5 969 234 0 0 0 chr4 50377162 50377188 -105252932 + (A)n Simple_repeat Simple_repeat 1 26 0 5 969 3293 230 93 57 chr4 50377202 50378521 -105251599 + ORR1B2-int LTR MaLR 1 1315 -55 5 969 3046 23 3 0 chr4 50378522 50378867 -105251253 + ORR1A0 LTR MaLR 1 346 0 5 969 14089 49 8 2 chr4 50378867 50380647 -105249473 + ORR1A0-int LTR MaLR 1 1792 0 5 969 2777 39 0 0 chr4 50380647 50380985 -105249135 + ORR1A0 LTR MaLR 1 338 -8 5 969 316 186 0 17 chr4 50380983 50381043 -105249077 + ORR1B2-int LTR MaLR 1445 1503 -6 5 969 1405 222 106 3 chr4 50381044 50381374 -105248746 + ORR1B2 LTR MaLR 1 364 -3 5 969 1047 268 26 74 chr4 50381374 50381474 -105248646 + Lx8 LINE L1 6724 6800 -673 5 969 515 180 0 0 chr4 50381474 50381574 -105248546 - Lx2 LINE L1 -3 6994 6895 5 969 1047 268 26 74 chr4 50381574 50381864 -105248256 + Lx8 LINE L1 6801 7095 -378 5 969 483 18 0 0 chr4 50382007 50382063 -105248057 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 969 298 253 0 71 chr4 50383222 50383307 -105246813 + Lx8 LINE L1 7233 7311 -162 5 969 1779 223 41 70 chr4 50383327 50383871 -105246249 + RMER19B LTR ERVK 86 664 -238 5 969 515 107 12 0 chr4 50383898 50383982 -105246138 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 5 969 225 395 15 7 chr4 50384201 50384336 -105245784 + L2 LINE L2 1982 2117 -1302 5 969 333 0 0 0 chr4 50385901 50385938 -105244182 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 969 423 0 0 0 chr4 50385938 50385984 -105244136 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 969 297 222 65 75 chr4 50386020 50386127 -105243993 - MLT1D LTR MaLR -369 136 31 5 969 1043 130 27 0 chr4 50386169 50386354 -105243766 + Lx2A LINE L1 6744 6933 -75 5 969 378 74 0 0 chr4 50386439 50386493 -105243627 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 969 384 138 0 0 chr4 50386500 50386558 -105243562 + ORR1D1 LTR MaLR 5 62 -312 5 969 357 156 10 59 chr4 50386565 50386667 -105243453 + Lx2A LINE L1 6904 7000 0 5 969 360 43 0 0 chr4 50387206 50387252 -105242868 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 969 1579 198 104 9 chr4 50387259 50387606 -105242514 + ORR1C2 LTR MaLR 5 384 0 5 969 244 344 87 66 chr4 50387897 50388475 -105241645 - Kanga2_a DNA Tc2 -105 783 194 5 969 2205 258 108 3 chr4 50388594 50389193 -105240927 - Lx6 LINE L1 -6 7454 6793 5 969 3110 211 41 40 chr4 50389206 50390348 -105239772 - Lx6 LINE L1 -362 6688 5203 5 969 2305 179 159 11 chr4 50390357 50390912 -105239208 - RMER6C LTR ERVK -2 688 52 5 969 1159 212 39 39 chr4 50390914 50391595 -105238525 - Lx6 LINE L1 -4368 1509 892 5 969 35368 36 0 0 chr4 50393203 50398811 -105231309 + L1Md_T LINE L1 1 5589 -297 5 969 8909 8 0 3 chr4 50398811 50399810 -105230310 + L1Md_T LINE L1 5590 6585 0 5 969 406 323 70 65 chr4 50401176 50401375 -105228745 + B3A SINE B2 6 205 -11 5 969 233 155 17 0 chr4 50401394 50401452 -105228668 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 969 213 65 0 0 chr4 50401451 50401482 -105228638 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 969 328 329 96 39 chr4 50401776 50402108 -105228012 - L1MC3 LINE L1 -20 7765 7415 5 969 282 330 69 81 chr4 50402309 50402814 -105227306 - L1MC3 LINE L1 -800 6985 6487 5 969 313 341 111 34 chr4 50402892 50403189 -105226931 - L1MC3 LINE L1 -1561 6434 6115 5 969 246 32 0 0 chr4 50403298 50403329 -105226791 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 5 969 1473 199 79 6 chr4 50403359 50403768 -105226352 - Lx4B LINE L1 -80 6978 6454 5 969 309 275 112 24 chr4 50404035 50404240 -105225880 - L1MC LINE L1 -1428 4718 4496 5 969 961 253 0 18 chr4 50404286 50404515 -105225605 - Lx3C LINE L1 -2 6974 6750 5 969 1809 122 4 7 chr4 50404513 50404793 -105225327 - Lx3C LINE L1 -971 6005 5727 5 969 18117 173 17 18 chr4 50404789 50408764 -105221356 - L1_Mur1 LINE L1 -1092 4794 833 5 969 23 54 0 0 chr4 50409414 50409451 -105220669 + AT_rich Low_complexity Low_complexity 1 37 0 5 969 22 0 0 0 chr4 50409678 50409700 -105220420 + AT_rich Low_complexity Low_complexity 1 22 0 5 969 2205 225 11 48 chr4 50409729 50410251 -105219869 + Lx6 LINE L1 6374 6876 -584 5 969 240 154 0 0 chr4 50410283 50410335 -105219785 + GA-rich Low_complexity Low_complexity 2 53 0 5 969 470 295 70 13 chr4 50410335 50410493 -105219627 + Lx6 LINE L1 6879 7045 -415 5 969 953 158 25 20 chr4 50410493 50410693 -105219427 + Lx2 LINE L1 6797 6997 0 5 969 5041 255 41 21 chr4 50410694 50412044 -105218076 - Lx7 LINE L1 -125 7571 6195 5 969 351 0 0 0 chr4 50412044 50412083 -105218037 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 969 1170 256 25 152 chr4 50412103 50412591 -105217529 + Lx7 LINE L1 5587 5995 -1701 5 969 1820 146 9 56 chr4 50412591 50412932 -105217188 + ORR1A4 LTR MaLR 1 325 -4 5 969 1170 256 25 152 chr4 50412932 50413082 -105217038 + Lx7 LINE L1 5996 6144 -1552 5 969 21 71 0 0 chr4 50413923 50413965 -105216155 + AT_rich Low_complexity Low_complexity 1 42 0 5 969 28 61 0 0 chr4 50414568 50414617 -105215503 + AT_rich Low_complexity Low_complexity 1 49 0 5 969 215 152 22 0 chr4 50414653 50414699 -105215421 + CT-rich Low_complexity Low_complexity 2 48 0 5 969 7896 54 6 6 chr4 50414751 50415867 -105214253 + L1_Mus1 LINE L1 5449 6564 -3 5 969 4070 154 79 3 chr4 50415908 50416593 -105213527 - RMER19A LTR ERVK 0 737 1 5 969 213 258 0 0 chr4 50418073 50418135 -105211985 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 969 1869 42 21 4 chr4 50418149 50418389 -105211731 + L1Md_F3 LINE L1 6341 6584 0 5 969 781 295 0 0 chr4 50418650 50418833 -105211287 - B3 SINE B2 -2 214 32 5 969 387 0 0 0 chr4 50418834 50418877 -105211243 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 969 2003 52 0 12 chr4 50418878 50419131 -105210989 - L1Md_F3 LINE L1 -27 6557 6308 5 969 2759 52 9 117 chr4 50419131 50419568 -105210552 + RLTR10 LTR ERVK 1 390 0 5 969 13099 25 10 0 chr4 50419578 50420802 -105209318 + RLTR10-int LTR ERVK 41 1346 -641 5 969 180 0 0 0 chr4 50420802 50420822 -105209298 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 969 13099 18 13 0 chr4 50420822 50421448 -105208672 + RLTR10-int LTR ERVK 1347 1982 -5 5 969 2770 49 9 117 chr4 50421450 50421887 -105208233 + RLTR10 LTR ERVK 1 390 0 5 969 698 28 92 4 chr4 50421887 50421991 -105208129 - L1Md_F3 LINE L1 -268 6314 6202 5 969 239 263 0 26 chr4 50421997 50422075 -105208045 + L1Md_A LINE L1 350 425 -6191 5 969 322 103 103 0 chr4 50422073 50422131 -105207989 + L1Md_A LINE L1 928 991 -5733 5 969 6364 62 1 0 chr4 50422117 50422923 -105207197 + L1Md_F2 LINE L1 4780 5586 -297 5 969 7926 53 3 0 chr4 50422923 50423944 -105206176 + L1Md_F2 LINE L1 5587 6582 0 5 969 7285 58 2 7 chr4 50423944 50425184 -105204936 + L1Md_A LINE L1 951 2184 -3699 5 969 2082 148 18 6 chr4 50425489 50425853 -105204267 + ORR1A2 LTR MaLR 1 374 0 5 969 219 302 0 0 chr4 50426162 50426215 -105203905 + CT-rich Low_complexity Low_complexity 5 57 0 5 969 487 219 8 42 chr4 50426228 50426347 -105203773 + B1_Mus2 SINE Alu 22 136 -11 5 969 272 27 27 0 chr4 50426347 50426384 -105203736 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 969 5340 180 34 4 chr4 50426510 50427457 -105202663 - Lx4A LINE L1 -10 7048 6074 5 969 3468 149 0 12 chr4 50427460 50428046 -105202074 + L1_Mur2 LINE L1 4979 5557 -320 5 969 570 29 0 0 chr4 50428882 50428950 -105201170 + (TTA)n Simple_repeat Simple_repeat 2 69 0 5 969 264 59 0 0 chr4 50429166 50429200 -105200920 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 969 251 338 63 0 chr4 50429399 50429541 -105200579 + L1M4 LINE L1 5424 5574 -610 5 969 228 297 0 0 chr4 50429774 50429838 -105200282 + L1M4 LINE L1 5864 5927 -517 5 969 248 77 0 25 chr4 50430174 50430214 -105199906 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 969 3165 100 14 43 chr4 50432562 50433051 -105197069 - MT2C_Mm LTR ERVL 0 475 1 5 969 288 254 13 66 chr4 50433601 50433677 -105196443 + B4A SINE B4 134 205 -87 5 969 202 281 0 0 chr4 50433707 50433771 -105196349 + A-rich Low_complexity Low_complexity 3 66 0 5 969 215 114 23 0 chr4 50433890 50433934 -105196186 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 969 834 291 128 12 chr4 50434142 50434462 -105195658 + MLT1A LTR MaLR 1 357 -17 5 969 235 330 28 46 chr4 50434487 50434595 -105195525 + MLT1A1 LTR MaLR 25 130 -278 5 969 226 297 67 38 chr4 50434774 50434879 -105195241 + ORR1A4 LTR MaLR 180 287 -42 5 969 449 152 0 9 chr4 50435383 50435489 -105194631 + CT-rich Low_complexity Low_complexity 2 106 0 5 969 466 346 62 5 chr4 50436561 50436753 -105193367 + B3 SINE B2 2 204 -12 5 969 234 349 41 29 chr4 50438328 50438499 -105191621 + MIRb SINE MIR 95 267 -1 5 969 21 36 0 0 chr4 50439711 50439739 -105190381 + AT_rich Low_complexity Low_complexity 1 28 0 5 969 27 0 0 0 chr4 50439825 50439852 -105190268 + AT_rich Low_complexity Low_complexity 1 27 0 5 969 21 57 0 0 chr4 50440089 50440124 -105189996 + AT_rich Low_complexity Low_complexity 1 35 0 5 969 229 294 111 0 chr4 50440345 50440471 -105189649 - L1MEf LINE L1 -4455 1745 1606 5 969 287 212 50 0 chr4 50441085 50441184 -105188936 - Lx9 LINE L1 -53 7591 7488 5 969 682 247 138 8 chr4 50441255 50441508 -105188612 - Lx9 LINE L1 -124 7520 7235 6 969 398 69 17 0 chr4 50441554 50441612 -105188508 + (TTA)n Simple_repeat Simple_repeat 2 60 0 6 969 948 136 0 0 chr4 50441612 50441752 -105188368 - B1_Mus1 SINE Alu -8 140 1 6 969 25 38 0 37 chr4 50442341 50442373 -105187747 + AT_rich Low_complexity Low_complexity 1 32 0 6 969 712 204 185 6 chr4 50442373 50442546 -105187574 - B3 SINE B2 -12 204 1 6 969 25 38 0 37 chr4 50442546 50442567 -105187553 + AT_rich Low_complexity Low_complexity 1 20 0 6 969 423 0 0 0 chr4 50442682 50442729 -105187391 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 969 225 139 0 0 chr4 50443136 50443179 -105186941 + (T)n Simple_repeat Simple_repeat 1 43 0 6 969 1106 75 0 14 chr4 50443186 50443334 -105186786 - B1_Mus1 SINE Alu -1 147 2 6 969 328 246 114 43 chr4 50443656 50443796 -105186324 + MLT1A1 LTR MaLR 258 407 -1 6 969 3646 120 72 7 chr4 50444951 50445548 -105184572 - Lx LINE L1 -4 6650 6015 6 969 966 81 52 0 chr4 50445725 50445861 -105184259 + B1_Mus1 SINE Alu 5 147 -1 6 969 360 64 0 0 chr4 50445861 50445908 -105184212 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 6 969 7580 146 23 6 chr4 50446859 50448179 -105181941 - L1_Mur2 LINE L1 -1103 4774 3433 6 969 6026 151 13 5 chr4 50448178 50449323 -105180797 + L1_Mus4 LINE L1 4775 5927 -709 6 969 4705 98 30 7 chr4 50449936 50450626 -105179494 + L1_Mus4 LINE L1 5931 6636 0 6 969 25 31 0 0 chr4 50450666 50450698 -105179422 + AT_rich Low_complexity Low_complexity 1 32 0 6 969 22 70 0 0 chr4 50451488 50451531 -105178589 + AT_rich Low_complexity Low_complexity 1 43 0 6 969 243 0 0 0 chr4 50451819 50451846 -105178274 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6 969 21 0 0 0 chr4 50452606 50452627 -105177493 + AT_rich Low_complexity Low_complexity 1 21 0 6 969 306 0 0 0 chr4 50453298 50453332 -105176788 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 969 1162 146 33 0 chr4 50453448 50453661 -105176459 - Lx2 LINE L1 -2 6995 6776 6 969 1018 90 50 25 chr4 50453683 50453843 -105176277 - RLTR17 LTR ERVK -528 164 1 6 969 275 347 0 0 chr4 50453848 50453923 -105176197 - B4 SINE B4 -216 76 2 6 969 963 209 66 5 chr4 50453992 50454203 -105175917 - MTC LTR MaLR 0 419 196 6 969 676 130 13 27 chr4 50454205 50454242 -105175878 + polypyrimidine Low_complexity Low_complexity 116 151 0 6 969 1283 72 0 6 chr4 50454242 50454423 -105175697 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 969 2400 119 82 29 chr4 50454423 50455088 -105175032 - L1_Mus4 LINE L1 0 6636 5982 6 969 1062 129 25 20 chr4 50455088 50455285 -105174835 - MTC LTR MaLR -211 210 13 6 969 311 154 299 28 chr4 50455305 50455412 -105174708 - MTC-int LTR MaLR 0 1258 1123 6 969 1227 215 145 89 chr4 50455452 50455901 -105174219 - RMER19C LTR ERVK 0 611 138 6 969 804 309 94 35 chr4 50456505 50456907 -105173213 + Lx8 LINE L1 6902 7327 -146 6 969 416 365 30 0 chr4 50456917 50457084 -105173036 + B3A SINE B2 14 185 -13 6 969 444 19 0 0 chr4 50457115 50457168 -105172952 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 969 566 160 0 0 chr4 50458079 50458179 -105171941 - L1_Mur2 LINE L1 -3097 2780 2681 6 969 12302 67 11 65 chr4 50458179 50460029 -105170091 - RLTR22_Mus LTR ERVK 0 1808 58 6 969 6216 59 1 1 chr4 50460029 50460814 -105169306 - L1_Mm LINE L1 -186 5697 4913 6 969 478 241 0 0 chr4 50460826 50460957 -105169163 - L1_Mur2 LINE L1 -2890 651 521 6 969 276 164 0 0 chr4 50461741 50461808 -105168312 + CT-rich Low_complexity Low_complexity 1 67 0 6 969 415 360 31 68 chr4 50461901 50462092 -105168028 - B4A SINE B4 -106 186 3 6 121 1707 237 88 29 chr4 50462375 50462866 -105167254 + RMER1B Other Other 413 1052 -14 6 970 2031 56 4 7 chr4 50464828 50465099 -105165021 - L1_Mm LINE L1 -447 5436 5167 6 970 885 24 0 95 chr4 50465100 50465257 -105164863 + L1Md_F2 LINE L1 6458 6582 0 6 970 22 0 0 0 chr4 50466212 50466234 -105163886 + AT_rich Low_complexity Low_complexity 1 22 0 6 970 845 360 27 29 chr4 50466622 50467145 -105162975 + Lx8 LINE L1 6813 7334 -139 6 970 480 139 0 0 chr4 50467190 50467269 -105162851 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 970 450 49 0 0 chr4 50467275 50467336 -105162784 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 970 24 67 0 0 chr4 50467503 50467548 -105162572 + AT_rich Low_complexity Low_complexity 1 45 0 6 970 276 208 0 0 chr4 50467806 50467907 -105162213 + T-rich Low_complexity Low_complexity 1 101 0 6 970 1094 75 7 0 chr4 50467907 50468054 -105162066 - B1_Mus1 SINE Alu 0 148 1 6 970 1613 272 85 12 chr4 50468062 50468543 -105161577 + Lx9 LINE L1 6339 6854 -790 6 970 280 210 55 24 chr4 50468594 50468721 -105161399 + Lx9 LINE L1 7513 7643 -1 6 970 1300 287 67 25 chr4 50468783 50469215 -105160905 + Lx8 LINE L1 6886 7335 -138 6 970 887 296 33 10 chr4 50469209 50469608 -105160512 - L1_Mur3 LINE L1 -527 5353 4946 6 970 301 195 1 26 chr4 50469637 50469722 -105160398 + L1_Mur3 LINE L1 5379 5496 -804 6 970 296 339 76 6 chr4 50469795 50469967 -105160153 - L1M5 LINE L1 -374 5805 5622 6 970 850 173 6 31 chr4 50470441 50470602 -105159518 - URR1A DNA MER1_type 0 226 70 6 970 449 76 21 21 chr4 50471256 50471350 -105158770 + (TTTTTG)n Simple_repeat Simple_repeat 2 95 0 6 970 1184 42 0 0 chr4 50471355 50471498 -105158622 - B1_Mus2 SINE Alu 0 147 5 6 970 205 191 0 0 chr4 50472698 50472740 -105157380 + T-rich Low_complexity Low_complexity 1 42 0 6 970 3296 166 30 21 chr4 50473014 50473637 -105156483 + Lx3C LINE L1 6348 6976 0 6 970 699 130 138 0 chr4 50473645 50473783 -105156337 - RMER6-int LTR ERVK -24 3153 2997 6 970 1556 197 146 22 chr4 50474927 50475337 -105154783 - RMER6A LTR ERVK 0 461 1 6 970 1169 200 100 0 chr4 50475345 50475625 -105154495 - RMER6-int LTR ERVK -11 3166 2859 6 970 658 60 20 0 chr4 50475625 50475725 -105154395 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 6 970 1267 94 0 0 chr4 50475730 50475910 -105154210 - L1_Mus2 LINE L1 -1 6565 6386 6 970 570 170 0 0 chr4 50475912 50476012 -105154108 - RMER6-int LTR ERVK -2787 390 291 6 970 533 199 7 0 chr4 50476014 50476165 -105153955 + (TA)n Simple_repeat Simple_repeat 1 152 0 6 970 1572 151 42 31 chr4 50476165 50476452 -105153668 - RMER6-int LTR ERVK -2881 296 7 6 970 2061 175 13 8 chr4 50476480 50476736 -105153384 - RMER6A LTR ERVK 0 756 503 6 970 561 80 0 0 chr4 50476736 50476824 -105153296 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 6 970 2061 175 13 8 chr4 50476824 50476947 -105153173 - RMER6A LTR ERVK -254 502 376 6 970 1297 126 28 14 chr4 50476981 50477199 -105152921 + Lx2 LINE L1 6767 6987 -10 6 970 833 67 67 0 chr4 50477381 50477500 -105152620 - Lx2 LINE L1 -216 6781 6655 6 970 5709 75 5 3 chr4 50477951 50478702 -105151418 - L1_Mus1 LINE L1 0 6567 5815 6 970 23 0 0 0 chr4 50478929 50478952 -105151168 + AT_rich Low_complexity Low_complexity 1 23 0 6 970 1248 226 8 41 chr4 50479209 50479507 -105150613 + RLTR18 LTR ERVK 131 398 -218 6 970 38289 37 0 0 chr4 50479507 50485210 -105144910 - L1Md_T LINE L1 0 6585 788 6 970 30259 40 1 0 chr4 50485205 50488938 -105141182 + L1Md_T LINE L1 1850 5586 -297 6 970 8237 42 0 0 chr4 50488939 50489934 -105140186 + L1Md_T LINE L1 5588 6582 0 6 970 338 0 24 0 chr4 50490010 50490052 -105140068 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 970 441 0 0 0 chr4 50490053 50490102 -105140018 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 970 21 0 0 0 chr4 50490104 50490125 -105139995 + AT_rich Low_complexity Low_complexity 1 21 0 6 970 396 283 62 53 chr4 50490708 50490917 -105139203 - L1M4 LINE L1 -6316 226 16 6 970 587 113 0 9 chr4 50491453 50491560 -105138560 + L1_Mus3 LINE L1 6533 6638 0 6 970 4785 241 51 6 chr4 50491741 50493027 -105137093 + Lx3C LINE L1 5655 6973 -3 6 970 219 69 0 0 chr4 50493043 50493072 -105137048 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 970 242 217 0 24 chr4 50493596 50493681 -105136439 + (CGTG)n Simple_repeat Simple_repeat 1 83 0 6 970 243 0 0 0 chr4 50494071 50494098 -105136022 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 970 504 0 0 0 chr4 50494098 50494153 -105135967 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 970 708 244 32 54 chr4 50494286 50494507 -105135613 + B3 SINE B2 1 216 0 6 970 407 305 24 85 chr4 50495005 50495077 -105135043 - B4A SINE B4 -137 155 89 6 970 231 61 0 0 chr4 50495077 50495110 -105135010 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 970 407 305 24 85 chr4 50495110 50495129 -105134991 - B4A SINE B4 -204 88 76 6 970 447 19 0 0 chr4 50495129 50495181 -105134939 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 970 407 305 24 85 chr4 50495181 50495253 -105134867 - B4A SINE B4 -217 75 1 6 970 292 94 19 19 chr4 50495360 50495414 -105134706 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 970 182 318 15 15 chr4 50495414 50495481 -105134639 - MIR SINE MIR -83 179 113 6 970 462 18 0 0 chr4 50495794 50495849 -105134271 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 970 578 252 79 5 chr4 50495863 50496066 -105134054 - Lx9 LINE L1 -176 7468 7251 6 970 7197 84 7 7 chr4 50496075 50497050 -105133070 - L1Md_F2 LINE L1 0 6582 5608 6 970 416 282 9 18 chr4 50497059 50497171 -105132949 - Lx9 LINE L1 -425 7219 7109 6 970 252 0 0 0 chr4 50498415 50498443 -105131677 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 970 4143 149 9 30 chr4 50498444 50499122 -105130998 + Lx4A LINE L1 6233 6896 -162 6 970 336 24 0 0 chr4 50499133 50499174 -105130946 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 970 25 99 0 0 chr4 50499696 50499777 -105130343 + AT_rich Low_complexity Low_complexity 1 81 0 6 970 21 0 0 0 chr4 50499812 50499833 -105130287 + AT_rich Low_complexity Low_complexity 1 21 0 6 970 198 0 0 0 chr4 50499915 50499937 -105130183 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 970 225 0 0 0 chr4 50499939 50499964 -105130156 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 970 850 309 96 30 chr4 50500784 50501118 -105129002 - ORR1E LTR MaLR 0 359 4 1 970 979 325 72 9 chr4 50501417 50501846 -105128274 - Lx8 LINE L1 -274 7199 6744 2 970 426 361 52 30 chr4 50501895 50502200 -105127920 + Lx8 LINE L1 6779 7090 -383 3 970 853 314 3 21 chr4 50502197 50502480 -105127640 + Lx8 LINE L1 6377 6654 -819 4 970 3441 25 2 0 chr4 50502491 50502886 -105127234 + MTA_Mm LTR MaLR 1 396 0 5 970 1749 309 24 9 chr4 50502982 50503639 -105126481 - Lx5 LINE L1 -76 6974 6405 6 970 25 0 0 0 chr4 50504005 50504030 -105126090 + AT_rich Low_complexity Low_complexity 1 25 0 7 970 645 49 0 0 chr4 50504260 50504341 -105125779 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 8 970 303 93 0 0 chr4 50505349 50505392 -105124728 + (TCC)n Simple_repeat Simple_repeat 3 45 0 9 970 1054 258 229 14 chr4 50505430 50505968 -105124152 - Lx6 LINE L1 -27 7433 6670 1 970 201 39 0 0 chr4 50505990 50506016 -105124104 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 970 22 35 0 0 chr4 50506016 50506045 -105124075 + AT_rich Low_complexity Low_complexity 1 29 0 1 970 23 33 0 0 chr4 50506259 50506289 -105123831 + AT_rich Low_complexity Low_complexity 1 30 0 1 970 28 0 0 0 chr4 50506430 50506458 -105123662 + AT_rich Low_complexity Low_complexity 1 28 0 1 970 6992 129 4 2 chr4 50506458 50507758 -105122362 - L1_Mus4 LINE L1 0 6636 5334 1 970 861 169 14 0 chr4 50507778 50507926 -105122194 - L1_Mus4 LINE L1 -1026 4857 4708 1 970 3495 173 14 73 chr4 50507920 50508065 -105122055 + Lx2A1 LINE L1 3055 3183 -2694 1 970 257 68 0 22 chr4 50508065 50508110 -105122010 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 970 3495 173 14 73 chr4 50508110 50508770 -105121350 + Lx2A1 LINE L1 3184 3812 -2065 1 970 2768 179 34 6 chr4 50508767 50509272 -105120848 - Lx2A1 LINE L1 -480 6528 6010 1 970 2841 162 54 0 chr4 50509273 50509951 -105120169 + Lx2A1 LINE L1 5299 5998 -1010 1 970 944 300 22 110 chr4 50510277 50510685 -105119435 + MTE2a LTR MaLR 8 379 0 1 970 288 67 50 0 chr4 50511785 50511845 -105118275 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 970 335 104 37 28 chr4 50513094 50513203 -105116917 + (CAAA)n Simple_repeat Simple_repeat 2 111 0 2 970 355 270 84 42 chr4 50513239 50513405 -105116715 + Lx9 LINE L1 7268 7440 -204 2 970 441 286 0 64 chr4 50513580 50513737 -105116383 + B3A SINE B2 50 196 -2 2 970 405 312 39 8 chr4 50514118 50514247 -105115873 + B3A SINE B2 50 182 -16 2 970 8174 162 86 34 chr4 50514519 50514992 -105115128 - RLTR22_Mur LTR ERVK 0 1848 1365 2 970 495 48 0 0 chr4 50514992 50515054 -105115066 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 970 525 104 0 0 chr4 50515054 50515131 -105114989 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 970 8174 162 86 34 chr4 50515131 50516338 -105113782 - RLTR22_Mur LTR ERVK -484 1364 80 2 970 2338 188 7 22 chr4 50516358 50516815 -105113305 - Lx3B LINE L1 -5 6968 6519 2 970 1993 127 3 0 chr4 50516815 50517107 -105113013 - Lx3B LINE L1 -1094 5879 5587 2 970 270 42 41 20 chr4 50517127 50517176 -105112944 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 2 970 1733 135 21 0 chr4 50517176 50517458 -105112662 + L1_Mur1 LINE L1 5299 5586 -300 2 970 336 139 16 45 chr4 50517458 50517542 -105112578 - RLTR22_Mur LTR ERVK -1718 90 5 2 970 3988 132 21 2 chr4 50518319 50518934 -105111186 + Lx LINE L1 5927 6553 -101 3 970 5411 102 2 26 chr4 50518934 50519731 -105110389 + L1_Mus3 LINE L1 5859 6636 -2 3 970 231 42 83 0 chr4 50519987 50520035 -105110085 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 3 970 195 42 0 0 chr4 50520320 50520344 -105109776 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 970 436 291 155 75 chr4 50520393 50520780 -105109340 + MER34 LTR ERV1 73 490 -52 3 970 501 17 0 0 chr4 50520898 50520956 -105109164 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 970 22 80 0 0 chr4 50521146 50521196 -105108924 + AT_rich Low_complexity Low_complexity 1 50 0 3 970 296 182 73 0 chr4 50521637 50521692 -105108428 + PB1D9 SINE Alu 1 59 -61 3 970 599 322 16 70 chr4 50522276 50522520 -105107600 + B4A SINE B4 2 232 -60 3 970 5342 108 69 28 chr4 50522520 50523407 -105106713 + L1_Mus4 LINE L1 5714 6636 0 3 970 21 0 0 0 chr4 50524052 50524073 -105106047 + AT_rich Low_complexity Low_complexity 1 21 0 4 970 200 143 12 61 chr4 50525983 50526065 -105104055 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 4 970 28 71 0 0 chr4 50526167 50526223 -105103897 + AT_rich Low_complexity Low_complexity 1 56 0 4 970 6025 136 101 5 chr4 50526224 50527307 -105102813 - Lx3B LINE L1 -2 6971 5785 4 970 267 54 0 0 chr4 50527636 50527673 -105102447 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 970 208 178 22 0 chr4 50527705 50527750 -105102370 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 4 970 7727 117 37 14 chr4 50527944 50529175 -105100945 - Lx2 LINE L1 -1 6996 5738 4 970 464 350 0 0 chr4 50529178 50529315 -105100805 + ID_B1 SINE B4 86 222 -2 4 970 4822 72 13 0 chr4 50529588 50530225 -105099895 - L1Md_F2 LINE L1 0 6582 5938 4 970 1938 197 57 5 chr4 50530386 50530773 -105099347 + MTB_Mm LTR MaLR 1 407 0 4 970 29 0 0 0 chr4 50530945 50530974 -105099146 + AT_rich Low_complexity Low_complexity 1 29 0 5 970 39875 24 4 6 chr4 50531580 50537973 -105092147 - L1Md_A LINE L1 0 6582 208 5 970 4932 96 30 15 chr4 50539459 50540196 -105089924 + Lx3_Mus LINE L1 6261 7008 -1 5 970 889 204 125 0 chr4 50540203 50540304 -105089816 + Lx5 LINE L1 3527 3633 -2244 5 970 351 0 0 0 chr4 50540304 50540343 -105089777 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 970 889 204 125 0 chr4 50540343 50540481 -105089639 + Lx5 LINE L1 3634 3795 -2082 5 970 1925 209 8 13 chr4 50540505 50540902 -105089218 + Lx5 LINE L1 5401 5795 -82 5 970 35333 35 0 0 chr4 50540902 50546330 -105083790 + L1Md_Gf LINE L1 64 5589 -297 5 970 9032 2 0 0 chr4 50546330 50547326 -105082794 + L1Md_A LINE L1 5587 6582 0 5 970 2585 14 0 0 chr4 50547326 50547619 -105082501 + L1Md_T LINE L1 5294 5586 -297 5 970 8912 5 1 1 chr4 50547619 50548614 -105081506 + L1Md_T LINE L1 5587 6581 -1 5 970 800 129 0 15 chr4 50548617 50548751 -105081369 + Lx5 LINE L1 5792 5923 -1127 5 970 3984 275 37 28 chr4 50549109 50550211 -105079909 + Lx5 LINE L1 5930 7041 -9 5 970 297 0 0 0 chr4 50550255 50550288 -105079832 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 970 537 16 0 0 chr4 50550288 50550349 -105079771 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 970 434 350 14 48 chr4 50550357 50550504 -105079616 - RSINE1 SINE B4 -22 143 2 6 970 1739 216 26 178 chr4 50552114 50552433 -105077687 + RMER6D LTR ERVK 1 333 -387 6 970 718 39 0 19 chr4 50552433 50552537 -105077583 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 970 1739 216 26 178 chr4 50552537 50553066 -105077054 + RMER6D LTR ERVK 334 720 0 6 970 494 91 0 13 chr4 50553112 50553190 -105076930 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 970 497 105 75 0 chr4 50553979 50554080 -105076040 - Lx LINE L1 -6 6648 6527 6 970 22 35 0 0 chr4 50555410 50555439 -105074681 + AT_rich Low_complexity Low_complexity 1 29 0 6 970 28 71 0 0 chr4 50555552 50555608 -105074512 + AT_rich Low_complexity Low_complexity 1 56 0 6 970 425 373 152 27 chr4 50556007 50556382 -105073738 - MLT1H LTR MaLR -11 538 117 6 970 213 217 23 35 chr4 50556659 50556745 -105073375 + (CAA)n Simple_repeat Simple_repeat 1 85 0 6 970 446 191 17 0 chr4 50556830 50556945 -105073175 + CT-rich Low_complexity Low_complexity 1 117 0 6 970 3238 248 59 17 chr4 50556945 50557889 -105072231 - Lx9 LINE L1 -37 7607 6624 7 970 213 178 0 0 chr4 50557932 50557977 -105072143 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 970 341 285 152 62 chr4 50558673 50558916 -105071204 - B4A SINE B4 -3 289 25 7 970 1311 325 38 21 chr4 50559519 50560332 -105069788 - L1MA9 LINE L1 -157 6155 5329 7 970 2027 157 0 0 chr4 50560379 50560697 -105069423 - ORR1A3 LTR MaLR -8 318 1 7 970 592 297 93 48 chr4 50560706 50561227 -105068893 - L1MA9 LINE L1 -876 5264 4709 7 970 2591 52 65 0 chr4 50561227 50561552 -105068568 + ORR1A1 LTR MaLR 1 346 0 7 970 592 297 93 48 chr4 50561552 50561740 -105068380 - L1MA9 LINE L1 -1432 4708 4523 7 970 21 0 0 0 chr4 50562720 50562741 -105067379 + AT_rich Low_complexity Low_complexity 1 21 0 7 970 4436 48 2 2 chr4 50563160 50563701 -105066419 - L1Md_F2 LINE L1 -71 5812 5272 7 970 5919 58 4 1 chr4 50563704 50564460 -105065660 + L1Md_F2 LINE L1 5825 6582 0 7 970 25 0 0 0 chr4 50564791 50564816 -105065304 + AT_rich Low_complexity Low_complexity 1 25 0 7 970 253 65 0 0 chr4 50564890 50564936 -105065184 - L1Md_T LINE L1 0 6582 6537 7 970 22 35 0 0 chr4 50565113 50565142 -105064978 + AT_rich Low_complexity Low_complexity 1 29 0 8 970 31 0 0 0 chr4 50565309 50565340 -105064780 + AT_rich Low_complexity Low_complexity 1 31 0 8 970 32998 93 9 6 chr4 50565604 50571678 -105058442 - L1Md_F2 LINE L1 -12 6570 480 8 970 440 176 0 0 chr4 50571678 50571752 -105058368 - L1VL1 LINE L1 -6156 266 193 8 970 5133 172 19 30 chr4 50571911 50572877 -105057243 + Lx3B LINE L1 6017 6971 -2 8 970 36 0 0 0 chr4 50572885 50572921 -105057199 + AT_rich Low_complexity Low_complexity 1 36 0 8 970 1187 168 101 4 chr4 50573085 50573312 -105056808 + RMER6B LTR ERVK 213 461 0 8 970 754 269 10 5 chr4 50573663 50573857 -105056263 + Lx9 LINE L1 7271 7465 -179 8 970 441 0 0 0 chr4 50574049 50574098 -105056022 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 970 7421 69 4 22 chr4 50574198 50575274 -105054846 + L1_Mus1 LINE L1 5497 6556 -11 8 970 7443 5 0 0 chr4 50575274 50576148 -105053972 + L1Md_T LINE L1 5758 6582 0 9 970 361 344 49 45 chr4 50576295 50576560 -105053560 - Lx8 LINE L1 -8 7465 7200 9 970 1781 142 35 3 chr4 50576596 50576906 -105053214 + L1_Mur2 LINE L1 4832 5151 -726 9 970 764 282 85 77 chr4 50577294 50577670 -105052450 + MTEb LTR MaLR 1 379 0 9 970 207 0 0 0 chr4 50577675 50577698 -105052422 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 970 23 0 0 0 chr4 50577828 50577851 -105052269 + AT_rich Low_complexity Low_complexity 1 23 0 9 970 225 94 0 0 chr4 50578010 50578042 -105052078 + (T)n Simple_repeat Simple_repeat 1 32 0 9 970 6026 13 0 0 chr4 50578042 50578728 -105051392 + L1Md_A LINE L1 4901 5586 -297 9 970 8597 22 1 0 chr4 50578729 50579723 -105050397 + L1Md_A LINE L1 5588 6582 0 9 970 2080 157 0 29 chr4 50579723 50580097 -105050023 - Lx LINE L1 -11 6643 6281 9 970 290 204 35 28 chr4 50580374 50580515 -105049605 + (TA)n Simple_repeat Simple_repeat 1 142 0 9 970 194 57 0 54 chr4 50580979 50581016 -105049104 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 1 970 1092 60 13 0 chr4 50581031 50581181 -105048939 - L1Md_A LINE L1 -1 6581 6430 1 970 2426 28 0 0 chr4 50581182 50581464 -105048656 + L1Md_T LINE L1 6134 6415 -167 1 970 458 279 233 18 chr4 50581830 50582053 -105048067 - B4A SINE B4 -20 272 2 1 970 914 355 92 42 chr4 50583795 50584221 -105045899 - MER54B LTR ERVL 0 793 358 1 970 515 30 0 0 chr4 50584221 50584288 -105045832 + L1Md_T LINE L1 6514 6580 -2 1 970 914 355 92 42 chr4 50584288 50584500 -105045620 - MER54B LTR ERVL -436 357 124 1 970 360 260 31 31 chr4 50584550 50584677 -105045443 - Lx7 LINE L1 -5 7691 7565 1 970 4517 144 42 34 chr4 50584683 50585446 -105044674 + L1VL4 LINE L1 13 781 -5521 1 970 5173 191 63 16 chr4 50585440 50585890 -105044230 + L1_Mur2 LINE L1 2409 2894 -2983 1 970 813 49 0 0 chr4 50585890 50585992 -105044128 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 1 970 6600 88 24 15 chr4 50585992 50586983 -105043137 + L1_Mur2 LINE L1 2895 3912 -2 1 970 21 0 0 0 chr4 50587045 50587066 -105043054 + AT_rich Low_complexity Low_complexity 1 21 0 1 970 210 238 0 0 chr4 50587077 50587119 -105043001 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 970 477 47 0 0 chr4 50587264 50587328 -105042792 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 970 1086 246 84 14 chr4 50587407 50587691 -105042429 - Lx7 LINE L1 -386 7310 7007 1 970 658 192 71 19 chr4 50587692 50587846 -105042274 - RMER19B LTR ERVK 0 902 741 1 970 1693 196 47 13 chr4 50587847 50588219 -105041901 - Lx3C LINE L1 -27 6973 6616 1 970 965 279 41 189 chr4 50588219 50588780 -105041340 - RMER19C LTR ERVK -133 478 1 1 970 3230 265 65 22 chr4 50588780 50588996 -105041124 - Lx7 LINE L1 -685 7011 6767 1 970 1462 44 39 0 chr4 50588996 50589176 -105040944 + B2_Mm2 SINE B2 2 188 -7 1 970 3230 265 65 22 chr4 50589176 50589219 -105040901 - Lx7 LINE L1 -930 6766 6737 1 970 399 21 0 0 chr4 50589219 50589267 -105040853 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 970 3230 265 65 22 chr4 50589267 50589909 -105040211 - Lx7 LINE L1 -960 6736 6071 1 970 323 329 21 42 chr4 50590020 50590258 -105039862 + L1MC3 LINE L1 4785 5017 -1129 1 970 351 333 45 0 chr4 50590283 50590415 -105039705 - B1F1 SINE Alu -11 138 1 1 970 248 345 33 60 chr4 50590488 50590639 -105039481 - B3 SINE B2 0 216 70 1 970 189 0 0 0 chr4 50590664 50590685 -105039435 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 970 1605 278 63 35 chr4 50591069 50591558 -105038562 - Lx9 LINE L1 -741 6903 6401 1 970 940 278 79 22 chr4 50591642 50591958 -105038162 + Lx9 LINE L1 7057 7390 -254 1 970 657 85 0 0 chr4 50592021 50592127 -105037993 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 970 297 0 0 0 chr4 50592127 50592159 -105037961 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 970 425 321 129 13 chr4 50592227 50592606 -105037514 + L1MC3 LINE L1 5293 5715 -2070 1 970 263 341 168 5 chr4 50592701 50593075 -105037045 + L1MC3 LINE L1 6010 6444 -1341 1 970 943 289 23 60 chr4 50593116 50593400 -105036720 + MTE2b LTR MaLR 5 290 -89 1 970 1198 119 22 0 chr4 50593400 50593585 -105036535 - B2_Mm2 SINE B2 -4 191 3 1 970 943 289 23 60 chr4 50593585 50593686 -105036434 + MTE2b LTR MaLR 291 376 -3 1 121 440 302 124 60 chr4 50593705 50594174 -105035946 + L1MC3 LINE L1 6732 7230 -555 1 971 555 298 64 12 chr4 50594183 50594356 -105035764 - RLTR19 LTR ERVK 0 499 318 1 971 465 252 22 105 chr4 50594417 50594608 -105035512 - RLTR19 LTR ERVK -185 311 1 1 971 1019 287 30 79 chr4 50595553 50595946 -105034174 + MTEb LTR MaLR 6 379 0 1 971 233 268 14 0 chr4 50597342 50597413 -105032707 - L1M2 LINE L1 -503 5794 5723 1 971 21 0 0 0 chr4 50597646 50597667 -105032453 + AT_rich Low_complexity Low_complexity 1 21 0 1 971 4580 72 0 10 chr4 50597753 50598358 -105031762 - L1Md_F2 LINE L1 -13 6569 5971 1 971 465 302 108 23 chr4 50598696 50598872 -105031248 - RMER30 DNA MER1_type -5 197 7 1 971 23 33 0 0 chr4 50598922 50598952 -105031168 + AT_rich Low_complexity Low_complexity 1 30 0 1 971 567 29 0 0 chr4 50599424 50599493 -105030627 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 971 372 71 0 0 chr4 50599494 50599550 -105030570 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 971 180 275 96 55 chr4 50599741 50599814 -105030306 - L2c LINE L2 -220 3167 3092 1 971 7927 43 11 0 chr4 50600210 50601182 -105028938 - L1Md_F3 LINE L1 -14 6570 5588 1 971 341 167 13 0 chr4 50601407 50601485 -105028635 - Lx2A1 LINE L1 0 7008 6930 1 971 4248 161 24 4 chr4 50601511 50602341 -105027779 - L1VL4 LINE L1 -518 3041 2195 1 971 4282 128 21 5 chr4 50602322 50603378 -105026742 - L1VL4 LINE L1 -1985 1574 499 1 971 5091 100 45 0 chr4 50603973 50604710 -105025410 + Lx3_Mus LINE L1 6240 7009 0 1 971 306 0 0 0 chr4 50604898 50604932 -105025188 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 1 971 396 328 109 66 chr4 50605118 50605513 -105024607 - MLT2C2 LTR ERVL -48 416 5 1 971 569 27 0 13 chr4 50606284 50606360 -105023760 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 971 396 0 0 0 chr4 50607242 50607286 -105022834 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 971 1129 78 0 29 chr4 50607287 50607458 -105022662 - L1Md_F2 LINE L1 -12 6570 6405 1 971 312 342 56 40 chr4 50607891 50608016 -105022104 - RSINE1 SINE B4 -31 134 8 1 971 227 55 0 53 chr4 50608943 50608981 -105021139 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 971 28 48 0 0 chr4 50609080 50609122 -105020998 + AT_rich Low_complexity Low_complexity 1 42 0 1 971 22 0 0 0 chr4 50609203 50609225 -105020895 + AT_rich Low_complexity Low_complexity 1 22 0 1 971 269 282 33 33 chr4 50609225 50609346 -105020774 - Lx2 LINE L1 -19 6978 6858 1 971 2252 195 27 4 chr4 50609338 50609821 -105020299 + Lx2B LINE L1 3590 4083 -1794 1 971 291 233 76 114 chr4 50609821 50610005 -105020115 - RLTR8 LTR ERVK 0 365 188 1 971 8017 164 42 81 chr4 50610201 50612945 -105017175 + Lx2B LINE L1 4079 6694 -306 1 971 22 35 0 0 chr4 50613385 50613414 -105016706 + AT_rich Low_complexity Low_complexity 1 29 0 1 971 2074 124 110 11 chr4 50613734 50613935 -105016185 + L1_Mm LINE L1 3633 3841 -2042 1 971 450 0 0 0 chr4 50613935 50613985 -105016135 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 971 2074 124 110 11 chr4 50613985 50614165 -105015955 + L1_Mm LINE L1 3842 4051 -1832 1 971 1331 316 111 35 chr4 50614368 50615160 -105014960 + Lx9 LINE L1 6603 7454 -190 1 971 24 0 0 0 chr4 50616324 50616348 -105013772 + AT_rich Low_complexity Low_complexity 1 24 0 1 971 26 64 0 0 chr4 50616508 50616555 -105013565 + AT_rich Low_complexity Low_complexity 1 47 0 1 971 605 327 64 35 chr4 50616920 50617202 -105012918 - RLTR18B LTR ERVK -23 489 200 1 971 647 343 20 54 chr4 50617255 50617551 -105012569 - RLTR18 LTR ERVK -318 298 13 1 971 21 0 0 0 chr4 50618969 50618990 -105011130 + AT_rich Low_complexity Low_complexity 1 21 0 1 971 459 0 0 0 chr4 50619081 50619132 -105010988 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 971 483 18 0 0 chr4 50620327 50620383 -105009737 + (CAGAG)n Simple_repeat Simple_repeat 1 56 0 1 971 1069 80 0 0 chr4 50620463 50620600 -105009520 + B1_Mus1 SINE Alu 2 138 -10 1 971 345 24 0 0 chr4 50620601 50620643 -105009477 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 1 971 22 0 0 0 chr4 50621118 50621140 -105008980 + AT_rich Low_complexity Low_complexity 1 22 0 1 971 345 47 0 0 chr4 50621404 50621447 -105008673 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 971 333 156 0 0 chr4 50621478 50621555 -105008565 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 1 971 266 0 29 0 chr4 50622161 50622195 -105007925 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 971 18311 86 0 2 chr4 50622359 50624900 -105005220 + L1Md_F2 LINE L1 3050 5586 -297 1 971 7196 82 15 10 chr4 50624900 50625891 -105004229 + L1Md_F2 LINE L1 5587 6582 0 1 971 28 71 0 0 chr4 50625925 50625981 -105004139 + AT_rich Low_complexity Low_complexity 1 56 0 1 971 921 233 75 46 chr4 50626087 50626474 -105003646 - RMER6A LTR ERVK -4 716 456 1 971 1828 257 74 18 chr4 50626690 50627205 -105002915 - Lx2B LINE L1 -89 6911 6368 1 971 386 216 0 0 chr4 50627185 50627282 -105002838 - L1VL2 LINE L1 -5359 976 880 1 971 451 317 99 4 chr4 50627394 50627657 -105002463 + L1MA9 LINE L1 5713 6000 -312 1 971 396 314 149 16 chr4 50627965 50628068 -105002052 - LTR16E2 LTR ERVL -1 567 439 1 971 459 0 0 0 chr4 50628068 50628119 -105002001 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 1 971 396 314 149 16 chr4 50628119 50628209 -105001911 - LTR16E2 LTR ERVL -130 438 348 1 971 1129 52 0 0 chr4 50628209 50628345 -105001775 + L1_Mm LINE L1 5471 5606 -277 1 971 5430 53 0 3 chr4 50628345 50629022 -105001098 + L1Md_F2 LINE L1 5896 6570 -12 1 971 542 244 12 24 chr4 50629022 50629049 -105001071 + L1M5 LINE L1 5636 5661 -783 1 971 1163 73 0 16 chr4 50632023 50632205 -104997915 + L1Md_F3 LINE L1 6406 6584 0 1 971 567 0 0 0 chr4 50632237 50632300 -104997820 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 971 4211 193 80 70 chr4 50633293 50634386 -104995734 + RLTR25A LTR ERVK 1 1103 0 1 971 3519 20 0 0 chr4 50634894 50635290 -104994830 + MTA_Mm LTR MaLR 1 396 0 1 971 27 49 0 0 chr4 50635313 50635354 -104994766 + AT_rich Low_complexity Low_complexity 1 41 0 1 971 21 57 0 0 chr4 50635415 50635450 -104994670 + AT_rich Low_complexity Low_complexity 1 35 0 1 971 1029 309 44 33 chr4 50635806 50636195 -104993925 - Lx8 LINE L1 -153 7320 6928 1 971 229 347 22 97 chr4 50636243 50636428 -104993692 - MLT1A0 LTR MaLR -185 180 10 1 971 7870 51 2 1 chr4 50636456 50637795 -104992325 - L1Md_F2 LINE L1 0 6582 5241 1 971 35721 56 1 3 chr4 50637794 50644022 -104986098 - L1Md_A LINE L1 -1 6584 268 1 971 21 36 0 0 chr4 50644205 50644233 -104985887 + AT_rich Low_complexity Low_complexity 1 28 0 1 971 708 279 134 43 chr4 50645463 50645924 -104984196 - L1M2 LINE L1 -1192 4951 4449 1 971 396 267 37 0 chr4 50646614 50646775 -104983345 - Lx9 LINE L1 -1 7643 7477 1 971 549 192 8 23 chr4 50646828 50646956 -104983164 + Lx9 LINE L1 7352 7477 -167 1 971 1251 284 0 31 chr4 50647968 50648292 -104981828 + Lx5 LINE L1 6726 7039 -11 1 971 457 272 22 7 chr4 50648359 50648496 -104981624 + Lx9 LINE L1 7299 7437 -207 1 971 239 0 32 0 chr4 50648515 50648546 -104981574 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 971 298 237 26 13 chr4 50649263 50649340 -104980780 + PB1D9 SINE Alu 42 119 -1 2 971 1425 152 16 25 chr4 50649340 50649583 -104980537 + Lx2B LINE L1 6485 6725 -275 2 971 5143 60 1 0 chr4 50649586 50650236 -104979884 + L1Md_F2 LINE L1 4936 5586 -297 2 971 8497 25 1 1 chr4 50650236 50651232 -104978888 + L1Md_F2 LINE L1 5587 6582 0 2 971 1017 155 241 0 chr4 50651232 50651464 -104978656 + Lx2A1 LINE L1 6719 7006 -2 2 971 295 290 60 0 chr4 50651682 50651782 -104978338 - LTR40b LTR ERVL -26 436 331 2 971 2729 196 99 3 chr4 50651853 50652420 -104977700 + Lx4B LINE L1 6101 6721 -337 2 971 525 247 109 23 chr4 50652430 50652604 -104977516 + Lx4B LINE L1 6866 7054 -4 2 971 870 125 0 0 chr4 50652606 50652750 -104977370 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 2 971 244 194 29 43 chr4 50653194 50653264 -104976856 + MTE2a LTR MaLR 311 379 0 2 971 1166 110 71 6 chr4 50654504 50654687 -104975433 + L1_Mus2 LINE L1 6369 6563 -3 2 971 415 343 77 50 chr4 50654746 50655148 -104974972 - HERVL40-int LTR ERVL -1142 4388 3976 2 971 714 319 54 18 chr4 50655548 50655880 -104974240 - MER67C LTR ERV1 -306 405 62 2 971 441 0 0 0 chr4 50655885 50655934 -104974186 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 971 378 0 0 0 chr4 50655934 50655975 -104974145 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 971 198 193 0 0 chr4 50656771 50656828 -104973292 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 2 971 266 291 16 33 chr4 50656828 50656949 -104973171 + CT-rich Low_complexity Low_complexity 5 123 0 2 971 272 310 0 14 chr4 50657886 50657958 -104972162 - HERVL40-int LTR ERVL -4170 1360 1290 2 971 275 146 0 18 chr4 50659230 50659286 -104970834 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 971 195 295 0 0 chr4 50661162 50661223 -104968897 - L2b LINE L2 -5 3370 3310 2 971 316 342 155 15 chr4 50661715 50662035 -104968085 - MLT1A0 LTR MaLR 0 365 1 2 971 184 366 102 22 chr4 50662157 50662294 -104967826 - MIR SINE MIR -98 164 17 2 971 232 392 9 0 chr4 50663487 50663594 -104966526 - MLT1L LTR MaLR -82 528 421 2 971 261 139 0 0 chr4 50664106 50664149 -104965971 + (A)n Simple_repeat Simple_repeat 1 43 0 2 971 573 343 39 16 chr4 50664350 50664614 -104965506 + B4A SINE B4 4 284 -8 2 971 1663 132 57 63 chr4 50664769 50665100 -104965020 - ORR1A4 LTR MaLR 0 329 1 2 971 210 278 0 0 chr4 50665438 50665492 -104964628 + GA-rich Low_complexity Low_complexity 4 57 0 2 971 376 124 0 43 chr4 50665794 50665887 -104964233 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 2 971 400 391 69 22 chr4 50665893 50666254 -104963866 + MLT1F2 LTR MaLR 171 548 -12 2 971 749 321 70 11 chr4 50666548 50666819 -104963301 + B4 SINE B4 6 292 0 2 971 666 284 77 36 chr4 50667089 50667337 -104962783 - B4A SINE B4 -29 263 6 2 971 27 49 0 0 chr4 50667463 50667504 -104962616 + AT_rich Low_complexity Low_complexity 1 41 0 2 971 327 49 0 0 chr4 50667650 50667691 -104962429 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 2 971 1123 102 6 6 chr4 50667691 50667869 -104962251 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 2 971 4242 136 13 7 chr4 50668284 50668978 -104961142 - Lx2 LINE L1 0 6997 6300 2 971 511 294 23 13 chr4 50669748 50669928 -104960192 + ID_B1 SINE B4 41 223 -69 2 971 435 394 54 0 chr4 50670875 50671078 -104959042 + ID_B1 SINE B4 2 215 -9 2 971 26 0 0 0 chr4 50671224 50671250 -104958870 + AT_rich Low_complexity Low_complexity 1 26 0 2 971 265 281 0 19 chr4 50671718 50671851 -104958269 - L1_Mur3 LINE L1 -1809 4071 3946 2 971 4871 175 58 16 chr4 50671942 50672910 -104957210 + Lx4B LINE L1 6042 7050 -8 2 971 30 27 0 0 chr4 50673207 50673244 -104956876 + AT_rich Low_complexity Low_complexity 1 37 0 2 971 265 211 0 0 chr4 50673386 50673438 -104956682 - Lx7 LINE L1 -384 7312 7261 2 971 29 28 0 0 chr4 50673513 50673549 -104956571 + AT_rich Low_complexity Low_complexity 1 36 0 2 971 372 43 0 0 chr4 50673918 50673964 -104956156 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 971 34 0 0 0 chr4 50674193 50674227 -104955893 + AT_rich Low_complexity Low_complexity 1 34 0 2 971 1712 87 20 61 chr4 50674227 50674520 -104955600 - Lx3_Mus LINE L1 0 7009 6729 2 971 3066 82 26 0 chr4 50674523 50674940 -104955180 + Lx3_Mus LINE L1 6272 6699 -310 2 971 238 243 40 0 chr4 50674989 50675063 -104955057 + CT-rich Low_complexity Low_complexity 3 79 0 2 971 1425 278 37 66 chr4 50675134 50675283 -104954837 - Lx9 LINE L1 -15 7629 7503 2 971 741 79 0 0 chr4 50675283 50675384 -104954736 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 2 971 1425 278 37 66 chr4 50675384 50675917 -104954203 - Lx9 LINE L1 -142 7502 6967 2 971 1220 284 44 10 chr4 50675958 50676342 -104953778 - Lx9 LINE L1 -790 6854 6458 2 971 348 326 10 0 chr4 50676344 50676442 -104953678 - PB1D10 SINE Alu 0 117 19 2 971 324 318 158 25 chr4 50677197 50677400 -104952720 - MLT2B4 LTR ERVL -8 548 319 2 971 227 116 0 80 chr4 50677430 50677505 -104952615 + T-rich Low_complexity Low_complexity 2 70 0 2 971 210 105 0 0 chr4 50677886 50677924 -104952196 + (T)n Simple_repeat Simple_repeat 1 38 0 2 971 21 57 0 0 chr4 50678412 50678447 -104951673 + AT_rich Low_complexity Low_complexity 1 35 0 2 971 227 93 0 23 chr4 50679296 50679340 -104950780 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 971 1170 226 44 69 chr4 50679393 50680036 -104950084 + L1VL2 LINE L1 132 741 -2875 2 971 1662 155 25 4 chr4 50680030 50680308 -104949812 + Lx2 LINE L1 6152 6435 -565 2 971 2636 117 40 19 chr4 50680308 50680862 -104949258 + RLTR13D4 LTR ERVK 1 885 -148 2 971 663 76 439 0 chr4 50680865 50680997 -104949123 + B2_Mm2 SINE B2 1 190 -5 2 971 236 158 0 0 chr4 50680997 50681035 -104949085 + GA-rich Low_complexity Low_complexity 1 38 0 2 971 677 45 11 0 chr4 50681035 50681124 -104948996 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 2 971 840 169 45 7 chr4 50681136 50681291 -104948829 + RLTR13D4 LTR ERVK 873 1033 0 2 971 3233 174 14 12 chr4 50681291 50681856 -104948264 + Lx2 LINE L1 6431 6996 -1 2 971 232 162 0 0 chr4 50683038 50683075 -104947045 + Lx4B LINE L1 6895 6931 -127 2 971 450 0 0 0 chr4 50683076 50683126 -104946994 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 971 34 0 0 0 chr4 50683128 50683162 -104946958 + AT_rich Low_complexity Low_complexity 1 34 0 2 971 887 268 123 7 chr4 50684400 50684989 -104945131 + Lx6 LINE L1 5903 6847 -613 2 971 418 238 118 8 chr4 50685295 50685422 -104944698 - MTD LTR MaLR 0 419 279 2 971 249 278 14 0 chr4 50685409 50685481 -104944639 - MTD LTR MaLR -338 81 9 2 971 279 0 0 0 chr4 50685677 50685708 -104944412 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 971 21 36 0 0 chr4 50685719 50685747 -104944373 + AT_rich Low_complexity Low_complexity 1 28 0 2 971 29 22 0 21 chr4 50686695 50686725 -104943395 + AT_rich Low_complexity Low_complexity 1 30 0 2 971 1089 109 0 0 chr4 50686725 50686872 -104943248 + B1_Mus1 SINE Alu 2 148 0 2 971 29 22 0 21 chr4 50686872 50686888 -104943232 + AT_rich Low_complexity Low_complexity 1 16 0 2 971 423 56 0 0 chr4 50689509 50689563 -104940557 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 971 24 53 0 0 chr4 50689778 50689816 -104940304 + AT_rich Low_complexity Low_complexity 1 38 0 2 971 581 156 130 8 chr4 50690043 50690166 -104939954 - B1_Mur4 SINE Alu -8 142 5 2 971 4323 172 29 199 chr4 50690216 50691052 -104939068 - L1_Mur2 LINE L1 -1589 4288 3739 2 971 1072 110 0 0 chr4 50691052 50691197 -104938923 - B1_Mus2 SINE Alu 0 147 3 2 971 4323 172 29 199 chr4 50691197 50691922 -104938198 - L1_Mur2 LINE L1 -2139 3738 2992 2 971 1268 113 123 78 chr4 50691941 50692209 -104937911 - L1_Mus2 LINE L1 0 6566 6287 2 971 373 141 14 14 chr4 50692207 50692279 -104937841 + L1_Mm LINE L1 4397 4468 -1415 2 971 5185 127 24 2 chr4 50692290 50693096 -104937024 + Lx3A LINE L1 6154 6976 -5 2 971 450 320 136 42 chr4 50693516 50693803 -104936317 - MER20B DNA MER1_type 0 783 470 2 971 3162 127 16 24 chr4 50694185 50694686 -104935434 - Lx LINE L1 -4 6650 6154 2 971 21 0 0 0 chr4 50695409 50695430 -104934690 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 5269 151 21 26 chr4 50696014 50696945 -104933175 + Lx3B LINE L1 5976 6902 -71 2 971 892 306 78 19 chr4 50697621 50698161 -104931959 - L1MC1 LINE L1 -180 6153 5582 2 971 344 136 17 0 chr4 50698157 50698216 -104931904 - Lx4B LINE L1 -1245 5813 5754 2 971 1145 147 117 18 chr4 50698212 50698434 -104931686 + Lx4A LINE L1 6808 7051 -7 2 971 490 277 42 6 chr4 50698495 50698662 -104931458 - L1MC1 LINE L1 -741 5592 5420 2 971 375 287 38 89 chr4 50699138 50699295 -104930825 - L2c LINE L2 -1 3386 3238 2 971 27 49 0 0 chr4 50700097 50700138 -104929982 + AT_rich Low_complexity Low_complexity 1 41 0 2 971 235 229 0 16 chr4 50700212 50700274 -104929846 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 971 3584 46 5 2 chr4 50700358 50700793 -104929327 - RLTR10C LTR ERVK 0 436 1 2 971 45293 11 0 0 chr4 50700793 50705823 -104924297 - MMERVK10C-int LTR ERVK 0 7581 2552 2 971 381 95 0 0 chr4 50705829 50705892 -104924228 - MMERVK10C-int LTR ERVK -5634 1947 1885 2 971 309 172 17 0 chr4 50705899 50705957 -104924163 - MMERVK10C-int LTR ERVK -5627 1779 1721 2 971 659 238 128 47 chr4 50705939 50706325 -104923795 - MMERVK10C-int LTR ERVK -4956 450 314 2 971 881 152 4 177 chr4 50706415 50706686 -104923434 - MMERVK10C-int LTR ERVK -6629 952 729 2 971 2828 50 0 0 chr4 50706684 50707027 -104923093 - MMERVK10C-int LTR ERVK -7238 343 1 2 971 3584 46 5 2 chr4 50707027 50707462 -104922658 - RLTR10C LTR ERVK 0 436 1 2 971 271 296 0 0 chr4 50707575 50707629 -104922491 - B4 SINE B4 -237 55 2 2 971 343 277 52 37 chr4 50707850 50707985 -104922135 + L1MA8 LINE L1 6103 6239 -52 2 971 308 333 31 0 chr4 50708661 50708790 -104921330 + Lx8 LINE L1 6851 6983 -490 2 971 555 362 5 50 chr4 50708810 50709031 -104921089 - B4A SINE B4 -63 229 19 2 971 686 194 0 35 chr4 50709373 50709517 -104920603 + RMER19C LTR ERVK 473 611 0 2 971 1348 195 144 9 chr4 50709517 50709863 -104920257 + MurERV4_19-int LTR ERVK 1 393 -5387 2 971 2501 142 29 83 chr4 50710059 50710612 -104919508 + MurERV4_19-int LTR ERVK 4689 5211 -569 2 971 3574 60 17 11 chr4 50710748 50711222 -104918898 - L1Md_F3 LINE L1 0 6584 6108 2 971 631 295 120 24 chr4 50711277 50711551 -104918569 + RMER19C LTR ERVK 76 348 -263 2 971 1154 290 53 48 chr4 50711753 50712417 -104917703 - L1MA5 LINE L1 -332 5968 5302 2 971 37712 19 2 7 chr4 50712930 50718315 -104911805 + L1Md_A LINE L1 235 5586 -297 2 971 8613 22 0 0 chr4 50718315 50719355 -104910765 + L1Md_A LINE L1 5587 6582 0 2 971 326 385 56 25 chr4 50719482 50719767 -104910353 + L1M4 LINE L1 5493 5786 -398 2 971 804 251 26 79 chr4 50719847 50720076 -104910044 - ORR1D2 LTR MaLR -153 217 1 2 971 392 291 89 69 chr4 50720087 50720493 -104909627 + L1MCa LINE L1 1499 1912 -4596 2 971 1894 236 0 12 chr4 50721278 50721685 -104908435 + MTC LTR MaLR 6 407 -14 3 971 3283 244 50 24 chr4 50721689 50722525 -104907595 + MTC-int LTR MaLR 1 859 -399 3 971 2027 145 3 3 chr4 50722525 50722836 -104907284 - RLTR10E LTR ERVK 0 311 1 3 971 3283 244 50 24 chr4 50722836 50722847 -104907273 + MTC-int LTR MaLR 860 870 -388 3 121 28404 83 6 4 chr4 50722851 50726931 -104903189 - MMERVK10C-int LTR ERVK -16 7664 3552 3 972 1682 68 301 8 chr4 50726927 50727187 -104902933 - MMERVK10C-int LTR ERVK -4515 3066 2730 3 972 4201 80 0 29 chr4 50727185 50727763 -104902357 - MMERVK10C-int LTR ERVK -5136 2445 1885 3 972 347 198 121 24 chr4 50727754 50727837 -104902283 - MMERVK10C-int LTR ERVK -5109 1028 938 3 972 2824 144 55 34 chr4 50727840 50728685 -104901435 - MMERVK10C-int LTR ERVK -6713 868 323 3 972 1315 134 0 9 chr4 50728778 50728989 -104901131 - MMERVK10C-int LTR ERVK -7151 430 222 3 972 234 238 0 0 chr4 50728989 50729031 -104901089 - RLTR27 LTR ERVK -37 272 231 3 972 681 100 30 0 chr4 50729031 50729131 -104900989 - MMERVK10C-int LTR ERVK -7478 103 1 3 972 1910 152 3 3 chr4 50729139 50729442 -104900678 - RLTR10E LTR ERVK -8 303 1 3 972 852 223 86 9 chr4 50729443 50729665 -104900455 + MTC-int LTR MaLR 856 1094 -164 3 972 3912 137 27 47 chr4 50729708 50730411 -104899709 - Lx3B LINE L1 -5 6968 6280 3 972 329 215 43 0 chr4 50730416 50730509 -104899611 + MTC-int LTR MaLR 1069 1165 -93 3 972 312 0 20 40 chr4 50730688 50730738 -104899382 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 972 371 189 110 11 chr4 50730879 50730970 -104899150 + MTC-int LTR MaLR 1159 1258 0 3 972 1703 232 31 48 chr4 50730970 50731390 -104898730 + MTC LTR MaLR 1 413 -8 3 972 243 241 185 25 chr4 50731410 50731491 -104898629 - RLTR28B LTR ERVL -14 510 417 3 972 686 271 36 6 chr4 50731613 50731780 -104898340 - RLTR28B LTR ERVL -295 186 15 3 972 201 147 0 0 chr4 50732904 50732938 -104897182 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 972 548 329 58 52 chr4 50733136 50733667 -104896453 - L1MA4A LINE L1 -372 5931 5402 3 972 1018 109 0 13 chr4 50733667 50733816 -104896304 - B1_Mus2 SINE Alu 0 147 1 3 972 548 333 67 57 chr4 50733816 50734043 -104896077 - L1MA4A LINE L1 -902 5401 5124 3 972 267 190 0 37 chr4 50734269 50734351 -104895769 + (CAAA)n Simple_repeat Simple_repeat 4 82 0 3 972 3507 174 69 21 chr4 50734672 50735400 -104894720 + RMER12 LTR ERVK 1 763 -559 3 972 243 0 0 0 chr4 50735400 50735427 -104894693 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 972 770 215 33 52 chr4 50735446 50735657 -104894463 + RMER12 LTR ERVK 988 1194 -128 3 972 314 301 25 66 chr4 50735696 50735817 -104894303 + RMER12 LTR ERVK 1112 1227 -95 3 972 430 370 59 8 chr4 50736051 50736441 -104893679 - Lx9 LINE L1 -176 7468 7059 3 972 22 35 0 0 chr4 50736472 50736501 -104893619 + AT_rich Low_complexity Low_complexity 1 29 0 3 972 1625 95 13 4 chr4 50736532 50736765 -104893355 - L1_Mus1 LINE L1 0 6567 6333 3 972 1176 185 32 57 chr4 50736765 50737046 -104893074 + RLTR46 LTR ERVK 47 320 0 3 972 11938 101 29 2 chr4 50737049 50739290 -104890830 - L1_Mus1 LINE L1 -217 6350 4045 3 972 22 56 0 0 chr4 50739312 50739348 -104890772 + AT_rich Low_complexity Low_complexity 1 36 0 3 972 1307 144 182 36 chr4 50739971 50740261 -104889859 + RMER6C LTR ERVK 1 335 -355 3 972 617 69 0 11 chr4 50740261 50740349 -104889771 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 3 972 1307 208 22 15 chr4 50740349 50740481 -104889639 + RMER6C LTR ERVK 322 567 -123 3 972 314 213 0 0 chr4 50740492 50740553 -104889567 + RMER6C LTR ERVK 630 690 0 3 972 363 360 38 61 chr4 50740590 50740748 -104889372 - Lx9 LINE L1 -926 6718 6577 3 972 1959 199 249 4 chr4 50740748 50741302 -104888818 - RMER6C LTR ERVK 0 690 1 3 972 363 360 38 61 chr4 50741302 50741436 -104888684 - Lx9 LINE L1 -1068 6576 6434 3 972 1369 290 25 16 chr4 50741567 50742194 -104887926 - Lx9 LINE L1 -1390 6083 5434 3 972 397 277 105 22 chr4 50742350 50742579 -104887541 - Lx9 LINE L1 -1342 4538 4291 3 972 396 0 0 0 chr4 50742648 50742692 -104887428 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 972 198 0 0 0 chr4 50742692 50742713 -104887407 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 972 309 191 15 0 chr4 50742971 50743039 -104887081 + L1_Mur1 LINE L1 4955 5023 -863 3 972 880 206 6 17 chr4 50743049 50743227 -104886893 + Lx5 LINE L1 6216 6391 -659 3 972 810 344 63 16 chr4 50743757 50744076 -104886044 + MTE2b LTR MaLR 2 335 -44 3 972 573 323 33 29 chr4 50744546 50744820 -104885300 + Lx8 LINE L1 6850 7124 -349 3 972 188 237 0 0 chr4 50745421 50745459 -104884661 + MIR SINE MIR 202 239 -23 3 972 243 224 43 0 chr4 50746438 50746450 -104883670 + ORR1B1-int LTR MaLR 634 650 -859 3 972 867 43 26 0 chr4 50746450 50746565 -104883555 + B1_Mm SINE Alu 1 118 -29 3 972 976 67 89 0 chr4 50746720 50746855 -104883265 + B1_Mus1 SINE Alu 2 148 0 3 972 195 69 0 0 chr4 50746855 50746884 -104883236 + (A)n Simple_repeat Simple_repeat 1 29 0 3 972 198 324 0 56 chr4 50747047 50747119 -104883001 - L4 LINE RTE -7 2022 1955 3 972 6651 192 38 9 chr4 50748012 50749604 -104880516 - Lx5 LINE L1 -1 7049 5403 3 972 2851 222 73 24 chr4 50749604 50750304 -104879816 + RMER19B LTR ERVK 1 677 -225 3 972 4970 165 74 18 chr4 50750304 50751364 -104878756 - L1_Mur2 LINE L1 -885 4992 3874 3 972 26 64 0 0 chr4 50751925 50751972 -104878148 + AT_rich Low_complexity Low_complexity 1 47 0 3 972 24 0 0 0 chr4 50752105 50752129 -104877991 + AT_rich Low_complexity Low_complexity 1 24 0 3 972 22 0 0 0 chr4 50752445 50752467 -104877653 + AT_rich Low_complexity Low_complexity 1 22 0 3 972 779 367 27 9 chr4 50752568 50753013 -104877107 - RMER15-int LTR ERVL -3753 1246 794 3 972 3404 89 41 16 chr4 50753014 50753574 -104876546 + MusHAL1 LINE L1 350 923 -1789 3 972 332 264 0 42 chr4 50753712 50753807 -104876313 - PB1D10 SINE Alu 0 117 27 3 972 31 26 0 0 chr4 50754691 50754729 -104875391 + AT_rich Low_complexity Low_complexity 1 38 0 3 972 4636 39 0 2 chr4 50755242 50755802 -104874318 - L1Md_F2 LINE L1 -14 6568 6010 3 972 309 62 30 30 chr4 50756262 50756328 -104873792 + (TTTTTG)n Simple_repeat Simple_repeat 6 71 0 3 972 1120 82 0 7 chr4 50756328 50756476 -104873644 - B1_Mus2 SINE Alu 0 147 1 3 972 350 139 0 11 chr4 50756584 50756671 -104873449 + (TTA)n Simple_repeat Simple_repeat 2 87 0 3 972 9302 126 50 1 chr4 50757855 50759478 -104870642 + L1Md_F LINE L1 373 2070 -3813 3 972 207 0 0 0 chr4 50759478 50759501 -104870619 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 972 9302 102 7 1 chr4 50759501 50760025 -104870095 + L1Md_F LINE L1 2071 2603 -3280 3 972 615 252 15 0 chr4 50760027 50760158 -104869962 + ETnERV2-int LTR ERVK 7070 7202 -204 3 972 6343 71 55 48 chr4 50760565 50761092 -104869028 + L1_Mus1 LINE L1 5287 5841 -726 3 972 235 254 0 17 chr4 50761092 50761152 -104868968 + MLT1B LTR MaLR 70 128 -262 3 972 6343 71 55 48 chr4 50761152 50761839 -104868281 + L1_Mus1 LINE L1 5842 6566 -1 3 972 25 51 0 0 chr4 50762389 50762428 -104867692 + AT_rich Low_complexity Low_complexity 1 39 0 3 972 1415 189 14 94 chr4 50762799 50763139 -104866981 + ORR1B1 LTR MaLR 1 369 -25 3 972 1679 244 62 13 chr4 50763547 50764017 -104866103 + Lx7 LINE L1 5629 6121 -1575 3 972 3455 122 7 4 chr4 50764028 50764614 -104865506 - Lx2 LINE L1 -910 6087 5507 3 972 5511 127 11 19 chr4 50764614 50765488 -104864632 + Lx2 LINE L1 6119 6985 -12 3 972 5626 253 22 38 chr4 50765493 50766867 -104863253 + Lx6 LINE L1 6105 7456 -4 3 972 237 328 47 98 chr4 50767369 50767562 -104862558 + B2_Mm2 SINE B2 2 184 -11 3 972 631 294 58 32 chr4 50767660 50768039 -104862081 + L1MC LINE L1 2359 2747 -3399 3 972 321 100 0 0 chr4 50768273 50768323 -104861797 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 972 401 116 0 14 chr4 50768384 50768454 -104861666 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 972 280 302 80 28 chr4 50768496 50768745 -104861375 + L1MC LINE L1 3095 3356 -2790 3 972 378 292 153 52 chr4 50768858 50769165 -104860955 + L1MA6 LINE L1 5685 6022 -278 3 972 29 60 0 0 chr4 50769250 50769300 -104860820 + AT_rich Low_complexity Low_complexity 1 50 0 3 972 723 264 33 1 chr4 50770089 50770269 -104859851 + B3A SINE B2 31 215 -1 3 972 342 0 0 0 chr4 50770541 50770579 -104859541 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 972 843 342 19 11 chr4 50770827 50771193 -104858927 + Lx8 LINE L1 6347 6715 -758 3 972 655 361 26 8 chr4 50771720 50771985 -104858135 + MTE2a LTR MaLR 19 288 -91 3 972 202 221 0 14 chr4 50772388 50772457 -104857663 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 972 373 172 0 21 chr4 50772457 50772552 -104857568 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 972 183 80 0 0 chr4 50772605 50772630 -104857490 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 3 972 8973 119 6 13 chr4 50772991 50774530 -104855590 - Lx3A LINE L1 -2 6979 5460 3 972 217 116 0 44 chr4 50774681 50774726 -104855394 + T-rich Low_complexity Low_complexity 1 43 0 3 972 486 33 0 0 chr4 50775244 50775304 -104854816 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 972 268 382 9 0 chr4 50776407 50776517 -104853603 - MLT1H-int LTR MaLR -512 897 787 3 972 2143 168 12 8 chr4 50776855 50777256 -104852864 - Lx3B LINE L1 -6 6967 6565 3 972 564 315 0 47 chr4 50777304 50777454 -104852666 + RSINE1 SINE B4 2 144 -21 3 972 423 0 0 0 chr4 50777460 50777507 -104852613 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 972 441 0 0 0 chr4 50777507 50777555 -104852565 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 972 2255 96 83 24 chr4 50777771 50778144 -104851976 + L1_Mus3 LINE L1 6238 6632 -6 3 972 543 112 0 0 chr4 50778166 50778255 -104851865 + (CA)n Simple_repeat Simple_repeat 1 89 0 3 972 433 277 142 26 chr4 50778693 50779004 -104851116 - L1M2 LINE L1 -1125 5018 4672 3 972 434 317 151 17 chr4 50779100 50779392 -104850728 - L1M2 LINE L1 -1656 4487 4157 3 972 210 37 0 0 chr4 50779402 50779429 -104850691 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 972 299 275 48 29 chr4 50779429 50779534 -104850586 - L1M2 LINE L1 -1980 4163 4057 3 972 195 377 44 0 chr4 50779639 50779753 -104850367 + MIR SINE MIR 129 247 -15 3 972 25 0 0 0 chr4 50781043 50781068 -104849052 + AT_rich Low_complexity Low_complexity 1 25 0 3 972 564 174 111 45 chr4 50781068 50781267 -104848853 - Lx9 LINE L1 -2 7642 7431 3 972 180 77 0 0 chr4 50782095 50782121 -104847999 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 972 238 325 99 33 chr4 50782468 50782589 -104847531 - MLT1A1 LTR MaLR 0 408 280 3 972 1149 61 7 0 chr4 50782778 50782925 -104847195 - B1_Mus1 SINE Alu 0 148 1 3 972 3883 2 0 0 chr4 50782956 50783387 -104846733 - L1Md_A LINE L1 -1 6581 6151 3 972 608 211 97 0 chr4 50783454 50783639 -104846481 - RMER1A Other Other 0 1030 828 3 972 658 78 11 0 chr4 50783653 50783743 -104846377 - L1_Mus3 LINE L1 -107 6531 6441 3 972 225 171 0 0 chr4 50783932 50783973 -104846147 + Lx5 LINE L1 5352 5392 -485 3 972 21 57 0 0 chr4 50784091 50784126 -104845994 + AT_rich Low_complexity Low_complexity 1 35 0 3 972 36 53 0 0 chr4 50784210 50784267 -104845853 + AT_rich Low_complexity Low_complexity 1 57 0 3 972 245 326 109 22 chr4 50784331 50784560 -104845560 - Lx9 LINE L1 -193 7451 7203 3 972 302 228 0 0 chr4 50785941 50785998 -104844122 + MLT2B4 LTR ERVL 9 65 -491 3 972 3210 250 61 35 chr4 50786403 50787112 -104843008 + Lx5 LINE L1 5542 6299 -751 3 972 3130 54 8 0 chr4 50787112 50787504 -104842616 + MTA_Mm LTR MaLR 2 396 0 3 972 3210 278 187 13 chr4 50787504 50788190 -104841930 + Lx5 LINE L1 6300 7321 -139 3 972 737 147 66 0 chr4 50788359 50788495 -104841625 + URR1A DNA MER1_type 81 225 -1 3 972 2666 298 64 29 chr4 50788571 50788772 -104841348 + Lx6 LINE L1 6286 6512 -948 4 972 188 34 0 33 chr4 50788772 50788802 -104841318 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 972 2666 298 64 29 chr4 50788802 50788883 -104841237 + Lx6 LINE L1 6513 6587 -873 4 972 369 0 0 0 chr4 50788883 50788924 -104841196 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 972 2666 295 52 29 chr4 50788924 50789604 -104840516 + Lx6 LINE L1 6588 7542 -154 4 972 738 158 1 3 chr4 50789729 50789857 -104840263 - RLTR13D4 LTR ERVK -680 126 1 4 972 2225 238 134 19 chr4 50790347 50790921 -104839199 + Lx6 LINE L1 6786 7425 -35 4 972 22 35 0 0 chr4 50790921 50790950 -104839170 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 31 58 0 0 chr4 50791005 50791057 -104839063 + AT_rich Low_complexity Low_complexity 1 52 0 4 972 220 380 9 17 chr4 50791268 50791383 -104838737 + B1F2 SINE Alu 36 149 0 4 972 740 273 35 55 chr4 50791961 50792217 -104837903 - Lx7 LINE L1 -276 7420 7170 4 972 580 234 112 42 chr4 50792182 50792441 -104837679 + Lx7 LINE L1 7418 7694 -2 4 972 29 0 0 0 chr4 50792446 50792475 -104837645 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 2557 212 114 58 chr4 50793050 50793386 -104836734 + RMER17A2 LTR ERVK 7 481 -425 4 972 1002 81 17 0 chr4 50793386 50793558 -104836562 + (TC)n Simple_repeat Simple_repeat 2 176 0 4 972 2557 156 24 26 chr4 50793558 50793970 -104836150 + RMER17A2 LTR ERVK 482 904 -2 4 972 189 74 0 0 chr4 50793970 50793997 -104836123 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 972 428 95 36 54 chr4 50794003 50794114 -104836006 - Lx LINE L1 0 6654 6546 4 972 2067 136 3 0 chr4 50794114 50794424 -104835696 - Lx LINE L1 -445 6209 5899 4 972 283 297 21 42 chr4 50794574 50794718 -104835402 - L1M3 LINE L1 -589 5600 5460 4 972 527 322 32 9 chr4 50794832 50795173 -104834947 - L1M2 LINE L1 -689 5611 5263 4 972 358 358 54 18 chr4 50796253 50796421 -104833699 + B3 SINE B2 9 182 -34 4 972 611 294 14 0 chr4 50798129 50798275 -104831845 - B1_Mur2 SINE Alu -1 148 1 4 972 23 54 0 0 chr4 50798529 50798566 -104831554 + AT_rich Low_complexity Low_complexity 1 37 0 4 972 4075 141 9 10 chr4 50798791 50799480 -104830640 + L1_Mus4 LINE L1 5948 6635 -1 4 972 5984 251 62 44 chr4 50800094 50800628 -104829492 + Lx7 LINE L1 5490 6034 -1662 4 972 3763 84 2 2 chr4 50800628 50801138 -104828982 + L1_Mus4 LINE L1 6121 6630 -6 4 972 5984 257 68 59 chr4 50801138 50802643 -104827477 + Lx7 LINE L1 6035 7525 -171 4 972 242 29 29 0 chr4 50802643 50802678 -104827442 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 972 5984 257 68 59 chr4 50802678 50802821 -104827299 + Lx7 LINE L1 7526 7693 -3 4 972 249 57 0 0 chr4 50803172 50803207 -104826913 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 972 269 253 55 0 chr4 50803248 50803339 -104826781 - L1M4 LINE L1 -661 5513 5418 4 972 207 0 0 0 chr4 50803623 50803646 -104826474 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 972 471 355 20 46 chr4 50803894 50804089 -104826031 - B3A SINE B2 -6 192 3 4 972 8007 36 2 1 chr4 50804191 50805416 -104824704 - L1Md_T LINE L1 -2 6580 5354 4 972 757 270 78 34 chr4 50805454 50805926 -104824194 - L1M4 LINE L1 -1428 4718 4226 4 972 37 76 0 0 chr4 50806572 50806651 -104823469 + AT_rich Low_complexity Low_complexity 1 79 0 4 972 3435 134 5 13 chr4 50806894 50807447 -104822673 - L1_Mus4 LINE L1 0 6636 6088 4 972 1117 47 0 1 chr4 50807447 50807600 -104822520 + L1_Mus3 LINE L1 5919 6076 -508 4 972 247 83 0 0 chr4 50807584 50807620 -104822500 + L1_Mus3 LINE L1 6036 6071 -567 4 972 28 0 0 0 chr4 50807750 50807778 -104822342 + AT_rich Low_complexity Low_complexity 1 28 0 4 972 1780 202 67 42 chr4 50808066 50808499 -104821621 + Lx LINE L1 6211 6654 0 4 972 1110 73 0 0 chr4 50808535 50808672 -104821448 - L1_Mus1 LINE L1 -325 6242 6106 4 972 2500 70 0 15 chr4 50808672 50809007 -104821113 + L1_Mus1 LINE L1 6234 6563 -4 4 972 984 180 0 23 chr4 50810585 50810761 -104819359 - ORR1A4 LTR MaLR -8 321 150 4 972 1392 56 0 0 chr4 50810761 50810939 -104819181 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 972 404 37 0 18 chr4 50810939 50810994 -104819126 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 4 972 3280 150 37 9 chr4 50811035 50811599 -104818521 - Lx3B LINE L1 0 6973 6394 4 972 492 63 0 0 chr4 50811599 50811662 -104818458 + Lx3C LINE L1 6334 6396 -580 4 972 722 215 0 124 chr4 50811662 50811848 -104818272 - ORR1A4 LTR MaLR -166 163 1 4 972 2384 313 9 72 chr4 50812183 50812741 -104817379 - Lx6 LINE L1 -13 7447 6906 4 972 3664 134 22 3 chr4 50812741 50813327 -104816793 + Lx LINE L1 6058 6654 0 4 972 2384 313 9 72 chr4 50813327 50813711 -104816409 - Lx6 LINE L1 -555 6905 6564 4 972 2438 213 25 29 chr4 50813703 50814331 -104815789 + L1_Mur3 LINE L1 4937 5562 -318 4 972 846 367 76 7 chr4 50814955 50815493 -104814627 - Lx8 LINE L1 -25 7448 6874 4 972 638 290 44 33 chr4 50815584 50815766 -104814354 - B3 SINE B2 -30 186 3 4 972 509 349 23 23 chr4 50815820 50816037 -104814083 + B4 SINE B4 7 223 -69 4 972 180 111 0 0 chr4 50816051 50816078 -104814042 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 972 280 316 0 0 chr4 50816093 50816150 -104813970 + B4 SINE B4 216 272 -20 4 972 285 75 0 0 chr4 50816173 50816213 -104813907 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 972 599 209 7 58 chr4 50816700 50816837 -104813283 - B1_Mur2 SINE Alu -11 138 9 4 972 456 104 0 0 chr4 50817506 50817573 -104812547 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 972 333 0 0 0 chr4 50817573 50817610 -104812510 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 972 21 0 0 0 chr4 50818054 50818075 -104812045 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 287 219 31 0 chr4 50818353 50818417 -104811703 + Lx8 LINE L1 5830 5895 -1578 4 972 227 284 61 47 chr4 50818596 50818744 -104811376 + Lx8 LINE L1 6129 6278 -1195 4 972 4035 192 23 1 chr4 50818779 50819552 -104810568 - Lx3C LINE L1 -215 6761 5972 4 972 923 236 49 120 chr4 50819553 50819901 -104810219 - MT2A LTR ERVL -136 465 1 4 972 334 129 14 0 chr4 50820073 50820143 -104809977 + Lx2 LINE L1 6927 6997 0 4 972 1009 206 28 23 chr4 50820188 50820406 -104809714 + MTC LTR MaLR 1 219 -202 4 972 1611 331 85 41 chr4 50820422 50821535 -104808585 - Lx8 LINE L1 -558 6915 5754 4 972 297 0 0 0 chr4 50822444 50822477 -104807643 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 972 4812 128 24 32 chr4 50822669 50823477 -104806643 + Lx3B LINE L1 6170 6970 -3 4 972 39 60 0 0 chr4 50823478 50823545 -104806575 + AT_rich Low_complexity Low_complexity 1 67 0 4 972 268 304 0 0 chr4 50823558 50823627 -104806493 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 4 972 212 0 36 0 chr4 50823630 50823658 -104806462 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 972 27 49 0 0 chr4 50823824 50823865 -104806255 + AT_rich Low_complexity Low_complexity 1 41 0 4 972 999 136 17 22 chr4 50824141 50824311 -104805809 - L1_Mus3 LINE L1 -177 6461 6291 4 972 1419 99 14 5 chr4 50824311 50824525 -104805595 + L1_Mus3 LINE L1 6417 6632 -6 4 972 25 0 0 0 chr4 50824546 50824571 -104805549 + AT_rich Low_complexity Low_complexity 1 25 0 4 972 21 95 0 0 chr4 50824988 50825051 -104805069 + AT_rich Low_complexity Low_complexity 1 63 0 4 972 7048 80 8 19 chr4 50825130 50826442 -104803678 - L1_Mus1 LINE L1 0 6567 5267 4 972 426 300 7 13 chr4 50826439 50826591 -104803529 - Lx8 LINE L1 -590 6883 6733 4 972 390 285 42 18 chr4 50826593 50826761 -104803359 - L1M2 LINE L1 -688 5612 5441 4 972 21 0 0 0 chr4 50826920 50826941 -104803179 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 26 0 0 0 chr4 50827794 50827820 -104802300 + AT_rich Low_complexity Low_complexity 1 26 0 4 972 728 209 12 25 chr4 50827827 50827989 -104802131 - L1_Rod LINE L1 -168 5679 5520 4 972 590 62 0 24 chr4 50827984 50828066 -104802054 - L1_Mus4 LINE L1 -339 6297 6218 4 972 1667 115 129 0 chr4 50828073 50828359 -104801761 + L1_Mus4 LINE L1 6311 6633 -3 4 972 396 0 0 0 chr4 50828607 50828651 -104801469 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 972 1062 63 0 0 chr4 50828785 50828928 -104801192 + (TG)n Simple_repeat Simple_repeat 1 143 0 4 972 851 294 22 53 chr4 50828939 50829259 -104800861 + Lx9 LINE L1 6572 6881 -763 4 972 6747 186 20 24 chr4 50829267 50830682 -104799438 + Lx2B LINE L1 5587 6995 -5 4 972 390 268 35 21 chr4 50830714 50830855 -104799265 + Lx9 LINE L1 6900 7042 -602 4 972 288 0 0 0 chr4 50830856 50830888 -104799232 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 4 972 479 241 37 15 chr4 50830927 50831062 -104799058 + Lx9 LINE L1 7055 7192 -452 4 972 299 25 0 24 chr4 50831123 50831164 -104798956 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 972 549 44 0 0 chr4 50831164 50831231 -104798889 + (TTC)n Simple_repeat Simple_repeat 2 69 0 4 972 278 247 45 64 chr4 50831237 50831393 -104798727 - Lx6 LINE L1 -8 7452 7300 4 972 583 260 14 14 chr4 50831409 50831557 -104798563 + Lx6 LINE L1 7142 7289 -171 4 972 250 295 38 13 chr4 50831546 50831625 -104798495 + Lx9 LINE L1 7266 7346 -298 4 972 635 313 29 88 chr4 50831640 50831983 -104798137 + RLTR11B LTR ERVK 1 323 -130 4 972 416 351 0 37 chr4 50832018 50832154 -104797966 + B3A SINE B2 4 134 -64 4 972 28 48 0 0 chr4 50832187 50832229 -104797891 + AT_rich Low_complexity Low_complexity 1 42 0 4 972 23 0 0 0 chr4 50832536 50832559 -104797561 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 435 178 22 0 chr4 50832746 50832836 -104797284 + Lx3B LINE L1 6879 6970 -3 4 972 34 42 0 0 chr4 50832844 50832892 -104797228 + AT_rich Low_complexity Low_complexity 1 48 0 4 972 203 173 19 0 chr4 50832913 50832965 -104797155 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 4 972 1231 237 54 11 chr4 50832987 50833394 -104796726 - Lx3C LINE L1 -82 6976 6484 4 972 2591 133 0 5 chr4 50833408 50833809 -104796311 - L1_Mus4 LINE L1 -7 6629 6231 4 972 2050 78 0 11 chr4 50833809 50834082 -104796038 - L1_Mus4 LINE L1 -274 6362 6093 4 972 1636 79 22 0 chr4 50834083 50834311 -104795809 + L1_Mus4 LINE L1 5836 6068 -568 4 972 645 229 28 0 chr4 50834298 50834442 -104795678 - Lx3C LINE L1 -555 6503 6356 4 972 266 244 76 61 chr4 50834505 50834636 -104795484 + RLTR25B LTR ERVK 389 521 -507 4 972 849 80 0 0 chr4 50834543 50834655 -104795465 + B1_Mm SINE Alu 33 144 -3 4 972 960 177 43 0 chr4 50834655 50834841 -104795279 + Lx4B LINE L1 6166 6359 -699 4 972 227 268 33 89 chr4 50835005 50835095 -104795025 - MTEb LTR MaLR -292 87 3 4 972 30 0 0 0 chr4 50835196 50835226 -104794894 + AT_rich Low_complexity Low_complexity 1 30 0 4 972 835 135 153 0 chr4 50835430 50835565 -104794555 - RMER6C LTR ERVK -1 689 530 4 972 252 130 0 0 chr4 50835565 50835611 -104794509 + (AACTG)n Simple_repeat Simple_repeat 5 50 0 4 972 835 135 153 0 chr4 50835611 50835645 -104794475 - RMER6C LTR ERVK -161 529 495 4 972 881 172 368 0 chr4 50835697 50835947 -104794173 - RMER6C LTR ERVK -347 343 2 4 972 868 82 0 124 chr4 50838887 50839040 -104791080 + L1_Mus2 LINE L1 6299 6432 -134 4 972 353 312 121 70 chr4 50839097 50839569 -104790551 + L1MEg LINE L1 855 1350 -4734 4 972 253 131 33 0 chr4 50839615 50839676 -104790444 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 972 4355 118 8 1 chr4 50839851 50840520 -104789600 + L1_Mus4 LINE L1 5964 6636 0 5 972 531 0 0 0 chr4 50840917 50840976 -104789144 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 972 206 203 34 0 chr4 50841140 50841199 -104788921 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 972 258 32 0 0 chr4 50841635 50841666 -104788454 + (A)n Simple_repeat Simple_repeat 1 31 0 5 972 3358 79 11 13 chr4 50841706 50842179 -104787941 - Lx3_Mus LINE L1 -15 6994 6523 5 972 257 310 73 61 chr4 50842189 50842436 -104787684 - L1MB8 LINE L1 -13 6165 5916 5 972 459 0 0 0 chr4 50842632 50842683 -104787437 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 972 472 91 34 11 chr4 50842705 50842794 -104787326 - L1_Mus3 LINE L1 -13 6625 6535 5 972 1921 97 0 0 chr4 50842794 50843051 -104787069 - Lx3_Mus LINE L1 -486 6523 6267 5 972 323 161 0 67 chr4 50843617 50843677 -104786443 - RMER6D LTR ERVK -661 59 4 5 972 26 30 0 0 chr4 50844143 50844176 -104785944 + AT_rich Low_complexity Low_complexity 1 33 0 5 972 251 170 0 33 chr4 50844255 50844346 -104785774 + T-rich Low_complexity Low_complexity 1 88 0 5 972 273 372 49 0 chr4 50844425 50844527 -104785593 - B1F SINE Alu -34 115 9 5 972 333 125 0 0 chr4 50845508 50845564 -104784556 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 972 645 264 0 18 chr4 50845578 50845917 -104784203 + (TG)n Simple_repeat Simple_repeat 1 332 0 5 972 797 336 97 20 chr4 50845920 50846356 -104783764 - Lx8 LINE L1 -149 7324 6849 5 972 261 57 0 0 chr4 50846356 50846391 -104783729 + (TTA)n Simple_repeat Simple_repeat 1 35 0 5 972 797 336 97 20 chr4 50846391 50846543 -104783577 - Lx8 LINE L1 -625 6848 6691 5 972 226 342 18 0 chr4 50846711 50846822 -104783298 - L1M2 LINE L1 -374 5929 5817 5 972 325 309 27 0 chr4 50846984 50847133 -104782987 - L1M2 LINE L1 -507 5784 5632 5 972 4685 194 37 13 chr4 50847371 50848349 -104781771 + Lx2B LINE L1 5987 6987 -13 5 972 296 309 0 0 chr4 50848883 50848964 -104781156 - MLT2B2 LTR ERVL -64 498 418 5 972 2577 52 0 3 chr4 50849259 50849585 -104780535 + L1_Mus2 LINE L1 6242 6566 0 5 972 293 345 132 74 chr4 50849664 50849989 -104780131 + ORR1E LTR MaLR 9 352 -7 5 972 452 105 63 0 chr4 50849999 50850094 -104780026 + L1_Mus3 LINE L1 6532 6632 -6 5 972 383 56 19 0 chr4 50850106 50850160 -104779960 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 972 195 321 56 78 chr4 50850791 50850933 -104779187 - MIR SINE MIR 0 262 124 5 972 24 32 0 0 chr4 50851506 50851537 -104778583 + AT_rich Low_complexity Low_complexity 1 31 0 5 972 547 81 23 0 chr4 50852306 50852392 -104777728 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 972 535 182 95 36 chr4 50852392 50852529 -104777591 + B1_Mur3 SINE Alu 5 149 0 5 972 21 0 0 0 chr4 50852773 50852794 -104777326 + AT_rich Low_complexity Low_complexity 1 21 0 5 972 223 152 138 0 chr4 50852921 50853059 -104777061 + (TA)n Simple_repeat Simple_repeat 1 157 0 5 972 271 94 18 123 chr4 50852989 50853159 -104776961 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 5 972 254 367 115 35 chr4 50854056 50854282 -104775838 - MTE-int LTR MaLR -596 984 741 5 972 238 80 20 20 chr4 50854310 50854361 -104775759 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 972 1169 325 75 66 chr4 50854377 50855075 -104775045 - MTE-int LTR MaLR -875 705 2 5 972 231 341 121 45 chr4 50855221 50855353 -104774767 - ORR1E LTR MaLR -208 151 10 5 121 645 208 0 27 chr4 50855914 50856021 -104774099 + polypyrimidine Low_complexity Low_complexity 79 180 0 5 973 1131 75 0 0 chr4 50856021 50856167 -104773953 - B1_Mus1 SINE Alu 0 148 3 5 973 645 208 0 27 chr4 50856167 50856242 -104773878 + polypyrimidine Low_complexity Low_complexity 4 78 0 5 973 342 0 0 0 chr4 50856243 50856281 -104773839 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 5 973 431 294 92 41 chr4 50856296 50856491 -104773629 - ID_B1 SINE B4 -19 205 1 5 973 395 310 99 19 chr4 50856577 50856942 -104773178 + L1MA5 LINE L1 5907 6300 0 5 973 23 33 0 0 chr4 50858067 50858097 -104772023 + AT_rich Low_complexity Low_complexity 1 30 0 5 973 438 225 130 5 chr4 50858175 50858367 -104771753 - Lx9 LINE L1 -26 7618 7403 5 973 563 320 38 27 chr4 50858403 50858586 -104771534 - B4 SINE B4 0 292 108 5 973 180 152 0 0 chr4 50858635 50858668 -104771452 + C-rich Low_complexity Low_complexity 4 36 0 5 973 2176 278 72 165 chr4 50859005 50859626 -104770494 + RLTR22_Mur LTR ERVK 1 597 -1251 5 973 2306 80 45 0 chr4 50859626 50859962 -104770158 + Lx3_Mus LINE L1 6651 7001 -8 5 973 2176 278 72 165 chr4 50859962 50860824 -104769296 + RLTR22_Mur LTR ERVK 598 1360 -488 5 973 504 0 0 0 chr4 50860824 50860880 -104769240 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 973 2176 278 72 165 chr4 50860880 50861223 -104768897 + RLTR22_Mur LTR ERVK 1361 1658 -190 5 973 4394 54 0 0 chr4 50861700 50862241 -104767879 + L1Md_F2 LINE L1 6030 6570 -12 5 973 26 0 0 0 chr4 50862406 50862432 -104767688 + AT_rich Low_complexity Low_complexity 1 26 0 5 973 34 0 0 0 chr4 50862931 50862965 -104767155 + AT_rich Low_complexity Low_complexity 1 34 0 5 973 844 331 34 31 chr4 50863049 50863342 -104766778 - Lx8 LINE L1 -156 7317 7024 5 973 23066 72 18 3 chr4 50863339 50866451 -104763669 + L1Md_F2 LINE L1 2429 5585 -298 5 973 7504 56 20 6 chr4 50866452 50867422 -104762698 + L1Md_F2 LINE L1 5587 6569 -13 5 973 243 0 0 0 chr4 50867434 50867461 -104762659 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 973 345 140 0 0 chr4 50867483 50867540 -104762580 + (A)n Simple_repeat Simple_repeat 1 57 0 5 973 3401 99 4 45 chr4 50867540 50868068 -104762052 + Lx3A LINE L1 6471 6976 -5 5 973 22 0 0 0 chr4 50868069 50868091 -104762029 + AT_rich Low_complexity Low_complexity 1 22 0 5 973 41229 7 0 2 chr4 50868395 50875554 -104754566 - L1Md_A LINE L1 0 6582 1 5 973 545 337 116 20 chr4 50875694 50875995 -104754125 + MLT1D LTR MaLR 7 340 -287 5 973 24 32 0 0 chr4 50876177 50876208 -104753912 + AT_rich Low_complexity Low_complexity 1 31 0 5 973 598 231 154 16 chr4 50876937 50877225 -104752895 - ORR1D1 LTR MaLR 0 370 1 5 973 1401 93 46 9 chr4 50877514 50877732 -104752388 - L1_Mus2 LINE L1 -1 6565 6340 5 973 226 224 20 0 chr4 50878556 50878605 -104751515 + CT-rich Low_complexity Low_complexity 1 50 0 5 973 495 236 15 61 chr4 50879206 50879337 -104750783 + RMER20B LTR ERVK 1 125 -502 5 973 243 305 62 10 chr4 50879534 50879630 -104750490 + RMER20B LTR ERVK 416 516 0 5 973 336 242 0 0 chr4 50879820 50879915 -104750205 + (TA)n Simple_repeat Simple_repeat 1 95 0 5 973 309 271 153 16 chr4 50880540 50880664 -104749456 - L1MA9 LINE L1 -159 6153 6013 5 973 241 385 18 53 chr4 50880778 50880948 -104749172 - RSINE1 SINE B4 0 165 2 5 973 239 305 86 7 chr4 50881033 50881185 -104748935 - Lx8 LINE L1 -1208 6265 6102 5 973 850 266 22 0 chr4 50881235 50881457 -104748663 + Lx8 LINE L1 6319 6545 -928 5 973 407 279 23 8 chr4 50881563 50881693 -104748427 + Lx8 LINE L1 6897 7028 -445 5 973 765 320 19 28 chr4 50881808 50882023 -104748097 + B3 SINE B2 1 213 -3 5 973 410 286 23 16 chr4 50884771 50884899 -104745221 - ID_B1 SINE B4 -17 207 79 5 973 1125 68 7 0 chr4 50885152 50885298 -104744822 + B1_Mus2 SINE Alu 1 147 0 5 973 218 89 0 43 chr4 50885298 50885345 -104744775 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 973 325 320 32 45 chr4 50886015 50886169 -104743951 - L1MD3 LINE L1 -111 6233 6082 5 973 1219 64 6 11 chr4 50886655 50886830 -104743290 - L1Md_F2 LINE L1 0 6582 6409 5 973 509 313 126 14 chr4 50887124 50887633 -104742487 - L1MD3 LINE L1 -2122 5873 5308 5 973 232 400 26 29 chr4 50887693 50887966 -104742154 - L1M4 LINE L1 -5929 613 342 5 973 228 135 0 0 chr4 50889594 50889631 -104740489 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 5 973 22 0 0 0 chr4 50890819 50890841 -104739279 + AT_rich Low_complexity Low_complexity 1 22 0 5 973 979 235 26 74 chr4 50890916 50891306 -104738814 - Lx7 LINE L1 0 7696 7326 5 973 479 256 8 23 chr4 50891370 50891498 -104738622 - Lx7 LINE L1 -365 7331 7206 5 973 1398 242 10 3 chr4 50891516 50891810 -104738310 + ORR1B2 LTR MaLR 46 341 -26 5 973 260 0 0 0 chr4 50891810 50891840 -104738280 - L1_Mus2 LINE L1 -144 6422 6393 5 973 382 125 0 0 chr4 50891844 50891900 -104738220 + ORR1B2 LTR MaLR 312 367 0 5 973 1307 266 0 0 chr4 50891902 50892191 -104737929 - L1_Mur3 LINE L1 -170 5710 5422 5 973 622 256 23 6 chr4 50892183 50892360 -104737760 - L1_Mur3 LINE L1 -6679 1049 870 5 973 6340 214 51 7 chr4 50892347 50893691 -104736429 + Lx5 LINE L1 5646 7047 -3 5 973 190 0 0 62 chr4 50894141 50894173 -104735947 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 5 973 22 0 0 0 chr4 50895005 50895027 -104735093 + AT_rich Low_complexity Low_complexity 1 22 0 5 973 21 57 0 0 chr4 50895421 50895456 -104734664 + AT_rich Low_complexity Low_complexity 1 35 0 5 973 251 302 2 0 chr4 50896046 50896123 -104733997 - MTEa LTR MaLR -26 353 271 5 973 1771 169 19 40 chr4 50897342 50897712 -104732408 - ORR1B2 LTR MaLR -5 362 1 5 973 224 68 96 0 chr4 50898800 50898873 -104731247 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 973 226 304 44 18 chr4 50900801 50900915 -104729205 + Lx9 LINE L1 7521 7637 -7 5 973 239 89 0 22 chr4 50901271 50901317 -104728803 + L1_Mus2 LINE L1 6522 6566 0 5 973 405 0 0 0 chr4 50901504 50901549 -104728571 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 973 1912 231 35 81 chr4 50902718 50903321 -104726799 + RMER15 LTR ERVL 1 575 0 5 973 401 256 39 16 chr4 50903376 50903503 -104726617 - Lx9 LINE L1 -353 7291 7162 5 973 647 271 47 77 chr4 50903504 50904051 -104726069 + L1M3 LINE L1 5189 5719 -449 5 973 1392 6 0 0 chr4 50904099 50904256 -104725864 + (TCTCCC)n Simple_repeat Simple_repeat 4 160 0 5 973 5274 67 3 4 chr4 50904334 50905025 -104725095 - L1Md_F2 LINE L1 -12 6570 5881 5 973 279 79 0 0 chr4 50905025 50905063 -104725057 + L1_Mm LINE L1 4233 4270 -1613 5 973 23 0 0 0 chr4 50905154 50905177 -104724943 + AT_rich Low_complexity Low_complexity 1 23 0 5 973 253 270 0 0 chr4 50905181 50905244 -104724876 + ORR1D2 LTR MaLR 6 68 -302 5 973 486 0 0 0 chr4 50905311 50905365 -104724755 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 973 384 169 0 0 chr4 50905872 50905949 -104724171 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 973 4870 162 11 0 chr4 50906580 50907403 -104722717 - L1_Mm LINE L1 -7 5876 5045 6 973 2017 25 0 0 chr4 50907572 50907808 -104722312 + L1Md_F2 LINE L1 5616 5851 -731 6 973 998 206 13 35 chr4 50907803 50908034 -104722086 - L1_Mm LINE L1 -800 5083 4858 6 973 4771 126 15 5 chr4 50908034 50908778 -104721342 + L1_Mus4 LINE L1 5886 6636 0 6 973 1241 330 64 46 chr4 50908944 50909534 -104720586 - Lx7 LINE L1 -318 7378 6778 6 973 450 0 0 0 chr4 50909609 50909659 -104720461 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 973 732 335 39 64 chr4 50909920 50909940 -104720180 - B4A SINE B4 -5 287 268 6 973 644 36 12 0 chr4 50909940 50910023 -104720097 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 6 973 732 335 39 64 chr4 50910023 50910283 -104719837 - B4A SINE B4 -25 267 14 6 973 240 336 16 25 chr4 50910335 50910457 -104719663 - MLT1B LTR MaLR -8 382 262 6 973 698 197 0 7 chr4 50911618 50911771 -104718349 + (TA)n Simple_repeat Simple_repeat 2 153 0 6 973 510 99 22 11 chr4 50912081 50912152 -104717968 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 973 1129 86 17 0 chr4 50912152 50912327 -104717793 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 973 510 99 22 11 chr4 50912327 50912347 -104717773 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 973 5228 119 77 11 chr4 50912989 50913855 -104716265 - Lx LINE L1 0 6654 5732 6 973 1585 214 53 0 chr4 50913858 50914176 -104715944 - Lx3C LINE L1 -135 6841 6507 6 973 205 51 0 49 chr4 50914180 50914221 -104715899 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 6 973 6134 44 8 0 chr4 50914236 50914990 -104715130 - L1Md_F2 LINE L1 0 6582 5823 6 973 1915 185 5 30 chr4 50914990 50915357 -104714763 - Lx3C LINE L1 -461 6515 6158 6 973 213 39 0 0 chr4 50915674 50915700 -104714420 + (T)n Simple_repeat Simple_repeat 1 26 0 6 973 1135 88 0 0 chr4 50915700 50915847 -104714273 - B1_Mus1 SINE Alu 0 148 2 6 973 27 29 0 0 chr4 50915984 50916018 -104714102 + AT_rich Low_complexity Low_complexity 1 34 0 6 973 1426 218 143 5 chr4 50916485 50916905 -104713215 + Lx9 LINE L1 7166 7643 -1 6 973 414 53 0 0 chr4 50917110 50917167 -104712953 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 973 2883 153 40 31 chr4 50917352 50917899 -104712221 - Lx LINE L1 -12 6642 6091 6 973 1275 151 22 0 chr4 50917899 50918124 -104711996 + Lx LINE L1 5856 6085 -569 6 973 344 392 50 31 chr4 50918264 50918680 -104711440 - L1ME3A LINE L1 -119 6054 5631 6 973 734 79 18 0 chr4 50918702 50918816 -104711304 + (TCTCTG)n Simple_repeat Simple_repeat 4 119 0 6 973 1857 181 27 49 chr4 50919564 50920032 -104710088 - RLTR31_Mm LTR ERVK -151 433 5 6 973 350 337 59 10 chr4 50920396 50920600 -104709520 - L1ME3A LINE L1 -1376 4770 4557 6 973 38 22 0 0 chr4 50920861 50920906 -104709214 + AT_rich Low_complexity Low_complexity 1 45 0 6 973 550 299 0 49 chr4 50920911 50921055 -104709065 - RSINE1 SINE B4 -22 143 7 6 973 898 307 36 25 chr4 50921314 50921672 -104708448 + ORR1D2 LTR MaLR 5 366 -4 6 973 23 68 0 0 chr4 50922823 50922867 -104707253 + AT_rich Low_complexity Low_complexity 1 44 0 6 973 319 155 0 17 chr4 50923173 50923232 -104706888 + L1_Mur2 LINE L1 4581 4638 -1239 6 973 1257 14 0 0 chr4 50923266 50923413 -104706707 + (GAA)n Simple_repeat Simple_repeat 2 148 0 6 973 249 207 17 0 chr4 50923438 50923496 -104706624 - Lx7 LINE L1 -347 7349 7291 6 973 1582 149 9 97 chr4 50923496 50923815 -104706305 - ORR1A2 LTR MaLR -35 291 1 6 973 7982 187 69 70 chr4 50923818 50925770 -104704350 - ORR1A2-int LTR MaLR -13 1950 1 6 973 1641 127 58 115 chr4 50925770 50926117 -104704003 - ORR1A2 LTR MaLR 0 327 1 6 973 295 358 65 18 chr4 50926604 50926772 -104703348 - Kanga1a DNA Tc2 -575 179 4 6 973 21 0 0 0 chr4 50927617 50927638 -104702482 + AT_rich Low_complexity Low_complexity 1 21 0 6 973 681 269 27 18 chr4 50927896 50928116 -104702004 - L1MC3 LINE L1 -299 7486 7265 6 973 375 208 27 90 chr4 50928757 50928772 -104701348 + MT2B LTR ERVL 154 161 -440 6 973 880 142 28 0 chr4 50928772 50928913 -104701207 + B1_Mus2 SINE Alu 3 147 0 6 973 201 39 0 0 chr4 50928913 50928939 -104701181 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 973 252 161 0 0 chr4 50928960 50929022 -104701098 + A-rich Low_complexity Low_complexity 1 62 0 6 973 359 320 101 56 chr4 50931963 50932231 -104697889 + Lx8 LINE L1 6271 6550 -923 6 973 3076 224 33 17 chr4 50932234 50932606 -104697514 + RMER6D LTR ERVK 1 381 -339 6 973 456 19 0 0 chr4 50932606 50932659 -104697461 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 973 3076 224 33 17 chr4 50932659 50932990 -104697130 + RMER6D LTR ERVK 382 714 -6 6 973 1380 307 45 16 chr4 50932995 50933508 -104696612 + Lx8 LINE L1 6548 7075 -398 6 973 336 292 31 10 chr4 50933525 50933622 -104696498 + Lx8 LINE L1 7057 7155 -318 6 973 219 396 19 9 chr4 50933869 50933976 -104696144 + PB1D10 SINE Alu 10 117 0 6 973 258 281 12 24 chr4 50933989 50934073 -104696047 + GA-rich Low_complexity Low_complexity 1 83 0 6 973 4001 13 0 0 chr4 50934481 50934938 -104695182 + L1Md_A LINE L1 6125 6581 -1 6 973 804 21 0 0 chr4 50935138 50935232 -104694888 + (TCTCC)n Simple_repeat Simple_repeat 3 96 0 6 973 1137 132 0 0 chr4 50935247 50935475 -104694645 + (TTC)n Simple_repeat Simple_repeat 1 228 0 6 973 2168 36 25 11 chr4 50936313 50936594 -104693526 + L1Md_F2 LINE L1 5302 5586 -297 6 973 7762 55 5 2 chr4 50936595 50937587 -104692533 + L1Md_F2 LINE L1 5588 6582 0 6 973 24 67 0 0 chr4 50937855 50937900 -104692220 + AT_rich Low_complexity Low_complexity 1 45 0 6 973 226 211 17 133 chr4 50939150 50939270 -104690850 + Tigger13a DNA MER2_type 593 698 -73 6 973 1209 196 29 40 chr4 50940021 50940297 -104689823 - RLTR46 LTR ERVK -6 314 42 6 973 276 161 0 0 chr4 50940365 50940427 -104689693 + CT-rich Low_complexity Low_complexity 1 62 0 6 973 4101 242 78 35 chr4 50940528 50942780 -104687340 + Lx5 LINE L1 4882 7455 -5 6 973 418 224 258 44 chr4 50943402 50943655 -104686465 - Lx7 LINE L1 -19 7677 7403 6 973 483 18 0 0 chr4 50943675 50943731 -104686389 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 973 225 0 0 0 chr4 50943731 50943755 -104686365 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 973 3654 120 13 0 chr4 50943784 50944546 -104685574 - Lx LINE L1 -524 6130 5361 6 973 951 111 0 44 chr4 50944790 50944950 -104685170 - L1_Mus2 LINE L1 -2 6564 6412 6 973 229 133 67 0 chr4 50945002 50945047 -104685073 + L1_Mm LINE L1 3904 3951 -1932 6 973 285 195 10 155 chr4 50945172 50945275 -104684845 + L1VL1 LINE L1 249 336 -6086 6 973 416 283 14 28 chr4 50945428 50945570 -104684550 + L1Md_F LINE L1 670 809 -5807 6 973 4524 143 1 64 chr4 50945572 50946845 -104683275 + L1Md_F LINE L1 725 1904 -3979 6 973 22 70 0 0 chr4 50947374 50947417 -104682703 + AT_rich Low_complexity Low_complexity 1 43 0 6 973 367 19 39 0 chr4 50947490 50947542 -104682578 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 973 247 352 14 0 chr4 50947742 50947813 -104682307 + ID4 SINE ID 9 80 -3 6 973 224 358 24 24 chr4 50947813 50947825 -104682295 + ID_B1 SINE B4 9 91 -133 6 973 21 0 0 0 chr4 50947829 50947850 -104682270 + AT_rich Low_complexity Low_complexity 1 21 0 6 973 22 70 0 0 chr4 50948016 50948059 -104682061 + AT_rich Low_complexity Low_complexity 1 43 0 6 973 21 57 0 0 chr4 50948175 50948210 -104681910 + AT_rich Low_complexity Low_complexity 1 35 0 6 973 459 63 0 0 chr4 50949350 50949413 -104680707 + (CATA)n Simple_repeat Simple_repeat 2 64 0 6 973 315 384 19 5 chr4 50951934 50952146 -104677974 + Lx7 LINE L1 7004 7218 -478 6 973 323 251 40 50 chr4 50952515 50952629 -104677491 + MIRc SINE MIR 63 178 -98 6 973 748 265 19 5 chr4 50952630 50952842 -104677278 + Lx6 LINE L1 6526 6740 -720 6 973 1058 130 6 0 chr4 50952856 50953033 -104677087 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 973 414 0 0 0 chr4 50953033 50953079 -104677041 + (GAAA)n Simple_repeat Simple_repeat 4 49 0 6 973 1393 296 100 13 chr4 50953093 50953545 -104676575 + Lx6 LINE L1 6742 7232 -228 6 973 288 171 60 24 chr4 50953637 50953721 -104676399 + Lx6 LINE L1 7357 7443 -17 6 973 495 0 0 0 chr4 50953721 50953776 -104676344 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 973 832 275 39 29 chr4 50953887 50954168 -104675952 + Lx9 LINE L1 7201 7484 -160 6 973 440 321 15 7 chr4 50955091 50955226 -104674894 - B1_Mur1 SINE Alu -1 148 13 6 973 274 227 13 13 chr4 50955428 50955504 -104674616 - L1_Mur1 LINE L1 -6906 76 1 6 973 6045 103 35 28 chr4 50955519 50956486 -104673634 + Lx3_Mus LINE L1 6036 7009 0 6 973 27 49 0 0 chr4 50956486 50956527 -104673593 + AT_rich Low_complexity Low_complexity 1 41 0 6 973 282 29 0 0 chr4 50956708 50956743 -104673377 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 973 1300 35 11 6 chr4 50956758 50956932 -104673188 + L1Md_F3 LINE L1 6409 6583 -1 6 973 5973 182 18 23 chr4 50957163 50958912 -104671208 + L1VL4 LINE L1 393 2128 -1431 6 973 30767 92 13 53 chr4 50958909 50964346 -104665774 + L1Md_F2 LINE L1 609 5839 -44 6 973 2794 84 8 8 chr4 50964351 50964735 -104665385 + L1Md_F2 LINE L1 6189 6572 -10 6 973 467 127 38 0 chr4 50964770 50964849 -104665271 + Lx2B LINE L1 4413 4494 -1383 6 973 910 122 58 0 chr4 50964897 50965036 -104665084 - B1_Mus2 SINE Alu 0 147 1 6 973 216 86 0 0 chr4 50965132 50965167 -104664953 + (A)n Simple_repeat Simple_repeat 1 35 0 6 973 234 0 0 0 chr4 50965165 50965191 -104664929 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 973 2893 176 19 235 chr4 50965191 50965877 -104664243 + Lx2B LINE L1 4628 5200 -677 6 973 238 307 13 0 chr4 50965877 50965952 -104664168 + B4 SINE B4 12 87 -205 6 973 2893 176 19 235 chr4 50965952 50966372 -104663748 + Lx2B LINE L1 5201 5552 -325 6 973 1457 158 4 0 chr4 50966366 50966606 -104663514 + Lx2B LINE L1 6103 6343 -657 6 973 3089 116 52 16 chr4 50966607 50967122 -104662998 - Lx3_Mus LINE L1 -8 7001 6468 6 973 1894 95 37 13 chr4 50967142 50967440 -104662680 - L1_Mus3 LINE L1 -5 6633 6329 6 973 631 39 0 0 chr4 50967440 50967518 -104662602 + L1_Mus3 LINE L1 6250 6327 -311 6 973 3529 152 50 12 chr4 50967519 50968159 -104661961 + Lx2B LINE L1 6334 6997 -3 6 973 284 0 28 0 chr4 50968205 50968241 -104661879 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 973 324 412 72 0 chr4 50969514 50969708 -104660412 + B4A SINE B4 83 290 -2 6 973 21 36 0 0 chr4 50969761 50969789 -104660331 + AT_rich Low_complexity Low_complexity 1 28 0 6 973 532 254 126 6 chr4 50970227 50970409 -104659711 + Lx6 LINE L1 947 1150 -6578 6 973 1725 261 85 29 chr4 50970406 50970924 -104659196 + Lx6 LINE L1 5832 6378 -1082 6 973 271 204 11 21 chr4 50970926 50971021 -104659099 + T-rich Low_complexity Low_complexity 2 95 0 6 973 3609 260 57 64 chr4 50971021 50971125 -104658995 + Lx6 LINE L1 6392 6485 -975 6 973 1387 80 16 0 chr4 50971125 50971313 -104658807 + B2_Mm2 SINE B2 1 191 -4 6 973 3609 260 57 64 chr4 50971313 50971640 -104658480 + Lx6 LINE L1 6486 6794 -666 6 973 3408 217 101 33 chr4 50971640 50972537 -104657583 + RMER17B LTR ERVK 1 958 0 6 973 3609 260 57 64 chr4 50972537 50973178 -104656942 + Lx6 LINE L1 6795 7457 -3 6 973 247 288 0 0 chr4 50973495 50973568 -104656552 + Lx8 LINE L1 7393 7465 -8 7 973 689 273 56 0 chr4 50973954 50974152 -104655968 + Lx8 LINE L1 6276 6484 -989 7 973 736 320 99 27 chr4 50974217 50974702 -104655418 + Lx8 LINE L1 6580 7099 -374 7 973 4943 172 5 10 chr4 50974999 50975872 -104654248 + Lx2B LINE L1 6130 6997 -3 7 973 689 316 7 22 chr4 50977093 50977368 -104652752 - L1M2 LINE L1 -580 5720 5450 7 973 1357 100 0 5 chr4 50978435 50978636 -104651484 + L1_Mus2 LINE L1 6367 6566 0 7 973 333 321 29 29 chr4 50979236 50979374 -104650746 + Lx8 LINE L1 7002 7139 -334 7 973 895 297 17 40 chr4 50979447 50979798 -104650322 - Lx9 LINE L1 -529 7115 6773 7 973 1332 249 34 67 chr4 50979882 50980389 -104649731 + L1_Rod LINE L1 5274 5763 -84 7 973 975 259 115 83 chr4 50980372 50980607 -104649513 + Lx7 LINE L1 7077 7354 -342 7 973 2250 155 18 0 chr4 50980607 50980993 -104649127 - Lx2 LINE L1 -2 6995 6603 7 973 975 259 115 83 chr4 50980993 50981358 -104648762 + Lx7 LINE L1 7355 7696 0 7 973 23 33 0 0 chr4 50981657 50981687 -104648433 + AT_rich Low_complexity Low_complexity 1 30 0 7 973 712 278 23 0 chr4 50981795 50982011 -104648109 + Lx9 LINE L1 7245 7465 -179 7 973 42 98 0 0 chr4 50982011 50982144 -104647976 + AT_rich Low_complexity Low_complexity 1 133 0 7 973 333 211 67 73 chr4 50982162 50982341 -104647779 + Lx9 LINE L1 7455 7632 -12 7 973 30 45 0 0 chr4 50983763 50983807 -104646313 + AT_rich Low_complexity Low_complexity 1 44 0 7 973 364 246 2 33 chr4 50983909 50984013 -104646107 + Lx7 LINE L1 5638 5766 -534 7 973 210 71 0 0 chr4 50984073 50984101 -104646019 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 7 973 363 23 0 0 chr4 50984108 50984152 -104645968 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 973 934 169 22 0 chr4 50984246 50984424 -104645696 + L1Md_F2 LINE L1 6382 6563 -19 7 973 289 187 23 33 chr4 50985114 50985190 -104644930 + B1_Mus1 SINE Alu 33 109 -11 7 973 21 36 0 0 chr4 50985622 50985650 -104644470 + AT_rich Low_complexity Low_complexity 1 28 0 7 973 27 0 0 0 chr4 50986009 50986036 -104644084 + AT_rich Low_complexity Low_complexity 1 27 0 7 973 5841 132 1 35 chr4 50986039 50986832 -104643288 - Lx LINE L1 -614 6040 5292 7 121 6197 20 0 0 chr4 50986832 50987541 -104642579 - L1Md_A LINE L1 0 6582 5874 7 974 5841 163 2 78 chr4 50987541 50988132 -104641988 - Lx LINE L1 -592 5291 4750 7 974 3552 139 46 0 chr4 50988132 50988716 -104641404 + Lx LINE L1 6038 6648 -6 7 974 695 260 45 21 chr4 50988780 50989022 -104641098 - MT2A LTR ERVL -169 364 82 7 974 621 282 87 57 chr4 50989406 50989808 -104640312 - L1MA7 LINE L1 -5 6286 5873 7 974 313 300 53 95 chr4 50989972 50990329 -104639791 + L1M2 LINE L1 4909 5250 -893 7 974 215 250 83 95 chr4 50990335 50990363 -104639757 + PB1D7 SINE Alu 29 111 -9 7 974 356 161 18 0 chr4 50990363 50990419 -104639701 + ID_B1 SINE B4 159 215 -9 7 974 1184 96 6 0 chr4 50990459 50990636 -104639484 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 7 974 768 68 55 0 chr4 50990673 50990836 -104639284 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 7 974 486 141 0 0 chr4 50990930 50991022 -104639098 - L1_Mus3 LINE L1 0 6638 6547 7 974 2399 231 48 43 chr4 50991028 50991365 -104638755 - Lx7 LINE L1 -1561 6135 5781 7 974 270 0 0 0 chr4 50991365 50991395 -104638725 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 7 974 2399 201 21 100 chr4 50991395 50991778 -104638342 - Lx7 LINE L1 -100 5780 5457 7 974 567 29 0 0 chr4 50991778 50991847 -104638273 + (CTA)n Simple_repeat Simple_repeat 3 71 0 7 974 2399 201 21 100 chr4 50991847 50992084 -104638036 - Lx7 LINE L1 -424 5456 5218 7 974 5691 230 91 53 chr4 50992084 50993760 -104636360 - Lx7 LINE L1 -2492 3388 1652 7 974 378 0 0 0 chr4 50993760 50993802 -104636318 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 7 974 5691 246 70 27 chr4 50993802 50995197 -104634923 - Lx7 LINE L1 -4229 1651 189 7 974 227 217 24 24 chr4 50995341 50995426 -104634694 + Charlie7 DNA MER1_type 2482 2566 -46 7 974 252 0 0 0 chr4 50995832 50995860 -104634260 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 974 180 179 0 0 chr4 50996185 50996224 -104633896 + T-rich Low_complexity Low_complexity 1 39 0 7 974 255 315 0 22 chr4 50996257 50996348 -104633772 + CT-rich Low_complexity Low_complexity 3 91 0 7 974 4875 81 0 8 chr4 50996506 50997165 -104632955 - L1_Mus1 LINE L1 -240 6326 5673 7 974 1489 75 65 17 chr4 50997166 50997396 -104632724 + L1_Mus1 LINE L1 6325 6565 -2 7 974 234 192 58 0 chr4 50997803 50997855 -104632265 + MLT1E2 LTR MaLR 26 80 -547 7 974 627 81 0 0 chr4 50999159 50999245 -104630875 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 7 974 232 256 0 60 chr4 50999246 50999306 -104630814 + polypyrimidine Low_complexity Low_complexity 23 80 0 7 974 1048 97 0 14 chr4 50999306 50999452 -104630668 - B1_Mus1 SINE Alu 0 148 5 7 974 232 256 0 60 chr4 50999452 50999474 -104630646 + polypyrimidine Low_complexity Low_complexity 3 22 0 7 974 1085 291 42 45 chr4 50999476 50999876 -104630244 + MTD LTR MaLR 21 419 0 7 974 553 369 42 42 chr4 51000523 51000902 -104629218 - MTEb LTR MaLR 0 379 1 1 974 441 0 0 0 chr4 51001066 51001115 -104629005 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 974 24 0 0 0 chr4 51001488 51001512 -104628608 + AT_rich Low_complexity Low_complexity 1 24 0 3 974 899 327 30 6 chr4 51001706 51002038 -104628082 + Lx8 LINE L1 6609 6948 -525 4 974 704 332 47 17 chr4 51002125 51002422 -104627698 + Lx8 LINE L1 7070 7375 -98 4 974 23 54 0 0 chr4 51003772 51003809 -104626311 + AT_rich Low_complexity Low_complexity 1 37 0 5 974 259 346 35 5 chr4 51004652 51004855 -104625265 + L1M3 LINE L1 5269 5477 -703 6 974 2266 64 9 13 chr4 51004935 51005252 -104624868 + L1Md_F3 LINE L1 6269 6584 0 7 974 207 100 0 0 chr4 51005275 51005305 -104624815 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 974 307 81 31 31 chr4 51005321 51005385 -104624735 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 9 974 473 262 15 45 chr4 51005415 51005547 -104624573 - B3 SINE B2 -88 128 1 1 974 272 239 195 0 chr4 51005657 51005816 -104624304 - L1MCa LINE L1 -3368 2953 2764 1 974 430 274 122 74 chr4 51006033 51006557 -104623563 - L1MCa LINE L1 -5128 1380 832 1 974 351 333 70 60 chr4 51006896 51007097 -104623023 - L1MCa LINE L1 -6260 248 46 1 974 232 227 97 83 chr4 51007128 51007200 -104622920 + BC1_Mm scRNA scRNA 1 73 -79 1 974 369 0 0 0 chr4 51007215 51007256 -104622864 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 974 450 125 0 0 chr4 51007301 51007381 -104622739 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 974 224 346 13 0 chr4 51009326 51009404 -104620716 - B3 SINE B2 -52 164 86 1 974 1278 88 11 0 chr4 51010367 51010549 -104619571 + L1Md_F2 LINE L1 6384 6567 -15 1 974 4295 81 2 5 chr4 51010549 51011132 -104618988 + L1Md_F2 LINE L1 5006 5586 -297 1 974 7824 50 12 2 chr4 51011132 51012115 -104618005 + L1Md_F2 LINE L1 5587 6579 -3 1 974 31 0 0 0 chr4 51012115 51012146 -104617974 + AT_rich Low_complexity Low_complexity 1 31 0 1 974 553 326 39 6 chr4 51012905 51013084 -104617036 + B3 SINE B2 2 186 -30 1 974 30 0 0 0 chr4 51013361 51013391 -104616729 + AT_rich Low_complexity Low_complexity 1 30 0 2 974 8864 116 39 27 chr4 51013687 51014000 -104616120 + Lx3_Mus LINE L1 5587 5911 -1098 2 974 252 0 0 0 chr4 51014000 51014028 -104616092 + (CCA)n Simple_repeat Simple_repeat 1 28 0 2 974 8864 116 39 27 chr4 51014028 51015120 -104615000 + Lx3_Mus LINE L1 5912 7009 0 2 974 402 351 52 17 chr4 51015817 51016104 -104614016 - L1M2 LINE L1 -777 5366 5070 2 974 6458 109 21 4 chr4 51016229 51017183 -104612937 - Lx3A LINE L1 -138 6843 5874 2 974 395 282 0 12 chr4 51017183 51017269 -104612851 - B1_Mus2 SINE Alu -60 87 3 2 974 34 84 0 0 chr4 51017335 51017418 -104612702 + AT_rich Low_complexity Low_complexity 1 83 0 2 974 30 27 0 0 chr4 51017484 51017521 -104612599 + AT_rich Low_complexity Low_complexity 1 37 0 2 974 242 393 82 0 chr4 51017593 51017728 -104612392 + B1F1 SINE Alu 1 146 -3 2 974 22 0 0 0 chr4 51017823 51017845 -104612275 + AT_rich Low_complexity Low_complexity 1 22 0 2 974 651 13 0 0 chr4 51018093 51018169 -104611951 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 974 537 16 0 0 chr4 51018750 51018812 -104611308 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 974 21 36 0 0 chr4 51018938 51018966 -104611154 + AT_rich Low_complexity Low_complexity 1 28 0 3 974 198 0 0 0 chr4 51019136 51019158 -104610962 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 3 974 1035 100 14 0 chr4 51019161 51019301 -104610819 - B1_Mus1 SINE Alu -6 142 1 3 974 1240 106 76 14 chr4 51019348 51019558 -104610562 - Lx3A LINE L1 -872 6109 5887 3 974 352 299 30 20 chr4 51019558 51019657 -104610463 - PB1D9 SINE Alu -18 102 3 3 974 38 68 0 0 chr4 51019733 51019806 -104610314 + AT_rich Low_complexity Low_complexity 1 73 0 3 974 739 82 0 0 chr4 51019885 51019982 -104610138 - B1_Mus1 SINE Alu -51 97 1 3 974 1040 97 0 33 chr4 51020307 51020433 -104609687 + B2_Mm2 SINE B2 5 130 -65 3 974 4152 29 0 0 chr4 51020433 51020915 -104609205 + LTRIS_Mm LTR ERV1 1 482 0 4 974 1040 97 0 33 chr4 51020915 51020938 -104609182 + B2_Mm2 SINE B2 131 149 -46 3 974 213 39 0 0 chr4 51020939 51020965 -104609155 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 974 311 313 44 62 chr4 51021254 51021414 -104608706 + RSINE1 SINE B4 1 157 -8 4 974 483 298 50 4 chr4 51021519 51021752 -104608368 + L1MC LINE L1 2421 2664 -3482 4 974 10622 141 5 2 chr4 51022820 51024602 -104605518 - L1_Mur2 LINE L1 -869 5017 3231 4 974 1692 191 11 16 chr4 51024595 51024967 -104605153 + L1_Mur2 LINE L1 4994 5363 -514 4 974 40794 11 0 6 chr4 51025167 51031577 -104598543 - L1Md_A LINE L1 0 6582 214 4 974 991 92 35 7 chr4 51031618 51031760 -104598360 - B1_Mus2 SINE Alu 0 147 2 4 974 2593 237 22 4 chr4 51031938 51032484 -104597636 + Lx6 LINE L1 6904 7459 -1 4 974 1592 123 13 0 chr4 51032525 51032760 -104597360 + L1_Mm LINE L1 5360 5597 -286 4 974 366 23 0 0 chr4 51033212 51033255 -104596865 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 974 1453 242 114 38 chr4 51033520 51034101 -104596019 - Lx9 LINE L1 0 7644 7020 5 974 239 305 78 7 chr4 51034170 51034312 -104595808 - L1M2 LINE L1 -777 5523 5372 5 974 423 297 94 11 chr4 51034631 51035051 -104595069 + L1MA6 LINE L1 5825 6279 -21 5 974 5702 62 4 0 chr4 51035663 51036410 -104593710 + L1_Mus1 LINE L1 5837 6567 0 5 974 2191 307 66 58 chr4 51036452 51038243 -104591877 + Lx8 LINE L1 5308 7122 -351 5 974 1066 90 0 7 chr4 51038247 51038393 -104591727 + B1_Mm SINE Alu 2 146 -1 5 974 200 79 0 50 chr4 51038398 51038438 -104591682 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 974 235 396 30 18 chr4 51038438 51038605 -104591515 + Lx8 LINE L1 7110 7278 -195 5 974 513 47 0 0 chr4 51039207 51039271 -104590849 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 974 276 28 0 0 chr4 51040268 51040304 -104589816 + RLTR10B2 LTR ERVK 1 36 -256 5 974 1979 91 84 39 chr4 51040318 51040651 -104589469 + RLTR10B2 LTR ERVK 18 365 0 5 974 21 0 0 0 chr4 51040770 51040791 -104589329 + AT_rich Low_complexity Low_complexity 1 21 0 5 974 4519 124 235 7 chr4 51040991 51041846 -104588274 - Lx LINE L1 0 6654 5605 6 974 376 267 18 18 chr4 51041853 51041870 -104588250 - L1M LINE L1 -2360 5425 5409 6 974 6686 143 20 34 chr4 51041870 51043061 -104587059 - Lx3C LINE L1 -9 6967 5794 6 974 2055 45 4 0 chr4 51043061 51043325 -104586795 - L1_Mm LINE L1 -504 5379 5115 6 974 447 182 0 0 chr4 51043345 51043422 -104586698 + RMER6C LTR ERVK 1 77 -613 6 974 4657 165 13 42 chr4 51043425 51044429 -104585691 - L1_Mur1 LINE L1 -1723 4163 3189 6 974 1263 276 54 42 chr4 51044606 51044714 -104585406 - Lx6 LINE L1 -169 7291 7191 6 974 231 36 0 0 chr4 51044714 51044742 -104585378 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 6 974 1263 276 54 42 chr4 51044742 51045080 -104585040 - Lx6 LINE L1 -270 7190 6840 6 974 2801 194 66 14 chr4 51045087 51045735 -104584385 - RMER6C LTR ERVK -8 682 1 6 974 581 208 0 0 chr4 51045735 51045836 -104584284 - Lx7 LINE L1 -842 6854 6754 6 974 2604 247 50 8 chr4 51045830 51046495 -104583625 - Lx2B LINE L1 -1 6999 6307 7 974 2446 231 102 64 chr4 51046576 51047493 -104582627 - L1_Mur3 LINE L1 -1092 4788 3837 7 974 5194 68 41 1 chr4 51047574 51048262 -104581858 - L1_Mus1 LINE L1 0 6567 5853 7 974 317 242 11 21 chr4 51048264 51048357 -104581763 + L1M3 LINE L1 3614 3705 -2435 7 974 261 347 84 52 chr4 51048655 51048810 -104581310 - MLT1A0 LTR MaLR -42 323 164 7 974 32 67 0 0 chr4 51049332 51049392 -104580728 + AT_rich Low_complexity Low_complexity 1 60 0 7 974 1119 107 0 96 chr4 51050869 51051066 -104579054 - L1_Mus2 LINE L1 0 6566 6389 7 974 3005 84 18 74 chr4 51051066 51051569 -104578551 + IAPLTR2_Mm LTR ERVK 1 475 0 7 974 881 89 176 6 chr4 51051570 51051729 -104578391 + IAPEz-int LTR ERVK 9 194 -6287 7 974 242 294 0 0 chr4 51051729 51051780 -104578340 + RLTR27 LTR ERVK 222 272 -37 7 974 3689 55 1 0 chr4 51051780 51052352 -104577768 + IAPEz-int LTR ERVK 165 662 -5819 7 974 939 59 0 0 chr4 51052352 51052471 -104577649 + IAPEz-int LTR ERVK 1359 1477 -5004 7 974 1846 99 8 0 chr4 51052466 51052718 -104577402 + IAPEz-int LTR ERVK 2244 2497 -5183 7 974 14847 37 5 3 chr4 51052751 51054514 -104575606 + IAPEz-int LTR ERVK 4714 6479 -2 7 974 2974 85 38 30 chr4 51054516 51054987 -104575133 + IAPLTR2_Mm LTR ERVK 1 475 0 7 974 489 92 0 15 chr4 51054987 51055053 -104575067 - L1_Mus2 LINE L1 -172 6394 6330 8 974 1714 67 29 0 chr4 51055033 51055271 -104574849 + L1_Mus2 LINE L1 5824 6068 -498 8 974 22 35 0 0 chr4 51055352 51055381 -104574739 + AT_rich Low_complexity Low_complexity 1 29 0 8 974 7994 174 22 21 chr4 51056205 51058125 -104571995 - Lx2B LINE L1 0 7000 5093 8 974 2049 179 43 28 chr4 51058122 51058967 -104571153 - L1_Mus3 LINE L1 -1565 2349 1533 8 974 677 123 14 61 chr4 51058967 51059114 -104571006 + L1_Mus3 LINE L1 6492 6631 -7 8 974 2527 222 84 47 chr4 51059114 51060065 -104570055 - L1_Mus3 LINE L1 -2369 1545 567 8 974 350 153 0 27 chr4 51060252 51060326 -104569794 + A-rich Low_complexity Low_complexity 4 75 0 8 974 21 36 0 0 chr4 51060435 51060463 -104569657 + AT_rich Low_complexity Low_complexity 1 28 0 8 974 478 372 82 41 chr4 51060498 51060767 -104569353 + B4A SINE B4 11 290 -2 8 974 198 0 0 0 chr4 51062689 51062711 -104567409 + (T)n Simple_repeat Simple_repeat 1 22 0 8 974 411 247 11 33 chr4 51062891 51062983 -104567137 + RMER20B LTR ERVK 35 124 -503 9 974 237 339 89 42 chr4 51063130 51063321 -104566799 + RMER20B LTR ERVK 317 516 0 9 974 2216 62 3 0 chr4 51063705 51063993 -104566127 - L1_Mus1 LINE L1 -1 6566 6278 9 974 432 0 0 0 chr4 51064077 51064125 -104565995 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 974 485 363 71 44 chr4 51064140 51064365 -104565755 - B4A SINE B4 -36 256 26 9 974 393 22 0 0 chr4 51065673 51065719 -104564401 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 974 284 198 98 12 chr4 51065859 51065941 -104564179 + L1_Mur3 LINE L1 4342 4430 -1450 9 974 276 216 67 11 chr4 51065944 51066033 -104564087 + Lx7 LINE L1 7603 7696 0 9 974 241 244 49 0 chr4 51066441 51066523 -104563597 + (CAAA)n Simple_repeat Simple_repeat 3 88 0 9 974 8133 51 0 2 chr4 51067892 51069353 -104560767 - L1Md_F2 LINE L1 0 6582 5147 9 974 5152 88 25 1 chr4 51069353 51070071 -104560049 + L1Md_F2 LINE L1 5845 6579 -3 9 974 1225 326 78 13 chr4 51070192 51070816 -104559304 - Lx8 LINE L1 -651 6822 6158 1 974 308 386 35 116 chr4 51071249 51071422 -104558698 + RSINE1 SINE B4 3 161 -4 1 974 219 161 35 18 chr4 51071459 51071516 -104558604 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 974 3987 92 20 0 chr4 51072086 51072629 -104557491 + L1_Mus1 LINE L1 6013 6566 -1 1 974 253 262 40 46 chr4 51072657 51072704 -104557416 - L1MD LINE L1 -2649 3497 3451 1 974 313 77 0 71 chr4 51072704 51072760 -104557360 + L1MA6 LINE L1 6244 6295 -5 1 974 253 262 40 46 chr4 51072760 51072864 -104557256 - L1MD LINE L1 -2696 3450 3348 1 974 35202 49 2 21 chr4 51072954 51078100 -104552020 + L1Md_A LINE L1 540 5586 -297 1 974 7910 47 12 2 chr4 51078100 51079086 -104551034 + L1Md_A LINE L1 5587 6582 0 1 974 1614 301 34 34 chr4 51079417 51080147 -104549973 - Lx5 LINE L1 -8 7042 6455 1 974 37822 14 0 7 chr4 51080157 51085333 -104544787 + L1Md_A LINE L1 452 5586 -297 1 974 8572 23 0 1 chr4 51085333 51086329 -104543791 + L1Md_A LINE L1 5587 6581 -1 1 974 25 0 0 0 chr4 51086394 51086419 -104543701 + AT_rich Low_complexity Low_complexity 1 25 0 1 974 14455 209 56 19 chr4 51086419 51090582 -104539538 - Lx5 LINE L1 -636 6414 2087 1 974 21 0 0 0 chr4 51090594 51090615 -104539505 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 235 245 43 78 chr4 51090754 51090869 -104539251 - MMSAT4 Satellite Satellite -27 141 31 1 974 23089 79 8 11 chr4 51091070 51093433 -104536687 - L1Md_F2 LINE L1 -2 6580 4209 1 974 327 49 0 0 chr4 51093433 51093474 -104536646 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 974 23089 84 6 16 chr4 51093474 51095078 -104535042 - L1Md_F2 LINE L1 -1675 4208 2641 1 974 185 65 32 0 chr4 51095137 51095168 -104534952 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 974 1039 216 58 61 chr4 51095170 51095515 -104534605 - Lx5 LINE L1 -3801 2079 1736 1 974 24 103 0 0 chr4 51097454 51097541 -104532579 + AT_rich Low_complexity Low_complexity 1 87 0 1 974 251 326 58 0 chr4 51097609 51097695 -104532425 - L2a LINE L2 0 3426 3336 1 974 31 26 0 0 chr4 51098266 51098304 -104531816 + AT_rich Low_complexity Low_complexity 1 38 0 1 974 924 314 26 96 chr4 51099761 51100145 -104529975 - MTEa LTR MaLR -3 376 20 1 974 311 130 56 0 chr4 51100188 51100242 -104529878 - Lx5 LINE L1 -704 6346 6290 1 974 355 174 0 55 chr4 51100242 51100294 -104529826 - ORR1A3 LTR MaLR 0 326 275 1 974 872 44 9 0 chr4 51100294 51100407 -104529713 + (TTTCC)n Simple_repeat Simple_repeat 3 116 0 1 974 355 174 0 55 chr4 51100407 51100427 -104529693 - ORR1A3 LTR MaLR -52 274 259 1 974 479 221 104 59 chr4 51100610 51100745 -104529375 - B1F SINE Alu -8 141 1 1 974 2259 102 51 3 chr4 51100782 51101135 -104528985 - L1_Mus3 LINE L1 -7 6631 6262 1 974 1235 191 64 20 chr4 51101139 51101390 -104528730 - ORR1A3 LTR MaLR -64 262 1 1 974 3287 129 74 129 chr4 51101390 51102118 -104528002 - ORR1A3-int LTR MaLR 0 1963 1276 1 974 3203 195 29 9 chr4 51102143 51102992 -104527128 - Lx5 LINE L1 -755 6295 5424 1 974 228 194 0 139 chr4 51102990 51103062 -104527058 + Lx5 LINE L1 6386 6447 -603 1 974 234 0 0 0 chr4 51103064 51103090 -104527030 + (T)n Simple_repeat Simple_repeat 1 26 0 1 974 1159 75 0 0 chr4 51103090 51103237 -104526883 - B1_Mm SINE Alu 0 147 1 1 974 2102 237 116 11 chr4 51103238 51103789 -104526331 + Lx5 LINE L1 6439 7047 -3 1 974 752 295 9 5 chr4 51104572 51104783 -104525337 + B3 SINE B2 2 213 -3 1 974 21 36 0 0 chr4 51104974 51105002 -104525118 + AT_rich Low_complexity Low_complexity 1 28 0 1 974 521 308 106 14 chr4 51105201 51105274 -104524846 - MTD LTR MaLR 0 419 346 1 974 183 42 0 0 chr4 51105274 51105298 -104524822 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 974 521 308 106 14 chr4 51105298 51105425 -104524695 - MTD LTR MaLR -74 345 203 1 974 396 0 0 0 chr4 51105425 51105469 -104524651 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1 974 621 214 205 25 chr4 51105469 51105639 -104524481 - MTD LTR MaLR -217 202 1 1 974 484 380 19 19 chr4 51108016 51108274 -104521846 - MER2 DNA MER2_type -2 343 86 1 974 1743 81 102 196 chr4 51108529 51108911 -104521209 - ORR1A1 LTR MaLR 0 346 1 1 974 22 56 0 0 chr4 51108932 51108968 -104521152 + AT_rich Low_complexity Low_complexity 1 36 0 1 974 210 37 0 0 chr4 51108981 51109008 -104521112 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 974 24 53 0 0 chr4 51109179 51109217 -104520903 + AT_rich Low_complexity Low_complexity 1 38 0 1 974 213 39 0 0 chr4 51109875 51109901 -104520219 + (T)n Simple_repeat Simple_repeat 1 26 0 1 974 268 411 121 5 chr4 51110219 51110417 -104519703 - B4A SINE B4 -33 259 39 1 974 183 370 87 51 chr4 51110419 51110730 -104519390 + L2a LINE L2 3027 3348 -78 1 974 180 111 0 0 chr4 51111016 51111043 -104519077 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1 974 3160 11 0 39 chr4 51111133 51111515 -104518605 + IAPLTR1_Mm LTR ERVK 1 367 0 1 974 55368 23 17 2 chr4 51111515 51117891 -104512229 + IAPEz-int LTR ERVK 8 6481 0 1 121 3160 11 0 39 chr4 51117891 51118273 -104511847 + IAPLTR1_Mm LTR ERVK 1 367 0 1 975 6177 200 59 17 chr4 51119095 51120778 -104509342 - Lx5 LINE L1 -3 7047 5294 1 975 951 247 184 57 chr4 51120782 51121254 -104508866 - RMER4B LTR ERVK -11 574 43 1 975 270 231 0 19 chr4 51121952 51122005 -104508115 - B3A SINE B2 -145 53 2 1 975 1117 199 201 7 chr4 51122090 51122373 -104507747 + ORR1A1 LTR MaLR 1 338 -8 1 975 559 206 27 4 chr4 51122593 51122718 -104507402 - MTC-int LTR MaLR -918 180 57 1 975 1123 221 27 9 chr4 51122723 51122942 -104507178 - MTC LTR MaLR 0 421 199 1 975 1709 305 118 36 chr4 51122963 51123483 -104506637 - Lx5 LINE L1 -127 7333 6455 1 975 222 37 0 0 chr4 51123483 51123510 -104506610 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 975 1708 293 35 51 chr4 51123510 51123801 -104506319 - Lx5 LINE L1 -715 6745 6243 1 975 1009 225 15 5 chr4 51123809 51124010 -104506110 - MTC LTR MaLR -218 203 1 1 975 449 337 163 20 chr4 51124085 51124336 -104505784 - MTD LTR MaLR -14 405 119 1 975 616 310 62 27 chr4 51125959 51126323 -104503797 - L1M2 LINE L1 -563 5749 5371 1 975 342 0 0 0 chr4 51126323 51126361 -104503759 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 975 1022 301 48 46 chr4 51126805 51127199 -104502921 - MTD LTR MaLR -22 397 3 1 975 274 62 0 0 chr4 51127370 51127418 -104502702 - L1_Mus4 LINE L1 -4 6632 6585 1 975 423 274 97 89 chr4 51127418 51127778 -104502342 - RLTR9A LTR ERVK 0 368 6 1 975 6510 141 16 67 chr4 51127802 51129483 -104500637 - Lx LINE L1 -46 6608 5100 1 975 759 22 0 0 chr4 51129602 51129691 -104500429 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 975 13085 180 126 14 chr4 51131850 51137294 -104492826 + L1_Mus3 LINE L1 549 6638 0 1 975 27 87 0 0 chr4 51137412 51137481 -104492639 + AT_rich Low_complexity Low_complexity 1 69 0 1 975 21 0 0 0 chr4 51137678 51137699 -104492421 + AT_rich Low_complexity Low_complexity 1 21 0 1 975 342 152 21 11 chr4 51138247 51138340 -104491780 + CT-rich Low_complexity Low_complexity 3 96 0 1 975 214 89 21 43 chr4 51139146 51139193 -104490927 + T-rich Low_complexity Low_complexity 2 47 0 1 975 25 0 0 0 chr4 51139284 51139309 -104490811 + AT_rich Low_complexity Low_complexity 1 25 0 1 975 574 291 24 0 chr4 51139743 51139908 -104490212 - B3A SINE B2 -22 176 8 1 975 6841 101 42 8 chr4 51141800 51142813 -104487307 - L1_Mus4 LINE L1 -3 6633 5587 1 975 1654 206 86 3 chr4 51143357 51143717 -104486403 - ORR1B1 LTR MaLR -4 390 1 1 975 373 85 0 0 chr4 51144173 51144220 -104485900 - Lx3_Mus LINE L1 -1194 5815 5769 1 975 7323 110 27 24 chr4 51144220 51145394 -104484726 + Lx3_Mus LINE L1 5832 7009 0 1 975 391 238 184 54 chr4 51145783 51146046 -104484074 - L1M5 LINE L1 -3060 3086 2797 1 975 534 236 94 35 chr4 51146131 51146333 -104483787 + L1Md_F LINE L1 290 503 -6016 1 975 301 228 74 25 chr4 51147779 51147860 -104482260 + B3 SINE B2 127 211 -5 1 975 1247 149 21 94 chr4 51148210 51148550 -104481570 + Lx9 LINE L1 7323 7637 -7 1 975 1101 88 0 0 chr4 51148783 51148930 -104481190 - B1_Mus1 SINE Alu 0 148 2 1 975 222 118 0 0 chr4 51149078 51149112 -104481008 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 975 21 0 0 0 chr4 51149683 51149704 -104480416 + AT_rich Low_complexity Low_complexity 1 21 0 1 975 3579 188 17 4 chr4 51149753 51150373 -104479747 - L1_Mur2 LINE L1 -625 5252 4624 1 975 393 22 0 0 chr4 51150373 51150419 -104479701 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 1 975 3579 188 17 4 chr4 51150419 51150494 -104479626 - L1_Mur2 LINE L1 -1254 4623 4549 1 975 4452 237 67 56 chr4 51150493 51152126 -104477994 + Lx5 LINE L1 5247 7054 -4 1 975 203 267 0 0 chr4 51152209 51152254 -104477866 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 975 4481 114 28 19 chr4 51152608 51153331 -104476789 - Lx LINE L1 0 6654 5926 1 975 353 232 139 14 chr4 51153343 51153487 -104476633 - L1MB2 LINE L1 -198 5973 5812 1 975 331 303 134 8 chr4 51153492 51153738 -104476382 - Lx9 LINE L1 -1 7643 7367 1 975 477 255 20 20 chr4 51153799 51153951 -104476169 - Lx9 LINE L1 -229 7415 7264 1 975 324 0 0 0 chr4 51153988 51154024 -104476096 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 975 294 319 123 55 chr4 51154036 51154182 -104475938 - B3A SINE B2 -42 156 1 1 975 25 65 0 0 chr4 51154975 51155021 -104475099 + AT_rich Low_complexity Low_complexity 1 46 0 1 975 275 343 82 58 chr4 51155185 51155442 -104474678 - ORR1D2 LTR MaLR -1 369 107 1 975 447 251 42 42 chr4 51155579 51155834 -104474286 + L1M2 LINE L1 3175 3429 -2711 1 975 241 297 134 76 chr4 51157107 51157145 -104472975 - B2_Mm2 SINE B2 0 195 162 1 975 279 0 0 0 chr4 51157145 51157176 -104472944 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 975 241 297 134 76 chr4 51157176 51157294 -104472826 - B2_Mm2 SINE B2 -34 161 30 1 975 261 273 100 88 chr4 51158266 51158459 -104471661 - MTEa LTR MaLR -13 366 147 1 975 24 53 0 0 chr4 51158890 51158928 -104471192 + AT_rich Low_complexity Low_complexity 1 38 0 1 975 483 301 16 0 chr4 51158940 51159063 -104471057 - RSINE1 SINE B4 -6 159 35 1 975 378 0 0 0 chr4 51159474 51159516 -104470604 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 975 1544 258 58 2 chr4 51161047 51161444 -104468676 - MTD LTR MaLR 0 419 1 1 975 23 33 0 0 chr4 51161538 51161568 -104468552 + AT_rich Low_complexity Low_complexity 1 30 0 1 975 363 360 53 61 chr4 51161635 51161863 -104468257 - MLT1C LTR MaLR -55 412 187 1 975 1313 88 34 14 chr4 51161964 51162172 -104467948 - L1Md_F2 LINE L1 0 6582 6371 1 975 436 88 0 0 chr4 51162172 51162229 -104467891 + L1_Mus2 LINE L1 6174 6230 -336 1 975 3178 55 3 0 chr4 51162346 51162730 -104467390 - IAPEY_LTR LTR ERVK 0 385 1 1 975 21 0 0 0 chr4 51162983 51163004 -104467116 + AT_rich Low_complexity Low_complexity 1 21 0 1 975 384 296 18 53 chr4 51163071 51163221 -104466899 + RMER5 LTR ERV1 93 235 -299 1 975 989 113 14 0 chr4 51163221 51163363 -104466757 + B1_Mus1 SINE Alu 4 147 -1 2 975 384 296 18 53 chr4 51163363 51163383 -104466737 + RMER5 LTR ERV1 236 256 -278 1 975 379 270 26 26 chr4 51163420 51163534 -104466586 + RMER5 LTR ERV1 230 343 -191 1 975 938 99 7 34 chr4 51163558 51163704 -104466416 - B1_Mus1 SINE Alu -2 146 5 2 975 6887 69 16 7 chr4 51164015 51164932 -104465188 - L1Md_F2 LINE L1 -3 6579 5654 2 975 22 80 0 0 chr4 51167051 51167101 -104463019 + AT_rich Low_complexity Low_complexity 1 50 0 2 975 1618 218 217 29 chr4 51167289 51167843 -104462277 - RMER6C LTR ERVK -29 661 4 2 975 1554 242 194 39 chr4 51167935 51168450 -104461670 - RMER19B LTR ERVK 0 902 308 2 975 442 170 41 6 chr4 51168480 51168652 -104461468 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 975 22 0 0 0 chr4 51168715 51168737 -104461383 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 327 313 35 31 chr4 51168972 51169229 -104460891 - L1MB5 LINE L1 -282 5892 5635 2 975 23 0 0 0 chr4 51169496 51169519 -104460601 + AT_rich Low_complexity Low_complexity 1 23 0 2 975 15955 81 7 1 chr4 51171116 51173305 -104456815 + L1Md_F2 LINE L1 3380 5583 -300 2 975 7209 88 3 1 chr4 51173308 51174290 -104455830 + L1Md_F2 LINE L1 5587 6570 -12 2 975 180 97 0 0 chr4 51174408 51174439 -104455681 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 975 970 122 0 0 chr4 51174442 51174589 -104455531 - B1_Mus1 SINE Alu 0 148 2 2 975 30 27 0 0 chr4 51174790 51174827 -104455293 + AT_rich Low_complexity Low_complexity 1 37 0 2 975 6045 161 8 16 chr4 51174843 51175153 -104454967 - Lx2 LINE L1 -14 6983 6679 2 975 237 33 0 0 chr4 51175153 51175183 -104454937 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 975 6045 161 8 16 chr4 51175183 51175960 -104454160 - Lx2 LINE L1 -319 6678 5904 2 975 194 0 39 0 chr4 51175960 51175986 -104454134 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2 975 1631 133 46 6 chr4 51175990 51176093 -104454027 - Lx2 LINE L1 -664 5974 5861 2 975 351 0 0 0 chr4 51176093 51176132 -104453988 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 2 975 1631 134 46 7 chr4 51176132 51176387 -104453733 - Lx2 LINE L1 -297 5876 5631 2 975 304 338 25 44 chr4 51176489 51176647 -104453473 - B4A SINE B4 -137 155 1 2 975 446 299 57 28 chr4 51176918 51177059 -104453061 + RSINE1 SINE B4 5 149 -16 2 975 347 194 0 9 chr4 51177236 51177345 -104452775 + GA-rich Low_complexity Low_complexity 2 109 0 2 975 816 139 0 0 chr4 51177417 51177575 -104452545 + (TTC)n Simple_repeat Simple_repeat 2 159 0 2 975 45 19 0 0 chr4 51177799 51177851 -104452269 + AT_rich Low_complexity Low_complexity 1 52 0 2 975 186 167 0 0 chr4 51177852 51177888 -104452232 + GA-rich Low_complexity Low_complexity 2 37 0 2 975 447 19 0 0 chr4 51177904 51177956 -104452164 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 975 366 23 0 0 chr4 51177957 51178000 -104452120 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 975 876 244 84 34 chr4 51178001 51178264 -104451856 + ORR1C2 LTR MaLR 109 384 0 2 975 237 70 163 0 chr4 51178303 51178346 -104451774 - L1_Mur2 LINE L1 -1164 4713 4664 2 975 6336 117 18 2 chr4 51178351 51179324 -104450796 - Lx3_Mus LINE L1 -8 7001 6014 2 975 3618 178 5 3 chr4 51179316 51179980 -104450140 + Lx LINE L1 5989 6653 -1 2 975 818 184 3 101 chr4 51180050 51180269 -104449851 + RMER17C LTR ERVK 1 192 -218 2 975 384 111 0 0 chr4 51180269 51180332 -104449788 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 2 975 818 184 3 101 chr4 51180332 51180409 -104449711 + RMER17C LTR ERVK 193 267 -143 2 975 189 107 0 0 chr4 51180409 51180437 -104449683 + (CATA)n Simple_repeat Simple_repeat 3 30 0 2 975 192 77 0 0 chr4 51180450 51180476 -104449644 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 2 975 953 89 7 0 chr4 51180480 51180626 -104449494 + (GAAAA)n Simple_repeat Simple_repeat 5 151 0 2 975 347 321 64 64 chr4 51180644 51180877 -104449243 + MTE-int LTR MaLR 279 511 -1069 2 975 3901 206 57 42 chr4 51180885 51181768 -104448352 + Lx4A LINE L1 6163 7058 0 2 975 4817 65 14 27 chr4 51181900 51182563 -104447557 + L1Md_F2 LINE L1 5929 6582 0 2 975 988 78 0 0 chr4 51183072 51183201 -104446919 - B1_Mus1 SINE Alu -10 138 10 2 975 26 0 0 0 chr4 51183213 51183239 -104446881 + AT_rich Low_complexity Low_complexity 1 26 0 2 975 316 250 83 137 chr4 51183331 51183535 -104446585 - B3A SINE B2 -1 197 5 2 975 400 321 7 55 chr4 51184129 51184274 -104445846 + RSINE1 SINE B4 3 140 -25 2 975 331 221 28 128 chr4 51184436 51184545 -104445575 + ORR1D1 LTR MaLR 93 190 -184 2 975 419 101 0 12 chr4 51184569 51184649 -104445471 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 2 975 630 266 31 6 chr4 51184673 51184832 -104445288 + ORR1D1 LTR MaLR 204 366 -8 2 975 19491 61 2 3 chr4 51184832 51187376 -104442744 - L1Md_F2 LINE L1 -685 5198 2658 2 975 5474 41 2 0 chr4 51187373 51188112 -104442008 + L1Md_F2 LINE L1 5215 5955 -627 2 975 3612 69 4 2 chr4 51188109 51188576 -104441544 + L1Md_F2 LINE L1 6090 6557 -25 2 975 414 0 0 0 chr4 51188579 51188625 -104441495 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 975 603 77 0 42 chr4 51188636 51188731 -104441389 - L1_Mm LINE L1 -471 5412 5322 2 975 5520 87 24 19 chr4 51188731 51189535 -104440585 + L1_Mus2 LINE L1 5759 6566 0 2 975 816 100 0 0 chr4 51189543 51189663 -104440457 + (GAGAA)n Simple_repeat Simple_repeat 4 123 0 2 975 23 78 0 0 chr4 51189859 51189910 -104440210 + AT_rich Low_complexity Low_complexity 1 51 0 2 975 23 0 0 0 chr4 51190591 51190614 -104439506 + AT_rich Low_complexity Low_complexity 1 23 0 2 975 2926 47 3 5 chr4 51190766 51191147 -104438973 + L1Md_F2 LINE L1 6203 6582 0 2 975 24 0 0 0 chr4 51191244 51191268 -104438852 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 518 375 47 0 chr4 51191861 51192117 -104438003 - Lx8 LINE L1 -138 7335 7068 2 975 731 294 34 28 chr4 51192216 51192569 -104437551 - L1_Mur3 LINE L1 -1628 4252 3898 2 975 471 63 0 0 chr4 51192570 51192633 -104437487 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 975 499 324 93 0 chr4 51192649 51192853 -104437267 + Lx8 LINE L1 6610 6832 -641 2 975 683 350 70 30 chr4 51192880 51193278 -104436842 + Lx8 LINE L1 6906 7319 -154 2 975 1645 154 14 21 chr4 51193294 51193675 -104436445 + RMER17A2 LTR ERVK 1 327 -315 2 975 21 57 0 0 chr4 51193678 51193713 -104436407 + AT_rich Low_complexity Low_complexity 1 35 0 2 975 230 290 10 51 chr4 51193714 51193812 -104436308 + Lx8 LINE L1 7368 7461 -12 2 975 4178 196 27 13 chr4 51193827 51194483 -104435637 - Lx2B LINE L1 -2 6998 6349 2 975 342 0 0 0 chr4 51194483 51194521 -104435599 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 975 4178 196 27 13 chr4 51194521 51194726 -104435394 - Lx2B LINE L1 -652 6348 6127 2 975 6073 157 30 7 chr4 51194806 51196498 -104433622 + Lx LINE L1 4924 6651 -3 2 975 197 65 32 0 chr4 51196771 51196802 -104433318 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 975 198 0 0 0 chr4 51197312 51197334 -104432786 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 975 354 100 0 0 chr4 51197901 51197961 -104432159 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 975 424 302 128 10 chr4 51198292 51198748 -104431372 + L1M2 LINE L1 5141 5649 -651 2 975 441 333 107 9 chr4 51198758 51198973 -104431147 - B4A SINE B4 -30 262 27 2 975 379 165 8 76 chr4 51199751 51199869 -104430251 + L1_Mus3 LINE L1 6528 6637 -1 2 975 4862 149 15 7 chr4 51199981 51201305 -104428815 + L1VL4 LINE L1 689 2024 -1890 2 975 6143 78 0 11 chr4 51201299 51202138 -104427982 - L1Md_F2 LINE L1 -756 5127 4298 2 975 5365 81 0 2 chr4 51202133 51202979 -104427141 + L1Md_F2 LINE L1 5162 6005 -577 2 975 225 0 0 0 chr4 51203370 51203395 -104426725 + (A)n Simple_repeat Simple_repeat 1 25 0 2 975 3989 95 0 11 chr4 51203395 51203968 -104426152 + L1Md_F2 LINE L1 6012 6578 -4 2 975 9050 129 18 46 chr4 51204001 51205807 -104424313 + L1VL4 LINE L1 2024 3777 -2109 2 975 5797 108 17 5 chr4 51205799 51207167 -104422953 + L1Md_F2 LINE L1 4834 6222 -360 2 975 1435 67 0 5 chr4 51207167 51207363 -104422757 + L1Md_F2 LINE L1 6376 6570 -12 2 975 3967 164 4 7 chr4 51207375 51208058 -104422062 + L1_Mus4 LINE L1 5956 6636 0 2 975 5108 192 50 11 chr4 51208135 51209203 -104420917 - Lx2B LINE L1 0 7000 5892 2 975 249 179 52 35 chr4 51209474 51209648 -104420472 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 2 975 21 36 0 0 chr4 51209658 51209686 -104420434 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 207 93 45 23 chr4 51210155 51210199 -104419921 + T-rich Low_complexity Low_complexity 4 48 0 2 975 21 36 0 0 chr4 51210256 51210284 -104419836 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 954 167 23 0 chr4 51211062 51211236 -104418884 + URR1A DNA MER1_type 49 226 0 2 975 272 260 31 39 chr4 51211325 51211453 -104418667 + CT-rich Low_complexity Low_complexity 4 130 0 2 975 498 334 66 73 chr4 51212456 51212837 -104417283 + MTEa LTR MaLR 2 379 0 2 975 25897 173 8 72 chr4 51213268 51214494 -104415626 + L1_Mus3 LINE L1 693 1838 -4045 2 975 1132 62 7 0 chr4 51214494 51214640 -104415480 + B1_Mus2 SINE Alu 1 147 0 2 975 25897 137 12 18 chr4 51214640 51219482 -104410638 + L1_Mus3 LINE L1 1839 6633 -5 2 975 185 277 60 30 chr4 51220398 51220465 -104409655 - MIRm SINE MIR -58 218 150 2 975 356 129 40 0 chr4 51221298 51221399 -104408721 + (TTTG)n Simple_repeat Simple_repeat 2 106 0 2 975 40 21 0 0 chr4 51222103 51222150 -104407970 + AT_rich Low_complexity Low_complexity 1 47 0 2 975 21 57 0 0 chr4 51225290 51225325 -104404795 + AT_rich Low_complexity Low_complexity 1 35 0 2 975 787 37 37 0 chr4 51226254 51226363 -104403757 + (TTCTC)n Simple_repeat Simple_repeat 4 116 0 2 975 618 280 140 26 chr4 51226390 51226661 -104403459 - ORR1E LTR MaLR -32 327 26 2 975 748 280 43 0 chr4 51226675 51226886 -104403234 - ORR1E-int LTR MaLR -2 1368 1149 2 975 348 311 38 124 chr4 51226985 51227194 -104402926 - ORR1E LTR MaLR -168 191 1 2 975 346 246 78 22 chr4 51227435 51227650 -104402470 + L1MA4A LINE L1 5654 5845 -2 2 975 406 361 39 29 chr4 51227712 51227923 -104402197 - B3A SINE B2 -1 215 1 2 975 612 254 0 0 chr4 51228107 51228233 -104401887 + B1_Mur3 SINE Alu 2 127 -22 2 975 321 89 0 0 chr4 51228245 51228290 -104401830 + (CAGAG)n Simple_repeat Simple_repeat 3 47 0 2 975 908 128 0 6 chr4 51228290 51228446 -104401674 + (GAAAA)n Simple_repeat Simple_repeat 4 159 0 2 975 1060 303 68 30 chr4 51228479 51229317 -104400803 + Lx5 LINE L1 6268 7050 0 2 975 26 0 0 0 chr4 51230186 51230212 -104399908 + AT_rich Low_complexity Low_complexity 1 26 0 2 975 233 217 84 109 chr4 51230267 51230386 -104399734 - Tigger10 DNA Tigger -1531 312 197 2 975 364 224 13 0 chr4 51230519 51230595 -104399525 - B1_Mus2 SINE Alu -39 108 32 2 975 336 48 0 0 chr4 51230773 51230815 -104399305 + (T)n Simple_repeat Simple_repeat 1 42 0 2 975 471 251 136 5 chr4 51230994 51231178 -104398942 + L1_Rod LINE L1 5609 5816 -31 3 975 357 161 0 0 chr4 51231221 51231308 -104398812 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 975 3718 102 5 19 chr4 51231375 51231940 -104398180 + L1_Mus2 LINE L1 5875 6423 -143 3 975 667 113 78 0 chr4 51231951 51232093 -104398027 - RMER17B LTR ERVK -498 460 308 3 975 1137 77 0 0 chr4 51232093 51232248 -104397872 + L1_Mus2 LINE L1 6412 6566 0 3 975 268 307 87 20 chr4 51232303 51232499 -104397621 - L1M4 LINE L1 -3316 2830 2622 3 975 720 286 123 55 chr4 51232594 51232886 -104397234 - MTE2a LTR MaLR -27 352 41 3 975 693 218 0 0 chr4 51232878 51233002 -104397118 - B1_Mus2 SINE Alu -15 132 9 3 975 245 346 0 12 chr4 51233008 51233090 -104397030 - MTE2a LTR MaLR -298 81 1 3 975 21 36 0 0 chr4 51233991 51234019 -104396101 + AT_rich Low_complexity Low_complexity 1 28 0 3 975 420 391 70 18 chr4 51234019 51234248 -104395872 + B4A SINE B4 1 241 -51 3 975 258 280 20 20 chr4 51234259 51234361 -104395759 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 3 975 227 133 22 0 chr4 51234940 51234985 -104395135 + CT-rich Low_complexity Low_complexity 1 46 0 3 975 595 0 27 0 chr4 51234997 51235072 -104395048 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 3 975 387 0 0 0 chr4 51235350 51235393 -104394727 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 975 2817 76 0 13 chr4 51235395 51235781 -104394339 - L1Md_F2 LINE L1 -19 6563 6183 3 975 26 30 0 0 chr4 51235781 51235814 -104394306 + AT_rich Low_complexity Low_complexity 1 33 0 3 975 3531 234 45 26 chr4 51235819 51236363 -104393757 - Lx6 LINE L1 -14 7446 6879 3 975 868 121 6 6 chr4 51236363 51236537 -104393583 + (TC)n Simple_repeat Simple_repeat 2 175 0 3 975 441 0 0 0 chr4 51236537 51236585 -104393535 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 975 3531 234 45 26 chr4 51236585 51236877 -104393243 - Lx6 LINE L1 -582 6878 6594 3 975 25 0 0 0 chr4 51237044 51237069 -104393051 + AT_rich Low_complexity Low_complexity 1 25 0 3 975 216 0 0 0 chr4 51238939 51238963 -104391157 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 975 482 0 17 0 chr4 51238963 51239021 -104391099 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 975 7720 56 16 1 chr4 51239270 51240854 -104389266 - L1Md_F2 LINE L1 -2 6580 4973 3 975 297 256 13 13 chr4 51242542 51242621 -104387499 + GA-rich Low_complexity Low_complexity 1 79 0 3 975 522 27 12 102 chr4 51242626 51242792 -104387328 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 3 975 21 0 0 0 chr4 51243864 51243885 -104386235 + AT_rich Low_complexity Low_complexity 1 21 0 3 975 559 317 95 8 chr4 51245063 51245374 -104384746 - ORR1E LTR MaLR -13 366 1 3 975 5741 57 1 0 chr4 51245446 51246170 -104383950 - L1Md_F2 LINE L1 -12 6570 5846 3 975 455 317 82 45 chr4 51246420 51246745 -104383375 - L1MC2 LINE L1 -36 6308 5957 3 975 333 0 0 0 chr4 51246745 51246782 -104383338 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 975 455 317 82 45 chr4 51246782 51246942 -104383178 - L1MC2 LINE L1 -388 5956 5805 3 975 349 314 44 73 chr4 51247194 51247668 -104382452 - L1MC2 LINE L1 -842 5491 5022 3 975 289 240 97 59 chr4 51247691 51247877 -104382243 - L1MA8 LINE L1 -8 6283 6091 3 975 330 45 0 0 chr4 51248004 51248048 -104382072 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 3 975 338 336 21 76 chr4 51248088 51248233 -104381887 + B3A SINE B2 48 184 -14 3 975 270 263 52 10 chr4 51248852 51248948 -104381172 + Lx6 LINE L1 7319 7418 -42 3 976 1020 106 7 0 chr4 51249488 51249630 -104380490 - B1_Mm SINE Alu 0 147 5 3 976 26 30 0 0 chr4 51249874 51249907 -104380213 + AT_rich Low_complexity Low_complexity 1 33 0 3 976 21 36 0 0 chr4 51250001 51250029 -104380091 + AT_rich Low_complexity Low_complexity 1 28 0 3 976 29 98 0 0 chr4 51250200 51250292 -104379828 + AT_rich Low_complexity Low_complexity 1 92 0 3 976 21 0 0 0 chr4 51250734 51250755 -104379365 + AT_rich Low_complexity Low_complexity 1 21 0 3 976 207 0 0 0 chr4 51251199 51251222 -104378898 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 976 766 320 120 27 chr4 51251350 51251832 -104378288 + Charlie1a DNA MER1_type 70 596 -859 3 976 264 312 80 40 chr4 51252192 51252342 -104377778 - MLT2B3 LTR ERVL -384 170 15 3 976 263 327 62 73 chr4 51252354 51252532 -104377588 + Charlie1a DNA MER1_type 614 789 -666 3 976 1015 81 28 17 chr4 51252543 51252720 -104377400 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 976 539 105 77 41 chr4 51252722 51252891 -104377229 + GA-rich Low_complexity Low_complexity 3 177 0 3 976 314 269 0 15 chr4 51252891 51252959 -104377161 + polypurine Low_complexity Low_complexity 3 69 0 3 976 340 336 91 0 chr4 51252960 51253103 -104377017 + HAL1-3A_ME LINE L1 2284 2439 -419 3 976 334 247 8 35 chr4 51253105 51253364 -104376756 + A-rich Low_complexity Low_complexity 1 251 0 3 976 602 117 39 55 chr4 51253364 51253545 -104376575 + GA-rich Low_complexity Low_complexity 3 180 0 3 976 314 312 40 47 chr4 51253577 51253725 -104376395 + HAL1-3A_ME LINE L1 2292 2438 -420 3 976 285 98 0 0 chr4 51253725 51253766 -104376354 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 3 976 1116 120 22 5 chr4 51254275 51254459 -104375661 + B2_Mm2 SINE B2 2 188 -7 3 976 896 244 166 44 chr4 51254542 51255060 -104375060 + Charlie1a DNA MER1_type 773 1353 -102 3 976 510 281 0 7 chr4 51255283 51255423 -104374697 - L1MC LINE L1 -899 5445 5307 3 976 325 0 44 0 chr4 51256661 51256706 -104373414 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 3 976 737 99 32 16 chr4 51257041 51257164 -104372956 - L1_Mur2 LINE L1 -1140 4737 4613 3 976 6722 114 29 8 chr4 51257173 51258288 -104371832 + L1_Mus4 LINE L1 5492 6629 -7 3 976 240 35 0 0 chr4 51258604 51258633 -104371487 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 976 992 88 22 0 chr4 51258633 51258770 -104371350 - B1_Mus1 SINE Alu -6 142 3 3 976 2447 170 75 32 chr4 51258784 51259314 -104370806 + MTB_Mm-int LTR MaLR 546 1098 0 3 976 2706 129 0 10 chr4 51259317 51259725 -104370395 + MTB_Mm LTR MaLR 4 407 0 3 976 510 122 0 0 chr4 51259856 51259954 -104370166 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 976 414 0 0 0 chr4 51263640 51263686 -104366434 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 976 369 0 0 0 chr4 51263802 51263843 -104366277 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 976 22 35 0 0 chr4 51264114 51264143 -104365977 + AT_rich Low_complexity Low_complexity 1 29 0 3 976 1561 192 74 30 chr4 51264934 51265327 -104364793 - L1_Mur3 LINE L1 -3831 2049 1640 3 976 207 0 0 0 chr4 51267018 51267041 -104363079 + (T)n Simple_repeat Simple_repeat 1 23 0 3 976 25 31 0 0 chr4 51267043 51267075 -104363045 + AT_rich Low_complexity Low_complexity 1 32 0 3 976 1834 206 116 58 chr4 51267277 51267964 -104362156 + L1_Mur3 LINE L1 2441 3167 -2713 3 976 654 49 0 0 chr4 51268063 51268145 -104361975 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 976 534 222 77 0 chr4 51268483 51268600 -104361520 + B1_Mus1 SINE Alu 7 132 -16 3 976 3586 205 25 28 chr4 51268615 51269482 -104360638 + L1_Mur3 LINE L1 4434 5298 -582 3 976 19934 173 23 25 chr4 51269483 51273659 -104356461 + L1VL4 LINE L1 561 4731 -1152 3 976 911 106 7 0 chr4 51273659 51273801 -104356319 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 3 976 19934 185 21 29 chr4 51273801 51274527 -104355593 + L1VL4 LINE L1 4732 5448 -435 3 976 4417 34 21 0 chr4 51274527 51275062 -104355058 + L1Md_T LINE L1 6037 6582 0 3 976 19934 185 21 29 chr4 51275062 51275093 -104355027 + L1VL4 LINE L1 5449 5479 -404 3 976 3361 59 2 7 chr4 51275093 51275536 -104354584 + L1Md_F2 LINE L1 6142 6582 0 3 976 19934 185 21 29 chr4 51275536 51275551 -104354569 + L1VL4 LINE L1 5480 5493 -390 3 976 288 70 0 0 chr4 51275578 51275621 -104354499 + (A)n Simple_repeat Simple_repeat 1 43 0 3 976 24 0 0 0 chr4 51275665 51275689 -104354431 + AT_rich Low_complexity Low_complexity 1 24 0 3 976 423 0 0 0 chr4 51275911 51275958 -104354162 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 976 348 77 0 0 chr4 51276062 51276114 -104354006 + (CAA)n Simple_repeat Simple_repeat 2 53 0 3 976 1680 120 148 3 chr4 51276177 51276495 -104353625 + RLTR47_MM LTR ERV1 3 366 -166 3 976 231 36 0 0 chr4 51276499 51276527 -104353593 + (A)n Simple_repeat Simple_repeat 1 28 0 3 976 3134 103 9 2 chr4 51276527 51276994 -104353126 - L1_Mus4 LINE L1 -12 6624 6155 3 976 1226 149 40 5 chr4 51276994 51277217 -104352903 - L1_Mm LINE L1 -441 5442 5212 3 976 713 112 152 14 chr4 51277220 51277365 -104352755 + RLTR47_MM LTR ERV1 354 518 -14 3 976 1974 171 56 40 chr4 51277447 51278038 -104352082 + L1_Mur2 LINE L1 1047 1720 -4157 3 976 4913 123 12 0 chr4 51278028 51278793 -104351327 - L1_Mm LINE L1 -1391 4492 3719 3 976 2399 107 122 20 chr4 51278793 51279186 -104350934 + L1_Mus2 LINE L1 6123 6555 -11 3 976 6223 213 52 12 chr4 51279203 51279545 -104350575 + L1_Mur2 LINE L1 1704 2038 -3839 3 976 426 20 0 0 chr4 51279545 51279596 -104350524 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 976 6223 213 52 12 chr4 51279596 51280885 -104349235 + L1_Mur2 LINE L1 2039 3400 -2477 3 976 25 0 0 0 chr4 51281227 51281252 -104348868 + AT_rich Low_complexity Low_complexity 1 25 0 3 976 492 48 0 0 chr4 51281315 51281378 -104348742 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 976 652 158 0 0 chr4 51281378 51281479 -104348641 - B2_Mm2 SINE B2 -46 149 49 3 976 380 20 20 0 chr4 51281491 51281540 -104348580 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 976 25 0 0 0 chr4 51281670 51281695 -104348425 + AT_rich Low_complexity Low_complexity 1 25 0 3 976 227 280 58 29 chr4 51284508 51284611 -104345509 + L1M3a LINE L1 124 229 -5838 3 976 228 276 201 12 chr4 51284860 51285179 -104344941 + L1M3a LINE L1 3269 3647 -2493 3 976 960 143 84 1 chr4 51285289 51285482 -104344638 - Lx4B LINE L1 -1083 5975 5765 3 976 365 224 57 64 chr4 51285529 51285686 -104344434 - Lx2A1 LINE L1 0 7008 6853 3 976 1688 186 5 0 chr4 51285655 51286003 -104344117 - Lx4B LINE L1 -828 5055 4697 3 976 1488 171 3 16 chr4 51286009 51286318 -104343802 - Lx4B LINE L1 -1744 4133 3829 3 976 404 308 135 29 chr4 51286317 51286725 -104343395 + L1M3a LINE L1 4675 5125 -1015 3 976 7175 95 17 1 chr4 51286732 51288321 -104341799 + L1_Mus1 LINE L1 4952 6567 0 3 976 317 269 149 49 chr4 51288536 51288926 -104341194 + L1M3a LINE L1 5298 5726 -565 3 976 486 49 0 0 chr4 51289025 51289086 -104341034 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 976 464 200 25 0 chr4 51289090 51289210 -104340910 + (CAGA)n Simple_repeat Simple_repeat 3 125 0 3 976 767 152 6 0 chr4 51289210 51289388 -104340732 + GA-rich Low_complexity Low_complexity 2 180 0 3 976 32 0 0 0 chr4 51289434 51289466 -104340654 + AT_rich Low_complexity Low_complexity 1 32 0 3 976 949 83 21 0 chr4 51289475 51289619 -104340501 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 3 976 3182 162 80 16 chr4 51289641 51290254 -104339866 - Lx3C LINE L1 -7 6969 6318 3 976 3258 158 27 13 chr4 51290242 51290837 -104339283 + Lx3C LINE L1 5705 6307 -669 3 976 228 228 112 61 chr4 51291094 51291192 -104338928 - LTR48 LTR ERV1 -378 409 307 3 976 421 339 55 28 chr4 51291434 51291689 -104338431 - Lx8 LINE L1 -193 7280 7019 3 976 603 39 0 0 chr4 51292108 51292186 -104337934 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 976 332 351 94 41 chr4 51292201 51292614 -104337506 + L1MC4a LINE L1 6202 6636 -1246 4 976 24 32 0 0 chr4 51292841 51292872 -104337248 + AT_rich Low_complexity Low_complexity 1 31 0 4 976 21 0 0 0 chr4 51292894 51292915 -104337205 + AT_rich Low_complexity Low_complexity 1 21 0 4 976 773 56 9 0 chr4 51293024 51293131 -104336989 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 4 976 305 143 29 0 chr4 51293144 51293214 -104336906 + (TCTG)n Simple_repeat Simple_repeat 2 73 0 4 976 282 298 62 21 chr4 51293220 51293316 -104336804 - PB1D10 SINE Alu -11 106 7 4 976 792 318 60 7 chr4 51293439 51293721 -104336399 + MTD LTR MaLR 1 297 -122 4 976 2944 233 59 22 chr4 51293726 51294403 -104335717 + Lx6 LINE L1 6757 7458 -2 4 976 263 150 0 16 chr4 51294829 51294890 -104335230 + (TAAA)n Simple_repeat Simple_repeat 4 63 0 4 976 1048 186 41 41 chr4 51295558 51295777 -104334343 + URR1B DNA MER1_type 7 225 0 4 976 1413 57 0 0 chr4 51295941 51296153 -104333967 + (TTTC)n Simple_repeat Simple_repeat 1 212 0 4 976 2815 151 113 17 chr4 51296191 51297166 -104332954 + L1_Mur2 LINE L1 565 1646 -4231 4 976 2134 291 72 21 chr4 51297169 51298463 -104331657 + Lx6 LINE L1 5639 7250 -210 4 976 231 290 43 0 chr4 51298464 51298533 -104331587 - Lx8 LINE L1 -1023 6450 6379 4 976 933 299 81 21 chr4 51298557 51299198 -104330922 + L1MC3 LINE L1 5627 6318 -1467 4 976 22 35 0 0 chr4 51299282 51299311 -104330809 + AT_rich Low_complexity Low_complexity 1 29 0 4 976 22 0 0 0 chr4 51301154 51301176 -104328944 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 523 226 57 13 chr4 51302533 51302663 -104327457 + Lx9 LINE L1 7353 7491 -153 4 976 204 40 0 0 chr4 51302663 51302688 -104327432 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 976 523 226 57 13 chr4 51302688 51302714 -104327406 + Lx9 LINE L1 7492 7516 -128 4 976 594 105 0 0 chr4 51302727 51302832 -104327288 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 976 546 315 56 56 chr4 51303023 51303238 -104326882 + B3A SINE B2 1 215 -1 4 976 22 35 0 0 chr4 51303263 51303292 -104326828 + AT_rich Low_complexity Low_complexity 1 29 0 4 976 247 379 129 0 chr4 51303304 51303428 -104326692 + B1F SINE Alu 3 142 -7 4 976 253 312 83 59 chr4 51303518 51304043 -104326077 - L1MB2 LINE L1 -36 6135 5597 4 976 1953 229 173 19 chr4 51304047 51304580 -104325540 - Lx3C LINE L1 -5 6971 6357 4 976 12494 173 120 104 chr4 51304579 51307312 -104322808 - L1_Mus2 LINE L1 0 6566 3572 4 976 2112 158 31 13 chr4 51307312 51307703 -104322417 + RLTR9D LTR ERVK 1 398 -5 4 976 12494 173 120 104 chr4 51307703 51310172 -104319948 - L1_Mus2 LINE L1 0 3571 864 4 976 38424 8 0 1 chr4 51311748 51317747 -104312373 + L1Md_A LINE L1 1 5586 -297 4 976 8996 4 0 0 chr4 51317747 51318742 -104311378 + L1Md_A LINE L1 5587 6581 -1 4 976 2039 153 3 6 chr4 51319421 51319749 -104310371 - ORR1A2 LTR MaLR 0 327 1 4 976 860 274 76 72 chr4 51319918 51320431 -104309689 + MT2B LTR ERVL 14 541 -60 4 976 663 216 0 0 chr4 51320687 51320803 -104309317 + B3 SINE B2 1 116 -100 4 976 382 84 3 0 chr4 51322096 51322152 -104307968 + L1Md_F2 LINE L1 5539 5616 -558 4 976 7727 63 0 8 chr4 51322152 51323208 -104306912 + L1Md_F2 LINE L1 5588 6582 0 4 976 250 320 13 0 chr4 51323256 51323331 -104306789 - MLT2B3 LTR ERVL -454 100 25 4 976 406 340 10 29 chr4 51323498 51323707 -104306413 + B3 SINE B2 2 206 -10 4 976 6068 205 17 18 chr4 51323960 51325232 -104304888 - Lx4B LINE L1 -5 7053 5783 4 976 2156 241 68 10 chr4 51325266 51325962 -104304158 - Lx4B LINE L1 -20 6980 6236 4 976 2494 208 85 2 chr4 51325958 51326626 -104303494 + Lx4B LINE L1 5511 6241 -817 4 976 8668 195 38 18 chr4 51326627 51327806 -104302314 - L1_Mur2 LINE L1 -83 5794 4599 4 976 3674 101 2 2 chr4 51327806 51328314 -104301806 - L1_Mus1 LINE L1 -2 6565 6058 4 976 8668 195 38 18 chr4 51328314 51329027 -104301093 - L1_Mur2 LINE L1 -1279 4598 3865 4 976 3422 179 92 18 chr4 51329025 51329815 -104300305 + L1_Mur2 LINE L1 2293 3141 -2736 4 976 7713 100 2 4 chr4 51329797 51331611 -104298509 + L1_Mus1 LINE L1 4758 6567 0 4 976 3741 166 16 42 chr4 51331616 51332412 -104297708 + L1_Mur2 LINE L1 3130 3905 -1972 4 976 4202 72 1 67 chr4 51332407 51333064 -104297056 + L1Md_A LINE L1 638 1251 -5473 4 976 2507 63 29 0 chr4 51333066 51333382 -104296738 + IAPLTR2b LTR ERVK 1 325 -2 4 976 10802 88 37 74 chr4 51333384 51335116 -104295004 + IAPEz-int LTR ERVK 1 1700 -4781 4 976 6137 64 12 18 chr4 51335111 51335934 -104294186 + IAPEz-int LTR ERVK 5653 6470 -11 4 976 14826 50 1 2 chr4 51335934 51335945 -104294175 + L1_Mm LINE L1 1237 1246 -4637 4 976 2488 57 32 0 chr4 51335945 51336260 -104293860 + IAPLTR2b LTR ERVK 1 325 -2 4 976 14826 50 1 2 chr4 51336260 51338175 -104291945 + L1_Mm LINE L1 1247 3162 -2721 4 976 30174 37 1 156 chr4 51338251 51341683 -104288437 + L1Md_F2 LINE L1 641 3952 -1931 4 976 7982 44 0 1 chr4 51341683 51342658 -104287462 + L1Md_A LINE L1 5609 6582 0 4 976 30174 33 1 176 chr4 51342658 51345146 -104284974 + L1Md_F2 LINE L1 3953 5585 -298 4 976 7216 66 4 53 chr4 51345147 51346191 -104283929 + L1Md_F2 LINE L1 5587 6579 -3 4 976 1158 178 82 19 chr4 51346206 51346475 -104283645 + L1_Mur2 LINE L1 3893 4178 -1699 4 976 29 0 0 0 chr4 51346480 51346509 -104283611 + AT_rich Low_complexity Low_complexity 1 29 0 4 976 6347 86 16 7 chr4 51347465 51348364 -104281756 - Lx3_Mus LINE L1 -3 7006 6100 4 976 1580 203 10 0 chr4 51348364 51348670 -104281450 - Lx5 LINE L1 -521 6529 6221 4 976 22 0 0 0 chr4 51348744 51348766 -104281354 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 207 0 0 0 chr4 51349040 51349063 -104281057 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 976 387 0 0 0 chr4 51349063 51349105 -104281015 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 976 475 307 21 21 chr4 51349479 51349619 -104280501 + B1F2 SINE Alu 5 144 -5 4 976 6193 130 35 8 chr4 51351201 51352168 -104277952 + Lx LINE L1 5661 6653 -1 4 976 39 22 0 0 chr4 51352438 51352484 -104277636 + AT_rich Low_complexity Low_complexity 1 46 0 4 976 281 211 0 0 chr4 51352824 51352876 -104277244 - MT2A LTR ERVL -388 145 94 4 976 455 266 48 48 chr4 51352861 51353007 -104277113 - MT2A LTR ERVL -387 146 1 4 976 766 282 66 25 chr4 51353007 51353327 -104276793 + Lx7 LINE L1 6993 7325 -371 4 976 203 61 30 0 chr4 51353430 51353463 -104276657 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 976 3458 96 0 14 chr4 51353869 51354353 -104275767 - L1_Mus1 LINE L1 0 6567 6091 4 976 1297 192 103 0 chr4 51354544 51354825 -104275295 - Lx2A1 LINE L1 -3 6973 6664 4 976 3478 163 41 5 chr4 51354828 51355682 -104274438 - Lx2A1 LINE L1 -994 6014 5128 4 976 4090 215 76 11 chr4 51355678 51355820 -104274300 + Lx2A1 LINE L1 6036 6179 -829 4 976 4433 110 17 1 chr4 51355820 51356477 -104273643 + L1_Mus3 LINE L1 5971 6637 -1 4 976 4090 215 76 11 chr4 51356477 51357234 -104272886 + Lx2A1 LINE L1 6180 6992 -16 4 976 195 42 0 0 chr4 51357234 51357258 -104272862 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 976 5274 135 18 7 chr4 51357270 51358125 -104271995 - Lx3C LINE L1 -326 6650 5787 4 976 1534 100 0 5 chr4 51358123 51358334 -104271786 + L1_Mus4 LINE L1 6334 6543 -93 4 976 241 385 17 0 chr4 51358371 51358488 -104271632 + LTR53 LTR ERVL 401 519 0 4 976 21 0 0 0 chr4 51358491 51358512 -104271608 + AT_rich Low_complexity Low_complexity 1 21 0 4 976 37941 43 4 7 chr4 51358512 51364243 -104265877 - L1Md_T LINE L1 -452 6130 421 4 976 1127 117 67 0 chr4 51364435 51364614 -104265506 - B2_Mm2 SINE B2 -3 192 2 4 976 317 387 0 28 chr4 51365745 51365854 -104264266 + PB1D10 SINE Alu 6 111 -6 4 976 23 0 0 0 chr4 51367435 51367458 -104262662 + AT_rich Low_complexity Low_complexity 1 23 0 4 976 219 36 0 0 chr4 51368416 51368444 -104261676 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 976 545 356 84 12 chr4 51368616 51368866 -104261254 + ORR1D2 LTR MaLR 39 306 -64 4 976 3093 185 33 13 chr4 51369092 51369706 -104260414 + Lx3C LINE L1 5590 6215 -761 4 976 662 298 28 17 chr4 51369719 51369900 -104260220 + B3 SINE B2 6 188 -28 4 976 27 62 0 0 chr4 51370001 51370049 -104260071 + AT_rich Low_complexity Low_complexity 1 48 0 4 976 277 315 42 32 chr4 51370838 51370933 -104259187 + RSINE1 SINE B4 56 151 -14 4 976 513 92 0 0 chr4 51370946 51371022 -104259098 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 976 191 103 26 0 chr4 51371022 51371061 -104259059 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 976 491 241 68 0 chr4 51371616 51371778 -104258342 + RMER10A LTR ERVL 225 397 -45 4 976 1032 90 14 0 chr4 51372054 51372190 -104257930 + B1_Mm SINE Alu 1 138 -9 4 976 315 0 0 0 chr4 51372190 51372225 -104257895 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 976 775 274 21 11 chr4 51372423 51372611 -104257509 - B3 SINE B2 0 216 27 4 976 1111 88 0 0 chr4 51372647 51372794 -104257326 - B1_Mus1 SINE Alu 0 148 2 4 976 489 325 56 67 chr4 51373422 51373689 -104256431 - B4A SINE B4 0 292 29 4 976 659 318 81 26 chr4 51374064 51374409 -104255711 - MER82 DNA MER2_type -175 478 115 4 976 487 152 48 0 chr4 51375056 51375161 -104254959 + Lx LINE L1 6544 6653 -1 4 976 408 314 89 0 chr4 51375164 51375288 -104254832 + RSINE1 SINE B4 2 136 -29 4 976 249 295 0 64 chr4 51375366 51375460 -104254660 + MER5A1 DNA MER1_type 61 148 -18 4 976 2490 222 46 8 chr4 51376897 51377418 -104252702 - Lx5 LINE L1 -401 6649 6109 4 976 1490 241 46 12 chr4 51377419 51377764 -104252356 + Lx5 LINE L1 6691 7047 -3 4 976 21 0 0 0 chr4 51377859 51377880 -104252240 + AT_rich Low_complexity Low_complexity 1 21 0 4 976 311 150 17 0 chr4 51379421 51379481 -104250639 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 4 976 520 364 26 0 chr4 51379486 51379637 -104250483 - RSINE1 SINE B4 -2 163 9 4 976 364 353 49 0 chr4 51379736 51379920 -104250200 + MER54B LTR ERVL 1 193 -600 4 976 633 329 120 11 chr4 51379910 51380193 -104249927 + MER54B LTR ERVL 478 791 -2 4 977 24 77 0 0 chr4 51380712 51380764 -104249356 + AT_rich Low_complexity Low_complexity 1 52 0 4 977 511 302 26 52 chr4 51381011 51381203 -104248917 + B3A SINE B2 6 192 -6 4 977 251 47 0 65 chr4 51381805 51381851 -104248269 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 977 2970 29 0 0 chr4 51381909 51382255 -104247865 + ORR1A0 LTR MaLR 1 346 0 4 977 349 222 98 56 chr4 51382322 51382465 -104247655 + L1MC LINE L1 3035 3183 -2963 4 977 1259 243 60 68 chr4 51383187 51383702 -104246418 - RLTR18 LTR ERVK 0 512 6 4 977 320 208 69 10 chr4 51383739 51383841 -104246279 - Lx2 LINE L1 0 6997 6890 5 977 591 139 0 0 chr4 51383930 51384031 -104246089 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 977 236 36 0 0 chr4 51384031 51384059 -104246061 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 977 199 140 20 20 chr4 51384259 51384310 -104245810 + (TATG)n Simple_repeat Simple_repeat 3 53 0 5 977 570 288 15 39 chr4 51384322 51384360 -104245760 - B3 SINE B2 -15 201 167 5 977 1047 117 0 0 chr4 51384360 51384540 -104245580 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 977 570 288 15 39 chr4 51384540 51384707 -104245413 - B3 SINE B2 -50 166 1 5 977 628 267 7 0 chr4 51384710 51384845 -104245275 - B1_Mur1 SINE Alu -7 142 7 5 977 904 108 0 0 chr4 51385074 51385203 -104244917 + B1_Mus1 SINE Alu 13 141 -7 5 977 207 0 0 0 chr4 51385210 51385233 -104244887 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 977 327 89 36 0 chr4 51385920 51385976 -104244144 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 977 672 172 0 0 chr4 51385976 51386121 -104243999 + (TG)n Simple_repeat Simple_repeat 2 146 0 5 977 417 297 19 25 chr4 51386174 51386336 -104243784 - MER67C LTR ERV1 -61 650 490 5 977 287 331 81 40 chr4 51386343 51386689 -104243431 + Lx8 LINE L1 7109 7468 -5 5 977 934 339 66 30 chr4 51386692 51387163 -104242957 - MER67C LTR ERV1 -220 491 4 5 977 415 173 36 0 chr4 51387670 51387809 -104242311 + (TCTA)n Simple_repeat Simple_repeat 4 147 0 5 977 294 246 16 0 chr4 51389268 51389368 -104240752 + L1MA8 LINE L1 6057 6160 -131 5 977 289 318 26 45 chr4 51389771 51389926 -104240194 + LTR48B LTR ERV1 381 532 -112 5 977 633 268 117 52 chr4 51389963 51390211 -104239909 - RMER5 LTR ERV1 -42 492 229 5 977 25 83 0 0 chr4 51390706 51390766 -104239354 + AT_rich Low_complexity Low_complexity 1 60 0 5 977 336 274 65 6 chr4 51391208 51391377 -104238743 - L1MC3 LINE L1 -11 7774 7596 5 977 1262 236 68 11 chr4 51391377 51391723 -104238397 - MER67C LTR ERV1 -189 522 129 5 977 386 296 67 30 chr4 51391783 51391947 -104238173 - MER67C LTR ERV1 -526 185 16 5 977 26 0 0 0 chr4 51392346 51392372 -104237748 + AT_rich Low_complexity Low_complexity 1 26 0 5 977 224 182 0 22 chr4 51392387 51392432 -104237688 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 977 23 78 0 0 chr4 51392447 51392498 -104237622 + AT_rich Low_complexity Low_complexity 1 51 0 5 977 217 289 0 0 chr4 51392601 51392653 -104237467 + CT-rich Low_complexity Low_complexity 1 52 0 5 977 529 312 53 0 chr4 51392671 51392841 -104237279 - Lx8 LINE L1 -375 7098 6920 5 977 1272 97 0 68 chr4 51393015 51393237 -104236883 - L1Md_F2 LINE L1 -12 6570 6364 5 977 246 128 0 0 chr4 51393269 51393308 -104236812 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 977 250 359 39 0 chr4 51393337 51393440 -104236680 - Lx7 LINE L1 -997 6699 6593 5 977 512 254 89 36 chr4 51393594 51393753 -104236367 + MTD LTR MaLR 1 162 -245 5 977 28 79 0 0 chr4 51394032 51394095 -104236025 + AT_rich Low_complexity Low_complexity 1 63 0 5 977 347 350 52 77 chr4 51394498 51394653 -104235467 - B3 SINE B2 -42 156 2 5 977 416 270 134 70 chr4 51395452 51395854 -104234266 - L1MEc LINE L1 -5295 1105 678 5 977 226 131 15 62 chr4 51395865 51395930 -104234190 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 5 977 572 198 0 9 chr4 51395930 51396042 -104234078 + Lx LINE L1 6223 6333 -321 5 977 612 178 19 0 chr4 51396051 51396158 -104233962 - B2_Mm2 SINE B2 -86 109 1 5 977 4230 160 9 33 chr4 51396172 51396936 -104233184 - Lx LINE L1 -2 6652 5907 5 977 367 312 120 86 chr4 51396939 51396996 -104233124 + L1MEc LINE L1 444 498 -5902 5 977 1081 169 47 9 chr4 51396996 51397211 -104232909 - URR1B DNA MER1_type -1 224 2 5 977 367 312 120 86 chr4 51397211 51397479 -104232641 + L1MEc LINE L1 499 780 -5620 5 977 1464 106 17 7 chr4 51397639 51397867 -104232253 + Lx2 LINE L1 5704 5912 -1085 5 977 396 301 38 70 chr4 51397922 51398108 -104232012 - B3A SINE B2 -18 180 1 5 977 6494 106 4 0 chr4 51398117 51399045 -104231075 - L1_Mm LINE L1 -234 5649 4718 5 977 4117 93 2 2 chr4 51399046 51399615 -104230505 + L1_Mus2 LINE L1 5997 6565 -1 5 977 207 69 0 0 chr4 51399726 51399755 -104230365 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 977 26503 7 0 1 chr4 51399770 51402802 -104227318 + L1Md_A LINE L1 2558 5586 -297 5 977 8977 5 0 0 chr4 51402802 51403798 -104226322 + L1Md_A LINE L1 5587 6582 0 5 977 437 50 0 16 chr4 51403997 51404058 -104226062 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 977 1882 263 26 26 chr4 51404065 51404533 -104225587 - Lx5 LINE L1 -6 7044 6577 5 977 189 0 0 0 chr4 51404889 51404910 -104225210 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 977 3624 44 4 11 chr4 51404936 51405395 -104224725 - L1Md_F2 LINE L1 -2 6580 6125 5 977 3218 211 42 6 chr4 51405470 51406139 -104223981 + Lx3C LINE L1 6279 6971 -5 5 977 441 36 0 0 chr4 51406178 51406233 -104223887 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 5 977 23 33 0 0 chr4 51407038 51407068 -104223052 + AT_rich Low_complexity Low_complexity 1 30 0 5 977 1020 331 158 33 chr4 51407280 51408161 -104221959 - Lx8 LINE L1 -29 7444 6454 5 977 406 93 0 0 chr4 51408161 51408215 -104221905 + RLTR31_Mm LTR ERVK 1 54 -507 5 977 1147 172 57 0 chr4 51408229 51408456 -104221664 - RLTR11B LTR ERVK -213 240 1 5 977 445 122 0 108 chr4 51408908 51408991 -104221129 + RMER6C LTR ERVK 1 74 -616 5 977 192 321 18 0 chr4 51409355 51409411 -104220709 - L3 LINE CR1 0 4489 4433 5 977 1147 302 35 94 chr4 51410045 51410939 -104219181 - Lx8 LINE L1 -1009 6464 5588 5 977 810 288 47 50 chr4 51410942 51411264 -104218856 + Lx8 LINE L1 6482 6802 -671 5 977 405 0 0 0 chr4 51411270 51411315 -104218805 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 977 360 103 0 0 chr4 51411315 51411372 -104218748 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 977 1346 141 16 25 chr4 51411372 51411710 -104218410 + RLTR13D3 LTR ERVK 2 443 -671 5 977 7130 73 62 1 chr4 51411710 51412853 -104217267 + L1_Mus3 LINE L1 5418 6630 -8 5 977 292 299 94 31 chr4 51413009 51413168 -104216952 + Lx8 LINE L1 7184 7352 -121 5 977 257 335 96 11 chr4 51413661 51413848 -104216272 - L1MA5 LINE L1 -47 6253 6051 5 977 317 86 0 17 chr4 51414093 51414152 -104215968 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 5 977 277 218 147 52 chr4 51415789 51415905 -104214215 + Charlie12 DNA MER1_type 12 138 -2735 5 977 292 309 3 6 chr4 51416827 51416951 -104213169 - MLT1E1 LTR MaLR -417 263 141 5 977 4006 204 45 52 chr4 51416989 51417930 -104212190 - Lx5 LINE L1 -3 7047 6114 5 977 1049 286 112 32 chr4 51419238 51419911 -104210209 + Lx8 LINE L1 5298 6020 -1624 5 977 930 273 9 189 chr4 51420252 51420690 -104209430 - ORR1D1 LTR MaLR -2 372 14 5 977 500 313 13 0 chr4 51420862 51421012 -104209108 + Lx8 LINE L1 6347 6498 -975 5 977 762 317 31 20 chr4 51421039 51421332 -104208788 + Lx8 LINE L1 6596 6891 -582 5 977 285 348 64 52 chr4 51421774 51421947 -104208173 + B4 SINE B4 41 215 -77 5 977 4797 202 52 50 chr4 51422334 51422575 -104207545 - RLTR25A LTR ERVK 0 1103 885 5 977 219 69 0 0 chr4 51422575 51422604 -104207516 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 977 4797 202 52 50 chr4 51422604 51423463 -104206657 - RLTR25A LTR ERVK -219 884 1 5 977 213 39 0 0 chr4 51425107 51425133 -104204987 + (A)n Simple_repeat Simple_repeat 1 26 0 5 977 532 378 111 40 chr4 51425246 51425449 -104204671 + Lx8 LINE L1 6751 6944 -529 5 977 321 64 50 25 chr4 51425449 51425529 -104204591 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 977 532 378 111 40 chr4 51425529 51425545 -104204575 + Lx8 LINE L1 6945 6954 -519 5 977 3120 42 8 3 chr4 51425545 51425931 -104204189 - L1Md_F3 LINE L1 -2 6582 6195 5 977 532 378 111 40 chr4 51425931 51426385 -104203735 + Lx8 LINE L1 6955 7472 -1 5 977 2081 288 129 40 chr4 51426396 51427440 -104202680 + Lx6 LINE L1 6082 7434 -26 5 977 299 221 29 0 chr4 51427460 51427528 -104202592 - Lx6 LINE L1 -623 6837 6768 5 977 521 30 15 0 chr4 51427529 51427596 -104202524 + (TTTTA)n Simple_repeat Simple_repeat 1 68 0 5 977 1466 288 72 24 chr4 51427634 51428173 -104201947 + Lx6 LINE L1 6518 7460 0 5 977 318 383 7 14 chr4 51428552 51428695 -104201425 + RSINE1 SINE B4 4 145 -20 5 977 494 330 94 26 chr4 51429962 51430510 -104199610 + MLT1E LTR MaLR 60 631 -23 5 977 3275 116 11 36 chr4 51430912 51431466 -104198654 - L1_Mur1 LINE L1 -1473 4413 3874 5 977 458 197 1 79 chr4 51431471 51431607 -104198513 + Lx3B LINE L1 6869 7009 0 5 977 30 0 0 0 chr4 51433761 51433791 -104196329 + AT_rich Low_complexity Low_complexity 1 30 0 5 977 407 322 58 58 chr4 51434466 51434621 -104195499 + RSINE1 SINE B4 8 162 -3 5 977 917 324 61 7 chr4 51434682 51435089 -104195031 + Lx8 LINE L1 6606 7034 -439 5 977 3471 241 90 15 chr4 51436069 51436980 -104193140 + Lx6 LINE L1 6480 7458 -2 5 977 564 329 146 7 chr4 51437436 51437838 -104192282 + Lx8 LINE L1 6670 7127 -346 5 977 262 0 0 50 chr4 51439137 51439177 -104190943 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 977 381 43 0 0 chr4 51439244 51439291 -104190829 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 977 793 303 107 14 chr4 51439742 51440310 -104189810 - Lx6 LINE L1 -1667 5977 5387 5 977 2403 328 109 9 chr4 51440359 51441408 -104188712 + Lx8 LINE L1 6188 7340 -133 5 977 44 35 0 0 chr4 51441514 51441572 -104188548 + AT_rich Low_complexity Low_complexity 1 58 0 5 977 830 293 73 15 chr4 51441668 51441683 -104188437 - Lx8 LINE L1 -123 7350 7337 5 977 990 54 0 0 chr4 51441683 51441812 -104188308 + (TTCC)n Simple_repeat Simple_repeat 3 131 0 5 977 830 293 73 15 chr4 51441812 51442070 -104188050 - Lx8 LINE L1 -137 7336 7061 5 977 3024 85 37 19 chr4 51442121 51442607 -104187513 - L1Md_F2 LINE L1 -943 4934 4446 5 977 7778 64 1 7 chr4 51442591 51443761 -104186359 - L1Md_F2 LINE L1 -4 6578 5416 5 977 24 32 0 0 chr4 51443975 51444006 -104186114 + AT_rich Low_complexity Low_complexity 1 31 0 5 977 386 348 102 0 chr4 51444046 51444224 -104185896 + Charlie1 DNA MER1_type 7 203 -2578 5 977 1830 255 172 22 chr4 51444224 51444435 -104185685 - RLTR40 LTR ERVK 0 817 586 5 977 441 0 0 0 chr4 51444435 51444484 -104185636 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 977 261 0 0 0 chr4 51444484 51444512 -104185608 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 977 1830 255 172 22 chr4 51444512 51445010 -104185110 - RLTR40 LTR ERVK -232 585 2 5 977 558 348 79 40 chr4 51445211 51445666 -104184454 + Lx8 LINE L1 7001 7473 0 6 977 324 0 0 0 chr4 51446040 51446076 -104184044 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 977 10016 90 10 13 chr4 51446164 51448187 -104181933 + Lx3_Mus LINE L1 4988 7004 -5 6 977 348 377 0 0 chr4 51449028 51449158 -104180962 + B1F SINE Alu 1 130 -19 6 977 312 309 75 0 chr4 51449159 51449253 -104180867 + B3 SINE B2 19 119 -97 6 977 391 253 12 0 chr4 51449371 51449454 -104180666 + B3 SINE B2 126 209 -7 6 977 219 69 0 0 chr4 51449691 51449720 -104180400 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 6 977 261 0 0 0 chr4 51449734 51449763 -104180357 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 977 977 241 0 13 chr4 51449893 51450128 -104179992 - L1_Rod LINE L1 -955 4892 4661 6 977 747 280 86 20 chr4 51450178 51450433 -104179687 - ORR1D1 LTR MaLR -102 272 1 6 977 912 285 99 25 chr4 51450853 51451206 -104178914 + MTE2a LTR MaLR 1 379 0 6 977 1222 62 62 11 chr4 51451341 51451519 -104178601 + L1Md_F2 LINE L1 6384 6570 -12 6 977 489 341 76 36 chr4 51451683 51451987 -104178133 - MER68 LTR ERVL -44 519 204 6 977 564 325 84 27 chr4 51452786 51453121 -104176999 + ERVL-E-int LTR ERVL 2189 2542 -3125 6 977 292 323 36 43 chr4 51453412 51453551 -104176569 + RSINE1 SINE B4 3 140 -25 6 977 525 16 0 0 chr4 51453564 51453626 -104176494 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 977 297 0 0 0 chr4 51453626 51453658 -104176462 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 977 527 319 59 12 chr4 51453673 51453927 -104176193 - Lx8 LINE L1 -440 7033 6768 6 977 27 0 0 0 chr4 51454843 51454870 -104175250 + AT_rich Low_complexity Low_complexity 1 27 0 6 977 471 151 0 0 chr4 51454878 51454971 -104175149 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 977 2238 297 116 22 chr4 51455006 51456026 -104174094 + Lx9 LINE L1 6382 7496 -148 6 977 22 80 0 0 chr4 51456079 51456129 -104173991 + AT_rich Low_complexity Low_complexity 1 50 0 6 977 324 389 0 0 chr4 51456309 51456448 -104173672 + (TA)n Simple_repeat Simple_repeat 1 139 0 6 977 180 0 0 0 chr4 51456936 51456956 -104173164 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 977 360 0 0 0 chr4 51458367 51458407 -104171713 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 977 1162 297 56 26 chr4 51458676 51459201 -104170919 - Lx6 LINE L1 -29 7431 6510 6 977 23 86 0 0 chr4 51460028 51460086 -104170034 + AT_rich Low_complexity Low_complexity 1 58 0 6 977 225 0 0 0 chr4 51462555 51462580 -104167540 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 977 31 0 0 0 chr4 51462878 51462909 -104167211 + AT_rich Low_complexity Low_complexity 1 31 0 6 977 270 116 0 0 chr4 51463360 51463403 -104166717 + (CAT)n Simple_repeat Simple_repeat 3 45 0 6 977 2836 150 65 0 chr4 51463995 51464468 -104165652 + Lx2 LINE L1 6133 6636 -361 6 977 1573 300 104 2 chr4 51464772 51465329 -104164791 + Lx7 LINE L1 6695 7308 -388 6 977 504 45 0 0 chr4 51465342 51465409 -104164711 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 977 220 227 0 43 chr4 51465426 51465495 -104164625 + T-rich Low_complexity Low_complexity 3 68 0 6 977 365 256 34 0 chr4 51465611 51465728 -104164392 + Lx9 LINE L1 7517 7637 -7 6 977 1049 234 130 13 chr4 51466020 51466405 -104163715 + Lx9 LINE L1 7203 7632 -12 6 977 501 49 0 0 chr4 51466403 51466464 -104163656 - L1_Mm LINE L1 -317 5566 5506 6 977 438 133 0 85 chr4 51466432 51466514 -104163606 + L1Md_F2 LINE L1 5512 5586 -297 6 977 7776 63 0 5 chr4 51466514 51467515 -104162605 + L1Md_F2 LINE L1 5587 6582 0 6 977 1014 99 6 0 chr4 51467616 51467778 -104162342 + Lx3_Mus LINE L1 6839 7001 -8 6 977 243 0 0 0 chr4 51468288 51468315 -104161805 + (T)n Simple_repeat Simple_repeat 1 27 0 6 977 270 263 76 114 chr4 51469409 51469881 -104160239 + L1MB7 LINE L1 5523 5976 -208 6 977 23 54 0 0 chr4 51469962 51469999 -104160121 + AT_rich Low_complexity Low_complexity 1 37 0 6 977 2612 234 31 0 chr4 51470881 51471395 -104158725 - Lx6 LINE L1 -1 7459 6930 6 977 1142 62 7 0 chr4 51472174 51472320 -104157800 - B1_Mm SINE Alu 0 147 1 6 977 289 238 0 139 chr4 51472668 51472790 -104157330 + MLT1A1 LTR MaLR 303 407 -1 6 977 198 0 0 0 chr4 51474120 51474142 -104155978 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 977 25 31 0 0 chr4 51474883 51474915 -104155205 + AT_rich Low_complexity Low_complexity 1 32 0 6 977 322 42 0 0 chr4 51475879 51475927 -104154193 - L1_Mus2 LINE L1 -592 5974 5927 6 977 1338 187 21 31 chr4 51475932 51475963 -104154157 - RLTR9E LTR ERVK -119 284 256 6 977 4283 64 50 0 chr4 51475963 51476528 -104153592 + L1Md_F2 LINE L1 5987 6579 -3 6 977 1694 113 0 8 chr4 51476528 51476783 -104153337 - RLTR9E LTR ERVK -148 255 1 6 977 311 342 8 16 chr4 51476853 51476975 -104153145 + L1MD LINE L1 4799 4919 -1227 6 977 25 65 0 0 chr4 51477018 51477064 -104153056 + AT_rich Low_complexity Low_complexity 1 46 0 6 977 233 312 83 0 chr4 51477272 51477381 -104152739 + L1MD LINE L1 5529 5646 -713 6 977 395 300 29 51 chr4 51478324 51478461 -104151659 - B3A SINE B2 -7 191 58 6 977 647 253 121 12 chr4 51478432 51478773 -104151347 + RLTR12B LTR ERVK 127 504 -24 6 977 24293 135 17 4 chr4 51478978 51480304 -104149816 - L1_Mus4 LINE L1 -275 6361 5026 6 977 640 97 301 0 chr4 51480304 51480417 -104149703 - B1_Mm SINE Alu 0 147 1 6 977 24293 165 22 11 chr4 51480417 51484710 -104145410 - L1_Mus4 LINE L1 -858 5025 691 6 977 761 53 20 120 chr4 51484891 51485041 -104145079 + L1_Mus3 LINE L1 6498 6632 -6 6 977 1860 171 43 173 chr4 51485314 51485899 -104144221 - RLTR21 LTR ERVK -5 1567 1059 6 977 308 161 36 0 chr4 51485907 51485963 -104144157 - RLTR21 LTR ERVK -451 1121 1064 6 977 260 287 146 8 chr4 51485991 51486121 -104143999 - RLTR21 LTR ERVK -381 1191 1044 6 977 1176 48 7 0 chr4 51486154 51486300 -104143820 - B1_Mus2 SINE Alu 0 147 1 6 977 402 21 0 0 chr4 51486306 51486353 -104143767 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 6 977 25 0 0 0 chr4 51486353 51486378 -104143742 + AT_rich Low_complexity Low_complexity 1 25 0 6 977 5838 166 33 15 chr4 51486378 51487417 -104142703 - RLTR21 LTR ERVK -515 1057 1 6 977 942 112 0 0 chr4 51487699 51487859 -104142261 + (TG)n Simple_repeat Simple_repeat 1 160 0 6 977 231 125 0 0 chr4 51487859 51487899 -104142221 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 6 977 2634 59 0 40 chr4 51489945 51490299 -104139821 + L1Md_F3 LINE L1 6231 6570 -14 6 977 189 0 0 0 chr4 51490414 51490435 -104139685 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 6 977 30 77 0 0 chr4 51492238 51492303 -104137817 + AT_rich Low_complexity Low_complexity 1 65 0 6 977 601 75 0 0 chr4 51492386 51492466 -104137654 + B1_Mm SINE Alu 68 147 0 6 977 213 121 0 0 chr4 51492466 51492499 -104137621 + (A)n Simple_repeat Simple_repeat 1 33 0 6 977 30 59 0 0 chr4 51492517 51492568 -104137552 + AT_rich Low_complexity Low_complexity 1 51 0 6 977 33 35 0 17 chr4 51492615 51492649 -104137471 + AT_rich Low_complexity Low_complexity 1 34 0 6 977 197 65 0 31 chr4 51492649 51492681 -104137439 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 977 33 35 0 17 chr4 51492681 51492704 -104137416 + AT_rich Low_complexity Low_complexity 1 23 0 6 977 498 341 195 13 chr4 51493515 51493967 -104136153 - Tigger6a DNA MER2_type -335 748 215 6 977 328 340 9 0 chr4 51494041 51494147 -104135973 - PB1 SINE Alu -16 111 5 6 977 722 269 5 53 chr4 51495198 51495367 -104134753 - 7SK RNA RNA -89 242 83 6 977 615 254 56 196 chr4 51495367 51495954 -104134166 + RLTR16 LTR ERVK 1 505 0 6 977 722 269 5 53 chr4 51495954 51495992 -104134128 - 7SK RNA RNA -249 82 45 6 977 222 183 14 42 chr4 51496983 51497112 -104133008 + GA-rich Low_complexity Low_complexity 1 125 0 6 977 214 238 15 73 chr4 51497972 51498040 -104132080 + B4A SINE B4 2 65 -227 6 977 260 318 83 124 chr4 51498436 51498605 -104131515 - RSINE1 SINE B4 0 165 4 6 977 258 106 0 0 chr4 51500893 51500940 -104129180 + (A)n Simple_repeat Simple_repeat 1 47 0 1 977 270 0 0 0 chr4 51501367 51501397 -104128723 + (T)n Simple_repeat Simple_repeat 1 30 0 2 977 639 246 0 0 chr4 51501706 51501885 -104128235 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 977 976 95 15 0 chr4 51502374 51502511 -104127609 - B1_Mus1 SINE Alu -8 140 2 4 977 365 0 0 22 chr4 51502602 51502637 -104127483 + (GAA)n Simple_repeat Simple_repeat 1 35 0 5 977 1227 84 0 0 chr4 51502637 51502815 -104127305 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 977 365 0 0 22 chr4 51502815 51502825 -104127295 + (GAA)n Simple_repeat Simple_repeat 3 12 0 7 977 351 250 11 43 chr4 51503955 51504047 -104126073 + MTE2a LTR MaLR 5 93 -286 8 977 892 317 61 13 chr4 51504046 51504359 -104125761 + MTE2a LTR MaLR 52 379 0 8 977 376 339 129 48 chr4 51504591 51504923 -104125197 + MTEa LTR MaLR 1 359 -20 9 977 21 0 0 0 chr4 51505469 51505490 -104124630 + AT_rich Low_complexity Low_complexity 1 21 0 1 977 2840 201 89 8 chr4 51505512 51506178 -104123942 + RMER6D LTR ERVK 1 720 0 1 977 490 339 72 29 chr4 51506182 51506461 -104123659 - B4A SINE B4 0 292 2 1 122 36404 33 2 8 chr4 51507167 51512401 -104117719 + L1Md_T LINE L1 388 5585 -298 1 978 8089 46 3 0 chr4 51512402 51513393 -104116727 + L1Md_T LINE L1 5587 6580 -2 1 978 24 53 0 0 chr4 51513566 51513604 -104116516 + AT_rich Low_complexity Low_complexity 1 38 0 1 978 1125 88 0 0 chr4 51513639 51513787 -104116333 + B1_Mus1 SINE Alu 1 148 0 1 978 435 118 0 0 chr4 51513787 51513872 -104116248 + (A)n Simple_repeat Simple_repeat 1 85 0 1 978 286 290 106 28 chr4 51514742 51514884 -104115236 - MLT2B2 LTR ERVL -362 153 1 1 978 225 94 0 0 chr4 51515435 51515467 -104114653 + (A)n Simple_repeat Simple_repeat 1 32 0 1 978 400 290 88 14 chr4 51515681 51515828 -104114292 - RMER5 LTR ERV1 -35 499 342 1 978 4947 78 55 27 chr4 51515860 51516672 -104113448 - Lx3_Mus LINE L1 -652 6357 5555 2 978 240 276 145 30 chr4 51516674 51516805 -104113315 - RMER5 LTR ERV1 -278 256 111 1 978 22 43 0 21 chr4 51518499 51518512 -104111608 + AT_rich Low_complexity Low_complexity 1 13 0 2 978 2408 133 2 22 chr4 51518512 51518912 -104111208 + Lx2 LINE L1 6605 6996 -1 2 978 22 43 0 21 chr4 51518912 51518945 -104111175 + AT_rich Low_complexity Low_complexity 1 33 0 2 978 441 0 0 0 chr4 51519131 51519180 -104110940 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 978 739 175 32 0 chr4 51519305 51519431 -104110689 + B1_Mur1 SINE Alu 7 136 -13 2 978 510 31 0 0 chr4 51519432 51519496 -104110624 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 978 1207 108 6 6 chr4 51521841 51522018 -104108102 + B2_Mm2 SINE B2 5 181 -14 2 978 459 0 0 0 chr4 51522018 51522069 -104108051 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 978 314 345 175 28 chr4 51522600 51522743 -104107377 - RSINE1 SINE B4 0 165 2 2 978 251 285 140 83 chr4 51522827 51522984 -104107136 - B4A SINE B4 0 292 127 3 978 3772 261 74 14 chr4 51523685 51523850 -104106270 + Lx9 LINE L1 6302 6468 -1176 3 978 5512 90 94 1 chr4 51523850 51524640 -104105480 + L1_Mus3 LINE L1 5770 6632 -6 3 978 3772 261 74 14 chr4 51524640 51525593 -104104527 + Lx9 LINE L1 6469 7486 -158 3 978 21 36 0 0 chr4 51525681 51525709 -104104411 + AT_rich Low_complexity Low_complexity 1 28 0 3 978 465 356 86 34 chr4 51526321 51526647 -104103473 + MLT1H LTR MaLR 52 394 -155 3 978 542 96 0 0 chr4 51527460 51527543 -104102577 - L1_Mus2 LINE L1 -1 6565 6483 3 978 755 225 25 32 chr4 51527612 51527816 -104102304 - B2_Mm2 SINE B2 -4 212 5 3 978 1274 271 79 33 chr4 51528336 51528794 -104101326 - Lx9 LINE L1 -436 7208 6730 3 978 266 210 49 0 chr4 51528935 51529016 -104101104 - Charlie5 DNA MER1_type -23 2601 2517 3 978 32 43 0 0 chr4 51529116 51529162 -104100958 + AT_rich Low_complexity Low_complexity 1 46 0 3 978 522 299 4 66 chr4 51529297 51529523 -104100597 - Lx9 LINE L1 -475 7169 6958 4 978 521 310 57 9 chr4 51529948 51530176 -104099944 - Lx9 LINE L1 -703 6941 6703 4 978 551 316 89 9 chr4 51530183 51530397 -104099723 - Lx9 LINE L1 -1067 6577 6347 4 978 438 69 0 0 chr4 51530421 51530479 -104099641 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 978 1497 80 0 0 chr4 51530540 51530740 -104099380 - L1_Mus1 LINE L1 -1 6566 6367 4 978 394 75 30 0 chr4 51531444 51531511 -104098609 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 978 306 125 0 0 chr4 51531548 51531596 -104098524 + (T)n Simple_repeat Simple_repeat 1 48 0 4 978 1093 75 7 0 chr4 51531598 51531744 -104098376 - B1_Mus2 SINE Alu 0 147 1 4 978 355 294 73 0 chr4 51531756 51531865 -104098255 - B3A SINE B2 -81 117 1 4 978 374 307 61 67 chr4 51533440 51533604 -104096516 + RSINE1 SINE B4 3 165 0 4 978 6429 96 19 0 chr4 51533682 51534592 -104095528 - L1_Mus3 LINE L1 -2 6636 5710 4 978 1457 277 57 116 chr4 51534772 51535338 -104094782 - Lx8 LINE L1 -17 7456 6928 4 978 3608 63 2 17 chr4 51535338 51535820 -104094300 + L1_Mus1 LINE L1 6093 6567 0 5 978 1457 277 57 116 chr4 51535820 51536058 -104094062 - Lx8 LINE L1 -546 6927 6699 4 978 34 55 0 0 chr4 51536767 51536822 -104093298 + AT_rich Low_complexity Low_complexity 1 55 0 5 978 3921 115 34 12 chr4 51537819 51537892 -104092228 - L1_Mur1 LINE L1 -1442 4444 4367 5 978 2822 106 10 2 chr4 51537892 51538310 -104091810 + BGLII LTR ERVK 1 421 0 5 978 3921 115 34 12 chr4 51538310 51538880 -104091240 - L1_Mur1 LINE L1 -1520 4366 3787 5 978 3734 149 44 6 chr4 51538880 51539514 -104090606 + Lx3A LINE L1 6324 6981 0 5 978 264 122 0 0 chr4 51539529 51539570 -104090550 + (TAG)n Simple_repeat Simple_repeat 1 41 0 5 978 534 82 14 0 chr4 51540629 51540702 -104089418 + L1_Mus1 LINE L1 6095 6168 -399 5 978 306 0 0 0 chr4 51540785 51540819 -104089301 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 978 369 0 0 0 chr4 51540819 51540859 -104089261 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 978 961 256 51 71 chr4 51541172 51541639 -104088481 + L1_Mur3 LINE L1 4469 4926 -954 5 978 2794 68 39 10 chr4 51541639 51542024 -104088096 + MTA_Mm LTR MaLR 1 396 0 6 978 2225 81 0 0 chr4 51542024 51542334 -104087786 + MTA_Mm-int LTR MaLR 1 310 -788 6 978 574 28 14 0 chr4 51542328 51542400 -104087720 + MTB LTR MaLR 328 400 0 6 978 2196 156 10 57 chr4 51542496 51542898 -104087222 - Lx5 LINE L1 -503 6547 6165 6 978 3089 301 32 18 chr4 51542939 51544015 -104086105 + Lx7 LINE L1 5942 7033 -663 6 978 303 346 30 15 chr4 51544039 51544171 -104085949 + Lx8 LINE L1 7107 7240 -233 6 978 295 169 28 0 chr4 51544354 51544425 -104085695 + GA-rich Low_complexity Low_complexity 6 78 0 6 978 1911 364 44 47 chr4 51544550 51545663 -104084457 + Lx8 LINE L1 6206 7319 -154 6 978 615 78 0 0 chr4 51545663 51545753 -104084367 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 978 1911 364 44 47 chr4 51545753 51545908 -104084212 + Lx8 LINE L1 7320 7470 -3 6 978 414 0 0 0 chr4 51547530 51547576 -104082544 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 978 1819 81 11 8 chr4 51549453 51549714 -104080406 - L1Md_F2 LINE L1 0 6582 6321 6 978 1864 214 45 26 chr4 51549717 51550135 -104079985 - RMER10A LTR ERVL -16 426 1 7 978 814 294 107 10 chr4 51550918 51551210 -104078910 - MTE2b LTR MaLR -67 312 8 7 978 812 247 25 21 chr4 51551716 51551952 -104078168 + MER67C LTR ERV1 475 711 0 7 978 236 304 0 42 chr4 51552245 51552341 -104077779 + CT-rich Low_complexity Low_complexity 5 96 0 7 978 188 0 74 0 chr4 51553061 51553088 -104077032 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 978 1147 49 0 7 chr4 51553291 51553426 -104076694 + B1_Mus1 SINE Alu 2 136 -12 7 978 351 0 0 0 chr4 51553426 51553465 -104076655 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 7 978 224 235 0 66 chr4 51553895 51553986 -104076134 + GA-rich Low_complexity Low_complexity 3 87 0 7 978 620 304 30 66 chr4 51555546 51555820 -104074300 - MT2B LTR ERVL 0 601 340 7 978 243 0 0 0 chr4 51555820 51555847 -104074273 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 978 620 304 30 66 chr4 51555847 51555875 -104074245 - MT2B LTR ERVL -262 339 311 7 978 241 229 21 0 chr4 51555880 51555928 -104074192 - MT2B LTR ERVL -449 84 36 7 978 495 60 0 0 chr4 51557101 51557168 -104072952 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 978 186 133 0 0 chr4 51557280 51557310 -104072810 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 8 978 738 330 50 35 chr4 51557328 51557611 -104072509 - B4A SINE B4 0 292 6 8 978 288 0 0 0 chr4 51559138 51559170 -104070950 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 978 1329 25 0 0 chr4 51560024 51560183 -104069937 + B2_Mm1a SINE B2 2 160 -33 8 978 468 0 0 0 chr4 51560183 51560235 -104069885 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 8 978 206 250 0 0 chr4 51560275 51560327 -104069793 + A-rich Low_complexity Low_complexity 1 52 0 8 978 666 267 89 54 chr4 51560588 51560901 -104069219 + MER67C LTR ERV1 26 349 -362 8 978 296 191 12 0 chr4 51560912 51560996 -104069124 + (TA)n Simple_repeat Simple_repeat 1 85 0 8 978 383 269 173 47 chr4 51561141 51561332 -104068788 - B3 SINE B2 0 216 2 8 978 367 273 25 49 chr4 51561332 51561486 -104068634 + MER67C LTR ERV1 562 711 0 8 978 2469 243 43 68 chr4 51561901 51562642 -104067478 - Lx5 LINE L1 -11 7039 6317 9 978 207 0 0 0 chr4 51562642 51562665 -104067455 + (T)n Simple_repeat Simple_repeat 1 23 0 9 978 1703 124 52 0 chr4 51562676 51562943 -104067177 - ORR1A2 LTR MaLR 0 327 47 9 978 4955 182 10 22 chr4 51562966 51563969 -104066151 - L1_Mur2 LINE L1 -551 5326 4336 9 978 5656 164 16 0 chr4 51563969 51565029 -104065091 + L1_Mur2 LINE L1 3245 4321 -1556 9 978 286 164 0 18 chr4 51565030 51565086 -104065034 - ORR1A2 LTR MaLR -270 57 3 9 978 8103 195 31 7 chr4 51565089 51566234 -104063886 - Lx5 LINE L1 -743 6307 5115 9 978 3406 30 2 0 chr4 51566234 51566629 -104063491 - MTA_Mm LTR MaLR 0 396 1 9 978 8103 184 10 6 chr4 51566629 51567423 -104062697 - Lx5 LINE L1 -763 5114 4313 9 978 4106 196 53 42 chr4 51567948 51568811 -104061309 + RMER19B LTR ERVK 1 873 -29 9 978 9136 75 2 1 chr4 51568811 51570046 -104060074 - L1Md_F2 LINE L1 -958 4925 3690 9 978 4750 64 0 0 chr4 51570039 51570646 -104059474 + L1Md_F2 LINE L1 4980 5586 -297 9 978 8066 43 3 3 chr4 51570646 51571638 -104058482 + L1Md_F2 LINE L1 5587 6578 -4 9 978 419 234 63 91 chr4 51572013 51572234 -104057886 - L1MC2 LINE L1 -13 6331 6117 9 978 335 277 114 48 chr4 51572346 51572513 -104057607 - L1MC2 LINE L1 -397 5947 5770 9 978 643 256 53 32 chr4 51573209 51573439 -104056681 - L1MCa LINE L1 -5977 774 573 9 978 277 403 8 0 chr4 51574163 51574282 -104055838 + ID_B1 SINE B4 94 213 -11 9 978 808 296 95 30 chr4 51574290 51574653 -104055467 + MTD LTR MaLR 18 399 -20 1 978 210 143 0 0 chr4 51574955 51574990 -104055130 + (A)n Simple_repeat Simple_repeat 1 35 0 1 978 1625 239 42 71 chr4 51575407 51575885 -104054235 - RLTR28B LTR ERVL -12 469 6 1 978 1266 248 88 23 chr4 51575925 51576268 -104053852 + ORR1D2 LTR MaLR 1 365 -5 1 978 1019 269 142 11 chr4 51576429 51576782 -104053338 - MTD LTR MaLR -20 399 1 1 978 306 164 0 0 chr4 51577126 51577181 -104052939 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 978 238 350 65 32 chr4 51579009 51579133 -104050987 - MLT1A1 LTR MaLR -270 138 11 1 978 207 0 0 0 chr4 51579787 51579810 -104050310 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 978 13779 88 27 54 chr4 51580742 51580946 -104049174 - Lx3_Mus LINE L1 -1024 5985 5793 1 978 319 21 0 40 chr4 51580946 51580996 -104049124 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 978 867 96 0 146 chr4 51580996 51581154 -104048966 - B1_Mm SINE Alu -12 135 1 1 978 13779 104 25 10 chr4 51581154 51583161 -104046959 - Lx3_Mus LINE L1 -91 5795 3749 1 978 6696 68 4 3 chr4 51583139 51584464 -104045656 + L1Md_F LINE L1 387 1712 -4171 1 978 7022 161 31 16 chr4 51584462 51585835 -104044285 - Lx3_Mus LINE L1 -4486 1400 3 1 978 3512 186 57 1 chr4 51585834 51586650 -104043470 - L1_Mur3 LINE L1 -4436 1444 580 1 978 239 181 56 122 chr4 51586651 51586758 -104043362 + MER70B LTR ERVL 20 119 -459 1 978 786 198 37 0 chr4 51586761 51586923 -104043197 - L1_Mur3 LINE L1 -7510 218 51 1 978 284 259 91 45 chr4 51588312 51588466 -104041654 + L1MA6 LINE L1 6022 6182 -118 1 978 986 373 6 0 chr4 51589356 51589683 -104040437 - MER44B DNA MER2_type -215 335 7 1 978 2672 63 11 19 chr4 51590290 51590660 -104039460 - L1_Mus2 LINE L1 -2 6564 6198 1 978 929 138 103 0 chr4 51590725 51590920 -104039200 - Lx9 LINE L1 -5 7639 7425 1 978 280 114 0 0 chr4 51590962 51591006 -104039114 - Lx9 LINE L1 -298 7346 7303 1 978 184 137 19 19 chr4 51591599 51591651 -104038469 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 978 372 323 109 21 chr4 51592057 51592250 -104037870 + MLT1A1 LTR MaLR 175 384 -24 1 978 828 256 59 44 chr4 51592219 51592608 -104037512 + MT2B LTR ERVL 46 601 0 1 978 2386 301 53 39 chr4 51593246 51594214 -104035906 + Lx7 LINE L1 6326 7306 -390 1 978 297 0 0 0 chr4 51594238 51594271 -104035849 + (TAG)n Simple_repeat Simple_repeat 3 35 0 1 978 1234 56 6 11 chr4 51594375 51594556 -104035564 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 978 28 48 0 0 chr4 51594641 51594683 -104035437 + AT_rich Low_complexity Low_complexity 1 42 0 1 978 210 71 0 0 chr4 51594883 51594911 -104035209 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 1 978 1033 238 127 0 chr4 51594959 51595283 -104034837 - Lx9 LINE L1 -10 7634 7270 1 978 1061 216 45 19 chr4 51595657 51595921 -104034199 + Lx4B LINE L1 6739 7009 -49 1 978 580 328 26 45 chr4 51596033 51596298 -104033822 + L1M4b LINE L1 3 262 -7072 1 978 1338 296 106 52 chr4 51596307 51597682 -104032438 + L1M4b LINE L1 4236 5684 -1322 1 978 343 259 103 30 chr4 51597708 51597911 -104032209 + L1M4b LINE L1 5954 6171 -835 1 978 231 36 0 0 chr4 51597942 51597970 -104032150 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 978 324 0 0 0 chr4 51598306 51598342 -104031778 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 1 978 253 109 36 0 chr4 51598355 51598410 -104031710 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 1 978 277 246 29 0 chr4 51598418 51598487 -104031633 + A-rich Low_complexity Low_complexity 4 74 0 1 978 2713 149 36 2 chr4 51598493 51598969 -104031151 + Lx2 LINE L1 6505 6996 -1 1 978 499 310 14 5 chr4 51599004 51599218 -104030902 - L1MA4 LINE L1 -411 5889 5674 1 978 288 70 0 0 chr4 51599467 51599510 -104030610 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 978 21 0 0 0 chr4 51600010 51600031 -104030089 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 285 158 0 0 chr4 51600392 51600449 -104029671 - L1_Mus3 LINE L1 -8 6630 6574 1 978 10823 27 0 1 chr4 51600453 51602398 -104027722 - L1Md_A LINE L1 0 6582 4639 1 978 3803 24 15 0 chr4 51602379 51602841 -104027279 + L1Md_A LINE L1 4174 4642 -1241 1 978 8511 142 13 10 chr4 51602838 51604184 -104025936 - Lx2 LINE L1 -44 6953 5604 1 978 1009 254 0 0 chr4 51604941 51605150 -104024970 + Lx6 LINE L1 6997 7205 -255 1 978 1552 251 49 42 chr4 51605150 51605599 -104024521 + RLTR28B LTR ERVL 1 452 -29 1 978 295 274 9 18 chr4 51606314 51606438 -104023682 + L1M2 LINE L1 5723 5845 -458 1 978 2777 181 31 13 chr4 51607391 51607997 -104022123 - L1_Mur3 LINE L1 -1596 4284 3668 1 978 889 189 10 5 chr4 51608024 51608216 -104021904 - Lx6 LINE L1 -1381 4499 4307 1 978 585 167 18 0 chr4 51608217 51608331 -104021789 + Lx6 LINE L1 4515 4630 -1247 1 978 1576 196 24 42 chr4 51608328 51608706 -104021414 + Lx6 LINE L1 4784 5154 -726 1 978 3431 213 35 55 chr4 51608702 51608895 -104021225 + Lx6 LINE L1 5540 5727 -153 1 978 1105 75 0 7 chr4 51608895 51609042 -104021078 + B1_Mm SINE Alu 2 147 0 1 978 3431 250 28 77 chr4 51609042 51609963 -104020157 + Lx6 LINE L1 5724 6604 -856 1 978 3639 130 7 18 chr4 51609960 51610515 -104019605 + Lx LINE L1 5809 6357 -297 1 978 3239 256 29 29 chr4 51610529 51611327 -104018793 + Lx6 LINE L1 6642 7439 -21 1 978 539 176 0 0 chr4 51612527 51612612 -104017508 - Lx6 LINE L1 -619 6841 6757 1 978 234 0 0 0 chr4 51613166 51613192 -104016928 + (A)n Simple_repeat Simple_repeat 1 26 0 1 978 837 107 0 48 chr4 51613365 51613532 -104016588 - RMER17B LTR ERVK -488 470 312 1 978 340 175 0 0 chr4 51613556 51613613 -104016507 - RMER10B LTR ERVL 0 398 342 1 978 333 0 0 0 chr4 51613617 51613654 -104016466 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 978 7403 156 39 10 chr4 51613654 51614413 -104015707 - Lx3C LINE L1 -6 6970 6178 1 978 3252 58 0 2 chr4 51614413 51614814 -104015306 - MTB LTR MaLR 0 400 1 1 978 9356 159 24 15 chr4 51614814 51616794 -104013326 - Lx3C LINE L1 -799 6177 4199 1 978 1151 147 95 0 chr4 51616795 51617027 -104013093 + Lx3C LINE L1 3930 4183 -1703 1 978 640 187 90 39 chr4 51617027 51617183 -104012937 - RMER10B LTR ERVL -41 357 194 1 978 1435 168 8 4 chr4 51617162 51617425 -104012695 - RMER10B LTR ERVL -134 264 1 1 978 209 33 33 0 chr4 51618020 51618050 -104012070 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 978 331 300 141 5 chr4 51618173 51618357 -104011763 - MIRb SINE MIR -1 261 66 1 978 414 248 38 9 chr4 51618803 51618909 -104011211 - Lx9 LINE L1 -1017 6627 6519 1 978 2389 107 21 18 chr4 51619070 51619107 -104011013 - Lx3_Mus LINE L1 -1032 5977 5942 1 978 2912 119 35 11 chr4 51619107 51619567 -104010553 - Lx3A LINE L1 -6 6975 6505 1 978 3359 95 14 2 chr4 51619567 51620093 -104010027 - Lx3_Mus LINE L1 -1068 5941 5416 1 978 23 33 0 0 chr4 51620400 51620430 -104009690 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 598 242 82 22 chr4 51620441 51620623 -104009497 + B3A SINE B2 1 193 -5 1 978 327 277 151 4 chr4 51620852 51620964 -104009156 - Lx9 LINE L1 -3 7641 7517 1 978 387 0 0 0 chr4 51620964 51621007 -104009113 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 978 327 277 151 4 chr4 51621007 51621119 -104009001 - Lx9 LINE L1 -128 7516 7386 1 978 2160 107 0 3 chr4 51621411 51621710 -104008410 - L1_Mus3 LINE L1 -214 6424 6127 1 978 1621 97 8 28 chr4 51621710 51621964 -104008156 + L1_Mus3 LINE L1 6390 6638 0 1 978 864 97 0 0 chr4 51622006 51622130 -104007990 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 1 978 181 389 42 35 chr4 51623452 51623596 -104006524 + L2c LINE L2 3059 3203 -184 1 978 434 269 46 20 chr4 51623659 51623811 -104006309 - HAL1-2a_MD LINE L1 -509 2515 2360 1 978 23 33 0 0 chr4 51624537 51624567 -104005553 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 443 336 25 0 chr4 51624570 51624692 -104005428 + B1_Mur1 SINE Alu 8 132 -17 1 978 2883 151 91 35 chr4 51625791 51626394 -104003726 - RMER6A LTR ERVK -4 752 116 1 978 3794 191 49 24 chr4 51626415 51627133 -104002987 - L1_Mur3 LINE L1 -2118 3762 3041 1 978 1136 0 22 0 chr4 51627133 51627267 -104002853 + (TTCTCC)n Simple_repeat Simple_repeat 3 139 0 1 978 3794 191 49 24 chr4 51627267 51627404 -104002716 - L1_Mur3 LINE L1 -2840 3040 2869 1 978 243 0 0 0 chr4 51627404 51627431 -104002689 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 978 450 0 0 0 chr4 51627436 51627486 -104002634 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 978 3794 191 49 24 chr4 51627486 51627601 -104002519 - L1_Mur3 LINE L1 -3017 2863 2762 1 978 581 192 0 16 chr4 51627594 51627716 -104002404 + Lx2B LINE L1 4660 4779 -1101 1 978 4576 120 32 12 chr4 51627750 51628470 -104001650 - Lx3A LINE L1 -6 6975 6242 1 978 3626 105 56 24 chr4 51628498 51628718 -104001402 + Lx3A LINE L1 5462 5689 -197 1 978 432 0 0 0 chr4 51628718 51628766 -104001354 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 978 3626 103 58 54 chr4 51628766 51629306 -104000814 + Lx3A LINE L1 5687 6222 -759 1 978 4266 194 64 25 chr4 51629297 51630399 -103999721 + Lx2B LINE L1 4796 5963 -1037 1 978 573 235 157 27 chr4 51630369 51630552 -103999568 + Lx7 LINE L1 7404 7536 -160 1 978 567 66 0 0 chr4 51630552 51630628 -103999492 + (CCTAT)n Simple_repeat Simple_repeat 3 78 0 1 978 573 256 133 19 chr4 51630628 51630772 -103999348 + Lx7 LINE L1 7537 7696 0 1 978 213 219 21 86 chr4 51631694 51631834 -103998286 + (CAAA)n Simple_repeat Simple_repeat 2 132 0 1 978 1035 181 22 8 chr4 51632232 51632537 -103997583 + RLTR28 LTR ERVL 123 524 0 1 978 334 266 13 0 chr4 51632537 51632616 -103997504 + RMER15 LTR ERVL 487 566 -9 1 978 180 0 0 0 chr4 51632622 51632642 -103997478 + (T)n Simple_repeat Simple_repeat 1 20 0 1 978 233 29 0 29 chr4 51633759 51633794 -103996326 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 978 1114 58 0 0 chr4 51633794 51633931 -103996189 - B1_Mus1 SINE Alu -9 139 3 1 978 1293 143 4 13 chr4 51633981 51634207 -103995913 - Lx LINE L1 -7 6647 6424 1 978 1353 139 0 4 chr4 51634207 51634438 -103995682 + L1_Mm LINE L1 4161 4390 -1493 1 978 299 250 6 38 chr4 51634453 51634543 -103995577 - MT2A LTR ERVL -499 102 16 1 978 30 27 0 0 chr4 51634720 51634757 -103995363 + AT_rich Low_complexity Low_complexity 1 37 0 1 978 384 22 0 0 chr4 51635041 51635086 -103995034 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 978 722 186 171 35 chr4 51635981 51636119 -103994001 - Lx9 LINE L1 -3 7641 7462 1 978 306 0 0 0 chr4 51636119 51636153 -103993967 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 978 722 186 171 35 chr4 51636153 51636271 -103993849 - Lx9 LINE L1 -183 7461 7351 1 978 510 17 0 0 chr4 51636389 51636448 -103993672 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 978 3965 249 79 10 chr4 51636488 51637506 -103992614 - Lx5 LINE L1 -4 7046 5959 1 978 327 317 63 24 chr4 51637502 51637709 -103992411 - L1MD LINE L1 -524 5835 5621 1 978 403 303 87 12 chr4 51637864 51638118 -103992002 - L1MC2 LINE L1 -159 6185 5913 1 978 843 176 25 10 chr4 51638131 51638317 -103991803 - B3 SINE B2 0 195 1 1 978 336 374 66 31 chr4 51638364 51638651 -103991469 - L1MC2 LINE L1 -498 5846 5550 1 978 247 300 18 0 chr4 51638945 51639055 -103991065 - L1MD LINE L1 -2424 3722 3611 1 978 26 82 0 0 chr4 51639494 51639555 -103990565 + AT_rich Low_complexity Low_complexity 1 61 0 1 978 486 237 17 9 chr4 51639949 51640064 -103990056 - ID_B1 SINE B4 0 224 109 1 978 731 225 20 35 chr4 51640209 51640407 -103989713 - RMER17C LTR ERVK -215 195 1 2 978 317 367 0 0 chr4 51640407 51640505 -103989615 + RSINE1 SINE B4 68 165 0 2 978 261 200 78 78 chr4 51640918 51641021 -103989099 - HAL1b LINE L1 -64 1945 1843 2 978 24 0 0 0 chr4 51641263 51641287 -103988833 + AT_rich Low_complexity Low_complexity 1 24 0 2 978 522 286 133 47 chr4 51641436 51641715 -103988405 - MTEb LTR MaLR -3 376 74 2 978 2395 128 12 75 chr4 51641927 51642039 -103988081 + RLTR11B LTR ERVK 1 115 -338 2 122 6414 46 11 1 chr4 51642039 51642841 -103987279 + L1Md_F3 LINE L1 5761 6570 -14 2 979 2395 128 12 75 chr4 51642841 51643211 -103986909 + RLTR11B LTR ERVK 116 453 0 2 979 1830 163 180 1 chr4 51643531 51644036 -103986084 - Lx2A1 LINE L1 -11 6997 6057 2 979 1020 138 0 0 chr4 51645122 51645289 -103984831 + (TTCC)n Simple_repeat Simple_repeat 3 169 0 2 979 1416 223 16 55 chr4 51645290 51645656 -103984464 - RMER10B LTR ERVL -46 352 1 2 979 416 276 89 104 chr4 51645849 51646185 -103983935 - RMER17C-int LTR ERVK -301 2937 2607 2 979 259 175 53 0 chr4 51646219 51646276 -103983844 - MYSERV6-int LTR ERVK -177 8782 8723 2 979 445 229 27 34 chr4 51646258 51646407 -103983713 - RLTR19-int LTR ERVK -2829 3308 3161 2 979 2496 202 45 18 chr4 51646439 51647009 -103983111 - RLTR19-int LTR ERVK -3130 3007 2451 2 979 256 143 0 0 chr4 51647018 51647060 -103983060 - RLTR19-int LTR ERVK -4980 1157 1116 2 979 839 245 9 29 chr4 51647972 51648182 -103981938 - RMER10B LTR ERVL 0 398 193 2 979 1876 176 49 19 chr4 51648384 51648750 -103981370 + ORR1B1 LTR MaLR 4 380 -14 2 979 289 206 16 0 chr4 51648753 51648816 -103981304 + ORR1B2 LTR MaLR 296 359 -8 2 979 211 114 0 0 chr4 51648969 51649004 -103981116 + B2_Mm1t SINE B2 5 39 -154 2 979 5777 98 35 11 chr4 51649048 51649901 -103980219 + L1_Mus3 LINE L1 5759 6632 -6 2 979 439 240 22 34 chr4 51650024 51650128 -103979992 - B1_Mur4 SINE Alu -23 126 25 2 979 21 82 0 0 chr4 51650812 51650861 -103979259 + AT_rich Low_complexity Low_complexity 1 49 0 2 979 233 390 87 14 chr4 51651535 51651673 -103978447 + RSINE1 SINE B4 14 161 -4 2 979 240 35 0 0 chr4 51651680 51651709 -103978411 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 979 370 301 89 23 chr4 51652051 51652265 -103977855 - L1MDa LINE L1 -4047 2593 2366 2 979 310 243 92 85 chr4 51652938 51652967 -103977153 - L1MDa LINE L1 -4861 1779 1745 2 979 1045 115 0 39 chr4 51652967 51653121 -103976999 - B1_Mus1 SINE Alu 0 148 1 2 979 310 243 92 85 chr4 51653121 51653244 -103976876 - L1MDa LINE L1 -4896 1744 1626 2 979 1533 263 42 42 chr4 51653246 51653655 -103976465 - MTD LTR MaLR 0 419 11 2 979 429 54 0 0 chr4 51653784 51653840 -103976280 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 2 979 532 214 24 6 chr4 51653916 51654085 -103976035 + G-rich Low_complexity Low_complexity 6 177 0 2 979 573 80 0 0 chr4 51654303 51654391 -103975729 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 979 878 305 42 15 chr4 51654392 51654655 -103975465 - B4 SINE B4 -20 272 3 2 979 297 380 52 8 chr4 51654926 51655194 -103974926 - L1MDa LINE L1 -5590 957 678 2 979 265 282 74 33 chr4 51655367 51655488 -103974632 - RLTR22_Mur LTR ERVK 0 1848 1723 2 979 423 225 194 7 chr4 51655575 51655714 -103974406 - RLTR25A LTR ERVK -3 1100 936 2 979 589 173 25 127 chr4 51655638 51655883 -103974237 + RMER17C LTR ERVK 58 277 -133 2 979 860 199 41 151 chr4 51655889 51656033 -103974087 - RLTR25A LTR ERVK -81 1022 924 2 979 189 121 0 0 chr4 51656033 51656066 -103974054 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 979 860 199 41 151 chr4 51656066 51656240 -103973880 - RLTR25A LTR ERVK -180 923 739 2 979 1523 149 43 32 chr4 51656257 51656534 -103973586 - RLTR25A LTR ERVK -783 320 41 2 979 257 281 36 12 chr4 51656549 51656632 -103973488 - RLTR25A LTR ERVK -1010 93 9 2 979 2225 232 156 35 chr4 51656637 51657473 -103972647 - RLTR22_Mur LTR ERVK -239 1609 673 2 979 681 76 0 0 chr4 51657490 51657582 -103972538 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 2 979 6309 131 21 3 chr4 51657584 51658580 -103971540 - Lx3A LINE L1 -16 6965 5952 2 979 2914 113 34 2 chr4 51658580 51659052 -103971068 + Lx3A LINE L1 5451 5930 -1051 2 979 2323 234 38 51 chr4 51659052 51659737 -103970383 - RLTR22_Mur LTR ERVK -1171 677 2 2 979 248 268 10 40 chr4 51659804 51659905 -103970215 + A-rich Low_complexity Low_complexity 5 102 0 2 979 237 234 0 0 chr4 51659905 51659969 -103970151 + GA-rich Low_complexity Low_complexity 2 65 0 2 979 284 353 77 0 chr4 51660157 51660313 -103969807 - L1MDa LINE L1 -6281 266 99 2 979 37935 30 1 0 chr4 51661103 51667872 -103962248 - L1Md_T LINE L1 0 6585 1 2 979 444 299 158 0 chr4 51668224 51668401 -103961719 + B3 SINE B2 2 206 -10 2 979 1213 242 90 18 chr4 51668932 51669322 -103960798 + RMER1B Other Other 13 449 -617 2 979 277 281 54 62 chr4 51669752 51669881 -103960239 + RLTR23 LTR ERV1 286 413 -17 2 979 864 232 62 5 chr4 51669891 51670099 -103960021 + RMER1B Other Other 418 637 -429 2 979 257 300 70 62 chr4 51670379 51670507 -103959613 + RMER10B LTR ERVL 269 397 -1 2 979 1541 239 79 10 chr4 51670511 51670917 -103959203 + RMER1B Other Other 632 1065 -1 2 979 387 222 0 20 chr4 51670978 51671079 -103959041 + Lx9 LINE L1 7483 7581 -63 2 979 268 241 35 0 chr4 51671476 51671563 -103958557 - L1MEg2 LINE L1 -6308 144 55 2 979 712 271 213 22 chr4 51672304 51672712 -103957408 + Lx7 LINE L1 7211 7696 0 2 979 1803 183 19 17 chr4 51673650 51674012 -103956108 + ORR1B2 LTR MaLR 1 363 -4 2 979 192 336 47 0 chr4 51674127 51674234 -103955886 + L2a LINE L2 3272 3383 -43 2 979 22 35 0 0 chr4 51674826 51674855 -103955265 + AT_rich Low_complexity Low_complexity 1 29 0 2 979 585 90 0 0 chr4 51675103 51675192 -103954928 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 979 889 251 5 0 chr4 51675193 51675388 -103954732 - Lx6 LINE L1 -26 7434 7239 2 979 826 201 368 0 chr4 51675575 51675844 -103954276 - ORR1D1 LTR MaLR -4 370 3 2 979 384 22 0 0 chr4 51677560 51677605 -103952515 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 979 2842 191 62 2 chr4 51677877 51678437 -103951683 - L1_Mur2 LINE L1 -125 5752 5159 2 979 2199 239 96 23 chr4 51678440 51679077 -103951043 + Lx2B LINE L1 6269 7036 -22 2 979 387 0 0 0 chr4 51679078 51679121 -103950999 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 2 979 277 173 99 0 chr4 51679139 51679220 -103950900 + L1MA5A LINE L1 5476 5564 -736 2 979 455 306 27 42 chr4 51679271 51679530 -103950590 + L1MA5A LINE L1 5665 5919 -378 2 979 21 0 0 0 chr4 51681060 51681081 -103949039 + AT_rich Low_complexity Low_complexity 1 21 0 2 979 1861 135 56 0 chr4 51681795 51682114 -103948006 + Lx3C LINE L1 6640 6976 0 2 979 185 86 0 54 chr4 51682116 51682153 -103947967 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 979 1522 249 87 91 chr4 51682385 51682934 -103947186 - RMER15 LTR ERVL 0 575 29 2 979 914 309 21 21 chr4 51683018 51683451 -103946669 - L1M3 LINE L1 -1999 4141 3709 2 979 2032 229 257 40 chr4 51685347 51685450 -103944670 - RMER1B Other Other -13 1053 952 2 979 360 0 0 0 chr4 51685450 51685490 -103944630 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 979 2032 229 257 40 chr4 51685490 51686110 -103944010 - RMER1B Other Other -115 951 174 2 979 512 328 8 30 chr4 51686131 51686263 -103943857 - RSINE1 SINE B4 -32 133 5 2 979 316 361 110 21 chr4 51687868 51688205 -103941915 - L2 LINE L2 -1080 2339 1973 2 979 238 328 0 23 chr4 51688281 51688412 -103941708 + A-rich Low_complexity Low_complexity 2 129 0 2 979 700 264 34 34 chr4 51688655 51688863 -103941257 + RMER6D LTR ERVK 120 327 -393 2 979 2353 56 36 0 chr4 51688863 51689168 -103940952 + L1_Mus1 LINE L1 6249 6564 -3 2 979 213 121 0 0 chr4 51689260 51689293 -103940827 + (CTATT)n Simple_repeat Simple_repeat 5 37 0 2 979 23 33 0 0 chr4 51690217 51690247 -103939873 + AT_rich Low_complexity Low_complexity 1 30 0 2 979 651 67 0 0 chr4 51691472 51691561 -103938559 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 979 2680 277 119 91 chr4 51691977 51693009 -103937111 + Lx6 LINE L1 6341 7402 -58 2 979 1911 215 103 73 chr4 51693009 51693600 -103936520 - RMER19C LTR ERVK 0 611 3 2 979 2680 277 119 91 chr4 51693600 51693646 -103936474 + Lx6 LINE L1 7403 7448 -12 2 979 204 282 28 0 chr4 51693849 51693920 -103936200 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 979 344 241 81 124 chr4 51694063 51694076 -103936044 - B2_Mm2 SINE B2 -3 192 181 2 979 294 29 0 0 chr4 51694076 51694111 -103936009 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 979 669 242 79 122 chr4 51694111 51694296 -103935824 - B3 SINE B2 -29 187 3 2 979 243 0 0 0 chr4 51695810 51695837 -103934283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 979 1064 153 15 69 chr4 51696290 51696332 -103933788 + B2_Mm2 SINE B2 2 39 -156 2 979 2673 94 27 39 chr4 51696332 51696740 -103933380 + RLTR9D LTR ERVK 1 403 0 2 979 1064 153 15 69 chr4 51696740 51696900 -103933220 + B2_Mm2 SINE B2 40 193 -2 2 979 2837 286 105 24 chr4 51696912 51698165 -103931955 - Lx8 LINE L1 -30 7443 6089 2 979 348 371 20 0 chr4 51698332 51698529 -103931591 - Lx7 LINE L1 -336 7360 7160 2 979 262 235 70 12 chr4 51698684 51698770 -103931350 + PB1D7 SINE Alu 21 111 -9 2 979 250 292 14 14 chr4 51699390 51699463 -103930657 - B4 SINE B4 -218 74 2 2 979 180 0 0 0 chr4 51700879 51700899 -103929221 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 979 349 312 0 0 chr4 51701006 51701083 -103929037 - B4A SINE B4 -211 81 5 2 979 209 175 0 31 chr4 51701112 51701177 -103928943 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 2 979 419 369 37 30 chr4 51701241 51701512 -103928608 - B4A SINE B4 -18 274 2 2 979 357 187 39 26 chr4 51702213 51702290 -103927830 - Lx7 LINE L1 -330 7366 7289 2 979 4857 141 18 0 chr4 51702406 51703181 -103926939 - Lx2 LINE L1 -10 6987 6199 2 979 4366 187 13 2 chr4 51703183 51704028 -103926092 + Lx2 LINE L1 4834 5687 -199 2 979 724 175 336 0 chr4 51704027 51704268 -103925852 + L1Md_Gf LINE L1 311 632 -5987 2 979 2359 91 0 0 chr4 51704268 51704609 -103925511 + L1Md_Gf LINE L1 794 1134 -5388 2 979 3060 136 30 0 chr4 51704604 51705112 -103925008 + Lx2 LINE L1 5668 6190 -807 2 979 24 53 0 0 chr4 51705534 51705572 -103924548 + AT_rich Low_complexity Low_complexity 1 38 0 2 979 622 330 128 78 chr4 51706445 51706947 -103923173 - Charlie1a DNA MER1_type -295 1160 647 2 979 405 102 0 0 chr4 51706947 51707006 -103923114 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 979 622 330 128 78 chr4 51707006 51707607 -103922513 - Charlie1a DNA MER1_type -809 646 2 2 979 347 102 186 0 chr4 51707983 51708042 -103922078 + BC1_Mm scRNA scRNA 1 70 -82 2 979 256 338 0 0 chr4 51708447 51708518 -103921602 - PB1 SINE Alu -8 119 49 2 979 337 225 17 0 chr4 51708575 51708695 -103921425 + CT-rich Low_complexity Low_complexity 3 124 0 2 979 7864 61 8 5 chr4 51709140 51710501 -103919619 - L1Md_F2 LINE L1 -2 6580 5206 2 979 4477 127 162 24 chr4 51710498 51711798 -103918322 - L1Md_A LINE L1 -3980 1903 446 3 979 24 0 0 0 chr4 51712080 51712104 -103918016 + AT_rich Low_complexity Low_complexity 1 24 0 3 979 23 54 0 0 chr4 51712579 51712616 -103917504 + AT_rich Low_complexity Low_complexity 1 37 0 3 979 43 47 0 0 chr4 51712712 51712776 -103917344 + AT_rich Low_complexity Low_complexity 1 64 0 3 979 322 170 0 0 chr4 51712776 51712829 -103917291 - RLTR15 LTR ERVK -306 53 1 3 979 655 194 15 0 chr4 51712829 51712963 -103917157 - Lx8 LINE L1 -1558 5915 5780 3 979 5761 214 38 13 chr4 51712969 51715120 -103915000 - Lx5 LINE L1 -3 7047 4827 3 979 228 35 0 0 chr4 51715122 51715151 -103914969 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 979 16380 79 10 1 chr4 51715151 51717492 -103912628 + L1VL1 LINE L1 1203 3589 -2294 3 979 2795 56 6 0 chr4 51717492 51717852 -103912268 + L1Md_F2 LINE L1 6221 6582 0 3 979 563 197 33 60 chr4 51717862 51718013 -103912107 - Lx5 LINE L1 -1059 4818 4672 3 979 5024 166 55 1 chr4 51718006 51718958 -103911162 - Lx5 LINE L1 -1384 4493 3491 3 979 2748 157 30 24 chr4 51718957 51719384 -103910736 - Lx5 LINE L1 -3200 2677 2247 3 979 959 194 32 5 chr4 51719384 51719602 -103910518 + Lx2 LINE L1 6773 6996 -1 3 979 2748 157 30 24 chr4 51719602 51719710 -103910410 - Lx5 LINE L1 -3631 2246 2141 3 979 1008 234 10 0 chr4 51719750 51719959 -103910161 + ORR1C1 LTR MaLR 160 370 -8 3 979 7052 71 14 4 chr4 51720036 51720961 -103909159 - L1Md_F2 LINE L1 -12 6570 5637 3 979 2251 45 7 0 chr4 51720958 51721232 -103908888 + L1Md_F2 LINE L1 5367 5642 -942 3 979 7193 111 5 6 chr4 51721549 51722672 -103907448 + L1_Mus4 LINE L1 5507 6627 -9 3 979 360 0 0 0 chr4 51722687 51722727 -103907393 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 979 25 75 0 0 chr4 51724300 51724353 -103905767 + AT_rich Low_complexity Low_complexity 1 53 0 3 979 452 51 0 0 chr4 51724375 51724434 -103905686 + B1_Mm SINE Alu 89 147 0 3 979 205 176 0 0 chr4 51725089 51725123 -103904997 + A-rich Low_complexity Low_complexity 2 35 0 3 979 435 180 40 115 chr4 51725446 51725672 -103904448 + RMER17C LTR ERVK 66 274 -136 3 979 332 59 20 0 chr4 51725676 51725727 -103904393 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 3 979 320 270 142 78 chr4 51726181 51726490 -103903630 + L1MB2 LINE L1 5839 6167 -4 3 979 3486 107 33 10 chr4 51726659 51727176 -103902944 - L1_Mus3 LINE L1 -6 6632 6104 3 979 1135 57 0 0 chr4 51727176 51727317 -103902803 + L1_Mus3 LINE L1 5964 6104 -534 3 979 1183 244 65 49 chr4 51727651 51728021 -103902099 + MTE2a LTR MaLR 2 377 -2 3 979 832 296 173 0 chr4 51728745 51729142 -103900978 + Lx9 LINE L1 7177 7642 -2 3 979 793 239 130 0 chr4 51729336 51729520 -103900600 + B3 SINE B2 1 208 -8 3 979 204 40 0 0 chr4 51729575 51729600 -103900520 + (ATG)n Simple_repeat Simple_repeat 2 26 0 3 979 314 344 76 22 chr4 51729683 51729795 -103900325 + Charlie24 DNA MER1_type 280 401 -2049 3 979 1338 24 12 0 chr4 51729795 51729962 -103900158 - L1Md_F2 LINE L1 0 6582 6414 3 979 314 344 76 22 chr4 51729962 51730164 -103899956 + Charlie24 DNA MER1_type 402 610 -1840 3 979 4584 75 2 0 chr4 51730746 51731361 -103898759 - L1_Mm LINE L1 -2930 2953 2338 3 979 7791 58 5 5 chr4 51731361 51732355 -103897765 + L1Md_F2 LINE L1 5587 6580 -2 3 979 239 0 0 31 chr4 51732413 51732445 -103897675 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 3 979 627 195 16 31 chr4 51732454 51732581 -103897539 - B1_Mur2 SINE Alu -21 128 4 3 979 280 260 13 170 chr4 51732581 51732602 -103897518 - MT2B LTR ERVL -322 274 151 3 979 325 287 165 6 chr4 51733357 51733539 -103896581 - B3 SINE B2 -3 213 3 3 979 656 326 6 11 chr4 51733574 51733757 -103896363 - B3A SINE B2 -16 182 1 3 979 316 97 0 0 chr4 51735636 51735767 -103894353 + L1_Mus3 LINE L1 6576 6638 0 3 979 966 326 63 31 chr4 51736324 51736834 -103893286 - Lx8 LINE L1 -380 7093 6568 3 979 231 36 0 0 chr4 51737262 51737290 -103892830 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 979 21 0 0 0 chr4 51737545 51737566 -103892554 + AT_rich Low_complexity Low_complexity 1 21 0 3 979 330 115 0 0 chr4 51737794 51737855 -103892265 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 979 487 191 37 0 chr4 51738215 51738323 -103891797 - Lx9 LINE L1 -594 7050 6960 3 979 5168 96 23 11 chr4 51738958 51740221 -103889899 + L1VL2 LINE L1 280 1555 -2060 3 979 552 147 8 17 chr4 51740223 51740341 -103889779 + Lx LINE L1 6538 6654 0 3 979 537 268 212 55 chr4 51740801 51741385 -103888735 + L1MCa LINE L1 964 1639 -4869 3 979 355 24 0 0 chr4 51743460 51743502 -103886618 - MTB_Mm LTR MaLR 0 407 366 3 979 999 87 0 0 chr4 51743504 51743631 -103886489 + L1Md_F2 LINE L1 387 513 -6103 3 979 30515 91 5 4 chr4 51743646 51748023 -103882097 + L1Md_F2 LINE L1 1206 5586 -297 3 979 7748 61 3 4 chr4 51748023 51749008 -103881112 + L1Md_F2 LINE L1 5587 6570 -12 3 979 2436 103 8 50 chr4 51749008 51749405 -103880715 - MTB_Mm LTR MaLR -27 380 1 3 979 624 235 78 56 chr4 51749428 51749608 -103880512 + B3A SINE B2 10 193 -5 3 979 3174 52 2 0 chr4 51749614 51750015 -103880105 - L1Md_A LINE L1 -1 6581 6180 3 979 1119 48 0 7 chr4 51750015 51750163 -103879957 + L1_Mm LINE L1 5168 5314 -569 3 979 200 173 39 0 chr4 51751168 51751220 -103878900 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 3 979 3117 247 121 28 chr4 51751783 51752701 -103877419 + RMER1A Other Other 3 910 -120 3 979 414 0 0 0 chr4 51752701 51752747 -103877373 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 979 3117 243 135 24 chr4 51752747 51752856 -103877264 + RMER1A Other Other 911 1014 -16 3 979 1600 238 106 11 chr4 51753171 51753486 -103876634 + Lx7 LINE L1 6733 7057 -639 3 979 333 0 0 0 chr4 51753486 51753523 -103876597 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 979 1600 238 106 11 chr4 51753523 51753658 -103876462 + Lx7 LINE L1 7058 7225 -471 3 979 509 335 148 0 chr4 51753658 51753894 -103876226 + ORR1D2 LTR MaLR 43 313 -57 3 979 294 95 0 0 chr4 51753911 51753953 -103876167 + (A)n Simple_repeat Simple_repeat 1 42 0 3 979 633 136 0 0 chr4 51754027 51754130 -103875990 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 3 979 1239 114 10 5 chr4 51754131 51754333 -103875787 - L1_Mus3 LINE L1 0 6638 6436 3 979 1629 87 69 0 chr4 51754333 51754564 -103875556 + L1_Mus3 LINE L1 6165 6411 -227 3 979 1167 256 92 35 chr4 51754562 51754851 -103875269 + Lx7 LINE L1 7248 7553 -143 3 979 438 20 0 0 chr4 51754851 51754902 -103875218 + (TTA)n Simple_repeat Simple_repeat 2 52 0 3 979 1167 256 92 35 chr4 51754902 51755034 -103875086 + Lx7 LINE L1 7554 7692 -4 3 979 294 394 93 14 chr4 51755592 51755808 -103874312 + LTR33 LTR ERVL 15 247 -268 3 979 344 289 129 25 chr4 51756576 51756739 -103873381 - L1MD2 LINE L1 -16 6343 6164 3 979 918 307 39 32 chr4 51756877 51757284 -103872836 + Lx7 LINE L1 6941 7350 -346 3 979 288 0 0 0 chr4 51757635 51757667 -103872453 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 979 3536 190 17 22 chr4 51757933 51758696 -103871424 + RLTR22_Mur LTR ERVK 1 759 -1089 3 979 308 260 9 57 chr4 51758759 51758865 -103871255 + RLTR22_Mur LTR ERVK 893 993 -855 3 979 267 103 0 0 chr4 51758873 51758912 -103871208 + (TTA)n Simple_repeat Simple_repeat 2 40 0 3 979 1896 247 67 6 chr4 51758918 51759410 -103870710 - Lx2B LINE L1 -21 6979 6458 3 979 7281 91 16 29 chr4 51759433 51760547 -103869573 - L1_Mus3 LINE L1 -6 6632 5527 3 979 4735 144 18 8 chr4 51760542 51761326 -103868794 + L1_Mus3 LINE L1 4750 5541 -342 3 979 609 207 27 48 chr4 51761489 51761636 -103868484 + RLTR22_Mur LTR ERVK 1593 1736 -112 3 979 716 225 137 42 chr4 51761638 51761878 -103868242 + Lx3C LINE L1 6729 6997 0 3 979 320 214 116 23 chr4 51761894 51761980 -103868140 + RLTR22_Mur LTR ERVK 1754 1847 -1 3 979 284 48 24 0 chr4 51761980 51762022 -103868098 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 979 1770 169 183 26 chr4 51762116 51762498 -103867622 - RLTR41 LTR ERV1 -4 442 1 3 979 27 29 0 0 chr4 51762945 51762979 -103867141 + AT_rich Low_complexity Low_complexity 1 34 0 3 979 271 379 0 0 chr4 51763489 51763576 -103866544 + PB1D10 SINE Alu 23 109 -8 3 979 634 309 87 130 chr4 51764538 51764747 -103865373 + MTD LTR MaLR 1 195 -224 3 979 1274 37 0 0 chr4 51764747 51764908 -103865212 + L1Md_A LINE L1 6422 6582 0 3 979 634 309 87 130 chr4 51764908 51765122 -103864998 + MTD LTR MaLR 196 406 -13 3 979 243 250 0 0 chr4 51765226 51765274 -103864846 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 979 180 219 0 0 chr4 51765821 51765862 -103864258 + CT-rich Low_complexity Low_complexity 1 41 0 3 979 770 295 66 51 chr4 51766064 51766657 -103863463 - L1_Rod LINE L1 -628 5219 4618 3 979 298 152 0 0 chr4 51767367 51767413 -103862707 - B1_Mus2 SINE Alu -60 87 42 3 979 1090 156 24 0 chr4 51767620 51767825 -103862295 + L1_Mur3 LINE L1 4014 4223 -1657 3 979 12150 104 31 33 chr4 51767823 51769480 -103860640 + L1Md_F LINE L1 380 2025 -3858 3 979 4276 31 2 4 chr4 51769480 51769991 -103860129 + L1Md_F3 LINE L1 6074 6583 -1 3 979 12150 74 5 44 chr4 51769991 51770946 -103859174 + L1Md_F LINE L1 2026 2953 -2930 3 979 395 150 0 12 chr4 51770947 51771028 -103859092 + L1Md_F2 LINE L1 6494 6573 -9 3 979 2800 190 54 22 chr4 51771035 51771723 -103858397 + L1_Mur3 LINE L1 4222 4931 -949 3 979 527 356 79 41 chr4 51771955 51772421 -103857699 - MLT1F-int LTR MaLR -475 1014 531 3 979 255 169 64 13 chr4 51772480 51772558 -103857562 + (TATG)n Simple_repeat Simple_repeat 3 84 0 3 979 300 53 0 0 chr4 51772693 51772731 -103857389 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 3 979 315 49 0 0 chr4 51772975 51773016 -103857104 + (T)n Simple_repeat Simple_repeat 1 41 0 3 979 1132 74 0 0 chr4 51773016 51773164 -103856956 - B1_Mus1 SINE Alu 0 148 1 3 980 246 128 0 0 chr4 51774005 51774044 -103856076 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 980 8416 127 44 11 chr4 51774060 51775610 -103854510 - Lx3C LINE L1 -3 6973 5374 3 980 7220 137 54 32 chr4 51775599 51776205 -103853915 + L1_Mur1 LINE L1 3990 4631 -1255 3 980 183 42 0 0 chr4 51776205 51776229 -103853891 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 980 7220 137 54 32 chr4 51776229 51776983 -103853137 + L1_Mur1 LINE L1 4632 5380 -506 3 980 266 340 48 41 chr4 51778212 51778359 -103851761 - MLT1B LTR MaLR -52 338 191 3 980 234 164 0 0 chr4 51778372 51778427 -103851693 + CT-rich Low_complexity Low_complexity 2 56 0 3 980 22 0 0 0 chr4 51779513 51779535 -103850585 + AT_rich Low_complexity Low_complexity 1 22 0 3 980 268 359 41 0 chr4 51781304 51781510 -103848610 + Lx8 LINE L1 7131 7425 -219 3 980 4009 150 6 77 chr4 51781554 51782286 -103847834 - L1_Mur2 LINE L1 -708 5169 4495 3 980 722 160 60 7 chr4 51782286 51782437 -103847683 - Lx3A LINE L1 0 6981 6823 3 980 4009 150 6 77 chr4 51782437 51782536 -103847584 - L1_Mur2 LINE L1 -1383 4494 4397 3 980 7362 198 16 14 chr4 51782542 51784397 -103845723 + Lx5 LINE L1 5193 7050 0 3 980 706 86 8 8 chr4 51784400 51784517 -103845603 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 3 980 285 29 0 0 chr4 51784578 51784612 -103845508 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 980 1108 175 26 0 chr4 51784770 51784959 -103845161 + Lx4A LINE L1 6643 6836 -222 4 980 1466 202 81 103 chr4 51785274 51785458 -103844662 + MTC LTR MaLR 1 193 -228 4 980 2541 72 60 8 chr4 51785458 51785809 -103844311 + L1Md_F2 LINE L1 6195 6563 -19 4 980 1466 202 81 103 chr4 51785809 51786033 -103844087 + MTC LTR MaLR 194 400 -21 4 980 480 48 0 0 chr4 51786431 51786494 -103843626 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 980 248 186 163 0 chr4 51786494 51786580 -103843540 + L1M5 LINE L1 3684 3783 -2363 4 980 423 56 0 0 chr4 51787006 51787060 -103843060 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 980 338 274 64 18 chr4 51787287 51787458 -103842662 + L1M5 LINE L1 4340 4518 -1628 4 980 3049 99 31 2 chr4 51787496 51787920 -103842200 + Lx3A LINE L1 6527 6962 -19 4 980 354 45 0 0 chr4 51787923 51787967 -103842153 + (TAAG)n Simple_repeat Simple_repeat 4 47 0 4 980 417 318 54 8 chr4 51788345 51788475 -103841645 + MTE2b LTR MaLR 2 137 -242 4 980 394 286 52 39 chr4 51788408 51788561 -103841559 + MT2A LTR ERVL 71 225 -308 4 980 658 282 72 50 chr4 51788804 51789078 -103841042 - MT2A LTR ERVL -8 593 230 4 980 288 0 0 0 chr4 51789651 51789683 -103840437 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 980 297 372 122 14 chr4 51789888 51790035 -103840085 + LFSINE_Vert SINE SINE 4 166 -293 4 980 239 322 132 24 chr4 51790622 51790873 -103839247 - L2a LINE L2 -135 3291 3014 4 980 494 296 138 28 chr4 51791222 51791576 -103838544 - L1MA6 LINE L1 -19 6281 5889 4 980 2633 26 2 253 chr4 51791647 51792168 -103837952 + RLTR10 LTR ERVK 1 390 0 4 980 562 108 11 0 chr4 51793782 51793875 -103836245 + L1_Mus1 LINE L1 6471 6564 -3 4 980 1485 68 5 0 chr4 51795024 51795216 -103834904 + B2_Mm1t SINE B2 1 193 0 4 980 3638 83 4 17 chr4 51795689 51796227 -103833893 - L1_Mm LINE L1 -3496 2387 1857 4 980 22332 86 6 5 chr4 51796225 51799368 -103830752 + L1_Mm LINE L1 2439 5615 -676 4 980 6483 117 14 3 chr4 51799368 51800350 -103829770 + L1Md_F2 LINE L1 5587 6579 -3 4 980 1082 259 32 42 chr4 51800350 51800416 -103829704 + L1_Mm LINE L1 5616 5681 -610 4 980 195 69 0 0 chr4 51800440 51800469 -103829651 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 980 189 164 13 27 chr4 51800847 51800922 -103829198 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 980 7315 69 10 2 chr4 51801094 51802501 -103827619 - L1Md_F2 LINE L1 -1 6581 5159 4 980 893 81 0 39 chr4 51802504 51802633 -103827487 + L1_Mm LINE L1 5420 5543 -340 4 980 207 100 0 0 chr4 51802633 51802663 -103827457 + (T)n Simple_repeat Simple_repeat 1 30 0 4 980 241 359 35 143 chr4 51802883 51803198 -103826922 + ORR1E LTR MaLR 73 353 -6 4 980 3003 51 10 15 chr4 51803518 51803913 -103826207 - MTA_Mm LTR MaLR -3 393 1 4 980 417 129 0 0 chr4 51803917 51803987 -103826133 + (CATA)n Simple_repeat Simple_repeat 4 73 0 4 980 1733 323 36 14 chr4 51804158 51804735 -103825385 + Tigger7 DNA MER2_type 4 593 -1898 4 980 7887 43 18 2 chr4 51805735 51807006 -103823114 - L1Md_F2 LINE L1 -1 6581 5290 4 980 295 31 0 0 chr4 51808553 51808607 -103821513 - L1_Mus2 LINE L1 0 6582 6526 4 980 1552 88 0 0 chr4 51808603 51808808 -103821312 - L1_Mus1 LINE L1 -204 6363 6159 4 980 780 11 0 0 chr4 51808887 51808976 -103821144 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 980 510 31 0 0 chr4 51809537 51809601 -103820519 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 4 980 239 396 0 10 chr4 51809858 51809955 -103820165 - RSINE1 SINE B4 -2 163 68 4 980 289 308 69 98 chr4 51809962 51810135 -103819985 - B4A SINE B4 -124 168 1 4 980 404 347 55 33 chr4 51810760 51811060 -103819060 - B4 SINE B4 -13 279 2 4 980 215 324 71 29 chr4 51811147 51811217 -103818903 - PB1D7 SINE Alu -26 94 22 4 980 31 44 0 0 chr4 51811253 51811298 -103818822 + AT_rich Low_complexity Low_complexity 1 45 0 4 980 3037 130 12 4 chr4 51811628 51812107 -103818013 - RLTR1C LTR ERV1 -20 483 1 4 980 558 41 0 0 chr4 51812228 51812301 -103817819 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 980 256 422 47 16 chr4 51812342 51812532 -103817588 + L2b LINE L2 3002 3197 -178 4 980 265 226 0 54 chr4 51812948 51813004 -103817116 - MMVL30-int LTR ERV1 -2349 1349 1297 4 980 225 0 0 0 chr4 51813011 51813036 -103817084 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 980 4597 103 3 0 chr4 51813127 51813769 -103816351 - Lx2 LINE L1 0 6997 6354 4 980 1766 124 91 24 chr4 51814759 51815089 -103815031 - Lx2 LINE L1 -22 6975 6624 4 980 214 382 47 31 chr4 51815755 51815947 -103814173 + MIRb SINE MIR 57 251 -17 4 980 459 0 0 0 chr4 51816322 51816373 -103813747 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 980 211 321 0 0 chr4 51816473 51816529 -103813591 + B1_Mur3 SINE Alu 80 135 -14 4 980 846 38 0 0 chr4 51816556 51816662 -103813458 + (GGGGA)n Simple_repeat Simple_repeat 1 106 0 4 980 4269 182 23 51 chr4 51817168 51818107 -103812013 - L1_Mur2 LINE L1 -1328 4549 3637 4 980 2341 237 41 34 chr4 51818109 51818668 -103811452 + Lx5 LINE L1 6485 7047 -3 4 980 21 0 0 0 chr4 51818669 51818690 -103811430 + AT_rich Low_complexity Low_complexity 1 21 0 4 980 656 314 19 0 chr4 51819305 51819462 -103810658 + B3 SINE B2 1 160 -38 4 980 590 89 0 11 chr4 51819462 51819553 -103810567 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 980 589 319 31 25 chr4 51819553 51819591 -103810529 + B3A SINE B2 161 197 -1 4 980 3634 110 86 0 chr4 51820277 51820815 -103809305 + MT2B2 LTR ERVL 1 584 0 4 980 182 62 0 30 chr4 51823392 51823425 -103806695 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 980 286 344 110 18 chr4 51823788 51824069 -103806051 + L1M4b LINE L1 472 778 -6126 4 980 389 277 33 25 chr4 51824402 51824524 -103805596 + L1M4b LINE L1 1127 1249 -5655 4 980 416 293 207 24 chr4 51824649 51824939 -103805181 + L1M4b LINE L1 1357 1699 -5635 4 980 27 0 0 0 chr4 51825024 51825051 -103805069 + AT_rich Low_complexity Low_complexity 1 27 0 4 980 441 0 0 0 chr4 51825297 51825346 -103804774 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 980 1312 49 0 6 chr4 51825354 51825519 -103804601 - U1 snRNA snRNA -1 164 1 4 980 480 35 0 0 chr4 51826437 51826495 -103803625 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 980 43 0 0 0 chr4 51827793 51827836 -103802284 + AT_rich Low_complexity Low_complexity 1 43 0 4 980 1513 262 46 17 chr4 51827987 51828392 -103801728 + MTD LTR MaLR 3 405 -14 4 980 1139 231 135 3 chr4 51828649 51829013 -103801107 - Lx9 LINE L1 -12 7632 7221 4 980 594 312 0 0 chr4 51829007 51829183 -103800937 - Lx9 LINE L1 -750 6894 6719 4 980 835 302 35 92 chr4 51829183 51829312 -103800808 - MTE2a LTR MaLR -76 303 172 4 980 1745 103 59 4 chr4 51829312 51829585 -103800535 - L1_Mus3 LINE L1 -7 6631 6344 4 980 835 302 35 92 chr4 51829585 51829769 -103800351 - MTE2a LTR MaLR -208 171 8 4 980 988 136 11 0 chr4 51829804 51829980 -103800140 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 980 227 333 26 61 chr4 51830765 51830880 -103799240 + ID_B1 SINE B4 82 192 -32 4 980 378 0 0 0 chr4 51830889 51830931 -103799189 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 980 189 132 0 0 chr4 51830942 51830980 -103799140 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 980 751 308 0 0 chr4 51830987 51831169 -103798951 + B3 SINE B2 1 182 -34 4 980 8679 158 33 4 chr4 51831170 51831616 -103798504 + L1_Mur1 LINE L1 2609 3060 -2826 4 980 1062 82 0 0 chr4 51831616 51831762 -103798358 + (GAA)n Simple_repeat Simple_repeat 2 147 0 4 980 8679 158 33 4 chr4 51831762 51832943 -103797177 + L1_Mur1 LINE L1 3061 4284 -1602 4 980 1423 96 0 0 chr4 51832943 51833140 -103796980 - MTB LTR MaLR -203 197 1 4 980 279 141 0 0 chr4 51833195 51833259 -103796861 + (A)n Simple_repeat Simple_repeat 1 64 0 4 980 21 36 0 0 chr4 51833903 51833931 -103796189 + AT_rich Low_complexity Low_complexity 1 28 0 4 980 316 295 15 109 chr4 51834274 51834411 -103795709 - B3 SINE B2 0 216 93 4 980 280 87 75 11 chr4 51834712 51834805 -103795315 + (TA)n Simple_repeat Simple_repeat 2 100 0 4 980 426 115 11 11 chr4 51834894 51834982 -103795138 + L1Md_F2 LINE L1 6492 6579 -3 4 980 360 266 75 68 chr4 51835171 51835304 -103794816 - MTE2b LTR MaLR 0 379 246 4 980 2884 39 0 17 chr4 51835314 51835676 -103794444 + L1Md_F2 LINE L1 6227 6582 0 4 980 21 0 0 0 chr4 51835682 51835703 -103794417 + AT_rich Low_complexity Low_complexity 1 21 0 4 980 195 308 135 36 chr4 51837603 51837714 -103792406 + MIRm SINE MIR 41 162 -114 4 980 40900 10 1 6 chr4 51838046 51844655 -103785465 - L1Md_A LINE L1 0 6582 7 4 980 573 55 0 0 chr4 51844996 51845069 -103785051 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 980 1312 44 12 4 chr4 51845526 51845778 -103784342 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 4 980 186 128 0 0 chr4 51845942 51845981 -103784139 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 4 980 275 240 204 20 chr4 51845981 51846079 -103784041 + B2_Mm1t SINE B2 40 155 -38 4 980 360 188 18 18 chr4 51848191 51848305 -103781815 + CT-rich Low_complexity Low_complexity 1 114 0 4 980 328 340 9 0 chr4 51848314 51848420 -103781700 - ID_B1 SINE B4 -20 204 98 4 980 201 108 0 0 chr4 51849643 51849680 -103780440 + (T)n Simple_repeat Simple_repeat 1 37 0 4 980 603 81 23 11 chr4 51849768 51849855 -103780265 + Lx2B LINE L1 6480 6567 -433 4 980 4316 148 42 1 chr4 51849882 51850595 -103779525 - Lx2 LINE L1 -10 6987 6246 4 980 229 276 155 20 chr4 51850595 51850743 -103779377 - Lx8 LINE L1 -19 7454 7287 4 980 284 0 28 0 chr4 51850783 51850819 -103779301 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 980 630 137 0 0 chr4 51850827 51850922 -103779198 - Lx4A LINE L1 -320 6738 6644 4 980 1595 205 26 0 chr4 51850922 51851229 -103778891 + Lx4A LINE L1 6744 7058 0 4 980 837 335 43 16 chr4 51851353 51851723 -103778397 - Lx8 LINE L1 -467 7006 6627 4 980 334 200 169 45 chr4 51851731 51851820 -103778300 + RLTR31A_Mm LTR ERVK 485 584 0 4 980 729 323 42 5 chr4 51851824 51852083 -103778037 - Lx8 LINE L1 -939 6705 6332 4 980 25 31 0 0 chr4 51852223 51852255 -103777865 + AT_rich Low_complexity Low_complexity 1 32 0 4 980 266 352 24 129 chr4 51852274 51852483 -103777637 + B3A SINE B2 1 187 -11 5 980 306 336 87 30 chr4 51852599 51852829 -103777291 - LTR16B LTR ERVL -32 431 189 5 980 6452 210 42 9 chr4 51853441 51855807 -103774313 + Lx5 LINE L1 4555 7014 -36 5 980 267 341 22 73 chr4 51856453 51856589 -103773531 + ID_B1 SINE B4 88 216 -8 5 980 560 315 78 22 chr4 51857085 51857405 -103772715 + MTD LTR MaLR 18 380 -39 5 980 261 353 45 16 chr4 51857694 51857806 -103772314 + PB1D10 SINE Alu 1 117 -32 5 980 738 303 104 29 chr4 51857975 51858322 -103771798 - Lx8 LINE L1 -885 6588 6216 5 980 5160 131 19 6 chr4 51858339 51859178 -103770942 - Lx3_Mus LINE L1 -4 7005 6156 5 980 2948 196 148 24 chr4 51859254 51859958 -103770162 + RMER19B LTR ERVK 1 791 -111 5 980 7139 161 54 4 chr4 51859962 51861831 -103768289 + Lx2B LINE L1 5014 6994 -6 5 980 37 23 0 0 chr4 51862439 51862483 -103767637 + AT_rich Low_complexity Low_complexity 1 44 0 5 980 205 185 36 18 chr4 51863706 51863761 -103766359 + CT-rich Low_complexity Low_complexity 3 58 0 5 980 219 231 0 0 chr4 51863717 51863756 -103766364 + polypyrimidine Low_complexity Low_complexity 4 42 0 5 980 389 309 139 16 chr4 51865765 51866212 -103763908 - L1MA5 LINE L1 -294 6006 5505 5 980 254 369 0 0 chr4 51866465 51866549 -103763571 + B1F1 SINE Alu 1 84 -65 5 980 2085 184 128 41 chr4 51867285 51867920 -103762200 + RMER6C LTR ERVK 1 690 0 5 980 434 239 68 23 chr4 51868145 51868278 -103761842 + Lx8 LINE L1 6392 6530 -943 5 980 243 114 0 0 chr4 51868361 51868405 -103761715 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 980 273 29 0 0 chr4 51868452 51868486 -103761634 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 980 507 118 74 21 chr4 51868486 51868581 -103761539 - Lx3A LINE L1 -12 6969 6870 5 980 1310 173 85 0 chr4 51868605 51868865 -103761255 + L1_Mur1 LINE L1 5319 5600 -286 5 980 558 227 68 0 chr4 51868856 51868988 -103761132 + Lx3B LINE L1 6830 6970 -3 5 980 232 27 54 0 chr4 51869297 51869334 -103760786 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 980 1385 215 13 58 chr4 51869762 51870119 -103760001 + MTC LTR MaLR 83 421 0 5 980 297 0 0 0 chr4 51870392 51870425 -103759695 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 980 774 105 0 0 chr4 51871187 51871301 -103758819 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 5 980 224 159 0 22 chr4 51871302 51871347 -103758773 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 980 21 71 0 0 chr4 51872129 51872171 -103757949 + AT_rich Low_complexity Low_complexity 1 42 0 5 980 360 252 104 19 chr4 51872173 51872327 -103757793 + Lx7 LINE L1 7528 7694 -2 5 980 257 242 0 0 chr4 51872745 51872836 -103757284 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 980 856 276 106 28 chr4 51872925 51873435 -103756685 + L1MA6 LINE L1 5745 6294 -6 5 980 1150 63 7 0 chr4 51873468 51873611 -103756509 + B1_Mus1 SINE Alu 4 147 -1 5 980 1100 55 0 20 chr4 51873626 51873773 -103756347 + B1_Mus1 SINE Alu 5 148 0 5 980 24 0 0 0 chr4 51873784 51873808 -103756312 + AT_rich Low_complexity Low_complexity 1 24 0 5 980 2935 102 25 2 chr4 51874481 51874915 -103755205 - L1_Mus1 LINE L1 -256 6310 5867 5 980 1448 96 24 0 chr4 51874915 51875123 -103754997 + L1_Mus1 LINE L1 6354 6566 -1 5 980 594 349 18 32 chr4 51875543 51875824 -103754296 + B4A SINE B4 1 277 -15 5 980 219 210 0 95 chr4 51875835 51875951 -103754169 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 5 980 210 329 12 50 chr4 51876887 51876967 -103753153 - ID4_ SINE ID 0 83 7 5 980 1434 143 89 0 chr4 51877039 51877298 -103752822 - Lx2 LINE L1 0 6997 6716 5 980 744 191 7 0 chr4 51877299 51877446 -103752674 - Lx2 LINE L1 -747 6250 6103 5 980 216 0 0 0 chr4 51877890 51877914 -103752206 + (A)n Simple_repeat Simple_repeat 1 24 0 5 980 23 33 0 0 chr4 51877976 51878006 -103752114 + AT_rich Low_complexity Low_complexity 1 30 0 5 980 301 256 72 130 chr4 51878028 51878235 -103751885 - L1M2 LINE L1 -1803 4340 4146 5 980 1202 279 41 56 chr4 51878338 51878421 -103751699 - L1_Mur3 LINE L1 -1784 4096 4018 5 980 1044 116 0 0 chr4 51878421 51878567 -103751553 + B1_Mus2 SINE Alu 2 147 0 5 980 1202 279 41 56 chr4 51878567 51878946 -103751174 - L1_Mur3 LINE L1 -1863 4017 3641 5 980 5468 178 8 39 chr4 51878990 51879604 -103750516 - Lx2 LINE L1 0 6997 6400 5 980 237 33 0 0 chr4 51879604 51879634 -103750486 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 5 980 5468 178 8 39 chr4 51879634 51879649 -103750471 - Lx2 LINE L1 -598 6399 6399 5 980 325 0 48 48 chr4 51879649 51879712 -103750408 + (TTG)n Simple_repeat Simple_repeat 2 64 0 5 980 5468 178 8 39 chr4 51879712 51880189 -103749931 - Lx2 LINE L1 -598 6399 5924 5 980 3554 140 25 6 chr4 51880190 51880919 -103749201 + Lx2A1 LINE L1 5168 5917 -1091 5 980 297 0 0 0 chr4 51880928 51880961 -103749159 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 5 980 2281 155 50 22 chr4 51880963 51881362 -103748758 - Lx LINE L1 -8 6646 6235 5 980 6390 92 17 5 chr4 51881362 51882253 -103747867 + RLTR13D6 LTR ERVK 1 902 0 5 980 2281 155 50 22 chr4 51882253 51882269 -103747851 - Lx LINE L1 -420 6234 6219 5 980 609 340 24 21 chr4 51882280 51882611 -103747509 + Lx8 LINE L1 6805 7136 -337 5 980 465 302 32 0 chr4 51883176 51883302 -103746818 - B1_Mur1 SINE Alu -8 141 12 5 980 211 327 0 0 chr4 51883919 51883974 -103746146 + ID4 SINE ID 2 56 -27 5 980 752 0 11 0 chr4 51883994 51884082 -103746038 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 5 980 2903 61 200 9 chr4 51884320 51884750 -103745370 + RLTR1B LTR ERV1 1 512 0 5 980 42127 18 0 0 chr4 51884750 51892306 -103737814 + MMERGLN-int LTR ERV1 1 7556 0 5 980 2927 61 200 9 chr4 51892306 51892736 -103737384 + RLTR1B LTR ERV1 1 512 0 5 980 294 365 53 40 chr4 51893515 51893666 -103736454 + MER63A DNA AcHobo 16 168 -42 5 980 497 292 40 17 chr4 51894860 51895034 -103735086 + B3A SINE B2 5 182 -16 5 980 21 0 0 0 chr4 51895039 51895060 -103735060 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 3156 151 65 24 chr4 51895604 51896267 -103733853 + RMER6C LTR ERVK 1 690 0 5 980 255 385 91 47 chr4 51896785 51897169 -103732951 - MLT1E1A LTR MaLR -11 669 269 5 980 5231 69 0 0 chr4 51898714 51899383 -103730737 - L1Md_T LINE L1 0 6582 5914 5 980 3470 19 0 0 chr4 51899383 51899797 -103730323 + L1Md_T LINE L1 5470 5883 0 5 980 5079 76 2 1 chr4 51900116 51900887 -103729233 - L1Md_T LINE L1 -651 5916 5146 5 980 1138 53 0 32 chr4 51900887 51901044 -103729076 + L1_Mus1 LINE L1 6407 6558 -9 5 980 1094 90 0 7 chr4 51901044 51901190 -103728930 + B1_Mus2 SINE Alu 1 145 -2 5 980 972 109 18 6 chr4 51901204 51901370 -103728750 + (GGAA)n Simple_repeat Simple_repeat 2 169 0 5 980 566 63 0 12 chr4 51901401 51901481 -103728639 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 5 980 414 0 0 0 chr4 51903409 51903455 -103726665 + (TTA)n Simple_repeat Simple_repeat 1 46 0 5 980 22 94 0 0 chr4 51903560 51903624 -103726496 + AT_rich Low_complexity Low_complexity 1 64 0 5 122 8088 160 16 6 chr4 51903694 51905117 -103725003 + Lx4A LINE L1 5619 7055 -3 5 981 208 194 60 0 chr4 51905117 51905184 -103724936 + A-rich Low_complexity Low_complexity 1 71 0 5 981 242 320 43 14 chr4 51907310 51907558 -103722562 + L1MC LINE L1 4366 4621 -1525 5 981 2931 22 0 128 chr4 51907566 51907987 -103722133 + IAPLTR1_Mm LTR ERVK 1 367 0 5 981 6866 87 99 71 chr4 51907987 51909257 -103720863 + IAPEz-int LTR ERVK 8 1313 -5168 5 981 27599 19 1 2 chr4 51909256 51912530 -103717590 + IAPEz-int LTR ERVK 3210 6481 0 5 981 2931 22 0 128 chr4 51912530 51912951 -103717169 + IAPLTR1_Mm LTR ERVK 1 367 0 5 981 531 94 0 30 chr4 51913099 51913198 -103716922 + L1_Mus3 LINE L1 6541 6636 -2 5 981 290 237 34 34 chr4 51913208 51913326 -103716794 + (TAGA)n Simple_repeat Simple_repeat 1 118 0 5 981 1559 232 18 44 chr4 51913332 51913720 -103716400 + ORR1C1 LTR MaLR 1 378 0 5 981 21 0 0 0 chr4 51913950 51913971 -103716149 + AT_rich Low_complexity Low_complexity 1 21 0 5 981 1526 265 84 18 chr4 51914599 51914927 -103715193 - RMER19C LTR ERVK 0 611 255 5 981 240 35 0 0 chr4 51914927 51914956 -103715164 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 981 1526 265 84 18 chr4 51914956 51915080 -103715040 - RMER19C LTR ERVK -357 254 129 5 981 625 282 7 34 chr4 51915100 51915247 -103714873 + B3 SINE B2 60 202 -14 5 981 23 0 0 0 chr4 51915266 51915289 -103714831 + AT_rich Low_complexity Low_complexity 1 23 0 5 981 1520 222 63 52 chr4 51915867 51916294 -103713826 + Lx6 LINE L1 6268 6699 -761 5 981 216 135 0 0 chr4 51918470 51918507 -103711613 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 5 981 496 308 146 29 chr4 51918574 51918959 -103711161 + L1MD LINE L1 2797 3226 -2920 5 981 246 283 35 75 chr4 51918959 51919158 -103710962 - L1M2 LINE L1 -1671 4472 4282 5 981 210 71 0 0 chr4 51919385 51919413 -103710707 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 981 269 339 51 51 chr4 51919454 51919572 -103710548 + MTE2a LTR MaLR 249 366 -13 5 981 737 293 11 32 chr4 51919682 51919869 -103710251 - B3A SINE B2 -15 183 1 5 981 245 349 12 0 chr4 51920447 51920533 -103709587 - MLT1I LTR MaLR -3 408 322 5 981 409 338 14 7 chr4 51920635 51920778 -103709342 - MLT1I LTR MaLR -258 153 10 5 981 247 73 45 79 chr4 51921387 51921476 -103708644 + CT-rich Low_complexity Low_complexity 2 87 0 5 981 671 191 2 8 chr4 51921476 51921608 -103708512 - B1_Mur4 SINE Alu -21 128 1 5 981 394 267 7 118 chr4 51921608 51921653 -103708467 - MT2B LTR ERVL -453 148 121 5 981 7137 59 12 2 chr4 51922475 51923814 -103706306 - L1Md_F2 LINE L1 -2 6580 5224 5 981 5080 85 0 3 chr4 51923808 51924527 -103705593 + L1Md_F2 LINE L1 4499 5215 -668 5 981 23 54 0 0 chr4 51924855 51924892 -103705228 + AT_rich Low_complexity Low_complexity 1 37 0 5 981 27 73 0 0 chr4 51924949 51925004 -103705116 + AT_rich Low_complexity Low_complexity 1 55 0 5 981 21 36 0 0 chr4 51925111 51925139 -103704981 + AT_rich Low_complexity Low_complexity 1 28 0 5 981 22 56 0 0 chr4 51925901 51925937 -103704183 + AT_rich Low_complexity Low_complexity 1 36 0 5 981 4300 212 8 18 chr4 51926953 51927863 -103702257 + Lx5 LINE L1 6147 7047 -3 5 981 22 0 0 0 chr4 51929685 51929707 -103700413 + AT_rich Low_complexity Low_complexity 1 22 0 5 981 28788 135 23 23 chr4 51929768 51936308 -103693812 - L1_Mus2 LINE L1 -3 6563 218 5 981 326 293 25 17 chr4 51936529 51936647 -103693473 - L2 LINE L2 -913 2506 2388 6 981 501 274 0 0 chr4 51937167 51937269 -103692851 + B1F SINE Alu 37 138 -11 6 981 2368 245 86 85 chr4 51937355 51938088 -103692032 - Lx7 LINE L1 -750 6946 6187 6 981 2009 48 0 8 chr4 51938088 51938339 -103691781 - L1Md_F2 LINE L1 -12 6570 6322 6 981 2368 245 86 85 chr4 51938339 51938491 -103691629 - Lx7 LINE L1 -1510 6186 6060 6 981 1380 269 107 6 chr4 51938506 51938974 -103691146 + Lx6 LINE L1 6943 7456 -4 6 981 492 282 24 16 chr4 51939550 51939676 -103690444 + RSINE1 SINE B4 39 165 0 6 981 420 184 0 0 chr4 51939676 51939774 -103690346 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 981 309 217 0 42 chr4 51940173 51940245 -103689875 + L1MDa LINE L1 2438 2506 -4127 6 981 427 311 143 5 chr4 51940395 51940618 -103689502 - L2 LINE L2 -625 2794 2541 6 981 242 266 0 45 chr4 51941567 51941634 -103688486 + polypyrimidine Low_complexity Low_complexity 1 64 0 6 981 22 80 0 0 chr4 51941952 51942002 -103688118 + AT_rich Low_complexity Low_complexity 1 50 0 6 981 384 289 57 43 chr4 51944611 51944752 -103685368 - MER5A DNA MER1_type -1 188 46 6 981 333 140 0 0 chr4 51944764 51944821 -103685299 + (TTG)n Simple_repeat Simple_repeat 1 57 0 6 981 1098 56 21 0 chr4 51944950 51945093 -103685027 + B1_Mm SINE Alu 2 147 0 6 981 3191 302 60 25 chr4 51945130 51946355 -103683765 - Lx8 LINE L1 -2 7471 6203 6 981 496 219 58 7 chr4 51946837 51946975 -103683145 - Lx7 LINE L1 -1794 5902 5758 6 981 1221 228 54 28 chr4 51947015 51947475 -103682645 - L1_Mur2 LINE L1 -2869 3008 2537 6 981 288 0 0 0 chr4 51948566 51948598 -103681522 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 981 27 49 0 0 chr4 51948687 51948728 -103681392 + AT_rich Low_complexity Low_complexity 1 41 0 6 981 24 67 0 0 chr4 51948876 51948921 -103681199 + AT_rich Low_complexity Low_complexity 1 45 0 6 981 251 328 59 36 chr4 51949681 51949884 -103680236 - L1MD3 LINE L1 -405 7590 7287 6 981 1685 355 88 82 chr4 51950366 51951436 -103678684 - MTE-int LTR MaLR -42 1538 498 6 981 372 43 0 0 chr4 51951436 51951482 -103678638 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 981 1685 355 88 82 chr4 51951482 51951938 -103678182 - MTE-int LTR MaLR -1083 497 3 6 981 264 77 0 0 chr4 51952173 51952212 -103677908 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 981 244 94 0 0 chr4 51952212 51952244 -103677876 + (GGA)n Simple_repeat Simple_repeat 2 33 0 6 981 360 284 44 22 chr4 51952557 51952694 -103677426 - B1F SINE Alu -9 140 1 6 981 303 276 178 22 chr4 51952826 51953011 -103677109 + B3 SINE B2 3 216 0 6 981 4409 164 92 1 chr4 51953113 51953917 -103676203 - Lx4A LINE L1 -2 7056 6180 6 981 443 245 88 0 chr4 51954086 51954188 -103675932 + PB1D9 SINE Alu 2 112 -8 6 981 201 74 0 0 chr4 51954193 51954220 -103675900 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 981 313 342 26 0 chr4 51954362 51954476 -103675644 + PB1D10 SINE Alu 1 117 0 6 981 507 189 24 0 chr4 51954793 51954920 -103675200 + CT-rich Low_complexity Low_complexity 2 131 0 6 981 27 49 0 0 chr4 51955327 51955368 -103674752 + AT_rich Low_complexity Low_complexity 1 41 0 6 981 1442 322 67 25 chr4 51955762 51956314 -103673806 + L1_Mur3 LINE L1 3072 3641 -2239 6 981 198 0 0 0 chr4 51956314 51956336 -103673784 + (CAA)n Simple_repeat Simple_repeat 3 24 0 6 981 1442 322 67 25 chr4 51956336 51956636 -103673484 + L1_Mur3 LINE L1 3642 3960 -1920 6 981 947 248 177 13 chr4 51958906 51959290 -103670830 + Lx5 LINE L1 6603 7049 -1 6 981 216 94 57 0 chr4 51959451 51959504 -103670616 + T-rich Low_complexity Low_complexity 2 57 0 6 981 2285 154 74 7 chr4 51959515 51959947 -103670173 - Lx LINE L1 -6 6648 6188 6 981 227 71 0 0 chr4 51959948 51959976 -103670144 + Lx LINE L1 6158 6185 -469 6 981 435 38 0 0 chr4 51960158 51960211 -103669909 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 981 5721 175 35 33 chr4 51960211 51962052 -103668068 - Lx4B LINE L1 -19 7039 5125 6 981 5499 141 11 11 chr4 51962053 51962784 -103667336 + L1_Mus4 LINE L1 427 1158 -5499 6 981 240 35 0 0 chr4 51962784 51962813 -103667307 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 981 22843 169 15 48 chr4 51962813 51966935 -103663185 + L1_Mus4 LINE L1 1159 5173 -710 6 981 1122 102 0 0 chr4 51966935 51967082 -103663038 + B1_Mus1 SINE Alu 2 148 0 6 981 22843 116 7 22 chr4 51967082 51968597 -103661523 + L1_Mus4 LINE L1 5174 6629 -7 6 981 336 83 0 0 chr4 51968619 51968667 -103661453 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 981 3533 148 18 2 chr4 51968670 51969273 -103660847 - Lx4B LINE L1 -764 5113 4501 6 981 464 176 0 0 chr4 51969293 51969378 -103660742 + RLTR23 LTR ERV1 6 90 -340 6 981 2110 128 32 6 chr4 51969733 51970078 -103660042 - IAPEY2_LTR LTR ERVK 0 357 4 6 981 5445 98 5 9 chr4 51970078 51970853 -103659267 - IAPEy-int LTR ERVK -7 7506 6735 6 981 3517 77 0 4 chr4 51970842 51971299 -103658821 - IAPEy-int LTR ERVK -1366 6215 5761 6 981 1943 98 0 26 chr4 51971290 51971562 -103658558 - IAPEy-int LTR ERVK -1939 5642 5378 6 981 3423 25 2 0 chr4 51971562 51971957 -103658163 - MTA_Mm LTR MaLR 0 396 1 6 981 2241 21 7 0 chr4 51971957 51972244 -103657876 - MTA_Mm-int LTR MaLR 0 1098 810 6 981 629 195 0 0 chr4 51972244 51972357 -103657763 - ETnERV2-int LTR ERVK -4659 2747 2635 6 981 467 230 88 0 chr4 51972473 51972586 -103657534 - RMER16-int LTR ERVK -5077 1060 938 6 981 1707 173 109 48 chr4 51972591 51973070 -103657050 - RMER16-int LTR ERVK -4747 659 251 6 981 952 153 38 5 chr4 51973182 51973543 -103656577 - IAPEy-int LTR ERVK -6629 952 409 6 981 22 56 0 0 chr4 51973633 51973669 -103656451 + AT_rich Low_complexity Low_complexity 1 36 0 6 981 1864 175 102 28 chr4 51973950 51974373 -103655747 - IAPEy-int LTR ERVK -7059 454 1 6 981 2376 108 11 35 chr4 51974373 51974739 -103655381 - IAPEY2_LTR LTR ERVK 0 357 1 6 981 331 224 40 0 chr4 51974747 51974823 -103655297 + RLTR23 LTR ERV1 352 430 0 6 981 3701 152 12 16 chr4 51974823 51975470 -103654650 - Lx4B LINE L1 -1373 4504 3860 6 981 446 167 0 53 chr4 51975477 51975572 -103654548 - Lx4B LINE L1 -2127 3753 3664 6 981 394 269 84 128 chr4 51976969 51977242 -103652878 + ORR1E LTR MaLR 91 351 -8 6 981 270 355 7 35 chr4 51977508 51977651 -103652469 - MLT2B2 LTR ERVL -22 540 402 6 981 189 0 0 0 chr4 51977663 51977684 -103652436 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 981 543 31 0 0 chr4 51977684 51977748 -103652372 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 981 259 284 0 159 chr4 51977760 51977873 -103652247 - MLT2B2 LTR ERVL -418 97 3 6 981 21 36 0 0 chr4 51980193 51980221 -103649899 + AT_rich Low_complexity Low_complexity 1 28 0 6 981 189 0 0 0 chr4 51980776 51980797 -103649323 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 981 1596 252 11 13 chr4 51981949 51982331 -103647789 - Lx7 LINE L1 -891 6805 6425 6 981 325 303 35 77 chr4 51982745 51982888 -103647232 - MIRb SINE MIR -68 200 64 6 981 543 227 0 0 chr4 51983517 51983645 -103646475 + (TA)n Simple_repeat Simple_repeat 2 129 0 6 981 1077 137 28 0 chr4 51983971 51984153 -103645967 + B2_Mm2 SINE B2 3 189 -6 6 981 649 340 34 4 chr4 51984242 51984478 -103645642 + MER47B DNA MER2_type 2 244 -174 6 981 524 313 54 25 chr4 51984534 51984737 -103645383 - B3 SINE B2 -2 214 6 6 981 237 290 14 14 chr4 51984751 51984821 -103645299 + MER47B DNA MER2_type 349 418 0 6 981 206 184 20 20 chr4 51984837 51984887 -103645233 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6 981 390 293 40 69 chr4 51985227 51985429 -103644691 - B3A SINE B2 -2 196 1 6 981 29 60 0 0 chr4 51986182 51986232 -103643888 + AT_rich Low_complexity Low_complexity 1 50 0 6 981 8399 47 2 2 chr4 51987213 51988571 -103641549 - L1Md_T LINE L1 -36 6961 5308 6 981 342 324 57 29 chr4 51988965 51989140 -103640980 + MER5A DNA MER1_type 7 186 -3 6 981 21 0 0 0 chr4 51989311 51989332 -103640788 + AT_rich Low_complexity Low_complexity 1 21 0 6 981 387 0 0 0 chr4 51990388 51990431 -103639689 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 981 22 0 0 0 chr4 51990503 51990525 -103639595 + AT_rich Low_complexity Low_complexity 1 22 0 6 981 1058 109 0 0 chr4 51990540 51990687 -103639433 + B1_Mus1 SINE Alu 2 148 0 6 981 189 0 0 0 chr4 51990701 51990722 -103639398 + (A)n Simple_repeat Simple_repeat 1 21 0 6 981 224 273 18 0 chr4 51990766 51990821 -103639299 + CT-rich Low_complexity Low_complexity 1 56 0 6 981 1611 272 66 13 chr4 51990821 51991353 -103638767 - Lx8 LINE L1 -247 7226 6667 6 981 455 33 0 16 chr4 51991503 51991565 -103638555 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 6 981 22 35 0 0 chr4 51992348 51992377 -103637743 + AT_rich Low_complexity Low_complexity 1 29 0 6 981 765 244 13 109 chr4 51992913 51993152 -103636968 - B3 SINE B2 0 216 1 6 981 227 278 130 0 chr4 51993431 51993546 -103636574 + MER53 DNA hAT 1 130 -63 6 981 310 215 141 28 chr4 51994095 51994272 -103635848 + L1M5 LINE L1 4232 4428 -1718 6 981 400 323 100 7 chr4 51995541 51995822 -103634298 + L1M5 LINE L1 4494 4800 -1346 6 981 21 0 0 0 chr4 51995885 51995906 -103634214 + AT_rich Low_complexity Low_complexity 1 21 0 6 981 2514 191 93 34 chr4 51995990 51996705 -103633415 - RMER6A LTR ERVK -4 716 1 6 981 277 300 51 58 chr4 51997123 51997261 -103632859 - MLT1E3 LTR MaLR -22 602 466 6 981 716 266 185 36 chr4 51997386 51997830 -103632290 - MLT1E3-int LTR MaLR -681 808 299 6 981 612 297 292 64 chr4 51998131 51998666 -103631454 - MLT1E LTR MaLR -18 662 6 6 981 424 266 110 44 chr4 51998832 51999054 -103631066 + L1MA9 LINE L1 5914 6149 -142 6 981 4375 115 8 12 chr4 51999140 51999801 -103630319 - Lx LINE L1 -4 6650 5993 6 981 627 211 99 0 chr4 52002442 52002613 -103627507 + Lx2B LINE L1 6813 7000 0 1 981 2396 71 0 0 chr4 52002717 52003040 -103627080 - L1_Mus4 LINE L1 -727 5909 5587 2 981 4753 119 14 1 chr4 52003072 52003789 -103626331 + L1_Mus4 LINE L1 5907 6632 -4 3 981 301 22 21 21 chr4 52003795 52003842 -103626278 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 981 401 392 78 39 chr4 52003919 52004389 -103625731 + MLT1F2 LTR MaLR 4 628 -52 5 981 617 385 125 12 chr4 52004509 52004924 -103625196 - MER77 LTR ERVL -91 516 55 6 981 280 369 30 124 chr4 52005171 52005437 -103624683 + LTR41 LTR ERVL 92 332 -436 7 981 22 35 0 0 chr4 52005812 52005841 -103624279 + AT_rich Low_complexity Low_complexity 1 29 0 8 981 2700 273 84 3 chr4 52005853 52006826 -103623294 - Lx6 LINE L1 -47 7413 6109 9 981 1098 52 26 7 chr4 52007851 52008006 -103622114 + L1Md_F3 LINE L1 6427 6584 0 1 981 348 137 68 0 chr4 52008008 52008081 -103622039 + Lx9 LINE L1 7344 7421 -223 1 981 252 0 0 0 chr4 52008149 52008177 -103621943 + (A)n Simple_repeat Simple_repeat 1 28 0 1 981 1395 228 57 22 chr4 52008263 52008577 -103621543 + ORR1D1 LTR MaLR 13 337 -37 1 981 490 355 66 24 chr4 52008895 52008939 -103621181 - MER31A LTR ERV1 -3 482 439 1 981 2806 47 3 0 chr4 52008939 52009280 -103620840 + ORR1A1 LTR MaLR 1 342 -4 1 981 490 355 66 24 chr4 52009280 52009613 -103620507 - MER31A LTR ERV1 -47 438 89 1 981 23 0 0 0 chr4 52010019 52010042 -103620078 + AT_rich Low_complexity Low_complexity 1 23 0 1 981 1760 155 186 57 chr4 52010563 52011040 -103619080 - RMER12 LTR ERVK -769 635 1 1 981 32599 85 5 6 chr4 52011298 52017462 -103612658 - L1Md_F2 LINE L1 -3 6579 420 1 981 351 0 0 0 chr4 52017577 52017616 -103612504 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 981 1460 261 39 28 chr4 52017621 52018087 -103612033 - Lx9 LINE L1 -179 7465 6995 2 981 458 329 116 71 chr4 52018347 52018727 -103611393 + MLT2B4 LTR ERVL 3 399 -15 2 981 194 361 102 29 chr4 52020002 52020139 -103609981 + L2b LINE L2 3215 3361 -14 2 981 291 119 0 0 chr4 52021554 52021596 -103608524 + B2_Mm2 SINE B2 2 43 -152 2 981 3536 111 4 5 chr4 52021596 52022153 -103607967 - L1_Mm LINE L1 -840 5043 4487 2 981 5849 86 23 0 chr4 52022153 52022966 -103607154 + L1_Mus3 LINE L1 5800 6631 -7 2 981 528 100 0 0 chr4 52022971 52023051 -103607069 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 2 981 888 159 13 6 chr4 52023051 52023209 -103606911 + B2_Mm2 SINE B2 36 194 -1 2 981 491 312 31 0 chr4 52023489 52023617 -103606503 - RSINE1 SINE B4 -31 134 3 2 981 613 235 0 0 chr4 52024164 52024279 -103605841 + B1_Mur1 SINE Alu 33 147 -2 2 981 966 341 86 58 chr4 52024949 52025575 -103604545 - MER73 LTR ERVL 0 644 1 2 981 285 51 0 0 chr4 52025814 52025853 -103604267 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 981 32459 72 3 2 chr4 52025889 52031114 -103599006 + L1Md_F3 LINE L1 396 5586 -297 3 981 7964 40 8 3 chr4 52031115 52032094 -103598026 + L1Md_F3 LINE L1 5588 6571 -13 3 981 5620 87 7 1 chr4 52033090 52033859 -103596261 + L1_Mus3 LINE L1 5852 6624 -14 3 981 414 224 52 52 chr4 52034188 52034343 -103595777 + L1Md_F LINE L1 570 724 -5795 3 981 3300 117 4 2 chr4 52034500 52034988 -103595132 + L1_Mus3 LINE L1 6145 6633 -5 3 981 824 111 23 17 chr4 52035308 52035482 -103594638 + (CA)n Simple_repeat Simple_repeat 1 175 0 3 122 1882 137 25 12 chr4 52035485 52035804 -103594316 + ORR1A3 LTR MaLR 1 323 -3 3 982 297 0 0 0 chr4 52035804 52035837 -103594283 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 982 270 0 0 0 chr4 52035837 52035866 -103594254 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 982 252 0 0 0 chr4 52036256 52036284 -103593836 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 982 459 0 0 0 chr4 52036284 52036334 -103593786 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 982 804 315 43 8 chr4 52036334 52036587 -103593533 - B4A SINE B4 -25 267 6 4 982 275 299 80 147 chr4 52037171 52037395 -103592725 - Lx8 LINE L1 -187 7286 7078 4 982 4885 60 3 0 chr4 52038130 52038744 -103591376 + L1Md_F2 LINE L1 5967 6582 0 4 982 254 280 28 9 chr4 52038760 52038868 -103591252 - Lx9 LINE L1 -1 7643 7534 4 982 21 36 0 0 chr4 52039135 52039163 -103590957 + AT_rich Low_complexity Low_complexity 1 28 0 4 982 523 305 0 55 chr4 52039234 52039397 -103590723 + B3A SINE B2 41 194 -4 4 982 216 0 0 0 chr4 52039820 52039844 -103590276 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 982 1596 180 151 8 chr4 52040848 52041126 -103588994 - RLTR12A LTR ERVK 0 568 257 4 982 592 13 26 0 chr4 52041126 52041203 -103588917 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 982 1596 180 151 8 chr4 52041203 52041282 -103588838 - RLTR12A LTR ERVK -312 256 161 4 982 1903 84 4 4 chr4 52041282 52041546 -103588574 + L1_Mus2 LINE L1 6303 6566 0 5 982 24 0 0 0 chr4 52041969 52041993 -103588127 + AT_rich Low_complexity Low_complexity 1 24 0 5 982 231 114 0 0 chr4 52042013 52042048 -103588072 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 982 28704 113 26 8 chr4 52042076 52048182 -103581938 - L1_Mus1 LINE L1 0 6567 380 5 982 240 143 0 0 chr4 52048307 52048363 -103581757 + (CAAAAA)n Simple_repeat Simple_repeat 5 60 0 5 982 274 138 0 134 chr4 52048920 52048987 -103581133 - B1_Mm SINE Alu -1 146 89 5 982 963 228 98 4 chr4 52049153 52049378 -103580742 - MTD LTR MaLR 0 419 174 5 982 552 89 0 0 chr4 52050326 52050405 -103579715 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 5 982 207 0 0 0 chr4 52050896 52050919 -103579201 + (T)n Simple_repeat Simple_repeat 1 23 0 5 982 6737 121 21 20 chr4 52050919 52052034 -103578086 - Lx3B LINE L1 0 6973 5857 5 982 2820 290 73 28 chr4 52052200 52052561 -103577559 - Lx9 LINE L1 -45 7599 7182 6 982 189 107 0 0 chr4 52052561 52052589 -103577531 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 982 2820 290 73 28 chr4 52052589 52053470 -103576650 - Lx9 LINE L1 -463 7181 6302 6 982 30 27 0 0 chr4 52053565 52053602 -103576518 + AT_rich Low_complexity Low_complexity 1 37 0 6 982 633 297 52 4 chr4 52054118 52054351 -103575769 - Lx9 LINE L1 -249 7395 7152 6 982 256 258 0 0 chr4 52054351 52054417 -103575703 + Lx9 LINE L1 7403 7468 -176 6 982 5448 31 2 0 chr4 52054567 52055229 -103574891 + L1Md_T LINE L1 5936 6582 0 6 982 267 31 0 0 chr4 52055342 52055374 -103574746 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 982 420 219 60 0 chr4 52055930 52056113 -103574007 - Lx9 LINE L1 -2 7642 7449 6 982 25 51 0 0 chr4 52056223 52056262 -103573858 + AT_rich Low_complexity Low_complexity 1 39 0 6 982 13129 137 38 25 chr4 52057326 52058467 -103571653 + L1VL4 LINE L1 194 1376 -2183 6 982 495 0 0 0 chr4 52058467 52058522 -103571598 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 982 13129 102 29 17 chr4 52058522 52060173 -103569947 + L1VL4 LINE L1 1377 3025 -534 6 982 8122 158 28 3 chr4 52060150 52062055 -103568065 + Lx2 LINE L1 5045 6996 -1 7 982 311 275 65 32 chr4 52062325 52062449 -103567671 + MIR SINE MIR 33 160 -102 7 982 23 0 0 0 chr4 52062823 52062846 -103567274 + AT_rich Low_complexity Low_complexity 1 23 0 7 982 21 0 0 0 chr4 52062908 52062929 -103567191 + AT_rich Low_complexity Low_complexity 1 21 0 7 982 452 327 95 28 chr4 52063289 52063500 -103566620 - MTEa LTR MaLR -100 279 55 7 982 255 380 68 34 chr4 52063770 52063977 -103566143 - MIRc SINE MIR -49 219 6 7 982 3148 53 176 5 chr4 52065583 52066020 -103564100 - RLTR1B LTR ERV1 0 512 1 7 982 352 282 42 17 chr4 52066112 52066231 -103563889 + MIRc SINE MIR 69 190 -78 7 982 541 334 88 41 chr4 52066776 52067116 -103563004 + ORR1E LTR MaLR 1 356 -3 7 982 328 214 9 9 chr4 52067273 52067386 -103562734 + CT-rich Low_complexity Low_complexity 1 113 0 7 982 201 188 43 14 chr4 52067446 52067516 -103562604 + (TTA)n Simple_repeat Simple_repeat 2 73 0 8 982 25 31 0 0 chr4 52067533 52067565 -103562555 + AT_rich Low_complexity Low_complexity 1 32 0 8 982 21 36 0 0 chr4 52067898 52067926 -103562194 + AT_rich Low_complexity Low_complexity 1 28 0 8 982 486 88 0 0 chr4 52068261 52068329 -103561791 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 982 342 345 0 0 chr4 52069904 52069991 -103560129 + RSINE1 SINE B4 3 89 -76 8 982 246 62 0 0 chr4 52069991 52070023 -103560097 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 982 423 0 0 0 chr4 52070023 52070069 -103560051 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 982 189 321 36 9 chr4 52070255 52070365 -103559755 - MIR SINE MIR -3 259 147 8 982 364 335 41 25 chr4 52070703 52070899 -103559221 - L1M5 LINE L1 -1098 5048 4850 8 982 235 315 82 0 chr4 52071618 52071691 -103558429 + MER34 LTR ERV1 392 470 -72 8 982 1729 231 34 29 chr4 52071696 52072107 -103558013 - MTD LTR MaLR -6 413 1 9 982 2110 177 79 62 chr4 52072389 52072906 -103557214 - RLTR24 LTR ERV1 -2 527 2 9 982 2182 71 44 0 chr4 52073494 52073790 -103556330 + L1_Mus3 LINE L1 6100 6408 -230 9 982 228 135 0 0 chr4 52073790 52073827 -103556293 + (A)n Simple_repeat Simple_repeat 1 37 0 9 982 208 255 0 0 chr4 52074595 52074642 -103555478 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 9 982 414 0 0 0 chr4 52074642 52074688 -103555432 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 982 386 299 70 53 chr4 52075092 52075265 -103554855 - MER31B LTR ERV1 -1 465 289 9 982 198 0 0 0 chr4 52075265 52075287 -103554833 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 982 386 332 48 52 chr4 52075287 52075455 -103554665 - MER31B LTR ERV1 -178 288 6 9 982 213 255 0 121 chr4 52075555 52075613 -103554507 - ID4_ SINE ID -13 70 20 9 982 585 228 0 17 chr4 52076321 52076437 -103553683 + Lx5 LINE L1 6506 6619 -431 9 982 35112 49 0 3 chr4 52076507 52081774 -103548346 + L1Md_T LINE L1 243 5589 -297 1 982 8527 27 0 0 chr4 52081774 52082769 -103547351 + L1Md_T LINE L1 5590 6584 -1 1 982 424 220 132 29 chr4 52082773 52082822 -103547298 - Tigger7 DNA MER2_type -31 2460 2401 1 982 612 0 0 0 chr4 52082822 52082890 -103547230 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 982 424 220 132 29 chr4 52082890 52082976 -103547144 - Tigger7 DNA MER2_type -91 2400 2311 1 982 520 264 28 7 chr4 52083036 52083177 -103546943 - Lx7 LINE L1 -590 7106 6963 1 982 3616 144 2 0 chr4 52083149 52083724 -103546396 - Lx2 LINE L1 -826 6171 5596 1 982 4355 166 56 14 chr4 52083724 52084525 -103545595 + Lx2B LINE L1 6163 6997 -3 1 982 4228 222 123 73 chr4 52084535 52084609 -103545511 - Lx7 LINE L1 -706 6990 6914 1 982 1545 63 0 0 chr4 52084609 52084800 -103545320 + B2_Mm1t SINE B2 2 192 -1 1 982 4228 216 101 56 chr4 52084800 52086273 -103543847 - Lx7 LINE L1 -783 6913 5370 1 982 29 28 0 0 chr4 52087457 52087493 -103542627 + AT_rich Low_complexity Low_complexity 1 36 0 1 982 384 242 40 20 chr4 52088448 52088549 -103541571 - Lx7 LINE L1 -603 7093 6991 1 982 22 35 0 0 chr4 52088827 52088856 -103541264 + AT_rich Low_complexity Low_complexity 1 29 0 1 982 1610 240 41 17 chr4 52089423 52089858 -103540262 + ORR1B1 LTR MaLR 1 394 0 1 982 252 59 0 0 chr4 52090043 52090077 -103540043 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 982 267 273 108 65 chr4 52090379 52090521 -103539599 - MLT1C LTR MaLR -193 274 114 1 982 458 61 15 0 chr4 52090737 52090803 -103539317 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 982 292 72 18 18 chr4 52091082 52091139 -103538981 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 1 982 239 295 32 32 chr4 52091309 52091372 -103538748 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 1 982 235 386 29 50 chr4 52091403 52091542 -103538578 - ID_B1 SINE B4 -8 216 81 1 982 569 279 14 29 chr4 52092281 52092421 -103537699 - ID_B1 SINE B4 -1 223 86 1 982 207 114 0 0 chr4 52092437 52092472 -103537648 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 982 37963 31 2 1 chr4 52092571 52100469 -103529651 - L1Md_T LINE L1 0 6585 1 1 982 403 288 44 25 chr4 52100469 52100629 -103529491 - B4A SINE B4 -24 268 106 1 982 403 190 30 0 chr4 52100644 52100744 -103529376 - Lx5 LINE L1 -11 7039 6937 1 982 3269 217 40 32 chr4 52100770 52101541 -103528579 - Lx5 LINE L1 -282 6768 5992 1 982 2775 148 6 0 chr4 52101505 52102067 -103528053 + Lx5 LINE L1 5397 5968 -1082 1 982 279 314 67 17 chr4 52102068 52102188 -103527932 - B4A SINE B4 -166 126 1 1 982 329 229 76 20 chr4 52102553 52102735 -103527385 - L1MA4 LINE L1 -283 6020 5834 1 982 345 159 0 0 chr4 52102738 52102801 -103527319 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 982 432 287 16 0 chr4 52102811 52102933 -103527187 - L1MA4 LINE L1 -479 5812 5689 1 982 204 67 0 0 chr4 52105016 52105046 -103525074 + (T)n Simple_repeat Simple_repeat 1 30 0 1 982 1650 145 11 4 chr4 52105524 52105801 -103524319 - L1_Mus4 LINE L1 -6 6648 6370 1 982 5152 129 23 2 chr4 52105802 52107030 -103523090 - L1_Mus4 LINE L1 -450 6186 4936 1 982 21 0 0 0 chr4 52107062 52107083 -103523037 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 1999 173 0 14 chr4 52107083 52107447 -103522673 + L1_Mm LINE L1 4781 5139 -744 1 982 216 0 0 0 chr4 52107464 52107488 -103522632 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 982 678 217 90 0 chr4 52107681 52107847 -103522273 + L1M4 LINE L1 3667 3847 -2299 1 982 514 319 16 5 chr4 52108051 52108240 -103521880 + L1M4 LINE L1 3922 4112 -2034 1 982 509 278 58 9 chr4 52108469 52108694 -103521426 + L1M4 LINE L1 5548 5783 -401 1 982 3940 101 14 0 chr4 52108696 52109252 -103520868 + L1_Mus4 LINE L1 6061 6624 -12 1 982 2905 77 21 0 chr4 52110152 52110540 -103519580 + MTA_Mm LTR MaLR 1 396 0 1 982 30 0 0 0 chr4 52111467 52111497 -103518623 + AT_rich Low_complexity Low_complexity 1 30 0 1 982 23 0 0 0 chr4 52111662 52111685 -103518435 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 23 0 0 0 chr4 52111918 52111941 -103518179 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 267 356 61 20 chr4 52112559 52112757 -103517363 + L2 LINE L2 2665 2870 -549 1 982 3275 122 20 2 chr4 52114710 52115213 -103514907 + Lx3_Mus LINE L1 5969 6480 -529 1 982 411 68 0 0 chr4 52115909 52115968 -103514152 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 982 1584 272 57 34 chr4 52116575 52117043 -103513077 + Lx7 LINE L1 6809 7280 -416 1 982 6063 66 18 2 chr4 52117043 52117461 -103512659 - RLTR13D1 LTR ERVK 0 806 388 1 982 564 15 0 0 chr4 52117461 52117526 -103512594 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 982 6063 66 18 2 chr4 52117526 52117898 -103512222 - RLTR13D1 LTR ERVK -419 387 5 1 982 1584 272 57 34 chr4 52117898 52117992 -103512128 + Lx7 LINE L1 7281 7384 -312 1 982 234 81 0 0 chr4 52118011 52118048 -103512072 + (T)n Simple_repeat Simple_repeat 1 37 0 1 982 21 36 0 0 chr4 52118109 52118137 -103511983 + AT_rich Low_complexity Low_complexity 1 28 0 1 982 1493 261 60 42 chr4 52118611 52119159 -103510961 - RLTR1 LTR ERV1 0 624 67 1 982 195 42 0 0 chr4 52119166 52119190 -103510930 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1 982 678 217 7 0 chr4 52121430 52121573 -103508547 - URR1A DNA MER1_type 0 226 83 1 982 249 329 0 0 chr4 52122186 52122271 -103507849 + L1M6 LINE L1 11 95 -6401 1 982 1211 41 0 20 chr4 52122680 52122830 -103507290 + B1_Mus1 SINE Alu 2 148 0 1 982 659 255 30 25 chr4 52123014 52123211 -103506909 - Lx6 LINE L1 -26 7434 7237 1 982 704 250 33 38 chr4 52123253 52123436 -103506684 - ORR1C2 LTR MaLR 0 384 203 1 982 207 0 0 0 chr4 52123446 52123469 -103506651 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 982 4761 220 39 61 chr4 52123469 52123928 -103506192 - ORR1C2-int LTR MaLR -3 1577 981 1 982 465 34 0 0 chr4 52123928 52123987 -103506133 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 1 982 4761 235 76 29 chr4 52123987 52124927 -103505193 - ORR1C2-int LTR MaLR -390 980 6 1 982 1659 188 93 11 chr4 52124929 52125284 -103504836 - ORR1C2 LTR MaLR 0 384 1 1 982 236 227 101 11 chr4 52125738 52125827 -103504293 - L1VL2 LINE L1 -5938 397 301 1 982 1624 96 0 25 chr4 52125826 52126038 -103504082 + Lx2B LINE L1 5836 6045 -955 1 982 4441 142 33 5 chr4 52126038 52126786 -103503334 + Lx2B LINE L1 6231 6999 -1 1 982 1624 96 0 25 chr4 52126786 52126818 -103503302 + Lx2B LINE L1 6046 6074 -926 1 982 474 91 0 0 chr4 52126933 52127010 -103503110 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 982 207 203 0 0 chr4 52127009 52127073 -103503047 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 982 225 219 0 0 chr4 52128020 52128093 -103502027 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 982 216 354 15 0 chr4 52128116 52128181 -103501939 - BC1_Mm scRNA scRNA -85 67 2 1 982 980 308 51 15 chr4 52128679 52129015 -103501105 - ORR1E LTR MaLR -7 352 5 1 982 296 348 66 24 chr4 52129504 52129763 -103500357 - L1MB3 LINE L1 -10 6173 5894 1 982 225 0 0 0 chr4 52129763 52129788 -103500332 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 982 296 348 66 24 chr4 52129788 52129982 -103500138 - L1MB3 LINE L1 -290 5893 5702 1 982 193 384 34 82 chr4 52131161 52131323 -103498797 + MIR3 SINE MIR 39 187 -21 1 982 847 276 5 0 chr4 52132400 52132596 -103497524 - B3A SINE B2 0 198 2 1 982 472 194 130 25 chr4 52133359 52133501 -103496619 - RMER1C Other Other -1 1341 1209 1 982 342 346 112 38 chr4 52134034 52134274 -103495846 + MLT1F1 LTR MaLR 15 272 -297 1 982 337 248 99 11 chr4 52134906 52135092 -103495028 + L1MA4A LINE L1 5764 5969 -331 1 982 309 358 66 0 chr4 52135094 52135245 -103494875 + RSINE1 SINE B4 3 163 -2 1 982 1619 139 15 73 chr4 52135352 52135694 -103494426 + RLTRETN_Mm LTR ERVK 1 322 0 1 982 405 0 0 0 chr4 52136153 52136198 -103493922 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 982 301 43 21 21 chr4 52136198 52136245 -103493875 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 982 316 350 25 8 chr4 52136251 52136369 -103493751 - B4A SINE B4 -10 282 163 1 982 742 216 98 0 chr4 52136546 52136740 -103493380 - RCHARR1 DNA MER1_type -233 741 529 1 982 22 35 0 0 chr4 52136980 52137009 -103493111 + AT_rich Low_complexity Low_complexity 1 29 0 1 982 29 47 0 0 chr4 52137342 52137385 -103492735 + AT_rich Low_complexity Low_complexity 1 43 0 1 982 195 42 0 0 chr4 52137612 52137636 -103492484 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 982 767 169 39 0 chr4 52138540 52138694 -103491426 - Lx7 LINE L1 0 7696 7537 1 982 574 218 127 6 chr4 52138826 52138983 -103491137 + MTEa LTR MaLR 204 379 0 1 982 225 0 0 0 chr4 52139132 52139157 -103490963 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1 982 276 213 118 13 chr4 52139208 52139284 -103490836 - B2_Mm2 SINE B2 -111 84 1 1 982 311 169 99 0 chr4 52139312 52139383 -103490737 - Lx9 LINE L1 -27 7617 7540 1 982 405 90 0 0 chr4 52139485 52139552 -103490568 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 1 982 708 83 0 0 chr4 52139569 52139678 -103490442 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 982 486 96 0 0 chr4 52140846 52140919 -103489201 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 982 4003 56 16 4 chr4 52141347 52141863 -103488257 + L1Md_F2 LINE L1 5065 5586 -297 1 982 7539 65 14 6 chr4 52141864 52142847 -103487273 + L1Md_F2 LINE L1 5588 6578 -4 1 982 1988 33 0 4 chr4 52142895 52143135 -103486985 + L1Md_F3 LINE L1 6332 6570 -14 1 982 245 222 0 133 chr4 52143963 52144098 -103486022 - Lx9 LINE L1 -15 7629 7513 1 982 4133 117 22 14 chr4 52144344 52144984 -103485136 - Lx LINE L1 -3 6651 6007 1 982 663 331 49 16 chr4 52146168 52146521 -103483599 - Lx8 LINE L1 -624 7072 6722 1 982 28 29 0 0 chr4 52148065 52148100 -103482020 + AT_rich Low_complexity Low_complexity 1 35 0 1 982 1949 249 141 139 chr4 52148673 52149526 -103480594 + Lx3C LINE L1 6196 7049 -1 1 982 826 237 52 16 chr4 52150537 52150730 -103479390 + B3 SINE B2 9 208 -8 1 982 230 288 137 46 chr4 52150849 52150980 -103479140 + MLT1D LTR MaLR 3 145 -360 1 982 532 310 14 7 chr4 52151093 52151236 -103478884 + B4A SINE B4 128 271 -21 1 982 322 346 118 11 chr4 52151352 52151615 -103478505 + B4A SINE B4 1 291 -1 1 982 4003 54 20 0 chr4 52151660 52152160 -103477960 - L1_Mus1 LINE L1 0 6567 6058 1 982 572 303 14 7 chr4 52152165 52152291 -103477829 + RSINE1 SINE B4 20 147 -18 1 982 351 0 0 0 chr4 52152291 52152330 -103477790 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 982 572 303 14 7 chr4 52152330 52152346 -103477774 + RSINE1 SINE B4 148 163 -2 1 982 2514 307 68 66 chr4 52152366 52154791 -103475329 + L1_Mur3 LINE L1 2355 4785 -1095 1 982 11358 27 0 0 chr4 52155067 52156406 -103473714 + L1Md_T LINE L1 4248 5586 -297 1 982 8946 7 0 0 chr4 52156406 52157426 -103472694 + L1Md_T LINE L1 5587 6582 0 1 982 30887 128 15 47 chr4 52157478 52160686 -103469434 + L1_Mus1 LINE L1 273 3445 -2438 2 982 387 0 0 0 chr4 52160686 52160729 -103469391 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 982 30887 99 7 4 chr4 52160729 52163330 -103466790 + L1_Mus1 LINE L1 3446 6044 -523 2 982 2332 271 37 16 chr4 52163349 52164018 -103466102 + Lx9 LINE L1 6805 7487 -157 2 982 897 259 42 78 chr4 52164083 52164560 -103465560 + Lx7 LINE L1 7234 7693 -3 2 982 826 146 83 55 chr4 52166066 52166247 -103463873 - B2_Mm2 SINE B2 -8 187 2 2 122 203 321 11 56 chr4 52166578 52166667 -103463453 - L2a LINE L2 0 3426 3342 2 983 376 331 87 0 chr4 52166783 52166967 -103463153 + MER54A LTR ERVL 5 204 -697 2 983 2987 219 85 98 chr4 52166994 52168206 -103461914 - RMER1A Other Other -5 1061 1 2 983 322 401 20 40 chr4 52168660 52168808 -103461312 + MER54A LTR ERVL 228 372 -529 2 983 893 260 62 0 chr4 52170559 52170751 -103459369 + B3 SINE B2 6 209 -7 2 983 203 270 14 0 chr4 52170767 52170841 -103459279 + A-rich Low_complexity Low_complexity 3 77 0 2 983 24 32 0 0 chr4 52170901 52170932 -103459188 + AT_rich Low_complexity Low_complexity 1 31 0 2 983 23 68 0 0 chr4 52171866 52171910 -103458210 + AT_rich Low_complexity Low_complexity 1 44 0 2 983 333 0 0 0 chr4 52171957 52171994 -103458126 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 983 279 0 0 0 chr4 52172258 52172289 -103457831 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 983 725 289 64 5 chr4 52172682 52172975 -103457145 + Lx8 LINE L1 6747 7053 -643 2 983 268 298 36 0 chr4 52173021 52173105 -103457015 + Lx8 LINE L1 7155 7241 -232 2 983 29 28 0 0 chr4 52173250 52173286 -103456834 + AT_rich Low_complexity Low_complexity 1 36 0 2 983 4446 14 0 0 chr4 52173361 52173854 -103456266 + MT2_Mm LTR ERVL 1 493 0 2 983 2576 45 6 6 chr4 52174472 52174805 -103455315 + L1Md_F3 LINE L1 6246 6578 -6 2 983 249 33 0 0 chr4 52174830 52174860 -103455260 + (A)n Simple_repeat Simple_repeat 1 30 0 2 983 1279 298 53 56 chr4 52176034 52176308 -103453812 + Lx7 LINE L1 6654 6924 -772 2 983 261 0 0 0 chr4 52176308 52176337 -103453783 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 983 1009 102 7 0 chr4 52176337 52176474 -103453646 - B1_Mus1 SINE Alu -9 139 2 2 983 1279 298 53 56 chr4 52176474 52176878 -103453242 + Lx7 LINE L1 6925 7330 -366 2 983 23 0 0 0 chr4 52177064 52177087 -103453033 + AT_rich Low_complexity Low_complexity 1 23 0 2 983 655 193 8 0 chr4 52177242 52177361 -103452759 + MTC LTR MaLR 1 120 -301 2 983 3148 183 40 8 chr4 52177392 52177986 -103452134 - Lx5 LINE L1 -3 7047 6435 2 983 1033 181 5 38 chr4 52178248 52178530 -103451590 + L1_Mur2 LINE L1 899 1238 -6474 2 983 576 247 24 12 chr4 52178530 52178701 -103451419 + MTC LTR MaLR 45 219 -202 2 983 3281 59 2 50 chr4 52178701 52179183 -103450937 - Lx LINE L1 -609 6045 5587 2 983 3400 132 33 4 chr4 52179215 52179637 -103450483 + Lx LINE L1 6096 6518 -136 2 983 189 0 0 0 chr4 52179637 52179658 -103450462 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 2 983 3400 132 33 4 chr4 52179658 52179775 -103450345 + Lx LINE L1 6519 6650 -4 2 983 1127 239 0 0 chr4 52179900 52180126 -103449994 + MTC LTR MaLR 196 421 0 2 983 557 337 100 31 chr4 52180932 52181413 -103448707 + L1MD LINE L1 2327 2840 -3306 2 983 4930 246 59 15 chr4 52181438 52182768 -103447352 - Lx6 LINE L1 -2 7458 6070 2 983 3516 202 58 28 chr4 52182753 52183749 -103446371 - L1_Mur3 LINE L1 -4488 1392 371 2 983 518 54 14 0 chr4 52184665 52184739 -103445381 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 983 227 347 28 0 chr4 52184745 52184817 -103445303 - MLT1E1 LTR MaLR -105 549 476 2 983 601 330 14 34 chr4 52185891 52186098 -103444022 - ID_B1 SINE B4 -19 205 3 2 983 387 0 0 0 chr4 52186108 52186151 -103443969 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 983 4541 249 84 18 chr4 52186445 52188041 -103442079 + Lx7 LINE L1 5627 7318 -142 2 983 182 91 30 0 chr4 52188041 52188074 -103442046 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 983 3417 284 97 45 chr4 52188074 52188205 -103441915 + Lx7 LINE L1 7319 7444 -16 2 983 654 321 22 0 chr4 52188657 52188841 -103441279 + ID_B1 SINE B4 4 191 -33 2 983 50 42 0 0 chr4 52189531 52189602 -103440518 + AT_rich Low_complexity Low_complexity 1 71 0 2 983 1308 64 0 0 chr4 52190455 52190626 -103439494 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 2 983 3855 102 0 22 chr4 52191681 52192279 -103437841 - L1_Mm LINE L1 -816 5067 4483 2 983 13880 91 19 8 chr4 52192703 52195893 -103434227 + Lx3_Mus LINE L1 3769 6993 -16 2 983 183 239 22 0 chr4 52195968 52196014 -103434106 + L3b LINE CR1 332 378 -104 2 983 401 0 20 0 chr4 52196120 52196169 -103433951 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 983 342 0 0 0 chr4 52196199 52196237 -103433883 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 983 260 271 0 0 chr4 52197453 52197523 -103432597 - ID2 SINE ID -13 70 1 2 983 25 0 0 0 chr4 52198410 52198435 -103431685 + AT_rich Low_complexity Low_complexity 1 25 0 2 983 21 104 0 0 chr4 52198640 52198717 -103431403 + AT_rich Low_complexity Low_complexity 1 77 0 2 983 5698 5 0 2 chr4 52199037 52199673 -103430447 + L1Md_A LINE L1 5948 6582 0 2 983 1996 87 18 96 chr4 52199870 52200213 -103429907 - IAPLTR2a LTR ERVK -11 316 1 2 983 6691 35 2 20 chr4 52200215 52201080 -103429040 - IAPEz-int LTR ERVK -2 6479 5630 2 983 12398 55 79 22 chr4 52201066 52203974 -103426146 - IAPEz-int LTR ERVK -3405 3076 3 2 983 2222 88 165 3 chr4 52203974 52204326 -103425794 - IAPLTR2a LTR ERVK -2 409 1 2 983 34 24 0 0 chr4 52204390 52204431 -103425689 + AT_rich Low_complexity Low_complexity 1 41 0 2 983 577 303 8 19 chr4 52204509 52204765 -103425355 - Lx9 LINE L1 -162 7482 7230 2 983 1517 259 49 58 chr4 52204987 52205278 -103424842 + Lx9 LINE L1 6581 6865 -779 2 983 1526 142 60 11 chr4 52205278 52205562 -103424558 - Lx LINE L1 -1 6653 6356 2 983 1517 259 49 58 chr4 52205562 52205803 -103424317 + Lx9 LINE L1 6866 7109 -535 2 983 6323 58 1 2 chr4 52205803 52206603 -103423517 + L1Md_F2 LINE L1 5784 6582 0 2 983 1517 206 38 85 chr4 52206603 52206815 -103423305 + Lx9 LINE L1 7012 7213 -431 2 983 576 0 25 25 chr4 52206905 52206986 -103423134 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2 983 299 277 36 0 chr4 52207126 52207209 -103422911 + ORR1D1 LTR MaLR 276 361 -13 2 983 5806 104 24 3 chr4 52207587 52208459 -103421661 - Lx3A LINE L1 0 6981 6092 2 983 257 307 33 85 chr4 52209427 52209580 -103420540 + L2b LINE L2 3226 3370 -5 2 983 2136 211 101 38 chr4 52209662 52210214 -103419906 - RMER19B LTR ERVK 0 902 316 2 983 626 265 0 86 chr4 52211426 52211624 -103418496 + B3A SINE B2 2 182 -16 2 983 256 83 0 40 chr4 52211628 52211678 -103418442 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2 983 278 317 76 52 chr4 52211947 52212157 -103417963 - L1MA9 LINE L1 -190 6122 5908 2 983 45 34 0 0 chr4 52212168 52212227 -103417893 + AT_rich Low_complexity Low_complexity 1 59 0 2 983 384 290 46 0 chr4 52212231 52212362 -103417758 + L1MD LINE L1 2788 2924 -3222 2 983 23 33 0 0 chr4 52213314 52213344 -103416776 + AT_rich Low_complexity Low_complexity 1 30 0 2 983 305 296 152 16 chr4 52213410 52213667 -103416453 + L1MD LINE L1 4172 4463 -1683 2 983 237 217 42 28 chr4 52213724 52213795 -103416325 + L1M5 LINE L1 4592 4663 -1483 2 983 6341 34 1 4 chr4 52215669 52216427 -103413693 - L1Md_T LINE L1 -3 6579 5824 2 983 1068 15 0 43 chr4 52216427 52216567 -103413553 + B1_Mm SINE Alu 14 147 0 2 983 583 284 113 64 chr4 52216709 52217144 -103412976 - MLT2B4 LTR ERVL -19 445 15 2 983 343 280 71 8 chr4 52218062 52218188 -103411932 + MER90 LTR ERV1 22 155 -420 2 983 216 111 0 0 chr4 52218715 52218751 -103411369 + (T)n Simple_repeat Simple_repeat 1 36 0 2 983 3786 108 60 7 chr4 52218769 52219340 -103410780 - Lx2 LINE L1 -1 6996 6396 2 983 825 332 123 5 chr4 52219468 52219841 -103410279 - MTE-int LTR MaLR -1036 544 128 2 983 279 333 0 12 chr4 52219842 52219924 -103410196 - ORR1E LTR MaLR -278 81 1 2 983 836 124 0 7 chr4 52220029 52220167 -103409953 + (GAA)n Simple_repeat Simple_repeat 1 137 0 2 983 22 35 0 0 chr4 52220271 52220300 -103409820 + AT_rich Low_complexity Low_complexity 1 29 0 2 983 23 54 0 0 chr4 52221374 52221411 -103408709 + AT_rich Low_complexity Low_complexity 1 37 0 2 983 272 152 61 0 chr4 52221567 52221633 -103408487 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 2 983 394 320 40 7 chr4 52221657 52221805 -103408315 + MIRb SINE MIR 60 212 -56 2 983 3382 122 42 181 chr4 52221877 52222710 -103407410 + RMER6A LTR ERVK 40 756 0 2 983 1028 307 21 5 chr4 52222834 52223214 -103406906 - L1ME1 LINE L1 -9 6170 5785 2 983 314 342 87 82 chr4 52223506 52223862 -103406258 + L2c LINE L2 3029 3386 -1 2 983 1111 81 0 48 chr4 52224820 52224988 -103405132 + L1_Mus1 LINE L1 6408 6567 0 2 983 227 132 52 13 chr4 52225080 52225157 -103404963 + T-rich Low_complexity Low_complexity 2 81 0 2 983 189 74 0 0 chr4 52225175 52225202 -103404918 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2 983 1081 95 0 7 chr4 52225224 52225372 -103404748 - B1_Mus2 SINE Alu 0 147 1 2 983 1516 312 39 28 chr4 52227340 52227909 -103402211 - Lx6 LINE L1 -27 7433 6479 2 983 785 243 98 0 chr4 52227945 52228159 -103401961 - Lx6 LINE L1 -1187 6273 6039 2 983 4429 196 30 38 chr4 52228160 52229223 -103400897 + Lx5 LINE L1 4380 5434 -443 2 983 563 321 63 40 chr4 52229389 52229688 -103400432 - RLTR12B LTR ERVK -222 306 1 2 983 2004 181 47 33 chr4 52229688 52230264 -103399856 + Lx5 LINE L1 5413 6014 -1036 2 983 1306 205 7 44 chr4 52230402 52230673 -103399447 + Lx9 LINE L1 6329 6589 -1055 2 983 288 310 57 79 chr4 52230892 52231032 -103399088 + RMER10B LTR ERVL 258 394 -4 2 983 2536 240 70 66 chr4 52231032 52231441 -103398679 + Lx9 LINE L1 6598 7005 -639 2 983 521 30 15 0 chr4 52231441 52231508 -103398612 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 983 2536 240 70 66 chr4 52231508 52231557 -103398563 + Lx9 LINE L1 7006 7052 -592 2 983 1008 83 7 46 chr4 52231557 52231708 -103398412 + B1_Mus1 SINE Alu 2 146 -2 2 983 2536 224 112 49 chr4 52231708 52232251 -103397869 + Lx9 LINE L1 7053 7636 -8 2 983 815 264 127 35 chr4 52232547 52232908 -103397212 - MTD LTR MaLR -13 383 1 2 983 268 24 49 0 chr4 52233952 52233993 -103396127 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 983 435 113 0 0 chr4 52234835 52234906 -103395214 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 983 401 0 20 0 chr4 52234906 52234954 -103395166 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 2 983 688 248 89 20 chr4 52235685 52235887 -103394233 + B3 SINE B2 1 216 0 3 983 780 306 24 44 chr4 52235927 52236221 -103393899 + B4A SINE B4 5 292 0 3 983 8216 36 3 0 chr4 52236443 52237873 -103392247 - L1Md_F3 LINE L1 -14 6570 5136 3 983 784 247 0 66 chr4 52238036 52238248 -103391872 + B3A SINE B2 1 198 0 3 983 724 368 81 72 chr4 52239520 52240287 -103389833 + Arthur1 DNA Tip100 20 793 -3154 3 983 358 230 129 22 chr4 52240307 52240485 -103389635 + Arthur1 DNA Tip100 3455 3651 -296 3 983 504 32 0 0 chr4 52240974 52241036 -103389084 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 983 861 240 66 0 chr4 52241079 52241275 -103388845 - B3 SINE B2 -7 209 1 3 983 37760 40 4 3 chr4 52241476 52247704 -103382416 - L1Md_T LINE L1 0 6585 253 3 983 578 298 21 7 chr4 52248199 52248341 -103381779 - B4 SINE B4 -82 210 67 3 983 5858 223 74 7 chr4 52248345 52250880 -103379240 + Lx6 LINE L1 4734 7452 -8 3 983 1472 277 57 7 chr4 52252275 52252740 -103377380 + Lx6 LINE L1 6455 7318 -142 3 983 342 0 0 0 chr4 52254442 52254480 -103375640 + (TAA)n Simple_repeat Simple_repeat 2 39 0 3 983 495 0 0 0 chr4 52255131 52255186 -103374934 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 983 412 163 116 18 chr4 52255310 52255419 -103374701 + Lx3C LINE L1 1912 2024 -3862 3 983 17306 80 92 11 chr4 52255421 52259650 -103370470 + L1Md_A LINE L1 440 5581 -299 3 983 8461 32 0 0 chr4 52259650 52260646 -103369474 + L1Md_A LINE L1 5587 6582 0 3 983 13787 159 161 30 chr4 52260649 52260686 -103369434 + Lx3C LINE L1 2011 2048 -3829 3 983 324 0 0 0 chr4 52260686 52260722 -103369398 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 983 303 28 0 0 chr4 52260722 52260757 -103369363 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 983 13787 159 161 30 chr4 52260757 52261156 -103368964 + Lx3C LINE L1 2049 2454 -3423 3 983 225 0 0 0 chr4 52261156 52261181 -103368939 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 983 13787 159 161 30 chr4 52261181 52261345 -103368775 + Lx3C LINE L1 2455 2614 -3263 3 983 459 0 0 0 chr4 52261345 52261396 -103368724 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 983 234 0 0 0 chr4 52261396 52261421 -103368699 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 983 13787 159 161 30 chr4 52261421 52262767 -103367353 + Lx3C LINE L1 2615 4430 -1447 3 983 5569 72 16 3 chr4 52262767 52263505 -103366615 + L1_Mus1 LINE L1 5818 6565 -2 3 983 13787 159 161 30 chr4 52263505 52263723 -103366397 + Lx3C LINE L1 4431 4623 -1254 3 983 244 0 56 0 chr4 52263723 52263759 -103366361 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 983 13787 159 161 30 chr4 52263759 52264779 -103365341 + Lx3C LINE L1 4624 5616 -261 3 983 1273 133 0 94 chr4 52264768 52265034 -103365086 + L1_Mur2 LINE L1 4782 5022 -855 3 983 2593 237 163 10 chr4 52265036 52265851 -103364269 + Lx3C LINE L1 5616 6555 -421 3 983 540 0 0 0 chr4 52266216 52266276 -103363844 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 983 3010 20 6 0 chr4 52266611 52266955 -103363165 - ORR1A0 LTR MaLR 0 346 1 3 983 672 264 21 14 chr4 52267081 52267223 -103362897 - B1F1 SINE Alu 0 149 7 3 983 317 299 41 145 chr4 52267223 52267249 -103362871 - B4A SINE B4 -62 226 77 3 983 695 44 0 32 chr4 52267241 52267253 -103362867 - B1_Mus2 SINE Alu -1 146 137 3 983 210 37 0 0 chr4 52267253 52267280 -103362840 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 3 983 695 44 0 32 chr4 52267280 52267361 -103362759 - B1_Mus2 SINE Alu -11 136 56 3 983 230 182 140 35 chr4 52267312 52267369 -103362751 - RLTR25B LTR ERVK -519 509 447 3 983 192 111 0 0 chr4 52267395 52267431 -103362689 + (T)n Simple_repeat Simple_repeat 1 36 0 3 983 321 47 0 0 chr4 52267434 52267477 -103362643 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 3 983 23 0 0 0 chr4 52268574 52268597 -103361523 + AT_rich Low_complexity Low_complexity 1 23 0 3 983 249 346 101 13 chr4 52269449 52269607 -103360513 + MamRep434 DNA TcMar 38 209 -217 3 983 21 89 0 0 chr4 52270287 52270343 -103359777 + AT_rich Low_complexity Low_complexity 1 56 0 3 983 501 305 45 15 chr4 52270427 52270627 -103359493 - L1MC1 LINE L1 -23 6310 6105 3 983 3722 9 0 0 chr4 52270839 52271258 -103358862 - L1Md_A LINE L1 0 6582 6164 3 983 22 0 0 0 chr4 52271386 52271408 -103358712 + AT_rich Low_complexity Low_complexity 1 22 0 3 983 330 282 14 0 chr4 52271655 52271726 -103358394 - B4A SINE B4 -14 278 207 3 983 226 246 0 0 chr4 52271728 52271785 -103358335 + T-rich Low_complexity Low_complexity 1 57 0 3 983 4402 159 122 78 chr4 52271797 52272804 -103357316 - Lx3B LINE L1 -3 6970 5914 3 983 225 0 48 48 chr4 52272804 52272846 -103357274 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 983 4402 159 122 78 chr4 52272846 52272896 -103357224 - Lx3B LINE L1 -1060 5913 5866 3 983 582 359 6 0 chr4 52272896 52273066 -103357054 - B4A SINE B4 -74 218 48 3 983 208 163 0 23 chr4 52273623 52273667 -103356453 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 3 983 26 0 0 0 chr4 52273814 52273840 -103356280 + AT_rich Low_complexity Low_complexity 1 26 0 3 983 958 270 173 42 chr4 52274237 52274596 -103355524 - MTD LTR MaLR -13 406 1 3 983 296 298 81 24 chr4 52275193 52275317 -103354803 - LTR40b LTR ERVL -331 131 1 3 983 404 296 42 14 chr4 52275605 52275749 -103354371 - LTR80B LTR ERVL -351 233 86 3 983 202 381 10 0 chr4 52275771 52275868 -103354252 + MIR SINE MIR 101 198 -64 3 983 39 38 0 0 chr4 52277088 52277141 -103352979 + AT_rich Low_complexity Low_complexity 1 53 0 3 983 1250 173 165 28 chr4 52277148 52277469 -103352651 + Lx9 LINE L1 7261 7625 -19 3 983 23 33 0 0 chr4 52279995 52280025 -103350095 + AT_rich Low_complexity Low_complexity 1 30 0 3 983 191 88 29 0 chr4 52280046 52280080 -103350040 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3 983 561 311 61 17 chr4 52280096 52280276 -103349844 + B3A SINE B2 11 198 0 3 983 230 289 169 38 chr4 52280438 52280704 -103349416 - Lx9 LINE L1 -21 7623 7323 3 983 4461 163 19 19 chr4 52280841 52281668 -103348452 + Lx4B LINE L1 6225 7051 -7 3 983 606 280 31 76 chr4 52281799 52282023 -103348097 + B3 SINE B2 3 216 0 3 983 422 307 136 23 chr4 52282067 52282641 -103347479 - L1M2 LINE L1 -923 5220 4582 3 983 743 308 110 15 chr4 52282643 52282970 -103347150 + MTEb LTR MaLR 10 367 -12 3 983 278 297 28 28 chr4 52282975 52283117 -103347003 - L1_Mur3 LINE L1 -1336 4547 4406 3 983 3505 27 0 11 chr4 52283117 52283562 -103346558 + L1Md_F2 LINE L1 5147 5586 -297 3 983 8171 34 7 2 chr4 52283562 52284541 -103345579 + L1Md_F2 LINE L1 5587 6570 -12 3 983 315 0 0 0 chr4 52284600 52284635 -103345485 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 983 815 260 0 59 chr4 52284677 52284898 -103345222 - B3 SINE B2 -2 214 7 3 983 539 302 121 28 chr4 52284937 52285366 -103344754 - L1_Mur3 LINE L1 -1605 4275 3807 3 983 205 98 0 47 chr4 52285783 52285826 -103344294 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 983 2352 192 30 16 chr4 52287271 52287746 -103342374 + RLTR16 LTR ERVK 13 555 -13 3 983 19172 164 31 7 chr4 52287746 52288629 -103341491 + Lx2 LINE L1 1967 2886 -2991 3 983 774 0 0 0 chr4 52288629 52288715 -103341405 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 3 983 19172 165 25 13 chr4 52288715 52292341 -103337779 + Lx2 LINE L1 2887 6549 -17 3 983 4612 150 5 9 chr4 52292341 52293095 -103337025 + Lx2 LINE L1 6246 6996 -1 3 983 392 358 31 12 chr4 52293221 52293382 -103336738 + MER5A1 DNA MER1_type 2 165 -1 3 983 231 352 76 21 chr4 52293580 52293725 -103336395 + L3 LINE CR1 4321 4473 -16 3 983 260 211 14 0 chr4 52295089 52295160 -103334960 + GA-rich Low_complexity Low_complexity 1 72 0 3 983 444 37 0 0 chr4 52295239 52295293 -103334827 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 3 983 342 0 0 0 chr4 52296263 52296301 -103333819 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 983 1120 71 0 0 chr4 52296304 52296444 -103333676 - B1_Mus1 SINE Alu -7 141 2 3 983 1267 102 11 0 chr4 52296444 52296620 -103333500 - B2_Mm1a SINE B2 -15 178 1 3 984 318 271 8 30 chr4 52298903 52299036 -103331084 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 984 902 289 57 39 chr4 52299093 52299460 -103330660 - MLT2B4 LTR ERVL -65 399 64 3 984 233 279 38 0 chr4 52299468 52299547 -103330573 + L1MA6 LINE L1 6046 6127 -173 3 984 590 268 89 5 chr4 52299580 52299771 -103330349 + B3 SINE B2 1 207 -9 3 984 26 0 0 0 chr4 52299771 52299797 -103330323 + AT_rich Low_complexity Low_complexity 1 26 0 3 984 36196 41 1 3 chr4 52299925 52306188 -103323932 - L1Md_T LINE L1 0 6585 242 3 984 1091 275 49 23 chr4 52306523 52306869 -103323251 + ORR1E LTR MaLR 1 355 -4 3 984 256 302 49 85 chr4 52307589 52307627 -103322493 + YREP_Mm Unknown Unknown 151 232 -1580 3 984 588 246 16 8 chr4 52307627 52307754 -103322366 - ID_B1 SINE B4 -7 217 90 3 984 256 302 49 85 chr4 52307754 52307813 -103322307 + YREP_Mm Unknown Unknown 233 366 -1446 3 984 2783 36 0 3 chr4 52307928 52308264 -103321856 + L1_Mus1 LINE L1 6233 6567 0 3 984 4724 162 20 28 chr4 52308344 52309158 -103320962 - RMER13A LTR ERVK -53 807 1 3 984 24 32 0 0 chr4 52309172 52309203 -103320917 + AT_rich Low_complexity Low_complexity 1 31 0 3 984 229 303 53 0 chr4 52309385 52309461 -103320659 + B4A SINE B4 2 81 -211 3 984 1131 235 152 15 chr4 52309929 52310206 -103319914 + ORR1D1 LTR MaLR 1 324 -50 3 984 2489 171 41 18 chr4 52310206 52310718 -103319402 - RLTR11A2 LTR ERVK -3 524 1 3 984 1131 235 152 15 chr4 52310718 52310769 -103319351 + ORR1D1 LTR MaLR 325 374 0 3 984 234 156 0 0 chr4 52312632 52312677 -103317443 + CT-rich Low_complexity Low_complexity 2 46 0 3 984 567 112 0 0 chr4 52312681 52312779 -103317341 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 984 3176 154 179 17 chr4 52312998 52313681 -103316439 - RMER6A LTR ERVK 0 756 1 3 984 463 292 78 17 chr4 52313681 52313794 -103316326 - B4A SINE B4 -170 122 3 3 984 817 336 7 55 chr4 52313844 52314134 -103315986 + B4A SINE B4 13 288 -4 3 984 569 192 6 47 chr4 52315309 52315478 -103314642 - Lx9 LINE L1 -6 7638 7477 3 984 326 26 0 0 chr4 52315479 52315517 -103314603 - HAL1-3A_ME LINE L1 -848 2010 1973 3 984 674 293 19 0 chr4 52315553 52315758 -103314362 - Lx9 LINE L1 -201 7443 7235 3 984 2020 149 90 49 chr4 52315761 52316149 -103313971 + RMER19C LTR ERVK 208 611 0 3 984 885 211 11 0 chr4 52316152 52316337 -103313783 - Lx9 LINE L1 -418 7226 7040 3 984 258 156 0 0 chr4 52316496 52316541 -103313579 + CT-rich Low_complexity Low_complexity 2 46 0 3 984 1060 285 105 22 chr4 52316579 52317074 -103313046 - Lx8 LINE L1 -365 7108 6573 3 984 195 313 198 9 chr4 52317602 52317718 -103312402 + MIRb SINE MIR 59 196 -72 4 984 648 147 17 17 chr4 52318068 52318186 -103311934 + URR1A DNA MER1_type 70 187 -39 4 984 347 143 55 41 chr4 52318834 52318907 -103311213 - RMER1C Other Other -140 1202 1129 4 984 461 228 0 28 chr4 52318906 52319032 -103311088 + RMER1C Other Other 1224 1333 -9 4 984 189 0 0 0 chr4 52319056 52319077 -103311043 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 984 210 105 0 0 chr4 52319668 52319706 -103310414 + (A)n Simple_repeat Simple_repeat 1 38 0 4 984 418 249 170 60 chr4 52319848 52320066 -103310054 + MER2 DNA MER2_type 101 342 -3 4 984 210 45 68 0 chr4 52320073 52320117 -103310003 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 4 984 247 389 26 45 chr4 52320750 52320906 -103309214 + MIRb SINE MIR 33 185 -83 4 984 3080 45 0 0 chr4 52321188 52321562 -103308558 - L1_Mus1 LINE L1 0 6567 6194 4 984 1193 101 0 6 chr4 52322532 52322712 -103307408 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 984 22 35 0 0 chr4 52322724 52322753 -103307367 + AT_rich Low_complexity Low_complexity 1 29 0 4 984 953 75 0 0 chr4 52322753 52322887 -103307233 + L1_Mus2 LINE L1 6433 6566 0 4 984 1189 149 10 0 chr4 52322897 52323098 -103307022 + Lx4A LINE L1 6814 7016 -42 4 984 818 252 73 0 chr4 52324215 52324490 -103305630 + Lx7 LINE L1 5530 5870 -1826 4 984 198 91 91 0 chr4 52324907 52324966 -103305154 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 984 600 14 0 0 chr4 52324966 52325035 -103305085 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 984 198 91 91 0 chr4 52325035 52325041 -103305079 + (TA)n Simple_repeat Simple_repeat 1 6 0 4 984 603 166 80 40 chr4 52325781 52325957 -103304163 + Lx5 LINE L1 6854 7036 -14 4 984 369 0 0 0 chr4 52325960 52326001 -103304119 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 984 22 103 0 0 chr4 52327527 52327605 -103302515 + AT_rich Low_complexity Low_complexity 1 78 0 4 984 299 299 0 54 chr4 52327892 52327984 -103302136 + MLT1F2 LTR MaLR 459 545 -15 4 984 663 97 0 0 chr4 52328155 52328248 -103301872 - MTC LTR MaLR 0 421 329 4 984 398 144 397 63 chr4 52328247 52328373 -103301747 - MTC LTR MaLR -253 168 1 4 984 321 286 90 11 chr4 52328585 52328762 -103301358 + L1MA4 LINE L1 5730 5920 -380 4 984 507 45 0 0 chr4 52328777 52328843 -103301277 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 4 984 603 62 0 0 chr4 52328972 52329052 -103301068 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 984 598 295 10 38 chr4 52329208 52329379 -103300741 + ID_B1 SINE B4 75 232 -60 4 984 239 93 23 0 chr4 52329400 52329443 -103300677 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 984 785 268 92 106 chr4 52329444 52329899 -103300221 + RMER4A LTR ERVK 9 457 -9 4 984 26 30 0 0 chr4 52329916 52329949 -103300171 + AT_rich Low_complexity Low_complexity 1 33 0 4 984 1410 283 56 78 chr4 52330151 52330701 -103299419 - Lx8 LINE L1 -213 7260 6724 4 984 1373 220 17 81 chr4 52330701 52330893 -103299227 + ORR1C2 LTR MaLR 1 178 -206 4 984 459 0 0 0 chr4 52330893 52330944 -103299176 + (TTC)n Simple_repeat Simple_repeat 3 53 0 4 984 1373 220 17 81 chr4 52330944 52331161 -103298959 + ORR1C2 LTR MaLR 179 384 0 4 984 1410 283 56 78 chr4 52331161 52331250 -103298870 - Lx8 LINE L1 -750 6723 6635 4 984 303 122 0 0 chr4 52331258 52331307 -103298813 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 984 21 0 0 0 chr4 52331321 52331342 -103298778 + AT_rich Low_complexity Low_complexity 1 21 0 4 984 702 213 6 91 chr4 52331482 52331647 -103298473 + RSINE1 SINE B4 15 165 0 4 984 540 0 0 0 chr4 52331672 52331732 -103298388 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 4 984 202 135 27 0 chr4 52331852 52331889 -103298231 + T-rich Low_complexity Low_complexity 3 40 0 4 984 246 373 40 0 chr4 52332822 52332948 -103297172 + L2c LINE L2 3032 3162 -225 4 984 1934 229 79 88 chr4 52333475 52334198 -103295922 - RMER6D LTR ERVK -4 716 1 4 984 366 330 0 0 chr4 52334198 52334277 -103295843 - 5S rRNA rRNA -42 79 1 4 984 7587 28 1 6 chr4 52334834 52335738 -103294382 + L1Md_F3 LINE L1 5675 6574 -10 4 984 3034 130 22 10 chr4 52337762 52338252 -103291868 - Lx2B LINE L1 -2 6998 6503 4 984 21 0 0 0 chr4 52338307 52338328 -103291792 + AT_rich Low_complexity Low_complexity 1 21 0 4 984 360 363 63 21 chr4 52338488 52338727 -103291393 + Charlie6 DNA MER1_type 77 325 -3175 4 984 790 338 40 45 chr4 52338826 52339204 -103290916 + MTE-int LTR MaLR 27 402 -1178 4 984 405 0 0 0 chr4 52339486 52339531 -103290589 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 984 2060 169 70 11 chr4 52339594 52339966 -103290154 - ORR1B1 LTR MaLR 0 394 1 4 984 982 317 128 65 chr4 52341362 52342191 -103287929 + Charlie6 DNA MER1_type 316 1196 -2304 4 984 606 261 99 11 chr4 52342215 52342397 -103287723 - MTD LTR MaLR -57 362 165 4 984 753 325 85 97 chr4 52342398 52342563 -103287557 + Charlie6 DNA MER1_type 1182 1349 -2151 4 984 1635 214 106 50 chr4 52342563 52343100 -103287020 + RMER2 LTR ERV1 1 567 0 4 984 753 325 85 97 chr4 52343100 52343180 -103286940 + Charlie6 DNA MER1_type 1350 1444 -2056 4 984 1163 107 6 0 chr4 52343180 52343358 -103286762 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 984 753 325 85 97 chr4 52343358 52343771 -103286349 + Charlie6 DNA MER1_type 1445 1833 -1667 4 984 23 33 0 0 chr4 52343938 52343968 -103286152 + AT_rich Low_complexity Low_complexity 1 30 0 4 984 185 319 92 53 chr4 52344917 52344993 -103285127 - MIRm SINE MIR -123 153 75 4 984 404 324 36 22 chr4 52345579 52345718 -103284402 - ID_B1 SINE B4 -8 216 76 4 984 452 283 66 0 chr4 52346634 52346740 -103283380 - RSINE1 SINE B4 -52 113 1 4 984 605 271 177 58 chr4 52346740 52346811 -103283309 - MLT1D LTR MaLR -101 404 321 4 984 730 284 94 24 chr4 52346811 52347140 -103282980 + ORR1E LTR MaLR 4 355 -4 4 984 605 271 177 58 chr4 52347140 52347356 -103282764 - MLT1D LTR MaLR -185 320 82 4 984 2917 110 29 13 chr4 52347377 52347827 -103282293 - Lx LINE L1 0 6654 6198 4 984 3518 162 11 0 chr4 52347827 52348452 -103281668 + L1_Mm LINE L1 5160 5791 -92 4 984 492 18 0 0 chr4 52348948 52349005 -103281115 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 984 1788 192 3 30 chr4 52350949 52351285 -103278835 - Lx LINE L1 -8 6646 6316 4 984 4320 132 58 30 chr4 52351285 52352072 -103278048 + RMER17D2 LTR ERVK 1 809 0 4 984 1788 192 3 30 chr4 52352072 52352106 -103278014 - Lx LINE L1 -339 6315 6286 4 984 6404 84 18 1 chr4 52352106 52353069 -103277051 + L1_Mm LINE L1 3102 4080 -1803 4 984 185 143 48 0 chr4 52353128 52353170 -103276950 + T-rich Low_complexity Low_complexity 2 45 0 4 984 272 212 2 0 chr4 52355293 52355354 -103274766 - B1F SINE Alu -2 147 86 4 984 1179 68 0 0 chr4 52355663 52355811 -103274309 + B1_Mus1 SINE Alu 1 148 0 4 984 237 65 0 0 chr4 52355817 52355848 -103274272 + (GGA)n Simple_repeat Simple_repeat 3 33 0 4 984 258 143 0 0 chr4 52355943 52355992 -103274128 + (ATTG)n Simple_repeat Simple_repeat 2 50 0 4 984 304 343 49 20 chr4 52356256 52356409 -103273711 - MIRc SINE MIR -118 158 2 4 984 1171 68 0 0 chr4 52357029 52357177 -103272943 + B1_Mus1 SINE Alu 1 148 0 4 984 2044 204 80 15 chr4 52357349 52357813 -103272307 + RMER20A LTR ERVK 15 508 -8 4 984 501 17 0 0 chr4 52358218 52358276 -103271844 + (TAA)n Simple_repeat Simple_repeat 2 59 0 4 984 1517 238 98 14 chr4 52358728 52359094 -103271026 - MTD LTR MaLR 0 419 23 4 984 21 0 0 0 chr4 52362475 52362496 -103267624 + AT_rich Low_complexity Low_complexity 1 21 0 4 984 385 221 9 17 chr4 52362692 52362807 -103267313 - Lx7 LINE L1 -5 7691 7578 4 984 324 143 0 0 chr4 52362807 52362863 -103267257 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 984 279 0 0 0 chr4 52362879 52362910 -103267210 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 984 1632 181 63 114 chr4 52362912 52362984 -103267136 - Lx7 LINE L1 -178 7518 7434 4 984 405 0 0 0 chr4 52362984 52363029 -103267091 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 984 1632 181 63 114 chr4 52363029 52363449 -103266671 - Lx7 LINE L1 -263 7433 7052 4 984 256 341 55 16 chr4 52363636 52363764 -103266356 - MER5A DNA MER1_type -51 138 6 4 984 304 336 108 78 chr4 52363785 52364043 -103266077 + MER20B DNA MER1_type 220 485 -298 4 984 251 360 190 13 chr4 52364428 52364666 -103265454 + B4 SINE B4 12 292 0 4 984 3435 63 7 5 chr4 52364869 52365317 -103264803 + L1_Mus3 LINE L1 6189 6637 -1 4 984 501 17 0 0 chr4 52366367 52366425 -103263695 + (CTTG)n Simple_repeat Simple_repeat 1 58 0 4 984 727 177 0 16 chr4 52366425 52366551 -103263569 - B1_Mur2 SINE Alu -13 136 13 4 984 453 326 28 71 chr4 52366591 52366987 -103263133 + MTEa LTR MaLR 1 379 0 4 984 399 304 34 56 chr4 52367617 52367633 -103262487 + B4A SINE B4 82 133 -159 4 984 802 172 0 0 chr4 52367633 52367761 -103262359 + B1_Mus2 SINE Alu 14 141 -6 4 984 399 304 34 56 chr4 52367761 52367795 -103262325 + B4A SINE B4 134 255 -37 4 984 364 197 45 0 chr4 52368494 52368560 -103261560 - B1_Mur4 SINE Alu -56 94 26 4 984 861 177 7 0 chr4 52368887 52369028 -103261092 + B1_Mur4 SINE Alu 2 143 -7 4 984 523 152 0 41 chr4 52369053 52369176 -103260944 + GA-rich Low_complexity Low_complexity 4 121 0 4 984 1227 247 90 54 chr4 52371048 52371437 -103258683 - MTD LTR MaLR 0 419 17 4 984 2168 228 38 20 chr4 52371572 52372099 -103258021 + MTC LTR MaLR 11 421 0 4 984 32 0 0 0 chr4 52372509 52372541 -103257579 + AT_rich Low_complexity Low_complexity 1 32 0 4 984 448 252 30 0 chr4 52372551 52372650 -103257470 - RSINE1 SINE B4 -62 103 2 4 984 7741 103 46 3 chr4 52375738 52376788 -103253332 - Lx3_Mus LINE L1 0 7009 5914 4 984 318 80 0 0 chr4 52376788 52376838 -103253282 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 4 984 7741 103 46 3 chr4 52376838 52376957 -103253163 - Lx3_Mus LINE L1 -1096 5913 5790 4 984 299 357 0 0 chr4 52377221 52377319 -103252801 + MamRep38 DNA hAT 197 294 -1 4 984 201 286 57 0 chr4 52378005 52378075 -103252045 + MIRb SINE MIR 187 260 -8 4 984 905 320 12 12 chr4 52379684 52379937 -103250183 - B4A SINE B4 -36 256 4 4 984 2124 153 43 69 chr4 52380648 52380783 -103249337 - MTC LTR MaLR 0 421 299 4 984 1122 69 21 0 chr4 52380783 52380927 -103249193 + B1_Mm SINE Alu 1 147 0 5 984 2124 153 43 69 chr4 52380927 52381213 -103248907 - MTC LTR MaLR -123 298 11 4 984 1089 103 0 0 chr4 52381261 52381406 -103248714 - B1_Mus1 SINE Alu -3 145 1 5 984 456 310 90 77 chr4 52382661 52382895 -103247225 - MIR SINE MIR -11 251 15 5 984 608 281 37 77 chr4 52383973 52384324 -103245796 - MamRep434 DNA TcMar -27 399 63 5 984 236 219 64 64 chr4 52384890 52384968 -103245152 - Tigger10 DNA Tigger -1498 345 268 5 984 558 0 0 0 chr4 52385660 52385722 -103244398 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 984 243 0 0 0 chr4 52385722 52385749 -103244371 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 984 381 253 0 12 chr4 52385766 52385850 -103244270 - RSINE1 SINE B4 -56 109 27 5 984 850 335 3 70 chr4 52386251 52386550 -103243570 + B4 SINE B4 10 288 -4 5 984 6226 183 102 32 chr4 52387287 52387796 -103242324 + L1_Mur2 LINE L1 813 1380 -4497 5 984 1092 75 14 7 chr4 52387796 52387943 -103242177 + B1_Mus1 SINE Alu 1 148 0 5 984 6226 162 14 68 chr4 52387943 52389246 -103240874 + L1_Mur2 LINE L1 1381 2609 -3268 5 984 8954 98 3 1 chr4 52389237 52390595 -103239525 - L1_Mm LINE L1 -1138 4745 3385 5 984 7194 109 7 7 chr4 52390582 52391047 -103239073 + L1_Mm LINE L1 4742 5213 -670 5 984 2693 134 42 21 chr4 52391047 52391519 -103238601 - RLTR45 LTR ERVK 0 482 1 5 984 7194 109 7 7 chr4 52391519 52392158 -103237962 + L1_Mm LINE L1 5214 5846 -37 5 984 4326 24 0 0 chr4 52392160 52392653 -103237467 - MT2_Mm LTR ERVL 0 493 1 5 984 302 0 0 0 chr4 52392653 52392691 -103237429 - MERVL-int LTR ERVL 0 5485 5448 5 984 363 125 26 53 chr4 52392691 52392767 -103237353 - ORR1A3-int LTR MaLR -1323 640 567 5 984 45631 17 1 0 chr4 52392767 52398132 -103231988 - MERVL-int LTR ERVL -114 5371 1 5 984 4326 24 0 0 chr4 52398132 52398625 -103231495 - MT2_Mm LTR ERVL 0 493 1 5 984 5337 100 26 11 chr4 52398625 52399407 -103230713 + L1_Mus3 LINE L1 5844 6636 -2 5 984 15195 143 45 7 chr4 52399414 52402266 -103227854 + L1_Mur2 LINE L1 2591 5551 -326 5 984 204 120 0 57 chr4 52402270 52402323 -103227797 + GA-rich Low_complexity Low_complexity 6 55 0 5 984 546 267 196 16 chr4 52402412 52402625 -103227495 + MT2A LTR ERVL 310 597 -4 5 984 549 0 0 0 chr4 52403465 52403526 -103226594 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 984 238 143 0 0 chr4 52403590 52403625 -103226495 - RLTRETN_Mm LTR ERVK 0 322 288 5 984 723 310 14 34 chr4 52404997 52405204 -103224916 + ID_B1 SINE B4 2 204 -20 5 984 245 260 31 0 chr4 52405237 52405333 -103224787 + L1MC LINE L1 3673 3771 -2375 5 984 369 231 193 9 chr4 52405557 52405666 -103224454 + RSINE1 SINE B4 6 134 -31 5 984 378 0 0 0 chr4 52405706 52405748 -103224372 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 984 198 103 0 0 chr4 52406030 52406059 -103224061 + (CAGGG)n Simple_repeat Simple_repeat 4 32 0 5 984 292 287 16 102 chr4 52406069 52406197 -103223923 - MTEa LTR MaLR -259 120 4 5 984 335 222 12 36 chr4 52406716 52406800 -103223320 + ID4_ SINE ID 1 82 -1 5 984 402 74 0 0 chr4 52407001 52407055 -103223065 + (TAA)n Simple_repeat Simple_repeat 1 54 0 5 984 21 0 0 0 chr4 52407098 52407119 -103223001 + AT_rich Low_complexity Low_complexity 1 21 0 5 984 229 315 0 0 chr4 52407380 52407434 -103222686 - BC1_Mm scRNA scRNA -82 70 17 5 984 29 47 0 0 chr4 52407608 52407651 -103222469 + AT_rich Low_complexity Low_complexity 1 43 0 5 984 306 113 33 124 chr4 52407670 52407791 -103222329 + Lx9 LINE L1 7458 7567 -77 5 984 29 0 0 0 chr4 52407813 52407842 -103222278 + AT_rich Low_complexity Low_complexity 1 29 0 5 984 284 310 203 7 chr4 52407868 52408011 -103222109 - MLT1H LTR MaLR -29 520 350 5 984 291 56 18 36 chr4 52408030 52408086 -103222034 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 984 1873 226 13 10 chr4 52408108 52408496 -103221624 + MTD LTR MaLR 20 408 -11 5 984 302 387 76 16 chr4 52408518 52408612 -103221508 - MLT1H LTR MaLR -195 354 257 5 984 572 0 15 0 chr4 52408612 52408680 -103221440 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 5 984 302 387 76 16 chr4 52408680 52408769 -103221351 - MLT1H LTR MaLR -293 256 161 5 984 250 336 121 0 chr4 52408742 52408858 -103221262 + MTE2a LTR MaLR 7 136 -243 5 984 401 292 120 79 chr4 52408811 52408952 -103221168 + MT2A LTR ERVL 80 225 -308 5 984 531 45 0 0 chr4 52408952 52409018 -103221102 + (CTG)n Simple_repeat Simple_repeat 1 66 0 5 984 401 292 120 79 chr4 52409018 52409218 -103220902 + MT2A LTR ERVL 226 435 -98 5 984 216 214 0 0 chr4 52409398 52409440 -103220680 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 984 365 291 18 0 chr4 52410156 52410266 -103219854 + B1F1 SINE Alu 2 113 -36 5 984 257 338 54 40 chr4 52410266 52410304 -103219816 + B4A SINE B4 87 236 -56 5 984 194 0 39 0 chr4 52411294 52411320 -103218800 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 984 1122 118 47 0 chr4 52411320 52411489 -103218631 - B2_Mm1t SINE B2 -15 178 2 5 984 344 299 93 11 chr4 52411509 52411636 -103218484 - B4 SINE B4 -91 201 70 5 984 314 61 20 0 chr4 52411636 52411685 -103218435 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 5 984 307 336 280 37 chr4 52411727 52411954 -103218166 - B4A SINE B4 -2 290 9 5 984 363 247 43 0 chr4 52411959 52412052 -103218068 - B4A SINE B4 -195 97 1 5 984 203 32 65 0 chr4 52412178 52412209 -103217911 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 5 984 195 349 55 9 chr4 52412879 52412989 -103217131 - L2 LINE L2 -947 2472 2358 5 984 548 284 10 15 chr4 52413675 52413879 -103216241 - MERVK26-int LTR ERVK -3748 3171 2969 5 984 11808 131 14 1 chr4 52413897 52414689 -103215431 + L1_Mus3 LINE L1 3838 4630 -1253 5 984 387 0 0 0 chr4 52414689 52414732 -103215388 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 5 984 11808 101 16 1 chr4 52414732 52416704 -103213416 + L1_Mus3 LINE L1 4631 6633 -5 5 984 345 75 0 0 chr4 52416748 52416801 -103213319 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 984 551 158 27 20 chr4 52416801 52416950 -103213170 + GA-rich Low_complexity Low_complexity 2 151 0 5 984 602 362 14 6 chr4 52416954 52417315 -103212805 - MERVK26-int LTR ERVK -3957 2962 2599 5 984 377 345 6 0 chr4 52417370 52417541 -103212579 - MERVK26-int LTR ERVK -4410 2509 2338 5 984 2180 28 10 30 chr4 52417551 52417940 -103212180 + L1Md_F3 LINE L1 6273 6584 0 5 984 726 351 68 44 chr4 52417975 52418900 -103211220 - MERVK26-int LTR ERVK -4626 2293 1347 5 984 211 29 59 0 chr4 52419066 52419100 -103211020 + (GAA)n Simple_repeat Simple_repeat 1 36 0 5 984 679 165 6 22 chr4 52419100 52419117 -103211003 + polypurine Low_complexity Low_complexity 2 18 0 5 984 1392 56 0 0 chr4 52419117 52419295 -103210825 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 984 679 165 6 22 chr4 52419295 52419367 -103210753 + polypurine Low_complexity Low_complexity 19 88 0 5 984 1117 103 11 0 chr4 52419367 52419542 -103210578 + (GAA)n Simple_repeat Simple_repeat 3 179 0 5 984 679 165 6 22 chr4 52419542 52419631 -103210489 + polypurine Low_complexity Low_complexity 89 176 0 5 984 740 80 24 16 chr4 52419588 52419715 -103210405 + (GAGAA)n Simple_repeat Simple_repeat 1 128 0 5 984 247 35 0 0 chr4 52419715 52419744 -103210376 + (GGA)n Simple_repeat Simple_repeat 1 29 0 5 984 288 314 29 0 chr4 52419852 52419922 -103210198 - RMER20A LTR ERVK -4 512 441 5 984 581 219 16 39 chr4 52420075 52420203 -103209917 - RMER20B LTR ERVK -502 125 1 5 984 240 35 0 0 chr4 52420304 52420333 -103209787 + (T)n Simple_repeat Simple_repeat 1 29 0 5 984 23987 22 0 0 chr4 52420362 52423985 -103206135 - L1Md_T LINE L1 0 6582 2959 5 984 21 36 0 0 chr4 52424087 52424115 -103206005 + AT_rich Low_complexity Low_complexity 1 28 0 5 984 595 279 93 0 chr4 52424115 52424298 -103205822 - B3 SINE B2 -14 202 3 5 984 392 401 61 20 chr4 52424312 52424380 -103205740 + LTR16A LTR ERVL 145 215 -236 5 984 846 291 83 28 chr4 52424380 52424776 -103205344 + MTD LTR MaLR 2 419 0 5 984 392 401 61 20 chr4 52424776 52425000 -103205120 + LTR16A LTR ERVL 216 449 -2 5 984 303 407 55 55 chr4 52425047 52425302 -103204818 + MLT1G LTR MaLR 5 259 -332 5 984 340 338 19 13 chr4 52425494 52425650 -103204470 + Lx7 LINE L1 6224 6380 -1316 5 984 2216 291 46 30 chr4 52425666 52426463 -103203657 + Lx7 LINE L1 6515 7327 -369 5 984 336 125 0 0 chr4 52426463 52426527 -103203593 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 984 1224 35 0 0 chr4 52426553 52426694 -103203426 + B1_Mm SINE Alu 1 141 -6 5 984 216 204 0 0 chr4 52426695 52426739 -103203381 + A-rich Low_complexity Low_complexity 1 44 0 5 984 187 291 39 86 chr4 52426937 52427065 -103203055 + MIRc SINE MIR 114 235 -33 5 984 2997 152 23 28 chr4 52427504 52428034 -103202086 + RLTR11A2 LTR ERVK 1 527 0 5 984 264 331 8 55 chr4 52428072 52428200 -103201920 + MLT1G LTR MaLR 290 411 0 5 984 366 339 84 50 chr4 52428552 52428791 -103201329 - LTR16A LTR ERVL -100 351 105 5 985 500 382 51 4 chr4 52428954 52429227 -103200893 - B4A SINE B4 -6 286 1 5 985 6785 124 12 12 chr4 52429742 52431233 -103198887 - Lx LINE L1 -1 6653 5160 5 985 2894 116 9 13 chr4 52431233 52431689 -103198431 + Lx LINE L1 6198 6651 -3 5 985 533 225 23 23 chr4 52431696 52431828 -103198292 + MLT1D LTR MaLR 82 213 -292 5 985 2923 38 3 0 chr4 52431979 52432324 -103197796 + ORR1A1 LTR MaLR 1 346 0 5 985 12408 85 7 13 chr4 52432324 52432899 -103197221 + ORR1A1-int LTR MaLR 1 582 -1210 5 985 4645 58 5 19 chr4 52432899 52433494 -103196626 - LTRIS_Mus LTR ERV1 0 587 1 5 985 12408 85 7 13 chr4 52433494 52434721 -103195399 + ORR1A1-int LTR MaLR 583 1792 0 5 985 2492 53 46 0 chr4 52434721 52435044 -103195076 + ORR1A1 LTR MaLR 1 338 -8 5 985 5343 93 25 17 chr4 52435179 52435952 -103194168 - Lx LINE L1 -1 6653 5875 5 985 244 252 152 19 chr4 52436267 52436372 -103193748 + MIR3 SINE MIR 86 204 -4 5 985 625 157 4 0 chr4 52437841 52437955 -103192165 - Lx3C LINE L1 -491 5682 5531 5 985 6498 138 60 22 chr4 52437945 52439209 -103190911 + Lx3C LINE L1 5663 6974 -2 5 985 2709 110 50 2 chr4 52439409 52439828 -103190292 - BGLII_A LTR ERVK 0 445 7 5 985 2862 172 163 22 chr4 52439834 52440665 -103189455 - MYSERV16_I-int LTR ERVK -30 2812 1289 5 985 483 48 0 0 chr4 52440702 52440764 -103189356 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 985 917 294 49 40 chr4 52441379 52441708 -103188412 + MTE2a LTR MaLR 46 377 -2 5 985 563 239 49 38 chr4 52441807 52441982 -103188138 - ID_B1 SINE B4 -29 263 81 5 985 272 172 17 0 chr4 52442272 52442330 -103187790 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 985 933 128 0 0 chr4 52442691 52442839 -103187281 + (TC)n Simple_repeat Simple_repeat 1 148 0 5 985 746 171 16 0 chr4 52442839 52442962 -103187158 - B1_Mur3 SINE Alu -16 133 9 5 985 2607 157 32 100 chr4 52443603 52444171 -103185949 + RLTR24 LTR ERV1 1 529 0 5 985 779 150 7 0 chr4 52444872 52445012 -103185108 + GA-rich Low_complexity Low_complexity 3 143 0 5 985 729 88 0 0 chr4 52445021 52445123 -103184997 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 5 985 563 275 113 71 chr4 52445302 52445682 -103184438 - RMER10A LTR ERVL -25 417 22 5 985 1546 37 5 10 chr4 52445911 52446104 -103184016 - B2_Mm1t SINE B2 0 193 2 6 985 301 192 80 30 chr4 52446327 52446440 -103183680 + L1MA4 LINE L1 5772 5906 -394 6 985 576 113 15 161 chr4 52446470 52446520 -103183600 + URR1B DNA MER1_type 108 145 -80 6 985 1307 89 39 0 chr4 52446520 52446699 -103183421 - B2_Mm2 SINE B2 -7 188 3 6 985 576 113 15 161 chr4 52446699 52446785 -103183335 + URR1B DNA MER1_type 146 224 -1 6 985 270 275 65 11 chr4 52446705 52446797 -103183323 - CYRA11_Mm Unknown Y-chromosome -361 256 160 6 985 12368 125 14 3 chr4 52446876 52449639 -103180481 + Lx LINE L1 3856 6652 -2 6 985 1170 41 7 0 chr4 52450260 52450405 -103179715 - B1_Mus1 SINE Alu -1 147 2 6 985 2002 210 91 50 chr4 52450511 52451096 -103179024 + Lx7 LINE L1 7088 7696 0 6 985 201 375 52 0 chr4 52451233 52451329 -103178791 + MIR SINE MIR 18 118 -144 6 985 190 73 0 47 chr4 52451718 52451761 -103178359 + (CCCCG)n Simple_repeat Simple_repeat 1 41 0 6 985 303 93 0 0 chr4 52452939 52452982 -103177138 + (T)n Simple_repeat Simple_repeat 1 43 0 6 985 216 0 0 0 chr4 52453601 52453625 -103176495 + (T)n Simple_repeat Simple_repeat 1 24 0 6 985 5153 36 42 8 chr4 52453646 52454290 -103175830 - L1Md_F2 LINE L1 0 6582 5917 6 985 349 24 0 0 chr4 52454290 52454332 -103175788 + L1Md_F2 LINE L1 5890 5931 -651 6 985 2059 169 35 47 chr4 52454343 52454772 -103175348 + RLTR28 LTR ERVL 1 424 -100 6 985 1848 219 114 43 chr4 52455305 52455839 -103174281 - RMER15 LTR ERVL 0 575 4 6 985 269 184 0 0 chr4 52455877 52455926 -103174194 + URR1B DNA MER1_type 177 225 0 6 985 610 224 97 51 chr4 52455937 52456153 -103173967 - RMER15 LTR ERVL -323 252 27 6 985 252 213 31 62 chr4 52456173 52456238 -103173882 - RMER15 LTR ERVL -511 64 2 6 985 238 103 0 93 chr4 52457521 52457580 -103172540 + T-rich Low_complexity Low_complexity 14 68 0 6 985 1047 78 28 0 chr4 52457580 52457721 -103172399 - B1_Mus1 SINE Alu -2 146 2 6 985 238 103 0 93 chr4 52457721 52457736 -103172384 + T-rich Low_complexity Low_complexity 1 13 0 6 985 22 109 0 0 chr4 52457800 52457892 -103172228 + AT_rich Low_complexity Low_complexity 1 92 0 6 985 210 233 11 65 chr4 52459029 52459121 -103170999 + T-rich Low_complexity Low_complexity 5 91 0 6 985 22 80 0 0 chr4 52459690 52459740 -103170380 + AT_rich Low_complexity Low_complexity 1 50 0 6 985 281 208 103 13 chr4 52460041 52460119 -103170001 - MLT1A1 LTR MaLR -318 90 6 6 985 1393 138 9 4 chr4 52461026 52461251 -103168869 + URR1A DNA MER1_type 1 226 0 6 985 1007 85 50 0 chr4 52461592 52461733 -103168387 + B1_Mus1 SINE Alu 1 148 0 6 985 1367 60 44 0 chr4 52461786 52461968 -103168152 + B2_Mm1a SINE B2 1 190 -3 6 985 441 0 0 0 chr4 52463424 52463473 -103166647 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 985 21 0 0 0 chr4 52464351 52464372 -103165748 + AT_rich Low_complexity Low_complexity 1 21 0 6 985 397 292 132 21 chr4 52464566 52464755 -103165365 - ID_B1 SINE B4 0 224 15 6 985 40 37 0 0 chr4 52465048 52465102 -103165018 + AT_rich Low_complexity Low_complexity 1 54 0 6 985 318 237 146 31 chr4 52465138 52465234 -103164886 + PB1D7 SINE Alu 12 118 -2 6 985 786 333 148 60 chr4 52465933 52466364 -103163756 - MER70A LTR ERVL 0 472 4 6 985 606 269 48 52 chr4 52466389 52466620 -103163500 - MER70-int LTR ERVL -17 5006 4777 6 985 444 231 122 16 chr4 52466761 52466884 -103163236 - B1_Mus2 SINE Alu -11 136 1 6 985 2388 191 60 10 chr4 52466884 52467371 -103162749 - RMER5 LTR ERV1 -16 518 8 6 985 709 280 85 27 chr4 52467532 52467756 -103162364 - MER70-int LTR ERVL -544 4479 4243 6 985 944 266 107 3 chr4 52468242 52468540 -103161580 - MER70-int LTR ERVL -3997 1026 698 6 985 859 237 92 24 chr4 52468597 52468913 -103161207 - MTE2b LTR MaLR 0 379 9 6 985 365 275 84 7 chr4 52468928 52469071 -103161049 - MER70-int LTR ERVL -4482 541 388 6 985 580 306 148 60 chr4 52469297 52469728 -103160392 - MER70A LTR ERVL 0 472 4 6 985 25 31 0 0 chr4 52471114 52471146 -103158974 + AT_rich Low_complexity Low_complexity 1 32 0 6 985 198 0 0 0 chr4 52472292 52472314 -103157806 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 985 1188 35 0 0 chr4 52472314 52472456 -103157664 - B1_Mus2 SINE Alu -4 143 2 6 985 224 349 0 0 chr4 52472503 52472566 -103157554 - ID4_ SINE ID -8 75 13 6 985 810 215 51 26 chr4 52472661 52472875 -103157245 + B3A SINE B2 1 216 0 6 985 22 35 0 0 chr4 52473179 52473208 -103156912 + AT_rich Low_complexity Low_complexity 1 29 0 6 985 22 0 0 0 chr4 52473330 52473352 -103156768 + AT_rich Low_complexity Low_complexity 1 22 0 6 985 284 301 147 3 chr4 52473593 52473794 -103156326 - L1MA7 LINE L1 -305 6007 5785 6 985 783 188 207 23 chr4 52474421 52474595 -103155525 + B3 SINE B2 2 207 -9 6 985 198 71 0 0 chr4 52475327 52475355 -103154765 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 6 985 618 213 57 0 chr4 52475371 52475493 -103154627 - B1_Mus1 SINE Alu -15 133 5 6 985 26 74 0 0 chr4 52475548 52475602 -103154518 + AT_rich Low_complexity Low_complexity 1 54 0 6 985 450 36 0 0 chr4 52476094 52476149 -103153971 - ORR1A2 LTR MaLR 0 326 272 6 985 4815 65 8 23 chr4 52476224 52476873 -103153247 - L1_Mus2 LINE L1 0 6566 5928 6 985 1593 151 48 0 chr4 52476873 52477144 -103152976 - ORR1A2 LTR MaLR -42 285 2 6 985 656 261 62 12 chr4 52477755 52477951 -103152169 - B3A SINE B2 -11 205 2 6 985 334 359 96 50 chr4 52480861 52480963 -103149157 - L1M5 LINE L1 -558 5682 5573 6 985 188 0 74 0 chr4 52480963 52480990 -103149130 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 985 1119 66 0 0 chr4 52480990 52481126 -103148994 - B1_Mus2 SINE Alu -10 137 2 6 985 334 359 96 50 chr4 52481126 52481398 -103148722 - L1M5 LINE L1 -668 5572 5291 6 985 443 267 149 59 chr4 52484580 52484835 -103145285 - LTR41 LTR ERVL -4 764 487 6 985 1012 95 0 33 chr4 52486734 52486834 -103143286 - B1_Mus1 SINE Alu 0 148 53 6 985 3259 66 11 43 chr4 52486834 52487296 -103142824 + LTRIS5 LTR ERV1 1 447 0 6 985 1012 95 0 33 chr4 52487296 52487347 -103142773 - B1_Mus1 SINE Alu -96 52 2 6 985 1563 188 57 84 chr4 52489929 52490204 -103139916 - ORR1C2 LTR MaLR -19 365 99 6 985 1198 61 0 0 chr4 52490204 52490351 -103139769 - B1_Mus1 SINE Alu 0 148 2 6 985 1563 188 57 84 chr4 52490351 52490446 -103139674 - ORR1C2 LTR MaLR -286 98 5 6 985 239 312 58 17 chr4 52491971 52492144 -103137976 - L1MA6 LINE L1 -117 6183 6004 6 985 620 205 176 9 chr4 52492220 52492387 -103137733 - MTEa LTR MaLR -1 378 163 6 985 593 93 0 20 chr4 52492388 52492487 -103137633 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 6 985 239 255 71 0 chr4 52492537 52492635 -103137485 - L1M2 LINE L1 -4034 2815 2711 6 985 236 225 100 0 chr4 52492864 52492944 -103137176 + L1_Mur3 LINE L1 3297 3384 -2496 6 985 1239 234 91 21 chr4 52492958 52493289 -103136831 - ORR1D1 LTR MaLR -20 354 1 6 985 476 219 38 2 chr4 52493660 52493787 -103136333 + L1M2 LINE L1 3513 3642 -2504 6 985 21 36 0 0 chr4 52495556 52495584 -103134536 + AT_rich Low_complexity Low_complexity 1 28 0 6 985 426 319 134 57 chr4 52495743 52496168 -103133952 + L1MEf LINE L1 1075 1532 -4668 6 985 264 205 23 35 chr4 52496241 52496327 -103133793 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 985 852 255 20 0 chr4 52496469 52496673 -103133447 + B3 SINE B2 5 212 -4 6 985 181 102 0 58 chr4 52497428 52497480 -103132640 + T-rich Low_complexity Low_complexity 6 54 0 6 985 335 206 257 37 chr4 52497937 52498124 -103131996 - Lx9 LINE L1 -5 7639 7412 6 985 236 100 0 91 chr4 52498115 52498159 -103131961 - Lx9 LINE L1 -1256 6388 6349 6 985 336 130 0 0 chr4 52498165 52498234 -103131886 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 985 2841 230 163 35 chr4 52498271 52499149 -103130971 - Lx9 LINE L1 -306 7338 6349 6 985 204 67 0 0 chr4 52499155 52499185 -103130935 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 985 216 0 0 0 chr4 52501247 52501271 -103128849 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 985 1242 27 0 20 chr4 52501300 52501449 -103128671 - B1_Mus2 SINE Alu 0 147 2 2 985 364 258 114 0 chr4 52501462 52501594 -103128526 - MIR SINE MIR -56 206 60 3 985 432 240 212 22 chr4 52501632 52501905 -103128215 - RLTR15 LTR ERVK -15 344 20 4 985 252 77 0 0 chr4 52502375 52502414 -103127706 + (A)n Simple_repeat Simple_repeat 1 39 0 5 985 8079 206 107 22 chr4 52503023 52506993 -103123127 + L1_Mus3 LINE L1 2278 6618 -20 6 985 792 83 0 0 chr4 52506993 52507102 -103123018 + (TC)n Simple_repeat Simple_repeat 2 110 0 7 985 1284 84 0 0 chr4 52507104 52507283 -103122837 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 8 985 428 122 116 47 chr4 52507295 52507381 -103122739 + ORR1A2 LTR MaLR 1 92 -235 9 985 736 51 0 10 chr4 52507377 52507476 -103122644 - BC1_Mm scRNA scRNA -54 98 1 1 985 1404 107 0 0 chr4 52507479 52507676 -103122444 + ORR1A2 LTR MaLR 83 279 -48 9 985 204 125 0 0 chr4 52507795 52507827 -103122293 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 985 272 238 136 45 chr4 52508412 52508544 -103121576 - L1MA6 LINE L1 -7 6293 6150 1 985 2696 122 120 0 chr4 52510224 52510657 -103119463 - L1_Mus1 LINE L1 -1 6566 6082 1 985 3829 63 0 10 chr4 52510657 52511263 -103118857 + L1_Mus1 LINE L1 5485 6085 -553 1 985 180 0 0 0 chr4 52511403 52511423 -103118697 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 985 272 272 77 10 chr4 52511713 52511817 -103118303 - L3 LINE CR1 -288 4201 4091 1 985 282 350 99 22 chr4 52512918 52513099 -103117021 + MIR SINE MIR 6 200 -62 1 985 591 85 0 0 chr4 52513936 52514018 -103116102 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 985 183 80 0 0 chr4 52514020 52514045 -103116075 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 985 3053 113 38 2 chr4 52515524 52516001 -103114119 - Lx2 LINE L1 0 6997 6504 1 985 242 316 52 10 chr4 52516036 52516132 -103113988 - MIRb SINE MIR -71 197 98 2 985 220 0 0 79 chr4 52516800 52516838 -103113282 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 985 814 177 7 20 chr4 52516977 52517127 -103112993 + B1_Mur2 SINE Alu 1 148 -1 2 985 927 303 98 18 chr4 52517132 52517579 -103112541 - Lx8 LINE L1 -157 7316 6834 2 985 183 42 0 0 chr4 52517613 52517637 -103112483 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 985 482 105 0 21 chr4 52517667 52517764 -103112356 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 2 985 501 17 0 0 chr4 52517767 52517825 -103112295 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 985 405 250 107 74 chr4 52517843 52517964 -103112156 - B3A SINE B2 -38 160 36 2 985 668 279 59 62 chr4 52518193 52518839 -103111281 - L1MA9 LINE L1 -192 6120 5477 2 985 283 222 41 82 chr4 52519308 52519406 -103110714 - Lx8 LINE L1 -1570 5903 5810 2 985 311 342 87 7 chr4 52519428 52519578 -103110542 - L1M4 LINE L1 -677 5507 5346 2 985 1167 128 0 0 chr4 52520164 52520431 -103109689 + (TG)n Simple_repeat Simple_repeat 1 267 0 3 985 736 250 123 28 chr4 52520453 52520704 -103109416 - B4A SINE B4 -17 275 1 3 985 22 0 0 0 chr4 52523335 52523357 -103106763 + AT_rich Low_complexity Low_complexity 1 22 0 3 985 296 284 53 44 chr4 52523404 52523518 -103106602 - B1_Mur4 SINE Alu -1 149 35 3 985 696 264 110 0 chr4 52523417 52523599 -103106521 - ID_B1 SINE B4 -9 215 14 3 985 1152 199 147 16 chr4 52523896 52524203 -103105917 + ORR1D1 LTR MaLR 1 347 -27 3 985 346 201 75 18 chr4 52525924 52526066 -103104054 - L1MDa LINE L1 -5336 1204 1035 3 985 253 393 96 0 chr4 52526231 52526409 -103103711 - L1MDa LINE L1 -5864 769 575 3 985 355 262 47 0 chr4 52526613 52526720 -103103400 - L1MDa LINE L1 -6439 194 83 3 985 257 109 22 0 chr4 52527788 52527834 -103102286 - RMER1B Other Other -10 1056 1010 3 985 2275 221 132 49 chr4 52527855 52528657 -103101463 - RMER1B Other Other -153 913 45 3 985 2120 163 53 46 chr4 52530307 52530724 -103099396 - RLTR9B2 LTR ERVK 0 420 1 3 985 1328 50 77 6 chr4 52530833 52531015 -103099105 + B2_Mm2 SINE B2 1 195 0 4 985 202 388 19 28 chr4 52531037 52531143 -103098977 - L2 LINE L2 -701 2718 2614 4 985 932 259 88 41 chr4 52531402 52531869 -103098251 - L1MB3 LINE L1 -5 6178 5690 4 985 378 347 51 0 chr4 52532002 52532100 -103098020 - PB1D10 SINE Alu -46 103 1 4 985 397 329 7 14 chr4 52532291 52532433 -103097687 - RSINE1 SINE B4 -21 144 4 4 985 208 272 109 0 chr4 52532466 52532558 -103097562 + MIRc SINE MIR 97 198 -70 4 985 4534 94 117 28 chr4 52532689 52533035 -103097085 + RMER17D2 LTR ERVK 1 401 -408 4 985 842 60 8 0 chr4 52533035 52533152 -103096968 + (TCTCC)n Simple_repeat Simple_repeat 2 119 0 4 985 4534 94 117 28 chr4 52533152 52533548 -103096572 + RMER17D2 LTR ERVK 402 809 0 4 985 23 33 0 0 chr4 52534365 52534395 -103095725 + AT_rich Low_complexity Low_complexity 1 30 0 4 985 719 289 68 10 chr4 52534425 52534617 -103095503 - ID_B1 SINE B4 -4 220 18 4 985 183 42 0 0 chr4 52535340 52535364 -103094756 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 985 342 342 138 21 chr4 52535702 52536123 -103093997 + L2c LINE L2 2146 2615 -804 5 985 187 380 53 9 chr4 52536499 52536613 -103093507 + L2c LINE L2 3049 3167 -220 5 985 658 180 0 54 chr4 52537186 52537333 -103092787 - Lx7 LINE L1 0 7696 7558 5 985 6105 99 22 19 chr4 52537317 52538208 -103091912 + Lx3A LINE L1 6081 6974 -7 5 985 224 221 0 49 chr4 52538219 52538300 -103091820 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 5 985 401 222 27 86 chr4 52538305 52538492 -103091628 - Lx7 LINE L1 -175 7521 7346 5 985 1661 58 36 24 chr4 52539685 52539933 -103090187 + Lx2 LINE L1 6393 6643 -354 5 985 1447 99 4 22 chr4 52539933 52540160 -103089960 + Lx2 LINE L1 6775 6997 0 5 985 266 371 112 0 chr4 52540479 52540568 -103089552 - ID_B1 SINE B4 -42 182 84 5 985 397 293 42 2 chr4 52540862 52541026 -103089094 + MLT2C1 LTR ERVL 3 182 -232 5 985 186 245 9 122 chr4 52542566 52542673 -103087447 + L2a LINE L2 3241 3335 -91 5 985 282 260 37 74 chr4 52543243 52543351 -103086769 - MER3 DNA MER1_type -105 104 1 5 985 1895 262 192 28 chr4 52543509 52544368 -103085752 - Lx8 LINE L1 -3 7470 6471 6 985 22 0 0 0 chr4 52544778 52544800 -103085320 + AT_rich Low_complexity Low_complexity 1 22 0 6 985 211 111 0 62 chr4 52544987 52545035 -103085085 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 985 1540 222 90 57 chr4 52545036 52545228 -103084892 + L1MCa LINE L1 1097 1299 -5209 6 985 1915 70 3 56 chr4 52545228 52545514 -103084606 + Lx LINE L1 6384 6654 0 6 985 1540 222 90 57 chr4 52545514 52545991 -103084129 + L1MCa LINE L1 1300 1788 -4720 6 985 477 90 0 0 chr4 52546011 52546078 -103084042 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 985 1085 235 107 8 chr4 52546078 52546434 -103083686 - L1MA9 LINE L1 -1 6311 5921 6 985 216 0 0 0 chr4 52547870 52547894 -103082226 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 985 32005 73 8 6 chr4 52548703 52553969 -103076151 + L1Md_F2 LINE L1 352 5586 -297 6 985 7958 53 2 8 chr4 52553969 52554971 -103075149 + L1Md_F2 LINE L1 5587 6582 0 6 985 253 72 42 42 chr4 52555715 52555787 -103074333 + T-rich Low_complexity Low_complexity 3 74 0 6 985 581 268 183 85 chr4 52555943 52556446 -103073674 + RMER13A LTR ERVK 165 790 -118 7 985 401 0 20 0 chr4 52556536 52556585 -103073535 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 985 585 272 19 25 chr4 52556605 52556767 -103073353 - B4 SINE B4 -6 286 126 7 985 576 42 0 0 chr4 52556934 52557005 -103073115 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 985 3459 30 0 0 chr4 52557189 52557585 -103072535 + MTA_Mm LTR MaLR 1 396 0 7 985 205 338 25 12 chr4 52557751 52557832 -103072288 + MIR SINE MIR 17 98 -110 7 985 984 164 0 0 chr4 52557933 52558110 -103072010 + CT-rich Low_complexity Low_complexity 4 180 0 7 985 225 0 0 0 chr4 52558113 52558138 -103071982 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 7 985 328 337 89 80 chr4 52558290 52558616 -103071504 + MLT1J2 LTR MaLR 110 438 -10 7 985 1405 203 25 40 chr4 52559426 52559749 -103070371 - MTD LTR MaLR -2 417 100 7 986 3085 68 5 0 chr4 52560478 52560874 -103069246 + L1Md_F2 LINE L1 6173 6570 -12 8 986 414 0 0 0 chr4 52561169 52561215 -103068905 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 986 812 290 34 54 chr4 52561324 52561619 -103068501 - B4 SINE B4 0 292 4 8 986 943 154 149 34 chr4 52561795 52562064 -103068056 - Lx9 LINE L1 -1 7643 7344 8 986 315 235 0 0 chr4 52563549 52563600 -103066520 + ID SINE ID 3 53 -171 8 986 315 47 0 0 chr4 52564228 52564241 -103065879 + (TTTC)n Simple_repeat Simple_repeat 2 14 0 8 986 894 45 0 0 chr4 52564241 52564352 -103065768 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 8 986 315 47 0 0 chr4 52564352 52564381 -103065739 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 8 986 1055 139 0 6 chr4 52564381 52564562 -103065558 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 986 4060 90 16 12 chr4 52564610 52565175 -103064945 + RMER2 LTR ERV1 1 567 0 8 986 232 264 0 153 chr4 52565785 52565870 -103064250 + PB1D10 SINE Alu 8 79 -38 9 986 366 372 95 12 chr4 52566330 52566583 -103063537 + LTR41 LTR ERVL 436 709 -59 9 986 307 261 139 32 chr4 52567964 52568122 -103061998 - L1M4 LINE L1 -3260 2886 2712 9 986 1804 216 31 12 chr4 52568388 52568801 -103061319 - MTC LTR MaLR 0 421 1 9 986 2221 177 151 4 chr4 52568962 52569513 -103060607 - Lx2B LINE L1 0 7000 6369 9 986 3722 57 6 10 chr4 52569526 52570005 -103060115 - Lx3_Mus LINE L1 -5 7004 6528 9 986 3028 76 30 4 chr4 52570005 52570470 -103059650 + Lx3_Mus LINE L1 6016 6492 -517 9 986 1841 184 11 3 chr4 52570466 52570836 -103059284 - Lx2B LINE L1 -618 6382 6010 9 986 213 332 93 62 chr4 52570931 52571156 -103058964 - L2 LINE L2 -905 2514 2283 9 986 231 114 0 0 chr4 52571498 52571533 -103058587 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 9 986 1316 62 6 0 chr4 52571728 52571907 -103058213 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 986 366 327 47 19 chr4 52572210 52572422 -103057698 - Lx8 LINE L1 -786 6687 6470 9 986 1176 261 79 8 chr4 52572421 52572800 -103057320 + Lx8 LINE L1 6784 7189 -284 1 986 7481 155 34 18 chr4 52573036 52575032 -103055088 - Lx2B LINE L1 -2 6998 4974 1 986 192 152 0 0 chr4 52576075 52576108 -103054012 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 986 564 87 0 0 chr4 52576402 52576494 -103053626 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 986 203 267 53 13 chr4 52576756 52576832 -103053288 - MIR3 SINE MIR -45 163 85 1 986 1084 85 0 0 chr4 52577552 52577693 -103052427 + B1_Mm SINE Alu 1 141 -6 1 986 201 279 101 0 chr4 52577872 52577951 -103052169 - MIRb SINE MIR -158 110 24 1 986 775 264 13 0 chr4 52580451 52580610 -103049510 + B3A SINE B2 1 161 -37 1 986 25 31 0 0 chr4 52580615 52580647 -103049473 + AT_rich Low_complexity Low_complexity 1 32 0 1 986 467 270 86 16 chr4 52580803 52580931 -103049189 + B1F SINE Alu 7 143 -6 1 986 734 318 35 21 chr4 52581014 52581297 -103048823 + B4 SINE B4 1 287 -5 1 986 7624 38 1 6 chr4 52583118 52584089 -103046031 - L1Md_F2 LINE L1 0 6582 5617 1 986 559 253 54 79 chr4 52584152 52584392 -103045728 - Lx8 LINE L1 -55 7418 7185 1 986 351 44 0 0 chr4 52584464 52584509 -103045611 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 986 369 0 0 0 chr4 52584509 52584549 -103045571 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 986 2235 85 6 57 chr4 52584580 52584916 -103045204 - ORR1A2 LTR MaLR -8 319 1 1 986 420 247 90 6 chr4 52585091 52585258 -103044862 - Lx8 LINE L1 -1524 5949 5769 1 986 371 309 128 10 chr4 52585265 52585468 -103044652 - L1ME3A LINE L1 -29 6144 5918 1 986 447 202 0 0 chr4 52585635 52585759 -103044361 + (CATA)n Simple_repeat Simple_repeat 1 124 0 1 986 369 62 0 0 chr4 52586595 52586643 -103043477 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 1 986 232 303 69 14 chr4 52587151 52587295 -103042825 + L1_Mur1 LINE L1 1618 1769 -4117 1 986 546 321 129 4 chr4 52587412 52587684 -103042436 - Lx8 LINE L1 -139 7334 7029 1 986 713 338 78 21 chr4 52588039 52588331 -103041789 + L1M2 LINE L1 2130 2423 -3720 1 986 2269 80 59 9 chr4 52588331 52588672 -103041448 + L1_Mus3 LINE L1 6281 6638 0 1 986 713 338 78 21 chr4 52588672 52589409 -103040711 + L1M2 LINE L1 2424 3216 -2927 1 986 345 82 0 0 chr4 52589441 52589490 -103040630 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 1 986 1416 177 38 78 chr4 52589519 52589863 -103040257 + ORR1D1 LTR MaLR 45 374 0 1 986 285 29 0 0 chr4 52589877 52589911 -103040209 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1 986 189 0 0 0 chr4 52589977 52589998 -103040122 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 986 653 190 80 0 chr4 52590023 52590160 -103039960 - B1_Mus1 SINE Alu 0 148 1 1 986 2686 157 18 14 chr4 52590402 52590898 -103039222 + Lx2B LINE L1 5650 6147 -853 1 986 1040 312 107 9 chr4 52590934 52591270 -103038850 - MTE-int LTR MaLR -307 1273 905 1 986 1337 325 115 14 chr4 52591408 52591982 -103038138 - MTE-int LTR MaLR -948 632 1 1 986 563 305 139 21 chr4 52592046 52592284 -103037836 - ORR1E LTR MaLR -93 266 1 1 986 505 335 41 36 chr4 52592422 52592617 -103037503 - B3A SINE B2 -1 197 2 1 986 22 0 0 0 chr4 52592752 52592774 -103037346 + AT_rich Low_complexity Low_complexity 1 22 0 1 986 1067 304 42 12 chr4 52592984 52593664 -103036456 + Lx6 LINE L1 20 686 -7042 1 986 1699 178 64 25 chr4 52593659 52594097 -103036023 + Lx6 LINE L1 860 1314 -6414 1 986 14232 172 26 17 chr4 52594109 52594729 -103035391 + Lx6 LINE L1 2846 3480 -2400 1 986 198 0 0 0 chr4 52594729 52594751 -103035369 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 986 14232 189 33 16 chr4 52594751 52598656 -103031464 + Lx6 LINE L1 3481 7455 -5 1 986 337 298 31 31 chr4 52599014 52599111 -103031009 - B4A SINE B4 -165 127 31 1 986 3516 157 50 32 chr4 52599199 52599877 -103030243 + RLTR17 LTR ERVK 3 692 0 1 986 3607 173 47 23 chr4 52600027 52600730 -103029390 + RMER6D LTR ERVK 1 720 0 1 986 1099 90 0 0 chr4 52600808 52600953 -103029167 + B1_Mus2 SINE Alu 1 145 -2 1 986 420 77 0 0 chr4 52600962 52601027 -103029093 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1 986 441 0 0 0 chr4 52601567 52601616 -103028504 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 986 593 208 128 0 chr4 52602175 52602300 -103027820 - RSINE1 SINE B4 -22 143 3 1 986 3017 150 23 12 chr4 52602541 52603059 -103027061 + Lx LINE L1 6131 6654 0 1 986 337 305 100 92 chr4 52604423 52604694 -103025426 - MTEa LTR MaLR -10 369 79 1 986 618 284 61 57 chr4 52604865 52605051 -103025069 - MLT1D LTR MaLR -5 500 300 1 986 703 202 205 11 chr4 52605051 52605236 -103024884 + URR1A DNA MER1_type 5 225 -1 1 986 618 284 61 57 chr4 52605236 52605295 -103024825 - MLT1D LTR MaLR -206 299 254 1 986 405 278 84 30 chr4 52605892 52606059 -103024061 - MLT1D LTR MaLR -279 226 51 1 986 27 0 0 0 chr4 52606309 52606336 -103023784 + AT_rich Low_complexity Low_complexity 1 27 0 1 986 207 0 0 0 chr4 52608742 52608765 -103021355 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 986 318 270 62 16 chr4 52608794 52608922 -103021198 - Lx9 LINE L1 -215 7429 7296 1 986 492 299 31 52 chr4 52608921 52609150 -103020970 - Lx9 LINE L1 -513 7131 6908 1 986 23 33 0 0 chr4 52609258 52609288 -103020832 + AT_rich Low_complexity Low_complexity 1 30 0 1 986 254 163 0 20 chr4 52609330 52609380 -103020740 + Lx4B LINE L1 6686 6734 -324 1 986 275 374 30 6 chr4 52610532 52610696 -103019424 - MER58B DNA MER1_type 0 341 174 1 986 180 0 0 0 chr4 52611980 52612000 -103018120 + (T)n Simple_repeat Simple_repeat 1 20 0 1 986 2763 207 55 12 chr4 52612318 52612918 -103017202 + Lx6 LINE L1 6820 7445 -15 1 986 522 0 0 0 chr4 52612920 52612978 -103017142 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 986 1081 255 38 51 chr4 52613184 52613498 -103016622 + MTD LTR MaLR 3 312 -107 1 986 330 236 12 12 chr4 52613548 52613790 -103016330 + CT-rich Low_complexity Low_complexity 1 242 0 1 986 444 19 136 7 chr4 52613792 52613947 -103016173 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 1 986 240 89 30 83 chr4 52613953 52614193 -103015927 + CT-rich Low_complexity Low_complexity 1 227 0 1 986 202 55 109 18 chr4 52614193 52614248 -103015872 + (CCTG)n Simple_repeat Simple_repeat 2 61 0 1 986 309 126 113 36 chr4 52614249 52614473 -103015647 + (TCTCTG)n Simple_repeat Simple_repeat 1 241 0 1 986 568 159 54 156 chr4 52614473 52614659 -103015461 + MTD LTR MaLR 253 419 0 1 986 251 266 0 12 chr4 52614660 52614740 -103015380 + L1MCa LINE L1 2285 2363 -4145 1 986 404 54 0 0 chr4 52614895 52614951 -103015169 + B1_Mus1 SINE Alu 1 56 -92 1 986 1606 231 139 31 chr4 52614939 52615390 -103014730 - RMER12 LTR ERVK -154 1168 768 1 986 198 103 0 0 chr4 52615390 52615419 -103014701 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 1 986 1606 221 139 25 chr4 52615419 52615549 -103014571 - RMER12 LTR ERVK -555 767 642 1 986 1577 228 74 19 chr4 52615548 52615981 -103014139 - RMER12 LTR ERVK -865 457 1 1 986 1499 283 36 12 chr4 52615981 52616542 -103013578 + L1MCa LINE L1 2461 3034 -3287 1 986 244 281 76 19 chr4 52616642 52616747 -103013373 - MER82 DNA MER2_type -453 200 90 1 986 4579 30 19 0 chr4 52616783 52617322 -103012798 - L1Md_F2 LINE L1 0 6582 6034 1 986 479 363 43 86 chr4 52617393 52617697 -103012423 - B4 SINE B4 0 292 2 1 986 343 318 112 28 chr4 52617717 52617895 -103012225 - L2a LINE L2 -4 3422 3230 1 986 351 0 0 0 chr4 52617897 52617936 -103012184 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 986 233 333 138 0 chr4 52618254 52618341 -103011779 + MER20 DNA MER1_type 48 146 -73 1 986 209 276 17 0 chr4 52618631 52618689 -103011431 + GA-rich Low_complexity Low_complexity 5 63 0 1 986 539 326 29 59 chr4 52618961 52619199 -103010921 + B4 SINE B4 2 232 -60 1 986 789 41 0 0 chr4 52619250 52619347 -103010773 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 986 183 42 0 0 chr4 52620972 52620996 -103009124 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 986 642 13 0 0 chr4 52621160 52621235 -103008885 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 986 420 264 31 16 chr4 52621329 52621456 -103008664 - B1F1 SINE Alu -8 141 13 1 986 234 207 65 109 chr4 52622035 52622127 -103007993 - PB1D7 SINE Alu -32 88 1 1 986 215 257 0 129 chr4 52622065 52622150 -103007970 - B4 SINE B4 -148 144 71 1 986 391 325 119 14 chr4 52622150 52622428 -103007692 - L1MC4a LINE L1 -1992 5890 5584 1 986 477 235 123 27 chr4 52622428 52622534 -103007586 - Lx9 LINE L1 -4 7640 7525 1 986 306 0 0 0 chr4 52622534 52622568 -103007552 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1 986 477 235 123 27 chr4 52622568 52622680 -103007440 - Lx9 LINE L1 -120 7524 7401 1 986 521 267 148 0 chr4 52625357 52625492 -103004628 + RSINE1 SINE B4 2 156 -9 1 986 888 147 54 39 chr4 52626004 52626209 -103003911 - L1_Mur1 LINE L1 -1181 4705 4498 1 986 1392 134 53 34 chr4 52626209 52626471 -103003649 + Lx LINE L1 6388 6654 0 1 986 360 260 32 25 chr4 52626471 52626493 -103003627 - L1_Rod LINE L1 -1382 4465 4443 1 986 229 175 0 34 chr4 52627543 52627602 -103002518 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 1 986 3609 33 35 52 chr4 52627888 52628371 -103001749 + IAPLTR2_Mm LTR ERVK 1 475 0 1 986 267 200 50 10 chr4 52629426 52629527 -103000593 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 1 986 759 22 0 0 chr4 52629564 52629653 -103000467 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1 986 375 169 0 0 chr4 52629702 52629773 -103000347 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 986 363 44 0 0 chr4 52630266 52630311 -102999809 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 986 2532 188 208 9 chr4 52630312 52630957 -102999163 + Lx4B LINE L1 6279 7051 -7 1 986 290 196 69 0 chr4 52631117 52631219 -102998901 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 986 1861 160 144 14 chr4 52631738 52632105 -102998015 + RMER4B LTR ERVK 1 415 -170 1 986 702 156 173 6 chr4 52632886 52633058 -102997062 + ORR1C2 LTR MaLR 162 384 0 1 986 231 357 139 25 chr4 52633074 52633275 -102996845 + MIR SINE MIR 10 233 -29 1 986 238 319 14 0 chr4 52633292 52633364 -102996756 + GA-rich Low_complexity Low_complexity 4 76 0 1 986 527 328 82 82 chr4 52633435 52633727 -102996393 - MLT2B2 LTR ERVL -17 498 207 1 986 524 315 56 0 chr4 52633982 52634125 -102995995 - RSINE1 SINE B4 -13 152 2 2 986 447 229 36 0 chr4 52634154 52634294 -102995826 - HAL1-2a_MD LINE L1 -534 2490 2346 2 986 412 350 37 0 chr4 52634320 52634483 -102995637 - MIRc SINE MIR -38 230 62 2 986 246 301 127 25 chr4 52634778 52634935 -102995185 - MER58A DNA MER1_type 0 224 52 2 986 448 273 28 64 chr4 52635858 52635999 -102994121 + MIRb SINE MIR 25 160 -108 2 986 336 349 22 73 chr4 52636432 52636664 -102993456 + MLT1J1 LTR MaLR 72 291 -153 2 986 692 283 37 0 chr4 52637131 52637318 -102992802 + B3A SINE B2 1 194 -4 2 986 232 229 36 0 chr4 52637319 52637402 -102992718 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 2 986 1045 134 0 0 chr4 52637763 52637935 -102992185 - Lx2 LINE L1 0 6997 6826 2 986 14180 177 48 44 chr4 52637924 52639876 -102990244 - Lx2 LINE L1 -420 6577 4605 2 986 258 106 19 96 chr4 52639876 52639928 -102990192 - U6 snRNA snRNA -59 48 1 2 986 14180 177 48 44 chr4 52639928 52643938 -102986182 - Lx2 LINE L1 -420 4604 549 2 986 1257 154 18 4 chr4 52643934 52644162 -102985958 - L1_Mur2 LINE L1 -1262 4615 4385 2 986 527 53 0 0 chr4 52644160 52644238 -102985882 + L1_Mur1 LINE L1 4226 4308 -1578 2 986 217 350 17 8 chr4 52644300 52644418 -102985702 + GA-rich Low_complexity Low_complexity 1 119 0 2 986 3793 156 25 31 chr4 52645097 52645834 -102984286 + RMER6A LTR ERVK 1 719 -37 2 986 529 328 135 77 chr4 52646289 52646732 -102983388 + MT2A LTR ERVL 13 553 -1 2 986 1168 77 0 0 chr4 52646981 52647124 -102982996 - B1_Mus1 SINE Alu -2 146 4 2 986 305 267 0 19 chr4 52647431 52647534 -102982586 + CT-rich Low_complexity Low_complexity 2 102 0 2 986 531 0 0 0 chr4 52648711 52648770 -102981350 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 986 435 312 97 0 chr4 52649286 52649462 -102980658 + MER3 DNA MER1_type 17 209 0 2 986 2078 229 135 29 chr4 52649472 52650138 -102979982 + RMER19A LTR ERVK 1 737 0 2 986 388 343 95 12 chr4 52651015 52651183 -102978937 + LTR80A LTR ERVL 385 566 -17 2 986 235 253 93 0 chr4 52651527 52651602 -102978518 - MamGypLTR2b LTR Gypsy -57 865 784 2 986 803 271 11 76 chr4 52651960 52652236 -102977884 + RLTR11B LTR ERVK 5 262 -191 2 986 616 259 57 54 chr4 52652314 52652506 -102977614 + RLTR11B LTR ERVK 284 499 -29 2 986 555 173 18 0 chr4 52652874 52653042 -102977078 + (TA)n Simple_repeat Simple_repeat 1 171 0 2 986 207 154 0 0 chr4 52653423 52653437 -102976683 + A-rich Low_complexity Low_complexity 1 14 0 2 986 1652 31 0 0 chr4 52653437 52653629 -102976491 + B2_Mm1t SINE B2 2 193 0 2 986 207 154 0 0 chr4 52653629 52653653 -102976467 + A-rich Low_complexity Low_complexity 15 38 0 2 986 298 331 37 0 chr4 52654149 52654261 -102975859 - MER112 DNA MER1_type -65 196 82 2 986 189 0 0 0 chr4 52654261 52654282 -102975838 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 986 298 331 37 0 chr4 52654282 52654332 -102975788 - MER112 DNA MER1_type -180 81 29 2 986 676 295 18 5 chr4 52655452 52655670 -102974450 + ID_B1 SINE B4 2 222 -2 2 986 319 301 12 30 chr4 52656337 52656477 -102973643 + B4A SINE B4 3 172 -120 2 986 396 0 0 0 chr4 52656579 52656623 -102973497 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 986 232 410 47 16 chr4 52657758 52657949 -102972171 + L2a LINE L2 3032 3228 -198 2 986 694 330 5 24 chr4 52658080 52658291 -102971829 - B4A SINE B4 -85 207 1 2 986 23 68 0 0 chr4 52658662 52658706 -102971414 + AT_rich Low_complexity Low_complexity 1 44 0 2 986 354 305 112 18 chr4 52658724 52658894 -102971226 - Tigger7 DNA MER2_type -1 2490 2305 2 986 245 256 47 93 chr4 52660932 52661061 -102969059 - L2c LINE L2 -1 3386 3264 2 986 355 360 57 22 chr4 52661742 52661969 -102968151 + MLT1D LTR MaLR 267 501 -4 2 986 1075 297 46 113 chr4 52662115 52662488 -102967632 + MLT2B1 LTR ERVL 1 350 -170 2 986 3768 29 9 7 chr4 52662488 52662943 -102967177 - L1Md_F3 LINE L1 -14 6570 6115 2 986 1075 297 46 113 chr4 52662943 52663116 -102967004 + MLT2B1 LTR ERVL 351 510 -10 2 986 287 339 25 17 chr4 52663796 52663916 -102966204 + MIR SINE MIR 139 259 -3 2 986 220 349 75 47 chr4 52664241 52664560 -102965560 - L2c LINE L2 -58 3329 3002 2 986 868 204 276 17 chr4 52666071 52666365 -102963755 + ORR1D2 LTR MaLR 1 370 0 2 986 25 51 0 0 chr4 52666679 52666718 -102963402 + AT_rich Low_complexity Low_complexity 1 39 0 2 986 247 321 40 104 chr4 52666746 52666853 -102963267 + B1F1 SINE Alu 25 124 -25 2 986 2641 46 0 106 chr4 52666853 52667240 -102962880 + ORR1A1 LTR MaLR 1 346 0 2 986 247 321 40 104 chr4 52667240 52667257 -102962863 + B1F1 SINE Alu 125 141 -8 2 986 683 317 33 80 chr4 52668445 52668808 -102961312 + ORR1E LTR MaLR 9 354 -5 2 986 1872 333 50 18 chr4 52668823 52669477 -102960643 + ORR1E-int LTR MaLR 9 683 -897 2 986 783 200 133 6 chr4 52669502 52669683 -102960437 + B3 SINE B2 2 205 -11 2 986 624 283 85 23 chr4 52670246 52670506 -102959614 + B4A SINE B4 1 276 -16 2 986 606 28 0 0 chr4 52670553 52670625 -102959495 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 986 26 0 0 0 chr4 52671207 52671233 -102958887 + AT_rich Low_complexity Low_complexity 1 26 0 2 986 582 302 5 72 chr4 52671617 52671810 -102958310 + B3A SINE B2 3 182 -16 2 986 623 224 124 22 chr4 52672774 52672952 -102957168 + B3A SINE B2 3 198 0 2 986 414 0 0 0 chr4 52673127 52673173 -102956947 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 986 304 318 0 15 chr4 52673281 52673371 -102956749 + ID4 SINE ID 7 94 -58 2 986 1404 177 29 140 chr4 52673377 52673798 -102956322 - ORR1D1 LTR MaLR 0 374 1 2 986 247 330 80 32 chr4 52673798 52673986 -102956134 - L2a LINE L2 -304 3122 2926 2 986 411 73 0 0 chr4 52676577 52676632 -102953488 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 986 1201 276 43 26 chr4 52678998 52679419 -102950701 + Lx9 LINE L1 6688 7115 -529 2 986 454 318 16 0 chr4 52679431 52679560 -102950560 - ID_B1 SINE B4 -3 221 91 2 986 207 69 0 0 chr4 52679654 52679683 -102950437 + (A)n Simple_repeat Simple_repeat 1 29 0 2 986 187 194 0 43 chr4 52680648 52680718 -102949402 + (TATG)n Simple_repeat Simple_repeat 1 67 0 2 986 218 317 28 65 chr4 52680850 52680958 -102949162 - RSINE1 SINE B4 -60 105 2 2 986 334 354 109 86 chr4 52681501 52681879 -102948241 - LTR16E2 LTR ERVL -2 566 178 2 986 288 91 0 0 chr4 52681879 52681923 -102948197 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 986 334 354 109 86 chr4 52681923 52681986 -102948134 - LTR16E2 LTR ERVL -391 177 115 2 986 840 342 53 35 chr4 52683585 52684015 -102946105 + MLT1C LTR MaLR 2 439 -28 2 986 3877 194 19 28 chr4 52684091 52684817 -102945303 - Lx5 LINE L1 -1078 5972 5263 2 986 5752 67 7 0 chr4 52684817 52685554 -102944566 - L1_Mus1 LINE L1 -3 6564 5823 2 986 3877 195 13 42 chr4 52685554 52685836 -102944284 - Lx5 LINE L1 -618 5262 4987 2 986 5393 168 11 16 chr4 52685855 52686809 -102943311 - Lx4B LINE L1 -4 7054 6105 2 986 1077 193 39 0 chr4 52686822 52687055 -102943065 - Lx5 LINE L1 -1898 3982 3741 2 123 37314 33 0 0 chr4 52687063 52692475 -102937645 - L1Md_T LINE L1 0 6582 1170 2 987 4221 148 30 35 chr4 52692481 52693385 -102936735 - L1Md_T LINE L1 -5411 1205 307 2 987 7440 191 49 47 chr4 52693386 52694614 -102935506 - Lx5 LINE L1 -2126 3754 2508 2 987 3826 118 43 10 chr4 52694614 52695194 -102934926 + MT2B LTR ERVL 3 601 0 2 987 7440 191 49 47 chr4 52695194 52695639 -102934481 - Lx5 LINE L1 -3373 2507 2067 2 987 396 0 0 0 chr4 52695639 52695683 -102934437 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 987 7440 191 49 47 chr4 52695683 52696029 -102934091 - Lx5 LINE L1 -3814 2066 1729 2 987 4209 31 64 21 chr4 52696036 52696596 -102933524 - RLTR6_Mm LTR ERV1 -70 584 1 2 987 1387 178 145 0 chr4 52696597 52696963 -102933157 - Lx5 LINE L1 -4156 1721 1303 2 987 1092 187 5 0 chr4 52697007 52697205 -102932915 - L1_Mur2 LINE L1 -234 5643 5445 2 987 15483 154 39 17 chr4 52698342 52700171 -102929949 - Lx4A LINE L1 -2 7056 5174 2 987 1204 42 0 0 chr4 52700171 52700313 -102929807 + B1_Mm SINE Alu 1 142 -5 2 987 186 43 0 0 chr4 52700317 52700340 -102929780 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 987 15483 140 51 17 chr4 52700340 52702658 -102927462 - Lx4A LINE L1 -704 5173 2780 2 987 718 127 6 31 chr4 52702627 52702789 -102927331 - Lx4A LINE L1 -3827 2050 1893 2 987 3679 185 41 11 chr4 52703242 52704547 -102925573 + L1_Mur3 LINE L1 548 1887 -3993 2 987 910 292 150 35 chr4 52704982 52705503 -102924617 + Lx8 LINE L1 6892 7472 -1 2 987 192 40 0 0 chr4 52706046 52706071 -102924049 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2 987 211 91 22 43 chr4 52706072 52706118 -102924002 + T-rich Low_complexity Low_complexity 5 49 0 2 987 1097 275 69 3 chr4 52707260 52707548 -102922572 - ORR1D2 LTR MaLR -61 309 3 2 987 231 349 45 36 chr4 52707865 52707975 -102922145 + MLT1I LTR MaLR 279 389 -22 2 987 512 287 77 6 chr4 52708200 52708368 -102921752 + B3A SINE B2 3 182 -16 2 987 311 271 74 12 chr4 52708469 52708550 -102921570 - ID4_ SINE ID -60 92 12 2 987 268 329 123 58 chr4 52709823 52709994 -102920126 - MLT1J2 LTR MaLR -218 230 49 2 987 2013 140 16 0 chr4 52710428 52710750 -102919370 + ORR1A2 LTR MaLR 1 327 0 2 987 1222 41 0 7 chr4 52710938 52711085 -102919035 - B1_Mm SINE Alu 0 147 2 2 987 9391 91 46 2 chr4 52711352 52713576 -102916544 + L1_Mus3 LINE L1 4318 6635 -3 2 987 447 19 0 0 chr4 52714276 52714328 -102915792 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 987 512 340 85 33 chr4 52714460 52714883 -102915237 - MLT1J2 LTR MaLR -2 446 2 2 987 594 100 32 53 chr4 52716119 52716214 -102913906 + RMER6C LTR ERVK 1 93 -597 2 987 430 214 107 0 chr4 52717137 52717240 -102912880 - PB1D9 SINE Alu 0 120 7 2 987 22 0 0 0 chr4 52717854 52717876 -102912244 + AT_rich Low_complexity Low_complexity 1 22 0 2 987 831 225 6 6 chr4 52718803 52718986 -102911134 - Lx5 LINE L1 -12 7038 6856 2 987 300 316 0 0 chr4 52720593 52720669 -102909451 - MER5B DNA MER1_type -24 154 79 2 987 22 0 0 0 chr4 52720687 52720709 -102909411 + AT_rich Low_complexity Low_complexity 1 22 0 2 987 659 94 0 10 chr4 52720908 52721005 -102909115 + B1_Mus2 SINE Alu 40 135 -12 2 987 336 48 0 0 chr4 52721005 52721047 -102909073 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 987 3451 37 0 0 chr4 52721581 52721991 -102908129 + L1Md_T LINE L1 6173 6582 0 2 987 220 337 0 44 chr4 52722010 52722100 -102908020 + L2b LINE L2 3290 3375 0 3 987 277 250 131 0 chr4 52722845 52722929 -102907191 - MER5A1 DNA MER1_type -36 130 36 3 987 321 89 0 0 chr4 52723112 52723157 -102906963 + (TTAG)n Simple_repeat Simple_repeat 4 48 0 3 987 934 9 17 0 chr4 52723284 52723399 -102906721 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 987 3922 71 47 24 chr4 52723755 52724303 -102905817 + Lx3_Mus LINE L1 6449 7009 0 3 987 358 295 21 0 chr4 52726040 52726135 -102903985 + PB1D10 SINE Alu 18 114 -3 3 987 492 317 174 38 chr4 52726611 52726799 -102903321 - MLT1D LTR MaLR -53 452 241 3 987 263 67 44 0 chr4 52726799 52726844 -102903276 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 3 987 492 317 174 38 chr4 52726844 52727052 -102903068 - MLT1D LTR MaLR -265 240 2 3 987 344 282 193 28 chr4 52728124 52728336 -102901784 + RLTR19 LTR ERVK 10 256 -243 3 987 307 112 65 33 chr4 52728346 52728438 -102901682 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 3 987 621 232 53 115 chr4 52728441 52728717 -102901403 + RLTR19 LTR ERVK 30 498 -1 3 987 469 235 10 10 chr4 52728718 52728817 -102901303 + PB1D10 SINE Alu 12 110 -7 3 987 687 325 9 46 chr4 52729064 52729280 -102900840 + B4A SINE B4 5 212 -80 3 987 480 35 0 0 chr4 52729902 52729960 -102900160 + (TATG)n Simple_repeat Simple_repeat 3 60 0 3 987 423 304 201 16 chr4 52729970 52730131 -102899989 + B4A SINE B4 2 209 -83 3 987 570 227 147 26 chr4 52730131 52730321 -102899799 + B3 SINE B2 3 215 -1 3 987 423 304 201 16 chr4 52730321 52730403 -102899717 + B4A SINE B4 210 290 -2 3 987 1163 116 0 17 chr4 52730486 52730648 -102899472 + B2_Mm2 SINE B2 1 159 -36 3 987 405 0 0 0 chr4 52730648 52730693 -102899427 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 987 1163 164 69 25 chr4 52730693 52730727 -102899393 + B2_Mm2 SINE B2 160 213 -3 3 987 270 0 0 0 chr4 52730902 52730932 -102899188 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 987 459 336 108 27 chr4 52731826 52732086 -102898034 + LTR41 LTR ERVL 19 299 -469 3 987 62 52 0 0 chr4 52733860 52733957 -102896163 + AT_rich Low_complexity Low_complexity 1 97 0 3 987 466 235 55 64 chr4 52734458 52734676 -102895444 + L1MB2 LINE L1 5956 6171 0 3 987 241 328 24 65 chr4 52735098 52735222 -102894898 - LTR33A LTR ERVL -1 519 401 3 987 324 0 0 0 chr4 52735586 52735622 -102894498 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 987 645 14 0 0 chr4 52736156 52736230 -102893890 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 987 2256 93 8 31 chr4 52736403 52736759 -102893361 - L1_Mus3 LINE L1 -2 6636 6289 3 987 1905 156 79 3 chr4 52737587 52737927 -102892193 + MTC LTR MaLR 3 368 -53 3 987 207 152 21 21 chr4 52738011 52738058 -102892062 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 3 987 351 121 0 0 chr4 52738468 52738526 -102891594 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 987 370 304 29 15 chr4 52740181 52740318 -102889802 - B1F SINE Alu -6 143 5 3 987 22 0 0 0 chr4 52740366 52740388 -102889732 + AT_rich Low_complexity Low_complexity 1 22 0 3 987 387 289 8 38 chr4 52740445 52740463 -102889657 + ID_B1 SINE B4 87 215 -9 3 987 393 257 35 17 chr4 52740463 52740578 -102889542 + B1F SINE Alu 24 140 -9 3 987 288 246 27 14 chr4 52740592 52740666 -102889454 + ID SINE ID 1 75 -149 3 987 271 236 16 1 chr4 52740898 52740975 -102889145 - L1MA4 LINE L1 -7 6293 6207 3 987 698 253 125 49 chr4 52741023 52741351 -102888769 - Charlie7 DNA MER1_type -646 1966 1614 3 987 916 145 14 7 chr4 52741543 52741689 -102888431 - B1_Mur3 SINE Alu -1 148 2 3 987 545 128 31 21 chr4 52741745 52741841 -102888279 - URR1B DNA MER1_type -43 182 86 3 987 407 360 139 7 chr4 52741895 52742183 -102887937 - Charlie7 DNA MER1_type -2265 347 22 3 987 3403 190 156 8 chr4 52742631 52743380 -102886740 + RMER13A LTR ERVK 1 860 0 3 987 225 114 22 22 chr4 52744458 52744503 -102885617 - MamGypLTR1a LTR Gypsy -737 47 3 3 987 331 244 164 9 chr4 52744693 52744809 -102885311 + MIRb SINE MIR 5 138 -130 3 987 294 294 82 92 chr4 52746040 52746321 -102883799 + LTR78 LTR ERV1 624 901 -403 3 987 400 248 131 18 chr4 52746812 52746980 -102883140 - L1MA6 LINE L1 -241 6050 5864 3 987 3746 180 74 40 chr4 52746997 52747836 -102882284 - RMER13B LTR ERVK 0 908 42 3 987 1018 120 17 46 chr4 52747822 52747996 -102882124 - MTB LTR MaLR -227 169 1 3 987 7130 86 29 72 chr4 52747996 52749144 -102880976 - MTB-int LTR MaLR 0 1098 1 3 987 3300 48 2 0 chr4 52749144 52749543 -102880577 - MTB LTR MaLR 0 400 1 3 987 1850 33 12 16 chr4 52749544 52749789 -102880331 - MTA_Mm LTR MaLR -152 244 1 3 987 304 228 18 0 chr4 52749789 52749844 -102880276 - RMER13B LTR ERVK -852 56 1 3 987 761 261 102 46 chr4 52749849 52750368 -102879752 - L1MA6 LINE L1 -456 5844 5297 3 987 555 322 93 65 chr4 52750440 52750719 -102879401 - B4A SINE B4 0 292 6 3 987 358 269 35 14 chr4 52750827 52750970 -102879150 - L1MA6 LINE L1 -67 6233 6088 3 987 288 186 32 75 chr4 52750946 52751039 -102879081 + L1MA6 LINE L1 5864 5952 -348 3 987 271 261 93 25 chr4 52751219 52751380 -102878740 - L1MA6 LINE L1 -839 5304 5133 3 987 816 299 90 38 chr4 52751392 52751461 -102878659 + L1MA9 LINE L1 5726 5788 -524 3 987 345 62 0 0 chr4 52751461 52751509 -102878611 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 987 816 299 90 38 chr4 52751509 52751995 -102878125 + L1MA9 LINE L1 5789 6309 -3 3 987 231 314 0 14 chr4 52752038 52752109 -102878011 + B4 SINE B4 11 80 -212 3 987 616 322 101 37 chr4 52752508 52752885 -102877235 - LTR83 LTR ERVL 0 780 380 3 987 576 267 103 38 chr4 52752922 52753183 -102876937 - LTR83 LTR ERVL -476 304 27 3 987 504 328 52 9 chr4 52753325 52753556 -102876564 - L1MD LINE L1 -2874 3272 3032 3 987 260 246 0 16 chr4 52753558 52753620 -102876500 + CT-rich Low_complexity Low_complexity 4 64 0 3 987 304 285 88 71 chr4 52753815 52754024 -102876096 - L1MB3 LINE L1 -131 6052 5832 3 987 879 185 0 0 chr4 52754024 52754170 -102875950 + B1_Mus1 SINE Alu 1 146 -2 3 987 304 285 88 71 chr4 52754170 52754243 -102875877 - L1MB3 LINE L1 -352 5831 5765 3 987 1509 228 38 22 chr4 52754249 52754653 -102875467 - RLTR20A LTR ERVK 0 541 139 3 987 6619 95 8 4 chr4 52754653 52755919 -102874201 - L1_Mus4 LINE L1 -99 6537 5266 3 987 5640 152 42 12 chr4 52755919 52757018 -102873102 + L1_Mm LINE L1 4187 5318 -565 3 987 1405 162 4 20 chr4 52757018 52757263 -102872857 - RLTR20A LTR ERVK -300 241 1 3 987 619 332 63 0 chr4 52757269 52757618 -102872502 - L1MB3 LINE L1 -465 5718 5348 3 987 376 332 101 13 chr4 52757666 52758062 -102872058 - L1MD LINE L1 -3263 2883 2453 3 987 24 32 0 0 chr4 52758464 52758495 -102871625 + AT_rich Low_complexity Low_complexity 1 31 0 3 987 1759 213 51 0 chr4 52758570 52758965 -102871155 + Lx5 LINE L1 6634 7048 -2 3 987 485 321 120 46 chr4 52759446 52759730 -102870390 - MLT1A LTR MaLR -54 320 16 3 987 23 33 0 0 chr4 52762039 52762069 -102868051 + AT_rich Low_complexity Low_complexity 1 30 0 3 987 1983 143 82 27 chr4 52762132 52762498 -102867622 + ORR1B1 LTR MaLR 1 386 -8 3 987 814 66 25 0 chr4 52762606 52762727 -102867393 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 3 987 1299 31 6 0 chr4 52762727 52762886 -102867234 - B2_Mm1a SINE B2 -33 160 1 3 987 257 89 0 22 chr4 52763695 52763741 -102866379 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 3 987 533 224 38 81 chr4 52764142 52764302 -102865818 - B3A SINE B2 0 198 46 3 987 387 0 0 0 chr4 52764669 52764712 -102865408 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 987 495 0 0 0 chr4 52765675 52765730 -102864390 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 987 23 78 0 0 chr4 52768066 52768117 -102862003 + AT_rich Low_complexity Low_complexity 1 51 0 3 987 21 36 0 0 chr4 52768251 52768279 -102861841 + AT_rich Low_complexity Low_complexity 1 28 0 3 987 28 29 0 0 chr4 52768780 52768815 -102861305 + AT_rich Low_complexity Low_complexity 1 35 0 3 987 656 315 53 81 chr4 52769270 52769629 -102860491 + ORR1E LTR MaLR 6 354 -5 3 987 23 0 0 0 chr4 52769850 52769873 -102860247 + AT_rich Low_complexity Low_complexity 1 23 0 3 987 1330 95 5 10 chr4 52769932 52770124 -102859996 - B2_Mm2 SINE B2 -2 193 3 3 987 422 244 153 68 chr4 52770150 52770489 -102859631 + RLTR9A LTR ERVK 1 368 0 3 987 369 225 141 47 chr4 52771248 52771366 -102858754 - L1M5 LINE L1 -698 5481 5349 3 987 2915 74 20 5 chr4 52771366 52771760 -102858360 + MTB LTR MaLR 1 400 0 3 987 369 225 141 47 chr4 52771760 52771790 -102858330 - L1M5 LINE L1 -831 5348 5319 3 987 699 285 20 35 chr4 52772114 52772314 -102857806 + B3A SINE B2 1 197 -1 3 987 520 209 14 14 chr4 52772357 52772498 -102857622 + (TATATG)n Simple_repeat Simple_repeat 6 146 0 3 987 298 325 0 12 chr4 52772527 52772611 -102857509 - B4A SINE B4 0 292 210 3 987 241 89 22 22 chr4 52772661 52772707 -102857413 + (TCTCCC)n Simple_repeat Simple_repeat 6 51 0 3 987 347 250 144 17 chr4 52772726 52772844 -102857276 - B4A SINE B4 -137 155 23 3 987 494 339 59 70 chr4 52772868 52773255 -102856865 - L1M5 LINE L1 -1353 4793 4411 3 987 230 116 23 0 chr4 52773469 52773512 -102856608 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 987 303 161 0 18 chr4 52773591 52773648 -102856472 - HAL1-3A_ME LINE L1 -831 2027 1972 3 987 351 0 0 0 chr4 52774218 52774257 -102855863 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 987 226 247 147 21 chr4 52774375 52774409 -102855711 - B3 SINE B2 0 216 172 3 987 597 61 0 0 chr4 52774409 52774491 -102855629 + (TATG)n Simple_repeat Simple_repeat 3 84 0 3 987 226 247 147 21 chr4 52774491 52774551 -102855569 - B3 SINE B2 -45 171 111 3 987 308 83 21 0 chr4 52775811 52775859 -102854261 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 987 498 356 73 5 chr4 52775942 52776134 -102853986 - B4A SINE B4 -76 216 12 3 987 411 68 0 0 chr4 52776733 52776792 -102853328 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 987 301 0 0 109 chr4 52777248 52777303 -102852817 + (T)n Simple_repeat Simple_repeat 1 49 0 3 987 1262 27 0 0 chr4 52777303 52777450 -102852670 - B1_Mm SINE Alu 0 147 1 3 987 186 43 0 0 chr4 52779092 52779115 -102851005 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 987 22 35 0 0 chr4 52779922 52779951 -102850169 + AT_rich Low_complexity Low_complexity 1 29 0 3 987 194 300 83 0 chr4 52780254 52780314 -102849806 - L2 LINE L2 -685 2734 2670 3 987 1250 106 22 0 chr4 52780398 52780578 -102849542 + B2_Mm2 SINE B2 4 187 -8 3 987 3827 201 118 48 chr4 52780607 52780981 -102849139 + RMER12 LTR ERVK 1 380 -942 3 987 1185 101 50 6 chr4 52780981 52781160 -102848960 + B2_Mm2 SINE B2 2 188 -7 4 987 3827 201 118 48 chr4 52781160 52781535 -102848585 + RMER12 LTR ERVK 381 764 -558 3 987 1331 48 0 13 chr4 52781535 52781768 -102848352 + (TCCA)n Simple_repeat Simple_repeat 1 229 0 4 987 3827 220 115 52 chr4 52781768 52782233 -102847887 + RMER12 LTR ERVK 765 1119 -203 3 987 2474 50 0 0 chr4 52782233 52782534 -102847586 + L1_Mus1 LINE L1 6267 6567 0 4 987 1059 52 0 0 chr4 52782541 52782675 -102847445 + (GAA)n Simple_repeat Simple_repeat 2 135 0 4 987 390 21 0 0 chr4 52782829 52782876 -102847244 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 987 2344 110 74 0 chr4 52784274 52784639 -102845481 + Lx2 LINE L1 6605 6996 -1 4 987 1472 267 93 47 chr4 52785482 52785582 -102844538 - MER67C LTR ERV1 -51 660 542 4 987 198 0 0 0 chr4 52785582 52785604 -102844516 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 4 987 1472 267 93 47 chr4 52785604 52786084 -102844036 - MER67C LTR ERV1 -170 541 53 4 987 1561 174 31 150 chr4 52786488 52786940 -102843180 - RMER10B LTR ERVL 0 398 1 4 987 3079 157 28 73 chr4 52787329 52787837 -102842283 + RMER19C LTR ERVK 1 492 -119 4 987 2998 41 5 3 chr4 52787837 52788207 -102841913 + L1Md_F3 LINE L1 6214 6584 0 4 987 3079 157 28 73 chr4 52788207 52788332 -102841788 + RMER19C LTR ERVK 493 606 -5 4 987 4573 51 0 3 chr4 52788333 52788901 -102841219 + L1Md_F2 LINE L1 6017 6582 0 4 987 391 291 205 0 chr4 52789063 52789214 -102840906 + B3A SINE B2 1 182 -16 4 987 35 54 0 0 chr4 52789241 52789297 -102840823 + AT_rich Low_complexity Low_complexity 1 56 0 4 987 189 0 0 0 chr4 52789335 52789356 -102840764 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 4 987 5180 160 35 43 chr4 52789549 52790568 -102839552 + RLTR21 LTR ERVK 105 1115 -457 4 987 537 179 53 63 chr4 52790649 52790797 -102839323 + RLTR21 LTR ERVK 1287 1449 -123 4 987 1092 330 39 29 chr4 52790801 52791293 -102838827 - Lx8 LINE L1 -649 6824 6328 4 987 1245 25 6 6 chr4 52791909 52792070 -102838050 + L1Md_F2 LINE L1 6412 6572 -10 4 987 631 231 147 14 chr4 52793983 52794194 -102835926 + Lx7 LINE L1 7071 7309 -387 4 987 390 69 0 0 chr4 52794196 52794254 -102835866 + (CTTTG)n Simple_repeat Simple_repeat 2 59 0 4 987 189 0 0 0 chr4 52794589 52794610 -102835510 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 987 22 35 0 0 chr4 52794667 52794696 -102835424 + AT_rich Low_complexity Low_complexity 1 29 0 4 987 2920 157 14 1 chr4 52795094 52795959 -102834161 + L1_Mur2 LINE L1 915 1788 -4089 4 987 6180 172 28 40 chr4 52795950 52796328 -102833792 + L1_Mur2 LINE L1 4276 4656 -1221 4 987 1078 69 21 0 chr4 52796328 52796472 -102833648 - B1_Mus1 SINE Alu 0 148 2 4 987 6180 172 28 40 chr4 52796472 52797663 -102832457 + L1_Mur2 LINE L1 4657 5860 -17 4 987 448 191 67 0 chr4 52797663 52797752 -102832368 - MTC-int LTR MaLR -1091 167 73 4 987 397 208 77 39 chr4 52797767 52797904 -102832216 + ORR1B2 LTR MaLR 1 165 -209 4 987 245 146 21 0 chr4 52797907 52797955 -102832165 + GA-rich Low_complexity Low_complexity 1 49 0 4 987 386 20 20 0 chr4 52798339 52798390 -102831730 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 987 237 372 26 0 chr4 52799115 52799193 -102830927 + ID4 SINE ID 2 81 -2 4 987 714 196 144 6 chr4 52799504 52799684 -102830436 + B3 SINE B2 2 206 -10 4 987 215 93 44 44 chr4 52799970 52800015 -102830105 + (TTAAA)n Simple_repeat Simple_repeat 5 49 0 4 987 258 232 0 40 chr4 52800356 52800455 -102829665 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 987 30 0 0 0 chr4 52801297 52801327 -102828793 + AT_rich Low_complexity Low_complexity 1 30 0 4 987 255 103 0 0 chr4 52801745 52801784 -102828336 + (CAGAGA)n Simple_repeat Simple_repeat 5 43 0 4 987 25 31 0 0 chr4 52802036 52802068 -102828052 + AT_rich Low_complexity Low_complexity 1 32 0 4 987 232 290 0 31 chr4 52802246 52802310 -102827810 - MTE2a LTR MaLR -40 339 278 4 987 338 370 67 15 chr4 52803479 52803674 -102826446 + MIRc SINE MIR 14 218 -50 4 987 361 280 44 101 chr4 52804290 52804449 -102825671 - MER5B DNA MER1_type -3 175 26 4 987 192 40 0 0 chr4 52804495 52804520 -102825600 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4 987 1232 109 11 0 chr4 52804536 52804711 -102825409 + B2_Mm1t SINE B2 3 179 -14 4 987 330 94 346 19 chr4 52804778 52804885 -102825235 + B2_Mm2 SINE B2 48 189 -6 4 987 1142 120 17 0 chr4 52805093 52805268 -102824852 - B2_Mm1t SINE B2 -14 179 2 4 987 248 0 0 30 chr4 52805283 52805316 -102824804 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 987 195 208 20 20 chr4 52805379 52805428 -102824692 + MER5B DNA MER1_type 31 79 -99 4 987 1113 133 28 6 chr4 52807446 52807627 -102822493 + B2_Mm2 SINE B2 2 186 -9 4 987 1010 179 114 5 chr4 52807627 52807829 -102822291 + URR1A DNA MER1_type 3 226 0 4 987 236 156 0 0 chr4 52810892 52810937 -102819183 + Lx2A LINE L1 6956 7000 -8 4 987 218 336 49 25 chr4 52811719 52811841 -102818279 - MIR SINE MIR -133 129 5 4 987 1863 196 146 9 chr4 52813125 52813607 -102816513 + RMER19C LTR ERVK 33 611 0 4 987 7290 79 3 5 chr4 52814712 52816323 -102813797 - L1_Mus1 LINE L1 0 6567 4961 4 987 258 328 0 0 chr4 52816430 52816525 -102813595 + G-rich Low_complexity Low_complexity 1 95 0 4 987 960 88 0 0 chr4 52816525 52816661 -102813459 + (GGAA)n Simple_repeat Simple_repeat 1 136 0 4 987 444 19 0 0 chr4 52817958 52818011 -102812109 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 987 980 172 97 15 chr4 52818845 52819040 -102811080 + B3 SINE B2 1 211 -5 4 123 21 57 0 0 chr4 52822005 52822040 -102808080 + AT_rich Low_complexity Low_complexity 1 35 0 4 988 998 143 0 6 chr4 52823380 52823556 -102806564 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 4 988 180 219 0 0 chr4 52823798 52823839 -102806281 + GA-rich Low_complexity Low_complexity 4 44 0 4 988 33 56 0 0 chr4 52823839 52823893 -102806227 + AT_rich Low_complexity Low_complexity 1 54 0 4 988 1060 289 88 44 chr4 52824016 52824446 -102805674 + MLT1C LTR MaLR 19 467 0 4 988 189 0 0 0 chr4 52824904 52824925 -102805195 + (A)n Simple_repeat Simple_repeat 1 21 0 4 988 3533 125 13 8 chr4 52825032 52825646 -102804474 - L1_Mur2 LINE L1 -2908 2969 2353 4 988 4097 197 5 0 chr4 52825641 52826382 -102803738 + Lx5 LINE L1 6227 6971 -79 4 988 216 0 0 0 chr4 52826403 52826427 -102803693 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 4 988 1086 123 0 0 chr4 52826427 52826598 -102803522 + (GGGA)n Simple_repeat Simple_repeat 3 173 0 4 988 3455 242 72 47 chr4 52826633 52827712 -102802408 + Lx9 LINE L1 6344 7449 -195 4 988 486 0 0 0 chr4 52827719 52827773 -102802347 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 988 186 133 0 0 chr4 52828114 52828144 -102801976 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 4 988 518 305 75 95 chr4 52828326 52828479 -102801641 + MLT1B LTR MaLR 39 199 -191 4 988 189 0 0 0 chr4 52828479 52828500 -102801620 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 4 988 518 305 75 95 chr4 52828500 52828705 -102801415 + MLT1B LTR MaLR 200 390 0 4 988 555 135 0 0 chr4 52830328 52830424 -102799696 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 988 220 0 0 79 chr4 52830972 52831010 -102799110 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 988 485 313 56 75 chr4 52831013 52831334 -102798786 - MTEa LTR MaLR -7 372 58 4 988 2249 133 52 5 chr4 52831625 52831994 -102798126 - ORR1B1 LTR MaLR -8 386 1 4 988 235 297 59 0 chr4 52832571 52832689 -102797431 + L1M5 LINE L1 4085 4209 -1937 4 988 306 0 0 0 chr4 52832718 52832752 -102797368 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 988 303 28 0 0 chr4 52832752 52832787 -102797333 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 988 342 0 0 0 chr4 52832788 52832826 -102797294 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 988 495 352 117 48 chr4 52832910 52833172 -102796948 + L1M5 LINE L1 4342 4614 -1532 4 988 424 292 55 55 chr4 52833172 52833317 -102796803 + B1F1 SINE Alu 4 148 -1 4 988 495 352 117 48 chr4 52833317 52833762 -102796358 + L1M5 LINE L1 4615 5098 -1048 4 988 403 260 108 68 chr4 52833764 52834009 -102796111 - MTEb LTR MaLR 0 379 100 4 988 372 164 0 0 chr4 52834196 52834263 -102795857 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 988 234 140 100 0 chr4 52834263 52834313 -102795807 + Lx8 LINE L1 7285 7339 -134 4 988 1228 305 29 8 chr4 52835213 52835564 -102794556 + Lx7 LINE L1 6341 6698 -998 4 988 1543 237 45 98 chr4 52835545 52836097 -102794023 + Lx7 LINE L1 6842 7364 -332 4 988 215 56 56 0 chr4 52836161 52836197 -102793923 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 4 988 243 0 0 0 chr4 52836209 52836236 -102793884 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 988 225 295 22 33 chr4 52840380 52840399 -102789721 + B4 SINE B4 71 88 -204 4 988 280 236 184 16 chr4 52840399 52840524 -102789596 + PB1D10 SINE Alu 3 148 0 4 988 260 347 0 20 chr4 52840526 52840626 -102789494 + GA-rich Low_complexity Low_complexity 4 101 0 4 988 345 217 0 0 chr4 52841590 52841673 -102788447 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 988 1153 281 11 12 chr4 52841817 52842170 -102787950 - Lx8 LINE L1 -1548 5925 5537 4 988 1017 195 43 19 chr4 52842175 52842384 -102787736 - B3 SINE B2 0 216 3 4 988 965 260 15 19 chr4 52842387 52842650 -102787470 - Lx8 LINE L1 -752 5095 4834 4 988 238 371 153 0 chr4 52842657 52842905 -102787215 - L2 LINE L2 -904 2515 2230 4 988 829 182 172 0 chr4 52843085 52843277 -102786843 + URR1B DNA MER1_type 1 225 0 4 988 206 118 0 0 chr4 52844042 52844076 -102786044 + (A)n Simple_repeat Simple_repeat 1 34 0 4 988 322 411 93 20 chr4 52844349 52844758 -102785362 - LTR16A LTR ERVL -12 439 1 4 988 232 345 11 44 chr4 52845086 52845177 -102784943 + PB1D10 SINE Alu 29 116 -1 4 988 314 219 11 29 chr4 52845699 52845713 -102784407 + (TA)n Simple_repeat Simple_repeat 1 14 0 4 988 306 73 0 0 chr4 52845713 52845754 -102784366 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 988 314 219 11 29 chr4 52845754 52845913 -102784207 + (TA)n Simple_repeat Simple_repeat 1 156 0 4 988 3133 37 42 51 chr4 52846571 52847001 -102783119 + ETnERV-int LTR ERVK 2889 3314 0 4 988 1896 105 28 22 chr4 52847001 52847321 -102782799 + RLTRETN_Mm LTR ERVK 1 322 0 4 988 902 325 55 3 chr4 52847419 52847731 -102782389 - MLT2D LTR ERVL -84 330 3 4 988 2711 244 63 6 chr4 52847796 52848817 -102781303 - Lx6 LINE L1 -19 7441 6209 5 988 2132 173 11 14 chr4 52848829 52849199 -102780921 + ORR1B1 LTR MaLR 26 394 0 5 988 3186 200 48 139 chr4 52849204 52850047 -102780073 - Lx6 LINE L1 -1253 6207 5347 5 988 1094 236 86 18 chr4 52850047 52850357 -102779763 + RMER20B LTR ERVK 192 514 -113 5 988 3186 200 48 139 chr4 52850357 52850425 -102779695 - Lx6 LINE L1 -1253 5346 5276 5 988 2619 149 29 5 chr4 52850425 52850871 -102779249 - Lx2B LINE L1 -15 6985 6529 5 988 3331 173 17 26 chr4 52850871 52851568 -102778552 - Lx6 LINE L1 -587 5293 4605 5 988 4297 187 23 15 chr4 52851578 52851691 -102778429 - Lx6 LINE L1 -3716 2164 2055 5 988 459 0 0 0 chr4 52851691 52851742 -102778378 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 988 4297 225 67 19 chr4 52851742 52853608 -102776512 - Lx6 LINE L1 -3826 2054 86 5 988 293 354 60 30 chr4 52853899 52854033 -102776087 - Cheshire DNA MER1_type -2281 139 2 5 988 246 357 43 43 chr4 52854527 52854735 -102775385 - MIRb SINE MIR -41 227 20 5 988 1022 97 14 7 chr4 52855500 52855646 -102774474 + B1_Mm SINE Alu 1 147 0 5 988 216 0 0 0 chr4 52855648 52855672 -102774448 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 5 988 4636 160 8 4 chr4 52855905 52856726 -102773394 + Lx3C LINE L1 3647 4471 -1406 5 988 7631 60 12 18 chr4 52856726 52857830 -102772290 + L1_Mus1 LINE L1 5474 6567 0 5 988 7359 144 71 23 chr4 52857825 52858199 -102771921 + Lx3C LINE L1 4451 4854 -1032 5 988 2440 121 53 46 chr4 52858199 52858616 -102771504 - RLTR9B2 LTR ERVK 0 420 1 5 988 7359 151 50 25 chr4 52858616 52860295 -102769825 + Lx3C LINE L1 4855 6547 -429 5 988 22 0 0 0 chr4 52861829 52861851 -102768269 + AT_rich Low_complexity Low_complexity 1 22 0 5 988 354 98 0 0 chr4 52863335 52863386 -102766734 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 988 1846 240 37 8 chr4 52863449 52863941 -102766179 - RCHARR1 DNA MER1_type -114 860 355 5 988 3296 172 141 12 chr4 52864166 52864921 -102765199 - RMER13A LTR ERVK 0 860 9 5 988 566 266 137 17 chr4 52865234 52865467 -102764653 - RCHARR1 DNA MER1_type -708 266 6 5 988 311 253 79 22 chr4 52865645 52865734 -102764386 + RSINE1 SINE B4 43 136 -29 5 988 851 0 10 0 chr4 52865751 52865850 -102764270 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 5 988 2902 223 24 23 chr4 52867209 52867910 -102762210 - Lx9 LINE L1 -1 7643 6942 5 988 845 89 8 0 chr4 52867910 52868034 -102762086 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 988 297 0 0 0 chr4 52868034 52868066 -102762054 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 988 1295 209 28 0 chr4 52868066 52868315 -102761805 - Lx9 LINE L1 -889 6755 6500 5 988 189 107 0 0 chr4 52869775 52869803 -102760317 + (A)n Simple_repeat Simple_repeat 1 28 0 5 988 737 248 52 7 chr4 52872442 52872596 -102757524 + B3A SINE B2 2 162 -36 5 988 324 0 0 0 chr4 52872601 52872637 -102757483 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 988 1029 79 0 0 chr4 52873002 52873142 -102756978 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 5 988 297 0 0 0 chr4 52873142 52873175 -102756945 + (TGGG)n Simple_repeat Simple_repeat 3 35 0 5 988 1122 49 12 6 chr4 52873175 52873338 -102756782 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 5 988 28 0 0 0 chr4 52873575 52873603 -102756517 + AT_rich Low_complexity Low_complexity 1 28 0 5 988 9378 106 27 11 chr4 52874142 52875170 -102754950 - Lx4A LINE L1 -1 7057 6004 5 988 3249 48 2 2 chr4 52875170 52875566 -102754554 + MTA_Mm LTR MaLR 1 396 0 5 988 9378 106 27 11 chr4 52875566 52875928 -102754192 - Lx4A LINE L1 -1055 6003 5644 5 988 21 36 0 0 chr4 52875992 52876020 -102754100 + AT_rich Low_complexity Low_complexity 1 28 0 5 988 2359 233 80 26 chr4 52877202 52877776 -102752344 + Lx6 LINE L1 6837 7441 -19 5 988 216 0 0 0 chr4 52877780 52877804 -102752316 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5 988 1620 275 69 21 chr4 52877804 52878384 -102751736 - Lx6 LINE L1 -26 7434 6456 5 988 322 207 59 132 chr4 52878461 52878597 -102751523 - Lx5 LINE L1 -574 6886 6820 5 988 894 274 27 19 chr4 52878630 52878891 -102751229 - Lx5 LINE L1 -688 6362 6100 5 988 475 336 36 39 chr4 52879445 52879885 -102750235 - L1M3 LINE L1 -2565 3575 3137 5 988 253 229 0 12 chr4 52879891 52879975 -102750145 + L1MC LINE L1 3679 3761 -2385 5 988 1352 97 9 31 chr4 52880474 52880697 -102749423 - L1_Mus3 LINE L1 -2 6636 6419 5 988 401 277 11 0 chr4 52880880 52880974 -102749146 + ORR1C2 LTR MaLR 1 95 -279 5 988 562 229 23 0 chr4 52881001 52881132 -102748988 + ORR1C2 LTR MaLR 251 384 0 5 988 360 143 14 54 chr4 52881518 52881592 -102748528 - ORR1D1 LTR MaLR -119 255 185 5 988 273 29 0 0 chr4 52883502 52883536 -102746584 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 988 374 219 0 14 chr4 52883655 52883729 -102746391 + RSINE1 SINE B4 55 127 -38 5 988 425 62 0 30 chr4 52883742 52883808 -102746312 + (CATA)n Simple_repeat Simple_repeat 4 67 0 5 988 301 292 58 0 chr4 52884783 52884903 -102745217 - L1MA9 LINE L1 -242 6070 5944 5 988 699 232 42 0 chr4 52885029 52885171 -102744949 + B1_Mur4 SINE Alu 3 150 0 5 988 400 244 36 90 chr4 52886888 52887055 -102743065 - RLTR9B LTR ERVK 0 437 280 5 988 3102 37 0 0 chr4 52887401 52887776 -102742344 + L1_Mus3 LINE L1 5674 6048 -590 5 988 252 253 211 0 chr4 52889227 52889322 -102740798 - B3 SINE B2 0 216 102 5 988 514 252 54 88 chr4 52889305 52889453 -102740667 + B3A SINE B2 42 184 -14 5 988 238 272 61 12 chr4 52889622 52889704 -102740416 + MER5A1 DNA MER1_type 17 102 -64 5 988 1061 224 158 6 chr4 52889865 52890188 -102739932 - ORR1D1 LTR MaLR -2 372 1 5 988 189 306 68 27 chr4 52891053 52891201 -102738919 + L2c LINE L2 3130 3283 -104 5 988 3138 51 5 17 chr4 52892675 52893077 -102737043 + L1_Mus1 LINE L1 6171 6567 0 5 988 1265 64 6 0 chr4 52893109 52893281 -102736839 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 5 988 2704 153 69 60 chr4 52893402 52893870 -102736250 + RLTR20A LTR ERVK 1 451 -90 5 988 534 129 0 0 chr4 52893870 52893955 -102736165 + (CGTG)n Simple_repeat Simple_repeat 2 86 0 5 988 2704 153 69 60 chr4 52893955 52894022 -102736098 + RLTR20A LTR ERVK 452 541 0 5 988 449 262 47 60 chr4 52894093 52894243 -102735877 - B3 SINE B2 -54 162 15 5 988 438 20 0 0 chr4 52894252 52894303 -102735817 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 5 988 432 97 0 0 chr4 52894304 52894366 -102735754 + (TCTCC)n Simple_repeat Simple_repeat 5 66 0 5 988 608 234 27 27 chr4 52894368 52894517 -102735603 - B1_Mur2 SINE Alu 0 149 1 5 988 270 0 0 0 chr4 52894530 52894560 -102735560 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 988 2243 79 0 0 chr4 52895050 52895340 -102734780 - L1_Mus1 LINE L1 0 6567 6278 5 988 326 0 18 53 chr4 52895345 52895402 -102734718 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 5 988 435 358 149 19 chr4 52895693 52896157 -102733963 + L1MC4 LINE L1 7344 7867 -175 5 988 965 258 47 10 chr4 52896205 52896506 -102733614 - Lx8 LINE L1 -822 6651 6340 5 988 1093 115 0 0 chr4 52896707 52896855 -102733265 + B1_Mus1 SINE Alu 1 148 0 5 988 1190 186 5 0 chr4 52897046 52897261 -102732859 - RLTR25A LTR ERVK -683 420 205 5 988 332 105 69 17 chr4 52897385 52897443 -102732677 - HAL1-3A_ME LINE L1 -822 2036 1976 5 988 276 243 13 24 chr4 52897505 52897597 -102732523 - MLT1I LTR MaLR -29 419 310 5 988 509 0 16 0 chr4 52898071 52898132 -102731988 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 5 988 216 0 0 0 chr4 52898132 52898156 -102731964 + (ACTG)n Simple_repeat Simple_repeat 3 26 0 5 988 210 302 32 0 chr4 52899177 52899240 -102730880 + (CATA)n Simple_repeat Simple_repeat 3 67 0 5 988 1218 54 0 0 chr4 52899605 52899752 -102730368 + B1_Mus2 SINE Alu 1 147 0 5 988 561 56 11 33 chr4 52899752 52899816 -102730304 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 5 988 1424 39 6 0 chr4 52899816 52899995 -102730125 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 988 561 56 11 33 chr4 52899995 52900022 -102730098 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 5 988 2889 11 54 8 chr4 52900094 52900445 -102729675 - IAPLTR1_Mm LTR ERVK 0 367 1 5 988 6566 33 4 1 chr4 52900445 52901254 -102728866 - IAPEz-int LTR ERVK 0 6481 5671 5 988 20073 16 0 0 chr4 52901247 52903592 -102726528 - IAPEz-int LTR ERVK -927 5554 3209 5 988 5509 116 117 91 chr4 52903590 52904863 -102725257 - IAPEz-int LTR ERVK -5168 1313 8 5 988 2889 11 54 8 chr4 52904863 52905214 -102724906 - IAPLTR1_Mm LTR ERVK 0 367 1 5 988 22 0 0 0 chr4 52905250 52905272 -102724848 + AT_rich Low_complexity Low_complexity 1 22 0 5 988 444 104 0 0 chr4 52906569 52906636 -102723484 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 988 189 0 0 0 chr4 52906697 52906718 -102723402 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 988 850 291 86 4 chr4 52906767 52907046 -102723074 + MTD LTR MaLR 10 311 -108 5 988 5075 106 22 11 chr4 52907070 52907812 -102722308 - Lx LINE L1 -3 6651 5902 5 988 3716 138 15 0 chr4 52907812 52908429 -102721691 + Lx LINE L1 5256 5881 -2 5 988 336 243 107 0 chr4 52908451 52908554 -102721566 + MTD LTR MaLR 300 413 -6 5 988 2538 299 33 25 chr4 52909056 52910002 -102720118 + Lx9 LINE L1 6480 7432 -212 5 988 186 43 0 0 chr4 52910019 52910042 -102720078 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 988 963 303 14 39 chr4 52910207 52910492 -102719628 - B4A SINE B4 -12 280 3 5 988 287 307 18 10 chr4 52910639 52910782 -102719338 - L1M2 LINE L1 -527 5764 5621 5 988 21 0 0 0 chr4 52911012 52911033 -102719087 + AT_rich Low_complexity Low_complexity 1 21 0 5 988 3334 201 78 80 chr4 52911171 52912219 -102717901 - Lx7 LINE L1 0 7696 6651 5 988 951 147 70 11 chr4 52912216 52912402 -102717718 + L1_Mur2 LINE L1 4777 4973 -904 5 988 404 198 81 127 chr4 52912865 52913062 -102717058 + RLTR15 LTR ERVK 1 188 -171 5 988 273 292 61 78 chr4 52913058 52913288 -102716832 + RLTR15 LTR ERVK 132 357 -2 5 988 3169 64 21 19 chr4 52914071 52914503 -102715617 + L1_Mus1 LINE L1 6135 6567 0 5 988 921 217 78 48 chr4 52916487 52916758 -102713362 + ORR1C2 LTR MaLR 106 384 0 5 988 323 239 53 0 chr4 52918394 52918507 -102711613 - L1M2 LINE L1 -509 5788 5670 5 988 594 286 19 6 chr4 52919500 52919662 -102710458 + Lx5 LINE L1 6886 7049 -1 5 988 266 0 29 0 chr4 52919848 52919882 -102710238 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 988 378 255 73 145 chr4 52919895 52920074 -102710046 - MTE2a LTR MaLR -85 294 129 5 988 228 385 0 0 chr4 52920486 52920582 -102709538 + MIRb SINE MIR 111 206 -62 5 988 4264 170 20 29 chr4 52921073 52921865 -102708255 - Lx5 LINE L1 0 7050 6266 5 988 317 302 98 5 chr4 52922100 52922303 -102707817 - L1MEe LINE L1 -3704 1150 929 5 988 656 252 26 13 chr4 52924786 52924939 -102705181 + RMER13A LTR ERVK 2 156 -704 6 988 299 229 155 117 chr4 52925459 52925672 -102704448 + RMER17A-int LTR ERVK 1084 1304 -424 6 988 2343 238 112 82 chr4 52925972 52926760 -102703360 + RMER13A LTR ERVK 1 811 -49 6 988 206 133 76 51 chr4 52926828 52926871 -102703249 + T-rich Low_complexity Low_complexity 36 84 0 6 988 1189 62 0 0 chr4 52926871 52927017 -102703103 - B1_Mm SINE Alu 0 147 2 6 988 206 133 76 51 chr4 52927017 52927052 -102703068 + T-rich Low_complexity Low_complexity 4 35 0 6 988 222 239 0 0 chr4 52927139 52927185 -102702935 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 6 988 279 0 0 0 chr4 52927385 52927416 -102702704 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 988 285 29 0 0 chr4 52927547 52927581 -102702539 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 6 988 396 338 42 54 chr4 52927893 52928027 -102702093 + RSINE1 SINE B4 2 141 -24 6 988 195 42 0 0 chr4 52928027 52928051 -102702069 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 988 396 338 42 54 chr4 52928051 52928082 -102702038 + RSINE1 SINE B4 142 165 0 6 988 237 108 0 0 chr4 52928159 52928196 -102701924 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 988 1121 147 21 16 chr4 52929184 52929371 -102700749 + URR1A DNA MER1_type 39 226 0 6 988 450 254 67 42 chr4 52929371 52929412 -102700708 - CYRA11_Mm Unknown Y-chromosome -449 168 123 6 988 2288 66 7 3 chr4 52932951 52933254 -102696866 - L1_Mus2 LINE L1 0 6566 6263 6 988 266 0 29 0 chr4 52933646 52933680 -102696440 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 988 1150 61 7 0 chr4 52933694 52933841 -102696279 - B1_Mus1 SINE Alu 0 148 1 6 988 24 0 0 0 chr4 52935102 52935126 -102694994 + AT_rich Low_complexity Low_complexity 1 24 0 6 988 1765 63 66 4 chr4 52935774 52936030 -102694090 + RLTR27 LTR ERVK 1 272 -37 6 988 382 298 9 37 chr4 52936032 52936140 -102693980 - RSINE1 SINE B4 -58 107 3 6 988 289 292 173 14 chr4 52936441 52936580 -102693540 - Lx8 LINE L1 -149 7324 7164 6 988 351 0 0 0 chr4 52936666 52936705 -102693415 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 988 342 333 8 25 chr4 52936705 52936825 -102693295 - RSINE1 SINE B4 -44 121 4 6 988 301 282 0 0 chr4 52936880 52936965 -102693155 + L1M2 LINE L1 3565 3649 -2491 6 988 22 35 0 0 chr4 52937521 52937550 -102692570 + AT_rich Low_complexity Low_complexity 1 29 0 6 988 348 350 98 24 chr4 52937766 52938053 -102692067 - L1MEg LINE L1 -5075 1009 702 6 988 240 309 62 62 chr4 52938092 52938254 -102691866 - URR1A DNA MER1_type -60 166 5 6 988 776 144 28 14 chr4 52938103 52938244 -102691876 + URR1B DNA MER1_type 83 225 0 6 988 345 314 107 9 chr4 52938301 52938516 -102691604 - L1MEg LINE L1 -5447 637 402 6 988 21 0 0 0 chr4 52938585 52938606 -102691514 + AT_rich Low_complexity Low_complexity 1 21 0 6 988 21 36 0 0 chr4 52938950 52938978 -102691142 + AT_rich Low_complexity Low_complexity 1 28 0 6 988 346 300 80 0 chr4 52939233 52939383 -102690737 + L1M2 LINE L1 4387 4548 -1595 6 988 746 245 124 5 chr4 52940268 52940461 -102689659 + B3 SINE B2 1 216 0 6 988 552 230 4 170 chr4 52940727 52940829 -102689291 + B3A SINE B2 1 80 -118 6 988 1237 34 0 0 chr4 52940829 52940976 -102689144 - B1_Mus1 SINE Alu 0 148 2 6 988 552 230 4 170 chr4 52940976 52941103 -102689017 + B3A SINE B2 81 192 -6 6 988 402 21 0 0 chr4 52941718 52941765 -102688355 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 6 988 500 149 11 4 chr4 52942076 52942180 -102687940 - L1_Mur3 LINE L1 -430 5453 5347 6 988 25 31 0 0 chr4 52942274 52942306 -102687814 + AT_rich Low_complexity Low_complexity 1 32 0 6 988 335 290 149 46 chr4 52942950 52943145 -102686975 + L2b LINE L2 2930 3144 -231 6 988 766 211 7 0 chr4 52943319 52943466 -102686654 + B1_Mur2 SINE Alu 2 149 0 6 988 1525 218 53 120 chr4 52943480 52944064 -102686056 + Lx7 LINE L1 7131 7675 -21 6 988 2139 65 3 55 chr4 52944829 52945160 -102684960 + L1_Mus1 LINE L1 6269 6567 0 6 988 648 139 0 0 chr4 52946196 52946340 -102683780 + (GA)n Simple_repeat Simple_repeat 1 144 0 6 988 235 279 146 73 chr4 52947495 52947646 -102682474 - RSINE1 SINE B4 0 165 4 6 988 21 0 0 0 chr4 52948046 52948067 -102682053 + AT_rich Low_complexity Low_complexity 1 21 0 6 988 210 311 11 11 chr4 52949373 52949464 -102680656 + GA-rich Low_complexity Low_complexity 2 92 0 6 988 1416 40 80 0 chr4 52949933 52949948 -102680172 - B2_Mm1t SINE B2 -3 190 176 6 988 279 0 0 0 chr4 52949948 52949979 -102680141 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 988 1416 40 80 0 chr4 52949979 52950139 -102679981 - B2_Mm1t SINE B2 -18 175 2 6 988 498 323 143 25 chr4 52950234 52950959 -102679161 - L1ME1 LINE L1 -89 6090 5273 6 988 267 79 0 0 chr4 52950959 52950997 -102679123 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 988 555 16 0 0 chr4 52950998 52951062 -102679058 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 6 988 252 0 0 0 chr4 52951394 52951422 -102678698 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 988 25 0 0 0 chr4 52952929 52952954 -102677166 + AT_rich Low_complexity Low_complexity 1 25 0 6 989 589 103 0 41 chr4 52953717 52953839 -102676281 + (TTCTC)n Simple_repeat Simple_repeat 5 121 0 6 989 249 208 0 0 chr4 52953841 52953894 -102676226 + CT-rich Low_complexity Low_complexity 1 53 0 6 989 24 0 0 0 chr4 52953913 52953937 -102676183 + AT_rich Low_complexity Low_complexity 1 24 0 6 989 765 185 104 50 chr4 52954731 52954913 -102675207 + B3A SINE B2 1 192 -6 6 989 816 39 0 0 chr4 52955335 52955439 -102674681 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 989 30 0 0 0 chr4 52955538 52955568 -102674552 + AT_rich Low_complexity Low_complexity 1 30 0 6 989 1579 176 79 0 chr4 52955833 52956151 -102673969 + Lx5 LINE L1 6708 7050 0 6 989 262 286 9 79 chr4 52957989 52958103 -102672017 - MER2 DNA MER2_type -6 339 234 6 989 21 71 0 0 chr4 52958104 52958146 -102671974 + AT_rich Low_complexity Low_complexity 1 42 0 6 989 3071 63 2 10 chr4 52958218 52958617 -102671503 - MTA_Mm LTR MaLR 0 396 1 6 989 1171 313 61 26 chr4 52958737 52959245 -102670875 - Lx5 LINE L1 -18 7032 6507 6 989 1044 271 60 6 chr4 52959280 52959669 -102670451 - Lx5 LINE L1 -688 6362 5932 6 989 456 238 53 8 chr4 52959841 52959972 -102670148 - MER2 DNA MER2_type -120 225 89 6 989 317 43 0 21 chr4 52959982 52960030 -102670090 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 989 216 273 0 0 chr4 52960540 52960606 -102669514 + T-rich Low_complexity Low_complexity 3 68 0 6 989 231 111 21 62 chr4 52960607 52960655 -102669465 - PB1D9 SINE Alu 0 120 75 6 989 344 202 105 57 chr4 52960914 52961019 -102669101 + PB1D10 SINE Alu 6 115 -2 6 989 256 274 27 14 chr4 52961022 52961096 -102669024 + GA-rich Low_complexity Low_complexity 2 76 0 6 989 383 321 137 30 chr4 52961101 52961400 -102668720 + L1MEa LINE L1 136 466 -5628 6 989 1413 81 0 5 chr4 52961401 52961587 -102668533 + B2_Mm2 SINE B2 2 186 -9 6 989 253 280 111 20 chr4 52961661 52961814 -102668306 + L1MEa LINE L1 480 646 -5554 6 989 466 189 54 22 chr4 52962117 52962209 -102667911 - MTC LTR MaLR -325 96 2 6 989 1048 98 6 6 chr4 52962239 52962404 -102667716 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 6 989 288 250 98 59 chr4 52962409 52962511 -102667609 - B1F SINE Alu -41 108 3 6 989 477 205 170 0 chr4 52963067 52963179 -102666941 + MT2B LTR ERVL 2 132 -401 6 989 482 279 68 6 chr4 52963247 52963409 -102666711 + MT2B LTR ERVL 383 554 -47 6 989 271 154 0 0 chr4 52963454 52963506 -102666614 + MT2A LTR ERVL 482 533 0 6 989 552 92 11 0 chr4 52963506 52963593 -102666527 + MERVL_2A-int LTR ERVL 2 89 -5672 6 989 3849 246 65 17 chr4 52963615 52964634 -102665486 + ERVL-B4-int LTR ERVL 4124 5191 -523 6 989 1552 122 0 20 chr4 52964651 52964902 -102665218 + ERVL-B4-int LTR ERVL 5365 5610 -151 6 989 677 250 191 33 chr4 52964902 52965175 -102664945 + MT2A LTR ERVL 113 428 -105 6 989 2907 141 4 2 chr4 52965175 52965686 -102664434 + L1_Mur2 LINE L1 1484 1995 -3882 6 989 12695 114 37 4 chr4 52965688 52967027 -102663093 + L1_Mur2 LINE L1 2270 3659 -2218 6 989 432 0 0 0 chr4 52967027 52967075 -102663045 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 989 12695 114 37 4 chr4 52967075 52967912 -102662208 + L1_Mur2 LINE L1 3660 4517 -1360 6 989 4070 168 85 15 chr4 52967913 52968710 -102661410 - RMER13B LTR ERVK 0 908 56 6 989 531 0 0 0 chr4 52968826 52968885 -102661235 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 989 1013 204 10 15 chr4 52968885 52969084 -102661036 + RLTR16 LTR ERVK 4 201 -304 6 989 2652 100 19 2 chr4 52969084 52969504 -102660616 - Lx4A LINE L1 -792 6266 5840 6 989 669 271 92 18 chr4 52969511 52969740 -102660380 + MTEb LTR MaLR 134 379 0 6 989 251 208 56 0 chr4 52972072 52972144 -102657976 - Lx9 LINE L1 0 7644 7569 6 989 4227 78 5 5 chr4 52972401 52972968 -102657152 + RMER2 LTR ERV1 1 567 0 6 989 22 80 0 0 chr4 52973103 52973153 -102656967 + AT_rich Low_complexity Low_complexity 1 50 0 6 989 1479 198 103 3 chr4 52973218 52973558 -102656562 - ORR1D1 LTR MaLR 0 374 1 6 989 1003 256 90 18 chr4 52973809 52974087 -102656033 - MLT1A0 LTR MaLR -15 350 53 6 989 460 292 37 43 chr4 52975266 52975427 -102654693 + RSINE1 SINE B4 4 163 -2 6 989 556 337 50 97 chr4 52975580 52975859 -102654261 + MER21B LTR ERV1 171 436 -427 6 989 762 288 64 0 chr4 52975914 52976147 -102653973 - MER2 DNA MER2_type -1 344 97 6 989 540 278 85 6 chr4 52976178 52976355 -102653765 - B3A SINE B2 -6 192 2 6 989 947 95 0 5 chr4 52976566 52976789 -102653331 + (TC)n Simple_repeat Simple_repeat 1 221 0 6 989 242 310 11 33 chr4 52976883 52976973 -102653147 + MTEa LTR MaLR 278 365 -14 6 989 806 44 18 54 chr4 52977383 52977551 -102652569 + (CACAC)n Simple_repeat Simple_repeat 5 166 0 6 989 312 242 226 0 chr4 52978427 52978551 -102651569 + HAL1-3A_ME LINE L1 2286 2437 -421 6 989 1044 127 0 0 chr4 52978561 52978726 -102651394 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 6 989 21 71 0 0 chr4 52979663 52979705 -102650415 + AT_rich Low_complexity Low_complexity 1 42 0 6 989 24 0 0 0 chr4 52979965 52979989 -102650131 + AT_rich Low_complexity Low_complexity 1 24 0 6 989 285 357 80 28 chr4 52980560 52980736 -102649384 + MamRep1879 DNA hAT? 6 190 -26 6 989 231 36 0 0 chr4 52982174 52982202 -102647918 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 989 612 0 0 0 chr4 52982461 52982529 -102647591 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 989 521 192 61 0 chr4 52982568 52982667 -102647453 - B1_Mur1 SINE Alu -6 143 39 7 989 223 29 25 122 chr4 52982668 52982864 -102647256 + CT-rich Low_complexity Low_complexity 3 179 0 7 989 250 256 12 39 chr4 52982873 52982974 -102647146 - B1_Mus2 SINE Alu -21 99 3 7 989 24 0 0 0 chr4 52983030 52983054 -102647066 + AT_rich Low_complexity Low_complexity 1 24 0 7 989 244 309 114 57 chr4 52983240 52983415 -102646705 + MIRc SINE MIR 34 218 -50 7 989 241 266 7 52 chr4 52984634 52984769 -102645351 + CT-rich Low_complexity Low_complexity 3 131 0 7 989 240 352 40 62 chr4 52985055 52985282 -102644838 + MLT1K LTR MaLR 370 591 -4 7 989 635 274 13 0 chr4 52985418 52985571 -102644549 - RSINE1 SINE B4 -8 157 3 7 989 752 297 56 15 chr4 52986272 52986542 -102643578 + B4A SINE B4 2 282 -10 7 989 189 171 0 0 chr4 52986695 52986730 -102643390 + GA-rich Low_complexity Low_complexity 2 36 0 7 989 490 219 228 0 chr4 52986842 52986956 -102643164 + MTE2b LTR MaLR 177 316 -63 7 989 234 0 0 0 chr4 52987083 52987109 -102643011 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 989 522 287 92 13 chr4 52987461 52987613 -102642507 - RSINE1 SINE B4 0 165 2 7 989 245 317 47 28 chr4 52987901 52988008 -102642112 + L2 LINE L2 2424 2532 -887 7 989 390 256 73 43 chr4 52988021 52988254 -102641866 + L1ME2z LINE L1 5914 6153 -291 7 989 327 259 18 9 chr4 52988265 52988378 -102641742 - Lx7 LINE L1 -20 7676 7563 7 989 303 96 0 0 chr4 52988413 52988465 -102641655 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 989 683 265 104 8 chr4 52988465 52988692 -102641428 - Lx7 LINE L1 -279 7417 7175 7 989 522 0 0 0 chr4 52988692 52988750 -102641370 + (GTTTG)n Simple_repeat Simple_repeat 5 62 0 7 989 683 265 104 8 chr4 52988750 52988773 -102641347 - Lx7 LINE L1 -522 7174 7145 7 989 468 191 38 9 chr4 52989053 52989159 -102640961 - Lx7 LINE L1 -736 6960 6852 7 989 2710 204 112 40 chr4 52989224 52989971 -102640149 + Lx7 LINE L1 6066 6866 -830 7 989 2474 198 14 16 chr4 52991498 52991986 -102638134 + Lx6 LINE L1 6969 7455 -5 7 989 441 0 0 0 chr4 52993116 52993165 -102636955 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 989 22 0 0 0 chr4 52993579 52993601 -102636519 + AT_rich Low_complexity Low_complexity 1 22 0 7 989 1862 147 141 0 chr4 52994153 52994542 -102635578 - L1_Mur3 LINE L1 -6549 1163 720 7 989 540 103 13 0 chr4 52994547 52994625 -102635495 + B2_Mm2 SINE B2 1 79 -116 7 989 239 246 0 0 chr4 52994629 52994686 -102635434 + Lx7 LINE L1 7149 7205 -491 7 989 353 198 169 65 chr4 52994696 52994820 -102635300 + B2_Mm2 SINE B2 54 190 -5 7 989 798 233 170 3 chr4 52994830 52995209 -102634911 - L1_Mur3 LINE L1 -6986 726 45 7 989 573 122 25 1 chr4 52995221 52995319 -102634801 + MTB_Mm LTR MaLR 80 202 -205 7 989 1178 47 7 0 chr4 52995603 52995753 -102634367 + MTB_Mm LTR MaLR 1 151 -256 7 989 1850 243 89 11 chr4 52995755 52996304 -102633816 - L1_Mur3 LINE L1 -7079 633 42 7 989 522 98 0 0 chr4 52998100 52998182 -102631938 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 989 441 0 0 0 chr4 52998182 52998231 -102631889 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 989 268 295 0 0 chr4 52998607 52998685 -102631435 + L1M5 LINE L1 5567 5644 -596 7 989 436 283 102 25 chr4 52998768 52999004 -102631116 + Charlie4a DNA MER1_type 53 306 -202 7 989 740 152 58 19 chr4 52999549 52999703 -102630417 - RMER12 LTR ERVK 0 1322 1163 7 989 450 0 0 0 chr4 53000643 53000693 -102629427 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 989 602 219 219 21 chr4 53000791 53001029 -102629091 - MER2 DNA MER2_type -32 313 29 2 989 208 363 80 0 chr4 53001079 53001192 -102628928 + L2a LINE L2 3305 3426 0 3 989 2137 136 67 35 chr4 53003246 53003619 -102626501 + ORR1B1 LTR MaLR 1 385 -9 4 989 5688 187 67 14 chr4 53003648 53004860 -102625260 + ORR1B1-int LTR MaLR 234 1509 0 4 989 2658 108 33 30 chr4 53004860 53005253 -102624867 + ORR1B1 LTR MaLR 1 394 0 4 989 207 100 0 0 chr4 53005650 53005680 -102624440 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 5 989 1093 138 128 0 chr4 53005815 53006011 -102624109 + URR1A DNA MER1_type 6 226 0 6 989 953 114 64 0 chr4 53006150 53006290 -102623830 + B1_Mur3 SINE Alu 1 149 0 7 989 872 121 47 47 chr4 53006434 53006582 -102623538 + B1_Mur4 SINE Alu 3 150 0 8 989 201 128 51 0 chr4 53007852 53007891 -102622229 + T-rich Low_complexity Low_complexity 1 41 0 9 989 1440 91 38 0 chr4 53008987 53009173 -102620947 - B2_Mm1t SINE B2 0 193 1 1 989 701 161 145 8 chr4 53009207 53009338 -102620782 - B1_Mur3 SINE Alu 0 149 1 1 989 22 0 0 0 chr4 53009521 53009543 -102620577 + AT_rich Low_complexity Low_complexity 1 22 0 1 989 377 223 25 7 chr4 53009669 53009772 -102620348 - B3A SINE B2 -106 110 1 1 989 244 164 18 0 chr4 53010301 53010356 -102619764 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 989 441 244 0 0 chr4 53010513 53010591 -102619529 - ID4 SINE ID -4 79 2 1 989 1892 221 5 19 chr4 53010597 53010966 -102619154 - MTD LTR MaLR -12 407 44 1 989 1782 222 155 99 chr4 53011004 53011066 -102619054 - MTC-int LTR MaLR -9 1249 1192 1 989 2877 84 69 23 chr4 53011066 53011455 -102618665 - MTB_Mm LTR MaLR 0 407 1 1 989 1782 222 155 99 chr4 53011455 53011637 -102618483 - MTC-int LTR MaLR -67 1191 1043 1 989 5365 37 0 0 chr4 53011637 53012233 -102617887 + L1Md_T LINE L1 5987 6582 0 1 989 1782 222 155 99 chr4 53012233 53012721 -102617399 - MTC-int LTR MaLR -216 1042 475 1 989 28 0 0 0 chr4 53013679 53013707 -102616413 + AT_rich Low_complexity Low_complexity 1 28 0 2 989 1075 114 0 14 chr4 53014043 53014185 -102615935 + B1_Mus2 SINE Alu 1 140 -7 2 989 202 29 57 0 chr4 53014195 53014230 -102615890 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 989 256 338 79 95 chr4 53014386 53014690 -102615430 + ORR1D2 LTR MaLR 24 322 -48 2 989 435 281 92 49 chr4 53015138 53015233 -102614887 - B1F1 SINE Alu -1 148 48 2 989 2409 157 33 47 chr4 53015233 53015660 -102614460 + MTC LTR MaLR 1 421 0 2 989 435 281 92 49 chr4 53015660 53015706 -102614414 - B1F1 SINE Alu -102 47 2 2 989 1074 23 0 15 chr4 53015959 53016092 -102614028 - MTA_Mm LTR MaLR -265 131 1 2 989 2262 30 0 29 chr4 53016092 53016404 -102613716 - MTA_Mm-int LTR MaLR 0 1098 796 2 989 2956 30 5 3 chr4 53016376 53016748 -102613372 - MTA_Mm-int LTR MaLR -725 373 1 2 989 3688 18 2 10 chr4 53016748 53017147 -102612973 - MTA_Mm LTR MaLR 0 396 1 2 989 824 273 17 0 chr4 53017469 53017645 -102612475 - B3A SINE B2 -17 181 3 2 989 263 309 74 52 chr4 53018011 53018189 -102611931 + MIRb SINE MIR 4 179 -89 2 989 195 42 0 0 chr4 53019700 53019724 -102610396 + (TATATG)n Simple_repeat Simple_repeat 4 27 0 2 989 441 0 0 0 chr4 53022006 53022055 -102608065 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 989 262 309 14 14 chr4 53022118 53022187 -102607933 + ID SINE ID 2 70 -154 3 989 2533 147 79 19 chr4 53022394 53022865 -102607255 - RLTR28 LTR ERVL -5 519 21 3 989 412 288 100 62 chr4 53023261 53023661 -102606459 - RMER10A LTR ERVL -16 426 12 3 989 345 284 136 33 chr4 53023763 53024036 -102606084 + Charlie4a DNA MER1_type 110 410 -98 3 989 765 219 54 12 chr4 53026148 53026314 -102603806 - B3 SINE B2 -40 176 4 3 989 498 33 0 0 chr4 53026729 53026789 -102603331 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 989 3023 174 44 70 chr4 53026954 53027586 -102602534 - RLTR18 LTR ERVK 0 616 1 3 989 254 207 253 41 chr4 53029165 53029311 -102600809 - MIR SINE MIR -43 219 43 3 989 3302 61 38 0 chr4 53029314 53029706 -102600414 - MTB_Mm LTR MaLR 0 407 1 3 989 273 210 0 0 chr4 53030309 53030371 -102599749 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 4 989 745 275 56 20 chr4 53030372 53030569 -102599551 - B3 SINE B2 -11 205 2 4 989 331 376 0 0 chr4 53030613 53030714 -102599406 - PB1D10 SINE Alu -13 104 4 4 989 600 314 45 19 chr4 53031605 53031761 -102598359 - RSINE1 SINE B4 -4 161 2 4 989 1293 196 21 42 chr4 53032351 53032638 -102597482 - Lx5 LINE L1 -1 7049 6769 4 989 1189 151 71 28 chr4 53032639 53032851 -102597269 - Lx5 LINE L1 -461 6589 6369 4 989 279 154 0 0 chr4 53032876 53032941 -102597179 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 989 604 179 78 55 chr4 53033520 53033572 -102596548 + Lx9 LINE L1 7414 7465 -179 4 989 1385 92 38 0 chr4 53033572 53033756 -102596364 + B2_Mm2 SINE B2 1 191 -4 4 989 604 179 78 55 chr4 53033756 53033922 -102596198 + Lx9 LINE L1 7466 7637 -7 4 989 1243 201 112 6 chr4 53035593 53035904 -102594216 - RMER1C Other Other -1 1341 998 4 989 839 296 42 106 chr4 53035930 53036570 -102593550 - RMER1C Other Other -655 687 89 4 989 244 167 170 43 chr4 53037525 53037619 -102592501 + L2a LINE L2 1719 1824 -1595 5 989 562 288 290 30 chr4 53038006 53038478 -102591642 + L2a LINE L2 2367 2961 -458 5 989 354 115 5 0 chr4 53038737 53038790 -102591330 - ORR1C1 LTR MaLR 0 370 320 5 989 1241 90 0 0 chr4 53038791 53038957 -102591163 + ORR1A2 LTR MaLR 1 166 -161 5 989 894 97 132 0 chr4 53038948 53039092 -102591028 - ORR1C1-int LTR MaLR -1798 165 3 5 989 2044 137 118 12 chr4 53039092 53039431 -102590689 - ORR1C1 LTR MaLR -2 376 2 5 989 361 236 56 0 chr4 53039563 53039635 -102590485 + MLT1A LTR MaLR 259 334 -40 5 989 381 283 102 17 chr4 53039641 53039817 -102590303 + L2a LINE L2 3232 3422 -4 5 989 557 246 55 67 chr4 53040031 53040250 -102589870 - MTEb LTR MaLR 0 379 142 5 989 298 217 56 42 chr4 53040261 53040333 -102589787 - MTEb LTR MaLR -289 81 9 5 989 200 206 0 0 chr4 53040486 53040520 -102589600 + polypyrimidine Low_complexity Low_complexity 1 34 0 5 989 184 250 64 149 chr4 53041593 53041664 -102588456 + L2 LINE L2 2272 2327 -1092 5 989 230 0 0 32 chr4 53041664 53041695 -102588425 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 989 184 250 64 149 chr4 53041695 53041764 -102588356 + L2 LINE L2 2328 2400 -1019 5 989 2284 241 34 23 chr4 53047285 53047842 -102582278 + RLTR20B1 LTR ERVK 1 563 0 5 989 431 0 0 0 chr4 53047872 53047922 -102582198 + L1_Mus2 LINE L1 6517 6566 0 5 989 330 306 23 46 chr4 53048868 53048998 -102581122 - MIR SINE MIR -135 127 1 6 989 216 86 0 0 chr4 53049030 53049065 -102581055 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 989 247 286 60 20 chr4 53049543 53049693 -102580427 + L1ME4a LINE L1 5924 6079 -45 6 989 1193 60 107 57 chr4 53049901 53050078 -102580042 - B2_Mm2 SINE B2 -8 187 2 6 989 563 229 8 17 chr4 53050117 53050237 -102579883 + B1_Mur1 SINE Alu 29 147 -2 6 989 292 169 0 139 chr4 53050733 53050884 -102579236 + GA-rich Low_complexity Low_complexity 5 134 0 6 989 352 317 24 8 chr4 53052677 53052801 -102577319 + Charlie9 DNA MER1_type 1 126 -2631 6 989 339 25 0 0 chr4 53053882 53053922 -102576198 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 989 22 0 0 0 chr4 53054700 53054722 -102575398 + AT_rich Low_complexity Low_complexity 1 22 0 6 989 279 114 0 0 chr4 53055892 53055936 -102574184 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 6 989 495 0 0 0 chr4 53056585 53056640 -102573480 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 989 762 246 107 5 chr4 53057501 53057697 -102572423 + B3 SINE B2 1 216 0 7 989 194 370 90 85 chr4 53059506 53059683 -102570437 + L3 LINE CR1 3395 3572 -917 7 989 215 243 40 67 chr4 53059940 53060015 -102570105 + L3 LINE CR1 3746 3818 -671 7 989 225 320 86 98 chr4 53060021 53060184 -102569936 - LTR16D1 LTR ERVL -451 224 64 7 989 351 0 0 0 chr4 53060556 53060595 -102569525 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 989 180 77 0 0 chr4 53060608 53060634 -102569486 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 989 1217 128 64 0 chr4 53060730 53060934 -102569186 + MTC LTR MaLR 5 221 -200 7 989 2294 123 123 56 chr4 53060988 53061453 -102568667 + RLTR25B LTR ERVK 533 1028 0 7 989 655 206 23 8 chr4 53061453 53061585 -102568535 + MTC LTR MaLR 216 349 -72 7 989 303 71 0 0 chr4 53064113 53064155 -102565965 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 989 997 225 14 5 chr4 53064208 53064422 -102565698 + B3 SINE B2 1 216 0 7 989 396 0 0 0 chr4 53064809 53064853 -102565267 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 989 222 91 0 0 chr4 53064948 53064981 -102565139 + (T)n Simple_repeat Simple_repeat 1 33 0 8 989 38641 30 1 0 chr4 53064999 53072086 -102558034 - L1Md_T LINE L1 0 6585 1 8 989 750 200 0 52 chr4 53073490 53073643 -102556477 + B1_Mur2 SINE Alu 4 148 -1 8 989 468 0 0 0 chr4 53074869 53074921 -102555199 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 989 363 78 0 0 chr4 53076050 53076101 -102554019 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 989 1718 172 63 41 chr4 53077594 53077957 -102552163 + ORR1D1 LTR MaLR 1 371 -3 8 989 243 88 0 0 chr4 53079101 53079135 -102550985 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 989 225 242 112 29 chr4 53080394 53080487 -102549633 + MIR3 SINE MIR 3 105 -163 8 989 210 269 176 15 chr4 53080716 53080784 -102549336 + ID4 SINE ID 3 81 -2 8 989 225 212 22 17 chr4 53081428 53081487 -102548633 - MIR SINE MIR -59 149 92 9 989 30 27 0 0 chr4 53083983 53084020 -102546100 + AT_rich Low_complexity Low_complexity 1 37 0 9 123 1093 90 59 24 chr4 53084024 53084194 -102545926 + B2_Mm2 SINE B2 1 176 -19 9 990 28 48 0 0 chr4 53084213 53084255 -102545865 + AT_rich Low_complexity Low_complexity 1 42 0 9 990 331 238 15 45 chr4 53084274 53084406 -102545714 + Lx9 LINE L1 7516 7643 -1 9 990 189 0 0 0 chr4 53085635 53085656 -102544464 + (CAGCC)n Simple_repeat Simple_repeat 4 24 0 9 990 414 329 27 14 chr4 53086168 53086316 -102543804 - MER5A1 DNA MER1_type -4 162 13 9 990 219 361 57 2 chr4 53086460 53086615 -102543505 + MIRc SINE MIR 50 210 -58 9 990 1277 34 0 0 chr4 53087688 53087835 -102542285 + B1_Mm SINE Alu 1 147 0 9 990 1945 195 69 8 chr4 53089037 53089429 -102540691 + MTD LTR MaLR 4 419 0 9 990 195 100 0 0 chr4 53090006 53090036 -102540084 + (CTAAT)n Simple_repeat Simple_repeat 5 34 0 1 990 276 250 67 0 chr4 53091280 53091384 -102538736 + L1M5 LINE L1 5775 5885 -294 1 990 207 0 0 0 chr4 53091393 53091416 -102538704 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 990 1536 159 77 4 chr4 53091422 53091681 -102538439 + Lx4A LINE L1 6781 7058 0 1 990 21 0 0 0 chr4 53091681 53091702 -102538418 + AT_rich Low_complexity Low_complexity 1 21 0 1 990 249 238 129 12 chr4 53092741 53092826 -102537294 - MIRb SINE MIR -82 186 92 1 990 271 322 72 33 chr4 53093225 53093439 -102536681 + MIRb SINE MIR 27 259 -9 1 990 217 111 19 135 chr4 53095775 53095827 -102534293 + MIRb SINE MIR 221 266 -2 1 990 250 195 208 48 chr4 53096366 53096492 -102533628 + MIR SINE MIR 6 149 -119 1 990 538 261 8 8 chr4 53100575 53100706 -102529414 + B1F SINE Alu 3 133 -16 1 990 5147 75 44 12 chr4 53100769 53101456 -102528664 + L1Md_F2 LINE L1 5872 6580 -2 1 990 180 0 0 0 chr4 53102102 53102122 -102527998 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 990 285 355 45 75 chr4 53103332 53103533 -102526587 + MIRb SINE MIR 35 229 -39 1 990 348 329 101 30 chr4 53104470 53104639 -102525481 + MIRb SINE MIR 43 223 -45 1 990 260 231 16 32 chr4 53104733 53104858 -102525262 + (TAA)n Simple_repeat Simple_repeat 3 125 0 1 990 721 289 55 29 chr4 53104890 53105271 -102524849 - L1MA9 LINE L1 -1 6311 5921 1 990 252 279 98 43 chr4 53106700 53106803 -102523317 + MIR SINE MIR 60 174 -94 1 990 327 130 0 0 chr4 53107535 53107589 -102522531 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 1 990 366 143 0 0 chr4 53108836 53108899 -102521221 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 990 1838 259 27 20 chr4 53109486 53109578 -102520542 + L1_Rod LINE L1 5260 5353 -494 1 990 5788 85 20 10 chr4 53109578 53110375 -102519745 - Lx LINE L1 0 6654 5850 1 990 3221 118 7 0 chr4 53110375 53110833 -102519287 + Lx LINE L1 5390 5850 -33 1 990 395 236 128 27 chr4 53112135 53112283 -102517837 + RSINE1 SINE B4 1 163 -2 1 990 394 325 88 61 chr4 53112628 53112890 -102517230 + L1M5 LINE L1 4961 5229 -917 1 990 396 0 0 0 chr4 53113269 53113313 -102516807 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 990 331 348 17 9 chr4 53114624 53114740 -102515380 + PB1D10 SINE Alu 1 117 0 1 990 908 229 10 30 chr4 53114846 53115044 -102515076 + B3 SINE B2 23 216 0 1 990 22 0 0 0 chr4 53115231 53115253 -102514867 + AT_rich Low_complexity Low_complexity 1 22 0 1 990 24 53 0 0 chr4 53115291 53115329 -102514791 + AT_rich Low_complexity Low_complexity 1 38 0 1 990 438 257 48 35 chr4 53115847 53115992 -102514128 + B4A SINE B4 2 148 -144 1 990 205 306 28 0 chr4 53116081 53116153 -102513967 + (CATA)n Simple_repeat Simple_repeat 4 77 0 1 990 438 20 0 0 chr4 53116179 53116230 -102513890 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 990 395 312 100 58 chr4 53117206 53117448 -102512672 - MIRb SINE MIR -13 249 2 1 990 330 26 0 0 chr4 53117725 53117764 -102512356 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 990 1241 34 0 7 chr4 53118250 53118397 -102511723 + B1_Mm SINE Alu 2 147 0 1 990 287 318 42 104 chr4 53119591 53119735 -102510385 - Charlie15a DNA MER1_type -37 187 53 1 990 368 284 62 17 chr4 53122612 53122791 -102507329 - MER5A DNA MER1_type 0 189 3 1 990 217 282 44 57 chr4 53123064 53123222 -102506898 + MIR3 SINE MIR 6 161 -47 1 990 270 0 0 0 chr4 53124523 53124553 -102505567 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 990 345 200 70 50 chr4 53125209 53125309 -102504811 + MER5B DNA MER1_type 4 105 -73 1 990 519 273 58 0 chr4 53125357 53125496 -102504624 + B1_Mus2 SINE Alu 1 147 0 1 990 1154 112 8 0 chr4 53125957 53126208 -102503912 + (TGGA)n Simple_repeat Simple_repeat 1 253 0 1 990 441 272 37 9 chr4 53126467 53126583 -102503537 + B1F1 SINE Alu 1 128 -21 1 990 289 296 0 12 chr4 53126587 53126669 -102503451 + ID4 SINE ID 3 83 0 1 990 350 273 35 26 chr4 53127101 53127214 -102502906 + PB1D10 SINE Alu 1 114 -3 1 990 429 224 13 0 chr4 53127232 53127308 -102502812 + ID4_ SINE ID 6 82 -1 1 990 189 250 60 160 chr4 53127650 53127750 -102502370 + MIRc SINE MIR 60 149 -119 1 990 312 341 101 0 chr4 53127752 53127890 -102502230 + RSINE1 SINE B4 2 153 -12 1 990 711 303 77 0 chr4 53127985 53128180 -102501940 + B4A SINE B4 1 210 -82 1 990 380 55 18 0 chr4 53128215 53128270 -102501850 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 990 180 0 0 0 chr4 53128699 53128719 -102501401 + (G)n Simple_repeat Simple_repeat 1 20 0 1 990 218 32 0 31 chr4 53128775 53128807 -102501313 + (GGA)n Simple_repeat Simple_repeat 2 32 0 1 990 226 309 25 0 chr4 53130479 53130560 -102499560 + MLT1A1 LTR MaLR 322 404 -4 1 990 337 181 0 33 chr4 53131267 53131387 -102498733 + (CAGAGA)n Simple_repeat Simple_repeat 3 118 0 1 990 322 366 78 10 chr4 53131590 53131783 -102498337 - MIR SINE MIR -50 212 7 1 990 342 267 158 15 chr4 53131867 53132000 -102498120 + MIRc SINE MIR 4 155 -113 1 990 275 329 174 16 chr4 53132074 53132327 -102497793 + L1MA5A LINE L1 5687 5979 -318 1 990 208 367 38 0 chr4 53133640 53133719 -102496401 + MIRc SINE MIR 45 126 -142 1 990 279 324 98 42 chr4 53133785 53133978 -102496142 - MIR SINE MIR -23 239 36 1 990 265 211 0 34 chr4 53135030 53135089 -102495031 + G-rich Low_complexity Low_complexity 2 58 0 1 990 383 341 104 39 chr4 53137472 53137780 -102492340 + L3 LINE CR1 3638 3965 -524 1 990 302 279 0 0 chr4 53138228 53138307 -102491813 + ID4 SINE ID 1 79 -4 1 990 22 35 0 0 chr4 53138677 53138706 -102491414 + AT_rich Low_complexity Low_complexity 1 29 0 1 990 822 261 11 0 chr4 53138786 53138966 -102491154 + B3 SINE B2 30 211 -5 1 990 545 234 8 24 chr4 53139414 53139426 -102490694 - B3A SINE B2 -10 188 179 1 990 441 0 0 0 chr4 53139426 53139475 -102490645 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 990 545 234 8 24 chr4 53139475 53139589 -102490531 - B3A SINE B2 -20 178 64 1 990 489 34 0 0 chr4 53140725 53140784 -102489336 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 990 1086 176 9 51 chr4 53141842 53142058 -102488062 - B3 SINE B2 -9 207 1 1 990 194 325 24 24 chr4 53142125 53142210 -102487910 + MIRb SINE MIR 136 220 -48 1 990 181 183 138 77 chr4 53142965 53143030 -102487090 + MIRm SINE MIR 117 185 -91 1 990 320 176 0 0 chr4 53143059 53143110 -102487010 - B1F SINE Alu 0 149 99 1 990 189 265 0 0 chr4 53143186 53143269 -102486851 + (TAGTG)n Simple_repeat Simple_repeat 5 87 0 1 990 303 274 0 0 chr4 53143320 53143473 -102486647 + (TAGTG)n Simple_repeat Simple_repeat 1 153 0 1 990 203 273 0 0 chr4 53143476 53143531 -102486589 + (TATAG)n Simple_repeat Simple_repeat 1 55 0 1 990 235 272 0 0 chr4 53143540 53143729 -102486391 + (TAGTG)n Simple_repeat Simple_repeat 1 189 0 1 990 265 349 70 38 chr4 53144997 53145155 -102484965 + MIRb SINE MIR 42 204 -64 1 990 748 251 35 0 chr4 53145202 53145373 -102484747 + B3A SINE B2 4 180 -18 1 990 233 29 0 29 chr4 53146410 53146445 -102483675 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 990 252 244 84 12 chr4 53146703 53146786 -102483334 + CR1_Mam LINE CR1 1455 1543 -661 1 990 433 305 123 15 chr4 53147713 53147916 -102482204 - MIRb SINE MIR -7 261 37 1 990 235 0 57 0 chr4 53148527 53148562 -102481558 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 990 348 289 133 0 chr4 53148603 53148731 -102481389 - MIR SINE MIR -106 156 12 1 990 234 0 0 0 chr4 53148821 53148847 -102481273 + (TATG)n Simple_repeat Simple_repeat 3 28 0 1 990 302 381 21 54 chr4 53149854 53150040 -102480080 + L1M5 LINE L1 3035 3214 -2932 1 990 339 257 129 0 chr4 53150326 53150396 -102479724 + B1_Mur4 SINE Alu 1 79 -71 1 990 1116 295 51 35 chr4 53150435 53150748 -102479372 + MTEa LTR MaLR 52 369 -10 1 990 182 349 0 0 chr4 53152888 53152951 -102477169 - MIRm SINE MIR -1 275 213 1 990 283 290 65 30 chr4 53153775 53153920 -102476200 + MIRc SINE MIR 20 167 -41 1 990 234 289 43 92 chr4 53154092 53154256 -102475864 - YREP_Mm Unknown Unknown -1435 377 222 1 990 243 299 8 130 chr4 53154138 53154261 -102475859 + MT2B LTR ERVL 150 257 -344 1 990 505 248 0 37 chr4 53154153 53154262 -102475858 + ID_B1 SINE B4 79 183 -41 1 990 3479 33 2 0 chr4 53154278 53154673 -102475447 + MTA_Mm LTR MaLR 1 396 0 1 990 278 284 101 11 chr4 53154779 53154868 -102475252 + MIR SINE MIR 77 173 -89 1 990 296 255 13 24 chr4 53154897 53154990 -102475130 + ID4 SINE ID 4 96 -56 1 990 360 119 0 0 chr4 53155194 53155253 -102474867 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 990 477 34 0 0 chr4 53155264 53155323 -102474797 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 990 468 0 0 0 chr4 53156981 53157033 -102473087 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 990 311 299 77 44 chr4 53158713 53158937 -102471183 + MIRb SINE MIR 6 253 -15 1 990 180 300 83 0 chr4 53160317 53160377 -102469743 - L2 LINE L2 -3117 302 238 1 990 1299 253 115 36 chr4 53160816 53161573 -102468547 + L1ME1 LINE L1 5350 6169 -10 1 990 419 244 74 59 chr4 53162373 53162390 -102467730 + B4 SINE B4 69 87 -205 1 990 783 172 0 15 chr4 53162390 53162520 -102467600 + B1_Mur4 SINE Alu 2 129 -21 1 990 1301 20 0 0 chr4 53162880 53163027 -102467093 - B1_Mus2 SINE Alu 0 147 1 2 990 207 0 0 0 chr4 53165861 53165884 -102464236 + (G)n Simple_repeat Simple_repeat 1 23 0 2 990 440 212 25 33 chr4 53167517 53167639 -102462481 + B3 SINE B2 89 209 -7 2 990 1306 101 11 16 chr4 53168793 53168984 -102461136 + B2_Mm2 SINE B2 2 191 -4 2 990 21 0 0 0 chr4 53169847 53169868 -102460252 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 213 43 87 0 chr4 53171446 53171492 -102458628 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 2 990 251 211 53 0 chr4 53173196 53173253 -102456867 + CT-rich Low_complexity Low_complexity 4 63 0 2 990 432 0 0 0 chr4 53173481 53173529 -102456591 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 990 270 0 0 0 chr4 53173556 53173586 -102456534 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 990 546 263 136 25 chr4 53173697 53173896 -102456224 - ID_B1 SINE B4 -2 222 2 2 990 261 0 0 0 chr4 53174238 53174267 -102455853 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 990 742 252 7 0 chr4 53174311 53174466 -102455654 + B3 SINE B2 55 210 -6 2 990 22 80 0 0 chr4 53175505 53175555 -102454565 + AT_rich Low_complexity Low_complexity 1 50 0 2 990 690 280 138 23 chr4 53175690 53175881 -102454239 + B4A SINE B4 3 225 -67 2 990 215 61 30 0 chr4 53175881 53175914 -102454206 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 990 690 280 138 23 chr4 53175914 53175982 -102454138 + B4A SINE B4 226 292 0 2 990 294 206 0 0 chr4 53175984 53176052 -102454068 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 990 507 17 0 0 chr4 53176612 53176672 -102453448 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 990 243 0 0 0 chr4 53176672 53176698 -102453422 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 990 24 32 0 0 chr4 53176748 53176779 -102453341 + AT_rich Low_complexity Low_complexity 1 31 0 2 990 962 99 28 7 chr4 53176858 53177001 -102453119 + B1_Mm SINE Alu 1 146 -1 2 990 270 0 0 0 chr4 53177001 53177031 -102453089 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 2 990 822 94 0 0 chr4 53177031 53177148 -102452972 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 2 990 225 83 0 0 chr4 53177627 53177663 -102452457 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 990 214 140 20 20 chr4 53177712 53177763 -102452357 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 990 419 283 0 7 chr4 53177784 53177923 -102452197 + CT-rich Low_complexity Low_complexity 6 143 0 2 990 1033 119 21 2 chr4 53178362 53178550 -102451570 + (CACG)n Simple_repeat Simple_repeat 1 191 0 2 990 1125 128 0 0 chr4 53178550 53178730 -102451390 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 990 205 184 0 26 chr4 53178730 53178755 -102451365 + (CACG)n Simple_repeat Simple_repeat 3 27 0 2 990 368 182 112 11 chr4 53179453 53179542 -102450578 + B4A SINE B4 1 98 -194 2 990 333 214 0 0 chr4 53179593 53179663 -102450457 + B4A SINE B4 216 285 -7 2 990 345 267 108 86 chr4 53179810 53180125 -102449995 + L1ME4a LINE L1 5802 6123 -1 2 990 643 202 229 34 chr4 53180390 53180569 -102449551 + B3 SINE B2 3 216 0 2 990 261 0 0 0 chr4 53180961 53180990 -102449130 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 990 182 119 48 0 chr4 53182059 53182101 -102448019 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 2 990 183 42 0 0 chr4 53182879 53182903 -102447217 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 990 553 228 26 0 chr4 53182904 53183018 -102447102 - RSINE1 SINE B4 -41 124 8 2 990 261 195 0 65 chr4 53183122 53183215 -102446905 + G-rich Low_complexity Low_complexity 6 92 0 2 990 22 0 0 0 chr4 53183623 53183645 -102446475 + AT_rich Low_complexity Low_complexity 1 22 0 2 990 1051 82 7 27 chr4 53183646 53183796 -102446324 - B1_Mus2 SINE Alu 0 147 1 2 990 4617 197 82 78 chr4 53183802 53183896 -102446224 - Lx7 LINE L1 0 7696 7556 2 990 723 81 0 0 chr4 53183896 53183995 -102446125 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 2 990 4617 197 82 78 chr4 53183995 53185112 -102445008 - Lx7 LINE L1 -141 7555 6481 2 990 4569 112 36 52 chr4 53186132 53186610 -102443510 + RMER17D2 LTR ERVK 1 474 -335 2 990 829 101 7 7 chr4 53186610 53186759 -102443361 + (TC)n Simple_repeat Simple_repeat 2 150 0 2 990 4569 112 36 52 chr4 53186759 53187101 -102443019 + RMER17D2 LTR ERVK 475 808 -1 2 990 430 350 125 8 chr4 53187401 53187657 -102442463 + B4 SINE B4 1 286 -6 2 990 21 0 0 0 chr4 53188139 53188160 -102441960 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 457 330 61 6 chr4 53188802 53189030 -102441090 + MIR SINE MIR 9 247 -15 2 990 564 262 8 0 chr4 53189108 53189234 -102440886 + RSINE1 SINE B4 4 130 -35 2 990 396 275 0 114 chr4 53189221 53189344 -102440776 + RSINE1 SINE B4 56 164 -1 2 990 3611 165 93 75 chr4 53189395 53190281 -102439839 - RMER19B LTR ERVK 0 902 1 2 990 947 241 136 99 chr4 53192011 53192276 -102437844 - RMER4B LTR ERVK -6 579 284 2 990 441 0 0 0 chr4 53192276 53192325 -102437795 + (CAG)n Simple_repeat Simple_repeat 3 51 0 2 990 947 241 136 99 chr4 53192325 53192602 -102437518 - RMER4B LTR ERVK -302 283 17 2 990 222 62 0 0 chr4 53192627 53192659 -102437461 + (A)n Simple_repeat Simple_repeat 1 32 0 2 990 425 280 88 16 chr4 53192940 53193132 -102436988 + MLT1A1 LTR MaLR 4 209 -199 2 990 298 287 97 37 chr4 53193580 53193714 -102436406 - MLT1A1 LTR MaLR -83 325 184 2 990 243 0 0 0 chr4 53194934 53194961 -102435159 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 990 1515 179 94 20 chr4 53194966 53195173 -102434947 + ORR1C2 LTR MaLR 18 235 -149 2 990 780 96 0 0 chr4 53195173 53195288 -102434832 + (CCTG)n Simple_repeat Simple_repeat 3 117 0 2 990 1515 179 94 20 chr4 53195288 53195422 -102434698 + ORR1C2 LTR MaLR 236 384 0 2 990 2317 170 66 2 chr4 53195456 53195852 -102434268 + MTC LTR MaLR 1 421 0 2 990 185 222 133 0 chr4 53196626 53196671 -102433449 - L3 LINE CR1 -3563 926 876 2 990 2932 281 72 24 chr4 53196834 53197780 -102432340 + Lx8 LINE L1 6482 7472 -1 2 990 372 22 0 0 chr4 53198141 53198186 -102431934 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 990 2126 159 35 5 chr4 53198372 53198739 -102431381 - ORR1C1 LTR MaLR 0 378 1 2 990 263 216 0 63 chr4 53198834 53198913 -102431207 + ID_B1 SINE B4 146 219 -5 2 990 369 289 222 88 chr4 53199152 53199502 -102430618 + MLT1A1 LTR MaLR 1 396 -12 2 990 226 208 0 0 chr4 53199660 53199708 -102430412 + ID_B1 SINE B4 99 146 -78 2 990 325 217 81 45 chr4 53200365 53200476 -102429644 + L1ME1 LINE L1 5907 6021 -158 2 990 381 223 84 8 chr4 53200927 53201058 -102429062 - Helitron1Nb_Mam RC Helitron -38 1078 938 2 990 1517 242 16 8 chr4 53201238 53201609 -102428511 + MTD LTR MaLR 7 380 -39 2 990 415 267 8 16 chr4 53202199 53202321 -102427799 - MTD LTR MaLR -298 121 1 2 990 2703 211 111 77 chr4 53202528 53203360 -102426760 + RMER13A LTR ERVK 1 860 0 2 990 861 274 5 0 chr4 53203545 53203746 -102426374 + B3 SINE B2 2 203 -13 2 990 186 43 0 0 chr4 53204926 53204949 -102425171 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 990 241 227 22 11 chr4 53205447 53205536 -102424584 + CT-rich Low_complexity Low_complexity 3 92 0 2 990 213 286 65 19 chr4 53205571 53205678 -102424442 - B1F1 SINE Alu -6 143 32 2 990 434 290 94 39 chr4 53206160 53206394 -102423726 - L1M5 LINE L1 -617 5577 5331 2 990 423 254 72 0 chr4 53206673 53206811 -102423309 + B1F1 SINE Alu 2 149 0 2 990 1032 179 34 68 chr4 53208197 53208431 -102421689 - URR1A DNA MER1_type 0 226 1 2 990 593 228 13 40 chr4 53210324 53210475 -102419645 + B1_Mur1 SINE Alu 3 149 0 2 990 351 310 31 8 chr4 53210815 53210945 -102419175 - MARNA DNA Mariner -150 436 304 2 990 2156 175 79 5 chr4 53211322 53211713 -102418407 - MTC LTR MaLR -1 420 1 2 990 1210 222 102 119 chr4 53211994 53212496 -102417624 + RLTR18B LTR ERVK 18 510 -2 2 990 263 282 25 91 chr4 53213171 53213191 -102416929 + MT2B2 LTR ERVL 144 155 -429 2 990 581 254 0 0 chr4 53213191 53213317 -102416803 + B1F SINE Alu 3 128 -21 2 990 641 225 180 6 chr4 53213418 53213601 -102416519 + B3 SINE B2 2 216 0 2 990 477 0 0 0 chr4 53213815 53213868 -102416252 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 990 198 0 0 0 chr4 53213879 53213901 -102416219 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 2 990 1165 71 0 0 chr4 53213912 53214052 -102416068 - B1_Mus1 SINE Alu -7 141 2 2 990 262 308 0 0 chr4 53214203 53214268 -102415852 + CT-rich Low_complexity Low_complexity 5 69 0 2 990 213 121 0 0 chr4 53214286 53214319 -102415801 + (GGAGAA)n Simple_repeat Simple_repeat 2 34 0 2 990 1242 100 0 0 chr4 53214319 53214499 -102415621 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 990 390 69 0 0 chr4 53215022 53215080 -102415040 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 2 123 1201 173 250 15 chr4 53215177 53215505 -102414615 + MTD LTR MaLR 1 405 -14 2 991 289 264 28 0 chr4 53217329 53217401 -102412719 + PB1D10 SINE Alu 24 97 -20 2 991 367 242 42 83 chr4 53218430 53218574 -102411546 - L1MC1 LINE L1 0 6333 6196 2 991 227 380 49 27 chr4 53218778 53218962 -102411158 - L2b LINE L2 -217 3158 2971 2 991 181 0 33 33 chr4 53219384 53219414 -102410706 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 991 31 44 0 0 chr4 53220385 53220430 -102409690 + AT_rich Low_complexity Low_complexity 1 45 0 2 991 533 29 29 0 chr4 53221244 53221314 -102408806 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 2 991 711 203 7 34 chr4 53221326 53221474 -102408646 - B1_Mur2 SINE Alu -4 145 2 2 991 521 325 48 108 chr4 53221844 53221924 -102408196 + MLT1B LTR MaLR 28 99 -291 2 991 328 277 0 0 chr4 53221924 53222007 -102408113 + ID4 SINE ID 1 83 0 2 991 521 325 48 108 chr4 53222007 53222305 -102407815 + MLT1B LTR MaLR 100 383 -7 2 991 1609 176 21 0 chr4 53222530 53222819 -102407301 - ORR1B1 LTR MaLR -99 295 1 2 991 3374 89 8 8 chr4 53223076 53223554 -102406566 + Lx LINE L1 6172 6649 -5 3 991 819 0 0 0 chr4 53223554 53223645 -102406475 + (GGGAA)n Simple_repeat Simple_repeat 4 94 0 3 991 240 152 66 33 chr4 53223648 53223709 -102406411 + MER5A1 DNA MER1_type 61 123 -43 3 991 289 277 34 6 chr4 53225843 53225966 -102404154 - MIRb SINE MIR -17 251 119 3 991 984 274 62 4 chr4 53226258 53226533 -102403587 + B4A SINE B4 2 292 0 3 991 607 290 35 0 chr4 53227019 53227164 -102402956 + ID_B1 SINE B4 23 172 -52 3 991 1415 269 55 133 chr4 53227182 53227698 -102402422 - Lx7 LINE L1 -242 7231 6723 3 991 1101 92 17 0 chr4 53227698 53227871 -102402249 + (CTA)n Simple_repeat Simple_repeat 3 178 0 3 991 1415 260 52 168 chr4 53227871 53227921 -102402199 - Lx7 LINE L1 -974 6722 6722 3 991 999 119 17 0 chr4 53227921 53228097 -102402023 + (CTA)n Simple_repeat Simple_repeat 1 179 0 3 991 1415 260 52 168 chr4 53228097 53228259 -102401861 - Lx7 LINE L1 -974 6722 6557 3 991 767 305 0 0 chr4 53228865 53229075 -102401045 + B3 SINE B2 2 211 -5 3 991 1164 258 99 0 chr4 53229191 53229525 -102400595 + MTE2b LTR MaLR 13 379 0 3 991 260 226 0 16 chr4 53232965 53233028 -102397092 + L2a LINE L2 3363 3424 -2 3 991 396 156 0 32 chr4 53233280 53233373 -102396747 + GA-rich Low_complexity Low_complexity 2 91 0 3 991 247 298 71 0 chr4 53233376 53233460 -102396660 - PB1D10 SINE Alu -27 90 1 3 991 315 344 139 29 chr4 53235346 53235627 -102394493 + LTR16A1 LTR ERVL 1 312 -144 3 991 1140 113 108 0 chr4 53235692 53235887 -102394233 - URR1B DNA MER1_type -9 216 1 3 991 832 169 42 7 chr4 53236004 53236147 -102393973 - B1_Mur1 SINE Alu -1 148 1 3 991 413 291 15 23 chr4 53236276 53236406 -102393714 - B1F SINE Alu -1 148 20 3 991 450 209 50 46 chr4 53236543 53236706 -102393414 + L1ME4a LINE L1 5639 5827 -297 3 991 35 63 0 0 chr4 53236753 53236816 -102393304 + AT_rich Low_complexity Low_complexity 1 63 0 3 991 225 240 0 0 chr4 53236834 53236884 -102393236 + L1ME4a LINE L1 5840 5889 -1993 3 991 22 0 0 0 chr4 53237287 53237309 -102392811 + AT_rich Low_complexity Low_complexity 1 22 0 3 991 233 294 20 0 chr4 53237324 53237375 -102392745 - PB1D10 SINE Alu -65 52 1 3 991 687 171 0 0 chr4 53238079 53238208 -102391912 + (TA)n Simple_repeat Simple_repeat 1 129 0 3 991 180 281 111 11 chr4 53238645 53238735 -102391385 + MIRc SINE MIR 52 150 -118 3 991 1534 129 218 57 chr4 53239396 53239576 -102390544 + RMER17C LTR ERVK 1 182 -228 3 991 981 119 0 0 chr4 53239576 53239727 -102390393 + (TCTCC)n Simple_repeat Simple_repeat 1 151 0 3 991 1534 129 218 57 chr4 53239727 53239899 -102390221 + RMER17C LTR ERVK 183 409 -1 3 991 285 283 44 9 chr4 53241102 53241113 -102389007 + ID_B1 SINE B4 77 122 -102 3 991 291 250 67 11 chr4 53241113 53241202 -102388918 + B1F2 SINE Alu 7 100 -49 3 991 285 283 44 9 chr4 53241202 53241216 -102388904 + ID_B1 SINE B4 123 194 -30 3 991 326 350 0 0 chr4 53241821 53241910 -102388210 + polypurine Low_complexity Low_complexity 2 90 0 3 991 3614 13 2 0 chr4 53241910 53242305 -102387815 - MTA_Mm LTR MaLR 0 396 1 3 991 1337 221 16 45 chr4 53242511 53242819 -102387301 + Lx6 LINE L1 7136 7434 -26 3 991 325 247 0 28 chr4 53243266 53243358 -102386762 - L1_Mur3 LINE L1 -445 5438 5351 3 991 567 226 105 30 chr4 53243361 53243587 -102386533 - L1_Mur3 LINE L1 -1550 4596 4363 3 991 520 319 30 0 chr4 53243650 53243785 -102386335 + RSINE1 SINE B4 3 141 -24 3 991 462 49 0 0 chr4 53243795 53243856 -102386264 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 991 235 298 0 0 chr4 53243982 53244039 -102386081 - MLT1C LTR MaLR -78 312 256 3 991 448 229 137 39 chr4 53244099 53244281 -102385839 - MLT1C LTR MaLR -210 257 58 3 991 262 347 152 11 chr4 53244325 53244602 -102385518 - MER46C DNA MER2_type -5 333 18 3 991 648 260 58 24 chr4 53244674 53244879 -102385241 + B4 SINE B4 4 215 -77 3 991 535 339 43 8 chr4 53244891 53245126 -102384994 - MLT1D LTR MaLR -2 503 261 3 991 22 0 0 0 chr4 53245184 53245206 -102384914 + AT_rich Low_complexity Low_complexity 1 22 0 3 991 434 266 38 75 chr4 53245479 53245506 -102384614 - Charlie5 DNA MER1_type -1 2623 2599 3 991 1445 241 60 3 chr4 53245506 53245856 -102384264 + ORR1D2 LTR MaLR 1 370 0 3 991 434 266 38 75 chr4 53245856 53246068 -102384052 - Charlie5 DNA MER1_type -26 2598 2393 3 991 1934 252 35 8 chr4 53246068 53246576 -102383544 + Lx8 LINE L1 6551 7072 -401 3 991 323 259 129 0 chr4 53246601 53246686 -102383434 + Lx8 LINE L1 7035 7130 -343 3 991 546 269 42 14 chr4 53246947 53247090 -102383030 - B1F SINE Alu -2 147 1 3 991 350 327 10 0 chr4 53247186 53247287 -102382833 - ID_B1 SINE B4 -37 187 86 3 991 1765 222 98 87 chr4 53248195 53249076 -102381044 - RMER17B LTR ERVK -9 899 1 3 991 504 331 60 14 chr4 53249410 53249695 -102380425 + L1MC LINE L1 5511 5808 -2074 3 991 25 0 0 0 chr4 53249844 53249869 -102380251 + AT_rich Low_complexity Low_complexity 1 25 0 3 991 984 228 52 121 chr4 53249959 53250364 -102379756 - MTE2a LTR MaLR 0 379 3 3 991 1430 266 86 5 chr4 53251042 53251428 -102378692 + RMER1B Other Other 11 427 -639 3 991 1350 255 92 103 chr4 53251402 53252117 -102378003 + RMER1A Other Other 1 531 -499 3 991 326 204 10 0 chr4 53253352 53253450 -102376670 + GA-rich Low_complexity Low_complexity 3 101 0 3 991 1549 47 26 0 chr4 53253613 53253803 -102376317 + B2_Mm2 SINE B2 1 195 0 3 991 222 37 0 0 chr4 53254351 53254378 -102375742 + (A)n Simple_repeat Simple_repeat 1 27 0 3 991 887 121 174 6 chr4 53254383 53254550 -102375570 + B2_Mm2 SINE B2 1 195 0 3 991 180 0 0 0 chr4 53254558 53254578 -102375542 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 3 991 184 282 99 0 chr4 53254595 53254666 -102375454 + MIRc SINE MIR 93 170 -98 3 991 201 195 0 0 chr4 53255293 53255334 -102374786 + CT-rich Low_complexity Low_complexity 2 42 0 3 991 252 179 61 26 chr4 53256457 53256498 -102373622 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 3 991 3606 38 28 0 chr4 53256498 53256922 -102373198 - RLTR10C LTR ERVK 0 436 1 3 991 749 106 50 28 chr4 53256922 53257177 -102372943 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 3 991 790 247 25 20 chr4 53257410 53257608 -102372512 + B3 SINE B2 1 199 -17 3 991 1502 138 11 39 chr4 53258215 53258495 -102371625 + Lx4A LINE L1 6724 6995 -63 3 991 273 253 76 11 chr4 53258557 53258649 -102371471 - MIR SINE MIR -74 134 37 3 991 291 276 66 15 chr4 53259730 53259866 -102370254 + L1MB4 LINE L1 6023 6165 -15 3 991 419 192 0 0 chr4 53259884 53259962 -102370158 + L1MB8 LINE L1 6092 6169 -9 3 991 239 307 57 0 chr4 53259981 53260069 -102370051 - MIR3 SINE MIR -33 175 83 3 991 691 230 6 85 chr4 53260677 53260698 -102369422 - B3A SINE B2 -36 162 148 3 991 396 0 0 0 chr4 53260698 53260742 -102369378 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 991 691 230 6 85 chr4 53260742 53260896 -102369224 - B3A SINE B2 -51 147 1 3 991 302 250 15 0 chr4 53260916 53260984 -102369136 - ID4 SINE ID -11 72 4 3 991 609 293 24 18 chr4 53261374 53261544 -102368576 - B4 SINE B4 -92 200 30 3 991 226 314 0 65 chr4 53262358 53262450 -102367670 - MLT1A LTR MaLR -250 124 39 3 991 210 114 57 0 chr4 53262786 53262821 -102367299 + (CATG)n Simple_repeat Simple_repeat 2 38 0 3 991 363 44 0 0 chr4 53262821 53262866 -102367254 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 991 370 252 22 58 chr4 53262901 53263040 -102367080 - ORR1E LTR MaLR 0 379 246 3 991 597 257 247 11 chr4 53263132 53263162 -102366958 - MTEa LTR MaLR -39 340 307 3 991 180 0 0 0 chr4 53263162 53263182 -102366938 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 991 597 257 247 11 chr4 53263182 53263426 -102366694 - MTEa LTR MaLR -73 306 2 3 991 505 272 8 8 chr4 53263440 53263566 -102366554 - ORR1E LTR MaLR -232 127 2 3 991 288 0 0 0 chr4 53264873 53264905 -102365215 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 991 240 268 73 0 chr4 53264910 53264992 -102365128 - L1ME4a LINE L1 -72 6052 5965 3 991 719 196 0 20 chr4 53265069 53265220 -102364900 - B1_Mur4 SINE Alu 0 150 2 3 991 278 262 0 134 chr4 53265117 53265236 -102364884 - MT2B LTR ERVL -344 257 155 3 991 1978 264 84 21 chr4 53265253 53265861 -102364259 - Lx8 LINE L1 -5 7468 6823 3 991 182 65 65 0 chr4 53267489 53267520 -102362600 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 3 991 654 330 15 13 chr4 53267872 53268145 -102361975 + B4A SINE B4 2 286 -6 3 991 753 232 0 7 chr4 53268222 53268361 -102361759 + B1_Mur2 SINE Alu 1 138 -11 3 991 1504 16 57 5 chr4 53268767 53268960 -102361160 + L1Md_F2 LINE L1 6380 6582 0 3 991 189 389 57 6 chr4 53269107 53269265 -102360855 - L3 LINE CR1 -1196 3293 3128 3 991 594 270 7 0 chr4 53269563 53269711 -102360409 - B1F1 SINE Alu 0 149 1 3 991 831 157 0 56 chr4 53270254 53270396 -102359724 + B1_Mur2 SINE Alu 3 136 -13 3 991 356 72 0 18 chr4 53270396 53270453 -102359667 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 991 1372 246 111 40 chr4 53270602 53270818 -102359302 - MTE2a LTR MaLR -2 377 170 3 991 717 285 14 24 chr4 53270818 53271030 -102359090 - B3 SINE B2 -6 210 1 3 991 468 0 0 0 chr4 53271032 53271084 -102359036 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 991 1372 246 111 40 chr4 53271084 53271216 -102358904 - MTE2a LTR MaLR -210 169 1 3 991 269 261 37 178 chr4 53271282 53271417 -102358703 + MER20 DNA MER1_type 1 116 -103 3 991 321 295 9 0 chr4 53271473 53271585 -102358535 + ORR1E LTR MaLR 4 116 -243 3 991 512 287 21 0 chr4 53271865 53272008 -102358112 + B1F1 SINE Alu 1 146 -3 3 991 234 0 0 0 chr4 53272917 53272943 -102357177 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 991 675 214 21 0 chr4 53272983 53273123 -102356997 - B1F SINE Alu 0 149 7 3 991 235 133 21 43 chr4 53273132 53273226 -102356894 + (TTTG)n Simple_repeat Simple_repeat 2 93 0 3 991 323 333 0 26 chr4 53273261 53273378 -102356742 - PB1D10 SINE Alu -2 115 2 4 991 531 272 64 86 chr4 53273814 53274047 -102356073 - B4A SINE B4 -63 229 2 4 991 246 81 0 0 chr4 53275093 53275130 -102354990 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 991 412 155 0 27 chr4 53275636 53275709 -102354411 - URR1B DNA MER1_type 0 225 155 4 991 291 239 0 115 chr4 53275866 53275970 -102354150 - URR1B DNA MER1_type -134 91 1 4 991 342 45 0 0 chr4 53276318 53276362 -102353758 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 991 489 284 51 13 chr4 53277287 53277444 -102352676 + MIR SINE MIR 65 227 -35 4 991 187 320 79 40 chr4 53277679 53277780 -102352340 - MIRc SINE MIR -118 150 46 4 991 414 0 0 0 chr4 53277816 53277862 -102352258 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 991 215 276 101 29 chr4 53278367 53278505 -102351615 + MIRb SINE MIR 90 237 -31 4 991 23 0 0 0 chr4 53278990 53279013 -102351107 + AT_rich Low_complexity Low_complexity 1 23 0 4 991 372 43 0 0 chr4 53279049 53279095 -102351025 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 991 233 391 51 0 chr4 53279174 53279312 -102350808 + MER63D DNA AcHobo 175 319 -742 4 991 27 29 0 0 chr4 53279944 53279978 -102350142 + AT_rich Low_complexity Low_complexity 1 34 0 4 991 191 290 143 45 chr4 53279978 53280090 -102350030 + L2a LINE L2 3260 3382 -44 4 991 2236 182 7 40 chr4 53280195 53280625 -102349495 - MTD LTR MaLR -3 416 1 4 991 4997 157 17 128 chr4 53281782 53283011 -102347109 - RMER1B Other Other -36 994 5 4 991 209 277 0 0 chr4 53283041 53283088 -102347032 + CT-rich Low_complexity Low_complexity 1 47 0 4 991 412 312 50 7 chr4 53283091 53283230 -102346890 - ID_B1 SINE B4 -4 220 76 4 991 1911 203 15 144 chr4 53283395 53283979 -102346141 + RMER1A Other Other 1 568 -498 4 991 2828 150 33 80 chr4 53284240 53284673 -102345447 + RMER1A Other Other 457 894 -136 4 991 3080 35 3 13 chr4 53284673 53285047 -102345073 - L1_Mus1 LINE L1 -1 6566 6197 4 991 2828 150 33 80 chr4 53285047 53285215 -102344905 + RMER1A Other Other 895 1030 0 4 991 1700 21 0 0 chr4 53285807 53285994 -102344126 - B2_Mm1t SINE B2 -5 188 2 4 991 233 125 125 0 chr4 53286322 53286378 -102343742 - ORR1D1 LTR MaLR -274 100 38 4 991 1522 194 32 9 chr4 53286812 53287150 -102342970 - ORR1D1 LTR MaLR 0 374 29 4 991 207 0 0 0 chr4 53287152 53287175 -102342945 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 4 991 785 238 89 0 chr4 53287186 53287354 -102342766 + B3 SINE B2 10 192 -24 4 991 343 108 42 0 chr4 53287379 53287439 -102342681 + Lx4B LINE L1 6398 6491 -567 4 991 4123 97 51 5 chr4 53287464 53288054 -102342066 + Lx4A LINE L1 6442 7058 0 4 991 254 171 0 0 chr4 53288076 53288117 -102342003 + B4 SINE B4 239 279 -13 4 991 417 95 0 0 chr4 53288406 53288469 -102341651 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 991 428 264 62 39 chr4 53288803 53288933 -102341187 - ID_B1 SINE B4 -11 213 81 4 991 363 245 175 47 chr4 53288961 53289296 -102340824 + L1MB3 LINE L1 5787 6168 -15 4 991 482 307 13 19 chr4 53289475 53289631 -102340489 + MER58A DNA MER1_type 62 216 -8 4 991 215 288 13 27 chr4 53289877 53289952 -102340168 + PB1D7 SINE Alu 16 89 -31 4 991 443 259 0 49 chr4 53289889 53290011 -102340109 + ID_B1 SINE B4 109 224 0 4 991 507 73 0 0 chr4 53290011 53290079 -102340041 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 991 689 150 0 21 chr4 53290101 53290244 -102339876 + GA-rich Low_complexity Low_complexity 3 142 0 4 991 209 246 16 16 chr4 53291397 53291459 -102338661 + CT-rich Low_complexity Low_complexity 3 64 0 4 991 182 266 58 72 chr4 53291564 53291633 -102338487 + L2b LINE L2 3308 3375 0 4 991 238 288 142 14 chr4 53291698 53291846 -102338274 + L2a LINE L2 2490 2656 -763 4 991 266 50 25 0 chr4 53291853 53291893 -102338227 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 991 371 321 72 36 chr4 53292043 53292266 -102337854 + L2a LINE L2 2807 3037 -382 4 991 248 363 44 0 chr4 53294043 53294134 -102335986 - LTR16E2 LTR ERVL -113 455 361 4 991 1253 192 185 6 chr4 53294148 53294483 -102335637 - MTD LTR MaLR -14 405 11 4 991 414 0 0 0 chr4 53294944 53294990 -102335130 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 991 182 311 9 19 chr4 53295040 53295145 -102334975 + L2a LINE L2 3215 3318 -108 4 991 1123 242 91 26 chr4 53296101 53296453 -102333667 + MTEa LTR MaLR 1 375 -4 4 991 371 56 19 0 chr4 53297499 53297553 -102332567 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 991 196 284 144 21 chr4 53298865 53298962 -102331158 - MIRc SINE MIR -157 111 3 4 991 1946 131 9 131 chr4 53299241 53299463 -102330657 + RMER17C LTR ERVK 1 184 -226 4 991 194 0 0 37 chr4 53299463 53299490 -102330630 + (TTCTC)n Simple_repeat Simple_repeat 1 26 0 4 991 1328 67 0 6 chr4 53299493 53299674 -102330446 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 991 1946 131 9 131 chr4 53299674 53299914 -102330206 + RMER17C LTR ERVK 185 410 0 4 991 1256 114 5 40 chr4 53300490 53300691 -102329429 + B2_Mm2 SINE B2 1 194 -1 4 991 195 129 0 0 chr4 53300691 53300722 -102329398 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 991 1172 209 126 57 chr4 53300928 53301278 -102328842 - ORR1D1 LTR MaLR 0 374 1 4 991 861 196 72 0 chr4 53302322 53302516 -102327604 + RLTR25B LTR ERVK 3 210 -893 4 991 11473 20 0 0 chr4 53302519 53303821 -102326299 + L1Md_T LINE L1 4285 5586 -297 4 991 8650 32 0 0 chr4 53303821 53304817 -102325303 + L1Md_T LINE L1 5587 6582 0 4 991 3527 194 40 32 chr4 53304843 53304915 -102325205 + RLTR25B LTR ERVK 202 273 -755 4 991 4288 47 10 2 chr4 53304915 53305423 -102324697 + RLTR1B LTR ERV1 1 512 0 4 991 3527 194 40 32 chr4 53305423 53305968 -102324152 + RLTR25B LTR ERVK 274 806 -222 4 991 351 0 0 0 chr4 53305968 53306007 -102324113 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 991 438 20 0 0 chr4 53306007 53306057 -102324063 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 991 3527 194 40 32 chr4 53306057 53306257 -102323863 + RLTR25B LTR ERVK 807 1027 -1 4 991 3409 46 2 0 chr4 53306356 53306751 -102323369 + MTA_Mm LTR MaLR 1 396 0 4 991 373 276 62 21 chr4 53307109 53307297 -102322823 - MER2 DNA MER2_type -117 228 15 4 991 792 220 40 11 chr4 53307420 53307595 -102322525 + B3A SINE B2 1 180 -18 4 991 3290 8 62 0 chr4 53307676 53308063 -102322057 + IAPLTR2a LTR ERVK 1 411 0 4 991 347 303 122 18 chr4 53308138 53308360 -102321760 - L1MEc LINE L1 -4874 1526 1282 4 991 577 312 104 4 chr4 53308602 53308882 -102321238 - L1MEc LINE L1 -5541 859 552 4 991 238 216 11 64 chr4 53308958 53309052 -102321068 - Lx4B LINE L1 0 7058 6970 4 991 239 276 83 37 chr4 53309195 53309304 -102320816 + PB1D10 SINE Alu 1 114 -3 4 991 237 333 14 0 chr4 53309309 53309381 -102320739 + ID SINE ID 4 76 -148 4 991 227 224 20 0 chr4 53309387 53309436 -102320684 + GA-rich Low_complexity Low_complexity 3 52 0 4 991 21 0 0 0 chr4 53311203 53311224 -102318896 + AT_rich Low_complexity Low_complexity 1 21 0 4 991 620 275 0 0 chr4 53311224 53311373 -102318747 + B1_Mur2 SINE Alu 1 149 0 4 991 408 306 24 53 chr4 53311466 53311635 -102318485 + RSINE1 SINE B4 2 165 0 4 991 299 192 0 13 chr4 53311639 53311718 -102318402 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 991 219 146 0 0 chr4 53311944 53311985 -102318135 + (T)n Simple_repeat Simple_repeat 1 41 0 4 991 1260 27 0 0 chr4 53311985 53312132 -102317988 - B1_Mus2 SINE Alu 0 147 1 4 991 219 146 0 0 chr4 53312132 53312138 -102317982 + (T)n Simple_repeat Simple_repeat 1 6 0 4 991 225 113 0 145 chr4 53312140 53312202 -102317918 - RMER1C Other Other 0 1342 1290 4 991 4715 146 31 50 chr4 53312660 53313549 -102316571 - Lx4B LINE L1 -4 7054 6182 4 991 9717 133 22 7 chr4 53313549 53314832 -102315288 - L1_Mur2 LINE L1 -1839 4038 2741 4 991 1645 42 0 0 chr4 53314832 53315022 -102315098 - B2_Mm1a SINE B2 -3 190 1 4 991 9717 133 22 7 chr4 53315022 53315379 -102314741 - L1_Mur2 LINE L1 -3137 2740 2373 4 991 1002 186 0 10 chr4 53315360 53315556 -102314564 - L1_Mur2 LINE L1 -5986 1100 907 4 991 913 248 191 43 chr4 53315910 53316235 -102313885 + MTEb LTR MaLR 7 379 0 4 991 204 312 0 0 chr4 53316927 53316991 -102313129 + MIR SINE MIR 88 151 -57 4 991 219 139 0 0 chr4 53317847 53317883 -102312237 + (A)n Simple_repeat Simple_repeat 1 36 0 4 991 423 344 136 30 chr4 53318666 53319175 -102310945 - Charlie7 DNA MER1_type -384 2228 1666 4 991 251 306 117 0 chr4 53319298 53319409 -102310711 + MER58A DNA MER1_type 1 124 -100 4 991 387 0 0 0 chr4 53319557 53319600 -102310520 + (TCTCCC)n Simple_repeat Simple_repeat 3 45 0 4 991 189 94 0 0 chr4 53319605 53319637 -102310483 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 991 221 231 15 15 chr4 53320758 53320824 -102309296 + (TAA)n Simple_repeat Simple_repeat 3 68 0 4 991 186 365 48 40 chr4 53321691 53321942 -102308178 - L2a LINE L2 -256 3170 2918 4 991 2327 52 10 0 chr4 53322350 53322686 -102307434 + L1_Mus1 LINE L1 6269 6567 0 4 991 418 318 53 0 chr4 53322761 53322912 -102307208 - Tigger7 DNA MER2_type -2241 250 92 4 991 632 13 13 0 chr4 53322921 53322998 -102307122 + (TTCTC)n Simple_repeat Simple_repeat 3 80 0 4 991 216 0 0 0 chr4 53323461 53323485 -102306635 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 991 364 295 143 17 chr4 53323657 53323895 -102306225 - MLT1B LTR MaLR 0 390 123 4 991 249 313 92 76 chr4 53324022 53324271 -102305849 - L2b LINE L2 -55 3320 3068 4 991 724 274 59 59 chr4 53324687 53324959 -102305161 + B4A SINE B4 1 272 -20 4 991 306 0 0 0 chr4 53324974 53325008 -102305112 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 991 774 223 79 46 chr4 53326339 53326579 -102303541 + B4A SINE B4 2 249 -43 4 991 1321 78 21 0 chr4 53327475 53327666 -102302454 + L1_Mus3 LINE L1 6407 6601 -37 4 991 545 281 83 39 chr4 53329438 53329668 -102300452 + B4A SINE B4 1 240 -52 4 991 294 180 0 0 chr4 53329791 53329852 -102300268 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 991 309 89 0 0 chr4 53330840 53330885 -102299235 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 991 243 179 0 0 chr4 53330885 53330952 -102299168 + GA-rich Low_complexity Low_complexity 2 68 0 5 991 339 322 27 90 chr4 53331015 53331203 -102298917 + MIR3 SINE MIR 9 185 -23 5 991 521 263 60 44 chr4 53331879 53332062 -102298058 - MLT1H2 LTR MaLR -5 484 299 5 991 319 249 136 32 chr4 53332326 53332539 -102297581 + L1MD LINE L1 4453 4693 -1453 5 991 233 307 77 32 chr4 53332553 53332708 -102297412 + L1M5 LINE L1 5761 5922 -522 5 991 379 290 156 18 chr4 53332761 53333088 -102297032 + L1MD LINE L1 4810 5181 -965 5 991 456 191 0 0 chr4 53333597 53333691 -102296429 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 991 223 327 0 10 chr4 53333773 53333875 -102296245 + (CAGGA)n Simple_repeat Simple_repeat 3 103 0 5 991 296 330 17 0 chr4 53333882 53334000 -102296120 + L1M5 LINE L1 5555 5674 -450 5 991 885 314 33 0 chr4 53334969 53335240 -102294880 + B4 SINE B4 2 281 -11 5 991 192 125 0 0 chr4 53335254 53335286 -102294834 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 991 241 277 31 0 chr4 53335289 53335354 -102294766 + GA-rich Low_complexity Low_complexity 3 69 0 5 991 521 68 14 0 chr4 53335361 53335435 -102294685 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 5 991 235 230 23 160 chr4 53335514 53335675 -102294445 - MIRb SINE MIR -19 243 100 5 991 1196 54 0 20 chr4 53336529 53336680 -102293440 + B1_Mus1 SINE Alu 1 148 0 5 991 284 330 17 35 chr4 53337102 53337218 -102292902 + MER63B DNA AcHobo 317 430 -6 5 991 8253 36 5 3 chr4 53337598 53338653 -102291467 - L1Md_F3 LINE L1 -14 6570 5514 5 991 216 238 0 0 chr4 53338967 53339009 -102291111 + GA-rich Low_complexity Low_complexity 3 44 0 5 991 652 204 114 0 chr4 53339122 53339254 -102290866 + B1_Mm SINE Alu 1 147 0 5 991 186 103 0 0 chr4 53339255 53339284 -102290836 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 991 335 180 30 3 chr4 53339700 53339776 -102290344 + B1F SINE Alu 40 116 -33 5 991 254 204 37 0 chr4 53339734 53339788 -102290332 + B4 SINE B4 164 219 -73 5 991 207 0 0 0 chr4 53339799 53339822 -102290298 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 991 4603 6 0 0 chr4 53341345 53341838 -102288282 - MT2_Mm LTR ERVL 0 493 1 5 991 321 0 0 0 chr4 53341838 53341876 -102288244 - MERVL-int LTR ERVL 0 5485 5448 5 991 362 167 46 35 chr4 53341876 53341963 -102288157 - ORR1A3-int LTR MaLR -1323 640 553 5 123 41379 16 14 0 chr4 53341963 53347250 -102282870 - MERVL-int LTR ERVL -125 5360 1 5 992 4617 4 0 0 chr4 53347250 53347743 -102282377 - MT2_Mm LTR ERVL 0 493 1 5 992 239 210 12 47 chr4 53347952 53348037 -102282083 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 5 992 254 314 187 14 chr4 53348278 53348417 -102281703 + ORR1D2 LTR MaLR 21 183 -187 5 992 567 318 140 8 chr4 53349736 53349993 -102280127 + B4 SINE B4 2 292 0 5 992 330 305 9 0 chr4 53349993 53350098 -102280022 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 992 391 168 0 21 chr4 53350406 53350503 -102279617 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 992 623 218 0 13 chr4 53351073 53351231 -102278889 + C-rich Low_complexity Low_complexity 1 156 0 5 992 259 310 35 0 chr4 53351593 53351680 -102278440 + B4A SINE B4 55 144 -148 5 992 261 0 0 0 chr4 53352865 53352894 -102277226 + (C)n Simple_repeat Simple_repeat 1 29 0 5 992 368 371 27 14 chr4 53352998 53353309 -102276811 + MLT1F2 LTR MaLR 244 565 -4 5 992 1881 114 7 0 chr4 53354170 53354459 -102275661 + ORR1A2 LTR MaLR 1 291 -36 5 992 954 28 0 0 chr4 53354459 53354566 -102275554 - L1Md_T LINE L1 -444 6138 6032 5 992 3773 34 0 0 chr4 53354566 53355003 -102275117 + L1Md_T LINE L1 6145 6581 -1 5 992 261 261 15 0 chr4 53355018 53355152 -102274968 + ORR1B1-int LTR MaLR 619 754 -755 5 992 1061 43 7 0 chr4 53355050 53355191 -102274929 + B1_Mus1 SINE Alu 7 148 0 5 992 323 128 0 0 chr4 53355212 53355259 -102274861 + ORR1A3 LTR MaLR 272 318 -8 5 992 1562 146 178 0 chr4 53355311 53355620 -102274500 + ORR1B1 LTR MaLR 23 386 -8 5 992 639 123 16 8 chr4 53355731 53355854 -102274266 + (ATG)n Simple_repeat Simple_repeat 1 124 0 5 992 705 236 80 38 chr4 53355856 53356094 -102274026 + L1MB3 LINE L1 5933 6180 -3 5 992 275 284 12 0 chr4 53356581 53356662 -102273458 - MLT2E LTR ERVL 0 563 482 5 992 842 266 61 50 chr4 53357005 53357266 -102272854 + B4 SINE B4 4 267 -25 5 992 195 42 0 0 chr4 53357266 53357290 -102272830 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 992 672 13 0 0 chr4 53357290 53357366 -102272754 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 992 1451 221 94 21 chr4 53358799 53359058 -102271062 - MTD LTR MaLR -7 412 125 5 992 884 98 0 8 chr4 53359058 53359192 -102270928 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 5 992 1451 221 94 21 chr4 53359192 53359316 -102270804 - MTD LTR MaLR -295 124 2 5 992 216 189 0 0 chr4 53359384 53359421 -102270699 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 5 992 1114 281 27 34 chr4 53359437 53359805 -102270315 + L1MB7 LINE L1 5738 6101 -83 5 992 2326 131 30 3 chr4 53359805 53360173 -102269947 + ORR1C1 LTR MaLR 1 378 0 5 992 1114 281 27 34 chr4 53360173 53360249 -102269871 + L1MB7 LINE L1 6102 6179 -5 5 992 1762 170 26 48 chr4 53360679 53361098 -102269022 - RMER17C LTR ERVK 0 410 1 5 992 1004 212 3 24 chr4 53361120 53361418 -102268702 + CT-rich Low_complexity Low_complexity 1 291 0 5 992 27 0 0 0 chr4 53361514 53361541 -102268579 + AT_rich Low_complexity Low_complexity 1 27 0 5 992 360 228 67 29 chr4 53361557 53361661 -102268459 - B3A SINE B2 -90 108 1 5 992 1178 68 0 0 chr4 53361730 53361877 -102268243 + B1_Mus1 SINE Alu 2 148 0 5 992 1509 272 64 16 chr4 53361884 53362441 -102267679 + L1MA4 LINE L1 5364 5941 -359 5 992 1021 97 20 7 chr4 53362578 53362724 -102267396 + B1_Mur4 SINE Alu 2 149 -1 5 992 785 224 18 101 chr4 53362800 53363028 -102267092 + B3A SINE B2 8 216 0 5 992 328 320 63 24 chr4 53363277 53363482 -102266638 - MIRc SINE MIR -47 221 9 5 992 272 252 82 48 chr4 53364217 53364363 -102265757 - MER117 DNA MER1_type -1 196 46 5 992 182 359 0 0 chr4 53364507 53364560 -102265560 + L2a LINE L2 3347 3399 -27 5 992 326 343 14 34 chr4 53364846 53364994 -102265126 + MLT1A0 LTR MaLR 8 152 -213 5 992 322 323 15 37 chr4 53365250 53365385 -102264735 - MIRb SINE MIR -127 141 10 5 992 738 255 138 70 chr4 53365640 53366066 -102264054 + RLTR12B LTR ERVK 42 496 -32 5 992 191 400 53 0 chr4 53366295 53366390 -102263730 + L2b LINE L2 3258 3357 -18 5 992 463 277 76 50 chr4 53369375 53369573 -102260547 - MER20 DNA MER1_type -9 210 8 5 992 696 226 0 0 chr4 53369580 53369713 -102260407 + B1_Mur2 SINE Alu 17 149 0 5 992 265 297 95 43 chr4 53369732 53369848 -102260272 - MER63A DNA AcHobo -88 122 1 5 992 381 276 142 70 chr4 53370031 53370276 -102259844 + B4 SINE B4 42 274 -18 5 992 510 17 0 0 chr4 53370276 53370335 -102259785 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 992 520 291 377 6 chr4 53370575 53370888 -102259232 - L4 LINE RTE -1312 717 289 5 992 495 0 0 0 chr4 53371156 53371211 -102258909 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 992 240 370 35 86 chr4 53371217 53371415 -102258705 - LTR89 LTR ERVL? -335 544 357 5 992 1085 270 25 60 chr4 53371624 53371990 -102258130 - ORR1E LTR MaLR -2 357 5 5 992 523 174 9 9 chr4 53372281 53372397 -102257723 + CT-rich Low_complexity Low_complexity 3 118 0 5 992 749 201 36 0 chr4 53372412 53372551 -102257569 - B1_Mur2 SINE Alu -5 144 1 5 992 298 289 0 0 chr4 53374204 53374287 -102255833 - ID4 SINE ID 0 83 1 5 992 187 343 0 15 chr4 53374291 53374359 -102255761 - L2 LINE L2 -603 2816 2750 5 992 299 259 122 88 chr4 53374667 53374815 -102255305 + RMER20B LTR ERVK 2 154 -473 5 992 266 208 130 0 chr4 53375185 53375262 -102254858 - BC1_Mm scRNA scRNA -65 87 1 5 992 830 138 0 14 chr4 53375262 53375409 -102254711 + CT-rich Low_complexity Low_complexity 1 145 0 5 992 788 163 0 0 chr4 53375447 53375576 -102254544 - B3 SINE B2 -86 130 2 5 992 804 261 60 5 chr4 53375576 53375775 -102254345 - ORR1D2 LTR MaLR -160 210 1 5 992 922 248 174 6 chr4 53375796 53376113 -102254007 - ORR1D2 LTR MaLR 0 370 1 5 992 234 290 220 28 chr4 53376186 53376441 -102253679 + MER46C DNA MER2_type 16 319 -19 5 992 280 324 101 11 chr4 53376525 53376703 -102253417 - MIR SINE MIR -27 235 42 5 992 758 93 0 0 chr4 53376880 53376988 -102253132 - B1_Mus2 SINE Alu 0 147 40 5 992 258 214 0 0 chr4 53376991 53377047 -102253073 + CT-rich Low_complexity Low_complexity 2 57 0 5 992 337 213 0 28 chr4 53377047 53377226 -102252894 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 5 992 292 93 36 36 chr4 53377227 53377283 -102252837 - B1_Mus1 SINE Alu -88 60 5 5 992 393 299 54 16 chr4 53377336 53377465 -102252655 + ID_B1 SINE B4 90 223 -1 5 992 527 346 24 28 chr4 53377498 53377751 -102252369 - B4A SINE B4 -37 255 4 5 992 1269 96 17 0 chr4 53377783 53377960 -102252160 + B2_Mm1t SINE B2 2 181 -12 5 992 414 0 0 0 chr4 53378070 53378116 -102252004 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 5 992 21 0 0 0 chr4 53378117 53378138 -102251982 + AT_rich Low_complexity Low_complexity 1 21 0 5 992 995 259 124 16 chr4 53378184 53378490 -102251630 - MTD LTR MaLR 0 419 81 5 992 386 20 0 19 chr4 53378808 53378860 -102251260 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 992 746 281 163 0 chr4 53378883 53379129 -102250991 - B4A SINE B4 -6 286 1 5 992 9063 89 16 3 chr4 53379204 53381340 -102248780 + L1VL4 LINE L1 1 2090 -1469 5 992 7510 91 19 28 chr4 53381342 53381889 -102248231 + L1_Mus4 LINE L1 5316 5841 -42 5 992 810 53 219 0 chr4 53381889 53382003 -102248117 - B1_Mus1 SINE Alu -8 140 2 5 992 7510 65 20 55 chr4 53382003 53382801 -102247319 + L1_Mus4 LINE L1 5835 6632 -4 5 992 743 114 22 17 chr4 53383271 53383449 -102246671 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 992 460 227 35 17 chr4 53383464 53383817 -102246303 + (TG)n Simple_repeat Simple_repeat 1 359 0 6 992 344 175 39 16 chr4 53383824 53383952 -102246168 + (TATG)n Simple_repeat Simple_repeat 1 131 0 6 992 284 192 124 31 chr4 53384022 53384151 -102245969 + MER20B DNA MER1_type 593 733 -50 6 992 208 246 35 0 chr4 53384345 53384402 -102245718 + GA-rich Low_complexity Low_complexity 4 62 0 6 992 300 111 0 0 chr4 53384492 53384537 -102245583 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 6 992 775 193 0 40 chr4 53384924 53385075 -102245045 - B1_Mus1 SINE Alu -1 147 3 6 992 281 206 0 0 chr4 53385568 53385631 -102244489 - L1M4b LINE L1 -5795 1539 1477 6 992 237 43 0 60 chr4 53385823 53385873 -102244247 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 6 992 1154 82 0 0 chr4 53385896 53386043 -102244077 - B1_Mus1 SINE Alu 0 148 2 6 992 22 0 0 0 chr4 53386483 53386505 -102243615 + AT_rich Low_complexity Low_complexity 1 22 0 6 992 264 307 50 0 chr4 53386591 53386692 -102243428 - MIR SINE MIR -66 142 37 6 992 441 0 0 0 chr4 53386770 53386819 -102243301 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 992 241 309 39 49 chr4 53387161 53387263 -102242857 - L2c LINE L2 -14 3373 3273 6 992 1160 82 0 0 chr4 53387509 53387656 -102242464 + B1_Mus1 SINE Alu 1 147 -1 6 992 254 268 28 14 chr4 53387669 53387741 -102242379 - RSINE1 SINE B4 -91 74 2 6 992 883 269 77 4 chr4 53387789 53388061 -102242059 + B4A SINE B4 1 292 0 6 992 284 231 13 0 chr4 53388071 53388149 -102241971 + GA-rich Low_complexity Low_complexity 2 80 0 6 992 398 81 0 31 chr4 53388298 53388310 -102241810 + (TCC)n Simple_repeat Simple_repeat 2 13 0 6 992 1263 84 0 0 chr4 53388310 53388488 -102241632 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 6 992 398 81 0 31 chr4 53388488 53388539 -102241581 + (TCC)n Simple_repeat Simple_repeat 3 52 0 6 992 290 215 84 21 chr4 53388567 53388662 -102241458 - Lx9 LINE L1 0 7644 7544 6 992 314 198 198 0 chr4 53390460 53390551 -102239569 - B1F SINE Alu -5 144 36 6 992 396 0 0 0 chr4 53391535 53391579 -102238541 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 992 1901 198 45 22 chr4 53391579 53392126 -102237994 - RMER13B LTR ERVK -1 907 181 6 992 802 205 37 19 chr4 53392126 53392340 -102237780 - RMER13B LTR ERVK -686 222 5 6 992 371 346 59 0 chr4 53393189 53393276 -102236844 - B3 SINE B2 -53 163 76 6 992 3901 53 2 6 chr4 53393276 53393766 -102236354 - L1_Mus1 LINE L1 -1 6566 6079 6 992 371 346 59 0 chr4 53393766 53393831 -102236289 - B3 SINE B2 -141 75 3 6 992 200 31 0 59 chr4 53394128 53394162 -102235958 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 6 992 733 115 24 32 chr4 53395839 53395965 -102234155 - B1_Mur4 SINE Alu -16 134 10 6 992 970 213 34 10 chr4 53396028 53396232 -102233888 - B3 SINE B2 -7 209 1 6 992 21 0 0 0 chr4 53396278 53396299 -102233821 + AT_rich Low_complexity Low_complexity 1 21 0 6 992 563 207 63 14 chr4 53396299 53396441 -102233679 + MLT2D LTR ERVL 8 156 -258 6 992 757 79 9 9 chr4 53396688 53396803 -102233317 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 6 992 200 246 91 15 chr4 53396862 53396928 -102233192 + MIR SINE MIR 113 183 -79 6 992 313 200 23 12 chr4 53398246 53398332 -102231788 + GA-rich Low_complexity Low_complexity 1 87 0 6 992 363 346 46 73 chr4 53398985 53399312 -102230808 + LTR89 LTR ERVL? 551 868 -11 6 992 38771 30 0 0 chr4 53399666 53405975 -102224145 - L1Md_T LINE L1 0 6585 217 6 992 364 290 23 39 chr4 53406186 53406315 -102223805 + L4 LINE RTE 1354 1480 -549 6 992 1020 111 0 0 chr4 53406851 53407013 -102223107 + (TG)n Simple_repeat Simple_repeat 2 163 0 6 992 552 218 44 22 chr4 53407018 53407154 -102222966 - B3A SINE B2 -44 154 16 6 992 583 299 25 6 chr4 53407519 53407677 -102222443 + RSINE1 SINE B4 4 164 -1 6 992 685 223 0 63 chr4 53407991 53408149 -102221971 + B1F1 SINE Alu 1 148 -1 6 992 662 345 28 28 chr4 53408197 53408486 -102221634 + B4A SINE B4 1 289 -3 6 992 221 346 80 6 chr4 53408746 53408909 -102221211 - MIRb SINE MIR -47 221 47 6 992 482 246 62 47 chr4 53410266 53410394 -102219726 - ORR1E LTR MaLR -113 246 117 6 992 267 31 0 0 chr4 53410394 53410426 -102219694 + (A)n Simple_repeat Simple_repeat 1 32 0 6 992 524 282 67 5 chr4 53410888 53411098 -102219022 + ID_B1 SINE B4 1 223 -1 6 992 423 0 0 0 chr4 53411853 53411900 -102218220 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 992 423 0 0 0 chr4 53411901 53411948 -102218172 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 992 273 241 0 0 chr4 53411952 53412064 -102218056 + (TG)n Simple_repeat Simple_repeat 1 112 0 6 992 627 192 0 0 chr4 53412084 53412251 -102217869 + (TG)n Simple_repeat Simple_repeat 2 168 0 6 992 309 187 0 0 chr4 53412272 53412347 -102217773 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 992 282 280 90 14 chr4 53412354 53412499 -102217621 - ORR1E LTR MaLR -34 325 170 6 992 814 266 18 27 chr4 53412604 53412828 -102217292 - B4 SINE B4 -64 228 7 6 992 646 219 29 14 chr4 53413923 53414062 -102216058 - RSINE1 SINE B4 -23 142 2 6 992 255 278 0 0 chr4 53414098 53414152 -102215968 + ID4_ SINE ID 14 67 -16 6 992 880 302 128 18 chr4 53414199 53414651 -102215469 - RMER5 LTR ERV1 0 534 33 6 992 370 306 56 0 chr4 53414962 53415070 -102215050 - MLT1B LTR MaLR -249 141 28 6 992 624 27 0 0 chr4 53415418 53415492 -102214628 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 992 240 35 0 0 chr4 53415516 53415545 -102214575 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 992 470 204 36 36 chr4 53415547 53415659 -102214461 - B1_Mur3 SINE Alu -13 136 25 6 992 360 0 0 0 chr4 53415877 53415917 -102214203 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 992 450 65 0 0 chr4 53416169 53416231 -102213889 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 992 279 298 48 9 chr4 53416407 53416512 -102213608 - B4A SINE B4 -169 123 15 6 992 3361 34 60 84 chr4 53416644 53417131 -102212989 - IAPLTR2_Mm LTR ERVK 0 475 1 6 992 225 293 0 17 chr4 53417675 53417734 -102212386 + G-rich Low_complexity Low_complexity 3 60 0 6 992 291 206 30 71 chr4 53418547 53418630 -102211490 + MLT1A1 LTR MaLR 3 81 -284 6 992 355 269 87 85 chr4 53418630 53418936 -102211184 + B4 SINE B4 1 291 -1 6 992 213 154 0 0 chr4 53418958 53418997 -102211123 + (CAT)n Simple_repeat Simple_repeat 1 39 0 6 992 290 280 27 114 chr4 53419015 53419090 -102211030 + MLT1A1 LTR MaLR 80 148 -217 6 992 804 261 23 5 chr4 53419090 53419306 -102210814 + ID_B1 SINE B4 2 221 -3 6 992 290 280 27 114 chr4 53419306 53419379 -102210741 + MLT1A1 LTR MaLR 149 215 -150 6 992 435 268 9 9 chr4 53419390 53419503 -102210617 + RSINE1 SINE B4 2 114 -51 6 992 502 161 48 14 chr4 53419573 53419589 -102210531 + polypurine Low_complexity Low_complexity 2 17 0 6 992 1172 74 0 0 chr4 53419589 53419737 -102210383 + B1_Mus1 SINE Alu 1 148 0 6 992 502 161 48 14 chr4 53419737 53419865 -102210255 + GA-rich Low_complexity Low_complexity 18 150 0 6 992 355 188 51 20 chr4 53419875 53419971 -102210149 + MLT1A1 LTR MaLR 274 372 -36 6 992 822 103 16 0 chr4 53419971 53420097 -102210023 + B2_Mm2 SINE B2 2 129 -66 6 992 251 356 15 15 chr4 53420178 53420312 -102209808 - LTR82B Low_complexity ERVL 0 830 697 6 992 3290 60 2 0 chr4 53420652 53421051 -102209069 - MTB LTR MaLR 0 400 1 6 992 897 174 102 31 chr4 53421112 53421308 -102208812 + B3 SINE B2 2 211 -5 6 992 244 338 47 20 chr4 53421320 53421468 -102208652 - LTR82B Low_complexity ERVL -548 282 131 6 992 395 265 39 0 chr4 53422927 53423029 -102207091 - ID_B1 SINE B4 -16 208 103 6 992 839 133 0 6 chr4 53423180 53423346 -102206774 + (TC)n Simple_repeat Simple_repeat 1 165 0 6 992 1072 241 24 41 chr4 53423859 53424153 -102205967 + B4 SINE B4 1 289 -3 6 992 486 0 0 0 chr4 53424184 53424238 -102205882 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 992 897 250 5 24 chr4 53424238 53424447 -102205673 + B3 SINE B2 3 207 -9 6 992 2172 33 0 22 chr4 53424519 53424795 -102205325 + L1Md_F3 LINE L1 6315 6584 0 6 992 700 208 87 31 chr4 53425072 53425270 -102204850 - MTD LTR MaLR -14 405 178 6 992 727 269 25 20 chr4 53425277 53425478 -102204642 - B3 SINE B2 -7 209 8 6 992 599 274 29 38 chr4 53425475 53425659 -102204461 - MTD LTR MaLR -217 202 20 6 992 873 131 0 0 chr4 53425755 53425908 -102204212 + (TG)n Simple_repeat Simple_repeat 2 154 0 6 992 513 257 35 21 chr4 53425914 53426057 -102204063 - RSINE1 SINE B4 -19 146 2 6 992 870 255 28 8 chr4 53426556 53426805 -102203315 + L1MC LINE L1 4765 5018 -1128 6 992 291 175 0 0 chr4 53427909 53427966 -102202154 + GA-rich Low_complexity Low_complexity 3 59 0 6 992 726 144 16 8 chr4 53428273 53428399 -102201721 + B1_Mur3 SINE Alu 17 143 -6 6 992 2361 231 98 11 chr4 53428396 53429040 -102201080 - RCHARR1 DNA MER1_type -233 741 42 6 992 468 62 37 0 chr4 53429155 53429236 -102200884 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 992 192 77 0 0 chr4 53429237 53429263 -102200857 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 6 992 21 0 0 0 chr4 53430504 53430525 -102199595 + AT_rich Low_complexity Low_complexity 1 21 0 6 992 1866 159 49 62 chr4 53430652 53431054 -102199066 - RMER6A LTR ERVK -3 753 348 6 992 321 26 0 0 chr4 53431054 53431092 -102199028 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 992 1866 159 49 62 chr4 53431092 53431139 -102198981 - RMER6A LTR ERVK -409 347 310 6 992 327 233 32 24 chr4 53431143 53431266 -102198854 - L1M4b LINE L1 -5221 2113 1990 6 992 2778 299 119 44 chr4 53431274 53432847 -102197273 - L1M4b LINE L1 -5523 1811 121 6 992 624 246 14 7 chr4 53433026 53433169 -102196951 + RSINE1 SINE B4 3 146 -19 6 992 1133 98 57 11 chr4 53433663 53433838 -102196282 - B2_Mm1t SINE B2 -9 184 2 6 992 1228 21 0 0 chr4 53434061 53434202 -102195918 - B1_Mus1 SINE Alu -6 142 2 6 992 432 0 0 0 chr4 53434696 53434744 -102195376 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 6 992 818 256 15 5 chr4 53434744 53434940 -102195180 - B3 SINE B2 -18 198 1 7 992 294 29 0 0 chr4 53435165 53435200 -102194920 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 992 192 217 0 0 chr4 53436459 53436505 -102193615 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 992 735 199 64 6 chr4 53436505 53436677 -102193443 - B3A SINE B2 -16 182 1 7 992 269 273 10 93 chr4 53436982 53437079 -102193041 + RLTR25A LTR ERVK 500 588 -515 7 992 687 151 0 0 chr4 53436998 53437104 -102193016 + B1_Mur3 SINE Alu 36 141 -8 7 992 189 0 0 0 chr4 53437134 53437155 -102192965 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 992 456 19 0 0 chr4 53437155 53437207 -102192913 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 992 234 62 0 0 chr4 53437811 53437843 -102192277 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 992 529 260 55 0 chr4 53437843 53437970 -102192150 - B1_Mur2 SINE Alu -11 138 5 7 992 751 267 9 47 chr4 53438004 53438216 -102191904 + B3 SINE B2 1 204 -12 7 992 240 35 0 0 chr4 53438216 53438245 -102191875 + (TAA)n Simple_repeat Simple_repeat 2 30 0 7 992 505 263 77 0 chr4 53438696 53438852 -102191268 - L1M5 LINE L1 -413 5711 5544 7 992 987 59 0 14 chr4 53439028 53439166 -102190954 + B1_Mus1 SINE Alu 13 148 0 7 992 200 93 0 44 chr4 53439170 53439215 -102190905 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 992 411 308 89 5 chr4 53439732 53439934 -102190186 + B4A SINE B4 1 219 -73 7 992 669 271 41 0 chr4 53439941 53440111 -102190009 + B3A SINE B2 1 177 -21 7 992 315 270 26 43 chr4 53440863 53440979 -102189141 + B1F1 SINE Alu 19 132 -17 7 992 261 118 0 0 chr4 53440981 53441032 -102189088 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 7 992 262 283 0 0 chr4 53441032 53441092 -102189028 + ID4 SINE ID 8 67 -16 7 992 2677 216 51 34 chr4 53441899 53442550 -102187570 + RMER1B Other Other 401 1062 -4 7 992 501 310 28 75 chr4 53444111 53444324 -102185796 + ID_B1 SINE B4 21 223 -1 7 992 1251 40 0 0 chr4 53444510 53444658 -102185462 - B1_Mus1 SINE Alu 0 148 1 7 992 801 270 189 16 chr4 53444660 53444972 -102185148 + MLT1G3 LTR MaLR 50 415 -180 7 992 746 243 56 32 chr4 53445443 53445694 -102184426 - RMER15 LTR ERVL -3 572 316 7 992 352 258 120 70 chr4 53445735 53445811 -102184309 + MLT1A1 LTR MaLR 256 336 -72 7 992 180 0 0 0 chr4 53445811 53445831 -102184289 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 992 1135 43 0 21 chr4 53445831 53445974 -102184146 - B1_Mus1 SINE Alu -7 141 2 7 992 352 258 120 70 chr4 53445974 53446038 -102184082 + MLT1A1 LTR MaLR 337 403 -5 7 992 600 53 0 0 chr4 53446095 53446171 -102183949 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 992 21 0 0 0 chr4 53446185 53446206 -102183914 + AT_rich Low_complexity Low_complexity 1 21 0 7 992 1254 207 78 78 chr4 53446219 53446591 -102183529 + ORR1D1 LTR MaLR 1 372 -2 7 992 516 303 88 6 chr4 53446779 53447064 -102183056 - L1M5 LINE L1 -541 5653 5349 7 992 327 291 0 60 chr4 53447307 53447424 -102182696 + RSINE1 SINE B4 49 158 -7 7 992 234 105 0 0 chr4 53447432 53447470 -102182650 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 992 953 233 173 25 chr4 53447791 53448068 -102182052 - MTE2b LTR MaLR -61 318 1 7 992 248 222 0 0 chr4 53448179 53448233 -102181887 - L1MB2 LINE L1 -1 6170 6117 7 992 1244 48 0 0 chr4 53448663 53448810 -102181310 - B1_Mus2 SINE Alu 0 147 1 7 992 1367 95 10 10 chr4 53449070 53449262 -102180858 + B2_Mm1t SINE B2 2 193 0 7 992 2387 120 0 0 chr4 53449447 53449773 -102180347 + ORR1A3 LTR MaLR 1 326 0 7 992 243 0 0 0 chr4 53450237 53450264 -102179856 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 992 186 71 0 0 chr4 53450584 53450612 -102179508 + (A)n Simple_repeat Simple_repeat 1 28 0 7 992 195 69 0 0 chr4 53450839 53450868 -102179252 + (C)n Simple_repeat Simple_repeat 1 29 0 7 992 248 226 0 0 chr4 53453202 53453264 -102176856 + G-rich Low_complexity Low_complexity 4 65 0 7 992 234 62 0 0 chr4 53453330 53453362 -102176758 + (CCG)n Simple_repeat Simple_repeat 1 32 0 7 992 209 161 0 0 chr4 53453411 53453442 -102176678 + (CCG)n Simple_repeat Simple_repeat 1 31 0 7 992 24 53 0 0 chr4 53453448 53453486 -102176634 + GC_rich Low_complexity Low_complexity 1 38 0 7 992 191 146 24 0 chr4 53457181 53457222 -102172898 + GA-rich Low_complexity Low_complexity 6 47 0 7 992 428 195 174 25 chr4 53457592 53457713 -102172407 + B1F SINE Alu 10 148 -1 7 992 2979 77 23 8 chr4 53458255 53458649 -102171471 + MTB LTR MaLR 1 400 0 7 992 525 250 36 7 chr4 53458903 53459040 -102171080 - MER5B DNA MER1_type -6 172 32 7 992 714 24 0 0 chr4 53459731 53459815 -102170305 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 7 992 987 59 88 0 chr4 53459816 53459952 -102170168 - B1_Mus1 SINE Alu 0 148 1 7 992 394 328 72 72 chr4 53460080 53460343 -102169777 + MER58B DNA MER1_type 1 263 -78 7 992 491 282 184 0 chr4 53460749 53460983 -102169137 - B4 SINE B4 -14 278 2 7 992 180 111 0 0 chr4 53460986 53461013 -102169107 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 7 992 1000 86 43 7 chr4 53461013 53461025 -102169095 - B1_Mus2 SINE Alu 0 147 136 7 992 378 0 0 0 chr4 53461025 53461067 -102169053 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 992 1000 86 43 7 chr4 53461067 53461195 -102168925 - B1_Mus2 SINE Alu -12 135 2 7 992 216 301 71 61 chr4 53461530 53461629 -102168491 - B1F SINE Alu -20 100 1 7 992 480 149 37 0 chr4 53461675 53461782 -102168338 + CT-rich Low_complexity Low_complexity 3 113 0 7 992 1113 58 22 0 chr4 53461785 53461922 -102168198 - B1_Mus1 SINE Alu -5 143 4 7 992 634 193 169 0 chr4 53462039 53462205 -102167915 - RMER30 DNA MER1_type -8 194 1 7 992 1265 21 7 0 chr4 53462742 53462887 -102167233 - B1_Mm SINE Alu -1 146 1 7 992 469 244 39 8 chr4 53463500 53463628 -102166492 - RSINE1 SINE B4 -33 132 1 7 992 369 264 60 52 chr4 53464973 53465156 -102164964 - ORR1E LTR MaLR -165 194 12 7 992 253 293 12 0 chr4 53465444 53465526 -102164594 + RSINE1 SINE B4 73 155 -10 7 992 261 0 0 0 chr4 53465767 53465796 -102164324 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 992 183 162 0 0 chr4 53466301 53466338 -102163782 + C-rich Low_complexity Low_complexity 1 37 0 7 992 682 205 128 64 chr4 53466553 53466756 -102163364 + B3 SINE B2 1 216 0 7 992 796 140 51 7 chr4 53466923 53467060 -102163060 - B1_Mur3 SINE Alu -5 144 2 7 992 326 235 11 76 chr4 53466978 53467070 -102163050 - MT2B2 LTR ERVL -344 240 155 7 992 226 263 26 0 chr4 53467070 53467082 -102163038 - ORR1E-int LTR MaLR -769 694 624 7 992 1107 183 59 5 chr4 53467092 53467295 -102162825 - B3 SINE B2 -1 215 2 7 992 224 333 20 40 chr4 53467295 53467395 -102162725 - RSINE1 SINE B4 -65 100 3 7 992 491 200 200 0 chr4 53467593 53467723 -102162397 + URR1A DNA MER1_type 1 156 -70 7 992 539 126 15 7 chr4 53467726 53467837 -102162283 - B1_Mur4 SINE Alu 0 150 6 7 992 424 56 139 0 chr4 53467848 53467920 -102162200 + URR1A DNA MER1_type 144 225 -1 7 992 186 43 0 0 chr4 53468034 53468057 -102162063 + (TATG)n Simple_repeat Simple_repeat 4 26 0 7 992 30 0 0 0 chr4 53468259 53468289 -102161831 + AT_rich Low_complexity Low_complexity 1 30 0 7 992 348 319 165 21 chr4 53469405 53469684 -102160436 - HAL1 LINE L1 -86 2421 2103 7 992 243 0 0 0 chr4 53469740 53469767 -102160353 + (T)n Simple_repeat Simple_repeat 1 27 0 7 992 265 272 96 24 chr4 53469979 53470062 -102160058 - PB1D10 SINE Alu -23 94 6 7 992 1083 94 0 0 chr4 53470203 53470383 -102159737 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 992 1008 111 0 0 chr4 53470397 53470577 -102159543 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 992 212 286 111 0 chr4 53470954 53471017 -102159103 - B3A SINE B2 -119 79 10 7 992 264 329 0 0 chr4 53471538 53471617 -102158503 - ID4_ SINE ID 0 83 5 7 992 1147 15 0 0 chr4 53473155 53473285 -102156835 + B1_Mus2 SINE Alu 2 131 -16 7 992 576 187 9 0 chr4 53474357 53474464 -102155656 + B1F SINE Alu 29 136 -13 7 992 322 306 51 0 chr4 53475150 53475248 -102154872 - B1F2 SINE Alu -40 109 7 7 992 292 317 66 45 chr4 53475619 53475817 -102154303 - Charlie13a DNA Charlie -445 1069 868 7 992 822 268 52 23 chr4 53475944 53476250 -102153870 - Charlie13a DNA Charlie -880 634 320 7 992 223 333 13 0 chr4 53476250 53476328 -102153792 - L2a LINE L2 -3 3423 3345 7 992 198 71 0 0 chr4 53476448 53476476 -102153644 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 992 560 247 173 0 chr4 53476685 53476847 -102153273 + B3A SINE B2 3 192 -6 7 992 680 80 10 0 chr4 53476929 53477029 -102153091 + (TCTA)n Simple_repeat Simple_repeat 3 103 0 7 15 683 326 127 32 chr4 53477094 53477695 -102152425 - Tigger9a DNA Tigger 0 732 75 7 993 246 377 0 13 chr4 53477821 53477899 -102152221 + ID2 SINE ID 1 77 -6 7 993 403 308 83 0 chr4 53477961 53478094 -102152026 + B1F SINE Alu 6 149 0 7 993 745 243 69 5 chr4 53478184 53478387 -102151733 + B3 SINE B2 1 216 0 7 993 274 214 0 0 chr4 53478967 53479026 -102151094 + ID_B1 SINE B4 83 141 -151 7 993 644 122 203 0 chr4 53479031 53479154 -102150966 - B1_Mus1 SINE Alu 0 148 1 7 993 180 0 0 0 chr4 53479155 53479175 -102150945 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 993 188 0 74 0 chr4 53479401 53479428 -102150692 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 7 993 1183 41 0 14 chr4 53479574 53479722 -102150398 - B1_Mus2 SINE Alu 0 147 2 7 993 581 266 11 58 chr4 53480453 53480641 -102149479 + RMER30 DNA MER1_type 2 180 -22 7 993 913 136 0 0 chr4 53480945 53481077 -102149043 - B1_Mus1 SINE Alu -16 132 1 7 993 371 221 0 17 chr4 53481136 53481248 -102148872 - B1_Mus2 SINE Alu 0 149 46 8 993 746 236 15 39 chr4 53481599 53481802 -102148318 + B3A SINE B2 1 198 0 8 993 445 298 121 43 chr4 53481979 53482326 -102147794 - L1MB8 LINE L1 -10 6168 5795 8 993 670 228 61 25 chr4 53482394 53482592 -102147528 - B3 SINE B2 -6 210 6 8 993 237 159 0 0 chr4 53482608 53482652 -102147468 + T-rich Low_complexity Low_complexity 1 44 0 8 993 1052 69 14 7 chr4 53482652 53482798 -102147322 - B1_Mm SINE Alu 0 147 1 8 993 477 308 57 19 chr4 53484503 53484662 -102145458 + B3A SINE B2 5 169 -29 8 993 221 180 20 0 chr4 53484679 53484729 -102145391 + (CAT)n Simple_repeat Simple_repeat 2 52 0 8 993 1186 214 5 0 chr4 53484862 53485072 -102145048 + B3 SINE B2 2 212 -4 8 993 23 33 0 0 chr4 53485076 53485106 -102145014 + AT_rich Low_complexity Low_complexity 1 30 0 8 993 275 263 80 10 chr4 53485302 53485402 -102144718 - L2a LINE L2 0 3426 3320 8 993 869 162 0 18 chr4 53486011 53486181 -102143939 + URR1B DNA MER1_type 59 225 0 8 993 202 246 49 0 chr4 53488328 53488389 -102141731 + L2c LINE L2 3270 3333 -54 8 993 756 107 0 0 chr4 53489335 53489447 -102140673 + (TG)n Simple_repeat Simple_repeat 1 112 0 8 993 229 237 111 20 chr4 53489512 53489611 -102140509 - L1M4c LINE L1 -5031 1353 1246 8 993 285 321 68 15 chr4 53490439 53490572 -102139548 + MIRb SINE MIR 35 174 -94 8 993 231 289 73 47 chr4 53491585 53491696 -102138424 - MIR SINE MIR -148 120 3 8 993 247 233 16 16 chr4 53491951 53492012 -102138108 - B4 SINE B4 0 292 232 8 993 378 107 0 0 chr4 53492021 53492077 -102138043 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 993 365 304 27 82 chr4 53492090 53492237 -102137883 - RSINE1 SINE B4 -14 151 13 8 993 514 317 27 16 chr4 53492231 53492414 -102137706 - B4A SINE B4 -58 234 50 8 993 596 220 45 159 chr4 53492452 53492609 -102137511 - B3 SINE B2 -6 210 50 8 993 986 225 128 6 chr4 53492918 53493245 -102136875 - Lx9 LINE L1 0 7644 7278 8 993 894 268 18 27 chr4 53493851 53494070 -102136050 + ID_B1 SINE B4 2 218 -6 8 993 232 297 32 63 chr4 53495176 53495302 -102134818 - MIR3 SINE MIR -24 184 63 8 993 466 284 30 7 chr4 53496324 53496459 -102133661 + RSINE1 SINE B4 11 148 -17 8 993 981 212 24 10 chr4 53496806 53497011 -102133109 - B3 SINE B2 -8 208 1 8 993 297 128 0 0 chr4 53497211 53497258 -102132862 + (T)n Simple_repeat Simple_repeat 1 47 0 8 993 816 35 0 66 chr4 53497258 53497380 -102132740 - B1_Mm SINE Alu 0 147 34 8 993 230 342 0 0 chr4 53497703 53497782 -102132338 - PB1D10 SINE Alu -36 81 3 8 993 350 189 19 104 chr4 53499611 53499717 -102130403 - PB1D10 SINE Alu 0 117 21 8 993 2398 55 52 0 chr4 53502225 53502534 -102127586 - L1_Mus1 LINE L1 0 6567 6243 1 993 216 301 88 47 chr4 53502767 53502938 -102127182 - MIRb SINE MIR -81 187 10 2 993 1660 216 76 37 chr4 53505485 53505971 -102124149 - RLTR16 LTR ERVK 0 505 1 3 993 933 169 157 4 chr4 53506011 53506272 -102123848 - MYSERV16_I-int LTR ERVK -21 2305 2005 3 993 1203 48 0 7 chr4 53506385 53506533 -102123587 - B1_Mus1 SINE Alu 0 148 2 4 993 306 0 0 0 chr4 53507090 53507124 -102122996 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 993 497 198 13 154 chr4 53507124 53507176 -102122944 - B1_Mur2 SINE Alu -11 138 102 6 993 1602 32 16 0 chr4 53507176 53507366 -102122754 - B2_Mm1t SINE B2 0 193 1 7 993 497 198 13 154 chr4 53507366 53507462 -102122658 - B1_Mur2 SINE Alu -48 101 11 6 993 264 317 30 61 chr4 53507881 53508012 -102122108 + L2b LINE L2 3029 3158 -229 8 993 330 293 101 25 chr4 53508171 53508290 -102121830 + L2b LINE L2 3267 3426 0 8 993 283 214 141 9 chr4 53508353 53508502 -102121618 - L1M1 LINE L1 -2296 5586 5417 9 993 340 232 55 22 chr4 53509054 53509165 -102120955 - MLT1E1A LTR MaLR -15 665 563 1 993 320 297 60 38 chr4 53509287 53509420 -102120700 - MLT1E1A LTR MaLR -410 150 15 1 993 293 233 144 10 chr4 53511262 53511366 -102118754 - MER2 DNA MER2_type -136 209 92 1 993 275 49 0 24 chr4 53511372 53511414 -102118706 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 993 242 0 61 0 chr4 53511789 53511822 -102118298 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 993 423 202 96 0 chr4 53512013 53512107 -102118013 - PB1D10 SINE Alu -1 116 14 1 993 762 179 15 0 chr4 53512363 53512497 -102117623 + B1_Mur1 SINE Alu 2 137 -12 1 993 387 0 0 0 chr4 53512526 53512569 -102117551 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 993 687 140 84 105 chr4 53512569 53512760 -102117360 + B2_Mm2 SINE B2 1 187 -8 1 993 186 167 0 0 chr4 53512911 53512947 -102117173 + T-rich Low_complexity Low_complexity 1 36 0 1 993 280 344 40 55 chr4 53513713 53513913 -102116207 - MLT1E3 LTR MaLR -157 470 274 1 993 1173 56 0 0 chr4 53514690 53514834 -102115286 + B1_Mm SINE Alu 2 145 -2 2 993 186 71 0 0 chr4 53514834 53514862 -102115258 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 993 549 44 0 0 chr4 53514979 53515047 -102115073 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 993 302 256 77 0 chr4 53515838 53515916 -102114204 - MER77 LTR ERVL -407 200 117 2 993 251 284 116 93 chr4 53516057 53516282 -102113838 - L1ME1 LINE L1 -13 6166 5937 2 993 209 182 0 0 chr4 53516282 53516315 -102113805 + polypyrimidine Low_complexity Low_complexity 2 34 0 2 993 693 232 0 0 chr4 53516364 53516532 -102113588 + T-rich Low_complexity Low_complexity 1 168 0 2 993 297 309 83 30 chr4 53516575 53516805 -102113315 - L1ME1 LINE L1 -302 5877 5636 2 993 247 281 89 32 chr4 53516816 53516974 -102113146 - L1ME1 LINE L1 -582 5582 5416 2 993 222 62 0 0 chr4 53517269 53517301 -102112819 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 993 642 248 8 0 chr4 53517303 53517424 -102112696 - B3A SINE B2 -67 131 10 2 993 459 0 0 0 chr4 53517484 53517535 -102112585 + (TCCCC)n Simple_repeat Simple_repeat 5 55 0 2 993 491 237 44 0 chr4 53517618 53517634 -102112486 - B4 SINE B4 -172 120 102 3 993 210 71 0 0 chr4 53517634 53517662 -102112458 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 3 993 491 237 44 0 chr4 53517662 53517759 -102112361 - B4 SINE B4 -191 101 3 3 993 506 286 160 38 chr4 53517759 53518072 -102112048 - L1ME1 LINE L1 -955 5191 4841 2 993 25 31 0 0 chr4 53518358 53518390 -102111730 + AT_rich Low_complexity Low_complexity 1 32 0 3 993 336 83 0 0 chr4 53518413 53518461 -102111659 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 993 447 68 0 0 chr4 53519140 53519199 -102110921 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 993 404 324 67 37 chr4 53519213 53519482 -102110638 - B4A SINE B4 -14 278 2 3 993 23 33 0 0 chr4 53519545 53519575 -102110545 + AT_rich Low_complexity Low_complexity 1 30 0 3 993 815 291 14 5 chr4 53519577 53519784 -102110336 - B3 SINE B2 -6 210 2 3 993 21 0 0 0 chr4 53520130 53520151 -102109969 + AT_rich Low_complexity Low_complexity 1 21 0 3 993 293 269 26 39 chr4 53521136 53521291 -102108829 + L1MB8 LINE L1 5322 5474 -710 3 993 329 169 0 0 chr4 53521298 53521357 -102108763 - L1M5 LINE L1 -378 5801 5743 4 993 836 269 43 18 chr4 53521392 53521718 -102108402 + L1MB8 LINE L1 5544 5877 -301 3 993 367 289 69 15 chr4 53521718 53521848 -102108272 + L1MB8 LINE L1 5981 6117 -67 3 993 342 198 0 131 chr4 53522011 53522110 -102108010 + PB1 SINE Alu 42 127 0 4 993 291 320 58 0 chr4 53522444 53522547 -102107573 - B3A SINE B2 -6 192 84 4 993 192 40 0 0 chr4 53522884 53522909 -102107211 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 993 517 255 7 14 chr4 53523510 53523653 -102106467 - B1F SINE Alu -7 142 1 4 993 290 324 36 0 chr4 53523863 53523974 -102106146 - L2a LINE L2 -43 3383 3269 4 993 852 46 0 0 chr4 53523999 53524108 -102106012 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 993 325 207 75 33 chr4 53524297 53524417 -102105703 - BC1_Mm scRNA scRNA -25 127 3 4 993 298 339 50 46 chr4 53525394 53525635 -102104485 + L2c LINE L2 2923 3164 -223 4 993 212 79 26 0 chr4 53526632 53526670 -102103450 - B3 SINE B2 -177 39 1 4 993 597 292 54 25 chr4 53527195 53527434 -102102686 - MER44A DNA MER2_type -92 247 2 5 993 473 184 64 0 chr4 53528132 53528257 -102101863 - RMER17B LTR ERVK -498 460 328 5 993 180 0 0 0 chr4 53528366 53528386 -102101734 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 993 455 230 52 17 chr4 53530750 53530865 -102099255 + PB1 SINE Alu 2 120 -7 5 993 273 228 59 89 chr4 53531040 53531141 -102098979 - PB1D10 SINE Alu 0 117 20 5 993 437 293 84 49 chr4 53532207 53532433 -102097687 + MIRc SINE MIR 3 236 -32 5 993 308 313 0 0 chr4 53533021 53533120 -102097000 + PB1D10 SINE Alu 3 101 -16 5 993 361 286 48 111 chr4 53533619 53533752 -102096368 + L1MB3 LINE L1 5030 5171 -975 5 993 367 271 46 9 chr4 53533752 53533860 -102096260 + PB1D10 SINE Alu 1 112 -5 5 993 361 286 48 111 chr4 53533860 53533978 -102096142 + L1MB3 LINE L1 5172 5264 -882 5 993 283 297 86 7 chr4 53534232 53534371 -102095749 + L1MB3 LINE L1 5624 5773 -395 5 993 602 322 38 19 chr4 53534456 53534823 -102095297 + L1MB3 LINE L1 5809 6182 -1 5 993 209 57 29 0 chr4 53534902 53534937 -102095183 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 5 993 24 77 0 0 chr4 53537238 53537290 -102092830 + AT_rich Low_complexity Low_complexity 1 52 0 6 993 886 159 14 7 chr4 53537395 53537541 -102092579 + B1_Mus1 SINE Alu 1 147 -1 6 993 757 161 201 54 chr4 53537566 53537750 -102092370 + B3 SINE B2 1 211 -5 6 993 215 209 0 23 chr4 53537768 53537812 -102092308 - L2b LINE L2 -4 3371 3329 6 993 240 220 0 20 chr4 53538816 53538867 -102091253 + CT-rich Low_complexity Low_complexity 1 50 0 6 993 402 21 0 0 chr4 53542281 53542328 -102087792 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 993 216 135 0 0 chr4 53542328 53542365 -102087755 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 993 417 314 29 22 chr4 53542794 53542931 -102087189 + ID_B1 SINE B4 80 217 -7 6 993 246 105 0 0 chr4 53543209 53543247 -102086873 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 993 427 284 0 9 chr4 53543253 53543363 -102086757 - PB1D9 SINE Alu -10 110 2 6 993 245 279 0 62 chr4 53543374 53543439 -102086681 - B3A SINE B2 -30 168 108 7 993 2484 139 10 13 chr4 53543852 53544245 -102085875 - ORR1B1 LTR MaLR -2 392 1 7 993 1146 81 116 0 chr4 53544299 53544472 -102085648 - B2_Mm1t SINE B2 0 193 1 7 993 360 286 109 31 chr4 53544945 53545134 -102084986 - MIRb SINE MIR -13 249 48 7 993 1020 97 21 0 chr4 53546006 53546151 -102083969 + B1_Mus1 SINE Alu 1 148 0 7 993 489 292 0 42 chr4 53546177 53546295 -102083825 + PB1D7 SINE Alu 1 113 -7 7 993 181 140 23 23 chr4 53546370 53546414 -102083706 + GA-rich Low_complexity Low_complexity 1 44 0 7 993 216 0 0 0 chr4 53547152 53547176 -102082944 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 993 236 254 13 53 chr4 53548357 53548432 -102081688 + ID4 SINE ID 4 75 -8 7 993 31 0 0 0 chr4 53549887 53549918 -102080202 + AT_rich Low_complexity Low_complexity 1 31 0 7 993 198 305 95 44 chr4 53552854 53552991 -102077129 + MIRm SINE MIR 106 249 -27 8 993 232 250 73 0 chr4 53555490 53555558 -102074562 + ID4 SINE ID 1 73 -10 8 993 280 105 35 17 chr4 53556050 53556108 -102074012 + GA-rich Low_complexity Low_complexity 1 59 0 8 993 274 202 25 5 chr4 53556999 53557073 -102073047 - B1_Mur4 SINE Alu 0 120 43 8 993 287 200 212 26 chr4 53557806 53557919 -102072201 - L1MA7 LINE L1 -19 6272 6139 8 993 271 104 82 82 chr4 53558020 53558093 -102072027 + L1M2 LINE L1 5049 5121 -1022 8 993 775 265 83 29 chr4 53559209 53559485 -102070635 - B4A SINE B4 0 292 2 8 993 372 43 0 0 chr4 53559620 53559666 -102070454 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 993 250 87 43 0 chr4 53559721 53559767 -102070353 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 993 453 122 0 0 chr4 53559808 53559882 -102070238 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 993 486 281 180 14 chr4 53560888 53561166 -102068954 - ORR1E LTR MaLR -34 325 2 8 993 576 121 0 0 chr4 53562058 53562149 -102067971 + (TCC)n Simple_repeat Simple_repeat 3 93 0 8 993 243 79 0 0 chr4 53562155 53562193 -102067927 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 993 243 259 17 17 chr4 53562195 53562254 -102067866 - B3A SINE B2 -42 156 98 9 993 231 286 11 77 chr4 53562389 53562480 -102067640 - PB1D10 SINE Alu -7 110 26 9 993 186 43 0 0 chr4 53563036 53563059 -102067061 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 9 993 365 0 22 0 chr4 53563749 53563794 -102066326 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 993 334 226 11 56 chr4 53564057 53564146 -102065974 + ID_B1 SINE B4 85 169 -55 9 993 195 162 0 0 chr4 53564167 53564204 -102065916 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 993 637 135 0 0 chr4 53564205 53564301 -102065819 + B1_Mur4 SINE Alu 46 141 -9 9 993 200 59 29 0 chr4 53564302 53564336 -102065784 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 9 993 533 197 138 44 chr4 53564409 53564568 -102065552 - B3 SINE B2 0 216 43 9 993 567 238 11 28 chr4 53564811 53564962 -102065158 + ID_B1 SINE B4 80 222 -2 1 993 342 0 0 0 chr4 53565724 53565762 -102064358 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1 993 219 273 76 0 chr4 53566760 53566826 -102063294 + ID SINE ID 10 80 -144 1 993 1252 189 98 21 chr4 53566893 53567228 -102062892 + MTD LTR MaLR 18 378 -41 1 993 202 323 50 10 chr4 53567323 53567423 -102062697 + MIR SINE MIR 131 234 -28 1 993 207 0 0 0 chr4 53567426 53567449 -102062671 + (T)n Simple_repeat Simple_repeat 1 23 0 1 993 306 0 0 0 chr4 53568269 53568303 -102061817 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 993 225 0 0 0 chr4 53568332 53568357 -102061763 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 993 315 0 0 0 chr4 53568357 53568391 -102061729 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 993 813 114 36 64 chr4 53568919 53569059 -102061061 - B1_Mm SINE Alu -11 136 1 1 993 787 188 64 73 chr4 53569696 53569914 -102060206 + B3 SINE B2 1 216 0 1 993 275 284 0 26 chr4 53570228 53570304 -102059816 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 993 201 74 0 0 chr4 53570309 53570336 -102059784 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 993 248 283 0 0 chr4 53571027 53571087 -102059033 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 1 993 240 278 0 65 chr4 53571087 53571104 -102059016 - ID4_ SINE ID -10 73 2 1 993 910 158 0 0 chr4 53571825 53571958 -102058162 + B1_Mur4 SINE Alu 3 135 -15 1 993 3547 10 5 0 chr4 53571958 53572349 -102057771 + MTA_Mm LTR MaLR 4 396 0 1 993 189 94 0 0 chr4 53572366 53572398 -102057722 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 993 189 74 0 0 chr4 53572700 53572727 -102057393 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 993 683 208 73 34 chr4 53574608 53574812 -102055308 + B3 SINE B2 1 212 -4 1 993 342 274 0 10 chr4 53575192 53575288 -102054832 - PB1D7 SINE Alu -13 107 13 1 993 346 299 10 0 chr4 53575568 53575665 -102054455 + B1F1 SINE Alu 43 140 -9 1 993 27 0 0 0 chr4 53575665 53575692 -102054428 + AT_rich Low_complexity Low_complexity 1 27 0 1 993 275 235 51 0 chr4 53576747 53576845 -102053275 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 1 993 345 174 0 0 chr4 53578349 53578418 -102051702 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1 993 251 236 0 0 chr4 53579011 53579066 -102051054 + T-rich Low_complexity Low_complexity 1 55 0 1 993 21 0 0 0 chr4 53579687 53579708 -102050412 + AT_rich Low_complexity Low_complexity 1 21 0 1 993 219 36 0 0 chr4 53580047 53580075 -102050045 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 993 183 42 0 0 chr4 53583163 53583187 -102046933 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 1 993 24 32 0 0 chr4 53585873 53585904 -102044216 + AT_rich Low_complexity Low_complexity 1 31 0 1 993 399 221 42 10 chr4 53588080 53588176 -102041944 - PB1D10 SINE Alu -1 116 18 1 993 192 283 0 36 chr4 53589590 53589645 -102040475 + MIRc SINE MIR 82 134 -134 1 993 408 293 81 30 chr4 53589737 53589934 -102040186 + B4 SINE B4 11 217 -75 1 993 250 153 72 0 chr4 53589934 53590045 -102040075 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 993 497 110 12 0 chr4 53590356 53590438 -102039682 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 993 293 328 75 37 chr4 53591116 53591303 -102038817 + MIRb SINE MIR 2 195 -73 1 993 286 233 48 19 chr4 53591434 53591539 -102038581 + L1M4c LINE L1 215 322 -6424 1 993 604 270 73 44 chr4 53592230 53592435 -102037685 + ID_B1 SINE B4 1 211 -13 1 993 609 116 28 23 chr4 53592505 53592682 -102037438 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 993 553 229 137 0 chr4 53592691 53592866 -102037254 + L1M4c LINE L1 1193 1391 -5355 1 993 627 325 53 44 chr4 53592867 53593321 -102036799 + L1M4c LINE L1 1805 2262 -4588 1 993 24 32 0 0 chr4 53594430 53594461 -102035659 + AT_rich Low_complexity Low_complexity 1 31 0 1 993 417 39 0 0 chr4 53594507 53594558 -102035562 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 993 1958 258 80 10 chr4 53594560 53595137 -102034983 - Lx8 LINE L1 -55 7418 6802 1 993 1088 274 99 115 chr4 53595231 53595597 -102034523 + L1M4c LINE L1 2794 3179 -3669 1 993 907 261 95 0 chr4 53595597 53595850 -102034270 + B4 SINE B4 2 278 -14 1 993 1088 273 101 120 chr4 53595850 53595888 -102034232 + L1M4c LINE L1 3180 3186 -3662 1 993 327 104 0 0 chr4 53595888 53595936 -102034184 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 993 1088 273 101 120 chr4 53595936 53596058 -102034062 + L1M4c LINE L1 3187 3254 -3594 1 993 957 135 0 20 chr4 53596058 53596209 -102033911 - B1_Mus1 SINE Alu 0 148 1 1 993 1088 273 101 120 chr4 53596209 53596762 -102033358 + L1M4c LINE L1 3255 3859 -2989 1 993 1106 308 97 44 chr4 53596889 53597876 -102032244 + L1M4c LINE L1 4334 5380 -1462 1 993 364 73 333 18 chr4 53598064 53598175 -102031945 - B2_Mm2 SINE B2 -3 192 47 1 993 1250 92 17 0 chr4 53598207 53598381 -102031739 - B2_Mm1t SINE B2 -14 179 3 1 993 742 277 13 123 chr4 53598499 53598808 -102031312 + B4A SINE B4 14 288 -4 1 993 501 234 214 34 chr4 53598867 53599296 -102030824 + L1M4c LINE L1 5863 6364 -518 1 993 415 289 20 60 chr4 53599415 53599566 -102030554 + RSINE1 SINE B4 2 146 -19 1 993 632 286 82 25 chr4 53599632 53599948 -102030172 + L1MB7 LINE L1 5835 6168 -16 1 993 517 296 108 72 chr4 53600126 53600600 -102029520 - L1MC4 LINE L1 -301 7741 7251 1 993 1389 199 164 6 chr4 53600603 53600957 -102029163 - MTD LTR MaLR 0 419 10 1 993 468 300 61 14 chr4 53601234 53601447 -102028673 - L1MC4 LINE L1 -1020 7022 6800 1 993 221 327 67 0 chr4 53601550 53601654 -102028466 - BC1_Mm scRNA scRNA -41 111 1 1 993 282 255 111 10 chr4 53601762 53601861 -102028259 - MLT1A1 LTR MaLR 0 408 300 1 993 720 194 35 7 chr4 53601957 53602102 -102028018 - B1_Mur4 SINE Alu 0 150 2 1 993 372 291 112 59 chr4 53602554 53602821 -102027299 - MTC LTR MaLR -136 243 3 1 993 201 39 0 0 chr4 53602857 53602883 -102027237 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 993 198 0 0 0 chr4 53603525 53603547 -102026573 + (CCA)n Simple_repeat Simple_repeat 3 24 0 1 993 222 105 51 34 chr4 53605140 53605199 -102024921 + T-rich Low_complexity Low_complexity 1 60 0 1 993 484 176 10 10 chr4 53605688 53605791 -102024329 + Lx3C LINE L1 6872 6974 -2 1 993 365 58 19 0 chr4 53606008 53606060 -102024060 + (TCTCCC)n Simple_repeat Simple_repeat 1 53 0 1 993 482 231 30 48 chr4 53606064 53606232 -102023888 - B4 SINE B4 -9 283 119 1 993 433 187 11 11 chr4 53606282 53606374 -102023746 - MTC LTR MaLR 0 421 330 1 993 209 194 0 118 chr4 53606823 53606899 -102023221 + L2b LINE L2 3313 3386 -1 1 993 290 244 15 105 chr4 53607043 53607176 -102022944 + MER5A DNA MER1_type 64 184 -5 1 994 487 287 8 0 chr4 53610229 53610351 -102019769 - B3A SINE B2 -75 123 1 1 994 805 219 20 41 chr4 53611340 53611363 -102018757 - B3A SINE B2 -5 193 173 1 994 351 0 0 0 chr4 53611363 53611402 -102018718 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 994 805 219 20 41 chr4 53611402 53611573 -102018547 - B3A SINE B2 -26 172 3 1 994 694 231 84 35 chr4 53612104 53612306 -102017814 + B3 SINE B2 4 215 -1 1 994 4273 112 45 17 chr4 53612338 53613026 -102017094 + Lx LINE L1 5946 6652 -2 1 994 1192 61 0 0 chr4 53613029 53613176 -102016944 + B1_Mm SINE Alu 1 147 0 1 994 216 0 0 0 chr4 53613176 53613200 -102016920 + (A)n Simple_repeat Simple_repeat 1 24 0 1 994 417 20 0 0 chr4 53613265 53613315 -102016805 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 994 394 247 0 11 chr4 53613323 53613417 -102016703 - RSINE1 SINE B4 -32 133 41 1 994 249 159 0 0 chr4 53614227 53614271 -102015849 + CT-rich Low_complexity Low_complexity 1 44 0 1 994 1228 255 81 21 chr4 53614281 53614708 -102015412 - Lx7 LINE L1 -1877 5819 5323 1 994 2737 51 0 0 chr4 53614691 53615025 -102015095 + L1Md_T LINE L1 5253 5586 -297 1 994 9130 5 0 4 chr4 53615025 53616025 -102014095 + L1Md_T LINE L1 5587 6582 0 1 994 492 175 0 0 chr4 53616029 53616126 -102013994 + GA-rich Low_complexity Low_complexity 2 98 0 1 994 409 191 43 17 chr4 53616202 53616319 -102013801 - MTD LTR MaLR -272 147 28 1 994 1038 273 92 34 chr4 53616337 53616807 -102013313 - L1M4 LINE L1 -835 5311 4815 1 994 243 340 10 10 chr4 53617295 53617399 -102012721 - L4 LINE RTE -1235 794 691 1 994 1167 62 0 14 chr4 53617782 53617930 -102012190 - B1_Mm SINE Alu 0 147 2 1 994 10618 53 5 2 chr4 53618064 53619531 -102010589 - L1Md_F2 LINE L1 -574 6008 4536 1 994 4110 61 38 8 chr4 53619531 53620062 -102010058 + L1Md_F2 LINE L1 6031 6577 -5 1 994 330 317 10 10 chr4 53620365 53620467 -102009653 + ID_B1 SINE B4 1 102 -122 1 994 4473 16 2 0 chr4 53620935 53621427 -102008693 - MT2_Mm LTR ERVL 0 493 1 1 994 321 0 0 0 chr4 53621427 53621465 -102008655 - MERVL-int LTR ERVL 0 5485 5448 1 994 362 167 46 35 chr4 53621465 53621552 -102008568 - ORR1A3-int LTR MaLR -1323 640 553 1 994 48526 14 6 0 chr4 53621552 53626878 -102003242 - MERVL-int LTR ERVL -125 5360 1 1 994 4473 16 2 0 chr4 53626878 53627370 -102002750 - MT2_Mm LTR ERVL 0 493 1 1 994 310 295 119 40 chr4 53628370 53628571 -102001549 + L1M5 LINE L1 5488 5704 -469 1 994 227 331 102 8 chr4 53628692 53628820 -102001300 + L1M5 LINE L1 5695 5834 -406 1 994 251 213 13 0 chr4 53629099 53629174 -102000946 + GA-rich Low_complexity Low_complexity 1 76 0 1 994 299 295 113 9 chr4 53629422 53629528 -102000592 + PB1D10 SINE Alu 1 117 0 1 994 281 254 30 0 chr4 53629638 53629705 -102000415 - L2a LINE L2 -40 3386 3318 1 994 470 304 115 45 chr4 53629883 53630152 -101999968 + B4A SINE B4 1 288 -4 1 994 235 318 93 9 chr4 53630412 53630520 -101999600 - PB1D7 SINE Alu 0 120 4 1 994 510 237 42 171 chr4 53630587 53630654 -101999466 - ID_B1 SINE B4 -13 211 145 1 994 612 0 0 0 chr4 53630654 53630722 -101999398 + (CTG)n Simple_repeat Simple_repeat 2 69 0 1 994 510 237 42 171 chr4 53630722 53630893 -101999227 - ID_B1 SINE B4 -80 144 4 1 994 780 169 120 46 chr4 53630967 53631184 -101998936 + Lx3C LINE L1 6744 6976 0 1 994 613 168 70 31 chr4 53631686 53631815 -101998305 - B1_Mur1 SINE Alu 0 149 16 1 994 316 277 48 55 chr4 53631815 53631830 -101998290 - ID_B1 SINE B4 0 223 81 1 994 337 254 48 32 chr4 53631888 53632014 -101998106 - Lx7 LINE L1 0 7696 7569 1 994 566 278 29 61 chr4 53632041 53632286 -101997834 - Lx7 LINE L1 -333 7363 7127 1 994 495 272 57 36 chr4 53632434 53632682 -101997438 + L1MC3 LINE L1 7523 7775 -10 1 994 229 338 25 0 chr4 53633420 53633500 -101996620 - ID4 SINE ID 0 83 2 1 994 456 19 0 0 chr4 53633640 53633693 -101996427 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 994 248 184 33 33 chr4 53633693 53633783 -101996337 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 994 243 0 0 0 chr4 53633827 53633854 -101996266 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 994 226 266 49 25 chr4 53634201 53634282 -101995838 - MIR SINE MIR -134 128 46 2 994 211 332 96 62 chr4 53634891 53635100 -101995020 - MIRb SINE MIR -26 242 27 2 994 610 286 50 15 chr4 53635273 53635475 -101994645 + MER58A DNA MER1_type 16 224 0 2 994 500 105 9 62 chr4 53635975 53636107 -101994013 + L1_Mus3 LINE L1 6532 6638 0 2 994 1199 112 11 21 chr4 53636107 53636298 -101993822 + B2_Mm1t SINE B2 3 191 -2 2 994 500 105 9 62 chr4 53636298 53636313 -101993807 + L1_Mus3 LINE L1 6624 6636 -2 2 994 779 246 94 116 chr4 53636335 53636556 -101993564 - MLT1A0 LTR MaLR -1 364 149 2 994 636 14 0 0 chr4 53636556 53636629 -101993491 + (TCTCC)n Simple_repeat Simple_repeat 2 74 0 2 994 779 246 94 116 chr4 53636629 53636779 -101993341 - MLT1A0 LTR MaLR -217 148 1 2 994 246 277 0 24 chr4 53636902 53636987 -101993133 - L1M5 LINE L1 -244 5880 5798 2 994 967 47 0 0 chr4 53637263 53637391 -101992729 - B2_Mm2 SINE B2 -66 129 2 2 994 2350 244 136 23 chr4 53638467 53638570 -101991550 - Lx8 LINE L1 -6 7467 7363 2 994 324 64 0 0 chr4 53638570 53638617 -101991503 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 994 2350 244 136 23 chr4 53638617 53638941 -101991179 - Lx8 LINE L1 -111 7362 6954 2 994 351 0 0 0 chr4 53638941 53638980 -101991140 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 994 2350 244 136 23 chr4 53638980 53639200 -101990920 - Lx8 LINE L1 -520 6953 6733 2 994 1377 142 0 114 chr4 53639200 53639454 -101990666 + URR1B DNA MER1_type 1 225 0 2 994 2350 244 136 23 chr4 53639454 53639546 -101990574 - Lx8 LINE L1 -741 6732 6643 2 994 245 315 63 0 chr4 53640010 53640137 -101989983 - MIRb SINE MIR -21 247 113 2 994 194 338 54 42 chr4 53640401 53640568 -101989552 - MIRb SINE MIR -39 229 61 2 994 676 300 69 11 chr4 53641001 53641261 -101988859 - B4A SINE B4 -17 275 1 2 994 987 213 35 5 chr4 53641288 53641491 -101988629 - B3 SINE B2 -3 213 5 2 994 452 294 111 6 chr4 53641540 53641711 -101988409 - MER5A DNA MER1_type 0 189 1 2 994 841 148 42 14 chr4 53642678 53642822 -101987298 + B1_Mur4 SINE Alu 2 149 -1 2 994 201 200 0 71 chr4 53644488 53644558 -101985562 + G-rich Low_complexity Low_complexity 6 70 0 2 994 248 0 31 0 chr4 53644563 53644595 -101985525 + (CCCGA)n Simple_repeat Simple_repeat 4 36 0 2 994 182 329 27 54 chr4 53646485 53646559 -101983561 + MIRm SINE MIR 121 192 -84 2 994 188 178 67 0 chr4 53647706 53647751 -101982369 - MIRb SINE MIR -168 100 53 2 994 21 0 0 0 chr4 53647847 53647868 -101982252 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 480 206 10 10 chr4 53647882 53647985 -101982135 + B3A SINE B2 1 103 -95 2 994 34 0 0 0 chr4 53648646 53648680 -101981440 + AT_rich Low_complexity Low_complexity 1 34 0 2 994 337 354 88 23 chr4 53648831 53649216 -101980904 - L1ME4a LINE L1 -188 5936 5527 2 994 216 0 0 0 chr4 53649297 53649321 -101980799 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 994 201 74 0 0 chr4 53651662 53651689 -101978431 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 994 843 226 11 5 chr4 53652334 53652521 -101977599 - B3 SINE B2 -14 202 15 2 994 1839 233 41 82 chr4 53654016 53654651 -101975469 - RMER19C LTR ERVK 0 611 3 2 994 201 74 0 0 chr4 53654760 53654787 -101975333 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 994 1143 232 55 112 chr4 53655407 53655809 -101974311 - MTE2a LTR MaLR 0 379 1 2 994 665 235 34 139 chr4 53655809 53656017 -101974103 + B3A SINE B2 2 187 -8 2 994 541 228 154 0 chr4 53656652 53656801 -101973319 - B3 SINE B2 -44 172 1 2 994 520 234 0 61 chr4 53656854 53656986 -101973134 - PB1 SINE Alu -3 124 1 2 994 668 174 0 0 chr4 53659493 53659614 -101970506 + B1_Mur1 SINE Alu 1 121 -28 2 994 733 138 49 1 chr4 53660263 53660427 -101969693 + URR1B DNA MER1_type 55 224 -1 2 994 712 309 104 47 chr4 53660849 53661471 -101968649 - L1MB2 LINE L1 -92 6079 5422 2 994 771 212 7 0 chr4 53661481 53661627 -101968493 - B1_Mur2 SINE Alu 0 149 3 2 994 318 279 92 18 chr4 53661647 53661811 -101968309 - L1MB2 LINE L1 -744 5436 5261 2 994 347 191 56 0 chr4 53661921 53662010 -101968110 - L1MB2 LINE L1 -881 5259 5166 2 994 306 0 0 0 chr4 53662324 53662358 -101967762 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 994 964 177 54 25 chr4 53664285 53664488 -101965632 - B3 SINE B2 -6 210 2 2 994 417 153 0 0 chr4 53664542 53664614 -101965506 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 994 459 218 0 23 chr4 53664679 53664792 -101965328 - B1_Mur3 SINE Alu -13 136 27 2 994 710 289 24 9 chr4 53665737 53665950 -101964170 - ID_B1 SINE B4 -8 216 1 2 994 455 291 17 0 chr4 53666212 53666329 -101963791 + PB1D7 SINE Alu 2 120 0 2 994 380 20 20 0 chr4 53668731 53668780 -101961340 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 994 192 77 0 0 chr4 53670582 53670608 -101959512 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 994 781 147 20 27 chr4 53670631 53670778 -101959342 - B1_Mus1 SINE Alu 0 148 3 2 994 275 340 153 10 chr4 53672700 53672896 -101957224 + MIR SINE MIR 3 226 -36 2 994 213 150 0 24 chr4 53673241 53673282 -101956838 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 994 561 307 93 44 chr4 53673518 53673743 -101956377 + MER47B DNA MER2_type 9 244 -174 2 994 292 28 0 0 chr4 53674448 53674484 -101955636 - U2 snRNA snRNA -152 36 1 2 994 576 274 234 10 chr4 53674599 53675115 -101955005 - L1MC3 LINE L1 -1839 5946 5315 2 994 248 245 105 70 chr4 53676791 53676905 -101953215 - B1F SINE Alu -2 118 1 2 994 3095 252 126 28 chr4 53676909 53677112 -101953008 - L1MC3 LINE L1 -982 5164 4947 2 994 180 0 0 0 chr4 53677112 53677132 -101952988 + (TCC)n Simple_repeat Simple_repeat 3 22 0 2 994 3095 252 126 28 chr4 53677132 53678039 -101952081 - L1MC3 LINE L1 -1200 4946 3939 2 994 1121 65 0 0 chr4 53678039 53678177 -101951943 + B1_Mus1 SINE Alu 1 138 -10 2 994 3095 252 126 28 chr4 53678177 53678728 -101951392 - L1MC3 LINE L1 -2208 3938 3340 2 994 860 179 7 7 chr4 53678747 53678893 -101951227 - B1_Mus1 SINE Alu -1 147 2 2 994 401 221 8 103 chr4 53678781 53678907 -101951213 - MT2B LTR ERVL -337 264 151 2 994 229 204 0 20 chr4 53678922 53678972 -101951148 + CT-rich Low_complexity Low_complexity 1 49 0 2 994 306 0 0 0 chr4 53678979 53679013 -101951107 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 994 292 324 63 88 chr4 53679040 53679058 -101951062 - B4 SINE B4 -61 231 170 2 994 415 293 94 8 chr4 53679058 53679175 -101950945 - B1F2 SINE Alu -9 140 14 2 994 292 324 63 88 chr4 53679175 53679199 -101950921 - B4 SINE B4 -61 169 77 2 994 1504 263 76 40 chr4 53679199 53680010 -101950110 - L1MC3 LINE L1 -2821 3325 2485 2 994 433 292 104 0 chr4 53680050 53680262 -101949858 - L1MC3 LINE L1 -3752 2394 2161 2 994 319 346 105 0 chr4 53680285 53680418 -101949702 - MER21B LTR ERV1 -103 760 614 2 994 517 243 87 24 chr4 53680468 53680675 -101949445 + Lx9 LINE L1 7425 7644 0 2 994 734 278 34 51 chr4 53680694 53680929 -101949191 - MER21B LTR ERV1 -288 575 345 2 994 33839 36 1 0 chr4 53681275 53687775 -101942345 + L1Md_T LINE L1 1 5589 -297 2 994 8982 7 0 0 chr4 53687775 53688771 -101941349 + L1Md_T LINE L1 5590 6585 0 2 994 253 286 0 0 chr4 53688849 53688926 -101941194 + L1M4c LINE L1 2303 2379 -4005 2 994 362 284 51 23 chr4 53689277 53689493 -101940627 - L1MC LINE L1 -1929 4217 3996 2 994 250 255 0 0 chr4 53689535 53689586 -101940534 - PB1D10 SINE Alu -57 60 10 2 994 1039 207 9 18 chr4 53689628 53689845 -101940275 - B3 SINE B2 0 216 2 2 994 1119 101 0 0 chr4 53689896 53690044 -101940076 + B1_Mus1 SINE Alu 1 148 0 2 994 4875 85 16 17 chr4 53690063 53690759 -101939361 - Lx3_Mus LINE L1 -10 6999 6305 2 994 2265 91 8 14 chr4 53690788 53691157 -101938963 + Lx3_Mus LINE L1 5904 6270 -739 2 994 351 267 226 0 chr4 53691160 53691306 -101938814 - L1MC LINE L1 -2160 3986 3808 2 994 747 0 0 0 chr4 53691308 53691391 -101938729 + (TTTTC)n Simple_repeat Simple_repeat 2 84 0 2 994 482 276 24 31 chr4 53691391 53691518 -101938602 - B1_Mur2 SINE Alu -11 138 13 2 994 422 196 110 20 chr4 53691828 53692002 -101938118 - L1MA5 LINE L1 -57 6243 6066 2 994 236 67 67 0 chr4 53692064 53692109 -101938011 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 2 994 1141 82 7 0 chr4 53692109 53692255 -101937865 - B1_Mus1 SINE Alu -1 147 1 2 994 26 30 0 0 chr4 53692284 53692317 -101937803 + AT_rich Low_complexity Low_complexity 1 33 0 2 994 397 179 16 86 chr4 53693137 53693150 -101936970 - PB1D9 SINE Alu -1 119 108 2 994 201 39 0 0 chr4 53693150 53693176 -101936944 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 994 397 179 16 86 chr4 53693176 53693290 -101936830 - PB1D9 SINE Alu -13 107 1 2 994 2105 174 38 15 chr4 53693990 53694388 -101935732 + MTB_Mm LTR MaLR 1 407 0 2 994 369 0 0 0 chr4 53694555 53694596 -101935524 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 2 994 317 304 18 0 chr4 53694596 53694708 -101935412 - PB1D10 SINE Alu -1 116 3 2 994 501 221 62 0 chr4 53695270 53695383 -101934737 - RSINE1 SINE B4 -39 126 7 2 994 2078 155 14 25 chr4 53698217 53698574 -101931546 - ORR1B1 LTR MaLR -1 393 41 2 994 612 352 49 35 chr4 53701262 53701609 -101928511 - MER76 LTR ERVL -15 676 325 2 994 1462 130 5 0 chr4 53701675 53701890 -101928230 - URR1B DNA MER1_type 0 225 10 2 994 567 266 44 64 chr4 53701676 53701925 -101928195 + CYRA11_Mm Unknown Y-chromosome 172 415 -202 2 994 2941 53 11 0 chr4 53703174 53703552 -101926568 - L1_Mus3 LINE L1 -1 6637 6256 2 994 253 349 159 6 chr4 53704386 53704562 -101925558 - Charlie15a DNA MER1_type -19 205 3 2 994 306 106 0 0 chr4 53704635 53704682 -101925438 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 2 994 315 322 78 0 chr4 53705069 53705184 -101924936 - B1F SINE Alu -8 141 18 2 994 448 120 0 62 chr4 53705403 53705483 -101924637 - B1_Mur4 SINE Alu -1 149 75 2 994 414 264 49 41 chr4 53705981 53706140 -101923980 - B4 SINE B4 -69 155 2 2 994 23 54 0 0 chr4 53706817 53706854 -101923266 + AT_rich Low_complexity Low_complexity 1 37 0 2 994 282 302 12 0 chr4 53707303 53707389 -101922731 + PB1D10 SINE Alu 5 91 -26 2 994 25 51 0 0 chr4 53707779 53707818 -101922302 + AT_rich Low_complexity Low_complexity 1 39 0 2 994 2607 248 155 12 chr4 53708299 53709364 -101920756 - MMAR1 DNA Mariner -1 1285 1 3 994 1170 55 7 0 chr4 53709431 53709576 -101920544 + B1_Mus2 SINE Alu 2 147 0 3 994 369 357 105 4 chr4 53711219 53711458 -101918662 - L1ME1 LINE L1 -1 6178 5916 3 994 2309 159 141 12 chr4 53711462 53711959 -101918161 + RLTR31_Mm LTR ERVK 1 561 0 3 994 4193 162 55 51 chr4 53712169 53712634 -101917486 - Lx5 LINE L1 -773 6277 5782 3 994 1054 102 0 0 chr4 53712634 53712781 -101917339 - B1_Mus1 SINE Alu 0 148 2 3 994 4193 154 18 42 chr4 53712781 53713518 -101916602 - Lx5 LINE L1 -96 5781 5046 3 994 209 57 0 28 chr4 53714921 53714957 -101915163 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 994 1126 105 0 0 chr4 53715078 53715221 -101914899 + B1_Mus2 SINE Alu 1 143 -4 3 994 180 0 0 0 chr4 53715226 53715246 -101914874 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 3 994 315 0 0 0 chr4 53717018 53717053 -101913067 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 994 24 67 0 0 chr4 53717197 53717242 -101912878 + AT_rich Low_complexity Low_complexity 1 45 0 3 994 554 252 72 0 chr4 53717685 53717824 -101912296 + RSINE1 SINE B4 3 151 -14 3 994 255 61 0 0 chr4 53717828 53717861 -101912259 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 994 227 239 122 52 chr4 53718865 53718980 -101911140 + MIRc SINE MIR 71 193 -75 3 994 30 59 0 0 chr4 53719891 53719942 -101910178 + AT_rich Low_complexity Low_complexity 1 51 0 3 994 1215 27 0 14 chr4 53719972 53720120 -101910000 + B1_Mus2 SINE Alu 2 147 0 3 994 23 0 0 0 chr4 53720264 53720287 -101909833 + AT_rich Low_complexity Low_complexity 1 23 0 3 994 2322 131 57 10 chr4 53721936 53722338 -101907782 + MTC LTR MaLR 1 421 0 3 994 1245 259 56 67 chr4 53723643 53724019 -101906101 + MTE2a LTR MaLR 3 374 -5 3 994 888 188 189 33 chr4 53724173 53724453 -101905667 + RMER21B LTR ERV1 317 684 -263 3 994 230 242 0 162 chr4 53724544 53724618 -101905502 + RMER21B LTR ERV1 774 835 -112 3 994 461 287 219 19 chr4 53724795 53724955 -101905165 - B3A SINE B2 -6 192 1 3 994 782 269 108 51 chr4 53725236 53725569 -101904551 - ORR1E LTR MaLR -7 352 1 3 994 323 290 276 0 chr4 53725687 53725904 -101904216 + Tigger13a DNA MER2_type 347 623 -148 3 994 213 226 0 0 chr4 53726105 53726158 -101903962 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 994 248 250 0 71 chr4 53726168 53726224 -101903896 - PB1D10 SINE Alu -48 69 18 3 994 386 273 62 26 chr4 53726291 53726404 -101903716 + ID_B1 SINE B4 85 201 -23 3 994 255 61 0 0 chr4 53726758 53726791 -101903329 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 3 994 188 67 0 32 chr4 53727750 53727781 -101902339 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 994 263 314 17 0 chr4 53728074 53728181 -101901939 + B1F2 SINE Alu 1 111 -38 3 994 2253 170 65 12 chr4 53728244 53728644 -101901476 - MTC LTR MaLR 0 421 1 3 994 788 242 29 57 chr4 53728688 53728898 -101901222 + B4 SINE B4 10 213 -79 3 994 803 218 139 48 chr4 53728923 53729174 -101900946 + B4A SINE B4 1 274 -18 3 994 670 196 96 15 chr4 53729368 53729503 -101900617 - B1_Mur1 SINE Alu 0 149 4 3 994 351 217 87 0 chr4 53729856 53729925 -101900195 - ID4_ SINE ID -8 75 1 3 994 300 260 76 38 chr4 53729939 53730071 -101900049 - B1F1 SINE Alu -8 141 5 3 994 1504 249 75 25 chr4 53730180 53730620 -101899500 - Lx7 LINE L1 -375 7321 6860 3 994 654 262 28 34 chr4 53731069 53731247 -101898873 + B3A SINE B2 18 194 -4 3 994 234 231 14 84 chr4 53731279 53731350 -101898770 + ID4_ SINE ID 18 83 0 3 994 573 271 43 7 chr4 53732653 53732794 -101897326 - B1F1 SINE Alu -1 148 3 3 994 23 78 0 0 chr4 53733126 53733177 -101896943 + AT_rich Low_complexity Low_complexity 1 51 0 3 994 987 258 4 34 chr4 53733835 53734072 -101896048 - 7SK RNA RNA -101 230 1 3 994 317 357 82 20 chr4 53734095 53734241 -101895879 - Tigger5 DNA MER2_type -2249 157 3 3 994 2517 53 94 0 chr4 53734771 53735089 -101895031 - L1_Mus2 LINE L1 0 6566 6219 3 994 488 247 0 11 chr4 53735089 53735183 -101894937 + RSINE1 SINE B4 50 142 -23 3 994 183 42 0 0 chr4 53735196 53735220 -101894900 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 3 994 2709 158 32 16 chr4 53736770 53737272 -101892848 + RLTR11A LTR ERVK 17 526 -2 3 994 1080 245 61 4 chr4 53737451 53737681 -101892439 + LTR33 LTR ERVL 7 249 -266 3 994 719 316 212 27 chr4 53738057 53738763 -101891357 - L2a LINE L2 -284 3142 2315 3 994 301 278 65 32 chr4 53738810 53738903 -101891217 + RSINE1 SINE B4 55 150 -15 3 994 1198 68 0 0 chr4 53738940 53739086 -101891034 + B1_Mm SINE Alu 2 147 0 3 994 396 59 0 0 chr4 53739086 53739137 -101890983 + (A)n Simple_repeat Simple_repeat 1 51 0 3 994 195 42 0 0 chr4 53739147 53739171 -101890949 + (CAG)n Simple_repeat Simple_repeat 2 25 0 3 994 951 261 45 0 chr4 53739174 53739373 -101890747 + B3 SINE B2 2 209 -7 3 124 220 316 168 61 chr4 53739394 53739704 -101890416 - L2a LINE L2 -1107 2312 1970 3 995 773 181 8 8 chr4 53739784 53739918 -101890202 - B1_Mur3 SINE Alu -7 142 9 3 995 434 351 189 0 chr4 53740007 53740235 -101889885 - L2a LINE L2 -1622 1797 1527 3 995 195 42 0 0 chr4 53740248 53740272 -101889848 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 995 1165 72 0 13 chr4 53740272 53740427 -101889693 - B2_Mm2 SINE B2 -41 154 2 3 995 232 280 80 70 chr4 53740693 53740793 -101889327 - PB1D7 SINE Alu -1 119 19 3 995 1087 70 0 0 chr4 53741304 53741432 -101888688 + B1_Mus1 SINE Alu 2 129 -19 3 995 514 122 17 9 chr4 53741440 53741556 -101888564 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 3 995 222 37 0 0 chr4 53742603 53742630 -101887490 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 3 995 238 344 191 0 chr4 53743042 53743225 -101886895 - MIRb SINE MIR -48 220 3 3 995 547 206 10 50 chr4 53743461 53743630 -101886490 + ID_B1 SINE B4 12 214 -10 3 995 588 213 72 22 chr4 53743746 53743885 -101886235 - B1F2 SINE Alu -3 146 1 3 995 347 254 0 0 chr4 53743890 53743957 -101886163 + BC1_Mm scRNA scRNA 20 86 -66 3 995 3616 132 52 13 chr4 53744258 53744872 -101885248 - RMER12 LTR ERVK -681 641 4 3 995 320 326 8 15 chr4 53746660 53746791 -101883329 + MIRc SINE MIR 111 240 -28 3 995 204 67 0 0 chr4 53747030 53747060 -101883060 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 995 532 244 16 0 chr4 53747085 53747212 -101882908 - Lx9 LINE L1 -451 7193 7065 3 995 210 208 0 20 chr4 53748034 53748083 -101882037 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 995 3654 30 2 0 chr4 53748203 53748598 -101881522 - MTA_Mm LTR MaLR 0 396 1 3 995 305 267 75 9 chr4 53748635 53748741 -101881379 + L1ME3B LINE L1 6000 6112 -128 3 995 320 295 75 8 chr4 53748863 53748996 -101881124 + B1F SINE Alu 2 143 -6 3 995 361 250 0 119 chr4 53749962 53750080 -101880040 + PB1D10 SINE Alu 14 117 0 3 995 256 87 283 0 chr4 53750101 53750147 -101879973 + tRNA-Ala-GCY_ tRNA tRNA 3 61 -14 3 995 800 259 63 5 chr4 53750706 53750912 -101879208 + ID_B1 SINE B4 4 221 -3 3 995 333 0 0 0 chr4 53751015 53751052 -101879068 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 995 366 80 0 0 chr4 53751298 53751348 -101878772 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 995 406 235 88 38 chr4 53751593 53751752 -101878368 + MTD LTR MaLR 253 419 0 3 995 391 319 17 26 chr4 53752640 53752756 -101877364 + PB1D10 SINE Alu 1 115 -2 3 995 320 353 123 26 chr4 53752760 53752955 -101877165 - L1MC4 LINE L1 -306 7736 7523 3 995 713 241 58 33 chr4 53753055 53753295 -101876825 - RMER15 LTR ERVL -15 560 315 3 995 241 266 13 0 chr4 53753499 53753578 -101876542 - L1MC4 LINE L1 -722 7320 7241 3 995 640 256 174 21 chr4 53753618 53753917 -101876203 - L1MC4 LINE L1 -1037 7005 6617 3 995 2641 286 73 22 chr4 53753985 53754912 -101875208 - Lx9 LINE L1 -247 7397 6423 3 995 926 227 47 8 chr4 53755494 53755685 -101874435 + B3 SINE B2 1 187 -8 3 995 767 103 185 31 chr4 53755970 53756100 -101874020 - B1_Mur4 SINE Alu 0 150 1 3 995 191 296 23 0 chr4 53756504 53756548 -101873572 - L2a LINE L2 -94 3332 3288 3 995 338 268 43 26 chr4 53757023 53757138 -101872982 - Lx8 LINE L1 -116 7357 7241 3 995 755 252 77 36 chr4 53757138 53757360 -101872760 - B4A SINE B4 -61 231 1 3 995 216 0 0 0 chr4 53757809 53757833 -101872287 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 995 808 164 0 0 chr4 53757868 53757996 -101872124 - B2_Mm2 SINE B2 -66 129 2 3 995 266 239 14 27 chr4 53758512 53758585 -101871535 - MER94 DNA AcHobo -7 127 56 3 995 236 222 65 93 chr4 53758613 53758752 -101871368 + MT2B LTR ERVL 142 276 -325 3 995 690 167 76 0 chr4 53758644 53758776 -101871344 + ID_B1 SINE B4 81 222 -2 3 995 301 178 39 64 chr4 53759523 53759601 -101870519 - B1_Mur2 SINE Alu 0 147 72 3 995 297 0 0 0 chr4 53760682 53760715 -101869405 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 995 652 252 12 59 chr4 53762211 53762380 -101867740 + RSINE1 SINE B4 3 163 -2 3 995 1510 171 207 6 chr4 53762438 53762786 -101867334 - MTC LTR MaLR 0 421 4 3 995 242 314 167 29 chr4 53762909 53763083 -101867037 + MIR SINE MIR 1 198 -64 3 995 183 256 152 65 chr4 53763466 53763558 -101866562 + L3 LINE CR1 946 1045 -3444 3 995 260 238 32 0 chr4 53764000 53764063 -101866057 - RLTR19C LTR ERVK -409 97 33 3 995 199 211 0 0 chr4 53764538 53764576 -101865544 + MIR SINE MIR 185 222 -40 3 995 1305 48 0 0 chr4 53765119 53765265 -101864855 + B1_Mus2 SINE Alu 1 146 -1 4 995 364 55 0 18 chr4 53765391 53765446 -101864674 - B1_Mur4 SINE Alu 0 150 97 4 995 1233 62 17 0 chr4 53765575 53765751 -101864369 + (TTC)n Simple_repeat Simple_repeat 2 180 0 4 995 774 150 52 8 chr4 53765788 53765922 -101864198 + B1_Mus1 SINE Alu 2 141 -7 4 995 271 301 113 39 chr4 53767316 53767520 -101862600 - L1M5 LINE L1 -544 5635 5417 4 995 283 314 88 16 chr4 53767614 53767808 -101862312 - L1M5 LINE L1 -902 5244 5037 4 995 290 244 81 0 chr4 53767843 53767929 -101862191 - L1MD3 LINE L1 -173 7822 7730 4 995 326 287 64 9 chr4 53768870 53768979 -101861141 + L1ME1 LINE L1 5741 5855 -324 4 995 235 418 0 0 chr4 53769035 53769126 -101860994 + B1F1 SINE Alu 2 92 -57 4 995 322 208 11 115 chr4 53769144 53769231 -101860889 - RSINE1 SINE B4 -82 83 6 4 995 1266 48 0 7 chr4 53769253 53769401 -101860719 - B1_Mus2 SINE Alu 0 147 1 4 995 357 24 0 0 chr4 53769840 53769882 -101860238 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 995 741 191 28 0 chr4 53770037 53770178 -101859942 - B1_Mur4 SINE Alu -5 145 1 4 995 24 0 0 0 chr4 53770815 53770839 -101859281 + AT_rich Low_complexity Low_complexity 1 24 0 4 995 247 307 22 22 chr4 53771261 53771351 -101858769 + L1MC LINE L1 3986 4075 -2071 4 995 650 275 0 0 chr4 53773297 53773435 -101856685 - ID_B1 SINE B4 -1 223 86 4 995 340 357 121 70 chr4 53773723 53773979 -101856141 - MLT1K LTR MaLR -302 293 25 4 995 258 222 244 44 chr4 53775615 53775775 -101854345 + RLTR25A LTR ERVK 391 582 -521 4 995 961 67 7 7 chr4 53775685 53775812 -101854308 + B1_Mm SINE Alu 13 140 -7 4 995 180 0 0 0 chr4 53775812 53775832 -101854288 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 995 238 0 0 75 chr4 53776143 53776183 -101853937 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 995 531 254 107 8 chr4 53777310 53777441 -101852679 + RSINE1 SINE B4 6 149 -16 4 995 189 0 0 0 chr4 53777471 53777492 -101852628 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 995 219 263 31 154 chr4 53777814 53777886 -101852234 + ID_B1 SINE B4 68 209 -15 4 995 244 247 144 11 chr4 53777886 53777976 -101852144 + B1F SINE Alu 33 134 -15 4 995 276 258 210 30 chr4 53779059 53779077 -101851043 + L1MD LINE L1 4454 4470 -1676 4 995 656 229 22 27 chr4 53779077 53779261 -101850859 + B2_Mm2 SINE B2 2 184 -11 4 995 406 228 134 25 chr4 53779261 53779442 -101850678 + L1MD LINE L1 4471 4688 -1458 4 995 716 223 20 0 chr4 53779442 53779590 -101850530 + B3 SINE B2 60 210 -6 4 995 22 0 0 0 chr4 53779834 53779856 -101850264 + AT_rich Low_complexity Low_complexity 1 22 0 4 995 1005 159 5 36 chr4 53780863 53781058 -101849062 + RLTR14 LTR ERV1 194 382 0 4 995 21 0 0 0 chr4 53781752 53781773 -101848347 + AT_rich Low_complexity Low_complexity 1 21 0 4 995 267 349 45 40 chr4 53781783 53782007 -101848113 + MLT1B LTR MaLR 22 246 -144 4 995 207 0 0 0 chr4 53782294 53782317 -101847803 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 995 1379 87 38 0 chr4 53782451 53782635 -101847485 + B2_Mm2 SINE B2 3 193 -2 4 995 508 283 136 24 chr4 53782683 53782933 -101847187 + B4A SINE B4 2 279 -13 4 995 438 20 0 0 chr4 53782961 53783012 -101847108 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 995 448 164 14 0 chr4 53783144 53783217 -101846903 + B3A SINE B2 6 79 -119 4 995 433 262 99 13 chr4 53785336 53785487 -101844633 - ID_B1 SINE B4 -59 165 2 4 995 1188 55 7 0 chr4 53785525 53785671 -101844449 + B1_Mm SINE Alu 1 147 0 4 995 180 0 0 0 chr4 53785686 53785706 -101844414 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4 995 197 326 101 0 chr4 53785716 53785805 -101844315 - MIRb SINE MIR -79 189 92 4 995 420 300 0 0 chr4 53786081 53786181 -101843939 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 4 995 524 183 21 7 chr4 53786549 53786692 -101843428 + (TA)n Simple_repeat Simple_repeat 2 146 0 4 995 270 0 0 0 chr4 53786726 53786756 -101843364 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 995 311 185 11 0 chr4 53787581 53787673 -101842447 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 995 568 202 147 0 chr4 53787889 53788018 -101842102 + B1_Mur2 SINE Alu 1 148 -1 4 995 234 159 0 0 chr4 53788446 53788490 -101841630 + PB1D10 SINE Alu 74 117 0 4 995 195 340 59 20 chr4 53790846 53790948 -101839172 - MIR SINE MIR -145 117 12 4 995 1080 81 0 0 chr4 53791219 53791367 -101838753 + (TG)n Simple_repeat Simple_repeat 2 149 0 4 995 575 245 21 14 chr4 53791425 53791566 -101838554 + RSINE1 SINE B4 3 144 -21 4 995 232 196 0 0 chr4 53791611 53791657 -101838463 - L2a LINE L2 -276 3150 3105 4 995 222 295 13 13 chr4 53791647 53791726 -101838394 + L2a LINE L2 3305 3383 -43 4 995 238 274 115 10 chr4 53791788 53791884 -101838236 - L2a LINE L2 -333 3093 2988 4 995 351 0 0 0 chr4 53791911 53791950 -101838170 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 995 180 0 0 0 chr4 53791950 53791969 -101838151 + (CG)n Simple_repeat Simple_repeat 2 21 0 4 995 181 280 61 51 chr4 53792168 53792266 -101837854 - MER5A DNA MER1_type -9 180 82 4 995 409 220 0 42 chr4 53793936 53794102 -101836018 + T-rich Low_complexity Low_complexity 1 159 0 4 995 702 203 0 0 chr4 53794125 53794273 -101835847 + CT-rich Low_complexity Low_complexity 3 150 0 4 995 748 169 130 55 chr4 53794358 53794558 -101835562 - B3 SINE B2 0 216 2 4 995 235 291 229 8 chr4 53794597 53794715 -101835405 + Charlie4a DNA MER1_type 13 156 -352 4 995 376 279 93 136 chr4 53794891 53795244 -101834876 + Charlie4a DNA MER1_type 169 506 -2 4 995 186 133 0 0 chr4 53795603 53795633 -101834487 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 4 995 691 199 37 78 chr4 53796328 53796494 -101833626 - Tigger5 DNA MER2_type -51 2355 2197 4 995 1331 68 62 0 chr4 53796494 53796670 -101833450 - B2_Mm2 SINE B2 -7 188 2 4 995 691 199 37 78 chr4 53796670 53796694 -101833426 - Tigger5 DNA MER2_type -210 2196 2173 4 995 351 270 45 9 chr4 53796909 53797021 -101833099 - B1F SINE Alu -33 116 1 4 995 1276 118 11 0 chr4 53797047 53797234 -101832886 + B2_Mm1t SINE B2 1 189 -4 4 995 1009 243 9 18 chr4 53797969 53798187 -101831933 + ID_B1 SINE B4 1 216 -8 4 995 1217 104 27 16 chr4 53798339 53798524 -101831596 + B2_Mm2 SINE B2 1 187 -8 4 995 576 106 0 0 chr4 53800800 53800885 -101829235 + (GGA)n Simple_repeat Simple_repeat 3 87 0 4 995 180 263 34 34 chr4 53801210 53801269 -101828851 - MIRc SINE MIR -119 149 91 4 995 23 54 0 0 chr4 53801552 53801589 -101828531 + AT_rich Low_complexity Low_complexity 1 37 0 4 995 445 156 10 10 chr4 53801768 53801865 -101828255 + CT-rich Low_complexity Low_complexity 4 100 0 4 995 1326 180 26 4 chr4 53801896 53802164 -101827956 + RLTR11A2 LTR ERVK 254 527 0 4 995 464 195 0 0 chr4 53803203 53803285 -101826835 - ID4_ SINE ID 0 83 2 4 995 180 111 0 0 chr4 53803920 53803947 -101826173 + (A)n Simple_repeat Simple_repeat 1 27 0 4 995 1237 72 4 4 chr4 53804460 53804711 -101825409 + (TTTC)n Simple_repeat Simple_repeat 1 251 0 4 995 639 251 18 14 chr4 53804782 53804934 -101825186 + B3 SINE B2 1 167 -49 4 995 450 0 0 0 chr4 53804934 53804984 -101825136 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 995 264 122 0 0 chr4 53805026 53805067 -101825053 + (GGGAGA)n Simple_repeat Simple_repeat 6 46 0 4 995 249 108 0 0 chr4 53805252 53805289 -101824831 + (TATG)n Simple_repeat Simple_repeat 4 40 0 4 995 261 0 0 0 chr4 53805501 53805530 -101824590 + (TCTCTG)n Simple_repeat Simple_repeat 5 33 0 4 995 324 0 0 0 chr4 53805530 53805566 -101824554 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 995 258 299 83 7 chr4 53806218 53806363 -101823757 - L1MC LINE L1 -2375 5507 5352 4 995 816 169 22 0 chr4 53806539 53806675 -101823445 + B1_Mus1 SINE Alu 1 139 -9 4 995 1672 37 0 0 chr4 53806823 53807013 -101823107 - B2_Mm1t SINE B2 -1 192 3 4 995 552 179 0 0 chr4 53807131 53807243 -101822877 + GA-rich Low_complexity Low_complexity 2 113 0 4 995 271 333 30 42 chr4 53807690 53807856 -101822264 - ORR1E LTR MaLR -167 192 29 4 995 378 0 0 0 chr4 53808965 53809007 -101821113 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 995 254 293 48 12 chr4 53809060 53809143 -101820977 - B4A SINE B4 -136 156 71 4 995 631 306 56 39 chr4 53809143 53809361 -101820759 + B4A SINE B4 1 224 -68 4 995 225 0 0 0 chr4 53809361 53809386 -101820734 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 4 995 631 306 56 39 chr4 53809386 53809452 -101820668 + B4A SINE B4 225 290 -2 4 995 270 95 0 0 chr4 53809475 53809517 -101820603 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 995 225 178 44 0 chr4 53809752 53809797 -101820323 + T-rich Low_complexity Low_complexity 2 48 0 4 995 581 183 142 0 chr4 53810922 53811042 -101819078 - B1_Mus1 SINE Alu -10 138 2 4 995 330 333 18 9 chr4 53811182 53811291 -101818829 + ORR1E LTR MaLR 2 111 -248 4 995 1498 58 0 21 chr4 53811584 53811776 -101818344 - B2_Mm2 SINE B2 -7 188 1 4 995 216 267 0 0 chr4 53811935 53811980 -101818140 - PB1D10 SINE Alu -42 75 31 4 995 188 163 23 0 chr4 53813158 53813201 -101816919 + CT-rich Low_complexity Low_complexity 1 44 0 4 995 243 88 0 0 chr4 53813201 53813235 -101816885 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 995 787 145 50 21 chr4 53813254 53813395 -101816725 - B1_Mur4 SINE Alu -1 149 5 4 995 725 151 0 7 chr4 53813790 53813882 -101816238 + polypyrimidine Low_complexity Low_complexity 61 152 0 4 995 995 134 6 0 chr4 53813882 53814061 -101816059 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 4 995 725 151 0 7 chr4 53814061 53814121 -101815999 + polypyrimidine Low_complexity Low_complexity 1 60 0 4 995 731 159 61 0 chr4 53814306 53814438 -101815682 - B1_Mur4 SINE Alu 0 150 11 5 995 189 0 0 0 chr4 53814449 53814470 -101815650 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 995 1237 75 104 0 chr4 53814552 53814725 -101815395 - B2_Mm2 SINE B2 -3 192 2 5 995 402 21 0 0 chr4 53814816 53814863 -101815257 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 995 443 336 126 27 chr4 53814885 53815108 -101815012 - B4A SINE B4 -47 245 1 5 995 662 223 0 28 chr4 53815179 53815322 -101814798 - B1_Mur1 SINE Alu -10 139 1 5 995 813 238 47 5 chr4 53815724 53815914 -101814206 + B3A SINE B2 1 198 0 5 995 2443 70 64 0 chr4 53816150 53816462 -101813658 - IAPEY3_LTR LTR ERVK 0 332 1 5 995 3654 65 56 0 chr4 53816462 53817194 -101812926 - IAPEY3-int LTR ERVK 0 7680 6908 5 995 24520 91 10 5 chr4 53817194 53820456 -101809664 - IAPEY3-int LTR ERVK -4393 3287 10 5 995 485 75 12 70 chr4 53820454 53820540 -101809580 - IAPLTR4_I LTR ERVK -1368 102 22 5 995 2743 60 0 0 chr4 53820540 53820872 -101809248 - IAPEY3_LTR LTR ERVK 0 332 1 5 995 1409 63 20 26 chr4 53821451 53821646 -101808474 - B2_Mm2 SINE B2 0 195 2 5 995 750 270 103 5 chr4 53821979 53822202 -101807918 - MTEb LTR MaLR -126 253 9 5 995 320 233 115 11 chr4 53822438 53822525 -101807595 + PB1 SINE Alu 30 125 -2 5 995 1088 189 41 5 chr4 53822681 53822899 -101807221 + Lx5 LINE L1 6825 7050 0 5 995 36745 46 4 19 chr4 53823832 53829109 -101801011 + L1Md_A LINE L1 392 5586 -297 5 995 8655 31 0 0 chr4 53829109 53830104 -101800016 + L1Md_A LINE L1 5587 6581 -1 5 995 214 255 0 0 chr4 53830279 53830330 -101799790 + ID2 SINE ID 3 53 -30 5 995 340 254 29 0 chr4 53830746 53830851 -101799269 + PB1D9 SINE Alu 1 118 -2 5 995 238 279 28 19 chr4 53831540 53831646 -101798474 - L1MC LINE L1 -1345 4801 4695 5 995 1472 65 5 0 chr4 53831746 53831931 -101798189 - B2_Mm1t SINE B2 -7 186 1 5 995 854 124 15 0 chr4 53832418 53832555 -101797565 - B1_Mur4 SINE Alu 0 150 12 5 995 4669 114 29 50 chr4 53832555 53833314 -101796806 + Lx4A LINE L1 6314 7056 -2 5 995 256 204 0 0 chr4 53833704 53833753 -101796367 + ID_B1 SINE B4 130 178 -46 5 995 294 29 0 0 chr4 53833778 53833813 -101796307 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 995 2811 141 202 10 chr4 53834118 53834697 -101795423 - RMER6C LTR ERVK 0 690 1 5 995 285 146 0 0 chr4 53834773 53834821 -101795299 + (TTA)n Simple_repeat Simple_repeat 1 48 0 5 995 1860 125 116 6 chr4 53834821 53835150 -101794970 - ORR1B2 LTR MaLR -1 366 2 5 995 1198 74 84 17 chr4 53835245 53835424 -101794696 - B2_Mm1t SINE B2 -2 191 1 5 995 295 275 71 27 chr4 53835426 53835538 -101794582 - RSINE1 SINE B4 -47 118 2 5 995 299 239 74 99 chr4 53836001 53836122 -101793998 + MT2B LTR ERVL 147 264 -337 5 995 625 152 54 0 chr4 53836032 53836144 -101793976 + B1_Mus1 SINE Alu 18 135 -13 5 995 558 280 0 57 chr4 53836277 53836436 -101793684 + RSINE1 SINE B4 13 162 -3 5 995 227 295 19 112 chr4 53836825 53836910 -101793210 + MER20 DNA MER1_type 4 81 -138 5 995 291 54 0 0 chr4 53836910 53836947 -101793173 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 995 293 295 66 25 chr4 53836947 53837043 -101793077 + MER20 DNA MER1_type 82 215 -4 5 995 194 0 0 37 chr4 53837078 53837105 -101793015 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 995 25 0 0 0 chr4 53837572 53837597 -101792523 + AT_rich Low_complexity Low_complexity 1 25 0 5 995 234 231 0 0 chr4 53838809 53838861 -101791259 + C-rich Low_complexity Low_complexity 2 53 0 5 995 631 249 128 29 chr4 53839771 53840149 -101789971 + Charlie1b DNA MER1_type 6 425 -98 5 995 22 0 0 0 chr4 53840232 53840254 -101789866 + AT_rich Low_complexity Low_complexity 1 22 0 5 995 1210 112 45 0 chr4 53840868 53841047 -101789073 + B2_Mm2 SINE B2 2 188 -7 5 995 561 253 40 59 chr4 53841199 53841401 -101788719 - B3A SINE B2 0 198 1 5 995 626 309 60 34 chr4 53841482 53841747 -101788373 + B4A SINE B4 1 272 -20 5 995 309 26 0 0 chr4 53841760 53841798 -101788322 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 995 647 65 22 0 chr4 53842338 53842430 -101787690 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 5 995 504 223 27 0 chr4 53842450 53842562 -101787558 + PB1D10 SINE Alu 3 117 0 5 995 633 325 50 7 chr4 53842970 53843249 -101786871 - B4A SINE B4 0 292 2 5 995 30 0 0 0 chr4 53843304 53843334 -101786786 + AT_rich Low_complexity Low_complexity 1 30 0 5 995 278 203 58 0 chr4 53844054 53844123 -101785997 + B1F SINE Alu 67 139 -10 5 995 4313 70 6 0 chr4 53844362 53844903 -101785217 - L1_Mus1 LINE L1 -313 6254 5711 5 995 2392 50 7 13 chr4 53844903 53845208 -101784912 + L1_Mus1 LINE L1 6264 6566 -1 5 995 21 0 0 0 chr4 53845744 53845765 -101784355 + AT_rich Low_complexity Low_complexity 1 21 0 5 995 370 256 0 0 chr4 53845777 53845859 -101784261 + ID4_ SINE ID 1 82 -1 5 995 697 255 34 39 chr4 53845944 53846148 -101783972 - ID_B1 SINE B4 -5 219 17 5 995 434 236 137 65 chr4 53846830 53846998 -101783122 - B3A SINE B2 -17 181 2 5 995 468 48 0 0 chr4 53847226 53847289 -101782831 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 995 386 193 34 11 chr4 53847290 53847379 -101782741 - PB1D9 SINE Alu -29 91 1 5 995 222 37 0 0 chr4 53847382 53847409 -101782711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 995 359 200 234 32 chr4 53847416 53847540 -101782580 - B1_Mur1 SINE Alu 0 149 1 5 995 252 0 0 0 chr4 53847623 53847651 -101782469 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 995 779 162 174 25 chr4 53847698 53847894 -101782226 + URR1B DNA MER1_type 1 225 0 5 995 308 324 24 98 chr4 53847960 53848083 -101782037 + PB1D10 SINE Alu 5 118 -2 5 995 567 242 130 16 chr4 53848188 53848373 -101781747 - ID_B1 SINE B4 -16 208 3 5 995 226 365 70 0 chr4 53848701 53848816 -101781304 - MIRc SINE MIR -109 159 37 5 995 330 246 138 29 chr4 53849577 53849715 -101780405 + B4 SINE B4 57 209 -83 5 995 230 170 43 0 chr4 53850040 53850087 -101780033 + G-rich Low_complexity Low_complexity 5 53 0 5 995 840 92 0 0 chr4 53850758 53850877 -101779243 + (CA)n Simple_repeat Simple_repeat 2 120 0 5 995 611 215 0 0 chr4 53850901 53851022 -101779098 - MT2A LTR ERVL -410 123 3 5 995 515 237 29 36 chr4 53851232 53851372 -101778748 - RSINE1 SINE B4 -25 140 2 5 995 675 0 0 0 chr4 53851395 53851470 -101778650 + (TTCTC)n Simple_repeat Simple_repeat 1 75 0 5 995 702 0 0 0 chr4 53851472 53851550 -101778570 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 5 995 463 257 20 0 chr4 53851562 53851663 -101778457 - RSINE1 SINE B4 -61 104 2 5 995 3398 38 5 0 chr4 53851742 53852136 -101777984 - MTA_Mm LTR MaLR 0 396 1 5 995 1106 57 7 0 chr4 53852222 53852362 -101777758 + B1_Mus1 SINE Alu 1 141 -7 5 995 346 288 187 30 chr4 53852415 53852612 -101777508 + B4A SINE B4 1 231 -61 5 995 421 278 32 83 chr4 53852612 53852769 -101777351 + B1_Mur1 SINE Alu 1 149 0 5 995 245 164 0 83 chr4 53852769 53852793 -101777327 + B4A SINE B4 232 251 -41 5 995 220 274 13 27 chr4 53852920 53852995 -101777125 + RSINE1 SINE B4 8 81 -84 5 995 279 0 0 0 chr4 53854047 53854078 -101776042 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 995 603 194 73 0 chr4 53854084 53854208 -101775912 - B1_Mur2 SINE Alu -16 133 1 5 995 1427 66 38 0 chr4 53854234 53854417 -101775703 - B2_Mm2 SINE B2 -5 190 1 5 995 362 333 0 69 chr4 53854639 53854813 -101775307 + RSINE1 SINE B4 2 163 -2 5 995 1873 125 55 65 chr4 53855056 53855381 -101774739 - ORR1A3 LTR MaLR -4 322 1 5 995 324 0 0 0 chr4 53855984 53856020 -101774100 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 995 1135 49 14 0 chr4 53856020 53856162 -101773958 - B1_Mm SINE Alu -3 144 1 5 995 856 224 4 130 chr4 53856168 53856414 -101773706 - B3 SINE B2 0 216 2 5 995 252 376 94 11 chr4 53856920 53857186 -101772934 + L2 LINE L2 2702 2989 -430 5 995 306 125 0 0 chr4 53857307 53857355 -101772765 + (CAA)n Simple_repeat Simple_repeat 1 48 0 5 995 844 172 27 7 chr4 53859327 53859473 -101770647 + B1_Mur4 SINE Alu 2 150 0 5 995 1300 97 11 0 chr4 53859479 53859655 -101770465 + B2_Mm1t SINE B2 2 179 -14 5 995 323 105 310 26 chr4 53859726 53859842 -101770278 + B2_Mm2 SINE B2 47 195 0 5 995 1230 41 0 0 chr4 53860793 53860939 -101769181 - B1_Mus2 SINE Alu 0 147 2 5 995 23 54 0 0 chr4 53861697 53861734 -101768386 + AT_rich Low_complexity Low_complexity 1 37 0 5 995 825 155 20 11 chr4 53862095 53862276 -101767844 - B2_Mm2 SINE B2 -5 188 3 5 995 511 231 128 23 chr4 53862429 53862562 -101767558 + B1F1 SINE Alu 2 148 -1 5 995 221 140 0 23 chr4 53862654 53862698 -101767422 + CT-rich Low_complexity Low_complexity 1 43 0 5 995 485 45 54 33 chr4 53862693 53862785 -101767335 + (TCCCC)n Simple_repeat Simple_repeat 5 98 0 5 995 663 261 87 5 chr4 53862794 53862979 -101767141 - ID_B1 SINE B4 -3 221 22 5 995 1268 189 134 16 chr4 53863648 53863954 -101766166 + Lx5 LINE L1 6709 7050 0 5 995 508 223 225 18 chr4 53863974 53864143 -101765977 + B3 SINE B2 1 204 -12 5 995 238 304 108 39 chr4 53864410 53864540 -101765580 + MLT1-int LTR MaLR 1031 1169 -202 5 995 201 121 0 0 chr4 53864808 53864841 -101765279 + (TATG)n Simple_repeat Simple_repeat 4 36 0 5 995 1214 61 0 0 chr4 53865224 53865371 -101764749 - B1_Mus2 SINE Alu 0 147 1 5 995 376 239 54 0 chr4 53865804 53865896 -101764224 - PB1D7 SINE Alu -17 103 7 5 995 1892 153 85 3 chr4 53866170 53866536 -101763584 - MTC LTR MaLR 0 421 26 5 995 412 170 35 10 chr4 53866543 53866645 -101763475 + B3A SINE B2 30 133 -62 6 995 745 152 10 0 chr4 53866645 53866942 -101763178 + (TG)n Simple_repeat Simple_repeat 1 299 0 6 995 968 231 29 9 chr4 53868217 53868427 -101761693 - B3 SINE B2 0 216 3 6 995 7772 44 9 0 chr4 53868631 53869546 -101760574 + L1_Mus1 LINE L1 5645 6567 0 6 995 676 275 79 0 chr4 53869957 53870135 -101759985 + B3 SINE B2 25 216 0 6 995 25 0 0 0 chr4 53870136 53870161 -101759959 + AT_rich Low_complexity Low_complexity 1 25 0 6 124 2902 298 59 31 chr4 53870161 53871199 -101758921 - Lx8 LINE L1 -202 7271 6205 6 996 687 118 20 0 chr4 53871336 53871438 -101758682 + B3 SINE B2 1 104 -112 6 996 205 175 25 0 chr4 53872459 53872499 -101757621 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 996 1021 42 0 0 chr4 53873523 53873643 -101756477 + 5S rRNA rRNA 1 120 -1 6 996 469 187 99 36 chr4 53873786 53873897 -101756223 - PB1D7 SINE Alu -2 118 1 6 996 221 167 0 0 chr4 53874520 53874562 -101755558 + T-rich Low_complexity Low_complexity 1 42 0 6 996 189 107 0 0 chr4 53874902 53874930 -101755190 + (T)n Simple_repeat Simple_repeat 1 28 0 6 996 388 164 174 43 chr4 53875524 53875639 -101754481 + Lx7 LINE L1 6976 7105 -591 6 996 564 240 12 94 chr4 53875843 53875912 -101754208 - RSINE1 SINE B4 0 165 99 6 996 1374 84 21 0 chr4 53875912 53876103 -101754017 - B2_Mm2 SINE B2 0 195 1 6 996 564 240 12 94 chr4 53876103 53876203 -101753917 - RSINE1 SINE B4 -67 98 10 6 996 235 250 97 0 chr4 53876217 53876289 -101753831 - B4A SINE B4 -72 220 142 6 996 215 258 129 0 chr4 53876303 53876365 -101753755 - B4A SINE B4 -202 90 21 6 996 515 273 151 54 chr4 53876600 53876991 -101753129 - L1M5 LINE L1 -396 5768 5340 6 996 1793 109 58 19 chr4 53877214 53877524 -101752596 - RLTRETN_Mm LTR ERVK 0 322 1 6 996 746 173 8 0 chr4 53877903 53878030 -101752090 - B1_Mur3 SINE Alu -8 141 14 6 996 741 171 40 0 chr4 53878173 53878325 -101751795 + URR1A DNA MER1_type 34 191 -35 6 996 180 97 0 0 chr4 53878528 53878559 -101751561 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 6 996 1062 84 28 0 chr4 53878585 53878728 -101751392 - B1_Mus2 SINE Alu 0 147 1 6 996 300 333 0 0 chr4 53880532 53880622 -101749498 + Lx8 LINE L1 7101 7190 -283 6 996 360 0 0 0 chr4 53880859 53880899 -101749221 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 996 654 189 0 71 chr4 53880989 53881143 -101748977 - B3 SINE B2 -61 155 13 6 996 1222 223 92 102 chr4 53881146 53881616 -101748504 - Lx8 LINE L1 -835 6638 6174 6 996 634 308 138 6 chr4 53882246 53882573 -101747547 + MamRep605 Unknown Unknown 461 830 -46 6 996 1245 252 131 47 chr4 53882854 53883557 -101746563 - L1MC3 LINE L1 -1620 6165 5404 6 996 300 53 0 0 chr4 53883640 53883678 -101746442 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 996 284 273 0 0 chr4 53883695 53883761 -101746359 + MTE2b LTR MaLR 4 69 -310 6 996 333 262 23 31 chr4 53883888 53884018 -101746102 + MLT2C1 LTR ERVL 1 129 -268 6 996 423 0 0 0 chr4 53884062 53884109 -101746011 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 6 996 505 74 37 0 chr4 53884114 53884195 -101745925 - B2_Mm2 SINE B2 -14 181 98 6 996 1276 263 29 42 chr4 53884609 53884990 -101745130 - MTE2b LTR MaLR -3 376 1 6 996 663 273 70 4 chr4 53885299 53885527 -101744593 + MLT2C1 LTR ERVL 115 357 -40 6 996 292 231 133 7 chr4 53885546 53885681 -101744439 + L1M3 LINE L1 4369 4520 -1620 6 996 2832 108 64 33 chr4 53885696 53885989 -101744131 - RLTR13D2 LTR ERVK -7 1016 525 6 996 950 55 126 0 chr4 53885989 53886116 -101744004 + B1_Mus2 SINE Alu 2 144 -3 6 996 216 0 0 0 chr4 53886116 53886140 -101743980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 996 2832 181 92 55 chr4 53886140 53886619 -101743501 - RLTR13D2 LTR ERVK -284 739 2 6 996 421 235 9 9 chr4 53886625 53886741 -101743379 + L1M3 LINE L1 4536 4651 -1489 6 996 1129 259 103 24 chr4 53886750 53887130 -101742990 + ERVL-int LTR ERVL 4193 4602 -1155 6 996 207 194 0 0 chr4 53888309 53888345 -101741775 + CT-rich Low_complexity Low_complexity 1 36 0 6 996 1221 95 0 0 chr4 53888345 53888555 -101741565 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 6 996 445 235 82 0 chr4 53888555 53888653 -101741467 - PB1D9 SINE Alu -14 106 1 6 996 720 165 82 15 chr4 53888700 53888835 -101741285 - B1_Mus2 SINE Alu 0 147 4 6 996 257 275 0 81 chr4 53888842 53888929 -101741191 + MIR SINE MIR 98 177 -85 6 996 302 237 171 0 chr4 53889032 53889108 -101741012 - RSINE1 SINE B4 -61 104 16 6 996 202 277 299 43 chr4 53889324 53889441 -101740679 + MER5A DNA MER1_type 43 189 0 6 996 238 259 0 0 chr4 53890051 53890109 -101740011 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 996 869 212 0 0 chr4 53890126 53890272 -101739848 - B4 SINE B4 -6 286 141 6 996 731 156 0 13 chr4 53890311 53890467 -101739653 + GA-rich Low_complexity Low_complexity 5 158 0 6 996 1263 84 0 0 chr4 53890467 53890645 -101739475 + (GAA)n Simple_repeat Simple_repeat 3 180 0 6 996 231 250 78 0 chr4 53890667 53890731 -101739389 - B4 SINE B4 -223 69 1 6 996 343 219 25 139 chr4 53891290 53891412 -101738708 + L2c LINE L2 3278 3385 -2 6 996 340 295 148 26 chr4 53891515 53891745 -101738375 - AmnSINE1 SINE SINE -174 401 144 6 996 282 56 0 0 chr4 53891974 53892010 -101738110 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 996 360 0 0 0 chr4 53892096 53892136 -101737984 + (T)n Simple_repeat Simple_repeat 1 40 0 6 996 221 231 135 0 chr4 53893435 53893487 -101736633 - ID4_ SINE ID 0 83 25 6 996 210 218 123 35 chr4 53893436 53893493 -101736627 - ID SINE ID -141 83 22 6 996 333 125 0 0 chr4 53893516 53893572 -101736548 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 996 1077 271 38 15 chr4 53893574 53893614 -101736506 - B4A SINE B4 -23 269 227 6 996 1377 90 11 0 chr4 53893614 53893803 -101736317 - B2_Mm1t SINE B2 -1 192 2 6 996 1077 271 38 15 chr4 53893803 53893820 -101736300 - B4A SINE B4 -66 226 209 6 996 432 0 0 0 chr4 53893820 53893868 -101736252 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 996 1077 271 38 15 chr4 53893868 53894071 -101736049 - B4A SINE B4 -84 208 5 6 996 262 102 16 33 chr4 53894344 53894405 -101735715 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 6 996 385 235 12 0 chr4 53894405 53894490 -101735630 + B4A SINE B4 197 282 -10 6 996 249 119 0 0 chr4 53894490 53894532 -101735588 + (CTCA)n Simple_repeat Simple_repeat 1 42 0 6 996 277 299 127 73 chr4 53895222 53895734 -101734386 - L2a LINE L2 -55 3371 2802 6 996 480 294 27 62 chr4 53896761 53896970 -101733150 - B3A SINE B2 -2 214 8 6 996 474 268 105 18 chr4 53897047 53897205 -101732915 + ORR1E LTR MaLR 1 185 -174 6 996 1064 211 8 73 chr4 53897282 53897543 -101732577 - MTD LTR MaLR -175 244 1 6 996 22 0 0 0 chr4 53898202 53898224 -101731896 + AT_rich Low_complexity Low_complexity 1 22 0 6 996 469 310 0 20 chr4 53900099 53900247 -101729873 + B4A SINE B4 125 269 -23 6 996 255 79 0 0 chr4 53900303 53900341 -101729779 + (CATA)n Simple_repeat Simple_repeat 3 40 0 6 996 1406 105 16 0 chr4 53900505 53900696 -101729424 + B2_Mm2 SINE B2 2 195 0 6 996 22 35 0 0 chr4 53901037 53901066 -101729054 + AT_rich Low_complexity Low_complexity 1 29 0 6 996 811 239 28 18 chr4 53901243 53901460 -101728660 + ID_B1 SINE B4 2 220 -4 6 996 338 275 63 35 chr4 53901504 53901647 -101728473 - MER5A DNA MER1_type -25 164 18 6 996 630 145 0 0 chr4 53901961 53902085 -101728035 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 996 315 0 0 0 chr4 53902086 53902121 -101727999 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 996 3177 96 0 16 chr4 53902749 53903195 -101726925 + Lx3A LINE L1 6539 6977 -4 6 996 1312 73 0 53 chr4 53903353 53903542 -101726578 - B2_Mm2 SINE B2 -15 180 2 6 996 274 350 36 60 chr4 53904039 53904206 -101725914 + LTR85c LTR Gypsy? 638 800 -23 6 996 307 303 146 60 chr4 53904218 53904520 -101725600 + L1MB8 LINE L1 4924 5251 -895 6 996 414 255 0 10 chr4 53904538 53904641 -101725479 + L1MB8 LINE L1 5319 5420 -760 6 996 474 231 89 23 chr4 53904793 53905006 -101725114 + L1MB8 LINE L1 5652 5876 -298 6 996 334 242 15 0 chr4 53905012 53905078 -101725042 + ID SINE ID 2 68 -156 6 996 529 297 151 0 chr4 53905090 53905329 -101724791 + L1MB8 LINE L1 5904 6178 0 6 996 1388 161 4 18 chr4 53905616 53905844 -101724276 + URR1B DNA MER1_type 1 225 0 6 996 1045 182 173 49 chr4 53905914 53906105 -101724015 - RMER17C LTR ERVK 0 410 227 6 996 690 65 0 0 chr4 53906105 53906197 -101723923 + (GGA)n Simple_repeat Simple_repeat 1 92 0 6 996 1045 182 173 49 chr4 53906197 53906370 -101723750 - RMER17C LTR ERVK -184 226 2 6 996 644 316 131 70 chr4 53906825 53907169 -101722951 - Tigger5 DNA MER2_type -1 365 1 6 996 251 344 141 36 chr4 53907661 53907881 -101722239 + MIR SINE MIR 8 250 -12 6 996 234 150 0 0 chr4 53907932 53907972 -101722148 + (CACCAT)n Simple_repeat Simple_repeat 2 41 0 6 996 473 306 20 7 chr4 53908021 53908169 -101721951 + HAL1-2a_MD LINE L1 2340 2489 -535 6 996 656 35 23 0 chr4 53908881 53908967 -101721153 + (TCCC)n Simple_repeat Simple_repeat 2 89 0 6 996 180 111 0 0 chr4 53908968 53908995 -101721125 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 996 992 199 61 0 chr4 53910733 53910929 -101719191 - ORR1D1 LTR MaLR 0 374 167 6 996 395 83 0 16 chr4 53910929 53910990 -101719130 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 6 996 972 156 11 55 chr4 53910991 53911174 -101718946 - ORR1D1 LTR MaLR -193 181 7 6 996 232 286 105 42 chr4 53911756 53911851 -101718269 + RMER4B LTR ERVK 458 558 -27 6 996 432 279 17 13 chr4 53911851 53912157 -101717963 + GA-rich Low_complexity Low_complexity 1 307 0 6 996 944 133 15 0 chr4 53913053 53913188 -101716932 + B1_Mur2 SINE Alu 2 138 -11 6 996 687 44 0 0 chr4 53913188 53913279 -101716841 + (CAAAC)n Simple_repeat Simple_repeat 2 92 0 6 996 395 184 11 0 chr4 53913941 53914028 -101716092 + (TCTG)n Simple_repeat Simple_repeat 1 88 0 6 996 636 268 0 0 chr4 53914030 53914168 -101715952 - B1F SINE Alu -6 143 6 6 996 200 237 216 0 chr4 53914613 53914710 -101715410 + MIRb SINE MIR 81 198 -70 6 996 311 226 103 56 chr4 53915585 53915730 -101714390 - MIRb SINE MIR -96 166 5 7 996 422 309 115 42 chr4 53916406 53916693 -101713427 + Lx8 LINE L1 6988 7295 -178 7 996 441 245 163 14 chr4 53916827 53916968 -101713152 + RSINE1 SINE B4 2 163 -2 7 996 222 294 118 11 chr4 53917113 53917206 -101712914 + MIRb SINE MIR 123 225 -43 7 996 459 268 21 21 chr4 53917531 53917672 -101712448 + B1F SINE Alu 5 145 -4 7 996 240 219 15 15 chr4 53918142 53918207 -101711913 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 996 3524 251 127 13 chr4 53919120 53920365 -101709755 + RMER1A Other Other 15 1026 -4 7 996 243 245 41 0 chr4 53921279 53921328 -101708792 + ID SINE ID 29 79 -145 7 996 302 342 83 26 chr4 53921511 53921594 -101708526 + L2a LINE L2 3224 3310 -116 7 996 183 80 0 0 chr4 53921594 53921619 -101708501 + (CAAAG)n Simple_repeat Simple_repeat 3 27 0 7 996 302 342 83 26 chr4 53921619 53921727 -101708393 + L2a LINE L2 3311 3426 0 7 996 352 333 13 74 chr4 53922132 53922281 -101707839 + MTEa LTR MaLR 19 158 -221 7 996 186 71 0 0 chr4 53922468 53922496 -101707624 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 996 289 323 60 87 chr4 53922640 53922823 -101707297 + RLTR41 LTR ERV1 194 371 -75 7 996 1152 50 0 7 chr4 53922825 53922965 -101707155 + B1_Mus1 SINE Alu 1 139 -9 7 996 441 50 0 0 chr4 53922965 53923025 -101707095 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 7 996 543 285 9 99 chr4 53923096 53923318 -101706802 + MTEa LTR MaLR 153 354 -25 7 996 531 317 123 1 chr4 53923347 53923571 -101706549 + MIR SINE MIR 17 259 -3 7 996 203 338 37 56 chr4 53923598 53923705 -101706415 - L2c LINE L2 -12 3363 3277 7 996 2283 185 15 7 chr4 53924114 53924522 -101705598 - MTD LTR MaLR -8 411 1 7 996 303 328 64 0 chr4 53925142 53925346 -101704774 + L1MC4 LINE L1 7293 7509 -533 7 996 1341 68 0 0 chr4 53925705 53925882 -101704238 + (TTCTCC)n Simple_repeat Simple_repeat 4 180 0 7 996 510 17 0 0 chr4 53925882 53925941 -101704179 + (TCC)n Simple_repeat Simple_repeat 3 61 0 7 996 242 297 88 10 chr4 53925941 53925955 -101704165 + MER77 LTR ERVL 470 488 -119 7 996 1079 103 7 0 chr4 53925955 53926101 -101704019 - B1_Mus1 SINE Alu 0 148 2 7 996 242 297 88 10 chr4 53926101 53926188 -101703932 + MER77 LTR ERVL 489 578 -29 7 996 486 308 121 62 chr4 53926293 53926774 -101703346 + L1MC4 LINE L1 7523 8031 -11 7 996 384 306 45 45 chr4 53926811 53926965 -101703155 + L1MC3 LINE L1 6728 6881 -1114 7 996 321 326 219 36 chr4 53926985 53927122 -101702998 + RSINE1 SINE B4 4 165 0 7 996 885 250 203 35 chr4 53927137 53927601 -101702519 + L1MC3 LINE L1 7031 7572 -213 7 996 180 0 0 0 chr4 53927824 53927844 -101702276 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 7 996 602 227 32 8 chr4 53928687 53928812 -101701308 + B1F SINE Alu 9 138 -11 7 996 473 0 18 0 chr4 53928812 53928869 -101701251 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 7 996 457 200 38 0 chr4 53929984 53930064 -101700056 + MTE2b LTR MaLR 16 98 -281 7 996 433 358 19 19 chr4 53930058 53930212 -101699908 + MTE2b LTR MaLR 52 205 -174 7 996 2346 238 102 15 chr4 53930221 53930830 -101699290 + MTE-int LTR MaLR 795 1456 -124 7 996 218 239 126 74 chr4 53931575 53931670 -101698450 - MIRc SINE MIR -49 219 120 7 996 341 267 0 136 chr4 53931776 53931945 -101698175 + B1F2 SINE Alu 2 147 -2 7 996 263 284 0 12 chr4 53931951 53932033 -101698087 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 996 301 132 0 70 chr4 53932033 53932090 -101698030 + HAL1-3A_ME LINE L1 1976 2028 -830 7 996 537 64 0 0 chr4 53932090 53932168 -101697952 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 996 678 265 31 31 chr4 53933696 53933918 -101696202 + ID_B1 SINE B4 1 222 -2 7 996 358 214 0 0 chr4 53934039 53934109 -101696011 - ID4_ SINE ID -13 70 1 7 996 708 247 76 9 chr4 53935313 53935531 -101694589 + ORR1D2 LTR MaLR 3 238 -140 7 996 824 262 15 19 chr4 53935534 53935740 -101694380 + ORR1D2 LTR MaLR 166 370 0 7 996 414 393 37 12 chr4 53935787 53936032 -101694088 + LTR16A LTR ERVL 193 443 -8 7 996 1254 116 0 32 chr4 53936281 53936468 -101693652 - B2_Mm2 SINE B2 -14 181 1 7 996 242 316 48 39 chr4 53936593 53936754 -101693366 + L2a LINE L2 3030 3193 -194 7 996 274 368 86 12 chr4 53936921 53937177 -101692943 - L1M5 LINE L1 -521 5603 5329 7 996 186 43 0 0 chr4 53937212 53937235 -101692885 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 7 996 207 380 48 6 chr4 53937587 53937754 -101692366 + L3 LINE CR1 4125 4298 -191 7 996 306 321 0 7 chr4 53937898 53938013 -101692107 + MIRc SINE MIR 66 180 -96 7 996 794 265 10 34 chr4 53938498 53938705 -101691415 + B3A SINE B2 1 202 -14 7 996 306 286 0 21 chr4 53939314 53939407 -101690713 + L2a LINE L2 3336 3426 0 7 996 232 342 152 70 chr4 53940138 53940481 -101689639 + MLT1A LTR MaLR 1 371 -3 7 996 765 307 118 62 chr4 53940529 53940963 -101689157 + MT2A LTR ERVL 1 458 -75 7 996 380 71 18 0 chr4 53940991 53941047 -101689073 + (TCTCCC)n Simple_repeat Simple_repeat 5 61 0 7 996 750 50 0 0 chr4 53941048 53941147 -101688973 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 996 308 274 131 89 chr4 53941201 53941369 -101688751 - MIRb SINE MIR -92 176 2 7 996 398 279 125 27 chr4 53941518 53941702 -101688418 - B4A SINE B4 -84 208 7 7 996 220 255 95 18 chr4 53942175 53942247 -101687873 - MIRm SINE MIR -57 211 129 7 996 294 330 58 67 chr4 53942760 53942880 -101687240 + MER45A DNA Tip100 1 119 -59 7 996 21 36 0 0 chr4 53943139 53943167 -101686953 + AT_rich Low_complexity Low_complexity 1 28 0 7 996 191 295 24 49 chr4 53943537 53943619 -101686501 - L2a LINE L2 -91 3335 3256 7 996 315 0 0 0 chr4 53944331 53944366 -101685754 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 996 648 224 186 0 chr4 53945470 53945653 -101684467 + ID_B1 SINE B4 2 218 -6 7 996 276 53 0 0 chr4 53945661 53945699 -101684421 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 7 996 438 20 0 0 chr4 53945828 53945879 -101684241 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 996 180 0 0 0 chr4 53945879 53945898 -101684222 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 996 470 319 54 82 chr4 53945950 53946230 -101683890 - B4A SINE B4 -10 282 11 7 996 1269 86 0 0 chr4 53946458 53946969 -101683151 + (GGA)n Simple_repeat Simple_repeat 1 511 0 7 996 28 0 0 0 chr4 53947131 53947159 -101682961 + AT_rich Low_complexity Low_complexity 1 28 0 7 996 389 239 8 0 chr4 53947193 53947310 -101682810 + (CATA)n Simple_repeat Simple_repeat 1 118 0 7 996 26 0 0 0 chr4 53947441 53947467 -101682653 + AT_rich Low_complexity Low_complexity 1 26 0 7 996 1458 92 153 4 chr4 53947467 53947695 -101682425 - Lx2 LINE L1 0 6997 6736 7 996 309 390 58 31 chr4 53947771 53948253 -101681867 + L2 LINE L2 2497 2991 -428 7 996 1098 256 75 16 chr4 53948573 53948891 -101681229 - MTE2b LTR MaLR -38 341 5 7 996 1112 96 167 0 chr4 53948993 53949191 -101680929 - Lx LINE L1 -5 6649 6419 7 996 1186 68 0 0 chr4 53949295 53949442 -101680678 - B1_Mus2 SINE Alu 0 147 1 7 996 229 308 59 25 chr4 53949456 53949659 -101680461 - L1M5 LINE L1 -594 5600 5391 7 996 218 237 10 58 chr4 53949661 53949764 -101680356 + T-rich Low_complexity Low_complexity 2 99 0 7 996 844 142 49 0 chr4 53949824 53949986 -101680134 + ORR1B1 LTR MaLR 184 353 -41 7 996 813 58 0 0 chr4 53949986 53950090 -101680030 - L1Md_F2 LINE L1 -559 6023 5920 7 996 4627 45 0 5 chr4 53950091 53950651 -101679469 + L1Md_F2 LINE L1 6023 6579 -3 7 996 337 100 0 0 chr4 53950651 53950701 -101679419 + ORR1B1 LTR MaLR 345 394 0 7 996 4112 262 82 52 chr4 53950701 53950989 -101679131 + Lx7 LINE L1 5902 6188 -1508 7 996 234 0 0 0 chr4 53950989 53951015 -101679105 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 996 4112 262 82 52 chr4 53951015 53952020 -101678100 + Lx7 LINE L1 6189 7234 -462 7 996 2914 68 199 12 chr4 53952022 53952453 -101677667 - RLTR1B LTR ERV1 0 512 1 7 996 68123 18 0 6 chr4 53952453 53952594 -101677526 - MMERGLN-int LTR ERV1 0 7556 7455 7 996 1286 14 0 0 chr4 53952594 53952740 -101677380 - B1_Mm SINE Alu 0 147 2 7 996 68123 18 0 6 chr4 53952740 53960194 -101669926 - MMERGLN-int LTR ERV1 -102 7454 1 7 996 2961 66 200 9 chr4 53960194 53960624 -101669496 - RLTR1B LTR ERV1 0 512 1 7 996 455 215 0 21 chr4 53960624 53960719 -101669401 + Lx7 LINE L1 7233 7325 -371 7 996 486 0 0 0 chr4 53960770 53960824 -101669296 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 996 839 260 30 5 chr4 53960925 53961126 -101668994 - B3 SINE B2 -10 206 1 7 996 770 197 0 27 chr4 53961177 53961323 -101668797 + B1_Mur4 SINE Alu 2 143 -7 7 996 378 301 153 40 chr4 53962519 53962768 -101667352 - MLT1L LTR MaLR -322 288 12 7 996 399 41 0 0 chr4 53963085 53963134 -101666986 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 996 198 0 0 0 chr4 53963648 53963670 -101666450 + (G)n Simple_repeat Simple_repeat 1 22 0 7 996 405 0 0 0 chr4 53964151 53964196 -101665924 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 996 376 214 9 9 chr4 53964196 53964309 -101665811 + GA-rich Low_complexity Low_complexity 4 116 0 7 996 186 43 0 0 chr4 53964989 53965012 -101665108 + (TCC)n Simple_repeat Simple_repeat 2 24 0 7 996 250 348 7 42 chr4 53965527 53965671 -101664449 - L3 LINE CR1 -24 4465 4327 7 996 187 273 225 11 chr4 53965698 53965787 -101664333 - MIRb SINE MIR -38 230 123 7 996 291 54 0 0 chr4 53966677 53966714 -101663406 + (T)n Simple_repeat Simple_repeat 1 37 0 7 996 7704 48 2 16 chr4 53966732 53967685 -101662435 + L1Md_T LINE L1 5630 6569 -13 7 996 657 233 75 32 chr4 53967889 53968075 -101662045 - MTE2b LTR MaLR -4 375 182 7 996 207 0 0 0 chr4 53968075 53968098 -101662022 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 996 414 140 53 0 chr4 53968098 53968212 -101661908 + (TA)n Simple_repeat Simple_repeat 1 120 0 7 996 1316 89 21 21 chr4 53968262 53968456 -101661664 - B2_Mm2 SINE B2 0 195 2 7 996 198 337 20 30 chr4 53968503 53968604 -101661516 + MIR SINE MIR 28 127 -81 7 996 1537 53 0 16 chr4 53969068 53969260 -101660860 - B2_Mm1a SINE B2 -3 190 2 7 996 180 262 0 0 chr4 53969569 53969611 -101660509 + MIR SINE MIR 216 257 -5 7 996 630 215 72 50 chr4 53969718 53969899 -101660221 + ORR1D1 LTR MaLR 1 185 -189 7 996 565 299 99 33 chr4 53970179 53970483 -101659637 + MLT1A0 LTR MaLR 23 346 -19 7 996 428 344 81 40 chr4 53971414 53971883 -101658237 - MLT1H LTR MaLR 0 549 1 8 996 709 309 64 27 chr4 53971916 53972245 -101657875 - L1ME4a LINE L1 -264 5860 5520 8 996 224 214 0 0 chr4 53972588 53972630 -101657490 + (TATG)n Simple_repeat Simple_repeat 3 44 0 8 996 208 339 0 0 chr4 53972700 53972765 -101657355 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 996 658 160 67 0 chr4 53972840 53972959 -101657161 - B3 SINE B2 -86 130 4 8 996 300 306 0 0 chr4 53973239 53973324 -101656796 - MER33 DNA MER1_type -206 118 34 8 996 228 35 0 0 chr4 53973410 53973439 -101656681 + (T)n Simple_repeat Simple_repeat 1 29 0 8 996 1236 55 0 0 chr4 53973440 53973586 -101656534 - B1_Mus2 SINE Alu 0 147 2 8 996 182 62 31 0 chr4 53973728 53973760 -101656360 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8 996 217 246 51 34 chr4 53974172 53974231 -101655889 - MIRc SINE MIR -118 150 91 8 996 387 0 0 0 chr4 53974860 53974903 -101655217 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 996 324 276 105 0 chr4 53974909 53975014 -101655106 - B3A SINE B2 -79 119 4 8 996 676 272 25 49 chr4 53975014 53975245 -101654875 - B4A SINE B4 -66 226 2 8 996 257 254 0 16 chr4 53975280 53975344 -101654776 - MLT1G3 LTR MaLR -532 63 1 8 996 210 71 0 0 chr4 53976896 53976924 -101653196 + (GGA)n Simple_repeat Simple_repeat 1 28 0 8 996 321 26 0 0 chr4 53976934 53976972 -101653148 + (ATG)n Simple_repeat Simple_repeat 3 40 0 8 996 255 61 0 0 chr4 53976972 53977004 -101653116 + (CAG)n Simple_repeat Simple_repeat 2 34 0 8 996 480 291 52 0 chr4 53977012 53977146 -101652974 + ID_B1 SINE B4 84 224 0 8 996 208 211 0 27 chr4 53977148 53977221 -101652899 + A-rich Low_complexity Low_complexity 2 72 0 8 996 784 246 94 0 chr4 53977639 53977842 -101652278 - ID_B1 SINE B4 -1 223 2 8 996 2777 58 5 15 chr4 53978051 53978440 -101651680 - MTA_Mm LTR MaLR 0 396 12 8 996 10551 157 23 6 chr4 53978824 53980984 -101649136 + L1VL4 LINE L1 880 3091 -2795 8 996 2949 136 72 14 chr4 53980981 53981480 -101648640 + L1VL4 LINE L1 5185 5712 -174 8 996 910 152 101 2 chr4 53981480 53981664 -101648456 - RLTR20A LTR ERVK -352 225 1 8 996 670 246 74 11 chr4 53981668 53981857 -101648263 - B4A SINE B4 -90 202 2 8 996 189 300 27 41 chr4 53982999 53983072 -101647048 - MIRc SINE MIR -113 155 84 8 996 312 27 0 0 chr4 53983936 53983973 -101646147 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 996 529 266 82 6 chr4 53983988 53984158 -101645962 - B3A SINE B2 -15 183 1 8 996 1235 54 0 0 chr4 53984326 53984474 -101645646 + B1_Mus1 SINE Alu 1 148 0 8 996 225 0 0 0 chr4 53984474 53984499 -101645621 + (A)n Simple_repeat Simple_repeat 1 25 0 8 996 1036 351 28 46 chr4 53985265 53985805 -101644315 + MLT1H1 LTR MaLR 26 555 0 8 996 195 361 37 22 chr4 53985816 53985952 -101644168 + L2b LINE L2 3267 3417 -9 8 996 1701 208 74 8 chr4 53986123 53986516 -101643604 - MTD LTR MaLR 0 419 1 8 996 342 0 0 0 chr4 53986584 53986622 -101643498 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 996 473 188 12 0 chr4 53987667 53987747 -101642373 - B1_Mus1 SINE Alu -67 81 1 8 996 329 229 0 88 chr4 53987747 53987758 -101642362 - MT2B LTR ERVL -364 237 155 8 996 239 319 130 17 chr4 53987879 53987994 -101642126 - MLT1K LTR MaLR -322 273 146 8 996 476 311 43 14 chr4 53988214 53988423 -101641697 - B3 SINE B2 0 216 2 8 996 545 244 36 29 chr4 53988549 53988688 -101641432 - B1_Mus1 SINE Alu -5 143 4 8 996 593 243 19 50 chr4 53988720 53988909 -101641211 + B1F SINE Alu 3 305 -6 8 996 249 282 13 0 chr4 53989969 53990047 -101640073 - MIRb SINE MIR -90 178 100 8 996 843 212 41 5 chr4 53990216 53990410 -101639710 + ORR1D2 LTR MaLR 170 370 0 8 996 188 214 18 0 chr4 53990487 53990543 -101639577 + CT-rich Low_complexity Low_complexity 2 58 0 8 996 350 312 70 0 chr4 53990552 53990680 -101639440 - B1F2 SINE Alu 0 149 13 8 996 446 285 23 23 chr4 53990566 53990699 -101639421 - ID_B1 SINE B4 -14 210 78 8 996 291 289 36 36 chr4 53991170 53991310 -101638810 - MLT1H LTR MaLR -1 548 409 8 996 4517 216 57 11 chr4 53991901 53993136 -101636984 + RMER1A Other Other 41 1026 -4 8 996 1021 89 112 6 chr4 53993248 53993418 -101636702 + B2_Mm2 SINE B2 8 195 0 8 996 817 232 58 48 chr4 53993687 53993895 -101636225 + B3 SINE B2 3 212 -4 8 996 21284 90 37 14 chr4 53993966 53996787 -101633333 + Lx3_Mus LINE L1 230 3482 -2404 8 996 1189 42 0 0 chr4 53996787 53996929 -101633191 + B1_Mus1 SINE Alu 1 142 -6 8 996 207 0 0 0 chr4 53996932 53996955 -101633165 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 996 21284 79 13 15 chr4 53996955 53997730 -101632390 + Lx3_Mus LINE L1 3483 4228 -1658 8 996 10083 79 11 2 chr4 53997697 53999302 -101630818 + Lx3_Mus LINE L1 5391 7009 0 8 996 212 341 0 0 chr4 53999420 53999590 -101630530 + (CTCTG)n Simple_repeat Simple_repeat 4 173 0 8 996 311 289 0 43 chr4 53999520 53999708 -101630412 + (CAGCT)n Simple_repeat Simple_repeat 1 180 0 8 996 414 272 111 20 chr4 54000359 54000558 -101629562 + L1MC3 LINE L1 7346 7562 -223 1 996 220 306 112 20 chr4 54001005 54001202 -101628918 + MIR SINE MIR 13 227 -35 2 996 459 125 0 0 chr4 54001262 54001334 -101628786 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 996 479 277 131 6 chr4 54001348 54001508 -101628612 - B4A SINE B4 -14 278 99 4 124 4095 166 7 29 chr4 54001522 54002325 -101627795 - RMER1B Other Other -5 1061 212 5 997 291 268 11 11 chr4 54002333 54002420 -101627700 - B4A SINE B4 -204 88 2 4 997 344 316 43 37 chr4 54002471 54002635 -101627485 - L1M5 LINE L1 -3019 3127 2963 6 997 25 65 0 0 chr4 54002721 54002767 -101627353 + AT_rich Low_complexity Low_complexity 1 46 0 7 997 694 295 62 19 chr4 54002774 54003033 -101627087 + B4A SINE B4 1 270 -22 8 997 285 29 0 0 chr4 54003074 54003108 -101627012 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 997 531 45 0 0 chr4 54003538 54003604 -101626516 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 997 523 269 62 7 chr4 54003604 54003750 -101626370 - B3A SINE B2 -44 154 1 1 997 753 278 23 0 chr4 54004269 54004445 -101625675 + B3A SINE B2 3 182 -16 1 997 478 301 10 16 chr4 54005145 54005345 -101624775 - MLT2B2 LTR ERVL -64 498 210 1 997 1011 125 0 0 chr4 54005414 54005711 -101624409 + (CA)n Simple_repeat Simple_repeat 1 297 0 1 997 268 241 133 54 chr4 54005986 54006180 -101623940 - L1M4 LINE L1 -730 5434 5213 1 997 784 224 62 24 chr4 54006216 54006426 -101623694 - ID_B1 SINE B4 -4 220 3 1 997 798 254 51 129 chr4 54006492 54006755 -101623365 + MTE2b LTR MaLR 1 247 -132 1 997 1142 82 0 14 chr4 54006755 54006903 -101623217 - B1_Mus1 SINE Alu -1 147 2 1 997 798 254 51 129 chr4 54006903 54007050 -101623070 + MTE2b LTR MaLR 248 379 0 1 997 369 330 82 48 chr4 54007073 54007449 -101622671 - L1M4 LINE L1 -1029 5117 4729 1 997 280 287 22 22 chr4 54007478 54007567 -101622553 - PB1D10 SINE Alu 0 117 29 1 997 267 318 46 20 chr4 54007589 54007740 -101622380 - L1M4 LINE L1 -1542 4604 4450 1 997 264 256 0 71 chr4 54007955 54008039 -101622081 - L1MD LINE L1 -1813 4333 4256 2 997 262 244 38 25 chr4 54008154 54008234 -101621886 - L1M4 LINE L1 -2071 4075 3995 1 997 253 128 0 0 chr4 54008277 54008316 -101621804 - L1M4 LINE L1 -2259 3887 3849 1 997 532 248 13 16 chr4 54008487 54008640 -101621480 - MTEa LTR MaLR -17 362 196 2 997 315 0 0 0 chr4 54008640 54008675 -101621445 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 997 405 323 51 59 chr4 54008675 54008761 -101621359 - MTEa LTR MaLR -164 195 109 2 997 257 330 85 0 chr4 54008772 54008878 -101621242 - RMER30 DNA MER1_type -6 196 82 2 997 228 67 0 0 chr4 54008899 54008929 -101621191 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 997 636 224 0 0 chr4 54008941 54009111 -101621009 + (TG)n Simple_repeat Simple_repeat 1 170 0 2 997 886 188 101 11 chr4 54009333 54009521 -101620599 - B3 SINE B2 -8 208 4 2 997 243 131 38 188 chr4 54009778 54009863 -101620257 - L1MEe LINE L1 -4642 1366 1296 2 997 385 238 69 10 chr4 54010118 54010220 -101619900 - PB1D10 SINE Alu -8 109 2 2 997 563 60 12 0 chr4 54010330 54010414 -101619706 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 997 1064 115 0 0 chr4 54010414 54010571 -101619549 - B2_Mm2 SINE B2 -38 157 1 3 997 27 0 0 0 chr4 54011268 54011295 -101618825 + AT_rich Low_complexity Low_complexity 1 27 0 3 997 371 290 22 90 chr4 54011546 54011868 -101618252 - L1M2 LINE L1 -2602 3541 3242 3 997 318 324 113 42 chr4 54013463 54013676 -101616444 + MT2A LTR ERVL 1 228 -305 3 997 31 0 0 0 chr4 54014747 54014778 -101615342 + AT_rich Low_complexity Low_complexity 1 31 0 3 997 734 210 0 21 chr4 54014790 54014931 -101615189 - B1_Mur1 SINE Alu -10 139 2 3 997 543 298 53 6 chr4 54015439 54015608 -101614512 + MER58A DNA MER1_type 31 207 -17 3 997 290 315 126 63 chr4 54015683 54015873 -101614247 + ORR1D2 LTR MaLR 2 203 -167 3 997 696 182 36 14 chr4 54015880 54016019 -101614101 + B1_Mur3 SINE Alu 1 142 -7 3 997 1674 308 60 22 chr4 54016227 54016858 -101613262 + ORR1E-int LTR MaLR 2 656 -924 3 997 1410 238 88 51 chr4 54017453 54017998 -101612122 + RMER1B Other Other 2 551 -515 4 997 2554 258 95 31 chr4 54017998 54019201 -101610919 + RMER1A Other Other 1 959 -107 4 997 672 48 0 0 chr4 54019201 54019285 -101610835 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 997 2067 241 92 65 chr4 54019285 54019391 -101610729 + RMER1B Other Other 960 1066 0 4 997 1366 293 70 42 chr4 54019494 54020024 -101610096 + ORR1E-int LTR MaLR 810 1354 -226 3 997 787 250 78 24 chr4 54020059 54020264 -101609856 - B3A SINE B2 0 216 1 4 997 192 152 0 0 chr4 54020288 54020321 -101609799 + CT-rich Low_complexity Low_complexity 1 33 0 4 997 418 333 51 5 chr4 54020355 54020526 -101609594 + ORR1E-int LTR MaLR 1348 1527 -53 3 997 383 332 54 11 chr4 54020526 54020712 -101609408 + ORR1E LTR MaLR 1 194 -165 3 997 465 120 44 22 chr4 54020801 54020937 -101609183 + (TG)n Simple_repeat Simple_repeat 2 140 0 4 997 186 306 117 48 chr4 54020937 54021040 -101609080 - MIR SINE MIR -152 110 1 4 997 314 342 71 51 chr4 54021208 54021519 -101608601 + MLT1A0 LTR MaLR 1 317 -48 4 997 416 332 96 25 chr4 54021643 54021924 -101608196 + MLT1K LTR MaLR 13 313 -282 4 997 2672 102 17 2 chr4 54022608 54023010 -101607110 + LTRIS2 LTR ERV1 1 408 -156 4 997 1499 50 5 0 chr4 54023010 54023209 -101606911 - LTRIS2 LTR ERV1 0 564 365 5 997 8085 80 29 21 chr4 54023209 54024614 -101605506 - RLTR1B-int LTR ERV1 -1725 3338 1140 5 997 549 0 0 0 chr4 54024614 54024675 -101605445 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 997 8085 80 29 24 chr4 54024675 54024699 -101605421 - RLTR1B-int LTR ERV1 -2160 1139 1116 5 997 2064 243 85 15 chr4 54024704 54025505 -101604615 - MuRRS4-int LTR ERV1 -3447 1616 760 5 997 4909 128 26 14 chr4 54025496 54026256 -101603864 - RMER16-int LTR ERVK -3962 1444 676 5 997 279 218 295 0 chr4 54026241 54026319 -101603801 - RMER16-int LTR ERVK -5080 326 226 5 997 257 302 7 92 chr4 54026466 54026608 -101603512 - MuRRS4-int LTR ERV1 -4754 309 180 5 997 3859 62 92 13 chr4 54026952 54027474 -101602646 - LTRIS2 LTR ERV1 -1 563 1 5 997 1113 75 6 6 chr4 54027474 54027634 -101602486 + LTRIS2 LTR ERV1 405 564 0 5 997 2272 107 131 3 chr4 54028180 54028363 -101601757 + BGLII_Mus LTR ERVK 1 185 -237 5 997 522 0 0 0 chr4 54028363 54028421 -101601699 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 997 2272 107 131 3 chr4 54028421 54028611 -101601509 + BGLII_Mus LTR ERVK 186 421 -1 5 997 189 0 0 0 chr4 54028665 54028686 -101601434 + (T)n Simple_repeat Simple_repeat 1 21 0 5 997 429 305 37 32 chr4 54029837 54030054 -101600066 - MER106A DNA MER1_type -3 233 16 6 997 21 36 0 0 chr4 54030137 54030165 -101599955 + AT_rich Low_complexity Low_complexity 1 28 0 6 997 209 103 51 0 chr4 54030307 54030346 -101599774 + MIRc SINE MIR 114 154 -114 6 997 666 37 0 0 chr4 54030654 54030735 -101599385 + (GGGAGA)n Simple_repeat Simple_repeat 4 84 0 6 997 666 280 196 0 chr4 54031209 54031505 -101598615 + MTE2b LTR MaLR 6 359 -20 6 997 723 24 0 0 chr4 54031637 54031722 -101598398 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 997 239 328 16 8 chr4 54032384 54032510 -101597610 + CT-rich Low_complexity Low_complexity 1 127 0 6 997 396 40 0 0 chr4 54034863 54034913 -101595207 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 997 900 257 0 24 chr4 54035588 54035799 -101594321 - MTE2a LTR MaLR 0 379 174 6 997 214 143 48 0 chr4 54035799 54035841 -101594279 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 6 997 642 245 0 21 chr4 54035848 54035990 -101594130 - B1_Mur1 SINE Alu -9 140 2 7 997 2221 114 59 13 chr4 54036926 54037130 -101592990 - RMER17C LTR ERVK 0 410 191 7 997 1057 90 11 0 chr4 54037130 54037307 -101592813 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 997 2221 114 59 13 chr4 54037307 54037494 -101592626 - RMER17C LTR ERVK -220 190 2 7 997 180 158 0 0 chr4 54037665 54037703 -101592417 + (ATG)n Simple_repeat Simple_repeat 2 39 0 7 997 22 0 0 0 chr4 54037882 54037904 -101592216 + AT_rich Low_complexity Low_complexity 1 22 0 7 997 333 0 0 0 chr4 54037930 54037967 -101592153 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 997 669 203 94 0 chr4 54037969 54038107 -101592013 - B3 SINE B2 -64 152 2 7 997 217 68 45 0 chr4 54038800 54038844 -101591276 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 7 997 231 222 0 0 chr4 54039372 54039426 -101590694 + T-rich Low_complexity Low_complexity 1 54 0 7 997 232 222 19 0 chr4 54039862 54039916 -101590204 - PB1D9 SINE Alu -65 55 1 7 997 186 43 0 0 chr4 54040196 54040219 -101589901 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 997 384 22 0 0 chr4 54040905 54040950 -101589170 + (A)n Simple_repeat Simple_repeat 1 45 0 8 997 23 33 0 0 chr4 54040982 54041012 -101589108 + AT_rich Low_complexity Low_complexity 1 30 0 8 997 392 0 21 0 chr4 54041061 54041109 -101589011 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 997 309 26 0 0 chr4 54041109 54041147 -101588973 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 997 210 207 16 65 chr4 54041383 54041445 -101588675 - L2b LINE L2 -9 3366 3308 8 997 180 111 0 0 chr4 54041705 54041732 -101588388 + (T)n Simple_repeat Simple_repeat 1 27 0 8 997 525 68 0 0 chr4 54043098 54043172 -101586948 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 997 354 98 0 0 chr4 54043504 54043555 -101586565 + (A)n Simple_repeat Simple_repeat 1 51 0 8 997 391 316 124 27 chr4 54044501 54044758 -101585362 - MER31A LTR ERV1 0 485 204 8 997 555 90 0 0 chr4 54046650 54046728 -101583392 + (TC)n Simple_repeat Simple_repeat 1 78 0 9 997 450 53 0 0 chr4 54046898 54046955 -101583165 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 997 314 222 0 0 chr4 54047093 54047156 -101582964 + ID SINE ID 9 71 -153 9 997 180 0 0 0 chr4 54047320 54047340 -101582780 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 997 684 0 0 0 chr4 54047967 54048043 -101582077 + (CACAG)n Simple_repeat Simple_repeat 1 76 0 9 997 21 36 0 0 chr4 54048650 54048678 -101581442 + AT_rich Low_complexity Low_complexity 1 28 0 9 997 613 306 37 21 chr4 54049167 54049357 -101580763 - B4 SINE B4 0 292 100 9 997 275 277 46 73 chr4 54049822 54049931 -101580189 - PB1D7 SINE Alu -10 110 5 9 997 449 182 13 0 chr4 54050078 54050155 -101579965 + ID2 SINE ID 5 82 -1 9 997 567 331 90 40 chr4 54050587 54050864 -101579256 - B4A SINE B4 0 292 2 9 997 441 0 0 0 chr4 54051527 54051576 -101578544 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 997 674 296 22 62 chr4 54051670 54051692 -101578428 - Lx8 LINE L1 -46 7427 7410 1 997 857 105 19 7 chr4 54051692 54051846 -101578274 + (TTC)n Simple_repeat Simple_repeat 3 158 0 1 997 674 296 22 62 chr4 54051846 54052144 -101577976 - Lx8 LINE L1 -64 7409 7120 1 997 1079 129 0 6 chr4 54052937 54053116 -101577004 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 997 608 289 23 28 chr4 54054281 54054495 -101575625 - RLTR16 LTR ERVK -261 244 32 1 997 419 269 64 102 chr4 54055355 54055431 -101574689 + B4A SINE B4 1 84 -208 1 997 1467 33 0 0 chr4 54055431 54055674 -101574446 + (CAAAC)n Simple_repeat Simple_repeat 1 243 0 1 997 419 287 60 98 chr4 54055674 54055788 -101574332 + B4A SINE B4 84 184 -108 1 997 1227 54 0 0 chr4 54056519 54056666 -101573454 - B1_Mm SINE Alu 0 147 1 1 997 192 194 0 27 chr4 54059092 54059129 -101570991 - L2b LINE L2 -95 3280 3245 1 997 691 261 95 11 chr4 54059400 54059590 -101570530 - MTD LTR MaLR -196 223 18 1 997 1637 187 67 12 chr4 54059738 54059967 -101570153 + ORR1D1 LTR MaLR 1 228 -146 1 997 225 0 0 0 chr4 54059967 54059992 -101570128 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 1 997 1637 187 67 12 chr4 54059992 54060108 -101570012 + ORR1D1 LTR MaLR 229 364 -10 1 997 459 113 0 0 chr4 54060708 54060779 -101569341 + (CCCTAG)n Simple_repeat Simple_repeat 1 71 0 1 997 22 0 0 0 chr4 54061017 54061039 -101569081 + AT_rich Low_complexity Low_complexity 1 22 0 1 997 666 226 75 0 chr4 54061147 54061280 -101568840 + B1_Mur1 SINE Alu 1 143 -6 1 997 318 360 111 14 chr4 54062735 54062952 -101567168 + MLT1H LTR MaLR 50 287 -262 1 997 405 296 69 23 chr4 54063757 54063930 -101566190 + Charlie10 DNA MER1_type 65 245 -2577 1 997 1082 229 86 63 chr4 54064141 54064491 -101565629 + ORR1D2 LTR MaLR 5 362 -8 1 997 211 211 0 0 chr4 54064610 54064648 -101565472 - RSINE1 SINE B4 -47 118 81 1 997 1675 58 9 4 chr4 54065209 54065434 -101564686 - L1_Mus3 LINE L1 -2 6636 6411 1 997 538 202 8 40 chr4 54065480 54065604 -101564516 + RSINE1 SINE B4 11 130 -35 1 997 180 422 9 0 chr4 54066818 54066934 -101563186 - MIRc SINE MIR -24 244 128 1 997 858 296 26 30 chr4 54066946 54067217 -101562903 + B4A SINE B4 1 270 -22 1 997 315 0 0 0 chr4 54067295 54067330 -101562790 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 997 516 45 0 0 chr4 54067330 54067396 -101562724 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 997 915 310 80 14 chr4 54067470 54067820 -101562300 + MTEa LTR MaLR 3 375 -4 1 997 314 23 23 0 chr4 54067913 54067956 -101562164 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 1 997 246 276 187 0 chr4 54067980 54068103 -101562017 + LTR33 LTR ERVL 10 155 -360 1 997 246 62 0 0 chr4 54068473 54068505 -101561615 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 997 374 57 19 0 chr4 54068530 54068583 -101561537 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 997 215 325 12 24 chr4 54069362 54069444 -101560676 - L2 LINE L2 -575 2844 2764 1 997 2339 56 3 0 chr4 54070333 54070621 -101559499 - L1_Mus1 LINE L1 0 6567 6279 1 997 261 0 0 0 chr4 54071409 54071438 -101558682 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 997 682 309 11 0 chr4 54072263 54072441 -101557679 + ID_B1 SINE B4 3 182 -42 1 997 275 352 38 0 chr4 54072347 54072452 -101557668 + PB1D10 SINE Alu 7 115 -2 1 997 214 132 53 0 chr4 54072469 54072507 -101557613 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 1 997 467 228 0 0 chr4 54074024 54074116 -101556004 - PB1D10 SINE Alu 0 117 26 1 997 638 216 80 70 chr4 54076511 54076710 -101553410 + B3 SINE B2 3 203 -13 1 997 478 376 67 4 chr4 54077900 54078167 -101551953 + B4A SINE B4 3 286 -6 1 997 423 0 0 0 chr4 54078173 54078220 -101551900 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 997 660 188 103 10 chr4 54078221 54078415 -101551705 + Lx9 LINE L1 7431 7642 -2 1 997 1129 89 7 0 chr4 54078464 54078610 -101551510 + B1_Mus1 SINE Alu 2 148 0 1 997 47 19 0 0 chr4 54078685 54078739 -101551381 + AT_rich Low_complexity Low_complexity 1 54 0 1 997 494 248 29 21 chr4 54079130 54079270 -101550850 - MLT1A0 LTR MaLR 0 365 225 1 997 388 346 6 32 chr4 54079290 54079448 -101550672 - MLT1A0 LTR MaLR -207 158 5 1 997 264 205 44 13 chr4 54079720 54079795 -101550325 + L1MA5A LINE L1 6207 6296 -1 1 997 321 26 0 0 chr4 54080859 54080897 -101549223 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 997 432 0 0 0 chr4 54080897 54080944 -101549176 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 997 549 0 0 0 chr4 54080944 54081004 -101549116 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 997 3927 189 53 68 chr4 54081132 54082048 -101548072 - RMER13B LTR ERVK -1 907 5 1 997 369 0 0 0 chr4 54082064 54082105 -101548015 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 997 2637 180 89 19 chr4 54082631 54083204 -101546916 - RMER20B LTR ERVK -9 618 6 1 997 201 39 0 0 chr4 54084081 54084107 -101546013 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 997 776 131 6 0 chr4 54085120 54085295 -101544825 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 997 804 79 0 0 chr4 54085295 54085421 -101544699 + (GA)n Simple_repeat Simple_repeat 1 126 0 1 997 297 0 0 0 chr4 54085816 54085849 -101544271 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 997 1893 178 82 70 chr4 54086965 54087406 -101542714 - RLTR41 LTR ERV1 0 446 1 1 997 874 211 173 19 chr4 54089003 54089313 -101540807 - ORR1C2 LTR MaLR 0 394 9 1 997 948 128 13 33 chr4 54089436 54089589 -101540531 - B1_Mur4 SINE Alu 0 150 1 1 997 1100 268 70 14 chr4 54089862 54090221 -101539899 + MTEb LTR MaLR 1 379 0 1 997 1858 140 18 15 chr4 54092368 54092708 -101537412 + RLTR15 LTR ERVK 1 341 -18 1 997 214 333 20 40 chr4 54094908 54095008 -101535112 + MIRc SINE MIR 12 109 -159 1 997 369 109 0 0 chr4 54095119 54095174 -101534946 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 997 291 323 0 21 chr4 54095326 54095421 -101534699 - RSINE1 SINE B4 -70 95 3 1 997 221 350 0 0 chr4 54095421 54095481 -101534639 + polypyrimidine Low_complexity Low_complexity 5 64 0 1 997 256 329 0 0 chr4 54095487 54095557 -101534563 - ID4_ SINE ID -13 70 1 1 997 825 339 35 15 chr4 54095972 54096433 -101533687 + L1MA4 LINE L1 5492 5961 -339 1 997 738 211 0 0 chr4 54096464 54096644 -101533476 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 997 444 143 0 0 chr4 54096662 54096746 -101533374 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 997 389 346 57 96 chr4 54096986 54097438 -101532682 - MLT1E1A LTR MaLR -55 625 74 1 997 216 290 217 66 chr4 54099049 54099215 -101530905 + B3A SINE B2 1 191 -7 1 997 294 267 90 16 chr4 54099380 54099502 -101530618 - B1F2 SINE Alu -2 147 17 1 997 2146 126 3 50 chr4 54100681 54101024 -101529096 - ORR1A2 LTR MaLR 0 327 1 1 997 289 367 29 25 chr4 54101260 54101464 -101528656 + MERVL_2A-int LTR ERVL 2247 2451 -3310 1 997 251 242 113 32 chr4 54102008 54102132 -101527988 + Lx8 LINE L1 7310 7443 -30 1 997 419 313 83 12 chr4 54102332 54102500 -101527620 + B3A SINE B2 2 181 -17 1 997 234 0 0 0 chr4 54103153 54103179 -101526941 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 1 997 442 281 38 30 chr4 54103305 54103437 -101526683 + MER45A DNA Tip100 46 178 0 1 997 297 0 0 0 chr4 54103757 54103790 -101526330 + (T)n Simple_repeat Simple_repeat 1 33 0 1 997 480 256 119 8 chr4 54104387 54104513 -101525607 - B1_Mur2 SINE Alu -5 144 5 1 997 183 392 33 47 chr4 54105084 54105234 -101524886 - L2b LINE L2 -4 3371 3224 1 997 253 247 77 13 chr4 54106185 54106263 -101523857 + LTR16C LTR ERVL 405 487 -2 1 997 269 89 22 0 chr4 54106636 54106681 -101523439 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 997 232 315 132 53 chr4 54106729 54106880 -101523240 - MIRc SINE MIR -103 165 3 1 997 221 297 33 0 chr4 54107126 54107217 -101522903 - MIRc SINE MIR 0 268 175 1 997 196 374 28 9 chr4 54107462 54107570 -101522550 - MIRc SINE MIR -112 156 47 1 997 286 175 25 0 chr4 54107951 54108031 -101522089 + GA-rich Low_complexity Low_complexity 2 83 0 1 997 207 231 58 0 chr4 54108042 54108094 -101522026 + GA-rich Low_complexity Low_complexity 4 58 0 1 997 300 154 0 0 chr4 54108505 54108557 -101521563 + GA-rich Low_complexity Low_complexity 2 53 0 1 997 288 223 51 127 chr4 54108857 54108975 -101521145 + L4 LINE RTE 1794 1902 -127 1 997 497 213 0 77 chr4 54112220 54112337 -101517783 + B1F2 SINE Alu 42 149 0 1 997 420 117 0 0 chr4 54113145 54113222 -101516898 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 1 997 650 302 45 41 chr4 54113235 54113525 -101516595 - B4A SINE B4 0 292 2 1 997 22 0 0 0 chr4 54113528 54113550 -101516570 + AT_rich Low_complexity Low_complexity 1 22 0 1 997 868 263 36 28 chr4 54113616 54113866 -101516254 - B4 SINE B4 0 292 41 1 997 443 175 0 14 chr4 54114075 54114220 -101515900 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 1 997 286 323 0 0 chr4 54114241 54114306 -101515814 + RSINE1 SINE B4 7 71 -94 1 997 410 252 8 50 chr4 54114320 54114445 -101515675 - Lx8 LINE L1 -451 7022 6911 1 997 1277 249 21 47 chr4 54114516 54114946 -101515174 - L1_Mur3 LINE L1 -593 5287 4869 1 997 236 326 77 67 chr4 54115078 54115272 -101514848 + MLT1A1 LTR MaLR 3 198 -210 1 997 333 268 20 40 chr4 54115340 54115441 -101514679 + MLT1A1 LTR MaLR 310 408 0 1 997 380 289 69 14 chr4 54115908 54116052 -101514068 + MLT1B LTR MaLR 223 374 -16 1 997 325 353 57 14 chr4 54116496 54116706 -101513414 - HAL1 LINE L1 -2198 309 91 1 997 210 349 199 39 chr4 54116839 54117045 -101513075 + MIRb SINE MIR 24 262 -6 1 997 252 0 0 0 chr4 54118236 54118264 -101511856 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 997 297 0 0 0 chr4 54118264 54118296 -101511824 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 997 228 293 13 13 chr4 54118300 54118376 -101511744 + CT-rich Low_complexity Low_complexity 3 78 0 2 997 243 125 0 0 chr4 54118380 54118420 -101511700 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 2 997 324 284 34 25 chr4 54118748 54118867 -101511253 - LFSINE_Vert SINE SINE -302 157 38 2 997 666 25 0 0 chr4 54119083 54119163 -101510957 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 2 997 803 140 7 0 chr4 54120659 54120802 -101509318 + (TTCC)n Simple_repeat Simple_repeat 2 145 0 2 997 1147 62 0 14 chr4 54121243 54121391 -101508729 - B1_Mm SINE Alu 0 147 2 2 997 214 359 65 19 chr4 54121831 54121939 -101508181 - MIR SINE MIR -134 128 16 2 997 555 16 0 0 chr4 54122181 54122245 -101507875 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 997 273 383 8 35 chr4 54122337 54122594 -101507526 - L2 LINE L2 -609 2810 2561 2 997 517 156 28 0 chr4 54122704 54122813 -101507307 + CT-rich Low_complexity Low_complexity 3 114 0 2 997 419 360 67 5 chr4 54124059 54124433 -101505687 - Lx8 LINE L1 -10 7463 7067 2 997 339 387 26 21 chr4 54124436 54124626 -101505494 + MIR SINE MIR 58 248 -14 2 997 22 35 0 0 chr4 54125397 54125426 -101504694 + AT_rich Low_complexity Low_complexity 1 29 0 2 997 234 0 0 0 chr4 54125435 54125461 -101504659 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 997 842 216 83 36 chr4 54126067 54126259 -101503861 - B3 SINE B2 -9 207 7 2 997 431 326 107 41 chr4 54126730 54127021 -101503099 + L2a LINE L2 3117 3426 0 2 997 681 161 0 0 chr4 54127108 54127238 -101502882 + T-rich Low_complexity Low_complexity 3 132 0 2 997 1218 100 0 0 chr4 54127259 54127439 -101502681 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 997 245 93 0 69 chr4 54127532 54127590 -101502530 - L1MD3 LINE L1 -1 7994 7941 2 997 1121 302 43 34 chr4 54127625 54128246 -101501874 - L1MA10 LINE L1 -15 6319 5693 2 997 347 102 17 0 chr4 54128393 54128404 -101501716 + (GAAAA)n Simple_repeat Simple_repeat 4 14 0 2 997 1253 95 0 10 chr4 54128404 54128643 -101501477 + L1_Mus4 LINE L1 6446 6636 0 2 997 339 85 0 0 chr4 54129311 54129358 -101500762 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 997 320 178 0 14 chr4 54130096 54130170 -101499950 + GA-rich Low_complexity Low_complexity 4 76 0 2 997 450 0 0 0 chr4 54130230 54130280 -101499840 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 997 572 277 0 41 chr4 54130898 54130918 -101499202 - RSINE1 SINE B4 -24 141 126 2 997 189 107 0 0 chr4 54130918 54130946 -101499174 + (TATG)n Simple_repeat Simple_repeat 3 30 0 2 997 572 277 0 41 chr4 54130946 54131072 -101499048 - RSINE1 SINE B4 -40 125 1 2 997 404 314 24 35 chr4 54131076 54131271 -101498849 - MIRc SINE MIR -28 240 44 2 997 330 353 13 25 chr4 54132341 54132498 -101497622 - MIR SINE MIR -62 200 46 2 997 21 36 0 0 chr4 54132581 54132609 -101497511 + AT_rich Low_complexity Low_complexity 1 28 0 2 998 626 254 24 8 chr4 54133359 54133486 -101496634 + B1F1 SINE Alu 7 135 -14 2 998 1408 254 58 12 chr4 54133642 54133985 -101496135 + MTE2b LTR MaLR 1 359 -20 2 998 221 308 79 49 chr4 54134776 54134940 -101495180 - L2a LINE L2 -2 3424 3256 2 998 182 322 33 17 chr4 54135158 54135218 -101494902 - L2b LINE L2 -5 3370 3310 2 998 504 298 62 85 chr4 54136112 54136453 -101493667 - MER46C DNA MER2_type -5 333 1 2 998 278 316 0 39 chr4 54136551 54136653 -101493467 + MER5A DNA MER1_type 89 186 -3 2 998 1598 191 46 35 chr4 54136797 54137167 -101492953 - ORR1D1 LTR MaLR 0 374 1 2 998 302 172 58 66 chr4 54138122 54138259 -101491861 - MER63D DNA AcHobo -60 1001 866 2 998 750 221 103 16 chr4 54138267 54138451 -101491669 - B3 SINE B2 -13 203 4 2 998 269 303 79 0 chr4 54138559 54138648 -101491472 + MER58B DNA MER1_type 222 317 -24 2 998 1083 285 47 6 chr4 54138811 54139153 -101490967 - MER63D DNA AcHobo -653 408 53 2 998 235 364 16 118 chr4 54139892 54140079 -101490041 - LTR78 LTR ERV1 -273 1031 864 2 998 1463 169 80 55 chr4 54140803 54141223 -101488897 - RMER17C LTR ERVK -519 439 16 2 998 231 114 0 0 chr4 54142072 54142107 -101488013 + (T)n Simple_repeat Simple_repeat 1 35 0 2 998 315 234 147 49 chr4 54142168 54142352 -101487768 - L1M5 LINE L1 -371 5823 5622 2 998 719 291 39 65 chr4 54142996 54143412 -101486708 - MLT1A1 LTR MaLR 0 408 4 2 998 585 143 36 29 chr4 54143974 54144111 -101486009 - Lx7 LINE L1 0 7696 7559 2 998 458 211 0 95 chr4 54144115 54144262 -101485858 + BC1_Mm scRNA scRNA 4 136 -16 2 998 387 0 0 0 chr4 54144280 54144323 -101485797 + (ATATG)n Simple_repeat Simple_repeat 3 45 0 2 998 6172 211 57 46 chr4 54144406 54145762 -101484358 - Lx7 LINE L1 -406 7290 5879 2 998 3254 46 5 2 chr4 54145762 54146157 -101483963 - MTA_Mm LTR MaLR 0 396 1 2 998 13774 162 49 42 chr4 54146157 54146353 -101483767 - Lx7 LINE L1 -4 5876 5705 2 998 4536 8 0 0 chr4 54146353 54146851 -101483269 - L1Md_T LINE L1 -12 6570 6073 2 998 13774 162 49 42 chr4 54146851 54148447 -101481673 - Lx7 LINE L1 -176 5704 4117 2 998 180 0 0 0 chr4 54148447 54148467 -101481653 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 998 13774 162 49 42 chr4 54148467 54148940 -101481180 - Lx7 LINE L1 -1764 4116 3670 2 998 964 112 130 0 chr4 54148940 54149101 -101481019 - B2_Mm2 SINE B2 -13 182 1 2 998 13774 162 49 42 chr4 54149101 54149919 -101480201 - Lx7 LINE L1 -2211 3669 2771 2 998 1716 219 122 14 chr4 54149913 54150272 -101479848 - Lx7 LINE L1 -7128 600 206 2 998 216 0 0 0 chr4 54150272 54150296 -101479824 + (CAGTC)n Simple_repeat Simple_repeat 1 24 0 2 998 1716 219 122 14 chr4 54150296 54150428 -101479692 - Lx7 LINE L1 -7523 205 57 2 998 705 221 78 25 chr4 54150716 54150901 -101479219 - B3 SINE B2 -9 189 13 2 998 1086 140 0 0 chr4 54150925 54151104 -101479016 + (TTTTC)n Simple_repeat Simple_repeat 1 179 0 2 998 645 49 0 0 chr4 54151105 54151186 -101478934 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 2 998 404 340 55 37 chr4 54151319 54151536 -101478584 + MIR SINE MIR 18 238 -24 2 998 803 296 102 33 chr4 54151785 54152148 -101477972 - MTD LTR MaLR -14 405 18 2 998 26 0 0 0 chr4 54152304 54152330 -101477790 + AT_rich Low_complexity Low_complexity 1 26 0 2 998 1105 82 0 0 chr4 54152653 54152800 -101477320 - B1_Mus2 SINE Alu 0 147 1 2 998 558 0 0 0 chr4 54153344 54153406 -101476714 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 998 360 0 0 0 chr4 54153406 54153445 -101476675 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 998 261 269 57 32 chr4 54154736 54154859 -101475261 + MER112 DNA MER1_type 108 233 -28 2 998 329 312 83 91 chr4 54155102 54155356 -101474764 + ORR1E LTR MaLR 104 355 -4 2 998 387 255 5 24 chr4 54155415 54155549 -101474571 - PB1D7 SINE Alu 0 120 1 2 998 33390 70 10 15 chr4 54155965 54161996 -101468124 - L1Md_F2 LINE L1 -3 6579 575 2 998 39515 5 0 0 chr4 54162341 54168709 -101461411 - L1Md_A LINE L1 0 6582 214 2 998 268 348 80 69 chr4 54170802 54171179 -101458941 + L2 LINE L2 2158 2538 -881 2 998 428 259 8 8 chr4 54171662 54171779 -101458341 - BC1_Mm scRNA scRNA -35 117 1 2 998 538 330 195 37 chr4 54172168 54172656 -101457464 + MLT1F1 LTR MaLR 5 569 0 2 998 183 296 0 0 chr4 54173743 54173787 -101456333 - L2a LINE L2 -10 3416 3373 2 998 744 71 0 0 chr4 54173988 54174087 -101456033 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 2 998 210 232 220 10 chr4 54174899 54174999 -101455121 + L3b LINE CR1 1 121 -361 2 998 795 21 0 0 chr4 54177168 54177261 -101452859 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 998 252 0 0 0 chr4 54177926 54177954 -101452166 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 998 417 66 0 0 chr4 54179210 54179271 -101450849 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 998 877 181 0 6 chr4 54179375 54179731 -101450389 + CT-rich Low_complexity Low_complexity 1 354 0 2 998 358 318 435 0 chr4 54180220 54180420 -101449700 + B4A SINE B4 2 288 -4 2 998 540 30 0 0 chr4 54180454 54180520 -101449600 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 998 471 18 0 0 chr4 54181407 54181463 -101448657 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 998 769 193 6 17 chr4 54181791 54181965 -101448155 - Lx9 LINE L1 0 7644 7473 2 998 3119 30 8 0 chr4 54181969 54182335 -101447785 - L1_Mus1 LINE L1 -594 5973 5605 2 998 4848 70 3 2 chr4 54182335 54182922 -101447198 + L1_Mus1 LINE L1 5980 6567 0 2 998 472 288 55 24 chr4 54183761 54183925 -101446195 + MIRc SINE MIR 48 216 -52 2 998 378 0 0 0 chr4 54183960 54184002 -101446118 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 998 487 271 48 35 chr4 54184007 54184152 -101445968 - RSINE1 SINE B4 -16 149 3 2 998 1153 96 0 11 chr4 54184357 54184537 -101445583 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 998 772 323 72 13 chr4 54184627 54184862 -101445258 - B4 SINE B4 -2 290 42 2 998 273 119 0 0 chr4 54185101 54185143 -101444977 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 998 846 224 0 20 chr4 54185829 54185979 -101444141 + B1_Mur1 SINE Alu 2 148 -1 2 998 182 300 96 39 chr4 54186240 54186344 -101443776 - L2 LINE L2 -2828 591 482 2 998 467 353 129 39 chr4 54186702 54186988 -101443132 - LTR16E1 LTR ERVL -23 515 204 2 998 302 346 47 54 chr4 54187333 54187611 -101442509 + L2a LINE L2 2339 2614 -805 2 998 425 268 43 35 chr4 54187799 54187915 -101442205 + MER21B LTR ERV1 38 154 -709 2 998 3130 73 26 5 chr4 54187930 54188318 -101441802 - MTA_Mm LTR MaLR 0 396 1 2 998 7265 76 15 72 chr4 54188318 54189468 -101440652 - MTA_Mm-int LTR MaLR 0 1098 15 2 998 1339 312 85 92 chr4 54189446 54189608 -101440512 + MER21B LTR ERV1 154 321 -542 2 998 280 300 14 0 chr4 54189608 54189678 -101440442 + ID4 SINE ID 4 74 -9 2 998 1339 312 85 92 chr4 54189678 54190126 -101439994 + MER21B LTR ERV1 322 760 -103 2 998 1110 309 37 48 chr4 54190306 54190660 -101439460 + MTEa LTR MaLR 30 379 0 2 998 916 147 68 0 chr4 54190665 54190828 -101439292 + ORR1D1 LTR MaLR 2 175 -199 2 998 7821 141 20 5 chr4 54190833 54192151 -101437969 - ORR1A4-int LTR MaLR -626 1337 1 2 998 1770 120 103 3 chr4 54192155 54192447 -101437673 - ORR1A4 LTR MaLR -8 321 1 2 998 620 228 81 0 chr4 54192447 54192589 -101437531 + ORR1D1 LTR MaLR 231 384 0 2 998 318 347 88 18 chr4 54192952 54193169 -101436951 + L2a LINE L2 3083 3314 -112 2 998 7648 68 14 2 chr4 54193201 54194516 -101435604 - L1Md_F2 LINE L1 -2 6580 5250 2 998 3679 172 80 15 chr4 54196063 54196737 -101433383 - RMER6D LTR ERVK 0 720 3 3 998 946 191 96 110 chr4 54197284 54197685 -101432435 + MT2B LTR ERVL 6 527 -74 3 998 1375 150 0 22 chr4 54197685 54197910 -101432210 - URR1A DNA MER1_type 0 226 7 3 998 239 133 22 0 chr4 54197942 54197987 -101432133 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 998 585 244 15 30 chr4 54199659 54199790 -101430330 + B3A SINE B2 40 168 -30 3 998 28 48 0 0 chr4 54199802 54199844 -101430276 + AT_rich Low_complexity Low_complexity 1 42 0 3 998 878 308 21 4 chr4 54200221 54200501 -101429619 - B4A SINE B4 -5 287 3 3 998 305 377 19 19 chr4 54200555 54200717 -101429403 + MLT1F2 LTR MaLR 6 167 -393 3 998 2148 234 82 21 chr4 54201709 54202390 -101427730 + L1MC4a LINE L1 7001 7723 -159 3 998 651 324 55 78 chr4 54202390 54202738 -101427382 - MER2 DNA MER2_type 0 345 6 3 998 228 325 78 39 chr4 54202859 54202987 -101427133 - MIRm SINE MIR -122 154 22 3 998 3727 216 44 52 chr4 54203277 54203610 -101426510 + Lx2B LINE L1 6018 6338 -662 3 998 7748 26 22 1 chr4 54203610 54204468 -101425652 + L1Md_F2 LINE L1 5707 6582 0 3 998 3727 216 44 52 chr4 54204468 54205124 -101424996 + Lx2B LINE L1 6339 7000 0 3 998 752 258 0 30 chr4 54205475 54205643 -101424477 - RSINE1 SINE B4 0 165 3 3 998 218 343 65 56 chr4 54208466 54208821 -101421299 - L4 LINE RTE -24 2005 1648 3 998 242 242 77 48 chr4 54209245 54209349 -101420771 - LTR16C LTR ERVL -46 492 386 3 998 305 264 107 15 chr4 54209916 54210017 -101420103 + MIR SINE MIR 1 109 -159 3 998 204 288 15 0 chr4 54210193 54210259 -101419861 + CT-rich Low_complexity Low_complexity 3 69 0 3 998 370 385 43 14 chr4 54210649 54210857 -101419263 - LTR16C LTR ERVL -118 371 158 3 998 941 307 74 52 chr4 54211233 54211679 -101418441 + MLT1C LTR MaLR 3 458 -9 3 998 519 226 343 31 chr4 54212684 54212788 -101417332 + MTE2a LTR MaLR 1 132 -247 3 998 2320 168 8 8 chr4 54212788 54213155 -101416965 + ORR1B2 LTR MaLR 1 367 0 3 998 519 312 101 57 chr4 54213155 54213386 -101416734 + MTE2a LTR MaLR 133 379 0 3 998 238 339 83 17 chr4 54213787 54213907 -101416213 - MER5A1 DNA MER1_type -38 128 1 3 998 311 320 0 0 chr4 54213958 54214033 -101416087 - ID4 SINE ID -2 81 7 3 998 985 213 69 5 chr4 54214464 54214667 -101415453 + B3 SINE B2 1 216 0 3 998 410 278 71 33 chr4 54215521 54215703 -101414417 - MER121 Unknown Unknown -88 324 136 3 998 24 67 0 0 chr4 54216692 54216737 -101413383 + AT_rich Low_complexity Low_complexity 1 45 0 3 998 468 349 23 37 chr4 54217353 54217570 -101412550 - MamRep488 DNA hAT -3 216 3 3 998 225 0 0 0 chr4 54217990 54218015 -101412105 + (T)n Simple_repeat Simple_repeat 1 25 0 3 998 21 0 0 0 chr4 54218154 54218175 -101411945 + AT_rich Low_complexity Low_complexity 1 21 0 3 998 531 0 0 0 chr4 54220051 54220110 -101410010 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 998 445 355 8 0 chr4 54221608 54221729 -101408391 + RSINE1 SINE B4 11 132 -33 3 998 212 390 27 64 chr4 54222136 54222355 -101407765 - L4 LINE RTE -701 1328 1118 3 998 229 348 75 61 chr4 54223170 54223317 -101406803 + MIR SINE MIR 34 182 -80 3 998 21 0 0 0 chr4 54223406 54223427 -101406693 + AT_rich Low_complexity Low_complexity 1 21 0 3 998 906 234 34 5 chr4 54223801 54224007 -101406113 - B3 SINE B2 -4 212 1 3 998 225 322 41 18 chr4 54224076 54224182 -101405938 + MIRc SINE MIR 6 118 -150 3 998 402 83 42 0 chr4 54224599 54224671 -101405449 + (TTA)n Simple_repeat Simple_repeat 2 76 0 3 998 710 284 34 49 chr4 54224672 54224876 -101405244 - ID_B1 SINE B4 -21 203 3 3 998 180 306 50 107 chr4 54224904 54225025 -101405095 - MIRc SINE MIR -111 157 44 3 998 348 209 0 0 chr4 54225454 54225540 -101404580 + CT-rich Low_complexity Low_complexity 1 86 0 3 998 241 332 60 51 chr4 54225725 54225941 -101404179 + L2 LINE L2 2608 2825 -594 3 998 252 352 8 8 chr4 54226321 54226379 -101403741 + polypyrimidine Low_complexity Low_complexity 69 125 0 3 998 1625 148 192 12 chr4 54226379 54226713 -101403407 - ORR1B1 LTR MaLR 0 394 1 3 998 252 352 8 8 chr4 54226713 54226777 -101403343 + polypyrimidine Low_complexity Low_complexity 4 68 0 3 998 506 345 51 35 chr4 54226797 54227163 -101402957 - ORR1E LTR MaLR 0 370 1 3 998 719 345 31 28 chr4 54227249 54227535 -101402585 - RMER15 LTR ERVL -14 561 275 3 998 38427 18 1 6 chr4 54227543 54233925 -101396195 - L1Md_A LINE L1 -1 6581 234 3 998 354 262 179 24 chr4 54234370 54234538 -101395582 - L2a LINE L2 -9 3417 3224 3 998 3285 28 43 0 chr4 54234713 54235107 -101395013 + RLTR10A LTR ERVK 1 411 0 3 998 718 211 189 0 chr4 54235724 54235914 -101394206 - URR1A DNA MER1_type 0 226 1 3 998 1354 252 77 34 chr4 54236482 54236831 -101393289 + ORR1D2 LTR MaLR 1 364 -6 3 998 402 321 75 103 chr4 54236833 54237329 -101392791 - L2a LINE L2 -1031 2388 1907 3 998 792 0 0 0 chr4 54237391 54237479 -101392641 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 998 23 0 0 0 chr4 54237865 54237888 -101392232 + AT_rich Low_complexity Low_complexity 1 23 0 3 998 819 315 5 0 chr4 54237892 54238089 -101392031 - B3A SINE B2 0 198 1 3 998 231 79 0 0 chr4 54238228 54238266 -101391854 + L1_Mus2 LINE L1 6451 6488 -78 3 998 1112 287 7 12 chr4 54238784 54239203 -101390917 + L1_Rod LINE L1 5431 5847 0 3 998 417 115 0 0 chr4 54239232 54239310 -101390810 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 998 445 294 149 47 chr4 54239756 54240126 -101389994 + MLT1D LTR MaLR 1 387 -118 3 998 4727 93 34 20 chr4 54240136 54240835 -101389285 - Lx LINE L1 -3 6651 5943 3 998 1723 78 4 0 chr4 54240836 54241079 -101389041 + Lx LINE L1 5686 5929 -725 3 998 1133 29 7 0 chr4 54241793 54241933 -101388187 + B1_Mus2 SINE Alu 7 147 0 3 998 232 148 9 56 chr4 54241933 54242040 -101388080 + A-rich Low_complexity Low_complexity 6 107 0 3 998 254 323 79 0 chr4 54242341 54242468 -101387652 + L1MC4 LINE L1 1242 1378 -4837 3 998 229 283 54 74 chr4 54242638 54242787 -101387333 + Tigger14a DNA MER2_type 37 182 -142 3 998 288 0 0 0 chr4 54243016 54243048 -101387072 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 998 2329 318 42 18 chr4 54243136 54244147 -101385973 + Lx9 LINE L1 6431 7465 -179 3 998 660 48 0 0 chr4 54244154 54244238 -101385882 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 3 998 285 275 163 33 chr4 54244393 54244577 -101385543 - L2 LINE L2 -561 2858 2651 3 998 216 388 35 0 chr4 54244882 54244998 -101385122 - MIRc SINE MIR -34 234 115 3 998 405 347 39 35 chr4 54245486 54245746 -101384374 + L2 LINE L2 2651 2911 -508 3 998 215 315 21 52 chr4 54245761 54245858 -101384262 - L2c LINE L2 -52 3335 3242 3 998 1530 0 0 0 chr4 54248261 54248431 -101381689 + (TTCCC)n Simple_repeat Simple_repeat 1 170 0 3 998 313 147 13 26 chr4 54248437 54248514 -101381606 + CT-rich Low_complexity Low_complexity 2 77 0 3 998 216 0 0 0 chr4 54248778 54248802 -101381318 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 998 2782 268 31 68 chr4 54248844 54249716 -101380404 - Lx6 LINE L1 -4 7456 6617 3 998 346 182 110 29 chr4 54249721 54249857 -101380263 - Lx7 LINE L1 -151 7545 7399 3 998 3687 213 36 31 chr4 54249854 54250716 -101379404 - Lx6 LINE L1 -853 6607 5742 3 998 26 30 0 0 chr4 54250721 54250754 -101379366 + AT_rich Low_complexity Low_complexity 1 33 0 3 998 328 181 35 29 chr4 54250760 54250931 -101379189 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 998 8168 159 52 80 chr4 54250954 54252106 -101378014 - Lx6 LINE L1 -150 5730 4634 3 998 2922 55 39 3 chr4 54252106 54252315 -101377805 - MTB LTR MaLR 0 400 193 3 998 1281 80 0 0 chr4 54252315 54252490 -101377630 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 3 998 2922 55 39 3 chr4 54252490 54252666 -101377454 - MTB LTR MaLR -208 192 2 3 998 8168 159 52 80 chr4 54252666 54253475 -101376645 - Lx6 LINE L1 -1247 4633 3824 3 998 1602 202 61 78 chr4 54253482 54253842 -101376278 + ORR1B1 LTR MaLR 41 394 0 3 998 9057 166 47 101 chr4 54253842 54254031 -101376089 + ORR1B1-int LTR MaLR 1 156 -1807 3 998 3923 46 0 4 chr4 54254031 54254507 -101375613 - L1Md_F2 LINE L1 -3 6579 6106 3 998 9057 166 47 101 chr4 54254507 54256392 -101373728 + ORR1B1-int LTR MaLR 157 1963 0 3 998 323 148 0 36 chr4 54256392 54256448 -101373672 + ORR1B1 LTR MaLR 1 54 -275 3 998 36010 14 1 7 chr4 54256448 54261820 -101368300 + L1Md_A LINE L1 232 5568 -315 3 998 1741 185 0 94 chr4 54261820 54261838 -101368282 + ORR1B1 LTR MaLR 58 75 -319 3 998 8623 22 1 0 chr4 54261838 54262833 -101367287 + L1Md_A LINE L1 5587 6582 0 3 998 1741 185 0 94 chr4 54262833 54263177 -101366943 + ORR1B1 LTR MaLR 76 385 -9 3 998 408 52 17 0 chr4 54263187 54263245 -101366875 - L1_Mur3 LINE L1 -2304 3576 3518 3 998 416 184 0 0 chr4 54263249 54263325 -101366795 - Lx6 LINE L1 -3425 2455 2380 3 998 493 168 0 2 chr4 54263326 54263417 -101366703 - ORR1C1 LTR MaLR 0 378 286 3 998 641 317 82 32 chr4 54263444 54263802 -101366318 - L1MC4 LINE L1 -1493 4721 4335 3 124 291 28 0 0 chr4 54263802 54263838 -101366282 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 999 641 317 82 32 chr4 54263838 54264138 -101365982 - L1MC4 LINE L1 -1880 4334 4031 3 999 1431 260 31 11 chr4 54264215 54264565 -101365555 - MTE2b LTR MaLR -22 357 1 3 999 957 282 129 31 chr4 54264565 54265385 -101364735 + L1MA6 LINE L1 4508 5423 -877 3 999 1063 119 6 12 chr4 54265388 54265550 -101364570 + ORR1A3 LTR MaLR 1 161 -165 3 999 248 160 80 0 chr4 54265550 54265600 -101364520 + L1MA6 LINE L1 5869 5922 -390 3 999 470 191 0 22 chr4 54265620 54265711 -101364409 + B3 SINE B2 2 90 -126 3 999 477 0 0 0 chr4 54265718 54265771 -101364349 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 999 436 245 68 0 chr4 54265825 54265972 -101364148 + L1MA6 LINE L1 5960 6116 -184 3 999 321 155 0 0 chr4 54266041 54266099 -101364021 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 999 768 218 28 22 chr4 54266340 54266518 -101363602 - B3A SINE B2 -16 182 4 3 999 779 168 0 8 chr4 54266941 54267073 -101363047 - B1_Mur3 SINE Alu -2 147 17 3 999 292 231 40 136 chr4 54266975 54267100 -101363020 - MT2B LTR ERVL -337 264 152 3 999 414 0 0 0 chr4 54267100 54267146 -101362974 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 999 797 288 32 62 chr4 54267163 54267427 -101362693 - B4 SINE B4 -11 281 11 3 999 307 240 107 0 chr4 54268046 54268167 -101361953 - L1MC4 LINE L1 -4830 1385 1252 3 999 218 32 0 31 chr4 54268411 54268443 -101361677 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 999 399 310 8 8 chr4 54268589 54268719 -101361401 + CT-rich Low_complexity Low_complexity 5 134 0 3 999 1141 96 11 6 chr4 54269360 54269538 -101360582 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 999 1011 161 0 0 chr4 54269556 54269736 -101360384 + CT-rich Low_complexity Low_complexity 1 180 0 4 999 558 0 0 0 chr4 54269737 54269799 -101360321 + (TTTC)n Simple_repeat Simple_repeat 4 65 0 4 999 328 315 108 0 chr4 54269808 54269919 -101360201 - PB1D10 SINE Alu -26 123 1 4 999 300 283 19 2 chr4 54270622 54270718 -101359402 + Lx9 LINE L1 7245 7334 -310 4 999 333 0 0 0 chr4 54270718 54270755 -101359365 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 999 276 313 112 22 chr4 54270755 54270792 -101359328 + Lx9 LINE L1 7213 7261 -212 4 999 562 213 8 0 chr4 54272398 54272520 -101357600 - L1M2 LINE L1 -678 5613 5491 4 999 444 37 0 0 chr4 54272524 54272578 -101357542 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 999 4916 184 60 29 chr4 54272578 54273680 -101356440 - Lx5 LINE L1 -19 7031 5896 4 999 2959 192 82 14 chr4 54273877 54274547 -101355573 - RMER1B Other Other -9 1057 353 4 999 265 272 141 53 chr4 54274569 54274910 -101355210 + L1MA9 LINE L1 5829 6199 -113 4 999 21 0 0 0 chr4 54274946 54274967 -101355153 + AT_rich Low_complexity Low_complexity 1 21 0 4 999 185 257 42 14 chr4 54275016 54275087 -101355033 + MIR SINE MIR 183 255 -7 4 999 421 236 18 157 chr4 54275454 54275505 -101354615 - B1F SINE Alu -6 143 4 4 999 443 330 0 0 chr4 54275505 54275617 -101354503 - ID_B1 SINE B4 -28 196 85 4 999 268 338 35 28 chr4 54276644 54276787 -101353333 + MLT1N2 LTR MaLR 403 546 -16 4 999 204 200 0 0 chr4 54277238 54277283 -101352837 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 999 4445 52 0 0 chr4 54277432 54278003 -101352117 - L1_Mm LINE L1 -92 5791 5221 4 999 739 53 26 26 chr4 54278003 54278119 -101352001 + L1Md_F3 LINE L1 6468 6583 -1 4 999 739 278 170 35 chr4 54279921 54280238 -101349882 + MLT1A0 LTR MaLR 6 365 0 4 999 1246 234 35 10 chr4 54280604 54280893 -101349227 + Lx7 LINE L1 6406 6701 -995 4 999 3941 203 62 25 chr4 54281047 54281836 -101348284 + Lx7 LINE L1 6706 7523 -173 4 999 180 0 0 0 chr4 54281836 54281856 -101348264 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 999 3941 203 62 25 chr4 54281856 54282022 -101348098 + Lx7 LINE L1 7524 7696 0 4 999 228 135 0 0 chr4 54282663 54282700 -101347420 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 4 999 426 360 42 62 chr4 54282818 54283058 -101347062 + MLT1J LTR MaLR 173 407 -105 4 999 27565 127 7 3 chr4 54283124 54289041 -101341079 - L1_Mus3 LINE L1 -1 6637 492 4 999 218 254 28 0 chr4 54290307 54290378 -101339742 - L2c LINE L2 0 3387 3315 4 999 245 267 0 22 chr4 54290803 54290895 -101339225 + L1M2 LINE L1 4564 4653 -1490 4 999 1637 254 82 8 chr4 54290950 54291477 -101338643 + L1_Mur3 LINE L1 4614 5179 -701 4 999 666 241 20 7 chr4 54292990 54293136 -101336984 - RSINE1 SINE B4 -11 154 7 4 999 876 314 101 3 chr4 54293643 54293959 -101336161 + MLT1A0 LTR MaLR 19 365 0 4 999 1016 59 0 7 chr4 54294230 54294367 -101335753 + (GGAGAA)n Simple_repeat Simple_repeat 6 141 0 4 999 435 342 75 53 chr4 54294551 54294851 -101335269 - B4A SINE B4 -18 274 2 4 999 228 358 55 31 chr4 54295144 54295271 -101334849 + MIRc SINE MIR 2 131 -137 4 999 292 276 69 1 chr4 54295565 54295666 -101334454 + MIRb SINE MIR 21 134 -134 4 999 239 295 0 0 chr4 54295743 54295804 -101334316 + CT-rich Low_complexity Low_complexity 4 64 0 4 999 445 318 48 126 chr4 54296809 54297366 -101332754 + MLT2B2 LTR ERVL 1 514 -1 4 999 352 367 81 14 chr4 54298745 54298955 -101331165 + LTR50 LTR ERVL 1 224 -571 4 999 636 169 35 11 chr4 54299255 54299429 -101330691 - Lx9 LINE L1 -9 7635 7458 4 999 189 107 0 0 chr4 54299436 54299464 -101330656 + (CATA)n Simple_repeat Simple_repeat 2 29 0 4 999 1360 213 18 27 chr4 54299464 54299797 -101330323 - Lx9 LINE L1 -127 7517 7188 4 999 327 337 51 37 chr4 54300252 54300468 -101329652 - L1MEf LINE L1 -4483 2619 2401 4 999 1218 97 0 0 chr4 54300469 54300644 -101329476 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 4 999 220 255 0 21 chr4 54300644 54300692 -101329428 + polypyrimidine Low_complexity Low_complexity 1 47 0 4 999 255 196 0 0 chr4 54300736 54300782 -101329338 - L1MEf LINE L1 -5132 2202 2157 4 999 234 0 0 0 chr4 54300906 54300932 -101329188 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 999 523 269 122 0 chr4 54301224 54301380 -101328740 + ORR1E LTR MaLR 7 181 -178 4 999 701 144 0 6 chr4 54301402 54301563 -101328557 + (TC)n Simple_repeat Simple_repeat 2 161 0 4 999 284 324 57 102 chr4 54301563 54301780 -101328340 + ORR1E LTR MaLR 165 379 0 4 999 401 276 130 0 chr4 54302002 54302125 -101327995 - B1F SINE Alu -7 142 4 4 999 310 340 39 115 chr4 54302151 54302507 -101327613 - L1MEf LINE L1 -5489 1507 1179 4 999 308 338 127 18 chr4 54302822 54303024 -101327096 - MIR SINE MIR -21 247 19 4 999 446 359 31 59 chr4 54303152 54303374 -101326746 - B4A SINE B4 -74 218 3 4 999 522 0 0 0 chr4 54303560 54303618 -101326502 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 4 999 1609 254 42 10 chr4 54303714 54304120 -101326000 + MTD LTR MaLR 1 419 0 4 999 201 250 0 0 chr4 54304543 54304603 -101325517 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 999 283 234 40 8 chr4 54304604 54304729 -101325391 + (CAGA)n Simple_repeat Simple_repeat 2 130 0 4 999 234 81 0 0 chr4 54304730 54304767 -101325353 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 4 999 291 54 0 0 chr4 54304774 54304811 -101325309 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 999 766 131 14 0 chr4 54304812 54304957 -101325163 + (GA)n Simple_repeat Simple_repeat 2 148 0 4 999 401 360 18 30 chr4 54305917 54306086 -101324034 + MER63A DNA AcHobo 5 171 -39 4 999 281 364 48 95 chr4 54306730 54306982 -101323138 - MamGypLTR3 LTR Gypsy -314 525 286 4 999 249 324 68 96 chr4 54307025 54307390 -101322730 + MamRep605 Unknown Unknown 260 614 -262 4 999 892 271 61 25 chr4 54307394 54307674 -101322446 + B4 SINE B4 1 290 -2 4 999 480 129 30 0 chr4 54307682 54307783 -101322337 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 999 485 337 128 92 chr4 54308050 54308442 -101321678 - LTR33A_ LTR ERVL -54 477 72 4 999 245 286 29 0 chr4 54308984 54309054 -101321066 - MIR SINE MIR -62 146 75 4 999 255 292 79 83 chr4 54309844 54310072 -101320048 + L2a LINE L2 2989 3215 -211 4 999 288 230 44 9 chr4 54310072 54310186 -101319934 + (CTCA)n Simple_repeat Simple_repeat 4 121 0 4 999 555 16 0 0 chr4 54310410 54310474 -101319646 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 999 910 294 69 26 chr4 54310813 54311190 -101318930 - MLT1D LTR MaLR 0 505 113 4 999 483 237 86 17 chr4 54311608 54311724 -101318396 + B1F SINE Alu 5 128 -21 4 999 374 255 6 175 chr4 54311724 54311768 -101318352 + ID_B1 SINE B4 94 217 -7 4 999 629 295 87 107 chr4 54312562 54312943 -101317177 + MTE2a LTR MaLR 20 403 -16 4 999 549 0 0 0 chr4 54314368 54314429 -101315691 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 999 539 243 134 26 chr4 54314882 54315076 -101315044 - ID_B1 SINE B4 -9 215 1 4 999 305 311 109 16 chr4 54315628 54315811 -101314309 + L1MEf LINE L1 1479 1678 -4522 4 999 293 190 23 12 chr4 54316656 54316740 -101313380 - L1MEe LINE L1 -3932 2214 2134 4 999 1341 228 25 6 chr4 54317170 54317492 -101312628 - Lx9 LINE L1 -711 6933 6606 4 999 723 132 84 13 chr4 54317492 54317646 -101312474 + Lx9 LINE L1 7473 7637 -7 4 999 519 304 115 0 chr4 54317681 54317872 -101312248 - B3 SINE B2 -3 213 1 4 999 521 291 108 56 chr4 54318317 54318537 -101311583 - L1ME2z LINE L1 -543 5901 5671 4 999 1043 116 0 0 chr4 54318537 54318683 -101311437 - B1_Mus2 SINE Alu 0 147 2 4 999 521 271 91 42 chr4 54318683 54319100 -101311020 - L1ME2z LINE L1 -509 5670 5220 4 999 331 312 68 17 chr4 54319101 54319277 -101310843 - L1MC LINE L1 -956 5190 5006 4 999 281 222 58 152 chr4 54319522 54319745 -101310375 - L1ME2z LINE L1 -1442 4704 4503 4 999 475 297 99 86 chr4 54319761 54320085 -101310035 + MTD LTR MaLR 1 328 -91 4 999 1619 212 74 18 chr4 54320118 54320511 -101309609 + MTD LTR MaLR 3 417 -2 4 999 21 36 0 0 chr4 54320534 54320562 -101309558 + AT_rich Low_complexity Low_complexity 1 28 0 4 999 429 20 0 0 chr4 54320605 54320655 -101309465 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 999 458 252 58 58 chr4 54320655 54320794 -101309326 - RSINE1 SINE B4 -24 141 3 4 999 893 249 14 0 chr4 54320874 54321083 -101309037 - B3 SINE B2 -4 212 1 4 999 331 267 10 0 chr4 54321251 54321352 -101308768 - L1ME2z LINE L1 -2590 3556 3455 4 999 548 95 12 0 chr4 54323622 54323706 -101306414 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 999 212 379 0 28 chr4 54324120 54324226 -101305894 - L3 LINE CR1 -294 4195 4093 4 999 260 380 24 18 chr4 54324747 54324916 -101305204 + MER5A DNA MER1_type 4 173 -16 4 999 1508 264 26 16 chr4 54325267 54325655 -101304465 + MTD LTR MaLR 12 403 -16 4 999 484 348 65 16 chr4 54326429 54326739 -101303381 + L3 LINE CR1 3541 3865 -624 4 999 483 322 81 63 chr4 54326812 54327147 -101302973 + ORR1E LTR MaLR 19 359 0 4 999 480 365 121 43 chr4 54327318 54327513 -101302607 - L2a LINE L2 -4 3422 3234 4 999 5231 69 16 18 chr4 54327513 54328218 -101301902 - L1Md_F2 LINE L1 -3 6579 5877 4 999 524 282 67 0 chr4 54328218 54328367 -101301753 - RSINE1 SINE B4 -4 161 3 4 999 480 365 121 43 chr4 54328367 54328568 -101301552 - L2a LINE L2 -193 3233 2995 4 999 363 121 0 0 chr4 54328803 54328861 -101301259 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 4 999 222 330 44 9 chr4 54328914 54329027 -101301093 - L2a LINE L2 -766 2653 2537 4 999 13641 169 36 19 chr4 54329153 54332779 -101297341 + L1_Mur3 LINE L1 276 4048 -1832 4 999 5503 204 45 66 chr4 54332754 54333653 -101296467 + Lx7 LINE L1 6415 7354 -342 4 999 846 98 0 0 chr4 54333653 54333775 -101296345 + (TCCC)n Simple_repeat Simple_repeat 4 125 0 4 999 5503 204 45 66 chr4 54333775 54334185 -101295935 + Lx7 LINE L1 7355 7696 0 4 999 22 0 0 0 chr4 54334462 54334484 -101295636 + AT_rich Low_complexity Low_complexity 1 22 0 4 999 893 142 7 0 chr4 54334627 54334782 -101295338 + (TTC)n Simple_repeat Simple_repeat 1 156 0 5 999 392 348 85 32 chr4 54334953 54335330 -101294790 - L1MC4 LINE L1 -149 7893 7497 5 999 233 183 0 62 chr4 54335425 54335489 -101294631 - L1MC4 LINE L1 -489 7393 7334 5 999 293 288 161 37 chr4 54335791 54336033 -101294087 - L1MC4 LINE L1 -1040 7002 6731 5 999 24 0 0 0 chr4 54336102 54336126 -101293994 + AT_rich Low_complexity Low_complexity 1 24 0 5 999 741 295 60 0 chr4 54337262 54337462 -101292658 + ID_B1 SINE B4 12 223 -1 5 999 207 0 0 0 chr4 54337473 54337496 -101292624 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 999 368 387 42 25 chr4 54337798 54338039 -101292081 + L4 LINE RTE 1181 1425 -604 5 999 244 328 49 56 chr4 54338592 54338734 -101291386 + L4 LINE RTE 1685 1825 -204 5 999 324 48 0 0 chr4 54338800 54338842 -101291278 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 999 233 135 0 19 chr4 54338972 54339025 -101291095 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 999 449 200 18 37 chr4 54339098 54339207 -101290913 - PB1D9 SINE Alu -5 115 9 5 999 684 35 0 0 chr4 54342392 54342479 -101287641 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 999 291 381 55 18 chr4 54342545 54342708 -101287412 + MIR SINE MIR 16 184 -78 5 999 24 32 0 0 chr4 54342744 54342775 -101287345 + AT_rich Low_complexity Low_complexity 1 31 0 5 999 504 0 0 0 chr4 54343863 54343919 -101286201 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 999 206 245 0 20 chr4 54345207 54345257 -101284863 + CT-rich Low_complexity Low_complexity 5 53 0 5 999 757 290 99 15 chr4 54347228 54347501 -101282619 + L1MC1 LINE L1 6023 6318 -15 5 999 418 299 83 32 chr4 54347517 54347735 -101282385 + L1MB3 LINE L1 5953 6181 -2 5 999 408 40 0 0 chr4 54348084 54348134 -101281986 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 999 402 121 0 0 chr4 54348134 54348199 -101281921 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 999 1639 125 5 0 chr4 54348559 54348783 -101281337 + URR1A DNA MER1_type 2 226 0 5 999 217 150 0 24 chr4 54349571 54349612 -101280508 + CT-rich Low_complexity Low_complexity 1 40 0 5 999 218 32 0 31 chr4 54349950 54349982 -101280138 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 999 1395 0 0 0 chr4 54351115 54351270 -101278850 + (TATATG)n Simple_repeat Simple_repeat 4 158 0 5 999 793 295 0 6 chr4 54351275 54351432 -101278688 - RSINE1 SINE B4 -8 157 2 5 999 237 331 99 60 chr4 54351514 54351665 -101278455 + L2a LINE L2 2972 3128 -298 5 999 861 10 0 0 chr4 54353280 54353378 -101276742 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 999 262 372 61 33 chr4 54353668 54353882 -101276238 - MER121 Unknown Unknown -176 236 17 5 999 523 327 18 50 chr4 54354233 54354455 -101275665 + MIRb SINE MIR 31 245 -23 5 999 351 282 36 0 chr4 54354578 54354688 -101275432 + MIR3 SINE MIR 46 159 -49 5 999 1019 236 19 0 chr4 54356664 54356876 -101273244 - B3 SINE B2 0 216 1 5 999 181 376 52 15 chr4 54357027 54357162 -101272958 + L2b LINE L2 3233 3372 -3 5 999 213 189 18 36 chr4 54357734 54357789 -101272331 - MIRb SINE MIR 0 268 215 5 999 310 319 17 0 chr4 54357876 54357992 -101272128 - MLT1I LTR MaLR 0 411 294 5 999 567 0 0 0 chr4 54358212 54358275 -101271845 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 5 999 1264 74 0 0 chr4 54358508 54358656 -101271464 - B1_Mus1 SINE Alu 0 148 1 5 999 666 0 0 0 chr4 54359335 54359409 -101270711 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 999 671 250 0 25 chr4 54359873 54360033 -101270087 + Lx7 LINE L1 6174 6329 -1367 5 999 370 228 24 60 chr4 54360050 54360134 -101269986 - B4A SINE B4 -62 230 150 5 999 1567 266 94 65 chr4 54360134 54360793 -101269327 + Lx9 LINE L1 6682 7359 -285 5 999 294 106 0 0 chr4 54360793 54360840 -101269280 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 999 189 0 0 0 chr4 54360947 54360968 -101269152 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 999 1244 291 101 49 chr4 54361155 54361813 -101268307 - L1MA8 LINE L1 -5 6286 5590 5 999 1439 256 49 25 chr4 54361813 54362181 -101267939 + MTE2b LTR MaLR 1 377 -2 5 999 1244 305 87 65 chr4 54362181 54362358 -101267762 - L1MA8 LINE L1 -567 5589 5428 5 999 333 319 95 26 chr4 54362410 54362526 -101267594 - ID_B1 SINE B4 -21 203 80 5 999 288 77 0 0 chr4 54362652 54362691 -101267429 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 999 5879 83 4 0 chr4 54362709 54363443 -101266677 + L1_Mus1 LINE L1 5831 6567 0 5 999 893 147 134 6 chr4 54363471 54363628 -101266492 - B2_Mm2 SINE B2 -18 177 1 5 999 2269 269 79 45 chr4 54363630 54363822 -101266298 - L1MA8 LINE L1 -938 5202 5005 5 999 445 200 0 0 chr4 54363822 54363897 -101266223 + ID4 SINE ID 5 79 -4 5 999 2269 269 79 45 chr4 54363897 54364766 -101265354 - L1MA8 LINE L1 -1136 5004 4105 5 999 1244 231 169 58 chr4 54364819 54365333 -101264787 + RMER4B LTR ERVK 1 571 -14 5 999 686 297 63 14 chr4 54365351 54365638 -101264482 - L1MA8 LINE L1 -2104 4039 3739 5 999 255 305 66 9 chr4 54366607 54366713 -101263407 - MIR SINE MIR -129 133 22 5 999 27 0 0 0 chr4 54367072 54367099 -101263021 + AT_rich Low_complexity Low_complexity 1 27 0 5 999 413 232 121 0 chr4 54367427 54367526 -101262594 + MER121 Unknown Unknown 8 118 -294 5 999 207 0 0 0 chr4 54368291 54368314 -101261806 + (A)n Simple_repeat Simple_repeat 1 23 0 5 999 568 362 54 52 chr4 54368345 54368867 -101261253 + Tigger12A DNA MER2_type 1 523 -268 5 999 615 232 187 53 chr4 54369804 54369991 -101260129 - B3 SINE B2 -1 215 4 5 999 231 387 47 24 chr4 54370221 54370348 -101259772 + L2c LINE L2 3258 3387 0 5 999 261 0 0 0 chr4 54371916 54371945 -101258175 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 999 386 340 50 73 chr4 54372945 54373164 -101256956 - MER20 DNA MER1_type -3 216 3 5 999 204 385 48 32 chr4 54373787 54373913 -101256207 + L2c LINE L2 3260 3387 0 5 999 881 280 56 39 chr4 54375509 54375795 -101254325 - B4 SINE B4 0 292 2 5 999 186 313 0 29 chr4 54376155 54376224 -101253896 - MIRc SINE MIR -17 251 185 5 999 243 88 0 0 chr4 54376231 54376265 -101253855 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 999 1191 47 0 0 chr4 54377081 54377231 -101252889 + (TCCC)n Simple_repeat Simple_repeat 4 153 0 5 999 504 0 0 0 chr4 54377231 54377286 -101252834 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 5 999 327 351 7 22 chr4 54377297 54377434 -101252686 - MIRb SINE MIR -70 198 64 5 999 444 105 0 0 chr4 54378367 54378443 -101251677 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 999 354 45 0 0 chr4 54378443 54378487 -101251633 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 999 21 36 0 0 chr4 54379559 54379587 -101250533 + AT_rich Low_complexity Low_complexity 1 28 0 5 999 288 20 40 20 chr4 54380018 54380068 -101250052 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 999 214 182 18 35 chr4 54380070 54380127 -101249993 + T-rich Low_complexity Low_complexity 5 60 0 5 999 206 267 83 0 chr4 54380920 54380980 -101249140 + MIR SINE MIR 19 83 -179 5 999 238 372 3 25 chr4 54381027 54381137 -101248983 - MIRb SINE MIR -135 141 33 5 999 1869 174 125 5 chr4 54381971 54382340 -101247780 - MTC LTR MaLR -8 413 1 5 999 284 300 12 24 chr4 54382791 54382873 -101247247 - ID4_ SINE ID 0 83 3 5 999 330 169 0 0 chr4 54382935 54383000 -101247120 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 5 999 297 125 0 0 chr4 54384135 54384191 -101245929 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 999 300 197 0 32 chr4 54384855 54384918 -101245202 + MIRc SINE MIR 83 143 -125 5 999 516 216 10 0 chr4 54385618 54385715 -101244405 - 5S rRNA rRNA -23 98 1 5 999 377 313 7 26 chr4 54387187 54387338 -101242782 + C-rich Low_complexity Low_complexity 4 151 0 5 999 1366 204 85 118 chr4 54388529 54388952 -101241168 - MTD LTR MaLR -10 409 1 5 999 415 315 84 24 chr4 54389210 54389376 -101240744 + B4A SINE B4 3 178 -114 5 999 1271 85 0 8 chr4 54389433 54389669 -101240451 + (GAAA)n Simple_repeat Simple_repeat 1 233 0 5 999 251 353 39 10 chr4 54389709 54389783 -101240337 + B4A SINE B4 186 260 -32 5 999 450 0 0 0 chr4 54389783 54389833 -101240287 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 999 251 353 39 10 chr4 54389833 54389861 -101240259 + B4A SINE B4 261 291 -1 5 999 201 147 0 0 chr4 54389936 54389970 -101240150 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 5 999 218 390 87 14 chr4 54390308 54390446 -101239674 - MIRb SINE MIR -61 207 60 5 999 186 209 23 0 chr4 54391235 54391278 -101238842 - MIRm SINE MIR -125 151 108 5 999 310 365 71 16 chr4 54391372 54391466 -101238654 - RMER30 DNA MER1_type -1 201 110 5 999 279 0 0 0 chr4 54391466 54391497 -101238623 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 999 310 365 71 16 chr4 54391497 54391586 -101238534 - RMER30 DNA MER1_type -93 109 10 5 999 734 313 55 28 chr4 54392786 54393349 -101236771 + L1ME2z LINE L1 5255 5864 -580 5 999 964 258 17 13 chr4 54393359 54393591 -101236529 + B4 SINE B4 1 233 -59 5 999 997 252 88 64 chr4 54393690 54394020 -101236100 + MTD LTR MaLR 82 419 0 5 999 240 271 27 54 chr4 54394020 54394085 -101236035 + RSINE1 SINE B4 77 139 -26 5 999 339 25 0 0 chr4 54394085 54394125 -101235995 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 999 459 48 0 0 chr4 54394214 54394276 -101235844 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 999 372 288 77 59 chr4 54394286 54394456 -101235664 + L1ME2z LINE L1 5872 6044 -120 5 999 768 299 14 23 chr4 54394600 54394816 -101235304 - B3A SINE B2 0 216 3 5 1000 32 0 0 0 chr4 54394897 54394929 -101235191 + AT_rich Low_complexity Low_complexity 1 32 0 5 1000 197 65 0 31 chr4 54394950 54394982 -101235138 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1000 685 286 49 42 chr4 54395006 54395294 -101234826 - B4A SINE B4 0 292 3 5 1000 367 277 62 70 chr4 54395505 54395633 -101234487 - ID_B1 SINE B4 -10 214 88 5 1000 231 265 0 0 chr4 54395730 54395779 -101234341 + ID_B1 SINE B4 89 137 -87 5 1000 543 31 0 0 chr4 54395817 54395882 -101234238 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1000 210 143 0 0 chr4 54396849 54396884 -101233236 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6 1000 211 191 0 0 chr4 54397102 54397144 -101232976 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1000 234 346 117 19 chr4 54397363 54397525 -101232595 + MIR SINE MIR 8 185 -77 6 1000 339 25 0 0 chr4 54397600 54397640 -101232480 + (CTAA)n Simple_repeat Simple_repeat 4 43 0 6 1000 484 306 43 24 chr4 54397690 54397854 -101232266 - MLT1B LTR MaLR 0 390 224 6 1000 246 303 0 0 chr4 54398201 54398267 -101231853 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 6 1000 841 299 199 6 chr4 54398312 54398669 -101231451 + Tigger7 DNA MER2_type 5 430 -275 6 1000 233 201 131 28 chr4 54398728 54398808 -101231312 - ORR1E LTR MaLR -13 366 278 6 1000 333 0 0 0 chr4 54398886 54398923 -101231197 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1000 265 205 19 110 chr4 54398934 54399197 -101230923 - RMER17D LTR ERVK -416 473 235 6 1000 340 328 17 8 chr4 54399161 54399281 -101230839 - ORR1E LTR MaLR -238 121 1 6 1000 403 289 165 21 chr4 54399281 54399475 -101230645 + MER44D DNA MER2_type 479 700 -5 6 1000 244 330 98 0 chr4 54399539 54399651 -101230469 + L2a LINE L2 3277 3399 -27 6 1000 427 332 83 83 chr4 54400612 54400842 -101229278 + MIR SINE MIR 2 231 -37 6 1000 214 283 0 48 chr4 54401070 54401133 -101228987 - MIRm SINE MIR 0 276 217 6 1000 222 59 98 0 chr4 54401445 54401496 -101228624 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 6 1000 524 293 96 0 chr4 54401623 54401821 -101228299 - ID_B1 SINE B4 -7 217 1 6 1000 253 396 28 7 chr4 54402328 54402473 -101227647 + MIRc SINE MIR 11 158 -110 6 1000 270 0 0 0 chr4 54403525 54403555 -101226565 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1000 245 333 63 28 chr4 54404087 54404229 -101225891 - MIRb SINE MIR -121 147 1 6 1000 872 74 85 43 chr4 54405637 54405778 -101224342 + B1_Mus2 SINE Alu 1 147 0 6 1000 235 0 57 0 chr4 54405778 54405813 -101224307 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1000 351 0 0 0 chr4 54405815 54405854 -101224266 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1000 180 0 0 0 chr4 54406835 54406855 -101223265 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1000 315 0 0 0 chr4 54406855 54406889 -101223231 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1000 328 290 30 66 chr4 54406980 54407146 -101222974 + L1MEf LINE L1 387 546 -5590 6 1000 412 348 103 43 chr4 54407176 54407390 -101222730 + L1MEf LINE L1 627 864 -5378 6 1000 555 56 0 0 chr4 54407390 54407461 -101222659 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 1000 412 348 103 43 chr4 54407461 54407711 -101222409 + L1MEf LINE L1 865 1119 -5123 6 1000 297 0 0 0 chr4 54407922 54407955 -101222165 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1000 301 265 36 81 chr4 54407975 54408009 -101222111 + L1MEf LINE L1 3043 3076 -3070 6 1000 222 118 0 0 chr4 54408009 54408043 -101222077 + (ATG)n Simple_repeat Simple_repeat 3 36 0 6 1000 301 265 36 81 chr4 54408043 54408119 -101222001 + L1MEf LINE L1 3077 3148 -2998 6 1000 37042 38 1 8 chr4 54408139 54414114 -101216006 - L1Md_T LINE L1 -1 6584 563 6 1000 757 292 46 32 chr4 54414174 54414752 -101215368 + L1MEf LINE L1 3220 3812 -2334 6 1000 623 336 52 13 chr4 54415074 54415306 -101214814 - B4 SINE B4 -50 242 2 6 1000 336 167 76 13 chr4 54415616 54415695 -101214425 + URR1B DNA MER1_type 102 185 -40 6 1000 641 341 56 61 chr4 54415902 54416261 -101213859 + ORR1E LTR MaLR 1 357 -2 6 1000 331 262 211 36 chr4 54416401 54416567 -101213553 + RLTR9A LTR ERVK 1 195 -173 6 1000 745 294 65 0 chr4 54416567 54416781 -101213339 + MTEb LTR MaLR 152 379 0 6 1000 230 388 16 0 chr4 54416929 54417050 -101213070 - MLT1E2 LTR MaLR -21 603 481 6 1000 411 276 37 101 chr4 54417241 54417430 -101212690 - MLT1E2 LTR MaLR -166 461 285 6 1000 527 254 145 63 chr4 54417508 54417840 -101212280 - RLTR10D LTR ERVK 0 359 1 6 1000 248 283 73 118 chr4 54417943 54418147 -101211973 + ORR1C2 LTR MaLR 63 257 -127 6 1000 362 216 136 0 chr4 54418667 54418755 -101211365 + B3A SINE B2 1 100 -98 6 1000 1326 219 187 65 chr4 54419907 54420341 -101209779 + MT2A LTR ERVL 1 492 -41 6 1000 240 111 0 0 chr4 54420341 54420377 -101209743 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1000 1326 219 187 65 chr4 54420377 54420417 -101209703 + MT2A LTR ERVL 493 532 -1 6 1000 270 306 24 24 chr4 54421634 54421761 -101208359 - L3 LINE CR1 -1586 2903 2777 6 1000 20596 158 23 16 chr4 54422303 54426652 -101203468 - Lx4B LINE L1 -618 6440 2065 6 1000 456 19 0 0 chr4 54426652 54426705 -101203415 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1000 20596 157 24 17 chr4 54426705 54427016 -101203104 - Lx4B LINE L1 -3813 2064 1773 6 1000 1200 232 1 7 chr4 54427096 54427453 -101202667 - Lx4B LINE L1 -5924 1162 817 6 1000 1193 257 48 25 chr4 54427807 54428122 -101201998 - MER2 DNA MER2_type -23 322 1 6 1000 234 380 6 101 chr4 54428258 54428416 -101201704 + MLT1H1 LTR MaLR 10 152 -403 6 1000 321 269 82 52 chr4 54428749 54428980 -101201140 + HAL1 LINE L1 2270 2507 0 6 1000 432 0 0 0 chr4 54429443 54429491 -101200629 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1000 831 296 17 95 chr4 54429502 54429599 -101200521 - B4A SINE B4 -20 272 186 6 1000 1235 173 9 18 chr4 54429599 54429823 -101200297 - URR1A DNA MER1_type 0 226 5 6 1000 831 296 17 95 chr4 54429823 54430020 -101200100 - B4A SINE B4 -107 185 1 6 1000 1589 204 16 21 chr4 54430671 54431047 -101199073 + ORR1D1 LTR MaLR 1 374 0 6 1000 417 304 87 51 chr4 54431416 54431532 -101198588 - Lx8 LINE L1 -10 7463 7356 6 1000 577 65 27 27 chr4 54431532 54431642 -101198478 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 6 1000 417 304 87 51 chr4 54431642 54431662 -101198458 - Lx8 LINE L1 -118 7355 7337 6 1000 405 0 0 0 chr4 54431662 54431707 -101198413 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1000 417 304 87 51 chr4 54431707 54431822 -101198298 - Lx8 LINE L1 -137 7336 7204 6 1000 250 337 11 23 chr4 54432279 54432367 -101197753 - MIRb SINE MIR -54 214 128 6 1000 21 0 0 0 chr4 54433485 54433506 -101196614 + AT_rich Low_complexity Low_complexity 1 21 0 6 1000 842 211 37 43 chr4 54434300 54434488 -101195632 - B3A SINE B2 0 198 12 6 1000 194 323 50 70 chr4 54435691 54435791 -101194329 - MIRb SINE MIR -103 165 68 6 1000 192 97 0 0 chr4 54436447 54436478 -101193642 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1000 241 372 58 32 chr4 54437067 54437256 -101192864 + MIRb SINE MIR 15 208 -60 6 1000 402 21 0 0 chr4 54437258 54437305 -101192815 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1000 597 64 0 0 chr4 54437305 54437383 -101192737 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1000 221 40 58 39 chr4 54437535 54437587 -101192533 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 6 1000 629 318 58 58 chr4 54437587 54438004 -101192116 + Lx8 LINE L1 6855 7271 -202 6 1000 228 231 0 19 chr4 54438947 54439000 -101191120 - L2c LINE L2 -47 3340 3289 6 1000 549 0 0 0 chr4 54440179 54440240 -101189880 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1000 4237 144 80 5 chr4 54440243 54441660 -101188460 - Lx LINE L1 -6 6648 5127 6 1000 687 25 0 0 chr4 54442492 54442573 -101187547 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1000 386 38 0 19 chr4 54442573 54442626 -101187494 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1000 537 16 0 0 chr4 54442739 54442801 -101187319 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1000 238 350 20 59 chr4 54442803 54442955 -101187165 - MIRb SINE MIR -81 187 42 6 1000 725 322 124 19 chr4 54443334 54443889 -101186231 - L2a LINE L2 -3 3423 2797 6 1000 1531 205 131 8 chr4 54444037 54444410 -101185710 + MTD LTR MaLR 1 419 0 6 1000 473 319 205 34 chr4 54445630 54445864 -101184256 + B4A SINE B4 16 289 -3 6 1000 198 384 170 26 chr4 54446647 54447070 -101183050 - L2a LINE L2 -2463 956 473 6 1000 323 212 41 29 chr4 54447072 54447242 -101182878 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 6 1000 498 332 45 31 chr4 54449104 54449325 -101180795 - MLT2C1 LTR ERVL -107 290 67 6 1000 3033 249 31 25 chr4 54449325 54450094 -101180026 - RCHARR1 DNA MER1_type 0 974 201 6 1000 3070 27 24 0 chr4 54450096 54450471 -101179649 - MTA_Mm LTR MaLR -12 384 1 6 1000 557 319 43 11 chr4 54450471 54450654 -101179466 - RCHARR1 DNA MER1_type -783 191 3 6 1000 320 381 55 41 chr4 54450883 54451228 -101178892 + L1M5 LINE L1 2436 2785 -3361 6 1000 299 264 87 104 chr4 54451263 54451436 -101178684 - MLT2F LTR ERVL -8 655 486 6 1000 653 327 176 15 chr4 54451625 54451898 -101178222 - MLT2F LTR ERVL -326 337 21 6 1000 278 307 7 28 chr4 54451977 54452121 -101177999 + L1M5 LINE L1 2905 3045 -3101 6 1000 410 270 90 9 chr4 54452137 54452519 -101177601 + L1M5 LINE L1 3096 3513 -2633 6 1000 300 356 73 51 chr4 54452641 54452955 -101177165 + L1M5 LINE L1 3704 4024 -2122 6 1000 1078 291 63 0 chr4 54453039 54453384 -101176736 - MTE2b LTR MaLR 0 379 2 6 1000 2279 38 59 0 chr4 54453584 54453873 -101176247 - L1Md_F2 LINE L1 0 6582 6277 6 1000 288 0 0 0 chr4 54453873 54453905 -101176215 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1000 36493 48 0 3 chr4 54453905 54460684 -101169436 - L1Md_T LINE L1 0 6585 1 6 1000 33466 64 2 1 chr4 54460679 54466416 -101163704 - L1Md_F2 LINE L1 -286 6296 550 6 1000 365 319 54 38 chr4 54466421 54466682 -101163438 + L1ME2z LINE L1 5395 5659 -785 6 1000 358 351 58 18 chr4 54466853 54467355 -101162765 + L1ME2z LINE L1 5905 6426 -18 6 1000 477 0 0 0 chr4 54467394 54467447 -101162673 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1000 887 242 26 76 chr4 54467482 54467786 -101162334 + B4A SINE B4 3 291 -1 6 1000 399 21 0 0 chr4 54467802 54467850 -101162270 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1000 188 297 0 75 chr4 54468717 54468797 -101161323 - L2 LINE L2 -834 2585 2512 6 1000 201 250 46 15 chr4 54468811 54468876 -101161244 + CT-rich Low_complexity Low_complexity 6 72 0 6 1000 256 276 35 79 chr4 54469370 54469484 -101160636 - L4 LINE RTE -236 1793 1685 6 1000 474 347 43 27 chr4 54469695 54469953 -101160167 - L4 LINE RTE -360 1669 1408 6 1000 525 217 9 9 chr4 54469995 54470111 -101160009 - LTR33 LTR ERVL -2 513 398 6 1000 2976 271 102 25 chr4 54470223 54470840 -101159280 - Lx8 LINE L1 -28 7445 6783 6 1000 8122 27 1 0 chr4 54470840 54471768 -101158352 - RLTR13B3 LTR ERVK 0 929 1 6 1000 2976 271 102 25 chr4 54471768 54472289 -101157831 - Lx8 LINE L1 -691 6782 6219 6 1000 363 335 58 31 chr4 54472804 54472995 -101157125 + L1MC5 LINE L1 6638 6833 -1128 6 1000 747 197 14 40 chr4 54473309 54473368 -101156752 - B1F2 SINE Alu -5 144 90 6 1000 1125 237 137 12 chr4 54473368 54473697 -101156423 - ORR1D2 LTR MaLR 0 370 1 6 1000 747 197 14 40 chr4 54473697 54473785 -101156335 - B1F2 SINE Alu -60 89 1 6 1000 278 292 83 43 chr4 54473922 54474297 -101155823 + L1MC5 LINE L1 7393 7782 -179 6 1000 383 139 10 29 chr4 54474399 54474503 -101155617 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1000 339 25 0 0 chr4 54474977 54475017 -101155103 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1000 246 357 186 0 chr4 54475579 54475719 -101154401 - MIRb SINE MIR -50 218 53 6 1000 208 280 0 0 chr4 54477174 54477224 -101152896 + GA-rich Low_complexity Low_complexity 1 50 0 6 1000 675 319 104 54 chr4 54477653 54478077 -101152043 + MLT1D LTR MaLR 5 449 -56 7 1000 351 337 34 69 chr4 54478137 54478312 -101151808 + MER5B DNA MER1_type 3 171 -7 7 1000 4191 164 70 69 chr4 54478593 54479494 -101150626 + RMER19B LTR ERVK 1 902 0 7 1000 339 322 70 14 chr4 54479977 54480191 -101149929 - Lx8 LINE L1 0 7473 7248 7 1000 1122 136 26 5 chr4 54481226 54481418 -101148702 + 7SLRNA srpRNA srpRNA 37 232 -82 7 1000 195 257 64 0 chr4 54482445 54482518 -101147602 + MIRc SINE MIR 99 179 -89 7 1000 201 179 0 25 chr4 54483344 54483384 -101146736 + CT-rich Low_complexity Low_complexity 2 40 0 7 1000 369 0 0 0 chr4 54485328 54485369 -101144751 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1000 324 0 0 0 chr4 54485369 54485404 -101144716 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1000 258 56 0 0 chr4 54487260 54487296 -101142824 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1000 258 314 45 8 chr4 54488257 54488374 -101141746 - MIR SINE MIR -94 174 43 7 1000 321 26 0 0 chr4 54489986 54490024 -101140096 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1000 599 359 36 94 chr4 54490067 54490375 -101139745 - B4A SINE B4 -2 290 1 7 1000 312 27 0 0 chr4 54490928 54490965 -101139155 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 7 1000 1108 57 23 6 chr4 54490970 54491145 -101138975 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 7 1000 2248 164 26 3 chr4 54491785 54492170 -101137950 + ORR1B1 LTR MaLR 1 394 0 7 1000 1090 72 0 0 chr4 54494023 54494162 -101135958 + B1_Mus1 SINE Alu 1 139 -9 7 1000 380 37 19 0 chr4 54494162 54494216 -101135904 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 1000 1301 14 0 0 chr4 54495108 54495255 -101134865 - B1_Mm SINE Alu 0 147 1 7 1000 450 0 0 0 chr4 54495327 54495377 -101134743 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1000 202 269 58 0 chr4 54495500 54495552 -101134568 + L2c LINE L2 3289 3343 -44 7 1000 563 314 69 0 chr4 54495857 54496032 -101134088 + MTD LTR MaLR 18 204 -215 7 1000 14755 8 0 0 chr4 54497562 54500000 -101130120 - L1Md_A LINE L1 0 6582 4144 7 1000 25910 12 2 10 chr4 54500000 54503921 -101126199 - L1Md_A LINE L1 -1740 4143 258 1 1000 25 0 0 0 chr4 54503926 54503951 -101126169 + AT_rich Low_complexity Low_complexity 1 25 0 2 1000 1055 293 86 37 chr4 54504016 54504583 -101125537 + L1MA6 LINE L1 5677 6271 -29 3 1000 573 318 18 15 chr4 54504663 54504872 -101125248 - B3 SINE B2 -6 210 1 4 1000 38 0 0 0 chr4 54505061 54505099 -101125021 + AT_rich Low_complexity Low_complexity 1 38 0 5 1000 828 187 170 5 chr4 54505249 54505443 -101124677 + URR1A DNA MER1_type 1 226 0 6 1000 423 0 0 0 chr4 54506429 54506476 -101123644 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1000 372 122 57 63 chr4 54506585 54506685 -101123435 + B1_Mm SINE Alu 42 140 -9 8 1000 363 170 0 0 chr4 54508100 54508200 -101121920 + A-rich Low_complexity Low_complexity 1 100 0 9 1000 260 270 39 39 chr4 54508203 54508280 -101121840 - MER53 DNA hAT -116 77 1 1 1000 231 308 13 13 chr4 54509028 54509107 -101121013 - MIR SINE MIR -79 183 105 1 1000 228 98 19 56 chr4 54509315 54509369 -101120751 + A-rich Low_complexity Low_complexity 2 53 0 1 1000 3415 63 15 0 chr4 54509483 54509895 -101120225 + BGLII LTR ERVK 4 421 0 1 1000 293 270 19 62 chr4 54510184 54510346 -101119774 + L1M6 LINE L1 1944 2098 -4398 1 1000 1574 138 127 85 chr4 54510575 54510915 -101119205 + ORR1A4 LTR MaLR 37 390 -4 1 1000 10086 171 22 102 chr4 54510919 54513052 -101117068 + ORR1A4-int LTR MaLR 1 1963 0 1 1000 1906 116 8 109 chr4 54513058 54513415 -101116705 + ORR1A4 LTR MaLR 7 327 -2 1 1000 188 293 200 15 chr4 54513641 54513776 -101116344 + L2a LINE L2 3262 3421 -5 1 1000 385 274 110 26 chr4 54514017 54514208 -101115912 + Lx8 LINE L1 7265 7471 -2 1 1000 669 226 16 0 chr4 54514406 54514530 -101115590 - RSINE1 SINE B4 -37 128 3 1 1000 198 71 0 0 chr4 54516615 54516643 -101113477 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1000 593 325 147 17 chr4 54517026 54517373 -101112747 + MLT1G1 LTR MaLR 92 483 -96 2 1000 219 103 0 0 chr4 54518305 54518344 -101111776 + (TTAG)n Simple_repeat Simple_repeat 3 41 0 2 1000 315 319 91 29 chr4 54518757 54518999 -101111121 - L1ME3A LINE L1 -4 6169 5913 2 1000 342 0 0 0 chr4 54519308 54519346 -101110774 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1000 1162 214 10 0 chr4 54519502 54519708 -101110412 - B3 SINE B2 -8 208 1 2 1000 495 48 0 0 chr4 54520342 54520404 -101109716 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1000 240 289 135 18 chr4 54520425 54520654 -101109466 - L1MEg LINE L1 -4687 1397 1142 2 1000 44 70 0 0 chr4 54520693 54520779 -101109341 + AT_rich Low_complexity Low_complexity 1 86 0 2 1000 354 277 83 17 chr4 54520780 54520960 -101109160 - L1MEg LINE L1 -4941 1143 952 2 1000 226 341 174 12 chr4 54521131 54521303 -101108817 - L1MEg LINE L1 -5468 616 417 2 1000 22 35 0 0 chr4 54521323 54521352 -101108768 + AT_rich Low_complexity Low_complexity 1 29 0 2 1000 1015 222 128 154 chr4 54521601 54521811 -101108309 - RMER4B LTR ERVK -14 597 336 2 1000 1347 25 0 0 chr4 54521811 54521970 -101108150 + (TCTCCC)n Simple_repeat Simple_repeat 4 162 0 3 1000 1015 219 138 163 chr4 54521970 54522340 -101107780 - RMER4B LTR ERVK -250 335 1 2 1000 256 242 101 50 chr4 54522377 54522516 -101107604 - L1MEg LINE L1 -5915 169 24 2 1000 234 286 186 15 chr4 54523118 54523317 -101106803 - L2a LINE L2 0 3426 3194 3 1000 345 331 46 38 chr4 54524863 54525124 -101104996 - L1M5 LINE L1 -1488 4658 4396 3 1000 207 0 0 0 chr4 54525469 54525492 -101104628 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1000 513 0 0 0 chr4 54525789 54525846 -101104274 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 15 647 304 0 0 chr4 54525847 54525982 -101104138 - RSINE1 SINE B4 -26 139 5 3 1001 187 343 27 54 chr4 54526053 54526164 -101103956 + L2 LINE L2 2502 2609 -810 3 1001 432 69 0 101 chr4 54528665 54528794 -101101326 + CT-rich Low_complexity Low_complexity 4 119 0 3 1001 204 67 0 0 chr4 54529176 54529206 -101100914 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1001 657 0 0 0 chr4 54529206 54529278 -101100842 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1001 1341 211 131 64 chr4 54529796 54530171 -101099949 + MTD LTR MaLR 6 405 -14 4 1001 284 338 91 24 chr4 54530245 54530454 -101099666 + MIRb SINE MIR 14 236 -32 4 1001 272 333 24 16 chr4 54530658 54530783 -101099337 - MIRb SINE MIR -55 213 88 4 1001 336 354 56 0 chr4 54530814 54530975 -101099145 - MER5B DNA MER1_type -4 174 5 4 1001 558 79 0 0 chr4 54531701 54531777 -101098343 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 4 1001 663 271 0 20 chr4 54533421 54533568 -101096552 + B1_Mur2 SINE Alu 1 144 -5 4 1001 1147 196 15 5 chr4 54533581 54533786 -101096334 + B3 SINE B2 6 212 -4 4 1001 445 242 32 0 chr4 54533972 54534067 -101096053 - B1_Mur1 SINE Alu 0 149 52 4 1001 239 316 126 28 chr4 54534136 54534318 -101095802 - MER46C DNA MER2_type -131 207 8 4 1001 367 283 28 19 chr4 54534351 54534459 -101095661 + MIR SINE MIR 154 262 0 4 1001 263 242 0 46 chr4 54534918 54534983 -101095137 - L2c LINE L2 -11 3376 3315 5 1001 870 292 69 16 chr4 54535377 54535683 -101094437 + MER2 DNA MER2_type 23 344 -1 5 1001 180 0 0 0 chr4 54536026 54536046 -101094074 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1001 365 115 9 37 chr4 54537811 54537919 -101092201 + T-rich Low_complexity Low_complexity 2 106 0 5 1001 343 284 119 18 chr4 54538423 54538642 -101091478 - MIR SINE MIR -9 253 13 5 1001 196 235 39 0 chr4 54539750 54539801 -101090319 - MIRb SINE MIR -18 250 198 5 1001 180 375 84 42 chr4 54540114 54540256 -101089864 - L2b LINE L2 0 3375 3228 5 1001 1383 285 22 0 chr4 54542709 54543073 -101087047 - MTEb LTR MaLR -3 367 1 5 1001 180 299 15 15 chr4 54543182 54543250 -101086870 + L2 LINE L2 970 1037 -2382 5 1001 783 170 230 0 chr4 54543291 54543456 -101086664 + URR1A DNA MER1_type 1 203 -23 5 1001 2713 278 98 17 chr4 54543501 54544386 -101085734 + Lx8 LINE L1 6225 7181 -292 6 1001 570 167 0 0 chr4 54545668 54545800 -101084320 + CT-rich Low_complexity Low_complexity 1 132 0 6 1001 324 83 0 0 chr4 54545800 54545848 -101084272 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1001 497 331 17 0 chr4 54546040 54546215 -101083905 - MLT1A LTR MaLR 0 374 197 6 1001 4478 70 7 0 chr4 54548584 54549156 -101080964 - L1_Mus3 LINE L1 -355 6283 5708 6 1001 2399 94 3 3 chr4 54549158 54549477 -101080643 + L1_Mus3 LINE L1 6320 6638 0 6 1001 721 278 162 16 chr4 54549701 54550133 -101079987 + L1MB4 LINE L1 5298 5792 -392 6 1001 1051 127 6 12 chr4 54550185 54550345 -101079775 + B2_Mm2 SINE B2 2 160 -35 6 1001 690 13 0 0 chr4 54550349 54550428 -101079692 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 6 1001 255 224 65 76 chr4 54550453 54550545 -101079575 + L1MB4 LINE L1 5861 5951 -229 6 1001 261 162 0 39 chr4 54550636 54550713 -101079407 + (TTTG)n Simple_repeat Simple_repeat 4 77 0 6 1001 1982 124 61 67 chr4 54550883 54551211 -101078909 - ORR1A3 LTR MaLR 0 326 1 6 1001 413 281 0 0 chr4 54551564 54551653 -101078467 + B1F1 SINE Alu 39 127 -22 7 1001 528 45 0 0 chr4 54551696 54551763 -101078357 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1001 252 0 0 0 chr4 54553527 54553555 -101076565 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1001 492 18 0 0 chr4 54553611 54553668 -101076452 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1001 225 338 43 43 chr4 54554035 54554163 -101075957 + MTEb LTR MaLR 6 135 -244 7 1001 1196 62 6 0 chr4 54554163 54554325 -101075795 + (TTC)n Simple_repeat Simple_repeat 1 163 0 7 1001 255 216 0 19 chr4 54554335 54554387 -101075733 + CT-rich Low_complexity Low_complexity 3 53 0 7 1001 499 300 122 34 chr4 54554388 54554709 -101075411 + MT2A LTR ERVL 179 527 -6 7 1001 642 238 102 78 chr4 54554902 54555157 -101074963 - MTEa LTR MaLR -3 376 116 7 1001 915 264 5 10 chr4 54555151 54555346 -101074774 + B4A SINE B4 97 290 -2 7 1001 180 0 0 0 chr4 54555352 54555372 -101074748 + (CATG)n Simple_repeat Simple_repeat 1 20 0 8 1001 222 37 0 0 chr4 54556008 54556035 -101074085 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 8 1001 649 282 79 29 chr4 54556700 54557040 -101073080 + L1MD1 LINE L1 4481 4837 -1309 8 1001 282 270 34 0 chr4 54557085 54557174 -101072946 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 8 1001 874 286 59 4 chr4 54557182 54557438 -101072682 - B4A SINE B4 -19 273 4 8 1001 34 65 0 0 chr4 54557443 54557505 -101072615 + AT_rich Low_complexity Low_complexity 1 62 0 8 1001 24 0 0 0 chr4 54557570 54557594 -101072526 + AT_rich Low_complexity Low_complexity 1 24 0 8 1001 640 267 58 55 chr4 54557611 54558140 -101071980 + L1MD1 LINE L1 5079 5608 -634 8 1001 224 305 17 17 chr4 54558140 54558200 -101071920 + B4A SINE B4 85 144 -148 8 1001 392 55 0 18 chr4 54558280 54558336 -101071784 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 8 1001 684 324 72 47 chr4 54558337 54558891 -101071229 + L1MD1 LINE L1 5606 6173 -69 8 1001 692 85 52 13 chr4 54559165 54559320 -101070800 + (TCTA)n Simple_repeat Simple_repeat 4 164 0 8 1001 218 92 50 50 chr4 54559342 54559422 -101070698 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 8 1001 785 49 16 24 chr4 54559427 54559552 -101070568 + (TCTCC)n Simple_repeat Simple_repeat 3 126 0 9 1001 226 286 82 12 chr4 54559646 54559731 -101070389 + MTEb LTR MaLR 289 379 0 7 1001 1479 158 123 65 chr4 54559852 54560266 -101069854 - Lx9 LINE L1 -1 7643 7206 9 1001 733 175 22 0 chr4 54560266 54560403 -101069717 + Lx9 LINE L1 7037 7176 -468 9 1001 531 276 71 71 chr4 54560679 54560822 -101069298 + ID_B1 SINE B4 4 147 -77 9 1001 1185 116 21 16 chr4 54560822 54561014 -101069106 + B2_Mm2 SINE B2 1 193 -2 9 1001 531 276 71 71 chr4 54561014 54561081 -101069039 + ID_B1 SINE B4 148 214 -10 9 1001 606 311 80 77 chr4 54561250 54561612 -101068508 - MLT2C1 LTR ERVL -17 380 18 9 1001 448 196 27 13 chr4 54562129 54562279 -101067841 - Lx9 LINE L1 -22 7622 7471 9 1001 405 39 0 0 chr4 54562294 54562345 -101067775 + (TATG)n Simple_repeat Simple_repeat 2 52 0 9 1001 263 289 0 0 chr4 54562538 54562614 -101067506 + Lx9 LINE L1 7107 7182 -462 9 1001 2634 146 66 14 chr4 54562633 54563133 -101066987 + RLTR11A LTR ERVK 1 526 -2 9 1001 254 329 50 44 chr4 54563173 54563332 -101066788 - RSINE1 SINE B4 -4 161 2 9 1001 600 14 0 0 chr4 54563730 54563799 -101066321 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1001 320 354 67 22 chr4 54563811 54563990 -101066130 + MIRb SINE MIR 24 210 -58 1 1001 442 316 86 26 chr4 54564144 54564378 -101065742 - RMER15 LTR ERVL -3 572 325 1 1001 410 348 134 47 chr4 54564578 54564922 -101065198 + MLT1J LTR MaLR 88 461 -51 1 1001 184 351 34 42 chr4 54565046 54565165 -101064955 + MIR3 SINE MIR 6 123 -85 1 1001 677 87 0 9 chr4 54565999 54566115 -101064005 + (TTTTG)n Simple_repeat Simple_repeat 5 119 0 1 1001 336 296 0 20 chr4 54566363 54566463 -101063657 - MER117 DNA MER1_type -99 98 1 1 1001 471 326 265 7 chr4 54566773 54567040 -101063080 + MER2 DNA MER2_type 8 344 -1 1 1001 256 179 14 69 chr4 54567194 54567266 -101062854 - MTD LTR MaLR -15 404 337 1 1001 322 290 37 37 chr4 54567352 54567488 -101062632 - L1M5 LINE L1 -567 5606 5471 1 1001 465 289 85 105 chr4 54567492 54567855 -101062265 + RLTR15 LTR ERVK 1 356 -3 1 1001 243 200 61 15 chr4 54569443 54569509 -101060611 + GA-rich Low_complexity Low_complexity 4 72 0 1 1001 580 310 124 30 chr4 54569636 54569902 -101060218 + B4A SINE B4 1 291 -1 1 1001 276 362 88 47 chr4 54570246 54570394 -101059726 + MIR SINE MIR 35 188 -74 1 1001 21 71 0 0 chr4 54570686 54570728 -101059392 + AT_rich Low_complexity Low_complexity 1 42 0 1 1001 27 29 0 0 chr4 54571207 54571241 -101058879 + AT_rich Low_complexity Low_complexity 1 34 0 1 1001 368 229 0 53 chr4 54571307 54571496 -101058624 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 1 1001 7326 75 42 4 chr4 54571496 54572491 -101057629 + RLTR13D4 LTR ERVK 1 1033 0 1 1001 235 265 20 13 chr4 54572491 54572610 -101057510 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 1001 554 310 135 51 chr4 54572790 54573242 -101056878 - MER82 DNA MER2_type -161 492 3 1 1001 371 292 56 66 chr4 54573281 54573479 -101056641 + B3A SINE B2 1 196 -2 1 1001 212 100 25 0 chr4 54573491 54573531 -101056589 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1001 370 34 33 17 chr4 54573531 54573591 -101056529 + (TTAG)n Simple_repeat Simple_repeat 3 63 0 1 1001 27 0 0 0 chr4 54574051 54574078 -101056042 + AT_rich Low_complexity Low_complexity 1 27 0 1 1001 28 0 0 0 chr4 54574300 54574328 -101055792 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 207 0 0 0 chr4 54574948 54574971 -101055149 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1001 215 31 31 0 chr4 54574976 54575008 -101055112 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1001 2653 27 9 0 chr4 54575008 54575338 -101054782 - L1Md_F3 LINE L1 -26 6558 6226 1 1001 881 37 0 0 chr4 54575338 54575447 -101054673 - B1_Mus2 SINE Alu -10 137 29 1 1001 24 32 0 0 chr4 54575523 54575554 -101054566 + AT_rich Low_complexity Low_complexity 1 31 0 1 1001 24 0 0 0 chr4 54575584 54575608 -101054512 + AT_rich Low_complexity Low_complexity 1 24 0 1 1001 186 167 0 0 chr4 54575777 54575813 -101054307 + CT-rich Low_complexity Low_complexity 5 40 0 1 1001 3828 172 39 35 chr4 54576225 54576967 -101053153 - L1_Mur3 LINE L1 -2492 3388 2645 1 1001 594 68 0 0 chr4 54576967 54577055 -101053065 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1001 3828 172 39 35 chr4 54577055 54577169 -101052951 - L1_Mur3 LINE L1 -3236 2644 2530 1 1001 467 301 38 14 chr4 54577165 54577374 -101052746 + Lx6 LINE L1 5892 6105 -1355 1 1001 342 0 0 0 chr4 54578528 54578566 -101051554 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1001 459 0 0 0 chr4 54578566 54578616 -101051504 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1001 429 95 0 0 chr4 54578720 54578783 -101051337 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1001 517 314 94 68 chr4 54578804 54579070 -101051050 - B4A SINE B4 -14 278 6 1 1001 640 297 76 68 chr4 54579102 54579401 -101050719 + L1MEg LINE L1 800 1099 -5143 1 1001 329 260 130 0 chr4 54579401 54579501 -101050619 + PB1D10 SINE Alu 5 117 0 1 1001 640 297 76 68 chr4 54579501 54579688 -101050432 + L1MEg LINE L1 1100 1289 -4953 1 1001 234 158 0 0 chr4 54579765 54579803 -101050317 + B4 SINE B4 4 41 -251 1 1001 1532 260 26 32 chr4 54579803 54580180 -101049940 + MTE2b LTR MaLR 1 375 -4 1 1001 230 244 12 0 chr4 54580436 54580518 -101049602 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1001 1264 264 47 74 chr4 54580539 54580711 -101049409 - Lx7 LINE L1 -1488 6208 6035 1 1001 3024 32 0 0 chr4 54580711 54581057 -101049063 + ORR1A0 LTR MaLR 1 346 0 1 1001 14199 52 6 2 chr4 54581057 54582842 -101047278 + ORR1A0-int LTR MaLR 1 1792 0 1 1001 3038 26 0 0 chr4 54582842 54583188 -101046932 + ORR1A0 LTR MaLR 1 346 0 1 1001 1264 264 47 74 chr4 54583188 54583651 -101046469 - Lx7 LINE L1 -1662 6034 5590 1 1001 2212 312 121 17 chr4 54583725 54584430 -101045690 + Lx8 LINE L1 6296 7067 -406 1 1001 261 0 0 0 chr4 54584430 54584459 -101045661 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1001 2212 312 121 17 chr4 54584459 54584817 -101045303 + Lx8 LINE L1 7068 7469 -4 1 1001 396 310 11 55 chr4 54584828 54585009 -101045111 + L1MEg LINE L1 1354 1526 -4716 1 1001 985 144 0 0 chr4 54585073 54585219 -101044901 + B1_Mus1 SINE Alu 3 148 0 1 1001 1158 122 0 0 chr4 54585229 54585409 -101044711 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1001 573 55 0 0 chr4 54585411 54585484 -101044636 + (GGAAA)n Simple_repeat Simple_repeat 3 75 0 1 1001 371 310 0 0 chr4 54585761 54585848 -101044272 + B3A SINE B2 77 163 -35 1 1001 342 0 0 0 chr4 54585855 54585893 -101044227 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1001 387 0 0 0 chr4 54585893 54585935 -101044185 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1001 1639 169 164 7 chr4 54586058 54586368 -101043752 - ORR1B2 LTR MaLR -8 359 1 1 1001 674 260 67 9 chr4 54586546 54586771 -101043349 + L1MA5 LINE L1 6063 6300 0 1 1001 357 24 0 0 chr4 54586802 54586844 -101043276 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1001 303 315 54 27 chr4 54586942 54587089 -101043031 + L1MEg LINE L1 2272 2422 -3744 1 1001 461 334 38 3 chr4 54587124 54587415 -101042705 + L1MEg LINE L1 2585 2885 -3261 1 1001 350 339 38 30 chr4 54587732 54587863 -101042257 + B1F SINE Alu 1 132 -17 1 1001 1344 63 0 0 chr4 54588173 54588348 -101041772 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1 1001 483 296 39 26 chr4 54588358 54588514 -101041606 + RSINE1 SINE B4 8 165 0 1 1001 516 275 77 12 chr4 54588642 54588889 -101041231 + L1MEg LINE L1 3601 3863 -2283 1 1001 439 350 150 15 chr4 54589149 54589555 -101040565 + L1MEg LINE L1 4823 5283 -863 1 1001 1202 269 93 14 chr4 54589758 54590123 -101039997 - MTD LTR MaLR -14 405 12 1 1001 395 282 163 9 chr4 54590140 54590490 -101039630 + L1MA9 LINE L1 3712 4115 -2025 1 1001 4381 178 63 17 chr4 54590749 54591612 -101038508 - RMER19B LTR ERVK 0 902 1 1 1001 1388 323 84 37 chr4 54591748 54592444 -101037676 + MTE-int LTR MaLR 962 1578 -2 1 1001 475 238 72 78 chr4 54592540 54592827 -101037293 + L1MA9 LINE L1 4110 4397 -1743 1 1001 1811 149 15 18 chr4 54592827 54593154 -101036966 - ORR1A4 LTR MaLR -3 326 1 1 1001 475 238 72 78 chr4 54593154 54593199 -101036921 + L1MA9 LINE L1 4398 4440 -1700 1 1001 316 261 14 0 chr4 54593202 54593271 -101036849 + B3 SINE B2 133 202 -14 1 1001 1496 159 55 82 chr4 54593275 54593627 -101036493 + ORR1B1 LTR MaLR 39 384 0 1 1001 821 196 0 0 chr4 54593642 54593780 -101036340 + B1_Mus1 SINE Alu 1 138 -10 1 1001 423 0 0 0 chr4 54593780 54593827 -101036293 + (GGA)n Simple_repeat Simple_repeat 2 48 0 1 1001 605 221 31 26 chr4 54593827 54594018 -101036102 + L1MA9 LINE L1 4471 4662 -1478 1 1001 183 129 0 0 chr4 54594188 54594219 -101035901 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 1001 649 222 22 53 chr4 54594443 54594671 -101035449 + L1MA9 LINE L1 4651 4871 -1269 1 1001 256 273 15 0 chr4 54594819 54594885 -101035235 + L1MA9 LINE L1 4832 4898 -1242 1 1001 270 0 0 0 chr4 54594886 54594916 -101035204 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 1001 207 0 0 0 chr4 54594916 54594939 -101035181 + (TGG)n Simple_repeat Simple_repeat 3 25 0 1 1001 301 243 101 14 chr4 54594946 54595084 -101035036 + L1MA9 LINE L1 4895 5044 -1096 1 1001 721 294 131 22 chr4 54595150 54595494 -101034626 + MTD LTR MaLR 3 379 0 1 1001 371 236 101 53 chr4 54595510 54595842 -101034278 + L1MA9 LINE L1 5118 5474 -817 1 1001 387 60 0 0 chr4 54595867 54595917 -101034203 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1001 528 16 0 0 chr4 54595917 54595978 -101034142 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1001 1463 282 108 25 chr4 54596003 54596709 -101033411 + L1MA9 LINE L1 5546 6309 -3 1 1001 1038 276 60 4 chr4 54597412 54597681 -101032439 + B4A SINE B4 5 288 -4 1 1001 303 49 0 0 chr4 54597698 54597739 -101032381 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 1001 386 304 114 55 chr4 54598208 54598319 -101031801 + L1MB5 LINE L1 5906 6033 -141 1 1001 410 276 159 65 chr4 54598319 54598672 -101031448 + MLT1B LTR MaLR 3 388 -2 1 1001 386 304 114 55 chr4 54598672 54598814 -101031306 + L1MB5 LINE L1 6034 6174 0 1 1001 1409 44 8 8 chr4 54599641 54599891 -101030229 + (TTCC)n Simple_repeat Simple_repeat 1 250 0 1 1001 277 315 117 61 chr4 54600670 54600917 -101029203 - MIRb SINE MIR -2 266 6 1 1001 499 74 0 24 chr4 54601117 54601200 -101028920 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1001 735 284 86 41 chr4 54601225 54601493 -101028627 - B4A SINE B4 -11 281 2 1 1001 190 376 45 9 chr4 54601509 54601619 -101028501 + L2b LINE L2 3257 3370 -5 1 1001 440 321 47 8 chr4 54602240 54602484 -101027636 + L1MA4A LINE L1 5629 5915 -388 1 1001 22 99 0 0 chr4 54602839 54602910 -101027210 + AT_rich Low_complexity Low_complexity 1 71 0 1 1001 576 0 0 0 chr4 54603003 54603067 -101027053 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1001 504 0 0 0 chr4 54604053 54604109 -101026011 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1001 909 213 48 24 chr4 54605263 54605470 -101024650 + B3 SINE B2 1 212 -4 1 1001 8321 72 11 5 chr4 54605508 54607437 -101022683 + L1_Mus1 LINE L1 4635 6567 0 1 1001 539 275 78 21 chr4 54607732 54607873 -101022247 + B1_Mur1 SINE Alu 1 149 0 1 1001 2628 243 102 53 chr4 54607948 54608799 -101021321 + RMER19B LTR ERVK 3 895 -7 1 1001 643 236 131 0 chr4 54609719 54609918 -101020202 + URR1B DNA MER1_type 1 225 0 1 1001 220 340 74 34 chr4 54610359 54610508 -101019612 + MIRb SINE MIR 87 241 -27 1 1001 8181 34 1 1 chr4 54611291 54612901 -101017219 - L1Md_F2 LINE L1 0 6582 4974 1 1001 201 39 0 0 chr4 54612945 54612971 -101017149 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1001 783 250 18 45 chr4 54613228 54613450 -101016670 + B3 SINE B2 1 216 0 1 1001 332 250 100 0 chr4 54613549 54613649 -101016471 - B3 SINE B2 0 216 107 1 1001 1570 288 77 22 chr4 54613657 54614335 -101015785 + L1MB3 LINE L1 5442 6156 -27 1 1001 225 319 34 50 chr4 54615833 54615952 -101014168 - MIRb SINE MIR -139 129 13 1 1001 675 0 0 0 chr4 54616268 54616343 -101013777 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1001 245 355 92 34 chr4 54616975 54617267 -101012853 + L1MEd LINE L1 87 395 -5724 2 1001 369 0 0 0 chr4 54617297 54617338 -101012782 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1001 33 43 0 0 chr4 54617352 54617399 -101012721 + AT_rich Low_complexity Low_complexity 1 47 0 2 1001 224 30 30 0 chr4 54617474 54617507 -101012613 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1001 277 326 22 0 chr4 54617624 54617713 -101012407 - Lx7 LINE L1 -400 7296 7206 2 1001 7226 205 60 13 chr4 54617807 54619557 -101010563 - Lx6 LINE L1 -169 7291 5460 2 1001 320 246 98 8 chr4 54619891 54620014 -101010106 + L1MEd LINE L1 822 955 -5164 2 1001 216 185 0 0 chr4 54620290 54620344 -101009776 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1001 823 213 0 0 chr4 54621291 54621441 -101008679 + B1_Mur4 SINE Alu 1 150 0 2 1001 207 0 0 0 chr4 54621578 54621601 -101008519 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1001 687 301 113 11 chr4 54621711 54621976 -101008144 + Lx8 LINE L1 7180 7471 -2 2 1001 786 264 35 0 chr4 54622005 54622202 -101007918 + B3 SINE B2 7 210 -6 2 1001 378 349 10 20 chr4 54623410 54623609 -101006511 + MIR SINE MIR 5 201 -61 2 1001 563 0 15 0 chr4 54623799 54623866 -101006254 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 2 1001 355 94 0 0 chr4 54623872 54623925 -101006195 + B1_Mus1 SINE Alu 1 53 -95 2 1001 649 174 0 0 chr4 54623923 54624038 -101006082 - B1_Mus1 SINE Alu -33 115 1 2 1001 615 27 0 0 chr4 54626466 54626539 -101003581 + (TATG)n Simple_repeat Simple_repeat 2 74 0 2 1001 1207 200 99 30 chr4 54627079 54627383 -101002737 + ORR1C1 LTR MaLR 1 325 -53 2 1001 22 0 0 0 chr4 54627403 54627425 -101002695 + AT_rich Low_complexity Low_complexity 1 22 0 2 1001 459 194 35 35 chr4 54629170 54629341 -101000779 + CT-rich Low_complexity Low_complexity 5 175 0 2 1001 5487 207 123 42 chr4 54629382 54630774 -100999346 - Lx9 LINE L1 -1 7643 6154 2 1001 468 0 0 0 chr4 54630774 54630826 -100999294 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1001 5487 282 100 47 chr4 54630826 54631092 -100999028 - Lx9 LINE L1 -1491 6153 5776 2 1001 316 374 57 0 chr4 54631102 54631225 -100998895 - ID_B1 SINE B4 -5 219 90 2 1001 544 250 0 0 chr4 54632777 54632897 -100997223 + PB1D9 SINE Alu 1 120 0 2 1001 294 95 0 0 chr4 54633248 54633290 -100996830 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2 1001 377 270 18 18 chr4 54633402 54633515 -100996605 + PB1D7 SINE Alu 1 113 -7 2 1001 619 362 100 31 chr4 54634518 54634966 -100995154 - MLT1F2 LTR MaLR -33 527 49 2 1001 1037 72 0 0 chr4 54634977 54635116 -100995004 + B1_Mus1 SINE Alu 10 148 0 2 1001 1333 177 35 214 chr4 54635369 54635822 -100994298 + ORR1D1 LTR MaLR 1 372 -2 2 1001 540 0 0 0 chr4 54636219 54636279 -100993841 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1001 263 204 0 0 chr4 54636285 54636339 -100993781 - MLT1F1 LTR MaLR -438 131 78 2 1001 211 306 23 34 chr4 54637210 54637298 -100992822 - L2c LINE L2 -28 3359 3273 2 1001 1242 86 3 3 chr4 54639046 54639349 -100990771 + (TAGA)n Simple_repeat Simple_repeat 1 303 0 2 1001 208 333 14 0 chr4 54639360 54639429 -100990691 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 2 1001 38910 42 0 4 chr4 54639551 54646027 -100984093 - L1Md_T LINE L1 0 6585 38 2 1001 180 286 51 25 chr4 54646641 54646720 -100983400 + MIRb SINE MIR 107 187 -81 2 1001 751 98 8 8 chr4 54647365 54647489 -100982631 + (TC)n Simple_repeat Simple_repeat 1 124 0 2 1001 186 281 146 0 chr4 54649158 54649247 -100980873 + L3 LINE CR1 2098 2199 -2290 2 1001 336 302 143 54 chr4 54650458 54650661 -100979459 - MIRb SINE MIR 0 262 42 2 1001 1137 72 0 0 chr4 54651603 54651742 -100978378 + B1_Mm SINE Alu 1 139 -8 2 1001 22 0 0 0 chr4 54652084 54652106 -100978014 + AT_rich Low_complexity Low_complexity 1 22 0 2 1001 1422 182 134 21 chr4 54652801 54652965 -100977155 - ORR1D1 LTR MaLR 0 374 197 2 1001 1179 35 0 0 chr4 54652965 54653109 -100977011 + (GA)n Simple_repeat Simple_repeat 1 144 0 2 1001 1422 182 134 21 chr4 54653109 54653280 -100976840 - ORR1D1 LTR MaLR -178 196 1 2 1001 21 36 0 0 chr4 54653535 54653563 -100976557 + AT_rich Low_complexity Low_complexity 1 28 0 2 1001 625 239 83 28 chr4 54653563 54653744 -100976376 + B3A SINE B2 1 191 -7 2 1001 631 311 66 63 chr4 54654484 54654834 -100975286 + ORR1E LTR MaLR 3 353 -6 2 1001 516 348 118 43 chr4 54655616 54656104 -100974016 + MLT2F LTR ERVL 19 545 -118 2 1001 296 282 176 28 chr4 54656104 54656286 -100973834 + MER58A DNA MER1_type 1 209 -15 2 1002 228 143 0 0 chr4 54657515 54657557 -100972563 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1002 211 264 42 0 chr4 54657753 54657825 -100972295 - MIR SINE MIR -111 151 77 2 1002 218 209 153 71 chr4 54658080 54658178 -100971942 - MIR3 SINE MIR -19 189 84 2 1002 260 205 38 13 chr4 54658277 54658356 -100971764 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 2 1002 531 0 0 0 chr4 54660052 54660111 -100970009 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1002 227 173 19 19 chr4 54660877 54660930 -100969190 + L2c LINE L2 3107 3159 -228 2 1002 181 286 20 0 chr4 54661018 54661067 -100969053 + L2c LINE L2 3268 3317 -70 2 1002 268 273 18 12 chr4 54661451 54661618 -100968502 + GA-rich Low_complexity Low_complexity 2 169 0 2 1002 201 232 17 35 chr4 54661639 54661697 -100968423 + GA-rich Low_complexity Low_complexity 2 58 0 2 1002 5039 44 0 0 chr4 54662280 54662876 -100967244 + L1Md_F2 LINE L1 5987 6582 0 2 1002 185 333 0 0 chr4 54663039 54663096 -100967024 + MIR SINE MIR 92 148 -114 2 1002 525 302 0 61 chr4 54663291 54663439 -100966681 + B1F SINE Alu 3 141 -8 2 1002 618 232 179 0 chr4 54663577 54663745 -100966375 - B3A SINE B2 0 198 1 2 1002 444 353 43 5 chr4 54664222 54664410 -100965710 + LTR82A LTR ERVL 435 629 -243 2 1002 846 38 0 0 chr4 54664430 54664536 -100965584 + (CTTG)n Simple_repeat Simple_repeat 2 107 0 2 1002 263 298 46 66 chr4 54666934 54667085 -100963035 + L2a LINE L2 3278 3425 -1 2 1002 717 246 128 5 chr4 54667912 54668108 -100962012 + ID_B1 SINE B4 2 221 -3 2 1002 36282 49 0 4 chr4 54668283 54673943 -100956177 + L1Md_T LINE L1 1 5589 -297 2 1002 9060 30 0 0 chr4 54673943 54674939 -100955181 + L1Md_T LINE L1 5590 6585 0 2 1002 503 276 84 40 chr4 54675602 54675851 -100954269 - MER33 DNA MER1_type -64 260 1 2 1002 2190 153 58 3 chr4 54675854 54676202 -100953918 - ORR1B2 LTR MaLR 0 367 1 2 1002 1459 200 39 33 chr4 54676468 54676799 -100953321 + Lx2B LINE L1 6667 6999 -1 2 1002 637 270 89 11 chr4 54676913 54677093 -100953027 - B3A SINE B2 -4 194 1 2 1002 196 281 133 11 chr4 54678643 54678733 -100951387 + MIRc SINE MIR 54 154 -114 2 1002 256 265 70 20 chr4 54680133 54680233 -100949887 + MIR SINE MIR 130 234 -28 2 1002 391 339 119 73 chr4 54680576 54680837 -100949283 + B4A SINE B4 2 274 -18 2 1002 614 345 33 36 chr4 54680934 54681208 -100948912 + MLT1A0 LTR MaLR 48 320 -45 2 1002 185 250 30 30 chr4 54681353 54681419 -100948701 + L3 LINE CR1 61 126 -4363 2 1002 212 330 176 34 chr4 54681540 54681744 -100948376 + MIRb SINE MIR 13 245 -23 2 1002 245 304 122 61 chr4 54681967 54682276 -100947844 + L2c LINE L2 2995 3332 -94 2 1002 222 62 0 0 chr4 54682464 54682496 -100947624 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1002 39037 46 0 3 chr4 54683064 54689756 -100940364 - L1Md_T LINE L1 0 6585 1 2 1002 1965 324 49 74 chr4 54690215 54690548 -100939572 + Lx5 LINE L1 5590 5881 -1169 2 1002 441 0 0 0 chr4 54690548 54690597 -100939523 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1002 1965 324 53 79 chr4 54690597 54691789 -100938331 + Lx5 LINE L1 5882 7050 0 2 1002 327 49 0 0 chr4 54692179 54692220 -100937900 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 2 1002 1281 270 25 36 chr4 54692536 54692897 -100937223 + ORR1D2 LTR MaLR 7 363 -7 2 1002 14958 152 8 4 chr4 54693237 54693286 -100936834 + Lx LINE L1 3427 3475 -2408 2 1002 360 0 0 0 chr4 54693286 54693326 -100936794 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2 1002 14958 139 9 5 chr4 54693326 54696178 -100933942 + Lx LINE L1 3476 6340 -314 2 1002 387 0 0 0 chr4 54696178 54696221 -100933899 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1002 7479 104 11 10 chr4 54696221 54696533 -100933587 + Lx LINE L1 6341 6652 -2 2 1002 572 324 5 11 chr4 54697589 54697776 -100932344 - RMER15 LTR ERVL -72 503 318 2 1002 306 254 40 95 chr4 54697802 54697928 -100932192 - RMER15 LTR ERVL -416 159 41 2 1002 772 264 73 101 chr4 54697962 54698139 -100931981 + L1MB5 LINE L1 5718 5908 -266 2 1002 999 241 21 220 chr4 54698139 54698306 -100931814 + MTE2a LTR MaLR 1 158 -221 2 1002 833 186 14 0 chr4 54698306 54698451 -100931669 + B1_Mm SINE Alu 1 147 0 2 1002 999 241 21 220 chr4 54698451 54698756 -100931364 + MTE2a LTR MaLR 159 379 0 2 1002 772 264 73 101 chr4 54698756 54699042 -100931078 + L1MB5 LINE L1 5909 6168 -6 2 1002 195 184 0 0 chr4 54699893 54699931 -100930189 + CT-rich Low_complexity Low_complexity 1 38 0 2 1002 472 273 82 0 chr4 54700095 54700205 -100929915 + ID_B1 SINE B4 87 205 -19 2 1002 244 270 0 39 chr4 54700243 54700320 -100929800 + MTEb LTR MaLR 293 366 -13 2 1002 345 47 0 0 chr4 54700378 54700421 -100929699 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2 1002 242 273 13 25 chr4 54702526 54702605 -100927515 - L2b LINE L2 0 3375 3298 2 1002 561 15 0 0 chr4 54703163 54703229 -100926891 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1002 286 260 189 19 chr4 54703276 54703382 -100926738 - Tigger7 DNA MER2_type -37 2454 2331 2 1002 423 290 60 40 chr4 54703444 54703645 -100926475 - Tigger7 DNA MER2_type -2054 437 233 2 1002 632 164 8 0 chr4 54704027 54704161 -100925959 + GA-rich Low_complexity Low_complexity 4 138 0 2 1002 319 385 52 64 chr4 54704203 54704781 -100925339 + L1ME2 LINE L1 801 1371 -5044 2 1002 234 191 0 0 chr4 54704846 54704893 -100925227 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1002 1009 105 13 65 chr4 54705038 54705191 -100924929 - B1_Mur4 SINE Alu -1 149 5 2 1002 342 0 0 0 chr4 54705250 54705288 -100924832 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1002 451 288 67 73 chr4 54705298 54705628 -100924492 + L1ME2 LINE L1 1683 2010 -4405 2 1002 327 305 88 22 chr4 54705776 54706041 -100924079 + L1ME2 LINE L1 2262 2535 -3784 2 1002 363 351 67 33 chr4 54706132 54706492 -100923628 + L1ME2 LINE L1 2691 3062 -3257 2 1002 665 262 24 6 chr4 54706497 54706666 -100923454 + ID_B1 SINE B4 18 189 -35 3 1002 1880 169 102 8 chr4 54706669 54707032 -100923088 + MTC LTR MaLR 1 397 -24 3 1002 293 284 72 46 chr4 54707071 54707325 -100922795 + L1ME2 LINE L1 3052 3315 -3004 2 1002 2523 128 92 0 chr4 54707325 54707685 -100922435 + Lx4A LINE L1 6665 7057 -1 3 1002 293 284 72 46 chr4 54707685 54707736 -100922384 + L1ME2 LINE L1 3316 3365 -2954 2 1002 272 278 52 51 chr4 54708001 54708183 -100921937 + L1ME2 LINE L1 5298 5480 -839 2 1002 294 355 287 4 chr4 54708324 54708572 -100921548 - LTR16B1 LTR ERVL -161 319 1 3 1002 38983 10 1 7 chr4 54708601 54713810 -100916310 + L1Md_A LINE L1 413 5586 -297 3 1002 9521 8 0 0 chr4 54713810 54714806 -100915314 + L1Md_A LINE L1 5587 6582 0 3 1002 654 13 0 0 chr4 54714853 54714928 -100915192 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 1002 1241 68 0 7 chr4 54715038 54715185 -100914935 + B1_Mus2 SINE Alu 1 146 -1 3 1002 608 300 125 77 chr4 54715333 54715388 -100914732 + L1ME2 LINE L1 5813 5858 -479 2 1002 1053 204 44 0 chr4 54715388 54715594 -100914526 + B3 SINE B2 2 216 0 3 1002 608 300 125 77 chr4 54715594 54715939 -100914181 + L1ME2 LINE L1 5859 6232 -105 2 1002 237 411 131 33 chr4 54716427 54716641 -100913479 - MamGypLTR2 LTR Gypsy -409 780 546 3 1002 512 250 221 43 chr4 54716890 54717053 -100913067 - B3A SINE B2 -2 196 5 3 1002 588 339 39 15 chr4 54718369 54718704 -100911416 - L1ME3B LINE L1 -317 5923 5581 3 1002 231 88 0 0 chr4 54719341 54719375 -100910745 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 3 1002 1100 111 0 6 chr4 54719375 54719547 -100910573 + (GGAA)n Simple_repeat Simple_repeat 2 172 0 3 1002 1222 26 13 0 chr4 54719548 54719702 -100910418 + (GGAGA)n Simple_repeat Simple_repeat 2 157 0 3 1002 356 40 20 0 chr4 54719702 54719752 -100910368 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 3 1002 311 323 23 39 chr4 54720103 54720232 -100909888 - L1MC4 LINE L1 -25 8017 7891 3 1002 328 371 64 32 chr4 54720523 54720804 -100909316 - B4A SINE B4 -2 290 1 3 1002 357 24 0 0 chr4 54721416 54721458 -100908662 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1002 574 315 106 19 chr4 54722160 54722255 -100907865 + B4A SINE B4 3 99 -193 3 1002 450 0 0 0 chr4 54722255 54722305 -100907815 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1002 574 315 106 19 chr4 54722305 54722474 -100907646 + B4A SINE B4 100 290 -2 3 1002 283 127 32 0 chr4 54722477 54722540 -100907580 + GA-rich Low_complexity Low_complexity 2 66 0 3 1002 186 339 149 39 chr4 54722782 54723291 -100906829 + L2 LINE L2 2279 2843 -576 3 1002 944 280 33 4 chr4 54723495 54723735 -100906385 + 7SK RNA RNA 1 247 -84 3 1002 1228 262 85 14 chr4 54724084 54724436 -100905684 + MTE2b LTR MaLR 1 377 -2 3 1002 216 0 0 0 chr4 54724672 54724696 -100905424 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1002 1048 150 129 5 chr4 54725602 54725803 -100904317 - URR1A DNA MER1_type 0 226 1 3 1002 638 293 137 41 chr4 54725922 54726264 -100903856 + MLT1I LTR MaLR 37 411 0 3 1002 446 273 50 31 chr4 54726584 54726743 -100903377 + RSINE1 SINE B4 3 164 -1 3 1002 184 324 45 99 chr4 54727940 54728142 -100901978 + L2b LINE L2 2934 3124 -251 3 1002 30 0 0 0 chr4 54728425 54728455 -100901665 + AT_rich Low_complexity Low_complexity 1 30 0 3 1002 591 268 40 30 chr4 54728495 54728695 -100901425 - B3 SINE B2 -13 203 2 3 1002 24 32 0 0 chr4 54728707 54728738 -100901382 + AT_rich Low_complexity Low_complexity 1 31 0 3 1002 219 247 91 0 chr4 54729395 54729472 -100900648 - L2a LINE L2 0 3426 3343 3 1002 546 259 30 0 chr4 54730010 54730141 -100899979 - RSINE1 SINE B4 -27 138 4 3 1002 357 289 88 0 chr4 54731403 54731517 -100898603 + MER58B DNA MER1_type 217 340 -1 3 1002 567 0 0 0 chr4 54731693 54731756 -100898364 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1002 271 309 105 60 chr4 54732022 54732222 -100897898 + MLT1K LTR MaLR 369 577 -18 3 1002 291 314 39 0 chr4 54732711 54732813 -100897307 - L1MC4 LINE L1 -7 8035 7930 3 1002 594 264 42 0 chr4 54732944 54733088 -100897032 + B3A SINE B2 3 152 -46 3 1002 354 45 0 0 chr4 54733101 54733145 -100896975 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1002 1077 16 0 0 chr4 54733174 54733301 -100896819 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 3 1002 300 137 0 0 chr4 54733302 54733353 -100896767 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 3 1002 251 355 43 0 chr4 54735036 54735129 -100894991 - MIRc SINE MIR -128 140 44 3 1002 297 267 48 48 chr4 54735484 54735610 -100894510 + L2c LINE L2 3261 3386 -1 3 1002 519 289 55 30 chr4 54735847 54736047 -100894073 - ID_B1 SINE B4 -15 209 5 3 1002 240 35 0 0 chr4 54736137 54736166 -100893954 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1002 1138 197 9 9 chr4 54737275 54737500 -100892620 - URR1B DNA MER1_type 0 225 1 3 1002 1720 132 10 65 chr4 54737657 54737965 -100892155 - ORR1A3 LTR MaLR -35 291 1 3 1002 10460 134 45 91 chr4 54737965 54740021 -100890099 - ORR1A3-int LTR MaLR 0 1963 1 3 1002 1929 126 0 62 chr4 54740025 54740364 -100889756 - ORR1A3 LTR MaLR -8 318 1 3 1002 483 279 94 34 chr4 54740386 54740653 -100889467 + Lx7 LINE L1 5614 5896 -1800 3 1002 188 86 29 0 chr4 54740668 54740703 -100889417 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1002 450 0 0 0 chr4 54740703 54740753 -100889367 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1002 2265 155 152 32 chr4 54740760 54741259 -100888861 + RMER4B LTR ERVK 17 575 -10 3 1002 249 83 0 0 chr4 54741275 54741311 -100888809 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1002 335 267 57 0 chr4 54742476 54742581 -100887539 + MER94 DNA AcHobo 24 134 0 3 1002 486 122 0 0 chr4 54742650 54742748 -100887372 + (TG)n Simple_repeat Simple_repeat 2 99 0 3 1002 212 103 0 49 chr4 54744571 54744612 -100885508 + T-rich Low_complexity Low_complexity 2 40 0 3 1002 252 0 0 0 chr4 54744787 54744815 -100885305 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1002 180 0 0 0 chr4 54744815 54744835 -100885285 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1002 1366 254 65 3 chr4 54745573 54745928 -100884192 + MTE2b LTR MaLR 1 377 -2 3 1002 756 226 14 93 chr4 54748003 54748218 -100881902 - B3A SINE B2 0 198 1 3 1002 1050 182 6 0 chr4 54748371 54748547 -100881573 - Lx5 LINE L1 -347 6703 6527 3 1002 1520 136 72 0 chr4 54748542 54748777 -100881343 + Lx5 LINE L1 6258 6509 -541 3 1002 1769 212 76 32 chr4 54748770 54749179 -100880941 - Lx7 LINE L1 -421 7275 6849 3 1002 1807 116 21 69 chr4 54749603 54749937 -100880183 + ORR1A3 LTR MaLR 1 318 -8 3 1002 181 325 161 8 chr4 54750191 54750315 -100879805 - L2b LINE L2 0 3375 3233 3 1002 305 338 0 53 chr4 54750516 54750685 -100879435 + MLT1B LTR MaLR 1 160 -230 3 1002 678 289 120 24 chr4 54751324 54751658 -100878462 + MLT2B1 LTR ERVL 5 457 -105 3 1002 1115 96 6 0 chr4 54751674 54751841 -100878279 + (TC)n Simple_repeat Simple_repeat 1 168 0 3 1002 507 231 43 191 chr4 54752500 54752709 -100877411 + B3A SINE B2 14 191 -4 3 1002 30 27 0 0 chr4 54753585 54753622 -100876498 + AT_rich Low_complexity Low_complexity 1 37 0 3 1002 304 254 0 0 chr4 54753898 54753961 -100876159 + ID4_ SINE ID 2 64 -19 3 1002 450 320 75 65 chr4 54754791 54754987 -100875133 - Lx7 LINE L1 -1541 6103 5930 3 1002 651 26 0 0 chr4 54754987 54755064 -100875056 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1002 703 312 44 7 chr4 54755064 54755362 -100874758 - Lx7 LINE L1 -1715 5929 5604 3 1002 781 256 20 31 chr4 54755606 54755830 -100874290 + B3A SINE B2 1 216 0 3 1002 1399 216 78 40 chr4 54756025 54756372 -100873748 - Lx8 LINE L1 -326 7147 6788 3 1002 515 16 16 0 chr4 54756828 54756892 -100873228 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1002 206 56 89 36 chr4 54757432 54757488 -100872632 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 1002 380 331 30 18 chr4 54757557 54757726 -100872394 - MIR SINE MIR -27 235 65 3 1002 417 350 29 29 chr4 54757901 54758107 -100872013 - B4A SINE B4 -56 236 31 3 1002 408 326 32 82 chr4 54759268 54759598 -100870522 + B4 SINE B4 1 274 -18 3 1002 291 329 63 99 chr4 54760304 54760959 -100869161 + L1MC4 LINE L1 6898 7528 -514 3 1002 470 300 80 88 chr4 54760959 54761321 -100868799 + ORR1E LTR MaLR 1 359 0 3 1002 237 65 0 0 chr4 54761408 54761439 -100868681 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 3 1002 270 297 0 0 chr4 54761448 54761522 -100868598 + PB1D10 SINE Alu 42 115 -2 3 1002 258 81 0 0 chr4 54761608 54761645 -100868475 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1002 1407 56 0 0 chr4 54761645 54761933 -100868187 + (CA)n Simple_repeat Simple_repeat 1 288 0 3 1002 819 286 98 15 chr4 54762016 54762338 -100867782 - ORR1E LTR MaLR 0 359 13 3 1002 241 216 97 10 chr4 54762468 54762571 -100867549 - Lx7 LINE L1 0 7696 7585 3 1002 844 254 19 5 chr4 54762770 54762980 -100867140 - B3 SINE B2 -3 213 1 3 1002 1018 230 54 113 chr4 54764326 54764698 -100865422 - MTE2a LTR MaLR -29 350 1 3 1002 366 85 0 0 chr4 54765113 54765172 -100864948 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1002 252 0 0 0 chr4 54765177 54765205 -100864915 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1002 507 268 24 0 chr4 54765581 54765708 -100864412 + RSINE1 SINE B4 3 132 -33 3 1002 347 321 49 25 chr4 54766002 54766165 -100863955 + Charlie4a DNA MER1_type 321 487 -21 3 1002 4411 37 0 0 chr4 54767911 54768424 -100861696 + L1Md_T LINE L1 6070 6582 0 3 1002 34 0 0 0 chr4 54768438 54768472 -100861648 + AT_rich Low_complexity Low_complexity 1 34 0 3 1002 300 175 148 46 chr4 54769242 54769258 -100860862 + B1F1 SINE Alu 1 119 -30 3 1002 301 156 141 22 chr4 54769258 54769350 -100860770 + ID_B1 SINE B4 95 197 -27 3 1002 192 228 0 0 chr4 54769359 54769416 -100860704 + G-rich Low_complexity Low_complexity 5 61 0 3 1002 393 284 53 20 chr4 54769517 54769668 -100860452 + RSINE1 SINE B4 2 157 -8 3 1002 209 109 65 0 chr4 54769752 54769798 -100860322 + T-rich Low_complexity Low_complexity 3 51 0 3 1002 1149 68 0 0 chr4 54769798 54769944 -100860176 - B1_Mm SINE Alu 0 147 2 4 1002 313 279 38 0 chr4 54769948 54770027 -100860093 + MIRm SINE MIR 89 170 -106 4 1002 180 152 0 0 chr4 54770162 54770195 -100859925 + (CAT)n Simple_repeat Simple_repeat 3 35 0 4 1002 189 94 0 0 chr4 54771666 54771698 -100858422 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1002 349 286 125 33 chr4 54772197 54772381 -100857739 - RMER30 DNA MER1_type 0 202 2 4 1002 286 355 10 41 chr4 54772387 54772484 -100857636 + PB1D10 SINE Alu 24 117 0 4 1002 381 103 0 0 chr4 54772711 54772779 -100857341 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1002 767 237 14 43 chr4 54772786 54772993 -100857127 - Lx8 LINE L1 -153 7320 7120 4 1002 32 0 0 0 chr4 54773397 54773429 -100856691 + AT_rich Low_complexity Low_complexity 1 32 0 4 1002 221 273 58 39 chr4 54773784 54773887 -100856233 + MIRb SINE MIR 120 224 -44 4 1002 582 355 15 0 chr4 54775739 54775936 -100854184 + ID_B1 SINE B4 16 215 -9 4 1002 226 208 0 0 chr4 54776754 54776802 -100853318 + L1MA5A LINE L1 6245 6292 -5 4 1002 804 237 79 20 chr4 54776867 54777069 -100853051 - ID_B1 SINE B4 -9 215 2 4 1002 439 236 18 0 chr4 54778636 54778801 -100851319 + (GTATG)n Simple_repeat Simple_repeat 2 169 0 4 1002 348 345 103 41 chr4 54779308 54779647 -100850473 + MLT1A0 LTR MaLR 6 365 0 4 1002 354 260 97 52 chr4 54780517 54780671 -100849449 - L3b LINE CR1 -146 336 176 4 1002 1065 83 0 32 chr4 54780791 54780977 -100849143 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1002 389 274 97 32 chr4 54782501 54782766 -100847354 - RSINE1 SINE B4 -6 286 1 4 1002 992 248 19 0 chr4 54783042 54783248 -100846872 + B3 SINE B2 1 210 -6 4 1002 24 53 0 0 chr4 54783683 54783721 -100846399 + AT_rich Low_complexity Low_complexity 1 38 0 4 1002 258 136 0 0 chr4 54783890 54783934 -100846186 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1002 780 210 0 20 chr4 54783963 54784109 -100846011 - B1_Mur2 SINE Alu -1 148 6 4 1002 390 326 43 29 chr4 54784123 54784262 -100845858 - B1F1 SINE Alu -7 142 2 4 1002 234 305 31 31 chr4 54785101 54785199 -100844921 - MIR3 SINE MIR -97 111 14 4 1002 192 360 33 58 chr4 54787059 54787180 -100842940 + L2b LINE L2 3240 3357 -18 4 1002 1361 140 0 28 chr4 54787298 54787511 -100842609 - URR1A DNA MER1_type -19 207 1 4 1002 259 300 0 72 chr4 54787939 54788036 -100842084 - MIR SINE MIR -133 129 40 4 125 282 307 11 0 chr4 54788050 54788138 -100841982 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1003 474 333 57 14 chr4 54788450 54788660 -100841460 - MIR SINE MIR 0 262 44 4 1003 293 224 0 0 chr4 54789007 54789065 -100841055 + ID4 SINE ID 10 67 -16 4 1003 257 271 14 14 chr4 54789065 54789078 -100841042 + ID SINE ID 10 80 -144 4 1003 531 66 0 0 chr4 54789126 54789202 -100840918 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1003 345 259 324 0 chr4 54789202 54789310 -100840810 + B1_Mur1 SINE Alu 2 144 -5 4 1003 480 139 0 0 chr4 54789460 54789539 -100840581 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1003 195 42 0 0 chr4 54790284 54790308 -100839812 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 4 1003 286 307 13 0 chr4 54790309 54790384 -100839736 - ID4 SINE ID -7 76 1 4 1003 618 126 0 0 chr4 54790826 54790929 -100839191 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1003 625 229 97 28 chr4 54790929 54791073 -100839047 - B3A SINE B2 -44 154 1 4 1003 213 280 183 46 chr4 54791191 54791322 -100838798 + MIR SINE MIR 1 149 -113 4 1003 759 278 0 0 chr4 54791324 54791475 -100838645 + B3A SINE B2 1 151 -47 4 1003 846 79 5 53 chr4 54791485 54791673 -100838447 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1003 2985 220 47 14 chr4 54791852 54792570 -100837550 + Lx9 LINE L1 6903 7644 0 4 1003 303 253 24 12 chr4 54792649 54792733 -100837387 + B4A SINE B4 190 274 -18 4 1003 741 79 0 0 chr4 54792796 54792897 -100837223 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 4 1003 21 71 0 0 chr4 54792956 54792998 -100837122 + AT_rich Low_complexity Low_complexity 1 42 0 4 1003 931 169 7 13 chr4 54793006 54793156 -100836964 - B1_Mur3 SINE Alu 0 149 1 4 1003 727 204 99 0 chr4 54793157 54793309 -100836811 - Lx9 LINE L1 -1 7643 7484 4 1003 446 49 0 16 chr4 54793309 54793371 -100836749 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1003 727 204 99 0 chr4 54793371 54793419 -100836701 - Lx9 LINE L1 -161 7483 7424 4 1003 1574 166 66 14 chr4 54793421 54793709 -100836411 + Lx9 LINE L1 7105 7407 -237 4 1003 242 297 0 111 chr4 54794394 54794466 -100835654 - B4 SINE B4 0 292 229 4 1003 604 161 14 0 chr4 54794490 54794633 -100835487 + CT-rich Low_complexity Low_complexity 2 146 0 4 1003 458 289 105 44 chr4 54794639 54794820 -100835300 - B4 SINE B4 -96 196 5 4 1003 276 335 67 81 chr4 54794993 54795276 -100834844 - ORR1D2 LTR MaLR -12 358 80 4 1003 208 328 266 34 chr4 54796393 54796570 -100833550 - L3 LINE CR1 -1136 3353 3136 4 1003 181 57 28 28 chr4 54797442 54797478 -100832642 + (CCA)n Simple_repeat Simple_repeat 2 37 0 4 1003 251 321 78 14 chr4 54797780 54797922 -100832198 + MIR3 SINE MIR 58 208 0 4 1003 207 0 0 0 chr4 54799271 54799294 -100830826 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1003 822 21 0 0 chr4 54799628 54799724 -100830396 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 1003 213 121 0 0 chr4 54800536 54800569 -100829551 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1003 23 0 0 0 chr4 54800671 54800694 -100829426 + AT_rich Low_complexity Low_complexity 1 23 0 4 1003 870 279 54 36 chr4 54800703 54800982 -100829138 + B4A SINE B4 1 284 -8 4 1003 1855 178 68 41 chr4 54801453 54801822 -100828298 + ORR1B1 LTR MaLR 5 383 -11 4 1003 316 340 34 47 chr4 54802103 54802251 -100827869 - MIRc SINE MIR -113 155 10 4 1003 397 284 89 16 chr4 54802851 54803013 -100827107 + MIRc SINE MIR 18 193 -83 4 1003 570 15 0 0 chr4 54804490 54804557 -100825563 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1003 490 230 223 0 chr4 54804664 54804803 -100825317 + MER20 DNA MER1_type 2 171 -48 4 1003 397 314 0 0 chr4 54804897 54804983 -100825137 + B1F1 SINE Alu 19 104 -45 4 1003 398 165 13 0 chr4 54804986 54805065 -100825055 + GA-rich Low_complexity Low_complexity 2 81 0 4 1003 44 0 0 0 chr4 54805159 54805203 -100824917 + AT_rich Low_complexity Low_complexity 1 44 0 4 1003 1023 167 7 3 chr4 54806003 54806297 -100823823 + GA-rich Low_complexity Low_complexity 1 294 0 4 1003 319 206 0 56 chr4 54806696 54806766 -100823354 - ID_B1 SINE B4 -7 217 152 4 1003 1463 178 56 118 chr4 54806766 54807174 -100822946 + ORR1B1 LTR MaLR 3 385 -9 4 1003 436 273 83 14 chr4 54807178 54807323 -100822797 - ID_B1 SINE B4 -66 158 4 4 1003 295 255 85 119 chr4 54807459 54807811 -100822309 - Lx9 LINE L1 -1 7643 7304 4 1003 1379 260 25 41 chr4 54808712 54809077 -100821043 - MTE2b LTR MaLR -13 366 8 4 1003 314 194 53 53 chr4 54809481 54809557 -100820563 - L1MA5 LINE L1 -17 6283 6207 4 1003 584 265 56 75 chr4 54809562 54809825 -100820295 + B4A SINE B4 1 263 -29 4 1003 1105 270 73 35 chr4 54809862 54810258 -100819862 - L1MA6 LINE L1 -105 6195 5785 4 1003 363 105 0 0 chr4 54810294 54810351 -100819769 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1003 752 279 18 40 chr4 54810794 54811022 -100819098 + ID_B1 SINE B4 2 224 0 4 1003 813 140 0 0 chr4 54811032 54811210 -100818910 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 4 1003 311 297 78 94 chr4 54812009 54812265 -100817855 + MLT1L LTR MaLR 171 422 -188 4 1003 1966 119 148 36 chr4 54812454 54812812 -100817308 + RMER10B LTR ERVL 1 398 0 4 1003 743 224 7 7 chr4 54814200 54814348 -100815772 + B1F SINE Alu 1 148 -1 4 1003 363 264 49 14 chr4 54814345 54814487 -100815633 - Zaphod DNA Tip100 -296 3735 3589 4 1003 246 167 32 48 chr4 54814522 54814585 -100815535 - Zaphod DNA Tip100 -558 3473 3412 4 1003 726 367 81 77 chr4 54814649 54814831 -100815289 - Zaphod DNA Tip100 -3367 664 475 4 1003 863 273 56 39 chr4 54814831 54815117 -100815003 + B4A SINE B4 2 292 0 4 1003 726 367 81 77 chr4 54815117 54815132 -100814988 - Zaphod DNA Tip100 -3557 474 463 4 1003 405 0 0 0 chr4 54815132 54815177 -100814943 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1003 726 367 81 77 chr4 54815177 54815630 -100814490 - Zaphod DNA Tip100 -3569 462 10 4 1003 282 326 38 14 chr4 54815825 54815941 -100814179 + B1F2 SINE Alu 2 116 -1 4 1003 458 283 8 42 chr4 54816145 54816263 -100813857 - RSINE1 SINE B4 -21 144 31 4 1003 308 280 79 43 chr4 54816304 54816468 -100813652 + L1MB7 LINE L1 5994 6163 -15 4 1003 314 307 34 11 chr4 54816481 54816570 -100813550 - PB1D7 SINE Alu -7 113 23 4 1003 286 269 25 38 chr4 54816650 54816777 -100813343 - MTE2a LTR MaLR -13 366 239 4 1003 497 317 75 30 chr4 54817776 54818043 -100812077 - Lx8 LINE L1 -2 7471 7193 4 1003 308 302 49 21 chr4 54818534 54818676 -100811444 + MIRb SINE MIR 109 254 -14 4 1003 305 356 0 0 chr4 54818928 54819015 -100811105 - MLT1E1A LTR MaLR -54 626 540 4 1003 1283 245 88 26 chr4 54819025 54819136 -100810984 + ORR1D1 LTR MaLR 1 104 -270 4 1003 4699 42 0 0 chr4 54819136 54819664 -100810456 + L1Md_T LINE L1 6055 6582 0 4 1003 1283 245 88 26 chr4 54819664 54819904 -100810216 + ORR1D1 LTR MaLR 105 374 0 4 1003 527 300 94 37 chr4 54819906 54820154 -100809966 - MLT1E1A LTR MaLR -169 511 191 4 1003 387 291 31 69 chr4 54820199 54820358 -100809762 - MLT1E1A LTR MaLR -501 153 1 4 1003 243 0 0 0 chr4 54820402 54820429 -100809691 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1003 361 245 96 19 chr4 54820490 54820594 -100809526 - MTE2a LTR MaLR -14 365 254 4 1003 324 249 75 14 chr4 54820608 54820751 -100809369 - MTE2a LTR MaLR -293 126 1 4 1003 700 251 151 0 chr4 54821022 54821201 -100808919 + ID_B1 SINE B4 1 206 -18 4 1003 471 100 0 0 chr4 54821233 54821303 -100808817 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1003 194 398 10 10 chr4 54821923 54822027 -100808093 + L2b LINE L2 3063 3166 -209 4 1003 1148 286 51 14 chr4 54822856 54823207 -100806913 + Lx8 LINE L1 6929 7292 -181 4 1003 231 36 0 0 chr4 54823303 54823331 -100806789 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1003 396 0 0 0 chr4 54823331 54823374 -100806746 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1003 363 205 0 33 chr4 54823387 54823399 -100806721 + ID_B1 SINE B4 137 224 0 5 1003 595 38 13 0 chr4 54823399 54823478 -100806642 + B1_Mm SINE Alu 68 147 0 5 1003 1079 79 58 0 chr4 54823489 54823628 -100806492 + B1_Mm SINE Alu 1 147 0 5 1003 898 167 229 6 chr4 54823645 54823820 -100806300 - B3 SINE B2 -1 215 2 5 1003 1197 263 56 45 chr4 54823941 54824319 -100805801 - Lx8 LINE L1 0 7473 7092 5 1003 342 0 0 0 chr4 54825119 54825157 -100804963 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1003 812 242 0 0 chr4 54825157 54825310 -100804810 - B3A SINE B2 -44 154 2 5 1003 486 0 0 0 chr4 54825891 54825945 -100804175 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1003 442 282 144 17 chr4 54827539 54827712 -100802408 - MLT1A1 LTR MaLR 0 408 214 5 1003 537 16 0 0 chr4 54827723 54827785 -100802335 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1003 405 0 0 0 chr4 54827785 54827829 -100802291 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1003 812 293 23 46 chr4 54827871 54828132 -100801988 - B4A SINE B4 -23 269 15 5 1003 200 267 13 117 chr4 54828137 54828253 -100801867 - MIR SINE MIR -150 112 13 5 1003 795 284 42 14 chr4 54828312 54828526 -100801594 - ID_B1 SINE B4 -1 223 4 5 1003 769 87 0 31 chr4 54828853 54828983 -100801137 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 5 1003 779 306 95 33 chr4 54829224 54829467 -100800653 - B4 SINE B4 -22 270 13 5 1003 1140 106 0 0 chr4 54830170 54830340 -100799780 + (TTC)n Simple_repeat Simple_repeat 1 170 0 5 1003 847 253 40 44 chr4 54830530 54830782 -100799338 + Lx8 LINE L1 6576 6826 -647 5 1003 831 347 65 0 chr4 54830825 54831165 -100798955 + Lx8 LINE L1 6911 7272 -201 5 1003 2429 99 12 0 chr4 54831343 54831675 -100798445 + L1_Mus3 LINE L1 6287 6622 -16 5 1003 486 0 0 0 chr4 54831677 54831731 -100798389 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 1003 315 71 0 0 chr4 54832304 54832346 -100797774 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 5 1003 248 0 0 30 chr4 54832373 54832406 -100797714 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1003 364 293 41 55 chr4 54833135 54833355 -100796765 + L1_Mur3 LINE L1 1528 1744 -4136 5 1003 351 105 0 0 chr4 54833399 54833456 -100796664 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 5 1003 363 155 0 0 chr4 54833458 54833542 -100796578 + (TTG)n Simple_repeat Simple_repeat 2 85 0 5 1003 354 276 41 0 chr4 54833546 54833644 -100796476 + L1_Rod LINE L1 1778 1879 -3968 5 1003 300 279 74 13 chr4 54833635 54833784 -100796336 + L1M2 LINE L1 2547 2704 -4145 5 1003 263 155 141 0 chr4 54833817 54833888 -100796232 + L1_Rod LINE L1 2104 2184 -3663 5 1003 33737 72 2 3 chr4 54833913 54839197 -100790923 + L1Md_F2 LINE L1 217 5589 -297 5 1003 8604 51 1 1 chr4 54839197 54840191 -100789929 + L1Md_F2 LINE L1 5590 6583 -2 5 1003 2653 297 53 149 chr4 54840192 54841026 -100789094 + L1_Mur3 LINE L1 2184 3005 -2875 5 1003 438 137 463 0 chr4 54841026 54841121 -100788999 + B1_Mur4 SINE Alu 1 139 -11 5 1003 729 0 0 0 chr4 54841122 54841203 -100788917 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 5 1003 924 59 0 0 chr4 54841203 54841321 -100788799 + (GGGA)n Simple_repeat Simple_repeat 4 122 0 5 1003 2653 297 53 149 chr4 54841321 54841608 -100788512 + L1_Mur3 LINE L1 3006 3291 -2589 5 1003 488 254 105 0 chr4 54841608 54841722 -100788398 + RSINE1 SINE B4 2 127 -38 5 1003 2653 297 53 149 chr4 54841722 54842408 -100787712 + L1_Mur3 LINE L1 3292 3974 -1906 5 1003 703 191 6 109 chr4 54842408 54842573 -100787547 + B1_Mus1 SINE Alu 1 148 0 5 1003 2653 297 53 149 chr4 54842573 54843612 -100786508 + L1_Mur3 LINE L1 3975 5012 -868 5 1003 3578 115 21 10 chr4 54843617 54843819 -100786301 + Lx2 LINE L1 6475 6686 -311 5 1003 216 0 0 0 chr4 54843819 54843843 -100786277 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1003 3578 115 21 10 chr4 54843843 54844157 -100785963 + Lx2 LINE L1 6687 6996 -1 5 1003 274 286 40 40 chr4 54844163 54844267 -100785853 + L1_Rod LINE L1 5091 5198 -649 5 1003 215 103 26 0 chr4 54844267 54844306 -100785814 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 5 1003 274 286 40 40 chr4 54844306 54844325 -100785795 + L1_Rod LINE L1 5199 5214 -633 5 1003 234 0 0 0 chr4 54844343 54844369 -100785751 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 5 1003 212 0 0 35 chr4 54844371 54844400 -100785720 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 5 1003 237 247 141 0 chr4 54844417 54844502 -100785618 + L1_Mur3 LINE L1 5309 5405 -475 5 1003 729 222 26 0 chr4 54844545 54844698 -100785422 - B3A SINE B2 -41 157 1 5 1003 576 0 0 0 chr4 54844707 54844771 -100785349 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1003 331 277 30 0 chr4 54845031 54845132 -100784988 - Helitron3Na_Mam RC Helitron -345 141 38 5 1003 318 348 80 54 chr4 54845173 54845523 -100784597 - L2c LINE L2 0 3387 3029 5 1003 194 0 39 0 chr4 54846491 54846517 -100783603 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 5 1003 238 344 111 47 chr4 54846764 54846935 -100783185 - MIRb SINE MIR -81 187 6 5 1003 203 0 0 36 chr4 54847034 54847062 -100783058 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 1003 451 314 42 40 chr4 54847164 54847393 -100782727 + MIRb SINE MIR 30 268 0 5 1003 459 248 122 20 chr4 54847398 54847546 -100782574 - L1M5 LINE L1 -422 5702 5540 5 1003 252 0 0 0 chr4 54847699 54847727 -100782393 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1003 213 39 0 0 chr4 54847727 54847752 -100782368 + (CG)n Simple_repeat Simple_repeat 2 27 0 5 1003 253 259 0 0 chr4 54847770 54847824 -100782296 - RSINE1 SINE B4 -39 126 73 5 1003 839 246 18 45 chr4 54847887 54848108 -100782012 - ID_B1 SINE B4 0 224 10 5 1003 224 358 9 9 chr4 54848501 54848611 -100781509 + MIR3 SINE MIR 50 159 -49 5 1003 861 271 105 94 chr4 54848668 54849020 -100781100 + ORR1E LTR MaLR 4 359 -11 5 1003 1387 224 88 30 chr4 54849262 54849658 -100780462 - MTD LTR MaLR 0 419 1 5 1003 315 296 149 28 chr4 54852170 54852351 -100777769 - MIR SINE MIR -54 208 6 5 1003 239 311 154 8 chr4 54852630 54852753 -100777367 - MIRb SINE MIR -8 260 120 5 1003 818 319 84 7 chr4 54853084 54853431 -100776689 + L1MB3 LINE L1 5648 6025 -158 5 1003 2264 141 30 33 chr4 54853431 54853799 -100776321 + ORR1B2 LTR MaLR 1 367 0 5 1003 818 319 84 7 chr4 54853799 54853877 -100776243 + L1MB3 LINE L1 6026 6105 -78 5 1003 473 298 163 0 chr4 54853938 54854079 -100776041 - RSINE1 SINE B4 0 165 2 5 1003 363 73 0 0 chr4 54854501 54854556 -100775564 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1003 378 313 0 7 chr4 54854558 54854578 -100775542 + (TATATG)n Simple_repeat Simple_repeat 6 25 0 5 1003 404 0 10 136 chr4 54854578 54854776 -100775344 + (ATTAG)n Simple_repeat Simple_repeat 4 176 0 5 1003 378 313 0 7 chr4 54854776 54854903 -100775217 + (TATATG)n Simple_repeat Simple_repeat 5 131 0 5 1003 361 247 21 48 chr4 54855382 54855505 -100774615 + RSINE1 SINE B4 1 115 -177 5 1003 8493 34 17 22 chr4 54855758 54856757 -100773363 + L1Md_F2 LINE L1 5587 6580 -2 5 1003 22 0 0 0 chr4 54857498 54857520 -100772600 + AT_rich Low_complexity Low_complexity 1 22 0 5 1003 180 111 0 0 chr4 54858026 54858053 -100772067 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1003 1378 162 148 0 chr4 54858362 54858645 -100771475 - ORR1B1 LTR MaLR -69 325 1 5 1003 519 234 63 0 chr4 54858707 54858818 -100771302 + PB1D9 SINE Alu 2 119 -1 5 1003 198 103 0 0 chr4 54858825 54858854 -100771266 + (GGA)n Simple_repeat Simple_repeat 3 31 0 5 1003 283 219 130 40 chr4 54859049 54859149 -100770971 + MT2B LTR ERVL 168 276 -325 5 1003 366 292 28 0 chr4 54859063 54859169 -100770951 + B1F2 SINE Alu 35 143 -6 5 1003 1424 39 6 0 chr4 54859190 54859369 -100770751 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 5 1003 258 311 70 16 chr4 54859547 54859733 -100770387 + HAL1 LINE L1 1407 1602 -905 5 1003 489 252 28 9 chr4 54859736 54859844 -100770276 + ID_B1 SINE B4 94 203 -21 5 1003 1097 81 0 7 chr4 54860472 54860609 -100769511 + B1_Mus1 SINE Alu 1 136 -12 5 1003 723 70 8 26 chr4 54860609 54860726 -100769394 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 5 1003 30 27 0 0 chr4 54860871 54860908 -100769212 + AT_rich Low_complexity Low_complexity 1 37 0 5 1003 555 16 0 0 chr4 54860934 54860998 -100769122 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1003 394 261 202 0 chr4 54861355 54861474 -100768646 + B3A SINE B2 26 168 -30 5 1003 543 112 0 0 chr4 54861477 54861566 -100768554 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1003 596 268 8 0 chr4 54861594 54861721 -100768399 + B3 SINE B2 44 171 -45 5 1003 732 188 125 0 chr4 54861973 54862101 -100768019 + B1_Mur2 SINE Alu 1 144 -5 5 1003 252 0 0 0 chr4 54862118 54862146 -100767974 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 5 1003 741 225 8 0 chr4 54862255 54862384 -100767736 - RSINE1 SINE B4 -25 140 11 5 1003 232 204 56 0 chr4 54862883 54862937 -100767183 + L1MA5 LINE L1 5546 5602 -695 5 1003 331 266 141 0 chr4 54863011 54863139 -100766981 + L1MA5 LINE L1 5602 5747 -553 5 1003 959 242 162 41 chr4 54863255 54863623 -100766497 + L1MA5 LINE L1 5754 6166 -134 5 1003 3437 77 13 46 chr4 54863623 54864097 -100766023 + L1_Mus4 LINE L1 6178 6635 -1 5 1003 959 242 162 41 chr4 54864097 54864215 -100765905 + L1MA5 LINE L1 6167 6299 -1 5 1003 1516 228 38 62 chr4 54864385 54864754 -100765366 - MTEb LTR MaLR -2 377 18 5 1003 284 247 72 41 chr4 54868872 54868969 -100761151 + PB1D10 SINE Alu 1 100 -20 5 1003 226 269 15 0 chr4 54868980 54869047 -100761073 + ID4_ SINE ID 16 83 0 5 1003 318 294 80 133 chr4 54869334 54869423 -100760697 - MLT1C LTR MaLR -10 380 299 5 1003 573 15 0 0 chr4 54869423 54869489 -100760631 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 1003 590 267 63 68 chr4 54869489 54869736 -100760384 - MLT1C LTR MaLR -166 301 62 5 1003 224 250 17 0 chr4 54871123 54871183 -100758937 + MIRb SINE MIR 182 242 -26 5 1003 647 224 146 6 chr4 54871821 54871992 -100758128 + MLT1A1 LTR MaLR 214 408 0 5 1003 300 253 31 31 chr4 54872803 54872901 -100757219 - ID_B1 SINE B4 -123 101 4 5 1003 1263 251 47 69 chr4 54873531 54873894 -100756226 - ORR1E LTR MaLR -4 355 1 5 1003 203 355 22 22 chr4 54873984 54874076 -100756044 + MIRb SINE MIR 136 227 -41 5 1003 832 300 0 5 chr4 54874559 54874750 -100755370 - ID_B1 SINE B4 -8 216 27 6 1003 1141 91 0 7 chr4 54874752 54874896 -100755224 + B1_Mus2 SINE Alu 5 147 0 6 1003 206 246 122 14 chr4 54875179 54875253 -100754867 + L2a LINE L2 3115 3196 -230 6 1003 247 232 171 52 chr4 54875284 54875361 -100754759 + L2a LINE L2 3247 3383 -43 6 1003 180 111 0 0 chr4 54875407 54875434 -100754686 + (CAT)n Simple_repeat Simple_repeat 1 27 0 6 1003 427 184 0 17 chr4 54876193 54876258 -100753862 + polypyrimidine Low_complexity Low_complexity 51 115 0 6 1003 243 0 0 0 chr4 54876258 54876285 -100753835 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1003 427 184 0 17 chr4 54876285 54876335 -100753785 + polypyrimidine Low_complexity Low_complexity 3 50 0 6 1003 567 0 0 0 chr4 54876336 54876399 -100753721 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1003 560 299 88 74 chr4 54876423 54876708 -100753412 - B4A SINE B4 -3 289 1 6 1003 23 0 0 0 chr4 54876745 54876768 -100753352 + AT_rich Low_complexity Low_complexity 1 23 0 6 1003 1274 304 40 50 chr4 54877452 54877818 -100752302 + Lx8 LINE L1 6921 7279 -194 6 1003 1123 172 94 0 chr4 54877818 54878021 -100752099 + URR1A DNA MER1_type 5 226 0 6 1003 1274 304 40 50 chr4 54878021 54878208 -100751912 + Lx8 LINE L1 7280 7468 -5 6 1003 202 312 105 60 chr4 54878864 54878997 -100751123 - MIRb SINE MIR -67 201 63 6 1003 688 273 0 7 chr4 54879513 54879657 -100750463 + B3A SINE B2 5 147 -51 6 1003 426 20 0 0 chr4 54879657 54879708 -100750412 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1003 431 266 112 90 chr4 54879708 54879741 -100750379 + B2_Mm2 SINE B2 147 185 -10 6 1003 626 286 56 45 chr4 54880388 54880567 -100749553 + B3A SINE B2 2 182 -16 6 1003 918 265 33 0 chr4 54880593 54880804 -100749316 + ID_B1 SINE B4 1 218 -6 6 1003 1051 234 9 27 chr4 54881128 54881348 -100748772 + B3 SINE B2 1 216 0 6 1003 782 289 0 0 chr4 54882145 54882304 -100747816 + RSINE1 SINE B4 1 159 -6 6 1003 401 36 18 0 chr4 54882316 54882371 -100747749 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 6 1003 387 159 0 55 chr4 54882905 54882978 -100747142 + MT2B LTR ERVL 189 257 -344 6 1003 702 103 9 9 chr4 54882915 54883023 -100747097 + B1_Mur4 SINE Alu 43 150 0 6 1003 399 127 0 0 chr4 54883023 54883086 -100747034 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1003 1035 115 0 0 chr4 54883088 54883245 -100746875 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 6 1003 279 54 0 0 chr4 54883275 54883312 -100746808 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1003 400 323 51 34 chr4 54883395 54883632 -100746488 + MamRep137 DNA TcMar? 134 374 -70 6 1003 195 325 34 67 chr4 54883735 54883824 -100746296 - L2c LINE L2 0 3375 3290 6 1003 233 231 198 37 chr4 54884045 54884126 -100745994 - B3A SINE B2 -104 94 1 6 1003 351 0 0 0 chr4 54884401 54884440 -100745680 + (TTA)n Simple_repeat Simple_repeat 2 40 0 6 1003 389 333 28 83 chr4 54884457 54884637 -100745483 - B3A SINE B2 -18 180 11 6 1003 216 336 68 8 chr4 54884771 54884903 -100745217 - L2c LINE L2 -260 3127 2988 6 1003 185 371 22 0 chr4 54885366 54885455 -100744665 - L2c LINE L2 -1000 2419 2329 6 1003 204 143 24 0 chr4 54886230 54886272 -100743848 + T-rich Low_complexity Low_complexity 2 44 0 6 1003 1252 218 34 77 chr4 54886279 54886743 -100743377 + MT2A LTR ERVL 1 554 -47 6 1003 248 276 0 0 chr4 54886743 54886801 -100743319 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1003 1339 241 85 23 chr4 54886873 54887225 -100742895 + MTEa LTR MaLR 1 374 -5 6 1003 343 321 0 18 chr4 54887469 54887580 -100742540 + PB1D7 SINE Alu 3 111 -9 6 1003 211 308 30 15 chr4 54887704 54887770 -100742350 + MIRb SINE MIR 166 232 -36 6 1003 31 44 0 0 chr4 54888272 54888317 -100741803 + AT_rich Low_complexity Low_complexity 1 45 0 6 1003 197 293 70 118 chr4 54888786 54888972 -100741148 + MIRb SINE MIR 39 215 -53 6 1003 189 74 0 0 chr4 54890628 54890655 -100739465 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1003 1001 89 7 0 chr4 54890697 54890843 -100739277 + (TTCTCC)n Simple_repeat Simple_repeat 1 147 0 6 1003 225 196 0 0 chr4 54890906 54890962 -100739158 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1003 308 317 144 14 chr4 54891257 54891465 -100738655 - LTR16A1 LTR ERVL -9 447 213 6 1003 306 274 0 14 chr4 54891918 54891992 -100738128 + ID4_ SINE ID 5 77 -6 6 1003 230 238 78 16 chr4 54892062 54892126 -100737994 + PB1D7 SINE Alu 16 83 -37 6 1003 454 273 10 0 chr4 54892070 54892169 -100737951 + ID_B1 SINE B4 105 204 -20 6 1003 837 204 7 7 chr4 54892193 54892341 -100737779 - B1_Mur3 SINE Alu 0 149 2 6 1003 258 32 0 0 chr4 54892589 54892620 -100737500 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 6 1003 4405 125 2 3 chr4 54892694 54893337 -100736783 + Lx LINE L1 5926 6567 -87 6 1003 3180 33 0 0 chr4 54893332 54893699 -100736421 + L1Md_T LINE L1 5220 5586 -297 6 1003 8609 53 0 0 chr4 54893699 54894695 -100735425 + L1Md_T LINE L1 5587 6582 0 6 1003 809 268 43 10 chr4 54894703 54894910 -100735210 - B3 SINE B2 0 216 3 6 1003 546 43 0 0 chr4 54895359 54895428 -100734692 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 6 1003 4390 126 2 2 chr4 54895502 54896144 -100733976 + Lx LINE L1 5926 6567 -87 6 1003 3207 30 0 0 chr4 54896139 54896506 -100733614 + L1Md_F2 LINE L1 5220 5586 -297 6 1003 8729 38 2 14 chr4 54896506 54897514 -100732606 + L1Md_F2 LINE L1 5587 6582 0 6 1003 541 107 0 37 chr4 54897525 54897632 -100732488 + Lx LINE L1 6549 6651 -3 6 1003 705 63 0 0 chr4 54897669 54897764 -100732356 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 1003 277 192 55 55 chr4 54898830 54898885 -100731235 + RSINE1 SINE B4 103 157 -8 6 1003 459 259 66 41 chr4 54898966 54899087 -100731033 + RSINE1 SINE B4 21 144 -21 6 1003 247 341 16 31 chr4 54899252 54899379 -100730741 + MER3 DNA MER1_type 81 205 -4 6 1003 480 285 54 0 chr4 54899880 54900010 -100730110 + B1F SINE Alu 1 137 -12 6 1003 617 69 0 11 chr4 54900012 54900100 -100730020 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 6 1003 684 245 0 26 chr4 54900195 54900346 -100729774 - B1_Mur1 SINE Alu 0 149 3 6 1003 699 46 0 0 chr4 54900404 54900491 -100729629 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 6 1003 489 97 0 0 chr4 54900595 54900667 -100729453 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 6 1003 204 320 123 28 chr4 54900870 54900976 -100729144 - MIRc SINE MIR -114 154 39 6 1003 246 95 0 0 chr4 54900987 54901029 -100729091 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1003 1683 43 0 0 chr4 54901032 54901217 -100728903 + B2_Mm1t SINE B2 5 189 -4 6 1003 252 310 0 0 chr4 54901265 54901336 -100728784 + Lx9 LINE L1 7205 7275 -369 6 1003 227 287 184 0 chr4 54902064 54902151 -100727969 - MIRb SINE MIR -132 136 34 6 1003 398 339 0 0 chr4 54902443 54902558 -100727562 - PB1D10 SINE Alu -2 115 1 6 1003 287 290 0 0 chr4 54903291 54903353 -100726767 - ID4_ SINE ID -4 79 18 6 1003 842 237 105 0 chr4 54903438 54903628 -100726492 + ID_B1 SINE B4 10 219 -5 6 1003 203 287 218 0 chr4 54904272 54904359 -100725761 + MIRc SINE MIR 19 124 -144 6 1003 541 71 24 0 chr4 54904506 54904520 -100725600 + (GAGAA)n Simple_repeat Simple_repeat 4 19 0 6 1003 1117 103 11 0 chr4 54904520 54904695 -100725425 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 6 1003 541 71 24 0 chr4 54904695 54904765 -100725355 + (GAGAA)n Simple_repeat Simple_repeat 5 74 0 6 1003 225 211 0 0 chr4 54905762 54905814 -100724306 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1003 621 250 7 48 chr4 54905926 54906073 -100724047 + ID_B1 SINE B4 83 223 -1 6 1003 648 0 0 0 chr4 54906080 54906152 -100723968 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 6 1003 819 228 0 0 chr4 54909446 54909595 -100720525 - B1_Mur1 SINE Alu 0 149 1 6 1003 745 279 76 29 chr4 54909860 54910070 -100720050 - B4A SINE B4 -70 222 3 6 1003 468 214 15 8 chr4 54910456 54910588 -100719532 + Lx9 LINE L1 7511 7643 -1 6 1003 521 253 130 60 chr4 54911261 54911446 -100718674 + B3A SINE B2 1 198 0 6 1003 330 312 11 0 chr4 54912256 54912349 -100717771 - ID_B1 SINE B4 -19 205 112 6 1003 22 0 0 0 chr4 54912370 54912392 -100717728 + AT_rich Low_complexity Low_complexity 1 22 0 6 1003 8097 58 5 0 chr4 54912572 54913724 -100716396 - L1_Mus1 LINE L1 0 6567 5410 6 1003 1203 179 47 5 chr4 54913769 54913982 -100716138 + URR1A DNA MER1_type 5 226 0 6 1003 377 210 362 20 chr4 54915823 54915978 -100714142 + B3A SINE B2 2 209 -7 6 1003 2743 71 3 0 chr4 54916357 54916682 -100713438 - ORR1A2 LTR MaLR 0 327 2 6 1003 753 252 151 20 chr4 54916747 54916998 -100713122 - B4 SINE B4 -8 284 1 6 1003 26 30 0 0 chr4 54917055 54917088 -100713032 + AT_rich Low_complexity Low_complexity 1 33 0 6 1003 203 281 18 0 chr4 54918113 54918170 -100711950 - L3b LINE CR1 -392 90 33 6 1004 246 269 119 0 chr4 54919422 54919489 -100710631 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 6 1004 288 232 71 0 chr4 54919438 54919494 -100710626 - ID4_ SINE ID -22 61 2 6 1004 480 257 234 0 chr4 54919937 54920112 -100710008 + ID_B1 SINE B4 1 216 -8 6 1004 231 114 0 0 chr4 54920565 54920609 -100709511 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1004 300 248 8 23 chr4 54920617 54920745 -100709375 + T-rich Low_complexity Low_complexity 5 130 0 6 1004 29 70 0 0 chr4 54920745 54920802 -100709318 + AT_rich Low_complexity Low_complexity 1 57 0 6 1004 661 222 141 6 chr4 54920811 54920974 -100709146 - B3A SINE B2 -13 185 1 6 1004 904 179 0 0 chr4 54921055 54921200 -100708920 + B1_Mur4 SINE Alu 5 149 -1 6 1004 427 217 0 0 chr4 54921351 54921420 -100708700 + ID4 SINE ID 4 72 -11 6 1004 414 0 0 0 chr4 54922140 54922186 -100707934 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1004 595 224 9 0 chr4 54922187 54922303 -100707817 - RSINE1 SINE B4 -45 120 4 7 1004 724 234 48 39 chr4 54924083 54924273 -100705847 + B3A SINE B2 17 211 -5 7 1004 240 343 90 7 chr4 54924409 54924553 -100705567 - L2c LINE L2 0 3426 3271 7 1004 216 299 0 58 chr4 54924585 54924688 -100705432 + (TATG)n Simple_repeat Simple_repeat 4 100 0 7 1004 245 331 65 16 chr4 54924705 54924828 -100705292 - L2c LINE L2 -224 3163 3035 7 1004 214 326 53 21 chr4 54925011 54925105 -100705015 - L2c LINE L2 -637 2782 2686 7 1004 857 164 203 60 chr4 54925254 54925436 -100704684 + B3 SINE B2 1 208 -8 7 1004 740 102 25 0 chr4 54925454 54925572 -100704548 + (GAGAA)n Simple_repeat Simple_repeat 5 125 0 7 1004 324 325 67 54 chr4 54925597 54925912 -100704208 - L2c LINE L2 -921 2498 2180 7 1004 374 300 274 20 chr4 54926317 54926470 -100703650 + B4 SINE B4 11 202 -90 7 1004 757 265 58 12 chr4 54926626 54927002 -100703118 - MTD LTR MaLR -14 405 1 7 1004 661 274 123 19 chr4 54927576 54927844 -100702276 + Lx8 LINE L1 7172 7467 -6 7 1004 34 42 0 0 chr4 54927988 54928036 -100702084 + AT_rich Low_complexity Low_complexity 1 48 0 7 1004 258 32 0 0 chr4 54928214 54928245 -100701875 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1004 284 214 75 40 chr4 54928256 54928373 -100701747 - Lx9 LINE L1 -375 5928 5789 7 1004 568 275 20 39 chr4 54928708 54928806 -100701314 + ID_B1 SINE B4 70 168 -56 7 1004 2624 108 139 39 chr4 54928806 54929238 -100700882 + MT2C_Mm LTR ERVL 1 475 0 7 1004 568 267 7 29 chr4 54929238 54929295 -100700825 + ID_B1 SINE B4 169 222 -2 7 1004 29 28 0 0 chr4 54929295 54929331 -100700789 + AT_rich Low_complexity Low_complexity 1 36 0 7 1004 699 252 0 0 chr4 54929331 54929474 -100700646 + ID_B1 SINE B4 80 222 -2 7 1004 613 219 85 28 chr4 54929480 54929621 -100700499 + B1_Mur2 SINE Alu 1 149 0 7 1004 315 0 0 0 chr4 54929823 54929858 -100700262 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1004 594 0 0 0 chr4 54929858 54929923 -100700197 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1004 201 267 171 13 chr4 54930035 54930111 -100700009 + L3 LINE CR1 3189 3276 -1213 7 1004 377 286 0 0 chr4 54930152 54930229 -100699891 + RSINE1 SINE B4 2 78 -87 7 1004 933 97 0 0 chr4 54930232 54930366 -100699754 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 7 1004 291 339 114 50 chr4 54930547 54930845 -100699275 + L3 LINE CR1 3440 3756 -733 7 1004 346 271 11 45 chr4 54930846 54930935 -100699185 + PB1 SINE Alu 31 116 -11 7 1004 255 289 0 78 chr4 54930943 54931033 -100699087 - ID4 SINE ID 0 83 1 7 1004 274 235 43 29 chr4 54931084 54931154 -100698966 + ID_B1 SINE B4 83 153 -71 7 1004 191 351 42 21 chr4 54931691 54931787 -100698333 + MIR3 SINE MIR 10 107 -101 7 1004 3296 63 5 8 chr4 54931851 54932250 -100697870 - MTB LTR MaLR -2 398 1 7 1004 213 57 0 102 chr4 54932544 54932603 -100697517 + T-rich Low_complexity Low_complexity 2 54 0 7 1004 1158 78 42 0 chr4 54932604 54932746 -100697374 - B1_Mus1 SINE Alu 0 148 1 7 1004 330 297 99 0 chr4 54932875 54932966 -100697154 + PB1D10 SINE Alu 1 100 -17 7 1004 23 0 0 0 chr4 54933058 54933081 -100697039 + AT_rich Low_complexity Low_complexity 1 23 0 7 1004 647 171 19 0 chr4 54933157 54933262 -100696858 + B1_Mus1 SINE Alu 35 141 -7 7 1004 203 0 37 0 chr4 54933278 54933305 -100696815 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1004 322 363 7 88 chr4 54933368 54933504 -100696616 + B1F SINE Alu 1 125 -24 7 1004 2765 165 163 5 chr4 54933495 54934114 -100696006 + RMER19B LTR ERVK 187 902 0 7 1004 242 329 52 13 chr4 54934300 54934377 -100695743 + PB1D9 SINE Alu 2 81 -39 7 1004 535 308 0 0 chr4 54934308 54934438 -100695682 + ID_B1 SINE B4 91 220 -4 7 1004 608 291 7 39 chr4 54934713 54934867 -100695253 + RSINE1 SINE B4 1 149 -16 7 1004 251 114 23 0 chr4 54934868 54934912 -100695208 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 1004 779 269 109 94 chr4 54934914 54935189 -100694931 + B4A SINE B4 8 286 -6 7 1004 222 412 8 50 chr4 54935299 54935419 -100694701 + PB1 SINE Alu 9 123 -4 7 1004 617 213 49 0 chr4 54935428 54935550 -100694570 + B1F SINE Alu 7 134 -15 7 1004 379 287 44 58 chr4 54935550 54935565 -100694555 + ID_B1 SINE B4 88 222 -2 7 1004 444 37 0 0 chr4 54935567 54935621 -100694499 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 7 1004 521 250 35 42 chr4 54935707 54935849 -100694271 + RSINE1 SINE B4 25 165 0 7 1004 1467 73 39 0 chr4 54935886 54936092 -100694028 + Lx3_Mus LINE L1 6788 7001 -8 7 1004 279 0 0 0 chr4 54936337 54936368 -100693752 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1004 595 247 14 131 chr4 54936378 54936592 -100693528 - B3A SINE B2 -7 191 3 7 1004 270 81 0 0 chr4 54936613 54936650 -100693470 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1004 375 261 30 3 chr4 54937164 54937265 -100692855 + PB1D7 SINE Alu 5 106 -14 7 1004 706 266 62 14 chr4 54937280 54937490 -100692630 + ID_B1 SINE B4 1 220 -4 7 1004 261 294 0 133 chr4 54937886 54937984 -100692136 + MT2B2 LTR ERVL 156 240 -344 7 1004 760 200 0 36 chr4 54937901 54938041 -100692079 + B1_Mur1 SINE Alu 7 141 -8 7 1004 505 134 31 0 chr4 54938817 54938914 -100691206 + T-rich Low_complexity Low_complexity 4 103 0 7 1004 420 111 0 0 chr4 54938941 54939004 -100691116 + (CTTA)n Simple_repeat Simple_repeat 1 63 0 7 1004 219 269 108 60 chr4 54939008 54939091 -100691029 - PB1D10 SINE Alu -17 100 14 7 1004 1068 236 84 105 chr4 54939232 54939380 -100690740 - ORR1D2 LTR MaLR -7 363 224 7 1004 1606 129 36 4 chr4 54939380 54939628 -100690492 + L1_Mus2 LINE L1 6311 6566 0 7 1004 1068 236 84 105 chr4 54939628 54939643 -100690477 - ORR1D2 LTR MaLR -147 223 219 7 1004 1284 35 0 0 chr4 54939643 54939784 -100690336 + B1_Mm SINE Alu 1 141 -6 7 1004 522 0 0 0 chr4 54939786 54939844 -100690276 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1004 1068 236 84 105 chr4 54939844 54940046 -100690074 - ORR1D2 LTR MaLR -152 218 2 7 1004 215 300 0 0 chr4 54940183 54940233 -100689887 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1004 197 308 67 110 chr4 54940344 54940508 -100689612 - L3 LINE CR1 -2720 1769 1613 7 1004 261 0 0 0 chr4 54940716 54940745 -100689375 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1004 279 0 0 0 chr4 54940836 54940867 -100689253 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1004 364 208 10 10 chr4 54940950 54941052 -100689068 + GA-rich Low_complexity Low_complexity 2 103 0 7 1004 1362 86 11 0 chr4 54941234 54941409 -100688711 + B2_Mm1t SINE B2 1 177 -16 7 1004 423 95 0 9 chr4 54941453 54941522 -100688598 + B2_Mm2 SINE B2 47 112 -104 7 1004 391 291 111 0 chr4 54941619 54941736 -100688384 + RSINE1 SINE B4 17 146 -19 7 1004 334 309 64 0 chr4 54941797 54941907 -100688213 + B1F SINE Alu 24 140 -9 7 1004 465 34 0 0 chr4 54941907 54941966 -100688154 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1004 881 153 42 0 chr4 54941975 54942119 -100688001 + B1_Mur4 SINE Alu 1 150 0 7 1004 1667 62 0 0 chr4 54942125 54942317 -100687803 + B2_Mm1a SINE B2 2 193 0 7 1004 483 202 39 109 chr4 54942624 54942752 -100687368 - PB1D9 SINE Alu -1 119 1 7 1004 305 343 37 37 chr4 54942771 54942880 -100687240 + PB1D7 SINE Alu 7 115 -5 7 1004 755 75 0 9 chr4 54942880 54942988 -100687132 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 7 1004 192 40 0 0 chr4 54943025 54943050 -100687070 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1004 602 238 66 0 chr4 54943051 54943173 -100686947 - B1_Mur1 SINE Alu -11 138 9 7 1004 594 170 160 0 chr4 54943174 54943280 -100686840 - B1_Mus2 SINE Alu -23 124 2 7 1004 619 267 27 0 chr4 54943299 54943445 -100686675 - B3A SINE B2 -48 150 1 7 1004 259 325 0 0 chr4 54943548 54943628 -100686492 + ID4_ SINE ID 3 82 -1 7 1004 412 269 9 9 chr4 54943696 54943805 -100686315 + PB1D7 SINE Alu 5 113 -7 7 1004 587 254 7 7 chr4 54943970 54944109 -100686011 + B1F2 SINE Alu 5 143 -6 7 1004 494 263 7 83 chr4 54944392 54944537 -100685583 - RSINE1 SINE B4 0 165 32 7 1004 282 287 73 16 chr4 54945307 54945431 -100684689 - RSINE1 SINE B4 -32 133 3 7 1004 497 271 128 35 chr4 54945654 54945824 -100684296 - MTD LTR MaLR -129 290 105 7 1004 742 184 76 54 chr4 54945824 54946008 -100684112 + B3 SINE B2 1 188 -28 7 1004 386 236 111 19 chr4 54946050 54946158 -100683962 - MTD LTR MaLR -295 124 7 7 1004 1199 56 0 0 chr4 54946630 54946773 -100683347 + B1_Mus1 SINE Alu 2 144 -4 7 1004 753 243 0 113 chr4 54946922 54947126 -100682994 - B3A SINE B2 -16 182 2 7 1004 446 241 81 0 chr4 54947183 54947303 -100682817 - PB1D9 SINE Alu -20 129 2 7 1004 26 30 0 0 chr4 54947311 54947344 -100682776 + AT_rich Low_complexity Low_complexity 1 33 0 7 1004 3084 79 7 17 chr4 54947347 54947758 -100682362 - MTB_Mm LTR MaLR 0 407 1 7 1004 813 245 47 0 chr4 54947798 54947990 -100682130 - B3 SINE B2 -13 203 3 7 1004 433 271 40 28 chr4 54948298 54948469 -100681651 - ID_B1 SINE B4 -8 216 49 7 1004 330 234 12 58 chr4 54949042 54949128 -100680992 - ID_B1 SINE B4 -12 212 131 7 1004 846 239 197 29 chr4 54949248 54949364 -100680756 + ORR1D1 LTR MaLR 2 123 -251 7 1004 4584 68 10 2 chr4 54949364 54949943 -100680177 - MT2B2 LTR ERVL 0 584 1 7 1004 846 239 197 29 chr4 54949943 54950141 -100679979 + ORR1D1 LTR MaLR 124 369 -5 7 1004 3617 209 32 32 chr4 54950145 54950966 -100679154 + ORR1D1-int LTR MaLR 1 821 -549 7 1004 564 251 171 0 chr4 54950970 54951145 -100678975 + B3 SINE B2 6 210 -6 7 1004 315 0 0 0 chr4 54951158 54951193 -100678927 + (TGG)n Simple_repeat Simple_repeat 2 36 0 7 1004 1012 46 0 0 chr4 54951193 54951324 -100678796 + B1_Mm SINE Alu 16 146 -1 7 1004 207 0 0 0 chr4 54951325 54951348 -100678772 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1004 448 232 81 0 chr4 54951348 54951447 -100678673 - B1_Mur1 SINE Alu -30 119 13 8 1004 228 255 0 0 chr4 54951545 54951592 -100678528 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 8 1004 928 207 5 20 chr4 54951874 54952071 -100678049 + B3 SINE B2 2 195 -21 8 1004 477 0 0 0 chr4 54952076 54952129 -100677991 + (TAAAA)n Simple_repeat Simple_repeat 5 57 0 8 1004 223 226 0 0 chr4 54952179 54952211 -100677909 + polypyrimidine Low_complexity Low_complexity 23 54 0 8 1004 704 33 0 11 chr4 54952211 54952303 -100677817 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 8 1004 223 226 0 0 chr4 54952303 54952323 -100677797 + polypyrimidine Low_complexity Low_complexity 3 22 0 8 1004 700 255 70 5 chr4 54952346 54952547 -100677573 - ID_B1 SINE B4 -3 221 8 8 1004 264 353 34 0 chr4 54952584 54952703 -100677417 - ID_B1 SINE B4 -13 211 89 8 1004 24 0 0 0 chr4 54953250 54953274 -100676846 + AT_rich Low_complexity Low_complexity 1 24 0 8 1004 233 246 0 0 chr4 54953383 54953444 -100676676 - Lx8 LINE L1 -2 7471 7411 8 1004 444 258 37 120 chr4 54953445 54953661 -100676459 - B3A SINE B2 0 198 1 8 1004 1468 79 0 5 chr4 54953792 54953982 -100676138 - B2_Mm2 SINE B2 -5 190 2 8 1004 389 248 45 96 chr4 54954032 54954188 -100675932 + B1F SINE Alu 2 149 0 8 1004 316 280 9 9 chr4 54954735 54954843 -100675277 - BC1_Mm scRNA scRNA -44 108 1 8 1004 681 13 0 0 chr4 54955332 54955410 -100674710 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 8 1004 1216 112 37 5 chr4 54955680 54955868 -100674252 + B2_Mm2 SINE B2 2 195 0 8 1004 721 193 0 67 chr4 54955901 54956051 -100674069 + B1_Mur3 SINE Alu 9 148 -1 8 1004 519 186 0 0 chr4 54956397 54956499 -100673621 + (TA)n Simple_repeat Simple_repeat 2 103 0 8 1004 312 91 0 0 chr4 54956543 54956587 -100673533 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1004 300 320 23 8 chr4 54958684 54958813 -100671307 + CT-rich Low_complexity Low_complexity 1 131 0 8 1004 227 160 20 20 chr4 54959394 54959445 -100670675 + T-rich Low_complexity Low_complexity 1 51 0 8 1004 363 176 0 0 chr4 54960280 54960371 -100669749 + CT-rich Low_complexity Low_complexity 2 92 0 8 1004 820 91 32 0 chr4 54960730 54960884 -100669236 + (GA)n Simple_repeat Simple_repeat 2 160 0 8 1004 213 264 0 0 chr4 54961016 54961069 -100669051 + GA-rich Low_complexity Low_complexity 2 54 0 8 1004 500 155 0 19 chr4 54961287 54961392 -100668728 + GA-rich Low_complexity Low_complexity 2 104 0 8 1004 479 26 39 13 chr4 54961500 54961578 -100668542 + (GA)n Simple_repeat Simple_repeat 2 81 0 8 1004 488 45 15 0 chr4 54961853 54961920 -100668200 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 1004 254 240 0 0 chr4 54962487 54962537 -100667583 + GA-rich Low_complexity Low_complexity 2 51 0 8 1004 663 78 0 0 chr4 54965044 54965134 -100664986 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 8 1004 21 0 0 0 chr4 54966547 54966568 -100663552 + AT_rich Low_complexity Low_complexity 1 21 0 8 1004 184 324 26 60 chr4 54966582 54966733 -100663387 - MIRb SINE MIR -109 159 14 8 1004 382 62 30 15 chr4 54968846 54968912 -100661208 + (GGGTG)n Simple_repeat Simple_repeat 5 71 0 8 1004 190 304 104 38 chr4 54970537 54970643 -100659477 - MIRb SINE MIR -131 137 25 8 1004 1139 42 7 7 chr4 54970891 54971036 -100659084 - B1_Mus2 SINE Alu -1 146 2 8 1004 581 157 0 19 chr4 54971797 54971901 -100658219 + B1_Mur2 SINE Alu 32 133 -16 8 1004 561 269 79 21 chr4 54973282 54973472 -100656648 + ID_B1 SINE B4 3 203 -21 8 1004 572 261 28 0 chr4 54973572 54973714 -100656406 - ID_B1 SINE B4 -9 215 70 8 1004 324 0 0 0 chr4 54973929 54973965 -100656155 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1004 477 0 0 0 chr4 54973965 54974017 -100656103 + (GA)n Simple_repeat Simple_repeat 1 53 0 8 1004 231 36 0 0 chr4 54974270 54974298 -100655822 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1004 642 216 109 43 chr4 54974341 54974525 -100655595 - B3A SINE B2 -1 197 2 8 1004 332 247 0 22 chr4 54974842 54974933 -100655187 - B1F SINE Alu -59 90 2 8 1004 242 261 128 21 chr4 54975601 54975695 -100654425 + PB1D10 SINE Alu 4 107 -10 8 1004 186 43 0 0 chr4 54975695 54975718 -100654402 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1004 453 19 0 0 chr4 54975722 54975776 -100654344 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1004 28 29 0 0 chr4 54975854 54975889 -100654231 + AT_rich Low_complexity Low_complexity 1 35 0 8 1004 414 0 0 0 chr4 54976011 54976057 -100654063 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 8 1004 334 0 43 0 chr4 54976057 54976103 -100654017 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1004 4161 171 65 12 chr4 54976160 54977016 -100653104 + RMER19B LTR ERVK 1 902 0 8 1004 331 67 83 0 chr4 54977068 54977128 -100652992 + (GAAAA)n Simple_repeat Simple_repeat 5 69 0 8 1004 1670 198 94 15 chr4 54977143 54977548 -100652572 - RMER10A LTR ERVL -5 437 1 8 1004 285 29 0 0 chr4 54977614 54977648 -100652472 + (TATG)n Simple_repeat Simple_repeat 3 36 0 8 1004 197 255 0 0 chr4 54978192 54978239 -100651881 + MIRb SINE MIR 197 243 -25 8 1004 396 0 0 0 chr4 54978678 54978722 -100651398 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1004 241 302 74 16 chr4 54981198 54981319 -100648801 + MIRb SINE MIR 125 252 -16 8 1004 561 42 0 0 chr4 54983539 54983611 -100646509 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 1004 303 28 0 0 chr4 54983611 54983646 -100646474 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1004 261 290 37 0 chr4 54986271 54986378 -100643742 + MER117 DNA MER1_type 7 117 -80 8 1004 903 87 93 13 chr4 54986873 54987024 -100643096 + URR1A DNA MER1_type 64 226 0 8 1004 1383 93 50 36 chr4 54987929 54988151 -100641969 + URR1B DNA MER1_type 1 225 0 8 1004 686 212 20 27 chr4 54988274 54988424 -100641696 + B1F SINE Alu 1 149 0 8 1004 1154 57 0 0 chr4 54988591 54988732 -100641388 + B1_Mus2 SINE Alu 1 141 -6 8 1004 192 40 0 0 chr4 54989423 54989448 -100640672 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 8 1004 455 302 24 8 chr4 54990329 54990456 -100639664 - B1_Mur3 SINE Alu -20 129 1 8 1004 180 111 0 0 chr4 54990460 54990487 -100639633 + (TA)n Simple_repeat Simple_repeat 2 28 0 8 1004 220 249 116 11 chr4 54993137 54993243 -100636877 - MIRc SINE MIR -84 124 10 8 1004 952 97 0 55 chr4 54993612 54993776 -100636344 + B2_Mm2 SINE B2 2 156 -39 8 1004 242 116 23 0 chr4 54993823 54993866 -100636254 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 8 1004 329 284 0 79 chr4 54993869 54993995 -100636125 - PB1D10 SINE Alu -1 116 1 8 1004 216 351 36 9 chr4 54994325 54994437 -100635683 - MIR SINE MIR -44 218 104 8 1004 231 233 233 0 chr4 54994465 54994551 -100635569 + B1F2 SINE Alu 5 110 -10 8 1004 409 174 134 67 chr4 54995080 54995259 -100634861 + MER33 DNA MER1_type 11 201 -123 8 1004 576 0 0 0 chr4 54995292 54995356 -100634764 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1004 774 187 0 0 chr4 54996098 54996237 -100633883 - B1_Mus1 SINE Alu 0 148 10 8 1004 312 94 0 0 chr4 54996302 54996355 -100633765 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1004 1662 42 0 0 chr4 54996355 54996547 -100633573 - B2_Mm1t SINE B2 0 193 2 8 1004 34 0 0 0 chr4 54997016 54997050 -100633070 + AT_rich Low_complexity Low_complexity 1 34 0 8 1004 283 296 8 25 chr4 55000424 55000542 -100629578 - ID_B1 SINE B4 0 224 109 1 1004 584 236 20 14 chr4 55000859 55001005 -100629115 - B1F2 SINE Alu 0 149 3 2 1004 564 15 0 0 chr4 55001188 55001253 -100628867 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1004 452 259 71 0 chr4 55001527 55001639 -100628481 - PB1D9 SINE Alu 0 120 1 4 1004 620 279 18 18 chr4 55001776 55001944 -100628176 - ID_B1 SINE B4 -55 169 2 5 1004 475 264 8 8 chr4 55003000 55003122 -100626998 - ID_B1 SINE B4 0 224 103 6 1004 313 367 170 8 chr4 55003417 55003799 -100626321 - HAL1b LINE L1 -1203 806 363 7 1004 279 0 0 0 chr4 55004254 55004285 -100625835 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1004 283 250 109 31 chr4 55004649 55004777 -100625343 - RMER15 LTR ERVL -16 559 422 9 1004 305 226 120 19 chr4 55005595 55005703 -100624417 + B1F1 SINE Alu 31 149 0 1 1004 767 166 14 0 chr4 55005754 55005893 -100624227 + B1_Mus2 SINE Alu 6 146 -1 1 1004 1544 123 256 12 chr4 55005946 55006140 -100623980 + RMER10B LTR ERVL 1 203 -195 1 1004 936 132 0 0 chr4 55006140 55006292 -100623828 + (TC)n Simple_repeat Simple_repeat 2 153 0 1 1004 1544 123 256 12 chr4 55006292 55006417 -100623703 + RMER10B LTR ERVL 204 398 0 1 1004 2297 106 12 15 chr4 55007375 55007702 -100622418 + ORR1A2 LTR MaLR 2 327 0 1 1004 9887 144 37 18 chr4 55007702 55009461 -100620659 + ORR1A2-int LTR MaLR 1 1792 0 1 1004 2158 89 40 22 chr4 55009461 55009782 -100620338 + ORR1A2 LTR MaLR 1 327 0 1 1004 1245 41 0 0 chr4 55009879 55010025 -100620095 + B1_Mm SINE Alu 2 147 0 1 1004 225 0 0 0 chr4 55010030 55010055 -100620065 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1004 263 203 29 0 chr4 55010201 55010270 -100619850 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 1004 440 269 77 66 chr4 55010887 55011070 -100619050 - MER20 DNA MER1_type -34 185 1 1 1004 180 0 0 0 chr4 55011359 55011379 -100618741 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1004 958 60 0 15 chr4 55011802 55011938 -100618182 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 2 1004 320 215 98 123 chr4 55012228 55012350 -100617770 + PB1D9 SINE Alu 2 120 0 2 1004 227 310 149 20 chr4 55012350 55012376 -100617744 + B4A SINE B4 87 253 -39 2 1004 318 289 99 47 chr4 55012893 55013020 -100617100 - L1MA5 LINE L1 -3 6297 6157 2 1004 423 0 0 0 chr4 55013020 55013067 -100617053 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1004 318 289 99 47 chr4 55013067 55013150 -100616970 - L1MA5 LINE L1 -144 6156 6076 2 1004 227 280 0 0 chr4 55013201 55013251 -100616869 + ID4 SINE ID 34 83 0 2 1004 240 227 51 51 chr4 55013301 55013380 -100616740 - L1MA5 LINE L1 -327 5973 5895 2 1004 32 0 0 0 chr4 55014176 55014208 -100615912 + AT_rich Low_complexity Low_complexity 1 32 0 2 1004 242 56 28 0 chr4 55020692 55020728 -100609392 + (CAT)n Simple_repeat Simple_repeat 3 39 0 2 1004 306 195 0 0 chr4 55022530 55022607 -100607513 + (CCA)n Simple_repeat Simple_repeat 2 78 0 2 1004 180 0 0 0 chr4 55027016 55027036 -100603084 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1004 682 11 23 0 chr4 55027150 55027237 -100602883 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 1004 441 95 0 0 chr4 55027746 55027809 -100602311 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1004 1701 178 62 62 chr4 55028845 55029229 -100600891 - ORR1C2 LTR MaLR 0 384 1 3 1004 298 294 0 12 chr4 55029250 55029336 -100600784 + CT-rich Low_complexity Low_complexity 1 85 0 3 1004 320 321 19 19 chr4 55030401 55030509 -100599611 + RSINE1 SINE B4 1 108 -57 3 1004 360 0 0 0 chr4 55030543 55030583 -100599537 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1004 495 301 90 28 chr4 55031493 55031705 -100598415 - MIR SINE MIR -1 261 37 3 1004 455 160 0 11 chr4 55032521 55032616 -100597504 + CT-rich Low_complexity Low_complexity 6 99 0 3 1004 430 261 68 17 chr4 55032618 55032735 -100597385 - ID_B1 SINE B4 -9 215 93 3 1004 493 281 7 0 chr4 55034327 55034462 -100595658 - B1F1 SINE Alu -13 136 1 3 1004 324 284 0 0 chr4 55034563 55034637 -100595483 + B3A SINE B2 1 74 -124 4 1004 23 54 0 0 chr4 55034637 55034674 -100595446 + AT_rich Low_complexity Low_complexity 1 37 0 4 1004 496 272 48 0 chr4 55034985 55035009 -100595111 - RSINE1 SINE B4 -8 157 134 4 1004 405 0 0 0 chr4 55035009 55035054 -100595066 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1004 496 272 48 0 chr4 55035054 55035176 -100594944 - RSINE1 SINE B4 -32 133 5 4 1004 243 189 0 0 chr4 55035226 55035279 -100594841 + CT-rich Low_complexity Low_complexity 4 56 0 4 1004 256 307 45 52 chr4 55037386 55037520 -100592600 + MIRb SINE MIR 123 255 -13 4 1004 234 0 0 0 chr4 55038085 55038111 -100592009 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1004 231 0 0 71 chr4 55040310 55040352 -100589768 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1004 351 276 19 19 chr4 55040359 55040466 -100589654 - B1F1 SINE Alu -40 109 3 4 1004 340 219 0 52 chr4 55044543 55044620 -100585500 + B3A SINE B2 1 73 -125 4 1004 21 57 0 0 chr4 55044833 55044868 -100585252 + AT_rich Low_complexity Low_complexity 1 35 0 5 1004 210 256 108 32 chr4 55045258 55045351 -100584769 + L3 LINE CR1 3639 3738 -751 5 1004 221 286 108 8 chr4 55045410 55045530 -100584590 + L2c LINE L2 3248 3379 -8 5 1004 333 145 0 0 chr4 55045817 55045879 -100584241 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 5 1004 504 0 0 0 chr4 55045882 55045938 -100584182 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1004 1859 149 190 8 chr4 55046427 55046780 -100583340 - MTC LTR MaLR -4 417 1 5 1004 299 196 0 0 chr4 55047630 55047686 -100582434 - B1F SINE Alu -93 56 1 5 1004 227 257 120 13 chr4 55048629 55048704 -100581416 + MIRb SINE MIR 117 199 -69 5 1004 441 0 0 0 chr4 55048844 55048893 -100581227 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1004 650 203 0 36 chr4 55049414 55049552 -100580568 - B1_Mur1 SINE Alu -16 133 1 5 1004 197 0 0 67 chr4 55050027 55050057 -100580063 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1005 282 56 0 0 chr4 55050910 55050946 -100579174 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1005 674 186 30 23 chr4 55052377 55052509 -100577611 - B1_Mur3 SINE Alu -16 133 1 6 1005 208 168 52 16 chr4 55052753 55052814 -100577306 + MIRc SINE MIR 118 186 -76 6 1005 1330 189 26 0 chr4 55056166 55056431 -100573689 - ORR1C1 LTR MaLR -106 272 1 6 1005 26 30 0 0 chr4 55056698 55056731 -100573389 + AT_rich Low_complexity Low_complexity 1 33 0 6 1005 836 121 71 0 chr4 55056798 55056938 -100573182 + B1_Mur4 SINE Alu 1 150 0 6 1005 554 165 1 10 chr4 55057046 55057161 -100572959 + MTC LTR MaLR 1 115 -304 6 1005 319 277 0 109 chr4 55058013 55058147 -100571973 - B1F2 SINE Alu 0 120 1 6 1005 311 284 0 50 chr4 55058337 55058437 -100571683 - B3A SINE B2 -103 95 1 6 1005 410 53 18 0 chr4 55058468 55058525 -100571595 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1005 446 306 82 0 chr4 55058547 55058694 -100571426 - B3A SINE B2 -38 160 2 7 1005 195 325 136 45 chr4 55059003 55059135 -100570985 + L2c LINE L2 3242 3385 -2 7 1005 448 257 76 0 chr4 55060077 55060182 -100569938 - B1_Mur2 SINE Alu -5 144 32 7 1005 24 0 0 0 chr4 55062072 55062096 -100568024 + AT_rich Low_complexity Low_complexity 1 24 0 7 1005 229 292 32 53 chr4 55062520 55062614 -100567506 + L1MA9 LINE L1 6133 6224 -88 7 1005 414 224 271 19 chr4 55062682 55062837 -100567283 - B4A SINE B4 -31 261 68 7 1005 359 217 41 52 chr4 55064849 55064946 -100565174 - PB1D10 SINE Alu -1 116 21 7 1005 251 324 0 0 chr4 55065132 55065206 -100564914 + CT-rich Low_complexity Low_complexity 2 75 0 7 1005 366 307 30 30 chr4 55066880 55067048 -100563072 - MIRb SINE MIR -91 177 10 7 1005 333 258 160 45 chr4 55068058 55068302 -100561818 - MLT1C LTR MaLR -188 279 8 8 1005 211 309 0 0 chr4 55069294 55069349 -100560771 + CT-rich Low_complexity Low_complexity 2 56 0 8 1005 395 221 137 0 chr4 55069358 55069453 -100560667 - B1F SINE Alu -8 141 34 8 1005 30 27 0 0 chr4 55070221 55070258 -100559862 + AT_rich Low_complexity Low_complexity 1 37 0 8 1005 297 304 0 35 chr4 55070580 55070696 -100559424 + L3b LINE CR1 123 234 -248 8 1005 459 286 100 40 chr4 55070953 55071153 -100558967 + MER20 DNA MER1_type 6 217 -2 8 1005 21 36 0 0 chr4 55071347 55071375 -100558745 + AT_rich Low_complexity Low_complexity 1 28 0 8 1005 298 269 0 0 chr4 55072328 55072395 -100557725 + ID4 SINE ID 4 70 -13 8 1005 333 241 167 49 chr4 55073441 55073585 -100556535 - MER58B DNA MER1_type -5 336 176 8 1005 297 285 99 45 chr4 55074914 55075116 -100555004 - Tigger8 DNA MER2_type -179 487 275 8 1005 732 318 132 29 chr4 55075325 55076045 -100554075 + L1M5 LINE L1 4146 4939 -1207 9 1005 2033 83 19 9 chr4 55076274 55076614 -100553506 + ORR1A2 LTR MaLR 11 346 0 9 1005 205 194 0 0 chr4 55076662 55076698 -100553422 - MIRm SINE MIR -10 266 231 9 1005 433 280 68 60 chr4 55076758 55077024 -100553096 + L1M5 LINE L1 5369 5637 -531 9 1005 1864 199 18 51 chr4 55077024 55077415 -100552705 - ORR1C1 LTR MaLR 0 378 1 9 1005 236 273 73 78 chr4 55077415 55077438 -100552682 + L1M5 LINE L1 5638 5665 -503 9 1005 346 315 158 27 chr4 55077449 55077719 -100552401 + L1ME1 LINE L1 5789 6104 -75 9 1005 1097 119 11 0 chr4 55077719 55077896 -100552224 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 9 1005 346 315 158 27 chr4 55077896 55077955 -100552165 + L1ME1 LINE L1 6105 6161 -18 9 1005 471 48 0 0 chr4 55079101 55079163 -100550957 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1005 234 91 0 0 chr4 55080215 55080248 -100549872 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1005 255 31 0 0 chr4 55080698 55080730 -100549390 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9 1005 631 118 76 30 chr4 55080732 55080873 -100549247 - B1_Mur4 SINE Alu -1 149 6 9 1005 1005 163 95 20 chr4 55081071 55081271 -100548849 - B3 SINE B2 -1 215 1 1 1005 1151 68 0 7 chr4 55082075 55082223 -100547897 - B1_Mus2 SINE Alu 0 147 1 1 1005 764 274 110 8 chr4 55083579 55083833 -100546287 - B4A SINE B4 -12 280 1 1 1005 186 257 13 67 chr4 55084742 55084817 -100545303 + L2c LINE L2 3266 3336 -51 1 1005 201 74 0 0 chr4 55085088 55085115 -100545005 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1005 225 0 0 0 chr4 55085726 55085751 -100544369 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1005 21 0 0 0 chr4 55086216 55086237 -100543883 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 589 255 32 30 chr4 55086699 55086886 -100543234 + B3A SINE B2 2 177 -18 1 1005 1789 273 123 53 chr4 55087267 55088736 -100541384 - L1MA8 LINE L1 -53 6238 4651 1 1005 732 23 0 0 chr4 55089376 55089462 -100540658 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1 1005 482 302 46 26 chr4 55091359 55091512 -100538608 - RSINE1 SINE B4 -7 158 3 1 1005 375 285 99 50 chr4 55093224 55093405 -100536715 + B4 SINE B4 50 239 -53 1 1005 254 271 0 2 chr4 55093439 55093524 -100536596 - ID_B1 SINE B4 -76 148 69 1 1005 203 175 0 0 chr4 55094202 55094242 -100535878 + A-rich Low_complexity Low_complexity 1 40 0 1 1005 21 71 0 0 chr4 55094456 55094498 -100535622 + AT_rich Low_complexity Low_complexity 1 42 0 1 1005 237 65 0 0 chr4 55094769 55094800 -100535320 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1005 21 0 0 0 chr4 55095206 55095227 -100534893 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 284 274 0 0 chr4 55095334 55095407 -100534713 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1005 223 163 0 39 chr4 55095426 55095477 -100534643 + T-rich Low_complexity Low_complexity 5 53 0 1 1005 250 67 0 43 chr4 55095630 55095677 -100534443 + (TTTTTA)n Simple_repeat Simple_repeat 2 46 0 1 1005 200 59 29 0 chr4 55096317 55096351 -100533769 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1005 318 271 148 9 chr4 55097837 55097945 -100532175 + B1_Mur1 SINE Alu 11 133 -16 1 1005 1259 0 0 14 chr4 55097947 55098095 -100532025 + (TAGA)n Simple_repeat Simple_repeat 3 148 0 1 1005 367 279 45 23 chr4 55098994 55099126 -100530994 + RSINE1 SINE B4 3 137 -28 1 1005 718 200 32 65 chr4 55099160 55099315 -100530805 + B1_Mur4 SINE Alu 1 150 0 1 1005 542 41 14 0 chr4 55099319 55099392 -100530728 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1 1005 21 57 0 0 chr4 55099392 55099427 -100530693 + AT_rich Low_complexity Low_complexity 1 35 0 1 1005 582 214 93 23 chr4 55099846 55099975 -100530145 - B1_Mur2 SINE Alu -10 139 2 1 1005 1381 81 5 0 chr4 55099984 55100169 -100529951 - B2_Mm1t SINE B2 -6 187 2 1 1005 222 140 60 0 chr4 55100191 55100241 -100529879 + T-rich Low_complexity Low_complexity 3 55 0 1 1005 274 280 150 62 chr4 55100331 55100491 -100529629 - MLT1C LTR MaLR -4 463 290 1 1005 775 121 14 0 chr4 55100566 55100706 -100529414 + (TC)n Simple_repeat Simple_repeat 1 142 0 1 1005 695 214 24 30 chr4 55102277 55102441 -100527679 + MTE2b LTR MaLR 1 163 -216 1 1005 422 155 14 0 chr4 55102596 55102667 -100527453 - B3A SINE B2 -126 72 1 1 1005 534 324 91 22 chr4 55102906 55103225 -100526895 + MER2 DNA MER2_type 2 342 -3 1 1005 867 85 0 0 chr4 55103463 55103593 -100526527 + (TC)n Simple_repeat Simple_repeat 2 131 0 1 1005 419 268 53 5 chr4 55103604 55103725 -100526395 - B1F SINE Alu -8 141 19 1 1005 196 286 0 0 chr4 55103869 55103918 -100526202 + L2b LINE L2 3104 3152 -223 1 1005 5663 33 6 10 chr4 55104114 55104787 -100525333 + L1Md_F2 LINE L1 5911 6580 -2 1 1005 302 274 0 0 chr4 55104968 55105030 -100525090 + RSINE1 SINE B4 87 148 -17 1 1005 210 72 70 23 chr4 55105038 55105081 -100525039 + C-rich Low_complexity Low_complexity 2 46 0 1 1005 1979 179 70 13 chr4 55105082 55105455 -100524665 + ORR1B1 LTR MaLR 1 394 0 1 1005 186 43 0 0 chr4 55105782 55105805 -100524315 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1005 525 283 18 36 chr4 55105858 55106023 -100524097 + RSINE1 SINE B4 4 165 0 1 1005 558 0 0 0 chr4 55106204 55106266 -100523854 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1005 1171 55 7 0 chr4 55106367 55106512 -100523608 + B1_Mm SINE Alu 2 147 0 1 1005 541 231 10 0 chr4 55107264 55107368 -100522752 + PB1D9 SINE Alu 1 105 -15 1 1005 2267 140 6 11 chr4 55107368 55107715 -100522405 + ORR1A1 LTR MaLR 2 346 0 1 1005 237 65 0 0 chr4 55107757 55107788 -100522332 + (CAAAG)n Simple_repeat Simple_repeat 3 33 0 1 1005 394 291 64 0 chr4 55107808 55107918 -100522202 - RSINE1 SINE B4 -45 120 4 1 1005 371 268 245 13 chr4 55108348 55108507 -100521613 - ID_B1 SINE B4 -6 218 23 1 1005 1118 285 40 0 chr4 55108999 55109322 -100520798 + MTEa LTR MaLR 1 336 -43 1 1005 630 256 44 44 chr4 55109449 55109463 -100520657 - B3 SINE B2 0 216 202 1 1005 276 30 0 0 chr4 55109463 55109496 -100520624 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1005 630 256 44 44 chr4 55109496 55109521 -100520599 - B3 SINE B2 -15 201 180 1 1005 1212 88 0 0 chr4 55109521 55109692 -100520428 + (TC)n Simple_repeat Simple_repeat 2 172 0 1 1005 790 227 25 0 chr4 55109692 55109855 -100520265 - B3A SINE B2 -19 179 13 1 1005 716 232 26 0 chr4 55110655 55110810 -100519310 - ID_B1 SINE B4 -2 222 64 1 1005 304 261 125 9 chr4 55110874 55110986 -100519134 + MIRb SINE MIR 108 232 -36 1 1005 300 111 0 0 chr4 55112136 55112181 -100517939 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 1005 1249 97 16 16 chr4 55112588 55112777 -100517343 - B2_Mm2 SINE B2 -5 190 2 1 1005 438 20 0 0 chr4 55113127 55113178 -100516942 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1005 349 308 51 8 chr4 55113218 55113336 -100516784 - RSINE1 SINE B4 -40 125 3 1 1005 242 415 56 0 chr4 55114004 55114146 -100515974 + LTR16A LTR ERVL 124 273 -178 1 1005 504 0 0 0 chr4 55114452 55114508 -100515612 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1005 416 265 137 5 chr4 55114754 55114951 -100515169 - ID_B1 SINE B4 0 224 2 1 1005 277 225 52 22 chr4 55115218 55115320 -100514800 + B1F SINE Alu 20 128 -21 1 1005 180 0 0 0 chr4 55115359 55115379 -100514741 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1005 1004 219 71 77 chr4 55115732 55116156 -100513964 + MTE2a LTR MaLR 8 419 0 1 1005 4745 164 73 18 chr4 55116173 55116587 -100513533 + RLTR25B LTR ERVK 1 439 -589 1 1005 345 24 0 0 chr4 55116587 55116629 -100513491 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 1 1005 4745 164 73 18 chr4 55116629 55117188 -100512932 + RLTR25B LTR ERVK 440 1027 -1 1 1005 235 324 70 26 chr4 55117430 55117544 -100512576 + MLT1H2 LTR MaLR 334 452 -37 1 1005 233 306 114 6 chr4 55117585 55117743 -100512377 + MamRep605 Unknown Unknown 320 494 -382 1 1005 372 94 0 0 chr4 55117814 55117867 -100512253 + (GAA)n Simple_repeat Simple_repeat 2 54 0 1 1005 2795 68 2 10 chr4 55118316 55118717 -100511403 + MTB LTR MaLR 3 400 0 1 1005 387 63 16 16 chr4 55118791 55118855 -100511265 + MTC LTR MaLR 358 421 0 1 1005 5607 145 53 11 chr4 55118854 55119892 -100510228 + MTC-int LTR MaLR 2 1083 -175 1 1005 820 177 7 33 chr4 55119935 55119949 -100510171 - B1_Mur3 SINE Alu -1 148 138 1 1005 1284 75 0 0 chr4 55119949 55120161 -100509959 + (TTTTC)n Simple_repeat Simple_repeat 1 212 0 1 1005 820 177 7 33 chr4 55120161 55120297 -100509823 - B1_Mur3 SINE Alu -12 137 2 1 1005 837 121 55 28 chr4 55120338 55120483 -100509637 - B1_Mur3 SINE Alu 0 149 1 1 1005 903 119 22 11 chr4 55120488 55120666 -100509454 + MTC-int LTR MaLR 1079 1258 0 1 1005 2366 129 108 3 chr4 55120666 55121047 -100509073 + MTC LTR MaLR 1 421 0 1 1005 368 239 79 7 chr4 55121047 55121186 -100508934 + L1M5 LINE L1 5507 5655 -509 1 1005 300 27 0 0 chr4 55121302 55121339 -100508781 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1005 704 190 0 35 chr4 55121667 55121809 -100508311 + B1_Mus2 SINE Alu 11 147 0 1 1005 186 43 0 0 chr4 55121836 55121859 -100508261 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1 1005 765 99 104 13 chr4 55122051 55122205 -100507915 + URR1A DNA MER1_type 59 226 0 1 1005 255 270 0 0 chr4 55122253 55122316 -100507804 - ID4_ SINE ID -4 79 17 1 1005 696 12 0 0 chr4 55122749 55122830 -100507290 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1005 221 0 35 0 chr4 55123306 55123335 -100506785 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1005 346 336 17 0 chr4 55123858 55123977 -100506143 - MER5A DNA MER1_type -23 166 46 1 1005 231 114 0 0 chr4 55123978 55124013 -100506107 + (CTG)n Simple_repeat Simple_repeat 2 36 0 1 1005 866 266 39 5 chr4 55124733 55124941 -100505179 - ID_B1 SINE B4 -8 216 2 1 1005 243 175 158 0 chr4 55125475 55125532 -100504588 - ID_B1 SINE B4 -80 144 79 1 1005 366 253 23 11 chr4 55125752 55125840 -100504280 + PB1D10 SINE Alu 1 89 -28 1 1005 351 284 37 15 chr4 55125840 55125888 -100504232 + ID_B1 SINE B4 82 220 -4 1 1005 33 43 0 0 chr4 55127215 55127262 -100502858 + AT_rich Low_complexity Low_complexity 1 47 0 1 1005 320 0 25 0 chr4 55127422 55127462 -100502658 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1005 1147 201 28 14 chr4 55127671 55127883 -100502237 - B3 SINE B2 -1 215 1 1 1005 976 166 193 0 chr4 55127916 55128097 -100502023 - B3 SINE B2 0 216 1 1 1005 1293 262 102 35 chr4 55128103 55128598 -100501522 - L1M2 LINE L1 -566 5734 5230 1 1005 427 272 103 0 chr4 55128865 55129001 -100501119 + ID_B1 SINE B4 74 223 -1 1 1005 748 251 45 5 chr4 55129170 55129370 -100500750 + Lx7 LINE L1 6949 7156 -540 1 1005 336 171 0 0 chr4 55131243 55131325 -100498795 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 1 1005 555 16 0 0 chr4 55131337 55131401 -100498719 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1005 2052 171 74 10 chr4 55131427 55131818 -100498302 + MTC LTR MaLR 1 416 -5 2 1005 1170 48 0 7 chr4 55131820 55131953 -100498167 + B1_Mus2 SINE Alu 2 134 -13 2 1005 316 38 57 0 chr4 55131953 55132006 -100498114 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 2 1005 1170 48 0 7 chr4 55132006 55132019 -100498101 + B1_Mus2 SINE Alu 135 147 0 2 1005 261 0 0 0 chr4 55132609 55132638 -100497482 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1005 937 243 36 11 chr4 55133380 55133655 -100496465 - MER58B DNA MER1_type -17 324 43 2 1005 462 235 104 22 chr4 55134150 55134285 -100495835 + B1F SINE Alu 3 148 -1 2 1005 613 231 31 0 chr4 55134365 55134495 -100495625 + B1F SINE Alu 1 134 -15 2 1005 23 0 0 0 chr4 55134495 55134518 -100495602 + AT_rich Low_complexity Low_complexity 1 23 0 2 1005 1369 71 5 42 chr4 55134528 55134720 -100495400 + B2_Mm1a SINE B2 2 186 -7 2 1005 338 372 18 0 chr4 55136123 55136236 -100493884 + B1F SINE Alu 6 120 -29 2 1005 856 255 9 22 chr4 55136252 55136477 -100493643 + ID_B1 SINE B4 2 223 -1 2 1005 271 164 0 18 chr4 55137087 55137143 -100492977 + Charlie12 DNA MER1_type 48 102 -2771 2 1005 254 291 44 44 chr4 55137198 55137288 -100492832 + B3 SINE B2 97 186 -30 2 1005 436 184 50 58 chr4 55137466 55137587 -100492533 - RSINE1 SINE B4 -36 129 10 2 1005 330 303 0 29 chr4 55137575 55137677 -100492443 - RMER30 DNA MER1_type -96 106 8 2 1005 195 265 45 57 chr4 55137695 55137783 -100492337 - MIRc SINE MIR -117 151 65 2 1005 524 234 42 21 chr4 55139044 55139188 -100490932 + B1F1 SINE Alu 3 149 0 2 1005 180 97 0 0 chr4 55139190 55139221 -100490899 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1005 745 261 12 167 chr4 55139221 55139277 -100490843 + B4A SINE B4 5 41 -251 2 1005 1184 35 7 14 chr4 55139277 55139422 -100490698 + B1_Mus2 SINE Alu 2 145 -2 2 1005 745 261 12 167 chr4 55139422 55139595 -100490525 + B4A SINE B4 42 203 -89 2 1005 888 234 71 0 chr4 55139595 55139792 -100490328 + B3 SINE B2 2 212 -4 2 1005 745 261 12 167 chr4 55139792 55139902 -100490218 + B4A SINE B4 204 292 0 2 1005 225 324 28 0 chr4 55140327 55140398 -100489722 - MER5A DNA MER1_type -15 174 102 2 1005 557 254 136 67 chr4 55140408 55140724 -100489396 + ORR1E LTR MaLR 3 340 -19 2 1005 658 273 75 38 chr4 55141046 55141259 -100488861 - MER58A DNA MER1_type 0 224 4 2 1005 207 295 63 0 chr4 55141747 55141842 -100488278 - MIRb SINE MIR -28 240 140 2 1005 203 333 44 0 chr4 55142081 55142171 -100487949 - MIR SINE MIR -11 251 158 2 1005 468 0 0 0 chr4 55142177 55142229 -100487891 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2 1005 1074 79 22 0 chr4 55142231 55142370 -100487750 - B1_Mus1 SINE Alu -5 143 2 2 1005 1515 28 0 9 chr4 55142370 55142587 -100487533 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 2 1005 274 231 28 90 chr4 55142615 55142724 -100487396 - MIR SINE MIR -54 154 50 2 1005 1141 262 95 34 chr4 55143200 55143606 -100486514 - MTD LTR MaLR -30 389 1 2 1005 323 330 55 32 chr4 55144330 55144549 -100485571 - MLT1K LTR MaLR -3 592 369 2 1005 236 293 55 87 chr4 55145215 55145342 -100484778 - L2b LINE L2 -2 3385 3253 2 1005 868 129 70 28 chr4 55145355 55145498 -100484622 - B1_Mur2 SINE Alu 0 149 1 2 1005 219 293 77 70 chr4 55145540 55145683 -100484437 + MIRb SINE MIR 52 195 -73 2 1005 234 0 0 0 chr4 55146639 55146665 -100483455 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1005 243 88 0 0 chr4 55146693 55146727 -100483393 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1005 714 175 8 0 chr4 55146745 55146865 -100483255 - B3 SINE B2 -94 122 2 2 1005 1816 160 139 85 chr4 55147778 55148201 -100481919 + RLTR41 LTR ERV1 1 446 0 2 1005 231 236 181 11 chr4 55148256 55148350 -100481770 - MLT1A0 LTR MaLR -221 144 35 2 1005 25 31 0 0 chr4 55149694 55149726 -100480394 + AT_rich Low_complexity Low_complexity 1 32 0 2 1005 404 279 64 19 chr4 55149887 55150044 -100480076 - B4A SINE B4 -126 166 3 2 1005 389 54 18 0 chr4 55150427 55150483 -100479637 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1005 786 237 15 40 chr4 55150723 55150925 -100479195 + B3 SINE B2 3 199 -17 2 1005 198 167 0 0 chr4 55150931 55150967 -100479153 + GA-rich Low_complexity Low_complexity 2 37 0 2 1005 340 379 149 23 chr4 55150970 55151278 -100478842 - LTR16A LTR ERVL -94 357 11 2 1005 784 177 50 0 chr4 55151665 55151806 -100478314 + B1_Mus1 SINE Alu 1 148 0 2 1005 2293 87 22 0 chr4 55152107 55152429 -100477691 - ORR1A4 LTR MaLR 0 329 1 2 1005 237 207 48 12 chr4 55152723 55152806 -100477314 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 2 1005 361 294 37 99 chr4 55153439 55153601 -100476519 + B4 SINE B4 70 221 -71 2 1005 882 138 0 0 chr4 55153468 55153606 -100476514 + B1_Mus2 SINE Alu 10 147 0 2 1005 599 250 122 48 chr4 55154401 55154590 -100475530 + ID_B1 SINE B4 1 203 -21 2 1005 309 253 25 0 chr4 55154707 55154786 -100475334 - MER58D DNA MER1_type -1 385 305 2 1005 1125 76 14 0 chr4 55155829 55155974 -100474146 + B1_Mus1 SINE Alu 2 148 0 2 1005 273 325 46 31 chr4 55156501 55156631 -100473489 - MamGyp-int LTR Gypsy -25 5037 4906 2 1005 336 288 35 28 chr4 55157074 55157217 -100472903 - MIR SINE MIR -10 252 109 2 1005 441 0 0 0 chr4 55160076 55160125 -100469995 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1005 351 0 0 0 chr4 55160303 55160342 -100469778 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 1005 1194 64 0 0 chr4 55160342 55160499 -100469621 - B2_Mm2 SINE B2 -38 157 1 2 1005 229 211 0 0 chr4 55160757 55160809 -100469311 - ID_B1 SINE B4 -18 206 155 2 1005 760 225 59 0 chr4 55161171 55161340 -100468780 - MLT1B LTR MaLR 0 390 212 2 1005 189 0 0 0 chr4 55161797 55161818 -100468302 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 1005 339 238 12 12 chr4 55162042 55162127 -100467993 - MLT1B LTR MaLR -2 388 304 2 1005 532 243 99 53 chr4 55162166 55162318 -100467802 + RMER30 DNA MER1_type 9 167 -35 2 1005 1100 276 46 80 chr4 55162382 55162631 -100467489 + MTE2a LTR MaLR 4 244 -135 2 1005 1011 122 0 7 chr4 55162631 55162780 -100467340 - B1_Mus1 SINE Alu 0 148 1 2 1005 1100 276 46 80 chr4 55162780 55162919 -100467201 + MTE2a LTR MaLR 245 379 0 2 1005 2720 27 0 0 chr4 55163029 55163367 -100466753 - ORR1A1 LTR MaLR -8 338 1 2 1005 291 333 0 19 chr4 55163367 55163474 -100466646 - MLT1B LTR MaLR -328 139 35 2 1005 22 0 0 0 chr4 55163655 55163677 -100466443 + AT_rich Low_complexity Low_complexity 1 22 0 2 1005 230 53 0 73 chr4 55163769 55163810 -100466310 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1005 798 261 19 5 chr4 55164245 55164461 -100465659 - ID_B1 SINE B4 -2 222 4 2 1005 265 281 197 8 chr4 55164548 55164670 -100465450 - RSINE1 SINE B4 -17 148 4 2 1005 237 306 20 10 chr4 55164804 55164903 -100465217 + CT-rich Low_complexity Low_complexity 3 102 0 2 1005 2056 146 3 12 chr4 55165515 55165855 -100464265 - MTC LTR MaLR -8 413 77 2 1005 565 248 0 0 chr4 55165855 55165964 -100464156 - Lx8 LINE L1 -348 7125 7017 2 1005 252 305 0 47 chr4 55166954 55167040 -100463080 + ID4 SINE ID 2 83 0 2 1005 1096 69 14 0 chr4 55168830 55168974 -100461146 - B1_Mus1 SINE Alu -1 147 2 2 1005 254 327 80 26 chr4 55168974 55169087 -100461033 + MLT1L LTR MaLR 489 607 -3 2 1005 435 368 119 32 chr4 55169119 55169498 -100460622 - MLT1G3 LTR MaLR 0 595 184 2 1005 1080 70 14 7 chr4 55169508 55169652 -100460468 + B1_Mus1 SINE Alu 4 148 0 2 1005 564 150 0 0 chr4 55169652 55169765 -100460355 + A-rich Low_complexity Low_complexity 1 113 0 2 1005 555 231 52 129 chr4 55170211 55170405 -100459715 - B3 SINE B2 -2 193 15 2 1005 486 0 0 0 chr4 55170931 55170985 -100459135 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1005 966 84 135 94 chr4 55170987 55171157 -100458963 - B2_Mm2 SINE B2 -18 177 1 2 1005 896 255 37 8 chr4 55171886 55172127 -100457993 + L1MD1 LINE L1 15 262 -6371 2 1005 29 28 0 0 chr4 55172413 55172449 -100457671 + AT_rich Low_complexity Low_complexity 1 36 0 2 1005 336 214 0 0 chr4 55172545 55172718 -100457402 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 2 1005 270 294 0 0 chr4 55172719 55172811 -100457309 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1005 764 291 18 50 chr4 55172842 55173121 -100456999 - Lx7 LINE L1 -359 7337 7068 2 1005 766 266 155 6 chr4 55173181 55173522 -100456598 + L1MD1 LINE L1 2519 2910 -3627 2 1005 302 233 78 42 chr4 55173542 55173708 -100456412 + L1MD1 LINE L1 2856 3027 -3510 2 1005 249 198 0 0 chr4 55173732 55173818 -100456302 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1005 1072 249 87 38 chr4 55173818 55174289 -100455831 + L1MD1 LINE L1 3009 3502 -3035 2 1005 231 105 26 0 chr4 55174289 55174325 -100455795 + B3 SINE B2 1 37 -179 2 1005 1746 148 34 54 chr4 55174325 55174496 -100455624 - ORR1B1 LTR MaLR -3 391 227 2 1005 315 0 0 0 chr4 55174496 55174531 -100455589 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1005 1115 59 7 0 chr4 55174531 55174666 -100455454 - B1_Mm SINE Alu -10 137 2 2 1005 1746 148 34 54 chr4 55174666 55174844 -100455276 - ORR1B1 LTR MaLR -168 226 49 2 1005 1014 252 130 21 chr4 55175280 55175750 -100454370 + L1MD1 LINE L1 3826 4346 -2191 2 1005 453 239 44 42 chr4 55176702 55176910 -100453210 + L1MA4 LINE L1 5707 5939 -250 2 1005 726 79 0 0 chr4 55177134 55177235 -100452885 + B2_Mm2 SINE B2 2 102 -93 2 1005 405 0 0 0 chr4 55177258 55177303 -100452817 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 1005 343 251 85 95 chr4 55177312 55177521 -100452599 + L1MD1 LINE L1 4337 4535 -2002 2 1005 978 149 189 22 chr4 55177521 55177706 -100452414 + B3 SINE B2 1 216 0 2 1005 343 259 105 122 chr4 55177706 55177801 -100452319 + L1MD1 LINE L1 4536 4629 -1908 2 1005 540 0 0 0 chr4 55177884 55177944 -100452176 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2 1005 659 257 11 27 chr4 55177955 55178139 -100451981 - B3A SINE B2 -16 182 2 2 1005 540 0 0 0 chr4 55178159 55178219 -100451901 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1005 739 132 38 15 chr4 55178219 55178342 -100451778 - B1_Mur1 SINE Alu -12 137 11 2 1005 529 261 36 41 chr4 55178342 55178429 -100451691 - ID_B1 SINE B4 -12 212 3 3 1005 573 305 125 4 chr4 55178431 55178711 -100451409 + L1MD1 LINE L1 4712 5025 -1512 2 1005 434 231 135 0 chr4 55178729 55178833 -100451287 - B1_Mur1 SINE Alu -27 122 5 3 1005 345 227 80 30 chr4 55178747 55178847 -100451273 - MT2B LTR ERVL -344 257 153 3 1005 2090 274 95 47 chr4 55178847 55179599 -100450521 + L1MD1 LINE L1 5298 6086 -547 2 1005 1773 154 131 34 chr4 55179599 55179981 -100450139 + MTD LTR MaLR 1 419 0 3 1005 2090 245 88 40 chr4 55179981 55180278 -100449842 + L1MD1 LINE L1 6087 6412 -221 2 1005 221 109 0 21 chr4 55180538 55180585 -100449535 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1005 583 190 8 17 chr4 55181057 55181175 -100448945 - PB1D7 SINE Alu -1 119 3 3 1006 639 226 0 2 chr4 55181337 55181781 -100448339 + (TG)n Simple_repeat Simple_repeat 1 443 0 3 1006 486 0 0 0 chr4 55181781 55181835 -100448285 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1006 407 233 0 6 chr4 55181835 55181845 -100448275 + (TG)n Simple_repeat Simple_repeat 2 11 0 3 1006 895 264 59 73 chr4 55181847 55182133 -100447987 + B4 SINE B4 11 292 0 3 1006 234 0 0 0 chr4 55183571 55183597 -100446523 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1006 669 13 0 0 chr4 55183597 55183674 -100446446 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1006 294 278 64 9 chr4 55183679 55183788 -100446332 - L4 LINE RTE -177 1852 1738 3 1006 337 287 10 10 chr4 55184256 55184358 -100445762 + PB1D10 SINE Alu 14 115 -2 3 1006 451 295 33 0 chr4 55184382 55184504 -100445616 + ID_B1 SINE B4 86 211 -13 3 1006 756 0 0 0 chr4 55184504 55184588 -100445532 + (CAAAA)n Simple_repeat Simple_repeat 2 85 0 3 1006 188 320 60 30 chr4 55185138 55185238 -100444882 + L2b LINE L2 3272 3374 -1 3 1006 441 323 86 95 chr4 55185620 55185979 -100444141 - ORR1E LTR MaLR 0 359 4 3 1006 206 246 30 15 chr4 55186043 55186109 -100444011 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1006 337 331 145 52 chr4 55186133 55186382 -100443738 - B4 SINE B4 -20 272 1 3 1006 548 240 13 27 chr4 55186411 55186561 -100443559 + B1F SINE Alu 1 148 -1 3 1006 210 340 120 0 chr4 55187256 55187356 -100442764 - MIR SINE MIR -119 143 32 3 1006 180 0 0 0 chr4 55187436 55187456 -100442664 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 1006 796 145 0 0 chr4 55187465 55187589 -100442531 - B1_Mus1 SINE Alu -16 132 9 3 1006 207 283 0 32 chr4 55187974 55188036 -100442084 + MIRb SINE MIR 114 173 -95 3 1006 264 295 135 32 chr4 55189445 55189571 -100440549 + MIRb SINE MIR 87 225 -43 3 1006 441 266 0 52 chr4 55189703 55189818 -100440302 + B1F2 SINE Alu 35 143 -6 3 1006 205 271 17 0 chr4 55189824 55189883 -100440237 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 3 1006 626 271 77 0 chr4 55189978 55190159 -100439961 - ID_B1 SINE B4 -23 201 7 3 1006 1110 237 32 14 chr4 55190568 55190850 -100439270 - MTD LTR MaLR -132 287 1 3 1006 343 321 36 22 chr4 55191650 55191787 -100438333 + B4A SINE B4 115 253 -39 3 1006 219 227 30 15 chr4 55191823 55191890 -100438230 + (CATA)n Simple_repeat Simple_repeat 4 71 0 3 1006 341 289 118 0 chr4 55192987 55193122 -100436998 - MLT1L LTR MaLR -305 305 155 3 1006 950 224 14 40 chr4 55193609 55193832 -100436288 + ID_B1 SINE B4 1 217 -7 3 1006 1174 81 0 0 chr4 55193844 55193992 -100436128 + B1_Mus1 SINE Alu 1 148 0 3 1006 530 285 0 28 chr4 55194335 55194476 -100435644 + B1F2 SINE Alu 1 137 -12 3 1006 222 37 0 0 chr4 55194484 55194511 -100435609 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 3 1006 214 296 46 39 chr4 55196014 55196144 -100433976 + MIRb SINE MIR 130 260 -8 3 1006 401 270 40 0 chr4 55197088 55197188 -100432932 - ID_B1 SINE B4 -28 196 93 3 1006 1842 204 49 8 chr4 55198028 55198414 -100431706 + MTC LTR MaLR 9 410 -11 3 1006 422 229 81 37 chr4 55198887 55199023 -100431097 + B1F1 SINE Alu 8 149 0 3 1006 221 75 0 24 chr4 55199023 55199064 -100431056 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1006 530 121 26 8 chr4 55199143 55199260 -100430860 + (TG)n Simple_repeat Simple_repeat 2 120 0 3 1006 315 303 18 18 chr4 55199357 55199468 -100430652 - B4A SINE B4 -2 290 180 3 1006 270 286 75 21 chr4 55199471 55199564 -100430556 + MTD LTR MaLR 81 178 -241 3 1006 343 264 175 1 chr4 55199561 55199700 -100430420 - B4A SINE B4 -132 160 1 3 1006 471 206 78 10 chr4 55199706 55199809 -100430311 - PB1D10 SINE Alu -7 110 1 3 1006 528 16 0 0 chr4 55200441 55200502 -100429618 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1006 447 19 0 0 chr4 55200502 55200553 -100429567 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1006 441 0 0 0 chr4 55201043 55201092 -100429028 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1006 265 378 28 7 chr4 55201413 55201557 -100428563 + MIRb SINE MIR 46 192 -76 3 1006 185 409 0 11 chr4 55203187 55203281 -100426839 + L2 LINE L2 2786 2878 -541 3 1006 409 279 177 48 chr4 55204206 55204455 -100425665 - MLT1F LTR MaLR -162 386 106 3 1006 779 310 13 40 chr4 55204590 55204889 -100425231 + B4A SINE B4 2 292 0 3 1006 574 178 16 0 chr4 55204900 55205029 -100425091 + (TA)n Simple_repeat Simple_repeat 1 131 0 3 1006 224 151 80 23 chr4 55205044 55205132 -100424988 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1006 880 246 39 0 chr4 55205629 55205836 -100424284 - B3 SINE B2 -1 215 1 3 1006 561 233 20 27 chr4 55205887 55206037 -100424083 - B1_Mur3 SINE Alu 0 149 1 3 1006 796 127 32 36 chr4 55206730 55206911 -100423209 + B3 SINE B2 15 190 -5 3 1006 1120 261 81 5 chr4 55208131 55208467 -100421653 - L1MB1 LINE L1 -16 6152 5794 3 1006 480 281 53 111 chr4 55208639 55208847 -100421273 - B3A SINE B2 -2 196 1 3 1006 228 237 34 0 chr4 55209012 55209071 -100421049 - L1MC LINE L1 -2075 5807 5747 3 1006 292 308 73 24 chr4 55209509 55209632 -100420488 + MIRb SINE MIR 17 145 -123 3 1006 513 286 82 15 chr4 55209658 55209864 -100420256 - MTD LTR MaLR -192 227 8 3 1006 1223 41 0 0 chr4 55209917 55210063 -100420057 + B1_Mus2 SINE Alu 2 147 0 3 1006 204 125 0 0 chr4 55210063 55210095 -100420025 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1006 473 327 18 6 chr4 55211187 55211350 -100418770 + B4A SINE B4 3 167 -125 3 1006 227 208 19 0 chr4 55211873 55211926 -100418194 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1006 804 171 21 0 chr4 55212833 55212973 -100417147 + B1_Mur1 SINE Alu 1 143 -6 3 1006 400 77 31 0 chr4 55212980 55213045 -100417075 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 3 1006 1656 47 0 0 chr4 55213468 55213661 -100416459 + B2_Mm1t SINE B2 1 193 0 3 1006 215 208 0 117 chr4 55213716 55213751 -100416369 + PB1D10 SINE Alu 65 94 -23 3 1006 1267 169 76 157 chr4 55213751 55214158 -100415962 + ORR1D1 LTR MaLR 1 374 0 3 1006 215 208 0 117 chr4 55214158 55214182 -100415938 + PB1D10 SINE Alu 95 117 0 3 1006 320 366 0 24 chr4 55214331 55214499 -100415621 + MLT1A0 LTR MaLR 202 365 0 3 1006 714 160 131 40 chr4 55214508 55214684 -100415436 + B2_Mm2 SINE B2 1 192 -3 3 1006 315 315 11 0 chr4 55214869 55214958 -100415162 + MLT1J2 LTR MaLR 74 163 -285 3 1006 449 180 11 63 chr4 55215562 55215657 -100414463 + B3 SINE B2 2 91 -125 3 1006 260 27 27 0 chr4 55216411 55216448 -100413672 + (TGG)n Simple_repeat Simple_repeat 2 39 0 3 1006 194 180 0 39 chr4 55216573 55216625 -100413495 + GA-rich Low_complexity Low_complexity 5 54 0 3 1006 225 306 1 21 chr4 55217001 55217107 -100413013 + MIR SINE MIR 55 162 -106 3 1006 407 153 47 0 chr4 55217442 55217527 -100412593 + B3 SINE B2 128 216 0 3 1006 238 257 64 24 chr4 55218363 55218457 -100411663 + L2a LINE L2 3275 3425 -1 3 1006 426 243 84 0 chr4 55218723 55218830 -100411290 + PB1D7 SINE Alu 5 120 0 3 1006 961 187 4 127 chr4 55218849 55219094 -100411026 + B3 SINE B2 1 215 -1 3 1006 530 184 124 133 chr4 55219094 55219320 -100410800 + RLTR23 LTR ERV1 1 224 -206 3 1006 1768 137 47 0 chr4 55219320 55219620 -100410500 + RLTR23 LTR ERV1 117 430 0 3 1006 675 0 0 0 chr4 55219775 55219850 -100410270 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 3 1006 1171 43 0 7 chr4 55219851 55219992 -100410128 - B1_Mus1 SINE Alu -4 144 5 3 1006 407 347 8 0 chr4 55220343 55220464 -100409656 + ID_B1 SINE B4 83 204 -20 3 1006 668 277 42 9 chr4 55221197 55221412 -100408708 + ID_B1 SINE B4 2 223 -1 3 1006 191 32 0 61 chr4 55222312 55222345 -100407775 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 3 1006 211 352 36 27 chr4 55222403 55222514 -100407606 - MIRc SINE MIR -141 127 16 3 1006 352 205 176 30 chr4 55222564 55222695 -100407425 + RSINE1 SINE B4 2 151 -14 3 1006 444 232 10 39 chr4 55223105 55223208 -100406912 + B1F2 SINE Alu 1 100 -49 3 1006 191 218 0 18 chr4 55223219 55223275 -100406845 + G-rich Low_complexity Low_complexity 3 57 0 3 1006 303 287 69 10 chr4 55223804 55223906 -100406214 - MLT1J LTR MaLR -380 132 25 3 1006 314 213 129 16 chr4 55223976 55224100 -100406020 + L1MA6 LINE L1 6114 6251 -49 3 1006 505 272 0 19 chr4 55224123 55224228 -100405892 - PB1D10 SINE Alu -8 109 7 3 1006 295 281 36 24 chr4 55224154 55224238 -100405882 - B4A SINE B4 -126 166 82 3 1006 257 238 47 16 chr4 55224246 55224310 -100405810 - L1MC3 LINE L1 -299 7486 7421 3 1006 287 215 15 15 chr4 55224358 55224424 -100405696 + L1MC3 LINE L1 7499 7564 -221 3 1006 2503 236 79 54 chr4 55224528 55225253 -100404867 + Lx8 LINE L1 6368 7110 -363 3 1006 1469 330 125 40 chr4 55225409 55226274 -100403846 + MTE-int LTR MaLR 629 1566 -14 4 1006 807 40 0 0 chr4 55226489 55226588 -100403532 + (TC)n Simple_repeat Simple_repeat 1 99 0 4 1006 411 225 0 22 chr4 55226738 55226829 -100403291 - MTEb LTR MaLR -1 378 290 4 1006 371 186 0 10 chr4 55226942 55227040 -100403080 + GA-rich Low_complexity Low_complexity 1 97 0 4 1006 606 244 11 87 chr4 55227053 55227237 -100402883 - MTEb LTR MaLR -159 220 51 4 1006 231 291 0 0 chr4 55227188 55227243 -100402877 - MLT2B2 LTR ERVL -405 110 56 4 1006 182 37 37 0 chr4 55227265 55227292 -100402828 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1006 237 304 108 68 chr4 55227568 55227716 -100402404 + MER63A DNA AcHobo 31 184 -26 4 1006 189 94 0 0 chr4 55228507 55228539 -100401581 + (CAG)n Simple_repeat Simple_repeat 2 33 0 4 1006 1311 157 18 5 chr4 55229789 55230007 -100400113 + URR1B DNA MER1_type 4 224 -1 4 1006 504 239 17 17 chr4 55230035 55230150 -100399970 + PB1D10 SINE Alu 3 117 0 4 1006 396 160 292 0 chr4 55230162 55230268 -100399852 + B1_Mur2 SINE Alu 5 141 -8 4 1006 180 0 0 0 chr4 55230269 55230289 -100399831 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 4 1006 266 259 52 0 chr4 55231219 55231277 -100398843 - L3 LINE CR1 -445 4044 3984 4 1006 190 303 135 0 chr4 55231690 55231779 -100398341 + MIRc SINE MIR 108 208 -60 4 1006 351 276 0 0 chr4 55231801 55231876 -100398244 + B4A SINE B4 6 80 -212 4 1006 1077 271 28 62 chr4 55231876 55232379 -100397741 + MT2B LTR ERVL 1 553 -48 4 1006 861 157 0 0 chr4 55232380 55232533 -100397587 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 1006 500 68 14 0 chr4 55232538 55232611 -100397509 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 4 1006 853 287 35 5 chr4 55232663 55232866 -100397254 + B4A SINE B4 84 292 0 4 1006 204 40 0 0 chr4 55233146 55233171 -100396949 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1006 239 236 36 0 chr4 55233180 55233235 -100396885 - ID4 SINE ID -14 69 13 4 1006 225 0 0 0 chr4 55234293 55234318 -100395802 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 4 1006 823 270 76 30 chr4 55234362 55234599 -100395521 - B4 SINE B4 -5 287 40 4 1006 701 185 169 0 chr4 55234629 55234807 -100395313 - Lx3C LINE L1 -11 6965 6758 4 1006 685 304 9 27 chr4 55235242 55235465 -100394655 - L3 LINE CR1 -2161 2328 2110 4 1006 1169 264 71 30 chr4 55236125 55236489 -100393631 + MTE2a LTR MaLR 1 379 0 4 1006 265 313 81 0 chr4 55236901 55237000 -100393120 + MER20B DNA MER1_type 69 175 -608 4 1006 723 107 0 10 chr4 55237056 55237160 -100392960 + B2_Mm2 SINE B2 2 104 -91 4 1006 266 224 11 34 chr4 55237992 55238021 -100392099 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 4 1006 366 74 0 0 chr4 55238021 55238075 -100392045 + (TATG)n Simple_repeat Simple_repeat 2 55 0 4 1006 266 224 11 34 chr4 55238075 55238133 -100391987 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 4 1006 328 361 71 38 chr4 55238160 55238370 -100391750 - MIRb SINE MIR -7 261 45 4 1006 273 328 142 28 chr4 55238386 55238527 -100391593 + MLT1F1 LTR MaLR 4 160 -388 4 1006 669 281 31 36 chr4 55238526 55238718 -100391402 + MLT1F1 LTR MaLR 366 556 -13 4 1006 207 100 0 0 chr4 55239067 55239097 -100391023 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 4 1006 288 231 83 37 chr4 55239193 55239294 -100390826 - Lx4B LINE L1 0 7058 6953 4 1006 1204 36 0 0 chr4 55239294 55239431 -100390689 - B1_Mus1 SINE Alu -10 138 2 4 1006 1042 68 14 0 chr4 55239659 55239807 -100390313 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 4 1006 474 271 85 0 chr4 55240053 55240182 -100389938 + B1F SINE Alu 1 140 -9 4 1006 387 247 25 0 chr4 55240380 55240485 -100389635 + MIR SINE MIR 22 129 -139 4 1006 1309 226 93 33 chr4 55240971 55241305 -100388815 + ORR1E LTR MaLR 1 354 -5 4 1006 191 314 20 0 chr4 55241677 55241728 -100388392 + L2 LINE L2 1645 1696 -1723 4 1006 357 117 0 0 chr4 55241764 55241824 -100388296 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1006 469 288 122 47 chr4 55241854 55242109 -100388011 - B4 SINE B4 -18 274 1 4 1006 325 313 221 31 chr4 55242162 55242488 -100387632 + L2 LINE L2 1920 2307 -1112 4 1006 911 246 152 22 chr4 55242816 55243132 -100386988 - ORR1D2 LTR MaLR -8 362 6 4 1006 770 222 80 108 chr4 55243652 55243690 -100386430 + ID SINE ID 5 41 -183 4 1006 3241 34 37 5 chr4 55243690 55244073 -100386047 - MTA_Mm LTR MaLR -1 395 1 4 1006 770 222 80 108 chr4 55244073 55244246 -100385874 + ID_B1 SINE B4 42 210 -14 4 1006 828 293 61 42 chr4 55245256 55245665 -100384455 - L1MB5 LINE L1 -127 6047 5631 4 1006 1398 265 19 53 chr4 55245859 55246159 -100383961 - MTEa LTR MaLR 0 379 85 4 1006 1342 172 0 0 chr4 55246159 55246380 -100383740 + URR1B DNA MER1_type 5 225 0 4 1006 1398 265 19 53 chr4 55246380 55246454 -100383666 - MTEa LTR MaLR -295 84 18 4 1006 334 353 51 57 chr4 55246529 55246706 -100383414 - L2b LINE L2 -192 3183 3008 4 1006 26 0 0 0 chr4 55247167 55247193 -100382927 + AT_rich Low_complexity Low_complexity 1 26 0 4 1006 339 155 70 0 chr4 55247198 55247269 -100382851 - Lx7 LINE L1 -6 7690 7615 4 1006 608 306 50 0 chr4 55247483 55247643 -100382477 - MER82 DNA MER2_type -39 614 447 4 1006 990 258 62 34 chr4 55247790 55248111 -100382009 - MER82 DNA MER2_type -322 331 2 4 1006 1422 281 68 13 chr4 55248196 55248593 -100381527 + MTD LTR MaLR 1 419 0 4 1006 183 252 154 48 chr4 55248595 55248699 -100381421 + L2 LINE L2 2397 2511 -908 4 1006 296 140 40 0 chr4 55249510 55249560 -100380560 - BGLII_Mus LTR ERVK 0 422 371 4 1006 1184 68 0 0 chr4 55249560 55249707 -100380413 + B1_Mus2 SINE Alu 1 147 0 4 1006 318 50 0 0 chr4 55249707 55249747 -100380373 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1006 2613 70 38 0 chr4 55249747 55250116 -100380004 - BGLII_Mus LTR ERVK -36 386 4 4 1006 228 67 0 0 chr4 55251260 55251290 -100378830 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1006 1641 36 5 0 chr4 55251744 55251936 -100378184 + B2_Mm1t SINE B2 1 193 0 4 1006 574 260 19 39 chr4 55253102 55253258 -100376862 + MER3 DNA MER1_type 39 191 -18 4 1006 187 338 0 27 chr4 55254063 55254136 -100375984 - L2a LINE L2 -4 3422 3352 4 1006 1358 108 113 0 chr4 55254764 55254967 -100375153 - URR1A DNA MER1_type 0 226 1 4 1006 239 244 0 0 chr4 55257486 55257531 -100372589 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1006 579 270 24 150 chr4 55257573 55257826 -100372294 + B4 SINE B4 1 221 -71 4 1006 1096 58 0 0 chr4 55257694 55257831 -100372289 + B1_Mus1 SINE Alu 12 148 0 4 1006 399 261 117 0 chr4 55257835 55257946 -100372174 + B3A SINE B2 28 151 -47 4 1006 219 88 0 0 chr4 55257951 55257985 -100372135 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1006 264 59 0 0 chr4 55257998 55258032 -100372088 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1006 270 211 75 19 chr4 55258120 55258173 -100371947 + B4 SINE B4 214 269 -23 4 1006 423 0 0 0 chr4 55258174 55258221 -100371899 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1006 195 315 31 73 chr4 55258227 55258323 -100371797 + MIRc SINE MIR 114 205 -63 4 1006 185 227 0 0 chr4 55258540 55258584 -100371536 + MIRc SINE MIR 175 218 -50 4 1006 216 349 0 0 chr4 55258846 55258909 -100371211 - MIRb SINE MIR -170 98 36 4 1006 3538 36 0 0 chr4 55259046 55259459 -100370661 + L1Md_T LINE L1 6170 6582 0 4 1006 198 0 0 0 chr4 55259489 55259511 -100370609 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1006 2890 82 0 0 chr4 55259511 55259888 -100370232 + Lx3_Mus LINE L1 6242 6618 -391 4 1006 231 36 0 0 chr4 55260262 55260290 -100369830 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1006 348 351 20 115 chr4 55260290 55260586 -100369534 - LTR82B Low_complexity ERVL -164 666 399 4 1006 514 302 116 83 chr4 55260719 55260939 -100369181 - MLT1C LTR MaLR -27 440 207 4 1006 260 27 27 0 chr4 55260939 55260976 -100369144 + (TATG)n Simple_repeat Simple_repeat 4 41 0 4 1006 514 302 116 83 chr4 55260976 55261091 -100369029 - MLT1C LTR MaLR -261 206 95 4 1006 445 299 47 16 chr4 55261459 55261588 -100368532 + B1_Mur1 SINE Alu 17 149 0 4 1006 230 0 33 0 chr4 55261591 55261621 -100368499 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1006 1307 118 10 5 chr4 55261800 55262005 -100368115 - Lx2 LINE L1 0 6997 6792 4 1006 3432 88 22 22 chr4 55262005 55262493 -100367627 - Lx2 LINE L1 -387 6610 6123 4 1006 300 341 11 0 chr4 55263562 55263650 -100366470 + BC1_Mm scRNA scRNA 1 89 -63 4 1006 522 0 0 0 chr4 55263826 55263884 -100366236 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1006 259 303 3 11 chr4 55264103 55264195 -100365925 - MLT1D LTR MaLR -20 485 356 4 1006 403 289 0 88 chr4 55264391 55264516 -100365604 + PB1D10 SINE Alu 3 116 -1 4 1006 563 210 77 26 chr4 55264513 55264675 -100365445 - MLT1D LTR MaLR -328 177 8 4 1006 2882 107 24 5 chr4 55264892 55265305 -100364815 - MTC LTR MaLR 0 421 1 4 1006 560 244 42 47 chr4 55265624 55265799 -100364321 - ID_B1 SINE B4 -33 259 69 4 1006 400 197 22 152 chr4 55266174 55266312 -100363808 + MT2B LTR ERVL 145 264 -337 4 1006 1120 30 0 0 chr4 55266213 55266347 -100363773 + B1_Mus2 SINE Alu 14 147 0 4 1006 565 246 191 60 chr4 55267140 55267195 -100362925 + B4 SINE B4 2 56 -236 4 1006 216 0 0 0 chr4 55267195 55267219 -100362901 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 4 1006 565 246 191 60 chr4 55267219 55267414 -100362706 + B4 SINE B4 57 284 -8 4 1006 312 91 0 0 chr4 55268208 55268252 -100361868 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1006 3001 85 8 0 chr4 55269063 55269465 -100360655 - MTB_Mm LTR MaLR -2 405 1 4 1006 276 30 0 0 chr4 55269718 55269751 -100360369 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1006 204 67 0 0 chr4 55269751 55269780 -100360340 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1006 233 236 36 0 chr4 55269786 55269841 -100360279 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 4 1006 508 145 22 34 chr4 55269842 55270020 -100360100 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 4 1006 205 355 131 8 chr4 55270277 55270399 -100359721 - MIR SINE MIR -59 209 66 4 1006 448 295 33 33 chr4 55270610 55270792 -100359328 - MER53 DNA hAT -11 182 1 4 1006 258 32 0 0 chr4 55270866 55270897 -100359223 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1006 689 192 90 37 chr4 55270998 55271187 -100358933 + Lx3C LINE L1 6776 6974 -2 4 1006 493 311 73 0 chr4 55271215 55271366 -100358754 + MLT1B LTR MaLR 219 380 -10 5 1006 345 248 26 52 chr4 55271546 55271661 -100358459 + MER81 DNA AcHobo 3 114 0 5 1006 1151 301 82 67 chr4 55271748 55272197 -100357923 + LTR82B Low_complexity ERVL 4 459 -371 5 1006 2302 116 3 9 chr4 55272535 55272866 -100357254 + ORR1A4 LTR MaLR 1 329 0 5 1006 1134 301 7 10 chr4 55272871 55273173 -100356947 - MLT2B2 LTR ERVL -213 302 2 5 1006 311 167 55 96 chr4 55273611 55273625 -100356495 - PB1D9 SINE Alu -1 119 108 5 1006 199 0 0 61 chr4 55273625 55273658 -100356462 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1006 257 0 0 29 chr4 55273661 55273695 -100356425 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 1006 311 167 55 96 chr4 55273695 55273749 -100356371 - PB1D9 SINE Alu -13 107 50 5 1006 189 0 0 0 chr4 55273757 55273778 -100356342 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1006 1216 238 29 98 chr4 55273933 55274310 -100355810 + ORR1E LTR MaLR 3 353 -6 5 1006 444 320 0 16 chr4 55274318 55274445 -100355675 - MER5B DNA MER1_type -39 139 15 5 1006 617 271 0 0 chr4 55274536 55274669 -100355451 + B1_Mur3 SINE Alu 1 133 -16 5 1006 711 279 11 6 chr4 55274816 55274996 -100355124 + B3A SINE B2 2 182 -16 5 1006 521 340 117 12 chr4 55275090 55275337 -100354783 + LTR82A LTR ERVL 462 734 -138 5 1006 560 318 159 19 chr4 55275406 55275765 -100354355 + MER90a LTR ERV1 69 477 -137 5 1006 447 194 0 0 chr4 55275815 55275908 -100354212 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1006 437 266 9 0 chr4 55275967 55276080 -100354040 + PB1D10 SINE Alu 4 117 0 5 1006 330 325 99 66 chr4 55276083 55276294 -100353826 - MLT1E1A LTR MaLR -51 629 412 5 1006 789 265 101 10 chr4 55276318 55276516 -100353604 - ID_B1 SINE B4 0 224 9 5 1006 465 295 70 111 chr4 55276525 55276769 -100353351 - MLT1E1A LTR MaLR -258 422 189 5 1006 728 232 12 43 chr4 55277300 55277462 -100352658 + RSINE1 SINE B4 3 159 -6 5 1006 211 143 0 23 chr4 55278014 55278057 -100352063 + A-rich Low_complexity Low_complexity 3 44 0 5 1006 495 0 0 0 chr4 55278276 55278331 -100351789 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1006 2140 40 0 0 chr4 55279087 55279340 -100350780 + L1Md_T LINE L1 6330 6582 0 5 1006 346 341 23 8 chr4 55279407 55279537 -100350583 - L2 LINE L2 -589 2830 2699 5 1006 3009 74 25 5 chr4 55279997 55280389 -100349731 - MTB LTR MaLR 0 400 1 5 1006 441 302 8 8 chr4 55280531 55280648 -100349472 - RSINE1 SINE B4 -15 150 34 5 1006 515 202 138 0 chr4 55280695 55280804 -100349316 + B1_Mur4 SINE Alu 2 125 -25 5 1006 744 94 0 0 chr4 55280808 55280914 -100349206 + (GGGA)n Simple_repeat Simple_repeat 4 109 0 5 1006 205 175 50 0 chr4 55280921 55280961 -100349159 + GA-rich Low_complexity Low_complexity 1 42 0 5 1006 884 168 7 0 chr4 55280965 55281108 -100349012 + B1_Mur4 SINE Alu 1 144 -6 5 1006 1065 58 0 0 chr4 55281112 55281249 -100348871 + (GGGAGA)n Simple_repeat Simple_repeat 6 142 0 5 1006 831 182 14 0 chr4 55281259 55281407 -100348713 + B1_Mur4 SINE Alu 1 150 0 5 1006 241 115 51 13 chr4 55281514 55281593 -100348527 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1006 644 208 169 32 chr4 55281730 55281919 -100348201 - B3A SINE B2 0 216 2 5 1006 351 320 72 13 chr4 55282030 55282182 -100347938 + MER31B LTR ERV1 14 174 -292 5 1006 194 33 67 0 chr4 55282266 55282296 -100347824 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 1006 231 268 49 0 chr4 55282297 55282461 -100347659 + (TA)n Simple_repeat Simple_repeat 2 173 0 5 1006 1802 313 130 13 chr4 55282462 55283210 -100346910 + MER21B LTR ERV1 6 840 -23 5 1006 2515 89 3 0 chr4 55283267 55283593 -100346527 + ORR1A2 LTR MaLR 1 327 0 5 1006 252 315 122 8 chr4 55283863 55283994 -100346126 + L1MC1 LINE L1 6099 6244 -89 5 1006 675 286 12 6 chr4 55284057 55284219 -100345901 + RSINE1 SINE B4 3 165 0 5 1006 213 159 0 0 chr4 55284276 55284320 -100345800 + GA-rich Low_complexity Low_complexity 2 45 0 5 1006 431 291 87 22 chr4 55284497 55284680 -100345440 - L1MB1 LINE L1 -7 6161 5967 5 1006 419 223 43 0 chr4 55285834 55285928 -100344192 + PB1D10 SINE Alu 9 106 -11 5 1006 576 0 0 0 chr4 55285928 55285992 -100344128 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 5 1006 1070 109 0 39 chr4 55286371 55286387 -100343733 - B2_Mm2 SINE B2 -19 176 162 5 1006 937 128 0 7 chr4 55286387 55286537 -100343583 + Lx LINE L1 6499 6647 -7 5 1006 198 0 0 0 chr4 55286538 55286560 -100343560 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 5 1006 1070 109 0 39 chr4 55286560 55286723 -100343397 - B2_Mm2 SINE B2 -34 161 2 5 1006 414 302 48 148 chr4 55287769 55287979 -100342141 - RMER30 DNA MER1_type -9 193 5 5 1006 398 156 65 32 chr4 55289079 55289172 -100340948 + PB1D10 SINE Alu 22 117 0 5 1006 360 0 0 0 chr4 55290188 55290228 -100339892 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1006 360 319 0 26 chr4 55290249 55290365 -100339755 - RSINE1 SINE B4 -51 114 2 5 1006 423 251 239 5 chr4 55290365 55290547 -100339573 - B4 SINE B4 -66 226 2 5 1006 339 327 24 30 chr4 55290637 55290801 -100339319 - MIR SINE MIR -23 239 77 5 1006 382 318 53 0 chr4 55290917 55291049 -100339071 - MIR SINE MIR -115 147 9 5 1006 646 233 137 17 chr4 55292325 55292488 -100337632 + B3A SINE B2 3 187 -11 5 1006 1198 75 0 0 chr4 55292488 55292635 -100337485 + B1_Mus1 SINE Alu 2 148 0 5 1006 646 233 137 17 chr4 55292635 55292646 -100337474 + B3A SINE B2 188 198 0 5 1006 344 184 10 0 chr4 55292722 55292820 -100337300 + (TGG)n Simple_repeat Simple_repeat 3 101 0 5 1006 846 150 0 7 chr4 55292821 55292951 -100337169 + B1_Mur2 SINE Alu 10 139 -10 5 1006 252 86 0 0 chr4 55292951 55292986 -100337134 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1006 270 152 57 0 chr4 55293536 55293600 -100336520 + L1M LINE L1 5324 5390 -901 5 1006 201 147 0 0 chr4 55293618 55293652 -100336468 + (TTA)n Simple_repeat Simple_repeat 2 35 0 5 1006 838 233 28 24 chr4 55293652 55293863 -100336257 + B3 SINE B2 1 212 -4 5 1006 596 202 254 0 chr4 55293950 55294123 -100335997 + B4A SINE B4 1 217 -75 5 1006 459 0 0 0 chr4 55294241 55294292 -100335828 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 1006 459 0 0 0 chr4 55294362 55294413 -100335707 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1006 1009 163 108 5 chr4 55295511 55295715 -100334405 + URR1B DNA MER1_type 1 225 0 5 1006 441 80 305 42 chr4 55295716 55295834 -100334286 - B2_Mm2 SINE B2 0 195 47 5 1006 1177 96 72 0 chr4 55295885 55296051 -100334069 - B2_Mm1t SINE B2 -14 179 2 5 1006 549 0 0 0 chr4 55296655 55296716 -100333404 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1006 594 0 0 0 chr4 55296791 55296857 -100333263 + (TTTTA)n Simple_repeat Simple_repeat 3 68 0 5 1006 448 231 43 130 chr4 55296868 55297052 -100333068 - B4 SINE B4 -124 168 1 5 1006 819 238 38 42 chr4 55297207 55297470 -100332650 + LTR82A LTR ERVL 499 760 -112 5 1006 617 118 26 19 chr4 55297508 55297663 -100332457 + (CAGAGA)n Simple_repeat Simple_repeat 2 157 0 5 1006 655 95 19 0 chr4 55298078 55298183 -100331937 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 1006 653 132 9 0 chr4 55298238 55298344 -100331776 - B1_Mur3 SINE Alu -1 148 42 5 1006 229 215 48 48 chr4 55298279 55298362 -100331758 - RLTR25B LTR ERVK -519 509 427 5 1006 423 242 0 0 chr4 55298362 55298461 -100331659 + (CCTG)n Simple_repeat Simple_repeat 2 100 0 5 1006 234 259 0 0 chr4 55298463 55298517 -100331603 + MurSatRep1 Unknown Unknown 230 283 -1854 5 1006 1577 211 53 14 chr4 55298646 55299001 -100331119 + ORR1D2 LTR MaLR 1 369 -1 5 1006 917 186 136 0 chr4 55299008 55299207 -100330913 + URR1A DNA MER1_type 1 226 0 5 1006 417 288 0 41 chr4 55299981 55300104 -100330016 + RSINE1 SINE B4 47 164 -1 5 1006 278 392 102 10 chr4 55300127 55300323 -100329797 - LTR16E2 LTR ERVL -262 306 93 5 1006 901 82 34 7 chr4 55300635 55300783 -100329337 - URR1A DNA MER1_type 0 226 75 5 1006 788 162 20 7 chr4 55300784 55300933 -100329187 - URR1A DNA MER1_type -75 151 1 5 1006 972 262 71 74 chr4 55301111 55301462 -100328658 + ORR1E LTR MaLR 1 350 -9 5 1006 1536 58 5 0 chr4 55302430 55302621 -100327499 + B2_Mm1a SINE B2 2 193 0 5 1006 324 312 162 26 chr4 55302681 55302939 -100327181 - ERVL-B4-int LTR ERVL -3104 2657 2256 5 1006 634 236 192 25 chr4 55303564 55303803 -100326317 - RMER15 LTR ERVL -22 553 275 5 1006 225 344 62 0 chr4 55304052 55304148 -100325972 - B4 SINE B4 -189 103 2 5 1006 252 268 46 11 chr4 55304535 55304622 -100325498 - MIRb SINE MIR -58 210 121 5 1006 522 248 103 0 chr4 55304978 55305123 -100324997 + B3A SINE B2 4 163 -35 5 1006 858 154 61 89 chr4 55305253 55305467 -100324653 - B3 SINE B2 0 216 9 5 1006 759 314 41 31 chr4 55305564 55305978 -100324142 - Lx8 LINE L1 -68 7405 6988 5 1006 196 337 0 12 chr4 55306394 55306478 -100323642 + MIRc SINE MIR 172 254 -14 5 1006 588 29 0 0 chr4 55306897 55306967 -100323153 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1006 213 39 0 0 chr4 55307967 55307993 -100322127 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1006 279 93 0 0 chr4 55308230 55308273 -100321847 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1006 325 179 30 0 chr4 55308292 55308359 -100321761 - L1MA4A LINE L1 -418 5885 5817 5 1006 722 234 30 111 chr4 55308432 55308641 -100321479 - B3A SINE B2 0 216 23 5 1006 2290 137 18 30 chr4 55308641 55309040 -100321080 - ORR1B1 LTR MaLR 0 394 1 5 1006 722 236 5 52 chr4 55309040 55309065 -100321055 - B3A SINE B2 -176 22 1 5 1006 769 272 137 43 chr4 55309187 55309569 -100320551 - L1MA8 LINE L1 -379 5912 5533 6 1006 417 39 0 0 chr4 55309581 55309632 -100320488 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1006 517 299 16 28 chr4 55309704 55309886 -100320234 - B3A SINE B2 -15 183 4 6 1006 639 0 0 0 chr4 55309961 55310032 -100320088 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 6 1006 207 0 0 0 chr4 55310036 55310059 -100320061 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 6 1006 525 252 0 0 chr4 55310092 55310207 -100319913 - B3A SINE B2 -83 115 1 6 1006 530 219 75 84 chr4 55310236 55310276 -100319844 - L1MA4A LINE L1 -837 5466 5437 5 1006 795 251 14 14 chr4 55310276 55310486 -100319634 - B3 SINE B2 -6 210 1 6 1006 534 223 76 79 chr4 55310486 55310675 -100319445 - L1MA4A LINE L1 -867 5436 5239 5 1006 1046 234 109 53 chr4 55310676 55311014 -100319106 - ORR1D2 LTR MaLR -2 368 12 6 1006 401 345 89 0 chr4 55311022 55311257 -100318863 + HAL1 LINE L1 269 524 -1983 6 1006 1205 264 32 29 chr4 55311324 55311640 -100318480 - MTE2b LTR MaLR 0 379 63 6 1007 33 0 0 0 chr4 55312494 55312527 -100317593 + AT_rich Low_complexity Low_complexity 1 33 0 6 1007 1038 135 145 5 chr4 55312527 55312713 -100317407 - U3 snRNA snRNA -1 216 5 6 1007 1263 66 0 0 chr4 55312713 55312879 -100317241 + (TC)n Simple_repeat Simple_repeat 1 166 0 6 1007 354 229 177 48 chr4 55313002 55313126 -100316994 + B1_Mur2 SINE Alu 1 140 -9 6 1007 225 0 0 0 chr4 55313863 55313888 -100316232 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1007 615 221 16 0 chr4 55314073 55314200 -100315920 + B3A SINE B2 36 164 -34 6 1007 297 0 0 0 chr4 55314217 55314250 -100315870 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1007 420 240 130 0 chr4 55314607 55314707 -100315413 - PB1D10 SINE Alu -4 113 1 6 1007 225 233 27 0 chr4 55314775 55314848 -100315272 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 6 1007 248 266 32 11 chr4 55315012 55315107 -100315013 + L1ME4a LINE L1 6018 6114 -10 6 1007 970 211 49 5 chr4 55315655 55315860 -100314260 - B3 SINE B2 0 216 3 6 1007 778 230 47 42 chr4 55315869 55316082 -100314038 - B3 SINE B2 -2 214 1 6 1007 246 219 25 69 chr4 55316466 55316572 -100313548 - ID4_ SINE ID -41 111 13 6 1007 1516 28 51 0 chr4 55316711 55316889 -100313231 + B2_Mm1a SINE B2 2 188 -5 6 1007 2122 138 0 12 chr4 55318197 55318528 -100311592 - ORR1A2 LTR MaLR 0 327 1 6 1007 258 170 19 0 chr4 55318619 55318672 -100311448 + B1_Mur3 SINE Alu 90 143 -6 6 1007 267 31 0 0 chr4 55318678 55318710 -100311410 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1007 334 246 0 0 chr4 55318988 55319057 -100311063 - Lx8 LINE L1 -365 7108 7040 6 1007 1487 59 16 0 chr4 55319128 55319315 -100310805 + B2_Mm1a SINE B2 1 190 -3 6 1007 235 312 0 0 chr4 55319585 55319649 -100310471 + G-rich Low_complexity Low_complexity 2 65 0 6 1007 194 295 0 0 chr4 55319651 55319712 -100310408 + MIR SINE MIR 132 192 -70 6 1007 1130 249 141 27 chr4 55319781 55320157 -100309963 - MTD LTR MaLR 0 419 1 6 1007 338 206 0 0 chr4 55320467 55320530 -100309590 - MLT1E3 LTR MaLR 0 624 562 6 1007 1165 48 7 0 chr4 55320533 55320678 -100309442 + B1_Mm SINE Alu 2 147 0 6 1007 616 325 59 20 chr4 55320697 55320951 -100309169 - MLT1E3 LTR MaLR -51 573 310 6 1007 460 329 53 138 chr4 55321125 55321407 -100308713 + B4 SINE B4 35 292 0 6 1007 3404 70 19 82 chr4 55321576 55322090 -100308030 + RLTR45 LTR ERVK 1 482 0 6 1007 4410 70 107 22 chr4 55322090 55322728 -100307392 + RLTR45-int LTR ERVK 1 692 -6552 6 1007 1160 51 0 0 chr4 55323029 55323167 -100306953 + RLTR45-int LTR ERVK 681 818 -6426 6 1007 291 244 22 22 chr4 55323565 55323657 -100306463 + MMTV-int LTR ERVK 2413 2504 -4749 6 1007 11721 46 16 9 chr4 55323950 55325765 -100304355 + RLTR45-int LTR ERVK 1322 3212 -4032 6 1007 4059 80 30 31 chr4 55325735 55326343 -100303777 + RLTR45-int LTR ERVK 3380 3986 -3258 6 1007 17485 54 9 17 chr4 55326336 55328533 -100301587 + RLTR45-int LTR ERVK 5065 7244 0 6 1007 3402 70 19 82 chr4 55328533 55329047 -100301073 + RLTR45 LTR ERVK 1 482 0 6 1007 900 250 16 49 chr4 55329048 55329355 -100300765 + MER33 DNA MER1_type 22 318 -6 6 1007 250 265 24 0 chr4 55330293 55330376 -100299744 + MIR SINE MIR 178 262 0 6 1007 180 305 35 47 chr4 55330373 55330459 -100299661 - MIRb SINE MIR -75 193 109 6 1007 644 207 131 52 chr4 55330515 55330581 -100299539 + B3 SINE B2 2 84 -132 6 1007 6502 45 29 0 chr4 55330581 55331366 -100298754 - RLTR13C2 LTR ERVK 0 808 1 6 1007 644 207 131 52 chr4 55331366 55331452 -100298668 + B3 SINE B2 85 166 -50 6 1007 256 146 0 20 chr4 55331451 55331500 -100298620 - MTD LTR MaLR -90 329 282 6 1007 498 210 78 28 chr4 55331560 55331702 -100298418 - MTD LTR MaLR -158 261 113 6 1007 247 295 130 8 chr4 55332027 55332150 -100297970 + MER5A DNA MER1_type 45 182 -7 6 1007 466 283 107 61 chr4 55332164 55332359 -100297761 + MTD LTR MaLR 7 210 -209 6 1007 560 168 28 0 chr4 55332359 55332466 -100297654 + B3 SINE B2 1 110 -106 6 1007 207 0 0 0 chr4 55332466 55332489 -100297631 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1007 830 119 8 0 chr4 55332513 55332647 -100297473 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 6 1007 1697 130 65 47 chr4 55332701 55333023 -100297097 + ORR1A4 LTR MaLR 2 329 0 6 1007 277 148 328 27 chr4 55333215 55333328 -100296792 - B2_Mm2 SINE B2 -2 193 47 6 1007 1278 97 17 0 chr4 55333394 55333569 -100296551 - B2_Mm1t SINE B2 -14 179 2 6 1007 362 355 24 0 chr4 55333599 55333723 -100296397 + RSINE1 SINE B4 3 129 -36 6 1007 778 290 75 55 chr4 55333841 55334202 -100295918 - MTEa LTR MaLR -9 370 3 6 1007 251 136 0 48 chr4 55334450 55334461 -100295659 + T-rich Low_complexity Low_complexity 49 59 0 6 1007 695 93 112 0 chr4 55334461 55334568 -100295552 - PB1D9 SINE Alu 0 120 2 6 1007 251 136 0 48 chr4 55334568 55334618 -100295502 + T-rich Low_complexity Low_complexity 2 48 0 6 1007 1200 54 0 0 chr4 55334618 55334765 -100295355 - B1_Mus2 SINE Alu 0 147 1 6 1007 221 318 0 68 chr4 55335000 55335118 -100295002 + B3A SINE B2 5 114 -84 6 1007 695 300 62 23 chr4 55335023 55335279 -100294841 + B4A SINE B4 27 292 0 6 1007 387 183 0 0 chr4 55335281 55335363 -100294757 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1007 804 57 0 0 chr4 55335388 55335494 -100294626 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1007 276 364 27 0 chr4 55335718 55335828 -100294292 - MER63A DNA AcHobo -51 159 47 6 1007 467 294 73 78 chr4 55336243 55336435 -100293685 + B3A SINE B2 2 192 -6 6 1007 626 10 68 0 chr4 55336439 55336542 -100293578 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1007 718 44 0 89 chr4 55336942 55336964 -100293156 - BC1_Mm scRNA scRNA -39 113 100 6 1007 1458 84 0 0 chr4 55336964 55337155 -100292965 - B2_Mm1t SINE B2 -1 192 2 6 1007 1364 110 11 0 chr4 55337155 55337346 -100292774 - B2_Mm2 SINE B2 -1 194 2 6 1007 718 44 0 89 chr4 55337346 55337446 -100292674 - BC1_Mm scRNA scRNA -53 99 2 6 1007 268 40 0 107 chr4 55337451 55337507 -100292613 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1007 1695 21 0 15 chr4 55337527 55337723 -100292397 - B2_Mm1a SINE B2 0 193 1 6 1007 670 246 7 34 chr4 55337815 55337962 -100292158 - RSINE1 SINE B4 -19 146 4 6 1007 1198 103 86 0 chr4 55338856 55339031 -100291089 + B2_Mm2 SINE B2 1 190 -5 6 1007 216 184 0 0 chr4 55339078 55339116 -100291004 - B2_Mm2 SINE B2 -157 38 1 6 1007 289 283 121 21 chr4 55339168 55339309 -100290811 + RSINE1 SINE B4 11 165 0 6 1007 691 251 6 30 chr4 55339860 55340028 -100290092 + B3A SINE B2 1 164 -34 6 1007 1339 143 9 26 chr4 55340089 55340318 -100289802 - URR1B DNA MER1_type 0 225 1 6 1007 216 67 0 0 chr4 55340753 55340783 -100289337 + (GGATG)n Simple_repeat Simple_repeat 3 32 0 6 1007 733 174 28 0 chr4 55340972 55341116 -100289004 - B1_Mur3 SINE Alu 0 149 2 6 1007 233 330 22 11 chr4 55341841 55341933 -100288187 + LTR79 LTR ERVL 427 519 -8 6 1007 1636 27 21 0 chr4 55342026 55342214 -100287906 + B2_Mm1a SINE B2 2 193 0 6 1007 211 268 0 0 chr4 55342389 55342445 -100287675 - MIRm SINE MIR -130 146 91 6 1007 314 243 64 27 chr4 55342557 55342667 -100287453 - ORR1E LTR MaLR -220 139 26 6 1007 315 0 0 0 chr4 55343183 55343218 -100286902 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1007 1154 224 66 117 chr4 55343295 55343689 -100286431 - MTE2a LTR MaLR 0 379 6 6 1007 393 22 0 0 chr4 55343805 55343851 -100286269 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1007 1255 41 0 0 chr4 55343872 55344018 -100286102 - B1_Mm SINE Alu 0 147 2 6 1007 582 253 102 17 chr4 55344105 55344282 -100285838 - MTE-int LTR MaLR -36 1544 1353 6 1007 569 110 47 8 chr4 55344414 55344542 -100285578 + GA-rich Low_complexity Low_complexity 3 135 0 6 1007 730 71 36 0 chr4 55344540 55344652 -100285468 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 6 1007 1180 217 92 11 chr4 55344655 55344939 -100285181 + ORR1C2 LTR MaLR 12 318 -66 6 1007 2383 314 74 59 chr4 55344945 55346141 -100283979 - MTE-int LTR MaLR -306 1274 62 6 1007 450 340 18 93 chr4 55346165 55346499 -100283621 - ORR1E LTR MaLR -48 311 3 6 1007 1269 78 33 22 chr4 55346595 55346779 -100283341 - B2_Mm1t SINE B2 -6 187 2 6 1007 1229 273 58 22 chr4 55347162 55347522 -100282598 + ORR1D1 LTR MaLR 2 374 0 6 1007 385 311 7 20 chr4 55347920 55348071 -100282049 + B1F SINE Alu 1 149 0 6 1007 456 19 0 0 chr4 55348283 55348336 -100281784 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1007 558 0 0 0 chr4 55348588 55348650 -100281470 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1007 736 303 0 0 chr4 55348696 55348884 -100281236 - B4 SINE B4 -59 233 46 6 1007 207 262 0 0 chr4 55348938 55348980 -100281140 + polypyrimidine Low_complexity Low_complexity 3 44 0 6 1007 815 322 31 22 chr4 55349004 55349272 -100280848 - MER2 DNA MER2_type -2 343 77 6 1007 1043 187 91 0 chr4 55349272 55349470 -100280650 - B3 SINE B2 0 216 1 6 1007 815 322 31 22 chr4 55349470 55349519 -100280601 - MER2 DNA MER2_type -269 76 24 6 1007 183 42 0 0 chr4 55349782 55349806 -100280314 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1007 741 203 220 0 chr4 55349874 55350051 -100280069 + B3 SINE B2 1 216 0 7 1007 278 159 59 73 chr4 55350158 55350226 -100279894 - PB1D10 SINE Alu -68 81 15 7 1007 242 178 51 64 chr4 55350440 55350518 -100279602 + ORR1D1 LTR MaLR 6 82 -292 7 1007 858 58 0 0 chr4 55350575 55350696 -100279424 + (TG)n Simple_repeat Simple_repeat 1 121 0 7 1007 873 156 0 26 chr4 55350725 55350876 -100279244 + B1_Mur4 SINE Alu 3 149 -1 7 1007 330 78 0 38 chr4 55351105 55351158 -100278962 + B1_Mur4 SINE Alu 99 149 -1 7 1007 498 258 8 61 chr4 55351277 55351409 -100278711 - RSINE1 SINE B4 -39 126 2 7 1007 198 0 0 0 chr4 55351818 55351840 -100278280 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1007 1012 116 0 0 chr4 55352673 55352820 -100277300 - B1_Mus2 SINE Alu 0 147 1 7 1007 1684 126 86 3 chr4 55352820 55353114 -100277006 - IAPEY3_LTR LTR ERVK -13 319 1 7 1007 587 299 60 17 chr4 55353121 55353356 -100276764 - MER73 LTR ERVL -387 257 13 7 1007 373 343 58 19 chr4 55353622 55353830 -100276290 - ORR1E LTR MaLR -143 216 1 7 1007 276 294 46 64 chr4 55353830 55353915 -100276205 - ORR1E-int LTR MaLR -53 1527 1445 7 1007 771 182 35 0 chr4 55353934 55354077 -100276043 - B1_Mur4 SINE Alu -1 149 2 7 1007 587 253 224 0 chr4 55354182 55354356 -100275764 + ID_B1 SINE B4 2 214 -10 7 1007 564 373 21 4 chr4 55354367 55354600 -100275520 - ORR1E-int LTR MaLR -243 1337 1101 7 1007 2201 148 51 18 chr4 55354600 55355034 -100275086 + RMER6B LTR ERVK 1 448 -13 7 1007 702 323 31 31 chr4 55355099 55355390 -100274730 - ORR1E-int LTR MaLR -543 1037 747 7 1007 1888 153 24 59 chr4 55355415 55355756 -100274364 - ORR1A4 LTR MaLR 0 329 1 7 1007 1142 68 0 7 chr4 55355787 55355934 -100274186 + B1_Mus2 SINE Alu 2 147 0 7 1007 315 49 0 0 chr4 55355936 55355977 -100274143 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1007 437 184 30 30 chr4 55356033 55356134 -100273986 - ORR1E-int LTR MaLR -1122 458 358 7 1007 2635 146 52 56 chr4 55356194 55356695 -100273425 - RLTR19 LTR ERVK 0 499 1 7 1007 610 152 71 9 chr4 55357004 55357117 -100273003 + B1_Mur3 SINE Alu 1 120 -29 7 1007 234 147 0 0 chr4 55357119 55357153 -100272967 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 7 1007 500 81 14 0 chr4 55357153 55357227 -100272893 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1007 278 265 15 0 chr4 55357539 55357607 -100272513 + ID4_ SINE ID 11 79 -4 7 1007 1188 61 0 0 chr4 55357630 55357777 -100272343 + B1_Mm SINE Alu 1 147 0 7 1007 702 188 20 53 chr4 55357851 55358003 -100272117 - B1_Mur2 SINE Alu -2 147 1 7 1007 411 206 66 38 chr4 55358188 55358294 -100271826 - PB1D10 SINE Alu 0 117 9 7 1007 1787 228 22 2 chr4 55358855 55359259 -100270861 - RMER5 LTR ERV1 -104 430 19 7 1007 737 286 5 0 chr4 55359451 55359640 -100270480 + B3A SINE B2 1 190 -8 7 1007 913 110 0 33 chr4 55359651 55359802 -100270318 - B1_Mus1 SINE Alu -1 147 2 7 1007 881 43 0 0 chr4 55359819 55359935 -100270185 + B1_Mus2 SINE Alu 29 144 -3 7 1007 423 0 0 0 chr4 55359935 55359982 -100270138 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1007 937 59 7 7 chr4 55360634 55360770 -100269350 + B1_Mus1 SINE Alu 12 147 -1 7 1007 216 0 0 0 chr4 55360774 55360798 -100269322 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1007 497 254 9 17 chr4 55360846 55360962 -100269158 + PB1D10 SINE Alu 3 117 0 7 1007 393 314 112 36 chr4 55361952 55362230 -100267890 - L2a LINE L2 -16 3410 3112 7 1007 435 267 64 104 chr4 55364641 55364693 -100265427 - ID_B1 SINE B4 -19 273 163 7 1007 789 103 14 35 chr4 55364693 55364834 -100265286 - B1_Mus2 SINE Alu 0 147 10 7 1007 435 267 64 104 chr4 55364834 55364907 -100265213 - ID_B1 SINE B4 -19 162 1 7 1007 201 74 0 0 chr4 55365133 55365160 -100264960 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1007 309 217 28 0 chr4 55365526 55365605 -100264515 - B1_Mur4 SINE Alu -32 88 9 7 1007 369 306 31 0 chr4 55365753 55365851 -100264269 + RSINE1 SINE B4 15 115 -50 7 1007 183 80 0 0 chr4 55365856 55365881 -100264239 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 7 1007 1015 153 74 60 chr4 55366507 55366722 -100263398 + URR1A DNA MER1_type 9 226 0 7 1007 511 248 8 0 chr4 55366834 55366955 -100263165 + B3 SINE B2 9 130 -86 7 1007 301 310 87 0 chr4 55367382 55367489 -100262631 - B1F SINE Alu -5 115 1 7 1007 531 45 0 0 chr4 55367626 55367692 -100262428 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1007 427 84 141 0 chr4 55367698 55367769 -100262351 - L1Md_F2 LINE L1 -19 6563 6483 7 1007 499 260 123 19 chr4 55368751 55368963 -100261157 - ORR1E LTR MaLR 0 370 137 7 1007 678 134 28 56 chr4 55368984 55369126 -100260994 - B1_Mm SINE Alu 0 147 10 7 1007 1031 96 145 0 chr4 55369146 55369312 -100260808 - B2_Mm2 SINE B2 -4 191 2 7 1007 510 236 31 0 chr4 55369313 55369440 -100260680 - ORR1E LTR MaLR -199 160 30 7 1007 456 19 0 0 chr4 55369442 55369495 -100260625 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1007 1088 52 37 0 chr4 55369496 55369632 -100260488 - B1_Mus2 SINE Alu -6 141 1 7 1007 244 179 143 43 chr4 55369745 55369815 -100260305 + MIR SINE MIR 33 109 -153 7 1007 390 285 134 94 chr4 55370155 55370484 -100259636 - ORR1E LTR MaLR 0 359 18 7 1007 279 279 25 67 chr4 55371559 55371678 -100258442 - RSINE1 SINE B4 -35 130 17 7 1007 324 0 0 0 chr4 55371748 55371784 -100258336 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1007 568 136 218 0 chr4 55371784 55371894 -100258226 - B1_Mus1 SINE Alu -13 135 2 7 1007 1130 45 0 0 chr4 55372225 55372359 -100257761 - B1_Mm SINE Alu -13 134 1 7 1007 1362 65 43 5 chr4 55372359 55372543 -100257577 - B2_Mm2 SINE B2 -2 193 2 7 1007 285 250 24 0 chr4 55373595 55373679 -100256441 - MER2 DNA MER2_type -115 230 145 7 1007 1210 34 7 0 chr4 55373744 55373890 -100256230 - B1_Mus2 SINE Alu 0 147 1 7 1007 1121 68 7 7 chr4 55374238 55374386 -100255734 - B1_Mus1 SINE Alu 0 148 1 7 1007 1714 202 61 13 chr4 55374657 55374953 -100255167 - MTC LTR MaLR -6 415 108 7 1007 1279 90 45 0 chr4 55374953 55375131 -100254989 + B2_Mm2 SINE B2 3 188 -7 7 1007 1714 202 61 13 chr4 55375131 55375230 -100254890 - MTC LTR MaLR -314 107 2 7 1007 267 278 128 57 chr4 55375230 55375361 -100254759 + B4A SINE B4 30 170 -122 7 1007 864 250 78 55 chr4 55375675 55376022 -100254098 - ORR1E LTR MaLR 0 359 5 7 1007 443 314 44 29 chr4 55376115 55376430 -100253690 + L1MA4 LINE L1 5611 5930 -370 7 1007 196 289 27 94 chr4 55376927 55377076 -100253044 + MIRc SINE MIR 22 160 -108 7 1007 323 233 163 70 chr4 55377169 55377298 -100252822 - B1F SINE Alu -8 141 1 7 1007 1007 213 9 42 chr4 55377326 55377542 -100252578 + B3 SINE B2 2 210 -6 7 1007 246 309 74 9 chr4 55377836 55377944 -100252176 - MIR3 SINE MIR -24 184 70 7 1007 282 207 22 54 chr4 55378152 55378227 -100251893 - Lx9 LINE L1 -7 7637 7561 7 1007 320 80 0 0 chr4 55378227 55378277 -100251843 - L1_Mus1 LINE L1 0 6567 6518 7 1007 282 207 22 54 chr4 55378277 55378293 -100251827 - Lx9 LINE L1 -84 7560 7549 7 1007 213 304 25 12 chr4 55378373 55378453 -100251667 - B4A SINE B4 -211 81 1 7 1007 1298 169 35 28 chr4 55378579 55378834 -100251286 - MTC LTR MaLR -11 410 154 7 1007 714 182 109 0 chr4 55378922 55379059 -100251061 - Lx5 LINE L1 -131 6919 6768 7 1007 391 147 15 0 chr4 55379067 55379135 -100250985 - MTC LTR MaLR -352 69 1 7 1007 274 282 34 45 chr4 55379135 55379181 -100250939 - PB1D9 SINE Alu -74 46 2 7 1007 186 103 0 0 chr4 55379190 55379219 -100250901 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1007 23 97 0 0 chr4 55379301 55379373 -100250747 + AT_rich Low_complexity Low_complexity 1 72 0 7 1007 216 204 23 0 chr4 55379381 55379425 -100250695 - ID4_ SINE ID 0 83 39 7 1007 328 109 109 0 chr4 55380307 55380362 -100249758 + PB1D9 SINE Alu 2 62 -58 7 1007 21 0 0 0 chr4 55381446 55381467 -100248653 + AT_rich Low_complexity Low_complexity 1 21 0 7 1007 320 228 93 86 chr4 55381632 55381771 -100248349 + B4 SINE B4 2 141 -151 7 1007 267 204 0 0 chr4 55382203 55382252 -100247868 + PB1D9 SINE Alu 2 50 -70 7 1007 258 244 137 25 chr4 55382471 55382644 -100247476 + Lx8 LINE L1 5694 5918 -1555 7 1007 441 361 0 63 chr4 55383470 55383538 -100246582 - B4A SINE B4 0 292 225 7 1007 438 69 0 0 chr4 55383538 55383596 -100246524 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 7 1007 1027 86 0 54 chr4 55383598 55383746 -100246374 - B1_Mus1 SINE Alu -6 142 3 7 1007 441 361 0 63 chr4 55383746 55383881 -100246239 - B4A SINE B4 -68 224 99 7 1007 1149 68 0 0 chr4 55383917 55384063 -100246057 - B1_Mm SINE Alu 0 147 2 7 1007 267 184 171 26 chr4 55385094 55385211 -100244909 - Tigger7 DNA MER2_type -85 2406 2273 7 1007 646 177 9 9 chr4 55385324 55385438 -100244682 + PB1D9 SINE Alu 5 118 -2 7 1007 1265 110 66 0 chr4 55385457 55385639 -100244481 + B2_Mm2 SINE B2 1 194 -1 7 1007 630 251 191 51 chr4 55385720 55385883 -100244237 - Tigger7 DNA MER2_type -2074 417 220 7 1007 405 0 0 0 chr4 55385883 55385928 -100244192 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1007 630 256 178 53 chr4 55385928 55386079 -100244041 - Tigger7 DNA MER2_type -2272 219 57 7 1007 898 246 97 36 chr4 55386522 55386851 -100243269 + Lx8 LINE L1 7116 7464 -9 7 1007 648 191 7 47 chr4 55386975 55387123 -100242997 - B1_Mus2 SINE Alu 0 147 6 7 1007 1091 95 0 7 chr4 55387471 55387619 -100242501 + B1_Mus2 SINE Alu 1 147 0 7 1007 22 35 0 0 chr4 55387638 55387667 -100242453 + AT_rich Low_complexity Low_complexity 1 29 0 7 1007 380 276 167 24 chr4 55387704 55387830 -100242290 + B3 SINE B2 48 191 -25 7 1007 453 244 11 0 chr4 55388863 55388953 -100241167 + PB1D10 SINE Alu 7 97 -20 7 1007 1046 15 131 0 chr4 55389081 55389211 -100240909 - B1_Mus2 SINE Alu 0 147 1 7 1007 238 273 32 74 chr4 55389365 55389460 -100240660 + RSINE1 SINE B4 3 93 -72 7 1007 1375 157 16 12 chr4 55389487 55389745 -100240375 + L1_Mus2 LINE L1 6308 6566 0 7 1007 676 244 46 40 chr4 55390160 55390335 -100239785 + B3 SINE B2 3 178 -38 8 1007 626 295 148 37 chr4 55393330 55393654 -100236466 - MLT1D LTR MaLR -2 503 144 8 1007 1207 68 0 0 chr4 55394527 55394673 -100235447 - B1_Mus2 SINE Alu 0 147 2 8 1007 212 0 36 0 chr4 55395268 55395296 -100234824 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1007 485 211 35 63 chr4 55395763 55395905 -100234215 + B1_Mur2 SINE Alu 6 143 -6 8 1007 210 37 0 0 chr4 55395906 55395933 -100234187 + (TGG)n Simple_repeat Simple_repeat 2 28 0 8 1007 979 60 0 0 chr4 55397014 55397148 -100232972 - B2_Mm1t SINE B2 0 193 60 8 1007 1447 52 20 35 chr4 55397168 55397366 -100232754 - B2_Mm2 SINE B2 0 195 1 8 1007 195 129 0 0 chr4 55397394 55397425 -100232695 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 8 1007 22 0 0 0 chr4 55397428 55397450 -100232670 + AT_rich Low_complexity Low_complexity 1 22 0 8 1007 347 127 0 0 chr4 55397461 55397516 -100232604 - B2_Mm2 SINE B2 -94 101 47 8 1007 1219 97 17 6 chr4 55397577 55397754 -100232366 - B2_Mm1t SINE B2 -14 179 1 8 1007 888 47 1 66 chr4 55397774 55397935 -100232185 - B1_Mus2 SINE Alu -1 149 1 8 1007 461 219 0 113 chr4 55397935 55397959 -100232161 - ID_B1 SINE B4 0 224 61 8 1007 238 274 150 50 chr4 55398094 55398194 -100231926 - B1F1 SINE Alu -39 110 1 8 1007 243 173 0 0 chr4 55398349 55398401 -100231719 + GA-rich Low_complexity Low_complexity 3 54 0 8 1007 250 276 99 41 chr4 55399147 55399268 -100230852 - L1M4 LINE L1 -1032 5114 4987 8 1007 895 218 70 128 chr4 55399427 55399842 -100230278 + RMER10A LTR ERVL 8 398 0 8 1007 332 286 82 0 chr4 55400089 55400187 -100229933 - ID_B1 SINE B4 -27 197 92 8 1007 24 0 0 0 chr4 55400279 55400303 -100229817 + AT_rich Low_complexity Low_complexity 1 24 0 8 1007 1204 48 7 0 chr4 55400304 55400449 -100229671 + B1_Mus2 SINE Alu 2 147 0 8 1007 482 218 95 24 chr4 55400456 55400625 -100229495 - L1M4 LINE L1 -1698 4448 4268 8 1007 225 171 0 24 chr4 55400757 55400799 -100229321 - L1_Mur2 LINE L1 -2075 3802 3762 8 1007 284 269 159 44 chr4 55400797 55401093 -100229027 - L1M4 LINE L1 -2413 3733 3404 8 1007 278 172 102 51 chr4 55401147 55401245 -100228875 - Lx6 LINE L1 0 7460 7358 8 1007 306 0 0 0 chr4 55401248 55401282 -100228838 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1007 272 268 143 61 chr4 55401421 55401798 -100228322 - L1M4 LINE L1 -3502 2644 2237 8 1007 209 0 97 0 chr4 55403713 55403744 -100226376 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 8 1007 24 32 0 0 chr4 55405122 55405153 -100224967 + AT_rich Low_complexity Low_complexity 1 31 0 8 1007 757 142 42 21 chr4 55405984 55406128 -100223992 - B1_Mus1 SINE Alu 0 148 2 8 1007 1609 26 5 5 chr4 55406229 55406421 -100223699 - B2_Mm1a SINE B2 0 193 2 8 1007 315 246 195 6 chr4 55406425 55406531 -100223589 - B1_Mur1 SINE Alu -27 120 3 8 1007 1134 56 14 7 chr4 55406590 55406735 -100223385 + B1_Mus2 SINE Alu 2 147 0 8 1007 23 33 0 0 chr4 55406771 55406801 -100223319 + AT_rich Low_complexity Low_complexity 1 30 0 8 1007 329 241 188 26 chr4 55407040 55407232 -100222888 - L1MC4 LINE L1 -658 7384 7162 8 1007 425 237 137 55 chr4 55407746 55407929 -100222191 - B3A SINE B2 0 198 1 8 1007 424 219 125 0 chr4 55408025 55408121 -100221999 + PB1D10 SINE Alu 10 117 0 8 1007 1006 129 37 16 chr4 55408455 55408644 -100221476 + B2_Mm2 SINE B2 3 195 0 8 1007 720 105 158 0 chr4 55408667 55408800 -100221320 + ORR1A3 LTR MaLR 118 271 -55 8 1007 277 62 20 20 chr4 55408946 55408995 -100221125 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 8 1007 882 107 43 0 chr4 55408995 55409135 -100220985 - B1_Mus1 SINE Alu 0 148 3 8 1007 3687 19 2 2 chr4 55409665 55410130 -100219990 - LTRIS_Mm LTR ERV1 -17 465 1 8 1007 801 58 0 0 chr4 55410345 55410448 -100219672 + (TC)n Simple_repeat Simple_repeat 1 103 0 8 1007 682 273 23 23 chr4 55410543 55410719 -100219401 - ID_B1 SINE B4 -38 186 11 8 1007 219 140 0 0 chr4 55411468 55411518 -100218602 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1007 513 0 0 0 chr4 55412222 55412279 -100217841 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1007 216 179 0 0 chr4 55412668 55412707 -100217413 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1007 509 321 98 24 chr4 55412735 55412990 -100217130 - B4A SINE B4 -18 274 1 8 1007 494 178 18 45 chr4 55413258 55413366 -100216754 - MTE2a LTR MaLR 0 379 275 8 1007 348 133 0 16 chr4 55413366 55413427 -100216693 + MTD LTR MaLR 1 60 -361 8 1007 3245 157 110 13 chr4 55413427 55414045 -100216075 - RLTR33 LTR ERVK 0 678 1 8 1007 1475 239 12 15 chr4 55414191 55414522 -100215598 + MTD LTR MaLR 76 405 -14 8 1007 231 233 151 0 chr4 55414535 55414557 -100215563 - MTE2a LTR MaLR -100 279 251 8 1007 186 43 0 0 chr4 55414557 55414580 -100215540 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 8 1007 246 180 80 0 chr4 55414580 55414630 -100215490 - MTE2a LTR MaLR -130 249 196 8 1007 417 226 59 0 chr4 55414625 55414727 -100215393 + MTE2b-int LTR MaLR 1473 1580 0 8 1007 304 236 144 41 chr4 55414752 55414847 -100215273 + MTE2b LTR MaLR 22 126 -253 8 1007 1525 91 23 19 chr4 55414847 55415258 -100214862 - RLTR45 LTR ERVK 0 482 19 8 1007 1723 118 9 53 chr4 55415258 55415580 -100214540 - RLTRETN_Mm LTR ERVK 0 322 15 8 1007 595 192 117 19 chr4 55415779 55415933 -100214187 + MTE2b LTR MaLR 195 363 -16 8 1007 182 315 14 14 chr4 55416879 55416953 -100213167 - L2c LINE L2 -228 3159 3086 8 1007 396 88 0 0 chr4 55417392 55417449 -100212671 + (T)n Simple_repeat Simple_repeat 1 57 0 8 1007 773 40 0 0 chr4 55417449 55417550 -100212570 - B1_Mus2 SINE Alu 0 147 47 8 1007 311 207 70 47 chr4 55417492 55417578 -100212542 - RLTR25B LTR ERVK -519 509 422 8 1007 344 313 35 9 chr4 55417902 55418018 -100212102 + MIRb SINE MIR 20 138 -130 8 1007 330 115 0 0 chr4 55418058 55418110 -100212010 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1007 1622 239 7 63 chr4 55418159 55418570 -100211550 - Lx8 LINE L1 -682 6791 6404 8 1007 406 244 56 16 chr4 55418543 55418668 -100211452 + Lx8 LINE L1 6804 6933 -540 8 1007 1433 154 117 4 chr4 55418670 55418943 -100211177 + MTD LTR MaLR 1 304 -115 8 1007 1624 248 67 38 chr4 55419003 55419509 -100210611 + Lx8 LINE L1 6927 7447 -26 8 1007 262 292 83 19 chr4 55419577 55419685 -100210435 + LTR33A_ LTR ERVL 23 137 -394 8 1007 2994 49 0 3 chr4 55419714 55420103 -100210017 - MTA_Mm LTR MaLR 0 396 9 8 1007 269 70 47 0 chr4 55420705 55420748 -100209372 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 8 1007 1060 69 7 14 chr4 55421464 55421611 -100208509 + B1_Mus2 SINE Alu 1 146 -1 8 1007 204 200 0 0 chr4 55422197 55422237 -100207883 + C-rich Low_complexity Low_complexity 1 40 0 8 1007 594 250 81 11 chr4 55422417 55422603 -100207517 - MLT1C LTR MaLR -41 426 228 8 1007 3204 53 28 2 chr4 55422716 55423113 -100207007 + MTB_Mm LTR MaLR 1 407 0 8 1007 235 91 0 0 chr4 55423510 55423543 -100206577 + RMER15 LTR ERVL 88 120 -455 8 1007 1835 152 51 58 chr4 55423545 55423957 -100206163 + RMER17C LTR ERVK 1 409 -1 8 1007 306 125 0 0 chr4 55424507 55424555 -100205565 + (TCCG)n Simple_repeat Simple_repeat 4 51 0 8 1007 642 300 216 18 chr4 55424604 55424882 -100205238 + RMER15 LTR ERVL 232 564 -11 8 1007 659 239 7 0 chr4 55424952 55425094 -100205026 - ID_B1 SINE B4 -1 223 81 8 1007 577 274 12 14 chr4 55425336 55425488 -100204632 + ID_B1 SINE B4 81 230 -62 8 1007 386 248 58 0 chr4 55426313 55426434 -100203686 + MLT2B4 LTR ERVL 1 128 -428 8 1007 476 326 20 25 chr4 55426440 55426638 -100203482 + MLT1A LTR MaLR 174 370 -4 8 1007 402 74 0 0 chr4 55427040 55427094 -100203026 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1007 378 61 0 0 chr4 55427805 55427854 -100202266 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 8 1007 566 311 45 20 chr4 55427868 55428068 -100202052 - ID_B1 SINE B4 -17 207 3 8 1007 509 238 74 0 chr4 55428069 55428191 -100201929 - B1F SINE Alu -17 132 2 8 1007 22 35 0 0 chr4 55428618 55428647 -100201473 + AT_rich Low_complexity Low_complexity 1 29 0 8 1007 342 115 0 0 chr4 55429236 55429288 -100200832 + (GGA)n Simple_repeat Simple_repeat 1 52 0 8 1007 324 120 0 0 chr4 55429848 55429898 -100200222 + (T)n Simple_repeat Simple_repeat 1 50 0 8 1007 443 52 0 0 chr4 55429903 55429961 -100200159 + RMER6D LTR ERVK 1 58 -662 8 1007 1829 168 92 116 chr4 55429962 55430454 -100199666 + RMER16 LTR ERVK 1 480 -53 8 1007 984 24 8 0 chr4 55430477 55430603 -100199517 - B1_Mus1 SINE Alu 0 148 22 8 1007 452 87 0 0 chr4 55430603 55430672 -100199448 + RMER16 LTR ERVK 465 533 0 8 1007 1687 152 67 30 chr4 55430681 55430964 -100199156 + RMER6C LTR ERVK 76 367 -323 8 1007 288 0 0 0 chr4 55430964 55430996 -100199124 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1007 1687 152 67 30 chr4 55430996 55431079 -100199041 + RMER6C LTR ERVK 368 455 -235 8 1007 4429 44 42 19 chr4 55431079 55431704 -100198416 + RLTR6_Mm LTR ERV1 1 639 -15 8 1007 6567 24 48 17 chr4 55431705 55432509 -100197611 + RLTR6-int LTR ERV1 1 829 -6949 8 1007 258 115 19 0 chr4 55432535 55432587 -100197533 + MMVL30-int LTR ERV1 325 377 -2922 8 1007 17213 38 41 15 chr4 55432935 55435787 -100194333 + MMVL30-int LTR ERV1 772 3698 0 8 1007 1833 63 88 37 chr4 55435787 55436082 -100194038 + RLTR6_Mm LTR ERV1 1 310 -344 8 1007 834 59 0 0 chr4 55436081 55436200 -100193920 + RLTR6_Mm LTR ERV1 501 619 -35 8 1007 955 87 14 207 chr4 55436200 55436490 -100193630 + RMER6C LTR ERVK 428 690 0 8 1007 627 285 21 11 chr4 55436499 55436687 -100193433 - ORR1E LTR MaLR -169 190 1 8 1007 810 284 118 23 chr4 55437119 55437465 -100192655 - MLT1D LTR MaLR -10 495 117 8 1007 181 0 0 65 chr4 55437472 55437503 -100192617 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1007 415 333 0 65 chr4 55437523 55437677 -100192443 - RSINE1 SINE B4 -19 146 3 8 1007 271 203 17 0 chr4 55437716 55437775 -100192345 - MLT1D LTR MaLR -545 82 23 8 1007 291 239 0 145 chr4 55437816 55437899 -100192221 - B4 SINE B4 0 292 222 8 1007 711 310 0 16 chr4 55437949 55438139 -100191981 - B3A SINE B2 -11 187 1 8 1007 805 246 29 51 chr4 55438171 55438428 -100191692 - B4 SINE B4 -46 246 1 8 1007 1186 81 121 6 chr4 55438433 55438606 -100191514 - B2_Mm2 SINE B2 -2 193 1 8 1007 205 182 0 35 chr4 55439469 55439526 -100190594 + CT-rich Low_complexity Low_complexity 2 56 0 8 1007 656 176 0 16 chr4 55439659 55439780 -100190340 + PB1D9 SINE Alu 1 119 -1 8 1007 198 118 0 0 chr4 55439802 55439836 -100190284 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1007 262 268 12 24 chr4 55439864 55439948 -100190172 + B4A SINE B4 1 83 -209 8 1007 7692 133 27 36 chr4 55439962 55440592 -100189528 + Lx6 LINE L1 4579 5194 -686 8 1007 879 132 66 7 chr4 55440592 55440729 -100189391 - B1_Mus2 SINE Alu -2 145 1 9 1007 7692 133 27 36 chr4 55440729 55441321 -100188799 + Lx6 LINE L1 5195 5785 -95 8 1007 1099 81 0 0 chr4 55441321 55441457 -100188663 + B1_Mus1 SINE Alu 1 136 -12 9 1007 560 27 27 0 chr4 55441457 55441530 -100188590 + (GAAAA)n Simple_repeat Simple_repeat 5 79 0 9 1007 7692 195 38 45 chr4 55441530 55442467 -100187653 + Lx6 LINE L1 5786 6739 -721 8 1007 1235 48 0 0 chr4 55442467 55442614 -100187506 + B1_Mus2 SINE Alu 1 147 0 9 1007 5709 201 39 45 chr4 55442614 55442672 -100187448 + Lx6 LINE L1 6740 6795 -665 8 1007 2069 154 91 3 chr4 55442672 55442733 -100187387 + MTC LTR MaLR 3 71 -350 9 1007 1456 55 22 5 chr4 55442733 55442917 -100187203 + B2_Mm2 SINE B2 1 187 -8 9 1007 2069 154 91 3 chr4 55442917 55443239 -100186881 + MTC LTR MaLR 72 419 -2 9 1007 5709 201 39 45 chr4 55443239 55443286 -100186834 + Lx6 LINE L1 6796 6832 -628 8 1008 325 93 0 0 chr4 55443762 55443805 -100186315 + Lx7 LINE L1 6841 6883 -813 9 1008 454 107 39 0 chr4 55443808 55443911 -100186209 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 9 1008 2070 233 287 15 chr4 55443928 55444923 -100185197 + RMER1C Other Other 74 1340 -2 9 1008 757 276 0 19 chr4 55444948 55445103 -100185017 - RSINE1 SINE B4 -12 153 2 9 1008 245 327 17 70 chr4 55445103 55445139 -100184981 + MLT-int LTR MaLR 845 874 -861 9 1008 238 304 68 25 chr4 55445274 55445392 -100184728 + MTD LTR MaLR 1 123 -296 9 1008 2885 60 14 0 chr4 55445395 55445763 -100184357 - MTB LTR MaLR 0 400 28 9 1008 1215 231 34 67 chr4 55445762 55445904 -100184216 + MTD LTR MaLR 133 268 -151 9 1008 1494 37 26 41 chr4 55445904 55446099 -100184021 - B2_Mm1a SINE B2 -1 192 1 9 1008 1215 231 34 67 chr4 55446099 55446253 -100183867 + MTD LTR MaLR 269 419 0 9 1008 268 170 21 0 chr4 55446463 55446510 -100183610 + Lx8 LINE L1 6449 6496 -977 9 1008 893 209 139 10 chr4 55446530 55446738 -100183382 + Lx8 LINE L1 6552 6786 -687 9 1008 420 20 0 0 chr4 55446739 55446788 -100183332 + (TATG)n Simple_repeat Simple_repeat 4 52 0 9 1008 1376 95 11 0 chr4 55446826 55447015 -100183105 + B2_Mm1t SINE B2 1 191 -2 9 1008 784 167 8 0 chr4 55447015 55447141 -100182979 - B1_Mus1 SINE Alu -16 132 6 9 1008 2009 262 72 28 chr4 55447161 55447812 -100182308 + Lx8 LINE L1 6792 7471 -2 9 1008 1008 85 35 14 chr4 55447830 55447973 -100182147 + B1_Mus1 SINE Alu 1 146 -2 9 1008 720 219 0 0 chr4 55447974 55448138 -100181982 + GA-rich Low_complexity Low_complexity 3 166 0 9 1008 2789 129 21 17 chr4 55448496 55448915 -100181205 + MTC LTR MaLR 1 421 0 9 1008 1505 33 43 0 chr4 55448954 55449138 -100180982 - B2_Mm1a SINE B2 0 193 2 9 1008 829 47 0 0 chr4 55449195 55449301 -100180819 - B1_Mus2 SINE Alu -40 107 2 9 1008 575 211 58 36 chr4 55449301 55449324 -100180796 - B4 SINE B4 -83 174 69 9 1008 226 233 0 52 chr4 55449328 55449405 -100180715 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 9 1008 212 250 0 0 chr4 55449390 55449430 -100180690 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1008 709 265 92 0 chr4 55449455 55449640 -100180480 - Lx8 LINE L1 -354 7119 6918 9 1008 546 284 104 52 chr4 55449891 55450159 -100179961 + Zaphod DNA Tip100 3673 3954 -77 9 1008 424 231 183 0 chr4 55450151 55450255 -100179865 - B1F SINE Alu -3 146 24 9 1008 578 269 49 7 chr4 55450396 55450538 -100179582 + B4A SINE B4 1 148 -144 9 1008 451 275 76 0 chr4 55450538 55450669 -100179451 - Lx8 LINE L1 -419 7054 6914 9 1008 501 88 0 0 chr4 55450735 55450815 -100179305 + (TG)n Simple_repeat Simple_repeat 1 80 0 9 1008 404 278 27 36 chr4 55450815 55450927 -100179193 - RSINE1 SINE B4 -40 125 15 9 1008 226 301 0 0 chr4 55450966 55451039 -100179081 + L1MEg LINE L1 2103 2175 -4225 9 1008 893 269 19 0 chr4 55451046 55451254 -100178866 + B3 SINE B2 1 212 -4 9 1008 331 265 23 117 chr4 55451289 55451460 -100178660 + L1MEg LINE L1 2176 2330 -4085 9 1008 1054 251 0 0 chr4 55451461 55451672 -100178448 + B3 SINE B2 1 211 -5 9 1008 429 20 0 0 chr4 55451679 55451729 -100178391 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1008 243 278 216 0 chr4 55451744 55451841 -100178279 - PB1 SINE Alu -7 120 3 9 1008 3333 134 211 22 chr4 55452017 55452651 -100177469 - RMER6A LTR ERVK 0 756 3 9 1008 267 345 205 24 chr4 55452656 55453036 -100177084 - L2 LINE L2 -417 3002 2554 9 1008 1206 215 164 16 chr4 55453038 55453229 -100176891 - ORR1E LTR MaLR -1 358 121 9 1008 4238 50 4 0 chr4 55453229 55453730 -100176390 + RLTR1C LTR ERV1 1 503 0 9 1008 1206 215 164 16 chr4 55453730 55453850 -100176270 - ORR1E LTR MaLR -239 120 1 9 1008 334 333 130 0 chr4 55453850 55453988 -100176132 - L2 LINE L2 -860 2559 2404 9 1008 1231 115 48 29 chr4 55454010 55454216 -100175904 + URR1B DNA MER1_type 13 222 -3 9 1008 227 329 101 23 chr4 55454988 55455296 -100174824 - L2 LINE L2 -1257 2162 1831 9 1008 399 243 42 59 chr4 55455790 55455908 -100174212 - PB1D10 SINE Alu 0 117 2 9 1008 505 262 41 8 chr4 55455999 55456122 -100173998 + ID_B1 SINE B4 89 215 -9 9 1008 303 287 42 60 chr4 55456828 55456995 -100173125 + YREP_Mm Unknown Unknown 148 311 -1501 9 1008 656 224 24 0 chr4 55456872 55456997 -100173123 - ID_B1 SINE B4 -13 211 84 9 1008 278 283 102 19 chr4 55457154 55457262 -100172858 + PB1 SINE Alu 2 118 -9 9 1008 246 220 100 0 chr4 55457309 55457359 -100172761 + PB1D9 SINE Alu 3 57 -63 9 1008 484 215 11 15 chr4 55457408 55457524 -100172596 - PB1D10 SINE Alu -22 125 13 9 1008 226 322 78 0 chr4 55457451 55457541 -100172579 - B4A SINE B4 -119 173 77 9 1008 782 189 165 0 chr4 55457749 55457913 -100172207 - B3 SINE B2 -25 191 1 9 1008 340 219 12 146 chr4 55457913 55457969 -100172151 - L1MEb LINE L1 -2358 3788 3744 9 1008 1655 27 0 0 chr4 55457969 55458154 -100171966 - B2_Mm1a SINE B2 -7 186 2 9 1008 340 221 12 158 chr4 55458154 55458291 -100171829 - L1MEb LINE L1 -2403 3743 3638 9 1008 1255 48 0 0 chr4 55458291 55458438 -100171682 - B1_Mus2 SINE Alu 0 147 1 9 1008 332 231 15 195 chr4 55458438 55458591 -100171529 - L1MEb LINE L1 -2509 3637 3482 9 1008 612 0 0 0 chr4 55458598 55458666 -100171454 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 9 1008 1114 76 0 7 chr4 55458668 55458814 -100171306 - B2_Mm2 SINE B2 -50 145 1 9 1008 583 307 8 8 chr4 55458819 55459085 -100171035 - L1M2 LINE L1 -2626 3517 3252 9 1008 683 104 0 9 chr4 55459088 55459195 -100170925 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 9 1008 1001 289 121 24 chr4 55459197 55459229 -100170891 - L1M2 LINE L1 -2841 3302 3272 9 1008 1222 42 0 0 chr4 55459229 55459371 -100170749 - B1_Mus2 SINE Alu -1 146 5 9 1008 1001 289 121 24 chr4 55459371 55459700 -100170420 - L1M2 LINE L1 -2872 3271 2908 9 1008 1126 30 15 0 chr4 55459700 55459833 -100170287 + B1_Mus2 SINE Alu 3 137 -10 9 1008 216 0 0 0 chr4 55459833 55459857 -100170263 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1008 1001 289 121 24 chr4 55459857 55460292 -100169828 - L1M2 LINE L1 -3236 2907 2427 9 1008 951 209 24 14 chr4 55460327 55460536 -100169584 - B3 SINE B2 -2 214 4 9 1008 335 284 62 16 chr4 55460780 55460909 -100169211 - L1MEb LINE L1 -5130 1006 872 9 1008 267 31 0 0 chr4 55461034 55461066 -100169054 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1008 1172 41 0 58 chr4 55461066 55461222 -100168898 - B1_Mus1 SINE Alu 0 148 2 9 1008 459 0 0 0 chr4 55461932 55461983 -100168137 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1008 242 193 0 17 chr4 55462252 55462310 -100167810 + A-rich Low_complexity Low_complexity 4 60 0 9 1008 1052 75 8 0 chr4 55462313 55462447 -100167673 + B1_Mus2 SINE Alu 1 135 -12 9 1008 1075 95 12 12 chr4 55462447 55462618 -100167502 + (GAAAA)n Simple_repeat Simple_repeat 1 171 0 9 1008 261 128 0 0 chr4 55463091 55463138 -100166982 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1008 1322 14 0 0 chr4 55463139 55463286 -100166834 - B1_Mm SINE Alu 0 147 1 9 1008 250 286 39 0 chr4 55463376 55463453 -100166667 - MER5A1 DNA MER1_type -53 113 34 9 1008 1111 201 5 0 chr4 55463980 55464189 -100165931 + B3 SINE B2 1 210 -6 9 1008 181 339 0 0 chr4 55464442 55464498 -100165622 + MIRm SINE MIR 91 146 -130 9 1008 180 356 27 0 chr4 55465072 55465145 -100164975 + L2 LINE L2 66 140 -3279 9 1008 258 32 0 0 chr4 55465845 55465876 -100164244 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1008 194 119 0 45 chr4 55465945 55465989 -100164131 + (TATG)n Simple_repeat Simple_repeat 2 43 0 9 1008 615 293 29 0 chr4 55466005 55466145 -100163975 - RSINE1 SINE B4 -16 149 6 9 1008 820 278 18 50 chr4 55466154 55466374 -100163746 - B4A SINE B4 -75 217 5 9 1008 182 320 49 37 chr4 55466506 55466587 -100163533 + L2c LINE L2 3268 3349 -38 9 1008 267 31 0 0 chr4 55466628 55466660 -100163460 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 9 1008 248 352 99 19 chr4 55466720 55466882 -100163238 + MIRc SINE MIR 72 246 -22 9 1008 612 304 50 12 chr4 55467379 55467539 -100162581 - ID_B1 SINE B4 -24 200 35 9 1008 1310 251 81 15 chr4 55467547 55467882 -100162238 + ORR1D2 LTR MaLR 14 370 0 9 1008 2662 206 101 8 chr4 55468019 55468681 -100161439 + L1_Mur3 LINE L1 3730 4453 -1427 9 1008 1235 44 6 0 chr4 55468679 55468837 -100161283 + L1Md_F3 LINE L1 6412 6570 -14 9 1008 1008 109 14 159 chr4 55468866 55468976 -100161144 + B2_Mm2 SINE B2 1 101 -94 9 1008 206 32 0 31 chr4 55468976 55469008 -100161112 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 9 1008 1134 65 0 0 chr4 55469008 55469146 -100160974 - B1_Mm SINE Alu -9 138 1 9 1008 1008 109 14 159 chr4 55469146 55469241 -100160879 + B2_Mm2 SINE B2 102 176 -19 9 1008 2138 174 65 99 chr4 55469241 55469652 -100160468 + L1_Mur3 LINE L1 4451 4843 -1037 9 1008 1422 66 11 0 chr4 55469652 55469835 -100160285 + B2_Mm1t SINE B2 1 185 -8 9 1008 2138 174 65 99 chr4 55469835 55469990 -100160130 + L1_Mur3 LINE L1 4844 4998 -882 9 1008 218 320 13 26 chr4 55470320 55470397 -100159723 + MIR SINE MIR 41 116 -92 9 1008 844 239 96 72 chr4 55470485 55470818 -100159302 + RMER13A LTR ERVK 14 354 -506 9 1008 186 43 0 0 chr4 55471691 55471714 -100158406 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1008 1298 96 23 0 chr4 55471714 55471891 -100158229 - B2_Mm2 SINE B2 -13 182 2 9 1008 711 0 0 0 chr4 55471899 55471978 -100158142 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1008 1172 64 0 0 chr4 55471980 55472121 -100157999 - B1_Mm SINE Alu -6 141 1 9 1008 933 58 0 0 chr4 55472139 55472259 -100157861 + (TTCC)n Simple_repeat Simple_repeat 3 122 0 9 1008 2984 228 18 22 chr4 55472441 55473038 -100157082 + Lx5 LINE L1 6450 7044 -6 9 1008 308 303 40 0 chr4 55473058 55473157 -100156963 - PB1D10 SINE Alu -13 104 2 9 1008 252 360 94 14 chr4 55473162 55473300 -100156820 - MER5B DNA MER1_type -7 171 23 1 1008 252 86 0 0 chr4 55473999 55474034 -100156086 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1008 1183 75 0 0 chr4 55474034 55474180 -100155940 - B1_Mus2 SINE Alu 0 147 2 1 1008 198 0 0 0 chr4 55474619 55474641 -100155479 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1008 250 365 63 67 chr4 55475194 55475417 -100154703 - MER102a DNA MER1_type -108 222 1 1 1008 360 350 12 65 chr4 55475417 55475584 -100154536 + MER5B DNA MER1_type 7 164 -14 1 1008 204 255 18 18 chr4 55475842 55475898 -100154222 + GA-rich Low_complexity Low_complexity 3 58 0 1 1008 354 45 0 0 chr4 55475900 55475944 -100154176 + (GGA)n Simple_repeat Simple_repeat 2 45 0 1 1008 1251 113 89 0 chr4 55476012 55476215 -100153905 - URR1B DNA MER1_type 0 225 5 1 1008 659 324 19 67 chr4 55476260 55476354 -100153766 + B4 SINE B4 4 95 -197 1 1008 1221 34 0 14 chr4 55476354 55476502 -100153618 + B1_Mm SINE Alu 1 146 -1 1 1008 659 324 19 67 chr4 55476502 55476628 -100153492 + B4 SINE B4 96 213 -79 1 1008 191 61 30 0 chr4 55476628 55476661 -100153459 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1008 659 324 19 67 chr4 55476661 55476707 -100153413 + B4 SINE B4 214 258 -34 1 1008 331 280 139 27 chr4 55477383 55477570 -100152550 + L1MB3 LINE L1 5933 6140 -43 1 1008 875 273 10 5 chr4 55477587 55477786 -100152334 + ID_B1 SINE B4 25 224 0 1 1008 229 133 21 43 chr4 55478127 55478208 -100151912 + T-rich Low_complexity Low_complexity 16 94 0 1 1008 1157 75 0 7 chr4 55478208 55478356 -100151764 - B1_Mus2 SINE Alu 0 147 1 1 1008 229 133 21 43 chr4 55478356 55478368 -100151752 + T-rich Low_complexity Low_complexity 4 15 0 1 1008 352 313 44 7 chr4 55478836 55478971 -100151149 + MER117 DNA MER1_type 32 171 -26 1 1008 360 0 0 0 chr4 55479256 55479296 -100150824 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1008 391 283 40 40 chr4 55479297 55479438 -100150682 - B1F SINE Alu -8 141 1 1 1008 3640 118 28 23 chr4 55479527 55480091 -100150029 - RMER2 LTR ERV1 0 567 1 1 1008 816 271 31 36 chr4 55480173 55480395 -100149725 + ID_B1 SINE B4 1 221 -3 1 1008 2330 231 81 28 chr4 55480448 55481738 -100148382 - RMER1B Other Other -9 1057 10 1 1008 363 171 256 0 chr4 55481752 55481834 -100148286 - RMER1B Other Other -730 336 234 1 1008 244 317 46 92 chr4 55481993 55482146 -100147974 + MT2B2 LTR ERVL 140 285 -299 1 1008 374 274 41 47 chr4 55482037 55482166 -100147954 + B1F SINE Alu 15 144 -5 1 1008 1138 82 0 7 chr4 55482169 55482317 -100147803 + B1_Mm SINE Alu 1 147 0 1 1008 258 32 0 0 chr4 55482317 55482348 -100147772 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1008 465 19 0 0 chr4 55482535 55482589 -100147531 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1008 630 0 0 0 chr4 55482589 55482658 -100147462 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1008 842 228 156 13 chr4 55482671 55482902 -100147218 - B4A SINE B4 -28 264 1 1 1008 645 191 13 72 chr4 55482906 55483058 -100147062 - B1F SINE Alu -6 143 1 1 1008 206 0 0 65 chr4 55483286 55483317 -100146803 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1008 659 222 16 16 chr4 55483364 55483492 -100146628 + RSINE1 SINE B4 2 129 -36 1 1008 357 24 0 0 chr4 55483527 55483569 -100146551 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1008 573 15 0 0 chr4 55483569 55483634 -100146486 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1008 652 279 57 14 chr4 55484579 55484859 -100145261 + B4 SINE B4 1 292 0 1 1008 635 0 13 0 chr4 55484883 55484958 -100145162 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 1008 257 283 35 3 chr4 55484979 55485063 -100145057 - ORR1D1 LTR MaLR -256 103 16 1 1008 709 247 185 56 chr4 55485548 55485851 -100144269 + ORR1E LTR MaLR 10 351 -8 1 1008 786 279 53 4 chr4 55485973 55486239 -100143881 + B4A SINE B4 4 282 -10 1 1008 342 183 0 0 chr4 55486254 55486325 -100143795 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1008 412 136 96 24 chr4 55486325 55486408 -100143712 + HAL1-3A_ME LINE L1 1976 2064 -794 1 1008 1226 41 7 0 chr4 55486628 55486774 -100143346 - B1_Mus1 SINE Alu 0 148 2 1 1008 436 301 20 14 chr4 55487719 55487867 -100142253 + B1F2 SINE Alu 1 149 0 1 1008 209 128 26 0 chr4 55488078 55488117 -100142003 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1008 263 257 14 0 chr4 55488118 55488192 -100141928 + L1M3 LINE L1 5594 5668 -512 1 1008 1455 212 28 71 chr4 55488505 55488901 -100141219 + RMER16 LTR ERVK 155 533 0 1 1008 238 86 0 0 chr4 55489088 55489123 -100140997 + PB1D9 SINE Alu 2 36 -84 1 1008 838 70 0 0 chr4 55489119 55489233 -100140887 - B1_Mus1 SINE Alu -32 116 3 1 1008 496 254 47 8 chr4 55489127 55489254 -100140866 - B4 SINE B4 -94 198 67 1 1008 296 287 27 18 chr4 55489468 55489498 -100140622 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 1 1008 432 0 0 0 chr4 55489498 55489546 -100140574 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1008 374 251 17 15 chr4 55489546 55489862 -100140258 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1 1008 875 213 63 9 chr4 55490321 55490544 -100139576 - ORSL-2a DNA Tip100 -2 340 106 1 1008 180 0 0 0 chr4 55491155 55491175 -100138945 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1008 347 225 42 0 chr4 55492771 55492842 -100137278 + PB1D10 SINE Alu 34 107 -10 1 1008 320 241 0 60 chr4 55492864 55492948 -100137172 + ID4_ SINE ID 5 83 0 1 1008 1241 48 0 0 chr4 55494435 55494582 -100135538 + B1_Mus1 SINE Alu 2 148 0 1 1008 401 323 16 0 chr4 55494697 55494824 -100135296 + ID_B1 SINE B4 92 220 -4 1 1008 265 276 0 0 chr4 55494840 55494898 -100135222 + ID4_ SINE ID 26 83 0 1 1008 342 0 0 0 chr4 55495358 55495396 -100134724 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1008 477 0 0 0 chr4 55495403 55495456 -100134664 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1008 266 354 39 29 chr4 55495456 55495550 -100134570 + MER46C DNA MER2_type 237 333 -5 1 1008 743 91 213 8 chr4 55495550 55495672 -100134448 + B1_Mus1 SINE Alu 1 147 -1 1 1008 38 0 0 0 chr4 55495724 55495762 -100134358 + AT_rich Low_complexity Low_complexity 1 38 0 1 1008 864 171 0 41 chr4 55495769 55495915 -100134205 - B1_Mur2 SINE Alu -7 142 3 1 1008 258 280 27 0 chr4 55496433 55496508 -100133612 - Tigger7 DNA MER2_type -8 2483 2407 1 1008 5489 68 0 0 chr4 55496786 55497475 -100132645 + L1Md_T LINE L1 5894 6582 0 1 1008 765 254 67 19 chr4 55497612 55497821 -100132299 + ID_B1 SINE B4 1 219 -5 1 1008 200 284 170 50 chr4 55498069 55498210 -100131910 - L2b LINE L2 -19 3356 3199 1 1008 452 282 127 12 chr4 55498330 55498495 -100131625 - MER5A DNA MER1_type -5 184 1 1 1008 392 315 94 17 chr4 55499249 55499430 -100130690 + MIR3 SINE MIR 7 201 -7 1 1008 316 277 133 9 chr4 55499883 55499996 -100130124 - MLT1C LTR MaLR 0 467 341 1 1008 731 296 41 90 chr4 55500111 55500401 -100129719 + B4A SINE B4 1 276 -16 1 1008 432 281 141 0 chr4 55500456 55500577 -100129543 + ID_B1 SINE B4 68 205 -19 2 1008 261 336 35 90 chr4 55500475 55500619 -100129501 + B1_Mur2 SINE Alu 6 141 -8 3 1008 228 314 43 0 chr4 55501302 55501372 -100128748 + ID_B1 SINE B4 92 164 -60 4 1008 885 45 0 0 chr4 55501384 55501494 -100128626 + (GA)n Simple_repeat Simple_repeat 1 110 0 5 1008 363 352 82 56 chr4 55501553 55501872 -100128248 + LTR16B LTR ERVL 27 353 -110 6 1008 22 0 0 0 chr4 55501893 55501915 -100128205 + AT_rich Low_complexity Low_complexity 1 22 0 7 1008 442 308 98 53 chr4 55501980 55502259 -100127861 - B4A SINE B4 0 292 4 8 1008 324 309 82 29 chr4 55502551 55502739 -100127381 + L1M2 LINE L1 3029 3221 -2925 9 1008 925 162 25 6 chr4 55503297 55503458 -100126662 - URR1A DNA MER1_type 0 226 63 1 1008 360 0 0 0 chr4 55503946 55503986 -100126134 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1008 240 296 40 13 chr4 55503988 55504111 -100126009 + MIR SINE MIR 44 165 -111 1 1008 438 289 15 30 chr4 55504119 55504251 -100125869 + B4 SINE B4 11 140 -152 1 1008 2567 241 48 97 chr4 55504258 55504632 -100125488 + Lx8 LINE L1 6634 7022 -451 1 1008 1133 95 0 0 chr4 55504632 55504779 -100125341 + B1_Mus2 SINE Alu 1 147 0 1 1008 1363 55 66 11 chr4 55504780 55504938 -100125182 + B2_Mm1t SINE B2 1 160 -33 1 1008 531 0 0 0 chr4 55504938 55504997 -100125123 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1 1008 1363 55 66 11 chr4 55504997 55505021 -100125099 + B2_Mm1t SINE B2 161 192 -1 1 1008 2567 241 48 97 chr4 55505021 55505400 -100124720 + Lx8 LINE L1 7023 7349 -124 1 1008 714 12 0 0 chr4 55505400 55505483 -100124637 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1008 2567 241 48 97 chr4 55505483 55505610 -100124510 + Lx8 LINE L1 7350 7472 -1 1 1008 1019 212 43 5 chr4 55505633 55505841 -100124279 - B3 SINE B2 0 216 1 1 1008 22 0 0 0 chr4 55505841 55505863 -100124257 + AT_rich Low_complexity Low_complexity 1 22 0 2 1008 786 278 46 0 chr4 55505863 55506057 -100124063 + B4 SINE B4 67 269 -23 2 1008 657 0 0 0 chr4 55506059 55506132 -100123988 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1008 477 0 0 0 chr4 55506132 55506184 -100123936 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1008 330 339 86 45 chr4 55506834 55507032 -100123088 + L1ME2 LINE L1 5666 5871 -293 2 1008 1216 48 0 13 chr4 55507036 55507185 -100122935 + B1_Mus1 SINE Alu 2 148 0 2 1008 372 193 45 11 chr4 55507249 55507338 -100122782 + PB1D10 SINE Alu 24 115 -2 2 1008 602 281 98 72 chr4 55507343 55507415 -100122705 + L1MB1 LINE L1 5812 5882 -307 2 1008 1154 65 0 0 chr4 55507415 55507553 -100122567 + B1_Mus2 SINE Alu 1 138 -9 2 1008 191 32 0 61 chr4 55507553 55507586 -100122534 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1008 602 281 98 72 chr4 55507586 55507819 -100122301 + L1MB1 LINE L1 5883 6125 -64 2 1008 370 353 52 26 chr4 55507825 55507929 -100122191 + B4 SINE B4 1 193 -95 3 1008 376 309 12 0 chr4 55507929 55508013 -100122107 + PB1D10 SINE Alu 17 101 -16 3 1008 477 0 0 0 chr4 55508018 55508071 -100122049 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1008 567 0 0 0 chr4 55508071 55508133 -100121987 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1008 1178 50 0 0 chr4 55508299 55508439 -100121681 + B1_Mm SINE Alu 1 140 -7 3 1008 723 246 2 7 chr4 55508652 55508831 -100121289 - B4 SINE B4 -93 199 21 3 1008 65 14 0 0 chr4 55511227 55511299 -100118821 + AT_rich Low_complexity Low_complexity 1 72 0 3 1008 691 300 71 24 chr4 55511303 55511515 -100118605 + ID_B1 SINE B4 3 224 0 3 1008 557 290 88 31 chr4 55511850 55512072 -100118048 + ORR1E LTR MaLR 15 249 -110 3 1008 451 267 101 20 chr4 55512072 55512221 -100117899 + MTEa LTR MaLR 3 163 -216 3 1008 290 106 0 60 chr4 55512243 55512293 -100117827 + B2_Mm2 SINE B2 6 52 -143 4 1008 235 246 0 110 chr4 55512306 55512379 -100117741 + B3 SINE B2 116 180 -36 4 1008 609 266 106 5 chr4 55512425 55512614 -100117506 + MTEa LTR MaLR 170 377 -2 3 1008 342 264 39 55 chr4 55512614 55512739 -100117381 + MTEa LTR MaLR 250 372 -7 4 1008 234 236 17 68 chr4 55512754 55512813 -100117307 - MER20 DNA MER1_type -134 85 30 4 1008 322 341 185 63 chr4 55513285 55513523 -100116597 - MIRb SINE MIR -1 267 1 4 1008 308 279 201 5 chr4 55513835 55514019 -100116101 - ID_B1 SINE B4 -1 223 4 4 1008 691 298 23 0 chr4 55514030 55514248 -100115872 - ID_B1 SINE B4 0 224 2 4 1008 655 277 124 23 chr4 55514400 55514788 -100115332 - L1MA9 LINE L1 -40 6272 5846 4 1008 355 329 48 0 chr4 55514785 55514931 -100115189 + L1M2 LINE L1 5621 5773 -518 4 1008 695 201 0 34 chr4 55514945 55515083 -100115037 + B1_Mur1 SINE Alu 5 137 -12 4 1008 459 35 0 0 chr4 55515083 55515140 -100114980 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 5 1008 686 85 19 0 chr4 55515150 55515256 -100114864 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 5 1008 34 42 0 0 chr4 55515304 55515352 -100114768 + AT_rich Low_complexity Low_complexity 1 48 0 5 1008 255 293 0 0 chr4 55515355 55515413 -100114707 + B4A SINE B4 2 59 -233 5 1008 468 103 0 0 chr4 55515413 55515423 -100114697 + (GA)n Simple_repeat Simple_repeat 2 11 0 5 1008 291 54 0 0 chr4 55515423 55515460 -100114660 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1008 468 103 0 0 chr4 55515460 55515527 -100114593 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1008 573 204 0 0 chr4 55515528 55515665 -100114455 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 1008 285 98 0 0 chr4 55516296 55516337 -100113783 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1008 1019 112 0 14 chr4 55516460 55516605 -100113515 - B1_Mus1 SINE Alu -1 147 5 5 1008 1182 43 0 0 chr4 55516838 55516977 -100113143 + B1_Mus2 SINE Alu 2 140 -7 6 1008 243 0 0 0 chr4 55516979 55517006 -100113114 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1008 636 240 13 27 chr4 55517157 55517289 -100112831 + B1_Mur1 SINE Alu 2 135 -14 6 1008 360 0 0 0 chr4 55517289 55517329 -100112791 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 6 1008 636 240 13 27 chr4 55517329 55517346 -100112774 + B1_Mur1 SINE Alu 136 149 0 6 1008 487 226 5 8 chr4 55518029 55518150 -100111970 + B4A SINE B4 28 147 -145 5 1008 318 310 58 78 chr4 55518216 55518370 -100111750 - B4 SINE B4 -140 152 2 6 1008 675 104 0 0 chr4 55518722 55518837 -100111283 + (TC)n Simple_repeat Simple_repeat 2 116 0 6 1008 414 0 0 0 chr4 55519299 55519345 -100110775 + (TAA)n Simple_repeat Simple_repeat 3 48 0 6 1008 1104 63 28 0 chr4 55519345 55519488 -100110632 + B1_Mus1 SINE Alu 2 148 0 6 1008 403 326 39 33 chr4 55519502 55519683 -100110437 - MIR SINE MIR -11 251 70 6 1008 287 259 0 0 chr4 55519833 55519891 -100110229 + ID4 SINE ID 15 72 -11 6 1008 1180 39 0 68 chr4 55519892 55520128 -100109992 + (CA)n Simple_repeat Simple_repeat 1 219 0 7 1008 402 346 46 8 chr4 55520435 55520566 -100109554 - ID_B1 SINE B4 -6 218 83 7 1008 344 190 79 10 chr4 55520568 55520669 -100109451 + L1MC LINE L1 3628 3735 -2411 7 1008 351 245 231 28 chr4 55520671 55520814 -100109306 + B4 SINE B4 1 172 -120 7 1008 242 288 69 81 chr4 55520829 55520916 -100109204 + ID_B1 SINE B4 56 141 -83 7 1008 223 182 0 64 chr4 55520879 55520926 -100109194 + B1F SINE Alu 24 67 -82 7 1008 280 240 40 40 chr4 55520929 55521029 -100109091 + L1M3 LINE L1 3722 3821 -2319 7 1008 342 154 0 0 chr4 55521051 55521103 -100109017 + MTEb LTR MaLR 1 52 -327 7 1008 333 0 0 0 chr4 55521352 55521389 -100108731 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1008 186 220 0 0 chr4 55521405 55521464 -100108656 + (CAGAC)n Simple_repeat Simple_repeat 1 59 0 7 1008 745 251 154 16 chr4 55521656 55521903 -100108217 + MTEb LTR MaLR 89 369 -10 7 1008 661 223 205 14 chr4 55521914 55522192 -100107928 + L1M3 LINE L1 3887 4217 -1923 7 1008 346 227 124 0 chr4 55522196 55522293 -100107827 - PB1D7 SINE Alu -6 114 6 8 1008 349 289 269 0 chr4 55522293 55522365 -100107755 - ID_B1 SINE B4 -3 218 4 8 1008 357 296 150 46 chr4 55522370 55522611 -100107509 + L1M3 LINE L1 4217 4500 -1643 7 1008 588 65 0 0 chr4 55522611 55522688 -100107432 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1008 357 296 150 46 chr4 55522688 55522793 -100107327 + L1M3 LINE L1 4501 4599 -1544 7 1008 966 222 19 9 chr4 55522841 55523055 -100107065 + B3 SINE B2 1 216 0 8 1008 281 328 51 28 chr4 55523063 55523239 -100106881 + L1M5 LINE L1 5655 5834 -406 8 1008 639 256 219 0 chr4 55523316 55523585 -100106535 + L1MB1 LINE L1 5787 6114 -75 8 1008 304 235 45 117 chr4 55523586 55523598 -100106522 + MT2B LTR ERVL 155 158 -443 8 1008 626 225 54 8 chr4 55523598 55523728 -100106392 + B1_Mur2 SINE Alu 1 136 -13 8 1008 324 0 0 0 chr4 55523729 55523765 -100106355 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1008 370 356 22 0 chr4 55523768 55523903 -100106217 + ID_B1 SINE B4 78 215 -9 8 1008 858 213 63 19 chr4 55523910 55524116 -100106004 + ID_B1 SINE B4 2 216 -8 9 1008 692 202 9 14 chr4 55524127 55524347 -100105773 + GA-rich Low_complexity Low_complexity 1 219 0 9 1008 270 0 0 0 chr4 55524971 55525001 -100105119 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1008 216 196 0 0 chr4 55525224 55525270 -100104850 + T-rich Low_complexity Low_complexity 1 46 0 9 1008 578 133 48 0 chr4 55525550 55525655 -100104465 + B2_Mm2 SINE B2 2 111 -84 9 1008 1256 52 0 25 chr4 55525655 55525813 -100104307 + L1_Mus2 LINE L1 6302 6455 -111 9 1008 474 259 0 9 chr4 55525975 55526084 -100104036 - PB1D10 SINE Alu -7 110 3 9 1008 477 0 0 0 chr4 55527148 55527201 -100102919 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1008 211 278 118 0 chr4 55527261 55527375 -100102745 - MIRb SINE MIR -94 174 35 9 1008 243 333 28 0 chr4 55527399 55527471 -100102649 + ID4_ SINE ID 7 80 -3 9 1008 185 94 0 30 chr4 55529531 55529564 -100100556 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1008 1174 68 0 0 chr4 55529941 55530087 -100100033 + B1_Mus1 SINE Alu 2 147 -1 1 1008 585 0 0 0 chr4 55530760 55530825 -100099295 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1008 495 0 0 0 chr4 55530829 55530884 -100099236 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1008 1153 111 184 0 chr4 55531512 55531702 -100098418 - URR1B DNA MER1_type 0 225 1 1 1008 551 238 45 30 chr4 55531715 55531849 -100098271 + ID_B1 SINE B4 79 214 -10 1 1008 201 74 0 0 chr4 55531868 55531895 -100098225 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1008 243 284 13 26 chr4 55533289 55533365 -100096755 - ID_B1 SINE B4 -1 223 149 1 1008 419 224 71 45 chr4 55533356 55533468 -100096652 + ID_B1 SINE B4 107 221 -3 1 1008 443 311 24 8 chr4 55533486 55533609 -100096511 + RSINE1 SINE B4 9 133 -32 1 1008 559 226 0 25 chr4 55534204 55534322 -100095798 + PB1D7 SINE Alu 1 115 -5 1 1008 540 156 0 0 chr4 55534355 55534464 -100095656 + GA-rich Low_complexity Low_complexity 1 109 0 1 1008 346 290 47 0 chr4 55534680 55534787 -100095333 + PB1D10 SINE Alu 2 113 -4 1 1008 207 88 0 0 chr4 55534854 55534888 -100095232 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1008 692 257 237 31 chr4 55535285 55535512 -100094608 + ID_B1 SINE B4 5 278 -14 1 1008 391 220 60 0 chr4 55536938 55537038 -100093082 + PB1D10 SINE Alu 1 106 -11 1 1008 240 191 0 0 chr4 55537123 55537165 -100092955 + B1F SINE Alu 87 128 -21 1 1008 677 245 135 5 chr4 55537192 55537385 -100092735 + ID_B1 SINE B4 5 222 -2 1 1008 198 0 0 0 chr4 55537414 55537436 -100092684 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1008 881 215 51 37 chr4 55537934 55538151 -100091969 - ID_B1 SINE B4 0 224 5 1 1008 276 362 78 8 chr4 55538464 55538592 -100091528 + B4A SINE B4 60 196 -96 1 1008 321 220 71 35 chr4 55538520 55538633 -100091487 + B1F SINE Alu 32 148 -1 1 1008 387 263 42 17 chr4 55538674 55538794 -100091326 + ID_B1 SINE B4 82 204 -20 1 1008 299 314 49 14 chr4 55538794 55538816 -100091304 + B1F SINE Alu 1 147 -2 1 1008 378 269 85 0 chr4 55538816 55538946 -100091174 - L1ME4a LINE L1 -201 5923 5783 1 1008 213 65 0 0 chr4 55540766 55540797 -100089323 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1008 29 0 0 0 chr4 55541312 55541341 -100088779 + AT_rich Low_complexity Low_complexity 1 29 0 1 1008 2426 45 0 0 chr4 55541558 55541847 -100088273 + L1Md_A LINE L1 6294 6582 0 1 1008 23 54 0 0 chr4 55545413 55545450 -100084670 + GC_rich Low_complexity Low_complexity 1 37 0 1 1008 187 79 53 0 chr4 55545528 55545566 -100084554 + (CGGGGG)n Simple_repeat Simple_repeat 2 41 0 1 1008 183 80 0 0 chr4 55545617 55545642 -100084478 + (CGG)n Simple_repeat Simple_repeat 1 25 0 1 1008 233 143 71 0 chr4 55546169 55546211 -100083909 - AmnSINE1 SINE SINE -30 545 501 1 1008 209 274 32 0 chr4 55546216 55546278 -100083842 - MIR SINE MIR -60 148 85 1 1008 276 278 156 16 chr4 55548182 55548310 -100081810 - B1F SINE Alu -1 148 3 1 1008 267 254 31 16 chr4 55548346 55548410 -100081710 - BC1_Mm scRNA scRNA -80 72 8 1 1008 286 263 47 109 chr4 55548562 55548690 -100081430 - PB1 SINE Alu -2 125 6 1 1008 420 260 48 0 chr4 55548748 55548852 -100081268 + PB1D7 SINE Alu 1 109 -11 1 1008 309 273 148 0 chr4 55548941 55549069 -100081051 + MIR SINE MIR 109 255 -7 1 1008 658 240 58 71 chr4 55549483 55549707 -100080413 - ID_B1 SINE B4 -2 222 2 1 1008 1110 99 0 0 chr4 55549983 55550447 -100079673 + (TC)n Simple_repeat Simple_repeat 1 464 0 1 1008 397 294 24 40 chr4 55550447 55550571 -100079549 - RSINE1 SINE B4 -42 123 2 1 1008 554 92 0 20 chr4 55551102 55551202 -100078918 + (TCTCTG)n Simple_repeat Simple_repeat 3 100 0 1 1008 363 44 0 0 chr4 55551202 55551246 -100078874 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1008 471 209 8 73 chr4 55551378 55551502 -100078618 - PB1D7 SINE Alu 0 120 5 1 1008 364 69 33 33 chr4 55551511 55551552 -100078568 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1008 1169 55 0 20 chr4 55551552 55551700 -100078420 - B1_Mus1 SINE Alu 0 148 4 1 1008 364 69 33 33 chr4 55551700 55551748 -100078372 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 1 1008 491 160 180 0 chr4 55551754 55551854 -100078266 - B1F SINE Alu 0 149 32 1 1008 429 269 48 0 chr4 55552067 55552171 -100077949 + PB1D10 SINE Alu 4 112 -5 1 1008 23 33 0 0 chr4 55555058 55555088 -100075032 + AT_rich Low_complexity Low_complexity 1 30 0 1 1008 773 238 85 85 chr4 55555090 55555301 -100074819 - ID_B1 SINE B4 -6 218 8 1 1008 285 281 0 58 chr4 55555318 55555405 -100074715 - ID2 SINE ID 0 83 2 1 1008 349 275 112 0 chr4 55555500 55555580 -100074540 - PB1D10 SINE Alu -28 89 1 1 1008 180 342 26 52 chr4 55555599 55555676 -100074444 + L2c LINE L2 2964 3038 -349 1 1008 707 262 54 27 chr4 55556265 55556449 -100073671 - ID_B1 SINE B4 -33 191 3 1 1008 413 250 40 11 chr4 55556502 55556620 -100073500 + PB1D7 SINE Alu 1 127 0 1 1008 452 277 48 55 chr4 55557588 55557733 -100072387 - B1F SINE Alu 0 149 6 1 1008 685 259 22 17 chr4 55557957 55558203 -100071917 + L1MA4A LINE L1 5376 5619 -681 1 1008 423 222 22 49 chr4 55558218 55558346 -100071774 - B1F SINE Alu -6 143 22 1 1008 378 272 201 6 chr4 55558349 55558523 -100071597 + L1MA4A LINE L1 5731 5938 -365 1 1008 351 0 0 0 chr4 55558539 55558578 -100071542 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1008 198 0 0 0 chr4 55558819 55558841 -100071279 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1008 632 316 163 11 chr4 55559000 55559349 -100070771 - L4 LINE RTE -105 1924 1523 1 1008 885 255 25 54 chr4 55559634 55559912 -100070208 - MER121 Unknown Unknown -135 277 8 1 1008 195 352 28 14 chr4 55560348 55560420 -100069700 - MIR SINE MIR -78 130 58 1 1008 771 245 90 0 chr4 55560452 55560640 -100069480 - ID_B1 SINE B4 -17 207 3 1 1008 371 202 168 28 chr4 55560690 55560797 -100069323 - ID_B1 SINE B4 -6 218 97 1 1008 274 263 132 0 chr4 55561116 55561192 -100068928 - PB1D7 SINE Alu -9 111 26 1 1008 373 287 28 0 chr4 55561254 55561362 -100068758 - ID_B1 SINE B4 -2 222 112 1 1008 216 0 0 0 chr4 55561369 55561393 -100068727 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1008 1095 188 131 48 chr4 55561407 55561697 -100068423 - Lx7 LINE L1 0 7696 7383 1 1008 227 284 0 0 chr4 55561727 55561794 -100068326 + A-rich Low_complexity Low_complexity 1 67 0 1 1008 2253 116 120 5 chr4 55561820 55562219 -100067901 - BGLII_A LTR ERVK 0 445 1 1 1008 4994 204 99 12 chr4 55562219 55563606 -100066514 - Lx7 LINE L1 -362 7334 5757 1 1008 272 306 163 0 chr4 55564388 55564486 -100065634 - ID_B1 SINE B4 -109 115 2 1 1008 522 0 0 0 chr4 55564828 55564886 -100065234 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1008 491 252 82 75 chr4 55564906 55565065 -100065055 - ID_B1 SINE B4 -51 173 14 1 1008 207 0 0 0 chr4 55565178 55565201 -100064919 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 1 1008 188 336 136 48 chr4 55565215 55565362 -100064758 + L2b LINE L2 3196 3355 -20 1 1008 363 231 31 43 chr4 55565589 55565690 -100064430 - PB1D10 SINE Alu -40 107 8 1 1008 211 54 26 26 chr4 55565917 55565955 -100064165 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1 1008 363 279 20 93 chr4 55565974 55566124 -100063996 - RSINE1 SINE B4 -5 160 22 1 1008 528 263 7 50 chr4 55566126 55566266 -100063854 - ID_B1 SINE B4 -7 217 84 1 1008 342 0 0 0 chr4 55566267 55566305 -100063815 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1 1008 309 305 37 0 chr4 55566306 55566388 -100063732 - PB1D7 SINE Alu -14 106 22 1 1008 450 0 0 0 chr4 55566861 55566911 -100063209 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1008 552 301 7 34 chr4 55567436 55567584 -100062536 - ID_B1 SINE B4 0 224 81 1 1008 263 232 36 0 chr4 55567633 55567689 -100062431 - MIRm SINE MIR -11 265 208 1 1008 556 280 25 42 chr4 55567762 55567957 -100062163 + ID_B1 SINE B4 35 216 -76 1 1008 222 196 36 0 chr4 55567971 55568027 -100062093 + A-rich Low_complexity Low_complexity 1 58 0 1 1008 319 308 49 16 chr4 55568200 55568322 -100061798 - PB1 SINE Alu 0 127 2 1 1008 319 276 72 16 chr4 55568327 55568452 -100061668 + Kanga1 DNA Tc2 1596 1727 -18 1 1008 628 173 78 20 chr4 55568452 55568605 -100061515 + L1MA8 LINE L1 6071 6232 -59 1 1008 624 292 21 7 chr4 55568612 55568757 -100061363 - B1F SINE Alu 0 149 3 1 1008 295 333 0 90 chr4 55568650 55568772 -100061348 - MT2B LTR ERVL -339 262 152 1 1008 216 135 27 0 chr4 55568811 55568848 -100061272 + B1F SINE Alu 56 93 -56 1 1008 444 215 214 36 chr4 55568938 55569063 -100061057 + ID_B1 SINE B4 59 213 -11 1 1008 324 0 0 0 chr4 55569063 55569099 -100061021 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1008 444 215 214 36 chr4 55569099 55569113 -100061007 + ID_B1 SINE B4 214 223 -1 1 1008 1183 181 70 4 chr4 55569130 55569357 -100060763 - ORR1D1 LTR MaLR -1 373 132 1 1008 2323 216 46 167 chr4 55569363 55569937 -100060183 - RMER1B Other Other -9 1057 518 1 1008 3622 13 2 0 chr4 55569937 55570332 -100059788 - MTA_Mm LTR MaLR 0 396 1 1 1008 2323 219 94 119 chr4 55570332 55570806 -100059314 - RMER1B Other Other -532 534 15 1 1008 4765 113 67 13 chr4 55570806 55571505 -100058615 + RMER19A LTR ERVK 1 737 0 1 1008 1721 196 102 63 chr4 55571505 55571795 -100058325 - RMER1B Other Other -705 361 44 1 1008 391 215 12 12 chr4 55572250 55572330 -100057790 - ORR1D1 LTR MaLR -220 158 79 1 1008 3123 154 84 14 chr4 55572332 55572892 -100057228 - RMER19C LTR ERVK -12 599 1 1 1008 462 218 44 62 chr4 55572892 55572999 -100057121 - ORR1D1 LTR MaLR -298 76 1 1 1008 427 185 286 0 chr4 55573268 55573387 -100056733 + ID_B1 SINE B4 1 153 -71 2 1008 268 269 36 71 chr4 55573330 55573414 -100056706 + PB1 SINE Alu 15 95 -32 2 1008 1340 133 37 0 chr4 55573771 55573989 -100056131 + URR1A DNA MER1_type 1 226 0 2 1008 2066 150 75 14 chr4 55574121 55574492 -100055628 - ORR1B1 LTR MaLR 0 394 1 2 15 230 217 28 42 chr4 55574505 55574577 -100055543 + CT-rich Low_complexity Low_complexity 1 71 0 2 1009 228 218 36 0 chr4 55574577 55574632 -100055488 - PB1D10 SINE Alu 0 117 61 2 1009 517 152 45 0 chr4 55574905 55575037 -100055083 + GA-rich Low_complexity Low_complexity 4 141 0 2 1009 673 296 93 96 chr4 55575117 55575483 -100054637 + MTD LTR MaLR 39 403 -16 2 1009 382 292 53 9 chr4 55575497 55575611 -100054509 + B1F SINE Alu 14 132 -17 2 1009 291 55 0 53 chr4 55575625 55575682 -100054438 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1009 213 132 0 0 chr4 55575675 55575713 -100054407 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 1009 258 254 0 0 chr4 55575722 55575785 -100054335 + B1F2 SINE Alu 1 63 -86 2 1009 492 18 0 0 chr4 55575865 55575922 -100054198 + (GGA)n Simple_repeat Simple_repeat 2 58 0 2 1009 800 225 103 20 chr4 55576439 55576643 -100053477 + ID_B1 SINE B4 3 223 -1 2 1009 618 216 0 33 chr4 55576666 55576786 -100053334 + B1_Mur3 SINE Alu 21 136 -13 2 1009 188 0 74 0 chr4 55576786 55576813 -100053307 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2 1009 216 0 0 0 chr4 55576828 55576852 -100053268 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1009 556 315 80 36 chr4 55577049 55577299 -100052821 - MER2 DNA MER2_type -1 344 84 2 1009 224 279 38 35 chr4 55577307 55577407 -100052713 + B4 SINE B4 4 108 -57 2 1009 398 20 20 0 chr4 55577449 55577500 -100052620 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1009 213 39 0 0 chr4 55577500 55577525 -100052595 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1009 207 69 0 0 chr4 55577653 55577682 -100052438 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1009 188 79 53 0 chr4 55577684 55577722 -100052398 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 2 1009 406 243 29 19 chr4 55577914 55578019 -100052101 - PB1D10 SINE Alu -3 114 9 2 1009 363 23 0 0 chr4 55578060 55578104 -100052016 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1009 518 293 86 0 chr4 55578110 55578250 -100051870 - RSINE1 SINE B4 -11 154 3 2 1009 225 235 20 0 chr4 55578688 55578739 -100051381 - L1M5 LINE L1 -1463 4683 4632 2 1009 397 195 12 38 chr4 55578787 55578867 -100051253 + B3A SINE B2 15 92 -106 2 1009 244 312 26 0 chr4 55579129 55579206 -100050914 + ID4 SINE ID 1 79 -4 2 1009 268 284 102 0 chr4 55579251 55579339 -100050781 + ID_B1 SINE B4 35 131 -93 2 1009 378 0 0 0 chr4 55579400 55579442 -100050678 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 2 1009 499 284 57 0 chr4 55579471 55579612 -100050508 + B1F2 SINE Alu 1 149 0 2 1009 575 145 134 17 chr4 55579751 55579870 -100050250 + RSINE1 SINE B4 3 135 -30 2 1009 315 0 0 0 chr4 55579888 55579923 -100050197 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 1009 24 0 0 0 chr4 55580001 55580025 -100050095 + AT_rich Low_complexity Low_complexity 1 24 0 2 1009 540 280 0 31 chr4 55581330 55581459 -100048661 - B1F2 SINE Alu -24 125 1 2 1009 182 295 144 23 chr4 55581513 55581645 -100048475 - MIRb SINE MIR -115 153 6 2 1009 480 202 35 96 chr4 55581961 55582076 -100048044 - PB1D10 SINE Alu 0 117 10 2 1009 243 358 41 31 chr4 55581993 55582091 -100048029 - B4 SINE B4 -114 178 80 2 1009 245 151 0 19 chr4 55582099 55582153 -100047967 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 2 1009 433 325 35 0 chr4 55582200 55582314 -100047806 - RSINE1 SINE B4 -44 121 4 2 1009 731 256 80 43 chr4 55582683 55582871 -100047249 - ID_B1 SINE B4 -13 211 17 2 1009 206 336 97 32 chr4 55583164 55583318 -100046802 - MIRc SINE MIR -16 252 89 2 1009 378 226 135 38 chr4 55583492 55583625 -100046495 + B1F SINE Alu 3 148 -1 2 1009 493 276 141 15 chr4 55583633 55583832 -100046288 + ID_B1 SINE B4 1 224 0 2 1009 182 175 48 48 chr4 55584160 55584202 -100045918 + L3 LINE CR1 934 975 -3514 2 1009 213 139 0 0 chr4 55585439 55585482 -100044638 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 2 1009 343 98 0 32 chr4 55586153 55586216 -100043904 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 2 1009 853 247 31 36 chr4 55586217 55586410 -100043710 - ID_B1 SINE B4 -18 206 15 2 1009 445 274 49 0 chr4 55586409 55586511 -100043609 - B1F SINE Alu -10 139 33 2 1009 348 298 115 0 chr4 55586649 55586753 -100043367 + PB1D10 SINE Alu 2 117 0 2 1009 647 238 24 0 chr4 55587346 55587472 -100042648 + B1F SINE Alu 1 129 -20 2 1009 21 0 0 0 chr4 55587477 55587498 -100042622 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 1327 275 48 17 chr4 55588075 55588120 -100042000 - MTE2b LTR MaLR -13 366 328 2 1009 1222 64 12 6 chr4 55588120 55588293 -100041827 + (GGAA)n Simple_repeat Simple_repeat 1 174 0 2 1009 1327 275 48 17 chr4 55588293 55588602 -100041518 - MTE2b LTR MaLR -52 327 3 2 1009 378 0 0 0 chr4 55588668 55588710 -100041410 + (CCA)n Simple_repeat Simple_repeat 2 43 0 2 1009 1638 185 21 0 chr4 55588710 55588996 -100041124 - RMER1A Other Other -506 524 233 2 1009 459 226 35 0 chr4 55589088 55589203 -100040917 + RMER1C Other Other 1224 1342 0 2 1009 422 300 0 0 chr4 55589223 55589323 -100040797 + ID_B1 SINE B4 83 182 -42 2 1009 609 129 26 0 chr4 55589962 55590078 -100040042 + (TCCA)n Simple_repeat Simple_repeat 3 121 0 2 1009 225 320 27 0 chr4 55590091 55590166 -100039954 - ID4 SINE ID -4 79 3 2 1009 715 263 6 31 chr4 55590600 55590761 -100039359 + RSINE1 SINE B4 3 159 -6 2 1009 207 0 0 0 chr4 55590876 55590899 -100039221 + (TTTTTA)n Simple_repeat Simple_repeat 3 25 0 2 1009 246 210 30 198 chr4 55590901 55591002 -100039118 - B4 SINE B4 -206 86 3 2 1009 951 239 34 0 chr4 55591124 55591333 -100038787 - ID_B1 SINE B4 -8 216 1 2 1009 405 0 0 0 chr4 55591380 55591425 -100038695 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1009 780 11 0 0 chr4 55591425 55591513 -100038607 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1009 260 286 81 23 chr4 55591871 55591957 -100038163 + MIRm SINE MIR 184 274 -2 2 1009 22 0 0 0 chr4 55592363 55592385 -100037735 + AT_rich Low_complexity Low_complexity 1 22 0 2 1009 668 267 29 7 chr4 55592395 55592531 -100037589 - ID_B1 SINE B4 -5 219 81 2 1009 434 311 19 69 chr4 55592546 55592597 -100037523 - RSINE1 SINE B4 0 165 126 2 1009 213 39 0 0 chr4 55592597 55592623 -100037497 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1009 434 311 19 69 chr4 55592623 55592730 -100037390 - RSINE1 SINE B4 -40 125 16 2 1009 243 0 0 0 chr4 55592765 55592792 -100037328 + (TTATA)n Simple_repeat Simple_repeat 3 29 0 2 1009 347 230 27 0 chr4 55592792 55592866 -100037254 + MTC LTR MaLR 113 188 -233 2 1009 779 141 49 14 chr4 55593018 55593162 -100036958 - ORR1D1-int LTR MaLR -32 1338 1190 2 1009 1325 187 127 7 chr4 55593154 55593461 -100036659 - ORR1D1 LTR MaLR -27 347 4 2 1009 3557 197 56 6 chr4 55593465 55594144 -100035976 - ORR1D1-int LTR MaLR 0 1370 658 2 1009 2621 176 31 23 chr4 55594184 55594661 -100035459 - ORR1D1-int LTR MaLR -889 481 1 2 1009 659 293 158 3 chr4 55594661 55594983 -100035137 - ORR1D1 LTR MaLR 0 374 3 2 1009 544 292 0 0 chr4 55595118 55595255 -100034865 + B1F SINE Alu 1 137 -12 2 1009 198 91 0 0 chr4 55595266 55595299 -100034821 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2 1009 371 299 27 88 chr4 55595320 55595467 -100034653 + RSINE1 SINE B4 9 146 -19 2 1009 1562 212 95 31 chr4 55595471 55595861 -100034259 + MTD LTR MaLR 5 419 0 2 1009 822 56 0 0 chr4 55595868 55595976 -100034144 + (CTA)n Simple_repeat Simple_repeat 3 110 0 2 1009 246 322 103 9 chr4 55596708 55596824 -100033296 - MER96 DNA hAT -48 127 1 2 1009 294 252 126 36 chr4 55597052 55597163 -100032957 + ID_B1 SINE B4 102 222 -2 2 1009 232 167 69 69 chr4 55597234 55597292 -100032828 + ID_B1 SINE B4 165 222 -2 2 1009 630 168 0 0 chr4 55597554 55597691 -100032429 + (CA)n Simple_repeat Simple_repeat 2 138 0 2 1009 498 46 0 0 chr4 55597743 55597808 -100032312 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1009 2556 72 12 0 chr4 55597959 55598280 -100031840 - ORR1A2 LTR MaLR -2 325 1 2 1009 267 327 40 98 chr4 55598417 55598590 -100031530 - MER5A1 DNA MER1_type -1 165 3 2 1009 825 269 100 15 chr4 55598648 55598909 -100031211 - B4 SINE B4 -8 284 2 2 1009 484 322 84 49 chr4 55599354 55599579 -100030541 - Charlie22a DNA MER1_type -258 233 1 2 1009 753 273 57 9 chr4 55599666 55599877 -100030243 + ID_B1 SINE B4 1 221 -3 2 1009 715 254 62 66 chr4 55600004 55600215 -100029905 - ID_B1 SINE B4 -10 214 5 2 1009 603 242 83 50 chr4 55600460 55600738 -100029382 + L1M5 LINE L1 5537 5823 -301 2 1009 468 318 45 8 chr4 55600838 55600971 -100029149 + RSINE1 SINE B4 3 140 -25 2 1009 229 219 0 0 chr4 55601163 55601204 -100028916 - ID_B1 SINE B4 -8 216 176 2 1009 686 204 0 13 chr4 55601210 55601369 -100028751 + CT-rich Low_complexity Low_complexity 2 158 0 2 1009 209 33 0 32 chr4 55601369 55601400 -100028720 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2 1009 799 172 20 33 chr4 55601410 55601560 -100028560 - B1_Mur3 SINE Alu 0 149 2 2 1009 1951 49 12 0 chr4 55601609 55601852 -100028268 - L1Md_F2 LINE L1 0 6582 6337 2 1009 234 320 200 0 chr4 55602416 55602541 -100027579 - B4A SINE B4 -50 242 93 2 1009 335 267 84 56 chr4 55602437 55602544 -100027576 - PB1D9 SINE Alu -6 114 5 2 1009 794 293 10 14 chr4 55602589 55602797 -100027323 + ID_B1 SINE B4 18 224 0 2 1009 254 309 82 35 chr4 55602655 55602826 -100027294 - YREP_Mm Unknown Unknown -1501 311 133 3 1009 584 263 9 0 chr4 55602981 55603095 -100027025 + B1F1 SINE Alu 27 141 -8 3 1009 1335 48 0 0 chr4 55603200 55603367 -100026753 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 3 1009 307 83 33 0 chr4 55603367 55603426 -100026694 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1009 180 0 0 0 chr4 55603648 55603668 -100026452 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1009 421 281 58 15 chr4 55603668 55603805 -100026315 - B1F1 SINE Alu 0 149 7 3 1009 969 34 0 0 chr4 55603875 55603992 -100026128 + (TCCC)n Simple_repeat Simple_repeat 4 120 0 3 1009 208 216 0 0 chr4 55604066 55604103 -100026017 + polypyrimidine Low_complexity Low_complexity 3 39 0 3 1009 553 245 213 4 chr4 55604192 55604422 -100025698 - B4A SINE B4 -14 278 1 3 1009 1088 193 34 245 chr4 55604516 55605100 -100025020 + RMER6B LTR ERVK 1 461 0 3 1009 240 35 0 0 chr4 55605894 55605923 -100024197 + (TTCG)n Simple_repeat Simple_repeat 2 30 0 3 1009 321 135 0 0 chr4 55605930 55605982 -100024138 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 3 1009 625 275 95 6 chr4 55606238 55606417 -100023703 + ID_B1 SINE B4 1 195 -29 3 1009 334 272 25 0 chr4 55606406 55606487 -100023633 - PB1D7 SINE Alu -31 89 7 3 1009 902 96 7 0 chr4 55606584 55606719 -100023401 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 3 1009 339 217 43 21 chr4 55606950 55607044 -100023076 - PB1D10 SINE Alu 0 117 22 3 1009 434 206 133 16 chr4 55607120 55607248 -100022872 + B1F SINE Alu 3 145 -4 3 1009 578 189 0 0 chr4 55607253 55607348 -100022772 + RSINE1 SINE B4 1 95 -70 3 1009 221 303 78 83 chr4 55607263 55607443 -100022677 + B2_Mm2 SINE B2 10 188 -7 3 1009 1397 247 84 3 chr4 55607549 55607870 -100022250 + MTE2b LTR MaLR 18 364 -15 3 1009 353 233 8 142 chr4 55608851 55608971 -100021149 - ID_B1 SINE B4 -1 223 120 3 1009 465 236 0 0 chr4 55609347 55609495 -100020625 + (CA)n Simple_repeat Simple_repeat 2 149 0 3 1009 266 149 13 63 chr4 55609921 55610000 -100020120 - L1ME4a LINE L1 0 6124 6050 3 1009 301 301 42 0 chr4 55610053 55610170 -100019950 - ID4 SINE ID -21 131 7 3 1009 843 161 206 6 chr4 55610206 55610381 -100019739 - B3 SINE B2 -6 210 1 3 1009 213 260 13 40 chr4 55610407 55610483 -100019637 - B4 SINE B4 -203 89 16 3 1009 389 197 0 0 chr4 55610415 55610486 -100019634 - ID4 SINE ID 0 83 13 3 1009 392 319 35 0 chr4 55610913 55611026 -100019094 - ID_B1 SINE B4 0 224 108 3 1009 271 317 67 9 chr4 55611228 55611333 -100018787 + PB1D9 SINE Alu 1 111 -9 3 1009 495 256 135 5 chr4 55611378 55611563 -100018557 - B3 SINE B2 -6 210 2 3 1009 311 375 81 6 chr4 55611565 55611611 -100018509 + B4 SINE B4 35 181 -111 3 1009 644 220 0 0 chr4 55611611 55611720 -100018400 + B1_Mur3 SINE Alu 1 109 -40 3 1009 299 202 124 0 chr4 55612181 55612270 -100017850 - L1M5 LINE L1 -2089 4057 3958 3 1009 811 250 31 5 chr4 55612374 55612567 -100017553 + B3A SINE B2 1 198 0 3 1009 862 161 207 11 chr4 55612654 55612842 -100017278 + URR1A DNA MER1_type 2 226 0 3 1009 213 121 0 0 chr4 55612906 55612939 -100017181 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1009 240 35 0 0 chr4 55613051 55613080 -100017040 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1009 424 309 150 31 chr4 55613082 55613342 -100016778 - B4A SINE B4 0 292 2 3 1009 21 0 0 0 chr4 55613384 55613405 -100016715 + AT_rich Low_complexity Low_complexity 1 21 0 3 1009 182 184 39 13 chr4 55613464 55613541 -100016579 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1009 244 324 15 0 chr4 55613678 55613746 -100016374 - ID4_ SINE ID -13 70 2 3 1009 240 224 33 33 chr4 55613916 55613976 -100016144 - PB1D10 SINE Alu -16 101 42 3 1009 560 359 73 18 chr4 55614035 55614526 -100015594 - L1M5 LINE L1 -2887 3259 2742 3 1009 709 276 85 0 chr4 55614569 55614768 -100015352 - ID_B1 SINE B4 -1 223 8 3 1009 228 143 0 0 chr4 55615411 55615453 -100014667 + (TTCTC)n Simple_repeat Simple_repeat 3 44 0 3 1009 233 310 14 0 chr4 55615492 55615563 -100014557 - ID4_ SINE ID -9 74 3 3 1009 447 281 20 33 chr4 55615563 55615714 -100014406 - B1F1 SINE Alu 0 149 1 3 1009 647 285 11 28 chr4 55615745 55615922 -100014198 - ID_B1 SINE B4 -48 176 3 3 1009 183 219 132 40 chr4 55615940 55616016 -100014104 + MIR SINE MIR 59 141 -67 3 1009 417 303 14 33 chr4 55616438 55616610 -100013510 - MIRb SINE MIR -56 212 42 3 1009 222 259 74 0 chr4 55616783 55616837 -100013283 - L2c LINE L2 0 3387 3330 3 1009 186 248 126 50 chr4 55617584 55617703 -100012417 - MIRc SINE MIR -102 166 39 3 1009 201 74 0 0 chr4 55618234 55618261 -100011859 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1009 627 39 0 0 chr4 55619127 55619205 -100010915 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1009 247 228 134 52 chr4 55620185 55620282 -100009838 + MIRb SINE MIR 121 225 -43 3 1009 775 297 13 52 chr4 55620910 55621141 -100008979 - ID_B1 SINE B4 -1 223 2 3 1009 243 0 0 0 chr4 55621148 55621175 -100008945 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1009 268 312 52 0 chr4 55621191 55621268 -100008852 - PB1D7 SINE Alu 0 120 40 3 1009 295 274 52 82 chr4 55622745 55622880 -100007240 + MIRb SINE MIR 93 223 -45 3 1009 373 271 109 27 chr4 55622881 55622991 -100007129 + PB1 SINE Alu 2 120 -7 3 1009 548 208 10 0 chr4 55623334 55623435 -100006685 + B3 SINE B2 115 216 0 3 1009 274 191 62 99 chr4 55623712 55623725 -100006395 + PB1D10 SINE Alu 20 114 -8 3 1009 536 222 20 0 chr4 55623725 55623824 -100006296 + ID_B1 SINE B4 115 215 -9 3 1009 225 288 0 63 chr4 55623773 55623836 -100006284 - MLT1F2 LTR MaLR -168 392 334 3 1009 433 67 47 28 chr4 55623836 55623943 -100006177 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 1009 269 252 148 9 chr4 55624912 55625020 -100005100 - L1MB7 LINE L1 -129 6055 5933 3 1009 414 228 35 12 chr4 55625079 55625252 -100004868 + CT-rich Low_complexity Low_complexity 2 178 0 3 1009 542 230 26 9 chr4 55625359 55625473 -100004647 - B1F SINE Alu -8 141 26 3 1009 426 315 54 73 chr4 55625516 55625806 -100004314 - B4A SINE B4 0 292 27 3 1009 257 0 0 29 chr4 55625876 55625910 -100004210 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1009 1580 138 255 6 chr4 55626006 55626343 -100003777 + MTC LTR MaLR 1 421 0 3 1009 554 286 0 22 chr4 55626979 55627115 -100003005 - RSINE1 SINE B4 -29 136 4 3 1009 613 187 187 0 chr4 55627117 55627240 -100002880 - ID_B1 SINE B4 -67 157 12 3 1009 553 263 15 22 chr4 55627326 55627462 -100002658 - ID_B1 SINE B4 -3 221 87 3 1009 470 328 52 26 chr4 55627822 55628016 -100002104 + MLT1M LTR MaLR 93 291 -381 3 1009 513 0 0 0 chr4 55628124 55628181 -100001939 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1009 610 243 185 16 chr4 55628377 55628561 -100001559 + ID_B1 SINE B4 2 216 -8 3 1009 915 157 14 0 chr4 55628626 55628773 -100001347 + B1_Mur4 SINE Alu 1 149 -1 3 1009 561 15 0 0 chr4 55629173 55629239 -100000881 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1009 396 0 0 0 chr4 55629239 55629282 -100000838 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1009 306 222 54 54 chr4 55629490 55629620 -100000500 + MIRm SINE MIR 57 180 -28 3 1009 223 138 45 11 chr4 55629662 55629750 -100000370 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 1009 234 193 0 0 chr4 55629750 55629807 -100000313 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1009 1011 273 20 8 chr4 55629851 55630102 -100000018 - B4 SINE B4 0 292 39 3 1009 604 210 264 0 chr4 55630169 55630336 -99999784 - ID_B1 SINE B4 -5 219 9 3 1009 284 336 68 15 chr4 55630358 55630491 -99999629 - B1F SINE Alu -9 140 1 3 1009 380 294 135 29 chr4 55630785 55630985 -99999135 - MLT1A LTR MaLR -11 363 142 3 1009 776 302 44 26 chr4 55630985 55631257 -99998863 - MLT1A0 LTR MaLR -2 363 87 3 1009 21 0 0 0 chr4 55631779 55631800 -99998320 + AT_rich Low_complexity Low_complexity 1 21 0 3 1009 958 233 24 14 chr4 55632120 55632333 -99997787 + ID_B1 SINE B4 2 216 -8 3 1009 620 284 50 64 chr4 55632421 55632639 -99997481 - B3A SINE B2 0 216 2 3 1009 447 257 50 0 chr4 55632758 55632859 -99997261 - PB1D10 SINE Alu -11 106 1 3 1009 26 0 0 0 chr4 55633340 55633366 -99996754 + AT_rich Low_complexity Low_complexity 1 26 0 3 1009 205 175 25 0 chr4 55633423 55633463 -99996657 + CT-rich Low_complexity Low_complexity 4 44 0 3 1009 527 292 53 15 chr4 55633463 55633582 -99996538 - ID_B1 SINE B4 -18 206 82 3 1009 505 202 34 34 chr4 55633582 55633700 -99996420 - PB1D7 SINE Alu -2 118 1 3 1009 527 292 53 15 chr4 55633700 55633712 -99996408 - ID SINE ID -143 81 70 3 1009 194 312 62 0 chr4 55633784 55633848 -99996272 - MIRm SINE MIR -1 275 208 3 1009 691 222 0 8 chr4 55633930 55634057 -99996063 + B3 SINE B2 2 127 -89 3 1009 335 26 0 0 chr4 55634057 55634095 -99996025 + MERVK26-int LTR ERVK 4540 4577 -2342 3 1009 316 328 56 102 chr4 55635051 55635374 -99994746 + L2c LINE L2 3080 3387 0 3 1009 230 0 33 0 chr4 55635828 55635858 -99994262 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1009 23 33 0 0 chr4 55636264 55636294 -99993826 + AT_rich Low_complexity Low_complexity 1 30 0 4 1009 249 303 0 0 chr4 55636594 55636660 -99993460 - ID4_ SINE ID -16 67 2 4 1009 210 37 0 0 chr4 55636738 55636765 -99993355 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1009 461 217 283 0 chr4 55636920 55637040 -99993080 - RSINE1 SINE B4 -1 164 11 4 1009 249 276 86 62 chr4 55637066 55637147 -99992973 - ID4_ SINE ID 0 83 1 4 1009 231 114 0 0 chr4 55637220 55637255 -99992865 + (ATG)n Simple_repeat Simple_repeat 3 37 0 4 1009 1028 87 0 7 chr4 55638134 55638284 -99991836 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 4 1009 504 174 148 55 chr4 55638458 55638586 -99991534 - B1F1 SINE Alu -9 140 1 4 1009 504 0 0 0 chr4 55638619 55638675 -99991445 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1009 259 298 91 74 chr4 55638869 55639076 -99991044 + MIRc SINE MIR 6 219 -49 4 1009 978 323 33 13 chr4 55639365 55639669 -99990451 - MTE2b LTR MaLR -65 314 5 4 1009 197 65 32 0 chr4 55639942 55639973 -99990147 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1009 435 52 0 0 chr4 55640662 55640720 -99989400 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1009 474 165 233 0 chr4 55640922 55641025 -99989095 - B1F2 SINE Alu -7 142 16 4 1009 266 278 42 100 chr4 55640951 55641071 -99989049 - B4 SINE B4 -123 169 57 4 1009 181 230 13 13 chr4 55641443 55641518 -99988602 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 4 1009 675 202 42 7 chr4 55641564 55641729 -99988391 - B3 SINE B2 -19 174 2 4 1009 346 298 9 9 chr4 55641730 55641845 -99988275 + (TCCA)n Simple_repeat Simple_repeat 4 118 0 4 1009 234 237 29 61 chr4 55641887 55641987 -99988133 + MER5A DNA MER1_type 7 97 -92 4 1009 391 279 40 32 chr4 55642738 55642864 -99987256 + Charlie4z DNA MER1_type 17 143 -24 4 1009 512 242 24 71 chr4 55643043 55643212 -99986908 - MER5A1 DNA MER1_type 0 166 6 4 1009 183 42 0 0 chr4 55643661 55643685 -99986435 + (CAA)n Simple_repeat Simple_repeat 3 26 0 4 1009 274 339 61 18 chr4 55643787 55643799 -99986321 - MT2A LTR ERVL -409 124 6 4 1009 626 176 20 0 chr4 55643799 55643901 -99986219 - MTEa LTR MaLR -270 109 6 4 1009 259 233 16 16 chr4 55644129 55644190 -99985930 + MIRc SINE MIR 88 148 -120 4 1009 357 250 52 69 chr4 55644234 55644350 -99985770 + MER5A DNA MER1_type 72 185 -4 4 1009 387 0 0 0 chr4 55644431 55644474 -99985646 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1009 1241 54 0 0 chr4 55644540 55644688 -99985432 - B1_Mus1 SINE Alu 0 148 1 4 1009 981 219 8 8 chr4 55644773 55645013 -99985107 - L1MB7 LINE L1 0 6184 5945 4 1009 31 0 0 0 chr4 55645015 55645046 -99985074 + AT_rich Low_complexity Low_complexity 1 31 0 4 1009 1197 171 32 14 chr4 55645467 55645687 -99984433 + URR1B DNA MER1_type 1 224 -1 4 1009 2190 113 6 9 chr4 55645777 55646106 -99984014 - ORR1A4 LTR MaLR -1 328 1 4 1009 1214 262 96 3 chr4 55646568 55646913 -99983207 + MTEa LTR MaLR 2 378 -1 4 1009 1276 254 25 0 chr4 55647265 55647548 -99982572 + B4 SINE B4 1 290 -2 4 1009 408 20 0 0 chr4 55647598 55647647 -99982473 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1009 216 0 0 0 chr4 55648225 55648249 -99981871 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 4 1009 981 229 24 0 chr4 55648530 55648735 -99981385 + ID_B1 SINE B4 3 212 -12 4 1009 831 144 0 0 chr4 55648878 55649017 -99981103 + (TCCC)n Simple_repeat Simple_repeat 3 141 0 4 1009 738 0 0 0 chr4 55649017 55649099 -99981021 + (TTTTC)n Simple_repeat Simple_repeat 3 84 0 4 1009 226 229 0 20 chr4 55649645 55649694 -99980426 + L2b LINE L2 3328 3375 0 4 1009 775 292 115 19 chr4 55650274 55650588 -99979532 - MLT1J LTR MaLR -109 403 60 4 1009 475 216 0 10 chr4 55650707 55650805 -99979315 - PB1D10 SINE Alu 0 117 21 4 1009 259 347 0 0 chr4 55650840 55650915 -99979205 - ID4_ SINE ID -8 75 1 4 1009 607 254 66 0 chr4 55651081 55651203 -99978917 + RSINE1 SINE B4 3 132 -33 4 1009 746 94 0 8 chr4 55651225 55651343 -99978777 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1009 180 288 81 70 chr4 55651939 55652025 -99978095 - MIR SINE MIR -56 206 120 4 1009 258 39 38 38 chr4 55652081 55652134 -99977986 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1009 307 324 167 14 chr4 55653141 55653279 -99976841 - HAL1-3A_ME LINE L1 -416 2442 2284 4 1009 368 312 30 60 chr4 55653337 55653504 -99976616 - RSINE1 SINE B4 -2 163 2 4 1009 400 298 48 0 chr4 55653505 55653609 -99976511 - PB1D7 SINE Alu 0 120 12 4 1009 522 316 106 5 chr4 55653632 55653820 -99976300 - MER58A DNA MER1_type -17 207 1 4 1009 232 294 11 66 chr4 55653894 55653985 -99976135 + MIR SINE MIR 108 193 -69 4 1009 269 319 0 14 chr4 55654040 55654113 -99976007 - L2b LINE L2 -10 3365 3294 4 1009 383 243 35 18 chr4 55654703 55654816 -99975304 + MIR SINE MIR 35 149 -113 4 1009 539 285 28 35 chr4 55654831 55654973 -99975147 + ID_B1 SINE B4 83 223 -1 4 1009 200 111 0 27 chr4 55655083 55655120 -99975000 + (TCC)n Simple_repeat Simple_repeat 3 38 0 4 1009 360 0 0 0 chr4 55655599 55655639 -99974481 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1009 304 335 14 82 chr4 55656186 55656394 -99973726 + L2b LINE L2 2159 2352 -1067 4 1009 343 254 15 0 chr4 55656601 55656668 -99973452 + MER81 DNA AcHobo 47 114 0 4 1009 212 302 119 64 chr4 55656728 55656947 -99973173 + L2b LINE L2 2990 3220 -155 4 1009 627 270 22 0 chr4 55657235 55657372 -99972748 - ID_B1 SINE B4 -3 221 82 4 1009 274 269 69 103 chr4 55657372 55657438 -99972682 + YREP_Mm Unknown Unknown 182 377 -1435 4 1009 464 137 39 0 chr4 55657702 55657804 -99972316 + GA-rich Low_complexity Low_complexity 3 108 0 4 1009 226 326 32 11 chr4 55657859 55657952 -99972168 + MIR SINE MIR 28 122 -86 4 1009 406 309 38 57 chr4 55657995 55658153 -99971967 - MER5B DNA MER1_type -23 155 1 4 1009 233 75 25 0 chr4 55658947 55658987 -99971133 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1009 264 214 44 77 chr4 55659426 55659517 -99970603 + MIR SINE MIR 68 155 -107 4 1009 497 180 17 23 chr4 55659689 55659865 -99970255 + CT-rich Low_complexity Low_complexity 1 175 0 4 1009 183 269 72 29 chr4 55660602 55660671 -99969449 - MIR SINE MIR -116 92 21 4 1009 24 0 0 0 chr4 55661134 55661158 -99968962 + AT_rich Low_complexity Low_complexity 1 24 0 4 1009 253 292 0 0 chr4 55661726 55661791 -99968329 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 4 1009 308 295 22 11 chr4 55662462 55662551 -99967569 + MIR SINE MIR 3 92 -170 4 1009 276 30 0 0 chr4 55662899 55662932 -99967188 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 4 1009 191 233 0 23 chr4 55663244 55663288 -99966832 + MIR SINE MIR 106 148 -60 4 1009 231 36 0 0 chr4 55663503 55663531 -99966589 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 4 1009 233 310 14 0 chr4 55664613 55664684 -99965436 + C-rich Low_complexity Low_complexity 75 146 0 4 1009 194 324 101 63 chr4 55665919 55666077 -99964043 + MIRb SINE MIR 55 218 -50 4 1009 287 229 14 28 chr4 55666181 55666253 -99963867 + C-rich Low_complexity Low_complexity 5 75 0 4 1009 246 254 14 14 chr4 55666253 55666325 -99963795 - MIRc SINE MIR -120 148 77 4 1009 562 274 6 25 chr4 55667145 55667302 -99962818 - B3A SINE B2 -18 180 27 4 1009 977 124 0 6 chr4 55667579 55667741 -99962379 + (TCCC)n Simple_repeat Simple_repeat 1 161 0 4 1009 241 330 52 60 chr4 55667910 55668142 -99961978 + Tigger5 DNA MER2_type 2176 2405 -1 4 1009 548 280 7 7 chr4 55668223 55668367 -99961753 - B1F2 SINE Alu -1 148 5 4 1009 252 308 11 32 chr4 55668817 55668911 -99961209 + CT-rich Low_complexity Low_complexity 3 94 0 4 1009 237 312 117 10 chr4 55669319 55669415 -99960705 + MIR SINE MIR 50 153 -115 4 1009 203 226 57 0 chr4 55669416 55669469 -99960651 - MIRc SINE MIR -129 139 84 4 1009 189 0 0 0 chr4 55669548 55669569 -99960551 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1009 273 233 0 62 chr4 55670030 55670114 -99960006 + CT-rich Low_complexity Low_complexity 13 91 0 4 1009 612 228 58 146 chr4 55670114 55670340 -99959780 - ID_B1 SINE B4 -16 208 3 4 1009 273 233 0 62 chr4 55670340 55670351 -99959769 + polypyrimidine Low_complexity Low_complexity 2 12 0 4 1009 498 33 0 0 chr4 55670911 55670971 -99959149 + (CATA)n Simple_repeat Simple_repeat 4 63 0 4 1009 263 271 122 20 chr4 55671054 55671152 -99958968 - PB1D7 SINE Alu -12 108 1 4 1009 204 188 0 0 chr4 55672037 55672069 -99958051 + (CGG)n Simple_repeat Simple_repeat 3 34 0 4 1009 190 288 27 0 chr4 55672302 55672375 -99957745 + MIR3 SINE MIR 118 192 -16 4 1009 198 0 0 0 chr4 55672752 55672774 -99957346 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1009 221 291 48 60 chr4 55672775 55672859 -99957261 - B1F1 SINE Alu -66 83 1 4 1009 577 270 0 0 chr4 55672859 55672940 -99957180 - ID SINE ID -143 81 1 4 1009 293 294 116 0 chr4 55673053 55673199 -99956921 - MER63A DNA AcHobo -47 163 1 4 1009 2075 122 51 6 chr4 55673232 55673545 -99956575 + ORR1A2 LTR MaLR 1 327 0 4 1009 180 301 9 88 chr4 55674590 55674703 -99955417 - MIRb SINE MIR -34 234 131 4 1009 414 318 13 13 chr4 55675623 55675773 -99954347 + CT-rich Low_complexity Low_complexity 5 154 0 4 1009 1169 82 0 0 chr4 55675957 55676104 -99954016 - B1_Mus1 SINE Alu 0 148 2 4 1009 354 231 113 19 chr4 55676330 55676436 -99953684 - PB1D10 SINE Alu -1 116 1 4 1009 611 251 122 4 chr4 55677283 55677492 -99952628 + ID_B1 SINE B4 12 246 -46 5 1009 291 54 0 0 chr4 55678121 55678158 -99951962 + (TCC)n Simple_repeat Simple_repeat 3 39 0 5 1009 216 111 0 0 chr4 55678756 55678792 -99951328 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1009 247 216 0 0 chr4 55678929 55678977 -99951143 + B1F SINE Alu 62 138 -11 5 1009 189 0 0 0 chr4 55679341 55679362 -99950758 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1009 254 213 0 0 chr4 55679537 55679584 -99950536 - B3A SINE B2 -128 70 24 5 1009 212 54 0 51 chr4 55679632 55679671 -99950449 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 5 1009 1136 75 0 26 chr4 55679671 55679822 -99950298 - B1_Mm SINE Alu 0 147 1 5 1009 227 376 34 11 chr4 55679841 55680016 -99950104 + L3 LINE CR1 4222 4400 -89 5 1009 450 316 7 29 chr4 55680087 55680224 -99949896 - ID_B1 SINE B4 -3 221 88 5 1009 284 350 10 10 chr4 55680634 55680735 -99949385 - PB1D10 SINE Alu -7 110 10 5 1009 186 43 0 0 chr4 55680999 55681022 -99949098 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 5 1009 300 70 0 0 chr4 55681022 55681065 -99949055 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 5 1009 273 324 82 7 chr4 55681378 55681524 -99948596 + MIRb SINE MIR 52 208 -60 5 1009 581 252 14 0 chr4 55684396 55684543 -99945577 - B1F SINE Alu 0 149 1 5 1009 258 106 0 0 chr4 55685741 55685788 -99944332 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1009 466 190 5 27 chr4 55686105 55686289 -99943831 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1009 225 0 0 0 chr4 55686289 55686314 -99943806 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1009 282 116 0 0 chr4 55686399 55686442 -99943678 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1009 231 36 0 0 chr4 55687280 55687308 -99942812 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 1009 1135 219 90 59 chr4 55687337 55687658 -99942462 - MT2B LTR ERVL 0 601 271 5 1009 216 111 31 16 chr4 55687721 55687785 -99942335 + (CAA)n Simple_repeat Simple_repeat 2 66 0 5 1009 338 244 36 0 chr4 55687835 55687943 -99942177 - MT2B LTR ERVL -371 122 1 5 1009 241 151 17 86 chr4 55688203 55688261 -99941859 + B1_Mur2 SINE Alu 96 149 0 5 1009 1220 48 7 0 chr4 55688656 55688802 -99941318 + B1_Mm SINE Alu 1 147 0 5 1009 201 180 0 0 chr4 55688804 55688854 -99941266 + A-rich Low_complexity Low_complexity 1 50 0 5 1009 234 253 83 12 chr4 55689471 55689555 -99940565 - Lx8 LINE L1 -2 7471 7382 5 1009 1056 127 12 6 chr4 55689898 55690064 -99940056 + Lx3C LINE L1 6716 6882 -94 5 1009 180 0 0 0 chr4 55691840 55691860 -99938260 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1009 290 291 0 35 chr4 55692610 55692724 -99937396 + CT-rich Low_complexity Low_complexity 2 111 0 5 1009 351 291 222 0 chr4 55692727 55692893 -99937227 - ID_B1 SINE B4 -21 203 1 5 1009 227 91 0 0 chr4 55694253 55694286 -99935834 + L1M4b LINE L1 2180 2212 -5122 5 1009 503 179 112 9 chr4 55694998 55695105 -99935015 - B1_Mur1 SINE Alu -13 136 19 5 1009 228 278 110 25 chr4 55695010 55695128 -99934992 - MT2B LTR ERVL -320 281 154 5 1009 323 271 39 139 chr4 55695393 55695573 -99934547 + B4 SINE B4 12 173 -119 5 1009 194 105 0 26 chr4 55695588 55695627 -99934493 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1009 240 338 12 24 chr4 55695652 55695734 -99934386 + RSINE1 SINE B4 83 163 -2 5 1009 510 17 0 0 chr4 55695743 55695802 -99934318 + (TAA)n Simple_repeat Simple_repeat 2 60 0 5 1009 730 114 9 0 chr4 55696446 55696560 -99933560 - URR1B DNA MER1_type -1 224 110 5 1009 316 281 209 26 chr4 55696561 55696795 -99933325 - B4A SINE B4 -14 278 2 5 1009 322 333 75 0 chr4 55697055 55697175 -99932945 - ID_B1 SINE B4 -1 223 95 5 1009 316 288 210 12 chr4 55697597 55697759 -99932361 + ORR1E LTR MaLR 1 194 -165 5 1009 240 295 179 0 chr4 55697819 55697914 -99932206 + ORR1E LTR MaLR 251 362 -17 5 1009 289 295 32 0 chr4 55698422 55698517 -99931603 + ORR1E LTR MaLR 50 147 -212 5 1009 433 231 58 0 chr4 55699656 55699760 -99930360 - B1_Mus2 SINE Alu -36 111 2 5 1009 818 194 29 0 chr4 55700441 55700611 -99929509 + MER58A DNA MER1_type 46 220 -4 5 1009 339 25 0 0 chr4 55701345 55701385 -99928735 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1009 715 173 0 12 chr4 55701385 55701555 -99928565 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1009 416 317 39 0 chr4 55701579 55701683 -99928437 - B1_Mur1 SINE Alu -21 128 21 5 1009 1269 61 0 16 chr4 55701683 55701866 -99928254 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1009 564 15 0 0 chr4 55701866 55701931 -99928189 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 5 1009 402 296 78 0 chr4 55701931 55702046 -99928074 - ID_B1 SINE B4 -18 206 83 5 1009 537 16 0 0 chr4 55702286 55702348 -99927772 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1009 1333 143 37 5 chr4 55703096 55703314 -99926806 - URR1B DNA MER1_type 0 225 1 5 1009 258 269 125 0 chr4 55703498 55703602 -99926518 + MIR SINE MIR 119 235 -27 5 1009 1235 48 0 0 chr4 55704306 55704452 -99925668 + B1_Mm SINE Alu 2 147 0 5 1009 234 91 0 0 chr4 55704452 55704485 -99925635 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1009 255 340 80 42 chr4 55704606 55704818 -99925302 + MIRb SINE MIR 18 237 -31 5 1009 268 330 82 0 chr4 55704945 55705042 -99925078 - Cheshire DNA MER1_type -2147 273 169 5 1010 677 295 50 22 chr4 55705758 55706073 -99924047 + Lx8 LINE L1 5506 5859 -1614 5 1010 2476 150 35 35 chr4 55706986 55707442 -99922678 - Lx4B LINE L1 0 7058 6603 5 1010 543 225 15 58 chr4 55707682 55707819 -99922301 - RSINE1 SINE B4 -33 132 2 5 1010 257 212 29 29 chr4 55708521 55708589 -99921531 + CT-rich Low_complexity Low_complexity 3 70 0 5 1010 489 97 0 0 chr4 55708597 55708669 -99921451 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 5 1010 892 212 81 5 chr4 55708686 55708871 -99921249 - ID_B1 SINE B4 -23 201 3 5 1010 392 379 28 6 chr4 55710554 55710732 -99919388 - MIRb SINE MIR -34 234 53 5 1010 419 262 135 0 chr4 55710975 55711101 -99919019 + B1F SINE Alu 1 143 -6 5 1010 786 197 175 0 chr4 55711110 55711293 -99918827 + B3 SINE B2 2 216 0 5 1010 727 322 111 11 chr4 55711442 55711910 -99918210 - L1MC4 LINE L1 -206 7836 7322 5 1010 1105 239 94 14 chr4 55711988 55712276 -99917844 - L1MC4 LINE L1 -967 7075 6765 5 1010 325 236 0 0 chr4 55712277 55712349 -99917771 + ID_B1 SINE B4 86 157 -67 5 1010 317 295 67 0 chr4 55712349 55712382 -99917738 + PB1D10 SINE Alu 5 116 -1 5 1010 251 291 38 0 chr4 55712386 55712465 -99917655 - L1MC4 LINE L1 -1132 6750 6669 5 1010 357 188 55 24 chr4 55712510 55712674 -99917446 + (TATAA)n Simple_repeat Simple_repeat 2 170 0 5 1010 1094 287 23 47 chr4 55713258 55713645 -99916475 - MTE2b LTR MaLR -1 378 1 5 1010 348 24 0 0 chr4 55713645 55713686 -99916434 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1010 441 198 0 0 chr4 55713702 55713793 -99916327 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1010 299 338 70 39 chr4 55713928 55714214 -99915906 - Lx8 LINE L1 -1 7472 7178 5 1010 570 141 91 0 chr4 55714780 55714879 -99915241 + IAPEY_LTR LTR ERVK 51 158 -227 5 1010 989 115 121 0 chr4 55714877 55715051 -99915069 + IAPEY3_LTR LTR ERVK 133 327 -5 5 1010 407 202 0 10 chr4 55715539 55715639 -99914481 + CT-rich Low_complexity Low_complexity 3 101 0 5 1010 958 248 5 5 chr4 55715717 55715924 -99914196 - B3 SINE B2 0 216 10 5 1010 216 0 0 0 chr4 55716009 55716033 -99914087 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1010 182 239 0 0 chr4 55716454 55716500 -99913620 - L2a LINE L2 -8 3418 3373 5 1010 265 284 189 0 chr4 55716781 55716908 -99913212 - MIRb SINE MIR -99 169 19 5 1010 517 88 44 0 chr4 55717416 55717507 -99912613 + (CATA)n Simple_repeat Simple_repeat 3 97 0 5 1010 213 301 117 0 chr4 55717632 55717735 -99912385 - MIR SINE MIR -117 145 31 5 1010 260 232 14 14 chr4 55719100 55719170 -99910950 + MIRb SINE MIR 122 191 -77 5 1010 929 9 0 9 chr4 55719558 55719669 -99910451 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 5 1010 203 88 29 0 chr4 55719669 55719703 -99910417 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1010 281 353 20 0 chr4 55719720 55719822 -99910298 - ID_B1 SINE B4 -16 208 105 5 1010 204 40 0 0 chr4 55721234 55721259 -99908861 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 1010 302 289 164 0 chr4 55721266 55721370 -99908750 - B1F1 SINE Alu -17 132 12 5 1010 457 374 91 27 chr4 55721742 55722072 -99908048 - ORR1E LTR MaLR -8 351 1 5 1010 271 233 54 14 chr4 55723007 55723081 -99907039 + ID_B1 SINE B4 78 154 -70 5 1010 411 262 10 10 chr4 55723021 55723125 -99906995 + PB1D10 SINE Alu 14 117 0 5 1010 216 194 0 0 chr4 55724564 55724600 -99905520 - MIR SINE MIR -165 97 62 5 1010 242 301 138 26 chr4 55725362 55725478 -99904642 - MIRm SINE MIR -139 137 9 5 1010 320 128 38 13 chr4 55725902 55725981 -99904139 + CT-rich Low_complexity Low_complexity 1 81 0 5 1010 198 0 0 0 chr4 55726250 55726272 -99903848 + (CAA)n Simple_repeat Simple_repeat 2 23 0 5 1010 579 271 137 47 chr4 55726444 55726700 -99903420 + B4A SINE B4 4 282 -10 5 1010 219 318 109 36 chr4 55726780 55726917 -99903203 - MIRb SINE MIR -2 260 114 5 1010 515 265 85 30 chr4 55726993 55727153 -99902967 + MTD LTR MaLR 107 273 -148 5 1010 479 331 28 0 chr4 55727631 55727776 -99902344 - B1F2 SINE Alu 0 149 1 5 1010 235 304 65 29 chr4 55727795 55727934 -99902186 + MIRb SINE MIR 71 214 -48 6 1010 246 235 0 0 chr4 55728544 55728646 -99901474 + (TG)n Simple_repeat Simple_repeat 1 102 0 6 1010 330 320 94 18 chr4 55728775 55728998 -99901122 - MIR SINE MIR 0 262 23 6 1010 21 0 0 0 chr4 55729710 55729731 -99900389 + AT_rich Low_complexity Low_complexity 1 21 0 6 1010 343 296 127 8 chr4 55729748 55729874 -99900246 - ID_B1 SINE B4 -3 221 81 6 1010 1039 267 5 0 chr4 55730381 55730591 -99899529 + ID_B1 SINE B4 14 224 0 6 1010 315 286 109 70 chr4 55730474 55730695 -99899425 - YREP_Mm Unknown Unknown -1522 290 60 6 1010 916 25 25 0 chr4 55730695 55730817 -99899303 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 6 1010 209 222 0 0 chr4 55731212 55731257 -99898863 + T-rich Low_complexity Low_complexity 1 45 0 6 1010 447 240 19 0 chr4 55731299 55731403 -99898717 + MER121 Unknown Unknown 139 244 -168 6 1010 453 286 0 0 chr4 55731762 55731867 -99898253 + PB1D10 SINE Alu 1 105 -12 6 1010 253 200 0 74 chr4 55731874 55731928 -99898192 + ZP3AR Satellite Satellite 33 82 -130 6 1010 435 200 13 0 chr4 55731893 55731968 -99898152 + ID4_ SINE ID 6 81 -2 6 1010 466 310 91 54 chr4 55732008 55732233 -99897887 + MER44A DNA MER2_type 1 242 -97 6 1010 486 0 0 0 chr4 55732233 55732287 -99897833 + (CATA)n Simple_repeat Simple_repeat 3 56 0 6 1010 466 310 91 54 chr4 55732287 55732358 -99897762 + MER44A DNA MER2_type 243 308 -31 6 1010 186 71 0 0 chr4 55733560 55733588 -99896532 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1010 504 277 11 112 chr4 55733590 55733777 -99896343 - B4A SINE B4 -18 274 107 6 1010 206 276 152 67 chr4 55735183 55735288 -99894832 + MIRb SINE MIR 40 153 -115 6 1010 352 289 122 48 chr4 55735298 55735487 -99894633 + MER20 DNA MER1_type 17 219 0 6 1010 441 0 0 0 chr4 55736420 55736469 -99893651 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1010 432 0 0 0 chr4 55736493 55736541 -99893579 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1010 357 226 123 36 chr4 55736995 55737133 -99892987 + MLT1A1 LTR MaLR 259 408 0 6 1010 294 299 128 2 chr4 55738025 55738164 -99891956 + MIRb SINE MIR 64 221 -41 6 1010 249 83 0 0 chr4 55738344 55738380 -99891740 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1010 298 323 121 13 chr4 55738585 55738742 -99891378 + MIRb SINE MIR 23 196 -72 6 1010 226 325 0 35 chr4 55739428 55739514 -99890606 + ID4_ SINE ID 1 83 0 6 1010 935 274 125 20 chr4 55740003 55740346 -99889774 - MTEa LTR MaLR 0 379 1 6 1010 242 106 0 21 chr4 55740921 55740969 -99889151 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1010 221 191 21 0 chr4 55741054 55741101 -99889019 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 6 1010 258 361 10 10 chr4 55741412 55741510 -99888610 - MLT1H LTR MaLR -379 170 73 6 1010 434 330 213 36 chr4 55743647 55743952 -99886168 - ORR1E LTR MaLR 0 359 1 6 1010 1039 72 13 7 chr4 55744265 55744419 -99885701 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 6 1010 405 0 0 0 chr4 55744582 55744627 -99885493 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1010 1385 62 0 11 chr4 55744691 55744871 -99885249 - L1_Mus1 LINE L1 0 6567 6390 6 1010 558 43 0 0 chr4 55745402 55745471 -99884649 + (GGAGA)n Simple_repeat Simple_repeat 2 70 0 6 1010 237 119 0 0 chr4 55745709 55745751 -99884369 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1010 424 262 8 47 chr4 55745755 55745883 -99884237 - B1F SINE Alu -22 127 5 6 1010 496 341 181 13 chr4 55747053 55747488 -99882632 + MLT1H1 LTR MaLR 34 542 -13 6 1010 326 335 144 16 chr4 55747570 55747764 -99882356 - L1ME3A LINE L1 -285 5888 5670 6 1010 606 336 32 104 chr4 55747765 55748149 -99881971 + ORR1E LTR MaLR 1 369 -1 6 1010 1002 311 76 25 chr4 55748322 55748820 -99881300 + Charlie13a DNA Charlie 88 658 -856 6 1010 234 0 0 0 chr4 55748923 55748949 -99881171 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1010 685 311 53 8 chr4 55748950 55749196 -99880924 + MLT2C1 LTR ERVL 6 262 -135 6 1010 242 290 161 0 chr4 55749219 55749312 -99880808 - PB1D10 SINE Alu -1 116 9 6 1010 240 264 158 47 chr4 55749527 55749654 -99880466 + Charlie13a DNA Charlie 819 959 -555 6 1010 320 258 98 61 chr4 55750509 55750641 -99879479 + ID_B1 SINE B4 82 218 -6 6 1010 360 256 47 81 chr4 55750749 55750898 -99879222 - MLT1A LTR MaLR -230 144 1 6 1010 191 333 156 7 chr4 55753307 55753461 -99876659 - MIRb SINE MIR -42 226 50 6 1010 710 325 10 5 chr4 55753623 55753827 -99876293 - ID_B1 SINE B4 0 224 20 6 1010 1410 140 4 39 chr4 55754897 55755128 -99874992 - URR1A DNA MER1_type -3 223 1 6 1010 628 300 86 46 chr4 55755157 55755437 -99874683 + B4A SINE B4 2 292 0 6 1010 382 101 29 0 chr4 55755483 55755552 -99874568 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1010 1419 180 89 105 chr4 55755813 55756185 -99873935 + ORR1B2 LTR MaLR 2 367 0 6 1010 709 275 7 0 chr4 55756281 55756419 -99873701 + RSINE1 SINE B4 7 145 -20 6 1010 210 105 0 0 chr4 55756432 55756470 -99873650 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 6 1010 841 265 98 59 chr4 55756526 55756863 -99873257 + MLT1E1 LTR MaLR 305 654 0 6 1010 287 222 0 87 chr4 55757105 55757174 -99872946 + MIRc SINE MIR 94 156 -112 6 1010 700 267 94 5 chr4 55757194 55757397 -99872723 - ID_B1 SINE B4 -2 222 2 6 1010 237 367 82 24 chr4 55757708 55757878 -99872242 - LTR16C LTR ERVL -199 290 111 6 1010 829 305 4 22 chr4 55758320 55758598 -99871522 + B4A SINE B4 2 274 -18 6 1010 474 18 0 0 chr4 55760113 55760168 -99869952 + (TATG)n Simple_repeat Simple_repeat 3 57 0 6 1010 888 238 0 0 chr4 55760168 55760332 -99869788 - B3A SINE B2 -34 164 1 6 1010 1347 66 0 0 chr4 55760596 55760777 -99869343 - L1Md_F2 LINE L1 0 6582 6402 6 1010 318 333 16 47 chr4 55760787 55760916 -99869204 - B1F SINE Alu -7 142 18 6 1010 401 321 20 95 chr4 55761696 55761844 -99868276 + RSINE1 SINE B4 3 139 -26 6 1010 468 0 0 0 chr4 55761847 55761899 -99868221 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1010 893 198 70 0 chr4 55762211 55762383 -99867737 - B3 SINE B2 -32 184 1 6 1010 242 257 29 0 chr4 55762493 55762563 -99867557 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 6 1010 492 99 0 0 chr4 55762563 55762634 -99867486 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1010 411 174 58 99 chr4 55763406 55763527 -99866593 + MT2B LTR ERVL 149 264 -337 6 1010 1127 35 0 0 chr4 55763421 55763562 -99866558 + B1_Mus1 SINE Alu 8 148 0 6 1010 936 27 0 0 chr4 55763626 55763737 -99866383 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 6 1010 27 29 0 0 chr4 55763738 55763772 -99866348 + AT_rich Low_complexity Low_complexity 1 34 0 6 1010 1067 107 6 0 chr4 55764105 55764283 -99865837 + (TATG)n Simple_repeat Simple_repeat 1 179 0 6 1010 378 333 0 8 chr4 55764298 55764425 -99865695 - B1_Mur1 SINE Alu -13 136 11 6 1010 1770 168 3 61 chr4 55764452 55764782 -99865338 + ORR1A3 LTR MaLR 1 311 -15 6 1010 242 299 11 0 chr4 55764956 55765043 -99865077 + L1MA5 LINE L1 6193 6280 -20 6 1010 3521 266 57 11 chr4 55765373 55766301 -99863819 - RCHARR1 DNA MER1_type -1 973 3 6 1010 207 0 0 0 chr4 55767085 55767108 -99863012 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1010 1174 75 0 0 chr4 55767108 55767246 -99862874 - B1_Mus1 SINE Alu -9 139 2 6 1010 372 351 84 42 chr4 55767431 55767693 -99862427 - L1ME3A LINE L1 -8 6165 5893 6 1010 216 97 0 0 chr4 55767779 55767810 -99862310 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1010 310 360 132 0 chr4 55767825 55767961 -99862159 - L1ME3A LINE L1 -422 5818 5665 6 1010 1382 197 166 21 chr4 55767997 55768334 -99861786 + MTD LTR MaLR 34 419 0 6 1010 387 0 0 0 chr4 55768667 55768710 -99861410 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1010 331 340 76 21 chr4 55768864 55769008 -99861112 + LTR33 LTR ERVL 31 182 -333 6 1010 360 0 0 0 chr4 55769251 55769291 -99860829 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1010 735 271 40 67 chr4 55769292 55769350 -99860770 + B4 SINE B4 48 98 -194 6 1010 651 60 0 0 chr4 55769350 55769434 -99860686 + (GGAGA)n Simple_repeat Simple_repeat 3 86 0 6 1010 735 271 40 67 chr4 55769434 55769600 -99860520 + B4 SINE B4 99 266 -26 6 1010 326 328 168 27 chr4 55769882 55770067 -99860053 - Charlie8 DNA MER1_type -2154 274 64 6 1010 402 74 0 0 chr4 55771063 55771117 -99859003 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1010 216 0 0 0 chr4 55771413 55771437 -99858683 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 6 1010 571 240 19 0 chr4 55771441 55771545 -99858575 - B1_Mur1 SINE Alu -13 136 31 6 1010 559 252 96 83 chr4 55771545 55771774 -99858346 - B4A SINE B4 -60 232 1 6 1010 342 0 0 0 chr4 55771789 55771827 -99858293 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1010 324 0 0 0 chr4 55771827 55771862 -99858258 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1010 439 344 73 21 chr4 55772091 55772379 -99857741 - L1M5 LINE L1 -458 5666 5364 6 1010 238 295 130 15 chr4 55772429 55772560 -99857560 + MIRc SINE MIR 14 159 -109 6 1010 434 271 435 16 chr4 55772560 55772809 -99857311 + MLT1A LTR MaLR 1 353 -12 6 1010 851 84 21 14 chr4 55773869 55774013 -99856107 + (TCTA)n Simple_repeat Simple_repeat 2 146 0 6 1010 910 257 71 15 chr4 55774032 55774301 -99855819 - B4A SINE B4 -7 285 2 6 1010 21 36 0 0 chr4 55774301 55774329 -99855791 + AT_rich Low_complexity Low_complexity 1 28 0 6 1010 840 210 0 20 chr4 55774330 55774476 -99855644 - B1_Mur1 SINE Alu -1 148 6 7 1010 639 203 262 0 chr4 55774485 55774672 -99855448 - L1MA6 LINE L1 -1 6299 6064 7 1010 290 295 161 8 chr4 55774906 55775036 -99855084 + MER5B DNA MER1_type 29 178 0 7 1010 327 293 86 43 chr4 55775040 55775179 -99854941 + B1F1 SINE Alu 3 147 -2 7 1010 314 272 12 24 chr4 55775188 55775271 -99854849 + ID4_ SINE ID 2 83 0 7 1010 435 246 9 9 chr4 55775896 55776011 -99854109 - PB1D10 SINE Alu 0 117 3 7 1010 239 329 46 97 chr4 55776328 55776503 -99853617 - MER45B DNA Tip100 -758 282 117 7 1010 3122 75 2 2 chr4 55777078 55777478 -99852642 - MTB LTR MaLR 0 400 1 7 1010 240 263 12 62 chr4 55777927 55778008 -99852112 - B1F SINE Alu -53 96 20 7 1010 569 52 13 0 chr4 55778062 55778139 -99851981 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 7 1010 424 246 23 8 chr4 55778267 55778398 -99851722 - B1F SINE Alu 0 149 17 7 1010 268 311 71 52 chr4 55778273 55778483 -99851637 - ID_B1 SINE B4 -6 218 5 7 1010 290 284 194 0 chr4 55778487 55778642 -99851478 - L1MA10 LINE L1 -8 6326 6142 7 1010 811 264 112 52 chr4 55778723 55779070 -99851050 + L1MB1 LINE L1 5552 5919 -249 7 1010 444 254 36 0 chr4 55780115 55780243 -99849877 + B1F SINE Alu 2 133 -16 7 1010 1185 106 0 0 chr4 55780263 55780443 -99849677 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1010 354 342 82 62 chr4 55781103 55781359 -99848761 - MIRb SINE MIR -1 261 1 7 1010 228 135 0 0 chr4 55781493 55781530 -99848590 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1010 254 291 10 10 chr4 55781617 55781681 -99848439 + polypyrimidine Low_complexity Low_complexity 41 104 0 7 1010 651 294 0 0 chr4 55781681 55781834 -99848286 - RSINE1 SINE B4 -8 157 5 7 1010 254 291 10 10 chr4 55781834 55781873 -99848247 + polypyrimidine Low_complexity Low_complexity 2 40 0 7 1010 324 227 26 13 chr4 55781878 55781954 -99848166 - B1_Mur1 SINE Alu 0 149 73 7 1010 363 96 0 0 chr4 55781955 55782007 -99848113 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 7 1010 565 307 115 0 chr4 55782007 55782199 -99847921 - ID_B1 SINE B4 -9 215 2 7 1010 445 242 15 46 chr4 55783067 55783197 -99846923 - RSINE1 SINE B4 -37 128 3 7 1010 432 250 87 0 chr4 55783200 55783304 -99846816 - PB1D10 SINE Alu -2 115 3 7 1010 348 24 0 0 chr4 55784387 55784428 -99845692 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1010 264 233 17 0 chr4 55785306 55785366 -99844754 - B3 SINE B2 -6 210 150 7 1010 1706 255 27 5 chr4 55785378 55785788 -99844332 + MTD LTR MaLR 1 419 0 7 1010 1545 175 106 34 chr4 55785841 55786190 -99843930 + ORR1D1 LTR MaLR 1 374 0 7 1010 258 344 49 8 chr4 55786273 55786396 -99843724 - MER5A1 DNA MER1_type -31 135 8 7 1010 256 326 30 40 chr4 55787124 55787223 -99842897 - B4A SINE B4 -194 98 1 7 1010 540 0 0 0 chr4 55789630 55789690 -99840430 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1010 423 234 31 31 chr4 55789903 55790031 -99840089 + MER5A1 DNA MER1_type 3 130 -36 7 1010 342 98 0 0 chr4 55790131 55790182 -99839938 + (TCC)n Simple_repeat Simple_repeat 2 52 0 7 1010 380 268 191 28 chr4 55790253 55790468 -99839652 - Lx8 LINE L1 -115 7358 7109 7 1010 195 0 27 54 chr4 55790487 55790524 -99839596 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1010 224 291 48 19 chr4 55791009 55791114 -99839006 - MIRb SINE MIR -103 165 58 7 1010 314 312 108 62 chr4 55791171 55791478 -99838642 + MLT1A0 LTR MaLR 42 362 -3 7 1010 246 250 22 56 chr4 55791933 55792022 -99838098 + B4 SINE B4 7 92 -200 7 1010 328 255 41 31 chr4 55792035 55792132 -99837988 + B4 SINE B4 190 287 -5 7 1010 396 0 0 0 chr4 55792138 55792182 -99837938 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1010 233 312 12 0 chr4 55793320 55793400 -99836720 + CT-rich Low_complexity Low_complexity 1 81 0 7 1010 253 158 263 0 chr4 55793402 55793459 -99836661 - PB1D10 SINE Alu -18 99 28 7 1010 210 245 0 20 chr4 55793429 55793479 -99836641 - B1F1 SINE Alu -92 57 9 7 1010 223 339 16 49 chr4 55794752 55794777 -99835343 - B2_Mm2 SINE B2 -18 177 1 7 1010 652 292 27 1 chr4 55794777 55794935 -99835185 - RSINE1 SINE B4 -2 163 1 7 1010 1140 232 15 33 chr4 55795810 55796082 -99834038 + B4A SINE B4 3 269 -23 7 1010 417 39 0 0 chr4 55796083 55796134 -99833986 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1010 240 127 47 16 chr4 55796354 55796418 -99833702 + GA-rich Low_complexity Low_complexity 4 69 0 7 1010 202 277 0 0 chr4 55796438 55796485 -99833635 - MIR SINE MIR -80 128 82 7 1010 335 41 0 20 chr4 55796786 55796836 -99833284 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1010 260 297 32 21 chr4 55797838 55797931 -99832189 - MLT1J LTR MaLR -113 399 306 7 1010 197 178 22 0 chr4 55799568 55799613 -99830507 + GA-rich Low_complexity Low_complexity 1 46 0 7 1010 400 196 112 47 chr4 55800364 55800471 -99829649 - ID_B1 SINE B4 -9 215 102 7 1010 269 215 152 0 chr4 55800489 55800568 -99829552 - L1MB7 LINE L1 -31 6153 6063 7 1010 837 151 7 0 chr4 55800618 55800757 -99829363 - MTC LTR MaLR -54 367 228 7 1010 1226 90 0 6 chr4 55800757 55800936 -99829184 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1010 587 247 18 60 chr4 55800936 55800964 -99829156 - MTC LTR MaLR -187 209 182 7 1010 611 152 0 9 chr4 55800964 55801043 -99829077 + polypyrimidine Low_complexity Low_complexity 34 112 0 7 1010 1326 78 0 0 chr4 55801043 55801223 -99828897 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1010 611 152 0 9 chr4 55801223 55801256 -99828864 + polypyrimidine Low_complexity Low_complexity 1 33 0 7 1010 2893 51 3 0 chr4 55801374 55801728 -99828392 - L1_Mus1 LINE L1 -1 6566 6212 7 1010 432 0 0 0 chr4 55801899 55801947 -99828173 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1010 189 271 0 59 chr4 55802017 55802068 -99828052 + MIRb SINE MIR 203 250 -18 7 1010 369 263 12 12 chr4 55802846 55803187 -99826933 + CT-rich Low_complexity Low_complexity 1 341 0 7 1010 263 250 0 27 chr4 55804588 55804662 -99825458 + PB1D10 SINE Alu 43 114 -3 7 1010 1122 107 0 0 chr4 55805583 55805751 -99824369 + (TC)n Simple_repeat Simple_repeat 1 168 0 7 1010 261 0 0 0 chr4 55805753 55805782 -99824338 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1010 201 269 0 0 chr4 55806063 55806130 -99823990 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1010 585 228 50 19 chr4 55806130 55806291 -99823829 - B3 SINE B2 -13 203 38 7 1010 509 238 73 6 chr4 55807097 55807262 -99822858 + L1ME2z LINE L1 5694 5869 -575 7 1010 334 235 200 20 chr4 55808113 55808213 -99821907 - PB1D7 SINE Alu 0 120 3 7 1010 6252 114 7 9 chr4 55808499 55809410 -99820710 - Lx2 LINE L1 -1 6996 6088 7 1010 263 191 0 0 chr4 55809615 55809662 -99820458 + PB1D7 SINE Alu 66 112 -8 7 1010 321 68 0 0 chr4 55809664 55809708 -99820412 + (CAA)n Simple_repeat Simple_repeat 3 46 0 7 1010 827 150 0 29 chr4 55809746 55809883 -99820237 - Lx2 LINE L1 -643 6354 6222 7 1010 297 205 0 15 chr4 55809970 55810045 -99820075 - ID4 SINE ID -67 85 12 7 1010 297 0 0 0 chr4 55811491 55811524 -99818596 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 7 1010 1217 90 6 0 chr4 55811525 55811702 -99818418 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 7 1010 2398 293 65 13 chr4 55811717 55812498 -99817622 - Lx8 LINE L1 -64 7409 6588 7 1010 345 146 184 44 chr4 55812664 55812800 -99817320 + Lx9 LINE L1 7489 7643 -1 7 1010 403 179 21 21 chr4 55812811 55812908 -99817212 + MER2 DNA MER2_type 191 287 -58 7 1010 301 268 0 0 chr4 55813170 55813241 -99816879 + MTEa LTR MaLR 3 73 -306 7 1010 245 306 141 0 chr4 55813276 55813361 -99816759 - B1F SINE Alu -52 97 1 7 1010 972 162 136 250 chr4 55813796 55814216 -99815904 - ORR1D1 LTR MaLR 0 374 3 7 1010 762 290 52 39 chr4 55815678 55816059 -99814061 - LTR37A LTR ERV1 -5 421 36 7 1010 290 258 54 33 chr4 55816319 55816411 -99813709 + PB1D7 SINE Alu 2 95 -25 7 1010 871 261 57 57 chr4 55817192 55817472 -99812648 + B4 SINE B4 1 280 -12 7 1010 538 295 13 7 chr4 55818081 55818231 -99811889 - ID_B1 SINE B4 0 224 74 7 1010 254 229 14 0 chr4 55818514 55818584 -99811536 + CT-rich Low_complexity Low_complexity 2 72 0 7 1010 711 261 111 0 chr4 55819198 55819405 -99810715 - B4A SINE B4 -58 234 5 7 1010 445 245 126 25 chr4 55820905 55821064 -99809056 + MIR SINE MIR 51 225 -37 7 1010 486 299 126 91 chr4 55821425 55821830 -99808290 + MLT1G3 LTR MaLR 3 421 -174 7 1010 475 276 72 39 chr4 55822938 55823119 -99807001 - RMER30 DNA MER1_type -3 199 13 7 1010 26 0 0 0 chr4 55823119 55823145 -99806975 + AT_rich Low_complexity Low_complexity 1 26 0 7 1010 408 361 7 0 chr4 55823452 55823596 -99806524 - MER63A DNA AcHobo -57 153 9 7 1010 432 0 0 0 chr4 55824554 55824602 -99805518 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1010 441 0 0 0 chr4 55825376 55825425 -99804695 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 7 1010 270 286 0 0 chr4 55825936 55826006 -99804114 + ID4_ SINE ID 3 72 -11 7 1010 549 0 0 0 chr4 55827297 55827358 -99802762 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1010 283 257 100 0 chr4 55827484 55827554 -99802566 - ID4_ SINE ID -3 80 4 7 1010 414 255 71 0 chr4 55827745 55827886 -99802234 + MIR3 SINE MIR 33 183 -25 8 1010 21 0 0 0 chr4 55828165 55828186 -99801934 + AT_rich Low_complexity Low_complexity 1 21 0 8 1010 423 0 0 0 chr4 55828634 55828681 -99801439 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1010 270 348 0 25 chr4 55828687 55828805 -99801315 + (CATA)n Simple_repeat Simple_repeat 3 117 0 8 1010 384 22 0 0 chr4 55829868 55829913 -99800207 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1010 1088 273 20 24 chr4 55831638 55831931 -99798189 - B4A SINE B4 0 292 1 8 1010 731 318 74 63 chr4 55832139 55832585 -99797535 + MLT1C LTR MaLR 11 461 -6 8 1010 361 259 12 0 chr4 55833173 55833254 -99796866 - RSINE1 SINE B4 -80 85 4 8 1010 390 143 0 0 chr4 55833546 55833623 -99796497 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1010 21 36 0 0 chr4 55834284 55834312 -99795808 + AT_rich Low_complexity Low_complexity 1 28 0 8 1010 804 224 28 37 chr4 55834314 55834532 -99795588 - B3 SINE B2 0 216 1 8 1010 801 103 0 0 chr4 55835256 55835373 -99794747 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 8 1010 297 203 0 0 chr4 55835433 55835486 -99794634 + T-rich Low_complexity Low_complexity 17 69 0 8 1010 1119 88 7 0 chr4 55835486 55835633 -99794487 - B1_Mus1 SINE Alu 0 148 1 8 1010 297 203 0 0 chr4 55835633 55835648 -99794472 + T-rich Low_complexity Low_complexity 2 16 0 8 1010 207 359 42 17 chr4 55836207 55836326 -99793794 + MIRb SINE MIR 96 217 -51 8 1010 432 37 0 0 chr4 55836360 55836414 -99793706 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 126 764 272 153 8 chr4 55836438 55836686 -99793434 - B4 SINE B4 -7 285 2 8 1011 1333 253 58 20 chr4 55839571 55839964 -99790156 + MTD LTR MaLR 12 400 -19 8 1011 588 194 0 0 chr4 55840056 55840195 -99789925 + (TA)n Simple_repeat Simple_repeat 1 139 0 8 1011 213 121 0 0 chr4 55840196 55840229 -99789891 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1011 950 279 88 38 chr4 55840246 55840645 -99789475 - MTD LTR MaLR 0 419 1 8 1011 252 0 0 0 chr4 55841013 55841041 -99789079 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1011 7191 43 11 0 chr4 55841120 55841971 -99788149 - L1_Mus1 LINE L1 0 6567 5708 8 1011 2437 42 0 0 chr4 55841976 55842262 -99787858 + L1_Mus1 LINE L1 5301 5586 -297 8 1011 7939 55 2 3 chr4 55842262 55843259 -99786861 + L1Md_F2 LINE L1 5587 6582 0 8 1011 2071 57 0 0 chr4 55843262 55843509 -99786611 + L1_Mm LINE L1 5441 5687 -196 8 1011 234 245 144 19 chr4 55843510 55843614 -99786506 - RSINE1 SINE B4 -46 119 3 8 1011 2448 164 30 5 chr4 55844176 55844581 -99785539 - MTC LTR MaLR -4 417 3 8 1011 3519 143 29 5 chr4 55845006 55845589 -99784531 + MERVL_2A-int LTR ERVL 5085 5681 -80 8 1011 240 278 44 0 chr4 55845589 55845679 -99784441 + ORR1A3-int LTR MaLR 546 639 -1324 8 1011 326 143 0 0 chr4 55845679 55845735 -99784385 + MERVL_2A-int LTR ERVL 5706 5761 0 8 1011 1066 250 57 54 chr4 55845735 55846196 -99783924 + MT2B LTR ERVL 1 540 -61 8 1011 558 0 0 0 chr4 55846199 55846261 -99783859 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1011 405 0 0 0 chr4 55846474 55846519 -99783601 + (TAAAG)n Simple_repeat Simple_repeat 3 47 0 8 1011 17744 78 27 10 chr4 55846519 55849699 -99780421 - L1VL4 LINE L1 -135 3424 193 8 1011 495 0 0 0 chr4 55850176 55850231 -99779889 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 8 1011 295 282 19 28 chr4 55850990 55851096 -99779024 + MER5A DNA MER1_type 1 105 -84 8 1011 1699 211 32 32 chr4 55851215 55851591 -99778529 + MTEa LTR MaLR 2 377 -2 8 1011 201 311 22 22 chr4 55852008 55852100 -99778020 - L2b LINE L2 -7 3368 3277 8 1011 245 250 0 18 chr4 55852847 55852904 -99777216 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1011 249 274 71 12 chr4 55853424 55853509 -99776611 + MLT1B LTR MaLR 1 90 -300 8 1011 374 274 195 58 chr4 55853523 55853597 -99776523 + MLT1B LTR MaLR 157 232 -158 8 1011 848 279 77 6 chr4 55853597 55853933 -99776187 - MLT1A0 LTR MaLR -2 363 4 8 1011 374 274 195 58 chr4 55853933 55854048 -99776072 + MLT1B LTR MaLR 233 372 -18 8 1011 342 0 0 0 chr4 55854610 55854648 -99775472 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1011 573 285 101 76 chr4 55854664 55854941 -99775179 - B4A SINE B4 -4 288 5 8 1011 21 0 0 0 chr4 55855510 55855531 -99774589 + AT_rich Low_complexity Low_complexity 1 21 0 8 1011 734 241 42 33 chr4 55855533 55855747 -99774373 - B3 SINE B2 0 216 1 8 1011 921 277 40 52 chr4 55855747 55856074 -99774046 + MTEa LTR MaLR 48 370 -9 8 1011 453 110 0 0 chr4 55858694 55858776 -99771344 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 1011 914 231 6 0 chr4 55858776 55858945 -99771175 - B3A SINE B2 -28 170 1 8 1011 199 355 18 35 chr4 55859195 55859309 -99770811 + MIRb SINE MIR 40 151 -117 8 1011 180 97 0 0 chr4 55859635 55859666 -99770454 + (TTTTTA)n Simple_repeat Simple_repeat 5 35 0 8 1011 668 12 12 0 chr4 55859786 55859867 -99770253 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 8 1011 370 305 71 35 chr4 55861058 55861255 -99768865 + RLTR16 LTR ERVK 31 234 -271 8 1011 2117 177 115 16 chr4 55862778 55863282 -99766838 - RMER15 LTR ERVL 0 575 22 8 1011 25 0 0 0 chr4 55863492 55863517 -99766603 + AT_rich Low_complexity Low_complexity 1 25 0 8 1011 976 282 71 6 chr4 55863852 55864191 -99765929 - MLT1A0 LTR MaLR 0 365 5 8 1011 427 350 107 21 chr4 55864394 55864683 -99765437 - LTR33C LTR ERVL -285 344 31 8 1011 962 272 37 30 chr4 55864845 55865144 -99764976 - MTE2b LTR MaLR 0 379 79 8 1011 611 241 15 15 chr4 55865149 55865284 -99764836 + B1_Mur2 SINE Alu 6 140 -9 8 1011 210 71 0 0 chr4 55865297 55865325 -99764795 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 8 1011 229 235 81 23 chr4 55865344 55865431 -99764689 - MTE2b LTR MaLR -322 97 6 8 1011 576 250 40 0 chr4 55865710 55865834 -99764286 + B1F SINE Alu 3 131 -18 8 1011 8534 32 0 0 chr4 55865840 55866888 -99763232 - L1Md_T LINE L1 0 6582 5535 8 1011 922 101 14 0 chr4 55867392 55867530 -99762590 - B1_Mus1 SINE Alu 0 148 9 8 1011 862 267 119 45 chr4 55868267 55868604 -99761516 - MTEa LTR MaLR 0 379 18 8 1011 809 297 86 56 chr4 55868610 55869041 -99761079 - MTEa-int LTR MaLR -2 1578 1135 8 1011 699 12 0 0 chr4 55870739 55870819 -99759301 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 8 1011 446 278 63 0 chr4 55870905 55871031 -99759089 - ID_B1 SINE B4 0 224 91 8 1011 686 224 27 7 chr4 55871392 55871540 -99758580 + B3 SINE B2 2 152 -64 8 1011 351 0 0 0 chr4 55871544 55871583 -99758537 + (CATA)n Simple_repeat Simple_repeat 2 40 0 8 1011 455 313 23 35 chr4 55872867 55873039 -99757081 + B3 SINE B2 2 171 -45 8 1011 261 0 0 0 chr4 55873044 55873073 -99757047 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1011 7820 52 7 0 chr4 55873309 55874271 -99755849 - L1_Mm LINE L1 -912 4971 4003 8 1011 38353 29 5 0 chr4 55874306 55880521 -99749599 - L1Md_T LINE L1 0 6585 242 8 1011 754 22 0 0 chr4 55880520 55880610 -99749510 - L1_Mm LINE L1 -1865 4018 3929 8 1011 5154 58 2 0 chr4 55880606 55881242 -99748878 + L1Md_F2 LINE L1 4950 5586 -297 8 1011 7818 53 12 7 chr4 55881242 55882221 -99747899 + L1Md_F2 LINE L1 5587 6570 -12 8 1011 494 296 6 26 chr4 55882507 55882663 -99747457 - B4 SINE B4 0 292 140 8 1011 356 262 87 20 chr4 55883738 55883933 -99746187 + L1M4c LINE L1 2268 2475 -3909 8 1011 1031 250 17 38 chr4 55883934 55884225 -99745895 + B4A SINE B4 1 285 -7 8 1011 587 84 11 0 chr4 55884714 55884809 -99745311 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1011 425 312 84 17 chr4 55885038 55885276 -99744844 + MLT1D LTR MaLR 117 370 -135 8 1011 935 82 8 0 chr4 55885399 55885533 -99744587 + (TTCC)n Simple_repeat Simple_repeat 3 137 0 8 1011 255 286 31 23 chr4 55886185 55886314 -99743806 + L1M4c LINE L1 5358 5487 -895 8 1011 466 323 166 13 chr4 55886424 55886664 -99743456 - MLT2B1 LTR ERVL -61 459 167 8 1011 294 29 0 0 chr4 55886664 55886699 -99743421 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 8 1011 466 323 166 13 chr4 55886699 55886856 -99743264 - MLT2B1 LTR ERVL -354 166 1 8 1011 221 176 40 13 chr4 55886881 55886956 -99743164 + CT-rich Low_complexity Low_complexity 2 78 0 8 1011 336 216 123 38 chr4 55887042 55887148 -99742972 - PB1D10 SINE Alu -1 116 2 8 1011 488 281 34 62 chr4 55887352 55887561 -99742559 + MER58B DNA MER1_type 43 245 -96 8 1011 227 339 55 0 chr4 55887869 55887978 -99742142 - 5S rRNA rRNA 0 121 7 8 1011 340 259 0 0 chr4 55887899 55887984 -99742136 - AmnSINE1 SINE SINE -490 85 1 8 1011 215 305 178 19 chr4 55888364 55888471 -99741649 + MIRc SINE MIR 2 125 -143 8 1011 274 344 57 0 chr4 55888768 55888890 -99741230 - L3 LINE CR1 -75 4414 4286 8 1011 2191 143 15 18 chr4 55890384 55890712 -99739408 + ORR1A2 LTR MaLR 1 327 0 8 1011 817 281 90 50 chr4 55891225 55891502 -99738618 - B4A SINE B4 0 292 5 8 1011 312 48 0 0 chr4 55892017 55892059 -99738061 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1011 477 47 0 0 chr4 55892059 55892122 -99737998 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1011 379 114 34 0 chr4 55892599 55892687 -99737433 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 8 1011 320 243 14 0 chr4 55892697 55892771 -99737349 - HAL1-3A_ME LINE L1 -809 2049 1975 8 1011 298 247 93 0 chr4 55892906 55893003 -99737117 - Lx LINE L1 -29 6968 6863 8 1011 707 165 63 0 chr4 55893000 55893127 -99736993 - Lx LINE L1 -182 6472 6338 8 1011 429 36 0 0 chr4 55893765 55893820 -99736300 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1011 742 234 126 39 chr4 55894036 55894218 -99735902 + B3A SINE B2 1 198 0 8 1011 200 336 59 37 chr4 55894304 55894440 -99735680 + MIRc SINE MIR 19 157 -111 8 1011 183 114 0 0 chr4 55895198 55895233 -99734887 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1011 588 14 0 0 chr4 55895729 55895798 -99734322 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 8 1011 220 219 0 15 chr4 55895798 55895863 -99734257 + T-rich Low_complexity Low_complexity 2 65 0 8 1011 5253 58 2 2 chr4 55895867 55896485 -99733635 - L1_Mus1 LINE L1 -1 6566 5949 8 1011 704 25 0 0 chr4 55896486 55896567 -99733553 + L1_Mus1 LINE L1 5862 5942 -625 8 1011 1102 164 12 30 chr4 55896740 55897039 -99733081 - MTC LTR MaLR -2 419 70 8 1011 353 22 22 0 chr4 55897050 55897096 -99733024 + (TTA)n Simple_repeat Simple_repeat 1 47 0 9 1011 290 263 59 29 chr4 55897096 55897198 -99732922 - Lx5 LINE L1 -16 7034 6930 9 1011 509 156 0 0 chr4 55897198 55897275 -99732845 - MTC LTR MaLR -341 80 4 8 1011 435 172 35 0 chr4 55897451 55897538 -99732582 + MLT1A0 LTR MaLR 276 365 0 9 1011 376 200 27 0 chr4 55897669 55897744 -99732376 - ID SINE ID -146 78 2 9 1011 274 278 17 182 chr4 55897753 55897929 -99732191 - B1F1 SINE Alu -2 147 1 9 1011 469 0 33 0 chr4 55898438 55898499 -99731621 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 1011 562 60 24 0 chr4 55899089 55899172 -99730948 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 9 1011 226 338 12 12 chr4 55899740 55899821 -99730299 - MIR SINE MIR -71 137 57 9 1011 26 0 0 0 chr4 55900421 55900447 -99729673 + AT_rich Low_complexity Low_complexity 1 26 0 9 1011 253 336 48 0 chr4 55902610 55902714 -99727406 - LTR33B LTR ERVL -3 500 392 9 1011 254 305 64 37 chr4 55903723 55903832 -99726288 + MLT1F LTR MaLR 2 113 -435 9 1011 751 313 116 15 chr4 55904075 55904403 -99725717 + MLT1A0 LTR MaLR 5 365 0 9 1011 704 71 10 0 chr4 55904853 55904952 -99725168 + (TG)n Simple_repeat Simple_repeat 2 101 0 9 1011 1593 251 60 5 chr4 55905983 55906380 -99723740 + MTD LTR MaLR 1 419 0 9 1011 627 159 0 0 chr4 55906398 55906511 -99723609 + (TGGA)n Simple_repeat Simple_repeat 1 113 0 9 1011 524 42 0 14 chr4 55906949 55907021 -99723099 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1011 1100 124 6 0 chr4 55907847 55908025 -99722095 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 9 1011 705 235 0 0 chr4 55908422 55908541 -99721579 - B1_Mur1 SINE Alu -21 128 10 9 1011 258 321 40 20 chr4 55908608 55908741 -99721379 - L2c LINE L2 -24 3351 3225 9 1011 706 271 117 113 chr4 55908832 55909335 -99720785 - MLT1D LTR MaLR 0 505 1 9 1011 1070 251 28 106 chr4 55909661 55910018 -99720102 - MTEa LTR MaLR 0 379 51 9 1011 22 0 0 0 chr4 55910040 55910062 -99720058 + AT_rich Low_complexity Low_complexity 1 22 0 9 1011 722 256 73 24 chr4 55910183 55910471 -99719649 - Lx9 LINE L1 0 7644 7343 9 1011 7684 96 29 15 chr4 55910778 55912012 -99718108 - L1_Mm LINE L1 -2172 3711 2357 9 1011 243 0 0 0 chr4 55912012 55912039 -99718081 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1011 7684 89 13 19 chr4 55912039 55912160 -99717960 - L1_Mm LINE L1 -1558 2356 2228 9 1011 5486 84 26 7 chr4 55912160 55912880 -99717240 + L1_Mus3 LINE L1 5902 6635 -3 9 1011 402 172 0 0 chr4 55913490 55913589 -99716531 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 1011 7126 13 0 0 chr4 55914248 55915002 -99715118 + L1Md_A LINE L1 5829 6582 0 9 1011 221 240 220 0 chr4 55916127 55916227 -99713893 + B4A SINE B4 2 123 -169 9 1011 483 18 0 0 chr4 55916233 55916289 -99713831 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1011 183 329 38 50 chr4 55916360 55916440 -99713680 - MIRb SINE MIR -126 142 64 9 1011 788 277 91 33 chr4 55916766 55917042 -99713078 - B4A SINE B4 0 292 1 9 1011 252 319 29 14 chr4 55917270 55917340 -99712780 + MIRc SINE MIR 16 86 -182 9 1011 281 323 37 37 chr4 55917710 55917845 -99712275 + MIRc SINE MIR 20 154 -114 9 1011 30 77 0 0 chr4 55919549 55919614 -99710506 + AT_rich Low_complexity Low_complexity 1 65 0 9 1011 385 346 44 32 chr4 55919807 55920058 -99710062 - L1MEg LINE L1 -5101 983 730 9 1011 6723 55 9 9 chr4 55920124 55920927 -99709193 - L1Md_F2 LINE L1 -14 6568 5766 9 1011 32611 79 12 3 chr4 55920927 55925929 -99704191 - L1Md_F2 LINE L1 -431 5452 446 9 1011 322 277 92 25 chr4 55926545 55926708 -99703412 - MIR SINE MIR -10 252 79 9 1011 190 136 45 0 chr4 55926794 55926838 -99703282 + CT-rich Low_complexity Low_complexity 2 47 0 9 1011 377 331 47 16 chr4 55926855 55926984 -99703136 - ID_B1 SINE B4 -5 219 87 9 1011 1099 309 44 19 chr4 55927059 55927422 -99702698 + Lx7 LINE L1 6272 6643 -1053 9 1011 401 231 11 3 chr4 55928296 55928401 -99701719 + L1M3 LINE L1 4106 4207 -1939 9 1011 1094 309 30 30 chr4 55928466 55928900 -99701220 + L1MD1 LINE L1 5809 6242 0 9 1011 252 234 0 0 chr4 55929165 55929212 -99700908 - RMER15-int LTR ERVL -66 4933 4887 9 1011 409 371 105 23 chr4 55929217 55929570 -99700550 + Lx8 LINE L1 7005 7386 -87 9 1011 363 160 0 0 chr4 55929667 55929742 -99700378 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1011 774 211 0 26 chr4 55929899 55930050 -99700070 + B1_Mus2 SINE Alu 1 147 0 9 1011 1014 9 0 0 chr4 55930069 55930184 -99699936 + (CAAAC)n Simple_repeat Simple_repeat 5 119 0 9 1011 1380 279 67 18 chr4 55932097 55932959 -99697161 - RCHARR1 DNA MER1_type -14 960 18 9 1011 579 341 34 20 chr4 55932973 55933291 -99696829 - L2a LINE L2 -118 3308 2987 9 1011 187 369 165 0 chr4 55933365 55933571 -99696549 - L2a LINE L2 -415 3004 2765 9 1011 305 238 0 0 chr4 55934277 55934340 -99695780 + L2a LINE L2 3361 3423 -3 9 1011 282 179 105 18 chr4 55934483 55934540 -99695580 - B1_Mur1 SINE Alu -8 141 80 9 1011 220 365 73 0 chr4 55937309 55937405 -99692715 - MIRm SINE MIR -158 118 16 9 1011 294 247 37 12 chr4 55937531 55937613 -99692507 + MIRc SINE MIR 142 225 -43 9 1011 498 291 23 8 chr4 55938745 55938873 -99691247 - ID_B1 SINE B4 -5 219 90 9 1011 483 343 55 15 chr4 55938929 55939201 -99690919 - MER34A LTR ERV1 -285 286 4 9 1011 630 165 0 0 chr4 55939424 55939551 -99690569 + CT-rich Low_complexity Low_complexity 3 129 0 9 1011 337 214 231 46 chr4 55939590 55939698 -99690422 - B1F SINE Alu -18 131 4 9 1011 916 334 23 19 chr4 55940279 55940587 -99689533 + MER58B DNA MER1_type 33 341 0 9 1011 1759 98 20 31 chr4 55940679 55940933 -99689187 - L1_Mus1 LINE L1 0 6567 6317 9 1011 285 198 54 75 chr4 55940991 55941084 -99689036 + MIR SINE MIR 169 259 -3 9 1011 21 0 0 0 chr4 55942661 55942682 -99687438 + AT_rich Low_complexity Low_complexity 1 21 0 9 1011 327 324 70 21 chr4 55943854 55943996 -99686124 - MIRb SINE MIR -87 181 33 9 1011 244 301 48 0 chr4 55944056 55944139 -99685981 + PB1D9 SINE Alu 32 118 -2 9 1011 448 77 26 0 chr4 55944153 55944231 -99685889 + (CCAA)n Simple_repeat Simple_repeat 3 82 0 9 1011 2863 118 53 9 chr4 55944650 55945087 -99685033 - Lx LINE L1 0 6654 6199 9 1011 502 116 0 0 chr4 55945090 55945159 -99684961 + Lx LINE L1 6027 6095 -559 9 1011 1502 156 4 0 chr4 55945982 55946207 -99683913 - URR1A DNA MER1_type 0 226 1 9 1011 230 323 33 47 chr4 55946304 55946466 -99683654 + MIR SINE MIR 21 180 -82 9 1011 414 261 6 158 chr4 55946661 55946825 -99683295 + B4A SINE B4 154 292 0 9 1011 315 250 0 0 chr4 55946825 55946909 -99683211 + (CATA)n Simple_repeat Simple_repeat 3 86 0 9 1011 1017 44 0 0 chr4 55947459 55947594 -99682526 + (GGA)n Simple_repeat Simple_repeat 3 137 0 9 1011 184 284 156 10 chr4 55947837 55947933 -99682187 + MIR SINE MIR 74 183 -79 9 1011 276 30 0 0 chr4 55948917 55948950 -99681170 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 9 1011 564 250 61 0 chr4 55949103 55949235 -99680885 - B1F1 SINE Alu -8 141 2 9 1011 231 401 39 8 chr4 55949925 55950053 -99680067 + L2a LINE L2 3295 3426 0 9 1011 227 390 44 0 chr4 55950467 55950626 -99679494 - MIRb SINE MIR -10 258 93 9 1011 504 0 0 0 chr4 55951932 55951988 -99678132 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1011 696 24 0 0 chr4 55952657 55952739 -99677381 + (GAA)n Simple_repeat Simple_repeat 3 84 0 9 1011 687 25 0 0 chr4 55952891 55952972 -99677148 + (TG)n Simple_repeat Simple_repeat 1 81 0 9 1011 872 228 163 32 chr4 55954283 55954708 -99675412 - Lx8 LINE L1 0 7473 6993 9 1011 245 272 262 0 chr4 55955154 55955257 -99674863 + MER20 DNA MER1_type 36 165 -54 9 1011 200 273 0 18 chr4 55955983 55956039 -99674081 + CT-rich Low_complexity Low_complexity 2 56 0 9 1011 182 224 85 73 chr4 55956466 55956548 -99673572 - MIRm SINE MIR -110 166 84 9 1011 210 118 0 0 chr4 55956628 55956662 -99673458 + (CAT)n Simple_repeat Simple_repeat 2 35 0 9 1011 300 53 0 0 chr4 55956663 55956701 -99673419 + (CAG)n Simple_repeat Simple_repeat 1 38 0 9 1011 379 355 51 95 chr4 55956742 55957175 -99672945 - L2b LINE L2 -42 3333 2920 9 1011 871 46 0 0 chr4 55958483 55958591 -99671529 - L1Md_F2 LINE L1 -276 6306 6199 9 1011 1822 117 4 11 chr4 55958591 55958851 -99671269 + L1Md_F2 LINE L1 6325 6582 0 9 1011 25 31 0 0 chr4 55959949 55959981 -99670139 + AT_rich Low_complexity Low_complexity 1 32 0 9 1011 573 241 0 25 chr4 55960838 55960957 -99669163 + PB1D10 SINE Alu 1 116 -1 9 1011 513 71 0 0 chr4 55961548 55961618 -99668502 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 9 1011 306 73 0 0 chr4 55961737 55961778 -99668342 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 9 1011 2089 129 9 61 chr4 55961778 55962124 -99667996 - ORR1A4 LTR MaLR -1 328 1 9 1011 7926 150 64 109 chr4 55962124 55964244 -99665876 - ORR1A4-int LTR MaLR 0 1792 21 9 1011 261 156 22 0 chr4 55964252 55964297 -99665823 + ORR1B1-int LTR MaLR 1918 1963 0 9 1011 1545 172 130 28 chr4 55964297 55964619 -99665501 + ORR1B1 LTR MaLR 38 392 -2 9 1011 207 0 0 0 chr4 55964622 55964645 -99665475 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1011 1318 99 28 6 chr4 55965982 55966164 -99663956 + B2_Mm1t SINE B2 1 186 -7 9 1011 267 324 148 21 chr4 55966259 55966401 -99663719 + B4 SINE B4 125 284 -8 9 1011 477 0 0 0 chr4 55966407 55966460 -99663660 + (TC)n Simple_repeat Simple_repeat 1 53 0 9 1011 321 26 0 0 chr4 55966460 55966497 -99663623 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1011 411 21 0 0 chr4 55966497 55966544 -99663576 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1011 767 310 70 60 chr4 55966551 55966944 -99663176 + MTE2a LTR MaLR 12 405 -14 9 1011 1365 272 39 19 chr4 55967238 55967601 -99662519 + ORR1D2 LTR MaLR 1 370 0 1 126 5774 230 51 30 chr4 55967601 55968944 -99661176 + ORR1D2-int LTR MaLR 1 1370 0 1 1012 1177 249 94 48 chr4 55968944 55969295 -99660825 + ORR1D2 LTR MaLR 1 367 -3 1 1012 948 342 14 41 chr4 55969494 55969787 -99660333 - B4 SINE B4 -2 290 6 1 1012 215 324 0 79 chr4 55970017 55970131 -99659989 - L2 LINE L2 -1007 2412 2308 1 1012 441 0 0 0 chr4 55971119 55971168 -99658952 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1012 417 39 0 0 chr4 55971168 55971218 -99658902 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1012 331 333 36 84 chr4 55971805 55972054 -99658066 + MIRb SINE MIR 26 262 0 1 1012 324 357 81 16 chr4 55973942 55974127 -99655993 + MIRb SINE MIR 27 223 -45 1 1012 730 289 139 44 chr4 55974215 55974849 -99655271 - Lx8 LINE L1 0 7473 6780 1 1012 189 213 106 0 chr4 55976021 55976068 -99654052 - MER5A DNA MER1_type -25 164 113 1 1012 325 331 94 30 chr4 55976544 55976809 -99653311 - L1ME3 LINE L1 0 6162 5881 1 1012 262 247 22 12 chr4 55977389 55977490 -99652630 + MLT2D LTR ERVL 1 101 -363 1 1012 632 295 187 28 chr4 55977497 55977516 -99652604 - B4A SINE B4 0 292 275 1 1012 240 35 0 0 chr4 55977516 55977545 -99652575 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1012 632 295 187 28 chr4 55977545 55977600 -99652520 - B4A SINE B4 -18 274 217 1 1012 2575 90 53 8 chr4 55977600 55977959 -99652161 - L1_Mus3 LINE L1 -1 6637 6263 1 1012 632 295 187 28 chr4 55977959 55978134 -99651986 - B4A SINE B4 -76 216 3 1 1012 375 329 111 44 chr4 55978134 55978448 -99651672 + MLT2D LTR ERVL 80 414 0 1 1012 252 383 56 0 chr4 55979103 55979178 -99650942 - ORR1E LTR MaLR -246 113 39 1 1012 198 0 0 0 chr4 55979178 55979200 -99650920 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1012 252 383 56 0 chr4 55979200 55979231 -99650889 - ORR1E LTR MaLR -321 38 2 1 1012 1557 65 16 0 chr4 55979285 55979469 -99650651 - B2_Mm2 SINE B2 -8 187 1 1 1012 1278 172 14 0 chr4 55980483 55980704 -99649416 + URR1B DNA MER1_type 2 225 0 1 1012 522 161 0 0 chr4 55980965 55981058 -99649062 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1012 248 311 95 0 chr4 55981636 55981710 -99648410 - MER5B DNA MER1_type -8 170 90 1 1012 1302 211 65 27 chr4 55981842 55982134 -99647986 - MTD LTR MaLR -3 416 114 1 1012 186 143 0 0 chr4 55982134 55982169 -99647951 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1012 393 240 90 0 chr4 55982193 55982293 -99647827 - MTD LTR MaLR -298 121 13 1 1012 1408 273 29 24 chr4 55982409 55982784 -99647336 + MTEa LTR MaLR 1 377 -2 1 1012 962 192 135 0 chr4 55983739 55983932 -99646188 - URR1A DNA MER1_type 0 226 8 1 1012 221 366 0 0 chr4 55984793 55984864 -99645256 - ID4 SINE ID -11 72 2 1 1012 195 307 39 29 chr4 55986026 55986130 -99643990 - MIRb SINE MIR -49 219 115 1 1012 593 390 71 15 chr4 55989286 55989624 -99640496 + LTR16A LTR ERVL 90 446 -5 1 1012 446 263 90 33 chr4 55989761 55989883 -99640237 - ORR1E LTR MaLR -215 144 16 1 1012 2321 163 55 20 chr4 55990134 55990573 -99639547 - Lx4B LINE L1 -3 7055 6602 1 1012 606 172 260 66 chr4 55990596 55990777 -99639343 - B3 SINE B2 0 216 1 1 1012 846 306 30 7 chr4 55990924 55991194 -99638926 + L3 LINE CR1 3524 3799 -690 1 1012 387 41 0 0 chr4 55992159 55992208 -99637912 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1012 446 125 0 12 chr4 55992669 55992750 -99637370 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1012 252 0 0 0 chr4 55992750 55992778 -99637342 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1012 245 140 0 17 chr4 55992778 55992836 -99637284 + GA-rich Low_complexity Low_complexity 2 58 0 1 1012 322 301 137 5 chr4 55993115 55993319 -99636801 - Charlie4a DNA MER1_type -251 257 27 1 1012 6712 88 35 10 chr4 55993354 55994281 -99635839 - Lx3_Mus LINE L1 -8 7001 6052 1 1012 9315 78 19 10 chr4 55994283 55995625 -99634495 + L1_Mur1 LINE L1 2377 3729 -2157 1 1012 2086 88 63 78 chr4 55996052 55996385 -99633735 + L1Md_F2 LINE L1 6243 6570 -12 1 1012 306 296 71 19 chr4 55997179 55997308 -99632812 + MTEb LTR MaLR 6 142 -228 1 1012 295 169 84 0 chr4 55997313 55997384 -99632736 - MTEb LTR MaLR -2 377 301 1 1012 246 333 122 0 chr4 55997378 55997501 -99632619 - MTEb LTR MaLR -241 138 1 1 1012 269 254 15 0 chr4 55997571 55997638 -99632482 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1012 445 279 17 10 chr4 55997648 55997795 -99632325 + MTEb LTR MaLR 238 379 0 1 1012 768 293 61 25 chr4 55998213 55998493 -99631627 + B4A SINE B4 2 291 -1 1 1012 230 160 0 20 chr4 55998594 55998645 -99631475 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 1 1012 268 391 16 7 chr4 55999342 55999500 -99630620 + MIRb SINE MIR 15 177 -91 1 1012 206 327 214 7 chr4 55999631 55999930 -99630190 + L2 LINE L2 2255 2615 -804 1 1012 216 67 0 0 chr4 56000143 56000173 -99629947 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 1012 185 65 32 0 chr4 56001226 56001257 -99628863 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1012 974 304 27 31 chr4 56001655 56001947 -99628173 - B4 SINE B4 0 292 2 3 1012 253 352 126 16 chr4 56002594 56002721 -99627399 - MIRc SINE MIR -70 198 58 4 1012 252 86 0 0 chr4 56003214 56003249 -99626871 + (CACAA)n Simple_repeat Simple_repeat 5 39 0 5 1012 296 200 20 0 chr4 56003489 56003539 -99626581 - RSINE1 SINE B4 -113 52 2 6 1012 4963 17 0 0 chr4 56003969 56004497 -99625623 - L1Md_A LINE L1 0 6582 6055 7 1012 21 0 0 0 chr4 56004786 56004807 -99625313 + AT_rich Low_complexity Low_complexity 1 21 0 8 1012 32999 140 93 31 chr4 56004876 56006041 -99624079 + Lx3_Mus LINE L1 5 1490 -4396 9 1012 2046 178 97 85 chr4 56006041 56006618 -99623502 + RLTR31A_Mm LTR ERVK 1 584 0 1 1012 32999 83 20 9 chr4 56006618 56011183 -99618937 + Lx3_Mus LINE L1 1491 6114 -895 9 1012 4966 82 28 2 chr4 56011186 56011821 -99618299 + Lx3_Mus LINE L1 6350 7001 -8 9 1012 447 19 0 0 chr4 56012278 56012330 -99617790 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1012 1194 40 0 0 chr4 56012330 56012477 -99617643 + (TCTCCC)n Simple_repeat Simple_repeat 4 151 0 1 1012 366 85 0 0 chr4 56012478 56012537 -99617583 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 1012 225 83 0 0 chr4 56012539 56012575 -99617545 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1012 572 248 68 144 chr4 56013251 56013364 -99616756 + ERVL-B4-int LTR ERVL 4308 4419 -1295 1 1012 1427 71 10 10 chr4 56013364 56013563 -99616557 + L1_Mus3 LINE L1 6423 6621 -17 1 1012 572 248 68 144 chr4 56013563 56013713 -99616407 + ERVL-B4-int LTR ERVL 4420 4551 -1163 1 1012 254 186 17 17 chr4 56013713 56013773 -99616347 + MTD LTR MaLR 360 419 0 1 1012 482 315 58 40 chr4 56014814 56015092 -99615028 - Lx8 LINE L1 -1 7472 7190 1 1012 228 318 83 38 chr4 56019149 56019306 -99610814 + MIRb SINE MIR 95 258 -10 1 1012 262 317 59 30 chr4 56019815 56019979 -99610141 - LTR16E1 LTR ERVL -3 565 395 2 1012 928 327 66 31 chr4 56020451 56020965 -99609155 + MT2A LTR ERVL 2 533 0 2 1012 188 167 66 115 chr4 56020973 56021034 -99609086 - L3 LINE CR1 -3514 975 918 2 1012 369 0 0 0 chr4 56022134 56022175 -99607945 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1012 199 261 61 71 chr4 56023212 56023311 -99606809 + MIRb SINE MIR 93 190 -78 2 1012 246 128 0 0 chr4 56027078 56027117 -99603003 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1012 243 218 36 0 chr4 56027805 56027860 -99602260 - MIRm SINE MIR -124 152 96 2 1012 2262 195 27 7 chr4 56029361 56029775 -99600345 - Lx5 LINE L1 0 7050 6629 2 1012 181 274 107 66 chr4 56029906 56030027 -99600093 + MIR SINE MIR 14 139 -123 2 1012 295 303 0 0 chr4 56030029 56030121 -99599999 + L1MA4 LINE L1 5768 5927 -373 2 1012 27 0 0 0 chr4 56030154 56030181 -99599939 + AT_rich Low_complexity Low_complexity 1 27 0 3 1012 185 361 43 87 chr4 56030883 56031044 -99599076 - MIRb SINE MIR -90 178 25 3 1012 24 0 0 0 chr4 56031850 56031874 -99598246 + AT_rich Low_complexity Low_complexity 1 24 0 3 1012 528 256 221 28 chr4 56031876 56032057 -99598063 - B3 SINE B2 0 216 1 3 1012 465 34 0 0 chr4 56032167 56032226 -99597894 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1012 384 258 106 24 chr4 56032261 56032292 -99597828 - B4 SINE B4 -29 263 231 3 1012 191 36 0 35 chr4 56032292 56032321 -99597799 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3 1012 384 258 106 24 chr4 56032321 56032412 -99597708 - B4 SINE B4 -62 230 132 3 1012 409 259 163 26 chr4 56032440 56032590 -99597530 - B4 SINE B4 -110 182 2 3 1012 223 26 0 71 chr4 56032597 56032639 -99597481 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 3 1012 609 76 0 0 chr4 56033604 56033696 -99596424 + (TTTTG)n Simple_repeat Simple_repeat 5 96 0 3 1012 549 304 43 19 chr4 56033754 56033962 -99596158 + LTR16A1 LTR ERVL 244 456 0 4 1012 321 93 0 0 chr4 56034026 56034080 -99596040 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 4 1012 441 0 0 0 chr4 56034081 56034130 -99595990 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1012 968 294 53 25 chr4 56034517 56034838 -99595282 - MER2 DNA MER2_type -8 337 8 4 1012 272 269 0 82 chr4 56037319 56037404 -99592716 - RSINE1 SINE B4 -82 83 6 4 1012 664 248 80 49 chr4 56037486 56037711 -99592409 + MTEb LTR MaLR 141 372 -7 4 1012 190 336 75 50 chr4 56037719 56037879 -99592241 - L2a LINE L2 -73 3353 3190 4 1012 234 329 17 134 chr4 56038334 56038506 -99591614 - L2b LINE L2 -96 3279 3128 4 1012 265 333 8 16 chr4 56039244 56039372 -99590748 + L1M2 LINE L1 5696 5822 -478 4 1012 204 235 0 0 chr4 56039525 56039576 -99590544 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1012 366 295 0 0 chr4 56040966 56041071 -99589049 - MER58B DNA MER1_type -8 333 229 5 1012 605 231 158 21 chr4 56042121 56042311 -99587809 + B3 SINE B2 1 216 0 5 1012 657 266 81 4 chr4 56043383 56043566 -99586554 + MER20 DNA MER1_type 18 219 0 5 1012 821 300 63 50 chr4 56043964 56044069 -99586051 - MER2 DNA MER2_type -22 323 224 5 1012 899 280 98 8 chr4 56044069 56044335 -99585785 - B4A SINE B4 -2 290 1 5 1012 821 300 63 50 chr4 56044335 56044548 -99585572 - MER2 DNA MER2_type -122 223 1 5 1012 21 57 0 0 chr4 56044962 56044997 -99585123 + AT_rich Low_complexity Low_complexity 1 35 0 5 1012 23 33 0 0 chr4 56045255 56045285 -99584835 + AT_rich Low_complexity Low_complexity 1 30 0 5 1012 426 69 0 0 chr4 56045915 56045973 -99584147 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1012 646 267 46 37 chr4 56046599 56046840 -99583280 + L1MA4 LINE L1 5451 5693 -604 5 1012 329 204 80 0 chr4 56046858 56046971 -99583149 - Lx9 LINE L1 -5 7639 7518 5 1012 231 298 10 21 chr4 56046985 56047081 -99583039 - Lx9 LINE L1 -176 7468 7374 5 1012 625 260 72 5 chr4 56047156 56047365 -99582755 + L1MA4 LINE L1 5685 5907 -393 5 1012 1785 209 54 10 chr4 56047389 56047780 -99582340 + MTD LTR MaLR 12 419 0 6 1012 471 18 0 0 chr4 56048031 56048087 -99582033 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 6 1012 441 0 0 0 chr4 56048286 56048335 -99581785 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1012 255 374 65 8 chr4 56048710 56048834 -99581286 - L2b LINE L2 -5 3370 3240 6 1012 862 282 10 0 chr4 56048956 56049158 -99580962 + ID_B1 SINE B4 1 204 -20 6 1012 246 303 15 0 chr4 56050302 56050368 -99579752 - ID4 SINE ID -13 70 4 6 1012 252 0 0 0 chr4 56050471 56050499 -99579621 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 1012 784 241 127 11 chr4 56050828 56051017 -99579103 + B3 SINE B2 1 211 -5 6 1012 389 264 21 52 chr4 56051174 56051333 -99578787 + MLT1D LTR MaLR 254 448 -57 6 1012 621 0 0 0 chr4 56051893 56051962 -99578158 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1012 339 44 0 0 chr4 56051962 56052006 -99578114 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1012 21 0 0 0 chr4 56052019 56052040 -99578080 + AT_rich Low_complexity Low_complexity 1 21 0 7 1012 33502 30 1 6 chr4 56052729 56058888 -99571232 - L1Md_A LINE L1 -2 6580 460 7 1012 216 100 32 48 chr4 56059997 56060060 -99570060 + (CAAAC)n Simple_repeat Simple_repeat 4 65 0 7 1012 183 42 0 0 chr4 56060057 56060081 -99570039 + (CACAA)n Simple_repeat Simple_repeat 4 27 0 7 1012 486 204 3 3 chr4 56060686 56060993 -99569127 + (CA)n Simple_repeat Simple_repeat 1 307 0 7 1012 336 138 17 0 chr4 56061002 56061060 -99569060 + HAL1-3A_ME LINE L1 1976 2034 -824 7 1012 411 55 54 14 chr4 56061060 56061134 -99568986 + (GGGAGA)n Simple_repeat Simple_repeat 6 82 0 7 1012 513 0 0 0 chr4 56062538 56062595 -99567525 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1012 387 0 0 0 chr4 56062595 56062637 -99567483 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1012 395 196 0 7 chr4 56062638 56062777 -99567343 + GA-rich Low_complexity Low_complexity 2 139 0 8 1012 558 146 0 0 chr4 56065463 56065573 -99564547 + (TC)n Simple_repeat Simple_repeat 2 111 0 8 1012 257 89 0 22 chr4 56065658 56065704 -99564416 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1012 608 296 34 0 chr4 56065711 56065887 -99564233 - B4A SINE B4 -6 286 105 8 1012 180 65 20 61 chr4 56066023 56066072 -99564048 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1012 302 238 100 0 chr4 56067274 56067354 -99562766 + L1MA5A LINE L1 6180 6267 -30 8 1012 642 26 0 0 chr4 56067442 56067518 -99562602 + (TA)n Simple_repeat Simple_repeat 2 77 0 8 1012 354 23 0 0 chr4 56067518 56067560 -99562560 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1012 344 373 38 9 chr4 56068837 56069048 -99561072 - MIR SINE MIR -45 217 1 8 1012 22 0 0 0 chr4 56071269 56071291 -99558829 + AT_rich Low_complexity Low_complexity 1 22 0 8 1012 309 151 0 0 chr4 56071459 56071512 -99558608 + GA-rich Low_complexity Low_complexity 2 54 0 9 1012 1073 288 58 36 chr4 56071852 56071903 -99558217 - MTE2b LTR MaLR 0 379 333 9 1012 855 271 20 106 chr4 56071903 56072308 -99557812 - ORR1D2 LTR MaLR 0 370 1 9 1012 1073 288 58 36 chr4 56072308 56072620 -99557500 - MTE2b LTR MaLR -47 332 8 9 1012 206 333 12 0 chr4 56074478 56074559 -99555561 + L3 LINE CR1 4239 4320 -169 9 1012 234 0 0 0 chr4 56074640 56074666 -99555454 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1012 276 186 0 0 chr4 56075363 56075422 -99554698 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1012 643 328 65 10 chr4 56077111 56077404 -99552716 + MLT1F-int LTR MaLR 1181 1489 0 9 1012 746 275 94 35 chr4 56077407 56077822 -99552298 + MLT1F LTR MaLR 6 521 -48 9 1012 464 301 90 52 chr4 56078293 56078637 -99551483 - ORR1E LTR MaLR 0 359 3 9 1012 218 222 82 82 chr4 56079138 56079236 -99550884 - MIR SINE MIR -12 250 153 9 1012 280 219 60 12 chr4 56079233 56079316 -99550804 + MIR SINE MIR 128 214 -48 9 1012 421 305 116 56 chr4 56079835 56080068 -99550052 - MLT1F1 LTR MaLR -16 553 307 1 1012 264 269 12 60 chr4 56080134 56080217 -99549903 - MLT1F1 LTR MaLR -372 197 119 1 1012 205 355 64 0 chr4 56080698 56080808 -99549312 - MIRb SINE MIR -120 148 32 1 1012 385 169 78 0 chr4 56081066 56081143 -99548977 - B1_Mur2 SINE Alu -1 148 66 1 1012 597 310 48 5 chr4 56081159 56081347 -99548773 - B4A SINE B4 -88 204 9 1 1012 271 246 14 0 chr4 56081903 56081972 -99548148 - MIRc SINE MIR -115 153 84 1 1012 244 375 82 82 chr4 56083044 56083582 -99546538 - LTR78 LTR ERV1 -197 1107 570 1 1012 181 361 62 0 chr4 56084046 56084143 -99545977 + MIRb SINE MIR 115 217 -51 1 1012 5937 148 1 6 chr4 56085160 56086093 -99544027 - Lx LINE L1 0 6654 5727 1 1012 892 220 105 0 chr4 56087865 56088056 -99542064 + MTD LTR MaLR 158 368 -51 1 1012 772 291 216 3 chr4 56088932 56089244 -99540876 - MTE2b LTR MaLR 0 379 1 1 1012 477 0 0 0 chr4 56089662 56089715 -99540405 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1012 207 0 0 0 chr4 56089990 56090013 -99540107 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1012 477 0 0 0 chr4 56090424 56090477 -99539643 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1012 189 0 0 0 chr4 56090477 56090498 -99539622 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1012 1167 120 6 39 chr4 56091357 56091539 -99538581 + L1_Mus3 LINE L1 6055 6230 -408 1 1012 2550 131 13 2 chr4 56091707 56092096 -99538024 + L1_Mus3 LINE L1 6236 6628 -10 1 1012 726 72 0 0 chr4 56092096 56092193 -99537927 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 1 1012 779 291 12 28 chr4 56093642 56093971 -99536149 + L1MA4 LINE L1 5593 5889 -411 1 1012 295 239 64 21 chr4 56094236 56094330 -99535790 - MIRb SINE MIR -111 157 60 1 1012 259 333 52 20 chr4 56094934 56095087 -99535033 + RMER10A LTR ERVL 266 423 -19 1 1012 450 0 0 0 chr4 56096391 56096441 -99533679 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1012 368 331 71 7 chr4 56098030 56098170 -99531950 + ORR1E LTR MaLR 1 149 -210 1 1012 1275 159 23 0 chr4 56098267 56098487 -99531633 - URR1B DNA MER1_type 0 225 1 1 1012 331 267 11 0 chr4 56098487 56098572 -99531548 + ORR1E LTR MaLR 288 373 -6 1 1013 444 165 0 0 chr4 56098821 56098936 -99531184 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 1013 319 345 42 73 chr4 56099471 56099662 -99530458 + B4 SINE B4 1 185 -107 1 1013 540 45 0 0 chr4 56099841 56099908 -99530212 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1013 992 229 5 28 chr4 56100717 56100933 -99529187 + B3 SINE B2 1 211 -5 1 1013 561 30 0 0 chr4 56102796 56102863 -99527257 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1013 448 358 6 6 chr4 56102872 56103035 -99527085 - RSINE1 SINE B4 0 165 3 1 1013 200 265 90 20 chr4 56103941 56104041 -99526079 - MIR3 SINE MIR -14 194 88 1 1013 184 270 63 0 chr4 56104988 56105051 -99525069 + MIRc SINE MIR 92 158 -110 1 1013 519 31 0 0 chr4 56105234 56105299 -99524821 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1013 549 30 0 0 chr4 56105299 56105365 -99524755 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1013 379 288 7 57 chr4 56105371 56105511 -99524609 - ID_B1 SINE B4 -12 212 80 1 1013 1163 227 153 9 chr4 56105696 56106043 -99524077 + MT2A LTR ERVL 1 397 -136 1 1013 211 318 35 12 chr4 56106579 56106665 -99523455 + MIRb SINE MIR 57 144 -124 1 1013 912 197 113 5 chr4 56106924 56107128 -99522992 + URR1A DNA MER1_type 1 226 0 1 1013 633 296 52 33 chr4 56107755 56107957 -99522163 + B4A SINE B4 1 206 -86 1 1013 1168 230 184 3 chr4 56107957 56108310 -99521810 - MTD LTR MaLR -2 417 1 1 1013 426 298 230 37 chr4 56108332 56109011 -99521109 + HAL1 LINE L1 447 1256 -1251 1 1013 284 181 72 61 chr4 56109352 56109500 -99520620 - Lx6 LINE L1 -1 7459 7364 1 1013 348 24 0 0 chr4 56109873 56109914 -99520206 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1013 233 366 28 0 chr4 56110268 56110410 -99519710 + HAL1 LINE L1 2124 2269 -238 1 1013 321 359 48 42 chr4 56111565 56111731 -99518389 + MER63A DNA AcHobo 5 171 -39 1 1013 1012 274 82 54 chr4 56111975 56112472 -99517648 - L1MA4 LINE L1 -380 5920 5410 1 1013 443 278 0 0 chr4 56112495 56112592 -99517528 - PB1D10 SINE Alu -19 98 2 1 1013 609 14 0 0 chr4 56114457 56114527 -99515593 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1013 187 267 89 0 chr4 56114941 56114986 -99515134 + MIRc SINE MIR 121 169 -99 1 1013 328 372 47 75 chr4 56116742 56117060 -99513060 - B4 SINE B4 -11 281 2 1 1013 425 355 134 26 chr4 56117465 56117696 -99512424 - MLT1J2 LTR MaLR -154 294 39 1 1013 354 341 14 7 chr4 56117740 56117879 -99512241 + L2c LINE L2 3243 3382 -5 1 1013 466 314 67 56 chr4 56118755 56118934 -99511186 - B3A SINE B2 -16 182 2 1 1013 192 301 26 60 chr4 56119808 56119944 -99510176 - L2c LINE L2 -1 3425 3293 1 1013 715 296 180 26 chr4 56119965 56120315 -99509805 - Lx8 LINE L1 -193 7280 6877 1 1013 29 28 0 0 chr4 56120695 56120731 -99509389 + AT_rich Low_complexity Low_complexity 1 36 0 1 1013 277 168 0 109 chr4 56121429 56121511 -99508609 + T-rich Low_complexity Low_complexity 58 135 0 1 1013 180 0 0 0 chr4 56121511 56121531 -99508589 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1013 277 168 0 109 chr4 56121531 56121573 -99508547 + T-rich Low_complexity Low_complexity 25 57 0 1 1013 237 33 0 0 chr4 56121573 56121603 -99508517 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1013 277 168 0 109 chr4 56121603 56121624 -99508496 + T-rich Low_complexity Low_complexity 5 24 0 1 1013 218 32 0 31 chr4 56121645 56121677 -99508443 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1013 1133 92 0 7 chr4 56122516 56122669 -99507451 + B2_Mm2 SINE B2 3 154 -41 1 1013 348 24 0 0 chr4 56122670 56122711 -99507409 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 1013 868 266 22 65 chr4 56122767 56123044 -99507076 - RMER15 LTR ERVL -5 570 306 1 1013 759 294 67 5 chr4 56124468 56124663 -99505457 - ID_B1 SINE B4 0 224 18 1 1013 1188 124 17 11 chr4 56124828 56125008 -99505112 - B2_Mm2 SINE B2 -14 181 1 1 1013 362 326 78 133 chr4 56125097 56125444 -99504676 - ORR1E LTR MaLR 0 359 32 1 1013 25 0 0 0 chr4 56127188 56127213 -99502907 + AT_rich Low_complexity Low_complexity 1 25 0 1 1013 316 27 0 0 chr4 56127735 56127772 -99502348 + HAL1-3A_ME LINE L1 1972 2008 -850 1 1013 333 0 0 0 chr4 56127772 56127809 -99502311 + (CAT)n Simple_repeat Simple_repeat 1 37 0 1 1013 1502 69 0 31 chr4 56128037 56128232 -99501888 + B2_Mm2 SINE B2 2 190 -5 1 1013 368 270 0 3 chr4 56128311 56128399 -99501721 + B3A SINE B2 2 87 -108 1 1013 631 272 86 0 chr4 56128785 56128947 -99501173 + B3A SINE B2 1 176 -22 1 1013 420 20 0 0 chr4 56128951 56129000 -99501120 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1013 1223 211 72 22 chr4 56129310 56129586 -99500534 + MTD LTR MaLR 1 290 -129 1 1013 595 311 82 38 chr4 56130204 56130495 -99499625 + MLT1D LTR MaLR 21 324 -181 1 1013 390 319 34 0 chr4 56130532 56130651 -99499469 + B1F SINE Alu 27 149 0 1 1013 228 35 0 0 chr4 56130705 56130734 -99499386 + (CAAGG)n Simple_repeat Simple_repeat 2 30 0 1 1013 371 113 16 0 chr4 56131046 56131108 -99499012 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1013 387 378 88 38 chr4 56131559 56131977 -99498143 + LTR78 LTR ERV1 866 1304 0 1 1013 190 210 0 46 chr4 56132018 56132083 -99498037 + G-rich Low_complexity Low_complexity 1 62 0 1 1013 2966 53 0 35 chr4 56132174 56132566 -99497554 - L1Md_F2 LINE L1 0 6582 6223 1 1013 241 282 14 0 chr4 56133907 56133978 -99496142 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1013 217 350 31 39 chr4 56135312 56135440 -99494680 + L2 LINE L2 2336 2462 -957 1 1013 642 275 25 6 chr4 56135545 56135706 -99494414 - MER58A DNA MER1_type -44 180 17 1 1013 441 310 136 21 chr4 56136188 56136468 -99493652 + Lx8 LINE L1 7156 7467 -6 1 1013 392 0 0 20 chr4 56137140 56137146 -99492974 + (TA)n Simple_repeat Simple_repeat 1 6 0 1 1013 555 118 0 0 chr4 56137146 56137231 -99492889 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1013 392 0 0 20 chr4 56137231 56137273 -99492847 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1013 3215 159 85 0 chr4 56138164 56138741 -99491379 + Lx5 LINE L1 4531 5156 -721 1 1013 7774 156 28 39 chr4 56138738 56140266 -99489854 + Lx5 LINE L1 5522 7034 -16 1 1013 252 0 0 0 chr4 56140266 56140294 -99489826 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1 1013 303 295 129 48 chr4 56142871 56143081 -99487039 + MIRb SINE MIR 42 268 0 1 1013 246 125 0 0 chr4 56143325 56143373 -99486747 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1013 342 0 0 0 chr4 56143755 56143793 -99486327 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1013 776 234 58 0 chr4 56143924 56144078 -99486042 + RSINE1 SINE B4 3 165 0 1 1013 2030 220 93 18 chr4 56144689 56145185 -99484935 - Lx2B LINE L1 0 7000 6468 1 1013 4418 171 45 21 chr4 56145184 56146031 -99484089 + Lx2B LINE L1 5653 6519 -481 1 1013 255 125 0 0 chr4 56146079 56146119 -99484001 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1013 330 343 73 12 chr4 56147093 56147268 -99482852 - MamGypLTR1b LTR Gypsy -8 776 598 1 1013 872 291 67 14 chr4 56147589 56147945 -99482175 - L1MA4 LINE L1 -1770 5926 5575 1 1013 443 308 53 23 chr4 56148707 56148840 -99481280 + ID_B1 SINE B4 81 217 -7 1 1013 568 350 16 5 chr4 56149044 56149231 -99480889 + ID_B1 SINE B4 27 215 -9 1 1013 304 316 0 0 chr4 56150006 56150064 -99480056 + polypurine Low_complexity Low_complexity 2 59 0 1 1013 378 57 0 0 chr4 56150064 56150117 -99480003 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1013 304 316 0 0 chr4 56150117 56150156 -99479964 + polypurine Low_complexity Low_complexity 60 98 0 2 1013 231 209 0 0 chr4 56150320 56150363 -99479757 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2 1013 441 0 0 0 chr4 56150808 56150857 -99479263 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1013 818 169 26 3 chr4 56151268 56151499 -99478621 - L1_Mur2 LINE L1 -726 5154 4766 2 1013 1336 302 11 3 chr4 56152844 56153213 -99476907 - MTE2b LTR MaLR -7 372 1 2 1013 246 128 0 0 chr4 56153449 56153488 -99476632 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 2 1013 184 30 61 0 chr4 56153828 56153861 -99476259 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1013 636 138 0 0 chr4 56154506 56154636 -99475484 + (GGA)n Simple_repeat Simple_repeat 3 132 0 2 1013 222 118 0 0 chr4 56154924 56154958 -99475162 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1013 374 100 17 0 chr4 56155914 56155974 -99474146 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 2 1013 441 0 0 0 chr4 56156568 56156617 -99473503 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1013 1012 293 35 14 chr4 56156645 56156929 -99473191 - B4 SINE B4 -1 291 2 2 1013 195 323 31 51 chr4 56156949 56157047 -99473073 - MIRb SINE MIR -141 127 32 2 1013 477 269 124 9 chr4 56157264 56157482 -99472638 + MER5C DNA MER1_type 68 310 -3 2 1013 335 0 54 18 chr4 56157530 56157586 -99472534 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1013 472 352 31 31 chr4 56157758 56158051 -99472069 - L1M3 LINE L1 -401 5770 5478 2 1013 441 0 0 0 chr4 56158285 56158334 -99471786 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1013 389 375 62 11 chr4 56159998 56160270 -99469850 + MamRep4096 DNA hAT? 1 286 -140 2 1013 242 331 35 2 chr4 56162682 56162786 -99467334 - MLT1C LTR MaLR -15 375 269 2 1013 692 217 15 8 chr4 56162874 56163004 -99467116 + ID_B1 SINE B4 87 217 -7 2 1013 421 254 62 24 chr4 56163048 56163179 -99466941 + B1F SINE Alu 12 147 -2 2 1013 330 301 14 0 chr4 56163186 56163259 -99466861 + ID4_ SINE ID 6 79 -4 2 1013 200 173 0 37 chr4 56163259 56163313 -99466807 + (TAA)n Simple_repeat Simple_repeat 1 52 0 2 1013 293 323 30 30 chr4 56163321 56163455 -99466665 - MLT1C LTR MaLR -331 136 3 2 1013 383 291 118 95 chr4 56164492 56164807 -99465313 - MLT1D LTR MaLR -33 472 151 2 1013 342 201 256 122 chr4 56164871 56165035 -99465085 + B4A SINE B4 87 272 -20 2 1013 287 250 88 33 chr4 56165151 56165242 -99464878 - MLT1D LTR MaLR -388 117 22 2 1013 278 270 126 8 chr4 56165922 56166049 -99464071 + Lx7 LINE L1 7263 7404 -292 2 1013 315 236 97 8 chr4 56167327 56167451 -99462669 - MER53 DNA hAT -40 153 19 2 1013 405 0 0 0 chr4 56168634 56168679 -99461441 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1013 498 266 106 6 chr4 56168964 56169134 -99460986 + MER2 DNA MER2_type 98 284 -61 2 1013 190 338 66 26 chr4 56169258 56169334 -99460786 - L2c LINE L2 -36 3351 3273 2 1013 29 28 0 0 chr4 56169357 56169393 -99460727 + AT_rich Low_complexity Low_complexity 1 36 0 2 1013 549 0 0 0 chr4 56169607 56169668 -99460452 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 2 1013 417 39 0 0 chr4 56170941 56170992 -99459128 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1013 329 189 0 10 chr4 56171429 56171525 -99458595 + CT-rich Low_complexity Low_complexity 2 96 0 2 1013 491 105 0 59 chr4 56171668 56171769 -99458351 - L1Md_F3 LINE L1 0 6584 6490 2 1013 975 195 9 5 chr4 56172789 56172999 -99457121 - B3A SINE B2 -6 210 1 2 1013 2064 90 23 60 chr4 56174702 56175094 -99455026 + RLTR10A LTR ERVK 1 390 0 2 1013 999 252 32 25 chr4 56175096 56175381 -99454739 + B4 SINE B4 2 288 -4 2 1013 466 191 15 0 chr4 56175417 56175553 -99454567 + (CA)n Simple_repeat Simple_repeat 1 138 0 2 1013 461 222 22 0 chr4 56176272 56176362 -99453758 + B1_Mur1 SINE Alu 20 111 -38 2 1013 26 0 0 0 chr4 56176469 56176495 -99453625 + AT_rich Low_complexity Low_complexity 1 26 0 2 1013 342 355 107 24 chr4 56176498 56176703 -99453417 - L1M5 LINE L1 -421 5819 5598 2 1013 213 39 0 0 chr4 56176710 56176736 -99453384 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1013 21 36 0 0 chr4 56176783 56176811 -99453309 + AT_rich Low_complexity Low_complexity 1 28 0 2 1013 184 308 15 0 chr4 56176973 56177038 -99453082 + MIR SINE MIR 133 198 -64 2 1013 542 254 23 8 chr4 56177311 56177442 -99452678 + B1F SINE Alu 10 142 -7 2 1013 232 154 0 0 chr4 56177530 56177569 -99452551 + G-rich Low_complexity Low_complexity 4 42 0 2 1013 487 43 29 0 chr4 56177569 56177639 -99452481 + (GGA)n Simple_repeat Simple_repeat 1 72 0 2 1013 398 207 44 7 chr4 56177623 56177759 -99452361 + GA-rich Low_complexity Low_complexity 4 144 0 2 1013 473 319 7 0 chr4 56177893 56178034 -99452086 + B1F SINE Alu 3 144 -5 2 1013 297 225 0 0 chr4 56178034 56178123 -99451997 + GA-rich Low_complexity Low_complexity 2 90 0 2 1013 1324 270 57 32 chr4 56178581 56178983 -99451137 + MTD LTR MaLR 8 419 0 2 1013 214 125 20 20 chr4 56179144 56179193 -99450927 + CT-rich Low_complexity Low_complexity 2 50 0 2 1013 341 306 20 46 chr4 56182391 56182542 -99447578 - MLT1A1 LTR MaLR -6 402 256 2 1013 279 0 0 0 chr4 56183450 56183481 -99446639 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1013 629 296 73 15 chr4 56183484 56183745 -99446375 - B4A SINE B4 -15 277 2 2 1013 262 315 247 0 chr4 56184167 56184329 -99445791 + MIRc SINE MIR 47 248 -20 2 1013 268 315 33 40 chr4 56185129 56185281 -99444839 + MER63B DNA AcHobo 278 428 -8 2 1013 203 289 39 26 chr4 56186098 56186176 -99443944 - MIRb SINE MIR -70 198 120 2 1013 1214 95 6 0 chr4 56186289 56186468 -99443652 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1013 276 376 11 21 chr4 56186544 56186630 -99443490 + Tigger7 DNA MER2_type 143 227 -2264 2 1013 1150 276 83 58 chr4 56186630 56186991 -99443129 - MTE2a LTR MaLR 0 379 10 2 1013 254 300 152 15 chr4 56186988 56187085 -99443035 + Tigger7 DNA MER2_type 225 339 -2152 2 1013 1227 284 37 43 chr4 56187085 56187435 -99442685 + ORR1E LTR MaLR 1 348 -11 2 1013 200 86 0 28 chr4 56188039 56188075 -99442045 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1013 1048 99 0 12 chr4 56189805 56189969 -99440151 - L1Md_F2 LINE L1 -12 6570 6409 2 1013 216 370 49 35 chr4 56190758 56190901 -99439219 + L2 LINE L2 2704 2848 -571 2 1013 1352 256 58 24 chr4 56190928 56191319 -99438801 + MTD LTR MaLR 5 405 -14 2 1013 256 308 195 11 chr4 56191637 56191811 -99438309 + MIR SINE MIR 2 207 -55 2 1013 189 0 0 0 chr4 56192691 56192712 -99437408 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1013 323 192 51 0 chr4 56193704 56193782 -99436338 - L1MA8 LINE L1 -51 6240 6159 2 1013 263 263 78 44 chr4 56194135 56194239 -99435881 - MTE2b LTR MaLR 0 379 272 2 1013 486 75 0 0 chr4 56194484 56194551 -99435569 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1013 255 191 0 0 chr4 56195040 56195087 -99435033 - B2_Mm2 SINE B2 -148 47 1 2 1013 603 288 73 18 chr4 56196612 56196955 -99433165 + L1M3 LINE L1 4905 5266 -874 2 1013 298 274 26 78 chr4 56197014 56197129 -99432991 + B1F SINE Alu 5 113 -36 2 1013 1018 161 5 51 chr4 56197244 56197440 -99432680 + ORR1D1 LTR MaLR 1 187 -187 2 1013 311 150 0 16 chr4 56197440 56197501 -99432619 + C-rich Low_complexity Low_complexity 5 64 0 2 1013 1034 200 19 14 chr4 56197502 56197710 -99432410 + ORR1D1 LTR MaLR 166 374 0 2 1013 258 250 44 25 chr4 56197901 56198061 -99432059 + (TTATA)n Simple_repeat Simple_repeat 1 163 0 2 1013 549 346 102 64 chr4 56198335 56198786 -99431334 + MLT1L LTR MaLR 47 514 -96 2 1013 1258 297 88 25 chr4 56199137 56199697 -99430423 + MER97c DNA MER1_type? 74 668 -422 2 1013 981 271 9 0 chr4 56199704 56199918 -99430202 - B3 SINE B2 0 216 1 2 1013 459 0 0 0 chr4 56201869 56201920 -99428200 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1013 315 0 0 0 chr4 56201920 56201954 -99428166 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1013 240 277 0 0 chr4 56202421 56202515 -99427605 + GA-rich Low_complexity Low_complexity 3 96 0 2 1013 348 161 0 0 chr4 56203278 56203340 -99426780 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1013 375 311 26 105 chr4 56203495 56203800 -99426320 + B4A SINE B4 2 282 -10 2 1013 233 197 14 0 chr4 56203809 56203880 -99426240 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1013 486 0 0 0 chr4 56203880 56203934 -99426186 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1013 1316 218 78 41 chr4 56204490 56204835 -99425285 + MTD LTR MaLR 48 405 -14 2 1013 215 300 0 0 chr4 56204994 56205044 -99425076 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2 1013 322 281 22 45 chr4 56205120 56205254 -99424866 - MIRb SINE MIR -46 222 92 2 1013 213 65 0 0 chr4 56205388 56205419 -99424701 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1013 242 369 10 10 chr4 56206180 56206284 -99423836 + MER117 DNA MER1_type 37 140 -57 2 1013 326 259 22 11 chr4 56206403 56206493 -99423627 + MLT1A LTR MaLR 71 161 -213 2 1013 198 0 0 0 chr4 56206571 56206593 -99423527 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1013 560 258 24 0 chr4 56206669 56206793 -99423327 + RSINE1 SINE B4 3 129 -36 2 1013 207 0 0 0 chr4 56206981 56207004 -99423116 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1013 495 0 0 0 chr4 56207176 56207231 -99422889 + (CATA)n Simple_repeat Simple_repeat 1 55 0 2 1013 180 0 0 0 chr4 56207369 56207389 -99422731 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1013 1307 242 59 54 chr4 56207764 56208118 -99422002 - ORR1D2 LTR MaLR -12 358 3 3 1013 23 33 0 0 chr4 56208441 56208471 -99421649 + AT_rich Low_complexity Low_complexity 1 30 0 3 1013 279 322 0 75 chr4 56209497 56209511 -99420609 + MT2B2 LTR ERVL 152 158 -426 3 1013 384 290 25 0 chr4 56209511 56209601 -99420519 + B1F1 SINE Alu 2 93 -27 3 1013 2932 147 23 43 chr4 56209601 56210163 -99419957 + Lx5 LINE L1 5869 6419 -631 3 1013 522 0 0 0 chr4 56211069 56211127 -99418993 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1013 225 0 0 0 chr4 56212488 56212513 -99417607 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1013 394 360 0 17 chr4 56212527 56212643 -99417477 - PB1D10 SINE Alu -2 115 2 3 1013 1104 305 32 66 chr4 56213108 56213741 -99416379 - Lx9 LINE L1 -76 7568 6958 3 1013 243 325 25 0 chr4 56213854 56213934 -99416186 + ID4_ SINE ID 2 83 0 3 1013 492 240 93 7 chr4 56213927 56214078 -99416042 + MER58B DNA MER1_type 100 263 -78 3 1013 870 231 20 5 chr4 56214295 56214491 -99415629 - ORR1C1 LTR MaLR -13 365 167 3 1013 306 0 0 0 chr4 56214491 56214525 -99415595 + (GGA)n Simple_repeat Simple_repeat 2 35 0 3 1013 624 183 6 139 chr4 56214525 56214542 -99415578 - ORR1C1 LTR MaLR -190 194 177 3 1013 845 88 7 0 chr4 56214542 56214679 -99415441 + (GA)n Simple_repeat Simple_repeat 1 138 0 3 1013 624 183 6 139 chr4 56214679 56214826 -99415294 - ORR1C1 LTR MaLR -208 176 52 3 1013 235 297 93 13 chr4 56214864 56214939 -99415181 + B4A SINE B4 211 291 -1 3 1013 647 331 133 12 chr4 56215245 56215832 -99414288 - Lx8 LINE L1 -150 7323 6666 3 1013 1175 293 52 42 chr4 56215991 56216059 -99414061 + Lx8 LINE L1 6116 6189 -1284 3 1013 342 0 0 0 chr4 56216059 56216097 -99414023 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1013 1175 293 52 42 chr4 56216097 56216548 -99413572 + Lx8 LINE L1 6190 6640 -833 3 1013 693 291 46 119 chr4 56216549 56216919 -99413201 - MLT1D LTR MaLR -160 345 3 3 1013 648 26 0 0 chr4 56216938 56217016 -99413104 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1013 1543 248 35 3 chr4 56217039 56217383 -99412737 - ORR1D2 LTR MaLR -7 363 9 3 1013 1636 167 73 25 chr4 56217468 56217825 -99412295 - ORR1D1 LTR MaLR 0 374 1 3 1013 310 307 24 3 chr4 56217875 56218010 -99412110 + MIRc SINE MIR 6 145 -131 3 1013 231 88 0 0 chr4 56219095 56219129 -99410991 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1013 260 188 15 15 chr4 56219163 56219228 -99410892 - L1MA4 LINE L1 -361 5939 5875 3 1013 383 236 66 26 chr4 56219253 56219537 -99410583 + L1M2 LINE L1 5123 5432 -865 3 1013 271 327 84 98 chr4 56220686 56220971 -99409149 + L2c LINE L2 3103 3383 -4 3 1013 217 185 56 0 chr4 56221003 56221057 -99409063 + (TTAAA)n Simple_repeat Simple_repeat 4 60 0 3 1013 215 308 29 9 chr4 56221436 56221541 -99408579 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 3 1013 631 250 36 61 chr4 56221885 56222081 -99408039 + B3A SINE B2 6 196 -2 3 1013 1336 254 67 45 chr4 56222581 56222644 -99407476 - RCHARR1 DNA MER1_type 0 974 909 3 1013 342 0 0 0 chr4 56222644 56222682 -99407438 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1013 1336 254 67 45 chr4 56222682 56222782 -99407338 - RCHARR1 DNA MER1_type -66 908 821 3 1013 7978 5 0 0 chr4 56222782 56223648 -99406472 + L1Md_T LINE L1 5717 6582 0 3 1013 1336 254 67 45 chr4 56223648 56223974 -99406146 - RCHARR1 DNA MER1_type -154 820 473 3 1013 385 240 86 55 chr4 56223977 56224105 -99406015 - RMER1B Other Other -12 1054 923 3 1013 180 219 0 0 chr4 56224105 56224146 -99405974 + GA-rich Low_complexity Low_complexity 4 44 0 3 1013 270 183 102 51 chr4 56224150 56224248 -99405872 - RMER1B Other Other -112 954 852 3 1013 292 264 209 0 chr4 56224255 56224418 -99405702 - RCHARR1 DNA MER1_type -476 498 302 3 1013 189 301 37 37 chr4 56224654 56224781 -99405339 + MIRc SINE MIR 26 152 -116 3 1013 180 350 50 10 chr4 56228271 56228372 -99401748 + MIRb SINE MIR 32 136 -132 3 126 379 314 0 0 chr4 56229799 56229917 -99400203 + MIRb SINE MIR 66 183 -85 3 1014 201 267 176 10 chr4 56230102 56230204 -99399916 + MIRb SINE MIR 13 131 -137 3 1014 349 331 16 38 chr4 56230439 56230624 -99399496 + B3A SINE B2 2 182 -16 3 1014 209 140 0 23 chr4 56231250 56231294 -99398826 + CT-rich Low_complexity Low_complexity 1 43 0 3 1014 417 39 0 0 chr4 56231745 56231796 -99398324 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 3 1014 226 296 14 40 chr4 56232672 56232746 -99397374 + MER5A DNA MER1_type 100 171 -18 3 1014 307 85 0 21 chr4 56232777 56232825 -99397295 + HAL1-3A_ME LINE L1 1966 2012 -846 3 1014 345 174 0 0 chr4 56232825 56232894 -99397226 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1014 185 86 57 0 chr4 56235235 56235270 -99394850 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1014 2695 49 61 0 chr4 56235687 56236031 -99394089 + L1Md_F2 LINE L1 6217 6581 -1 3 1014 672 291 65 14 chr4 56236331 56236547 -99393573 - B4 SINE B4 -42 250 24 3 1014 234 331 66 42 chr4 56236631 56236798 -99393322 + MER63A DNA AcHobo 1 171 -39 3 1014 230 0 0 32 chr4 56237773 56237804 -99392316 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1014 365 315 114 0 chr4 56238265 56238414 -99391706 - MER82 DNA MER2_type -2 651 486 3 1014 390 42 0 0 chr4 56238545 56238593 -99391527 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1014 392 286 53 58 chr4 56238744 56238915 -99391205 - MER82 DNA MER2_type -321 332 163 3 1014 241 289 155 0 chr4 56238921 56239018 -99391102 - Tigger5 DNA MER2_type 0 2406 2295 3 1014 564 258 109 12 chr4 56239054 56239219 -99390901 - Tigger5 DNA MER2_type -2224 182 2 3 1014 307 330 60 27 chr4 56239371 56239555 -99390565 + MIRb SINE MIR 55 244 -24 3 1014 389 188 0 0 chr4 56240093 56240157 -99389963 + B1_Mus1 SINE Alu 5 68 -80 3 1014 1154 75 0 0 chr4 56240303 56240441 -99389679 + B1_Mm SINE Alu 1 138 -9 3 1014 495 0 0 0 chr4 56240441 56240496 -99389624 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1014 1074 107 0 0 chr4 56240526 56240685 -99389435 + (GGAAA)n Simple_repeat Simple_repeat 3 161 0 3 1014 272 83 21 0 chr4 56244074 56244122 -99385998 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1014 397 349 57 39 chr4 56244442 56245100 -99385020 - L2a LINE L2 0 3426 2757 3 1014 615 291 104 37 chr4 56246822 56247090 -99383030 + B4 SINE B4 1 286 -6 3 1014 441 0 0 0 chr4 56247385 56247434 -99382686 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1014 231 314 58 10 chr4 56247632 56247735 -99382385 + LTR33 LTR ERVL 47 154 -361 3 1014 245 263 18 0 chr4 56248983 56249040 -99381080 - ID_B1 SINE B4 -98 126 69 3 1014 582 261 59 18 chr4 56249494 56249716 -99380404 + L1MA4A LINE L1 5702 5932 -371 3 1014 824 126 7 0 chr4 56250411 56250562 -99379558 + (TC)n Simple_repeat Simple_repeat 2 153 0 3 1014 295 357 105 31 chr4 56250964 56251126 -99378994 + Tigger5 DNA MER2_type 40 213 -2193 3 1014 237 331 48 48 chr4 56251424 56251611 -99378509 - L2c LINE L2 -223 3164 2978 3 1014 186 40 0 0 chr4 56252613 56252629 -99377491 + (TG)n Simple_repeat Simple_repeat 1 16 0 3 1014 312 27 0 0 chr4 56252629 56252666 -99377454 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 3 1014 186 40 0 0 chr4 56252666 56252674 -99377446 + (TG)n Simple_repeat Simple_repeat 1 8 0 3 1014 411 21 0 0 chr4 56253150 56253198 -99376922 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 3 1014 354 23 0 0 chr4 56253354 56253397 -99376723 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1014 215 191 43 0 chr4 56253870 56253917 -99376203 - B1F SINE Alu -7 142 94 3 1014 557 173 0 19 chr4 56254094 56254200 -99375920 - BC1_Mm scRNA scRNA -48 104 1 3 1014 5744 64 4 0 chr4 56254293 56255009 -99375111 - L1_Mus2 LINE L1 -3 6563 5845 3 1014 3252 82 2 0 chr4 56255009 56255426 -99374694 + L1_Mus2 LINE L1 5413 5830 -53 3 1014 273 173 16 5 chr4 56256070 56256147 -99373973 - MIR SINE MIR -143 133 55 3 1014 473 289 80 25 chr4 56257115 56257278 -99372842 + B4A SINE B4 4 175 -117 3 1014 371 21 21 0 chr4 56257379 56257427 -99372693 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1014 307 262 63 36 chr4 56257562 56257673 -99372447 - PB1D10 SINE Alu -1 116 3 3 1014 355 293 0 0 chr4 56258555 56258637 -99371483 + ID4_ SINE ID 2 83 0 3 1014 231 291 35 0 chr4 56258641 56258727 -99371393 + GA-rich Low_complexity Low_complexity 2 90 0 3 1014 496 332 126 23 chr4 56258727 56259115 -99371005 + MLT1D LTR MaLR 78 505 0 3 1014 225 301 123 0 chr4 56259469 56259542 -99370578 - PB1D10 SINE Alu -10 107 26 3 1014 194 0 39 0 chr4 56259654 56259680 -99370440 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 3 1014 501 254 76 102 chr4 56260167 56260337 -99369783 + B2_Mm2 SINE B2 1 166 -29 3 1014 360 0 0 0 chr4 56260337 56260377 -99369743 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1014 501 254 76 102 chr4 56260377 56260403 -99369717 + B2_Mm2 SINE B2 167 192 -3 3 1014 417 20 0 0 chr4 56261030 56261080 -99369040 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1014 437 254 168 22 chr4 56262040 56262177 -99367943 - RSINE1 SINE B4 -7 158 2 3 1014 561 246 19 109 chr4 56263321 56263490 -99366630 + B3A SINE B2 2 155 -43 3 1014 441 0 0 0 chr4 56263490 56263539 -99366581 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1014 561 246 19 109 chr4 56263539 56263579 -99366541 + B3A SINE B2 156 192 -6 3 1014 429 258 58 8 chr4 56263786 56263907 -99366213 + MLT1B LTR MaLR 35 161 -229 3 1014 327 296 38 147 chr4 56264033 56264207 -99365913 + MLT1B LTR MaLR 155 308 -82 3 1014 432 55 0 0 chr4 56264207 56264262 -99365858 + (CTTG)n Simple_repeat Simple_repeat 1 55 0 3 1014 511 259 0 0 chr4 56264268 56264376 -99365744 - PB1D10 SINE Alu -9 108 1 3 1014 327 296 38 147 chr4 56264376 56264459 -99365661 + MLT1B LTR MaLR 309 390 0 3 1014 324 0 0 0 chr4 56265150 56265186 -99364934 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1014 630 126 0 0 chr4 56266034 56266137 -99363983 + (CA)n Simple_repeat Simple_repeat 1 103 0 3 1014 705 267 46 49 chr4 56266240 56266606 -99363514 + L1ME2 LINE L1 5570 5934 -230 3 1014 1348 209 0 4 chr4 56266626 56266880 -99363240 + Lx9 LINE L1 6622 6874 -770 3 1014 356 271 122 0 chr4 56266950 56267057 -99363063 - B1F SINE Alu -29 120 1 3 1014 319 258 138 24 chr4 56268202 56268325 -99361795 + MIR SINE MIR 16 152 -110 3 1014 307 311 95 48 chr4 56268908 56269097 -99361023 - MER20 DNA MER1_type -4 215 18 4 1014 399 250 49 92 chr4 56269566 56269751 -99360369 - B2_Mm2 SINE B2 -11 184 8 4 1014 901 262 156 30 chr4 56270326 56270967 -99359153 - L1MA7 LINE L1 0 6291 5570 4 1014 413 255 161 39 chr4 56271640 56271795 -99358325 + B4 SINE B4 7 180 -112 4 1014 285 29 0 0 chr4 56271863 56271897 -99358223 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1014 621 0 0 0 chr4 56271897 56271965 -99358155 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1014 185 34 0 106 chr4 56272349 56272415 -99357705 + (CCCCCT)n Simple_repeat Simple_repeat 2 60 0 4 1014 1106 176 8 51 chr4 56273052 56273286 -99356834 + URR1A DNA MER1_type 3 226 0 4 1014 371 302 9 9 chr4 56274673 56274780 -99355340 - RSINE1 SINE B4 -29 136 30 4 1014 753 12 0 0 chr4 56275199 56275285 -99354835 + (TC)n Simple_repeat Simple_repeat 2 87 0 4 1014 331 276 86 0 chr4 56275822 56275927 -99354193 - PB1D7 SINE Alu -1 119 6 4 1014 536 253 63 31 chr4 56276054 56276213 -99353907 + RSINE1 SINE B4 2 165 0 4 1014 601 287 37 30 chr4 56276768 56277073 -99353047 + MER57C2 LTR ERV1 81 434 0 4 1014 186 341 56 22 chr4 56277744 56277834 -99352286 - MIRb SINE MIR -154 114 22 4 1014 442 262 112 38 chr4 56280640 56280953 -99349167 + HAL1 LINE L1 1427 1762 -745 4 1014 1060 277 65 17 chr4 56281002 56281292 -99348828 + ORR1D2 LTR MaLR 67 370 0 4 1014 384 193 12 0 chr4 56281301 56281384 -99348736 + L1MB1 LINE L1 5891 5974 -215 4 1014 735 215 9 91 chr4 56281395 56281684 -99348436 - Lx5 LINE L1 -14 7036 6702 4 1014 245 191 29 14 chr4 56281746 56281815 -99348305 + A-rich Low_complexity Low_complexity 5 74 0 4 1014 432 0 0 0 chr4 56281825 56281873 -99348247 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1014 587 279 7 0 chr4 56281886 56282033 -99348087 - Lx7 LINE L1 -388 7308 7161 4 1014 292 293 192 16 chr4 56282033 56282158 -99347962 - B3 SINE B2 -5 211 65 4 1014 253 299 288 14 chr4 56282392 56282527 -99347593 + ID_B1 SINE B4 16 187 -37 4 1014 199 348 0 28 chr4 56282527 56282598 -99347522 - MIRb SINE MIR -149 119 51 4 1014 219 173 0 0 chr4 56283217 56283269 -99346851 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1014 590 217 13 38 chr4 56283413 56283571 -99346549 + RLTR28 LTR ERVL 368 521 -3 4 1014 269 309 14 109 chr4 56285307 56285445 -99344675 - LTR48 LTR ERV1 -659 128 4 4 1014 488 274 40 8 chr4 56285749 56285874 -99344246 + RSINE1 SINE B4 2 130 -35 4 1014 315 0 0 0 chr4 56285884 56285919 -99344201 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1014 943 249 92 60 chr4 56286818 56287199 -99342921 - Charlie7 DNA MER1_type -419 2193 1801 4 1014 185 323 116 21 chr4 56287396 56287491 -99342629 - L2b LINE L2 -3 3372 3269 4 1014 677 164 6 49 chr4 56287698 56288204 -99341916 + (TG)n Simple_repeat Simple_repeat 1 484 0 4 1014 21 0 0 0 chr4 56288336 56288357 -99341763 + AT_rich Low_complexity Low_complexity 1 21 0 4 1014 329 349 46 7 chr4 56288753 56288906 -99341214 + MIR SINE MIR 76 234 -28 4 1014 327 279 0 25 chr4 56289476 56289557 -99340563 + B3A SINE B2 4 82 -116 4 1014 814 223 55 9 chr4 56289740 56289957 -99340163 + Lx7 LINE L1 7102 7328 -368 4 1014 251 288 0 0 chr4 56289952 56290025 -99340095 - L1M2 LINE L1 -1311 4832 4760 4 1014 1125 145 120 0 chr4 56291628 56291828 -99338292 + URR1A DNA MER1_type 3 226 0 4 1014 783 141 0 0 chr4 56291926 56292195 -99337925 + (TC)n Simple_repeat Simple_repeat 1 269 0 4 1014 279 0 0 0 chr4 56292197 56292228 -99337892 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1014 225 310 130 0 chr4 56293092 56293192 -99336928 + MER3 DNA MER1_type 71 183 -26 4 1014 525 302 26 13 chr4 56293760 56293911 -99336209 + RSINE1 SINE B4 3 155 -10 4 1014 591 34 33 11 chr4 56293926 56294016 -99336104 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 4 1014 410 214 34 59 chr4 56294707 56294826 -99335294 + MIRm SINE MIR 22 137 -139 4 1014 412 325 11 112 chr4 56295336 56295710 -99334410 + L1M5 LINE L1 4104 4439 -1707 4 1014 400 325 48 19 chr4 56295890 56296160 -99333960 + L1MB5 LINE L1 5888 6165 -9 4 1014 2128 105 40 12 chr4 56296196 56296525 -99333595 + Lx3B LINE L1 6634 6971 -2 4 1014 640 164 26 23 chr4 56296547 56296873 -99333247 + GA-rich Low_complexity Low_complexity 1 326 0 4 1014 199 383 30 23 chr4 56297933 56298064 -99332056 - L2c LINE L2 0 3387 3256 4 1014 30 27 0 0 chr4 56298569 56298606 -99331514 + AT_rich Low_complexity Low_complexity 1 37 0 4 1014 249 330 25 59 chr4 56299496 56299615 -99330505 + L2a LINE L2 3312 3426 0 4 1014 329 59 0 0 chr4 56299694 56299745 -99330375 + L1_Mus1 LINE L1 6517 6567 0 4 1014 1621 208 171 38 chr4 56301101 56301575 -99328545 - RLTR20B1 LTR ERVK 0 563 27 4 1014 195 42 0 0 chr4 56302643 56302667 -99327453 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1014 23 0 0 0 chr4 56303450 56303473 -99326647 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 1050 117 0 0 chr4 56303473 56303636 -99326484 + L1_Mur2 LINE L1 5283 5445 -432 4 1014 719 213 5 152 chr4 56303950 56304141 -99325979 + B3 SINE B2 35 211 -5 4 1014 255 301 0 0 chr4 56305233 56305316 -99324804 + L1MC3 LINE L1 7315 7397 -388 4 1014 320 382 18 0 chr4 56305711 56305821 -99324299 + B4A SINE B4 3 114 -178 4 1014 261 0 0 0 chr4 56305887 56305916 -99324204 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1014 976 141 11 0 chr4 56306340 56306517 -99323603 + CT-rich Low_complexity Low_complexity 1 179 0 4 1014 1242 35 11 23 chr4 56306520 56306697 -99323423 + (TCTCCC)n Simple_repeat Simple_repeat 3 177 0 4 1014 180 355 22 11 chr4 56307581 56307672 -99322448 - MIR3 SINE MIR -11 197 106 4 1014 221 367 43 80 chr4 56307976 56308139 -99321981 + MIR3 SINE MIR 44 200 -8 4 1014 1101 215 5 0 chr4 56308205 56308405 -99321715 + B3 SINE B2 1 201 -15 4 1014 531 0 0 0 chr4 56308412 56308471 -99321649 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1014 903 282 46 94 chr4 56308528 56308900 -99321220 + MLT1A0 LTR MaLR 6 359 -6 4 1014 209 200 0 0 chr4 56309278 56309328 -99320792 + T-rich Low_complexity Low_complexity 1 50 0 4 1014 496 318 95 21 chr4 56309619 56309902 -99320218 + B4 SINE B4 2 287 -5 4 1014 281 0 82 0 chr4 56311065 56311114 -99319006 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 1014 213 154 0 0 chr4 56311221 56311260 -99318860 + T-rich Low_complexity Low_complexity 1 39 0 4 1014 198 0 0 0 chr4 56312761 56312783 -99317337 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1014 8576 11 0 0 chr4 56312894 56314467 -99315653 - L1Md_T LINE L1 0 6582 5010 4 1014 300 262 53 53 chr4 56315486 56315619 -99314501 - L1M5 LINE L1 -430 5743 5611 4 1014 539 196 0 0 chr4 56315989 56316081 -99314039 + B3 SINE B2 1 92 -124 4 1014 354 98 0 0 chr4 56316532 56316583 -99313537 + (TCTCCC)n Simple_repeat Simple_repeat 1 51 0 4 1014 1223 62 6 0 chr4 56316583 56316761 -99313359 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1014 180 278 40 40 chr4 56318666 56318741 -99311379 - MIR SINE MIR -63 145 71 4 1014 287 301 103 70 chr4 56318890 56319104 -99311016 + MLT1F LTR MaLR 27 247 -301 4 1014 2288 69 50 6 chr4 56319458 56319777 -99310343 + L1Md_F2 LINE L1 6238 6570 -12 4 1014 458 299 7 40 chr4 56320830 56320980 -99309140 - MER5A1 DNA MER1_type -5 161 17 4 1014 257 263 77 69 chr4 56320998 56321231 -99308889 + L1MA6 LINE L1 6022 6256 -44 4 1014 377 324 115 42 chr4 56321627 56321914 -99308206 - MER21B LTR ERV1 -115 748 441 4 1014 340 256 26 0 chr4 56322226 56322304 -99307816 - MER21B LTR ERV1 -775 88 9 4 1014 1515 260 75 17 chr4 56323192 56323850 -99306270 + Lx6 LINE L1 6455 7433 -27 4 1014 489 315 68 34 chr4 56324415 56324622 -99305498 + MLT1J2 LTR MaLR 1 214 -234 4 1014 23 0 0 0 chr4 56325251 56325274 -99304846 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 23 0 0 0 chr4 56325362 56325385 -99304735 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 526 300 117 52 chr4 56325551 56326362 -99303758 + L1M4 LINE L1 4424 5374 -772 4 1014 228 258 120 40 chr4 56326469 56326594 -99303526 + L1MD LINE L1 5484 5618 -741 4 1014 339 336 77 26 chr4 56327260 56327340 -99302780 - B4A SINE B4 -6 286 200 4 1014 627 14 0 0 chr4 56327340 56327412 -99302708 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 4 1014 339 336 77 26 chr4 56327412 56327603 -99302517 - B4A SINE B4 -93 199 1 4 1014 28 86 0 0 chr4 56327866 56327936 -99302184 + AT_rich Low_complexity Low_complexity 1 70 0 4 1014 23 0 0 0 chr4 56328359 56328382 -99301738 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 212 346 99 31 chr4 56328451 56328612 -99301508 + MIRb SINE MIR 88 259 -9 4 1014 245 250 39 59 chr4 56328729 56328831 -99301289 - MER103 DNA DNA -4 162 63 4 1014 248 258 168 58 chr4 56330057 56330283 -99299837 + L1ME5 LINE L1 5819 6069 -125 4 1014 488 280 128 44 chr4 56331279 56331488 -99298632 + B4 SINE B4 4 233 -59 4 1014 581 72 12 0 chr4 56331488 56331571 -99298549 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 4 1014 488 280 128 44 chr4 56331571 56331611 -99298509 + B4 SINE B4 234 273 -19 4 1014 306 87 0 0 chr4 56331619 56331665 -99298455 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1014 239 0 0 31 chr4 56331699 56331731 -99298389 + (CTAAA)n Simple_repeat Simple_repeat 4 34 0 4 1014 205 391 48 65 chr4 56331753 56331939 -99298181 + MIR3 SINE MIR 3 185 -23 5 1014 240 35 0 0 chr4 56333082 56333111 -99297009 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1014 228 185 0 18 chr4 56333811 56333866 -99296254 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 5 1014 803 302 86 53 chr4 56333929 56334566 -99295554 + L1MC4 LINE L1 7330 7987 -55 5 1014 326 325 94 52 chr4 56334731 56335304 -99294816 + L1MC4 LINE L1 7315 8012 -30 5 1014 25 65 0 0 chr4 56335373 56335419 -99294701 + AT_rich Low_complexity Low_complexity 1 46 0 5 1014 1054 130 122 20 chr4 56335766 56335970 -99294150 - URR1A DNA MER1_type 0 226 2 5 1014 416 304 35 44 chr4 56336100 56336303 -99293817 - Tigger6b DNA MER2_type -1309 288 88 5 1014 350 305 53 38 chr4 56336650 56336783 -99293337 + Helitron1Nb_Mam RC Helitron 23 157 -959 5 1014 776 81 39 28 chr4 56337757 56337935 -99292185 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1014 1386 258 25 61 chr4 56338685 56339077 -99291043 - MTEa LTR MaLR 0 379 2 5 1014 2433 211 61 18 chr4 56339851 56340406 -99289714 - Lx5 LINE L1 -132 6918 6340 5 1014 8424 122 9 45 chr4 56340411 56342023 -99288097 + L1_Mur2 LINE L1 2519 4071 -1806 5 1014 1144 25 31 0 chr4 56342041 56342201 -99287919 + (TGGA)n Simple_repeat Simple_repeat 1 165 0 5 1014 216 0 0 0 chr4 56342625 56342649 -99287471 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 5 1014 717 118 0 0 chr4 56342995 56343105 -99287015 + (TG)n Simple_repeat Simple_repeat 2 111 0 5 1014 225 276 161 0 chr4 56343143 56343230 -99286890 - B3A SINE B2 -61 137 37 5 1014 503 222 127 0 chr4 56343465 56343591 -99286529 - RSINE1 SINE B4 -21 144 3 5 1014 477 0 0 0 chr4 56344636 56344689 -99285431 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1014 522 0 0 0 chr4 56344689 56344746 -99285374 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 5 1014 571 233 58 8 chr4 56345115 56345236 -99284884 + B4A SINE B4 13 139 -153 5 1014 236 242 81 0 chr4 56345182 56345244 -99284876 + AluF_3 SINE Alu 137 203 -108 5 1014 456 163 30 15 chr4 56345313 56345444 -99284676 + (CA)n Simple_repeat Simple_repeat 1 133 0 5 1014 240 35 0 0 chr4 56345482 56345511 -99284609 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1014 25 0 0 0 chr4 56345545 56345570 -99284550 + AT_rich Low_complexity Low_complexity 1 25 0 5 1014 502 321 26 47 chr4 56346741 56346973 -99283147 + MER121 Unknown Unknown 120 346 -66 5 1014 303 278 40 4 chr4 56347480 56347592 -99282528 - LTR50 LTR ERVL -2 793 645 5 1014 541 156 56 0 chr4 56348109 56348199 -99281921 - RLTR28 LTR ERVL -424 100 6 5 1014 441 0 0 0 chr4 56348229 56348278 -99281842 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1014 229 313 152 0 chr4 56348570 56348669 -99281451 - MIR SINE MIR -34 228 115 5 1014 252 0 0 0 chr4 56348676 56348704 -99281416 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1014 1162 149 36 156 chr4 56348705 56348957 -99281163 + RLTR28 LTR ERVL 224 455 -69 5 1014 365 90 15 0 chr4 56348957 56349024 -99281096 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1014 1162 149 36 156 chr4 56349024 56349105 -99281015 + RLTR28 LTR ERVL 456 517 -7 5 1014 263 28 28 0 chr4 56349830 56349866 -99280254 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1014 677 269 158 52 chr4 56352987 56353582 -99276538 + L1MCa LINE L1 447 1104 -5404 5 1014 180 111 0 0 chr4 56353628 56353655 -99276465 + (ATG)n Simple_repeat Simple_repeat 2 28 0 5 1014 423 38 0 0 chr4 56353663 56353716 -99276404 + (TAA)n Simple_repeat Simple_repeat 1 53 0 5 1014 351 169 0 0 chr4 56353762 56353833 -99276287 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1014 235 178 0 0 chr4 56353871 56353916 -99276204 + L1MCa LINE L1 1304 1348 -5160 5 1014 517 328 60 137 chr4 56354031 56354403 -99275717 + MLT1A1 LTR MaLR 13 401 -7 5 1014 346 202 193 0 chr4 56354403 56354512 -99275608 + L1MCa LINE L1 1486 1615 -4893 5 1014 378 42 0 0 chr4 56354588 56354636 -99275484 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1014 192 40 0 0 chr4 56354636 56354661 -99275459 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 5 1014 1150 29 7 0 chr4 56354791 56354927 -99275193 + B1_Mus1 SINE Alu 3 139 -9 5 1014 252 59 0 0 chr4 56354927 56354961 -99275159 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1014 1033 270 75 55 chr4 56354972 56355541 -99274579 + L1MCa LINE L1 1941 2522 -3799 5 1014 963 132 11 6 chr4 56355541 56355716 -99274404 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 5 1014 1033 269 33 100 chr4 56355716 56356047 -99274073 + L1MCa LINE L1 2523 2843 -3478 5 1014 446 328 73 66 chr4 56356055 56356329 -99273791 + B4 SINE B4 2 277 -15 5 1014 1743 256 111 5 chr4 56356357 56357133 -99272987 + L1MCa LINE L1 2850 3707 -2614 5 1014 528 200 129 18 chr4 56358529 56358692 -99271428 - Lx9 LINE L1 -234 7410 7230 5 1014 901 318 10 17 chr4 56358764 56359021 -99271099 - B4 SINE B4 -23 269 1 5 1014 345 340 150 8 chr4 56359072 56359299 -99270821 - MLT-int LTR MaLR -1255 480 242 5 1014 1183 222 15 52 chr4 56359346 56359801 -99270319 - Lx7 LINE L1 -16 7680 7160 5 1014 1074 294 80 35 chr4 56360255 56360711 -99269409 + L1MCa LINE L1 3963 4416 -1905 5 1014 180 0 0 0 chr4 56360711 56360731 -99269389 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 5 126 1074 294 80 35 chr4 56360731 56361155 -99268965 + L1MCa LINE L1 4417 4882 -1439 5 1015 271 196 0 0 chr4 56361228 56361284 -99268836 + L1MCa LINE L1 4998 5053 -1268 5 1015 326 223 22 20 chr4 56361565 56361667 -99268453 + L1MC1 LINE L1 6227 6332 -12 5 1015 506 316 36 7 chr4 56361744 56361884 -99268236 - RSINE1 SINE B4 -20 145 2 5 1015 501 115 0 0 chr4 56362613 56362691 -99267429 + (TTGTG)n Simple_repeat Simple_repeat 2 79 0 5 1015 688 305 43 0 chr4 56363080 56363267 -99266853 + B4A SINE B4 19 213 -79 5 1015 203 0 0 36 chr4 56364219 56364247 -99265873 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 5 1015 450 0 0 0 chr4 56364421 56364471 -99265649 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1015 198 374 127 32 chr4 56365030 56365400 -99264720 + L2 LINE L2 2671 3075 -344 5 1015 303 350 16 8 chr4 56365609 56365733 -99264387 + PB1 SINE Alu 1 125 -2 5 1015 684 24 0 0 chr4 56365791 56365873 -99264247 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1015 21 0 0 0 chr4 56366127 56366148 -99263972 + GC_rich Low_complexity Low_complexity 1 21 0 5 1015 1269 311 105 11 chr4 56366874 56367709 -99262411 - L1MC2 LINE L1 -117 6227 5314 5 1015 348 294 67 24 chr4 56367700 56367909 -99262211 - L1MD3 LINE L1 0 7995 7778 5 1015 2807 156 31 2 chr4 56367976 56368485 -99261635 - RLTR28 LTR ERVL 0 524 1 5 1015 337 302 165 19 chr4 56368664 56368870 -99261250 + L1MEf LINE L1 1 236 -6306 5 1015 234 0 0 0 chr4 56368914 56368940 -99261180 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1015 363 306 73 53 chr4 56369534 56370079 -99260041 + L1MEf LINE L1 928 1483 -5059 5 1015 7427 61 7 1 chr4 56370215 56371305 -99258815 + L1_Mus1 LINE L1 5474 6567 0 5 1015 323 321 17 92 chr4 56371430 56371550 -99258570 + RSINE1 SINE B4 55 165 0 5 1015 214 250 23 45 chr4 56371618 56371794 -99258326 + (CA)n Simple_repeat Simple_repeat 1 172 0 5 1015 448 250 99 43 chr4 56371834 56372078 -99258042 + L1MEf LINE L1 1796 2120 -4620 5 1015 376 278 88 46 chr4 56372224 56372389 -99257731 - ORR1E LTR MaLR -8 371 184 5 1015 432 232 0 10 chr4 56372530 56372626 -99257494 - ORR1E LTR MaLR -256 103 9 5 1015 608 279 147 82 chr4 56372908 56373532 -99256588 + L1MEf LINE L1 2560 3176 -3468 5 1015 603 260 107 0 chr4 56373532 56373709 -99256411 + B3A SINE B2 3 198 0 5 1015 608 276 154 88 chr4 56373709 56374209 -99255911 + L1MEf LINE L1 3177 3759 -2885 5 1015 219 270 16 0 chr4 56375679 56375742 -99254378 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 5 1015 258 32 0 0 chr4 56375746 56375777 -99254343 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1015 798 299 85 15 chr4 56376669 56376941 -99253179 + B4 SINE B4 2 292 0 5 1015 229 376 59 43 chr4 56377121 56377374 -99252746 + MER102a DNA MER1_type 73 329 -1 5 1015 236 275 12 24 chr4 56377822 56377904 -99252216 - MIRb SINE MIR -125 143 63 5 1015 255 286 39 0 chr4 56377937 56378014 -99252106 + B4A SINE B4 213 292 0 5 1015 621 251 0 0 chr4 56378014 56378253 -99251867 + (CA)n Simple_repeat Simple_repeat 1 239 0 5 1015 231 36 0 0 chr4 56379624 56379652 -99250468 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 5 1015 302 250 0 0 chr4 56379666 56379730 -99250390 - ID4_ SINE ID -16 67 4 5 1015 512 285 22 7 chr4 56379735 56379873 -99250247 - B1F SINE Alu 0 149 10 5 1015 552 318 24 47 chr4 56380333 56380544 -99249576 + MLT1D LTR MaLR 5 210 -295 5 1015 574 286 148 20 chr4 56380561 56380764 -99249356 + MLT1D LTR MaLR 268 496 -9 5 1015 256 236 0 0 chr4 56383818 56383873 -99246247 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1015 352 310 40 65 chr4 56383917 56384041 -99246079 + B4A SINE B4 109 229 -63 5 1015 369 0 0 0 chr4 56384103 56384144 -99245976 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 1015 564 56 0 0 chr4 56384151 56384223 -99245897 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1015 579 298 33 0 chr4 56384835 56384986 -99245134 + RSINE1 SINE B4 3 158 -7 5 1015 189 154 0 0 chr4 56385018 56385057 -99245063 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1015 433 210 0 112 chr4 56385689 56385823 -99244297 + MIRc SINE MIR 148 266 -2 5 1015 714 326 14 14 chr4 56386236 56386519 -99243601 - B4A SINE B4 -6 286 4 5 1015 283 376 41 35 chr4 56387177 56387348 -99242772 - MIR3 SINE MIR -10 198 27 5 1015 24 0 0 0 chr4 56389235 56389259 -99240861 + AT_rich Low_complexity Low_complexity 1 24 0 5 1015 247 316 34 26 chr4 56390585 56390702 -99239418 - L2a LINE L2 -2 3424 3307 5 1015 211 339 66 50 chr4 56390711 56390832 -99239288 + MIR3 SINE MIR 77 199 -9 5 1015 24 53 0 0 chr4 56391044 56391082 -99239038 + AT_rich Low_complexity Low_complexity 1 38 0 5 1015 47 33 0 0 chr4 56391167 56391228 -99238892 + AT_rich Low_complexity Low_complexity 1 61 0 5 1015 2669 295 50 53 chr4 56391248 56392297 -99237823 - Lx9 LINE L1 -131 7513 6469 5 1015 361 259 22 3 chr4 56392749 56392841 -99237279 - ID4_ SINE ID -52 100 8 5 1015 228 295 110 51 chr4 56392850 56392968 -99237152 - PB1 SINE Alu 0 127 3 5 1015 198 143 0 0 chr4 56392974 56393009 -99237111 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1015 336 24 0 0 chr4 56393137 56393178 -99236942 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1015 1024 228 39 5 chr4 56393205 56393408 -99236712 - B3 SINE B2 -5 211 2 6 1015 2289 143 114 0 chr4 56393733 56394083 -99236037 - ORR1B1 LTR MaLR -4 390 1 6 1015 1491 209 68 86 chr4 56395094 56395477 -99234643 + MTEa LTR MaLR 4 379 0 6 1015 1994 196 44 20 chr4 56396964 56397370 -99232750 - MTD LTR MaLR -3 416 1 6 1015 30 27 0 0 chr4 56398533 56398570 -99231550 + AT_rich Low_complexity Low_complexity 1 37 0 6 1015 1096 313 55 43 chr4 56398661 56399329 -99230791 + L1MA10 LINE L1 3273 3948 -2192 6 1015 588 298 143 32 chr4 56399325 56399793 -99230327 + L1MA10 LINE L1 5798 6317 -17 6 1015 281 319 0 0 chr4 56400294 56400384 -99229736 - MIRc SINE MIR -106 156 67 6 1015 226 319 29 0 chr4 56402850 56402919 -99227201 - ID2 SINE ID -11 72 2 6 1015 985 72 7 0 chr4 56404058 56404196 -99225924 + L1Md_F3 LINE L1 6446 6584 0 6 1015 264 206 29 58 chr4 56404262 56404283 -99225837 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 1015 225 0 0 0 chr4 56404283 56404308 -99225812 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1015 264 206 29 58 chr4 56404308 56404425 -99225695 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 1015 4374 59 60 8 chr4 56404902 56405434 -99224686 - LTRIS2 LTR ERV1 0 564 5 6 1015 355 207 0 79 chr4 56405434 56405517 -99224603 + ID4 SINE ID 5 82 -1 6 1015 1072 246 5 9 chr4 56405586 56405799 -99224321 - B3 SINE B2 -4 212 1 6 1015 240 313 99 51 chr4 56405861 56406043 -99224077 + MIRc SINE MIR 25 218 -58 6 1015 258 307 24 98 chr4 56407342 56407534 -99222586 + MIR SINE MIR 3 183 -85 6 1015 33534 77 10 16 chr4 56407562 56412797 -99217323 + L1Md_F LINE L1 387 5586 -297 6 1015 8600 44 4 2 chr4 56412797 56413778 -99216342 + L1Md_F2 LINE L1 5587 6569 -13 6 1015 225 0 0 0 chr4 56413782 56413807 -99216313 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1015 33534 70 11 1 chr4 56413807 56413834 -99216286 + L1Md_F LINE L1 5587 5614 -269 6 1015 183 42 0 0 chr4 56413878 56413902 -99216218 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1015 1200 111 0 0 chr4 56415059 56415239 -99214881 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1015 1739 157 11 0 chr4 56415273 56415560 -99214560 - RMER6A LTR ERVK -466 290 1 6 1015 465 66 0 0 chr4 56415705 56415766 -99214354 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1015 1058 211 96 8 chr4 56415798 56416037 -99214083 - RMER1B Other Other -2 1064 805 6 1015 235 282 97 64 chr4 56416163 56416587 -99213533 + L1_Mur3 LINE L1 1211 1648 -4232 6 1015 3900 155 33 67 chr4 56416633 56417399 -99212721 + L1VL1 LINE L1 194 933 -5489 6 1015 30225 118 10 10 chr4 56417420 56421180 -99208940 + L1_Mus3 LINE L1 1282 5075 -808 6 1015 3488 43 10 0 chr4 56421180 56421572 -99208548 - MTA_Mm LTR MaLR 0 396 1 6 1015 30225 89 54 6 chr4 56421572 56423089 -99207031 + L1_Mus3 LINE L1 5076 6631 -7 6 1015 352 174 179 15 chr4 56424541 56424675 -99205445 + Lx9 LINE L1 7488 7643 -1 6 1015 379 352 95 58 chr4 56425396 56425776 -99204344 - MLT1N2 LTR MaLR -4 558 165 6 1015 7017 183 36 12 chr4 56426149 56427414 -99202706 - Lx5 LINE L1 0 7050 5756 6 1015 309 183 39 0 chr4 56427417 56427486 -99202634 - Lx5 LINE L1 -89 5791 5721 6 1015 323 256 52 21 chr4 56428040 56428181 -99201939 + L1MA4 LINE L1 5778 5924 -376 6 1015 206 149 64 0 chr4 56428349 56428396 -99201724 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1015 249 98 0 0 chr4 56428503 56428544 -99201576 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1015 2324 130 113 0 chr4 56428619 56428973 -99201147 + ORR1B1 LTR MaLR 1 394 0 6 1015 845 261 14 36 chr4 56428993 56429212 -99200908 + B3 SINE B2 1 214 -2 6 1015 344 296 132 7 chr4 56429563 56429699 -99200421 + MIR SINE MIR 93 245 -17 6 1015 1773 116 82 16 chr4 56429821 56430127 -99199993 + IAPLTR4 LTR ERVK 1 326 -19 6 1015 881 194 36 58 chr4 56430993 56431217 -99198903 + Lx2B LINE L1 6782 7000 0 6 1015 321 303 15 76 chr4 56431247 56431379 -99198741 + B3A SINE B2 75 198 0 6 1015 188 374 122 6 chr4 56431574 56431730 -99198390 - MIRb SINE MIR -84 184 11 6 1015 331 346 108 52 chr4 56431997 56432674 -99197446 - MamRep605 Unknown Unknown -83 793 79 6 1015 289 288 89 9 chr4 56433281 56433435 -99196685 - L1MD3 LINE L1 -170 7825 7619 6 1015 979 248 66 55 chr4 56434000 56434273 -99195847 + B4A SINE B4 1 276 -16 6 1015 528 16 0 0 chr4 56434278 56434339 -99195781 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1015 707 287 5 30 chr4 56436789 56436990 -99193130 + B3A SINE B2 3 198 0 6 1015 306 0 0 0 chr4 56436992 56437026 -99193094 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1015 495 311 54 22 chr4 56437218 56437402 -99192718 + ID_B1 SINE B4 4 193 -31 6 1015 534 31 0 0 chr4 56437408 56437472 -99192648 + (CATA)n Simple_repeat Simple_repeat 3 66 0 6 1015 467 283 96 26 chr4 56437989 56438145 -99191975 - B3A SINE B2 -22 176 10 6 1015 2510 29 0 0 chr4 56438555 56438830 -99191290 - L1Md_T LINE L1 0 6582 6308 6 1015 322 263 42 22 chr4 56439307 56439417 -99190703 - MLT1C LTR MaLR -2 625 511 6 1015 335 331 74 0 chr4 56439524 56439687 -99190433 - MLT1C LTR MaLR -115 352 178 6 1015 586 290 42 21 chr4 56440044 56440234 -99189886 + MTD LTR MaLR 10 203 -216 6 1015 2444 60 0 0 chr4 56440237 56440538 -99189582 - L1_Mus2 LINE L1 -491 6075 5775 6 1015 3475 51 63 20 chr4 56440538 56440979 -99189141 + L1_Mus2 LINE L1 6107 6566 0 6 1015 270 265 35 45 chr4 56440992 56441130 -99188990 + MTD LTR MaLR 182 333 -26 6 1015 253 348 78 9 chr4 56441251 56441367 -99188753 + L2b LINE L2 3050 3173 -202 6 1015 588 141 0 0 chr4 56441615 56441736 -99188384 + (TG)n Simple_repeat Simple_repeat 1 121 0 6 1015 631 218 99 41 chr4 56441736 56441779 -99188341 - B3A SINE B2 -16 182 143 6 1015 993 123 0 0 chr4 56441779 56441958 -99188162 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1015 631 218 99 41 chr4 56441958 56442086 -99188034 - B3A SINE B2 -56 142 2 6 1015 1069 219 48 5 chr4 56442114 56442320 -99187800 + B3 SINE B2 1 215 -1 6 1015 26 0 0 0 chr4 56442320 56442346 -99187774 + AT_rich Low_complexity Low_complexity 1 26 0 6 1015 220 333 105 20 chr4 56442894 56443047 -99187073 - L2a LINE L2 -45 3381 3216 6 1015 234 105 0 0 chr4 56443641 56443679 -99186441 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1015 206 324 13 39 chr4 56443702 56443779 -99186341 + L3 LINE CR1 4159 4233 -256 6 1015 558 0 0 0 chr4 56444028 56444090 -99186030 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1015 180 0 0 0 chr4 56444091 56444111 -99186009 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1015 644 275 67 5 chr4 56444350 56444558 -99185562 + ID_B1 SINE B4 4 224 0 6 1015 383 301 163 0 chr4 56444748 56444901 -99185219 - B3A SINE B2 -18 180 3 6 1015 24 0 0 0 chr4 56444951 56444975 -99185145 + AT_rich Low_complexity Low_complexity 1 24 0 6 1015 1872 310 18 33 chr4 56445210 56445733 -99184387 - Lx8 LINE L1 -690 6783 6269 6 1015 2919 79 9 45 chr4 56445733 56446155 -99183965 - MTB_Mm LTR MaLR 0 407 1 6 1015 1872 310 18 33 chr4 56446155 56446239 -99183881 - Lx8 LINE L1 -1205 6268 6191 6 1015 270 116 0 0 chr4 56446239 56446282 -99183838 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1015 1872 310 18 33 chr4 56446282 56446341 -99183779 - Lx8 LINE L1 -1283 6190 6128 6 1015 1051 327 48 30 chr4 56446335 56446946 -99183174 + Lx8 LINE L1 6813 7434 -39 6 1015 678 368 14 21 chr4 56447019 56447305 -99182815 + B4 SINE B4 9 292 0 6 1015 38955 15 3 2 chr4 56447489 56454048 -99176072 + L1Md_A LINE L1 1 5586 -297 6 1015 8988 15 0 0 chr4 56454048 56455044 -99175076 + L1Md_A LINE L1 5587 6582 0 6 1015 836 298 8 32 chr4 56455153 56455177 -99174943 - B4A SINE B4 -44 248 230 6 1015 458 252 96 0 chr4 56455177 56455312 -99174808 - B1_Mur1 SINE Alu 0 149 2 6 1015 836 298 8 32 chr4 56455312 56455540 -99174580 - B4A SINE B4 -63 229 2 6 1015 239 320 126 0 chr4 56455540 56455643 -99174477 - MIRc SINE MIR -63 205 90 6 1015 644 276 119 38 chr4 56456643 56456986 -99173134 - L1ME2z LINE L1 -454 5990 5620 6 1015 214 137 19 19 chr4 56457143 56457195 -99172925 + (TATAA)n Simple_repeat Simple_repeat 2 53 0 6 1015 6018 53 0 11 chr4 56457255 56457966 -99172154 + L1Md_F2 LINE L1 5849 6559 -23 6 1015 384 22 0 0 chr4 56457966 56458011 -99172109 + (TAA)n Simple_repeat Simple_repeat 1 45 0 6 1015 6018 53 0 11 chr4 56458011 56458041 -99172079 + L1Md_F2 LINE L1 6560 6582 0 6 1015 225 0 0 0 chr4 56458099 56458124 -99171996 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1015 226 384 109 10 chr4 56458219 56458411 -99171709 + MIRb SINE MIR 45 255 -13 6 1015 372 253 0 0 chr4 56459802 56459877 -99170243 + ID4_ SINE ID 7 81 -2 6 1015 427 347 115 40 chr4 56459911 56460232 -99169888 + LTR16A LTR ERVL 107 451 0 6 1015 624 152 0 42 chr4 56460243 56460366 -99169754 + GA-rich Low_complexity Low_complexity 3 120 0 6 1015 1329 73 0 0 chr4 56460366 56460544 -99169576 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 1015 624 152 0 42 chr4 56460544 56460564 -99169556 + polypurine Low_complexity Low_complexity 121 140 0 6 1015 1516 0 8 8 chr4 56460564 56460820 -99169300 + (GAA)n Simple_repeat Simple_repeat 1 256 0 6 1015 203 204 19 0 chr4 56461338 56461392 -99168728 + CT-rich Low_complexity Low_complexity 1 55 0 6 1015 602 332 69 33 chr4 56461535 56461868 -99168252 - MER2 DNA MER2_type 0 345 1 6 1015 538 242 523 24 chr4 56462345 56462593 -99167527 + MTE2b LTR MaLR 3 374 -5 6 1015 492 18 0 0 chr4 56464194 56464251 -99165869 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1015 216 143 0 0 chr4 56464256 56464298 -99165822 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 6 1015 739 310 13 21 chr4 56464383 56464617 -99165503 - B4 SINE B4 -51 241 10 6 1015 2025 203 38 2 chr4 56464636 56465031 -99165089 + MTC LTR MaLR 5 413 -8 6 1015 6445 63 2 27 chr4 56466520 56467370 -99162750 - L1_Mus2 LINE L1 0 6566 5738 6 1015 7692 69 17 0 chr4 56467389 56468853 -99161267 - L1_Mus1 LINE L1 0 6567 5079 6 1015 2679 112 8 5 chr4 56469144 56469538 -99160582 - L1_Mus4 LINE L1 0 6636 6242 7 1015 237 96 57 19 chr4 56472078 56472131 -99157989 - Lx9 LINE L1 -5 7639 7585 7 1015 982 274 32 11 chr4 56472404 56472684 -99157436 + Lx9 LINE L1 6358 6643 -1001 7 1015 663 13 0 0 chr4 56472997 56473073 -99157047 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1015 636 359 52 4 chr4 56473793 56474000 -99156120 + B4A SINE B4 9 220 -72 7 1015 602 26 13 0 chr4 56474000 56474076 -99156044 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 7 1015 636 359 52 4 chr4 56474076 56474139 -99155981 + B4A SINE B4 221 291 -1 7 1015 522 196 0 0 chr4 56474148 56474255 -99155865 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 1015 238 301 24 0 chr4 56474659 56474742 -99155378 + GA-rich Low_complexity Low_complexity 3 87 0 7 1015 25 0 0 0 chr4 56475209 56475234 -99154886 + AT_rich Low_complexity Low_complexity 1 25 0 7 1015 371 301 78 7 chr4 56477666 56477820 -99152300 - LTR33A LTR ERVL -11 509 345 7 1015 278 397 56 20 chr4 56477842 56478040 -99152080 - LTR33A LTR ERVL -223 308 104 7 1015 487 208 8 32 chr4 56478216 56478340 -99151780 - RMER1B Other Other -4 1062 942 7 1015 1600 197 13 7 chr4 56478503 56478805 -99151315 - RMER1B Other Other -187 879 576 7 1015 1919 78 3 75 chr4 56478866 56479173 -99150947 + ORR1A2 LTR MaLR 1 285 -42 7 1015 2627 144 75 39 chr4 56479174 56480199 -99149921 + Lx LINE L1 5557 6651 -3 7 1015 378 96 0 0 chr4 56480213 56480265 -99149855 + ORR1A3 LTR MaLR 275 326 0 7 1015 805 256 155 42 chr4 56480269 56480796 -99149324 - RMER1C Other Other -460 882 1 7 1015 730 322 25 28 chr4 56481056 56481344 -99148776 - MT2A LTR ERVL -47 554 191 7 1015 366 318 0 37 chr4 56481346 56481480 -99148640 - MTEa LTR MaLR -233 146 18 7 1015 3339 18 39 0 chr4 56481618 56481999 -99148121 - MTA_Mm LTR MaLR 0 396 1 7 1015 957 234 89 102 chr4 56482176 56482557 -99147563 - MTE2a LTR MaLR -3 376 1 7 1015 209 322 120 17 chr4 56482707 56482824 -99147296 + MIRb SINE MIR 82 210 -58 7 1015 218 180 0 16 chr4 56483169 56483231 -99146889 + (TTA)n Simple_repeat Simple_repeat 2 62 0 7 1015 569 278 0 44 chr4 56483232 56483390 -99146730 - RSINE1 SINE B4 -9 156 6 7 1015 520 253 161 21 chr4 56483990 56484176 -99145944 + B3A SINE B2 5 216 0 7 1015 463 239 0 18 chr4 56484271 56484382 -99145738 - PB1D10 SINE Alu -8 109 1 7 1015 232 214 198 30 chr4 56484462 56484563 -99145557 + L2a LINE L2 3305 3422 -4 7 1015 347 322 21 47 chr4 56487517 56487709 -99142411 - MER57C2 LTR ERV1 -6 428 242 7 1015 519 336 80 17 chr4 56490509 56490748 -99139372 + B4A SINE B4 16 269 -23 7 1015 581 90 11 0 chr4 56490753 56490842 -99139278 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1016 349 222 0 182 chr4 56493490 56493622 -99136498 + PB1 SINE Alu 12 119 -8 7 1016 851 324 21 21 chr4 56493635 56493919 -99136201 + B4 SINE B4 2 285 -7 7 1016 303 286 0 0 chr4 56493981 56494051 -99136069 + ID4_ SINE ID 3 72 -11 7 1016 299 240 0 10 chr4 56494885 56494982 -99135138 + (TA)n Simple_repeat Simple_repeat 2 97 0 7 1016 701 276 10 40 chr4 56495045 56495245 -99134875 + Lx8 LINE L1 6752 6945 -528 7 1016 180 0 0 0 chr4 56495287 56495307 -99134813 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1016 1252 47 0 0 chr4 56495489 56495637 -99134483 + B1_Mus1 SINE Alu 1 148 0 7 1016 231 239 213 26 chr4 56495953 56496108 -99134012 + L2a LINE L2 3239 3422 -4 7 1016 193 349 0 0 chr4 56497728 56497791 -99132329 + MIR3 SINE MIR 107 169 -39 7 1016 997 273 12 4 chr4 56498573 56498823 -99131297 - B4 SINE B4 -38 254 3 7 1016 358 185 74 0 chr4 56498953 56499034 -99131086 + MER58B DNA MER1_type 242 328 -13 7 1016 526 311 19 33 chr4 56500651 56500864 -99129256 + MER106A DNA MER1_type 1 210 -26 1 1016 36 0 0 0 chr4 56501048 56501084 -99129036 + AT_rich Low_complexity Low_complexity 1 36 0 2 1016 222 118 0 0 chr4 56501264 56501298 -99128822 + (TCTCCC)n Simple_repeat Simple_repeat 3 36 0 3 1016 349 319 8 8 chr4 56501351 56501471 -99128649 - Lx9 LINE L1 -269 7375 7256 4 1016 337 222 10 10 chr4 56503386 56503486 -99126634 + (TATG)n Simple_repeat Simple_repeat 4 103 0 5 1016 696 35 0 0 chr4 56503854 56503941 -99126179 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1016 314 174 29 14 chr4 56504396 56504466 -99125654 + HAL1-3A_ME LINE L1 1979 2049 -809 7 1016 836 128 0 14 chr4 56504473 56504616 -99125504 + (GGGAGA)n Simple_repeat Simple_repeat 6 146 0 8 1016 233 349 19 0 chr4 56504637 56504743 -99125377 - L4 LINE RTE -180 1849 1742 9 1016 235 236 17 8 chr4 56504775 56504845 -99125275 - L2b LINE L2 -5 3382 3313 1 1016 423 0 0 0 chr4 56506445 56506492 -99123628 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1016 429 217 56 19 chr4 56507980 56508088 -99122032 - Lx2B LINE L1 -3 6997 6886 1 1016 233 57 0 28 chr4 56510482 56510518 -99119602 + (GGA)n Simple_repeat Simple_repeat 2 36 0 1 1016 1359 67 0 0 chr4 56510519 56510698 -99119422 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1016 344 256 44 11 chr4 56510852 56510943 -99119177 + PB1D10 SINE Alu 15 108 -9 1 1016 1558 48 5 37 chr4 56510973 56511190 -99118930 + L1Md_F2 LINE L1 6373 6582 0 1 1016 464 233 12 102 chr4 56511199 56511268 -99118852 + B4 SINE B4 8 70 -222 1 1016 777 271 38 14 chr4 56511268 56511478 -99118642 - B3 SINE B2 0 216 2 1 1016 464 233 12 102 chr4 56511478 56511575 -99118545 + B4 SINE B4 71 159 -133 1 1016 410 137 0 40 chr4 56511595 56511694 -99118426 + GA-rich Low_complexity Low_complexity 3 97 0 1 1016 206 182 15 0 chr4 56511764 56511830 -99118290 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1016 1165 56 0 0 chr4 56512211 56512353 -99117767 + B1_Mus2 SINE Alu 2 143 -4 2 1016 244 0 56 0 chr4 56512353 56512389 -99117731 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1016 604 290 79 19 chr4 56512913 56513291 -99116829 + L1M5 LINE L1 5359 5766 -2116 2 1016 375 193 60 0 chr4 56513810 56513893 -99116227 + B1_Mus2 SINE Alu 47 134 -13 2 1016 339 25 0 0 chr4 56513895 56513935 -99116185 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1016 751 175 11 6 chr4 56513935 56514113 -99116007 + GA-rich Low_complexity Low_complexity 2 180 0 2 1016 352 127 36 0 chr4 56514113 56514168 -99115952 + polypurine Low_complexity Low_complexity 2 58 0 2 1016 793 147 13 7 chr4 56514168 56514319 -99115801 + GA-rich Low_complexity Low_complexity 4 155 0 2 1016 268 242 10 49 chr4 56515239 56515333 -99114787 + AluG_3 SINE Alu 140 214 -97 2 1016 228 293 0 0 chr4 56515333 56515391 -99114729 + GA-rich Low_complexity Low_complexity 2 59 0 3 1016 201 147 0 0 chr4 56518214 56518248 -99111872 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 3 1016 4278 80 39 3 chr4 56518327 56518915 -99111205 + L1_Mus4 LINE L1 6028 6636 0 3 1016 250 314 48 19 chr4 56520229 56520333 -99109787 + MIRc SINE MIR 65 171 -97 3 1016 200 333 16 0 chr4 56520889 56520952 -99109168 - L2c LINE L2 -219 3168 3105 3 1016 234 283 87 17 chr4 56521265 56521380 -99108740 - Charlie15a DNA MER1_type -6 218 96 3 1016 851 99 0 0 chr4 56522531 56522652 -99107468 + B2_Mm2 SINE B2 1 121 -74 3 1016 805 281 74 37 chr4 56523341 56523666 -99106454 - ORR1E LTR MaLR -15 344 8 3 1016 9065 7 0 0 chr4 56523933 56524953 -99105167 + L1_Mm LINE L1 2653 3672 -2211 3 1016 318 292 10 48 chr4 56525306 56525403 -99104717 + B4A SINE B4 2 94 -198 3 1016 1520 280 53 45 chr4 56525406 56525967 -99104153 + Lx9 LINE L1 6655 7220 -424 4 1016 22 0 0 0 chr4 56526153 56526175 -99103945 + AT_rich Low_complexity Low_complexity 1 22 0 4 1016 279 0 0 0 chr4 56527075 56527106 -99103014 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1016 667 284 17 80 chr4 56527152 56527389 -99102731 - B4A SINE B4 -24 268 47 4 1016 240 314 67 17 chr4 56527750 56527870 -99102250 - MIRc SINE MIR -78 190 65 4 1016 199 316 21 10 chr4 56528101 56528197 -99101923 + MIRb SINE MIR 51 147 -121 4 1016 505 238 84 95 chr4 56528242 56528430 -99101690 + ORR1D2 LTR MaLR 1 186 -184 4 1016 1353 184 53 18 chr4 56528430 56528712 -99101408 - ORR1C1 LTR MaLR 0 378 87 4 1016 9784 11 0 0 chr4 56528712 56530553 -99099567 - L1Md_A LINE L1 0 6582 4813 4 1016 9853 6 0 0 chr4 56530549 56531643 -99098477 + L1Md_A LINE L1 3661 4754 -1129 4 1016 547 162 20 0 chr4 56531643 56531742 -99098378 - ORR1C1 LTR MaLR -277 101 1 4 1016 306 0 0 0 chr4 56531976 56532010 -99098110 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1016 549 0 0 0 chr4 56532335 56532396 -99097724 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1016 2220 31 0 0 chr4 56533344 56533601 -99096519 + L1Md_F2 LINE L1 6307 6563 -19 5 1016 234 317 75 0 chr4 56534749 56534869 -99095251 + MER5A1 DNA MER1_type 20 148 -18 5 1016 642 135 0 0 chr4 56535095 56535199 -99094921 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 1016 788 235 5 79 chr4 56535199 56535402 -99094718 - B4 SINE B4 -98 194 7 5 1016 785 294 42 0 chr4 56536434 56536648 -99093472 - MER58A DNA MER1_type 0 224 2 5 1016 1057 161 36 36 chr4 56536829 56537048 -99093072 - URR1B DNA MER1_type 0 225 7 5 1016 294 73 0 0 chr4 56538174 56538215 -99091905 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1016 240 265 0 14 chr4 56538745 56538814 -99091306 + (CAT)n Simple_repeat Simple_repeat 2 69 0 5 1016 492 219 88 0 chr4 56539105 56539219 -99090901 + B3 SINE B2 89 212 -4 5 1016 303 345 53 0 chr4 56539227 56539340 -99090780 + MER63B DNA AcHobo 306 424 -12 6 1016 280 316 13 0 chr4 56539534 56539613 -99090507 - ID4_ SINE ID -3 80 1 6 1016 1229 42 0 0 chr4 56540109 56540252 -99089868 - B1_Mm SINE Alu -3 144 2 6 1016 629 259 201 52 chr4 56541365 56541728 -99088392 + MTC LTR MaLR 5 421 0 6 1016 255 133 0 0 chr4 56542051 56542096 -99088024 + (TTG)n Simple_repeat Simple_repeat 1 45 0 6 1016 204 40 0 0 chr4 56542118 56542143 -99087977 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 6 1016 471 293 43 7 chr4 56542165 56542306 -99087814 - RSINE1 SINE B4 -17 148 3 6 1016 202 238 0 0 chr4 56544081 56544123 -99085997 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 6 1016 810 270 74 44 chr4 56544140 56544411 -99085709 - B4 SINE B4 -4 288 10 6 1016 320 342 0 0 chr4 56544873 56544984 -99085136 + PB1D10 SINE Alu 4 114 -3 6 1016 186 302 0 94 chr4 56545830 56545936 -99084184 - L2c LINE L2 -382 3005 2910 7 1016 360 0 0 0 chr4 56546821 56546861 -99083259 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1016 369 109 0 0 chr4 56546861 56546916 -99083204 + (CACG)n Simple_repeat Simple_repeat 1 55 0 7 1016 960 109 223 5 chr4 56547622 56547806 -99082314 - URR1A DNA MER1_type 0 226 3 7 1016 798 273 77 9 chr4 56547853 56548086 -99082034 + RMER1C Other Other 667 915 -427 7 1016 1026 66 73 0 chr4 56548177 56548314 -99081806 - B1_Mm SINE Alu 0 147 1 7 1016 359 360 7 20 chr4 56548643 56548793 -99081327 + Arthur1A DNA Tip100 26 173 -4 7 1016 381 377 41 7 chr4 56548802 56548949 -99081171 - LTR33A LTR ERVL -283 237 86 7 1016 714 300 24 24 chr4 56548951 56549156 -99080964 + ORR1E LTR MaLR 1 205 -154 7 1016 361 247 26 0 chr4 56550715 56550792 -99079328 + B3 SINE B2 1 79 -137 7 1016 3633 44 0 5 chr4 56550792 56551223 -99078897 + L1Md_F2 LINE L1 6041 6469 -113 8 1016 253 289 0 73 chr4 56551235 56551317 -99078803 + B3A SINE B2 107 182 -16 7 1016 260 257 14 0 chr4 56551318 56551392 -99078728 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1016 955 0 17 0 chr4 56551448 56551563 -99078557 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 8 1016 187 319 0 0 chr4 56551722 56551769 -99078351 - MIR SINE MIR -110 98 52 8 1016 219 103 0 0 chr4 56551891 56551930 -99078190 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1016 243 175 35 17 chr4 56552412 56552470 -99077650 + CT-rich Low_complexity Low_complexity 2 60 0 8 1016 208 299 168 30 chr4 56552491 56552622 -99077498 - L2b LINE L2 -31 3344 3196 8 1016 551 248 83 160 chr4 56552666 56552907 -99077213 + B4A SINE B4 5 231 -61 8 1016 1067 109 0 7 chr4 56552907 56553055 -99077065 + B1_Mus1 SINE Alu 1 147 -1 8 1016 551 248 83 160 chr4 56553055 56553125 -99076995 + B4A SINE B4 232 292 0 8 1016 237 256 0 0 chr4 56553169 56553251 -99076869 + (CATA)n Simple_repeat Simple_repeat 2 83 0 8 1016 189 74 0 0 chr4 56553307 56553334 -99076786 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1016 249 299 70 13 chr4 56553418 56553574 -99076546 - Lx7 LINE L1 -12 7684 7520 9 1016 1538 244 53 26 chr4 56553627 56554044 -99076076 - Lx7 LINE L1 -440 7256 6829 9 1016 243 258 0 15 chr4 56556231 56556298 -99073822 - L1M4 LINE L1 -1260 4886 4821 9 1016 264 331 63 21 chr4 56556437 56556628 -99073492 - L1ME4a LINE L1 -213 5911 5713 9 1016 408 357 73 40 chr4 56556718 56557045 -99073075 - LTR33 LTR ERVL -101 414 77 9 1016 3411 53 5 2 chr4 56557117 56557512 -99072608 - MTA_Mm LTR MaLR 0 396 1 9 1016 387 138 0 44 chr4 56557859 56557927 -99072193 + RMER15 LTR ERVL 1 65 -510 9 1016 1867 219 129 40 chr4 56557966 56558014 -99072106 + RMER15 LTR ERVL 27 74 -501 9 1016 1431 83 22 0 chr4 56558014 56558195 -99071925 + B2_Mm2 SINE B2 3 187 -8 9 1016 1867 219 129 40 chr4 56558195 56558650 -99071470 + RMER15 LTR ERVL 75 575 0 9 1016 659 323 25 5 chr4 56560474 56560676 -99069444 + B4 SINE B4 83 288 -4 9 1016 242 219 15 30 chr4 56560696 56560762 -99069358 + (CATA)n Simple_repeat Simple_repeat 4 68 0 9 1016 324 338 73 76 chr4 56561678 56562101 -99068019 + L2b LINE L2 2952 3373 -2 1 1016 950 249 34 5 chr4 56562960 56563166 -99066954 - B3 SINE B2 -4 212 1 1 1016 192 40 0 0 chr4 56563300 56563325 -99066795 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1 1016 318 253 22 33 chr4 56563649 56563739 -99066381 + G-rich Low_complexity Low_complexity 3 91 0 1 1016 3767 60 31 11 chr4 56563934 56564417 -99065703 + L1_Mus1 LINE L1 6101 6567 0 1 1016 1311 41 0 0 chr4 56564417 56564564 -99065556 + B1_Mus2 SINE Alu 1 147 0 1 1016 211 70 70 0 chr4 56564564 56564582 -99065538 + (TAAAAA)n Simple_repeat Simple_repeat 4 21 0 1 1016 217 360 19 39 chr4 56565477 56565633 -99064487 - MIRb SINE MIR -60 208 56 1 1016 434 254 204 28 chr4 56565911 56566102 -99064018 - B4 SINE B4 -67 225 1 1 1016 827 251 26 36 chr4 56566128 56566140 -99063980 - B3A SINE B2 -6 192 182 1 1016 441 0 0 0 chr4 56566140 56566189 -99063931 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1016 827 251 26 36 chr4 56566189 56566370 -99063750 - B3A SINE B2 -17 181 1 1 1016 238 167 38 100 chr4 56566421 56566501 -99063619 - MIRb SINE MIR -31 237 163 1 1016 181 300 0 39 chr4 56566529 56566581 -99063539 - L2b LINE L2 -23 3352 3303 1 1016 37409 24 44 7 chr4 56566945 56573103 -99057017 - L1Md_A LINE L1 -2 6580 198 1 1016 320 349 220 11 chr4 56573221 56573580 -99056540 + Tigger13a DNA MER2_type 315 748 -23 1 1016 545 220 167 67 chr4 56573641 56573821 -99056299 - B3A SINE B2 0 198 1 1 1016 25705 147 26 44 chr4 56574588 56579869 -99050251 + Lx3_Mus LINE L1 889 6088 -962 1 1016 1033 58 11 17 chr4 56580379 56580553 -99049567 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 1 1016 990 167 0 0 chr4 56580565 56580745 -99049375 + GA-rich Low_complexity Low_complexity 1 180 0 1 1016 612 0 0 0 chr4 56580748 56580816 -99049304 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1 1016 558 79 0 0 chr4 56580908 56580984 -99049136 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1016 4395 83 88 3 chr4 56581424 56582064 -99048056 + Lx3_Mus LINE L1 6292 6985 -24 1 1016 198 0 0 0 chr4 56582064 56582086 -99048034 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1016 313 175 53 0 chr4 56582207 56582264 -99047856 + HAL1-3A_ME LINE L1 1975 2034 -824 1 1016 196 376 9 0 chr4 56582481 56582590 -99047530 + MIRb SINE MIR 132 241 -27 1 1016 258 32 0 0 chr4 56582829 56582860 -99047260 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1016 346 135 12 33 chr4 56582869 56582942 -99047178 - B2_Mm2 SINE B2 -95 121 47 1 1016 38199 25 2 7 chr4 56583027 56588253 -99041867 + L1Md_A LINE L1 391 5586 -297 1 1016 9116 26 1 0 chr4 56588253 56589248 -99040872 + L1Md_A LINE L1 5587 6582 0 1 1016 1156 79 0 0 chr4 56589260 56589412 -99040708 - B2_Mm2 SINE B2 -43 152 1 1 1016 510 17 0 0 chr4 56590385 56590444 -99039676 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1016 747 289 98 50 chr4 56590450 56590727 -99039393 - B4A SINE B4 -2 290 1 1 1016 185 348 172 11 chr4 56591847 56592027 -99038093 + MIRb SINE MIR 44 252 -16 1 1016 219 373 67 18 chr4 56592062 56592226 -99037894 + MIRc SINE MIR 70 241 -27 1 1016 355 221 0 55 chr4 56592471 56592562 -99037558 - RSINE1 SINE B4 -7 158 73 1 1016 644 206 0 7 chr4 56592727 56592874 -99037246 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 1016 374 0 22 0 chr4 56592874 56592920 -99037200 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1016 258 32 0 0 chr4 56593728 56593759 -99036361 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1016 398 343 96 50 chr4 56593858 56594140 -99035980 + MLT1J LTR MaLR 38 332 -180 1 1016 921 270 94 133 chr4 56594201 56594842 -99035278 + RLTR18 LTR ERVK 1 616 0 1 1016 522 0 0 0 chr4 56595245 56595303 -99034817 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1016 375 23 0 0 chr4 56595303 56595346 -99034774 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1016 812 236 14 0 chr4 56596078 56596218 -99033902 + RSINE1 SINE B4 3 144 -21 1 1016 276 102 0 0 chr4 56597340 56597389 -99032731 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1016 1187 296 33 11 chr4 56597778 56598143 -99031977 - MTE2b LTR MaLR -6 373 1 1 1016 8214 42 1 2 chr4 56598519 56599692 -99030428 - L1Md_F2 LINE L1 0 6582 5412 1 1016 1514 63 16 21 chr4 56599971 56600164 -99029956 - B2_Mm2 SINE B2 -1 194 3 1 1016 789 281 25 57 chr4 56600536 56600815 -99029305 + B4A SINE B4 5 274 -18 1 1016 228 294 14 14 chr4 56600836 56600905 -99029215 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1016 448 251 100 57 chr4 56602253 56602412 -99027708 + MER5A DNA MER1_type 2 167 -11 1 1016 1144 142 141 10 chr4 56602522 56602721 -99027399 + URR1A DNA MER1_type 2 226 0 1 1016 476 332 114 40 chr4 56602754 56603105 -99027015 + L2a LINE L2 3050 3426 0 1 1016 345 24 0 0 chr4 56604219 56604261 -99025859 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1016 198 0 0 0 chr4 56604438 56604460 -99025660 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1016 672 255 0 45 chr4 56604503 56604519 -99025601 + B1_Mur2 SINE Alu 1 16 -133 1 1016 1793 132 127 7 chr4 56604519 56604810 -99025310 - ORR1A3 LTR MaLR 0 326 1 1 1016 672 255 0 45 chr4 56604810 56604949 -99025171 + B1_Mur2 SINE Alu 17 149 0 1 1016 573 64 0 0 chr4 56604955 56605033 -99025087 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1016 621 272 111 52 chr4 56605256 56605562 -99024558 + Lx8 LINE L1 7148 7471 -2 1 1016 817 153 113 0 chr4 56605623 56605747 -99024373 + B1_Mur4 SINE Alu 1 138 -12 1 1016 243 0 0 0 chr4 56605754 56605781 -99024339 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1016 461 291 19 0 chr4 56605810 56605913 -99024207 + PB1D10 SINE Alu 6 110 -7 1 1016 404 341 89 33 chr4 56606248 56606518 -99023602 + LTR16B2 LTR ERVL 28 312 -150 1 1016 517 272 23 23 chr4 56607699 56607827 -99022293 + RSINE1 SINE B4 19 146 -19 1 1016 198 258 0 0 chr4 56607862 56607924 -99022196 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1016 262 391 20 7 chr4 56608218 56608370 -99021750 + L2c LINE L2 3056 3209 -178 1 1016 2357 165 5 0 chr4 56608564 56608933 -99021187 + ORR1D1 LTR MaLR 1 371 -3 1 1016 566 369 70 15 chr4 56609637 56609978 -99020142 - L4 LINE RTE -239 1790 1431 1 1016 567 310 119 38 chr4 56610174 56610532 -99019588 - MLT1J LTR MaLR -70 374 17 1 1016 23 0 0 0 chr4 56610728 56610751 -99019369 + AT_rich Low_complexity Low_complexity 1 23 0 1 1016 399 384 54 14 chr4 56610815 56611095 -99019025 - L4 LINE RTE -1126 903 613 1 1016 324 0 0 0 chr4 56611139 56611175 -99018945 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1016 229 342 203 16 chr4 56611296 56611483 -99018637 - L4 LINE RTE -1699 330 109 1 1016 335 312 38 6 chr4 56611707 56611865 -99018255 - MIRb SINE MIR -14 254 92 1 1016 243 0 0 0 chr4 56612080 56612107 -99018013 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1 1016 944 225 247 9 chr4 56612334 56612666 -99017454 + MTD LTR MaLR 1 411 -8 1 1016 810 347 88 25 chr4 56612973 56613499 -99016621 - MER97c DNA MER1_type? -448 642 84 1 1016 1063 259 96 28 chr4 56614676 56615030 -99015090 - MTE2a LTR MaLR -1 378 1 1 1016 2958 39 6 0 chr4 56616261 56616621 -99013499 - L1Md_F2 LINE L1 0 6582 6221 1 1016 378 0 0 0 chr4 56616841 56616883 -99013237 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1016 207 297 105 38 chr4 56617389 56617522 -99012598 + MIRc SINE MIR 110 251 -17 1 1016 303 386 47 11 chr4 56617872 56618063 -99012057 - L2a LINE L2 -4 3422 3225 1 1016 476 281 37 1 chr4 56618911 56619075 -99011045 + MIRb SINE MIR 24 201 -67 1 1016 204 346 132 19 chr4 56620234 56620393 -99009727 - MIRb SINE MIR -22 246 70 1 1016 869 203 35 48 chr4 56621422 56621650 -99008470 - URR1B DNA MER1_type 0 225 1 1 1016 425 326 43 0 chr4 56622354 56622495 -99007625 - MER20 DNA MER1_type -69 150 4 1 1017 200 310 159 13 chr4 56623777 56623934 -99006186 + MER5A DNA MER1_type 9 188 -1 1 1017 268 330 10 10 chr4 56623968 56624072 -99006048 - L2a LINE L2 0 3426 3323 1 1017 316 308 48 14 chr4 56624757 56624902 -99005218 + Tigger8 DNA MER2_type 353 502 -164 1 1017 244 274 0 16 chr4 56625082 56625145 -99004975 + GA-rich Low_complexity Low_complexity 3 64 0 1 1017 302 162 0 66 chr4 56625165 56625271 -99004849 + GA-rich Low_complexity Low_complexity 1 99 0 1 1017 204 40 0 0 chr4 56625909 56625934 -99004186 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1017 654 276 103 49 chr4 56625984 56626354 -99003766 + L1MA9 LINE L1 5874 6263 -49 1 1017 196 343 0 0 chr4 56626399 56626469 -99003651 + MIRb SINE MIR 38 107 -161 1 1017 1012 315 63 26 chr4 56627549 56627979 -99002141 + MLT1C LTR MaLR 1 446 -21 1 1017 236 279 15 0 chr4 56628113 56628181 -99001939 - ID4 SINE ID -10 73 5 1 1017 987 306 4 20 chr4 56628922 56629154 -99000966 + B4 SINE B4 45 273 -19 1 1017 333 82 0 0 chr4 56629154 56629203 -99000917 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1017 987 306 4 20 chr4 56629203 56629220 -99000900 + B4 SINE B4 274 290 -2 1 1017 677 261 65 33 chr4 56630099 56630425 -98999695 - ORR1E LTR MaLR -8 371 8 1 1017 733 278 0 57 chr4 56631720 56631930 -98998190 + B3A SINE B2 1 198 0 1 1017 455 288 86 31 chr4 56632658 56632880 -98997240 - MIRc SINE MIR -31 237 4 1 1017 996 110 230 27 chr4 56633348 56633535 -98996585 - URR1B DNA MER1_type 0 225 1 1 1017 273 249 78 0 chr4 56636845 56636931 -98993189 + ID4_ SINE ID 1 93 -59 1 1017 700 238 16 9 chr4 56637328 56637545 -98992575 + B3A SINE B2 1 216 0 1 1017 334 343 65 60 chr4 56637735 56637983 -98992137 - MIRb SINE MIR -19 249 1 1 1017 1460 12 0 0 chr4 56638105 56638272 -98991848 + L1Md_A LINE L1 6416 6582 0 1 1017 360 64 0 0 chr4 56638316 56638363 -98991757 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 2 1017 636 248 90 17 chr4 56638363 56638587 -98991533 - Lx3C LINE L1 -12 6964 6724 2 1017 1679 202 3 0 chr4 56638587 56638879 -98991241 + Lx4B LINE L1 6342 6634 -424 2 1017 570 29 0 0 chr4 56639258 56639326 -98990794 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 2 1017 189 107 0 0 chr4 56640153 56640181 -98989939 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1017 225 314 3 18 chr4 56640404 56640516 -98989604 + MIR SINE MIR 64 175 -93 2 1017 932 85 7 0 chr4 56640552 56640705 -98989415 + (TC)n Simple_repeat Simple_repeat 2 155 0 2 1017 622 34 0 22 chr4 56640705 56640796 -98989324 + (TG)n Simple_repeat Simple_repeat 1 89 0 2 1017 526 274 57 60 chr4 56640829 56641112 -98989008 - B4A SINE B4 -10 282 1 2 1017 297 191 14 14 chr4 56641401 56641470 -98988650 - LTR16B2 LTR ERVL -105 357 289 2 1017 293 273 200 7 chr4 56641562 56641702 -98988418 - LTR16B2 LTR ERVL -292 170 4 2 1017 514 326 101 7 chr4 56642249 56642527 -98987593 + MLT1E LTR MaLR 350 653 0 2 1017 329 277 0 0 chr4 56642819 56642906 -98987214 - ID4_ SINE ID -48 104 18 2 1017 498 216 43 0 chr4 56642947 56643063 -98987057 - B1F SINE Alu -16 133 13 2 1017 261 233 17 0 chr4 56643016 56643076 -98987044 - B4A SINE B4 -147 145 85 2 1017 270 342 20 7 chr4 56644018 56644165 -98985955 - MER5A1 DNA MER1_type 0 166 18 2 1017 199 354 140 9 chr4 56644327 56644441 -98985679 - MIR SINE MIR -62 146 18 2 1017 1138 288 63 37 chr4 56644496 56645087 -98985033 + L1M5 LINE L1 3611 4216 -1930 2 1017 537 301 92 59 chr4 56645147 56645419 -98984701 + B4 SINE B4 1 281 -11 2 1017 288 91 0 0 chr4 56645481 56645525 -98984595 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1017 266 344 39 30 chr4 56645752 56645986 -98984134 + L1M5 LINE L1 4592 4827 -1319 2 1017 711 80 0 0 chr4 56646180 56646292 -98983828 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1017 255 171 95 54 chr4 56647926 56648000 -98982120 + ID4 SINE ID 1 77 -6 2 1017 1031 236 38 24 chr4 56648375 56648662 -98981458 + Lx7 LINE L1 5614 5904 -1792 2 1017 312 27 0 0 chr4 56648685 56648722 -98981398 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1017 22 0 0 0 chr4 56648936 56648958 -98981162 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 375 156 41 10 chr4 56649002 56649099 -98981021 + GA-rich Low_complexity Low_complexity 3 102 0 2 1017 871 174 11 0 chr4 56649097 56649275 -98980845 + G-rich Low_complexity Low_complexity 1 180 0 2 1017 727 273 6 44 chr4 56649792 56649810 -98980310 - B3A SINE B2 -16 182 167 2 1017 639 0 0 0 chr4 56649810 56649881 -98980239 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1017 727 273 6 44 chr4 56649881 56650042 -98980078 - B3A SINE B2 -32 166 10 2 1017 296 358 16 8 chr4 56651336 56651460 -98978660 + MIRb SINE MIR 86 210 -58 2 1017 279 0 0 0 chr4 56652376 56652407 -98977713 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1017 732 249 44 0 chr4 56652929 56653110 -98977010 - MER5A DNA MER1_type 0 189 1 2 1017 205 232 0 28 chr4 56653554 56653625 -98976495 + GA-rich Low_complexity Low_complexity 2 70 0 2 1017 440 271 70 12 chr4 56653819 56653991 -98976129 - Lx8 LINE L1 -3 7470 7289 2 1017 237 320 29 0 chr4 56654410 56654513 -98975607 - L1M LINE L1 -760 5364 5259 2 1017 360 287 6 11 chr4 56654605 56654715 -98975405 - PB1D10 SINE Alu -8 112 1 2 1017 386 154 13 0 chr4 56654729 56654807 -98975313 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1017 744 291 127 8 chr4 56654810 56655090 -98975030 - B4 SINE B4 -13 279 1 2 1017 374 200 40 40 chr4 56655688 56655813 -98974307 + Lx4B LINE L1 6933 7057 -1 2 1017 345 159 0 0 chr4 56656264 56656327 -98973793 + A-rich Low_complexity Low_complexity 1 63 0 2 1017 494 333 19 0 chr4 56658374 56658530 -98971590 + RSINE1 SINE B4 3 161 -4 2 1017 708 100 0 0 chr4 56658563 56658683 -98971437 + (TG)n Simple_repeat Simple_repeat 2 121 0 2 1017 442 228 16 0 chr4 56658686 56658809 -98971311 + Lx9 LINE L1 7517 7641 -3 2 1017 1168 55 7 7 chr4 56658813 56658961 -98971159 + B1_Mus1 SINE Alu 1 148 0 2 1017 249 33 0 0 chr4 56658963 56658993 -98971127 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 1017 222 118 0 0 chr4 56659226 56659260 -98970860 + (CCA)n Simple_repeat Simple_repeat 1 34 0 2 1017 6954 64 19 0 chr4 56659361 56659445 -98970675 - MusHAL1 LINE L1 -666 2046 1963 2 1017 1001 79 0 0 chr4 56659445 56659572 -98970548 - B1_Mm SINE Alu -19 128 2 2 1017 6954 64 19 0 chr4 56659572 56660409 -98969711 - MusHAL1 LINE L1 -750 1962 1108 2 1017 2647 32 3 17 chr4 56660392 56660741 -98969379 - MusHAL1 LINE L1 -2204 508 165 2 1017 4868 140 1 5 chr4 56660741 56661495 -98968625 + Lx LINE L1 5904 6654 0 2 1017 826 280 10 10 chr4 56661520 56661722 -98968398 + ID_B1 SINE B4 3 204 -20 2 1017 3368 40 2 8 chr4 56661873 56662271 -98967849 + MTA_Mm LTR MaLR 1 396 0 2 1017 447 95 0 51 chr4 56662271 56662349 -98967771 + MTA_Mm-int LTR MaLR 1 74 -1024 2 1017 417 39 0 0 chr4 56662445 56662496 -98967624 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1017 295 283 32 48 chr4 56663595 56663611 -98966509 - B4A SINE B4 -47 245 229 2 1017 485 16 16 0 chr4 56663611 56663673 -98966447 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1017 400 310 34 27 chr4 56663674 56663823 -98966297 - RSINE1 SINE B4 -15 150 1 2 1017 295 283 32 48 chr4 56663823 56663930 -98966190 - B4A SINE B4 -64 228 122 2 1017 240 309 94 16 chr4 56664291 56664419 -98965701 - MIRb SINE MIR -40 228 91 2 1017 455 177 0 10 chr4 56664715 56664812 -98965308 + GA-rich Low_complexity Low_complexity 4 99 0 2 1017 1126 78 6 12 chr4 56664816 56664984 -98965136 + (GAAA)n Simple_repeat Simple_repeat 1 167 0 2 1017 579 51 0 0 chr4 56664984 56665062 -98965058 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 2 1017 398 314 0 100 chr4 56665081 56665251 -98964869 + RSINE1 SINE B4 3 155 -10 2 1017 296 179 13 0 chr4 56665262 56665340 -98964780 + GA-rich Low_complexity Low_complexity 1 79 0 2 1017 3379 57 12 2 chr4 56666247 56666672 -98963448 - L1Md_F2 LINE L1 0 6582 6154 2 1017 767 210 0 6 chr4 56666705 56666882 -98963238 + CT-rich Low_complexity Low_complexity 2 177 0 2 1017 186 222 22 11 chr4 56666909 56667000 -98963120 + CT-rich Low_complexity Low_complexity 6 97 0 2 1017 604 286 19 130 chr4 56667866 56668012 -98962108 - B4A SINE B4 -57 235 89 2 1017 441 54 0 0 chr4 56668012 56668068 -98962052 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 1017 604 286 19 130 chr4 56668068 56668182 -98961938 - B4A SINE B4 -204 88 4 2 1017 956 327 47 19 chr4 56668578 56668937 -98961183 + MLT1J LTR MaLR 22 390 -122 2 1017 264 350 41 55 chr4 56669444 56669589 -98960531 + L2a LINE L2 3272 3414 -12 2 1017 651 269 41 0 chr4 56669589 56669760 -98960360 + B3A SINE B2 2 179 -19 2 1017 315 0 0 0 chr4 56669784 56669819 -98960301 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1017 427 286 106 14 chr4 56670564 56670706 -98959414 + RSINE1 SINE B4 11 165 0 2 1017 324 263 153 95 chr4 56670742 56670931 -98959189 - MLT1A1 LTR MaLR -208 200 1 2 1017 220 171 0 0 chr4 56671782 56671817 -98958303 + polypurine Low_complexity Low_complexity 2 36 0 2 1017 507 302 167 65 chr4 56671817 56672111 -98958009 + MLT1C LTR MaLR 180 503 -2 2 1017 646 82 0 0 chr4 56672746 56672831 -98957289 + B1_Mus2 SINE Alu 62 146 -1 2 1017 377 323 18 35 chr4 56674038 56674208 -98955912 + L1MCc LINE L1 40 206 -6217 2 1017 608 311 46 49 chr4 56675128 56675453 -98954667 + ORR1E LTR MaLR 4 312 -58 2 1017 284 273 13 13 chr4 56675786 56675864 -98954256 + B1F SINE Alu 65 142 -7 2 1017 3183 238 97 101 chr4 56675886 56677087 -98953033 + Lx8 LINE L1 6277 7473 0 2 1017 21 36 0 0 chr4 56677089 56677117 -98953003 + AT_rich Low_complexity Low_complexity 1 28 0 2 1017 300 256 0 0 chr4 56677117 56677203 -98952917 + (CATA)n Simple_repeat Simple_repeat 2 87 0 2 1017 403 252 10 10 chr4 56677203 56677307 -98952813 + BC1_Mm scRNA scRNA 3 106 -46 2 1017 486 250 51 63 chr4 56678050 56678225 -98951895 - MER113 DNA MER1_type -52 469 297 2 1017 285 284 14 0 chr4 56678293 56678367 -98951753 + CT-rich Low_complexity Low_complexity 6 80 0 2 1017 350 290 88 33 chr4 56678370 56678552 -98951568 - MER113 DNA MER1_type -286 235 44 2 1017 959 228 109 4 chr4 56678651 56678908 -98951212 + Lx9 LINE L1 6437 6720 -924 2 1017 1050 81 0 0 chr4 56678908 56679044 -98951076 - B1_Mus1 SINE Alu -11 137 2 2 1017 342 259 0 0 chr4 56679044 56679061 -98951059 + Lx9 LINE L1 6721 6737 -907 2 1017 2286 211 14 72 chr4 56679053 56679605 -98950515 + Lx9 LINE L1 6943 7462 -182 2 1017 237 108 0 0 chr4 56679605 56679642 -98950478 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1017 24 0 0 0 chr4 56679642 56679666 -98950454 + AT_rich Low_complexity Low_complexity 1 24 0 2 1017 379 294 0 0 chr4 56679780 56679865 -98950255 + RSINE1 SINE B4 5 89 -76 2 1017 1196 36 0 0 chr4 56679871 56680009 -98950111 + B1_Mus2 SINE Alu 1 138 -9 2 1017 659 120 0 9 chr4 56680023 56680132 -98949988 + (GGA)n Simple_repeat Simple_repeat 2 109 0 2 1017 1260 100 6 11 chr4 56680154 56680336 -98949784 + B2_Mm2 SINE B2 5 185 -10 2 1017 227 103 26 0 chr4 56680368 56680407 -98949713 + (CATA)n Simple_repeat Simple_repeat 4 43 0 2 1017 302 184 0 7 chr4 56681102 56681167 -98948953 + PB1D10 SINE Alu 59 120 0 2 1017 405 323 145 30 chr4 56681180 56681346 -98948774 - MER58A DNA MER1_type -11 213 29 2 1017 316 237 151 0 chr4 56681782 56681875 -98948245 - PB1D10 SINE Alu -9 108 2 2 1017 669 209 70 28 chr4 56681941 56682084 -98948036 - B1_Mur2 SINE Alu 0 149 1 2 1017 2065 78 3 57 chr4 56682084 56682385 -98947735 + ORR1A2 LTR MaLR 2 286 -41 2 1017 4521 56 2 10 chr4 56682385 56682961 -98947159 + L1Md_F2 LINE L1 5015 5585 -298 2 1017 7898 52 12 14 chr4 56682962 56683959 -98946161 + L1Md_F2 LINE L1 5587 6581 -1 2 1017 224 30 0 29 chr4 56683962 56683996 -98946124 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1017 396 43 0 0 chr4 56683996 56684043 -98946077 + ORR1A2 LTR MaLR 340 386 -8 2 1017 193 278 63 70 chr4 56684220 56684363 -98945757 - L2a LINE L2 -96 3330 3189 2 1017 1681 162 29 10 chr4 56685004 56685316 -98944804 + L1_Mm LINE L1 4970 5287 -596 2 1017 6364 96 3 18 chr4 56685318 56686229 -98943891 + L1_Mus3 LINE L1 5741 6638 0 3 1017 1776 247 82 14 chr4 56686318 56686711 -98943409 + Lx8 LINE L1 6342 6765 -708 3 1017 501 97 0 0 chr4 56686711 56686783 -98943337 + (TTG)n Simple_repeat Simple_repeat 1 72 0 3 1017 1776 247 82 14 chr4 56686783 56686829 -98943291 + Lx8 LINE L1 6766 6811 -662 3 1017 610 228 88 0 chr4 56687208 56687344 -98942776 + B1_Mur3 SINE Alu 1 148 -1 3 1017 477 0 0 0 chr4 56687477 56687530 -98942590 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1017 263 364 54 18 chr4 56688390 56688502 -98941618 - MIRb SINE MIR -106 162 47 3 1017 215 196 0 38 chr4 56688809 56688862 -98941258 + T-rich Low_complexity Low_complexity 4 54 0 3 1017 366 314 119 0 chr4 56688942 56689060 -98941060 - RSINE1 SINE B4 -21 144 13 3 1017 291 274 25 114 chr4 56689383 56689663 -98940457 + L1M2 LINE L1 1637 1891 -4958 3 1017 1189 283 156 12 chr4 56689691 56690256 -98939864 + L1M2 LINE L1 4673 5318 -1527 3 1017 2533 212 81 78 chr4 56690251 56691401 -98938719 - RMER1B Other Other -2 1064 3 3 1017 875 200 53 29 chr4 56691956 56692162 -98937958 + B3 SINE B2 1 211 -5 3 1017 629 279 54 14 chr4 56692176 56692374 -98937746 + Lx5 LINE L1 4617 4824 -1056 3 1017 369 0 0 0 chr4 56692374 56692415 -98937705 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1017 629 279 54 14 chr4 56692415 56692492 -98937628 + Lx5 LINE L1 4825 4903 -977 3 1017 2512 268 111 86 chr4 56692494 56693859 -98936261 + Lx5 LINE L1 5653 7050 0 3 1017 345 310 104 52 chr4 56693927 56694138 -98935982 + L1M2 LINE L1 5709 5930 -915 3 1017 473 89 2 2 chr4 56694543 56694621 -98935499 - B2_Mm2 SINE B2 -18 177 102 3 1017 350 197 0 0 chr4 56694701 56694762 -98935358 + tRNA-Ala-GCY_ tRNA tRNA 1 61 -14 3 1017 231 255 0 0 chr4 56695081 56695128 -98934992 + T-rich Low_complexity Low_complexity 1 47 0 3 1017 1241 52 0 0 chr4 56695640 56695794 -98934326 + B2_Mm2 SINE B2 2 155 -40 3 1017 378 0 0 0 chr4 56695794 56695836 -98934284 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1017 306 125 0 0 chr4 56695838 56695886 -98934234 + (GGA)n Simple_repeat Simple_repeat 3 50 0 3 1017 225 0 0 0 chr4 56695884 56695909 -98934211 + (TGG)n Simple_repeat Simple_repeat 2 26 0 3 1017 564 15 0 0 chr4 56696051 56696116 -98934004 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1017 2111 116 68 20 chr4 56697265 56697618 -98932502 + Lx2 LINE L1 6625 6994 -3 3 1017 186 43 0 0 chr4 56698072 56698095 -98932025 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1017 207 88 0 29 chr4 56698098 56698133 -98931987 + (CAGGG)n Simple_repeat Simple_repeat 1 34 0 3 1017 302 320 159 10 chr4 56698341 56698549 -98931571 - MIRb SINE MIR -21 247 9 3 1017 23 0 0 0 chr4 56699023 56699046 -98931074 + AT_rich Low_complexity Low_complexity 1 23 0 3 1017 228 100 0 0 chr4 56699506 56699546 -98930574 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1017 670 290 27 18 chr4 56699557 56699778 -98930342 - ID_B1 SINE B4 0 224 2 3 1017 583 244 29 15 chr4 56699786 56699923 -98930197 - B1F1 SINE Alu -2 147 9 3 1017 238 181 92 53 chr4 56700521 56700597 -98929523 - L1M4 LINE L1 -1375 4771 4693 3 1017 380 250 24 12 chr4 56700679 56700764 -98929356 + B4A SINE B4 3 88 -204 3 1017 352 253 21 52 chr4 56700756 56700852 -98929268 + B4A SINE B4 200 292 0 3 1017 785 230 118 0 chr4 56700877 56701038 -98929082 - B3 SINE B2 -36 180 1 3 1017 1213 21 0 0 chr4 56701063 56701205 -98928915 - MTA_Mm LTR MaLR -254 142 1 3 1017 9446 35 0 0 chr4 56701205 56702303 -98927817 - MTA_Mm-int LTR MaLR 0 1098 1 3 1017 3418 43 2 0 chr4 56702303 56702698 -98927422 - MTA_Mm LTR MaLR 0 396 1 3 1017 280 305 194 20 chr4 56702728 56703032 -98927088 - L2a LINE L2 -104 3322 2966 3 1017 1161 98 0 0 chr4 56703577 56704119 -98926001 + (TG)n Simple_repeat Simple_repeat 1 542 0 3 1017 822 244 22 17 chr4 56704122 56704139 -98925981 - B3 SINE B2 -33 183 169 3 1017 1203 72 0 0 chr4 56704139 56704319 -98925801 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1017 822 244 22 17 chr4 56704319 56704480 -98925640 - B3 SINE B2 -48 168 4 3 1017 441 0 0 0 chr4 56704839 56704888 -98925232 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1017 560 297 16 0 chr4 56704905 56705033 -98925087 + RSINE1 SINE B4 7 136 -29 3 1017 1947 153 84 3 chr4 56705341 56705676 -98924444 - ORR1B2 LTR MaLR -5 362 1 3 1017 227 368 11 0 chr4 56706755 56706850 -98923270 + B1F SINE Alu 22 117 -32 3 1017 618 51 0 0 chr4 56707037 56707115 -98923005 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1017 562 172 30 76 chr4 56707128 56707260 -98922860 + B1_Mur4 SINE Alu 25 150 0 3 1017 302 386 52 52 chr4 56707351 56707564 -98922556 - L4 LINE RTE -262 1767 1555 3 1017 318 307 196 30 chr4 56707612 56707877 -98922243 + MLT1H LTR MaLR 241 549 0 3 1017 537 320 55 5 chr4 56707987 56708188 -98921932 + MLT1F2 LTR MaLR 1 211 -349 3 1017 696 81 48 30 chr4 56708189 56708355 -98921765 + C-rich Low_complexity Low_complexity 4 172 0 3 1017 550 334 31 159 chr4 56708355 56708775 -98921345 + MLT1F2 LTR MaLR 192 557 -3 3 1017 631 266 0 0 chr4 56708868 56709011 -98921109 + B1F SINE Alu 1 143 -6 3 1017 268 123 369 0 chr4 56709155 56709181 -98920939 + RMER17B LTR ERVK 372 397 -561 3 1017 587 14 14 0 chr4 56709181 56709253 -98920867 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 1017 268 123 369 0 chr4 56709253 56709291 -98920829 + RMER17B LTR ERVK 398 459 -499 3 1017 239 286 39 13 chr4 56709524 56709602 -98920518 - ORR1D1 LTR MaLR -285 89 10 3 1017 603 295 60 13 chr4 56710025 56710176 -98919944 + RSINE1 SINE B4 6 163 -2 3 1017 237 378 46 46 chr4 56710176 56710219 -98919901 + B3A SINE B2 5 198 0 3 1017 531 176 15 112 chr4 56710248 56710272 -98919848 + MT2B LTR ERVL 144 154 -447 3 1017 1086 90 0 0 chr4 56710272 56710417 -98919703 + B1_Mus2 SINE Alu 3 147 0 3 1017 794 229 118 36 chr4 56710723 56710880 -98919240 + B3 SINE B2 1 180 -36 3 1017 400 87 43 0 chr4 56710880 56710949 -98919171 + (CATA)n Simple_repeat Simple_repeat 3 74 0 3 1017 794 229 118 36 chr4 56710949 56710969 -98919151 + B3 SINE B2 181 198 -18 3 1017 866 44 0 17 chr4 56710969 56711085 -98919035 + (GGAAA)n Simple_repeat Simple_repeat 1 114 0 3 1017 794 229 118 36 chr4 56711085 56711101 -98919019 + B3 SINE B2 199 210 -6 3 1017 250 326 41 31 chr4 56711306 56711404 -98918716 + MIR3 SINE MIR 103 201 -7 3 1017 797 56 9 0 chr4 56711422 56711529 -98918591 + (GA)n Simple_repeat Simple_repeat 1 108 0 3 1017 391 295 36 71 chr4 56712109 56712204 -98917916 - L1ME4a LINE L1 -190 5934 5842 3 1017 841 170 66 33 chr4 56712204 56712386 -98917734 - B2_Mm2 SINE B2 -7 188 1 3 1017 391 295 36 71 chr4 56712386 56712458 -98917662 - L1ME4a LINE L1 -283 5841 5773 3 1017 232 273 0 43 chr4 56712466 56712535 -98917585 - MLT1G3 LTR MaLR -301 294 229 3 1017 24 0 0 0 chr4 56712669 56712693 -98917427 + AT_rich Low_complexity Low_complexity 1 24 0 3 1017 397 288 149 14 chr4 56713906 56714114 -98916006 - RMER12 LTR ERVK -334 988 753 3 1017 277 222 19 0 chr4 56714100 56714154 -98915966 + B4A SINE B4 233 287 -5 3 1017 1379 71 0 42 chr4 56714356 56714547 -98915573 - B2_Mm2 SINE B2 -9 186 4 3 1017 573 240 67 22 chr4 56714547 56714726 -98915394 + RMER1A Other Other 844 1030 0 3 1017 540 223 71 0 chr4 56714731 56714843 -98915277 - MTD LTR MaLR -299 120 1 3 1017 182 77 18 88 chr4 56714869 56714926 -98915194 + A-rich Low_complexity Low_complexity 2 54 0 3 1017 242 216 0 75 chr4 56715606 56715686 -98914434 + GA-rich Low_complexity Low_complexity 5 78 0 3 1017 238 316 13 38 chr4 56715741 56715820 -98914300 - B1F SINE Alu -15 134 58 3 1017 22 0 0 54 chr4 56715825 56715842 -98914278 + AT_rich Low_complexity Low_complexity 1 16 0 3 1017 216 0 0 0 chr4 56715842 56715866 -98914254 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1017 22 0 0 54 chr4 56715866 56715885 -98914235 + AT_rich Low_complexity Low_complexity 1 19 0 3 1017 39 0 0 0 chr4 56715907 56715946 -98914174 + AT_rich Low_complexity Low_complexity 1 39 0 3 1017 192 278 32 43 chr4 56716218 56716312 -98913808 - L2 LINE L2 -561 2858 2766 3 1017 2266 151 76 8 chr4 56717234 56717628 -98912492 + MTC LTR MaLR 1 421 0 3 1017 525 272 80 7 chr4 56717849 56717986 -98912134 + ID_B1 SINE B4 78 224 0 3 1017 653 66 0 11 chr4 56718000 56718092 -98912028 + (GGGA)n Simple_repeat Simple_repeat 3 93 0 3 1017 393 299 23 60 chr4 56718472 56718689 -98911431 - Lx8 LINE L1 0 7473 7265 3 1017 650 206 38 49 chr4 56718685 56718869 -98911251 - Lx8 LINE L1 -392 7081 6900 3 1017 194 136 0 22 chr4 56719892 56719937 -98910183 + CT-rich Low_complexity Low_complexity 2 45 0 3 1017 207 328 0 0 chr4 56720007 56720065 -98910055 + (CATG)n Simple_repeat Simple_repeat 3 60 0 3 1017 292 190 52 0 chr4 56720823 56720881 -98909239 + RSINE1 SINE B4 42 102 -63 3 1017 25 31 0 0 chr4 56720881 56720913 -98909207 + AT_rich Low_complexity Low_complexity 1 32 0 3 1017 580 243 127 81 chr4 56722182 56722379 -98907741 + B4A SINE B4 4 209 -83 3 1017 846 227 65 91 chr4 56722347 56722623 -98907497 + B4A SINE B4 24 292 0 3 1017 330 214 0 0 chr4 56722623 56722707 -98907413 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 1017 387 252 0 0 chr4 56722690 56722801 -98907319 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 1017 255 208 0 0 chr4 56722803 56722851 -98907269 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1017 702 153 380 0 chr4 56724255 56724418 -98905702 - URR1B DNA MER1_type 0 225 1 3 1017 216 208 20 40 chr4 56724438 56724488 -98905632 - L2c LINE L2 -241 3146 3098 3 1017 618 259 89 36 chr4 56724707 56724875 -98905245 + B4A SINE B4 3 179 -113 3 1017 210 26 0 71 chr4 56724889 56724931 -98905189 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1017 313 194 90 0 chr4 56724978 56725045 -98905075 + Lx9 LINE L1 6959 7031 -613 3 1017 1906 179 17 33 chr4 56725045 56725404 -98904716 - ORR1D1 LTR MaLR 0 374 22 3 1017 21 36 0 0 chr4 56725544 56725572 -98904548 + AT_rich Low_complexity Low_complexity 1 28 0 3 1017 489 34 0 0 chr4 56725734 56725793 -98904327 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1017 1215 244 56 0 chr4 56725971 56726258 -98903862 + Lx8 LINE L1 6229 6531 -942 3 1017 819 20 0 10 chr4 56726263 56726362 -98903758 - MTB LTR MaLR 0 400 303 3 1017 1265 293 107 27 chr4 56726398 56726886 -98903234 + Lx8 LINE L1 6946 7472 -1 3 1017 848 236 10 24 chr4 56726906 56727114 -98903006 - Lx6 LINE L1 -26 7434 7230 4 1017 306 159 0 0 chr4 56727115 56727159 -98902961 + tRNA-Met_ tRNA tRNA 1 44 -32 4 1017 4033 126 67 17 chr4 56727284 56728377 -98901743 + Lx5 LINE L1 5237 6403 -647 4 1017 388 267 58 29 chr4 56728581 56728685 -98901435 - ID_B1 SINE B4 -36 188 82 4 1017 347 325 237 20 chr4 56730034 56730477 -98899643 + L2 LINE L2 2530 3068 -351 4 1017 838 267 9 38 chr4 56730547 56730757 -98899363 + B4A SINE B4 5 208 -84 4 1017 1067 171 66 70 chr4 56731260 56731487 -98898633 + URR1A DNA MER1_type 1 226 0 4 1017 190 324 12 75 chr4 56731658 56731738 -98898382 - L3 LINE CR1 -1238 3251 3177 4 1017 322 248 26 96 chr4 56734148 56734304 -98895816 - YREP_Mm Unknown Unknown -1485 327 183 4 1017 939 159 0 0 chr4 56734169 56734307 -98895813 + B1_Mur3 SINE Alu 10 147 -2 4 1017 406 210 226 0 chr4 56734453 56734577 -98895543 + B3A SINE B2 1 152 -46 4 1017 1168 124 23 0 chr4 56736293 56736470 -98893650 + B2_Mm2 SINE B2 1 181 -14 4 1017 435 85 163 18 chr4 56736513 56736617 -98893503 + B2_Mm2 SINE B2 47 183 -10 4 1017 319 357 99 43 chr4 56736620 56736857 -98893263 + L1ME3B LINE L1 5634 5892 -348 4 1017 1162 70 0 0 chr4 56736857 56737000 -98893120 + B1_Mm SINE Alu 5 147 0 4 1017 319 357 99 43 chr4 56737000 56737178 -98892942 + L1ME3B LINE L1 5893 6071 -169 4 1017 242 323 146 0 chr4 56737346 56737442 -98892678 + PB1D10 SINE Alu 1 110 -7 4 1017 707 204 153 0 chr4 56737565 56737722 -98892398 + ID_B1 SINE B4 2 182 -42 4 1017 441 286 7 87 chr4 56737745 56737883 -98892237 + RSINE1 SINE B4 11 137 -28 4 1017 460 56 14 14 chr4 56737888 56737961 -98892159 + (CATA)n Simple_repeat Simple_repeat 4 76 0 4 1017 402 289 125 0 chr4 56738170 56738298 -98891822 + B1F1 SINE Alu 1 144 -5 4 1017 200 167 21 0 chr4 56738304 56738352 -98891768 + GA-rich Low_complexity Low_complexity 3 51 0 4 1017 423 0 0 0 chr4 56738352 56738399 -98891721 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1017 257 228 20 71 chr4 56738901 56739000 -98891120 - ORR1D1 LTR MaLR -277 97 4 4 1017 263 350 61 10 chr4 56739556 56739752 -98890368 + LTR65 LTR ERV1 1 206 -463 4 1017 911 259 145 0 chr4 56739817 56740072 -98890048 - B4 SINE B4 0 292 1 4 1017 718 174 114 0 chr4 56740151 56740283 -98889837 - B1_Mm SINE Alu 0 147 1 4 1017 1764 174 41 25 chr4 56740358 56740676 -98889444 - Lx6 LINE L1 -173 7287 6965 4 1017 307 297 149 0 chr4 56740681 56740829 -98889291 + LTR65 LTR ERV1 210 379 -290 4 1017 366 140 107 0 chr4 56740864 56741164 -98888956 + (CCTG)n Simple_repeat Simple_repeat 1 332 0 4 1017 240 245 0 0 chr4 56741211 56741317 -98888803 + CT-rich Low_complexity Low_complexity 2 107 0 4 1017 441 326 97 8 chr4 56741355 56741602 -98888518 + LTR65 LTR ERV1 389 657 -12 4 1017 874 102 8 0 chr4 56741785 56741912 -98888208 - URR1B DNA MER1_type 0 225 98 4 1017 36754 47 8 0 chr4 56741913 56747310 -98882810 + L1Md_F LINE L1 186 5567 -316 4 1017 363 196 257 29 chr4 56747310 56747329 -98882791 - URR1B DNA MER1_type -97 128 111 4 1017 8635 29 2 0 chr4 56747329 56748322 -98881798 + L1Md_T LINE L1 5587 6581 -1 4 1017 363 196 257 29 chr4 56748322 56748407 -98881713 - URR1B DNA MER1_type -115 110 1 4 1017 777 215 106 11 chr4 56748592 56748780 -98881340 + B3 SINE B2 1 206 -10 4 1017 288 231 15 0 chr4 56749544 56749609 -98880511 - L1M4b LINE L1 -4595 2507 2442 4 1017 467 246 25 58 chr4 56749854 56749975 -98880145 - B1F SINE Alu -20 129 13 4 1017 342 229 8 121 chr4 56749977 56750033 -98880087 - L1M4b LINE L1 -5069 2265 2210 4 1017 2445 58 0 9 chr4 56750033 56750349 -98879771 - L1Md_F2 LINE L1 0 6582 6270 4 1017 342 229 8 121 chr4 56750349 56750416 -98879704 - L1M4b LINE L1 -5125 2209 2156 4 1017 479 268 30 67 chr4 56750522 56750686 -98879434 - RSINE1 SINE B4 -6 159 2 4 1017 322 229 142 29 chr4 56750702 56750864 -98879256 - L1M4b LINE L1 -5083 1926 1754 4 1017 580 238 161 32 chr4 56750913 56751161 -98878959 - B4A SINE B4 -12 280 1 4 1017 417 359 88 82 chr4 56751570 56751913 -98878207 - MER77 LTR ERVL -207 400 56 4 1017 226 310 115 39 chr4 56752051 56752155 -98877965 + MIRc SINE MIR 67 178 -90 4 1018 217 317 77 77 chr4 56755372 56755567 -98874553 + L2a LINE L2 2807 3001 -418 4 1018 237 296 165 118 chr4 56755817 56756139 -98873981 + L2a LINE L2 3090 3426 0 4 1018 825 217 80 0 chr4 56758136 56758311 -98871809 + RLTR14 LTR ERV1 191 379 -3 4 1018 671 298 5 32 chr4 56758311 56758498 -98871622 + RLTR14-int LTR ERV1 1 182 -5135 4 1018 238 286 25 38 chr4 56759491 56759571 -98870549 + MER20 DNA MER1_type 70 148 -71 4 1018 878 93 108 0 chr4 56759785 56759914 -98870206 + B1_Mus1 SINE Alu 5 147 -1 4 1018 829 101 337 0 chr4 56760037 56760206 -98869914 + URR1A DNA MER1_type 1 226 0 4 1018 1351 204 93 49 chr4 56760306 56760673 -98869447 + ORR1C2 LTR MaLR 2 384 0 4 1018 1412 111 0 0 chr4 56761265 56761455 -98868665 - B2_Mm2 SINE B2 -5 190 1 4 1018 605 152 52 35 chr4 56761522 56761638 -98868482 - B1_Mur2 SINE Alu 0 149 32 4 1018 232 263 117 13 chr4 56761575 56761652 -98868468 - 4.5SRNA scRNA scRNA -3 91 7 4 1018 1211 50 56 6 chr4 56762056 56762217 -98867903 - B2_Mm2 SINE B2 -25 170 2 4 1018 2127 157 43 0 chr4 56762719 56763089 -98867031 - ORR1B1 LTR MaLR -8 386 1 4 1018 1703 132 106 0 chr4 56763089 56763392 -98866728 - ORR1B1-int LTR MaLR 0 1509 1175 4 1018 27 0 0 0 chr4 56763655 56763682 -98866438 + AT_rich Low_complexity Low_complexity 1 27 0 4 1018 1090 205 19 5 chr4 56763684 56763890 -98866230 - B3 SINE B2 -7 209 1 4 1018 184 360 168 25 chr4 56763967 56764166 -98865954 - MIRc SINE MIR -19 249 41 4 1018 397 232 136 39 chr4 56764207 56764310 -98865810 - B1F1 SINE Alu -4 113 1 4 1018 684 251 84 0 chr4 56764812 56765003 -98865117 - B3 SINE B2 -8 208 2 4 1018 24 32 0 0 chr4 56765383 56765414 -98864706 + AT_rich Low_complexity Low_complexity 1 31 0 4 1018 677 12 12 0 chr4 56765522 56765604 -98864516 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 4 1018 269 263 78 29 chr4 56765604 56765706 -98864414 - PB1D10 SINE Alu -8 109 3 4 1018 213 39 0 0 chr4 56765821 56765847 -98864273 + (CCA)n Simple_repeat Simple_repeat 1 26 0 4 1018 457 293 85 67 chr4 56766548 56766771 -98863349 + ORR1E LTR MaLR 29 255 -104 4 1018 818 183 35 7 chr4 56767877 56768020 -98862100 + B1_Mur1 SINE Alu 2 148 -1 4 1018 21 36 0 0 chr4 56768574 56768602 -98861518 + AT_rich Low_complexity Low_complexity 1 28 0 4 1018 1044 186 22 52 chr4 56770416 56770494 -98859626 - URR1B DNA MER1_type 0 225 158 4 1018 1196 114 21 16 chr4 56770494 56770681 -98859439 - B2_Mm2 SINE B2 -7 188 1 4 1018 1044 186 22 52 chr4 56770681 56770834 -98859286 - URR1B DNA MER1_type -68 157 1 4 1018 410 288 144 0 chr4 56770889 56771000 -98859120 - RSINE1 SINE B4 -37 128 2 4 1018 823 179 0 7 chr4 56771451 56771592 -98858528 + B1_Mur1 SINE Alu 4 143 -6 4 1018 180 296 41 27 chr4 56772247 56772320 -98857800 + L4 LINE RTE 526 599 -1430 4 1018 813 263 68 182 chr4 56772976 56773669 -98856451 + RLTR18 LTR ERVK 1 614 -2 4 1018 838 187 0 7 chr4 56773967 56774118 -98856002 - B1_Mur4 SINE Alu 0 150 1 4 1018 964 160 0 0 chr4 56775412 56775562 -98854558 - B1_Mur4 SINE Alu 0 150 1 4 1018 278 254 96 43 chr4 56776110 56776314 -98853806 - L1M4 LINE L1 -823 5323 5088 4 1018 296 219 13 40 chr4 56776391 56776467 -98853653 + MER102c DNA MER1_type 53 126 -205 4 1018 403 250 73 0 chr4 56777223 56777347 -98852773 + L1MC LINE L1 2795 2927 -3219 4 1018 395 292 61 18 chr4 56777506 56777670 -98852450 + B4A SINE B4 122 292 0 4 1018 586 195 125 0 chr4 56778018 56778146 -98851974 - B3 SINE B2 -1 215 72 4 1018 1162 270 128 11 chr4 56778288 56778756 -98851364 + MT2A LTR ERVL 1 523 -10 4 1018 399 257 52 26 chr4 56778789 56778905 -98851215 + PB1D9 SINE Alu 1 119 -1 4 1018 284 232 83 74 chr4 56778950 56779071 -98851049 + RSINE1 SINE B4 44 165 0 4 1018 502 111 25 0 chr4 56779192 56779273 -98850847 + B1_Mur4 SINE Alu 60 142 -8 4 1018 1497 211 91 38 chr4 56779571 56779989 -98850131 + RMER10A LTR ERVL 1 440 -2 4 1018 623 185 242 45 chr4 56779996 56780194 -98849926 - RMER10A LTR ERVL -203 239 3 4 1018 180 0 0 0 chr4 56780943 56780963 -98849157 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1018 396 0 0 0 chr4 56782289 56782333 -98847787 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1018 485 225 184 3 chr4 56782859 56783034 -98847086 + B3A SINE B2 1 205 -11 4 1018 224 59 29 0 chr4 56783038 56783072 -98847048 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1018 641 209 372 33 chr4 56783138 56783405 -98846715 + MTD LTR MaLR 48 405 -14 4 1018 318 143 144 9 chr4 56784116 56784237 -98845883 + PB1D9 SINE Alu 1 145 -2 4 1018 186 43 0 0 chr4 56784264 56784287 -98845833 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1018 746 256 47 5 chr4 56784909 56785101 -98845019 + B4 SINE B4 32 231 -61 4 1018 691 258 96 5 chr4 56785424 56785611 -98844509 + ID_B1 SINE B4 7 210 -14 4 1018 183 156 0 0 chr4 56785636 56785668 -98844452 + GA-rich Low_complexity Low_complexity 1 32 0 4 1018 870 141 35 0 chr4 56787066 56787208 -98842912 + B1_Mus2 SINE Alu 1 147 0 4 1018 213 65 0 0 chr4 56787210 56787241 -98842879 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1018 22 0 0 0 chr4 56788657 56788679 -98841441 + AT_rich Low_complexity Low_complexity 1 22 0 4 1018 1365 73 17 6 chr4 56788679 56788857 -98841263 - B2_Mm2 SINE B2 -14 181 2 4 1018 578 316 10 39 chr4 56789207 56789411 -98840709 + B3A SINE B2 1 198 0 4 1018 787 256 119 24 chr4 56790219 56790687 -98839433 - RMER4B LTR ERVK -20 565 1 4 1018 1075 189 155 11 chr4 56791168 56791446 -98838674 + ORR1D1 LTR MaLR 56 373 -1 4 1018 217 293 17 0 chr4 56792185 56792243 -98837877 + ID SINE ID 3 61 -163 4 1018 429 239 75 23 chr4 56792959 56793092 -98837028 + B1F SINE Alu 1 140 -9 5 1018 825 218 12 24 chr4 56793112 56793314 -98836806 + B3 SINE B2 1 198 0 5 1018 198 0 0 0 chr4 56794048 56794070 -98836050 + (TTC)n Simple_repeat Simple_repeat 1 22 0 5 1018 690 287 203 26 chr4 56794213 56794676 -98835444 + Lx8 LINE L1 6929 7473 0 5 1018 21 0 0 0 chr4 56795309 56795330 -98834790 + AT_rich Low_complexity Low_complexity 1 21 0 5 1018 255 277 31 0 chr4 56795334 56795399 -98834721 + RCHARR1 DNA MER1_type 3 69 -905 5 1018 603 27 0 0 chr4 56795439 56795512 -98834608 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 5 1018 1139 62 0 14 chr4 56795541 56795689 -98834431 - B1_Mm SINE Alu 0 147 2 5 1018 610 232 127 35 chr4 56795706 56795934 -98834186 - B4 SINE B4 -43 249 1 5 1018 287 211 100 0 chr4 56795934 56796022 -98834098 + RCHARR1 DNA MER1_type 826 922 -52 5 1018 805 150 0 22 chr4 56796497 56796633 -98833487 + B1_Mur3 SINE Alu 17 149 0 5 1018 475 232 40 0 chr4 56797851 56797950 -98832170 + B1_Mur4 SINE Alu 2 104 -46 5 1018 791 125 61 77 chr4 56797952 56798076 -98832044 + B2_Mm2 SINE B2 2 153 -42 5 1018 393 22 0 0 chr4 56798076 56798122 -98831998 + (CATA)n Simple_repeat Simple_repeat 4 49 0 5 1018 791 118 6 89 chr4 56798122 56798141 -98831979 + B2_Mm2 SINE B2 154 160 -35 5 1018 551 48 0 35 chr4 56798141 56798227 -98831893 + L1Md_F3 LINE L1 6502 6584 0 5 1018 791 118 6 89 chr4 56798227 56798257 -98831863 + B2_Mm2 SINE B2 161 191 -4 5 1018 252 211 19 0 chr4 56798244 56798296 -98831824 + B1_Mus2 SINE Alu 84 136 -11 5 1018 227 318 161 14 chr4 56798308 56798531 -98831589 + L2 LINE L2 2752 3007 -412 5 1018 284 217 40 14 chr4 56799917 56800012 -98830108 + B1F SINE Alu 34 127 -21 5 1018 1036 51 0 0 chr4 56801020 56801150 -98828970 + B1_Mus1 SINE Alu 12 141 -7 5 1018 201 39 0 0 chr4 56801150 56801176 -98828944 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1018 22 0 0 0 chr4 56801649 56801671 -98828449 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 406 181 34 20 chr4 56801770 56801917 -98828203 + (TA)n Simple_repeat Simple_repeat 2 150 0 5 1018 261 0 0 0 chr4 56802085 56802114 -98828006 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1018 507 191 0 0 chr4 56802221 56802310 -98827810 + PB1D9 SINE Alu 1 89 -31 5 1018 464 263 117 51 chr4 56802678 56802874 -98827246 + MLT2C1 LTR ERVL 179 387 -10 5 1018 36 62 0 0 chr4 56803345 56803409 -98826711 + AT_rich Low_complexity Low_complexity 1 64 0 5 1018 292 22 44 0 chr4 56804013 56804058 -98826062 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1018 2774 150 38 4 chr4 56806002 56806504 -98823616 + RMER15 LTR ERVL 2 520 -55 5 1018 318 67 0 0 chr4 56809024 56809069 -98821051 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1018 333 0 0 0 chr4 56809069 56809106 -98821014 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1018 504 219 48 0 chr4 56810419 56810524 -98819596 - B1F SINE Alu -39 110 1 5 1018 386 220 54 41 chr4 56810582 56810729 -98819391 + RSINE1 SINE B4 17 165 0 5 1018 225 108 0 0 chr4 56810747 56810784 -98819336 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1018 1014 257 9 0 chr4 56810792 56811002 -98819118 + B3 SINE B2 1 212 -4 5 1018 312 267 0 0 chr4 56811027 56811117 -98819003 + PB1D9 SINE Alu 31 120 0 5 1018 1165 202 5 0 chr4 56811787 56812000 -98818120 - B3 SINE B2 -1 215 2 5 1018 215 31 31 0 chr4 56812129 56812161 -98817959 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 1018 235 234 226 10 chr4 56813473 56813710 -98816410 + LTR41B LTR ERVL 500 793 -2 5 1018 840 201 0 7 chr4 56813756 56813911 -98816209 + B3 SINE B2 2 155 -61 5 1018 22 0 0 0 chr4 56814911 56814933 -98815187 + GC_rich Low_complexity Low_complexity 1 22 0 5 1018 317 296 93 31 chr4 56817381 56817510 -98812610 + B1F SINE Alu 13 149 0 5 1018 691 232 70 27 chr4 56817756 56817942 -98812178 - B3A SINE B2 -3 195 2 5 1018 553 244 44 0 chr4 56818078 56818213 -98811907 - B1_Mur1 SINE Alu -7 142 2 5 1018 417 273 102 68 chr4 56819327 56819504 -98810616 - B4 SINE B4 -72 220 38 5 1018 942 245 125 52 chr4 56819505 56819850 -98810270 - ORR1D2 LTR MaLR 0 370 1 5 1018 2097 254 106 27 chr4 56819865 56820594 -98809526 - ORR1D2-int LTR MaLR -16 1354 569 5 1018 2675 149 77 35 chr4 56820630 56820924 -98809196 - RMER1A Other Other -7 1023 716 5 1018 1147 82 0 0 chr4 56820924 56821071 -98809049 + B1_Mm SINE Alu 1 147 0 5 1018 2675 149 77 35 chr4 56821071 56821285 -98808835 - RMER1A Other Other -315 715 494 5 1018 858 179 17 23 chr4 56821286 56821458 -98808662 - B2_Mm2 SINE B2 -23 172 2 5 1018 955 283 119 52 chr4 56821503 56821980 -98808140 - ORR1D2-int LTR MaLR -853 517 9 5 1018 641 252 231 27 chr4 56821987 56822285 -98807835 - ORR1D2 LTR MaLR 0 359 1 5 1018 691 303 35 0 chr4 56822479 56822677 -98807443 - B3 SINE B2 -11 205 1 5 1018 21 0 0 0 chr4 56824371 56824392 -98805728 + AT_rich Low_complexity Low_complexity 1 21 0 5 1018 457 217 16 73 chr4 56826222 56826346 -98803774 - B1_Mur1 SINE Alu 0 149 33 5 1018 2009 124 40 23 chr4 56827094 56827553 -98802567 + RMER2 LTR ERV1 1 567 0 5 1018 462 290 116 18 chr4 56827558 56827783 -98802337 + Lx8 LINE L1 7221 7467 -6 5 1018 516 253 72 30 chr4 56828088 56828255 -98801865 + B3A SINE B2 1 174 -24 5 1018 22 0 0 0 chr4 56829116 56829138 -98800982 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 491 222 0 0 chr4 56829714 56829813 -98800307 + PB1D7 SINE Alu 13 111 -9 5 1018 384 22 0 0 chr4 56831065 56831110 -98799010 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1018 858 199 53 34 chr4 56831183 56831391 -98798729 - B3 SINE B2 -4 212 1 5 1018 483 335 48 38 chr4 56831425 56831579 -98798541 - MER47B DNA MER2_type 0 418 262 5 1018 444 118 0 0 chr4 56831579 56831647 -98798473 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1018 483 335 48 38 chr4 56831647 56831806 -98798314 - MER47B DNA MER2_type -157 261 103 5 1018 870 224 125 0 chr4 56831987 56832179 -98797941 + B3 SINE B2 1 216 0 5 1018 302 259 0 0 chr4 56832190 56832271 -98797849 + ID_B1 SINE B4 143 223 -1 5 1018 288 143 0 0 chr4 56832480 56832536 -98797584 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1018 444 281 44 0 chr4 56833009 56833144 -98796976 + RSINE1 SINE B4 18 158 -7 5 1018 247 229 129 0 chr4 56833680 56833750 -98796370 - PB1D10 SINE Alu -27 93 15 5 1018 609 267 12 0 chr4 56834048 56834209 -98795911 - B3A SINE B2 -35 163 1 5 1018 332 380 0 0 chr4 56834313 56834455 -98795665 + (CTG)n Simple_repeat Simple_repeat 1 142 0 5 1018 432 221 126 0 chr4 56834980 56835107 -98795013 - B1_Mur1 SINE Alu -5 144 2 5 1018 477 0 0 0 chr4 56835932 56835985 -98794135 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1018 282 116 0 0 chr4 56836189 56836232 -98793888 + (CAT)n Simple_repeat Simple_repeat 1 43 0 5 1018 1053 120 58 32 chr4 56836239 56836428 -98793692 - B2_Mm2 SINE B2 0 195 2 5 1018 399 250 0 32 chr4 56836437 56836532 -98793588 - B1_Mus2 SINE Alu -6 141 50 5 1018 265 128 21 0 chr4 56836621 56836668 -98793452 + MTD LTR MaLR 364 411 -8 5 1018 665 220 46 11 chr4 56837165 56837340 -98792780 - ID_B1 SINE B4 -3 221 41 5 1018 217 343 29 19 chr4 56837845 56837949 -98792171 + MIRb SINE MIR 156 260 -8 5 1018 192 152 0 0 chr4 56839559 56839592 -98790528 + (CGTG)n Simple_repeat Simple_repeat 3 35 0 5 1018 290 283 81 50 chr4 56839592 56839752 -98790368 - RSINE1 SINE B4 0 165 1 5 1018 2085 128 69 11 chr4 56840906 56841253 -98788867 + ORR1B2 LTR MaLR 1 367 0 5 1018 696 98 0 0 chr4 56841297 56841399 -98788721 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 5 1018 1116 94 0 0 chr4 56841400 56841559 -98788561 + (TTC)n Simple_repeat Simple_repeat 2 160 0 5 1018 703 0 0 0 chr4 56841615 56841699 -98788421 + L1Md_T LINE L1 6499 6582 0 5 1018 992 222 0 14 chr4 56842858 56843073 -98787047 + B3 SINE B2 2 213 -3 5 1018 1445 39 73 0 chr4 56843306 56843466 -98786654 + B2_Mm1a SINE B2 1 160 -33 5 1018 504 48 0 0 chr4 56843466 56843529 -98786591 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 5 1018 1445 39 73 0 chr4 56843529 56843546 -98786574 + B2_Mm1a SINE B2 161 190 -3 5 1018 279 0 0 0 chr4 56843552 56843583 -98786537 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1018 241 209 51 42 chr4 56844573 56844645 -98785475 + ID4 SINE ID 16 94 -58 5 1018 555 253 40 34 chr4 56845198 56845402 -98784718 - L1ME1 LINE L1 -6 6173 5960 5 1018 1149 88 0 0 chr4 56846263 56846410 -98783710 - B1_Mus1 SINE Alu 0 148 2 5 1018 1182 82 0 0 chr4 56847266 56847413 -98782707 + B1_Mus1 SINE Alu 1 147 -1 5 1018 231 61 0 0 chr4 56847413 56847446 -98782674 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 1018 300 70 0 0 chr4 56848738 56848781 -98781339 - HAL1-3A_ME LINE L1 -840 2018 1976 5 1018 540 168 0 0 chr4 56848784 56848885 -98781235 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1018 1172 50 0 0 chr4 56849036 56849176 -98780944 + B1_Mus2 SINE Alu 2 141 -6 5 1018 540 45 0 0 chr4 56849178 56849245 -98780875 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 5 1018 434 212 45 0 chr4 56849254 56849353 -98780767 + B1F SINE Alu 1 103 -46 5 1018 243 378 0 8 chr4 56849487 56849607 -98780513 + MIR3 SINE MIR 60 178 -30 5 1018 795 198 69 34 chr4 56850069 56850273 -98779847 - B3 SINE B2 -4 212 2 5 1018 606 265 60 0 chr4 56850354 56850505 -98779615 - B3A SINE B2 -38 160 1 5 1018 683 31 0 30 chr4 56851550 56851650 -98778470 - B1_Mm SINE Alu -50 97 1 5 1018 376 202 0 119 chr4 56851567 56851668 -98778452 - MT2B LTR ERVL -361 240 152 5 1018 245 244 103 72 chr4 56852177 56852274 -98777846 + L2a LINE L2 3273 3372 -54 5 1018 1142 57 0 7 chr4 56852373 56852515 -98777605 + B1_Mm SINE Alu 1 141 -6 6 1018 923 135 0 6 chr4 56852517 56852674 -98777446 + (GAAAA)n Simple_repeat Simple_repeat 2 157 0 6 1018 645 172 9 0 chr4 56852800 56852916 -98777204 + B1_Mur1 SINE Alu 2 118 -31 6 1018 347 333 76 0 chr4 56853021 56853124 -98776996 - B1F SINE Alu -7 142 32 6 1018 547 117 42 11 chr4 56853124 56853219 -98776901 + B1_Mur2 SINE Alu 1 98 -51 6 1018 195 204 0 0 chr4 56853219 56853273 -98776847 + GA-rich Low_complexity Low_complexity 1 54 0 6 1018 541 248 120 0 chr4 56853703 56853836 -98776284 - RSINE1 SINE B4 -5 160 12 6 1018 330 277 12 35 chr4 56854637 56854723 -98775397 - B1F1 SINE Alu -42 107 24 6 1018 253 257 40 0 chr4 56855035 56855109 -98775011 - ID_B1 SINE B4 -1 223 147 6 1018 400 286 45 0 chr4 56855173 56855285 -98774835 - B4A SINE B4 -5 287 171 6 1018 192 40 0 0 chr4 56855441 56855466 -98774654 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 6 1018 529 157 0 29 chr4 56855659 56855943 -98774177 + (CAGA)n Simple_repeat Simple_repeat 1 275 0 6 1018 489 277 226 0 chr4 56856506 56856683 -98773437 - ID_B1 SINE B4 -6 218 2 6 1018 1326 163 5 9 chr4 56856911 56857128 -98772992 + B3 SINE B2 1 216 0 6 1018 949 99 7 27 chr4 56857954 56858100 -98772020 + B2_Mm1t SINE B2 21 163 -30 6 1018 212 59 29 0 chr4 56858100 56858134 -98771986 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1018 1671 26 0 20 chr4 56858161 56858358 -98771762 + B2_Mm1a SINE B2 1 193 0 6 1018 431 36 0 0 chr4 56858359 56858414 -98771706 + ORR1A4 LTR MaLR 274 328 -1 6 1018 344 331 21 29 chr4 56859208 56859348 -98770772 + L4 LINE RTE 1702 1840 -189 6 1018 506 185 110 7 chr4 56859898 56860034 -98770086 - B1_Mur4 SINE Alu 0 150 1 6 1018 279 185 133 18 chr4 56860069 56860144 -98769976 + ID4_ SINE ID 4 84 -68 6 1018 611 252 21 7 chr4 56860157 56860301 -98769819 + B1F2 SINE Alu 3 148 -1 6 1018 399 202 36 18 chr4 56860370 56860481 -98769639 + PB1D7 SINE Alu 1 113 -7 6 1018 272 133 17 0 chr4 56860593 56860653 -98769467 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 6 1018 192 77 0 0 chr4 56860882 56860908 -98769212 + (GAA)n Simple_repeat Simple_repeat 2 27 0 6 1018 27 29 0 0 chr4 56860924 56860958 -98769162 + AT_rich Low_complexity Low_complexity 1 34 0 6 1018 386 240 0 0 chr4 56861318 56861393 -98768727 + ID4 SINE ID 5 79 -4 6 1018 1163 62 7 0 chr4 56861454 56861599 -98768521 + B1_Mus1 SINE Alu 3 148 0 6 1018 1122 163 15 0 chr4 56861922 56862118 -98768002 + B3 SINE B2 13 211 -5 6 1018 1066 234 35 41 chr4 56862336 56862626 -98767494 - B4A SINE B4 -3 289 2 6 1018 1056 170 216 80 chr4 56862715 56862856 -98767264 + ORR1C2 LTR MaLR 1 161 -223 6 1018 1203 41 0 13 chr4 56862856 56863005 -98767115 + B1_Mus2 SINE Alu 1 147 0 6 1018 1056 170 216 80 chr4 56863005 56863039 -98767081 + ORR1C2 LTR MaLR 162 171 -213 6 1018 612 0 0 0 chr4 56863039 56863107 -98767013 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1018 1056 170 216 80 chr4 56863107 56863268 -98766852 + ORR1C2 LTR MaLR 172 383 -1 6 1018 356 302 75 0 chr4 56863819 56863925 -98766195 + PB1D7 SINE Alu 1 114 -6 6 1018 299 121 30 0 chr4 56864108 56864174 -98765946 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 6 1018 648 38 0 0 chr4 56864184 56864263 -98765857 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1018 761 301 78 46 chr4 56864265 56864637 -98765483 + MLT1F1 LTR MaLR 167 550 -19 6 1018 419 217 0 102 chr4 56864680 56864750 -98765370 + ORR1E LTR MaLR 32 101 -258 6 1018 1188 176 37 0 chr4 56864750 56864966 -98765154 + URR1A DNA MER1_type 1 224 -2 6 1018 419 217 0 102 chr4 56864966 56865013 -98765107 + ORR1E LTR MaLR 102 137 -222 6 1018 385 164 0 0 chr4 56865028 56865095 -98765025 - PB1D9 SINE Alu -1 119 53 6 1018 369 260 17 56 chr4 56865136 56865297 -98764823 + ORR1E LTR MaLR 219 419 0 6 1018 264 234 25 49 chr4 56865328 56865409 -98764711 + MLT1F1-int LTR MaLR 5 83 -1406 6 1018 600 309 165 13 chr4 56865473 56865788 -98764332 - MLT1A0 LTR MaLR -2 363 1 6 1018 207 0 0 0 chr4 56865816 56865839 -98764281 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 6 1018 448 285 130 72 chr4 56865849 56866125 -98763995 + B4 SINE B4 1 292 0 6 1018 237 188 0 0 chr4 56866146 56866194 -98763926 + B4 SINE B4 245 292 0 6 1018 824 283 107 47 chr4 56866372 56866473 -98763647 + MLT1F1-int LTR MaLR 204 318 -1171 6 1018 1569 37 21 0 chr4 56866473 56866660 -98763460 + B2_Mm2 SINE B2 1 191 -4 6 1018 824 283 107 47 chr4 56866660 56866921 -98763199 + MLT1F1-int LTR MaLR 319 588 -901 6 1018 679 312 130 36 chr4 56866927 56867366 -98762754 + MLT1F1-int LTR MaLR 704 1183 -306 6 1018 419 259 35 18 chr4 56867650 56867764 -98762356 + ID_B1 SINE B4 24 139 -85 6 1018 1291 20 0 0 chr4 56868152 56868299 -98761821 - B1_Mus2 SINE Alu 0 147 1 6 1018 344 260 96 50 chr4 56868483 56868623 -98761497 - PB1D9 SINE Alu 0 148 3 6 1018 213 139 0 0 chr4 56868695 56868738 -98761382 + (C)n Simple_repeat Simple_repeat 1 43 0 6 1018 365 297 82 37 chr4 56869143 56869388 -98760732 + MLT1F1 LTR MaLR 94 349 -25 6 1018 504 266 62 21 chr4 56869791 56869983 -98760137 + B3A SINE B2 15 214 -2 6 1018 1201 61 0 0 chr4 56869992 56870139 -98759981 + B1_Mm SINE Alu 1 147 0 6 1018 205 50 75 0 chr4 56870300 56870340 -98759780 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 6 1018 1614 42 16 0 chr4 56870340 56870530 -98759590 - B2_Mm1a SINE B2 0 193 1 6 1018 1148 28 50 0 chr4 56870533 56870674 -98759446 - B1_Mus1 SINE Alu 0 148 1 6 1018 390 316 6 37 chr4 56870738 56870902 -98759218 - MIR SINE MIR -26 236 78 6 1018 310 288 161 5 chr4 56871231 56871430 -98758690 + MIR SINE MIR 3 232 -30 6 1018 377 212 61 3 chr4 56872237 56872339 -98757781 + PB1D7 SINE Alu 11 112 -37 6 1018 266 309 12 0 chr4 56872339 56872420 -98757700 + ID4 SINE ID 2 83 0 6 1018 246 106 0 60 chr4 56872427 56872477 -98757643 + RMER4A LTR ERVK 1 47 -419 6 1018 707 79 192 23 chr4 56872477 56872607 -98757513 + B2_Mm2 SINE B2 3 154 -41 6 1018 233 29 29 0 chr4 56872619 56872653 -98757467 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1018 525 147 0 0 chr4 56872670 56872745 -98757375 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 6 1018 1110 82 7 0 chr4 56872781 56872927 -98757193 + B1_Mus1 SINE Alu 2 148 0 6 1018 1149 90 0 6 chr4 56872943 56873110 -98757010 + B2_Mm2 SINE B2 27 192 -3 6 1018 2230 129 89 2 chr4 56873094 56873498 -98756622 + RMER4A LTR ERVK 28 466 0 6 1018 417 271 0 9 chr4 56873729 56873837 -98756283 - PB1D10 SINE Alu -5 112 6 6 1018 469 195 26 9 chr4 56873852 56873966 -98756154 - B1_Mur1 SINE Alu 0 149 34 6 1018 353 296 108 42 chr4 56874019 56874231 -98755889 - L1M5 LINE L1 -1465 4681 4456 6 1018 215 152 22 0 chr4 56874663 56874709 -98755411 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1018 1211 42 7 0 chr4 56875317 56875461 -98754659 - B1_Mm SINE Alu 0 147 3 6 1018 486 131 0 0 chr4 56875562 56875661 -98754459 + (GGA)n Simple_repeat Simple_repeat 2 100 0 6 1018 225 328 48 63 chr4 56876283 56876472 -98753648 + MIR SINE MIR 14 199 -63 6 1018 186 331 67 30 chr4 56876865 56876999 -98753121 + L3 LINE CR1 4348 4486 -3 6 1018 480 279 60 27 chr4 56879333 56879517 -98750603 - B3A SINE B2 -4 194 5 6 1018 248 242 32 16 chr4 56880217 56880280 -98749840 + MIRc SINE MIR 16 79 -189 6 1018 227 31 31 0 chr4 56881316 56881348 -98748772 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 1018 396 169 0 0 chr4 56882204 56882281 -98747839 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1018 371 246 100 0 chr4 56882311 56882421 -98747699 + MurERV4-int LTR ERVK 1 121 -5139 6 1018 4882 87 12 57 chr4 56882421 56882990 -98747130 + RLTR22_Mus LTR ERVK 1 563 -1245 6 1018 1407 80 11 0 chr4 56882990 56883177 -98746943 + B2_Mm1t SINE B2 1 189 -4 6 1018 4882 87 12 57 chr4 56883177 56883420 -98746700 + RLTR22_Mus LTR ERVK 564 777 -1031 6 1018 1190 48 0 7 chr4 56883448 56883594 -98746526 - B1_Mm SINE Alu 0 147 3 6 1018 741 65 0 0 chr4 56883598 56883690 -98746430 - 4.5SRNA scRNA scRNA -2 92 1 6 1018 253 125 123 15 chr4 56883690 56883755 -98746365 + RLTR22_Mur LTR ERVK 761 832 -1016 6 1018 321 145 48 95 chr4 56883993 56884077 -98746043 + RLTR22_Mur LTR ERVK 1591 1670 -178 6 1018 5912 219 98 46 chr4 56884077 56884230 -98745890 + MurERV4-int LTR ERVK 125 285 -4975 6 1018 243 0 0 0 chr4 56884230 56884257 -98745863 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 127 5912 219 98 46 chr4 56884257 56885683 -98744437 + MurERV4-int LTR ERVK 286 1763 -3497 6 1019 231 88 0 0 chr4 56885683 56885717 -98744403 + (CAA)n Simple_repeat Simple_repeat 1 34 0 6 1019 5912 219 98 46 chr4 56885717 56885771 -98744349 + MurERV4-int LTR ERVK 1764 1844 -3416 6 1019 3215 32 50 0 chr4 56885773 56886150 -98743970 + MTA_Mm LTR MaLR 1 396 0 6 1019 5015 69 162 95 chr4 56886151 56887157 -98742963 + MTA_Mm-int LTR MaLR 2 1074 -24 6 1019 357 159 0 0 chr4 56887198 56887261 -98742859 + GA-rich Low_complexity Low_complexity 5 67 0 6 1019 15500 141 75 36 chr4 56887261 56888554 -98741566 + MurERV4-int LTR ERVK 2026 3380 -1880 6 1019 1645 42 0 0 chr4 56888554 56888747 -98741373 - B2_Mm1a SINE B2 0 193 1 6 1019 15500 141 60 30 chr4 56888747 56890268 -98739852 + MurERV4-int LTR ERVK 3381 4919 -341 6 1019 909 221 161 29 chr4 56890268 56890727 -98739393 + RMER4B LTR ERVK 26 585 0 6 1019 240 35 0 0 chr4 56890764 56890793 -98739327 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1019 279 0 0 0 chr4 56891676 56891707 -98738413 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1019 1172 62 0 0 chr4 56891707 56891851 -98738269 - B1_Mus1 SINE Alu -3 145 2 6 1019 246 254 45 0 chr4 56893455 56893522 -98736598 + MLT1J LTR MaLR 139 208 -304 6 1019 450 218 241 29 chr4 56894286 56894456 -98735664 - B3 SINE B2 -6 210 5 6 1019 1193 55 0 0 chr4 56894626 56894772 -98735348 - B1_Mus2 SINE Alu 0 147 2 6 1019 22 0 0 0 chr4 56895258 56895280 -98734840 + AT_rich Low_complexity Low_complexity 1 22 0 6 1019 461 173 53 26 chr4 56896203 56896316 -98733804 + PB1D9 SINE Alu 1 116 -4 6 1019 376 347 133 22 chr4 56896501 56897096 -98733024 + HAL1 LINE L1 187 847 -1660 6 1019 189 74 0 0 chr4 56897349 56897376 -98732744 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1019 285 273 25 91 chr4 56897707 56897828 -98732292 + PB1D9 SINE Alu 5 117 -3 6 1019 192 97 0 0 chr4 56898035 56898066 -98732054 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 1019 246 216 39 0 chr4 56898340 56898391 -98731729 + MurSatRep1 Unknown Unknown 234 286 -1851 7 1019 993 77 14 27 chr4 56900029 56900175 -98729945 + B1_Mus1 SINE Alu 5 148 0 7 1019 357 226 0 0 chr4 56900194 56900278 -98729842 + (TA)n Simple_repeat Simple_repeat 2 85 0 7 1019 406 259 44 7 chr4 56900495 56900631 -98729489 - B1F2 SINE Alu -8 141 1 7 1019 623 284 91 91 chr4 56900667 56900853 -98729267 - B3A SINE B2 -9 186 1 7 1019 1303 84 21 21 chr4 56900917 56901111 -98729009 - B2_Mm2 SINE B2 -1 194 1 7 1019 628 211 144 16 chr4 56901667 56901855 -98728265 + B3 SINE B2 4 215 -1 7 1019 695 187 36 24 chr4 56902012 56902200 -98727920 - B3 SINE B2 0 195 1 7 1019 707 114 8 8 chr4 56902329 56902453 -98727667 - Lx LINE L1 -2 6652 6529 7 1019 190 56 27 27 chr4 56902492 56902509 -98727611 + (TTTTG)n Simple_repeat Simple_repeat 1 17 0 7 1019 1147 88 0 0 chr4 56902509 56902657 -98727463 - B1_Mus1 SINE Alu 0 148 1 7 1019 190 56 27 27 chr4 56902657 56902676 -98727444 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 7 1019 225 176 98 0 chr4 56904054 56904105 -98726015 - BC1_Mm scRNA scRNA -84 68 13 7 1019 322 185 15 44 chr4 56904235 56904303 -98725817 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 7 1019 301 244 12 38 chr4 56904303 56904323 -98725797 + ID4_ SINE ID 21 93 -59 7 1019 230 315 11 0 chr4 56906071 56906160 -98723960 + Tigger1 DNA MER2_type 35 124 -2294 7 1019 399 274 73 28 chr4 56906159 56906377 -98723743 + Tigger1 DNA MER2_type 2191 2418 0 7 1019 451 264 0 92 chr4 56906627 56906769 -98723351 - ID_B1 SINE B4 -6 218 90 7 1019 631 256 0 0 chr4 56906648 56906777 -98723343 - B1F SINE Alu -20 129 1 7 1019 450 210 25 0 chr4 56906825 56906906 -98723214 + B1_Mus1 SINE Alu 6 88 -60 7 1019 1603 134 57 60 chr4 56906946 56907263 -98722857 - ORR1A4 LTR MaLR -8 321 6 7 1019 1183 245 65 34 chr4 56907261 56907646 -98722474 + RLTR12A LTR ERVK 160 556 -12 7 1019 318 113 0 88 chr4 56907653 56907721 -98722399 + B1_Mur4 SINE Alu 79 140 -10 7 1019 210 143 0 0 chr4 56907728 56907763 -98722357 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 7 1019 1217 61 0 0 chr4 56908689 56908837 -98721283 - B1_Mus1 SINE Alu 0 148 1 7 1019 2863 227 184 49 chr4 56908858 56910127 -98719993 - RMER1A Other Other -2 1028 22 7 1019 241 290 19 131 chr4 56910864 56910971 -98719149 + PB1D10 SINE Alu 2 96 -21 7 1019 387 113 0 0 chr4 56910976 56911038 -98719082 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1019 189 0 0 0 chr4 56911038 56911059 -98719061 + (GGGGA)n Simple_repeat Simple_repeat 5 25 0 7 1019 819 203 0 20 chr4 56912574 56912725 -98717395 - B1_Mur3 SINE Alu -1 148 1 7 1019 182 305 54 54 chr4 56912891 56913002 -98717118 - L3 LINE CR1 -854 3635 3525 7 1019 823 195 99 10 chr4 56914626 56914818 -98715302 + B3 SINE B2 6 214 -2 7 1019 987 271 13 71 chr4 56915373 56915683 -98714437 - B4A SINE B4 0 292 1 7 1019 353 272 11 0 chr4 56915803 56915895 -98714225 + PB1 SINE Alu 21 113 -14 7 1019 352 223 29 10 chr4 56916081 56916185 -98713935 + HAL1 LINE L1 2252 2357 -150 7 1019 574 223 129 82 chr4 56918090 56918369 -98711751 + MER33 DNA MER1_type 9 300 -24 7 1019 240 200 28 84 chr4 56918376 56918447 -98711673 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 7 1019 2847 46 0 23 chr4 56918655 56919009 -98711111 - ORR1A0 LTR MaLR 0 346 1 7 1019 625 304 26 16 chr4 56919779 56919973 -98710147 - B4A SINE B4 -14 278 83 7 1019 523 257 158 46 chr4 56919987 56920183 -98709937 - B4 SINE B4 -74 218 1 7 1019 207 0 0 0 chr4 56920191 56920214 -98709906 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 7 1019 1210 48 0 0 chr4 56920214 56920359 -98709761 - B1_Mm SINE Alu -2 145 1 7 1019 1136 29 50 0 chr4 56921806 56921946 -98708174 - B1_Mus1 SINE Alu -1 147 1 7 1019 491 257 73 20 chr4 56921979 56922130 -98707990 - B3 SINE B2 -57 159 1 7 1019 261 290 22 26 chr4 56923417 56923547 -98706573 + MER5A1 DNA MER1_type 9 133 -33 7 1019 1492 193 165 103 chr4 56923825 56924322 -98705798 + RLTR12B LTR ERVK 1 528 0 7 1019 251 290 8 101 chr4 56924642 56924761 -98705359 + B1F1 SINE Alu 1 108 -9 7 1019 344 200 0 12 chr4 56925147 56925228 -98704892 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 1019 1629 168 90 46 chr4 56925461 56925829 -98704291 + ORR1C2 LTR MaLR 1 384 0 7 1019 750 219 109 5 chr4 56926154 56926347 -98703773 + B3 SINE B2 1 213 -3 7 1019 241 301 11 11 chr4 56926713 56926807 -98703313 - L1M4b LINE L1 -4930 2404 2311 7 1019 205 333 116 0 chr4 56927845 56927974 -98702146 - L2 LINE L2 -794 2625 2482 7 1019 315 0 0 0 chr4 56928384 56928419 -98701701 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 1019 234 219 0 0 chr4 56928930 56928971 -98701149 - Lx8 LINE L1 -399 7074 7034 7 1019 230 243 40 0 chr4 56928971 56929045 -98701075 + L1M3 LINE L1 5094 5170 -970 7 1019 328 333 29 7 chr4 56930390 56930529 -98699591 - RSINE1 SINE B4 -3 162 21 7 1019 392 211 118 15 chr4 56931718 56931808 -98698312 + B3 SINE B2 66 170 -46 7 1019 467 107 0 13 chr4 56931808 56931884 -98698236 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1019 392 211 118 15 chr4 56931884 56931928 -98698192 + B3 SINE B2 171 213 -3 7 1019 432 349 0 8 chr4 56931979 56932656 -98697464 + GA-rich Low_complexity Low_complexity 1 671 0 7 1019 324 48 0 0 chr4 56933338 56933380 -98696740 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1019 311 218 46 0 chr4 56933399 56933486 -98696634 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 7 1019 202 175 0 66 chr4 56933738 56933799 -98696321 + A-rich Low_complexity Low_complexity 6 62 0 7 1019 1510 207 127 87 chr4 56934136 56934230 -98695890 + MTD LTR MaLR 2 95 -324 7 1019 1239 41 0 7 chr4 56934230 56934379 -98695741 + B1_Mus1 SINE Alu 1 148 0 7 1019 1510 207 127 87 chr4 56934379 56934686 -98695434 + MTD LTR MaLR 96 419 0 7 1019 22 0 0 0 chr4 56934686 56934708 -98695412 + AT_rich Low_complexity Low_complexity 1 22 0 7 1019 274 246 13 15 chr4 56934852 56934928 -98695192 + ID_B1 SINE B4 76 147 -77 7 1019 426 172 97 0 chr4 56934872 56934965 -98695155 + PB1D10 SINE Alu 10 111 -6 7 1019 547 259 54 7 chr4 56935706 56935854 -98694266 - MIR SINE MIR -96 166 12 7 1019 219 88 0 0 chr4 56935903 56935937 -98694183 + (G)n Simple_repeat Simple_repeat 1 34 0 7 1019 699 169 21 49 chr4 56936996 56937139 -98692981 + B1_Mur4 SINE Alu 12 150 0 7 1019 1038 213 96 90 chr4 56937154 56937510 -98692610 + ORR1D1 LTR MaLR 17 374 0 7 1019 310 131 32 32 chr4 56937550 56937613 -98692507 - B1_Mur4 SINE Alu 0 150 88 7 1019 320 240 240 0 chr4 56937609 56937713 -98692407 + B3 SINE B2 82 210 -6 7 1019 217 254 0 0 chr4 56937997 56938052 -98692068 + GA-rich Low_complexity Low_complexity 2 56 0 7 1019 413 206 349 6 chr4 56940973 56941131 -98688989 - B3 SINE B2 -4 212 1 7 1019 281 193 41 29 chr4 56944034 56944136 -98685984 - PB1D9 SINE Alu 0 127 24 7 1019 318 194 0 0 chr4 56944102 56944164 -98685956 + PB1D9 SINE Alu 58 119 -1 7 1019 716 124 17 0 chr4 56944167 56944287 -98685833 - B1_Mur4 SINE Alu -28 121 1 7 1019 483 217 265 0 chr4 56944436 56944602 -98685518 - B3 SINE B2 -6 210 1 7 1019 400 298 45 99 chr4 56944777 56945090 -98685030 + RLTR26 LTR ERVK 192 487 -155 7 1019 730 212 13 44 chr4 56945379 56945537 -98684583 - B3A SINE B2 -38 160 8 7 1019 1395 132 44 0 chr4 56945639 56945867 -98684253 + Lx3_Mus LINE L1 6705 6942 -67 7 1019 22 35 0 0 chr4 56945867 56945896 -98684224 + AT_rich Low_complexity Low_complexity 1 29 0 7 1019 811 165 169 6 chr4 56946587 56946736 -98683384 + B3 SINE B2 4 168 -48 7 1019 546 29 0 0 chr4 56946736 56946804 -98683316 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1019 811 165 169 6 chr4 56946804 56946837 -98683283 + B3 SINE B2 169 215 -1 7 1019 723 251 89 0 chr4 56947737 56947972 -98682148 - MER2 DNA MER2_type -69 276 21 7 1019 249 57 0 0 chr4 56948018 56948053 -98682067 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1019 860 35 0 50 chr4 56948053 56948174 -98681946 + B1_Mus2 SINE Alu 21 135 -12 7 1019 23 33 0 0 chr4 56948176 56948206 -98681914 + GC_rich Low_complexity Low_complexity 1 30 0 7 1019 504 230 67 30 chr4 56948397 56948574 -98681546 + L1MB5 LINE L1 5654 5833 -341 7 1019 411 226 86 9 chr4 56948579 56948695 -98681425 + L1MB5 LINE L1 6024 6148 -26 7 1019 885 243 185 25 chr4 56948866 56949191 -98680929 + MTD LTR MaLR 30 406 -13 7 1019 899 238 9 9 chr4 56951658 56951870 -98678250 - B3 SINE B2 -3 213 2 7 1019 534 284 134 9 chr4 56952060 56952284 -98677836 + RCHARR1 DNA MER1_type 3 254 -720 7 1019 1040 234 167 93 chr4 56952294 56952443 -98677677 + RCHARR1 DNA MER1_type 378 509 -465 7 1019 1007 116 0 13 chr4 56952443 56952592 -98677528 - B1_Mus1 SINE Alu 0 148 2 7 1019 1040 234 167 93 chr4 56952592 56952863 -98677257 + RCHARR1 DNA MER1_type 510 832 -142 7 1019 1343 153 14 5 chr4 56952863 56953073 -98677047 + B3 SINE B2 5 216 0 7 1019 1040 234 167 93 chr4 56953073 56953207 -98676913 + RCHARR1 DNA MER1_type 833 973 -1 7 1019 1433 199 107 16 chr4 56953629 56953992 -98676128 - MTD LTR MaLR -19 400 5 7 1019 461 97 14 0 chr4 56955066 56955138 -98674982 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1019 465 216 268 0 chr4 56955856 56956050 -98674070 - B4A SINE B4 -46 246 1 7 1019 285 232 60 35 chr4 56956356 56956472 -98673648 - MIR3 SINE MIR -25 183 65 7 1019 376 347 0 51 chr4 56958464 56958640 -98671480 - B3A SINE B2 0 198 32 7 1019 554 253 107 8 chr4 56960647 56960822 -98669298 - B3A SINE B2 -1 197 21 7 1019 308 287 110 14 chr4 56960872 56961017 -98669103 - MIR SINE MIR -43 219 61 8 1019 209 283 17 0 chr4 56961847 56961907 -98668213 + GA-rich Low_complexity Low_complexity 1 61 0 8 1019 194 322 107 0 chr4 56963001 56963122 -98666998 + L2c LINE L2 3216 3349 -38 8 1019 816 253 66 30 chr4 56963364 56963669 -98666451 + RMER5 LTR ERV1 52 367 -167 8 1019 274 170 0 0 chr4 56963675 56963722 -98666398 - B1_Mus2 SINE Alu -11 136 90 8 1019 2500 136 36 43 chr4 56963722 56964189 -98665931 + RMER4A LTR ERVK 3 466 0 8 1019 516 161 59 118 chr4 56964191 56964360 -98665760 + RMER4A LTR ERVK 308 466 0 8 1019 610 121 0 0 chr4 56964360 56964451 -98665669 - B1_Mur4 SINE Alu -57 93 3 8 1019 469 283 50 6 chr4 56964455 56964615 -98665505 + RMER5 LTR ERV1 368 534 0 8 1019 346 282 34 0 chr4 56965409 56965526 -98664594 + RMER15 LTR ERVL 385 505 -70 8 1019 324 0 0 0 chr4 56965785 56965821 -98664299 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1019 601 160 175 25 chr4 56966139 56966299 -98663821 - MTD LTR MaLR 0 419 236 8 1019 281 83 0 111 chr4 56966322 56966376 -98663744 - B2_Mm2 SINE B2 -146 49 2 8 1019 4413 46 41 7 chr4 56966439 56966981 -98663139 - LTRIS2 LTR ERV1 0 564 5 8 1019 552 15 0 0 chr4 56967044 56967109 -98663011 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 8 1019 638 153 16 25 chr4 56967120 56967241 -98662879 + B1_Mur3 SINE Alu 29 148 -1 8 1019 225 94 0 0 chr4 56967584 56967616 -98662504 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 8 1019 304 256 78 0 chr4 56967625 56967715 -98662405 - PB1D10 SINE Alu -20 97 1 8 1019 971 82 104 0 chr4 56967906 56968040 -98662080 - B1_Mus1 SINE Alu 0 148 1 8 1019 747 20 88 0 chr4 56968263 56968365 -98661755 - BC1_Mm scRNA scRNA -41 111 1 8 1019 756 288 125 50 chr4 56968365 56968742 -98661378 + MLT1D LTR MaLR 80 484 -21 8 1019 1242 34 0 0 chr4 56968900 56969046 -98661074 - B1_Mm SINE Alu 0 147 2 8 1019 265 324 128 12 chr4 56969128 56969300 -98660820 - MLT1A LTR MaLR -182 192 1 8 1019 528 236 58 45 chr4 56969534 56969689 -98660431 - RSINE1 SINE B4 -7 158 2 8 1019 308 339 133 27 chr4 56971865 56972053 -98658067 + MER58B DNA MER1_type 6 213 -128 8 1019 216 67 0 0 chr4 56972562 56972592 -98657528 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1019 990 172 10 40 chr4 56972652 56972852 -98657268 + B2_Mm2 SINE B2 1 194 -1 8 1019 1177 85 6 6 chr4 56972853 56973030 -98657090 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 8 1019 33 56 0 0 chr4 56976365 56976419 -98653701 + AT_rich Low_complexity Low_complexity 1 54 0 8 1019 363 225 25 0 chr4 56976463 56976543 -98653577 - B3A SINE B2 -114 84 3 8 1019 230 233 0 16 chr4 56976623 56976684 -98653436 - ID4 SINE ID -23 60 1 8 1019 629 281 11 136 chr4 56976788 56976958 -98653162 + B4A SINE B4 3 152 -140 8 1019 1547 57 0 0 chr4 56976958 56977150 -98652970 + B2_Mm1a SINE B2 2 193 0 8 1019 629 281 11 136 chr4 56977150 56977251 -98652869 + B4A SINE B4 153 240 -52 8 1019 265 214 283 10 chr4 56977246 56977345 -98652775 + B1_Mur4 SINE Alu 24 149 -1 8 1019 260 53 0 26 chr4 56977347 56977386 -98652734 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 8 1019 578 193 0 16 chr4 56977921 56978042 -98652078 - PB1D9 SINE Alu 0 120 2 8 1019 589 54 31 41 chr4 56978050 56978147 -98651973 + B2_Mm2 SINE B2 98 193 -2 8 1019 279 162 139 56 chr4 56978286 56978358 -98651762 - ID4_ SINE ID -2 81 4 8 1019 435 291 7 29 chr4 56978389 56978527 -98651593 - ID_B1 SINE B4 -9 215 81 8 1019 263 256 81 0 chr4 56979009 56979095 -98651025 + MER44A DNA MER2_type 9 101 -238 8 1019 610 204 77 14 chr4 56979091 56979271 -98650849 - B3 SINE B2 -7 188 5 8 1019 232 267 39 55 chr4 56979274 56979401 -98650719 + MER44A DNA MER2_type 89 213 -126 8 1019 362 271 135 22 chr4 56979470 56979655 -98650465 - MIRc SINE MIR -17 251 46 8 1019 209 318 0 29 chr4 56980521 56980589 -98649531 + MIRc SINE MIR 23 88 -180 8 1019 526 306 7 7 chr4 56981263 56981411 -98648709 + RSINE1 SINE B4 18 165 0 8 1019 884 43 0 0 chr4 56981421 56981537 -98648583 + B1_Mm SINE Alu 32 147 0 8 1019 1067 97 0 0 chr4 56981747 56981891 -98648229 + B1_Mus1 SINE Alu 2 145 -3 8 1019 228 248 84 56 chr4 56981972 56982079 -98648041 + L1MD3 LINE L1 7680 7789 -206 8 1019 299 256 67 17 chr4 56982302 56982421 -98647699 + L1MB4 LINE L1 6053 6177 -3 8 1019 363 73 0 0 chr4 56983141 56983196 -98646924 + (CCA)n Simple_repeat Simple_repeat 1 55 0 8 1019 351 0 0 0 chr4 56983401 56983440 -98646680 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1019 252 0 0 0 chr4 56983468 56983496 -98646624 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1019 601 276 9 61 chr4 56983573 56983615 -98646505 - B3 SINE B2 -15 201 165 8 1019 249 33 0 0 chr4 56983615 56983645 -98646475 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1019 657 270 6 8 chr4 56983645 56983814 -98646306 - B3A SINE B2 -52 164 1 8 1019 501 270 235 0 chr4 56984144 56984344 -98645776 + MER21B LTR ERV1 524 770 -93 8 1019 288 0 0 0 chr4 56984353 56984385 -98645735 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1019 528 225 144 111 chr4 56984675 56984855 -98645265 - B3A SINE B2 -12 186 1 8 1019 197 65 32 0 chr4 56984860 56984891 -98645229 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1019 337 226 0 0 chr4 56984898 56984960 -98645160 - B1_Mur4 SINE Alu -84 66 5 8 1019 7187 35 1 0 chr4 56985533 56986389 -98643731 - L1_Mm LINE L1 -1035 4848 3992 8 1019 2988 42 18 26 chr4 56986393 56986783 -98643337 + L1Md_F3 LINE L1 6198 6584 0 8 1019 1169 63 0 0 chr4 56986814 56986957 -98643163 - B1_Mm SINE Alu 0 147 5 8 1019 572 320 13 0 chr4 56987443 56987599 -98642521 + RSINE1 SINE B4 2 159 -6 8 1019 299 245 11 0 chr4 56987847 56987941 -98642179 + G-rich Low_complexity Low_complexity 1 95 0 8 1019 702 153 0 53 chr4 56987952 56988139 -98641981 + G-rich Low_complexity Low_complexity 2 178 0 8 1019 371 224 78 39 chr4 56988695 56988797 -98641323 - PB1D10 SINE Alu -7 110 5 8 1019 800 217 147 0 chr4 56988936 56989120 -98641000 + ID_B1 SINE B4 1 211 -13 8 1019 1523 191 18 0 chr4 56989122 56989400 -98640720 + MTD LTR MaLR 5 287 -132 8 1019 1278 68 0 0 chr4 56991550 56991712 -98638408 + L1_Mus1 LINE L1 6406 6567 0 8 1019 1310 183 4 4 chr4 56991890 56992115 -98638005 + URR1B DNA MER1_type 1 225 0 8 1019 425 267 184 60 chr4 56992246 56992281 -98637839 + ORR1E LTR MaLR 6 43 -316 8 1019 231 36 0 0 chr4 56992281 56992309 -98637811 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1019 425 267 184 60 chr4 56992309 56992588 -98637532 + ORR1E LTR MaLR 44 359 0 8 1019 240 358 0 0 chr4 56992829 56992924 -98637196 - L1M5 LINE L1 -797 5443 5349 8 1019 189 221 0 0 chr4 56993045 56993113 -98637007 + T-rich Low_complexity Low_complexity 1 68 0 8 1019 676 181 27 14 chr4 56993378 56993524 -98636596 - B1_Mur1 SINE Alu -1 148 1 8 1019 435 285 52 92 chr4 56994146 56994397 -98635723 + L1MB8 LINE L1 5872 6112 -66 8 1019 896 132 7 0 chr4 56994826 56994978 -98635142 + (TA)n Simple_repeat Simple_repeat 2 154 0 8 1019 403 238 0 0 chr4 56994987 56995067 -98635053 - ID4_ SINE ID -2 81 2 8 1019 486 266 84 23 chr4 56995396 56995527 -98634593 + RSINE1 SINE B4 6 144 -21 8 1019 462 120 0 0 chr4 56995559 56995634 -98634486 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1019 569 247 235 0 chr4 56995637 56995803 -98634317 - B3 SINE B2 -10 206 2 8 1019 392 208 13 0 chr4 56996263 56996340 -98633780 - PB1D10 SINE Alu -9 108 31 8 1019 1929 264 94 2 chr4 56996413 56996979 -98633141 - L1MB7 LINE L1 -57 6127 5510 8 1019 578 257 84 37 chr4 56997235 56997425 -98632695 + B4 SINE B4 28 226 -66 8 1019 661 274 99 53 chr4 56997425 56997687 -98632433 + B4A SINE B4 1 274 -18 8 1019 335 308 0 0 chr4 56997721 56997799 -98632321 + B4 SINE B4 215 292 0 8 1019 228 255 68 12 chr4 56998022 56998132 -98631988 - ID4 SINE ID -33 119 6 8 1019 5857 47 5 10 chr4 56998175 56998983 -98631137 + RLTR13C2 LTR ERVK 1 902 0 8 1019 190 285 149 92 chr4 56999580 56999754 -98630366 + MIR SINE MIR 65 248 -14 8 1019 619 261 136 59 chr4 56999764 57000000 -98630120 + B4 SINE B4 3 256 -36 8 1019 240 266 0 15 chr4 57001122 57001187 -98628933 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1019 487 281 155 68 chr4 57001203 57001455 -98628665 - B4 SINE B4 -18 274 1 2 1019 401 271 23 46 chr4 57001482 57001612 -98628508 + MLT1J2 LTR MaLR 244 402 -110 3 1019 356 299 94 13 chr4 57002007 57002156 -98627964 + MLT1J2 LTR MaLR 348 508 -4 3 1019 29 70 0 0 chr4 57002986 57003043 -98627077 + GC_rich Low_complexity Low_complexity 1 57 0 4 1019 28 99 0 0 chr4 57003174 57003265 -98626855 + GC_rich Low_complexity Low_complexity 1 91 0 5 1019 418 270 54 9 chr4 57003427 57003539 -98626581 + MER5A1 DNA MER1_type 14 130 -36 6 1019 899 224 71 5 chr4 57004437 57004634 -98625486 - B4A SINE B4 -81 211 2 7 1019 466 312 121 24 chr4 57004634 57004811 -98625309 - B4A SINE B4 -95 197 1 8 1019 1464 209 67 59 chr4 57005052 57005458 -98624662 + L1MB8 LINE L1 5581 5989 -189 9 1019 523 360 13 21 chr4 57006612 57006845 -98623275 + Tigger15a DNA TcMar 425 655 -60 1 1019 261 319 16 48 chr4 57007043 57007260 -98622860 + L1MC LINE L1 5342 5556 -686 1 1019 302 200 13 67 chr4 57007260 57007335 -98622785 + L3 LINE CR1 4406 4476 -13 1 1019 22 35 0 0 chr4 57007451 57007480 -98622640 + AT_rich Low_complexity Low_complexity 1 29 0 1 1019 242 246 0 0 chr4 57007480 57007549 -98622571 + L1M5 LINE L1 5684 5752 -372 1 1019 645 248 70 0 chr4 57008963 57009092 -98621028 + B1_Mur2 SINE Alu 1 138 -11 1 1019 1781 193 24 46 chr4 57009481 57009851 -98620269 + ORR1D2 LTR MaLR 5 366 -4 1 1019 262 273 101 111 chr4 57010041 57010140 -98619980 - PB1D10 SINE Alu -8 109 12 1 1019 670 268 31 16 chr4 57010186 57010379 -98619741 - B3A SINE B2 0 198 3 1 1019 723 254 102 36 chr4 57010720 57010994 -98619126 + B4 SINE B4 1 292 0 1 1019 616 56 22 0 chr4 57011012 57011101 -98619019 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1019 212 341 87 26 chr4 57011508 57011737 -98618383 + L2a LINE L2 2918 3160 -266 2 1019 357 24 0 0 chr4 57011777 57011819 -98618301 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1019 276 274 37 50 chr4 57011819 57011962 -98618158 + L2a LINE L2 3253 3387 0 2 1019 934 293 16 81 chr4 57011978 57012286 -98617834 + B4A SINE B4 1 288 -4 2 1019 236 294 15 0 chr4 57012303 57012371 -98617749 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 2 1019 291 232 45 75 chr4 57012689 57012788 -98617332 - MIRb SINE MIR 0 268 159 2 1019 1146 172 33 28 chr4 57012916 57013131 -98616989 + B3 SINE B2 1 216 0 2 1019 992 84 325 12 chr4 57013228 57013397 -98616723 + URR1B DNA MER1_type 3 224 -1 2 1019 275 0 29 0 chr4 57013442 57013477 -98616643 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1019 621 216 38 46 chr4 57013478 57013609 -98616511 - RSINE1 SINE B4 -25 140 11 2 1019 811 230 156 5 chr4 57013652 57013844 -98616276 + B4A SINE B4 11 231 -61 3 1019 640 231 111 26 chr4 57013844 57014057 -98616063 + B3A SINE B2 1 216 0 3 1019 399 253 25 0 chr4 57014062 57014141 -98615979 + B4A SINE B4 212 292 0 3 1019 320 87 0 21 chr4 57014197 57014244 -98615876 + HAL1-3A_ME LINE L1 1978 2023 -835 3 1019 423 278 146 12 chr4 57014291 57014455 -98615665 + MER5A DNA MER1_type 4 189 0 3 1019 229 234 117 87 chr4 57014516 57014619 -98615501 + PB1D9 SINE Alu 15 120 0 3 1019 855 216 91 20 chr4 57014745 57014943 -98615177 - B3 SINE B2 0 216 5 3 1019 1486 52 21 10 chr4 57015077 57015270 -98614850 - B2_Mm2 SINE B2 0 195 1 3 1019 674 340 81 42 chr4 57015557 57015892 -98614228 + MLT1I LTR MaLR 2 349 -62 3 1019 293 307 136 43 chr4 57015987 57016171 -98613949 + Charlie1a DNA MER1_type 126 326 -1129 3 1020 1229 145 49 13 chr4 57016412 57016636 -98613484 + Lx LINE L1 6422 6653 -1 3 1020 279 223 72 31 chr4 57017181 57017278 -98612842 + ORR1E LTR MaLR 97 197 -162 4 1020 650 207 287 0 chr4 57018587 57018751 -98611369 + B3 SINE B2 2 212 -4 4 1020 615 250 50 62 chr4 57019010 57019184 -98610936 + B4 SINE B4 5 256 -36 4 1020 285 29 0 0 chr4 57019184 57019218 -98610902 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 4 1020 615 278 36 46 chr4 57019218 57019249 -98610871 + B4 SINE B4 257 284 -8 4 1020 543 53 0 0 chr4 57019260 57019335 -98610785 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1020 211 263 3 34 chr4 57019347 57019413 -98610707 - MIRb SINE MIR -143 125 57 4 1020 293 284 32 15 chr4 57019420 57019565 -98610555 + L1MB5 LINE L1 5680 5827 -353 4 1020 414 237 88 44 chr4 57019565 57019623 -98610497 + B4A SINE B4 25 88 -204 4 1020 612 72 12 0 chr4 57019623 57019706 -98610414 + B1_Mus1 SINE Alu 2 85 -63 4 1020 579 29 0 0 chr4 57019711 57019780 -98610340 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 4 1020 255 297 62 8 chr4 57019785 57019914 -98610206 + L1MB5 LINE L1 5890 6025 -149 4 1020 389 215 74 21 chr4 57019935 57020030 -98610090 + PB1D10 SINE Alu 1 100 -17 5 1020 939 299 80 15 chr4 57020142 57020404 -98609716 + B4A SINE B4 10 288 -4 5 1020 317 281 106 16 chr4 57020550 57020673 -98609447 + L1MB5 LINE L1 6026 6159 -15 4 1020 248 211 14 40 chr4 57023058 57023132 -98606988 + GA-rich Low_complexity Low_complexity 5 76 0 5 1020 222 346 12 12 chr4 57026479 57026561 -98603559 + MIR SINE MIR 45 126 -82 5 1020 21 0 0 0 chr4 57027275 57027296 -98602824 + AT_rich Low_complexity Low_complexity 1 21 0 5 1020 314 294 47 0 chr4 57027383 57027491 -98602629 - PB1D7 SINE Alu -5 115 3 5 1020 276 127 0 0 chr4 57028728 57028783 -98601337 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1020 996 238 52 0 chr4 57028925 57029135 -98600985 + ID_B1 SINE B4 4 224 0 5 1020 180 111 0 0 chr4 57029916 57029943 -98600177 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1020 385 327 69 46 chr4 57030401 57030425 -98599695 + ID_B1 SINE B4 48 173 -51 5 1020 569 239 46 60 chr4 57030425 57030515 -98599605 + B1F SINE Alu 1 95 -54 6 1020 3604 15 2 0 chr4 57030515 57030910 -98599210 + MTA_Mm LTR MaLR 1 396 0 6 1020 385 327 69 46 chr4 57030910 57030968 -98599152 + ID_B1 SINE B4 174 224 0 5 1020 180 0 0 0 chr4 57031803 57031823 -98598297 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1020 759 229 7 7 chr4 57031824 57031969 -98598151 - RSINE1 SINE B4 -18 147 3 6 1020 225 65 0 0 chr4 57031981 57032012 -98598108 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1020 764 199 0 35 chr4 57032015 57032156 -98597964 - B1_Mur1 SINE Alu -13 136 1 6 1020 362 202 168 11 chr4 57032405 57032500 -98597620 - ID_B1 SINE B4 -5 219 110 6 1020 213 108 0 0 chr4 57032749 57032786 -98597334 + (TGG)n Simple_repeat Simple_repeat 3 39 0 6 1020 201 39 0 0 chr4 57033025 57033051 -98597069 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1020 420 20 0 0 chr4 57033065 57033114 -98597006 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1020 922 89 0 0 chr4 57033114 57033237 -98596883 - B1_Mus1 SINE Alu -12 136 14 7 1020 308 316 43 36 chr4 57033240 57033493 -98596627 - L1MB4 LINE L1 -33 6147 5893 7 1020 397 281 144 12 chr4 57033694 57033867 -98596253 - B3A SINE B2 0 198 3 7 1020 1158 58 0 0 chr4 57034008 57034147 -98595973 + B1_Mus1 SINE Alu 1 139 -9 7 1020 781 194 112 0 chr4 57034300 57034460 -98595660 - B3A SINE B2 -16 182 5 7 1020 310 96 47 28 chr4 57034461 57034568 -98595552 + (TA)n Simple_repeat Simple_repeat 2 110 0 7 1020 408 299 0 10 chr4 57034721 57034819 -98595301 - PB1D10 SINE Alu -20 97 1 7 1020 225 94 0 0 chr4 57035351 57035383 -98594737 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1020 672 98 63 60 chr4 57035398 57035533 -98594587 + B1_Mur4 SINE Alu 13 149 -1 7 1020 400 298 88 0 chr4 57035587 57035701 -98594419 + PB1 SINE Alu 1 124 -3 7 1020 614 272 77 40 chr4 57035821 57036043 -98594077 + B4A SINE B4 1 230 -62 8 1020 225 0 0 0 chr4 57036107 57036132 -98593988 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1020 549 316 71 20 chr4 57036636 57036833 -98593287 + MLT1F2 LTR MaLR 1 207 -353 8 1020 299 121 17 0 chr4 57037697 57037755 -98592365 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1020 710 293 19 6 chr4 57037838 57037996 -98592124 + B3A SINE B2 8 167 -31 8 1020 234 0 0 0 chr4 57037999 57038025 -98592095 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1020 1606 171 172 53 chr4 57038039 57038434 -98591686 + RMER10A LTR ERVL 1 442 0 8 1020 21 36 0 0 chr4 57038506 57038534 -98591586 + AT_rich Low_complexity Low_complexity 1 28 0 8 1020 393 267 85 17 chr4 57038559 57038677 -98591443 - RSINE1 SINE B4 -38 127 2 8 1020 291 295 13 0 chr4 57039505 57039583 -98590537 - ID4_ SINE ID -2 81 3 8 1020 364 164 54 14 chr4 57039815 57039889 -98590231 - ID4 SINE ID -4 79 3 9 1020 182 218 0 154 chr4 57040772 57040789 -98589331 - MIRm SINE MIR -1 275 239 9 1020 187 167 167 0 chr4 57040789 57040831 -98589289 - L2c LINE L2 -3 3384 3336 9 1020 624 305 6 0 chr4 57042035 57042199 -98587921 - RSINE1 SINE B4 0 165 1 9 1020 731 275 78 46 chr4 57042467 57042749 -98587371 - B4A SINE B4 -1 291 1 9 1020 289 340 20 10 chr4 57042750 57042848 -98587272 - PB1 SINE Alu -28 99 1 9 1020 1195 70 0 0 chr4 57042915 57043057 -98587063 + B1_Mus2 SINE Alu 1 142 -5 9 1020 1196 163 15 0 chr4 57043125 57043328 -98586792 + URR1A DNA MER1_type 19 224 -2 9 1020 484 241 18 18 chr4 57043616 57043726 -98586394 - RSINE1 SINE B4 0 165 56 9 1020 250 263 168 20 chr4 57043924 57044025 -98586095 + LTR50 LTR ERVL 1 116 -679 9 1020 588 280 28 0 chr4 57044646 57044789 -98585331 + RSINE1 SINE B4 2 148 -17 1 1020 261 0 0 0 chr4 57044822 57044851 -98585269 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1020 288 368 9 0 chr4 57046233 57046244 -98583876 + ID SINE ID 70 81 -143 1 1020 312 365 0 0 chr4 57046244 57046340 -98583780 + PB1D10 SINE Alu 1 96 -21 1 1020 203 233 0 23 chr4 57046665 57046753 -98583367 + (ATG)n Simple_repeat Simple_repeat 2 87 0 1 1020 1068 65 0 0 chr4 57046898 57047052 -98583068 + (TG)n Simple_repeat Simple_repeat 2 155 0 1 1020 308 239 130 0 chr4 57047057 57047149 -98582971 - RSINE1 SINE B4 -41 124 21 1 1020 344 287 30 71 chr4 57047321 57047490 -98582630 - MIRb SINE MIR -106 162 1 1 1020 753 306 22 60 chr4 57048254 57048522 -98581598 + B4 SINE B4 34 291 -1 1 1020 252 0 0 0 chr4 57048652 57048680 -98581440 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1020 804 146 8 0 chr4 57048689 57048812 -98581308 - B1_Mur4 SINE Alu -21 129 6 1 1020 302 288 59 81 chr4 57048713 57048849 -98581271 - MT2B LTR ERVL -344 257 125 1 1020 30 27 0 0 chr4 57049242 57049279 -98580841 + AT_rich Low_complexity Low_complexity 1 37 0 1 1020 527 200 24 48 chr4 57049299 57049425 -98580695 - RSINE1 SINE B4 -40 125 3 1 1020 477 119 11 21 chr4 57049531 57049625 -98580495 + T-rich Low_complexity Low_complexity 3 95 0 1 1020 808 76 0 0 chr4 57049625 57049730 -98580390 - B1_Mm SINE Alu 0 147 43 1 1020 785 210 24 18 chr4 57049727 57049892 -98580228 + ID_B1 SINE B4 54 219 -5 1 1020 796 275 16 0 chr4 57049899 57050081 -98580039 + B4 SINE B4 85 269 -23 1 1020 552 106 0 0 chr4 57050083 57050168 -98579952 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1020 782 235 46 142 chr4 57050744 57050836 -98579284 + B4 SINE B4 1 96 -196 1 1020 501 228 145 45 chr4 57050836 57051015 -98579105 + B3A SINE B2 2 198 0 1 1020 782 235 46 142 chr4 57051015 57051245 -98578875 + B4 SINE B4 97 292 0 1 1020 402 21 0 0 chr4 57051285 57051332 -98578788 + (CACG)n Simple_repeat Simple_repeat 1 47 0 1 1020 326 306 69 36 chr4 57051617 57051792 -98578328 + MIRb SINE MIR 43 222 -46 1 1020 227 319 48 48 chr4 57052268 57052413 -98577707 - L2c LINE L2 -307 3080 2936 1 1020 201 290 0 16 chr4 57052877 57052940 -98577180 + G-rich Low_complexity Low_complexity 3 64 0 1 1020 482 178 11 11 chr4 57053058 57053149 -98576971 + B1_Mur4 SINE Alu 9 99 -51 1 1020 203 88 29 0 chr4 57053149 57053183 -98576937 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 1020 235 280 78 70 chr4 57053198 57053340 -98576780 - MER5C DNA MER1_type -83 230 88 1 1020 967 210 44 24 chr4 57054167 57054332 -98575788 + B3 SINE B2 2 166 -50 1 1020 252 0 0 0 chr4 57054332 57054360 -98575760 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1020 967 210 44 24 chr4 57054360 57054399 -98575721 + B3 SINE B2 167 210 -6 1 1020 520 224 17 33 chr4 57054689 57054809 -98575311 + B3A SINE B2 81 198 0 1 1020 464 0 0 0 chr4 57054813 57054867 -98575253 + B1_Mm SINE Alu 92 145 -2 1 1020 444 291 73 44 chr4 57054870 57055075 -98575045 - ORSL DNA Tip100 -64 211 1 1 1020 396 340 18 98 chr4 57055075 57055352 -98574768 + MLT1K LTR MaLR 318 572 -23 1 1020 1294 128 98 0 chr4 57055829 57056032 -98574088 + URR1B DNA MER1_type 1 223 -2 1 1020 372 273 98 28 chr4 57056788 57056931 -98573189 + MER117 DNA MER1_type 2 154 -43 1 1020 258 220 141 99 chr4 57057282 57057403 -98572717 + RMER15 LTR ERVL 33 158 -417 1 1020 1045 203 157 22 chr4 57057394 57057661 -98572459 + RMER15 LTR ERVL 268 570 -5 1 1020 1020 312 80 43 chr4 57058280 57058904 -98571216 + L1MB8 LINE L1 5523 6169 -9 1 1020 549 302 39 75 chr4 57059917 57060171 -98569949 + LTR33A LTR ERVL 276 520 0 1 1020 212 200 0 16 chr4 57060779 57060840 -98569280 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1020 852 218 95 30 chr4 57060900 57061132 -98568988 - B4A SINE B4 -45 247 1 1 1020 225 0 0 0 chr4 57061162 57061187 -98568933 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1020 364 284 81 18 chr4 57061981 57062092 -98568028 + B1F2 SINE Alu 31 148 -1 1 1020 28 0 0 0 chr4 57062106 57062134 -98567986 + AT_rich Low_complexity Low_complexity 1 28 0 1 1020 199 243 202 68 chr4 57062372 57062535 -98567585 - L3 LINE CR1 -2220 2269 2085 1 1020 1224 137 107 5 chr4 57062704 57062909 -98567211 + URR1A DNA MER1_type 1 226 0 1 1020 321 304 92 18 chr4 57063352 57063516 -98566604 - MIR SINE MIR -51 211 36 1 1020 399 21 0 0 chr4 57064041 57064089 -98566031 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1020 459 247 171 13 chr4 57064161 57064313 -98565807 - B3 SINE B2 -38 178 3 1 1020 546 199 20 1 chr4 57064336 57064452 -98565668 - B1_Mur4 SINE Alu 0 120 5 1 1020 237 294 58 12 chr4 57064375 57064461 -98565659 - B4A SINE B4 -125 167 78 1 1020 219 278 0 0 chr4 57065041 57065114 -98565006 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 1 1020 2105 116 65 23 chr4 57065337 57065689 -98564431 + ORR1B2 LTR MaLR 1 367 0 1 1020 34 0 0 0 chr4 57065906 57065940 -98564180 + AT_rich Low_complexity Low_complexity 1 34 0 1 1020 211 284 30 0 chr4 57067010 57067077 -98563043 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1020 664 225 76 14 chr4 57067077 57067221 -98562899 - B4A SINE B4 -122 170 18 1 1020 273 29 0 0 chr4 57067338 57067372 -98562748 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1020 238 259 24 47 chr4 57067481 57067566 -98562554 + L1MC LINE L1 5593 5675 -2207 1 1020 286 272 24 12 chr4 57067757 57067839 -98562281 - RSINE1 SINE B4 -4 161 79 1 1020 279 258 16 16 chr4 57067963 57068026 -98562094 - RSINE1 SINE B4 -89 76 14 1 1020 1113 221 60 42 chr4 57068160 57068443 -98561677 - B4A SINE B4 -4 288 1 1 1020 670 268 98 29 chr4 57069054 57069258 -98560862 - B4 SINE B4 0 292 75 1 1020 485 281 9 67 chr4 57069301 57069526 -98560594 + RLTR42-int LTR ERVK 1189 1400 -4122 1 1020 356 269 0 0 chr4 57070052 57070130 -98559990 - B4A SINE B4 -213 79 2 1 1020 266 319 146 21 chr4 57070140 57070284 -98559836 - MIRb SINE MIR -93 175 14 1 1020 719 196 22 0 chr4 57070892 57071030 -98559090 + B1_Mur3 SINE Alu 1 141 -8 1 1020 597 28 0 0 chr4 57071036 57071107 -98559013 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 1 1020 732 243 63 2 chr4 57071154 57071330 -98558790 - B3A SINE B2 -25 191 5 1 1020 217 280 38 62 chr4 57071695 57071775 -98558345 + L3 LINE CR1 2524 2601 -1888 1 1020 221 312 0 0 chr4 57073006 57073054 -98557066 - L3 LINE CR1 -466 4023 3976 1 1020 435 323 109 77 chr4 57073113 57073524 -98556596 - L2c LINE L2 0 3387 2958 1 1020 355 254 58 17 chr4 57075480 57075600 -98554520 - MIR3 SINE MIR -6 202 78 1 1020 280 236 115 62 chr4 57079670 57079783 -98550337 + MLT1A1 LTR MaLR 228 389 -19 1 1020 258 127 35 52 chr4 57080528 57080586 -98549534 + B1_Mus2 SINE Alu 3 59 -88 1 1020 498 190 76 48 chr4 57080624 57080729 -98549391 + B1_Mur2 SINE Alu 40 147 -2 1 1020 192 337 33 44 chr4 57081740 57081830 -98548290 - MIR SINE MIR -117 145 57 1 1020 1338 62 73 0 chr4 57082739 57082916 -98547204 + B2_Mm2 SINE B2 2 191 -4 1 1020 200 270 66 57 chr4 57082981 57083087 -98547033 + L3 LINE CR1 4135 4241 -248 1 1020 510 329 54 0 chr4 57083118 57083285 -98546835 + MER58A DNA MER1_type 22 197 -27 1 1020 469 257 152 35 chr4 57083390 57083535 -98546585 - RSINE1 SINE B4 -2 163 2 1 1020 300 175 302 0 chr4 57084397 57084460 -98545660 - ID4_ SINE ID -1 82 1 1 1020 725 246 106 39 chr4 57084480 57084687 -98545433 - ID_B1 SINE B4 -3 221 1 1 1020 182 329 38 38 chr4 57085225 57085304 -98544816 - L3 LINE CR1 -561 3928 3850 1 1020 970 194 88 10 chr4 57087361 57087554 -98542566 + B3 SINE B2 3 210 -6 1 1020 1118 224 75 8 chr4 57087843 57088109 -98542011 + B4A SINE B4 5 288 -4 1 1020 327 49 0 0 chr4 57088124 57088165 -98541955 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1020 369 0 0 0 chr4 57088193 57088234 -98541886 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1020 258 284 79 11 chr4 57088245 57088334 -98541786 + PB1D10 SINE Alu 2 96 -21 1 1020 496 323 55 10 chr4 57088594 57088794 -98541326 + MER3 DNA MER1_type 1 209 0 1 1020 197 215 150 71 chr4 57089450 57089590 -98540530 - L3 LINE CR1 -3387 1102 952 1 1020 222 211 0 0 chr4 57090574 57090612 -98539508 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1020 1624 99 18 0 chr4 57091153 57091374 -98538746 + URR1B DNA MER1_type 1 225 0 1 1020 243 250 16 32 chr4 57092678 57092740 -98537380 - MER5A DNA MER1_type -23 166 106 1 1020 693 208 134 0 chr4 57092742 57092891 -98537229 - ID_B1 SINE B4 -54 170 2 1 1020 289 254 0 0 chr4 57092894 57092949 -98537171 - MER5A DNA MER1_type -115 74 20 1 1020 317 223 58 67 chr4 57093147 57093267 -98536853 + PB1D7 SINE Alu 2 120 0 1 1020 548 240 56 8 chr4 57095058 57095184 -98534936 + RSINE1 SINE B4 3 134 -31 1 1020 552 186 56 31 chr4 57095458 57095619 -98534501 + RSINE1 SINE B4 1 165 0 1 1020 204 40 0 0 chr4 57095619 57095644 -98534476 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1020 237 83 0 0 chr4 57096361 57096397 -98533723 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1020 432 228 120 0 chr4 57096398 57096490 -98533630 - ID_B1 SINE B4 -11 213 111 1 1020 569 255 0 9 chr4 57097874 57098014 -98532106 - B1F2 SINE Alu -9 140 9 1 1020 306 0 0 0 chr4 57098191 57098225 -98531895 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1020 483 248 217 0 chr4 57098225 57098354 -98531766 - RSINE1 SINE B4 -5 160 4 2 1020 585 24 36 0 chr4 57099425 57099508 -98530612 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1020 287 177 16 0 chr4 57100480 57100542 -98529578 + GA-rich Low_complexity Low_complexity 3 65 0 2 1020 757 180 163 37 chr4 57101886 57102076 -98528044 + B3 SINE B2 3 216 0 2 1020 1059 131 0 0 chr4 57102088 57102241 -98527879 + Lx4B LINE L1 6419 6571 -487 2 1020 469 280 48 36 chr4 57102247 57102441 -98527679 - MT2B LTR ERVL -342 259 2 2 1020 288 77 0 0 chr4 57102508 57102547 -98527573 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1020 2145 150 77 13 chr4 57102599 57102977 -98527143 + Lx5 LINE L1 6556 6957 -93 2 1020 573 301 48 123 chr4 57103038 57103084 -98527036 + B4A SINE B4 6 43 -249 2 1020 948 176 51 42 chr4 57103084 57103298 -98526822 + B3 SINE B2 1 216 0 2 1020 573 301 48 123 chr4 57103298 57103561 -98526559 + B4A SINE B4 44 292 0 2 1020 251 318 42 84 chr4 57104845 57105082 -98525038 + YREP_Mm Unknown Unknown 70 296 -1516 2 1020 673 250 0 0 chr4 57104960 57105100 -98525020 - ID_B1 SINE B4 -1 223 84 2 1020 195 42 0 0 chr4 57108121 57108145 -98521975 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1020 283 332 129 31 chr4 57108165 57108389 -98521731 + MIRb SINE MIR 14 259 -9 2 1020 307 298 9 28 chr4 57109337 57109444 -98520676 + MLT1A1 LTR MaLR 304 408 0 2 1020 586 260 48 67 chr4 57109792 57110002 -98520118 - B3 SINE B2 -6 210 5 2 1020 268 259 84 59 chr4 57110757 57110876 -98519244 - MIR SINE MIR -119 149 28 2 1020 2394 148 51 3 chr4 57110994 57111386 -98518734 + MTC LTR MaLR 1 411 -10 2 1020 2136 96 57 22 chr4 57111388 57111706 -98518414 + ORR1A4 LTR MaLR 1 329 0 2 1020 2946 231 108 117 chr4 57111706 57112035 -98518085 + ORR1A4-int LTR MaLR 1 358 -1151 2 1020 1078 54 39 0 chr4 57112035 57112165 -98517955 + B1_Mus2 SINE Alu 2 136 -11 2 1020 2946 231 108 117 chr4 57112165 57112189 -98517931 + ORR1A4-int LTR MaLR 359 379 -1130 2 1020 198 0 0 0 chr4 57112189 57112211 -98517909 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1020 6369 127 37 82 chr4 57112211 57113378 -98516742 + ORR1A4-int LTR MaLR 380 1963 0 2 1020 2243 97 31 9 chr4 57113378 57113700 -98516420 + ORR1A4 LTR MaLR 1 329 0 2 1020 470 133 13 0 chr4 57113713 57113788 -98516332 + MTD LTR MaLR 344 419 0 2 1020 677 313 30 81 chr4 57115015 57115286 -98514834 - B4A SINE B4 0 292 36 2 1020 888 180 65 25 chr4 57115514 57115713 -98514407 + B3 SINE B2 2 208 -8 2 1020 23 33 0 0 chr4 57115714 57115744 -98514376 + AT_rich Low_complexity Low_complexity 1 30 0 2 1020 186 71 0 0 chr4 57115829 57115857 -98514263 + (CCA)n Simple_repeat Simple_repeat 1 28 0 2 1020 1269 48 0 0 chr4 57116570 57116717 -98513403 + B1_Mus2 SINE Alu 1 147 0 2 1020 243 0 0 0 chr4 57116717 57116744 -98513376 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1020 1842 103 46 52 chr4 57117137 57117464 -98512656 + Lx LINE L1 6329 6653 -1 2 1020 372 313 216 11 chr4 57117464 57117724 -98512396 + L1MD LINE L1 4667 4982 -1164 2 1020 325 179 47 63 chr4 57118187 57118281 -98511839 + L1MB8 LINE L1 5160 5248 -898 2 1020 765 259 128 23 chr4 57118321 57118578 -98511542 - MER2 DNA MER2_type -21 324 41 2 1020 1245 316 60 11 chr4 57118594 57119308 -98510812 + L1MB8 LINE L1 5234 5992 -186 2 1020 195 42 0 0 chr4 57119337 57119361 -98510759 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1020 210 246 71 14 chr4 57119590 57119660 -98510460 + ID4_ SINE ID 1 74 -9 2 1020 452 268 79 7 chr4 57120854 57120993 -98509127 - RSINE1 SINE B4 -11 154 6 2 1020 440 303 53 0 chr4 57121657 57121789 -98508331 + ID_B1 SINE B4 86 224 0 2 1020 524 283 0 50 chr4 57121797 57121815 -98508305 + ID SINE ID 70 86 -138 2 1020 279 79 0 0 chr4 57121815 57121853 -98508267 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 2 1020 825 175 15 0 chr4 57121855 57121992 -98508128 + B1_Mur1 SINE Alu 6 144 -5 2 1020 592 239 52 83 chr4 57122023 57122215 -98507905 + B3A SINE B2 13 198 0 2 1020 242 263 17 34 chr4 57123969 57124028 -98506092 - ID SINE ID -137 87 30 2 1020 1114 55 184 0 chr4 57124028 57124047 -98506073 - B2_Mm1t SINE B2 0 193 162 2 1020 186 71 0 0 chr4 57124047 57124075 -98506045 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 2 1020 1114 55 184 0 chr4 57124075 57124218 -98505902 - B2_Mm1t SINE B2 -32 161 2 2 1020 349 277 56 56 chr4 57124225 57124246 -98505874 - PB1D10 SINE Alu 0 117 102 2 1020 1998 153 78 12 chr4 57124246 57124590 -98505530 - ORR1B2 LTR MaLR 0 367 1 2 1020 349 277 56 56 chr4 57124590 57124675 -98505445 - PB1D10 SINE Alu -16 101 11 2 1020 296 304 65 0 chr4 57124597 57124689 -98505431 - ID_B1 SINE B4 -49 175 78 2 1020 313 247 52 0 chr4 57124730 57124807 -98505313 - ID4 SINE ID -2 81 1 2 1020 207 357 176 13 chr4 57125391 57125550 -98504570 - L3 LINE CR1 -1184 3305 3121 2 1020 341 289 72 101 chr4 57126355 57126669 -98503451 + ORR1D1 LTR MaLR 35 325 -49 2 1020 896 243 0 41 chr4 57126859 57127056 -98503064 + B3 SINE B2 5 193 -23 2 1020 306 297 19 47 chr4 57127104 57127210 -98502910 + PB1D10 SINE Alu 8 110 -7 2 1020 180 273 86 49 chr4 57127210 57127291 -98502829 - MIRb SINE MIR -133 135 52 2 1020 732 145 35 35 chr4 57127291 57127434 -98502686 + B2_Mm2 SINE B2 53 195 0 2 1020 254 164 0 18 chr4 57127434 57127490 -98502630 + GA-rich Low_complexity Low_complexity 1 55 0 2 1020 351 315 99 22 chr4 57127653 57127835 -98502285 + L3 LINE CR1 2056 2251 -2238 2 1020 194 292 55 22 chr4 57127958 57128049 -98502071 + L4 LINE RTE 281 374 -1655 2 1020 263 301 13 27 chr4 57128230 57128305 -98501815 - tRNA-Ala-GCA tRNA tRNA -1 74 1 2 1020 320 247 205 93 chr4 57128755 57128799 -98501321 + ID SINE ID 38 80 -144 2 1020 207 0 0 0 chr4 57128799 57128822 -98501298 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1020 320 247 205 93 chr4 57128822 57128938 -98501182 + ID_B1 SINE B4 81 216 -8 2 1020 455 275 9 9 chr4 57128834 57128944 -98501176 + PB1D10 SINE Alu 6 115 -2 2 1020 400 360 83 45 chr4 57129049 57129565 -98500555 + MLT1G LTR MaLR 16 593 -2 2 1020 300 308 0 13 chr4 57130183 57130262 -98499858 + ID4 SINE ID 3 80 -3 2 1020 1392 64 16 26 chr4 57130309 57130502 -98499618 + B2_Mm2 SINE B2 3 193 -2 2 1020 1383 69 17 0 chr4 57131405 57131579 -98498541 - B2_Mm2 SINE B2 -14 181 5 2 1020 331 262 9 19 chr4 57131777 57131790 -98498330 + polypyrimidine Low_complexity Low_complexity 93 105 0 2 1020 360 0 0 0 chr4 57131790 57131830 -98498290 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1020 331 262 9 19 chr4 57131830 57131921 -98498199 + CT-rich Low_complexity Low_complexity 3 92 0 2 1020 191 146 24 0 chr4 57132404 57132445 -98497675 + G-rich Low_complexity Low_complexity 3 44 0 2 1020 426 271 27 107 chr4 57132497 57132646 -98497474 + B4A SINE B4 131 267 -25 2 1020 327 25 0 0 chr4 57132646 57132686 -98497434 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1020 377 321 79 79 chr4 57133064 57133221 -98496899 + MLT1B LTR MaLR 2 175 -215 2 1020 674 245 18 55 chr4 57133221 57133385 -98496735 + RSINE1 SINE B4 4 161 -4 2 1020 377 321 79 79 chr4 57133385 57133420 -98496700 + MLT1B LTR MaLR 176 207 -183 2 1020 216 97 0 0 chr4 57133420 57133451 -98496669 + (CAGGA)n Simple_repeat Simple_repeat 2 32 0 2 1020 377 321 79 79 chr4 57133451 57133534 -98496586 + MLT1B LTR MaLR 208 278 -112 2 1020 234 0 0 0 chr4 57133653 57133679 -98496441 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 2 1020 181 135 140 88 chr4 57133748 57133805 -98496315 + MIRm SINE MIR 118 177 -99 2 1020 387 0 0 0 chr4 57134034 57134077 -98496043 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1020 868 248 69 0 chr4 57134338 57134540 -98495580 + B3 SINE B2 1 216 0 2 1020 694 184 3 8 chr4 57134564 57134698 -98495422 + B1_Mur4 SINE Alu 1 137 -13 2 1020 218 56 0 27 chr4 57134698 57134735 -98495385 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1020 204 40 0 0 chr4 57135704 57135729 -98494391 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 2 1020 359 256 46 15 chr4 57136557 57136688 -98493432 - L1ME2z LINE L1 -441 6003 5869 2 1020 379 191 135 0 chr4 57136730 57136819 -98493301 + PB1 SINE Alu 1 101 -26 2 1020 243 0 0 0 chr4 57136843 57136870 -98493250 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 1020 756 112 0 29 chr4 57136870 57137008 -98493112 + (GGGA)n Simple_repeat Simple_repeat 3 136 0 2 1020 1253 79 11 0 chr4 57137008 57137186 -98492934 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1020 1212 61 0 7 chr4 57137781 57137930 -98492190 - B1_Mus1 SINE Alu 0 148 1 2 1020 217 231 0 0 chr4 57138187 57138226 -98491894 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1020 241 305 198 25 chr4 57138841 57138962 -98491158 - MLT1A LTR MaLR -8 366 225 2 1020 413 245 160 0 chr4 57138979 57139073 -98491047 - B3 SINE B2 -4 212 104 2 1020 643 302 56 19 chr4 57139314 57139530 -98490590 - B4A SINE B4 -68 224 1 2 1020 573 213 109 6 chr4 57140309 57140474 -98489646 + L1MB8 LINE L1 5850 6031 -147 2 1020 617 239 8 23 chr4 57140792 57140925 -98489195 + B1F SINE Alu 18 148 -1 2 1020 395 119 0 15 chr4 57140925 57140993 -98489127 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 2 1020 1107 169 63 24 chr4 57141157 57141363 -98488757 + B3 SINE B2 2 215 -1 2 1020 261 210 105 147 chr4 57141925 57142020 -98488100 + B4A SINE B4 202 292 0 2 1020 180 77 0 0 chr4 57142099 57142125 -98487995 + (GGTTG)n Simple_repeat Simple_repeat 3 28 0 2 1020 1005 101 29 0 chr4 57142139 57142277 -98487843 - B1_Mur3 SINE Alu -6 143 2 2 1020 353 236 40 60 chr4 57142305 57142433 -98487687 - PB1D10 SINE Alu -2 118 1 2 1020 281 241 101 0 chr4 57143509 57143588 -98486532 + L2b LINE L2 3003 3089 -286 2 1020 655 299 109 79 chr4 57144220 57144415 -98485705 + B4 SINE B4 5 216 -76 2 1020 309 82 0 0 chr4 57144415 57144464 -98485656 + (CACTA)n Simple_repeat Simple_repeat 4 52 0 3 1020 655 299 61 17 chr4 57144464 57144560 -98485560 + B4 SINE B4 217 277 -15 2 1020 420 71 0 0 chr4 57144561 57144617 -98485503 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1020 298 250 0 136 chr4 57144634 57144722 -98485398 + B4 SINE B4 213 288 -4 2 1020 213 211 0 0 chr4 57144759 57144811 -98485309 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1020 278 275 37 12 chr4 57145158 57145239 -98484881 + ID4_ SINE ID 1 83 0 3 1020 219 36 0 0 chr4 57145486 57145514 -98484606 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1020 523 229 83 8 chr4 57145888 57146020 -98484100 + B1F1 SINE Alu 3 144 -5 3 1020 604 273 14 0 chr4 57146213 57146356 -98483764 + RSINE1 SINE B4 16 160 -5 3 1020 21 36 0 0 chr4 57146360 57146388 -98483732 + AT_rich Low_complexity Low_complexity 1 28 0 3 1020 328 235 41 0 chr4 57146530 57146628 -98483492 + L1MB3 LINE L1 5871 5972 -211 3 1020 302 287 10 10 chr4 57146879 57146981 -98483139 + L1MB3 LINE L1 5986 6087 -96 3 1021 242 313 14 43 chr4 57147912 57147982 -98482138 + ID4_ SINE ID 16 83 0 3 1021 998 155 7 0 chr4 57148160 57148308 -98481812 + B1_Mur4 SINE Alu 1 149 -1 3 1021 194 211 0 0 chr4 57148560 57148598 -98481522 + MIR SINE MIR 73 110 -152 3 1021 237 119 0 0 chr4 57148985 57149027 -98481093 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1021 432 305 179 43 chr4 57149452 57149781 -98480339 - MTD LTR MaLR -44 375 2 3 1021 405 0 0 0 chr4 57150181 57150226 -98479894 + (GGA)n Simple_repeat Simple_repeat 1 45 0 3 1021 836 217 105 11 chr4 57151225 57151416 -98478704 - B3 SINE B2 -7 209 1 3 1021 360 0 0 0 chr4 57151448 57151488 -98478632 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1021 270 0 0 0 chr4 57151768 57151798 -98478322 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1021 1105 58 0 28 chr4 57151798 57151941 -98478179 - B1_Mus1 SINE Alu -9 139 1 3 1021 210 37 0 0 chr4 57152180 57152207 -98477913 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1021 272 260 28 57 chr4 57152523 57152629 -98477491 + L3 LINE CR1 3825 3927 -562 3 1021 43 71 0 0 chr4 57155890 57155975 -98474145 + GC_rich Low_complexity Low_complexity 1 85 0 3 1021 264 228 40 20 chr4 57156040 57156192 -98473928 + (CCG)n Simple_repeat Simple_repeat 2 156 0 3 1021 23 78 0 0 chr4 57156357 57156408 -98473712 + GC_rich Low_complexity Low_complexity 1 51 0 3 1021 26 74 0 0 chr4 57156460 57156514 -98473606 + GC_rich Low_complexity Low_complexity 1 54 0 3 1021 198 0 0 0 chr4 57156830 57156852 -98473268 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1021 217 209 130 29 chr4 57156863 57156932 -98473188 + MIR3 SINE MIR 120 195 -13 3 1021 217 323 61 20 chr4 57156937 57157035 -98473085 - MIR3 SINE MIR -14 194 93 3 1021 420 294 102 7 chr4 57157327 57157474 -98472646 - MIRb SINE MIR -3 265 105 3 1021 242 285 92 59 chr4 57157628 57157781 -98472339 - MIRb SINE MIR -25 243 86 3 1021 886 57 8 31 chr4 57158094 57158222 -98471898 + URR1B DNA MER1_type 101 225 0 3 1021 456 267 35 46 chr4 57158222 57158268 -98471852 - CYRA11_Mm Unknown Y-chromosome -449 168 125 3 1021 390 291 150 12 chr4 57158224 57158391 -98471729 + MLT1D LTR MaLR 307 496 -9 3 1021 213 39 0 0 chr4 57158861 57158887 -98471233 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1021 1279 20 7 0 chr4 57158887 57159033 -98471087 - B1_Mus2 SINE Alu 0 147 1 3 1021 1090 246 57 14 chr4 57159127 57159407 -98470713 - B4A SINE B4 0 292 1 3 1021 682 258 142 14 chr4 57159502 57159760 -98470360 + MLT1A LTR MaLR 75 374 0 3 1021 1329 144 9 39 chr4 57159870 57160101 -98470019 - URR1B DNA MER1_type 0 225 2 3 1021 932 275 48 65 chr4 57160593 57160885 -98469235 - B4 SINE B4 -5 287 1 3 1021 429 235 137 36 chr4 57160997 57161014 -98469106 + CYRA11_Mm Unknown Y-chromosome 158 191 -426 3 1021 1039 105 199 0 chr4 57161014 57161195 -98468925 - URR1A DNA MER1_type -3 223 7 3 1021 784 290 137 44 chr4 57161195 57161538 -98468582 + MLT1K LTR MaLR 122 496 -99 3 1021 328 261 238 12 chr4 57162404 57162568 -98467552 - RMER15 LTR ERVL -39 536 336 3 1021 566 155 35 6 chr4 57162826 57162995 -98467125 + (TG)n Simple_repeat Simple_repeat 2 175 0 3 1021 599 202 11 11 chr4 57163009 57163276 -98466844 + (TG)n Simple_repeat Simple_repeat 1 267 0 3 1021 393 161 46 0 chr4 57163289 57163419 -98466701 + (TG)n Simple_repeat Simple_repeat 1 136 0 3 1021 826 250 75 45 chr4 57163466 57163734 -98466386 - B4A SINE B4 -14 278 3 3 1021 243 0 0 0 chr4 57163734 57163761 -98466359 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 3 1021 257 0 30 0 chr4 57163784 57163817 -98466303 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1021 670 277 7 13 chr4 57163835 57163985 -98466135 - RSINE1 SINE B4 -15 150 2 3 1021 581 227 73 0 chr4 57164054 57164164 -98465956 - B1_Mur4 SINE Alu -31 119 2 3 1021 325 250 124 44 chr4 57164188 57164301 -98465819 + MER3 DNA MER1_type 88 209 0 3 1021 250 250 145 14 chr4 57164477 57164546 -98465574 + B1F1 SINE Alu 11 88 -61 3 1021 2271 183 85 38 chr4 57164880 57165375 -98464745 - RLTR11A2 LTR ERVK -8 519 2 3 1021 690 191 79 8 chr4 57165867 57165994 -98464126 + B1_Mur4 SINE Alu 3 138 -12 3 1021 225 0 0 0 chr4 57165995 57166020 -98464100 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1021 200 320 68 30 chr4 57166341 57166473 -98463647 - MIRb SINE MIR -130 138 2 3 1021 195 42 0 0 chr4 57166695 57166719 -98463401 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 3 1021 459 0 0 0 chr4 57167737 57167788 -98462332 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1021 996 183 32 11 chr4 57168048 57168236 -98461884 + MTD LTR MaLR 20 211 -208 3 1021 720 161 92 0 chr4 57168236 57168366 -98461754 + B1_Mur2 SINE Alu 2 143 -6 3 1021 1074 77 35 14 chr4 57168375 57168520 -98461600 + B1_Mus1 SINE Alu 1 148 0 3 1021 243 297 0 0 chr4 57168529 57168620 -98461500 + A-rich Low_complexity Low_complexity 1 91 0 3 1021 1006 196 66 19 chr4 57168626 57168839 -98461281 + MTD LTR MaLR 196 418 -1 3 1021 414 0 0 0 chr4 57169187 57169233 -98460887 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1021 515 263 176 6 chr4 57169300 57169476 -98460644 + MIRb SINE MIR 63 268 0 3 1021 559 301 106 58 chr4 57170063 57170440 -98459680 + L1M3 LINE L1 4850 5244 -896 3 1021 527 249 94 11 chr4 57170468 57170635 -98459485 + B3 SINE B2 1 197 -1 3 1021 216 0 0 0 chr4 57170638 57170662 -98459458 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1021 381 267 65 29 chr4 57170662 57170801 -98459319 - MER2 DNA MER2_type -137 208 65 3 1021 227 302 0 45 chr4 57170817 57170883 -98459237 - BC1_Mm scRNA scRNA -83 69 7 3 1021 842 177 149 0 chr4 57171132 57171313 -98458807 - B3 SINE B2 -7 209 2 3 1021 275 71 24 0 chr4 57171461 57171503 -98458617 + (TCC)n Simple_repeat Simple_repeat 3 45 0 3 1021 319 197 64 26 chr4 57171556 57171634 -98458486 - ID4_ SINE ID -1 82 2 3 1021 253 297 130 11 chr4 57171643 57171735 -98458385 - PB1D10 SINE Alu -1 116 14 3 1021 530 155 25 127 chr4 57171762 57171880 -98458240 - PB1D10 SINE Alu -11 106 1 3 1021 412 244 56 172 chr4 57171880 57171971 -98458149 - ID SINE ID -155 69 2 3 1021 1325 196 162 53 chr4 57172403 57172720 -98457400 - MTD LTR MaLR 0 419 45 3 1021 1502 78 0 10 chr4 57172720 57172915 -98457205 + B2_Mm2 SINE B2 2 194 -1 3 1021 1325 196 162 53 chr4 57172915 57172974 -98457146 - MTD LTR MaLR -375 44 2 3 1021 433 321 103 19 chr4 57173012 57173225 -98456895 - MLT1M LTR MaLR -348 324 94 3 1021 634 252 7 44 chr4 57173955 57174092 -98456028 - B1F1 SINE Alu -7 142 11 3 1021 311 338 19 115 chr4 57174092 57174112 -98456008 - B4A SINE B4 -72 220 79 3 1021 1220 26 13 0 chr4 57174231 57174382 -98455738 + (TTTC)n Simple_repeat Simple_repeat 3 155 0 3 1021 871 188 188 0 chr4 57174382 57174552 -98455568 - B3 SINE B2 -14 202 1 3 1021 328 317 20 46 chr4 57174565 57174717 -98455403 - MER3 DNA MER1_type -60 149 2 3 1021 1297 27 0 0 chr4 57174773 57174921 -98455199 + B1_Mus1 SINE Alu 1 148 0 3 1021 252 219 0 110 chr4 57175397 57175479 -98454641 + ID_B1 SINE B4 124 196 -28 3 1021 466 180 29 48 chr4 57175439 57175544 -98454576 + B1_Mur2 SINE Alu 47 149 0 3 1021 439 209 338 0 chr4 57176567 57176715 -98453405 + B3A SINE B2 1 198 0 3 1021 292 279 51 103 chr4 57176734 57176890 -98453230 + RSINE1 SINE B4 3 150 -15 3 1021 378 0 0 0 chr4 57176906 57176948 -98453172 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1021 183 115 0 0 chr4 57178098 57178124 -98451996 - L2b LINE L2 -17 3358 3333 3 1021 408 216 167 0 chr4 57178136 57178238 -98451882 - PB1D7 SINE Alu -1 119 1 3 1021 218 200 0 20 chr4 57178418 57178469 -98451651 + G-rich Low_complexity Low_complexity 1 50 0 3 1021 235 0 0 54 chr4 57178993 57179030 -98451090 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1021 715 193 15 15 chr4 57179031 57179168 -98450952 - B1_Mus1 SINE Alu -6 142 6 3 1021 404 253 11 0 chr4 57179559 57179646 -98450474 - MER5B DNA MER1_type 0 178 91 3 1021 359 108 46 0 chr4 57180620 57180685 -98449435 - L1Md_F2 LINE L1 -1 6581 6514 3 1021 531 163 30 6 chr4 57180787 57180954 -98449166 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 1021 514 166 28 17 chr4 57180966 57181144 -98448976 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1021 457 251 133 94 chr4 57181243 57181423 -98448697 - B4A SINE B4 -20 272 86 3 1021 615 94 226 0 chr4 57181454 57181560 -98448560 - B3 SINE B2 -86 130 1 3 1021 410 283 0 29 chr4 57181563 57181665 -98448455 - B4A SINE B4 -192 100 2 3 1021 382 322 19 45 chr4 57181777 57181933 -98448187 + RSINE1 SINE B4 14 165 0 3 1021 1014 122 0 0 chr4 57181945 57182125 -98447995 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1021 3230 133 127 10 chr4 57182340 57182632 -98447488 - RMER6C LTR ERVK 0 690 353 4 1021 441 0 0 0 chr4 57182632 57182681 -98447439 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1021 3230 133 127 10 chr4 57182681 57183004 -98447116 - RMER6C LTR ERVK -338 352 3 4 1021 212 222 0 82 chr4 57183053 57183102 -98447018 + B1_Mus2 SINE Alu 82 126 -21 4 1021 1011 200 55 5 chr4 57183207 57183408 -98446712 + B3 SINE B2 1 211 -5 4 1021 23 33 0 0 chr4 57183414 57183444 -98446676 + AT_rich Low_complexity Low_complexity 1 30 0 4 1021 420 299 25 25 chr4 57183593 57183713 -98446407 - PB1D7 SINE Alu 0 120 1 4 1021 576 0 0 0 chr4 57183718 57183782 -98446338 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1021 266 81 0 42 chr4 57183782 57183834 -98446286 - B1_Mm SINE Alu -10 137 89 4 1021 200 299 69 78 chr4 57184458 57184574 -98445546 + MIRb SINE MIR 128 242 -26 4 1021 243 227 132 33 chr4 57185144 57185235 -98444885 - L2b LINE L2 -6 3369 3270 4 1021 1165 111 11 17 chr4 57185314 57185488 -98444632 + B2_Mm1t SINE B2 3 175 -18 4 1021 365 96 285 52 chr4 57185542 57185656 -98444464 + B2_Mm2 SINE B2 47 190 -5 4 1021 250 87 43 0 chr4 57185706 57185752 -98444368 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1021 356 275 80 84 chr4 57185869 57186032 -98444088 - MLT1I LTR MaLR -171 240 71 4 1021 568 249 23 8 chr4 57186226 57186370 -98443750 - RSINE1 SINE B4 -16 149 3 4 1021 742 234 83 0 chr4 57186753 57186945 -98443175 + B3 SINE B2 2 209 -7 4 1021 264 221 0 93 chr4 57187001 57187076 -98443044 + ID4 SINE ID 3 70 -13 4 1021 183 42 0 0 chr4 57187168 57187192 -98442928 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1021 293 127 208 14 chr4 57187315 57187387 -98442733 - PB1D10 SINE Alu 0 117 32 4 1021 333 302 151 0 chr4 57187710 57187829 -98442291 - L1MEf LINE L1 -5124 1076 940 4 1021 359 160 13 0 chr4 57188016 57188091 -98442029 + GA-rich Low_complexity Low_complexity 3 78 0 4 1021 393 302 102 30 chr4 57188660 57188827 -98441293 - MER3 DNA MER1_type -4 205 27 4 1021 225 291 0 0 chr4 57188891 57188946 -98441174 + CT-rich Low_complexity Low_complexity 4 58 0 4 1021 495 279 132 0 chr4 57189562 57189752 -98440368 + MLT1A0 LTR MaLR 8 222 -143 4 1021 1184 50 0 0 chr4 57189900 57190040 -98440080 + B1_Mus1 SINE Alu 5 144 -4 4 1021 585 278 0 20 chr4 57190650 57190797 -98439323 + RSINE1 SINE B4 3 146 -19 4 1021 282 29 0 0 chr4 57190822 57190857 -98439263 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1021 249 188 0 111 chr4 57191308 57191362 -98438758 - B1F SINE Alu -8 141 94 4 1021 188 345 89 18 chr4 57191480 57191592 -98438528 - MIRc SINE MIR -99 169 50 4 1021 1654 125 19 58 chr4 57191673 57192006 -98438114 - ORR1B2 LTR MaLR -74 304 3 4 1021 432 0 0 0 chr4 57192223 57192271 -98437849 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1021 277 207 0 6 chr4 57192743 57192798 -98437322 + B1F SINE Alu 19 71 -46 4 1021 400 275 58 0 chr4 57192911 57193031 -98437089 - PB1 SINE Alu 0 127 1 4 1021 327 311 9 36 chr4 57193128 57193238 -98436882 + PB1D10 SINE Alu 11 117 0 4 1021 469 290 128 27 chr4 57193601 57193750 -98436370 + ID_B1 SINE B4 12 175 -49 4 1021 474 188 0 0 chr4 57193789 57193890 -98436230 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1021 197 182 21 83 chr4 57193999 57194047 -98436073 - L2b LINE L2 -220 3155 3111 4 1021 320 215 25 25 chr4 57194630 57194711 -98435409 + B3A SINE B2 113 193 -5 4 1021 1001 144 6 0 chr4 57194778 57194952 -98435168 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 4 1021 1265 58 64 0 chr4 57194952 57195125 -98434995 - B2_Mm2 SINE B2 -10 185 2 4 1021 523 247 95 50 chr4 57195187 57195226 -98434894 - B2_Mm2 SINE B2 -7 188 137 4 1021 197 65 0 31 chr4 57195226 57195258 -98434862 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1021 640 247 95 50 chr4 57195258 57195397 -98434723 - B3A SINE B2 -54 144 2 4 1021 344 187 84 42 chr4 57195408 57195503 -98434617 - L1MB8 LINE L1 -237 5941 5843 4 1021 664 248 151 20 chr4 57195528 57195779 -98434341 - B4A SINE B4 -7 285 2 4 1021 261 350 35 35 chr4 57195782 57195924 -98434196 - L1M4 LINE L1 -314 5870 5729 4 1021 212 172 17 0 chr4 57196051 57196109 -98434011 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 4 1021 231 320 197 83 chr4 57196946 57197297 -98432823 + MLT1N2 LTR MaLR 49 439 -123 4 1021 285 250 131 0 chr4 57197518 57197602 -98432518 + PB1D10 SINE Alu 2 96 -21 4 1021 1124 193 29 0 chr4 57197622 57197829 -98432291 + B3 SINE B2 2 214 -2 4 1021 723 296 36 79 chr4 57197857 57198161 -98431959 + B4A SINE B4 2 292 0 4 1021 206 150 0 24 chr4 57198172 57198213 -98431907 + (CATA)n Simple_repeat Simple_repeat 4 43 0 4 1021 555 78 0 0 chr4 57198725 57198802 -98431318 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1021 628 188 29 59 chr4 57199055 57199191 -98430929 + MTE2a LTR MaLR 248 379 0 4 1021 519 288 115 35 chr4 57199191 57199479 -98430641 + MLT1A LTR MaLR 64 374 0 4 1021 695 230 67 28 chr4 57199521 57199700 -98430420 - B3A SINE B2 -11 187 2 4 1021 623 252 27 0 chr4 57199723 57199870 -98430250 - B3A SINE B2 -47 151 1 4 1021 1269 41 0 0 chr4 57199896 57200043 -98430077 - B1_Mus2 SINE Alu 0 147 1 4 1021 1257 41 0 0 chr4 57200607 57200754 -98429366 + B1_Mus1 SINE Alu 2 148 0 4 1021 270 0 0 0 chr4 57200774 57200804 -98429316 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 4 1021 646 240 69 74 chr4 57200903 57201092 -98429028 + B3A SINE B2 11 198 0 4 1021 311 342 40 64 chr4 57201166 57201291 -98428829 + MLT1J LTR MaLR 207 328 -184 4 1021 254 333 95 24 chr4 57202106 57202232 -98427888 + MLT1J-int LTR MaLR 795 929 -458 4 1021 1718 16 5 0 chr4 57202396 57202588 -98427532 + B2_Mm1a SINE B2 1 193 0 4 1021 308 255 70 133 chr4 57202606 57202764 -98427356 + MT2B LTR ERVL 131 278 -323 4 1021 783 178 0 23 chr4 57202658 57202790 -98427330 + B1_Mur3 SINE Alu 20 148 -1 4 1021 375 274 27 0 chr4 57203011 57203084 -98427036 - B1_Mur1 SINE Alu -48 101 27 4 1021 221 205 106 82 chr4 57203082 57203167 -98426953 - RSINE1 SINE B4 -77 88 2 4 1021 316 152 0 29 chr4 57203244 57203312 -98426808 - ID SINE ID -158 66 1 4 1021 210 180 0 0 chr4 57206153 57206214 -98423906 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1021 237 33 0 0 chr4 57206611 57206641 -98423479 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 4 1021 411 253 286 0 chr4 57207480 57207634 -98422486 + MTEa LTR MaLR 179 376 -3 4 1021 231 292 35 62 chr4 57208214 57208327 -98421793 + MIR SINE MIR 23 132 -76 4 1021 626 236 43 0 chr4 57208395 57208535 -98421585 - B1_Mur1 SINE Alu -2 147 2 4 1021 180 0 0 0 chr4 57208868 57208888 -98421232 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1021 735 285 57 97 chr4 57209758 57210252 -98419868 - L1MB3 LINE L1 -18 6165 5692 4 1021 256 273 99 33 chr4 57211199 57211290 -98418830 + RSINE1 SINE B4 44 140 -25 4 1021 396 0 0 0 chr4 57211308 57211352 -98418768 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1021 1092 198 6 0 chr4 57211364 57211546 -98418574 + B3 SINE B2 33 215 -1 4 1021 220 323 70 41 chr4 57213098 57213269 -98416851 - MIRb SINE MIR -56 212 37 4 1021 306 267 27 62 chr4 57216177 57216289 -98413831 - PB1D10 SINE Alu -9 108 1 4 1021 292 324 73 45 chr4 57216520 57216630 -98413490 + PB1D10 SINE Alu 5 117 0 4 1021 184 273 65 0 chr4 57216752 57216829 -98413291 - MIR SINE MIR -174 88 7 4 1021 234 0 0 0 chr4 57218366 57218392 -98411728 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1021 195 42 0 0 chr4 57218392 57218416 -98411704 + (TATATG)n Simple_repeat Simple_repeat 2 25 0 4 1021 201 39 0 0 chr4 57219327 57219353 -98410767 + (CAA)n Simple_repeat Simple_repeat 3 28 0 4 1021 211 125 0 24 chr4 57220045 57220086 -98410034 + (CAAAAA)n Simple_repeat Simple_repeat 5 44 0 4 1021 215 211 0 37 chr4 57220140 57220194 -98409926 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 4 1021 839 206 84 5 chr4 57220212 57220402 -98409718 - B3 SINE B2 -11 205 1 4 1021 487 316 130 78 chr4 57220502 57220849 -98409271 + MTEb LTR MaLR 1 365 -14 4 1021 907 149 7 0 chr4 57220857 57220998 -98409122 + B1_Mus1 SINE Alu 1 142 -6 4 1021 21 0 0 0 chr4 57221316 57221337 -98408783 + AT_rich Low_complexity Low_complexity 1 21 0 4 1021 23 0 0 0 chr4 57221615 57221638 -98408482 + AT_rich Low_complexity Low_complexity 1 23 0 4 1021 1436 191 86 0 chr4 57222219 57222497 -98407623 + ORR1D1 LTR MaLR 1 302 -72 4 1021 995 112 6 56 chr4 57223207 57223387 -98406733 - L1Md_F2 LINE L1 0 6582 6412 4 1021 4162 58 0 0 chr4 57223387 57223920 -98406200 + L1_Mus1 LINE L1 5846 6378 -189 4 1021 2317 72 48 17 chr4 57223920 57224268 -98405852 + ORR1A2 LTR MaLR 1 374 0 4 1021 640 278 112 44 chr4 57224458 57224658 -98405462 + RMER20B LTR ERVK 182 414 -213 4 1021 225 0 0 0 chr4 57224658 57224683 -98405437 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1021 640 270 125 33 chr4 57224683 57224783 -98405337 + RMER20B LTR ERVK 415 529 -98 4 1021 198 133 0 0 chr4 57224870 57224900 -98405220 + MIRb SINE MIR 223 252 -16 4 1021 352 287 33 57 chr4 57224974 57225096 -98405024 + ID_B1 SINE B4 104 222 -2 4 1021 686 206 111 91 chr4 57225104 57225302 -98404818 + B3 SINE B2 15 216 0 4 1021 312 206 16 16 chr4 57225345 57225409 -98404711 + ID4_ SINE ID 3 66 -17 5 1021 394 245 85 0 chr4 57225960 57226054 -98404066 - B1F1 SINE Alu -42 107 6 5 1021 601 235 21 42 chr4 57226103 57226245 -98403875 + RSINE1 SINE B4 3 141 -24 5 1021 206 143 61 45 chr4 57226245 57226311 -98403809 + (ATGTG)n Simple_repeat Simple_repeat 1 67 0 5 1021 214 128 62 21 chr4 57226259 57226307 -98403813 + (TAATG)n Simple_repeat Simple_repeat 4 53 0 5 1021 381 248 28 47 chr4 57226356 57226462 -98403658 - PB1D7 SINE Alu 0 120 17 5 1021 383 228 114 0 chr4 57226465 57226544 -98403576 - PB1D10 SINE Alu -28 89 2 5 1021 226 282 8 8 chr4 57226887 57227019 -98403101 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 5 1021 377 190 0 132 chr4 57227186 57227277 -98402843 - PB1 SINE Alu -30 97 19 5 1021 801 257 36 16 chr4 57227320 57227343 -98402777 - B3A SINE B2 0 198 172 5 1021 402 100 0 0 chr4 57227343 57227403 -98402717 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1021 801 257 36 16 chr4 57227403 57227573 -98402547 - B3A SINE B2 -27 171 1 5 1021 184 370 10 29 chr4 57227596 57227699 -98402421 + MIR SINE MIR 52 152 -56 5 1021 186 326 86 11 chr4 57227776 57227869 -98402251 + MIRc SINE MIR 151 250 -18 5 1021 218 314 111 28 chr4 57228547 57228727 -98401393 + MIRb SINE MIR 12 206 -62 5 1021 322 326 67 20 chr4 57229162 57229312 -98400808 + RSINE1 SINE B4 3 159 -6 5 1021 189 107 0 0 chr4 57229722 57229750 -98400370 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 5 1021 1220 54 0 0 chr4 57229753 57229900 -98400220 - B1_Mus2 SINE Alu 0 147 1 5 1021 328 277 0 57 chr4 57230599 57230687 -98399433 - PB1D10 SINE Alu -7 110 28 5 1021 375 281 0 0 chr4 57231707 57231789 -98398331 + ID4 SINE ID 2 83 0 5 1021 217 374 0 21 chr4 57231986 57232079 -98398041 - B2_Mm2 SINE B2 -92 103 13 5 1021 564 309 107 36 chr4 57232275 57232500 -98397620 - B4A SINE B4 -4 288 48 5 1021 344 297 0 0 chr4 57233447 57233521 -98396599 + RSINE1 SINE B4 3 76 -89 5 1021 268 325 24 49 chr4 57234541 57234664 -98395456 + PB1D7 SINE Alu 1 120 0 5 1021 715 264 65 40 chr4 57235377 57235653 -98394467 - B4A SINE B4 -9 283 1 5 1021 627 216 57 7 chr4 57235829 57235969 -98394151 + B1_Mur4 SINE Alu 1 147 -3 5 1021 369 265 30 130 chr4 57236080 57236249 -98393871 - MER5A1 DNA MER1_type -1 165 14 5 1021 306 265 59 0 chr4 57237378 57237446 -98392674 - B1F1 SINE Alu -8 141 70 5 1021 459 0 0 0 chr4 57237587 57237638 -98392482 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1021 929 102 0 132 chr4 57237638 57237797 -98392323 - B1_Mus1 SINE Alu -10 138 1 5 1021 785 107 196 25 chr4 57237806 57237969 -98392151 - B2_Mm2 SINE B2 -3 192 2 5 1021 450 256 327 5 chr4 57238023 57238243 -98391877 - B4 SINE B4 0 292 2 5 1021 353 191 73 0 chr4 57239059 57239127 -98390993 - PB1 SINE Alu -28 99 27 5 1021 230 244 165 13 chr4 57239394 57239473 -98390647 - BC1_Mm scRNA scRNA -60 92 2 5 1021 189 0 0 0 chr4 57239660 57239681 -98390439 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1021 366 205 72 0 chr4 57239797 57239880 -98390240 + B1_Mur2 SINE Alu 61 149 0 5 1021 1201 208 0 9 chr4 57239955 57240173 -98389947 + B3 SINE B2 1 216 0 5 1021 640 334 107 44 chr4 57241346 57241665 -98388455 - MER2 DNA MER2_type -6 339 1 5 1021 267 31 0 0 chr4 57244602 57244634 -98385486 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1021 433 291 157 33 chr4 57244635 57244756 -98385364 - RSINE1 SINE B4 -29 136 1 5 1021 289 265 136 10 chr4 57245482 57245585 -98384535 + PB1D10 SINE Alu 1 116 -1 5 1021 244 200 29 0 chr4 57245903 57245973 -98384147 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1021 797 226 141 103 chr4 57245974 57246103 -98384017 - B4A SINE B4 0 292 170 5 1021 198 0 0 0 chr4 57246103 57246125 -98383995 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 5 1021 797 226 141 103 chr4 57246125 57246257 -98383863 - B4A SINE B4 -123 169 21 5 1021 229 266 15 15 chr4 57246332 57246397 -98383723 + MIR SINE MIR 62 126 -82 5 1021 185 0 0 39 chr4 57246626 57246652 -98383468 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1021 1172 82 0 0 chr4 57246657 57246804 -98383316 - B1_Mus1 SINE Alu 0 148 2 5 1021 265 321 12 0 chr4 57247445 57247526 -98382594 - ID4_ SINE ID 0 83 2 5 1021 383 312 26 18 chr4 57247668 57247782 -98382338 - PB1D10 SINE Alu -2 115 1 5 1021 382 250 82 15 chr4 57247785 57247919 -98382201 + L1MA5A LINE L1 6139 6281 -16 5 1021 856 216 6 0 chr4 57248448 57248610 -98381510 - RSINE1 SINE B4 0 165 3 5 1021 1726 21 0 0 chr4 57248987 57249178 -98380942 + B2_Mm1a SINE B2 2 192 -1 5 1021 593 223 84 45 chr4 57249716 57249871 -98380249 + RSINE1 SINE B4 3 163 -2 5 1021 1267 96 11 22 chr4 57249921 57250102 -98380018 + B2_Mm1t SINE B2 1 179 -14 5 1021 333 131 28 20 chr4 57250147 57250253 -98379867 + B2_Mm2 SINE B2 47 189 -6 5 1021 331 200 78 3 chr4 57250367 57250456 -98379664 + MLT1H1 LTR MaLR 420 536 -55 5 1021 22 0 0 0 chr4 57251819 57251841 -98378279 + AT_rich Low_complexity Low_complexity 1 22 0 5 1021 243 347 67 67 chr4 57253263 57253516 -98376604 - MIRb SINE MIR -2 266 14 5 1021 206 211 17 34 chr4 57253727 57253786 -98376334 + (CAAAG)n Simple_repeat Simple_repeat 2 59 0 5 1021 303 301 87 17 chr4 57254163 57254278 -98375842 - MIRb SINE MIR -34 234 112 5 1021 468 0 0 0 chr4 57254459 57254511 -98375609 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1021 859 185 73 87 chr4 57254515 57254734 -98375386 - B4 SINE B4 -7 285 70 5 1021 276 284 79 11 chr4 57255911 57256000 -98374120 + MTEa LTR MaLR 283 377 -2 5 1021 275 310 137 48 chr4 57256620 57256847 -98373273 + MIR SINE MIR 21 267 -1 5 1021 301 278 475 51 chr4 57257243 57257413 -98372707 + MER44A DNA MER2_type 6 248 -91 5 1021 414 0 0 0 chr4 57257422 57257468 -98372652 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1021 186 103 0 0 chr4 57257698 57257727 -98372393 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 5 1021 657 63 0 0 chr4 57258121 57258216 -98371904 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 1021 1239 86 29 0 chr4 57258853 57259027 -98371093 + B2_Mm2 SINE B2 1 179 -16 5 1021 690 168 261 60 chr4 57259267 57259501 -98370619 + ORR1C2 LTR MaLR 104 384 0 5 1021 612 268 144 15 chr4 57259763 57259964 -98370156 + B4A SINE B4 2 228 -64 5 1021 222 37 0 0 chr4 57259972 57259999 -98370121 + (G)n Simple_repeat Simple_repeat 1 27 0 5 1021 1366 90 0 6 chr4 57260000 57260179 -98369941 + B2_Mm2 SINE B2 4 181 -14 5 1021 1198 131 11 0 chr4 57260236 57260412 -98369708 + B2_Mm1t SINE B2 2 179 -14 5 1021 352 145 310 52 chr4 57260497 57260613 -98369507 + B2_Mm1t SINE B2 48 193 0 5 1021 255 233 0 40 chr4 57260668 57260744 -98369376 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1021 352 203 0 0 chr4 57260998 57261062 -98369058 - ID_B1 SINE B4 -33 191 128 5 1021 330 239 0 14 chr4 57261063 57261135 -98368985 - ID4_ SINE ID -11 72 2 5 1021 267 204 637 8 chr4 57261278 57261411 -98368709 - B3 SINE B2 0 216 1 5 1021 217 295 98 65 chr4 57263441 57263655 -98366465 - L3 LINE CR1 -765 3724 3504 5 1021 1113 60 0 0 chr4 57264559 57264693 -98365427 + B1_Mus1 SINE Alu 2 135 -13 5 1021 234 0 0 0 chr4 57264714 57264740 -98365380 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1021 471 262 23 31 chr4 57265062 57265192 -98364928 - RSINE1 SINE B4 -36 129 1 5 1021 245 289 56 17 chr4 57265986 57266148 -98363972 + RMER15 LTR ERVL 324 520 -55 5 1021 244 85 0 60 chr4 57266492 57266542 -98363578 + (TTTCC)n Simple_repeat Simple_repeat 5 51 0 5 1021 549 72 0 0 chr4 57266543 57266626 -98363494 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1021 26 0 0 0 chr4 57267118 57267144 -98362976 + AT_rich Low_complexity Low_complexity 1 26 0 5 1021 441 0 0 0 chr4 57267167 57267216 -98362904 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1021 387 153 125 0 chr4 57267219 57267291 -98362829 - ID_B1 SINE B4 -8 216 136 5 1021 267 109 0 0 chr4 57268024 57268040 -98362080 + (A)n Simple_repeat Simple_repeat 1 16 0 5 1021 1158 68 0 0 chr4 57268040 57268187 -98361933 + B1_Mus2 SINE Alu 1 147 0 5 1021 267 109 0 0 chr4 57268187 57268216 -98361904 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1021 266 0 29 0 chr4 57268748 57268782 -98361338 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1021 1240 56 0 0 chr4 57268782 57268926 -98361194 - B1_Mus2 SINE Alu -2 145 2 5 1021 408 289 23 97 chr4 57270081 57270257 -98359863 + RSINE1 SINE B4 2 164 -1 5 1021 245 75 25 0 chr4 57270307 57270347 -98359773 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 5 1021 189 107 0 0 chr4 57271145 57271173 -98358947 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1021 1117 256 131 9 chr4 57272245 57272461 -98357659 + MTEa LTR MaLR 6 242 -137 5 1021 447 73 0 0 chr4 57272461 57272529 -98357591 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1021 1117 256 131 9 chr4 57272529 57272632 -98357488 + MTEa LTR MaLR 243 363 -16 5 1021 526 299 69 50 chr4 57273199 57273474 -98356646 + MTD LTR MaLR 1 272 -107 5 1021 573 226 8 39 chr4 57273821 57273950 -98356170 - PB1 SINE Alu -1 126 2 5 1021 207 200 0 0 chr4 57275226 57275271 -98354849 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1021 212 288 142 18 chr4 57275695 57275808 -98354312 - MIRc SINE MIR -14 254 128 6 1021 288 91 0 0 chr4 57276520 57276564 -98353556 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1021 834 263 121 4 chr4 57277251 57277507 -98352613 - B4A SINE B4 -5 287 2 6 1021 412 238 444 7 chr4 57278192 57278350 -98351770 + B4A SINE B4 1 229 -63 6 127 434 308 71 81 chr4 57278350 57278548 -98351572 + B3A SINE B2 1 196 -2 6 1022 750 216 7 0 chr4 57278555 57278694 -98351426 + B1_Mur1 SINE Alu 9 148 -1 6 1022 277 145 32 0 chr4 57278699 57278761 -98351359 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6 1022 861 127 0 0 chr4 57278899 57279056 -98351064 + (CA)n Simple_repeat Simple_repeat 2 158 0 6 1022 320 0 25 0 chr4 57280176 57280216 -98349904 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1022 944 237 65 23 chr4 57280243 57280506 -98349614 - B4A SINE B4 -15 277 4 6 1022 737 132 0 47 chr4 57280909 57281036 -98349084 + B1_Mur1 SINE Alu 9 129 -20 6 1022 312 91 0 0 chr4 57281038 57281082 -98349038 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 6 1022 289 250 162 0 chr4 57281465 57281533 -98348587 - RSINE1 SINE B4 -75 90 12 6 1022 180 219 0 0 chr4 57281831 57281872 -98348248 + GA-rich Low_complexity Low_complexity 2 42 0 6 1022 377 287 7 68 chr4 57281874 57281890 -98348230 + ID_B1 SINE B4 73 209 -15 6 1022 629 246 8 0 chr4 57281890 57282020 -98348100 + B1_Mur1 SINE Alu 4 134 -15 6 1022 301 296 12 0 chr4 57282143 57282224 -98347896 - ID_B1 SINE B4 -59 165 84 6 1022 1209 153 31 48 chr4 57283220 57283447 -98346673 + URR1B DNA MER1_type 3 225 0 6 1022 180 0 0 0 chr4 57283602 57283622 -98346498 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1022 1013 63 0 101 chr4 57283622 57283781 -98346339 - B1_Mm SINE Alu 0 147 5 6 1022 653 236 62 52 chr4 57283927 57284119 -98346001 + B3A SINE B2 5 198 0 6 1022 1241 103 0 37 chr4 57284281 57284472 -98345648 + B2_Mm2 SINE B2 1 184 -11 6 1022 354 308 100 26 chr4 57284472 57284728 -98345392 + L1M5 LINE L1 5554 5826 -414 6 1022 492 243 87 40 chr4 57284956 57285106 -98345014 - RSINE1 SINE B4 -8 157 1 6 1022 236 176 0 124 chr4 57285281 57285378 -98344742 + C-rich Low_complexity Low_complexity 2 86 0 6 1022 501 17 0 0 chr4 57285408 57285466 -98344654 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1022 212 367 114 40 chr4 57285466 57285693 -98344427 + L2b LINE L2 3131 3374 -1 6 1022 351 0 0 0 chr4 57286104 57286143 -98343977 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1022 181 410 24 0 chr4 57286853 57286936 -98343184 - L4 LINE RTE -386 1643 1559 6 1022 432 295 57 57 chr4 57287713 57287871 -98342249 + ID_B1 SINE B4 1 158 -66 6 1022 260 149 64 0 chr4 57287913 57287960 -98342160 - PB1D10 SINE Alu 0 117 68 6 1022 304 239 14 14 chr4 57287918 57287990 -98342130 - ID_B1 SINE B4 -5 219 148 6 1022 285 247 31 82 chr4 57288837 57288934 -98341186 + B4A SINE B4 2 93 -199 6 1022 1142 75 0 26 chr4 57288940 57289091 -98341029 + B1_Mm SINE Alu 1 147 0 6 1022 339 44 0 0 chr4 57289101 57289146 -98340974 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1022 294 270 16 0 chr4 57289284 57289347 -98340773 + PB1D9 SINE Alu 1 64 -56 6 1022 226 374 12 0 chr4 57289347 57289366 -98340754 + B4 SINE B4 86 168 -124 6 1022 1434 50 83 0 chr4 57290227 57290388 -98339732 + B2_Mm2 SINE B2 1 161 -34 6 1022 189 0 0 0 chr4 57290388 57290409 -98339711 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 1022 1434 50 83 0 chr4 57290409 57290427 -98339693 + B2_Mm2 SINE B2 162 193 -2 6 1022 234 262 16 32 chr4 57290787 57290850 -98339270 + B4A SINE B4 208 269 -23 6 1022 482 31 16 0 chr4 57290857 57290921 -98339199 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1022 846 119 31 16 chr4 57291122 57291250 -98338870 + B3 SINE B2 1 130 -86 6 1022 256 261 184 102 chr4 57292839 57293095 -98337025 + B4 SINE B4 2 278 -14 6 1022 1116 70 42 0 chr4 57294437 57294579 -98335541 + B1_Mus1 SINE Alu 1 148 0 6 1022 210 71 0 0 chr4 57294580 57294608 -98335512 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1022 237 265 18 97 chr4 57294841 57294954 -98335166 + MIR3 SINE MIR 62 165 -43 6 1022 23 78 0 0 chr4 57295930 57295981 -98334139 + AT_rich Low_complexity Low_complexity 1 51 0 6 1022 557 255 95 20 chr4 57297061 57297261 -98332859 - L1MB4 LINE L1 -48 6132 5918 6 1022 683 50 79 10 chr4 57297329 57297430 -98332690 + B1_Mus2 SINE Alu 40 147 0 6 1022 995 245 179 15 chr4 57297446 57297680 -98332440 - MTD LTR MaLR -28 391 102 6 1022 186 43 0 0 chr4 57297680 57297703 -98332417 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1022 995 245 179 15 chr4 57297703 57297804 -98332316 - MTD LTR MaLR -318 101 1 6 1022 901 160 0 14 chr4 57298041 57298187 -98331933 + B1_Mus2 SINE Alu 3 146 -1 6 1022 1145 154 19 47 chr4 57298272 57298483 -98331637 + MTC LTR MaLR 1 205 -216 6 1022 729 200 0 57 chr4 57298483 57298642 -98331478 + B1_Mur4 SINE Alu 1 150 0 6 1022 223 198 10 59 chr4 57298643 57298745 -98331375 + GA-rich Low_complexity Low_complexity 3 99 0 6 1022 497 104 333 17 chr4 57298750 57298867 -98331253 + MTC LTR MaLR 224 377 -44 6 1022 1154 52 0 0 chr4 57298917 57299053 -98331067 - B1_Mus2 SINE Alu -9 138 3 6 1022 590 309 109 54 chr4 57299053 57299335 -98330785 - L1MB4 LINE L1 -620 5558 5267 6 1022 366 233 229 42 chr4 57299335 57299501 -98330619 - B3A SINE B2 0 198 2 6 1022 590 313 62 71 chr4 57299501 57299792 -98330328 - L1MB4 LINE L1 -880 5266 4980 6 1022 283 322 184 20 chr4 57300399 57300649 -98329471 + L2a LINE L2 2948 3238 -188 6 1022 1217 62 0 7 chr4 57301129 57301276 -98328844 + B1_Mus2 SINE Alu 2 147 0 6 1022 495 261 0 26 chr4 57301456 57301570 -98328550 + ID_B1 SINE B4 106 216 -8 6 1022 239 224 61 0 chr4 57301526 57301575 -98328545 + PB1D7 SINE Alu 66 117 -3 6 1022 21 0 0 0 chr4 57301592 57301613 -98328507 + AT_rich Low_complexity Low_complexity 1 21 0 6 1022 487 295 49 21 chr4 57302164 57302306 -98327814 + B4 SINE B4 2 147 -145 6 1022 950 285 45 40 chr4 57302327 57302391 -98327729 - ORR1D1 LTR MaLR -12 362 296 6 1022 1077 104 14 0 chr4 57302391 57302535 -98327585 + B1_Mur4 SINE Alu 5 150 0 6 1022 950 285 45 40 chr4 57302535 57302824 -98327296 - ORR1D1 LTR MaLR -79 295 8 6 1022 251 217 100 78 chr4 57303393 57303483 -98326637 + MER5A DNA MER1_type 96 187 -2 6 1022 1236 35 0 7 chr4 57303539 57303684 -98326436 + B1_Mm SINE Alu 1 144 -3 6 1022 488 58 0 0 chr4 57303863 57303932 -98326188 + L1_Mus2 LINE L1 6497 6565 -1 6 1022 244 338 0 13 chr4 57304178 57304256 -98325864 - ID4_ SINE ID -2 81 5 6 1022 477 263 29 7 chr4 57304266 57304404 -98325716 - B1F SINE Alu -8 141 1 6 1022 621 116 5 101 chr4 57304410 57304533 -98325587 - B1_Mur4 SINE Alu -3 117 2 6 1022 1305 98 6 0 chr4 57304551 57304724 -98325396 - B2_Mm1a SINE B2 -18 175 2 6 1022 1198 28 35 0 chr4 57304751 57304892 -98325228 - B1_Mus2 SINE Alu 0 147 2 6 1022 237 258 165 8 chr4 57305044 57305165 -98324955 + B1F1 SINE Alu 1 140 -9 6 1022 197 0 71 0 chr4 57306111 57306139 -98323981 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1022 241 178 158 40 chr4 57306466 57306542 -98323578 - L2b LINE L2 -6 3369 3285 6 1022 380 262 76 19 chr4 57306817 57306922 -98323198 + ID_B1 SINE B4 2 112 -112 6 1022 414 0 0 0 chr4 57307052 57307098 -98323022 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1022 1708 21 5 0 chr4 57307226 57307418 -98322702 + B2_Mm1t SINE B2 1 193 0 6 1022 181 234 95 83 chr4 57308533 57308617 -98321503 + MIR SINE MIR 59 143 -65 6 1022 1206 268 91 3 chr4 57309407 57309747 -98320373 + MTE2b LTR MaLR 3 372 -7 6 1022 358 244 78 70 chr4 57311134 57311262 -98318858 + Tigger14a DNA MER2_type 166 294 -30 6 1022 320 309 108 8 chr4 57311384 57311610 -98318510 + MIRb SINE MIR 4 261 -1 6 1022 294 312 118 16 chr4 57311775 57311902 -98318218 + MER20 DNA MER1_type 46 185 -34 6 1022 688 257 27 19 chr4 57312283 57312508 -98317612 - MIRb SINE MIR -25 243 21 6 1022 39 80 0 0 chr4 57313257 57313345 -98316775 + GC_rich Low_complexity Low_complexity 1 88 0 6 1022 209 250 0 0 chr4 57313431 57313479 -98316641 - L2b LINE L2 -3 3372 3325 6 1022 221 0 35 0 chr4 57314248 57314277 -98315843 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1022 201 283 33 0 chr4 57314437 57314497 -98315623 + L2a LINE L2 3361 3422 -4 6 1022 239 312 0 15 chr4 57315158 57315223 -98314897 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 6 1022 318 99 0 82 chr4 57315474 57315555 -98314565 - B1_Mus2 SINE Alu 0 147 75 6 1022 378 268 68 51 chr4 57315654 57315772 -98314348 + RSINE1 SINE B4 16 135 -30 6 1022 243 88 0 0 chr4 57315772 57315806 -98314314 + (CATA)n Simple_repeat Simple_repeat 1 34 0 6 1022 937 166 28 0 chr4 57315931 57316076 -98314044 + B1_Mur3 SINE Alu 1 149 0 6 1022 279 0 0 0 chr4 57316185 57316216 -98313904 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1022 1343 176 11 8 chr4 57316229 57316492 -98313628 + RMER10B LTR ERVL 1 264 -134 6 1022 894 181 29 52 chr4 57316517 57316727 -98313393 + RMER10B LTR ERVL 194 398 0 6 1022 598 216 78 0 chr4 57316773 57316889 -98313231 - B1_Mus2 SINE Alu -22 125 1 6 1022 675 200 80 22 chr4 57316965 57317103 -98313017 + B1_Mur2 SINE Alu 3 148 -1 6 1022 843 176 227 0 chr4 57317105 57317281 -98312839 + B3 SINE B2 1 216 0 6 1022 513 163 0 0 chr4 57317600 57317692 -98312428 + (CA)n Simple_repeat Simple_repeat 2 93 0 7 1022 400 269 39 78 chr4 57319202 57319355 -98310765 - L2a LINE L2 -3 3423 3277 7 1022 1094 116 173 41 chr4 57319412 57319609 -98310511 + URR1A DNA MER1_type 1 223 -3 7 1022 477 280 106 82 chr4 57319609 57319656 -98310464 - CYRA11_Mm Unknown Y-chromosome -230 386 137 7 1022 424 250 12 200 chr4 57319621 57319716 -98310404 + ID_B1 SINE B4 67 149 -75 7 1022 516 315 7 27 chr4 57319716 57319866 -98310254 + B1_Mur1 SINE Alu 2 148 -1 7 1022 424 250 12 200 chr4 57319866 57319940 -98310180 + ID_B1 SINE B4 150 204 -20 7 1022 327 96 0 0 chr4 57322137 57322189 -98307931 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 7 1022 289 85 0 63 chr4 57322204 57322267 -98307853 - B2_Mm2 SINE B2 0 195 137 7 1022 801 105 9 17 chr4 57322350 57322466 -98307654 - B2_Mm1t SINE B2 -77 116 2 7 1022 945 150 0 0 chr4 57322487 57322627 -98307493 - B1_Mus1 SINE Alu -7 141 2 7 1022 442 269 50 42 chr4 57322641 57322761 -98307359 - B1F SINE Alu -20 129 9 7 1022 327 315 29 71 chr4 57322649 57322789 -98307331 - ID_B1 SINE B4 -25 199 66 7 1022 890 284 15 57 chr4 57323357 57323622 -98306498 + MTEa LTR MaLR 28 281 -98 7 1022 507 238 19 0 chr4 57323623 57323728 -98306392 + B3A SINE B2 1 107 -91 7 1022 350 334 201 42 chr4 57323847 57324250 -98305870 + LTR84b LTR ERVL 295 761 0 7 1022 306 0 0 0 chr4 57324473 57324507 -98305613 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1022 311 295 13 0 chr4 57324653 57324731 -98305389 - ID4_ SINE ID -1 82 4 7 1022 877 290 9 13 chr4 57324960 57325184 -98304936 - ID_B1 SINE B4 0 224 2 7 1022 189 0 0 0 chr4 57326118 57326139 -98303981 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1022 288 0 0 0 chr4 57326362 57326394 -98303726 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1022 195 42 0 0 chr4 57326570 57326594 -98303526 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 7 1022 471 71 71 0 chr4 57326594 57326668 -98303452 - L1Md_F2 LINE L1 -10 6572 6493 7 1022 219 396 28 0 chr4 57326725 57326831 -98303289 + L2b LINE L2 3265 3373 -2 7 1022 218 271 70 14 chr4 57326839 57326910 -98303210 - MER5A DNA MER1_type -34 155 81 7 1022 655 245 29 68 chr4 57327475 57327681 -98302439 - B3A SINE B2 0 198 1 7 1022 600 151 27 45 chr4 57327807 57327918 -98302202 - B1_Mur2 SINE Alu -2 147 39 7 1022 431 0 134 0 chr4 57327921 57328040 -98302080 + (CCTG)n Simple_repeat Simple_repeat 2 136 0 7 1022 213 114 22 22 chr4 57328044 57328089 -98302031 - B1F2 SINE Alu -91 58 14 7 1022 1167 111 179 0 chr4 57328249 57328439 -98301681 - URR1A DNA MER1_type -2 224 1 7 1022 207 260 30 144 chr4 57328605 57328807 -98301313 + L2a LINE L2 3204 3421 -5 7 1022 375 257 85 74 chr4 57330100 57330289 -98299831 - B2_Mm2 SINE B2 0 195 5 7 1022 1483 203 57 117 chr4 57330595 57330896 -98299224 - MTE2a LTR MaLR -1 378 89 7 1022 1084 117 0 7 chr4 57330896 57331042 -98299078 + B1_Mus1 SINE Alu 4 148 0 7 1022 1483 203 57 117 chr4 57331042 57331142 -98298978 - MTE2a LTR MaLR -291 88 1 7 1022 591 205 83 45 chr4 57331164 57331297 -98298823 + B1_Mur3 SINE Alu 10 147 -2 7 1022 412 350 236 31 chr4 57331368 57331785 -98298335 + LTR33 LTR ERVL 1 502 -13 7 1022 265 257 76 38 chr4 57331846 57331951 -98298169 - L2b LINE L2 -4 3371 3263 7 1022 367 232 14 0 chr4 57332470 57332539 -98297581 - ID4_ SINE ID -13 70 1 7 1022 339 308 0 9 chr4 57332553 57332658 -98297462 - PB1D10 SINE Alu -9 108 5 7 1022 814 58 99 0 chr4 57334555 57334676 -98295444 - BC1_Mm scRNA scRNA -16 136 4 7 1022 952 51 0 0 chr4 57334706 57334824 -98295296 + B1_Mus1 SINE Alu 30 147 -1 7 1022 544 219 48 16 chr4 57334866 57334888 -98295232 + B4 SINE B4 66 91 -201 7 1022 976 57 0 0 chr4 57334888 57335010 -98295110 + B1_Mus2 SINE Alu 1 122 -25 7 1022 387 0 0 0 chr4 57335214 57335257 -98294863 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1022 1130 43 0 0 chr4 57335549 57335688 -98294432 - B1_Mm SINE Alu 0 147 9 7 1022 468 221 88 99 chr4 57335552 57335733 -98294387 - B4A SINE B4 -68 224 46 7 1022 212 325 62 56 chr4 57335842 57336021 -98294099 + L2 LINE L2 2630 2809 -610 7 1022 516 282 37 52 chr4 57336887 57337078 -98293042 - B3A SINE B2 -8 190 3 7 1022 1267 41 0 0 chr4 57337325 57337471 -98292649 - B1_Mm SINE Alu 0 147 2 7 1022 733 279 55 38 chr4 57337638 57337830 -98292290 + B4A SINE B4 6 196 -96 7 1022 653 266 30 40 chr4 57337830 57338030 -98292090 + B3A SINE B2 1 198 0 7 1022 733 279 55 38 chr4 57338030 57338075 -98292045 + B4A SINE B4 197 246 -46 7 1022 438 20 0 0 chr4 57338109 57338160 -98291960 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1022 306 0 0 0 chr4 57338160 57338193 -98291927 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1022 704 285 131 80 chr4 57338231 57338301 -98291819 + L1MB3 LINE L1 5515 5595 -588 7 1022 974 140 14 0 chr4 57338301 57338444 -98291676 + B1_Mus2 SINE Alu 1 145 -2 7 1022 357 86 0 0 chr4 57338444 57338502 -98291618 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 7 1022 704 285 131 80 chr4 57338502 57338763 -98291357 + L1MB3 LINE L1 5596 5866 -317 7 1022 414 0 0 0 chr4 57338763 57338809 -98291311 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1022 704 285 131 80 chr4 57338809 57339101 -98291019 + L1MB3 LINE L1 5867 6170 -13 7 1022 738 109 109 0 chr4 57339207 57339326 -98290794 + B1_Mus2 SINE Alu 11 142 -5 7 1022 429 284 31 75 chr4 57339337 57339497 -98290623 + RSINE1 SINE B4 3 155 -10 7 1022 258 297 66 0 chr4 57339509 57339521 -98290599 + B4A SINE B4 71 88 -204 7 1022 456 243 45 0 chr4 57339521 57339620 -98290500 + PB1D10 SINE Alu 1 104 -13 7 1022 396 0 0 0 chr4 57339620 57339664 -98290456 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1022 456 243 45 0 chr4 57339664 57339675 -98290445 + PB1D10 SINE Alu 105 115 -2 7 1022 361 217 97 11 chr4 57339703 57339796 -98290324 + L1MB2 LINE L1 6013 6113 -58 7 1022 257 312 71 86 chr4 57339804 57339859 -98290261 + MT2B2 LTR ERVL 103 155 -429 7 1022 420 238 0 45 chr4 57339859 57339947 -98290173 + PB1D10 SINE Alu 2 85 -32 7 1022 280 209 89 106 chr4 57340107 57340230 -98289890 - MER5A DNA MER1_type -56 133 13 7 1022 603 142 0 0 chr4 57340510 57340616 -98289504 + (CA)n Simple_repeat Simple_repeat 2 107 0 7 1022 266 312 26 26 chr4 57340828 57340943 -98289177 + PB1D10 SINE Alu 3 117 0 7 1022 456 299 111 22 chr4 57341316 57341772 -98288348 - L1M5 LINE L1 -636 5537 5036 7 1022 564 274 26 36 chr4 57341787 57341980 -98288140 - B3A SINE B2 -5 193 3 7 1022 600 111 0 0 chr4 57342070 57342160 -98287960 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 7 1022 487 281 22 7 chr4 57342385 57342521 -98287599 - B1_Mur1 SINE Alu -7 142 5 7 1022 671 199 29 14 chr4 57342560 57342698 -98287422 - B1_Mur3 SINE Alu -5 144 5 7 1022 690 177 0 26 chr4 57342836 57342952 -98287168 - B3A SINE B2 -82 116 4 7 1022 1528 69 0 5 chr4 57343295 57343484 -98286636 + B2_Mm2 SINE B2 2 189 -6 7 1022 588 220 214 0 chr4 57343507 57343680 -98286440 + B3 SINE B2 1 210 -6 7 1022 504 248 161 8 chr4 57344110 57344240 -98285880 + RSINE1 SINE B4 2 151 -14 7 1022 297 0 0 0 chr4 57344240 57344273 -98285847 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1022 531 0 0 0 chr4 57344273 57344331 -98285789 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1022 461 289 12 37 chr4 57344596 57344758 -98285362 - MIR SINE MIR -29 233 76 7 1022 528 16 0 0 chr4 57345398 57345459 -98284661 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 7 1022 338 284 48 66 chr4 57345547 57345713 -98284407 + MIRb SINE MIR 55 217 -51 7 1022 546 277 23 0 chr4 57346025 57346155 -98283965 - MER2B DNA MER2_type 0 336 204 7 1022 948 220 36 25 chr4 57346757 57346953 -98283167 - B3A SINE B2 0 198 1 7 1022 188 402 0 12 chr4 57347477 57347560 -98282560 + L2 LINE L2 2807 2888 -531 7 1022 2029 133 108 26 chr4 57347710 57348088 -98282032 - MTC LTR MaLR -11 410 2 7 1022 1093 228 226 7 chr4 57348148 57348444 -98281676 + MTEa LTR MaLR 9 369 -10 7 1022 920 312 49 39 chr4 57348459 57348926 -98281194 - L1MB5 LINE L1 -105 6069 5598 7 1022 1234 115 16 16 chr4 57349004 57349190 -98280930 + B2_Mm2 SINE B2 3 188 -7 7 1022 264 276 0 103 chr4 57349248 57349345 -98280775 + L2c LINE L2 3297 3383 -4 7 1022 201 39 0 0 chr4 57349364 57349390 -98280730 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1022 569 250 63 14 chr4 57349406 57349548 -98280572 - B4 SINE B4 -51 241 93 7 1022 537 242 177 21 chr4 57349925 57350111 -98280009 + B3 SINE B2 1 215 -1 7 1022 1081 201 15 10 chr4 57350383 57350584 -98279536 + B3 SINE B2 2 203 -13 7 1022 729 169 0 0 chr4 57350584 57350720 -98279400 + (CATA)n Simple_repeat Simple_repeat 3 138 0 7 1022 236 261 138 0 chr4 57350788 57350853 -98279267 + ID4 SINE ID 2 75 -8 7 1022 442 344 25 13 chr4 57352284 57352443 -98277677 - MIRc SINE MIR -44 224 64 7 1022 543 233 23 70 chr4 57352560 57352661 -98277459 - B3 SINE B2 -9 207 112 7 1022 297 0 0 0 chr4 57352661 57352694 -98277426 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1022 543 233 23 70 chr4 57352694 57352721 -98277399 - B3 SINE B2 -105 111 85 7 1022 189 0 0 0 chr4 57352980 57353001 -98277119 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1022 182 250 96 0 chr4 57353029 57353081 -98277039 + MIR SINE MIR 58 114 -94 7 1022 666 161 0 72 chr4 57353235 57353429 -98276691 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 7 1022 441 136 53 26 chr4 57353439 57353552 -98276568 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 8 1022 283 302 21 10 chr4 57353657 57353754 -98276366 + CT-rich Low_complexity Low_complexity 2 99 0 8 1022 700 237 7 15 chr4 57354093 57354230 -98275890 - B1_Mus2 SINE Alu -1 146 11 8 1022 964 255 52 102 chr4 57354291 57354653 -98275467 - MTEa LTR MaLR -1 378 35 8 1022 1306 96 31 26 chr4 57354669 57354861 -98275259 - B2_Mm2 SINE B2 0 195 3 8 1022 27 29 0 0 chr4 57354895 57354929 -98275191 + AT_rich Low_complexity Low_complexity 1 34 0 8 1022 583 302 22 39 chr4 57354934 57355113 -98275007 + B3 SINE B2 3 178 -38 8 1022 285 248 67 48 chr4 57355275 57355399 -98274721 - L1M3 LINE L1 -3370 2776 2651 8 1022 489 97 0 0 chr4 57355533 57355605 -98274515 + (TCCC)n Simple_repeat Simple_repeat 3 74 0 8 1022 405 0 0 0 chr4 57355605 57355650 -98274470 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1022 830 163 0 36 chr4 57355650 57355790 -98274330 - B1_Mus1 SINE Alu -9 139 5 8 1022 694 279 0 5 chr4 57355842 57356026 -98274094 - B3A SINE B2 -13 185 3 8 1022 608 202 25 0 chr4 57356074 57356193 -98273927 - B1_Mus2 SINE Alu -23 124 3 8 1022 660 276 65 0 chr4 57356193 57356277 -98273843 - B4 SINE B4 -196 96 1 8 1022 230 252 190 15 chr4 57356286 57356423 -98273697 - L1MEf LINE L1 -3542 2604 2444 8 1022 195 129 0 0 chr4 57356491 57356522 -98273598 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1022 213 293 11 89 chr4 57356534 57356570 -98273550 - RSINE1 SINE B4 0 165 133 8 1022 1991 141 189 3 chr4 57356570 57356925 -98273195 - MTC LTR MaLR 0 421 1 8 1022 462 272 99 102 chr4 57356925 57357159 -98272961 - B4 SINE B4 -17 275 38 8 1022 779 218 151 151 chr4 57357159 57357247 -98272873 + ORR1E LTR MaLR 1 105 -254 8 1022 1078 48 7 52 chr4 57357247 57357400 -98272720 + B1_Mus2 SINE Alu 2 147 0 8 1022 779 218 151 151 chr4 57357400 57357531 -98272589 + ORR1E LTR MaLR 106 215 -144 8 1022 824 197 90 35 chr4 57357531 57357731 -98272389 + B3 SINE B2 5 215 -1 8 1022 779 218 151 151 chr4 57357731 57357785 -98272335 + ORR1E LTR MaLR 216 255 -104 8 1022 405 0 0 0 chr4 57357785 57357830 -98272290 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1022 779 218 151 151 chr4 57357830 57357911 -98272209 + ORR1E LTR MaLR 256 356 -3 8 1022 462 271 102 102 chr4 57357911 57357957 -98272163 - B4 SINE B4 -255 37 1 8 1022 237 158 0 0 chr4 57357957 57357995 -98272125 - L1MEf LINE L1 -3995 2247 2210 8 1022 299 85 21 0 chr4 57358008 57358055 -98272065 + (CAA)n Simple_repeat Simple_repeat 3 50 0 8 1022 282 290 127 56 chr4 57358196 57358463 -98271657 - B4 SINE B4 -2 290 5 8 1022 265 214 61 10 chr4 57358468 57358567 -98271553 - L1MEf LINE L1 -3989 2177 2074 8 1022 264 335 0 12 chr4 57358678 57358772 -98271348 - BC1_Mm scRNA scRNA -59 93 1 8 1022 356 300 81 6 chr4 57358783 57358944 -98271176 - L1MEf LINE L1 -4320 1922 1750 8 1022 401 328 77 33 chr4 57359219 57359402 -98270718 + MIRb SINE MIR 70 260 -8 8 1022 210 369 81 25 chr4 57359700 57359861 -98270259 + MER5A DNA MER1_type 17 186 -3 8 1022 504 221 71 64 chr4 57360042 57360182 -98269938 - B4A SINE B4 -7 285 145 8 1022 229 287 89 8 chr4 57360179 57360302 -98269818 + RMER12 LTR ERVK 723 855 -467 8 1022 949 256 110 19 chr4 57360320 57360583 -98269537 - B4 SINE B4 -3 289 3 8 1022 1494 60 3 6 chr4 57360842 57361194 -98268926 + (TTC)n Simple_repeat Simple_repeat 1 350 0 8 1022 254 193 0 162 chr4 57361221 57361289 -98268831 - B1F SINE Alu -19 130 74 8 1022 648 194 20 20 chr4 57361260 57361411 -98268709 - B1_Mur2 SINE Alu -18 131 10 8 1022 1090 190 56 0 chr4 57361445 57361640 -98268480 - B3 SINE B2 -10 206 1 8 1022 2331 114 3 3 chr4 57361649 57361975 -98268145 + ORR1A3 LTR MaLR 1 326 0 8 1022 10800 132 64 15 chr4 57361975 57363847 -98266273 + ORR1A3-int LTR MaLR 1 1963 0 8 1022 2116 132 3 0 chr4 57363847 57364164 -98265956 + ORR1A3 LTR MaLR 1 318 -8 8 1022 795 248 65 15 chr4 57364196 57364397 -98265723 - B3 SINE B2 -5 211 1 8 1022 911 69 0 0 chr4 57364462 57364578 -98265542 + B2_Mm2 SINE B2 1 116 -79 8 1022 341 93 19 0 chr4 57364592 57364646 -98265474 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1022 857 246 5 29 chr4 57364688 57364897 -98265223 - B3 SINE B2 -11 205 2 8 1022 681 162 45 0 chr4 57364906 57365060 -98265060 + T-rich Low_complexity Low_complexity 3 163 0 8 1022 778 69 0 0 chr4 57365060 57365161 -98264959 - B1_Mus2 SINE Alu 0 147 47 8 1022 281 225 68 40 chr4 57365103 57365177 -98264943 - RLTR25B LTR ERVK -519 509 434 8 1022 3454 38 2 0 chr4 57365379 57365774 -98264346 - MTA_Mm LTR MaLR 0 396 1 8 1022 383 164 0 0 chr4 57366489 57366544 -98263576 - B1_Mus2 SINE Alu -91 56 2 8 1022 324 0 0 0 chr4 57366677 57366713 -98263407 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 1022 287 212 12 0 chr4 57366992 57367072 -98263048 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 8 1022 737 200 57 0 chr4 57367506 57367646 -98262474 + B1_Mur4 SINE Alu 3 150 0 8 1022 210 37 0 0 chr4 57367674 57367701 -98262419 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1022 880 154 0 59 chr4 57367729 57367881 -98262239 + RLTR14-int LTR ERV1 3887 4029 -1288 8 1022 191 270 15 73 chr4 57367881 57367949 -98262171 + L3 LINE CR1 895 958 -3531 8 1022 1141 135 283 58 chr4 57367949 57368233 -98261887 + RLTR14-int LTR ERV1 4104 4451 -866 8 1022 1694 138 72 50 chr4 57368218 57368512 -98261608 + RLTR14-int LTR ERV1 4736 5034 -283 8 1022 441 0 0 0 chr4 57368512 57368561 -98261559 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 8 1022 1694 138 72 50 chr4 57368561 57368586 -98261534 + RLTR14-int LTR ERV1 5035 5062 -255 8 1022 183 274 50 59 chr4 57368592 57368693 -98261427 - L3 LINE CR1 -1644 2845 2746 8 1022 1852 121 59 28 chr4 57368791 57369113 -98261007 + RLTR14 LTR ERV1 7 338 -44 8 1022 451 296 108 21 chr4 57369161 57369447 -98260673 + L1MA9 LINE L1 5997 6307 -5 8 1022 186 128 0 0 chr4 57369849 57369888 -98260232 + (G)n Simple_repeat Simple_repeat 1 39 0 8 1022 311 276 154 15 chr4 57370253 57370389 -98259731 + L2a LINE L2 3102 3256 -170 8 1022 745 299 102 32 chr4 57370781 57371244 -98258876 + RMER5 LTR ERV1 33 527 -7 8 1022 735 238 21 11 chr4 57371841 57372028 -98258092 + Lx6 LINE L1 7099 7287 -173 8 1022 957 244 80 138 chr4 57372149 57372539 -98257581 - LTR68 LTR ERV1 -161 579 213 8 1022 225 0 0 0 chr4 57373133 57373158 -98256962 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1022 279 79 0 0 chr4 57374628 57374666 -98255454 + (C)n Simple_repeat Simple_repeat 1 38 0 8 1022 251 276 33 44 chr4 57375134 57375225 -98254895 - L4 LINE RTE -1235 794 705 8 1022 398 266 141 16 chr4 57375393 57375584 -98254536 - B3 SINE B2 -1 215 1 8 1022 365 251 256 171 chr4 57375979 57376248 -98253872 + B4 SINE B4 1 292 0 8 1022 294 340 24 67 chr4 57376513 57376677 -98253443 - MIRb SINE MIR -67 201 45 8 1022 208 0 62 0 chr4 57377506 57377538 -98252582 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1022 1283 83 0 11 chr4 57378140 57378506 -98251614 + (TG)n Simple_repeat Simple_repeat 1 361 0 8 1022 497 252 31 63 chr4 57378506 57378633 -98251487 - RSINE1 SINE B4 -41 124 2 8 1022 255 263 78 146 chr4 57378633 57378816 -98251304 + MTEa LTR MaLR 205 373 -6 8 1022 492 242 41 82 chr4 57378851 57379071 -98251049 + L1M5 LINE L1 2760 2970 -3176 8 1022 264 353 68 8 chr4 57379099 57379216 -98250904 - ORR1E LTR MaLR -222 137 14 8 1022 304 304 53 21 chr4 57379225 57379319 -98250801 - L1M5 LINE L1 -3430 2716 2620 8 1022 312 308 22 0 chr4 57379456 57379547 -98250573 - PB1D10 SINE Alu -6 111 19 8 1022 22 0 0 0 chr4 57379671 57379693 -98250427 + AT_rich Low_complexity Low_complexity 1 22 0 8 1022 1475 48 0 31 chr4 57379740 57379783 -98250337 - B2_Mm2 SINE B2 -3 192 153 8 1022 2919 52 0 0 chr4 57379783 57380129 -98249991 - ORR1A1 LTR MaLR 0 346 1 8 1022 13848 55 14 5 chr4 57380129 57381905 -98248215 - ORR1A1-int LTR MaLR 0 1792 1 8 1022 2899 52 3 0 chr4 57381905 57382250 -98247870 - ORR1A1 LTR MaLR 0 346 1 8 1022 1475 48 0 31 chr4 57382250 57382399 -98247721 - B2_Mm2 SINE B2 -43 152 6 8 1022 202 188 0 0 chr4 57383300 57383332 -98246788 + (ATGGTG)n Simple_repeat Simple_repeat 1 32 0 8 1022 249 33 0 0 chr4 57383614 57383644 -98246476 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1022 203 0 37 0 chr4 57384938 57384965 -98245155 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1022 874 172 14 0 chr4 57384966 57385111 -98245009 - B1_Mus2 SINE Alu 0 147 1 8 1022 991 230 9 29 chr4 57385147 57385357 -98244763 - B3 SINE B2 0 216 11 8 1022 261 253 182 40 chr4 57385364 57385463 -98244657 - B3A SINE B2 -84 114 2 8 1022 569 232 35 123 chr4 57385486 57385746 -98244374 - L1MB7 LINE L1 -32 6152 5916 8 1022 221 258 0 16 chr4 57386188 57386251 -98243869 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1022 576 290 119 115 chr4 57386262 57386452 -98243668 - B4 SINE B4 -19 273 69 8 1022 1485 69 16 0 chr4 57386452 57386640 -98243480 + B2_Mm2 SINE B2 3 193 -2 8 1022 576 290 119 115 chr4 57386640 57386718 -98243402 - B4 SINE B4 -224 68 4 8 1022 649 221 19 39 chr4 57387381 57387536 -98242584 + B3 SINE B2 1 152 -64 8 1022 1320 75 17 0 chr4 57387547 57387721 -98242399 + B2_Mm1t SINE B2 3 179 -14 8 1022 529 250 86 43 chr4 57387749 57387912 -98242208 + B3 SINE B2 47 216 0 8 1022 805 284 12 37 chr4 57388449 57388694 -98241426 - MLT1A0 LTR MaLR -126 239 1 8 1022 308 381 10 30 chr4 57388694 57388894 -98241226 + Charlie1a DNA MER1_type 89 284 -1171 8 1022 591 265 8 0 chr4 57388902 57389034 -98241086 + B3A SINE B2 7 139 -59 8 1022 270 0 0 0 chr4 57389037 57389067 -98241053 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1022 1039 289 19 30 chr4 57389086 57389450 -98240670 + Charlie1a DNA MER1_type 464 823 -632 8 1022 388 214 20 39 chr4 57389597 57389699 -98240421 + MTD LTR MaLR 13 112 -307 8 1022 530 154 57 9 chr4 57389728 57389833 -98240287 - B1_Mur2 SINE Alu -6 143 34 8 1022 1000 227 110 0 chr4 57389836 57390100 -98240020 + MTD LTR MaLR 99 391 -28 8 1022 443 131 11 21 chr4 57390092 57390186 -98239934 + ORR1A1 LTR MaLR 6 98 -248 8 1022 192 302 58 9 chr4 57390400 57390489 -98239631 - MIRc SINE MIR -105 171 82 8 1022 384 22 0 0 chr4 57390558 57390603 -98239517 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1022 344 383 56 38 chr4 57391341 57391629 -98238491 - LTR16A LTR ERVL -2 449 157 8 1022 296 48 0 23 chr4 57391641 57391684 -98238436 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 8 1022 307 89 18 18 chr4 57391795 57391852 -98238268 + (AGGGGG)n Simple_repeat Simple_repeat 5 61 0 8 1022 445 255 9 9 chr4 57392033 57392144 -98237976 - PB1D10 SINE Alu -6 111 1 9 1022 554 234 40 0 chr4 57392361 57392485 -98237635 - RSINE1 SINE B4 -35 130 2 9 1022 853 275 133 11 chr4 57392684 57393066 -98237054 + MLT1C LTR MaLR 4 432 -35 9 1022 208 320 20 20 chr4 57395440 57395542 -98234578 - MIRc SINE MIR -6 262 161 9 1022 728 156 278 39 chr4 57395727 57395907 -98234213 - URR1B DNA MER1_type -2 223 1 9 1022 782 250 22 6 chr4 57396036 57396217 -98233903 - B3 SINE B2 -27 189 6 9 1022 320 279 0 0 chr4 57396349 57396428 -98233692 + CT-rich Low_complexity Low_complexity 3 81 0 9 1022 313 103 327 36 chr4 57396913 57397023 -98233097 - B2_Mm2 SINE B2 -7 188 47 9 1022 1279 102 11 0 chr4 57397070 57397246 -98232874 - B2_Mm1t SINE B2 -14 179 2 9 1022 662 233 13 57 chr4 57397329 57397488 -98232632 + B3 SINE B2 45 196 -20 9 1022 215 31 31 0 chr4 57397493 57397525 -98232595 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1022 698 175 6 17 chr4 57397729 57397909 -98232211 + G-rich Low_complexity Low_complexity 2 179 0 9 1022 345 155 17 0 chr4 57397969 57398027 -98232093 + B3A SINE B2 9 67 -131 9 1022 564 264 11 82 chr4 57398220 57398402 -98231718 + B4A SINE B4 6 174 -118 9 1022 277 210 0 174 chr4 57398314 57398412 -98231708 + B1F2 SINE Alu 15 95 -54 9 1022 1922 48 0 0 chr4 57398857 57399087 -98231033 + L1_Mus1 LINE L1 6338 6567 0 9 1022 651 247 20 0 chr4 57400067 57400213 -98229907 + B1F2 SINE Alu 1 149 0 9 1022 274 241 25 92 chr4 57400641 57400760 -98229360 + LTR82A LTR ERVL 1 111 -761 9 1022 254 318 0 0 chr4 57400845 57400911 -98229209 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 9 1022 294 258 22 33 chr4 57401010 57401102 -98229018 + ORR1E LTR MaLR 3 93 -266 9 1022 748 111 16 0 chr4 57401143 57401269 -98228851 + URR1B DNA MER1_type 96 223 -2 9 1022 281 261 36 119 chr4 57401354 57401550 -98228570 + ORR1E LTR MaLR 193 375 -4 9 1022 2130 129 70 9 chr4 57401601 57401946 -98228174 - ORR1B2 LTR MaLR 0 367 2 9 1022 253 343 66 62 chr4 57402025 57402283 -98227837 + LTR82A LTR ERVL 490 748 -124 9 1022 645 202 16 0 chr4 57402279 57402403 -98227717 + B3 SINE B2 5 130 -86 9 1022 414 0 0 0 chr4 57402435 57402481 -98227639 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1022 411 73 0 0 chr4 57402489 57402544 -98227576 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 9 1022 464 333 112 20 chr4 57403075 57403525 -98226595 - MT2A LTR ERVL 0 554 2 9 1022 334 260 0 0 chr4 57404413 57404486 -98225634 - ID4 SINE ID -9 74 2 9 1022 361 278 104 31 chr4 57405310 57405503 -98224617 - MLT1C LTR MaLR -202 265 59 9 1022 263 280 144 16 chr4 57406017 57406153 -98223967 - MER106A DNA MER1_type -8 228 99 9 1022 856 217 98 109 chr4 57406307 57406748 -98223372 + MT2A LTR ERVL 1 574 -27 9 1022 1373 194 91 21 chr4 57406877 57407208 -98222912 + ORR1C1 LTR MaLR 25 378 0 9 1022 484 317 121 29 chr4 57407226 57407541 -98222579 + ORR1E LTR MaLR 3 346 -13 9 1022 1375 115 254 7 chr4 57407621 57407909 -98222211 - ORR1B2 LTR MaLR -8 359 1 9 1022 552 181 83 48 chr4 57408112 57408257 -98221863 - B1_Mur4 SINE Alu 0 150 1 9 1022 264 303 22 11 chr4 57408450 57408540 -98221580 - B3 SINE B2 -8 208 118 9 1022 309 51 0 0 chr4 57408622 57408661 -98221459 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1022 856 285 129 0 chr4 57408682 57408938 -98221182 - B4A SINE B4 0 292 4 9 1022 39 22 0 0 chr4 57409058 57409104 -98221016 + AT_rich Low_complexity Low_complexity 1 46 0 9 1022 709 226 34 14 chr4 57409106 57409254 -98220866 - RSINE1 SINE B4 -10 155 5 9 1023 927 272 95 27 chr4 57410167 57410503 -98219617 + MTEa LTR MaLR 4 362 -17 9 1023 23 54 0 0 chr4 57410715 57410752 -98219368 + AT_rich Low_complexity Low_complexity 1 37 0 9 1023 401 267 31 106 chr4 57411577 57411740 -98218380 - B3A SINE B2 0 216 67 9 1023 1805 254 69 20 chr4 57412211 57412716 -98217404 - MT2A LTR ERVL 0 533 4 9 1023 375 152 0 0 chr4 57413185 57413264 -98216856 + CT-rich Low_complexity Low_complexity 2 80 0 9 1023 492 222 194 0 chr4 57413265 57413373 -98216747 - B1_Mur1 SINE Alu -18 131 3 9 1023 22 0 0 0 chr4 57413380 57413402 -98216718 + AT_rich Low_complexity Low_complexity 1 22 0 9 1023 451 308 124 32 chr4 57413602 57413941 -98216179 + L1M2 LINE L1 5383 5752 -548 9 1023 319 186 17 17 chr4 57413929 57413989 -98216131 + L1M2 LINE L1 5692 5751 -540 9 1023 304 228 0 0 chr4 57413975 57414032 -98216088 + L1M2 LINE L1 5688 5744 -553 9 1023 292 241 12 24 chr4 57414027 57414112 -98216008 + L1M2 LINE L1 5692 5775 -525 9 1023 7306 156 48 19 chr4 57414160 57416582 -98213538 - Lx5 LINE L1 -3 7047 4559 9 1023 931 103 0 0 chr4 57416583 57416729 -98213391 - Lx5 LINE L1 -2607 3270 3125 9 1023 339 140 316 9 chr4 57416729 57416843 -98213277 - B2_Mm2 SINE B2 0 195 47 9 1023 1260 97 11 6 chr4 57416891 57417067 -98213053 - B2_Mm1t SINE B2 -14 179 3 9 1023 9777 158 38 29 chr4 57417067 57419327 -98210793 - Lx5 LINE L1 -2738 3139 862 9 1023 308 238 62 0 chr4 57419695 57419775 -98210345 + B3 SINE B2 127 211 -5 9 1023 220 26 24 71 chr4 57419791 57419833 -98210287 + (TTCTCC)n Simple_repeat Simple_repeat 4 43 0 9 1023 4293 67 14 11 chr4 57420097 57420652 -98209468 + L1_Mus1 LINE L1 6010 6566 -1 9 1023 771 146 0 0 chr4 57420744 57420874 -98209246 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 9 1023 2583 138 99 51 chr4 57421021 57421555 -98208565 - RMER4B LTR ERVK -8 577 18 9 1023 477 321 83 31 chr4 57421673 57421901 -98208219 + MER77 LTR ERVL 197 436 -171 9 1023 2190 101 79 6 chr4 57422011 57422341 -98207779 - IAPEY2_LTR LTR ERVK -3 354 1 9 1023 180 0 0 0 chr4 57422927 57422947 -98207173 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1023 615 62 0 0 chr4 57422998 57423078 -98207042 + (TC)n Simple_repeat Simple_repeat 2 81 0 9 1023 311 0 26 0 chr4 57423545 57423584 -98206536 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 1023 270 0 0 0 chr4 57423584 57423613 -98206507 + (TA)n Simple_repeat Simple_repeat 1 30 0 9 1023 681 240 7 14 chr4 57423671 57423819 -98206301 - B1_Mus2 SINE Alu 0 147 1 9 1023 324 280 16 41 chr4 57423844 57423967 -98206153 + RSINE1 SINE B4 38 157 -8 9 1023 1436 209 3 3 chr4 57423996 57424313 -98205807 - RCHARR1 DNA MER1_type -143 831 515 9 1023 614 214 0 4 chr4 57424313 57424551 -98205569 + (TG)n Simple_repeat Simple_repeat 1 236 0 9 1023 286 312 0 0 chr4 57424570 57424647 -98205473 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1023 575 267 152 23 chr4 57424648 57424905 -98205215 - B4 SINE B4 0 292 3 9 1023 572 184 36 7 chr4 57424933 57425070 -98205050 - RCHARR1 DNA MER1_type -457 517 377 9 1023 567 0 0 0 chr4 57425077 57425140 -98204980 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 9 1023 802 261 126 35 chr4 57427144 57427487 -98202633 - RCHARR1 DNA MER1_type -600 374 1 9 1023 390 271 104 0 chr4 57427491 57427587 -98202533 + B3A SINE B2 1 106 -92 9 1023 363 44 0 0 chr4 57427684 57427729 -98202391 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1023 252 221 44 0 chr4 57428071 57428139 -98201981 + CT-rich Low_complexity Low_complexity 2 72 0 9 1023 774 221 0 0 chr4 57428144 57428284 -98201836 - B1_Mur1 SINE Alu -9 140 1 9 1023 1387 108 0 5 chr4 57428461 57428656 -98201464 + B2_Mm2 SINE B2 2 195 0 9 1023 874 205 75 0 chr4 57428983 57429183 -98200937 - B3 SINE B2 -1 215 1 9 1023 410 228 54 54 chr4 57429246 57429376 -98200744 - MTEb LTR MaLR 0 379 250 9 1023 951 290 41 14 chr4 57429591 57429881 -98200239 - MTE2b LTR MaLR -77 302 5 9 1023 1225 96 96 0 chr4 57429916 57430094 -98200026 + B2_Mm2 SINE B2 1 195 0 9 1023 369 296 0 0 chr4 57430561 57430642 -98199478 - ID4 SINE ID -2 81 1 9 1023 275 261 46 0 chr4 57430673 57430738 -98199382 + B1F1 SINE Alu 27 94 -55 9 1023 354 61 68 48 chr4 57430932 57431035 -98199085 + A-rich Low_complexity Low_complexity 4 108 0 9 1023 666 198 0 0 chr4 57431887 57432003 -98198117 + PB1D10 SINE Alu 1 116 -1 9 1023 392 323 81 0 chr4 57432384 57432545 -98197575 - L1MC4 LINE L1 -530 7512 7339 9 1023 247 286 103 17 chr4 57432659 57432833 -98197287 - L1MC4 LINE L1 -984 7058 6870 9 1023 684 278 53 39 chr4 57432861 57433067 -98197053 + MTD LTR MaLR 1 209 -210 9 1023 4333 233 68 21 chr4 57433110 57434395 -98195725 + RMER1A Other Other 2 1024 -6 9 1023 644 201 144 0 chr4 57434413 57434587 -98195533 + MTD LTR MaLR 221 419 0 9 1023 566 312 120 6 chr4 57434590 57434906 -98195214 - L1MC4 LINE L1 -1231 6811 6460 9 1023 1867 137 101 118 chr4 57435149 57435364 -98194756 + ORR1B1 LTR MaLR 1 211 -183 9 1023 1098 82 0 39 chr4 57435364 57435517 -98194603 - B1_Mm SINE Alu 0 147 1 9 1023 1867 137 101 118 chr4 57435517 57435698 -98194422 + ORR1B1 LTR MaLR 212 390 -4 9 1023 424 299 42 49 chr4 57435709 57435853 -98194267 + ID_B1 SINE B4 82 224 0 9 1023 793 220 12 6 chr4 57435858 57436018 -98194102 + ID_B1 SINE B4 3 163 -61 9 1023 1017 267 24 44 chr4 57437395 57437693 -98192427 - B4A SINE B4 0 292 1 9 1023 312 294 62 27 chr4 57438056 57438168 -98191952 + RSINE1 SINE B4 12 127 -38 9 1023 368 143 14 0 chr4 57438255 57438325 -98191795 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 9 1023 450 0 0 0 chr4 57439276 57439326 -98190794 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1023 374 0 0 21 chr4 57439867 57439914 -98190206 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1023 1109 162 5 19 chr4 57439998 57440206 -98189914 - RMER10B LTR ERVL 0 398 194 9 1023 1394 136 0 26 chr4 57440231 57440503 -98189617 - RMER10B LTR ERVL -133 265 1 9 1023 194 325 102 34 chr4 57440587 57440705 -98189415 - L2a LINE L2 -1 3425 3300 9 1023 268 24 24 24 chr4 57440805 57440847 -98189273 + (TGGGGG)n Simple_repeat Simple_repeat 5 46 0 9 1023 1377 74 11 0 chr4 57442332 57442507 -98187613 + B2_Mm1t SINE B2 3 179 -14 9 1023 343 115 11 34 chr4 57442539 57442609 -98187511 + B2_Mm2 SINE B2 47 118 -98 1 1023 2113 126 12 3 chr4 57443721 57444056 -98186064 - ORR1A1 LTR MaLR -8 338 1 1 1023 182 128 26 0 chr4 57444642 57444681 -98185439 + CT-rich Low_complexity Low_complexity 2 41 0 1 1023 1311 74 0 0 chr4 57444686 57444862 -98185258 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 1 1023 945 273 31 16 chr4 57444937 57445194 -98184926 - Lx5 LINE L1 -35 7015 6755 1 1023 392 293 7 73 chr4 57445209 57445360 -98184760 + B4A SINE B4 93 233 -59 1 1023 790 103 0 117 chr4 57445952 57446106 -98184014 + B1_Mur3 SINE Alu 9 144 -6 1 1023 201 161 0 0 chr4 57446126 57446157 -98183963 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1023 570 223 93 13 chr4 57446163 57446313 -98183807 - RSINE1 SINE B4 0 165 4 1 1023 209 284 168 14 chr4 57448650 57448793 -98181327 + MIR SINE MIR 12 176 -86 1 1023 224 239 0 0 chr4 57448824 57448870 -98181250 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1 1023 26 0 0 0 chr4 57449028 57449054 -98181066 + AT_rich Low_complexity Low_complexity 1 26 0 1 1023 197 33 33 0 chr4 57449054 57449084 -98181036 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1023 396 281 113 9 chr4 57449098 57449213 -98180907 - RSINE1 SINE B4 -35 130 4 1 1023 395 279 70 48 chr4 57450141 57450412 -98179708 - L2b LINE L2 -166 3209 2933 1 1023 411 250 24 0 chr4 57450415 57450539 -98179581 + (TG)n Simple_repeat Simple_repeat 1 127 0 1 1023 749 260 139 29 chr4 57450566 57450875 -98179245 - ORR1E LTR MaLR -10 349 7 1 1023 302 360 38 32 chr4 57451765 57451923 -98178197 - ID_B1 SINE B4 -11 213 55 1 1023 237 237 85 0 chr4 57452243 57452302 -98177818 + tRNA-Ala-GCY_ tRNA tRNA 11 74 -1 1 1023 858 235 107 0 chr4 57453012 57453208 -98176912 + ID_B1 SINE B4 2 218 -6 1 1023 348 256 67 104 chr4 57453220 57453490 -98176630 - HAL1b LINE L1 -864 1145 886 1 1023 509 292 22 0 chr4 57453507 57453644 -98176476 - B1F1 SINE Alu 0 149 10 1 1023 1835 143 56 20 chr4 57453809 57454368 -98175752 + RMER6C LTR ERVK 1 690 0 1 1023 2193 141 37 0 chr4 57454344 57454719 -98175401 + ORR1B1 LTR MaLR 3 391 -3 1 1023 353 328 53 46 chr4 57454999 57455280 -98174840 - B4A SINE B4 -8 284 2 1 1023 228 67 0 0 chr4 57455608 57455638 -98174482 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1023 706 273 4 58 chr4 57455759 57456000 -98174120 - MTEa LTR MaLR 0 379 152 1 1023 1899 131 70 29 chr4 57456004 57456349 -98173771 - ORR1B2 LTR MaLR -8 359 1 1 1023 679 254 6 29 chr4 57456349 57456504 -98173616 - MTEa LTR MaLR -228 151 1 1 1023 279 366 9 35 chr4 57458109 57458225 -98171895 - PB1D10 SINE Alu -2 115 3 1 1023 360 0 0 0 chr4 57459053 57459093 -98171027 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1023 580 294 68 30 chr4 57459113 57459376 -98170744 - B4 SINE B4 -18 274 2 1 1023 1479 74 11 5 chr4 57459848 57460038 -98170082 + B2_Mm2 SINE B2 2 192 -3 1 1023 265 286 0 0 chr4 57460118 57460188 -98169932 - ID4_ SINE ID -9 74 5 1 1023 219 271 0 54 chr4 57460796 57460870 -98169250 + (TATG)n Simple_repeat Simple_repeat 1 70 0 1 1023 1086 244 46 4 chr4 57460870 57461150 -98168970 - B4A SINE B4 0 292 1 1 1023 2416 31 3 6 chr4 57461704 57462023 -98168097 + RLTR10 LTR ERVK 1 318 -72 1 1023 265 167 0 0 chr4 57462076 57462136 -98167984 + RLTR10 LTR ERVK 259 318 -72 1 1023 254 183 0 0 chr4 57462142 57462202 -98167918 + RLTR10 LTR ERVK 259 318 -72 1 1023 867 62 15 15 chr4 57462208 57462338 -98167782 + RLTR10 LTR ERVK 259 388 -2 1 1023 3134 45 3 0 chr4 57462370 57462745 -98167375 + RLTR10-int LTR ERVK 11 386 -1601 1 1023 8467 16 0 3 chr4 57462743 57463682 -98166438 + RLTR10-int LTR ERVK 1049 1984 -3 1 1023 2416 31 3 6 chr4 57463684 57464003 -98166117 + RLTR10 LTR ERVK 1 318 -72 1 1023 250 161 0 0 chr4 57464009 57464065 -98166055 + RLTR10 LTR ERVK 259 314 -76 1 1023 265 167 0 0 chr4 57464073 57464133 -98165987 + RLTR10 LTR ERVK 259 318 -72 1 1023 254 183 0 0 chr4 57464139 57464199 -98165921 + RLTR10 LTR ERVK 259 318 -72 1 1023 884 62 15 15 chr4 57464205 57464337 -98165783 + RLTR10 LTR ERVK 259 390 0 1 1023 336 48 0 0 chr4 57464623 57464665 -98165455 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1023 2080 144 80 5 chr4 57464990 57465380 -98164740 + MTC LTR MaLR 1 419 -2 1 1023 3929 162 169 91 chr4 57465384 57466331 -98163789 + MTC-int LTR MaLR 1 1099 -159 1 1023 1199 62 0 0 chr4 57466331 57466477 -98163643 + B1_Mus2 SINE Alu 2 147 0 1 1023 3929 162 169 91 chr4 57466477 57466676 -98163444 + MTC-int LTR MaLR 1100 1237 -21 1 1023 390 152 51 0 chr4 57466677 57466756 -98163364 + MTC LTR MaLR 1 83 -338 1 1023 3518 181 70 26 chr4 57466756 57467576 -98162544 + RMER1B Other Other 74 1066 0 1 1023 1787 165 60 0 chr4 57467588 57467921 -98162199 + MTC LTR MaLR 68 420 -1 1 1023 308 149 0 0 chr4 57468970 57469017 -98161103 - L1VL4 LINE L1 -6204 98 52 1 1023 4209 159 7 7 chr4 57469017 57469715 -98160405 + Lx LINE L1 5947 6644 -10 1 1023 655 271 111 76 chr4 57471338 57471494 -98158626 - L1MA5 LINE L1 -11 6289 6118 1 1023 394 338 29 0 chr4 57471494 57471630 -98158490 - B1F SINE Alu -5 144 5 1 1023 655 271 111 76 chr4 57471630 57471841 -98158279 - L1MA5 LINE L1 -183 6117 5909 1 1023 3371 64 28 13 chr4 57471857 57472315 -98157805 + Lx3_Mus LINE L1 6545 7009 0 1 1023 287 310 15 0 chr4 57472734 57472831 -98157289 + PB1D10 SINE Alu 10 110 -39 1 1023 347 244 13 13 chr4 57473028 57473107 -98157013 - ID4_ SINE ID -3 80 2 1 1023 471 266 14 28 chr4 57473169 57473312 -98156808 - B3A SINE B2 -14 184 44 1 1023 726 247 11 17 chr4 57473377 57473558 -98156562 - B3A SINE B2 -18 180 1 1 1023 2431 191 175 8 chr4 57473612 57473769 -98156351 - Lx9 LINE L1 -1 7643 7445 1 1023 2559 129 15 3 chr4 57473769 57474158 -98155962 + ORR1B1 LTR MaLR 1 394 0 1 1023 2431 191 175 8 chr4 57474158 57474616 -98155504 - Lx9 LINE L1 -200 7444 6926 1 1023 369 0 0 0 chr4 57474761 57474802 -98155318 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1023 4272 71 9 4 chr4 57474851 57475404 -98154716 - L1Md_F2 LINE L1 -12 6570 6015 1 1023 368 181 27 14 chr4 57475404 57475477 -98154643 - B3 SINE B2 -45 171 98 1 1023 195 220 0 0 chr4 57475630 57475680 -98154440 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 1 1023 1486 54 11 0 chr4 57475857 57476041 -98154079 + B2_Mm1t SINE B2 1 186 -7 1 1023 690 275 52 38 chr4 57476909 57477121 -98152999 - B3A SINE B2 0 216 2 1 1023 1914 155 152 24 chr4 57477128 57477537 -98152583 - RMER6B LTR ERVK 0 461 1 1 1023 238 286 26 26 chr4 57477679 57477794 -98152326 - L1MC LINE L1 -2393 3753 3639 1 1023 230 274 70 124 chr4 57478148 57478277 -98151843 - ORR1E LTR MaLR -237 122 1 1 1023 28 29 0 0 chr4 57478538 57478573 -98151547 + AT_rich Low_complexity Low_complexity 1 35 0 1 1023 312 193 0 66 chr4 57478700 57478761 -98151359 - ID4 SINE ID -22 61 5 1 1023 25 51 0 0 chr4 57478772 57478811 -98151309 + AT_rich Low_complexity Low_complexity 1 39 0 1 1023 403 244 100 36 chr4 57479282 57479422 -98150698 - B1_Mur1 SINE Alu 0 149 1 1 1023 8016 65 14 11 chr4 57479456 57480516 -98149604 - Lx3_Mus LINE L1 -164 6845 5783 1 1023 6492 69 21 53 chr4 57480516 57481522 -98148598 + L1_Mur1 LINE L1 2602 3575 -2311 1 1023 267 300 111 20 chr4 57481686 57481839 -98148281 + L1M6 LINE L1 65 231 -6265 1 1023 1087 80 0 0 chr4 57481880 57482017 -98148103 + B1_Mus2 SINE Alu 3 139 -8 1 1023 243 0 0 0 chr4 57482017 57482044 -98148076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1023 1436 89 0 5 chr4 57482173 57482366 -98147754 + B2_Mm2 SINE B2 3 194 -1 1 1023 194 310 23 11 chr4 57482818 57482906 -98147214 - L2 LINE L2 -1247 2172 2084 1 1023 258 271 20 20 chr4 57484678 57484776 -98145344 + L1MA6 LINE L1 6203 6300 0 1 1023 2284 235 74 14 chr4 57485024 57485616 -98144504 + Lx7 LINE L1 6867 7494 -202 1 1023 534 258 0 8 chr4 57486454 57486575 -98143545 + RSINE1 SINE B4 3 122 -43 1 1023 744 12 0 0 chr4 57486587 57486672 -98143448 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1023 511 271 131 33 chr4 57486676 57486981 -98143139 - Charlie4a DNA MER1_type -144 364 30 1 1023 22 0 0 0 chr4 57486981 57487003 -98143117 + AT_rich Low_complexity Low_complexity 1 22 0 1 1023 253 221 11 75 chr4 57487030 57487123 -98142997 - Lx8 LINE L1 -19 7454 7368 1 1023 478 174 18 0 chr4 57487143 57487252 -98142868 + CT-rich Low_complexity Low_complexity 2 112 0 1 1023 493 259 6 69 chr4 57487775 57487949 -98142171 - RSINE1 SINE B4 -1 164 2 1 1023 414 298 0 0 chr4 57488687 57488791 -98141329 + RSINE1 SINE B4 48 151 -14 1 1023 357 43 0 0 chr4 57488807 57488854 -98141266 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1023 1843 226 2 50 chr4 57488865 57489014 -98141106 + Lx7 LINE L1 6112 6258 -1438 1 1023 1769 156 111 15 chr4 57489014 57489347 -98140773 + ORR1B2 LTR MaLR 1 365 -2 1 1023 1843 226 2 50 chr4 57489347 57489635 -98140485 + Lx7 LINE L1 6259 6528 -1168 1 1023 2775 60 17 5 chr4 57489627 57489989 -98140131 + L1_Mm LINE L1 5248 5586 -297 1 1023 8549 29 3 1 chr4 57489989 57490983 -98139137 + L1Md_F2 LINE L1 5587 6582 0 1 1023 1666 252 59 10 chr4 57490995 57491403 -98138717 + Lx7 LINE L1 6590 7017 -679 1 1023 325 284 84 56 chr4 57491418 57491560 -98138560 - MER44A DNA MER2_type -185 154 9 1 1023 291 54 0 0 chr4 57491849 57491886 -98138234 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1023 702 65 0 0 chr4 57491887 57491979 -98138141 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1023 183 80 0 0 chr4 57491980 57492005 -98138115 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1023 1350 151 166 67 chr4 57492553 57492866 -98137254 + ORR1C1 LTR MaLR 1 344 -34 1 1023 1824 157 82 34 chr4 57492870 57493225 -98136895 + MTB_Mm LTR MaLR 36 407 0 1 1023 282 95 0 0 chr4 57493225 57493267 -98136853 + ORR1C1 LTR MaLR 337 378 0 1 1023 2453 149 30 15 chr4 57494598 57494999 -98135121 + MTB_Mm LTR MaLR 1 407 0 1 1023 688 246 63 19 chr4 57495071 57495278 -98134842 + B3 SINE B2 1 216 0 1 1023 22 0 0 0 chr4 57496124 57496146 -98133974 + AT_rich Low_complexity Low_complexity 1 22 0 1 1023 268 222 27 40 chr4 57496160 57496235 -98133885 - Lx8 LINE L1 -21 7452 7379 1 1023 363 23 0 0 chr4 57496690 57496734 -98133386 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1023 196 104 0 59 chr4 57497620 57497654 -98132466 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 1023 1167 75 0 0 chr4 57497654 57497800 -98132320 - B1_Mus2 SINE Alu 0 147 2 1 1023 196 104 0 59 chr4 57497800 57497816 -98132304 + (TTTA)n Simple_repeat Simple_repeat 4 18 0 1 1023 251 302 127 102 chr4 57499579 57499745 -98130375 + MIR SINE MIR 3 172 -90 1 1023 285 209 0 0 chr4 57500141 57500208 -98129912 + (ATG)n Simple_repeat Simple_repeat 1 67 0 1 1023 839 314 20 7 chr4 57500276 57500577 -98129543 + L1M4 LINE L1 5458 5762 -422 2 1023 246 330 44 0 chr4 57500760 57500851 -98129269 - B1F SINE Alu -40 109 15 3 1023 198 167 0 0 chr4 57500884 57500920 -98129200 + CT-rich Low_complexity Low_complexity 1 36 0 4 1023 1301 83 72 0 chr4 57500920 57501101 -98129019 - B2_Mm2 SINE B2 0 195 2 5 1023 659 200 23 55 chr4 57501406 57501552 -98128568 + ID_B1 SINE B4 80 222 -2 6 1023 370 262 73 8 chr4 57501554 57501677 -98128443 + MLT1A0 LTR MaLR 212 342 -23 7 1023 350 300 76 51 chr4 57504000 57504158 -98125962 + MLT1C LTR MaLR 21 182 -285 8 1023 267 308 61 27 chr4 57504246 57504393 -98125727 + MLT1C LTR MaLR 316 467 0 8 1023 798 302 68 29 chr4 57504969 57505279 -98124841 - ORR1E LTR MaLR 0 359 38 9 1023 983 209 5 0 chr4 57506230 57506417 -98123703 + B3 SINE B2 1 188 -28 1 1023 225 228 72 48 chr4 57507492 57507575 -98122545 - L3 LINE CR1 -279 4210 4126 1 1023 1209 97 62 0 chr4 57507838 57508033 -98122087 + L1_Mus3 LINE L1 6430 6636 -2 1 1023 661 254 150 18 chr4 57508134 57508407 -98121713 + L1MC2 LINE L1 5886 6194 -150 1 1023 274 219 123 0 chr4 57508404 57508505 -98121615 + L1MC2 LINE L1 7881 7975 -20 1 1023 269 109 22 0 chr4 57508513 57508559 -98121561 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1023 721 221 0 28 chr4 57508759 57508903 -98121217 - B1_Mur2 SINE Alu -7 142 3 1 1023 787 185 206 11 chr4 57509020 57509200 -98120920 - B3 SINE B2 0 216 2 1 1023 340 333 93 10 chr4 57509540 57509734 -98120386 + Lx8 LINE L1 7141 7350 -123 1 1023 380 77 38 13 chr4 57509738 57509817 -98120303 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1023 519 17 0 0 chr4 57509819 57509879 -98120241 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1023 751 227 30 12 chr4 57510018 57510183 -98119937 - B3A SINE B2 -26 172 5 2 1023 8384 50 0 1 chr4 57510537 57511775 -98118345 - L1_Mus1 LINE L1 0 6567 5331 2 1023 432 0 0 0 chr4 57511800 57511848 -98118272 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1023 1029 216 172 94 chr4 57511855 57512279 -98117841 - MT2A LTR ERVL -76 457 1 2 1023 974 261 18 5 chr4 57513249 57513468 -98116652 + ID_B1 SINE B4 1 222 -2 2 1023 231 333 13 0 chr4 57514354 57514432 -98115688 + ID_B1 SINE B4 40 118 -106 2 1023 1595 32 5 0 chr4 57514535 57514721 -98115399 - B2_Mm1t SINE B2 -5 188 2 2 1023 426 65 0 0 chr4 57514905 57514967 -98115153 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1023 546 311 52 22 chr4 57515011 57515281 -98114839 - B4A SINE B4 -14 278 1 2 1023 1001 156 177 0 chr4 57516156 57516348 -98113772 - URR1A DNA MER1_type 0 226 1 2 1023 579 196 7 13 chr4 57516853 57517008 -98113112 + GA-rich Low_complexity Low_complexity 2 155 0 3 1023 705 228 29 78 chr4 57517145 57517350 -98112770 + B3A SINE B2 4 198 0 3 1023 256 337 48 0 chr4 57517472 57517555 -98112565 - L2a LINE L2 -3 3423 3337 3 1023 486 0 0 0 chr4 57517568 57517622 -98112498 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1023 1347 196 113 143 chr4 57518273 57518691 -98111429 - MTC LTR MaLR 0 421 16 3 1023 278 0 54 0 chr4 57518691 57518728 -98111392 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1023 1347 196 113 143 chr4 57518728 57518743 -98111377 - MTC LTR MaLR -406 15 1 3 1023 291 288 167 8 chr4 57519740 57519866 -98110254 - MIR SINE MIR -68 194 49 3 1023 1700 171 28 6 chr4 57519889 57520207 -98109913 - ORR1D1 LTR MaLR -12 362 38 3 1023 447 302 81 49 chr4 57520517 57520740 -98109380 + MLT1A0 LTR MaLR 43 272 -93 3 1023 876 248 24 19 chr4 57520930 57521140 -98108980 + B3 SINE B2 2 212 -4 3 1023 198 50 49 24 chr4 57521144 57521185 -98108935 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 4 1023 1045 269 17 34 chr4 57521962 57522255 -98107865 + B4A SINE B4 2 289 -3 4 1023 21 0 0 0 chr4 57522293 57522314 -98107806 + AT_rich Low_complexity Low_complexity 1 21 0 4 1023 337 304 134 28 chr4 57522599 57522920 -98107200 + L1MD LINE L1 4448 4802 -1344 4 1023 344 276 88 16 chr4 57523105 57523120 -98107000 + B1F SINE Alu 4 137 -12 4 1023 430 273 36 0 chr4 57523120 57523230 -98106890 + ID_B1 SINE B4 99 212 -12 4 1023 738 109 0 0 chr4 57523340 57523450 -98106670 + (TCCC)n Simple_repeat Simple_repeat 1 110 0 4 1023 1396 248 63 13 chr4 57523516 57523912 -98106208 + MTD LTR MaLR 1 416 -3 4 1023 312 288 119 0 chr4 57523997 57524115 -98106005 - B1F SINE Alu -17 132 1 4 1023 593 304 35 18 chr4 57524379 57524607 -98105513 - B4A SINE B4 -4 288 57 4 1023 446 236 173 51 chr4 57524781 57524995 -98105125 - RMER15 LTR ERVL 0 575 336 5 1023 350 195 54 54 chr4 57525332 57525424 -98104696 + PB1D10 SINE Alu 26 117 0 5 1023 273 269 6 17 chr4 57525578 57525756 -98104364 + (CATA)n Simple_repeat Simple_repeat 1 176 0 5 1023 377 242 0 7 chr4 57525812 57525962 -98104158 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 1023 300 295 18 29 chr4 57525979 57526150 -98103970 + (CATA)n Simple_repeat Simple_repeat 2 170 0 5 1023 375 367 53 38 chr4 57526271 57526537 -98103583 + MLT1N2 LTR MaLR 56 325 -237 5 1023 1147 138 149 0 chr4 57526631 57526662 -98103458 + URR1B DNA MER1_type 1 31 -194 5 1023 354 23 0 0 chr4 57526662 57526705 -98103415 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1023 1147 138 149 0 chr4 57526705 57526868 -98103252 + URR1B DNA MER1_type 32 222 -3 5 1023 514 250 145 0 chr4 57527139 57527311 -98102809 - MER3 DNA MER1_type -8 201 5 5 1023 220 374 12 0 chr4 57527688 57527771 -98102349 + MIR3 SINE MIR 87 170 -38 5 1023 1195 54 0 0 chr4 57527838 57527985 -98102135 + B1_Mus1 SINE Alu 2 148 0 6 1023 428 192 10 0 chr4 57528636 57528735 -98101385 + (TG)n Simple_repeat Simple_repeat 1 100 0 6 1023 728 245 134 8 chr4 57528763 57529010 -98101110 - B4A SINE B4 -14 278 1 6 1023 751 305 42 0 chr4 57530153 57530389 -98099731 + MTEa LTR MaLR 1 246 -133 6 1023 193 369 12 0 chr4 57530912 57530996 -98099124 + L2a LINE L2 3339 3423 -3 6 1023 977 220 45 0 chr4 57531608 57531808 -98098312 + B3 SINE B2 1 209 -7 6 1023 1006 140 134 5 chr4 57533105 57533299 -98096821 - URR1A DNA MER1_type 0 226 8 6 1023 4453 154 10 23 chr4 57533879 57534896 -98095224 - Lx5 LINE L1 -893 6157 5152 6 1023 4237 195 24 24 chr4 57534894 57535702 -98094418 + Lx5 LINE L1 6175 6982 -68 6 1023 294 95 0 0 chr4 57536330 57536372 -98093748 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1023 252 111 0 0 chr4 57536739 57536784 -98093336 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 6 1023 898 68 213 13 chr4 57536979 57537129 -98092991 - B2_Mm2 SINE B2 -14 181 2 7 1023 417 282 0 0 chr4 57537955 57538058 -98092062 + ID_B1 SINE B4 117 219 -5 7 1023 429 268 163 21 chr4 57539434 57539575 -98090545 - RSINE1 SINE B4 0 165 5 7 1023 301 284 89 38 chr4 57539767 57539946 -98090174 + L1MC LINE L1 4173 4359 -1787 7 1023 1520 24 0 0 chr4 57540044 57540214 -98089906 + L1Md_T LINE L1 5417 5586 -297 7 127 8583 33 0 1 chr4 57540214 57541211 -98088909 + L1Md_T LINE L1 5587 6582 0 7 1024 765 261 45 0 chr4 57541970 57542146 -98087974 - B3 SINE B2 -31 185 2 7 1024 397 127 96 19 chr4 57542191 57542295 -98087825 - Lx3_Mus LINE L1 -2 7007 6896 7 1024 180 319 21 21 chr4 57542336 57542429 -98087691 - MIR3 SINE MIR -2 206 114 7 1024 183 373 101 49 chr4 57542964 57543254 -98086866 - L2a LINE L2 -31 3395 3091 7 1024 342 0 0 0 chr4 57543254 57543292 -98086828 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1024 183 373 101 49 chr4 57543292 57543305 -98086815 - L2a LINE L2 -336 3090 3073 7 1024 1383 151 0 26 chr4 57543305 57543536 -98086584 + URR1B DNA MER1_type 1 225 0 8 1024 183 373 101 49 chr4 57543536 57543657 -98086463 - L2a LINE L2 -354 3072 2948 7 1024 526 111 9 166 chr4 57543747 57543964 -98086156 - RMER17C LTR ERVK -133 277 95 8 1024 1178 48 14 0 chr4 57544375 57544520 -98085600 - B1_Mus1 SINE Alu 0 148 2 8 1024 240 286 13 0 chr4 57544527 57544604 -98085516 - L1M5 LINE L1 -443 5721 5644 8 1024 180 111 0 0 chr4 57544938 57544965 -98085155 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1024 492 338 28 0 chr4 57544965 57545097 -98085023 - RSINE1 SINE B4 -24 141 6 8 1024 1485 232 6 0 chr4 57545250 57545569 -98084551 + MTE2b LTR MaLR 59 379 0 8 1024 403 138 23 0 chr4 57545618 57545705 -98084415 + (TA)n Simple_repeat Simple_repeat 2 90 0 8 1024 662 259 132 8 chr4 57545880 57546129 -98083991 - B4A SINE B4 -8 284 5 8 1024 728 299 32 67 chr4 57546554 57546837 -98083283 - B4A SINE B4 -18 274 2 8 1024 197 333 46 69 chr4 57546888 57546975 -98083145 + L2b LINE L2 3271 3355 -20 9 1024 772 206 5 53 chr4 57548095 57548285 -98081835 - B2_Mm2 SINE B2 -14 181 1 9 1024 295 249 0 0 chr4 57548359 57548435 -98081685 - ID2 SINE ID -70 82 7 9 1024 904 262 33 72 chr4 57548490 57548569 -98081551 - B4 SINE B4 0 292 216 9 1024 248 0 31 0 chr4 57548569 57548601 -98081519 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1024 904 262 33 72 chr4 57548601 57548825 -98081295 - B4 SINE B4 -77 215 1 9 1024 198 118 0 0 chr4 57550089 57550123 -98079997 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1024 265 47 23 23 chr4 57550162 57550206 -98079914 + (TATG)n Simple_repeat Simple_repeat 1 44 0 9 1024 954 270 28 25 chr4 57550366 57550651 -98079469 - B4A SINE B4 -6 286 1 9 1024 372 257 45 9 chr4 57551646 57551756 -98078364 + RMER30 DNA MER1_type 78 191 -11 9 1024 282 290 64 14 chr4 57551857 57551997 -98078123 - MIR SINE MIR -80 182 36 9 1024 249 33 0 0 chr4 57552007 57552037 -98078083 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1024 595 243 35 0 chr4 57552045 57552189 -98077931 - B1_Mur3 SINE Alu 0 149 1 1 1024 1058 276 58 33 chr4 57552389 57552782 -98077338 - Lx8 LINE L1 0 7473 7071 1 1024 509 301 93 5 chr4 57552813 57553007 -98077113 - Lx8 LINE L1 -560 6913 6703 1 1024 216 0 0 0 chr4 57553441 57553465 -98076655 + (GGGTG)n Simple_repeat Simple_repeat 2 25 0 1 1024 275 264 28 0 chr4 57553947 57554019 -98076101 + CT-rich Low_complexity Low_complexity 3 76 0 1 1024 594 230 38 44 chr4 57554053 57554212 -98075908 - B4A SINE B4 0 292 135 1 1024 399 240 75 19 chr4 57554301 57554407 -98075713 - B4A SINE B4 -175 117 6 1 1024 510 254 0 0 chr4 57554570 57554712 -98075408 + (CATA)n Simple_repeat Simple_repeat 3 144 0 1 1024 381 272 46 14 chr4 57554957 57555073 -98075047 - B1F1 SINE Alu -1 119 1 1 1024 7690 92 10 7 chr4 57555293 57556464 -98073656 + L1_Mus4 LINE L1 5448 6622 -14 1 1024 232 303 114 57 chr4 57557243 57557383 -98072737 + MLT1E LTR MaLR 171 318 -335 1 1024 1189 266 102 21 chr4 57557793 57558177 -98071943 + MTD LTR MaLR 1 415 -4 1 1024 487 296 138 31 chr4 57558843 57559104 -98071016 + MTEa LTR MaLR 86 379 0 1 1024 330 92 92 0 chr4 57559901 57559966 -98070154 + Lx4A LINE L1 6988 7058 0 1 1024 589 165 24 6 chr4 57560141 57560306 -98069814 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1024 871 247 138 43 chr4 57560876 57561181 -98068939 - MTEb LTR MaLR 0 379 46 1 1024 289 348 0 0 chr4 57561462 57561531 -98068589 - ID4 SINE ID 0 83 15 1 1024 399 279 50 7 chr4 57561530 57561671 -98068449 - ID_B1 SINE B4 0 224 78 1 1024 2533 110 7 58 chr4 57561652 57562104 -98068016 - MT2B LTR ERVL -153 431 1 1 1024 410 248 6 184 chr4 57562371 57562534 -98067586 + ID_B1 SINE B4 82 215 -9 1 1024 180 0 0 0 chr4 57562537 57562557 -98067563 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1024 396 357 42 39 chr4 57562908 57563167 -98066953 - L1ME1 LINE L1 -1 6178 5919 1 1024 184 380 11 11 chr4 57563414 57563507 -98066613 - MIRb SINE MIR -52 216 124 1 1024 428 296 87 71 chr4 57564510 57564776 -98065344 - MLT1B LTR MaLR -119 271 2 1 1024 424 209 55 37 chr4 57564805 57564914 -98065206 + PB1D10 SINE Alu 2 112 -5 1 1024 202 293 12 74 chr4 57565897 57565978 -98064142 - MER5B DNA MER1_type -58 120 45 1 1024 997 289 34 8 chr4 57565988 57566253 -98063867 + B4A SINE B4 3 274 -18 1 1024 411 56 0 0 chr4 57566255 57566309 -98063811 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1024 3165 58 0 12 chr4 57566323 57566727 -98063393 + MTB_Mm LTR MaLR 1 399 -8 1 1024 368 308 81 50 chr4 57567069 57567291 -98062829 - RMER15 LTR ERVL 0 575 347 1 1024 241 315 108 16 chr4 57567565 57567694 -98062426 - MER5A1 DNA MER1_type -19 147 7 1 1024 378 0 0 0 chr4 57568376 57568418 -98061702 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1024 596 33 11 32 chr4 57568582 57568676 -98061444 + (TTCTC)n Simple_repeat Simple_repeat 5 96 0 1 1024 232 263 197 29 chr4 57568753 57568890 -98061230 - MIR SINE MIR -90 172 13 1 1024 441 0 0 0 chr4 57568911 57568960 -98061160 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1 1024 210 71 0 0 chr4 57568999 57569027 -98061093 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1024 1193 224 182 0 chr4 57569176 57569511 -98060609 + MTD LTR MaLR 1 396 -23 1 1024 216 336 60 81 chr4 57569530 57569679 -98060441 - MIRb SINE MIR -103 165 20 1 1024 1428 78 0 6 chr4 57570388 57570568 -98059552 + B2_Mm2 SINE B2 1 179 -16 1 1024 197 108 0 26 chr4 57570570 57570608 -98059512 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1024 373 272 49 56 chr4 57570890 57571034 -98059086 + MIR SINE MIR 92 234 -28 1 1024 372 133 0 0 chr4 57572418 57572478 -98057642 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 1 1024 369 307 30 73 chr4 57572479 57572644 -98057476 + RSINE1 SINE B4 2 159 -6 1 1024 834 28 0 60 chr4 57572644 57572795 -98057325 + (TTCTC)n Simple_repeat Simple_repeat 5 146 0 1 1024 342 0 0 0 chr4 57573721 57573759 -98056361 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1024 1864 220 12 30 chr4 57574586 57575013 -98055107 + MTD LTR MaLR 1 419 0 1 1024 242 305 72 78 chr4 57575068 57575221 -98054899 - MIRc SINE MIR -93 175 24 1 1024 583 294 69 0 chr4 57575846 57576006 -98054114 + ID_B1 SINE B4 2 172 -52 1 1024 716 298 54 0 chr4 57576092 57576297 -98053823 + B3 SINE B2 1 216 0 1 1024 801 276 39 0 chr4 57577743 57577946 -98052174 + ID_B1 SINE B4 8 218 -6 1 1024 246 356 80 7 chr4 57578099 57578249 -98051871 - MLT1N2 LTR MaLR 0 562 402 1 1024 871 229 11 22 chr4 57578812 57578991 -98051129 - B3 SINE B2 -28 188 12 1 1024 341 270 20 0 chr4 57579866 57579966 -98050154 - L1MB3 LINE L1 -7 6176 6075 1 1024 218 219 0 0 chr4 57580013 57580054 -98050066 - ID4_ SINE ID -42 41 1 1 1024 411 229 84 19 chr4 57580218 57580325 -98049795 - B4A SINE B4 -178 114 1 1 1024 248 233 65 31 chr4 57580364 57580438 -98049682 - MIRc SINE MIR -111 165 85 1 1024 324 0 0 0 chr4 57581560 57581596 -98048524 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1024 306 0 0 0 chr4 57583094 57583128 -98046992 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1024 457 16 32 0 chr4 57583128 57583189 -98046931 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1024 185 239 97 69 chr4 57583404 57583476 -98046644 + MIRc SINE MIR 75 148 -120 1 1024 629 238 13 53 chr4 57583758 57583909 -98046211 - B1_Mur1 SINE Alu -3 146 2 1 1024 424 196 34 17 chr4 57584627 57584803 -98045317 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1024 384 320 35 6 chr4 57584809 57584982 -98045138 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 1024 498 308 22 19 chr4 57584955 57585273 -98044847 + (TG)n Simple_repeat Simple_repeat 1 318 0 1 1024 951 300 45 0 chr4 57585293 57585560 -98044560 - B4A SINE B4 -8 284 6 1 1024 673 249 41 41 chr4 57585579 57585776 -98044344 - B3A SINE B2 0 198 2 1 1024 259 281 87 46 chr4 57585781 57585883 -98044237 - MIRb SINE MIR -44 224 113 1 1024 809 223 143 25 chr4 57588088 57588332 -98041788 - B4A SINE B4 -19 273 1 1 1024 228 343 63 35 chr4 57588515 57588657 -98041463 - Charlie8 DNA MER1_type -2282 146 1 1 1024 203 0 37 0 chr4 57588847 57588874 -98041246 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1024 554 230 14 41 chr4 57589294 57589439 -98040681 - MER5A DNA MER1_type -48 141 1 1 1024 676 297 68 24 chr4 57590036 57590288 -98039832 + B4A SINE B4 2 264 -28 1 1024 1090 240 31 14 chr4 57591025 57591312 -98038808 + B4 SINE B4 1 292 0 1 1024 626 234 0 9 chr4 57591312 57591647 -98038473 + (CA)n Simple_repeat Simple_repeat 1 331 0 1 1024 305 242 6 27 chr4 57591706 57591889 -98038231 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1024 220 244 0 0 chr4 57592561 57592606 -98037514 + T-rich Low_complexity Low_complexity 1 45 0 1 1024 2079 167 14 30 chr4 57593214 57593584 -98036536 - ORR1D1 LTR MaLR 0 374 11 1 1024 235 384 35 9 chr4 57594097 57594210 -98035910 + LTR88b LTR Gypsy? 7 122 -715 1 1024 224 167 21 0 chr4 57594229 57594277 -98035843 + (CAA)n Simple_repeat Simple_repeat 2 50 0 1 1024 1083 229 134 77 chr4 57594975 57595392 -98034728 - RMER4A LTR ERVK -9 457 17 1 1024 231 36 0 0 chr4 57595400 57595428 -98034692 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1024 460 202 142 19 chr4 57595430 57595536 -98034584 - RSINE1 SINE B4 -41 124 6 1 1024 425 283 9 17 chr4 57595643 57595758 -98034362 + PB1D10 SINE Alu 1 114 -3 1 1024 715 208 174 5 chr4 57596114 57596265 -98033855 + B3 SINE B2 2 163 -53 1 1024 351 0 0 0 chr4 57596265 57596304 -98033816 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1024 715 208 174 5 chr4 57596304 57596336 -98033784 + B3 SINE B2 164 214 -2 1 1024 23 0 0 0 chr4 57596336 57596359 -98033761 + AT_rich Low_complexity Low_complexity 1 23 0 1 1024 1120 250 70 49 chr4 57596518 57596846 -98033274 + MTE2b LTR MaLR 1 335 -44 1 1024 198 71 0 0 chr4 57596847 57596875 -98033245 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1024 901 229 49 15 chr4 57597077 57597281 -98032839 - B3 SINE B2 -5 211 1 1 1024 640 350 71 25 chr4 57597314 57597636 -98032484 + MER58B DNA MER1_type 1 337 -4 1 1024 345 297 39 10 chr4 57598647 57598749 -98031371 - MER20 DNA MER1_type 0 219 115 1 1024 1024 229 14 5 chr4 57598819 57599030 -98031090 + ID_B1 SINE B4 2 214 -10 1 1024 314 23 23 0 chr4 57599031 57599074 -98031046 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1024 683 238 31 56 chr4 57599239 57599435 -98030685 + B3A SINE B2 5 195 -3 1 1024 213 140 0 23 chr4 57599447 57599491 -98030629 + T-rich Low_complexity Low_complexity 4 46 0 1 1024 312 120 0 0 chr4 57599852 57599902 -98030218 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 1024 638 281 71 136 chr4 57599946 57600255 -98029865 - MLT1B LTR MaLR -60 330 42 1 1024 459 0 0 0 chr4 57600523 57600574 -98029546 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1024 330 300 90 16 chr4 57601938 57602060 -98028060 - MER117 DNA MER1_type -14 183 53 1 1024 205 128 21 21 chr4 57602200 57602248 -98027872 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1024 657 101 111 0 chr4 57602263 57602362 -98027758 - B1_Mur4 SINE Alu -7 143 34 1 1024 207 0 0 0 chr4 57602849 57602872 -98027248 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1024 3837 25 0 0 chr4 57602873 57603309 -98026811 - L1Md_F2 LINE L1 -14 6568 6133 2 1024 535 241 70 129 chr4 57603407 57603593 -98026527 + B3A SINE B2 6 180 -18 2 1024 300 62 0 84 chr4 57603594 57603665 -98026455 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 1024 392 0 21 0 chr4 57604120 57604168 -98025952 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1024 490 192 0 0 chr4 57604329 57604407 -98025713 - B3 SINE B2 -137 79 2 2 1024 837 251 86 34 chr4 57604774 57605042 -98025078 - B4A SINE B4 -10 282 1 2 1024 246 299 174 43 chr4 57606369 57606530 -98023590 + ORR1E LTR MaLR 10 191 -168 2 1024 1093 206 24 5 chr4 57606881 57607091 -98023029 + B3 SINE B2 1 214 -2 2 1024 665 235 13 51 chr4 57607256 57607413 -98022707 + RSINE1 SINE B4 15 165 0 2 1024 388 133 24 40 chr4 57607448 57607573 -98022547 + (CA)n Simple_repeat Simple_repeat 2 124 0 2 1024 629 129 17 39 chr4 57607599 57607777 -98022343 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1024 448 114 30 54 chr4 57607789 57607956 -98022164 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 1024 531 137 28 39 chr4 57607971 57608153 -98021967 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1024 433 139 22 55 chr4 57608169 57608352 -98021768 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1024 440 243 17 127 chr4 57608828 57608946 -98021174 + PB1 SINE Alu 21 125 -2 2 1024 417 295 48 32 chr4 57610043 57610169 -98019951 + B1F1 SINE Alu 1 128 -21 2 1024 315 0 0 0 chr4 57610171 57610206 -98019914 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1024 387 0 0 0 chr4 57610206 57610248 -98019872 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1024 556 351 126 22 chr4 57610315 57611018 -98019102 - L2a LINE L2 -257 3169 2396 2 1024 304 301 169 0 chr4 57611018 57611184 -98018936 - MLT1A0 LTR MaLR 0 374 181 2 1024 250 132 38 0 chr4 57611200 57611253 -98018867 + CT-rich Low_complexity Low_complexity 4 58 0 2 1024 730 272 54 65 chr4 57611286 57611349 -98018771 - B4A SINE B4 -12 280 225 2 1024 865 162 0 20 chr4 57611349 57611500 -98018620 - B1_Mur3 SINE Alu -1 148 1 2 1024 730 272 54 65 chr4 57611500 57611715 -98018405 - B4A SINE B4 -68 224 5 2 1024 386 318 36 60 chr4 57611829 57611931 -98018189 - MLT1A0 LTR MaLR -219 189 83 2 1024 1295 143 8 51 chr4 57611931 57612166 -98017954 + URR1B DNA MER1_type 1 225 0 2 1024 386 292 28 55 chr4 57612166 57612245 -98017875 - MLT1A0 LTR MaLR -283 82 10 2 1024 375 23 0 0 chr4 57612250 57612294 -98017826 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1024 332 338 85 48 chr4 57612334 57612664 -98017456 - L2a LINE L2 -1095 2324 1983 2 1024 642 356 89 24 chr4 57612925 57613383 -98016737 - L2a LINE L2 -1857 1562 1075 2 1024 24 0 0 0 chr4 57613492 57613516 -98016604 + AT_rich Low_complexity Low_complexity 1 24 0 2 1024 181 359 0 0 chr4 57614454 57614518 -98015602 + MIRc SINE MIR 103 166 -102 2 1024 846 273 48 0 chr4 57615482 57615691 -98014429 - ID_B1 SINE B4 -5 219 1 2 1024 242 257 108 0 chr4 57616335 57616409 -98013711 - MIRb SINE MIR -144 124 43 2 1024 714 341 45 8 chr4 57616561 57616827 -98013293 - Lx8 LINE L1 -158 7315 7040 2 1024 492 194 41 0 chr4 57617898 57617996 -98012124 + PB1D9 SINE Alu 10 111 -9 2 1024 1286 50 0 6 chr4 57617996 57618176 -98011944 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1024 741 194 6 11 chr4 57618176 57618353 -98011767 + GA-rich Low_complexity Low_complexity 2 177 0 2 1024 242 118 0 0 chr4 57618354 57618388 -98011732 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2 1024 1220 76 12 0 chr4 57618388 57618560 -98011560 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 2 1024 570 241 184 13 chr4 57621239 57621478 -98008642 + B4 SINE B4 2 281 -11 2 1024 795 40 0 0 chr4 57621711 57621810 -98008310 + (GA)n Simple_repeat Simple_repeat 1 99 0 2 1024 736 200 59 0 chr4 57622480 57622615 -98007505 + B1_Mur1 SINE Alu 1 143 -6 2 1024 2050 152 66 3 chr4 57622767 57623130 -98006990 - ORR1B1 LTR MaLR -8 386 1 2 1024 232 232 0 35 chr4 57623235 57623293 -98006827 - Charlie12 DNA MER1_type -14 2859 2804 2 1024 567 278 179 80 chr4 57623414 57623715 -98006405 - MTEa LTR MaLR -33 346 16 2 1024 187 360 33 58 chr4 57624062 57624183 -98005937 - L2c LINE L2 0 3387 3270 2 1024 243 330 0 21 chr4 57624768 57624864 -98005256 + CT-rich Low_complexity Low_complexity 3 96 0 2 1024 399 338 83 60 chr4 57626455 57626937 -98003183 - Tigger16a DNA Tigger -119 814 322 2 1024 1073 274 56 43 chr4 57627383 57627757 -98002363 + Lx8 LINE L1 7095 7473 0 2 1024 539 134 0 12 chr4 57628203 57628286 -98001834 + MTC LTR MaLR 1 82 -339 2 1024 749 102 0 27 chr4 57628287 57628398 -98001722 + B1_Mur4 SINE Alu 38 145 -5 2 1024 237 239 54 124 chr4 57628291 57628420 -98001700 + B4A SINE B4 126 245 -47 2 1024 1995 152 20 26 chr4 57628438 57628783 -98001337 + MTC LTR MaLR 76 418 -3 2 1024 1039 72 29 0 chr4 57628784 57628922 -98001198 + B1_Mus1 SINE Alu 1 142 -6 2 1024 623 228 225 13 chr4 57629375 57629606 -98000514 - B4 SINE B4 -10 282 3 2 1024 814 170 211 0 chr4 57629646 57629817 -98000303 + B3 SINE B2 5 211 -5 2 1024 923 325 24 87 chr4 57630051 57630429 -97999691 + MTEa LTR MaLR 1 354 -25 2 1024 181 235 0 0 chr4 57631840 57631874 -97998246 - MIR SINE MIR -117 145 112 2 1024 353 295 60 55 chr4 57632011 57632212 -97997908 + L1MD3 LINE L1 7719 7920 -75 2 1024 1303 229 82 72 chr4 57632218 57632619 -97997501 + MTD LTR MaLR 1 405 -14 2 1024 1702 199 69 6 chr4 57632817 57633165 -97996955 - ORR1D2 LTR MaLR 0 370 1 2 1024 312 70 0 0 chr4 57633286 57633329 -97996791 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1024 631 289 45 33 chr4 57634449 57634692 -97995428 + B4A SINE B4 37 282 -10 2 1024 513 0 0 0 chr4 57634731 57634788 -97995332 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1024 1251 176 19 28 chr4 57634821 57634909 -97995211 - URR1A DNA MER1_type -11 215 132 2 1024 2690 61 0 0 chr4 57634909 57635236 -97994884 - ORR1A2 LTR MaLR 0 327 1 2 1024 1251 176 19 28 chr4 57635236 57635363 -97994757 - URR1A DNA MER1_type -95 131 2 2 1024 197 363 66 0 chr4 57635635 57635726 -97994394 + MIRb SINE MIR 113 209 -59 2 1024 662 222 53 26 chr4 57636220 57636410 -97993710 + RCHARR1 DNA MER1_type 780 974 0 2 1024 328 227 100 22 chr4 57636912 57637002 -97993118 + MER58B DNA MER1_type 245 341 0 2 1024 248 315 62 68 chr4 57637039 57637216 -97992904 - LTR84a LTR ERVL -107 650 475 2 1024 796 279 35 5 chr4 57638343 57638545 -97991575 + ID_B1 SINE B4 16 223 -1 2 1024 510 139 0 0 chr4 57638545 57638631 -97991489 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 2 1024 328 290 123 46 chr4 57638979 57639109 -97991011 + MER5B DNA MER1_type 8 147 -31 2 1024 329 247 39 13 chr4 57639516 57639594 -97990526 + PB1D10 SINE Alu 17 96 -21 2 1024 844 57 0 24 chr4 57639607 57639732 -97990388 + (TAA)n Simple_repeat Simple_repeat 2 123 0 2 1024 4894 120 45 10 chr4 57639745 57640525 -97989595 - Lx4A LINE L1 -1 7057 6251 2 1024 207 69 0 0 chr4 57640828 57640857 -97989263 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 1024 696 202 8 0 chr4 57640988 57641107 -97989013 + RSINE1 SINE B4 5 124 -41 2 1024 434 101 14 0 chr4 57641107 57641176 -97988944 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1024 27 29 0 0 chr4 57641177 57641211 -97988909 + AT_rich Low_complexity Low_complexity 1 34 0 2 1024 296 321 17 59 chr4 57641553 57641672 -97988448 - PB1D10 SINE Alu -1 116 3 2 1024 462 246 96 90 chr4 57643599 57643787 -97986333 - MER2 DNA MER2_type 0 345 157 2 1024 180 0 0 0 chr4 57643987 57644007 -97986113 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1024 198 0 0 0 chr4 57644043 57644065 -97986055 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1024 637 298 91 81 chr4 57644411 57644696 -97985424 - B4 SINE B4 -3 289 2 2 1024 1073 216 67 118 chr4 57644817 57645222 -97984898 + ORR1C2 LTR MaLR 1 384 0 2 1024 227 250 79 50 chr4 57645608 57645709 -97984411 - MamRep605 Unknown Unknown -701 175 72 2 1024 497 118 26 0 chr4 57645926 57646002 -97984118 - ID4_ SINE ID -4 79 2 2 1024 228 294 2 101 chr4 57647376 57647472 -97982648 - L2a LINE L2 -94 3332 3225 2 1024 224 294 0 42 chr4 57647494 57647565 -97982555 + PB1D10 SINE Alu 46 113 -4 2 1024 447 358 86 46 chr4 57647637 57647939 -97982181 - MLT1K LTR MaLR 0 595 282 2 1024 396 210 35 0 chr4 57648497 57648587 -97981533 + PB1D10 SINE Alu 2 107 -20 2 1024 230 318 169 45 chr4 57650052 57650230 -97979890 - MIR SINE MIR -19 243 44 2 1024 487 0 32 0 chr4 57650528 57650591 -97979529 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1024 599 0 14 0 chr4 57650797 57650868 -97979252 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 1024 455 107 13 0 chr4 57652583 57652658 -97977462 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 2 1024 329 299 57 19 chr4 57653446 57653603 -97976517 - MIRb SINE MIR -83 185 23 2 1024 264 299 82 7 chr4 57654777 57654912 -97975208 - L1M5 LINE L1 -1144 5002 4858 2 1024 594 307 71 38 chr4 57655919 57656170 -97973950 + B4A SINE B4 15 276 -16 2 1024 489 76 0 0 chr4 57656170 57656236 -97973884 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1024 594 307 71 38 chr4 57656236 57656251 -97973869 + B4A SINE B4 277 290 -2 2 1024 310 364 54 25 chr4 57656399 57656641 -97973479 + L1M5 LINE L1 4983 5231 -915 2 1024 1060 243 153 17 chr4 57657156 57657492 -97972628 - MTD LTR MaLR -14 405 9 2 1024 822 231 102 53 chr4 57657614 57657820 -97972300 - B3 SINE B2 0 216 1 2 1024 586 271 38 56 chr4 57658460 57658604 -97971516 + B3A SINE B2 42 183 -15 2 1024 363 44 0 0 chr4 57658604 57658649 -97971471 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1024 586 271 38 56 chr4 57658649 57658664 -97971456 + B3A SINE B2 184 198 0 2 1024 343 267 0 90 chr4 57658672 57658783 -97971337 + MT2B LTR ERVL 155 255 -346 2 1024 852 196 0 0 chr4 57658687 57658830 -97971290 + B1_Mus2 SINE Alu 5 147 0 2 1024 1898 221 70 20 chr4 57658874 57659239 -97970881 - RLTR20B3 LTR ERVK -34 543 168 2 1024 519 31 0 0 chr4 57659239 57659304 -97970816 + (TCTCTG)n Simple_repeat Simple_repeat 1 65 0 2 1024 1898 221 70 20 chr4 57659304 57659436 -97970684 - RLTR20B3 LTR ERVK -410 167 23 2 1024 22 0 0 0 chr4 57659459 57659481 -97970639 + AT_rich Low_complexity Low_complexity 1 22 0 3 1024 2471 108 91 59 chr4 57659733 57660175 -97969945 - RMER6B LTR ERVK -5 456 1 3 1024 196 336 83 8 chr4 57660337 57660457 -97969663 + L2a LINE L2 3280 3408 -18 3 1024 336 45 0 0 chr4 57660502 57660523 -97969597 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1024 1230 55 0 0 chr4 57660523 57660669 -97969451 + B1_Mm SINE Alu 2 147 0 3 1024 336 45 0 0 chr4 57660669 57660691 -97969429 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1024 1796 249 91 24 chr4 57661884 57661900 -97968220 - MT2A LTR ERVL -7 526 517 3 1024 1000 200 50 18 chr4 57661900 57662119 -97968001 + URR1A DNA MER1_type 1 226 0 3 1024 1796 249 91 24 chr4 57662119 57662595 -97967525 - MT2A LTR ERVL -17 516 1 3 1024 235 284 30 0 chr4 57662830 57662897 -97967223 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 3 1024 2112 190 85 62 chr4 57663143 57663694 -97966426 - RLTR12A LTR ERVK -4 564 1 3 1024 244 290 206 79 chr4 57664654 57664931 -97965189 - MLT1H LTR MaLR -165 384 73 3 1024 323 302 180 16 chr4 57665284 57665412 -97964708 + ID_B1 SINE B4 58 206 -18 3 1024 474 252 20 0 chr4 57665422 57665521 -97964599 + ID_B1 SINE B4 1 101 -123 3 1024 433 281 92 15 chr4 57665992 57666122 -97963998 + ID_B1 SINE B4 85 224 0 3 1024 367 211 17 9 chr4 57666599 57666714 -97963406 + GA-rich Low_complexity Low_complexity 2 117 0 3 1024 367 389 23 0 chr4 57666837 57666968 -97963152 + RSINE1 SINE B4 15 148 -17 3 1024 185 65 0 31 chr4 57667259 57667291 -97962829 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1024 2310 120 9 3 chr4 57667787 57668121 -97961999 - ORR1A1 LTR MaLR -8 338 3 3 1024 731 251 96 109 chr4 57668258 57668580 -97961540 - MTEa LTR MaLR 0 379 62 3 1024 201 295 33 0 chr4 57668594 57668655 -97961465 + GA-rich Low_complexity Low_complexity 1 63 0 3 1024 237 235 0 0 chr4 57668673 57668724 -97961396 - MTEa LTR MaLR -325 54 4 3 1024 223 257 184 0 chr4 57668862 57668971 -97961149 + MIR3 SINE MIR 65 193 -15 3 1024 219 325 78 47 chr4 57670092 57670221 -97959899 + MIRc SINE MIR 49 181 -87 3 1024 561 289 42 28 chr4 57670312 57670526 -97959594 - MER20 DNA MER1_type 0 219 3 3 1024 245 192 108 28 chr4 57670542 57670629 -97959491 - MTE2a LTR MaLR -2 377 290 3 1024 363 167 192 14 chr4 57670903 57670976 -97959144 + PB1D10 SINE Alu 24 109 -8 3 1024 639 157 66 0 chr4 57671009 57671130 -97958990 + B1_Mur4 SINE Alu 22 150 0 3 1024 198 0 0 0 chr4 57671149 57671171 -97958949 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1025 1014 130 222 0 chr4 57671810 57671995 -97958125 + URR1A DNA MER1_type 1 226 0 3 1025 252 0 0 0 chr4 57673301 57673329 -97956791 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1025 828 176 57 26 chr4 57673660 57673853 -97956267 - MTD LTR MaLR 0 419 221 3 1025 13103 69 23 22 chr4 57673878 57674399 -97955721 - RLTR22_Mus LTR ERVK -4 1804 1293 3 1025 291 54 0 0 chr4 57674399 57674436 -97955684 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1025 13103 69 23 22 chr4 57674436 57675716 -97954404 - RLTR22_Mus LTR ERVK -516 1292 1 3 1025 183 42 0 0 chr4 57675734 57675758 -97954362 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1025 527 269 0 0 chr4 57675758 57675866 -97954254 - B1_Mur2 SINE Alu -2 147 40 3 1025 810 224 134 67 chr4 57675803 57676071 -97954049 - MTD LTR MaLR -123 296 11 3 1025 225 94 0 0 chr4 57676581 57676613 -97953507 + (CACG)n Simple_repeat Simple_repeat 4 35 0 3 1025 221 258 210 0 chr4 57677022 57677084 -97953036 - ID2 SINE ID -8 75 1 3 1025 218 368 70 9 chr4 57678795 57679009 -97951111 + L2b LINE L2 1924 2150 -1269 3 1025 335 266 36 18 chr4 57679262 57679373 -97950747 + PB1D10 SINE Alu 5 117 0 3 1025 261 274 172 35 chr4 57679537 57679711 -97950409 + L2b LINE L2 2537 2734 -685 3 1025 192 330 138 42 chr4 57679829 57680030 -97950090 + L2b LINE L2 2897 3115 -260 3 1025 764 139 65 7 chr4 57680042 57680180 -97949940 + B1_Mur2 SINE Alu 2 147 -2 3 1025 723 239 0 0 chr4 57681227 57681365 -97948755 - B1F SINE Alu -5 144 7 3 1025 43 20 0 0 chr4 57684192 57684242 -97945878 + AT_rich Low_complexity Low_complexity 1 50 0 3 1025 432 174 0 0 chr4 57684252 57684321 -97945799 - ID4_ SINE ID -13 70 2 3 1025 263 309 65 14 chr4 57684646 57684784 -97945336 - MIR SINE MIR 0 262 118 3 1025 943 248 25 0 chr4 57684848 57685050 -97945070 + B3 SINE B2 1 207 -9 3 1025 342 100 0 0 chr4 57685186 57685246 -97944874 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1025 428 279 44 0 chr4 57685553 57685689 -97944431 + ID_B1 SINE B4 81 222 -2 3 1025 26 0 0 0 chr4 57685728 57685754 -97944366 + AT_rich Low_complexity Low_complexity 1 26 0 3 1025 616 256 110 0 chr4 57687201 57687365 -97942755 - B3A SINE B2 -16 182 1 3 1025 1783 191 37 58 chr4 57687626 57688054 -97942066 + MTD LTR MaLR 1 419 0 3 1025 778 247 46 26 chr4 57689514 57689567 -97940553 - B3 SINE B2 0 198 147 3 1025 252 0 0 0 chr4 57689567 57689595 -97940525 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1025 778 204 45 26 chr4 57689595 57689734 -97940386 - B3 SINE B2 -70 146 2 3 1025 1407 54 27 0 chr4 57689762 57689947 -97940173 - B2_Mm2 SINE B2 0 195 6 3 1025 246 62 0 0 chr4 57690076 57690108 -97940012 + (CG)n Simple_repeat Simple_repeat 2 33 0 3 1025 441 0 0 0 chr4 57690108 57690156 -97939964 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1025 529 206 192 33 chr4 57690504 57690655 -97939465 + B3A SINE B2 8 182 -16 3 1025 22 35 0 0 chr4 57690667 57690696 -97939424 + AT_rich Low_complexity Low_complexity 1 29 0 3 1025 28 0 0 0 chr4 57691687 57691715 -97938405 + AT_rich Low_complexity Low_complexity 1 28 0 3 1025 207 100 0 0 chr4 57692741 57692771 -97937349 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 1025 469 272 72 0 chr4 57692771 57692896 -97937224 - ID_B1 SINE B4 -11 213 80 3 1025 539 342 119 48 chr4 57693492 57693870 -97936250 - MLT1J LTR MaLR 0 512 106 3 1025 1961 145 120 46 chr4 57693870 57694218 -97935902 - MTC LTR MaLR 0 421 38 3 1025 800 171 267 0 chr4 57694218 57694394 -97935726 - URR1B DNA MER1_type -1 224 2 3 1025 1961 145 120 46 chr4 57694394 57694436 -97935684 - MTC LTR MaLR -384 37 2 3 1025 201 139 0 0 chr4 57695150 57695193 -97934927 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1025 783 201 16 68 chr4 57695272 57695464 -97934656 - B3A SINE B2 -16 182 1 3 1025 238 250 57 45 chr4 57696137 57696225 -97933895 + MLT1D LTR MaLR 10 98 -529 3 1025 734 337 20 20 chr4 57696658 57696964 -97933156 + MLT1D LTR MaLR 194 499 -6 3 1025 1179 115 0 0 chr4 57698540 57698705 -97931415 - B2_Mm2 SINE B2 -30 165 1 3 1025 571 316 45 32 chr4 57698748 57698905 -97931215 - RSINE1 SINE B4 0 165 7 3 1025 21 36 0 0 chr4 57699002 57699030 -97931090 + AT_rich Low_complexity Low_complexity 1 28 0 3 1025 226 303 28 7 chr4 57699177 57699320 -97930800 + (TA)n Simple_repeat Simple_repeat 2 147 0 3 1025 295 105 158 73 chr4 57699367 57699449 -97930671 + PB1D10 SINE Alu 28 116 -1 3 1025 472 177 80 133 chr4 57699453 57699603 -97930517 + B1_Mur2 SINE Alu 5 146 -3 3 1025 265 309 93 9 chr4 57700017 57700125 -97929995 - PB1D10 SINE Alu 0 117 1 3 1025 462 307 118 13 chr4 57700125 57700197 -97929923 - ID SINE ID -136 88 1 3 1025 429 292 9 9 chr4 57700352 57700459 -97929661 + MER20 DNA MER1_type 92 198 -21 3 1025 188 35 35 0 chr4 57700524 57700553 -97929567 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 1025 287 241 126 0 chr4 57700718 57700805 -97929315 + LTR85a LTR Gypsy? 343 440 -262 3 1025 1108 124 28 0 chr4 57701472 57701649 -97928471 - URR1A DNA MER1_type -1 225 44 3 1025 1045 248 81 78 chr4 57704777 57705109 -97925011 - MTE2a LTR MaLR 0 379 47 3 1025 865 168 0 7 chr4 57705140 57705278 -97924842 + B1_Mus2 SINE Alu 9 145 -2 3 1025 480 153 0 0 chr4 57705305 57705390 -97924730 + GA-rich Low_complexity Low_complexity 1 85 0 3 1025 1295 48 0 6 chr4 57705393 57705561 -97924559 + (GGAAA)n Simple_repeat Simple_repeat 2 168 0 3 1025 548 214 112 0 chr4 57705565 57705736 -97924384 + B3 SINE B2 27 216 0 3 1025 384 246 68 26 chr4 57705752 57705869 -97924251 - MTD LTR MaLR -297 122 1 3 1025 766 214 0 14 chr4 57706354 57706501 -97923619 - B1_Mur3 SINE Alu 0 149 5 3 1025 653 221 31 0 chr4 57707472 57707599 -97922521 - B1F2 SINE Alu -6 143 13 3 1025 651 204 15 0 chr4 57707628 57707760 -97922360 - B1F SINE Alu 0 149 16 3 1025 294 244 57 151 chr4 57707632 57707791 -97922329 - B4 SINE B4 -68 224 81 3 1025 363 246 153 95 chr4 57708051 57708325 -97921795 + B4A SINE B4 1 290 -2 3 1025 23 68 0 0 chr4 57709207 57709251 -97920869 + AT_rich Low_complexity Low_complexity 1 44 0 3 1025 1004 114 139 0 chr4 57709325 57709346 -97920774 - B2_Mm1t SINE B2 -3 190 148 3 1025 311 65 22 0 chr4 57709346 57709392 -97920728 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1025 1164 56 0 0 chr4 57709392 57709536 -97920584 - B2_Mm2 SINE B2 -50 145 2 3 1025 195 358 138 0 chr4 57709719 57709828 -97920292 - MIRm SINE MIR -2 274 151 3 1025 307 272 75 93 chr4 57712834 57712864 -97917256 + B4 SINE B4 56 154 -138 3 1025 674 229 14 7 chr4 57712864 57713005 -97917115 + B1_Mur2 SINE Alu 3 144 -5 3 1025 307 272 75 93 chr4 57713005 57713031 -97917089 + B4 SINE B4 155 248 -44 3 1025 252 154 0 0 chr4 57713039 57713091 -97917029 + GA-rich Low_complexity Low_complexity 3 54 0 3 1025 853 306 39 25 chr4 57714232 57714514 -97915606 - B4A SINE B4 -6 286 1 3 1025 291 54 0 0 chr4 57715536 57715573 -97914547 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 3 1025 398 232 92 50 chr4 57715587 57715805 -97914315 - L1MA5 LINE L1 -6 6294 6068 3 1025 532 214 0 26 chr4 57717304 57717419 -97912701 + PB1D10 SINE Alu 6 117 0 3 1025 324 262 83 9 chr4 57717430 57717538 -97912582 + PB1D10 SINE Alu 1 116 -1 4 1025 307 75 0 0 chr4 57717569 57717609 -97912511 + 5S rRNA rRNA 2 41 -80 4 1025 254 0 83 0 chr4 57717879 57717915 -97912205 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1025 1204 62 0 0 chr4 57717915 57718060 -97912060 - B1_Mus2 SINE Alu -2 145 1 4 1025 194 98 79 32 chr4 57718155 57718218 -97911902 + (TTAA)n Simple_repeat Simple_repeat 1 66 0 4 1025 213 305 29 87 chr4 57718469 57718489 -97911631 + B4 SINE B4 69 163 -126 4 1025 349 235 74 0 chr4 57718489 57718570 -97911550 + B1F SINE Alu 1 87 -62 4 1025 384 189 48 24 chr4 57720458 57720626 -97909494 + CT-rich Low_complexity Low_complexity 3 174 0 4 1025 614 211 0 0 chr4 57720675 57720784 -97909336 - ID_B1 SINE B4 0 224 116 4 1025 186 308 8 120 chr4 57720984 57721117 -97909003 - L2 LINE L2 -814 2605 2488 4 1025 1285 161 9 30 chr4 57721169 57721399 -97908721 - URR1B DNA MER1_type 0 225 1 4 1025 507 17 0 0 chr4 57723452 57723512 -97906608 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1025 225 0 0 0 chr4 57724231 57724256 -97905864 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1025 651 163 7 21 chr4 57725682 57725826 -97904294 + CT-rich Low_complexity Low_complexity 3 144 0 4 1025 215 156 0 30 chr4 57725816 57725882 -97904238 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 4 1025 780 213 7 0 chr4 57726043 57726179 -97903941 + B1_Mur1 SINE Alu 8 144 -5 4 1025 261 0 0 0 chr4 57728121 57728150 -97901970 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1025 248 180 60 0 chr4 57729076 57729126 -97900994 + RMER30 DNA MER1_type 2 54 -148 4 1025 26 0 0 0 chr4 57729676 57729702 -97900418 + AT_rich Low_complexity Low_complexity 1 26 0 4 1025 216 0 0 0 chr4 57729998 57730022 -97900098 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1025 225 94 0 0 chr4 57730297 57730329 -97899791 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1025 181 315 54 14 chr4 57730609 57730683 -97899437 + MER5A DNA MER1_type 93 169 -20 4 1025 237 228 4 99 chr4 57731134 57731241 -97898879 + L2a LINE L2 3280 3426 0 4 1025 230 296 28 0 chr4 57731981 57732052 -97898068 - MADE2 DNA Mariner -6 74 2 4 1025 187 318 0 16 chr4 57732667 57732731 -97897389 - L3 LINE CR1 -3630 859 797 4 1025 520 235 0 0 chr4 57732926 57733024 -97897096 - RSINE1 SINE B4 -63 102 5 4 1025 761 58 10 0 chr4 57734231 57734334 -97895786 + (TCCCC)n Simple_repeat Simple_repeat 4 107 0 4 1025 490 210 10 29 chr4 57734391 57734494 -97895626 - MLT1A1 LTR MaLR 0 408 308 4 1025 236 200 58 58 chr4 57734867 57734936 -97895184 - MER5B DNA MER1_type -45 133 65 4 1025 241 254 76 11 chr4 57735164 57735253 -97894867 + MIRc SINE MIR 93 190 -78 4 1025 233 333 38 13 chr4 57735533 57735612 -97894508 + Charlie8 DNA MER1_type 126 206 -2222 4 1025 185 122 0 47 chr4 57735638 57735681 -97894439 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1025 328 284 40 109 chr4 57735681 57735855 -97894265 + L1M3 LINE L1 5651 5812 -371 4 1025 244 312 55 0 chr4 57735949 57736058 -97894062 + MIR SINE MIR 109 223 -39 4 1025 947 276 110 12 chr4 57736058 57736403 -97893717 + MTE2a LTR MaLR 1 379 0 4 1025 23 0 0 0 chr4 57736506 57736529 -97893591 + AT_rich Low_complexity Low_complexity 1 23 0 4 1025 458 237 7 0 chr4 57736529 57736668 -97893452 + (TATG)n Simple_repeat Simple_repeat 1 140 0 4 1025 435 241 168 2 chr4 57736668 57736833 -97893287 - B3 SINE B2 -13 203 2 4 1025 486 0 0 0 chr4 57736839 57736893 -97893227 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1025 858 275 102 32 chr4 57737166 57737481 -97892639 + MER2 DNA MER2_type 1 337 -8 4 1025 373 325 85 59 chr4 57737612 57737883 -97892237 - MLT1A1 LTR MaLR -243 352 75 4 1025 267 264 40 40 chr4 57738111 57738186 -97891934 + MIRm SINE MIR 193 267 -9 4 1025 192 77 0 0 chr4 57738188 57738214 -97891906 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 4 1025 371 68 17 0 chr4 57739342 57739401 -97890719 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 4 1025 235 0 57 0 chr4 57740208 57740243 -97889877 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1025 325 314 43 95 chr4 57740419 57740481 -97889639 + B4 SINE B4 36 212 -80 4 1025 645 201 63 28 chr4 57740481 57740624 -97889496 + B1F1 SINE Alu 1 148 -1 4 1025 640 179 62 0 chr4 57741121 57741233 -97888887 + ID_B1 SINE B4 102 220 -4 4 1025 769 202 6 31 chr4 57742330 57742493 -97887627 + RSINE1 SINE B4 1 159 -6 4 1025 304 240 80 80 chr4 57742793 57742906 -97887214 - B1_Mur2 SINE Alu -36 113 1 4 1025 409 257 218 0 chr4 57742806 57742907 -97887213 - ID_B1 SINE B4 -21 203 81 4 1025 201 338 101 48 chr4 57743222 57743390 -97886730 - MIRb SINE MIR -42 226 50 4 1025 290 217 167 42 chr4 57743454 57743526 -97886594 - L2c LINE L2 -6 3381 3289 4 1025 1222 277 117 32 chr4 57744503 57744944 -97885176 - MLT2B1 LTR ERVL -64 491 2 4 1025 670 244 22 0 chr4 57745274 57745409 -97884711 + B3A SINE B2 14 151 -47 4 1025 796 304 14 10 chr4 57745439 57745648 -97884472 + ID_B1 SINE B4 15 224 0 4 1025 237 75 37 19 chr4 57745648 57745702 -97884418 + (CAAAAA)n Simple_repeat Simple_repeat 3 57 0 4 1025 810 185 7 33 chr4 57745715 57745866 -97884254 + B1F SINE Alu 1 147 -2 4 1025 864 251 91 47 chr4 57746213 57746531 -97883589 + MTD LTR MaLR 86 417 -2 4 1025 612 303 29 29 chr4 57746919 57747104 -97883016 + B4A SINE B4 1 185 -107 4 1025 1115 232 29 89 chr4 57747104 57747545 -97882575 + ORR1D1 LTR MaLR 1 378 0 4 1025 335 292 9 54 chr4 57747558 57747670 -97882450 + B4A SINE B4 186 292 0 4 1025 483 215 6 11 chr4 57747706 57747880 -97882240 + (CA)n Simple_repeat Simple_repeat 1 173 0 4 1025 529 206 0 22 chr4 57747898 57748082 -97882038 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1025 391 325 46 77 chr4 57748393 57748653 -97881467 - MLT1K LTR MaLR -7 588 337 4 1025 1437 84 16 5 chr4 57749278 57749470 -97880650 - B2_Mm2 SINE B2 0 195 2 4 1025 729 185 0 15 chr4 57749649 57749786 -97880334 + B1_Mur4 SINE Alu 12 146 -4 4 1025 651 87 0 0 chr4 57749786 57749890 -97880230 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 1025 315 250 14 0 chr4 57750075 57750147 -97879973 + ID4_ SINE ID 2 74 -9 4 1025 370 231 26 0 chr4 57750507 57750585 -97879535 + ID_B1 SINE B4 70 149 -75 4 1025 1202 132 59 41 chr4 57750690 57750911 -97879209 - URR1B DNA MER1_type 0 225 1 4 1025 271 247 12 36 chr4 57750927 57751011 -97879109 + ID4 SINE ID 2 83 0 4 1025 721 254 15 50 chr4 57751023 57751222 -97878898 + B3A SINE B2 1 192 -6 4 1025 250 290 14 28 chr4 57751306 57751377 -97878743 + ID4 SINE ID 3 72 -11 4 1025 245 274 13 27 chr4 57751310 57751385 -97878735 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 4 1025 824 284 10 19 chr4 57752359 57752567 -97877553 - B4A SINE B4 -28 264 59 4 1025 296 44 44 0 chr4 57752594 57752639 -97877481 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 1025 904 177 206 0 chr4 57752646 57752821 -97877299 - B3 SINE B2 -5 211 1 4 1025 336 232 61 18 chr4 57753215 57753329 -97876791 + GA-rich Low_complexity Low_complexity 2 120 0 4 1025 426 248 154 0 chr4 57753436 57753553 -97876567 - ID_B1 SINE B4 -6 218 84 4 1025 1425 258 38 38 chr4 57754233 57754600 -97875520 - MTEa LTR MaLR 0 379 13 4 1025 679 175 50 21 chr4 57754966 57755106 -97875014 + B1F2 SINE Alu 3 146 -3 4 1025 446 237 176 7 chr4 57755636 57755772 -97874348 + RSINE1 SINE B4 3 161 -4 4 1025 238 245 0 0 chr4 57755822 57755871 -97874249 + ID4 SINE ID 4 52 -31 4 1025 242 267 27 0 chr4 57755950 57756025 -97874095 + CT-rich Low_complexity Low_complexity 3 79 0 4 1025 22 0 0 0 chr4 57757676 57757698 -97872422 + AT_rich Low_complexity Low_complexity 1 22 0 4 1025 528 236 139 48 chr4 57757698 57757885 -97872235 - B3 SINE B2 -11 205 2 4 1025 1942 147 82 6 chr4 57758482 57758811 -97871309 - ORR1B1 LTR MaLR 0 394 41 4 1025 390 184 282 0 chr4 57758847 57758950 -97871170 + B3A SINE B2 10 141 -57 4 1025 1555 180 68 4 chr4 57758913 57759226 -97870894 + ORR1B2 LTR MaLR 50 374 0 4 1025 237 186 0 44 chr4 57759227 57759272 -97870848 + PB1D7 SINE Alu 77 119 -1 4 1025 630 163 10 0 chr4 57759453 57759551 -97870569 + B1_Mus2 SINE Alu 47 145 -2 4 1025 200 34 0 33 chr4 57759551 57759581 -97870539 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 1025 792 271 8 68 chr4 57759594 57759635 -97870485 - ID_B1 SINE B4 0 224 193 4 1025 513 218 179 46 chr4 57759635 57759808 -97870312 - B3A SINE B2 -1 197 2 4 1025 792 271 8 68 chr4 57759808 57760003 -97870117 - ID_B1 SINE B4 -32 192 2 4 1025 1026 32 0 0 chr4 57760321 57760447 -97869673 + (TG)n Simple_repeat Simple_repeat 1 126 0 4 1025 564 259 68 40 chr4 57760493 57760670 -97869450 - B4 SINE B4 -19 273 92 4 1025 1290 177 77 0 chr4 57760873 57761173 -97868947 - RLTR31B_Mm LTR ERVK -234 323 1 4 1025 295 247 13 64 chr4 57761761 57761839 -97868281 + PB1D7 SINE Alu 42 115 -5 4 1025 685 225 126 0 chr4 57761844 57762035 -97868085 + B3 SINE B2 2 216 0 4 1025 758 204 35 0 chr4 57762038 57762180 -97867940 + B1_Mus1 SINE Alu 2 148 0 4 1025 408 71 0 0 chr4 57762182 57762238 -97867882 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 4 1025 1823 117 193 11 chr4 57762362 57762533 -97867587 + RMER17C LTR ERVK 1 234 -176 4 1025 459 52 0 0 chr4 57762533 57762591 -97867529 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1025 1823 117 193 11 chr4 57762591 57762766 -97867354 + RMER17C LTR ERVK 235 410 0 4 1025 942 224 196 10 chr4 57762844 57763155 -97866965 - RMER10A LTR ERVL -10 432 64 5 1025 455 224 83 9 chr4 57763232 57763340 -97866780 - PB1D7 SINE Alu 0 120 5 5 1025 1296 126 16 0 chr4 57763412 57763603 -97866517 + B2_Mm2 SINE B2 2 195 0 5 1025 985 312 102 17 chr4 57765245 57765708 -97864412 - RMER5 LTR ERV1 0 534 33 5 1025 462 188 60 29 chr4 57765927 57766054 -97864066 + B1_Mur2 SINE Alu 10 149 0 5 1025 318 304 163 57 chr4 57766074 57766274 -97863846 + MLT1L LTR MaLR 42 269 -341 5 1025 513 0 0 0 chr4 57766279 57766336 -97863784 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 5 1025 779 188 21 28 chr4 57766336 57766472 -97863648 - B1_Mur3 SINE Alu -13 136 1 5 1025 318 304 163 57 chr4 57766472 57766498 -97863622 + MLT1L LTR MaLR 270 292 -318 5 1025 907 183 14 0 chr4 57766503 57766645 -97863475 + B1_Mur4 SINE Alu 1 144 -6 5 1025 1184 56 0 7 chr4 57766657 57766800 -97863320 + B1_Mus2 SINE Alu 1 142 -5 5 1025 236 220 0 74 chr4 57766818 57766829 -97863291 + B4A SINE B4 81 87 -205 5 1025 386 200 125 87 chr4 57766829 57766933 -97863187 + PB1D10 SINE Alu 3 110 -7 5 1025 1262 102 11 0 chr4 57766941 57767117 -97863003 + B2_Mm1t SINE B2 2 179 -14 5 1025 410 80 284 118 chr4 57767168 57767295 -97862825 + B2_Mm2 SINE B2 47 194 -1 5 1025 721 200 27 27 chr4 57767481 57767630 -97862490 - B1_Mur1 SINE Alu 0 149 1 5 1025 462 272 84 49 chr4 57768622 57768765 -97861355 + ID_B1 SINE B4 70 217 -7 5 1025 212 196 56 56 chr4 57768720 57768774 -97861346 + PB1D7 SINE Alu 66 119 -1 5 1025 465 311 50 96 chr4 57768779 57768844 -97861276 + B3A SINE B2 4 62 -136 5 1025 1101 101 0 0 chr4 57768844 57768992 -97861128 + B1_Mus1 SINE Alu 1 148 0 5 1025 465 311 50 96 chr4 57768992 57769125 -97860995 + B3A SINE B2 63 193 -5 5 1025 425 296 81 29 chr4 57769165 57769301 -97860819 + B1F SINE Alu 6 148 -1 5 1025 268 317 139 37 chr4 57769910 57770097 -97860023 - LTR85b LTR Gypsy? -204 580 375 5 1025 253 163 0 20 chr4 57770143 57770193 -97859927 + B1_Mur3 SINE Alu 95 143 -6 5 1025 249 33 0 0 chr4 57770193 57770223 -97859897 + (GGGGA)n Simple_repeat Simple_repeat 5 34 0 5 1025 302 259 193 36 chr4 57770727 57770867 -97859253 - RSINE1 SINE B4 -3 162 1 5 1025 249 40 39 39 chr4 57771319 57771371 -97858749 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 5 1025 902 98 19 7 chr4 57771765 57771894 -97858226 - B1_Mus2 SINE Alu 0 147 33 5 1025 624 295 22 54 chr4 57772079 57772301 -97857819 + B3A SINE B2 1 215 -1 5 1025 1369 107 0 11 chr4 57772322 57772504 -97857616 + B2_Mm2 SINE B2 1 182 -13 5 1025 189 0 0 0 chr4 57772504 57772525 -97857595 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1025 939 149 0 26 chr4 57772542 57772694 -97857426 + B1_Mur4 SINE Alu 3 150 0 5 1025 360 263 13 44 chr4 57772695 57772706 -97857414 + B4 SINE B4 80 120 -104 5 1025 543 184 0 0 chr4 57772706 57772793 -97857327 + PB1D9 SINE Alu 5 91 -29 5 1025 360 263 13 44 chr4 57772793 57772805 -97857315 + B4 SINE B4 121 176 -48 5 1025 230 0 33 0 chr4 57772805 57772835 -97857285 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 5 1025 317 273 25 98 chr4 57772835 57772847 -97857273 + ID_B1 SINE B4 177 191 -33 5 1025 481 222 18 36 chr4 57772841 57772953 -97857167 + PB1D10 SINE Alu 7 116 -1 5 1025 411 275 120 77 chr4 57773270 57773479 -97856641 + MLT1C LTR MaLR 44 261 -206 5 1025 344 304 17 42 chr4 57773586 57773759 -97856361 + MLT1C LTR MaLR 287 467 0 5 1025 443 188 50 40 chr4 57773794 57773894 -97856226 + B1_Mur2 SINE Alu 49 149 0 5 1025 189 94 0 0 chr4 57774120 57774152 -97855968 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 5 1025 1354 178 145 50 chr4 57774236 57774657 -97855463 - RMER6B LTR ERVK 0 461 1 5 1025 225 281 18 0 chr4 57774733 57774790 -97855330 - ID SINE ID -163 61 4 5 1025 474 61 0 0 chr4 57774795 57774861 -97855259 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1025 254 312 0 105 chr4 57775010 57775096 -97855024 - ID4_ SINE ID 0 83 7 5 1025 433 284 0 18 chr4 57775096 57775207 -97854913 - PB1D10 SINE Alu -8 109 1 5 1025 379 252 50 0 chr4 57775480 57775579 -97854541 + U6 snRNA snRNA 2 105 -2 5 1025 389 318 109 55 chr4 57775777 57775960 -97854160 + ID_B1 SINE B4 25 217 -7 5 1025 445 292 14 35 chr4 57775823 57775965 -97854155 + B1F SINE Alu 9 147 -2 5 1025 183 156 0 0 chr4 57775971 57776003 -97854117 + A-rich Low_complexity Low_complexity 4 35 0 5 1025 273 228 170 47 chr4 57776008 57776114 -97854006 + B1_Mur3 SINE Alu 3 121 -28 5 1025 226 297 16 0 chr4 57776194 57776258 -97853862 + CT-rich Low_complexity Low_complexity 4 68 0 5 1025 1072 75 0 0 chr4 57776258 57776392 -97853728 + B1_Mus1 SINE Alu 1 134 -14 5 1025 180 0 0 0 chr4 57776392 57776412 -97853708 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 5 1025 268 329 0 12 chr4 57776415 57776498 -97853622 - ID_B1 SINE B4 -21 203 122 5 1025 333 228 13 0 chr4 57776855 57776934 -97853186 - ID4 SINE ID -2 81 2 5 1025 279 0 0 0 chr4 57777710 57777741 -97852379 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1025 827 274 121 19 chr4 57777741 57777998 -97852122 - B4 SINE B4 -9 283 1 5 1025 278 261 254 25 chr4 57778454 57778470 -97851650 + ID_B1 SINE B4 80 224 0 5 1025 513 238 0 10 chr4 57778470 57778572 -97851548 + PB1D9 SINE Alu 19 119 -1 5 1025 201 39 0 0 chr4 57778624 57778650 -97851470 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 5 1025 724 209 15 0 chr4 57779321 57779455 -97850665 + B1_Mur1 SINE Alu 5 140 -9 5 1025 210 37 0 0 chr4 57779456 57779483 -97850637 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1025 461 235 98 0 chr4 57779499 57779601 -97850519 + PB1D7 SINE Alu 1 112 -8 5 1025 282 324 77 19 chr4 57779629 57779733 -97850387 + PB1D10 SINE Alu 1 110 -7 5 1025 635 213 69 52 chr4 57779757 57779930 -97850190 + Lx8 LINE L1 6969 7144 -329 5 1025 1082 34 6 110 chr4 57779935 57780099 -97850021 + B1_Mm SINE Alu 1 147 0 5 1025 198 0 0 0 chr4 57780107 57780129 -97849991 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1025 714 244 32 50 chr4 57780138 57780358 -97849762 + B3 SINE B2 1 216 0 5 1025 321 275 104 40 chr4 57780363 57780488 -97849632 + L1MC3 LINE L1 6914 7046 -739 5 1025 427 222 0 22 chr4 57780506 57780598 -97849522 + B1F2 SINE Alu 23 112 -37 5 1025 2737 67 19 11 chr4 57780639 57781017 -97849103 - L1Md_F3 LINE L1 0 6584 6204 5 1025 416 268 188 38 chr4 57781084 57781297 -97848823 + Lx8 LINE L1 7227 7471 -2 5 1025 296 236 97 0 chr4 57781386 57781458 -97848662 + B1F1 SINE Alu 1 79 -70 5 1025 343 200 0 0 chr4 57781400 57781460 -97848660 + ID_B1 SINE B4 100 159 -65 5 1025 619 247 145 0 chr4 57781462 57781648 -97848472 + B3 SINE B2 4 216 0 5 1025 232 276 123 23 chr4 57781974 57782104 -97848016 - MIRb SINE MIR -68 200 58 5 1025 661 197 16 8 chr4 57782123 57782251 -97847869 + B1F SINE Alu 1 129 -20 5 1025 526 217 13 86 chr4 57782251 57782273 -97847847 + ID_B1 SINE B4 82 220 -4 5 1025 209 116 58 0 chr4 57782335 57782404 -97847716 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 5 1025 266 300 17 0 chr4 57782473 57782533 -97847587 + tRNA-Ala-GCY_ tRNA tRNA 8 68 -7 5 1025 180 0 0 0 chr4 57782548 57782568 -97847552 + (CCA)n Simple_repeat Simple_repeat 2 21 0 5 1025 547 250 35 59 chr4 57782581 57782751 -97847369 - MER53 DNA hAT -27 166 1 5 1025 517 261 18 0 chr4 57782900 57783011 -97847109 - PB1D7 SINE Alu -7 113 1 5 1025 253 279 119 32 chr4 57783043 57783169 -97846951 - MER57D LTR ERV1 -58 353 217 5 1025 1793 136 121 123 chr4 57783419 57783840 -97846280 - MTC LTR MaLR 0 421 2 5 1025 1102 101 0 0 chr4 57783840 57783988 -97846132 + B1_Mus1 SINE Alu 1 148 0 5 1025 620 272 14 23 chr4 57784332 57784482 -97845638 - ID_B1 SINE B4 -73 219 73 5 1025 499 154 65 0 chr4 57784483 57784652 -97845468 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1025 661 111 46 17 chr4 57784676 57784851 -97845269 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1025 565 120 49 7 chr4 57784862 57785005 -97845115 + (TG)n Simple_repeat Simple_repeat 1 149 0 5 1025 240 315 40 27 chr4 57785036 57785111 -97845009 - ID4_ SINE ID -7 76 1 5 1025 345 297 16 25 chr4 57785124 57785245 -97844875 - B1F SINE Alu -9 140 21 5 1025 471 313 53 0 chr4 57785328 57785459 -97844661 - RSINE1 SINE B4 -3 162 25 5 1025 328 255 72 45 chr4 57785522 57785633 -97844487 + PB1D10 SINE Alu 1 114 -3 5 1025 180 0 0 0 chr4 57785633 57785653 -97844467 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1025 28 0 0 0 chr4 57786438 57786466 -97843654 + AT_rich Low_complexity Low_complexity 1 28 0 5 1025 726 218 0 33 chr4 57786475 57786627 -97843493 + B1_Mur1 SINE Alu 1 147 -2 5 1025 1265 97 38 0 chr4 57786631 57786817 -97843303 + B2_Mm1t SINE B2 1 193 0 5 1025 411 56 0 0 chr4 57786920 57786974 -97843146 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1025 26 0 0 0 chr4 57787132 57787158 -97842962 + AT_rich Low_complexity Low_complexity 1 26 0 5 1025 495 0 0 0 chr4 57787161 57787216 -97842904 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 5 1025 327 234 92 41 chr4 57787218 57787316 -97842804 - MIRc SINE MIR -128 140 38 5 1025 341 43 0 21 chr4 57787318 57787366 -97842754 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 5 1025 471 155 0 0 chr4 57787359 57787443 -97842677 + CT-rich Low_complexity Low_complexity 2 85 0 5 1025 566 289 11 126 chr4 57787876 57788058 -97842062 - RSINE1 SINE B4 0 165 5 5 1025 234 0 0 0 chr4 57788120 57788146 -97841974 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1025 698 235 105 12 chr4 57788180 57788352 -97841768 - B3 SINE B2 -15 201 14 6 1025 217 362 12 12 chr4 57788566 57788579 -97841541 - ID4 SINE ID 0 83 3 6 1025 231 353 15 0 chr4 57788579 57788647 -97841473 - ID SINE ID -153 71 3 6 1025 806 195 0 32 chr4 57788666 57788805 -97841315 + B1_Mur2 SINE Alu 1 139 -10 6 1025 269 51 0 25 chr4 57788805 57788845 -97841275 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1025 806 195 0 32 chr4 57788845 57788859 -97841261 + B1_Mur2 SINE Alu 140 149 0 6 1025 419 181 128 35 chr4 57788871 57788957 -97841163 + B1F1 SINE Alu 13 106 -21 6 1025 730 197 11 43 chr4 57789029 57789188 -97840932 - ID_B1 SINE B4 -63 229 80 6 1025 242 298 106 0 chr4 57789208 57789302 -97840818 - B1F2 SINE Alu -30 119 16 6 1025 450 248 25 42 chr4 57789325 57789443 -97840677 - PB1D10 SINE Alu -1 116 1 6 1025 271 274 0 31 chr4 57789386 57789450 -97840670 - B4A SINE B4 -150 142 81 6 1025 899 174 7 0 chr4 57789645 57789794 -97840326 + B1_Mur4 SINE Alu 1 150 0 6 1025 265 304 36 0 chr4 57790140 57790252 -97839868 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 6 1025 386 299 34 27 chr4 57790327 57790475 -97839645 - B1F SINE Alu 0 149 1 6 1025 220 271 52 124 chr4 57790484 57790581 -97839539 - PB1 SINE Alu -3 124 35 6 1025 465 318 62 57 chr4 57790613 57790840 -97839280 - 7SK RNA RNA -99 232 5 6 1025 243 279 144 59 chr4 57790840 57790855 -97839265 - B1F SINE Alu 0 149 138 6 1025 195 42 0 0 chr4 57790855 57790879 -97839241 + (TGG)n Simple_repeat Simple_repeat 1 24 0 6 1025 243 279 144 59 chr4 57790879 57790981 -97839139 - B1F SINE Alu -12 137 22 6 1025 375 214 277 0 chr4 57791087 57791199 -97838921 - B1_Mus1 SINE Alu 0 148 6 6 1025 279 113 0 0 chr4 57791889 57791942 -97838178 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1025 692 152 79 57 chr4 57792052 57792192 -97837928 - B1_Mur4 SINE Alu -5 145 3 6 1025 972 146 0 0 chr4 57792466 57792630 -97837490 + (TCCCC)n Simple_repeat Simple_repeat 4 167 0 6 1025 1136 71 0 0 chr4 57792638 57792779 -97837341 - B1_Mus1 SINE Alu -6 142 2 6 1025 427 289 0 152 chr4 57792783 57792934 -97837186 - B1F SINE Alu -1 148 21 6 1025 242 197 32 16 chr4 57792935 57792997 -97837123 + GA-rich Low_complexity Low_complexity 4 66 0 6 1025 211 239 0 61 chr4 57793091 57793140 -97836980 + B1_Mur1 SINE Alu 100 145 -4 6 1025 852 10 0 0 chr4 57793142 57793239 -97836881 + (CAAAG)n Simple_repeat Simple_repeat 3 99 0 6 1025 2343 111 74 24 chr4 57793299 57793677 -97836443 + RMER10B LTR ERVL 1 397 -1 6 1025 516 59 0 0 chr4 57794607 57794675 -97835445 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1025 657 38 0 0 chr4 57794675 57794754 -97835366 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1025 211 191 0 0 chr4 57794861 57794903 -97835217 + (CATG)n Simple_repeat Simple_repeat 3 44 0 6 1025 205 161 0 0 chr4 57796668 57796699 -97833421 + polypurine Low_complexity Low_complexity 2 32 0 6 1025 351 294 9 73 chr4 57797221 57797331 -97832789 + PB1D7 SINE Alu 5 107 -13 6 1025 594 200 61 15 chr4 57797338 57797470 -97832650 + B1_Mur1 SINE Alu 5 142 -7 6 1025 2293 238 58 6 chr4 57797973 57798476 -97831644 + Lx6 LINE L1 6760 7288 -172 6 1025 198 0 0 0 chr4 57798483 57798505 -97831615 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 6 1025 456 136 20 20 chr4 57798904 57799002 -97831118 + CT-rich Low_complexity Low_complexity 4 101 0 6 1025 811 142 16 155 chr4 57799009 57799267 -97830853 - RMER1B Other Other 0 1066 845 6 1025 1330 67 90 0 chr4 57799645 57799823 -97830297 - B2_Mm2 SINE B2 0 195 2 6 1025 627 97 26 9 chr4 57800009 57800123 -97829997 + (TTCC)n Simple_repeat Simple_repeat 2 117 0 6 1025 270 347 20 35 chr4 57800123 57800234 -97829886 - PB1D7 SINE Alu -6 114 2 6 1025 338 234 16 0 chr4 57800275 57800339 -97829781 + MER5A1 DNA MER1_type 80 144 -22 6 1025 261 283 62 62 chr4 57800458 57800571 -97829549 + MER20 DNA MER1_type 107 219 0 6 1025 647 311 0 43 chr4 57800581 57800766 -97829354 + B3A SINE B2 22 198 0 6 1025 542 262 0 0 chr4 57800788 57800895 -97829225 + B1_Mur1 SINE Alu 43 149 0 6 1025 378 107 0 0 chr4 57800895 57800951 -97829169 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1025 325 262 57 16 chr4 57800951 57801075 -97829045 + L1MD LINE L1 3081 3209 -2937 6 1025 840 255 62 0 chr4 57801078 57801286 -97828834 + ID_B1 SINE B4 4 224 0 6 1025 459 136 11 54 chr4 57801286 57801379 -97828741 + PB1D9 SINE Alu 31 119 -1 6 1025 309 200 0 0 chr4 57802121 57802176 -97827944 - ID4 SINE ID -27 56 2 6 1026 754 255 35 82 chr4 57802771 57803002 -97827118 - ID_B1 SINE B4 -4 220 1 6 1026 376 317 19 0 chr4 57803175 57803279 -97826841 - PB1 SINE Alu -20 107 2 6 1026 180 27 81 0 chr4 57803366 57803403 -97826717 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1026 371 257 0 0 chr4 57803420 57803494 -97826626 - PB1D7 SINE Alu -10 110 37 6 1026 414 286 127 0 chr4 57803652 57803778 -97826342 + B3A SINE B2 19 160 -38 6 1026 310 100 33 0 chr4 57803781 57803841 -97826279 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1026 510 106 92 41 chr4 57803850 57803948 -97826172 - URR1A DNA MER1_type -43 183 81 6 1026 668 229 35 7 chr4 57803984 57804129 -97825991 + B3A SINE B2 1 149 -49 6 1026 1484 17 0 11 chr4 57804507 57804687 -97825433 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 6 1026 306 0 0 0 chr4 57804687 57804721 -97825399 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1026 371 241 82 0 chr4 57804721 57804820 -97825300 - PB1D10 SINE Alu 0 120 12 6 1026 382 255 33 0 chr4 57804742 57804853 -97825267 - ID_B1 SINE B4 -54 170 57 6 1026 374 195 49 0 chr4 57804901 57804983 -97825137 - L1MB2 LINE L1 -261 5910 5825 6 1026 239 98 73 0 chr4 57805038 57805079 -97825041 - B1F SINE Alu -93 56 13 6 1026 189 0 0 0 chr4 57805225 57805246 -97824874 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1026 400 322 8 41 chr4 57805246 57805369 -97824751 - PB1 SINE Alu -2 125 7 6 1026 646 223 30 65 chr4 57805445 57805613 -97824507 - RSINE1 SINE B4 -2 163 2 6 1026 586 263 14 7 chr4 57805633 57805771 -97824349 - B1F SINE Alu -6 143 5 6 1026 24 0 0 0 chr4 57805777 57805801 -97824319 + AT_rich Low_complexity Low_complexity 1 24 0 6 1026 380 267 51 76 chr4 57806452 57806467 -97823653 - B4 SINE B4 -72 220 207 6 1026 669 90 0 0 chr4 57806467 57806578 -97823542 + (TC)n Simple_repeat Simple_repeat 2 112 0 6 1026 650 149 89 16 chr4 57806578 57806684 -97823436 - B1_Mus2 SINE Alu -21 126 12 6 1026 380 267 51 76 chr4 57806684 57806720 -97823400 - B4 SINE B4 -86 206 67 6 1026 997 145 168 15 chr4 57807261 57807457 -97822663 - URR1A DNA MER1_type 0 226 1 6 1026 21 36 0 0 chr4 57807855 57807883 -97822237 + GC_rich Low_complexity Low_complexity 1 28 0 6 1026 198 0 0 0 chr4 57808023 57808045 -97822075 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1026 407 302 68 40 chr4 57808265 57808441 -97821679 + B3A SINE B2 1 181 -17 6 1026 186 43 0 0 chr4 57808768 57808791 -97821329 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6 1026 180 0 0 0 chr4 57809003 57809023 -97821097 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1026 673 252 0 15 chr4 57809023 57809160 -97820960 - B1_Mur2 SINE Alu -13 136 2 6 1026 768 276 82 39 chr4 57809178 57809457 -97820663 + B4A SINE B4 1 291 -1 6 1026 210 306 0 0 chr4 57809471 57809520 -97820600 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1026 191 88 0 29 chr4 57809533 57809568 -97820552 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1026 472 252 131 0 chr4 57809646 57809753 -97820367 + B3A SINE B2 1 121 -77 6 1026 378 263 20 50 chr4 57809755 57809855 -97820265 + PB1D10 SINE Alu 21 117 0 6 1026 180 230 30 90 chr4 57809870 57809937 -97820183 + MIR SINE MIR 194 256 -6 6 1026 2347 172 35 4 chr4 57809939 57810349 -97819771 + MTC LTR MaLR 1 413 -8 6 1026 512 244 8 25 chr4 57810401 57810523 -97819597 - PB1D7 SINE Alu 0 120 1 6 1026 216 351 0 0 chr4 57810624 57810701 -97819419 - RSINE1 SINE B4 -83 82 6 6 1026 249 324 0 0 chr4 57811402 57811415 -97818705 + B4A SINE B4 73 85 -207 6 1026 369 304 6 0 chr4 57811415 57811513 -97818607 + PB1D10 SINE Alu 1 104 -16 6 1026 3185 128 4 71 chr4 57811513 57812075 -97818045 - RLTR28 LTR ERVL 0 524 1 6 1026 248 267 0 0 chr4 57812084 57812144 -97817976 + A-rich Low_complexity Low_complexity 1 60 0 6 1026 197 333 0 32 chr4 57812304 57812366 -97817754 - MIR3 SINE MIR -31 177 118 6 1026 600 14 0 0 chr4 57812596 57812665 -97817455 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1026 671 151 42 50 chr4 57812666 57812785 -97817335 - RSINE1 SINE B4 -42 123 6 6 1026 459 181 7 20 chr4 57812788 57812935 -97817185 + CT-rich Low_complexity Low_complexity 1 145 0 6 1026 336 258 167 16 chr4 57812935 57813061 -97817059 - ID_B1 SINE B4 -1 223 79 6 1026 1058 229 136 24 chr4 57813455 57813470 -97816650 - MTD LTR MaLR -91 328 319 6 1026 3417 40 5 0 chr4 57813470 57813868 -97816252 - MTB LTR MaLR 0 400 1 6 1026 1058 229 136 24 chr4 57813868 57814147 -97815973 - MTD LTR MaLR -101 318 1 6 1026 597 137 88 64 chr4 57815997 57816122 -97813998 - B1_Mus2 SINE Alu 0 147 20 6 1026 705 179 28 40 chr4 57816182 57816380 -97813740 - B3 SINE B2 -1 197 15 6 1026 626 214 274 0 chr4 57816444 57816612 -97813508 - B3 SINE B2 0 216 3 7 1026 406 295 32 136 chr4 57816619 57816839 -97813281 - B3A SINE B2 0 198 2 7 1026 267 250 41 20 chr4 57816909 57817007 -97813113 + L1MC4a LINE L1 7551 7650 -232 7 1026 881 264 24 19 chr4 57817205 57817410 -97812710 - ID_B1 SINE B4 -10 214 9 7 1026 1631 163 51 43 chr4 57817469 57817818 -97812302 - ORR1B2 LTR MaLR 0 378 24 7 1026 225 360 9 17 chr4 57818105 57818221 -97811899 + PB1D10 SINE Alu 2 116 -1 7 1026 21 0 0 0 chr4 57818372 57818393 -97811727 + AT_rich Low_complexity Low_complexity 1 21 0 7 1026 23 54 0 0 chr4 57818491 57818528 -97811592 + AT_rich Low_complexity Low_complexity 1 37 0 7 1026 442 292 20 34 chr4 57818532 57818681 -97811439 - RSINE1 SINE B4 -8 157 11 7 1026 230 260 68 0 chr4 57818707 57818780 -97811340 - ID4_ SINE ID -2 81 4 7 1026 950 75 272 0 chr4 57818842 57818989 -97811131 + B2_Mm2 SINE B2 1 187 -8 7 1026 1430 73 0 25 chr4 57819148 57819344 -97810776 + B2_Mm2 SINE B2 1 191 -4 7 1026 1118 174 50 0 chr4 57819760 57819961 -97810159 - B3 SINE B2 -5 211 1 7 1026 281 210 24 80 chr4 57819967 57820116 -97810004 - B3A SINE B2 -1 215 1 7 1026 334 299 73 18 chr4 57820121 57820230 -97809890 - PB1D7 SINE Alu -1 119 5 7 1026 400 335 15 1 chr4 57820549 57820698 -97809422 + MIRb SINE MIR 15 169 -99 7 1026 735 253 35 40 chr4 57821470 57821668 -97808452 - B3 SINE B2 -3 213 17 7 1026 744 143 50 8 chr4 57821671 57821791 -97808329 - B1_Mur3 SINE Alu -22 127 3 7 1026 559 285 87 32 chr4 57821803 57821988 -97808132 - ID_B1 SINE B4 -6 218 24 7 1026 375 229 48 12 chr4 57821988 57822072 -97808048 - B1F SINE Alu -44 105 19 7 1026 22 56 0 0 chr4 57822166 57822202 -97807918 + AT_rich Low_complexity Low_complexity 1 36 0 7 1026 320 118 15 0 chr4 57822959 57823027 -97807093 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1026 254 355 23 90 chr4 57823063 57823088 -97807032 - B1F1 SINE Alu -25 124 56 7 1026 405 255 208 18 chr4 57823088 57823134 -97806986 - ID_B1 SINE B4 -21 203 160 7 1026 531 0 0 0 chr4 57823134 57823193 -97806927 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1026 1096 56 7 34 chr4 57823194 57823342 -97806778 - B1_Mus1 SINE Alu -4 144 1 7 1026 254 355 23 90 chr4 57823342 57823401 -97806719 - B1F1 SINE Alu -94 55 1 7 1026 405 255 208 18 chr4 57823401 57823461 -97806659 - ID_B1 SINE B4 -65 159 6 7 1026 195 69 0 0 chr4 57823524 57823553 -97806567 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1026 183 80 0 0 chr4 57823563 57823588 -97806532 + (TGG)n Simple_repeat Simple_repeat 3 27 0 7 1026 263 212 5 105 chr4 57823988 57824188 -97805932 + G-rich Low_complexity Low_complexity 1 180 0 7 1026 211 268 61 0 chr4 57824111 57824275 -97805845 + (GAGTG)n Simple_repeat Simple_repeat 5 178 0 7 1026 293 218 11 79 chr4 57824311 57824500 -97805620 + G-rich Low_complexity Low_complexity 5 180 0 7 1026 301 311 40 0 chr4 57824539 57824687 -97805433 + G-rich Low_complexity Low_complexity 5 158 0 7 1026 784 270 38 9 chr4 57824872 57825085 -97805035 - MTEb LTR MaLR -160 219 1 7 1026 669 179 17 0 chr4 57825260 57825377 -97804743 - B1_Mur3 SINE Alu 0 149 31 7 1026 522 0 0 0 chr4 57825464 57825522 -97804598 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1026 261 0 0 0 chr4 57826102 57826131 -97803989 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1026 465 19 0 0 chr4 57826326 57826380 -97803740 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1026 235 316 42 8 chr4 57826507 57826625 -97803495 + HAL1 LINE L1 1721 1842 -665 7 1026 381 166 35 0 chr4 57826789 57826878 -97803242 - B1F2 SINE Alu -21 128 29 7 1026 559 205 100 25 chr4 57826927 57827047 -97803073 - B1_Mm SINE Alu -13 134 6 7 1026 1073 250 45 90 chr4 57827074 57827430 -97802690 + MTE2a LTR MaLR 40 379 0 7 1026 767 210 0 14 chr4 57828135 57828275 -97801845 + B1_Mus1 SINE Alu 11 148 0 7 1026 858 258 0 0 chr4 57828596 57828778 -97801342 + B3A SINE B2 1 182 -16 7 1026 470 202 129 17 chr4 57828817 57828933 -97801187 + B1_Mur2 SINE Alu 1 129 -20 7 1026 327 146 0 0 chr4 57828943 57828998 -97801122 + (TAA)n Simple_repeat Simple_repeat 1 55 0 7 1026 487 43 29 0 chr4 57829453 57829523 -97800597 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1026 284 365 55 8 chr4 57829896 57830023 -97800097 - MER63D DNA AcHobo -700 361 229 7 1026 185 230 14 0 chr4 57830169 57830243 -97799877 + T-rich Low_complexity Low_complexity 2 76 0 7 1026 589 226 32 8 chr4 57830254 57830379 -97799741 - B1_Mus1 SINE Alu -19 129 2 7 1026 669 142 0 34 chr4 57830389 57830506 -97799614 - PB1D9 SINE Alu -2 118 6 7 1026 658 168 0 0 chr4 57830507 57830602 -97799518 - B1_Mur2 SINE Alu -16 133 39 7 1026 8011 63 4 15 chr4 57830624 57832282 -97797838 + L1Md_F LINE L1 641 2251 -3632 7 1026 1306 82 5 0 chr4 57832282 57832466 -97797654 + L1Md_F2 LINE L1 6398 6582 0 7 1026 395 299 101 97 chr4 57832621 57832929 -97797191 - ORR1E LTR MaLR 0 359 51 7 1026 439 250 36 27 chr4 57832962 57833058 -97797062 + PB1D10 SINE Alu 5 104 -13 7 1026 212 0 36 0 chr4 57833058 57833086 -97797034 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 7 1026 439 250 36 27 chr4 57833086 57833100 -97797020 + PB1D10 SINE Alu 105 116 -1 7 1026 419 136 0 0 chr4 57833172 57833231 -97796889 + (GGA)n Simple_repeat Simple_repeat 3 61 0 7 1026 572 73 0 12 chr4 57833231 57833314 -97796806 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 7 1026 766 209 6 65 chr4 57834241 57834410 -97795710 - RSINE1 SINE B4 -4 161 3 7 1026 252 0 0 0 chr4 57834433 57834461 -97795659 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1026 411 198 11 32 chr4 57834472 57834566 -97795554 - ID_B1 SINE B4 -11 213 122 7 1026 258 56 0 0 chr4 57835481 57835517 -97794603 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1026 512 302 96 11 chr4 57835657 57835918 -97794202 - B4A SINE B4 -8 284 2 7 1026 259 98 20 0 chr4 57835941 57835992 -97794128 - B2_Mm1t SINE B2 0 193 142 7 1026 309 234 170 9 chr4 57836099 57836211 -97793909 + ID_B1 SINE B4 86 215 -9 7 1026 234 323 53 68 chr4 57836255 57836388 -97793732 - MLT1K LTR MaLR -399 196 66 7 1026 1226 255 55 4 chr4 57836512 57836784 -97793336 + B4A SINE B4 7 292 0 7 1026 429 274 67 67 chr4 57836827 57837076 -97793044 - L1MB5 LINE L1 -297 5886 5637 7 1026 1041 225 21 56 chr4 57838521 57838808 -97791312 - MTEa LTR MaLR 0 379 103 7 1026 2240 139 49 11 chr4 57838913 57839283 -97790837 - ORR1B1 LTR MaLR 0 394 11 7 1026 254 219 40 40 chr4 57840113 57840189 -97789931 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 7 1026 301 234 31 0 chr4 57840190 57840254 -97789866 - ID4 SINE ID -15 68 3 7 1026 201 74 0 0 chr4 57840256 57840283 -97789837 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 7 1026 746 255 13 89 chr4 57840327 57840551 -97789569 + B3 SINE B2 1 207 -9 7 1026 844 137 21 28 chr4 57840563 57840706 -97789414 - B1_Mus1 SINE Alu -6 142 1 7 1026 243 0 0 0 chr4 57840794 57840821 -97789299 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1026 578 273 156 49 chr4 57840821 57841064 -97789056 - B4 SINE B4 -23 269 1 7 1026 265 312 0 84 chr4 57841451 57841570 -97788550 - MLT1A1 LTR MaLR -258 150 42 7 1026 441 0 0 0 chr4 57841744 57841793 -97788327 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1026 266 244 70 0 chr4 57842881 57842967 -97787153 + PB1D7 SINE Alu 4 95 -25 7 1026 204 83 0 53 chr4 57843268 57843306 -97786814 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 7 1026 225 0 0 0 chr4 57843313 57843338 -97786782 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1026 1228 61 0 0 chr4 57843338 57843485 -97786635 - B1_Mm SINE Alu 0 147 1 7 1026 684 209 55 41 chr4 57843489 57843634 -97786486 - B1_Mur1 SINE Alu -2 147 1 7 1026 387 315 32 83 chr4 57843634 57843670 -97786450 - B4 SINE B4 -208 84 57 7 1026 447 242 156 69 chr4 57843652 57843825 -97786295 - ID_B1 SINE B4 -28 196 9 7 1026 686 160 101 30 chr4 57845485 57845668 -97784452 - B3 SINE B2 0 195 1 7 1026 419 245 117 25 chr4 57846355 57846518 -97783602 + L1M2 LINE L1 5590 5767 -524 7 1026 228 279 16 32 chr4 57846634 57846697 -97783423 - Tigger5 DNA MER2_type -2300 106 45 7 1026 296 257 39 142 chr4 57846709 57846836 -97783284 + PB1D10 SINE Alu 3 116 -1 7 1026 248 77 26 0 chr4 57846901 57846940 -97783180 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1026 495 0 0 0 chr4 57846940 57846994 -97783126 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1026 340 303 212 0 chr4 57847498 57847630 -97782490 - RSINE1 SINE B4 -3 162 3 7 1026 567 219 40 48 chr4 57847650 57847775 -97782345 - B1_Mur1 SINE Alu -2 147 24 7 1026 504 199 239 14 chr4 57847779 57847917 -97782203 - B3 SINE B2 0 216 48 7 1026 430 297 93 56 chr4 57848060 57848274 -97781846 + MIRb SINE MIR 47 268 0 7 1026 535 289 104 10 chr4 57848506 57848698 -97781422 - MER2 DNA MER2_type -133 212 3 7 1026 380 263 84 42 chr4 57848881 57849000 -97781120 + PB1 SINE Alu 1 124 -3 7 1026 218 372 8 40 chr4 57849009 57849135 -97780985 + BC1_Mm scRNA scRNA 1 122 -30 7 1026 336 237 56 84 chr4 57849131 57849190 -97780930 + MT2B2 LTR ERVL 102 156 -428 7 1026 564 214 25 33 chr4 57849190 57849285 -97780835 + B1_Mur1 SINE Alu 1 94 -55 7 1026 786 156 216 6 chr4 57849285 57849466 -97780654 + URR1A DNA MER1_type 1 219 -7 8 1026 873 141 13 60 chr4 57849537 57849688 -97780432 + B1_Mur4 SINE Alu 1 144 -6 8 1026 216 0 0 0 chr4 57849691 57849715 -97780405 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 8 1026 203 133 0 0 chr4 57849859 57849889 -97780231 + (C)n Simple_repeat Simple_repeat 1 30 0 8 1026 684 301 164 8 chr4 57850133 57850535 -97779585 - MLT1C LTR MaLR -1 466 2 8 1026 225 0 0 0 chr4 57850570 57850595 -97779525 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 1026 375 236 114 93 chr4 57850595 57850724 -97779396 - RSINE1 SINE B4 -17 148 17 8 1026 989 131 207 6 chr4 57851138 57851307 -97778813 + B3 SINE B2 3 205 -11 8 1026 836 20 0 10 chr4 57851895 57851998 -97778122 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1026 210 167 0 0 chr4 57852074 57852110 -97778010 - PB1D7 SINE Alu -60 60 25 8 1026 346 350 25 0 chr4 57852538 57852658 -97777462 + B4A SINE B4 1 123 -169 8 1026 623 94 0 10 chr4 57852829 57852926 -97777194 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1026 212 333 27 0 chr4 57852937 57853012 -97777108 + ID_B1 SINE B4 81 157 -67 8 1026 245 308 43 32 chr4 57852994 57853088 -97777032 - B1F1 SINE Alu -54 95 1 8 1026 193 293 96 13 chr4 57853744 57853844 -97776276 + MIRb SINE MIR 55 168 -100 8 1026 845 284 83 18 chr4 57853999 57854275 -97775845 + MTE2b LTR MaLR 16 309 -70 8 1026 510 83 0 0 chr4 57854686 57854758 -97775362 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1026 333 200 0 14 chr4 57855375 57855446 -97774674 - PB1 SINE Alu -30 97 28 8 1026 1164 223 70 96 chr4 57856233 57856659 -97773461 + RMER10A LTR ERVL 1 415 -27 8 1026 561 68 0 0 chr4 57856660 57856734 -97773386 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 8 1026 383 265 41 49 chr4 57856809 57856932 -97773188 + B1F SINE Alu 26 147 -2 8 1026 382 231 13 0 chr4 57856949 57857027 -97773093 + ID2 SINE ID 2 80 -3 8 1026 495 182 0 83 chr4 57857157 57857213 -97772907 + MTE2b LTR MaLR 277 325 -94 8 1026 1289 108 32 0 chr4 57857213 57857399 -97772721 - B2_Mm2 SINE B2 -2 193 2 8 1026 495 182 0 83 chr4 57857399 57857450 -97772670 + MTE2b LTR MaLR 326 375 -44 8 1026 323 162 0 0 chr4 57857478 57857532 -97772588 + MTD LTR MaLR 372 419 0 8 1026 518 264 78 0 chr4 57857643 57857772 -97772348 + B1_Mur1 SINE Alu 11 149 0 8 1026 317 269 64 18 chr4 57859122 57859232 -97770888 + PB1D7 SINE Alu 1 115 -5 8 1026 522 0 0 0 chr4 57859335 57859393 -97770727 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1026 519 242 132 16 chr4 57861338 57861527 -97768593 - B3 SINE B2 -4 212 2 8 1026 852 254 5 62 chr4 57861534 57861744 -97768376 - B3A SINE B2 0 198 1 8 1026 775 245 23 60 chr4 57861885 57862102 -97768018 + B3 SINE B2 2 210 -6 8 1026 704 94 9 0 chr4 57862106 57862212 -97767908 + (TCC)n Simple_repeat Simple_repeat 2 108 0 8 1026 515 212 88 9 chr4 57863405 57863519 -97766601 - B1_Mur2 SINE Alu -2 147 25 8 1026 798 231 15 44 chr4 57863520 57863724 -97766396 - B3A SINE B2 0 198 1 8 1026 361 284 99 73 chr4 57864502 57864734 -97765386 - LTR82B Low_complexity ERVL -420 410 173 8 1026 823 280 97 54 chr4 57864577 57864875 -97765245 - LTR82A LTR ERVL -560 312 2 8 1026 1085 77 21 0 chr4 57865027 57865170 -97764950 - B1_Mm SINE Alu 0 147 2 8 1026 778 189 28 0 chr4 57865690 57865833 -97764287 + B1_Mus2 SINE Alu 1 147 0 8 1026 1118 76 7 0 chr4 57866000 57866145 -97763975 - B1_Mus1 SINE Alu -1 147 2 8 1026 510 319 22 0 chr4 57866647 57866782 -97763338 - RSINE1 SINE B4 0 165 28 8 1026 826 182 51 29 chr4 57866708 57866883 -97763237 - B2_Mm2 SINE B2 -16 179 1 8 1026 1733 16 0 0 chr4 57866900 57867091 -97763029 - B2_Mm1a SINE B2 -1 192 2 8 1026 1999 86 7 7 chr4 57867096 57867377 -97762743 - ORR1A2 LTR MaLR -46 281 1 8 1026 456 200 0 0 chr4 57868363 57868478 -97761642 + (CAG)n Simple_repeat Simple_repeat 1 115 0 8 1026 241 323 162 22 chr4 57870819 57870955 -97759165 + MER5C1 DNA MER1_type 5 159 -104 8 1026 335 254 51 29 chr4 57871406 57871544 -97758576 - L1MC4 LINE L1 -660 7382 7242 8 1026 272 258 168 66 chr4 57871555 57871829 -97758291 - L1MC4 LINE L1 -965 7077 6776 8 1026 621 0 0 0 chr4 57871928 57871997 -97758123 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 8 1026 455 313 58 101 chr4 57872068 57872345 -97757775 - B4 SINE B4 0 292 28 8 1026 361 296 136 48 chr4 57872395 57872601 -97757519 - RMER15 LTR ERVL -5 570 347 8 1026 1021 284 78 29 chr4 57873652 57873996 -97756124 - MLT1A0 LTR MaLR -4 361 1 8 1026 607 177 25 66 chr4 57874342 57874463 -97755657 + B1_Mm SINE Alu 23 138 -9 8 1026 393 22 0 0 chr4 57874463 57874509 -97755611 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 8 1026 450 53 0 0 chr4 57874527 57874584 -97755536 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 8 1026 305 287 122 15 chr4 57875196 57875327 -97754793 + B1F SINE Alu 5 149 0 8 1026 337 247 84 17 chr4 57875333 57875430 -97754690 + ID4 SINE ID 2 99 -53 8 1026 243 179 0 0 chr4 57875958 57875997 -97754123 - PB1D7 SINE Alu -2 118 80 8 1026 679 109 25 0 chr4 57876005 57876124 -97753996 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 8 1026 342 0 0 0 chr4 57876245 57876283 -97753837 + (CATAT)n Simple_repeat Simple_repeat 5 42 0 8 1026 510 17 0 0 chr4 57876285 57876344 -97753776 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1026 408 20 0 0 chr4 57876344 57876392 -97753728 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1026 3131 59 23 0 chr4 57876524 57876911 -97753209 + MTA_Mm LTR MaLR 1 396 0 8 1026 7484 51 104 4 chr4 57876911 57877909 -97752211 + MTA_Mm-int LTR MaLR 1 1098 0 8 1026 3241 47 23 0 chr4 57877909 57878296 -97751824 + MTA_Mm LTR MaLR 1 396 0 8 1026 269 285 81 92 chr4 57879491 57879621 -97750499 + MIR SINE MIR 36 160 -102 8 1026 370 229 92 37 chr4 57879621 57879730 -97750390 - PB1D7 SINE Alu -1 119 5 8 1026 269 285 81 92 chr4 57879730 57879773 -97750347 + MIR SINE MIR 161 207 -55 8 1026 266 176 150 12 chr4 57880918 57881005 -97749115 + PB1D10 SINE Alu 50 150 0 8 1026 26 0 0 0 chr4 57881022 57881048 -97749072 + AT_rich Low_complexity Low_complexity 1 26 0 8 1026 547 216 85 116 chr4 57881095 57881238 -97748882 - RMER10A LTR ERVL 0 442 296 8 1026 189 0 0 0 chr4 57881238 57881259 -97748861 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1026 547 216 85 116 chr4 57881259 57881408 -97748712 - RMER10A LTR ERVL -147 295 159 8 1026 261 208 0 0 chr4 57881427 57881480 -97748640 - MLT1E2 LTR MaLR -557 70 18 8 1026 198 0 0 0 chr4 57881515 57881537 -97748583 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 8 1026 216 194 0 0 chr4 57881654 57881690 -97748430 + polypyrimidine Low_complexity Low_complexity 2 37 0 8 1026 249 175 0 0 chr4 57881719 57881759 -97748361 - PB1D10 SINE Alu -31 86 47 8 1026 333 0 0 0 chr4 57881760 57881797 -97748323 + (TATAA)n Simple_repeat Simple_repeat 1 37 0 8 1026 1151 278 31 78 chr4 57881848 57881984 -97748136 + L1_Rod LINE L1 3797 3910 -1937 8 1026 1289 62 37 53 chr4 57881984 57882173 -97747947 - B2_Mm2 SINE B2 -9 186 1 8 1026 1151 278 30 77 chr4 57882173 57882600 -97747520 + L1_Rod LINE L1 3911 4332 -1515 8 1026 1319 99 15 40 chr4 57882600 57882800 -97747320 + B2_Mm2 SINE B2 1 195 0 8 1026 743 258 30 113 chr4 57882800 57882998 -97747122 + L1_Rod LINE L1 4341 4493 -1650 8 1026 1130 35 14 20 chr4 57882998 57883144 -97746976 + B1_Mm SINE Alu 1 145 -2 8 1026 215 31 31 0 chr4 57883146 57883178 -97746942 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8 1026 743 236 14 68 chr4 57883178 57883373 -97746747 + L1_Rod LINE L1 4494 4679 -1464 8 1026 7685 72 24 30 chr4 57883476 57885249 -97744871 - L1VL2 LINE L1 -1591 2024 263 8 1026 294 100 98 20 chr4 57885758 57885809 -97744311 - ORR1C2 LTR MaLR 0 384 330 8 1026 25983 9 1 1 chr4 57885841 57890260 -97739860 - L1Md_A LINE L1 -2 6580 2162 8 1026 980 19 0 0 chr4 57890260 57890367 -97739753 - U6 snRNA snRNA 0 107 1 8 1026 29 60 0 0 chr4 57890483 57890533 -97739587 + AT_rich Low_complexity Low_complexity 1 50 0 8 1026 1299 102 16 0 chr4 57890700 57890886 -97739234 + B2_Mm1t SINE B2 2 190 -3 8 1026 799 156 175 0 chr4 57891126 57891286 -97738834 - ORR1C2 LTR MaLR -25 359 172 8 1026 186 71 0 0 chr4 57891286 57891314 -97738806 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1026 1283 178 21 29 chr4 57891314 57891593 -97738527 - ORR1C2 LTR MaLR -86 284 1 8 1026 780 269 0 0 chr4 57891625 57891785 -97738335 - RSINE1 SINE B4 -3 162 3 8 1026 1221 62 0 0 chr4 57892516 57892662 -97737458 - B1_Mus2 SINE Alu 0 147 2 8 1026 525 229 27 9 chr4 57893460 57893570 -97736550 - B1F SINE Alu -9 140 29 8 1026 201 307 85 85 chr4 57894257 57894339 -97735781 - MIR SINE MIR -152 110 29 8 1026 822 256 82 0 chr4 57894413 57894608 -97735512 + ID_B1 SINE B4 5 215 -9 8 1026 447 188 0 70 chr4 57894634 57894720 -97735400 - B1_Mur2 SINE Alu -51 98 19 8 1026 500 267 166 0 chr4 57894855 57895042 -97735078 + ID_B1 SINE B4 1 218 -6 8 1026 246 105 0 0 chr4 57895606 57895644 -97734476 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 8 1026 289 247 141 0 chr4 57896789 57896874 -97733246 + MER94 DNA AcHobo 37 133 -1 8 1026 396 0 0 0 chr4 57897023 57897067 -97733053 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1026 274 233 57 23 chr4 57897468 57897556 -97732564 + ID_B1 SINE B4 84 174 -50 8 1026 21 0 0 0 chr4 57897748 57897769 -97732351 + AT_rich Low_complexity Low_complexity 1 21 0 8 1026 194 128 26 0 chr4 57898626 57898665 -97731455 + CT-rich Low_complexity Low_complexity 4 43 0 8 1026 351 0 0 0 chr4 57899391 57899430 -97730690 + (CTGTG)n Simple_repeat Simple_repeat 3 41 0 8 1026 598 267 0 62 chr4 57899853 57900045 -97730075 + B3A SINE B2 3 182 -16 8 1026 24 32 0 0 chr4 57900068 57900099 -97730021 + AT_rich Low_complexity Low_complexity 1 31 0 8 1026 749 228 0 0 chr4 57900103 57900239 -97729881 + B1_Mur3 SINE Alu 1 136 -13 9 1026 391 311 47 47 chr4 57900285 57900457 -97729663 - RMER12 LTR ERVK -466 856 685 9 1026 720 57 0 0 chr4 57900470 57900558 -97729562 + BC1_Mm scRNA scRNA 1 88 -64 9 1026 219 167 15 29 chr4 57901019 57901087 -97729033 + (TA)n Simple_repeat Simple_repeat 2 68 0 9 1026 26 0 0 0 chr4 57901167 57901193 -97728927 + AT_rich Low_complexity Low_complexity 1 26 0 9 1026 1251 144 38 5 chr4 57901193 57901402 -97728718 - B3 SINE B2 0 216 1 9 1026 297 219 25 76 chr4 57901566 57901645 -97728475 - ID4_ SINE ID -4 79 5 9 1026 1496 32 36 41 chr4 57902109 57902304 -97727816 - B2_Mm2 SINE B2 0 195 2 9 1026 241 318 23 12 chr4 57902552 57902638 -97727482 + MIRc SINE MIR 43 129 -139 9 1026 462 284 0 0 chr4 57903333 57903435 -97726685 + PB1D10 SINE Alu 16 117 0 9 1026 1049 199 5 41 chr4 57903445 57903665 -97726455 + B3 SINE B2 5 216 0 9 1026 39 0 0 0 chr4 57903725 57903764 -97726356 + AT_rich Low_complexity Low_complexity 1 39 0 9 1026 233 214 143 0 chr4 57903810 57903894 -97726226 + Charlie2a DNA MER1_type 1142 1237 -1624 9 1026 481 279 66 104 chr4 57905093 57905305 -97724815 - MER3 DNA MER1_type -1 208 5 9 1026 358 231 0 0 chr4 57905367 57905432 -97724688 + ID4_ SINE ID 15 79 -4 9 1026 223 178 0 0 chr4 57905992 57906037 -97724083 + A-rich Low_complexity Low_complexity 1 45 0 9 1026 200 316 0 17 chr4 57906982 57907040 -97723080 + GA-rich Low_complexity Low_complexity 1 57 0 9 1026 237 33 0 0 chr4 57907203 57907233 -97722887 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1026 245 208 38 0 chr4 57907591 57907644 -97722476 + G-rich Low_complexity Low_complexity 3 57 0 9 1026 348 24 0 0 chr4 57909377 57909418 -97720702 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1026 276 149 0 0 chr4 57909854 57909901 -97720219 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1026 737 257 149 4 chr4 57910224 57910466 -97719654 - B4 SINE B4 -12 280 4 9 1026 366 303 59 82 chr4 57910842 57910878 -97719242 + ID SINE ID 5 40 -184 9 1026 2282 98 31 0 chr4 57910878 57911195 -97718925 - ORR1A2 LTR MaLR 0 327 1 9 1026 366 303 59 82 chr4 57911195 57911377 -97718743 + ID_B1 SINE B4 41 218 -6 9 1026 412 234 102 0 chr4 57911263 57911381 -97718739 + B1F2 SINE Alu 14 147 -2 9 1026 504 216 11 0 chr4 57911442 57911530 -97718590 + ID_B1 SINE B4 127 215 -9 9 1026 22 0 0 0 chr4 57911543 57911565 -97718555 + AT_rich Low_complexity Low_complexity 1 22 0 9 1026 928 132 76 23 chr4 57911903 57912074 -97718046 + B2_Mm2 SINE B2 1 180 -15 9 1026 240 35 0 0 chr4 57912074 57912103 -97718017 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1026 859 236 35 0 chr4 57912114 57912288 -97717832 + B3A SINE B2 2 181 -17 9 1026 240 111 0 0 chr4 57912295 57912331 -97717789 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1026 31 0 0 0 chr4 57912360 57912391 -97717729 + AT_rich Low_complexity Low_complexity 1 31 0 9 1026 442 213 42 21 chr4 57912713 57912809 -97717311 + PB1D10 SINE Alu 13 110 -7 9 1026 910 171 20 7 chr4 57912875 57913028 -97717092 + URR1B DNA MER1_type 1 155 -70 9 1026 4709 214 59 23 chr4 57913038 57913442 -97716678 - Lx5 LINE L1 0 7050 6633 9 1026 306 0 0 0 chr4 57913442 57913476 -97716644 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1026 4709 214 59 23 chr4 57913476 57914135 -97715985 - Lx5 LINE L1 -418 6632 5948 9 1026 479 134 0 47 chr4 57914149 57914235 -97715885 + URR1B DNA MER1_type 138 219 -6 9 1026 497 232 77 35 chr4 57914432 57914575 -97715545 + B1F SINE Alu 1 149 0 9 1026 277 211 0 0 chr4 57914578 57914630 -97715490 + B3A SINE B2 1 52 -146 9 1026 326 293 39 29 chr4 57914812 57914914 -97715206 - PB1D10 SINE Alu -13 104 2 9 1026 308 293 47 39 chr4 57914917 57915045 -97715075 - MER5A DNA MER1_type -1 188 60 9 1026 244 273 69 29 chr4 57915304 57915406 -97714714 + ID_B1 SINE B4 71 176 -48 9 1026 373 241 0 22 chr4 57915331 57915420 -97714700 + PB1D10 SINE Alu 23 109 -8 9 1026 856 238 30 0 chr4 57915832 57916000 -97714120 + ID_B1 SINE B4 51 223 -1 9 1026 339 287 11 0 chr4 57916070 57916164 -97713956 + PB1D10 SINE Alu 1 95 -22 9 1026 249 200 0 98 chr4 57916110 57916171 -97713949 + 4.5SRNA scRNA scRNA 40 94 0 9 1026 448 49 0 0 chr4 57916195 57916256 -97713864 - B1_Mus2 SINE Alu 0 147 87 9 1026 321 47 0 0 chr4 57916724 57916767 -97713353 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 9 1026 740 236 0 13 chr4 57917040 57917190 -97712930 + B1_Mur2 SINE Alu 2 149 0 9 1026 1052 178 32 39 chr4 57917628 57917908 -97712212 + RMER17C LTR ERVK 1 278 -132 9 1026 635 37 12 0 chr4 57917937 57918019 -97712101 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 9 1026 236 191 43 0 chr4 57918695 57918742 -97711378 + MLT1J1 LTR MaLR 101 149 -295 9 1026 230 234 160 60 chr4 57919196 57919296 -97710824 - L2c LINE L2 -20 3367 3258 9 1026 813 147 0 0 chr4 57919297 57919453 -97710667 + (GGA)n Simple_repeat Simple_repeat 3 158 0 9 1026 254 289 114 23 chr4 57919692 57919823 -97710297 - MIRb SINE MIR -100 168 26 9 1026 439 194 17 127 chr4 57920086 57920104 -97710016 + MT2B LTR ERVL 153 157 -444 9 1026 969 113 35 0 chr4 57920104 57920246 -97709874 + B1_Mus2 SINE Alu 1 147 0 9 1026 189 94 0 0 chr4 57920277 57920309 -97709811 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1026 842 230 62 0 chr4 57920629 57920807 -97709313 + B4A SINE B4 41 229 -63 9 1026 924 257 66 7 chr4 57920808 57921082 -97709038 + B4A SINE B4 3 292 0 9 1026 369 239 0 0 chr4 57921149 57921220 -97708900 + B4 SINE B4 221 291 -1 9 1026 253 230 147 20 chr4 57922109 57922211 -97707909 - PB1D10 SINE Alu -2 115 1 9 1026 1742 226 71 78 chr4 57923838 57924376 -97705744 + Lx7 LINE L1 6887 7420 -276 9 1026 253 177 32 16 chr4 57924430 57924493 -97705627 + Lx7 LINE L1 7633 7696 0 9 1026 1257 60 0 0 chr4 57924501 57924651 -97705469 + L1Md_F2 LINE L1 5437 5586 -297 9 1026 8539 36 1 0 chr4 57924651 57925646 -97704474 + L1Md_F2 LINE L1 5587 6582 0 9 1026 885 132 8 0 chr4 57925743 57925872 -97704248 + B3 SINE B2 1 130 -86 9 1026 838 161 0 21 chr4 57926063 57926203 -97703917 + B1_Mur4 SINE Alu 2 138 -12 9 1026 268 83 42 0 chr4 57926250 57926298 -97703822 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1026 321 204 61 51 chr4 57926577 57926675 -97703445 + MTEa LTR MaLR 279 377 -2 9 1026 513 0 0 0 chr4 57927452 57927509 -97702611 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1026 213 154 0 0 chr4 57927510 57927549 -97702571 + GA-rich Low_complexity Low_complexity 1 39 0 9 1026 841 183 80 45 chr4 57927704 57927904 -97702216 - B3 SINE B2 -1 215 9 9 1026 286 331 6 31 chr4 57928694 57928853 -97701267 + GA-rich Low_complexity Low_complexity 4 158 0 9 1026 741 255 40 131 chr4 57929712 57930064 -97700056 - MLT1B LTR MaLR -5 385 66 9 1026 205 152 0 0 chr4 57930388 57930421 -97699699 + CT-rich Low_complexity Low_complexity 4 36 0 9 1026 671 336 56 4 chr4 57930464 57930733 -97699387 - B4A SINE B4 -2 290 8 9 1026 320 133 17 0 chr4 57930734 57930794 -97699326 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 9 1026 32 0 0 0 chr4 57930823 57930855 -97699265 + AT_rich Low_complexity Low_complexity 1 32 0 9 1026 382 248 55 117 chr4 57930856 57930984 -97699136 - PB1D7 SINE Alu 0 120 1 9 1026 457 301 69 106 chr4 57931098 57931249 -97698871 - ORR1E LTR MaLR -122 237 97 9 1026 701 142 88 22 chr4 57931249 57931386 -97698734 - B1_Mur2 SINE Alu -1 148 3 9 1026 457 301 69 106 chr4 57931386 57931479 -97698641 - ORR1E LTR MaLR -263 96 2 9 1026 190 238 80 91 chr4 57931586 57931674 -97698446 - MER5A DNA MER1_type -53 136 50 9 1026 395 327 54 31 chr4 57931676 57931810 -97698310 - RLTR14 LTR ERV1 0 382 249 9 1026 216 0 0 0 chr4 57931810 57931834 -97698286 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1026 395 327 54 31 chr4 57931834 57931923 -97698197 - RLTR14 LTR ERV1 -134 248 155 9 1026 1641 41 0 5 chr4 57932043 57932239 -97697881 + B2_Mm2 SINE B2 1 195 0 9 1026 2444 180 82 21 chr4 57932347 57932436 -97697684 - RLTR20B1 LTR ERVK -7 556 470 9 1026 198 0 0 0 chr4 57932436 57932458 -97697662 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1026 2444 180 82 21 chr4 57932458 57932891 -97697229 - RLTR20B1 LTR ERVK -94 469 4 9 1027 1562 159 69 66 chr4 57933854 57934294 -97695826 - RMER17C LTR ERVK -519 439 16 9 1027 2535 115 161 23 chr4 57934297 57934918 -97695202 - RMER17C-int LTR ERVK 0 3238 2532 9 1027 843 163 105 0 chr4 57934906 57935078 -97695042 - RMER17C-int LTR ERVK -879 2359 2170 9 1027 961 178 149 24 chr4 57935075 57935323 -97694797 - RMER17C-int LTR ERVK -1219 2019 1741 9 1027 237 221 0 0 chr4 57935755 57935823 -97694297 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1027 406 329 47 102 chr4 57935845 57936119 -97694001 - B4 SINE B4 -20 272 14 9 1027 2666 139 10 5 chr4 57936201 57936612 -97693508 - MTC LTR MaLR -8 413 1 9 1027 466 294 78 0 chr4 57936666 57936870 -97693250 - L1M3 LINE L1 -374 5806 5587 9 1027 887 92 0 8 chr4 57936996 57937128 -97692992 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 9 1027 769 267 40 15 chr4 57937131 57937329 -97692791 - ID_B1 SINE B4 -21 203 1 9 1027 215 352 69 37 chr4 57937337 57937582 -97692538 + L2 LINE L2 2638 2890 -529 9 1027 865 182 0 34 chr4 57938251 57938386 -97691734 + B1_Mur2 SINE Alu 6 138 -11 9 1027 216 0 0 0 chr4 57938386 57938410 -97691710 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1027 865 182 0 34 chr4 57938410 57938422 -97691698 + B1_Mur2 SINE Alu 139 148 -1 9 1027 567 238 174 23 chr4 57938464 57938636 -97691484 - B3A SINE B2 0 198 1 9 1027 585 255 0 40 chr4 57938728 57938879 -97691241 + ID_B1 SINE B4 80 224 0 9 1027 1091 120 0 13 chr4 57938917 57939069 -97691051 + B1_Mur4 SINE Alu 1 150 0 9 1027 1422 70 27 0 chr4 57939135 57939322 -97690798 - B2_Mm1t SINE B2 -1 192 1 9 1027 216 0 0 0 chr4 57939612 57939636 -97690484 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9 1027 1194 93 0 0 chr4 57939636 57939797 -97690323 - B2_Mm2 SINE B2 -33 162 2 9 1027 201 39 0 0 chr4 57939869 57939895 -97690225 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1027 1136 55 7 0 chr4 57939897 57940043 -97690077 - B1_Mm SINE Alu 0 147 1 1 1027 451 275 116 51 chr4 57940047 57940262 -97689858 - L1MB5 LINE L1 -39 6135 5907 1 1027 375 121 0 0 chr4 57940341 57940399 -97689721 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1 1027 387 0 0 0 chr4 57940410 57940453 -97689667 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1 1027 373 237 21 21 chr4 57940453 57940548 -97689572 - PB1D10 SINE Alu -10 107 13 1 1027 678 200 8 0 chr4 57940653 57940778 -97689342 - B3 SINE B2 -13 203 78 1 1027 1051 76 0 0 chr4 57941160 57941291 -97688829 + B1_Mus1 SINE Alu 2 132 -16 1 1027 435 19 0 0 chr4 57941291 57941343 -97688777 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 1 1027 2172 188 30 197 chr4 57941383 57942119 -97688001 - RLTR18 LTR ERVK -3 613 1 1 1027 1375 182 84 10 chr4 57942214 57942513 -97687607 - ORR1D1 LTR MaLR 0 374 54 1 1027 510 308 7 27 chr4 57942771 57942921 -97687199 + ID_B1 SINE B4 70 216 -8 1 1027 443 60 15 0 chr4 57943054 57943121 -97686999 + (CCAA)n Simple_repeat Simple_repeat 4 71 0 1 1027 444 221 136 76 chr4 57943132 57943235 -97686885 + B1F SINE Alu 10 126 -23 1 1027 723 256 136 57 chr4 57943235 57943299 -97686821 - ORR1E LTR MaLR -2 357 293 1 1027 1135 76 7 0 chr4 57943299 57943444 -97686676 + B1_Mur4 SINE Alu 1 146 -4 1 1027 723 256 136 57 chr4 57943444 57943710 -97686410 - ORR1E LTR MaLR -67 292 1 1 1027 444 221 136 76 chr4 57943710 57943738 -97686382 + B1F SINE Alu 127 149 0 1 1027 1515 257 68 22 chr4 57944624 57945198 -97684922 - Lx7 LINE L1 0 7460 6974 1 1027 1952 149 53 81 chr4 57945198 57945593 -97684527 - RLTR41 LTR ERV1 -1 445 62 1 1027 1210 220 183 39 chr4 57945618 57945978 -97684142 - Lx7 LINE L1 -717 6979 6568 1 1027 823 247 161 4 chr4 57946154 57946414 -97683706 - RMER21B LTR ERV1 -277 565 265 1 1027 3636 238 20 62 chr4 57946452 57946661 -97683459 - Lx7 LINE L1 -1190 6506 6337 1 1027 1321 91 48 16 chr4 57946661 57946850 -97683270 - B2_Mm2 SINE B2 0 195 1 1 1027 3636 238 20 62 chr4 57946850 57946983 -97683137 - Lx7 LINE L1 -1360 6336 6209 1 1027 2764 111 8 3 chr4 57946983 57947364 -97682756 - RLTR9A2 LTR ERVK 0 383 1 1 1027 3636 241 21 58 chr4 57947364 57948017 -97682103 - Lx7 LINE L1 -1488 6208 5573 1 1027 405 235 61 0 chr4 57948179 57948277 -97681843 - PB1D10 SINE Alu -13 104 1 1 1027 180 0 0 0 chr4 57948296 57948316 -97681804 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 1027 911 208 57 38 chr4 57948316 57948516 -97681604 - B3 SINE B2 -10 206 1 1 1027 276 30 0 0 chr4 57948574 57948607 -97681513 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1027 240 299 176 10 chr4 57948650 57948849 -97681271 - Zaphod DNA Tip100 -1791 2240 2009 1 1027 326 261 65 0 chr4 57949197 57949289 -97680831 - MER74B LTR ERVL -29 593 496 1 1027 502 265 28 56 chr4 57949343 57949487 -97680633 - RSINE1 SINE B4 0 165 26 1 1027 368 329 56 21 chr4 57949482 57949625 -97680495 - B1F2 SINE Alu -1 148 1 1 1027 250 382 50 50 chr4 57949486 57949646 -97680474 - B4 SINE B4 -68 224 65 1 1027 252 206 0 0 chr4 57949757 57949820 -97680300 + PB1D10 SINE Alu 55 117 0 1 1027 695 176 0 94 chr4 57949980 57950118 -97680002 + B1_Mus1 SINE Alu 1 125 -23 1 1027 782 226 64 18 chr4 57950120 57950291 -97679829 - B3 SINE B2 -19 197 19 1 1027 625 310 98 79 chr4 57950291 57950732 -97679388 - Zaphod DNA Tip100 -3301 730 282 1 1027 610 205 23 23 chr4 57950796 57950926 -97679194 + B1_Mur2 SINE Alu 1 130 -19 1 1027 570 247 20 33 chr4 57950997 57951148 -97678972 + RSINE1 SINE B4 4 152 -13 1 1027 8486 112 53 9 chr4 57951189 57952488 -97677632 + Lx4A LINE L1 5656 7058 0 1 1027 24 32 0 0 chr4 57952494 57952525 -97677595 + AT_rich Low_complexity Low_complexity 1 31 0 1 1027 694 217 0 0 chr4 57952570 57952699 -97677421 - ID_B1 SINE B4 -3 221 93 1 1027 232 279 11 95 chr4 57952614 57952709 -97677411 - MT2B2 LTR ERVL -332 252 166 1 1027 26 30 0 0 chr4 57952711 57952744 -97677376 + AT_rich Low_complexity Low_complexity 1 33 0 1 1027 221 0 0 33 chr4 57952752 57952782 -97677338 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1 1027 457 232 30 20 chr4 57952782 57952883 -97677237 - PB1D10 SINE Alu -9 108 7 1 1027 301 297 68 19 chr4 57952795 57952898 -97677222 - ID_B1 SINE B4 -48 176 69 1 1027 241 250 164 16 chr4 57953026 57953148 -97676972 - L1MA9 LINE L1 -291 6021 5882 1 1027 888 205 109 135 chr4 57953397 57953701 -97676419 + MTE2a LTR MaLR 4 299 -80 1 1027 464 239 46 118 chr4 57953977 57954129 -97675991 - MTE2a LTR MaLR -33 346 206 1 1027 252 263 95 29 chr4 57954263 57954320 -97675800 - L1M3 LINE L1 -818 5059 4996 1 1027 319 226 147 0 chr4 57954320 57954422 -97675698 - PB1D10 SINE Alu 0 117 1 1 1027 386 193 14 0 chr4 57954422 57954501 -97675619 - L1M3 LINE L1 -1119 5021 4916 1 1027 264 331 108 40 chr4 57955638 57955786 -97674334 + MIR SINE MIR 30 187 -75 1 1027 270 275 127 76 chr4 57955811 57955833 -97674287 - B1F2 SINE Alu -25 124 5 1 1027 288 250 109 43 chr4 57955833 57955925 -97674195 - ID_B1 SINE B4 -41 183 86 1 1027 636 192 92 0 chr4 57955992 57956122 -97673998 - B1_Mur4 SINE Alu -8 142 1 1 1027 832 245 67 5 chr4 57956358 57956551 -97673569 - B3 SINE B2 -11 205 1 1 1027 183 297 0 63 chr4 57956831 57956910 -97673210 - L3 LINE CR1 -2290 2199 2126 1 1027 214 112 30 0 chr4 57957115 57957154 -97672966 - PB1D7 SINE Alu -65 52 9 1 1027 493 306 35 0 chr4 57957261 57957405 -97672715 - B1F SINE Alu 0 149 1 1 1027 848 0 36 0 chr4 57957474 57957586 -97672534 + (TC)n Simple_repeat Simple_repeat 1 116 0 1 1027 754 153 23 31 chr4 57957590 57957718 -97672402 - B1_Mm SINE Alu -10 137 11 1 1027 290 247 50 38 chr4 57957716 57957796 -97672324 - B1F SINE Alu -45 104 24 1 1027 306 73 0 0 chr4 57957797 57957838 -97672282 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1027 549 148 197 39 chr4 57957858 57957985 -97672135 - B1_Mus2 SINE Alu 0 147 1 1 1027 215 152 0 0 chr4 57958587 57958620 -97671500 - PB1 SINE Alu -13 114 82 1 1027 198 0 0 0 chr4 57958628 57958650 -97671470 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1027 1200 158 204 88 chr4 57958653 57959024 -97671096 - RMER10A LTR ERVL -27 415 2 1 1027 313 211 41 27 chr4 57959025 57959098 -97671022 - PB1D10 SINE Alu -43 74 1 1 1027 702 209 14 14 chr4 57959137 57959278 -97670842 + ID_B1 SINE B4 82 222 -2 1 1027 1461 173 168 16 chr4 57959387 57959751 -97670369 + MTD LTR MaLR 1 419 0 1 1027 487 235 139 0 chr4 57959767 57959882 -97670238 - B3A SINE B2 -67 131 1 1 1027 23 33 0 0 chr4 57959971 57960001 -97670119 + GC_rich Low_complexity Low_complexity 1 30 0 1 1027 866 168 83 6 chr4 57961859 57962027 -97668093 - URR1B DNA MER1_type 0 225 45 1 1027 225 256 0 0 chr4 57962187 57962230 -97667890 - MER46C DNA MER2_type -10 328 286 1 1027 1151 202 14 5 chr4 57963870 57964084 -97666036 - B3 SINE B2 0 216 1 1 1027 220 325 120 77 chr4 57964108 57964150 -97665970 - B3A SINE B2 -5 193 3 1 1027 496 258 21 92 chr4 57964150 57964291 -97665829 - RSINE1 SINE B4 -31 134 4 1 1027 226 132 333 62 chr4 57964840 57964921 -97665199 + B1_Mur1 SINE Alu 11 113 -36 1 1027 21 0 0 0 chr4 57966202 57966223 -97663897 + AT_rich Low_complexity Low_complexity 1 21 0 1 1027 953 222 14 23 chr4 57966241 57966458 -97663662 - B3 SINE B2 0 216 2 1 1027 582 227 25 0 chr4 57967350 57967469 -97662651 + RSINE1 SINE B4 2 123 -42 1 1027 233 93 45 23 chr4 57967583 57967627 -97662493 - B1F SINE Alu -99 50 6 1 1027 185 333 0 0 chr4 57968214 57968265 -97661855 - L2b LINE L2 -5 3370 3320 1 1027 245 280 100 39 chr4 57969902 57970032 -97660088 + MIR SINE MIR 112 249 -13 1 1027 298 237 136 103 chr4 57970950 57971105 -97659015 + MIR SINE MIR 70 229 -33 1 1027 234 0 0 0 chr4 57972570 57972596 -97657524 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1027 722 168 88 0 chr4 57972602 57972727 -97657393 - B1_Mur2 SINE Alu 0 149 14 1 1027 611 26 13 0 chr4 57972810 57972887 -97657233 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1027 343 235 113 35 chr4 57972995 57973136 -97656984 + L1ME1 LINE L1 5148 5299 -847 1 1027 342 0 0 0 chr4 57973199 57973237 -97656883 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1027 941 290 52 55 chr4 57973237 57973824 -97656296 + L1ME1 LINE L1 5370 5953 -226 1 1027 3527 23 2 2 chr4 57974142 57974538 -97655582 - MTA_Mm LTR MaLR 0 396 1 1 1027 229 250 102 61 chr4 57974667 57974765 -97655355 - ORR1E LTR MaLR 0 379 278 1 1027 1131 234 107 62 chr4 57974910 57975265 -97654855 + MTEa LTR MaLR 1 371 -8 1 1027 268 256 68 23 chr4 57975286 57975374 -97654746 - ORR1E LTR MaLR -260 99 8 1 1027 369 0 0 0 chr4 57975625 57975666 -97654454 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1027 495 331 0 21 chr4 57975667 57975812 -97654308 + ID_B1 SINE B4 82 223 -1 1 1027 883 162 68 23 chr4 57976079 57976256 -97653864 + Lx9 LINE L1 7257 7441 -203 1 1027 504 72 0 0 chr4 57976482 57976551 -97653569 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1027 1171 241 24 4 chr4 57976555 57976801 -97653319 - B4 SINE B4 -20 272 22 1 1027 230 283 0 16 chr4 57976751 57976812 -97653308 - ID4 SINE ID -13 70 11 1 1027 251 258 49 88 chr4 57976963 57976988 -97653132 + MT2B2 LTR ERVL 142 162 -422 1 1027 379 345 26 17 chr4 57976988 57977103 -97653017 + PB1D10 SINE Alu 2 117 0 1 1027 600 106 0 0 chr4 57977535 57977629 -97652491 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1027 205 176 0 0 chr4 57977658 57977692 -97652428 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1027 276 211 28 0 chr4 57977692 57977763 -97652357 - RSINE1 SINE B4 0 165 93 1 1027 244 229 29 0 chr4 57977782 57977852 -97652268 - RSINE1 SINE B4 0 165 94 1 1027 369 117 0 0 chr4 57977852 57977912 -97652208 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1027 351 121 0 0 chr4 57977950 57978008 -97652112 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1027 405 109 0 0 chr4 57978046 57978110 -97652010 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1027 229 286 35 35 chr4 57979060 57979147 -97650973 + MLT1L LTR MaLR 185 271 -339 1 1027 495 271 53 15 chr4 57979193 57979324 -97650796 + RSINE1 SINE B4 11 146 -19 1 1027 333 0 0 0 chr4 57979327 57979364 -97650756 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1027 747 262 26 37 chr4 57979382 57979572 -97650548 + B3A SINE B2 11 198 0 1 1027 24 32 0 0 chr4 57979574 57979605 -97650515 + AT_rich Low_complexity Low_complexity 1 31 0 1 1027 423 0 0 0 chr4 57979663 57979710 -97650410 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1027 657 204 152 86 chr4 57980953 57981151 -97648969 - B3 SINE B2 0 216 6 1 1027 186 173 130 37 chr4 57981158 57981212 -97648908 - MIRb SINE MIR -172 96 38 1 1027 483 280 99 52 chr4 57981420 57981672 -97648448 + Charlie13b DNA Charlie 170 433 -79 1 1027 255 343 20 10 chr4 57981713 57981813 -97648307 - L2a LINE L2 -25 3401 3301 1 1027 6933 24 8 0 chr4 57981897 57982687 -97647433 + L1Md_F2 LINE L1 5785 6580 -2 1 1027 228 338 13 0 chr4 57982725 57982802 -97647318 - MIR SINE MIR -120 142 65 1 1027 302 225 56 14 chr4 57983365 57983437 -97646683 - ID4 SINE ID -8 75 1 1 1027 190 263 0 66 chr4 57984075 57984136 -97645984 - L3 LINE CR1 -2007 2482 2426 1 1027 290 87 22 0 chr4 57984240 57984286 -97645834 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1027 3349 159 30 2 chr4 57984286 57984865 -97645255 + RLTR17 LTR ERVK 4 692 0 1 1027 387 0 0 0 chr4 57984910 57984953 -97645167 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1027 663 84 0 0 chr4 57985848 57985943 -97644177 + (TCC)n Simple_repeat Simple_repeat 3 97 0 1 1027 496 177 167 9 chr4 57985959 57986073 -97644047 - RSINE1 SINE B4 -31 134 3 1 1027 722 221 92 58 chr4 57986969 57987222 -97642898 - L1MA4 LINE L1 -1718 5978 5712 1 1027 1363 213 70 48 chr4 57987223 57987578 -97642542 - ORR1D1 LTR MaLR -3 371 9 1 1027 267 297 57 40 chr4 57987585 57987710 -97642410 - L1MA4 LINE L1 -544 5747 5587 1 1027 5876 77 28 19 chr4 57987904 57988715 -97641405 - L1_Mus3 LINE L1 0 6638 5820 1 1027 201 156 0 0 chr4 57988770 57988802 -97641318 + GA-rich Low_complexity Low_complexity 2 33 0 1 1027 1322 156 38 0 chr4 57989374 57989586 -97640534 + URR1A DNA MER1_type 7 226 0 1 1027 681 289 11 27 chr4 57989922 57990107 -97640013 - B3A SINE B2 -16 182 1 1 1027 209 292 0 119 chr4 57990189 57990290 -97639830 - MER5A DNA MER1_type -98 91 3 1 1027 9623 82 5 8 chr4 57990371 57992431 -97637689 + L1_Mus3 LINE L1 4547 6599 -39 1 1027 2363 100 3 6 chr4 57992431 57992764 -97637356 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 1027 3666 65 19 16 chr4 57992764 57993492 -97636628 + IAPEz-int LTR ERVK 6 662 -5819 1 1027 2249 72 0 0 chr4 57993492 57993770 -97636350 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1027 6334 35 4 7 chr4 57993769 57994515 -97635605 + IAPEz-int LTR ERVK 5736 6479 -2 1 1027 2431 104 3 6 chr4 57994517 57994855 -97635265 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1027 22 0 0 30 chr4 57995075 57995089 -97635031 + AT_rich Low_complexity Low_complexity 1 14 0 1 1027 1389 77 6 0 chr4 57995089 57995270 -97634850 - B2_Mm1a SINE B2 -11 182 1 1 1027 22 0 0 30 chr4 57995270 57995288 -97634832 + AT_rich Low_complexity Low_complexity 1 18 0 1 1027 1409 238 141 78 chr4 57995603 57996158 -97633962 - Lx7 LINE L1 -202 7494 6905 1 1027 1879 146 23 70 chr4 57996266 57996611 -97633509 + ORR1A4 LTR MaLR 1 329 0 1 1027 215 0 67 0 chr4 57996793 57996823 -97633297 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1027 394 314 39 12 chr4 57997608 57997742 -97632378 - PB1D10 SINE Alu -11 138 1 1 1027 803 278 42 38 chr4 57997773 57998061 -97632059 + B4 SINE B4 2 290 -2 1 1027 696 268 93 16 chr4 57998650 57998843 -97631277 + ID_B1 SINE B4 2 209 -15 1 1027 322 261 167 56 chr4 57999648 57999863 -97630257 - L1ME3A LINE L1 -162 6011 5773 1 1027 249 276 85 47 chr4 58000004 58000133 -97629987 - ID_B1 SINE B4 -89 135 2 1 1027 372 211 33 0 chr4 58000158 58000248 -97629872 - L1M5 LINE L1 -642 5531 5439 2 1027 1108 244 54 70 chr4 58000693 58001080 -97629040 - MTD LTR MaLR -21 398 18 3 1027 1146 248 97 26 chr4 58001722 58002074 -97628046 + MTE2b LTR MaLR 3 379 0 4 1027 566 0 29 0 chr4 58002101 58002170 -97627950 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 5 1027 273 229 0 153 chr4 58002174 58002272 -97627848 - ID4 SINE ID 0 83 1 6 1027 611 296 85 14 chr4 58002486 58002709 -97627411 - MER2 DNA MER2_type -94 251 13 7 1027 258 43 0 0 chr4 58002832 58002878 -97627242 - L1Md_F2 LINE L1 0 6582 6537 8 1027 493 255 19 0 chr4 58002940 58003046 -97627074 - PB1D10 SINE Alu -9 108 1 9 1027 749 178 74 48 chr4 58005987 58006176 -97623944 + B2_Mm2 SINE B2 2 195 0 1 1027 782 157 171 106 chr4 58006833 58007032 -97623088 + B3 SINE B2 1 212 -4 1 1027 233 200 40 0 chr4 58007778 58007828 -97622292 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 1 1027 229 345 23 0 chr4 58007829 58007916 -97622204 + Charlie24 DNA MER1_type 2344 2432 -18 1 1027 414 0 0 0 chr4 58007922 58007968 -97622152 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1 1027 394 299 47 0 chr4 58007990 58008117 -97622003 + Tigger7 DNA MER2_type 23 155 -2336 1 1027 752 234 134 35 chr4 58008142 58008478 -97621642 + Tigger7 DNA MER2_type 220 550 0 1 1027 486 0 0 0 chr4 58008702 58008756 -97621364 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1027 836 273 68 11 chr4 58008770 58009033 -97621087 - B4 SINE B4 -13 279 2 1 1027 221 83 0 27 chr4 58009095 58009132 -97620988 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 1027 1845 113 74 10 chr4 58009132 58009428 -97620692 - Lx4A LINE L1 -14 7044 6730 1 1027 2003 95 0 0 chr4 58010052 58010314 -97619806 + L1_Mm LINE L1 5519 5780 -103 2 1027 1728 32 18 18 chr4 58010299 58010522 -97619598 + L1Md_F3 LINE L1 6343 6565 -19 2 1027 6247 79 18 0 chr4 58010522 58011349 -97618771 + L1_Mus3 LINE L1 5783 6624 -14 2 1027 240 111 0 0 chr4 58011349 58011385 -97618735 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 1027 421 293 42 65 chr4 58011847 58012015 -97618105 - B3A SINE B2 -5 211 48 2 1027 915 235 19 10 chr4 58012549 58012755 -97617365 - B3 SINE B2 -2 214 7 2 1027 379 262 86 45 chr4 58013926 58014146 -97615974 + L1M4 LINE L1 5485 5713 -465 2 1027 333 0 0 0 chr4 58014856 58014893 -97615227 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1027 321 47 0 0 chr4 58015139 58015182 -97614938 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1027 310 315 131 14 chr4 58015899 58016044 -97614076 + LTR33A_ LTR ERVL 87 248 -283 2 1027 3391 134 145 35 chr4 58016360 58017041 -97613079 + RMER6A LTR ERVK 1 756 0 3 1027 340 245 128 0 chr4 58017147 58017249 -97612871 + B1F1 SINE Alu 4 118 -31 3 1027 272 236 53 11 chr4 58017873 58017967 -97612153 - L1MD LINE L1 -763 5596 5499 3 1027 668 271 31 129 chr4 58018020 58018250 -97611870 + B4 SINE B4 3 217 -75 3 1027 774 32 0 0 chr4 58018250 58018343 -97611777 + (CAAAC)n Simple_repeat Simple_repeat 2 94 0 3 1027 668 271 31 129 chr4 58018343 58018407 -97611713 + B4 SINE B4 218 270 -22 3 1027 609 101 0 0 chr4 58018407 58018506 -97611614 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1027 668 271 31 129 chr4 58018506 58018528 -97611592 + B4 SINE B4 271 289 -3 3 1027 782 311 36 18 chr4 58018805 58019083 -97611037 + B4A SINE B4 8 290 -2 3 1027 213 227 30 15 chr4 58019297 58019364 -97610756 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1027 820 247 16 5 chr4 58019434 58019621 -97610499 + B3 SINE B2 3 191 -25 3 1027 195 42 0 0 chr4 58020445 58020469 -97609651 + (TCCA)n Simple_repeat Simple_repeat 4 27 0 3 1027 255 303 146 0 chr4 58021374 58021463 -97608657 - PB1 SINE Alu -25 102 1 4 1027 212 323 0 15 chr4 58021406 58021472 -97608648 - B4A SINE B4 -151 141 77 4 1027 1223 55 0 0 chr4 58021684 58021830 -97608290 - B1_Mm SINE Alu 0 147 2 4 1027 189 0 0 0 chr4 58022517 58022538 -97607582 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1027 1291 102 11 0 chr4 58022544 58022721 -97607399 + B2_Mm1t SINE B2 1 179 -14 4 1027 450 67 333 28 chr4 58022734 58022842 -97607278 + B2_Mm2 SINE B2 47 187 -8 4 1027 333 62 0 0 chr4 58022868 58022916 -97607204 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1027 208 322 17 17 chr4 58024478 58024595 -97605525 + GA-rich Low_complexity Low_complexity 2 118 0 4 1027 281 308 83 0 chr4 58024702 58024822 -97605298 + MER5A1 DNA MER1_type 36 165 -1 4 1027 38637 31 0 0 chr4 58024857 58031068 -97599052 - L1Md_T LINE L1 0 6585 278 4 1027 649 222 59 20 chr4 58031095 58031263 -97598857 + MER5A DNA MER1_type 21 189 0 5 1027 243 61 0 0 chr4 58031290 58031323 -97598797 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1027 283 213 0 16 chr4 58031323 58031395 -97598725 - BC1_Mm scRNA scRNA -12 71 1 5 1027 206 118 0 0 chr4 58031509 58031543 -97598577 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1027 915 129 63 21 chr4 58031543 58031686 -97598434 - B1_Mur3 SINE Alu 0 149 1 5 1027 904 232 28 24 chr4 58031747 58031959 -97598161 + B3 SINE B2 1 213 -3 5 1027 403 263 67 55 chr4 58033243 58033408 -97596712 + RMER1B Other Other 226 392 -674 5 1027 937 259 96 24 chr4 58033406 58033655 -97596465 + RMER1C Other Other 1058 1324 -18 5 1027 4480 70 25 0 chr4 58034034 58034604 -97595516 + MT2B2 LTR ERVL 1 584 0 5 1027 272 48 0 23 chr4 58035804 58035847 -97594273 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1027 1098 82 0 40 chr4 58035847 58035999 -97594121 - B1_Mus1 SINE Alu 0 148 3 5 1027 1244 34 7 0 chr4 58036347 58036493 -97593627 + B1_Mm SINE Alu 1 147 0 6 1027 425 209 22 0 chr4 58036502 58036593 -97593527 - B3 SINE B2 -5 211 119 6 1027 280 274 60 0 chr4 58036718 58036802 -97593318 - ORR1E LTR MaLR -269 90 2 6 1027 317 283 65 0 chr4 58037295 58037387 -97592733 - MER58A DNA MER1_type -126 98 1 6 1027 547 231 71 54 chr4 58037879 58038003 -97592117 - L1MA4 LINE L1 -375 5925 5801 6 1027 5350 58 1 1 chr4 58038003 58038659 -97591461 + L1_Mus1 LINE L1 5912 6567 0 6 1027 547 253 80 46 chr4 58038659 58038804 -97591316 - L1MA4 LINE L1 -500 5800 5605 6 1027 1125 94 0 0 chr4 58038905 58039065 -97591055 + (TTCCC)n Simple_repeat Simple_repeat 5 164 0 6 1027 671 149 21 10 chr4 58039065 58039245 -97590875 + CT-rich Low_complexity Low_complexity 1 181 0 6 1027 681 176 0 0 chr4 58039249 58039368 -97590752 - B1_Mur3 SINE Alu 0 149 31 6 1027 681 13 0 0 chr4 58039378 58039456 -97590664 + (TTTCC)n Simple_repeat Simple_repeat 3 80 0 6 1027 185 316 37 25 chr4 58040264 58040345 -97589775 + MIRc SINE MIR 184 265 -3 7 1027 8213 43 1 2 chr4 58040725 58042075 -97588045 - L1Md_F2 LINE L1 -1 6581 5234 7 1027 452 200 15 20 chr4 58042076 58042198 -97587922 + MTEb LTR MaLR 214 339 -40 7 1027 235 215 138 12 chr4 58042233 58042313 -97587807 - RLTR13D3 LTR ERVK -42 1072 983 7 1027 216 222 127 0 chr4 58043210 58043273 -97586847 - ID2 SINE ID -8 75 5 7 1027 1589 145 124 18 chr4 58043369 58043707 -97586413 + ORR1D1 LTR MaLR 1 374 0 7 1027 450 0 0 0 chr4 58044386 58044436 -97585684 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1027 522 254 151 103 chr4 58044997 58045269 -97584851 - B4A SINE B4 0 292 8 7 1027 1074 180 43 5 chr4 58046180 58046387 -97583733 - B3 SINE B2 0 216 2 7 1027 401 243 123 33 chr4 58047966 58048152 -97581968 + ORR1D2 LTR MaLR 110 304 -55 7 1027 231 204 0 0 chr4 58049357 58049406 -97580714 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1027 987 260 54 25 chr4 58049587 58049863 -97580257 + B4 SINE B4 8 291 -1 8 1027 414 0 0 0 chr4 58049876 58049922 -97580198 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1027 422 236 76 30 chr4 58051835 58051966 -97578154 - B1F1 SINE Alu -10 139 3 8 1027 22 35 0 0 chr4 58052870 58052899 -97577221 + AT_rich Low_complexity Low_complexity 1 29 0 8 1027 551 268 44 11 chr4 58053436 58053617 -97576503 - B3A SINE B2 -2 196 10 8 1027 237 193 35 0 chr4 58053714 58053771 -97576349 - tRNA-Ala-GCY_ tRNA tRNA -14 61 3 8 1027 251 333 67 72 chr4 58054173 58054367 -97575753 + B4 SINE B4 99 291 -1 8 1027 199 151 19 19 chr4 58055065 58055077 -97575043 + polypyrimidine Low_complexity Low_complexity 43 54 0 8 1027 1146 96 0 0 chr4 58055077 58055243 -97574877 + (TTCC)n Simple_repeat Simple_repeat 4 169 0 8 1027 199 151 19 19 chr4 58055243 58055284 -97574836 + CT-rich Low_complexity Low_complexity 2 42 0 9 1027 806 55 0 9 chr4 58056264 58056373 -97573747 + (TTCC)n Simple_repeat Simple_repeat 3 110 0 9 1027 438 283 9 0 chr4 58056373 58056479 -97573641 - PB1D9 SINE Alu -12 108 2 9 1027 1427 121 5 5 chr4 58057403 58057611 -97572509 + B3 SINE B2 1 208 -8 9 1027 197 108 27 0 chr4 58057671 58057708 -97572412 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1027 534 163 11 0 chr4 58058730 58058822 -97571298 - B3 SINE B2 -123 93 1 9 1027 202 261 67 11 chr4 58058837 58058926 -97571194 + L2 LINE L2 2832 2925 -494 9 1027 303 274 19 47 chr4 58059992 58060099 -97570021 + MER5A1 DNA MER1_type 41 144 -22 9 1027 517 207 51 15 chr4 58060304 58060441 -97569679 + RSINE1 SINE B4 3 144 -21 9 1027 237 278 19 0 chr4 58061394 58061448 -97568672 + polypyrimidine Low_complexity Low_complexity 3 57 0 9 1027 433 218 107 8 chr4 58061452 58061623 -97568497 - L1MA9 LINE L1 -181 6131 5937 1 1027 188 317 0 0 chr4 58062563 58062623 -97567497 + L2a LINE L2 3367 3426 0 1 1027 1245 211 28 24 chr4 58062991 58063239 -97566881 - Lx6 LINE L1 0 7460 7212 1 1027 279 0 0 0 chr4 58064171 58064202 -97565918 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1027 215 287 21 11 chr4 58064253 58064348 -97565772 - MIRb SINE MIR -63 205 110 1 128 536 294 73 84 chr4 58064737 58064924 -97565196 - ORR1E LTR MaLR -7 352 163 1 1028 624 14 0 0 chr4 58064924 58064997 -97565123 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 1028 536 294 73 84 chr4 58064997 58065165 -97564955 - ORR1E LTR MaLR -197 162 1 1 1028 439 300 13 26 chr4 58065165 58065315 -97564805 + MER5A DNA MER1_type 35 182 -7 1 1028 937 239 24 14 chr4 58065641 58065853 -97564267 + B3 SINE B2 1 214 -2 1 1028 425 266 69 23 chr4 58068006 58068179 -97561941 - MER53 DNA hAT -8 185 5 1 1028 559 256 15 0 chr4 58068282 58068415 -97561705 + RSINE1 SINE B4 8 142 -23 1 1028 922 194 21 10 chr4 58068721 58068914 -97561206 + B2_Mm2 SINE B2 1 195 0 1 1028 222 91 0 0 chr4 58070595 58070628 -97559492 + (TTC)n Simple_repeat Simple_repeat 2 34 0 1 1028 1039 63 33 53 chr4 58070629 58070779 -97559341 - B1_Mus1 SINE Alu 0 148 2 1 1028 208 93 45 23 chr4 58071713 58071757 -97558363 + CT-rich Low_complexity Low_complexity 5 49 0 1 1028 586 264 89 30 chr4 58071803 58072006 -97558114 - B4A SINE B4 -77 215 1 1 1028 476 264 143 12 chr4 58072096 58072257 -97557863 - B3A SINE B2 -16 182 1 1 1028 324 70 0 0 chr4 58072273 58072316 -97557804 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 1 1028 1054 96 45 0 chr4 58073137 58073294 -97556826 - B2_Mm2 SINE B2 -31 164 1 1 1028 1299 225 129 8 chr4 58073744 58074116 -97556004 - MTD LTR MaLR 0 419 3 1 1028 21 57 0 0 chr4 58074163 58074198 -97555922 + AT_rich Low_complexity Low_complexity 1 35 0 1 1028 621 40 0 0 chr4 58074369 58074445 -97555675 + (TCC)n Simple_repeat Simple_repeat 1 76 0 1 1028 1061 214 23 41 chr4 58074897 58075116 -97555004 - B3 SINE B2 -1 215 1 1 1028 1958 152 43 53 chr4 58075884 58076281 -97553839 + ORR1B1 LTR MaLR 1 393 -1 1 1028 569 153 0 30 chr4 58076399 58076500 -97553620 - B3A SINE B2 -99 99 2 1 1028 488 207 98 9 chr4 58076576 58076688 -97553432 - PB1 SINE Alu -5 122 1 1 1028 1052 86 29 0 chr4 58076822 58076962 -97553158 - B1_Mus1 SINE Alu -2 146 3 1 1028 371 261 13 59 chr4 58078266 58078398 -97551722 - ID_B1 SINE B4 -159 133 2 1 1028 317 298 75 0 chr4 58078407 58078501 -97551619 - PB1D10 SINE Alu -16 101 1 1 1028 1274 104 16 11 chr4 58078681 58078865 -97551255 - B2_Mm2 SINE B2 -9 186 2 1 1028 609 218 241 0 chr4 58078977 58079147 -97550973 - B3 SINE B2 -5 211 1 1 1028 231 309 9 70 chr4 58080024 58080139 -97549981 - MIR SINE MIR -28 234 127 1 1028 1068 231 30 57 chr4 58084518 58084817 -97545303 - B4 SINE B4 0 292 2 1 1028 962 224 55 0 chr4 58085141 58085342 -97544778 + B3 SINE B2 1 212 -4 1 1028 21 0 0 0 chr4 58086311 58086332 -97543788 + AT_rich Low_complexity Low_complexity 1 21 0 1 1028 490 303 95 21 chr4 58086473 58086556 -97543564 - B4 SINE B4 0 292 200 1 1028 180 0 0 0 chr4 58086556 58086576 -97543544 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1028 490 303 95 21 chr4 58086576 58086681 -97543439 - B4 SINE B4 -93 199 91 1 1028 259 333 23 0 chr4 58088701 58088788 -97541332 + MER21B LTR ERV1 1 89 -774 1 1028 288 0 0 0 chr4 58089736 58089768 -97540352 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1028 979 249 40 26 chr4 58090074 58090346 -97539774 + Lx8 LINE L1 7192 7467 -6 1 1028 269 222 23 156 chr4 58090245 58090373 -97539747 + RMER1C Other Other 1227 1337 -5 1 1028 308 188 72 0 chr4 58090844 58090913 -97539207 + L1MEd LINE L1 70 143 -5976 1 1028 2491 151 2 5 chr4 58091383 58091797 -97538323 - MTC LTR MaLR -8 413 1 1 1028 1105 265 142 22 chr4 58092228 58092679 -97537441 - Lx9 LINE L1 -19 7625 7121 1 1028 270 0 0 0 chr4 58093241 58093271 -97536849 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1028 926 281 51 4 chr4 58093288 58093563 -97536557 - B4A SINE B4 -3 289 2 1 1028 369 0 0 0 chr4 58093648 58093689 -97536431 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1028 23 33 0 0 chr4 58093699 58093729 -97536391 + AT_rich Low_complexity Low_complexity 1 30 0 1 1028 1383 118 13 71 chr4 58094653 58094891 -97535229 + URR1B DNA MER1_type 1 224 -1 1 1028 183 42 0 0 chr4 58095212 58095236 -97534884 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1028 286 128 43 0 chr4 58096241 58096288 -97533832 - RSINE1 SINE B4 -35 130 82 1 1028 557 217 158 7 chr4 58097123 58097262 -97532858 + B3A SINE B2 14 173 -25 1 1028 596 222 58 34 chr4 58098091 58098291 -97531829 - B3A SINE B2 -7 209 2 1 1028 283 60 40 0 chr4 58098297 58098347 -97531773 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1028 555 300 0 26 chr4 58098359 58098513 -97531607 - B3A SINE B2 -48 150 1 1 1028 447 176 59 0 chr4 58098712 58098797 -97531323 + RSINE1 SINE B4 36 125 -40 1 1028 2368 52 0 0 chr4 58100189 58100475 -97529645 + L1Md_F2 LINE L1 6285 6570 -12 1 1028 258 32 0 0 chr4 58101470 58101501 -97528619 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1028 337 254 125 0 chr4 58101519 58101664 -97528456 - L2a LINE L2 -44 3382 3233 1 1028 851 139 51 0 chr4 58102627 58102764 -97527356 - B1_Mus1 SINE Alu 0 148 5 1 1028 860 222 88 0 chr4 58102965 58103159 -97526961 + B3 SINE B2 1 211 -5 1 1028 24 0 0 0 chr4 58103213 58103237 -97526883 + AT_rich Low_complexity Low_complexity 1 24 0 1 1028 606 122 0 0 chr4 58103880 58103978 -97526142 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 1028 838 200 0 96 chr4 58103978 58104177 -97525943 - B3A SINE B2 -16 182 3 1 1028 25 0 0 0 chr4 58104499 58104524 -97525596 + AT_rich Low_complexity Low_complexity 1 25 0 1 1028 245 281 16 0 chr4 58105432 58105496 -97524624 - ID4 SINE ID -10 73 9 1 1028 408 97 0 0 chr4 58106521 58106583 -97523537 + (CAAG)n Simple_repeat Simple_repeat 1 62 0 1 1028 237 33 0 0 chr4 58107122 58107152 -97522968 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1028 541 297 58 55 chr4 58107447 58107721 -97522399 + MLT1A0 LTR MaLR 1 275 -90 1 1028 297 75 0 0 chr4 58107911 58107951 -97522169 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1028 333 0 0 0 chr4 58109486 58109523 -97520597 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1028 408 40 0 0 chr4 58109523 58109572 -97520548 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1028 323 269 9 0 chr4 58109973 58110081 -97520039 + L1MA7 LINE L1 6173 6281 -10 1 1028 22 35 0 0 chr4 58111268 58111297 -97518823 + AT_rich Low_complexity Low_complexity 1 29 0 1 1028 252 0 0 0 chr4 58111304 58111332 -97518788 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1028 843 302 13 59 chr4 58111864 58111901 -97518219 - B4 SINE B4 0 292 268 1 1028 210 118 0 0 chr4 58111901 58111935 -97518185 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1028 843 302 13 59 chr4 58111935 58112203 -97517917 - B4 SINE B4 -25 267 1 1 1028 928 238 27 27 chr4 58112311 58112531 -97517589 + ID_B1 SINE B4 1 220 -4 1 1028 502 28 28 0 chr4 58112531 58112603 -97517517 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1028 246 81 0 0 chr4 58113276 58113313 -97516807 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1028 498 17 0 0 chr4 58113908 58113967 -97516153 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1028 1168 85 0 0 chr4 58113969 58114110 -97516010 - B1_Mus1 SINE Alu -6 142 2 1 1028 785 137 91 16 chr4 58114233 58114402 -97515718 - B3 SINE B2 -11 182 2 1 1028 1446 249 84 8 chr4 58114882 58115251 -97514869 + MTD LTR MaLR 18 414 -5 1 1028 279 202 0 0 chr4 58116823 58116902 -97513218 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1028 234 105 0 0 chr4 58116970 58117008 -97513112 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1028 930 58 0 0 chr4 58118037 58118158 -97511962 + (TCCA)n Simple_repeat Simple_repeat 3 123 0 1 1028 209 149 43 0 chr4 58118159 58118206 -97511914 + C-rich Low_complexity Low_complexity 4 52 0 1 1028 772 212 0 0 chr4 58118237 58118369 -97511751 - B1F2 SINE Alu -5 144 13 1 1028 536 279 0 58 chr4 58118369 58118388 -97511732 - ID_B1 SINE B4 0 219 78 1 1028 253 346 94 8 chr4 58119467 58119595 -97510525 + MER5B DNA MER1_type 19 157 -21 1 1028 251 276 0 0 chr4 58119880 58119938 -97510182 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1028 24 32 0 0 chr4 58120021 58120052 -97510068 + AT_rich Low_complexity Low_complexity 1 31 0 1 1028 523 269 24 77 chr4 58120738 58120879 -97509241 + RSINE1 SINE B4 6 145 -20 1 1028 207 100 0 0 chr4 58120879 58120909 -97509211 + (CATG)n Simple_repeat Simple_repeat 1 30 0 1 1028 523 269 24 77 chr4 58120909 58120936 -97509184 + RSINE1 SINE B4 146 165 0 1 1028 217 202 32 63 chr4 58122049 58122144 -97507976 + A-rich Low_complexity Low_complexity 3 94 0 1 1028 393 141 0 0 chr4 58123195 58123266 -97506854 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1028 258 292 0 0 chr4 58123287 58123352 -97506768 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1028 1420 211 20 34 chr4 58123355 58123650 -97506470 - B4A SINE B4 0 292 2 1 1028 1365 179 9 0 chr4 58125421 58125645 -97504475 - URR1A DNA MER1_type 0 226 1 1 1028 744 134 146 23 chr4 58125691 58125821 -97504299 - B1_Mur3 SINE Alu -2 147 2 1 1028 283 311 88 62 chr4 58125822 58126014 -97504106 + MER34 LTR ERV1 43 239 -303 2 1028 465 103 0 0 chr4 58126096 58126164 -97503956 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1028 369 0 0 0 chr4 58127599 58127640 -97502480 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1028 386 198 151 14 chr4 58127693 58127850 -97502270 + L1MB4 LINE L1 5988 6174 0 2 1028 429 20 0 0 chr4 58128104 58128154 -97501966 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1028 657 201 26 77 chr4 58128166 58128322 -97501798 - B3A SINE B2 -47 151 4 2 1028 22 0 0 0 chr4 58128952 58128974 -97501146 + AT_rich Low_complexity Low_complexity 1 22 0 2 1028 21 0 0 0 chr4 58129836 58129857 -97500263 + AT_rich Low_complexity Low_complexity 1 21 0 2 1028 21 36 0 0 chr4 58130669 58130697 -97499423 + AT_rich Low_complexity Low_complexity 1 28 0 2 1028 506 307 86 86 chr4 58131138 58131580 -97498540 + L2 LINE L2 35 476 -2943 2 1028 223 360 35 35 chr4 58131822 58131966 -97498154 + L2a LINE L2 3184 3327 -99 2 1028 518 250 29 0 chr4 58132571 58132674 -97497446 + ID_B1 SINE B4 6 111 -113 2 1028 833 162 7 20 chr4 58132674 58132825 -97497295 - URR1A DNA MER1_type 0 226 78 2 1028 391 266 35 65 chr4 58132675 58132844 -97497276 + CYRA11_Mm Unknown Y-chromosome 172 335 -282 2 1028 538 208 0 0 chr4 58132868 58132969 -97497151 + ID_B1 SINE B4 115 215 -9 2 1028 306 0 0 0 chr4 58133079 58133113 -97497007 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1028 257 200 21 32 chr4 58133604 58133697 -97496423 + C-rich Low_complexity Low_complexity 2 93 0 2 1028 237 149 20 41 chr4 58133722 58133771 -97496349 - BC1_Mm scRNA scRNA -103 49 2 2 1028 409 303 97 87 chr4 58135278 58135827 -97494293 + MLT2B3 LTR ERVL 1 554 0 2 1028 225 222 25 89 chr4 58137438 58137460 -97492660 + Charlie24 DNA MER1_type 1882 1898 -552 2 1028 1197 250 30 119 chr4 58137460 58137855 -97492265 + MTE2a LTR MaLR 3 362 -17 2 1028 760 267 69 5 chr4 58139249 58139437 -97490683 + B3 SINE B2 1 200 -16 2 1028 234 208 21 0 chr4 58139437 58139485 -97490635 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 2 1028 591 209 108 0 chr4 58139884 58140013 -97490107 - B1F SINE Alu -1 148 6 2 1028 516 248 69 28 chr4 58140013 58140029 -97490091 - ID_B1 SINE B4 -1 223 73 2 1028 287 93 0 0 chr4 58140553 58140596 -97489524 - L1_Mur1 LINE L1 -2158 3728 3686 2 1028 4018 83 17 2 chr4 58140598 58141119 -97489001 + L1_Mus3 LINE L1 6105 6633 -5 2 1028 274 256 25 13 chr4 58142370 58142449 -97487671 - ID4 SINE ID -2 81 2 2 1028 228 327 26 70 chr4 58142633 58142748 -97487372 + Lx8 LINE L1 7218 7327 -146 2 1028 416 340 73 58 chr4 58142761 58142914 -97487206 - MLT1D LTR MaLR -168 337 186 2 1028 210 37 0 0 chr4 58142914 58142941 -97487179 + (CTGGGG)n Simple_repeat Simple_repeat 5 31 0 2 1028 416 340 73 58 chr4 58142941 58143115 -97487005 - MLT1D LTR MaLR -320 185 5 2 1028 426 39 0 0 chr4 58143644 58143696 -97486424 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1028 243 365 9 19 chr4 58143803 58143909 -97486211 + L2 LINE L2 1308 1412 -2007 2 1028 529 263 58 0 chr4 58144087 58144224 -97485896 + MLT1D LTR MaLR 23 167 -338 2 1028 1682 179 29 73 chr4 58144365 58144741 -97485379 + ORR1A4 LTR MaLR 1 364 -14 2 1028 387 0 0 0 chr4 58147801 58147844 -97482276 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1028 927 255 42 5 chr4 58148700 58148913 -97481207 - ID_B1 SINE B4 -2 222 2 2 1028 674 318 30 10 chr4 58149275 58149472 -97480648 - ID_B1 SINE B4 -22 202 2 2 1028 725 245 14 0 chr4 58150058 58150197 -97479923 + RSINE1 SINE B4 5 145 -20 2 1028 312 27 0 0 chr4 58150212 58150249 -97479871 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1028 262 331 5 53 chr4 58151203 58151391 -97478729 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 2 1028 258 381 17 26 chr4 58152527 58152643 -97477477 + MLT1J LTR MaLR 319 433 -79 2 1028 235 390 28 7 chr4 58154572 58154714 -97475406 - MER104 DNA Tc2 -36 145 1 2 1028 325 338 172 46 chr4 58155177 58155543 -97474577 + LTR33C LTR ERVL 13 422 -207 2 1028 252 240 0 115 chr4 58157063 58157176 -97472944 + MER53 DNA hAT 1 100 -93 2 1028 897 99 151 7 chr4 58157651 58157803 -97472317 - URR1A DNA MER1_type -46 180 7 2 1028 259 242 103 29 chr4 58158545 58158613 -97471507 - ID4 SINE ID -9 74 2 2 1028 854 172 14 7 chr4 58158688 58158834 -97471286 + B1_Mus2 SINE Alu 1 147 0 2 1028 240 122 43 32 chr4 58158834 58158927 -97471193 + (CAAA)n Simple_repeat Simple_repeat 3 96 0 2 1028 1032 221 11 5 chr4 58159690 58159881 -97470239 - B3 SINE B2 -24 192 1 2 1028 229 265 137 0 chr4 58160367 58160469 -97469651 + MIR3 SINE MIR 66 183 -93 2 1028 536 189 0 0 chr4 58161465 58161555 -97468565 - B3 SINE B2 -126 90 1 2 1028 987 208 28 60 chr4 58163979 58164194 -97465926 - B3 SINE B2 -4 212 5 2 1028 685 240 8 0 chr4 58164337 58164466 -97465654 - B1_Mur1 SINE Alu -18 131 2 2 1028 552 15 0 0 chr4 58164482 58164547 -97465573 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1028 765 61 0 0 chr4 58164628 58164727 -97465393 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2 1028 1160 58 0 7 chr4 58164727 58164867 -97465253 - B1_Mus1 SINE Alu -8 140 2 2 1028 3250 71 5 0 chr4 58164867 58165262 -97464858 - MTB LTR MaLR -3 397 1 2 1028 4068 162 61 55 chr4 58165263 58166169 -97463951 + RLTR25B LTR ERVK 15 1028 0 2 1028 1146 127 57 21 chr4 58166177 58166370 -97463750 - RLTR25B LTR ERVK -508 520 321 2 1028 674 256 96 11 chr4 58166369 58166547 -97463573 - B4 SINE B4 -95 197 5 2 1028 952 289 151 49 chr4 58167572 58168286 -97461834 + Lx8 LINE L1 5076 5903 -1570 2 1028 245 243 115 10 chr4 58168794 58168898 -97461222 + L1MD1 LINE L1 271 385 -6248 2 1028 393 306 145 4 chr4 58169332 58169594 -97460526 + L1MD1 LINE L1 3599 3897 -2640 2 1028 255 295 108 57 chr4 58169633 58169791 -97460329 + L1MC LINE L1 3681 3846 -2300 2 1028 917 282 144 35 chr4 58169812 58170505 -97459615 + L1MD1 LINE L1 4595 5363 -1174 2 1028 253 219 40 27 chr4 58170664 58170739 -97459381 + L1MA5A LINE L1 4942 5017 -1126 2 1028 1155 266 142 31 chr4 58170919 58171498 -97458622 + L1MA5A LINE L1 5257 5899 -398 2 1028 426 69 0 0 chr4 58171525 58171583 -97458537 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1028 369 0 0 0 chr4 58171583 58171623 -97458497 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1028 288 336 111 0 chr4 58171927 58172171 -97457949 + L1MD1 LINE L1 5648 5918 -715 2 1028 392 346 19 0 chr4 58172228 58172335 -97457785 - PB1D10 SINE Alu -7 110 2 2 1028 412 277 74 9 chr4 58172349 58172524 -97457596 + L1MD1 LINE L1 5929 6112 -638 2 1028 1034 243 84 34 chr4 58172600 58172976 -97457144 + MTD LTR MaLR 18 405 -14 2 1028 907 44 0 0 chr4 58173098 58173211 -97456909 - L1_Mm LINE L1 -2120 3763 3651 2 1028 2763 64 11 0 chr4 58173211 58173572 -97456548 + L1Md_F2 LINE L1 6217 6581 -1 2 1028 545 229 82 66 chr4 58173583 58173779 -97456341 + L1MD1 LINE L1 6248 6446 -187 2 1028 631 224 72 35 chr4 58173816 58174002 -97456118 + ORR1D1 LTR MaLR 7 190 -177 2 1028 189 0 0 0 chr4 58174015 58174036 -97456084 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1028 456 19 0 0 chr4 58174681 58174734 -97455386 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1028 291 151 0 52 chr4 58174759 58174836 -97455284 + GA-rich Low_complexity Low_complexity 2 74 0 2 1028 511 165 0 0 chr4 58175552 58175643 -97454477 - RMER15 LTR ERVL -53 522 432 2 1028 1574 206 62 11 chr4 58176633 58176767 -97453353 - MTE2a LTR MaLR -3 376 241 2 1028 261 0 0 0 chr4 58176767 58176796 -97453324 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 2 1028 1574 206 62 11 chr4 58176796 58177019 -97453101 - MTE2a LTR MaLR -139 240 1 2 1028 1540 57 0 10 chr4 58177105 58177300 -97452820 + B2_Mm1a SINE B2 1 193 0 2 1028 334 284 106 19 chr4 58178849 58178953 -97451167 + ORR1E LTR MaLR 1 113 -246 2 1028 498 108 0 0 chr4 58178977 58179051 -97451069 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1028 1236 233 36 62 chr4 58180703 58181060 -97449060 - MTD LTR MaLR -4 415 68 2 1028 578 297 10 15 chr4 58181431 58181636 -97448484 + Charlie2b DNA MER1_type 1765 1968 -814 2 1028 697 284 43 102 chr4 58182407 58182799 -97447321 + ORR1D2 LTR MaLR 1 369 -1 2 1028 441 0 0 0 chr4 58183196 58183245 -97446875 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1028 405 0 0 0 chr4 58183245 58183290 -97446830 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1028 1006 303 24 42 chr4 58183896 58184275 -97445845 + MTE2b LTR MaLR 1 372 -7 2 1028 236 276 12 62 chr4 58184809 58184890 -97445230 - MADE2 DNA Mariner -3 77 1 2 1028 193 321 78 34 chr4 58185032 58185149 -97444971 + MIR SINE MIR 23 143 -65 2 1028 3987 69 17 6 chr4 58185441 58185978 -97444142 - L1_Mus3 LINE L1 -6 6632 6090 2 1028 291 280 53 21 chr4 58186277 58186372 -97443748 + MIR3 SINE MIR 90 187 -21 2 1028 684 36 0 0 chr4 58186683 58186766 -97443354 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1028 243 342 143 67 chr4 58188436 58188778 -97441342 + MLT1H LTR MaLR 182 549 0 2 1028 216 0 0 0 chr4 58190936 58190960 -97439160 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1028 243 291 103 11 chr4 58190960 58191047 -97439073 - RSINE1 SINE B4 -69 96 2 2 1028 272 388 71 18 chr4 58191057 58191225 -97438895 - MIR SINE MIR -46 216 40 2 1028 348 184 0 0 chr4 58192185 58192283 -97437837 + GA-rich Low_complexity Low_complexity 1 98 0 2 1028 471 128 0 0 chr4 58193887 58193973 -97436147 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1028 1613 27 27 0 chr4 58194472 58194658 -97435462 + B2_Mm1a SINE B2 2 192 -1 2 1028 252 0 0 0 chr4 58194975 58195003 -97435117 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1028 297 131 0 0 chr4 58195700 58195761 -97434359 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 128 415 266 104 27 chr4 58195764 58195975 -97434145 + L1MC5 LINE L1 6700 6961 -1081 3 1029 357 24 0 0 chr4 58196051 58196093 -97434027 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1029 430 246 199 38 chr4 58196954 58197140 -97432980 + B3 SINE B2 1 216 0 3 1029 461 250 41 24 chr4 58197315 58197438 -97432682 + B3A SINE B2 20 144 -54 3 1029 467 190 31 13 chr4 58197393 58197519 -97432601 + B1_Mur1 SINE Alu 20 149 0 3 1029 252 0 0 0 chr4 58198724 58198752 -97431368 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1029 241 189 20 50 chr4 58198862 58198962 -97431158 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 1029 298 315 11 0 chr4 58199148 58199240 -97430880 - RSINE1 SINE B4 -70 95 3 3 1029 1152 75 0 0 chr4 58199375 58199521 -97430599 + B1_Mm SINE Alu 2 147 0 3 1029 216 158 0 0 chr4 58199646 58199684 -97430436 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 3 1029 254 180 16 0 chr4 58199836 58199897 -97430223 + GA-rich Low_complexity Low_complexity 1 62 0 3 1029 1145 90 7 0 chr4 58199996 58200141 -97429979 + B1_Mus1 SINE Alu 2 147 -1 3 1029 363 23 0 0 chr4 58200191 58200235 -97429885 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1029 3950 26 2 4 chr4 58200947 58201406 -97428714 - L1Md_F2 LINE L1 0 6582 6125 3 1029 674 202 18 71 chr4 58202763 58202933 -97427187 + RSINE1 SINE B4 5 165 0 3 1029 4931 110 11 16 chr4 58203232 58203974 -97426146 + Lx LINE L1 5917 6654 0 3 1029 26 30 0 0 chr4 58204077 58204110 -97426010 + AT_rich Low_complexity Low_complexity 1 33 0 3 1029 405 0 0 0 chr4 58204583 58204628 -97425492 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1029 1302 92 5 21 chr4 58205608 58205796 -97424324 + B2_Mm2 SINE B2 2 186 -9 3 1029 1171 35 7 40 chr4 58206826 58206977 -97423143 + B1_Mm SINE Alu 2 147 0 3 1029 375 23 0 0 chr4 58206977 58207021 -97423099 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 3 1029 254 278 10 118 chr4 58207200 58207302 -97422818 + RSINE1 SINE B4 75 165 0 3 1029 189 306 0 0 chr4 58207303 58207437 -97422683 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 1029 318 256 0 23 chr4 58207463 58207551 -97422569 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1029 303 130 0 0 chr4 58208426 58208472 -97421648 + MTE2b LTR MaLR 16 61 -318 3 1029 1293 172 162 46 chr4 58208474 58208802 -97421318 + ORR1D1 LTR MaLR 1 366 -8 3 1029 943 291 76 10 chr4 58208808 58209096 -97421024 + MTE2b LTR MaLR 73 379 0 3 1029 232 208 39 77 chr4 58209472 58209550 -97420570 - ID4 SINE ID -4 79 5 3 1029 377 204 641 0 chr4 58211228 58211356 -97418764 + B3A SINE B2 1 210 -6 3 1029 522 261 46 0 chr4 58211593 58211723 -97418397 - ID_B1 SINE B4 -5 219 84 3 1029 695 242 25 59 chr4 58212182 58212340 -97417780 + B3A SINE B2 1 158 -40 3 1029 4308 161 97 24 chr4 58212340 58213186 -97416934 + RMER13B LTR ERVK 1 908 0 3 1029 695 242 25 59 chr4 58213186 58213229 -97416891 + B3A SINE B2 159 195 -3 3 1029 1377 91 0 21 chr4 58214039 58214230 -97415890 + B2_Mm2 SINE B2 2 188 -7 3 1029 315 0 0 0 chr4 58214251 58214286 -97415834 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1029 277 340 29 10 chr4 58215304 58215408 -97414712 + PB1 SINE Alu 9 114 -13 3 1029 319 292 10 20 chr4 58215671 58215769 -97414351 + PB1D10 SINE Alu 21 117 0 3 1029 198 0 0 0 chr4 58215793 58215815 -97414305 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1029 256 333 0 0 chr4 58215816 58215894 -97414226 + ID2 SINE ID 5 82 -1 3 1029 1102 211 0 0 chr4 58216515 58216719 -97413401 - B3 SINE B2 -7 209 6 3 1029 1962 140 89 3 chr4 58217085 58217422 -97412698 + Lx LINE L1 6283 6648 -6 3 1029 275 237 129 81 chr4 58217449 58217573 -97412547 + L1M5 LINE L1 5543 5672 -452 3 1029 359 228 20 153 chr4 58217649 58217799 -97412321 + B3 SINE B2 1 130 -86 3 1029 429 254 37 15 chr4 58218163 58218299 -97411821 + ID_B1 SINE B4 77 215 -9 3 1029 296 238 36 0 chr4 58219547 58219631 -97410489 + CT-rich Low_complexity Low_complexity 2 88 0 3 1029 363 136 0 0 chr4 58220280 58220339 -97409781 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1029 298 235 193 0 chr4 58220914 58221033 -97409087 + MIR SINE MIR 113 254 -8 3 1029 322 216 126 58 chr4 58221569 58221672 -97408448 + PB1D10 SINE Alu 6 115 -2 3 1029 737 255 135 15 chr4 58221684 58221943 -97408177 + B4A SINE B4 2 291 -1 3 1029 210 91 0 0 chr4 58222071 58222104 -97408016 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1029 422 188 10 0 chr4 58222369 58222470 -97407650 + CT-rich Low_complexity Low_complexity 2 103 0 3 1029 981 140 7 0 chr4 58222478 58222614 -97407506 - B1_Mur4 SINE Alu -13 137 1 3 1029 705 12 0 0 chr4 58223000 58223082 -97407038 + (TC)n Simple_repeat Simple_repeat 2 83 0 3 1029 279 0 0 0 chr4 58223082 58223112 -97407008 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1029 494 293 13 20 chr4 58224171 58224321 -97405799 - B1F SINE Alu 0 149 1 3 1029 378 308 37 30 chr4 58225645 58225809 -97404311 - L1MD2 LINE L1 -348 6011 5847 3 1029 422 256 52 22 chr4 58225799 58225935 -97404185 - L1M5 LINE L1 -483 5696 5557 3 1029 233 340 58 39 chr4 58226017 58226173 -97403947 - RMER15 LTR ERVL -11 564 406 3 1029 334 311 56 6 chr4 58226505 58226667 -97403453 - L1MD2 LINE L1 -6368 179 10 3 1029 315 0 0 0 chr4 58227057 58227092 -97403028 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1029 531 268 0 24 chr4 58227100 58227226 -97402894 - ID_B1 SINE B4 -2 222 100 3 1029 1873 154 118 6 chr4 58227230 58227577 -97402543 - ORR1B1 LTR MaLR -8 386 1 3 1029 344 322 23 0 chr4 58227577 58227661 -97402459 - ID_B1 SINE B4 -120 104 19 3 1029 793 249 15 40 chr4 58227676 58227877 -97402243 - B3A SINE B2 -2 196 1 3 1029 799 212 26 72 chr4 58228582 58228775 -97401345 - B3A SINE B2 -14 184 1 3 1029 206 0 69 0 chr4 58228888 58228917 -97401203 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1029 4277 122 148 32 chr4 58229736 58230139 -97399981 - RMER17D2 LTR ERVK 0 809 414 3 1029 701 70 10 0 chr4 58230139 58230239 -97399881 + (GGAGA)n Simple_repeat Simple_repeat 1 101 0 3 1029 4277 122 148 32 chr4 58230239 58230560 -97399560 - RMER17D2 LTR ERVK -396 413 1 3 1029 464 252 78 0 chr4 58230628 58230731 -97399389 - PB1D10 SINE Alu -5 112 2 3 1029 212 0 36 0 chr4 58231351 58231379 -97398741 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3 1029 5725 65 102 4 chr4 58232096 58233557 -97396563 + L1VL2 LINE L1 211 1826 -1789 3 1029 34 0 0 0 chr4 58234421 58234455 -97395665 + AT_rich Low_complexity Low_complexity 1 34 0 3 1029 552 278 117 69 chr4 58234779 58235468 -97394652 - L1MB2 LINE L1 -229 5942 5205 3 1029 24 32 0 0 chr4 58235572 58235603 -97394517 + AT_rich Low_complexity Low_complexity 1 31 0 3 1029 890 118 12 12 chr4 58235670 58235833 -97394287 + (TTC)n Simple_repeat Simple_repeat 2 164 0 3 1029 227 133 22 0 chr4 58236641 58236686 -97393434 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1029 327 231 9 18 chr4 58236694 58236804 -97393316 + (TA)n Simple_repeat Simple_repeat 2 110 0 3 1029 36226 37 0 1 chr4 58237677 58242908 -97387212 + L1Md_Gf LINE L1 265 5589 -297 3 1029 9498 7 1 0 chr4 58242908 58243903 -97386217 + L1Md_T LINE L1 5587 6582 0 3 1029 36226 43 0 0 chr4 58243903 58243917 -97386203 + L1Md_Gf LINE L1 5590 5603 -283 3 1029 254 50 0 24 chr4 58245242 58245283 -97384837 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 1029 21 36 0 0 chr4 58245775 58245803 -97384317 + AT_rich Low_complexity Low_complexity 1 28 0 3 1029 288 361 21 0 chr4 58246084 58246181 -97383939 - MLT1H LTR MaLR -16 473 375 3 1029 366 329 63 84 chr4 58246233 58246472 -97383648 - MLT1H LTR MaLR -226 353 119 3 1029 899 326 90 41 chr4 58247110 58247500 -97382620 + MLT1F2 LTR MaLR 1 409 -151 3 1029 498 318 70 77 chr4 58247824 58248434 -97381686 + L1MEf LINE L1 424 1029 -5213 3 1029 182 150 0 24 chr4 58248463 58248504 -97381616 + GA-rich Low_complexity Low_complexity 2 41 0 3 1029 300 302 96 34 chr4 58249174 58249327 -97380793 + L1MEf LINE L1 2313 2477 -3669 3 1029 561 68 0 0 chr4 58249327 58249401 -97380719 + (GGA)n Simple_repeat Simple_repeat 3 76 0 3 1029 300 302 96 34 chr4 58249401 58249425 -97380695 + L1MEf LINE L1 2478 2501 -3645 3 1029 561 232 119 103 chr4 58249647 58250085 -97380035 + L1MEf LINE L1 2731 3175 -2971 3 1029 8082 134 12 2 chr4 58250154 58251440 -97378680 - L1_Mur2 LINE L1 -1224 4653 3354 3 1029 6887 86 48 39 chr4 58251439 58251959 -97378161 + Lx LINE L1 5607 6131 -523 3 1029 399 21 0 0 chr4 58251959 58252007 -97378113 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 1029 1081 83 8 0 chr4 58252007 58252139 -97377981 - B1_Mm SINE Alu -13 134 2 3 1029 6887 86 48 39 chr4 58252139 58252649 -97377471 + Lx LINE L1 6132 6647 -7 3 1029 1286 73 6 0 chr4 58252650 58252829 -97377291 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1029 294 289 29 35 chr4 58252831 58253003 -97377117 + L1MD LINE L1 3275 3445 -2701 3 1029 828 236 53 13 chr4 58254223 58254451 -97375669 - RMER15 LTR ERVL -82 493 257 3 1029 1170 290 40 48 chr4 58254488 58255068 -97375052 - L1M2 LINE L1 -2247 3896 3322 3 1029 1249 313 43 24 chr4 58255387 58255855 -97374265 - RMER15-int LTR ERVL -3859 1140 664 3 1029 227 228 62 25 chr4 58256740 58256821 -97373299 + L1M3 LINE L1 5556 5639 -550 3 1029 589 275 47 6 chr4 58257172 58257344 -97372776 + ID_B1 SINE B4 2 180 -44 3 1029 192 97 0 0 chr4 58257361 58257392 -97372728 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1029 231 331 72 22 chr4 58258506 58258645 -97371475 - L1M6 LINE L1 -6254 242 97 3 1029 465 19 0 0 chr4 58258662 58258716 -97371404 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1029 681 312 23 52 chr4 58258743 58259000 -97371120 - B4A SINE B4 -32 260 1 3 1029 1873 191 103 8 chr4 58259073 58259453 -97370667 - MTD LTR MaLR 0 419 4 3 1029 731 236 38 27 chr4 58259712 58259895 -97370225 + Lx8 LINE L1 6928 7112 -361 3 1029 3316 40 42 0 chr4 58260438 58260818 -97369302 + MTA_Mm LTR MaLR 1 396 0 3 1029 247 200 77 103 chr4 58261981 58262059 -97368061 + B3 SINE B2 1 76 -140 3 1029 13565 70 34 7 chr4 58262059 58264453 -97365667 + L1VL4 LINE L1 242 2707 -852 4 1029 315 0 0 0 chr4 58264453 58264488 -97365632 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1029 13565 67 39 9 chr4 58264488 58264616 -97365504 + L1VL4 LINE L1 2708 2835 -724 4 1029 870 102 0 0 chr4 58264616 58264743 -97365377 + (TTTC)n Simple_repeat Simple_repeat 4 130 0 4 1029 267 103 0 0 chr4 58264743 58264782 -97365338 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 4 1029 1061 119 11 0 chr4 58264782 58264959 -97365161 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1029 476 275 214 46 chr4 58264975 58265262 -97364858 + MTC LTR MaLR 35 354 -53 4 1029 233 29 0 29 chr4 58265262 58265297 -97364823 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1029 189 0 0 0 chr4 58265319 58265340 -97364780 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1029 681 231 43 152 chr4 58265345 58265529 -97364591 + B3 SINE B2 32 195 0 4 1029 324 0 0 0 chr4 58266745 58266781 -97363339 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1029 789 91 22 44 chr4 58266789 58266972 -97363148 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1029 231 140 0 0 chr4 58266967 58267017 -97363103 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1029 38574 57 11 9 chr4 58267863 58274069 -97356051 - L1Md_F3 LINE L1 -14 6573 407 4 1029 313 277 67 36 chr4 58274390 58274555 -97355565 + L1ME1 LINE L1 5956 6125 -54 4 1029 1979 156 101 8 chr4 58274622 58274977 -97355143 - ORR1B1 LTR MaLR -6 388 1 4 1029 5371 59 14 12 chr4 58275737 58276405 -97353715 + L1_Mus2 LINE L1 5897 6565 -1 4 1029 414 220 100 0 chr4 58276440 58276540 -97353580 - ORR1E LTR MaLR -240 119 10 4 1029 832 210 106 15 chr4 58277481 58277679 -97352441 - B3 SINE B2 0 216 1 4 1029 257 0 30 0 chr4 58277776 58277809 -97352311 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1029 203 32 65 0 chr4 58277846 58277877 -97352243 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 4 1029 502 271 0 9 chr4 58277903 58278011 -97352109 - ID_B1 SINE B4 -101 123 17 4 1029 249 299 0 15 chr4 58277957 58278025 -97352095 - BC1_Mm scRNA scRNA -83 69 3 4 1029 1552 184 144 56 chr4 58278323 58278663 -97351457 - ORR1D1 LTR MaLR -4 370 1 4 1029 189 344 82 10 chr4 58278739 58278836 -97351284 + L3 LINE CR1 3309 3412 -1077 4 1029 841 194 7 0 chr4 58280173 58280317 -97349803 + B1_Mur1 SINE Alu 2 146 -3 4 1029 302 0 26 0 chr4 58283182 58283220 -97346900 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1029 189 0 0 0 chr4 58283310 58283331 -97346789 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 1029 233 353 0 0 chr4 58283331 58283382 -97346738 - ID4 SINE ID -16 67 17 4 1029 749 318 10 0 chr4 58283741 58283942 -97346178 - ID_B1 SINE B4 -13 211 9 4 1029 284 200 141 14 chr4 58283955 58284026 -97346094 - ID4_ SINE ID -2 81 2 4 1029 414 69 0 0 chr4 58284689 58284747 -97345373 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1029 464 355 57 72 chr4 58285536 58285870 -97344250 + L2b LINE L2 3045 3373 -2 4 1029 200 376 11 0 chr4 58285934 58286027 -97344093 + MIR SINE MIR 119 212 -50 4 1029 249 302 16 0 chr4 58286358 58286421 -97343699 - B4 SINE B4 -227 65 2 4 1029 544 340 80 0 chr4 58286514 58286664 -97343456 + RSINE1 SINE B4 4 165 0 4 1029 855 95 48 0 chr4 58286665 58287119 -97343001 + (CA)n Simple_repeat Simple_repeat 1 475 0 4 1029 300 78 39 19 chr4 58287126 58287178 -97342942 + HAL1-3A_ME LINE L1 1976 2028 -830 4 1029 257 128 0 21 chr4 58287864 58287912 -97342208 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1029 960 267 48 45 chr4 58289317 58289607 -97340513 - B4 SINE B4 0 292 2 4 1029 1788 260 32 30 chr4 58289640 58290115 -97340005 - RLTR28B LTR ERVL -5 476 1 4 1029 556 285 157 0 chr4 58290199 58290371 -97339749 - ID_B1 SINE B4 -18 206 8 4 1029 246 95 0 0 chr4 58290552 58290594 -97339526 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1029 217 158 0 50 chr4 58290664 58290724 -97339396 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 4 1029 456 46 46 0 chr4 58290757 58290822 -97339298 - L1Md_F2 LINE L1 -2 6580 6513 4 1029 3661 35 5 0 chr4 58290822 58291253 -97338867 + L1Md_F2 LINE L1 6117 6549 -33 4 1029 510 268 5 52 chr4 58291653 58291791 -97338329 - PB1 SINE Alu -2 147 24 4 1029 324 282 180 31 chr4 58291686 58291814 -97338306 - ID_B1 SINE B4 -3 221 75 4 1029 1194 172 5 9 chr4 58292237 58292448 -97337672 - RMER19A LTR ERVK -527 210 1 4 1029 225 235 29 29 chr4 58292551 58292656 -97337464 + Lx9 LINE L1 7393 7497 -147 4 1029 27 112 0 0 chr4 58292692 58292817 -97337303 + AT_rich Low_complexity Low_complexity 1 125 0 4 1029 29 28 0 0 chr4 58292896 58292932 -97337188 + AT_rich Low_complexity Low_complexity 1 36 0 4 1029 391 365 87 78 chr4 58293021 58293458 -97336662 - MLT1N2 LTR MaLR -20 542 102 4 1029 216 0 0 0 chr4 58293625 58293649 -97336471 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1029 718 207 6 6 chr4 58293658 58293838 -97336282 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1029 507 314 22 0 chr4 58294450 58294587 -97335533 + LTR33 LTR ERVL 5 144 -371 4 1029 659 277 40 27 chr4 58294807 58295021 -97335099 - ORR1D2 LTR MaLR -2 368 164 4 1029 306 263 18 0 chr4 58295062 58295233 -97334887 + GA-rich Low_complexity Low_complexity 1 174 0 4 1029 531 263 90 11 chr4 58295234 58295411 -97334709 - ORR1D2 LTR MaLR -168 191 1 4 1029 804 261 20 15 chr4 58296281 58296483 -97333637 - B3 SINE B2 -12 204 2 4 1029 926 271 172 33 chr4 58296822 58297400 -97332720 - L1MA7 LINE L1 -145 6146 5489 4 1029 915 224 33 42 chr4 58297591 58297805 -97332315 + MTEb LTR MaLR 31 242 -137 4 1029 369 0 0 0 chr4 58297806 58297847 -97332273 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1029 228 35 0 0 chr4 58298907 58298936 -97331184 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1029 471 135 0 0 chr4 58299145 58299241 -97330879 + (GA)n Simple_repeat Simple_repeat 1 96 0 4 1029 300 27 0 0 chr4 58299517 58299554 -97330566 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1029 25 31 0 0 chr4 58303267 58303299 -97326821 + AT_rich Low_complexity Low_complexity 1 32 0 4 1029 653 261 22 71 chr4 58303432 58303641 -97326479 - B4A SINE B4 -85 207 1 4 1029 727 80 32 23 chr4 58304355 58304573 -97325547 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 1029 713 70 39 39 chr4 58304600 58304779 -97325341 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1029 621 317 59 34 chr4 58304804 58305042 -97325078 - B4A SINE B4 0 292 49 4 1029 226 284 78 94 chr4 58305098 58305226 -97324894 - MER63D DNA AcHobo -933 128 3 4 1029 523 278 8 8 chr4 58305358 58305492 -97324628 + B3A SINE B2 2 135 -63 4 1029 1275 262 63 25 chr4 58305518 58306068 -97324052 - L1MB2 LINE L1 -208 5966 5341 4 1029 211 324 303 0 chr4 58306107 58306252 -97323868 - B4A SINE B4 -16 276 88 4 1029 944 312 28 34 chr4 58307028 58307380 -97322740 - MLT1A0 LTR MaLR -15 350 1 4 1029 244 246 13 40 chr4 58307619 58307695 -97322425 - MLT1A0-int LTR MaLR -771 600 527 4 1029 888 238 58 29 chr4 58307726 58307934 -97322186 - B3 SINE B2 -2 214 1 4 1029 398 356 75 58 chr4 58307941 58308368 -97321752 - MLT1A0-int LTR MaLR -841 530 97 4 1029 24 0 0 0 chr4 58308659 58308683 -97321437 + AT_rich Low_complexity Low_complexity 1 24 0 4 1029 635 292 21 42 chr4 58308696 58308889 -97321231 + B4 SINE B4 2 190 -102 4 1029 296 261 89 46 chr4 58309167 58309404 -97320716 + RMER12 LTR ERVK 740 986 -336 4 1029 207 69 0 0 chr4 58309405 58309434 -97320686 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1029 799 245 30 25 chr4 58309911 58310108 -97320012 - B3A SINE B2 0 198 1 4 1029 1263 61 0 0 chr4 58311407 58311554 -97318566 - B1_Mus2 SINE Alu 0 147 1 4 1029 1126 170 29 34 chr4 58311669 58311907 -97318213 - RMER1A Other Other -5 1025 789 4 1029 225 406 46 25 chr4 58313063 58313260 -97316860 - L4 LINE RTE -637 1392 1192 4 1029 359 282 8 93 chr4 58313793 58313922 -97316198 + PB1D9 SINE Alu 1 118 -2 4 1029 22 94 0 0 chr4 58313961 58314025 -97316095 + AT_rich Low_complexity Low_complexity 1 64 0 4 1029 423 0 0 0 chr4 58314663 58314710 -97315410 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1029 586 259 54 34 chr4 58314721 58314869 -97315251 - B3A SINE B2 -45 153 3 4 1029 231 179 0 0 chr4 58315178 58315245 -97314875 + (CAT)n Simple_repeat Simple_repeat 2 68 0 4 1029 469 227 275 9 chr4 58315455 58315673 -97314447 + B4A SINE B4 13 288 -4 4 1029 180 0 0 0 chr4 58315799 58315819 -97314301 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1029 1120 74 0 0 chr4 58315819 58315954 -97314166 - B1_Mm SINE Alu -12 135 1 4 1029 353 238 20 10 chr4 58317460 58317562 -97312558 + Lx6 LINE L1 7346 7448 -12 4 1029 423 189 25 0 chr4 58318093 58318215 -97311905 + (TA)n Simple_repeat Simple_repeat 2 126 0 4 1029 904 167 230 0 chr4 58318292 58318466 -97311654 + B3 SINE B2 3 216 0 4 1029 1061 176 86 58 chr4 58319050 58319312 -97310808 - ORR1D1 LTR MaLR -141 233 1 4 1029 209 232 125 0 chr4 58319515 58319571 -97310549 - MIR SINE MIR -119 143 81 4 1029 612 174 0 0 chr4 58319705 58319860 -97310260 + (TG)n Simple_repeat Simple_repeat 1 155 0 4 1029 195 69 0 0 chr4 58319883 58319912 -97310208 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 1029 557 265 0 15 chr4 58320115 58320249 -97309871 + MER94 DNA AcHobo 2 133 -1 4 1029 237 277 15 0 chr4 58320830 58320895 -97309225 + L1MEd LINE L1 14 79 -6040 4 1029 622 189 0 32 chr4 58321162 58321348 -97308772 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1029 328 233 0 43 chr4 58321386 58321574 -97308546 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1029 506 233 0 6 chr4 58321608 58321789 -97308331 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1029 324 241 0 0 chr4 58321815 58321931 -97308189 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 1029 290 297 36 9 chr4 58322302 58322414 -97307706 + Lx8 LINE L1 7134 7248 -225 4 1029 261 118 0 0 chr4 58323068 58323119 -97307001 + (T)n Simple_repeat Simple_repeat 1 51 0 5 1029 718 274 5 62 chr4 58324026 58324236 -97305884 - B3A SINE B2 0 198 1 5 1029 231 190 0 0 chr4 58324434 58324492 -97305628 + T-rich Low_complexity Low_complexity 1 58 0 5 1029 1068 111 0 0 chr4 58324770 58324905 -97305215 + B1_Mus1 SINE Alu 1 135 -13 5 1029 459 0 0 0 chr4 58324909 58324960 -97305160 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 5 1029 883 126 6 33 chr4 58324961 58325142 -97304978 + GA-rich Low_complexity Low_complexity 4 179 0 5 1029 755 110 20 14 chr4 58325587 58325735 -97304385 + (TCTA)n Simple_repeat Simple_repeat 4 152 0 5 1030 492 192 106 0 chr4 58327333 58327437 -97302683 + B1_Mur4 SINE Alu 19 133 -17 5 1030 192 77 0 0 chr4 58327448 58327474 -97302646 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 5 1030 325 279 138 8 chr4 58327476 58327606 -97302514 + HAL1-3A_ME LINE L1 2292 2438 -420 5 1030 419 139 6 77 chr4 58327616 58327772 -97302348 + GA-rich Low_complexity Low_complexity 1 145 0 5 1030 517 354 33 14 chr4 58328202 58328417 -97301703 + L4 LINE RTE 1122 1340 -689 5 1030 217 132 0 0 chr4 58328539 58328577 -97301543 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1030 577 263 13 44 chr4 58328933 58329092 -97301028 + B3A SINE B2 1 154 -44 5 1030 1284 147 31 36 chr4 58329447 58329672 -97300448 - URR1B DNA MER1_type -1 224 1 5 1030 266 310 121 44 chr4 58329732 58329914 -97300206 - ORR1E LTR MaLR -162 197 2 5 1030 22 35 0 0 chr4 58330884 58330913 -97299207 + AT_rich Low_complexity Low_complexity 1 29 0 5 1030 528 16 0 0 chr4 58331243 58331304 -97298816 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1030 529 262 47 27 chr4 58331596 58331745 -97298375 - B3A SINE B2 -33 165 14 5 1030 384 77 0 0 chr4 58331847 58331899 -97298221 + (CAGAA)n Simple_repeat Simple_repeat 2 53 0 5 1030 261 0 0 0 chr4 58332719 58332748 -97297372 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 5 1030 215 344 0 0 chr4 58332753 58332814 -97297306 - PB1D10 SINE Alu -15 102 42 5 1030 519 304 105 83 chr4 58333281 58333755 -97296365 - MLT1F1 LTR MaLR -4 485 50 5 1030 423 98 0 0 chr4 58334220 58334281 -97295839 + (TCC)n Simple_repeat Simple_repeat 3 63 0 5 1030 597 286 34 40 chr4 58334297 58334361 -97295759 - B3 SINE B2 -40 176 113 5 1030 5122 16 0 0 chr4 58334361 58334907 -97295213 + L1Md_A LINE L1 6037 6582 0 5 1030 671 169 1 1 chr4 58334907 58335017 -97295103 - B2_Mm2 SINE B2 -104 112 3 5 1030 1307 75 0 6 chr4 58335638 58335975 -97294145 + (TCTA)n Simple_repeat Simple_repeat 1 335 0 5 1030 252 77 0 0 chr4 58336936 58336975 -97293145 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1030 339 25 0 0 chr4 58338297 58338337 -97291783 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1030 237 305 84 19 chr4 58338433 58338540 -97291580 + PB1D10 SINE Alu 3 116 -1 5 1030 214 29 57 0 chr4 58338702 58338737 -97291383 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 5 1030 21 0 0 0 chr4 58339280 58339301 -97290819 + AT_rich Low_complexity Low_complexity 1 21 0 5 1030 769 191 0 17 chr4 58339378 58339534 -97290586 + CT-rich Low_complexity Low_complexity 25 178 0 5 1030 230 51 0 49 chr4 58339534 58339575 -97290545 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1030 769 191 0 17 chr4 58339575 58339599 -97290521 + polypyrimidine Low_complexity Low_complexity 1 24 0 5 1030 360 296 28 143 chr4 58341142 58341441 -97288679 - ORR1E LTR MaLR 0 379 83 5 1030 709 206 110 0 chr4 58341442 58341597 -97288523 + B3A SINE B2 2 173 -25 5 1030 372 287 0 0 chr4 58341676 58341770 -97288350 - ORR1E LTR MaLR -262 97 4 5 1030 376 314 37 87 chr4 58343256 58343497 -97286623 - L2a LINE L2 0 3426 3198 5 1030 830 288 13 31 chr4 58344729 58344955 -97285165 - ID_B1 SINE B4 -1 223 2 5 1030 1320 202 154 47 chr4 58346640 58346978 -97283142 + ORR1D1 LTR MaLR 1 374 0 5 1030 251 328 62 55 chr4 58347339 58347484 -97282636 - L2a LINE L2 -3 3423 3278 5 1030 237 277 104 21 chr4 58347710 58347806 -97282314 - L2a LINE L2 -374 3045 2942 5 1030 267 327 73 18 chr4 58347891 58348056 -97282064 - L1MEg LINE L1 -5416 668 495 5 1030 370 114 25 0 chr4 58348420 58348499 -97281621 + (TTTTG)n Simple_repeat Simple_repeat 5 85 0 5 1030 1480 205 119 12 chr4 58348614 58348950 -97281170 - MTD LTR MaLR -36 383 12 5 1030 225 241 0 0 chr4 58349484 58349538 -97280582 + MTEb LTR MaLR 1 54 -325 5 1030 411 56 0 0 chr4 58350117 58350171 -97279949 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1030 31 26 0 0 chr4 58350624 58350662 -97279458 + AT_rich Low_complexity Low_complexity 1 38 0 5 1030 360 0 0 0 chr4 58350973 58351013 -97279107 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1030 895 247 0 27 chr4 58351025 58351208 -97278912 - B3A SINE B2 -20 178 1 5 1030 240 274 24 0 chr4 58351240 58351324 -97278796 - L1MA9 LINE L1 -43 6269 6184 5 1030 1141 144 138 5 chr4 58351375 58351570 -97278550 - URR1A DNA MER1_type -1 225 5 5 1030 677 286 159 20 chr4 58351696 58351992 -97278128 - MER2 DNA MER2_type -8 337 1 5 1030 1450 229 78 123 chr4 58352475 58353027 -97277093 - RLTR11A LTR ERVK -1 527 1 5 1030 221 163 20 0 chr4 58353381 58353430 -97276690 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1030 351 352 35 59 chr4 58353437 58353522 -97276598 - B4 SINE B4 -125 167 78 5 1030 405 0 0 0 chr4 58353522 58353567 -97276553 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1030 351 352 35 59 chr4 58353567 58353650 -97276470 - B4 SINE B4 -215 77 4 5 1030 386 304 171 60 chr4 58353941 58354158 -97275962 + B4 SINE B4 41 281 -11 5 1030 254 306 0 14 chr4 58354182 58354255 -97275865 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1030 308 291 48 113 chr4 58354632 58354941 -97275179 - ORR1E LTR MaLR 0 379 77 5 1030 926 283 45 58 chr4 58354998 58355465 -97274655 - RLTR11B LTR ERVK -55 472 5 5 1030 194 367 0 16 chr4 58355580 58355641 -97274479 + MIR SINE MIR 8 67 -195 5 1030 369 224 94 0 chr4 58355669 58355754 -97274366 + RSINE1 SINE B4 15 107 -58 5 1030 2209 119 115 3 chr4 58356390 58356720 -97273400 - ORR1B2 LTR MaLR 0 367 1 5 1030 310 232 128 68 chr4 58357447 58357595 -97272525 - HAL1-3A_ME LINE L1 -419 2439 2283 5 1030 240 259 0 0 chr4 58357596 58357650 -97272470 + CT-rich Low_complexity Low_complexity 3 56 0 5 1030 341 93 19 0 chr4 58357774 58357828 -97272292 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 5 1030 865 288 38 38 chr4 58358948 58359240 -97270880 - B4A SINE B4 0 292 1 5 1030 486 0 0 0 chr4 58359591 58359645 -97270475 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1030 538 134 55 0 chr4 58360236 58360400 -97269720 + (TCTA)n Simple_repeat Simple_repeat 3 175 0 5 1030 288 250 0 179 chr4 58361202 58361319 -97268801 + ID_B1 SINE B4 129 224 0 5 1030 190 55 0 53 chr4 58361460 58361498 -97268622 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 5 1030 356 83 33 0 chr4 58362096 58362156 -97267964 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 5 1030 25 0 0 0 chr4 58362221 58362246 -97267874 + AT_rich Low_complexity Low_complexity 1 25 0 5 1030 283 257 71 27 chr4 58362411 58362523 -97267597 + PB1D10 SINE Alu 1 117 0 5 1030 780 309 44 4 chr4 58363303 58363573 -97266547 - MER58B DNA MER1_type 0 341 61 5 1030 451 283 37 43 chr4 58363614 58363802 -97266318 + L1MA8 LINE L1 6020 6206 -85 5 1030 260 91 23 0 chr4 58364859 58364903 -97265217 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 1030 420 20 0 0 chr4 58365124 58365173 -97264947 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1030 29 0 0 0 chr4 58366122 58366151 -97263969 + AT_rich Low_complexity Low_complexity 1 29 0 5 1030 265 308 40 66 chr4 58367253 58367400 -97262720 + RLTR21 LTR ERVK 1030 1169 -403 5 1030 384 40 0 0 chr4 58367400 58367450 -97262670 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1030 265 308 40 66 chr4 58367450 58367528 -97262592 + RLTR21 LTR ERVK 1170 1249 -323 5 1030 909 171 150 31 chr4 58368059 58368252 -97261868 - B3 SINE B2 0 216 1 5 1030 318 253 125 11 chr4 58370381 58370469 -97259651 - B1F1 SINE Alu -51 98 1 5 1030 354 297 9 26 chr4 58370491 58370605 -97259515 - MER5B DNA MER1_type -19 159 48 5 1030 406 234 103 40 chr4 58370607 58370781 -97259339 - L1MA6 LINE L1 -5 6295 6111 5 1030 2311 144 70 3 chr4 58370792 58371161 -97258959 - ORR1B1 LTR MaLR 0 394 1 5 1030 295 172 17 33 chr4 58371281 58371341 -97258779 + RSINE1 SINE B4 55 113 -52 5 1030 468 0 0 0 chr4 58371637 58371689 -97258431 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1030 553 252 78 0 chr4 58371703 58371818 -97258302 - RSINE1 SINE B4 -41 124 1 5 1030 219 367 0 0 chr4 58372358 58372437 -97257683 - MIRb SINE MIR -147 121 43 5 1030 3387 183 78 17 chr4 58372515 58373203 -97256917 - Lx5 LINE L1 -6 7044 6315 5 1030 3730 156 8 29 chr4 58373192 58373630 -97256490 + Lx5 LINE L1 5646 6079 -971 5 1030 576 0 0 0 chr4 58373630 58373694 -97256426 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1030 3730 156 8 29 chr4 58373694 58373920 -97256200 + Lx5 LINE L1 6080 6296 -754 5 1030 222 171 0 0 chr4 58374183 58374224 -97255896 + GA-rich Low_complexity Low_complexity 3 43 0 5 1030 219 36 0 0 chr4 58374447 58374475 -97255645 + (TTG)n Simple_repeat Simple_repeat 1 28 0 5 1030 243 0 0 0 chr4 58374478 58374505 -97255615 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1030 351 329 36 7 chr4 58374547 58374685 -97255435 - L3 LINE CR1 -306 4183 4042 5 1030 525 301 19 19 chr4 58374837 58374993 -97255127 + B4 SINE B4 1 156 -136 5 1030 552 68 0 0 chr4 58375247 58375320 -97254800 + (TTA)n Simple_repeat Simple_repeat 2 74 0 5 1030 216 0 0 0 chr4 58375586 58375610 -97254510 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1030 346 197 84 0 chr4 58376136 58376207 -97253913 - MLT1A0 LTR MaLR -164 201 125 6 1030 224 220 20 0 chr4 58376838 58376888 -97253232 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1030 291 272 37 12 chr4 58376903 58376985 -97253135 - B4A SINE B4 -6 286 203 6 1030 577 72 0 15 chr4 58377938 58378027 -97252093 - L1Md_F2 LINE L1 -300 6282 6189 6 1030 252 0 0 0 chr4 58379268 58379296 -97250824 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1030 572 185 242 28 chr4 58380617 58380643 -97249477 - B3 SINE B2 0 216 189 6 1030 225 83 0 0 chr4 58380643 58380679 -97249441 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1030 572 185 242 28 chr4 58380679 58380830 -97249290 - B3 SINE B2 -28 188 2 6 1030 21 0 0 0 chr4 58380907 58380928 -97249192 + AT_rich Low_complexity Low_complexity 1 21 0 6 1030 459 0 0 0 chr4 58381444 58381495 -97248625 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1030 351 0 0 0 chr4 58381495 58381533 -97248587 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1030 450 0 0 0 chr4 58382234 58382284 -97247836 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6 1030 266 224 45 0 chr4 58382410 58382477 -97247643 - L2a LINE L2 -67 3359 3290 6 1030 1056 262 39 14 chr4 58382708 58382991 -97247129 + B4A SINE B4 1 290 -2 6 1030 307 292 47 0 chr4 58383023 58383129 -97246991 + L1M4b LINE L1 1833 1943 -5391 6 1030 986 152 244 4 chr4 58383207 58383465 -97246655 + Lx9 LINE L1 7322 7641 -3 6 1030 347 255 133 0 chr4 58384274 58384372 -97245748 + ID_B1 SINE B4 102 212 -12 6 1030 523 84 0 21 chr4 58384372 58384469 -97245651 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 1030 348 43 0 0 chr4 58384470 58384516 -97245604 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1030 2149 79 224 23 chr4 58384824 58385172 -97244948 - BGLII LTR ERVK -3 418 1 6 1030 707 204 84 62 chr4 58388475 58388653 -97241467 + B3A SINE B2 1 182 -16 6 1030 21 0 0 0 chr4 58388675 58388696 -97241424 + AT_rich Low_complexity Low_complexity 1 21 0 6 1030 198 0 0 0 chr4 58388837 58388859 -97241261 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1030 480 328 82 27 chr4 58388876 58389137 -97240983 - B4 SINE B4 -12 280 21 6 1030 23 0 0 0 chr4 58389173 58389196 -97240924 + AT_rich Low_complexity Low_complexity 1 23 0 6 1030 249 306 10 48 chr4 58389210 58389313 -97240807 + PB1D10 SINE Alu 1 99 -18 6 1030 534 37 37 0 chr4 58389682 58389763 -97240357 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 6 1030 247 257 55 0 chr4 58389777 58389886 -97240234 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 6 1030 360 278 115 47 chr4 58389980 58390301 -97239819 - L1ME4a LINE L1 -298 5826 5484 6 1030 263 317 0 47 chr4 58390602 58390708 -97239412 - L1MD LINE L1 -2251 3895 3795 6 1030 226 256 128 0 chr4 58390867 58390953 -97239167 + ORR1E LTR MaLR 2 98 -261 6 1030 1716 194 54 72 chr4 58391233 58391622 -97238498 + RLTR14 LTR ERV1 1 382 0 6 1030 1296 199 159 121 chr4 58391868 58392308 -97237812 + MT2A LTR ERVL 2 458 -75 6 1030 576 0 0 0 chr4 58392308 58392372 -97237748 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1030 207 313 0 0 chr4 58392822 58392889 -97237231 + CT-rich Low_complexity Low_complexity 3 69 0 6 1030 270 0 0 0 chr4 58393176 58393206 -97236914 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1030 484 186 9 9 chr4 58393724 58393838 -97236282 + CT-rich Low_complexity Low_complexity 2 115 0 6 1030 769 296 92 92 chr4 58394229 58394649 -97235471 + Lx8 LINE L1 6932 7331 -142 6 1030 333 0 0 0 chr4 58394649 58394686 -97235434 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1030 297 0 0 0 chr4 58394686 58394718 -97235402 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1030 769 296 92 92 chr4 58394718 58394798 -97235322 + Lx8 LINE L1 7332 7431 -42 6 1030 226 368 8 8 chr4 58396589 58396707 -97233413 - L1M5 LINE L1 -509 5615 5498 6 1030 254 203 44 59 chr4 58397141 58397209 -97232911 + L1MDa LINE L1 25 91 -6542 6 1030 765 307 62 14 chr4 58397331 58397685 -97232435 + L1MDa LINE L1 167 537 -6096 6 1030 282 215 46 0 chr4 58397712 58397777 -97232343 + L1MDa LINE L1 2182 2249 -4384 6 1030 323 132 15 0 chr4 58397817 58397885 -97232235 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1030 424 258 58 43 chr4 58397899 58398037 -97232083 - B1F2 SINE Alu -8 141 2 6 1030 455 227 0 7 chr4 58398051 58398206 -97231914 + CT-rich Low_complexity Low_complexity 1 154 0 6 1030 606 28 0 0 chr4 58398214 58398286 -97231834 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1030 688 328 10 0 chr4 58398309 58398501 -97231619 - B4A SINE B4 -6 286 93 6 1030 38784 32 1 0 chr4 58398506 58405565 -97224555 - L1Md_T LINE L1 0 6585 1 6 1030 381 256 0 11 chr4 58405577 58405664 -97224456 - B4A SINE B4 -206 86 1 6 1030 345 288 101 30 chr4 58406253 58406421 -97223699 - LTR16A1 LTR ERVL -31 425 246 6 1030 303 281 156 0 chr4 58406870 58406966 -97223154 + PB1D10 SINE Alu 3 113 -34 6 1030 517 286 54 25 chr4 58407220 58407411 -97222709 + MTEa LTR MaLR 117 347 -32 6 1030 524 391 16 11 chr4 58408052 58408238 -97221882 + MER115 DNA Tip100 14 200 -493 6 1030 663 298 81 14 chr4 58408584 58408795 -97221325 - ORR1E LTR MaLR -121 238 14 6 1030 665 174 32 24 chr4 58408834 58409087 -97221033 + (CATATA)n Simple_repeat Simple_repeat 1 254 0 6 1030 231 67 0 0 chr4 58409087 58409117 -97221003 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1030 463 421 58 27 chr4 58409715 58409976 -97220144 - MamGypLTR1b LTR Gypsy -170 612 344 6 1030 218 156 44 0 chr4 58412655 58412700 -97217420 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 6 1030 280 221 265 0 chr4 58412703 58412771 -97217349 - PB1D10 SINE Alu 0 127 41 6 1030 245 301 49 74 chr4 58412825 58412947 -97217173 + L2b LINE L2 3257 3375 0 6 1030 770 233 61 34 chr4 58413010 58413272 -97216848 + RCHARR1 DNA MER1_type 623 891 -83 6 1030 189 0 0 0 chr4 58413289 58413310 -97216810 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 6 1030 1172 89 7 0 chr4 58413315 58413461 -97216659 - B1_Mus1 SINE Alu -1 147 1 6 1030 419 209 151 9 chr4 58413482 58413588 -97216532 + RSINE1 SINE B4 4 124 -41 6 1030 464 0 18 0 chr4 58413599 58413655 -97216465 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1030 504 0 0 0 chr4 58414342 58414398 -97215722 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1030 769 289 18 42 chr4 58414441 58414658 -97215462 - B4 SINE B4 -79 213 2 6 1030 213 140 35 17 chr4 58415457 58415515 -97214605 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1030 231 167 0 0 chr4 58415622 58415664 -97214456 + GA-rich Low_complexity Low_complexity 2 43 0 6 1030 276 77 0 0 chr4 58416276 58416315 -97213805 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1030 287 243 29 0 chr4 58416839 58416909 -97213211 + L1M5 LINE L1 4705 4776 -1370 6 1030 246 233 0 0 chr4 58417598 58417658 -97212462 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 6 1030 670 281 7 0 chr4 58417764 58417910 -97212210 + RSINE1 SINE B4 2 148 -17 6 1030 1619 184 38 68 chr4 58417845 58418212 -97211908 + ORR1D1-int LTR MaLR 1013 1368 -2 6 1030 1447 156 192 3 chr4 58418214 58418522 -97211598 + ORR1D1 LTR MaLR 1 366 -8 6 1030 331 288 83 17 chr4 58418664 58418844 -97211276 - MIR SINE MIR 0 262 71 6 1030 293 363 99 15 chr4 58419099 58419304 -97210816 - MIR SINE MIR -38 230 4 6 1030 37172 45 8 0 chr4 58419370 58424734 -97205386 + L1Md_T LINE L1 241 5586 -297 6 1030 8935 34 3 0 chr4 58424734 58425727 -97204393 + L1Md_T LINE L1 5587 6582 0 6 1030 21 0 0 0 chr4 58425727 58425748 -97204372 + AT_rich Low_complexity Low_complexity 1 21 0 6 1030 496 246 96 8 chr4 58426157 58426325 -97203795 + B3 SINE B2 1 194 -4 6 1030 248 250 23 35 chr4 58427116 58427203 -97202917 + MIR SINE MIR 18 103 -105 6 1030 263 252 37 55 chr4 58427370 58427479 -97202641 - Lx8 LINE L1 -8 7465 7359 6 1030 784 252 0 85 chr4 58428477 58428689 -97201431 - B3A SINE B2 -3 195 2 6 1030 2059 168 25 27 chr4 58429021 58429426 -97200694 - MTC LTR MaLR 0 421 18 6 1030 231 239 88 15 chr4 58429609 58429677 -97200443 + ID2 SINE ID 1 73 -10 6 1030 242 266 0 59 chr4 58429705 58429773 -97200347 + B4A SINE B4 166 229 -63 6 1030 480 118 50 0 chr4 58429808 58429927 -97200193 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 6 1030 658 217 153 5 chr4 58430836 58431058 -97199062 - Lx9 LINE L1 -7 7637 7383 6 1030 554 290 22 33 chr4 58431535 58431717 -97198403 - B3 SINE B2 0 216 37 6 1030 183 186 0 0 chr4 58431900 58431943 -97198177 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1030 708 35 0 0 chr4 58431943 58432030 -97198090 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1030 1826 196 13 71 chr4 58433812 58434207 -97195913 - ORR1D1 LTR MaLR 0 374 3 6 1030 885 283 35 43 chr4 58434245 58434592 -97195528 + Lx8 LINE L1 7130 7473 0 6 1030 1275 61 0 0 chr4 58434954 58435102 -97195018 - B1_Mus1 SINE Alu 0 148 1 6 1030 21 0 0 0 chr4 58435947 58435968 -97194152 + AT_rich Low_complexity Low_complexity 1 21 0 6 1030 683 207 75 75 chr4 58436873 58437061 -97193059 - B3 SINE B2 -6 189 2 6 1030 27 92 0 0 chr4 58437143 58437219 -97192901 + AT_rich Low_complexity Low_complexity 1 76 0 6 1030 233 224 137 8 chr4 58437219 58437336 -97192784 - Lx9 LINE L1 -19 7625 7494 6 1030 438 20 0 0 chr4 58437336 58437387 -97192733 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1030 750 316 52 41 chr4 58437446 58437713 -97192407 + B4 SINE B4 3 272 -20 6 1030 2059 272 112 33 chr4 58437746 58438506 -97191614 - Lx9 LINE L1 -175 7469 6650 6 1030 417 97 0 0 chr4 58439815 58439887 -97190233 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1030 1129 51 7 0 chr4 58439962 58440100 -97190020 + B1_Mus1 SINE Alu 5 143 -5 6 1030 843 204 85 6 chr4 58440130 58440307 -97189813 - B3 SINE B2 -25 191 1 6 1030 198 0 0 0 chr4 58440447 58440469 -97189651 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1030 309 314 54 54 chr4 58440724 58440892 -97189228 - L1MC1 LINE L1 -19 6325 6158 7 1030 1925 286 20 11 chr4 58441051 58441603 -97188517 - L1MC1 LINE L1 -310 6023 5467 7 1030 1088 243 41 121 chr4 58441619 58442031 -97188089 + MTE2a LTR MaLR 1 379 0 7 1030 719 278 66 18 chr4 58442048 58442275 -97187845 - L1MC1 LINE L1 -1874 4272 4035 7 1030 228 222 143 36 chr4 58443169 58443253 -97186867 - L1MC1 LINE L1 -2117 4029 3937 7 1030 1010 286 186 28 chr4 58443253 58443490 -97186630 - L1MC LINE L1 -2294 3852 3589 7 1030 575 39 13 0 chr4 58443490 58443568 -97186552 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1030 1321 248 165 27 chr4 58443568 58444183 -97185937 - L1MC LINE L1 -2558 3588 2865 7 1030 404 301 86 36 chr4 58444447 58444593 -97185527 + L1MD1 LINE L1 5950 6113 -129 7 1030 2269 180 91 19 chr4 58444593 58445064 -97185056 + RLTR16 LTR ERVK 1 505 0 7 1030 404 301 86 36 chr4 58445064 58445138 -97184982 + L1MD1 LINE L1 6114 6181 -61 7 1030 468 0 0 0 chr4 58445142 58445194 -97184926 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1030 399 162 0 0 chr4 58445194 58445274 -97184846 + CT-rich Low_complexity Low_complexity 2 81 0 7 1030 314 306 61 0 chr4 58445292 58445390 -97184730 - PB1D10 SINE Alu -10 107 4 7 1030 242 282 78 0 chr4 58445448 58445551 -97184569 + L1MC4 LINE L1 7000 7110 -932 7 1030 250 325 130 14 chr4 58445844 58446059 -97184061 + L1MC4 LINE L1 7513 7752 -290 7 1030 4954 158 34 8 chr4 58446073 58446495 -97183625 + L1_Mur3 LINE L1 4231 4664 -1216 7 1030 297 0 0 0 chr4 58446495 58446528 -97183592 + (TAA)n Simple_repeat Simple_repeat 1 33 0 7 1030 4954 158 34 8 chr4 58446528 58446989 -97183131 + L1_Mur3 LINE L1 4665 5136 -744 7 1030 3638 198 102 14 chr4 58446990 58447875 -97182245 + Lx6 LINE L1 6328 7276 -184 7 1030 31 26 0 0 chr4 58447881 58447919 -97182201 + AT_rich Low_complexity Low_complexity 1 38 0 7 1030 532 228 93 10 chr4 58448917 58449121 -97180999 + L1ME4a LINE L1 5638 5858 -266 7 1030 204 67 0 0 chr4 58449727 58449757 -97180363 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1030 249 312 0 0 chr4 58451207 58451289 -97178831 - MIR SINE MIR -97 179 91 7 1030 369 0 0 0 chr4 58452385 58452426 -97177694 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1030 242 132 137 4 chr4 58452681 58452744 -97177376 + ORR1D-int LTR MaLR 1220 1272 -98 7 1030 1023 118 20 14 chr4 58452982 58453128 -97176992 + B1_Mus1 SINE Alu 1 147 -1 7 1030 838 35 9 17 chr4 58453134 58453249 -97176871 + (GAAAA)n Simple_repeat Simple_repeat 4 117 0 7 1030 497 148 7 66 chr4 58453251 58453403 -97176717 + G-rich Low_complexity Low_complexity 5 147 0 7 1030 630 39 0 0 chr4 58453625 58453702 -97176418 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1030 184 309 88 0 chr4 58453817 58453885 -97176235 + MIRc SINE MIR 120 193 -75 7 1030 383 250 0 6 chr4 58454564 58454745 -97175375 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1030 606 207 0 0 chr4 58454759 58454938 -97175182 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1030 222 254 0 0 chr4 58454949 58455016 -97175104 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1030 313 286 16 0 chr4 58456136 58456199 -97173921 - ID4_ SINE ID -14 69 6 7 1030 375 250 74 22 chr4 58456210 58456345 -97173775 - B1F SINE Alu -3 146 5 7 1030 501 285 129 34 chr4 58456469 58456647 -97173473 - B3A SINE B2 -3 195 1 7 1030 255 239 0 0 chr4 58456730 58456818 -97173302 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1030 307 311 11 22 chr4 58456840 58456932 -97173188 - RSINE1 SINE B4 -2 163 73 7 1030 281 322 194 21 chr4 58457431 58457720 -97172400 + L2a LINE L2 2664 3002 -417 7 1030 212 358 82 21 chr4 58458002 58458099 -97172021 + L2a LINE L2 3302 3404 -22 7 1031 188 35 35 0 chr4 58458186 58458215 -97171905 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 7 1031 1151 201 23 41 chr4 58458233 58458451 -97171669 + B3 SINE B2 1 214 -2 7 1031 330 87 0 0 chr4 58459845 58459891 -97170229 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1031 738 14 86 0 chr4 58461051 58461191 -97168929 + (GAA)n Simple_repeat Simple_repeat 2 153 0 7 1031 1178 176 59 20 chr4 58461429 58461632 -97168488 + B3 SINE B2 1 211 -5 7 1031 308 332 137 11 chr4 58461649 58461911 -97168209 + L1MC4a LINE L1 5622 5916 -1966 7 1031 512 327 57 0 chr4 58461984 58462195 -97167925 - Tigger13a DNA MER2_type -76 695 473 7 1031 408 285 68 14 chr4 58462256 58462402 -97167718 - RSINE1 SINE B4 -4 161 8 7 1031 296 258 165 0 chr4 58462415 58462512 -97167608 - PB1D10 SINE Alu 0 117 5 7 1031 248 400 0 19 chr4 58462857 58462964 -97167156 - L2a LINE L2 -25 3401 3297 7 1031 208 206 135 14 chr4 58463119 58463193 -97166927 - L2 LINE L2 -774 2645 2563 7 1031 183 284 194 0 chr4 58463211 58463278 -97166842 - L2 LINE L2 -1393 2026 1947 7 1031 373 293 154 47 chr4 58463525 58464143 -97165977 + L1MDb LINE L1 1267 1953 -4680 7 1031 6949 50 18 0 chr4 58464206 58465031 -97165089 - L1Md_F3 LINE L1 0 6584 5745 7 1031 484 52 0 0 chr4 58465031 58465089 -97165031 + L1Md_F2 LINE L1 6173 6230 -352 7 1031 469 305 42 17 chr4 58465142 58465189 -97164931 + B4 SINE B4 168 214 -78 7 1031 1044 83 0 0 chr4 58465189 58465333 -97164787 + (GAAAA)n Simple_repeat Simple_repeat 2 145 0 7 1031 469 305 42 17 chr4 58465333 58465405 -97164715 + B4 SINE B4 215 290 -2 7 1031 389 330 76 27 chr4 58466291 58466475 -97163645 + MIRb SINE MIR 29 221 -47 7 1031 453 19 0 0 chr4 58466788 58466842 -97163278 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1031 378 287 177 45 chr4 58467684 58468085 -97162035 + L1MA4 LINE L1 5783 6236 -64 7 1031 1516 79 5 0 chr4 58468136 58468326 -97161794 - B2_Mm1t SINE B2 -2 191 1 7 1031 1474 134 22 0 chr4 58468398 58468630 -97161490 - ORR1A1 LTR MaLR -10 336 100 7 1031 24 32 0 0 chr4 58468831 58468862 -97161258 + AT_rich Low_complexity Low_complexity 1 31 0 7 1031 25 0 0 0 chr4 58469090 58469115 -97161005 + AT_rich Low_complexity Low_complexity 1 25 0 7 1031 483 18 0 0 chr4 58470390 58470446 -97159674 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1031 201 74 0 0 chr4 58470446 58470473 -97159647 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1031 2891 123 20 86 chr4 58471216 58471715 -97158405 + RMER4A LTR ERVK 1 466 0 7 1031 339 89 0 0 chr4 58471740 58471796 -97158324 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 1031 474 101 0 0 chr4 58472430 58472499 -97157621 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1031 1180 131 75 0 chr4 58472499 58472713 -97157407 - Lx9 LINE L1 -61 7583 7354 7 1031 216 333 65 32 chr4 58472755 58472848 -97157272 - L2b LINE L2 -330 3045 2950 7 1031 282 160 0 0 chr4 58473069 58473119 -97157001 + (CCA)n Simple_repeat Simple_repeat 1 50 0 7 1031 288 0 0 0 chr4 58473954 58473986 -97156134 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1031 255 268 268 0 chr4 58474173 58474285 -97155835 + RSINE1 SINE B4 8 149 -16 7 1031 347 182 13 0 chr4 58474551 58474628 -97155492 + CT-rich Low_complexity Low_complexity 1 78 0 7 1031 23 0 0 0 chr4 58475409 58475432 -97154688 + AT_rich Low_complexity Low_complexity 1 23 0 7 1031 614 277 58 62 chr4 58475433 58475725 -97154395 - B4A SINE B4 0 292 2 7 1031 332 22 22 0 chr4 58475772 58475817 -97154303 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1031 186 133 0 0 chr4 58476304 58476334 -97153786 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1031 387 132 0 0 chr4 58476525 58476593 -97153527 + (ATG)n Simple_repeat Simple_repeat 2 69 0 7 1031 450 0 0 0 chr4 58476594 58476644 -97153476 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1031 424 260 142 47 chr4 58476728 58476918 -97153202 + MLT1E1A LTR MaLR 108 315 -365 7 1031 358 395 31 26 chr4 58476950 58477176 -97152944 + MLT1E1A LTR MaLR 428 654 0 7 1031 29 0 0 0 chr4 58478145 58478174 -97151946 + AT_rich Low_complexity Low_complexity 1 29 0 7 1031 722 180 43 0 chr4 58478390 58478529 -97151591 - B3 SINE B2 -11 205 61 7 1031 354 285 76 56 chr4 58478650 58478847 -97151273 + MER119 DNA MER1_type 132 332 -251 7 1031 3364 58 5 5 chr4 58478949 58479349 -97150771 + MTB LTR MaLR 1 400 0 7 1031 192 380 0 44 chr4 58479812 58479925 -97150195 - MIRm SINE MIR -116 160 53 7 1031 725 246 66 5 chr4 58479986 58480182 -97149938 + ORR1D2 LTR MaLR 163 370 0 7 1031 225 227 71 10 chr4 58480270 58480368 -97149752 + (CATATA)n Simple_repeat Simple_repeat 5 108 0 7 1031 208 233 62 31 chr4 58480717 58480802 -97149318 - MIRb SINE MIR -26 242 157 7 1031 1268 212 51 119 chr4 58480820 58481190 -97148930 + ORR1E LTR MaLR 13 357 -2 7 1031 336 111 0 0 chr4 58481769 58481832 -97148288 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 7 1031 266 287 60 9 chr4 58482044 58482160 -97147960 - MER5A DNA MER1_type -63 126 5 7 1031 219 36 0 0 chr4 58482523 58482551 -97147569 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1031 30 27 0 0 chr4 58482875 58482912 -97147208 + AT_rich Low_complexity Low_complexity 1 37 0 7 1031 450 118 21 11 chr4 58483791 58483885 -97146235 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 1031 584 132 35 24 chr4 58483903 58484073 -97146047 + (CA)n Simple_repeat Simple_repeat 2 173 0 7 1031 435 304 54 0 chr4 58484790 58484902 -97145218 + B1F SINE Alu 32 149 0 7 1031 1177 230 140 61 chr4 58485139 58485482 -97144638 - ORR1D2 LTR MaLR 0 370 1 7 1031 563 260 40 14 chr4 58486285 58486433 -97143687 + B3 SINE B2 1 152 -64 7 1031 679 132 0 22 chr4 58486709 58486848 -97143272 + (TAGA)n Simple_repeat Simple_repeat 3 138 0 7 1031 208 333 65 56 chr4 58487225 58487333 -97142787 + L2c LINE L2 3278 3386 -1 7 1031 1362 211 39 27 chr4 58487761 58488093 -97142027 + ORR1D2 LTR MaLR 6 341 -29 7 1031 1276 61 0 0 chr4 58488093 58488241 -97141879 + B1_Mus1 SINE Alu 1 148 0 7 1031 267 256 22 97 chr4 58488241 58488272 -97141848 + ORR1D2 LTR MaLR 350 379 0 7 1031 231 373 9 52 chr4 58491078 58491194 -97138926 + MIRb SINE MIR 3 113 -155 7 1031 515 256 0 57 chr4 58491678 58491802 -97138318 + PB1D10 SINE Alu 1 117 0 7 1031 351 113 0 0 chr4 58491935 58491988 -97138132 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 7 1031 6794 193 50 39 chr4 58493569 58494746 -97135374 + Lx7 LINE L1 6271 7474 -222 7 1031 597 14 0 0 chr4 58494746 58494816 -97135304 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1031 6794 193 50 39 chr4 58494816 58495049 -97135071 + Lx7 LINE L1 7475 7696 0 7 1031 202 75 75 0 chr4 58495108 58495148 -97134972 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1031 446 246 141 37 chr4 58497594 58497729 -97132391 + B1F SINE Alu 1 149 0 7 1031 389 330 13 39 chr4 58497730 58498039 -97132081 + Lx9 LINE L1 7337 7637 -7 8 1031 1629 292 97 12 chr4 58498220 58498826 -97131294 + Lx8 LINE L1 6808 7465 -8 8 1031 234 0 0 0 chr4 58500108 58500134 -97129986 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1 1031 238 318 185 0 chr4 58501572 58501761 -97128359 + L2 LINE L2 691 914 -2505 2 1031 733 246 82 27 chr4 58502074 58502366 -97127754 - MTE2b LTR MaLR 0 379 72 3 1031 333 313 69 0 chr4 58502441 58502572 -97127548 - MLT1D LTR MaLR -363 142 3 4 1031 914 196 103 0 chr4 58503023 58503227 -97126893 + URR1B DNA MER1_type 1 225 0 5 1031 652 252 14 0 chr4 58503518 58503665 -97126455 + MTEb LTR MaLR 231 379 0 6 1031 578 144 29 50 chr4 58503670 58503813 -97126307 + B1_Mus1 SINE Alu 5 148 0 7 1031 192 200 0 0 chr4 58503813 58503868 -97126252 + A-rich Low_complexity Low_complexity 1 55 0 8 1031 234 0 0 0 chr4 58505176 58505202 -97124918 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1031 746 220 20 0 chr4 58505207 58505357 -97124763 - B4 SINE B4 -18 274 122 1 1031 225 216 26 26 chr4 58506019 58506095 -97124025 + L1MEd LINE L1 51 126 -5993 1 1031 211 156 44 0 chr4 58506591 58506636 -97123484 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1031 205 175 30 45 chr4 58506613 58506679 -97123441 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 1 1031 314 302 117 57 chr4 58506713 58507029 -97123091 + L1M5 LINE L1 5055 5389 -757 1 1031 553 244 0 8 chr4 58507684 58507812 -97122308 - B1_Mur1 SINE Alu -18 131 5 1 1031 475 294 23 81 chr4 58508257 58508431 -97121689 + RSINE1 SINE B4 2 165 0 1 1031 648 150 0 162 chr4 58508507 58508674 -97121446 - B1_Mur2 SINE Alu 0 149 10 1 1031 301 312 0 12 chr4 58511374 58511455 -97118665 + polypurine Low_complexity Low_complexity 4 83 0 1 1031 186 43 0 0 chr4 58511967 58511990 -97118130 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 1 1031 468 0 0 0 chr4 58513096 58513148 -97116972 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1031 310 281 48 86 chr4 58513333 58513362 -97116758 - B2_Mm2 SINE B2 -15 180 155 2 1031 456 19 0 0 chr4 58513362 58513415 -97116705 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1031 595 293 13 0 chr4 58513415 58513572 -97116548 - B3A SINE B2 -39 159 1 2 1031 21 0 0 0 chr4 58514273 58514294 -97115826 + AT_rich Low_complexity Low_complexity 1 21 0 2 1031 321 264 199 15 chr4 58514297 58514428 -97115692 - MER106B DNA MER1_type -904 155 1 2 1031 513 0 0 0 chr4 58515066 58515123 -97114997 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1031 1305 170 13 13 chr4 58515419 58515645 -97114475 - URR1A DNA MER1_type 0 226 1 2 1031 525 16 0 0 chr4 58515863 58515925 -97114195 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1031 1242 223 122 21 chr4 58516071 58516406 -97113714 + ORR1D2 LTR MaLR 2 370 0 2 1031 654 210 36 0 chr4 58518619 58518757 -97111363 + B1_Mur4 SINE Alu 1 143 -7 3 1031 346 210 0 0 chr4 58518917 58518979 -97111141 + ID_B1 SINE B4 90 151 -73 3 1031 293 279 46 11 chr4 58518979 58519004 -97111116 + B1F SINE Alu 9 98 -51 3 1031 391 277 14 34 chr4 58519014 58519160 -97110960 + GA-rich Low_complexity Low_complexity 3 145 0 3 1031 2194 102 12 56 chr4 58520095 58520437 -97109683 + ORR1A4 LTR MaLR 3 329 0 3 1031 212 373 57 25 chr4 58520549 58520706 -97109414 - MIRb SINE MIR -89 179 18 3 1031 293 269 385 0 chr4 58520736 58520866 -97109254 + B4A SINE B4 2 181 -111 3 1031 222 227 0 0 chr4 58520919 58520963 -97109157 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 3 1031 428 248 108 54 chr4 58520983 58521149 -97108971 + B4A SINE B4 118 292 0 3 1031 29 0 0 0 chr4 58521154 58521183 -97108937 + AT_rich Low_complexity Low_complexity 1 29 0 3 1031 22 0 0 0 chr4 58521296 58521318 -97108802 + AT_rich Low_complexity Low_complexity 1 22 0 4 1031 654 252 8 0 chr4 58522504 58522635 -97107485 + ID_B1 SINE B4 81 212 -12 4 1031 243 0 0 0 chr4 58524341 58524368 -97105752 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1031 825 317 174 6 chr4 58524634 58525140 -97104980 + L1MB2 LINE L1 5298 5888 -283 4 1031 934 208 66 0 chr4 58525288 58525485 -97104635 + B3 SINE B2 1 210 -6 4 1031 608 111 10 0 chr4 58525693 58525792 -97104328 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 4 1031 2242 48 0 118 chr4 58525792 58526123 -97103997 + RLTR10B LTR ERVK 1 292 0 4 1031 405 39 0 0 chr4 58526153 58526204 -97103916 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1031 617 36 0 0 chr4 58526778 58526861 -97103259 + B1_Mm SINE Alu 65 147 0 4 1031 312 27 0 0 chr4 58527346 58527383 -97102737 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4 1031 231 188 0 0 chr4 58527383 58527431 -97102689 + GA-rich Low_complexity Low_complexity 2 49 0 5 1031 224 224 224 0 chr4 58527548 58527615 -97102505 + ID4_ SINE ID 2 83 0 5 1031 232 328 150 21 chr4 58527621 58527948 -97102172 + L1MEc LINE L1 231 599 -5801 5 1031 443 286 43 18 chr4 58528108 58528272 -97101848 + MTE-int LTR MaLR 775 942 -638 5 1031 2109 114 49 14 chr4 58528273 58528620 -97101500 + RLTR15 LTR ERVK 1 359 0 5 1031 351 0 0 0 chr4 58530063 58530102 -97100018 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1031 464 95 0 12 chr4 58530102 58530187 -97099933 + (GA)n Simple_repeat Simple_repeat 2 85 0 5 1031 787 264 43 39 chr4 58530190 58530446 -97099674 - B4 SINE B4 -29 263 7 5 1031 283 197 14 57 chr4 58531111 58531181 -97098939 + ID4_ SINE ID 4 70 -13 5 1031 763 247 64 6 chr4 58531972 58532143 -97097977 + B3A SINE B2 1 181 -17 5 1031 238 250 56 0 chr4 58532159 58532231 -97097889 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 6 1031 24 0 0 0 chr4 58532232 58532256 -97097864 + AT_rich Low_complexity Low_complexity 1 24 0 6 1031 209 325 48 0 chr4 58532757 58532840 -97097280 + MER5A DNA MER1_type 71 157 -32 6 1031 268 325 29 41 chr4 58532873 58533043 -97097077 - MER5A DNA MER1_type -5 184 17 6 1031 216 0 0 0 chr4 58533136 58533160 -97096960 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 6 1031 234 0 0 0 chr4 58533753 58533779 -97096341 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1031 445 284 136 52 chr4 58534343 58534638 -97095482 - MLT1A0 LTR MaLR -33 341 13 6 1031 702 277 76 4 chr4 58535436 58535661 -97094459 + MTEa LTR MaLR 19 259 -120 6 1031 237 135 0 0 chr4 58535693 58535730 -97094390 + MLT2C1 LTR ERVL 524 560 -3 6 1031 257 289 0 26 chr4 58535904 58535982 -97094138 - ID4_ SINE ID -7 76 1 6 1031 195 69 0 0 chr4 58536988 58537017 -97093103 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1031 526 256 74 60 chr4 58537568 58537932 -97092188 + ORR1E LTR MaLR 1 369 -10 7 1031 321 68 0 0 chr4 58538453 58538497 -97091623 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 7 1031 21 0 0 0 chr4 58539043 58539064 -97091056 + AT_rich Low_complexity Low_complexity 1 21 0 7 1031 551 252 30 15 chr4 58539120 58539253 -97090867 + B1F SINE Alu 6 140 -9 7 1031 4135 36 26 2 chr4 58539253 58539750 -97090370 + L1Md_F3 LINE L1 6061 6569 -15 7 1031 267 279 157 85 chr4 58539750 58539776 -97090344 + FAM SINE Alu 294 311 0 7 1031 309 109 0 0 chr4 58540122 58540168 -97089952 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1031 474 96 0 0 chr4 58540443 58540516 -97089604 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 7 1031 274 296 38 46 chr4 58540903 58541034 -97089086 + L1M5 LINE L1 5606 5735 -2147 7 1031 610 282 76 6 chr4 58541101 58541272 -97088848 + B3 SINE B2 4 186 -30 8 1031 530 217 30 71 chr4 58542155 58542324 -97087796 + RSINE1 SINE B4 3 164 -1 8 1031 405 0 0 0 chr4 58542324 58542369 -97087751 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1031 301 280 143 8 chr4 58542421 58542554 -97087566 + L1MEd LINE L1 948 1098 -5021 8 1031 1659 91 0 0 chr4 58542557 58542789 -97087331 + L1_Mus4 LINE L1 6405 6636 0 8 1031 647 194 29 0 chr4 58542897 58543036 -97087084 + B1F SINE Alu 7 149 0 8 1031 284 287 109 49 chr4 58544162 58544345 -97085775 - L3 LINE CR1 -15 4474 4281 8 1031 376 222 0 0 chr4 58544391 58544463 -97085657 + ID4_ SINE ID 7 78 -5 8 1031 240 35 0 0 chr4 58544463 58544492 -97085628 + (TAA)n Simple_repeat Simple_repeat 2 30 0 8 1031 895 247 138 54 chr4 58544944 58545372 -97084748 - RCHARR1 DNA MER1_type -320 654 191 8 1031 549 80 0 0 chr4 58545585 58545660 -97084460 + (GA)n Simple_repeat Simple_repeat 1 75 0 9 1031 693 92 0 0 chr4 58545660 58545758 -97084362 + (GAA)n Simple_repeat Simple_repeat 3 100 0 9 1031 262 163 0 39 chr4 58545966 58546017 -97084103 + (CAA)n Simple_repeat Simple_repeat 1 49 0 9 1031 690 225 0 0 chr4 58546017 58546195 -97083925 + (TAA)n Simple_repeat Simple_repeat 2 179 0 9 1031 556 252 0 0 chr4 58548161 58548276 -97081844 + PB1D7 SINE Alu 1 115 -5 9 1031 1217 48 0 7 chr4 58549884 58550031 -97080089 + B1_Mus1 SINE Alu 2 147 -1 9 1031 207 0 0 0 chr4 58550061 58550084 -97080036 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1031 2544 160 5 7 chr4 58550128 58550550 -97079570 - MTC LTR MaLR 0 421 1 9 1031 750 23 0 0 chr4 58552190 58552278 -97077842 + (GGGAA)n Simple_repeat Simple_repeat 4 91 0 9 1031 458 270 9 0 chr4 58552489 58552600 -97077520 + ID_B1 SINE B4 79 190 -34 9 1031 270 176 0 0 chr4 58553280 58553331 -97076789 + A-rich Low_complexity Low_complexity 1 51 0 1 1031 696 280 74 40 chr4 58553732 58554030 -97076090 + MER2 DNA MER2_type 38 345 0 1 1031 238 235 58 14 chr4 58554352 58554421 -97075699 - MADE2 DNA Mariner -7 73 2 1 1031 664 324 69 7 chr4 58554667 58554941 -97075179 + B4A SINE B4 2 292 0 1 1031 1155 49 0 14 chr4 58555786 58555931 -97074189 + B1_Mus2 SINE Alu 5 147 0 1 1031 21 71 0 0 chr4 58556413 58556455 -97073665 + AT_rich Low_complexity Low_complexity 1 42 0 1 1031 180 283 19 0 chr4 58556459 58556512 -97073608 - L2a LINE L2 -31 3395 3342 1 1031 23 68 0 0 chr4 58556908 58556952 -97073168 + AT_rich Low_complexity Low_complexity 1 44 0 1 1031 372 308 0 71 chr4 58557083 58557209 -97072911 - ID_B1 SINE B4 -24 200 84 1 1031 289 230 17 15 chr4 58557944 58558025 -97072095 - PB1D10 SINE Alu -41 86 5 1 1031 535 214 278 0 chr4 58558181 58558354 -97071766 - ID_B1 SINE B4 -1 223 3 1 1031 194 116 0 23 chr4 58561194 58561238 -97068882 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 1 1031 422 236 51 18 chr4 58561240 58561368 -97068752 + B1F SINE Alu 4 140 -9 1 1031 269 236 24 30 chr4 58563646 58563812 -97066308 + GA-rich Low_complexity Low_complexity 3 167 0 1 1031 225 245 0 0 chr4 58563825 58563874 -97066246 + GA-rich Low_complexity Low_complexity 2 50 0 1 1031 642 118 0 0 chr4 58564477 58564579 -97065541 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1 1031 189 0 0 0 chr4 58564580 58564601 -97065519 + (CAGG)n Simple_repeat Simple_repeat 1 21 0 1 1031 23 33 0 0 chr4 58565015 58565045 -97065075 + AT_rich Low_complexity Low_complexity 1 30 0 1 1031 246 229 14 41 chr4 58565472 58565545 -97064575 + GA-rich Low_complexity Low_complexity 2 72 0 1 1031 453 111 28 0 chr4 58567744 58567816 -97062304 + B1_Mus1 SINE Alu 1 74 -74 1 1031 268 286 0 0 chr4 58568078 58568134 -97061986 + ID2 SINE ID 25 80 -3 1 1031 477 267 0 0 chr4 58568700 58568876 -97061244 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1031 473 252 6 26 chr4 58568838 58569195 -97060925 + (CATA)n Simple_repeat Simple_repeat 1 349 0 1 1031 288 259 48 97 chr4 58569571 58569695 -97060425 - B1F SINE Alu -19 130 13 1 1031 3214 159 38 10 chr4 58570044 58570623 -97059497 + RLTR17 LTR ERVK 98 692 0 1 1031 583 48 0 24 chr4 58570917 58571002 -97059118 + (GGA)n Simple_repeat Simple_repeat 3 85 0 1 1031 34 24 0 0 chr4 58571520 58571561 -97058559 + AT_rich Low_complexity Low_complexity 1 41 0 1 1031 455 278 17 25 chr4 58571660 58571778 -97058342 + PB1D10 SINE Alu 1 117 0 1 1031 315 0 0 0 chr4 58571859 58571894 -97058226 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1031 1127 76 6 0 chr4 58571895 58572052 -97058068 - B2_Mm2 SINE B2 -37 158 1 1 1031 333 0 0 0 chr4 58572223 58572260 -97057860 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 1 1031 241 370 0 0 chr4 58572260 58572333 -97057787 - ID2 SINE ID -4 79 7 1 1031 257 181 108 27 chr4 58572597 58572671 -97057449 + RLTR25B LTR ERVK 430 509 -519 1 1031 338 190 9 83 chr4 58572605 58572618 -97057502 + ID_B1 SINE B4 124 223 0 1 1031 736 11 11 0 chr4 58572618 58572713 -97057407 + B1_Mus2 SINE Alu 52 147 0 1 1031 516 159 223 76 chr4 58573240 58573424 -97056696 - B3 SINE B2 -4 212 2 1 1031 2659 37 12 27 chr4 58573708 58574040 -97056080 + IAPLTR2b LTR ERVK 1 327 0 1 1031 335 301 196 0 chr4 58574664 58574797 -97055323 + RSINE1 SINE B4 6 164 -1 1 1031 648 292 60 11 chr4 58574828 58575109 -97055011 + L1ME2 LINE L1 5869 6160 -284 1 1031 495 216 72 0 chr4 58575129 58575226 -97054894 - PB1D10 SINE Alu -10 107 4 1 1031 229 315 108 23 chr4 58575754 58575884 -97054236 + MamGypLTR1c LTR Gypsy 300 440 -363 1 1031 364 198 53 95 chr4 58575970 58576065 -97054055 + ID_B1 SINE B4 134 224 0 1 1031 936 270 25 100 chr4 58576528 58576849 -97053271 - MTEa LTR MaLR -4 375 79 1 1031 257 333 134 47 chr4 58577307 58577584 -97052536 + LTR16A LTR ERVL 146 446 -5 1 1031 285 29 0 0 chr4 58577998 58578032 -97052088 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1031 550 350 35 26 chr4 58578056 58578367 -97051753 + MLT1A0 LTR MaLR 10 323 -42 1 1031 443 194 0 10 chr4 58578612 58578711 -97051409 + GA-rich Low_complexity Low_complexity 4 101 0 1 1031 286 254 0 0 chr4 58578802 58578861 -97051259 - ID4_ SINE ID -19 64 6 1 1031 312 92 351 27 chr4 58579031 58579142 -97050978 - B2_Mm2 SINE B2 -2 193 47 1 1031 1270 70 47 0 chr4 58579174 58579345 -97050775 - B2_Mm1t SINE B2 -14 179 1 1 1031 1250 210 116 6 chr4 58579353 58579698 -97050422 - ORR1C2 LTR MaLR 0 384 2 1 1031 3033 46 0 0 chr4 58580157 58580523 -97049597 + L1Md_T LINE L1 6217 6582 0 1 1031 21 57 0 0 chr4 58580579 58580614 -97049506 + AT_rich Low_complexity Low_complexity 1 35 0 1 1031 1308 231 61 49 chr4 58580650 58580996 -97049124 + MTD LTR MaLR 15 364 -55 1 1031 210 37 0 0 chr4 58581000 58581027 -97049093 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1031 360 94 0 0 chr4 58581220 58581273 -97048847 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1031 2891 21 42 0 chr4 58581824 58582156 -97047964 - ORR1A0 LTR MaLR 0 346 1 1 1031 278 292 84 50 chr4 58582227 58582346 -97047774 - MIR SINE MIR -49 213 91 1 1031 212 322 102 48 chr4 58582488 58582510 -97047610 - B4A SINE B4 -47 245 223 1 1031 342 0 0 0 chr4 58582510 58582548 -97047572 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1031 532 283 43 6 chr4 58582548 58582711 -97047409 - ID_B1 SINE B4 -70 222 51 1 1031 3593 23 0 0 chr4 58583191 58583587 -97046533 + MTA_Mm LTR MaLR 1 396 0 1 1031 198 0 0 0 chr4 58583605 58583627 -97046493 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1 1031 357 321 0 89 chr4 58583668 58583791 -97046329 + RSINE1 SINE B4 54 165 0 1 1031 573 15 0 0 chr4 58585156 58585222 -97044898 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1031 452 134 10 0 chr4 58586045 58586142 -97043978 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 1031 531 0 0 0 chr4 58586145 58586204 -97043916 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 1 1031 412 237 0 0 chr4 58586517 58586593 -97043527 - ID4_ SINE ID -5 78 3 1 1031 635 252 76 0 chr4 58586714 58586912 -97043208 + Tigger7 DNA MER2_type 2270 2482 -9 1 1031 686 162 0 11 chr4 58587424 58587599 -97042521 + (TCTG)n Simple_repeat Simple_repeat 2 174 0 1 1031 600 205 0 0 chr4 58587600 58587912 -97042208 + (TG)n Simple_repeat Simple_repeat 1 312 0 1 1031 423 195 0 0 chr4 58587923 58588041 -97042079 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1031 546 299 0 19 chr4 58588049 58588209 -97041911 - RSINE1 SINE B4 0 165 9 1 1031 234 281 158 0 chr4 58588519 58588601 -97041519 - Lx8 LINE L1 -1702 5771 5677 1 1031 259 321 45 27 chr4 58588731 58588843 -97041277 - MLT1A1 LTR MaLR -12 396 249 1 1031 377 281 8 26 chr4 58588928 58589045 -97041075 - MLT1A1 LTR MaLR -252 156 42 1 1032 312 27 0 0 chr4 58590436 58590473 -97039647 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1032 222 231 19 0 chr4 58590836 58590888 -97039232 + MER5A DNA MER1_type 137 189 0 1 1032 663 13 0 0 chr4 58590966 58591042 -97039078 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1 1032 496 79 24 89 chr4 58591102 58591405 -97038715 + CT-rich Low_complexity Low_complexity 1 283 0 1 1032 652 184 7 28 chr4 58592159 58592304 -97037816 + ID_B1 SINE B4 80 221 -3 1 1032 1368 91 0 0 chr4 58592596 58592882 -97037238 + (CA)n Simple_repeat Simple_repeat 1 286 0 1 1032 23 0 0 0 chr4 58593487 58593510 -97036610 + AT_rich Low_complexity Low_complexity 1 23 0 1 1032 636 103 91 45 chr4 58594527 58594659 -97035461 - B1_Mur4 SINE Alu 0 150 13 1 1032 243 237 61 130 chr4 58594562 58594693 -97035427 - MT2B LTR ERVL -344 257 136 1 1032 268 121 34 17 chr4 58595186 58595245 -97034875 + G-rich Low_complexity Low_complexity 6 65 0 1 1032 1077 199 65 84 chr4 58595304 58595671 -97034449 - Lx7 LINE L1 -4 7692 7333 1 1032 652 160 20 9 chr4 58596512 58596668 -97033452 + ORR1D1 LTR MaLR 1 163 -207 1 1032 213 222 0 0 chr4 58597638 58597701 -97032419 + A-rich Low_complexity Low_complexity 1 63 0 1 1032 225 0 0 0 chr4 58597815 58597840 -97032280 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1032 273 253 0 0 chr4 58597931 58598018 -97032102 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1032 495 33 0 0 chr4 58598252 58598313 -97031807 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1032 1112 221 21 46 chr4 58599486 58599766 -97030354 + Lx9 LINE L1 6938 7210 -434 1 1032 244 243 86 0 chr4 58599811 58599881 -97030239 + Lx9 LINE L1 7391 7466 -178 1 1032 423 0 0 0 chr4 58599882 58599929 -97030191 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1032 1839 182 104 10 chr4 58601053 58601436 -97028684 + MTD LTR MaLR 1 419 0 1 1032 494 220 0 6 chr4 58602392 58602570 -97027550 + GA-rich Low_complexity Low_complexity 1 177 0 1 1032 243 125 0 0 chr4 58603131 58603171 -97026949 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1032 390 296 94 63 chr4 58603171 58603362 -97026758 + B4A SINE B4 86 282 -10 1 1032 284 204 186 39 chr4 58603455 58603557 -97026563 + PB1D10 SINE Alu 1 117 0 1 1032 2209 102 18 58 chr4 58603618 58603961 -97026159 + ORR1A4 LTR MaLR 1 329 0 1 1032 223 270 122 11 chr4 58604425 58604515 -97025605 - MIRb SINE MIR -64 204 105 1 1032 210 289 0 0 chr4 58605062 58605107 -97025013 + G-rich Low_complexity Low_complexity 2 46 0 1 1032 687 139 0 0 chr4 58605114 58605229 -97024891 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 1032 251 274 48 0 chr4 58605229 58605291 -97024829 + RSINE1 SINE B4 82 146 -19 1 1032 315 0 0 0 chr4 58605308 58605343 -97024777 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1032 641 167 51 0 chr4 58605384 58605522 -97024598 + L1_Mus1 LINE L1 6421 6565 -2 2 1032 379 120 51 39 chr4 58605530 58605608 -97024512 + RMER1B Other Other 988 1066 0 2 1032 22966 96 14 44 chr4 58605666 58609812 -97020308 + L1Md_F2 LINE L1 264 4290 -1593 2 1032 326 51 0 0 chr4 58609810 58609849 -97020271 + L1Md_F2 LINE L1 5642 5680 -902 2 1032 999 24 0 16 chr4 58609849 58609978 -97020142 - L1Md_F3 LINE L1 -16 6568 6442 2 1032 7538 47 2 1 chr4 58609974 58610885 -97019235 + L1Md_F2 LINE L1 5671 6582 0 2 1032 7102 105 2 7 chr4 58610879 58611932 -97018188 + MusHAL1 LINE L1 1380 2427 -285 2 1032 5677 63 8 0 chr4 58611934 58612651 -97017469 + L1_Mus1 LINE L1 5845 6567 0 2 1032 768 22 0 0 chr4 58612858 58612897 -97017223 + (TTC)n Simple_repeat Simple_repeat 1 39 0 2 1032 1497 28 0 0 chr4 58612897 58613075 -97017045 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1032 768 22 0 0 chr4 58613075 58613127 -97016993 + (TTC)n Simple_repeat Simple_repeat 3 54 0 2 1032 1095 57 49 7 chr4 58613169 58613311 -97016809 - B1_Mus1 SINE Alu 0 148 1 2 1032 630 262 0 13 chr4 58614181 58614332 -97015788 + B1F SINE Alu 1 149 0 2 1032 2310 202 16 35 chr4 58614354 58614867 -97015253 + RLTR16 LTR ERVK 1 503 -2 2 1032 7510 209 32 42 chr4 58614892 58616472 -97013648 - Lx6 LINE L1 0 7460 5897 2 1032 240 35 0 0 chr4 58616659 58616688 -97013432 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2 1032 463 248 71 0 chr4 58616691 58616804 -97013316 - B1_Mur1 SINE Alu -15 134 14 2 1032 226 208 218 13 chr4 58616800 58616878 -97013242 + MLT1A1 LTR MaLR 309 402 -6 2 1032 362 100 17 0 chr4 58617939 58617999 -97012121 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1032 318 266 30 142 chr4 58618263 58618405 -97011715 + MTEb LTR MaLR 203 322 -57 2 1032 2402 148 23 0 chr4 58618405 58618790 -97011330 + ORR1B1 LTR MaLR 1 394 0 2 1032 318 266 30 142 chr4 58618790 58618844 -97011276 + MTEb LTR MaLR 323 377 -2 2 1032 681 101 0 0 chr4 58619251 58619350 -97010770 + (GAAA)n Simple_repeat Simple_repeat 3 101 0 2 1032 336 83 0 0 chr4 58619407 58619455 -97010665 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1032 249 231 0 97 chr4 58619923 58619995 -97010125 + PB1D10 SINE Alu 52 116 -1 2 1032 180 322 64 75 chr4 58620265 58620359 -97009761 - MER5B DNA MER1_type -85 93 1 2 1032 3675 202 46 49 chr4 58621228 58621811 -97008309 - L1_Rod LINE L1 -885 4962 4377 2 1032 864 119 150 0 chr4 58621811 58621971 -97008149 + B2_Mm2 SINE B2 5 188 -7 2 1032 3514 164 7 20 chr4 58621971 58622568 -97007552 + Lx LINE L1 6066 6654 0 2 1032 3675 202 46 49 chr4 58622568 58622942 -97007178 - L1_Rod LINE L1 -1471 4376 4008 2 1032 1487 189 50 81 chr4 58622954 58623409 -97006711 + Lx9 LINE L1 7203 7643 -1 2 1032 212 229 0 0 chr4 58623488 58623536 -97006584 + C-rich Low_complexity Low_complexity 1 48 0 2 1032 207 0 0 0 chr4 58628908 58628931 -97001189 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1032 1241 238 35 67 chr4 58629065 58629455 -97000665 - MTE2a LTR MaLR -2 372 1 2 1032 267 31 0 0 chr4 58629532 58629564 -97000556 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1032 470 318 23 67 chr4 58629585 58629885 -97000235 + B4A SINE B4 2 288 -4 2 1032 624 298 9 36 chr4 58630537 58630760 -96999360 + MLT1B LTR MaLR 166 382 -8 2 1032 201 286 18 18 chr4 58631365 58631422 -96998698 + MIR SINE MIR 35 91 -171 2 1032 231 291 0 24 chr4 58631994 58632166 -96997954 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 1032 3296 43 8 0 chr4 58632210 58632603 -96997517 + MTA_Mm LTR MaLR 1 396 0 2 1032 1258 41 0 0 chr4 58632612 58632759 -96997361 + B1_Mus2 SINE Alu 1 147 0 2 1032 250 45 45 0 chr4 58632759 58632803 -96997317 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 2 1032 21 36 0 0 chr4 58632827 58632855 -96997265 + AT_rich Low_complexity Low_complexity 1 28 0 2 1032 3333 177 161 71 chr4 58633162 58633990 -96996130 + RMER19B LTR ERVK 1 902 0 2 1032 408 354 56 17 chr4 58634028 58634387 -96995733 - HAL1 LINE L1 -734 1773 1401 2 1032 386 289 53 0 chr4 58634439 58634553 -96995567 - PB1D9 SINE Alu 0 120 1 2 1032 180 0 0 0 chr4 58634574 58634594 -96995526 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1032 298 214 12 12 chr4 58634662 58634747 -96995373 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1032 520 289 45 35 chr4 58634781 58634982 -96995138 - Lx8 LINE L1 -55 7418 7216 2 1032 210 81 0 51 chr4 58635803 58635842 -96994278 + (CCCCCA)n Simple_repeat Simple_repeat 4 40 0 2 1032 259 294 10 19 chr4 58636027 58636131 -96993989 + HAL1 LINE L1 139 241 -2266 2 1032 603 140 0 36 chr4 58636320 58636431 -96993689 + B1_Mus2 SINE Alu 41 147 0 2 1032 607 162 64 19 chr4 58636470 58636618 -96993502 + B1_Mur4 SINE Alu 1 147 -1 2 1032 486 49 0 0 chr4 58636635 58636696 -96993424 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 2 1032 969 174 108 11 chr4 58637015 58637201 -96992919 + B3 SINE B2 4 207 -9 2 1032 23 33 0 0 chr4 58637253 58637283 -96992837 + AT_rich Low_complexity Low_complexity 1 30 0 2 1032 198 0 0 0 chr4 58638286 58638308 -96991812 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1032 654 211 25 44 chr4 58638905 58638973 -96991147 + ID SINE ID 15 79 -145 2 1032 408 240 28 19 chr4 58638973 58639079 -96991041 + PB1D10 SINE Alu 1 107 -10 2 1032 263 213 0 0 chr4 58639336 58639383 -96990737 + tRNA-Ala-GCY_ tRNA tRNA 21 67 -8 2 1032 239 281 0 50 chr4 58639383 58639396 -96990724 + ID4_ SINE ID 27 83 0 2 1032 288 229 0 0 chr4 58640578 58640639 -96989481 - B1F1 SINE Alu -88 61 1 2 1032 389 258 0 0 chr4 58640834 58640923 -96989197 - ID_B1 SINE B4 -15 209 121 2 1032 7456 48 8 4 chr4 58640944 58641855 -96988265 + L1Md_F2 LINE L1 5657 6570 -12 2 1032 1244 250 8 8 chr4 58641863 58642125 -96987995 - B4A SINE B4 -30 262 1 2 1032 287 286 81 54 chr4 58642152 58642300 -96987820 - MLT1A1 LTR MaLR -256 152 1 2 1032 681 176 37 33 chr4 58642678 58642895 -96987225 - ORR1C2 LTR MaLR -59 325 2 2 1032 405 339 77 46 chr4 58644868 58645128 -96984992 - ERVL-E-int LTR ERVL -1537 4130 3863 2 1032 658 187 251 45 chr4 58645480 58645659 -96984461 + B3 SINE B2 1 216 0 2 1032 2303 169 29 12 chr4 58646016 58646429 -96983691 + MTC LTR MaLR 2 421 0 2 1032 351 0 0 0 chr4 58646542 58646581 -96983539 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1032 462 124 0 0 chr4 58646581 58646669 -96983451 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1032 312 91 0 0 chr4 58646679 58646723 -96983397 + (CACAG)n Simple_repeat Simple_repeat 1 44 0 2 1032 453 273 48 96 chr4 58646967 58647133 -96982987 + RSINE1 SINE B4 8 165 0 2 1032 1267 304 143 25 chr4 58647302 58647964 -96982156 + Lx8 LINE L1 5446 6216 -1257 2 1032 1206 182 259 143 chr4 58647964 58648202 -96981918 - MT2A LTR ERVL -4 529 195 2 1032 276 30 0 0 chr4 58648202 58648235 -96981885 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1032 1206 182 259 143 chr4 58648235 58648470 -96981650 - MT2A LTR ERVL -339 194 1 2 1032 1267 361 106 34 chr4 58648470 58649113 -96981007 + Lx8 LINE L1 6217 6875 -598 2 1032 5484 113 17 7 chr4 58649174 58650000 -96980120 + Lx4A LINE L1 5643 6476 -582 2 1032 3368 35 0 0 chr4 58650000 58650395 -96979725 - L1Md_T LINE L1 0 6582 6188 2 1032 3625 114 69 19 chr4 58650396 58650961 -96979159 + Lx4A LINE L1 6465 7057 -1 2 1032 468 316 42 16 chr4 58651010 58651203 -96978917 + Lx8 LINE L1 6969 7166 -307 2 1032 2518 47 5 171 chr4 58651762 58652200 -96977920 + RLTR10B2 LTR ERVK 1 365 0 2 1032 375 41 0 0 chr4 58652223 58652272 -96977848 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1032 611 37 25 0 chr4 58652415 58652496 -96977624 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2 1032 1074 292 17 24 chr4 58652857 58653145 -96976975 + B4A SINE B4 1 286 -6 2 1032 252 371 30 20 chr4 58653900 58654098 -96976022 - MIRb SINE MIR -4 264 65 2 1032 608 220 138 37 chr4 58654150 58654339 -96975781 - ORR1D1 LTR MaLR 0 374 167 2 1032 292 190 0 25 chr4 58654344 58654425 -96975695 + GA-rich Low_complexity Low_complexity 3 81 0 2 1032 906 297 137 7 chr4 58655213 58655623 -96974497 + RCHARR1 DNA MER1_type 4 466 -508 2 1032 915 186 28 14 chr4 58655629 58655847 -96974273 + RCHARR1 DNA MER1_type 753 973 -1 2 1032 808 134 0 0 chr4 58655870 58655997 -96974123 + B1_Mur4 SINE Alu 24 150 0 2 1032 249 108 0 0 chr4 58655997 58656034 -96974086 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 2 1032 484 178 69 0 chr4 58656967 58657068 -96973052 + Lx9 LINE L1 7245 7352 -292 2 1032 525 247 115 64 chr4 58657146 58657302 -96972818 + RSINE1 SINE B4 2 165 0 2 1032 23 54 0 0 chr4 58657302 58657339 -96972781 + AT_rich Low_complexity Low_complexity 1 37 0 2 1032 2179 105 15 24 chr4 58657352 58657684 -96972436 + ORR1A4 LTR MaLR 1 329 0 2 1032 2193 93 45 60 chr4 58657980 58658312 -96971808 + ORR1A2 LTR MaLR 1 327 0 2 1032 367 256 0 0 chr4 58659050 58659140 -96970980 - PB1D10 SINE Alu -5 112 23 2 1032 241 218 0 68 chr4 58659488 58659547 -96970573 + MTE2b LTR MaLR 16 70 -309 2 1032 369 0 0 0 chr4 58659558 58659599 -96970521 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 1032 849 50 25 0 chr4 58659599 58659718 -96970402 - B2_Mm2 SINE B2 -15 180 59 2 1032 853 194 113 109 chr4 58659751 58660035 -96970085 + MTE2b LTR MaLR 77 361 -18 2 1032 433 296 15 29 chr4 58660425 58660561 -96969559 + B4A SINE B4 15 148 -144 2 1032 471 273 48 48 chr4 58661131 58661277 -96968843 + RSINE1 SINE B4 16 161 -4 2 1032 746 215 0 22 chr4 58661342 58661480 -96968640 - B1_Mus1 SINE Alu -11 137 3 2 1032 980 125 6 0 chr4 58662384 58662544 -96967576 + (TTG)n Simple_repeat Simple_repeat 1 161 0 2 1032 295 215 34 38 chr4 58662544 58662633 -96967487 - B1F SINE Alu -13 104 19 2 1032 304 266 104 17 chr4 58662662 58662777 -96967343 - PB1 SINE Alu -2 125 1 3 1032 703 256 132 12 chr4 58663538 58663787 -96966333 + B4A SINE B4 1 279 -13 3 1032 801 49 0 0 chr4 58664726 58664828 -96965292 + (GA)n Simple_repeat Simple_repeat 1 102 0 3 1032 484 312 92 27 chr4 58664856 58665116 -96965004 - B4A SINE B4 -14 278 2 3 1032 23 68 0 0 chr4 58666591 58666635 -96963485 + AT_rich Low_complexity Low_complexity 1 44 0 3 1032 372 261 0 0 chr4 58666635 58666704 -96963416 + ID4 SINE ID 3 71 -12 3 1032 1596 63 11 0 chr4 58667089 58667280 -96962840 + B2_Mm1t SINE B2 1 193 0 3 1032 428 174 68 23 chr4 58667540 58667628 -96962492 - ID_B1 SINE B4 -14 210 119 3 1032 278 260 133 20 chr4 58667614 58667712 -96962408 - ORR1E LTR MaLR -250 109 1 3 1032 5738 188 69 20 chr4 58668532 58668570 -96961550 + Lx5 LINE L1 5759 5787 -1263 3 1032 1202 72 0 0 chr4 58668570 58668709 -96961411 + B1_Mus1 SINE Alu 2 140 -8 3 1032 225 24 71 0 chr4 58668709 58668751 -96961369 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 1032 5738 188 69 20 chr4 58668751 58669943 -96960177 + Lx5 LINE L1 5788 7049 -1 3 1032 24 0 0 0 chr4 58670017 58670041 -96960079 + AT_rich Low_complexity Low_complexity 1 24 0 3 1032 600 216 16 120 chr4 58670457 58670641 -96959479 + RSINE1 SINE B4 1 165 0 3 1032 547 285 12 19 chr4 58671374 58671535 -96958585 + RSINE1 SINE B4 3 162 -3 3 1032 432 0 0 0 chr4 58671556 58671604 -96958516 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1032 1231 55 14 0 chr4 58671645 58671791 -96958329 + B1_Mus1 SINE Alu 1 148 0 3 1032 215 236 0 0 chr4 58671792 58671847 -96958273 + A-rich Low_complexity Low_complexity 1 55 0 3 1032 486 310 103 0 chr4 58671985 58672130 -96957990 + RSINE1 SINE B4 4 163 -2 3 1032 26 0 0 0 chr4 58672271 58672297 -96957823 + AT_rich Low_complexity Low_complexity 1 26 0 3 1032 553 266 28 7 chr4 58672312 58672456 -96957664 + B1F SINE Alu 1 147 -2 3 1032 573 208 0 33 chr4 58672582 58672766 -96957354 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1032 390 21 0 0 chr4 58672790 58672837 -96957283 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1032 180 77 0 0 chr4 58673263 58673289 -96956831 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 3 1032 203 313 131 12 chr4 58673500 58673584 -96956536 - L3 LINE CR1 -1461 3028 2935 3 1032 296 300 140 52 chr4 58673707 58674108 -96956012 + L1M5 LINE L1 3727 4162 -1984 3 1032 204 215 65 0 chr4 58674392 58674485 -96955635 + (TTAA)n Simple_repeat Simple_repeat 4 102 0 3 1032 187 147 0 29 chr4 58674954 58674989 -96955131 - L3 LINE CR1 -3530 959 926 3 1032 628 355 55 53 chr4 58675140 58675315 -96954805 - MER47B DNA MER2_type 0 418 247 3 1032 1007 268 14 48 chr4 58675315 58675605 -96954515 + B4A SINE B4 1 280 -12 3 1032 628 355 55 53 chr4 58675605 58675623 -96954497 - MER47B DNA MER2_type -172 246 222 3 1032 242 29 29 0 chr4 58675623 58675658 -96954462 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1032 628 355 55 53 chr4 58675658 58675879 -96954241 - MER47B DNA MER2_type -197 221 3 3 1032 333 253 45 22 chr4 58676021 58676110 -96954010 + B1F SINE Alu 54 144 -5 3 1032 231 258 31 82 chr4 58677243 58677340 -96952780 - B1_Mm SINE Alu -51 96 5 3 1032 350 242 204 36 chr4 58677257 58677394 -96952726 - ID_B1 SINE B4 -63 161 2 3 1032 244 333 167 9 chr4 58677406 58677754 -96952366 + L2b LINE L2 1341 1743 -1676 3 1032 221 319 0 0 chr4 58677988 58678060 -96952060 + L2b LINE L2 3301 3372 -3 3 1032 3910 84 3 0 chr4 58678325 58678956 -96951164 - Lx LINE L1 -568 6086 5454 3 1032 2932 153 71 40 chr4 58678944 58679495 -96950625 + Lx LINE L1 6079 6646 -8 3 1032 441 0 0 0 chr4 58679690 58679739 -96950381 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1032 243 0 0 0 chr4 58679739 58679765 -96950355 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1032 22 0 0 0 chr4 58679994 58680016 -96950104 + AT_rich Low_complexity Low_complexity 1 22 0 3 1032 225 180 0 0 chr4 58680294 58680344 -96949776 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 3 1032 751 291 15 20 chr4 58680362 58680565 -96949555 + B4A SINE B4 42 243 -49 3 1032 406 213 11 44 chr4 58680698 58680880 -96949240 + (CATA)n Simple_repeat Simple_repeat 4 179 0 3 1032 523 194 0 37 chr4 58680918 58681105 -96949015 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1032 1613 64 64 0 chr4 58681989 58682207 -96947913 + L1_Mm LINE L1 5465 5696 -187 3 1032 532 194 11 21 chr4 58682294 58682389 -96947731 + B1_Mur1 SINE Alu 43 136 -13 3 1032 347 235 3 13 chr4 58682800 58682921 -96947199 + ID4 SINE ID 1 118 -34 3 1032 300 53 0 0 chr4 58682947 58682985 -96947135 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1032 195 129 0 0 chr4 58683393 58683424 -96946696 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1032 432 0 0 0 chr4 58683981 58684029 -96946091 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1032 300 70 0 0 chr4 58684163 58684206 -96945914 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1032 207 0 0 0 chr4 58685319 58685342 -96944778 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1032 318 279 101 39 chr4 58685342 58685591 -96944529 + L1M2 LINE L1 2224 2456 -4393 3 1032 26 0 0 0 chr4 58686122 58686148 -96943972 + AT_rich Low_complexity Low_complexity 1 26 0 3 1032 252 0 0 0 chr4 58686201 58686229 -96943891 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 3 1032 256 217 52 42 chr4 58687236 58687288 -96942832 + L1MA8 LINE L1 6166 6221 -70 3 1032 366 61 0 0 chr4 58687288 58687337 -96942783 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1032 256 217 52 42 chr4 58687337 58687380 -96942740 + L1MA8 LINE L1 6222 6261 -30 3 1032 1302 181 24 14 chr4 58687414 58687627 -96942493 - B3 SINE B2 -1 215 1 3 1032 283 337 30 30 chr4 58687847 58687948 -96942172 + B1F SINE Alu 1 101 -48 3 1032 210 154 0 0 chr4 58688362 58688401 -96941719 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1032 884 276 100 48 chr4 58688604 58688730 -96941390 + B4A SINE B4 1 149 -143 3 1032 2082 138 58 0 chr4 58688730 58689041 -96941079 - ORR1A4 LTR MaLR 0 329 1 3 1032 884 276 100 48 chr4 58689041 58689184 -96940936 + B4A SINE B4 150 284 -8 3 1032 342 316 100 16 chr4 58689274 58689657 -96940463 + L1M4 LINE L1 4449 4882 -1264 3 1032 23 54 0 0 chr4 58689657 58689694 -96940426 + AT_rich Low_complexity Low_complexity 1 37 0 3 1032 240 297 16 0 chr4 58689881 58689945 -96940175 - MTEb LTR MaLR 0 379 315 3 1032 333 290 129 8 chr4 58690033 58690165 -96939955 - B4 SINE B4 -85 207 60 3 1032 1232 61 0 0 chr4 58690323 58690470 -96939650 + B1_Mus1 SINE Alu 2 148 0 3 1032 464 136 11 0 chr4 58690470 58690558 -96939562 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 3 1032 279 0 0 0 chr4 58690951 58690982 -96939138 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1032 328 346 17 100 chr4 58691970 58692201 -96937919 + MamGypLTR3 LTR Gypsy 475 686 -153 3 1032 306 0 0 0 chr4 58693209 58693243 -96936877 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 1032 4484 127 82 22 chr4 58693805 58694499 -96935621 + RMER19A LTR ERVK 1 736 -1 3 1032 1127 96 0 6 chr4 58694499 58694667 -96935453 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 3 1032 621 159 0 40 chr4 58694680 58694831 -96935289 + GA-rich Low_complexity Low_complexity 3 147 0 3 1032 2089 53 0 50 chr4 58695378 58695677 -96934443 - RLTR10B LTR ERVK 0 292 9 3 1032 262 56 0 0 chr4 58695677 58695713 -96934407 - RLTR10B LTR ERVK -256 36 1 3 1032 7530 57 7 28 chr4 58695713 58696669 -96933451 - MMERVK10C-int LTR ERVK 0 7581 6646 3 1032 28336 45 1 0 chr4 58696655 58699965 -96930155 - MMERVK10C-int LTR ERVK -1771 5810 2498 3 1032 6302 48 0 4 chr4 58699955 58700706 -96929414 - MMERVK10C-int LTR ERVK -5964 1617 870 3 1032 2831 100 23 10 chr4 58700704 58701098 -96929022 - MMERVK10C-int LTR ERVK -7182 399 1 3 1032 1843 52 60 53 chr4 58701098 58701380 -96928740 - RLTR10B LTR ERVK 0 292 9 3 1032 337 24 0 0 chr4 58701388 58701430 -96928690 - RLTR10B LTR ERVK -250 42 1 3 1032 242 281 38 94 chr4 58701483 58701589 -96928531 + LTR33B LTR ERVL 381 480 -23 3 1032 261 0 0 0 chr4 58702101 58702130 -96927990 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1032 215 61 30 0 chr4 58702173 58702206 -96927914 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1032 636 50 0 0 chr4 58702627 58702707 -96927413 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 3 1032 505 346 119 4 chr4 58703039 58703101 -96927019 + B4A SINE B4 1 70 -222 3 1032 423 0 0 0 chr4 58703101 58703148 -96926972 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1032 505 346 119 4 chr4 58703148 58703346 -96926774 + B4A SINE B4 71 290 -2 3 1032 467 221 9 19 chr4 58703371 58703477 -96926643 + B1F SINE Alu 1 105 -44 3 1032 843 272 160 38 chr4 58704285 58704735 -96925385 - MLT1D LTR MaLR 0 505 1 3 1032 220 301 24 0 chr4 58705055 58705138 -96924982 + GA-rich Low_complexity Low_complexity 3 87 0 3 1032 703 32 21 0 chr4 58705139 58705233 -96924887 + (GGGA)n Simple_repeat Simple_repeat 1 96 0 3 1032 319 270 127 15 chr4 58705966 58706127 -96923993 - MLT1F1 LTR MaLR 0 555 395 3 1032 567 210 153 0 chr4 58707015 58707139 -96922981 + B1F2 SINE Alu 2 144 -5 3 1032 1476 78 5 20 chr4 58707220 58707417 -96922703 + B2_Mm2 SINE B2 2 195 0 3 1032 510 103 0 0 chr4 58707493 58707571 -96922549 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1032 211 329 111 56 chr4 58708453 58708669 -96921451 - MIRb SINE MIR -18 250 23 3 1032 528 226 0 0 chr4 58708908 58709032 -96921088 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1032 251 317 75 34 chr4 58709623 58709770 -96920350 + MamGypLTR1c LTR Gypsy 126 278 -525 3 1032 524 225 36 0 chr4 58710322 58710433 -96919687 - B1_Mur1 SINE Alu -1 148 34 3 1032 659 239 7 15 chr4 58710672 58710808 -96919312 + ID_B1 SINE B4 88 222 -2 3 1032 201 39 0 0 chr4 58710810 58710836 -96919284 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1032 361 344 112 33 chr4 58711135 58711466 -96918654 + ORR1E LTR MaLR 1 357 -2 3 1032 413 328 0 8 chr4 58711510 58711627 -96918493 + PB1D10 SINE Alu 1 116 -1 3 1032 686 208 158 23 chr4 58712455 58712467 -96917653 - B3 SINE B2 -15 201 190 3 1032 207 100 0 0 chr4 58712467 58712497 -96917623 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 3 1032 686 208 158 23 chr4 58712497 58712661 -96917459 - B3 SINE B2 -27 189 1 3 1032 322 223 92 55 chr4 58712792 58712901 -96917219 - PB1D10 SINE Alu 0 117 5 3 1032 1230 75 0 0 chr4 58713563 58713710 -96916410 + B1_Mus2 SINE Alu 1 147 0 4 1032 24 0 0 0 chr4 58713719 58713743 -96916377 + AT_rich Low_complexity Low_complexity 1 24 0 4 1032 499 333 50 20 chr4 58714065 58714264 -96915856 + B4A SINE B4 4 208 -84 4 1032 221 0 35 0 chr4 58714267 58714296 -96915824 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1032 192 77 0 0 chr4 58714333 58714359 -96915761 + (CG)n Simple_repeat Simple_repeat 2 27 0 4 1032 288 0 0 0 chr4 58714359 58714390 -96915730 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1032 476 269 20 66 chr4 58714444 58714595 -96915525 - RLTR25B LTR ERVK -4 1024 881 4 1032 471 110 14 248 chr4 58714563 58714708 -96915412 - RLTR25B LTR ERVK -250 778 668 4 1032 33599 85 4 7 chr4 58714773 58720001 -96910119 + L1Md_F2 LINE L1 416 5585 -298 4 1 8446 50 7 1 chr4 58720002 58720980 -96909140 + L1Md_F2 LINE L1 5587 6570 -12 4 1033 25 0 0 0 chr4 58721175 58721200 -96908920 + AT_rich Low_complexity Low_complexity 1 25 0 4 1033 262 61 20 20 chr4 58721238 58721288 -96908832 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 4 1033 1206 68 7 0 chr4 58721290 58721436 -96908684 - B1_Mm SINE Alu 0 147 1 4 1033 2054 188 42 101 chr4 58721762 58722236 -96907884 - RLTR25B LTR ERVK -582 446 1 4 1033 625 60 210 0 chr4 58722580 58722680 -96907440 - B2_Mm2 SINE B2 -73 122 2 4 1033 2010 153 133 56 chr4 58722862 58723276 -96906844 - RLTR41 LTR ERV1 0 446 1 4 1033 261 262 24 36 chr4 58723549 58723632 -96906488 + MLT1H LTR MaLR 80 161 -388 4 1033 396 0 0 0 chr4 58724072 58724116 -96906004 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1033 672 192 8 16 chr4 58724125 58724252 -96905868 - B1F SINE Alu -9 140 15 4 1033 495 272 0 0 chr4 58724266 58724380 -96905740 - ID_B1 SINE B4 -1 223 110 4 1033 604 248 8 0 chr4 58724548 58724669 -96905451 + ID_B1 SINE B4 95 216 -8 4 1033 557 266 23 29 chr4 58725087 58725261 -96904859 - MER5B DNA MER1_type -5 173 1 4 1033 1159 193 208 7 chr4 58725786 58726094 -96904026 - ORR1D2 LTR MaLR 0 370 1 4 1033 465 289 101 62 chr4 58726521 58726797 -96903323 - B4A SINE B4 -3 289 3 4 1033 1199 48 0 14 chr4 58728085 58728233 -96901887 + B1_Mm SINE Alu 1 146 -1 4 1033 321 290 65 0 chr4 58728384 58728491 -96901629 - PB1D10 SINE Alu -1 116 3 4 1033 495 102 0 0 chr4 58729205 58729293 -96900827 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1033 234 189 0 36 chr4 58730111 58730149 -96899971 + polypurine Low_complexity Low_complexity 4 40 0 4 1033 1392 56 0 0 chr4 58730149 58730327 -96899793 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 4 1033 360 0 0 0 chr4 58730330 58730370 -96899750 + (GAGAA)n Simple_repeat Simple_repeat 1 40 0 4 1033 234 189 0 36 chr4 58730370 58730382 -96899738 + polypurine Low_complexity Low_complexity 41 52 0 4 1033 317 237 62 147 chr4 58730861 58731057 -96899063 + L1MA4 LINE L1 5678 5925 -375 4 1033 859 116 61 7 chr4 58731324 58731471 -96898649 - RLTR17 LTR ERVK -537 155 1 4 1033 6825 163 49 55 chr4 58731471 58732255 -96897865 - RMER3D-int LTR ERVK 0 2842 2077 4 1033 3252 60 10 5 chr4 58732255 58732673 -96897447 - BGLII LTR ERVK 0 421 2 4 1033 6825 163 49 55 chr4 58732673 58733384 -96896736 - RMER3D-int LTR ERVK -766 2076 1356 4 1033 295 174 54 13 chr4 58734239 58734326 -96895794 + L1M2 LINE L1 5251 5335 -808 4 1033 3309 174 13 97 chr4 58734473 58735042 -96895078 + Lx7 LINE L1 6964 7492 -204 4 1033 1258 20 0 20 chr4 58735042 58735192 -96894928 - B1_Mus2 SINE Alu 0 147 1 4 1033 3309 174 13 97 chr4 58735192 58735276 -96894844 + Lx7 LINE L1 7493 7555 -141 4 1033 240 35 0 0 chr4 58735276 58735305 -96894815 + (CAT)n Simple_repeat Simple_repeat 2 30 0 4 1033 3309 174 13 97 chr4 58735305 58735446 -96894674 + Lx7 LINE L1 7556 7692 -4 4 1033 342 309 139 27 chr4 58736320 58736543 -96893577 + L1M2 LINE L1 5500 5747 -433 4 1033 602 140 0 0 chr4 58736819 58736912 -96893208 - BGLII_A LTR ERVK -352 93 1 4 1033 1719 26 0 0 chr4 58737272 58737465 -96892655 + B2_Mm1a SINE B2 1 193 0 4 1033 225 286 16 0 chr4 58737685 58737748 -96892372 + ID4 SINE ID 1 64 -19 4 1033 423 285 193 9 chr4 58738123 58738346 -96891774 + L1MD3 LINE L1 7724 7987 -8 4 1033 686 118 50 0 chr4 58740838 58740957 -96889163 + B2_Mm2 SINE B2 70 194 -1 4 1033 685 266 38 84 chr4 58741222 58741460 -96888660 + B4A SINE B4 5 231 -61 4 1033 236 30 30 0 chr4 58741545 58741578 -96888542 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 4 1033 1546 182 41 108 chr4 58741795 58742150 -96887970 + Lx5 LINE L1 885 1240 -6488 4 1033 2974 119 0 7 chr4 58742150 58742589 -96887531 + Lx2A1 LINE L1 6569 7004 -4 4 1033 23334 167 43 23 chr4 58742589 58747751 -96882369 + Lx5 LINE L1 1237 6733 -727 4 1033 294 325 73 0 chr4 58748067 58748190 -96881930 - B1F SINE Alu -12 137 6 4 1033 901 106 33 2 chr4 58748683 58748843 -96881277 - B2_Mm2 SINE B2 -31 162 3 4 1033 422 288 9 0 chr4 58749157 58749268 -96880852 + PB1D10 SINE Alu 1 112 -5 4 1033 237 280 0 0 chr4 58749270 58749320 -96880800 + polypurine Low_complexity Low_complexity 2 51 0 4 1033 271 227 45 0 chr4 58749360 58749426 -96880694 + PB1D10 SINE Alu 49 117 0 4 1033 3212 51 5 8 chr4 58750645 58751040 -96879080 - MTA_Mm LTR MaLR 0 396 3 4 1033 207 0 0 0 chr4 58751760 58751783 -96878337 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1033 15129 67 25 1 chr4 58752761 58755450 -96874670 + L1VL4 LINE L1 199 2944 -615 4 1033 324 158 0 0 chr4 58755484 58755541 -96874579 - RMER6B LTR ERVK -402 59 3 4 1033 319 190 0 0 chr4 58755541 58755615 -96874505 + RMER1B Other Other 917 1027 -39 4 1033 367 250 38 68 chr4 58755842 58755963 -96874157 + B1F1 SINE Alu 21 141 -8 4 1033 531 0 0 0 chr4 58755963 58756022 -96874098 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1033 367 250 38 68 chr4 58756022 58756033 -96874087 + B1F1 SINE Alu 142 149 0 4 1033 375 204 10 51 chr4 58756103 58756201 -96873919 - B3 SINE B2 0 216 123 4 1033 326 294 73 0 chr4 58756373 58756482 -96873638 + RSINE1 SINE B4 11 127 -38 4 1033 378 61 0 0 chr4 58756695 58756744 -96873376 + (TTG)n Simple_repeat Simple_repeat 2 50 0 4 1033 1679 162 193 20 chr4 58756744 58757091 -96873029 + MTC LTR MaLR 12 420 -1 4 1033 343 281 11 0 chr4 58757106 58757195 -96872925 + B4A SINE B4 82 171 -121 4 1033 1668 124 77 91 chr4 58757196 58757560 -96872560 - ORR1B1 LTR MaLR -2 392 34 4 1033 390 287 19 0 chr4 58757561 58757669 -96872451 + B4A SINE B4 166 275 -17 4 1033 297 0 0 0 chr4 58757684 58757717 -96872403 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1033 945 174 33 37 chr4 58757734 58757949 -96872171 + URR1A DNA MER1_type 13 226 0 4 1033 844 234 62 10 chr4 58758029 58758295 -96871825 - MTD LTR MaLR 0 419 113 4 1033 438 251 142 32 chr4 58758332 58758550 -96871570 - MER33 DNA MER1_type -69 255 14 4 1033 792 32 0 0 chr4 58759067 58759162 -96870958 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 4 1033 236 262 18 55 chr4 58760286 58760395 -96869725 - ORR1E LTR MaLR -104 255 151 4 1033 645 278 6 12 chr4 58760416 58760580 -96869540 + RSINE1 SINE B4 1 163 -2 4 1033 474 18 0 0 chr4 58760595 58760650 -96869470 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1033 987 276 35 30 chr4 58760660 58761026 -96869094 - L1MA7 LINE L1 -368 5923 5556 4 1033 299 316 0 0 chr4 58761149 58761225 -96868895 + ID4_ SINE ID 1 76 -7 4 1033 333 123 0 0 chr4 58762633 58762698 -96867422 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1033 244 204 18 18 chr4 58762796 58762851 -96867269 - B3A SINE B2 -143 55 1 4 1033 26 30 0 0 chr4 58762899 58762932 -96867188 + AT_rich Low_complexity Low_complexity 1 33 0 4 1033 518 284 160 0 chr4 58763090 58763259 -96866861 - ID_B1 SINE B4 -26 198 3 4 1033 3214 41 26 5 chr4 58763719 58764107 -96866013 + MTA_Mm LTR MaLR 1 396 0 4 1033 384 243 43 86 chr4 58764419 58764536 -96865584 + PB1D10 SINE Alu 1 112 -5 4 1033 443 187 10 62 chr4 58764774 58764871 -96865249 + PB1D7 SINE Alu 27 118 -2 4 1033 504 261 9 9 chr4 58765204 58765320 -96864800 + PB1D10 SINE Alu 2 117 0 4 1033 1926 162 35 25 chr4 58765868 58766274 -96863846 - RMER17C LTR ERVK 0 410 1 4 1033 207 0 0 0 chr4 58766642 58766665 -96863455 + (GTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1033 1704 158 17 0 chr4 58767102 58767393 -96862727 + RLTR20D LTR ERVK 2 297 -271 4 1033 1454 143 16 8 chr4 58767393 58767646 -96862474 + L1VL2 LINE L1 416 670 -5665 4 1033 21726 99 8 48 chr4 58767704 58769707 -96860413 + L1_Mus2 LINE L1 2631 4601 -1282 4 1033 845 53 0 0 chr4 58769707 58769821 -96860299 + B1_Mm SINE Alu 34 147 0 4 1033 21726 99 8 48 chr4 58769821 58770462 -96859658 + L1_Mus2 LINE L1 4602 5234 -649 4 1033 378 57 0 0 chr4 58770462 58770515 -96859605 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1033 21726 71 35 21 chr4 58770515 58771798 -96858322 + L1_Mus2 LINE L1 5235 6562 -4 4 1033 681 13 0 0 chr4 58771798 58771876 -96858244 + (GAA)n Simple_repeat Simple_repeat 2 79 0 4 1033 17099 145 10 12 chr4 58771876 58773088 -96857032 + L1Md_F2 LINE L1 3066 4282 -1601 4 1033 1145 50 7 7 chr4 58773088 58773230 -96856890 + B1_Mus2 SINE Alu 1 142 -5 4 1033 17099 124 11 9 chr4 58773230 58774982 -96855138 + L1Md_F2 LINE L1 4283 6031 -551 4 1033 1040 124 101 29 chr4 58774982 58775189 -96854931 - RMER19B LTR ERVK -680 222 1 4 1033 2655 148 63 75 chr4 58775189 58775671 -96854449 - MurERV4_19-int LTR ERVK 0 5780 5319 4 1033 284 0 28 0 chr4 58775671 58775707 -96854413 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1033 2655 148 63 75 chr4 58775707 58775839 -96854281 - MurERV4_19-int LTR ERVK -462 5318 5173 4 1033 285 167 37 0 chr4 58775832 58775886 -96854234 - MurERV4_19-int LTR ERVK -502 5278 5223 4 1033 1099 180 9 47 chr4 58775889 58776176 -96853944 - RMER19B LTR ERVK -665 237 1 4 1033 190 413 24 12 chr4 58777355 58777524 -96852596 + MER5A DNA MER1_type 5 175 -14 4 1033 1219 284 177 13 chr4 58778799 58779940 -96850180 - L1MB7 LINE L1 -197 5987 4663 4 1033 766 307 11 5 chr4 58780035 58780225 -96849895 + B4A SINE B4 1 191 -101 4 1033 1047 16 0 0 chr4 58780229 58780350 -96849770 + (GAA)n Simple_repeat Simple_repeat 1 121 0 4 1033 1573 204 17 91 chr4 58780596 58781001 -96849119 + Lx6 LINE L1 7062 7436 -24 4 1033 3113 99 36 13 chr4 58781007 58781479 -96848641 - Lx LINE L1 -6 6648 6166 4 1033 4860 142 1 0 chr4 58781493 58782260 -96847860 - L1_Mm LINE L1 0 5883 5116 5 1033 2774 6 0 63 chr4 58782260 58782609 -96847511 - IAPLTR2a LTR ERVK 0 327 1 5 1033 13661 69 20 7 chr4 58782609 58784410 -96845710 - IAPEz-int LTR ERVK 0 6481 4656 5 1033 1921 63 4 0 chr4 58784409 58784648 -96845472 - IAPEY3-int LTR ERVK -5183 2497 2258 5 1033 380 105 0 0 chr4 58784653 58784710 -96845410 - B1_Mur4 SINE Alu -93 57 1 5 1033 4747 92 73 53 chr4 58784710 58785818 -96844302 - IAPEz-int LTR ERVK -5486 995 9 5 1033 2847 59 51 10 chr4 58785819 58786214 -96843906 - IAPLTR2a LTR ERVK 0 411 1 5 1033 20861 142 20 33 chr4 58786214 58790873 -96839247 - L1VL2 LINE L1 -762 5124 530 5 1033 569 299 15 0 chr4 58790891 58791025 -96839095 + B3A SINE B2 27 162 -36 5 1033 368 257 119 0 chr4 58791043 58791144 -96838976 + PB1D9 SINE Alu 1 113 -7 5 1033 474 18 0 0 chr4 58791353 58791408 -96838712 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1033 261 250 56 111 chr4 58791527 58791617 -96838503 + MLT1E2 LTR MaLR 1 85 -542 5 1033 554 268 159 23 chr4 58791595 58791771 -96838349 + B4A SINE B4 6 205 -87 5 1033 671 21 41 0 chr4 58791771 58791868 -96838252 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 1033 3173 64 2 2 chr4 58791948 58792354 -96837766 - MTB_Mm LTR MaLR 0 407 2 5 1033 837 0 0 0 chr4 58793156 58793249 -96836871 + (GGAGA)n Simple_repeat Simple_repeat 3 95 0 5 1033 1343 271 119 14 chr4 58793700 58793981 -96836139 + Lx8 LINE L1 6934 7231 -242 5 1033 387 0 0 0 chr4 58793981 58794024 -96836096 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5 1033 1343 271 119 14 chr4 58794024 58794097 -96836023 + Lx8 LINE L1 7232 7317 -156 5 1033 3188 48 8 0 chr4 58794097 58794490 -96835630 + MTA_Mm LTR MaLR 1 396 0 5 1033 1343 271 119 14 chr4 58794490 58794621 -96835499 + Lx8 LINE L1 7318 7470 -3 5 1033 845 250 7 0 chr4 58794646 58794798 -96835322 + B3A SINE B2 2 154 -44 5 1033 333 68 0 0 chr4 58794798 58794842 -96835278 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1033 697 290 59 49 chr4 58795256 58795459 -96834661 - B4 SINE B4 0 292 88 5 1033 1400 73 10 5 chr4 58795517 58795709 -96834411 + B2_Mm1t SINE B2 1 193 0 5 1033 22 56 0 0 chr4 58795889 58795925 -96834195 + AT_rich Low_complexity Low_complexity 1 36 0 5 1033 2793 162 22 39 chr4 58795936 58796469 -96833651 + RLTR11A2 LTR ERVK 3 526 -1 5 1033 205 89 44 0 chr4 58799537 58799582 -96830538 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1033 4254 167 66 44 chr4 58800892 58802082 -96828038 - L1_Mur2 LINE L1 -1656 4224 2914 5 1033 522 0 0 0 chr4 58802092 58802150 -96827970 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 5 1033 849 98 0 0 chr4 58802150 58802261 -96827859 - B1_Mus1 SINE Alu -10 138 28 5 1033 3985 231 99 97 chr4 58802261 58802782 -96827338 - L1_Mur2 LINE L1 -2967 2913 2384 5 1033 1100 53 0 0 chr4 58802782 58802915 -96827205 + B1_Mus2 SINE Alu 2 134 -13 5 1033 216 0 0 0 chr4 58802915 58802939 -96827181 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1033 3985 231 99 97 chr4 58802939 58803045 -96827075 - L1_Mur2 LINE L1 -3497 2383 2281 5 1033 397 293 17 33 chr4 58803045 58803165 -96826955 - B4A SINE B4 -171 121 4 5 1033 494 264 99 96 chr4 58803169 58803409 -96826711 - L1M4 LINE L1 -876 5270 5031 5 1033 788 136 133 23 chr4 58803409 58803582 -96826538 - B2_Mm2 SINE B2 0 195 4 5 1033 494 264 99 96 chr4 58803582 58803705 -96826415 - L1M4 LINE L1 -1116 5030 4906 5 1033 1387 259 111 24 chr4 58803751 58804428 -96825692 - L1M4 LINE L1 -1322 4824 4089 5 1033 1079 91 52 0 chr4 58804428 58804582 -96825538 + B2_Mm2 SINE B2 2 163 -32 5 1033 806 259 169 18 chr4 58804724 58805180 -96824940 - L1M4 LINE L1 -2147 3999 3475 5 1033 1122 71 0 0 chr4 58805443 58805584 -96824536 + B1_Mus1 SINE Alu 2 142 -6 5 1033 7556 67 43 0 chr4 58805684 58806736 -96823384 - L1_Mus3 LINE L1 -3 6635 5539 5 1033 624 266 77 13 chr4 58806867 58807023 -96823097 - MER58A DNA MER1_type -46 178 13 5 1033 22 0 0 0 chr4 58807222 58807244 -96822876 + AT_rich Low_complexity Low_complexity 1 22 0 5 1033 378 237 248 30 chr4 58807662 58808092 -96822028 - L1M2 LINE L1 -1342 4801 4229 5 1033 269 175 157 36 chr4 58808769 58808852 -96821268 - L1_Rod LINE L1 -2432 3415 3323 5 1033 294 29 0 0 chr4 58810472 58810507 -96819613 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1033 290 274 177 7 chr4 58811571 58811718 -96818402 + MER112 DNA MER1_type 1 172 -89 5 1033 222 136 0 0 chr4 58811731 58811775 -96818345 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1033 386 232 63 0 chr4 58813701 58813796 -96816324 - PB1D10 SINE Alu -16 101 1 5 1033 399 352 73 40 chr4 58815070 58815181 -96814939 + L1MC4 LINE L1 6903 7021 -1021 5 1033 516 260 172 0 chr4 58815181 58815350 -96814770 + B3A SINE B2 1 198 0 5 1033 399 352 73 40 chr4 58815350 58815608 -96814512 + L1MC4 LINE L1 7022 7283 -759 5 1033 769 238 27 38 chr4 58815668 58816019 -96814101 + RLTR16 LTR ERVK 1 317 -188 5 1033 258 230 108 0 chr4 58816398 58816472 -96813648 + ID4 SINE ID 2 83 0 5 1033 198 103 0 0 chr4 58816477 58816506 -96813614 + (CAG)n Simple_repeat Simple_repeat 1 29 0 5 1033 8053 199 52 10 chr4 58816725 58818363 -96811757 + Lx6 LINE L1 5692 7430 -30 5 1033 378 0 0 0 chr4 58818689 58818731 -96811389 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1033 272 218 18 0 chr4 58819052 58819107 -96811013 + RMER30 DNA MER1_type 140 195 -7 5 1033 294 332 140 11 chr4 58819159 58819345 -96810775 + Tigger13a DNA MER2_type 439 648 -123 5 1033 805 232 101 38 chr4 58819953 58820190 -96809930 + MLT1B LTR MaLR 111 362 -28 5 1033 636 239 112 41 chr4 58820217 58820413 -96809707 - B3 SINE B2 -6 210 1 5 1033 279 135 13 63 chr4 58820774 58820853 -96809267 + G-rich Low_complexity Low_complexity 4 78 0 5 1033 1225 27 0 20 chr4 58821001 58821152 -96808968 - B1_Mus1 SINE Alu 0 148 1 5 1033 712 203 7 40 chr4 58821489 58821638 -96808482 + B1_Mur2 SINE Alu 6 149 0 5 1033 281 380 10 0 chr4 58821885 58821985 -96808135 + MLT1J2 LTR MaLR 64 164 -284 5 1033 1756 50 0 0 chr4 58823099 58823318 -96806802 + L1Md_T LINE L1 6364 6582 0 5 1033 868 131 35 0 chr4 58825282 58825427 -96804693 + B1_Mur4 SINE Alu 1 150 0 5 1033 300 321 64 64 chr4 58826040 58826060 -96804060 + B1F2 SINE Alu 7 144 -3 5 1033 493 265 25 8 chr4 58826060 58826178 -96803942 + ID_B1 SINE B4 100 219 -5 5 1033 1186 41 14 0 chr4 58826290 58826435 -96803685 - B1_Mus1 SINE Alu 0 148 2 5 1033 895 298 45 16 chr4 58826529 58826826 -96803294 + B4A SINE B4 2 291 -1 5 1033 182 91 30 0 chr4 58827765 58827798 -96802322 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 1033 239 207 138 0 chr4 58828434 58828492 -96801628 + ID4_ SINE ID 2 67 -16 5 1033 244 267 135 135 chr4 58829173 58829218 -96800902 - B3 SINE B2 -112 104 63 5 1033 1466 68 5 0 chr4 58829218 58829409 -96800711 + B2_Mm1t SINE B2 1 192 -1 5 1033 244 267 135 135 chr4 58829409 58829467 -96800653 - B3 SINE B2 -154 62 1 5 1033 2317 140 31 0 chr4 58829624 58830010 -96800110 + L1_Mur2 LINE L1 4798 5195 -682 5 1033 710 216 50 7 chr4 58830605 58830745 -96799375 - B1_Mur4 SINE Alu -3 147 2 5 1033 607 143 25 0 chr4 58830869 58830988 -96799132 + CT-rich Low_complexity Low_complexity 3 124 0 5 1033 594 265 7 20 chr4 58830990 58831140 -96798980 - B1_Mur1 SINE Alu -1 148 1 5 1033 645 147 0 0 chr4 58831228 58831337 -96798783 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1033 320 268 0 35 chr4 58831378 58831463 -96798657 + PB1D10 SINE Alu 13 94 -23 5 1033 237 315 35 35 chr4 58831463 58831493 -96798627 + ID_B1 SINE B4 94 208 -16 5 1033 29 0 0 0 chr4 58834136 58834165 -96795955 + AT_rich Low_complexity Low_complexity 1 29 0 5 1033 207 0 0 0 chr4 58834165 58834188 -96795932 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1033 22 56 0 0 chr4 58834730 58834766 -96795354 + AT_rich Low_complexity Low_complexity 1 36 0 5 1033 337 306 139 0 chr4 58835546 58835654 -96794466 + PB1 SINE Alu 1 123 -4 5 1033 245 345 0 0 chr4 58835686 58835744 -96794376 + ID4 SINE ID 18 75 -8 5 1033 180 315 29 98 chr4 58835941 58836043 -96794077 - L2 LINE L2 -786 2633 2539 5 1033 1114 145 45 0 chr4 58836494 58836694 -96793426 - Lx LINE L1 -4 6650 6442 5 1033 884 102 8 0 chr4 58836695 58836822 -96793298 + Lx2 LINE L1 6173 6300 -697 5 1033 288 300 60 4 chr4 58837464 58837564 -96792556 + ID4 SINE ID 1 110 -42 5 1033 478 312 14 28 chr4 58837908 58838050 -96792070 + ORR1E LTR MaLR 1 140 -219 5 1033 205 337 39 19 chr4 58838269 58838372 -96791748 + MER91B DNA Tip100 64 168 -22 5 1033 312 327 153 75 chr4 58838895 58839176 -96790944 + LTR16A LTR ERVL 149 451 0 5 1033 289 259 0 76 chr4 58840664 58840756 -96789364 - PB1D10 SINE Alu -17 100 16 5 1033 22 70 0 0 chr4 58841550 58841593 -96788527 + AT_rich Low_complexity Low_complexity 1 43 0 5 1033 344 265 71 71 chr4 58842376 58842502 -96787618 - RSINE1 SINE B4 -1 164 39 5 1033 586 239 36 22 chr4 58842568 58842705 -96787415 - B1F SINE Alu 0 149 11 5 1033 189 107 0 0 chr4 58842887 58842915 -96787205 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 5 1033 715 202 39 0 chr4 58842936 58843065 -96787055 - B1_Mur2 SINE Alu -15 134 1 5 1033 182 62 31 0 chr4 58843391 58843423 -96786697 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 5 1033 438 234 118 21 chr4 58843818 58843962 -96786158 + L1MC4 LINE L1 7878 8035 -7 5 1033 710 195 197 22 chr4 58844646 58844824 -96785296 + B3 SINE B2 2 210 -6 5 1033 189 107 0 0 chr4 58844824 58844852 -96785268 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 1033 372 200 0 0 chr4 58844906 58844991 -96785129 + GA-rich Low_complexity Low_complexity 2 86 0 5 1033 2130 116 3 21 chr4 58845012 58845339 -96784781 + RLTR9B LTR ERVK 117 437 0 5 1033 225 35 0 0 chr4 58845339 58845368 -96784752 + MTB_Mm LTR MaLR 379 407 0 5 1033 477 266 20 8 chr4 58845368 58845490 -96784630 + B3 SINE B2 70 194 -4 5 1033 22 0 0 0 chr4 58845695 58845717 -96784403 + AT_rich Low_complexity Low_complexity 1 22 0 6 1033 180 345 98 56 chr4 58845936 58846151 -96783969 + MIRb SINE MIR 32 255 -13 6 1033 387 271 56 28 chr4 58847840 58847984 -96782136 - B3 SINE B2 -5 211 64 6 1033 537 229 9 0 chr4 58847998 58848103 -96782017 - B3 SINE B2 -109 107 2 6 1033 21 0 0 0 chr4 58849258 58849279 -96780841 + AT_rich Low_complexity Low_complexity 1 21 0 6 1033 2825 261 89 26 chr4 58849494 58850491 -96779629 + Lx9 LINE L1 6582 7641 -3 6 1033 288 234 374 14 chr4 58850622 58850761 -96779359 - Cheshire DNA MER1_type -2146 274 86 6 1033 270 198 195 11 chr4 58851220 58851307 -96778813 - MER53 DNA hAT -86 107 5 6 1034 180 103 0 0 chr4 58851487 58851496 -96778624 + (A)n Simple_repeat Simple_repeat 1 9 0 6 1034 8643 63 57 7 chr4 58851496 58851636 -96778484 + Lx3_Mus LINE L1 5766 5905 -1104 6 1034 180 0 0 0 chr4 58851636 58851656 -96778464 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1034 8643 63 57 7 chr4 58851656 58851811 -96778309 + Lx3_Mus LINE L1 5906 6102 -907 6 1034 216 0 0 0 chr4 58851811 58851835 -96778285 + (G)n Simple_repeat Simple_repeat 1 24 0 6 1034 8643 63 57 7 chr4 58851835 58852723 -96777397 + Lx3_Mus LINE L1 6103 7008 -1 6 1034 180 103 0 0 chr4 58852723 58852742 -96777378 + (A)n Simple_repeat Simple_repeat 1 19 0 6 1034 1164 56 7 0 chr4 58852931 58853075 -96777045 + B1_Mm SINE Alu 2 146 -1 6 1034 183 42 0 0 chr4 58853147 58853171 -96776949 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1034 508 220 11 40 chr4 58854539 58854676 -96775444 - B3 SINE B2 -66 132 6 6 1034 256 318 87 43 chr4 58854611 58854772 -96775348 - RLTR13D2 LTR ERVK -640 383 216 6 1034 207 188 0 0 chr4 58855661 58855709 -96774411 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 6 1034 914 217 37 0 chr4 58855709 58855898 -96774222 - B3 SINE B2 -13 203 8 6 1034 758 273 44 0 chr4 58855944 58856149 -96773971 - B3 SINE B2 -1 215 2 6 1034 305 281 42 63 chr4 58856155 58856250 -96773870 - B3A SINE B2 -6 192 100 6 1034 333 0 0 0 chr4 58857716 58857753 -96772367 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1034 5499 47 10 3 chr4 58858106 58858789 -96771331 + L1Md_F2 LINE L1 5883 6570 -12 6 1034 475 178 138 63 chr4 58858987 58859161 -96770959 + B2_Mm2 SINE B2 1 187 -8 6 1034 30 27 0 0 chr4 58859369 58859406 -96770714 + AT_rich Low_complexity Low_complexity 1 37 0 6 1034 285 109 0 0 chr4 58859502 58859548 -96770572 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1034 237 328 0 0 chr4 58860151 58860212 -96769908 - tRNA-Ala-GCY_ tRNA tRNA -4 71 11 6 1034 191 136 50 17 chr4 58861295 58861355 -96768765 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 6 1034 1169 55 0 7 chr4 58861797 58861945 -96768175 + B1_Mus2 SINE Alu 1 147 0 6 1034 222 116 0 0 chr4 58861945 58861988 -96768132 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1034 230 299 12 105 chr4 58862021 58862107 -96768013 + ID4_ SINE ID 6 83 0 6 1034 521 247 105 89 chr4 58862109 58862434 -96767686 + L1MA6 LINE L1 5819 6148 -152 6 1034 334 212 259 22 chr4 58864508 58864571 -96765549 + RMER30 DNA MER1_type 2 99 -103 6 1034 576 0 0 0 chr4 58864571 58864635 -96765485 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 6 1034 334 212 259 22 chr4 58864635 58864706 -96765414 + RMER30 DNA MER1_type 100 167 -35 6 1034 732 190 13 72 chr4 58864863 58865016 -96765104 + B1_Mus1 SINE Alu 2 145 -3 6 1034 813 110 17 0 chr4 58865020 58865138 -96764982 + PB1D9 SINE Alu 1 120 0 6 1034 471 291 58 102 chr4 58866165 58866391 -96763729 + B3A SINE B2 1 216 0 6 1034 457 314 16 8 chr4 58866957 58867082 -96763038 - RSINE1 SINE B4 -38 127 2 6 1034 200 330 62 21 chr4 58867115 58867211 -96762909 + MIRb SINE MIR 157 256 -12 6 1034 3406 247 58 135 chr4 58867572 58868927 -96761193 + RMER1C Other Other 71 1321 -21 6 1034 358 336 103 8 chr4 58869070 58869196 -96760924 + RSINE1 SINE B4 13 150 -15 6 1034 266 308 87 11 chr4 58869244 58869428 -96760692 + L1M3 LINE L1 3815 4012 -2128 6 1034 2600 110 24 12 chr4 58870487 58870910 -96759210 + Lx3C LINE L1 6547 6974 -2 6 1034 1276 82 38 0 chr4 58870915 58871099 -96759021 + B2_Mm1t SINE B2 1 191 -2 6 1034 1058 169 36 27 chr4 58871381 58871606 -96758514 - ORR1D1 LTR MaLR 0 374 148 6 1034 302 169 11 33 chr4 58871609 58871701 -96758419 + GA-rich Low_complexity Low_complexity 6 95 0 6 1034 772 184 42 84 chr4 58871703 58871893 -96758227 - ORR1D1 LTR MaLR -192 182 1 6 1034 798 284 41 30 chr4 58871959 58872228 -96757892 + Lx8 LINE L1 6304 6575 -898 6 1034 365 349 29 12 chr4 58872214 58872385 -96757735 + Lx8 LINE L1 7060 7233 -463 6 1034 289 169 260 0 chr4 58872383 58872460 -96757660 + Lx8 LINE L1 7371 7467 -6 6 1034 229 263 26 13 chr4 58872492 58872569 -96757551 + L1M3 LINE L1 5206 5283 -863 6 1034 647 275 128 16 chr4 58873102 58873582 -96756538 + L1MB2 LINE L1 5607 6176 -7 6 1034 210 188 0 20 chr4 58873953 58874002 -96756118 + T-rich Low_complexity Low_complexity 1 48 0 6 1034 923 149 7 0 chr4 58874003 58874151 -96755969 - B1_Mur4 SINE Alu 0 150 2 6 1034 21 0 0 0 chr4 58874229 58874250 -96755870 + AT_rich Low_complexity Low_complexity 1 21 0 6 1034 1008 218 5 14 chr4 58874599 58874808 -96755312 + B3 SINE B2 5 211 -5 6 1034 3121 70 2 0 chr4 58874911 58875310 -96754810 + MTB LTR MaLR 1 400 0 6 1034 29 47 0 0 chr4 58875322 58875365 -96754755 + AT_rich Low_complexity Low_complexity 1 43 0 6 1034 1032 297 130 37 chr4 58875423 58876039 -96754081 - Charlie1a DNA MER1_type -299 1156 484 6 1034 251 214 43 43 chr4 58876083 58876176 -96753944 + CT-rich Low_complexity Low_complexity 5 97 0 6 1034 263 342 165 19 chr4 58876198 58876356 -96753764 - Charlie1a DNA MER1_type -1263 192 12 6 1034 588 329 51 51 chr4 58876685 58876980 -96753140 + MER58B DNA MER1_type 10 304 -37 6 1034 1181 56 0 0 chr4 58877489 58877632 -96752488 + B1_Mus2 SINE Alu 3 145 -2 6 1034 207 0 0 0 chr4 58878398 58878421 -96751699 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1034 818 158 7 27 chr4 58878434 58878584 -96751536 - B1_Mur4 SINE Alu -2 148 2 6 1034 373 250 6 136 chr4 58878584 58878644 -96751476 - MT2B LTR ERVL -454 147 111 6 1034 3629 60 29 6 chr4 58879005 58879488 -96750632 + L1_Mus1 LINE L1 6074 6567 0 6 1034 1042 103 0 0 chr4 58879501 58879646 -96750474 + B1_Mm SINE Alu 2 146 -1 6 1034 305 108 10 146 chr4 58879656 58879862 -96750258 + GA-rich Low_complexity Low_complexity 3 180 0 6 1034 492 254 0 0 chr4 58879847 58879981 -96750139 + A-rich Low_complexity Low_complexity 1 134 0 6 1034 2819 239 91 12 chr4 58880102 58880979 -96749141 + RCHARR1 DNA MER1_type 6 951 -23 6 1034 248 208 0 153 chr4 58880981 58881066 -96749054 + RCHARR1 DNA MER1_type 903 974 0 6 1034 212 317 99 0 chr4 58881310 58881411 -96748709 + PB1D10 SINE Alu 3 113 -4 6 1034 280 231 71 2 chr4 58881451 58881536 -96748584 - PB1D9 SINE Alu -15 105 16 6 1034 249 182 0 0 chr4 58881652 58881707 -96748413 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 6 1034 507 307 120 12 chr4 58882529 58882770 -96747350 - MIRb SINE MIR 0 268 2 6 1034 21 82 0 0 chr4 58883156 58883205 -96746915 + AT_rich Low_complexity Low_complexity 1 49 0 6 1034 210 37 0 0 chr4 58883539 58883566 -96746554 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1034 351 252 9 75 chr4 58883716 58883823 -96746297 - PB1D10 SINE Alu -5 112 13 6 1034 622 274 56 17 chr4 58883730 58883908 -96746212 - ID_B1 SINE B4 -39 185 1 6 1034 26 30 0 0 chr4 58883953 58883986 -96746134 + AT_rich Low_complexity Low_complexity 1 33 0 6 1034 781 132 36 14 chr4 58884000 58884138 -96745982 + B1_Mus2 SINE Alu 1 141 -6 6 1034 369 62 0 0 chr4 58884139 58884187 -96745933 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1034 330 268 14 0 chr4 58884488 58884559 -96745561 + MIRb SINE MIR 163 234 -34 6 1034 1095 182 26 0 chr4 58885744 58885936 -96744184 + URR1B DNA MER1_type 3 199 -26 6 1034 807 139 85 0 chr4 58886011 58886140 -96743980 - B1_Mus1 SINE Alu -7 141 2 6 1034 540 45 0 0 chr4 58886163 58886230 -96743890 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1034 426 230 39 39 chr4 58886558 58886662 -96743458 + RSINE1 SINE B4 1 104 -61 6 1034 553 275 10 84 chr4 58886995 58887183 -96742937 + ORR1D2 LTR MaLR 12 199 -160 6 1034 739 178 0 8 chr4 58888606 58888725 -96741395 + B1_Mur4 SINE Alu 27 144 -6 6 1034 504 172 213 39 chr4 58888759 58888886 -96741234 + B1_Mur3 SINE Alu 1 149 0 6 1034 769 249 19 24 chr4 58889391 58889597 -96740523 - B3 SINE B2 -7 209 5 6 1034 274 274 88 7 chr4 58891109 58891245 -96738875 - L1MA6 LINE L1 -24 6276 6130 6 1034 333 319 0 41 chr4 58891301 58891399 -96738721 - PB1 SINE Alu -30 97 4 6 1034 279 266 25 0 chr4 58891509 58891588 -96738532 - L1MA6 LINE L1 -309 5991 5911 6 1034 216 0 0 0 chr4 58891730 58891754 -96738366 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1034 419 357 14 5 chr4 58892792 58893006 -96737114 - L1M5 LINE L1 -460 5713 5498 6 1034 821 182 13 20 chr4 58893127 58893278 -96736842 + B1_Mur4 SINE Alu 1 150 0 6 1034 23 68 0 0 chr4 58893566 58893610 -96736510 + AT_rich Low_complexity Low_complexity 1 44 0 6 1034 350 274 82 21 chr4 58893701 58893798 -96736322 + MIR SINE MIR 74 176 -86 6 1034 23 0 0 0 chr4 58894596 58894619 -96735501 + AT_rich Low_complexity Low_complexity 1 23 0 6 1034 569 158 109 0 chr4 58894665 58894766 -96735354 + B1_Mur4 SINE Alu 1 112 -38 6 1034 561 207 74 0 chr4 58894846 58894967 -96735153 + B1_Mur4 SINE Alu 1 130 -20 6 1034 1401 55 27 27 chr4 58895226 58895414 -96734706 + B2_Mm2 SINE B2 1 188 -7 6 1034 255 31 0 0 chr4 58895491 58895523 -96734597 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 6 1034 792 254 66 75 chr4 58895592 58895818 -96734302 + B4A SINE B4 2 225 -67 6 1034 919 221 34 14 chr4 58895822 58896029 -96734091 + B3 SINE B2 3 213 -3 7 1034 1677 43 0 9 chr4 58896046 58896258 -96733862 + L1_Mus1 LINE L1 6358 6567 0 7 1034 1552 48 0 0 chr4 58896465 58896653 -96733467 + B2_Mm1t SINE B2 1 188 -5 7 1034 661 306 68 10 chr4 58897062 58897386 -96732734 + ORR1E LTR MaLR 13 379 0 7 1034 194 338 73 0 chr4 58897458 58897526 -96732594 - L2 LINE L2 -528 2891 2819 7 1034 21 57 0 0 chr4 58897796 58897831 -96732289 + AT_rich Low_complexity Low_complexity 1 35 0 7 1034 180 0 0 0 chr4 58898172 58898192 -96731928 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1034 181 0 0 65 chr4 58898660 58898691 -96731429 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1034 462 301 0 42 chr4 58899104 58899220 -96730900 + PB1D7 SINE Alu 3 113 -7 7 1034 288 295 66 54 chr4 58899220 58899379 -96730741 + B4 SINE B4 2 151 -141 7 1034 329 75 19 0 chr4 58899483 58899536 -96730584 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1034 503 154 240 0 chr4 58899845 58899949 -96730171 - B3 SINE B2 -87 129 1 7 1034 284 269 206 40 chr4 58900043 58900392 -96729728 + L1MD3 LINE L1 6707 7113 -882 7 1034 225 210 149 65 chr4 58900391 58900498 -96729622 + L1MD3 LINE L1 7321 7436 -559 7 1034 1717 161 8 37 chr4 58900620 58900974 -96729146 + RMER1A Other Other 682 1025 -5 7 1034 383 140 0 0 chr4 58901125 58901182 -96728938 - B1_Mus2 SINE Alu -6 141 85 7 1034 345 276 28 9 chr4 58901543 58901649 -96728471 + PB1D10 SINE Alu 1 108 -9 7 1034 461 291 43 81 chr4 58901669 58901830 -96728290 + RSINE1 SINE B4 11 165 0 7 1034 460 313 142 0 chr4 58902058 58902192 -96727928 + ID_B1 SINE B4 67 219 -5 7 1034 358 186 0 0 chr4 58902216 58902286 -96727834 + MLT1A1 LTR MaLR 335 404 -4 7 1034 953 275 202 0 chr4 58902608 58902909 -96727211 + MTEa LTR MaLR 18 379 0 7 1034 890 256 75 53 chr4 58902933 58903229 -96726891 - B4A SINE B4 -1 291 7 7 1034 24 32 0 0 chr4 58903264 58903295 -96726825 + AT_rich Low_complexity Low_complexity 1 31 0 7 1034 610 218 42 14 chr4 58903366 58903510 -96726610 - B1_Mur2 SINE Alu 0 149 2 7 1034 218 333 64 0 chr4 58903621 58903699 -96726421 - B1F SINE Alu -49 100 18 7 1034 559 241 14 34 chr4 58903834 58903980 -96726140 - RSINE1 SINE B4 -19 146 4 7 1034 1372 246 117 75 chr4 58904235 58904705 -96725415 + MER68 LTR ERVL 74 563 0 7 1034 939 68 272 0 chr4 58904982 58905129 -96724991 + B2_Mm2 SINE B2 1 187 -8 7 1034 291 313 121 0 chr4 58905137 58905236 -96724884 + PB1D10 SINE Alu 1 111 -6 7 1034 213 364 65 0 chr4 58905300 58905377 -96724743 + ID4_ SINE ID 2 83 0 7 1034 1451 277 16 70 chr4 58905429 58905639 -96724481 - MTEa LTR MaLR -12 367 172 7 1034 706 253 35 64 chr4 58905639 58905842 -96724278 - B3A SINE B2 0 198 2 7 1034 1451 277 16 70 chr4 58905842 58906019 -96724101 - MTEa LTR MaLR -208 171 1 7 1034 228 159 72 0 chr4 58906122 58906191 -96723929 + GA-rich Low_complexity Low_complexity 2 75 0 7 1034 180 152 0 0 chr4 58906240 58906273 -96723847 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 7 1034 21 0 0 0 chr4 58906544 58906565 -96723555 + AT_rich Low_complexity Low_complexity 1 21 0 7 1034 442 274 24 64 chr4 58906838 58906963 -96723157 - RSINE1 SINE B4 -38 127 8 7 1034 246 279 72 48 chr4 58907055 58907221 -96722899 + L1M5 LINE L1 3706 3875 -2271 7 1034 932 217 29 0 chr4 58907449 58907656 -96722464 + B3 SINE B2 4 216 0 7 1034 24 0 0 0 chr4 58907658 58907682 -96722438 + AT_rich Low_complexity Low_complexity 1 24 0 7 1034 312 91 0 0 chr4 58907695 58907739 -96722381 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 7 1034 3825 91 125 8 chr4 58907740 58908340 -96721780 + Lx2 LINE L1 6328 6997 0 7 1034 250 273 167 0 chr4 58908363 58908429 -96721691 + ID4 SINE ID 2 78 -5 7 1034 180 0 0 0 chr4 58908429 58908449 -96721671 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1034 362 284 112 46 chr4 58908451 58908695 -96721425 + L1M5 LINE L1 4083 4379 -1767 7 1034 281 333 20 0 chr4 58908695 58908794 -96721326 + PB1D10 SINE Alu 3 103 -14 7 1034 362 275 119 66 chr4 58908794 58908940 -96721180 + L1M5 LINE L1 4380 4529 -1617 7 1034 303 245 105 68 chr4 58909200 58909362 -96720758 + L1M5 LINE L1 4549 4716 -1430 7 1034 460 322 102 63 chr4 58909423 58909708 -96720412 + L1M5 LINE L1 4730 5025 -1121 7 1034 227 306 16 0 chr4 58909713 58909775 -96720345 + BC1_Mm scRNA scRNA 18 80 -72 7 1034 409 299 35 84 chr4 58910705 58910931 -96719189 + L1M5 LINE L1 4618 4832 -1314 7 1034 25 51 0 0 chr4 58911809 58911848 -96718272 + AT_rich Low_complexity Low_complexity 1 39 0 7 1034 762 93 0 0 chr4 58912001 58912109 -96718011 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1034 241 333 14 14 chr4 58912445 58912518 -96717602 + ID4 SINE ID 1 73 -10 7 1034 267 295 84 0 chr4 58913675 58913776 -96716344 - B1F2 SINE Alu -8 109 1 7 1034 645 303 85 22 chr4 58915876 58916146 -96713974 + RMER15 LTR ERVL 275 561 -14 7 1034 426 270 88 0 chr4 58916753 58916890 -96713230 - B1F2 SINE Alu 0 149 1 7 1034 423 224 0 76 chr4 58918381 58918473 -96711647 + PB1D10 SINE Alu 33 117 0 7 1034 372 306 59 75 chr4 58918655 58918881 -96711239 - MIRb SINE MIR -31 237 8 7 1034 504 0 0 0 chr4 58919524 58919580 -96710540 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 7 1034 207 0 0 0 chr4 58920432 58920455 -96709665 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1034 30 0 0 0 chr4 58921256 58921286 -96708834 + AT_rich Low_complexity Low_complexity 1 30 0 7 1034 447 210 20 19 chr4 58921811 58921916 -96708204 + PB1 SINE Alu 24 120 0 7 1034 930 265 118 49 chr4 58922562 58922701 -96707419 + L1MB3 LINE L1 5447 5596 -584 7 1034 231 234 11 154 chr4 58922701 58922792 -96707328 + ID4 SINE ID 3 80 -3 7 1034 1024 236 102 66 chr4 58922792 58923327 -96706793 + L1MB3 LINE L1 5597 6180 -3 7 1034 365 273 62 35 chr4 58923563 58923707 -96706413 + MIRc SINE MIR 106 253 -15 7 1034 24 0 0 0 chr4 58924544 58924568 -96705552 + GC_rich Low_complexity Low_complexity 1 24 0 7 1034 24 53 0 0 chr4 58924805 58924843 -96705277 + GC_rich Low_complexity Low_complexity 1 38 0 7 1034 276 130 0 0 chr4 58924844 58924890 -96705230 + (CCGCG)n Simple_repeat Simple_repeat 4 49 0 7 1034 235 226 42 31 chr4 58925146 58925242 -96704878 + (CCCG)n Simple_repeat Simple_repeat 3 99 0 7 1034 222 37 0 0 chr4 58925621 58925648 -96704472 + (GGA)n Simple_repeat Simple_repeat 1 27 0 7 1034 408 40 0 0 chr4 58926418 58926468 -96703652 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1034 279 0 0 0 chr4 58926468 58926498 -96703622 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1034 435 292 89 110 chr4 58926607 58926899 -96703221 + ORR1D2 LTR MaLR 77 362 -8 7 1034 1006 195 29 14 chr4 58927419 58927627 -96702493 + B3 SINE B2 1 211 -5 7 1034 233 204 0 0 chr4 58929497 58929541 -96700579 + (TTGTG)n Simple_repeat Simple_repeat 3 46 0 7 1034 356 274 123 0 chr4 58929733 58929839 -96700281 - B1F1 SINE Alu -27 122 4 7 1034 1156 239 21 11 chr4 58929974 58930261 -96699859 + B4A SINE B4 2 291 -1 7 1034 22 70 0 0 chr4 58930510 58930553 -96699567 + AT_rich Low_complexity Low_complexity 1 43 0 7 1034 653 294 97 61 chr4 58930599 58930929 -96699191 - RLTR12B LTR ERVK -186 342 1 7 1034 549 189 16 16 chr4 58930929 58931058 -96699062 - MYSERV-int LTR ERVK 0 6550 6422 7 1034 1847 152 37 23 chr4 58931064 58931413 -96698707 + ORR1B1 LTR MaLR 41 394 0 7 1034 4152 166 28 6 chr4 58931413 58932226 -96697894 - MYSERV6-int LTR ERVK -102 8857 8094 7 1034 2667 184 81 63 chr4 58932246 58933052 -96697068 - RMER19B LTR ERVK 0 902 1 7 1034 761 200 104 21 chr4 58933059 58933299 -96696821 - MYSERV-int LTR ERVK -971 5579 5320 7 1034 505 272 41 132 chr4 58933312 58933532 -96696588 - RMER4A LTR ERVK -28 438 239 7 1034 1421 211 41 19 chr4 58933532 58933766 -96696354 - MYSERV-int LTR ERVK -1462 5088 4855 7 1034 5844 191 41 16 chr4 58933766 58934661 -96695459 - Lx5 LINE L1 0 7050 6127 7 1034 3110 47 42 0 chr4 58934661 58935045 -96695075 + MTB LTR MaLR 1 400 0 7 1034 5844 191 41 16 chr4 58935045 58935380 -96694740 - Lx5 LINE L1 -924 6126 5789 7 1034 1421 211 41 19 chr4 58935380 58935508 -96694612 - MYSERV-int LTR ERVK -1696 4854 4719 7 1034 2137 93 0 74 chr4 58935508 58935844 -96694276 + ORR1A4 LTR MaLR 1 311 -18 7 1034 413 253 38 108 chr4 58935879 58935934 -96694186 - MYSERV-int LTR ERVK -1902 4648 4595 7 1034 1186 86 107 11 chr4 58935934 58936088 -96694032 + B2_Mm2 SINE B2 2 153 -42 7 1034 468 0 0 0 chr4 58936088 58936140 -96693980 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 7 1034 1186 86 107 11 chr4 58936140 58936162 -96693958 + B2_Mm2 SINE B2 154 194 -1 7 1034 413 253 38 108 chr4 58936162 58936292 -96693828 - MYSERV-int LTR ERVK -1956 4594 4476 7 1034 1257 152 25 0 chr4 58936318 58936562 -96693558 - MYSERV-int LTR ERVK -4543 4416 4167 7 1034 1216 248 76 16 chr4 58936560 58936876 -96693244 - MYSERV-int LTR ERVK -4602 1948 1614 7 1034 3900 146 47 86 chr4 58936898 58937785 -96692335 - RLTR19-int LTR ERVK -3259 2878 2026 7 1034 2508 133 0 0 chr4 58937785 58938199 -96691921 - L1_Mm LINE L1 -827 5056 4643 7 1034 2740 137 8 15 chr4 58938199 58938675 -96691445 - RLTR19-int LTR ERVK -5042 1095 623 7 1034 1987 204 29 31 chr4 58938681 58939166 -96690954 - RLTR20C LTR ERVK -2 532 49 7 1034 1885 134 9 38 chr4 58939221 58939562 -96690558 - RLTR19-int LTR ERVK -5518 619 289 7 1034 23 33 0 0 chr4 58939602 58939632 -96690488 + AT_rich Low_complexity Low_complexity 1 30 0 7 1034 1029 193 43 39 chr4 58939846 58940078 -96690042 - RMER19B LTR ERVK -12 890 658 7 1034 250 309 0 69 chr4 58940024 58940125 -96689995 + B3 SINE B2 104 197 -19 7 1034 557 205 194 13 chr4 58940629 58940786 -96689334 + B3 SINE B2 2 189 -9 7 1034 1815 103 103 0 chr4 58940786 58941067 -96689053 + Lx4A LINE L1 6749 7058 0 7 1034 793 269 90 16 chr4 58941891 58942201 -96687919 - L1M2 LINE L1 -483 5808 5476 7 1034 2381 314 95 29 chr4 58942381 58944159 -96685961 - L1M2 LINE L1 -765 5378 3455 7 1034 238 269 0 0 chr4 58944188 58944240 -96685880 + MTE2b LTR MaLR 1 52 -327 7 1034 309 298 74 6 chr4 58944350 58944497 -96685623 + MIR SINE MIR 18 175 -33 7 1034 860 252 63 4 chr4 58944565 58944820 -96685300 + B4A SINE B4 2 271 -21 7 1034 246 313 68 25 chr4 58944906 58945024 -96685096 - HAL1 LINE L1 -2326 181 59 7 1034 424 212 85 66 chr4 58945509 58945615 -96684505 - PB1D10 SINE Alu -9 108 1 7 1034 208 245 0 19 chr4 58945773 58945827 -96684293 + CT-rich Low_complexity Low_complexity 3 55 0 7 1034 233 281 33 48 chr4 58945905 58946015 -96684105 - ID4 SINE ID -31 121 11 7 1034 2738 113 159 6 chr4 58946187 58946678 -96683442 + RMER4B LTR ERVK 20 585 0 8 1034 590 284 39 10 chr4 58946686 58946865 -96683255 + L1MA6 LINE L1 6068 6254 -46 8 1034 503 292 109 0 chr4 58946865 58947012 -96683108 + RSINE1 SINE B4 3 165 0 8 1034 590 284 39 10 chr4 58947012 58947035 -96683085 + L1MA6 LINE L1 6255 6276 -24 8 1034 183 80 0 0 chr4 58947038 58947063 -96683057 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 8 1034 918 260 53 62 chr4 58947108 58947575 -96682545 + RLTR12B LTR ERVK 47 509 -19 8 1034 314 93 19 0 chr4 58947577 58947631 -96682489 + L1MA4A LINE L1 6249 6303 0 8 1034 235 300 39 39 chr4 58948155 58948259 -96681861 + MER57C2 LTR ERV1 237 340 -94 8 1034 306 0 0 0 chr4 58948507 58948541 -96681579 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1034 221 350 25 8 chr4 58948692 58948813 -96681307 + L4 LINE RTE 1682 1804 -225 8 1034 210 37 0 0 chr4 58949163 58949190 -96680930 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1034 302 158 18 0 chr4 58949601 58949658 -96680462 - ID4_ SINE ID -22 61 4 8 1034 198 0 0 0 chr4 58949757 58949779 -96680341 + (CCA)n Simple_repeat Simple_repeat 3 24 0 8 1034 231 306 61 37 chr4 58949964 58950127 -96679993 - L1M5 LINE L1 -324 5855 5689 8 1034 980 155 0 0 chr4 58950153 58950301 -96679819 - B1_Mus1 SINE Alu 0 148 1 8 1034 251 226 106 12 chr4 58950308 58950393 -96679727 - MLT1A1 LTR MaLR -16 392 300 8 1034 516 238 0 9 chr4 58950896 58951002 -96679118 + 5S rRNA rRNA 1 105 -16 8 1034 246 263 95 0 chr4 58951002 58951097 -96679023 - L1M5 LINE L1 -282 5897 5794 8 1034 254 198 82 47 chr4 58951282 58951367 -96678753 + MTEa LTR MaLR 278 365 -14 8 1034 440 174 197 36 chr4 58951378 58951515 -96678605 + RSINE1 SINE B4 3 161 -4 8 1034 259 322 7 18 chr4 58951542 58951677 -96678443 - L1M5 LINE L1 -432 5747 5612 8 1034 417 123 0 0 chr4 58951732 58951797 -96678323 + (TCC)n Simple_repeat Simple_repeat 1 65 0 8 1034 760 194 0 0 chr4 58951810 58951949 -96678171 - B1_Mur4 SINE Alu 0 150 12 8 1034 189 333 126 0 chr4 58952068 58952203 -96677917 + L2 LINE L2 1234 1385 -2034 8 1034 1336 98 16 16 chr4 58952446 58952633 -96677487 - B2_Mm2 SINE B2 -7 188 2 8 1034 485 272 26 17 chr4 58953036 58953152 -96676968 - PB1D10 SINE Alu 0 117 1 8 1034 655 278 28 95 chr4 58953180 58953391 -96676729 + ID_B1 SINE B4 2 198 -26 8 1034 874 224 120 0 chr4 58953401 58953593 -96676527 + B3 SINE B2 1 215 -1 8 1034 300 288 61 106 chr4 58954052 58954297 -96675823 + RMER2 LTR ERV1 334 567 0 8 1034 1423 141 23 0 chr4 58954369 58954589 -96675531 - URR1B DNA MER1_type 0 225 1 8 1034 366 285 27 34 chr4 58954731 58954880 -96675240 + L1ME3A LINE L1 5790 5937 -236 8 1034 1446 67 0 35 chr4 58954931 58955086 -96675034 + B2_Mm2 SINE B2 2 155 -40 8 1034 369 0 0 0 chr4 58955086 58955127 -96674993 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1034 1446 67 0 35 chr4 58955127 58955172 -96674948 + B2_Mm2 SINE B2 156 195 0 8 1034 1463 190 89 18 chr4 58955586 58955924 -96674196 + MTE2b LTR MaLR 18 379 0 8 1034 367 311 19 104 chr4 58956723 58956935 -96673185 - MER20 DNA MER1_type -11 208 15 8 1034 207 0 0 0 chr4 58957432 58957455 -96672665 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 8 1034 239 166 86 0 chr4 58957458 58957514 -96672606 - ID4 SINE ID -14 69 2 8 1034 729 186 98 33 chr4 58957517 58957700 -96672420 - B3 SINE B2 -5 211 17 8 1034 888 225 10 0 chr4 58958049 58958249 -96671871 + B3 SINE B2 9 210 -6 8 1034 1206 61 0 0 chr4 58958510 58958657 -96671463 - B1_Mus1 SINE Alu 0 148 2 8 1034 1426 84 114 0 chr4 58959544 58959746 -96670374 + URR1A DNA MER1_type 2 226 0 8 1034 312 27 0 0 chr4 58960296 58960333 -96669787 + (TC)n Simple_repeat Simple_repeat 2 38 0 8 1034 1347 82 16 27 chr4 58960333 58960520 -96669600 - B2_Mm2 SINE B2 -10 185 1 8 1034 1193 50 0 0 chr4 58960699 58960838 -96669282 + B1_Mm SINE Alu 1 139 -8 8 1034 244 330 11 11 chr4 58961062 58961151 -96668969 + MER21B LTR ERV1 1 89 -774 8 1034 470 245 171 79 chr4 58961334 58961649 -96668471 + MER21B LTR ERV1 181 524 -339 8 1034 288 357 32 19 chr4 58962012 58962169 -96667951 + RSINE1 SINE B4 4 162 -3 8 1034 951 136 7 0 chr4 58962756 58962896 -96667224 + B1_Mus1 SINE Alu 2 142 -6 8 1034 271 250 102 51 chr4 58963058 58963070 -96667050 + MLT1C LTR MaLR 270 283 -222 8 1034 3508 40 33 16 chr4 58963070 58963499 -96666621 - RLTR10C LTR ERVK 0 436 1 8 1034 378 228 65 45 chr4 58963499 58963664 -96666456 + MLT1C LTR MaLR 258 420 -47 8 1034 251 297 75 21 chr4 58963777 58963870 -96666250 + PB1D7 SINE Alu 1 98 -22 8 1034 376 276 29 0 chr4 58963996 58964101 -96666019 + PB1D7 SINE Alu 1 108 -12 8 1034 751 290 14 19 chr4 58964171 58964385 -96665735 + B3 SINE B2 4 216 0 8 1034 224 136 27 108 chr4 58964397 58964408 -96665712 + B4A SINE B4 81 85 -207 8 1034 364 172 125 31 chr4 58964408 58964504 -96665616 + PB1 SINE Alu 3 107 -20 8 1034 279 0 0 0 chr4 58964589 58964620 -96665500 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1034 334 286 17 8 chr4 58964693 58964813 -96665307 + MurSatRep1 Unknown Unknown 607 727 -1410 8 1034 470 273 129 54 chr4 58965428 58965707 -96664413 - LTR16B2 LTR ERVL -5 457 158 8 1034 364 286 10 0 chr4 58966073 58966171 -96663949 + Tigger5 DNA MER2_type 2308 2406 0 8 1034 27 49 0 0 chr4 58966405 58966446 -96663674 + AT_rich Low_complexity Low_complexity 1 41 0 8 1034 279 0 0 0 chr4 58966945 58966976 -96663144 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1034 252 240 0 0 chr4 58966991 58967041 -96663079 - tRNA-Ala-GCY_ tRNA tRNA -24 51 2 8 1034 681 205 168 94 chr4 58967189 58967398 -96662722 + B3 SINE B2 14 216 0 8 1034 675 63 0 0 chr4 58967532 58967627 -96662493 - L1_Mus1 LINE L1 0 6567 6473 8 1034 800 193 0 14 chr4 58967648 58967790 -96662330 - B1_Mur3 SINE Alu 0 149 10 8 1034 551 310 75 30 chr4 58967863 58968129 -96661991 + B4A SINE B4 1 278 -14 8 1034 438 36 0 0 chr4 58968169 58968225 -96661895 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1034 396 337 33 56 chr4 58968602 58968657 -96661463 + MIR SINE MIR 5 55 -207 8 1034 789 176 156 21 chr4 58968657 58968843 -96661277 + B3 SINE B2 1 211 -5 8 1034 396 337 33 56 chr4 58968843 58969001 -96661119 + MIR SINE MIR 56 213 -49 8 1034 388 281 39 39 chr4 58970091 58970372 -96659748 + MMSAT4 Satellite Satellite 1 281 0 8 1034 252 250 0 0 chr4 58970426 58970486 -96659634 + MMSAT4 Satellite Satellite 30 89 -79 8 1034 357 237 25 25 chr4 58970523 58970644 -96659476 + MMSAT4 Satellite Satellite 43 163 -5 8 1034 355 294 82 13 chr4 58971063 58971240 -96658880 + MIR3 SINE MIR 10 201 -7 8 1034 22 0 0 0 chr4 58972635 58972657 -96657463 + AT_rich Low_complexity Low_complexity 1 22 0 8 1034 674 288 165 45 chr4 58972697 58973405 -96656715 - L1MB7 LINE L1 -76 6108 5320 8 1034 1364 310 130 45 chr4 58974165 58975006 -96655114 - Charlie5 DNA MER1_type -1084 1540 647 8 1034 267 103 0 0 chr4 58975006 58975045 -96655075 + (CTG)n Simple_repeat Simple_repeat 1 39 0 8 1034 1364 310 130 45 chr4 58975045 58975513 -96654607 - Charlie5 DNA MER1_type -1978 646 120 8 1034 3132 37 8 3 chr4 58975535 58975914 -96654206 - L1Md_F2 LINE L1 0 6582 6202 8 1034 776 263 24 24 chr4 58977117 58977366 -96652754 - B4A SINE B4 -40 252 4 8 1034 747 183 56 7 chr4 58977917 58978060 -96652060 + B1_Mur4 SINE Alu 1 150 0 8 1034 918 161 7 0 chr4 58978301 58978444 -96651676 + B1_Mur4 SINE Alu 1 144 -6 8 1034 408 179 41 21 chr4 58979164 58979261 -96650859 + MTD LTR MaLR 276 374 -45 8 1034 274 245 152 10 chr4 58980102 58980201 -96649919 - PB1D10 SINE Alu -4 113 1 8 1034 824 250 167 43 chr4 58980467 58980814 -96649306 + MLT1B LTR MaLR 1 390 0 8 1034 185 357 69 38 chr4 58981167 58981298 -96648822 - L2 LINE L2 -1421 1998 1864 8 1034 277 279 0 0 chr4 58981333 58981394 -96648726 + PB1D10 SINE Alu 5 65 -52 8 1034 284 302 23 0 chr4 58981921 58982007 -96648113 + MLT1D LTR MaLR 1 88 -417 8 129 1117 226 89 11 chr4 58982375 58982644 -96647476 + B4A SINE B4 3 292 0 8 1035 522 167 0 0 chr4 58984096 58984180 -96645940 + ID_B1 SINE B4 120 203 -21 8 1035 369 280 186 52 chr4 58984333 58984812 -96645308 + L1MB7 LINE L1 4698 5240 -906 8 1035 253 290 139 10 chr4 58984813 58984914 -96645206 - MER82 DNA MER2_type 0 653 540 8 1035 242 215 231 0 chr4 58985189 58985254 -96644866 - MER82 DNA MER2_type -560 93 14 8 1035 1571 258 73 11 chr4 58985327 58985860 -96644260 + L1MB7 LINE L1 5343 5908 -276 8 1035 246 279 25 12 chr4 58985988 58986068 -96644052 - ID4 SINE ID 0 83 3 8 1035 234 91 0 0 chr4 58986089 58986122 -96643998 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 8 1035 417 262 10 0 chr4 58986135 58986238 -96643882 - PB1D10 SINE Alu -13 104 1 8 1035 366 23 0 0 chr4 58987376 58987419 -96642701 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1035 606 196 135 0 chr4 58987419 58987552 -96642568 - B3A SINE B2 -44 154 4 8 1035 429 256 23 88 chr4 58987663 58987834 -96642286 - RSINE1 SINE B4 -3 162 3 8 1035 376 183 0 40 chr4 58988023 58988097 -96642023 + tRNA-Ala-GCY_ tRNA tRNA 2 72 -3 8 1035 249 159 0 0 chr4 58988386 58988430 -96641690 + (CTA)n Simple_repeat Simple_repeat 1 44 0 8 1035 247 289 0 0 chr4 58988430 58988482 -96641638 + (CAG)n Simple_repeat Simple_repeat 3 54 0 8 1035 326 198 33 8 chr4 58988887 58989009 -96641111 + CT-rich Low_complexity Low_complexity 3 127 0 8 1035 342 45 0 0 chr4 58989084 58989128 -96640992 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1035 814 145 20 40 chr4 58989425 58989576 -96640544 - B1_Mur1 SINE Alu -1 148 1 8 1035 477 0 0 0 chr4 58989585 58989638 -96640482 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1035 335 167 41 14 chr4 58989640 58989713 -96640407 - PB1D10 SINE Alu -20 97 23 8 1035 233 232 52 21 chr4 58989892 58989989 -96640131 - L1MA7 LINE L1 -15 6276 6177 9 1035 232 318 0 0 chr4 58990224 58990290 -96639830 + MLT1A1 LTR MaLR 49 114 -294 9 1035 259 300 45 132 chr4 58990331 58990619 -96639501 + ORR1E LTR MaLR 97 359 0 9 1035 591 245 75 3 chr4 58990628 58990790 -96639330 - L1MA7 LINE L1 -370 5921 5754 9 1035 21 36 0 0 chr4 58991469 58991497 -96638623 + AT_rich Low_complexity Low_complexity 1 28 0 9 1035 4623 106 79 60 chr4 58991498 58992369 -96637751 + RMER12 LTR ERVK 1 888 -434 9 1035 405 0 0 0 chr4 58992369 58992414 -96637706 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1035 180 0 0 0 chr4 58992414 58992433 -96637687 + (GA)n Simple_repeat Simple_repeat 1 20 0 9 1035 565 221 50 99 chr4 58992435 58992616 -96637504 + RMER12 LTR ERVK 994 1165 -157 9 1035 409 279 24 60 chr4 58993174 58993342 -96636778 + RSINE1 SINE B4 4 165 0 9 1035 380 122 12 0 chr4 58993448 58993530 -96636590 + (CA)n Simple_repeat Simple_repeat 2 84 0 9 1035 546 99 0 0 chr4 58993535 58993626 -96636494 + (CAGAGA)n Simple_repeat Simple_repeat 6 96 0 9 1035 369 293 91 82 chr4 58994010 58994218 -96635902 + MTEa LTR MaLR 1 210 -169 9 1035 353 171 68 8 chr4 58994218 58994336 -96635784 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 9 1035 219 69 0 0 chr4 58995247 58995276 -96634844 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 9 1035 315 0 0 0 chr4 58995402 58995437 -96634683 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1035 1595 221 38 45 chr4 58996201 58996619 -96633501 - MTD LTR MaLR 0 419 5 9 1035 477 0 0 0 chr4 58997164 58997217 -96632903 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 9 1035 226 276 105 0 chr4 58997839 58997915 -96632205 - MIRb SINE MIR -14 254 171 9 1035 260 250 138 0 chr4 58998495 58998575 -96631545 - B3 SINE B2 -125 91 1 9 1035 197 65 0 31 chr4 58998728 58998760 -96631360 + (TTA)n Simple_repeat Simple_repeat 2 32 0 9 1035 227 224 35 0 chr4 58998807 58998865 -96631255 - L1MA4A LINE L1 -308 5995 5936 9 1035 1138 88 7 0 chr4 58998896 58999043 -96631077 - B1_Mus1 SINE Alu 0 148 1 9 1035 346 254 57 33 chr4 58999047 58999169 -96630951 - ID_B1 SINE B4 -2 222 98 9 1035 382 245 99 21 chr4 58999225 58999367 -96630753 - RSINE1 SINE B4 -1 164 12 9 1035 207 88 0 0 chr4 59000706 59000740 -96629380 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1035 256 292 0 0 chr4 59001251 59001316 -96628804 - ID4_ SINE ID -18 65 1 2 1035 259 264 9 36 chr4 59001942 59002052 -96628068 + GA-rich Low_complexity Low_complexity 2 108 0 3 1035 194 176 0 19 chr4 59002053 59002105 -96628015 + A-rich Low_complexity Low_complexity 3 53 0 4 1035 306 196 33 0 chr4 59002110 59002202 -96627918 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 1035 299 247 13 13 chr4 59002494 59002572 -96627548 - LTR83 LTR ERVL -430 350 273 6 1035 247 341 103 16 chr4 59002873 59003058 -96627062 + MLT1J LTR MaLR 219 419 -93 7 1035 1298 155 25 12 chr4 59003156 59003397 -96626723 - ORR1C2 LTR MaLR 0 384 141 8 1035 477 228 140 49 chr4 59004125 59004268 -96625852 + B3A SINE B2 2 157 -41 9 1035 3348 46 5 0 chr4 59004598 59004992 -96625128 + MTA_Mm LTR MaLR 1 396 0 1 1035 835 147 7 20 chr4 59005587 59005733 -96624387 + B1_Mur4 SINE Alu 2 145 -5 1 1035 541 280 84 63 chr4 59005846 59006178 -96623942 + L1MC4 LINE L1 7300 7638 -404 1 1035 250 95 24 0 chr4 59006514 59006556 -96623564 + B1_Mur2 SINE Alu 63 105 -44 1 1035 429 219 26 17 chr4 59006567 59006683 -96623437 - MLT1A0 LTR MaLR -172 193 77 1 1035 5725 125 33 16 chr4 59006756 59007643 -96622477 + RMER19B LTR ERVK 1 902 0 1 1035 1202 29 0 0 chr4 59008963 59009102 -96621018 + B1_Mus2 SINE Alu 1 139 -8 1 1035 654 208 8 0 chr4 59009292 59009422 -96620698 + RSINE1 SINE B4 2 132 -33 1 1035 518 194 0 0 chr4 59009629 59009722 -96620398 + B1_Mus2 SINE Alu 3 95 -52 1 1035 710 191 42 7 chr4 59010447 59010589 -96619531 + B1_Mur1 SINE Alu 1 147 -2 1 1035 235 262 0 32 chr4 59010884 59010947 -96619173 + B3A SINE B2 83 143 -55 2 1035 233 28 0 77 chr4 59010950 59010989 -96619131 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1035 215 194 0 0 chr4 59010989 59011025 -96619095 + G-rich Low_complexity Low_complexity 1 36 0 2 1035 195 42 0 0 chr4 59011524 59011548 -96618572 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1035 388 228 87 0 chr4 59011600 59011692 -96618428 - RSINE1 SINE B4 -55 110 11 2 1035 3553 49 95 69 chr4 59012006 59012512 -96617608 - MURVY-LTR LTR ERV1 0 519 1 2 1035 489 34 0 0 chr4 59013128 59013187 -96616933 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 1035 310 314 29 0 chr4 59013189 59013294 -96616826 - PB1D10 SINE Alu -1 116 9 2 1035 1301 75 6 0 chr4 59013558 59013732 -96616388 + B2_Mm2 SINE B2 2 176 -19 2 1035 326 302 18 45 chr4 59013734 59013845 -96616275 + B1F SINE Alu 4 111 -38 2 1035 198 0 0 0 chr4 59013848 59013870 -96616250 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1035 213 39 0 0 chr4 59013870 59013895 -96616225 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1035 1586 43 0 21 chr4 59013904 59014096 -96616024 - B2_Mm1t SINE B2 -5 188 1 3 1035 228 86 0 0 chr4 59014102 59014137 -96615983 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1035 880 142 13 39 chr4 59014137 59014291 -96615829 - B1_Mur4 SINE Alu 0 150 1 3 1035 793 175 390 28 chr4 59014342 59014442 -96615678 - ORR1C2 LTR MaLR 0 384 279 3 1035 360 0 0 0 chr4 59014442 59014482 -96615638 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1035 597 28 0 0 chr4 59014490 59014561 -96615559 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1035 793 175 390 28 chr4 59014561 59014733 -96615387 - ORR1C2 LTR MaLR -156 228 2 3 1035 973 299 75 9 chr4 59015042 59015376 -96614744 + MTEa LTR MaLR 15 370 -9 3 1035 255 283 63 45 chr4 59015452 59015563 -96614557 + MER20 DNA MER1_type 32 144 -75 3 1035 210 162 0 0 chr4 59016158 59016195 -96613925 + (CTG)n Simple_repeat Simple_repeat 1 37 0 4 1035 26 50 0 0 chr4 59016341 59016381 -96613739 + GC_rich Low_complexity Low_complexity 1 40 0 4 1035 255 31 0 0 chr4 59016872 59016904 -96613216 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1035 849 138 14 0 chr4 59018088 59018226 -96611894 + B1_Mur3 SINE Alu 2 141 -8 4 1035 207 108 27 0 chr4 59019027 59019064 -96611056 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 4 1035 207 228 105 0 chr4 59019516 59019573 -96610547 + L2a LINE L2 3355 3417 -9 4 1035 682 69 20 0 chr4 59020284 59020385 -96609735 + (TTTTC)n Simple_repeat Simple_repeat 3 105 0 4 1035 533 204 106 0 chr4 59020389 59020502 -96609618 - B1_Mur2 SINE Alu -13 136 12 4 1035 235 259 71 36 chr4 59020440 59020524 -96609596 - MT2B LTR ERVL -363 238 152 4 1035 463 221 56 32 chr4 59020543 59020669 -96609451 - ID_B1 SINE B4 -8 216 88 4 1035 797 102 0 25 chr4 59020716 59020837 -96609283 + B1_Mus1 SINE Alu 30 147 -1 5 1035 281 321 75 22 chr4 59020849 59020983 -96609137 - B1F SINE Alu -8 141 1 5 1035 228 305 0 0 chr4 59021351 59021410 -96608710 + MER2B DNA MER2_type 12 70 -266 5 1035 766 261 78 5 chr4 59021427 59021631 -96608489 + ID_B1 SINE B4 1 219 -5 5 1035 1111 113 157 10 chr4 59021866 59022063 -96608057 - URR1A DNA MER1_type 0 226 1 5 1035 238 298 46 37 chr4 59022728 59022836 -96607284 - PB1D7 SINE Alu -8 112 4 5 1035 278 311 22 0 chr4 59022952 59023042 -96607078 - ID_B1 SINE B4 -131 93 2 4 1035 207 0 0 0 chr4 59023552 59023575 -96606545 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1035 324 246 0 0 chr4 59023718 59023787 -96606333 - ID4_ SINE ID -3 80 12 5 1035 809 176 7 40 chr4 59024052 59024200 -96605920 - B1_Mur4 SINE Alu -5 145 3 5 1035 363 241 185 49 chr4 59024203 59024408 -96605712 - B4A SINE B4 -58 234 2 5 1035 315 313 37 22 chr4 59024530 59024664 -96605456 - LTR37A LTR ERV1 0 426 291 6 1035 680 216 7 45 chr4 59025029 59025184 -96604936 - B1_Mur2 SINE Alu 0 149 1 6 1035 417 20 0 0 chr4 59026107 59026157 -96603963 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1035 895 86 172 74 chr4 59028845 59029008 -96601112 - B2_Mm2 SINE B2 -14 181 3 6 1035 352 261 62 114 chr4 59029464 59029788 -96600332 + B4 SINE B4 8 275 -17 6 1035 821 265 182 25 chr4 59030969 59031287 -96598833 - ORR1D2 LTR MaLR -2 368 1 6 1035 485 228 7 42 chr4 59031724 59031866 -96598254 - B3 SINE B2 -6 210 74 6 1035 530 265 45 42 chr4 59031927 59032191 -96597929 - RLTR15 LTR ERVK -94 265 1 6 1035 272 295 0 0 chr4 59032193 59032271 -96597849 - B3A SINE B2 -119 79 2 6 1035 232 300 64 0 chr4 59032701 59032811 -96597309 - PB1D9 SINE Alu -3 117 1 6 1035 450 290 12 47 chr4 59034581 59034751 -96595369 + B4A SINE B4 129 292 0 6 1035 468 252 44 40 chr4 59035135 59035285 -96594835 + B1F SINE Alu 2 149 0 7 1035 657 0 0 0 chr4 59036288 59036361 -96593759 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 7 1035 219 186 0 0 chr4 59036707 59036750 -96593370 + T-rich Low_complexity Low_complexity 1 43 0 7 1035 1197 61 0 0 chr4 59036750 59036897 -96593223 - B1_Mus2 SINE Alu 0 147 1 7 1035 228 172 58 155 chr4 59036917 59037020 -96593100 + B4A SINE B4 1 93 -199 7 1035 369 241 12 0 chr4 59037040 59037123 -96592997 + B4 SINE B4 204 287 -5 7 1035 267 79 0 0 chr4 59037134 59037172 -96592948 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1035 537 77 0 0 chr4 59037401 59037479 -96592641 - B1_Mur4 SINE Alu 0 150 73 7 1035 539 277 145 59 chr4 59037627 59037965 -96592155 - MTE2a LTR MaLR -12 367 1 7 1035 7013 213 70 59 chr4 59038508 59041005 -96589115 + Lx6 LINE L1 4488 7434 -26 7 1035 3680 97 52 5 chr4 59041195 59041795 -96588325 + ORR1A2-int LTR MaLR 1336 1963 0 7 1035 2432 83 9 36 chr4 59041795 59042131 -96587989 + ORR1A2 LTR MaLR 1 327 0 7 1035 494 151 75 0 chr4 59042231 59042324 -96587796 + B1_Mur2 SINE Alu 43 142 -7 8 1035 1516 135 9 0 chr4 59042697 59042919 -96587201 + URR1B DNA MER1_type 1 224 -1 8 1035 263 242 73 29 chr4 59043067 59043135 -96586985 + MT2B LTR ERVL 187 257 -344 8 1035 454 141 26 0 chr4 59043081 59043159 -96586961 + B1_Mur4 SINE Alu 50 129 -21 8 1035 2460 101 173 0 chr4 59043162 59043567 -96586553 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1035 6738 42 11 17 chr4 59043569 59044401 -96585719 - IAPEz-int LTR ERVK -2 6479 5653 8 1035 2719 73 0 3 chr4 59044396 59044739 -96585381 - IAPEz-int LTR ERVK -4781 1700 1359 8 1035 3672 60 3 35 chr4 59044739 59045494 -96584626 - IAPEz-int LTR ERVK -5819 662 9 8 1035 2514 99 150 0 chr4 59045495 59045908 -96584212 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1035 232 247 65 93 chr4 59045944 59046051 -96584069 - PB1D10 SINE Alu -12 105 2 8 1035 327 283 16 27 chr4 59046305 59046443 -96583677 - LTR16A LTR ERVL 0 568 314 8 1035 297 101 0 60 chr4 59046571 59046655 -96583465 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 8 1035 1117 70 0 0 chr4 59046665 59046808 -96583312 - B1_Mus2 SINE Alu -4 143 1 8 1035 22 35 0 0 chr4 59047121 59047150 -96582970 + AT_rich Low_complexity Low_complexity 1 29 0 8 1035 1749 135 96 63 chr4 59047150 59047514 -96582606 - Lx3B LINE L1 0 6973 6598 9 1035 24 53 0 0 chr4 59048014 59048052 -96582068 + GC_rich Low_complexity Low_complexity 1 38 0 9 1035 994 195 53 10 chr4 59048794 59049001 -96581119 + B3 SINE B2 1 216 0 9 1035 1725 21 0 0 chr4 59050079 59050271 -96579849 - B2_Mm1a SINE B2 0 193 2 9 1035 315 0 0 0 chr4 59050329 59050364 -96579756 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1035 1174 61 0 26 chr4 59051133 59051285 -96578835 - B1_Mus1 SINE Alu 0 148 1 9 1035 781 220 164 0 chr4 59051351 59051528 -96578592 + B3 SINE B2 1 206 -10 9 1035 314 222 14 0 chr4 59051670 59051742 -96578378 - ID4_ SINE ID -10 73 1 9 1035 238 26 51 0 chr4 59052591 59052630 -96577490 + (GTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1035 654 189 102 0 chr4 59052630 59052757 -96577363 - B1_Mur4 SINE Alu -8 142 3 9 1035 247 327 151 17 chr4 59055481 59055839 -96574281 - L1M5 LINE L1 -460 5664 5259 1 1035 695 158 71 0 chr4 59055859 59055986 -96574134 + B1_Mur4 SINE Alu 6 141 -9 1 1035 248 0 31 0 chr4 59055986 59056018 -96574102 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 1 1035 603 269 5 49 chr4 59056169 59056372 -96573748 + B3A SINE B2 1 194 -4 1 1035 247 222 171 12 chr4 59056956 59057038 -96573082 + MIR3 SINE MIR 93 187 -21 1 1035 346 275 51 51 chr4 59057459 59057597 -96572523 + Kanga2_a DNA Tc2 709 846 -42 1 1035 268 183 56 87 chr4 59057787 59057913 -96572207 + L1MA4 LINE L1 5781 5902 -398 1 1035 301 283 56 19 chr4 59059052 59059160 -96570960 + L1M5 LINE L1 4112 4223 -1923 1 1035 441 0 0 0 chr4 59059252 59059301 -96570819 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1035 372 217 18 70 chr4 59059314 59059428 -96570692 - PB1D9 SINE Alu -12 108 1 1 1035 836 231 11 6 chr4 59059428 59059502 -96570618 - B4 SINE B4 -206 86 12 1 1035 755 129 0 8 chr4 59059639 59059756 -96570364 - B1_Mur4 SINE Alu -1 149 34 1 1035 471 206 247 19 chr4 59059927 59060085 -96570035 - B3A SINE B2 -2 196 3 1 1035 225 316 24 71 chr4 59060449 59060575 -96569545 + MER49 LTR ERV1 449 568 -355 1 1035 1283 116 32 0 chr4 59061313 59061502 -96568618 - B2_Mm2 SINE B2 0 195 1 1 1035 1137 128 117 2 chr4 59062332 59062539 -96567581 + ORR1B1 LTR MaLR 156 394 0 1 1035 602 226 210 13 chr4 59062539 59062659 -96567461 + Lx8 LINE L1 7188 7338 -135 1 1035 180 0 0 0 chr4 59062659 59062679 -96567441 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1035 602 226 210 13 chr4 59062679 59062791 -96567329 + Lx8 LINE L1 7339 7466 -7 1 1035 249 33 0 0 chr4 59062909 59062939 -96567181 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1035 410 0 20 0 chr4 59062939 59062988 -96567132 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1035 291 204 170 11 chr4 59062997 59063091 -96567029 + B3 SINE B2 4 112 -104 1 1035 1072 218 28 0 chr4 59063996 59064212 -96565908 - ID_B1 SINE B4 -1 223 2 1 1035 264 187 13 39 chr4 59064592 59064670 -96565450 + (TTTA)n Simple_repeat Simple_repeat 3 78 0 1 1035 210 270 0 0 chr4 59064907 59064944 -96565176 + PB1D9 SINE Alu 12 48 -72 1 1035 1021 160 53 109 chr4 59064946 59065100 -96565020 + RMER16 LTR ERVK 1 251 -282 1 1035 1361 81 0 21 chr4 59065100 59065290 -96564830 - B2_Mm2 SINE B2 -8 187 2 1 1035 1021 212 90 113 chr4 59065290 59065558 -96564562 + RMER16 LTR ERVK 252 533 0 1 1035 313 183 59 88 chr4 59065558 59065622 -96564498 + PB1D9 SINE Alu 60 120 0 1 1035 456 232 26 43 chr4 59066675 59066792 -96563328 - PB1D10 SINE Alu -2 115 1 1 1035 1901 205 17 27 chr4 59067568 59067979 -96562141 - RMER15 LTR ERVL -2 573 167 1 1035 1196 219 96 10 chr4 59067985 59068276 -96561844 + RMER15 LTR ERVL 260 575 0 1 1035 268 288 0 0 chr4 59068312 59068371 -96561749 + MER68 LTR ERVL 132 190 -373 1 1035 846 270 93 29 chr4 59068407 59068685 -96561435 + MER68 LTR ERVL 264 559 -4 1 1035 621 162 0 0 chr4 59069344 59069444 -96560676 + B1_Mur4 SINE Alu 7 105 -45 1 1035 1153 62 0 0 chr4 59069444 59069590 -96560530 + B1_Mus2 SINE Alu 2 147 0 1 1035 568 189 0 26 chr4 59069590 59069606 -96560514 + PB1D9 SINE Alu 106 119 -1 1 1035 327 120 0 0 chr4 59069616 59069666 -96560454 + B1_Mus2 SINE Alu 89 138 -9 1 1035 1075 51 0 0 chr4 59069712 59069849 -96560271 + B2_Mm2 SINE B2 2 138 -57 1 1035 180 0 0 0 chr4 59069849 59069869 -96560251 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1035 396 0 0 0 chr4 59070393 59070437 -96559683 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1035 929 88 0 7 chr4 59070507 59070645 -96559475 + (TTC)n Simple_repeat Simple_repeat 2 138 0 1 1035 599 167 125 0 chr4 59070645 59070765 -96559355 - B1_Mur1 SINE Alu -9 140 6 1 1035 797 297 114 25 chr4 59070770 59071015 -96559105 - B4 SINE B4 -25 267 1 1 1035 1364 65 10 51 chr4 59071353 59071549 -96558571 + B2_Mm2 SINE B2 2 189 -6 1 1035 792 152 106 0 chr4 59071563 59071695 -96558425 + B1_Mus2 SINE Alu 1 146 -1 1 1035 557 167 110 7 chr4 59073401 59073546 -96556574 - Lx4B LINE L1 -17 7041 6882 1 1035 21 0 0 0 chr4 59073575 59073596 -96556524 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 603 235 44 107 chr4 59074099 59074136 -96555984 - B3A SINE B2 -2 196 166 1 1035 456 67 0 0 chr4 59074136 59074196 -96555924 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1035 603 235 44 107 chr4 59074196 59074363 -96555757 - B3A SINE B2 -33 165 5 1 1035 21 0 0 0 chr4 59074612 59074633 -96555487 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 811 140 29 0 chr4 59075775 59075911 -96554209 - B1_Mur2 SINE Alu 0 149 10 1 1035 22 0 0 0 chr4 59076133 59076155 -96553965 + GC_rich Low_complexity Low_complexity 1 22 0 1 1035 988 171 6 17 chr4 59076301 59076479 -96553641 + B2_Mm2 SINE B2 1 176 -19 1 1035 322 151 0 27 chr4 59076720 59076795 -96553325 + CT-rich Low_complexity Low_complexity 2 74 0 1 1035 206 0 0 160 chr4 59077093 59077199 -96552921 + (CACAG)n Simple_repeat Simple_repeat 2 90 0 1 1035 1410 68 16 16 chr4 59077571 59077764 -96552356 + B2_Mm2 SINE B2 2 194 -1 1 1035 324 227 40 0 chr4 59078150 59078225 -96551895 - ID4 SINE ID -2 81 4 1 1035 230 216 303 39 chr4 59078311 59078438 -96551682 + PB1D10 SINE Alu 2 139 -10 1 1035 850 133 0 65 chr4 59079504 59079657 -96550463 - B1_Mur2 SINE Alu -6 143 1 1 1035 684 224 201 0 chr4 59079685 59079864 -96550256 + B3 SINE B2 2 216 0 1 1035 641 181 8 0 chr4 59080017 59080150 -96549970 + CT-rich Low_complexity Low_complexity 1 134 0 1 1035 630 202 43 26 chr4 59080150 59080267 -96549853 - B1_Mur1 SINE Alu -6 143 25 1 1035 252 337 129 0 chr4 59080659 59080760 -96549360 - PB1 SINE Alu -12 115 2 1 1035 708 161 57 0 chr4 59081200 59081324 -96548796 + B1_Mus1 SINE Alu 2 132 -16 1 1035 225 0 0 0 chr4 59081361 59081386 -96548734 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1035 435 193 11 0 chr4 59081447 59081535 -96548585 - B3A SINE B2 -109 89 1 1 1035 222 357 0 91 chr4 59081820 59081897 -96548223 + ID2 SINE ID 9 78 -5 1 1035 284 233 179 8 chr4 59082274 59082408 -96547712 - MIRb SINE MIR -17 251 95 1 1035 657 241 44 0 chr4 59082715 59082852 -96547268 - RSINE1 SINE B4 -17 148 6 1 1035 483 18 0 0 chr4 59082855 59082911 -96547209 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 1 1035 260 143 61 0 chr4 59082919 59082968 -96547152 - PB1D9 SINE Alu -2 118 67 1 1035 435 294 51 46 chr4 59083017 59083213 -96546907 - B3A SINE B2 0 198 2 1 1035 591 313 72 34 chr4 59083297 59083714 -96546406 + L1MD2 LINE L1 29 461 -6086 1 1035 1259 20 0 7 chr4 59083885 59084033 -96546087 - B1_Mm SINE Alu 0 147 1 1 1035 366 327 72 29 chr4 59084038 59084246 -96545874 - L1MEc LINE L1 -5548 852 636 1 1035 708 110 83 0 chr4 59084949 59085058 -96545062 + B1_Mus1 SINE Alu 29 146 -2 1 1035 349 252 79 0 chr4 59085948 59086050 -96544070 + PB1D10 SINE Alu 1 115 -5 1 1035 378 311 178 13 chr4 59086158 59086383 -96543737 - LTR79 LTR ERVL 0 527 266 1 1035 234 0 0 0 chr4 59086817 59086843 -96543277 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1035 342 0 0 0 chr4 59086843 59086880 -96543240 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1035 220 211 0 26 chr4 59086880 59086958 -96543162 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1035 998 226 116 26 chr4 59086963 59087231 -96542889 - B4 SINE B4 0 292 1 1 1035 1143 62 7 14 chr4 59087318 59087465 -96542655 + B1_Mus1 SINE Alu 2 147 -1 1 1035 638 187 65 0 chr4 59087820 59087943 -96542177 + B1_Mus1 SINE Alu 10 140 -8 1 1035 473 322 58 55 chr4 59088149 59088319 -96541801 + Lx8 LINE L1 7176 7347 -126 1 1035 980 219 77 0 chr4 59088319 59088515 -96541605 + B3 SINE B2 1 211 -5 1 1035 473 322 58 55 chr4 59088515 59088636 -96541484 + Lx8 LINE L1 7348 7468 -5 1 1035 891 112 0 0 chr4 59089603 59089737 -96540383 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 1 1035 660 156 0 53 chr4 59089737 59089816 -96540304 + polypyrimidine Low_complexity Low_complexity 104 180 0 1 1035 683 199 56 7 chr4 59089816 59089958 -96540162 - B1_Mur4 SINE Alu 0 150 2 1 1035 660 156 0 53 chr4 59089958 59090004 -96540116 + polypyrimidine Low_complexity Low_complexity 64 103 0 1 1035 831 162 22 0 chr4 59090004 59090140 -96539980 - B1_Mur4 SINE Alu -11 139 1 1 1035 660 156 0 53 chr4 59090140 59090203 -96539917 + polypyrimidine Low_complexity Low_complexity 1 63 0 1 1035 213 319 0 68 chr4 59090503 59090577 -96539543 + ID4 SINE ID 2 70 -13 1 1035 387 0 0 0 chr4 59090581 59090624 -96539496 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1035 940 141 220 0 chr4 59091132 59091309 -96538811 - B3 SINE B2 0 216 1 1 1035 34 24 0 0 chr4 59091424 59091465 -96538655 + AT_rich Low_complexity Low_complexity 1 41 0 1 1035 204 40 0 0 chr4 59091502 59091527 -96538593 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1035 266 274 79 9 chr4 59091528 59091642 -96538478 + L1MB8 LINE L1 5840 5961 -217 1 1035 658 302 118 52 chr4 59091816 59092493 -96537627 + L1ME2 LINE L1 5383 6119 -45 1 1035 802 278 19 5 chr4 59092890 59093100 -96537020 - ID_B1 SINE B4 -10 214 2 1 1035 300 375 47 33 chr4 59093117 59093332 -96536788 - Charlie8 DNA MER1_type -2046 382 165 1 1035 213 39 0 0 chr4 59093632 59093658 -96536462 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1035 921 140 0 0 chr4 59093658 59093793 -96536327 - B1_Mur3 SINE Alu -9 140 6 1 1035 1138 212 123 55 chr4 59094063 59094533 -96535587 - Lx9 LINE L1 -170 7474 6973 1 1035 544 264 155 5 chr4 59095572 59095766 -96534354 - ID_B1 SINE B4 0 224 2 2 1035 24 32 0 0 chr4 59096094 59096125 -96533995 + AT_rich Low_complexity Low_complexity 1 31 0 2 1035 336 229 181 0 chr4 59096387 59096470 -96533650 + ID_B1 SINE B4 127 224 0 2 1035 843 164 0 29 chr4 59096534 59096672 -96533448 - B1_Mur3 SINE Alu -7 142 9 2 1035 418 310 23 99 chr4 59096672 59096698 -96533422 - B4 SINE B4 -65 195 69 2 1035 216 261 159 0 chr4 59097285 59097354 -96532766 - MIR SINE MIR -80 182 103 2 1035 394 291 30 30 chr4 59097401 59097532 -96532588 + MLT1B LTR MaLR 1 131 -259 2 1035 401 211 105 0 chr4 59097554 59097649 -96532471 + MLT1B LTR MaLR 265 369 -21 2 1035 557 230 275 30 chr4 59098519 59098752 -96531368 + B4 SINE B4 1 290 -2 2 1035 1681 21 0 0 chr4 59099199 59099389 -96530731 - B2_Mm1t SINE B2 -2 191 2 2 1035 314 225 14 0 chr4 59099420 59099491 -96530629 - B4A SINE B4 -220 72 1 2 1035 668 280 44 18 chr4 59100141 59100414 -96529706 - B4A SINE B4 -10 282 3 2 1035 1330 77 11 11 chr4 59100508 59100692 -96529428 - B2_Mm1t SINE B2 -8 185 2 2 1035 304 248 126 17 chr4 59100963 59101082 -96529038 + L1MEb LINE L1 297 428 -5642 2 1035 689 254 63 36 chr4 59101269 59101522 -96528598 + L1M3 LINE L1 4042 4306 -1834 2 1035 1265 104 16 5 chr4 59101522 59101706 -96528414 + B2_Mm2 SINE B2 1 186 -9 2 1035 689 254 63 36 chr4 59101706 59101754 -96528366 + L1M3 LINE L1 4307 4351 -1789 2 1035 498 250 73 97 chr4 59101770 59102058 -96528062 + RMER10A LTR ERVL 17 297 -145 2 1035 204 216 0 0 chr4 59102060 59102097 -96528023 + CT-rich Low_complexity Low_complexity 2 38 0 2 1035 460 170 62 21 chr4 59102148 59102244 -96527876 + RMER10A LTR ERVL 318 417 -25 2 1035 258 235 162 0 chr4 59102520 59102656 -96527464 + L1M4 LINE L1 5351 5508 -666 2 1035 395 279 18 67 chr4 59102800 59103023 -96527097 + L1M3 LINE L1 4806 5017 -1126 2 1035 2754 39 39 6 chr4 59103893 59104251 -96525869 + L1_Mus3 LINE L1 6253 6622 -16 2 1035 689 236 68 26 chr4 59104446 59104712 -96525408 + L1MB7 LINE L1 5675 5951 -233 2 1035 255 308 31 0 chr4 59104724 59104789 -96525331 + ID4_ SINE ID 8 74 -9 2 1035 579 28 0 0 chr4 59104774 59104859 -96525261 + B1_Mur4 SINE Alu 62 149 -1 2 1035 486 0 0 0 chr4 59105003 59105057 -96525063 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 2 1035 550 202 144 23 chr4 59105057 59105178 -96524942 - B1_Mur3 SINE Alu -10 139 3 2 1035 1973 121 3 3 chr4 59105633 59105940 -96524180 + Lx LINE L1 6347 6653 -1 2 1035 203 81 54 0 chr4 59105943 59105980 -96524140 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 2 1035 27 29 0 0 chr4 59106015 59106049 -96524071 + AT_rich Low_complexity Low_complexity 1 34 0 2 1035 6410 44 2 0 chr4 59108231 59109127 -96520993 - L1Md_F3 LINE L1 -639 5945 5049 2 1035 734 26 16 57 chr4 59109127 59109250 -96520870 + L1Md_F3 LINE L1 6465 6582 -2 2 1035 631 206 57 29 chr4 59110233 59110373 -96519747 + B1_Mur1 SINE Alu 5 148 -1 2 1035 1278 118 77 9 chr4 59110825 59111047 -96519073 + ORR1A4 LTR MaLR 93 329 0 2 1035 429 20 0 0 chr4 59111423 59111473 -96518647 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1035 324 0 0 0 chr4 59111482 59111518 -96518602 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1035 525 118 0 0 chr4 59111518 59111594 -96518526 - B1_Mus2 SINE Alu -13 134 59 2 129 8659 135 129 44 chr4 59113178 59114532 -96515588 + Lx7 LINE L1 192 1691 -4189 2 1036 1166 50 0 7 chr4 59114532 59114674 -96515446 + B1_Mm SINE Alu 1 141 -6 2 1036 8659 134 50 103 chr4 59114674 59115382 -96514738 + Lx7 LINE L1 1692 2405 -3475 2 1036 3017 120 50 33 chr4 59115382 59115898 -96514222 + RLTR11A LTR ERVK 4 528 0 2 1036 8659 134 50 103 chr4 59115898 59116284 -96513836 + Lx7 LINE L1 2406 2809 -3071 2 1036 932 140 7 20 chr4 59116284 59116430 -96513690 + B1_Mur4 SINE Alu 7 150 0 2 1036 8659 134 50 103 chr4 59116430 59116913 -96513207 + Lx7 LINE L1 2810 3317 -2563 2 1036 9283 180 37 44 chr4 59116922 59119252 -96510868 + Lx7 LINE L1 5389 7696 0 2 1036 268 363 129 18 chr4 59119744 59120222 -96509898 - L2a LINE L2 -24 3402 2803 2 1036 602 261 58 25 chr4 59120348 59120588 -96509532 + L1MB7 LINE L1 5039 5286 -860 2 1036 782 251 149 6 chr4 59120818 59121154 -96508966 + L1MB7 LINE L1 5454 5837 -347 2 1036 2632 111 10 10 chr4 59121228 59121627 -96508493 + Lx4A LINE L1 6658 7056 -2 2 1036 25 31 0 0 chr4 59121627 59121659 -96508461 + AT_rich Low_complexity Low_complexity 1 32 0 2 1036 21 0 0 0 chr4 59122026 59122047 -96508073 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 769 106 16 8 chr4 59122183 59122307 -96507813 + BC1_Mm scRNA scRNA 1 125 -27 2 1036 457 255 20 20 chr4 59123256 59123356 -96506764 - RSINE1 SINE B4 -62 103 4 2 1036 578 286 181 29 chr4 59123473 59123783 -96506337 - MLT1A0 LTR MaLR -4 361 5 2 1036 1281 102 21 0 chr4 59124201 59124388 -96505732 + B2_Mm2 SINE B2 1 191 -4 2 1036 1139 68 0 20 chr4 59124525 59124674 -96505446 - B1_Mus2 SINE Alu 0 147 2 2 1036 1157 68 0 0 chr4 59124696 59124843 -96505277 - B1_Mus2 SINE Alu 0 147 1 2 1036 291 215 0 0 chr4 59125181 59125246 -96504874 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 2 1036 875 148 35 0 chr4 59125257 59125399 -96504721 - B1_Mus1 SINE Alu -1 147 1 2 1036 196 232 112 112 chr4 59125614 59125721 -96504399 + MIRc SINE MIR 101 207 -61 2 1036 262 260 0 0 chr4 59125876 59125926 -96504194 - B1F1 SINE Alu -94 55 6 2 1036 28 0 0 0 chr4 59126022 59126050 -96504070 + AT_rich Low_complexity Low_complexity 1 28 0 2 1036 594 281 6 18 chr4 59126098 59126261 -96503859 + RSINE1 SINE B4 3 163 -2 2 1036 195 186 0 0 chr4 59126282 59126325 -96503795 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1036 1300 108 0 16 chr4 59126459 59126648 -96503472 + B2_Mm2 SINE B2 2 187 -8 2 1036 876 262 24 5 chr4 59127243 59127454 -96502666 + B3 SINE B2 2 216 0 2 1036 293 312 39 0 chr4 59127813 59127890 -96502230 + B1_Mur3 SINE Alu 1 80 -69 2 1036 289 267 40 0 chr4 59127920 59127995 -96502125 + ID4_ SINE ID 4 81 -2 2 1036 27 0 0 0 chr4 59128059 59128086 -96502034 + AT_rich Low_complexity Low_complexity 1 27 0 2 1036 862 127 15 7 chr4 59128187 59128322 -96501798 + B1_Mur4 SINE Alu 1 136 -14 2 1036 273 29 0 0 chr4 59128326 59128360 -96501760 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1036 510 17 0 0 chr4 59128469 59128528 -96501592 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1036 180 0 0 0 chr4 59128528 59128547 -96501573 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1036 303 294 0 96 chr4 59128550 59128644 -96501476 - RSINE1 SINE B4 -49 116 32 2 1036 1090 68 0 92 chr4 59128806 59128869 -96501251 - B2_Mm2 SINE B2 -46 149 100 2 1036 1253 97 32 0 chr4 59128869 59129032 -96501088 + B2_Mm1t SINE B2 1 164 -29 2 1036 261 0 0 0 chr4 59129032 59129061 -96501059 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1036 1253 97 32 0 chr4 59129061 59129083 -96501037 + B2_Mm1t SINE B2 165 191 -2 2 1036 1090 68 0 92 chr4 59129083 59129182 -96500938 - B2_Mm2 SINE B2 -96 99 2 2 1036 549 198 265 0 chr4 59129378 59129540 -96500580 - B3 SINE B2 -11 205 1 2 1036 418 170 176 20 chr4 59129985 59130087 -96500033 - PB1D9 SINE Alu -1 119 2 2 1036 32 0 0 0 chr4 59131612 59131644 -96498476 + AT_rich Low_complexity Low_complexity 1 32 0 2 1036 709 228 21 0 chr4 59131769 59131914 -96498206 + RSINE1 SINE B4 1 148 -17 2 1036 994 132 0 0 chr4 59132139 59132283 -96497837 + B1_Mur4 SINE Alu 6 149 -1 2 1036 1121 72 121 29 chr4 59132497 59132670 -96497450 - B2_Mm2 SINE B2 -6 189 1 2 1036 1153 43 0 0 chr4 59132804 59132942 -96497178 + B1_Mus1 SINE Alu 2 139 -9 2 1036 207 0 0 0 chr4 59132942 59132965 -96497155 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1036 402 302 47 51 chr4 59133546 59133780 -96496340 - L1ME3B LINE L1 -14 6226 5994 2 1036 243 350 45 89 chr4 59133962 59134141 -96495979 + ORR1E LTR MaLR 7 177 -182 2 1036 255 343 0 0 chr4 59134273 59134343 -96495777 + C-rich Low_complexity Low_complexity 3 72 0 2 1036 355 234 16 0 chr4 59134359 59134423 -96495697 - PB1D10 SINE Alu -9 108 44 2 1036 229 245 19 0 chr4 59134377 59134430 -96495690 - 4.5SRNA scRNA scRNA -6 88 35 2 1036 298 306 60 20 chr4 59134667 59134767 -96495353 - MLT1J LTR MaLR -406 106 3 2 1036 284 309 82 0 chr4 59134874 59134971 -96495149 - MIR SINE MIR -143 119 15 2 1036 806 93 16 48 chr4 59135210 59135334 -96494786 + PB1D9 SINE Alu 1 120 0 2 1036 306 0 0 0 chr4 59135374 59135408 -96494712 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1036 361 245 71 10 chr4 59135411 59135510 -96494610 - B3A SINE B2 -27 171 67 2 1036 189 163 0 0 chr4 59135747 59135796 -96494324 + T-rich Low_complexity Low_complexity 1 49 0 2 1036 990 94 162 6 chr4 59136560 59136720 -96493400 - B2_Mm2 SINE B2 -9 186 2 2 1036 234 183 32 48 chr4 59136733 59136796 -96493324 + B1_Mur2 SINE Alu 86 147 -2 2 1036 192 77 0 0 chr4 59136802 59136828 -96493292 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1036 1232 79 16 38 chr4 59136885 59137069 -96493051 - B2_Mm2 SINE B2 -14 181 2 2 1036 190 245 37 19 chr4 59137320 59137374 -96492746 + MIRm SINE MIR 200 254 -22 2 1036 520 256 65 13 chr4 59137386 59137540 -96492580 + RSINE1 SINE B4 3 164 -1 2 1036 191 36 36 0 chr4 59137542 59137570 -96492550 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1036 180 293 0 0 chr4 59137643 59137684 -96492436 + MIRc SINE MIR 82 122 -146 2 1036 1217 114 10 25 chr4 59138170 59138368 -96491752 + B2_Mm2 SINE B2 1 195 0 2 1036 501 202 0 31 chr4 59138441 59138538 -96491582 + PB1D10 SINE Alu 22 115 -2 2 1036 941 215 4 61 chr4 59138538 59138766 -96491354 + B3 SINE B2 2 216 0 2 1036 631 237 140 11 chr4 59138833 59139012 -96491108 - B3 SINE B2 -12 204 3 2 1036 553 305 0 0 chr4 59139340 59139481 -96490639 - B1F SINE Alu -8 141 1 2 1036 1158 74 0 0 chr4 59139540 59139688 -96490432 + B1_Mus1 SINE Alu 1 148 0 3 1036 33 25 0 0 chr4 59139689 59139729 -96490391 + AT_rich Low_complexity Low_complexity 1 40 0 3 1036 418 299 78 34 chr4 59140021 59140225 -96489895 + MER20 DNA MER1_type 3 215 -4 3 1036 261 0 0 0 chr4 59140258 59140287 -96489833 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1036 291 365 17 34 chr4 59141273 59141392 -96488728 - MIRb SINE MIR -129 139 23 3 1036 931 206 47 21 chr4 59141904 59142097 -96488023 + B3 SINE B2 4 201 -15 3 1036 282 308 158 30 chr4 59142134 59142298 -96487822 - MIRb SINE MIR -78 190 6 3 1036 318 278 86 17 chr4 59143112 59143229 -96486891 - L1MEf LINE L1 -1405 4741 4617 3 1036 661 279 123 0 chr4 59143290 59143631 -96486489 + L1MA5 LINE L1 5900 6282 -18 3 1036 200 35 35 0 chr4 59143634 59143663 -96486457 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1036 6322 63 44 68 chr4 59143663 59144275 -96485845 - Lx3_Mus LINE L1 -9 7000 6405 3 1036 1221 54 0 0 chr4 59144275 59144422 -96485698 - B1_Mm SINE Alu 0 147 1 3 1036 6322 63 44 68 chr4 59144422 59144779 -96485341 - Lx3_Mus LINE L1 -605 6404 6054 3 1036 607 130 11 11 chr4 59144789 59144882 -96485238 + 4.5SRNA scRNA scRNA 1 93 -1 3 1036 287 227 34 0 chr4 59144890 59144978 -96485142 - L1MEf LINE L1 -1538 4608 4518 3 1036 239 260 142 0 chr4 59144996 59145123 -96484997 - L1MEf LINE L1 -3782 2364 2220 3 1036 559 311 152 5 chr4 59145185 59145395 -96484725 - B4A SINE B4 -25 267 27 3 1036 1217 56 43 43 chr4 59145548 59145735 -96484385 + B2_Mm2 SINE B2 1 187 -8 3 1036 301 291 11 16 chr4 59146041 59146223 -96483897 - L1MEf LINE L1 -4030 2212 2032 3 1036 275 0 0 28 chr4 59146230 59146266 -96483854 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1036 524 112 27 27 chr4 59146310 59146457 -96483663 + (TTTA)n Simple_repeat Simple_repeat 2 148 0 3 1036 311 0 0 25 chr4 59146504 59146544 -96483576 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1036 347 0 0 23 chr4 59146591 59146635 -96483485 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1036 22 35 0 0 chr4 59146670 59146699 -96483421 + AT_rich Low_complexity Low_complexity 1 29 0 3 1036 279 237 98 40 chr4 59146699 59146781 -96483339 - L1MEf LINE L1 -4133 2109 2026 3 1036 306 0 0 0 chr4 59146781 59146815 -96483305 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1036 279 237 98 40 chr4 59146815 59146956 -96483164 - L1MEf LINE L1 -4217 2025 1873 3 1036 22 35 0 0 chr4 59147004 59147033 -96483087 + AT_rich Low_complexity Low_complexity 1 29 0 3 1036 333 266 92 14 chr4 59147049 59147190 -96482930 - L1MEf LINE L1 -4424 1818 1667 3 1036 486 276 0 0 chr4 59147216 59147321 -96482799 - ID_B1 SINE B4 -1 223 119 3 1036 252 291 102 42 chr4 59147325 59147590 -96482530 - L1MEf LINE L1 -4551 1691 1411 3 1036 442 270 179 19 chr4 59147781 59147943 -96482177 + MER58A DNA MER1_type 19 206 -18 3 1036 626 278 56 96 chr4 59148079 59148381 -96481739 + L1M4b LINE L1 107 396 -6938 3 1036 358 284 111 94 chr4 59148439 59148746 -96481374 + L1M4b LINE L1 485 796 -6538 3 1036 480 271 28 0 chr4 59148811 59148955 -96481165 + B1_Mur2 SINE Alu 2 149 0 3 1036 835 167 29 0 chr4 59149033 59149171 -96480949 - B1_Mur3 SINE Alu -7 142 1 3 1036 952 125 14 0 chr4 59149461 59149605 -96480515 + B1_Mus1 SINE Alu 3 148 0 3 1036 539 244 136 78 chr4 59149689 59150049 -96480071 + L1M4b LINE L1 3161 3541 -3459 3 1036 649 282 81 60 chr4 59150053 59150400 -96479720 + ORR1E LTR MaLR 3 356 -3 3 1036 538 218 30 0 chr4 59150567 59150668 -96479452 - PB1D7 SINE Alu -7 113 10 3 1036 369 308 9 18 chr4 59150583 59150692 -96479428 - ID_B1 SINE B4 -49 175 68 3 1036 787 83 9 0 chr4 59151174 59151283 -96478837 + B2_Mm1t SINE B2 1 110 -83 3 1036 252 86 0 0 chr4 59151283 59151318 -96478802 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1036 21 0 0 0 chr4 59151318 59151339 -96478781 + AT_rich Low_complexity Low_complexity 1 21 0 3 1036 4362 14 2 12 chr4 59151687 59152185 -96477935 - MT2_Mm LTR ERVL 0 493 1 3 1036 393 117 0 0 chr4 59152282 59152342 -96477778 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 3 1036 1019 59 0 26 chr4 59152342 59152498 -96477622 + (GGAAA)n Simple_repeat Simple_repeat 4 155 0 3 1036 1107 75 7 0 chr4 59153121 59153267 -96476853 + B1_Mus1 SINE Alu 2 148 0 3 1036 183 80 0 0 chr4 59153308 59153333 -96476787 + (GAA)n Simple_repeat Simple_repeat 2 26 0 3 1036 636 245 7 14 chr4 59153341 59153482 -96476638 + B1_Mur2 SINE Alu 3 142 -7 3 1036 202 200 0 24 chr4 59153482 59153523 -96476597 + G-rich Low_complexity Low_complexity 5 44 0 3 1036 350 256 156 0 chr4 59153539 59153629 -96476491 + RSINE1 SINE B4 4 107 -58 3 1036 709 194 85 0 chr4 59153642 59153771 -96476349 + B1_Mus2 SINE Alu 8 147 0 3 1036 488 122 12 0 chr4 59153780 59153862 -96476258 + (GGA)n Simple_repeat Simple_repeat 1 83 0 3 1036 778 135 83 0 chr4 59153998 59154131 -96475989 + B1_Mur4 SINE Alu 6 149 -1 3 1036 270 0 0 0 chr4 59154760 59154790 -96475330 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1036 5730 70 13 7 chr4 59154830 59155591 -96474529 + L1Md_F2 LINE L1 5814 6579 -3 3 1036 1232 35 7 0 chr4 59155617 59155762 -96474358 + B1_Mm SINE Alu 1 146 -1 3 1036 1144 96 18 0 chr4 59157097 59157263 -96472857 - B2_Mm2 SINE B2 0 195 27 3 1036 195 69 0 0 chr4 59157263 59157292 -96472828 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1036 1219 21 14 0 chr4 59157292 59157437 -96472683 - B1_Mm SINE Alu 0 147 1 3 1036 284 77 0 0 chr4 59157438 59157477 -96472643 - B3A SINE B2 -158 40 2 3 1036 183 80 0 0 chr4 59157972 59157997 -96472123 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 1036 441 50 0 0 chr4 59158247 59158307 -96471813 + (TTGG)n Simple_repeat Simple_repeat 2 61 0 3 1036 593 228 18 1 chr4 59158308 59158439 -96471681 - B1_Mur4 SINE Alu -8 142 10 3 1036 322 313 51 51 chr4 59158439 59158483 -96471637 - ID_B1 SINE B4 -8 216 42 3 1036 387 255 37 5 chr4 59158953 59159083 -96471037 - B3 SINE B2 0 216 29 3 1036 5174 62 27 4 chr4 59159083 59159760 -96470360 - L1Md_F2 LINE L1 -12 6570 5879 3 1036 343 234 13 13 chr4 59159760 59159787 -96470333 - B3 SINE B2 -188 28 3 3 1036 1220 48 0 0 chr4 59160370 59160517 -96469603 + B1_Mus2 SINE Alu 1 147 0 3 1036 929 179 174 0 chr4 59160894 59161078 -96469042 - B3 SINE B2 0 216 1 3 1036 1672 31 0 0 chr4 59161213 59161405 -96468715 + B2_Mm1a SINE B2 2 193 0 3 1036 1176 28 28 0 chr4 59161429 59161572 -96468548 + B1_Mm SINE Alu 1 147 0 3 1036 538 248 13 80 chr4 59162686 59162910 -96467210 + L1MB4 LINE L1 5839 6047 -133 3 1036 21 0 0 0 chr4 59163074 59163095 -96467025 + AT_rich Low_complexity Low_complexity 1 21 0 3 1036 182 37 0 36 chr4 59163130 59163158 -96466962 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1036 637 248 7 0 chr4 59163160 59163297 -96466823 - B1_Mur2 SINE Alu -10 139 2 3 1036 31 26 0 0 chr4 59164673 59164711 -96465409 + AT_rich Low_complexity Low_complexity 1 38 0 3 1036 928 161 0 7 chr4 59165064 59165214 -96464906 - B1_Mur4 SINE Alu 0 150 2 3 1036 330 311 57 0 chr4 59165601 59165707 -96464413 + PB1D10 SINE Alu 6 117 0 3 1036 547 184 27 18 chr4 59165708 59165819 -96464301 + PB1D9 SINE Alu 9 120 0 3 1036 255 296 86 11 chr4 59165994 59166168 -96463952 + L1MB8 LINE L1 5919 6105 -73 3 1036 817 181 55 33 chr4 59166228 59166411 -96463709 + B2_Mm2 SINE B2 1 187 -8 3 1036 535 262 139 21 chr4 59166579 59166766 -96463354 + B4A SINE B4 2 210 -82 3 1036 258 164 65 16 chr4 59166957 59167019 -96463101 + RMER6A LTR ERVK 57 121 -635 3 1036 1056 139 47 0 chr4 59167769 59167941 -96462179 + B2_Mm2 SINE B2 2 181 -14 3 1036 398 88 14 0 chr4 59167992 59168057 -96462063 + B2_Mm2 SINE B2 46 116 -82 3 1036 387 0 0 0 chr4 59168073 59168116 -96462004 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1036 267 103 0 0 chr4 59168307 59168346 -96461774 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1036 1221 192 78 17 chr4 59168346 59168642 -96461478 - Lx7 LINE L1 -203 7493 7180 3 1036 3760 106 42 40 chr4 59168644 59169244 -96460876 + MT2B LTR ERVL 1 601 0 3 1036 916 157 9 58 chr4 59169403 59169708 -96460412 + RLTR20B2 LTR ERVK 22 458 -105 3 1036 1125 56 5 27 chr4 59169708 59169892 -96460228 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1036 728 203 5 114 chr4 59169892 59170001 -96460119 + RLTR20B2 LTR ERVK 459 549 -14 3 1036 225 128 0 0 chr4 59171258 59171305 -96458815 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1036 191 263 54 116 chr4 59171966 59172078 -96458042 + MIRb SINE MIR 126 230 -38 3 1036 228 305 250 11 chr4 59172557 59172733 -96457387 + MIR SINE MIR 2 219 -43 3 1036 285 289 12 12 chr4 59173371 59173455 -96456665 + GA-rich Low_complexity Low_complexity 1 84 0 3 1036 234 0 0 0 chr4 59177410 59177436 -96452684 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1036 324 350 49 0 chr4 59177436 59177579 -96452541 + L3 LINE CR1 3558 3707 -782 3 1036 264 200 171 24 chr4 59177721 59177803 -96452317 - B4 SINE B4 -197 95 2 3 1036 1055 114 72 0 chr4 59177873 59178040 -96452080 + B2_Mm1t SINE B2 1 179 -14 3 1036 215 95 167 0 chr4 59178074 59178116 -96452004 + B2_Mm2 SINE B2 47 95 -100 3 1036 22 0 0 0 chr4 59178132 59178154 -96451966 + AT_rich Low_complexity Low_complexity 1 22 0 3 1036 968 256 47 32 chr4 59178154 59178433 -96451687 + B4 SINE B4 9 291 -1 3 1036 1330 52 46 6 chr4 59178797 59178970 -96451150 + B2_Mm2 SINE B2 2 181 -14 3 1036 1144 64 0 0 chr4 59178988 59179128 -96450992 + B1_Mus2 SINE Alu 2 141 -6 3 1036 414 0 0 0 chr4 59179130 59179176 -96450944 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1036 660 132 0 0 chr4 59179204 59179310 -96450810 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 3 1036 5023 75 9 3 chr4 59179310 59179976 -96450144 - Lx3_Mus LINE L1 -12 6997 6328 3 1036 2014 91 98 0 chr4 59180002 59180298 -96449822 - ORR1A2 LTR MaLR 0 327 3 3 1036 7527 138 84 18 chr4 59180302 59181774 -96448346 - ORR1A2-int LTR MaLR -2 1961 394 3 1036 337 123 0 34 chr4 59181768 59181827 -96448293 - ORR1A2 LTR MaLR -270 57 1 3 1036 611 338 71 0 chr4 59182511 59182736 -96447384 - B4 SINE B4 -4 288 48 3 1036 215 61 30 0 chr4 59182763 59182796 -96447324 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 1036 315 0 0 0 chr4 59183557 59183592 -96446528 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1036 279 0 0 0 chr4 59183592 59183622 -96446498 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1036 1017 85 5 118 chr4 59184032 59184073 -96446047 - B2_Mm2 SINE B2 -14 181 154 4 1036 530 121 0 35 chr4 59184073 59184159 -96445961 + ID2 SINE ID 1 83 0 4 1036 1017 85 5 118 chr4 59184159 59184303 -96445817 - B2_Mm2 SINE B2 -42 153 17 4 1036 181 30 91 0 chr4 59185024 59185057 -96445063 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1036 541 169 15 92 chr4 59185092 59185222 -96444898 - PB1D9 SINE Alu 0 120 1 4 1036 317 240 173 72 chr4 59185100 59185239 -96444881 - B4 SINE B4 -71 221 69 4 1036 245 51 0 25 chr4 59185383 59185423 -96444697 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1036 458 120 0 26 chr4 59185830 59185907 -96444213 - MTC LTR MaLR -346 75 1 4 1036 593 86 217 9 chr4 59185969 59186075 -96444045 + B1_Mus2 SINE Alu 18 145 -2 4 1036 283 136 17 17 chr4 59186075 59186135 -96443985 + (CAA)n Simple_repeat Simple_repeat 1 60 0 4 1036 180 111 0 0 chr4 59186139 59186166 -96443954 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1036 353 211 0 40 chr4 59186170 59186244 -96443876 - ID_B1 SINE B4 -22 202 132 4 1036 647 210 49 7 chr4 59186746 59186890 -96443230 + B3A SINE B2 1 150 -48 4 1036 347 179 30 0 chr4 59186930 59186995 -96443125 - B1_Mur1 SINE Alu 0 149 83 4 1036 626 186 0 58 chr4 59186995 59187132 -96442988 + B3 SINE B2 2 130 -86 4 1036 26 30 0 0 chr4 59187166 59187199 -96442921 + AT_rich Low_complexity Low_complexity 1 33 0 4 1036 454 251 53 31 chr4 59187199 59187371 -96442749 + L1ME2 LINE L1 5879 6052 -112 4 1036 443 244 0 0 chr4 59188495 59188577 -96441543 - ID4 SINE ID 0 83 2 4 1036 506 167 78 0 chr4 59189368 59189470 -96440650 - B1_Mur2 SINE Alu -15 134 25 4 1036 214 280 80 115 chr4 59189474 59189587 -96440533 - B1_Mm SINE Alu -38 109 1 4 1036 478 310 44 6 chr4 59189587 59189661 -96440459 - B4A SINE B4 -203 89 10 4 1036 329 47 62 0 chr4 59189663 59189727 -96440393 + (CAA)n Simple_repeat Simple_repeat 1 68 0 4 1036 801 118 71 36 chr4 59190128 59190268 -96439852 + B1_Mus1 SINE Alu 2 146 -2 4 1036 3023 58 50 0 chr4 59190941 59191322 -96438798 - MTB LTR MaLR 0 400 1 4 1036 6253 92 81 79 chr4 59191322 59192418 -96437702 - MTB-int LTR MaLR 0 1098 1 4 1036 445 53 0 0 chr4 59192418 59192475 -96437645 - MTB LTR MaLR 0 400 344 4 1036 1561 176 69 8 chr4 59192479 59192800 -96437320 + MYSERV16_I-int LTR ERVK 1 310 -2016 4 1036 341 306 19 27 chr4 59192806 59192986 -96437134 + RLTR20A LTR ERVK 214 397 -180 4 1036 1708 86 8 10 chr4 59192986 59193269 -96436851 + RMER16 LTR ERVK 1 403 -130 4 1036 1141 83 0 0 chr4 59193269 59193413 -96436707 + B1_Mus2 SINE Alu 2 145 -2 4 1036 204 67 0 0 chr4 59193413 59193443 -96436677 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1036 273 282 51 0 chr4 59194500 59194578 -96435542 + ID4_ SINE ID 2 83 0 4 1036 477 0 0 0 chr4 59194733 59194786 -96435334 + (CAAG)n Simple_repeat Simple_repeat 2 54 0 4 1036 465 325 19 13 chr4 59194863 59195022 -96435098 + MER5A1 DNA MER1_type 1 160 -6 4 1036 1207 63 0 44 chr4 59195266 59195448 -96434672 - B2_Mm2 SINE B2 -20 175 2 4 1036 34 0 0 0 chr4 59195541 59195575 -96434545 + AT_rich Low_complexity Low_complexity 1 34 0 4 1036 333 0 0 0 chr4 59195654 59195691 -96434429 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 1036 1002 93 27 0 chr4 59195693 59195843 -96434277 - B2_Mm2 SINE B2 -40 155 2 4 1036 1050 99 14 0 chr4 59196156 59196297 -96433823 + B1_Mus1 SINE Alu 3 145 -3 4 1036 204 40 0 0 chr4 59196299 59196324 -96433796 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1036 678 157 86 36 chr4 59196463 59196602 -96433518 + B1_Mus1 SINE Alu 1 146 -2 4 1036 393 102 0 0 chr4 59196636 59196695 -96433425 + (TATG)n Simple_repeat Simple_repeat 4 62 0 4 1036 214 333 191 0 chr4 59196713 59196818 -96433302 - MIRm SINE MIR -125 151 27 4 1036 543 291 0 20 chr4 59196895 59197046 -96433074 + B1_Mur1 SINE Alu 2 149 0 4 1036 33 80 0 0 chr4 59197048 59197123 -96432997 + AT_rich Low_complexity Low_complexity 1 75 0 4 1036 42 0 0 0 chr4 59197173 59197215 -96432905 + AT_rich Low_complexity Low_complexity 1 42 0 4 1036 235 284 53 26 chr4 59197554 59197629 -96432491 + B1F SINE Alu 3 79 -70 4 1036 578 289 64 78 chr4 59197629 59197861 -96432259 + B4A SINE B4 1 232 -60 4 1036 2187 141 38 30 chr4 59197861 59198256 -96431864 - RMER10B LTR ERVL 0 398 1 4 1036 578 289 64 78 chr4 59198256 59198319 -96431801 + B4A SINE B4 233 292 0 4 1036 1092 19 39 0 chr4 59198332 59198487 -96431633 + (CA)n Simple_repeat Simple_repeat 2 162 0 4 1036 381 264 45 18 chr4 59199088 59199200 -96430920 - PB1D10 SINE Alu -2 115 1 4 1036 220 328 15 0 chr4 59199384 59199451 -96430669 - ID2 SINE ID -11 72 5 4 1036 642 251 66 10 chr4 59199839 59200036 -96430084 - L1MC1 LINE L1 -15 6318 6111 4 1036 264 223 83 21 chr4 59200085 59200181 -96429939 - L1MC1 LINE L1 -346 5987 5886 4 1036 565 201 61 86 chr4 59200219 59200382 -96429738 + B3 SINE B2 4 162 -54 4 1036 245 186 16 78 chr4 59200385 59200449 -96429671 - B3 SINE B2 -156 60 1 4 1036 1122 64 28 0 chr4 59201063 59201204 -96428916 - B1_Mus1 SINE Alu 0 148 4 4 1036 277 226 39 90 chr4 59201354 59201472 -96428648 - PB1 SINE Alu 0 149 21 4 1036 26 30 0 0 chr4 59201904 59201937 -96428183 + GC_rich Low_complexity Low_complexity 1 33 0 4 1036 31 58 0 0 chr4 59201987 59202039 -96428081 + GC_rich Low_complexity Low_complexity 1 52 0 4 1036 384 77 0 0 chr4 59202148 59202200 -96427920 + (CGG)n Simple_repeat Simple_repeat 1 52 0 4 1036 21 0 0 0 chr4 59202373 59202394 -96427726 + GC_rich Low_complexity Low_complexity 1 21 0 4 1036 27 29 0 0 chr4 59202414 59202448 -96427672 + GC_rich Low_complexity Low_complexity 1 34 0 4 1036 185 86 57 0 chr4 59202478 59202513 -96427607 + (CCGGG)n Simple_repeat Simple_repeat 4 40 0 4 1036 388 241 78 7 chr4 59203243 59203385 -96426735 - L2a LINE L2 -5 3421 3270 4 1036 215 0 67 0 chr4 59203557 59203587 -96426533 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1036 309 309 0 0 chr4 59204343 59204424 -96425696 - ID4 SINE ID -2 81 1 4 1036 1157 42 0 20 chr4 59204439 59204585 -96425535 - B1_Mm SINE Alu 0 147 5 4 1036 1091 61 13 57 chr4 59205190 59205347 -96424773 - B1_Mur4 SINE Alu 0 150 1 4 1036 707 229 21 7 chr4 59205400 59205541 -96424579 - B1_Mur2 SINE Alu -6 143 1 4 1036 24 0 0 0 chr4 59205607 59205631 -96424489 + AT_rich Low_complexity Low_complexity 1 24 0 4 1036 405 0 0 0 chr4 59205663 59205708 -96424412 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1036 524 195 0 103 chr4 59205721 59205847 -96424273 - RSINE1 SINE B4 -51 114 2 4 1036 283 237 0 13 chr4 59205901 59205978 -96424142 + B1_Mus2 SINE Alu 46 121 -26 4 1036 409 165 0 76 chr4 59205947 59206039 -96424081 + B1_Mur2 SINE Alu 65 149 0 4 1036 440 228 40 0 chr4 59206227 59206328 -96423792 + PB1D10 SINE Alu 13 117 0 4 1036 230 81 0 26 chr4 59206422 59206460 -96423660 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1036 334 238 62 0 chr4 59207673 59207753 -96422367 - B3 SINE B2 -2 214 130 4 1036 470 156 29 19 chr4 59207809 59207919 -96422201 - B1_Mur3 SINE Alu -25 124 14 4 1036 189 0 0 0 chr4 59210412 59210433 -96419687 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1036 1512 36 0 50 chr4 59210657 59210816 -96419304 + B2_Mm1a SINE B2 2 160 -33 4 1036 207 0 0 0 chr4 59210816 59210839 -96419281 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1036 1512 36 0 50 chr4 59210839 59210881 -96419239 + B2_Mm1a SINE B2 161 193 0 4 1036 889 184 0 0 chr4 59210908 59211055 -96419065 + B1_Mus1 SINE Alu 2 148 0 4 1036 286 239 70 0 chr4 59211621 59211692 -96418428 - ID4_ SINE ID -1 82 7 4 1036 1489 62 10 10 chr4 59211740 59211935 -96418185 - B2_Mm2 SINE B2 0 195 1 4 1036 195 42 0 0 chr4 59212138 59212162 -96417958 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1036 357 316 12 54 chr4 59213308 59213475 -96416645 - RSINE1 SINE B4 -3 162 3 4 1036 290 200 29 0 chr4 59214397 59214467 -96415653 - L1MEc LINE L1 -5558 842 771 4 1036 301 281 186 24 chr4 59214463 59214711 -96415409 - L1MEc LINE L1 -6077 323 36 4 1036 313 288 75 48 chr4 59214766 59214952 -96415168 + L1ME3A LINE L1 5710 5900 -273 4 1036 1056 71 42 14 chr4 59215956 59216099 -96414021 - B1_Mus2 SINE Alu 0 147 1 4 1036 812 279 93 21 chr4 59216378 59216711 -96413409 + L1MA4 LINE L1 5576 5932 -368 4 1036 426 20 0 0 chr4 59217289 59217340 -96412780 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1036 968 128 92 69 chr4 59217585 59217803 -96412317 - URR1B DNA MER1_type 0 225 3 4 1036 239 211 94 62 chr4 59218453 59218549 -96411571 - MER5C1 DNA MER1_type -85 178 80 4 1036 307 20 80 0 chr4 59219330 59219380 -96410740 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 4 1036 405 268 241 5 chr4 59219671 59219866 -96410254 - B4A SINE B4 -39 253 13 4 1036 210 37 0 0 chr4 59219867 59219894 -96410226 + (C)n Simple_repeat Simple_repeat 1 27 0 4 1036 210 37 0 0 chr4 59220023 59220050 -96410070 + (CCTG)n Simple_repeat Simple_repeat 3 29 0 4 1036 513 84 0 0 chr4 59220056 59220127 -96409993 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 4 1036 597 211 115 32 chr4 59220227 59220303 -96409817 + ID SINE ID 1 89 -135 4 1036 346 262 91 27 chr4 59220303 59220413 -96409707 + PB1D10 SINE Alu 1 117 0 4 1036 257 324 0 13 chr4 59221828 59221903 -96408217 + ID4_ SINE ID 3 76 -7 4 1036 468 368 33 6 chr4 59222827 59223010 -96407110 + B3A SINE B2 1 188 -10 4 1036 36 40 0 0 chr4 59223986 59224036 -96406084 + AT_rich Low_complexity Low_complexity 1 50 0 4 1036 195 69 0 0 chr4 59224492 59224521 -96405599 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1036 1204 43 0 0 chr4 59224528 59224669 -96405451 - B1_Mus2 SINE Alu -6 141 1 5 1036 2445 208 145 2 chr4 59225140 59225698 -96404422 - Lx7 LINE L1 -956 6740 6103 5 1036 294 172 147 35 chr4 59225889 59225982 -96404138 - L1MA8 LINE L1 -17 6274 6176 5 1036 242 29 29 0 chr4 59227259 59227294 -96402826 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1036 210 204 0 53 chr4 59227387 59227444 -96402676 + CT-rich Low_complexity Low_complexity 2 55 0 5 1036 445 312 33 60 chr4 59228027 59228242 -96401878 - B4A SINE B4 -2 290 82 5 1036 1242 54 0 0 chr4 59228257 59228405 -96401715 - B1_Mus1 SINE Alu 0 148 1 5 1036 498 246 8 16 chr4 59229026 59229150 -96400970 + B3A SINE B2 1 123 -75 5 1036 192 40 0 0 chr4 59229304 59229329 -96400791 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1036 1161 41 0 27 chr4 59229441 59229454 -96400666 - B1_Mus2 SINE Alu -2 145 135 5 1036 222 37 0 0 chr4 59229454 59229481 -96400639 + (TTC)n Simple_repeat Simple_repeat 1 27 0 5 1036 1161 41 0 27 chr4 59229481 59229616 -96400504 - B1_Mus2 SINE Alu -13 134 1 5 1036 968 216 54 5 chr4 59230417 59230622 -96399498 - B3 SINE B2 0 216 2 5 1036 1214 62 0 0 chr4 59230781 59230927 -96399193 - B1_Mus2 SINE Alu 0 147 2 5 1036 532 264 0 40 chr4 59231551 59231677 -96398443 + B1_Mus2 SINE Alu 2 122 -25 5 1036 328 342 7 39 chr4 59231677 59231698 -96398422 + ID_B1 SINE B4 111 224 0 5 1036 698 241 13 70 chr4 59231933 59232161 -96397959 + ID_B1 SINE B4 3 217 -7 5 1036 432 0 0 0 chr4 59232882 59232930 -96397190 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1036 243 170 0 0 chr4 59233554 59233601 -96396519 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1036 23 0 0 0 chr4 59233871 59233894 -96396226 + AT_rich Low_complexity Low_complexity 1 23 0 5 1036 281 72 72 0 chr4 59233931 59234000 -96396120 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 5 1036 696 129 15 53 chr4 59235791 59235922 -96394198 - B1_Mur4 SINE Alu 0 150 25 5 1036 294 247 100 11 chr4 59236869 59236959 -96393161 + PB1D10 SINE Alu 3 100 -17 5 1036 698 225 168 6 chr4 59237105 59237284 -96392836 + B3 SINE B2 2 209 -7 5 1036 342 272 0 134 chr4 59238234 59238353 -96391767 + PB1D10 SINE Alu 10 112 -5 5 1036 485 204 10 0 chr4 59238426 59238524 -96391596 - B1_Mur4 SINE Alu -15 135 37 5 1036 248 128 0 41 chr4 59238667 59238716 -96391404 - B3A SINE B2 -150 48 2 5 1036 777 163 0 0 chr4 59238914 59239037 -96391083 + B1_Mus2 SINE Alu 1 123 -24 5 1036 1063 148 32 41 chr4 59239044 59239262 -96390858 + URR1B DNA MER1_type 10 225 0 5 1036 183 240 0 0 chr4 59239287 59239330 -96390790 + A-rich Low_complexity Low_complexity 1 43 0 5 1036 636 123 143 23 chr4 59239330 59239463 -96390657 + B1_Mur3 SINE Alu 1 149 0 5 1036 183 240 0 0 chr4 59239463 59239494 -96390626 + A-rich Low_complexity Low_complexity 44 74 0 5 1036 2603 309 88 26 chr4 59239852 59240637 -96389483 - Lx8 LINE L1 -1 7472 6642 5 1036 1042 94 134 12 chr4 59240637 59240809 -96389311 + B2_Mm1t SINE B2 1 193 0 5 1036 2603 309 88 26 chr4 59240809 59241193 -96388927 - Lx8 LINE L1 -832 6641 6230 5 1036 29 0 0 0 chr4 59241212 59241241 -96388879 + AT_rich Low_complexity Low_complexity 1 29 0 5 1036 30 0 0 0 chr4 59241372 59241402 -96388718 + AT_rich Low_complexity Low_complexity 1 30 0 5 1036 375 60 0 0 chr4 59241405 59241455 -96388665 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1036 599 247 140 0 chr4 59241462 59241612 -96388508 - B3A SINE B2 -27 171 1 5 1036 387 155 9 19 chr4 59241692 59241797 -96388323 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1036 890 271 79 19 chr4 59241846 59242239 -96387881 - Lx8 LINE L1 -364 5927 5489 5 1036 454 209 46 28 chr4 59242241 59242349 -96387771 + PB1D9 SINE Alu 1 110 -10 5 1036 479 168 8 0 chr4 59242352 59242471 -96387649 + (CA)n Simple_repeat Simple_repeat 1 120 0 5 1036 282 298 16 39 chr4 59242471 59242600 -96387520 - L1_Mur1 LINE L1 -369 5517 5392 5 1036 397 250 16 24 chr4 59242713 59242836 -96387284 - ID_B1 SINE B4 -1 223 102 5 1036 287 151 0 0 chr4 59243150 59243203 -96386917 + PB1D10 SINE Alu 51 103 -14 5 1036 288 271 0 12 chr4 59243203 59243289 -96386831 + GA-rich Low_complexity Low_complexity 4 88 0 5 1036 1160 36 7 0 chr4 59243646 59243784 -96386336 + B1_Mus1 SINE Alu 1 139 -9 5 129 267 270 0 26 chr4 59244543 59244619 -96385501 + B4A SINE B4 8 81 -211 5 1037 425 19 19 0 chr4 59244654 59244708 -96385412 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1037 644 184 19 90 chr4 59244814 59244969 -96385151 + B1_Mur1 SINE Alu 2 145 -4 5 1037 417 153 0 0 chr4 59244969 59245041 -96385079 + (CTA)n Simple_repeat Simple_repeat 3 74 0 5 1037 459 52 0 0 chr4 59245041 59245099 -96385021 + (TAA)n Simple_repeat Simple_repeat 1 58 0 5 1037 235 240 0 0 chr4 59245100 59245150 -96384970 + B4A SINE B4 225 274 -18 5 1037 225 0 0 0 chr4 59245357 59245382 -96384738 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1037 325 279 0 0 chr4 59245384 59245452 -96384668 - ID4 SINE ID -11 72 5 5 1037 783 196 0 0 chr4 59245637 59245770 -96384350 + B1_Mur2 SINE Alu 5 137 -12 5 1037 270 0 0 0 chr4 59245773 59245803 -96384317 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1037 1230 41 0 0 chr4 59246190 59246336 -96383784 + B1_Mus2 SINE Alu 2 147 0 5 1037 249 33 0 0 chr4 59246503 59246533 -96383587 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 1037 1132 65 0 0 chr4 59246533 59246671 -96383449 - B1_Mus2 SINE Alu -9 138 1 5 1037 225 0 0 0 chr4 59247197 59247222 -96382898 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1037 265 158 48 95 chr4 59247925 59248009 -96382111 + MT2B LTR ERVL 160 239 -362 5 1037 374 224 27 45 chr4 59247934 59248046 -96382074 + PB1D10 SINE Alu 7 116 -1 5 1037 221 340 136 0 chr4 59248126 59248229 -96381891 + PB1D10 SINE Alu 1 117 0 5 1037 370 229 92 17 chr4 59248422 59248542 -96381578 + B4 SINE B4 76 204 -88 5 1037 691 94 125 8 chr4 59248439 59248567 -96381553 + B1_Mur3 SINE Alu 7 149 0 5 1037 433 304 105 24 chr4 59248931 59249227 -96380893 - MER33 DNA MER1_type 0 324 5 5 1037 225 0 0 0 chr4 59249374 59249399 -96380721 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1037 1144 58 0 0 chr4 59249716 59249854 -96380266 - B1_Mus1 SINE Alu -10 138 1 5 1037 635 250 58 0 chr4 59250573 59250729 -96379391 - RSINE1 SINE B4 0 165 1 5 1037 800 136 22 17 chr4 59250866 59251045 -96379075 + CT-rich Low_complexity Low_complexity 1 180 0 5 1037 479 256 8 15 chr4 59251055 59251186 -96378934 - RMER15 LTR ERVL -111 464 335 5 1037 638 153 0 39 chr4 59251217 59251330 -96378790 - RMER1B Other Other -4 1062 954 5 1037 204 40 0 0 chr4 59251330 59251355 -96378765 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 5 1037 638 153 0 39 chr4 59251355 59251370 -96378750 - RMER1B Other Other -113 953 939 5 1037 717 137 0 0 chr4 59251372 59251474 -96378646 + RMER1B Other Other 797 898 -168 5 1037 281 380 151 0 chr4 59251989 59252155 -96377965 + L1MC LINE L1 5476 5666 -2216 5 1037 249 57 0 0 chr4 59252171 59252206 -96377914 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1037 302 338 57 7 chr4 59253832 59253972 -96376148 + MIRb SINE MIR 88 234 -34 5 1037 989 215 5 10 chr4 59254052 59254249 -96375871 + B3A SINE B2 3 198 0 5 1037 191 286 31 16 chr4 59254817 59254881 -96375239 - L3 LINE CR1 -739 3750 3686 5 1037 567 107 0 0 chr4 59255011 59255095 -96375025 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1037 200 317 17 0 chr4 59255188 59255248 -96374872 - MIRm SINE MIR 0 276 216 5 1037 683 265 70 20 chr4 59255259 59255459 -96374661 - MER63A DNA AcHobo 0 210 1 5 1037 325 346 99 59 chr4 59255601 59255822 -96374298 + B4A SINE B4 46 275 -17 5 1037 240 35 0 0 chr4 59255847 59255876 -96374244 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1037 923 114 6 0 chr4 59255876 59256041 -96374079 + (CA)n Simple_repeat Simple_repeat 1 167 0 5 1037 207 0 0 0 chr4 59256041 59256063 -96374057 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1037 186 43 0 0 chr4 59256063 59256085 -96374035 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1037 254 286 0 106 chr4 59256090 59256184 -96373936 - B1_Mur2 SINE Alu -35 114 31 5 1037 325 301 110 14 chr4 59256607 59256826 -96373294 + MLT1D LTR MaLR 259 498 -7 5 1037 414 0 0 0 chr4 59258141 59258187 -96371933 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 5 1037 665 234 85 35 chr4 59258490 59258689 -96371431 + B3 SINE B2 2 210 -6 5 1037 245 341 36 15 chr4 59259077 59259214 -96370906 + MIR SINE MIR 1 140 -122 5 1037 894 156 7 0 chr4 59259220 59259361 -96370759 + B1_Mur4 SINE Alu 2 143 -7 5 1037 222 37 0 0 chr4 59259363 59259390 -96370730 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1037 763 237 10 72 chr4 59259907 59260116 -96370004 + B3A SINE B2 2 197 -1 5 1037 2510 99 6 3 chr4 59260143 59260488 -96369632 + ORR1A1 LTR MaLR 1 346 0 5 1037 266 0 29 0 chr4 59260732 59260766 -96369354 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1037 1041 262 97 6 chr4 59260888 59261229 -96368891 - MLT1B LTR MaLR -12 378 7 5 1037 390 21 0 0 chr4 59261289 59261336 -96368784 + (TATG)n Simple_repeat Simple_repeat 4 50 0 5 1037 207 245 0 0 chr4 59261337 59261431 -96368689 + GA-rich Low_complexity Low_complexity 1 94 0 5 1037 449 108 47 47 chr4 59261441 59261548 -96368572 + Lx9 LINE L1 7532 7638 -6 5 1037 246 128 0 0 chr4 59261587 59261626 -96368494 + (TTC)n Simple_repeat Simple_repeat 1 39 0 6 1037 830 158 281 0 chr4 59261628 59261792 -96368328 - B3 SINE B2 -6 210 1 6 1037 1532 48 27 0 chr4 59262032 59262220 -96367900 + B2_Mm1a SINE B2 1 193 0 6 1037 472 170 223 0 chr4 59262580 59262692 -96367428 - B1_Mur2 SINE Alu -12 137 1 6 1037 281 278 88 11 chr4 59263018 59263109 -96367011 + Lx8 LINE L1 7231 7328 -145 6 1037 25 75 0 0 chr4 59263188 59263241 -96366879 + AT_rich Low_complexity Low_complexity 1 53 0 6 1037 611 191 88 0 chr4 59263256 59263392 -96366728 + B1_Mur2 SINE Alu 1 148 -1 6 1037 1220 35 7 0 chr4 59263402 59263547 -96366573 + B1_Mus2 SINE Alu 2 147 0 6 1037 513 0 0 0 chr4 59263678 59263735 -96366385 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 6 1037 633 251 72 0 chr4 59263759 59263926 -96366194 + MIR SINE MIR 24 202 -60 6 1037 242 286 124 23 chr4 59264426 59264555 -96365565 + MER5B DNA MER1_type 37 178 0 6 1037 277 177 141 3 chr4 59264760 59264860 -96365260 + B4 SINE B4 1 113 -179 6 1037 1113 197 9 27 chr4 59264951 59265170 -96364950 + B3 SINE B2 2 216 0 6 1037 741 169 0 16 chr4 59266596 59266722 -96363398 + B3 SINE B2 7 130 -86 6 1037 1214 41 7 0 chr4 59266782 59266928 -96363192 + B1_Mus1 SINE Alu 2 148 0 6 1037 180 0 0 0 chr4 59266951 59266971 -96363149 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 6 1037 211 190 0 33 chr4 59267000 59267060 -96363060 + GA-rich Low_complexity Low_complexity 4 61 0 6 1037 198 0 0 0 chr4 59267656 59267678 -96362442 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1037 680 300 54 75 chr4 59267785 59268120 -96362000 + Lx8 LINE L1 7004 7331 -142 6 1037 886 124 19 19 chr4 59268151 59268307 -96361813 + B2_Mm2 SINE B2 2 157 -38 6 1037 414 0 0 0 chr4 59268309 59268355 -96361765 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 6 1037 802 285 34 11 chr4 59268487 59268753 -96361367 - L1MB8 LINE L1 -120 6058 5787 6 1037 880 144 50 0 chr4 59270311 59270450 -96359670 - B1_Mus2 SINE Alu 0 147 2 6 1037 998 149 0 13 chr4 59271178 59271328 -96358792 + B1_Mur3 SINE Alu 1 148 -1 6 1037 204 292 63 9 chr4 59271539 59271642 -96358478 + L2a LINE L2 3271 3426 0 6 1037 202 254 34 0 chr4 59272843 59272902 -96357218 - MIRm SINE MIR -162 114 54 6 1037 713 93 0 9 chr4 59272971 59273079 -96357041 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 6 1037 1120 72 0 0 chr4 59273095 59273233 -96356887 - B1_Mus1 SINE Alu -10 138 1 6 1037 201 39 0 0 chr4 59273320 59273346 -96356774 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1037 512 241 242 12 chr4 59273675 59273837 -96356283 - ORR1D2 LTR MaLR -3 367 189 6 1037 182 37 37 0 chr4 59273837 59273864 -96356256 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1037 512 203 69 25 chr4 59273864 59273949 -96356171 - ORR1D2 LTR MaLR -182 188 22 6 1037 405 38 0 0 chr4 59274473 59274485 -96355635 + (T)n Simple_repeat Simple_repeat 1 12 0 6 1037 1251 27 0 0 chr4 59274485 59274631 -96355489 - B1_Mm SINE Alu 0 147 2 6 1037 405 38 0 0 chr4 59274631 59274671 -96355449 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1037 265 325 0 0 chr4 59275105 59275182 -96354938 + ID4_ SINE ID 7 83 0 6 1037 216 326 11 34 chr4 59275182 59275194 -96354926 + ID_B1 SINE B4 7 93 -131 6 1037 444 118 0 0 chr4 59275416 59275484 -96354636 + (A)n Simple_repeat Simple_repeat 1 68 0 6 1037 186 43 0 0 chr4 59275613 59275636 -96354484 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1037 341 63 191 0 chr4 59275636 59275699 -96354421 - BC1_Mm scRNA scRNA -77 75 1 6 1037 322 262 19 113 chr4 59276585 59276744 -96353376 - MIRb SINE MIR -56 212 69 6 1037 256 252 88 82 chr4 59277120 59277267 -96352853 - MER104 DNA Tc2 -13 168 21 6 1037 200 227 0 22 chr4 59278368 59278413 -96351707 + CT-rich Low_complexity Low_complexity 6 49 0 6 1037 2571 165 163 100 chr4 59278880 59279572 -96350548 + RMER19A LTR ERVK 1 736 -1 6 1037 499 272 0 0 chr4 59279723 59279826 -96350294 - B1F SINE Alu -40 109 7 6 1037 986 248 5 5 chr4 59279952 59280167 -96349953 + B3 SINE B2 2 216 0 6 1037 194 0 39 0 chr4 59280504 59280530 -96349590 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1037 1178 50 0 0 chr4 59280532 59280673 -96349447 - B1_Mm SINE Alu -6 141 1 6 1037 251 322 91 67 chr4 59280809 59281220 -96348900 - MLT1G LTR MaLR -28 521 102 6 1037 42 0 0 0 chr4 59281294 59281336 -96348784 + AT_rich Low_complexity Low_complexity 1 42 0 6 1037 754 212 78 11 chr4 59281349 59281360 -96348760 - B3 SINE B2 -12 204 194 6 1037 2050 105 72 3 chr4 59281360 59281666 -96348454 - ORR1A2 LTR MaLR 0 327 1 6 1037 839 212 78 11 chr4 59281666 59281845 -96348275 - B3A SINE B2 -23 193 1 6 1037 1038 256 77 31 chr4 59282035 59282386 -96347734 - MTE2b LTR MaLR -12 367 1 6 1037 692 249 101 13 chr4 59282492 59282720 -96347400 - Lx8 LINE L1 0 7473 7226 6 1037 1010 266 59 14 chr4 59282719 59283005 -96347115 + Lx8 LINE L1 6886 7184 -289 6 1037 1035 39 23 0 chr4 59283096 59283225 -96346895 - B1_Mus2 SINE Alu -15 132 1 6 1037 1466 68 5 5 chr4 59283230 59283422 -96346698 - L1_Mus1 LINE L1 0 6567 6376 6 1037 975 49 0 34 chr4 59283424 59283571 -96346549 - B1_Mm SINE Alu 0 147 6 6 1037 390 233 44 109 chr4 59283427 59283610 -96346510 - B4A SINE B4 -68 224 54 6 1037 5685 60 7 54 chr4 59283610 59284529 -96345591 - L1_Mus2 LINE L1 -224 6342 5467 6 1037 10103 70 45 53 chr4 59284526 59284996 -96345124 + L1_Mm LINE L1 3954 4442 -1441 6 1037 998 72 65 0 chr4 59284996 59285134 -96344986 + B1_Mus2 SINE Alu 1 147 0 6 1037 10103 70 45 53 chr4 59285134 59286182 -96343938 + L1_Mm LINE L1 4443 5459 -424 6 1037 204 40 0 0 chr4 59287186 59287211 -96342909 + (CTGTG)n Simple_repeat Simple_repeat 3 27 0 6 1037 226 230 108 0 chr4 59287321 59287395 -96342725 + L1MD LINE L1 2476 2557 -3589 6 1037 1157 292 147 20 chr4 59287434 59288217 -96341903 + Lx9 LINE L1 6453 7334 -310 6 1037 233 217 39 94 chr4 59288239 59288366 -96341754 + Lx9 LINE L1 7393 7512 -132 6 1037 266 132 0 19 chr4 59288368 59288422 -96341698 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1037 296 152 58 43 chr4 59288731 59288800 -96341320 - B3 SINE B2 -146 70 1 6 1037 644 168 9 0 chr4 59289155 59289268 -96340852 + B1_Mus1 SINE Alu 3 116 -32 6 1037 453 189 0 0 chr4 59289356 59289446 -96340674 + (TA)n Simple_repeat Simple_repeat 1 90 0 6 1037 264 253 40 13 chr4 59289474 59289550 -96340570 + ID4 SINE ID 2 79 -4 6 1037 1169 43 0 0 chr4 59289668 59289809 -96340311 + B1_Mus2 SINE Alu 1 141 -6 6 1037 243 0 0 0 chr4 59289811 59289838 -96340282 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1037 345 258 22 0 chr4 59289904 59289993 -96340127 + PB1D9 SINE Alu 25 115 -5 6 1037 189 0 0 0 chr4 59290013 59290034 -96340086 + (GGAAA)n Simple_repeat Simple_repeat 3 23 0 6 1037 261 247 0 61 chr4 59290244 59290326 -96339794 + B4 SINE B4 2 78 -214 6 1037 325 58 39 0 chr4 59290411 59290463 -96339657 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1037 1216 28 7 0 chr4 59290542 59290685 -96339435 - B1_Mus2 SINE Alu -3 144 1 6 1037 291 114 0 0 chr4 59290697 59290741 -96339379 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1037 600 304 82 22 chr4 59290873 59291142 -96338978 - B4 SINE B4 -2 290 6 6 1037 216 250 103 0 chr4 59291223 59291291 -96338829 - PB1D9 SINE Alu -12 108 34 6 1037 1663 31 0 20 chr4 59291872 59292068 -96338052 - B2_Mm1t SINE B2 0 193 2 6 1037 836 160 21 0 chr4 59292509 59292653 -96337467 + B1_Mus1 SINE Alu 2 148 0 6 1037 638 270 51 6 chr4 59292811 59292986 -96337134 - B3A SINE B2 -14 184 2 6 1037 1242 48 0 0 chr4 59293436 59293583 -96336537 + B1_Mus2 SINE Alu 1 147 0 6 1037 246 62 0 0 chr4 59293583 59293615 -96336505 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1037 376 229 2 9 chr4 59294192 59294287 -96335833 + B4 SINE B4 3 95 -70 6 1037 258 316 13 0 chr4 59294461 59294537 -96335583 + B4A SINE B4 1 77 -215 6 1037 965 211 80 10 chr4 59294566 59294767 -96335353 + B3 SINE B2 2 216 0 6 1037 431 243 243 26 chr4 59294819 59294971 -96335149 + B4 SINE B4 108 292 0 6 1037 189 0 0 0 chr4 59294987 59295008 -96335112 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1037 407 256 13 155 chr4 59296316 59296440 -96333680 - Cheshire DNA MER1_type -2176 244 131 6 1037 754 196 15 0 chr4 59296440 59296573 -96333547 - B1_Mus1 SINE Alu -12 136 2 6 1037 407 256 13 155 chr4 59296573 59296629 -96333491 - Cheshire DNA MER1_type -2290 130 83 6 1037 292 169 123 0 chr4 59296629 59296694 -96333426 + ID4 SINE ID 2 74 -9 6 1037 407 256 13 155 chr4 59296694 59296738 -96333382 - Cheshire DNA MER1_type -2338 82 51 6 1037 759 233 197 16 chr4 59296985 59297229 -96332891 - B4 SINE B4 -4 288 1 6 1037 1059 30 0 77 chr4 59298098 59298241 -96331879 + B1_Mus1 SINE Alu 5 136 -12 6 1037 399 21 0 0 chr4 59298272 59298320 -96331800 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1037 240 250 0 18 chr4 59298500 59298557 -96331563 + G-rich Low_complexity Low_complexity 2 57 0 6 1037 522 209 13 86 chr4 59299067 59299219 -96330901 - B1_Mur1 SINE Alu -7 142 2 6 1037 413 348 60 46 chr4 59299440 59299467 -96330653 + MER58B DNA MER1_type 52 73 -268 6 1037 1140 71 143 0 chr4 59299467 59299635 -96330485 - B2_Mm1t SINE B2 -1 192 1 6 1037 413 348 60 46 chr4 59299635 59299890 -96330230 + MER58B DNA MER1_type 74 338 -3 6 1037 531 161 0 86 chr4 59300493 59300690 -96329430 + GA-rich Low_complexity Low_complexity 1 180 0 6 1037 642 144 0 94 chr4 59300713 59301264 -96328856 + GA-rich Low_complexity Low_complexity 1 499 0 6 1037 206 262 30 15 chr4 59301458 59301524 -96328596 + MER5B DNA MER1_type 109 175 -3 6 1037 453 221 9 0 chr4 59301885 59301998 -96328122 - B1_Mm SINE Alu -32 115 2 6 1037 292 227 8 8 chr4 59302247 59302367 -96327753 + (CA)n Simple_repeat Simple_repeat 1 120 0 7 1037 496 214 6 6 chr4 59302379 59302548 -96327572 + (CA)n Simple_repeat Simple_repeat 1 169 0 7 1037 378 42 0 0 chr4 59302664 59302712 -96327408 + (GGA)n Simple_repeat Simple_repeat 1 48 0 7 1037 477 275 35 13 chr4 59302712 59302892 -96327228 - HAL1-2a_MD LINE L1 -516 2508 2343 7 1037 314 318 0 0 chr4 59303202 59303287 -96326833 - B1F SINE Alu 0 149 65 7 1037 425 260 10 39 chr4 59303307 59303411 -96326709 + PB1D10 SINE Alu 10 110 -7 7 1037 405 0 0 0 chr4 59303622 59303667 -96326453 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1037 577 250 112 94 chr4 59303696 59303983 -96326137 - B4 SINE B4 0 292 1 7 1037 1347 59 0 0 chr4 59304485 59304724 -96325396 + (TCTA)n Simple_repeat Simple_repeat 1 239 0 7 1037 371 179 15 15 chr4 59305485 59305553 -96324567 + Lx8 LINE L1 6579 6646 -827 7 1037 618 242 93 79 chr4 59305581 59305746 -96324374 + Lx8 LINE L1 6706 6885 -588 7 1037 942 9 0 0 chr4 59305746 59305853 -96324267 + (TTTCC)n Simple_repeat Simple_repeat 5 111 0 7 1037 1079 7 14 14 chr4 59305853 59305994 -96324126 + (TTC)n Simple_repeat Simple_repeat 2 143 0 7 1037 1138 59 0 0 chr4 59305994 59306130 -96323990 - B1_Mm SINE Alu -10 137 2 7 1037 618 242 93 79 chr4 59306130 59306177 -96323943 + Lx8 LINE L1 6886 6921 -552 7 1037 214 241 0 65 chr4 59307646 59307708 -96322412 - ID4_ SINE ID -11 72 15 7 1037 324 277 50 0 chr4 59308315 59308423 -96321697 + B1F SINE Alu 7 126 -23 7 1037 391 282 45 84 chr4 59308535 59308690 -96321430 + B4 SINE B4 75 223 -69 7 1037 868 98 8 0 chr4 59308561 59308693 -96321427 + B1_Mur3 SINE Alu 17 149 0 7 1037 527 78 0 13 chr4 59308693 59308765 -96321355 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 7 1037 1317 73 0 0 chr4 59308765 59308943 -96321177 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 1037 359 209 105 33 chr4 59309196 59309349 -96320771 + L1MA8 LINE L1 5118 5281 -859 7 1037 285 118 0 0 chr4 59309385 59309436 -96320684 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 7 1037 793 306 118 40 chr4 59309449 59309473 -96320647 + L1MA8 LINE L1 5507 5530 -761 7 1037 296 292 18 36 chr4 59309473 59309583 -96320537 + PB1D10 SINE Alu 2 109 -8 7 1037 793 306 118 40 chr4 59309583 59310034 -96320086 + L1MA8 LINE L1 5531 6019 -272 7 1037 369 0 0 0 chr4 59310171 59310212 -96319908 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1037 548 276 115 58 chr4 59310456 59310638 -96319482 + ID_B1 SINE B4 5 200 -24 7 1037 1429 66 28 0 chr4 59310638 59310820 -96319300 - B2_Mm2 SINE B2 -8 187 1 7 1037 548 276 115 58 chr4 59310820 59310845 -96319275 + ID_B1 SINE B4 201 224 0 7 1037 243 246 0 32 chr4 59310978 59311041 -96319079 + L1MA9 LINE L1 6251 6311 -1 7 1037 390 212 63 63 chr4 59311478 59311604 -96318516 - RLTR11B LTR ERVK -312 141 16 7 1037 1615 219 40 60 chr4 59312779 59313159 -96316961 - ORR1D1 LTR MaLR -2 372 1 7 1037 650 249 45 20 chr4 59313379 59313547 -96316573 + B3 SINE B2 1 169 -47 7 1037 1267 9 0 39 chr4 59313547 59313858 -96316262 + (CATA)n Simple_repeat Simple_repeat 1 301 -27 7 1037 1267 9 0 39 chr4 59313863 59313889 -96316231 + (CATA)n Simple_repeat Simple_repeat 302 328 0 7 1037 650 249 45 20 chr4 59313889 59313913 -96316207 + B3 SINE B2 175 203 -13 7 1037 1169 68 0 13 chr4 59314715 59314864 -96315256 + B1_Mus1 SINE Alu 2 148 0 7 1037 360 0 0 0 chr4 59314879 59314919 -96315201 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 7 1037 1438 169 76 37 chr4 59314919 59315211 -96314909 - RMER17C LTR ERVK -13 397 92 7 1037 540 0 0 0 chr4 59315211 59315271 -96314849 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1037 1438 169 76 37 chr4 59315271 59315360 -96314760 - RMER17C LTR ERVK -319 91 2 7 1037 3203 43 15 10 chr4 59315748 59316142 -96313978 - MTA_Mm LTR MaLR 0 396 1 7 1037 9329 37 2 0 chr4 59316142 59317238 -96312882 - MTA_Mm-int LTR MaLR 0 1098 1 7 1037 19636 21 0 0 chr4 59317280 59320185 -96309935 - L1Md_T LINE L1 0 6582 3678 7 1037 3273 44 13 0 chr4 59320185 59320574 -96309546 - MTA_Mm LTR MaLR -2 394 1 7 1037 660 304 104 91 chr4 59320736 59321286 -96308834 + MLT1E1A LTR MaLR 6 562 -118 7 1037 605 248 8 8 chr4 59321395 59321525 -96308595 + B1_Mur1 SINE Alu 3 132 -17 7 1037 324 0 0 0 chr4 59321559 59321595 -96308525 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1037 688 321 72 24 chr4 59321754 59322242 -96307878 - L1MC4a LINE L1 -1950 5932 5428 7 1037 354 326 22 11 chr4 59322283 59322466 -96307654 + L1MA4 LINE L1 5757 5941 -359 7 1037 1150 51 0 0 chr4 59322586 59322724 -96307396 - B1_Mus2 SINE Alu -8 139 2 7 1037 1985 73 39 26 chr4 59322785 59323096 -96307024 - ORR1A2 LTR MaLR -12 315 1 7 1037 1149 22 44 0 chr4 59323122 59323259 -96306861 + B1_Mus1 SINE Alu 1 143 -5 7 1037 203 111 35 69 chr4 59323268 59323326 -96306794 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 7 1037 367 248 158 9 chr4 59323410 59323524 -96306596 - B3A SINE B2 -38 160 30 7 1037 520 234 61 13 chr4 59323894 59324047 -96306073 + B3A SINE B2 3 151 -44 7 1037 1421 75 16 5 chr4 59324047 59324235 -96305885 + B2_Mm2 SINE B2 3 192 -3 7 1037 340 264 90 79 chr4 59324235 59324258 -96305862 + B2_Mm2 SINE B2 152 181 -14 7 1037 227 29 0 54 chr4 59324405 59324442 -96305678 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1037 1016 108 6 0 chr4 59324939 59325096 -96305024 + (TCTCC)n Simple_repeat Simple_repeat 5 162 0 7 1037 762 131 0 0 chr4 59325096 59325218 -96304902 + (TTC)n Simple_repeat Simple_repeat 1 122 0 7 1037 446 109 217 0 chr4 59325232 59325324 -96304796 - PB1D9 SINE Alu 0 120 9 7 1037 267 226 0 0 chr4 59325280 59325333 -96304787 - ID_B1 SINE B4 -91 133 81 7 1037 243 0 0 0 chr4 59325577 59325604 -96304516 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1037 423 0 0 0 chr4 59325604 59325650 -96304470 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1037 360 333 9 0 chr4 59325655 59325769 -96304351 - RSINE1 SINE B4 -6 159 45 7 1037 414 0 0 0 chr4 59326222 59326268 -96303852 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1037 1569 41 10 0 chr4 59327073 59327270 -96302850 - L1Md_F3 LINE L1 -1 6583 6385 7 1037 24 0 0 0 chr4 59329127 59329151 -96300969 + AT_rich Low_complexity Low_complexity 1 24 0 7 1037 276 337 117 84 chr4 59329455 59329796 -96300324 + MTEb LTR MaLR 1 341 -38 7 1037 435 212 71 0 chr4 59330070 59330155 -96299965 + PB1D10 SINE Alu 19 109 -8 7 1037 669 167 8 16 chr4 59330988 59331110 -96299010 + B1_Mus2 SINE Alu 26 146 -1 7 1037 477 0 0 0 chr4 59331121 59331174 -96298946 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1037 384 261 54 94 chr4 59332008 59332211 -96297909 + B3A SINE B2 3 197 -1 7 1037 1391 95 16 0 chr4 59332869 59333058 -96297062 - B2_Mm2 SINE B2 -2 193 2 7 1037 764 295 115 50 chr4 59333176 59333594 -96296526 - MLT1E3 LTR MaLR -34 590 146 7 1037 279 130 0 0 chr4 59333684 59333738 -96296382 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1037 228 122 0 0 chr4 59333764 59333805 -96296315 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 7 1037 234 272 35 58 chr4 59333806 59333892 -96296228 - MER2 DNA MER2_type -6 339 256 7 1037 458 316 56 11 chr4 59333908 59334087 -96296033 - MER2 DNA MER2_type -141 204 18 7 1037 435 232 20 31 chr4 59335287 59335385 -96294735 - PB1D9 SINE Alu -2 118 22 7 1037 228 284 39 51 chr4 59336561 59336639 -96293481 + MLT1J-int LTR MaLR 1212 1288 -99 7 1037 30 0 0 0 chr4 59336725 59336755 -96293365 + AT_rich Low_complexity Low_complexity 1 30 0 7 1037 331 257 69 10 chr4 59336892 59336994 -96293126 - PB1D10 SINE Alu -9 108 1 7 1037 217 313 70 10 chr4 59336905 59337005 -96293115 - ID_B1 SINE B4 -48 176 71 7 1037 237 178 0 0 chr4 59337076 59337121 -96292999 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1037 290 263 26 0 chr4 59337979 59338055 -96292065 - ID4 SINE ID -3 80 3 7 1037 322 299 41 0 chr4 59338208 59338305 -96291815 + MER117 DNA MER1_type 23 123 -74 7 1037 4184 70 0 9 chr4 59338354 59338888 -96291232 + L1_Mus2 LINE L1 6038 6566 0 7 1037 240 0 0 70 chr4 59338902 59338945 -96291175 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7 1037 22 0 0 0 chr4 59339237 59339259 -96290861 + AT_rich Low_complexity Low_complexity 1 22 0 7 1037 1200 62 0 0 chr4 59339894 59340039 -96290081 - B1_Mus2 SINE Alu -1 146 2 7 1037 967 236 80 132 chr4 59340060 59340446 -96289674 + MTE2a LTR MaLR 14 379 0 7 1037 213 39 0 0 chr4 59340491 59340517 -96289603 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1037 841 118 0 23 chr4 59340521 59340651 -96289469 + B1_Mus1 SINE Alu 22 148 0 7 1037 304 67 77 22 chr4 59340651 59340742 -96289378 + (CAAA)n Simple_repeat Simple_repeat 2 97 0 7 1037 322 264 440 27 chr4 59340747 59341007 -96289113 + L1M4 LINE L1 4955 5322 -824 7 1037 189 0 0 0 chr4 59341018 59341039 -96289081 + (TGG)n Simple_repeat Simple_repeat 3 23 0 7 1037 255 125 0 0 chr4 59341039 59341079 -96289041 + (CAG)n Simple_repeat Simple_repeat 3 42 0 7 1037 679 128 32 3 chr4 59341082 59341200 -96288920 + B1_Mur3 SINE Alu 8 141 -8 7 1037 506 235 113 15 chr4 59341214 59341402 -96288718 + L1M4 LINE L1 5290 5478 -705 7 1037 1257 99 38 16 chr4 59342078 59342263 -96287857 - B2_Mm2 SINE B2 -5 190 2 7 1037 791 174 39 13 chr4 59343496 59343678 -96286442 - B3 SINE B2 -4 191 2 7 1037 193 302 0 0 chr4 59344357 59344410 -96285710 + MER5A DNA MER1_type 53 105 -84 7 1037 656 302 46 18 chr4 59346028 59346308 -96283812 + L1MB4 LINE L1 5892 6179 -1 7 1037 912 109 88 0 chr4 59347456 59347593 -96282527 - B1_Mur4 SINE Alu 0 150 2 7 1037 180 271 20 20 chr4 59347999 59348048 -96282072 + MIR SINE MIR 116 164 -98 7 1037 833 139 27 20 chr4 59348490 59348637 -96281483 - B1_Mur4 SINE Alu 0 150 3 7 1037 274 331 79 0 chr4 59348951 59349078 -96281042 + MLT1K LTR MaLR 456 592 -3 7 1037 521 269 45 75 chr4 59351059 59351260 -96278860 + B4A SINE B4 3 197 -95 7 1037 228 35 0 0 chr4 59351264 59351293 -96278827 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 1037 186 191 0 0 chr4 59351385 59351427 -96278693 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1037 184 50 0 91 chr4 59352770 59352814 -96277306 + (CACCC)n Simple_repeat Simple_repeat 5 44 0 8 1037 1284 124 114 0 chr4 59353499 59353701 -96276419 + URR1A DNA MER1_type 2 226 0 8 1037 270 291 151 61 chr4 59354165 59354348 -96275772 - L2a LINE L2 -19 3407 3216 8 1037 964 123 50 96 chr4 59354348 59354546 -96275574 + B2_Mm2 SINE B2 1 189 -6 8 1037 270 291 151 61 chr4 59354546 59354607 -96275513 - L2a LINE L2 -211 3215 3142 8 1037 253 345 34 40 chr4 59355005 59355153 -96274967 - L2a LINE L2 -302 3073 2927 8 1037 37645 26 3 8 chr4 59355655 59360847 -96269273 + L1Md_T LINE L1 423 5586 -297 8 1037 8586 36 0 0 chr4 59360847 59361843 -96268277 + L1Md_T LINE L1 5587 6582 0 8 1037 590 263 117 31 chr4 59361961 59362157 -96267963 - B4A SINE B4 -77 215 3 8 1037 648 0 0 0 chr4 59362250 59362322 -96267798 + (CTG)n Simple_repeat Simple_repeat 1 72 0 8 1037 354 304 0 52 chr4 59362340 59362437 -96267683 - B1F SINE Alu -57 92 1 8 1037 599 271 5 72 chr4 59363167 59363374 -96266746 - B3A SINE B2 -4 194 2 8 1037 268 236 40 27 chr4 59363374 59363448 -96266672 + B1F SINE Alu 66 140 -9 8 1037 1223 106 28 0 chr4 59363452 59363632 -96266488 + B2_Mm1t SINE B2 6 190 -3 8 1037 23 0 0 0 chr4 59363649 59363672 -96266448 + AT_rich Low_complexity Low_complexity 1 23 0 8 1037 21 36 0 0 chr4 59364200 59364228 -96265892 + AT_rich Low_complexity Low_complexity 1 28 0 8 1037 1076 193 19 14 chr4 59364230 59364445 -96265675 - B3 SINE B2 0 216 1 8 1037 257 329 40 0 chr4 59365578 59365654 -96264466 - ID4_ SINE ID -2 81 3 8 1037 843 249 10 10 chr4 59365832 59366039 -96264081 + B3 SINE B2 1 207 -9 8 1037 632 220 0 8 chr4 59366057 59366176 -96263944 - PB1D9 SINE Alu 0 120 3 8 1037 331 294 133 35 chr4 59366750 59366976 -96263144 + MLT1D LTR MaLR 17 264 -241 8 1037 898 252 68 47 chr4 59366940 59367219 -96262901 + B4A SINE B4 8 292 0 8 1037 225 259 17 0 chr4 59367235 59367293 -96262827 + GA-rich Low_complexity Low_complexity 3 61 0 8 1037 616 328 11 0 chr4 59367455 59367641 -96262479 + MLT1D LTR MaLR 318 505 0 8 1037 445 187 214 21 chr4 59367736 59367864 -96262256 + B1_Mus1 SINE Alu 1 149 -1 8 1037 507 160 0 0 chr4 59367882 59367976 -96262144 + GA-rich Low_complexity Low_complexity 1 94 0 8 1037 1280 80 17 6 chr4 59367998 59368174 -96261946 + B2_Mm2 SINE B2 10 187 -8 8 1037 183 42 0 0 chr4 59368351 59368375 -96261745 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 8 1037 408 227 90 25 chr4 59368437 59368559 -96261561 + B3A SINE B2 69 198 0 8 1037 226 303 39 39 chr4 59368721 59368848 -96261272 + L1M5 LINE L1 4708 4834 -1312 8 1037 203 0 37 0 chr4 59368864 59368891 -96261229 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1037 1204 74 0 0 chr4 59368891 59369039 -96261081 - B1_Mus1 SINE Alu 0 148 1 8 1037 21 57 0 0 chr4 59369146 59369181 -96260939 + AT_rich Low_complexity Low_complexity 1 35 0 8 1037 1024 176 114 0 chr4 59369243 59369436 -96260684 - B3 SINE B2 -1 215 1 8 1037 183 42 0 0 chr4 59369444 59369468 -96260652 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1037 237 296 72 165 chr4 59369570 59369674 -96260446 + ORR1E LTR MaLR 12 106 -253 8 1037 861 185 0 20 chr4 59369674 59369823 -96260297 + B1_Mm SINE Alu 2 147 0 8 1037 237 296 72 165 chr4 59369823 59369912 -96260208 + ORR1E LTR MaLR 107 187 -172 8 1037 216 296 141 0 chr4 59369991 59370062 -96260058 - ID2 SINE ID -1 82 2 8 1037 1719 205 84 21 chr4 59370103 59370176 -96259944 + RMER13A LTR ERVK 1 81 -779 8 1037 3860 82 63 11 chr4 59370176 59370715 -96259405 + RMER2 LTR ERV1 1 567 0 8 1037 1719 205 84 21 chr4 59370715 59371024 -96259096 + RMER13A LTR ERVK 82 407 -453 8 1037 1220 259 8 54 chr4 59371877 59372269 -96257851 + MTE2b LTR MaLR 2 375 -4 8 1037 259 287 77 112 chr4 59372380 59372581 -96257539 - MIR SINE MIR -26 242 31 8 1037 438 295 76 38 chr4 59372872 59373136 -96256984 + B4A SINE B4 2 275 -17 8 1037 457 88 25 0 chr4 59373156 59373236 -96256884 + (CA)n Simple_repeat Simple_repeat 1 82 0 8 1037 258 32 0 0 chr4 59373292 59373323 -96256797 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1037 366 23 0 0 chr4 59373408 59373451 -96256669 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1037 251 278 98 82 chr4 59373545 59373800 -96256320 + L1MC4 LINE L1 449 707 -5508 8 1037 580 248 44 5 chr4 59373940 59374143 -96255977 + L1MC4 LINE L1 901 1111 -5104 8 1037 825 120 32 0 chr4 59374176 59374301 -96255819 - B1_Mur1 SINE Alu 0 149 21 8 1037 387 324 66 16 chr4 59374321 59374578 -96255542 + L1MC4 LINE L1 1196 1465 -4846 8 1037 1122 76 14 0 chr4 59374910 59375055 -96255065 + B1_Mus2 SINE Alu 1 147 0 8 1038 189 281 47 0 chr4 59376771 59376835 -96253285 + MER5A DNA MER1_type 94 160 -29 8 1038 186 143 0 0 chr4 59377168 59377203 -96252917 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 8 1038 2713 132 67 29 chr4 59377860 59378306 -96251814 + RLTR25A LTR ERVK 1 463 -640 8 1038 398 186 11 34 chr4 59379898 59379987 -96250133 - B4A SINE B4 -76 216 130 8 1038 845 224 97 15 chr4 59380372 59380567 -96249553 + B3 SINE B2 6 216 0 8 1038 222 37 0 0 chr4 59380810 59380837 -96249283 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1038 240 247 0 0 chr4 59382695 59382780 -96247340 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1038 934 199 61 118 chr4 59382800 59383096 -96247024 - B4A SINE B4 0 292 14 8 1038 621 190 224 0 chr4 59383136 59383310 -96246810 - B3 SINE B2 0 216 4 8 1038 606 235 29 0 chr4 59383321 59383457 -96246663 - B1F SINE Alu -7 142 3 8 1038 225 345 35 0 chr4 59383508 59383595 -96246525 + MIRc SINE MIR 116 205 -63 8 1038 1097 130 37 31 chr4 59384098 59384132 -96245988 - B2_Mm1a SINE B2 0 193 159 8 1038 261 0 0 0 chr4 59384132 59384161 -96245959 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1038 1097 130 37 31 chr4 59384161 59384317 -96245803 - B2_Mm1a SINE B2 -35 158 2 8 1038 406 216 0 0 chr4 59385320 59385394 -96244726 - 5S rRNA rRNA -34 87 14 8 1038 511 29 0 42 chr4 59386039 59386110 -96244010 - B1_Mus2 SINE Alu -1 146 79 8 1038 528 125 0 0 chr4 59386198 59386294 -96243826 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1038 351 238 170 9 chr4 59387928 59388034 -96242086 + B3 SINE B2 3 125 -91 8 1038 1529 154 40 180 chr4 59388205 59388632 -96241488 + ORR1B2 LTR MaLR 1 367 0 8 1038 654 195 39 0 chr4 59388980 59389108 -96241012 + ID_B1 SINE B4 84 216 -8 8 1038 378 0 0 0 chr4 59389108 59389150 -96240970 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1038 317 216 124 11 chr4 59389337 59389426 -96240694 + B1F1 SINE Alu 51 149 0 8 1038 229 322 40 40 chr4 59389362 59389488 -96240632 + B4 SINE B4 165 290 -2 8 1038 477 0 0 0 chr4 59389679 59389732 -96240388 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1038 191 294 58 19 chr4 59390150 59390202 -96239918 - MIRb SINE MIR -192 76 23 8 1038 735 115 15 8 chr4 59390550 59390586 -96239534 + (TTTTC)n Simple_repeat Simple_repeat 5 41 0 8 1038 1215 54 0 0 chr4 59390586 59390734 -96239386 - B1_Mus1 SINE Alu 0 148 1 8 1038 735 115 15 8 chr4 59390734 59390828 -96239292 + (TTTTC)n Simple_repeat Simple_repeat 5 99 0 8 1038 1533 62 16 0 chr4 59390829 59391021 -96239099 - B2_Mm2 SINE B2 0 195 1 8 1038 556 284 76 5 chr4 59391139 59391323 -96238797 - B3A SINE B2 0 198 2 8 1038 822 188 153 67 chr4 59391536 59391804 -96238316 - B4A SINE B4 -1 291 1 8 1038 679 224 42 0 chr4 59391816 59391959 -96238161 - B1_Mur1 SINE Alu 0 149 1 8 1038 204 286 0 49 chr4 59393572 59393653 -96236467 + G-rich Low_complexity Low_complexity 4 80 0 8 1038 402 241 95 118 chr4 59394589 59394810 -96235310 + L1M4 LINE L1 4190 4405 -1741 8 1038 381 248 9 73 chr4 59395742 59395851 -96234269 + B3A SINE B2 44 145 -53 8 1038 600 14 0 0 chr4 59395949 59396018 -96234102 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1038 239 51 0 71 chr4 59396452 59396494 -96233626 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1038 691 232 57 13 chr4 59397116 59397273 -96232847 + RSINE1 SINE B4 2 165 0 8 1038 180 111 0 0 chr4 59400156 59400183 -96229937 + (TA)n Simple_repeat Simple_repeat 1 27 0 8 1038 387 319 32 73 chr4 59400275 59400465 -96229655 + MIRb SINE MIR 10 205 -63 8 1038 537 301 7 0 chr4 59402368 59402511 -96227609 + B4 SINE B4 1 144 -148 8 1038 1262 41 0 0 chr4 59402523 59402670 -96227450 + B1_Mus2 SINE Alu 1 147 0 8 1038 911 278 80 25 chr4 59402731 59403056 -96227064 + L1MB2 LINE L1 5776 6118 -53 8 1038 345 109 0 0 chr4 59404185 59404240 -96225880 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 8 1038 336 214 66 10 chr4 59404399 59404504 -96225616 + PB1D10 SINE Alu 19 127 -22 8 1038 1155 56 7 0 chr4 59405291 59405435 -96224685 + B1_Mm SINE Alu 1 145 -2 8 1038 1088 90 12 0 chr4 59405435 59405601 -96224519 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 8 1038 510 237 50 44 chr4 59405884 59406043 -96224077 + ID_B1 SINE B4 2 161 -63 8 1038 707 197 0 0 chr4 59406039 59406171 -96223949 + B1_Mur1 SINE Alu 7 138 -11 8 1038 249 33 0 0 chr4 59406173 59406203 -96223917 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 8 1038 342 0 0 0 chr4 59406237 59406275 -96223845 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1038 474 214 0 10 chr4 59406654 59406753 -96223367 + BC1_Mm scRNA scRNA 2 99 -53 8 1038 362 332 76 46 chr4 59407881 59408217 -96221903 + ORR1E LTR MaLR 15 379 0 8 1038 2286 318 91 58 chr4 59408218 59408893 -96221227 + ORR1E-int LTR MaLR 3 694 -886 8 1038 1633 45 0 0 chr4 59408893 59409091 -96221029 + L1Md_T LINE L1 6385 6582 0 8 1038 2286 318 91 58 chr4 59409091 59409890 -96220230 + ORR1E-int LTR MaLR 695 1527 -53 8 1038 724 288 75 45 chr4 59409890 59410221 -96219899 + ORR1E LTR MaLR 1 341 -18 8 1038 203 250 0 0 chr4 59410386 59410426 -96219694 + polypyrimidine Low_complexity Low_complexity 4 43 0 8 1038 692 304 71 35 chr4 59411058 59411476 -96218644 + L1MA4 LINE L1 5489 5922 -378 8 1038 441 95 0 0 chr4 59411476 59411539 -96218581 + (TA)n Simple_repeat Simple_repeat 1 63 0 9 1038 376 150 150 0 chr4 59411546 59411626 -96218494 - RLTR47_MM LTR ERV1 -86 446 355 9 1038 191 329 20 48 chr4 59411826 59411973 -96218147 - MIRb SINE MIR -57 211 69 9 1038 711 250 84 20 chr4 59412386 59412635 -96217485 + RMER15 LTR ERVL 296 560 -15 9 1038 864 117 0 0 chr4 59414646 59414774 -96215346 + B1_Mur2 SINE Alu 1 128 -21 9 1038 288 279 279 0 chr4 59414922 59415105 -96215015 + B4A SINE B4 57 290 -2 9 1038 456 19 0 0 chr4 59415134 59415187 -96214933 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1038 260 304 28 56 chr4 59415702 59415810 -96214310 - MER117 DNA MER1_type -20 177 73 9 1038 344 268 43 26 chr4 59415812 59415927 -96214193 + PB1 SINE Alu 3 119 -8 9 1038 262 161 189 0 chr4 59416328 59416413 -96213707 - B1F SINE Alu 0 149 6 9 1038 951 96 0 0 chr4 59416423 59416559 -96213561 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 9 1038 600 71 35 17 chr4 59416612 59416727 -96213393 + (TCTCTG)n Simple_repeat Simple_repeat 3 119 0 9 1038 387 0 0 0 chr4 59416727 59416769 -96213351 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1038 367 267 48 54 chr4 59417693 59417879 -96212241 - L1MA5 LINE L1 0 6300 6116 9 1038 413 273 98 118 chr4 59417924 59418211 -96211909 + B4 SINE B4 5 285 -7 9 1038 189 0 0 0 chr4 59418212 59418233 -96211887 + (CG)n Simple_repeat Simple_repeat 2 22 0 9 1038 198 0 0 0 chr4 59418232 59418254 -96211866 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1038 232 262 134 101 chr4 59418254 59418373 -96211747 + B4A SINE B4 73 195 -97 9 1038 1108 233 42 23 chr4 59418507 59418815 -96211305 + Lx8 LINE L1 7043 7356 -117 9 1038 399 73 0 0 chr4 59419217 59419272 -96210848 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1038 1458 78 16 0 chr4 59419606 59419798 -96210322 - B2_Mm2 SINE B2 0 195 1 9 1038 741 177 56 14 chr4 59419845 59419988 -96210132 - B1_Mur2 SINE Alu 0 149 1 9 1038 316 113 0 36 chr4 59420025 59420080 -96210040 - HAL1-3A_ME LINE L1 -831 2027 1975 9 1038 639 206 0 0 chr4 59420082 59420247 -96209873 + (TG)n Simple_repeat Simple_repeat 2 166 0 9 1038 679 201 48 67 chr4 59420250 59420415 -96209705 - RSINE1 SINE B4 0 165 4 9 1038 1090 293 127 17 chr4 59420415 59420989 -96209131 - L1MA5 LINE L1 -349 5951 5315 9 1038 594 297 65 0 chr4 59421007 59421192 -96208928 - B3A SINE B2 -1 197 1 9 1038 3210 117 6 4 chr4 59421219 59421850 -96208270 + Lx5 LINE L1 5408 6046 -1004 9 1038 234 286 54 0 chr4 59421896 59421952 -96208168 - B1_Mus1 SINE Alu -88 60 2 9 1038 464 210 33 98 chr4 59422084 59422137 -96207983 - MTE2b LTR MaLR 0 379 334 9 1038 1520 59 16 0 chr4 59422137 59422324 -96207796 + B2_Mm2 SINE B2 1 190 -5 9 1038 464 210 33 98 chr4 59422324 59422423 -96207697 - MTE2b LTR MaLR -46 333 237 9 1038 654 331 53 4 chr4 59422445 59422688 -96207432 - MTE2b LTR MaLR -120 259 5 9 1038 714 195 12 70 chr4 59423581 59423752 -96206368 + RSINE1 SINE B4 5 165 0 9 1038 831 153 0 7 chr4 59424720 59424858 -96205262 - B1_Mur4 SINE Alu -13 137 1 9 1038 304 232 0 138 chr4 59424742 59424872 -96205248 - MT2B LTR ERVL -337 264 153 9 1038 313 236 14 0 chr4 59425501 59425573 -96204547 + ID4_ SINE ID 1 73 -10 9 1038 218 184 0 0 chr4 59425573 59425611 -96204509 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1038 189 0 0 0 chr4 59425611 59425632 -96204488 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 1038 621 210 46 92 chr4 59425651 59425803 -96204317 + B1_Mur1 SINE Alu 4 148 -1 9 1038 247 260 0 0 chr4 59425824 59425874 -96204246 + ID4 SINE ID 20 69 -14 9 1038 411 21 0 0 chr4 59425877 59425925 -96204195 + (CTA)n Simple_repeat Simple_repeat 1 48 0 9 1038 1226 68 0 0 chr4 59426167 59426314 -96203806 + B1_Mus2 SINE Alu 1 147 0 9 1038 270 73 0 0 chr4 59426314 59426355 -96203765 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1038 422 249 97 51 chr4 59426391 59426586 -96203534 + B3 SINE B2 1 204 -12 9 1038 1787 209 46 12 chr4 59426836 59427247 -96202873 + RLTR20C LTR ERVK 1 425 -109 9 1038 829 121 0 12 chr4 59427248 59427415 -96202705 + (TC)n Simple_repeat Simple_repeat 2 166 0 9 1038 317 274 53 0 chr4 59427415 59427510 -96202610 + RLTR20C LTR ERVK 435 534 0 9 1038 298 345 98 67 chr4 59427714 59427938 -96202182 - B4 SINE B4 -15 277 47 9 1038 479 309 0 0 chr4 59428947 59429083 -96201037 + B1F SINE Alu 1 136 -13 9 1038 588 73 0 0 chr4 59429114 59429196 -96200924 + (CAGG)n Simple_repeat Simple_repeat 2 83 0 9 1038 274 247 39 0 chr4 59429603 59429680 -96200440 + ID4_ SINE ID 2 81 -2 9 1038 221 98 24 0 chr4 59429770 59429811 -96200309 + (TATAA)n Simple_repeat Simple_repeat 5 46 0 9 1038 261 0 0 0 chr4 59429856 59429885 -96200235 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 9 1038 1040 180 30 0 chr4 59429887 59430087 -96200033 - B3 SINE B2 -9 207 2 9 1038 266 288 156 28 chr4 59430470 59430688 -96199432 - MIR SINE MIR -2 260 15 9 1038 702 210 120 43 chr4 59430828 59431012 -96199108 - B3A SINE B2 0 198 1 9 1038 416 305 77 7 chr4 59431245 59431400 -96198720 - L1MB3 LINE L1 -3 6180 6015 9 1038 216 0 0 0 chr4 59431415 59431439 -96198681 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9 1038 369 126 14 0 chr4 59431455 59431520 -96198600 - B2_Mm2 SINE B2 -82 116 46 9 1038 1227 97 17 17 chr4 59431565 59431744 -96198376 - B2_Mm1t SINE B2 -13 180 2 9 1038 239 232 134 0 chr4 59431747 59431829 -96198291 - L1MB3 LINE L1 -166 6005 5913 9 1038 563 317 43 46 chr4 59431942 59432223 -96197897 - L1MB3 LINE L1 -362 5821 5542 9 1038 1688 165 70 47 chr4 59432860 59433287 -96196833 + RMER10A LTR ERVL 1 437 -5 9 1038 282 160 0 0 chr4 59433287 59433337 -96196783 + CT-rich Low_complexity Low_complexity 1 50 0 9 1038 219 88 0 0 chr4 59433861 59433895 -96196225 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1038 284 238 0 77 chr4 59434202 59434293 -96195827 - B1_Mur2 SINE Alu -1 148 65 9 1038 441 246 26 0 chr4 59434264 59434378 -96195742 - B1_Mur1 SINE Alu -27 122 6 9 1038 221 310 60 26 chr4 59434277 59434393 -96195727 - B4 SINE B4 -94 198 79 9 1038 731 165 0 57 chr4 59434601 59434742 -96195378 + B1_Mus2 SINE Alu 3 135 -12 9 1038 213 65 0 0 chr4 59434743 59434774 -96195346 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1038 251 279 0 14 chr4 59435468 59435537 -96194583 + RSINE1 SINE B4 3 70 -95 9 1038 462 244 35 51 chr4 59435681 59435936 -96194184 - RMER17C LTR ERVK -159 251 1 9 1038 243 0 0 0 chr4 59436018 59436045 -96194075 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1038 375 73 0 0 chr4 59436045 59436100 -96194020 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1038 1504 195 194 22 chr4 59436395 59436751 -96193369 - MTD LTR MaLR -2 417 1 9 1038 212 323 0 15 chr4 59437317 59437383 -96192737 + ID4_ SINE ID 2 66 -17 9 1038 381 319 17 70 chr4 59437420 59437592 -96192528 + RSINE1 SINE B4 3 165 0 9 1038 462 288 71 62 chr4 59437660 59437886 -96192234 + B4 SINE B4 61 288 -4 9 1038 596 280 25 0 chr4 59438079 59438236 -96191884 - B3A SINE B2 -37 161 1 9 1038 774 136 0 23 chr4 59438595 59438715 -96191405 + B1_Mur4 SINE Alu 18 137 -13 9 1038 234 0 0 0 chr4 59438715 59438741 -96191379 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 9 1038 1482 147 5 0 chr4 59439108 59439332 -96190788 - URR1B DNA MER1_type 0 225 1 9 1038 344 294 83 122 chr4 59439645 59439747 -96190373 + B4A SINE B4 2 96 -196 9 1038 693 171 41 35 chr4 59439747 59439892 -96190228 + B1_Mus2 SINE Alu 2 147 0 9 1038 344 294 83 122 chr4 59439892 59439913 -96190207 + B4A SINE B4 97 105 -187 9 1038 642 26 0 0 chr4 59439913 59439989 -96190131 + (GGGAA)n Simple_repeat Simple_repeat 4 79 0 9 1038 344 294 83 122 chr4 59439989 59440166 -96189954 + B4A SINE B4 106 291 -1 9 1038 1117 180 16 0 chr4 59441562 59441756 -96188364 + B3 SINE B2 1 197 -19 9 1038 234 100 50 0 chr4 59442239 59442279 -96187841 + ID_B1 SINE B4 178 219 -5 9 1038 25 0 0 0 chr4 59442387 59442412 -96187708 + AT_rich Low_complexity Low_complexity 1 25 0 9 1038 189 107 0 0 chr4 59442891 59442919 -96187201 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1038 509 252 42 62 chr4 59442924 59443068 -96187052 - B4 SINE B4 -14 278 138 9 1038 415 233 0 0 chr4 59443679 59443769 -96186351 + B3A SINE B2 2 91 -107 9 1038 550 219 235 6 chr4 59443761 59443931 -96186189 + ID_B1 SINE B4 13 221 -3 9 1038 211 267 0 0 chr4 59443931 59443976 -96186144 + GA-rich Low_complexity Low_complexity 1 45 0 9 1038 3292 43 96 4 chr4 59444038 59444508 -96185612 + MURVY-LTR LTR ERV1 1 513 -6 9 1038 225 223 145 43 chr4 59444599 59444716 -96185404 + MIR SINE MIR 69 197 -65 9 1038 1240 202 238 15 chr4 59445113 59445454 -96184666 - MTD LTR MaLR 0 419 3 9 1038 1139 107 0 11 chr4 59445859 59446038 -96184082 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 9 1038 351 200 12 24 chr4 59446535 59446617 -96183503 - ID4_ SINE ID -1 82 2 9 1038 360 0 0 0 chr4 59446732 59446772 -96183348 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1038 525 193 33 0 chr4 59447416 59447662 -96182458 + (CA)n Simple_repeat Simple_repeat 1 254 0 9 1038 381 43 0 0 chr4 59447973 59448020 -96182100 + (GGA)n Simple_repeat Simple_repeat 3 49 0 9 1038 240 271 33 17 chr4 59448406 59448466 -96181654 + B1F1 SINE Alu 1 61 -88 9 1038 363 23 0 0 chr4 59448504 59448548 -96181572 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1038 364 167 45 0 chr4 59448658 59448724 -96181396 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 9 1038 275 268 50 40 chr4 59448724 59448759 -96181361 + BC1_Mm scRNA scRNA 7 108 -44 9 1038 2132 173 17 15 chr4 59448896 59449306 -96180814 + MTD LTR MaLR 1 411 -8 1 1038 587 112 101 18 chr4 59449433 59449542 -96180578 + B1_Mus2 SINE Alu 26 143 -4 1 1038 371 255 88 0 chr4 59449657 59449759 -96180361 - PB1D7 SINE Alu -1 119 9 1 1038 474 198 0 47 chr4 59450060 59450166 -96179954 - B1F SINE Alu 0 149 49 1 1038 468 0 0 0 chr4 59450549 59450601 -96179519 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 1 1038 261 282 105 61 chr4 59452480 59452661 -96177459 + LTR37B LTR ERV1 5 193 -275 1 1038 207 0 0 0 chr4 59452694 59452717 -96177403 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 1 1038 658 194 37 0 chr4 59452757 59452891 -96177229 + B1_Mur2 SINE Alu 10 148 -1 1 1038 599 199 295 0 chr4 59453488 59453654 -96176466 + ID_B1 SINE B4 1 215 -9 1 1038 521 287 107 20 chr4 59453676 59453928 -96176192 + B4A SINE B4 1 274 -18 1 1038 745 185 107 5 chr4 59454081 59454277 -96175843 + Lx4B LINE L1 6072 6287 -771 1 1038 252 111 0 0 chr4 59454277 59454322 -96175798 + MER57C2 LTR ERV1 251 295 -139 1 1038 226 274 51 31 chr4 59454474 59454572 -96175548 + MER21B LTR ERV1 750 849 -14 1 1038 519 276 103 127 chr4 59455145 59455436 -96174684 + B4A SINE B4 3 286 -6 1 1038 610 240 130 40 chr4 59455714 59456014 -96174106 + L1MB3 LINE L1 5679 6005 -178 1 1038 423 347 49 35 chr4 59456132 59456416 -96173704 + B4A SINE B4 1 288 -4 1 1038 183 42 0 0 chr4 59456458 59456482 -96173638 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1038 256 160 40 0 chr4 59457066 59457116 -96173004 - ID4 SINE ID -28 55 4 1 1038 214 233 55 0 chr4 59457591 59457664 -96172456 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1038 689 229 134 31 chr4 59457799 59457993 -96172127 + B3 SINE B2 2 215 -1 1 1038 705 134 0 0 chr4 59458299 59458448 -96171672 + (TC)n Simple_repeat Simple_repeat 2 150 0 1 1038 225 0 0 0 chr4 59458448 59458473 -96171647 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1038 240 265 154 41 chr4 59458841 59459010 -96171110 - HAL1 LINE L1 -753 1754 1567 1 1038 492 18 0 0 chr4 59459105 59459162 -96170958 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1038 320 220 190 25 chr4 59459197 59459318 -96170802 + B4 SINE B4 1 141 -151 1 1038 946 121 15 139 chr4 59459402 59459604 -96170516 - URR1B DNA MER1_type -48 177 1 1 1038 224 100 25 0 chr4 59459692 59459732 -96170388 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1038 1823 175 90 6 chr4 59459758 59460103 -96170017 + ORR1D1 LTR MaLR 1 374 0 1 1038 467 255 105 123 chr4 59460110 59460338 -96169782 - MER21B LTR ERV1 -366 497 274 1 1038 272 174 0 0 chr4 59460705 59460751 -96169369 + RSINE1 SINE B4 11 56 -109 1 1038 249 257 29 0 chr4 59461214 59461284 -96168836 + RSINE1 SINE B4 53 124 -41 1 1038 288 0 0 0 chr4 59461366 59461398 -96168722 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1038 247 301 41 0 chr4 59461403 59461476 -96168644 - ID_B1 SINE B4 -15 209 134 1 1038 324 242 66 29 chr4 59461497 59461633 -96168487 - L1MB5 LINE L1 0 6184 6044 1 1038 343 277 8 20 chr4 59461687 59461803 -96168317 - L1MB5 LINE L1 -253 5925 5807 1 1038 384 333 47 30 chr4 59461897 59462129 -96167991 - MER77 LTR ERVL -7 600 365 1 1038 1340 231 125 18 chr4 59462233 59462634 -96167486 - RLTR20C LTR ERVK -90 444 1 1 1038 276 327 43 61 chr4 59462755 59462918 -96167202 - MER77 LTR ERVL -408 199 40 1 1038 393 278 15 23 chr4 59462928 59463077 -96167043 - L1MB5 LINE L1 -376 5802 5656 1 1038 23 0 0 0 chr4 59463084 59463107 -96167013 + AT_rich Low_complexity Low_complexity 1 23 0 1 1038 434 185 3 0 chr4 59463107 59463196 -96166924 - B3 SINE B2 -105 93 4 1 1038 533 271 119 0 chr4 59463289 59463440 -96166680 + B3A SINE B2 2 170 -28 1 1038 1977 132 98 80 chr4 59463840 59464227 -96165893 + ORR1B1 LTR MaLR 1 394 0 1 1038 3016 181 52 43 chr4 59464461 59465072 -96165048 + RMER1B Other Other 363 979 -87 1 1038 2133 148 82 6 chr4 59465083 59465449 -96164671 - ORR1B1 LTR MaLR 0 394 1 1 1038 2808 201 63 79 chr4 59465518 59466329 -96163791 + RLTR40 LTR ERVK 7 804 -13 1 1038 310 256 170 30 chr4 59466788 59466953 -96163167 - ORR1D2 LTR MaLR -140 234 47 1 1038 624 276 6 52 chr4 59467691 59467863 -96162257 + ID_B1 SINE B4 3 166 -58 1 1038 420 143 0 0 chr4 59467869 59467939 -96162181 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 1 1038 237 311 64 28 chr4 59468076 59468185 -96161935 - MLT1L LTR MaLR -188 422 310 1 1038 1973 86 53 0 chr4 59468189 59468492 -96161628 - ORR1A2 LTR MaLR -8 319 1 1 1038 270 253 51 31 chr4 59469132 59469230 -96160890 + RLTR14 LTR ERV1 282 381 -1 1 1038 450 0 0 0 chr4 59469372 59469422 -96160698 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 1 1038 283 208 292 0 chr4 59469422 59469528 -96160592 - B1F2 SINE Alu -12 137 1 1 1038 703 204 26 23 chr4 59469691 59469868 -96160252 - B3 SINE B2 -8 185 1 1 1038 427 188 312 0 chr4 59469930 59470042 -96160078 - B1_Mus2 SINE Alu 0 147 1 1 1038 935 279 29 15 chr4 59470333 59470606 -96159514 + B4A SINE B4 2 278 -14 1 1038 189 0 0 0 chr4 59470690 59470711 -96159409 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1038 391 306 0 18 chr4 59470719 59470832 -96159288 + PB1D10 SINE Alu 5 115 -2 1 1038 1133 266 134 61 chr4 59470820 59471586 -96158534 + Zaphod DNA Tip100 96 917 -3114 1 1038 382 291 27 54 chr4 59471742 59471891 -96158229 - RSINE1 SINE B4 -18 147 3 1 1038 241 346 37 37 chr4 59471957 59472092 -96158028 + MER58B DNA MER1_type 202 336 -5 1 1038 846 281 68 7 chr4 59472101 59472395 -96157725 + Zaphod DNA Tip100 3590 3901 -130 1 1038 202 308 90 23 chr4 59473288 59473421 -96156699 - MIR SINE MIR -36 226 85 1 1038 185 94 31 0 chr4 59473472 59473504 -96156616 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1038 440 231 9 36 chr4 59474388 59474500 -96155620 + PB1D10 SINE Alu 1 109 -8 1 1038 666 307 10 10 chr4 59475721 59475915 -96154205 + B4A SINE B4 2 195 -97 1 1038 425 66 0 16 chr4 59475980 59476042 -96154078 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1038 315 301 0 0 chr4 59476042 59476115 -96154005 + B4A SINE B4 220 292 0 1 1038 185 119 24 0 chr4 59476144 59476186 -96153934 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1038 270 200 110 66 chr4 59476384 59476475 -96153645 - MLT1A0 LTR MaLR -43 322 228 1 1038 616 312 79 26 chr4 59476999 59477302 -96152818 - MER82 DNA MER2_type -28 625 307 1 1038 280 242 118 20 chr4 59477319 59477471 -96152649 - L1M4b LINE L1 -4928 2406 2240 1 1038 389 265 44 22 chr4 59477476 59477611 -96152509 - B1F SINE Alu -11 138 1 1 1038 214 139 0 0 chr4 59477612 59477648 -96152472 - B2_Mm2 SINE B2 -158 37 2 1 1038 258 234 97 74 chr4 59477658 59477833 -96152287 - L1M4b LINE L1 -5108 2226 2048 1 1038 226 285 217 18 chr4 59477853 59478125 -96151995 - L1M4b LINE L1 -5551 1783 1458 1 1038 441 0 0 0 chr4 59478148 59478197 -96151923 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1038 276 277 150 21 chr4 59478315 59478455 -96151665 - L1M4b LINE L1 -5886 1448 1291 1 1038 315 302 19 9 chr4 59478513 59478620 -96151500 - L1M4b LINE L1 -6250 1084 977 1 1038 304 299 22 1 chr4 59479785 59479890 -96150230 + MLT1B LTR MaLR 240 356 -52 1 1038 255 179 53 18 chr4 59479934 59479991 -96150129 + MLT1B LTR MaLR 330 388 -2 1 1038 406 251 142 73 chr4 59480657 59480756 -96149364 + L1MC5 LINE L1 7074 7164 -797 1 1038 310 276 0 50 chr4 59480756 59480836 -96149284 + ID4 SINE ID 2 77 -6 1 1038 406 251 142 73 chr4 59480836 59480955 -96149165 + L1MC5 LINE L1 7165 7307 -654 1 1038 286 303 0 0 chr4 59481346 59481412 -96148708 + ID4 SINE ID 4 69 -14 1 1038 282 229 87 38 chr4 59482697 59482785 -96147335 + B1_Mus1 SINE Alu 1 111 -6 1 1038 882 112 37 7 chr4 59482794 59482929 -96147191 + B1_Mur4 SINE Alu 2 140 -10 1 1038 225 0 0 0 chr4 59482929 59482954 -96147166 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1038 327 244 129 29 chr4 59483311 59483450 -96146670 + MLT1B LTR MaLR 1 153 -237 1 1038 274 252 129 20 chr4 59483450 59483551 -96146569 - PB1D10 SINE Alu 0 117 6 1 1038 336 236 0 53 chr4 59483481 59483557 -96146563 - B4A SINE B4 -136 156 85 1 1038 207 0 0 0 chr4 59484649 59484672 -96145448 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1038 265 316 152 8 chr4 59486545 59486663 -96143457 - B1F1 SINE Alu -12 137 3 1 1038 235 302 0 0 chr4 59487336 59487439 -96142681 + (CATATA)n Simple_repeat Simple_repeat 1 103 0 1 1038 308 328 98 8 chr4 59490450 59490573 -96139547 + MLT1F2 LTR MaLR 1 134 -414 1 1038 236 200 0 0 chr4 59490614 59490654 -96139466 - tRNA-Ala-GCY_ tRNA tRNA -35 40 1 1 1038 318 340 101 7 chr4 59490668 59490816 -96139304 + MLT1F2 LTR MaLR 397 558 -2 1 1038 1186 68 0 7 chr4 59490927 59491075 -96139045 - B1_Mm SINE Alu 0 147 1 1 1038 320 271 84 47 chr4 59491175 59491388 -96138732 + L1MB4 LINE L1 5960 6180 0 1 1038 798 200 200 0 chr4 59491415 59491595 -96138525 + B3 SINE B2 1 216 0 1 1038 221 260 18 0 chr4 59491612 59491679 -96138441 + MIRb SINE MIR 169 236 -26 1 1038 785 156 37 0 chr4 59492088 59492223 -96137897 - B1_Mur4 SINE Alu -8 142 3 1 1038 543 17 0 0 chr4 59492312 59492371 -96137749 + L1Md_F2 LINE L1 5526 5584 -299 1 1038 8383 35 2 1 chr4 59492373 59493361 -96136759 + L1Md_F2 LINE L1 5587 6575 -7 1 1038 902 252 20 0 chr4 59494582 59494784 -96135336 + B3 SINE B2 1 206 -10 1 1038 25 65 0 0 chr4 59494819 59494865 -96135255 + AT_rich Low_complexity Low_complexity 1 46 0 1 1038 21 0 0 0 chr4 59496419 59496440 -96133680 + AT_rich Low_complexity Low_complexity 1 21 0 1 1038 330 330 70 0 chr4 59496440 59496453 -96133667 + B4A SINE B4 71 91 -201 1 1038 765 172 0 0 chr4 59496453 59496575 -96133545 + B1_Mus2 SINE Alu 1 122 -25 1 1038 897 42 8 0 chr4 59496574 59496693 -96133427 + B1_Mus2 SINE Alu 27 146 -1 1 1038 217 132 0 0 chr4 59496695 59496733 -96133387 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1038 299 277 34 67 chr4 59496765 59496854 -96133266 + RSINE1 SINE B4 78 163 -2 1 1038 246 324 15 0 chr4 59496990 59497058 -96133062 + PB1 SINE Alu 1 69 -58 1 1038 212 214 140 18 chr4 59497078 59497135 -96132985 + BC1_Mm scRNA scRNA 18 81 -71 1 1038 316 194 0 0 chr4 59498075 59498142 -96131978 - Lx2 LINE L1 -3 6994 6928 1 1038 350 127 0 0 chr4 59498810 59498865 -96131255 + B1_Mur4 SINE Alu 86 140 -10 1 1038 24 67 0 0 chr4 59499069 59499114 -96131006 + AT_rich Low_complexity Low_complexity 1 45 0 1 1038 287 236 69 0 chr4 59499293 59499365 -96130755 - ID4_ SINE ID -3 80 4 1 1038 379 250 0 0 chr4 59499527 59499619 -96130501 - B1_Mm SINE Alu -47 100 9 1 1038 293 277 24 0 chr4 59499545 59499628 -96130492 - B4A SINE B4 -123 169 85 1 1038 198 0 0 0 chr4 59499934 59499956 -96130164 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1038 378 139 87 150 chr4 59500301 59500428 -96129692 + B1_Mur4 SINE Alu 1 119 -31 1 1038 233 245 19 0 chr4 59501443 59501496 -96128624 + B1_Mur4 SINE Alu 96 149 -1 2 1038 966 86 7 28 chr4 59502209 59502352 -96127768 + B2_Mm2 SINE B2 1 140 -55 3 1038 710 368 36 0 chr4 59502350 59502603 -96127517 + B4 SINE B4 29 290 -2 4 1038 262 288 138 85 chr4 59502960 59503184 -96126936 + L1MC4 LINE L1 7805 8040 -2 5 1038 454 232 81 0 chr4 59503247 59503346 -96126774 - PB1D10 SINE Alu -6 111 5 6 1038 522 278 15 38 chr4 59503548 59503679 -96126441 + B1_Mur4 SINE Alu 2 129 -21 7 1038 504 138 46 0 chr4 59503679 59503788 -96126332 + GA-rich Low_complexity Low_complexity 5 118 0 8 1038 1846 118 46 28 chr4 59503871 59504194 -96125926 - ORR1A4 LTR MaLR 0 329 1 9 1038 506 257 328 17 chr4 59504194 59504383 -96125737 + B4A SINE B4 1 248 -44 1 1038 680 209 8 0 chr4 59504574 59504703 -96125417 - B1_Mus2 SINE Alu -15 132 3 1 1038 478 261 0 40 chr4 59505009 59505133 -96124987 + PB1D9 SINE Alu 1 119 -1 1 1038 476 125 33 22 chr4 59505373 59505463 -96124657 - B1_Mur2 SINE Alu -2 147 57 1 1039 1139 69 0 7 chr4 59506997 59507143 -96122977 + B1_Mus2 SINE Alu 2 146 -1 1 1039 194 57 0 54 chr4 59507143 59507180 -96122940 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1039 202 143 24 0 chr4 59507805 59507847 -96122273 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1039 360 238 23 70 chr4 59508341 59508427 -96121693 + PB1D9 SINE Alu 1 82 -38 1 1039 243 171 2 73 chr4 59508522 59508596 -96121524 - PB1D9 SINE Alu -26 101 25 1 1039 652 272 65 0 chr4 59508591 59508775 -96121345 - B3 SINE B2 -20 196 1 1 1039 749 258 155 74 chr4 59508775 59509070 -96121050 + MTEa LTR MaLR 61 379 0 2 1039 678 179 81 27 chr4 59509151 59509385 -96120735 + ORR1D1 LTR MaLR 1 378 0 2 1039 1043 157 0 28 chr4 59510421 59510598 -96119522 - B2_Mm2 SINE B2 -23 172 1 2 1039 3529 224 106 78 chr4 59510598 59511524 -96118596 + ORR1D1-int LTR MaLR 205 1152 -218 2 1039 3226 32 78 82 chr4 59511524 59512001 -96118119 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1039 3529 224 106 78 chr4 59512001 59512116 -96118004 + ORR1D1-int LTR MaLR 1153 1274 -96 2 1039 830 226 19 19 chr4 59512152 59512314 -96117806 - ORR1D-int LTR MaLR -538 832 671 2 1039 455 217 18 28 chr4 59512295 59512404 -96117716 + ORR1D1-int LTR MaLR 1258 1365 -5 2 1039 711 106 26 0 chr4 59512410 59512523 -96117597 + ORR1D1 LTR MaLR 3 118 -256 2 1039 551 324 0 0 chr4 59512793 59512941 -96117179 - RSINE1 SINE B4 -16 149 2 2 1039 232 296 70 0 chr4 59513112 59513183 -96116937 + ID_B1 SINE B4 102 177 -47 2 1039 1758 172 73 12 chr4 59513136 59513477 -96116643 + ORR1C2 LTR MaLR 20 381 -3 2 1039 360 317 89 0 chr4 59513483 59513584 -96116536 - PB1D7 SINE Alu -10 110 1 2 1039 324 347 13 39 chr4 59513677 59513736 -96116384 + ID SINE ID 27 81 -143 2 1039 609 248 98 0 chr4 59513736 59513869 -96116251 + B1_Mus2 SINE Alu 2 147 0 3 1039 606 208 101 58 chr4 59513962 59514100 -96116020 - B1_Mur3 SINE Alu 0 149 6 3 1039 628 260 1 41 chr4 59514543 59514689 -96115431 + B4 SINE B4 1 132 -92 3 1039 719 185 8 0 chr4 59514687 59514806 -96115314 - B1_Mur4 SINE Alu -18 132 13 3 1039 283 248 8 172 chr4 59514715 59514837 -96115283 - MT2B LTR ERVL -345 256 155 3 1039 3449 39 81 11 chr4 59514942 59515386 -96114734 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1039 231 281 51 20 chr4 59515741 59515839 -96114281 + L1MC3 LINE L1 6729 6829 -956 3 1039 585 57 112 11 chr4 59515903 59515992 -96114128 - L1_Mus2 LINE L1 -151 6415 6318 3 1039 735 223 22 0 chr4 59516289 59516428 -96113692 - B1_Mur2 SINE Alu -7 142 1 3 1039 798 161 35 7 chr4 59516493 59516637 -96113483 - B1_Mur4 SINE Alu 0 150 3 3 1039 264 263 130 13 chr4 59516655 59516732 -96113388 - U6 snRNA snRNA -1 106 21 4 1039 5388 51 36 3 chr4 59516830 59517516 -96112604 - L1_Mus1 LINE L1 0 6567 5859 4 1039 565 165 138 23 chr4 59517941 59518071 -96112049 + B1_Mur4 SINE Alu 6 150 0 4 1039 216 275 70 70 chr4 59518495 59518581 -96111539 + ID_B1 SINE B4 70 155 -69 4 1039 235 231 15 30 chr4 59518581 59518648 -96111472 + GA-rich Low_complexity Low_complexity 2 67 0 4 1039 281 261 71 0 chr4 59518723 59518815 -96111305 - B1F1 SINE Alu -8 112 8 4 1039 255 302 63 0 chr4 59519082 59519208 -96110912 + B1F1 SINE Alu 5 138 -11 4 1039 252 0 0 0 chr4 59519644 59519672 -96110448 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1039 505 228 212 18 chr4 59520506 59520671 -96109449 + B3 SINE B2 1 197 -19 4 1039 401 263 111 45 chr4 59520800 59520999 -96109121 + L1MB2 LINE L1 5944 6155 -16 4 1039 328 255 150 90 chr4 59521001 59521268 -96108852 + B4 SINE B4 2 284 -8 5 1039 1197 21 14 0 chr4 59521299 59521444 -96108676 + B1_Mus1 SINE Alu 2 148 0 5 1039 286 311 0 0 chr4 59522015 59522076 -96108044 + ID4 SINE ID 8 68 -15 5 1039 6877 116 26 19 chr4 59522273 59522549 -96107571 - Lx2 LINE L1 -326 6671 6383 5 1039 2302 89 3 60 chr4 59522549 59522896 -96107224 + ORR1A2 LTR MaLR 1 327 0 5 1039 11136 116 26 19 chr4 59522896 59523443 -96106677 - Lx2 LINE L1 -615 6382 5836 5 1039 706 59 372 7 chr4 59523443 59523580 -96106540 - B2_Mm2 SINE B2 -7 188 2 5 1039 11136 147 31 7 chr4 59523580 59525453 -96104667 - Lx2 LINE L1 -42 5835 3908 5 1039 1780 233 100 43 chr4 59525448 59526012 -96104108 + Lx9 LINE L1 6934 7530 -114 5 1039 306 0 0 0 chr4 59526012 59526046 -96104074 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 1039 1780 233 100 43 chr4 59526046 59526154 -96103966 + Lx9 LINE L1 7531 7644 0 5 1039 790 176 218 0 chr4 59526173 59526338 -96103782 + B3 SINE B2 4 204 -12 5 1039 180 0 0 0 chr4 59526803 59526823 -96103297 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1039 751 159 58 0 chr4 59528171 59528309 -96101811 + B1_Mus1 SINE Alu 2 147 -1 6 1039 23 54 0 0 chr4 59528394 59528431 -96101689 + AT_rich Low_complexity Low_complexity 1 37 0 6 1039 23 0 0 0 chr4 59528617 59528640 -96101480 + AT_rich Low_complexity Low_complexity 1 23 0 6 1039 434 269 68 51 chr4 59528692 59528868 -96101252 - B2_Mm2 SINE B2 -14 181 3 6 1039 613 221 6 76 chr4 59528982 59529139 -96100981 - B1_Mm SINE Alu -1 146 1 6 1039 421 234 54 36 chr4 59530253 59530364 -96099756 + PB1 SINE Alu 11 123 -4 6 1039 1153 166 31 27 chr4 59531127 59531350 -96098770 - URR1B DNA MER1_type 0 225 2 6 1039 912 243 15 10 chr4 59531439 59531643 -96098477 - B3 SINE B2 -10 206 2 6 1039 674 180 15 15 chr4 59531717 59531847 -96098273 + B1_Mur4 SINE Alu 1 130 -20 6 1039 1875 156 42 47 chr4 59533091 59533474 -96096646 - ORR1C2 LTR MaLR -2 382 2 6 1039 564 253 87 40 chr4 59533859 59534032 -96096088 + B3A SINE B2 2 182 -16 7 1039 358 287 110 52 chr4 59534064 59534237 -96095883 - L1ME3A LINE L1 -163 6010 5828 7 1039 1108 51 0 0 chr4 59534490 59534627 -96095493 + B1_Mus2 SINE Alu 1 137 -10 7 1039 207 0 0 0 chr4 59534627 59534650 -96095470 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1039 606 229 49 21 chr4 59535057 59535200 -96094920 - RSINE1 SINE B4 -8 157 11 7 1039 353 295 133 44 chr4 59535251 59535432 -96094688 + BLACKJACK DNA AcHobo 2 198 -2746 7 1039 447 209 13 0 chr4 59535686 59535772 -96094348 - ID_B1 SINE B4 -55 169 87 7 1039 852 281 32 28 chr4 59536451 59536700 -96093420 + MTEa LTR MaLR 1 250 -129 7 1039 611 292 146 42 chr4 59536717 59536956 -96093164 - B4A SINE B4 -25 267 4 7 1039 23 0 0 0 chr4 59537737 59537760 -96092360 + AT_rich Low_complexity Low_complexity 1 23 0 7 1039 291 286 47 19 chr4 59537923 59538030 -96092090 - PB1D10 SINE Alu -4 113 4 8 1039 467 268 99 68 chr4 59538294 59538486 -96091634 - B3A SINE B2 0 198 1 8 1039 547 205 113 16 chr4 59538842 59538966 -96091154 + B1_Mus1 SINE Alu 2 137 -11 8 1039 370 197 34 8 chr4 59539086 59539204 -96090916 + (TA)n Simple_repeat Simple_repeat 1 121 0 8 1039 215 79 0 26 chr4 59539355 59539394 -96090726 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 8 1039 1582 38 0 0 chr4 59540212 59540398 -96089722 + B2_Mm1a SINE B2 1 186 -7 8 1039 242 301 117 15 chr4 59540965 59541171 -96088949 + L1M5 LINE L1 5542 5768 -405 8 1039 369 0 0 0 chr4 59542310 59542351 -96087769 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1039 257 268 95 40 chr4 59542370 59542383 -96087737 + CYRA11_Mm Unknown Y-chromosome 161 230 -387 8 1039 660 164 57 0 chr4 59542383 59542505 -96087615 - URR1B DNA MER1_type 0 225 97 8 1039 257 268 95 40 chr4 59542505 59542518 -96087602 + CYRA11_Mm Unknown Y-chromosome 231 316 -301 8 1039 647 219 28 28 chr4 59542523 59542664 -96087456 - B1_Mus1 SINE Alu -7 141 1 9 1039 656 274 157 61 chr4 59542664 59543031 -96087089 - L1M2 LINE L1 -3289 3556 3161 9 1039 1261 100 0 32 chr4 59543031 59543217 -96086903 - B2_Mm2 SINE B2 -14 181 2 9 1039 656 254 151 46 chr4 59543217 59543549 -96086571 - L1M2 LINE L1 -3685 3160 2786 9 1039 589 269 68 41 chr4 59543601 59543822 -96086298 - L1M2 LINE L1 -4255 2594 2368 9 1039 213 304 0 0 chr4 59543864 59543910 -96086210 - ID4 SINE ID -27 56 11 9 1039 447 284 60 38 chr4 59543927 59544110 -96086010 - L1M2 LINE L1 -4495 2354 2168 9 1039 1812 154 24 87 chr4 59544172 59544486 -96085634 + ORR1B1 LTR MaLR 41 352 -42 9 1039 1135 128 27 5 chr4 59544486 59544674 -96085446 + B2_Mm2 SINE B2 1 192 -3 9 1039 1812 154 24 87 chr4 59544674 59544737 -96085383 + ORR1B1 LTR MaLR 353 394 0 9 1039 281 242 0 0 chr4 59544740 59544802 -96085318 - PB1D7 SINE Alu -57 63 2 9 1039 22 35 0 0 chr4 59545956 59545985 -96084135 + AT_rich Low_complexity Low_complexity 1 29 0 9 1039 429 282 147 39 chr4 59546331 59546604 -96083516 - MER58B DNA MER1_type -57 284 1 9 1039 221 238 0 48 chr4 59546761 59546845 -96083275 + GA-rich Low_complexity Low_complexity 1 80 0 9 1039 1380 68 6 0 chr4 59546950 59547127 -96082993 + B2_Mm1t SINE B2 2 179 -14 1 1039 419 259 20 92 chr4 59547467 59547620 -96082500 + RSINE1 SINE B4 2 143 -22 1 1039 360 328 140 8 chr4 59547852 59548095 -96082025 + L1M5 LINE L1 4618 4892 -1254 1 1039 368 139 14 9 chr4 59548155 59548268 -96081852 - B2_Mm2 SINE B2 -2 193 47 1 1039 1313 85 11 0 chr4 59548300 59548476 -96081644 - B2_Mm1t SINE B2 -14 179 2 1 1039 626 188 31 111 chr4 59548480 59548642 -96081478 - B1_Mur2 SINE Alu 0 149 1 1 1039 1009 209 306 37 chr4 59548669 59549012 -96081108 + MT2A LTR ERVL 49 491 -42 1 1039 237 119 0 0 chr4 59549012 59549054 -96081066 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1039 1009 209 306 37 chr4 59549054 59549092 -96081028 + MT2A LTR ERVL 492 532 -1 1 1039 543 244 118 15 chr4 59549131 59549335 -96080785 + L1MCb LINE L1 502 726 -5319 1 1039 1458 70 0 5 chr4 59549603 59549791 -96080329 + B2_Mm2 SINE B2 1 187 -8 1 1039 311 288 36 36 chr4 59549807 59549890 -96080230 - PB1D9 SINE Alu -37 83 1 1 1039 293 241 55 44 chr4 59549943 59550034 -96080086 + L1MCb LINE L1 1284 1375 -5376 1 1039 265 188 102 34 chr4 59550104 59550192 -96079928 + L1MCb LINE L1 1366 1459 -5292 1 1039 267 152 0 0 chr4 59550242 59550288 -96079832 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1039 329 241 144 58 chr4 59550528 59550841 -96079279 + L1MCb LINE L1 1489 1828 -4923 1 1039 326 295 115 45 chr4 59551009 59551165 -96078955 + L1MCb LINE L1 1910 2076 -4675 1 1039 753 278 11 0 chr4 59551178 59551358 -96078762 + B3A SINE B2 2 183 -15 1 1039 339 283 105 16 chr4 59551406 59551654 -96078466 + L1MCb LINE L1 2190 2459 -4292 1 1039 1281 212 114 36 chr4 59551669 59552001 -96078119 + MTEa LTR MaLR 22 379 0 1 1039 825 145 23 0 chr4 59552069 59552200 -96077920 + B1_Mus2 SINE Alu 5 138 -9 1 1039 354 70 33 71 chr4 59552221 59552290 -96077830 + B1_Mur4 SINE Alu 53 150 0 1 1039 538 289 13 13 chr4 59552313 59552467 -96077653 + RSINE1 SINE B4 2 155 -10 1 1039 461 195 168 18 chr4 59552537 59552655 -96077465 + B1_Mur4 SINE Alu 1 118 -32 1 1039 180 219 0 0 chr4 59552659 59552700 -96077420 + GA-rich Low_complexity Low_complexity 6 46 0 1 1039 192 152 0 0 chr4 59552727 59552760 -96077360 + GA-rich Low_complexity Low_complexity 4 36 0 1 1039 362 209 176 0 chr4 59552787 59552878 -96077242 + B3 SINE B2 2 108 -108 1 1039 1444 134 9 0 chr4 59552880 59553103 -96077017 + URR1B DNA MER1_type 1 225 0 1 1039 768 165 55 0 chr4 59553158 59553285 -96076835 + B1_Mus1 SINE Alu 2 135 -13 1 1039 186 43 0 0 chr4 59553285 59553308 -96076812 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 1 1039 270 253 66 34 chr4 59553640 59553766 -96076354 - MLT1A1 LTR MaLR -22 386 240 1 1039 345 256 54 69 chr4 59553854 59553984 -96076136 + MT2B LTR ERVL 151 278 -323 1 1039 934 42 0 0 chr4 59553889 59554009 -96076111 + B1_Mus2 SINE Alu 26 145 -2 1 1039 381 93 0 0 chr4 59554010 59554064 -96076056 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1039 965 120 23 51 chr4 59554250 59554426 -96075694 + B2_Mm2 SINE B2 2 172 -23 1 1039 426 127 0 0 chr4 59554431 59554502 -96075618 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1039 428 274 168 52 chr4 59554504 59554598 -96075522 + L1ME2 LINE L1 5706 5783 -381 1 1039 1200 35 0 0 chr4 59554598 59554743 -96075377 + B1_Mm SINE Alu 1 145 -2 1 1039 428 274 168 52 chr4 59554743 59555017 -96075103 + L1ME2 LINE L1 5784 6117 -47 1 1039 642 299 86 0 chr4 59555104 59555291 -96074829 - MER58A DNA MER1_type -4 220 18 1 1039 233 239 211 10 chr4 59555785 59555885 -96074235 + PB1 SINE Alu 1 118 -9 1 1039 999 145 6 22 chr4 59555958 59556141 -96073979 + B2_Mm2 SINE B2 2 181 -14 1 1039 885 145 0 7 chr4 59556157 59556296 -96073824 + B1_Mus1 SINE Alu 1 138 -10 1 1039 726 233 39 17 chr4 59556695 59556874 -96073246 + B3 SINE B2 28 210 -6 1 1039 582 286 70 15 chr4 59558059 59558258 -96071862 - B3 SINE B2 -5 211 2 1 1039 180 0 0 0 chr4 59558463 59558483 -96071637 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1039 295 267 197 7 chr4 59558528 59558675 -96071445 + MIR SINE MIR 88 262 0 1 1039 203 288 7 35 chr4 59559063 59559207 -96070913 + A-rich Low_complexity Low_complexity 2 141 0 1 1039 209 195 0 0 chr4 59559632 59559673 -96070447 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1039 237 65 0 0 chr4 59561306 59561337 -96068783 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1039 22 0 0 0 chr4 59561612 59561634 -96068486 + GC_rich Low_complexity Low_complexity 1 22 0 1 1039 22 35 0 0 chr4 59562196 59562225 -96067895 + GC_rich Low_complexity Low_complexity 1 29 0 1 1039 231 244 12 47 chr4 59562298 59562384 -96067736 + C-rich Low_complexity Low_complexity 4 86 0 1 1039 180 0 0 0 chr4 59563271 59563291 -96066829 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1039 292 241 4 0 chr4 59563485 59563547 -96066573 + B1F SINE Alu 63 126 -21 1 1039 238 184 0 0 chr4 59563583 59563621 -96066499 + B1_Mur4 SINE Alu 3 40 -110 1 1039 227 167 56 0 chr4 59563625 59563679 -96066441 + GA-rich Low_complexity Low_complexity 5 61 0 1 1039 598 113 0 40 chr4 59563775 59563876 -96066244 - B1_Mus2 SINE Alu -2 145 49 1 1039 227 242 0 61 chr4 59563825 59563891 -96066229 - RLTR25B LTR ERVK -529 499 438 1 1039 303 377 66 8 chr4 59563916 59564175 -96065945 - L1M5 LINE L1 -303 5821 5548 1 1039 486 201 149 27 chr4 59564178 59564302 -96065818 - B1_Mur3 SINE Alu -7 142 2 1 1039 669 253 60 44 chr4 59564321 59564503 -96065617 - B3A SINE B2 -13 185 1 1 1039 1170 61 0 0 chr4 59564582 59564729 -96065391 + B1_Mm SINE Alu 1 147 0 1 1039 293 172 17 0 chr4 59565029 59565087 -96065033 + B4A SINE B4 173 231 -61 1 1039 854 201 82 0 chr4 59565087 59565281 -96064839 + B3 SINE B2 1 210 -6 1 1039 734 169 34 27 chr4 59565287 59565433 -96064687 + B1_Mus2 SINE Alu 1 147 0 1 1039 513 32 0 0 chr4 59565448 59565511 -96064609 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1039 299 277 62 4 chr4 59566094 59566224 -96063896 + L1MD2 LINE L1 6244 6349 -10 1 1039 333 58 28 4 chr4 59566820 59566881 -96063239 + B1_Mm SINE Alu 57 146 -1 1 1039 972 0 0 0 chr4 59566882 59566990 -96063130 + (GAA)n Simple_repeat Simple_repeat 3 110 0 1 1039 476 16 16 0 chr4 59566992 59567053 -96063067 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1039 785 251 0 6 chr4 59567058 59567226 -96062894 - B3 SINE B2 -25 191 25 1 1039 231 338 179 40 chr4 59567335 59567486 -96062634 - L1MC3 LINE L1 -423 7362 7191 1 1039 216 97 0 0 chr4 59567491 59567522 -96062598 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1039 466 269 144 28 chr4 59567522 59567807 -96062313 - L1MC3 LINE L1 -576 7209 6892 1 1039 277 323 42 0 chr4 59567854 59567950 -96062170 - PB1 SINE Alu -27 100 1 1 1039 443 215 282 8 chr4 59567953 59568084 -96062036 - L1MC3 LINE L1 -923 6862 6696 1 1039 949 248 77 87 chr4 59568175 59568462 -96061658 - B4 SINE B4 0 292 9 1 1039 924 152 0 0 chr4 59570644 59570809 -96059311 + (TG)n Simple_repeat Simple_repeat 1 165 0 1 1039 674 225 0 34 chr4 59570985 59571132 -96058988 - B1_Mur1 SINE Alu -6 143 2 1 1039 330 26 0 0 chr4 59571495 59571534 -96058586 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1039 1156 62 0 0 chr4 59572564 59572708 -96057412 + B1_Mus2 SINE Alu 2 145 -2 1 1039 269 26 26 0 chr4 59572708 59572746 -96057374 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1039 635 288 47 33 chr4 59572836 59573048 -96057072 + B4A SINE B4 1 215 -77 1 1039 216 97 0 0 chr4 59573375 59573406 -96056714 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1039 678 209 7 45 chr4 59573462 59573617 -96056503 + B1_Mur2 SINE Alu 1 149 0 1 1039 192 77 0 0 chr4 59573617 59573643 -96056477 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1 1039 583 264 10 54 chr4 59573648 59573852 -96056268 - B3A SINE B2 -1 197 3 1 1039 536 0 16 0 chr4 59573961 59574025 -96056095 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1 1039 1153 256 62 28 chr4 59574231 59574589 -96055531 + ORR1D2 LTR MaLR 1 370 0 1 1039 221 333 0 0 chr4 59575771 59575840 -96054280 - MER5B DNA MER1_type 0 178 110 1 1039 272 296 11 22 chr4 59576333 59576423 -96053697 + MER5B DNA MER1_type 89 177 -1 1 1039 727 170 0 49 chr4 59576430 59576572 -96053548 + B1_Mur2 SINE Alu 2 136 -13 1 1039 1884 76 109 43 chr4 59576686 59576989 -96053131 + L1_Mus4 LINE L1 6314 6636 0 1 1039 547 286 82 47 chr4 59577068 59577591 -96052529 + L1M2 LINE L1 2509 3051 -3794 1 1039 907 118 32 71 chr4 59577644 59577799 -96052321 + B1_Mur1 SINE Alu 1 149 0 1 1039 312 325 0 0 chr4 59577920 59578037 -96052083 + (CTGGGG)n Simple_repeat Simple_repeat 6 122 0 1 1039 502 101 135 0 chr4 59578038 59578127 -96051993 + B1_Mur3 SINE Alu 42 142 -7 1 1039 1197 274 76 77 chr4 59578211 59578948 -96051172 + L1M2 LINE L1 3101 3836 -3009 1 1039 496 250 136 16 chr4 59578971 59579187 -96050933 + B4 SINE B4 1 243 -49 1 1039 289 284 0 0 chr4 59579187 59579268 -96050852 + L1M2 LINE L1 5755 5835 -1010 1 1039 286 308 16 33 chr4 59579297 59579418 -96050702 + L1M2 LINE L1 6186 6304 -698 1 1039 1746 205 64 33 chr4 59579457 59579912 -96050208 + RMER19C LTR ERVK 141 609 -2 1 1039 259 239 221 3 chr4 59580027 59580103 -96050017 + B1F SINE Alu 13 101 -19 1 1039 1143 62 14 0 chr4 59580104 59580248 -96049872 + B1_Mm SINE Alu 2 147 0 1 1039 352 272 17 26 chr4 59580359 59580476 -96049644 - PB1D10 SINE Alu -1 116 1 1 1039 340 319 58 15 chr4 59580845 59580982 -96049138 + MER20 DNA MER1_type 77 219 0 1 1039 389 329 30 66 chr4 59581259 59581425 -96048695 + RSINE1 SINE B4 2 161 -4 1 1039 252 0 0 0 chr4 59581443 59581471 -96048649 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1039 494 239 0 34 chr4 59581546 59581663 -96048457 + PB1D10 SINE Alu 5 117 0 1 1039 40 37 0 0 chr4 59582099 59582153 -96047967 + AT_rich Low_complexity Low_complexity 1 54 0 1 1039 405 230 52 26 chr4 59582160 59582276 -96047844 - B3A SINE B2 -9 189 71 1 1039 216 302 0 16 chr4 59582302 59582366 -96047754 + PB1D10 SINE Alu 14 76 -41 1 1039 528 258 97 19 chr4 59582606 59582936 -96047184 - L1M4 LINE L1 -500 5678 5317 2 1039 233 274 0 97 chr4 59582937 59583030 -96047090 - PB1 SINE Alu -2 125 42 2 1039 216 130 0 0 chr4 59583046 59583092 -96047028 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2 1039 482 28 14 14 chr4 59583092 59583165 -96046955 - B1_Mur4 SINE Alu 0 150 78 2 1039 727 190 68 21 chr4 59583185 59583389 -96046731 - B3 SINE B2 -2 193 2 2 1039 351 228 108 10 chr4 59583443 59583545 -96046575 - RSINE1 SINE B4 -51 114 3 2 1039 1701 26 0 0 chr4 59583619 59583808 -96046312 + B2_Mm1a SINE B2 2 190 -3 2 1039 528 255 7 28 chr4 59583890 59584035 -96046085 - ID_B1 SINE B4 0 224 83 2 1039 261 103 26 0 chr4 59584036 59584075 -96046045 - L1M4 LINE L1 -943 5203 5164 2 1039 228 155 31 94 chr4 59584160 59584224 -96045896 + B4A SINE B4 158 217 -75 2 1039 414 295 65 120 chr4 59584454 59584602 -96045518 - L1M4 LINE L1 -1015 5131 4999 2 1039 1136 56 21 7 chr4 59584602 59584746 -96045374 - B1_Mm SINE Alu 0 147 2 2 1039 414 295 65 120 chr4 59584746 59584979 -96045141 - L1M4 LINE L1 -1148 4998 4771 2 1039 1144 87 92 0 chr4 59584981 59585154 -96044966 - B2_Mm2 SINE B2 -6 189 1 2 1039 1333 110 11 0 chr4 59585188 59585379 -96044741 - B2_Mm1t SINE B2 0 193 1 2 1039 241 224 0 0 chr4 59585406 59585455 -96044665 - L1MC1 LINE L1 -25 6319 6271 2 1039 755 252 211 23 chr4 59585472 59585780 -96044340 - MTEb LTR MaLR -10 369 4 2 1039 360 319 57 0 chr4 59585781 59585922 -96044198 - L1MC1 LINE L1 -94 6239 6091 2 1039 668 152 0 8 chr4 59586087 59586178 -96043942 + polypyrimidine Low_complexity Low_complexity 37 127 0 2 1039 1179 117 0 0 chr4 59586178 59586358 -96043762 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1039 668 152 0 8 chr4 59586358 59586392 -96043728 + polypyrimidine Low_complexity Low_complexity 4 36 0 2 1039 260 163 0 0 chr4 59586405 59586448 -96043672 + B3 SINE B2 6 48 -168 2 1039 3004 28 29 25 chr4 59586448 59586856 -96043264 + RLTR10C LTR ERVK 1 410 -26 2 1039 262 275 65 21 chr4 59586841 59586934 -96043186 + B3 SINE B2 98 194 -22 2 1039 697 271 79 13 chr4 59587167 59587395 -96042725 - L1MB3 LINE L1 -137 6046 5804 2 1039 830 161 14 0 chr4 59587852 59587995 -96042125 + B1_Mur2 SINE Alu 5 149 0 2 1039 440 266 202 21 chr4 59587996 59588184 -96041936 - L1MB3 LINE L1 -367 5804 5583 2 1039 284 204 0 0 chr4 59588200 59588254 -96041866 + MER5A DNA MER1_type 134 187 -2 2 1039 499 252 200 36 chr4 59588385 59588690 -96041430 - ORR1E LTR MaLR -4 355 1 2 1039 255 209 272 11 chr4 59589199 59589291 -96040829 - PB1D10 SINE Alu 0 117 2 2 1039 338 213 277 0 chr4 59589401 59589495 -96040625 - PB1D9 SINE Alu 0 120 1 2 1039 297 0 0 0 chr4 59589502 59589535 -96040585 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1039 645 255 19 7 chr4 59589541 59589695 -96040425 - B3A SINE B2 -41 157 2 2 1039 948 206 10 25 chr4 59589744 59589948 -96040172 + B3 SINE B2 2 202 -14 2 1039 8051 51 11 24 chr4 59590312 59591433 -96038687 - L1_Mus2 LINE L1 0 6566 5490 2 1039 1222 61 0 0 chr4 59591433 59591581 -96038539 - B1_Mus1 SINE Alu 0 148 1 2 1039 3585 83 2 154 chr4 59591581 59591623 -96038497 - L1_Mm LINE L1 -394 5489 5489 2 1039 4427 111 115 92 chr4 59591623 59592508 -96037612 + RMER17A2 LTR ERVK 1 906 0 2 1039 3585 83 2 154 chr4 59592508 59592657 -96037463 - L1_Mus2 LINE L1 -394 5489 5340 2 1039 217 139 0 77 chr4 59593699 59593738 -96036382 + B3 SINE B2 29 64 -152 2 1039 23 0 0 0 chr4 59594526 59594549 -96035571 + GC_rich Low_complexity Low_complexity 1 23 0 2 1039 474 197 28 83 chr4 59595129 59595273 -96034847 + B1_Mur1 SINE Alu 1 136 -13 2 1039 237 295 101 11 chr4 59595311 59595400 -96034720 - L1MB2 LINE L1 -95 6076 5980 2 1039 758 137 23 0 chr4 59595729 59595860 -96034260 - B1_Mur3 SINE Alu -2 147 14 2 1039 261 250 98 0 chr4 59595871 59595963 -96034157 - L1M5 LINE L1 -302 5822 5722 2 1039 1270 105 10 45 chr4 59596044 59596244 -96033876 + B2_Mm1t SINE B2 1 193 0 2 1039 662 217 0 0 chr4 59596250 59596370 -96033750 - B1_Mur2 SINE Alu -29 120 1 2 1039 235 261 31 0 chr4 59596417 59596482 -96033638 - L1M5 LINE L1 -468 5656 5590 2 1039 343 292 129 18 chr4 59596799 59596970 -96033150 + MER20 DNA MER1_type 25 214 -5 2 1039 251 183 93 53 chr4 59597403 59597478 -96032642 - ID4_ SINE ID -3 80 3 2 1039 251 114 0 22 chr4 59597520 59597565 -96032555 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1039 724 254 49 0 chr4 59598317 59598502 -96031618 - B3A SINE B2 0 198 5 2 1039 277 208 195 0 chr4 59598528 59598605 -96031515 - B1_Mur2 SINE Alu -5 144 53 2 1039 286 239 163 0 chr4 59598609 59598701 -96031419 - B4A SINE B4 -185 107 1 2 1039 207 0 0 0 chr4 59598752 59598775 -96031345 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1039 717 70 24 224 chr4 59598780 59598945 -96031175 - B1_Mus1 SINE Alu -15 133 2 2 1039 359 293 130 0 chr4 59599181 59599304 -96030816 - B1F1 SINE Alu -5 144 6 2 1039 223 347 0 39 chr4 59599357 59599435 -96030685 - ID4 SINE ID -6 77 3 2 1039 709 204 0 50 chr4 59599466 59599605 -96030515 - B1_Mur1 SINE Alu -7 142 11 2 1039 1025 217 151 16 chr4 59600053 59600374 -96029746 - MTD LTR MaLR 0 419 3 2 1039 251 381 17 0 chr4 59600401 59600519 -96029601 - MLT1H1 LTR MaLR -426 129 10 2 1039 859 236 76 86 chr4 59600691 59600992 -96029128 + MTEb LTR MaLR 25 322 -57 2 1039 481 257 53 27 chr4 59601010 59601198 -96028922 - B3A SINE B2 -5 193 1 2 1039 396 227 78 8 chr4 59601528 59601657 -96028463 - MER58D DNA MER1_type -15 371 234 2 1039 1216 47 0 13 chr4 59601723 59601873 -96028247 - B1_Mus1 SINE Alu 0 148 1 2 1039 398 331 13 67 chr4 59601940 59602089 -96028031 - MER58D DNA MER1_type -245 141 1 2 1039 692 255 138 25 chr4 59602206 59602524 -96027596 - ORR1E LTR MaLR -5 354 1 2 1039 276 331 115 0 chr4 59602538 59602668 -96027452 + L1ME3B LINE L1 6090 6234 -6 2 1039 1011 285 87 12 chr4 59602724 59603058 -96027062 + ORR1D2 LTR MaLR 6 364 -6 2 1039 2132 127 60 3 chr4 59603233 59603580 -96026540 - ORR1B2 LTR MaLR 0 367 1 2 1039 447 149 96 0 chr4 59603781 59603875 -96026245 - B1_Mus2 SINE Alu 0 147 45 2 1039 515 276 71 71 chr4 59603894 59604230 -96025890 - L1MB8 LINE L1 -114 6064 5729 2 1039 402 291 104 46 chr4 59604493 59604734 -96025386 + B4A SINE B4 27 281 -11 2 1039 456 292 61 27 chr4 59605303 59605451 -96024669 + RSINE1 SINE B4 3 155 -10 2 1039 688 199 30 0 chr4 59605470 59605601 -96024519 + B1_Mur4 SINE Alu 11 145 -5 2 1039 196 319 0 0 chr4 59605719 59605766 -96024354 + MIR SINE MIR 24 70 -138 2 1039 280 276 0 0 chr4 59605865 59605941 -96024179 - B3 SINE B2 -6 210 135 2 1039 247 272 86 19 chr4 59606267 59606372 -96023748 - Tigger7 DNA MER2_type -43 2448 2337 2 1039 243 103 0 0 chr4 59606672 59606711 -96023409 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1039 273 275 12 0 chr4 59607059 59607139 -96022981 + (TATG)n Simple_repeat Simple_repeat 4 84 0 2 1039 2054 174 46 22 chr4 59607526 59607937 -96022183 - MTC LTR MaLR 0 421 1 2 1039 24 67 0 0 chr4 59608313 59608358 -96021762 + AT_rich Low_complexity Low_complexity 1 45 0 2 1039 707 172 13 46 chr4 59608372 59608524 -96021596 + B1_Mus1 SINE Alu 2 148 0 2 1039 25 31 0 0 chr4 59608553 59608585 -96021535 + AT_rich Low_complexity Low_complexity 1 32 0 2 1039 1212 118 38 0 chr4 59608585 59608740 -96021380 + B2_Mm2 SINE B2 1 155 -40 2 1039 383 38 19 0 chr4 59608740 59608793 -96021327 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1039 1212 118 38 0 chr4 59608793 59608808 -96021312 + B2_Mm2 SINE B2 156 177 -18 2 1039 920 157 0 7 chr4 59608808 59608956 -96021164 + B1_Mur4 SINE Alu 4 150 0 2 1039 1212 118 38 0 chr4 59608956 59608970 -96021150 + B2_Mm2 SINE B2 178 191 -4 2 1039 419 340 7 34 chr4 59609005 59609151 -96020969 + B1F SINE Alu 8 149 0 2 1039 243 234 211 38 chr4 59609296 59609429 -96020691 - MIRb SINE MIR -70 198 43 2 1039 877 175 58 27 chr4 59609854 59610042 -96020078 + Lx4A LINE L1 6865 7058 0 2 1039 417 135 11 1 chr4 59610597 59610689 -96019431 + PB1 SINE Alu 18 83 -44 2 1039 794 192 7 33 chr4 59610781 59610932 -96019188 - B1_Mur2 SINE Alu -1 148 2 2 1039 319 266 131 59 chr4 59610947 59611183 -96018937 - L2a LINE L2 -256 3170 2918 2 1039 463 284 86 23 chr4 59611224 59611480 -96018640 - L2a LINE L2 -667 2752 2481 2 1039 189 352 95 34 chr4 59611666 59611813 -96018307 - L2a LINE L2 -1241 2178 2023 2 1039 882 217 156 0 chr4 59611992 59612172 -96017948 - B3 SINE B2 -8 208 1 2 1039 317 206 68 0 chr4 59612827 59612900 -96017220 - ID4_ SINE ID -3 80 3 2 1039 741 133 15 37 chr4 59613186 59613336 -96016784 - B1_Mur3 SINE Alu -1 148 8 2 1039 215 241 69 0 chr4 59613772 59613830 -96016290 - MIR SINE MIR -60 148 87 2 1039 889 127 22 156 chr4 59614766 59614990 -96015130 - B2_Mm2 SINE B2 -1 194 1 2 1039 935 162 13 20 chr4 59615021 59615172 -96014948 - B1_Mur4 SINE Alu 0 150 1 2 1039 305 201 7 123 chr4 59615390 59615502 -96014618 + B3A SINE B2 105 216 0 2 1039 749 161 17 8 chr4 59615509 59615628 -96014492 + PB1D9 SINE Alu 1 120 0 2 1039 23 0 0 0 chr4 59615635 59615658 -96014462 + AT_rich Low_complexity Low_complexity 1 23 0 2 1039 876 87 6 85 chr4 59615663 59615821 -96014299 + B2_Mm2 SINE B2 2 155 -61 2 1039 351 0 0 0 chr4 59615834 59615873 -96014247 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 1039 22 0 0 0 chr4 59616038 59616060 -96014060 + AT_rich Low_complexity Low_complexity 1 22 0 2 1039 319 269 65 0 chr4 59616319 59616427 -96013693 - PB1D10 SINE Alu -2 115 1 2 1039 361 277 24 0 chr4 59616479 59616562 -96013558 + PB1D10 SINE Alu 21 105 -12 2 1039 1011 174 0 0 chr4 59617103 59617252 -96012868 + B1_Mur2 SINE Alu 1 149 0 2 1039 334 352 12 6 chr4 59617446 59617606 -96012514 + L1M2 LINE L1 4763 4923 -1220 3 1039 404 264 104 0 chr4 59617677 59617783 -96012337 + PB1D10 SINE Alu 1 117 0 3 1039 965 267 57 32 chr4 59617805 59618084 -96012036 + B4A SINE B4 1 286 -6 3 1039 461 274 84 56 chr4 59618150 59618293 -96011827 + B1_Mur1 SINE Alu 3 149 0 3 1039 2764 112 14 28 chr4 59618450 59618809 -96011311 + Lx2A1 LINE L1 6590 6946 -62 3 1039 3269 20 0 0 chr4 59618809 59619155 -96010965 - ORR1A0 LTR MaLR 0 346 1 3 1039 2764 112 14 28 chr4 59619155 59619219 -96010901 + Lx2A1 LINE L1 6947 7007 -1 3 1039 55 62 0 0 chr4 59619230 59619327 -96010793 + AT_rich Low_complexity Low_complexity 1 97 0 3 1039 1266 68 0 0 chr4 59619452 59619599 -96010521 - B1_Mus1 SINE Alu 0 148 2 3 1039 1148 197 15 15 chr4 59619611 59619817 -96010303 - B3 SINE B2 -10 206 1 3 1039 207 0 0 0 chr4 59619834 59619857 -96010263 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 1039 690 214 0 0 chr4 59619860 59619963 -96010157 - PB1D9 SINE Alu -15 105 3 3 1039 1337 157 13 43 chr4 59620065 59620298 -96009822 - URR1A DNA MER1_type 0 226 1 3 1039 216 0 0 0 chr4 59620588 59620612 -96009508 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1039 3552 38 2 2 chr4 59620802 59621198 -96008922 - MTA_Mm LTR MaLR 0 396 1 3 1039 234 0 0 0 chr4 59621390 59621416 -96008704 + (TGG)n Simple_repeat Simple_repeat 1 26 0 3 1039 756 137 40 0 chr4 59621417 59621541 -96008579 + B1_Mus2 SINE Alu 19 147 0 3 1039 245 224 29 15 chr4 59621682 59621750 -96008370 - L1MC1 LINE L1 -20 6313 6245 3 1039 301 293 40 0 chr4 59622104 59622179 -96007941 - B3 SINE B2 -11 205 128 3 1039 202 283 0 0 chr4 59622645 59622691 -96007429 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1039 237 319 43 0 chr4 59622694 59622763 -96007357 - ID4 SINE ID -10 73 2 3 1039 308 320 68 0 chr4 59622837 59622940 -96007180 - RSINE1 SINE B4 -2 163 54 3 1039 297 240 0 0 chr4 59623437 59623591 -96006529 + (CAG)n Simple_repeat Simple_repeat 1 154 0 3 1039 653 210 51 115 chr4 59624121 59624277 -96005843 + B1_Mus2 SINE Alu 1 146 -1 3 1039 638 257 57 0 chr4 59626256 59626396 -96003724 - B1_Mur2 SINE Alu 0 149 2 3 1039 505 244 124 16 chr4 59626474 59626595 -96003525 + B1F SINE Alu 15 148 -1 3 1039 1325 41 0 0 chr4 59626685 59626832 -96003288 + B1_Mus2 SINE Alu 1 147 0 3 1039 216 0 0 0 chr4 59626833 59626857 -96003263 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1039 833 238 108 10 chr4 59626893 59627088 -96003032 + B3 SINE B2 2 215 -1 3 1039 1114 64 50 0 chr4 59627113 59627253 -96002867 + B1_Mus1 SINE Alu 2 148 0 3 1039 238 337 9 37 chr4 59627265 59627373 -96002747 - MIRc SINE MIR -111 157 53 3 1039 361 270 181 7 chr4 59627412 59627550 -96002570 - RSINE1 SINE B4 0 165 4 3 1039 307 245 117 0 chr4 59627599 59627693 -96002427 - ID_B1 SINE B4 -14 210 106 3 1039 291 330 43 43 chr4 59628070 59628187 -96001933 + B1F1 SINE Alu 4 120 0 3 1039 1043 156 201 0 chr4 59628346 59628525 -96001595 - B3 SINE B2 -1 215 1 3 1039 512 203 8 0 chr4 59628676 59628709 -96001411 + polypyrimidine Low_complexity Low_complexity 93 125 0 3 1039 1051 89 6 22 chr4 59628709 59628892 -96001228 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1039 512 203 8 0 chr4 59628892 59628981 -96001139 + polypyrimidine Low_complexity Low_complexity 3 92 0 3 1039 691 149 8 55 chr4 59628984 59629112 -96001008 - B1_Mus1 SINE Alu 0 148 27 3 1039 309 151 0 0 chr4 59629211 59629264 -96000856 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1039 469 216 346 15 chr4 59629264 59629400 -96000720 - B3A SINE B2 -16 182 2 3 1039 560 287 104 52 chr4 59629479 59629747 -96000373 - B4 SINE B4 -10 282 1 3 1039 509 198 34 59 chr4 59629774 59629892 -96000228 - PB1D10 SINE Alu -2 115 1 3 1039 1303 48 0 7 chr4 59630140 59630288 -95999832 - B1_Mm SINE Alu 0 147 1 3 1039 746 180 0 0 chr4 59631015 59631143 -95998977 - B1_Mur4 SINE Alu -21 129 2 3 1039 414 261 11 0 chr4 59631310 59631398 -95998722 - B1F SINE Alu -60 89 1 3 1039 508 321 104 0 chr4 59631414 59631654 -95998466 - L1MEg LINE L1 -1801 4345 4081 3 1039 516 191 129 9 chr4 59631852 59631968 -95998152 - RSINE1 SINE B4 -35 130 1 3 1039 281 271 83 0 chr4 59632064 59632160 -95997960 - L1MB8 LINE L1 -229 5949 5846 3 1039 353 273 35 26 chr4 59632169 59632282 -95997838 + MER73 LTR ERVL 4 117 -527 3 1039 381 246 96 114 chr4 59632307 59632527 -95997593 + MER73 LTR ERVL 93 308 -336 3 1039 837 202 72 57 chr4 59632559 59632705 -95997415 - B3 SINE B2 -5 211 63 3 1039 1334 104 33 0 chr4 59632705 59632888 -95997232 - B2_Mm1t SINE B2 -3 190 2 3 1039 837 202 72 57 chr4 59632888 59632935 -95997185 - B3 SINE B2 -154 62 15 3 1039 364 344 45 8 chr4 59632939 59633071 -95997049 + MER73 LTR ERVL 346 482 -162 3 1039 607 228 167 19 chr4 59633214 59633478 -95996642 - L1MB8 LINE L1 -429 5755 5453 3 1039 2068 142 6 0 chr4 59633495 59633812 -95996308 - ORR1A2 LTR MaLR -8 319 1 3 1039 10688 139 82 19 chr4 59633812 59635659 -95994461 - ORR1A2-int LTR MaLR 0 1963 2 3 1039 2244 127 29 0 chr4 59635660 59635975 -95994145 - ORR1A2 LTR MaLR 0 327 4 3 1039 266 314 95 0 chr4 59636010 59636179 -95993941 - L1MEg LINE L1 -5287 955 771 3 1039 21 0 0 0 chr4 59636201 59636222 -95993898 + AT_rich Low_complexity Low_complexity 1 21 0 3 1039 2764 152 14 5 chr4 59636431 59636847 -95993273 - MTC LTR MaLR 0 421 2 3 1039 240 189 122 0 chr4 59637000 59637074 -95993046 - L1MB2 LINE L1 -5 6166 6084 3 1039 478 117 340 0 chr4 59637096 59637199 -95992921 - B1_Mus1 SINE Alu -5 143 6 3 1039 205 275 143 11 chr4 59637350 59637463 -95992657 + MIRc SINE MIR 3 134 -134 3 1039 902 222 75 15 chr4 59637529 59637730 -95992390 + B3 SINE B2 1 213 -3 3 129 209 337 31 42 chr4 59637749 59637845 -95992275 + MIR SINE MIR 132 226 -36 3 1040 725 274 144 14 chr4 59637990 59638119 -95992001 - RMER5 LTR ERV1 0 534 380 3 1040 207 0 0 0 chr4 59638119 59638142 -95991978 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 1040 725 274 144 14 chr4 59638142 59638304 -95991816 - RMER5 LTR ERV1 -155 379 205 3 1040 360 204 129 0 chr4 59638378 59638471 -95991649 - B3 SINE B2 -92 124 20 3 1040 236 91 0 22 chr4 59639034 59639079 -95991041 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 3 1040 23 68 0 0 chr4 59639089 59639133 -95990987 + GC_rich Low_complexity Low_complexity 1 44 0 3 1040 258 32 0 0 chr4 59639894 59639925 -95990195 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1040 27 0 0 0 chr4 59640013 59640040 -95990080 + AT_rich Low_complexity Low_complexity 1 27 0 3 1040 258 192 0 0 chr4 59641511 59641563 -95988557 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1040 180 0 0 0 chr4 59641701 59641721 -95988399 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1040 299 172 0 15 chr4 59643277 59643342 -95986778 + B1_Mm SINE Alu 80 143 -4 3 1040 514 263 188 50 chr4 59643446 59643762 -95986358 - MLT1B LTR MaLR -30 360 1 3 1040 963 201 84 20 chr4 59643833 59644036 -95986084 - B3 SINE B2 0 216 1 3 1040 281 47 23 0 chr4 59644103 59644146 -95985974 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1040 831 301 33 16 chr4 59644174 59644417 -95985703 - B4A SINE B4 -4 288 42 3 1040 355 200 15 0 chr4 59645417 59645482 -95984638 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 3 1040 509 208 21 0 chr4 59646287 59646383 -95983737 - B1_Mur2 SINE Alu 0 149 52 3 1040 252 244 186 0 chr4 59646501 59646587 -95983533 - RSINE1 SINE B4 -11 154 53 3 1040 594 0 0 0 chr4 59646622 59646688 -95983432 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 3 1040 1198 67 12 12 chr4 59646689 59646856 -95983264 - B2_Mm2 SINE B2 -27 168 2 3 1040 183 80 0 0 chr4 59646874 59646899 -95983221 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 1040 829 230 6 11 chr4 59646899 59647075 -95983045 - B3A SINE B2 -23 175 1 3 1040 283 237 24 73 chr4 59647114 59647196 -95982924 - RSINE1 SINE B4 0 165 88 3 1040 221 189 164 36 chr4 59647184 59647239 -95982881 - B1F2 SINE Alu -87 62 1 3 1040 607 245 149 77 chr4 59647795 59648144 -95981976 + L1M5 LINE L1 5428 5801 -372 3 1040 232 324 13 13 chr4 59648185 59648260 -95981860 + MLT1H2 LTR MaLR 100 174 -315 3 1040 535 217 115 39 chr4 59648671 59648853 -95981267 + ORR1E LTR MaLR 1 196 -163 3 1040 243 0 0 0 chr4 59648866 59648893 -95981227 + (CTCTG)n Simple_repeat Simple_repeat 1 27 0 3 1040 335 169 198 35 chr4 59648898 59648984 -95981136 + ORR1E LTR MaLR 264 363 -16 3 1040 306 0 0 0 chr4 59649149 59649183 -95980937 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1040 422 220 44 35 chr4 59650038 59650151 -95979969 + PB1D9 SINE Alu 1 114 -6 3 1040 456 218 112 75 chr4 59650257 59650391 -95979729 - B4 SINE B4 -7 285 147 3 1040 1697 169 112 6 chr4 59650391 59650730 -95979390 + ORR1C1 LTR MaLR 4 378 0 3 1040 325 250 115 0 chr4 59650730 59650826 -95979294 + ORR1C1-int LTR MaLR 1 107 -1263 3 1040 283 91 236 0 chr4 59650832 59650887 -95979233 + ORR1C2 LTR MaLR 317 384 0 3 1040 698 148 0 15 chr4 59650916 59651046 -95979074 + CT-rich Low_complexity Low_complexity 4 131 0 3 1040 335 200 61 12 chr4 59651051 59651132 -95978988 - PB1D9 SINE Alu -1 119 39 3 1040 393 202 11 45 chr4 59651136 59651224 -95978896 - B4 SINE B4 -206 86 2 3 1040 259 145 172 31 chr4 59651392 59651456 -95978664 + ID4_ SINE ID 5 77 -6 3 1040 360 111 0 0 chr4 59651456 59651510 -95978610 + (CCCA)n Simple_repeat Simple_repeat 3 56 0 3 1040 894 171 0 14 chr4 59651599 59651741 -95978379 - B1_Mur4 SINE Alu -9 141 2 3 1040 253 235 33 56 chr4 59652181 59652271 -95977849 - RMER10A LTR ERVL -337 105 18 3 1040 306 320 62 0 chr4 59652521 59652618 -95977502 - PB1D10 SINE Alu -13 104 2 3 1040 278 267 107 0 chr4 59652620 59652695 -95977425 + MER58B DNA MER1_type 224 306 -35 3 1040 249 271 200 24 chr4 59652701 59652871 -95977249 - L2a LINE L2 -33 3393 3194 3 1040 291 211 146 101 chr4 59652872 59653030 -95977090 + MT2B LTR ERVL 103 267 -334 3 1040 684 208 39 0 chr4 59652931 59653061 -95977059 + B1_Mur2 SINE Alu 15 149 0 4 1040 23 33 0 0 chr4 59654042 59654072 -95976048 + AT_rich Low_complexity Low_complexity 1 30 0 4 1040 899 136 0 0 chr4 59654107 59654239 -95975881 - B1_Mus2 SINE Alu -15 132 1 4 1040 402 256 59 8 chr4 59654136 59654254 -95975866 - B4A SINE B4 -98 194 71 4 1040 351 275 85 72 chr4 59654137 59654360 -95975760 - MT2B LTR ERVL -344 257 32 4 1040 243 293 139 82 chr4 59654245 59654453 -95975667 - B4 SINE B4 -41 251 32 4 1040 234 246 138 0 chr4 59654624 59654689 -95975431 - MIR3 SINE MIR -31 177 104 4 1040 367 286 126 42 chr4 59654887 59655077 -95975043 + MIR SINE MIR 27 232 -30 4 1040 996 214 25 5 chr4 59655189 59655386 -95974734 + B3 SINE B2 16 216 0 4 1040 580 263 33 81 chr4 59657314 59657333 -95972787 - ID_B1 SINE B4 -9 215 178 4 1040 641 191 17 9 chr4 59657333 59657449 -95972671 - B1F SINE Alu -32 117 1 4 1040 580 263 33 81 chr4 59657449 59657525 -95972595 - ID_B1 SINE B4 -9 177 15 4 1040 28 61 0 0 chr4 59658505 59658554 -95971566 + AT_rich Low_complexity Low_complexity 1 49 0 4 1040 444 266 142 34 chr4 59658581 59658729 -95971391 - RSINE1 SINE B4 -1 164 1 4 1040 539 139 12 0 chr4 59658745 59658831 -95971289 + B1_Mur4 SINE Alu 3 89 -61 4 1040 206 32 0 31 chr4 59658831 59658863 -95971257 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 1040 234 225 0 0 chr4 59658875 59658915 -95971205 + polypyrimidine Low_complexity Low_complexity 2 41 0 4 1040 4092 65 87 13 chr4 59659514 59660103 -95970017 + L1Md_F2 LINE L1 5999 6582 0 4 1040 347 283 15 86 chr4 59660234 59660431 -95969689 - Lx8 LINE L1 -3 7470 7288 4 1040 378 0 0 0 chr4 59660579 59660621 -95969499 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1040 324 258 113 95 chr4 59660697 59660980 -95969140 - B4 SINE B4 -2 290 3 4 1040 698 239 124 5 chr4 59661457 59661650 -95968470 - B3 SINE B2 0 216 1 4 1040 245 308 177 13 chr4 59661971 59662129 -95967991 + MER5A DNA MER1_type 6 189 0 4 1040 189 0 0 0 chr4 59662432 59662453 -95967667 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1040 379 244 36 24 chr4 59662520 59662604 -95967516 - PB1D10 SINE Alu -21 96 12 4 1040 319 308 27 36 chr4 59662521 59662632 -95967488 - ID_B1 SINE B4 -48 176 67 4 1040 319 290 109 27 chr4 59663042 59663152 -95966968 - MLT2B4 LTR ERVL -41 526 408 4 1040 473 242 121 0 chr4 59663296 59663428 -95966692 - MLT2B4 LTR ERVL -408 148 1 4 1040 311 277 69 0 chr4 59663462 59663563 -95966557 + L1MEc LINE L1 129 236 -6164 4 1040 2064 138 108 14 chr4 59663647 59664007 -95966113 - ORR1B1 LTR MaLR 0 394 1 4 1040 764 254 172 78 chr4 59664020 59664210 -95965910 + L1M4 LINE L1 4211 4416 -1730 4 1040 1210 76 7 0 chr4 59664210 59664355 -95965765 - B1_Mus2 SINE Alu 0 147 2 4 1040 764 254 172 78 chr4 59664355 59664612 -95965508 + L1M4 LINE L1 4417 4700 -1446 4 1040 351 262 12 12 chr4 59664614 59664695 -95965425 + ID_B1 SINE B4 78 158 -66 4 1040 375 209 35 18 chr4 59664623 59664744 -95965376 + PB1D9 SINE Alu 7 136 -13 4 1040 691 278 67 0 chr4 59664754 59664977 -95965143 + L1M4 LINE L1 4888 5125 -1021 4 1040 365 313 77 21 chr4 59665048 59665283 -95964837 + L1MEc LINE L1 2738 2985 -3334 4 1040 314 284 43 43 chr4 59665372 59665464 -95964656 + B1F1 SINE Alu 7 98 -51 4 1040 246 57 0 0 chr4 59665492 59665527 -95964593 + L1MC LINE L1 2923 2957 -3189 4 1040 309 274 72 68 chr4 59665606 59665841 -95964279 + L1M2 LINE L1 2930 3165 -2978 4 1040 528 290 20 15 chr4 59665853 59666014 -95964106 + B3A SINE B2 15 167 -49 4 1040 554 292 66 40 chr4 59666030 59666410 -95963710 - RLTR12B LTR ERVK -68 291 4 4 1040 270 262 0 116 chr4 59666416 59666485 -95963635 + B3 SINE B2 129 189 -27 4 1040 240 277 30 83 chr4 59666491 59666660 -95963460 + L1MEc LINE L1 3377 3536 -2783 4 1040 724 221 32 0 chr4 59666710 59666864 -95963256 + L1MEc LINE L1 3643 3801 -2518 4 1040 307 260 62 38 chr4 59666965 59667045 -95963075 - ID4_ SINE ID 0 83 2 4 1040 1708 26 0 0 chr4 59667078 59667271 -95962849 - B2_Mm1a SINE B2 0 193 1 4 1040 538 310 104 45 chr4 59667295 59668146 -95961974 + L1MEc LINE L1 3919 4846 -1473 4 1040 450 248 266 31 chr4 59669016 59669245 -95960875 + B4A SINE B4 3 285 -7 4 1040 360 94 0 0 chr4 59669263 59669316 -95960804 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1040 462 236 9 0 chr4 59669726 59669832 -95960288 + B1_Mm SINE Alu 41 147 0 4 1040 2659 198 20 6 chr4 59671001 59671505 -95958615 + RLTR18B LTR ERVK 2 512 0 4 1040 504 296 112 48 chr4 59671781 59671969 -95958151 - ID_B1 SINE B4 -23 201 2 4 1040 211 276 17 0 chr4 59672056 59672114 -95958006 - BC1_Mm scRNA scRNA -86 66 8 4 1040 1137 62 0 14 chr4 59672200 59672347 -95957773 + B1_Mus2 SINE Alu 2 146 -1 4 1040 277 43 21 21 chr4 59672348 59672396 -95957724 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1040 865 221 70 5 chr4 59672597 59672784 -95957336 - B3 SINE B2 -6 210 12 4 1040 316 197 0 0 chr4 59673789 59673855 -95956265 - MLT1A1 LTR MaLR -22 386 321 4 1040 211 405 70 19 chr4 59674180 59674336 -95955784 + L2a LINE L2 3004 3167 -259 4 1040 2567 162 67 8 chr4 59674374 59674737 -95955383 + Lx LINE L1 6147 6518 -136 4 1040 225 0 0 0 chr4 59674737 59674762 -95955358 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 4 1040 2567 162 67 8 chr4 59674762 59674878 -95955242 + Lx LINE L1 6519 6652 -2 4 1040 780 178 145 5 chr4 59674985 59675171 -95954949 - B3 SINE B2 -4 212 1 4 1040 297 303 8 16 chr4 59675299 59675423 -95954697 - MER82 DNA MER2_type -153 500 378 4 1040 584 139 17 0 chr4 59675416 59675531 -95954589 - B1_Mur2 SINE Alu 0 120 1 4 1040 721 238 170 7 chr4 59675533 59675816 -95954304 - MER82 DNA MER2_type -251 402 74 4 1040 432 0 0 0 chr4 59676306 59676354 -95953766 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1040 528 205 0 66 chr4 59677094 59677230 -95952890 - ORR1D2 LTR MaLR 0 370 244 4 1040 525 32 0 0 chr4 59677238 59677301 -95952819 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1040 327 284 23 0 chr4 59677305 59677393 -95952727 - ORR1D2 LTR MaLR -182 177 88 4 1040 531 235 8 40 chr4 59677393 59677576 -95952544 - ORR1D1 LTR MaLR 0 379 201 4 1040 473 121 12 0 chr4 59677576 59677659 -95952461 + (GGGAGA)n Simple_repeat Simple_repeat 5 88 0 4 1040 882 186 6 17 chr4 59677659 59677834 -95952286 - ORR1D1 LTR MaLR -193 181 9 4 1040 277 312 94 0 chr4 59677978 59678116 -95952004 + RMER15 LTR ERVL 422 572 -3 4 1040 286 218 161 47 chr4 59678116 59678265 -95951855 - L1MC3 LINE L1 -800 6985 6820 4 1040 830 184 14 0 chr4 59678380 59678521 -95951599 + B1_Mus2 SINE Alu 5 147 0 4 1040 2882 230 236 12 chr4 59678613 59679453 -95950667 - RMER1A Other Other -2 1028 1 4 1040 207 0 0 0 chr4 59679981 59680004 -95950116 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1040 198 0 0 0 chr4 59680538 59680560 -95949560 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1040 835 79 0 26 chr4 59680699 59680854 -95949266 - RMER17B LTR ERVK -495 463 313 4 1040 441 130 43 0 chr4 59681752 59681821 -95948299 - RSINE1 SINE B4 -74 91 20 4 1040 423 319 0 22 chr4 59681822 59681960 -95948160 - ID_B1 SINE B4 -1 223 89 4 1040 588 298 12 58 chr4 59682277 59682448 -95947672 - RSINE1 SINE B4 0 165 3 4 1040 289 211 0 43 chr4 59682459 59682553 -95947567 + CT-rich Low_complexity Low_complexity 1 90 0 4 1040 471 250 117 0 chr4 59682580 59682700 -95947420 - RSINE1 SINE B4 -29 136 3 4 1040 571 264 39 0 chr4 59682740 59682869 -95947251 + B1_Mur1 SINE Alu 10 143 -6 4 1040 243 61 0 0 chr4 59682870 59682903 -95947217 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1040 415 260 67 0 chr4 59682903 59683007 -95947113 - B3A SINE B2 -29 169 59 4 1040 351 0 0 0 chr4 59683288 59683327 -95946793 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1040 378 0 0 0 chr4 59683328 59683370 -95946750 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1040 317 184 34 146 chr4 59684427 59684516 -95945604 + B1_Mus1 SINE Alu 10 88 -60 4 1040 274 258 31 41 chr4 59685071 59685168 -95944952 + L1MB8 LINE L1 5577 5672 -506 4 1040 311 340 40 0 chr4 59685179 59685279 -95944841 + RSINE1 SINE B4 5 108 -57 4 1040 399 89 0 0 chr4 59685281 59685337 -95944783 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1040 336 200 91 26 chr4 59685354 59685431 -95944689 + ID SINE ID 3 84 -140 4 1040 343 278 106 96 chr4 59685433 59685486 -95944634 + L1MB8 LINE L1 5683 5722 -456 4 1040 964 224 25 15 chr4 59685486 59685690 -95944430 + B3 SINE B2 5 210 -6 4 1040 343 278 106 96 chr4 59685690 59685835 -95944285 + L1MB8 LINE L1 5723 5883 -295 4 1040 331 307 8 34 chr4 59685986 59686104 -95944016 - PB1D10 SINE Alu -2 115 1 4 1040 817 255 66 39 chr4 59686326 59686583 -95943537 + B4A SINE B4 21 284 -8 4 1040 883 217 120 4 chr4 59686781 59687040 -95943080 - MLT2B5 LTR ERVL -66 535 247 4 1040 230 100 49 24 chr4 59688147 59688188 -95941932 - L1ME3 LINE L1 -9 6153 6112 4 1040 231 267 68 19 chr4 59688238 59688341 -95941779 - L1ME2 LINE L1 -164 6000 5893 4 1040 28 79 0 0 chr4 59688576 59688639 -95941481 + AT_rich Low_complexity Low_complexity 1 63 0 4 1040 246 128 0 0 chr4 59689705 59689744 -95940376 + (CACG)n Simple_repeat Simple_repeat 1 39 0 4 1040 568 297 62 29 chr4 59689756 59689999 -95940121 - L1MA4 LINE L1 -362 5938 5688 4 1040 573 171 77 0 chr4 59690540 59690657 -95939463 - B1_Mus1 SINE Alu -20 128 3 4 1040 2246 48 22 0 chr4 59691737 59692048 -95938072 + RLTR10 LTR ERVK 1 318 -72 4 1040 247 150 0 32 chr4 59692084 59692146 -95937974 + RLTR10 LTR ERVK 259 318 -72 4 1040 871 84 8 0 chr4 59692169 59692300 -95937820 + RLTR10 LTR ERVK 259 390 0 4 1040 243 355 0 0 chr4 59692905 59692981 -95937139 + B3A SINE B2 107 182 -16 4 1040 378 147 0 0 chr4 59692992 59693060 -95937060 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 4 1040 663 259 28 17 chr4 59693237 59693414 -95936706 + B3A SINE B2 2 180 -18 4 1040 911 150 188 6 chr4 59693984 59694165 -95935955 + B3 SINE B2 2 215 -1 4 1040 618 168 62 31 chr4 59694178 59694307 -95935813 + B1_Mur3 SINE Alu 9 141 -8 4 1040 240 183 129 0 chr4 59694448 59694541 -95935579 + RMER10A LTR ERVL 338 442 0 5 1040 696 64 0 0 chr4 59694784 59694878 -95935242 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 1040 750 245 82 12 chr4 59694914 59695170 -95934950 - B4A SINE B4 -17 275 2 5 1040 2028 244 164 29 chr4 59696587 59697348 -95932772 - Lx9 LINE L1 -43 7601 6738 5 1040 376 254 54 34 chr4 59697350 59697497 -95932623 - B3 SINE B2 -22 194 45 5 1040 1159 75 0 0 chr4 59697547 59697693 -95932427 + B1_Mus2 SINE Alu 2 147 0 5 1040 333 19 0 53 chr4 59697693 59697750 -95932370 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 5 1040 694 165 0 0 chr4 59698192 59698313 -95931807 - B1_Mus1 SINE Alu -23 125 5 5 1040 367 272 17 17 chr4 59698321 59698437 -95931683 - PB1D10 SINE Alu -1 116 1 5 1040 389 236 126 9 chr4 59698822 59698933 -95931187 + B4A SINE B4 2 125 -167 5 1040 285 291 51 162 chr4 59698933 59699056 -95931064 + B3 SINE B2 2 209 -7 5 1040 226 288 0 17 chr4 59699051 59699111 -95931009 + B4A SINE B4 216 274 -18 5 1040 206 234 0 45 chr4 59699113 59699180 -95930940 + (CATA)n Simple_repeat Simple_repeat 1 64 0 5 1040 615 262 46 6 chr4 59700541 59700714 -95929406 + B3A SINE B2 3 182 -16 5 1040 522 246 0 0 chr4 59700737 59700904 -95929216 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 1040 240 183 72 12 chr4 59701139 59701222 -95928898 + (TTAA)n Simple_repeat Simple_repeat 4 91 0 5 1040 772 194 0 20 chr4 59701264 59701411 -95928709 + B1_Mur3 SINE Alu 1 144 -5 5 1040 933 93 0 28 chr4 59701440 59701583 -95928537 + B1_Mus2 SINE Alu 9 147 0 5 1040 1263 82 0 67 chr4 59701763 59701958 -95928162 - B2_Mm2 SINE B2 -13 182 1 5 1040 309 100 0 0 chr4 59704578 59704628 -95925492 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1040 411 214 248 9 chr4 59705356 59705469 -95924651 - B3 SINE B2 -19 197 58 5 1040 612 293 127 56 chr4 59705598 59705992 -95924128 - L1MB8 LINE L1 -280 5898 5477 5 1040 703 172 0 45 chr4 59706002 59706136 -95923984 + B1_Mur1 SINE Alu 22 149 0 5 1040 275 229 72 128 chr4 59706156 59706336 -95923784 - L1MB8 LINE L1 -751 5423 5254 5 1040 383 200 75 0 chr4 59706455 59706535 -95923585 - ID_B1 SINE B4 -63 161 76 5 1040 31 0 0 0 chr4 59706721 59706752 -95923368 + AT_rich Low_complexity Low_complexity 1 31 0 5 1040 203 61 30 0 chr4 59706831 59706864 -95923256 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1040 237 182 0 0 chr4 59707200 59707255 -95922865 + CT-rich Low_complexity Low_complexity 3 57 0 5 1040 900 114 14 0 chr4 59708142 59708282 -95921838 - B1_Mur4 SINE Alu -2 148 7 5 1040 24 32 0 0 chr4 59708971 59709002 -95921118 + AT_rich Low_complexity Low_complexity 1 31 0 5 1040 2293 208 73 7 chr4 59709066 59709617 -95920503 - RLTR40 LTR ERVK 0 817 231 5 1040 434 238 142 8 chr4 59709580 59709707 -95920413 + B1_Mur3 SINE Alu 6 149 0 5 1040 910 160 121 34 chr4 59709709 59709916 -95920204 - RLTR40 LTR ERVK -570 247 23 5 1040 22 0 0 0 chr4 59710259 59710281 -95919839 + AT_rich Low_complexity Low_complexity 1 22 0 5 1040 1217 35 0 14 chr4 59710472 59710618 -95919502 - B1_Mus1 SINE Alu 0 148 5 5 1040 207 0 0 0 chr4 59711517 59711540 -95918580 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1040 233 260 0 0 chr4 59711673 59711723 -95918397 + T-rich Low_complexity Low_complexity 1 50 0 5 1040 24 0 0 0 chr4 59712480 59712504 -95917616 + AT_rich Low_complexity Low_complexity 1 24 0 5 1040 352 183 42 0 chr4 59712511 59712582 -95917538 + B3A SINE B2 1 74 -124 5 1040 241 214 80 80 chr4 59715149 59715244 -95914876 + PB1D10 SINE Alu 1 96 -21 5 1040 3075 73 10 0 chr4 59715244 59715639 -95914481 - MTB LTR MaLR -1 399 1 5 1040 241 214 80 80 chr4 59715639 59715655 -95914465 + PB1D10 SINE Alu 97 112 -5 5 1040 355 179 23 23 chr4 59715989 59716075 -95914045 - PB1D9 SINE Alu -23 97 12 5 1040 1143 216 10 0 chr4 59716182 59716390 -95913730 - B3 SINE B2 -5 211 2 5 1040 433 132 163 11 chr4 59716454 59716546 -95913574 - B1_Mur2 SINE Alu -5 144 39 5 1040 233 277 23 46 chr4 59716788 59716875 -95913245 - L4 LINE RTE -1596 433 349 5 1040 873 163 116 40 chr4 59717412 59717610 -95912510 - B3 SINE B2 -2 214 2 5 1040 189 195 0 0 chr4 59717628 59717669 -95912451 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1040 428 301 71 51 chr4 59717692 59718042 -95912078 - L1M4 LINE L1 -439 5739 5383 5 1040 580 198 9 0 chr4 59719303 59719409 -95910711 - B1F2 SINE Alu -8 141 35 5 1040 320 334 36 11 chr4 59719553 59719726 -95910394 - MIR SINE MIR -67 201 18 5 1040 450 281 73 15 chr4 59720034 59720171 -95909949 + RSINE1 SINE B4 4 148 -17 5 1040 1423 89 16 0 chr4 59720218 59720409 -95909711 - B2_Mm2 SINE B2 0 195 2 5 1040 282 154 0 0 chr4 59721032 59721084 -95909036 - RMER1B Other Other -23 1043 992 5 1040 3052 148 8 41 chr4 59721086 59721599 -95908521 - RMER1B Other Other -182 884 389 5 1040 3254 161 110 149 chr4 59722009 59722948 -95907172 - RMER19B LTR ERVK 0 902 1 5 1040 1166 68 0 7 chr4 59723131 59723142 -95906978 - B1_Mm SINE Alu 0 147 137 5 1040 198 0 0 0 chr4 59723142 59723164 -95906956 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1040 1166 68 0 7 chr4 59723164 59723300 -95906820 - B1_Mm SINE Alu -11 136 1 5 1040 1536 58 16 0 chr4 59723301 59723492 -95906628 - B2_Mm2 SINE B2 0 195 2 5 1040 677 249 73 23 chr4 59725154 59725331 -95904789 + B3A SINE B2 1 186 -12 5 1040 183 42 0 0 chr4 59725837 59725861 -95904259 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1040 355 240 130 0 chr4 59727099 59727199 -95902921 - PB1D10 SINE Alu -3 114 2 5 1040 954 282 26 0 chr4 59728999 59729226 -95900894 + B4A SINE B4 1 233 -59 5 1040 180 0 0 0 chr4 59729411 59729431 -95900689 + (CAGC)n Simple_repeat Simple_repeat 3 22 0 5 1040 396 0 0 0 chr4 59730237 59730281 -95899839 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1040 823 156 0 0 chr4 59731136 59731277 -95898843 - B1_Mur4 SINE Alu -1 149 9 5 1040 339 204 10 120 chr4 59731199 59731299 -95898821 - MT2B LTR ERVL -361 240 152 5 1040 22 0 0 0 chr4 59733948 59733970 -95896150 + AT_rich Low_complexity Low_complexity 1 22 0 5 1040 288 93 93 0 chr4 59735941 59735984 -95894136 + RLTR44-int LTR ERVK 257 303 -2509 5 1040 286 304 32 11 chr4 59736242 59736335 -95893785 - PB1D10 SINE Alu 0 117 23 5 1040 311 143 0 0 chr4 59736954 59737003 -95893117 + RLTR44-int LTR ERVK 778 826 -1986 5 1040 689 233 7 7 chr4 59738129 59738276 -95891844 - B1_Mur1 SINE Alu 0 149 3 5 1040 21 0 0 0 chr4 59739109 59739130 -95890990 + AT_rich Low_complexity Low_complexity 1 21 0 5 1040 209 72 0 67 chr4 59739265 59739310 -95890810 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1040 444 223 42 51 chr4 59739857 59739933 -95890187 + B3A SINE B2 1 81 -117 5 1040 234 0 0 0 chr4 59739933 59739959 -95890161 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1040 444 223 42 51 chr4 59739959 59740000 -95890120 + B3A SINE B2 82 116 -82 5 1040 1276 141 0 14 chr4 59740607 59740815 -95889305 + URR1A DNA MER1_type 1 205 -21 5 1040 183 42 0 0 chr4 59741645 59741669 -95888451 + (G)n Simple_repeat Simple_repeat 1 24 0 5 1040 345 293 71 44 chr4 59742642 59742661 -95887459 - B4A SINE B4 -8 284 267 5 1040 359 21 21 0 chr4 59742661 59742709 -95887411 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1040 345 293 71 44 chr4 59742709 59742871 -95887249 - B4A SINE B4 -26 266 98 5 1040 249 340 45 27 chr4 59742908 59743020 -95887100 - ID_B1 SINE B4 -1 223 110 5 1040 431 35 0 17 chr4 59743020 59743078 -95887042 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1040 931 180 41 10 chr4 59743211 59743407 -95886713 + B3 SINE B2 6 207 -9 5 1040 758 186 27 20 chr4 59743421 59743569 -95886551 + B1_Mur3 SINE Alu 1 149 0 5 1040 378 0 0 0 chr4 59743748 59743790 -95886330 + (GGA)n Simple_repeat Simple_repeat 1 42 0 5 1040 450 0 0 0 chr4 59743800 59743850 -95886270 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1040 563 286 91 12 chr4 59743851 59744024 -95886096 + B3A SINE B2 16 186 -9 5 1040 626 185 32 16 chr4 59744760 59744886 -95885234 - B1_Mur1 SINE Alu -19 130 3 5 1040 949 129 7 0 chr4 59745219 59745366 -95884754 - B1_Mus1 SINE Alu 0 148 1 5 1040 21 36 0 0 chr4 59745443 59745471 -95884649 + AT_rich Low_complexity Low_complexity 1 28 0 5 1040 1028 92 36 30 chr4 59745505 59745673 -95884447 + B2_Mm2 SINE B2 2 170 -25 5 1040 1312 71 0 107 chr4 59745821 59746027 -95884093 - B2_Mm2 SINE B2 -11 184 1 5 1040 400 277 89 37 chr4 59746290 59746637 -95883483 - L1M5 LINE L1 -274 5890 5530 5 1040 510 266 50 22 chr4 59746782 59746963 -95883157 - B3 SINE B2 -30 186 1 5 1040 506 200 23 70 chr4 59747009 59747138 -95882982 - B3 SINE B2 -92 124 2 5 1040 638 221 172 12 chr4 59747256 59747425 -95882695 + B3A SINE B2 3 198 0 5 1040 401 221 0 11 chr4 59748480 59748567 -95881553 + B3 SINE B2 2 87 -129 5 1040 1080 168 99 5 chr4 59749163 59749355 -95880765 + B3 SINE B2 1 210 -6 5 1040 563 177 0 0 chr4 59750211 59750307 -95879813 - B1_Mur2 SINE Alu -6 143 48 5 1040 872 132 22 0 chr4 59750980 59751116 -95879004 - B1_Mur4 SINE Alu -6 144 6 5 1040 521 257 99 4 chr4 59751866 59752077 -95878043 + B4A SINE B4 1 271 -21 5 1040 774 179 132 26 chr4 59752277 59752466 -95877654 + B3 SINE B2 2 210 -6 5 1040 266 219 82 0 chr4 59752470 59752543 -95877577 + L1MEc LINE L1 795 873 -5527 5 1040 1129 52 0 0 chr4 59752552 59752687 -95877433 + B1_Mus2 SINE Alu 2 136 -11 5 1040 215 61 30 0 chr4 59752793 59752826 -95877294 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1040 631 209 62 67 chr4 59752840 59753035 -95877085 + B3A SINE B2 5 198 0 5 1040 235 268 94 8 chr4 59753104 59753232 -95876888 + L1MEc LINE L1 1458 1596 -4804 5 1040 247 253 41 21 chr4 59753602 59753699 -95876421 + CT-rich Low_complexity Low_complexity 4 102 0 6 1040 585 143 198 16 chr4 59753731 59753852 -95876268 + B1_Mur4 SINE Alu 1 143 -7 6 1040 1135 96 71 6 chr4 59753935 59754103 -95876017 + B2_Mm2 SINE B2 2 180 -15 6 1040 180 0 0 0 chr4 59754103 59754123 -95875997 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1040 245 253 42 0 chr4 59754307 59754402 -95875718 + L1MEc LINE L1 3052 3150 -3169 5 1040 11449 145 45 20 chr4 59754404 59757395 -95872725 + L1_Mur3 LINE L1 298 3367 -2513 6 1040 5745 212 85 19 chr4 59757382 59757814 -95872306 + Lx6 LINE L1 6068 6531 -929 6 1040 342 0 0 0 chr4 59757814 59757852 -95872268 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1040 5745 212 85 19 chr4 59757852 59758715 -95871405 + Lx6 LINE L1 6532 7447 -13 6 1040 679 260 52 0 chr4 59758989 59759162 -95870958 - Lx8 LINE L1 -933 6540 6359 6 1040 804 175 22 0 chr4 59759300 59759437 -95870683 + B1_Mur4 SINE Alu 1 140 -10 6 1040 561 254 21 14 chr4 59759645 59759789 -95870331 + B1F1 SINE Alu 5 149 0 6 1040 368 248 38 0 chr4 59759906 59760011 -95870109 + PB1D9 SINE Alu 1 109 -11 6 1040 387 219 21 0 chr4 59760680 59760774 -95869346 - ID_B1 SINE B4 -191 101 2 6 1040 324 0 0 0 chr4 59761730 59761766 -95868354 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1040 2066 261 77 42 chr4 59761834 59762601 -95867519 - Lx9 LINE L1 -151 7493 6700 6 1040 504 309 111 52 chr4 59762598 59763210 -95866910 - L1MB3 LINE L1 -113 6070 5423 6 1040 979 60 0 9 chr4 59763417 59763554 -95866566 + B1_Mus1 SINE Alu 15 143 -5 6 1040 205 132 18 54 chr4 59763768 59763824 -95866296 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 6 1040 880 169 7 0 chr4 59763900 59764042 -95866078 + B1_Mus1 SINE Alu 2 144 -4 6 1040 426 69 0 0 chr4 59764058 59764116 -95866004 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1040 447 200 85 43 chr4 59764116 59764257 -95865863 - B3A SINE B2 -50 148 2 6 1040 189 107 0 0 chr4 59766173 59766201 -95863919 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1040 777 156 39 0 chr4 59767513 59767641 -95862479 + B1_Mur3 SINE Alu 1 133 -16 6 1040 251 264 0 40 chr4 59768402 59768477 -95861643 + ID4_ SINE ID 2 73 -10 6 1040 635 271 0 0 chr4 59768612 59768752 -95861368 + B1F1 SINE Alu 6 145 -4 6 16 624 232 123 12 chr4 59768768 59768938 -95861182 + B3 SINE B2 28 216 0 6 1041 468 229 19 0 chr4 59770243 59770348 -95859772 + PB1D10 SINE Alu 9 115 -2 6 1041 304 283 75 56 chr4 59770829 59770990 -95859130 - MIRb SINE MIR -77 191 28 6 1041 521 208 142 0 chr4 59771072 59771192 -95858928 + ID_B1 SINE B4 82 218 -6 6 1041 225 0 0 0 chr4 59771346 59771371 -95858749 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 6 1041 285 29 0 0 chr4 59772111 59772145 -95857975 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1041 315 0 0 0 chr4 59772748 59772783 -95857337 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1041 270 0 0 0 chr4 59772783 59772812 -95857308 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1041 927 228 11 0 chr4 59772949 59773138 -95856982 + B3 SINE B2 1 191 -25 6 1041 678 197 42 14 chr4 59773326 59773470 -95856650 - B1_Mur1 SINE Alu 0 149 2 6 1041 189 147 0 0 chr4 59773896 59773930 -95856190 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1041 29 0 0 0 chr4 59774279 59774308 -95855812 + AT_rich Low_complexity Low_complexity 1 29 0 6 1041 3128 89 9 11 chr4 59774694 59775139 -95854981 + L1_Mus3 LINE L1 6195 6638 0 6 1041 1354 207 181 19 chr4 59775157 59775516 -95854604 - MTD LTR MaLR -2 417 1 6 1041 931 102 47 0 chr4 59775566 59775693 -95854427 + B1_Mus1 SINE Alu 3 135 -13 6 1041 1360 261 31 6 chr4 59775708 59776062 -95854058 + ORR1D2 LTR MaLR 4 366 -4 6 1041 1504 187 113 11 chr4 59776215 59776588 -95853532 + MTD LTR MaLR 1 411 -8 6 1041 338 234 0 0 chr4 59776837 59776924 -95853196 + ID4_ SINE ID 11 97 -55 6 1041 1202 68 0 0 chr4 59776937 59777085 -95853035 - B1_Mus1 SINE Alu 0 148 1 6 1041 189 0 0 0 chr4 59777089 59777110 -95853010 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1041 180 0 0 0 chr4 59777169 59777189 -95852931 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1041 713 243 54 50 chr4 59777215 59777436 -95852684 + ID_B1 SINE B4 1 222 -2 6 1041 327 104 0 0 chr4 59777436 59777484 -95852636 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 6 1041 606 205 121 16 chr4 59778903 59779027 -95851093 + B1_Mur1 SINE Alu 2 138 -11 6 1041 378 107 0 0 chr4 59779027 59779083 -95851037 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 6 1041 249 347 0 0 chr4 59779167 59779239 -95850881 + MIR SINE MIR 51 122 -140 6 1041 717 250 129 31 chr4 59779239 59779284 -95850836 - B3 SINE B2 -3 213 169 6 1041 216 0 0 0 chr4 59779284 59779308 -95850812 + (TATG)n Simple_repeat Simple_repeat 2 25 0 6 1041 717 250 129 31 chr4 59779308 59779456 -95850664 - B3 SINE B2 -48 168 1 6 1041 247 225 45 91 chr4 59779464 59779552 -95850568 + MIRc SINE MIR 128 211 -57 6 1041 987 143 68 11 chr4 59779732 59779909 -95850211 + ORR1C2 LTR MaLR 1 187 -197 6 1041 29 0 0 0 chr4 59779934 59779963 -95850157 + AT_rich Low_complexity Low_complexity 1 29 0 6 1041 1300 104 38 0 chr4 59780145 59780328 -95849792 + B2_Mm2 SINE B2 1 190 -5 6 1041 768 241 103 6 chr4 59782092 59782293 -95847827 + B4A SINE B4 40 258 -34 6 1041 991 58 29 0 chr4 59782656 59782794 -95847326 - B1_Mus1 SINE Alu 0 148 7 6 1041 625 236 31 74 chr4 59782794 59782884 -95847236 - ID_B1 SINE B4 0 223 6 6 1041 586 179 42 0 chr4 59782932 59783027 -95847093 - PB1D7 SINE Alu -21 99 1 6 1041 1107 257 73 23 chr4 59783309 59783612 -95846508 + MTE2b LTR MaLR 6 323 -56 6 1041 216 0 0 0 chr4 59783735 59783759 -95846361 + (CAGG)n Simple_repeat Simple_repeat 3 26 0 6 1041 819 226 27 37 chr4 59784752 59784940 -95845180 - ID_B1 SINE B4 0 224 39 6 1041 1409 58 0 0 chr4 59785724 59785895 -95844225 + L1_Mus1 LINE L1 5991 6161 -406 6 1041 1006 77 0 47 chr4 59785895 59786045 -95844075 + L1_Mus1 LINE L1 6425 6567 0 6 1041 204 234 134 45 chr4 59786051 59786118 -95844002 + L3 LINE CR1 4407 4479 -10 6 1041 377 266 34 57 chr4 59786156 59786269 -95843851 - PB1D10 SINE Alu 0 149 19 6 1041 21 0 0 0 chr4 59786933 59786954 -95843166 + AT_rich Low_complexity Low_complexity 1 21 0 6 1041 328 227 202 0 chr4 59787003 59787206 -95842914 - L1MA9 LINE L1 -13 6299 6056 6 1041 248 270 40 13 chr4 59787230 59787305 -95842815 - ID2 SINE ID -4 79 3 6 1041 292 263 167 10 chr4 59787367 59787463 -95842657 - RSINE1 SINE B4 -54 111 1 6 1041 246 321 97 62 chr4 59787498 59787611 -95842509 + PB1D10 SINE Alu 1 117 0 6 1041 843 169 7 33 chr4 59787777 59787930 -95842190 - B1_Mur3 SINE Alu 0 149 1 6 1041 184 328 49 0 chr4 59788063 59788124 -95841996 - L2b LINE L2 -2 3373 3310 6 1041 369 189 211 0 chr4 59788554 59788649 -95841471 + PB1D10 SINE Alu 3 117 0 6 1041 736 303 60 15 chr4 59788670 59788871 -95841249 + ID_B1 SINE B4 14 223 -1 6 1041 269 234 0 86 chr4 59788890 59788960 -95841160 + PB1D9 SINE Alu 26 89 -31 6 1041 279 0 0 0 chr4 59788973 59789004 -95841116 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1041 297 0 0 0 chr4 59789008 59789041 -95841079 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1041 297 0 0 0 chr4 59789041 59789073 -95841047 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1041 387 0 0 0 chr4 59789101 59789144 -95840976 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1041 1109 192 25 0 chr4 59789144 59789342 -95840778 + B3 SINE B2 12 214 -2 6 1041 242 250 19 0 chr4 59789435 59789487 -95840633 - ID4_ SINE ID -30 53 1 6 1041 912 137 27 14 chr4 59789852 59790000 -95840120 + B1_Mur4 SINE Alu 1 150 0 6 1041 225 343 71 60 chr4 59790008 59790191 -95839929 + Charlie8 DNA MER1_type 77 261 -2167 6 1041 465 284 7 73 chr4 59791036 59791173 -95838947 + ID_B1 SINE B4 78 205 -19 6 1041 234 0 0 0 chr4 59791178 59791204 -95838916 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1041 300 289 43 32 chr4 59791283 59791376 -95838744 + PB1D10 SINE Alu 3 96 -21 6 1041 206 291 0 0 chr4 59791401 59791456 -95838664 + GA-rich Low_complexity Low_complexity 2 56 0 6 1041 1143 68 7 0 chr4 59791583 59791729 -95838391 + B1_Mus1 SINE Alu 2 148 0 6 1041 241 270 89 11 chr4 59791735 59791825 -95838295 - ORSL-2b DNA Tip100 -69 439 343 6 1041 395 266 0 0 chr4 59792117 59792196 -95837924 - ID_B1 SINE B4 -56 168 90 6 1041 243 194 47 31 chr4 59792141 59792205 -95837915 + YREP_Mm Unknown Unknown 254 318 -1494 6 1041 1850 207 64 22 chr4 59792489 59792931 -95837189 + Lx5 LINE L1 6535 7046 -4 6 1041 21 71 0 0 chr4 59792931 59792973 -95837147 + AT_rich Low_complexity Low_complexity 1 42 0 6 1041 430 235 0 0 chr4 59793123 59793204 -95836916 + B3 SINE B2 1 81 -135 6 1041 679 200 8 0 chr4 59793312 59793432 -95836688 + B1_Mur4 SINE Alu 30 150 0 6 1041 742 144 114 0 chr4 59794126 59794258 -95835862 + B1_Mur2 SINE Alu 3 149 0 6 1041 727 264 95 29 chr4 59794553 59794826 -95835294 + B4A SINE B4 2 292 0 6 1041 186 43 0 0 chr4 59795580 59795603 -95834517 + (GAAA)n Simple_repeat Simple_repeat 1 23 0 6 1041 678 229 150 27 chr4 59795744 59796004 -95834116 - B4A SINE B4 0 292 1 6 1041 404 241 0 18 chr4 59796170 59796280 -95833840 + PB1D10 SINE Alu 8 115 -2 6 1041 405 0 0 0 chr4 59796993 59797038 -95833082 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 7 1041 676 204 0 45 chr4 59797238 59797392 -95832728 + B1_Mur3 SINE Alu 2 148 -1 7 1041 586 135 48 9 chr4 59797523 59797628 -95832492 + B1_Mur3 SINE Alu 40 148 -1 7 1041 571 316 9 36 chr4 59797738 59797958 -95832162 + ID_B1 SINE B4 4 217 -7 7 1041 952 181 6 0 chr4 59798235 59798401 -95831719 + URR1A DNA MER1_type 45 211 -15 7 1041 514 227 85 8 chr4 59798449 59798578 -95831542 - B1F SINE Alu -10 139 1 7 1041 297 75 0 0 chr4 59799163 59799203 -95830917 + PB1D9 SINE Alu 74 113 -7 7 1041 213 310 0 0 chr4 59799327 59799385 -95830735 - AluG_3 SINE Alu -93 218 161 7 1041 219 125 0 0 chr4 59799465 59799497 -95830623 - B3 SINE B2 -155 61 30 7 1041 294 29 0 0 chr4 59799497 59799532 -95830588 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1041 241 160 39 20 chr4 59800379 59800430 -95829690 - L2b LINE L2 0 3375 3324 7 1041 272 197 164 27 chr4 59800477 59800550 -95829570 + B1_Mus1 SINE Alu 2 84 -64 7 1041 356 314 84 50 chr4 59800545 59800756 -95829364 + MLT1B LTR MaLR 164 390 0 7 1041 534 31 0 0 chr4 59800796 59800860 -95829260 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 7 1041 581 283 66 6 chr4 59800861 59800989 -95829131 - ID_B1 SINE B4 -45 179 42 7 1041 3499 30 0 0 chr4 59800989 59801385 -95828735 + MTA_Mm LTR MaLR 1 396 0 7 1041 581 283 66 6 chr4 59801385 59801423 -95828697 - ID SINE ID -183 41 3 7 1041 842 212 141 0 chr4 59801437 59801621 -95828499 - B3 SINE B2 -6 210 1 7 1041 480 282 298 75 chr4 59801629 59802046 -95828074 + Zaphod DNA Tip100 3450 3967 -64 7 1041 422 232 0 0 chr4 59802046 59802128 -95827992 + ID4_ SINE ID 1 82 -1 7 1041 277 162 0 252 chr4 59802128 59802194 -95827926 + Zaphod DNA Tip100 3968 4009 -22 7 1041 247 216 19 19 chr4 59802711 59802763 -95827357 - RSINE1 SINE B4 0 165 114 7 1041 652 260 131 42 chr4 59802773 59803010 -95827110 - RMER15 LTR ERVL -26 549 292 7 1041 1388 156 9 0 chr4 59803179 59803403 -95826717 + URR1A DNA MER1_type 1 226 0 7 1041 410 243 54 36 chr4 59803854 59803965 -95826155 + B1F SINE Alu 37 149 0 7 1041 503 169 16 16 chr4 59803977 59804103 -95826017 + GA-rich Low_complexity Low_complexity 3 128 0 7 1041 644 231 86 61 chr4 59804104 59804314 -95825806 + B3A SINE B2 2 213 -3 7 1041 396 291 35 14 chr4 59804530 59804673 -95825447 + RMER20B LTR ERVK 219 364 -263 7 1041 485 228 58 64 chr4 59804895 59805051 -95825069 - B3 SINE B2 -6 192 36 7 1041 660 208 0 8 chr4 59805051 59805172 -95824948 + MTC LTR MaLR 1 120 -301 7 1041 272 27 0 26 chr4 59805326 59805364 -95824756 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1041 594 310 60 4 chr4 59805365 59805598 -95824522 + L1MC3 LINE L1 7524 7769 -16 7 1041 1185 251 143 55 chr4 59806287 59806625 -95823495 + MT2B LTR ERVL 1 378 -223 7 1041 1179 115 23 0 chr4 59806625 59806799 -95823321 - B2_Mm1t SINE B2 -14 179 2 7 1041 1185 251 143 55 chr4 59806799 59806969 -95823151 + MT2B LTR ERVL 379 553 -48 7 1041 301 150 65 32 chr4 59807032 59807094 -95823026 + MT2B LTR ERVL 536 599 -2 7 1041 317 270 112 0 chr4 59807094 59807182 -95822938 + RSINE1 SINE B4 13 110 -55 7 1041 694 139 61 0 chr4 59807160 59807275 -95822845 - ORR1D2 LTR MaLR -248 122 1 7 1041 6603 45 1 1 chr4 59807412 59808201 -95821919 + L1Md_F2 LINE L1 5781 6569 -13 7 1041 821 256 48 5 chr4 59808752 59808960 -95821160 - ID_B1 SINE B4 -7 217 1 7 1041 436 165 0 185 chr4 59809285 59809404 -95820716 + ORR1C1 LTR MaLR 1 112 -266 7 1041 294 150 16 32 chr4 59809443 59809505 -95820615 + ORR1C2 LTR MaLR 1 61 -358 7 1041 916 112 34 27 chr4 59809503 59809650 -95820470 - B2_Mm1t SINE B2 -2 191 44 7 1041 583 189 169 7 chr4 59809618 59809772 -95820348 + ORR1C2 LTR MaLR 123 301 -83 7 1041 580 323 0 0 chr4 59809797 59809921 -95820199 + RSINE1 SINE B4 21 144 -21 7 1041 612 83 0 0 chr4 59809924 59810020 -95820100 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 1041 1287 258 72 60 chr4 59810073 59810135 -95819985 + MTD LTR MaLR 1 47 -372 7 1041 1445 69 26 0 chr4 59810135 59810324 -95819796 - B2_Mm2 SINE B2 0 195 2 7 1041 1287 258 72 60 chr4 59810324 59810661 -95819459 + MTD LTR MaLR 48 405 -14 7 1041 266 326 169 7 chr4 59810669 59810811 -95819309 - MLT1L LTR MaLR -143 467 303 7 1041 214 227 45 0 chr4 59810879 59810923 -95819197 - ID4_ SINE ID -12 71 26 7 1041 180 310 13 53 chr4 59811222 59811297 -95818823 + MIRc SINE MIR 79 150 -118 7 1041 666 240 7 20 chr4 59811350 59811503 -95818617 - RSINE1 SINE B4 -12 153 3 7 1041 1229 112 0 21 chr4 59811577 59811733 -95818387 + B2_Mm2 SINE B2 1 155 -40 7 1041 180 0 0 0 chr4 59811733 59811753 -95818367 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 7 1041 1229 112 0 21 chr4 59811753 59811788 -95818332 + B2_Mm2 SINE B2 156 187 -8 7 1041 502 245 67 24 chr4 59811866 59812099 -95818021 - L1ME3A LINE L1 -206 5967 5721 7 1041 366 80 0 0 chr4 59812108 59812158 -95817962 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1041 349 318 18 9 chr4 59812159 59812270 -95817850 - B4A SINE B4 0 292 181 7 1041 355 197 30 15 chr4 59812324 59812391 -95817729 - B4A SINE B4 -219 73 6 7 1041 259 202 0 25 chr4 59812466 59812547 -95817573 + CT-rich Low_complexity Low_complexity 2 80 0 7 1041 1183 68 0 0 chr4 59812552 59812699 -95817421 - B1_Mus2 SINE Alu 0 147 1 7 1041 450 231 27 27 chr4 59812709 59812820 -95817300 - PB1D9 SINE Alu -7 113 3 7 1041 466 252 76 0 chr4 59812831 59812962 -95817158 - B1F SINE Alu -8 141 1 7 1041 375 78 0 0 chr4 59813110 59813161 -95816959 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1041 184 255 0 56 chr4 59813402 59813456 -95816664 - L4 LINE RTE -647 1382 1332 7 1041 696 225 51 0 chr4 59813620 59813758 -95816362 - B1_Mur4 SINE Alu -5 145 1 7 1041 818 159 117 10 chr4 59813834 59814031 -95816089 + ID_B1 SINE B4 1 218 -6 7 1041 501 243 215 32 chr4 59814045 59814292 -95815828 + B4A SINE B4 1 292 0 7 1041 711 0 0 0 chr4 59814448 59814527 -95815593 + (TTC)n Simple_repeat Simple_repeat 3 81 0 7 1041 513 246 126 74 chr4 59814548 59814697 -95815423 - B4A SINE B4 -46 246 83 7 1041 789 224 106 0 chr4 59814697 59814876 -95815244 - B3A SINE B2 0 198 1 7 1041 513 246 126 74 chr4 59814876 59814941 -95815179 - B4A SINE B4 -210 82 21 7 1041 244 299 0 44 chr4 59815593 59815684 -95814436 - RMER5 LTR ERV1 -43 491 405 7 1041 453 100 0 41 chr4 59815695 59815768 -95814352 - B1_Mur2 SINE Alu -3 146 77 7 1041 629 238 15 99 chr4 59815836 59816037 -95814083 - RMER5 LTR ERV1 -199 335 152 7 1041 776 127 85 50 chr4 59816046 59816187 -95813933 - B1_Mus2 SINE Alu 0 147 2 7 1041 776 158 0 7 chr4 59816706 59816859 -95813261 + CT-rich Low_complexity Low_complexity 4 155 0 7 1041 1283 109 22 0 chr4 59817246 59817429 -95812691 - B2_Mm2 SINE B2 -7 188 2 7 1041 305 253 381 16 chr4 59820474 59820663 -95809457 - MLT1F LTR MaLR 0 569 312 7 1041 333 330 91 27 chr4 59820663 59820850 -95809270 - MLT1F LTR MaLR -347 201 3 7 1041 378 171 0 0 chr4 59820857 59820927 -95809193 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1041 23 33 0 0 chr4 59821179 59821209 -95808911 + AT_rich Low_complexity Low_complexity 1 30 0 7 1041 603 234 70 6 chr4 59821403 59821575 -95808545 - B3A SINE B2 -15 183 1 7 1041 912 162 200 11 chr4 59822415 59822590 -95807530 - B3 SINE B2 -8 208 1 7 1041 204 40 0 0 chr4 59822691 59822716 -95807404 + (TAA)n Simple_repeat Simple_repeat 1 25 0 7 1041 391 245 76 76 chr4 59823212 59823384 -95806736 + ID_B1 SINE B4 17 188 -36 7 1041 803 237 115 5 chr4 59823403 59823611 -95806509 + B4A SINE B4 1 231 -61 7 1041 366 279 0 0 chr4 59823614 59823693 -95806427 + B1_Mur3 SINE Alu 2 80 -69 7 1041 263 180 47 47 chr4 59823703 59823767 -95806353 + B4A SINE B4 225 288 -4 7 1041 207 0 0 0 chr4 59823784 59823807 -95806313 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1041 1214 42 0 0 chr4 59823812 59823954 -95806166 - B1_Mus2 SINE Alu -5 142 1 7 1041 462 157 80 44 chr4 59823956 59824069 -95806051 - PB1D10 SINE Alu 0 117 1 7 1041 318 288 79 117 chr4 59824111 59824402 -95805718 - B4 SINE B4 -12 280 1 7 1041 240 317 116 27 chr4 59824402 59824548 -95805572 - MLT1K LTR MaLR -5 590 432 7 1041 261 0 0 0 chr4 59824961 59824990 -95805130 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1041 387 0 0 0 chr4 59824990 59825032 -95805088 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1041 233 200 0 0 chr4 59825140 59825190 -95804930 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1041 1540 43 27 0 chr4 59825222 59825410 -95804710 - B2_Mm2 SINE B2 -1 194 2 7 1041 228 206 0 0 chr4 59825443 59825477 -95804643 + B1_Mur4 SINE Alu 2 35 -115 7 1041 334 132 0 0 chr4 59825469 59825522 -95804598 + B1_Mus2 SINE Alu 95 147 0 7 1041 730 215 0 0 chr4 59825558 59825693 -95804427 - B1_Mur2 SINE Alu -13 136 2 7 1041 1197 191 9 5 chr4 59825715 59825925 -95804195 - B3 SINE B2 -5 211 1 7 1041 351 65 0 0 chr4 59826236 59826282 -95803838 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 7 1041 615 255 0 27 chr4 59826291 59826440 -95803680 - B1_Mur2 SINE Alu -1 148 4 7 1041 372 302 6 95 chr4 59826440 59826470 -95803650 - ID_B1 SINE B4 -2 222 60 7 1041 410 187 10 90 chr4 59826779 59826879 -95803241 + RSINE1 SINE B4 71 162 -3 7 1041 213 286 97 12 chr4 59827007 59827116 -95803004 + L2b LINE L2 3242 3408 -18 7 1041 192 77 0 0 chr4 59827254 59827280 -95802840 + (CACG)n Simple_repeat Simple_repeat 2 27 0 7 1041 271 274 0 0 chr4 59827541 59827603 -95802517 - B1F1 SINE Alu -21 128 67 7 1041 693 154 71 31 chr4 59828319 59828332 -95801788 - B1_Mur4 SINE Alu -16 134 125 7 1041 216 0 0 0 chr4 59828332 59828356 -95801764 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1041 693 154 71 31 chr4 59828356 59828469 -95801651 - B1_Mur4 SINE Alu -26 124 3 7 1041 236 319 166 7 chr4 59828519 59828635 -95801485 - MLT1K LTR MaLR -60 535 397 8 1041 780 189 7 20 chr4 59828635 59828786 -95801334 - B1_Mur2 SINE Alu 0 149 1 8 1041 236 319 166 7 chr4 59828786 59828808 -95801312 - MLT1K LTR MaLR -199 396 375 8 1041 648 343 86 15 chr4 59828879 59829284 -95800836 + LTR33A LTR ERVL 84 517 -3 8 1041 256 299 13 0 chr4 59829535 59829612 -95800508 - L2 LINE L2 -1349 2070 1993 8 1041 399 89 0 0 chr4 59829987 59830043 -95800077 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1041 1063 184 39 5 chr4 59830651 59830859 -95799261 + ID_B1 SINE B4 1 215 -9 8 1041 889 227 32 0 chr4 59831597 59831782 -95798338 + B3 SINE B2 3 193 -23 8 1041 434 127 62 12 chr4 59831789 59831869 -95798251 + B1_Mur1 SINE Alu 66 149 0 8 1041 379 340 52 47 chr4 59831990 59832203 -95797917 - LTR16C LTR ERVL -273 216 3 8 1041 354 123 0 0 chr4 59833096 59833153 -95796967 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1041 327 205 277 0 chr4 59833154 59833237 -95796883 - PB1D9 SINE Alu -10 110 5 8 1041 660 215 107 25 chr4 59833254 59833450 -95796670 - B3 SINE B2 0 216 5 8 1041 379 300 16 8 chr4 59833463 59833584 -95796536 - PB1 SINE Alu -4 123 2 8 1041 345 316 82 13 chr4 59833643 59833874 -95796246 - L1MB5 LINE L1 -104 6070 5824 8 1041 336 257 83 0 chr4 59833891 59834000 -95796120 - L1MA9 LINE L1 -7 6305 6188 8 1041 1001 110 0 46 chr4 59834009 59834069 -95796051 + B1_Mus1 SINE Alu 1 60 -88 8 1041 438 20 0 0 chr4 59834069 59834120 -95796000 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 8 1041 1382 79 6 0 chr4 59834122 59834300 -95795820 - B2_Mm2 SINE B2 -15 180 2 8 1041 1001 110 0 46 chr4 59834300 59834389 -95795731 + B1_Mus1 SINE Alu 61 146 -2 8 1041 551 266 56 37 chr4 59834421 59834636 -95795484 - L1MA9 LINE L1 -117 6195 5977 8 1041 267 144 36 0 chr4 59834650 59834720 -95795400 - Lx5 LINE L1 -1687 5773 5702 8 1041 3608 135 128 25 chr4 59834816 59835501 -95794619 - RMER6A LTR ERVK 0 756 1 8 1041 230 286 48 0 chr4 59835539 59835602 -95794518 - ID4_ SINE ID -15 68 3 8 1041 443 255 17 43 chr4 59835646 59835761 -95794359 - B1F1 SINE Alu -32 117 6 8 1041 225 296 68 118 chr4 59835761 59835797 -95794323 - B4 SINE B4 -74 188 66 8 1041 859 274 94 17 chr4 59835845 59836205 -95793915 - L1MB2 LINE L1 -80 6091 5704 8 1041 342 229 235 37 chr4 59836218 59836354 -95793766 + B3 SINE B2 2 164 -52 8 1041 273 163 0 0 chr4 59836815 59836864 -95793256 + CT-rich Low_complexity Low_complexity 3 51 0 8 1041 207 162 0 0 chr4 59837029 59837066 -95793054 + CT-rich Low_complexity Low_complexity 2 38 0 8 1041 669 241 59 35 chr4 59837094 59837296 -95792824 - B4 SINE B4 -83 209 3 8 1041 482 323 11 102 chr4 59837348 59837417 -95792703 - MER45A DNA Tip100 -7 171 102 8 1041 1067 223 5 14 chr4 59837417 59837626 -95792494 + B3 SINE B2 1 207 -9 8 1041 482 323 11 102 chr4 59837626 59837742 -95792378 - MER45A DNA Tip100 -77 101 3 8 1041 283 284 72 24 chr4 59837793 59837876 -95792244 - B4 SINE B4 -124 168 82 8 1041 359 340 82 0 chr4 59838270 59838429 -95791691 - MIR SINE MIR -86 176 5 8 1041 328 284 18 64 chr4 59839608 59839717 -95790403 + MER5A1 DNA MER1_type 7 110 -56 8 1041 943 147 86 0 chr4 59839726 59839889 -95790231 - ORR1B1 LTR MaLR -2 392 216 8 1041 381 22 0 0 chr4 59839889 59839935 -95790185 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 8 1041 1029 77 70 0 chr4 59839935 59840078 -95790042 - B2_Mm2 SINE B2 -40 155 3 8 1041 1109 153 36 18 chr4 59840080 59840300 -95789820 - ORR1B1 LTR MaLR -170 224 1 8 1041 417 297 45 9 chr4 59840360 59840472 -95789648 + PB1D10 SINE Alu 2 117 0 8 1041 235 196 18 18 chr4 59840484 59840543 -95789577 + CT-rich Low_complexity Low_complexity 1 59 0 8 1041 270 0 0 0 chr4 59840543 59840573 -95789547 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 8 1041 204 242 14 43 chr4 59840573 59840588 -95789532 + polypyrimidine Low_complexity Low_complexity 2 16 0 8 1041 325 237 34 121 chr4 59840645 59840794 -95789326 + MT2B2 LTR ERVL 129 264 -320 8 1041 398 175 96 25 chr4 59840693 59840807 -95789313 + PB1D7 SINE Alu 8 125 -24 8 1041 211 175 24 24 chr4 59840792 59840833 -95789287 + ID4_ SINE ID 9 49 -34 8 1041 280 208 24 83 chr4 59840833 59840917 -95789203 + ID4_ SINE ID 2 80 -3 8 1041 659 241 6 47 chr4 59841004 59841174 -95788946 - RSINE1 SINE B4 0 165 3 8 1041 597 324 158 65 chr4 59841665 59842299 -95787821 + L2 LINE L2 2115 2807 -612 8 1041 766 337 20 4 chr4 59842507 59842760 -95787360 + Tigger7 DNA MER2_type 12 268 -2223 8 1041 751 250 143 22 chr4 59842802 59843072 -95787048 - ORR1D2 LTR MaLR -51 319 8 8 1041 462 289 93 21 chr4 59843095 59843289 -95786831 + Tigger7 DNA MER2_type 2284 2491 0 8 1041 483 252 68 0 chr4 59843631 59843734 -95786386 - B1F SINE Alu -29 120 11 8 1041 796 233 114 0 chr4 59844107 59844309 -95785811 + B4A SINE B4 17 241 -51 8 1041 4662 119 4 25 chr4 59844810 59845501 -95784619 + RLTR33 LTR ERVK 1 677 -1 8 1041 342 0 0 0 chr4 59846155 59846193 -95783927 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1041 307 230 173 13 chr4 59846231 59846306 -95783814 - RSINE1 SINE B4 -76 89 3 8 1041 213 312 0 0 chr4 59846394 59846442 -95783678 - PB1D7 SINE Alu -67 53 6 8 1041 22 35 0 0 chr4 59847160 59847189 -95782931 + AT_rich Low_complexity Low_complexity 1 29 0 8 1041 1314 161 5 0 chr4 59847194 59847399 -95782721 + B3 SINE B2 1 206 -10 8 1041 345 218 12 37 chr4 59847590 59847671 -95782449 + B4 SINE B4 193 271 -21 8 1041 222 37 0 0 chr4 59847744 59847771 -95782349 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1041 190 159 227 0 chr4 59848198 59848242 -95781878 - MIRm SINE MIR -77 199 146 8 1041 1016 224 161 39 chr4 59848431 59848761 -95781359 - ORR1D2 LTR MaLR 0 370 1 8 1041 189 0 0 0 chr4 59848813 59848834 -95781286 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1041 712 175 0 16 chr4 59848844 59848966 -95781154 + B1_Mur1 SINE Alu 5 124 -25 8 1041 224 278 0 0 chr4 59848970 59849024 -95781096 + B3A SINE B2 38 91 -107 8 1041 435 106 0 0 chr4 59849026 59849092 -95781028 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1041 1240 48 0 0 chr4 59849269 59849416 -95780704 - B1_Mus2 SINE Alu 0 147 1 8 1041 1201 164 0 5 chr4 59849441 59849649 -95780471 - B3 SINE B2 -7 209 3 8 1041 783 197 13 26 chr4 59849765 59849916 -95780204 - B1_Mur1 SINE Alu 0 149 1 8 1041 24 0 0 0 chr4 59850001 59850025 -95780095 + AT_rich Low_complexity Low_complexity 1 24 0 8 1041 287 49 24 0 chr4 59850028 59850069 -95780051 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1041 372 118 0 0 chr4 59850069 59850137 -95779983 + (CAGA)n Simple_repeat Simple_repeat 2 69 0 8 1041 291 292 0 0 chr4 59850142 59850207 -95779913 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 8 1041 1056 77 0 0 chr4 59850214 59850357 -95779763 + (TCCC)n Simple_repeat Simple_repeat 2 144 0 8 1041 291 303 0 63 chr4 59850365 59850460 -95779660 - PB1D10 SINE Alu -28 89 1 8 1041 441 331 47 0 chr4 59850460 59850533 -95779587 - ID SINE ID -143 81 2 8 1041 801 186 7 27 chr4 59851043 59851192 -95778928 - B1_Mur1 SINE Alu -2 147 2 8 1041 279 265 69 46 chr4 59851968 59852055 -95778065 + B1F SINE Alu 34 122 -27 8 1041 365 216 107 9 chr4 59852057 59852105 -95778015 - MT2A LTR ERVL 0 533 483 8 1041 297 0 0 0 chr4 59852105 59852138 -95777982 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1041 365 216 107 9 chr4 59852138 59852201 -95777919 - MT2A LTR ERVL -51 482 411 8 1041 1634 122 16 8 chr4 59852205 59852453 -95777667 - ORR1B2 LTR MaLR -2 365 116 8 1041 1265 96 6 17 chr4 59852453 59852634 -95777486 + B2_Mm1t SINE B2 1 179 -14 8 1041 315 158 27 2 chr4 59852666 59852776 -95777344 + B2_Mm2 SINE B2 47 195 0 8 1041 761 96 24 16 chr4 59852772 59852899 -95777221 - ORR1B2 LTR MaLR -237 130 3 8 1041 1351 188 44 87 chr4 59852922 59853256 -95776864 - MT2A LTR ERVL -153 448 1 8 1041 237 236 0 18 chr4 59853396 59853452 -95776668 + CT-rich Low_complexity Low_complexity 2 56 0 8 1041 628 133 70 9 chr4 59853462 59853576 -95776544 - B1_Mur3 SINE Alu -11 138 18 8 1041 396 235 12 0 chr4 59853712 59853793 -95776327 - PB1D10 SINE Alu -7 110 29 8 1041 217 285 63 70 chr4 59854669 59854842 -95775278 + MIRc SINE MIR 51 216 -52 8 1041 262 191 0 0 chr4 59856303 59856350 -95773770 + PB1D7 SINE Alu 4 50 -70 8 1041 484 189 245 0 chr4 59857323 59857429 -95772691 - RSINE1 SINE B4 -31 134 3 8 1041 680 188 75 0 chr4 59858498 59858631 -95771489 + B3A SINE B2 1 143 -55 8 1041 310 346 22 22 chr4 59858594 59858733 -95771387 - RMER15 LTR ERVL -15 560 422 8 1041 1930 112 67 83 chr4 59858730 59859102 -95771018 + ORR1B1 LTR MaLR 21 386 -8 8 1041 670 246 114 0 chr4 59859216 59859391 -95770729 - RMER30 DNA MER1_type -1 201 7 8 1041 1059 261 111 3 chr4 59859938 59860253 -95769867 - MTEa LTR MaLR -28 351 3 8 1041 250 324 90 19 chr4 59861414 59861576 -95768544 - MLT1H2 LTR MaLR -158 253 78 8 1041 275 226 0 8 chr4 59861654 59861712 -95768408 - B3 SINE B2 -138 60 6 8 1041 643 163 37 31 chr4 59861721 59861898 -95768222 - B3 SINE B2 -14 181 2 8 1041 1485 68 5 10 chr4 59861910 59862103 -95768017 - B2_Mm2 SINE B2 -1 194 3 8 1041 853 200 0 0 chr4 59862132 59862272 -95767848 + B1_Mus1 SINE Alu 1 140 -8 8 1041 198 0 0 0 chr4 59862272 59862294 -95767826 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1041 204 40 0 0 chr4 59863714 59863739 -95766381 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 9 1041 216 0 0 0 chr4 59863745 59863769 -95766351 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 9 1041 329 304 35 9 chr4 59863778 59863891 -95766229 - PB1D10 SINE Alu -1 116 1 9 1041 195 312 213 43 chr4 59864225 59864389 -95765731 - L3 LINE CR1 -1159 3330 3139 9 1041 2129 132 237 86 chr4 59864852 59865605 -95764515 - RMER6C LTR ERVK 0 720 2 9 1041 284 290 107 59 chr4 59865822 59866077 -95764043 - L2a LINE L2 -93 3333 3064 9 1041 447 87 0 0 chr4 59866077 59866146 -95763974 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1041 303 49 0 0 chr4 59866146 59866186 -95763934 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1041 284 309 158 51 chr4 59866186 59866293 -95763827 - L2a LINE L2 -363 3063 2943 9 1041 264 196 0 97 chr4 59866407 59866469 -95763651 - B1_Mur2 SINE Alu -5 144 89 9 1041 349 258 58 124 chr4 59866476 59866554 -95763566 - B3A SINE B2 0 198 136 9 1041 1383 65 43 0 chr4 59866554 59866738 -95763382 - B2_Mm2 SINE B2 -3 192 1 9 1041 349 258 58 124 chr4 59866738 59866796 -95763324 - B3A SINE B2 -63 135 71 9 1041 947 217 14 47 chr4 59867706 59867919 -95762201 - B3 SINE B2 -10 206 1 9 1041 2124 128 77 22 chr4 59868230 59868596 -95761524 - ORR1B1 LTR MaLR -8 386 1 9 1041 608 229 13 53 chr4 59868675 59868827 -95761293 - B1_Mur3 SINE Alu -2 147 2 9 1041 1839 139 105 38 chr4 59869266 59869610 -95760510 - ORR1B2 LTR MaLR 0 367 1 9 1041 181 208 14 14 chr4 59869726 59869799 -95760321 + CT-rich Low_complexity Low_complexity 2 74 0 9 1041 1326 194 32 4 chr4 59869926 59870179 -95759941 + MTD LTR MaLR 42 301 -118 9 1041 1236 204 155 7 chr4 59870542 59870900 -95759220 + MTD LTR MaLR 1 419 0 9 1041 197 250 98 16 chr4 59871334 59871395 -95758725 - MIR SINE MIR -77 185 120 9 1041 284 215 0 58 chr4 59871524 59871593 -95758527 - ID4_ SINE ID -14 69 5 9 1041 475 282 157 60 chr4 59871611 59871796 -95758324 - MER20 DNA MER1_type 0 219 17 9 1041 291 190 0 0 chr4 59871999 59872057 -95758063 + (TATG)n Simple_repeat Simple_repeat 3 60 0 9 1041 325 275 0 0 chr4 59872232 59872301 -95757819 - ID4 SINE ID -14 69 1 9 1041 308 173 0 37 chr4 59872356 59872410 -95757710 - PB1D10 SINE Alu -11 106 55 9 1041 1868 152 2 164 chr4 59873616 59874087 -95756033 - RMER10B LTR ERVL 0 398 4 9 1041 288 91 0 0 chr4 59874088 59874132 -95755988 + (TGG)n Simple_repeat Simple_repeat 1 44 0 9 1041 613 211 0 0 chr4 59874133 59874237 -95755883 - PB1D9 SINE Alu -12 108 5 9 1041 852 243 24 5 chr4 59874272 59874479 -95755641 - B3 SINE B2 -5 211 1 9 1041 324 0 0 0 chr4 59874997 59875033 -95755087 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1041 5903 67 15 0 chr4 59875448 59876290 -95753830 - L1_Mus4 LINE L1 -295 6341 5488 9 1041 1951 123 20 13 chr4 59876290 59876595 -95753525 + L1_Mus4 LINE L1 6329 6635 -1 9 1041 192 135 0 0 chr4 59876632 59876669 -95753451 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1041 435 259 18 9 chr4 59876676 59876789 -95753331 - B1F2 SINE Alu -32 117 4 9 1041 259 364 46 53 chr4 59876789 59876821 -95753299 - B4 SINE B4 -79 193 64 9 1041 970 215 26 0 chr4 59878147 59878342 -95751778 + B3 SINE B2 1 200 -16 9 1041 453 233 52 118 chr4 59878347 59878543 -95751577 + ID_B1 SINE B4 13 224 0 9 1041 623 165 67 52 chr4 59878543 59878677 -95751443 + B1_Mur4 SINE Alu 15 150 0 9 1041 1109 101 0 0 chr4 59879052 59879201 -95750919 + B1_Mur4 SINE Alu 2 150 0 9 1041 828 118 0 0 chr4 59880173 59880300 -95749820 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 9 1041 346 186 132 38 chr4 59880309 59880415 -95749705 - B1F2 SINE Alu 0 149 34 9 1041 222 91 0 0 chr4 59880683 59880716 -95749404 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1041 826 171 14 14 chr4 59880795 59880937 -95749183 - B1_Mur3 SINE Alu -7 142 1 9 1041 571 24 0 56 chr4 59881423 59881552 -95748568 - L1Md_F3 LINE L1 0 6584 6500 9 1041 211 245 0 19 chr4 59881552 59881566 -95748554 + polypyrimidine Low_complexity Low_complexity 2 15 0 9 1041 226 205 0 0 chr4 59881595 59881634 -95748486 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1041 469 295 69 65 chr4 59881635 59881944 -95748176 - B4 SINE B4 -22 270 1 9 1041 203 114 0 22 chr4 59881944 59881989 -95748131 + (TCTCTG)n Simple_repeat Simple_repeat 2 45 0 9 1041 400 331 61 15 chr4 59882065 59882197 -95747923 - B1F SINE Alu -7 142 5 9 1041 436 286 0 9 chr4 59882200 59882306 -95747814 - B1F SINE Alu -1 148 44 9 1041 196 0 118 0 chr4 59882353 59882387 -95747733 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 9 1041 574 248 20 7 chr4 59882449 59882595 -95747525 + B1F SINE Alu 1 148 -1 9 1041 705 280 124 61 chr4 59883388 59883848 -95746272 - L1MC3 LINE L1 0 7785 7297 9 1041 866 236 50 0 chr4 59884390 59884572 -95745548 + B3 SINE B2 16 206 -10 9 1041 865 227 53 21 chr4 59884691 59884880 -95745240 - B3 SINE B2 -4 212 18 9 1041 282 56 0 0 chr4 59884880 59884916 -95745204 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 9 1041 700 125 125 0 chr4 59884918 59885038 -95745082 - B1_Mur4 SINE Alu -15 135 1 9 1041 634 259 104 27 chr4 59885044 59885227 -95744893 - B3A SINE B2 -1 197 1 9 1041 1269 281 106 14 chr4 59885441 59885949 -95744171 - L1MB7 LINE L1 -293 5891 5337 9 1041 597 214 34 60 chr4 59885967 59886116 -95744004 - B3A SINE B2 -6 192 48 9 1041 349 296 102 61 chr4 59886849 59887172 -95742948 - ORR1D2 LTR MaLR -23 336 1 9 1041 251 167 321 0 chr4 59887446 59887530 -95742590 - L1MA10 LINE L1 -106 6228 6118 9 1041 642 249 24 77 chr4 59888112 59888321 -95741799 - B3A SINE B2 0 198 1 9 1041 219 253 0 0 chr4 59888512 59888666 -95741454 + (TG)n Simple_repeat Simple_repeat 2 155 0 9 1041 310 282 17 120 chr4 59889003 59889120 -95741000 - PB1D10 SINE Alu -1 116 12 9 1041 225 340 146 21 chr4 59889004 59889148 -95740972 - ID_B1 SINE B4 0 224 63 9 1041 318 152 68 0 chr4 59889148 59889207 -95740913 - L1M LINE L1 -760 5420 5358 9 1041 245 299 0 0 chr4 59889483 59889550 -95740570 - L1MB1 LINE L1 -230 5938 5872 9 1041 3534 180 76 37 chr4 59889763 59890525 -95739595 - RLTR40 LTR ERVK -7 810 19 9 1041 474 173 43 48 chr4 59890528 59890649 -95739471 - PB1D9 SINE Alu -8 142 19 9 1041 290 164 53 107 chr4 59890582 59890657 -95739463 - MT2B LTR ERVL -360 241 171 9 1041 825 284 5 23 chr4 59891349 59891565 -95738555 - B4 SINE B4 -78 214 3 9 1041 437 209 370 7 chr4 59891792 59891946 -95738174 + ID_B1 SINE B4 2 211 -13 9 1041 405 328 30 23 chr4 59892595 59892726 -95737394 + RSINE1 SINE B4 1 132 -33 9 1041 2596 202 33 49 chr4 59892749 59893321 -95736799 + RLTR18 LTR ERVK 9 571 -45 9 1041 275 258 166 11 chr4 59893533 59893663 -95736457 - MIRb SINE MIR -87 181 22 9 1041 1363 103 16 0 chr4 59894494 59894679 -95735441 + B2_Mm2 SINE B2 2 189 -6 9 1041 527 244 48 16 chr4 59894736 59894861 -95735259 + ID_B1 SINE B4 86 214 -10 9 1041 346 284 69 64 chr4 59894966 59895154 -95734966 - RMER15 LTR ERVL -12 563 375 9 1041 1811 156 56 99 chr4 59895629 59895842 -95734278 + ORR1C2 LTR MaLR 1 188 -196 9 1041 279 0 0 0 chr4 59895842 59895873 -95734247 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 9 1041 1811 156 56 99 chr4 59895873 59896051 -95734069 + ORR1C2 LTR MaLR 189 375 -9 9 1041 229 312 43 0 chr4 59896060 59896153 -95733967 - PB1D10 SINE Alu -19 98 2 9 1041 443 160 13 26 chr4 59896190 59896267 -95733853 - PB1D9 SINE Alu -10 110 35 9 1041 843 246 64 46 chr4 59896296 59896624 -95733496 - RLTR15 LTR ERVK -25 334 1 9 1041 740 189 70 152 chr4 59896983 59897226 -95732894 - URR1A DNA MER1_type -3 223 1 9 1041 678 191 35 0 chr4 59898827 59898942 -95731178 + B3A SINE B2 5 123 -75 9 130 806 227 62 0 chr4 59899750 59899944 -95730176 + B3 SINE B2 1 206 -10 9 1042 456 19 0 0 chr4 59900555 59900608 -95729512 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 9 1042 723 216 7 7 chr4 59901429 59901569 -95728551 - B1_Mur1 SINE Alu -8 141 2 9 1042 342 0 0 0 chr4 59903585 59903623 -95726497 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 9 1042 620 250 121 11 chr4 59903774 59903840 -95726280 - MER3 DNA MER1_type -7 202 131 9 1042 279 0 0 0 chr4 59903840 59903871 -95726249 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1042 620 250 121 11 chr4 59903871 59903978 -95726142 - MER3 DNA MER1_type -79 130 11 9 1042 518 238 127 0 chr4 59904780 59904969 -95725151 + L1MA8 LINE L1 6069 6281 -10 9 1042 2420 87 16 0 chr4 59907599 59907920 -95722200 - ORR1A2 LTR MaLR 0 327 2 9 1042 733 117 107 8 chr4 59908217 59908338 -95721782 - B2_Mm2 SINE B2 -61 134 2 9 1042 243 0 0 0 chr4 59908409 59908436 -95721684 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1042 193 217 0 98 chr4 59908608 59908659 -95721461 - L3 LINE CR1 -952 3537 3492 9 1042 2374 127 88 17 chr4 59908671 59909080 -95721040 - BGLII_B LTR ERVK 0 441 4 9 1042 188 356 33 50 chr4 59910498 59910619 -95719501 - L2b LINE L2 -309 3066 2948 9 1042 814 205 0 62 chr4 59911153 59911314 -95718806 + RSINE1 SINE B4 15 165 0 9 1042 1201 68 0 0 chr4 59914485 59914632 -95715488 + B1_Mus2 SINE Alu 1 147 0 9 1042 387 60 0 0 chr4 59917947 59917997 -95712123 + (T)n Simple_repeat Simple_repeat 1 50 0 9 1042 580 233 75 59 chr4 59918073 59918260 -95711860 + B3A SINE B2 2 191 -7 1 1042 565 208 88 0 chr4 59918260 59918385 -95711735 + B1F2 SINE Alu 1 136 -13 1 1042 1002 225 66 9 chr4 59918521 59918732 -95711388 - ID_B1 SINE B4 0 224 2 1 1042 319 275 52 52 chr4 59919841 59919956 -95710164 - PB1D10 SINE Alu -2 115 1 1 1042 763 262 6 0 chr4 59919956 59920036 -95710084 - ID SINE ID -143 81 1 1 1042 347 363 24 0 chr4 59920061 59920185 -95709935 - L2b LINE L2 0 3375 3249 1 1042 258 242 16 31 chr4 59920285 59920349 -95709771 + MIRb SINE MIR 122 184 -84 1 1042 197 324 0 27 chr4 59920433 59920506 -95709614 - L2 LINE L2 -1856 1563 1493 1 1042 360 0 0 0 chr4 59920726 59920766 -95709354 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1042 264 279 139 0 chr4 59921066 59921152 -95708968 + MER5B DNA MER1_type 6 103 -75 1 1042 594 238 88 15 chr4 59921381 59921527 -95708593 + B3 SINE B2 2 161 -55 1 1042 369 0 0 0 chr4 59921532 59921573 -95708547 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1042 234 0 0 0 chr4 59921573 59921598 -95708522 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1042 305 240 132 102 chr4 59921598 59921612 -95708508 + B2_Mm2 SINE B2 160 172 -23 1 1042 244 259 83 115 chr4 59921612 59921687 -95708433 + RSINE1 SINE B4 19 105 -60 1 1042 276 100 0 0 chr4 59921687 59921727 -95708393 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1042 1292 105 21 10 chr4 59922399 59922591 -95707529 + B2_Mm2 SINE B2 2 195 0 1 1042 1422 47 0 94 chr4 59922969 59923182 -95706938 + B2_Mm2 SINE B2 3 195 0 1 1042 919 248 23 5 chr4 59923284 59923503 -95706617 - ID_B1 SINE B4 0 224 2 1 1042 378 296 8 25 chr4 59923530 59923648 -95706472 + PB1D10 SINE Alu 2 117 0 1 1042 213 205 0 43 chr4 59923672 59923718 -95706402 + B3A SINE B2 10 53 -145 1 1042 371 204 185 0 chr4 59923718 59923826 -95706294 + Lx6 LINE L1 7299 7426 -34 1 1042 826 244 39 0 chr4 59923846 59924026 -95706094 + B3 SINE B2 28 214 -2 1 1042 384 40 0 0 chr4 59924029 59924079 -95706041 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1042 245 29 29 0 chr4 59924612 59924646 -95705474 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1042 297 0 0 0 chr4 59925161 59925194 -95704926 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1042 416 297 99 7 chr4 59925194 59925346 -95704774 - B4A SINE B4 -133 159 1 1 1042 269 283 131 50 chr4 59925798 59925958 -95704162 + MER3 DNA MER1_type 32 204 -5 1 1042 501 296 127 11 chr4 59925819 59926000 -95704120 - MER3 DNA MER1_type -5 204 3 1 1042 527 265 26 0 chr4 59926190 59926307 -95703813 + RSINE1 SINE B4 4 123 -42 1 1042 604 276 92 0 chr4 59928335 59928498 -95701622 + ID_B1 SINE B4 42 219 -5 1 1042 414 0 0 0 chr4 59928605 59928651 -95701469 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1042 939 18 9 0 chr4 59929137 59929251 -95700869 - B1_Mm SINE Alu 0 147 33 1 1042 468 0 0 0 chr4 59929861 59929913 -95700207 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 1042 1321 81 5 31 chr4 59930035 59930227 -95699893 + B2_Mm2 SINE B2 1 187 -8 1 1042 298 306 70 53 chr4 59930608 59930722 -95699398 - B1F SINE Alu -12 137 22 1 1042 795 263 63 0 chr4 59930625 59930815 -95699305 - ID_B1 SINE B4 -21 203 2 1 1042 229 265 0 117 chr4 59930768 59930862 -95699258 - ZP3AR Satellite Satellite -123 89 7 1 1042 187 237 179 15 chr4 59930935 59931003 -95699117 - MIR SINE MIR -86 122 41 1 1042 272 308 0 0 chr4 59931282 59931347 -95698773 + RSINE1 SINE B4 85 149 -16 1 1042 342 67 0 0 chr4 59931347 59931392 -95698728 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1042 33 0 0 23 chr4 59931428 59931451 -95698669 + AT_rich Low_complexity Low_complexity 1 23 0 1 1042 863 113 32 199 chr4 59931451 59931562 -95698558 + B2_Mm2 SINE B2 3 100 -95 1 1042 1180 84 66 0 chr4 59931562 59931728 -95698392 - B2_Mm2 SINE B2 -14 181 5 1 1042 863 113 32 199 chr4 59931728 59931837 -95698283 + B2_Mm2 SINE B2 101 186 -9 1 1042 33 0 0 23 chr4 59931837 59931857 -95698263 + AT_rich Low_complexity Low_complexity 1 20 0 1 1042 469 244 12 0 chr4 59931875 59932035 -95698085 + (TA)n Simple_repeat Simple_repeat 1 162 0 1 1042 227 324 13 39 chr4 59932456 59932533 -95697587 + LTR85a LTR Gypsy? 618 692 -10 1 1042 405 273 0 0 chr4 59932687 59932775 -95697345 + RSINE1 SINE B4 68 155 -10 1 1042 969 279 103 56 chr4 59933180 59933320 -95696800 - Lx8 LINE L1 0 7473 7349 1 1042 695 240 24 77 chr4 59933320 59933528 -95696592 - B3A SINE B2 0 198 2 1 1042 969 279 103 56 chr4 59933528 59933813 -95696307 - Lx8 LINE L1 -125 7348 7028 1 1042 948 248 68 16 chr4 59933821 59934071 -95696049 + Lx8 LINE L1 6743 7005 -468 1 1042 2132 177 84 28 chr4 59934079 59934457 -95695663 + RLTR16 LTR ERVK 4 400 -105 1 1042 246 32 0 0 chr4 59934457 59934488 -95695632 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1042 2132 177 84 28 chr4 59934488 59934573 -95695547 + RLTR16 LTR ERVK 401 493 -12 1 1042 1994 174 91 42 chr4 59935010 59935558 -95694562 + RMER6A LTR ERVK 1 546 -210 1 1042 485 274 87 64 chr4 59935805 59936023 -95694097 + RMER2 LTR ERV1 334 556 -11 1 1042 1768 119 31 17 chr4 59936032 59936322 -95693798 + RMER6A LTR ERVK 463 756 0 1 1042 525 71 0 0 chr4 59936681 59936751 -95693369 + (TCC)n Simple_repeat Simple_repeat 2 71 0 1 1042 258 32 0 0 chr4 59936747 59936778 -95693342 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1042 436 248 422 10 chr4 59936875 59937074 -95693046 + B4A SINE B4 2 282 -10 1 1042 750 106 0 0 chr4 59937087 59937219 -95692901 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1042 317 247 82 87 chr4 59937865 59937906 -95692214 - B2_Mm2 SINE B2 0 195 2 1 1042 629 252 71 19 chr4 59937906 59938060 -95692060 - RSINE1 SINE B4 -1 164 3 1 1042 2313 66 3 23 chr4 59938280 59938589 -95691531 + L1_Mus1 LINE L1 6265 6567 0 1 1042 223 345 94 19 chr4 59938856 59939069 -95691051 + L3 LINE CR1 4020 4248 -241 1 1042 561 15 0 0 chr4 59939193 59939259 -95690861 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1042 739 319 11 30 chr4 59939318 59939580 -95690540 - B4A SINE B4 -35 257 1 1 1042 344 329 123 21 chr4 59939658 59939894 -95690226 + L2 LINE L2 2782 3041 -378 1 1042 1503 59 0 11 chr4 59940086 59940274 -95689846 + B2_Mm2 SINE B2 2 187 -8 1 1042 542 270 69 93 chr4 59940287 59940577 -95689543 - Lx8 LINE L1 -2 7471 7189 1 1042 1617 235 10 47 chr4 59940630 59941036 -95689084 - Lx8 LINE L1 -224 7249 6859 1 1042 279 0 0 0 chr4 59941518 59941549 -95688571 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1042 981 244 20 0 chr4 59941810 59942007 -95688113 - B3 SINE B2 -15 201 1 1 1042 475 316 19 31 chr4 59942151 59942311 -95687809 + RSINE1 SINE B4 3 160 -5 1 1042 411 224 0 0 chr4 59943944 59944020 -95686100 + ID4_ SINE ID 6 81 -2 1 1042 1804 245 14 8 chr4 59944604 59944970 -95685150 + ORR1D2 LTR MaLR 1 368 -2 1 1042 323 351 44 0 chr4 59945677 59945791 -95684329 - B4 SINE B4 -2 290 172 1 1042 21 0 0 0 chr4 59946917 59946938 -95683182 + AT_rich Low_complexity Low_complexity 1 21 0 1 1042 829 236 72 9 chr4 59947198 59947420 -95682700 + B4A SINE B4 1 236 -56 1 1042 8823 69 1 1 chr4 59947420 59948542 -95681578 - L1Md_F2 LINE L1 -168 5715 4594 1 1042 7198 48 4 4 chr4 59948542 59949372 -95680748 + L1Md_F2 LINE L1 5745 6574 -8 1 1042 292 211 76 101 chr4 59949412 59949491 -95680629 + B4A SINE B4 216 292 0 1 1042 594 131 0 0 chr4 59949492 59949591 -95680529 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1042 186 43 0 0 chr4 59949849 59949872 -95680248 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1042 947 261 125 9 chr4 59950822 59951150 -95678970 + ORR1D2 LTR MaLR 5 370 0 1 1042 383 344 23 0 chr4 59951247 59951378 -95678742 + LTR40a LTR ERVL 61 194 -325 1 1042 237 311 109 22 chr4 59951499 59951637 -95678483 + L2 LINE L2 2531 2680 -739 1 1042 315 338 71 114 chr4 59951699 59952023 -95678097 - HAL1 LINE L1 -2192 315 6 1 1042 493 214 92 117 chr4 59952036 59952065 -95678055 - B2_Mm2 SINE B2 -4 191 165 1 1042 441 0 0 0 chr4 59952065 59952114 -95678006 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1042 225 0 0 0 chr4 59952114 59952138 -95677982 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1042 775 214 92 117 chr4 59952138 59952303 -95677817 - B3A SINE B2 -21 177 1 1 1042 391 298 21 0 chr4 59952330 59952424 -95677696 + Tigger7 DNA MER2_type 2 97 -2394 1 1042 23 33 0 0 chr4 59952505 59952535 -95677585 + AT_rich Low_complexity Low_complexity 1 30 0 1 1042 303 271 9 45 chr4 59952535 59952647 -95677473 - Lx6 LINE L1 -58 7402 7295 1 1042 327 320 93 8 chr4 59952660 59952789 -95677331 + Tigger7 DNA MER2_type 2342 2481 -10 1 1042 3006 78 5 3 chr4 59952799 59953185 -95676935 + L1_Mus3 LINE L1 6248 6634 -4 1 1042 260 250 31 0 chr4 59953859 59953923 -95676197 - Cheshire DNA MER1_type -17 2403 2338 1 1042 329 271 84 73 chr4 59954149 59954328 -95675792 + ORR1E LTR MaLR 1 181 -178 1 1042 423 0 0 0 chr4 59954455 59954502 -95675618 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1042 669 194 0 0 chr4 59954511 59954614 -95675506 - B1_Mur1 SINE Alu -38 111 9 1 1042 450 308 42 17 chr4 59954514 59954633 -95675487 - B4 SINE B4 -95 197 76 1 1042 935 125 28 7 chr4 59954983 59955128 -95674992 + B1_Mur1 SINE Alu 1 148 -1 1 1042 462 271 37 0 chr4 59955790 59955897 -95674223 - B1F SINE Alu -31 118 8 1 1042 314 258 0 0 chr4 59955843 59955909 -95674211 - B4A SINE B4 -146 146 81 1 1042 526 259 72 38 chr4 59955910 59956203 -95673917 - L1MEc LINE L1 -4200 2200 1898 1 1042 392 274 136 11 chr4 59956407 59956584 -95673536 - L1MEc LINE L1 -5540 860 662 1 1042 1008 209 97 0 chr4 59956805 59957001 -95673119 + B3 SINE B2 1 215 -1 1 1042 197 132 0 26 chr4 59957010 59957049 -95673071 + CT-rich Low_complexity Low_complexity 1 38 0 1 1042 305 216 200 30 chr4 59957407 59957507 -95672613 + MLT1D LTR MaLR 254 370 -135 1 1042 641 253 33 54 chr4 59957884 59958068 -95672052 - B4 SINE B4 0 292 113 1 1042 256 250 17 0 chr4 59959360 59959415 -95670705 - RMER5 LTR ERV1 0 534 479 1 1042 482 279 31 0 chr4 59959415 59959544 -95670576 + RSINE1 SINE B4 2 134 -31 1 1042 267 150 0 0 chr4 59959594 59959654 -95670466 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1042 753 230 33 74 chr4 59959655 59959899 -95670221 - RMER5 LTR ERV1 -32 502 269 1 1042 452 240 80 33 chr4 59959918 59960069 -95670051 - RMER5 LTR ERV1 -337 197 40 1 1042 251 324 119 55 chr4 59960285 59960520 -95669600 + MLT1J-int LTR MaLR 520 769 -618 1 1042 219 204 0 0 chr4 59960740 59960794 -95669326 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1042 817 272 19 102 chr4 59960806 59961121 -95668999 - B4 SINE B4 -2 290 2 1 1042 1150 258 48 4 chr4 59961504 59961776 -95668344 + B4A SINE B4 5 288 -4 1 1042 26088 111 34 4 chr4 59961856 59963159 -95666961 - L1_Mus4 LINE L1 -1 6635 5298 1 1042 918 85 150 30 chr4 59963159 59963292 -95666828 - B1_Mur4 SINE Alu 0 150 2 1 1042 26088 161 12 12 chr4 59963292 59967974 -95662146 - L1_Mus4 LINE L1 -586 5297 613 1 1042 563 334 211 25 chr4 59968032 59968397 -95661723 - MER90a LTR ERV1 -177 437 5 1 1042 360 0 0 0 chr4 59968942 59968982 -95661138 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1042 387 0 0 0 chr4 59968982 59969024 -95661096 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1042 192 279 82 0 chr4 59969532 59969593 -95660527 - L2 LINE L2 -2908 511 446 1 1042 381 22 0 0 chr4 59971959 59972005 -95658115 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1042 435 312 9 0 chr4 59973938 59974047 -95656073 - B3 SINE B2 0 216 107 1 1042 502 319 50 0 chr4 59974047 59974207 -95655913 + B3 SINE B2 39 206 -10 1 1042 184 349 54 18 chr4 59974465 59974576 -95655544 - MIR SINE MIR -67 195 81 1 1042 182 370 0 14 chr4 59974695 59974769 -95655351 - MIRb SINE MIR -183 85 13 1 1042 207 0 0 0 chr4 59974886 59974909 -95655211 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1042 222 174 0 0 chr4 59975018 59975064 -95655056 + CT-rich Low_complexity Low_complexity 2 47 0 1 1042 362 326 53 40 chr4 59975131 59975270 -95654850 - B4A SINE B4 -13 279 140 1 1042 1983 128 9 59 chr4 59975270 59975609 -95654511 - RLTRETN_Mm LTR ERVK 0 322 1 1 1042 1439 129 16 24 chr4 59975620 59975866 -95654254 - MMETn-int LTR ERVK -11 4833 4590 1 1042 210 270 42 73 chr4 59975869 59975925 -95654195 - B4A SINE B4 -147 145 97 1 1042 1257 127 10 16 chr4 59975925 59976117 -95654003 - B2_Mm1t SINE B2 -2 191 1 1 1042 210 270 42 73 chr4 59976117 59976156 -95653964 - B4A SINE B4 -196 96 54 1 1042 358 353 17 8 chr4 59976132 59976252 -95653868 - B1F1 SINE Alu -28 121 1 1 1042 1008 231 4 82 chr4 59976864 59977143 -95652977 + RLTR9A LTR ERVK 112 368 0 1 1042 239 79 26 0 chr4 59977445 59977483 -95652637 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1042 513 0 0 0 chr4 59977522 59977579 -95652541 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1042 2099 147 103 112 chr4 59977579 59978140 -95651980 + RLTR45-int LTR ERVK 2092 2647 -4597 1 1042 36318 64 1 4 chr4 59978140 59984397 -95645723 - L1Md_F2 LINE L1 0 6585 246 1 1042 1649 150 17 14 chr4 59984397 59984688 -95645432 + ETnERV2-int LTR ERVK 1629 1920 -5486 1 1042 37470 31 7 8 chr4 59984691 59990258 -95639862 + L1Md_T LINE L1 26 5586 -297 1 1042 8922 38 0 0 chr4 59990258 59991254 -95638866 + L1Md_T LINE L1 5587 6582 0 1 1042 327 25 0 0 chr4 59991265 59991305 -95638815 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1042 1170 215 7 22 chr4 59991312 59991588 -95638532 + ETnERV2-int LTR ERVK 2928 3199 -4045 1 1042 676 119 9 9 chr4 59991606 59991716 -95638404 + ETnERV2-int LTR ERVK 1632 1741 -5665 1 1042 348 328 8 0 chr4 59991778 59991909 -95638211 + ETnERV-int LTR ERVK 1415 1546 -1768 1 1042 237 65 0 0 chr4 59991909 59991940 -95638180 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1042 265 324 48 29 chr4 59991948 59992053 -95638067 + ETnERV-int LTR ERVK 1550 1656 -1658 1 1042 6856 204 48 48 chr4 59992058 59993851 -95636269 + ETnERV2-int LTR ERVK 1363 4065 -3341 1 1042 23945 104 72 8 chr4 59993853 59998175 -95631945 - L1Md_F LINE L1 -1069 4814 208 1 1042 834 236 147 93 chr4 59998282 59998461 -95631659 + MT2A LTR ERVL 99 316 -177 1 1042 2054 131 70 3 chr4 59998461 59998774 -95631346 - L1_Mus2 LINE L1 0 6566 6233 1 1042 834 249 271 17 chr4 59998774 59998967 -95631153 + MT2A LTR ERVL 254 533 0 1 1042 720 207 0 0 chr4 59999362 59999483 -95630637 - B3 SINE B2 -95 121 1 1 1042 1186 223 5 0 chr4 59999520 59999735 -95630385 - B3 SINE B2 0 216 1 1 1042 227 182 0 0 chr4 60000610 60000654 -95629466 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1042 250 323 69 46 chr4 60000659 60000834 -95629286 - B3A SINE B2 -18 180 2 2 1042 934 268 118 17 chr4 60001436 60001782 -95628338 + MTD LTR MaLR 13 387 -32 3 1042 7233 66 34 8 chr4 60001839 60002744 -95627376 - RLTR13B3 LTR ERVK 0 929 1 4 1042 947 202 30 64 chr4 60002871 60003104 -95627016 - URR1A DNA MER1_type -1 225 1 5 1042 926 278 94 19 chr4 60003284 60003647 -95626473 + MLT1B LTR MaLR 1 390 0 6 1042 867 223 82 15 chr4 60003834 60004030 -95626090 - B3 SINE B2 -7 209 1 7 1042 975 204 37 104 chr4 60004659 60004993 -95625127 - RLTR9A LTR ERVK -23 360 42 8 1042 320 194 27 27 chr4 60005012 60005086 -95625034 - RMER16-int LTR ERVK -2 7404 7331 9 1042 284 179 0 35 chr4 60005539 60005597 -95624523 - RMER16-int LTR ERVK -1195 6211 6156 9 1042 12798 182 48 41 chr4 60005662 60008905 -95621215 - RMER16-int LTR ERVK -1230 4176 1415 9 1042 5241 162 49 56 chr4 60009004 60009710 -95620410 - RLTR45-int LTR ERVK -4045 3199 2494 1 1042 229 26 26 26 chr4 60009710 60009749 -95620371 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1042 5241 162 49 56 chr4 60009749 60010160 -95619960 - RLTR45-int LTR ERVK -4751 2493 2092 1 1042 342 45 0 0 chr4 60010160 60010204 -95619916 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1042 5241 162 49 56 chr4 60010204 60010230 -95619890 - RLTR45-int LTR ERVK -5153 2091 2063 1 1042 366 129 0 0 chr4 60010239 60010301 -95619819 + (TTTTA)n Simple_repeat Simple_repeat 4 65 0 1 1042 374 202 48 0 chr4 60010617 60010701 -95619419 - RLTR9A LTR ERVK 0 368 281 1 1042 774 250 25 88 chr4 60010702 60010987 -95619133 - RLTR9A LTR ERVK 0 368 102 1 1042 9477 68 0 1 chr4 60011550 60012749 -95617371 - L1Md_F2 LINE L1 -693 5190 3993 1 1042 3144 35 0 29 chr4 60012741 60012833 -95617287 + L1Md_F2 LINE L1 5212 5303 -580 1 1042 2174 38 75 0 chr4 60012833 60013099 -95617021 + L1Md_A LINE L1 6296 6581 -1 1 1042 3144 35 0 29 chr4 60013099 60013392 -95616728 + L1Md_F2 LINE L1 5304 5586 -297 1 1042 8653 46 4 1 chr4 60013392 60014383 -95615737 + L1Md_F2 LINE L1 5587 6580 -2 1 1042 328 366 15 8 chr4 60014421 60014553 -95615567 + B1F1 SINE Alu 1 133 -16 1 1042 665 291 55 45 chr4 60014522 60014742 -95615378 + B4A SINE B4 58 279 -13 1 1042 278 132 19 0 chr4 60014807 60014860 -95615260 + GA-rich Low_complexity Low_complexity 3 56 0 2 1042 446 337 48 43 chr4 60015081 60015296 -95614824 + MIRb SINE MIR 4 216 -52 2 1042 406 350 50 0 chr4 60015687 60015847 -95614273 - B3 SINE B2 -10 206 39 2 1042 445 303 9 0 chr4 60015847 60015956 -95614164 + B3 SINE B2 107 216 0 2 1042 186 71 0 0 chr4 60017821 60017849 -95612271 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1042 543 316 219 25 chr4 60021324 60021681 -95608439 + MER90a LTR ERV1 12 437 -177 2 1042 7149 41 1 0 chr4 60021782 60022632 -95607488 - L1Md_F2 LINE L1 0 6582 5732 2 1042 23727 156 24 5 chr4 60022663 60027843 -95602277 + L1_Mus4 LINE L1 1354 6633 -3 2 1042 1070 274 47 4 chr4 60027926 60028201 -95601919 - B4A SINE B4 -4 288 2 2 1042 704 273 27 119 chr4 60028583 60028878 -95601242 + B4 SINE B4 2 269 -23 2 1042 513 115 0 0 chr4 60028878 60028965 -95601155 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1042 251 150 0 16 chr4 60029277 60029338 -95600782 + (CCCTAA)n Simple_repeat Simple_repeat 3 62 0 3 1042 360 327 69 44 chr4 60029699 60029859 -95600261 + MER90a LTR ERV1 12 175 -439 3 1042 317 315 102 24 chr4 60029889 60030055 -95600065 + MER90a LTR ERV1 269 447 -167 3 1042 929 297 36 14 chr4 60030147 60030427 -95599693 - B4A SINE B4 -5 287 2 3 1042 382 291 9 46 chr4 60030706 60030814 -95599306 + B4 SINE B4 2 105 -187 3 1042 398 176 0 0 chr4 60030839 60030907 -95599213 - L1VL4 LINE L1 -5607 695 628 3 130 633 108 0 136 chr4 60030937 60031055 -95599065 - B2_Mm2 SINE B2 -93 102 1 3 1043 4166 103 2 24 chr4 60031055 60031670 -95598450 + MMETn-int LTR ERVK 2541 3141 -1703 3 1043 6669 152 18 36 chr4 60031639 60032735 -95597385 + ETnERV2-int LTR ERVK 6127 7203 -203 3 1043 340 236 370 10 chr4 60032738 60033014 -95597106 + RLTR13D6 LTR ERVK 155 531 -371 3 1043 496 100 23 70 chr4 60033014 60033100 -95597020 + ETnERV2-int LTR ERVK 7324 7405 -1 3 1043 1142 192 28 141 chr4 60033100 60033463 -95596657 + RLTRETN_Mm LTR ERVK 1 322 0 3 1043 2739 129 5 0 chr4 60033463 60033866 -95596254 - L1VL4 LINE L1 -5684 618 214 3 1043 4054 148 171 13 chr4 60033859 60034701 -95595419 - L1_Mur2 LINE L1 -2386 3491 2517 4 1043 1679 180 27 15 chr4 60034700 60035032 -95595088 - L1_Mur2 LINE L1 -5940 1146 811 4 1043 841 183 95 9 chr4 60035245 60035455 -95594665 + MERVL_2A-int LTR ERVL 5463 5690 -71 4 1043 227 209 86 43 chr4 60035463 60035533 -95594587 + ORR1A3-int LTR MaLR 567 639 -1324 4 1043 302 132 0 0 chr4 60035536 60035589 -95594531 + MERVL_2A-int LTR ERVL 5709 5761 0 4 1043 924 225 209 115 chr4 60035589 60035883 -95594237 + MT2A LTR ERVL 1 259 -274 4 1043 2412 114 3 3 chr4 60035883 60036217 -95593903 - L1_Mus2 LINE L1 0 6566 6233 4 1043 924 225 209 115 chr4 60036217 60036409 -95593711 + MT2A LTR ERVL 260 532 -1 4 1043 712 215 0 0 chr4 60036803 60036924 -95593196 - B3 SINE B2 -95 121 1 4 1043 1084 251 5 0 chr4 60036962 60037177 -95592943 - B3 SINE B2 0 216 1 4 1043 219 114 0 0 chr4 60038076 60038111 -95592009 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1043 259 274 140 56 chr4 60038112 60038255 -95591865 - B3A SINE B2 -42 156 2 4 1043 2538 192 40 75 chr4 60038363 60039832 -95590288 - L1VL4 LINE L1 -4384 1499 261 4 1043 973 116 20 0 chr4 60039858 60040005 -95590115 - L1_Mm LINE L1 -942 4941 4792 4 1043 1356 68 18 0 chr4 60040032 60040279 -95589841 + L1VL1 LINE L1 941 1197 -2501 5 1043 512 299 12 83 chr4 60040298 60040550 -95589570 - L1VL1 LINE L1 -6104 318 85 5 1043 1028 102 20 0 chr4 60040632 60040779 -95589341 - L1_Mm LINE L1 -942 4941 4792 5 1043 12334 105 3 5 chr4 60040782 60042348 -95587772 + L1Md_F2 LINE L1 3818 5386 -497 5 1043 5280 136 61 20 chr4 60042348 60043268 -95586852 + RLTR13A2 LTR ERVK 1 958 0 5 1043 12334 105 3 5 chr4 60043268 60043473 -95586647 + L1Md_F2 LINE L1 5381 5585 -298 5 1043 7404 87 21 6 chr4 60043473 60044444 -95585676 + L1Md_F2 LINE L1 5587 6571 -11 5 1043 11165 146 99 9 chr4 60044444 60045523 -95584597 + L1_Mus3 LINE L1 5581 6636 -2 5 1043 2118 111 3 9 chr4 60045740 60046058 -95584062 - IAPLTR2b LTR ERVK -11 316 1 5 1043 4560 96 30 23 chr4 60046058 60046722 -95583398 - IAPEz-int LTR ERVK 0 6481 5813 5 1043 38642 77 24 13 chr4 60046720 60051890 -95578230 - IAPEz-int LTR ERVK -1057 5424 1 5 1043 2012 108 3 22 chr4 60051907 60052220 -95577900 - IAPLTR2b LTR ERVK -20 307 1 5 1043 428 208 0 0 chr4 60052520 60052597 -95577523 + MTA_Mm LTR MaLR 13 89 -332 5 1043 1492 76 0 15 chr4 60052601 60052801 -95577319 + MTA_Mm LTR MaLR 200 396 0 5 1043 434 187 13 0 chr4 60052801 60052876 -95577244 - B3A SINE B2 -118 80 5 5 1043 250 237 83 102 chr4 60053033 60053141 -95576979 - MamSINE1 SINE tRNA -170 120 15 5 1043 294 208 52 0 chr4 60053927 60054004 -95576116 + IAPEY3-int LTR ERVK 836 916 -5905 6 1043 663 136 91 0 chr4 60054081 60054191 -95575929 + IAPEY3-int LTR ERVK 940 1059 -6621 6 1043 625 159 186 40 chr4 60054705 60054882 -95575238 + MMERVK10C-int LTR ERVK 435 637 -4769 6 1043 349 123 18 0 chr4 60054957 60055014 -95575106 + MMERVK10C-int LTR ERVK 1089 1146 -4260 6 1043 1425 99 383 11 chr4 60055015 60055388 -95574732 + MMERVK10C-int LTR ERVK 1885 2396 -5185 6 1043 20372 96 35 1 chr4 60055382 60059933 -95570187 + MMERVK10C-int LTR ERVK 2524 7227 -354 6 1043 1990 49 14 29 chr4 60059928 60060203 -95569917 + MMERVK10C-int LTR ERVK 7410 7680 0 6 1043 1740 157 22 13 chr4 60060203 60060520 -95569600 + RLTR46 LTR ERVK 1 320 0 6 1043 1336 42 0 0 chr4 60060520 60060686 -95569434 - L1Md_F3 LINE L1 -447 6137 5972 6 1043 16052 121 234 5 chr4 60060675 60063058 -95567062 - L1Md_F LINE L1 -568 5315 2176 6 1043 4450 148 11 64 chr4 60063058 60063905 -95566215 - RLTR13B4 LTR ERVK -1 802 1 6 1043 16052 131 184 5 chr4 60063905 60065749 -95564371 - L1Md_F LINE L1 -3708 2175 206 6 1043 544 129 0 0 chr4 60065749 60065842 -95564278 + RMER16-int LTR ERVK 2890 2982 -2424 6 1043 726 251 73 5 chr4 60066142 60066334 -95563786 + B3 SINE B2 1 205 -11 6 1043 462 284 13 39 chr4 60066528 60066682 -95563438 - MLT1B LTR MaLR 0 390 241 6 1043 989 127 0 0 chr4 60066695 60066852 -95563268 + L1_Mus2 LINE L1 6410 6566 0 6 1043 672 202 101 179 chr4 60066852 60067148 -95562972 - MT2A LTR ERVL -260 273 1 6 1043 603 176 59 0 chr4 60067148 60067284 -95562836 - MERVL_2A-int LTR ERVL 0 5761 5618 6 1043 746 174 98 10 chr4 60067288 60067491 -95562629 - MERVL_2A-int LTR ERVL -78 5683 5463 6 1043 1466 187 57 6 chr4 60067686 60068003 -95562117 + L1_Mur2 LINE L1 816 1148 -5938 7 1043 233 189 0 54 chr4 60067978 60068034 -95562086 + L1_Mur2 LINE L1 2499 2551 -3335 7 1043 1621 114 0 0 chr4 60068031 60068276 -95561844 + MusHAL1 LINE L1 119 363 -2991 7 1043 885 161 19 19 chr4 60068281 60068439 -95561681 + RLTR9D LTR ERVK 241 398 -5 7 1043 430 165 127 9 chr4 60068452 60068562 -95561558 + L1VL4 LINE L1 575 697 -5605 7 1043 449 282 10 0 chr4 60068585 60068688 -95561432 - B4 SINE B4 -187 105 2 7 1043 439 359 40 58 chr4 60068964 60069073 -95561047 - MER90a LTR ERV1 -18 596 492 7 1043 1083 271 25 4 chr4 60069073 60069354 -95560766 + B4A SINE B4 2 288 -4 7 1043 439 359 40 58 chr4 60069354 60069370 -95560750 - MER90a LTR ERV1 -123 491 481 7 1043 351 65 0 0 chr4 60069370 60069416 -95560704 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1043 439 359 40 58 chr4 60069416 60069617 -95560503 - MER90a LTR ERV1 -134 480 275 7 1043 320 391 30 6 chr4 60069655 60069822 -95560298 - MER90a LTR ERV1 -439 175 5 7 1043 314 115 0 16 chr4 60070174 60070236 -95559884 + (TTAGGG)n Simple_repeat Simple_repeat 3 63 0 7 1043 363 246 0 0 chr4 60070535 60070661 -95559459 + (TG)n Simple_repeat Simple_repeat 1 126 0 7 1043 794 275 38 41 chr4 60070661 60070953 -95559167 - B4 SINE B4 0 292 2 8 1043 977 282 47 4 chr4 60071339 60071613 -95558507 + B4A SINE B4 2 287 -5 8 1043 22450 153 19 11 chr4 60071676 60074974 -95555146 - L1_Mus4 LINE L1 -1 6635 3303 8 1043 264 30 0 0 chr4 60074974 60075007 -95555113 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 8 1043 22450 174 14 17 chr4 60075007 60077715 -95552405 - L1_Mus4 LINE L1 -2581 3302 613 8 1043 409 312 84 11 chr4 60077796 60077974 -95552146 - MER90 LTR ERV1 -200 375 185 8 1043 380 336 89 41 chr4 60077985 60078131 -95551989 - MER90 LTR ERV1 -450 164 12 8 1043 226 398 12 0 chr4 60078732 60078815 -95551305 + AluG_3 SINE Alu 137 220 -91 8 1043 180 71 0 0 chr4 60081634 60081640 -95548480 + (CA)n Simple_repeat Simple_repeat 2 7 0 8 1043 384 59 0 0 chr4 60081640 60081691 -95548429 + (CAA)n Simple_repeat Simple_repeat 3 53 0 8 1043 180 71 0 0 chr4 60081691 60081712 -95548408 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1043 187 284 135 0 chr4 60082204 60082278 -95547842 - MIR SINE MIR -106 156 73 8 1043 468 217 37 28 chr4 60083644 60083753 -95546367 - B3 SINE B2 0 216 107 9 1043 407 276 114 38 chr4 60083753 60083911 -95546209 + B3 SINE B2 39 208 -8 9 1043 289 382 36 12 chr4 60084329 60084496 -95545624 - MIR SINE MIR -88 174 4 9 1043 563 98 11 0 chr4 60084736 60084828 -95545292 + (TCC)n Simple_repeat Simple_repeat 1 93 0 9 1043 633 314 33 29 chr4 60084893 60085103 -95545017 - B4A SINE B4 -14 278 68 9 1043 307 400 8 0 chr4 60085091 60085211 -95544909 - B1F1 SINE Alu -28 121 1 9 1043 949 229 118 59 chr4 60085763 60086102 -95544018 + RLTR9A LTR ERVK 10 368 0 9 1043 25 0 0 0 chr4 60086410 60086435 -95543685 + AT_rich Low_complexity Low_complexity 1 25 0 9 1043 306 0 0 0 chr4 60086488 60086522 -95543598 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1043 633 196 28 67 chr4 60086522 60086702 -95543418 + RLTR45-int LTR ERVK 2092 2264 -4980 9 1043 826 98 9 0 chr4 60086721 60086833 -95543287 - B1_Mm SINE Alu -1 146 34 1 1043 4077 172 29 31 chr4 60086833 60087768 -95542352 + ETnERV2-int LTR ERVK 1259 2191 -5215 1 1043 1233 236 2 107 chr4 60087868 60088410 -95541710 + RMER16-int LTR ERVK 2189 2530 -4876 1 1043 651 46 0 0 chr4 60088411 60088498 -95541622 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 1 1043 441 0 0 0 chr4 60088498 60088547 -95541573 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1043 10612 182 56 36 chr4 60088547 60090665 -95539455 + RMER16-int LTR ERVK 1566 3602 -1804 1 1043 958 117 0 14 chr4 60090665 60090804 -95539316 + B1_Mm SINE Alu 2 138 -9 1 1043 275 49 24 0 chr4 60090804 60090845 -95539275 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1043 10612 178 58 35 chr4 60090845 60091409 -95538711 + RMER16-int LTR ERVK 3603 4172 -1234 1 1043 23 0 0 0 chr4 60091493 60091516 -95538604 + AT_rich Low_complexity Low_complexity 1 23 0 1 1043 333 267 33 33 chr4 60091678 60091798 -95538322 + ETnERV2-int LTR ERVK 6306 6425 -981 1 1043 269 160 0 39 chr4 60092009 60092061 -95538059 + ETnERV2-int LTR ERVK 7335 7384 -22 1 1043 925 219 22 97 chr4 60092126 60092404 -95537716 + RLTR9A LTR ERVK 112 368 0 1 1043 781 235 66 5 chr4 60093021 60093218 -95536902 + B3 SINE B2 1 209 -7 1 1043 343 300 24 24 chr4 60093409 60093532 -95536588 - MLT1B LTR MaLR 0 390 268 1 1043 411 269 136 12 chr4 60093743 60093903 -95536217 - MT2A LTR ERVL -2 599 347 1 1043 489 71 0 0 chr4 60094088 60094158 -95535962 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1043 286 213 0 0 chr4 60094160 60094221 -95535899 + B1_Mus2 SINE Alu 42 102 -45 1 1043 333 0 0 0 chr4 60094221 60094258 -95535862 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 1 1043 306 129 0 0 chr4 60094317 60094379 -95535741 + (CAGA)n Simple_repeat Simple_repeat 2 63 0 1 1043 600 50 0 0 chr4 60094506 60094586 -95535534 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1043 627 159 0 0 chr4 60094586 60094699 -95535421 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 1 1043 219 146 0 0 chr4 60094701 60094742 -95535378 + (GGGAGA)n Simple_repeat Simple_repeat 4 44 0 1 1043 283 191 0 31 chr4 60094744 60094809 -95535311 + B1_Mus2 SINE Alu 42 104 -43 1 1043 1971 147 66 105 chr4 60094852 60095415 -95534705 - RLTR45-int LTR ERVK -4612 2632 2092 1 1043 420 37 0 0 chr4 60095415 60095469 -95534651 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1043 228 130 0 0 chr4 60095514 60095560 -95534560 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 1 1043 835 259 11 85 chr4 60095876 60096159 -95533961 - RLTR9A LTR ERVK -5 363 102 1 1043 286 330 25 17 chr4 60096751 60096871 -95533249 + B1F1 SINE Alu 1 121 -28 1 1043 552 346 38 28 chr4 60096858 60097069 -95533051 + B4A SINE B4 67 279 -13 1 1043 230 209 0 29 chr4 60097143 60097212 -95532908 + GA-rich Low_complexity Low_complexity 2 68 0 1 1043 440 328 32 43 chr4 60097445 60097630 -95532490 + MIR SINE MIR 9 191 -71 1 1043 460 321 57 0 chr4 60098036 60098195 -95531925 - B3 SINE B2 -10 206 39 1 1043 417 306 19 0 chr4 60098195 60098303 -95531817 + B3 SINE B2 107 216 0 1 1043 188 289 92 0 chr4 60099605 60099681 -95530439 + MIR SINE MIR 74 156 -106 1 1043 360 0 0 0 chr4 60100178 60100218 -95529902 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1043 226 380 0 0 chr4 60103026 60103097 -95527023 - AluF_3 SINE Alu -103 208 138 1 1043 431 323 221 31 chr4 60103677 60104035 -95526085 + MER90a LTR ERV1 12 437 -177 1 1043 21373 164 20 11 chr4 60104145 60109381 -95520739 + L1_Mus4 LINE L1 1354 6633 -3 1 1043 934 277 47 4 chr4 60109463 60109738 -95520382 - B4A SINE B4 -4 288 2 1 1043 714 269 30 126 chr4 60110120 60110415 -95519705 + B4 SINE B4 2 269 -23 1 1043 267 93 0 0 chr4 60110415 60110458 -95519662 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1043 246 149 44 15 chr4 60110770 60110838 -95519282 + (CCCTAA)n Simple_repeat Simple_repeat 4 73 0 1 1043 332 354 38 12 chr4 60111180 60111340 -95518780 + MER90a LTR ERV1 12 175 -439 1 1043 299 368 36 30 chr4 60111370 60111538 -95518582 + MER90a LTR ERV1 269 437 -177 1 1043 786 86 0 0 chr4 60111579 60111695 -95518425 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1043 946 300 36 14 chr4 60111711 60111992 -95518128 - B4A SINE B4 -4 288 2 1 1043 382 291 9 46 chr4 60112271 60112379 -95517741 + B4 SINE B4 2 105 -187 1 1043 321 203 0 0 chr4 60112404 60112468 -95517652 - L1VL4 LINE L1 -5607 695 632 1 1043 3933 99 5 22 chr4 60112470 60113101 -95517019 + MMETn-int LTR ERVK 2522 3141 -1703 1 1043 4714 120 26 1 chr4 60113202 60113920 -95516200 + ETnERV2-int LTR ERVK 6222 6957 -449 1 1043 11747 108 41 5 chr4 60113921 60115803 -95514317 + L1_Mm LINE L1 3828 5777 -106 1 1043 4391 68 2 16 chr4 60115803 60116417 -95513703 + RLTR10-int LTR ERVK 1382 1986 -1 1 1043 2182 101 122 34 chr4 60116417 60116795 -95513325 + RLTR10A LTR ERVK 1 411 0 1 1043 725 62 143 0 chr4 60116795 60116907 -95513213 + L1_Mus1 LINE L1 6439 6566 -1 1 1043 1520 47 0 30 chr4 60116917 60117116 -95513004 + B2_Mm1a SINE B2 1 193 0 1 1043 477 175 0 0 chr4 60117602 60117682 -95512438 + MTA_Mm LTR MaLR 10 89 -330 1 1043 1488 53 5 0 chr4 60117697 60117886 -95512234 + MTA_Mm LTR MaLR 207 396 0 1 1043 365 279 13 0 chr4 60117886 60117965 -95512155 - B3A SINE B2 -118 80 1 1 1043 221 247 83 102 chr4 60118117 60118225 -95511895 - MamSINE1 SINE tRNA -170 120 15 1 1043 240 308 102 45 chr4 60118848 60119025 -95511095 - B2_Mm2 SINE B2 -6 189 3 1 1043 836 269 122 44 chr4 60119620 60119971 -95510149 + MTD LTR MaLR 14 384 -35 1 1043 614 160 8 8 chr4 60120152 60120272 -95509848 - URR1B DNA MER1_type -4 221 102 1 1043 6717 83 15 6 chr4 60120272 60121546 -95508574 - L1Md_F2 LINE L1 -13 6569 5289 1 1043 23 0 0 0 chr4 60121546 60121569 -95508551 + AT_rich Low_complexity Low_complexity 1 23 0 1 1043 3610 50 11 0 chr4 60121569 60122013 -95508107 - L1Md_F3 LINE L1 -4 6580 6132 1 1043 1784 147 22 13 chr4 60122013 60122330 -95507790 + RLTR46 LTR ERVK 1 320 0 1 1043 252 211 53 0 chr4 60122446 60122522 -95507598 + IAPEY3-int LTR ERVK 837 916 -5905 1 1043 526 182 91 0 chr4 60122601 60122711 -95507409 + IAPEY3-int LTR ERVK 940 1059 -6621 1 1043 554 151 191 40 chr4 60123225 60123398 -95506722 + MMERVK10C-int LTR ERVK 435 633 -4773 1 1043 321 123 18 0 chr4 60123477 60123534 -95506586 + MMERVK10C-int LTR ERVK 1089 1146 -4260 1 1043 1259 107 383 11 chr4 60123535 60123908 -95506212 + MMERVK10C-int LTR ERVK 1885 2396 -5185 1 1043 20102 98 36 1 chr4 60123902 60128444 -95501676 + MMERVK10C-int LTR ERVK 2524 7227 -354 1 1043 1967 52 14 29 chr4 60128439 60128714 -95501406 + MMERVK10C-int LTR ERVK 7410 7680 0 1 1043 1727 157 22 13 chr4 60128714 60129031 -95501089 + RLTR46 LTR ERVK 1 320 0 1 1043 1287 54 0 0 chr4 60129031 60129197 -95500923 - L1Md_F3 LINE L1 -447 6137 5972 1 1043 7481 128 5 2 chr4 60129186 60130446 -95499674 - L1Md_F LINE L1 -568 5315 4052 1 1043 6854 119 3 4 chr4 60130451 60131570 -95498550 - L1Md_F LINE L1 -2595 3288 2171 1 1043 3652 145 34 19 chr4 60131572 60132419 -95497701 - RLTR13B4 LTR ERVK -1 892 1 1 1043 5717 134 69 3 chr4 60132419 60134263 -95495857 - L1Md_F LINE L1 -3708 2175 206 1 1043 497 133 0 11 chr4 60134266 60134357 -95495763 + RMER16-int LTR ERVK 2893 2982 -2424 1 1043 686 253 78 5 chr4 60134657 60134848 -95495272 + B3 SINE B2 1 205 -11 1 1043 460 291 13 39 chr4 60135042 60135196 -95494924 - MLT1B LTR MaLR 0 390 241 1 1043 382 285 91 138 chr4 60135150 60135209 -95494911 - MT2A LTR ERVL -141 460 399 1 1043 1009 121 0 0 chr4 60135209 60135366 -95494754 + L1_Mus2 LINE L1 6410 6566 0 1 1043 675 213 43 193 chr4 60135366 60135661 -95494459 - MT2A LTR ERVL -203 398 1 1 1043 578 182 61 0 chr4 60135665 60135797 -95494323 - MERVL_2A-int LTR ERVL -4 5757 5618 1 1043 796 159 98 10 chr4 60135801 60136004 -95494116 - MERVL_2A-int LTR ERVL -78 5683 5463 1 1043 1394 197 57 6 chr4 60136198 60136515 -95493605 + L1_Mur2 LINE L1 816 1148 -5938 1 1043 2733 213 142 34 chr4 60136504 60137390 -95492730 + L1_Mur2 LINE L1 2511 3492 -2388 1 1043 2177 127 0 3 chr4 60137383 60137722 -95492398 + L1VL4 LINE L1 214 551 -5751 1 1043 914 169 53 14 chr4 60137722 60137911 -95492209 + RLTR9F LTR ERVK 121 415 0 1 1043 553 182 16 8 chr4 60137916 60138038 -95492082 + L1VL4 LINE L1 575 697 -5605 1 1043 449 282 10 0 chr4 60138061 60138164 -95491956 - B4 SINE B4 -187 105 2 1 1043 458 356 40 58 chr4 60138440 60138549 -95491571 - MER90a LTR ERV1 -18 596 492 1 1043 1062 275 25 4 chr4 60138549 60138830 -95491290 + B4A SINE B4 2 288 -4 1 1043 458 356 40 58 chr4 60138830 60138846 -95491274 - MER90a LTR ERV1 -123 491 481 1 1043 444 37 0 0 chr4 60138846 60138900 -95491220 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1043 458 356 40 58 chr4 60138900 60139101 -95491019 - MER90a LTR ERV1 -134 480 275 1 1043 320 391 30 6 chr4 60139139 60139306 -95490814 - MER90a LTR ERV1 -439 175 5 1 1043 308 103 0 17 chr4 60139661 60139720 -95490400 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 1 1043 402 239 0 0 chr4 60140019 60140153 -95489967 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1043 756 267 48 51 chr4 60140153 60140445 -95489675 - B4 SINE B4 0 292 2 1 1043 977 282 47 4 chr4 60140831 60141105 -95489015 + B4A SINE B4 2 287 -5 1 1043 22487 151 24 10 chr4 60141169 60144433 -95485687 - L1_Mus4 LINE L1 -1 6635 3307 1 1043 195 42 0 0 chr4 60144433 60144457 -95485663 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1043 22487 172 13 16 chr4 60144457 60147176 -95482944 - L1_Mus4 LINE L1 -2577 3306 613 1 1043 390 318 84 11 chr4 60147257 60147435 -95482685 - MER90a LTR ERV1 -200 375 185 1 1043 391 329 89 41 chr4 60147446 60147592 -95482528 - MER90a LTR ERV1 -450 164 12 1 1043 222 91 0 0 chr4 60151101 60151134 -95478986 + (CAA)n Simple_repeat Simple_repeat 3 35 0 1 1043 510 31 0 0 chr4 60151134 60151198 -95478922 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1043 182 302 48 0 chr4 60151690 60151753 -95478367 - MIR SINE MIR -106 156 91 1 1043 203 167 0 0 chr4 60152773 60152815 -95477305 + T-rich Low_complexity Low_complexity 1 42 0 1 1043 426 245 37 28 chr4 60153159 60153268 -95476852 - B3 SINE B2 0 216 107 1 1043 391 283 114 38 chr4 60153268 60153426 -95476694 + B3 SINE B2 39 208 -8 1 1043 237 402 39 14 chr4 60153638 60153838 -95476282 - MIR SINE MIR -52 216 4 1 1043 444 111 0 0 chr4 60154078 60154150 -95475970 + (TCC)n Simple_repeat Simple_repeat 1 72 0 1 1043 587 335 26 40 chr4 60154214 60154441 -95475679 - B4A SINE B4 -13 279 56 1 1043 337 350 8 16 chr4 60154412 60154534 -95475586 - B1F1 SINE Alu -28 121 1 1 1043 979 219 118 59 chr4 60155085 60155424 -95474696 + RLTR9A LTR ERVK 10 368 0 1 1043 22 35 0 0 chr4 60155731 60155760 -95474360 + AT_rich Low_complexity Low_complexity 1 29 0 1 1043 387 0 0 0 chr4 60155814 60155857 -95474263 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1043 615 206 28 66 chr4 60155857 60156039 -95474081 + RLTR45-int LTR ERVK 2092 2266 -4978 1 1043 243 0 0 0 chr4 60156046 60156073 -95474047 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1043 744 117 9 9 chr4 60156073 60156178 -95473942 - B1_Mm SINE Alu -8 139 34 2 1043 3979 175 39 26 chr4 60156178 60157099 -95473021 + ETnERV2-int LTR ERVK 1259 2191 -5215 2 1043 6450 253 33 52 chr4 60157199 60157744 -95472376 + RMER16-int LTR ERVK 2189 2532 -4874 2 1043 872 114 0 7 chr4 60157744 60157885 -95472235 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 2 1043 10526 180 60 44 chr4 60157885 60159255 -95470865 + RMER16-int LTR ERVK 1566 3931 -3475 2 1043 234 0 0 0 chr4 60159255 60159281 -95470839 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1043 10526 176 62 43 chr4 60159281 60160028 -95470092 + RMER16-int LTR ERVK 2862 3601 -1805 2 1043 962 117 0 14 chr4 60160028 60160167 -95469953 + B1_Mm SINE Alu 2 138 -9 2 1043 303 71 0 0 chr4 60160167 60160209 -95469911 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1043 10526 176 62 43 chr4 60160209 60160773 -95469347 + RMER16-int LTR ERVK 3602 4171 -1235 2 1043 26 0 0 0 chr4 60160856 60160882 -95469238 + AT_rich Low_complexity Low_complexity 1 26 0 2 1043 330 274 33 33 chr4 60161042 60161163 -95468957 + ETnERV2-int LTR ERVK 6305 6425 -981 2 1043 254 180 0 39 chr4 60161374 60161426 -95468694 + ETnERV2-int LTR ERVK 7335 7384 -22 2 1043 922 219 22 97 chr4 60161491 60161769 -95468351 + RLTR9A LTR ERVK 112 368 0 2 1044 775 235 66 5 chr4 60162387 60162584 -95467536 + B3 SINE B2 1 209 -7 2 1044 323 318 16 23 chr4 60162775 60162904 -95467216 - MLT1C LTR MaLR 0 467 340 2 1044 444 266 214 0 chr4 60163107 60163261 -95466859 - MT2A LTR ERVL 0 533 347 2 1044 195 42 0 0 chr4 60163297 60163321 -95466799 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 2 1044 399 21 0 0 chr4 60163454 60163502 -95466618 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1044 286 213 0 0 chr4 60163504 60163565 -95466555 + B1_Mus2 SINE Alu 42 102 -45 2 1044 189 0 0 0 chr4 60163565 60163586 -95466534 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 2 1044 200 196 0 0 chr4 60163645 60163691 -95466429 + (CAGC)n Simple_repeat Simple_repeat 2 47 0 2 1044 693 34 0 0 chr4 60163818 60163906 -95466214 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1044 639 159 0 0 chr4 60163906 60164019 -95466101 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 2 1044 262 206 0 31 chr4 60164046 60164111 -95466009 + B1_Mus2 SINE Alu 42 104 -43 2 1044 1854 160 63 109 chr4 60164154 60164721 -95465399 - RLTR45-int LTR ERVK -4612 2632 2092 2 1044 699 54 0 0 chr4 60164721 60164813 -95465307 + (TC)n Simple_repeat Simple_repeat 1 92 0 2 1044 228 130 0 0 chr4 60164858 60164904 -95465216 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 2 1044 842 259 11 85 chr4 60165224 60165507 -95464613 - RLTR9A LTR ERVK -5 363 102 2 1044 530 340 47 38 chr4 60166206 60166417 -95463703 + B4A SINE B4 67 279 -13 2 1044 230 209 0 29 chr4 60166492 60166561 -95463559 + GA-rich Low_complexity Low_complexity 2 68 0 2 1044 427 333 32 43 chr4 60166793 60166978 -95463142 + MIR SINE MIR 9 191 -71 2 1044 423 333 57 0 chr4 60167384 60167543 -95462577 - B3 SINE B2 -10 206 39 2 1044 430 296 19 0 chr4 60167543 60167651 -95462469 + B3 SINE B2 107 216 0 2 1044 279 0 0 0 chr4 60168126 60168157 -95461963 + (CTG)n Simple_repeat Simple_repeat 1 31 0 2 1044 187 267 105 13 chr4 60169025 60169101 -95461019 + MIR SINE MIR 74 156 -106 2 1044 220 380 0 0 chr4 60172416 60172487 -95457633 - AluF_3 SINE Alu -103 208 138 2 1044 431 306 232 42 chr4 60173093 60173451 -95456669 + MER90a LTR ERV1 12 437 -177 2 1044 19180 162 97 13 chr4 60173561 60178407 -95451713 + L1_Mus4 LINE L1 1354 6633 -3 2 1044 1104 274 47 4 chr4 60178489 60178764 -95451356 - B4A SINE B4 -4 288 2 2 1044 741 261 30 126 chr4 60179145 60179440 -95450680 + B4 SINE B4 2 269 -23 2 1044 480 48 0 0 chr4 60179440 60179503 -95450617 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1044 194 180 0 16 chr4 60179814 60179876 -95450244 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 2 1044 306 357 44 19 chr4 60180236 60180396 -95449724 + MER90a LTR ERV1 12 175 -439 2 1044 311 362 36 30 chr4 60180426 60180594 -95449526 + MER90a LTR ERV1 269 437 -177 2 1044 834 83 0 0 chr4 60180635 60180755 -95449365 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1044 900 300 36 14 chr4 60180771 60181052 -95449068 - B4A SINE B4 -4 288 2 2 1044 381 291 9 46 chr4 60181331 60181439 -95448681 + B4 SINE B4 2 105 -187 2 1044 348 221 0 0 chr4 60181464 60181532 -95448588 - L1VL2 LINE L1 -5584 751 684 2 1044 4181 95 24 27 chr4 60181532 60182168 -95447952 + MMETn-int LTR ERVK 2524 3157 -1687 2 1044 6521 143 21 2 chr4 60182253 60183217 -95446903 + ETnERV2-int LTR ERVK 6222 7203 -203 2 1044 282 247 367 11 chr4 60183220 60183496 -95446624 + RLTR13B1 LTR ERVK 155 531 -371 2 1044 504 100 23 70 chr4 60183496 60183582 -95446538 + ETnERV2-int LTR ERVK 7324 7405 -1 2 1044 1098 208 25 135 chr4 60183582 60183944 -95446176 + RLTRETN_Mm LTR ERVK 1 322 0 2 1044 2631 141 5 0 chr4 60183944 60184347 -95445773 - L1VL4 LINE L1 -5684 618 214 2 1044 3221 190 152 28 chr4 60184342 60185204 -95444916 - L1_Mur2 LINE L1 -2384 3496 2528 2 1044 1629 184 28 9 chr4 60185205 60185529 -95444591 - L1_Mur2 LINE L1 -5941 1145 816 2 1044 226 273 62 93 chr4 60185551 60185745 -95444375 - L1_Mur2 LINE L1 -6375 711 524 2 1044 967 154 58 187 chr4 60185750 60186093 -95444027 + MERVL_2A-int LTR ERVL 5463 5761 0 2 1044 936 234 199 105 chr4 60186093 60186386 -95443734 + MT2A LTR ERVL 1 259 -274 2 1044 2236 136 6 3 chr4 60186386 60186719 -95443401 - L1_Mus2 LINE L1 0 6566 6233 2 1044 936 234 199 105 chr4 60186719 60186912 -95443208 + MT2A LTR ERVL 260 532 -1 2 1044 641 210 16 16 chr4 60187307 60187428 -95442692 - B3 SINE B2 -95 121 1 2 1044 1015 243 29 0 chr4 60187466 60187676 -95442444 - B3 SINE B2 0 216 1 2 1044 441 81 0 0 chr4 60188585 60188647 -95441473 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1044 2426 202 33 72 chr4 60188902 60190371 -95439749 - L1Md_F LINE L1 -4384 1499 261 2 1044 941 122 20 0 chr4 60190397 60190544 -95439576 - L1_Mm LINE L1 -942 4941 4792 2 1044 12503 113 39 66 chr4 60190547 60192236 -95437884 + L1_Mus1 LINE L1 3818 5453 -430 2 1044 7269 97 12 13 chr4 60192236 60193220 -95436900 + L1Md_F2 LINE L1 5588 6570 -12 2 1044 12503 83 11 12 chr4 60193220 60194212 -95435908 + L1_Mus1 LINE L1 5454 6443 -124 2 1044 2799 103 29 27 chr4 60194213 60194623 -95435497 + RLTR10A LTR ERVK 1 411 0 2 1044 1629 178 93 49 chr4 60194623 60195204 -95434916 + IAP-d-int LTR ERVK 55 606 -1381 2 1044 2065 57 117 6 chr4 60195204 60195673 -95434447 + IAP-d-int LTR ERVK 5007 5527 -1015 2 1044 2105 68 141 3 chr4 60195677 60195989 -95434131 + IAP-d-int LTR ERVK 5667 6021 -521 2 1044 5193 72 19 14 chr4 60195999 60196701 -95433419 + RLTR10-int LTR ERVK 1282 1986 -1 2 1044 2318 115 119 32 chr4 60196701 60197079 -95433041 + RLTR10A LTR ERVK 1 411 0 2 1044 722 72 140 18 chr4 60197079 60197193 -95432927 + L1_Mus2 LINE L1 6438 6565 -1 2 1044 1614 47 0 30 chr4 60197203 60197402 -95432718 + B2_Mm1a SINE B2 1 193 0 2 1044 450 200 0 0 chr4 60197898 60197984 -95432136 + MTA_Mm LTR MaLR 13 98 -321 2 1044 1212 58 7 0 chr4 60197990 60198145 -95431975 + MTA_Mm LTR MaLR 207 362 -34 2 1044 10915 3 0 0 chr4 60198145 60199337 -95430783 + L1Md_A LINE L1 4395 5586 -297 2 1044 9600 4 0 0 chr4 60199337 60200333 -95429787 + L1Md_A LINE L1 5587 6582 0 2 1044 1517 48 5 0 chr4 60200374 60200563 -95429557 + MTA_Mm LTR MaLR 207 396 0 2 1044 398 241 13 0 chr4 60200563 60200642 -95429478 - B3A SINE B2 -118 80 1 2 1044 236 237 83 102 chr4 60200794 60200902 -95429218 - MamSINE1 SINE tRNA -170 120 15 2 1044 225 289 53 0 chr4 60201836 60201912 -95428208 + MADE2 DNA Mariner 1 80 0 2 1044 1002 254 170 40 chr4 60202298 60202651 -95427469 + MTD LTR MaLR 14 412 -7 2 1044 608 160 8 8 chr4 60202825 60202945 -95427175 - URR1B DNA MER1_type -4 221 102 2 1044 7187 83 16 6 chr4 60202945 60204217 -95425903 - L1Md_F2 LINE L1 -14 6568 5289 2 1044 26 0 0 0 chr4 60204217 60204243 -95425877 + AT_rich Low_complexity Low_complexity 1 26 0 2 1044 3877 45 11 0 chr4 60204243 60204687 -95425433 - L1Md_F3 LINE L1 -4 6580 6132 2 1044 1830 160 19 9 chr4 60204687 60205002 -95425118 + RLTR46 LTR ERVK 1 318 -2 2 1044 272 206 55 0 chr4 60205123 60205196 -95424924 + IAPEY3-int LTR ERVK 840 916 -5905 2 1044 598 173 91 0 chr4 60205274 60205384 -95424736 + IAPEY3-int LTR ERVK 940 1059 -6621 2 1044 609 146 304 19 chr4 60205898 60206088 -95424032 + RMER16-int LTR ERVK 435 633 -4773 2 1044 349 123 18 0 chr4 60206150 60206207 -95423913 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 1044 1395 102 383 11 chr4 60206208 60206581 -95423539 + MMERVK10C-int LTR ERVK 1885 2396 -5185 2 1044 21831 98 35 1 chr4 60206575 60211126 -95418994 + MMERVK10C-int LTR ERVK 2524 7227 -354 2 1044 2122 52 14 29 chr4 60211121 60211396 -95418724 + MMERVK10C-int LTR ERVK 7410 7680 0 2 1044 1721 173 25 13 chr4 60211396 60211712 -95418408 + RLTR46 LTR ERVK 1 320 0 2 1044 1425 42 0 0 chr4 60211712 60211878 -95418242 - L1Md_F3 LINE L1 -447 6137 5972 2 1044 17743 123 233 4 chr4 60211867 60214252 -95415868 - L1Md_F LINE L1 -568 5315 2176 2 1044 4752 151 11 64 chr4 60214252 60215099 -95415021 - RLTR13B4 LTR ERVK -1 802 1 2 1044 17743 144 183 6 chr4 60215099 60216947 -95413173 - L1Md_F LINE L1 -3708 2175 206 2 1044 587 111 0 11 chr4 60216950 60217041 -95413079 + RMER16-int LTR ERVK 2893 2982 -2424 2 1044 828 241 73 5 chr4 60217340 60217532 -95412588 + B3 SINE B2 1 205 -11 2 1044 467 277 13 39 chr4 60217726 60217880 -95412240 - MLT1B LTR MaLR 0 390 241 2 1044 1018 128 6 0 chr4 60217893 60218049 -95412071 + L1_Mus2 LINE L1 6410 6566 0 2 1044 685 208 37 197 chr4 60218076 60218345 -95411775 - MT2A LTR ERVL -307 226 1 2 1044 695 162 59 0 chr4 60218345 60218481 -95411639 - MERVL_2A-int LTR ERVL 0 5761 5618 2 1044 872 164 98 10 chr4 60218485 60218688 -95411432 - MERVL_2A-int LTR ERVL -78 5683 5463 2 1044 245 281 30 23 chr4 60218744 60218875 -95411245 + L1_Mur2 LINE L1 579 710 -6376 2 1044 1613 183 56 6 chr4 60218882 60219201 -95410919 + L1_Mur2 LINE L1 816 1150 -5936 2 1044 3995 164 147 28 chr4 60219188 60220074 -95410046 + L1_Mur2 LINE L1 2501 3491 -2386 2 1044 2241 136 0 3 chr4 60220067 60220406 -95409714 + L1VL4 LINE L1 214 551 -5751 2 1044 878 181 35 20 chr4 60220406 60220587 -95409533 + RLTR9D LTR ERVK 121 398 -5 2 1044 645 165 16 8 chr4 60220600 60220722 -95409398 + L1VL4 LINE L1 575 697 -5605 2 1044 421 301 10 0 chr4 60220745 60220848 -95409272 - B4 SINE B4 -187 105 2 2 1044 388 349 46 64 chr4 60221116 60221225 -95408895 - MER90a LTR ERV1 -18 596 492 2 1044 1189 265 29 4 chr4 60221225 60221505 -95408615 + B4A SINE B4 2 288 -4 2 1044 388 349 46 64 chr4 60221505 60221521 -95408599 - MER90a LTR ERV1 -123 491 481 2 1044 516 32 0 0 chr4 60221521 60221583 -95408537 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1044 388 349 46 64 chr4 60221583 60221784 -95408336 - MER90a LTR ERV1 -134 480 275 2 1044 308 103 0 17 chr4 60222344 60222403 -95407717 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 2 1044 297 254 0 0 chr4 60222702 60222816 -95407304 + (TG)n Simple_repeat Simple_repeat 1 114 0 2 1044 800 259 45 48 chr4 60222816 60223108 -95407012 - B4 SINE B4 0 292 2 2 1044 977 282 47 4 chr4 60223494 60223768 -95406352 + B4A SINE B4 2 287 -5 2 1044 22256 163 16 18 chr4 60223831 60229865 -95400255 - L1_Mus4 LINE L1 -1 6635 613 2 1044 432 307 84 11 chr4 60229946 60230124 -95399996 - MER90 LTR ERV1 -200 375 185 2 1044 400 321 89 41 chr4 60230135 60230281 -95399839 - MER90 LTR ERV1 -450 164 12 2 1044 252 378 11 0 chr4 60230882 60230972 -95399148 + FAM SINE Alu 137 227 -84 2 1044 323 23 0 22 chr4 60233784 60233790 -95396330 + (CA)n Simple_repeat Simple_repeat 2 7 0 2 1044 324 70 0 0 chr4 60233790 60233833 -95396287 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 1044 323 23 0 22 chr4 60233833 60233871 -95396249 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1044 187 284 135 0 chr4 60234373 60234447 -95395673 - MIR SINE MIR -106 156 73 3 1044 468 217 37 28 chr4 60235831 60235940 -95394180 - B3 SINE B2 0 216 107 3 1044 407 276 114 38 chr4 60235940 60236098 -95394022 + B3 SINE B2 39 208 -8 3 1044 277 382 36 12 chr4 60236516 60236683 -95393437 - MIR SINE MIR -88 174 4 3 1044 368 118 15 0 chr4 60236923 60236991 -95393129 + (TCC)n Simple_repeat Simple_repeat 1 69 0 3 1044 657 325 25 42 chr4 60237042 60237283 -95392837 - B4A SINE B4 0 292 56 3 1044 367 325 8 17 chr4 60237254 60237373 -95392747 - B1F1 SINE Alu -28 121 4 3 1044 975 224 112 50 chr4 60237927 60238265 -95391855 + RLTR9A LTR ERVK 10 368 0 3 1044 215 0 67 0 chr4 60238580 60238610 -95391510 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1044 363 23 0 0 chr4 60238664 60238708 -95391412 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1044 588 212 28 66 chr4 60238708 60238890 -95391230 + RLTR45-int LTR ERVK 2092 2266 -4978 3 1044 786 116 9 0 chr4 60238907 60239019 -95391101 - B1_Mm SINE Alu -1 146 34 3 1044 4002 175 30 31 chr4 60239019 60239953 -95390167 + ETnERV2-int LTR ERVK 1259 2191 -5215 3 1044 6533 244 23 61 chr4 60240053 60240635 -95389485 + RMER16-int LTR ERVK 1415 2546 -4860 3 1044 1230 87 0 0 chr4 60240635 60240808 -95389312 + (TC)n Simple_repeat Simple_repeat 2 174 0 3 1044 7989 178 59 37 chr4 60240808 60242863 -95387257 + RMER16-int LTR ERVK 1566 4094 -3312 3 1044 23 0 0 0 chr4 60242960 60242983 -95387137 + AT_rich Low_complexity Low_complexity 1 23 0 3 1044 330 274 33 33 chr4 60243143 60243264 -95386856 + RMER16-int LTR ERVK 6305 6425 -981 3 1044 911 223 22 97 chr4 60243591 60243869 -95386251 + RLTR9A LTR ERVK 112 368 0 3 1044 718 250 66 5 chr4 60244487 60244684 -95385436 + B3 SINE B2 1 209 -7 3 1044 348 292 24 24 chr4 60244875 60244998 -95385122 - MLT1B LTR MaLR 0 390 268 3 1044 484 247 214 0 chr4 60245207 60245361 -95384759 - MT2A LTR ERVL 0 533 347 3 1044 195 42 0 0 chr4 60245398 60245422 -95384698 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 1044 219 36 0 0 chr4 60245480 60245508 -95384612 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 3 1044 492 32 0 0 chr4 60245558 60245620 -95384500 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1044 265 197 0 0 chr4 60245622 60245683 -95384437 + B1_Mus2 SINE Alu 42 102 -45 3 1044 240 35 0 0 chr4 60245683 60245712 -95384408 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 3 1044 222 105 0 0 chr4 60245928 60245966 -95384154 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1044 639 159 0 0 chr4 60245966 60246079 -95384041 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 3 1044 295 175 0 31 chr4 60246142 60246207 -95383913 + B1_Mus2 SINE Alu 42 104 -43 3 1044 1844 164 67 94 chr4 60246250 60246802 -95383318 - RLTR45-int LTR ERVK -4612 2632 2096 3 1044 831 46 0 0 chr4 60246802 60246910 -95383210 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 1044 228 130 0 0 chr4 60246955 60247001 -95383119 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 3 1044 793 266 11 85 chr4 60247321 60247604 -95382516 - RLTR9A LTR ERVK -5 363 102 3 1044 267 347 25 8 chr4 60248195 60248314 -95381806 + B1F1 SINE Alu 1 121 -28 3 1044 536 346 38 28 chr4 60248301 60248512 -95381608 + B4A SINE B4 67 279 -13 3 1044 257 200 0 28 chr4 60248587 60248659 -95381461 + GA-rich Low_complexity Low_complexity 2 71 0 3 1044 467 322 32 43 chr4 60248892 60249077 -95381043 + MIR SINE MIR 9 191 -71 3 1044 426 333 57 0 chr4 60249483 60249642 -95380478 - B3 SINE B2 -10 206 39 3 1044 423 306 19 0 chr4 60249642 60249750 -95380370 + B3 SINE B2 107 216 0 3 1044 180 0 0 0 chr4 60251677 60251697 -95378423 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1044 24550 14 1 0 chr4 60252412 60255376 -95374744 + L1Md_A LINE L1 2619 5586 -297 3 1044 8832 13 0 1 chr4 60255376 60256373 -95373747 + L1Md_A LINE L1 5587 6582 0 3 1044 244 367 3 0 chr4 60258489 60258570 -95371550 - AluF_3 SINE Alu -103 208 138 3 1044 455 323 229 39 chr4 60259177 60259535 -95370585 + MER90a LTR ERV1 12 437 -177 3 1044 20177 166 33 11 chr4 60259645 60264804 -95365316 + L1_Mus4 LINE L1 1354 6633 -3 3 1044 957 277 47 4 chr4 60264888 60265163 -95364957 - B4A SINE B4 -4 288 2 3 1044 719 261 25 110 chr4 60265546 60265864 -95364256 + B4 SINE B4 2 292 0 3 1044 447 148 0 0 chr4 60265864 60265952 -95364168 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1044 296 119 0 17 chr4 60266264 60266324 -95363796 + (CCCTAA)n Simple_repeat Simple_repeat 3 61 0 3 1044 361 331 62 38 chr4 60266686 60266846 -95363274 + MER90a LTR ERV1 12 175 -439 3 1044 378 329 90 12 chr4 60266876 60267042 -95363078 + MER90a LTR ERV1 269 447 -167 3 1044 751 307 43 14 chr4 60267134 60267412 -95362708 - B4A SINE B4 -5 287 2 3 1044 417 272 9 46 chr4 60267691 60267799 -95362321 + B4 SINE B4 2 105 -187 3 1044 328 206 0 0 chr4 60267824 60267892 -95362228 - L1VL4 LINE L1 -5607 695 628 3 1044 417 97 0 0 chr4 60267922 60267984 -95362136 - B2_Mm2 SINE B2 -93 102 41 3 1044 1907 78 0 44 chr4 60267986 60268283 -95361837 + MMETn-int LTR ERVK 2858 3141 -1703 3 1044 6087 144 21 2 chr4 60268384 60269348 -95360772 + ETnERV2-int LTR ERVK 6222 7203 -203 3 1044 338 233 370 10 chr4 60269351 60269627 -95360493 + RLTR13D6 LTR ERVK 155 531 -371 3 1044 432 80 25 74 chr4 60269630 60269711 -95360409 + ETnERV2-int LTR ERVK 7327 7403 -3 3 1044 1041 195 25 140 chr4 60269713 60270077 -95360043 + RLTRETN_Mm LTR ERVK 1 322 0 3 1044 2547 134 8 0 chr4 60270077 60270479 -95359641 - L1VL4 LINE L1 -5684 618 214 3 1044 3698 146 154 18 chr4 60270487 60271337 -95358783 - L1_Mur2 LINE L1 -2395 3482 2517 3 1044 1547 180 27 15 chr4 60271336 60271668 -95358452 - L1_Mur2 LINE L1 -5940 1146 811 3 1044 716 192 96 5 chr4 60271881 60272090 -95358030 + MERVL_2A-int LTR ERVL 5463 5690 -71 3 1044 231 209 86 43 chr4 60272098 60272168 -95357952 + ORR1A3-int LTR MaLR 567 639 -1324 3 1044 981 223 211 119 chr4 60272224 60272518 -95357602 + MT2A LTR ERVL 1 253 -280 3 1044 2181 126 3 3 chr4 60272518 60272852 -95357268 - L1_Mus2 LINE L1 0 6566 6233 3 1044 981 223 211 119 chr4 60272852 60273045 -95357075 + MT2A LTR ERVL 254 533 0 3 1044 715 215 0 0 chr4 60273439 60273560 -95356560 - B3 SINE B2 -95 121 1 3 1044 1029 244 5 0 chr4 60273604 60273813 -95356307 - B3 SINE B2 -6 210 1 3 1044 283 256 128 70 chr4 60274719 60274891 -95355229 - B3A SINE B2 -15 183 2 3 1044 2357 142 12 62 chr4 60275002 60275789 -95354331 - L1VL4 LINE L1 -4386 1497 757 3 1044 453 255 21 7 chr4 60275812 60275954 -95354166 - L1VL4 LINE L1 -5796 820 677 3 1044 573 282 26 111 chr4 60276012 60276472 -95353648 - L1VL1 LINE L1 -6022 400 39 3 1044 899 110 21 0 chr4 60276498 60276643 -95353477 - L1_Mm LINE L1 -942 4941 4794 3 1044 1247 73 18 0 chr4 60276672 60276919 -95353201 + L1VL1 LINE L1 941 1197 -2501 3 1044 405 267 21 56 chr4 60276921 60277188 -95352932 - L1VL1 LINE L1 -6027 395 87 3 1044 938 109 20 0 chr4 60277272 60277419 -95352701 - L1_Mm LINE L1 -942 4941 4792 3 1044 14250 112 2 4 chr4 60277422 60278988 -95351132 + L1_Mus3 LINE L1 3818 5386 -497 3 1044 4904 148 57 15 chr4 60278988 60279908 -95350212 + RLTR13A2 LTR ERVK 1 958 0 3 1044 14250 131 64 2 chr4 60279908 60281059 -95349061 + L1_Mus3 LINE L1 5387 6636 -2 3 1044 1948 124 3 9 chr4 60281276 60281594 -95348526 - IAPLTR2b LTR ERVK -11 316 1 3 1044 4540 97 30 23 chr4 60281594 60282258 -95347862 - IAPEz-int LTR ERVK 0 6481 5813 3 1044 36201 76 37 12 chr4 60282256 60287064 -95343056 - IAPEz-int LTR ERVK -1057 5424 497 3 130 39135 55 1 17 chr4 60287115 60293145 -95336975 - L1Md_F2 LINE L1 -460 6122 196 3 1045 381 221 0 0 chr4 60293157 60293234 -95336886 + MTA_Mm LTR MaLR 13 89 -332 3 1045 1432 61 0 25 chr4 60293237 60293440 -95336680 + MTA_Mm LTR MaLR 199 396 0 3 1045 377 215 13 0 chr4 60293440 60293519 -95336601 - B3A SINE B2 -118 80 1 3 1045 408 20 0 0 chr4 60295783 60295832 -95334288 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1045 226 320 0 74 chr4 60295863 60295971 -95334149 - B3A SINE B2 -96 102 3 3 1045 858 271 169 45 chr4 60296572 60296927 -95333193 + MTD LTR MaLR 14 412 -7 3 1045 559 168 8 8 chr4 60297102 60297222 -95332898 - URR1B DNA MER1_type -4 221 102 3 1045 7192 85 14 3 chr4 60297222 60298494 -95331626 - L1Md_F2 LINE L1 -13 6569 5289 3 1045 23 0 0 0 chr4 60298494 60298517 -95331603 + AT_rich Low_complexity Low_complexity 1 23 0 3 1045 3618 41 23 2 chr4 60298517 60298956 -95331164 - L1Md_F3 LINE L1 -5 6579 6132 3 1045 1828 153 19 19 chr4 60298956 60299276 -95330844 + RLTR46 LTR ERVK 1 320 0 3 1045 280 221 52 0 chr4 60299391 60299468 -95330652 + IAPEY3-int LTR ERVK 836 916 -5905 3 1045 393 151 137 0 chr4 60299546 60299619 -95330501 + IAPEY3-int LTR ERVK 940 1022 -6658 3 1045 624 155 191 39 chr4 60300154 60300344 -95329776 + RMER16-int LTR ERVK 435 637 -4769 3 1045 348 123 18 0 chr4 60300406 60300463 -95329657 + MMERVK10C-int LTR ERVK 1089 1146 -4260 3 1045 1387 110 383 11 chr4 60300464 60300837 -95329283 + MMERVK10C-int LTR ERVK 1885 2396 -5185 3 1045 11817 86 60 2 chr4 60300831 60302638 -95327482 + MMERVK10C-int LTR ERVK 2524 4436 -3145 3 1045 4668 139 41 48 chr4 60302639 60303544 -95326576 + L1Md_F LINE L1 307 1205 -5411 3 1045 15357 48 0 0 chr4 60303550 60305487 -95324633 + L1Md_F LINE L1 1170 3106 -2777 3 1045 288 0 0 0 chr4 60305489 60305521 -95324599 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1045 570 41 0 0 chr4 60305577 60305650 -95324470 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1045 700 200 28 66 chr4 60305650 60305832 -95324288 + RLTR45-int LTR ERVK 2092 2266 -4978 3 1045 207 0 0 0 chr4 60305850 60305873 -95324247 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1045 760 109 9 0 chr4 60305873 60305983 -95324137 - B1_Mm SINE Alu -3 144 34 3 1045 4415 174 29 31 chr4 60305983 60306918 -95323202 + ETnERV2-int LTR ERVK 1259 2191 -5215 3 1045 6551 263 23 61 chr4 60307018 60307564 -95322556 + RMER16-int LTR ERVK 2339 2532 -4874 3 1045 477 50 0 0 chr4 60307564 60307624 -95322496 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1045 11452 180 57 44 chr4 60307624 60309757 -95320363 + RMER16-int LTR ERVK 1566 4093 -3313 3 1045 984 109 0 14 chr4 60309757 60309896 -95320224 + B1_Mm SINE Alu 2 138 -9 3 1045 336 48 0 0 chr4 60309896 60309938 -95320182 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1045 11452 178 58 44 chr4 60309938 60310505 -95319615 + RMER16-int LTR ERVK 3603 4175 -1231 3 1045 25 0 0 0 chr4 60310587 60310612 -95319508 + AT_rich Low_complexity Low_complexity 1 25 0 3 1045 376 267 33 33 chr4 60310774 60310894 -95319226 + ETnERV2-int LTR ERVK 6306 6425 -981 3 1045 768 227 22 97 chr4 60311222 60311500 -95318620 + RLTR9A LTR ERVK 112 368 0 4 1045 775 235 66 5 chr4 60312118 60312315 -95317805 + B3 SINE B2 1 209 -7 4 1045 310 292 24 24 chr4 60312506 60312629 -95317491 - MLT1B LTR MaLR 0 390 268 4 1045 335 281 129 5 chr4 60312839 60312999 -95317121 - MT2A LTR ERVL -2 582 347 4 1045 186 43 0 0 chr4 60313028 60313051 -95317069 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 4 1045 438 65 0 0 chr4 60313184 60313246 -95316874 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1045 258 213 0 0 chr4 60313254 60313315 -95316805 + B1_Mus2 SINE Alu 42 102 -45 4 1045 261 0 0 0 chr4 60313315 60313344 -95316776 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 4 1045 249 109 0 0 chr4 60313403 60313449 -95316671 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 4 1045 693 53 0 0 chr4 60313576 60313670 -95316450 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1045 639 159 0 0 chr4 60313670 60313783 -95316337 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 4 1045 231 317 0 0 chr4 60313786 60313868 -95316252 + G-rich Low_complexity Low_complexity 6 87 0 4 1045 281 164 0 0 chr4 60313870 60313925 -95316195 + B1_Mus2 SINE Alu 42 96 -51 4 1045 2106 171 67 93 chr4 60313978 60314534 -95315586 - RLTR45-int LTR ERVK -4612 2632 2092 4 1045 561 15 0 0 chr4 60314534 60314600 -95315520 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1045 228 130 0 0 chr4 60314645 60314691 -95315429 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 4 1045 713 263 11 85 chr4 60315011 60315294 -95314826 - RLTR9A LTR ERVK -5 363 102 4 1045 256 322 25 17 chr4 60315886 60316006 -95314114 + B1F1 SINE Alu 1 121 -28 4 1045 508 332 38 28 chr4 60315993 60316204 -95313916 + B4A SINE B4 67 279 -13 4 1045 186 191 0 0 chr4 60316305 60316347 -95313773 + GA-rich Low_complexity Low_complexity 3 44 0 4 1045 367 328 32 43 chr4 60316579 60316764 -95313356 + MIR SINE MIR 9 191 -71 4 1045 337 333 56 12 chr4 60317170 60317331 -95312789 - B3 SINE B2 -10 206 39 4 1045 381 306 19 0 chr4 60317331 60317439 -95312681 + B3 SINE B2 107 216 0 4 1045 6681 129 27 2 chr4 60318098 60319391 -95310729 + L1_Mus4 LINE L1 5307 6633 -3 4 1045 934 277 47 4 chr4 60319473 60319748 -95310372 - B4A SINE B4 -4 288 2 4 1045 452 304 15 72 chr4 60320229 60320424 -95309696 + B4 SINE B4 86 269 -23 4 1045 477 34 0 0 chr4 60320424 60320483 -95309637 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1045 194 180 0 16 chr4 60320794 60320856 -95309264 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 4 1045 264 357 44 19 chr4 60321216 60321376 -95308744 + MER90a LTR ERV1 12 175 -439 4 1045 613 265 0 0 chr4 60371883 60372015 -95258105 - B3 SINE B2 -84 132 1 4 1045 887 248 29 0 chr4 60372053 60372259 -95257861 - B3 SINE B2 0 216 5 4 1045 405 86 0 0 chr4 60373172 60373230 -95256890 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1045 2479 197 32 68 chr4 60373484 60374955 -95255165 - L1Md_F LINE L1 -4384 1499 261 4 1045 939 112 21 0 chr4 60374981 60375124 -95254996 - L1_Mm LINE L1 -942 4941 4796 4 1045 345 320 98 26 chr4 60375131 60375510 -95254610 - Arthur1 DNA Tip100 -95 3852 3447 4 1045 399 141 11 68 chr4 60375919 60376109 -95254011 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1045 439 138 28 28 chr4 60376212 60376354 -95253766 + (TG)n Simple_repeat Simple_repeat 1 142 0 4 1045 28 29 0 0 chr4 60376476 60376511 -95253609 + AT_rich Low_complexity Low_complexity 1 35 0 4 1045 1586 74 0 0 chr4 60376724 60376926 -95253194 + L1Md_F2 LINE L1 5384 5585 -298 4 1045 6998 87 21 6 chr4 60376927 60377898 -95252222 + L1Md_F2 LINE L1 5587 6571 -11 4 1045 5756 138 30 6 chr4 60377898 60378990 -95251130 + L1Md_F2 LINE L1 5453 6582 0 4 1045 1941 127 3 9 chr4 60379194 60379512 -95250608 - IAPLTR2b LTR ERVK -11 316 1 4 1045 4598 87 33 26 chr4 60379512 60380176 -95249944 - IAPEz-int LTR ERVK 0 6481 5813 4 1045 28811 105 32 19 chr4 60380244 60384983 -95245137 - IAPEz-int LTR ERVK -2202 5478 497 4 1045 34514 45 1 17 chr4 60385034 60390856 -95239264 - L1Md_F2 LINE L1 -460 6122 399 4 1045 405 221 0 0 chr4 60390868 60390945 -95239175 + MTA_Mm LTR MaLR 13 89 -332 4 1045 1514 61 0 25 chr4 60390948 60391151 -95238969 + MTA_Mm LTR MaLR 199 396 0 4 1045 405 215 13 0 chr4 60391151 60391230 -95238890 - B3A SINE B2 -118 80 1 4 1045 227 237 83 102 chr4 60391383 60391491 -95238629 - MamSINE1 SINE tRNA -170 120 15 4 1045 405 0 0 0 chr4 60393497 60393542 -95236578 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1045 257 320 0 74 chr4 60393573 60393681 -95236439 - B3A SINE B2 -96 102 3 4 1045 230 267 66 13 chr4 60393815 60393891 -95236229 + MADE2 DNA Mariner 1 80 0 4 1045 978 276 140 26 chr4 60394281 60394630 -95235490 + MTD LTR MaLR 12 400 -19 4 1045 613 160 8 8 chr4 60394811 60394931 -95235189 - URR1B DNA MER1_type -4 221 102 4 1045 7151 82 15 5 chr4 60394931 60396205 -95233915 - L1Md_F2 LINE L1 -13 6569 5289 4 1045 26 0 0 0 chr4 60396205 60396231 -95233889 + AT_rich Low_complexity Low_complexity 1 26 0 4 1045 3830 47 11 2 chr4 60396231 60396676 -95233444 - L1Md_F3 LINE L1 -4 6580 6132 4 1045 1894 150 19 9 chr4 60396676 60396993 -95233127 + RLTR46 LTR ERVK 1 320 0 4 1045 259 219 55 0 chr4 60397112 60397185 -95232935 + IAPEY3-int LTR ERVK 840 916 -5905 4 1045 647 136 91 0 chr4 60397263 60397373 -95232747 + IAPEY3-int LTR ERVK 940 1059 -6621 4 1045 621 165 186 40 chr4 60397887 60398064 -95232056 + MMERVK10C-int LTR ERVK 435 637 -4769 4 1045 349 123 18 0 chr4 60398139 60398196 -95231924 + MMERVK10C-int LTR ERVK 1089 1146 -4260 4 1045 1402 131 122 0 chr4 60398197 60398434 -95231686 + MMERVK10C-int LTR ERVK 1885 2150 -5431 4 1045 914 57 78 31 chr4 60398442 60398570 -95231550 + MMERVK10C-int LTR ERVK 2263 2396 -5185 4 1045 21511 100 44 3 chr4 60398564 60403341 -95226779 + MMERVK10C-int LTR ERVK 2524 7513 0 4 1045 1740 176 22 13 chr4 60403341 60403658 -95226462 + RLTR46 LTR ERVK 1 320 0 4 1045 1431 36 0 0 chr4 60403658 60403824 -95226296 - L1Md_F3 LINE L1 -447 6137 5972 4 1045 13500 160 127 7 chr4 60403822 60406201 -95223919 - L1Md_F LINE L1 -579 5298 2170 4 1045 4798 149 11 64 chr4 60406201 60407048 -95223072 - RLTR13B4 LTR ERVK -1 802 1 4 1045 13500 135 65 7 chr4 60407048 60408895 -95221225 - L1Md_F LINE L1 -3708 2175 206 4 1045 562 122 0 11 chr4 60408898 60408989 -95221131 + RMER16-int LTR ERVK 2893 2982 -2424 4 1045 861 230 73 5 chr4 60409289 60409481 -95220639 + B3 SINE B2 1 205 -11 4 1045 484 254 26 52 chr4 60409675 60409829 -95220291 - MLT1B LTR MaLR 0 390 241 4 1045 1011 140 0 0 chr4 60409842 60409999 -95220121 + L1_Mus2 LINE L1 6410 6566 0 4 1045 671 206 38 199 chr4 60410028 60410295 -95219825 - MT2A LTR ERVL -309 224 1 4 1045 706 170 57 0 chr4 60410295 60410436 -95219684 - MERVL_2A-int LTR ERVL 0 5761 5613 4 1045 864 164 98 10 chr4 60410435 60410638 -95219482 - MERVL_2A-int LTR ERVL -78 5683 5463 4 1045 248 281 30 23 chr4 60410694 60410825 -95219295 + L1_Mur2 LINE L1 205 336 -6376 4 1045 1645 177 56 6 chr4 60410832 60411151 -95218969 + L1_Mur2 LINE L1 442 776 -5936 4 1045 3033 215 152 27 chr4 60411124 60412018 -95218102 + MusHAL1 LINE L1 1292 2297 -415 4 1045 2430 123 0 3 chr4 60412014 60412371 -95217749 + L1VL4 LINE L1 214 569 -5733 4 1045 900 155 19 19 chr4 60412376 60412534 -95217586 + RLTR9D LTR ERVK 241 398 -5 4 1045 645 165 16 8 chr4 60412547 60412669 -95217451 + L1VL4 LINE L1 575 697 -5605 4 1045 451 282 10 0 chr4 60412692 60412795 -95217325 - B4 SINE B4 -187 105 2 4 1045 919 319 28 14 chr4 60413069 60413352 -95216768 + B4A SINE B4 2 288 -4 4 1045 462 65 0 0 chr4 60413368 60413430 -95216690 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1045 341 325 48 42 chr4 60413471 60413638 -95216482 - MER90a LTR ERV1 -177 437 270 4 1045 309 388 36 12 chr4 60413669 60413836 -95216284 - MER90a LTR ERV1 -439 175 5 4 1045 308 103 0 17 chr4 60414180 60414239 -95215881 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 4 1045 492 227 0 0 chr4 60414538 60414688 -95215432 + (TG)n Simple_repeat Simple_repeat 1 150 0 4 1045 897 258 55 58 chr4 60414688 60414980 -95215140 - B4 SINE B4 0 292 2 4 1045 1059 281 46 18 chr4 60415366 60415649 -95214471 + B4A SINE B4 2 292 0 4 1045 17634 151 26 8 chr4 60415704 60418969 -95211151 - L1_Mus4 LINE L1 -1 6635 3307 4 1045 396 0 0 0 chr4 60418969 60419013 -95211107 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1045 17634 169 14 11 chr4 60419013 60419746 -95210374 - L1_Mus4 LINE L1 -2577 3306 2575 4 1045 2819 144 23 31 chr4 60419746 60420225 -95209895 + IAPLTR2_Mm LTR ERVK 1 475 0 4 130 58906 12 1 8 chr4 60420225 60426744 -95203376 + IAPEz-int LTR ERVK 8 6481 0 4 1046 2788 114 6 126 chr4 60426744 60427284 -95202836 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1046 8118 137 12 33 chr4 60427288 60429291 -95200829 - MusHAL1 LINE L1 -1341 2012 52 4 1046 378 318 84 11 chr4 60429372 60429550 -95200570 - MER90a LTR ERV1 -200 375 185 4 1046 387 329 89 41 chr4 60429561 60429707 -95200413 - MER90a LTR ERV1 -450 164 12 4 1046 240 389 11 0 chr4 60430308 60430398 -95199722 + FAM SINE Alu 137 227 -84 4 1046 309 51 0 0 chr4 60433213 60433252 -95196868 + (CAA)n Simple_repeat Simple_repeat 3 41 0 4 1046 348 43 0 0 chr4 60433252 60433298 -95196822 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1046 210 150 0 0 chr4 60434874 60434914 -95195206 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1046 417 236 37 28 chr4 60435258 60435367 -95194753 - B3 SINE B2 0 216 107 4 1046 376 283 114 38 chr4 60435367 60435525 -95194595 + B3 SINE B2 39 208 -8 4 1046 216 400 36 12 chr4 60435770 60435937 -95194183 - MIR SINE MIR -88 174 4 4 1046 465 97 0 0 chr4 60436177 60436249 -95193871 + (TCC)n Simple_repeat Simple_repeat 1 72 0 4 1046 519 308 44 57 chr4 60436313 60436540 -95193580 - B4A SINE B4 -13 279 56 4 1046 337 350 8 16 chr4 60436511 60436633 -95193487 - B1F1 SINE Alu -28 121 1 4 1046 958 219 118 59 chr4 60437184 60437523 -95192597 + RLTR9A LTR ERVK 10 368 0 4 1046 22 35 0 0 chr4 60437831 60437860 -95192260 + AT_rich Low_complexity Low_complexity 1 29 0 4 1046 297 0 0 0 chr4 60437914 60437947 -95192173 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1046 654 212 295 81 chr4 60437947 60438157 -95191963 + RLTR45-int LTR ERVK 2092 2266 -4978 4 1046 183 42 0 0 chr4 60438157 60438181 -95191939 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1046 829 98 9 0 chr4 60438182 60438294 -95191826 - B1_Mm SINE Alu -1 146 34 4 1046 4423 176 38 26 chr4 60438294 60439216 -95190904 + ETnERV2-int LTR ERVK 1259 2191 -5215 4 1046 7353 251 33 51 chr4 60439316 60439861 -95190259 + RMER16-int LTR ERVK 2189 2532 -4874 4 1046 861 114 0 0 chr4 60439861 60439993 -95190127 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 4 1046 11828 177 60 42 chr4 60439993 60441360 -95188760 + RMER16-int LTR ERVK 1566 3931 -3475 4 1046 504 0 0 0 chr4 60441360 60441416 -95188704 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1046 11828 173 62 41 chr4 60441416 60442157 -95187963 + RMER16-int LTR ERVK 2862 3601 -1805 4 1046 1023 109 0 14 chr4 60442157 60442296 -95187824 + B1_Mm SINE Alu 2 138 -9 5 1046 285 75 0 0 chr4 60442296 60442336 -95187784 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 1046 11828 173 62 41 chr4 60442336 60442905 -95187215 + RMER16-int LTR ERVK 3602 4174 -1232 4 1046 24 0 0 0 chr4 60442985 60443009 -95187111 + AT_rich Low_complexity Low_complexity 1 24 0 5 1046 373 274 33 33 chr4 60443169 60443290 -95186830 + ETnERV2-int LTR ERVK 6305 6425 -981 5 1046 283 204 0 36 chr4 60443497 60443553 -95186567 + ETnERV2-int LTR ERVK 7331 7384 -22 5 1046 897 223 22 97 chr4 60443618 60443896 -95186224 + RLTR9A LTR ERVK 112 368 0 5 1046 775 235 66 5 chr4 60444514 60444711 -95185409 + B3 SINE B2 1 209 -7 5 1046 297 308 16 16 chr4 60444903 60445025 -95185095 - MLT1C LTR MaLR -1 466 345 5 1046 371 268 128 5 chr4 60445234 60445396 -95184724 - MT2A LTR ERVL 0 584 347 5 1046 195 42 0 0 chr4 60445424 60445448 -95184672 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 5 1046 435 19 0 0 chr4 60445581 60445633 -95184487 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1046 267 213 0 0 chr4 60445635 60445696 -95184424 + B1_Mus2 SINE Alu 42 102 -45 5 1046 261 0 0 0 chr4 60445696 60445725 -95184395 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 5 1046 234 116 0 0 chr4 60445787 60445830 -95184290 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 5 1046 687 35 0 0 chr4 60445957 60446043 -95184077 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1046 639 159 0 0 chr4 60446043 60446156 -95183964 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 5 1046 264 182 0 0 chr4 60446177 60446232 -95183888 + B1_Mus2 SINE Alu 42 96 -51 5 1046 2075 157 65 119 chr4 60446285 60446857 -95183263 - RLTR45-int LTR ERVK -4612 2632 2092 5 1046 615 14 0 0 chr4 60446857 60446929 -95183191 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1046 195 152 0 0 chr4 60446974 60447020 -95183100 + T-rich Low_complexity Low_complexity 4 49 0 5 1046 736 266 11 85 chr4 60447340 60447623 -95182497 - RLTR9A LTR ERVK -5 363 102 5 1046 214 316 34 17 chr4 60448215 60448334 -95181786 + B1F SINE Alu 1 121 -28 5 1046 457 346 38 28 chr4 60448321 60448532 -95181588 + B4A SINE B4 67 279 -13 5 1046 258 229 0 0 chr4 60448607 60448677 -95181443 + GA-rich Low_complexity Low_complexity 2 71 0 5 1046 395 322 32 43 chr4 60448910 60449095 -95181025 + MIR SINE MIR 9 191 -71 5 1046 382 327 57 0 chr4 60449501 60449660 -95180460 - B3 SINE B2 -10 206 39 5 1046 386 306 19 0 chr4 60449660 60449768 -95180352 + B3 SINE B2 107 216 0 5 1046 321 336 59 30 chr4 60455204 60455339 -95174781 + MER90a LTR ERV1 12 150 -464 5 1046 264 301 84 66 chr4 60455395 60455562 -95174558 + MER90a LTR ERV1 229 437 -177 5 1046 22932 166 20 12 chr4 60455672 60460911 -95169209 + L1_Mus4 LINE L1 1354 6633 -3 5 1046 933 285 47 4 chr4 60460993 60461268 -95168852 - B4A SINE B4 -4 288 2 5 1046 586 260 34 122 chr4 60461650 60461944 -95168176 + B4 SINE B4 2 269 -23 5 1046 750 32 0 0 chr4 60461944 60462037 -95168083 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1046 248 148 0 16 chr4 60462348 60462410 -95167710 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 5 1046 262 363 44 19 chr4 60462770 60462930 -95167190 + MER90a LTR ERV1 12 175 -439 5 1046 238 364 42 14 chr4 60462960 60463102 -95167018 + MER90a LTR ERV1 269 414 -200 5 1046 636 102 0 0 chr4 60463166 60463264 -95166856 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1046 867 298 29 14 chr4 60463280 60463556 -95166564 - B4A SINE B4 -4 288 9 5 1046 312 284 12 0 chr4 60463842 60463923 -95166197 + B4 SINE B4 2 83 -209 5 1046 371 197 0 0 chr4 60463972 60464043 -95166077 - L1VL4 LINE L1 -5604 698 628 5 1046 4302 87 8 24 chr4 60464043 60464671 -95165449 + MMETn-int LTR ERVK 2524 3141 -1703 5 1046 362 181 0 40 chr4 60464706 60464781 -95165339 + ETnERV-int LTR ERVK 2038 2109 -1205 5 1046 38743 30 1 0 chr4 60464805 60471653 -95158467 - L1Md_T LINE L1 0 6585 1 5 1046 6439 148 21 2 chr4 60471655 60472602 -95157518 + ETnERV2-int LTR ERVK 6239 7203 -203 5 1046 275 240 370 10 chr4 60472605 60472881 -95157239 + RLTR13D6 LTR ERVK 155 531 -371 5 1046 496 100 23 70 chr4 60472881 60472967 -95157153 + ETnERV2-int LTR ERVK 7324 7405 -1 5 1046 1012 195 25 147 chr4 60472967 60473334 -95156786 + RLTRETN_Mm LTR ERVK 1 322 0 5 1046 2596 136 20 0 chr4 60473334 60473731 -95156389 - L1VL4 LINE L1 -5684 618 214 5 1046 3834 165 151 16 chr4 60473726 60474588 -95155532 - L1_Mur2 LINE L1 -2382 3495 2518 5 1046 1625 184 28 9 chr4 60474589 60474913 -95155207 - L1_Mur2 LINE L1 -5941 1145 816 5 1046 870 168 95 9 chr4 60475134 60475344 -95154776 + MERVL_2A-int LTR ERVL 5463 5690 -71 5 1046 705 154 52 0 chr4 60475342 60475478 -95154642 + MERVL_2A-int LTR ERVL 5619 5761 0 5 1046 775 239 199 105 chr4 60475478 60475771 -95154349 + MT2A LTR ERVL 1 259 -274 5 1046 2112 136 6 3 chr4 60475771 60476104 -95154016 - L1_Mus2 LINE L1 0 6566 6233 5 1046 775 239 199 105 chr4 60476104 60476297 -95153823 + MT2A LTR ERVL 260 532 -1 5 1046 656 215 0 0 chr4 60476692 60476813 -95153307 - B3 SINE B2 -95 121 1 5 1046 890 243 29 0 chr4 60476851 60477057 -95153063 - B3 SINE B2 0 216 5 5 1046 528 81 0 0 chr4 60477970 60478044 -95152076 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1046 2515 198 30 73 chr4 60478298 60479770 -95150350 - L1VL4 LINE L1 -4384 1499 261 5 1046 958 116 20 0 chr4 60479796 60479943 -95150177 - L1_Mm LINE L1 -942 4941 4792 5 1046 12422 115 37 65 chr4 60479946 60481638 -95148482 + L1_Mus1 LINE L1 3818 5453 -430 5 1046 7048 96 11 3 chr4 60481638 60482614 -95147506 + L1Md_F2 LINE L1 5587 6570 -12 5 1046 12422 80 10 12 chr4 60482614 60483606 -95146514 + L1_Mus1 LINE L1 5454 6443 -124 5 1046 2579 106 32 34 chr4 60483607 60484019 -95146101 + RLTR10A LTR ERVK 1 411 0 5 1046 1520 146 52 21 chr4 60484019 60484324 -95145796 + IAP-d-int LTR ERVK 55 602 -1385 5 1046 814 204 0 0 chr4 60484318 60484475 -95145645 + IAP-d-int LTR ERVK 347 503 -6039 5 1046 2124 59 116 6 chr4 60484475 60484944 -95145176 + IAP-d-int LTR ERVK 5007 5527 -1015 5 1046 2103 68 141 3 chr4 60484948 60485260 -95144860 + IAP-d-int LTR ERVK 5667 6021 -521 5 1046 5298 68 19 14 chr4 60485270 60485972 -95144148 + RLTR10-int LTR ERVK 1282 1986 -1 5 1046 2131 139 95 8 chr4 60485972 60486350 -95143770 + RLTR10A LTR ERVK 1 411 0 5 1046 695 63 153 0 chr4 60486350 60486461 -95143659 + L1_Mus1 LINE L1 6439 6566 -1 5 1046 1544 57 0 25 chr4 60486471 60486669 -95143451 + B2_Mm1a SINE B2 1 193 0 5 1046 424 182 0 0 chr4 60487171 60487248 -95142872 + MTA_Mm LTR MaLR 13 89 -330 5 1046 1396 63 5 0 chr4 60487263 60487452 -95142668 + MTA_Mm LTR MaLR 207 396 0 5 1046 332 279 13 0 chr4 60487452 60487531 -95142589 - B3A SINE B2 -118 80 1 5 1046 273 255 154 47 chr4 60488431 60488600 -95141520 - B3A SINE B2 -9 189 3 5 1046 837 261 122 24 chr4 60489196 60489543 -95140577 + MTD LTR MaLR 14 384 -35 5 1046 577 160 8 8 chr4 60489724 60489844 -95140276 - URR1B DNA MER1_type -4 221 102 5 1046 7202 83 15 5 chr4 60489844 60491118 -95139002 - L1Md_F2 LINE L1 -13 6569 5289 5 1046 26 0 0 0 chr4 60491118 60491144 -95138976 + AT_rich Low_complexity Low_complexity 1 26 0 5 1046 3583 54 11 5 chr4 60491144 60491590 -95138530 - L1Md_F3 LINE L1 -4 6580 6132 5 1046 1790 147 19 9 chr4 60491590 60491907 -95138213 + RLTR46 LTR ERVK 1 320 0 5 1046 292 218 37 43 chr4 60492023 60492172 -95137948 + IAPEY3-int LTR ERVK 636 733 -6947 5 1046 606 173 91 0 chr4 60492177 60492287 -95137833 + IAPEY3-int LTR ERVK 940 1059 -6621 5 1046 607 152 304 19 chr4 60492801 60492991 -95137129 + RMER16-int LTR ERVK 435 633 -4773 5 1046 332 140 18 0 chr4 60493053 60493110 -95137010 + MMERVK10C-int LTR ERVK 1089 1146 -4260 5 1046 1416 99 393 11 chr4 60493111 60493474 -95136646 + MMERVK10C-int LTR ERVK 1885 2386 -5195 5 1046 21573 92 44 1 chr4 60493478 60496872 -95133248 + MMERVK10C-int LTR ERVK 2524 6063 -1518 5 1046 4769 143 44 3 chr4 60496872 60498156 -95131964 - L1Md_F LINE L1 -4279 1604 206 5 1046 592 99 0 11 chr4 60498159 60498251 -95131869 + RMER16-int LTR ERVK 2893 2983 -2423 5 1046 719 251 73 5 chr4 60498549 60498741 -95131379 + B3 SINE B2 1 205 -11 5 1046 435 291 13 39 chr4 60498935 60499089 -95131031 - MLT1B LTR MaLR 0 390 241 5 1046 952 140 0 0 chr4 60499102 60499259 -95130861 + L1_Mus2 LINE L1 6410 6566 0 5 1046 564 210 38 199 chr4 60499288 60499555 -95130565 - MT2A LTR ERVL -309 224 1 5 1046 668 176 59 0 chr4 60499555 60499691 -95130429 - MERVL_2A-int LTR ERVL 0 5761 5618 5 1046 892 154 98 10 chr4 60499695 60499898 -95130222 - MERVL_2A-int LTR ERVL -78 5683 5463 5 1046 1358 186 84 7 chr4 60500092 60500401 -95129719 + L1_Mur2 LINE L1 816 1148 -5938 1 1046 2515 230 146 32 chr4 60500376 60501276 -95128844 + L1_Mur2 LINE L1 2499 3500 -2386 1 1046 2112 141 3 3 chr4 60501269 60501625 -95128495 + L1VL4 LINE L1 214 569 -5733 2 1046 885 161 19 19 chr4 60501630 60501788 -95128332 + RLTR9D LTR ERVK 241 398 -5 3 1046 536 175 25 8 chr4 60501801 60501922 -95128198 + L1VL4 LINE L1 575 697 -5605 2 1046 427 291 10 0 chr4 60501945 60502048 -95128072 - B4 SINE B4 -187 105 2 4 1046 458 356 40 58 chr4 60502324 60502433 -95127687 - MER90a LTR ERV1 -18 596 492 5 1046 1067 265 29 4 chr4 60502433 60502713 -95127407 + B4A SINE B4 2 288 -4 6 1046 458 356 40 58 chr4 60502713 60502729 -95127391 - MER90a LTR ERV1 -123 491 481 5 1046 570 29 0 0 chr4 60502729 60502797 -95127323 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1046 458 356 40 58 chr4 60502797 60502998 -95127122 - MER90a LTR ERV1 -134 480 275 5 1046 320 391 30 6 chr4 60503036 60503203 -95126917 - MER90a LTR ERV1 -439 175 5 5 1046 308 103 0 17 chr4 60503558 60503617 -95126503 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 8 1046 237 277 0 0 chr4 60503916 60504028 -95126092 + (TG)n Simple_repeat Simple_repeat 1 112 0 9 1046 794 275 38 41 chr4 60504028 60504320 -95125800 - B4 SINE B4 0 292 2 1 1046 977 282 47 4 chr4 60504706 60504980 -95125140 + B4A SINE B4 2 287 -5 1 1046 22257 158 15 16 chr4 60505044 60510638 -95119482 - L1_Mus4 LINE L1 -1 6635 1048 1 1046 198 67 0 0 chr4 60513179 60513185 -95116935 + (CA)n Simple_repeat Simple_repeat 2 7 0 1 1046 324 48 0 0 chr4 60513185 60513227 -95116893 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1 1046 198 67 0 0 chr4 60513227 60513250 -95116870 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1046 182 302 48 0 chr4 60513753 60513816 -95116304 - MIR SINE MIR -106 156 91 1 1046 384 82 0 0 chr4 60514837 60514898 -95115222 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1046 470 222 33 33 chr4 60515243 60515364 -95114756 - B3 SINE B2 0 216 96 1 1046 349 275 122 40 chr4 60515362 60515510 -95114610 + B3 SINE B2 49 208 -8 1 1046 289 382 36 12 chr4 60515929 60516096 -95114024 - MIR SINE MIR -88 174 4 2 1046 345 131 0 0 chr4 60516346 60516407 -95113713 + (TCC)n Simple_repeat Simple_repeat 1 61 0 2 1046 640 322 29 38 chr4 60516458 60516697 -95113423 - B4A SINE B4 0 292 56 2 1046 314 383 8 0 chr4 60516670 60516790 -95113330 - B1F1 SINE Alu -28 121 1 2 1046 972 219 118 59 chr4 60517342 60517681 -95112439 + RLTR9A LTR ERVK 10 368 0 2 1046 23 33 0 0 chr4 60517983 60518013 -95112107 + AT_rich Low_complexity Low_complexity 1 30 0 2 1046 396 0 0 0 chr4 60518066 60518110 -95112010 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1046 615 202 28 67 chr4 60518110 60518290 -95111830 + RLTR45-int LTR ERVK 2092 2264 -4980 2 1046 834 97 9 0 chr4 60518309 60518422 -95111698 - B1_Mm SINE Alu 0 147 34 2 1046 4055 172 29 31 chr4 60518423 60519357 -95110763 + ETnERV2-int LTR ERVK 1260 2191 -5215 2 1046 1259 241 4 104 chr4 60519457 60520006 -95110114 + RMER16-int LTR ERVK 2189 2540 -4866 3 1046 801 121 0 0 chr4 60520009 60520133 -95109987 + (TC)n Simple_repeat Simple_repeat 1 124 0 3 1046 10434 178 59 47 chr4 60520133 60522262 -95107858 + RMER16-int LTR ERVK 1566 3602 -1804 3 1046 992 102 0 14 chr4 60522262 60522401 -95107719 + B1_Mm SINE Alu 2 138 -9 3 1046 257 0 30 0 chr4 60522401 60522434 -95107686 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1046 10434 175 61 43 chr4 60522434 60522998 -95107122 + RMER16-int LTR ERVK 3603 4172 -1234 3 1046 23 0 0 0 chr4 60523083 60523106 -95107014 + AT_rich Low_complexity Low_complexity 1 23 0 3 1046 320 276 33 33 chr4 60523268 60523388 -95106732 + ETnERV2-int LTR ERVK 6306 6425 -981 3 1046 925 219 22 97 chr4 60523716 60523994 -95106126 + RLTR9A LTR ERVK 112 368 0 3 1046 768 240 66 5 chr4 60524612 60524809 -95105311 + B3 SINE B2 1 209 -7 3 1046 282 304 31 23 chr4 60525000 60525128 -95104992 - MLT1C LTR MaLR 0 467 339 3 1046 366 292 129 5 chr4 60525333 60525493 -95104627 - MT2A LTR ERVL -2 599 347 3 1046 216 0 0 0 chr4 60525521 60525545 -95104575 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 4 1046 198 0 0 0 chr4 60525607 60525629 -95104491 + (CAGC)n Simple_repeat Simple_repeat 1 22 0 4 1046 486 98 0 0 chr4 60525678 60525760 -95104360 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1046 286 213 0 0 chr4 60525762 60525823 -95104297 + B1_Mus2 SINE Alu 42 102 -45 4 1046 225 0 0 0 chr4 60525823 60525848 -95104272 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 4 1046 180 135 0 0 chr4 60525908 60525945 -95104175 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 4 1046 672 45 0 0 chr4 60526072 60526160 -95103960 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1046 639 159 0 0 chr4 60526160 60526273 -95103847 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 4 1046 294 191 0 31 chr4 60526288 60526353 -95103767 + B1_Mus2 SINE Alu 42 104 -43 4 1046 1953 149 66 103 chr4 60526396 60526958 -95103162 - RLTR45-int LTR ERVK -4612 2632 2092 4 1046 552 15 0 0 chr4 60526963 60527028 -95103092 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1046 228 130 0 0 chr4 60527073 60527119 -95103001 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 5 1046 826 246 45 88 chr4 60527420 60527722 -95102398 - RLTR9A LTR ERVK 0 409 102 5 1046 297 322 25 17 chr4 60528314 60528434 -95101686 + B1F1 SINE Alu 1 121 -28 5 1046 563 341 38 28 chr4 60528421 60528632 -95101488 + B4A SINE B4 67 279 -13 5 1046 230 209 0 29 chr4 60528706 60528775 -95101345 + GA-rich Low_complexity Low_complexity 2 68 0 5 1046 467 322 32 43 chr4 60529007 60529192 -95100928 + MIR SINE MIR 9 191 -71 5 1046 431 340 57 0 chr4 60529598 60529757 -95100363 - B3 SINE B2 -10 206 39 5 1046 395 315 19 0 chr4 60529757 60529865 -95100255 + B3 SINE B2 107 216 0 5 1046 226 380 0 0 chr4 60534625 60534696 -95095424 - AluF_3 SINE Alu -103 208 138 5 1046 458 305 229 39 chr4 60535305 60535663 -95094457 + MER90a LTR ERV1 12 437 -177 5 1046 16834 161 112 13 chr4 60535773 60540546 -95089574 + L1_Mus4 LINE L1 1354 6633 -3 6 1046 977 277 47 4 chr4 60540628 60540903 -95089217 - B4A SINE B4 -4 288 2 6 1046 657 283 27 119 chr4 60541284 60541577 -95088543 + B4 SINE B4 4 269 -23 6 1046 249 128 0 0 chr4 60541579 60541626 -95088494 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1046 248 148 0 16 chr4 60541937 60541999 -95088121 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 6 1046 316 361 38 12 chr4 60542359 60542519 -95087601 + MER90a LTR ERV1 12 175 -439 6 1046 300 368 36 30 chr4 60542549 60542717 -95087403 + MER90a LTR ERV1 269 437 -177 6 1046 726 93 0 0 chr4 60542758 60542866 -95087254 + (TG)n Simple_repeat Simple_repeat 1 108 0 6 1046 927 312 28 14 chr4 60542882 60543165 -95086955 - B4A SINE B4 -4 288 2 6 1046 372 259 12 0 chr4 60543444 60543525 -95086595 + B4 SINE B4 2 83 -209 6 1046 373 176 0 0 chr4 60543577 60543645 -95086475 - L1VL4 LINE L1 -5607 695 628 6 1046 3951 93 6 24 chr4 60543645 60544274 -95085846 + MMETn-int LTR ERVK 2524 3141 -1703 7 1046 6090 144 22 4 chr4 60544375 60545340 -95084780 + ETnERV2-int LTR ERVK 6222 7203 -203 7 1046 312 247 370 10 chr4 60545343 60545619 -95084501 + RLTR13D6 LTR ERVK 155 531 -371 7 1046 455 67 25 74 chr4 60545622 60545703 -95084417 + ETnERV2-int LTR ERVK 7327 7403 -3 7 1046 962 215 17 125 chr4 60545705 60546066 -95084054 + RLTRETN_Mm LTR ERVK 1 322 0 7 1046 2485 139 5 0 chr4 60546066 60546469 -95083651 - L1VL4 LINE L1 -5684 618 214 6 1046 3591 159 150 21 chr4 60546464 60547330 -95082790 - L1_Mur2 LINE L1 -2382 3495 2518 7 1046 1490 176 37 9 chr4 60547331 60547652 -95082468 - L1_Mur2 LINE L1 -5941 1145 816 7 1046 784 168 95 9 chr4 60547873 60548083 -95082037 + MERVL_2A-int LTR ERVL 5463 5690 -71 7 1046 625 162 52 0 chr4 60548081 60548217 -95081903 + MERVL_2A-int LTR ERVL 5619 5761 0 7 1046 1053 231 197 104 chr4 60548217 60548511 -95081609 + MT2A LTR ERVL 1 273 -260 7 1046 2074 138 6 3 chr4 60548511 60548844 -95081276 - L1_Mus2 LINE L1 0 6566 6233 7 1046 1053 231 197 104 chr4 60548844 60549037 -95081083 + MT2A LTR ERVL 274 532 -1 7 1046 705 215 0 0 chr4 60549432 60549553 -95080567 - B3 SINE B2 -95 121 1 7 1046 919 240 29 0 chr4 60549597 60549801 -95080319 - B3 SINE B2 -6 210 1 7 1046 441 81 0 0 chr4 60550710 60550772 -95079348 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1046 224 327 0 75 chr4 60550811 60550917 -95079203 - B3A SINE B2 -99 99 2 7 1046 2280 201 29 71 chr4 60551028 60552497 -95077623 - L1VL4 LINE L1 -4386 1497 261 8 1046 910 109 20 0 chr4 60552523 60552670 -95077450 - L1_Mm LINE L1 -942 4941 4792 8 1046 11635 111 37 66 chr4 60552673 60554366 -95075754 + L1_Mus1 LINE L1 3818 5453 -430 8 130 6679 99 13 13 chr4 60554366 60555349 -95074771 + L1Md_F2 LINE L1 5588 6570 -12 8 1047 11635 87 10 12 chr4 60555349 60556341 -95073779 + L1_Mus1 LINE L1 5454 6443 -124 8 1047 2812 103 29 27 chr4 60556342 60556752 -95073368 + RLTR10A LTR ERVK 1 411 0 8 1047 1550 152 54 21 chr4 60556752 60557082 -95073038 + IAP-d-int LTR ERVK 57 606 -1381 8 1047 715 242 0 0 chr4 60557076 60557233 -95072887 + IAP-d-int LTR ERVK 347 503 -6039 8 1047 2140 51 114 6 chr4 60557233 60557703 -95072417 + IAP-d-int LTR ERVK 5007 5527 -1015 8 1047 2112 68 141 3 chr4 60557707 60558019 -95072101 + IAP-d-int LTR ERVK 5667 6021 -521 8 1047 5215 72 19 14 chr4 60558029 60558731 -95071389 + RLTR10-int LTR ERVK 1282 1986 -1 8 1047 2279 115 122 34 chr4 60558731 60559109 -95071011 + RLTR10A LTR ERVK 1 411 0 8 1047 746 62 142 9 chr4 60559109 60559222 -95070898 + L1_Mus1 LINE L1 6439 6566 -1 8 1047 1642 47 0 25 chr4 60559232 60559428 -95070692 + B2_Mm1a SINE B2 1 191 -2 8 1047 448 182 0 0 chr4 60559924 60560001 -95070119 + MTA_Mm LTR MaLR 13 89 -330 8 1047 1526 42 5 0 chr4 60560016 60560205 -95069915 + MTA_Mm LTR MaLR 207 396 0 8 1047 361 279 13 0 chr4 60560205 60560284 -95069836 - B3A SINE B2 -118 80 1 8 1047 228 247 83 102 chr4 60560436 60560544 -95069576 - MamSINE1 SINE tRNA -170 120 15 9 1047 341 255 154 47 chr4 60561184 60561353 -95068767 - B3A SINE B2 -9 189 3 9 1047 226 289 53 0 chr4 60561487 60561563 -95068557 + MADE2 DNA Mariner 1 80 0 9 1047 947 262 167 37 chr4 60561948 60562301 -95067819 + MTD LTR MaLR 14 412 -7 9 1047 588 168 8 8 chr4 60562476 60562596 -95067524 - URR1B DNA MER1_type -4 221 102 9 1047 7233 86 12 21 chr4 60562596 60563895 -95066225 - L1Md_F2 LINE L1 -13 6569 5289 9 1047 26 0 0 0 chr4 60563895 60563921 -95066199 + AT_rich Low_complexity Low_complexity 1 26 0 9 1047 3835 45 11 2 chr4 60563921 60564366 -95065754 - L1Md_F3 LINE L1 -4 6580 6132 9 1047 1827 162 19 9 chr4 60564366 60564683 -95065437 + RLTR46 LTR ERVK 1 320 0 9 1047 265 208 50 50 chr4 60564799 60564900 -95065220 + IAPEY3-int LTR ERVK 837 937 -5884 9 1047 658 146 91 0 chr4 60564953 60565063 -95065057 + IAPEY3-int LTR ERVK 940 1059 -6621 9 1047 599 153 306 19 chr4 60565577 60565767 -95064353 + RMER16-int LTR ERVK 435 633 -4773 1 1047 326 140 18 0 chr4 60565829 60565886 -95064234 + MMERVK10C-int LTR ERVK 1089 1146 -4260 1 1047 1430 99 383 11 chr4 60565887 60566260 -95063860 + MMERVK10C-int LTR ERVK 1885 2396 -5185 1 1047 21536 97 40 1 chr4 60566254 60570780 -95059340 + MMERVK10C-int LTR ERVK 2524 7227 -354 1 1047 2133 49 14 29 chr4 60570775 60571050 -95059070 + MMERVK10C-int LTR ERVK 7410 7680 0 1 1047 1845 163 22 13 chr4 60571050 60571367 -95058753 + RLTR46 LTR ERVK 1 320 0 1 1047 1414 42 0 0 chr4 60571367 60571533 -95058587 - L1Md_F3 LINE L1 -447 6137 5972 1 1047 17910 120 232 4 chr4 60571522 60573908 -95056212 - L1Md_F LINE L1 -568 5315 2176 1 1047 4759 150 11 64 chr4 60573908 60574755 -95055365 - RLTR13B4 LTR ERVK -1 802 1 1 1047 17910 138 182 4 chr4 60574755 60576600 -95053520 - L1Md_F LINE L1 -3708 2175 206 1 1047 587 111 0 11 chr4 60576603 60576694 -95053426 + RMER16-int LTR ERVK 2893 2982 -2424 1 1047 845 236 73 5 chr4 60576994 60577186 -95052934 + B3 SINE B2 1 205 -11 1 1047 477 277 13 39 chr4 60577380 60577534 -95052586 - MLT1B LTR MaLR 0 390 241 1 1047 1079 121 0 0 chr4 60577547 60577704 -95052416 + L1_Mus2 LINE L1 6410 6566 0 1 1047 695 206 101 179 chr4 60577704 60578000 -95052120 - MT2A LTR ERVL -260 273 1 1 1047 660 184 59 0 chr4 60578000 60578136 -95051984 - MERVL_2A-int LTR ERVL 0 5761 5618 1 1047 897 159 98 10 chr4 60578140 60578343 -95051777 - MERVL_2A-int LTR ERVL -78 5683 5463 1 1047 251 283 31 23 chr4 60578400 60578530 -95051590 + L1_Mur2 LINE L1 580 710 -6376 1 1047 1631 186 56 6 chr4 60578537 60578856 -95051264 + L1_Mur2 LINE L1 816 1150 -5936 1 1047 3129 208 142 34 chr4 60578843 60579729 -95050391 + L1_Mur2 LINE L1 2511 3492 -2388 1 1047 2404 129 0 3 chr4 60579722 60580079 -95050041 + L1VL4 LINE L1 214 569 -5733 1 1047 900 155 19 19 chr4 60580084 60580242 -95049878 + RLTR9D LTR ERVK 241 398 -5 1 1047 645 165 16 8 chr4 60580255 60580377 -95049743 + L1VL4 LINE L1 575 697 -5605 1 1047 451 282 10 0 chr4 60580400 60580503 -95049617 - B4 SINE B4 -187 105 2 1 1047 421 342 45 70 chr4 60580779 60580888 -95049232 - MER90a LTR ERV1 -18 596 492 1 1047 1140 272 29 4 chr4 60580888 60581168 -95048952 + B4A SINE B4 2 288 -4 1 1047 421 342 45 70 chr4 60581168 60581186 -95048934 - MER90a LTR ERV1 -123 491 481 1 1047 297 75 0 0 chr4 60581186 60581226 -95048894 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1047 421 342 45 70 chr4 60581226 60581427 -95048693 - MER90a LTR ERV1 -134 480 275 1 1047 309 388 36 12 chr4 60581465 60581632 -95048488 - MER90a LTR ERV1 -439 175 5 1 1047 314 115 0 16 chr4 60581984 60582046 -95048074 + (TTAGGG)n Simple_repeat Simple_repeat 3 63 0 1 1047 402 239 0 0 chr4 60582345 60582479 -95047641 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1047 881 264 48 51 chr4 60582479 60582771 -95047349 - B4 SINE B4 0 292 2 1 1047 1074 277 46 18 chr4 60583157 60583440 -95046680 + B4A SINE B4 2 292 0 1 1047 24604 150 24 10 chr4 60583495 60586759 -95043361 - L1_Mus4 LINE L1 -1 6635 3307 1 1047 195 42 0 0 chr4 60586759 60586783 -95043337 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1047 24604 172 13 16 chr4 60586783 60589504 -95040616 - L1_Mus4 LINE L1 -2577 3306 613 1 1047 378 318 84 11 chr4 60589585 60589763 -95040357 - MER90a LTR ERV1 -200 375 185 1 1047 385 329 89 41 chr4 60589774 60589920 -95040200 - MER90a LTR ERV1 -450 164 12 1 1047 269 26 0 26 chr4 60593421 60593427 -95036693 + (CA)n Simple_repeat Simple_repeat 2 7 0 1 1047 258 32 0 0 chr4 60593427 60593458 -95036662 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1047 269 26 0 26 chr4 60593458 60593490 -95036630 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1047 255 31 0 0 chr4 60595084 60595116 -95035004 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1047 466 217 37 28 chr4 60595459 60595568 -95034552 - B3 SINE B2 0 216 107 1 1047 392 276 114 38 chr4 60595568 60595726 -95034394 + B3 SINE B2 39 208 -8 1 1047 217 394 36 12 chr4 60595971 60596138 -95033982 - MIR SINE MIR -88 174 4 1 1047 318 143 0 0 chr4 60596378 60596441 -95033679 + (TCC)n Simple_repeat Simple_repeat 1 63 0 1 1047 580 298 40 57 chr4 60596505 60596733 -95033387 - B4A SINE B4 -13 279 56 1 1047 349 342 8 16 chr4 60596704 60596826 -95033294 - B1F1 SINE Alu -28 121 1 1 1047 951 210 118 59 chr4 60597377 60597716 -95032404 + RLTR9A LTR ERVK 10 368 0 1 1047 333 0 0 0 chr4 60598031 60598068 -95032052 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1047 498 46 0 0 chr4 60598124 60598189 -95031931 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1047 707 200 28 66 chr4 60598189 60598371 -95031749 + RLTR45-int LTR ERVK 2092 2266 -4978 1 1047 261 0 0 0 chr4 60598391 60598420 -95031700 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1047 777 118 9 0 chr4 60598420 60598530 -95031590 - B1_Mm SINE Alu -3 144 34 1 1047 4458 172 30 31 chr4 60598530 60599464 -95030656 + ETnERV2-int LTR ERVK 1259 2191 -5215 1 1047 1356 244 11 115 chr4 60599564 60600123 -95029997 + RMER16-int LTR ERVK 2189 2546 -4860 1 1047 471 35 0 0 chr4 60600123 60600180 -95029940 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1047 11609 182 61 45 chr4 60600180 60601564 -95028556 + RMER16-int LTR ERVK 1566 3094 -2714 1 1047 459 0 0 0 chr4 60601564 60601615 -95028505 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1047 11609 176 64 43 chr4 60601615 60602357 -95027763 + RMER16-int LTR ERVK 2860 3602 -1804 1 1047 1029 117 0 14 chr4 60602357 60602496 -95027624 + B1_Mm SINE Alu 2 138 -9 1 1047 336 48 0 0 chr4 60602496 60602538 -95027582 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1047 11609 176 64 43 chr4 60602538 60603105 -95027015 + RMER16-int LTR ERVK 3603 4175 -1231 1 1047 26 0 0 0 chr4 60603187 60603213 -95026907 + AT_rich Low_complexity Low_complexity 1 26 0 1 1047 377 267 33 33 chr4 60603375 60603495 -95026625 + ETnERV2-int LTR ERVK 6306 6425 -981 1 1047 283 204 0 36 chr4 60603702 60603758 -95026362 + ETnERV2-int LTR ERVK 7331 7384 -22 1 1047 879 219 22 97 chr4 60603823 60604101 -95026019 + RLTR9A LTR ERVK 112 368 0 1 1047 839 240 66 5 chr4 60604719 60604916 -95025204 + B3 SINE B2 1 209 -7 1 1047 347 292 24 24 chr4 60605107 60605230 -95024890 - MLT1B LTR MaLR 0 390 268 1 1047 394 276 217 0 chr4 60605440 60605592 -95024528 - MT2A LTR ERVL -2 531 347 1 1047 186 43 0 0 chr4 60605629 60605652 -95024468 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 1 1047 402 69 0 0 chr4 60605785 60605843 -95024277 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1047 258 228 7 191 chr4 60605851 60605912 -95024208 + MT2B LTR ERVL 199 257 -344 1 1047 261 0 0 0 chr4 60605912 60605941 -95024179 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 1 1047 258 228 7 191 chr4 60605941 60606000 -95024120 + MT2B LTR ERVL 258 296 -305 1 1047 249 109 0 0 chr4 60606000 60606046 -95024074 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 1 1047 258 228 7 191 chr4 60606046 60606076 -95024044 + MT2B LTR ERVL 297 322 -279 1 1047 585 61 0 0 chr4 60606173 60606255 -95023865 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1047 648 158 0 0 chr4 60606255 60606369 -95023751 + (CAGAGA)n Simple_repeat Simple_repeat 1 114 0 1 1047 283 191 0 31 chr4 60606439 60606504 -95023616 + B1_Mus2 SINE Alu 42 104 -43 1 1047 2169 166 64 101 chr4 60606547 60607109 -95023011 - RLTR45-int LTR ERVK -4612 2632 2092 1 1047 417 20 0 0 chr4 60607109 60607159 -95022961 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1047 228 130 0 0 chr4 60607204 60607250 -95022870 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 1 1047 788 266 11 85 chr4 60607570 60607853 -95022267 - RLTR9A LTR ERVK -5 363 102 1 1047 297 322 25 17 chr4 60608445 60608565 -95021555 + B1F1 SINE Alu 1 121 -28 1 1047 550 337 38 28 chr4 60608552 60608763 -95021357 + B4A SINE B4 67 279 -13 1 1047 186 191 0 0 chr4 60608864 60608906 -95021214 + GA-rich Low_complexity Low_complexity 3 44 0 1 1047 420 328 32 43 chr4 60609138 60609323 -95020797 + MIR SINE MIR 9 191 -71 1 1047 392 333 56 12 chr4 60609729 60609890 -95020230 - B3 SINE B2 -10 206 39 1 1047 415 306 19 0 chr4 60609890 60609998 -95020122 + B3 SINE B2 107 216 0 1 1047 6693 129 27 2 chr4 60610658 60611951 -95018169 + L1_Mus4 LINE L1 5307 6633 -3 1 1047 965 274 47 4 chr4 60612033 60612308 -95017812 - B4A SINE B4 -4 288 2 1 1047 462 304 15 72 chr4 60612789 60612984 -95017136 + B4 SINE B4 86 269 -23 1 1047 444 51 0 0 chr4 60612984 60613043 -95017077 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1047 194 180 0 16 chr4 60613354 60613416 -95016704 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 1 1047 275 350 44 19 chr4 60613776 60613936 -95016184 + MER90a LTR ERV1 12 175 -439 1 1047 257 368 36 30 chr4 60613966 60614134 -95015986 + MER90a LTR ERV1 269 437 -177 1 1047 813 92 0 0 chr4 60614175 60614295 -95015825 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1047 808 296 36 14 chr4 60614311 60614592 -95015528 - B4A SINE B4 -4 288 2 1 1047 345 259 12 0 chr4 60614871 60614952 -95015168 + B4 SINE B4 2 83 -209 1 1047 357 206 0 0 chr4 60615004 60615072 -95015048 - L1VL2 LINE L1 -5584 751 684 1 1047 4156 101 12 28 chr4 60615072 60615716 -95014404 + MMETn-int LTR ERVK 2524 3157 -1687 1 1047 6611 140 21 4 chr4 60615801 60616767 -95013353 + ETnERV2-int LTR ERVK 6222 7203 -203 1 1047 248 237 367 11 chr4 60616770 60617046 -95013074 + RLTR13B1 LTR ERVK 155 531 -371 1 1047 481 113 23 70 chr4 60617046 60617132 -95012988 + ETnERV2-int LTR ERVK 7324 7405 -1 1 1047 978 208 25 145 chr4 60617132 60617498 -95012622 + RLTRETN_Mm LTR ERVK 1 322 0 1 1047 2592 149 5 0 chr4 60617498 60617901 -95012219 - L1VL4 LINE L1 -5684 618 214 1 1047 3751 157 158 17 chr4 60617896 60618720 -95011400 - L1_Mur2 LINE L1 -2382 3495 2556 1 1047 277 301 32 18 chr4 60618896 60619024 -95011096 - L1MA8 LINE L1 -266 6034 5900 1 1047 311 214 14 0 chr4 60619047 60619117 -95011003 + MERVL_2A-int LTR ERVL 5620 5690 -71 1 1047 669 169 52 0 chr4 60619115 60619251 -95010869 + MERVL_2A-int LTR ERVL 5619 5761 0 1 1047 768 230 211 117 chr4 60619251 60619544 -95010576 + MT2A LTR ERVL 1 253 -280 1 1047 2116 136 6 3 chr4 60619544 60619877 -95010243 - L1_Mus2 LINE L1 0 6566 6233 1 1047 768 230 211 117 chr4 60619877 60620070 -95010050 + MT2A LTR ERVL 254 533 0 1 1047 613 265 0 0 chr4 60620450 60620582 -95009538 - B3 SINE B2 -84 132 1 1 1047 882 250 30 0 chr4 60620626 60620826 -95009294 - B3 SINE B2 -6 210 5 1 1047 423 83 0 0 chr4 60621739 60621799 -95008321 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1047 2378 200 30 81 chr4 60622053 60623531 -95006589 - L1VL4 LINE L1 -4384 1499 261 1 1047 988 109 20 0 chr4 60623557 60623704 -95006416 - L1_Mm LINE L1 -942 4941 4792 1 1047 6510 101 77 1 chr4 60623707 60624691 -95005429 + L1Md_F2 LINE L1 3818 4876 -1007 1 1047 38750 32 1 1 chr4 60624699 60632274 -94997846 - L1Md_T LINE L1 0 6585 1 1 1047 1937 111 0 0 chr4 60632275 60632545 -94997575 + L1Md_F2 LINE L1 5317 5586 -297 1 1047 6942 94 12 14 chr4 60632546 60633531 -94996589 + L1Md_F2 LINE L1 5588 6570 -12 1 1047 6451 85 5 3 chr4 60633531 60634523 -94995597 + L1_Mus1 LINE L1 5450 6443 -124 1 1047 2634 105 29 27 chr4 60634524 60634934 -94995186 + RLTR10A LTR ERVK 1 411 0 1 1047 1615 190 112 21 chr4 60634934 60635515 -94994605 + IAP-d-int LTR ERVK 55 606 -1381 1 1047 2128 53 117 6 chr4 60635515 60635984 -94994136 + IAP-d-int LTR ERVK 5007 5527 -1015 1 1047 2077 71 141 3 chr4 60635988 60636300 -94993820 + IAP-d-int LTR ERVK 5667 6021 -521 1 1047 5231 72 19 14 chr4 60636310 60637012 -94993108 + RLTR10-int LTR ERVK 1282 1986 -1 1 1047 2171 115 119 32 chr4 60637012 60637390 -94992730 + RLTR10A LTR ERVK 1 411 0 1 1047 690 95 103 0 chr4 60637390 60637506 -94992614 + L1_Mus2 LINE L1 6438 6565 -1 1 1047 1531 48 0 26 chr4 60637516 60637708 -94992412 + B2_Mm1a SINE B2 1 187 -6 1 1047 422 185 0 0 chr4 60638211 60638297 -94991823 + MTA_Mm LTR MaLR 13 98 -321 2 1047 1439 48 5 0 chr4 60638303 60638492 -94991628 + MTA_Mm LTR MaLR 207 396 0 2 1047 369 241 13 0 chr4 60638492 60638571 -94991549 - B3A SINE B2 -118 80 1 2 1047 870 256 124 27 chr4 60640228 60640575 -94989545 + MTD LTR MaLR 14 384 -35 2 1047 570 160 8 8 chr4 60640756 60640876 -94989244 - URR1B DNA MER1_type -4 221 102 2 1047 7141 80 18 4 chr4 60640876 60642072 -94988048 - L1Md_F2 LINE L1 -14 6568 5361 2 1047 20761 5 0 0 chr4 60642086 60644821 -94985299 + L1Md_A LINE L1 818 3553 -2330 2 1047 338 150 0 16 chr4 60644821 60644882 -94985238 + RLTR46 LTR ERVK 261 320 0 2 1047 270 206 55 0 chr4 60645001 60645074 -94985046 + IAPEY3-int LTR ERVK 840 916 -5905 2 1047 626 164 91 0 chr4 60645152 60645262 -94984858 + IAPEY3-int LTR ERVK 940 1059 -6621 2 1047 600 146 304 19 chr4 60645776 60645966 -94984154 + RMER16-int LTR ERVK 435 633 -4773 2 1047 331 140 18 0 chr4 60646028 60646085 -94984035 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 1047 1397 102 383 11 chr4 60646086 60646459 -94983661 + MMERVK10C-int LTR ERVK 1885 2396 -5185 2 1047 21535 99 35 1 chr4 60646453 60651002 -94979118 + MMERVK10C-int LTR ERVK 2524 7227 -354 2 1047 2107 56 14 29 chr4 60650997 60651272 -94978848 + MMERVK10C-int LTR ERVK 7410 7680 0 2 1047 1587 179 22 13 chr4 60651272 60651589 -94978531 + RLTR46 LTR ERVK 1 320 0 2 1047 1449 36 0 0 chr4 60651589 60651755 -94978365 - L1Md_F3 LINE L1 -447 6137 5972 2 1047 8103 127 5 2 chr4 60651744 60653004 -94977116 - L1Md_F LINE L1 -568 5318 4055 2 1047 7301 119 4 4 chr4 60653008 60654126 -94975994 - MusHAL1 LINE L1 -627 2085 968 2 1047 3451 140 34 19 chr4 60654129 60654976 -94975144 - RLTR13B4 LTR ERVK -1 892 1 2 1047 6190 146 62 7 chr4 60654976 60656792 -94973328 - L1Md_F LINE L1 -3708 2178 152 2 1047 333 117 16 32 chr4 60656762 60656824 -94973296 - L1Md_F LINE L1 -5943 676 616 2 1047 578 111 0 11 chr4 60656827 60656918 -94973202 + RMER16-int LTR ERVK 2893 2982 -2424 2 1047 757 241 73 5 chr4 60657217 60657409 -94972711 + B3 SINE B2 1 205 -11 2 1047 426 284 13 39 chr4 60657603 60657757 -94972363 - MLT1B LTR MaLR 0 390 241 2 1047 1001 127 0 0 chr4 60657770 60657927 -94972193 + L1_Mus2 LINE L1 6410 6566 0 2 1047 582 210 38 199 chr4 60657955 60658222 -94971898 - MT2A LTR ERVL -309 224 1 2 1047 861 173 144 6 chr4 60658222 60658558 -94971562 - MERVL_2A-int LTR ERVL 0 5761 5463 2 1047 251 242 61 53 chr4 60658614 60658745 -94971375 + L1_Mur2 LINE L1 579 710 -6376 2 1047 1627 180 56 6 chr4 60658752 60659071 -94971049 + L1_Mur2 LINE L1 816 1150 -5936 2 1047 3158 207 142 34 chr4 60659058 60659944 -94970176 + L1_Mur2 LINE L1 2511 3492 -2388 2 1047 2391 132 0 3 chr4 60659937 60660294 -94969826 + L1VL4 LINE L1 214 569 -5733 2 1047 849 161 19 19 chr4 60660299 60660457 -94969663 + RLTR9D LTR ERVK 241 398 -5 2 1047 642 165 16 8 chr4 60660470 60660592 -94969528 + L1VL4 LINE L1 575 697 -5605 2 1047 386 301 10 0 chr4 60660615 60660718 -94969402 - B4 SINE B4 -187 105 2 2 1047 350 345 46 64 chr4 60660994 60661103 -94969017 - MER90a LTR ERV1 -18 596 492 2 1047 1066 275 25 4 chr4 60661103 60661384 -94968736 + B4A SINE B4 2 288 -4 2 1047 350 345 46 64 chr4 60661384 60661400 -94968720 - MER90a LTR ERV1 -123 491 481 2 1047 426 39 0 0 chr4 60661400 60661452 -94968668 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1047 350 345 46 64 chr4 60661452 60661653 -94968467 - MER90a LTR ERV1 -134 480 275 2 1047 267 388 36 12 chr4 60661691 60661858 -94968262 - MER90a LTR ERV1 -439 175 5 2 1047 314 115 0 16 chr4 60662210 60662272 -94967848 + (TTAGGG)n Simple_repeat Simple_repeat 3 63 0 2 1047 594 311 38 44 chr4 60662623 60662646 -94967474 - B4 SINE B4 0 292 270 2 1047 477 76 0 0 chr4 60662646 60662712 -94967408 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1047 594 311 38 44 chr4 60662712 60662981 -94967139 - B4 SINE B4 -23 269 2 2 1047 932 280 55 4 chr4 60663367 60663639 -94966481 + B4A SINE B4 2 287 -5 2 1047 19162 149 26 8 chr4 60663703 60666969 -94963151 - L1_Mus4 LINE L1 -1 6635 3307 2 1047 240 35 0 0 chr4 60666969 60666998 -94963122 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1047 19162 171 14 15 chr4 60666998 60669708 -94960412 - L1_Mus4 LINE L1 -2577 3306 613 2 1047 399 339 79 6 chr4 60669789 60669967 -94960153 - MER90a LTR ERV1 -200 375 185 2 1047 400 321 89 41 chr4 60669978 60670124 -94959996 - MER90a LTR ERV1 -450 164 12 2 1047 269 367 11 0 chr4 60670727 60670817 -94959303 + FAM SINE Alu 137 227 -84 2 1047 291 71 0 0 chr4 60673634 60673676 -94956444 + (CAA)n Simple_repeat Simple_repeat 3 44 0 2 1047 195 284 135 0 chr4 60674201 60674275 -94955845 - MIR SINE MIR -106 156 73 2 1047 468 217 37 28 chr4 60675670 60675779 -94954341 - B3 SINE B2 0 216 107 2 1047 407 276 114 38 chr4 60675779 60675937 -94954183 + B3 SINE B2 39 208 -8 2 1047 250 396 39 14 chr4 60676148 60676348 -94953772 - MIR SINE MIR -52 216 4 2 1047 303 130 0 0 chr4 60676588 60676642 -94953478 + (TCC)n Simple_repeat Simple_repeat 1 54 0 2 1047 550 332 26 44 chr4 60676707 60676934 -94953186 - B4A SINE B4 -14 278 56 2 1047 348 342 8 16 chr4 60676905 60677027 -94953093 - B1F1 SINE Alu -28 121 1 2 1047 950 213 118 59 chr4 60677578 60677917 -94952203 + RLTR9A LTR ERVK 10 368 0 2 1047 27 29 0 0 chr4 60678225 60678259 -94951861 + AT_rich Low_complexity Low_complexity 1 34 0 2 1047 432 0 0 0 chr4 60678312 60678360 -94951760 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1047 597 177 75 52 chr4 60678360 60678533 -94951587 + RLTR45-int LTR ERVK 2090 2266 -4978 2 1047 810 107 9 0 chr4 60678560 60678672 -94951448 - B1_Mm SINE Alu -1 146 34 2 1047 4008 175 31 32 chr4 60678672 60679606 -94950514 + ETnERV2-int LTR ERVK 1259 2191 -5215 2 1047 6135 248 38 55 chr4 60679706 60680251 -94949869 + RMER16-int LTR ERVK 2189 2532 -4874 2 1047 1026 115 0 0 chr4 60680251 60680407 -94949713 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 2 1047 10259 173 78 44 chr4 60680407 60682480 -94947640 + RMER16-int LTR ERVK 1566 4030 -3376 2 1047 988 102 0 14 chr4 60682480 60682619 -94947501 + B1_Mm SINE Alu 2 138 -9 2 1047 291 71 0 0 chr4 60682619 60682661 -94947459 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1047 10259 170 80 43 chr4 60682661 60683225 -94946895 + RMER16-int LTR ERVK 3603 4172 -1234 2 1047 25 0 0 0 chr4 60683308 60683333 -94946787 + AT_rich Low_complexity Low_complexity 1 25 0 2 1047 358 256 33 33 chr4 60683493 60683614 -94946506 + ETnERV2-int LTR ERVK 6305 6425 -981 2 1047 954 211 22 97 chr4 60683942 60684220 -94945900 + RLTR9A LTR ERVK 112 368 0 2 1047 772 235 66 5 chr4 60684838 60685035 -94945085 + B3 SINE B2 1 209 -7 2 1047 348 292 24 24 chr4 60685226 60685349 -94944771 - MLT1B LTR MaLR 0 390 268 2 1047 413 264 130 5 chr4 60685558 60685713 -94944407 - MT2A LTR ERVL 0 584 347 2 1047 195 42 0 0 chr4 60685748 60685772 -94944348 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 2 1047 183 42 0 0 chr4 60685830 60685854 -94944266 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 2 1047 711 59 0 0 chr4 60685904 60686005 -94944115 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1047 290 180 0 0 chr4 60686006 60686067 -94944053 + B1_Mus2 SINE Alu 42 102 -45 2 1047 231 36 0 0 chr4 60686068 60686096 -94944024 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 2 130 192 97 0 0 chr4 60686318 60686349 -94943771 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1048 540 158 0 0 chr4 60686358 60686453 -94943667 + (CAGAGA)n Simple_repeat Simple_repeat 1 95 0 2 1048 274 191 0 31 chr4 60686492 60686557 -94943563 + B1_Mus2 SINE Alu 42 104 -43 2 1048 1865 155 66 121 chr4 60686600 60687172 -94942948 - RLTR45-int LTR ERVK -4612 2632 2092 2 1048 669 13 0 0 chr4 60687172 60687250 -94942870 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 1048 195 152 0 0 chr4 60687295 60687341 -94942779 + T-rich Low_complexity Low_complexity 4 49 0 2 1048 779 254 45 88 chr4 60687642 60687944 -94942176 - RLTR9A LTR ERVK 0 409 102 2 1048 262 339 25 8 chr4 60688535 60688654 -94941466 + B1F1 SINE Alu 1 121 -28 2 1048 536 346 38 28 chr4 60688641 60688852 -94941268 + B4A SINE B4 67 279 -13 2 1048 246 156 0 0 chr4 60688954 60688999 -94941121 + GA-rich Low_complexity Low_complexity 3 47 0 2 1048 467 322 32 43 chr4 60689232 60689417 -94940703 + MIR SINE MIR 9 191 -71 2 1048 452 327 57 0 chr4 60689823 60689982 -94940138 - B3 SINE B2 -10 206 39 2 1048 432 296 19 0 chr4 60689982 60690090 -94940030 + B3 SINE B2 107 216 0 2 1048 184 289 92 0 chr4 60691447 60691523 -94938597 + MIR SINE MIR 74 156 -106 2 1048 486 0 0 0 chr4 60692020 60692074 -94938046 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1048 226 380 0 0 chr4 60694881 60694952 -94935168 - AluF_3 SINE Alu -103 208 138 2 1048 447 308 229 39 chr4 60695561 60695919 -94934201 + MER90a LTR ERV1 12 437 -177 2 1048 18160 179 18 15 chr4 60696029 60700001 -94930119 + L1_Mm LINE L1 1354 5339 -544 2 1048 289 114 0 0 chr4 60700001 60700045 -94930075 + IAP-d-int LTR ERVK 134 177 -6365 2 1048 743 210 0 0 chr4 60700039 60700196 -94929924 + IAP-d-int LTR ERVK 347 503 -6039 2 1048 1946 59 117 6 chr4 60700196 60700665 -94929455 + IAP-d-int LTR ERVK 5007 5527 -1015 2 1048 1926 66 145 0 chr4 60700677 60700981 -94929139 + IAP-d-int LTR ERVK 5674 6021 -521 2 1048 4811 75 19 14 chr4 60700991 60701690 -94928430 + RLTR10-int LTR ERVK 1282 1983 -4 2 1048 2206 99 122 34 chr4 60701694 60702072 -94928048 + RLTR10A LTR ERVK 1 411 0 2 1048 725 62 143 0 chr4 60702072 60702184 -94927936 + L1_Mus1 LINE L1 6439 6566 -1 2 1048 1531 42 0 30 chr4 60702194 60702393 -94927727 + B2_Mm1a SINE B2 1 193 0 2 1048 244 276 53 0 chr4 60702445 60702521 -94927599 + MADE2 DNA Mariner 1 80 0 2 1048 454 188 0 0 chr4 60702878 60702958 -94927162 + MTA_Mm LTR MaLR 10 89 -330 2 1048 1480 58 5 0 chr4 60702973 60703162 -94926958 + MTA_Mm LTR MaLR 207 396 0 2 1048 355 291 13 0 chr4 60703162 60703241 -94926879 - B3A SINE B2 -118 80 1 2 1048 221 247 83 102 chr4 60703393 60703501 -94926619 - MamSINE1 SINE tRNA -170 120 15 2 1048 273 296 102 45 chr4 60704124 60704301 -94925819 - B2_Mm2 SINE B2 -6 189 3 2 1048 923 262 169 42 chr4 60704895 60705249 -94924871 + MTD LTR MaLR 14 412 -7 2 1048 614 160 8 8 chr4 60705424 60705544 -94924576 - URR1B DNA MER1_type -4 221 102 2 1048 6741 80 15 4 chr4 60705544 60706817 -94923303 - L1Md_F2 LINE L1 -13 6569 5289 2 1048 23 0 0 0 chr4 60706817 60706840 -94923280 + AT_rich Low_complexity Low_complexity 1 23 0 2 1048 3513 54 11 7 chr4 60706840 60707287 -94922833 - L1Md_F3 LINE L1 -4 6580 6132 2 1048 1823 141 22 13 chr4 60707287 60707604 -94922516 + RLTR46 LTR ERVK 1 320 0 2 1048 252 211 53 0 chr4 60707721 60707797 -94922323 + IAPEY3-int LTR ERVK 837 916 -5905 2 1048 554 173 91 0 chr4 60707876 60707986 -94922134 + IAPEY3-int LTR ERVK 940 1059 -6621 2 1048 544 152 192 41 chr4 60708500 60708672 -94921448 + MMERVK10C-int LTR ERVK 435 632 -4774 2 1048 321 123 18 0 chr4 60708752 60708809 -94921311 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 1048 1280 99 386 11 chr4 60708810 60709182 -94920938 + MMERVK10C-int LTR ERVK 1885 2396 -5185 2 1048 20014 99 37 1 chr4 60709176 60713716 -94916404 + MMERVK10C-int LTR ERVK 2524 7227 -354 2 1048 1986 52 14 29 chr4 60713711 60713986 -94916134 + MMERVK10C-int LTR ERVK 7410 7680 0 2 1048 1768 150 22 13 chr4 60713986 60714303 -94915817 + RLTR46 LTR ERVK 1 320 0 2 1048 1327 42 0 0 chr4 60714303 60714469 -94915651 - L1Md_F3 LINE L1 -447 6137 5972 2 1048 7500 126 5 6 chr4 60714458 60715723 -94914397 - L1Md_F LINE L1 -568 5315 4052 2 1048 6829 118 6 4 chr4 60715728 60716843 -94913277 - L1Md_F LINE L1 -2595 3288 2171 2 1048 3618 145 35 19 chr4 60716845 60717692 -94912428 - RLTR13B4 LTR ERVK -1 892 1 2 1048 5735 134 69 3 chr4 60717692 60719536 -94910584 - L1Md_F LINE L1 -3708 2175 206 2 1048 514 122 0 11 chr4 60719539 60719630 -94910490 + RMER16-int LTR ERVK 2893 2982 -2424 3 1048 686 253 78 5 chr4 60719930 60720121 -94909999 + B3 SINE B2 1 205 -11 3 1048 481 284 13 39 chr4 60720315 60720469 -94909651 - MLT1B LTR MaLR 0 390 241 3 1048 996 127 0 0 chr4 60720482 60720639 -94909481 + L1_Mus2 LINE L1 6410 6566 0 3 1048 656 214 101 179 chr4 60720640 60720936 -94909184 - MT2A LTR ERVL -260 273 1 3 1048 595 156 66 7 chr4 60720936 60721072 -94909048 - MERVL_2A-int LTR ERVL 0 5761 5618 3 1048 769 164 98 10 chr4 60721076 60721279 -94908841 - MERVL_2A-int LTR ERVL -78 5683 5463 3 1048 1456 187 57 6 chr4 60721473 60721790 -94908330 + L1_Mur2 LINE L1 442 774 -5938 3 1048 2725 216 147 27 chr4 60721765 60722663 -94907457 + MusHAL1 LINE L1 1292 2297 -415 3 1048 2173 127 0 3 chr4 60722659 60722998 -94907122 + L1VL4 LINE L1 214 551 -5751 3 1048 914 169 53 14 chr4 60722998 60723187 -94906933 + RLTR9F LTR ERVK 121 415 0 3 1048 579 174 16 8 chr4 60723192 60723314 -94906806 + L1VL4 LINE L1 575 697 -5605 3 1048 449 282 10 0 chr4 60723337 60723440 -94906680 - B4 SINE B4 -187 105 2 3 1048 458 356 40 58 chr4 60723716 60723825 -94906295 - MER90a LTR ERV1 -18 596 492 3 1048 1062 275 25 4 chr4 60723825 60724106 -94906014 + B4A SINE B4 2 288 -4 3 1048 458 356 40 58 chr4 60724106 60724122 -94905998 - MER90a LTR ERV1 -123 491 481 3 1048 369 62 0 0 chr4 60724122 60724170 -94905950 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1048 458 356 40 58 chr4 60724170 60724371 -94905749 - MER90a LTR ERV1 -134 480 275 3 1048 320 391 30 6 chr4 60724409 60724576 -94905544 - MER90a LTR ERV1 -439 175 5 3 1048 308 103 0 17 chr4 60724931 60724990 -94905130 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 3 1048 201 287 0 0 chr4 60725289 60725397 -94904723 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1048 794 275 38 41 chr4 60725397 60725689 -94904431 - B4 SINE B4 0 292 2 3 1048 977 282 47 4 chr4 60726075 60726349 -94903771 + B4A SINE B4 2 287 -5 3 1048 22301 157 15 16 chr4 60726413 60732007 -94898113 - L1_Mus4 LINE L1 -1 6635 1048 3 1048 198 67 0 0 chr4 60734548 60734554 -94895566 + (CA)n Simple_repeat Simple_repeat 2 7 0 3 1048 297 51 0 0 chr4 60734554 60734593 -94895527 + (CAA)n Simple_repeat Simple_repeat 3 41 0 3 1048 198 67 0 0 chr4 60734593 60734616 -94895504 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1048 182 302 48 0 chr4 60735119 60735182 -94894938 - MIR SINE MIR -106 156 91 3 1048 258 138 0 0 chr4 60736203 60736261 -94893859 + (T)n Simple_repeat Simple_repeat 1 58 0 3 1048 470 222 33 33 chr4 60736606 60736727 -94893393 - B3 SINE B2 0 216 96 3 1048 349 275 122 40 chr4 60736725 60736873 -94893247 + B3 SINE B2 49 208 -8 3 1048 289 382 36 12 chr4 60737292 60737459 -94892661 - MIR SINE MIR -88 174 4 3 1048 345 131 0 0 chr4 60737709 60737770 -94892350 + (TCC)n Simple_repeat Simple_repeat 1 61 0 3 1048 648 317 29 38 chr4 60737821 60738060 -94892060 - B4A SINE B4 0 292 56 3 1048 336 375 8 0 chr4 60738033 60738153 -94891967 - B1F1 SINE Alu -28 121 1 3 1048 972 219 118 59 chr4 60738705 60739044 -94891076 + RLTR9A LTR ERVK 10 368 0 3 1048 23 33 0 0 chr4 60739346 60739376 -94890744 + AT_rich Low_complexity Low_complexity 1 30 0 3 1048 396 0 0 0 chr4 60739429 60739473 -94890647 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1048 615 202 28 67 chr4 60739473 60739653 -94890467 + RLTR45-int LTR ERVK 2092 2264 -4980 3 1048 834 97 9 0 chr4 60739672 60739785 -94890335 - B1_Mm SINE Alu 0 147 34 3 1048 4086 171 29 31 chr4 60739786 60740720 -94889400 + ETnERV2-int LTR ERVK 1260 2191 -5215 3 1048 6537 246 32 50 chr4 60740820 60741361 -94888759 + RMER16-int LTR ERVK 2189 2532 -4874 3 1048 882 129 0 0 chr4 60741361 60741501 -94888619 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 3 1048 10577 180 60 37 chr4 60741501 60742870 -94887250 + RMER16-int LTR ERVK 1566 3931 -3475 3 1048 432 0 0 0 chr4 60742870 60742918 -94887202 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1048 10577 176 62 36 chr4 60742918 60743649 -94886471 + RMER16-int LTR ERVK 2862 3601 -1805 3 1048 992 102 0 14 chr4 60743649 60743788 -94886332 + B1_Mm SINE Alu 2 138 -9 3 1048 257 0 30 0 chr4 60743788 60743821 -94886299 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1048 10577 176 62 36 chr4 60743821 60744385 -94885735 + RMER16-int LTR ERVK 3602 4171 -1235 3 1048 23 0 0 0 chr4 60744469 60744492 -94885628 + AT_rich Low_complexity Low_complexity 1 23 0 3 1048 320 276 33 33 chr4 60744654 60744774 -94885346 + ETnERV2-int LTR ERVK 6306 6425 -981 3 1048 925 219 22 97 chr4 60745102 60745380 -94884740 + RLTR9A LTR ERVK 112 368 0 3 1048 768 240 66 5 chr4 60745998 60746195 -94883925 + B3 SINE B2 1 209 -7 3 1048 282 304 31 23 chr4 60746386 60746514 -94883606 - MLT1C LTR MaLR 0 467 339 3 1048 366 292 129 5 chr4 60746719 60746879 -94883241 - MT2A LTR ERVL -2 599 347 3 1048 195 42 0 0 chr4 60746907 60746931 -94883189 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 1048 198 0 0 0 chr4 60746993 60747015 -94883105 + (CAGC)n Simple_repeat Simple_repeat 1 22 0 3 1048 399 118 0 0 chr4 60747064 60747140 -94882980 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1048 286 213 0 0 chr4 60747142 60747203 -94882917 + B1_Mus2 SINE Alu 42 102 -45 3 1048 225 0 0 0 chr4 60747203 60747228 -94882892 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 3 1048 180 135 0 0 chr4 60747288 60747325 -94882795 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 3 1048 564 53 0 0 chr4 60747452 60747528 -94882592 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1048 639 159 0 0 chr4 60747528 60747641 -94882479 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 3 1048 294 191 0 31 chr4 60747650 60747715 -94882405 + B1_Mus2 SINE Alu 42 104 -43 3 1048 1953 149 66 103 chr4 60747758 60748320 -94881800 - RLTR45-int LTR ERVK -4612 2632 2092 3 1048 462 18 0 0 chr4 60748325 60748380 -94881740 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1048 228 130 0 0 chr4 60748425 60748471 -94881649 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 3 1048 826 246 45 88 chr4 60748772 60749074 -94881046 - RLTR9A LTR ERVK 0 409 102 3 1048 297 322 25 17 chr4 60749666 60749786 -94880334 + B1F1 SINE Alu 1 121 -28 3 1048 563 341 38 28 chr4 60749773 60749984 -94880136 + B4A SINE B4 67 279 -13 3 1048 230 209 0 29 chr4 60750058 60750127 -94879993 + GA-rich Low_complexity Low_complexity 2 68 0 3 1048 467 322 32 43 chr4 60750359 60750544 -94879576 + MIR SINE MIR 9 191 -71 3 1048 431 340 57 0 chr4 60750950 60751109 -94879011 - B3 SINE B2 -10 206 39 3 1048 395 315 19 0 chr4 60751109 60751217 -94878903 + B3 SINE B2 107 216 0 3 1048 185 255 17 68 chr4 60755505 60755564 -94874556 - MER5B DNA MER1_type -72 106 51 3 1048 226 380 0 0 chr4 60755976 60756047 -94874073 - AluF_3 SINE Alu -103 208 138 3 1048 458 305 229 39 chr4 60756656 60757014 -94873106 + MER90a LTR ERV1 12 437 -177 3 1048 15687 176 18 18 chr4 60757124 60760552 -94869568 + L1_Mm LINE L1 1354 4783 -1100 3 1048 440 115 23 11 chr4 60760553 60760641 -94869479 + L1_Mur2 LINE L1 5239 5327 -550 3 1048 264 286 16 0 chr4 60810650 60810713 -94819407 - B1F1 SINE Alu -85 64 1 3 1048 948 217 121 62 chr4 60811265 60811604 -94818516 + RLTR9A LTR ERVK 10 368 0 3 1048 198 0 0 0 chr4 60811913 60811935 -94818185 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 3 1048 306 0 0 0 chr4 60811989 60812023 -94818097 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1048 618 202 28 67 chr4 60812023 60812203 -94817917 + RLTR45-int LTR ERVK 2092 2264 -4980 3 1048 826 98 9 0 chr4 60812222 60812334 -94817786 - B1_Mm SINE Alu -1 146 34 3 1048 4082 172 29 31 chr4 60812335 60813269 -94816851 + ETnERV2-int LTR ERVK 1260 2191 -5215 3 1048 6545 249 25 56 chr4 60813369 60813891 -94816229 + RMER16-int LTR ERVK 2189 2531 -4875 3 1048 564 62 0 0 chr4 60813891 60813972 -94816148 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 3 1048 10604 178 58 40 chr4 60813972 60816125 -94813995 + RMER16-int LTR ERVK 1566 4094 -3312 3 1048 992 102 0 14 chr4 60816125 60816264 -94813856 + B1_Mm SINE Alu 2 138 -9 3 1048 257 0 30 0 chr4 60816264 60816297 -94813823 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1048 10604 174 61 39 chr4 60816297 60816861 -94813259 + RMER16-int LTR ERVK 3603 4172 -1234 3 1048 23 0 0 0 chr4 60816946 60816969 -94813151 + AT_rich Low_complexity Low_complexity 1 23 0 3 1048 320 276 33 33 chr4 60817131 60817251 -94812869 + ETnERV2-int LTR ERVK 6306 6425 -981 3 1049 885 200 30 122 chr4 60817543 60817576 -94812544 + RLTR9A LTR ERVK 95 123 -245 3 1049 183 80 0 0 chr4 60817576 60817601 -94812519 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 3 1049 885 200 30 122 chr4 60817601 60817869 -94812251 + RLTR9A LTR ERVK 124 368 0 3 1049 781 235 66 5 chr4 60818487 60818684 -94811436 + B3 SINE B2 1 209 -7 3 1049 355 292 24 24 chr4 60818875 60818998 -94811122 - MLT1B LTR MaLR 0 390 268 3 1049 456 257 217 0 chr4 60819209 60819361 -94810759 - MT2A LTR ERVL -2 531 347 3 1049 195 42 0 0 chr4 60819397 60819421 -94810699 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 1049 297 100 0 0 chr4 60819554 60819604 -94810516 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1049 286 213 0 0 chr4 60819606 60819667 -94810453 + B1_Mus2 SINE Alu 42 102 -45 3 1049 225 0 0 0 chr4 60819667 60819692 -94810428 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 3 1049 297 131 0 0 chr4 60819752 60819813 -94810307 + (CAGA)n Simple_repeat Simple_repeat 3 63 0 3 1049 582 51 0 0 chr4 60819940 60820018 -94810102 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1049 216 158 0 0 chr4 60820024 60820062 -94810058 + (CAGAGA)n Simple_repeat Simple_repeat 1 38 0 3 1049 300 175 0 31 chr4 60820062 60820127 -94809993 + B1_Mus2 SINE Alu 42 104 -43 3 1049 1837 157 65 111 chr4 60820170 60820737 -94809383 - RLTR45-int LTR ERVK -4612 2632 2092 3 1049 393 39 0 0 chr4 60820742 60820793 -94809327 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1049 228 130 0 0 chr4 60820838 60820884 -94809236 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 3 1049 851 255 11 85 chr4 60821204 60821487 -94808633 - RLTR9A LTR ERVK -5 363 102 3 1049 297 322 25 17 chr4 60822079 60822199 -94807921 + B1F1 SINE Alu 1 121 -28 3 1049 563 341 38 28 chr4 60822186 60822397 -94807723 + B4A SINE B4 67 279 -13 4 1049 230 209 0 29 chr4 60822471 60822540 -94807580 + GA-rich Low_complexity Low_complexity 2 68 0 4 1049 467 322 32 43 chr4 60822772 60822957 -94807163 + MIR SINE MIR 9 191 -71 4 1049 429 340 57 0 chr4 60823363 60823522 -94806598 - B3 SINE B2 -10 206 39 4 1049 417 306 19 0 chr4 60823522 60823630 -94806490 + B3 SINE B2 107 216 0 4 1049 226 380 0 0 chr4 60828381 60828452 -94801668 - AluF_3 SINE Alu -103 208 138 4 1049 454 320 221 31 chr4 60829059 60829417 -94800703 + MER90a LTR ERV1 12 437 -177 4 1049 21064 164 25 8 chr4 60829527 60834760 -94795360 + L1_Mus4 LINE L1 1354 6633 -3 4 1049 1045 277 47 4 chr4 60834842 60835117 -94795003 - B4A SINE B4 -4 288 2 4 1049 695 273 30 126 chr4 60835498 60835793 -94794327 + B4 SINE B4 2 269 -23 4 1049 267 93 0 0 chr4 60835793 60835836 -94794284 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1049 194 180 0 16 chr4 60836147 60836209 -94793911 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 4 1049 313 357 44 19 chr4 60836569 60836729 -94793391 + MER90a LTR ERV1 12 175 -439 4 1049 291 368 36 30 chr4 60836759 60836927 -94793193 + MER90a LTR ERV1 269 437 -177 4 1049 858 81 0 0 chr4 60836968 60837092 -94793028 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1049 946 305 28 14 chr4 60837108 60837391 -94792729 - B4A SINE B4 -4 288 2 4 1049 381 291 9 46 chr4 60837670 60837778 -94792342 + B4 SINE B4 2 105 -187 4 1049 343 209 0 0 chr4 60837800 60837867 -94792253 - L1VL4 LINE L1 -5604 698 632 4 1049 4278 99 5 22 chr4 60837869 60838500 -94791620 + MMETn-int LTR ERVK 2522 3141 -1703 4 1049 6517 147 21 2 chr4 60838601 60839565 -94790555 + ETnERV2-int LTR ERVK 6222 7203 -203 4 1049 313 247 370 10 chr4 60839568 60839844 -94790276 + RLTR13D6 LTR ERVK 155 531 -371 4 1049 465 113 23 70 chr4 60839844 60839930 -94790190 + ETnERV2-int LTR ERVK 7324 7405 -1 4 1049 1073 201 25 138 chr4 60839930 60840293 -94789827 + RLTRETN_Mm LTR ERVK 1 322 0 4 1049 2603 146 5 0 chr4 60840293 60840696 -94789424 - L1VL4 LINE L1 -5684 618 214 4 1049 3971 163 151 15 chr4 60840691 60841552 -94788568 - L1_Mur2 LINE L1 -2382 3495 2518 4 1049 1683 174 28 9 chr4 60841553 60841877 -94788243 - L1_Mur2 LINE L1 -5941 1145 816 4 1049 243 274 62 88 chr4 60841899 60842091 -94788029 - L1_Mur2 LINE L1 -6375 711 525 4 1049 840 178 95 9 chr4 60842098 60842308 -94787812 + MERVL_2A-int LTR ERVL 5463 5690 -71 4 1049 687 162 52 0 chr4 60842306 60842442 -94787678 + MERVL_2A-int LTR ERVL 5619 5761 0 4 1049 983 216 211 117 chr4 60842442 60842735 -94787385 + MT2A LTR ERVL 1 253 -280 4 1049 2257 132 6 3 chr4 60842735 60843068 -94787052 - L1_Mus2 LINE L1 0 6566 6233 4 1049 983 216 211 117 chr4 60843068 60843261 -94786859 + MT2A LTR ERVL 254 533 0 4 1049 719 207 0 0 chr4 60843656 60843777 -94786343 - B3 SINE B2 -95 121 1 4 1049 994 243 29 0 chr4 60843815 60844025 -94786095 - B3 SINE B2 0 216 1 4 1049 459 78 0 0 chr4 60844934 60844998 -94785122 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1049 225 327 0 75 chr4 60845037 60845143 -94784977 - B3A SINE B2 -99 99 2 4 1049 2482 194 36 74 chr4 60845252 60846720 -94783400 - L1VL4 LINE L1 -4384 1499 261 4 1049 983 109 20 0 chr4 60846746 60846893 -94783227 - L1_Mm LINE L1 -942 4941 4792 4 1049 12676 110 37 66 chr4 60846896 60848589 -94781531 + L1_Mus1 LINE L1 3818 5453 -430 4 1049 7176 99 13 14 chr4 60848589 60849573 -94780547 + L1Md_F2 LINE L1 5588 6570 -12 4 1049 12676 89 10 12 chr4 60849573 60850565 -94779555 + L1_Mus1 LINE L1 5454 6443 -124 4 1049 2851 98 29 27 chr4 60850566 60850976 -94779144 + RLTR10A LTR ERVK 1 411 0 4 1049 1588 146 65 18 chr4 60850976 60851331 -94778789 + IAP-d-int LTR ERVK 57 606 -1381 4 1049 741 229 0 0 chr4 60851325 60851482 -94778638 + IAP-d-int LTR ERVK 347 503 -6039 4 1049 2117 53 114 6 chr4 60851482 60851952 -94778168 + IAP-d-int LTR ERVK 5007 5527 -1015 4 1049 2133 61 141 3 chr4 60851956 60852268 -94777852 + IAP-d-int LTR ERVK 5667 6021 -521 4 1049 5236 69 19 14 chr4 60852278 60852980 -94777140 + RLTR10-int LTR ERVK 1282 1986 -1 4 1049 2279 115 122 34 chr4 60852980 60853358 -94776762 + RLTR10A LTR ERVK 1 411 0 4 1049 746 62 142 9 chr4 60853358 60853471 -94776649 + L1_Mus1 LINE L1 6439 6566 -1 4 1049 1642 47 0 25 chr4 60853481 60853677 -94776443 + B2_Mm1a SINE B2 1 191 -2 4 1049 448 182 0 0 chr4 60854172 60854249 -94775871 + MTA_Mm LTR MaLR 13 89 -330 4 1049 1526 42 5 0 chr4 60854264 60854453 -94775667 + MTA_Mm LTR MaLR 207 396 0 4 1049 361 279 13 0 chr4 60854453 60854532 -94775588 - B3A SINE B2 -118 80 1 4 1049 228 247 83 102 chr4 60854684 60854792 -94775328 - MamSINE1 SINE tRNA -170 120 15 4 1049 341 255 154 47 chr4 60855432 60855601 -94774519 - B3A SINE B2 -9 189 3 4 1049 226 289 53 0 chr4 60855735 60855811 -94774309 + MADE2 DNA Mariner 1 80 0 4 1049 947 262 167 37 chr4 60856197 60856550 -94773570 + MTD LTR MaLR 14 412 -7 4 1049 608 160 8 8 chr4 60856725 60856845 -94773275 - URR1B DNA MER1_type -4 221 102 4 1049 7233 86 12 21 chr4 60856845 60858144 -94771976 - L1Md_F2 LINE L1 -13 6569 5289 4 1049 26 0 0 0 chr4 60858144 60858170 -94771950 + AT_rich Low_complexity Low_complexity 1 26 0 4 1049 3814 43 14 2 chr4 60858170 60858614 -94771506 - L1Md_F3 LINE L1 -4 6580 6132 4 1049 1800 166 19 9 chr4 60858614 60858931 -94771189 + RLTR46 LTR ERVK 1 320 0 4 1049 265 208 50 50 chr4 60859047 60859148 -94770972 + IAPEY3-int LTR ERVK 837 937 -5884 4 1049 658 146 91 0 chr4 60859201 60859311 -94770809 + IAPEY3-int LTR ERVK 940 1059 -6621 4 1049 594 157 191 40 chr4 60859800 60859973 -94770147 + MMERVK10C-int LTR ERVK 435 633 -4773 4 1049 326 140 18 0 chr4 60860052 60860109 -94770011 + MMERVK10C-int LTR ERVK 1089 1146 -4260 4 1049 1430 99 383 11 chr4 60860110 60860483 -94769637 + MMERVK10C-int LTR ERVK 1885 2396 -5185 4 1049 21518 96 40 1 chr4 60860477 60865004 -94765116 + MMERVK10C-int LTR ERVK 2524 7227 -354 4 1049 2133 49 14 29 chr4 60864999 60865274 -94764846 + MMERVK10C-int LTR ERVK 7410 7680 0 4 1049 1872 157 22 13 chr4 60865274 60865591 -94764529 + RLTR46 LTR ERVK 1 320 0 4 1049 1414 42 0 0 chr4 60865591 60865757 -94764363 - L1Md_F3 LINE L1 -447 6137 5972 4 1049 17790 121 232 4 chr4 60865746 60868132 -94761988 - L1Md_F LINE L1 -568 5315 2176 4 1049 4770 151 11 64 chr4 60868132 60868979 -94761141 - RLTR13B4 LTR ERVK -1 802 1 4 1049 17790 137 183 4 chr4 60868979 60870824 -94759296 - L1Md_F LINE L1 -3708 2175 206 4 1049 587 111 0 11 chr4 60870827 60870918 -94759202 + RMER16-int LTR ERVK 2893 2982 -2424 4 1049 845 236 73 5 chr4 60871218 60871410 -94758710 + B3 SINE B2 1 205 -11 4 1049 477 277 13 39 chr4 60871604 60871758 -94758362 - MLT1B LTR MaLR 0 390 241 4 1049 1079 121 0 0 chr4 60871771 60871928 -94758192 + L1_Mus2 LINE L1 6410 6566 0 4 1049 683 210 101 179 chr4 60871928 60872224 -94757896 - MT2A LTR ERVL -260 273 1 4 1049 672 176 59 0 chr4 60872224 60872360 -94757760 - MERVL_2A-int LTR ERVL 0 5761 5618 4 1049 897 159 98 10 chr4 60872364 60872567 -94757553 - MERVL_2A-int LTR ERVL -78 5683 5463 4 1049 253 283 31 23 chr4 60872624 60872754 -94757366 + L1_Mur2 LINE L1 580 710 -6376 4 1049 1631 186 56 6 chr4 60872761 60873080 -94757040 + L1_Mur2 LINE L1 816 1150 -5936 4 1049 3170 206 142 34 chr4 60873067 60873953 -94756167 + L1_Mur2 LINE L1 2511 3492 -2388 4 1049 2404 129 0 3 chr4 60873946 60874303 -94755817 + L1VL4 LINE L1 214 569 -5733 4 1049 900 155 19 19 chr4 60874308 60874466 -94755654 + RLTR9D LTR ERVK 241 398 -5 4 1049 645 165 16 8 chr4 60874479 60874601 -94755519 + L1VL4 LINE L1 575 697 -5605 4 1049 451 282 10 0 chr4 60874624 60874727 -94755393 - B4 SINE B4 -187 105 2 4 1049 431 342 46 64 chr4 60875003 60875112 -94755008 - MER90a LTR ERV1 -18 596 492 4 1049 1140 272 29 4 chr4 60875112 60875392 -94754728 + B4A SINE B4 2 288 -4 4 1049 431 342 46 64 chr4 60875392 60875408 -94754712 - MER90a LTR ERV1 -123 491 481 4 1049 333 68 0 0 chr4 60875408 60875452 -94754668 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1049 431 342 46 64 chr4 60875452 60875653 -94754467 - MER90a LTR ERV1 -134 480 275 4 1049 308 103 0 17 chr4 60876213 60876272 -94753848 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 4 1049 216 286 0 0 chr4 60876571 60876683 -94753437 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 1049 858 264 48 51 chr4 60876683 60876975 -94753145 - B4 SINE B4 0 292 2 4 1049 1074 277 46 18 chr4 60877361 60877644 -94752476 + B4A SINE B4 2 292 0 4 1049 24594 151 24 11 chr4 60877699 60880965 -94749155 - L1_Mus4 LINE L1 -1 6635 3307 4 1049 195 42 0 0 chr4 60880965 60880989 -94749131 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1049 24594 172 13 17 chr4 60880989 60883715 -94746405 - L1_Mus4 LINE L1 -2577 3306 613 4 1049 396 348 21 0 chr4 60883796 60883937 -94746183 - MER90a LTR ERV1 -200 375 232 4 1049 404 316 128 33 chr4 60883951 60884131 -94745989 - MER90a LTR ERV1 -406 208 12 4 1049 255 61 0 0 chr4 60887639 60887672 -94742448 + (CAA)n Simple_repeat Simple_repeat 3 35 0 4 1049 384 40 0 0 chr4 60887672 60887722 -94742398 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1049 182 284 135 0 chr4 60888224 60888298 -94741822 - MIR SINE MIR -106 156 73 4 1049 181 75 24 24 chr4 60889306 60889347 -94740773 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 4 1049 423 245 37 28 chr4 60889691 60889800 -94740320 - B3 SINE B2 0 216 107 4 1049 376 283 114 38 chr4 60889800 60889958 -94740162 + B3 SINE B2 39 208 -8 4 1049 216 400 36 12 chr4 60890203 60890370 -94739750 - MIR SINE MIR -88 174 4 4 1049 444 111 0 0 chr4 60890610 60890682 -94739438 + (TCC)n Simple_repeat Simple_repeat 1 72 0 4 1049 586 307 40 53 chr4 60890746 60890973 -94739147 - B4A SINE B4 -13 279 56 4 1049 337 350 8 16 chr4 60890944 60891066 -94739054 - B1F1 SINE Alu -28 121 1 4 1049 963 216 118 59 chr4 60891616 60891955 -94738165 + RLTR9A LTR ERVK 10 368 0 4 1049 22 35 0 0 chr4 60892262 60892291 -94737829 + AT_rich Low_complexity Low_complexity 1 29 0 4 1049 423 0 0 0 chr4 60892345 60892392 -94737728 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1049 693 206 28 66 chr4 60892392 60892574 -94737546 + RLTR45-int LTR ERVK 2092 2266 -4978 4 1049 243 0 0 0 chr4 60892581 60892608 -94737512 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1049 751 114 9 0 chr4 60892608 60892713 -94737407 - B1_Mm SINE Alu -8 139 34 4 1049 4457 169 41 28 chr4 60892713 60893634 -94736486 + ETnERV2-int LTR ERVK 1259 2191 -5215 4 1049 978 269 9 116 chr4 60893734 60894293 -94735827 + RMER16-int LTR ERVK 1274 1647 -1667 4 1049 525 104 0 0 chr4 60894295 60894372 -94735748 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1049 11706 181 60 44 chr4 60894378 60895750 -94734370 + RMER16-int LTR ERVK 1566 3094 -2714 4 1049 486 0 0 0 chr4 60895750 60895804 -94734316 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1049 11706 176 62 42 chr4 60895804 60896549 -94733571 + RMER16-int LTR ERVK 2862 3601 -1805 4 1049 1021 117 0 14 chr4 60896549 60896688 -94733432 + B1_Mm SINE Alu 2 138 -9 4 1049 303 71 0 0 chr4 60896688 60896730 -94733390 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1049 11706 176 62 42 chr4 60896730 60897297 -94732823 + RMER16-int LTR ERVK 3602 4174 -1232 4 1049 26 0 0 0 chr4 60897377 60897403 -94732717 + AT_rich Low_complexity Low_complexity 1 26 0 4 1049 373 274 33 33 chr4 60897563 60897684 -94732436 + ETnERV2-int LTR ERVK 6305 6425 -981 4 1049 258 222 0 36 chr4 60897890 60897946 -94732174 + ETnERV2-int LTR ERVK 7331 7384 -22 4 1049 913 219 22 97 chr4 60898011 60898289 -94731831 + RLTR9A LTR ERVK 112 368 0 4 1049 852 235 66 5 chr4 60898907 60899104 -94731016 + B3 SINE B2 1 209 -7 4 1049 346 302 16 23 chr4 60899295 60899424 -94730696 - MLT1C LTR MaLR 0 467 340 4 1049 433 266 214 0 chr4 60899627 60899781 -94730339 - MT2A LTR ERVL 0 533 347 4 1049 195 42 0 0 chr4 60899817 60899841 -94730279 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 4 1049 236 203 0 86 chr4 60899957 60899974 -94730146 + 4.5SRNA scRNA scRNA 25 38 -56 4 1049 417 20 0 0 chr4 60899974 60900024 -94730096 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1049 236 203 0 86 chr4 60900024 60900076 -94730044 + 4.5SRNA scRNA scRNA 39 88 -6 4 1049 245 211 0 134 chr4 60900026 60900087 -94730033 + MT2B LTR ERVL 199 257 -344 5 1049 189 0 0 0 chr4 60900087 60900108 -94730012 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 5 1049 245 211 0 134 chr4 60900108 60900128 -94729992 + MT2B LTR ERVL 258 269 -332 5 1049 211 196 0 0 chr4 60900167 60900213 -94729907 + (CAGC)n Simple_repeat Simple_repeat 2 47 0 5 1049 600 50 0 0 chr4 60900340 60900420 -94729700 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1049 639 159 0 0 chr4 60900420 60900533 -94729587 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 5 1049 244 218 0 0 chr4 60900536 60900591 -94729529 + B1_Mus2 SINE Alu 42 96 -51 5 1049 2018 163 65 120 chr4 60900644 60901217 -94728903 - RLTR45-int LTR ERVK -4612 2632 2092 5 1049 624 70 0 0 chr4 60901217 60901303 -94728817 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 1049 228 130 0 0 chr4 60901348 60901394 -94728726 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 5 1049 841 255 11 85 chr4 60901714 60901997 -94728123 - RLTR9A LTR ERVK -5 363 102 5 1049 278 330 25 17 chr4 60902589 60902709 -94727411 + B1F1 SINE Alu 1 121 -28 5 1049 506 335 47 38 chr4 60902696 60902907 -94727213 + B4A SINE B4 67 279 -13 5 1049 230 209 0 29 chr4 60902982 60903051 -94727069 + GA-rich Low_complexity Low_complexity 2 68 0 5 1049 448 322 32 43 chr4 60903283 60903468 -94726652 + MIR SINE MIR 9 191 -71 5 1049 413 340 57 0 chr4 60903874 60904033 -94726087 - B3 SINE B2 -10 206 39 5 1049 430 296 19 0 chr4 60904033 60904141 -94725979 + B3 SINE B2 107 216 0 5 1049 225 0 0 0 chr4 60904619 60904644 -94725476 + (CTG)n Simple_repeat Simple_repeat 1 25 0 5 1049 187 267 105 13 chr4 60905512 60905588 -94724532 + MIR SINE MIR 74 156 -106 5 1049 220 380 0 0 chr4 60908904 60908975 -94721145 - AluF_3 SINE Alu -103 208 138 5 1049 431 306 232 42 chr4 60909581 60909939 -94720181 + MER90a LTR ERV1 12 437 -177 5 1049 19218 162 97 13 chr4 60910049 60914895 -94715225 + L1_Mus4 LINE L1 1354 6633 -3 5 1049 1107 274 47 4 chr4 60914977 60915252 -94714868 - B4A SINE B4 -4 288 2 5 1049 702 269 30 126 chr4 60915633 60915928 -94714192 + B4 SINE B4 2 269 -23 5 1049 570 41 0 0 chr4 60915928 60916001 -94714119 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1049 194 180 0 16 chr4 60916312 60916374 -94713746 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 5 1049 306 357 44 19 chr4 60916734 60916894 -94713226 + MER90a LTR ERV1 12 175 -439 5 1049 311 362 36 30 chr4 60916924 60917092 -94713028 + MER90a LTR ERV1 269 437 -177 5 1049 618 104 0 0 chr4 60917133 60917229 -94712891 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1049 915 296 36 14 chr4 60917245 60917526 -94712594 - B4A SINE B4 -4 288 2 5 1049 381 291 9 46 chr4 60917805 60917913 -94712207 + B4 SINE B4 2 105 -187 5 1049 357 206 0 0 chr4 60917938 60918006 -94712114 - L1VL2 LINE L1 -5584 751 684 5 1049 4130 94 25 28 chr4 60918006 60918642 -94711478 + MMETn-int LTR ERVK 2524 3157 -1687 5 1049 6463 147 21 2 chr4 60918727 60919691 -94710429 + ETnERV2-int LTR ERVK 6222 7203 -203 5 1049 282 247 367 11 chr4 60919694 60919970 -94710150 + RLTR13B1 LTR ERVK 155 531 -371 5 1049 504 100 23 70 chr4 60919970 60920056 -94710064 + ETnERV2-int LTR ERVK 7324 7405 -1 5 1049 1081 211 25 135 chr4 60920056 60920418 -94709702 + RLTRETN_Mm LTR ERVK 1 322 0 5 1049 2599 144 5 0 chr4 60920418 60920821 -94709299 - L1VL4 LINE L1 -5684 618 214 5 1049 3998 161 151 15 chr4 60920816 60921677 -94708443 - L1_Mur2 LINE L1 -2382 3495 2518 5 1049 1616 187 28 9 chr4 60921678 60922002 -94708118 - L1_Mur2 LINE L1 -5941 1145 816 5 1049 250 267 62 93 chr4 60922024 60922218 -94707902 - L1_Mur2 LINE L1 -6375 711 524 5 1049 900 158 61 187 chr4 60922223 60922565 -94707555 + MERVL_2A-int LTR ERVL 5463 5761 0 5 1049 889 236 199 105 chr4 60922565 60922858 -94707262 + MT2A LTR ERVL 1 259 -274 5 1049 2246 136 6 3 chr4 60922858 60923191 -94706929 - L1_Mus2 LINE L1 0 6566 6233 5 1049 889 236 199 105 chr4 60923191 60923384 -94706736 + MT2A LTR ERVL 260 532 -1 5 1049 719 207 0 0 chr4 60923779 60923900 -94706220 - B3 SINE B2 -95 121 1 5 1049 994 243 29 0 chr4 60923938 60924148 -94705972 - B3 SINE B2 0 216 1 5 1049 423 83 0 0 chr4 60925057 60925117 -94705003 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1049 225 327 0 75 chr4 60925156 60925262 -94704858 - B3A SINE B2 -99 99 2 5 1049 2482 194 36 74 chr4 60925371 60926839 -94703281 - L1VL4 LINE L1 -4384 1499 261 5 1049 983 109 20 0 chr4 60926865 60927012 -94703108 - L1_Mm LINE L1 -942 4941 4792 5 1049 12652 111 37 66 chr4 60927015 60928708 -94701412 + L1_Mus1 LINE L1 3818 5453 -430 5 1049 7199 98 13 13 chr4 60928708 60929691 -94700429 + L1Md_F2 LINE L1 5588 6570 -12 5 1049 12652 88 10 12 chr4 60929691 60930683 -94699437 + L1_Mus1 LINE L1 5454 6443 -124 5 1049 2851 98 29 27 chr4 60930684 60931094 -94699026 + RLTR10A LTR ERVK 1 411 0 5 1049 1599 143 65 18 chr4 60931094 60931449 -94698671 + IAP-d-int LTR ERVK 57 606 -1381 5 1049 741 229 0 0 chr4 60931443 60931600 -94698520 + IAP-d-int LTR ERVK 347 503 -6039 5 1049 2059 55 114 8 chr4 60931600 60932071 -94698049 + IAP-d-int LTR ERVK 5007 5527 -1015 5 1049 2133 61 141 3 chr4 60932075 60932387 -94697733 + IAP-d-int LTR ERVK 5667 6021 -521 5 1049 5236 69 19 14 chr4 60932397 60933099 -94697021 + RLTR10-int LTR ERVK 1282 1986 -1 5 1049 2279 115 122 34 chr4 60933099 60933477 -94696643 + RLTR10A LTR ERVK 1 411 0 5 1049 746 62 142 9 chr4 60933477 60933590 -94696530 + L1_Mus1 LINE L1 6439 6566 -1 5 1049 1642 47 0 25 chr4 60933600 60933796 -94696324 + B2_Mm1a SINE B2 1 191 -2 5 1049 448 182 0 0 chr4 60934291 60934368 -94695752 + MTA_Mm LTR MaLR 13 89 -330 5 1049 1526 42 5 0 chr4 60934383 60934572 -94695548 + MTA_Mm LTR MaLR 207 396 0 5 1049 361 279 13 0 chr4 60934572 60934651 -94695469 - B3A SINE B2 -118 80 1 5 1049 228 247 83 102 chr4 60934803 60934911 -94695209 - MamSINE1 SINE tRNA -170 120 15 5 1049 341 255 154 47 chr4 60935551 60935720 -94694400 - B3A SINE B2 -9 189 3 5 1049 226 289 53 0 chr4 60935854 60935930 -94694190 + MADE2 DNA Mariner 1 80 0 5 1049 947 262 167 37 chr4 60936316 60936669 -94693451 + MTD LTR MaLR 14 412 -7 5 1049 608 160 8 8 chr4 60936844 60936964 -94693156 - URR1B DNA MER1_type -4 221 102 5 1049 7224 82 15 16 chr4 60936964 60938262 -94691858 - L1Md_F2 LINE L1 -13 6569 5289 5 1049 26 0 0 0 chr4 60938262 60938288 -94691832 + AT_rich Low_complexity Low_complexity 1 26 0 5 1049 3861 43 11 2 chr4 60938288 60938733 -94691387 - L1Md_F3 LINE L1 -4 6580 6132 5 1049 1800 166 19 9 chr4 60938733 60939050 -94691070 + RLTR46 LTR ERVK 1 320 0 5 1049 265 208 50 50 chr4 60939166 60939267 -94690853 + IAPEY3-int LTR ERVK 837 937 -5884 5 1049 658 146 91 0 chr4 60939320 60939430 -94690690 + IAPEY3-int LTR ERVK 940 1059 -6621 5 1049 594 153 306 19 chr4 60939944 60940134 -94689986 + RMER16-int LTR ERVK 435 633 -4773 5 1049 326 140 18 0 chr4 60940196 60940253 -94689867 + MMERVK10C-int LTR ERVK 1089 1146 -4260 5 1049 1430 99 383 11 chr4 60940254 60940627 -94689493 + MMERVK10C-int LTR ERVK 1885 2396 -5185 5 1049 21505 100 39 3 chr4 60940621 60945418 -94684702 + MMERVK10C-int LTR ERVK 2524 7513 0 5 1049 1736 157 22 13 chr4 60945418 60945735 -94684385 + RLTR46 LTR ERVK 1 320 0 5 1049 1325 42 0 0 chr4 60945735 60945901 -94684219 - L1Md_F3 LINE L1 -447 6137 5972 5 1049 16146 121 232 4 chr4 60945890 60948276 -94681844 - L1Md_F LINE L1 -568 5315 2176 5 131 4395 149 11 64 chr4 60948276 60949123 -94680997 - RLTR13B4 LTR ERVK -1 802 1 5 1050 16146 138 182 4 chr4 60949123 60950968 -94679152 - L1Md_F LINE L1 -3708 2175 206 5 1050 538 111 0 11 chr4 60950971 60951062 -94679058 + RMER16-int LTR ERVK 2893 2982 -2424 5 1050 769 236 73 5 chr4 60951362 60951554 -94678566 + B3 SINE B2 1 205 -11 5 1050 483 284 13 39 chr4 60951748 60951902 -94678218 - MLT1B LTR MaLR 0 390 241 5 1050 1009 121 0 0 chr4 60951915 60952072 -94678048 + L1_Mus2 LINE L1 6410 6566 0 5 1050 703 206 101 179 chr4 60952072 60952368 -94677752 - MT2A LTR ERVL -260 273 1 5 1050 610 176 59 0 chr4 60952368 60952504 -94677616 - MERVL_2A-int LTR ERVL 0 5761 5618 5 1050 796 159 98 10 chr4 60952508 60952711 -94677409 - MERVL_2A-int LTR ERVL -78 5683 5463 5 1050 1496 184 57 6 chr4 60952905 60953222 -94676898 + L1_Mur2 LINE L1 816 1148 -5938 5 1050 2734 208 143 34 chr4 60953211 60954096 -94676024 + L1_Mur2 LINE L1 2511 3492 -2388 5 1050 2258 129 0 3 chr4 60954089 60954446 -94675674 + L1VL4 LINE L1 214 569 -5733 5 1050 900 155 19 19 chr4 60954451 60954609 -94675511 + RLTR9D LTR ERVK 241 398 -5 5 1050 599 165 16 8 chr4 60954622 60954744 -94675376 + L1VL4 LINE L1 575 697 -5605 5 1050 449 282 10 0 chr4 60954767 60954870 -94675250 - B4 SINE B4 -187 105 2 5 1050 18104 167 10 18 chr4 60954973 60956695 -94673425 - L1VL4 LINE L1 -856 5027 3307 5 1050 195 42 0 0 chr4 60956695 60956719 -94673401 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1050 18104 171 13 19 chr4 60956719 60959442 -94670678 - L1VL4 LINE L1 -2577 3306 613 5 1050 354 330 84 11 chr4 60959523 60959701 -94670419 - MER90a LTR ERV1 -200 375 185 5 1050 400 321 89 41 chr4 60959712 60959858 -94670262 - MER90a LTR ERV1 -450 164 12 5 1050 255 61 0 0 chr4 60963366 60963399 -94666721 + (CAA)n Simple_repeat Simple_repeat 3 35 0 5 1050 402 39 0 0 chr4 60963399 60963451 -94666669 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1050 187 284 135 0 chr4 60963953 60964027 -94666093 - MIR SINE MIR -106 156 73 5 1050 195 69 0 0 chr4 60965036 60965065 -94665055 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1050 468 217 37 28 chr4 60965410 60965519 -94664601 - B3 SINE B2 0 216 107 5 1050 407 276 114 38 chr4 60965519 60965677 -94664443 + B3 SINE B2 39 208 -8 5 1050 289 382 36 12 chr4 60966095 60966262 -94663858 - MIR SINE MIR -88 174 4 5 1050 368 118 15 0 chr4 60966502 60966570 -94663550 + (TCC)n Simple_repeat Simple_repeat 1 69 0 5 1050 657 325 25 42 chr4 60966621 60966862 -94663258 - B4A SINE B4 0 292 56 5 1050 367 325 8 17 chr4 60966833 60966952 -94663168 - B1F1 SINE Alu -28 121 4 5 1050 951 227 112 50 chr4 60967506 60967844 -94662276 + RLTR9A LTR ERVK 10 368 0 5 1050 239 0 32 0 chr4 60968159 60968190 -94661930 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1050 561 15 0 0 chr4 60968244 60968310 -94661810 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1050 588 212 28 66 chr4 60968310 60968492 -94661628 + RLTR45-int LTR ERVK 2092 2266 -4978 5 1050 786 116 9 0 chr4 60968509 60968621 -94661499 - B1_Mm SINE Alu -1 146 34 5 1050 3980 173 31 31 chr4 60968621 60969554 -94660566 + ETnERV2-int LTR ERVK 1259 2191 -5215 5 1050 5962 238 16 93 chr4 60969654 60970244 -94659876 + RMER16-int LTR ERVK 2297 2629 -3179 5 1050 1242 95 0 0 chr4 60970244 60970423 -94659697 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1050 8059 179 56 36 chr4 60970423 60972492 -94657628 + RMER16-int LTR ERVK 1566 4094 -3312 5 1050 23 0 0 0 chr4 60972589 60972612 -94657508 + AT_rich Low_complexity Low_complexity 1 23 0 5 1050 330 274 33 33 chr4 60972772 60972893 -94657227 + RMER16-int LTR ERVK 6305 6425 -981 5 1050 880 231 22 97 chr4 60973220 60973498 -94656622 + RLTR9A LTR ERVK 112 368 0 5 1050 741 245 66 5 chr4 60974116 60974313 -94655807 + B3 SINE B2 1 209 -7 5 1050 367 283 24 24 chr4 60974504 60974627 -94655493 - MLT1B LTR MaLR 0 390 268 6 1050 492 247 214 0 chr4 60974836 60974990 -94655130 - MT2A LTR ERVL 0 533 347 6 1050 195 42 0 0 chr4 60975027 60975051 -94655069 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 6 1050 219 36 0 0 chr4 60975109 60975137 -94654983 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 6 1050 546 54 0 0 chr4 60975187 60975261 -94654859 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1050 265 197 0 0 chr4 60975263 60975324 -94654796 + B1_Mus2 SINE Alu 42 102 -45 6 1050 384 22 0 0 chr4 60975324 60975369 -94654751 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 6 1050 222 105 0 0 chr4 60975585 60975623 -94654497 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1050 546 163 0 0 chr4 60975623 60975721 -94654399 + (CAGAGA)n Simple_repeat Simple_repeat 1 98 0 6 1050 295 175 0 31 chr4 60975721 60975786 -94654334 + B1_Mus2 SINE Alu 42 104 -43 6 1050 1850 164 67 93 chr4 60975829 60976380 -94653740 - RLTR45-int LTR ERVK -4612 2632 2096 6 1050 546 54 0 0 chr4 60976380 60976454 -94653666 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1050 228 130 0 0 chr4 60976499 60976545 -94653575 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 6 1050 793 266 11 85 chr4 60976865 60977148 -94652972 - RLTR9A LTR ERVK -5 363 102 6 1050 245 299 41 49 chr4 60977739 60977862 -94652258 + ID_B1 SINE B4 82 203 -21 6 1050 536 346 38 28 chr4 60977845 60978056 -94652064 + B4A SINE B4 67 279 -13 6 1050 257 200 0 28 chr4 60978131 60978203 -94651917 + GA-rich Low_complexity Low_complexity 2 71 0 6 1050 467 322 32 43 chr4 60978436 60978621 -94651499 + MIR SINE MIR 9 191 -71 6 1050 426 333 57 0 chr4 60979027 60979186 -94650934 - B3 SINE B2 -10 206 39 6 1050 432 296 19 0 chr4 60979186 60979294 -94650826 + B3 SINE B2 107 216 0 6 1050 198 0 0 0 chr4 60981222 60981244 -94648876 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1050 24592 14 1 0 chr4 60981959 60984925 -94645195 + L1Md_A LINE L1 2619 5586 -297 6 1050 8818 14 0 1 chr4 60984925 60985922 -94644198 + L1Md_A LINE L1 5587 6582 0 6 1050 226 380 0 0 chr4 60988048 60988119 -94642001 - AluF_3 SINE Alu -103 208 138 6 1050 425 340 221 31 chr4 60988726 60989084 -94641036 + MER90a LTR ERV1 12 437 -177 6 1050 20273 165 33 11 chr4 60989194 60994353 -94635767 + L1_Mus4 LINE L1 1354 6633 -3 6 1050 945 277 47 4 chr4 60994437 60994712 -94635408 - B4A SINE B4 -4 288 2 6 1050 728 269 27 119 chr4 60995095 60995390 -94634730 + B4 SINE B4 2 269 -23 6 1050 639 124 0 0 chr4 60995390 60995503 -94634617 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1050 296 119 0 17 chr4 60995815 60995875 -94634245 + (CCCTAA)n Simple_repeat Simple_repeat 3 61 0 6 1050 270 350 68 41 chr4 60996241 60996387 -94633733 + MER90a LTR ERV1 26 175 -439 6 1050 378 329 90 12 chr4 60996417 60996583 -94633537 + MER90a LTR ERV1 269 447 -167 6 1050 765 303 43 14 chr4 60996675 60996953 -94633167 - B4A SINE B4 -5 287 2 6 1050 228 147 69 138 chr4 60996992 60997079 -94633041 + LTR85a LTR Gypsy? 360 440 -262 6 1050 417 272 9 46 chr4 60997231 60997339 -94632781 + B4 SINE B4 2 105 -187 6 1050 328 206 0 0 chr4 60997364 60997432 -94632688 - L1VL4 LINE L1 -5607 695 628 6 1050 390 97 0 16 chr4 60997462 60997525 -94632595 - B2_Mm2 SINE B2 -93 102 41 6 1050 1954 67 0 44 chr4 60997525 60997822 -94632298 + MMETn-int LTR ERVK 2858 3141 -1703 6 1050 6034 146 21 2 chr4 60997923 60998887 -94631233 + ETnERV2-int LTR ERVK 6222 7203 -203 6 1050 338 233 370 10 chr4 60998890 60999166 -94630954 + RLTR13D6 LTR ERVK 155 531 -371 6 1050 432 80 25 74 chr4 60999169 60999250 -94630870 + ETnERV2-int LTR ERVK 7327 7403 -3 6 1050 1029 198 25 140 chr4 60999252 60999616 -94630504 + RLTRETN_Mm LTR ERVK 1 322 0 6 1050 2408 130 29 0 chr4 60999616 61000000 -94630120 - L1VL4 LINE L1 -5684 618 224 6 1050 2567 146 14 8 chr4 61000018 61000508 -94629612 - L1_Mur2 LINE L1 -2395 3482 2990 1 1050 2022 153 8 27 chr4 61000493 61000868 -94629252 - L1_Mur2 LINE L1 -2993 2884 2517 1 1050 1646 210 48 8 chr4 61000867 61001266 -94628854 - L1_Mur2 LINE L1 -5940 1146 732 1 1050 779 184 101 5 chr4 61001412 61001620 -94628500 + MERVL_2A-int LTR ERVL 5463 5690 -71 2 1050 233 209 86 43 chr4 61001628 61001698 -94628422 + ORR1A3-int LTR MaLR 567 639 -1324 3 1050 996 223 211 119 chr4 61001754 61002048 -94628072 + MT2A LTR ERVL 1 253 -280 4 1050 2219 120 3 3 chr4 61002048 61002382 -94627738 - L1_Mus2 LINE L1 0 6566 6233 5 1050 996 223 211 119 chr4 61002382 61002575 -94627545 + MT2A LTR ERVL 254 533 0 4 1050 707 215 0 0 chr4 61002969 61003090 -94627030 - B3 SINE B2 -95 121 1 6 1050 1033 244 5 0 chr4 61003134 61003343 -94626777 - B3 SINE B2 -6 210 1 7 1050 280 256 128 70 chr4 61004249 61004421 -94625699 - B3A SINE B2 -15 183 2 8 1050 1750 130 25 8 chr4 61004532 61005208 -94624912 - L1Md_F LINE L1 -4386 1497 870 9 1050 32964 55 1 20 chr4 61055208 61060432 -94569688 - L1Md_F LINE L1 -563 5320 196 1 1050 405 221 0 0 chr4 61060444 61060521 -94569599 + MTA_Mm LTR MaLR 13 89 -332 1 1050 1514 61 0 25 chr4 61060524 61060727 -94569393 + MTA_Mm LTR MaLR 199 396 0 1 1050 405 215 13 0 chr4 61060727 61060806 -94569314 - B3A SINE B2 -118 80 1 1 1050 426 20 0 0 chr4 61063072 61063123 -94566997 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1050 257 320 0 74 chr4 61063154 61063262 -94566858 - B3A SINE B2 -96 102 3 1 1050 230 267 66 13 chr4 61063396 61063472 -94566648 + MADE2 DNA Mariner 1 80 0 1 1050 975 276 155 28 chr4 61063863 61064217 -94565903 + MTD LTR MaLR 14 412 -7 1 1050 597 168 8 8 chr4 61064392 61064512 -94565608 - URR1B DNA MER1_type -4 221 102 1 1050 7195 82 15 3 chr4 61064512 61065784 -94564336 - L1Md_F2 LINE L1 -13 6569 5289 1 1050 23 0 0 0 chr4 61065784 61065807 -94564313 + AT_rich Low_complexity Low_complexity 1 23 0 1 1050 3795 46 23 0 chr4 61065807 61066245 -94563875 - L1Md_F3 LINE L1 -5 6579 6132 2 1050 1962 147 19 22 chr4 61066245 61066566 -94563554 + RLTR46 LTR ERVK 1 320 0 2 1050 264 234 52 0 chr4 61066681 61066758 -94563362 + IAPEY3-int LTR ERVK 836 916 -5905 2 1050 389 151 137 0 chr4 61066836 61066909 -94563211 + IAPEY3-int LTR ERVK 940 1022 -6658 2 1050 634 155 191 39 chr4 61067444 61067634 -94562486 + RMER16-int LTR ERVK 435 637 -4769 2 1050 349 123 18 0 chr4 61067696 61067753 -94562367 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 1050 1418 127 122 0 chr4 61067754 61067991 -94562129 + MMERVK10C-int LTR ERVK 1885 2150 -5431 2 1050 868 81 78 31 chr4 61067999 61068127 -94561993 + MMERVK10C-int LTR ERVK 2263 2396 -5185 2 1050 12030 82 60 2 chr4 61068121 61069928 -94560192 + MMERVK10C-int LTR ERVK 2524 4436 -3145 2 1050 5610 171 21 27 chr4 61069929 61071242 -94558878 + L1Md_T LINE L1 99 1205 -5411 2 1050 37043 34 0 0 chr4 61071248 61075666 -94554454 + L1Md_T LINE L1 1170 5586 -297 2 1050 8516 56 0 0 chr4 61075666 61076662 -94553458 + L1Md_T LINE L1 5587 6582 0 2 131 10719 108 22 3 chr4 61076662 61079677 -94550443 + MMERVK10C-int LTR ERVK 4426 7513 0 2 1051 1750 176 22 13 chr4 61079677 61079994 -94550126 + RLTR46 LTR ERVK 1 320 0 2 1051 1359 54 0 0 chr4 61079994 61080160 -94549960 - L1Md_F3 LINE L1 -447 6137 5972 2 1051 17791 121 232 7 chr4 61080149 61081256 -94548864 - L1Md_F LINE L1 -568 5315 4211 2 1051 3752 20 0 0 chr4 61081256 61081652 -94548468 - MTA_Mm LTR MaLR 0 396 1 2 1051 10030 25 2 0 chr4 61081652 61082748 -94547372 - MTA_Mm-int LTR MaLR 0 1098 1 2 1051 3752 20 0 0 chr4 61082748 61083144 -94546976 - MTA_Mm LTR MaLR 0 396 1 2 1051 17791 121 232 7 chr4 61083144 61084429 -94545691 - L1Md_F LINE L1 -1673 4210 2176 2 1051 4721 153 11 64 chr4 61084429 61085276 -94544844 - RLTR13B4 LTR ERVK -1 802 1 3 1051 17791 136 184 6 chr4 61085276 61087119 -94543001 - L1Md_F LINE L1 -3708 2175 206 2 1051 587 111 0 11 chr4 61087122 61087213 -94542907 + RMER16-int LTR ERVK 2893 2982 -2424 3 1051 308 103 0 17 chr4 61087688 61087747 -94542373 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 3 1051 715 311 36 70 chr4 61088102 61088133 -94541987 - B4 SINE B4 0 292 270 3 1051 372 43 0 0 chr4 61088133 61088179 -94541941 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1051 715 311 36 70 chr4 61088179 61088448 -94541672 - B4 SINE B4 -23 269 2 3 1051 1059 281 46 18 chr4 61088834 61089117 -94541003 + B4A SINE B4 2 292 0 3 1051 24501 153 24 9 chr4 61089171 61092437 -94537683 - L1_Mus4 LINE L1 -1 6635 3307 3 1051 396 0 0 0 chr4 61092437 61092481 -94537639 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1051 24501 175 13 15 chr4 61092481 61095193 -94534927 - L1_Mus4 LINE L1 -2577 3306 613 3 1051 396 312 84 11 chr4 61095274 61095452 -94534668 - MER90a LTR ERV1 -200 375 185 3 1051 401 321 89 41 chr4 61095463 61095609 -94534511 - MER90a LTR ERV1 -450 164 12 3 1051 432 37 0 0 chr4 61099117 61099171 -94530949 + (CAA)n Simple_repeat Simple_repeat 3 56 0 3 1051 182 284 135 0 chr4 61099696 61099770 -94530350 - MIR SINE MIR -106 156 73 4 1051 450 217 37 28 chr4 61101160 61101269 -94528851 - B3 SINE B2 0 216 107 4 1051 329 296 114 38 chr4 61101269 61101427 -94528693 + B3 SINE B2 39 208 -8 4 1051 199 380 48 24 chr4 61101672 61101839 -94528281 - MIR SINE MIR -88 174 4 4 1051 231 152 0 0 chr4 61102079 61102125 -94527995 + CT-rich Low_complexity Low_complexity 3 48 0 4 1051 571 307 40 53 chr4 61102194 61102421 -94527699 - B4A SINE B4 -13 279 56 4 1051 308 358 8 16 chr4 61102392 61102514 -94527606 - B1F1 SINE Alu -28 121 1 4 1051 967 210 118 59 chr4 61103065 61103404 -94526716 + RLTR9A LTR ERVK 10 368 0 4 1051 22 35 0 0 chr4 61103711 61103740 -94526380 + AT_rich Low_complexity Low_complexity 1 29 0 4 1051 435 19 0 0 chr4 61103793 61103845 -94526275 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1051 714 200 28 66 chr4 61103845 61104027 -94526093 + RLTR45-int LTR ERVK 2092 2266 -4978 5 1051 814 98 9 0 chr4 61104057 61104169 -94525951 - B1_Mm SINE Alu -1 146 34 5 1051 4406 175 40 26 chr4 61104169 61105089 -94525031 + ETnERV2-int LTR ERVK 1259 2191 -5215 5 1051 6801 242 26 55 chr4 61105189 61105736 -94524384 + ETnERV2-int LTR ERVK 2189 2532 -4874 5 1051 908 132 0 7 chr4 61105736 61105889 -94524231 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 5 1051 6801 208 32 52 chr4 61105889 61107234 -94522886 + ETnERV2-int LTR ERVK 2180 3878 -3528 5 1051 846 235 66 5 chr4 61107449 61107646 -94522474 + B3 SINE B2 1 209 -7 5 1051 356 292 24 24 chr4 61107837 61107960 -94522160 - MLT1B LTR MaLR 0 390 268 5 1051 401 266 128 7 chr4 61108169 61108332 -94521788 - MT2A LTR ERVL 0 584 347 5 1051 195 42 0 0 chr4 61108360 61108384 -94521736 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 5 1051 507 17 0 0 chr4 61108517 61108577 -94521543 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1051 245 197 0 134 chr4 61108579 61108640 -94521480 + MT2B LTR ERVL 199 257 -344 6 1051 477 0 0 0 chr4 61108640 61108693 -94521427 + (CAGA)n Simple_repeat Simple_repeat 3 55 0 6 1051 245 197 0 134 chr4 61108693 61108713 -94521407 + MT2B LTR ERVL 258 269 -332 6 1051 267 93 0 0 chr4 61108755 61108798 -94521322 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 6 1051 423 52 0 0 chr4 61108925 61108983 -94521137 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1051 252 175 0 100 chr4 61109003 61109023 -94521097 + B1_Mus2 SINE Alu 42 59 -88 6 1051 237 0 0 160 chr4 61109023 61109229 -94520891 + (CAGGG)n Simple_repeat Simple_repeat 4 176 0 6 1051 252 175 0 100 chr4 61109229 61109278 -94520842 + B1_Mus2 SINE Alu 60 104 -43 6 1051 2046 157 64 128 chr4 61109321 61109899 -94520221 - RLTR45-int LTR ERVK -4612 2632 2092 6 1051 600 27 0 0 chr4 61109899 61109973 -94520147 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1051 228 130 0 0 chr4 61110018 61110064 -94520056 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 6 1051 817 263 11 85 chr4 61110384 61110667 -94519453 - RLTR9A LTR ERVK -5 363 102 6 1051 260 370 17 8 chr4 61111259 61111379 -94518741 + B1F1 SINE Alu 1 121 -28 7 1051 527 325 47 38 chr4 61111366 61111577 -94518543 + B4A SINE B4 67 279 -13 7 1051 230 209 0 29 chr4 61111651 61111720 -94518400 + GA-rich Low_complexity Low_complexity 2 68 0 7 1051 443 322 32 43 chr4 61111949 61112134 -94517986 + MIR SINE MIR 9 191 -71 7 1051 423 333 57 0 chr4 61112540 61112699 -94517421 - B3 SINE B2 -10 206 39 7 1051 441 287 19 0 chr4 61112699 61112807 -94517313 + B3 SINE B2 107 216 0 7 1051 201 39 0 0 chr4 61113276 61113302 -94516818 + (CTG)n Simple_repeat Simple_repeat 1 26 0 7 1051 216 370 25 0 chr4 61117552 61117633 -94512487 - AluG_3 SINE Alu -91 220 138 7 1051 456 297 232 42 chr4 61118241 61118599 -94511521 + MER90a LTR ERV1 12 437 -177 7 1051 19139 183 19 73 chr4 61118701 61124311 -94505809 + L1_Mus4 LINE L1 1347 6633 -3 7 1051 1034 281 47 4 chr4 61124393 61124668 -94505452 - B4A SINE B4 -4 288 2 8 1051 586 274 58 129 chr4 61125050 61125337 -94504783 + B4 SINE B4 2 269 -23 8 1051 462 49 0 0 chr4 61125337 61125398 -94504722 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1051 206 167 0 16 chr4 61125710 61125771 -94504349 + (CCCTAA)n Simple_repeat Simple_repeat 4 63 0 8 1051 345 344 44 19 chr4 61126131 61126291 -94503829 + MER90a LTR ERV1 12 175 -439 8 1051 291 368 36 30 chr4 61126321 61126489 -94503631 + MER90a LTR ERV1 269 437 -177 8 1051 672 98 0 0 chr4 61126530 61126632 -94503488 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1051 935 308 28 14 chr4 61126648 61126931 -94503189 - B4A SINE B4 -4 288 2 8 1051 366 291 9 46 chr4 61127210 61127318 -94502802 + B4 SINE B4 2 105 -187 8 1051 338 176 44 0 chr4 61127340 61127408 -94502712 - L1VL4 LINE L1 -5604 698 628 8 1051 4183 101 6 24 chr4 61127408 61128037 -94502083 + MMETn-int LTR ERVK 2524 3141 -1703 8 1051 6464 152 21 1 chr4 61128138 61129101 -94501019 + ETnERV2-int LTR ERVK 6222 7203 -203 9 1051 289 258 370 10 chr4 61129104 61129380 -94500740 + RLTR13D6 LTR ERVK 155 531 -371 9 1051 499 100 23 70 chr4 61129380 61129466 -94500654 + ETnERV2-int LTR ERVK 7324 7405 -1 9 1051 1065 201 24 154 chr4 61129466 61129836 -94500284 + RLTRETN_Mm LTR ERVK 1 322 0 9 1051 2514 149 20 0 chr4 61129836 61130233 -94499887 - L1VL4 LINE L1 -5684 618 214 8 1051 3948 164 151 19 chr4 61130228 61131092 -94499028 - L1_Mur2 LINE L1 -2382 3495 2518 9 1051 1682 216 180 26 chr4 61131093 61131631 -94498489 - L1_Mur2 LINE L1 -5941 1145 525 9 1051 909 164 95 9 chr4 61131638 61131848 -94498272 + MERVL_2A-int LTR ERVL 5463 5690 -71 9 1051 685 162 52 0 chr4 61131846 61131982 -94498138 + MERVL_2A-int LTR ERVL 5619 5761 0 9 1051 914 223 211 117 chr4 61131982 61132275 -94497845 + MT2A LTR ERVL 1 253 -280 9 1051 2245 136 6 3 chr4 61132275 61132608 -94497512 - L1_Mus2 LINE L1 0 6566 6233 9 1051 914 223 211 117 chr4 61132608 61132801 -94497319 + MT2A LTR ERVL 254 533 0 9 1051 640 240 0 0 chr4 61133196 61133317 -94496803 - B3 SINE B2 -95 121 1 9 1051 992 248 29 0 chr4 61133355 61133565 -94496555 - B3 SINE B2 0 216 1 9 1051 405 86 0 0 chr4 61134474 61134532 -94495588 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1051 225 327 0 75 chr4 61134571 61134677 -94495443 - B3A SINE B2 -99 99 2 9 1051 2484 196 33 68 chr4 61134789 61136256 -94493864 - MusHAL1 LINE L1 -4387 1496 261 9 1051 942 112 21 0 chr4 61136282 61136425 -94493695 - L1_Mm LINE L1 -942 4941 4796 1 1051 421 310 100 29 chr4 61136432 61136811 -94493309 - Arthur1 DNA Tip100 -95 3852 3447 1 1051 8502 16 0 0 chr4 61137031 61138003 -94492117 - L1_Mm LINE L1 -2005 3878 2907 1 1051 4037 16 0 16 chr4 61138003 61138505 -94491615 + L1Md_T LINE L1 6142 6582 0 1 1051 399 141 11 68 chr4 61138702 61138892 -94491228 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1051 439 138 28 28 chr4 61138995 61139137 -94490983 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1051 28 29 0 0 chr4 61139259 61139294 -94490826 + AT_rich Low_complexity Low_complexity 1 35 0 1 1051 1556 89 0 0 chr4 61139506 61139709 -94490411 + L1Md_F2 LINE L1 5384 5586 -297 1 1051 7248 93 19 13 chr4 61139710 61140687 -94489433 + L1Md_F2 LINE L1 5588 6570 -12 1 1051 6429 83 6 4 chr4 61140687 61141679 -94488441 + L1_Mus1 LINE L1 5450 6443 -124 1 1051 2794 108 29 27 chr4 61141680 61142090 -94488030 + RLTR10A LTR ERVK 1 411 0 1 1051 1578 198 97 39 chr4 61142090 61142721 -94487399 + IAP-d-int LTR ERVK 57 606 -1381 1 1051 2140 53 116 6 chr4 61142721 61143190 -94486930 + IAP-d-int LTR ERVK 5007 5527 -1015 1 1051 2090 71 141 3 chr4 61143194 61143506 -94486614 + IAP-d-int LTR ERVK 5667 6021 -521 1 1051 5171 74 19 14 chr4 61143516 61144215 -94485905 + RLTR10-int LTR ERVK 1282 1983 -4 1 1051 2388 96 122 34 chr4 61144219 61144597 -94485523 + RLTR10A LTR ERVK 1 411 0 1 1051 779 62 143 0 chr4 61144597 61144709 -94485411 + L1_Mus1 LINE L1 6439 6566 -1 1 1051 1637 42 0 30 chr4 61144719 61144918 -94485202 + B2_Mm1a SINE B2 1 193 0 1 1051 239 276 53 0 chr4 61144970 61145046 -94485074 + MADE2 DNA Mariner 1 80 0 1 1051 450 188 0 0 chr4 61145403 61145483 -94484637 + MTA_Mm LTR MaLR 10 89 -330 1 1051 1486 58 5 0 chr4 61145498 61145687 -94484433 + MTA_Mm LTR MaLR 207 396 0 1 1051 350 291 13 0 chr4 61145687 61145766 -94484354 - B3A SINE B2 -118 80 1 1 1051 228 247 83 102 chr4 61145918 61146026 -94484094 - MamSINE1 SINE tRNA -170 120 15 1 1051 272 296 102 45 chr4 61146649 61146826 -94483294 - B2_Mm2 SINE B2 -6 189 3 1 1051 930 262 167 40 chr4 61147420 61147774 -94482346 + MTD LTR MaLR 14 412 -7 1 1051 608 160 8 8 chr4 61147949 61148069 -94482051 - URR1B DNA MER1_type -4 221 102 1 1051 7262 81 15 6 chr4 61148069 61149343 -94480777 - L1Md_F2 LINE L1 -13 6569 5289 1 1051 23 0 0 0 chr4 61149343 61149366 -94480754 + AT_rich Low_complexity Low_complexity 1 23 0 1 1051 3753 54 11 5 chr4 61149366 61149812 -94480308 - L1Md_F3 LINE L1 -4 6580 6132 1 1051 1947 144 22 13 chr4 61149812 61150129 -94479991 + RLTR46 LTR ERVK 1 320 0 1 1051 265 208 50 50 chr4 61150246 61150347 -94479773 + IAPEY3-int LTR ERVK 837 937 -5884 1 1051 598 173 91 0 chr4 61150401 61150511 -94479609 + IAPEY3-int LTR ERVK 940 1059 -6621 1 1051 618 152 192 41 chr4 61151025 61151197 -94478923 + MMERVK10C-int LTR ERVK 435 632 -4774 1 1051 349 123 18 0 chr4 61151277 61151334 -94478786 + MMERVK10C-int LTR ERVK 1089 1146 -4260 1 1051 1389 104 383 11 chr4 61151335 61151708 -94478412 + MMERVK10C-int LTR ERVK 1885 2396 -5185 1 1051 21615 98 37 1 chr4 61151702 61156242 -94473878 + MMERVK10C-int LTR ERVK 2524 7227 -354 1 1051 2110 56 14 29 chr4 61156237 61156512 -94473608 + MMERVK10C-int LTR ERVK 7410 7680 0 1 1051 1890 153 22 13 chr4 61156512 61156829 -94473291 + RLTR46 LTR ERVK 1 320 0 1 1051 1416 42 0 0 chr4 61156829 61156995 -94473125 - L1Md_F3 LINE L1 -447 6137 5972 1 1051 8131 126 5 3 chr4 61156984 61158246 -94471874 - L1Md_F LINE L1 -568 5315 4052 1 1051 7356 119 6 4 chr4 61158251 61159366 -94470754 - L1Md_F LINE L1 -2595 3288 2171 1 1051 3605 145 35 19 chr4 61159368 61160215 -94469905 - RLTR13B4 LTR ERVK -1 892 1 1 1051 6172 132 69 3 chr4 61160215 61162059 -94468061 - L1Md_F LINE L1 -3708 2175 206 1 1051 562 122 0 11 chr4 61162062 61162153 -94467967 + RMER16-int LTR ERVK 2893 2982 -2424 1 1051 761 253 78 5 chr4 61162453 61162644 -94467476 + B3 SINE B2 1 205 -11 1 1051 477 277 13 39 chr4 61162838 61162992 -94467128 - MLT1B LTR MaLR 0 390 241 1 1051 1066 127 0 0 chr4 61163005 61163162 -94466958 + L1_Mus2 LINE L1 6410 6566 0 1 1051 666 210 101 179 chr4 61163163 61163459 -94466661 - MT2A LTR ERVL -260 273 1 1 1051 672 176 59 0 chr4 61163459 61163595 -94466525 - MERVL_2A-int LTR ERVL 0 5761 5618 1 1051 870 164 98 10 chr4 61163599 61163802 -94466318 - MERVL_2A-int LTR ERVL -78 5683 5463 1 1051 1591 186 56 6 chr4 61163996 61164315 -94465805 + L1_Mur2 LINE L1 442 776 -5936 1 1051 3073 215 148 28 chr4 61164288 61165186 -94464934 + MusHAL1 LINE L1 1292 2297 -415 1 1051 2311 127 0 3 chr4 61165182 61165521 -94464599 + L1VL4 LINE L1 214 551 -5751 1 1051 919 164 35 20 chr4 61165521 61165702 -94464418 + RLTR9D LTR ERVK 121 398 -5 1 1051 624 174 16 8 chr4 61165715 61165837 -94464283 + L1VL4 LINE L1 575 697 -5605 1 1051 451 282 10 0 chr4 61165860 61165963 -94464157 - B4 SINE B4 -187 105 2 1 1051 433 342 46 64 chr4 61166239 61166348 -94463772 - MER90a LTR ERV1 -18 596 492 1 1051 1163 275 25 4 chr4 61166348 61166629 -94463491 + B4A SINE B4 2 288 -4 1 1051 433 342 46 64 chr4 61166629 61166645 -94463475 - MER90a LTR ERV1 -123 491 481 1 1051 462 36 0 0 chr4 61166645 61166701 -94463419 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1051 433 342 46 64 chr4 61166701 61166902 -94463218 - MER90a LTR ERV1 -134 480 275 1 1051 320 391 30 6 chr4 61166940 61167107 -94463013 - MER90a LTR ERV1 -439 175 5 1 1051 308 103 0 17 chr4 61167462 61167521 -94462599 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 1 1051 666 198 0 0 chr4 61167820 61167982 -94462138 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 1051 748 286 38 41 chr4 61167982 61168274 -94461846 - B4 SINE B4 0 292 2 1 1051 963 263 58 15 chr4 61168660 61168934 -94461186 + B4A SINE B4 2 287 -5 1 1051 22472 153 24 9 chr4 61168998 61172264 -94457856 - L1_Mus4 LINE L1 -1 6635 3307 1 1051 216 0 0 0 chr4 61172264 61172288 -94457832 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1051 22472 174 13 14 chr4 61172288 61174996 -94455124 - L1_Mus4 LINE L1 -2577 3306 613 1 1051 390 318 84 11 chr4 61175077 61175255 -94454865 - MER90a LTR ERV1 -200 375 185 1 1051 400 321 89 41 chr4 61175266 61175412 -94454708 - MER90a LTR ERV1 -450 164 12 1 1051 198 67 0 0 chr4 61178911 61178917 -94451203 + (CA)n Simple_repeat Simple_repeat 2 7 0 1 1051 291 71 0 0 chr4 61178917 61178959 -94451161 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1 1051 198 67 0 0 chr4 61178959 61178982 -94451138 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1051 187 284 135 0 chr4 61179484 61179558 -94450562 - MIR SINE MIR -106 156 73 1 1051 182 0 50 50 chr4 61180566 61180606 -94449514 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1051 442 226 37 28 chr4 61180951 61181060 -94449060 - B3 SINE B2 0 216 107 1 1051 367 289 114 38 chr4 61181060 61181218 -94448902 + B3 SINE B2 39 208 -8 1 1051 207 406 36 12 chr4 61181463 61181630 -94448490 - MIR SINE MIR -88 174 4 1 1051 426 120 0 0 chr4 61181870 61181945 -94448175 + (TCC)n Simple_repeat Simple_repeat 1 75 0 1 1051 644 321 26 44 chr4 61182009 61182237 -94447883 - B4A SINE B4 -13 279 56 1 1051 347 333 8 17 chr4 61182208 61182327 -94447793 - B1F1 SINE Alu -28 121 4 1 1051 965 214 121 59 chr4 61182881 61183219 -94446901 + RLTR9A LTR ERVK 10 368 0 1 1051 243 0 0 0 chr4 61183533 61183560 -94446560 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1051 507 17 0 0 chr4 61183613 61183673 -94446447 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1051 638 200 28 66 chr4 61183673 61183855 -94446265 + RLTR45-int LTR ERVK 2092 2266 -4978 1 1051 770 125 9 0 chr4 61183872 61183984 -94446136 - B1_Mm SINE Alu -1 146 34 1 1051 4044 171 30 32 chr4 61183984 61184914 -94445206 + RMER16-int LTR ERVK 1259 2186 -5220 1 1051 5668 217 48 27 chr4 61184924 61185003 -94445117 + RMER16-int LTR ERVK 2454 2532 -4874 1 1051 873 132 0 0 chr4 61185003 61185147 -94444973 + (TTTC)n Simple_repeat Simple_repeat 2 145 0 1 1051 10677 177 60 40 chr4 61185147 61187262 -94442858 + RMER16-int LTR ERVK 1566 4093 -3313 1 1051 993 102 0 14 chr4 61187262 61187401 -94442719 + B1_Mm SINE Alu 2 138 -9 1 1051 336 48 0 0 chr4 61187401 61187443 -94442677 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1051 10677 174 61 41 chr4 61187443 61188007 -94442113 + RMER16-int LTR ERVK 3603 4172 -1234 1 1051 27 0 0 0 chr4 61188090 61188117 -94442003 + AT_rich Low_complexity Low_complexity 1 27 0 1 1051 333 265 33 33 chr4 61188277 61188398 -94441722 + ETnERV2-int LTR ERVK 6305 6425 -981 1 1051 935 215 22 97 chr4 61188726 61189004 -94441116 + RLTR9A LTR ERVK 112 368 0 1 1051 764 240 66 5 chr4 61189623 61189820 -94440300 + B3 SINE B2 1 209 -7 1 1051 350 292 24 24 chr4 61190011 61190134 -94439986 - MLT1B LTR MaLR 0 390 268 1 1051 454 260 214 0 chr4 61190343 61190497 -94439623 - MT2A LTR ERVL 0 533 347 1 1051 216 0 0 0 chr4 61190616 61190640 -94439480 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1 1051 453 19 0 0 chr4 61190692 61190746 -94439374 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1051 228 197 0 134 chr4 61190754 61190815 -94439305 + MT2B LTR ERVL 199 257 -344 1 1051 225 0 0 0 chr4 61190815 61190840 -94439280 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 1 1051 228 197 0 134 chr4 61190840 61190860 -94439260 + MT2B LTR ERVL 258 269 -332 1 1051 729 51 0 0 chr4 61191048 61191146 -94438974 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 1051 546 163 0 0 chr4 61191146 61191244 -94438876 + (CAGAGA)n Simple_repeat Simple_repeat 1 98 0 1 1051 283 191 0 31 chr4 61191244 61191309 -94438811 + B1_Mus2 SINE Alu 42 104 -43 1 1051 1915 171 63 99 chr4 61191352 61191936 -94438184 - RLTR45-int LTR ERVK -4612 2632 2070 1 1051 228 130 0 0 chr4 61192006 61192052 -94438068 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 1 1051 865 251 14 84 chr4 61192368 61192655 -94437465 - RLTR9A LTR ERVK 0 368 102 1 1051 242 325 34 17 chr4 61193247 61193366 -94436754 + B1F1 SINE Alu 1 121 -28 1 1051 538 351 38 28 chr4 61193353 61193564 -94436556 + B4A SINE B4 67 279 -13 1 1051 230 209 0 29 chr4 61193640 61193709 -94436411 + GA-rich Low_complexity Low_complexity 2 68 0 1 1051 391 365 36 10 chr4 61193945 61194141 -94435979 + MIRb SINE MIR 8 216 -52 1 1051 446 327 57 0 chr4 61194530 61194689 -94435431 - B3 SINE B2 -10 206 39 1 1051 417 306 19 0 chr4 61194689 61194797 -94435323 + B3 SINE B2 107 216 0 1 1051 405 0 0 0 chr4 61196729 61196774 -94433346 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1051 219 370 25 0 chr4 61199573 61199654 -94430466 - AluG_3 SINE Alu -91 220 138 1 1051 468 305 229 39 chr4 61200262 61200620 -94429500 + MER90a LTR ERV1 12 437 -177 1 1051 17106 184 19 73 chr4 61200722 61206330 -94423790 + L1_Mus4 LINE L1 1347 6633 -3 1 1051 981 274 47 4 chr4 61206412 61206687 -94423433 - B4A SINE B4 -4 288 2 1 1051 589 274 58 129 chr4 61207069 61207356 -94422764 + B4 SINE B4 2 269 -23 1 1051 480 48 0 0 chr4 61207356 61207419 -94422701 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1051 206 167 0 16 chr4 61207731 61207792 -94422328 + (CCCTAA)n Simple_repeat Simple_repeat 4 63 0 1 1051 350 348 38 12 chr4 61208152 61208312 -94421808 + MER90a LTR ERV1 12 175 -439 2 1051 300 368 36 30 chr4 61208342 61208510 -94421610 + MER90a LTR ERV1 269 437 -177 2 1051 837 76 0 0 chr4 61208551 61208669 -94421451 + (TG)n Simple_repeat Simple_repeat 1 118 0 2 1051 933 312 28 14 chr4 61208685 61208968 -94421152 - B4A SINE B4 -4 288 2 2 1051 368 291 9 46 chr4 61209247 61209355 -94420765 + B4 SINE B4 2 105 -187 2 1051 314 169 46 0 chr4 61209380 61209445 -94420675 - L1VL4 LINE L1 -5607 695 628 2 1051 3845 101 6 24 chr4 61209445 61210074 -94420046 + MMETn-int LTR ERVK 2524 3141 -1703 2 131 6006 153 21 1 chr4 61210175 61211138 -94418982 + ETnERV2-int LTR ERVK 6222 7203 -203 2 1052 296 258 370 10 chr4 61211141 61211417 -94418703 + RLTR13D6 LTR ERVK 155 531 -371 2 1052 443 56 26 78 chr4 61211420 61211497 -94418623 + ETnERV2-int LTR ERVK 7327 7399 -7 2 1052 907 198 24 159 chr4 61211503 61211875 -94418245 + RLTRETN_Mm LTR ERVK 1 322 0 2 1052 2357 149 20 0 chr4 61211875 61212272 -94417848 - L1VL4 LINE L1 -5684 618 214 2 1052 3529 165 151 19 chr4 61212267 61213131 -94416989 - L1_Mur2 LINE L1 -2382 3495 2518 2 1052 1563 171 28 9 chr4 61213132 61213456 -94416664 - L1_Mur2 LINE L1 -5941 1145 816 2 1052 806 164 95 9 chr4 61213677 61213887 -94416233 + MERVL_2A-int LTR ERVL 5463 5690 -71 2 1052 623 162 52 0 chr4 61213885 61214021 -94416099 + MERVL_2A-int LTR ERVL 5619 5761 0 2 1052 946 221 211 117 chr4 61214021 61214314 -94415806 + MT2A LTR ERVL 1 253 -280 2 1052 2143 129 6 3 chr4 61214314 61214647 -94415473 - L1_Mus2 LINE L1 0 6566 6233 2 1052 946 221 211 117 chr4 61214647 61214840 -94415280 + MT2A LTR ERVL 254 533 0 2 1052 10551 22 1 0 chr4 61214909 61216201 -94413919 - L1_Mm LINE L1 -547 5336 4044 2 1052 704 215 0 0 chr4 61216538 61216659 -94413461 - B3 SINE B2 -95 121 1 2 1052 919 240 29 0 chr4 61216703 61216907 -94413213 - B3 SINE B2 -6 210 1 2 1052 405 86 0 0 chr4 61217816 61217874 -94412246 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1052 2318 143 13 59 chr4 61218129 61218947 -94411173 - L1VL4 LINE L1 -4386 1497 725 2 1052 414 260 15 8 chr4 61218949 61219081 -94411039 - L1VL4 LINE L1 -5807 809 677 2 1052 538 292 25 107 chr4 61219141 61219598 -94410522 - L1VL1 LINE L1 -6022 400 45 2 1052 910 109 20 0 chr4 61219624 61219771 -94410349 - L1_Mm LINE L1 -942 4941 4792 2 1052 11564 113 37 65 chr4 61219774 61221466 -94408654 + L1Md_F2 LINE L1 3818 5453 -430 2 1052 7351 98 11 3 chr4 61221466 61222442 -94407678 + L1Md_F2 LINE L1 5587 6570 -12 2 1052 6430 86 5 3 chr4 61222442 61223434 -94406686 + L1_Mus1 LINE L1 5450 6443 -124 2 1052 2850 100 29 27 chr4 61223435 61223845 -94406275 + RLTR10A LTR ERVK 1 411 0 2 1052 1599 176 126 27 chr4 61223845 61224376 -94405744 + IAP-d-int LTR ERVK 101 605 -1382 2 1052 2126 53 117 6 chr4 61224376 61224845 -94405275 + IAP-d-int LTR ERVK 5007 5527 -1015 2 1052 2067 71 141 3 chr4 61224849 61225161 -94404959 + IAP-d-int LTR ERVK 5667 6021 -521 2 1052 5169 64 30 16 chr4 61225171 61225866 -94404254 + RLTR10-int LTR ERVK 1282 1986 -1 2 1052 2378 104 123 24 chr4 61225866 61226240 -94403880 + RLTR10A LTR ERVK 1 411 0 2 1052 746 62 142 9 chr4 61226240 61226353 -94403767 + L1_Mus1 LINE L1 6439 6566 -1 2 1052 3333 34 2 40 chr4 61226367 61226770 -94403350 - RLTR10 LTR ERVK -2 388 1 2 1052 1642 47 0 25 chr4 61226774 61226971 -94403149 + B2_Mm1a SINE B2 1 192 -1 2 1052 448 182 0 0 chr4 61227469 61227546 -94402574 + MTA_Mm LTR MaLR 13 89 -330 2 1052 1517 48 5 0 chr4 61227561 61227750 -94402370 + MTA_Mm LTR MaLR 207 396 0 2 1052 350 291 13 0 chr4 61227750 61227829 -94402291 - B3A SINE B2 -118 80 1 2 1052 228 247 83 102 chr4 61227981 61228089 -94402031 - MamSINE1 SINE tRNA -170 120 15 2 1052 250 347 86 33 chr4 61228735 61228887 -94401233 - B3A SINE B2 -36 162 3 2 1052 809 288 84 39 chr4 61229483 61229832 -94400288 + MTD LTR MaLR 14 412 -7 2 1052 608 160 8 8 chr4 61230007 61230127 -94399993 - URR1B DNA MER1_type -4 221 102 2 1052 7222 83 15 5 chr4 61230127 61231401 -94398719 - L1Md_F2 LINE L1 -13 6569 5289 2 1052 23 0 0 0 chr4 61231401 61231424 -94398696 + AT_rich Low_complexity Low_complexity 1 23 0 2 1052 3723 56 11 11 chr4 61231424 61231873 -94398247 - L1Md_F3 LINE L1 -4 6580 6132 2 1052 1947 144 22 13 chr4 61231873 61232190 -94397930 + RLTR46 LTR ERVK 1 320 0 2 1052 291 170 69 69 chr4 61232306 61232407 -94397713 + IAPEY3-int LTR ERVK 837 937 -5884 2 1052 623 164 91 0 chr4 61232460 61232570 -94397550 + IAPEY3-int LTR ERVK 940 1059 -6621 2 1052 593 154 304 19 chr4 61233083 61233273 -94396847 + RMER16-int LTR ERVK 435 633 -4773 2 1052 364 105 18 0 chr4 61233335 61233392 -94396728 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 1052 1334 114 394 11 chr4 61233393 61233763 -94396357 + MMERVK10C-int LTR ERVK 1885 2396 -5185 2 1052 21744 89 35 2 chr4 61233757 61237148 -94392972 + MMERVK10C-int LTR ERVK 2524 6063 -1518 2 1052 4784 150 43 2 chr4 61237148 61238432 -94391688 - L1Md_F LINE L1 -4279 1604 206 2 1052 629 88 0 11 chr4 61238435 61238527 -94391593 + RMER16-int LTR ERVK 2893 2983 -2423 2 1052 792 251 73 5 chr4 61238825 61239017 -94391103 + B3 SINE B2 1 205 -11 2 1052 448 284 13 39 chr4 61239211 61239365 -94390755 - MLT1B LTR MaLR 0 390 241 2 1052 1034 134 0 0 chr4 61239378 61239535 -94390585 + L1_Mus2 LINE L1 6410 6566 0 2 1052 531 215 33 0 chr4 61239563 61239684 -94390436 - MT2A LTR ERVL -309 224 100 2 1052 398 228 43 121 chr4 61239690 61239830 -94390290 - MT2A LTR ERVL -404 129 1 2 1052 683 169 59 0 chr4 61239830 61239966 -94390154 - MERVL_2A-int LTR ERVL 0 5761 5618 2 1052 859 160 104 10 chr4 61239970 61240172 -94389948 - MERVL_2A-int LTR ERVL -78 5683 5463 2 1052 228 283 39 23 chr4 61240228 61240358 -94389762 + L1_Mur2 LINE L1 579 710 -6376 2 1052 1508 196 56 6 chr4 61240365 61240684 -94389436 + L1_Mur2 LINE L1 816 1150 -5936 2 1052 3953 165 147 28 chr4 61240671 61241557 -94388563 + L1_Mur2 LINE L1 2501 3491 -2386 2 1052 2396 129 0 3 chr4 61241550 61241907 -94388213 + L1VL4 LINE L1 214 569 -5733 2 1052 883 155 19 25 chr4 61241912 61242071 -94388049 + RLTR9D LTR ERVK 241 398 -5 2 1052 477 156 127 9 chr4 61242084 61242194 -94387926 + L1VL4 LINE L1 575 697 -5605 2 1052 451 282 10 0 chr4 61242217 61242320 -94387800 - B4 SINE B4 -187 105 2 2 1052 401 345 46 64 chr4 61242595 61242704 -94387416 - MER90a LTR ERV1 -18 596 492 2 1052 1157 265 29 7 chr4 61242704 61242985 -94387135 + B4A SINE B4 2 288 -4 2 1052 401 345 46 64 chr4 61242985 61243001 -94387119 - MER90a LTR ERV1 -123 491 481 2 1052 480 35 0 0 chr4 61243001 61243059 -94387061 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1052 401 345 46 64 chr4 61243059 61243260 -94386860 - MER90a LTR ERV1 -134 480 275 2 1052 309 388 36 12 chr4 61243298 61243465 -94386655 - MER90a LTR ERV1 -439 175 5 2 1052 314 115 0 16 chr4 61243817 61243879 -94386241 + (TTAGGG)n Simple_repeat Simple_repeat 3 63 0 2 1052 715 311 36 70 chr4 61244234 61244265 -94385855 - B4 SINE B4 0 292 270 2 1052 444 37 0 0 chr4 61244265 61244319 -94385801 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1052 715 311 36 70 chr4 61244319 61244588 -94385532 - B4 SINE B4 -23 269 2 2 1052 1074 277 46 18 chr4 61244974 61245257 -94384863 + B4A SINE B4 2 292 0 2 1052 24565 150 25 12 chr4 61245312 61248576 -94381544 - L1_Mus4 LINE L1 -1 6635 3307 2 1052 261 0 0 0 chr4 61248576 61248605 -94381515 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1052 24565 172 14 19 chr4 61248605 61251334 -94378786 - L1_Mus4 LINE L1 -2577 3306 613 2 1052 401 311 244 29 chr4 61251415 61251750 -94378370 - MER90a LTR ERV1 -200 375 12 2 1052 212 382 22 0 chr4 61252351 61252440 -94377680 + FAM SINE Alu 137 227 -84 2 1052 228 67 0 0 chr4 61255254 61255284 -94374836 + (CAA)n Simple_repeat Simple_repeat 3 32 0 2 1052 276 53 0 0 chr4 61255284 61255322 -94374798 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1052 201 154 0 0 chr4 61256907 61256946 -94373174 + T-rich Low_complexity Low_complexity 3 41 0 2 1052 440 226 37 28 chr4 61257290 61257399 -94372721 - B3 SINE B2 0 216 107 2 1052 329 296 114 38 chr4 61257399 61257557 -94372563 + B3 SINE B2 39 208 -8 2 1052 199 380 48 24 chr4 61257802 61257969 -94372151 - MIR SINE MIR -88 174 4 2 1052 255 157 0 0 chr4 61258209 61258260 -94371860 + CT-rich Low_complexity Low_complexity 1 51 0 2 1052 587 302 40 53 chr4 61258324 61258551 -94371569 - B4A SINE B4 -13 279 56 2 1052 308 358 8 16 chr4 61258522 61258644 -94371476 - B1F1 SINE Alu -28 121 1 2 1052 967 210 118 59 chr4 61259195 61259534 -94370586 + RLTR9A LTR ERVK 10 368 0 2 1052 22 35 0 0 chr4 61259841 61259870 -94370250 + AT_rich Low_complexity Low_complexity 1 29 0 2 1052 468 0 0 0 chr4 61259928 61259980 -94370140 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1052 714 202 63 63 chr4 61259980 61260190 -94369930 + RLTR45-int LTR ERVK 2092 2266 -4978 2 1052 814 98 9 0 chr4 61260192 61260304 -94369816 - B1_Mm SINE Alu -1 146 34 2 1052 4406 175 40 26 chr4 61260304 61261224 -94368896 + ETnERV2-int LTR ERVK 1259 2191 -5215 2 1052 1338 250 4 111 chr4 61261324 61261878 -94368242 + ETnERV2-int LTR ERVK 2189 2540 -4866 2 1052 621 100 0 0 chr4 61261882 61261972 -94368148 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1052 5594 206 34 27 chr4 61261972 61263324 -94366796 + ETnERV2-int LTR ERVK 2180 3879 -3527 2 1052 846 235 66 5 chr4 61263539 61263736 -94366384 + B3 SINE B2 1 209 -7 2 1052 356 292 24 24 chr4 61263927 61264050 -94366070 - MLT1B LTR MaLR 0 390 268 2 1052 401 266 128 7 chr4 61264259 61264422 -94365698 - MT2A LTR ERVL 0 584 347 2 1052 471 18 0 0 chr4 61264607 61264663 -94365457 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1052 245 197 0 134 chr4 61264665 61264726 -94365394 + MT2B LTR ERVL 199 257 -344 2 1052 405 0 0 0 chr4 61264726 61264771 -94365349 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 2 1052 245 197 0 134 chr4 61264771 61264791 -94365329 + MT2B LTR ERVL 258 269 -332 2 1052 267 93 0 0 chr4 61264833 61264876 -94365244 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 2 1052 468 48 0 0 chr4 61265003 61265066 -94365054 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1052 585 184 0 0 chr4 61265066 61265180 -94364940 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 2 1052 286 191 0 31 chr4 61265249 61265314 -94364806 + B1_Mus2 SINE Alu 42 104 -43 2 1052 2095 151 64 131 chr4 61265357 61265937 -94364183 - RLTR45-int LTR ERVK -4612 2632 2092 2 1052 531 43 0 0 chr4 61265937 61266007 -94364113 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1052 228 130 0 0 chr4 61266052 61266098 -94364022 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 2 1052 817 263 11 85 chr4 61266418 61266701 -94363419 - RLTR9A LTR ERVK -5 363 102 2 1052 260 370 17 8 chr4 61267293 61267413 -94362707 + B1F1 SINE Alu 1 121 -28 2 1052 542 320 47 38 chr4 61267400 61267611 -94362509 + B4A SINE B4 67 279 -13 2 1052 230 209 0 29 chr4 61267685 61267754 -94362366 + GA-rich Low_complexity Low_complexity 2 68 0 2 1052 443 322 32 43 chr4 61267983 61268168 -94361952 + MIR SINE MIR 9 191 -71 2 1052 434 327 57 0 chr4 61268574 61268733 -94361387 - B3 SINE B2 -10 206 39 2 1052 441 287 19 0 chr4 61268733 61268841 -94361279 + B3 SINE B2 107 216 0 2 1052 201 39 0 0 chr4 61269309 61269335 -94360785 + (CTG)n Simple_repeat Simple_repeat 1 26 0 2 1052 216 370 25 0 chr4 61273583 61273664 -94356456 - AluG_3 SINE Alu -91 220 138 2 1052 455 300 232 42 chr4 61274272 61274630 -94355490 + MER90a LTR ERV1 12 437 -177 2 1052 14055 177 24 51 chr4 61274732 61280337 -94349783 + L1_Mus4 LINE L1 1347 6633 -3 2 1052 1059 281 47 4 chr4 61280419 61280694 -94349426 - B4A SINE B4 -4 288 2 3 1052 554 281 58 129 chr4 61281076 61281363 -94348757 + B4 SINE B4 2 269 -23 3 1052 390 57 0 0 chr4 61281363 61281416 -94348704 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1052 206 167 0 16 chr4 61281728 61281789 -94348331 + (CCCTAA)n Simple_repeat Simple_repeat 4 63 0 3 1052 345 344 44 19 chr4 61282149 61282309 -94347811 + MER90a LTR ERV1 12 175 -439 3 1052 291 368 36 30 chr4 61282339 61282507 -94347613 + MER90a LTR ERV1 269 437 -177 3 1052 981 67 0 0 chr4 61282548 61282682 -94347438 + (TG)n Simple_repeat Simple_repeat 1 134 0 3 1052 935 308 28 14 chr4 61282698 61282981 -94347139 - B4A SINE B4 -4 288 2 3 1052 358 301 9 46 chr4 61283260 61283368 -94346752 + B4 SINE B4 2 105 -187 3 1052 372 197 0 0 chr4 61283390 61283461 -94346659 - L1VL4 LINE L1 -5604 698 628 3 1052 4207 99 6 24 chr4 61283461 61284090 -94346030 + MMETn-int LTR ERVK 2524 3141 -1703 3 1052 6451 153 21 1 chr4 61284191 61285154 -94344966 + ETnERV2-int LTR ERVK 6222 7203 -203 3 1052 289 258 370 10 chr4 61285157 61285433 -94344687 + RLTR13D6 LTR ERVK 155 531 -371 3 1052 499 100 23 70 chr4 61285433 61285519 -94344601 + ETnERV2-int LTR ERVK 7324 7405 -1 3 1052 1019 211 25 149 chr4 61285519 61285887 -94344233 + RLTRETN_Mm LTR ERVK 1 322 0 3 1052 2514 149 20 0 chr4 61285887 61286284 -94343836 - L1VL4 LINE L1 -5684 618 214 3 1052 3994 158 152 19 chr4 61286279 61287142 -94342978 - L1_Mur2 LINE L1 -2382 3495 2518 3 1052 1679 174 28 9 chr4 61287143 61287467 -94342653 - L1_Mur2 LINE L1 -5941 1145 816 3 1052 233 266 94 38 chr4 61287462 61287622 -94342498 - L1_Mur2 LINE L1 -6493 593 425 3 1052 909 164 95 9 chr4 61287688 61287898 -94342222 + MERVL_2A-int LTR ERVL 5463 5690 -71 3 1052 685 162 52 0 chr4 61287896 61288032 -94342088 + MERVL_2A-int LTR ERVL 5619 5761 0 3 1052 937 221 211 117 chr4 61288032 61288325 -94341795 + MT2A LTR ERVL 1 253 -280 3 1052 2245 136 6 3 chr4 61288325 61288658 -94341462 - L1_Mus2 LINE L1 0 6566 6233 3 1052 937 221 211 117 chr4 61288658 61288851 -94341269 + MT2A LTR ERVL 254 533 0 3 1052 640 240 0 0 chr4 61289246 61289367 -94340753 - B3 SINE B2 -95 121 1 3 1052 1001 248 29 0 chr4 61289405 61289615 -94340505 - B3 SINE B2 0 216 1 3 1052 405 86 0 0 chr4 61290524 61290582 -94339538 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1052 2458 197 33 69 chr4 61290836 61292307 -94337813 - L1Md_F LINE L1 -4384 1499 261 3 1052 942 112 21 0 chr4 61292333 61292476 -94337644 - L1_Mm LINE L1 -942 4941 4796 3 1052 421 310 100 29 chr4 61292483 61292862 -94337258 - Arthur1 DNA Tip100 -95 3852 3447 3 1052 399 141 11 68 chr4 61293271 61293461 -94336659 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1052 439 138 28 28 chr4 61293564 61293706 -94336414 + (TG)n Simple_repeat Simple_repeat 1 142 0 3 1052 28 29 0 0 chr4 61293828 61293863 -94336257 + AT_rich Low_complexity Low_complexity 1 35 0 3 1052 1556 89 0 0 chr4 61294074 61294277 -94335843 + L1Md_F2 LINE L1 5384 5586 -297 3 1052 7217 94 19 13 chr4 61294278 61295255 -94334865 + L1Md_F2 LINE L1 5588 6570 -12 3 1052 6472 83 6 3 chr4 61295255 61296246 -94333874 + L1_Mus1 LINE L1 5450 6443 -124 3 1052 2809 105 29 27 chr4 61296247 61296657 -94333463 + RLTR10A LTR ERVK 1 411 0 3 1052 1599 197 97 39 chr4 61296657 61297288 -94332832 + IAP-d-int LTR ERVK 57 606 -1381 3 1052 2111 55 117 6 chr4 61297288 61297757 -94332363 + IAP-d-int LTR ERVK 5007 5527 -1015 3 1052 2072 74 141 3 chr4 61297761 61298073 -94332047 + IAP-d-int LTR ERVK 5667 6021 -521 3 1052 5171 74 19 14 chr4 61298083 61298782 -94331338 + RLTR10-int LTR ERVK 1282 1983 -4 3 1052 2390 96 122 34 chr4 61298786 61299164 -94330956 + RLTR10A LTR ERVK 1 411 0 3 1052 779 62 143 0 chr4 61299164 61299276 -94330844 + L1_Mus1 LINE L1 6439 6566 -1 3 1052 1616 48 0 26 chr4 61299286 61299478 -94330642 + B2_Mm1a SINE B2 1 187 -6 3 1052 239 276 53 0 chr4 61299537 61299613 -94330507 + MADE2 DNA Mariner 1 80 0 3 1052 448 182 0 0 chr4 61299979 61300056 -94330064 + MTA_Mm LTR MaLR 13 89 -330 3 1052 1486 58 5 0 chr4 61300071 61300260 -94329860 + MTA_Mm LTR MaLR 207 396 0 3 1052 350 291 13 0 chr4 61300260 61300339 -94329781 - B3A SINE B2 -118 80 1 3 1052 228 247 83 102 chr4 61300491 61300599 -94329521 - MamSINE1 SINE tRNA -170 120 15 3 1052 272 296 102 45 chr4 61301222 61301399 -94328721 - B2_Mm2 SINE B2 -6 189 3 3 1052 930 262 167 40 chr4 61301993 61302347 -94327773 + MTD LTR MaLR 14 412 -7 3 1052 608 160 8 8 chr4 61302522 61302642 -94327478 - URR1B DNA MER1_type -4 221 102 3 1052 7262 81 15 6 chr4 61302642 61303916 -94326204 - L1Md_F2 LINE L1 -13 6569 5289 3 1052 23 0 0 0 chr4 61303916 61303939 -94326181 + AT_rich Low_complexity Low_complexity 1 23 0 3 1052 3723 56 11 11 chr4 61303939 61304388 -94325732 - L1Md_F3 LINE L1 -4 6580 6132 3 1052 1947 144 22 13 chr4 61304388 61304705 -94325415 + RLTR46 LTR ERVK 1 320 0 3 1052 265 208 50 50 chr4 61304822 61304923 -94325197 + IAPEY3-int LTR ERVK 837 937 -5884 3 1052 598 173 91 0 chr4 61304977 61305087 -94325033 + IAPEY3-int LTR ERVK 940 1059 -6621 3 1052 618 152 192 41 chr4 61305601 61305773 -94324347 + MMERVK10C-int LTR ERVK 435 632 -4774 3 1052 349 123 18 0 chr4 61305853 61305910 -94324210 + MMERVK10C-int LTR ERVK 1089 1146 -4260 3 1052 1389 104 383 11 chr4 61305911 61306284 -94323836 + MMERVK10C-int LTR ERVK 1885 2396 -5185 3 1052 21628 98 37 1 chr4 61306278 61310818 -94319302 + MMERVK10C-int LTR ERVK 2524 7227 -354 3 1052 2110 56 14 29 chr4 61310813 61311088 -94319032 + MMERVK10C-int LTR ERVK 7410 7680 0 3 1052 1890 153 22 13 chr4 61311088 61311405 -94318715 + RLTR46 LTR ERVK 1 320 0 3 1052 1416 42 0 0 chr4 61311405 61311571 -94318549 - L1Md_F3 LINE L1 -447 6137 5972 3 1052 8131 126 5 3 chr4 61311560 61312822 -94317298 - L1Md_F LINE L1 -568 5315 4052 3 1052 7361 118 6 4 chr4 61312827 61313942 -94316178 - L1Md_F LINE L1 -2595 3288 2171 3 1052 3603 146 34 19 chr4 61313944 61314791 -94315329 - RLTR13B4 LTR ERVK -1 892 1 3 1052 6192 132 69 3 chr4 61314791 61316635 -94313485 - L1Md_F LINE L1 -3708 2175 206 3 1052 579 111 0 11 chr4 61316638 61316729 -94313391 + RMER16-int LTR ERVK 2893 2982 -2424 3 1052 761 253 78 5 chr4 61317029 61317220 -94312900 + B3 SINE B2 1 205 -11 3 1052 477 277 13 39 chr4 61317414 61317568 -94312552 - MLT1B LTR MaLR 0 390 241 3 1052 1066 127 0 0 chr4 61317581 61317738 -94312382 + L1_Mus2 LINE L1 6410 6566 0 3 1052 666 210 101 179 chr4 61317739 61318035 -94312085 - MT2A LTR ERVL -260 273 1 3 1052 672 176 59 0 chr4 61318035 61318171 -94311949 - MERVL_2A-int LTR ERVL 0 5761 5618 3 1052 870 164 98 10 chr4 61318175 61318378 -94311742 - MERVL_2A-int LTR ERVL -78 5683 5463 3 1052 1569 189 56 6 chr4 61318572 61318891 -94311229 + L1_Mur2 LINE L1 442 776 -5936 3 1052 3086 214 148 28 chr4 61318864 61319762 -94310358 + MusHAL1 LINE L1 1292 2297 -415 3 1052 2311 127 0 3 chr4 61319758 61320097 -94310023 + L1VL4 LINE L1 214 551 -5751 3 1052 919 164 35 20 chr4 61320097 61320278 -94309842 + RLTR9D LTR ERVK 121 398 -5 3 1052 624 174 16 8 chr4 61320291 61320413 -94309707 + L1VL4 LINE L1 575 697 -5605 3 1052 451 282 10 0 chr4 61320436 61320539 -94309581 - B4 SINE B4 -187 105 2 3 1052 433 342 46 64 chr4 61320815 61320924 -94309196 - MER90a LTR ERV1 -18 596 492 3 1052 1136 279 25 4 chr4 61320924 61321205 -94308915 + B4A SINE B4 2 288 -4 3 1052 433 342 46 64 chr4 61321205 61321221 -94308899 - MER90a LTR ERV1 -123 491 481 3 1052 465 19 0 0 chr4 61321221 61321275 -94308845 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1052 433 342 46 64 chr4 61321275 61321476 -94308644 - MER90a LTR ERV1 -134 480 275 3 1052 245 155 0 17 chr4 61322036 61322095 -94308025 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 3 1052 666 198 0 0 chr4 61322394 61322556 -94307564 + (TG)n Simple_repeat Simple_repeat 1 162 0 3 1052 849 286 38 41 chr4 61322556 61322848 -94307272 - B4 SINE B4 0 292 2 3 1052 1061 268 53 25 chr4 61323234 61323517 -94306603 + B4A SINE B4 2 292 0 3 1052 24635 152 24 9 chr4 61323572 61326839 -94303281 - L1_Mus4 LINE L1 -1 6635 3307 3 1052 306 0 0 0 chr4 61326839 61326873 -94303247 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1052 24635 173 13 15 chr4 61326873 61329585 -94300535 - L1_Mus4 LINE L1 -2577 3306 613 3 1052 396 312 84 11 chr4 61329666 61329844 -94300276 - MER90a LTR ERV1 -200 375 185 3 1052 401 321 89 41 chr4 61329855 61330001 -94300119 - MER90a LTR ERV1 -450 164 12 3 1052 248 378 11 0 chr4 61330601 61330691 -94299429 + FAM SINE Alu 137 227 -84 3 1052 198 67 0 0 chr4 61333502 61333508 -94296612 + (CA)n Simple_repeat Simple_repeat 2 7 0 3 1052 411 56 0 0 chr4 61333508 61333562 -94296558 + (CAA)n Simple_repeat Simple_repeat 3 56 0 3 1052 198 67 0 0 chr4 61333562 61333585 -94296535 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1052 231 61 0 0 chr4 61335172 61335205 -94294915 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1052 430 217 37 28 chr4 61335550 61335659 -94294461 - B3 SINE B2 0 216 107 3 1052 331 283 114 38 chr4 61335659 61335817 -94294303 + B3 SINE B2 39 208 -8 3 1052 223 382 36 12 chr4 61336236 61336403 -94293717 - MIR SINE MIR -88 174 4 3 1052 665 79 10 0 chr4 61336643 61336744 -94293376 + (TCC)n Simple_repeat Simple_repeat 1 102 0 3 1052 564 321 26 44 chr4 61336808 61337036 -94293084 - B4A SINE B4 -13 279 56 3 1052 310 333 8 17 chr4 61337007 61337126 -94292994 - B1F1 SINE Alu -28 121 4 3 1052 850 90 0 0 chr4 61337896 61338018 -94292102 + RLTR9A LTR ERVK 247 368 0 3 1052 243 0 0 0 chr4 61338332 61338359 -94291761 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1052 705 12 0 0 chr4 61338412 61338494 -94291626 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 1052 682 206 28 66 chr4 61338494 61338676 -94291444 + RLTR45-int LTR ERVK 2092 2266 -4978 3 1052 747 116 9 0 chr4 61338693 61338805 -94291315 - B1_Mm SINE Alu -1 146 34 3 1052 4343 169 29 32 chr4 61338805 61339698 -94290422 + ETnERV2-int LTR ERVK 1259 2148 -5258 3 1052 21 36 0 0 chr4 61339698 61339726 -94290394 + AT_rich Low_complexity Low_complexity 1 28 0 3 131 41998 20 1 5 chr4 61339726 61349618 -94280502 - L1Md_A LINE L1 0 6582 1 3 1053 256 176 20 0 chr4 61349626 61349677 -94280443 + ETnERV2-int LTR ERVK 2140 2191 -5215 3 1053 7029 241 31 68 chr4 61349777 61350358 -94279762 + RMER16-int LTR ERVK 1415 2539 -4867 3 1053 1215 102 0 0 chr4 61350358 61350535 -94279585 + (TC)n Simple_repeat Simple_repeat 2 178 0 3 1053 8753 177 67 36 chr4 61350535 61351918 -94278202 + RMER16-int LTR ERVK 1566 3932 -3474 3 1053 189 0 0 0 chr4 61351918 61351939 -94278181 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1053 8753 173 70 31 chr4 61351939 61352608 -94277512 + RMER16-int LTR ERVK 2862 3541 -1865 3 1053 23 0 0 0 chr4 61352709 61352732 -94277388 + AT_rich Low_complexity Low_complexity 1 23 0 3 1053 373 274 33 33 chr4 61352892 61353013 -94277107 + ETnERV2-int LTR ERVK 6305 6425 -981 3 1053 791 223 22 97 chr4 61353340 61353618 -94276502 + RLTR9A LTR ERVK 112 368 0 3 1053 750 245 66 5 chr4 61354236 61354433 -94275687 + B3 SINE B2 1 209 -7 3 1053 314 292 24 24 chr4 61354624 61354747 -94275373 - MLT1B LTR MaLR 0 390 268 3 1053 432 253 214 0 chr4 61354956 61355110 -94275010 - MT2A LTR ERVL 0 533 347 3 1053 195 42 0 0 chr4 61355147 61355171 -94274949 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 1053 219 36 0 0 chr4 61355229 61355257 -94274863 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 3 1053 474 33 0 0 chr4 61355307 61355367 -94274753 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1053 249 197 0 0 chr4 61355369 61355430 -94274690 + B1_Mus2 SINE Alu 42 102 -45 3 1053 456 19 0 0 chr4 61355430 61355483 -94274637 + (CAGA)n Simple_repeat Simple_repeat 3 55 0 3 1053 222 105 0 0 chr4 61355699 61355737 -94274383 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1053 612 164 0 0 chr4 61355737 61355847 -94274273 + (CAGAGA)n Simple_repeat Simple_repeat 1 110 0 4 1053 278 164 0 0 chr4 61355847 61355902 -94274218 + B1_Mus2 SINE Alu 42 96 -51 4 1053 2103 169 63 108 chr4 61355955 61356545 -94273575 - RLTR45-int LTR ERVK -4612 2632 2070 4 1053 249 57 0 0 chr4 61356545 61356580 -94273540 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1053 221 57 29 0 chr4 61356625 61356660 -94273460 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 4 1053 724 263 11 85 chr4 61356980 61357263 -94272857 - RLTR9A LTR ERVK -5 363 102 4 1053 247 316 34 17 chr4 61357855 61357974 -94272146 + B1F SINE Alu 1 121 -28 4 1053 458 351 38 28 chr4 61357961 61358172 -94271948 + B4A SINE B4 67 279 -13 4 1053 246 156 0 0 chr4 61358274 61358319 -94271801 + GA-rich Low_complexity Low_complexity 3 47 0 4 1053 395 322 32 43 chr4 61358552 61358737 -94271383 + MIR SINE MIR 9 191 -71 4 1053 389 321 57 0 chr4 61359143 61359302 -94270818 - B3 SINE B2 -10 206 39 4 1053 395 296 19 0 chr4 61359302 61359410 -94270710 + B3 SINE B2 107 216 0 4 1053 180 0 0 0 chr4 61361327 61361347 -94268773 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1053 341 311 113 9 chr4 61364855 61365035 -94265085 + MER90a LTR ERV1 12 168 -446 4 1053 242 333 56 35 chr4 61365046 61365189 -94264931 + MER90a LTR ERV1 229 374 -201 4 1053 23033 163 22 11 chr4 61365323 61370540 -94259580 + L1_Mus4 LINE L1 1354 6633 -3 4 1053 957 277 47 4 chr4 61370624 61370899 -94259221 - B4A SINE B4 -4 288 2 4 1053 683 265 25 110 chr4 61371282 61371600 -94258520 + B4 SINE B4 2 292 0 4 1053 273 186 0 0 chr4 61371600 61371670 -94258450 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1053 272 133 0 16 chr4 61371982 61372043 -94258077 + (CCCTAA)n Simple_repeat Simple_repeat 3 62 0 4 1053 279 340 69 44 chr4 61372404 61372564 -94257556 + MER90a LTR ERV1 12 175 -439 4 1053 324 302 102 24 chr4 61372594 61372760 -94257360 + MER90a LTR ERV1 269 447 -167 4 1053 822 308 36 4 chr4 61372852 61373129 -94256991 - B4A SINE B4 -5 287 2 4 1053 373 281 9 46 chr4 61373408 61373516 -94256604 + B4 SINE B4 2 105 -187 4 1053 373 191 0 0 chr4 61373541 61373609 -94256511 - L1VL4 LINE L1 -5607 695 628 4 1053 382 97 0 0 chr4 61373639 61373701 -94256419 - B2_Mm2 SINE B2 -93 102 41 4 1053 2083 73 0 43 chr4 61373701 61374000 -94256120 + MMETn-int LTR ERVK 2856 3141 -1703 4 1053 6664 154 18 36 chr4 61373969 61375065 -94255055 + ETnERV2-int LTR ERVK 6127 7203 -203 4 1053 263 232 379 11 chr4 61375068 61375344 -94254776 + RLTR13B1 LTR ERVK 155 531 -371 4 1053 492 100 23 70 chr4 61375344 61375430 -94254690 + ETnERV2-int LTR ERVK 7324 7405 -1 4 1053 1066 195 25 140 chr4 61375430 61375794 -94254326 + RLTRETN_Mm LTR ERVK 1 322 0 4 1053 2780 132 5 0 chr4 61375794 61376197 -94253923 - L1VL4 LINE L1 -5684 618 214 4 1053 4022 146 154 24 chr4 61376190 61377053 -94253067 - L1_Mur2 LINE L1 -2386 3491 2517 4 1053 1667 184 27 15 chr4 61377052 61377384 -94252736 - L1_Mur2 LINE L1 -5940 1146 811 4 1053 775 192 95 9 chr4 61377597 61377807 -94252313 + MERVL_2A-int LTR ERVL 5463 5690 -71 4 1053 687 162 52 0 chr4 61377805 61377941 -94252179 + MERVL_2A-int LTR ERVL 5619 5761 0 4 1053 811 213 189 134 chr4 61377941 61378235 -94251885 + MT2A LTR ERVL 1 253 -280 4 1053 2231 123 3 3 chr4 61378235 61378569 -94251551 - L1_Mus2 LINE L1 0 6566 6233 4 1053 811 227 164 125 chr4 61378569 61378762 -94251358 + MT2A LTR ERVL 254 601 0 4 1053 679 207 0 0 chr4 61379156 61379277 -94250843 - B3 SINE B2 -95 121 1 4 1053 1014 246 5 0 chr4 61379315 61379526 -94250594 - B3 SINE B2 0 216 5 4 1053 186 143 0 0 chr4 61380429 61380464 -94249656 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1053 619 229 299 19 chr4 61380551 61380681 -94249439 + MT2A LTR ERVL 119 253 -280 4 1053 2104 136 6 3 chr4 61380681 61381014 -94249106 - L1_Mus2 LINE L1 0 6566 6233 4 1053 619 229 299 19 chr4 61381014 61381207 -94248913 + MT2A LTR ERVL 254 533 0 4 1053 594 240 0 0 chr4 61381602 61381723 -94248397 - B3 SINE B2 -95 121 1 4 1053 921 243 29 0 chr4 61381761 61381967 -94248153 - B3 SINE B2 0 216 5 4 1053 258 32 0 0 chr4 61382880 61382911 -94247209 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1053 653 270 43 85 chr4 61382914 61383303 -94246817 - L1VL1 LINE L1 -6014 408 92 4 1053 939 112 21 0 chr4 61383329 61383472 -94246648 - L1_Mm LINE L1 -942 4941 4796 4 1053 345 320 98 26 chr4 61383479 61383858 -94246262 - Arthur1 DNA Tip100 -95 3852 3447 4 1053 399 141 11 68 chr4 61384267 61384457 -94245663 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1053 439 138 28 28 chr4 61384560 61384702 -94245418 + (TG)n Simple_repeat Simple_repeat 1 142 0 4 1053 28 29 0 0 chr4 61384824 61384859 -94245261 + AT_rich Low_complexity Low_complexity 1 35 0 4 1053 1639 64 0 0 chr4 61385072 61385274 -94244846 + L1Md_F2 LINE L1 5384 5585 -298 4 1053 7018 88 21 5 chr4 61385275 61386245 -94243875 + L1Md_F2 LINE L1 5587 6571 -11 4 1053 5756 138 30 6 chr4 61386245 61387337 -94242783 + L1Md_F2 LINE L1 5453 6582 0 4 1053 1941 127 3 9 chr4 61387541 61387859 -94242261 - IAPLTR2b LTR ERVK -11 316 1 4 1053 4598 87 33 26 chr4 61387859 61388523 -94241597 - IAPEz-int LTR ERVK 0 6481 5813 4 1053 28772 105 32 19 chr4 61388591 61393329 -94236791 - IAPEz-int LTR ERVK -2202 5478 497 4 1053 39640 45 1 17 chr4 61393380 61399201 -94230919 - L1Md_F2 LINE L1 -460 6122 399 4 1053 381 221 0 0 chr4 61399213 61399290 -94230830 + MTA_Mm LTR MaLR 13 89 -332 4 1053 1432 61 0 25 chr4 61399293 61399496 -94230624 + MTA_Mm LTR MaLR 199 396 0 4 1053 377 215 13 0 chr4 61399496 61399575 -94230545 - B3A SINE B2 -118 80 1 4 1053 186 43 0 0 chr4 61401698 61401721 -94228399 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1053 423 0 0 0 chr4 61401845 61401892 -94228228 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1053 226 320 0 74 chr4 61401923 61402031 -94228089 - B3A SINE B2 -96 102 3 4 1053 892 270 144 32 chr4 61402632 61402980 -94227140 + MTD LTR MaLR 14 400 -19 4 1053 575 160 8 8 chr4 61403161 61403281 -94226839 - URR1B DNA MER1_type -4 221 102 4 1053 7098 79 15 3 chr4 61403281 61404552 -94225568 - L1Md_F2 LINE L1 -13 6569 5289 4 1053 23 0 0 0 chr4 61404552 61404575 -94225545 + AT_rich Low_complexity Low_complexity 1 23 0 4 1053 3593 50 9 24 chr4 61404578 61405033 -94225087 - L1Md_F3 LINE L1 -5 6579 6132 4 1053 1848 143 19 22 chr4 61405033 61405354 -94224766 + RLTR46 LTR ERVK 1 320 0 4 1053 256 219 55 0 chr4 61405477 61405550 -94224570 + IAPEY3-int LTR ERVK 840 916 -5905 4 1053 654 136 91 0 chr4 61405628 61405738 -94224382 + IAPEY3-int LTR ERVK 940 1059 -6621 4 1053 588 148 222 51 chr4 61406252 61406451 -94223669 + RMER16-int LTR ERVK 435 637 -4769 4 1053 348 123 18 0 chr4 61406504 61406561 -94223559 + MMERVK10C-int LTR ERVK 1089 1146 -4260 4 1053 1399 104 383 11 chr4 61406562 61406935 -94223185 + MMERVK10C-int LTR ERVK 1885 2396 -5185 4 1053 21628 99 42 3 chr4 61406929 61411717 -94218403 + MMERVK10C-int LTR ERVK 2524 7513 0 4 1053 1602 176 22 13 chr4 61411717 61412034 -94218086 + RLTR46 LTR ERVK 1 320 0 4 1053 1434 36 0 0 chr4 61412034 61412200 -94217920 - L1Md_F3 LINE L1 -447 6137 5972 4 1053 13374 160 127 7 chr4 61412209 61414578 -94215542 - L1Md_F LINE L1 -591 5286 2170 4 1053 4502 149 11 64 chr4 61414578 61415425 -94214695 - RLTR13B4 LTR ERVK -1 802 1 4 1053 13374 132 67 7 chr4 61415425 61417269 -94212851 - L1Md_F LINE L1 -3708 2175 206 4 1053 553 122 0 11 chr4 61417272 61417363 -94212757 + RMER16-int LTR ERVK 2893 2982 -2424 4 1053 734 241 73 5 chr4 61417663 61417855 -94212265 + B3 SINE B2 1 205 -11 4 1053 441 260 26 52 chr4 61418049 61418203 -94211917 - MLT1B LTR MaLR 0 390 241 4 1053 947 140 0 0 chr4 61418216 61418373 -94211747 + L1_Mus2 LINE L1 6410 6566 0 4 1053 587 200 38 201 chr4 61418406 61418669 -94211451 - MT2A LTR ERVL -313 220 1 4 1053 691 177 57 0 chr4 61418669 61418810 -94211310 - MERVL_2A-int LTR ERVL 0 5761 5613 4 1053 818 169 98 10 chr4 61418809 61419012 -94211108 - MERVL_2A-int LTR ERVL -78 5683 5463 4 1053 254 281 30 23 chr4 61419068 61419199 -94210921 + L1_Mur2 LINE L1 579 710 -6376 4 1053 1631 177 56 6 chr4 61419206 61419525 -94210595 + L1_Mur2 LINE L1 816 1150 -5936 4 1053 3896 162 151 28 chr4 61419512 61420395 -94209725 + L1_Mur2 LINE L1 2501 3491 -2386 4 1053 2458 121 0 3 chr4 61420388 61420745 -94209375 + L1VL4 LINE L1 214 569 -5733 4 1053 843 155 19 19 chr4 61420750 61420908 -94209212 + RLTR9D LTR ERVK 241 398 -5 4 1053 642 165 16 8 chr4 61420921 61421043 -94209077 + L1VL4 LINE L1 575 697 -5605 4 1053 414 282 10 0 chr4 61421066 61421169 -94208951 - B4 SINE B4 -187 105 2 4 1053 343 343 45 69 chr4 61421445 61421554 -94208566 - MER90a LTR ERV1 -18 596 492 4 1053 1026 280 29 4 chr4 61421554 61421834 -94208286 + B4A SINE B4 2 288 -4 4 1053 343 343 45 69 chr4 61421834 61421850 -94208270 - MER90a LTR ERV1 -123 491 481 4 1053 423 56 0 0 chr4 61421850 61421904 -94208216 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1053 343 343 45 69 chr4 61421904 61422112 -94208008 - MER90a LTR ERV1 -134 480 270 4 1053 308 103 0 17 chr4 61422665 61422724 -94207396 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 4 1053 279 266 0 0 chr4 61423023 61423147 -94206973 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1053 781 262 55 58 chr4 61423147 61423439 -94206681 - B4 SINE B4 0 292 2 4 1053 961 286 47 4 chr4 61423825 61424099 -94206021 + B4A SINE B4 2 287 -5 4 1053 17404 151 26 8 chr4 61424163 61427429 -94202691 - L1_Mus4 LINE L1 -1 6635 3307 4 1053 396 0 0 0 chr4 61427429 61427473 -94202647 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1053 17404 170 14 11 chr4 61427473 61428206 -94201914 - L1_Mus4 LINE L1 -2577 3306 2575 4 1053 2631 149 23 31 chr4 61428206 61428685 -94201435 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1053 59059 12 1 8 chr4 61428685 61435204 -94194916 + IAPEz-int LTR ERVK 8 6481 0 4 1053 2627 110 6 126 chr4 61435204 61435744 -94194376 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1053 8159 138 12 23 chr4 61435748 61437731 -94192389 - L1VL4 LINE L1 -1341 2218 258 4 1053 339 355 21 0 chr4 61437812 61437953 -94192167 - MER90a LTR ERV1 -200 375 232 4 1053 356 323 72 43 chr4 61438008 61438147 -94191973 - MER90a LTR ERV1 -460 154 12 4 1053 219 378 11 0 chr4 61438748 61438838 -94191282 + FAM SINE Alu 137 227 -84 4 1053 255 61 0 0 chr4 61441655 61441688 -94188432 + (CAA)n Simple_repeat Simple_repeat 3 35 0 4 1053 330 45 0 0 chr4 61441688 61441732 -94188388 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1053 434 236 37 28 chr4 61443688 61443797 -94186323 - B3 SINE B2 0 216 107 4 1053 363 289 114 38 chr4 61443797 61443955 -94186165 + B3 SINE B2 39 208 -8 4 1053 250 396 39 14 chr4 61444167 61444367 -94185753 - MIR SINE MIR -52 216 4 4 1053 363 127 0 0 chr4 61444607 61444670 -94185450 + (TCC)n Simple_repeat Simple_repeat 1 63 0 4 1053 548 339 26 40 chr4 61444734 61444961 -94185159 - B4A SINE B4 -13 279 56 4 1053 337 350 8 16 chr4 61444932 61445054 -94185066 - B1F1 SINE Alu -28 121 1 4 1053 963 219 118 59 chr4 61445605 61445944 -94184176 + RLTR9A LTR ERVK 10 368 0 4 1053 22 35 0 0 chr4 61446252 61446281 -94183839 + AT_rich Low_complexity Low_complexity 1 29 0 4 1053 387 0 0 0 chr4 61446335 61446378 -94183742 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1053 611 206 28 66 chr4 61446378 61446560 -94183560 + RLTR45-int LTR ERVK 2092 2266 -4978 4 1053 821 98 9 0 chr4 61446592 61446704 -94183416 - B1_Mm SINE Alu -1 146 34 4 1053 3912 171 52 26 chr4 61446704 61447614 -94182506 + ETnERV2-int LTR ERVK 1259 2191 -5215 5 1053 6565 250 27 52 chr4 61447714 61448259 -94181861 + RMER16-int LTR ERVK 2189 2532 -4874 5 1053 918 92 0 0 chr4 61448259 61448389 -94181731 + (TC)n Simple_repeat Simple_repeat 2 131 0 5 1053 10799 178 57 36 chr4 61448389 61450006 -94180114 + RMER16-int LTR ERVK 1566 4093 -3313 5 1053 201 39 0 0 chr4 61450006 61450032 -94180088 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1053 10799 175 59 35 chr4 61450032 61450520 -94179600 + RMER16-int LTR ERVK 3115 3601 -1805 5 1053 993 102 0 14 chr4 61450520 61450659 -94179461 + B1_Mm SINE Alu 2 138 -9 5 1053 336 48 0 0 chr4 61450659 61450701 -94179419 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1053 10799 175 59 35 chr4 61450701 61451265 -94178855 + RMER16-int LTR ERVK 3602 4171 -1235 5 1053 25 0 0 0 chr4 61451348 61451373 -94178747 + AT_rich Low_complexity Low_complexity 1 25 0 5 1053 339 274 33 33 chr4 61451533 61451654 -94178466 + ETnERV2-int LTR ERVK 6305 6425 -981 5 1053 900 227 22 97 chr4 61451982 61452260 -94177860 + RLTR9A LTR ERVK 112 368 0 5 1053 794 230 66 5 chr4 61452878 61453075 -94177045 + B3 SINE B2 1 209 -7 5 1053 329 323 16 16 chr4 61453266 61453395 -94176725 - MLT1C LTR MaLR 0 467 339 5 1053 413 268 128 5 chr4 61453598 61453760 -94176360 - MT2A LTR ERVL 0 584 347 5 1053 195 42 0 0 chr4 61453788 61453812 -94176308 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 5 1053 207 0 0 0 chr4 61453945 61453968 -94176152 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1053 286 213 0 0 chr4 61453979 61454040 -94176080 + B1_Mus2 SINE Alu 42 102 -45 5 1053 372 22 0 0 chr4 61454040 61454085 -94176035 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 5 1053 234 116 0 0 chr4 61454147 61454190 -94175930 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 5 1053 492 59 0 0 chr4 61454316 61454384 -94175736 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1053 480 163 0 0 chr4 61454384 61454470 -94175650 + (CAGAGA)n Simple_repeat Simple_repeat 1 86 0 5 1053 283 191 0 31 chr4 61454470 61454535 -94175585 + B1_Mus2 SINE Alu 42 104 -43 5 1053 1728 163 64 129 chr4 61454578 61455157 -94174963 - RLTR45-int LTR ERVK -4612 2632 2092 5 1053 528 30 0 0 chr4 61455157 61455223 -94174897 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1053 221 57 29 0 chr4 61455268 61455303 -94174817 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 5 1053 833 262 28 85 chr4 61455604 61455950 -94174170 - RLTR9A LTR ERVK 0 393 47 5 1053 269 330 25 17 chr4 61456498 61456618 -94173502 + B1F1 SINE Alu 1 121 -28 5 1053 517 340 47 38 chr4 61456605 61456816 -94173304 + B4A SINE B4 67 279 -13 5 1053 230 209 0 29 chr4 61456890 61456959 -94173161 + GA-rich Low_complexity Low_complexity 2 68 0 5 1053 466 322 32 43 chr4 61457191 61457376 -94172744 + MIR SINE MIR 9 191 -71 5 1053 451 327 57 0 chr4 61457782 61457941 -94172179 - B3 SINE B2 -10 206 39 5 1053 406 306 19 0 chr4 61457941 61458049 -94172071 + B3 SINE B2 107 216 0 5 1053 603 0 0 0 chr4 61458523 61458590 -94171530 + (CTG)n Simple_repeat Simple_repeat 1 67 0 5 1053 386 308 117 14 chr4 61463543 61463723 -94166397 + MER90a LTR ERV1 12 168 -446 5 1053 288 386 36 18 chr4 61463734 61463900 -94166220 + MER90a LTR ERV1 268 436 -178 5 1053 12874 119 8 21 chr4 61464010 61466314 -94163806 + MusHAL1 LINE L1 151 2425 -287 5 1053 438 263 97 8 chr4 61466315 61466449 -94163671 + L1M2 LINE L1 3650 3795 -2348 5 1053 6100 137 34 3 chr4 61466461 61468285 -94161835 + L1_Mus4 LINE L1 4754 6633 -3 5 1053 735 263 162 0 chr4 61468365 61468612 -94161508 - B4A SINE B4 -4 288 2 5 1053 262 331 16 41 chr4 61468616 61468739 -94161381 + MER90a LTR ERV1 454 573 -2 5 1053 503 308 20 108 chr4 61469000 61469306 -94160814 + B4 SINE B4 2 280 -12 5 1053 560 120 22 0 chr4 61469481 61469573 -94160547 + L1_Mm LINE L1 4848 4941 -942 5 1053 2215 170 21 121 chr4 61469594 61470931 -94159189 + L1Md_F LINE L1 257 1497 -4386 5 1053 1384 87 121 0 chr4 61471225 61471432 -94158688 - L1Md_T LINE L1 0 6582 6351 5 1053 22 0 0 0 chr4 61471497 61471519 -94158601 + AT_rich Low_complexity Low_complexity 1 22 0 5 1053 269 273 109 54 chr4 61471529 61471676 -94158444 + B3A SINE B2 2 156 -42 5 1053 219 114 0 0 chr4 61471677 61471712 -94158408 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 131 987 239 5 0 chr4 61472603 61472808 -94157312 + B3 SINE B2 5 210 -6 5 1054 698 217 0 0 chr4 61472852 61472972 -94157148 + B3 SINE B2 1 120 -96 5 1054 997 240 197 104 chr4 61473372 61473565 -94156555 - MT2A LTR ERVL 0 533 275 5 1054 2161 123 6 3 chr4 61473565 61473898 -94156222 + L1_Mus2 LINE L1 6233 6566 0 5 1054 997 240 197 104 chr4 61473898 61474192 -94155928 - MT2A LTR ERVL -259 274 2 5 1054 712 162 49 0 chr4 61474192 61474334 -94155786 - MERVL_2A-int LTR ERVL 0 5761 5613 5 1054 542 204 98 15 chr4 61474333 61474537 -94155583 - MERVL_2A-int LTR ERVL -78 5683 5463 5 1054 1508 209 200 40 chr4 61474549 61475083 -94155037 + L1_Mur2 LINE L1 530 1148 -5938 5 1054 3779 145 153 16 chr4 61475072 61475919 -94154201 + L1_Mur2 LINE L1 2501 3463 -2414 5 1054 336 127 30 2 chr4 61475920 61475998 -94154122 + L1_Mur2 LINE L1 3416 3499 -415 5 1054 2780 157 6 0 chr4 61475994 61476472 -94153648 + L1VL4 LINE L1 214 694 -5608 5 1054 467 265 10 0 chr4 61476498 61476600 -94153520 - B4 SINE B4 -187 105 3 5 1054 231 275 0 127 chr4 61476798 61476877 -94153243 - URR1A DNA MER1_type -157 69 1 5 1054 935 150 6 6 chr4 61477066 61477227 -94152893 + URR1A DNA MER1_type 65 225 -1 5 1054 893 300 146 41 chr4 61477398 61477760 -94152360 - MTD LTR MaLR -7 412 13 5 1054 20431 61 70 29 chr4 61478266 61481168 -94148952 - L1Md_T LINE L1 0 6582 3486 5 1054 256 295 50 79 chr4 61481168 61481308 -94148812 + B3A SINE B2 2 137 -61 5 1054 1128 84 0 0 chr4 61481315 61481494 -94148626 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1054 20431 77 103 43 chr4 61481494 61482680 -94147440 - L1Md_T LINE L1 -2407 3476 2136 5 1054 2338 99 259 0 chr4 61482682 61483065 -94147055 + RLTR45 LTR ERVK 1 482 0 5 1054 4966 74 7 19 chr4 61483065 61483765 -94146355 + RLTR45-int LTR ERVK 1 692 -6552 5 1054 1021 75 0 0 chr4 61484081 61484215 -94145905 + RLTR45-int LTR ERVK 692 825 -6419 5 1054 1519 98 21 0 chr4 61484212 61484447 -94145673 + RLTR45-int LTR ERVK 967 1206 -6038 5 1054 3164 48 0 10 chr4 61484461 61484861 -94145259 + RLTR45-int LTR ERVK 1253 1648 -5596 5 1054 518 311 0 30 chr4 61485219 61485418 -94144702 + RNERVK23-int LTR ERVK 7397 7589 -628 5 1054 357 101 0 18 chr4 61485418 61485503 -94144617 + RLTR13B1 LTR ERVK 479 594 -299 5 1054 16141 40 18 14 chr4 61485578 61485993 -94144127 + RLTR45-int LTR ERVK 1649 2069 -5175 5 1054 720 0 0 0 chr4 61485993 61486073 -94144047 + (GGAAA)n Simple_repeat Simple_repeat 5 84 0 5 1054 16141 40 18 14 chr4 61486073 61487834 -94142286 + RLTR45-int LTR ERVK 2070 3834 -3410 5 1054 6131 45 1 0 chr4 61487841 61488599 -94141521 + RLTR45-int LTR ERVK 6486 7244 0 5 1054 2900 77 156 0 chr4 61488599 61489016 -94141104 + RLTR45 LTR ERVK 1 482 0 5 1054 431 171 9 0 chr4 61489016 61489121 -94140999 - L1_Mm LINE L1 -3745 2138 2033 5 1054 5631 132 14 13 chr4 61489115 61490679 -94139441 - L1VL4 LINE L1 -1737 1822 258 5 1054 553 332 205 6 chr4 61490760 61491102 -94139018 - MER90a LTR ERV1 -200 414 5 5 1054 477 0 0 0 chr4 61494626 61494679 -94135441 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1054 251 67 0 43 chr4 61496269 61496316 -94133804 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1054 435 303 9 0 chr4 61496657 61496766 -94133354 - B3 SINE B2 0 216 107 5 1054 434 340 57 0 chr4 61496766 61496925 -94133195 + B3 SINE B2 39 206 -10 5 1054 513 333 40 15 chr4 61497315 61497516 -94132604 - MIRb SINE MIR -52 216 11 5 1054 462 79 0 0 chr4 61497758 61497821 -94132299 + (TCC)n Simple_repeat Simple_repeat 2 64 0 5 1054 618 328 45 29 chr4 61497875 61498120 -94132000 - B4A SINE B4 0 292 44 5 1054 352 333 8 16 chr4 61498087 61498209 -94131911 - B1F1 SINE Alu -28 121 1 5 1054 620 257 17 106 chr4 61498820 61499055 -94131065 + RLTR9A LTR ERVK 102 315 -53 5 1054 2401 102 63 42 chr4 61499049 61499479 -94130641 - RLTR45 LTR ERVK -43 439 1 5 1054 522 0 0 0 chr4 61499764 61499822 -94130298 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 5 1054 285 29 0 0 chr4 61499863 61499897 -94130223 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1054 4436 164 72 30 chr4 61500000 61500960 -94129160 + ETnERV2-int LTR ERVK 504 2191 -5215 1 1054 12656 182 49 40 chr4 61501079 61502965 -94127155 + RMER16-int LTR ERVK 1433 3917 -3489 2 1054 348 24 0 0 chr4 61502965 61503006 -94127114 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1054 315 0 0 0 chr4 61503006 61503040 -94127080 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1054 12656 164 56 34 chr4 61503040 61504344 -94125776 + RMER16-int LTR ERVK 2862 4175 -1231 2 1054 272 274 40 40 chr4 61504581 61504680 -94125440 + ETnERV2-int LTR ERVK 6311 6409 -997 5 1054 300 167 0 36 chr4 61505023 61505079 -94125041 + ETnERV2-int LTR ERVK 7331 7384 -22 5 1054 915 248 7 84 chr4 61505165 61505451 -94124669 + RLTR9A LTR ERVK 105 368 0 6 1054 655 240 171 6 chr4 61506071 61506247 -94123873 + B3 SINE B2 1 205 -11 7 1054 702 311 31 44 chr4 61506442 61506735 -94123385 - MLT1B LTR MaLR 0 390 102 8 1054 882 234 13 51 chr4 61506997 61507231 -94122889 + URR1A DNA MER1_type 1 225 -1 9 1054 909 268 159 58 chr4 61507408 61507752 -94122368 - MTD LTR MaLR -40 379 14 1 1054 637 251 34 132 chr4 61508329 61508426 -94121694 - MT2A LTR ERVL -231 302 251 1 1054 2418 111 3 3 chr4 61508426 61508760 -94121360 + L1_Mus2 LINE L1 6233 6566 0 1 1054 637 254 77 26 chr4 61508760 61508912 -94121208 - MT2A LTR ERVL -283 250 99 1 1054 372 184 79 0 chr4 61508983 61509059 -94121061 - MT2A LTR ERVL -451 82 1 1 1054 531 224 52 0 chr4 61509062 61509196 -94120924 - MERVL_2A-int LTR ERVL -3 5758 5618 1 1054 826 159 98 10 chr4 61509200 61509403 -94120717 - MERVL_2A-int LTR ERVL -78 5683 5463 1 1054 1563 235 190 20 chr4 61509410 61509945 -94120175 + L1_Mur2 LINE L1 525 1150 -5936 1 1054 3100 201 152 22 chr4 61509924 61510805 -94119315 + L1_Mur2 LINE L1 2498 3493 -2387 1 1054 2010 157 3 0 chr4 61510803 61511128 -94118992 + L1VL4 LINE L1 213 538 -5764 1 1054 472 272 10 0 chr4 61511131 61511234 -94118886 - B4 SINE B4 -187 105 2 1 1054 685 302 6 0 chr4 61511324 61511483 -94118637 + B4A SINE B4 127 286 -6 1 1054 348 354 95 0 chr4 61511576 61511734 -94118386 - MER90a LTR ERV1 -167 447 275 1 1054 299 338 50 22 chr4 61511793 61511932 -94118188 - MER90a LTR ERV1 -460 154 12 1 1054 221 155 0 17 chr4 61512293 61512352 -94117768 + (TTAGGG)n Simple_repeat Simple_repeat 3 60 0 1 1054 294 152 0 0 chr4 61512652 61512711 -94117409 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1054 677 289 45 101 chr4 61512756 61513064 -94117056 - B4 SINE B4 0 292 2 2 1054 2504 153 43 22 chr4 61513209 61513671 -94116449 + RLTR45 LTR ERVK 11 482 0 2 1054 2697 138 7 14 chr4 61513754 61514172 -94115948 - L1_Mus4 LINE L1 -1 6635 6221 2 1054 8506 141 48 1 chr4 61514172 61515850 -94114270 + L1_Mus4 LINE L1 4233 6006 -630 2 1054 2669 124 13 4 chr4 61515845 61516453 -94113667 - L1VL4 LINE L1 -2463 1096 483 2 1054 1477 237 63 68 chr4 61516668 61517185 -94112935 - RLTR1B LTR ERV1 0 587 1 2 1054 1002 258 5 0 chr4 61519585 61519794 -94110326 + B3 SINE B2 1 210 -6 2 1054 642 240 0 0 chr4 61519838 61519959 -94110161 + B3 SINE B2 1 121 -95 2 1054 801 257 171 113 chr4 61520352 61520545 -94109575 - MT2A LTR ERVL 0 533 289 2 1054 2402 112 6 3 chr4 61520545 61520877 -94109243 + L1_Mus2 LINE L1 6234 6566 0 2 1054 801 257 171 113 chr4 61520877 61521187 -94108933 - MT2A LTR ERVL -245 288 2 2 1054 564 211 53 0 chr4 61521190 61521323 -94108797 - MERVL_2A-int LTR ERVL -3 5758 5619 2 1054 675 207 95 9 chr4 61521321 61521531 -94108589 - MERVL_2A-int LTR ERVL -71 5690 5463 2 1054 1706 187 24 6 chr4 61521725 61522053 -94108067 + L1_Mur2 LINE L1 817 1150 -5936 3 1054 3100 209 147 29 chr4 61522032 61522922 -94107198 + L1_Mur2 LINE L1 2498 3492 -2388 3 1054 2032 143 3 21 chr4 61522915 61523243 -94106877 + MusHAL1 LINE L1 25 346 -3008 3 1054 950 175 27 19 chr4 61523244 61523426 -94106694 + RLTR9D LTR ERVK 123 400 -3 3 1054 546 200 8 0 chr4 61523437 61523557 -94106563 + L1VL4 LINE L1 575 695 -5607 3 1054 446 289 10 0 chr4 61523581 61523685 -94106435 - B4 SINE B4 -186 106 2 3 1054 1056 277 47 4 chr4 61524078 61524353 -94105767 + B4A SINE B4 2 288 -4 3 1054 198 191 0 0 chr4 61524357 61524399 -94105721 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1054 373 351 91 0 chr4 61524442 61524607 -94105513 - MER90a LTR ERV1 -167 447 268 3 1054 361 319 62 62 chr4 61524628 61524805 -94105315 - MER90a LTR ERV1 -433 181 5 3 1054 314 115 0 16 chr4 61525156 61525218 -94104902 + (TTAGGG)n Simple_repeat Simple_repeat 3 63 0 3 1054 372 270 0 0 chr4 61525516 61525664 -94104456 + (TG)n Simple_repeat Simple_repeat 1 148 0 3 1054 787 263 32 105 chr4 61525664 61525978 -94104142 - B4 SINE B4 0 292 2 4 1054 1070 285 47 4 chr4 61526363 61526638 -94103482 + B4A SINE B4 2 288 -4 4 1054 24200 147 21 8 chr4 61526715 61528922 -94101198 - L1_Mus4 LINE L1 -1 6635 4392 4 1054 3242 23 0 0 chr4 61528922 61529268 -94100852 + ORR1A0 LTR MaLR 1 346 0 4 1054 24200 180 11 14 chr4 61529268 61533064 -94097056 - L1_Mus4 LINE L1 -1492 4391 613 4 1054 552 326 222 22 chr4 61533122 61533483 -94096637 - MER90a LTR ERV1 -177 437 5 4 1054 225 372 12 0 chr4 61534067 61534153 -94095967 + AluG_3 SINE Alu 137 223 -88 4 1054 652 61 20 0 chr4 61536964 61537062 -94093058 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1054 3924 64 12 47 chr4 61537903 61538414 -94091706 - MT2_Mm LTR ERVL 0 493 1 4 1054 331 26 0 0 chr4 61538414 61538453 -94091667 - MERVL-int LTR ERVL 0 5485 5447 4 1054 333 116 27 55 chr4 61538455 61538528 -94091592 - ORR1A3-int LTR MaLR -1326 637 567 4 1054 369 97 65 0 chr4 61538528 61538590 -94091530 - MERVL-int LTR ERVL -132 5629 5564 4 1054 27808 51 7 2 chr4 61538621 61541968 -94088152 - MERVL-int LTR ERVL -105 5380 2018 4 1054 10312 57 2 19 chr4 61541962 61543259 -94086861 - MERVL-int LTR ERVL -4209 1276 1 4 1054 3723 64 53 0 chr4 61543259 61543710 -94086410 - MT2C_Mm LTR ERVL 0 475 1 4 1054 255 31 0 0 chr4 61544318 61544350 -94085770 + (CAG)n Simple_repeat Simple_repeat 1 32 0 5 1054 483 217 37 28 chr4 61544834 61544943 -94085177 - B3 SINE B2 0 216 107 5 1054 369 358 49 0 chr4 61544943 61545105 -94085015 + B3 SINE B2 39 208 -8 5 1054 220 385 50 7 chr4 61545490 61545687 -94084433 - MIR SINE MIR -52 216 4 5 1054 435 68 0 0 chr4 61545935 61545994 -94084126 + (TCC)n Simple_repeat Simple_repeat 2 60 0 5 1054 618 300 40 58 chr4 61546070 61546293 -94083827 - B4A SINE B4 -18 274 56 5 1054 854 223 24 94 chr4 61546969 61547256 -94082864 + RLTR9A LTR ERVK 102 368 0 5 1054 22 0 0 0 chr4 61547573 61547595 -94082525 + AT_rich Low_complexity Low_complexity 1 22 0 5 1054 342 0 0 0 chr4 61547633 61547671 -94082449 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1054 798 207 25 65 chr4 61547674 61547875 -94082245 + RMER16-int LTR ERVK 2072 2264 -4980 5 1054 396 0 0 0 chr4 61547884 61547928 -94082192 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1054 780 90 9 26 chr4 61547928 61548032 -94082088 - B1_Mm SINE Alu -9 138 34 6 1054 2454 174 34 69 chr4 61548032 61548624 -94081496 + ETnERV2-int LTR ERVK 1259 1829 -5577 6 1054 1043 31 0 0 chr4 61548624 61548751 -94081369 + RLTR1B LTR ERV1 1 127 -385 6 1054 2933 190 29 32 chr4 61548751 61549405 -94080715 + ETnERV2-int LTR ERVK 2860 3511 -3895 6 1054 1375 130 60 9 chr4 61549402 61549635 -94080485 + RMER16-int LTR ERVK 3368 3612 -1794 5 1054 1089 103 0 14 chr4 61549641 61549788 -94080332 + B1_Mm SINE Alu 2 146 -1 6 1054 1127 215 128 36 chr4 61549808 61550112 -94080008 - IAPEY3_LTR LTR ERVK 0 332 1 6 1054 1405 208 53 9 chr4 61550112 61550452 -94079668 - IAP-d-int LTR ERVK -2 6479 6125 6 1054 1699 124 56 31 chr4 61550469 61550796 -94079324 - IAPEY3-int LTR ERVK -342 7338 6965 6 1054 1411 124 107 0 chr4 61550796 61551021 -94079099 - IAP-d-int LTR ERVK -1287 5255 5007 6 1054 378 140 0 0 chr4 61551021 61551078 -94079042 - IAP-d-int LTR ERVK -6039 503 447 6 1054 292 260 49 20 chr4 61551095 61551197 -94078923 - RMER16-int LTR ERVK -6015 1566 1462 6 1054 588 247 203 18 chr4 61551307 61551534 -94078586 - RMER16-int LTR ERVK -5475 662 394 6 1054 717 207 136 0 chr4 61551510 61551679 -94078441 - RMER16-int LTR ERVK -4903 503 312 6 1054 825 133 7 7 chr4 61551657 61551793 -94078327 - MMERVK10C-int LTR ERVK -6738 843 708 6 1054 1820 124 111 129 chr4 61551892 61552326 -94077794 - MMERVK10C-int LTR ERVK -7155 426 1 6 1054 1207 194 141 49 chr4 61552326 61552630 -94077490 - IAPEY3_LTR LTR ERVK 0 332 1 6 1054 2947 153 50 40 chr4 61552630 61553208 -94076912 + RMER16-int LTR ERVK 3605 4188 -1218 7 1054 295 280 39 39 chr4 61553424 61553528 -94076592 + ETnERV2-int LTR ERVK 6306 6409 -997 7 1054 2872 75 0 0 chr4 61553530 61553876 -94076244 - ORR1A1 LTR MaLR 0 346 1 7 1054 3201 86 20 41 chr4 61553876 61554312 -94075808 - ORR1A1-int LTR MaLR 0 1792 1353 7 1054 4418 91 30 3 chr4 61554312 61554884 -94075236 - LTRIS_Mus LTR ERV1 0 587 1 7 1054 3201 86 20 41 chr4 61554884 61554954 -94075166 - ORR1A1-int LTR MaLR -440 1352 1297 7 1054 5639 130 23 24 chr4 61554954 61555830 -94074290 - MuRRS-int LTR ERV1 -69 4621 3747 7 1054 974 280 0 0 chr4 61555876 61556112 -94074008 - MuRRS-int LTR ERV1 -2271 2792 2557 7 1054 3916 62 4 2 chr4 61556112 61556614 -94073506 + RLTR1C LTR ERV1 1 503 0 7 1054 2531 132 2 48 chr4 61556614 61556888 -94073232 + MMERGLN-int LTR ERV1 1 268 -7288 7 1054 3083 26 0 0 chr4 61556888 61557234 -94072886 + ORR1A0 LTR MaLR 1 346 0 7 1054 2531 132 2 48 chr4 61557234 61557397 -94072723 + MMERGLN-int LTR ERV1 269 418 -7138 7 1054 2501 241 4 4 chr4 61557432 61557953 -94072167 + MMERGLN-int LTR ERV1 388 908 -6648 7 1054 5040 209 9 7 chr4 61557953 61558903 -94071217 + MMERGLN-int LTR ERV1 1057 2008 -5548 7 1054 1294 251 4 4 chr4 61558894 61559166 -94070954 + MMERGLN-int LTR ERV1 5087 5358 -2198 7 1054 335 148 0 80 chr4 61559350 61559438 -94070682 + MMVL30-int LTR ERV1 674 754 -2545 7 1054 2461 92 6 3 chr4 61559517 61559856 -94070264 + MMVL30-int LTR ERV1 1114 1453 -2245 7 1054 493 158 112 19 chr4 61560013 61560174 -94069946 + MMVL30-int LTR ERV1 1024 1199 -2100 7 1054 5584 62 8 4 chr4 61560434 61561141 -94068979 + MMVL30-int LTR ERV1 1501 2210 -1488 7 1054 1988 62 4 23 chr4 61561138 61561400 -94068720 + MMVL30-int LTR ERV1 3345 3601 -97 7 1054 653 118 22 56 chr4 61561395 61561534 -94068586 + MMERGLN-int LTR ERV1 3221 3299 0 7 1054 3386 69 44 2 chr4 61561534 61562010 -94068110 + RLTR1C LTR ERV1 1 496 -7 7 1054 3019 243 69 46 chr4 61562016 61564011 -94066109 - MuRRS-int LTR ERV1 -2505 2558 346 7 1054 360 0 0 0 chr4 61564011 61564051 -94066069 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1054 3019 156 55 21 chr4 61564051 61564458 -94065662 - MuRRS-int LTR ERV1 -3996 694 3 7 1054 4552 79 5 0 chr4 61564459 61565043 -94065077 - LTRIS_Mus LTR ERV1 0 587 1 7 1054 8340 85 2 0 chr4 61565044 61566275 -94063845 - ORR1A1-int LTR MaLR -558 1234 1 8 1054 2441 54 9 3 chr4 61566279 61566615 -94063505 - ORR1A1 LTR MaLR -8 338 1 8 1054 325 148 0 36 chr4 61566841 61566897 -94063223 + ETnERV2-int LTR ERVK 7331 7384 -22 8 1054 812 248 14 92 chr4 61566984 61567268 -94062852 + RLTR9A LTR ERVK 107 368 0 8 1054 885 215 71 5 chr4 61567895 61568091 -94062029 + B3 SINE B2 1 209 -7 8 1054 609 330 35 25 chr4 61568281 61568567 -94061553 - MLT1B LTR MaLR 0 390 102 8 1054 716 284 114 39 chr4 61568761 61569106 -94061014 - MTD LTR MaLR -32 387 14 8 1054 221 255 28 101 chr4 61569702 61569811 -94060309 + B3A SINE B2 2 102 -96 8 1054 297 0 0 0 chr4 61569851 61569884 -94060236 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1054 378 94 0 0 chr4 61569884 61569948 -94060172 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 1054 851 267 9 0 chr4 61570848 61571058 -94059062 + B3 SINE B2 5 216 0 8 1054 2890 206 91 105 chr4 61571093 61571147 -94058973 + MuRRS-int LTR ERV1 640 693 -3997 9 1054 189 0 0 0 chr4 61571147 61571168 -94058952 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 1054 2890 206 91 105 chr4 61571168 61572342 -94057778 + MuRRS-int LTR ERV1 694 1850 -2840 9 1054 2930 280 12 12 chr4 61572331 61573071 -94057049 + MuRRS-int LTR ERV1 2053 2792 -2271 9 1054 5762 137 47 12 chr4 61573099 61574011 -94056109 + MuRRS-int LTR ERV1 3747 4690 0 9 1054 4590 62 12 0 chr4 61574011 61574588 -94055532 + LTRIS_Mus LTR ERV1 1 584 -3 9 1054 4904 126 40 0 chr4 61574588 61575391 -94054729 - L1_Mm LINE L1 -2149 3734 2900 9 1054 3846 126 27 12 chr4 61575392 61576059 -94054061 - RLTR13C2 LTR ERVK -1 807 131 9 1054 3925 177 27 29 chr4 61576065 61577015 -94053105 + RLTR13A LTR ERVK 8 958 0 9 1054 907 117 0 0 chr4 61577015 61577151 -94052969 - RLTR13C2 LTR ERVK -672 136 1 9 1054 7436 126 22 25 chr4 61577152 61578446 -94051674 - MusHAL1 LINE L1 -1012 1700 411 9 1054 1407 59 0 0 chr4 61578448 61578634 -94051486 + MT2C_Mm LTR ERVL 290 475 0 9 1054 8366 78 12 4 chr4 61578634 61579879 -94050241 + ORR1A1-int LTR MaLR 1 1255 -537 9 1054 2255 61 38 0 chr4 61579879 61580192 -94049928 + IAPLTR2b LTR ERVK 1 325 -2 9 1054 2406 125 60 9 chr4 61580194 61580634 -94049486 + ETnERV2-int LTR ERVK 1 577 -5904 9 1054 2185 63 0 0 chr4 61580620 61580888 -94049232 + IAPLTR4_I LTR ERVK 915 1182 -288 9 1054 361 109 0 0 chr4 61580888 61580943 -94049177 + B1_Mus1 SINE Alu 1 55 -93 1 1054 1908 86 4 0 chr4 61580944 61581189 -94048931 + IAPEY3-int LTR ERVK 2252 2497 -5183 1 1054 8211 225 21 24 chr4 61581184 61583088 -94047032 + IAPLTR3-int LTR ERVK 4904 6801 -20 1 1054 2466 64 38 0 chr4 61583088 61583401 -94046719 + IAPLTR2b LTR ERVK 1 325 -2 1 1054 448 125 5 9 chr4 61583403 61583490 -94046630 + ORR1A1-int LTR MaLR 1249 1316 -476 1 1054 2870 47 9 0 chr4 61583490 61583832 -94046288 + ORR1A1 LTR MaLR 2 346 0 1 1054 3581 161 19 27 chr4 61583842 61584408 -94045712 + ETnERV2-int LTR ERVK 1494 2054 -5352 9 1054 3612 18 0 0 chr4 61584408 61584804 -94045316 - MTA_Mm LTR MaLR 0 396 1 1 1054 8976 41 9 2 chr4 61584804 61585894 -94044226 - MTA_Mm-int LTR MaLR 0 1098 1 1 1054 3612 18 0 0 chr4 61585894 61586290 -94043830 - MTA_Mm LTR MaLR 0 396 1 1 1054 3581 161 19 27 chr4 61586290 61586425 -94043695 + ETnERV2-int LTR ERVK 2055 2189 -5217 9 1054 12333 176 60 37 chr4 61586526 61588790 -94041330 + RMER16-int LTR ERVK 1415 4094 -3312 1 1054 4047 62 87 2 chr4 61588790 61589310 -94040810 + LTRIS2 LTR ERV1 1 564 0 1 1054 12333 160 69 30 chr4 61589310 61590228 -94039892 + RMER16-int LTR ERVK 3216 4176 -1230 1 1054 315 161 0 35 chr4 61590295 61590353 -94039767 + ETnERV2-int LTR ERVK 6156 6211 -1195 1 1054 273 236 44 22 chr4 61590511 61590602 -94039518 + ETnERV2-int LTR ERVK 6335 6427 -979 1 1054 281 173 51 51 chr4 61590801 61590880 -94039240 + ETnERV2-int LTR ERVK 7327 7405 -1 1 1054 694 240 21 75 chr4 61590997 61591236 -94038884 + RLTR9A LTR ERVK 142 367 -1 1 1054 3525 49 52 17 chr4 61591649 61592108 -94038012 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1054 869 219 66 5 chr4 61592330 61592527 -94037593 + B3 SINE B2 1 209 -7 1 1054 701 305 87 35 chr4 61592717 61593084 -94037036 - MLT1B LTR MaLR 0 390 5 1 1054 921 209 9 52 chr4 61593269 61593501 -94036619 + URR1A DNA MER1_type 4 225 -1 1 1054 790 274 158 72 chr4 61593678 61594024 -94036096 - MTD LTR MaLR -20 399 12 1 1054 182 128 43 0 chr4 61594065 61594112 -94036008 + A-rich Low_complexity Low_complexity 2 50 0 1 1054 210 269 128 95 chr4 61594630 61594778 -94035342 + B3A SINE B2 2 154 -44 1 1054 621 129 0 0 chr4 61594778 61594894 -94035226 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1054 8192 57 4 0 chr4 61595557 61596567 -94033553 + L1Md_F2 LINE L1 4573 5586 -297 1 1054 8272 42 3 8 chr4 61596567 61597568 -94032552 + L1Md_F2 LINE L1 5587 6582 0 1 1054 279 0 0 0 chr4 61597719 61597750 -94032370 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1054 899 255 5 5 chr4 61597852 61598057 -94032063 + B3 SINE B2 6 210 -6 1 1054 680 207 0 0 chr4 61598101 61598222 -94031898 + B3 SINE B2 1 121 -95 1 1054 536 268 109 89 chr4 61598610 61598778 -94031342 - MT2A LTR ERVL -231 302 245 1 1054 1522 100 4 38 chr4 61598778 61599017 -94031103 + L1_Mus2 LINE L1 6336 6566 0 1 1054 536 293 29 43 chr4 61599017 61599167 -94030953 - MT2A LTR ERVL -289 244 99 1 1054 309 240 57 136 chr4 61599176 61599316 -94030804 - MT2A LTR ERVL -404 129 1 1 1054 640 199 52 0 chr4 61599316 61599452 -94030668 - MERVL_2A-int LTR ERVL 0 5761 5619 1 1054 1864 196 46 15 chr4 61599720 61600204 -94029916 + L1_Mur2 LINE L1 579 1150 -5936 1 1054 4050 142 153 30 chr4 61600191 61601073 -94029047 + L1_Mur2 LINE L1 2501 3491 -2386 1 1054 3106 140 4 0 chr4 61601065 61601545 -94028575 + L1VL4 LINE L1 213 694 -5608 1 1054 354 287 30 0 chr4 61601571 61601672 -94028448 - B4 SINE B4 -187 105 2 1 1054 1008 257 55 4 chr4 61602059 61602332 -94027788 + B4A SINE B4 2 288 -4 1 131 22463 161 47 10 chr4 61602411 61606609 -94023511 - L1_Mus4 LINE L1 -1 6635 2215 1 1055 1414 94 11 0 chr4 61606609 61606800 -94023320 - B2_Mm1t SINE B2 0 193 1 1 1055 22463 186 37 12 chr4 61606800 61608421 -94021699 - L1_Mus4 LINE L1 -3669 2214 613 1 1055 349 313 63 35 chr4 61608539 61608844 -94021276 - MER90a LTR ERV1 -240 374 5 1 1055 1979 97 3 70 chr4 61610621 61610977 -94019143 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1055 58778 7 15 0 chr4 61610977 61617355 -94012765 - IAPEz-int LTR ERVK 0 6481 9 1 1055 2174 96 3 70 chr4 61617355 61617714 -94012406 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 1055 453 127 0 0 chr4 61619393 61619472 -94010648 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1055 270 73 0 0 chr4 61621058 61621099 -94009021 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1055 379 317 8 0 chr4 61621436 61621556 -94008564 - B3 SINE B2 0 216 96 1 1055 312 324 66 20 chr4 61621554 61621705 -94008415 + B3 SINE B2 49 206 -10 1 1055 368 332 60 25 chr4 61622096 61622297 -94007823 - MIRb SINE MIR -52 216 9 1 1055 282 179 0 0 chr4 61622532 61622588 -94007532 + CT-rich Low_complexity Low_complexity 1 56 0 1 1055 472 332 43 38 chr4 61622654 61622864 -94007256 - B4A SINE B4 -13 279 69 1 1055 318 333 18 9 chr4 61622859 61622968 -94007152 - B1F1 SINE Alu -39 110 1 1 1055 736 239 14 97 chr4 61623575 61623863 -94006257 + RLTR9A LTR ERVK 105 368 0 1 1055 591 15 0 0 chr4 61624179 61624247 -94005873 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 1 1055 5073 177 45 47 chr4 61624297 61625439 -94004681 + ETnERV2-int LTR ERVK 1053 2191 -5215 1 1055 6282 212 27 58 chr4 61625540 61627090 -94003030 + ETnERV2-int LTR ERVK 1415 3541 -3865 1 1055 1639 36 0 5 chr4 61627090 61627283 -94002837 + B2_Mm1a SINE B2 2 193 0 1 1055 6282 199 28 60 chr4 61627283 61627423 -94002697 + ETnERV2-int LTR ERVK 3542 3684 -3722 1 1055 6907 160 43 30 chr4 61627426 61628784 -94001336 + RMER16-int LTR ERVK 2801 4176 -1230 1 1055 276 192 0 19 chr4 61628871 61628924 -94001196 + ETnERV2-int LTR ERVK 6173 6224 -1182 1 1055 4167 67 40 13 chr4 61628965 61629510 -94000610 - LTRIS2 LTR ERV1 0 564 5 1 1055 277 198 48 24 chr4 61629617 61629700 -94000420 + ETnERV2-int LTR ERVK 6336 6420 -986 1 1055 289 197 25 50 chr4 61629907 61629987 -94000133 + ETnERV2-int LTR ERVK 7327 7404 -2 1 1055 699 251 17 98 chr4 61630051 61630338 -93999782 + RLTR9A LTR ERVK 103 366 -2 1 1055 773 231 71 5 chr4 61630967 61631163 -93998957 + B3 SINE B2 1 209 -7 1 1055 833 292 94 17 chr4 61631354 61631716 -93998404 - MLT1B LTR MaLR 0 390 1 1 1055 815 237 4 55 chr4 61631895 61632132 -93997988 + URR1A DNA MER1_type 1 225 -1 1 1055 1103 82 7 0 chr4 61632187 61632333 -93997787 + B1_Mm SINE Alu 1 147 0 1 1055 756 263 98 63 chr4 61632503 61632844 -93997276 - MTD LTR MaLR -20 399 12 1 1055 228 122 0 0 chr4 61632886 61632927 -93997193 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1055 241 236 124 90 chr4 61633460 61633637 -93996483 + B3A SINE B2 2 184 -14 1 1055 474 172 0 0 chr4 61633645 61633773 -93996347 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 1055 831 215 60 5 chr4 61634663 61634864 -93995256 + B3 SINE B2 5 216 0 1 1055 566 258 0 0 chr4 61634903 61635023 -93995097 + B3 SINE B2 2 121 -95 1 1055 217 341 0 33 chr4 61635130 61635221 -93994899 - BC1_Mm scRNA scRNA -64 88 1 1 1055 484 239 70 3 chr4 61635698 61635850 -93994270 + MuLV-int LTR ERV1 1401 1527 -6251 1 1055 1697 153 23 65 chr4 61635862 61636246 -93993874 - RLTR9A LTR ERVK 0 368 1 1 1055 3301 336 60 43 chr4 61636248 61637446 -93992674 + MuLV-int LTR ERV1 1466 2696 -4860 1 1055 2086 50 269 0 chr4 61637446 61637725 -93992395 - IAPEY2_LTR LTR ERVK -3 354 1 1 1055 3301 330 58 41 chr4 61637725 61639448 -93990672 + MuLV-int LTR ERV1 2657 4411 -3195 1 1055 438 235 31 0 chr4 61639839 61639937 -93990183 + MuRRS4-int LTR ERV1 3548 3648 -1415 1 1055 13319 159 14 73 chr4 61639946 61640571 -93989549 + Lx5 LINE L1 1039 1667 -4213 1 1055 6247 70 22 13 chr4 61640571 61641224 -93988896 + L1Md_F2 LINE L1 5740 6389 -193 1 1055 2731 131 35 37 chr4 61641224 61641707 -93988413 - RLTR45 LTR ERVK 0 482 1 1 1055 6247 70 22 13 chr4 61641707 61641886 -93988234 + L1Md_F2 LINE L1 6390 6579 -3 1 1055 13319 221 24 143 chr4 61641886 61642221 -93987899 + Lx5 LINE L1 1668 1975 -3905 1 1055 6202 127 16 7 chr4 61642221 61643171 -93986949 + RMER17B LTR ERVK 1 958 0 1 1055 13319 221 24 143 chr4 61643171 61643239 -93986881 + Lx5 LINE L1 1976 2027 -3853 1 1055 405 0 0 0 chr4 61643239 61643284 -93986836 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1 1055 992 90 19 19 chr4 61643284 61643442 -93986678 - B2_Mm2 SINE B2 -34 161 4 1 1055 13863 194 30 99 chr4 61643442 61648457 -93981663 + Lx5 LINE L1 2028 6662 -388 1 1055 2133 252 63 29 chr4 61648446 61649253 -93980867 + RMER1B Other Other 59 1057 -9 1 1055 7990 45 12 0 chr4 61649287 61650400 -93979720 - L1Md_F2 LINE L1 0 6582 5450 1 1055 2764 139 77 27 chr4 61650415 61650933 -93979187 + RMER16-int LTR ERVK 3633 4176 -1230 1 1055 315 161 0 35 chr4 61650999 61651057 -93979063 + ETnERV2-int LTR ERVK 6156 6211 -1195 1 1055 704 241 21 74 chr4 61651200 61651442 -93978678 + RLTR9A LTR ERVK 139 367 -1 1 1055 901 209 66 5 chr4 61652071 61652268 -93977852 + B3 SINE B2 1 209 -7 1 1055 683 310 95 19 chr4 61652458 61652817 -93977303 - MLT1B LTR MaLR 0 390 5 1 1055 901 215 25 68 chr4 61653002 61653237 -93976883 + URR1A DNA MER1_type 1 225 -1 1 1055 1623 42 0 0 chr4 61653391 61653580 -93976540 - B2_Mm1a SINE B2 -4 189 1 1 1055 827 249 202 65 chr4 61653605 61653957 -93976163 - MTD LTR MaLR -7 412 13 1 1055 272 105 35 0 chr4 61654012 61654069 -93976051 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1055 11037 66 0 0 chr4 61654627 61656029 -93974091 + L1_Mm LINE L1 3834 5235 -648 1 1055 7598 40 0 1 chr4 61656029 61656930 -93973190 + L1Md_T LINE L1 5683 6582 0 1 1055 855 56 0 0 chr4 61656933 61657040 -93973080 + L1Md_T LINE L1 5129 5235 -648 1 1055 7605 40 0 2 chr4 61657040 61657942 -93972178 + L1Md_T LINE L1 5683 6582 0 1 1055 855 89 0 24 chr4 61657942 61658052 -93972068 + L1_Mm LINE L1 5125 5234 -649 1 1055 7659 37 0 2 chr4 61658052 61658954 -93971166 + L1Md_T LINE L1 5683 6582 0 1 1055 4620 57 0 14 chr4 61658938 61659522 -93970598 + L1Md_T LINE L1 6005 6580 -2 1 1055 233 258 131 46 chr4 61659522 61659544 -93970576 + L1_Rod LINE L1 5211 5231 -616 1 1055 919 243 5 5 chr4 61659771 61659982 -93970138 + B3 SINE B2 6 216 0 1 1055 626 223 0 0 chr4 61660020 61660141 -93969979 + B3 SINE B2 1 121 -95 1 1055 734 256 165 111 chr4 61660529 61660718 -93969402 - MT2A LTR ERVL 0 601 251 1 1055 2128 114 3 62 chr4 61660718 61661073 -93969047 + L1_Mus2 LINE L1 6233 6566 0 1 1055 734 249 184 112 chr4 61661073 61661360 -93968760 - MT2A LTR ERVL -283 250 2 1 1055 571 176 92 0 chr4 61661360 61661491 -93968629 - MERVL_2A-int LTR ERVL 0 5761 5619 1 1055 577 220 68 12 chr4 61661497 61661658 -93968462 - MERVL_2A-int LTR ERVL -79 5682 5513 1 1055 252 300 23 23 chr4 61661758 61661891 -93968229 + L1_Mur2 LINE L1 579 711 -6375 1 1055 1674 185 30 12 chr4 61661913 61662242 -93967878 + L1_Mur2 LINE L1 816 1150 -5936 1 1055 2940 207 145 32 chr4 61662229 61663113 -93967007 + L1_Mur2 LINE L1 2511 3494 -2386 1 1055 2791 156 17 0 chr4 61663103 61663566 -93966554 + L1VL4 LINE L1 224 694 -5608 1 1055 387 274 20 0 chr4 61663592 61663694 -93966426 - B4 SINE B4 -187 105 2 1 1055 268 267 40 49 chr4 61663957 61664078 -93966042 - MER90a LTR ERV1 -18 596 454 1 1055 933 292 47 4 chr4 61664082 61664357 -93965763 + B4A SINE B4 2 288 -4 1 1055 300 154 0 0 chr4 61664373 61664425 -93965695 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1055 228 330 54 11 chr4 61664520 61664612 -93965508 - MER90 LTR ERV1 -440 135 40 1 1055 3402 71 36 14 chr4 61664812 61665056 -93965064 + RLTR1B LTR ERV1 1 242 -270 1 1055 2858 64 141 139 chr4 61665056 61665567 -93964553 + RLTR1B LTR ERV1 1 512 0 1 1055 3402 71 36 14 chr4 61665567 61665632 -93964488 + RLTR1B LTR ERV1 243 303 -209 1 1055 198 0 0 0 chr4 61665632 61665654 -93964466 + (CCCCAG)n Simple_repeat Simple_repeat 1 22 0 1 1055 3402 71 36 14 chr4 61665654 61665844 -93964276 + RLTR1B LTR ERV1 304 510 -2 1 1055 286 139 0 27 chr4 61666073 61666147 -93963973 + (TTAGGG)n Simple_repeat Simple_repeat 3 74 0 2 1055 225 0 0 0 chr4 61666458 61666483 -93963637 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1055 441 0 0 0 chr4 61666483 61666531 -93963589 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1055 575 276 79 76 chr4 61666582 61666872 -93963248 - B4 SINE B4 0 292 2 2 1055 983 272 47 4 chr4 61667259 61667536 -93962584 + B4A SINE B4 2 290 -2 2 1055 521 190 10 0 chr4 61667545 61667645 -93962475 - L1M2 LINE L1 -2388 3755 3655 2 1055 13116 136 23 19 chr4 61667650 61670648 -93959472 - L1VL4 LINE L1 -286 3273 258 2 1055 459 324 237 21 chr4 61670727 61671064 -93959056 - MER90a LTR ERV1 -200 414 5 1 1055 2910 43 0 0 chr4 61673983 61674329 -93955791 - ORR1A0 LTR MaLR 0 346 1 2 1055 486 0 0 0 chr4 61674377 61674431 -93955689 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1055 461 269 18 9 chr4 61676369 61676478 -93953642 - B3 SINE B2 0 216 107 2 1055 475 281 64 19 chr4 61676489 61676645 -93953475 + B3 SINE B2 50 212 -4 2 1055 429 329 22 66 chr4 61677021 61677233 -93952887 - MIRb SINE MIR -63 205 4 2 1055 201 74 0 0 chr4 61677469 61677496 -93952624 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 1055 646 335 29 42 chr4 61677552 61677792 -93952328 - B4A SINE B4 0 292 56 2 1055 342 353 17 8 chr4 61677765 61677885 -93952235 - B1F1 SINE Alu -28 121 1 2 1055 889 225 32 93 chr4 61678500 61678779 -93951341 + RLTR9A LTR ERVK 97 358 -10 2 1055 264 59 0 0 chr4 61679097 61679131 -93950989 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 2 1055 396 0 0 0 chr4 61679170 61679214 -93950906 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1055 2448 171 85 64 chr4 61679214 61679887 -93950233 + ETnERV2-int LTR ERVK 1075 1761 -5645 2 1055 3809 115 5 11 chr4 61679900 61680472 -93949648 + RLTR1D LTR ERV1 37 605 0 2 1055 2054 170 19 16 chr4 61680475 61680899 -93949221 + ETnERV2-int LTR ERVK 2775 3199 -4045 2 1055 675 279 14 65 chr4 61681000 61681303 -93948817 + RMER16-int LTR ERVK 2189 2329 -5077 2 1055 1252 34 0 0 chr4 61681379 61681526 -93948594 - B1_Mus2 SINE Alu 0 147 1 2 1055 11164 191 43 46 chr4 61681533 61682105 -93948015 + RMER16-int LTR ERVK 1566 1825 -3581 2 1055 1576 43 0 0 chr4 61682105 61682291 -93947829 - B2_Mm1t SINE B2 -6 187 2 2 1055 11164 169 53 36 chr4 61682291 61683322 -93946798 + RMER16-int LTR ERVK 1826 2861 -2545 2 1055 423 0 0 0 chr4 61683322 61683369 -93946751 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1055 11164 169 53 36 chr4 61683369 61684679 -93945441 + RMER16-int LTR ERVK 2862 4173 -1233 2 1055 275 179 0 35 chr4 61684746 61684804 -93945316 + ETnERV2-int LTR ERVK 6156 6211 -1195 2 1055 721 287 20 110 chr4 61685334 61685653 -93944467 + RLTR9A LTR ERVK 43 349 -34 2 1055 4290 66 22 0 chr4 61685653 61686201 -93943919 + LTRIS2 LTR ERV1 5 564 0 2 1055 721 283 7 107 chr4 61686201 61686236 -93943884 + RLTR9A LTR ERVK 334 363 -5 2 1055 4668 154 8 9 chr4 61686380 61687797 -93942323 - L1VL4 LINE L1 -1892 1667 254 2 1055 436 338 215 25 chr4 61687851 61688209 -93941911 - MER90a LTR ERV1 -177 437 12 2 1055 336 119 0 0 chr4 61691604 61691663 -93938457 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1055 2269 44 73 24 chr4 61693030 61693358 -93936762 - IAPLTR2_Mm LTR ERVK -131 344 1 2 1055 867 219 66 5 chr4 61693580 61693777 -93936343 + B3 SINE B2 1 209 -7 2 1055 624 297 90 38 chr4 61693967 61694334 -93935786 - MLT1B LTR MaLR 0 390 5 2 1055 902 214 9 52 chr4 61694519 61694751 -93935369 + URR1A DNA MER1_type 4 225 -1 2 1055 883 279 83 67 chr4 61694928 61695274 -93934846 - MTD LTR MaLR -20 399 12 2 1055 182 128 43 0 chr4 61695316 61695363 -93934757 + A-rich Low_complexity Low_complexity 2 50 0 2 1055 411 241 108 80 chr4 61695881 61696057 -93934063 + B3A SINE B2 2 182 -16 2 1055 252 188 0 0 chr4 61696062 61696131 -93933989 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1055 7669 56 4 0 chr4 61696794 61697804 -93932316 + L1Md_F2 LINE L1 4573 5586 -297 2 1055 8169 41 3 6 chr4 61697804 61698803 -93931317 + L1Md_F2 LINE L1 5587 6582 0 2 1055 405 0 0 0 chr4 61698954 61698999 -93931121 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1055 979 255 5 5 chr4 61699103 61699308 -93930812 + B3 SINE B2 6 210 -6 2 1055 723 207 0 0 chr4 61699352 61699473 -93930647 + B3 SINE B2 1 121 -95 2 1055 629 260 119 99 chr4 61699861 61700029 -93930091 - MT2A LTR ERVL -231 302 245 2 1055 1522 100 4 38 chr4 61700029 61700268 -93929852 + L1_Mus2 LINE L1 6336 6566 0 2 1055 629 288 29 43 chr4 61700268 61700418 -93929702 - MT2A LTR ERVL -289 244 99 2 1055 359 240 57 136 chr4 61700427 61700567 -93929553 - MT2A LTR ERVL -404 129 1 2 1055 583 199 52 0 chr4 61700567 61700703 -93929417 - MERVL_2A-int LTR ERVL 0 5761 5619 2 1055 1732 160 25 6 chr4 61701126 61701453 -93928667 + L1_Mur2 LINE L1 816 1148 -5938 2 1055 3700 149 148 25 chr4 61701442 61702324 -93927796 + L1_Mur2 LINE L1 2501 3491 -2386 2 1055 2889 135 4 0 chr4 61702316 61702789 -93927331 + L1VL4 LINE L1 213 687 -5615 2 1055 391 287 30 0 chr4 61702822 61702923 -93927197 - B4 SINE B4 -187 105 2 2 1055 244 359 25 33 chr4 61703185 61703306 -93926814 - MER90a LTR ERV1 -2 573 454 2 1055 1004 257 55 4 chr4 61703310 61703583 -93926537 + B4A SINE B4 2 288 -4 2 1055 20578 161 48 10 chr4 61703662 61707860 -93922260 - L1_Mus4 LINE L1 -1 6635 2215 2 1055 1399 89 11 0 chr4 61707860 61708051 -93922069 - B2_Mm1t SINE B2 0 193 1 2 1055 20578 188 38 11 chr4 61708051 61709665 -93920455 - L1_Mus4 LINE L1 -3669 2214 613 2 1055 386 326 81 27 chr4 61709779 61710088 -93920032 - MER90a LTR ERV1 -240 374 5 2 1055 453 127 0 0 chr4 61713531 61713610 -93916510 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1055 411 38 0 0 chr4 61715196 61715249 -93914871 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1055 426 317 8 0 chr4 61715585 61715705 -93914415 - B3 SINE B2 0 216 96 2 1055 380 324 66 20 chr4 61715703 61715854 -93914266 + B3 SINE B2 49 206 -10 2 1055 389 318 51 70 chr4 61716243 61716458 -93913662 - MIRb SINE MIR -52 216 4 2 1055 275 250 0 0 chr4 61716680 61716736 -93913384 + CT-rich Low_complexity Low_complexity 1 56 0 2 1055 513 328 29 53 chr4 61716825 61717031 -93913089 - B4A SINE B4 -36 256 56 2 1055 422 317 8 16 chr4 61717002 61717124 -93912996 - B1F1 SINE Alu -28 121 1 2 1055 908 243 20 87 chr4 61717640 61717976 -93912144 + RLTR9A LTR ERVK 71 373 -42 2 1055 231 36 0 0 chr4 61718294 61718322 -93911798 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 2 1055 432 0 0 0 chr4 61718371 61718419 -93911701 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1055 905 154 112 153 chr4 61718419 61718740 -93911380 + RLTR45-int LTR ERVK 2092 2399 -4845 2 1055 1984 175 10 17 chr4 61718738 61719150 -93910970 + RMER16-int LTR ERVK 1783 2191 -5215 2 1055 280 359 0 0 chr4 61719251 61719379 -93910741 + ETnERV-int LTR ERVK 1415 1542 -1772 2 1055 10643 181 48 33 chr4 61719454 61722451 -93907669 + RMER16-int LTR ERVK 1370 4148 -1258 2 1055 2947 59 200 9 chr4 61722455 61722885 -93907235 - RLTR1B LTR ERV1 0 512 1 2 1055 4763 11 0 0 chr4 61722885 61723443 -93906677 - MMERGLN-int LTR ERV1 0 7556 6999 2 1055 922 263 5 0 chr4 61723626 61723835 -93906285 + B3 SINE B2 1 210 -6 2 1055 589 277 0 0 chr4 61723881 61724000 -93906120 + B3 SINE B2 3 121 -95 2 1055 2144 148 41 43 chr4 61724097 61724491 -93905629 - RLTR9D LTR ERVK -10 393 1 2 1055 342 113 69 14 chr4 61724491 61724563 -93905557 - ETnERV2-int LTR ERVK 0 7406 7331 2 1055 902 229 24 14 chr4 61724779 61725213 -93904907 - ETnERV2-int LTR ERVK -984 6422 6036 2 1055 196 50 15 104 chr4 61725213 61725280 -93904840 + T-rich Low_complexity Low_complexity 4 64 0 2 1055 6702 84 2 31 chr4 61725313 61725513 -93904607 - L1Md_F2 LINE L1 -8 6574 6395 2 1055 1516 57 0 20 chr4 61725513 61725710 -93904410 - B2_Mm1a SINE B2 0 193 1 2 1055 31544 80 4 34 chr4 61725710 61732134 -93897986 - L1Md_F2 LINE L1 -188 6394 161 2 1055 11973 138 16 12 chr4 61732134 61734074 -93896046 - ETnERV2-int LTR ERVK -1378 6028 4083 2 1055 1119 102 0 0 chr4 61734094 61734241 -93895879 + B1_Mus1 SINE Alu 2 148 0 2 131 5680 252 16 17 chr4 61734359 61736042 -93894078 - ETnERV2-int LTR ERVK -1658 1656 3 2 1056 2279 139 41 18 chr4 61736053 61736106 -93894014 - RLTR9D LTR ERVK -6 397 345 2 1056 531 0 0 0 chr4 61736106 61736165 -93893955 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1056 2279 139 41 18 chr4 61736165 61736499 -93893621 - RLTR9D LTR ERVK -59 344 3 2 1056 235 325 12 35 chr4 61736529 61736615 -93893505 - BC1_Mm scRNA scRNA -63 89 6 2 1056 935 221 193 125 chr4 61736817 61737009 -93893111 - MT2A LTR ERVL 0 533 263 2 1056 2243 113 3 3 chr4 61737009 61737338 -93892782 + L1_Mus2 LINE L1 6233 6561 -5 2 1056 935 221 193 125 chr4 61737338 61737642 -93892478 - MT2A LTR ERVL -271 262 3 2 1056 386 206 76 0 chr4 61737664 61737756 -93892364 - MERVL_2A-int LTR ERVL -42 5719 5621 2 1056 836 164 95 9 chr4 61737756 61737966 -93892154 - MERVL_2A-int LTR ERVL -71 5690 5463 2 1056 1706 166 25 6 chr4 61738179 61738506 -93891614 + L1_Mur2 LINE L1 816 1148 -5938 2 1056 3601 167 149 18 chr4 61738495 61739372 -93890748 + L1_Mur2 LINE L1 2501 3492 -2385 2 1056 2198 126 0 63 chr4 61739380 61739542 -93890578 + L1VL4 LINE L1 223 384 -5918 2 1056 1033 116 7 0 chr4 61739542 61739689 -93890431 + B1_Mus1 SINE Alu 1 148 0 2 1056 2198 126 0 63 chr4 61739689 61739908 -93890212 + L1VL4 LINE L1 385 580 -5722 2 1056 769 272 6 0 chr4 61739908 61740077 -93890043 - B4A SINE B4 -5 287 118 2 1056 592 156 0 5 chr4 61740078 61740194 -93889926 + L1VL4 LINE L1 842 953 -5566 2 1056 361 330 10 0 chr4 61740217 61740320 -93889800 - B4 SINE B4 -187 105 2 2 1056 265 297 29 38 chr4 61740587 61740692 -93889428 - MER90a LTR ERV1 -18 596 493 2 1056 1034 279 25 4 chr4 61740696 61740977 -93889143 + B4A SINE B4 2 288 -4 2 1056 6233 146 22 3 chr4 61741056 61742741 -93887379 - L1_Mus4 LINE L1 -1 6635 4915 2 1056 3675 138 22 1 chr4 61742743 61743425 -93886695 - MusHAL1 LINE L1 -750 1962 1267 2 1056 277 42 0 41 chr4 61743799 61743848 -93886272 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 2 1056 732 23 0 0 chr4 61746842 61746928 -93883192 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1056 401 299 19 0 chr4 61748731 61748838 -93881282 - B3 SINE B2 0 216 108 2 1056 573 309 60 0 chr4 61748839 61749007 -93881113 + B3 SINE B2 39 216 0 2 1056 461 311 35 66 chr4 61749398 61749612 -93880508 - MIRb SINE MIR -52 216 6 2 1056 447 137 0 0 chr4 61749833 61749906 -93880214 + (TCC)n Simple_repeat Simple_repeat 2 74 0 2 1056 509 338 31 44 chr4 61749971 61750197 -93879923 - B4A SINE B4 -14 278 56 2 1056 399 302 16 25 chr4 61750168 61750290 -93879830 - B1F1 SINE Alu -28 121 1 2 1056 928 238 22 94 chr4 61750868 61751188 -93878932 + RLTR9A LTR ERVK 72 368 0 2 1056 942 117 7 0 chr4 61751485 61751630 -93878490 + B1_Mus1 SINE Alu 2 147 -1 2 1056 681 182 0 0 chr4 61751645 61751788 -93878332 + A-rich Low_complexity Low_complexity 1 143 0 2 1056 7974 8 0 0 chr4 61751788 61752752 -93877368 - L1_Mm LINE L1 -3199 2684 1721 2 1056 6599 16 0 0 chr4 61752765 61753508 -93876612 + L1Md_A LINE L1 5828 6570 -12 2 1056 533 29 0 28 chr4 61753512 61753584 -93876536 + (GAAAA)n Simple_repeat Simple_repeat 1 70 0 3 1056 37 0 0 0 chr4 61753614 61753651 -93876469 + AT_rich Low_complexity Low_complexity 1 37 0 3 1056 501 17 0 0 chr4 61753704 61753762 -93876358 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1056 4939 162 39 50 chr4 61753762 61754892 -93875228 + RMER16-int LTR ERVK 1075 2191 -5215 3 1056 450 0 0 0 chr4 61754978 61755028 -93875092 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1056 282 147 0 0 chr4 61755166 61755234 -93874886 + (T)n Simple_repeat Simple_repeat 1 68 0 3 1056 10948 177 57 38 chr4 61755243 61757015 -93873105 + RMER16-int LTR ERVK 1566 3918 -3488 3 1056 429 70 0 0 chr4 61757015 61757072 -93873048 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1056 10948 163 64 32 chr4 61757072 61758360 -93871760 + RMER16-int LTR ERVK 2862 4172 -1234 3 1056 254 306 35 35 chr4 61758611 61758726 -93871394 + ETnERV2-int LTR ERVK 6306 6420 -986 3 1056 252 208 27 27 chr4 61758943 61759017 -93871103 + ETnERV2-int LTR ERVK 7331 7404 -2 3 1056 893 239 14 107 chr4 61759085 61759375 -93870745 + RLTR9A LTR ERVK 104 366 -2 3 1056 2529 63 39 0 chr4 61759421 61759754 -93870366 + ORR1A0 LTR MaLR 1 346 0 3 1056 788 245 66 5 chr4 61760291 61760488 -93869632 + B3 SINE B2 1 209 -7 3 1056 949 287 58 23 chr4 61760678 61761039 -93869081 - MLT1B LTR MaLR 0 390 7 3 1056 806 224 25 68 chr4 61761226 61761461 -93868659 + URR1A DNA MER1_type 1 225 -1 3 1056 934 276 159 51 chr4 61761632 61761983 -93868137 - MTD LTR MaLR -7 400 12 3 1056 2119 99 6 9 chr4 61762419 61762736 -93867384 - IAPLTR2b LTR ERVK -11 316 1 3 1056 340 323 87 47 chr4 61762925 61763097 -93867023 + B3A SINE B2 2 180 -18 3 1056 387 113 0 0 chr4 61763098 61763169 -93866951 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1056 21 36 0 0 chr4 61763505 61763533 -93866587 + AT_rich Low_complexity Low_complexity 1 28 0 3 1056 1610 30 0 0 chr4 61763846 61764044 -93866076 - L1Md_T LINE L1 -461 6121 5924 3 1056 4141 44 0 0 chr4 61764044 61764544 -93865576 + L1Md_A LINE L1 6083 6582 0 3 1056 1102 210 5 0 chr4 61764786 61764991 -93865129 + B3 SINE B2 5 210 -6 3 1056 578 267 0 0 chr4 61765036 61765156 -93864964 + B3 SINE B2 2 121 -95 3 1056 455 72 0 54 chr4 61765239 61765313 -93864807 + RMER16-int LTR ERVK 4102 4171 -1235 3 1056 3846 71 87 2 chr4 61765313 61765833 -93864287 - LTRIS2 LTR ERV1 0 564 1 3 1056 797 240 40 13 chr4 61765834 61766062 -93864058 - MuRRS4-int LTR ERV1 -42 5021 4788 3 1056 5960 177 48 38 chr4 61766053 61769197 -93860923 - MuRRS4-int LTR ERV1 -792 4271 760 3 1056 4527 129 15 15 chr4 61769188 61769930 -93860190 - RMER16-int LTR ERVK -3962 1444 703 3 1056 407 274 11 62 chr4 61769912 61770091 -93860029 - MuRRS4-int LTR ERV1 -7005 551 382 3 1056 3986 58 87 2 chr4 61770556 61771076 -93859044 - LTRIS2 LTR ERV1 0 564 1 3 1056 781 296 179 16 chr4 61771314 61771633 -93858487 - MTD LTR MaLR -25 394 24 3 1056 413 269 89 48 chr4 61772259 61772427 -93857693 + B3A SINE B2 2 176 -22 3 1056 546 140 0 0 chr4 61772435 61772549 -93857571 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 1056 465 150 0 0 chr4 61772601 61772701 -93857419 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 1056 318 111 0 0 chr4 61772703 61772748 -93857372 + HAL1-3A_ME LINE L1 1974 2018 -840 3 1056 935 244 24 0 chr4 61773690 61773895 -93856225 + B3 SINE B2 1 210 -6 3 1056 637 242 0 0 chr4 61773939 61774059 -93856061 + B3 SINE B2 2 121 -95 3 1056 2163 165 40 38 chr4 61774149 61774545 -93855575 - RLTR9D LTR ERVK -6 397 1 3 1056 367 127 14 14 chr4 61774551 61774623 -93855497 - ETnERV2-int LTR ERVK -4 7402 7331 3 1056 13460 155 9 6 chr4 61774838 61777228 -93852892 - ETnERV2-int LTR ERVK -1179 6227 1660 3 1056 1083 102 0 0 chr4 61777235 61777382 -93852738 + B1_Mus1 SINE Alu 2 148 0 3 1056 3982 292 35 47 chr4 61777382 61779754 -93850366 - ETnERV2-int LTR ERVK -2868 3299 1080 3 1056 6537 60 2 0 chr4 61779755 61780561 -93849559 - L1Md_F2 LINE L1 -12 6570 5763 3 1056 1023 252 30 37 chr4 61780561 61781024 -93849096 - ETnERV2-int LTR ERVK -2786 528 3 3 1056 1874 164 29 45 chr4 61781033 61781409 -93848711 - RLTR9D LTR ERVK -33 370 1 3 1056 664 248 206 118 chr4 61781720 61781912 -93848208 - MT2A LTR ERVL 0 533 251 3 1056 2194 118 6 3 chr4 61781912 61782245 -93847875 + L1_Mus2 LINE L1 6233 6566 0 3 1056 664 248 206 118 chr4 61782245 61782542 -93847578 - MT2A LTR ERVL -283 250 2 3 1056 854 164 59 192 chr4 61782548 61782887 -93847233 - MERVL_2A-int LTR ERVL -5 5756 5463 3 1056 1679 175 73 33 chr4 61783029 61783424 -93846696 + L1_Mur2 LINE L1 740 1150 -5936 3 1056 3953 154 161 24 chr4 61783411 61784283 -93845837 + L1_Mur2 LINE L1 2501 3491 -2386 3 1056 1116 134 0 0 chr4 61784275 61784447 -93845673 + L1VL4 LINE L1 213 384 -5918 3 1056 1087 66 0 0 chr4 61784447 61784583 -93845537 + B1_Mus1 SINE Alu 1 136 -12 3 1056 4701 157 16 1 chr4 61784944 61785644 -93844476 - ETnERV2-int LTR ERVK -204 7202 6493 3 1056 275 312 62 21 chr4 61785660 61785804 -93844316 - RNERVK23-int LTR ERVK -371 7846 7697 3 1056 3084 28 2 112 chr4 61785810 61786248 -93843872 - RLTR10 LTR ERVK 0 390 1 3 1056 9028 17 0 0 chr4 61786250 61787245 -93842875 - RLTR10-int LTR ERVK -3 1984 990 3 1056 332 256 62 39 chr4 61787327 61787457 -93842663 - RLTR10-int LTR ERVK -5987 1594 1462 3 1056 8212 37 2 2 chr4 61787521 61788479 -93841641 - RLTR10-int LTR ERVK -989 998 41 3 1056 2999 28 2 145 chr4 61788489 61788944 -93841176 - RLTR10 LTR ERVK 0 390 1 3 1056 987 265 35 11 chr4 61788944 61789226 -93840894 - RNERVK23-int LTR ERVK -518 7699 7411 3 1056 736 288 68 105 chr4 61789226 61789544 -93840576 - MuRRS4-int LTR ERV1 -231 4832 4357 3 1056 448 257 7 42 chr4 61790225 61790367 -93839753 - RNERVK23-int LTR ERVK -1886 6331 6195 3 1056 4235 317 68 50 chr4 61790796 61794180 -93835940 - RNERVK23-int LTR ERVK -2477 5740 2298 3 1056 1730 126 86 3 chr4 61795260 61795562 -93834558 + IAPEY3_LTR LTR ERVK 1 327 -5 3 1056 53054 96 14 2 chr4 61795567 61802747 -93827373 + IAPEY3-int LTR ERVK 3 7263 -417 3 1056 1537 183 28 43 chr4 61802775 61803100 -93827020 + IAPEY3-int LTR ERVK 7345 7664 -16 3 1056 1857 131 85 3 chr4 61803135 61803441 -93826679 + IAPEY3_LTR LTR ERVK 1 331 -1 3 1056 336 129 226 0 chr4 61804230 61804292 -93825828 - ETnERV2-int LTR ERVK -261 7145 7070 3 1056 2052 131 35 3 chr4 61804301 61804615 -93825505 + L1VL4 LINE L1 371 694 -5608 3 1056 335 282 12 0 chr4 61804659 61804744 -93825376 - B4 SINE B4 -205 87 2 3 1056 1023 283 25 4 chr4 61805120 61805400 -93824720 + B4A SINE B4 2 287 -5 3 1056 12959 151 26 3 chr4 61805463 61808620 -93821500 - L1_Mus4 LINE L1 -1 6635 3406 3 1056 624 94 0 0 chr4 61810228 61810334 -93819786 + (GA)n Simple_repeat Simple_repeat 2 107 0 3 1056 326 318 28 0 chr4 61812252 61812359 -93817761 - B3 SINE B2 0 216 107 3 1056 507 298 43 12 chr4 61812359 61812522 -93817598 + B3 SINE B2 39 206 -10 3 1056 657 145 26 0 chr4 61812592 61812709 -93817411 + ORR1A2 LTR MaLR 122 241 -86 3 1056 660 108 10 0 chr4 61812709 61812811 -93817309 - MYSERV6-int LTR ERVK -4865 4094 3992 3 1056 33736 107 13 13 chr4 61812811 61814884 -93815236 + L1Md_F3 LINE L1 242 2310 -3573 3 1056 2881 15 0 0 chr4 61814884 61815208 -93814912 - L1Md_A LINE L1 0 6582 6259 3 1056 33736 60 8 5 chr4 61815208 61818468 -93811652 + L1Md_F3 LINE L1 2311 5586 -297 3 1056 8146 47 2 0 chr4 61818469 61819450 -93810670 + L1Md_F3 LINE L1 5588 6570 -14 3 1056 324 315 64 73 chr4 61819844 61820057 -93810063 - MIRb SINE MIR -52 216 4 3 1056 600 134 0 0 chr4 61820280 61820377 -93809743 + (TCC)n Simple_repeat Simple_repeat 2 98 0 3 1056 407 335 34 34 chr4 61820448 61820652 -93809468 - B4A SINE B4 -14 278 75 3 1056 180 0 0 0 chr4 61820653 61820673 -93809447 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1056 1188 35 0 7 chr4 61820673 61820817 -93809303 - B1_Mm SINE Alu 0 147 5 3 1056 38861 44 1 3 chr4 61820845 61827266 -93802854 - L1Md_T LINE L1 0 6585 84 3 1056 4501 162 25 16 chr4 61827266 61828118 -93802002 + ETnERV2-int LTR ERVK 1333 2191 -5215 3 1056 1015 265 9 100 chr4 61828224 61828709 -93801411 + RLTR45-int LTR ERVK 3197 3498 -3746 3 1056 603 234 412 0 chr4 61828795 61829006 -93801114 + L1Md_F2 LINE L1 335 632 -5987 3 1056 266 125 0 0 chr4 61829007 61829047 -93801073 + L1Md_F2 LINE L1 593 632 -5987 3 1056 37078 49 5 1 chr4 61829045 61834180 -93795940 + L1Md_F2 LINE L1 792 6037 -548 3 1056 3214 72 17 2 chr4 61834172 61834588 -93795532 + L1Md_F2 LINE L1 6164 6585 0 3 1056 2539 80 15 0 chr4 61834565 61834901 -93795219 + L1_Mus1 LINE L1 5933 6273 -294 3 1056 875 224 66 5 chr4 61835384 61835581 -93794539 + B3 SINE B2 1 209 -7 3 1056 788 301 85 22 chr4 61835772 61836135 -93793985 - MLT1B LTR MaLR 0 390 5 3 1056 871 219 25 68 chr4 61836316 61836551 -93793569 + URR1A DNA MER1_type 1 225 -1 3 1056 810 259 186 21 chr4 61836734 61837061 -93793059 - MTC LTR MaLR -28 393 13 3 1056 288 53 0 0 chr4 61837104 61837142 -93792978 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1056 311 287 91 48 chr4 61837673 61837838 -93792282 + B3A SINE B2 3 174 -24 3 1056 957 248 9 0 chr4 61838715 61838925 -93791195 + B3 SINE B2 5 216 0 3 1056 605 195 8 48 chr4 61838942 61838977 -93791143 + B3 SINE B2 1 34 -182 3 1056 3020 104 65 4 chr4 61838977 61839441 -93790679 + L1_Mus3 LINE L1 6147 6638 0 3 1056 605 195 8 48 chr4 61839441 61839529 -93790591 + B3 SINE B2 35 119 -97 3 1056 2498 133 15 6 chr4 61839659 61840259 -93789861 + Lx5 LINE L1 5450 5975 -1075 3 1056 422 217 36 48 chr4 61840259 61840424 -93789696 - RLTR43A LTR ERVK 0 364 202 3 1056 3036 163 111 14 chr4 61840611 61841244 -93788876 + Lx5 LINE L1 5970 6663 -387 3 1056 2831 257 213 4 chr4 61841232 61842036 -93788084 + RMER1A Other Other 59 1030 0 3 1056 3757 145 30 8 chr4 61842041 61842686 -93787434 + MurERV4-int LTR ERVK 3329 3987 -1273 3 1056 194 0 39 0 chr4 61842691 61842717 -93787403 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1056 990 92 0 19 chr4 61842719 61842875 -93787245 - B2_Mm2 SINE B2 -41 154 2 3 1056 5244 143 102 8 chr4 61842876 61843810 -93786310 + MurERV4-int LTR ERVK 3971 4999 -261 3 1056 3459 25 10 0 chr4 61843810 61844202 -93785918 + MTA_Mm LTR MaLR 1 396 0 3 1056 5244 147 17 10 chr4 61844202 61844467 -93785653 + MurERV4-int LTR ERVK 5000 5260 0 3 1056 2159 174 61 18 chr4 61844467 61844912 -93785208 + RMER4A LTR ERVK 1 464 -2 3 1056 5669 166 33 9 chr4 61844923 61845880 -93784240 - MERVL_2A-int LTR ERVL -1883 3878 2899 3 1056 4447 140 81 65 chr4 61845875 61846452 -93783668 - MERVL_2A-int LTR ERVL -4022 1739 1182 3 1056 531 29 0 0 chr4 61846452 61846521 -93783599 - L1Md_F3 LINE L1 -15 6569 6501 3 1056 4447 140 81 65 chr4 61846521 61846862 -93783258 - MERVL_2A-int LTR ERVL -4580 1181 807 3 1056 417 123 0 0 chr4 61846978 61847043 -93783077 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1056 994 196 74 110 chr4 61847043 61847467 -93782653 - MT2A LTR ERVL -63 538 1 3 1056 23 0 0 0 chr4 61847514 61847537 -93782583 + AT_rich Low_complexity Low_complexity 1 23 0 3 1056 275 221 104 13 chr4 61848026 61848163 -93781957 - L1M2 LINE L1 -2451 3692 3545 3 1056 1210 179 3 134 chr4 61848625 61848916 -93781204 + ORR1A4 LTR MaLR 1 253 -76 3 1056 3134 189 42 35 chr4 61848916 61849085 -93781035 - RLTR17 LTR ERVK 0 692 534 3 1056 2570 85 53 0 chr4 61849085 61849426 -93780694 + RLTR10D LTR ERVK 1 359 0 3 1056 3134 189 42 35 chr4 61849426 61849943 -93780177 - RLTR17 LTR ERVK -159 533 1 3 1056 454 176 0 0 chr4 61849943 61850024 -93780096 + ORR1A4 LTR MaLR 314 394 0 3 1056 928 230 112 8 chr4 61850082 61850332 -93779788 + MTD LTR MaLR 144 419 0 3 1056 645 155 0 189 chr4 61851180 61851339 -93778781 + B1_Mur1 SINE Alu 21 149 0 3 1056 705 103 0 0 chr4 61851573 61851690 -93778430 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 1056 679 359 20 16 chr4 61851690 61851942 -93778178 - B4 SINE B4 -34 258 6 3 1056 510 266 32 32 chr4 61852212 61853229 -93776891 - MMSAT4 Satellite Satellite -24 1017 1 3 1056 456 258 0 20 chr4 61854056 61854155 -93775965 + B1F1 SINE Alu 2 98 -51 4 1056 547 257 0 0 chr4 61855081 61855190 -93774930 + PB1D9 SINE Alu 12 120 0 4 1056 206 120 25 74 chr4 61855191 61855272 -93774848 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 1056 2010 162 24 28 chr4 61855584 61855971 -93774149 + RLTR31_Mm LTR ERVK 1 389 -172 4 1056 1977 108 168 3 chr4 61855971 61856287 -93773833 + RLTR9A LTR ERVK 1 368 0 4 1056 2010 162 24 28 chr4 61856287 61856325 -93773795 + RLTR31_Mm LTR ERVK 390 424 -137 4 1056 357 24 0 0 chr4 61856599 61856641 -93773479 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 4 1056 3340 145 58 83 chr4 61856692 61857466 -93772654 + ETnERV2-int LTR ERVK 1056 1810 -5596 4 1056 1326 193 4 23 chr4 61857463 61857728 -93772392 + ETnERV2-int LTR ERVK 2940 3199 -4045 4 1056 7487 192 44 62 chr4 61857829 61859737 -93770383 + ETnERV2-int LTR ERVK 1415 3921 -3485 4 1056 467 171 0 9 chr4 61859734 61859843 -93770277 + ETnERV2-int LTR ERVK 3489 3562 -1844 4 1056 4123 178 38 85 chr4 61859829 61860159 -93769961 + RMER16-int LTR ERVK 2854 3177 -2229 4 1056 1638 37 5 0 chr4 61860159 61860350 -93769770 + B2_Mm1t SINE B2 2 193 0 4 1056 4123 178 38 85 chr4 61860350 61860795 -93769325 + RMER16-int LTR ERVK 3178 3592 -1814 4 1056 1240 88 65 16 chr4 61860795 61860980 -93769140 + B2_Mm2 SINE B2 2 195 0 4 1056 4123 187 35 79 chr4 61860980 61861299 -93768821 + RMER16-int LTR ERVK 3593 3866 -1540 4 1056 1829 214 123 36 chr4 61861299 61861873 -93768247 + RLTR1 LTR ERV1 1 624 0 4 1056 560 293 34 108 chr4 61861873 61862252 -93767868 + ETnERV2-int LTR ERVK 6075 6425 -981 4 1056 281 200 48 48 chr4 61862441 61862525 -93767595 + ETnERV2-int LTR ERVK 7321 7404 -2 4 1056 2238 95 95 3 chr4 61862526 61862863 -93767257 + RLTR9A LTR ERVK 1 368 0 4 1056 770 197 156 6 chr4 61862896 61863075 -93767045 + RLTR17 LTR ERVK 487 692 0 4 1056 780 311 47 7 chr4 61863083 61863358 -93766762 - B4A SINE B4 -6 286 1 4 1056 216 179 0 0 chr4 61863542 61863581 -93766539 + T-rich Low_complexity Low_complexity 2 40 0 4 1056 686 231 0 20 chr4 61863581 61863731 -93766389 - B1_Mur3 SINE Alu 0 149 3 4 1056 474 196 144 65 chr4 61864361 61864514 -93765606 - ORR1D2 LTR MaLR -1 369 205 4 1056 448 106 72 31 chr4 61864522 61864619 -93765501 - ORR1D2 LTR MaLR -269 101 1 4 1056 251 47 70 0 chr4 61865317 61865360 -93764760 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1056 235 297 108 0 chr4 61865412 61865486 -93764634 - ID4_ SINE ID 0 83 2 4 1056 288 154 0 0 chr4 61865908 61865960 -93764160 + (CCA)n Simple_repeat Simple_repeat 1 52 0 4 1057 273 356 7 13 chr4 61866046 61866197 -93763923 - MurSatRep1 Unknown Unknown -1388 749 600 4 1057 181 395 26 52 chr4 61866693 61866808 -93763312 + L2 LINE L2 451 562 -2857 4 1057 696 295 68 46 chr4 61866894 61867217 -93762903 - MER68 LTR ERVL -31 532 203 4 1057 357 290 119 48 chr4 61867321 61867531 -93762589 + L2 LINE L2 2689 2913 -506 4 1057 21 0 0 0 chr4 61867718 61867739 -93762381 + AT_rich Low_complexity Low_complexity 1 21 0 4 1057 186 43 0 0 chr4 61867742 61867765 -93762355 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1057 1159 45 19 0 chr4 61867765 61867921 -93762199 - B2_Mm2 SINE B2 -14 181 23 4 1057 304 22 44 0 chr4 61868117 61868162 -93761958 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1057 674 136 132 9 chr4 61868169 61868333 -93761787 + B3 SINE B2 3 190 -5 4 1057 336 276 111 8 chr4 61870294 61870411 -93759709 + B1_Mur4 SINE Alu 22 150 0 4 1057 244 297 56 56 chr4 61870471 61870596 -93759524 - RSINE1 SINE B4 -36 129 5 4 1057 301 203 14 55 chr4 61870638 61870711 -93759409 - BC1_Mm scRNA scRNA -82 70 1 4 1057 237 65 0 0 chr4 61870742 61870773 -93759347 + (CCCCCG)n Simple_repeat Simple_repeat 3 33 0 4 1057 1306 118 42 5 chr4 61870822 61871034 -93759086 - RLTR14 LTR ERV1 -5 377 158 4 1057 365 282 70 43 chr4 61871116 61871301 -93758819 - RMER4A LTR ERVK -38 428 239 4 1057 422 220 88 0 chr4 61871317 61871408 -93758712 - MYSERV6-int LTR ERVK -1489 5061 4963 4 1057 426 263 180 10 chr4 61871472 61871672 -93758448 + RLTR12B LTR ERVK 38 271 -257 4 1057 189 107 0 0 chr4 61871674 61871702 -93758418 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1057 255 267 41 103 chr4 61871926 61872072 -93758048 - MYSERV16_I-int LTR ERVK -1902 424 288 4 1057 11415 231 31 33 chr4 61872207 61873281 -93756839 - MYSERV6-int LTR ERVK -4350 4609 3547 4 1057 1982 166 158 5 chr4 61873281 61873462 -93756658 - BGLII_B LTR ERVK 0 441 257 4 1057 552 42 0 0 chr4 61873462 61873533 -93756587 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1057 1982 166 158 5 chr4 61873533 61873732 -93756388 - BGLII_B LTR ERVK -185 256 3 4 1057 11415 231 31 33 chr4 61873732 61875633 -93754487 - MYSERV6-int LTR ERVK -5413 3546 1641 4 1057 2108 113 0 3 chr4 61875634 61875954 -93754166 + ORR1A2 LTR MaLR 1 319 -8 4 1057 1069 305 59 32 chr4 61876128 61876690 -93753430 - MYSERV6-int LTR ERVK -7551 1408 832 4 1057 1966 89 97 11 chr4 61876690 61877099 -93753021 - LTRIS3 LTR ERV1 -98 414 4 4 1057 1273 193 29 35 chr4 61877099 61877389 -93752731 + RLTR19B LTR ERVK 425 712 -3 4 1057 3675 107 38 16 chr4 61877588 61878140 -93751980 + LTRIS2 LTR ERV1 1 564 0 4 1057 1935 138 58 22 chr4 61878913 61879276 -93750844 + ORR1B1 LTR MaLR 5 380 -14 4 1057 216 0 0 0 chr4 61879276 61879300 -93750820 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1057 2296 102 34 153 chr4 61879304 61879780 -93750340 - BGLII LTR ERVK -2 419 1 4 1057 187 0 88 29 chr4 61879943 61879977 -93750143 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1057 544 279 77 16 chr4 61880238 61880420 -93749700 + B3A SINE B2 2 194 -4 4 1057 1118 95 0 0 chr4 61880428 61880575 -93749545 + B1_Mus1 SINE Alu 2 148 0 4 1057 881 162 65 0 chr4 61880692 61880846 -93749274 + B2_Mm2 SINE B2 1 164 -31 4 1057 352 241 246 29 chr4 61880873 61881044 -93749076 - B3 SINE B2 -8 208 1 4 1057 26 50 0 0 chr4 61881212 61881252 -93748868 + AT_rich Low_complexity Low_complexity 1 40 0 4 1057 273 54 0 0 chr4 61881336 61881362 -93748758 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1057 1246 34 0 0 chr4 61881362 61881509 -93748611 + B1_Mus1 SINE Alu 2 148 0 4 1057 273 54 0 0 chr4 61881509 61881519 -93748601 + (A)n Simple_repeat Simple_repeat 1 10 0 4 1057 388 339 18 0 chr4 61882885 61883050 -93747070 - B4A SINE B4 -75 217 50 4 1057 392 288 66 117 chr4 61884040 61884166 -93745954 + MLT1A0 LTR MaLR 16 116 -249 4 1057 525 58 0 0 chr4 61884166 61884235 -93745885 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1057 392 288 66 117 chr4 61884235 61884458 -93745662 + MLT1A0 LTR MaLR 117 347 -18 4 1057 849 151 0 0 chr4 61886675 61886827 -93743293 + GA-rich Low_complexity Low_complexity 3 154 0 4 1057 362 57 19 0 chr4 61887596 61887649 -93742471 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 4 1057 493 266 47 140 chr4 61888032 61888246 -93741874 - ID_B1 SINE B4 -68 224 31 4 1057 1157 88 0 0 chr4 61890249 61890396 -93739724 + B1_Mm SINE Alu 1 147 0 4 1057 229 68 22 22 chr4 61890396 61890441 -93739679 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 1057 462 213 203 17 chr4 61890564 61890713 -93739407 + B3 SINE B2 2 177 -39 4 1057 506 79 13 0 chr4 61890713 61890789 -93739331 + (CATA)n Simple_repeat Simple_repeat 1 77 0 4 1057 462 213 203 17 chr4 61890789 61890816 -93739304 + B3 SINE B2 178 210 -6 4 1057 1142 82 0 0 chr4 61890863 61891009 -93739111 + B1_Mus2 SINE Alu 2 147 0 4 1057 501 328 57 0 chr4 61891096 61891273 -93738847 - B3 SINE B2 -19 197 11 4 1057 686 154 101 14 chr4 61891803 61891941 -93738179 + MTC LTR MaLR 261 410 -11 4 1057 559 268 50 153 chr4 61893352 61893594 -93736526 + ID_B1 SINE B4 31 247 -45 4 1057 362 57 19 0 chr4 61893949 61894002 -93736118 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 4 1057 849 151 0 0 chr4 61894771 61894923 -93735197 + CT-rich Low_complexity Low_complexity 3 154 0 4 1057 520 291 66 117 chr4 61897140 61897363 -93732757 - MLT1A0 LTR MaLR -18 347 113 4 1057 471 63 0 0 chr4 61897363 61897426 -93732694 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1057 520 291 66 117 chr4 61897426 61897552 -93732568 - MLT1A0 LTR MaLR -253 112 16 4 1057 446 332 31 5 chr4 61898545 61898739 -93731381 + B4A SINE B4 50 248 -44 4 1057 263 324 28 0 chr4 61900277 61900348 -93729772 + PB1D7 SINE Alu 14 86 -34 4 1057 1483 63 26 0 chr4 61900740 61900929 -93729191 + B2_Mm2 SINE B2 2 195 0 4 1057 2215 111 9 20 chr4 61901738 61902087 -93728033 + RLTR9E LTR ERVK 65 409 0 4 1057 27660 84 12 8 chr4 61902282 61905332 -93724788 - L1_Mus2 LINE L1 -1 6565 3479 4 1057 363 89 0 0 chr4 61905332 61905388 -93724732 + (TTGG)n Simple_repeat Simple_repeat 4 59 0 4 1057 27660 97 12 10 chr4 61905388 61907024 -93723096 - L1_Mus2 LINE L1 -2405 3478 1866 4 1057 655 83 0 0 chr4 61907024 61907120 -93723000 - L1_Mus2 LINE L1 -5437 1179 1084 4 1057 806 111 175 0 chr4 61907130 61907256 -93722864 - B1_Mus1 SINE Alu 0 148 1 4 1057 198 214 48 0 chr4 61907300 61907342 -93722778 - MIR SINE MIR -58 204 161 4 1057 180 281 16 95 chr4 61907312 61907375 -93722745 - L3 LINE CR1 -2740 1749 1692 4 1057 241 118 19 19 chr4 61908327 61908379 -93721741 + GA-rich Low_complexity Low_complexity 1 52 0 4 1057 276 229 47 24 chr4 61909137 61909222 -93720898 + L1ME1 LINE L1 5861 5947 -232 4 1057 1018 197 88 0 chr4 61909936 61910129 -93719991 + B3 SINE B2 1 210 -6 4 1057 695 250 0 0 chr4 61910188 61910328 -93719792 - B1F SINE Alu -9 140 1 4 1057 1839 203 27 16 chr4 61910439 61910805 -93719315 + RLTR40 LTR ERVK 1 370 -447 4 1057 506 237 44 167 chr4 61910812 61911040 -93719080 - RMER12 LTR ERVK -2 1320 1121 4 1057 497 247 102 37 chr4 61911104 61911277 -93718843 - RMER12 LTR ERVK -92 1230 1066 4 1057 675 126 0 0 chr4 61911500 61911627 -93718493 + (TG)n Simple_repeat Simple_repeat 1 127 0 4 1057 444 222 0 0 chr4 61912335 61912515 -93717605 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1057 450 0 0 0 chr4 61913374 61913424 -93716696 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1057 507 243 7 81 chr4 61913999 61914147 -93715973 + B1F2 SINE Alu 13 149 0 4 1057 474 318 11 58 chr4 61914781 61914971 -93715149 - ORR1E LTR MaLR -170 189 9 4 1057 227 252 158 15 chr4 61915117 61915250 -93714870 - L1MD LINE L1 -1451 4695 4544 4 1057 995 260 54 57 chr4 61915641 61916012 -93714108 + ORR1D2 LTR MaLR 1 370 0 4 1057 30 0 0 0 chr4 61916056 61916086 -93714034 + GC_rich Low_complexity Low_complexity 1 30 0 4 1057 791 265 92 0 chr4 61916143 61916339 -93713781 + B3 SINE B2 2 215 -1 5 1057 194 0 0 37 chr4 61916962 61916989 -93713131 + (GTTTG)n Simple_repeat Simple_repeat 1 26 0 5 1057 528 305 0 7 chr4 61917009 61917151 -93712969 - B1F SINE Alu -8 141 1 5 1057 682 201 86 29 chr4 61917460 61917634 -93712486 - B2_Mm2 SINE B2 -9 186 3 5 1057 270 196 36 0 chr4 61918427 61918483 -93711637 + ORR1E LTR MaLR 3 60 -299 5 1057 1261 20 7 0 chr4 61918820 61918966 -93711154 + B1_Mus2 SINE Alu 1 147 0 5 1057 1324 257 79 8 chr4 61920480 61920833 -93709287 + MTEa LTR MaLR 1 378 -1 5 1057 236 238 110 24 chr4 61920995 61921077 -93709043 + MTEb LTR MaLR 273 361 -18 5 1057 2219 168 27 3 chr4 61921356 61921726 -93708394 - ORR1C2 LTR MaLR 0 384 6 5 1057 607 279 114 16 chr4 61922249 61922442 -93707678 + B3 SINE B2 5 216 0 5 1057 218 206 16 0 chr4 61922450 61922513 -93707607 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1057 594 214 120 15 chr4 61922517 61922650 -93707470 + B1_Mur1 SINE Alu 1 147 -2 5 1057 1694 26 0 0 chr4 61922911 61923101 -93707019 - B2_Mm1a SINE B2 -2 191 2 5 1057 1219 112 141 10 chr4 61923825 61924023 -93706097 + URR1A DNA MER1_type 1 224 -2 5 1057 180 0 0 0 chr4 61924579 61924599 -93705521 + (GCTG)n Simple_repeat Simple_repeat 2 21 0 5 1057 195 129 0 0 chr4 61924835 61924866 -93705254 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1057 2059 113 23 0 chr4 61924872 61925181 -93704939 + Lx2 LINE L1 6668 6983 -14 5 1057 390 318 18 9 chr4 61925225 61925336 -93704784 + MER33 DNA MER1_type 17 128 -196 5 1057 952 28 0 0 chr4 61925347 61925454 -93704666 + U6 snRNA snRNA 1 107 0 5 1057 3814 25 0 5 chr4 61925454 61925891 -93704229 + L1Md_F2 LINE L1 6140 6574 -8 5 1057 214 186 0 23 chr4 61926028 61926072 -93704048 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1057 623 291 76 68 chr4 61926083 61926334 -93703786 - B4A SINE B4 -10 282 30 5 1057 254 253 68 57 chr4 61926331 61926419 -93703701 + MER33 DNA MER1_type 234 322 -2 5 1057 213 290 175 29 chr4 61927138 61927241 -93702879 - MIR SINE MIR -100 162 45 5 1057 4762 49 21 2 chr4 61927268 61927844 -93702276 - LTRIS_Mus LTR ERV1 0 587 1 5 1057 1997 183 24 0 chr4 61927914 61928286 -93701834 + RLTR14 LTR ERV1 1 381 -1 5 1057 263 177 48 0 chr4 61928610 61928672 -93701448 - MIR SINE MIR -116 146 82 5 1057 32110 44 1 2 chr4 61929005 61933671 -93696449 - L1Md_F3 LINE L1 -1 6583 1924 5 1057 1950 196 54 7 chr4 61933664 61934090 -93696030 - L1Md_A LINE L1 -6071 653 208 5 1057 864 74 0 0 chr4 61934172 61934280 -93695840 - MT2C_Mm LTR ERVL -78 397 290 5 1057 689 241 5 76 chr4 61934288 61934499 -93695621 - B3A SINE B2 -1 197 2 5 1057 333 109 0 0 chr4 61934613 61934668 -93695452 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1057 336 287 181 0 chr4 61934798 61934892 -93695228 + ID_B1 SINE B4 96 206 -18 5 1057 201 147 0 0 chr4 61934910 61934944 -93695176 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1057 32 43 0 0 chr4 61934969 61935015 -93695105 + AT_rich Low_complexity Low_complexity 1 46 0 5 1057 772 243 54 5 chr4 61935520 61935706 -93694414 + B3A SINE B2 2 196 -2 5 1057 789 162 7 34 chr4 61935871 61936018 -93694102 + B1_Mus2 SINE Alu 5 147 0 5 1057 481 282 15 8 chr4 61936051 61936183 -93693937 + ID_B1 SINE B4 84 216 -8 5 1057 833 183 161 0 chr4 61937165 61937351 -93692769 + B3 SINE B2 1 216 0 5 1057 473 319 37 69 chr4 61937984 61938230 -93691890 + B4A SINE B4 33 270 -22 5 1057 396 91 0 0 chr4 61938230 61938296 -93691824 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1057 261 0 0 0 chr4 61938297 61938326 -93691794 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1057 780 183 84 7 chr4 61938334 61938517 -93691603 + B3A SINE B2 1 195 0 5 1057 459 0 0 0 chr4 61938517 61938568 -93691552 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 5 1057 204 40 0 0 chr4 61939579 61939604 -93690516 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1057 224 245 0 36 chr4 61939641 61939679 -93690441 + polypurine Low_complexity Low_complexity 4 41 0 5 1057 459 0 0 0 chr4 61939679 61939730 -93690390 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 5 1057 224 245 0 36 chr4 61939730 61939746 -93690374 + polypurine Low_complexity Low_complexity 42 56 0 5 1057 1025 57 24 35 chr4 61940067 61940409 -93689711 + (CA)n Simple_repeat Simple_repeat 1 337 0 5 1057 344 222 0 27 chr4 61940540 61940614 -93689506 - MADE2 DNA Mariner -3 77 6 5 1057 1127 301 74 5 chr4 61941091 61941521 -93688599 + L1MB2 LINE L1 5691 6150 -21 5 1057 509 88 29 10 chr4 61941521 61941624 -93688496 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1057 617 253 96 48 chr4 61941654 61941924 -93688196 - B4A SINE B4 -9 283 1 5 1057 593 264 36 30 chr4 61942011 61942179 -93687941 - B3A SINE B2 -29 169 1 5 1057 334 272 48 19 chr4 61942188 61942293 -93687827 - PB1D10 SINE Alu 0 117 10 5 1057 698 277 18 6 chr4 61942214 61942381 -93687739 - ID_B1 SINE B4 -53 171 3 5 1057 278 368 40 17 chr4 61942775 61942952 -93687168 + MLT1D LTR MaLR 7 187 -440 5 1057 319 272 103 8 chr4 61943267 61943393 -93686727 + RMER15 LTR ERVL 348 485 -90 5 1057 342 330 55 87 chr4 61943446 61943755 -93686365 + MLT1D LTR MaLR 207 505 0 5 1057 366 345 50 54 chr4 61946311 61946532 -93683588 - MIRb SINE MIR -9 259 40 5 1057 333 0 0 0 chr4 61946738 61946775 -93683345 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1057 478 276 101 6 chr4 61946840 61947008 -93683112 + MLT1A0 LTR MaLR 180 363 -2 5 1057 243 0 0 0 chr4 61947976 61948003 -93682117 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1057 212 0 0 35 chr4 61949033 61949062 -93681058 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1057 209 0 97 0 chr4 61950071 61950102 -93680018 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1057 213 290 182 20 chr4 61950214 61950362 -93679758 - MIRm SINE MIR -98 178 7 5 1057 559 314 88 10 chr4 61950944 61951137 -93678983 + ID_B1 SINE B4 17 224 0 5 1057 645 220 38 118 chr4 61951140 61951351 -93678769 + B3A SINE B2 3 196 -2 5 1057 377 210 256 0 chr4 61951356 61951454 -93678666 + B1_Mur2 SINE Alu 2 132 -17 5 1057 282 95 0 0 chr4 61951454 61951496 -93678624 + (CCCCCT)n Simple_repeat Simple_repeat 6 47 0 5 1057 203 305 34 0 chr4 61951606 61951665 -93678455 + MIR SINE MIR 37 97 -111 5 1057 244 139 0 0 chr4 61951680 61951716 -93678404 + MIR SINE MIR 17 52 -210 5 1057 503 269 27 41 chr4 61952112 61952158 -93677962 - B1F SINE Alu 0 149 105 5 1057 1702 151 160 3 chr4 61952158 61952333 -93677787 - ORR1C2 LTR MaLR 0 384 177 5 1057 258 32 0 0 chr4 61952333 61952364 -93677756 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1057 1702 151 160 3 chr4 61952364 61952520 -93677600 - ORR1C2 LTR MaLR -208 176 2 5 1057 503 269 27 41 chr4 61952520 61952620 -93677500 - B1F SINE Alu -45 104 5 5 1057 351 0 0 0 chr4 61953043 61953082 -93677038 + (TTA)n Simple_repeat Simple_repeat 2 40 0 5 1057 225 244 0 0 chr4 61953105 61953146 -93676974 - tRNA-Ala-GCA tRNA tRNA -18 57 17 5 1057 452 301 111 25 chr4 61954707 61954976 -93675144 - MLT1G1 LTR MaLR -66 423 177 5 1057 734 263 136 0 chr4 61954977 61955220 -93674900 + B4A SINE B4 1 276 -16 5 1057 2515 147 50 0 chr4 61955220 61955643 -93674477 - RMER6B LTR ERVK -3 458 15 5 1057 210 246 0 50 chr4 61955646 61955706 -93674414 + (CATA)n Simple_repeat Simple_repeat 4 60 0 5 1057 235 324 133 18 chr4 61955710 61955823 -93674297 - MLT1G1 LTR MaLR -392 203 78 5 1057 235 310 0 0 chr4 61956016 61956074 -93674046 - ID4 SINE ID 0 83 26 5 1057 454 317 25 11 chr4 61956093 61956234 -93673886 - B1F SINE Alu -8 141 1 5 1057 644 295 52 5 chr4 61956289 61956483 -93673637 - B4 SINE B4 -3 289 87 5 1057 336 228 17 9 chr4 61956494 61956609 -93673511 + CT-rich Low_complexity Low_complexity 3 118 0 5 1057 316 183 100 0 chr4 61956613 61956673 -93673447 - B1_Mus2 SINE Alu -80 67 2 5 1057 246 239 84 56 chr4 61956673 61956684 -93673436 - B4 SINE B4 -140 152 80 5 1057 474 263 109 9 chr4 61956684 61956895 -93673225 - L1MA6 LINE L1 -5 6295 6064 5 1057 299 301 43 0 chr4 61957607 61957700 -93672420 - MIRb SINE MIR -82 186 90 5 1057 263 302 0 23 chr4 61957797 61957885 -93672235 + L4 LINE RTE 1744 1829 -200 5 1057 255 271 70 54 chr4 61959144 61959157 -93670963 + B4 SINE B4 76 90 -202 5 1057 588 197 32 8 chr4 61959157 61959280 -93670840 + B1F SINE Alu 1 126 -23 5 1057 315 0 0 0 chr4 61959281 61959316 -93670804 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1057 192 253 157 22 chr4 61959974 61960063 -93670057 - MIR SINE MIR -52 210 110 5 1057 376 216 32 0 chr4 61960245 61960328 -93669792 - BC1_Mm scRNA scRNA -62 90 2 5 1057 418 264 81 16 chr4 61960372 61960495 -93669625 + MIRb SINE MIR 26 156 -112 5 1057 808 201 138 11 chr4 61960496 61960677 -93669443 + B3 SINE B2 9 212 -4 5 1057 272 246 30 15 chr4 61960761 61960827 -93669293 - MIRb SINE MIR -104 164 98 5 1057 279 0 0 0 chr4 61961135 61961166 -93668954 + (CCCTG)n Simple_repeat Simple_repeat 5 35 0 5 1057 192 77 0 0 chr4 61961959 61961985 -93668135 + (CAT)n Simple_repeat Simple_repeat 3 28 0 5 1057 184 380 107 24 chr4 61964598 61964803 -93665317 + L2b LINE L2 2760 2981 -438 5 1057 199 336 102 74 chr4 61964827 61965152 -93664968 + L2b LINE L2 3042 3375 0 5 1057 297 128 0 0 chr4 61965865 61965912 -93664208 + (TCC)n Simple_repeat Simple_repeat 3 49 0 5 1057 216 0 0 0 chr4 61967740 61967764 -93662356 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1057 604 204 242 7 chr4 61968252 61968405 -93661715 - B4A SINE B4 -69 223 35 6 1057 433 304 229 4 chr4 61969533 61969758 -93660362 + B4A SINE B4 1 276 -16 6 1057 486 0 0 0 chr4 61969801 61969855 -93660265 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1057 3567 18 2 0 chr4 61970000 61970395 -93659725 - MTA_Mm LTR MaLR 0 396 1 6 1057 9105 37 5 3 chr4 61970395 61971491 -93658629 - MTA_Mm-int LTR MaLR 0 1098 1 6 1057 3567 18 2 0 chr4 61971491 61971886 -93658234 - MTA_Mm LTR MaLR 0 396 1 6 1057 851 265 0 0 chr4 61971965 61972117 -93658003 + B3A SINE B2 2 153 -45 6 1057 291 54 0 0 chr4 61972117 61972154 -93657966 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1057 851 265 0 0 chr4 61972154 61972186 -93657934 + B3A SINE B2 154 185 -13 6 1057 584 286 15 0 chr4 61972222 61972355 -93657765 - B1_Mur1 SINE Alu 0 149 15 6 1057 670 205 48 24 chr4 61972363 61972488 -93657632 - B1_Mur1 SINE Alu -15 134 7 6 1057 21 0 0 0 chr4 61972520 61972541 -93657579 + AT_rich Low_complexity Low_complexity 1 21 0 6 1057 640 133 148 0 chr4 61972700 61972828 -93657292 + B1_Mur2 SINE Alu 2 148 -1 6 1057 2540 108 81 45 chr4 61973959 61974404 -93655716 + RMER6B LTR ERVK 1 461 0 6 1057 380 287 14 0 chr4 61975642 61975663 -93654457 + ID SINE ID 65 82 -142 6 1057 499 225 26 18 chr4 61975663 61975776 -93654344 + PB1D10 SINE Alu 1 114 -3 6 1057 728 274 45 0 chr4 61976294 61976451 -93653669 + RSINE1 SINE B4 2 165 0 6 1057 366 291 13 0 chr4 61977334 61977413 -93652707 + ID SINE ID 1 80 -144 6 1057 1629 173 163 6 chr4 61977586 61977924 -93652196 + ORR1B1 LTR MaLR 1 391 -3 6 1057 408 321 28 0 chr4 61978180 61978289 -93651831 - PB1D10 SINE Alu -5 112 1 6 1057 247 250 0 0 chr4 61978382 61978442 -93651678 + L1ME4a LINE L1 5988 6047 -77 6 1057 788 157 15 0 chr4 61979041 61979175 -93650945 + B1_Mur1 SINE Alu 13 148 -1 6 1057 413 296 34 34 chr4 61979194 61979341 -93650779 + B1F1 SINE Alu 3 149 0 6 1057 268 368 53 0 chr4 61979609 61979704 -93650416 + MER58A DNA MER1_type 2 101 -123 6 1057 1043 236 182 34 chr4 61980266 61980376 -93649744 - ORR1D1 LTR MaLR 0 374 227 6 1057 405 0 0 0 chr4 61980376 61980421 -93649699 + (CAGG)n Simple_repeat Simple_repeat 4 48 0 6 1057 1043 236 182 34 chr4 61980421 61980634 -93649486 - ORR1D1 LTR MaLR -148 226 3 6 1057 458 357 0 14 chr4 61981018 61981163 -93648957 - ID_B1 SINE B4 -2 222 80 6 1057 585 273 65 0 chr4 61981174 61981313 -93648807 - B1_Mur1 SINE Alu 0 149 2 6 1057 561 210 65 7 chr4 61981314 61981453 -93648667 - B1F SINE Alu -2 147 1 6 1057 370 242 38 38 chr4 61981661 61981781 -93648339 - PB1D9 SINE Alu 0 120 1 6 1057 759 238 88 6 chr4 61982209 61982391 -93647729 + B3 SINE B2 1 197 -19 6 1057 477 266 8 34 chr4 61983389 61983506 -93646614 + MTEa LTR MaLR 197 310 -69 6 1057 524 234 252 28 chr4 61983776 61984066 -93646054 + ORR1E LTR MaLR 3 357 -2 6 1057 21 57 0 0 chr4 61984620 61984655 -93645465 + AT_rich Low_complexity Low_complexity 1 35 0 6 1057 763 204 180 11 chr4 61984672 61984855 -93645265 - B3 SINE B2 0 216 3 6 1057 382 305 74 74 chr4 61984939 61985102 -93645018 - RSINE1 SINE B4 0 165 3 6 1057 222 361 101 0 chr4 61985557 61985676 -93644444 - L2b LINE L2 -31 3344 3214 6 1057 330 281 146 0 chr4 61985688 61985784 -93644336 + PB1D10 SINE Alu 1 110 -7 6 1057 255 254 0 27 chr4 61986491 61986564 -93643556 + L1MB8 LINE L1 6034 6104 -74 6 1057 435 272 186 61 chr4 61986589 61986836 -93643284 + B4A SINE B4 5 282 -10 6 1057 308 222 79 0 chr4 61986913 61986976 -93643144 + L1MB8 LINE L1 6109 6176 -2 6 1057 750 186 21 21 chr4 61987746 61987903 -93642217 - ID_B1 SINE B4 -2 222 73 6 1057 221 218 38 179 chr4 61988006 61988112 -93642008 + MIR SINE MIR 172 262 0 6 1057 197 257 40 67 chr4 61988380 61988455 -93641665 - MIRb SINE MIR -28 240 168 6 1057 675 137 116 51 chr4 61988640 61988728 -93641392 + B1_Mur1 SINE Alu 2 100 -49 6 1057 258 56 0 0 chr4 61988728 61988764 -93641356 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1057 675 137 116 51 chr4 61988764 61988813 -93641307 + B1_Mur1 SINE Alu 101 148 -1 6 1057 25 0 0 0 chr4 61988814 61988839 -93641281 + AT_rich Low_complexity Low_complexity 1 25 0 6 1057 1428 246 108 55 chr4 61989000 61989354 -93640766 - RMER5 LTR ERV1 0 534 140 6 1057 2390 127 38 114 chr4 61989354 61989852 -93640268 + RMER6B LTR ERVK 1 460 -1 6 1057 1428 246 108 55 chr4 61989852 61990004 -93640116 - RMER5 LTR ERV1 -395 139 1 6 1057 579 218 34 27 chr4 61990867 61991013 -93639107 - B1_Mur3 SINE Alu -2 147 1 6 1057 54 73 0 0 chr4 61991445 61991555 -93638565 + AT_rich Low_complexity Low_complexity 1 110 0 6 1057 21 57 0 0 chr4 61991845 61991880 -93638240 + AT_rich Low_complexity Low_complexity 1 35 0 6 1057 811 288 95 0 chr4 61991990 61992254 -93637866 - B4A SINE B4 -2 290 2 6 1057 1224 42 7 0 chr4 61992391 61992535 -93637585 + B1_Mus2 SINE Alu 2 146 -1 6 1057 374 276 59 17 chr4 61992644 61992762 -93637358 + PB1 SINE Alu 3 125 -2 6 1057 231 196 0 0 chr4 61992794 61992840 -93637280 + B3 SINE B2 169 214 -2 6 1057 249 175 0 0 chr4 61992935 61992975 -93637145 - MER70B LTR ERVL -186 392 353 6 1057 251 314 23 92 chr4 61994473 61994603 -93635517 - MIRb SINE MIR -111 157 37 6 1057 3578 18 2 0 chr4 61995424 61995819 -93634301 + MTA_Mm LTR MaLR 1 396 0 6 1057 342 20 0 58 chr4 61996102 61996154 -93633966 + B1_Mm SINE Alu 99 147 0 6 1057 301 331 18 79 chr4 61996247 61996411 -93633709 - HAL1-3A_ME LINE L1 -421 2437 2284 6 1057 973 188 0 0 chr4 61996411 61996560 -93633560 - B1_Mur2 SINE Alu 0 149 1 6 132 698 252 7 0 chr4 61996957 61997092 -93633028 - B1_Mur1 SINE Alu -13 136 1 6 1058 189 0 0 0 chr4 61997191 61997212 -93632908 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1058 369 258 34 0 chr4 61997259 61997348 -93632772 - B4 SINE B4 -180 112 21 6 1058 189 0 0 0 chr4 61998176 61998197 -93631923 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1058 298 312 97 21 chr4 61998404 61998548 -93631572 - MIRc SINE MIR -27 241 87 6 1058 656 152 19 0 chr4 61998583 61998688 -93631432 - PB1D9 SINE Alu -7 113 7 6 1058 1645 32 0 0 chr4 61998769 61998959 -93631161 + B2_Mm1a SINE B2 2 191 -2 6 1058 247 0 0 0 chr4 61998960 61998997 -93631123 + L1Md_T LINE L1 6546 6582 0 6 1058 624 207 7 97 chr4 61999050 61999205 -93630915 + B1_Mur1 SINE Alu 1 141 -8 6 1058 450 335 19 13 chr4 61999842 61999999 -93630121 + MIR SINE MIR 33 190 -72 6 1058 234 276 45 22 chr4 62000057 62000146 -93629974 - MLT1A0 LTR MaLR -268 97 7 1 1058 790 289 73 27 chr4 62000276 62000536 -93629584 - B4 SINE B4 -2 290 19 2 1058 336 289 88 0 chr4 62000731 62000845 -93629275 - B4A SINE B4 -1 291 168 3 1058 896 171 20 0 chr4 62000850 62000996 -93629124 - B1_Mur3 SINE Alu 0 149 1 4 1058 231 353 86 29 chr4 62001990 62002095 -93628025 + PB1D10 SINE Alu 2 112 -5 5 1058 725 300 83 16 chr4 62002149 62002591 -93627529 - L1ME3 LINE L1 -38 6124 5656 6 1058 348 311 115 34 chr4 62002775 62003028 -93627092 + L1MB4 LINE L1 5843 6115 -65 7 1058 1061 211 9 18 chr4 62003028 62003245 -93626875 + B3 SINE B2 2 216 0 8 1058 348 296 89 96 chr4 62003245 62003305 -93626815 + L1MB4 LINE L1 6104 6155 -28 7 1058 597 219 79 129 chr4 62003364 62003605 -93626515 + MER2 DNA MER2_type 115 343 -2 9 1058 22 35 0 0 chr4 62003789 62003818 -93626302 + AT_rich Low_complexity Low_complexity 1 29 0 1 1058 649 230 78 29 chr4 62003980 62004186 -93625934 + B3 SINE B2 1 216 0 1 1058 473 328 95 16 chr4 62004202 62004391 -93625729 - L1MEg2 LINE L1 -5660 792 589 1 1058 228 35 0 0 chr4 62004730 62004759 -93625361 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1058 421 155 117 24 chr4 62004806 62004905 -93625215 - B1F2 SINE Alu -6 143 32 1 1058 1230 184 0 32 chr4 62004930 62005149 -93624971 - B3 SINE B2 -4 212 1 1 1058 876 234 8 123 chr4 62005154 62005398 -93624722 - B3 SINE B2 0 216 1 1 1058 267 293 119 37 chr4 62005553 62005822 -93624298 + L1MC5 LINE L1 7510 7800 -161 1 1058 530 252 0 8 chr4 62006749 62006869 -93623251 - PB1D9 SINE Alu 0 120 2 1 1058 1633 244 82 35 chr4 62007541 62008051 -93622069 + RMER5 LTR ERV1 1 534 0 1 1058 1150 76 0 0 chr4 62008129 62008274 -93621846 + B1_Mus1 SINE Alu 4 148 0 2 1058 381 265 50 10 chr4 62008343 62008442 -93621678 - PB1D10 SINE Alu -12 105 3 2 1058 435 277 0 0 chr4 62010115 62010209 -93619911 + RSINE1 SINE B4 72 165 0 2 1058 636 165 90 8 chr4 62010266 62010388 -93619732 - B1_Mur3 SINE Alu -13 136 5 2 1058 404 273 34 0 chr4 62010741 62010855 -93619265 + B1F2 SINE Alu 2 120 0 2 1058 238 294 145 40 chr4 62011233 62011357 -93618763 + MER21B LTR ERV1 100 236 -627 2 1058 979 319 74 51 chr4 62011523 62011673 -93618447 + MER21B LTR ERV1 363 501 -362 2 1058 1363 105 5 0 chr4 62011673 62011864 -93618256 + B2_Mm1a SINE B2 1 192 -1 2 1058 979 319 74 51 chr4 62011864 62012146 -93617974 + MER21B LTR ERV1 502 805 -58 2 1058 197 312 165 26 chr4 62012399 62012514 -93617606 + MIRb SINE MIR 9 139 -129 2 1058 1360 225 63 6 chr4 62012865 62012910 -93617210 - MTEa LTR MaLR -10 369 324 2 1058 1140 124 0 0 chr4 62012910 62013088 -93617032 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 2 1058 1360 225 63 6 chr4 62013088 62013391 -93616729 - MTEa LTR MaLR -56 323 3 2 1058 215 324 14 35 chr4 62013765 62013909 -93616211 + L2 LINE L2 2618 2758 -661 3 1058 247 274 11 35 chr4 62013926 62013943 -93616177 - ID_B1 SINE B4 -131 93 9 3 1058 295 246 0 14 chr4 62013943 62014013 -93616107 - ID4 SINE ID -6 77 9 3 1058 311 274 135 10 chr4 62014043 62014139 -93615981 - PB1D10 SINE Alu -9 108 1 3 1058 430 336 7 14 chr4 62014232 62014377 -93615743 + RSINE1 SINE B4 3 146 -19 3 1058 375 192 0 0 chr4 62014401 62014479 -93615641 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1058 1025 80 58 0 chr4 62014511 62014649 -93615471 + B1_Mus2 SINE Alu 2 147 0 3 1058 45 34 0 0 chr4 62014800 62014859 -93615261 + AT_rich Low_complexity Low_complexity 1 59 0 3 1058 720 181 26 53 chr4 62014861 62015013 -93615107 - B1_Mur2 SINE Alu 0 149 2 3 1058 875 206 65 5 chr4 62015017 62015217 -93614903 - B3 SINE B2 -3 213 2 3 1058 7099 122 47 74 chr4 62015876 62016655 -93613465 + RMER12B LTR ERVK 2 802 -602 4 1058 207 0 0 0 chr4 62016655 62016678 -93613442 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1058 7099 122 47 74 chr4 62016678 62017067 -93613053 + RMER12B LTR ERVK 803 1175 -229 4 1058 405 0 0 0 chr4 62017067 62017112 -93613008 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1058 7099 122 47 74 chr4 62017112 62017236 -93612884 + RMER12B LTR ERVK 1176 1251 -153 4 1058 324 0 0 0 chr4 62017236 62017272 -93612848 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1058 7099 122 47 74 chr4 62017272 62017418 -93612702 + RMER12B LTR ERVK 1252 1403 -1 4 1058 646 241 14 0 chr4 62017648 62017789 -93612331 - B1_Mur2 SINE Alu -6 143 1 4 1058 388 271 113 40 chr4 62017903 62018053 -93612067 - RSINE1 SINE B4 -2 163 3 4 1058 265 341 34 0 chr4 62018129 62018217 -93611903 + PB1 SINE Alu 34 124 -3 4 1058 641 217 16 0 chr4 62018225 62018354 -93611766 + B3A SINE B2 1 131 -67 4 1058 759 203 14 0 chr4 62018657 62018800 -93611320 + B1_Mus2 SINE Alu 2 146 -1 4 1058 1023 199 71 0 chr4 62019103 62019299 -93610821 - B3 SINE B2 -5 211 2 4 1058 656 216 50 14 chr4 62019687 62019828 -93610292 + B1_Mur2 SINE Alu 3 148 -1 5 1058 306 0 0 0 chr4 62020167 62020201 -93609919 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1058 518 269 18 48 chr4 62020208 62020376 -93609744 + B4A SINE B4 130 292 0 5 1058 183 259 83 67 chr4 62021974 62022094 -93608026 + MIRc SINE MIR 17 138 -130 5 1058 185 59 0 56 chr4 62022580 62022616 -93607504 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1058 186 43 0 0 chr4 62023425 62023448 -93606672 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1058 616 223 23 8 chr4 62023448 62023579 -93606541 - B1_Mur2 SINE Alu -10 139 7 5 1058 180 175 50 0 chr4 62023726 62023766 -93606354 - MIRc SINE MIR -157 111 70 5 1058 228 111 0 0 chr4 62023860 62023896 -93606224 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1058 1149 61 0 39 chr4 62023896 62024050 -93606070 - B1_Mus1 SINE Alu 0 148 1 5 1058 3172 42 37 10 chr4 62024193 62024600 -93605520 + L1Md_F2 LINE L1 6165 6582 0 6 1058 215 169 160 53 chr4 62024666 62024741 -93605379 + MIR SINE MIR 29 111 -157 6 1058 188 0 74 0 chr4 62025161 62025188 -93604932 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1058 1191 22 0 0 chr4 62025188 62025326 -93604794 - B1_Mus1 SINE Alu -10 138 1 6 1058 323 271 0 0 chr4 62025562 62025632 -93604488 - ID4_ SINE ID -2 81 12 6 1058 258 204 37 0 chr4 62025886 62025940 -93604180 + MER58B DNA MER1_type 180 235 -106 6 1058 22 0 0 0 chr4 62026295 62026317 -93603803 + AT_rich Low_complexity Low_complexity 1 22 0 6 1058 574 177 32 16 chr4 62026421 62026547 -93603573 - B1_Mur2 SINE Alu -1 148 21 6 1058 453 66 0 0 chr4 62026947 62027008 -93603112 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1058 336 149 95 0 chr4 62027801 62027875 -93602245 - PB1D9 SINE Alu 0 120 40 6 1058 380 241 37 0 chr4 62027875 62027983 -93602137 + (CCTG)n Simple_repeat Simple_repeat 3 114 0 7 1058 401 234 13 0 chr4 62028367 62028444 -93601676 + ID_B1 SINE B4 119 196 -28 7 1058 585 217 15 30 chr4 62028481 62028614 -93601506 - RSINE1 SINE B4 -29 136 6 7 1058 197 260 20 0 chr4 62029258 62029308 -93600812 + MIR3 SINE MIR 115 165 -43 7 1058 369 299 103 47 chr4 62029407 62029452 -93600668 - L1MC4a LINE L1 -2016 5866 5822 7 1058 1625 52 0 0 chr4 62029452 62029645 -93600475 - B2_Mm1t SINE B2 0 193 1 7 1058 369 299 103 47 chr4 62029645 62029813 -93600307 - L1MC4a LINE L1 -2061 5821 5641 7 1058 180 0 0 0 chr4 62030809 62030829 -93599291 + (TAA)n Simple_repeat Simple_repeat 3 22 0 7 1058 548 250 7 21 chr4 62030829 62030972 -93599148 - ID_B1 SINE B4 -3 221 81 7 1058 224 206 16 0 chr4 62031470 62031495 -93598625 + T-rich Low_complexity Low_complexity 40 64 0 7 1058 213 65 0 0 chr4 62031495 62031526 -93598594 + (GTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1058 224 206 16 0 chr4 62031526 62031563 -93598557 + T-rich Low_complexity Low_complexity 2 39 0 8 1058 517 225 128 30 chr4 62031563 62031696 -93598424 - B1_Mur1 SINE Alu -2 147 2 8 1058 1405 56 16 27 chr4 62032286 62032471 -93597649 - B2_Mm2 SINE B2 -10 185 3 8 1058 644 144 192 0 chr4 62032499 62032624 -93597496 + B1_Mur4 SINE Alu 2 150 0 8 1058 276 189 0 0 chr4 62032920 62032973 -93597147 + B1F2 SINE Alu 58 110 -39 8 1058 639 297 49 26 chr4 62032983 62033249 -93596871 - RMER5 LTR ERV1 -250 284 13 8 1058 297 193 35 0 chr4 62033444 62033501 -93596619 - MT2B LTR ERVL -368 233 175 8 1058 305 161 161 0 chr4 62033451 62033507 -93596613 - B1_Mus1 SINE Alu -78 70 6 8 1058 215 219 125 111 chr4 62033453 62033525 -93596595 - B4 SINE B4 -140 152 80 8 1058 317 266 18 0 chr4 62033587 62033696 -93596424 - PB1D9 SINE Alu -8 112 2 8 1058 321 227 76 68 chr4 62033811 62033929 -93596191 - PB1D7 SINE Alu -1 119 1 9 1058 252 287 128 10 chr4 62034000 62034102 -93596018 - MIR SINE MIR -81 181 68 9 1058 347 200 247 0 chr4 62034386 62034471 -93595649 - B3 SINE B2 -109 107 2 9 1058 342 0 0 0 chr4 62034480 62034518 -93595602 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 9 1058 415 265 29 0 chr4 62034518 62034620 -93595500 - B1F SINE Alu -9 140 36 9 1058 339 309 82 0 chr4 62035295 62035392 -93594728 + MER20 DNA MER1_type 108 212 -7 9 1058 367 310 49 14 chr4 62036426 62036570 -93593550 - B1F SINE Alu 0 149 1 9 1058 778 234 29 29 chr4 62036570 62036654 -93593466 - ID SINE ID -140 84 1 9 1058 255 79 0 0 chr4 62037590 62037628 -93592492 + (TAA)n Simple_repeat Simple_repeat 3 40 0 9 1058 908 48 184 0 chr4 62037787 62037912 -93592208 + B1_Mus1 SINE Alu 1 148 0 9 1058 315 71 0 0 chr4 62037912 62037954 -93592166 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1058 769 192 13 33 chr4 62038292 62038443 -93591677 - B1_Mur3 SINE Alu 0 149 2 1 1058 1353 101 21 5 chr4 62038651 62038840 -93591280 - B2_Mm2 SINE B2 -3 192 1 1 1058 198 71 0 0 chr4 62039041 62039069 -93591051 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1058 189 0 0 0 chr4 62039090 62039111 -93591009 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 1 1058 699 57 0 2 chr4 62039112 62039218 -93590902 - B1_Mm SINE Alu -6 142 39 1 1058 294 219 58 58 chr4 62039151 62039238 -93590882 - MT2B LTR ERVL -344 257 171 1 1058 267 103 0 0 chr4 62039305 62039344 -93590776 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1058 233 204 19 0 chr4 62040603 62040657 -93589463 - PB1D9 SINE Alu -65 55 1 1 1058 351 0 0 0 chr4 62041009 62041048 -93589072 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1058 323 205 78 135 chr4 62041725 62041866 -93588254 - PB1D10 SINE Alu -1 148 9 1 1058 930 223 18 28 chr4 62043215 62043432 -93586688 + B3 SINE B2 2 216 0 1 1058 726 136 0 0 chr4 62043442 62043560 -93586560 + (TAGA)n Simple_repeat Simple_repeat 1 118 0 1 1058 328 206 55 0 chr4 62043566 62043639 -93586481 - ID2 SINE ID -5 78 2 1 1058 28 29 0 0 chr4 62043687 62043722 -93586398 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 253 237 0 33 chr4 62043756 62043817 -93586303 - ID4 SINE ID -20 63 5 1 1058 398 284 37 0 chr4 62045197 62045306 -93584814 - PB1D10 SINE Alu 0 117 5 1 1058 964 210 10 5 chr4 62045436 62045632 -93584488 + B3 SINE B2 14 210 -6 1 1058 298 220 27 107 chr4 62045671 62045696 -93584424 + ID_B1 SINE B4 122 222 0 1 1058 588 106 0 0 chr4 62045696 62045781 -93584339 + B1_Mus2 SINE Alu 63 147 0 1 1058 23 0 0 0 chr4 62046950 62046973 -93583147 + GC_rich Low_complexity Low_complexity 1 23 0 1 1058 1112 95 0 7 chr4 62047604 62047753 -93582367 - B1_Mus1 SINE Alu 0 148 1 1 1058 310 135 114 26 chr4 62047861 62047940 -93582180 + B1F2 SINE Alu 40 114 -6 1 1058 248 325 54 23 chr4 62047967 62048096 -93582024 - MIRc SINE MIR -125 143 11 1 1058 250 287 287 0 chr4 62048445 62048532 -93581588 + PB1D10 SINE Alu 6 117 0 1 1058 338 310 17 17 chr4 62048688 62048803 -93581317 - PB1D10 SINE Alu -1 116 2 1 1058 232 259 0 18 chr4 62048842 62048897 -93581223 + CT-rich Low_complexity Low_complexity 4 57 0 1 1058 657 191 69 0 chr4 62049372 62049503 -93580617 + ID_B1 SINE B4 82 221 -3 1 1058 228 118 74 56 chr4 62049455 62049509 -93580611 + PB1D10 SINE Alu 63 117 0 1 1058 207 69 0 0 chr4 62050121 62050150 -93579970 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1058 383 247 220 31 chr4 62050623 62050782 -93579338 - MER5A DNA MER1_type 0 189 1 1 1058 332 197 0 40 chr4 62053820 62053894 -93576226 + ID SINE ID 3 73 -151 1 1058 1445 74 11 0 chr4 62054224 62054414 -93575706 + B2_Mm1t SINE B2 2 193 0 1 1058 216 0 0 0 chr4 62055299 62055323 -93574797 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1058 455 172 35 0 chr4 62055329 62055416 -93574704 - PB1D7 SINE Alu -8 112 23 1 1058 23 0 0 0 chr4 62055624 62055647 -93574473 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 181 359 21 21 chr4 62056240 62056334 -93573786 - L2b LINE L2 -95 3280 3187 1 1058 21 0 0 0 chr4 62056585 62056606 -93573514 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 241 325 13 0 chr4 62056616 62056693 -93573427 - ID4_ SINE ID -4 79 2 1 1058 991 104 42 0 chr4 62056804 62056948 -93573172 + B1_Mur4 SINE Alu 1 150 0 1 1058 697 292 64 20 chr4 62056954 62057251 -93572869 - RLTR19-int LTR ERVK -4201 1936 1627 1 1058 890 130 0 64 chr4 62057254 62057410 -93572710 + B1_Mus2 SINE Alu 2 147 0 1 1058 234 81 0 0 chr4 62057410 62057447 -93572673 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1058 305 191 30 45 chr4 62057466 62057532 -93572588 + ID_B1 SINE B4 160 224 0 1 1058 332 156 3 0 chr4 62057480 62057541 -93572579 + B1F SINE Alu 98 149 0 1 1058 295 271 66 94 chr4 62058854 62059132 -93570988 + RSINE1 SINE B4 38 291 -1 1 1058 1194 68 0 0 chr4 62059820 62059967 -93570153 - B1_Mus2 SINE Alu 0 147 1 1 1058 471 267 9 0 chr4 62060007 62060123 -93569997 - PB1D7 SINE Alu 0 120 4 1 1058 229 315 135 0 chr4 62060354 62060443 -93569677 - PB1D7 SINE Alu -19 101 1 1 1058 285 192 162 19 chr4 62060467 62060621 -93569499 - RMER17C LTR ERVK -138 272 97 1 1058 657 224 22 30 chr4 62060630 62060819 -93569301 - B3 SINE B2 -5 190 7 1 1058 1225 41 0 7 chr4 62060920 62061067 -93569053 - B1_Mus2 SINE Alu 0 147 2 1 1058 226 219 0 0 chr4 62061216 62061257 -93568863 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1058 390 159 0 0 chr4 62061784 62061853 -93568267 + T-rich Low_complexity Low_complexity 1 69 0 1 1058 607 123 63 45 chr4 62061853 62061964 -93568156 - B1_Mur3 SINE Alu 0 149 37 1 1058 424 229 210 16 chr4 62062028 62062152 -93567968 + B1F2 SINE Alu 2 149 0 1 1058 225 299 75 0 chr4 62062092 62062159 -93567961 + B4 SINE B4 164 235 -57 1 1058 693 280 56 57 chr4 62062258 62062636 -93567484 + RLTR11B LTR ERVK 1 394 -133 1 1058 210 118 0 0 chr4 62062948 62062982 -93567138 + ID SINE ID 9 42 -182 1 1058 1731 211 234 7 chr4 62062985 62063529 -93566591 + Lx7 LINE L1 6697 7363 -333 1 1058 29 47 0 0 chr4 62063621 62063664 -93566456 + AT_rich Low_complexity Low_complexity 1 43 0 1 1058 331 271 279 19 chr4 62064044 62064198 -93565922 + B3A SINE B2 1 194 -4 1 1058 1326 64 58 6 chr4 62064198 62064371 -93565749 - B2_Mm2 SINE B2 -12 183 2 1 1058 213 65 0 0 chr4 62064441 62064472 -93565648 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 1 1058 321 214 0 0 chr4 62064722 62064792 -93565328 + PB1 SINE Alu 58 127 0 1 1058 464 336 98 84 chr4 62064827 62064918 -93565202 + B4A SINE B4 2 95 -197 1 1058 982 141 0 13 chr4 62064918 62065069 -93565051 + B1_Mur3 SINE Alu 1 149 0 1 1058 464 336 98 84 chr4 62065069 62065263 -93564857 + B4A SINE B4 96 291 -1 1 1058 3625 165 51 16 chr4 62065826 62066468 -93563652 + RMER1B Other Other 391 1055 -11 1 1058 4286 162 45 65 chr4 62066582 62067508 -93562612 + RMER13B LTR ERVK 1 908 0 1 1058 21 0 0 0 chr4 62067585 62067606 -93562514 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 380 161 237 0 chr4 62067645 62067738 -93562382 - RSINE1 SINE B4 -42 123 9 1 1058 990 128 14 0 chr4 62067838 62067986 -93562134 + B1_Mur4 SINE Alu 1 150 0 1 1058 1359 74 23 0 chr4 62067991 62068167 -93561953 + B2_Mm2 SINE B2 2 181 -14 1 1058 216 122 0 0 chr4 62068201 62068242 -93561878 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1058 1400 60 66 0 chr4 62068274 62068457 -93561663 + B2_Mm2 SINE B2 1 195 0 1 1058 317 242 9 133 chr4 62070821 62070926 -93559194 - ID_B1 SINE B4 -132 92 1 1 1058 310 256 13 13 chr4 62071073 62071152 -93558968 + B4 SINE B4 2 80 -212 1 1058 484 164 165 43 chr4 62071492 62071607 -93558513 - B1_Mus2 SINE Alu 0 147 19 1 1058 544 276 75 15 chr4 62072031 62072230 -93557890 - RCHARR1 DNA MER1_type -109 865 655 1 1058 607 256 273 23 chr4 62072317 62072581 -93557539 - RCHARR1 DNA MER1_type -478 496 167 1 1058 638 258 17 77 chr4 62073082 62073263 -93556857 - B3A SINE B2 0 198 29 1 1058 186 43 0 0 chr4 62073267 62073290 -93556830 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1058 1131 57 0 7 chr4 62073290 62073427 -93556693 - B1_Mus2 SINE Alu -5 142 6 1 1058 204 40 0 0 chr4 62073591 62073616 -93556504 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1058 428 193 60 0 chr4 62073637 62073720 -93556400 - RSINE1 SINE B4 -32 133 46 1 1058 181 290 61 61 chr4 62073822 62073936 -93556184 + L2 LINE L2 2674 2787 -632 1 1058 1298 90 6 17 chr4 62074339 62074519 -93555601 - B2_Mm1t SINE B2 -14 179 2 1 1058 336 179 0 0 chr4 62074524 62074580 -93555540 - B1F1 SINE Alu -2 147 92 1 1058 699 231 14 0 chr4 62074598 62074745 -93555375 - B1_Mur1 SINE Alu 0 149 1 1 1058 342 281 29 10 chr4 62074995 62075099 -93555021 + Tigger7 DNA MER2_type 23 128 -2363 1 1058 1175 36 0 0 chr4 62075276 62075413 -93554707 + B1_Mus1 SINE Alu 1 137 -11 1 1058 288 260 27 27 chr4 62075892 62075967 -93554153 + B3 SINE B2 1 75 -141 1 1058 706 220 16 73 chr4 62077847 62078038 -93552082 - B3A SINE B2 -16 182 3 1 1058 394 283 17 17 chr4 62078209 62078324 -93551796 - PB1D10 SINE Alu 0 117 3 1 1058 238 299 14 29 chr4 62078265 62078334 -93551786 - B4A SINE B4 -147 145 78 1 1058 627 299 66 12 chr4 62078403 62078569 -93551551 + B3A SINE B2 2 176 -22 1 1058 730 213 21 0 chr4 62078585 62078726 -93551394 + B1_Mur1 SINE Alu 3 146 -3 1 1058 443 270 0 0 chr4 62080617 62080706 -93549414 + PB1D10 SINE Alu 1 89 -28 1 1058 1079 62 28 7 chr4 62080728 62080873 -93549247 + B1_Mus1 SINE Alu 1 148 0 1 1058 381 155 309 0 chr4 62080892 62080976 -93549144 + B1_Mur4 SINE Alu 1 110 -40 1 1058 27 29 0 0 chr4 62080982 62081016 -93549104 + AT_rich Low_complexity Low_complexity 1 34 0 1 1058 310 272 128 12 chr4 62081089 62081253 -93548867 - L1ME2 LINE L1 -21 6143 5961 1 1058 556 247 42 94 chr4 62081263 62081411 -93548709 - L1ME2 LINE L1 -1245 5813 5666 1 1058 725 172 219 0 chr4 62081411 62081580 -93548540 - B3 SINE B2 -10 206 1 2 1058 556 232 36 116 chr4 62081580 62081689 -93548431 - L1ME2 LINE L1 -753 5691 5605 1 1058 1199 68 0 0 chr4 62081727 62081874 -93548246 + B1_Mus1 SINE Alu 2 148 0 2 1058 307 286 121 0 chr4 62081894 62081985 -93548135 + PB1D10 SINE Alu 1 102 -15 2 1058 222 257 28 28 chr4 62082455 62082527 -93547593 - ID4 SINE ID -11 72 1 2 1058 187 0 0 108 chr4 62082679 62082716 -93547404 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1058 1097 80 0 0 chr4 62082734 62082872 -93547248 + B1_Mus1 SINE Alu 1 138 -10 2 1058 665 180 84 30 chr4 62082886 62083052 -93547068 - B2_Mm2 SINE B2 -18 177 3 2 1058 290 266 169 46 chr4 62084746 62084876 -93545244 - B1_Mm SINE Alu 0 147 2 2 1058 786 124 71 28 chr4 62084966 62085107 -93545013 + B1_Mus1 SINE Alu 2 148 0 2 1058 261 83 0 0 chr4 62085571 62085607 -93544513 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1058 479 260 0 9 chr4 62085811 62085916 -93544204 - PB1D10 SINE Alu -4 113 10 2 1058 230 259 144 127 chr4 62085812 62085993 -93544127 - B4A SINE B4 -72 220 37 2 1058 724 128 94 0 chr4 62086215 62086332 -93543788 - B1_Mus2 SINE Alu -19 128 1 2 1058 288 335 41 65 chr4 62087142 62087311 -93542809 + ORR1E LTR MaLR 84 248 -111 2 1058 202 121 0 29 chr4 62087440 62087474 -93542646 + A-rich Low_complexity Low_complexity 3 35 0 2 1058 28 0 0 0 chr4 62087905 62087933 -93542187 + AT_rich Low_complexity Low_complexity 1 28 0 2 1058 22 0 0 0 chr4 62088041 62088063 -93542057 + AT_rich Low_complexity Low_complexity 1 22 0 2 1058 317 302 17 146 chr4 62091493 62091672 -93538448 - L2b LINE L2 -21 3405 3219 2 1058 356 231 103 0 chr4 62092173 62092296 -93537824 + L1_Mm LINE L1 5320 5489 -870 2 1058 434 244 0 55 chr4 62092325 62092416 -93537704 + RSINE1 SINE B4 36 121 -44 2 1058 668 216 8 16 chr4 62092397 62092524 -93537596 - B3 SINE B2 -87 129 4 2 1058 720 103 0 0 chr4 62092877 62092984 -93537136 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 1058 324 70 0 0 chr4 62093268 62093311 -93536809 + (CTTG)n Simple_repeat Simple_repeat 1 43 0 2 1058 466 176 211 9 chr4 62093311 62093412 -93536708 - B1_Mur2 SINE Alu -13 136 13 2 1058 277 257 0 86 chr4 62093341 62093422 -93536698 - MT2B LTR ERVL -361 240 167 2 1058 439 95 8 6 chr4 62093560 62093669 -93536451 + B2_Mm2 SINE B2 47 190 -5 2 1058 905 178 199 11 chr4 62093679 62093855 -93536265 + B3 SINE B2 1 209 -7 2 1058 781 105 117 151 chr4 62093881 62093922 -93536198 + B2_Mm2 SINE B2 1 41 -154 2 1058 1229 54 0 0 chr4 62093922 62094070 -93536050 + B1_Mus1 SINE Alu 1 148 0 2 1058 781 105 117 151 chr4 62094070 62094207 -93535913 + B2_Mm2 SINE B2 42 173 -22 2 1058 285 250 0 0 chr4 62094207 62094283 -93535837 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 2 1058 617 40 0 0 chr4 62094300 62094374 -93535746 + B2_Mm2 SINE B2 1 74 -121 2 1058 1629 27 0 0 chr4 62094556 62094739 -93535381 + B2_Mm1a SINE B2 1 183 -10 2 1058 27 49 0 0 chr4 62094739 62094780 -93535340 + AT_rich Low_complexity Low_complexity 1 41 0 2 1058 180 283 73 36 chr4 62095346 62095456 -93534664 - MIRb SINE MIR -127 141 28 2 1058 714 82 0 0 chr4 62095927 62096025 -93534095 + (CAGAGA)n Simple_repeat Simple_repeat 3 100 0 2 1058 188 256 47 0 chr4 62096133 62096176 -93533944 + MIR SINE MIR 94 138 -70 2 1058 805 294 94 38 chr4 62096213 62096478 -93533642 + B4A SINE B4 5 284 -8 2 1058 1153 84 0 0 chr4 62096700 62096843 -93533277 - B1_Mus1 SINE Alu -5 143 1 2 1058 2446 73 3 3 chr4 62096854 62097171 -93532949 - L1_Mus2 LINE L1 0 6566 6250 2 1058 288 132 333 27 chr4 62097322 62097430 -93532690 - B2_Mm2 SINE B2 -8 187 47 2 1058 1079 153 17 0 chr4 62097496 62097672 -93532448 - B2_Mm1t SINE B2 -14 179 1 2 1058 249 219 0 0 chr4 62097712 62097785 -93532335 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1058 361 290 68 15 chr4 62098213 62098346 -93531774 - B1F SINE Alu -9 140 1 2 1058 725 45 0 0 chr4 62098514 62098602 -93531518 - BC1_Mm scRNA scRNA -63 89 2 2 1058 844 206 110 11 chr4 62098603 62098785 -93531335 + B3 SINE B2 11 210 -6 2 1058 227 235 148 0 chr4 62099391 62099472 -93530648 + RMER15 LTR ERVL 434 526 -49 2 1058 2413 142 13 18 chr4 62099479 62099865 -93530255 - MTC LTR MaLR -37 384 1 2 1058 259 176 118 0 chr4 62099865 62099916 -93530204 + RMER15 LTR ERVL 519 575 0 2 1058 464 267 81 7 chr4 62100141 62100277 -93529843 - RMER5 LTR ERV1 0 534 389 2 1058 342 0 0 0 chr4 62100293 62100331 -93529789 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1058 694 188 87 0 chr4 62100334 62100472 -93529648 - B3 SINE B2 -66 150 1 2 1058 270 0 0 0 chr4 62100473 62100503 -93529617 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1058 263 250 74 12 chr4 62100719 62100800 -93529320 - RMER5 LTR ERV1 -419 115 30 2 1058 291 181 79 53 chr4 62101164 62101240 -93528880 + RMER10A LTR ERVL 322 399 -43 2 1058 242 273 33 33 chr4 62101798 62101889 -93528231 + MLT-int LTR MaLR 1450 1540 -195 2 1058 238 253 37 74 chr4 62101882 62101963 -93528157 + MLT1A1-int LTR MaLR 1246 1323 -48 2 1058 243 255 83 64 chr4 62102002 62102111 -93528009 + MLT1A1 LTR MaLR 1 111 -297 2 1058 3023 65 39 3 chr4 62102519 62102905 -93527215 - MTB LTR MaLR 0 400 1 2 1058 1220 61 0 7 chr4 62103292 62103441 -93526679 + B1_Mus1 SINE Alu 1 148 0 2 1058 203 167 0 0 chr4 62103444 62103486 -93526634 + A-rich Low_complexity Low_complexity 1 42 0 2 1058 745 250 24 6 chr4 62103528 62103697 -93526423 + B3 SINE B2 45 216 0 2 1058 183 80 0 0 chr4 62103768 62103793 -93526327 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1058 1249 58 6 6 chr4 62103797 62103969 -93526151 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 2 1058 986 123 14 0 chr4 62104001 62104147 -93525973 + B1_Mur4 SINE Alu 1 148 -2 2 1058 485 200 195 25 chr4 62104467 62104585 -93525535 - B1_Mur2 SINE Alu 0 149 12 2 1058 494 232 191 38 chr4 62104611 62104768 -93525352 - B3A SINE B2 -15 183 3 2 1058 3085 12 0 0 chr4 62104842 62105179 -93524941 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1058 10250 25 2 4 chr4 62105179 62106339 -93523781 - IAPEz-int LTR ERVK 0 6481 5325 2 1058 33471 24 24 10 chr4 62106339 62110191 -93519929 - IAPEz-int LTR ERVK -2566 3915 8 2 1058 3085 12 0 0 chr4 62110191 62110528 -93519592 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1058 198 309 168 79 chr4 62110925 62111115 -93519005 + MIRc SINE MIR 23 229 -39 2 1058 450 303 53 16 chr4 62111369 62111557 -93518563 + L1M5 LINE L1 5555 5749 -424 2 1058 318 353 36 7 chr4 62111937 62112074 -93518046 - MIRb SINE MIR -93 183 43 2 1058 1133 61 0 39 chr4 62112601 62112754 -93517366 + B1_Mus1 SINE Alu 2 148 0 2 1058 228 175 140 0 chr4 62112766 62112823 -93517297 - ID_B1 SINE B4 -58 166 102 2 1058 3514 33 0 0 chr4 62112856 62113252 -93516868 + MTA_Mm LTR MaLR 1 396 0 2 1058 342 20 0 0 chr4 62113653 62113704 -93516416 - Lx LINE L1 -3 6651 6601 2 1058 824 189 35 0 chr4 62113725 62113868 -93516252 - B1_Mus1 SINE Alu 0 148 1 2 1058 360 192 0 14 chr4 62113879 62113953 -93516167 - B1_Mur4 SINE Alu 0 150 78 2 1058 226 324 27 0 chr4 62114220 62114294 -93515826 + BC1_Mm scRNA scRNA 2 77 -75 2 1058 346 271 103 41 chr4 62114357 62114519 -93515601 + MIRb SINE MIR 3 178 -98 2 1058 906 87 8 23 chr4 62115457 62115586 -93514534 - B1_Mur4 SINE Alu 0 150 24 2 1058 318 222 17 139 chr4 62115495 62115610 -93514510 - MT2B LTR ERVL -337 264 164 2 1058 1436 70 5 0 chr4 62116330 62116515 -93513605 + B2_Mm1a SINE B2 2 187 -6 2 1058 1505 175 71 45 chr4 62117513 62117824 -93512296 + RMER4A LTR ERVK 147 465 -1 2 1058 273 194 12 163 chr4 62118872 62118958 -93511162 - RSINE1 SINE B4 -85 80 8 2 1058 515 82 11 45 chr4 62118992 62119081 -93511039 - B1_Mus2 SINE Alu 0 147 62 2 1058 190 337 40 20 chr4 62120428 62120528 -93509592 - MIRb SINE MIR -37 231 130 2 1058 406 235 0 0 chr4 62120583 62120664 -93509456 + ID4_ SINE ID 2 82 -1 2 1058 1525 63 0 11 chr4 62120924 62121115 -93509005 + B2_Mm2 SINE B2 1 189 -6 2 1058 222 62 0 0 chr4 62121146 62121178 -93508942 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1058 1332 101 11 0 chr4 62121835 62122024 -93508096 + B2_Mm1t SINE B2 2 192 -1 2 1058 323 249 16 0 chr4 62122082 62122175 -93507945 - L1MB3 LINE L1 -19 6164 6056 2 1058 795 175 134 26 chr4 62122426 62122620 -93507500 - B3 SINE B2 -1 215 1 2 1058 1018 122 0 7 chr4 62122644 62122792 -93507328 + B1_Mus2 SINE Alu 1 147 0 2 1058 189 0 0 0 chr4 62122805 62122826 -93507294 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 1058 253 250 0 0 chr4 62122940 62122988 -93507132 - MLT1A0 LTR MaLR -6 359 312 2 1058 234 298 55 77 chr4 62123384 62123475 -93506645 + MIRc SINE MIR 121 209 -59 2 1058 272 25 0 48 chr4 62123523 62123565 -93506555 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1058 1144 45 0 0 chr4 62123565 62123699 -93506421 - B1_Mus1 SINE Alu -13 135 2 2 1058 342 267 63 89 chr4 62124147 62124319 -93505801 - MIRm SINE MIR -98 178 6 2 1058 237 108 0 0 chr4 62125175 62125212 -93504908 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 2 1058 668 69 57 38 chr4 62125376 62125481 -93504639 + B1_Mus2 SINE Alu 41 147 0 2 1058 267 79 0 0 chr4 62125508 62125546 -93504574 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1058 1010 236 28 49 chr4 62125557 62125842 -93504278 - B4 SINE B4 -11 281 3 2 1058 1482 49 5 11 chr4 62125881 62126066 -93504054 + B2_Mm1a SINE B2 1 184 -9 2 1058 1493 65 11 0 chr4 62126076 62126262 -93503858 - B2_Mm1a SINE B2 -5 188 1 3 1058 256 217 27 80 chr4 62126359 62126434 -93503686 + ID4 SINE ID 2 72 -11 3 1058 441 36 0 0 chr4 62126434 62126489 -93503631 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1058 494 255 37 19 chr4 62126516 62126624 -93503496 + B3 SINE B2 101 210 -6 3 1058 618 202 70 0 chr4 62126722 62126851 -93503269 + B1_Mur3 SINE Alu 1 138 -11 3 1058 207 0 0 0 chr4 62126851 62126874 -93503246 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1058 468 51 0 0 chr4 62126874 62126933 -93503187 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 3 1058 754 293 78 29 chr4 62126955 62127266 -93502854 + L1MB5 LINE L1 5827 6152 -22 3 1058 649 253 19 57 chr4 62127369 62127528 -93502592 - RSINE1 SINE B4 0 165 13 3 1058 211 354 24 24 chr4 62127453 62127537 -93502583 - B2_Mm1t SINE B2 -107 86 3 3 1058 501 264 128 34 chr4 62127758 62127962 -93502158 + Charlie1a DNA MER1_type 1047 1269 -186 3 1058 620 233 8 40 chr4 62127957 62128082 -93502038 - B1_Mur1 SINE Alu -27 122 2 3 1058 293 235 10 133 chr4 62127999 62128097 -93502023 - MT2B LTR ERVL -361 240 155 3 132 540 214 119 0 chr4 62128093 62128219 -93501901 - B1F SINE Alu 0 149 9 3 1059 283 297 107 68 chr4 62128224 62128401 -93501719 + Charlie1a DNA MER1_type 1272 1455 0 3 1059 293 278 14 143 chr4 62128538 62128675 -93501445 + BC1_Mm scRNA scRNA 4 124 -28 3 1059 180 0 0 0 chr4 62128675 62128695 -93501425 + (CCA)n Simple_repeat Simple_repeat 1 20 0 3 1059 197 262 45 15 chr4 62128725 62128791 -93501329 - L2b LINE L2 -219 3156 3089 3 1059 1098 112 37 43 chr4 62129310 62129497 -93500623 - B2_Mm2 SINE B2 -9 186 1 3 1059 368 200 0 28 chr4 62130285 62130357 -93499763 - PB1D10 SINE Alu -1 116 47 3 1059 180 0 0 0 chr4 62130775 62130795 -93499325 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1059 840 162 0 51 chr4 62131158 62131314 -93498806 - B1_Mus1 SINE Alu 0 148 1 3 1059 474 18 0 0 chr4 62132500 62132555 -93497565 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1059 554 186 0 0 chr4 62132615 62132712 -93497408 - B3 SINE B2 -119 97 1 3 1059 248 255 0 0 chr4 62132712 62132755 -93497365 - U6 snRNA snRNA -64 43 1 3 1059 619 118 189 101 chr4 62132863 62133032 -93497088 + B2_Mm2 SINE B2 5 188 -7 3 1059 313 307 104 13 chr4 62133258 62133489 -93496631 + L2b LINE L2 2329 2580 -839 3 1059 4371 113 67 30 chr4 62133502 62134230 -93495890 + RMER6A LTR ERVK 1 755 -1 3 1059 295 319 64 19 chr4 62134359 62134499 -93495621 + MLT1H LTR MaLR 117 262 -317 3 1059 262 233 67 135 chr4 62134876 62134980 -93495140 + MTEb LTR MaLR 1 97 -282 3 1059 345 235 0 0 chr4 62135005 62135073 -93495047 + MTEb LTR MaLR 196 263 -116 3 1059 1512 204 158 35 chr4 62135085 62135451 -93494669 - MTD LTR MaLR -6 413 3 3 1059 413 236 90 0 chr4 62135710 62135799 -93494321 - B1_Mur1 SINE Alu 0 149 53 3 1059 380 321 28 9 chr4 62135825 62135932 -93494188 - PB1D10 SINE Alu -8 109 1 3 1059 776 278 17 0 chr4 62135932 62136010 -93494110 - ID SINE ID -140 84 4 3 1059 492 228 247 17 chr4 62136046 62136220 -93493900 - B3 SINE B2 0 216 3 3 1059 436 323 23 8 chr4 62136700 62136831 -93493289 - B1F SINE Alu -15 134 2 3 1059 269 276 23 114 chr4 62136725 62136856 -93493264 - MT2B LTR ERVL -338 263 145 3 1059 212 331 50 12 chr4 62136881 62136980 -93493140 + L2b LINE L2 3291 3423 -3 3 1059 402 236 37 19 chr4 62137483 62137591 -93492529 - MER57A-int LTR ERV1 -271 5916 5807 3 1059 570 233 120 60 chr4 62138476 62138659 -93491461 - B3A SINE B2 -1 197 4 3 1059 216 158 0 0 chr4 62138677 62138715 -93491405 + T-rich Low_complexity Low_complexity 1 38 0 3 1059 223 359 56 26 chr4 62138791 62138983 -93491137 - MIR SINE MIR -2 266 69 3 1059 550 312 39 0 chr4 62139646 62139774 -93490346 + RSINE1 SINE B4 18 150 -15 3 1059 644 159 18 132 chr4 62139906 62140019 -93490101 - B1_Mur1 SINE Alu -1 148 45 3 1059 1403 86 38 0 chr4 62140019 62140205 -93489915 - B2_Mm2 SINE B2 -1 194 2 3 1059 644 159 18 132 chr4 62140205 62140258 -93489862 - B1_Mur1 SINE Alu -105 44 1 3 1059 254 29 0 28 chr4 62140271 62140307 -93489813 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1059 709 224 19 64 chr4 62140309 62140466 -93489654 - ID_B1 SINE B4 0 224 75 3 1059 1429 103 0 5 chr4 62140728 62140923 -93489197 - B2_Mm2 SINE B2 -1 194 1 3 1059 288 368 0 0 chr4 62141150 62141275 -93488845 + (CCCGAA)n Simple_repeat Simple_repeat 4 128 0 3 1059 181 286 20 39 chr4 62141586 62141637 -93488483 + MIR SINE MIR 14 63 -199 3 1059 212 235 206 0 chr4 62142664 62142732 -93487388 - ID4_ SINE ID 0 83 2 3 1059 229 159 84 113 chr4 62142826 62142897 -93487223 - L1M3de LINE L1 -5733 920 852 3 1059 278 236 44 41 chr4 62142889 62143009 -93487111 + L1M2 LINE L1 5724 5837 -463 3 1059 443 33 0 32 chr4 62143011 62143073 -93487047 + B1_Mus1 SINE Alu 37 96 -52 3 1059 211 361 20 52 chr4 62143184 62143241 -93486879 - L2 LINE L2 -2309 1110 1060 3 1059 935 178 0 0 chr4 62143241 62143387 -93486733 - B1_Mur4 SINE Alu -4 146 1 3 1059 211 361 20 52 chr4 62143387 62143580 -93486540 - L2 LINE L2 -2360 1059 868 3 1059 1114 214 29 0 chr4 62143977 62144187 -93485933 - B3 SINE B2 0 216 1 3 1059 213 39 0 0 chr4 62144265 62144291 -93485829 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 3 1059 1124 93 111 0 chr4 62144291 62144453 -93485667 - B2_Mm2 SINE B2 -15 180 1 3 1059 312 288 0 0 chr4 62144485 62144551 -93485569 - ID4 SINE ID -13 70 5 3 1059 533 224 95 8 chr4 62144572 62144698 -93485422 - ID_B1 SINE B4 -1 223 87 3 1059 356 304 55 23 chr4 62144707 62144880 -93485240 - MIRb SINE MIR -75 193 5 3 1059 606 333 84 63 chr4 62145309 62145576 -93484544 - L2a LINE L2 -8 3418 3157 3 1059 598 245 12 59 chr4 62145576 62145745 -93484375 + RSINE1 SINE B4 3 163 -2 3 1059 426 39 0 0 chr4 62145751 62145803 -93484317 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1059 606 333 84 63 chr4 62145803 62146018 -93484102 - L2a LINE L2 -275 3151 2919 3 1059 437 247 0 0 chr4 62146158 62146239 -93483881 + B3A SINE B2 9 89 -109 3 1059 420 37 0 0 chr4 62146266 62146320 -93483800 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1059 233 254 36 0 chr4 62146733 62146788 -93483332 + MIR SINE MIR 31 87 -121 3 1059 1324 194 103 15 chr4 62147813 62148124 -93481996 + MER31A LTR ERV1 34 366 -119 3 1059 456 35 0 0 chr4 62148124 62148182 -93481938 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1059 1324 194 103 15 chr4 62148182 62148199 -93481921 + MER31A LTR ERV1 367 389 -96 3 1059 229 320 13 13 chr4 62149758 62149834 -93480286 + ID4_ SINE ID 5 80 -3 3 1059 570 252 41 99 chr4 62149969 62150141 -93479979 - RSINE1 SINE B4 0 165 4 3 1059 453 15 30 15 chr4 62150168 62150235 -93479885 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1059 723 220 35 25 chr4 62150271 62150449 -93479671 - B4A SINE B4 -111 181 5 3 1059 207 69 0 0 chr4 62150461 62150490 -93479630 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1059 1251 54 0 0 chr4 62150603 62150750 -93479370 + B1_Mm SINE Alu 1 147 0 3 1059 192 152 0 0 chr4 62150750 62150783 -93479337 + A-rich Low_complexity Low_complexity 1 33 0 3 1059 218 81 27 0 chr4 62150811 62150848 -93479272 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 3 1059 718 228 15 0 chr4 62150851 62150987 -93479133 - B1_Mur1 SINE Alu -7 142 5 3 1059 882 196 184 0 chr4 62151089 62151268 -93478852 - B3 SINE B2 -1 215 4 3 1059 312 178 181 43 chr4 62151348 62151442 -93478678 - PB1D10 SINE Alu 0 117 11 3 1059 615 309 171 44 chr4 62151749 62152385 -93477735 - L1MC4 LINE L1 -128 7914 7198 3 1059 343 296 87 58 chr4 62152386 62152594 -93477526 - L1MC4 LINE L1 -949 7093 6880 3 1059 708 239 159 0 chr4 62152598 62152774 -93477346 + B3 SINE B2 2 205 -11 3 1059 22 0 0 0 chr4 62152786 62152808 -93477312 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 313 200 585 8 chr4 62152808 62152926 -93477194 - B3 SINE B2 -2 214 29 3 1059 313 298 99 27 chr4 62152943 62153167 -93476953 - L1MC4 LINE L1 -1153 6889 6626 3 1059 920 139 28 0 chr4 62153244 62153388 -93476732 + B1_Mur3 SINE Alu 1 148 -1 3 1059 630 191 198 22 chr4 62154457 62154496 -93475624 - B3 SINE B2 0 216 177 3 1059 192 77 0 0 chr4 62154496 62154522 -93475598 + (TATG)n Simple_repeat Simple_repeat 1 26 0 3 1059 630 191 198 22 chr4 62154522 62154664 -93475456 - B3 SINE B2 -40 176 5 3 1059 387 0 0 0 chr4 62154674 62154717 -93475403 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1059 207 0 0 0 chr4 62154717 62154739 -93475381 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1059 282 256 199 70 chr4 62154778 62155034 -93475086 - B4 SINE B4 0 292 4 3 1059 434 279 137 0 chr4 62155333 62155516 -93474604 - B3 SINE B2 -7 209 2 3 1059 258 32 0 0 chr4 62155915 62155946 -93474174 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 3 1059 271 291 10 113 chr4 62156277 62156374 -93473746 + MT2B2 LTR ERVL 153 239 -345 3 1059 479 219 18 37 chr4 62156303 62156412 -93473708 + PB1D10 SINE Alu 11 117 0 3 1059 219 212 29 29 chr4 62156415 62156483 -93473637 - L2b LINE L2 -11 3364 3297 3 1059 231 349 30 44 chr4 62156635 62156770 -93473350 + MIR3 SINE MIR 25 157 -51 3 1059 301 301 140 67 chr4 62156803 62156967 -93473153 - MIRb SINE MIR -39 229 54 3 1059 326 260 13 0 chr4 62158511 62158588 -93471532 + ID4 SINE ID 2 79 -4 3 1059 227 325 35 24 chr4 62158602 62158687 -93471433 - MER102a DNA MER1_type -79 251 166 3 1059 215 209 0 0 chr4 62158717 62158760 -93471360 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1059 223 209 57 142 chr4 62158760 62158822 -93471298 - RSINE1 SINE B4 -67 98 33 3 1059 1097 132 104 16 chr4 62158822 62159014 -93471106 - B3 SINE B2 -3 213 5 4 1059 223 209 57 142 chr4 62159014 62159057 -93471063 - RSINE1 SINE B4 -133 32 2 3 1059 273 282 97 0 chr4 62159068 62159171 -93470949 - PB1D10 SINE Alu 0 117 5 4 1059 239 267 33 0 chr4 62159547 62159607 -93470513 - ID4 SINE ID -20 63 2 4 1059 446 282 44 30 chr4 62159614 62159749 -93470371 + B1F SINE Alu 13 149 0 4 1059 434 315 26 26 chr4 62159824 62159977 -93470143 + RSINE1 SINE B4 2 154 -11 4 1059 207 0 0 0 chr4 62159980 62160003 -93470117 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1059 604 233 179 5 chr4 62161290 62161480 -93468640 + ID_B1 SINE B4 1 223 -1 4 1059 811 155 44 15 chr4 62161484 62161661 -93468459 + B3 SINE B2 2 193 0 4 1059 1134 161 20 5 chr4 62162061 62162261 -93467859 - B3 SINE B2 -12 204 2 4 1059 210 281 18 0 chr4 62162534 62162591 -93467529 - MIR3 SINE MIR -141 67 10 4 1059 440 233 58 10 chr4 62163749 62163853 -93466267 - PB1D10 SINE Alu -8 109 1 4 1059 294 250 135 39 chr4 62164997 62165101 -93465019 + PB1D10 SINE Alu 1 114 -3 4 1059 768 126 158 0 chr4 62165260 62165387 -93464733 - B1_Mus1 SINE Alu -1 147 1 4 1059 554 216 0 26 chr4 62165553 62165667 -93464453 + PB1D9 SINE Alu 3 113 -7 4 1059 359 193 214 26 chr4 62165809 62165926 -93464194 - B1F SINE Alu -6 143 5 4 1059 22 0 0 0 chr4 62166100 62166122 -93463998 + AT_rich Low_complexity Low_complexity 1 22 0 4 1059 252 286 104 24 chr4 62166177 62166378 -93463742 - L1M5 LINE L1 -408 5765 5545 4 1059 1214 61 0 0 chr4 62166421 62166569 -93463551 - B1_Mus1 SINE Alu 0 148 1 4 1059 308 289 55 11 chr4 62166655 62166746 -93463374 - PB1D10 SINE Alu -16 101 7 4 1059 241 306 16 0 chr4 62166691 62166753 -93463367 - B4A SINE B4 -146 146 84 4 1059 288 322 76 7 chr4 62166851 62166995 -93463125 - RSINE1 SINE B4 -10 155 2 4 1059 219 320 192 28 chr4 62168607 62168784 -93461336 + L2b LINE L2 2980 3185 -190 4 1059 221 240 20 0 chr4 62169427 62169477 -93460643 + ID4_ SINE ID 3 53 -30 4 1059 931 234 124 12 chr4 62172185 62172444 -93457676 - B4 SINE B4 0 292 5 4 1059 200 258 11 33 chr4 62172456 62172548 -93457572 + CT-rich Low_complexity Low_complexity 2 91 0 4 1059 506 249 47 132 chr4 62173457 62173523 -93456597 - B4A SINE B4 -7 285 91 4 1059 704 191 14 41 chr4 62173523 62173670 -93456450 - B1_Mur1 SINE Alu -1 148 6 4 1059 643 279 50 0 chr4 62173670 62173871 -93456249 - B4A SINE B4 -80 212 2 4 1059 180 0 0 0 chr4 62175512 62175532 -93454588 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1059 1464 36 0 131 chr4 62175545 62175766 -93454354 - B2_Mm1a SINE B2 -1 192 1 4 1059 252 240 0 0 chr4 62175974 62176024 -93454096 - ID4 SINE ID -31 52 3 4 1059 325 169 0 48 chr4 62176033 62176095 -93454025 - PB1D10 SINE Alu 0 127 62 4 1059 419 223 152 27 chr4 62176343 62176459 -93453661 - ID_B1 SINE B4 -64 228 106 4 1059 277 224 35 148 chr4 62176357 62176472 -93453648 - PB1D7 SINE Alu -5 115 14 4 1059 834 11 0 0 chr4 62177460 62177555 -93452565 + (GGAAA)n Simple_repeat Simple_repeat 5 99 0 4 1059 261 350 68 29 chr4 62177995 62178098 -93452022 - MIR3 SINE MIR -89 119 13 4 1059 264 310 85 45 chr4 62178115 62178291 -93451829 - MIRm SINE MIR -90 186 4 4 1059 607 258 118 5 chr4 62178615 62178802 -93451318 - B3 SINE B2 -7 209 2 4 1059 183 280 213 9 chr4 62178875 62178983 -93451137 - MIR3 SINE MIR -49 159 30 4 1059 338 84 11 57 chr4 62181610 62181698 -93448422 + (CAAA)n Simple_repeat Simple_repeat 4 87 0 4 1059 1090 51 65 0 chr4 62183081 62183219 -93446901 + B1_Mus2 SINE Alu 1 147 0 4 1059 216 0 0 0 chr4 62183219 62183243 -93446877 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1059 1169 88 0 0 chr4 62183317 62183465 -93446655 + B1_Mus1 SINE Alu 1 148 0 4 1059 282 368 0 0 chr4 62184990 62185134 -93444986 + CT-rich Low_complexity Low_complexity 1 144 0 4 1059 189 0 0 0 chr4 62186632 62186653 -93443467 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1059 467 16 48 0 chr4 62187105 62187167 -93442953 + (TTTTC)n Simple_repeat Simple_repeat 4 68 0 4 1059 189 0 0 0 chr4 62187187 62187208 -93442912 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1059 296 318 167 50 chr4 62187208 62187586 -93442534 - MER102c DNA MER1_type -1989 439 2 4 1059 197 284 108 0 chr4 62187619 62187693 -93442427 + L2b LINE L2 3293 3374 -1 4 1059 542 291 70 39 chr4 62188050 62188279 -93441841 - B4A SINE B4 -54 238 3 4 1059 1328 101 39 0 chr4 62188362 62188540 -93441580 - B2_Mm2 SINE B2 -8 187 3 4 1059 528 118 100 0 chr4 62188574 62188684 -93441436 - Lx9 LINE L1 -7 7637 7517 4 1059 333 0 0 0 chr4 62188684 62188721 -93441399 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1059 5915 198 83 9 chr4 62188725 62189996 -93440124 - Lx9 LINE L1 -183 7461 6098 4 1059 486 0 0 0 chr4 62190005 62190059 -93440061 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1059 1022 198 42 47 chr4 62190080 62190292 -93439828 - B3 SINE B2 -5 211 1 4 1059 181 309 44 0 chr4 62190315 62190383 -93439737 - MIRc SINE MIR -132 136 66 4 1059 683 221 0 15 chr4 62190529 62190662 -93439458 - B1_Mur1 SINE Alu -5 144 14 4 1059 204 97 0 0 chr4 62190890 62190921 -93439199 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1059 760 123 63 32 chr4 62190956 62191082 -93439038 - B3 SINE B2 -86 130 1 4 1059 881 227 70 18 chr4 62191082 62191300 -93438820 - B4A SINE B4 -60 232 3 4 1059 206 254 0 35 chr4 62191356 62191413 -93438707 + C-rich Low_complexity Low_complexity 2 56 0 4 1059 477 0 0 0 chr4 62191413 62191466 -93438654 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1059 486 289 88 0 chr4 62191467 62191581 -93438539 - RSINE1 SINE B4 -41 124 1 4 1059 485 285 38 15 chr4 62191588 62191720 -93438400 - B1F SINE Alu 0 149 15 4 1059 637 218 11 40 chr4 62191764 62191910 -93438210 - B1_Mur2 SINE Alu -1 148 3 4 1059 913 246 108 23 chr4 62192046 62192492 -93437628 - RLTR16 LTR ERVK -21 484 1 4 1059 655 154 137 8 chr4 62192550 62192674 -93437446 - B1_Mur4 SINE Alu -2 148 9 4 1059 403 244 112 22 chr4 62192557 62192678 -93437442 - B4A SINE B4 -73 219 87 4 1059 905 142 0 21 chr4 62192678 62192822 -93437298 - B1_Mus1 SINE Alu -5 143 3 4 1059 403 244 112 22 chr4 62192822 62192834 -93437286 - B4A SINE B4 -206 86 75 4 1059 828 0 0 0 chr4 62193012 62193104 -93437016 + (TTC)n Simple_repeat Simple_repeat 2 93 0 4 1059 1117 287 41 15 chr4 62193982 62194322 -93435798 - MLT1B LTR MaLR -41 349 1 4 1059 695 228 15 0 chr4 62194388 62194524 -93435596 - B1_Mm SINE Alu -7 140 3 4 1059 360 0 0 0 chr4 62194539 62194579 -93435541 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 4 1059 1653 141 55 39 chr4 62195212 62195521 -93434599 + RLTR28 LTR ERVL 2 315 -209 4 1059 1546 143 42 18 chr4 62195521 62195806 -93434314 + RMER4B LTR ERVK 1 292 -293 4 1059 225 269 137 21 chr4 62195820 62195915 -93434205 - RMER5 LTR ERV1 -397 137 32 4 1059 438 20 0 0 chr4 62196315 62196366 -93433754 + (TGG)n Simple_repeat Simple_repeat 3 53 0 4 1059 476 254 26 72 chr4 62196927 62197080 -93433040 - RSINE1 SINE B4 0 165 20 4 1059 1238 119 5 15 chr4 62197234 62197430 -93432690 + B2_Mm2 SINE B2 2 195 0 4 1059 283 116 343 38 chr4 62197695 62197800 -93432320 - B2_Mm2 SINE B2 -1 194 58 4 1059 1191 113 6 17 chr4 62197857 62198037 -93432083 - B2_Mm1t SINE B2 -14 179 2 4 1059 745 179 90 32 chr4 62198041 62198197 -93431923 - B3 SINE B2 -4 212 48 4 1059 255 279 0 0 chr4 62198266 62198327 -93431793 - MIRb SINE MIR -6 262 202 4 1059 285 29 0 0 chr4 62198427 62198461 -93431659 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1059 1224 61 0 0 chr4 62198461 62198608 -93431512 - B1_Mus2 SINE Alu 0 147 1 4 1059 196 304 110 37 chr4 62198641 62198723 -93431397 - MIR3 SINE MIR -6 202 115 4 1059 31 82 0 0 chr4 62198734 62198807 -93431313 + AT_rich Low_complexity Low_complexity 1 73 0 4 1059 279 0 0 0 chr4 62198922 62198953 -93431167 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1059 567 153 114 26 chr4 62198953 62199067 -93431053 - B1F2 SINE Alu -5 144 21 4 1059 1217 201 9 9 chr4 62199534 62199750 -93430370 - B3 SINE B2 0 216 1 4 1059 458 333 16 39 chr4 62200288 62200416 -93429704 - RSINE1 SINE B4 0 165 41 4 1059 22 35 0 0 chr4 62200423 62200452 -93429668 + AT_rich Low_complexity Low_complexity 1 29 0 4 1059 595 209 25 42 chr4 62200510 62200630 -93429490 - RSINE1 SINE B4 -39 126 9 4 1059 573 285 7 7 chr4 62200684 62200829 -93429291 + RSINE1 SINE B4 3 147 -18 4 1059 250 299 67 62 chr4 62202096 62202274 -93427846 - MTEa LTR MaLR -7 372 194 4 1059 324 188 0 0 chr4 62202503 62202572 -93427548 + (CAT)n Simple_repeat Simple_repeat 1 69 0 4 1059 195 42 0 0 chr4 62202582 62202606 -93427514 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1059 273 267 33 0 chr4 62202607 62202667 -93427453 - RSINE1 SINE B4 -35 130 69 4 1059 215 353 123 13 chr4 62203336 62203491 -93426629 + MIR SINE MIR 72 243 -19 4 1059 242 300 165 11 chr4 62205069 62205160 -93424960 + PB1D10 SINE Alu 5 109 -8 4 1059 324 0 0 0 chr4 62205688 62205724 -93424396 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1059 3740 207 56 125 chr4 62205920 62207102 -93423018 - RLTR25A LTR ERVK -1 1102 3 5 1059 552 222 62 23 chr4 62207271 62207400 -93422720 - B1F SINE Alu -2 147 14 5 1059 366 139 27 36 chr4 62207590 62207702 -93422418 + GA-rich Low_complexity Low_complexity 4 114 0 5 1059 526 289 50 50 chr4 62207712 62207872 -93422248 - B3A SINE B2 -36 162 3 5 1059 257 369 36 9 chr4 62207932 62208044 -93422076 - MLT1H LTR MaLR -359 190 76 5 1059 225 254 117 17 chr4 62208208 62208268 -93421852 + LTR29 LTR ERV1 101 166 -456 5 1059 376 240 112 49 chr4 62209309 62209576 -93420544 - L1MC5 LINE L1 -214 7747 7464 5 1059 1091 101 14 0 chr4 62209735 62209883 -93420237 + B1_Mur4 SINE Alu 1 150 0 5 1059 290 67 22 0 chr4 62209949 62209994 -93420126 + (TATAA)n Simple_repeat Simple_repeat 4 49 0 5 1059 972 81 72 29 chr4 62210046 62210185 -93419935 + B1_Mm SINE Alu 1 145 -2 5 1059 297 0 0 0 chr4 62210229 62210262 -93419858 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1059 237 250 208 72 chr4 62210737 62210766 -93419354 + MER115 DNA Tip100 524 555 -138 5 1059 1580 180 105 17 chr4 62210766 62211110 -93419010 - ORR1D1 LTR MaLR 0 374 1 5 1059 237 250 208 72 chr4 62211110 62211205 -93418915 + MER115 DNA Tip100 556 665 -28 5 1059 533 288 12 36 chr4 62211222 62211388 -93418732 + RSINE1 SINE B4 4 165 0 5 1059 22 35 0 0 chr4 62211394 62211423 -93418697 + AT_rich Low_complexity Low_complexity 1 29 0 5 1059 589 301 89 53 chr4 62211773 62212002 -93418118 - L1MC5 LINE L1 -164 7797 7552 5 1059 775 198 210 0 chr4 62212002 62212169 -93417951 + B3 SINE B2 3 204 -12 5 1059 589 301 89 53 chr4 62212169 62212409 -93417711 - L1MC5 LINE L1 -410 7551 7311 5 1059 1023 224 34 0 chr4 62212537 62212742 -93417378 - B3 SINE B2 -4 212 1 5 1059 559 217 179 31 chr4 62212766 62212990 -93417130 - Lx8 LINE L1 -1 7472 7216 5 1059 367 260 13 0 chr4 62213222 62213299 -93416821 - B3A SINE B2 -110 88 11 5 1059 745 278 35 28 chr4 62213313 62213602 -93416518 - L1M4b LINE L1 -1988 5018 4728 5 1059 3106 117 22 32 chr4 62213608 62214112 -93416008 + RLTR19 LTR ERVK 1 499 0 5 1059 764 150 19 6 chr4 62214135 62214296 -93415824 + CT-rich Low_complexity Low_complexity 3 165 0 5 1059 257 303 17 84 chr4 62214298 62214417 -93415703 - PB1D10 SINE Alu -2 115 5 5 1059 412 246 105 146 chr4 62214438 62214491 -93415629 - L1M4b LINE L1 -2457 4549 4481 5 1059 603 40 0 0 chr4 62214491 62214565 -93415555 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 5 1059 412 246 105 146 chr4 62214565 62214636 -93415484 - L1M4b LINE L1 -2526 4480 4419 5 1059 195 69 0 0 chr4 62214636 62214665 -93415455 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5 1059 941 146 0 20 chr4 62214668 62214815 -93415305 - B1_Mur4 SINE Alu -5 145 2 5 1059 963 157 23 17 chr4 62214823 62214998 -93415122 - B2_Mm2 SINE B2 -18 177 2 5 1059 412 246 105 146 chr4 62214998 62215106 -93415014 - L1M4b LINE L1 -2588 4418 4313 5 1059 369 0 0 0 chr4 62215107 62215148 -93414972 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 1059 823 223 114 0 chr4 62215149 62215324 -93414796 - B3 SINE B2 -21 195 1 5 1059 424 250 165 8 chr4 62215329 62215462 -93414658 - L1M4b LINE L1 -2703 4303 4150 5 1059 587 186 147 0 chr4 62215491 62215620 -93414500 + B1_Mus1 SINE Alu 1 148 0 5 1059 1625 31 0 16 chr4 62215639 62215833 -93414287 + B2_Mm1a SINE B2 1 191 -2 5 1059 294 222 84 53 chr4 62215882 62215977 -93414143 - B1F1 SINE Alu -41 108 11 5 1059 30 59 0 0 chr4 62216032 62216083 -93414037 + AT_rich Low_complexity Low_complexity 1 51 0 5 1059 2999 70 0 3 chr4 62216131 62216520 -93413600 - L1Md_F2 LINE L1 0 6582 6195 5 1059 464 267 94 29 chr4 62216536 62216706 -93413414 - L1M4b LINE L1 -3153 3853 3673 5 1059 335 352 69 46 chr4 62216726 62217030 -93413090 - L1M4b LINE L1 -6652 682 372 5 1059 1108 97 23 0 chr4 62217199 62217374 -93412746 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1059 565 155 184 26 chr4 62217381 62217533 -93412587 + B2_Mm2 SINE B2 2 177 -18 5 1059 894 164 212 11 chr4 62217568 62217747 -93412373 + B3 SINE B2 2 216 0 5 1059 270 81 0 0 chr4 62217785 62217822 -93412298 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1059 575 252 58 0 chr4 62217824 62217963 -93412157 - RSINE1 SINE B4 -16 149 3 5 1059 699 247 103 46 chr4 62218016 62218158 -93411962 - B3 SINE B2 0 216 66 5 1059 913 182 5 60 chr4 62218158 62218357 -93411763 - B2_Mm2 SINE B2 -5 190 3 5 1059 699 247 103 46 chr4 62218357 62218409 -93411711 - B3 SINE B2 -151 65 11 5 1059 498 311 50 83 chr4 62219080 62219382 -93410738 - B4 SINE B4 0 292 1 5 1059 677 211 223 0 chr4 62219860 62220035 -93410085 - B3 SINE B2 -1 215 2 5 1059 225 0 0 0 chr4 62220053 62220078 -93410042 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1059 952 306 71 16 chr4 62220335 62220713 -93409407 - Lx8 LINE L1 -350 7123 6725 5 1059 1293 169 14 0 chr4 62221567 62221786 -93408334 + URR1A DNA MER1_type 1 222 -4 5 1059 462 214 0 30 chr4 62221819 62221920 -93408200 - PB1D7 SINE Alu 0 120 23 5 1059 652 184 154 13 chr4 62221903 62222052 -93408068 - MTD LTR MaLR -63 356 187 5 1059 656 111 10 0 chr4 62222051 62222150 -93407970 + ORR1A4 LTR MaLR 230 329 0 5 1059 972 208 16 27 chr4 62222152 62222340 -93407780 - MTD LTR MaLR -233 186 1 5 1059 608 181 6 0 chr4 62222862 62223033 -93407087 + CT-rich Low_complexity Low_complexity 1 172 0 5 1059 302 333 31 10 chr4 62223127 62223224 -93406896 - PB1D10 SINE Alu -9 108 10 5 1059 614 291 78 19 chr4 62223281 62223406 -93406714 + RSINE1 SINE B4 3 124 -41 5 1059 477 0 0 0 chr4 62223406 62223459 -93406661 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1059 614 291 78 19 chr4 62223459 62223487 -93406633 + RSINE1 SINE B4 125 164 -1 5 1059 697 199 182 0 chr4 62223508 62223684 -93406436 + B3 SINE B2 1 208 -8 5 1059 520 219 31 0 chr4 62223711 62223807 -93406313 + PB1D10 SINE Alu 10 108 -9 5 1059 390 261 78 138 chr4 62223929 62223957 -93406163 - B3 SINE B2 -11 205 184 5 1059 363 44 0 0 chr4 62223957 62224002 -93406118 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1059 538 258 71 94 chr4 62224002 62224191 -93405929 - B3A SINE B2 -33 183 1 5 1059 186 411 10 57 chr4 62224532 62224741 -93405379 + L2b LINE L2 2936 3134 -241 5 1059 1378 74 0 35 chr4 62225031 62225228 -93404892 - B2_Mm2 SINE B2 -4 191 2 5 1059 23 0 0 0 chr4 62225232 62225255 -93404865 + AT_rich Low_complexity Low_complexity 1 23 0 5 1059 698 221 8 0 chr4 62225326 62225448 -93404672 - B1_Mur2 SINE Alu -25 124 2 5 1059 21 0 0 0 chr4 62225459 62225480 -93404640 + AT_rich Low_complexity Low_complexity 1 21 0 5 1059 1005 139 139 0 chr4 62225480 62225660 -93404460 - B3 SINE B2 -11 205 1 5 1059 2300 136 47 12 chr4 62226716 62227116 -93403004 + MTC LTR MaLR 2 399 -22 5 1059 290 311 58 40 chr4 62227955 62228230 -93401890 - L1MEc LINE L1 -4479 1921 1642 5 1059 541 167 109 42 chr4 62228230 62228254 -93401866 + B1_Mur1 SINE Alu 23 48 -101 5 1059 219 36 0 0 chr4 62228254 62228282 -93401838 + (TAGG)n Simple_repeat Simple_repeat 2 29 0 5 1059 541 167 109 42 chr4 62228282 62228376 -93401744 + B1_Mur1 SINE Alu 49 148 -1 5 1059 252 227 40 0 chr4 62228605 62228680 -93401440 - L1MEc LINE L1 -4996 1404 1327 5 1059 664 289 57 12 chr4 62228756 62229001 -93401119 - B4 SINE B4 -26 266 11 5 1059 788 82 45 34 chr4 62229311 62229488 -93400632 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1059 333 136 0 0 chr4 62229477 62229543 -93400577 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1059 228 282 62 52 chr4 62229543 62229664 -93400456 - ORR1E LTR MaLR -168 191 10 5 1059 1302 243 216 22 chr4 62229750 62230344 -93399776 - L1MEc LINE L1 -5373 1027 318 5 1059 432 143 19 28 chr4 62230441 62230549 -93399571 + CT-rich Low_complexity Low_complexity 2 108 0 5 1059 1232 48 0 7 chr4 62230550 62230698 -93399422 - B1_Mus1 SINE Alu 0 148 2 5 1059 314 293 0 0 chr4 62230711 62230786 -93399334 - L1MEc LINE L1 -6291 109 35 5 1059 198 0 0 0 chr4 62231064 62231086 -93399034 + (TGGG)n Simple_repeat Simple_repeat 1 22 0 5 1059 324 328 267 19 chr4 62231471 62231838 -93398282 + L2c LINE L2 1995 2452 -967 5 1059 2067 165 92 23 chr4 62231843 62232233 -93397887 + MTC LTR MaLR 5 421 0 5 1059 336 219 31 0 chr4 62232614 62232678 -93397442 - ID4 SINE ID -13 70 5 5 1059 181 349 69 80 chr4 62232739 62233013 -93397107 + L2c LINE L2 2965 3235 -152 5 1059 480 274 59 17 chr4 62233110 62233152 -93396968 - PB1D10 SINE Alu 0 149 102 5 1059 848 164 20 20 chr4 62233152 62233301 -93396819 - B1_Mur3 SINE Alu 0 149 1 5 1059 515 204 32 0 chr4 62233301 62233400 -93396720 - B1F1 SINE Alu -13 104 1 5 1059 540 212 20 0 chr4 62233416 62233515 -93396605 - ID_B1 SINE B4 -2 222 122 5 1059 1354 79 6 6 chr4 62233618 62233797 -93396323 - B2_Mm2 SINE B2 -14 181 3 5 1059 305 254 32 0 chr4 62234100 62234163 -93395957 - ID4 SINE ID -17 66 2 5 1059 432 243 26 35 chr4 62234220 62234335 -93395785 - PB1D10 SINE Alu -1 116 3 5 1059 244 232 56 83 chr4 62234335 62234362 -93395758 - MT2B2 LTR ERVL -422 162 139 5 1059 347 322 8 8 chr4 62234347 62234466 -93395654 - MER58C DNA MER1_type -96 119 1 5 1059 254 255 192 19 chr4 62234485 62234589 -93395531 - L1M5 LINE L1 -2313 3833 3712 5 1059 2986 8 5 121 chr4 62234657 62235072 -93395048 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1059 987 86 159 0 chr4 62235072 62235235 -93394885 + IAPEz-int LTR ERVK 8 196 -6285 5 1059 7875 78 71 16 chr4 62235206 62236440 -93393680 + IAPEz-int LTR ERVK 67 1313 -5168 5 1059 28247 17 1 1 chr4 62236439 62239713 -93390407 + IAPEz-int LTR ERVK 3210 6481 0 5 1059 2986 8 5 121 chr4 62239713 62240128 -93389992 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1059 315 169 68 40 chr4 62240235 62240309 -93389811 - L1M5 LINE L1 -2942 3204 3129 5 1059 788 235 116 11 chr4 62240310 62240499 -93389621 - B3 SINE B2 0 216 8 5 1059 484 56 28 0 chr4 62240651 62240723 -93389397 + (TCC)n Simple_repeat Simple_repeat 3 76 0 5 1059 580 186 243 57 chr4 62241026 62241115 -93389005 + B3 SINE B2 1 116 -100 5 1059 1388 117 13 51 chr4 62241115 62241349 -93388771 + URR1B DNA MER1_type 1 225 0 5 1059 580 186 243 57 chr4 62241349 62241406 -93388714 + B3 SINE B2 117 165 -51 5 1059 279 0 0 0 chr4 62241406 62241437 -93388683 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1059 580 186 243 57 chr4 62241437 62241466 -93388654 + B3 SINE B2 166 210 -6 5 1059 631 304 106 34 chr4 62241494 62241702 -93388418 - ID_B1 SINE B4 0 224 2 5 1059 1031 293 31 42 chr4 62242091 62242472 -93387648 - MTE2a LTR MaLR 0 379 3 5 1059 29 0 0 0 chr4 62242485 62242514 -93387606 + AT_rich Low_complexity Low_complexity 1 29 0 5 1059 218 314 31 31 chr4 62242679 62242807 -93387313 + (TATATG)n Simple_repeat Simple_repeat 1 128 0 5 1059 496 276 65 74 chr4 62243385 62243616 -93386504 + MIRb SINE MIR 5 233 -35 5 1059 289 267 44 11 chr4 62245781 62245872 -93384248 - MIRb SINE MIR -8 260 167 5 1059 274 224 50 33 chr4 62246553 62246613 -93383507 - ID4 SINE ID -7 76 16 6 1059 357 62 0 0 chr4 62246936 62246984 -93383136 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1059 895 296 29 26 chr4 62247247 62247594 -93382526 - L1MB8 LINE L1 -10 6168 5821 6 1059 351 0 0 0 chr4 62247617 62247656 -93382464 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1059 293 367 10 0 chr4 62247657 62247755 -93382365 - RSINE1 SINE B4 -14 151 53 6 1059 244 322 21 65 chr4 62247738 62247831 -93382289 + B4A SINE B4 91 179 -113 6 1059 341 245 124 47 chr4 62247967 62248160 -93381960 - L1MB8 LINE L1 -1298 4848 4641 6 1059 324 0 0 0 chr4 62248654 62248690 -93381430 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1059 218 328 15 0 chr4 62248707 62248774 -93381346 - B4A SINE B4 -198 94 27 6 1059 495 263 0 58 chr4 62248768 62248889 -93381231 - PB1D10 SINE Alu -3 114 1 6 1059 401 327 10 0 chr4 62248796 62248900 -93381220 - ID_B1 SINE B4 -50 174 70 6 1059 428 334 85 41 chr4 62248907 62249297 -93380823 - L1MB8 LINE L1 -3336 2810 2404 6 1059 246 264 161 18 chr4 62249575 62249687 -93380433 - B1F SINE Alu -14 135 8 6 1059 652 236 42 60 chr4 62250084 62250251 -93379869 - RSINE1 SINE B4 0 165 2 6 1059 180 0 0 0 chr4 62250255 62250275 -93379845 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6 1059 919 221 14 18 chr4 62250279 62250496 -93379624 - B3 SINE B2 0 216 1 6 1059 761 231 85 76 chr4 62250876 62250916 -93379204 + B3 SINE B2 1 36 -180 6 1059 1170 58 0 0 chr4 62250916 62251053 -93379067 + B1_Mm SINE Alu 1 137 -10 6 1059 321 47 0 0 chr4 62251053 62251096 -93379024 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 6 1059 761 231 85 76 chr4 62251096 62251265 -93378855 + B3 SINE B2 37 212 -4 6 1059 819 170 7 29 chr4 62251373 62251501 -93378619 + B1_Mus1 SINE Alu 10 137 -11 6 1059 923 106 7 0 chr4 62251501 62251643 -93378477 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 6 1059 203 256 0 0 chr4 62251844 62251887 -93378233 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1059 765 223 170 24 chr4 62251888 62252141 -93377979 - B4A SINE B4 -2 290 1 6 1059 243 125 0 0 chr4 62252229 62252269 -93377851 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1059 603 282 164 24 chr4 62252418 62252716 -93377404 - MLT1F1 LTR MaLR -25 544 205 6 1059 375 186 0 0 chr4 62252844 62252946 -93377174 + GA-rich Low_complexity Low_complexity 1 102 0 6 1059 609 230 42 28 chr4 62252950 62253093 -93377027 - RSINE1 SINE B4 -17 148 4 6 1059 348 200 0 0 chr4 62253356 62253436 -93376684 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1059 469 327 14 4 chr4 62253479 62253714 -93376406 - Lx7 LINE L1 -14 5833 5629 6 1059 283 316 18 0 chr4 62253716 62253830 -93376290 - L1M2 LINE L1 -709 5591 5476 6 1059 189 167 0 0 chr4 62253832 62253844 -93376276 + T-rich Low_complexity Low_complexity 31 42 0 6 1059 1226 68 0 0 chr4 62253844 62253990 -93376130 - B1_Mus1 SINE Alu 0 148 3 6 1059 189 167 0 0 chr4 62253990 62254019 -93376101 + T-rich Low_complexity Low_complexity 2 30 0 6 1059 4029 59 4 0 chr4 62254021 62254513 -93375607 - L1_Mus1 LINE L1 0 6567 6074 6 1059 442 342 0 0 chr4 62255062 62255217 -93374903 - Lx8 LINE L1 -352 7121 6967 6 1059 506 246 66 42 chr4 62255255 62255467 -93374653 - Lx7 LINE L1 -439 5408 5192 6 1059 1389 280 27 81 chr4 62255900 62256556 -93373564 + L1MB7 LINE L1 5476 6096 -88 6 1059 438 247 160 39 chr4 62256766 62256922 -93373198 - B3A SINE B2 -17 181 7 6 1059 226 242 16 31 chr4 62256927 62256991 -93373129 - MLT1F1 LTR MaLR -505 64 2 6 1059 202 259 18 18 chr4 62257050 62257105 -93373015 + L2 LINE L2 2029 2083 -1336 6 1059 438 53 0 0 chr4 62258040 62258097 -93372023 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1059 520 251 86 112 chr4 62258150 62258347 -93371773 - B4A SINE B4 -18 274 83 6 1059 873 0 0 0 chr4 62258443 62258540 -93371580 + (TTCTC)n Simple_repeat Simple_repeat 2 98 0 6 1059 569 215 4 13 chr4 62258546 62258763 -93371357 + CT-rich Low_complexity Low_complexity 1 215 0 6 1059 430 209 0 23 chr4 62258772 62258860 -93371260 - B4A SINE B4 -205 87 2 6 1060 486 312 32 13 chr4 62259669 62259825 -93370295 - RSINE1 SINE B4 -1 164 6 6 1060 414 0 0 0 chr4 62259837 62259883 -93370237 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1060 874 123 15 8 chr4 62259884 62260015 -93370105 - B1_Mus2 SINE Alu -12 135 4 6 1060 432 255 58 96 chr4 62260015 62260039 -93370081 - B4 SINE B4 -77 214 66 6 1060 321 26 0 0 chr4 62260167 62260205 -93369915 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1060 877 161 202 36 chr4 62260524 62260717 -93369403 + URR1B DNA MER1_type 1 225 0 6 1060 221 254 30 0 chr4 62261985 62262052 -93368068 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 6 1060 376 43 0 0 chr4 62262133 62262180 -93367940 + MTC LTR MaLR 1 47 -374 6 1060 312 140 0 20 chr4 62262178 62262229 -93367891 + MTC LTR MaLR 372 421 0 6 1060 426 315 51 73 chr4 62262244 62262422 -93367698 - B4 SINE B4 -113 179 6 6 1060 948 71 21 30 chr4 62262605 62262838 -93367282 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 6 1060 357 214 0 28 chr4 62262838 62262910 -93367210 - ID4_ SINE ID -5 78 9 6 1060 367 263 0 10 chr4 62262916 62263012 -93367108 - PB1D10 SINE Alu -5 112 18 6 1060 1093 221 5 14 chr4 62263208 62263419 -93366701 + B3 SINE B2 1 209 -7 6 1060 248 294 144 22 chr4 62263730 62263869 -93366251 + L3 LINE CR1 4324 4479 -10 6 1060 477 280 136 30 chr4 62264357 62264556 -93365564 + MIRb SINE MIR 3 222 -46 6 1060 180 0 0 0 chr4 62265617 62265637 -93364483 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 6 1060 341 231 62 25 chr4 62265667 62265747 -93364373 - ID SINE ID -140 84 2 6 1060 258 418 20 8 chr4 62265759 62266012 -93364108 - MIR SINE MIR -4 258 3 6 1060 192 314 72 20 chr4 62266059 62266174 -93363946 + MIR SINE MIR 2 126 -150 6 1060 362 211 14 0 chr4 62268019 62268090 -93362030 + MIRb SINE MIR 104 175 -93 6 1060 581 69 0 11 chr4 62269353 62269441 -93360679 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1060 343 268 14 0 chr4 62269803 62269874 -93360246 - ID4_ SINE ID -11 72 1 6 1060 251 287 148 0 chr4 62270211 62270326 -93359794 - MIRb SINE MIR -122 146 8 6 1060 192 246 141 47 chr4 62271593 62271657 -93358463 - MIRb SINE MIR -49 219 150 6 1060 351 293 227 0 chr4 62271694 62271844 -93358276 - MIRb SINE MIR -8 260 77 6 1060 584 244 105 35 chr4 62272107 62272336 -93357784 + B4A SINE B4 48 292 0 6 1060 288 208 13 40 chr4 62272404 62272479 -93357641 + MIR SINE MIR 69 141 -121 6 1060 261 0 0 0 chr4 62272537 62272566 -93357554 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 1060 1739 16 0 0 chr4 62272606 62272798 -93357322 + B2_Mm1a SINE B2 1 192 -1 6 1060 231 36 0 0 chr4 62272935 62272963 -93357157 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 6 1060 222 118 0 0 chr4 62273252 62273286 -93356834 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1060 254 276 0 0 chr4 62277071 62277129 -93352991 - L2b LINE L2 -1 3374 3317 6 1060 411 9 129 0 chr4 62277148 62277264 -93352856 + (CAGG)n Simple_repeat Simple_repeat 4 134 0 6 1060 855 147 11 28 chr4 62278443 62278625 -93351495 + CT-rich Low_complexity Low_complexity 2 180 0 6 1060 275 299 57 41 chr4 62278966 62279088 -93351032 - MIRb SINE MIR -75 193 70 6 1060 232 388 17 0 chr4 62279321 62279437 -93350683 + MER3 DNA MER1_type 39 156 -53 6 1060 567 0 0 0 chr4 62281460 62281523 -93348597 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 6 1060 403 92 356 30 chr4 62281525 62281626 -93348494 - B2_Mm2 SINE B2 -15 180 47 6 1060 1232 119 6 11 chr4 62281677 62281856 -93348264 - B2_Mm1t SINE B2 -14 179 2 6 1060 374 302 42 94 chr4 62283814 62284026 -93346094 - B3A SINE B2 0 216 16 6 1060 1189 136 93 42 chr4 62284026 62284241 -93345879 + URR1A DNA MER1_type 1 226 0 6 1060 432 286 0 0 chr4 62285298 62285396 -93344724 + B1F SINE Alu 1 98 -51 6 1060 252 0 0 0 chr4 62285396 62285424 -93344696 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1060 213 39 0 0 chr4 62285424 62285449 -93344671 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1060 368 305 7 59 chr4 62285567 62285703 -93344417 + B4 SINE B4 81 209 -83 6 1060 621 40 0 0 chr4 62285703 62285779 -93344341 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1060 234 91 0 0 chr4 62285853 62285886 -93344234 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1060 180 316 49 25 chr4 62286347 62286428 -93343692 + MIR3 SINE MIR 93 175 -33 6 1060 210 143 0 0 chr4 62287182 62287231 -93342889 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1060 979 264 44 11 chr4 62289162 62289434 -93340686 - B4A SINE B4 0 292 12 6 1060 258 32 0 0 chr4 62290029 62290060 -93340060 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1060 274 283 48 39 chr4 62290155 62290258 -93339862 + MIRc SINE MIR 50 153 -115 6 1060 307 355 18 0 chr4 62291747 62291857 -93338263 - PB1D10 SINE Alu -3 114 3 6 1060 186 43 0 0 chr4 62292777 62292800 -93337320 + (CCCCCT)n Simple_repeat Simple_repeat 2 24 0 6 1060 474 49 0 0 chr4 62293068 62293129 -93336991 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1060 349 339 75 18 chr4 62293292 62293473 -93336647 + Lx7 LINE L1 5537 5754 -1942 6 1060 304 216 100 75 chr4 62293615 62293695 -93336425 - ID4 SINE ID 0 83 2 6 1060 368 262 48 10 chr4 62293700 62293804 -93336316 - PB1D10 SINE Alu -9 108 1 6 1060 628 256 0 0 chr4 62293844 62293969 -93336151 + RSINE1 SINE B4 6 130 -35 6 1060 321 26 0 0 chr4 62294006 62294044 -93336076 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1060 718 199 27 14 chr4 62294206 62294354 -93335766 - B1_Mur4 SINE Alu 0 150 1 7 1060 344 223 32 89 chr4 62294401 62294524 -93335596 + B1_Mur4 SINE Alu 34 149 -1 7 1060 21 0 0 0 chr4 62295342 62295363 -93334757 + GC_rich Low_complexity Low_complexity 1 21 0 7 1060 630 0 0 0 chr4 62295720 62295790 -93334330 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1060 195 289 53 0 chr4 62296115 62296191 -93333929 + MIRc SINE MIR 16 95 -173 7 1060 268 294 0 34 chr4 62296344 62296432 -93333688 + MARNA DNA Mariner 44 128 -458 7 1060 212 246 0 16 chr4 62298060 62298122 -93331998 + C-rich Low_complexity Low_complexity 2 62 0 7 1060 787 66 0 0 chr4 62298692 62298798 -93331322 - B1_Mus2 SINE Alu 0 147 42 7 1060 578 171 122 0 chr4 62298801 62298924 -93331196 - B1_Mur3 SINE Alu 0 149 12 7 1060 27 0 0 0 chr4 62299595 62299622 -93330498 + AT_rich Low_complexity Low_complexity 1 27 0 7 1060 271 113 17 86 chr4 62299873 62299931 -93330189 + MIRc SINE MIR 69 122 -146 7 1060 1029 140 73 0 chr4 62300024 62300203 -93329917 + B2_Mm2 SINE B2 2 193 -2 7 1060 1198 118 17 0 chr4 62300224 62300402 -93329718 - B2_Mm2 SINE B2 -14 181 1 7 1060 278 180 16 0 chr4 62300544 62300605 -93329515 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1060 332 366 37 0 chr4 62300607 62300741 -93329379 - B1F1 SINE Alu -10 139 1 7 1060 24 0 0 0 chr4 62301010 62301034 -93329086 + AT_rich Low_complexity Low_complexity 1 24 0 7 1060 386 259 150 33 chr4 62301982 62302162 -93327958 + MIRb SINE MIR 19 219 -49 7 1060 1017 133 189 22 chr4 62305938 62306123 -93323997 - B3 SINE B2 0 216 1 7 1060 517 152 232 0 chr4 62309556 62309668 -93320452 - B1_Mus2 SINE Alu -1 146 9 7 1060 180 273 18 18 chr4 62309831 62309887 -93320233 + MIRc SINE MIR 23 78 -190 7 1060 297 298 29 9 chr4 62309929 62310034 -93320086 + MIRb SINE MIR 155 261 -7 7 1060 184 329 47 12 chr4 62311591 62311677 -93318443 + MIRb SINE MIR 81 169 -99 7 1060 384 237 100 50 chr4 62311677 62311797 -93318323 + ID_B1 SINE B4 82 207 -17 7 1060 973 104 58 0 chr4 62311831 62311985 -93318135 + B2_Mm2 SINE B2 1 163 -32 7 1060 324 0 0 0 chr4 62311985 62312021 -93318099 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 7 1060 767 205 47 35 chr4 62312021 62312038 -93318082 + B2_Mm1t SINE B2 163 174 -19 7 1060 243 338 0 0 chr4 62312047 62312118 -93318002 + BC1_Mm scRNA scRNA 24 94 -58 7 1060 229 146 24 0 chr4 62312756 62312797 -93317323 - MIRb SINE MIR -178 90 49 7 1060 266 343 71 0 chr4 62314835 62314996 -93315124 + MIR SINE MIR 74 252 -16 7 1060 414 0 0 0 chr4 62315632 62315678 -93314442 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1060 1070 263 58 15 chr4 62316535 62316809 -93313311 - B4A SINE B4 -4 288 3 7 1060 982 263 9 5 chr4 62316822 62317036 -93313084 - ID_B1 SINE B4 -8 216 2 7 1060 196 308 0 0 chr4 62318871 62318936 -93311184 - L2b LINE L2 -274 3101 3037 7 1060 231 103 0 0 chr4 62320830 62320869 -93309251 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7 1060 186 43 0 0 chr4 62321334 62321357 -93308763 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1060 184 239 158 66 chr4 62322563 62322639 -93307481 + L2c LINE L2 3283 3365 -22 7 1060 459 0 0 0 chr4 62322958 62323009 -93307111 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1060 400 340 6 19 chr4 62323017 62323128 -93306992 + MIR3 SINE MIR 20 131 -77 7 1060 276 30 0 0 chr4 62323128 62323161 -93306959 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1060 400 340 6 19 chr4 62323161 62323205 -93306915 + MIR3 SINE MIR 132 173 -35 7 1060 335 269 69 69 chr4 62323909 62324069 -93306051 - MamRep1161 DNA TcMar -775 182 23 7 1060 748 160 46 0 chr4 62325278 62325409 -93304711 + B1_Mus1 SINE Alu 1 137 -11 7 1060 210 37 0 0 chr4 62325412 62325439 -93304681 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1060 1019 257 44 19 chr4 62325839 62326109 -93304011 - Lx6 LINE L1 -26 7434 7158 7 1060 212 254 14 29 chr4 62326309 62326378 -93303742 + L2a LINE L2 3349 3416 -10 7 1060 233 175 53 0 chr4 62326572 62326629 -93303491 + C-rich Low_complexity Low_complexity 5 64 0 7 1060 1019 246 5 14 chr4 62326801 62327019 -93303101 - B3 SINE B2 0 216 1 7 1060 285 296 30 54 chr4 62327046 62327214 -93302906 - L1M LINE L1 -705 5419 5256 7 1060 284 264 11 11 chr4 62328277 62328365 -93301755 - MTEb LTR MaLR -52 327 240 7 1060 188 385 51 15 chr4 62328693 62328830 -93301290 + L2 LINE L2 2699 2840 -579 7 1060 1226 27 0 20 chr4 62329134 62329283 -93300837 - B1_Mus2 SINE Alu -1 146 1 7 1060 368 311 53 8 chr4 62329317 62329450 -93300670 - MLT1K LTR MaLR -316 279 141 7 1060 336 351 78 26 chr4 62330341 62330522 -93299598 - Charlie10 DNA MER1_type -2628 194 6 7 1060 440 297 36 56 chr4 62331287 62331384 -93298736 - RMER5 LTR ERV1 -42 492 395 7 1060 288 0 0 0 chr4 62331384 62331416 -93298704 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1060 440 308 267 26 chr4 62331416 62331709 -93298411 - RMER5 LTR ERV1 -140 394 33 7 1060 312 27 0 0 chr4 62331731 62331768 -93298352 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1060 280 249 159 28 chr4 62332797 62332981 -93297139 + MIR SINE MIR 53 252 -10 7 1060 224 297 40 56 chr4 62333128 62333253 -93296867 + MIR3 SINE MIR 60 182 -26 7 1060 314 240 110 47 chr4 62334314 62334441 -93295679 - MIRc SINE MIR -103 165 31 7 1060 206 0 0 65 chr4 62335000 62335031 -93295089 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 7 1060 294 125 0 0 chr4 62335153 62335201 -93294919 + (GGA)n Simple_repeat Simple_repeat 3 50 0 7 1060 279 79 0 0 chr4 62335224 62335262 -93294858 + (GAA)n Simple_repeat Simple_repeat 2 39 0 7 1060 200 122 24 0 chr4 62335413 62335454 -93294666 + (CCCG)n Simple_repeat Simple_repeat 2 43 0 7 1060 360 0 0 0 chr4 62335696 62335736 -93294384 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1060 196 356 22 0 chr4 62336288 62336378 -93293742 - MIR SINE MIR -84 124 33 7 1060 202 304 196 29 chr4 62337953 62338126 -93291994 + MIR3 SINE MIR 3 204 -4 7 1060 206 105 0 26 chr4 62339030 62339069 -93291051 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 7 1060 640 327 78 53 chr4 62340019 62340711 -93289409 - L1ME3A LINE L1 -238 5935 5206 7 1060 192 77 0 0 chr4 62340711 62340737 -93289383 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1060 448 319 24 78 chr4 62340737 62340823 -93289297 - L1ME3A LINE L1 -941 5205 5121 7 1060 266 303 0 100 chr4 62340830 62340940 -93289180 + B4A SINE B4 184 282 -10 7 1060 21 0 0 0 chr4 62341018 62341039 -93289081 + AT_rich Low_complexity Low_complexity 1 21 0 7 1060 450 297 25 19 chr4 62341132 62341290 -93288830 - MER2 DNA MER2_type -186 159 1 7 1060 277 323 62 28 chr4 62341290 62341472 -93288648 - L1ME3A LINE L1 -1109 5037 4836 7 1060 267 327 108 6 chr4 62343925 62344091 -93286029 - MIRb SINE MIR -12 256 74 7 1060 264 205 195 22 chr4 62344815 62344907 -93285213 - L1MC2 LINE L1 -7 6337 6227 7 1060 356 323 114 0 chr4 62345641 62345808 -93284312 - MIR SINE MIR -4 258 73 7 1060 456 51 0 0 chr4 62348237 62348296 -93281824 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1060 422 237 10 10 chr4 62348973 62349071 -93281049 - URR1B DNA MER1_type -125 100 3 7 1060 27 0 0 0 chr4 62350068 62350095 -93280025 + AT_rich Low_complexity Low_complexity 1 27 0 7 1060 189 237 0 0 chr4 62351285 62351344 -93278776 + GA-rich Low_complexity Low_complexity 2 60 0 7 1060 429 302 25 8 chr4 62351988 62352108 -93278012 + B4 SINE B4 2 123 -169 7 1060 426 323 77 20 chr4 62352390 62352586 -93277534 - MIR SINE MIR -47 215 9 7 1060 285 326 87 43 chr4 62352739 62352877 -93277243 + MIRm SINE MIR 14 157 -119 7 1060 250 339 25 42 chr4 62353151 62353271 -93276849 - MER117 DNA MER1_type -8 189 72 7 1060 230 315 86 20 chr4 62354141 62354293 -93275827 + MIRb SINE MIR 77 238 -30 7 1060 294 249 142 14 chr4 62354394 62354495 -93275625 - B1F SINE Alu -6 114 9 7 1060 292 264 146 0 chr4 62354628 62354738 -93275382 + MIRb SINE MIR 26 151 -117 7 1060 335 296 51 38 chr4 62355645 62355803 -93274317 + MIR SINE MIR 67 226 -36 7 1060 390 331 49 18 chr4 62355914 62356077 -93274043 - MIR SINE MIR -81 181 14 7 1060 180 0 0 0 chr4 62356548 62356568 -93273552 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 7 1060 564 56 0 0 chr4 62357024 62357096 -93273024 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1060 222 265 71 27 chr4 62359508 62359617 -93270503 - MIRb SINE MIR -53 155 47 7 1060 188 330 125 17 chr4 62359765 62359885 -93270235 - MIRb SINE MIR -31 237 105 7 1060 271 357 62 48 chr4 62361709 62361942 -93268178 - MIRb SINE MIR 0 262 37 7 1060 1126 225 18 36 chr4 62362504 62362785 -93267335 + B4 SINE B4 2 277 -15 7 1060 265 333 86 0 chr4 62364254 62364371 -93265749 - MIRb SINE MIR -116 152 26 7 1060 1339 152 37 0 chr4 62364903 62365120 -93265000 + URR1B DNA MER1_type 1 225 0 7 1060 193 302 69 11 chr4 62366562 62366649 -93263471 + MIR SINE MIR 30 121 -141 7 1060 337 309 40 5 chr4 62368113 62368289 -93261831 + MIRb SINE MIR 10 185 -77 7 1060 295 262 129 15 chr4 62368484 62368616 -93261504 + MIR SINE MIR 34 180 -82 7 1060 460 241 103 22 chr4 62368697 62368833 -93261287 + ID_B1 SINE B4 76 222 -2 7 1060 630 0 0 0 chr4 62368833 62368903 -93261217 + (CAAG)n Simple_repeat Simple_repeat 1 70 0 8 1060 740 243 153 31 chr4 62369405 62369634 -93260486 + B4 SINE B4 32 288 -4 8 1060 744 294 142 46 chr4 62369658 62370038 -93260082 - MLT1J LTR MaLR -10 502 72 8 1060 458 0 35 0 chr4 62370038 62370095 -93260025 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 8 1060 744 294 142 46 chr4 62370095 62370171 -93259949 - MLT1J LTR MaLR -441 71 4 8 1060 488 207 40 33 chr4 62370456 62370606 -93259514 - L1MC4a LINE L1 -2 7880 7730 8 1060 1685 270 83 40 chr4 62370604 62371375 -93258745 - L1MD2 LINE L1 -212 6147 5338 8 1060 505 270 137 78 chr4 62371576 62371819 -93258301 - L1MD2 LINE L1 -864 5282 5024 8 1060 556 253 78 47 chr4 62371819 62372010 -93258110 - B3A SINE B2 -1 197 1 8 1060 505 270 137 78 chr4 62372010 62372152 -93257968 - L1MD2 LINE L1 -1123 5023 4874 8 1060 789 304 129 48 chr4 62372232 62372836 -93257284 - L1MB8 LINE L1 -74 6104 5452 8 1060 307 350 72 6 chr4 62372840 62373021 -93257099 - L1MD2 LINE L1 -1259 4887 4695 8 1060 769 284 88 65 chr4 62373054 62373314 -93256806 - B4A SINE B4 0 292 27 8 1060 39324 5 0 0 chr4 62373314 62379894 -93250226 - L1Md_A LINE L1 -4 6578 1 8 1060 258 32 0 0 chr4 62379960 62379991 -93250129 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 8 1060 756 259 77 0 chr4 62379992 62380162 -93249958 - ID_B1 SINE B4 -8 216 34 8 1060 239 308 0 0 chr4 62380117 62380169 -93249951 - ID4_ SINE ID -6 77 26 8 1060 419 311 142 8 chr4 62380169 62380409 -93249711 - L1MD2 LINE L1 -1448 4698 4427 8 1060 1440 254 70 16 chr4 62380431 62380815 -93249305 - MTD LTR MaLR -14 405 1 8 1060 281 183 155 0 chr4 62380885 62380956 -93249164 - L1M3 LINE L1 -1900 4240 4159 8 1060 391 294 0 29 chr4 62381123 62381378 -93248742 + (TG)n Simple_repeat Simple_repeat 1 247 0 8 1060 258 317 115 76 chr4 62381399 62381556 -93248564 - B4 SINE B4 -4 288 126 8 1060 1611 206 64 36 chr4 62381786 62382144 -93247976 - ORR1D1 LTR MaLR 0 374 7 8 1060 878 148 0 14 chr4 62382153 62382297 -93247823 - B3 SINE B2 -74 142 1 8 1060 378 259 56 0 chr4 62382340 62382448 -93247672 - L1MD2 LINE L1 -2229 3917 3804 8 1060 477 0 0 0 chr4 62382476 62382529 -93247591 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1060 317 297 9 9 chr4 62382529 62382636 -93247484 + (TATG)n Simple_repeat Simple_repeat 3 109 0 8 1060 25 0 0 0 chr4 62382636 62382661 -93247459 + AT_rich Low_complexity Low_complexity 1 25 0 8 1060 252 276 15 0 chr4 62384527 62384603 -93245517 - L2c LINE L2 -228 3159 3080 8 1060 288 296 55 23 chr4 62385185 62385313 -93244807 - MIRb SINE MIR -15 253 122 8 1060 2492 149 147 55 chr4 62386254 62386454 -93243666 - RMER6C LTR ERVK 0 690 496 8 1060 3059 150 116 23 chr4 62386454 62387013 -93243107 + RMER19C LTR ERVK 1 611 0 8 1060 2492 149 147 55 chr4 62387013 62387444 -93242676 - RMER6C LTR ERVK -195 495 1 8 1060 414 0 0 0 chr4 62387562 62387608 -93242512 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1060 315 323 24 8 chr4 62387648 62387773 -93242347 - Charlie23a DNA MER1_type -86 253 127 8 1060 263 184 264 0 chr4 62387905 62387992 -93242128 + MTE2a LTR MaLR 3 112 -267 8 1060 729 243 16 42 chr4 62388002 62388191 -93241929 + B3A SINE B2 15 198 0 8 1060 1042 254 30 26 chr4 62388209 62388480 -93241640 + MTE2a LTR MaLR 108 379 0 8 1061 392 222 26 44 chr4 62390340 62390453 -93239667 - L1MB3 LINE L1 -43 6128 6018 8 1061 425 276 22 59 chr4 62390557 62390692 -93239428 - B1F SINE Alu -7 142 13 8 1061 232 137 39 0 chr4 62390725 62390776 -93239344 + CT-rich Low_complexity Low_complexity 1 53 0 8 1061 442 192 162 0 chr4 62390776 62390875 -93239245 - B1_Mur1 SINE Alu -2 147 33 8 1061 949 275 76 30 chr4 62390936 62391371 -93238749 - L1MB3 LINE L1 -352 5831 5377 8 1061 250 182 15 15 chr4 62391638 62391705 -93238415 + (TATG)n Simple_repeat Simple_repeat 4 70 0 8 1061 851 285 106 42 chr4 62391725 62391989 -93238131 - B4A SINE B4 -11 281 1 8 1061 313 243 0 0 chr4 62392193 62392263 -93237857 + B4A SINE B4 168 237 -55 8 1061 343 258 10 20 chr4 62393184 62393283 -93236837 - MIR3 SINE MIR -49 159 62 8 1061 525 104 0 0 chr4 62394611 62394688 -93235432 + (GA)n Simple_repeat Simple_repeat 1 77 0 8 1061 483 281 137 0 chr4 62394758 62394897 -93235223 + RSINE1 SINE B4 4 161 -4 8 1061 180 0 0 0 chr4 62395038 62395058 -93235062 + (C)n Simple_repeat Simple_repeat 1 20 0 8 1061 369 43 0 0 chr4 62395439 62395486 -93234634 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1061 202 318 0 0 chr4 62395812 62395878 -93234242 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1061 189 0 0 0 chr4 62398861 62398882 -93231238 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1061 234 91 0 0 chr4 62399073 62399106 -93231014 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1061 340 260 20 10 chr4 62399132 62399233 -93230887 - RSINE1 SINE B4 -36 129 28 8 1061 186 233 0 0 chr4 62399338 62399398 -93230722 - MIR SINE MIR -124 144 85 8 1061 397 299 103 6 chr4 62399921 62400086 -93230034 - MER21B LTR ERV1 -112 751 571 8 1061 510 243 18 0 chr4 62400260 62400371 -93229749 + PB1 SINE Alu 1 113 -14 8 1061 194 231 15 0 chr4 62400372 62400437 -93229683 + GA-rich Low_complexity Low_complexity 1 66 0 8 1061 1255 280 79 43 chr4 62400574 62401081 -93229039 + L1MB8 LINE L1 5403 5927 -251 8 1061 997 239 65 77 chr4 62401331 62401671 -93228449 - ORR1C1 LTR MaLR -42 336 1 8 1061 664 234 0 0 chr4 62401689 62401817 -93228303 + B1F SINE Alu 19 146 -3 8 1061 424 231 11 0 chr4 62401958 62402049 -93228071 + Lx7 LINE L1 6731 6822 -874 8 1061 1166 271 68 16 chr4 62402044 62402468 -93227652 + Lx7 LINE L1 6961 7406 -290 8 1061 275 141 16 0 chr4 62402483 62402547 -93227573 + GA-rich Low_complexity Low_complexity 2 66 0 8 1061 642 89 0 0 chr4 62404803 62404893 -93225227 + (TG)n Simple_repeat Simple_repeat 1 90 0 8 1061 384 22 0 0 chr4 62404895 62404940 -93225180 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1061 247 217 16 16 chr4 62404956 62405017 -93225103 - MIRc SINE MIR -134 134 74 8 1061 422 261 94 20 chr4 62405314 62405464 -93224656 + MIRb SINE MIR 10 175 -93 8 1061 911 120 6 0 chr4 62406589 62406747 -93223373 + (TC)n Simple_repeat Simple_repeat 2 160 0 8 1061 423 0 0 0 chr4 62407188 62407235 -93222885 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1061 235 275 160 48 chr4 62407706 62407893 -93222227 - L1M5 LINE L1 -834 5312 5105 8 1061 238 200 18 0 chr4 62407897 62407952 -93222168 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1061 5556 140 37 15 chr4 62408053 62409607 -93220513 - ORR1A2-int LTR MaLR -322 1641 1 8 1061 2546 84 12 0 chr4 62409607 62409930 -93220190 - ORR1A2 LTR MaLR 0 327 1 8 1061 387 0 0 0 chr4 62410071 62410114 -93220006 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1061 305 343 175 27 chr4 62410115 62410512 -93219608 - L1ME2 LINE L1 -281 5883 5427 8 1061 1057 139 32 37 chr4 62410512 62410699 -93219421 - B2_Mm2 SINE B2 -9 186 1 8 1061 305 343 175 27 chr4 62410699 62410849 -93219271 - L1ME2 LINE L1 -738 5426 5255 8 1061 579 307 33 82 chr4 62410985 62411290 -93218830 + B4A SINE B4 3 292 0 8 1061 318 214 0 0 chr4 62411290 62411374 -93218746 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1061 611 247 13 20 chr4 62411447 62411596 -93218524 - ID_B1 SINE B4 0 224 77 8 1061 247 358 138 35 chr4 62411599 62412299 -93217821 - L1ME2 LINE L1 -1138 5008 4225 8 1061 1287 108 0 5 chr4 62412299 62412494 -93217626 - L1_Mus4 LINE L1 -5 6631 6438 8 1061 280 354 121 30 chr4 62412494 62412882 -93217238 - L1ME2 LINE L1 -1922 4224 3808 8 1061 495 0 0 0 chr4 62412966 62413021 -93217099 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 8 1061 229 321 126 21 chr4 62413041 62413232 -93216888 - L1ME2 LINE L1 -3271 2875 2665 8 1061 726 146 41 0 chr4 62413415 62413538 -93216582 + B1_Mur3 SINE Alu 2 129 -20 8 1061 284 48 0 23 chr4 62413562 62413605 -93216515 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 8 1061 459 0 0 0 chr4 62413605 62413656 -93216464 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1061 524 250 167 12 chr4 62413663 62413825 -93216295 - B4A SINE B4 0 292 106 8 1061 508 161 0 0 chr4 62413849 62413936 -93216184 - PB1D10 SINE Alu -10 107 21 8 1061 513 104 0 0 chr4 62413961 62414038 -93216082 + (TCC)n Simple_repeat Simple_repeat 2 78 0 8 1061 241 328 49 18 chr4 62414799 62414939 -93215181 - MIRc SINE MIR -117 159 18 8 1061 232 229 82 0 chr4 62415208 62415269 -93214851 + L2b LINE L2 3279 3344 -31 8 1061 1543 217 133 8 chr4 62415396 62415763 -93214357 - MTD LTR MaLR -3 416 4 8 1061 235 203 32 63 chr4 62417002 62417065 -93213055 - MIR3 SINE MIR -39 169 109 8 1061 288 0 0 0 chr4 62417449 62417481 -93212639 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 1061 279 0 0 0 chr4 62417481 62417511 -93212609 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1061 914 267 57 25 chr4 62417538 62417818 -93212302 - B4A SINE B4 0 292 4 8 1061 243 317 92 18 chr4 62418632 62418796 -93211324 + MIRc SINE MIR 80 255 -13 8 1061 1023 276 44 75 chr4 62419023 62419407 -93210713 + MTE2a LTR MaLR 1 372 -7 8 1061 225 0 0 0 chr4 62419490 62419515 -93210605 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 8 1061 2343 89 9 27 chr4 62420440 62420773 -93209347 - ORR1A2 LTR MaLR 0 327 1 8 1061 722 261 27 97 chr4 62421099 62421358 -93208762 - MTE2b LTR MaLR -131 248 8 8 1061 260 288 250 14 chr4 62421590 62421738 -93208382 + MIR SINE MIR 71 260 -8 8 1061 184 322 144 0 chr4 62422527 62422617 -93207503 + L2c LINE L2 3028 3130 -257 8 1061 495 0 0 0 chr4 62422699 62422754 -93207366 + (CAAAC)n Simple_repeat Simple_repeat 3 57 0 8 1061 247 180 0 0 chr4 62423373 62423423 -93206697 + G-rich Low_complexity Low_complexity 1 50 0 8 1061 773 263 179 9 chr4 62423558 62423877 -93206243 - MTE2b LTR MaLR 0 379 7 8 1061 871 292 9 14 chr4 62424689 62424908 -93205212 - ID_B1 SINE B4 -4 220 3 8 1061 995 89 82 0 chr4 62424940 62425075 -93205045 - B1_Mus2 SINE Alu 0 147 2 8 1061 4605 156 102 13 chr4 62425874 62426707 -93203413 + RMER13B LTR ERVK 1 907 -1 8 1061 445 313 44 126 chr4 62426742 62427155 -93202965 + MTEa LTR MaLR 1 379 0 8 1061 749 231 51 23 chr4 62428348 62428525 -93201595 + ID_B1 SINE B4 26 207 -17 8 1061 332 234 122 23 chr4 62428429 62428560 -93201560 - YREP_Mm Unknown Unknown -1518 294 151 9 1061 565 297 0 26 chr4 62429258 62429410 -93200710 + RSINE1 SINE B4 5 152 -13 9 1061 592 239 123 0 chr4 62429621 62429776 -93200344 + ID_B1 SINE B4 17 190 -34 9 1061 282 275 0 0 chr4 62431308 62431399 -93198721 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 9 1061 657 226 172 25 chr4 62431914 62432118 -93198002 - B4 SINE B4 0 292 59 9 1061 252 86 0 0 chr4 62432161 62432196 -93197924 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1061 1246 54 0 0 chr4 62432196 62432343 -93197777 - B1_Mm SINE Alu 0 147 1 9 1061 467 331 32 0 chr4 62432891 62433048 -93197072 + B4A SINE B4 1 162 -130 9 1061 1174 245 148 37 chr4 62433492 62433869 -93196251 - MTD LTR MaLR 0 419 1 9 1061 585 320 62 68 chr4 62434465 62434820 -93195300 + ORR1E LTR MaLR 1 353 -6 9 1061 1994 165 117 5 chr4 62437385 62437762 -93192358 + MTD LTR MaLR 1 419 0 9 1061 227 268 0 0 chr4 62438234 62438290 -93191830 + MER103 DNA DNA 42 97 -69 9 1061 492 306 52 2 chr4 62441191 62441372 -93188748 - B3A SINE B2 -4 212 21 9 1061 268 330 140 10 chr4 62443858 62444090 -93186030 + MIR SINE MIR 2 260 -8 9 1061 240 358 109 0 chr4 62444433 62444572 -93185548 + MIRc SINE MIR 23 174 -94 9 1061 272 336 70 51 chr4 62444774 62444931 -93185189 + LTR16C LTR ERVL 87 246 -243 9 1061 252 0 0 0 chr4 62445789 62445817 -93184303 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1061 342 228 33 0 chr4 62445853 62445945 -93184175 - Tigger7 DNA MER2_type -104 2387 2293 9 1061 713 43 0 11 chr4 62446328 62446422 -93183698 + (TTC)n Simple_repeat Simple_repeat 3 95 0 9 1061 585 286 92 0 chr4 62447219 62447404 -93182716 + MER3 DNA MER1_type 3 204 -5 9 1061 24 0 0 0 chr4 62447567 62447591 -93182529 + AT_rich Low_complexity Low_complexity 1 24 0 9 1061 675 294 77 0 chr4 62447596 62447790 -93182330 + B4A SINE B4 1 209 -83 9 1061 1214 178 65 4 chr4 62447814 62448045 -93182075 - MTD LTR MaLR -8 411 167 9 1061 345 231 0 13 chr4 62448071 62448150 -93181970 - MTD LTR MaLR -341 78 1 9 1061 220 239 125 14 chr4 62448182 62448254 -93181866 + RSINE1 SINE B4 82 161 -4 9 1061 889 202 209 5 chr4 62449601 62449948 -93180172 - MTD LTR MaLR -10 409 1 9 1061 420 286 7 60 chr4 62449997 62450062 -93180058 + L1M4 LINE L1 5023 5081 -1065 9 1061 1283 106 26 5 chr4 62450062 62450252 -93179868 - B2_Mm2 SINE B2 0 195 2 9 1061 420 286 7 60 chr4 62450252 62450335 -93179785 + L1M4 LINE L1 5082 5163 -983 9 1061 619 288 46 0 chr4 62450337 62450490 -93179630 + B3A SINE B2 1 160 -38 9 1061 189 182 0 0 chr4 62450530 62450585 -93179535 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1061 936 266 137 87 chr4 62450595 62451282 -93178838 - RMER13A LTR ERVK -127 733 13 9 1061 3381 38 5 2 chr4 62451560 62451955 -93178165 + MTA_Mm LTR MaLR 1 396 0 9 1061 407 239 0 0 chr4 62451996 62452084 -93178036 + L1M4 LINE L1 5040 5127 -1019 9 1061 1443 248 53 14 chr4 62452556 62452912 -93177208 - MTEa LTR MaLR -9 370 1 9 1061 183 42 0 0 chr4 62453526 62453550 -93176570 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1061 206 32 32 0 chr4 62453574 62453605 -93176515 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 9 1061 420 292 23 15 chr4 62454770 62454902 -93175218 - MER5B DNA MER1_type -30 148 16 9 1061 268 111 0 36 chr4 62455351 62455407 -93174713 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1061 278 322 86 33 chr4 62455585 62455922 -93174198 + L1M5 LINE L1 4973 5327 -819 9 1061 790 232 13 13 chr4 62455928 62456081 -93174039 + RSINE1 SINE B4 3 155 -10 9 1061 585 0 0 0 chr4 62456087 62456152 -93173968 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 1061 368 333 112 59 chr4 62456157 62456479 -93173641 + L1M5 LINE L1 5318 5656 -468 9 1061 1066 232 119 3 chr4 62456480 62456808 -93173312 + ORR1D2 LTR MaLR 1 366 -4 9 1061 497 292 26 33 chr4 62456899 62457051 -93173069 - RSINE1 SINE B4 -4 161 11 9 1061 1293 173 4 22 chr4 62457112 62457342 -93172778 - URR1A DNA MER1_type 0 226 1 9 1061 1865 185 27 52 chr4 62457710 62458115 -93172005 + RMER10B LTR ERVL 4 398 0 9 1061 566 234 150 91 chr4 62458936 62458974 -93171146 + B4 SINE B4 5 32 -260 9 1061 1192 43 0 0 chr4 62458974 62459113 -93171007 + B1_Mm SINE Alu 1 139 -8 9 1061 315 0 0 0 chr4 62459113 62459148 -93170972 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 1061 566 234 150 91 chr4 62459148 62459362 -93170758 + B4 SINE B4 33 272 -20 9 1061 270 302 11 34 chr4 62459644 62459733 -93170387 + MIR SINE MIR 7 93 -169 9 1061 248 128 0 0 chr4 62459943 62459982 -93170138 - U2 snRNA snRNA -149 39 1 9 1061 268 252 51 59 chr4 62460385 62460503 -93169617 + MLT2B4 LTR ERVL 300 416 -140 9 1061 318 244 45 8 chr4 62460548 62460680 -93169440 + (TCTA)n Simple_repeat Simple_repeat 1 137 0 9 1061 231 36 0 0 chr4 62460682 62460710 -93169410 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1061 321 312 17 59 chr4 62460711 62460830 -93169290 - RSINE1 SINE B4 -41 124 11 9 1061 459 0 0 0 chr4 62460831 62460882 -93169238 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1061 276 53 0 0 chr4 62462584 62462622 -93167498 + (CAA)n Simple_repeat Simple_repeat 1 38 0 9 1061 1251 34 7 0 chr4 62462627 62462773 -93167347 + B1_Mus1 SINE Alu 1 147 -1 9 1061 194 152 17 0 chr4 62462773 62462832 -93167288 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 9 1061 265 185 197 15 chr4 62463136 62463268 -93166852 + Lx9 LINE L1 7489 7644 0 9 1061 2058 113 3 104 chr4 62463562 62463926 -93166194 + ORR1A4 LTR MaLR 1 327 -2 9 1061 321 304 170 17 chr4 62464264 62464505 -93165615 - Charlie24 DNA MER1_type -1624 826 549 9 1061 309 252 108 47 chr4 62465151 62465280 -93164840 - MLT1A1 LTR MaLR -4 404 268 9 1061 360 286 92 8 chr4 62465390 62465510 -93164610 - MTEa LTR MaLR 0 370 241 9 1061 655 266 7 0 chr4 62465526 62465669 -93164451 - MTEa LTR MaLR -164 215 72 9 1061 327 25 0 0 chr4 62465926 62465966 -93164154 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1061 336 83 0 0 chr4 62466172 62466220 -93163900 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 9 1061 1077 97 32 0 chr4 62466221 62466376 -93163744 - B2_Mm2 SINE B2 -35 160 1 9 1061 237 208 45 125 chr4 62466588 62466676 -93163444 - MIR SINE MIR -126 136 56 9 1061 533 303 46 51 chr4 62467249 62467444 -93162676 - MTEa LTR MaLR -122 257 64 9 1061 233 315 164 35 chr4 62467315 62467486 -93162634 - MLT2B3 LTR ERVL -386 331 139 9 1061 268 316 79 0 chr4 62467533 62467647 -93162473 - MLT2B3 LTR ERVL -430 124 2 9 1061 234 0 0 0 chr4 62468395 62468421 -93161699 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1061 1419 0 0 0 chr4 62468830 62468992 -93161128 + L1Md_T LINE L1 6421 6582 0 9 1061 365 289 269 0 chr4 62469045 62469246 -93160874 - RMER15 LTR ERVL -46 529 275 9 1061 867 234 24 33 chr4 62469594 62469806 -93160314 + MTD LTR MaLR 1 210 -209 9 1061 1097 84 0 7 chr4 62469806 62469949 -93160171 + B1_Mus2 SINE Alu 1 142 -5 9 1061 454 120 0 32 chr4 62469973 62470068 -93160052 + GA-rich Low_complexity Low_complexity 2 93 0 9 1061 555 211 224 37 chr4 62470073 62470263 -93159857 + MTD LTR MaLR 195 405 -14 9 1061 300 333 58 11 chr4 62470402 62470593 -93159527 + L1M3 LINE L1 3949 4148 -1998 9 1061 725 217 56 0 chr4 62470628 62470808 -93159312 - L1MA8 LINE L1 0 6291 6102 9 1061 1026 296 90 47 chr4 62470825 62471314 -93158806 + Lx9 LINE L1 6961 7470 -174 9 1061 2531 162 5 7 chr4 62471420 62471842 -93158278 - MTC LTR MaLR 0 421 1 9 1061 427 175 25 0 chr4 62471875 62471955 -93158165 - L1MA8 LINE L1 -151 6140 6059 9 1061 810 278 111 63 chr4 62471972 62472556 -93157564 + L1M3 LINE L1 4148 4759 -1381 9 1061 519 179 38 60 chr4 62472572 62472756 -93157364 + Lx9 LINE L1 7465 7644 0 9 1061 387 0 0 0 chr4 62472826 62472869 -93157251 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1061 287 250 0 0 chr4 62472882 62472934 -93157186 - ID4_ SINE ID -30 53 2 9 1061 231 223 28 138 chr4 62472959 62473068 -93157052 + L1M3 LINE L1 4887 4983 -1163 9 1061 1065 209 90 35 chr4 62473907 62474367 -93155753 + RMER1B Other Other 746 1062 -4 9 1061 1111 221 19 23 chr4 62474344 62474604 -93155516 + Lx7 LINE L1 6892 7150 -546 9 1061 341 300 0 0 chr4 62474731 62474821 -93155299 + Lx7 LINE L1 7154 7243 -453 9 1061 659 218 29 52 chr4 62474829 62475042 -93155078 - Lx2B LINE L1 -2 6998 6803 9 1061 477 0 0 0 chr4 62475092 62475145 -93154975 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1061 510 218 38 90 chr4 62475152 62475364 -93154756 + Lx7 LINE L1 7356 7556 -140 9 1061 191 309 124 0 chr4 62475645 62475742 -93154378 + MIR SINE MIR 33 141 -67 9 1061 536 274 27 20 chr4 62475867 62476016 -93154104 + RSINE1 SINE B4 3 152 -13 9 1061 305 318 18 0 chr4 62476229 62476339 -93153781 + L1ME4a LINE L1 6013 6124 0 9 1061 207 0 0 0 chr4 62476953 62476976 -93153144 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1061 1687 210 13 0 chr4 62477083 62477397 -93152723 - Lx9 LINE L1 -673 6971 6654 9 1061 296 256 22 0 chr4 62477424 62477514 -93152606 - Lx9 LINE L1 -1247 6397 6306 9 1061 1893 220 17 25 chr4 62477574 62478152 -93151968 - Lx9 LINE L1 -1538 6106 5501 9 1061 437 268 27 0 chr4 62478163 62478275 -93151845 - RSINE1 SINE B4 -50 115 1 9 1061 24 32 0 0 chr4 62478382 62478413 -93151707 + AT_rich Low_complexity Low_complexity 1 31 0 9 1061 755 303 169 53 chr4 62478451 62479190 -93150930 - L1M4 LINE L1 -5263 1279 455 9 1061 1078 192 5 5 chr4 62479200 62479394 -93150726 - URR1A DNA MER1_type -1 225 32 9 1061 343 262 108 23 chr4 62479530 62479659 -93150461 - L1M4 LINE L1 -6282 260 121 9 1061 336 180 16 0 chr4 62479673 62479734 -93150386 + MTE2b LTR MaLR 259 320 -59 9 1061 41 0 0 0 chr4 62479772 62479813 -93150307 + AT_rich Low_complexity Low_complexity 1 41 0 9 1061 298 261 144 55 chr4 62480908 62481054 -93149066 - RLTR14 LTR ERV1 0 382 224 9 1061 392 316 86 13 chr4 62481575 62481617 -93148503 - B4 SINE B4 -22 270 113 9 1061 527 191 114 0 chr4 62481617 62481722 -93148398 - B1_Mur2 SINE Alu -5 144 28 9 1061 280 296 95 34 chr4 62481716 62481863 -93148257 + YREP_Mm Unknown Unknown 141 296 -1516 1 1061 680 205 51 43 chr4 62481753 62481891 -93148229 - ID_B1 SINE B4 -6 218 80 1 1061 1475 230 52 0 chr4 62481932 62482241 -93147879 + MER2 DNA MER2_type 7 331 -14 1 1061 180 0 0 0 chr4 62482823 62482843 -93147277 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1061 503 259 9 0 chr4 62483142 62483254 -93146866 - PB1D10 SINE Alu 0 117 5 1 1061 862 150 6 6 chr4 62483370 62483538 -93146582 + CT-rich Low_complexity Low_complexity 3 170 0 1 1061 387 0 0 0 chr4 62483542 62483585 -93146535 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1061 864 290 22 44 chr4 62484329 62484603 -93145517 - B4 SINE B4 -19 273 6 1 1061 772 311 6 21 chr4 62485190 62485409 -93144711 - B3A SINE B2 -1 215 1 1 1061 438 221 47 54 chr4 62485425 62485554 -93144566 - MIR SINE MIR -71 191 64 1 1061 282 278 193 24 chr4 62486596 62486762 -93143358 + L2a LINE L2 2743 2936 -483 1 1061 196 294 114 85 chr4 62486823 62487094 -93143026 + L2a LINE L2 3048 3326 -100 1 1061 325 216 148 0 chr4 62488148 62488236 -93141884 + PB1D10 SINE Alu 17 117 0 1 1061 1801 147 187 14 chr4 62488687 62489046 -93141074 + MTC LTR MaLR 1 421 0 1 1061 243 170 0 0 chr4 62489601 62489648 -93140472 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1 1061 585 42 0 0 chr4 62489999 62490071 -93140049 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1061 254 243 14 28 chr4 62490877 62490949 -93139171 + MTE2a LTR MaLR 295 365 -14 1 1061 696 253 13 0 chr4 62491358 62491508 -93138612 + B3A SINE B2 2 153 -45 1 1061 468 0 0 0 chr4 62491543 62491595 -93138525 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1061 339 386 145 19 chr4 62491680 62491997 -93138123 - L1M5 LINE L1 -1209 5005 4649 1 1061 189 0 0 0 chr4 62491997 62492018 -93138102 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 1061 1300 298 58 97 chr4 62492020 62492741 -93137379 + L1MC LINE L1 3410 4127 -2019 1 1061 243 0 0 0 chr4 62492741 62492768 -93137352 + (TGGGGG)n Simple_repeat Simple_repeat 6 32 0 1 1061 1300 298 58 97 chr4 62492768 62493027 -93137093 + L1MC LINE L1 4128 4352 -1794 1 1061 8286 66 10 2 chr4 62493101 62494245 -93135875 - L1_Mus4 LINE L1 -6 6630 5478 1 1061 423 347 130 39 chr4 62494282 62494776 -93135344 - L1M5 LINE L1 -2235 3979 3441 1 1061 200 119 0 67 chr4 62494846 62494891 -93135229 + T-rich Low_complexity Low_complexity 1 42 0 1 1061 497 276 39 0 chr4 62495296 62495423 -93134697 - RSINE1 SINE B4 -28 137 6 1 1061 365 253 0 90 chr4 62495428 62495528 -93134592 - ID_B1 SINE B4 0 224 134 1 1061 238 310 99 0 chr4 62495748 62495819 -93134301 - PB1D7 SINE Alu -7 113 36 1 1061 1024 149 32 22 chr4 62496085 62496270 -93133850 - ORR1B1 LTR MaLR -80 314 128 1 1061 370 319 62 67 chr4 62496280 62496458 -93133662 - B4A SINE B4 -114 178 2 1 1061 1972 159 42 14 chr4 62496474 62496831 -93133289 - ORR1B2 LTR MaLR 0 367 1 1 1061 276 285 104 46 chr4 62496945 62497118 -93133002 - L1M5 LINE L1 -3855 2360 2178 1 1061 866 238 46 31 chr4 62497326 62497521 -93132599 - ID_B1 SINE B4 -1 223 26 1 1061 476 275 138 0 chr4 62497553 62497713 -93132407 + MER2 DNA MER2_type 159 340 -5 1 1061 426 20 0 0 chr4 62498583 62498634 -93131486 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1061 710 128 0 13 chr4 62498718 62498868 -93131252 + (AGGGGG)n Simple_repeat Simple_repeat 5 152 0 1 1061 801 235 78 0 chr4 62499178 62499382 -93130738 - Tigger1 DNA MER2_type -8 2410 2191 1 1061 706 75 252 13 chr4 62499464 62499611 -93130509 + B2_Mm2 SINE B2 10 191 -4 1 1061 378 346 73 30 chr4 62499718 62499882 -93130238 + MLT1N2 LTR MaLR 95 265 -297 1 1061 214 250 0 0 chr4 62500580 62500620 -93129500 + B4A SINE B4 6 45 -247 1 1061 783 83 0 0 chr4 62500621 62500729 -93129391 + (CA)n Simple_repeat Simple_repeat 2 109 0 2 1061 892 236 11 6 chr4 62500729 62500908 -93129212 + B4A SINE B4 89 268 -24 1 1061 368 219 0 24 chr4 62500956 62501040 -93129080 + ID4_ SINE ID 2 83 0 3 1061 1086 270 108 13 chr4 62501057 62501650 -93128470 + L1MC3 LINE L1 6854 7503 -282 4 1061 289 347 40 0 chr4 62501881 62501956 -93128164 + RSINE1 SINE B4 59 136 -29 5 1061 231 284 63 69 chr4 62501997 62502156 -93127964 + L1ME3A LINE L1 1500 1657 -4976 6 1061 556 302 0 55 chr4 62502174 62502356 -93127764 + B3A SINE B2 10 181 -17 7 1061 396 0 0 0 chr4 62502356 62502400 -93127720 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 8 1061 393 210 31 4 chr4 62502416 62502506 -93127614 + B3A SINE B2 2 106 -92 9 1061 360 0 0 0 chr4 62502526 62502566 -93127554 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1061 624 285 81 86 chr4 62502602 62503104 -93127016 + L1ME3A LINE L1 3327 3848 -2686 6 1061 243 329 0 116 chr4 62503132 62503218 -93126902 - ID4 SINE ID -3 80 5 1 1061 424 252 0 121 chr4 62503229 62503369 -93126751 - PB1 SINE Alu 0 127 5 1 1061 203 189 0 0 chr4 62504018 62504055 -93126065 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1061 609 234 0 8 chr4 62504066 62504191 -93125929 + RSINE1 SINE B4 3 126 -39 1 1061 305 279 80 85 chr4 62504191 62504218 -93125902 + B2_Mm2 SINE B2 2 158 -37 1 1061 438 69 0 0 chr4 62504218 62504276 -93125844 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1061 324 0 0 0 chr4 62504276 62504311 -93125809 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1061 305 279 80 85 chr4 62504311 62504345 -93125775 + B2_Mm2 SINE B2 159 187 -8 1 1061 434 314 19 24 chr4 62504619 62504839 -93125281 + L1ME3A LINE L1 4868 5086 -1451 6 1061 310 275 128 48 chr4 62504919 62505106 -93125014 + L1ME3A LINE L1 6074 6275 -289 6 1061 426 326 122 20 chr4 62505115 62505257 -93124863 + RSINE1 SINE B4 4 160 -5 1 1061 443 18 18 0 chr4 62505257 62505313 -93124807 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1061 250 299 75 14 chr4 62505467 62505613 -93124507 + L1ME3A LINE L1 6414 6568 -63 6 1061 23 0 0 0 chr4 62505641 62505664 -93124456 + AT_rich Low_complexity Low_complexity 1 23 0 2 1061 189 171 0 0 chr4 62506603 62506638 -93123482 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2 1061 837 196 0 0 chr4 62506718 62506930 -93123190 + CT-rich Low_complexity Low_complexity 1 212 0 2 1061 1155 82 0 0 chr4 62506931 62507078 -93123042 - B1_Mus1 SINE Alu -1 147 1 2 1061 463 301 143 27 chr4 62507854 62508113 -93122007 + B4A SINE B4 4 292 0 2 1061 320 232 26 32 chr4 62508114 62508270 -93121850 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 1061 208 329 14 0 chr4 62508291 62508361 -93121759 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1061 1984 142 45 102 chr4 62508538 62509007 -93121113 - RMER10A LTR ERVL 0 442 1 2 1061 382 114 22 0 chr4 62509094 62509161 -93120959 + ORR1B1 LTR MaLR 1 70 -304 2 1061 361 129 14 14 chr4 62509440 62509511 -93120609 + CT-rich Low_complexity Low_complexity 2 72 0 2 1061 674 129 119 16 chr4 62509551 62509677 -93120443 - B1_Mus1 SINE Alu 0 148 10 2 1061 705 247 35 46 chr4 62509823 62509997 -93120123 + MTEa LTR MaLR 4 175 -204 3 1061 504 305 169 46 chr4 62510895 62511308 -93118812 - MLT1E2 LTR MaLR -163 464 1 3 1061 821 271 20 30 chr4 62511871 62512069 -93118051 + B3A SINE B2 1 196 -2 3 1061 206 235 20 0 chr4 62512086 62512137 -93117983 + GA-rich Low_complexity Low_complexity 2 53 0 3 1061 808 267 107 38 chr4 62512541 62512868 -93117252 - Charlie8 DNA MER1_type -2090 338 13 3 1061 224 293 25 74 chr4 62513024 62513105 -93117015 + B3A SINE B2 6 82 -116 3 1061 676 293 55 13 chr4 62513070 62513305 -93116815 + B4A SINE B4 48 292 0 3 1061 360 0 0 0 chr4 62513343 62513383 -93116737 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1061 708 12 0 0 chr4 62513384 62513465 -93116655 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 1061 1805 146 89 22 chr4 62513853 62514211 -93115909 + ORR1C2 LTR MaLR 3 384 0 3 1061 643 260 81 6 chr4 62514451 62514625 -93115495 + B3A SINE B2 1 187 -11 4 1061 715 308 19 5 chr4 62514793 62515005 -93115115 + ID_B1 SINE B4 4 218 -6 4 1061 261 0 0 0 chr4 62515051 62515080 -93115040 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1061 538 235 107 16 chr4 62515080 62515201 -93114919 - B1_Mur2 SINE Alu -10 139 8 4 1061 464 219 36 45 chr4 62515656 62515766 -93114354 + PB1D10 SINE Alu 1 109 -8 4 1061 573 258 0 0 chr4 62515669 62515801 -93114319 + ID_B1 SINE B4 91 222 -2 4 1061 504 0 0 0 chr4 62516733 62516789 -93113331 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1061 452 239 97 48 chr4 62516799 62516944 -93113176 - B4A SINE B4 -29 263 112 4 1061 333 0 0 0 chr4 62518781 62518818 -93111302 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1061 216 0 0 0 chr4 62518818 62518841 -93111279 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1061 225 0 0 0 chr4 62518841 62518865 -93111255 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1061 242 248 68 150 chr4 62519012 62519159 -93110961 + MT2A LTR ERVL 1 135 -398 5 1061 608 253 299 11 chr4 62519044 62519328 -93110792 + MTD LTR MaLR 42 407 -12 5 1061 287 299 85 23 chr4 62519399 62519529 -93110591 + MLT1H LTR MaLR 16 153 -396 5 1061 266 287 22 33 chr4 62519538 62519628 -93110492 + MLT1H LTR MaLR 497 585 -6 5 1061 224 197 27 40 chr4 62519757 62519831 -93110289 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 5 1061 4298 176 53 205 chr4 62519832 62521045 -93109075 - RMER1A Other Other -38 1028 1 5 132 1061 72 43 0 chr4 62521299 62521438 -93108682 + B1_Mus2 SINE Alu 2 146 -1 5 1062 226 229 0 0 chr4 62521441 62521502 -93108618 + A-rich Low_complexity Low_complexity 6 66 0 5 1062 292 133 16 16 chr4 62521792 62521853 -93108267 + CT-rich Low_complexity Low_complexity 2 62 0 5 1062 345 216 54 43 chr4 62522191 62522283 -93107837 - MLT1B LTR MaLR 0 467 375 5 1062 732 276 7 13 chr4 62522432 62522586 -93107534 - RSINE1 SINE B4 -9 156 4 6 1062 499 246 63 0 chr4 62522650 62522792 -93107328 - MLT1B LTR MaLR -239 151 1 5 1062 294 271 71 45 chr4 62522920 62523032 -93107088 + MIR SINE MIR 116 230 -32 6 1062 558 148 0 0 chr4 62523521 62523622 -93106498 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 1062 703 0 11 11 chr4 62523622 62523710 -93106410 + (GAA)n Simple_repeat Simple_repeat 3 90 0 6 1062 232 303 40 10 chr4 62524798 62524898 -93105222 - MIR SINE MIR -41 221 119 6 1062 3230 16 0 8 chr4 62524899 62525269 -93104851 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1062 27685 19 1 3 chr4 62525269 62528353 -93101767 - IAPEz-int LTR ERVK 0 6481 3405 6 1062 6218 91 49 83 chr4 62528340 62529555 -93100565 - IAPEz-int LTR ERVK -5439 1042 3 6 1062 3230 16 0 8 chr4 62529557 62529927 -93100193 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1062 282 266 113 15 chr4 62530090 62530241 -93099879 - MIRc SINE MIR -92 176 9 6 1062 190 312 125 0 chr4 62530483 62530627 -93099493 - MIR SINE MIR -80 182 21 6 1062 351 0 0 0 chr4 62531227 62531266 -93098854 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1062 459 0 0 0 chr4 62531266 62531316 -93098804 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1062 566 232 6 0 chr4 62532096 62532260 -93097860 + CT-rich Low_complexity Low_complexity 4 168 0 7 1062 546 249 171 0 chr4 62532277 62532458 -93097662 - ID_B1 SINE B4 -12 212 1 7 1062 364 291 43 6 chr4 62533138 62533268 -93096852 + MIRb SINE MIR 18 151 -57 7 1062 268 276 85 47 chr4 62534130 62534259 -93095861 + MIR SINE MIR 56 196 -72 7 1062 834 259 57 19 chr4 62534288 62534497 -93095623 + B4A SINE B4 1 217 -75 7 1062 281 340 10 10 chr4 62534561 62534665 -93095455 + CT-rich Low_complexity Low_complexity 2 105 0 7 1062 188 296 117 42 chr4 62535605 62535725 -93094395 - MIR SINE MIR -102 160 32 7 1062 495 0 0 0 chr4 62535734 62535789 -93094331 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1062 387 0 0 0 chr4 62535789 62535831 -93094289 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1062 405 0 0 0 chr4 62536352 62536397 -93093723 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1062 362 233 31 96 chr4 62536847 62537016 -93093104 + MLT1A1 LTR MaLR 203 408 0 8 1062 338 247 52 0 chr4 62537120 62537197 -93092923 + B4A SINE B4 1 81 -211 8 1062 251 86 0 0 chr4 62537268 62537303 -93092817 + B4A SINE B4 193 227 -65 8 1062 508 285 84 19 chr4 62537303 62537457 -93092663 + RSINE1 SINE B4 2 165 0 8 1062 232 244 0 0 chr4 62537460 62537505 -93092615 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1062 276 30 0 0 chr4 62537602 62537635 -93092485 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1062 2479 65 3 64 chr4 62537635 62537979 -93092141 + ORR1A2 LTR MaLR 5 327 0 8 1062 306 0 0 0 chr4 62537980 62538014 -93092106 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1062 499 289 72 7 chr4 62538017 62538170 -93091950 - B3A SINE B2 -27 171 9 8 1062 415 209 126 54 chr4 62538722 62538833 -93091287 + RSINE1 SINE B4 16 134 -31 8 1062 387 0 0 0 chr4 62538836 62538879 -93091241 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 9 1062 192 97 0 0 chr4 62538882 62538913 -93091207 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1062 267 254 15 0 chr4 62539358 62539425 -93090695 - BC1_Mm scRNA scRNA -59 93 26 9 1062 375 247 0 73 chr4 62539448 62539544 -93090576 - PB1D10 SINE Alu -8 109 21 9 1062 226 341 112 52 chr4 62540197 62540429 -93089691 - ORR1E LTR MaLR -54 305 60 9 1062 208 350 48 19 chr4 62540579 62540684 -93089436 - MIRb SINE MIR -46 222 115 9 1062 260 267 35 0 chr4 62540804 62540890 -93089230 + MIRc SINE MIR 77 165 -103 9 1062 946 266 101 30 chr4 62541481 62541818 -93088302 + MLT2D LTR ERVL 6 366 -48 9 1062 1390 276 40 50 chr4 62541853 62542276 -93087844 + MTD LTR MaLR 1 419 0 9 1062 317 324 43 35 chr4 62542546 62542687 -93087433 - MLT1A0 LTR MaLR 0 365 224 9 1062 1656 21 16 0 chr4 62543144 62543334 -93086786 + B2_Mm1a SINE B2 1 193 0 1 1062 199 376 31 80 chr4 62543842 62543911 -93086209 + L3 LINE CR1 4267 4333 -156 1 1062 859 89 7 15 chr4 62543911 62544047 -93086073 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 1 1062 199 376 31 80 chr4 62544047 62544139 -93085981 + L3 LINE CR1 4334 4420 -69 1 1062 187 125 100 0 chr4 62545182 62545222 -93084898 - MIR3 SINE MIR -54 154 111 1 1062 185 385 53 27 chr4 62545823 62546010 -93084110 + MIRc SINE MIR 46 237 -31 1 1062 287 259 58 74 chr4 62546424 62546545 -93083575 - MLT1K LTR MaLR -91 504 386 1 1062 415 275 109 16 chr4 62546731 62546979 -93083141 + L1MB7 LINE L1 4284 4554 -1592 1 1062 3263 108 58 26 chr4 62547062 62547564 -93082556 + Lx LINE L1 6129 6646 -8 1 1062 459 0 0 0 chr4 62547564 62547615 -93082505 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 1 1062 2236 187 32 12 chr4 62547663 62548074 -93082046 - MTC LTR MaLR 0 421 3 1 1062 288 271 80 29 chr4 62548088 62548225 -93081895 + L1MB7 LINE L1 4778 4921 -1225 1 1062 891 234 17 0 chr4 62548237 62548412 -93081708 + ID_B1 SINE B4 34 211 -13 1 1062 563 273 148 23 chr4 62548426 62548771 -93081349 + L1MB7 LINE L1 4907 5294 -852 1 1062 413 259 112 24 chr4 62549104 62549310 -93080810 + L1MB7 LINE L1 5960 6183 -1 1 1062 327 309 46 38 chr4 62550679 62550810 -93079310 + MIRc SINE MIR 85 216 -52 1 1062 229 325 36 0 chr4 62551251 62551334 -93078786 + MIRm SINE MIR 30 115 -161 1 1062 451 286 225 21 chr4 62551513 62551749 -93078371 - B4A SINE B4 -4 288 5 1 1062 196 285 59 4 chr4 62551985 62552087 -93078033 - MIRb SINE MIR -72 196 84 1 1062 324 250 0 54 chr4 62552546 62552639 -93077481 + MIR SINE MIR 59 146 -62 1 1062 630 0 0 0 chr4 62552744 62552814 -93077306 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1062 549 228 0 0 chr4 62553247 62553339 -93076781 + RSINE1 SINE B4 5 96 -69 1 1062 350 317 26 78 chr4 62553467 62553561 -93076559 - ID_B1 SINE B4 -1 223 136 1 1062 1855 179 87 40 chr4 62553561 62553962 -93076158 - MTC LTR MaLR 0 421 2 1 1062 439 311 15 29 chr4 62553962 62554003 -93076117 - B1F1 SINE Alu -92 57 15 1 1062 350 317 26 78 chr4 62554003 62554021 -93076099 - ID_B1 SINE B4 -89 135 78 1 1062 254 143 0 20 chr4 62554091 62554141 -93075979 + GA-rich Low_complexity Low_complexity 4 52 0 1 1062 296 286 193 72 chr4 62554145 62554352 -93075768 - Charlie4a DNA MER1_type -248 260 29 1 1062 941 222 69 0 chr4 62554553 62554756 -93075364 + B4 SINE B4 1 217 -75 1 1062 385 292 6 35 chr4 62554829 62554997 -93075123 + B4 SINE B4 3 161 -4 1 1062 342 0 0 0 chr4 62554999 62555037 -93075083 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1062 306 0 0 0 chr4 62555037 62555070 -93075050 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1062 319 324 135 70 chr4 62555357 62556369 -93073751 + L1M4 LINE L1 3129 4206 -1940 1 1062 617 229 41 14 chr4 62556408 62556554 -93073566 + B3A SINE B2 3 152 -46 1 1062 6099 56 21 1 chr4 62556666 62557414 -93072706 - L1Md_F3 LINE L1 -1 6583 5821 1 1062 924 65 0 8 chr4 62557500 62557624 -93072496 + B1_Mur4 SINE Alu 15 137 -13 1 1062 219 69 0 0 chr4 62557628 62557657 -93072463 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1062 1646 316 104 43 chr4 62557678 62558457 -93071663 - L1M2 LINE L1 -692 5492 4621 1 1062 675 146 430 0 chr4 62558457 62558608 -93071512 + B3 SINE B2 1 216 0 1 1062 1646 316 89 37 chr4 62558608 62559461 -93070659 - L1M2 LINE L1 -1516 4627 3695 1 1062 192 77 0 0 chr4 62559468 62559494 -93070626 + (CGA)n Simple_repeat Simple_repeat 2 27 0 1 1062 551 27 0 14 chr4 62559495 62559569 -93070551 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1062 498 270 63 35 chr4 62559573 62559715 -93070405 - RSINE1 SINE B4 -18 147 2 1 1062 300 53 0 0 chr4 62559739 62559777 -93070343 + (TGG)n Simple_repeat Simple_repeat 3 40 0 1 1062 396 292 0 10 chr4 62559779 62559876 -93070244 - RSINE1 SINE B4 -17 148 53 1 1062 411 92 0 0 chr4 62560676 62560741 -93069379 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1062 333 0 0 0 chr4 62561401 62561438 -93068682 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1062 226 231 19 0 chr4 62562732 62562784 -93067336 + L1MEe LINE L1 1491 1543 -4953 1 1062 337 273 79 53 chr4 62562847 62563070 -93067050 + L1MEe LINE L1 2262 2485 -3935 1 1062 238 200 250 15 chr4 62563226 62563284 -93066836 - RMER17C LTR ERVK -136 274 217 1 1062 528 45 0 0 chr4 62563284 62563351 -93066769 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1062 238 200 250 15 chr4 62563351 62563424 -93066696 - RMER17C LTR ERVK -194 216 112 1 1062 237 266 116 11 chr4 62563652 62563747 -93066373 + L1MEc LINE L1 809 913 -5487 1 1062 396 0 0 0 chr4 62563838 62563882 -93066238 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1062 270 0 0 0 chr4 62563886 62563916 -93066204 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1062 330 259 76 0 chr4 62563930 62564061 -93066059 + L1MEc LINE L1 1041 1181 -5219 1 1062 291 236 0 0 chr4 62564181 62564253 -93065867 + GA-rich Low_complexity Low_complexity 3 74 0 1 1062 305 282 132 38 chr4 62564253 62564541 -93065579 + L1MEc LINE L1 1479 1793 -4622 1 1062 564 71 0 88 chr4 62564550 62564720 -93065400 + CT-rich Low_complexity Low_complexity 3 157 0 1 1062 778 231 0 0 chr4 62564720 62564867 -93065253 + B3A SINE B2 1 147 -51 1 1062 638 105 9 0 chr4 62564867 62564972 -93065148 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1062 221 122 49 0 chr4 62564981 62565022 -93065098 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1062 298 257 144 6 chr4 62565036 62565216 -93064904 + L1MEc LINE L1 1783 1987 -4413 1 1062 937 194 134 0 chr4 62565396 62565582 -93064538 + B3 SINE B2 2 212 -4 1 1062 1179 257 81 27 chr4 62565631 62566190 -93063930 + L1MEc LINE L1 2924 3512 -2807 1 1062 512 276 14 14 chr4 62566197 62566344 -93063776 + B4A SINE B4 1 147 -145 1 1062 387 113 0 0 chr4 62566420 62566482 -93063638 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1062 225 200 75 30 chr4 62566524 62566591 -93063529 + L1MEc LINE L1 3555 3624 -2695 1 1062 313 157 37 64 chr4 62566976 62567085 -93063035 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1062 236 175 15 31 chr4 62567565 62567591 -93062529 + T-rich Low_complexity Low_complexity 41 67 0 1 1062 234 0 0 0 chr4 62567591 62567617 -93062503 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1 1062 236 175 15 31 chr4 62567617 62567655 -93062465 + T-rich Low_complexity Low_complexity 5 40 0 1 1062 22 0 0 0 chr4 62568025 62568047 -93062073 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 270 287 36 27 chr4 62568205 62568316 -93061804 + B3A SINE B2 87 198 0 1 1062 251 232 88 25 chr4 62568404 62568416 -93061704 + L1MB7 LINE L1 4817 4829 -1048 1 1062 701 214 63 25 chr4 62568416 62568574 -93061546 - RSINE1 SINE B4 0 165 2 1 1062 594 237 95 21 chr4 62568574 62568781 -93061339 + L1MB7 LINE L1 4830 5097 -1049 1 1062 684 247 55 88 chr4 62568790 62568972 -93061148 + B3A SINE B2 1 176 -19 1 1062 1414 269 91 43 chr4 62568972 62569746 -93060374 + L1MB7 LINE L1 5189 6001 -183 1 1062 270 217 0 134 chr4 62569781 62569983 -93060137 + G-rich Low_complexity Low_complexity 2 176 0 1 1062 447 251 34 45 chr4 62570128 62570239 -93059881 + L1MB7 LINE L1 5989 6103 -81 1 1062 285 51 0 0 chr4 62570239 62570278 -93059842 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1062 447 251 34 45 chr4 62570278 62570345 -93059775 + L1MB7 LINE L1 6104 6165 -19 1 1062 192 70 70 0 chr4 62570459 62570502 -93059618 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1062 805 210 133 0 chr4 62570515 62570696 -93059424 + B3 SINE B2 5 209 -7 1 1062 248 345 44 11 chr4 62570818 62570909 -93059211 + B4A SINE B4 50 143 -149 1 1062 201 39 0 0 chr4 62570909 62570935 -93059185 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 1 1062 1709 123 35 91 chr4 62570977 62571317 -93058803 - ORR1A4 LTR MaLR -8 321 1 1 1062 662 45 22 0 chr4 62571506 62571595 -93058525 + (TTCTC)n Simple_repeat Simple_repeat 4 94 0 1 1062 28 29 0 0 chr4 62571959 62571994 -93058126 + AT_rich Low_complexity Low_complexity 1 35 0 1 1062 24 0 0 0 chr4 62572707 62572731 -93057389 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 22 35 0 0 chr4 62573514 62573543 -93056577 + AT_rich Low_complexity Low_complexity 1 29 0 1 1062 1193 198 14 5 chr4 62573996 62574209 -93055911 - B3 SINE B2 0 216 2 1 1062 29 28 0 0 chr4 62574214 62574250 -93055870 + AT_rich Low_complexity Low_complexity 1 36 0 1 1062 444 19 0 0 chr4 62574250 62574303 -93055817 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1062 246 333 99 0 chr4 62574303 62574384 -93055736 - RSINE1 SINE B4 -48 117 29 1 1062 1140 270 42 105 chr4 62574852 62575374 -93054746 - Charlie1b DNA MER1_type -3 520 32 1 1062 420 20 0 0 chr4 62575776 62575825 -93054295 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1062 617 301 101 76 chr4 62575883 62576160 -93053960 + B4A SINE B4 9 292 0 1 1062 311 346 75 25 chr4 62576644 62576884 -93053236 + L1M5 LINE L1 4883 5134 -1012 1 1062 222 269 14 14 chr4 62577033 62577114 -93053006 + ID4_ SINE ID 1 81 -2 1 1062 477 0 0 0 chr4 62577318 62577371 -93052749 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1062 472 269 12 113 chr4 62577374 62577542 -93052578 - RSINE1 SINE B4 -12 153 3 1 1062 503 167 0 0 chr4 62577879 62577957 -93052163 + MTC LTR MaLR 1 78 -343 1 1062 1824 169 59 76 chr4 62577960 62578369 -93051751 - RLTR9D LTR ERVK -1 402 1 1 1062 287 164 101 29 chr4 62578370 62578439 -93051681 - ETnERV2-int LTR ERVK -2 7404 7331 1 1062 9778 148 57 30 chr4 62578623 62582403 -93047717 - ETnERV2-int LTR ERVK -981 6425 726 1 1062 537 44 0 0 chr4 62582403 62582471 -93047649 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 1 1062 6489 246 50 3392 chr4 62582471 62582794 -93047326 - ETnERV2-int LTR ERVK -6324 1082 1078 1 1062 1830 176 65 21 chr4 62582801 62583185 -93046935 - RLTR9D LTR ERVK -2 401 1 1 1062 1160 82 7 27 chr4 62583213 62583363 -93046757 + B1_Mus1 SINE Alu 2 148 0 1 1062 1494 155 140 4 chr4 62583385 62583664 -93046456 + MTC LTR MaLR 105 421 0 1 1062 2278 204 72 92 chr4 62583812 62584521 -93045599 - RMER6D LTR ERVK 0 720 26 1 1062 221 292 92 41 chr4 62584819 62584949 -93045171 - MIR SINE MIR -138 138 1 1 1062 832 252 0 18 chr4 62585946 62586112 -93044008 + RSINE1 SINE B4 2 164 -1 1 1062 309 151 0 0 chr4 62586113 62586166 -93043954 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1062 38796 30 0 0 chr4 62586187 62592885 -93037235 - L1Md_T LINE L1 0 6585 1 1 1062 785 304 95 62 chr4 62593306 62594179 -93035941 - L1MEf LINE L1 -1561 4585 3684 1 1062 234 0 0 0 chr4 62594179 62594205 -93035915 + (TTC)n Simple_repeat Simple_repeat 3 28 0 1 1062 435 38 0 0 chr4 62594205 62594258 -93035862 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1062 1125 92 7 0 chr4 62594285 62594427 -93035693 - B1_Mus1 SINE Alu -5 143 1 1 1062 447 250 164 0 chr4 62594502 62594630 -93035490 + B1F SINE Alu 1 149 0 2 1062 245 298 46 81 chr4 62594666 62594925 -93035195 - L1MEf LINE L1 -2567 3579 3330 1 1062 383 309 72 12 chr4 62594977 62595144 -93034976 - B3A SINE B2 -17 181 5 2 1062 732 268 21 43 chr4 62595258 62595445 -93034675 - B3A SINE B2 0 198 16 2 1062 180 0 0 0 chr4 62595502 62595522 -93034598 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1062 887 301 59 18 chr4 62595636 62596028 -93034092 - L1MEf LINE L1 -3132 3014 2607 1 1062 300 53 0 0 chr4 62596675 62596713 -93033407 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1062 309 315 31 115 chr4 62596717 62596943 -93033177 - L1MEf LINE L1 -4547 1695 1489 1 1062 1056 279 20 79 chr4 62597084 62597387 -93032733 - B4A SINE B4 -1 291 7 2 1062 196 360 49 20 chr4 62598306 62598408 -93031712 - MIR SINE MIR -71 137 33 2 1062 24 53 0 0 chr4 62598611 62598649 -93031471 + AT_rich Low_complexity Low_complexity 1 38 0 2 1062 1347 176 23 0 chr4 62599384 62599605 -93030515 + URR1A DNA MER1_type 1 226 0 2 1062 1435 248 64 11 chr4 62599705 62600064 -93030056 + MTE2b LTR MaLR 2 379 0 2 1062 200 111 28 0 chr4 62601722 62601758 -93028362 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1062 1085 285 14 45 chr4 62601997 62602284 -93027836 + B4A SINE B4 2 279 -13 2 1062 783 272 64 64 chr4 62602572 62602637 -93027483 - B4 SINE B4 -24 268 212 2 1062 1512 88 16 0 chr4 62602637 62602829 -93027291 - B2_Mm2 SINE B2 0 195 1 2 1062 783 272 64 64 chr4 62602829 62602959 -93027161 - B4 SINE B4 -81 211 90 2 1062 324 0 0 0 chr4 62602959 62602995 -93027125 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1062 783 272 64 64 chr4 62602995 62603065 -93027055 - B4 SINE B4 -203 89 5 2 1062 627 257 82 20 chr4 62604093 62604240 -93025880 + B4 SINE B4 135 290 -2 2 1062 291 292 101 25 chr4 62604420 62604604 -93025516 + MLT1H2 LTR MaLR 71 319 -230 2 1062 219 114 0 0 chr4 62604800 62604835 -93025285 + (CAGAA)n Simple_repeat Simple_repeat 2 36 0 2 1062 720 89 0 0 chr4 62604835 62604936 -93025184 + (GAGAA)n Simple_repeat Simple_repeat 5 105 0 2 1062 309 26 0 0 chr4 62605041 62605079 -93025041 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1062 201 156 0 0 chr4 62605080 62605112 -93025008 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 2 1062 4051 162 62 26 chr4 62605204 62605985 -93024135 - RMER1A Other Other -10 1020 248 2 1062 366 308 47 27 chr4 62605996 62606146 -93023974 + MIR SINE MIR 31 183 -79 2 1062 1956 241 106 37 chr4 62606177 62606874 -93023246 - L1MA8 LINE L1 -7 6284 5540 2 1062 1087 87 0 7 chr4 62606886 62607037 -93023083 - B2_Mm2 SINE B2 -30 165 16 2 1062 1534 282 21 2 chr4 62607074 62607773 -93022347 - L1MA8 LINE L1 -733 5558 4837 2 1062 1282 42 0 0 chr4 62608617 62608759 -93021361 + B1_Mus1 SINE Alu 1 142 -6 2 1062 531 112 0 0 chr4 62608765 62608863 -93021257 + (CTAA)n Simple_repeat Simple_repeat 3 100 0 2 1062 595 354 34 30 chr4 62609189 62609454 -93020666 - MLT1G LTR MaLR -8 583 318 2 1062 2413 147 84 8 chr4 62609548 62609939 -93020181 + MTC LTR MaLR 1 421 0 2 1062 284 351 92 110 chr4 62609952 62610204 -93019916 - MLT1G LTR MaLR -183 377 139 2 1062 2195 150 67 28 chr4 62610288 62610563 -93019557 - MTC LTR MaLR -10 411 131 2 1062 1745 135 174 16 chr4 62610563 62610880 -93019240 - ORR1B2 LTR MaLR 0 367 1 2 1062 2195 150 67 28 chr4 62610880 62610995 -93019125 - MTC LTR MaLR -291 130 6 2 1062 5926 184 98 21 chr4 62611001 62612170 -93017950 - MTC-int LTR MaLR 0 1258 1 2 1062 1479 197 12 16 chr4 62612170 62612545 -93017575 - MTC LTR MaLR -2 419 1 2 1062 796 228 54 11 chr4 62612638 62612824 -93017296 - MTD LTR MaLR 0 419 226 2 1062 363 44 0 0 chr4 62613052 62613097 -93017023 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1062 636 288 25 6 chr4 62613145 62613306 -93016814 - MTD LTR MaLR -213 206 43 2 1062 238 311 11 43 chr4 62613389 62613483 -93016637 - MER94 DNA AcHobo -1 133 43 2 1062 259 301 8 81 chr4 62613741 62613864 -93016256 - MLT1K LTR MaLR -123 472 359 2 1062 881 282 130 34 chr4 62613823 62614146 -93015974 + MTEa LTR MaLR 18 371 -8 2 1062 344 335 180 18 chr4 62614153 62614381 -93015739 - MLT1K LTR MaLR -210 385 121 2 1062 439 303 53 131 chr4 62614417 62614828 -93015292 - MTEa LTR MaLR 0 379 1 2 1062 241 339 93 63 chr4 62615085 62615290 -93014830 - MLT1H LTR MaLR 0 549 339 2 1062 852 173 0 13 chr4 62615419 62615563 -93014557 + B1_Mur4 SINE Alu 1 143 -7 2 1062 336 24 0 0 chr4 62615563 62615604 -93014516 + (CCTA)n Simple_repeat Simple_repeat 3 43 0 2 1062 319 279 47 28 chr4 62615628 62615735 -93014385 - MLT1K LTR MaLR -391 158 50 2 1062 1604 156 112 83 chr4 62615991 62616414 -93013706 - RMER16 LTR ERVK 0 533 5 2 1062 496 208 43 157 chr4 62616418 62616688 -93013432 + L1MB4 LINE L1 5623 5861 -483 2 1062 1174 57 0 0 chr4 62616706 62616846 -93013274 + B1_Mus1 SINE Alu 1 140 -8 2 1062 279 0 0 0 chr4 62616846 62616877 -93013243 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1062 613 278 171 13 chr4 62617205 62617515 -93012605 + L1MB3 LINE L1 5824 6182 -1 2 1062 477 0 0 0 chr4 62617941 62617994 -93012126 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1062 358 88 29 0 chr4 62618490 62618558 -93011562 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1062 233 237 0 50 chr4 62618659 62618739 -93011381 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 2 1062 1081 95 12 6 chr4 62618961 62619130 -93010990 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 2 1062 749 273 58 0 chr4 62619132 62619337 -93010783 - ID_B1 SINE B4 -7 217 1 2 1062 25 0 0 0 chr4 62619339 62619364 -93010756 + AT_rich Low_complexity Low_complexity 1 25 0 2 1062 454 199 239 58 chr4 62619403 62619545 -93010575 - B3A SINE B2 -15 183 13 2 1062 4459 121 56 10 chr4 62619545 62620265 -93009855 - RMER6A LTR ERVK -3 753 1 2 1062 454 199 239 58 chr4 62620265 62620277 -93009843 - B3A SINE B2 -186 12 1 2 1062 812 152 0 7 chr4 62620548 62620700 -93009420 + (TCCA)n Simple_repeat Simple_repeat 4 154 0 2 1062 410 333 13 25 chr4 62620700 62620857 -93009263 - MIR SINE MIR -107 155 1 2 1062 279 175 35 0 chr4 62621831 62621888 -93008232 + MIRc SINE MIR 118 176 -92 2 1062 307 217 0 30 chr4 62622588 62622721 -93007399 + CT-rich Low_complexity Low_complexity 4 132 0 2 1062 709 311 13 35 chr4 62622833 62623063 -93007057 - B4 SINE B4 0 292 68 2 1062 255 357 79 8 chr4 62624606 62624733 -93005387 + MER5A DNA MER1_type 1 136 -53 2 1062 186 43 0 0 chr4 62625849 62625872 -93004248 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1062 26 30 0 0 chr4 62626349 62626382 -93003738 + GC_rich Low_complexity Low_complexity 1 33 0 2 1062 241 210 40 48 chr4 62626391 62626516 -93003604 + (CGCGG)n Simple_repeat Simple_repeat 4 127 0 2 1062 55 16 0 0 chr4 62626525 62626587 -93003533 + GC_rich Low_complexity Low_complexity 1 62 0 2 1062 285 98 0 0 chr4 62626595 62626636 -93003484 + (CGG)n Simple_repeat Simple_repeat 3 43 0 2 1062 299 223 6 81 chr4 62626747 62626908 -93003212 + G-rich Low_complexity Low_complexity 3 151 0 2 1062 25 31 0 0 chr4 62626924 62626956 -93003164 + GC_rich Low_complexity Low_complexity 1 32 0 2 1062 234 0 0 0 chr4 62627164 62627190 -93002930 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1062 31 68 0 0 chr4 62627287 62627346 -93002774 + AT_rich Low_complexity Low_complexity 1 59 0 2 1062 268 24 49 0 chr4 62627963 62628004 -93002116 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1062 21 57 0 0 chr4 62629000 62629035 -93001085 + AT_rich Low_complexity Low_complexity 1 35 0 2 1062 38 0 0 0 chr4 62629295 62629333 -93000787 + AT_rich Low_complexity Low_complexity 1 38 0 2 1062 200 188 0 0 chr4 62629775 62629807 -93000313 + polypyrimidine Low_complexity Low_complexity 3 34 0 2 1062 549 260 10 78 chr4 62631571 62631763 -92998357 - MER33 DNA MER1_type 0 324 146 2 1062 234 0 0 0 chr4 62631855 62631881 -92998239 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1062 314 80 20 0 chr4 62632203 62632253 -92997867 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1062 217 263 29 95 chr4 62632536 62632641 -92997479 + MIRb SINE MIR 88 185 -83 2 1062 182 37 0 36 chr4 62632877 62632905 -92997215 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1062 389 262 93 9 chr4 62633151 62633259 -92996861 + L2c LINE L2 3261 3377 -10 2 1062 255 277 108 0 chr4 62633263 62633346 -92996774 - MARNA DNA Mariner -249 337 246 2 1062 297 0 0 0 chr4 62633566 62633599 -92996521 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1062 468 0 0 0 chr4 62633599 62633650 -92996470 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1062 836 289 43 11 chr4 62633671 62633947 -92996173 - B4A SINE B4 -6 286 2 2 1062 410 304 118 67 chr4 62634001 62634219 -92995901 - B4 SINE B4 -51 241 7 2 1062 325 209 0 37 chr4 62634674 62634783 -92995337 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1062 312 24 0 47 chr4 62634790 62634833 -92995287 - HAL1-3A_ME LINE L1 -846 2012 1972 2 1062 380 293 435 19 chr4 62634842 62635044 -92995076 - B4A SINE B4 0 292 7 2 1062 458 307 100 22 chr4 62635627 62635807 -92994313 - MER117 DNA MER1_type 0 197 4 2 1062 301 266 65 72 chr4 62635831 62635969 -92994151 - MIR SINE MIR -55 153 17 2 1062 275 294 108 24 chr4 62637418 62637585 -92992535 + MER33 DNA MER1_type 72 252 -72 2 1062 339 96 0 0 chr4 62637637 62637689 -92992431 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1062 1073 253 49 8 chr4 62637700 62637963 -92992157 - B4 SINE B4 -11 281 8 2 1062 248 298 0 0 chr4 62639031 62639100 -92991020 - MIRb SINE MIR -11 251 183 2 1062 302 350 26 83 chr4 62639141 62639181 -92990939 - B3A SINE B2 -16 182 1 2 1062 427 295 46 26 chr4 62639181 62639334 -92990786 - B4A SINE B4 -136 156 1 2 1062 216 339 68 25 chr4 62639341 62639459 -92990661 - MIRb SINE MIR -112 156 34 2 1062 189 289 43 86 chr4 62639904 62640044 -92990076 + MIRc SINE MIR 12 145 -123 2 1062 551 262 24 97 chr4 62640322 62640529 -92989591 - MLT1F LTR MaLR 0 548 357 2 1062 260 278 27 107 chr4 62640650 62640799 -92989321 - ORR1A3-int LTR MaLR -247 1716 1580 2 1062 195 298 84 35 chr4 62640820 62640921 -92989199 - MIRb SINE MIR -139 129 19 2 1062 735 44 0 0 chr4 62641079 62641170 -92988950 + (TCCA)n Simple_repeat Simple_repeat 2 92 0 2 1062 330 317 112 26 chr4 62641242 62641458 -92988662 - MIRc SINE MIR -38 230 8 3 1062 396 246 113 65 chr4 62641536 62641766 -92988354 - L1ME4a LINE L1 -2 6122 5882 3 1062 676 191 0 49 chr4 62642128 62642271 -92987849 - RSINE1 SINE B4 -28 137 2 3 1062 227 277 168 11 chr4 62642293 62642388 -92987732 - PB1D10 SINE Alu 0 117 8 3 1062 450 0 0 0 chr4 62642397 62642447 -92987673 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1062 310 237 81 20 chr4 62642669 62642768 -92987352 + L1MB2 LINE L1 5190 5294 -849 3 1062 598 236 24 0 chr4 62642786 62642909 -92987211 + ID_B1 SINE B4 91 216 -8 3 1062 276 224 0 0 chr4 62642914 62642981 -92987139 + GA-rich Low_complexity Low_complexity 2 68 0 3 1062 256 329 94 6 chr4 62643020 62643191 -92986929 + L1MB2 LINE L1 5261 5446 -722 3 1062 217 151 0 36 chr4 62643212 62643267 -92986853 + GA-rich Low_complexity Low_complexity 4 56 0 3 1062 322 218 113 28 chr4 62643414 62643683 -92986437 + L1MB2 LINE L1 5766 6135 -36 3 1062 1415 68 16 10 chr4 62644161 62644353 -92985767 - B2_Mm2 SINE B2 -2 193 1 3 1062 338 277 9 122 chr4 62644383 62644498 -92985622 + PB1D7 SINE Alu 2 103 -17 3 1062 1168 68 7 0 chr4 62645105 62645251 -92984869 - B1_Mus1 SINE Alu 0 148 2 3 1062 342 256 0 0 chr4 62645445 62645527 -92984593 - ID4 SINE ID 0 83 2 3 1062 390 268 19 107 chr4 62645536 62645695 -92984425 - B1F SINE Alu -2 147 3 3 1062 508 236 148 14 chr4 62646117 62646378 -92983742 - L1M5 LINE L1 -2201 3945 3663 3 1062 1571 42 16 0 chr4 62646942 62647132 -92982988 - B2_Mm2 SINE B2 -2 193 1 3 1062 586 239 70 59 chr4 62647156 62647343 -92982777 - B3A SINE B2 -7 191 3 3 1062 384 216 11 46 chr4 62647533 62647631 -92982489 - PB1D7 SINE Alu 0 127 33 3 1062 327 298 133 72 chr4 62647713 62647977 -92982143 - L1M5 LINE L1 -3393 2753 2474 3 1062 398 264 118 0 chr4 62648620 62648730 -92981390 + ID_B1 SINE B4 86 208 -16 3 1062 800 212 79 0 chr4 62648846 62649035 -92981085 - B3 SINE B2 -5 211 8 3 1062 1015 245 88 88 chr4 62649115 62649535 -92980585 + MT2A LTR ERVL 3 554 -47 3 1062 513 84 0 0 chr4 62649541 62649612 -92980508 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 3 1062 794 153 13 71 chr4 62649668 62649823 -92980297 + MTC LTR MaLR 1 146 -275 3 1062 783 224 6 13 chr4 62649819 62649977 -92980143 + MTC LTR MaLR 265 421 0 3 1062 1777 151 66 43 chr4 62649977 62650321 -92979799 + ORR1C2 LTR MaLR 32 383 -1 3 1062 282 253 51 0 chr4 62651131 62651210 -92978910 - L1MB2 LINE L1 -9 6162 6080 3 1062 1178 258 77 26 chr4 62651239 62651617 -92978503 - L1MB2 LINE L1 -174 5997 5601 3 1062 492 18 0 0 chr4 62651865 62651922 -92978198 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 3 1062 802 53 0 18 chr4 62651924 62652038 -92978082 + (TTCCC)n Simple_repeat Simple_repeat 1 112 0 3 1062 1104 6 0 91 chr4 62652057 62652255 -92977865 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1062 378 0 0 0 chr4 62652260 62652302 -92977818 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1063 269 216 0 0 chr4 62654013 62654064 -92976056 + MER46C DNA MER2_type 279 329 -9 3 1063 863 194 33 223 chr4 62654471 62654729 -92975391 - B4A SINE B4 0 292 101 3 1063 568 248 77 39 chr4 62654729 62654884 -92975236 - RSINE1 SINE B4 0 165 5 3 1063 863 194 33 223 chr4 62654884 62654984 -92975136 - B4A SINE B4 -192 100 2 3 1063 1099 64 43 0 chr4 62655223 62655363 -92974757 - B1_Mus1 SINE Alu -2 146 1 3 1063 313 286 247 5 chr4 62655641 62655831 -92974289 - L1MEc LINE L1 -5432 968 733 3 1063 320 206 26 52 chr4 62655831 62655908 -92974212 - MLT1D LTR MaLR 0 505 431 3 1063 1109 244 146 39 chr4 62656142 62656505 -92973615 + MTD LTR MaLR 18 419 0 3 1063 1015 260 24 83 chr4 62656819 62657108 -92973012 + B4A SINE B4 1 272 -20 3 1063 232 250 0 37 chr4 62658115 62658169 -92971951 + B1F SINE Alu 2 53 -96 3 1063 2148 178 64 0 chr4 62658341 62658729 -92971391 - MTC LTR MaLR -8 413 1 3 1063 368 195 12 49 chr4 62658731 62658812 -92971308 + ID4 SINE ID 6 83 0 3 1063 381 318 224 0 chr4 62659605 62659869 -92970251 - L1MEc LINE L1 -5942 458 136 3 1063 226 289 186 24 chr4 62660604 62660728 -92969392 - MLT1K LTR MaLR -120 475 332 3 1063 425 266 93 8 chr4 62661528 62661657 -92968463 + RSINE1 SINE B4 12 151 -14 3 1063 723 228 124 32 chr4 62662259 62662447 -92967673 - ORSL DNA Tip100 -3 272 66 3 1063 297 0 0 0 chr4 62662447 62662480 -92967640 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1063 723 228 124 32 chr4 62662480 62662540 -92967580 - ORSL DNA Tip100 -210 65 2 3 1063 215 321 0 100 chr4 62663035 62663125 -92966995 - ID2 SINE ID 0 83 3 3 1063 430 216 3 36 chr4 62664208 62664517 -92965603 + CT-rich Low_complexity Low_complexity 1 298 0 3 1063 226 295 0 45 chr4 62664586 62664696 -92965424 + CT-rich Low_complexity Low_complexity 1 105 0 3 1063 203 273 43 64 chr4 62665258 62665352 -92964768 - MER5A DNA MER1_type -6 183 92 3 1063 190 333 56 0 chr4 62665957 62666047 -92964073 + MIR SINE MIR 41 135 -73 3 1063 222 305 39 16 chr4 62666952 62667057 -92963063 - L2a LINE L2 -18 3408 3249 3 1063 180 77 0 0 chr4 62667542 62667568 -92962552 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1063 569 203 22 52 chr4 62667619 62667754 -92962366 - Charlie22a DNA MER1_type -67 424 294 3 1063 421 261 47 35 chr4 62668971 62669142 -92960978 - L1MC4a LINE L1 -6 7876 7704 3 1063 266 260 91 0 chr4 62669150 62669227 -92960893 - MER46C DNA MER2_type -11 327 244 3 1063 786 277 68 40 chr4 62669297 62669545 -92960575 - B4 SINE B4 -10 282 28 3 1063 189 0 0 0 chr4 62669625 62669646 -92960474 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 1063 520 287 178 20 chr4 62669719 62670342 -92959778 - L1MC4 LINE L1 -284 7758 7014 3 1063 245 293 106 72 chr4 62670376 62670556 -92959564 - RLTR25B LTR ERVK -402 626 441 3 1063 1008 97 20 14 chr4 62670448 62670594 -92959526 - B1_Mm SINE Alu 0 147 1 3 1063 195 347 52 10 chr4 62670719 62670815 -92959305 + L2a LINE L2 3322 3421 -5 3 1063 384 22 0 0 chr4 62671315 62671360 -92958760 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1063 195 344 52 30 chr4 62672250 62672385 -92957735 + MIR SINE MIR 118 255 -7 3 1063 1090 195 0 70 chr4 62673098 62673341 -92956779 - URR1A DNA MER1_type 0 226 1 3 1063 2158 263 119 37 chr4 62674073 62675115 -92955005 - L1MCa LINE L1 -1198 5366 4240 3 1063 258 200 36 0 chr4 62675114 62675169 -92954951 + Lx8 LINE L1 7415 7471 -2 3 1063 934 281 109 39 chr4 62675197 62676048 -92954072 - L1MCa LINE L1 -3191 3373 2485 3 1063 610 237 71 33 chr4 62676422 62676662 -92953458 - L1MCa LINE L1 -4628 2123 1875 3 1063 471 78 0 0 chr4 62676662 62676726 -92953394 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 3 1063 574 234 0 46 chr4 62676863 62676993 -92953127 - B1F2 SINE Alu -8 141 18 3 1063 237 326 43 57 chr4 62676883 62677023 -92953097 - MT2B LTR ERVL -323 278 141 3 1063 666 264 50 66 chr4 62677055 62677461 -92952659 - L1MCa LINE L1 -4921 1830 1427 3 1063 3589 15 2 0 chr4 62677461 62677856 -92952264 + MTA_Mm LTR MaLR 1 396 0 3 1063 9282 36 4 1 chr4 62677856 62678951 -92951169 + MTA_Mm-int LTR MaLR 1 1098 0 3 1063 3562 18 2 0 chr4 62678951 62679346 -92950774 + MTA_Mm LTR MaLR 1 396 0 3 1063 666 264 50 66 chr4 62679346 62679379 -92950741 - L1MCa LINE L1 -5325 1426 1398 3 1063 495 292 51 0 chr4 62679398 62679535 -92950585 - ID_B1 SINE B4 -75 149 6 3 1063 661 278 75 5 chr4 62679602 62679790 -92950330 - B4A SINE B4 -8 284 84 3 1063 374 270 63 0 chr4 62679881 62679992 -92950128 - RSINE1 SINE B4 -24 141 24 3 1063 451 229 0 12 chr4 62680012 62680096 -92950024 - B4A SINE B4 -207 85 3 3 1063 306 200 149 163 chr4 62680113 62680401 -92949719 - L1MCa LINE L1 -5512 1239 868 3 1063 1173 248 31 28 chr4 62681336 62681626 -92948494 - B4A SINE B4 0 292 2 3 1063 1113 36 0 14 chr4 62681957 62682098 -92948022 - B1_Mm SINE Alu 0 147 9 3 1063 448 183 23 135 chr4 62681986 62682119 -92948001 - MT2B LTR ERVL -325 276 159 3 1063 274 270 134 32 chr4 62682168 62682325 -92947795 - L1MCa LINE L1 -5782 969 797 3 1063 476 220 161 14 chr4 62682679 62682822 -92947298 - B3 SINE B2 -11 205 42 3 1063 198 0 0 0 chr4 62682827 62682849 -92947271 + (CAGCC)n Simple_repeat Simple_repeat 5 26 0 3 1063 310 299 89 68 chr4 62682923 62683318 -92946802 - L1MCb LINE L1 -5343 1408 1006 3 1063 362 57 19 0 chr4 62683461 62683514 -92946606 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 1063 331 313 136 35 chr4 62683514 62683683 -92946437 - L1MCb LINE L1 -5247 798 613 3 1063 324 264 38 3 chr4 62684956 62685073 -92945047 - L2b LINE L2 -322 3104 2983 3 1063 257 304 231 19 chr4 62685829 62686201 -92943919 - L2b LINE L2 -1661 1758 1308 3 1063 187 184 53 0 chr4 62688034 62688072 -92942048 + L2b LINE L2 3332 3371 -4 3 1063 561 147 0 0 chr4 62688322 62688431 -92941689 + (TC)n Simple_repeat Simple_repeat 1 109 0 3 1063 264 103 17 33 chr4 62688881 62688941 -92941179 + T-rich Low_complexity Low_complexity 2 60 0 3 1063 256 282 13 0 chr4 62689440 62689518 -92940602 - L1MC4 LINE L1 -198 7844 7766 3 1063 322 293 0 26 chr4 62690271 62690282 -92939838 - ID SINE ID -139 85 11 3 1063 337 246 0 15 chr4 62690282 62690348 -92939772 - ID4_ SINE ID -8 75 11 3 1063 315 347 86 7 chr4 62690940 62691152 -92938968 - L1M4 LINE L1 -2576 3570 3342 3 1063 332 318 149 45 chr4 62691454 62691698 -92938422 - L1M4 LINE L1 -3302 2844 2570 3 1063 216 0 0 0 chr4 62691880 62691904 -92938216 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1063 336 257 0 0 chr4 62694677 62694747 -92935373 + B1F SINE Alu 71 140 -9 3 1063 340 281 12 0 chr4 62695080 62695162 -92934958 - MER33 DNA MER1_type -4 320 238 3 1063 667 298 31 24 chr4 62695192 62695446 -92934674 - MER33 DNA MER1_type -68 256 1 3 1063 254 118 39 0 chr4 62696268 62696319 -92933801 + AmnSINE1 SINE SINE 521 573 -2 3 1063 300 349 23 38 chr4 62696621 62696752 -92933368 - MIR3 SINE MIR -7 201 73 3 1063 438 248 155 62 chr4 62701244 62701373 -92928747 - ID_B1 SINE B4 -72 152 12 3 1063 315 261 138 21 chr4 62701781 62701875 -92928245 + B3 SINE B2 1 105 -111 3 1063 298 279 279 0 chr4 62701933 62702037 -92928083 - RSINE1 SINE B4 -31 134 2 3 1063 588 29 0 0 chr4 62702510 62702580 -92927540 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 3 1063 36034 74 12 1 chr4 62702594 62708710 -92921410 - L1Md_F2 LINE L1 -2 6580 395 3 1063 324 347 127 20 chr4 62710540 62710784 -92919336 + LTR33A LTR ERVL 40 309 -211 3 1063 502 122 0 47 chr4 62710909 62710995 -92919125 + B1_Mur3 SINE Alu 68 149 0 3 1063 385 133 0 26 chr4 62711008 62711085 -92919035 + GA-rich Low_complexity Low_complexity 2 76 0 4 1063 231 61 0 0 chr4 62711270 62711303 -92918817 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1063 582 15 0 0 chr4 62711646 62711713 -92918407 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1063 509 285 36 0 chr4 62711941 62712078 -92918042 - MER117 DNA MER1_type -55 142 1 4 1063 201 333 95 27 chr4 62712347 62712421 -92917699 - MIR3 SINE MIR -21 187 109 4 1063 535 208 9 0 chr4 62712476 62712582 -92917538 - PB1D10 SINE Alu -9 108 2 4 1063 425 304 134 12 chr4 62712626 62712853 -92917267 - MIR SINE MIR 0 268 11 4 1063 181 324 15 0 chr4 62713001 62713069 -92917051 - MIRm SINE MIR -117 159 91 4 1063 218 136 0 22 chr4 62713702 62713747 -92916373 + C-rich Low_complexity Low_complexity 5 48 0 4 1063 180 333 45 0 chr4 62714123 62714189 -92915931 - MIRc SINE MIR -68 200 132 4 1063 432 0 0 0 chr4 62715233 62715281 -92914839 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1063 351 306 294 41 chr4 62716106 62716718 -92913402 + L2a LINE L2 2566 3330 -96 4 1063 212 292 0 0 chr4 62717188 62717236 -92912884 + MIRm SINE MIR 216 263 -13 4 1063 958 257 71 29 chr4 62717287 62717567 -92912553 + B4A SINE B4 1 292 0 4 1063 282 116 0 0 chr4 62718542 62718585 -92911535 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 1063 396 143 0 0 chr4 62718600 62718670 -92911450 + (T)n Simple_repeat Simple_repeat 1 70 0 4 1063 797 241 53 15 chr4 62720468 62720674 -92909446 + B3 SINE B2 2 215 -1 4 1063 786 282 140 56 chr4 62723775 62724132 -92905988 - MTD LTR MaLR -15 404 18 4 1063 316 312 42 7 chr4 62724317 62724459 -92905661 - MIR3 SINE MIR -8 200 54 4 1063 222 209 33 0 chr4 62724624 62724685 -92905435 - L2b LINE L2 -24 3402 3289 4 1063 521 290 21 21 chr4 62725215 62725356 -92904764 + B1F SINE Alu 1 141 -8 4 1063 1186 164 22 14 chr4 62725438 62725660 -92904460 - URR1B DNA MER1_type 0 225 2 4 1063 207 0 0 0 chr4 62726544 62726567 -92903553 + (TCCA)n Simple_repeat Simple_repeat 4 26 0 4 1063 582 306 276 38 chr4 62726569 62727080 -92903040 - L2a LINE L2 0 3426 2795 4 1063 587 241 33 24 chr4 62727358 62727522 -92902598 - MTEa LTR MaLR -2 417 251 4 1063 206 163 23 0 chr4 62727688 62727731 -92902389 + (CTTG)n Simple_repeat Simple_repeat 4 47 0 4 1063 183 326 20 0 chr4 62727897 62727946 -92902174 + L2b LINE L2 3314 3363 -12 4 1063 642 296 44 48 chr4 62729229 62729456 -92900664 - MER2 DNA MER2_type -18 327 102 4 1063 447 113 0 0 chr4 62729460 62729531 -92900589 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1063 224 200 22 0 chr4 62731276 62731321 -92898799 + MIRb SINE MIR 36 81 -187 4 1063 327 248 175 7 chr4 62732066 62732220 -92897900 - L2a LINE L2 -27 3399 3220 4 1063 415 153 42 0 chr4 62732796 62732868 -92897252 + PB1D10 SINE Alu 41 115 -2 4 1063 316 335 71 94 chr4 62734370 62734594 -92895526 + MER44B DNA MER2_type 1 219 -331 4 1063 546 154 45 30 chr4 62734604 62734874 -92895246 + (TATATG)n Simple_repeat Simple_repeat 1 273 0 4 1063 428 134 51 22 chr4 62734885 62735022 -92895098 + (TATATG)n Simple_repeat Simple_repeat 5 145 0 4 1063 347 258 133 0 chr4 62735022 62735142 -92894978 + MER44B DNA MER2_type 212 347 -203 4 1063 267 326 33 11 chr4 62735303 62735393 -92894727 - MLT1A LTR MaLR -31 359 268 4 1063 715 272 19 43 chr4 62735640 62735851 -92894269 + B4A SINE B4 7 212 -80 4 1063 225 0 0 0 chr4 62735936 62735961 -92894159 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 4 1063 1391 60 32 21 chr4 62736047 62736235 -92893885 + B2_Mm2 SINE B2 2 191 -4 4 1063 22 56 0 0 chr4 62736845 62736881 -92893239 + AT_rich Low_complexity Low_complexity 1 36 0 4 1063 2429 120 197 66 chr4 62738062 62738579 -92891541 - RMER4B LTR ERVK 0 585 1 4 1063 293 316 13 21 chr4 62739000 62739125 -92890995 - MLT1A1 LTR MaLR 0 408 246 4 1063 305 363 65 20 chr4 62739170 62739358 -92890762 - MIRb SINE MIR -37 231 21 4 1063 522 289 16 8 chr4 62739453 62739582 -92890538 - RSINE1 SINE B4 -33 132 3 4 1063 519 321 19 13 chr4 62739590 62739748 -92890372 - MLT1A LTR MaLR -215 159 1 4 1063 454 350 101 41 chr4 62742477 62742843 -92887277 - MLT1I LTR MaLR -7 404 17 4 1063 190 118 39 19 chr4 62744537 62744589 -92885531 + T-rich Low_complexity Low_complexity 2 54 0 4 1063 1852 270 92 44 chr4 62746130 62746839 -92883281 - Charlie2b DNA MER1_type -107 2675 1933 4 1063 411 73 0 0 chr4 62746905 62746960 -92883160 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1063 884 273 16 66 chr4 62746961 62747204 -92882916 - B4 SINE B4 -22 270 40 4 1063 651 219 29 21 chr4 62747235 62747375 -92882745 - B1F1 SINE Alu -8 141 1 4 1063 230 292 161 42 chr4 62748665 62748783 -92881337 + L2c LINE L2 3255 3386 -1 4 1063 186 255 0 56 chr4 62748866 62748920 -92881200 - MIRb SINE MIR -7 261 211 4 1063 211 246 17 68 chr4 62750139 62750242 -92879878 - MIR SINE MIR -65 203 102 4 1063 1956 145 3 25 chr4 62753022 62753347 -92876773 - MTC LTR MaLR 0 421 104 4 1063 907 321 78 85 chr4 62754341 62754787 -92875333 - MLT1F2 LTR MaLR -1 559 117 4 1063 207 0 0 0 chr4 62755735 62755758 -92874362 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1063 288 0 0 0 chr4 62757210 62757242 -92872878 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1063 861 145 8 8 chr4 62758217 62758349 -92871771 + B1_Mus2 SINE Alu 15 146 -1 4 1063 266 67 22 0 chr4 62758352 62758397 -92871723 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 4 1063 400 236 33 22 chr4 62759130 62759221 -92870899 + PB1D10 SINE Alu 11 102 -15 4 1063 209 119 24 0 chr4 62759223 62759265 -92870855 + (GGA)n Simple_repeat Simple_repeat 1 43 0 4 1063 656 320 73 57 chr4 62759306 62759621 -92870499 - MLT1A LTR MaLR -33 341 22 4 1063 380 276 334 42 chr4 62760383 62760551 -92869569 + ID_B1 SINE B4 2 218 -6 4 1063 225 192 71 71 chr4 62760504 62760560 -92869560 + PB1D7 SINE Alu 65 120 0 4 1063 395 312 31 31 chr4 62760649 62760778 -92869342 + MER5A DNA MER1_type 9 137 -52 4 1063 886 207 42 21 chr4 62760818 62761010 -92869110 + B3A SINE B2 2 197 -1 4 1063 496 269 125 28 chr4 62762172 62762348 -92867772 - ID_B1 SINE B4 -8 216 24 4 1063 545 250 49 68 chr4 62763540 62763703 -92866417 + RSINE1 SINE B4 3 162 -3 4 1063 315 316 84 17 chr4 62763924 62764043 -92866077 - MIR SINE MIR -31 231 105 4 1063 1175 264 28 14 chr4 62764043 62764331 -92865789 + B4A SINE B4 1 292 0 4 1063 636 14 0 0 chr4 62766310 62766383 -92863737 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1063 615 103 0 0 chr4 62766674 62766771 -92863349 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 1063 451 312 102 20 chr4 62766786 62767090 -92863030 - L1ME2 LINE L1 -269 6755 6427 4 1063 594 345 117 60 chr4 62767203 62767953 -92862167 - L1ME2 LINE L1 -743 6263 5473 4 1063 215 170 0 21 chr4 62767996 62768044 -92862076 + GA-rich Low_complexity Low_complexity 3 49 0 4 1063 230 267 133 33 chr4 62768416 62768536 -92861584 - L1ME2 LINE L1 -1749 5251 5120 4 1063 796 269 52 14 chr4 62770016 62770227 -92859893 + B4A SINE B4 1 219 -73 4 1063 720 145 26 0 chr4 62770295 62770421 -92859699 - ORR1C1 LTR MaLR -233 137 1 4 1063 409 121 0 15 chr4 62770422 62770489 -92859631 - ORR1C1-int LTR MaLR -1 1508 1443 4 1063 272 290 43 0 chr4 62770499 62770568 -92859552 + B4A SINE B4 215 286 -6 4 1063 188 67 0 32 chr4 62770695 62770726 -92859394 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4 1063 245 290 44 31 chr4 62770728 62770888 -92859232 - L1ME2 LINE L1 -2485 4518 4357 4 1063 103 67 0 0 chr4 62770914 62771108 -92859012 + AT_rich Low_complexity Low_complexity 1 194 0 4 1063 701 329 134 68 chr4 62771112 62771785 -92858335 - L1ME2 LINE L1 -3634 3700 3104 4 1063 841 201 0 0 chr4 62771785 62771934 -92858186 + B1_Mur3 SINE Alu 1 149 0 4 1063 525 292 171 23 chr4 62771934 62772242 -92857878 - L1ME2 LINE L1 -4044 3043 2753 4 1063 444 304 163 41 chr4 62772347 62772813 -92857307 - L1ME2 LINE L1 -5096 1991 1469 4 1063 477 122 0 0 chr4 62773020 62773094 -92857026 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1063 349 305 148 74 chr4 62776726 62776970 -92853150 + Charlie8 DNA MER1_type 38 299 -2129 4 1063 410 255 28 0 chr4 62777674 62777780 -92852340 + B1F SINE Alu 41 149 0 4 1063 231 252 91 27 chr4 62780678 62780788 -92849332 - MIR3 SINE MIR -88 120 4 4 1063 555 289 46 28 chr4 62780866 62781083 -92849037 - MIRb SINE MIR -8 260 40 4 1063 213 274 21 68 chr4 62782021 62782146 -92847974 + MIRm SINE MIR 149 258 -10 4 1063 236 369 24 0 chr4 62783136 62783220 -92846900 - MLT1J2 LTR MaLR -121 327 242 4 132 217 273 61 0 chr4 62783443 62783509 -92846611 + B4A SINE B4 77 146 -146 4 1064 2386 135 21 49 chr4 62783711 62784100 -92846020 - ORR1C1 LTR MaLR 0 378 1 4 1064 563 176 71 19 chr4 62784111 62784255 -92845865 - ORR1C1-int LTR MaLR -32 1548 1381 4 1064 1179 243 98 83 chr4 62784250 62784931 -92845189 - ORR1C1-int LTR MaLR -601 769 3 4 1064 1690 157 137 32 chr4 62784932 62785274 -92844846 - ORR1C1 LTR MaLR 0 378 1 4 1064 489 182 0 0 chr4 62785751 62785899 -92844221 + CT-rich Low_complexity Low_complexity 1 148 0 4 1064 315 0 0 0 chr4 62785899 62785934 -92844186 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1064 317 304 52 7 chr4 62786495 62786631 -92843489 - MIR SINE MIR -1 261 120 4 1064 1136 258 41 11 chr4 62786632 62786841 -92843279 + B4 SINE B4 2 214 -78 4 1064 611 0 27 0 chr4 62786841 62786915 -92843205 + (TAAAA)n Simple_repeat Simple_repeat 4 79 0 4 1064 1136 258 41 11 chr4 62786915 62786976 -92843144 + B4 SINE B4 215 280 -12 4 1064 3731 318 75 18 chr4 62787554 62789385 -92840735 - Lx8 LINE L1 -16 7457 5487 4 1064 1291 292 60 17 chr4 62789387 62789867 -92840253 + Lx8 LINE L1 4918 5418 -462 4 1064 945 183 139 0 chr4 62789868 62790048 -92840072 + B3 SINE B2 1 205 -11 4 1064 235 264 0 0 chr4 62790074 62790127 -92839993 + L1M2 LINE L1 5442 5494 -806 4 1064 582 298 113 18 chr4 62790123 62790557 -92839563 - L1MD LINE L1 -2495 3651 3177 4 1064 3794 215 54 126 chr4 62790551 62790667 -92839453 - RMER1B Other Other 0 1066 950 4 1064 546 79 0 0 chr4 62790667 62790743 -92839377 + (CATA)n Simple_repeat Simple_repeat 4 79 0 4 1064 3794 215 54 126 chr4 62790743 62791767 -92838353 - RMER1B Other Other -117 949 10 4 1064 276 167 0 71 chr4 62791987 62792071 -92838049 + C-rich Low_complexity Low_complexity 3 80 0 4 1064 270 0 0 0 chr4 62792833 62792863 -92837257 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1064 679 45 0 0 chr4 62792875 62792964 -92837156 - BC1_Mm scRNA scRNA -63 89 1 4 1064 189 121 0 0 chr4 62794895 62794928 -92835192 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1064 516 16 0 0 chr4 62795033 62795094 -92835026 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1064 255 79 0 0 chr4 62795201 62795239 -92834881 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1064 305 141 0 37 chr4 62801792 62801873 -92828247 + T-rich Low_complexity Low_complexity 1 78 0 5 1064 308 238 26 95 chr4 62802478 62802594 -92827526 + MT2B LTR ERVL 155 262 -339 5 1064 400 280 10 0 chr4 62802496 62802596 -92827524 + PB1D10 SINE Alu 8 108 -9 5 1064 375 41 0 0 chr4 62803841 62803890 -92826230 + (TTGG)n Simple_repeat Simple_repeat 4 52 0 5 1064 321 255 65 137 chr4 62803910 62803923 -92826197 - B4 SINE B4 -68 224 216 5 1064 248 0 0 30 chr4 62803923 62803956 -92826164 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1064 830 129 42 35 chr4 62803956 62804084 -92826036 - B1_Mur4 SINE Alu -11 139 6 5 1064 321 255 65 137 chr4 62804084 62804110 -92826010 - B4 SINE B4 -77 215 69 5 1064 241 203 136 30 chr4 62806888 62806954 -92823166 + Charlie13a DNA Charlie 1157 1229 -285 5 1064 2050 182 77 5 chr4 62807319 62807710 -92822410 + MTC LTR MaLR 3 421 0 5 1064 915 155 0 0 chr4 62808120 62808268 -92821852 + B1_Mur2 SINE Alu 1 148 -1 5 1064 252 0 0 0 chr4 62808317 62808345 -92821775 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 5 1064 737 287 87 0 chr4 62808389 62808584 -92821536 + B3 SINE B2 5 216 0 5 1064 285 288 63 77 chr4 62809015 62809158 -92820962 + RLTR14 LTR ERV1 226 366 -16 5 1064 232 319 94 22 chr4 62810005 62810202 -92819918 - MIRb SINE MIR -47 215 2 5 1064 499 293 61 68 chr4 62810858 62811151 -92818969 - B4A SINE B4 0 292 2 5 1064 352 344 0 8 chr4 62811707 62811836 -92818284 + CT-rich Low_complexity Low_complexity 1 128 0 5 1064 565 262 21 7 chr4 62811857 62811999 -92818121 - ID_B1 SINE B4 -1 223 80 5 1064 235 312 12 0 chr4 62811999 62812079 -92818041 + CT-rich Low_complexity Low_complexity 2 82 0 5 1064 27 0 0 0 chr4 62813068 62813095 -92817025 + AT_rich Low_complexity Low_complexity 1 27 0 5 1064 342 134 0 0 chr4 62813191 62813258 -92816862 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 5 1064 708 74 0 0 chr4 62814349 62814444 -92815676 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 5 1064 270 311 41 0 chr4 62815817 62815939 -92814181 + MIR SINE MIR 73 199 -63 5 1064 784 226 51 94 chr4 62816187 62816421 -92813699 - ID_B1 SINE B4 0 224 1 5 1064 270 272 69 17 chr4 62816801 62816917 -92813203 + L4 LINE RTE 1785 1906 -123 5 1064 24 32 0 0 chr4 62816921 62816952 -92813168 + AT_rich Low_complexity Low_complexity 1 31 0 5 1064 745 143 8 0 chr4 62817008 62817134 -92812986 - RSINE1 SINE B4 -28 137 11 5 1064 499 173 0 18 chr4 62817193 62817305 -92812815 + GA-rich Low_complexity Low_complexity 2 111 0 5 1064 1106 95 0 4 chr4 62817305 62817537 -92812583 + (GAA)n Simple_repeat Simple_repeat 1 231 0 5 1064 893 166 234 0 chr4 62817743 62817918 -92812202 - B3 SINE B2 0 216 1 5 1064 1368 51 0 0 chr4 62818821 62819038 -92811082 + (CA)n Simple_repeat Simple_repeat 1 217 0 5 1064 684 259 19 25 chr4 62819039 62819201 -92810919 + RSINE1 SINE B4 1 161 -4 5 1064 728 289 54 5 chr4 62819689 62819894 -92810226 + ID_B1 SINE B4 3 217 -7 5 1064 189 282 189 9 chr4 62820506 62820617 -92809503 - MIRc SINE MIR -116 152 22 5 1064 674 278 161 4 chr4 62820920 62820997 -92809123 + B4 SINE B4 1 87 -205 5 1064 495 45 0 0 chr4 62820997 62821063 -92809057 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1064 674 278 161 4 chr4 62821063 62821227 -92808893 + B4 SINE B4 88 280 -12 5 1064 450 0 0 0 chr4 62821240 62821290 -92808830 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1064 477 0 0 0 chr4 62821292 62821345 -92808775 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1064 318 302 33 48 chr4 62821923 62822068 -92808052 - MIRb SINE MIR -92 170 27 5 1064 1239 61 0 0 chr4 62822411 62822558 -92807562 + B1_Mus1 SINE Alu 2 148 0 5 1064 917 158 7 0 chr4 62823674 62823813 -92806307 - B1_Mur4 SINE Alu -10 140 1 5 1064 190 347 52 21 chr4 62824851 62824948 -92805172 + L2a LINE L2 3104 3203 -223 5 1064 885 267 0 24 chr4 62825062 62825269 -92804851 - B4 SINE B4 -6 286 85 5 1064 441 0 0 0 chr4 62825269 62825318 -92804802 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1064 572 208 58 0 chr4 62825349 62825469 -92804651 - RSINE1 SINE B4 -37 128 2 5 1064 307 217 169 0 chr4 62825469 62825547 -92804573 - B4A SINE B4 -196 96 5 5 1064 255 252 56 85 chr4 62828305 62828473 -92801647 - MIRb SINE MIR -47 161 1 5 1064 216 271 82 0 chr4 62832066 62832151 -92797969 + MIR3 SINE MIR 96 187 -21 5 1064 822 96 0 0 chr4 62834186 62834321 -92795799 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1064 417 20 0 0 chr4 62834321 62834370 -92795750 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1064 265 279 59 0 chr4 62834371 62834439 -92795681 - RSINE1 SINE B4 -13 152 81 5 1064 749 254 81 0 chr4 62834451 62834636 -92795484 + ID_B1 SINE B4 10 209 -15 5 1064 1102 215 7 70 chr4 62834654 62834924 -92795196 + MT2A LTR ERVL 38 290 -243 5 1064 695 340 3 34 chr4 62835015 62835194 -92794926 - MT2A LTR ERVL -111 422 245 5 1064 504 93 0 0 chr4 62835194 62835269 -92794851 + (CAG)n Simple_repeat Simple_repeat 1 75 0 5 1064 695 340 3 34 chr4 62835269 62835381 -92794739 - MT2A LTR ERVL -289 244 140 5 1064 983 261 51 8 chr4 62835385 62835640 -92794480 + MTEa LTR MaLR 114 379 0 5 1064 1450 55 33 6 chr4 62835957 62836140 -92793980 + B2_Mm2 SINE B2 1 188 -7 5 1064 1149 66 0 0 chr4 62836176 62836313 -92793807 + B1_Mus1 SINE Alu 2 138 -10 5 1064 297 0 0 0 chr4 62836313 62836346 -92793774 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1064 760 231 0 0 chr4 62836430 62836573 -92793547 + B1_Mur1 SINE Alu 1 143 -6 5 1064 23 68 0 0 chr4 62836579 62836623 -92793497 + AT_rich Low_complexity Low_complexity 1 44 0 5 1064 368 296 139 60 chr4 62836682 62836833 -92793287 + RSINE1 SINE B4 3 165 0 5 1064 1110 118 0 0 chr4 62836848 62837018 -92793102 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 5 1064 237 304 169 12 chr4 62837020 62837180 -92792940 + L1M5 LINE L1 3031 3215 -2931 5 1064 374 330 0 0 chr4 62837224 62837321 -92792799 + B3A SINE B2 61 157 -41 5 1064 366 354 48 78 chr4 62837513 62837886 -92792234 + L1M5 LINE L1 3187 3555 -2591 5 1064 369 0 0 0 chr4 62837886 62837927 -92792193 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1064 366 354 48 78 chr4 62837927 62838172 -92791948 + L1M5 LINE L1 3556 3787 -2359 5 1064 369 341 38 55 chr4 62838193 62838429 -92791691 + L1MC LINE L1 3866 4097 -2049 5 1064 648 302 98 43 chr4 62838526 62838803 -92791317 + B4A SINE B4 1 292 0 5 1064 486 0 0 0 chr4 62838825 62838879 -92791241 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1064 493 326 26 26 chr4 62838880 62839113 -92791007 - MER2 DNA MER2_type -87 258 26 5 1064 187 31 30 30 chr4 62839720 62839753 -92790367 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1064 574 301 57 0 chr4 62839832 62840008 -92790112 - B4A SINE B4 -106 186 1 5 1064 314 370 9 0 chr4 62840167 62840275 -92789845 + PB1D10 SINE Alu 9 117 0 5 1064 296 320 13 0 chr4 62840632 62840710 -92789410 + ID2 SINE ID 5 83 0 5 1064 462 18 0 0 chr4 62841022 62841077 -92789043 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1064 792 224 0 13 chr4 62841103 62841252 -92788868 + B1_Mur1 SINE Alu 3 149 0 5 1064 1137 97 17 6 chr4 62841259 62841400 -92788720 + B2_Mm2 SINE B2 1 141 -54 5 1064 5006 39 2 15 chr4 62841400 62842002 -92788118 + L1Md_F2 LINE L1 5987 6580 -2 5 1064 1137 97 17 6 chr4 62842002 62842036 -92788084 + B2_Mm2 SINE B2 142 178 -17 5 1064 330 285 50 78 chr4 62842273 62842414 -92787706 + L1M5 LINE L1 5576 5712 -461 5 1064 231 194 44 0 chr4 62844492 62844549 -92785571 - MIRc SINE MIR -51 157 98 5 1064 479 291 8 0 chr4 62844671 62844798 -92785322 - RSINE1 SINE B4 -36 129 2 5 1064 811 251 87 0 chr4 62844801 62844984 -92785136 - ID_B1 SINE B4 -21 203 5 5 1064 228 327 25 51 chr4 62845450 62845608 -92784512 - L2c LINE L2 -213 3174 3021 5 1064 216 359 0 28 chr4 62846086 62846192 -92783928 + L2b LINE L2 3272 3374 -1 5 1064 627 251 18 87 chr4 62846819 62847037 -92783083 - B4 SINE B4 -87 205 3 5 1064 427 307 21 21 chr4 62847048 62847191 -92782929 - B1F1 SINE Alu -2 147 5 5 1064 207 246 28 28 chr4 62848416 62848487 -92781633 + MIRc SINE MIR 62 132 -136 5 1064 250 348 55 35 chr4 62849033 62849183 -92780937 + MIRb SINE MIR 5 163 -105 5 1064 430 302 18 9 chr4 62849630 62849973 -92780147 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 5 1064 517 306 23 0 chr4 62850008 62850181 -92779939 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 5 1064 1017 221 16 3 chr4 62850232 62850553 -92779567 + (TGGA)n Simple_repeat Simple_repeat 1 324 0 5 1064 374 191 36 9 chr4 62852219 62852330 -92777790 + CT-rich Low_complexity Low_complexity 3 116 0 5 1064 825 298 11 0 chr4 62853044 62853232 -92776888 + ID_B1 SINE B4 1 190 -34 5 1064 733 288 20 25 chr4 62853268 62853471 -92776649 + B4A SINE B4 29 230 -62 5 1064 626 265 20 7 chr4 62853474 62853622 -92776498 + RSINE1 SINE B4 6 155 -10 5 1064 271 228 0 0 chr4 62853636 62853693 -92776427 + B4A SINE B4 216 272 -20 5 1064 483 73 0 0 chr4 62853693 62853761 -92776359 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1064 314 95 0 31 chr4 62853796 62853861 -92776259 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 5 1064 379 332 47 43 chr4 62853917 62854150 -92775970 + MER2 DNA MER2_type 104 337 -8 5 1064 197 333 0 48 chr4 62854203 62854266 -92775854 - MIRb SINE MIR -91 177 118 5 1064 349 224 0 0 chr4 62854537 62854613 -92775507 + MIR SINE MIR 67 142 -120 5 1064 322 366 61 0 chr4 62854735 62854866 -92775254 - MIRb SINE MIR -76 192 54 5 1064 2120 158 69 37 chr4 62855493 62855684 -92774436 + MTC LTR MaLR 1 204 -217 5 1064 2674 71 36 57 chr4 62855684 62856071 -92774049 + L1Md_F2 LINE L1 6204 6582 0 6 1064 2120 158 69 37 chr4 62856071 62856287 -92773833 + MTC LTR MaLR 205 421 0 5 1064 697 303 64 97 chr4 62856499 62856872 -92773248 + MLT1G LTR MaLR 14 374 -217 6 1064 554 339 93 84 chr4 62856869 62857343 -92772777 - MLT1D LTR MaLR -25 480 3 6 1064 473 329 15 0 chr4 62857539 62857676 -92772444 - ID_B1 SINE B4 -1 223 85 6 1064 330 26 0 0 chr4 62858021 62858060 -92772060 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1064 241 299 45 45 chr4 62858119 62858231 -92771889 - MER102c DNA MER1_type 0 331 220 6 1064 327 25 0 0 chr4 62858341 62858381 -92771739 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1064 237 348 50 87 chr4 62858623 62858865 -92771255 - MLT2B1 LTR ERVL -214 306 74 6 1064 1859 182 66 15 chr4 62859021 62859417 -92770703 + MTD LTR MaLR 1 416 -3 6 1064 1856 112 11 108 chr4 62859404 62859635 -92770485 - ORR1A3 LTR MaLR 0 326 97 6 1064 1775 121 99 22 chr4 62859635 62859947 -92770173 - Lx LINE L1 0 6654 6319 6 1064 1856 112 11 108 chr4 62859947 62860076 -92770044 - ORR1A3 LTR MaLR -230 96 1 6 1064 369 266 112 1 chr4 62861299 62861410 -92768710 + PB1 SINE Alu 3 125 -2 6 1064 442 289 11 97 chr4 62861427 62861603 -92768517 + B4 SINE B4 2 162 -130 6 1064 181 236 103 52 chr4 62861835 62861893 -92768227 + L2c LINE L2 3323 3383 -4 6 1064 283 329 0 0 chr4 62863366 62863445 -92766675 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1064 230 325 11 67 chr4 62863801 62863890 -92766230 + MamGypLTR1a LTR Gypsy 598 681 -103 6 1064 388 319 149 70 chr4 62863916 62864278 -92765842 - MTEa LTR MaLR -17 362 3 6 1064 1290 246 110 12 chr4 62864526 62864871 -92765249 - MTE2b LTR MaLR 0 379 1 6 1064 741 262 104 0 chr4 62865649 62865851 -92764269 + ID_B1 SINE B4 2 224 0 6 1064 625 293 18 18 chr4 62865875 62866042 -92764078 + B3A SINE B2 2 168 -30 6 1064 270 0 0 0 chr4 62866045 62866075 -92764045 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 6 1064 190 274 16 31 chr4 62867054 62867118 -92763002 + L2c LINE L2 3325 3387 0 6 1064 313 265 19 38 chr4 62867122 62867228 -92762892 - MIR3 SINE MIR -4 204 101 6 1064 1053 244 14 0 chr4 62867544 62867761 -92762359 - ID_B1 SINE B4 -1 223 4 6 1064 261 381 0 0 chr4 62867767 62867864 -92762256 + (CAT)n Simple_repeat Simple_repeat 3 99 0 6 1064 310 274 14 0 chr4 62867889 62867962 -92762158 - B1F SINE Alu -52 97 24 6 1064 633 317 42 42 chr4 62868058 62868341 -92761779 - B4A SINE B4 -6 286 4 6 1064 196 358 194 46 chr4 62869276 62869560 -92760560 + L3 LINE CR1 3816 4141 -348 6 1064 477 0 0 0 chr4 62870472 62870525 -92759595 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1064 342 0 0 0 chr4 62870525 62870562 -92759558 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1064 327 49 0 0 chr4 62871318 62871359 -92758761 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1064 23 0 0 0 chr4 62871743 62871766 -92758354 + AT_rich Low_complexity Low_complexity 1 23 0 6 1064 638 242 6 73 chr4 62871774 62871939 -92758181 - RSINE1 SINE B4 0 165 12 6 1064 441 54 0 0 chr4 62872001 62872057 -92758063 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 6 1064 649 287 78 56 chr4 62872196 62872480 -92757640 - ORR1E LTR MaLR -62 297 8 6 1064 210 118 0 0 chr4 62874659 62874693 -92755427 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1064 25 31 0 0 chr4 62874928 62874960 -92755160 + GC_rich Low_complexity Low_complexity 1 32 0 6 1064 22 0 0 0 chr4 62875339 62875361 -92754759 + GC_rich Low_complexity Low_complexity 1 22 0 6 1064 230 250 13 0 chr4 62875734 62875810 -92754310 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1064 24 53 0 0 chr4 62876765 62876803 -92753317 + GC_rich Low_complexity Low_complexity 1 38 0 6 1064 316 171 66 0 chr4 62877454 62877530 -92752590 - MIR3 SINE MIR -19 189 109 6 1064 315 0 0 0 chr4 62878695 62878730 -92751390 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1064 238 256 69 11 chr4 62879502 62879589 -92750531 + MIR3 SINE MIR 75 166 -42 6 1064 248 351 53 62 chr4 62881329 62881572 -92748548 - MIRb SINE MIR -5 263 23 6 1064 269 292 31 0 chr4 62883042 62883150 -92746970 + B1F1 SINE Alu 1 142 -7 6 1064 279 93 0 0 chr4 62884029 62884072 -92746048 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 6 1064 252 320 173 16 chr4 62884923 62885050 -92745070 - MIR SINE MIR -72 190 44 6 1064 238 359 93 58 chr4 62887354 62887493 -92742627 + Charlie8 DNA MER1_type 1 144 -2284 6 1064 214 229 12 146 chr4 62888495 62888577 -92741543 + MIRb SINE MIR 50 120 -148 6 1064 180 0 0 0 chr4 62889085 62889105 -92741015 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1064 285 230 78 50 chr4 62889158 62889250 -92740870 + MIRm SINE MIR 81 174 -34 6 1064 203 277 56 65 chr4 62890752 62890860 -92739260 + MIR SINE MIR 23 129 -133 6 1064 245 315 185 0 chr4 62891060 62891191 -92738929 - MIRb SINE MIR 0 262 108 6 1064 197 281 54 33 chr4 62892223 62892315 -92737805 - MIRb SINE MIR -174 94 1 6 1064 450 0 0 0 chr4 62892532 62892582 -92737538 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1064 328 342 39 39 chr4 62894073 62894228 -92735892 - MIR SINE MIR -80 182 28 6 1064 225 281 11 68 chr4 62894358 62894446 -92735674 + MIR SINE MIR 64 146 -62 6 1064 203 317 17 0 chr4 62895856 62895916 -92734204 - L2c LINE L2 -222 3165 3105 6 1064 220 293 59 29 chr4 62897791 62897893 -92732227 - MIRb SINE MIR -40 228 124 6 1064 772 63 0 18 chr4 62898639 62898752 -92731368 + (GGA)n Simple_repeat Simple_repeat 2 112 0 6 1064 293 248 254 9 chr4 62899165 62899279 -92730841 - MIRb SINE MIR -92 176 35 6 1064 335 360 60 65 chr4 62899610 62899827 -92730293 + MIR SINE MIR 23 241 -27 6 1064 665 342 59 59 chr4 62900196 62900482 -92729638 + B4 SINE B4 3 288 -4 6 1064 356 314 42 55 chr4 62900666 62900831 -92729289 - RSINE1 SINE B4 -1 164 2 6 1064 384 250 0 0 chr4 62900839 62900911 -92729209 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 6 1064 615 51 0 0 chr4 62900921 62901000 -92729120 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 6 1064 183 42 0 0 chr4 62901376 62901400 -92728720 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1064 259 297 11 47 chr4 62901427 62901618 -92728502 - L1M5 LINE L1 -1572 4574 4391 6 1064 295 276 144 17 chr4 62901719 62901837 -92728283 - L1MC LINE L1 -1888 4258 4126 6 1064 629 266 79 6 chr4 62902398 62902576 -92727544 - RMER30 DNA MER1_type -7 195 5 6 1064 419 277 163 45 chr4 62902760 62902965 -92727155 + MIR SINE MIR 5 222 -40 6 1064 185 323 46 0 chr4 62903038 62903103 -92727017 + L2a LINE L2 3342 3409 -17 6 1064 276 297 72 0 chr4 62904029 62904140 -92725980 - MIRc SINE MIR -119 149 31 6 1064 180 0 0 0 chr4 62905269 62905289 -92724831 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1064 486 0 0 0 chr4 62905651 62905705 -92724415 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1064 202 304 128 0 chr4 62906767 62906869 -92723251 + L2b LINE L2 3059 3173 -202 6 1064 219 304 18 0 chr4 62908016 62908072 -92722048 - L2b LINE L2 0 3375 3319 6 1064 206 86 0 54 chr4 62908119 62908156 -92721964 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1064 538 335 114 15 chr4 62908275 62908471 -92721649 + B4A SINE B4 3 216 -76 6 1064 772 228 28 0 chr4 62908471 62908616 -92721504 + B1F2 SINE Alu 1 149 0 6 1064 538 335 114 15 chr4 62908616 62908683 -92721437 + B4A SINE B4 217 291 -1 6 1064 253 254 15 0 chr4 62908972 62909039 -92721081 + MER5B DNA MER1_type 109 176 -2 6 1064 205 262 16 32 chr4 62909073 62909136 -92720984 - MIRm SINE MIR -199 77 16 6 1064 212 296 56 0 chr4 62909303 62909374 -92720746 + L2b LINE L2 3301 3375 0 6 1064 327 261 0 14 chr4 62909557 62909650 -92720470 - B1F1 SINE Alu -36 113 23 6 1064 321 285 116 7 chr4 62910134 62910272 -92719848 - MER117 DNA MER1_type -34 163 11 6 1064 300 102 0 0 chr4 62910729 62910778 -92719342 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 6 1064 200 191 48 0 chr4 62910924 62910966 -92719154 - MIRc SINE MIR -129 139 96 6 1064 295 314 40 16 chr4 62912007 62912133 -92717987 + MIRb SINE MIR 86 214 -54 6 1064 389 295 56 37 chr4 62912783 62912998 -92717122 - L1MB2 LINE L1 0 6171 5953 6 1064 187 343 83 37 chr4 62913239 62913348 -92716772 - MIRm SINE MIR -117 159 46 6 1064 907 231 37 5 chr4 62913653 62913870 -92716250 + ID_B1 SINE B4 1 224 0 6 1064 381 136 0 0 chr4 62913872 62913938 -92716182 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6 1065 227 274 86 34 chr4 62914663 62914780 -92715340 + LTR16A LTR ERVL 220 342 -109 6 1065 350 57 19 0 chr4 62916182 62916235 -92713885 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 6 1065 494 332 53 5 chr4 62916741 62916929 -92713191 + MIR SINE MIR 6 202 -60 6 1065 499 238 29 169 chr4 62916929 62917136 -92712984 - RMER30 DNA MER1_type -7 195 18 6 1065 504 248 70 0 chr4 62918415 62918544 -92711576 + MER58A DNA MER1_type 37 174 -50 6 1065 224 320 39 0 chr4 62920046 62920124 -92709996 - MIRm SINE MIR -145 131 51 6 1065 653 146 0 7 chr4 62920412 62920475 -92709645 + polypyrimidine Low_complexity Low_complexity 89 151 0 6 1065 921 128 0 0 chr4 62920475 62920655 -92709465 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1065 653 146 0 7 chr4 62920655 62920743 -92709377 + polypyrimidine Low_complexity Low_complexity 1 88 0 6 1065 207 200 22 0 chr4 62920880 62920925 -92709195 - MIRc SINE MIR -141 127 82 6 1065 374 319 59 0 chr4 62922345 62922464 -92707656 + MIR SINE MIR 20 145 -117 7 1065 304 345 18 0 chr4 62923375 62923485 -92706635 + MIRb SINE MIR 40 151 -117 7 1065 306 0 0 0 chr4 62923739 62923773 -92706347 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 7 1065 1047 94 0 0 chr4 62923773 62923921 -92706199 + (TTTC)n Simple_repeat Simple_repeat 3 151 0 7 1065 325 318 37 0 chr4 62924841 62924948 -92705172 + MIRb SINE MIR 26 136 -132 7 1065 230 224 37 30 chr4 62925925 62926034 -92704086 + MIR SINE MIR 34 135 -133 7 1065 560 53 13 0 chr4 62926834 62926910 -92703210 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 7 1065 394 295 168 19 chr4 62927171 62927398 -92702722 + MIR SINE MIR 18 268 0 7 1065 302 348 95 38 chr4 62928019 62928234 -92701886 + MIR SINE MIR 33 266 -2 7 1065 240 273 0 0 chr4 62928276 62928331 -92701789 + MER117 DNA MER1_type 93 147 -50 7 1065 182 200 0 0 chr4 62928429 62928464 -92701656 - L2b LINE L2 -5 3370 3336 7 1065 373 289 21 0 chr4 62929038 62929135 -92700985 - MER53 DNA hAT -79 114 16 7 1065 205 350 66 11 chr4 62930343 62930499 -92699621 - MIRb SINE MIR -85 183 15 7 1065 183 265 0 0 chr4 62932487 62932536 -92697584 - MIR SINE MIR -79 129 81 7 1065 183 308 37 37 chr4 62933202 62933283 -92696837 - MIRb SINE MIR -78 190 110 7 1065 208 328 24 40 chr4 62934937 62935061 -92695059 - MIR3 SINE MIR -5 203 82 7 1065 1174 81 0 0 chr4 62935844 62935992 -92694128 - B1_Mus1 SINE Alu 0 148 1 7 1065 207 0 0 0 chr4 62936054 62936077 -92694043 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1065 260 293 90 75 chr4 62936447 62936635 -92693485 + Tigger15a DNA TcMar 148 338 -377 7 1065 186 156 0 0 chr4 62938889 62938934 -92691186 + CT-rich Low_complexity Low_complexity 2 46 0 7 1065 822 143 0 0 chr4 62938940 62939115 -92691005 + (TC)n Simple_repeat Simple_repeat 1 175 0 7 1065 378 241 26 59 chr4 62939209 62939341 -92690779 + PB1D10 SINE Alu 5 127 -22 7 1065 348 298 112 12 chr4 62940670 62940840 -92689280 - MIRb SINE MIR -18 250 64 7 1065 776 206 14 7 chr4 62940900 62941042 -92689078 + B1_Mur1 SINE Alu 2 144 -5 7 1065 327 339 8 62 chr4 62941777 62941906 -92688214 - ID_B1 SINE B4 -20 204 83 7 1065 1007 330 62 23 chr4 62944161 62944647 -92685473 - Charlie1b DNA MER1_type -16 507 3 7 1065 1128 271 39 78 chr4 62945420 62945476 -92684644 - MTEb LTR MaLR -7 372 325 7 1065 2494 171 10 7 chr4 62945476 62945894 -92684226 - MTC LTR MaLR -2 419 1 7 1065 1128 271 39 78 chr4 62945894 62946043 -92684077 - MTEb LTR MaLR -55 324 190 7 1065 3164 147 19 10 chr4 62946043 62946566 -92683554 - RLTR11A LTR ERVK 0 528 1 7 1065 1128 271 39 78 chr4 62946566 62946744 -92683376 - MTEb LTR MaLR -190 189 3 7 1065 351 0 0 0 chr4 62947036 62947075 -92683045 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1065 182 333 0 0 chr4 62947292 62947349 -92682771 + MIRb SINE MIR 43 99 -169 7 1065 1148 151 95 24 chr4 62947925 62948136 -92681984 + URR1A DNA MER1_type 1 226 0 7 1065 392 36 54 0 chr4 62948520 62948576 -92681544 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 7 1065 340 353 78 10 chr4 62948819 62949025 -92681095 - Charlie4 DNA MER1_type -3 1958 1739 7 1065 303 261 57 141 chr4 62949095 62949287 -92680833 - Charlie4 DNA MER1_type -1785 176 1 7 1065 400 304 58 71 chr4 62949672 62949916 -92680204 - MIRb SINE MIR -16 252 10 7 1065 236 246 130 0 chr4 62949951 62950020 -92680100 - L2b LINE L2 -3 3372 3295 7 1065 375 276 8 54 chr4 62950847 62950977 -92679143 - B1_Mur2 SINE Alu 0 149 26 7 1065 639 179 6 11 chr4 62951767 62951948 -92678172 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1065 201 182 0 0 chr4 62951960 62952015 -92678105 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1065 204 135 0 0 chr4 62952195 62952232 -92677888 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1065 241 273 70 2 chr4 62952949 62953066 -92677054 - MIRb SINE MIR -121 155 33 7 1065 240 322 34 8 chr4 62953216 62953335 -92676785 - L1MD3 LINE L1 -17 7978 7857 7 1065 666 0 0 0 chr4 62953843 62953917 -92676203 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 7 1065 279 236 18 0 chr4 62955571 62955626 -92674494 - MIRm SINE MIR -16 260 205 7 1065 1267 253 7 21 chr4 62955995 62956282 -92673838 + B4A SINE B4 5 287 -5 7 1065 245 151 171 52 chr4 62956638 62956715 -92673405 - MIR SINE MIR -116 146 58 7 1065 207 186 0 0 chr4 62957212 62957255 -92672865 + CT-rich Low_complexity Low_complexity 4 46 0 7 1065 319 228 37 37 chr4 62957256 62957321 -92672799 - B1_Mur2 SINE Alu -1 148 84 7 1065 3762 229 53 21 chr4 62957321 62958263 -92671857 - RCHARR1 DNA MER1_type 0 974 3 7 1065 319 259 49 0 chr4 62958265 62958346 -92671774 - PB1D7 SINE Alu -35 85 1 7 1065 327 49 0 0 chr4 62958430 62958471 -92671649 + (TCC)n Simple_repeat Simple_repeat 3 43 0 7 1065 217 357 106 9 chr4 62959300 62959413 -92670707 - MIRb SINE MIR -59 209 86 7 1065 255 236 122 11 chr4 62960359 62960449 -92669671 + MIRb SINE MIR 85 184 -84 7 1065 295 174 110 0 chr4 62961886 62961995 -92668125 - RMER17D LTR ERVK -524 365 245 7 1065 454 265 11 58 chr4 62965076 62965304 -92664816 - HAL1-2a_MD LINE L1 -498 2526 2347 7 1065 357 123 18 70 chr4 62965306 62965420 -92664700 + (ATGGTG)n Simple_repeat Simple_repeat 4 111 0 7 1065 567 256 28 39 chr4 62965432 62965611 -92664509 - HAL1-2a_MD LINE L1 -522 2502 2326 7 1065 203 339 0 0 chr4 62965621 62965683 -92664437 + (ATGGTG)n Simple_repeat Simple_repeat 1 62 0 7 1065 489 296 18 36 chr4 62965692 62965857 -92664263 - HAL1-2a_MD LINE L1 -518 2506 2345 7 1065 355 310 37 31 chr4 62965847 62966010 -92664110 - HAL1-2a_MD LINE L1 -511 2513 2350 7 1065 227 320 53 0 chr4 62966868 62966943 -92663177 + MER117 DNA MER1_type 32 110 -87 7 1065 350 216 14 0 chr4 62967046 62967120 -92663000 + MER117 DNA MER1_type 123 197 0 7 1065 226 216 52 14 chr4 62968081 62968155 -92661965 - MIRm SINE MIR -118 158 79 7 1065 223 308 46 37 chr4 62970324 62970432 -92659688 + MIR SINE MIR 76 184 -78 7 1065 191 310 52 44 chr4 62970856 62970991 -92659129 + L2c LINE L2 3027 3162 -225 7 1065 281 225 14 0 chr4 62971169 62971240 -92658880 - MIRb SINE MIR -140 128 57 7 1065 714 330 53 21 chr4 62972157 62972439 -92657681 + B4A SINE B4 1 291 -1 7 1065 720 259 6 6 chr4 62973448 62973611 -92656509 + RSINE1 SINE B4 1 163 -2 7 1065 255 325 89 65 chr4 62973618 62973832 -92656288 - Charlie5 DNA MER1_type -124 2500 2282 7 1065 711 0 0 0 chr4 62974585 62974664 -92655456 + (TC)n Simple_repeat Simple_repeat 1 79 0 7 1065 227 293 98 29 chr4 62977893 62977995 -92652125 + MIRb SINE MIR 124 232 -36 7 1065 234 174 0 0 chr4 62980387 62980433 -92649687 + CT-rich Low_complexity Low_complexity 1 46 0 7 1065 8274 30 4 0 chr4 62980870 62982049 -92648071 - L1Md_F2 LINE L1 0 6582 5401 7 1065 192 77 0 0 chr4 62982693 62982719 -92647401 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1065 1246 326 106 40 chr4 62982973 62983699 -92646421 + L1M4 LINE L1 2853 3688 -2458 7 1065 363 44 0 0 chr4 62983699 62983744 -92646376 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 1065 1246 325 93 42 chr4 62983744 62984257 -92645863 + L1M4 LINE L1 3689 4234 -1912 7 1065 218 235 39 0 chr4 62985589 62985640 -92644480 + MIRm SINE MIR 119 171 -105 7 1065 496 100 20 0 chr4 62985901 62985990 -92644130 + (TC)n Simple_repeat Simple_repeat 1 91 0 7 1065 468 121 0 0 chr4 62985990 62986081 -92644039 + (TG)n Simple_repeat Simple_repeat 2 92 0 7 1065 496 100 20 0 chr4 62986081 62986091 -92644029 + (TC)n Simple_repeat Simple_repeat 1 10 0 7 1065 784 263 18 41 chr4 62986338 62986556 -92643564 - B3 SINE B2 -1 215 3 7 1065 340 313 68 14 chr4 62986670 62986921 -92643199 - RMER15 LTR ERVL 0 575 285 7 1065 465 19 0 0 chr4 62987412 62987466 -92642654 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1065 403 296 23 23 chr4 62988270 62988398 -92641722 - MER20 DNA MER1_type -85 134 7 7 1065 1261 41 0 0 chr4 62989815 62989962 -92640158 + B1_Mm SINE Alu 1 147 0 7 1065 284 120 20 0 chr4 62989962 62990012 -92640108 + (GAA)n Simple_repeat Simple_repeat 3 53 0 7 1065 270 0 0 0 chr4 62990211 62990241 -92639879 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 7 1065 233 277 26 122 chr4 62993267 62993382 -92636738 + PB1D7 SINE Alu 7 110 -10 7 1065 1322 29 25 21 chr4 62993382 62993871 -92636249 + (TAGA)n Simple_repeat Simple_repeat 1 490 0 7 1065 572 291 7 7 chr4 62993876 62994028 -92636092 + B3A SINE B2 46 197 -1 7 1065 21 82 0 0 chr4 62994029 62994078 -92636042 + AT_rich Low_complexity Low_complexity 1 49 0 7 1065 307 242 15 15 chr4 62995165 62995232 -92634888 + L1MEg LINE L1 1881 1947 -4137 7 1065 21 36 0 0 chr4 62995662 62995690 -92634430 + AT_rich Low_complexity Low_complexity 1 28 0 7 1065 356 330 0 19 chr4 62996580 62996688 -92633432 + ID_B1 SINE B4 2 107 -117 7 1065 2127 146 36 34 chr4 62996719 62996800 -92633320 + MYSERV16_I-int LTR ERVK 1142 1220 -1106 7 1065 1426 66 33 0 chr4 62996800 62996982 -92633138 + B2_Mm2 SINE B2 1 188 -7 7 1065 2127 146 36 34 chr4 62996982 62997347 -92632773 + MYSERV16_I-int LTR ERVK 1221 1589 -737 7 1065 192 40 0 0 chr4 62997454 62997479 -92632641 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1065 327 292 0 0 chr4 62998137 62998226 -92631894 + PB1D10 SINE Alu 27 115 -2 7 1065 5706 59 24 0 chr4 62998365 62999213 -92630907 - MusHAL1 LINE L1 -1789 923 56 7 1065 216 67 0 0 chr4 63000063 63000093 -92630027 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1065 273 151 0 0 chr4 63000250 63000303 -92629817 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1065 733 287 9 19 chr4 63000304 63000517 -92629603 - B4 SINE B4 -2 290 80 3 1065 264 182 18 0 chr4 63001199 63001254 -92628866 - MIR SINE MIR -126 136 81 4 1065 3833 23 2 0 chr4 63001275 63001709 -92628411 - L1Md_T LINE L1 0 6582 6148 5 1065 1806 160 17 0 chr4 63002070 63002363 -92627757 - Lx5 LINE L1 -278 6772 6475 6 1065 1713 261 39 29 chr4 63002385 63002901 -92627219 + RLTR20A2 LTR ERVK 46 566 -12 7 1065 1283 200 42 8 chr4 63002908 63003170 -92626950 - Lx5 LINE L1 -556 6494 6224 6 1065 956 273 26 1 chr4 63003145 63003387 -92626733 + Lx5 LINE L1 6765 7042 -16 8 1065 216 0 0 0 chr4 63003387 63003411 -92626709 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 9 1065 638 319 64 8 chr4 63003411 63003424 -92626696 + Lx5 LINE L1 7043 7056 -2 8 1065 235 367 101 13 chr4 63003650 63003799 -92626321 - Zaphod DNA Tip100 -3550 481 320 1 1065 450 0 0 0 chr4 63003951 63004001 -92626119 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1065 434 324 27 21 chr4 63004388 63004610 -92625510 - L1ME2z LINE L1 -574 5870 5652 1 1065 743 184 72 0 chr4 63008233 63008385 -92621735 + URR1A DNA MER1_type 64 226 0 1 1065 435 261 0 0 chr4 63008520 63008681 -92621439 + (TG)n Simple_repeat Simple_repeat 1 161 0 1 1065 234 300 14 137 chr4 63008683 63008822 -92621298 - RSINE1 SINE B4 0 165 44 1 1065 258 280 86 0 chr4 63008874 63008967 -92621153 - B1F1 SINE Alu -46 103 3 1 1065 312 148 0 0 chr4 63009216 63009277 -92620843 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1 1065 180 196 87 0 chr4 63009329 63009375 -92620745 - L2c LINE L2 -228 3159 3110 1 1065 691 242 97 14 chr4 63009795 63010009 -92620111 + MTEa LTR MaLR 12 234 -145 1 1065 272 251 87 97 chr4 63014050 63014073 -92616047 - CYRA11_Mm Unknown Y-chromosome -273 344 226 2 1065 660 174 92 20 chr4 63014073 63014225 -92615895 + URR1A DNA MER1_type 64 226 0 2 1065 398 216 8 0 chr4 63014347 63014472 -92615648 + (TG)n Simple_repeat Simple_repeat 2 127 0 2 1065 230 314 7 104 chr4 63014489 63014624 -92615496 - RSINE1 SINE B4 0 165 44 2 1065 215 252 83 48 chr4 63014659 63014768 -92615352 - PB1D7 SINE Alu 0 120 9 2 1065 229 246 66 0 chr4 63015072 63015133 -92614987 - L2b LINE L2 -204 3171 3107 2 1065 713 220 98 70 chr4 63015515 63015730 -92614390 + MTEa LTR MaLR 16 236 -143 2 1065 306 98 0 0 chr4 63016302 63016353 -92613767 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1065 201 152 0 0 chr4 63016353 63016386 -92613734 + GA-rich Low_complexity Low_complexity 2 34 0 2 1065 759 184 72 0 chr4 63019738 63019890 -92610230 + URR1A DNA MER1_type 64 226 0 2 1065 232 269 84 90 chr4 63020020 63020175 -92609945 - RSINE1 SINE B4 0 165 12 3 1065 200 111 28 0 chr4 63020182 63020218 -92609902 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1065 238 225 128 70 chr4 63020230 63020316 -92609804 - B1F1 SINE Alu -58 91 1 3 1065 205 118 59 0 chr4 63020553 63020587 -92609533 + CT-rich Low_complexity Low_complexity 2 37 0 3 1065 191 267 67 0 chr4 63020627 63020687 -92609433 - L2b LINE L2 -205 3170 3107 3 1065 663 232 99 70 chr4 63021108 63021321 -92608799 + MTEa LTR MaLR 16 234 -145 3 1065 468 341 63 18 chr4 63022171 63022485 -92607635 - L1ME2z LINE L1 -466 5978 5652 3 1065 251 259 92 103 chr4 63026087 63026110 -92604010 - CYRA11_Mm Unknown Y-chromosome -273 344 233 3 1065 686 193 73 0 chr4 63026110 63026260 -92603860 + URR1A DNA MER1_type 64 224 -2 3 1065 251 259 92 103 chr4 63026260 63026272 -92603848 - CYRA11_Mm Unknown Y-chromosome -273 232 162 3 1065 504 0 0 0 chr4 63026373 63026429 -92603691 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1065 226 307 33 43 chr4 63026435 63026527 -92603593 - RSINE1 SINE B4 -19 146 56 4 1065 269 219 134 62 chr4 63026572 63026684 -92603436 - PB1D7 SINE Alu 0 120 1 4 1065 210 271 68 0 chr4 63026994 63027053 -92603067 - L2b LINE L2 -205 3170 3108 4 1065 673 217 272 57 chr4 63027473 63027770 -92602350 + MTEa LTR MaLR 16 376 -3 4 1065 405 0 0 0 chr4 63028271 63028316 -92601804 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1065 185 211 58 0 chr4 63029973 63030025 -92600095 - MIR SINE MIR -67 141 87 4 1065 200 165 9 0 chr4 63030421 63030480 -92599640 - MIRc SINE MIR -52 156 97 4 1065 257 253 84 48 chr4 63030566 63030649 -92599471 - MIRb SINE MIR -66 202 117 4 1065 361 338 76 31 chr4 63030768 63031122 -92598998 + L1MC3 LINE L1 7416 7785 0 4 1065 213 108 0 0 chr4 63031168 63031205 -92598915 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1065 367 272 58 0 chr4 63032643 63032746 -92597374 + MIRb SINE MIR 12 120 -148 5 1065 206 183 16 48 chr4 63033471 63033534 -92596586 + A-rich Low_complexity Low_complexity 6 66 0 5 1065 602 308 14 104 chr4 63033545 63033777 -92596343 + B4A SINE B4 1 208 -84 5 1065 2245 134 93 45 chr4 63033777 63034176 -92595944 + MTC LTR MaLR 4 421 0 5 1065 602 308 14 104 chr4 63034176 63034222 -92595898 + B4A SINE B4 209 254 -38 5 1065 279 0 0 0 chr4 63034255 63034286 -92595834 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1065 420 159 0 0 chr4 63035818 63035887 -92594233 + PB1D7 SINE Alu 41 109 -11 5 1065 414 0 0 0 chr4 63037203 63037249 -92592871 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1065 302 304 10 19 chr4 63037474 63037578 -92592542 - PB1D10 SINE Alu -14 103 1 5 1065 564 263 39 39 chr4 63038127 63038309 -92591811 - B3A SINE B2 -16 182 1 5 1065 840 233 32 28 chr4 63038322 63038538 -92591582 - B4 SINE B4 -69 223 7 5 1065 365 220 43 52 chr4 63040500 63040615 -92589505 + MIRb SINE MIR 40 153 -115 6 1065 202 200 0 0 chr4 63041041 63041086 -92589034 + CT-rich Low_complexity Low_complexity 1 45 0 6 1065 245 375 0 35 chr4 63042585 63042701 -92587419 + L2b LINE L2 3263 3374 -1 6 1065 258 250 83 67 chr4 63043056 63043190 -92586930 + MIR SINE MIR 16 150 -118 6 1065 232 333 0 53 chr4 63044024 63044138 -92585982 - MIR SINE MIR -148 114 7 6 1065 299 271 148 24 chr4 63044522 63044716 -92585404 + MIRb SINE MIR 16 220 -48 6 1065 279 320 0 0 chr4 63045508 63045586 -92584534 + ID4_ SINE ID 2 79 -4 6 1065 369 0 0 0 chr4 63045587 63045628 -92584492 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1066 984 141 0 26 chr4 63045657 63045810 -92584310 + B1_Mur1 SINE Alu 1 149 0 6 1066 32 0 0 0 chr4 63045961 63045993 -92584127 + AT_rich Low_complexity Low_complexity 1 32 0 6 1066 267 157 0 0 chr4 63046000 63046051 -92584069 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1066 597 307 0 7 chr4 63046084 63046238 -92583882 - RSINE1 SINE B4 -10 155 3 7 1066 414 275 18 18 chr4 63046326 63046437 -92583683 - PB1D7 SINE Alu 0 120 10 7 1066 280 314 65 70 chr4 63047662 63047861 -92582259 + MIRc SINE MIR 16 213 -55 7 1066 2024 208 20 10 chr4 63048433 63048840 -92581280 - Lx6 LINE L1 -5 7455 7045 7 1066 1251 233 72 52 chr4 63049505 63049868 -92580252 + ORR1D2 LTR MaLR 1 370 0 7 1066 334 301 16 0 chr4 63049869 63049992 -92580128 + (CACCAT)n Simple_repeat Simple_repeat 6 130 0 7 1066 195 273 45 15 chr4 63051194 63051261 -92578859 + MIR SINE MIR 25 93 -169 7 1066 783 289 76 40 chr4 63053243 63053520 -92576600 + B4 SINE B4 6 292 0 7 1066 350 297 0 11 chr4 63053735 63053827 -92576293 + B4A SINE B4 6 96 -196 7 1066 712 217 0 0 chr4 63053829 63053958 -92576162 + B1_Mur3 SINE Alu 2 130 -19 8 1066 227 230 51 63 chr4 63053958 63054026 -92576094 + B4A SINE B4 52 119 -173 8 1066 1053 235 9 5 chr4 63054147 63054361 -92575759 + B3 SINE B2 2 216 0 8 1066 234 128 0 0 chr4 63054371 63054410 -92575710 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 8 1066 840 263 28 32 chr4 63055260 63055476 -92574644 - ID_B1 SINE B4 -9 215 1 8 1066 250 312 21 10 chr4 63056840 63056937 -92573183 + L2 LINE L2 2477 2574 -845 8 1066 493 231 12 0 chr4 63057321 63057494 -92572626 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 8 1066 247 254 42 14 chr4 63058121 63058193 -92571927 + B2_Mm2 SINE B2 1 74 -121 8 1066 489 17 0 0 chr4 63058194 63058252 -92571868 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1066 251 288 62 12 chr4 63058426 63058507 -92571613 - MIRc SINE MIR -108 160 76 8 1066 563 320 93 80 chr4 63059728 63060240 -92569880 + L1MB5 LINE L1 5632 6174 0 9 1066 288 0 0 0 chr4 63061096 63061128 -92568992 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1066 705 207 39 26 chr4 63061387 63061541 -92568579 + RSINE1 SINE B4 3 158 -7 9 1066 585 257 134 40 chr4 63061595 63061842 -92568278 + B4 SINE B4 1 270 -22 9 1066 573 88 0 0 chr4 63063315 63063395 -92566725 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1066 236 301 43 99 chr4 63067525 63067687 -92562433 + MIRb SINE MIR 87 239 -29 9 1066 266 218 73 95 chr4 63068009 63068146 -92561974 + RMER17D LTR ERVK 393 526 -363 9 1066 863 99 28 28 chr4 63068364 63068509 -92561611 + B1_Mur4 SINE Alu 6 150 0 9 1066 240 254 0 0 chr4 63068644 63068778 -92561342 + (CA)n Simple_repeat Simple_repeat 1 134 0 9 1066 375 60 0 0 chr4 63068785 63068835 -92561285 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 9 1066 438 88 0 0 chr4 63068837 63068905 -92561215 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1066 242 215 61 15 chr4 63069163 63069229 -92560891 - MIRc SINE MIR -122 146 78 1 1066 297 252 108 23 chr4 63072610 63072740 -92557380 - MIRb SINE MIR -127 141 1 1 1066 504 267 108 32 chr4 63072912 63073098 -92557022 + MTD LTR MaLR 1 200 -219 1 1066 611 237 50 0 chr4 63073116 63073255 -92556865 + MTD LTR MaLR 267 412 -7 1 1066 513 0 0 0 chr4 63073367 63073424 -92556696 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1066 320 222 97 0 chr4 63073623 63073695 -92556425 + PB1D10 SINE Alu 34 112 -5 1 1066 1166 62 14 0 chr4 63073786 63073930 -92556190 + B1_Mus1 SINE Alu 1 146 -2 1 1066 207 0 0 0 chr4 63073930 63073953 -92556167 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1066 186 71 0 0 chr4 63073968 63073996 -92556124 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1066 967 293 43 7 chr4 63075388 63075670 -92554450 - B4 SINE B4 0 292 1 1 1066 189 0 0 0 chr4 63076102 63076123 -92553997 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 1066 275 289 1 15 chr4 63080222 63080332 -92549788 - MIR SINE MIR -95 173 67 1 1066 588 285 97 29 chr4 63080727 63080904 -92549216 - ID_B1 SINE B4 -2 222 31 1 1066 264 100 0 0 chr4 63080904 63080944 -92549176 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 1066 588 285 97 29 chr4 63080944 63080972 -92549148 - ID SINE ID -194 30 3 1 1066 226 217 43 14 chr4 63082418 63082488 -92547632 + L2b LINE L2 2992 3063 -312 1 1066 254 179 18 18 chr4 63082473 63082530 -92547590 + MIRc SINE MIR 63 119 -149 1 1066 2132 169 76 5 chr4 63083191 63083425 -92546695 + MTC LTR MaLR 1 251 -170 1 1066 273 29 0 0 chr4 63083425 63083459 -92546661 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1066 2132 169 76 5 chr4 63083459 63083617 -92546503 + MTC LTR MaLR 252 420 -1 1 1066 246 242 87 24 chr4 63083970 63084110 -92546010 - MIRc SINE MIR -57 151 2 1 1066 378 0 0 0 chr4 63084594 63084636 -92545484 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1066 235 372 0 98 chr4 63085857 63086021 -92544099 + ORR1D2 LTR MaLR 8 155 -204 1 1066 328 373 66 48 chr4 63085997 63086270 -92543850 + ORR1D2 LTR MaLR 89 366 -4 1 1066 1408 193 69 4 chr4 63088080 63088356 -92541764 + ORR1C1 LTR MaLR 85 378 0 1 1066 236 312 21 0 chr4 63088407 63088500 -92541620 - MIR SINE MIR -61 147 53 1 1066 253 363 36 53 chr4 63088804 63089015 -92541105 + L2b LINE L2 2917 3120 -255 1 1066 364 316 14 41 chr4 63089295 63089455 -92540665 + MIR3 SINE MIR 37 193 -83 1 1066 254 271 162 36 chr4 63089695 63089806 -92540314 - L2c LINE L2 -223 3164 3040 1 1066 235 364 80 6 chr4 63089796 63089959 -92540161 - MIRb SINE MIR -61 207 33 1 1066 182 311 111 0 chr4 63090375 63090465 -92539655 - MIRc SINE MIR -99 169 70 1 1066 656 150 192 0 chr4 63092059 63092179 -92537941 + B1_Mur1 SINE Alu 2 144 -5 1 1066 548 255 100 7 chr4 63092506 63092656 -92537464 - RSINE1 SINE B4 0 165 2 1 1066 261 295 47 9 chr4 63094605 63094711 -92535409 + L2b LINE L2 3224 3333 -42 1 1066 1962 125 26 3 chr4 63094808 63095120 -92535000 + ORR1A2 LTR MaLR 2 320 -7 1 1066 284 223 147 11 chr4 63095279 63095374 -92534746 + B1F2 SINE Alu 6 113 -36 1 1066 228 303 81 31 chr4 63095751 63095911 -92534209 - Charlie8 DNA MER1_type -2220 208 41 1 1066 228 321 151 0 chr4 63096674 63096780 -92533340 - MIRc SINE MIR -130 138 17 1 1066 644 164 257 0 chr4 63096955 63097107 -92533013 - B3A SINE B2 0 198 8 1 1066 243 0 0 0 chr4 63097178 63097205 -92532915 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1066 225 257 84 14 chr4 63098041 63098112 -92532008 + MIR SINE MIR 14 89 -173 1 1066 1682 180 62 49 chr4 63099493 63099861 -92530259 + ORR1D1 LTR MaLR 1 373 -1 1 1066 348 83 0 0 chr4 63101932 63101980 -92528140 + (GGA)n Simple_repeat Simple_repeat 1 48 0 1 1066 388 270 35 26 chr4 63101993 63102107 -92528013 + PB1D10 SINE Alu 2 116 -1 1 1066 248 325 34 34 chr4 63103144 63103262 -92526858 - MIRb SINE MIR -98 170 53 1 1066 566 12 84 0 chr4 63103637 63103720 -92526400 - RLTR13D3 LTR ERVK -213 901 812 1 1066 1599 68 5 0 chr4 63103720 63103942 -92526178 + RLTR13D3 LTR ERVK 892 1114 0 1 1066 615 281 71 48 chr4 63104582 63104851 -92525269 + B4 SINE B4 2 276 -16 1 1066 770 113 28 0 chr4 63104893 63105035 -92525085 + (GGGA)n Simple_repeat Simple_repeat 3 148 0 1 1066 359 352 147 36 chr4 63105783 63106143 -92523977 + L1MC2 LINE L1 5940 6339 -5 1 1066 243 118 0 89 chr4 63106218 63106255 -92523865 + T-rich Low_complexity Low_complexity 19 51 0 1 1066 1246 29 0 0 chr4 63106255 63106395 -92523725 - B1_Mus2 SINE Alu -7 140 1 1 1066 243 118 0 89 chr4 63106395 63106413 -92523707 + T-rich Low_complexity Low_complexity 1 18 0 1 1066 547 222 24 8 chr4 63106481 63106608 -92523512 - B1F1 SINE Alu -14 135 7 1 1066 256 360 55 23 chr4 63106509 63106637 -92523483 - B4 SINE B4 -96 196 65 1 1066 375 197 79 0 chr4 63107271 63107347 -92522773 - MTEa LTR MaLR -6 373 292 1 1066 2096 144 28 11 chr4 63107348 63107705 -92522415 - ORR1D1 LTR MaLR -11 363 1 1 1066 530 271 91 70 chr4 63107873 63108182 -92521938 + MLT1A LTR MaLR 81 374 0 1 1066 582 28 0 0 chr4 63108251 63108323 -92521797 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1066 441 36 0 0 chr4 63108323 63108377 -92521743 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1066 493 257 91 22 chr4 63108393 63108655 -92521465 + L1MC LINE L1 5329 5613 -551 1 1066 447 366 0 6 chr4 63108898 63109060 -92521060 + RSINE1 SINE B4 3 163 -2 1 1066 349 225 24 24 chr4 63109117 63109199 -92520921 - RSINE1 SINE B4 -72 93 12 1 1066 510 244 186 18 chr4 63109242 63109409 -92520711 - ID_B1 SINE B4 -21 203 9 1 1066 530 330 45 9 chr4 63109418 63109638 -92520482 - MLT1D LTR MaLR -83 422 195 1 1066 580 261 91 0 chr4 63109979 63110144 -92519976 - B3A SINE B2 -18 180 1 1 1066 373 263 30 29 chr4 63110483 63110637 -92519483 - MTEa LTR MaLR -19 400 264 1 1066 225 337 52 42 chr4 63110649 63110745 -92519375 - MTEa LTR MaLR -262 97 1 1 1066 1315 218 20 60 chr4 63110792 63111143 -92518977 + RLTR17 LTR ERVK 105 441 -251 1 1066 1659 219 32 43 chr4 63111291 63111639 -92518481 - ORR1D1 LTR MaLR -1 373 29 1 1066 1822 177 40 30 chr4 63111639 63112012 -92518108 + ORR1C1 LTR MaLR 1 377 -1 1 1066 1641 219 32 43 chr4 63112012 63112036 -92518084 - ORR1D1 LTR MaLR -346 28 5 1 1066 322 278 165 107 chr4 63112313 63112688 -92517432 + RMER10A LTR ERVL 18 414 -28 1 1066 1637 167 89 20 chr4 63112763 63113109 -92517011 + ORR1C1 LTR MaLR 8 377 -2 1 1066 249 290 30 82 chr4 63113439 63113574 -92516546 + L1M5 LINE L1 5731 5858 -266 1 1066 243 0 0 0 chr4 63113725 63113752 -92516368 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1066 230 173 39 0 chr4 63113770 63113822 -92516298 + L1M5 LINE L1 5864 5917 -262 1 1066 299 254 250 70 chr4 63114075 63114263 -92515857 + B4A SINE B4 6 227 -65 1 1066 300 278 0 72 chr4 63114844 63114941 -92515179 + ID_B1 SINE B4 134 223 -1 1 1066 283 154 44 0 chr4 63115619 63115688 -92514432 + MIRc SINE MIR 53 131 -131 1 1066 189 305 12 35 chr4 63115689 63115774 -92514346 + MIR SINE MIR 180 262 0 1 1066 224 180 40 0 chr4 63116086 63116136 -92513984 + MIRm SINE MIR 85 136 -140 1 1066 234 0 0 0 chr4 63117111 63117137 -92512983 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1066 598 262 87 0 chr4 63117182 63117365 -92512755 + ID_B1 SINE B4 5 203 -21 1 1066 861 103 0 0 chr4 63117386 63117512 -92512608 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1066 291 282 12 12 chr4 63117518 63117604 -92512516 - B1F1 SINE Alu -56 93 8 1 1066 1018 137 213 33 chr4 63117707 63118007 -92512113 + RMER10A LTR ERVL 19 364 -78 1 1066 375 276 69 63 chr4 63118101 63118275 -92511845 - B4 SINE B4 -116 176 2 1 1066 283 322 124 28 chr4 63118308 63118631 -92511489 - L1MC LINE L1 -2406 3740 3387 1 1066 206 233 102 23 chr4 63119231 63119319 -92510801 - L2b LINE L2 -18 3357 3263 1 1066 681 76 0 0 chr4 63119896 63119988 -92510132 + (TCCC)n Simple_repeat Simple_repeat 1 92 0 1 1066 399 257 37 86 chr4 63120057 63120244 -92509876 + MIRb SINE MIR 88 265 -3 1 1066 315 0 0 0 chr4 63121044 63121079 -92509041 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1066 561 30 0 0 chr4 63121079 63121145 -92508975 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1066 230 257 67 67 chr4 63121250 63121325 -92508795 - Lx8 LINE L1 -266 7207 7133 1 1066 632 307 145 14 chr4 63121327 63121624 -92508496 - MLT1A0 LTR MaLR -26 339 4 1 1066 207 0 0 0 chr4 63121672 63121695 -92508425 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1066 444 73 29 0 chr4 63121695 63121763 -92508357 - B1_Mur4 SINE Alu -1 149 80 1 1066 420 20 0 0 chr4 63122605 63122654 -92507466 + (CCCTG)n Simple_repeat Simple_repeat 3 51 0 1 1066 872 144 190 22 chr4 63123537 63123721 -92506399 - B3 SINE B2 -1 215 1 1 1066 185 309 152 20 chr4 63123889 63123988 -92506132 + MIR SINE MIR 82 193 -69 1 1066 448 278 84 11 chr4 63125233 63125411 -92504709 - MLT1D LTR MaLR -269 236 46 1 1066 210 37 0 0 chr4 63125418 63125445 -92504675 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1066 1064 52 7 0 chr4 63125856 63125991 -92504129 + B1_Mus1 SINE Alu 2 137 -11 1 1066 612 40 0 0 chr4 63128762 63128837 -92501283 + (GGA)n Simple_repeat Simple_repeat 3 77 0 1 1066 726 278 0 78 chr4 63128934 63129164 -92500956 + B4A SINE B4 1 212 -80 1 1066 2098 177 42 25 chr4 63129320 63129726 -92500394 - MTC LTR MaLR -8 413 1 2 1066 888 254 10 0 chr4 63129845 63130038 -92500082 + B3 SINE B2 1 195 -21 2 1066 193 300 33 16 chr4 63130281 63130342 -92499778 - MIRb SINE MIR -149 119 58 2 1066 238 285 43 146 chr4 63130775 63130960 -92499160 + MLT1A LTR MaLR 3 168 -206 2 1066 204 40 0 0 chr4 63131887 63131912 -92498208 + (GGA)n Simple_repeat Simple_repeat 3 27 0 2 1066 2218 194 94 101 chr4 63132606 63133339 -92496781 + RMER17B LTR ERVK 1 728 -230 2 1066 240 274 0 0 chr4 63133438 63133500 -92496620 + RMER17B LTR ERVK 897 958 0 2 1066 549 243 170 18 chr4 63134091 63134309 -92495811 + MER68 LTR ERVL 13 263 -300 2 1066 238 299 115 0 chr4 63134326 63134413 -92495707 + MER68 LTR ERVL 321 417 -146 2 1066 456 344 48 48 chr4 63134543 63134833 -92495287 + B4A SINE B4 1 290 -2 2 1066 621 259 33 47 chr4 63134867 63135038 -92495082 + MER2 DNA MER2_type 87 255 -90 2 1066 682 248 0 18 chr4 63135038 63135202 -92494918 - RSINE1 SINE B4 0 165 5 2 1066 621 259 33 47 chr4 63135202 63135241 -92494879 + MER2 DNA MER2_type 256 294 -51 2 1066 233 224 14 95 chr4 63135273 63135347 -92494773 + MER68 LTR ERVL 489 556 -7 2 1066 199 0 65 0 chr4 63135513 63135544 -92494576 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1066 396 285 95 49 chr4 63136275 63136539 -92493581 + MLT1B LTR MaLR 76 379 -11 2 1066 246 295 37 75 chr4 63136721 63136882 -92493238 + L1ME4a LINE L1 5967 6121 -3 2 1066 1219 74 17 0 chr4 63137484 63137660 -92492460 + B2_Mm1a SINE B2 15 193 0 2 1066 216 97 0 0 chr4 63140820 63140851 -92489269 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 2 1066 326 290 37 9 chr4 63140861 63140969 -92489151 - PB1D10 SINE Alu -1 116 6 2 1066 218 264 13 7 chr4 63141339 63141418 -92488702 - MIR SINE MIR -93 115 39 2 1066 324 0 0 0 chr4 63142404 63142440 -92487680 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1066 575 258 13 19 chr4 63142548 63142706 -92487414 + B3A SINE B2 7 163 -35 2 1066 259 259 69 114 chr4 63142887 63143018 -92487102 - B4A SINE B4 -144 148 24 2 1066 533 226 96 15 chr4 63143082 63143217 -92486903 - B1_Mur3 SINE Alu -3 146 1 2 1066 26 50 0 0 chr4 63143286 63143326 -92486794 + AT_rich Low_complexity Low_complexity 1 40 0 2 1066 376 287 69 8 chr4 63143961 63144091 -92486029 + Lx8 LINE L1 7158 7295 -178 2 1066 212 86 29 0 chr4 63144806 63144841 -92485279 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 2 1066 328 321 71 42 chr4 63145289 63145595 -92484525 + L1M5 LINE L1 5429 5744 -429 2 1066 703 260 25 20 chr4 63145887 63146083 -92484037 - B3 SINE B2 0 216 20 2 1066 231 289 47 101 chr4 63146158 63146327 -92483793 - RSINE1 SINE B4 -2 163 4 2 1066 198 0 0 0 chr4 63146382 63146404 -92483716 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1066 696 200 20 7 chr4 63146708 63146854 -92483266 + B1_Mur1 SINE Alu 1 148 -1 2 1066 261 0 0 0 chr4 63146862 63146891 -92483229 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1066 468 91 0 0 chr4 63147368 63147434 -92482686 + (GGA)n Simple_repeat Simple_repeat 2 67 0 2 1066 208 218 182 0 chr4 63148607 63148700 -92481420 - MIR SINE MIR -141 127 20 2 1066 848 228 27 18 chr4 63148805 63149024 -92481096 - ID_B1 SINE B4 -3 221 1 2 1066 369 281 96 7 chr4 63149258 63149394 -92480726 - B1F SINE Alu -1 148 1 2 1066 229 120 39 20 chr4 63151053 63151104 -92479016 + A-rich Low_complexity Low_complexity 2 53 0 2 1066 357 24 0 0 chr4 63152002 63152044 -92478076 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1066 348 24 0 0 chr4 63152315 63152356 -92477764 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1066 300 53 0 0 chr4 63152931 63152969 -92477151 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1066 262 264 18 62 chr4 63153648 63153761 -92476359 - FordPrefect DNA Tip100 -332 1351 1244 2 1066 215 31 0 30 chr4 63156176 63156209 -92473911 + (CCG)n Simple_repeat Simple_repeat 1 32 0 2 1066 25 65 0 0 chr4 63156269 63156315 -92473805 + GC_rich Low_complexity Low_complexity 1 46 0 2 1066 21 57 0 0 chr4 63156947 63156982 -92473138 + GC_rich Low_complexity Low_complexity 1 35 0 2 1066 213 195 0 0 chr4 63157090 63157131 -92472989 + C-rich Low_complexity Low_complexity 1 41 0 2 1066 195 100 0 0 chr4 63157634 63157664 -92472456 + (G)n Simple_repeat Simple_repeat 1 30 0 2 1066 232 320 62 62 chr4 63158215 63158345 -92471775 - L2b LINE L2 -2 3373 3244 2 1066 594 252 14 7 chr4 63158452 63158596 -92471524 + RSINE1 SINE B4 3 147 -18 2 1066 469 260 29 0 chr4 63159767 63159871 -92470249 - B1F SINE Alu -6 143 37 2 1066 378 42 0 0 chr4 63160138 63160186 -92469934 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1066 305 332 30 61 chr4 63160212 63160466 -92469654 - ORR1E LTR MaLR -144 230 2 2 1066 195 388 41 46 chr4 63160748 63160967 -92469153 - MIR SINE MIR -40 222 5 2 1066 195 316 12 12 chr4 63161642 63161722 -92468398 + MIRc SINE MIR 70 149 -119 2 1066 266 295 103 48 chr4 63162758 63162817 -92467303 + MIRb SINE MIR 84 145 -123 2 1066 999 68 0 0 chr4 63162817 63162949 -92467171 + (GA)n Simple_repeat Simple_repeat 2 133 0 2 1066 266 295 103 48 chr4 63162949 63163035 -92467085 + MIRb SINE MIR 146 237 -31 2 1066 913 224 94 5 chr4 63163070 63163272 -92466848 + ID_B1 SINE B4 3 222 -2 2 1066 212 330 72 18 chr4 63163384 63163495 -92466625 + MIR3 SINE MIR 85 201 -7 2 1066 405 0 0 0 chr4 63163499 63163544 -92466576 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1066 634 185 25 8 chr4 63163544 63163664 -92466456 - RSINE1 SINE B4 -41 124 3 2 1066 448 295 9 133 chr4 63164299 63164510 -92465610 + B4 SINE B4 1 185 -107 2 1066 498 33 0 0 chr4 63164857 63164917 -92465203 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 2 1066 450 181 172 0 chr4 63165217 63165333 -92464787 - MTD LTR MaLR -1 378 243 2 1066 252 188 13 80 chr4 63165339 63165414 -92464706 + MERVL_2A-int LTR ERVL 4550 4619 -1142 2 1066 1039 254 168 20 chr4 63165468 63165916 -92464204 - RLTR11A2 LTR ERVK 0 527 1 2 1066 676 286 49 9 chr4 63165917 63166143 -92463977 - MTD LTR MaLR -184 235 1 2 1066 448 37 0 5 chr4 63166297 63166362 -92463758 - B2_Mm2 SINE B2 -107 109 47 2 1066 1043 71 103 0 chr4 63166394 63166549 -92463571 - B2_Mm1t SINE B2 -22 171 1 2 1066 3125 262 37 16 chr4 63166654 63167202 -92462918 - Lx8 LINE L1 -4 7469 6910 2 1066 2258 102 12 58 chr4 63167202 63167545 -92462575 + ORR1A2 LTR MaLR 1 327 0 2 1066 3125 262 37 16 chr4 63167545 63167867 -92462253 - Lx8 LINE L1 -564 6909 6581 2 1066 261 328 92 15 chr4 63167901 63168031 -92462089 - MIRb SINE MIR -18 250 111 2 1066 626 105 0 9 chr4 63168196 63168302 -92461818 + (TC)n Simple_repeat Simple_repeat 2 106 0 2 1066 626 275 81 7 chr4 63168535 63168779 -92461341 + L1M5 LINE L1 5397 5656 -538 2 1066 307 194 16 31 chr4 63169028 63169092 -92461028 - MLT1C LTR MaLR -293 174 112 2 1066 392 244 30 52 chr4 63169085 63169219 -92460901 + CYRA11_Mm Unknown Y-chromosome 181 311 -306 2 1066 867 155 191 0 chr4 63169104 63169272 -92460848 - URR1B DNA MER1_type -25 200 1 2 1066 580 247 41 41 chr4 63169371 63169540 -92460580 + B3 SINE B2 34 202 -14 2 1066 1020 111 0 0 chr4 63169545 63169698 -92460422 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 2 1066 233 269 45 0 chr4 63170229 63170296 -92459824 - MLT1B LTR MaLR -23 657 588 2 1066 270 265 92 79 chr4 63170427 63170591 -92459529 - MLT1B LTR MaLR -176 214 49 2 1066 1253 76 70 0 chr4 63170907 63171079 -92459041 - B2_Mm2 SINE B2 -7 188 5 2 1066 705 245 103 0 chr4 63171589 63171613 -92458507 - B3 SINE B2 -10 206 175 2 1066 449 0 36 0 chr4 63171613 63171669 -92458451 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2 1066 705 245 103 0 chr4 63171669 63171828 -92458292 - B3 SINE B2 -42 174 5 2 1066 329 303 15 2 chr4 63172036 63172121 -92457999 + PB1D10 SINE Alu 3 92 -55 2 1066 226 219 79 40 chr4 63172603 63172679 -92457441 + ORR1E LTR MaLR 270 348 -11 2 1066 383 248 166 75 chr4 63173637 63173830 -92456290 + MTE2b LTR MaLR 1 210 -149 2 1066 563 227 33 94 chr4 63173864 63174044 -92456076 + MTE2b LTR MaLR 211 379 0 2 1066 343 384 87 23 chr4 63174151 63174384 -92455736 + MLT1K LTR MaLR 155 405 -190 2 1066 1055 125 0 11 chr4 63174384 63174562 -92455558 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 2 1066 343 384 87 23 chr4 63174562 63174592 -92455528 + MLT1K LTR MaLR 406 435 -160 2 1066 366 156 0 0 chr4 63174592 63174656 -92455464 + GA-rich Low_complexity Low_complexity 3 66 0 2 1066 226 261 0 0 chr4 63175306 63175352 -92454768 - L2c LINE L2 -232 3155 3110 2 1066 1304 111 11 0 chr4 63175390 63175580 -92454540 - B2_Mm1t SINE B2 0 193 2 2 1066 265 260 87 73 chr4 63176020 63176214 -92453906 - MLT1L LTR MaLR -69 541 237 2 1066 546 243 40 40 chr4 63176532 63176682 -92453438 + ID_B1 SINE B4 73 222 -2 2 1067 218 388 74 7 chr4 63177233 63177368 -92452752 - MIR SINE MIR -116 146 3 2 1067 399 212 50 0 chr4 63178029 63178109 -92452011 + MTE2b LTR MaLR 1 84 -295 2 1067 1302 250 77 25 chr4 63178219 63178584 -92451536 + Lx8 LINE L1 6954 7337 -136 2 1067 1052 251 72 23 chr4 63178588 63178853 -92451267 + MTE2b LTR MaLR 101 378 -1 2 1067 260 303 17 124 chr4 63179551 63179728 -92450392 - MIR SINE MIR -38 224 67 2 1067 413 291 139 33 chr4 63179901 63180203 -92449917 + L1MEc LINE L1 320 653 -5747 2 1067 365 337 0 0 chr4 63180203 63180301 -92449819 + ID_B1 SINE B4 70 167 -57 2 1067 536 259 0 26 chr4 63180220 63180335 -92449785 + PB1D10 SINE Alu 6 117 0 2 1067 282 265 9 64 chr4 63180337 63180446 -92449674 + L1MEc LINE L1 656 758 -5642 2 1067 538 307 58 13 chr4 63180565 63180720 -92449400 - MLT1A0 LTR MaLR -49 316 155 2 1067 1673 231 39 0 chr4 63180722 63181077 -92449043 + ORR1D1 LTR MaLR 1 369 -5 2 1067 924 261 107 35 chr4 63181290 63181580 -92448540 + MLT1A0 LTR MaLR 1 311 -54 2 1067 2031 298 93 20 chr4 63181644 63182489 -92447631 - Lx8 LINE L1 -6 7467 6561 2 1067 236 349 15 8 chr4 63182727 63182857 -92447263 + L1M5 LINE L1 5617 5747 -417 2 1067 237 186 0 0 chr4 63183337 63183380 -92446740 + L1M5 LINE L1 5786 5828 -351 2 1067 547 257 9 9 chr4 63183382 63183496 -92446624 + PB1D10 SINE Alu 3 116 -1 3 1067 4064 75 0 11 chr4 63183929 63184466 -92445654 + L1Md_F2 LINE L1 6052 6582 0 3 1067 625 153 44 26 chr4 63184719 63184833 -92445287 + B1F1 SINE Alu 3 118 -31 3 1067 579 194 91 23 chr4 63184833 63184851 -92445269 + ID_B1 SINE B4 84 224 0 3 1067 216 250 0 0 chr4 63185015 63185059 -92445061 + PB1D10 SINE Alu 28 71 -46 3 1067 873 203 65 10 chr4 63185462 63185661 -92444459 - B3 SINE B2 0 216 7 3 1067 221 321 0 23 chr4 63185584 63185670 -92444450 - RSINE1 SINE B4 -79 86 3 3 1067 207 0 0 0 chr4 63185824 63185847 -92444273 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1067 326 257 15 175 chr4 63185895 63186032 -92444088 + MLT1A LTR MaLR 16 130 -244 3 1067 344 307 133 8 chr4 63186050 63186178 -92443942 + ID_B1 SINE B4 80 223 -1 3 1067 483 286 57 101 chr4 63186195 63186491 -92443629 + B4A SINE B4 5 287 -5 3 1067 252 0 0 0 chr4 63186506 63186534 -92443586 + (CAA)n Simple_repeat Simple_repeat 3 30 0 3 1067 296 292 49 59 chr4 63188064 63188166 -92441954 - L2b LINE L2 -4 3371 3271 3 1067 434 303 60 8 chr4 63188294 63188427 -92441693 + MER58A DNA MER1_type 16 155 -69 3 1067 821 251 49 95 chr4 63188469 63188555 -92441565 - B4A SINE B4 0 292 220 3 1067 904 249 20 69 chr4 63188555 63188861 -92441259 - B4A SINE B4 0 292 2 3 1067 821 251 49 95 chr4 63188861 63189078 -92441042 - B4A SINE B4 -73 219 3 3 1067 423 55 63 18 chr4 63191016 63191127 -92438993 + (TA)n Simple_repeat Simple_repeat 2 117 0 3 1067 483 259 45 83 chr4 63191141 63191297 -92438823 - B4A SINE B4 0 292 143 3 1067 209 213 42 21 chr4 63193038 63193086 -92437034 + L2a LINE L2 3372 3420 -6 3 1067 369 0 0 0 chr4 63193245 63193286 -92436834 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1067 1145 69 14 0 chr4 63193333 63193478 -92436642 + B1_Mus1 SINE Alu 2 148 0 3 1067 632 268 70 7 chr4 63193502 63193645 -92436475 + MTE2a LTR MaLR 213 364 -15 3 1067 729 241 0 0 chr4 63193651 63193796 -92436324 + B1_Mm SINE Alu 2 146 -1 3 1067 885 119 63 0 chr4 63194319 63194445 -92435675 - B1_Mus2 SINE Alu -9 138 5 3 1067 399 350 27 76 chr4 63194600 63194823 -92435297 - MER21B LTR ERV1 -187 676 465 3 1067 321 249 148 108 chr4 63195017 63195220 -92434900 - B4 SINE B4 0 292 82 3 1067 269 286 127 55 chr4 63195215 63195281 -92434839 - B3A SINE B2 -4 194 1 3 1067 375 313 61 0 chr4 63195281 63195396 -92434724 - B4 SINE B4 -170 122 1 3 1067 338 312 15 60 chr4 63195396 63195518 -92434602 - MER21B LTR ERV1 -747 116 1 3 1067 330 275 109 9 chr4 63196214 63196324 -92433796 - Tigger9b DNA MER2_type 0 624 504 3 1067 222 262 180 0 chr4 63196336 63196397 -92433723 + ID4_ SINE ID 2 73 -10 3 1067 297 0 0 0 chr4 63196439 63196472 -92433648 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1067 1479 158 94 36 chr4 63196484 63196804 -92433316 - ORR1B1 LTR MaLR -14 407 41 3 1067 455 231 62 44 chr4 63196825 63197048 -92433072 - Tigger9b DNA MER2_type -162 462 196 3 1067 1128 309 98 59 chr4 63197073 63197685 -92432435 + MER92B LTR ERV1 1 636 0 3 1067 594 309 13 0 chr4 63197688 63197837 -92432283 - Tigger9b DNA MER2_type -451 173 23 3 1067 186 43 0 0 chr4 63197918 63197941 -92432179 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1067 508 252 39 8 chr4 63197947 63198075 -92432045 - B1F SINE Alu 0 149 18 3 1067 327 221 26 13 chr4 63198512 63198590 -92431530 + ID2 SINE ID 3 81 -2 3 1067 228 277 113 40 chr4 63198995 63199119 -92431001 - MIRb SINE MIR -56 212 80 3 1067 1691 75 0 30 chr4 63199220 63199453 -92430667 + L1_Mus1 LINE L1 6342 6567 0 3 1067 444 276 16 31 chr4 63199815 63199942 -92430178 + Tigger7 DNA MER2_type 42 166 -2325 3 1067 1949 167 35 0 chr4 63199987 63200305 -92429815 - ORR1B1 LTR MaLR -8 386 58 3 1067 851 254 38 73 chr4 63200310 63200859 -92429261 - RLTR11B LTR ERVK -29 499 2 3 1067 244 183 50 0 chr4 63200866 63200926 -92429194 - ORR1B1 LTR MaLR -331 63 1 3 1067 1470 134 44 9 chr4 63201006 63201300 -92428820 + MTC LTR MaLR 1 421 0 3 1067 233 135 0 0 chr4 63201305 63201342 -92428778 - B3A SINE B2 -161 37 1 3 1067 706 257 134 0 chr4 63201344 63201657 -92428463 - L1MB1 LINE L1 -103 6065 5703 3 1067 440 185 12 12 chr4 63202535 63202617 -92427503 - MTEa LTR MaLR -2 377 296 3 1067 230 159 48 0 chr4 63202638 63202701 -92427419 + (TATAA)n Simple_repeat Simple_repeat 2 67 0 3 1067 297 0 0 0 chr4 63202742 63202775 -92427345 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1067 222 91 0 0 chr4 63202776 63202809 -92427311 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1067 548 246 72 0 chr4 63202810 63202948 -92427172 - RSINE1 SINE B4 -13 152 5 3 1067 244 227 30 0 chr4 63202954 63203020 -92427100 - L1M4 LINE L1 -369 5809 5742 3 1067 257 217 79 44 chr4 63203412 63203499 -92426621 + MIRc SINE MIR 58 152 -116 3 1067 825 319 53 90 chr4 63203636 63204159 -92425961 + RMER5 LTR ERV1 16 519 -15 3 1067 2309 15 0 4 chr4 63204306 63204568 -92425552 + L1Md_F3 LINE L1 6310 6570 -14 3 1067 312 261 33 43 chr4 63204633 63204725 -92425395 - RSINE1 SINE B4 0 165 75 3 1067 243 275 12 59 chr4 63204873 63204958 -92425162 + ID4 SINE ID 2 82 -1 3 1067 818 160 7 27 chr4 63205120 63205268 -92424852 - B1_Mus1 SINE Alu 0 148 4 3 1067 273 212 106 96 chr4 63205295 63205389 -92424731 - PB1D10 SINE Alu -13 104 10 3 1067 457 100 38 0 chr4 63205677 63205757 -92424363 + (CCCCG)n Simple_repeat Simple_repeat 2 84 0 3 1067 225 65 0 0 chr4 63206399 63206430 -92423690 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1067 395 206 35 30 chr4 63207254 63207380 -92422740 - PB1D9 SINE Alu -18 129 5 3 1067 274 176 400 0 chr4 63207882 63207967 -92422153 + B1_Mus2 SINE Alu 26 144 -3 3 1067 554 242 46 15 chr4 63208742 63208872 -92421248 + B1_Mur2 SINE Alu 3 136 -13 3 1067 234 0 0 0 chr4 63208872 63208898 -92421222 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1067 180 0 0 0 chr4 63209823 63209843 -92420277 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1067 517 189 63 0 chr4 63210351 63210446 -92419674 - B3 SINE B2 -86 130 30 3 1067 203 200 0 22 chr4 63211376 63211422 -92418698 - L3 LINE CR1 -893 3596 3552 3 1067 978 133 56 28 chr4 63211963 63212141 -92417979 + URR1A DNA MER1_type 44 226 0 3 1067 198 103 0 0 chr4 63212465 63212494 -92417626 + (TCTCCC)n Simple_repeat Simple_repeat 4 32 0 3 1067 487 229 67 0 chr4 63213065 63213170 -92416950 - PB1D9 SINE Alu 0 120 9 3 1067 523 263 60 0 chr4 63213867 63214000 -92416120 - MER20 DNA MER1_type -78 141 1 3 1067 210 254 111 0 chr4 63214024 63214087 -92416033 + MIR SINE MIR 183 252 -10 3 1067 1618 25 5 5 chr4 63214434 63214633 -92415487 - L1Md_F2 LINE L1 -9 6573 6375 3 1067 419 189 0 39 chr4 63214670 63214747 -92415373 - B3 SINE B2 -142 74 1 3 1067 252 0 0 0 chr4 63215198 63215226 -92414894 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1067 252 0 0 0 chr4 63215610 63215638 -92414482 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1067 1879 107 63 7 chr4 63216108 63216409 -92413711 - ORR1A3 LTR MaLR -8 318 1 3 1067 1481 147 142 58 chr4 63216409 63216523 -92413597 - ORR1B1 LTR MaLR -68 326 227 3 1067 264 30 0 0 chr4 63216523 63216556 -92413564 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1067 1031 61 38 8 chr4 63216556 63216689 -92413431 - B1_Mm SINE Alu -9 138 2 3 1067 1481 147 142 58 chr4 63216689 63216873 -92413247 - ORR1B1 LTR MaLR -168 226 2 3 1067 258 258 87 13 chr4 63217333 63217426 -92412694 - MIR SINE MIR -106 162 60 3 1067 333 0 0 0 chr4 63217574 63217611 -92412509 + (CTG)n Simple_repeat Simple_repeat 3 39 0 3 1067 206 229 42 0 chr4 63218672 63218720 -92411400 + L2b LINE L2 3303 3352 -23 3 1067 32 43 0 0 chr4 63219665 63219711 -92410409 + GC_rich Low_complexity Low_complexity 1 46 0 3 1067 209 286 27 13 chr4 63220053 63220132 -92409988 + MIR3 SINE MIR 83 156 -52 3 1067 232 271 0 14 chr4 63220974 63221045 -92409075 - MIR SINE MIR -133 129 60 3 1067 247 330 16 50 chr4 63221771 63221892 -92408228 - B4A SINE B4 -173 119 3 3 1067 318 361 7 26 chr4 63222512 63222663 -92407457 - B1F SINE Alu -1 148 1 3 1067 612 114 120 26 chr4 63222670 63222787 -92407333 - B1_Mur1 SINE Alu 0 149 22 3 1067 729 0 0 0 chr4 63224049 63224130 -92405990 + (TCTCC)n Simple_repeat Simple_repeat 5 85 0 3 1067 252 281 45 90 chr4 63225918 63226051 -92404069 - MLT1D LTR MaLR -71 434 308 3 1067 249 379 24 24 chr4 63226328 63226455 -92403665 - L3 LINE CR1 -29 4460 4334 3 1067 186 231 18 55 chr4 63226858 63226913 -92403207 + L2 LINE L2 418 470 -2949 3 1067 241 329 96 45 chr4 63227134 63227290 -92402830 - L2c LINE L2 -188 3199 3036 3 1067 213 394 91 0 chr4 63227358 63227490 -92402630 + MIR SINE MIR 43 186 -76 3 1067 374 298 15 30 chr4 63227824 63227959 -92402161 - B4A SINE B4 -2 290 158 3 1067 248 320 39 0 chr4 63227983 63228061 -92402059 - B4A SINE B4 -211 81 1 3 1067 405 0 0 0 chr4 63228189 63228234 -92401886 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1067 279 337 0 34 chr4 63228234 63228323 -92401797 - RSINE1 SINE B4 -24 141 56 3 1067 183 156 0 0 chr4 63228372 63228404 -92401716 + CT-rich Low_complexity Low_complexity 2 33 0 3 1067 918 38 0 0 chr4 63228695 63228800 -92401320 - U6 snRNA snRNA 0 107 3 3 1067 205 350 39 54 chr4 63229103 63229233 -92400887 - MIRb SINE MIR -116 152 25 3 1067 409 299 20 3 chr4 63230133 63230285 -92399835 - MIRb SINE MIR -19 189 31 4 1067 384 22 0 0 chr4 63231288 63231333 -92398787 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1067 234 253 102 6 chr4 63231856 63231976 -92398144 - MIRb SINE MIR -108 168 33 4 1067 433 326 79 30 chr4 63233204 63233406 -92396714 + MIRb SINE MIR 57 268 0 4 1067 430 184 77 58 chr4 63233529 63233633 -92396487 - PB1D9 SINE Alu -1 119 14 4 1067 2449 62 12 33 chr4 63234999 63235332 -92394788 - IAPLTR2b LTR ERVK -1 326 1 4 1067 13933 49 7 3 chr4 63235334 63237092 -92393028 - IAPEz-int LTR ERVK -2 6479 4714 4 1067 1802 86 4 0 chr4 63237125 63237370 -92392750 - IAPEz-int LTR ERVK -5183 2497 2252 4 1067 912 67 0 0 chr4 63237371 63237490 -92392630 - IAPEz-int LTR ERVK -5004 1477 1359 4 1067 4247 68 19 28 chr4 63237490 63238251 -92391869 - IAPEz-int LTR ERVK -5819 662 9 4 1067 2439 65 12 33 chr4 63238252 63238586 -92391534 - IAPLTR2b LTR ERVK 0 327 1 4 1067 180 341 75 80 chr4 63239410 63239598 -92390522 - MIRb SINE MIR -35 233 47 4 1067 200 237 130 70 chr4 63239660 63239760 -92390360 - L2b LINE L2 -7 3368 3263 4 1067 24 0 0 0 chr4 63240156 63240180 -92389940 + AT_rich Low_complexity Low_complexity 1 24 0 4 1067 416 228 9 0 chr4 63241649 63241763 -92388357 + CT-rich Low_complexity Low_complexity 3 117 0 4 1067 448 272 5 1 chr4 63242079 63242186 -92387934 + PB1D10 SINE Alu 10 116 -1 4 1067 338 75 0 36 chr4 63242270 63242325 -92387795 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 4 1067 252 0 0 0 chr4 63243278 63243306 -92386814 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1067 1223 42 0 7 chr4 63243310 63243454 -92386666 - B1_Mus1 SINE Alu -5 143 1 4 1067 646 242 8 0 chr4 63243479 63243611 -92386509 - B1F SINE Alu -3 146 14 4 1067 259 217 119 138 chr4 63243484 63243644 -92386476 - B4A SINE B4 -73 219 63 4 1067 192 40 0 0 chr4 63244176 63244201 -92385919 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1067 228 338 0 0 chr4 63244491 63244565 -92385555 - ID4 SINE ID -8 75 2 4 1067 215 262 152 15 chr4 63246850 63246916 -92383204 + MIRc SINE MIR 118 192 -76 4 1067 21 0 0 0 chr4 63246937 63246958 -92383162 + AT_rich Low_complexity Low_complexity 1 21 0 4 1067 219 143 57 0 chr4 63246971 63247006 -92383114 - B4 SINE B4 -212 80 44 4 1067 192 192 18 71 chr4 63247434 63247490 -92382630 + MIR SINE MIR 79 131 -131 4 1067 201 147 29 0 chr4 63247849 63247883 -92382237 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1067 517 251 144 43 chr4 63247906 63248093 -92382027 - ID_B1 SINE B4 -17 207 2 4 1067 335 307 197 0 chr4 63248138 63248265 -92381855 - B4A SINE B4 0 292 141 4 1067 668 186 0 60 chr4 63248298 63248447 -92381673 + B3 SINE B2 77 216 0 4 1067 504 290 6 72 chr4 63248718 63248885 -92381235 + B3A SINE B2 43 198 0 4 1067 3400 28 10 0 chr4 63248933 63249321 -92380799 + MTA_Mm LTR MaLR 1 392 -4 4 1067 3838 85 12 0 chr4 63249321 63249827 -92380293 + L1_Mus1 LINE L1 6056 6567 0 4 1067 383 252 82 157 chr4 63249874 63250250 -92379870 + L1MB5 LINE L1 5675 6022 -152 4 1067 635 141 67 1 chr4 63250361 63250468 -92379652 - B1_Mur1 SINE Alu -28 121 1 4 1067 394 255 90 9 chr4 63250378 63250489 -92379631 - B4 SINE B4 -105 187 68 4 1067 382 286 19 9 chr4 63250490 63250596 -92379524 - L1MC LINE L1 -548 5785 5679 4 1067 1263 122 0 4 chr4 63250647 63250909 -92379211 + (TCTA)n Simple_repeat Simple_repeat 1 261 0 4 1067 967 150 14 0 chr4 63250909 63251056 -92379064 - B1_Mur4 SINE Alu -1 149 1 4 1067 817 282 47 19 chr4 63251056 63251471 -92378649 - L1MC LINE L1 -702 5631 5205 4 1067 493 278 93 49 chr4 63251486 63251732 -92378388 - L1MC LINE L1 -1850 4296 4040 4 1067 530 305 40 0 chr4 63251916 63252093 -92378027 - L1M4 LINE L1 -1308 4838 4655 4 1067 2088 147 93 42 chr4 63252106 63252555 -92377565 - Lx3C LINE L1 -3 6973 6502 4 1067 904 303 57 51 chr4 63252717 63253089 -92377031 - MTEa LTR MaLR -4 375 2 4 1067 411 304 0 0 chr4 63253089 63253191 -92376929 - PB1D10 SINE Alu -15 102 1 4 1067 286 107 36 0 chr4 63253786 63253842 -92376278 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1067 1819 161 178 56 chr4 63253878 63254385 -92375735 - MT2B LTR ERVL -47 554 2 4 1067 447 19 0 0 chr4 63254466 63254518 -92375602 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1067 330 305 67 0 chr4 63255202 63255307 -92374813 - PB1D10 SINE Alu -5 112 1 4 1067 330 296 63 99 chr4 63255923 63256114 -92374006 - LTR41 LTR ERVL -566 202 19 4 1067 464 345 62 9 chr4 63256145 63256370 -92373750 + MIR SINE MIR 2 238 -24 4 1067 765 236 140 23 chr4 63256441 63256662 -92373458 + MTEb LTR MaLR 1 247 -132 4 1067 562 235 103 44 chr4 63256899 63257170 -92372950 + MLT1A0 LTR MaLR 28 353 -12 4 1067 307 304 22 74 chr4 63257397 63257532 -92372588 + L2c LINE L2 3083 3210 -177 4 1067 825 234 13 0 chr4 63258353 63258510 -92371610 + ID_B1 SINE B4 2 160 -64 4 1067 2266 163 57 13 chr4 63258510 63258896 -92371224 + MTD LTR MaLR 3 405 -14 4 1067 400 169 0 0 chr4 63258915 63258980 -92371140 + ID_B1 SINE B4 159 223 -1 4 1067 3871 138 6 47 chr4 63259851 63260537 -92369583 + RMER6A LTR ERVK 99 756 0 4 1067 1040 316 120 57 chr4 63260961 63261561 -92368559 - RMER13A LTR ERVK -128 732 95 4 1067 181 322 51 25 chr4 63262426 63262544 -92367576 + MIR3 SINE MIR 54 174 -34 4 1067 308 236 6 0 chr4 63262888 63263045 -92367075 + GA-rich Low_complexity Low_complexity 2 159 0 4 1067 799 144 0 72 chr4 63263046 63263240 -92366880 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1067 678 157 0 0 chr4 63263256 63263496 -92366624 + GA-rich Low_complexity Low_complexity 1 240 0 4 1067 1332 266 93 26 chr4 63264051 63264429 -92365691 + MTD LTR MaLR 3 405 -14 4 1067 270 0 0 0 chr4 63264633 63264663 -92365457 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 4 1067 216 384 14 0 chr4 63264972 63265045 -92365075 - L2b LINE L2 -13 3362 3289 4 1067 206 224 169 29 chr4 63265339 63265447 -92364673 - MIRb SINE MIR -92 184 66 4 1067 243 307 137 26 chr4 63265638 63265755 -92364365 + MIRb SINE MIR 115 244 -24 4 1067 184 296 0 0 chr4 63266659 63266713 -92363407 - MIR SINE MIR -100 162 109 4 1067 631 268 29 0 chr4 63267117 63267255 -92362865 + RSINE1 SINE B4 4 145 -20 4 1067 244 253 198 10 chr4 63267752 63267944 -92362176 + L1MC4 LINE L1 7700 7927 -115 4 1067 832 168 191 48 chr4 63269786 63269974 -92360146 - B3 SINE B2 0 216 2 4 1067 255 248 116 124 chr4 63271135 63271264 -92358856 - MIR SINE MIR -79 183 56 4 1067 3775 9 119 14 chr4 63271318 63271764 -92358356 + MT2_Mm LTR ERVL 1 493 0 4 1067 399 311 6 69 chr4 63271786 63271885 -92358235 - MER5A1 DNA MER1_type -3 163 70 4 1067 593 242 33 115 chr4 63271885 63272128 -92357992 - ID_B1 SINE B4 0 224 2 4 1067 399 311 6 69 chr4 63272128 63272201 -92357919 - MER5A1 DNA MER1_type -97 69 2 4 1067 2244 182 85 8 chr4 63272279 63272798 -92357322 + Lx9 LINE L1 7080 7638 -6 4 1067 1062 292 31 18 chr4 63273140 63273426 -92356694 - B4A SINE B4 0 292 3 4 1067 1011 289 117 45 chr4 63273782 63274438 -92355682 + RMER13A LTR ERVK 55 738 -170 4 1067 286 341 97 21 chr4 63274823 63275009 -92355111 + L2a LINE L2 2656 2855 -564 4 1067 248 270 63 63 chr4 63275131 63275226 -92354894 + MURVY-LTR LTR ERV1 203 297 -222 4 1067 387 277 100 10 chr4 63275688 63275956 -92354164 + L1MEg LINE L1 1446 1794 -4621 4 1067 213 366 115 6 chr4 63276226 63276391 -92353729 + L2a LINE L2 2972 3154 -272 4 1067 252 312 126 13 chr4 63276424 63276583 -92353537 + L2a LINE L2 3249 3425 -1 4 1067 207 0 0 0 chr4 63276631 63276654 -92353466 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1067 286 269 39 0 chr4 63277299 63277377 -92352743 - L2a LINE L2 -8 3418 3338 4 1067 871 0 27 9 chr4 63278025 63278135 -92351985 + (GAGAA)n Simple_repeat Simple_repeat 5 116 0 4 1067 811 186 7 7 chr4 63278997 63279143 -92350977 - B1_Mur1 SINE Alu -2 147 2 4 1067 22 56 0 0 chr4 63279619 63279655 -92350465 + AT_rich Low_complexity Low_complexity 1 36 0 4 1067 2730 72 0 0 chr4 63279855 63280204 -92349916 + L1_Mus1 LINE L1 6219 6567 0 4 1067 1894 134 23 94 chr4 63280263 63280657 -92349463 + ORR1C1 LTR MaLR 13 378 0 4 1067 345 62 0 0 chr4 63281212 63281260 -92348860 + (TCC)n Simple_repeat Simple_repeat 3 50 0 4 1067 793 144 0 14 chr4 63281310 63281458 -92348662 + CT-rich Low_complexity Low_complexity 2 147 0 4 1067 248 114 0 0 chr4 63281458 63281493 -92348627 + (TCC)n Simple_repeat Simple_repeat 2 36 0 4 1067 567 141 135 92 chr4 63281523 63281664 -92348456 - B1_Mus2 SINE Alu 0 147 1 4 1067 1007 237 19 0 chr4 63282591 63282806 -92347314 - ID_B1 SINE B4 -5 219 1 4 1067 630 0 0 0 chr4 63282895 63282965 -92347155 + (CAAAG)n Simple_repeat Simple_repeat 1 70 0 4 1067 237 280 55 18 chr4 63283758 63283867 -92346253 + MIRb SINE MIR 118 230 -38 4 1067 373 345 39 17 chr4 63283926 63284106 -92346014 + Kanga2_a DNA Tc2 33 216 -672 4 1067 251 302 0 34 chr4 63284308 63284397 -92345723 + MER5B DNA MER1_type 81 166 -12 4 1067 434 232 0 0 chr4 63284407 63284489 -92345631 + B4 SINE B4 1 82 -210 4 1067 515 265 30 24 chr4 63284497 63284663 -92345457 - Lx9 LINE L1 -153 7491 7325 4 1067 466 228 140 0 chr4 63284728 63284842 -92345278 + B4 SINE B4 88 217 -75 4 1067 508 206 65 0 chr4 63284852 63284959 -92345161 + PB1D9 SINE Alu 1 114 -6 4 1067 182 333 25 13 chr4 63285132 63285211 -92344909 - MER5B DNA MER1_type -3 175 96 4 1067 369 0 0 0 chr4 63285211 63285252 -92344868 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1067 1996 290 86 34 chr4 63285354 63286118 -92344002 - Lx8 LINE L1 0 7473 6670 4 1067 190 244 0 0 chr4 63286920 63286965 -92343155 + MIRc SINE MIR 110 154 -114 4 1067 635 262 11 17 chr4 63287098 63287273 -92342847 - MTEa LTR MaLR -5 374 201 4 1067 471 82 0 0 chr4 63287275 63287348 -92342772 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1067 893 264 25 0 chr4 63287348 63287549 -92342571 - MTEa LTR MaLR -170 209 4 4 1067 446 268 0 0 chr4 63287786 63287883 -92342237 + RSINE1 SINE B4 38 134 -31 5 1067 360 64 0 0 chr4 63288092 63288139 -92341981 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1067 298 332 98 64 chr4 63288228 63288556 -92341564 - L1MD2 LINE L1 -344 6015 5677 5 1067 1663 139 31 3 chr4 63288535 63288823 -92341297 - RMER1A Other Other -1 1029 734 5 1067 5517 95 45 1 chr4 63288834 63289625 -92340495 - Lx LINE L1 -2 6652 5827 5 1067 6276 78 76 1 chr4 63289643 63290507 -92339613 - Lx3_Mus LINE L1 0 7009 6081 5 1067 1958 50 4 0 chr4 63290507 63290748 -92339372 - Lx LINE L1 -815 5839 5598 5 1067 1986 123 3 52 chr4 63290746 63291073 -92339047 + Lx LINE L1 5269 5579 -304 5 1067 2746 191 22 35 chr4 63291071 63291774 -92338346 - RMER1A Other Other -282 748 190 5 1067 324 70 0 0 chr4 63291774 63291817 -92338303 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1067 1548 272 52 49 chr4 63291817 63292318 -92337802 - RMER1A Other Other -555 511 1 5 1067 180 0 0 0 chr4 63292416 63292436 -92337684 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 5 1067 486 0 0 0 chr4 63292495 63292549 -92337571 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1067 351 0 0 0 chr4 63292549 63292587 -92337533 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1067 500 226 9 0 chr4 63292716 63292822 -92337298 - U6 snRNA snRNA 0 107 1 5 1067 236 237 0 26 chr4 63292993 63293071 -92337049 - L1MB7 LINE L1 0 6184 6109 5 1067 249 271 155 10 chr4 63293072 63293169 -92336951 + PB1D10 SINE Alu 7 117 0 5 1067 266 172 0 21 chr4 63293170 63293265 -92336855 + A-rich Low_complexity Low_complexity 1 93 0 5 1067 309 264 200 7 chr4 63293340 63293485 -92336635 - L1MB7 LINE L1 -170 6008 5836 5 1067 513 285 113 37 chr4 63293485 63293837 -92336283 - MTE2a LTR MaLR 0 379 1 5 1067 1005 276 46 32 chr4 63293840 63294188 -92335932 - L1MB7 LINE L1 -347 5837 5485 5 1067 1413 258 214 16 chr4 63294212 63294818 -92335302 - Lx8 LINE L1 -658 6815 6090 5 1067 625 229 28 90 chr4 63294858 63294969 -92335151 + MER2 DNA MER2_type 148 253 -92 5 1067 2165 159 20 54 chr4 63294969 63295360 -92334760 + ORR1C1 LTR MaLR 1 378 0 5 1067 625 229 28 90 chr4 63295360 63295459 -92334661 + MER2 DNA MER2_type 254 345 0 5 1067 264 292 86 14 chr4 63295641 63295780 -92334340 + MER113 DNA MER1_type 199 347 -174 5 1067 839 274 9 9 chr4 63296166 63296376 -92333744 - B3 SINE B2 -6 210 1 5 1067 297 0 0 0 chr4 63296384 63296417 -92333703 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1067 359 321 77 52 chr4 63296571 63296765 -92333355 - MLT2B1 LTR ERVL -171 349 151 5 1067 251 273 51 13 chr4 63296781 63296859 -92333261 - MLT2B1 LTR ERVL -468 88 8 5 1067 1198 123 106 14 chr4 63298156 63298363 -92331757 - URR1A DNA MER1_type 0 226 1 5 1067 277 252 96 10 chr4 63298483 63298587 -92331533 + MIR SINE MIR 32 144 -118 5 1067 302 335 132 70 chr4 63299605 63299862 -92330258 + MLT1J LTR MaLR 2 274 -238 5 1067 2660 183 12 10 chr4 63300130 63300644 -92329476 + RMER20A LTR ERVK 2 516 0 5 1067 218 240 20 0 chr4 63302790 63302840 -92327280 + (TATG)n Simple_repeat Simple_repeat 4 54 0 5 1067 321 236 127 24 chr4 63302906 63303119 -92327001 - Lx7 LINE L1 0 7696 7462 5 1067 228 135 0 0 chr4 63303120 63303157 -92326963 - L1_Mur3 LINE L1 -1981 3899 3863 5 1067 701 291 83 23 chr4 63303157 63303375 -92326745 - B4A SINE B4 -55 237 7 5 1067 494 261 0 11 chr4 63304703 63304885 -92325235 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 5 1067 214 223 37 37 chr4 63304901 63305064 -92325056 + (CATATA)n Simple_repeat Simple_repeat 5 167 0 5 1067 351 234 0 0 chr4 63305247 63305311 -92324809 + B4A SINE B4 145 208 -84 5 1067 450 0 0 0 chr4 63305329 63305379 -92324741 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1067 369 0 0 0 chr4 63305705 63305746 -92324374 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1067 450 0 0 0 chr4 63306178 63306228 -92323892 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1067 210 37 0 0 chr4 63306228 63306254 -92323866 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1067 434 227 137 33 chr4 63306565 63306747 -92323373 - MER3 DNA MER1_type -4 205 5 5 133 38815 45 0 3 chr4 63306950 63313543 -92316577 - L1Md_T LINE L1 0 6585 1 5 1068 225 321 12 24 chr4 63313572 63313655 -92316465 - MLT1J LTR MaLR -345 167 86 5 1068 198 0 0 0 chr4 63313833 63313855 -92316265 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 1068 1459 198 47 4 chr4 63315365 63315668 -92314452 - RMER1B Other Other -438 628 227 5 1068 632 248 66 20 chr4 63315706 63316054 -92314066 - Lx7 LINE L1 -16 7680 7245 5 1068 1674 135 112 3 chr4 63316054 63316358 -92313762 - ORR1B2 LTR MaLR -30 337 1 5 1068 4925 208 34 17 chr4 63316358 63317345 -92312775 - Lx7 LINE L1 -449 7247 6244 5 1068 1003 275 122 14 chr4 63317664 63318015 -92312105 + MTD LTR MaLR 18 406 -13 5 1068 374 301 0 28 chr4 63318139 63318245 -92311875 - RSINE1 SINE B4 -61 104 2 5 1068 233 338 32 32 chr4 63318387 63318543 -92311577 - MIRb SINE MIR -78 190 35 5 1068 248 52 86 0 chr4 63318557 63318615 -92311505 + (TTTTTG)n Simple_repeat Simple_repeat 6 68 0 5 1068 1779 168 31 62 chr4 63318669 63319056 -92311064 + ORR1C1 LTR MaLR 1 375 -3 5 1068 792 88 0 0 chr4 63320550 63320664 -92309456 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 5 1068 831 165 11 6 chr4 63320668 63320845 -92309275 + CT-rich Low_complexity Low_complexity 1 178 0 5 1068 309 277 53 0 chr4 63322239 63322333 -92307787 + MLT1B LTR MaLR 2 100 -290 5 1068 459 0 0 0 chr4 63322402 63322453 -92307667 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1068 249 266 51 0 chr4 63322453 63322532 -92307588 + MLT1B LTR MaLR 301 383 -7 5 1068 340 286 30 25 chr4 63322790 63323017 -92307103 + L1M5 LINE L1 4453 4684 -1462 5 1068 515 246 31 39 chr4 63323033 63323160 -92306960 - B1_Mur1 SINE Alu -9 140 15 5 1068 284 358 73 9 chr4 63323067 63323177 -92306943 - B4 SINE B4 -94 198 82 5 1068 313 255 96 78 chr4 63324525 63324640 -92305480 + ID_B1 SINE B4 5 121 -103 5 1068 329 309 0 0 chr4 63325948 63326029 -92304091 + ID_B1 SINE B4 101 181 -43 5 1068 2319 40 0 4 chr4 63326132 63326410 -92303710 + L1Md_A LINE L1 6306 6582 0 5 1068 267 152 0 0 chr4 63327288 63327334 -92302786 + CT-rich Low_complexity Low_complexity 3 48 0 5 1068 1007 289 87 3 chr4 63327423 63327756 -92302364 - MLT1B LTR MaLR -5 385 25 5 1068 188 255 0 60 chr4 63328944 63328994 -92301126 - MIRc SINE MIR -113 155 109 5 1068 243 0 0 0 chr4 63329081 63329108 -92301012 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1068 302 225 157 0 chr4 63329193 63329282 -92300838 + MLT1B LTR MaLR 4 106 -284 5 1068 901 311 22 11 chr4 63330338 63330402 -92299718 - B4 SINE B4 -12 280 218 5 1068 1368 67 0 0 chr4 63330402 63330582 -92299538 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1068 901 311 22 11 chr4 63330582 63330790 -92299330 - B4 SINE B4 -75 217 5 5 1068 375 141 0 0 chr4 63330939 63331003 -92299117 + (TTA)n Simple_repeat Simple_repeat 2 65 0 5 1068 186 262 0 0 chr4 63331151 63331193 -92298927 - MIRb SINE MIR -11 257 216 5 1068 347 261 33 0 chr4 63331237 63331329 -92298791 + MLT1B LTR MaLR 29 123 -267 5 1068 482 292 0 22 chr4 63332132 63332363 -92297757 + (TG)n Simple_repeat Simple_repeat 1 225 0 5 1068 300 317 0 0 chr4 63332775 63332895 -92297225 + (TG)n Simple_repeat Simple_repeat 2 121 0 5 1068 278 261 59 118 chr4 63333179 63333366 -92296754 + MTEa LTR MaLR 204 379 0 5 1068 1350 304 50 24 chr4 63333553 63334127 -92295993 + L1MB5 LINE L1 5545 6133 -41 5 1068 388 338 25 19 chr4 63334130 63334290 -92295830 + RSINE1 SINE B4 3 163 -2 5 1068 564 56 0 0 chr4 63334298 63334370 -92295750 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1068 271 121 35 0 chr4 63334459 63334517 -92295603 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1068 332 312 21 0 chr4 63335697 63335793 -92294327 + B4A SINE B4 7 104 -188 5 1068 801 0 0 0 chr4 63337299 63337388 -92292732 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 5 1068 3496 125 17 2 chr4 63337414 63337934 -92292186 - Lx4A LINE L1 -1 7057 6530 5 1068 606 93 0 0 chr4 63338721 63338807 -92291313 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 5 1068 186 275 117 48 chr4 63338808 63338953 -92291167 - L2a LINE L2 -2 3424 3270 5 1068 263 339 47 69 chr4 63338980 63339271 -92290849 + ORR1E LTR MaLR 25 318 -52 5 1068 234 239 44 44 chr4 63339271 63339385 -92290735 - Lx6 LINE L1 -11 7449 7336 5 1068 1401 287 8 159 chr4 63339439 63339955 -92290165 + MTE-int LTR MaLR 6 424 -1156 5 1068 1290 232 127 6 chr4 63339955 63340293 -92289827 + MTE2a LTR MaLR 1 379 0 5 1068 1401 287 8 159 chr4 63340293 63340500 -92289620 + MTE-int LTR MaLR 425 620 -960 5 1068 261 0 0 0 chr4 63340579 63340608 -92289512 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1068 3140 198 11 44 chr4 63340634 63341269 -92288851 + Lx2B LINE L1 6385 6998 -2 5 1068 914 302 116 48 chr4 63341285 63341805 -92288315 + MTE-int LTR MaLR 721 1325 -255 5 1068 1315 224 75 47 chr4 63341805 63342165 -92287955 - ORR1D2 LTR MaLR 0 370 1 5 1068 731 296 41 35 chr4 63342165 63342388 -92287732 + MTE-int LTR MaLR 1326 1553 -27 5 1068 1481 132 84 0 chr4 63342439 63342689 -92287431 + RLTR33 LTR ERVK 408 678 0 5 1068 426 308 34 44 chr4 63342689 63342891 -92287229 + MER2 DNA MER2_type 146 345 0 5 1068 315 289 137 54 chr4 63343188 63343429 -92286691 + MLT1B LTR MaLR 35 295 -95 5 1068 396 176 29 0 chr4 63343862 63343964 -92286156 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 1068 534 268 27 40 chr4 63344078 63344226 -92285894 + B1F2 SINE Alu 4 149 0 5 1068 446 320 31 57 chr4 63345114 63345306 -92284814 - B4 SINE B4 0 292 106 5 1068 180 0 0 0 chr4 63345880 63345900 -92284220 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1068 436 134 10 10 chr4 63345939 63346037 -92284083 + Lx9 LINE L1 7547 7644 0 5 1068 308 278 10 20 chr4 63346086 63346185 -92283935 + MIR SINE MIR 83 180 -82 5 1068 516 274 81 92 chr4 63347612 63348034 -92282086 + RMER10A LTR ERVL 1 417 -25 5 1068 395 317 41 14 chr4 63348320 63348467 -92281653 - MLT1N2 LTR MaLR -20 542 392 5 1068 210 276 39 13 chr4 63348851 63348928 -92281192 - ID4 SINE ID -3 80 2 5 1068 4407 262 40 21 chr4 63349483 63350646 -92279474 - Lx8 LINE L1 -2 7471 6287 5 1068 412 301 164 25 chr4 63351300 63351803 -92278317 - Charlie2b DNA MER1_type -30 2752 2195 5 1068 243 303 0 0 chr4 63352170 63352246 -92277874 - PB1D10 SINE Alu -39 78 3 6 1068 1161 274 77 36 chr4 63352247 63352716 -92277404 - L1MC3 LINE L1 -584 7201 6714 6 1068 31 58 0 0 chr4 63352784 63352836 -92277284 + AT_rich Low_complexity Low_complexity 1 52 0 6 1068 409 325 79 32 chr4 63352910 63353006 -92277114 - Lx9 LINE L1 -75 7398 7287 6 1068 831 21 0 0 chr4 63353006 63353103 -92277017 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 1068 515 325 79 32 chr4 63353103 63353283 -92276837 - Lx9 LINE L1 -228 7416 7109 6 1068 209 111 28 0 chr4 63353287 63353323 -92276797 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 1068 414 0 0 0 chr4 63353604 63353650 -92276470 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1068 2594 156 31 15 chr4 63353665 63354120 -92276000 + RMER4A LTR ERVK 1 462 -4 6 1068 1806 177 21 8 chr4 63354130 63354499 -92275621 - ORR1D1 LTR MaLR -29 345 1 6 1068 21 0 0 0 chr4 63354511 63354532 -92275588 + AT_rich Low_complexity Low_complexity 1 21 0 6 1068 274 304 54 16 chr4 63354631 63354815 -92275305 - L1MEg LINE L1 -5251 833 643 6 1068 922 58 28 34 chr4 63355502 63355681 -92274439 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1068 410 327 124 9 chr4 63356260 63356485 -92273635 - MLT1J1 LTR MaLR 0 444 194 6 1068 252 260 0 0 chr4 63356487 63356660 -92273460 + GA-rich Low_complexity Low_complexity 2 174 0 6 1068 204 40 0 0 chr4 63356661 63356686 -92273434 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 1068 238 343 20 0 chr4 63356716 63356818 -92273302 - MLT1J1 LTR MaLR -313 131 28 6 1068 339 269 159 66 chr4 63357013 63357164 -92272956 - RSINE1 SINE B4 0 165 1 6 1068 826 232 60 5 chr4 63357799 63357998 -92272122 + B3 SINE B2 7 216 0 6 1068 409 225 12 0 chr4 63358029 63358109 -92272011 + B4A SINE B4 1 81 -211 6 1068 266 268 10 10 chr4 63358461 63358559 -92271561 + CT-rich Low_complexity Low_complexity 2 99 0 6 1068 705 272 8 94 chr4 63358714 63358949 -92271171 + B4 SINE B4 74 288 -4 6 1068 414 0 0 0 chr4 63358993 63359039 -92271081 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1068 1458 201 109 3 chr4 63359218 63359577 -92270543 - Lx9 LINE L1 -8 7636 7240 6 1068 1216 49 0 0 chr4 63359782 63359925 -92270195 + B1_Mus1 SINE Alu 1 143 -5 6 1068 198 0 0 0 chr4 63359929 63359951 -92270169 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1068 329 256 50 106 chr4 63360947 63361126 -92268994 + Lx8 LINE L1 7305 7473 0 6 1068 257 294 28 78 chr4 63363405 63363577 -92266543 - L2c LINE L2 -240 3147 2977 6 1068 550 257 58 19 chr4 63363981 63364187 -92265933 + B3 SINE B2 3 216 0 6 1068 414 0 0 0 chr4 63364317 63364363 -92265757 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1068 687 274 109 16 chr4 63364383 63364639 -92265481 - B4A SINE B4 -8 284 5 6 1068 207 100 0 0 chr4 63364776 63364806 -92265314 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 6 1068 516 325 119 38 chr4 63364909 63365255 -92264865 + MLT1H1 LTR MaLR 1 414 -165 6 1068 270 220 0 102 chr4 63367026 63367223 -92262897 + C-rich Low_complexity Low_complexity 4 180 0 6 1068 256 273 15 0 chr4 63367408 63367474 -92262646 - tRNA-Ala-GCY_ tRNA tRNA -6 69 3 6 1068 198 0 0 0 chr4 63367790 63367812 -92262308 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1068 251 190 0 17 chr4 63367849 63367908 -92262212 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 6 1068 1455 64 37 0 chr4 63368209 63368396 -92261724 - B2_Mm2 SINE B2 0 195 2 6 1068 6449 40 5 11 chr4 63368396 63369183 -92260937 + L1Md_F2 LINE L1 5801 6582 0 6 1068 746 153 30 0 chr4 63369191 63369322 -92260798 - B1_Mus1 SINE Alu -13 135 1 6 1068 305 220 24 135 chr4 63369211 63369337 -92260783 - MT2B LTR ERVL -337 264 153 6 1068 262 308 99 8 chr4 63369828 63369949 -92260171 + L2a LINE L2 3277 3408 -18 6 1068 1493 179 49 127 chr4 63370261 63370426 -92259694 + ORR1C2 LTR MaLR 8 175 -209 6 1068 1536 22 0 0 chr4 63370426 63370606 -92259514 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1068 1493 179 49 127 chr4 63370606 63370849 -92259271 + ORR1C2 LTR MaLR 176 384 0 6 1068 315 0 0 0 chr4 63372408 63372443 -92257677 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1068 417 313 60 98 chr4 63372453 63372800 -92257320 + ORR1E LTR MaLR 26 359 0 6 1068 306 73 0 0 chr4 63372943 63372984 -92257136 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1068 716 298 106 43 chr4 63373251 63373517 -92256603 - L1M5 LINE L1 -413 5751 5466 6 1068 1069 187 113 0 chr4 63373517 63373720 -92256400 - URR1A DNA MER1_type 0 226 1 6 1068 716 288 95 16 chr4 63373720 63373948 -92256172 - L1M5 LINE L1 -699 5465 5219 6 1068 327 226 0 0 chr4 63375726 63375788 -92254332 - ORR1D1 LTR MaLR -102 272 211 6 1068 570 241 15 28 chr4 63375901 63376077 -92254043 - ORR1D1 LTR MaLR -194 176 2 6 1068 933 254 22 155 chr4 63376551 63376952 -92253168 - MTE2a LTR MaLR -31 348 1 6 1068 28 0 0 0 chr4 63377620 63377648 -92252472 + AT_rich Low_complexity Low_complexity 1 28 0 6 1068 309 26 0 0 chr4 63377661 63377699 -92252421 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1068 35 24 0 0 chr4 63377772 63377814 -92252306 + AT_rich Low_complexity Low_complexity 1 42 0 6 1068 764 180 0 14 chr4 63378165 63378306 -92251814 - B3 SINE B2 0 216 78 6 1068 919 169 22 11 chr4 63379910 63380089 -92250031 + ORR1D1 LTR MaLR 1 181 -193 6 1068 501 94 0 0 chr4 63380089 63380174 -92249946 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 1068 523 251 137 49 chr4 63380174 63380379 -92249741 + ORR1D1 LTR MaLR 155 377 -7 6 1068 2222 138 56 5 chr4 63380383 63380776 -92249344 - MTC LTR MaLR -8 413 1 6 1068 226 202 215 0 chr4 63380786 63380865 -92249255 - MER5B DNA MER1_type -77 101 6 6 1068 211 300 0 14 chr4 63381122 63381193 -92248927 - MIRm SINE MIR -147 129 60 6 1068 213 186 0 0 chr4 63381818 63381861 -92248259 + MIRb SINE MIR 177 219 -49 6 1068 222 317 148 16 chr4 63381926 63382109 -92248011 + MIRb SINE MIR 55 261 -7 6 1068 27 87 0 0 chr4 63382408 63382477 -92247643 + AT_rich Low_complexity Low_complexity 1 69 0 6 1068 249 119 0 0 chr4 63382580 63382622 -92247498 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1068 183 139 0 0 chr4 63382614 63382650 -92247470 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1068 1392 240 49 9 chr4 63382711 63383056 -92247064 - Lx7 LINE L1 -416 7280 6922 6 1068 664 217 0 0 chr4 63383785 63383914 -92246206 + B1_Mus2 SINE Alu 6 134 -13 6 1068 440 252 17 9 chr4 63384037 63384153 -92245967 - PB1D10 SINE Alu 0 117 1 6 1068 228 300 0 14 chr4 63384202 63384273 -92245847 - B4A SINE B4 -2 290 221 6 1068 254 306 102 0 chr4 63384223 63384331 -92245789 + RMER12 LTR ERVK 715 833 -489 6 1068 415 349 24 62 chr4 63384314 63384520 -92245600 - B4A SINE B4 0 292 95 6 1068 1064 254 91 94 chr4 63384520 63385426 -92244694 + RMER17B LTR ERVK 1 899 -9 6 1068 647 242 0 13 chr4 63388124 63388275 -92241845 - B1F1 SINE Alu 0 149 1 6 1068 387 0 0 0 chr4 63388425 63388468 -92241652 + (TATG)n Simple_repeat Simple_repeat 2 44 0 6 1068 189 0 0 0 chr4 63389538 63389559 -92240561 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 6 1068 619 274 7 7 chr4 63389580 63389727 -92240393 - RSINE1 SINE B4 -14 151 5 6 1068 183 206 0 0 chr4 63389848 63389882 -92240238 + L2a LINE L2 3376 3409 -17 6 1068 210 37 0 0 chr4 63390049 63390076 -92240044 + (TCTTG)n Simple_repeat Simple_repeat 4 30 0 6 1068 687 25 0 0 chr4 63390076 63390157 -92239963 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 6 1068 324 0 0 0 chr4 63391160 63391196 -92238924 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1068 192 40 0 0 chr4 63391196 63391220 -92238900 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1068 659 278 62 10 chr4 63391288 63391481 -92238639 - B4A SINE B4 -73 219 17 6 1068 637 182 0 13 chr4 63392142 63392292 -92237828 + GA-rich Low_complexity Low_complexity 6 153 0 6 1068 790 123 12 78 chr4 63393151 63393318 -92236802 + URR1B DNA MER1_type 70 225 0 6 1068 185 94 31 0 chr4 63393724 63393756 -92236364 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1068 655 301 73 44 chr4 63393761 63394035 -92236085 - B4A SINE B4 -10 282 1 6 1068 256 272 111 0 chr4 63394595 63394676 -92235444 + MIRb SINE MIR 94 183 -85 6 1068 307 345 67 28 chr4 63396093 63396272 -92233848 + MIRc SINE MIR 23 208 -60 6 1068 225 65 0 0 chr4 63396523 63396554 -92233566 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1068 31 0 0 0 chr4 63396816 63396847 -92233273 + AT_rich Low_complexity Low_complexity 1 31 0 6 1068 333 298 232 8 chr4 63396847 63396972 -92233148 - RSINE1 SINE B4 -10 155 3 6 1068 897 256 20 0 chr4 63398806 63399009 -92231111 + B3 SINE B2 5 211 -5 6 1068 293 0 27 0 chr4 63399199 63399236 -92230884 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1068 23 0 0 0 chr4 63400330 63400353 -92229767 + AT_rich Low_complexity Low_complexity 1 23 0 6 1068 635 229 84 38 chr4 63402434 63402647 -92227473 + MER67C LTR ERV1 489 711 0 6 1068 270 346 14 20 chr4 63402872 63403026 -92227094 + MIR SINE MIR 4 150 -58 6 1068 1027 148 111 24 chr4 63403807 63404014 -92226106 - URR1A DNA MER1_type -1 225 1 6 1068 546 16 0 0 chr4 63404710 63404773 -92225347 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1068 249 159 0 0 chr4 63406264 63406308 -92223812 + GA-rich Low_complexity Low_complexity 2 45 0 6 1068 273 198 0 34 chr4 63407003 63407092 -92223028 + CT-rich Low_complexity Low_complexity 2 87 0 6 1068 505 216 0 10 chr4 63407092 63407195 -92222925 - B1_Mur2 SINE Alu 0 149 48 6 1068 507 338 48 0 chr4 63407327 63407472 -92222648 + RSINE1 SINE B4 4 155 -10 6 1068 411 56 0 0 chr4 63407472 63407526 -92222594 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 6 1068 869 284 99 11 chr4 63408119 63408492 -92221628 - L1MD2 LINE L1 -496 5863 5458 7 1068 666 255 99 71 chr4 63408618 63408901 -92221219 - B4 SINE B4 0 292 2 7 1068 764 186 20 33 chr4 63408913 63409063 -92221057 - B1_Mur3 SINE Alu 0 149 2 7 1068 288 241 168 9 chr4 63409064 63409177 -92220943 - L1MD2 LINE L1 -767 5475 5345 7 1068 293 266 25 25 chr4 63409341 63409422 -92220698 - Tigger7 DNA MER2_type -1 2490 2410 7 1068 348 284 15 0 chr4 63409723 63409857 -92220263 - Tigger7 DNA MER2_type -78 2413 2278 7 1068 391 380 50 15 chr4 63409852 63410114 -92220006 - Tigger7 DNA MER2_type -2134 357 87 7 1068 408 40 0 0 chr4 63410161 63410211 -92219909 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1068 542 211 19 25 chr4 63410244 63410404 -92219716 + Lx4A LINE L1 6900 7058 0 7 1068 212 163 40 20 chr4 63410408 63410431 -92219689 + polypurine Low_complexity Low_complexity 4 28 0 7 1068 1085 123 0 6 chr4 63410431 63410611 -92219509 + (GAA)n Simple_repeat Simple_repeat 1 179 0 7 1068 212 163 40 20 chr4 63410611 63410637 -92219483 + polypurine Low_complexity Low_complexity 29 54 0 7 1068 701 118 59 0 chr4 63410638 63410807 -92219313 + GA-rich Low_complexity Low_complexity 1 179 0 7 1068 557 144 41 29 chr4 63410829 63411001 -92219119 + GA-rich Low_complexity Low_complexity 1 174 0 7 1068 21 0 0 0 chr4 63412306 63412327 -92217793 + AT_rich Low_complexity Low_complexity 1 21 0 7 1068 1718 185 71 3 chr4 63412328 63412707 -92217413 - Lx9 LINE L1 -2 7642 7238 7 1068 661 216 211 34 chr4 63413328 63413571 -92216549 - B4 SINE B4 -5 287 2 7 1068 255 264 104 25 chr4 63413585 63413764 -92216356 - MIR3 SINE MIR -58 210 13 7 1068 491 329 74 11 chr4 63414628 63414867 -92215253 - MLT1A1 LTR MaLR -2 406 116 7 1068 534 54 0 0 chr4 63415482 63415556 -92214564 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 1068 645 278 30 5 chr4 63415564 63415763 -92214357 - B4A SINE B4 -85 207 4 7 1068 2136 258 29 20 chr4 63415849 63416438 -92213682 + RCHARR1 DNA MER1_type 191 784 -190 7 1068 1355 139 47 0 chr4 63416723 63416938 -92213182 + URR1B DNA MER1_type 1 225 0 7 1068 198 209 0 0 chr4 63419893 63419936 -92210184 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 7 1068 717 309 38 46 chr4 63419938 63420199 -92209921 - B4 SINE B4 -1 291 33 7 1068 453 299 29 14 chr4 63420242 63420381 -92209739 - MER20 DNA MER1_type -75 144 4 7 1068 355 269 185 0 chr4 63422032 63422140 -92207980 - MER20 DNA MER1_type -25 194 67 7 1068 232 289 108 0 chr4 63422650 63422733 -92207387 - MIR3 SINE MIR -35 173 82 7 1068 1879 203 106 47 chr4 63422922 63423297 -92206823 + Lx9 LINE L1 7075 7478 -166 7 1068 273 98 0 0 chr4 63423297 63423338 -92206782 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 7 1068 1879 203 106 47 chr4 63423338 63423500 -92206620 + Lx9 LINE L1 7479 7644 0 7 1068 35 24 0 0 chr4 63424124 63424166 -92205954 + AT_rich Low_complexity Low_complexity 1 42 0 7 1068 1117 223 10 0 chr4 63424166 63424368 -92205752 - B3 SINE B2 -12 204 1 7 1068 461 131 12 0 chr4 63424596 63424680 -92205440 + (GA)n Simple_repeat Simple_repeat 1 85 0 7 1068 216 245 0 36 chr4 63425479 63425534 -92204586 + MIRc SINE MIR 75 127 -141 7 1068 323 165 124 45 chr4 63426318 63426407 -92203713 - MTEa LTR MaLR 0 379 284 7 1068 230 263 0 0 chr4 63426472 63426529 -92203591 - MTEa LTR MaLR -213 166 110 7 1068 693 331 10 90 chr4 63426755 63427054 -92203066 + Lx8 LINE L1 6397 6671 -1025 7 1068 518 272 29 34 chr4 63427540 63427715 -92202405 - L1M2 LINE L1 -1908 4235 4062 7 1068 4225 162 91 67 chr4 63427728 63428614 -92201506 - RMER13B LTR ERVK 0 908 1 7 1068 1319 278 42 52 chr4 63428645 63429263 -92200857 + L1M2 LINE L1 4374 4985 -1158 7 1068 814 315 99 28 chr4 63429332 63429754 -92200366 + Lx8 LINE L1 6960 7411 -62 7 1068 402 21 0 0 chr4 63429922 63429969 -92200151 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1068 255 204 0 0 chr4 63429981 63430035 -92200085 + G-rich Low_complexity Low_complexity 6 59 0 7 1068 883 282 120 59 chr4 63430045 63430779 -92199341 + L1MA4A LINE L1 5088 5912 -391 7 1068 1907 46 4 4 chr4 63431086 63431325 -92198795 - L1Md_F3 LINE L1 -1 6583 6345 7 1068 781 243 267 24 chr4 63432102 63432435 -92197685 - MTC LTR MaLR 0 421 8 7 1068 824 285 152 6 chr4 63432601 63432957 -92197163 + MLT1A1 LTR MaLR 1 408 0 7 1068 328 314 56 15 chr4 63433638 63433831 -92196289 - MIRb SINE MIR -1 267 63 7 1068 632 300 74 40 chr4 63434190 63434489 -92195631 + MER63B DNA AcHobo 128 436 0 7 1068 29 0 0 0 chr4 63435215 63435244 -92194876 + AT_rich Low_complexity Low_complexity 1 29 0 7 1068 444 19 0 0 chr4 63436673 63436726 -92193394 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 7 1068 349 340 60 37 chr4 63436978 63437195 -92192925 - MLT1A LTR MaLR -77 297 76 7 1068 500 212 20 0 chr4 63437471 63437570 -92192550 - PB1D9 SINE Alu -2 118 18 7 1068 1159 62 7 7 chr4 63437590 63437737 -92192383 - B1_Mus2 SINE Alu 0 147 1 7 1068 389 349 118 24 chr4 63437762 63438135 -92191985 - MLT1A1 LTR MaLR 0 408 1 7 1068 26 0 0 0 chr4 63438719 63438745 -92191375 + AT_rich Low_complexity Low_complexity 1 26 0 7 133 410 330 26 69 chr4 63438747 63438978 -92191142 + B4A SINE B4 1 221 -71 7 1069 2073 271 139 39 chr4 63439085 63439885 -92190235 + Lx9 LINE L1 6745 7624 -20 7 1069 230 196 0 21 chr4 63439963 63440010 -92190110 + (CATA)n Simple_repeat Simple_repeat 4 49 0 7 1069 1814 156 119 0 chr4 63440030 63440358 -92189762 - ORR1B2 LTR MaLR 0 367 1 7 1069 364 287 41 136 chr4 63440404 63440698 -92189422 + B4 SINE B4 2 267 -25 7 1069 329 236 14 0 chr4 63441052 63441124 -92188996 - ID4_ SINE ID -8 75 3 7 1069 588 190 0 33 chr4 63441208 63441388 -92188732 + C-rich Low_complexity Low_complexity 4 177 0 7 1069 439 226 149 55 chr4 63441926 63442127 -92187993 + L1MA4A LINE L1 5729 5948 -355 7 1069 776 191 229 0 chr4 63442917 63443100 -92187020 + URR1B DNA MER1_type 1 225 0 7 1069 670 174 53 165 chr4 63443129 63443335 -92186785 - MTC LTR MaLR 0 421 239 7 1069 302 115 19 0 chr4 63443868 63443920 -92186200 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 7 1069 431 172 0 40 chr4 63443925 63444021 -92186099 - Lx5 LINE L1 -125 6933 6819 7 1069 711 226 80 20 chr4 63445276 63445475 -92184645 - L1MC3 LINE L1 -298 7487 7277 7 1069 432 0 0 0 chr4 63445597 63445645 -92184475 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1069 425 227 37 124 chr4 63445645 63445806 -92184314 - B3A SINE B2 -44 154 8 7 1069 296 268 0 14 chr4 63445873 63445945 -92184175 - B3A SINE B2 -65 133 63 7 1069 21 0 0 0 chr4 63445997 63446018 -92184102 + AT_rich Low_complexity Low_complexity 1 21 0 7 1069 674 97 272 0 chr4 63446026 63446140 -92183980 + B1_Mm SINE Alu 3 147 0 7 1069 296 228 0 0 chr4 63446686 63446743 -92183377 - MIRm SINE MIR 0 276 220 7 1069 243 0 0 0 chr4 63446929 63446956 -92183164 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1069 489 34 0 0 chr4 63447120 63447179 -92182941 + (TGG)n Simple_repeat Simple_repeat 2 60 0 7 1069 228 363 44 7 chr4 63447208 63447344 -92182776 + MIRb SINE MIR 107 247 -21 7 1069 275 198 12 0 chr4 63447976 63447995 -92182125 + polypyrimidine Low_complexity Low_complexity 70 88 0 7 1069 1466 90 11 0 chr4 63447995 63448183 -92181937 - B2_Mm1t SINE B2 -3 190 1 7 1069 275 198 12 0 chr4 63448183 63448249 -92181871 + CT-rich Low_complexity Low_complexity 3 69 0 7 1069 234 247 164 0 chr4 63449433 63449506 -92180614 - Tigger5 DNA MER2_type -2183 223 139 7 1069 405 273 40 26 chr4 63449522 63449679 -92180441 - MER2 DNA MER2_type -38 307 155 7 1069 284 316 0 0 chr4 63449703 63449782 -92180338 - MER2 DNA MER2_type -266 79 1 7 1069 1263 243 10 50 chr4 63450486 63450785 -92179335 + B4 SINE B4 2 288 -4 7 1069 678 109 0 0 chr4 63451263 63451364 -92178756 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 7 1069 1098 56 0 0 chr4 63451368 63451510 -92178610 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 7 1069 212 317 0 12 chr4 63453229 63453312 -92176808 - MIR SINE MIR -44 218 137 7 1069 373 290 19 0 chr4 63453317 63453424 -92176696 - PB1D10 SINE Alu -8 109 1 7 1069 226 286 141 14 chr4 63454063 63454134 -92175986 - L2b LINE L2 -32 3343 3264 7 1069 182 250 0 22 chr4 63454815 63454860 -92175260 + L2 LINE L2 2688 2731 -688 7 1069 216 86 0 0 chr4 63455715 63455750 -92174370 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1069 264 316 31 10 chr4 63455766 63455862 -92174258 + MIR SINE MIR 33 130 -78 7 1069 955 197 36 96 chr4 63456141 63456178 -92173942 + B3 SINE B2 6 35 -181 7 1069 2250 42 4 0 chr4 63456178 63456440 -92173680 + L1Md_A LINE L1 6320 6582 0 7 1069 955 197 36 96 chr4 63456440 63456621 -92173499 + B3 SINE B2 36 211 -5 7 1069 468 274 118 61 chr4 63456641 63457092 -92173028 - L1MA9 LINE L1 -4 6308 5798 7 1069 282 309 63 7 chr4 63457973 63458147 -92171973 - LTR16E1 LTR ERVL 0 538 286 7 1069 347 299 88 61 chr4 63458354 63458582 -92171538 + Lx9 LINE L1 5764 6024 -276 7 1069 370 360 12 74 chr4 63458637 63458799 -92171321 + B4A SINE B4 2 153 -139 7 1069 208 182 23 0 chr4 63458945 63458989 -92171131 + (CATA)n Simple_repeat Simple_repeat 4 48 0 7 1069 437 378 50 9 chr4 63459079 63459298 -92170822 - LTR16E1 LTR ERVL -197 341 114 7 1069 264 349 84 13 chr4 63459517 63459671 -92170449 + MIR SINE MIR 21 185 -77 7 1069 948 107 73 0 chr4 63460027 63460177 -92169943 - RMER19A LTR ERVK 0 902 742 7 1069 198 0 0 0 chr4 63460469 63460491 -92169629 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1069 2990 170 52 7 chr4 63460585 63461218 -92168902 - RMER19A LTR ERVK -31 706 4 7 1069 270 0 0 0 chr4 63461218 63461248 -92168872 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1069 225 231 0 0 chr4 63461248 63461287 -92168833 + (CG)n Simple_repeat Simple_repeat 1 39 0 7 1069 685 278 56 0 chr4 63461291 63461453 -92168667 - B3A SINE B2 -24 174 4 7 1069 2010 107 6 42 chr4 63461502 63461815 -92168305 - L1_Mus3 LINE L1 0 6638 6337 8 1069 3428 79 0 0 chr4 63461815 63462256 -92167864 + L1_Mus3 LINE L1 5886 6326 -312 8 1069 198 0 0 0 chr4 63462341 63462363 -92167757 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1069 2559 148 55 2 chr4 63462429 63462829 -92167291 + MTC LTR MaLR 1 421 0 8 1069 4829 86 17 2 chr4 63462832 63463481 -92166639 + L1Md_F2 LINE L1 5863 6524 -58 8 1069 2335 53 0 7 chr4 63463482 63463767 -92166353 - L1Md_F2 LINE L1 0 6582 6300 8 1069 422 69 0 0 chr4 63463766 63463824 -92166296 + L1Md_F2 LINE L1 6513 6570 -12 8 1069 668 38 0 0 chr4 63463831 63463911 -92166209 - L1Md_T LINE L1 -1110 4773 4694 8 1069 6542 47 6 0 chr4 63463913 63464700 -92165420 + L1Md_T LINE L1 4788 5579 -304 8 1069 8686 46 0 0 chr4 63464700 63465682 -92164438 + L1Md_T LINE L1 5601 6582 0 8 1069 1615 37 0 11 chr4 63465680 63465871 -92164249 + L1Md_F3 LINE L1 6381 6569 -15 8 1069 4966 48 0 6 chr4 63465877 63466507 -92163613 - L1_Mm LINE L1 -3457 2426 1801 8 1069 3197 40 16 3 chr4 63466507 63466878 -92163242 + L1Md_F3 LINE L1 6206 6581 -3 8 1069 7011 113 39 13 chr4 63467282 63468676 -92161444 + Lx LINE L1 5218 6643 -11 8 1069 185 0 40 0 chr4 63468676 63468701 -92161419 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1069 825 272 147 78 chr4 63472082 63472469 -92157651 - Lx8 LINE L1 -480 6993 6580 8 1069 1085 306 132 8 chr4 63472483 63472855 -92157265 + MTD LTR MaLR 1 418 -1 8 1069 229 322 66 33 chr4 63472993 63473144 -92156976 - Lx8 LINE L1 -1055 6418 6263 8 1069 1229 75 0 0 chr4 63473401 63473548 -92156572 + B1_Mus1 SINE Alu 2 148 0 8 1069 502 120 21 11 chr4 63473567 63473660 -92156460 + GA-rich Low_complexity Low_complexity 2 95 0 8 1069 2781 305 58 70 chr4 63473666 63474944 -92155176 - RMER15-int LTR ERVL -2925 2074 813 8 1069 653 333 75 18 chr4 63474967 63475134 -92154986 - RMER15-int LTR ERVL -4311 688 503 8 1069 3228 154 43 31 chr4 63475134 63475562 -92154558 + RMER4B LTR ERVK 1 431 -154 8 1069 504 0 0 0 chr4 63475562 63475618 -92154502 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1069 3228 154 43 31 chr4 63475618 63475767 -92154353 + RMER4B LTR ERVK 432 585 0 8 1069 653 333 75 18 chr4 63475767 63475932 -92154188 - RMER15-int LTR ERVL -4497 502 337 8 1069 272 319 186 0 chr4 63476056 63476169 -92153951 - RMER15-int LTR ERVL -4669 330 197 8 1069 470 329 45 82 chr4 63476253 63476498 -92153622 - RMER15 LTR ERVL -42 533 298 8 1069 289 257 48 79 chr4 63476505 63476670 -92153450 - RMER15 LTR ERVL -414 161 2 8 1069 311 250 0 0 chr4 63476671 63476731 -92153389 - MTE2b LTR MaLR -319 60 1 8 1069 720 334 16 22 chr4 63476732 63477050 -92153070 - L1M5 LINE L1 -438 5724 5409 8 1069 7644 14 0 0 chr4 63477271 63478119 -92152001 - L1Md_A LINE L1 -2 6580 5733 8 1069 349 372 39 0 chr4 63478270 63478426 -92151694 - L1M5 LINE L1 -1338 4808 4647 8 1069 812 245 95 30 chr4 63478720 63479053 -92151067 - ORR1E LTR MaLR -2 357 2 8 1069 591 15 0 0 chr4 63479157 63479225 -92150895 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1069 270 152 0 0 chr4 63479325 63479384 -92150736 + CT-rich Low_complexity Low_complexity 2 60 0 8 1069 6479 69 15 5 chr4 63479533 63480334 -92149786 - L1_Mus2 LINE L1 -1 6565 5757 8 1069 2456 174 27 7 chr4 63480896 63481307 -92148813 + MTC LTR MaLR 3 421 0 8 1069 459 0 0 0 chr4 63481435 63481486 -92148634 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1069 361 338 113 23 chr4 63481489 63481622 -92148498 - RSINE1 SINE B4 -19 146 2 8 1069 281 310 68 20 chr4 63481902 63482050 -92148070 + MIR SINE MIR 108 262 0 8 1069 390 108 0 0 chr4 63482348 63482413 -92147707 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1069 614 13 13 0 chr4 63482900 63482975 -92147145 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 8 1069 423 56 0 0 chr4 63483228 63483282 -92146838 + (A)n Simple_repeat Simple_repeat 1 54 0 8 1069 22 35 0 0 chr4 63483332 63483361 -92146759 + AT_rich Low_complexity Low_complexity 1 29 0 8 1069 312 319 0 11 chr4 63483458 63483553 -92146567 + CT-rich Low_complexity Low_complexity 1 94 0 8 1069 261 275 0 70 chr4 63484151 63484237 -92145883 - MIRm SINE MIR -1 275 196 8 1069 261 353 157 1 chr4 63485029 63485219 -92144901 + MIRb SINE MIR 29 251 -17 8 1069 208 339 92 23 chr4 63486123 63486253 -92143867 - MIRb SINE MIR -111 157 19 8 1069 394 273 144 36 chr4 63486912 63487079 -92143041 - Lx8 LINE L1 -148 7325 7141 8 1069 3022 92 18 2 chr4 63487207 63487608 -92142512 - L1_Mus4 LINE L1 -3 6633 6227 8 1069 3729 254 113 25 chr4 63488353 63489379 -92140741 - Lx8 LINE L1 -141 7332 6217 8 1069 294 286 0 13 chr4 63489542 63489620 -92140500 - MER5B DNA MER1_type -39 139 63 8 1069 326 61 20 0 chr4 63489680 63489729 -92140391 + (CCA)n Simple_repeat Simple_repeat 2 51 0 8 1069 205 405 92 6 chr4 63490541 63490705 -92139415 + MIRb SINE MIR 88 265 -3 8 1069 336 24 0 0 chr4 63491484 63491525 -92138595 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 8 1069 22 0 0 0 chr4 63492260 63492282 -92137838 + AT_rich Low_complexity Low_complexity 1 22 0 8 1069 22 56 0 0 chr4 63492339 63492375 -92137745 + AT_rich Low_complexity Low_complexity 1 36 0 8 1069 27 49 0 0 chr4 63492593 63492634 -92137486 + AT_rich Low_complexity Low_complexity 1 41 0 8 1069 246 220 0 0 chr4 63492722 63492781 -92137339 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 8 1069 1374 276 21 34 chr4 63493335 63493718 -92136402 + MTEa LTR MaLR 2 379 0 8 1069 244 356 90 28 chr4 63494774 63494955 -92135165 - MIR3 SINE MIR -21 187 1 8 1069 915 218 25 45 chr4 63496102 63496152 -92133968 - B3A SINE B2 0 198 152 8 1069 393 22 0 0 chr4 63496152 63496198 -92133922 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1069 915 218 25 45 chr4 63496198 63496349 -92133771 - B3A SINE B2 -47 151 1 8 1069 303 252 115 58 chr4 63496354 63496493 -92133627 - B1F SINE Alu -2 147 1 8 1069 245 333 0 0 chr4 63496501 63496579 -92133541 - B4 SINE B4 -214 78 1 8 1069 1047 67 0 0 chr4 63497708 63497843 -92132277 - L1_Mus2 LINE L1 -2 6564 6430 8 1069 449 17 17 0 chr4 63498288 63498346 -92131774 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1069 291 93 0 0 chr4 63498366 63498409 -92131711 + (CAA)n Simple_repeat Simple_repeat 3 45 0 8 1069 4611 96 14 2 chr4 63499299 63500000 -92130120 - L1_Mus1 LINE L1 0 6582 5839 8 1069 8352 85 3 5 chr4 63500000 63501104 -92129016 - L1_Mm LINE L1 -45 5838 4737 1 1069 3396 98 6 29 chr4 63501102 63501617 -92128503 + L1_Mm LINE L1 2086 2588 -3295 2 1069 1267 132 6 5 chr4 63502342 63502551 -92127569 + Lx4B LINE L1 6370 6572 -404 3 1069 694 212 5 78 chr4 63502571 63502776 -92127344 + Lx4B LINE L1 6865 7054 -4 4 1069 231 356 0 11 chr4 63502782 63502870 -92127250 - MIR SINE MIR -148 114 28 5 1069 223 316 0 0 chr4 63505986 63506043 -92124077 + CT-rich Low_complexity Low_complexity 3 59 0 6 1069 289 109 0 30 chr4 63506910 63506976 -92123144 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 7 1069 781 251 83 36 chr4 63507392 63507708 -92122412 + RMER20B LTR ERVK 98 413 -214 8 1069 247 259 19 0 chr4 63508795 63508849 -92121271 - B4A SINE B4 -6 286 232 9 1069 1034 58 7 0 chr4 63508854 63508992 -92121128 + (TTTC)n Simple_repeat Simple_repeat 4 142 0 1 1069 513 0 0 0 chr4 63508992 63509048 -92121072 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 1 1069 228 111 0 0 chr4 63509048 63509084 -92121036 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 1 1069 1215 54 0 0 chr4 63509111 63509258 -92120862 - B1_Mus1 SINE Alu 0 148 2 1 1069 812 268 20 0 chr4 63509266 63509464 -92120656 - B4A SINE B4 -67 225 24 9 1069 236 191 0 0 chr4 63510977 63511019 -92119101 + MER58D DNA MER1_type 325 366 -20 1 1069 283 320 65 8 chr4 63514105 63514228 -92115892 - MER5A1 DNA MER1_type -36 130 1 1 1069 513 0 0 0 chr4 63516826 63516883 -92113237 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1069 248 111 0 22 chr4 63516883 63516928 -92113192 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1069 231 114 0 0 chr4 63516954 63516989 -92113131 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1069 243 368 58 0 chr4 63516995 63517082 -92113038 - RSINE1 SINE B4 -2 163 72 1 1069 217 312 26 13 chr4 63517179 63517257 -92112863 - B4 SINE B4 -212 80 2 2 1069 420 235 12 0 chr4 63517326 63517407 -92112713 - ID4_ SINE ID 0 83 2 2 1069 383 279 95 9 chr4 63517416 63517521 -92112599 - PB1 SINE Alu -2 125 12 2 1069 36 23 0 0 chr4 63518125 63518168 -92111952 + AT_rich Low_complexity Low_complexity 1 43 0 2 1069 289 248 23 117 chr4 63519264 63519392 -92110728 + L2a LINE L2 3301 3416 -10 2 1069 882 29 0 0 chr4 63521196 63521301 -92108819 + (TC)n Simple_repeat Simple_repeat 1 105 0 2 1069 224 131 0 21 chr4 63521337 63521384 -92108736 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1069 243 0 0 0 chr4 63521757 63521784 -92108336 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1069 21 0 0 0 chr4 63524580 63524601 -92105519 + AT_rich Low_complexity Low_complexity 1 21 0 2 1069 786 301 43 5 chr4 63524804 63525011 -92105109 + B4 SINE B4 42 256 -36 2 1069 315 0 0 0 chr4 63525038 63525073 -92105047 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1069 185 359 127 53 chr4 63525907 63526057 -92104063 + MER5A DNA MER1_type 2 162 -27 3 1069 5138 43 0 0 chr4 63526424 63527030 -92103090 - L1Md_T LINE L1 0 6582 5977 3 1069 244 312 75 0 chr4 63527315 63527408 -92102712 + Cheshire DNA MER1_type 175 274 -2146 3 1069 310 326 31 0 chr4 63528174 63528272 -92101848 + PB1D9 SINE Alu 10 110 -10 3 1069 441 178 193 0 chr4 63528285 63528388 -92101732 + RMER17B LTR ERVK 303 431 -527 3 1069 252 0 0 0 chr4 63528388 63528416 -92101704 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1069 441 178 193 0 chr4 63528416 63528447 -92101673 + RMER17B LTR ERVK 432 462 -496 3 1069 846 272 5 9 chr4 63529329 63529544 -92100576 - B3 SINE B2 -1 215 2 3 1069 211 224 20 0 chr4 63529569 63529618 -92100502 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1069 410 231 0 9 chr4 63529618 63529723 -92100397 - Lx9 LINE L1 -128 7516 7413 3 1069 384 272 0 71 chr4 63530137 63530236 -92099884 - PB1D10 SINE Alu -7 110 19 4 1069 201 215 37 37 chr4 63531291 63531373 -92098747 + CT-rich Low_complexity Low_complexity 3 84 0 4 1069 200 278 0 0 chr4 63532502 63532556 -92097564 - MER5A DNA MER1_type -123 66 13 4 1069 378 338 70 62 chr4 63534972 63535231 -92094889 + RMER15 LTR ERVL 300 560 -15 4 1069 3486 20 5 2 chr4 63535319 63535714 -92094406 + MTA_Mm LTR MaLR 1 396 0 4 1069 666 285 41 23 chr4 63536261 63536480 -92093640 - Lx6 LINE L1 0 7460 7238 4 1069 343 360 29 0 chr4 63536724 63536860 -92093260 - MLT1A LTR MaLR -234 140 1 4 1069 2859 186 44 14 chr4 63536990 63537578 -92092542 + RMER13A LTR ERVK 255 860 0 4 1069 1062 251 114 20 chr4 63537926 63538268 -92091852 - MTEb LTR MaLR -4 375 2 4 1069 616 275 126 36 chr4 63538688 63538997 -92091123 + MTE2a LTR MaLR 1 337 -42 4 1069 361 0 0 39 chr4 63539008 63539059 -92091061 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 1069 675 204 35 14 chr4 63539924 63540068 -92090052 - B1_Mur2 SINE Alu -1 148 2 5 1069 5197 89 24 11 chr4 63541394 63542188 -92087932 - RLTR13C2 LTR ERVK -4 804 1 5 1069 956 315 17 14 chr4 63542192 63542537 -92087583 - Lx9 LINE L1 -240 7404 7059 5 1069 1782 294 71 43 chr4 63542965 63543739 -92086381 - Lx9 LINE L1 -608 7036 6241 5 1069 180 0 0 0 chr4 63543739 63543759 -92086361 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1069 597 28 0 0 chr4 63543758 63543829 -92086291 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1069 206 231 19 0 chr4 63543884 63543936 -92086184 + CT-rich Low_complexity Low_complexity 1 53 0 5 1069 859 254 12 8 chr4 63544133 63544375 -92085745 - Lx9 LINE L1 -6466 1142 900 5 1069 655 187 16 0 chr4 63544534 63544657 -92085463 + ORR1D1 LTR MaLR 1 125 -249 5 1069 970 66 0 0 chr4 63544681 63544803 -92085317 - L1_Mus1 LINE L1 -411 6156 6035 5 1069 3042 72 10 3 chr4 63544803 63545195 -92084925 + L1_Mus1 LINE L1 6173 6567 0 5 1069 231 36 0 0 chr4 63545220 63545248 -92084872 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1069 557 171 31 16 chr4 63545254 63545421 -92084699 + ORR1D1 LTR MaLR 153 366 -8 5 1069 244 327 27 18 chr4 63545661 63545773 -92084347 - Lx9 LINE L1 -6959 649 537 5 1069 499 338 7 0 chr4 63545882 63545900 -92084220 - RSINE1 SINE B4 -2 163 146 6 1069 360 0 0 0 chr4 63545900 63545940 -92084180 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1069 499 338 7 0 chr4 63545940 63546072 -92084048 - RSINE1 SINE B4 -20 145 13 6 1069 611 262 0 14 chr4 63546129 63546276 -92083844 - B1_Mur2 SINE Alu -1 148 4 6 1069 25 31 0 0 chr4 63546287 63546319 -92083801 + AT_rich Low_complexity Low_complexity 1 32 0 6 1069 1203 261 108 36 chr4 63546321 63546850 -92083270 - Lx9 LINE L1 -20 7624 7058 6 1069 815 217 31 36 chr4 63547000 63547196 -92082924 - B3A SINE B2 0 198 4 6 1069 447 331 29 17 chr4 63547847 63548019 -92082101 + MER21B LTR ERV1 606 779 -84 6 1069 1641 292 56 69 chr4 63548243 63549114 -92081006 - L1M2 LINE L1 -835 5308 4460 6 1069 4999 72 5 2 chr4 63549114 63549758 -92080362 + L1_Mus3 LINE L1 5993 6638 0 6 1069 1641 292 56 69 chr4 63549758 63549947 -92080173 - L1M2 LINE L1 -1684 4459 4262 6 1069 1113 273 57 87 chr4 63549944 63550549 -92079571 + Lx7 LINE L1 5366 5967 -1677 6 1069 948 204 11 6 chr4 63551167 63551349 -92078771 - B3 SINE B2 0 216 34 7 1069 513 321 7 0 chr4 63551460 63551600 -92078520 + B4A SINE B4 139 279 -13 7 1069 804 318 27 44 chr4 63551748 63552113 -92078007 - ORR1E LTR MaLR 0 359 1 7 1069 752 226 90 29 chr4 63552127 63552405 -92077715 + Charlie1b DNA MER1_type 69 363 -160 7 1069 1659 116 19 118 chr4 63552421 63552794 -92077326 + Lx2 LINE L1 6662 6997 0 7 1069 1274 269 68 8 chr4 63553847 63554200 -92075920 + MTE2b LTR MaLR 6 379 0 7 1069 1196 243 66 55 chr4 63554559 63554925 -92075195 + ORR1D2 LTR MaLR 1 370 0 7 1069 28 29 0 0 chr4 63554976 63555011 -92075109 + AT_rich Low_complexity Low_complexity 1 35 0 7 1069 8083 66 23 1 chr4 63555020 63556119 -92074001 - L1_Mus3 LINE L1 -7 6631 5510 7 1069 24 32 0 0 chr4 63556248 63556279 -92073841 + AT_rich Low_complexity Low_complexity 1 31 0 7 1069 430 269 108 31 chr4 63558413 63558636 -92071484 - HAL1 LINE L1 -760 1747 1508 8 1069 249 246 35 0 chr4 63559273 63559330 -92070790 - ID SINE ID -154 70 12 8 1069 268 271 0 45 chr4 63559860 63559949 -92070171 - MIRb SINE MIR -149 119 35 8 1069 264 30 0 0 chr4 63561059 63561092 -92069028 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1069 208 219 0 0 chr4 63561093 63561134 -92068986 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 8 1069 207 139 0 0 chr4 63561139 63561175 -92068945 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 8 1069 489 17 0 0 chr4 63561255 63561313 -92068807 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1069 242 300 0 0 chr4 63561691 63561749 -92068371 + CT-rich Low_complexity Low_complexity 14 71 0 8 1069 1080 124 0 0 chr4 63561749 63561918 -92068202 + (TTTC)n Simple_repeat Simple_repeat 3 171 0 8 1069 454 301 6 17 chr4 63561918 63562123 -92067997 + (TCCA)n Simple_repeat Simple_repeat 1 202 0 8 1069 365 236 14 0 chr4 63563200 63563272 -92066848 + ID4_ SINE ID 2 74 -9 9 1069 383 272 51 34 chr4 63563473 63563591 -92066529 - MER5A DNA MER1_type -69 120 1 9 1069 329 340 68 0 chr4 63565727 63565874 -92064246 - LTR33A_ LTR ERVL 0 531 375 9 1069 23 0 0 0 chr4 63565922 63565945 -92064175 + AT_rich Low_complexity Low_complexity 1 23 0 9 1069 288 0 0 0 chr4 63565957 63565989 -92064131 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1069 315 0 0 0 chr4 63565989 63566023 -92064097 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1069 208 292 15 0 chr4 63566025 63566090 -92064030 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1069 228 268 18 0 chr4 63566092 63566148 -92063972 - RSINE1 SINE B4 -2 163 107 9 1069 354 98 0 0 chr4 63566188 63566239 -92063881 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1069 239 139 47 0 chr4 63567354 63567397 -92062723 + MIR SINE MIR 88 132 -76 9 1069 320 352 18 41 chr4 63567759 63567928 -92062192 + MLT1J LTR MaLR 14 178 -334 1 1069 271 333 34 51 chr4 63568978 63569212 -92060908 + MERVL_2A-int LTR ERVL 4182 4411 -1350 1 1070 400 320 112 8 chr4 63570503 63570752 -92059368 + L1MEg LINE L1 855 1129 -4955 1 1070 405 257 116 14 chr4 63570753 63570899 -92059221 + B3A SINE B2 6 166 -32 1 1070 450 0 0 0 chr4 63570899 63570949 -92059171 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1070 495 0 0 0 chr4 63570949 63571003 -92059117 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1070 1972 257 45 2 chr4 63571072 63571520 -92058600 + Lx6 LINE L1 6812 7278 -182 1 1070 248 294 63 0 chr4 63571706 63571832 -92058288 - Charlie7 DNA MER1_type -1921 691 558 1 1070 411 21 0 0 chr4 63572179 63572227 -92057893 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1070 269 250 7 10 chr4 63572547 63572651 -92057469 + L1MA5 LINE L1 6166 6277 -23 1 1070 280 320 16 0 chr4 63572715 63572837 -92057283 + MER5A1 DNA MER1_type 40 163 -3 1 1070 248 285 43 65 chr4 63573284 63573423 -92056697 + MLT1A LTR MaLR 71 206 -306 1 1070 748 262 47 24 chr4 63573774 63573985 -92056135 + B4A SINE B4 3 218 -74 1 1070 33 43 0 0 chr4 63573992 63574039 -92056081 + AT_rich Low_complexity Low_complexity 1 47 0 1 1070 345 47 0 0 chr4 63574112 63574155 -92055965 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1070 2015 238 32 7 chr4 63574193 63574731 -92055389 + Lx2B LINE L1 6414 7008 0 1 1070 3187 61 7 31 chr4 63574913 63575336 -92054784 + L1_Mus1 LINE L1 6155 6567 0 1 1070 382 333 99 5 chr4 63576179 63576390 -92053730 - Lx8 LINE L1 -274 7199 6969 1 1070 445 281 6 61 chr4 63576393 63576529 -92053591 - MLT1A0 LTR MaLR -181 184 57 1 1070 1254 72 48 43 chr4 63576529 63576717 -92053403 - B2_Mm2 SINE B2 -6 189 1 1 1070 445 281 6 61 chr4 63576717 63576743 -92053377 - MLT1A0 LTR MaLR -309 56 31 1 1070 298 265 82 56 chr4 63577277 63577425 -92052695 + MLT1A LTR MaLR 215 343 -65 1 1070 196 314 0 0 chr4 63578021 63578091 -92052029 + MIR SINE MIR 26 95 -113 1 1070 242 298 105 15 chr4 63578449 63578582 -92051538 - MLT1J LTR MaLR -328 184 40 1 1070 402 260 170 7 chr4 63578889 63579036 -92051084 - MER33 DNA MER1_type -147 177 7 1 1070 1174 87 0 6 chr4 63579542 63579715 -92050405 - B2_Mm2 SINE B2 -9 186 15 1 1070 233 281 48 24 chr4 63579946 63580030 -92050090 + L1M5 LINE L1 5535 5620 -504 1 1070 8175 45 9 0 chr4 63580122 63581209 -92048911 - L1Md_F2 LINE L1 0 6582 5486 1 1070 8404 91 3 39 chr4 63581207 63583319 -92046801 - L1Md_F LINE L1 -3555 2328 296 1 1070 1014 67 0 0 chr4 63583699 63583834 -92046286 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 1070 501 47 0 0 chr4 63584165 63584229 -92045891 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1070 315 324 18 9 chr4 63587774 63587883 -92042237 - PB1D10 SINE Alu -6 111 2 1 1070 810 21 0 0 chr4 63588063 63588159 -92041961 + (CAAAC)n Simple_repeat Simple_repeat 2 97 0 1 1070 279 0 0 0 chr4 63588187 63588218 -92041902 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 1070 198 71 0 0 chr4 63589112 63589140 -92040980 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1070 211 241 0 18 chr4 63589768 63589823 -92040297 + T-rich Low_complexity Low_complexity 2 55 0 1 1070 22 70 0 0 chr4 63592249 63592292 -92037828 + AT_rich Low_complexity Low_complexity 1 43 0 1 1070 431 289 24 30 chr4 63592368 63592532 -92037588 - MER104 DNA Tc2 0 181 19 1 1070 1829 257 5 12 chr4 63593154 63593567 -92036553 + Lx6 LINE L1 7025 7434 -26 1 1070 420 276 16 8 chr4 63593682 63593806 -92036314 - RSINE1 SINE B4 -38 127 3 1 1070 422 283 125 8 chr4 63594246 63594550 -92035570 + MTEa LTR MaLR 4 371 -8 1 1070 766 324 18 26 chr4 63594561 63594942 -92035178 - L1MD LINE L1 -519 5723 5346 1 1070 600 251 106 22 chr4 63595055 63595355 -92034765 + L1M4 LINE L1 5298 5605 -579 1 1070 4810 93 34 10 chr4 63595377 63596081 -92034039 + Lx3_Mus LINE L1 6287 7007 -2 1 1070 225 94 0 0 chr4 63597345 63597377 -92032743 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1070 958 265 80 14 chr4 63597378 63597665 -92032455 - MTE2a LTR MaLR -69 310 5 1 1070 624 343 30 0 chr4 63597865 63598130 -92031990 + B4A SINE B4 2 274 -18 1 1070 243 0 0 0 chr4 63598132 63598159 -92031961 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1070 899 285 67 29 chr4 63598168 63598212 -92031908 - MLT2D LTR ERVL -20 394 344 1 1070 827 53 0 18 chr4 63598212 63598326 -92031794 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1 1070 899 285 67 29 chr4 63598326 63598657 -92031463 - MLT2D LTR ERVL -71 343 5 1 1070 222 222 0 0 chr4 63599286 63599340 -92030780 + CT-rich Low_complexity Low_complexity 2 55 0 1 1070 262 343 37 9 chr4 63600252 63600361 -92029759 + L2c LINE L2 3258 3369 -18 1 1070 281 333 68 0 chr4 63601994 63602126 -92027994 + MIRb SINE MIR 112 252 -16 1 1070 343 304 97 25 chr4 63602602 63602798 -92027322 - LTR16E1 LTR ERVL -70 468 259 1 1070 198 253 195 0 chr4 63604263 63604350 -92025770 + MIR SINE MIR 116 219 -43 1 1070 477 0 0 0 chr4 63607947 63608000 -92022120 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1070 444 143 0 0 chr4 63608000 63608098 -92022022 + (GA)n Simple_repeat Simple_repeat 2 99 0 1 1070 852 190 0 0 chr4 63608221 63608358 -92021762 - B1_Mur4 SINE Alu -13 137 1 1 1070 2929 90 2 7 chr4 63609647 63610050 -92020070 + L1_Mus1 LINE L1 6167 6567 0 1 1070 709 327 32 109 chr4 63611200 63611577 -92018543 + MTEa LTR MaLR 1 348 -31 1 1070 7850 54 7 2 chr4 63611580 63611778 -92018342 - L1Md_F2 LINE L1 -33 6549 6353 1 1070 189 0 0 0 chr4 63611778 63611799 -92018321 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 1 1070 23410 63 6 22 chr4 63611799 63615421 -92014699 - L1Md_F2 LINE L1 -230 6352 2790 1 1070 6453 84 10 7 chr4 63615408 63616505 -92013615 - L1Md_F2 LINE L1 -4368 1515 409 1 1070 1078 294 26 31 chr4 63616803 63617154 -92012966 - ORR1E LTR MaLR -3 356 8 1 1070 3015 176 27 16 chr4 63617195 63617756 -92012364 + RLTR12A LTR ERVK 1 567 -1 1 1070 258 341 142 53 chr4 63618651 63618989 -92011131 - LTR33 LTR ERVL -116 399 32 1 1070 872 133 283 0 chr4 63619214 63619387 -92010733 - URR1A DNA MER1_type 0 226 5 1 1070 183 220 136 0 chr4 63620414 63620473 -92009647 - MIRb SINE MIR -99 169 103 1 1070 23 0 0 0 chr4 63620947 63620970 -92009150 + AT_rich Low_complexity Low_complexity 1 23 0 1 1070 1634 178 42 22 chr4 63621867 63622304 -92007816 + RMER17C LTR ERVK 12 437 -521 1 1070 468 0 0 0 chr4 63622322 63622374 -92007746 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1070 379 250 0 87 chr4 63623703 63623830 -92006290 + PB1D10 SINE Alu 2 117 0 1 1070 468 35 0 0 chr4 63624731 63624789 -92005331 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1070 648 276 53 16 chr4 63627202 63627390 -92002730 - ID_B1 SINE B4 -28 196 2 1 1070 187 324 27 0 chr4 63629364 63629438 -92000682 - MIRc SINE MIR -124 144 69 1 1070 331 280 54 73 chr4 63630382 63630586 -91999534 + HAL1 LINE L1 713 912 -1595 1 1070 1094 61 74 0 chr4 63630686 63630834 -91999286 + L1_Mus1 LINE L1 6409 6567 0 1 1070 1038 238 98 27 chr4 63633129 63633457 -91996663 + ORR1E LTR MaLR 5 355 -4 1 1070 214 204 20 0 chr4 63633977 63634026 -91996094 + MIRc SINE MIR 121 170 -98 1 1070 286 306 35 0 chr4 63634392 63634477 -91995643 + PB1D10 SINE Alu 28 115 -2 1 1070 1212 50 0 0 chr4 63634627 63634787 -91995333 + B2_Mm2 SINE B2 2 161 -34 1 1070 369 0 0 0 chr4 63634787 63634828 -91995292 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 1070 992 146 32 16 chr4 63634828 63634855 -91995265 + B2_Mm1t SINE B2 163 192 -1 1 1070 432 316 41 0 chr4 63638719 63638890 -91991230 + MIRb SINE MIR 77 254 -14 1 1070 185 304 54 0 chr4 63639137 63639193 -91990927 + MIRc SINE MIR 112 170 -98 1 1070 467 349 70 52 chr4 63639468 63639755 -91990365 + B4A SINE B4 1 292 0 1 1070 405 0 0 0 chr4 63639799 63639844 -91990276 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1070 591 316 41 14 chr4 63641768 63641986 -91988134 + B4A SINE B4 4 227 -65 1 1070 552 264 138 47 chr4 63641986 63642240 -91987880 + B4A SINE B4 2 278 -14 1 1070 489 17 0 0 chr4 63642337 63642395 -91987725 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1070 293 194 13 130 chr4 63642423 63642500 -91987620 + B4 SINE B4 225 292 0 1 1070 216 289 0 0 chr4 63642500 63642576 -91987544 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1070 229 224 44 15 chr4 63642718 63642786 -91987334 + MIR SINE MIR 71 140 -68 1 1070 181 379 126 5 chr4 63643384 63643575 -91986545 - MIRb SINE MIR -24 244 31 1 1070 797 0 11 0 chr4 63647090 63647183 -91982937 + (TTCTC)n Simple_repeat Simple_repeat 1 94 0 1 1070 182 128 43 0 chr4 63648737 63648784 -91981336 + T-rich Low_complexity Low_complexity 2 50 0 1 1070 1098 273 64 52 chr4 63649093 63649592 -91980528 + L1MA7 LINE L1 5745 6249 -42 1 1070 221 136 0 43 chr4 63649592 63649654 -91980466 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1070 862 60 0 0 chr4 63650904 63651020 -91979100 + B1_Mm SINE Alu 32 147 0 1 1070 467 71 35 12 chr4 63656436 63656522 -91973598 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1070 213 261 283 21 chr4 63657142 63657287 -91972833 + MIRb SINE MIR 2 184 -84 1 1070 339 25 0 0 chr4 63657839 63657879 -91972241 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1070 513 32 0 0 chr4 63657879 63657941 -91972179 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1070 815 309 42 31 chr4 63657941 63658228 -91971892 - B4A SINE B4 0 292 3 2 1070 993 210 118 247 chr4 63659162 63659774 -91970346 + MT2A LTR ERVL 1 533 0 2 1070 195 152 0 0 chr4 63662526 63662572 -91967548 + A-rich Low_complexity Low_complexity 1 46 0 2 1070 224 276 13 26 chr4 63664512 63664590 -91965530 + GA-rich Low_complexity Low_complexity 4 80 0 2 1070 205 310 0 0 chr4 63664638 63664696 -91965424 + CT-rich Low_complexity Low_complexity 5 62 0 2 1070 251 352 78 70 chr4 63665940 63666184 -91963936 + MLT1J LTR MaLR 158 403 -109 2 1070 390 170 0 0 chr4 63667731 63667825 -91962295 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 1070 201 217 43 0 chr4 63669427 63669473 -91960647 + (CATG)n Simple_repeat Simple_repeat 1 48 0 2 1070 510 91 0 0 chr4 63670207 63670284 -91959836 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1070 430 261 42 65 chr4 63670326 63670494 -91959626 - RSINE1 SINE B4 0 165 2 2 1070 1789 151 204 0 chr4 63671110 63671467 -91958653 + RLTR23 LTR ERV1 1 430 0 2 1070 243 0 0 0 chr4 63671485 63671512 -91958608 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 1070 184 175 0 48 chr4 63672497 63672539 -91957581 + MIRc SINE MIR 155 194 -74 2 1070 272 257 0 7 chr4 63672988 63673129 -91956991 + (TG)n Simple_repeat Simple_repeat 1 140 0 2 1070 416 306 167 0 chr4 63673149 63673293 -91956827 - B4 SINE B4 0 292 125 2 1070 469 270 16 0 chr4 63673709 63673835 -91956285 - B1F SINE Alu 0 149 22 2 1070 317 245 32 11 chr4 63673874 63673969 -91956151 + MLT1H LTR MaLR 382 478 -71 2 1070 259 329 65 37 chr4 63675315 63675530 -91954590 + MIRb SINE MIR 31 251 -17 2 1070 280 333 105 0 chr4 63675703 63675874 -91954246 + MIR SINE MIR 41 229 -33 2 1070 865 226 53 0 chr4 63676388 63676578 -91953542 + B3 SINE B2 1 200 -16 2 1070 297 0 0 0 chr4 63676578 63676611 -91953509 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 2 1070 332 223 61 50 chr4 63676737 63676836 -91953284 - PB1D10 SINE Alu -40 109 10 2 1070 182 342 38 0 chr4 63679868 63679947 -91950173 + MIRb SINE MIR 116 197 -71 2 1070 195 238 54 4 chr4 63680145 63680207 -91949913 + MIR SINE MIR 88 153 -115 2 1070 424 250 182 47 chr4 63680335 63680549 -91949571 + B4A SINE B4 1 243 -49 2 1070 200 267 0 0 chr4 63680601 63680646 -91949474 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1070 519 228 192 11 chr4 63680686 63680868 -91949252 - B3 SINE B2 0 216 2 2 1070 607 288 94 75 chr4 63683385 63683640 -91946480 + B4 SINE B4 11 270 -22 2 1070 470 31 16 0 chr4 63683654 63683718 -91946402 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1070 957 222 14 49 chr4 63684253 63684507 -91945613 - B3 SINE B2 -2 214 1 2 1070 215 272 109 0 chr4 63685925 63686017 -91944103 + MIRb SINE MIR 115 216 -52 2 1070 471 318 40 67 chr4 63686275 63686575 -91943545 - B4A SINE B4 0 292 1 2 1070 477 239 66 33 chr4 63687176 63687388 -91942732 + L1MA9 LINE L1 6094 6312 0 2 1070 1725 246 106 25 chr4 63687414 63688014 -91942106 + Lx9 LINE L1 6996 7644 0 2 1070 525 174 23 0 chr4 63688164 63688296 -91941824 + (TCCA)n Simple_repeat Simple_repeat 2 136 0 2 1070 197 430 10 0 chr4 63688296 63688396 -91941724 - L2b LINE L2 0 3375 3275 2 1070 345 328 61 20 chr4 63688883 63689079 -91941041 - MIRb SINE MIR -46 222 19 2 1070 207 239 52 78 chr4 63690768 63690845 -91939275 - MIR SINE MIR -172 90 16 2 1070 249 263 129 17 chr4 63691176 63691292 -91938828 + MER103 DNA DNA 28 156 -10 2 1070 799 252 62 114 chr4 63692177 63692535 -91937585 + MTE2a LTR MaLR 18 356 -23 2 1070 180 111 0 0 chr4 63692693 63692720 -91937400 + (GGAGAA)n Simple_repeat Simple_repeat 6 32 0 2 1070 212 293 13 13 chr4 63692721 63692797 -91937323 + GA-rich Low_complexity Low_complexity 2 77 0 2 1070 395 294 48 93 chr4 63693103 63693414 -91936706 + ORR1E LTR MaLR 42 338 -21 2 1070 499 278 8 60 chr4 63693655 63693789 -91936331 + RSINE1 SINE B4 3 129 -36 2 1070 180 0 0 0 chr4 63693805 63693825 -91936295 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1070 240 111 0 0 chr4 63693829 63693865 -91936255 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1070 706 300 77 32 chr4 63694911 63695249 -91934871 + MLT1A0 LTR MaLR 5 357 -8 2 1070 404 212 8 50 chr4 63696727 63696846 -91933274 - MTEa LTR MaLR 0 379 266 2 1070 311 183 0 0 chr4 63696974 63697034 -91933086 + MERVL_2A-int LTR ERVL 5700 5759 -2 2 1070 914 327 66 60 chr4 63697036 63697566 -91932554 + MT2A LTR ERVL 1 533 0 2 1070 1630 119 85 75 chr4 63697798 63698117 -91932003 + ORR1A4 LTR MaLR 1 322 -7 2 1070 831 228 63 0 chr4 63698307 63698496 -91931624 + MT2A LTR ERVL 1 201 -332 2 1070 2141 178 60 82 chr4 63698496 63698987 -91931133 + RMER20B LTR ERVK 1 473 -154 2 1070 423 0 0 0 chr4 63698987 63699034 -91931086 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1070 306 0 0 0 chr4 63699034 63699067 -91931053 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1070 2141 178 60 82 chr4 63699067 63699126 -91930994 + RMER20B LTR ERVK 474 539 -88 2 1070 351 309 32 103 chr4 63699221 63699376 -91930744 + ID_B1 SINE B4 81 224 0 2 1070 330 159 16 0 chr4 63699525 63699552 -91930568 - HAL1-3A_ME LINE L1 -818 2040 2013 2 1070 636 56 0 0 chr4 63699552 63699641 -91930479 + (TCTCTG)n Simple_repeat Simple_repeat 6 94 0 2 1070 330 159 16 0 chr4 63699641 63699676 -91930444 - HAL1-3A_ME LINE L1 -846 2012 1978 2 1070 310 325 87 65 chr4 63699677 63699953 -91930167 + MLT1E LTR MaLR 322 603 -50 2 1070 1141 70 0 7 chr4 63699970 63700115 -91930005 - B1_Mus2 SINE Alu -2 145 2 2 1070 267 333 35 9 chr4 63700284 63700399 -91929721 + MIR3 SINE MIR 37 154 -54 2 1070 447 68 0 0 chr4 63700428 63700487 -91929633 + (TCC)n Simple_repeat Simple_repeat 3 61 0 2 133 26 30 0 0 chr4 63700960 63700993 -91929127 + AT_rich Low_complexity Low_complexity 1 33 0 2 1071 1537 54 5 0 chr4 63700995 63701181 -91928939 + B2_Mm2 SINE B2 2 188 -7 2 1071 382 240 142 16 chr4 63701586 63701713 -91928407 + B3A SINE B2 1 143 -55 2 1071 1160 275 9 25 chr4 63702499 63702816 -91927304 + MTE2b LTR MaLR 6 317 -62 2 1071 1061 184 26 35 chr4 63703290 63703516 -91926604 + URR1B DNA MER1_type 2 225 0 2 1071 306 164 0 0 chr4 63704143 63704198 -91925922 + CT-rich Low_complexity Low_complexity 3 57 0 2 1071 591 123 24 41 chr4 63704236 63704405 -91925715 + (TCTCTG)n Simple_repeat Simple_repeat 2 167 0 2 1071 367 357 35 6 chr4 63704641 63704810 -91925310 + MIRb SINE MIR 4 177 -91 2 1071 453 62 0 0 chr4 63706058 63706123 -91923997 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 1071 215 198 0 0 chr4 63706873 63706921 -91923199 - MIRm SINE MIR -123 153 101 2 1071 189 0 0 0 chr4 63709327 63709348 -91920772 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1071 1523 182 66 44 chr4 63709945 63710308 -91919812 - Lx5 LINE L1 0 7050 6680 2 1071 240 315 99 27 chr4 63710341 63710452 -91919668 + PB1D7 SINE Alu 1 119 -1 2 1071 677 309 114 56 chr4 63710722 63711515 -91918605 - L1MA4 LINE L1 -313 5999 5122 2 1071 23 0 0 0 chr4 63711699 63711722 -91918398 + AT_rich Low_complexity Low_complexity 1 23 0 2 1071 544 271 39 0 chr4 63711731 63711860 -91918260 + B1_Mur1 SINE Alu 3 136 -13 2 1071 881 216 75 19 chr4 63711861 63712073 -91918047 - MTD LTR MaLR -2 417 194 2 1071 1852 266 29 26 chr4 63712081 63712632 -91917488 - Lx6 LINE L1 -26 7434 6503 2 1071 2280 223 58 24 chr4 63712633 63713166 -91916954 + Lx6 LINE L1 5711 6261 -1199 2 1071 1137 136 70 31 chr4 63713209 63713437 -91916683 - Lx5 LINE L1 0 7050 6814 2 1071 675 260 69 6 chr4 63713450 63713624 -91916496 - MTD LTR MaLR -211 208 24 2 1071 183 273 45 25 chr4 63713779 63713867 -91916253 + L2a LINE L2 3282 3424 -2 2 1071 21 57 0 0 chr4 63715081 63715116 -91915004 + AT_rich Low_complexity Low_complexity 1 35 0 2 1071 22 35 0 0 chr4 63715433 63715462 -91914658 + AT_rich Low_complexity Low_complexity 1 29 0 2 1071 2962 87 2 0 chr4 63715846 63716239 -91913881 - L1_Mus2 LINE L1 0 6566 6173 2 1071 215 157 20 0 chr4 63716246 63716297 -91913823 + CT-rich Low_complexity Low_complexity 2 53 0 2 1071 21 36 0 0 chr4 63716373 63716401 -91913719 + AT_rich Low_complexity Low_complexity 1 28 0 2 1071 359 41 20 0 chr4 63716646 63716695 -91913425 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1071 248 28 56 0 chr4 63717217 63717253 -91912867 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1071 262 276 82 31 chr4 63717381 63717478 -91912642 + MLT1A1 LTR MaLR 305 406 -2 2 1071 315 0 0 0 chr4 63717936 63717971 -91912149 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1071 222 37 0 0 chr4 63717971 63717997 -91912123 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1071 488 333 142 17 chr4 63718576 63718991 -91911129 + MLT1D LTR MaLR 30 496 -9 2 1071 1739 91 4 4 chr4 63721111 63721353 -91908767 + L1_Mus4 LINE L1 6385 6626 -10 2 1071 540 45 0 0 chr4 63721702 63721769 -91908351 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1071 21 0 0 0 chr4 63722343 63722364 -91907756 + AT_rich Low_complexity Low_complexity 1 21 0 2 1071 841 245 36 10 chr4 63723115 63723309 -91906811 - B3 SINE B2 -14 202 4 2 1071 336 48 0 0 chr4 63724121 63724163 -91905957 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1071 1061 238 114 42 chr4 63724215 63724548 -91905572 + ORR1E LTR MaLR 1 357 -2 2 1071 213 348 40 23 chr4 63724616 63724784 -91905336 - MIRm SINE MIR -90 178 5 2 1071 474 264 136 32 chr4 63725239 63725489 -91904631 - B4A SINE B4 -12 280 5 3 1071 297 285 80 39 chr4 63725493 63725608 -91904512 + MIRc SINE MIR 47 170 -106 3 1071 543 279 29 22 chr4 63725706 63725845 -91904275 - B1F SINE Alu -6 143 4 3 1071 326 337 59 82 chr4 63725969 63726189 -91903931 + MER20 DNA MER1_type 5 219 0 3 1071 956 311 41 21 chr4 63726850 63727188 -91902932 - MLT1A0 LTR MaLR 0 365 21 3 1071 183 333 108 60 chr4 63729977 63730143 -91899977 - L2c LINE L2 -31 3356 3183 3 1071 204 352 82 67 chr4 63730400 63730534 -91899586 - L2c LINE L2 -604 2815 2680 3 1071 237 108 0 0 chr4 63730812 63730849 -91899271 + (ATTTG)n Simple_repeat Simple_repeat 3 39 0 3 1071 1070 323 42 11 chr4 63731366 63731720 -91898400 + MLT1A0 LTR MaLR 1 365 0 3 1071 411 193 0 0 chr4 63732356 63732439 -91897681 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1071 392 257 93 81 chr4 63732506 63732667 -91897453 - B4 SINE B4 -12 280 118 3 1071 545 344 79 14 chr4 63732758 63733124 -91896996 - Charlie2b DNA MER1_type -247 2535 2146 3 1071 405 0 0 0 chr4 63733197 63733242 -91896878 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1071 22 0 0 0 chr4 63733401 63733423 -91896697 + AT_rich Low_complexity Low_complexity 1 22 0 3 1071 331 273 64 7 chr4 63733460 63733600 -91896520 - L1MA5 LINE L1 -5 6295 6148 3 1071 226 230 149 0 chr4 63733605 63733692 -91896428 + L1MA5 LINE L1 6027 6126 -174 3 1071 299 331 8 16 chr4 63733701 63733827 -91896293 - Charlie2b DNA MER1_type -882 1900 1776 3 1071 927 156 22 0 chr4 63734076 63734256 -91895864 + Lx LINE L1 6470 6653 -1 3 1071 386 297 58 7 chr4 63734471 63734610 -91895510 + MER117 DNA MER1_type 3 148 -49 3 1071 455 330 34 30 chr4 63735494 63735731 -91894389 - L1M5 LINE L1 -397 5727 5490 3 1071 304 188 188 0 chr4 63738844 63738913 -91891207 - ID_B1 SINE B4 -6 218 137 3 1071 715 120 25 25 chr4 63738878 63738998 -91891122 + ORR1A3 LTR MaLR 207 326 0 3 1071 386 334 1 1 chr4 63740058 63740216 -91889904 + Lx9 LINE L1 7169 7455 -189 3 1071 224 250 0 18 chr4 63740917 63740974 -91889146 + GA-rich Low_complexity Low_complexity 6 61 0 3 1071 301 269 90 0 chr4 63740999 63741066 -91889054 - PB1D10 SINE Alu -44 73 1 3 1071 949 274 0 0 chr4 63741244 63741430 -91888690 + B3 SINE B2 2 187 -29 3 1071 782 48 10 0 chr4 63743333 63743436 -91886684 + (TCCC)n Simple_repeat Simple_repeat 1 104 0 3 1071 864 262 58 24 chr4 63743450 63743657 -91886463 - ID_B1 SINE B4 -8 216 3 3 1071 314 247 140 0 chr4 63744220 63744313 -91885807 + MER5A DNA MER1_type 59 164 -25 3 1071 191 394 32 0 chr4 63745526 63745620 -91884500 - MIR SINE MIR -34 228 132 3 1071 228 67 0 0 chr4 63746332 63746362 -91883758 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1071 242 357 137 6 chr4 63747175 63747358 -91882762 - MLT1I LTR MaLR -11 400 194 3 1071 34 42 0 0 chr4 63749016 63749064 -91881056 + AT_rich Low_complexity Low_complexity 1 48 0 3 1071 523 58 35 0 chr4 63749128 63749215 -91880905 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 3 1071 688 278 0 14 chr4 63749240 63749448 -91880672 - Lx9 LINE L1 -215 7429 7225 3 1071 21 36 0 0 chr4 63749532 63749560 -91880560 + AT_rich Low_complexity Low_complexity 1 28 0 3 1071 231 423 0 6 chr4 63750743 63750907 -91879213 + MIR SINE MIR 80 242 -20 3 1071 862 167 102 64 chr4 63751573 63751809 -91878311 - L1VL2 LINE L1 -5847 488 244 3 1071 4520 189 29 5 chr4 63751873 63752766 -91877354 + Lx9 LINE L1 6600 7514 -130 3 1071 440 163 0 11 chr4 63752768 63752855 -91877265 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1071 25 0 0 0 chr4 63752864 63752889 -91877231 + AT_rich Low_complexity Low_complexity 1 25 0 3 1071 618 284 108 71 chr4 63753044 63753396 -91876724 + MLT1A LTR MaLR 10 374 0 3 1071 522 46 0 0 chr4 63753711 63753776 -91876344 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1071 256 366 35 7 chr4 63754537 63754680 -91875440 - L4 LINE RTE -119 1910 1764 3 1071 663 67 0 0 chr4 63754706 63754795 -91875325 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1071 258 214 0 0 chr4 63754797 63754881 -91875239 + GA-rich Low_complexity Low_complexity 1 84 0 3 1071 23 0 0 0 chr4 63755172 63755195 -91874925 + AT_rich Low_complexity Low_complexity 1 23 0 3 1071 263 278 14 14 chr4 63755807 63755880 -91874240 - Charlie9 DNA MER1_type 0 2757 2685 3 1071 413 245 21 21 chr4 63756117 63756213 -91873907 - MLT1I LTR MaLR 0 411 316 3 1071 434 291 70 139 chr4 63756339 63756511 -91873609 + MER45A DNA Tip100 15 174 -4 3 1071 4052 71 0 34 chr4 63756544 63757112 -91873008 + L1Md_F2 LINE L1 6030 6578 -4 3 1071 465 19 0 0 chr4 63757129 63757183 -91872937 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 1071 491 315 13 0 chr4 63757194 63757343 -91872777 - Lx5 LINE L1 -77 6973 6823 3 1071 1440 179 47 0 chr4 63757801 63758120 -91872000 - ORR1A3-int LTR MaLR -912 1051 718 3 1071 535 252 33 13 chr4 63758149 63758302 -91871818 + Lx6 LINE L1 7209 7364 -96 3 1071 561 68 0 0 chr4 63758306 63758380 -91871740 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 3 1071 244 274 20 0 chr4 63758406 63758457 -91871663 - MER45A DNA Tip100 -4 174 123 3 1071 701 200 45 31 chr4 63758430 63758609 -91871511 + ORR1A3-int LTR MaLR 405 597 -773 3 1071 450 0 0 0 chr4 63758626 63758676 -91871444 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1071 283 261 155 88 chr4 63758676 63758857 -91871263 - MLT1D LTR MaLR -59 446 217 3 1071 266 344 16 32 chr4 63759055 63759181 -91870939 - MIRb SINE MIR -40 228 105 3 1071 670 269 76 0 chr4 63760125 63760322 -91869798 - ID_B1 SINE B4 -10 214 3 3 1071 279 0 0 0 chr4 63760464 63760495 -91869625 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 3 1071 3084 95 18 7 chr4 63760496 63760943 -91869177 - Lx3_Mus LINE L1 -17 6992 6541 3 1071 374 323 59 71 chr4 63761199 63761452 -91868668 + MIRb SINE MIR 19 268 0 3 1071 184 410 9 9 chr4 63762174 63762280 -91867840 - MIRc SINE MIR -121 147 42 3 1071 196 247 12 12 chr4 63763734 63763820 -91866300 + GA-rich Low_complexity Low_complexity 3 88 0 3 1071 3652 204 71 24 chr4 63764081 63765002 -91865118 - Lx2B LINE L1 -2 6974 6010 3 1071 6365 152 39 6 chr4 63765002 63766208 -91863912 + Lx3C LINE L1 3670 4915 -962 3 1071 2279 158 34 2 chr4 63766191 63766340 -91863780 + Lx3C LINE L1 5467 5619 -267 3 1071 315 0 0 0 chr4 63766340 63766375 -91863745 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1071 2279 136 31 3 chr4 63766375 63766697 -91863423 + Lx3C LINE L1 5617 5949 -1027 3 1071 232 83 0 0 chr4 63766697 63766733 -91863387 + Lx3C LINE L1 5917 5952 -1048 3 1071 192 97 0 0 chr4 63766733 63766764 -91863356 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 3 1071 507 107 0 0 chr4 63766862 63766937 -91863183 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1071 907 83 121 0 chr4 63767067 63767199 -91862921 - B1_Mus1 SINE Alu 0 148 1 3 1071 465 122 0 0 chr4 63767199 63767273 -91862847 + Lx3C LINE L1 5942 6015 -985 3 1071 416 339 133 38 chr4 63767281 63767679 -91862441 - L1M5 LINE L1 -1124 5022 4587 3 1071 349 312 24 127 chr4 63768271 63768484 -91861636 + MIR SINE MIR 65 255 -7 3 1071 209 171 0 0 chr4 63768740 63768775 -91861345 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 3 1071 728 218 18 0 chr4 63768798 63768963 -91861157 + Lx9 LINE L1 7257 7424 -220 3 1071 180 216 113 38 chr4 63769031 63769137 -91860983 - L2 LINE L2 -1322 2097 1984 3 1071 1017 136 22 1 chr4 63769203 63769394 -91860726 - Lx2B LINE L1 -1539 5934 5739 3 1071 38820 15 1 6 chr4 63769393 63775683 -91854437 - L1Md_A LINE L1 0 6582 327 3 1071 3784 173 8 25 chr4 63775675 63776409 -91853711 - Lx2B LINE L1 -130 5747 5026 3 1071 3844 192 51 13 chr4 63776410 63777409 -91852711 + Lx4B LINE L1 5917 7058 0 3 1071 4859 68 6 8 chr4 63777534 63778183 -91851937 + L1_Mus3 LINE L1 5986 6633 -5 3 1071 404 192 10 0 chr4 63778216 63778320 -91851800 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 1071 220 160 20 20 chr4 63778322 63778373 -91851747 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 3 1071 1464 224 29 35 chr4 63779607 63779950 -91850170 - RMER19C LTR ERVK 0 611 271 3 1071 799 216 28 2 chr4 63780637 63780877 -91849243 - RMER19C LTR ERVK -331 280 1 3 1071 657 343 171 20 chr4 63782555 63782993 -91847127 + MLT1F LTR MaLR 1 504 -44 3 1071 408 71 0 0 chr4 63783257 63783313 -91846807 + (TATG)n Simple_repeat Simple_repeat 3 58 0 3 1071 22 0 0 0 chr4 63783354 63783376 -91846744 + AT_rich Low_complexity Low_complexity 1 22 0 3 1071 510 278 0 7 chr4 63783523 63783542 -91846578 + L1_Mur1 LINE L1 5743 5761 -125 3 1071 3163 67 0 2 chr4 63783542 63783946 -91846174 - L1Md_F2 LINE L1 -13 6569 6167 3 1071 2987 64 0 29 chr4 63783946 63784366 -91845754 + L1Md_F2 LINE L1 5759 6166 -416 3 1071 558 207 54 0 chr4 63784762 63784873 -91845247 + RMER20B LTR ERVK 10 126 -501 3 1071 186 43 0 0 chr4 63785044 63785067 -91845053 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1071 21 0 0 0 chr4 63786548 63786569 -91843551 + AT_rich Low_complexity Low_complexity 1 21 0 3 1071 1062 74 23 0 chr4 63787026 63787251 -91842869 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 3 1071 2476 46 0 7 chr4 63787902 63788210 -91841910 + L1Md_F2 LINE L1 6265 6570 -12 3 1071 459 299 19 0 chr4 63788493 63788600 -91841520 - RSINE1 SINE B4 -55 110 2 3 1071 201 309 50 30 chr4 63789898 63789998 -91840122 - MIRc SINE MIR 0 268 167 3 1071 521 201 199 12 chr4 63791406 63791441 -91838679 - RLTR28 LTR ERVL -14 510 470 3 1071 588 29 0 0 chr4 63791441 63791511 -91838609 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1071 333 0 0 0 chr4 63791511 63791547 -91838573 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1071 1384 170 227 7 chr4 63791547 63791925 -91838195 - RLTR28 LTR ERVL -55 469 6 3 1071 310 402 40 15 chr4 63792519 63792721 -91837399 - MLT1J LTR MaLR -296 216 10 3 1071 2056 142 317 47 chr4 63792750 63793177 -91836943 + MT2B LTR ERVL 1 558 -43 3 1071 504 0 0 0 chr4 63793177 63793233 -91836887 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1071 2056 142 317 47 chr4 63793233 63793278 -91836842 + MT2B LTR ERVL 559 601 0 3 1071 209 393 63 29 chr4 63794242 63794449 -91835671 + MIRb SINE MIR 26 239 -29 3 1071 414 304 83 55 chr4 63794573 63794915 -91835205 - MLT1D LTR MaLR -3 502 97 4 1071 366 23 0 0 chr4 63794950 63794993 -91835127 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1071 315 0 0 0 chr4 63795071 63795106 -91835014 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1071 261 0 0 0 chr4 63795106 63795134 -91834986 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1071 441 0 0 0 chr4 63795923 63795972 -91834148 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1071 360 0 0 0 chr4 63796447 63796487 -91833633 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1071 795 124 0 0 chr4 63796487 63796632 -91833488 + (GA)n Simple_repeat Simple_repeat 1 145 0 4 1071 280 209 178 68 chr4 63797052 63797170 -91832950 - MIRb SINE MIR -8 260 130 4 1071 2443 56 0 0 chr4 63797633 63797935 -91832185 - L1Md_F2 LINE L1 -12 6570 6269 4 1071 550 323 91 71 chr4 63797990 63798343 -91831777 + MTEa LTR MaLR 3 362 -17 4 1071 300 212 0 0 chr4 63799258 63799324 -91830796 + T-rich Low_complexity Low_complexity 4 69 0 4 1071 239 358 83 22 chr4 63799520 63799700 -91830420 - MIRb SINE MIR -69 199 9 4 1071 249 290 54 36 chr4 63800035 63800146 -91829974 + MLT1H LTR MaLR 82 194 -355 4 1071 921 313 23 73 chr4 63800200 63800500 -91829620 - B4 SINE B4 0 292 8 4 1071 252 333 70 28 chr4 63800649 63800791 -91829329 + MLT1H LTR MaLR 400 547 -2 4 1071 467 327 44 84 chr4 63802061 63802288 -91827832 - B4A SINE B4 -74 218 1 4 1071 275 378 62 20 chr4 63802599 63802745 -91827375 + L2a LINE L2 3017 3168 -258 4 1071 250 271 56 14 chr4 63802997 63803068 -91827052 + B4 SINE B4 2 75 -217 4 1071 387 0 0 0 chr4 63803278 63803321 -91826799 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1071 225 357 56 28 chr4 63804104 63804248 -91825872 - MIRc SINE MIR -102 166 19 4 1071 2043 268 40 11 chr4 63804884 63805958 -91824162 - Lx5 LINE L1 -5 7045 6032 4 1071 180 125 0 0 chr4 63807470 63807502 -91822618 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 4 1071 977 235 5 32 chr4 63807814 63808034 -91822086 - B3 SINE B2 -1 215 2 4 1071 428 271 37 18 chr4 63808036 63808145 -91821975 - PB1D9 SINE Alu 0 120 10 4 1071 223 122 41 0 chr4 63808413 63808462 -91821658 + GA-rich Low_complexity Low_complexity 3 53 0 4 1071 186 43 0 0 chr4 63808534 63808557 -91821563 + (TAA)n Simple_repeat Simple_repeat 1 23 0 4 1071 345 276 20 10 chr4 63809297 63809396 -91820724 + (TATG)n Simple_repeat Simple_repeat 4 103 0 4 1071 869 266 77 8 chr4 63811210 63811625 -91818495 + Lx9 LINE L1 5533 6007 -1637 4 1071 288 0 0 0 chr4 63811774 63811806 -91818314 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1071 909 316 53 92 chr4 63811870 63812432 -91817688 + Lx9 LINE L1 6438 6977 -667 4 1071 441 0 0 0 chr4 63812461 63812510 -91817610 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 4 1071 378 309 112 15 chr4 63812534 63812763 -91817357 + Lx9 LINE L1 6895 7273 -371 4 1071 268 250 17 0 chr4 63812800 63812860 -91817260 - MER20 DNA MER1_type -155 64 4 4 1071 191 204 58 58 chr4 63812861 63812913 -91817207 - L4 LINE RTE -771 1258 1207 4 1071 271 280 19 29 chr4 63813164 63813267 -91816853 + CT-rich Low_complexity Low_complexity 2 103 0 4 1071 333 275 127 9 chr4 63814288 63814398 -91815722 - MLT1H LTR MaLR -383 166 44 4 1071 285 117 0 0 chr4 63814566 63814626 -91815494 - L1Md_F2 LINE L1 0 6582 6523 4 1071 338 343 68 43 chr4 63814881 63814942 -91815178 + MER20 DNA MER1_type 2 73 -146 4 1071 204 97 0 0 chr4 63814942 63814973 -91815147 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1071 338 343 68 43 chr4 63814973 63815118 -91815002 + MER20 DNA MER1_type 74 213 -6 4 1071 238 260 208 53 chr4 63815144 63815408 -91814712 + L2a LINE L2 2372 2676 -743 4 1071 240 35 0 0 chr4 63815678 63815707 -91814413 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1071 244 330 41 33 chr4 63816464 63816586 -91813534 + L2a LINE L2 3304 3426 0 4 1071 711 281 53 45 chr4 63817065 63817330 -91812790 - B4A SINE B4 -25 267 1 4 1071 227 352 24 0 chr4 63817362 63817487 -91812633 - L1M4 LINE L1 -276 5908 5781 4 1071 545 319 0 64 chr4 63817677 63817848 -91812272 - RSINE1 SINE B4 0 165 6 4 1071 672 77 0 0 chr4 63817912 63818003 -91812117 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 4 1071 22 35 0 0 chr4 63818592 63818621 -91811499 + AT_rich Low_complexity Low_complexity 1 29 0 4 1071 207 271 26 79 chr4 63819057 63819133 -91810987 + MIR3 SINE MIR 130 201 -7 4 1071 189 0 0 0 chr4 63819595 63819616 -91810504 + (CCA)n Simple_repeat Simple_repeat 3 23 0 4 1071 319 353 12 23 chr4 63819617 63819788 -91810332 + HAL1-2a_MD LINE L1 2337 2505 -519 4 1071 26 0 0 0 chr4 63819838 63819864 -91810256 + AT_rich Low_complexity Low_complexity 1 26 0 4 1071 6055 205 49 8 chr4 63819864 63821126 -91808994 - Lx5 LINE L1 -24 7026 5713 4 1071 202 234 0 0 chr4 63821690 63821737 -91808383 + T-rich Low_complexity Low_complexity 1 47 0 4 1071 630 50 0 29 chr4 63823216 63823318 -91806802 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 4 1071 923 39 47 0 chr4 63823521 63823648 -91806472 - MusHAL1 LINE L1 -342 2370 2238 4 1071 2475 65 71 0 chr4 63823649 63823972 -91806148 + ORR1A1 LTR MaLR 1 346 0 4 1071 3090 60 29 2 chr4 63823972 63824389 -91805731 + ORR1A1-int LTR MaLR 1 428 -1364 4 1071 12603 98 18 5 chr4 63824389 63826396 -91803724 - MusHAL1 LINE L1 -587 2125 93 4 1071 753 204 134 0 chr4 63828665 63828837 -91801283 - MER20 DNA MER1_type -9 210 16 4 1071 404 289 152 28 chr4 63829731 63829909 -91800211 - MLT1D LTR MaLR -29 476 277 4 1071 504 288 6 62 chr4 63830568 63830747 -91799373 + Lx8 LINE L1 6879 7160 -484 4 1071 814 320 29 42 chr4 63830754 63831133 -91798987 + Lx9 LINE L1 6890 7263 -381 4 1071 272 65 0 42 chr4 63831184 63831232 -91798888 + (CAGAGA)n Simple_repeat Simple_repeat 4 49 0 4 1071 398 20 20 0 chr4 63831295 63831346 -91798774 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1071 22 0 0 0 chr4 63831542 63831564 -91798556 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 240 184 0 0 chr4 63831628 63831677 -91798443 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 133 4267 149 20 66 chr4 63831802 63832591 -91797529 + Lx4A LINE L1 6301 7053 -5 4 1072 200 116 0 65 chr4 63833246 63833292 -91796828 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1072 255 61 0 0 chr4 63833319 63833352 -91796768 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1072 1147 75 0 0 chr4 63833354 63833501 -91796619 - B1_Mm SINE Alu 0 147 1 4 1072 367 191 72 38 chr4 63833501 63833668 -91796452 - L1MB1 LINE L1 -11 6157 5988 4 1072 223 257 28 14 chr4 63833668 63833739 -91796381 + CT-rich Low_complexity Low_complexity 5 76 0 4 1072 262 249 12 29 chr4 63833916 63834086 -91796034 + CT-rich Low_complexity Low_complexity 2 168 0 4 1072 242 193 102 34 chr4 63834173 63834232 -91795888 - B1F SINE Alu -86 63 1 4 1072 793 277 127 50 chr4 63834233 63835015 -91795105 - L1MB1 LINE L1 -128 6040 5196 4 1072 307 211 0 0 chr4 63835123 63835180 -91794940 + Lx5 LINE L1 6224 6280 -770 4 1072 2532 181 33 20 chr4 63835197 63835822 -91794298 + Lx5 LINE L1 6339 7050 0 4 1072 346 288 99 79 chr4 63836013 63836356 -91793764 - RMER17C LTR ERVK -46 364 15 4 1072 200 34 0 33 chr4 63836852 63836882 -91793238 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 4 1072 10538 70 2 6 chr4 63838365 63840522 -91789598 - L1Md_F2 LINE L1 0 6582 4433 4 1072 13626 79 2 2 chr4 63840512 63842479 -91787641 + L1Md_F2 LINE L1 2511 4477 -1406 4 1072 605 267 62 6 chr4 63842535 63842697 -91787423 + ID_B1 SINE B4 1 171 -53 4 1072 240 272 70 97 chr4 63842621 63842735 -91787385 + PB1D10 SINE Alu 7 117 0 4 1072 196 228 157 48 chr4 63843150 63843233 -91786887 - MIR SINE MIR -108 154 63 4 1072 346 237 52 0 chr4 63843748 63843845 -91786275 + MLT1A0 LTR MaLR 258 359 -6 4 1072 434 392 7 0 chr4 63843859 63844002 -91786118 + RSINE1 SINE B4 3 146 -19 4 1072 249 33 0 0 chr4 63844004 63844034 -91786086 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1072 489 316 85 5 chr4 63844139 63844346 -91785774 - MLT1E1A LTR MaLR -66 614 372 4 1072 591 300 88 37 chr4 63845087 63845391 -91784729 - MER58B DNA MER1_type -2 339 24 4 1072 450 282 230 0 chr4 63846006 63846219 -91783901 - Lx8 LINE L1 -375 7098 6837 4 1072 343 219 131 17 chr4 63846269 63846395 -91783725 - L1MD3 LINE L1 -260 7735 7528 4 1072 238 273 50 20 chr4 63846716 63846817 -91783303 - L1MD3 LINE L1 -1042 7000 6897 4 1072 2169 85 7 3 chr4 63846853 63847148 -91782972 - L1Md_F2 LINE L1 -13 6569 6274 4 1072 757 189 24 0 chr4 63847254 63847381 -91782739 + B3 SINE B2 1 130 -86 4 1072 180 0 0 0 chr4 63847416 63847436 -91782684 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 4 1072 227 246 0 0 chr4 63847558 63847615 -91782505 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1072 200 152 0 42 chr4 63847902 63847950 -91782170 + GA-rich Low_complexity Low_complexity 3 48 0 4 1072 6325 137 8 7 chr4 63849993 63851608 -91778512 + Lx2 LINE L1 4988 6600 -397 4 1072 30497 92 3 8 chr4 63851599 63856774 -91773346 + L1Md_F2 LINE L1 446 5586 -297 4 1072 7376 75 10 2 chr4 63856775 63857749 -91772371 + L1Md_F2 LINE L1 5588 6569 -13 4 1072 2561 133 14 34 chr4 63857750 63858195 -91771925 + Lx2 LINE L1 6561 6996 -1 4 1072 1859 178 61 65 chr4 63858216 63858660 -91771460 - RMER10A LTR ERVL 0 442 1 4 1072 182 37 37 0 chr4 63858750 63858777 -91771343 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1072 661 229 64 38 chr4 63859847 63860083 -91770037 - Lx2B LINE L1 -12 6988 6747 4 1072 204 354 175 39 chr4 63860376 63860685 -91769435 + L2c LINE L2 3015 3365 -22 4 1072 263 367 56 6 chr4 63861911 63862089 -91768031 - L2c LINE L2 -40 3347 3161 4 1072 4458 175 54 1 chr4 63862869 63863630 -91766490 - RMER13A LTR ERVK -59 801 1 4 1072 1180 245 97 134 chr4 63864081 63864246 -91765874 + MTD LTR MaLR 3 120 -299 4 1072 3377 70 16 64 chr4 63864246 63864747 -91765373 - L1_Mus2 LINE L1 0 6566 6090 4 1072 1180 245 97 134 chr4 63864747 63865014 -91765106 + MTD LTR MaLR 121 419 0 4 1072 180 77 0 0 chr4 63865576 63865602 -91764518 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1072 841 83 8 0 chr4 63865602 63865722 -91764398 - B1_Mus1 SINE Alu 0 148 28 4 1072 454 268 27 34 chr4 63865722 63865749 -91764371 - ID_B1 SINE B4 -1 223 78 5 1072 22 35 0 0 chr4 63866035 63866064 -91764056 + AT_rich Low_complexity Low_complexity 1 29 0 5 1072 4689 46 0 17 chr4 63866565 63867139 -91762981 - LTRIS2 LTR ERV1 0 564 1 5 1072 1042 118 0 0 chr4 63867341 63867502 -91762618 - L1_Mus4 LINE L1 -2 6634 6474 5 1072 590 91 0 0 chr4 63867502 63867590 -91762530 + L1_Mus4 LINE L1 6290 6377 -259 5 1072 24 0 0 0 chr4 63868138 63868162 -91761958 + AT_rich Low_complexity Low_complexity 1 24 0 5 1072 306 73 0 0 chr4 63868479 63868520 -91761600 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 5 1072 223 372 59 55 chr4 63868824 63869077 -91761043 + MIRb SINE MIR 13 266 -2 5 1072 24 32 0 0 chr4 63869313 63869344 -91760776 + AT_rich Low_complexity Low_complexity 1 31 0 5 1072 28942 97 12 10 chr4 63869694 63874769 -91755351 - L1_Mus1 LINE L1 -2 6565 1425 5 1072 7739 46 2 0 chr4 63874769 63875712 -91754408 + L1Md_F2 LINE L1 5638 6582 0 5 1072 28942 151 87 12 chr4 63875712 63876724 -91753396 - L1_Mus1 LINE L1 -4459 1424 386 5 1072 491 90 13 0 chr4 63876992 63877070 -91753050 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 1072 721 176 67 30 chr4 63877211 63877375 -91752745 + URR1B DNA MER1_type 56 225 0 5 1072 194 239 0 21 chr4 63877812 63877859 -91752261 - L3 LINE CR1 -3141 1348 1303 5 1072 4878 277 11 40 chr4 63878305 63879815 -91750305 + RodERV21-int LTR ERV1 1252 2718 -2273 5 1072 339 336 68 39 chr4 63879937 63880395 -91749725 + RodERV21-int LTR ERV1 3586 4056 -3035 5 1072 262 210 0 75 chr4 63880727 63880794 -91749326 - B2_Mm2 SINE B2 -126 69 8 5 1072 857 190 74 0 chr4 63881231 63881394 -91748726 - ORR1B2 LTR MaLR -8 359 185 5 1072 361 194 42 0 chr4 63881448 63881520 -91748600 + Lx6 LINE L1 6374 6448 -1012 5 1072 630 242 67 6 chr4 63881586 63881765 -91748355 - Lx5 LINE L1 -3 7047 6858 5 1072 290 318 89 45 chr4 63881777 63881880 -91748240 - L1M2 LINE L1 -778 5365 5265 5 1072 1840 213 93 0 chr4 63881880 63882265 -91747855 - MTC LTR MaLR 0 421 1 5 1072 290 318 89 45 chr4 63882265 63882385 -91747735 - L1M2 LINE L1 -879 5264 5132 5 1072 232 314 22 44 chr4 63882443 63882533 -91747587 + MER58C DNA MER1_type 127 214 -1 5 1072 4934 42 2 0 chr4 63882701 63883296 -91746824 - L1Md_F2 LINE L1 0 6582 5987 5 1072 8818 62 14 3 chr4 63883296 63884593 -91745527 + L1Md_F2 LINE L1 4659 5975 -609 5 1072 320 300 40 10 chr4 63885149 63885250 -91744870 + ID_B1 SINE B4 87 190 -34 5 1072 210 352 68 48 chr4 63885250 63885290 -91744830 + B1F SINE Alu 6 149 0 5 1072 334 357 50 7 chr4 63885422 63885563 -91744557 - RSINE1 SINE B4 -17 148 2 5 1072 231 190 0 0 chr4 63889676 63889734 -91740386 + A-rich Low_complexity Low_complexity 1 58 0 5 1072 468 35 0 0 chr4 63890199 63890257 -91739863 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1072 759 211 0 0 chr4 63890598 63890740 -91739380 - B1_Mur4 SINE Alu 0 150 9 5 1072 229 282 173 0 chr4 63890767 63890877 -91739243 + L1M2 LINE L1 2402 2530 -4319 5 1072 648 350 31 13 chr4 63891167 63891745 -91738375 + L1_Mur3 LINE L1 2111 2699 -3148 5 1072 446 279 37 18 chr4 63891748 63891912 -91738208 + L1M2 LINE L1 5555 5721 -1124 5 1072 186 292 21 0 chr4 63892800 63892848 -91737272 - L2c LINE L2 -34 3353 3305 5 1072 259 324 46 52 chr4 63893952 63894105 -91736015 + MLT1J LTR MaLR 110 261 -251 5 1072 1755 46 0 5 chr4 63894657 63894877 -91735243 + L1Md_F3 LINE L1 6364 6582 -2 5 1072 1882 223 82 83 chr4 63895188 63895800 -91734320 + RMER19C LTR ERVK 1 611 0 5 1072 23 0 0 0 chr4 63897185 63897208 -91732912 + AT_rich Low_complexity Low_complexity 1 23 0 5 1072 286 328 177 28 chr4 63897731 63897985 -91732135 + B4A SINE B4 1 292 0 5 1072 363 183 0 0 chr4 63897986 63898068 -91732052 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1072 1412 75 27 0 chr4 63900180 63900367 -91729753 - B2_Mm2 SINE B2 -2 193 2 5 1072 635 279 100 37 chr4 63900586 63900804 -91729316 + B4 SINE B4 1 232 -60 5 1072 488 168 10 0 chr4 63900805 63900906 -91729214 + GA-rich Low_complexity Low_complexity 3 104 0 5 1072 1224 101 0 0 chr4 63900906 63901084 -91729036 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 5 1072 564 15 0 0 chr4 63901086 63901151 -91728969 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 5 1072 2037 142 61 73 chr4 63901238 63901633 -91728487 - ORR1B1 LTR MaLR -4 390 1 5 1072 383 274 117 31 chr4 63902225 63902387 -91727733 - MER58A DNA MER1_type 0 224 49 5 1072 35924 43 1 3 chr4 63903218 63909474 -91720646 - L1Md_T LINE L1 -2 6583 243 5 1072 1077 307 24 38 chr4 63909825 63910251 -91719869 + BGLII_B LTR ERVK 4 423 -18 5 1072 22 0 0 0 chr4 63910373 63910395 -91719725 + AT_rich Low_complexity Low_complexity 1 22 0 5 1072 220 364 22 22 chr4 63911113 63911203 -91718917 - MER5A DNA MER1_type -84 105 16 5 1072 250 337 63 0 chr4 63912033 63912128 -91717992 + L3b LINE CR1 54 154 -328 5 1072 246 396 67 0 chr4 63912298 63912462 -91717658 + MIRb SINE MIR 17 191 -77 5 1072 668 12 12 0 chr4 63912745 63912826 -91717294 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 1072 746 259 15 0 chr4 63912935 63913140 -91716980 - Lx5 LINE L1 0 7050 6843 5 1072 1144 274 3 0 chr4 63913495 63913787 -91716333 - Lx9 LINE L1 -807 6837 6545 5 1072 1464 173 51 12 chr4 63913791 63914125 -91715995 + Lx9 LINE L1 7298 7644 0 5 1072 276 337 78 6 chr4 63914217 63914602 -91715518 - L1MC LINE L1 -326 5798 5380 5 1072 21 23 0 64 chr4 63915079 63915126 -91714994 + AT_rich Low_complexity Low_complexity 1 44 0 5 1072 468 0 0 0 chr4 63915166 63915218 -91714902 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1072 315 0 0 0 chr4 63915218 63915252 -91714868 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1072 444 333 105 0 chr4 63915261 63915471 -91714649 - B4A SINE B4 -58 234 3 5 1072 1140 55 0 20 chr4 63916827 63916974 -91713146 - B1_Mus1 SINE Alu 0 148 5 5 1072 267 133 0 0 chr4 63917863 63917908 -91712212 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 1072 426 178 23 0 chr4 63917988 63918117 -91712003 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1072 698 319 138 8 chr4 63918383 63918775 -91711345 + Lx8 LINE L1 6477 6919 -554 5 1072 361 177 12 25 chr4 63918780 63918861 -91711259 + RMER12 LTR ERVK 757 836 -486 5 1072 387 0 0 0 chr4 63918861 63918904 -91711216 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 5 1072 752 344 14 22 chr4 63918904 63919273 -91710847 + Lx8 LINE L1 6945 7310 -163 5 1072 198 0 0 0 chr4 63919298 63919320 -91710800 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5 1072 486 236 0 0 chr4 63920019 63920163 -91709957 + (TG)n Simple_repeat Simple_repeat 2 145 0 5 1072 710 368 28 35 chr4 63920166 63920456 -91709664 - B4A SINE B4 0 292 5 5 1072 270 0 0 0 chr4 63920489 63920519 -91709601 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1072 330 302 92 33 chr4 63920541 63920661 -91709459 - B3 SINE B2 -65 128 2 5 1072 22 0 0 0 chr4 63921605 63921627 -91708493 + AT_rich Low_complexity Low_complexity 1 22 0 5 1072 1910 223 179 92 chr4 63921675 63922439 -91707681 - Lx4B LINE L1 -41 7017 6187 5 1072 341 312 6 43 chr4 63922619 63922780 -91707340 + CT-rich Low_complexity Low_complexity 5 159 0 5 1072 389 335 89 21 chr4 63923007 63923242 -91706878 + L1M5 LINE L1 5036 5286 -860 5 1072 561 292 48 5 chr4 63923651 63923837 -91706283 + B3A SINE B2 5 198 0 5 1072 272 418 64 33 chr4 63923966 63924481 -91705639 - L2 LINE L2 -1918 1501 971 5 1072 300 120 0 0 chr4 63924567 63924617 -91705503 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 1072 1625 223 72 33 chr4 63924637 63925027 -91705093 + MTD LTR MaLR 1 405 -14 5 1072 183 42 0 0 chr4 63925261 63925285 -91704835 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1072 403 347 87 15 chr4 63926697 63926893 -91703227 + MIR SINE MIR 29 238 -24 5 1072 468 0 0 0 chr4 63927843 63927895 -91702225 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1072 689 79 10 0 chr4 63927911 63928012 -91702108 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 1072 535 322 82 0 chr4 63928025 63928196 -91701924 - B4 SINE B4 -6 286 102 5 1072 2420 273 95 35 chr4 63928217 63928326 -91701794 - Lx8 LINE L1 -5 7468 7357 5 1072 801 0 0 0 chr4 63928326 63928415 -91701705 + (TTC)n Simple_repeat Simple_repeat 3 91 0 5 1072 2420 273 95 35 chr4 63928415 63929256 -91700864 - Lx8 LINE L1 -117 7356 6461 5 1072 230 246 45 30 chr4 63929256 63929323 -91700797 - B4 SINE B4 -218 74 7 5 1072 455 48 0 16 chr4 63929330 63929393 -91700727 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1072 2551 122 34 17 chr4 63929470 63929888 -91700232 - Lx LINE L1 0 6654 6230 5 1072 31 0 0 0 chr4 63929993 63930024 -91700096 + AT_rich Low_complexity Low_complexity 1 31 0 5 1072 257 320 106 69 chr4 63931356 63931590 -91698530 - MIR SINE MIR -16 252 1 5 1072 483 63 0 0 chr4 63932246 63932309 -91697811 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1072 553 253 127 0 chr4 63933122 63933288 -91696832 + LTR80B LTR ERVL 62 248 -336 5 1072 345 372 6 41 chr4 63933393 63933564 -91696556 + LTR80B LTR ERVL 419 583 -1 5 1072 191 407 88 13 chr4 63933986 63934225 -91695895 - L2 LINE L2 -514 2905 2649 5 1072 4979 73 12 3 chr4 63934449 63935120 -91695000 - L1_Mus2 LINE L1 -2 6564 5888 5 1072 24 85 0 0 chr4 63936303 63936362 -91693758 + AT_rich Low_complexity Low_complexity 1 59 0 5 1072 2491 95 34 21 chr4 63936736 63937124 -91692996 - L1_Mus4 LINE L1 -14 6622 6230 5 1072 212 0 36 0 chr4 63938484 63938512 -91691608 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1072 237 337 54 43 chr4 63939247 63939336 -91690784 - MLT1D LTR MaLR -11 494 404 5 1072 186 43 0 0 chr4 63939336 63939359 -91690761 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1072 207 0 0 0 chr4 63939359 63939382 -91690738 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 5 1072 237 337 54 43 chr4 63939382 63939477 -91690643 - MLT1D LTR MaLR -102 403 308 5 1072 495 335 42 29 chr4 63939494 63939734 -91690386 - MLT1D LTR MaLR -262 243 1 5 1072 195 403 26 0 chr4 63939789 63939866 -91690254 + MIRc SINE MIR 25 103 -165 5 1072 747 220 131 0 chr4 63940164 63940332 -91689788 + URR1A DNA MER1_type 2 191 -35 6 1072 258 273 0 68 chr4 63940231 63940349 -91689771 - CYRA11_Mm Unknown Y-chromosome -310 307 198 6 1072 2127 202 44 12 chr4 63940432 63940912 -91689208 - Lx5 LINE L1 -4 7046 6552 6 1072 262 159 0 0 chr4 63940912 63940956 -91689164 + URR1A DNA MER1_type 182 225 -1 6 1072 495 0 0 0 chr4 63942822 63942877 -91687243 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1072 3295 74 7 0 chr4 63947946 63948376 -91681744 - L1_Mus1 LINE L1 -2 6565 6133 6 1072 36149 31 0 0 chr4 63948392 63955027 -91675093 - L1Md_T LINE L1 0 6585 1 6 1072 198 0 0 0 chr4 63955467 63955489 -91674631 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 6 1072 415 316 64 54 chr4 63956541 63956745 -91673375 + MER20 DNA MER1_type 13 218 -1 6 1072 538 288 128 49 chr4 63956770 63956996 -91673124 + B4 SINE B4 1 244 -48 6 1072 708 45 0 0 chr4 63957005 63957093 -91673027 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1072 244 276 23 11 chr4 63958880 63958968 -91671152 + GA-rich Low_complexity Low_complexity 3 91 0 6 1072 3885 101 53 32 chr4 63959040 63959755 -91670365 - L1_Mur1 LINE L1 -3605 2281 1552 6 1072 1783 191 48 72 chr4 63959802 63960202 -91669918 - ORR1B1 LTR MaLR -4 390 1 6 1072 209 309 112 16 chr4 63960483 63960608 -91669512 - MIRb SINE MIR -16 252 116 6 1072 303 220 34 0 chr4 63960639 63960698 -91669422 + B3A SINE B2 24 84 -114 6 1072 346 267 98 22 chr4 63960985 63961077 -91669043 + RSINE1 SINE B4 17 115 -50 6 1072 267 233 102 17 chr4 63961362 63961480 -91668640 - Lx4B LINE L1 -4 7054 6927 6 1072 4056 199 48 5 chr4 63961497 63962376 -91667744 - Lx4B LINE L1 -266 6792 5876 6 1072 1291 159 27 19 chr4 63962384 63962647 -91667473 - L1_Mur2 LINE L1 -852 5025 4761 6 1072 633 167 281 17 chr4 63962642 63962873 -91667247 + L1_Mur2 LINE L1 3737 4028 -1849 6 1073 242 210 16 31 chr4 63963694 63963758 -91666362 + CT-rich Low_complexity Low_complexity 3 65 0 6 1073 192 179 0 0 chr4 63963859 63963898 -91666222 + A-rich Low_complexity Low_complexity 1 39 0 6 1073 253 0 0 0 chr4 63963902 63963933 -91666187 + Lx5 LINE L1 6849 6879 -171 6 1073 407 35 0 17 chr4 63963960 63964018 -91666102 + L1Md_Gf LINE L1 73 129 -6393 6 1073 297 0 0 0 chr4 63964063 63964096 -91666024 + (TAA)n Simple_repeat Simple_repeat 1 33 0 6 1073 4248 50 0 15 chr4 63964144 63964670 -91665450 - L1Md_F2 LINE L1 -14 6568 6051 6 1073 1174 296 19 34 chr4 63964840 63965006 -91665114 - Lx8 LINE L1 -145 7328 7164 6 1073 5099 54 50 1 chr4 63965006 63965672 -91664448 - L1_Mus1 LINE L1 0 6567 5870 6 1073 1174 296 19 34 chr4 63965672 63965971 -91664149 - Lx8 LINE L1 -310 7163 6870 6 1073 208 148 93 0 chr4 63965974 63966028 -91664092 + A-rich Low_complexity Low_complexity 2 60 0 6 1073 1711 295 28 2 chr4 63966028 63966602 -91663518 - Lx8 LINE L1 -615 6858 6270 6 1073 188 395 0 47 chr4 63967750 63967835 -91662285 - MIRm SINE MIR 0 276 196 6 1073 489 47 0 0 chr4 63970692 63970756 -91659364 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1073 4034 159 101 64 chr4 63970963 63971821 -91658299 + RMER19B LTR ERVK 1 890 -12 6 1073 444 280 33 33 chr4 63972098 63972279 -91657841 + MER33 DNA MER1_type 9 189 -135 6 1073 1759 182 43 3 chr4 63972361 63972713 -91657407 + Lx2 LINE L1 6632 6997 0 6 1073 247 299 6 6 chr4 63972720 63972804 -91657316 - ID4_ SINE ID -43 109 26 6 1073 349 23 0 0 chr4 63972995 63973038 -91657082 + 5S rRNA rRNA 1 43 -78 6 1073 3185 99 0 9 chr4 63973597 63974057 -91656063 - Lx LINE L1 -4 6650 6195 6 1073 222 37 0 0 chr4 63974352 63974379 -91655741 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1073 871 238 138 49 chr4 63974871 63975052 -91655068 - ORR1C2 LTR MaLR -3 381 172 6 1073 411 21 0 0 chr4 63975052 63975100 -91655020 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1073 405 0 0 0 chr4 63975100 63975144 -91654976 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1073 871 238 138 49 chr4 63975144 63975310 -91654810 - ORR1C2 LTR MaLR -213 171 3 6 1073 219 355 26 13 chr4 63975364 63975441 -91654679 - L3 LINE CR1 -82 4407 4330 6 1073 853 253 57 36 chr4 63975630 63975966 -91654154 - RLTR15 LTR ERVK -16 343 1 6 1073 1431 299 67 47 chr4 63975966 63976626 -91653494 - Lx8 LINE L1 -24 7449 6777 6 1073 343 295 18 18 chr4 63976681 63976795 -91653325 - Lx8 LINE L1 -853 6620 6507 6 1073 1019 241 142 14 chr4 63977218 63977602 -91652518 + Lx2B LINE L1 6231 6997 -3 6 1073 244 366 56 7 chr4 63977906 63978049 -91652071 - MIRb SINE MIR -99 169 20 6 1073 425 287 0 0 chr4 63978073 63978181 -91651939 - Lx8 LINE L1 -693 6780 6673 6 1073 239 237 155 50 chr4 63978304 63978504 -91651616 + Lx8 LINE L1 7248 7468 -5 6 1073 341 311 80 45 chr4 63979078 63979277 -91650843 - MLT1J1 LTR MaLR -238 206 1 6 1073 218 114 29 0 chr4 63979628 63979663 -91650457 - PB1D10 SINE Alu -10 107 72 6 1073 4479 148 45 33 chr4 63979759 63980740 -91649380 - Lx4B LINE L1 -1862 4015 3023 6 1073 9569 147 33 48 chr4 63980741 63981832 -91648288 + Lx4B LINE L1 3987 5095 -782 6 1073 1215 41 7 0 chr4 63981832 63981978 -91648142 + B1_Mm SINE Alu 1 147 0 6 1073 9569 155 29 53 chr4 63981978 63983092 -91647028 + Lx4B LINE L1 5096 6174 -884 6 1073 785 241 123 51 chr4 63983087 63983380 -91646740 + Lx4B LINE L1 6662 6975 -1 6 1073 558 325 78 68 chr4 63983694 63983988 -91646132 - MLT1A0 LTR MaLR -58 307 11 6 1073 690 312 107 0 chr4 63984006 63984269 -91645851 + MLT2C2 LTR ERVL 10 300 -164 6 1073 291 293 24 0 chr4 63984312 63984394 -91645726 + (TATG)n Simple_repeat Simple_repeat 3 86 0 6 1073 322 115 33 0 chr4 63984408 63984469 -91645651 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1073 1902 220 36 36 chr4 63984553 63984972 -91645148 + MTC LTR MaLR 3 421 0 6 1073 316 233 22 28 chr4 63987593 63987774 -91642346 + CT-rich Low_complexity Low_complexity 1 180 0 6 1073 1195 211 97 114 chr4 63988367 63988901 -91641219 - RLTR11A LTR ERVK -3 525 1 6 1073 521 260 89 52 chr4 63990170 63990361 -91639759 + B3A SINE B2 1 198 0 6 1073 2691 139 80 33 chr4 63990383 63991017 -91639103 + Lx2A LINE L1 6294 7000 0 6 1073 359 222 150 44 chr4 63991583 63991696 -91638424 - MER5A1 DNA MER1_type 0 166 42 6 1073 27 0 0 0 chr4 63991940 63991967 -91638153 + AT_rich Low_complexity Low_complexity 1 27 0 6 1073 253 179 18 0 chr4 63993691 63993747 -91636373 + L1MB8 LINE L1 5907 5963 -215 6 1073 319 229 27 45 chr4 63994584 63994694 -91635426 + URR1B DNA MER1_type 117 224 -1 6 1073 989 331 34 37 chr4 63994793 63995173 -91634947 + MTEa LTR MaLR 1 379 0 6 1073 214 229 22 51 chr4 63995324 63995450 -91634670 + A-rich Low_complexity Low_complexity 2 123 0 6 1073 999 90 20 40 chr4 63995450 63995600 -91634520 + B1_Mm SINE Alu 1 147 0 6 1073 214 229 22 51 chr4 63995600 63995611 -91634509 + A-rich Low_complexity Low_complexity 124 134 0 6 1073 339 123 24 12 chr4 63995620 63995702 -91634418 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 1073 1151 75 7 0 chr4 63996009 63996155 -91633965 + B1_Mm SINE Alu 1 147 0 6 1073 472 320 13 0 chr4 63996298 63996448 -91633672 - MER2B DNA MER2_type -21 315 164 6 1073 796 262 130 20 chr4 63996540 63996793 -91633327 - B4A SINE B4 -2 290 10 6 1073 192 40 0 0 chr4 63997526 63997551 -91632569 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 6 1073 1148 56 14 7 chr4 64000969 64001114 -91629006 + B1_Mus2 SINE Alu 2 147 0 1 1073 194 0 39 0 chr4 64001114 64001140 -91628980 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 2 1073 249 350 19 0 chr4 64003004 64003107 -91627013 - L2a LINE L2 -9 3417 3313 3 1073 267 31 0 0 chr4 64003364 64003396 -91626724 + (TTG)n Simple_repeat Simple_repeat 1 32 0 4 1073 1153 192 53 47 chr4 64003412 64003751 -91626369 + Lx5 LINE L1 6710 7050 0 5 1073 304 288 142 14 chr4 64003902 64004043 -91626077 - ORR1E LTR MaLR -105 254 96 6 1073 484 369 44 13 chr4 64004237 64004465 -91625655 - L2a LINE L2 -419 3000 2766 3 1073 647 302 31 69 chr4 64006002 64006266 -91623854 - ORR1E LTR MaLR -92 267 1 7 1073 442 306 123 41 chr4 64006553 64006822 -91623298 - Lx8 LINE L1 -92 7381 7091 8 1073 435 304 21 27 chr4 64008255 64008441 -91621679 - L1MC1 LINE L1 -20 6313 6129 9 1073 1263 108 0 0 chr4 64008751 64009229 -91620891 + (TG)n Simple_repeat Simple_repeat 1 478 0 1 1073 215 125 0 24 chr4 64009653 64009694 -91620426 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1073 570 317 57 32 chr4 64009725 64010005 -91620115 - B4A SINE B4 -2 290 4 1 1073 356 68 0 33 chr4 64010729 64010790 -91619330 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 1073 315 0 0 0 chr4 64010817 64010852 -91619268 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1073 279 0 0 0 chr4 64011474 64011505 -91618615 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1073 888 37 0 0 chr4 64011725 64011833 -91618287 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1073 395 52 17 0 chr4 64011833 64011890 -91618230 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1073 209 159 45 0 chr4 64011942 64011986 -91618134 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 1 1073 553 201 251 12 chr4 64011990 64012161 -91617959 + B3 SINE B2 1 212 -4 1 1073 1007 177 0 25 chr4 64012165 64012362 -91617758 + B2_Mm2 SINE B2 1 192 -3 2 1073 23 54 0 0 chr4 64012522 64012559 -91617561 + AT_rich Low_complexity Low_complexity 1 37 0 2 1073 586 315 30 33 chr4 64012923 64013222 -91616898 - Lx8 LINE L1 -1059 6414 6117 2 1073 1081 219 32 5 chr4 64013238 64013458 -91616662 - MTC LTR MaLR 0 421 196 2 1073 7076 77 5 7 chr4 64013458 64014651 -91615469 - L1_Mus2 LINE L1 -1 6565 5381 2 1073 983 48 0 0 chr4 64014653 64014777 -91615343 + L1Md_A LINE L1 5463 5586 -297 2 1073 8381 34 1 0 chr4 64014777 64015772 -91614348 + L1Md_A LINE L1 5587 6582 0 2 1073 15130 73 4 2 chr4 64015772 64018061 -91612059 + L1Md_F2 LINE L1 1106 3399 -2484 2 1073 7027 88 0 1 chr4 64018059 64019068 -91611052 + L1Md_F2 LINE L1 4579 5586 -297 2 1073 7939 60 0 1 chr4 64019068 64020063 -91610057 + L1Md_F2 LINE L1 5587 6580 -2 2 1073 481 178 72 36 chr4 64020064 64020175 -91609945 - MTC LTR MaLR -306 115 1 2 1073 373 327 91 12 chr4 64020198 64020452 -91609668 + Lx8 LINE L1 7191 7464 -9 2 1073 631 301 0 0 chr4 64020582 64020728 -91609392 + B1_Mur3 SINE Alu 2 147 -2 2 1073 468 252 9 19 chr4 64020909 64021014 -91609106 + PB1D10 SINE Alu 13 116 -1 2 1073 2014 129 6 58 chr4 64021095 64021440 -91608680 - ORR1A2 LTR MaLR 0 327 1 3 1073 23 54 0 0 chr4 64021699 64021736 -91608384 + AT_rich Low_complexity Low_complexity 1 37 0 3 1073 946 48 0 0 chr4 64021862 64021988 -91608132 - L1Md_T LINE L1 0 6582 6457 3 1073 446 136 12 0 chr4 64022668 64022749 -91607371 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 3 1073 36730 5 1 0 chr4 64023275 64028642 -91601478 + L1Md_A LINE L1 214 5586 -297 3 1073 9078 2 0 0 chr4 64028642 64029670 -91600450 + L1Md_A LINE L1 5587 6582 0 3 1073 1008 82 6 64 chr4 64029670 64029826 -91600294 + B1_Mus2 SINE Alu 1 147 0 3 1073 695 172 0 7 chr4 64029826 64029946 -91600174 + GA-rich Low_complexity Low_complexity 33 151 0 3 1073 224 276 0 13 chr4 64031816 64031893 -91598227 + CT-rich Low_complexity Low_complexity 3 78 0 3 1073 354 372 60 12 chr4 64032699 64032865 -91597255 - L2a LINE L2 -240 3186 3013 3 1073 561 323 15 36 chr4 64033380 64033576 -91596544 + B3A SINE B2 7 198 0 3 1073 187 341 0 0 chr4 64034340 64034384 -91595736 - L2b LINE L2 -75 3300 3257 4 1073 202 381 71 27 chr4 64034673 64034897 -91595223 + MIRb SINE MIR 17 250 -18 4 1073 560 331 126 60 chr4 64034956 64035457 -91594663 - MER34A1 LTR ERV1 -21 566 33 4 1073 931 257 40 103 chr4 64036856 64037302 -91592818 - RMER10A LTR ERVL -24 418 1 4 1073 2566 82 19 19 chr4 64037399 64037411 -91592709 - L1_Mus3 LINE L1 -9 6629 6620 4 1073 2685 64 6 11 chr4 64037411 64037759 -91592361 + ORR1A1 LTR MaLR 1 346 0 4 1073 12419 94 14 2 chr4 64037759 64039531 -91590589 + ORR1A1-int LTR MaLR 1 1792 0 4 1073 2837 52 3 0 chr4 64039531 64039876 -91590244 + ORR1A1 LTR MaLR 1 346 0 4 1073 2566 82 19 19 chr4 64039876 64040233 -91589887 - L1_Mus3 LINE L1 -19 6619 6260 4 1073 1629 93 13 0 chr4 64040584 64040821 -91589299 + L1_Mus3 LINE L1 6394 6633 -5 4 1073 389 283 27 54 chr4 64041026 64041138 -91588982 - B1_Mur2 SINE Alu 0 149 41 4 1073 8846 105 33 3 chr4 64041154 64042108 -91588012 - Lx3_Mus LINE L1 0 7009 6051 4 1073 180 0 0 0 chr4 64042108 64042128 -91587992 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 4 1073 8846 105 33 3 chr4 64042128 64042244 -91587876 - Lx3_Mus LINE L1 -959 6050 5921 4 1073 189 107 0 0 chr4 64042244 64042272 -91587848 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1073 29065 89 30 9 chr4 64042272 64043329 -91586791 - Lx3_Mus LINE L1 -1089 5920 4830 4 1073 250 24 47 23 chr4 64043329 64043372 -91586748 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1073 29065 89 30 10 chr4 64043372 64044049 -91586071 - Lx3_Mus LINE L1 -1057 4829 4183 4 1073 306 0 0 0 chr4 64044049 64044083 -91586037 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 1073 29065 89 30 10 chr4 64044083 64045358 -91584762 - Lx3_Mus LINE L1 -1704 4182 2893 4 1073 645 14 0 0 chr4 64045358 64045432 -91584688 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 5 1073 29065 96 59 8 chr4 64045432 64047451 -91582669 - Lx3_Mus LINE L1 -2994 2892 716 4 1073 834 113 0 0 chr4 64047698 64047831 -91582289 + (GAA)n Simple_repeat Simple_repeat 3 135 0 5 1073 563 60 12 0 chr4 64047831 64047915 -91582205 + (CAA)n Simple_repeat Simple_repeat 1 85 0 5 1073 315 325 0 0 chr4 64048375 64048458 -91581662 + T-rich Low_complexity Low_complexity 40 122 0 5 1073 360 123 0 0 chr4 64048459 64048532 -91581588 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1073 234 333 176 7 chr4 64048605 64048753 -91581367 + MamRep605 Unknown Unknown 397 569 -307 5 1073 24 32 0 0 chr4 64048872 64048903 -91581217 + AT_rich Low_complexity Low_complexity 1 31 0 5 1073 486 33 0 0 chr4 64049218 64049278 -91580842 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1073 201 18 123 18 chr4 64049382 64049439 -91580681 + (GTTTG)n Simple_repeat Simple_repeat 3 65 0 6 1073 432 0 0 0 chr4 64049439 64049487 -91580633 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1073 243 355 13 0 chr4 64049880 64049956 -91580164 - MIR3 SINE MIR -50 158 82 6 1073 917 184 81 63 chr4 64050571 64050792 -91579328 - URR1A DNA MER1_type -1 225 1 6 1073 387 0 0 0 chr4 64051106 64051149 -91578971 + (TAA)n Simple_repeat Simple_repeat 1 43 0 6 1073 1120 95 0 0 chr4 64051218 64051365 -91578755 - B1_Mm SINE Alu 0 147 1 6 1073 1383 18 0 0 chr4 64051442 64051609 -91578511 + L1Md_F2 LINE L1 6415 6581 -1 6 1073 248 336 49 57 chr4 64052034 64052157 -91577963 - B1F2 SINE Alu -1 148 27 6 1073 909 28 0 0 chr4 64052332 64052440 -91577680 + (GGAGA)n Simple_repeat Simple_repeat 3 110 0 6 1073 23 54 0 0 chr4 64052478 64052515 -91577605 + AT_rich Low_complexity Low_complexity 1 37 0 7 1073 422 324 109 59 chr4 64052594 64052814 -91577306 - ORR1D2 LTR MaLR -127 243 13 7 1073 225 0 0 0 chr4 64053003 64053028 -91577092 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1073 8088 25 3 1 chr4 64053430 64054878 -91575242 - L1Md_T LINE L1 -1 6581 5131 7 1073 364 234 87 19 chr4 64054967 64055130 -91574990 + L1M2 LINE L1 2443 2597 -4252 7 1073 762 60 0 0 chr4 64055553 64055653 -91574467 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 7 1073 298 294 174 0 chr4 64055654 64055763 -91574357 + MLT1B LTR MaLR 256 383 -7 7 1073 659 324 20 8 chr4 64056342 64056594 -91573526 - Lx6 LINE L1 -27 7433 7179 7 1073 1100 84 0 0 chr4 64056679 64056821 -91573299 + B1_Mus1 SINE Alu 1 142 -6 7 1073 477 0 0 0 chr4 64056829 64056882 -91573238 + (TAA)n Simple_repeat Simple_repeat 2 54 0 7 1073 6016 155 51 17 chr4 64057032 64058099 -91572021 + RLTR25A LTR ERVK 1 1103 0 8 1073 543 259 26 26 chr4 64058254 64058390 -91571730 - B1F SINE Alu -13 136 1 8 1073 234 333 0 0 chr4 64058725 64058800 -91571320 - ID4_ SINE ID -5 78 4 8 1073 186 300 182 0 chr4 64058877 64058987 -91571133 + MIRb SINE MIR 123 252 -16 8 1073 301 342 65 46 chr4 64060411 64060807 -91569313 - Kanga11a DNA Tc2 -211 759 338 8 1073 975 157 18 0 chr4 64061280 64061446 -91568674 + URR1A DNA MER1_type 58 226 0 8 1073 31 44 0 0 chr4 64061608 64061653 -91568467 + AT_rich Low_complexity Low_complexity 1 45 0 8 1073 733 170 0 24 chr4 64062068 64062274 -91567846 + (TA)n Simple_repeat Simple_repeat 1 201 0 8 1073 601 301 73 62 chr4 64062281 64062734 -91567386 - Lx9 LINE L1 -370 7274 6817 8 1073 208 242 16 16 chr4 64062827 64062890 -91567230 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1073 333 0 0 0 chr4 64062960 64062997 -91567123 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1073 462 183 0 0 chr4 64062997 64063117 -91567003 + GA-rich Low_complexity Low_complexity 1 120 0 9 1073 2357 235 32 24 chr4 64064878 64065471 -91564649 - Lx6 LINE L1 -794 6666 6069 9 1073 2445 226 49 26 chr4 64065484 64066139 -91563981 + Lx7 LINE L1 6685 7354 -342 9 1073 507 17 0 0 chr4 64066284 64066344 -91563776 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1073 1061 91 7 0 chr4 64067705 64067848 -91562272 + B1_Mus1 SINE Alu 5 148 0 9 1073 199 87 65 0 chr4 64067848 64067894 -91562226 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 9 1073 205 146 35 35 chr4 64067965 64068022 -91562098 + A-rich Low_complexity Low_complexity 4 60 0 9 1073 461 58 0 14 chr4 64068045 64068115 -91562005 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 1073 687 308 45 25 chr4 64068598 64068841 -91561279 - B4A SINE B4 -44 248 1 9 1073 21 0 0 0 chr4 64069485 64069506 -91560614 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 197 387 10 0 chr4 64069615 64069727 -91560393 - MIR SINE MIR -106 156 51 1 1073 375 23 0 0 chr4 64071608 64071652 -91558468 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1073 2874 167 40 11 chr4 64071954 64072522 -91557598 - L1_Mur2 LINE L1 -680 5197 4613 1 1073 2970 182 53 4 chr4 64072524 64073075 -91557045 + Lx4B LINE L1 6470 7047 -11 1 1073 6219 13 11 0 chr4 64073164 64073911 -91556209 - L1Md_T LINE L1 -196 5687 4933 1 1073 7722 27 0 0 chr4 64073914 64074807 -91555313 + L1Md_T LINE L1 5690 6582 0 1 1073 1138 44 12 36 chr4 64077168 64077334 -91552786 - L1Md_F2 LINE L1 0 6584 6423 1 1073 4022 23 0 0 chr4 64077334 64077817 -91552303 - L1Md_F2 LINE L1 -512 6070 5588 1 1073 1096 68 0 39 chr4 64077860 64078014 -91552106 - B1_Mus1 SINE Alu 0 148 1 1 1073 688 131 8 0 chr4 64078017 64078139 -91551981 - L1_Mm LINE L1 -585 5298 5176 1 1073 251 320 64 7 chr4 64078430 64078713 -91551407 - L1MDa LINE L1 -2543 3994 3696 1 1073 280 303 168 23 chr4 64078753 64079320 -91550800 - L1MDa LINE L1 -3089 3448 2800 1 1073 240 273 30 0 chr4 64079491 64079557 -91550563 + G-rich Low_complexity Low_complexity 6 73 0 1 1073 263 312 23 23 chr4 64080024 64080152 -91549968 - L1MDa LINE L1 -6268 365 238 1 1073 21 36 0 0 chr4 64080345 64080373 -91549747 + AT_rich Low_complexity Low_complexity 1 28 0 1 1073 226 383 73 19 chr4 64080759 64080964 -91549156 + L3 LINE CR1 4160 4375 -114 1 1073 36322 31 0 0 chr4 64081511 64087951 -91542169 - L1Md_T LINE L1 0 6585 48 1 1073 429 20 0 0 chr4 64088420 64088470 -91541650 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1073 482 45 0 0 chr4 64089764 64089831 -91540289 + L1_Mus1 LINE L1 6500 6566 -1 1 1073 1050 110 7 0 chr4 64090727 64090872 -91539248 + B1_Mus1 SINE Alu 2 147 -1 1 1073 699 273 75 0 chr4 64091281 64091442 -91538678 - B3A SINE B2 -24 174 2 1 1073 468 0 0 0 chr4 64091622 64091674 -91538446 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1073 246 325 78 0 chr4 64091675 64091752 -91538368 - ID_B1 SINE B4 -8 216 134 1 1073 619 268 14 7 chr4 64091759 64091898 -91538222 - B1_Mur3 SINE Alu -9 140 1 1 1073 271 327 51 73 chr4 64091898 64091974 -91538146 - MT2B LTR ERVL -446 155 84 1 1073 1044 302 66 66 chr4 64092181 64092681 -91537439 + MLT1D LTR MaLR 4 503 -2 1 1074 850 135 346 25 chr4 64094358 64094557 -91535563 + ORR1A4 LTR MaLR 3 265 -64 1 1074 324 0 0 0 chr4 64094558 64094594 -91535526 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1074 444 19 0 0 chr4 64094594 64094646 -91535474 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1074 254 386 33 58 chr4 64094877 64094998 -91535122 + B1F1 SINE Alu 1 118 -31 1 1074 279 0 0 0 chr4 64095103 64095134 -91534986 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1074 228 294 27 164 chr4 64095752 64095793 -91534327 + Charlie5 DNA MER1_type 2364 2394 -230 1 1074 625 249 73 24 chr4 64095793 64095999 -91534121 + B3 SINE B2 1 216 0 1 1074 228 294 27 164 chr4 64095999 64096250 -91533870 + Charlie5 DNA MER1_type 2395 2616 -8 1 1074 317 375 92 4 chr4 64096360 64096641 -91533479 - L2 LINE L2 -884 2535 2230 1 1074 441 0 0 0 chr4 64096726 64096775 -91533345 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1074 284 276 0 39 chr4 64097584 64097686 -91532434 + GA-rich Low_complexity Low_complexity 2 99 0 1 1074 617 342 30 42 chr4 64097689 64098019 -91532101 + MLT1D LTR MaLR 180 505 0 1 1074 1090 94 0 0 chr4 64098091 64098229 -91531891 + B1_Mus2 SINE Alu 2 139 -8 1 1074 423 0 0 0 chr4 64098229 64098276 -91531844 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1074 396 0 0 0 chr4 64100250 64100294 -91529826 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1074 243 88 0 0 chr4 64100298 64100332 -91529788 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1074 396 0 0 0 chr4 64100420 64100464 -91529656 + (TATG)n Simple_repeat Simple_repeat 4 47 0 1 1074 276 30 0 0 chr4 64100875 64100908 -91529212 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1074 744 12 0 0 chr4 64100908 64100992 -91529128 + (GA)n Simple_repeat Simple_repeat 1 85 0 1 1074 513 47 0 0 chr4 64103712 64103776 -91526344 + (TATG)n Simple_repeat Simple_repeat 1 64 0 1 1074 3093 240 97 79 chr4 64103781 64104225 -91525895 - Lx9 LINE L1 -234 7410 6906 1 1074 246 32 0 0 chr4 64104225 64104256 -91525864 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1074 897 37 0 0 chr4 64104257 64104366 -91525754 + (GA)n Simple_repeat Simple_repeat 2 110 0 1 1074 3093 240 97 79 chr4 64104366 64104725 -91525395 - Lx9 LINE L1 -739 6905 6545 1 1074 235 167 0 0 chr4 64104725 64104767 -91525353 + 4.5SRNA scRNA scRNA 1 42 -52 1 1074 3093 240 97 79 chr4 64104767 64105140 -91524980 - Lx9 LINE L1 -739 6544 6168 1 1074 358 254 25 17 chr4 64105182 64105302 -91524818 + Lx9 LINE L1 4864 4984 -863 1 1074 705 144 0 0 chr4 64105302 64105420 -91524700 + (GA)n Simple_repeat Simple_repeat 1 118 0 1 1074 1060 58 51 0 chr4 64105490 64105628 -91524492 + B1_Mus2 SINE Alu 1 145 -2 1 1074 225 65 0 0 chr4 64105628 64105659 -91524461 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1074 369 231 0 11 chr4 64105675 64105767 -91524353 + Lx9 LINE L1 5051 5141 -706 1 1074 740 281 170 12 chr4 64106362 64106603 -91523517 + RMER1A Other Other 162 440 -590 1 1074 347 332 50 42 chr4 64106912 64107151 -91522969 - RLTR15 LTR ERVK -15 344 104 1 1074 850 219 73 36 chr4 64107045 64107266 -91522854 + ORR1C1 LTR MaLR 141 378 0 1 1074 915 271 46 74 chr4 64107266 64107701 -91522419 + Lx9 LINE L1 5603 6025 -1619 1 1074 244 246 15 30 chr4 64108334 64108401 -91521719 - B4A SINE B4 0 292 227 1 1074 267 293 60 75 chr4 64108436 64108569 -91521551 - B4A SINE B4 -151 141 11 1 1074 24 32 0 0 chr4 64108894 64108925 -91521195 + AT_rich Low_complexity Low_complexity 1 31 0 1 1074 222 118 0 0 chr4 64109308 64109342 -91520778 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 1074 245 140 0 91 chr4 64109344 64109399 -91520721 + MT2B2 LTR ERVL 535 584 0 1 1074 386 284 0 11 chr4 64109399 64109475 -91520645 - B4A SINE B4 -213 79 5 1 1074 740 184 7 29 chr4 64110150 64110272 -91519848 + B1_Mus1 SINE Alu 11 132 -16 1 1074 276 30 0 0 chr4 64110272 64110305 -91519815 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1074 740 184 7 29 chr4 64110305 64110322 -91519798 + B1_Mus1 SINE Alu 133 146 -2 1 1074 22 35 0 0 chr4 64114326 64114355 -91515765 + AT_rich Low_complexity Low_complexity 1 29 0 1 1074 255 361 72 0 chr4 64114356 64114453 -91515667 - MIR3 SINE MIR -24 184 81 1 1074 771 138 0 0 chr4 64114612 64114750 -91515370 + (CA)n Simple_repeat Simple_repeat 2 139 0 1 1074 537 30 0 0 chr4 64114750 64114817 -91515303 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1074 33776 36 1 0 chr4 64115608 64121908 -91508212 + L1Md_T LINE L1 1 5589 -297 1 1074 9056 4 0 0 chr4 64121908 64122904 -91507216 + L1Md_T LINE L1 5590 6585 0 1 1074 515 251 116 146 chr4 64123679 64123888 -91506232 - RLTR21 LTR ERVK 0 1404 1224 1 1074 321 26 0 0 chr4 64123888 64123926 -91506194 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1074 1446 191 39 32 chr4 64123926 64124287 -91505833 - RLTR21 LTR ERVK -181 1223 735 1 1074 33823 68 6 9 chr4 64124287 64130433 -91499687 - L1Md_F3 LINE L1 -20 6564 441 1 1074 904 140 310 13 chr4 64130438 64130670 -91499450 - RLTR21 LTR ERVK -812 760 460 1 1074 1190 55 43 0 chr4 64130670 64130833 -91499287 - L1_Mus2 LINE L1 -422 6144 5975 1 1074 3037 79 0 48 chr4 64130833 64131272 -91498848 + L1_Mus2 LINE L1 6149 6566 0 1 1074 207 100 0 0 chr4 64131345 64131375 -91498745 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1074 2605 218 4 2 chr4 64131375 64131849 -91498271 - RLTR21 LTR ERVK -1097 475 1 1 1074 206 372 26 26 chr4 64131889 64132005 -91498115 + MIRm SINE MIR 30 145 -131 1 1074 1077 248 52 56 chr4 64132518 64133005 -91497115 + Lx6 LINE L1 5809 6346 -704 1 1074 921 315 52 35 chr4 64133020 64133389 -91496731 + Lx6 LINE L1 6480 6854 -196 1 1074 4546 137 25 11 chr4 64134064 64134796 -91495324 - Lx LINE L1 -6 6648 5907 1 1074 1821 57 0 16 chr4 64134797 64135047 -91495073 + Lx LINE L1 5628 5873 -781 1 1074 329 316 0 45 chr4 64135300 64135456 -91494664 + CT-rich Low_complexity Low_complexity 1 149 0 1 1074 6548 38 0 5 chr4 64136351 64137142 -91492978 - L1Md_F3 LINE L1 -15 6569 5783 1 1074 7796 29 0 0 chr4 64137142 64138095 -91492025 - L1Md_A LINE L1 -6 6576 5624 1 1074 5287 23 12 0 chr4 64138093 64138745 -91491375 + L1Md_A LINE L1 4956 5615 -268 1 1074 1361 18 6 0 chr4 64138743 64138910 -91491210 - L1Md_F3 LINE L1 -786 5798 5631 1 1074 26 50 0 0 chr4 64139907 64139947 -91490173 + AT_rich Low_complexity Low_complexity 1 40 0 1 1074 821 251 93 11 chr4 64140038 64140320 -91489800 - Lx2B LINE L1 0 7000 6668 1 1074 306 125 0 0 chr4 64140612 64140660 -91489460 + (TCC)n Simple_repeat Simple_repeat 2 49 0 1 1074 388 298 76 65 chr4 64141173 64141514 -91488606 + L1M5 LINE L1 4484 4828 -1318 1 1074 306 50 0 0 chr4 64141699 64141739 -91488381 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1074 719 144 8 0 chr4 64141739 64141865 -91488255 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1074 402 343 9 0 chr4 64142306 64142411 -91487709 + RSINE1 SINE B4 2 107 -58 1 1074 202 341 22 0 chr4 64143244 64143335 -91486785 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 1 1074 728 291 96 45 chr4 64143353 64143506 -91486614 - MLT1A0 LTR MaLR -4 361 208 1 1074 1075 107 7 5 chr4 64143506 64143921 -91486199 + (CA)n Simple_repeat Simple_repeat 1 416 0 1 1074 728 291 96 45 chr4 64143921 64144098 -91486022 - MLT1A0 LTR MaLR -158 207 10 1 1074 200 280 128 11 chr4 64144523 64144617 -91485503 + L2a LINE L2 3322 3426 0 1 1074 238 179 0 10 chr4 64145262 64145332 -91484788 + L1MB1 LINE L1 6118 6185 -4 1 1074 3256 177 19 0 chr4 64145849 64146486 -91483634 - L1_Mm LINE L1 -349 5534 4886 1 1074 6789 92 26 9 chr4 64146475 64147554 -91482566 + L1_Mus4 LINE L1 5540 6635 -1 1 1074 364 365 83 9 chr4 64147868 64148084 -91482036 + Tigger11a DNA MER2_type 111 342 -393 1 1074 293 272 47 28 chr4 64148113 64148219 -91481901 + Tigger11a DNA MER2_type 321 428 -307 1 1074 361 355 67 30 chr4 64148332 64148602 -91481518 - L1ME3A LINE L1 -20 6153 5874 1 1074 192 77 0 0 chr4 64148683 64148709 -91481411 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1074 332 328 16 8 chr4 64148937 64149063 -91481057 + CT-rich Low_complexity Low_complexity 1 127 0 1 1074 675 87 0 0 chr4 64149173 64149277 -91480843 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1074 508 138 39 0 chr4 64150211 64150341 -91479779 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 1 1074 181 298 81 23 chr4 64151236 64151322 -91478798 - L2c LINE L2 -193 3194 3104 1 1074 2534 78 0 0 chr4 64151943 64152274 -91477846 - L1_Mus1 LINE L1 0 6567 6237 1 1074 1502 39 0 0 chr4 64152274 64152455 -91477665 + L1_Mus1 LINE L1 6046 6226 -341 1 1074 350 159 21 21 chr4 64152455 64152551 -91477569 - L1_Mus3 LINE L1 -30 6608 6513 1 1074 22 35 0 0 chr4 64153012 64153041 -91477079 + AT_rich Low_complexity Low_complexity 1 29 0 1 1074 203 361 56 0 chr4 64153475 64153547 -91476573 + MIR SINE MIR 27 102 -106 2 1074 23 0 0 0 chr4 64154159 64154182 -91475938 + AT_rich Low_complexity Low_complexity 1 23 0 2 1074 182 345 0 0 chr4 64154316 64154371 -91475749 - MIR SINE MIR -66 142 88 2 1074 274 260 10 39 chr4 64155359 64155463 -91474657 + CT-rich Low_complexity Low_complexity 2 102 0 2 1074 478 217 76 0 chr4 64155636 64155728 -91474392 + B1_Mur1 SINE Alu 30 128 -21 2 1074 27 62 0 0 chr4 64156729 64156777 -91473343 + AT_rich Low_complexity Low_complexity 1 48 0 2 1074 1059 257 87 87 chr4 64157078 64157457 -91472663 + MTEb LTR MaLR 1 379 0 2 1074 440 99 0 14 chr4 64157701 64157773 -91472347 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1074 304 333 11 21 chr4 64157800 64157895 -91472225 + PB1D10 SINE Alu 22 115 -2 2 1074 28 29 0 0 chr4 64158641 64158676 -91471444 + AT_rich Low_complexity Low_complexity 1 35 0 2 1074 1287 147 6 0 chr4 64158708 64159112 -91471008 - SYNREP_MM Satellite Satellite -165 406 1 2 1074 349 174 0 5 chr4 64159104 64159171 -91470949 - Lx6 LINE L1 -1080 6616 6546 2 1074 267 31 0 0 chr4 64159227 64159259 -91470861 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1074 180 226 0 0 chr4 64159312 64159374 -91470746 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1074 216 0 0 0 chr4 64159404 64159428 -91470692 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1074 269 286 24 0 chr4 64159461 64159545 -91470575 - Lx7 LINE L1 -423 7273 7188 2 1074 302 0 0 26 chr4 64159588 64159627 -91470493 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2 1074 2442 245 58 54 chr4 64159636 64160373 -91469747 - Lx6 LINE L1 -175 7285 6546 2 1074 659 314 18 14 chr4 64160395 64160611 -91469509 - B3A SINE B2 0 216 1 2 1074 4117 99 17 0 chr4 64160799 64161373 -91468747 + MT2B2 LTR ERVL 1 584 0 2 1074 234 374 29 41 chr4 64161632 64161802 -91468318 - MIRb SINE MIR -96 172 5 2 1074 823 188 92 20 chr4 64163094 64163290 -91466830 - B3 SINE B2 -4 212 3 2 1074 436 126 49 69 chr4 64164164 64164246 -91465874 + Lx3A LINE L1 6882 6966 -15 2 1074 291 28 0 0 chr4 64164246 64164282 -91465838 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 1074 436 126 49 69 chr4 64164282 64164301 -91465819 + Lx3A LINE L1 6967 6981 0 2 1074 475 276 47 87 chr4 64165400 64165698 -91464422 - RLTR15 LTR ERVK -73 286 1 2 1074 2194 191 145 33 chr4 64165700 64166782 -91463338 - MYSERV6-int LTR ERVK -2 8957 7755 2 1074 881 236 20 16 chr4 64166782 64166951 -91463169 + Lx6 LINE L1 6518 6645 -815 2 1074 1552 163 43 7 chr4 64166951 64167253 -91462867 + Lx2 LINE L1 6684 6996 -1 2 1074 988 266 47 82 chr4 64167253 64167268 -91462852 + Lx6 LINE L1 6646 6652 -808 2 1074 645 14 0 0 chr4 64167268 64167342 -91462778 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 1074 1589 272 145 45 chr4 64167342 64168051 -91462069 + Lx6 LINE L1 6653 7439 -21 2 1074 2466 284 28 30 chr4 64168032 64168785 -91461335 - Lx6 LINE L1 -672 6788 6038 2 1074 1975 201 19 26 chr4 64168798 64169266 -91460854 + Lx6 LINE L1 5544 6014 -1446 2 1074 268 213 40 0 chr4 64169341 64169416 -91460704 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 2 1074 301 289 0 62 chr4 64169554 64169650 -91460470 - MER20 DNA MER1_type -34 185 96 2 1074 599 321 16 11 chr4 64169824 64170013 -91460107 + B3A SINE B2 1 190 -8 2 1074 33 25 0 0 chr4 64170060 64170100 -91460020 + AT_rich Low_complexity Low_complexity 1 40 0 2 1074 450 0 0 0 chr4 64170250 64170300 -91459820 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1074 287 362 0 49 chr4 64170659 64170781 -91459339 - MER20 DNA MER1_type -1 218 103 2 1074 601 317 108 0 chr4 64170839 64171105 -91459015 + RMER1A Other Other 1 337 -693 2 1074 1109 215 94 92 chr4 64171122 64171198 -91458922 - RLTR11A LTR ERVK -3 525 457 2 1074 387 41 0 0 chr4 64171198 64171247 -91458873 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1074 1109 215 94 92 chr4 64171247 64171304 -91458816 - RLTR11A LTR ERVK -72 456 385 2 1074 5273 116 38 5 chr4 64171304 64172091 -91458029 + Lx LINE L1 5837 6649 -5 2 1074 1109 215 94 92 chr4 64172091 64172257 -91457863 - RLTR11A LTR ERVK -144 384 225 2 1074 1002 41 0 0 chr4 64172257 64172380 -91457740 + (TC)n Simple_repeat Simple_repeat 2 124 0 2 1074 1109 234 80 78 chr4 64172380 64172519 -91457601 - RLTR11A LTR ERVK -304 224 65 2 1074 658 198 19 19 chr4 64172813 64172973 -91457147 + Lx6 LINE L1 6813 6972 -1 2 1074 183 391 58 26 chr4 64173265 64173454 -91456666 - MIR SINE MIR -39 223 29 2 1074 906 81 0 0 chr4 64173743 64173867 -91456253 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 2 1074 6090 63 4 16 chr4 64173902 64174718 -91455402 - L1Md_F2 LINE L1 -10 6572 5767 2 1074 207 0 0 0 chr4 64175198 64175221 -91454899 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1074 383 391 54 17 chr4 64175885 64176179 -91453941 - L1MC4a LINE L1 -462 7420 7116 2 1074 5266 94 20 24 chr4 64176194 64176997 -91453123 + L1_Mus3 LINE L1 5831 6630 -8 2 1074 556 299 153 20 chr4 64177720 64177969 -91452151 + Lx8 LINE L1 7108 7389 -84 2 1074 333 0 0 0 chr4 64178003 64178040 -91452080 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1074 297 0 0 0 chr4 64178040 64178072 -91452048 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1074 307 245 177 10 chr4 64178080 64178278 -91451842 + L1M4 LINE L1 4478 4708 -1438 2 1074 294 267 0 28 chr4 64178726 64178834 -91451286 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 2 1074 585 304 20 28 chr4 64178834 64179081 -91451039 - MER2 DNA MER2_type -26 319 75 2 1074 516 16 0 0 chr4 64179715 64179776 -91450344 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 2 1074 527 243 94 73 chr4 64179853 64180006 -91450114 + B3A SINE B2 1 151 -44 2 1074 444 99 0 0 chr4 64180006 64180077 -91450043 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1074 392 243 94 73 chr4 64180077 64180114 -91450006 + B2_Mm2 SINE B2 152 194 -1 2 1074 490 314 94 52 chr4 64180241 64180644 -91449476 - L1M5 LINE L1 -2022 4124 3705 2 1074 623 240 14 7 chr4 64180749 64180896 -91449224 + B1_Mus1 SINE Alu 1 148 0 2 1074 234 0 0 0 chr4 64180905 64180931 -91449189 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2 1074 902 270 5 38 chr4 64180984 64181196 -91448924 + B3 SINE B2 5 209 -7 2 1074 372 94 0 0 chr4 64181901 64181954 -91448166 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1074 1123 62 7 7 chr4 64181966 64182113 -91448007 + B1_Mm SINE Alu 1 147 0 2 1074 309 0 98 0 chr4 64182114 64182175 -91447945 + (CAAAA)n Simple_repeat Simple_repeat 3 69 0 2 1074 331 322 35 14 chr4 64183713 64183858 -91446262 + RSINE1 SINE B4 2 149 -16 2 1074 258 56 0 0 chr4 64183866 64183902 -91446218 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1074 345 24 0 0 chr4 64184481 64184523 -91445597 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1074 316 264 134 40 chr4 64184530 64184731 -91445389 + L1M5 LINE L1 2668 2887 -3259 2 1074 285 278 191 53 chr4 64184793 64184945 -91445175 - MTD LTR MaLR 0 419 247 2 1074 4195 187 56 66 chr4 64185026 64185930 -91444190 - RMER19B LTR ERVK -7 895 1 2 1074 237 238 16 0 chr4 64186170 64186233 -91443887 - Lx9 LINE L1 -22 7622 7559 2 1074 2916 53 5 21 chr4 64186244 64186627 -91443493 + L1Md_F2 LINE L1 5209 5585 -298 2 1074 7602 68 3 17 chr4 64186628 64187637 -91442483 + L1Md_F2 LINE L1 5587 6581 -1 2 1074 1016 238 56 64 chr4 64187644 64188053 -91442067 + ORR1C2 LTR MaLR 13 394 0 2 1074 200 122 24 0 chr4 64188118 64188159 -91441961 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1074 225 256 67 17 chr4 64188498 64188617 -91441503 + Lx9 LINE L1 7518 7642 -2 2 1074 1432 331 88 31 chr4 64188633 64189417 -91440703 + MLT1J2-int LTR MaLR 284 1112 -275 2 1074 827 290 5 5 chr4 64189575 64189797 -91440323 + ID_B1 SINE B4 2 223 -1 2 1074 474 381 63 7 chr4 64189939 64190209 -91439911 + MLT1J2 LTR MaLR 138 422 -26 2 1074 1319 6 0 62 chr4 64190784 64190976 -91439144 + (CAAG)n Simple_repeat Simple_repeat 1 180 0 2 1074 355 87 14 42 chr4 64191660 64191732 -91438388 - L1_Mus3 LINE L1 -5 6633 6564 2 1074 399 222 32 43 chr4 64192734 64192828 -91437292 + B4 SINE B4 2 94 -198 2 1074 275 268 44 18 chr4 64192857 64192971 -91437149 + Lx9 LINE L1 7386 7502 -142 2 1074 668 325 24 10 chr4 64193033 64193241 -91436879 + B4 SINE B4 82 292 0 2 1074 3748 62 2 22 chr4 64193531 64194030 -91436090 + L1_Mus2 LINE L1 6078 6566 0 2 1074 185 0 40 0 chr4 64194335 64194360 -91435760 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1074 211 303 32 53 chr4 64194982 64195076 -91435044 + PB1D7 SINE Alu 18 109 -11 2 1074 236 53 26 0 chr4 64195076 64195114 -91435006 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1074 492 322 80 0 chr4 64195763 64195962 -91434158 - ID_B1 SINE B4 -9 215 1 2 1074 185 390 20 0 chr4 64195992 64196092 -91434028 + L2c LINE L2 3243 3344 -43 2 1074 402 298 146 0 chr4 64196577 64196728 -91433392 - MIR3 SINE MIR -24 184 12 2 1074 208 274 0 0 chr4 64197308 64197359 -91432761 + T-rich Low_complexity Low_complexity 1 51 0 2 1074 396 0 0 0 chr4 64197967 64198011 -91432109 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1074 435 423 62 29 chr4 64200206 64200479 -91429641 + B4A SINE B4 7 288 -4 2 1074 208 259 0 33 chr4 64201714 64201774 -91428346 + L3 LINE CR1 3308 3365 -1124 2 1074 3491 62 13 7 chr4 64202194 64202649 -91427471 + L1Md_F2 LINE L1 6102 6559 -23 2 1074 190 152 62 42 chr4 64204375 64204423 -91425697 - L3 LINE CR1 -1103 3386 3338 2 1074 188 184 0 20 chr4 64204451 64204501 -91425619 + GA-rich Low_complexity Low_complexity 3 51 0 2 1074 320 298 43 26 chr4 64205102 64205219 -91424901 + MTEa LTR MaLR 259 377 -2 2 1074 253 295 38 13 chr4 64205221 64205300 -91424820 - MLT1E LTR MaLR -377 276 196 2 1074 318 298 43 26 chr4 64206559 64206676 -91423444 - MTEa LTR MaLR -2 377 259 2 1074 252 327 198 48 chr4 64206933 64207100 -91423020 + MLT1E3 LTR MaLR 358 549 -75 2 1074 24 0 0 0 chr4 64207126 64207150 -91422970 + AT_rich Low_complexity Low_complexity 1 24 0 2 1074 332 373 19 25 chr4 64207175 64207332 -91422788 - RSINE1 SINE B4 -7 158 3 2 1074 495 371 53 19 chr4 64207487 64207693 -91422427 + MLT1K LTR MaLR 223 435 -160 3 1074 242 338 14 0 chr4 64208148 64208219 -91421901 - MIRb SINE MIR -171 97 26 3 1074 654 313 40 50 chr4 64209235 64209659 -91420461 - L1MC3 LINE L1 -21 7764 7345 3 1074 516 93 0 0 chr4 64210147 64210222 -91419898 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1074 315 262 76 19 chr4 64210351 64210456 -91419664 - L1M1 LINE L1 -628 5672 5562 3 1074 240 307 88 65 chr4 64210459 64210766 -91419354 + L1MA9 LINE L1 5938 6251 -61 3 1074 293 47 23 0 chr4 64211055 64211098 -91419022 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 3 1074 246 128 0 0 chr4 64211218 64211257 -91418863 + (CAT)n Simple_repeat Simple_repeat 3 41 0 3 1074 180 0 0 0 chr4 64211354 64211374 -91418746 + (TTC)n Simple_repeat Simple_repeat 2 21 0 3 1074 3728 43 13 6 chr4 64211374 64211842 -91418278 - L1Md_F3 LINE L1 -14 6570 6100 3 1074 11865 65 12 0 chr4 64212626 64214176 -91415944 - L1Md_F2 LINE L1 -638 5245 3677 3 1074 2591 47 3 0 chr4 64214170 64214487 -91415633 + L1Md_F2 LINE L1 5268 5585 -298 3 1074 8248 41 1 1 chr4 64214488 64215484 -91414636 + L1Md_F2 LINE L1 5587 6582 0 3 1074 219 282 73 37 chr4 64215961 64216097 -91414023 - MIR SINE MIR 0 262 122 3 1074 221 253 40 139 chr4 64217326 64217427 -91412693 + L2c LINE L2 3286 3376 -11 3 1074 1389 271 34 12 chr4 64219856 64220178 -91409942 - Lx5 LINE L1 -88 6962 6634 3 1074 4248 199 78 56 chr4 64220177 64220780 -91409340 - L1_Mur2 LINE L1 -2 5878 5313 3 1074 3436 166 11 6 chr4 64220780 64221411 -91408709 + Lx LINE L1 6020 6653 -1 3 1074 4248 189 78 24 chr4 64221411 64221598 -91408522 - L1_Mur2 LINE L1 -554 5323 5124 3 1074 270 0 43 43 chr4 64221598 64221645 -91408475 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1074 993 92 21 0 chr4 64221645 64221787 -91408333 - B1_Mus1 SINE Alu -2 146 2 3 1074 4248 189 78 24 chr4 64221787 64222189 -91407931 - L1_Mur2 LINE L1 -754 5123 4715 3 1074 599 124 0 10 chr4 64222720 64222818 -91407302 - B2_Mm2 SINE B2 -2 193 97 3 1074 186 306 133 31 chr4 64223144 64223272 -91406848 - MIR3 SINE MIR -67 141 1 3 1074 594 179 0 32 chr4 64223491 64223647 -91406473 + GA-rich Low_complexity Low_complexity 3 153 0 3 1074 396 40 0 0 chr4 64224120 64224170 -91405950 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1074 368 320 82 38 chr4 64224348 64224507 -91405613 + B4A SINE B4 109 274 -18 3 1074 696 350 129 3 chr4 64224632 64224927 -91405193 + MLT1F1 LTR MaLR 186 517 -52 3 1075 391 323 18 42 chr4 64225680 64225848 -91404272 - MER5A1 DNA MER1_type 0 166 3 3 1075 867 83 0 0 chr4 64225935 64226056 -91404064 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 3 1075 198 0 0 0 chr4 64228072 64228094 -91402026 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 3 1075 6153 82 6 37 chr4 64228306 64229191 -91400929 - Lx3_Mus LINE L1 -8 7001 6145 3 1075 3966 70 6 10 chr4 64229194 64229715 -91400405 + L1_Mur1 LINE L1 5368 5886 0 3 1075 276 30 0 0 chr4 64229738 64229771 -91400349 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3 1075 562 322 16 8 chr4 64229956 64230233 -91399887 + L1MA4 LINE L1 5654 5938 -233 3 1075 2230 195 69 26 chr4 64232444 64232949 -91397171 - RLTR11A2 LTR ERVK 0 527 1 3 1075 22 35 0 0 chr4 64233567 64233596 -91396524 + AT_rich Low_complexity Low_complexity 1 29 0 3 1075 366 61 0 0 chr4 64234904 64234953 -91395167 + (TTG)n Simple_repeat Simple_repeat 3 51 0 3 1075 925 148 6 6 chr4 64234954 64235130 -91394990 + CT-rich Low_complexity Low_complexity 3 178 0 3 1075 216 294 0 14 chr4 64235172 64235241 -91394879 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 3 1075 323 353 21 35 chr4 64236062 64236281 -91393839 + MIRb SINE MIR 42 253 -9 3 1075 190 371 76 23 chr4 64237692 64237863 -91392257 - MIRc SINE MIR -62 206 27 3 1075 309 295 30 79 chr4 64238081 64238346 -91391774 - L1MC4a LINE L1 -10 7872 7621 3 1075 1058 304 7 77 chr4 64238430 64238886 -91391234 - Lx8 LINE L1 -22 7451 7028 3 1075 2052 300 53 20 chr4 64239000 64239611 -91390509 + Lx8 LINE L1 6229 6857 -616 3 1075 450 0 0 0 chr4 64239611 64239661 -91390459 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1075 2052 330 66 26 chr4 64239661 64239787 -91390333 + Lx8 LINE L1 6858 6907 -566 3 1075 263 355 61 29 chr4 64239833 64240111 -91390009 - L1MC4a LINE L1 -400 7482 7196 3 1075 527 96 12 0 chr4 64240271 64240354 -91389766 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 3 1075 22 0 0 0 chr4 64240427 64240449 -91389671 + AT_rich Low_complexity Low_complexity 1 22 0 3 1075 194 293 0 56 chr4 64240589 64240660 -91389460 - MIR SINE MIR -138 124 62 3 1075 479 17 17 0 chr4 64242147 64242207 -91387913 + (TATG)n Simple_repeat Simple_repeat 3 63 0 3 1075 218 340 82 9 chr4 64242890 64243000 -91387120 - MIR SINE MIR -75 133 16 3 1075 441 0 0 0 chr4 64245385 64245434 -91384686 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1075 399 21 0 0 chr4 64245434 64245481 -91384639 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1075 271 319 139 16 chr4 64245685 64245879 -91384241 - MIRc SINE MIR -25 243 26 3 1075 196 324 29 14 chr4 64246307 64246376 -91383744 + MIRb SINE MIR 121 190 -78 3 1075 333 0 0 0 chr4 64247022 64247059 -91383061 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1075 267 212 0 0 chr4 64247522 64247588 -91382532 + Lx2B LINE L1 6932 6997 -3 3 1075 275 357 108 56 chr4 64247594 64247843 -91382277 - LTR33 LTR ERVL -46 469 208 3 1075 309 68 0 0 chr4 64247947 64247991 -91382129 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1075 708 275 39 5 chr4 64248016 64248224 -91381896 + ID_B1 SINE B4 3 217 -7 3 1075 331 343 0 0 chr4 64248595 64248703 -91381417 + MLT1E2 LTR MaLR 1 108 -397 3 1075 955 169 144 0 chr4 64248733 64248928 -91381192 - ORR1B2 LTR MaLR -144 223 1 3 1075 2333 138 14 141 chr4 64248954 64249038 -91381082 + RLTR10C LTR ERVK 1 84 -352 3 1075 486 0 0 0 chr4 64249038 64249092 -91381028 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1075 2333 138 14 141 chr4 64249092 64249503 -91380617 + RLTR10C LTR ERVK 85 432 -4 3 1075 449 368 119 13 chr4 64249641 64249944 -91380176 + MLT1E2 LTR MaLR 285 619 -8 3 1075 962 285 26 12 chr4 64250062 64250406 -91379714 + L1M5 LINE L1 5455 5803 -641 3 1075 673 272 38 34 chr4 64250390 64250626 -91379494 + L1MB7 LINE L1 5903 6139 -45 3 1075 746 91 207 0 chr4 64250876 64250997 -91379123 - B1_Mm SINE Alu 0 147 2 3 1075 5746 86 9 15 chr4 64251231 64252438 -91377682 - Lx3_Mus LINE L1 -733 6276 5087 3 1075 5119 82 26 12 chr4 64252439 64253164 -91376956 + Lx3_Mus LINE L1 6274 7008 -1 3 1075 660 326 5 11 chr4 64253305 64253491 -91376629 - B3 SINE B2 -30 186 2 3 1075 327 363 16 0 chr4 64253705 64253829 -91376291 + MER5A1 DNA MER1_type 32 157 -9 3 1075 238 377 31 43 chr4 64254711 64254966 -91375154 + LTR85a LTR Gypsy? 20 271 -431 3 1075 330 26 0 0 chr4 64255778 64255817 -91374303 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1075 189 260 0 74 chr4 64256537 64256591 -91373529 + L2a LINE L2 3372 3421 -5 3 1075 271 276 76 67 chr4 64256660 64256765 -91373355 - MER81 DNA AcHobo -4 110 5 3 1075 477 292 16 16 chr4 64257041 64257163 -91372957 + MLT1L LTR MaLR 168 289 -321 3 1075 253 247 136 0 chr4 64258090 64258171 -91371949 + MTEb LTR MaLR 288 379 0 3 1075 1212 124 162 9 chr4 64258304 64258532 -91371588 - Lx LINE L1 0 6654 6392 3 1075 297 0 0 0 chr4 64258975 64259008 -91371112 + (CATTT)n Simple_repeat Simple_repeat 1 33 0 3 1075 21 57 0 0 chr4 64259114 64259149 -91370971 + AT_rich Low_complexity Low_complexity 1 35 0 3 1075 244 351 88 0 chr4 64259314 64259428 -91370692 + MIRb SINE MIR 45 168 -100 3 1075 574 332 81 59 chr4 64260636 64260908 -91369212 - MTEa LTR MaLR -101 278 1 3 1075 271 330 79 125 chr4 64260968 64261033 -91369087 - B4 SINE B4 0 292 238 3 1075 528 16 0 0 chr4 64261033 64261094 -91369026 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 3 1075 271 330 79 125 chr4 64261094 64261333 -91368787 - B4 SINE B4 -55 237 2 3 1075 1131 71 0 0 chr4 64261383 64261523 -91368597 - B1_Mus1 SINE Alu -7 141 2 3 1075 4804 52 0 3 chr4 64261745 64262358 -91367762 + L1_Mm LINE L1 4785 5395 -488 3 1075 259 322 0 103 chr4 64262358 64262455 -91367665 + MTE2b LTR MaLR 35 121 -258 3 1075 354 228 13 206 chr4 64262493 64262674 -91367446 + MTE2b LTR MaLR 233 379 0 3 1075 217 361 60 30 chr4 64263196 64263296 -91366824 + RSINE1 SINE B4 7 109 -56 3 1075 360 0 0 0 chr4 64263296 64263336 -91366784 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1075 576 262 44 35 chr4 64263436 64263665 -91366455 + L1ME2 LINE L1 5927 6157 -7 3 1075 21 0 0 0 chr4 64264618 64264639 -91365481 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 413 276 81 0 chr4 64264734 64264857 -91365263 - RMER30 DNA MER1_type -60 142 10 3 1075 522 31 0 0 chr4 64264916 64264980 -91365140 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1075 236 231 9 53 chr4 64264982 64265096 -91365024 + (TATG)n Simple_repeat Simple_repeat 4 112 0 3 1075 342 239 26 32 chr4 64265327 64265483 -91364637 + (TATG)n Simple_repeat Simple_repeat 4 158 0 3 1075 434 136 12 0 chr4 64265602 64265683 -91364437 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1075 425 19 19 0 chr4 64265864 64265918 -91364202 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1075 31 0 0 0 chr4 64266734 64266765 -91363355 + AT_rich Low_complexity Low_complexity 1 31 0 3 1075 2677 179 15 34 chr4 64266773 64267305 -91362815 - Lx3C LINE L1 -4 6972 6451 3 1075 23 33 0 0 chr4 64267395 64267425 -91362695 + AT_rich Low_complexity Low_complexity 1 30 0 3 1075 1351 257 53 32 chr4 64267856 64268230 -91361890 - MTD LTR MaLR 0 419 38 3 1075 378 0 0 0 chr4 64268235 64268277 -91361843 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1075 208 211 14 14 chr4 64268607 64268679 -91361441 + GA-rich Low_complexity Low_complexity 1 72 0 3 1075 249 33 0 0 chr4 64269442 64269472 -91360648 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3 1075 418 276 0 101 chr4 64269583 64269772 -91360348 - Lx5 LINE L1 -17 7033 6864 3 1075 549 203 14 12 chr4 64269760 64269902 -91360218 - Lx5 LINE L1 -1026 6032 5890 3 1075 357 82 0 0 chr4 64270174 64270223 -91359897 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4 1075 315 0 0 0 chr4 64271274 64271309 -91358811 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1075 1327 105 0 5 chr4 64271428 64271620 -91358500 - B2_Mm2 SINE B2 -4 191 1 4 1075 441 333 8 0 chr4 64271708 64271825 -91358295 - ID_B1 SINE B4 -28 196 79 4 1075 435 19 0 0 chr4 64272060 64272112 -91358008 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1075 627 354 34 30 chr4 64272139 64272407 -91357713 - B4A SINE B4 -23 269 1 4 1075 23 33 0 0 chr4 64272959 64272989 -91357131 + AT_rich Low_complexity Low_complexity 1 30 0 4 1075 495 0 0 0 chr4 64273426 64273481 -91356639 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1075 2858 221 46 22 chr4 64273485 64274162 -91355958 - Lx5 LINE L1 -8 7042 6350 4 1075 316 178 13 40 chr4 64274162 64274238 -91355882 - RLTR12A LTR ERVK -494 74 1 4 1075 459 184 87 0 chr4 64274238 64274313 -91355807 + ORR1B2 LTR MaLR 284 367 0 4 1075 364 313 10 0 chr4 64274321 64274420 -91355700 - MTEa LTR MaLR -277 102 3 4 1075 363 199 15 88 chr4 64274634 64274838 -91355282 + RMER17C LTR ERVK 87 275 -135 4 1075 5665 295 57 56 chr4 64274879 64275690 -91354430 - MERVL_2A-int LTR ERVL -282 5479 4682 4 1075 5862 105 17 8 chr4 64275690 64276563 -91353557 + Lx3_Mus LINE L1 6116 6996 -13 4 1075 5665 295 57 56 chr4 64276563 64278023 -91352097 - MERVL_2A-int LTR ERVL -1080 4681 3207 4 1075 3237 174 45 10 chr4 64278032 64278612 -91351508 - RLTR17 LTR ERVK -1 691 92 4 1075 3846 311 75 58 chr4 64278632 64280804 -91349316 - MERVL_2A-int LTR ERVL -2629 3085 877 4 1075 14919 66 5 7 chr4 64280836 64283474 -91346646 - L1Md_F2 LINE L1 -5 6577 3943 4 1075 2618 56 15 0 chr4 64283490 64283832 -91346288 - L1_Mus1 LINE L1 0 6567 6221 4 1075 656 305 88 26 chr4 64283984 64284332 -91345788 - MERVL_2A-int LTR ERVL -4993 768 341 4 1075 6185 66 1 1 chr4 64284332 64285137 -91344983 - L1Md_F2 LINE L1 -1 6581 5777 4 1075 513 286 75 72 chr4 64285137 64285478 -91344642 - MERVL_2A-int LTR ERVL -5374 340 6 4 1075 511 321 162 11 chr4 64285482 64285945 -91344175 - MT2A LTR ERVL 0 533 1 4 1075 611 288 110 48 chr4 64287484 64287757 -91342363 + B4A SINE B4 1 290 -2 4 1075 369 0 0 0 chr4 64287767 64287808 -91342312 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1075 753 133 0 0 chr4 64287808 64287966 -91342154 + (GA)n Simple_repeat Simple_repeat 1 158 0 4 1075 4295 172 91 8 chr4 64288410 64289249 -91340871 - RMER13B LTR ERVK 0 908 1 4 1075 1087 288 7 0 chr4 64289821 64290095 -91340025 + Lx5 LINE L1 6464 6739 -311 4 1075 906 313 91 23 chr4 64290768 64291154 -91338966 - MLT1C LTR MaLR -5 462 51 4 1075 312 91 0 0 chr4 64294019 64294063 -91336057 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1075 21 36 0 0 chr4 64294063 64294091 -91336029 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 1992 189 9 0 chr4 64294105 64294448 -91335672 - Lx2B LINE L1 -51 6949 6604 4 1075 614 76 22 0 chr4 64297620 64297712 -91332408 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 4 1075 910 281 51 39 chr4 64297734 64298151 -91331969 + MLT2B4 LTR ERVL 42 451 -13 4 1075 414 271 38 43 chr4 64298164 64298349 -91331771 + ERVL-B4-int LTR ERVL 1 184 -5530 4 1075 288 0 0 0 chr4 64298521 64298553 -91331567 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1075 471 343 48 16 chr4 64298608 64298860 -91331260 + ERVL-B4-int LTR ERVL 343 602 -5112 4 1075 3663 318 150 48 chr4 64299115 64300442 -91329678 + ERVL-B4-int LTR ERVL 970 2418 -3296 4 1075 1035 109 0 7 chr4 64300442 64300590 -91329530 - B1_Mm SINE Alu 0 147 1 4 1075 3663 315 101 66 chr4 64300590 64302539 -91327581 + ERVL-B4-int LTR ERVL 2419 4449 -1265 4 1075 347 311 123 59 chr4 64302723 64303055 -91327065 + ERVL-B4-int LTR ERVL 5081 5477 -280 4 1075 225 94 0 0 chr4 64303274 64303306 -91326814 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1075 569 145 28 165 chr4 64303417 64303599 -91326521 - Lx3A LINE L1 -5 6976 6820 4 1075 324 125 0 0 chr4 64303615 64303679 -91326441 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 4 1075 1268 34 0 0 chr4 64303680 64303827 -91326293 - B1_Mm SINE Alu 0 147 1 4 1075 1942 129 0 0 chr4 64303827 64304105 -91326015 - Lx3A LINE L1 -145 6836 6559 4 1075 21 36 0 0 chr4 64304140 64304168 -91325952 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 780 290 161 16 chr4 64304285 64304663 -91325457 + MLT2B4 LTR ERVL 120 552 -4 4 1075 27 49 0 0 chr4 64305455 64305496 -91324624 + AT_rich Low_complexity Low_complexity 1 41 0 4 1075 407 312 65 43 chr4 64305641 64306039 -91324081 - L1M4 LINE L1 -1950 4196 3790 4 1075 360 0 0 0 chr4 64306204 64306244 -91323876 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1075 1374 285 28 6 chr4 64306289 64306645 -91323475 - MTE2a LTR MaLR 0 379 16 4 1075 234 62 0 0 chr4 64306904 64306936 -91323184 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1075 294 282 179 9 chr4 64309123 64309267 -91320853 - MIR3 SINE MIR -30 178 31 4 1075 234 0 0 0 chr4 64309593 64309619 -91320501 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1075 765 252 72 5 chr4 64309783 64309990 -91320130 + MamRep434 DNA TcMar 27 247 -179 4 1075 300 257 0 28 chr4 64310668 64310740 -91319380 - MLT2B5 LTR ERVL -646 71 2 4 1075 4321 184 47 7 chr4 64310904 64311753 -91318367 - Lx4B LINE L1 0 7058 6176 4 1075 2525 118 26 109 chr4 64311758 64312301 -91317819 + L1_Mur2 LINE L1 3312 3809 -2068 4 1075 2362 112 66 16 chr4 64312716 64313097 -91317023 - MTB LTR MaLR 0 400 1 4 1075 242 300 12 12 chr4 64313441 64313522 -91316598 + MLT1L LTR MaLR 530 610 0 4 1075 272 390 43 0 chr4 64313607 64313748 -91316372 + MLT1L LTR MaLR 135 281 -329 4 1075 267 368 30 43 chr4 64313907 64314137 -91315983 + MLT1L LTR MaLR 384 610 0 4 1075 606 28 0 0 chr4 64315109 64315181 -91314939 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1075 309 302 121 47 chr4 64315447 64315561 -91314559 - MT2A LTR ERVL -302 231 1 4 1075 351 306 10 30 chr4 64315561 64315662 -91314458 - MTEa LTR MaLR -280 99 1 4 1075 457 308 53 27 chr4 64315888 64316053 -91314067 + B3A SINE B2 5 176 -22 4 1075 248 0 0 30 chr4 64316053 64316086 -91314034 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1075 457 308 53 27 chr4 64316086 64316107 -91314013 + B3A SINE B2 177 195 -3 4 1075 247 382 66 22 chr4 64316566 64316748 -91313372 + MIR3 SINE MIR 13 202 -6 4 1075 218 330 64 9 chr4 64317149 64317259 -91312861 + MIR3 SINE MIR 45 160 -48 4 1075 756 279 48 22 chr4 64317358 64317589 -91312531 - MLT1K LTR MaLR -9 586 350 4 1075 305 281 120 32 chr4 64318895 64318910 -91311210 - ID_B1 SINE B4 0 224 89 4 1075 409 312 18 9 chr4 64318910 64319020 -91311100 - B1F SINE Alu -31 118 8 4 1075 25 0 0 0 chr4 64319044 64319069 -91311051 + AT_rich Low_complexity Low_complexity 1 25 0 4 1075 5589 160 21 9 chr4 64319069 64320029 -91310091 - Lx4A LINE L1 -1 7057 6087 4 1075 201 265 100 29 chr4 64320903 64320973 -91309147 - MIRm SINE MIR -149 127 53 4 1075 875 336 9 3 chr4 64321514 64321836 -91308284 + Lx8 LINE L1 6695 7018 -455 4 1075 630 298 70 47 chr4 64322284 64322455 -91307665 + Lx8 LINE L1 7071 7250 -223 4 1075 1609 240 169 7 chr4 64322455 64322912 -91307208 - MT2A LTR ERVL 0 533 3 4 1075 630 298 70 47 chr4 64322912 64322966 -91307154 + Lx8 LINE L1 7251 7297 -176 4 1075 450 0 0 0 chr4 64322966 64323016 -91307104 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1075 630 298 70 47 chr4 64323016 64323046 -91307074 + Lx8 LINE L1 7298 7333 -140 4 1075 762 88 27 13 chr4 64323313 64323462 -91306658 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 4 1075 954 302 60 29 chr4 64323519 64323870 -91306250 - MTD LTR MaLR -12 407 46 4 1075 21 0 0 0 chr4 64323999 64324020 -91306100 + AT_rich Low_complexity Low_complexity 1 21 0 4 1075 239 224 17 0 chr4 64324176 64324234 -91305886 + L1MB5 LINE L1 6107 6165 -9 4 1075 455 60 60 0 chr4 64324433 64324500 -91305620 - B1_Mus1 SINE Alu -41 107 37 4 1075 468 364 76 42 chr4 64324907 64325357 -91304763 - MLT1H-int LTR MaLR -893 516 52 4 1075 270 136 0 0 chr4 64325690 64325734 -91304386 + (TCC)n Simple_repeat Simple_repeat 2 45 0 4 1075 325 331 30 61 chr4 64327324 64327424 -91302696 + MIRm SINE MIR 13 111 -165 4 1075 2681 66 0 17 chr4 64327424 64327776 -91302344 - ORR1A1 LTR MaLR 0 346 1 4 1075 325 331 30 61 chr4 64327776 64327839 -91302281 + MIRm SINE MIR 112 171 -105 4 1075 503 329 57 32 chr4 64328114 64328271 -91301849 - B3A SINE B2 -34 164 4 4 1075 236 325 45 60 chr4 64329562 64329696 -91300424 - MLT1D LTR MaLR -42 463 332 4 1075 183 374 33 11 chr4 64330625 64330717 -91299403 + MIRb SINE MIR 84 177 -91 4 1075 763 308 0 5 chr4 64331518 64331727 -91298393 - B3 SINE B2 -4 212 5 4 1075 7159 132 12 2 chr4 64332888 64333985 -91296135 + Lx2B LINE L1 5599 6706 -294 4 1075 226 329 45 34 chr4 64334423 64334511 -91295609 + MIRc SINE MIR 29 117 -151 4 1075 257 269 137 21 chr4 64335721 64335816 -91294304 - PB1 SINE Alu -1 126 21 4 1075 201 182 23 0 chr4 64336066 64336110 -91294010 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 1075 652 265 33 7 chr4 64336591 64336743 -91293377 - B3 SINE B2 -4 212 57 4 1075 443 273 22 22 chr4 64336733 64336868 -91293252 - MTC LTR MaLR -286 135 1 4 1075 272 217 155 28 chr4 64338572 64338643 -91291477 + PB1 SINE Alu 35 114 -13 4 1075 285 241 0 0 chr4 64339235 64339322 -91290798 - Lx9 LINE L1 -10 7634 7548 4 1075 265 216 196 61 chr4 64339910 64340073 -91290047 - Lx7 LINE L1 -1 7695 7511 4 1075 8196 42 1 1 chr4 64340127 64341123 -91288997 + L1Md_F2 LINE L1 5587 6582 0 4 1075 1361 213 104 89 chr4 64341232 64341846 -91288274 - Lx7 LINE L1 -251 7445 6697 4 1075 449 319 66 16 chr4 64342002 64342305 -91287815 + L1MB8 LINE L1 5860 6177 -1 4 1075 3805 206 40 21 chr4 64342715 64343531 -91286589 + Lx5 LINE L1 6216 7047 -3 4 1075 22 56 0 0 chr4 64343570 64343606 -91286514 + AT_rich Low_complexity Low_complexity 1 36 0 4 1075 929 200 43 48 chr4 64344440 64344650 -91285470 + B3 SINE B2 1 209 -7 4 1075 181 143 0 0 chr4 64345428 64345456 -91284664 + L2b LINE L2 3329 3356 -19 4 1075 240 169 94 78 chr4 64346041 64346105 -91284015 + RMER15 LTR ERVL 51 115 -460 4 1075 1009 121 18 0 chr4 64346942 64347107 -91283013 - Lx3_Mus LINE L1 -1059 5950 5783 4 1075 32213 82 3 3 chr4 64347110 64351740 -91278380 - L1Md_F2 LINE L1 0 6582 1970 4 1075 207 0 0 0 chr4 64351740 64351763 -91278357 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1075 32213 101 42 1 chr4 64351763 64353112 -91277008 - L1Md_F2 LINE L1 -3914 1969 563 4 1075 6762 91 19 119 chr4 64353103 64354140 -91275980 - Lx3_Mus LINE L1 -75 5811 4908 4 1075 1837 97 12 0 chr4 64354140 64354398 -91275722 - L1_Mus1 LINE L1 0 6567 6307 5 1075 6762 91 19 119 chr4 64354398 64354691 -91275429 - Lx3_Mus LINE L1 -979 4907 4614 4 1075 6995 109 27 12 chr4 64354692 64355759 -91274361 + Lx3_Mus LINE L1 5923 7005 -4 5 1076 323 95 48 0 chr4 64356689 64356752 -91273368 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 5 1076 4449 8 0 4 chr4 64358073 64358609 -91271511 - L1Md_T LINE L1 0 6582 6089 5 1076 760 21 0 0 chr4 64358609 64358702 -91271418 + L1Md_T LINE L1 5991 6083 -499 5 1076 913 288 69 67 chr4 64359480 64359971 -91270149 + MLT2B4 LTR ERVL 1 501 -19 5 1076 468 35 0 0 chr4 64359977 64360035 -91270085 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1076 495 0 0 0 chr4 64360035 64360090 -91270030 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1076 408 20 0 0 chr4 64360161 64360210 -91269910 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 5 1076 451 96 24 0 chr4 64361666 64361749 -91268371 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1076 303 307 34 53 chr4 64361806 64361924 -91268196 - MLT1B LTR MaLR -85 305 163 5 1076 239 140 20 0 chr4 64362009 64362059 -91268061 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 5 1076 657 246 82 0 chr4 64362259 64362278 -91267842 - B3A SINE B2 0 198 179 5 1076 213 121 0 0 chr4 64362278 64362311 -91267809 + (TATG)n Simple_repeat Simple_repeat 4 36 0 5 1076 657 246 82 0 chr4 64362311 64362474 -91267646 - B3A SINE B2 -20 178 2 5 1076 287 261 0 18 chr4 64364232 64364345 -91265775 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 5 1076 631 298 111 79 chr4 64364417 64364623 -91265497 + ORR1E LTR MaLR 1 204 -155 5 1076 3672 38 2 9 chr4 64364623 64365073 -91265047 - L1Md_F2 LINE L1 0 6582 6136 5 1076 631 298 111 79 chr4 64365073 64365209 -91264911 + ORR1E LTR MaLR 205 354 -5 5 1076 2216 135 3 3 chr4 64365309 64365636 -91264484 - ORR1A2 LTR MaLR 0 327 1 5 1076 240 298 93 44 chr4 64365740 64366169 -91263951 + L1MC4 LINE L1 6851 7300 -742 5 1076 2528 46 0 0 chr4 64366449 64366774 -91263346 + L1Md_F2 LINE L1 5261 5585 -298 5 1076 8088 48 2 1 chr4 64366775 64367770 -91262350 + L1Md_F2 LINE L1 5587 6582 0 5 1076 317 280 74 9 chr4 64367859 64367967 -91262153 + L1MC4 LINE L1 7694 7808 -234 5 1076 549 110 0 0 chr4 64368129 64368211 -91261909 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 5 1076 462 18 0 0 chr4 64368978 64369033 -91261087 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1076 3887 23 0 2 chr4 64369836 64370309 -91259811 + L1Md_T LINE L1 5114 5586 -297 5 1076 8396 34 1 0 chr4 64370309 64371303 -91258817 + L1Md_T LINE L1 5587 6581 -1 5 1076 414 57 0 0 chr4 64371619 64371672 -91258448 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1076 220 128 11 55 chr4 64371831 64371922 -91258198 + A-rich Low_complexity Low_complexity 2 88 0 5 1076 398 110 27 0 chr4 64372781 64372854 -91257266 + (CATA)n Simple_repeat Simple_repeat 2 76 0 5 1076 218 228 50 50 chr4 64373726 64373786 -91256334 - L2b LINE L2 0 3375 3316 5 1076 3214 70 7 18 chr4 64375754 64376188 -91253932 + L1_Mus1 LINE L1 6137 6565 -2 5 1076 705 319 45 40 chr4 64376877 64377099 -91253021 + B4A SINE B4 1 223 -69 5 1076 192 40 0 0 chr4 64377885 64377910 -91252210 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1076 1875 67 16 0 chr4 64378349 64378604 -91251516 + Lx3_Mus LINE L1 6330 6588 -421 5 1076 186 206 0 149 chr4 64379010 64379084 -91251036 - MIRm SINE MIR -92 184 122 5 1076 479 296 51 46 chr4 64379181 64379376 -91250744 + MLT1L LTR MaLR 413 608 -2 5 1076 260 250 26 13 chr4 64380724 64380801 -91249319 - MLT1A0 LTR MaLR -38 327 250 5 1076 26 0 0 0 chr4 64381212 64381238 -91248882 + AT_rich Low_complexity Low_complexity 1 26 0 5 1076 21 36 0 0 chr4 64381259 64381287 -91248833 + AT_rich Low_complexity Low_complexity 1 28 0 5 1076 222 174 0 0 chr4 64382129 64382175 -91247945 + T-rich Low_complexity Low_complexity 1 46 0 5 1076 221 128 0 41 chr4 64382500 64382549 -91247571 + T-rich Low_complexity Low_complexity 2 48 0 5 1076 553 92 10 10 chr4 64382782 64382881 -91247239 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1076 671 70 26 9 chr4 64383617 64383733 -91246387 + (TAGA)n Simple_repeat Simple_repeat 3 120 0 5 1076 184 293 118 13 chr4 64383935 64384011 -91246109 + MIRc SINE MIR 47 130 -138 5 1076 26 0 0 0 chr4 64384847 64384873 -91245247 + AT_rich Low_complexity Low_complexity 1 26 0 5 1076 354 339 111 39 chr4 64385376 64385557 -91244563 + MLT1I LTR MaLR 82 275 -136 5 1076 225 267 0 51 chr4 64385758 64385837 -91244283 - B4A SINE B4 -2 290 216 5 1076 21 0 0 0 chr4 64385837 64385858 -91244262 + AT_rich Low_complexity Low_complexity 1 21 0 5 1076 277 363 135 31 chr4 64386736 64386958 -91243162 + L3 LINE CR1 4210 4454 -35 5 1076 22 0 0 0 chr4 64387114 64387136 -91242984 + AT_rich Low_complexity Low_complexity 1 22 0 5 1076 4731 95 12 0 chr4 64387702 64388363 -91241757 - L1_Mus1 LINE L1 -7 6560 5892 5 1076 3213 124 4 0 chr4 64388363 64388845 -91241275 + L1_Mus1 LINE L1 5390 5873 -10 5 1076 2775 148 53 12 chr4 64388852 64389365 -91240755 - L1_Mur2 LINE L1 -749 5128 4595 5 1076 6628 82 64 2 chr4 64389605 64390591 -91239529 + L1_Mus1 LINE L1 5521 6567 0 5 1076 2599 90 3 23 chr4 64390713 64391099 -91239021 - Lx3_Mus LINE L1 -877 6132 5755 5 1076 5634 108 19 8 chr4 64391099 64391955 -91238165 + Lx3_Mus LINE L1 6136 7000 -9 5 1076 24 0 0 0 chr4 64392396 64392420 -91237700 + AT_rich Low_complexity Low_complexity 1 24 0 5 1076 399 21 0 0 chr4 64392462 64392510 -91237610 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 1076 200 191 21 21 chr4 64392572 64392620 -91237500 + T-rich Low_complexity Low_complexity 1 48 0 5 1076 1270 263 57 12 chr4 64393445 64393846 -91236274 + MTD LTR MaLR 1 419 0 5 1076 615 229 114 28 chr4 64393864 64394075 -91236045 + MTD-int LTR MaLR 31 259 -999 5 1076 737 330 106 41 chr4 64394084 64394589 -91235531 + Lx6 LINE L1 6515 7428 -32 5 1076 467 313 129 44 chr4 64394639 64394961 -91235159 + MTD-int LTR MaLR 335 649 -609 5 1076 2839 184 74 3 chr4 64394962 64395585 -91234535 + L1_Mur1 LINE L1 2471 3137 -2749 5 1076 30201 115 24 9 chr4 64395658 64401947 -91228173 - L1_Mus1 LINE L1 0 6567 184 5 1076 217 304 118 34 chr4 64402168 64402287 -91227833 - MIR SINE MIR -21 241 113 5 1076 609 14 0 0 chr4 64405233 64405303 -91224817 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 5 1076 378 61 0 0 chr4 64406997 64407046 -91223074 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1076 691 221 19 51 chr4 64407351 64407508 -91222612 + B3A SINE B2 5 156 -42 5 1076 459 0 0 0 chr4 64407509 64407560 -91222560 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1076 774 236 7 0 chr4 64407575 64407723 -91222397 + B4A SINE B4 7 155 -137 5 1076 378 0 0 0 chr4 64407796 64407838 -91222282 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1076 378 0 0 0 chr4 64407839 64407881 -91222239 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 5 1076 1889 159 13 0 chr4 64408088 64408390 -91221730 + Lx2 LINE L1 6441 6746 -251 5 1076 2614 215 12 0 chr4 64408390 64408898 -91221222 + Lx2A1 LINE L1 6493 7006 -2 5 1076 438 53 0 0 chr4 64409753 64409810 -91220310 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1076 2267 153 49 12 chr4 64409824 64410235 -91219885 + Lx3C LINE L1 6544 6969 -7 5 1076 230 0 0 32 chr4 64410235 64410266 -91219854 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5 1076 1645 41 0 0 chr4 64410266 64410461 -91219659 + L1Md_F2 LINE L1 5392 5586 -297 5 1076 7957 44 4 0 chr4 64410461 64411439 -91218681 + L1Md_F2 LINE L1 5587 6568 -14 5 1076 203 171 0 0 chr4 64411446 64411487 -91218633 + A-rich Low_complexity Low_complexity 4 44 0 5 1076 1129 69 0 0 chr4 64412666 64412810 -91217310 - B1_Mm SINE Alu 0 147 4 5 1076 2372 231 28 109 chr4 64412964 64413886 -91216234 - RMER17B LTR ERVK -111 847 1 5 1076 402 21 0 0 chr4 64414175 64414222 -91215898 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1076 613 359 37 33 chr4 64415606 64415851 -91214269 + B4A SINE B4 31 276 -16 5 1076 2013 171 76 13 chr4 64415909 64416305 -91213815 - MTC LTR MaLR 0 421 1 5 1076 789 244 80 14 chr4 64417667 64417879 -91212241 - Lx8 LINE L1 -408 7065 6840 5 1076 449 302 46 8 chr4 64418310 64418440 -91211680 - MER63B DNA AcHobo -3 433 299 5 1076 23 0 0 0 chr4 64418445 64418468 -91211652 + AT_rich Low_complexity Low_complexity 1 23 0 5 1076 23 0 0 0 chr4 64419277 64419300 -91210820 + AT_rich Low_complexity Low_complexity 1 23 0 5 1076 25 31 0 0 chr4 64419581 64419613 -91210507 + AT_rich Low_complexity Low_complexity 1 32 0 5 1076 1358 131 131 0 chr4 64419738 64419983 -91210137 + Lx2 LINE L1 6721 6997 0 5 1076 218 81 27 0 chr4 64420552 64420589 -91209531 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1076 337 329 46 103 chr4 64420992 64421273 -91208847 + HAL1 LINE L1 1 265 -2242 5 1076 356 40 20 0 chr4 64421414 64421464 -91208656 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 5 1076 327 25 0 0 chr4 64422377 64422417 -91207703 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1076 408 88 0 0 chr4 64423136 64423193 -91206927 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1076 197 217 0 62 chr4 64423237 64423301 -91206819 + L2b LINE L2 3097 3156 -219 5 1076 232 273 67 97 chr4 64423574 64423708 -91206412 + MamSINE1 SINE tRNA 96 225 -65 5 1076 2853 37 6 3 chr4 64423899 64424253 -91205867 + L1Md_F3 LINE L1 6227 6581 -3 5 1076 533 113 132 0 chr4 64424260 64424366 -91205754 - L1Md_F2 LINE L1 -47 6535 6416 5 1076 264 88 0 0 chr4 64424364 64424398 -91205722 - L1_Mus2 LINE L1 -192 6374 6341 5 1076 30 27 0 0 chr4 64424420 64424457 -91205663 + AT_rich Low_complexity Low_complexity 1 37 0 5 1076 340 382 83 5 chr4 64424941 64425146 -91204974 + MIRc SINE MIR 34 254 -14 5 1076 2011 196 52 8 chr4 64425640 64426041 -91204079 + MTC LTR MaLR 2 420 -1 5 1076 21 36 0 0 chr4 64426122 64426150 -91203970 + AT_rich Low_complexity Low_complexity 1 28 0 5 1076 681 13 0 0 chr4 64426300 64426378 -91203742 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1076 303 28 0 0 chr4 64426993 64427029 -91203091 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1076 1082 307 73 9 chr4 64427221 64427550 -91202570 + MTE2b LTR MaLR 1 350 -29 6 1076 261 57 0 0 chr4 64427862 64427897 -91202223 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1076 2109 62 3 49 chr4 64428395 64428699 -91201421 - L1_Mus2 LINE L1 0 6566 6277 6 1076 2192 56 0 0 chr4 64428699 64428965 -91201155 + L1_Mus2 LINE L1 6017 6282 -284 6 1076 24 0 0 0 chr4 64429328 64429352 -91200768 + AT_rich Low_complexity Low_complexity 1 24 0 6 1076 323 269 8 30 chr4 64429565 64429699 -91200421 + L1MC4a LINE L1 6448 6578 -1304 6 1076 340 379 41 69 chr4 64429842 64430060 -91200060 - MLT1G LTR MaLR -313 278 67 6 1076 680 64 0 11 chr4 64430069 64430164 -91199956 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 6 1076 468 0 0 0 chr4 64430164 64430216 -91199904 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1076 1041 328 11 42 chr4 64430216 64430598 -91199522 - MTE2b LTR MaLR -8 371 2 6 1076 1540 285 39 59 chr4 64430599 64431321 -91198799 - MTE2b-int LTR MaLR 0 1580 855 6 1076 214 73 49 0 chr4 64431474 64431515 -91198605 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1076 232 258 89 44 chr4 64431522 64431680 -91198440 + L1MC4a LINE L1 6649 6813 -1229 6 1076 691 369 51 22 chr4 64431686 64431960 -91198160 + B4A SINE B4 1 282 -10 6 1076 879 103 0 151 chr4 64432033 64432205 -91197915 + B1_Mm SINE Alu 1 146 -1 6 1076 24 0 0 29 chr4 64432205 64432222 -91197898 + AT_rich Low_complexity Low_complexity 1 17 0 6 1076 3193 52 3 0 chr4 64432222 64432606 -91197514 - IAPEY_LTR LTR ERVK 0 385 1 6 1076 24 0 0 29 chr4 64432606 64432623 -91197497 + AT_rich Low_complexity Low_complexity 1 17 0 6 1076 248 344 42 34 chr4 64432623 64432885 -91197235 + L1MC4a LINE L1 6824 7087 -955 6 1076 747 262 38 0 chr4 64433343 64433526 -91196594 + B3A SINE B2 2 191 -7 6 1076 585 320 151 84 chr4 64433909 64434186 -91195934 + MLT1C LTR MaLR 32 357 -110 6 1076 1943 132 9 55 chr4 64434186 64434530 -91195590 - ORR1A4 LTR MaLR 0 329 2 6 1076 585 302 73 40 chr4 64434530 64434660 -91195460 + MLT1C LTR MaLR 326 449 -18 6 1076 3179 233 36 15 chr4 64434660 64435323 -91194797 + Lx5 LINE L1 6369 7045 -5 6 1076 366 286 19 58 chr4 64435458 64435614 -91194506 + L1MA8 LINE L1 6130 6279 -12 6 1076 285 328 84 34 chr4 64436729 64436991 -91193129 + L1M5 LINE L1 5541 5815 -347 6 1076 294 87 0 0 chr4 64437050 64437096 -91193024 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1076 236 115 86 9 chr4 64437156 64437261 -91192859 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 1076 894 324 28 52 chr4 64437348 64437674 -91192446 - MTE2b LTR MaLR -4 375 58 6 1076 347 221 116 0 chr4 64437674 64437760 -91192360 - MTE2b LTR MaLR -281 98 3 6 1076 514 396 57 25 chr4 64438033 64438563 -91191557 - Lx8 LINE L1 -187 7286 6740 6 1076 836 314 104 0 chr4 64438603 64438689 -91191431 - L1_Mur3 LINE L1 -55 5825 5722 6 1076 207 0 0 0 chr4 64438689 64438712 -91191408 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 6 1076 836 314 104 0 chr4 64438712 64439048 -91191072 - L1_Mur3 LINE L1 -159 5721 5360 6 1076 414 210 0 31 chr4 64439067 64439195 -91190925 - Lx9 LINE L1 -1 7643 7520 6 1076 454 185 0 15 chr4 64439210 64439342 -91190778 + (TG)n Simple_repeat Simple_repeat 2 131 0 6 1076 249 103 0 0 chr4 64439346 64439385 -91190735 - Lx9 LINE L1 -167 7477 7439 6 1076 233 154 0 19 chr4 64439394 64439447 -91190673 - L1_Rod LINE L1 -518 5329 5278 6 1076 3256 324 93 42 chr4 64439477 64440434 -91189686 - MTE2b-int LTR MaLR -26 1554 490 6 1076 6205 47 3 8 chr4 64440434 64441214 -91188906 - L1Md_F2 LINE L1 -12 6570 5795 6 1076 3256 324 93 42 chr4 64441214 64441711 -91188409 - MTE2b-int LTR MaLR -1091 489 25 6 1076 1322 284 65 8 chr4 64441739 64442091 -91188029 - MTE2b LTR MaLR -5 374 3 6 1076 33 80 0 0 chr4 64442759 64442834 -91187286 + AT_rich Low_complexity Low_complexity 1 75 0 6 1076 4178 170 3 14 chr4 64444799 64445528 -91184592 - Lx LINE L1 0 6654 5934 6 1076 5850 151 9 11 chr4 64445528 64446663 -91183457 + Lx LINE L1 4801 5933 -703 6 1076 312 27 0 0 chr4 64447032 64447069 -91183051 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1076 288 0 0 0 chr4 64447428 64447460 -91182660 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 6 1076 393 241 13 0 chr4 64447780 64447859 -91182261 + MTE2b LTR MaLR 1 80 -299 6 1076 293 173 54 18 chr4 64448018 64448026 -91182094 + (TA)n Simple_repeat Simple_repeat 2 9 0 6 1076 417 39 0 0 chr4 64448026 64448077 -91182043 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1076 293 173 54 18 chr4 64448077 64448180 -91181940 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1076 1287 235 60 0 chr4 64448561 64448842 -91181278 - Lx3C LINE L1 -2 6974 6677 6 1076 328 321 103 49 chr4 64448844 64449067 -91181053 + MT2A LTR ERVL 279 513 -20 6 1076 511 302 63 21 chr4 64449308 64449545 -91180575 - L1MA9 LINE L1 -284 6028 5782 6 1076 189 147 0 0 chr4 64449546 64449580 -91180540 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1076 380 217 102 55 chr4 64452031 64452158 -91177962 + MT2B LTR ERVL 132 264 -337 6 1076 822 62 0 43 chr4 64452081 64452198 -91177922 + B1_Mm SINE Alu 36 147 0 6 1076 640 280 23 11 chr4 64452806 64452983 -91177137 + MTE2a LTR MaLR 1 179 -200 6 1076 265 315 14 0 chr4 64453827 64453900 -91176220 + ID4_ SINE ID 10 83 0 6 1076 224 167 21 0 chr4 64453926 64453974 -91176146 + GA-rich Low_complexity Low_complexity 2 50 0 6 1076 847 155 0 0 chr4 64454037 64454179 -91175941 - L1_Mus3 LINE L1 -926 4957 4816 6 1076 7556 116 9 15 chr4 64454170 64455869 -91174251 + L1_Mus3 LINE L1 4964 6638 0 6 1076 184 228 32 95 chr4 64456653 64456716 -91173404 - L2b LINE L2 0 3375 3317 6 1076 8861 11 0 0 chr4 64457142 64458649 -91171471 - L1Md_A LINE L1 -2 6580 5074 6 1076 23 0 0 0 chr4 64458817 64458840 -91171280 + AT_rich Low_complexity Low_complexity 1 23 0 6 1076 1047 255 23 138 chr4 64459000 64459428 -91170692 + MTE2a LTR MaLR 1 379 0 6 1076 1369 40 9 0 chr4 64460551 64460778 -91169342 + (TCTA)n Simple_repeat Simple_repeat 1 229 0 6 1076 714 254 26 10 chr4 64462183 64462378 -91167742 + B3 SINE B2 2 199 -17 6 1076 336 24 0 0 chr4 64462396 64462437 -91167683 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1076 285 294 118 39 chr4 64462459 64462714 -91167406 + L1MC4a LINE L1 7080 7354 -528 6 1076 544 277 33 25 chr4 64462710 64462951 -91167169 + L1MEc LINE L1 1212 1454 -4946 6 1076 665 35 23 0 chr4 64463857 64463944 -91166176 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 6 1076 224 237 51 0 chr4 64464678 64464737 -91165383 + MIRb SINE MIR 28 89 -179 6 1076 225 0 0 0 chr4 64464737 64464762 -91165358 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1076 191 337 70 0 chr4 64464784 64464870 -91165250 + MIRb SINE MIR 110 201 -67 6 1076 1801 215 50 7 chr4 64465435 64465838 -91164282 + MTC LTR MaLR 1 420 -1 6 1076 238 358 96 23 chr4 64466425 64466602 -91163518 + B4A SINE B4 35 224 -68 6 1076 222 37 0 0 chr4 64466617 64466644 -91163476 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1076 2771 135 11 5 chr4 64467130 64467603 -91162517 - L1_Mus4 LINE L1 0 6636 6178 6 1076 533 251 73 11 chr4 64468011 64468188 -91161932 - B3A SINE B2 -10 188 1 6 1076 2128 173 27 40 chr4 64468236 64468717 -91161403 - Lx3C LINE L1 -2 6974 6500 6 1076 2046 153 12 3 chr4 64468721 64469043 -91161077 - L1_Mur1 LINE L1 -83 5803 5479 6 1076 7173 127 93 13 chr4 64469068 64470449 -91159671 - Lx3B LINE L1 0 6973 5482 6 1076 589 179 46 73 chr4 64470776 64470927 -91159193 - B1_Mus2 SINE Alu 0 147 1 6 1076 258 409 31 8 chr4 64471511 64471639 -91158481 + MIRb SINE MIR 17 147 -121 6 1076 1678 262 20 8 chr4 64473024 64473424 -91156696 + MTD LTR MaLR 1 405 -14 6 1076 262 312 78 28 chr4 64473874 64474016 -91156104 + MIRc SINE MIR 54 202 -66 6 1076 22 0 0 0 chr4 64474796 64474818 -91155302 + AT_rich Low_complexity Low_complexity 1 22 0 6 1076 2306 172 43 5 chr4 64474831 64475229 -91154891 + MTC LTR MaLR 1 413 -8 6 1076 456 100 0 0 chr4 64475440 64475520 -91154600 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 1076 387 0 0 0 chr4 64475520 64475563 -91154557 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1076 477 0 0 0 chr4 64476103 64476156 -91153964 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1076 3314 55 2 0 chr4 64476330 64476752 -91153368 + L1Md_F2 LINE L1 5164 5586 -297 6 1076 8237 42 0 4 chr4 64476752 64477750 -91152370 + L1Md_F2 LINE L1 5587 6580 -2 6 1076 402 285 128 34 chr4 64479240 64479389 -91150731 + RSINE1 SINE B4 3 165 0 6 1076 198 91 0 0 chr4 64479397 64479430 -91150690 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1076 246 81 0 0 chr4 64479430 64479467 -91150653 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 6 1076 473 348 60 24 chr4 64479861 64480182 -91149938 + MT2A LTR ERVL 128 545 -56 6 1076 386 332 47 25 chr4 64480766 64481001 -91149119 + L1MEd LINE L1 682 921 -5198 6 1076 6534 82 29 1 chr4 64481419 64482318 -91147802 - L1_Mus3 LINE L1 -11 6627 5704 6 1076 790 219 64 6 chr4 64482374 64482530 -91147590 + RMER13A LTR ERVK 1 165 -695 6 1076 1548 185 13 10 chr4 64482530 64482830 -91147290 + Lx4A LINE L1 6756 7056 -2 6 1076 3757 62 10 7 chr4 64482962 64483604 -91146516 - L1_Mus2 LINE L1 -535 6031 5385 6 1076 612 179 0 0 chr4 64483600 64483706 -91146414 - Lx2 LINE L1 -131 6866 6761 6 1076 503 345 28 28 chr4 64483761 64483973 -91146147 + B3 SINE B2 5 216 0 6 1076 21 57 0 0 chr4 64483985 64484020 -91146100 + AT_rich Low_complexity Low_complexity 1 35 0 6 1076 1034 249 48 0 chr4 64484423 64484652 -91145468 + Tigger7 DNA MER2_type 3 242 -2249 6 1076 242 213 0 0 chr4 64484691 64484738 -91145382 - MTEb LTR MaLR -27 352 306 6 1076 394 308 42 26 chr4 64485234 64485424 -91144696 + Tigger7 DNA MER2_type 2137 2329 -162 6 1076 1757 103 8 0 chr4 64485458 64485721 -91144399 - L1_Mus3 LINE L1 0 6638 6374 6 1076 3004 101 2 2 chr4 64485746 64486172 -91143948 - L1_Mus2 LINE L1 -1 6565 6140 6 1076 499 331 80 19 chr4 64486394 64486656 -91143464 + Lx7 LINE L1 6936 7213 -260 6 1076 576 0 0 0 chr4 64486657 64486721 -91143399 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1076 224 333 0 44 chr4 64486802 64486937 -91143183 + GA-rich Low_complexity Low_complexity 3 131 0 6 1077 405 283 49 16 chr4 64488590 64488712 -91141408 - B4A SINE B4 -143 149 24 7 1077 944 225 144 13 chr4 64488983 64489371 -91140749 - Lx9 LINE L1 0 7644 7206 7 1077 483 248 81 69 chr4 64489735 64489908 -91140212 + B3A SINE B2 3 177 -21 7 1077 554 61 24 0 chr4 64489908 64489990 -91140130 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 7 1077 188 0 74 0 chr4 64491986 64492013 -91138107 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1077 408 20 0 0 chr4 64492425 64492474 -91137646 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1077 1338 67 0 0 chr4 64492477 64492655 -91137465 + (AGGGGG)n Simple_repeat Simple_repeat 1 178 0 7 1077 204 40 0 0 chr4 64492655 64492680 -91137440 + (GGGAGA)n Simple_repeat Simple_repeat 4 28 0 7 1077 856 262 49 120 chr4 64493477 64493885 -91136235 - MTEa LTR MaLR 0 379 1 7 1077 2069 189 40 20 chr4 64495830 64496235 -91133885 + MTC LTR MaLR 6 418 -3 7 1077 1452 44 0 0 chr4 64496655 64496835 -91133285 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1077 304 338 101 22 chr4 64497854 64497993 -91132127 - MIRb SINE MIR -75 193 44 7 1077 181 404 10 20 chr4 64498541 64498642 -91131478 - MIR3 SINE MIR -51 157 58 7 1077 3693 120 6 9 chr4 64499276 64499824 -91130296 - Lx LINE L1 -234 6420 5875 7 1077 860 191 6 6 chr4 64499821 64500000 -91130120 + Lx LINE L1 6403 6581 -73 7 1077 353 164 0 0 chr4 64500000 64500073 -91130047 + Lx LINE L1 6582 6654 0 1 1077 260 161 24 24 chr4 64500311 64500394 -91129726 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1077 3386 169 38 8 chr4 64500472 64501099 -91129021 - Lx2B LINE L1 -6 6994 6349 3 1077 195 139 0 0 chr4 64501527 64501563 -91128557 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1077 207 88 0 0 chr4 64502170 64502204 -91127916 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1077 595 336 43 11 chr4 64502550 64502830 -91127290 + Lx8 LINE L1 6990 7278 -195 6 1077 540 319 44 4 chr4 64503299 64503526 -91126594 + L1MD LINE L1 2529 2764 -3382 7 1077 23 0 0 0 chr4 64503601 64503624 -91126496 + AT_rich Low_complexity Low_complexity 1 23 0 8 1077 21 36 0 0 chr4 64503826 64503854 -91126266 + AT_rich Low_complexity Low_complexity 1 28 0 9 1077 32 0 0 0 chr4 64503891 64503923 -91126197 + AT_rich Low_complexity Low_complexity 1 32 0 1 1077 30 45 0 0 chr4 64504489 64504533 -91125587 + AT_rich Low_complexity Low_complexity 1 44 0 1 1077 1348 270 21 51 chr4 64505014 64505444 -91124676 + Lx7 LINE L1 6482 6898 -798 1 1077 450 53 0 0 chr4 64506235 64506292 -91123828 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1077 630 71 0 0 chr4 64506522 64506606 -91123514 + (TTTTC)n Simple_repeat Simple_repeat 4 87 0 1 1077 703 222 82 85 chr4 64506611 64506940 -91123180 - Lx7 LINE L1 -12 7684 7357 1 1077 561 99 0 0 chr4 64506979 64507060 -91123060 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 1 1077 1043 56 14 0 chr4 64507060 64507202 -91122918 + (GGAAA)n Simple_repeat Simple_repeat 2 145 0 1 1077 442 245 26 26 chr4 64507276 64507389 -91122731 - Lx7 LINE L1 -441 7255 7143 1 1077 283 302 47 120 chr4 64508318 64508340 -91121780 - B2_Mm2 SINE B2 -10 185 165 1 1077 420 67 0 0 chr4 64508340 64508400 -91121720 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1077 604 302 47 120 chr4 64508400 64508569 -91121551 - B3A SINE B2 -19 179 8 1 1077 28 71 0 0 chr4 64508589 64508645 -91121475 + AT_rich Low_complexity Low_complexity 1 56 0 2 1077 1309 330 53 28 chr4 64508709 64509886 -91120234 - L1M2 LINE L1 -1008 5135 3929 2 1077 724 295 131 36 chr4 64509894 64510499 -91119621 - L1M3 LINE L1 -1171 4969 4308 2 1077 246 203 32 63 chr4 64511613 64511676 -91118444 - MamGypLTR1a LTR Gypsy -656 128 68 2 1077 201 182 0 0 chr4 64512389 64512444 -91117676 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 2 1077 397 354 155 59 chr4 64512578 64513242 -91116878 - L2 LINE L2 -359 3060 2333 2 1077 41 21 0 0 chr4 64514480 64514528 -91115592 + AT_rich Low_complexity Low_complexity 1 48 0 2 1077 374 155 10 0 chr4 64514847 64514944 -91115176 + CT-rich Low_complexity Low_complexity 1 98 0 2 1077 186 83 51 77 chr4 64516162 64516201 -91113919 - L4 LINE RTE -527 1502 1465 2 1077 246 226 0 19 chr4 64516295 64516349 -91113771 - MIRb SINE MIR -166 102 50 2 1077 348 24 0 0 chr4 64516423 64516464 -91113656 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1077 2044 132 25 12 chr4 64516502 64516825 -91113295 + ORR1A2 LTR MaLR 1 327 0 3 1077 287 322 187 5 chr4 64517341 64517550 -91112570 - MIR SINE MIR -1 261 15 3 1077 355 106 30 0 chr4 64519378 64519444 -91110676 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 3 1077 5337 88 54 0 chr4 64519785 64520544 -91109576 - L1_Mus3 LINE L1 -6 6632 5833 3 1077 25 75 0 0 chr4 64520616 64520669 -91109451 + AT_rich Low_complexity Low_complexity 1 53 0 3 1077 32 0 0 0 chr4 64520739 64520771 -91109349 + AT_rich Low_complexity Low_complexity 1 32 0 3 1077 1501 207 132 11 chr4 64520773 64520914 -91109206 - Lx9 LINE L1 -2 7642 7478 3 1077 444 99 0 0 chr4 64520914 64520985 -91109135 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1077 1501 207 132 11 chr4 64520985 64521307 -91108813 - Lx9 LINE L1 -167 7477 7123 3 1077 446 159 11 0 chr4 64521307 64521395 -91108725 + CT-rich Low_complexity Low_complexity 3 91 0 3 1077 1653 188 0 6 chr4 64521395 64521706 -91108414 - Lx9 LINE L1 -481 7163 6855 4 1077 1293 35 23 0 chr4 64521776 64521950 -91108170 - L1Md_F3 LINE L1 0 6584 6407 4 1077 1814 29 0 0 chr4 64521952 64522161 -91107959 + L1Md_F3 LINE L1 6173 6381 -201 4 1077 245 392 58 18 chr4 64522300 64522526 -91107594 - Lx8 LINE L1 -270 7203 6969 4 1077 37936 52 3 12 chr4 64522528 64529642 -91100478 - L1Md_T LINE L1 0 6585 1 4 1077 1989 331 31 26 chr4 64529659 64530502 -91099618 - Lx8 LINE L1 -542 6931 6085 4 1077 299 207 80 9 chr4 64530702 64530814 -91099306 - Lx7 LINE L1 -1852 5844 5725 4 1077 2703 41 3 0 chr4 64531336 64531677 -91098443 + MT-int LTR MaLR 682 1023 -75 4 1077 1071 168 6 6 chr4 64532080 64532260 -91097860 - Lx2A1 LINE L1 -209 6799 6620 4 1077 181 262 0 67 chr4 64532389 64532434 -91097686 + L2b LINE L2 3331 3372 -3 4 1077 618 308 65 41 chr4 64532698 64533054 -91097066 + Lx9 LINE L1 5594 5958 -1686 4 1077 6408 126 74 8 chr4 64533225 64534362 -91095758 + Lx LINE L1 5460 6654 0 5 1077 383 323 115 112 chr4 64534406 64534720 -91095400 - MLT1A0 LTR MaLR -50 315 1 5 1077 382 279 48 0 chr4 64534927 64535074 -91095046 - Lx7 LINE L1 0 7696 7543 5 1077 458 233 230 12 chr4 64535134 64535295 -91094825 - B3 SINE B2 -19 197 2 5 1077 320 0 25 0 chr4 64536050 64536090 -91094030 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1077 197 350 216 25 chr4 64536614 64537256 -91092864 + L2a LINE L2 2223 2987 -432 5 1077 265 293 31 62 chr4 64537544 64537704 -91092416 + L2a LINE L2 3217 3371 -55 5 1077 32 0 0 0 chr4 64537750 64537782 -91092338 + AT_rich Low_complexity Low_complexity 1 32 0 5 1077 255 362 25 57 chr4 64537951 64538109 -91092011 - MIRb SINE MIR -23 245 93 5 1077 379 360 41 35 chr4 64538902 64539072 -91091048 + MER5B DNA MER1_type 7 177 -1 5 1077 278 346 78 50 chr4 64540872 64541091 -91089029 + Lx8 LINE L1 7249 7473 0 5 1077 36 62 0 0 chr4 64541155 64541219 -91088901 + AT_rich Low_complexity Low_complexity 1 64 0 6 1077 1308 267 32 27 chr4 64541768 64542138 -91087982 - MTE2b LTR MaLR -2 377 6 6 1077 2927 160 2 0 chr4 64542411 64542891 -91087229 - L1_Mm LINE L1 -178 5705 5225 6 1077 1705 152 81 62 chr4 64542886 64543257 -91086863 + Lx2 LINE L1 6615 6992 -5 6 1077 1173 100 0 0 chr4 64543552 64543823 -91086297 + (CA)n Simple_repeat Simple_repeat 1 271 0 6 1077 24 0 0 0 chr4 64543974 64543998 -91086122 + AT_rich Low_complexity Low_complexity 1 24 0 6 1077 24 0 0 0 chr4 64545092 64545116 -91085004 + AT_rich Low_complexity Low_complexity 1 24 0 6 1077 6299 18 0 0 chr4 64545116 64545823 -91084297 + MERVL-int LTR ERVL 2322 3028 -2457 6 1077 812 72 0 0 chr4 64546279 64546404 -91083716 - L1Md_F2 LINE L1 -2 6580 6456 6 1077 196 367 59 51 chr4 64546486 64546739 -91083381 + L2c LINE L2 3076 3330 -57 6 1077 910 184 124 0 chr4 64548890 64549091 -91081029 - URR1A DNA MER1_type 0 226 1 7 1077 323 253 125 60 chr4 64549271 64549439 -91080681 - L1MA9 LINE L1 -196 6095 5917 7 1077 482 289 62 10 chr4 64549442 64549699 -91080421 + L1MA8 LINE L1 4919 5194 -952 7 1077 474 18 0 0 chr4 64549752 64549807 -91080313 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1077 1585 285 36 19 chr4 64549858 64550350 -91079770 + Lx6 LINE L1 6562 7419 -41 7 1077 1270 255 112 12 chr4 64550421 64551013 -91079107 + L1MA8 LINE L1 5194 5842 -449 7 1077 22 35 0 0 chr4 64551391 64551420 -91078700 + AT_rich Low_complexity Low_complexity 1 29 0 7 1077 221 344 0 0 chr4 64551664 64551725 -91078395 + B3A SINE B2 1 61 -137 7 1077 388 97 58 0 chr4 64551725 64551787 -91078333 + (CAAA)n Simple_repeat Simple_repeat 4 68 0 7 1077 1029 96 7 0 chr4 64551787 64551933 -91078187 + B1_Mm SINE Alu 1 147 0 7 1077 388 97 58 0 chr4 64551933 64551973 -91078147 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 7 1077 309 109 0 0 chr4 64552009 64552055 -91078065 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1077 408 51 17 0 chr4 64552055 64552114 -91078006 - B1_Mus1 SINE Alu -88 60 1 8 1077 276 232 0 131 chr4 64552114 64552154 -91077966 - MT2B LTR ERVL -385 216 131 8 1077 1045 287 59 75 chr4 64552849 64553357 -91076763 + RLTR12B LTR ERVK 1 500 -28 8 1077 26 0 0 0 chr4 64553568 64553594 -91076526 + AT_rich Low_complexity Low_complexity 1 26 0 8 1077 3090 139 25 16 chr4 64553720 64554230 -91075890 + Lx LINE L1 6135 6649 -5 8 1077 3583 96 10 6 chr4 64554863 64555378 -91074742 - L1_Mus4 LINE L1 -5 6631 6115 8 1077 905 249 111 16 chr4 64555980 64556233 -91073887 - Lx8 LINE L1 -797 6676 6400 8 1077 687 209 0 8 chr4 64556233 64556363 -91073757 + B1_Mur4 SINE Alu 1 129 -21 8 1077 769 228 47 5 chr4 64556400 64556590 -91073530 - Lx8 LINE L1 -1057 6416 6219 8 1077 2291 56 26 0 chr4 64556561 64556863 -91073257 - L1Md_F2 LINE L1 -487 6095 5786 8 1077 3797 58 0 4 chr4 64556864 64557350 -91072770 + L1Md_F2 LINE L1 6098 6581 -1 8 1077 916 317 75 3 chr4 64557685 64558017 -91072103 + Lx8 LINE L1 6758 7113 -360 9 1077 253 184 96 81 chr4 64558013 64558149 -91071971 + Lx8 LINE L1 7334 7471 -2 9 1077 651 272 212 82 chr4 64558155 64558445 -91071675 + Tigger7 DNA MER2_type 101 433 -2058 9 1077 330 26 0 0 chr4 64558445 64558484 -91071636 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 9 1077 651 272 212 82 chr4 64558484 64558561 -91071559 + Tigger7 DNA MER2_type 434 516 -1975 9 1077 1409 243 40 6 chr4 64559007 64559427 -91070693 - L1MB7 LINE L1 -13 6171 5721 9 1077 312 27 0 0 chr4 64559427 64559464 -91070656 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1077 360 0 0 0 chr4 64559464 64559503 -91070617 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1077 306 0 0 0 chr4 64559503 64559536 -91070584 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1077 420 333 7 45 chr4 64559543 64559697 -91070423 - B3A SINE B2 -47 151 4 9 1077 1299 251 143 0 chr4 64559809 64560159 -91069961 + MTD LTR MaLR 6 405 -14 9 1077 432 55 0 0 chr4 64560166 64560221 -91069899 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1077 351 237 101 0 chr4 64560227 64560366 -91069754 - L1MB7 LINE L1 -825 5321 5169 9 1077 413 332 88 22 chr4 64560473 64560747 -91069373 - L1MEg LINE L1 -5016 1068 777 1 1077 630 307 11 6 chr4 64561007 64561187 -91068933 - B4 SINE B4 -6 286 106 1 1077 201 119 0 45 chr4 64562990 64563034 -91067086 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1077 217 325 105 29 chr4 64563082 64563253 -91066867 + MIRb SINE MIR 84 267 -1 1 1077 783 282 10 5 chr4 64563401 64563604 -91066516 - B3 SINE B2 -12 204 1 1 1077 243 0 0 0 chr4 64563706 64563733 -91066387 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1077 189 327 115 0 chr4 64563864 64563968 -91066152 - MIRb SINE MIR -54 214 99 1 1077 28 0 0 0 chr4 64564175 64564203 -91065917 + AT_rich Low_complexity Low_complexity 1 28 0 1 1077 238 304 20 0 chr4 64564280 64564382 -91065738 - L1ME2z LINE L1 -163 6281 6178 1 1077 378 0 0 0 chr4 64565499 64565541 -91064579 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1077 487 298 28 28 chr4 64565544 64565689 -91064431 - B1_Mur1 SINE Alu -3 146 2 1 1077 352 296 9 100 chr4 64565872 64566082 -91064038 + B3A SINE B2 2 192 -6 1 1077 708 262 49 0 chr4 64566104 64566348 -91063772 + Lx9 LINE L1 7383 7638 -6 1 1077 1700 173 102 3 chr4 64567332 64567657 -91062463 - ORR1B2 LTR MaLR 0 367 11 1 1077 970 133 6 6 chr4 64567777 64567951 -91062169 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 1 1077 500 264 0 37 chr4 64567968 64568102 -91062018 - B1_Mur4 SINE Alu 0 150 22 1 1077 258 244 24 24 chr4 64568374 64568458 -91061662 + GA-rich Low_complexity Low_complexity 5 88 0 1 1077 522 58 0 0 chr4 64568685 64568754 -91061366 - B1_Mur4 SINE Alu -2 148 80 1 1077 282 221 62 38 chr4 64568689 64568769 -91061351 - ID_B1 SINE B4 -6 218 137 1 1077 415 233 33 0 chr4 64569055 64569145 -91060975 - Lx8 LINE L1 -244 7229 7137 1 1077 335 351 31 23 chr4 64570594 64570746 -91059374 - B1F SINE Alu 0 149 1 1 1077 3445 70 0 0 chr4 64570966 64571407 -91058713 - L1_Mus1 LINE L1 -11 6556 6116 1 1077 264 172 0 0 chr4 64572449 64572507 -91057613 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1077 324 169 0 0 chr4 64572511 64572588 -91057532 + GA-rich Low_complexity Low_complexity 2 78 0 1 1077 232 345 12 12 chr4 64572589 64572674 -91057446 - RMER30 DNA MER1_type -117 85 1 1 1077 276 30 0 0 chr4 64573610 64573643 -91056477 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 1077 477 312 66 50 chr4 64573644 64573826 -91056294 + B3A SINE B2 14 198 0 1 1077 1293 213 31 24 chr4 64574628 64574922 -91055198 + Lx6 LINE L1 7142 7437 -23 1 1077 6084 83 2 2 chr4 64574922 64575738 -91054382 - L1Md_F2 LINE L1 -1 6581 5766 1 1077 269 276 41 0 chr4 64576373 64576471 -91053649 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 1 1077 194 337 123 13 chr4 64577698 64577827 -91052293 + MIRb SINE MIR 3 156 -112 1 1077 5482 251 48 78 chr4 64578554 64579820 -91050300 - Lx7 LINE L1 -364 7332 6020 1 1077 351 0 0 0 chr4 64579820 64579859 -91050261 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 1 1077 8395 206 44 43 chr4 64579859 64581337 -91048783 - Lx7 LINE L1 -1677 6019 4640 1 1077 324 0 0 0 chr4 64581337 64581373 -91048747 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1077 8395 196 44 35 chr4 64581373 64582150 -91047970 - Lx7 LINE L1 -1241 4639 3833 1 1077 3324 35 2 15 chr4 64582150 64582551 -91047569 + MTA_Mm LTR MaLR 1 396 0 1 1077 8395 196 44 35 chr4 64582551 64582585 -91047535 - Lx7 LINE L1 -2048 3832 3800 1 1077 1696 41 18 18 chr4 64582744 64582969 -91047151 + L1Md_F2 LINE L1 6358 6582 0 1 1077 209 347 0 14 chr4 64584084 64584157 -91045963 + MIRm SINE MIR 202 273 -3 1 1077 1389 324 141 12 chr4 64585231 64585897 -91044223 + Lx8 LINE L1 6364 7115 -358 1 1077 264 279 0 0 chr4 64585906 64585974 -91044146 + GA-rich Low_complexity Low_complexity 2 69 0 1 1077 23 0 0 0 chr4 64586442 64586465 -91043655 + AT_rich Low_complexity Low_complexity 1 23 0 1 1077 273 301 55 46 chr4 64586683 64586920 -91043200 + L1MA6 LINE L1 5793 6031 -269 1 1077 343 411 85 3 chr4 64587133 64587426 -91042694 - LTR16D LTR ERVL -2 649 333 1 1077 385 217 11 0 chr4 64587576 64587751 -91042369 + CT-rich Low_complexity Low_complexity 2 178 0 1 1077 232 163 0 0 chr4 64587752 64587795 -91042325 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 1 1077 244 188 20 22 chr4 64587802 64587859 -91042261 - MLT2B2 LTR ERVL -53 501 446 1 1077 373 312 77 7 chr4 64588065 64588220 -91041900 + Lx8 LINE L1 6837 7002 -471 1 1077 218 250 0 35 chr4 64588220 64588278 -91041842 - B2_Mm2 SINE B2 -139 56 1 1 1077 685 289 58 11 chr4 64588628 64588817 -91041303 - B3A SINE B2 0 198 1 1 1077 812 254 157 64 chr4 64588941 64589286 -91040834 + MTE2a LTR MaLR 1 377 -2 1 1077 432 0 0 0 chr4 64589412 64589460 -91040660 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1077 259 380 76 70 chr4 64590542 64591017 -91039103 + L2b LINE L2 2910 3387 0 1 1077 407 19 19 0 chr4 64591801 64591853 -91038267 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1 1077 356 224 52 19 chr4 64591888 64592043 -91038077 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 1 1077 7001 64 30 1 chr4 64592050 64592953 -91037167 - RLTR13B3 LTR ERVK 0 929 1 1 1077 375 378 110 13 chr4 64592974 64593202 -91036918 - MLT2B4 LTR ERVL -54 500 251 1 1077 613 377 98 0 chr4 64593225 64593501 -91036619 - MLT2B5 LTR ERVL -414 303 1 1 1077 210 222 0 0 chr4 64593548 64593602 -91036518 + CT-rich Low_complexity Low_complexity 2 55 0 1 1077 480 316 72 22 chr4 64593801 64593982 -91036138 + B3A SINE B2 1 190 -8 1 1077 866 280 5 0 chr4 64594106 64594317 -91035803 + B3 SINE B2 1 212 -4 1 1077 24 85 0 0 chr4 64595842 64595901 -91034219 + AT_rich Low_complexity Low_complexity 1 59 0 1 1077 438 297 55 25 chr4 64596038 64596238 -91033882 - MLT2B4 LTR ERVL -345 211 6 1 1077 2443 54 3 3 chr4 64596327 64596644 -91033476 - L1Md_F2 LINE L1 0 6582 6266 1 1077 211 193 0 34 chr4 64597400 64597442 -91032678 + T-rich Low_complexity Low_complexity 17 57 0 1 1077 1025 103 14 14 chr4 64597442 64597589 -91032531 - B1_Mus1 SINE Alu -1 147 1 1 1077 211 193 0 34 chr4 64597589 64597605 -91032515 + T-rich Low_complexity Low_complexity 1 16 0 1 1077 2006 294 75 37 chr4 64598006 64599219 -91030901 + L1M3 LINE L1 3061 4319 -1821 1 1077 289 294 16 72 chr4 64599309 64599503 -91030617 + L1M3 LINE L1 4314 4496 -1644 1 1077 1918 187 28 3 chr4 64599676 64600035 -91030085 - ORR1C1 LTR MaLR 0 378 11 1 1077 1077 265 88 23 chr4 64600107 64600458 -91029662 + ORR1D1 LTR MaLR 1 374 0 1 1077 1426 275 109 40 chr4 64600716 64601340 -91028780 - Lx8 LINE L1 -5 7468 6819 1 1077 426 85 0 0 chr4 64602345 64602404 -91027716 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1077 400 309 46 80 chr4 64602404 64602585 -91027535 + B3A SINE B2 39 211 -5 1 1077 187 347 95 0 chr4 64602679 64602774 -91027346 - MIRb SINE MIR -127 141 38 1 1077 441 329 98 58 chr4 64602870 64603299 -91026821 + MLT1C LTR MaLR 20 465 -2 1 1077 339 347 97 18 chr4 64603611 64603828 -91026292 - MIR SINE MIR -16 246 13 1 1077 306 302 38 0 chr4 64603997 64604103 -91026017 - L2c LINE L2 -234 3153 3044 1 1077 2679 10 0 0 chr4 64604326 64604630 -91025490 - L1Md_A LINE L1 0 6582 6279 1 1077 305 295 44 107 chr4 64605169 64605374 -91024746 + L1M4 LINE L1 5122 5313 -833 1 1077 1020 294 123 11 chr4 64605381 64606082 -91024038 + L1MB3 LINE L1 5405 6183 0 1 1077 43 47 0 0 chr4 64606130 64606194 -91023926 + AT_rich Low_complexity Low_complexity 1 64 0 1 1077 486 88 0 0 chr4 64606283 64606351 -91023769 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1077 192 416 10 0 chr4 64606597 64606698 -91023422 - L3 LINE CR1 -478 4011 3910 1 1077 194 324 109 45 chr4 64607289 64607399 -91022721 + MIRb SINE MIR 37 153 -115 1 1077 198 356 0 14 chr4 64607745 64607819 -91022301 - MIR SINE MIR -139 123 51 1 1077 23 0 0 0 chr4 64607908 64607931 -91022189 + AT_rich Low_complexity Low_complexity 1 23 0 1 1077 219 220 20 0 chr4 64610211 64610261 -91019859 - MIRc SINE MIR -135 133 83 1 1077 1443 23 0 0 chr4 64610278 64610449 -91019671 - L1Md_T LINE L1 -566 6016 5846 1 1077 3483 39 0 0 chr4 64610449 64610865 -91019255 + L1Md_A LINE L1 6167 6582 0 1 1077 23 0 0 0 chr4 64610865 64610888 -91019232 + AT_rich Low_complexity Low_complexity 1 23 0 1 1077 4709 121 30 12 chr4 64612176 64612952 -91017168 - Lx LINE L1 -21 6633 5844 1 1077 582 141 137 26 chr4 64612958 64613111 -91017009 - Lx3B LINE L1 -7 6969 6800 1 1077 2481 164 16 20 chr4 64613107 64613550 -91016570 + Lx3B LINE L1 6364 6804 -169 1 1077 1141 258 27 119 chr4 64614474 64614887 -91015233 - MTE2a LTR MaLR 0 379 5 1 1077 753 220 6 0 chr4 64614910 64615078 -91015042 - Lx9 LINE L1 -717 6927 6759 1 1077 579 300 31 24 chr4 64615086 64615373 -91014747 + Lx9 LINE L1 7235 7523 -121 1 1077 426 20 0 0 chr4 64615591 64615642 -91014478 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1077 466 253 11 66 chr4 64616329 64616511 -91013609 - Lx4B LINE L1 -5 7053 6882 1 1077 384 22 0 0 chr4 64617093 64617138 -91012982 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1077 198 0 0 0 chr4 64617138 64617160 -91012960 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1077 800 263 141 32 chr4 64617331 64617708 -91012412 - BLACKJACK DNA AcHobo -400 2544 2127 1 1077 279 79 0 0 chr4 64617901 64617939 -91012181 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1077 395 141 13 0 chr4 64617930 64618008 -91012112 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1078 424 308 44 15 chr4 64618837 64618972 -91011148 - B1F1 SINE Alu -1 148 10 1 1078 302 67 22 0 chr4 64619383 64619428 -91010692 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1078 462 305 46 0 chr4 64620362 64620513 -91009607 - RSINE1 SINE B4 -3 162 5 2 1078 1844 201 110 8 chr4 64620513 64620895 -91009225 + MTC LTR MaLR 1 421 0 2 1078 1262 258 36 37 chr4 64621955 64622484 -91007636 - Lx7 LINE L1 -1795 5901 5357 2 1078 579 307 128 19 chr4 64622882 64623201 -91006919 + MamRep434 DNA TcMar 68 421 -5 2 1078 404 335 46 63 chr4 64623658 64623833 -91006287 + MER20 DNA MER1_type 42 213 -6 2 1078 827 134 0 7 chr4 64624364 64624507 -91005613 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 2 1078 875 331 31 39 chr4 64624512 64624798 -91005322 + B4 SINE B4 5 288 -4 2 1078 1388 241 63 16 chr4 64625517 64626009 -91004111 - L1MA6 LINE L1 -307 5993 5479 2 1078 249 108 0 0 chr4 64627065 64627102 -91003018 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1078 386 266 169 39 chr4 64627444 64627698 -91002422 - Lx8 LINE L1 -1 7472 7186 2 1078 1103 109 0 0 chr4 64627798 64627945 -91002175 + B1_Mus2 SINE Alu 1 147 0 2 1078 3851 78 8 4 chr4 64627952 64628478 -91001642 + L1_Mus2 LINE L1 6038 6565 -1 2 1078 977 187 36 15 chr4 64628717 64628913 -91001207 + MTC LTR MaLR 214 413 -8 2 1078 546 241 151 0 chr4 64629181 64629413 -91000707 - Lx9 LINE L1 -7 7637 7371 2 1078 441 0 0 0 chr4 64629600 64629649 -91000471 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1078 536 163 40 20 chr4 64629651 64629751 -91000369 + RLTR25A LTR ERVK 1002 1103 0 2 1078 315 0 0 0 chr4 64629755 64629790 -91000330 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1078 1296 64 0 0 chr4 64630311 64630482 -90999638 + (GGAA)n Simple_repeat Simple_repeat 2 172 0 2 1078 677 354 59 42 chr4 64630544 64630901 -90999219 - MLT1A0 LTR MaLR -2 363 1 2 1078 2087 198 78 33 chr4 64631083 64631570 -90998550 - RLTR20B3 LTR ERVK -48 529 21 2 1078 3492 25 0 0 chr4 64632788 64633184 -90996936 - MTA_Mm LTR MaLR 0 396 1 2 1078 717 348 75 33 chr4 64633712 64634110 -90996010 - MLT1D LTR MaLR -14 491 77 2 1078 1304 240 66 16 chr4 64634137 64634442 -90995678 - MTEa LTR MaLR -11 368 49 2 1078 310 297 96 108 chr4 64635559 64635725 -90994395 - RSINE1 SINE B4 0 165 2 2 1078 226 349 55 28 chr4 64636149 64636258 -90993862 - MIRc SINE MIR -67 201 90 2 1078 210 208 0 0 chr4 64636880 64636928 -90993192 + GA-rich Low_complexity Low_complexity 1 48 0 2 1078 513 0 0 0 chr4 64637601 64637658 -90992462 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 2 1078 620 323 81 15 chr4 64638226 64638424 -90991696 + B3 SINE B2 6 216 0 2 1078 186 43 0 0 chr4 64638433 64638456 -90991664 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1078 204 358 63 0 chr4 64638651 64638746 -90991374 - MIR SINE MIR -3 259 159 2 1078 581 100 0 11 chr4 64638760 64638851 -90991269 - L1Md_F3 LINE L1 -572 6012 5923 2 1078 6386 55 108 0 chr4 64638847 64639828 -90990292 + L1Md_F3 LINE L1 4835 5934 -650 2 1078 502 299 0 7 chr4 64640503 64640648 -90989472 + RMER1B Other Other 63 206 -860 2 1078 329 301 30 82 chr4 64640615 64640790 -90989330 + RMER1C Other Other 607 767 -575 2 1078 3121 76 27 0 chr4 64640790 64641196 -90988924 + L1_Mus1 LINE L1 6151 6567 0 2 1078 329 282 26 34 chr4 64641196 64641292 -90988828 + RMER1C Other Other 768 825 -517 2 1078 1323 221 121 8 chr4 64641263 64641619 -90988501 + RMER1B Other Other 497 892 -174 2 1078 349 247 26 42 chr4 64641775 64641927 -90988193 + RMER1C Other Other 1213 1319 -23 2 1078 2735 47 3 0 chr4 64641927 64642267 -90987853 + L1Md_T LINE L1 6240 6580 -2 2 1078 349 242 31 31 chr4 64642267 64642287 -90987833 + RMER1C Other Other 1320 1340 -2 2 1078 1714 199 29 73 chr4 64642340 64642752 -90987368 - ORR1B1 LTR MaLR 0 394 1 2 1078 252 397 39 0 chr4 64642755 64642795 -90987325 + MIR SINE MIR 88 127 -135 2 1078 3177 58 8 0 chr4 64642795 64643188 -90986932 + MTA_Mm LTR MaLR 1 396 0 2 1078 252 397 39 0 chr4 64643188 64643303 -90986817 + MIR SINE MIR 128 248 -14 2 1078 267 31 0 0 chr4 64643373 64643405 -90986715 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1078 236 131 0 21 chr4 64643675 64643722 -90986398 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1078 337 378 7 7 chr4 64643741 64643885 -90986235 - MIR SINE MIR -116 146 3 2 1078 255 117 50 0 chr4 64644204 64644264 -90985856 - Lx4A LINE L1 -1 7057 6995 2 1078 466 295 176 44 chr4 64645025 64645344 -90984776 - MLT1A0 LTR MaLR -4 361 1 2 1078 36242 30 0 0 chr4 64645622 64652063 -90978057 - L1Md_T LINE L1 0 6585 48 2 1078 210 174 0 0 chr4 64652607 64652653 -90977467 + T-rich Low_complexity Low_complexity 1 46 0 2 1078 7520 55 2 4 chr4 64652683 64653884 -90976236 - L1Md_F2 LINE L1 -13 6569 5372 2 1078 544 294 59 41 chr4 64653909 64654252 -90975868 - MTD LTR MaLR -15 404 31 2 1078 201 175 25 0 chr4 64654971 64655011 -90975109 + GA-rich Low_complexity Low_complexity 3 43 0 2 1078 214 367 57 70 chr4 64655016 64655174 -90974946 - MIR SINE MIR -95 167 12 2 1078 915 272 39 13 chr4 64655235 64655541 -90974579 - L1ME4a LINE L1 -198 5926 5613 2 1078 226 235 98 0 chr4 64655844 64655895 -90974225 - MIRb SINE MIR -3 265 210 2 1078 1931 52 0 8 chr4 64656637 64656887 -90973233 - L1Md_F2 LINE L1 -200 6382 6135 2 1078 1151 92 0 6 chr4 64656888 64657062 -90973058 + L1Md_F2 LINE L1 6407 6579 -3 2 1078 269 264 41 131 chr4 64657784 64657906 -90972214 + RLTR25A LTR ERVK 472 582 -521 2 1078 485 295 7 28 chr4 64657800 64657943 -90972177 + ID_B1 SINE B4 78 217 -7 2 1078 797 203 0 0 chr4 64657816 64657949 -90972171 + B1_Mus1 SINE Alu 15 147 -1 2 1078 437 149 9 0 chr4 64657949 64658063 -90972057 + GA-rich Low_complexity Low_complexity 1 115 0 2 1078 650 127 25 0 chr4 64658321 64658436 -90971684 + B2_Mm2 SINE B2 2 124 -69 2 1078 293 82 20 0 chr4 64658463 64658512 -90971608 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1078 1618 292 26 11 chr4 64659864 64660332 -90969788 - Lx6 LINE L1 -27 7433 6959 2 1078 243 269 179 41 chr4 64662060 64662401 -90967719 - L1M4 LINE L1 -757 5389 5002 2 1078 225 0 0 0 chr4 64662424 64662449 -90967671 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1078 832 297 124 16 chr4 64662449 64662523 -90967597 + MTE2b LTR MaLR 20 105 -274 2 1078 537 16 0 0 chr4 64662523 64662585 -90967535 + (GAAAA)n Simple_repeat Simple_repeat 1 62 0 2 1078 832 297 124 16 chr4 64662585 64662825 -90967295 + MTE2b LTR MaLR 106 368 -11 2 1078 353 265 59 39 chr4 64662915 64663016 -90967104 - L1M4 LINE L1 -1424 4722 4620 2 1078 413 0 39 0 chr4 64663016 64663068 -90967052 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 2 1078 353 265 59 39 chr4 64663068 64663119 -90967001 - L1M4 LINE L1 -1527 4619 4567 2 1078 21 0 0 0 chr4 64663132 64663153 -90966967 + AT_rich Low_complexity Low_complexity 1 21 0 2 1078 313 279 63 63 chr4 64663159 64663270 -90966850 - PB1D7 SINE Alu -1 119 9 2 1078 4430 80 48 0 chr4 64665238 64665836 -90964284 - L1_Mus1 LINE L1 -1 6566 5940 2 1078 198 0 0 0 chr4 64665836 64665858 -90964262 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1078 1062 54 0 0 chr4 64666225 64666373 -90963747 - L1Md_A LINE L1 0 6582 6435 2 1078 2653 67 6 0 chr4 64666372 64666733 -90963387 - L1_Mus1 LINE L1 -612 5955 5593 2 1078 311 145 141 0 chr4 64666733 64666803 -90963317 - RMER19B LTR ERVK -67 835 768 2 1078 7681 93 11 2 chr4 64666803 64667939 -90962181 + L1_Mm LINE L1 1390 2535 -3348 2 1078 3049 174 102 95 chr4 64667939 64668715 -90961405 - RMER19B LTR ERVK -119 783 3 2 1078 1699 39 0 0 chr4 64668834 64669038 -90961082 + L1Md_A LINE L1 5383 5586 -297 2 1078 8687 19 0 0 chr4 64669039 64670034 -90960086 + L1Md_A LINE L1 5588 6582 0 2 1078 44 75 0 0 chr4 64670399 64670492 -90959628 + AT_rich Low_complexity Low_complexity 1 93 0 2 1078 302 328 30 0 chr4 64670660 64670791 -90959329 + L1MC3 LINE L1 6869 7003 -782 2 1078 816 324 71 17 chr4 64670802 64671154 -90958966 - Lx8 LINE L1 -175 7298 6928 2 1078 703 309 11 0 chr4 64671477 64671658 -90958462 + ORR1D2 LTR MaLR 1 183 -187 2 1078 1509 188 14 57 chr4 64671666 64672010 -90958110 - Lx7 LINE L1 0 7696 7367 2 1078 877 75 60 0 chr4 64672010 64672143 -90957977 + L1_Mus2 LINE L1 6426 6566 0 2 1078 36 0 0 0 chr4 64672164 64672200 -90957920 + AT_rich Low_complexity Low_complexity 1 36 0 2 1078 938 230 14 23 chr4 64672705 64672919 -90957201 - Lx7 LINE L1 -327 7369 7158 2 1078 31 26 0 0 chr4 64673021 64673059 -90957061 + AT_rich Low_complexity Low_complexity 1 38 0 2 1078 765 266 181 0 chr4 64673061 64673414 -90956706 - Lx7 LINE L1 -1087 6609 6193 2 1078 368 88 0 17 chr4 64673414 64673472 -90956648 + (CATA)n Simple_repeat Simple_repeat 4 60 0 2 1078 470 307 30 109 chr4 64673493 64673694 -90956426 - ORR1D2 LTR MaLR 0 370 186 2 1078 239 204 0 0 chr4 64673702 64673751 -90956369 + L1_Mur3 LINE L1 5505 5553 -327 2 1078 458 253 37 70 chr4 64673751 64673938 -90956182 - Lx7 LINE L1 -1529 6167 5987 2 1078 1606 151 102 37 chr4 64673940 64674264 -90955856 - RLTR9D LTR ERVK -58 345 1 2 1078 1977 186 11 8 chr4 64674284 64674737 -90955383 - Lx7 LINE L1 -1729 5967 5503 2 1078 466 286 71 116 chr4 64674740 64674938 -90955182 + ORR1D2 LTR MaLR 180 368 -2 2 1078 1929 277 43 74 chr4 64675138 64675852 -90954268 + Lx8 LINE L1 6234 6925 -548 2 1078 588 316 0 77 chr4 64676351 64676533 -90953587 - ID_B1 SINE B4 -13 211 44 2 1078 239 331 47 61 chr4 64676901 64677049 -90953071 + MIRb SINE MIR 99 244 -24 2 1078 2665 141 27 0 chr4 64677832 64678278 -90951842 - L1_Mur2 LINE L1 -1458 4419 3962 2 1078 642 60 0 0 chr4 64678279 64678362 -90951758 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1078 230 235 0 0 chr4 64678410 64678478 -90951642 + Lx2B LINE L1 6933 7000 0 2 1078 261 196 0 0 chr4 64679333 64679389 -90950731 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2 1078 436 372 109 9 chr4 64679507 64679973 -90950147 + L2 LINE L2 1914 2426 -993 2 1078 245 255 0 18 chr4 64680118 64680174 -90949946 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1078 234 128 0 0 chr4 64680182 64680221 -90949899 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1078 764 293 58 20 chr4 64680655 64681049 -90949071 - L1MA8 LINE L1 -13 6278 5870 2 1078 450 94 0 0 chr4 64681116 64681180 -90948940 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1078 225 0 0 0 chr4 64681278 64681303 -90948817 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1078 227 273 0 0 chr4 64681311 64681366 -90948754 - RMER15 LTR ERVL -108 467 413 2 1078 705 262 123 12 chr4 64681533 64681637 -90948483 - Lx6 LINE L1 -46 7650 7546 2 1078 234 62 0 0 chr4 64681637 64681669 -90948451 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1078 867 249 42 90 chr4 64681669 64682117 -90948003 - Lx6 LINE L1 -210 7250 6855 2 1078 839 282 135 14 chr4 64682120 64682408 -90947712 - Lx8 LINE L1 -342 7131 6809 3 1078 1595 32 0 5 chr4 64682542 64682733 -90947387 - B2_Mm1a SINE B2 -2 191 2 3 1078 5459 22 0 0 chr4 64683294 64683922 -90946198 - L1Md_T LINE L1 0 6582 5955 3 1078 242 240 189 31 chr4 64684040 64684199 -90945921 + L1M3 LINE L1 5410 5593 -575 3 1078 302 307 0 57 chr4 64684200 64684359 -90945761 + Lx6 LINE L1 7311 7460 0 3 1078 275 324 0 0 chr4 64684506 64684577 -90945543 + ID SINE ID 10 80 -144 3 1078 324 0 0 0 chr4 64684637 64684673 -90945447 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 3 1078 459 0 0 0 chr4 64686118 64686169 -90943951 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1078 3159 97 60 22 chr4 64686425 64686921 -90943199 + Lx3_Mus LINE L1 6472 6986 -23 3 1078 1389 41 4 0 chr4 64686921 64687189 -90942931 + (TAGA)n Simple_repeat Simple_repeat 1 268 0 3 1078 352 367 91 71 chr4 64687368 64687676 -90942444 + ORR1E LTR MaLR 6 319 -40 3 1078 34634 75 4 2 chr4 64687740 64692454 -90937666 - L1Md_F2 LINE L1 -12 6570 1858 3 1078 2976 45 3 0 chr4 64692454 64692810 -90937310 - IAPEY2_LTR LTR ERVK 0 357 1 3 1078 34634 131 30 10 chr4 64692810 64694365 -90935755 - L1Md_F2 LINE L1 -4026 1857 294 3 1078 1179 184 25 13 chr4 64694485 64694722 -90935398 - Lx4B LINE L1 -8 7050 6811 3 1078 527 219 215 15 chr4 64694981 64695241 -90934879 + Lx9 LINE L1 7326 7637 -7 3 1078 9960 157 3 8 chr4 64695329 64697049 -90933071 - Lx LINE L1 -27 5856 4145 3 1078 5052 127 23 18 chr4 64697049 64697866 -90932254 + Lx LINE L1 5833 6653 -1 3 1078 368 20 20 0 chr4 64698508 64698557 -90931563 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1078 1465 58 16 10 chr4 64698685 64698878 -90931242 + B2_Mm2 SINE B2 1 194 -1 3 1078 246 128 0 0 chr4 64699062 64699101 -90931019 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 3 1078 909 323 88 9 chr4 64699563 64700100 -90930020 - L1_Rod LINE L1 -504 5793 5166 3 1078 1915 132 40 25 chr4 64700100 64700426 -90929694 + Lx LINE L1 6317 6647 -7 3 1078 383 324 52 79 chr4 64700426 64700631 -90929489 - L1_Rod LINE L1 -915 5228 5027 3 1078 717 45 0 0 chr4 64700720 64700809 -90929311 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1078 416 302 152 43 chr4 64700816 64701072 -90929048 - B4A SINE B4 -8 284 1 3 1078 15705 28 1 1 chr4 64701865 64704393 -90925727 - L1Md_T LINE L1 0 6582 4058 3 1078 369 294 88 49 chr4 64704727 64704853 -90925267 + L1MA4 LINE L1 5458 5576 -595 3 1078 335 143 52 52 chr4 64704853 64704973 -90925147 + L1Md_A LINE L1 6480 6582 0 3 1078 369 312 76 70 chr4 64704973 64705322 -90924798 + L1MA4 LINE L1 5577 5919 -381 3 1078 3973 202 47 10 chr4 64705515 64706410 -90923710 - Lx5 LINE L1 0 7058 6076 3 1078 252 122 0 0 chr4 64706444 64706485 -90923635 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1078 638 335 50 61 chr4 64706517 64706794 -90923326 - B4A SINE B4 -14 278 5 3 1078 775 296 41 0 chr4 64707128 64707324 -90922796 + MTE-int LTR MaLR 1098 1301 -279 3 1078 1767 285 40 14 chr4 64707458 64707957 -90922163 - MTE-int LTR MaLR -1068 512 1 3 1078 227 364 58 72 chr4 64708154 64708293 -90921827 + LTR16A LTR ERVL 7 143 -308 3 1078 3038 215 97 19 chr4 64709728 64710459 -90919661 + Lx2B LINE L1 6200 6987 -13 3 1078 21 0 0 0 chr4 64710688 64710709 -90919411 + AT_rich Low_complexity Low_complexity 1 21 0 3 1078 204 296 74 0 chr4 64711656 64711710 -90918410 + MIRc SINE MIR 26 83 -185 3 1078 328 181 0 24 chr4 64712455 64712540 -90917580 + GA-rich Low_complexity Low_complexity 3 85 0 3 1078 1173 75 11 6 chr4 64712541 64712716 -90917404 + (GAA)n Simple_repeat Simple_repeat 2 177 0 3 1078 207 0 0 0 chr4 64712745 64712768 -90917352 + (GAA)n Simple_repeat Simple_repeat 2 24 0 3 1078 673 325 29 29 chr4 64712791 64713032 -90917088 + Lx8 LINE L1 6988 7228 -245 3 1078 1362 315 8 8 chr4 64713286 64713660 -90916460 - MTEa LTR MaLR -5 374 1 3 1078 401 367 48 9 chr4 64713677 64713905 -90916215 + MLT1C LTR MaLR 227 463 -4 3 1078 815 305 71 42 chr4 64715072 64715383 -90914737 + Lx7 LINE L1 6457 6776 -920 3 1078 746 306 58 26 chr4 64715409 64715718 -90914402 + Lx7 LINE L1 7045 7363 -333 3 1078 185 0 0 39 chr4 64715756 64715782 -90914338 + (TAA)n Simple_repeat Simple_repeat 3 27 0 3 1078 224 100 0 24 chr4 64716638 64716679 -90913441 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 3 1078 252 0 0 0 chr4 64716920 64716948 -90913172 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1078 8741 10 0 0 chr4 64717297 64718294 -90911826 - L1Md_A LINE L1 -833 5050 4054 3 1078 4787 5 29 0 chr4 64718273 64718830 -90911290 + L1Md_A LINE L1 5014 5586 -297 3 1078 8974 5 0 0 chr4 64718830 64719826 -90910294 + L1Md_A LINE L1 5587 6582 0 3 1078 284 297 51 59 chr4 64719951 64720069 -90910051 - MIRc SINE MIR -120 148 32 3 1078 243 61 0 0 chr4 64720677 64720710 -90909410 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1078 453 81 0 0 chr4 64720901 64720963 -90909157 + (CATA)n Simple_repeat Simple_repeat 2 63 0 3 1078 228 236 17 76 chr4 64720966 64721085 -90909035 + Charlie7 DNA MER1_type 2471 2582 -30 3 1078 4650 2 0 0 chr4 64721155 64721668 -90908452 + L1Md_A LINE L1 6070 6582 0 3 1078 284 297 51 59 chr4 64721791 64721909 -90908211 - MIRc SINE MIR -120 148 32 3 1078 243 61 0 0 chr4 64722517 64722550 -90907570 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1078 609 204 19 0 chr4 64722739 64722896 -90907224 + (TA)n Simple_repeat Simple_repeat 2 161 0 3 1078 223 377 77 6 chr4 64723288 64723456 -90906664 - MIRb SINE MIR -64 204 25 3 1078 182 139 0 104 chr4 64723807 64723855 -90906265 + MIR SINE MIR 144 186 -76 3 1078 230 180 0 16 chr4 64723867 64723929 -90906191 + GA-rich Low_complexity Low_complexity 1 61 0 3 1078 1250 93 3 0 chr4 64723929 64724231 -90905889 + (GAA)n Simple_repeat Simple_repeat 1 302 0 3 1078 208 301 48 0 chr4 64724244 64724327 -90905793 + GA-rich Low_complexity Low_complexity 3 89 0 3 1078 522 0 0 0 chr4 64724588 64724646 -90905474 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1078 294 87 0 0 chr4 64725114 64725160 -90904960 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1078 189 0 0 0 chr4 64725160 64725180 -90904940 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1078 198 0 0 0 chr4 64725181 64725203 -90904917 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1078 414 0 0 0 chr4 64725203 64725248 -90904872 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1078 244 319 111 21 chr4 64725492 64725636 -90904484 + RMER20B LTR ERVK 235 391 -236 3 1078 21 36 0 0 chr4 64725967 64725995 -90904125 + AT_rich Low_complexity Low_complexity 1 28 0 3 1078 430 330 21 36 chr4 64726891 64727083 -90903037 - MER102b DNA MER1_type -152 189 1 3 1078 237 180 80 0 chr4 64727272 64727322 -90902798 + Charlie18a DNA MER1_type 285 338 -4 3 1078 252 0 0 0 chr4 64727797 64727825 -90902295 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1078 186 189 0 0 chr4 64727837 64727874 -90902246 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 1078 6956 88 114 2 chr4 64727874 64728939 -90901181 - Lx3_Mus LINE L1 -12 6997 5814 3 1078 328 303 93 40 chr4 64729037 64729188 -90900932 + ORR1D1 LTR MaLR 6 164 -210 3 1078 462 326 94 25 chr4 64729653 64729930 -90900190 - MLT1B LTR MaLR -4 386 91 3 1078 297 300 118 20 chr4 64729965 64730067 -90900053 + B1F1 SINE Alu 38 149 0 3 1078 189 0 0 0 chr4 64730067 64730088 -90900032 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1078 189 107 0 0 chr4 64731293 64731321 -90898799 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1078 1589 115 4 30 chr4 64731399 64731667 -90898453 - L1_Mus4 LINE L1 -2 6634 6374 3 1078 4350 63 5 0 chr4 64731675 64732227 -90897893 - L1_Mus1 LINE L1 -1 6566 6012 3 1078 5591 118 52 2 chr4 64732227 64733705 -90896415 - L1_Mus4 LINE L1 -263 6373 4857 3 1078 2865 171 2 2 chr4 64733816 64734301 -90895819 + Lx2 LINE L1 5754 6238 -759 3 1078 1931 172 9 6 chr4 64734299 64734632 -90895488 + Lx2A1 LINE L1 6670 7003 -5 3 1078 285 29 0 0 chr4 64734734 64734768 -90895352 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1078 243 199 84 0 chr4 64734857 64734988 -90895132 + (TA)n Simple_repeat Simple_repeat 2 143 0 3 1078 649 0 25 0 chr4 64735534 64735615 -90894505 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 1078 2025 295 95 37 chr4 64735788 64736517 -90893603 - Lx6 LINE L1 -37 7423 6653 3 1078 235 347 102 0 chr4 64736522 64736620 -90893500 - MLT1H1 LTR MaLR -88 467 360 3 1078 317 306 61 61 chr4 64737103 64737284 -90892836 - CYRA11_Mm Unknown Y-chromosome -265 352 172 3 1078 670 171 57 0 chr4 64737145 64737285 -90892835 + URR1A DNA MER1_type 79 226 0 3 1078 1343 284 62 143 chr4 64737379 64738013 -90892107 - Lx8 LINE L1 -600 6873 6292 3 1078 1258 80 40 6 chr4 64738240 64738416 -90891704 + B2_Mm2 SINE B2 3 184 -11 3 1078 23 0 0 0 chr4 64741146 64741169 -90888951 + AT_rich Low_complexity Low_complexity 1 23 0 3 1078 23 0 0 0 chr4 64741182 64741205 -90888915 + AT_rich Low_complexity Low_complexity 1 23 0 3 1078 1878 162 72 17 chr4 64741944 64742290 -90887830 - ORR1B2 LTR MaLR -2 365 1 3 1078 486 0 0 0 chr4 64742672 64742726 -90887394 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 1078 1119 214 4 4 chr4 64743672 64743897 -90886223 + URR1B DNA MER1_type 1 225 0 3 1078 218 372 26 46 chr4 64743942 64744094 -90886026 + MIRb SINE MIR 75 223 -45 3 1078 230 358 74 0 chr4 64744745 64744840 -90885280 - MLT1H LTR MaLR -12 399 298 3 1078 1075 182 43 5 chr4 64745043 64745253 -90884867 + Lx4A LINE L1 6839 7056 -2 3 1078 396 59 0 0 chr4 64745490 64745541 -90884579 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 1078 268 364 32 16 chr4 64746339 64746462 -90883658 + MIRc SINE MIR 33 157 -111 3 1078 379 411 59 8 chr4 64746769 64747024 -90883096 - MLT1H LTR MaLR -279 270 3 3 1078 822 334 76 44 chr4 64747168 64747644 -90882476 - Lx8 LINE L1 -20 7453 6963 3 1078 242 426 11 29 chr4 64748567 64748741 -90881379 + MIRb SINE MIR 45 215 -53 4 134 299 213 13 0 chr4 64749520 64749595 -90880525 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1079 263 276 0 0 chr4 64751620 64751678 -90878442 + GA-rich Low_complexity Low_complexity 3 60 0 4 1079 1466 249 44 8 chr4 64752019 64752380 -90877740 + ORR1D1 LTR MaLR 1 374 0 4 1079 194 206 16 0 chr4 64752432 64752495 -90877625 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1079 1988 278 117 47 chr4 64752701 64752991 -90877129 - Lx6 LINE L1 -168 7292 7049 4 1079 572 40 13 0 chr4 64752991 64753066 -90877054 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 1079 1988 267 90 24 chr4 64753066 64753732 -90876388 - Lx6 LINE L1 -412 7048 6065 4 1079 404 314 62 32 chr4 64753747 64754056 -90876064 + L1MD2 LINE L1 4776 5093 -1053 4 1079 377 306 83 61 chr4 64754095 64754325 -90875795 + L1MC LINE L1 5066 5300 -846 4 1079 628 301 37 11 chr4 64754378 64754670 -90875450 + L1MD2 LINE L1 5357 5659 -700 4 1079 851 307 71 24 chr4 64754704 64755041 -90875079 + MLT1A0 LTR MaLR 10 362 -3 4 1079 386 287 129 68 chr4 64755201 64755541 -90874579 + L1MD2 LINE L1 5911 6271 -88 4 1079 594 0 0 0 chr4 64755664 64755730 -90874390 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1079 411 232 4 66 chr4 64755732 64755853 -90874267 - MT2A LTR ERVL -124 477 242 4 1079 633 51 184 0 chr4 64755877 64755975 -90874145 - L1_Mus2 LINE L1 -105 6461 6346 4 1079 582 89 0 0 chr4 64755975 64756065 -90874055 + L1_Mus2 LINE L1 6469 6558 -8 4 1079 636 81 0 0 chr4 64756065 64756152 -90873968 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 4 1079 455 171 24 0 chr4 64756154 64756236 -90873884 - MT2A LTR ERVL -449 84 1 4 1079 267 225 75 0 chr4 64756578 64756658 -90873462 + Tigger7 DNA MER2_type 2340 2425 -66 4 1079 214 269 30 0 chr4 64756798 64756865 -90873255 - B1_Mur2 SINE Alu 0 149 81 4 1079 551 300 82 14 chr4 64756993 64757213 -90872907 + Tigger7 DNA MER2_type 2257 2491 0 4 1079 471 18 0 0 chr4 64757495 64757551 -90872569 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1079 317 340 38 66 chr4 64757626 64757961 -90872159 - Lx8 LINE L1 -130 7514 7044 4 1079 302 276 24 65 chr4 64758153 64758277 -90871843 + Lx8 LINE L1 6887 7005 -468 4 1079 342 365 66 22 chr4 64758316 64758543 -90871577 + LTR16C LTR ERVL 252 488 -1 4 1079 297 252 50 10 chr4 64758593 64758693 -90871427 - L1MB2 LINE L1 -161 6010 5907 4 1079 554 0 15 0 chr4 64758797 64758863 -90871257 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1079 528 30 0 0 chr4 64758863 64758928 -90871192 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1079 1388 160 54 192 chr4 64759659 64760085 -90870035 - ORR1B2 LTR MaLR 0 367 1 4 1079 1456 285 89 26 chr4 64761551 64762300 -90867820 + L1_Mur3 LINE L1 3353 4115 -1765 4 1079 1942 143 35 12 chr4 64762304 64762643 -90867477 + ORR1B1 LTR MaLR 1 347 -47 4 1079 7358 86 5 6 chr4 64762643 64763868 -90866252 + L1_Mus1 LINE L1 5338 6565 -2 4 1079 287 167 37 0 chr4 64763974 64764028 -90866092 + ORR1B1 LTR MaLR 312 367 0 4 1079 759 200 7 0 chr4 64764079 64764219 -90865901 + B1_Mus1 SINE Alu 3 143 -5 4 1079 504 270 0 0 chr4 64764245 64764393 -90865727 + L1_Mur3 LINE L1 4153 4300 -1580 4 1079 979 50 0 0 chr4 64765797 64765916 -90864204 - L1Md_F2 LINE L1 -484 6098 5980 4 1079 3713 65 0 6 chr4 64765916 64766396 -90863724 + L1Md_F2 LINE L1 6106 6582 0 4 1079 734 216 22 22 chr4 64766606 64766793 -90863327 + B3 SINE B2 1 187 -8 4 1079 3633 88 12 0 chr4 64766987 64767473 -90862647 + L1_Mus1 LINE L1 6076 6567 0 4 1079 473 309 55 96 chr4 64767554 64767847 -90862273 + MLT1E3 LTR MaLR 344 624 0 4 1079 1279 275 48 82 chr4 64768248 64769068 -90861052 + L1M2 LINE L1 3872 4663 -1480 4 1079 327 285 45 19 chr4 64769075 64769229 -90860891 + L1MB3 LINE L1 5997 6154 -29 4 1079 597 153 24 0 chr4 64769319 64769443 -90860677 + GA-rich Low_complexity Low_complexity 2 128 0 4 1079 396 281 119 88 chr4 64769545 64769771 -90860349 - B4 SINE B4 -10 282 50 4 1079 375 333 122 0 chr4 64770088 64770292 -90859828 - MIR SINE MIR -27 235 7 4 1079 299 113 0 19 chr4 64770369 64770423 -90859697 + (GGGAGA)n Simple_repeat Simple_repeat 1 53 0 4 1079 21 0 0 0 chr4 64770608 64770629 -90859491 + AT_rich Low_complexity Low_complexity 1 21 0 4 1079 290 327 74 9 chr4 64770684 64770792 -90859328 - PB1D10 SINE Alu -2 115 1 4 1079 22 35 0 0 chr4 64771754 64771783 -90858337 + AT_rich Low_complexity Low_complexity 1 29 0 4 1079 310 214 19 19 chr4 64772305 64772385 -90857735 - Lx9 LINE L1 -8 7636 7556 4 1079 519 17 0 0 chr4 64772385 64772445 -90857675 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1079 310 214 19 19 chr4 64772445 64772469 -90857651 - Lx9 LINE L1 -89 7555 7532 4 1079 358 316 22 0 chr4 64774103 64774239 -90855881 - B1F SINE Alu -8 141 3 4 1079 630 260 23 34 chr4 64774473 64774648 -90855472 + B3A SINE B2 1 173 -25 4 1079 230 326 0 20 chr4 64775313 64775413 -90854707 + GA-rich Low_complexity Low_complexity 2 99 0 4 1079 767 286 14 9 chr4 64775620 64775835 -90854285 - MIRb SINE MIR -21 247 32 4 1079 206 62 31 0 chr4 64777853 64777885 -90852235 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1079 23 0 0 0 chr4 64778223 64778246 -90851874 + AT_rich Low_complexity Low_complexity 1 23 0 4 1079 243 0 0 0 chr4 64779501 64779528 -90850592 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 4 1079 1096 71 0 14 chr4 64779528 64779663 -90850457 - B1_Mm SINE Alu -12 135 1 4 1079 24 0 0 0 chr4 64780418 64780442 -90849678 + AT_rich Low_complexity Low_complexity 1 24 0 4 1079 449 105 0 26 chr4 64780970 64781048 -90849072 + (TCCC)n Simple_repeat Simple_repeat 3 78 0 4 1079 215 132 0 26 chr4 64781070 64781109 -90849011 + C-rich Low_complexity Low_complexity 3 40 0 4 1079 327 315 84 30 chr4 64782650 64782781 -90847339 - RSINE1 SINE B4 -24 141 4 4 1079 21 0 0 0 chr4 64784075 64784096 -90846024 + AT_rich Low_complexity Low_complexity 1 21 0 4 1079 391 329 7 14 chr4 64784469 64784614 -90845506 + GA-rich Low_complexity Low_complexity 1 144 0 4 1079 35 92 0 0 chr4 64785671 64785769 -90844351 + GC_rich Low_complexity Low_complexity 1 98 0 4 1079 297 0 0 0 chr4 64787208 64787241 -90842879 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1079 387 0 0 0 chr4 64787400 64787443 -90842677 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1079 420 77 0 0 chr4 64787443 64787507 -90842613 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1079 405 0 0 0 chr4 64788739 64788784 -90841336 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1079 429 81 0 0 chr4 64789076 64789138 -90840982 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1079 340 309 58 18 chr4 64792775 64792946 -90837174 + MIR SINE MIR 13 190 -72 4 1079 22 0 0 0 chr4 64793488 64793510 -90836610 + AT_rich Low_complexity Low_complexity 1 22 0 4 1079 198 361 14 70 chr4 64793666 64793809 -90836311 + MIR3 SINE MIR 72 206 -2 4 1079 704 297 83 29 chr4 64794420 64794634 -90835486 + B4 SINE B4 1 215 -77 4 1079 279 0 0 0 chr4 64794634 64794665 -90835455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1079 704 297 83 29 chr4 64794665 64794727 -90835393 + B4 SINE B4 216 291 -1 4 1079 270 0 0 0 chr4 64794758 64794788 -90835332 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1079 203 167 0 0 chr4 64796184 64796220 -90833900 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1079 542 103 11 0 chr4 64797064 64797151 -90832969 + (TGAA)n Simple_repeat Simple_repeat 4 91 0 4 1079 234 307 48 29 chr4 64799250 64799354 -90830766 - L2a LINE L2 -50 3376 3271 4 1079 320 317 53 48 chr4 64801820 64802009 -90828111 - MER20 DNA MER1_type -8 211 22 4 1079 374 0 22 0 chr4 64803875 64803921 -90826199 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1079 200 345 68 17 chr4 64804258 64804376 -90825744 - L2b LINE L2 0 3375 3252 4 1079 183 114 0 0 chr4 64805345 64805380 -90824740 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1079 230 291 148 62 chr4 64807932 64808141 -90821979 - MIRb SINE MIR -4 264 38 4 1079 306 296 50 55 chr4 64808151 64808351 -90821769 - MIRb SINE MIR -20 248 50 4 1079 922 157 0 11 chr4 64808384 64808564 -90821556 + CT-rich Low_complexity Low_complexity 3 180 0 4 1079 268 141 12 25 chr4 64808552 64808632 -90821488 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 4 1079 312 27 0 0 chr4 64808637 64808674 -90821446 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1079 258 226 0 0 chr4 64808699 64808752 -90821368 - ORR1C1 LTR MaLR -3 375 323 4 1079 614 267 21 74 chr4 64808752 64809044 -90821076 + Lx4B LINE L1 6684 7053 -5 4 1079 787 194 162 39 chr4 64809045 64809315 -90820805 - ORR1C1 LTR MaLR -56 338 1 4 1079 447 155 0 0 chr4 64809316 64809400 -90820720 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1079 321 26 0 0 chr4 64809742 64809780 -90820340 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1079 678 342 57 11 chr4 64811880 64812246 -90817874 - MLT1B LTR MaLR -6 384 2 4 1079 302 330 9 57 chr4 64813027 64813133 -90816987 + RSINE1 SINE B4 8 108 -57 4 1079 197 298 17 17 chr4 64814210 64814268 -90815852 - MIR SINE MIR -70 138 81 4 1079 275 87 0 42 chr4 64815742 64815790 -90814330 + (CATA)n Simple_repeat Simple_repeat 4 49 0 4 1079 378 0 0 0 chr4 64815790 64815832 -90814288 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1079 33 56 0 0 chr4 64818090 64818144 -90811976 + AT_rich Low_complexity Low_complexity 1 54 0 4 1079 226 291 69 11 chr4 64818196 64818283 -90811837 + B1_Mus1 SINE Alu 19 110 -38 4 1079 298 303 0 0 chr4 64818331 64818397 -90811723 + ID2 SINE ID 12 77 -6 4 1079 451 298 169 26 chr4 64819127 64819358 -90810762 + B4A SINE B4 1 264 -28 4 1079 492 18 0 0 chr4 64819365 64819422 -90810698 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1079 514 75 25 0 chr4 64820917 64820997 -90809123 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1079 487 142 9 9 chr4 64821121 64821228 -90808892 + CT-rich Low_complexity Low_complexity 2 108 0 4 1079 359 308 33 0 chr4 64821353 64821444 -90808676 - B3A SINE B2 -98 100 7 4 1079 726 124 0 0 chr4 64821620 64821741 -90808379 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 4 1079 485 119 0 10 chr4 64821741 64821843 -90808277 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 4 1079 2061 280 132 11 chr4 64821843 64822584 -90807536 - Lx8 LINE L1 -169 7304 6474 5 1079 464 146 0 11 chr4 64823422 64823512 -90806608 + CT-rich Low_complexity Low_complexity 4 92 0 5 1079 249 57 0 0 chr4 64823653 64823688 -90806432 + (CTA)n Simple_repeat Simple_repeat 3 37 0 5 1079 579 53 0 0 chr4 64824062 64824137 -90805983 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1079 716 327 28 18 chr4 64824203 64824486 -90805634 - B4 SINE B4 0 292 7 5 1079 399 21 0 0 chr4 64824691 64824739 -90805381 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 1079 261 278 43 22 chr4 64825571 64825663 -90804457 + MIRc SINE MIR 62 155 -113 5 1079 373 347 68 27 chr4 64825920 64826139 -90803981 + MIRb SINE MIR 14 241 -27 5 1079 213 156 0 43 chr4 64827960 64828007 -90802113 + CT-rich Low_complexity Low_complexity 5 49 0 5 1079 1715 5 10 0 chr4 64829029 64829225 -90800895 + L1Md_A LINE L1 6383 6580 -2 5 1079 198 0 0 0 chr4 64829282 64829304 -90800816 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1079 267 343 0 0 chr4 64831763 64831868 -90798252 - MIRc SINE MIR -110 158 54 5 1079 641 315 82 53 chr4 64834342 64834661 -90795459 - ORR1D2 LTR MaLR 0 370 43 5 1079 872 67 8 0 chr4 64835330 64835450 -90794670 + (GA)n Simple_repeat Simple_repeat 1 121 0 5 1079 417 41 40 26 chr4 64836269 64836345 -90793775 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 5 1079 395 40 25 50 chr4 64836714 64836794 -90793326 + (CAAAAA)n Simple_repeat Simple_repeat 2 79 0 5 1079 269 311 45 54 chr4 64837579 64837700 -90792420 - MIR SINE MIR -122 146 26 5 1079 240 315 96 89 chr4 64838344 64838501 -90791619 - MLT1H LTR MaLR -75 474 317 5 1079 939 18 0 0 chr4 64838614 64838723 -90791397 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1079 189 0 0 0 chr4 64838723 64838743 -90791377 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1079 348 316 169 0 chr4 64838824 64838960 -90791160 + MER20 DNA MER1_type 61 219 0 5 1079 192 342 12 62 chr4 64839172 64839253 -90790867 + L3b LINE CR1 406 482 0 5 1079 317 24 24 0 chr4 64839991 64840033 -90790087 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1079 229 362 43 0 chr4 64840435 64840529 -90789591 - MER5A1 DNA MER1_type -23 143 46 5 1079 1367 259 44 36 chr4 64840707 64841091 -90789029 - MTD LTR MaLR -15 404 18 5 1079 318 186 0 0 chr4 64842473 64842559 -90787561 + A-rich Low_complexity Low_complexity 1 86 0 5 1079 257 333 105 8 chr4 64843212 64843345 -90786775 - MIRc SINE MIR -18 250 105 5 1079 772 262 5 5 chr4 64844369 64844561 -90785559 + MER3 DNA MER1_type 9 200 -9 5 1079 870 119 0 0 chr4 64844654 64844788 -90785332 + (TA)n Simple_repeat Simple_repeat 1 134 0 5 1079 182 359 0 0 chr4 64844825 64844917 -90785203 - MIR SINE MIR -89 173 82 5 1079 192 325 72 0 chr4 64845380 64845463 -90784657 - L2a LINE L2 -5 3421 3333 5 1079 352 51 34 0 chr4 64845703 64845762 -90784358 + (CAAAAA)n Simple_repeat Simple_repeat 1 61 0 5 1079 3455 76 31 15 chr4 64845989 64846469 -90783651 + L1Md_F2 LINE L1 6091 6578 -4 5 1079 228 310 52 26 chr4 64846643 64846759 -90783361 - MIR SINE MIR -68 194 76 5 1079 378 0 0 0 chr4 64847633 64847675 -90782445 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1079 2105 211 19 7 chr4 64849008 64849419 -90780701 + MTD LTR MaLR 1 416 -3 5 1079 374 277 29 7 chr4 64849806 64849944 -90780176 + (TGAA)n Simple_repeat Simple_repeat 2 142 0 5 1079 621 256 23 0 chr4 64850793 64850922 -90779198 + B1_Mur1 SINE Alu 10 141 -8 5 1079 293 327 64 52 chr4 64851652 64851889 -90778231 - MIRb SINE MIR -13 255 21 5 1079 814 251 70 44 chr4 64851995 64852337 -90777783 + L1MA7 LINE L1 5317 5667 -624 5 1079 367 316 112 12 chr4 64852337 64852596 -90777524 + B4A SINE B4 1 285 -7 5 1079 1189 272 34 51 chr4 64852677 64853333 -90776787 + L1MA7 LINE L1 5652 6300 0 5 1079 331 298 81 0 chr4 64854750 64854874 -90775246 - MER105 DNA DNA -3 201 68 5 1079 406 297 7 28 chr4 64854976 64855118 -90775002 + MER3 DNA MER1_type 70 208 -1 5 1079 441 0 0 0 chr4 64855201 64855250 -90774870 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1079 987 129 0 0 chr4 64856210 64856388 -90773732 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 1079 315 232 14 0 chr4 64857257 64857326 -90772794 - MIR3 SINE MIR -15 193 124 5 1079 199 276 65 13 chr4 64858971 64859048 -90771072 - L3 LINE CR1 -1 4488 4408 5 1079 456 315 27 7 chr4 64859444 64859594 -90770526 + Charlie1 DNA MER1_type 52 204 -2577 5 1079 2044 284 75 16 chr4 64859877 64860629 -90769491 + RCHARR1 DNA MER1_type 59 854 -120 5 1079 262 290 0 39 chr4 64862240 64862344 -90767776 + CT-rich Low_complexity Low_complexity 5 104 0 5 1079 491 292 29 0 chr4 64862581 64862752 -90767368 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 5 1079 221 352 48 32 chr4 64862769 64862895 -90767225 + L2 LINE L2 2795 2922 -497 5 1079 1378 70 27 0 chr4 64864330 64864515 -90765605 + B2_Mm1t SINE B2 1 190 -3 5 1079 241 294 35 52 chr4 64867185 64867300 -90762820 - MLT1A1 LTR MaLR -295 113 1 5 1079 183 224 20 39 chr4 64867586 64867637 -90762483 - L2c LINE L2 -3 3384 3335 5 1079 333 319 65 89 chr4 64867834 64868126 -90761994 + MamRep434 DNA TcMar 76 360 -66 5 1079 215 299 104 69 chr4 64868315 64868459 -90761661 + MIR3 SINE MIR 4 152 -56 5 1079 250 318 53 23 chr4 64868679 64868811 -90761309 + MER5A1 DNA MER1_type 31 166 0 5 1079 5604 106 8 12 chr4 64868873 64869710 -90760410 - L1_Mus3 LINE L1 -16 6622 5789 5 1079 767 271 62 33 chr4 64870086 64870296 -90759824 - B3 SINE B2 0 216 1 5 1079 180 286 94 16 chr4 64871405 64871469 -90758651 - MIR SINE MIR -181 81 13 5 1079 341 167 13 0 chr4 64871762 64871840 -90758280 + (CATA)n Simple_repeat Simple_repeat 2 80 0 5 1079 630 39 0 0 chr4 64873011 64873088 -90757032 + (TTTTC)n Simple_repeat Simple_repeat 3 79 0 5 1079 215 281 115 68 chr4 64873211 64873402 -90756718 - L2c LINE L2 -5 3382 3183 5 1079 194 174 22 0 chr4 64873515 64873561 -90756559 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 5 1079 291 114 0 0 chr4 64874598 64874642 -90755478 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1079 485 162 115 36 chr4 64874642 64874834 -90755286 - RMER17C LTR ERVK -135 275 69 5 1079 322 299 153 54 chr4 64874862 64875101 -90755019 + MTEa LTR MaLR 6 270 -109 5 1079 992 96 0 0 chr4 64876718 64876853 -90753267 + B1_Mus1 SINE Alu 2 136 -12 5 1079 207 0 0 0 chr4 64876858 64876881 -90753239 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1079 387 0 0 0 chr4 64877639 64877682 -90752438 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1079 227 93 23 0 chr4 64878040 64878083 -90752037 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1079 251 379 137 0 chr4 64878455 64878608 -90751512 - MIR3 SINE MIR -21 187 14 5 1079 1206 248 63 19 chr4 64878776 64879092 -90751028 - MER121 Unknown Unknown -12 400 71 5 1079 249 33 0 0 chr4 64879528 64879558 -90750562 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1080 249 33 0 0 chr4 64881223 64881253 -90748867 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1080 453 36 0 0 chr4 64881866 64881921 -90748199 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 5 1080 615 195 81 0 chr4 64881921 64882044 -90748076 - B1_Mur4 SINE Alu -12 138 6 5 1080 21 36 0 0 chr4 64882197 64882225 -90747895 + AT_rich Low_complexity Low_complexity 1 28 0 5 1080 262 325 26 0 chr4 64882423 64882500 -90747620 + ID4_ SINE ID 2 80 -3 5 1080 22 0 0 0 chr4 64882937 64882959 -90747161 + AT_rich Low_complexity Low_complexity 1 22 0 5 1080 212 133 0 43 chr4 64883342 64883389 -90746731 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1080 236 342 26 26 chr4 64883391 64883469 -90746651 + ID2 SINE ID 6 83 0 5 1080 579 341 25 21 chr4 64884063 64884342 -90745778 + B4A SINE B4 4 283 -9 5 1080 483 18 0 0 chr4 64884386 64884442 -90745678 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 5 1080 493 268 58 127 chr4 64884516 64884721 -90745399 + B3A SINE B2 8 198 0 5 1080 750 319 68 12 chr4 64884871 64885323 -90744797 + L1M5 LINE L1 5255 5729 -511 5 1080 278 242 0 0 chr4 64887054 64887120 -90743000 + GA-rich Low_complexity Low_complexity 2 67 0 5 1080 507 316 29 22 chr4 64887120 64887256 -90742864 - B1F SINE Alu -12 137 1 5 1080 351 0 0 0 chr4 64887896 64887935 -90742185 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1080 236 120 20 0 chr4 64888430 64888480 -90741640 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1080 1198 55 0 0 chr4 64888482 64888628 -90741492 - B1_Mm SINE Alu 0 147 2 5 1080 396 0 0 0 chr4 64888643 64888687 -90741433 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1080 8019 55 5 5 chr4 64888785 64889963 -90740157 - L1Md_F2 LINE L1 0 6582 5406 5 1080 312 304 0 23 chr4 64891475 64891603 -90738517 + MIRb SINE MIR 103 227 -41 5 1080 358 289 211 31 chr4 64892700 64892866 -90737254 + B3A SINE B2 10 200 -16 5 1080 699 225 169 27 chr4 64892870 64893053 -90737067 + B3 SINE B2 2 210 -6 5 1080 22 0 0 0 chr4 64893062 64893084 -90737036 + AT_rich Low_complexity Low_complexity 1 22 0 5 1080 263 290 0 0 chr4 64893091 64893153 -90736967 + PB1D9 SINE Alu 1 62 -58 5 1080 703 306 86 62 chr4 64893480 64893981 -90736139 + Charlie25 DNA MER1_type 771 1283 -1241 5 1080 214 320 31 88 chr4 64894076 64894107 -90736013 - B2_Mm1a SINE B2 -9 184 150 6 1080 420 123 0 0 chr4 64894107 64894180 -90735940 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1080 214 320 31 88 chr4 64894180 64894340 -90735780 - B2_Mm1a SINE B2 -44 149 4 6 1080 1434 66 11 0 chr4 64894728 64894910 -90735210 - B2_Mm1t SINE B2 -8 185 2 6 1080 1935 198 27 5 chr4 64894929 64895299 -90734821 - ORR1C1 LTR MaLR 0 378 1 6 1080 198 341 64 32 chr4 64896215 64896309 -90733811 - L2c LINE L2 -145 3242 3146 6 1080 448 308 38 0 chr4 64897055 64897214 -90732906 + MER3 DNA MER1_type 2 166 -43 6 1080 268 48 79 16 chr4 64897922 64897985 -90732135 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 6 1080 714 308 35 23 chr4 64898006 64898262 -90731858 + B4 SINE B4 26 284 -8 6 1080 243 245 0 0 chr4 64898321 64898374 -90731746 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1080 1117 83 0 24 chr4 64898374 64898620 -90731500 + (GAAA)n Simple_repeat Simple_repeat 1 239 0 6 1080 471 35 0 0 chr4 64900229 64900286 -90729834 + (TTA)n Simple_repeat Simple_repeat 2 58 0 6 1080 25 0 0 0 chr4 64900376 64900401 -90729719 + AT_rich Low_complexity Low_complexity 1 25 0 6 1080 549 0 0 0 chr4 64900528 64900589 -90729531 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1080 488 241 28 0 chr4 64901582 64901690 -90728430 + B1_Mur3 SINE Alu 7 117 -32 6 1080 206 0 69 0 chr4 64901696 64901725 -90728395 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 6 1080 805 68 8 8 chr4 64903222 64903340 -90726780 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 6 1080 212 170 0 19 chr4 64903370 64903424 -90726696 + CT-rich Low_complexity Low_complexity 2 54 0 6 1080 185 343 65 14 chr4 64905408 64905547 -90724573 - MIR SINE MIR -81 181 36 6 1080 187 282 56 45 chr4 64905640 64905729 -90724391 - MIRm SINE MIR -115 161 72 6 1080 285 29 0 0 chr4 64905849 64905883 -90724237 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1080 455 61 30 0 chr4 64907270 64907336 -90722784 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 6 1080 761 221 8 100 chr4 64908910 64909151 -90720969 + URR1B DNA MER1_type 4 222 -3 6 1080 44 0 0 0 chr4 64909316 64909360 -90720760 + AT_rich Low_complexity Low_complexity 1 44 0 6 1080 2204 189 39 44 chr4 64911764 64912283 -90717837 - RLTR24 LTR ERV1 0 529 14 6 1080 497 16 16 0 chr4 64912515 64912577 -90717543 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1080 303 28 0 0 chr4 64912664 64912700 -90717420 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1080 540 77 11 21 chr4 64912700 64912793 -90717327 + (TA)n Simple_repeat Simple_repeat 1 92 0 6 1080 236 348 88 52 chr4 64914057 64914251 -90715869 + MIRb SINE MIR 46 246 -22 6 1080 188 402 9 9 chr4 64915644 64915757 -90714363 + MIR3 SINE MIR 72 184 -24 6 1080 410 174 0 20 chr4 64916667 64916767 -90713353 + CT-rich Low_complexity Low_complexity 3 100 0 6 1080 237 312 16 0 chr4 64916776 64916840 -90713280 + polypyrimidine Low_complexity Low_complexity 4 68 0 6 1080 1369 260 14 20 chr4 64917664 64918021 -90712099 + MTD LTR MaLR 10 364 -55 6 1080 396 293 146 21 chr4 64918044 64918236 -90711884 + B3 SINE B2 1 216 0 6 1080 1129 119 28 17 chr4 64919039 64919218 -90710902 - B2_Mm2 SINE B2 -14 181 1 6 1080 315 0 0 0 chr4 64919271 64919306 -90710814 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 6 1080 270 56 0 0 chr4 64919366 64919402 -90710718 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1080 240 184 0 0 chr4 64919902 64919951 -90710169 + CT-rich Low_complexity Low_complexity 2 50 0 6 1080 378 0 0 0 chr4 64920024 64920066 -90710054 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 6 1080 538 236 0 0 chr4 64920113 64920223 -90709897 - RSINE1 SINE B4 -52 113 4 6 1080 317 107 0 51 chr4 64922456 64922480 -90707640 - HAL1-3A_ME LINE L1 -827 2031 2010 6 1080 531 0 0 0 chr4 64922480 64922539 -90707581 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1080 317 107 0 51 chr4 64922539 64922573 -90707547 - HAL1-3A_ME LINE L1 -849 2009 1976 6 1080 381 93 0 0 chr4 64922574 64922628 -90707492 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 6 1080 235 292 109 62 chr4 64922628 64922756 -90707364 - L1M3 LINE L1 -266 5923 5790 6 1080 392 49 0 47 chr4 64923402 64923466 -90706654 + (TTTTG)n Simple_repeat Simple_repeat 5 65 0 6 1080 236 286 22 11 chr4 64925559 64925651 -90704469 + CT-rich Low_complexity Low_complexity 1 93 0 6 1080 432 0 0 0 chr4 64925770 64925818 -90704302 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1080 651 26 0 0 chr4 64927418 64927495 -90702625 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 6 1080 369 207 26 8 chr4 64927495 64927612 -90702508 + CT-rich Low_complexity Low_complexity 4 122 0 6 1080 7261 72 2 1 chr4 64928944 64929869 -90700251 - L1_Mus3 LINE L1 -1 6637 5712 6 1080 981 130 53 0 chr4 64929869 64930038 -90700082 + B2_Mm1t SINE B2 9 186 -7 6 1080 294 143 0 0 chr4 64930349 64930412 -90699708 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1080 383 309 223 0 chr4 64931670 64931845 -90698275 - B3 SINE B2 -1 215 2 6 1080 269 188 27 68 chr4 64932311 64932385 -90697735 + MIR SINE MIR 81 151 -57 6 1080 323 198 35 0 chr4 64933005 64933072 -90697048 + CT-rich Low_complexity Low_complexity 50 120 0 6 1080 1112 86 6 0 chr4 64933072 64933234 -90696886 + (TCTCC)n Simple_repeat Simple_repeat 2 164 0 6 1080 323 198 35 0 chr4 64933234 64933282 -90696838 + polypyrimidine Low_complexity Low_complexity 2 49 0 6 1080 200 204 73 18 chr4 64934470 64934525 -90695595 + MIRc SINE MIR 91 148 -120 6 1080 3869 98 31 0 chr4 64934875 64935414 -90694706 - L1_Mus2 LINE L1 -1 6565 6010 6 1080 249 33 0 0 chr4 64936047 64936077 -90694043 + (ATG)n Simple_repeat Simple_repeat 2 31 0 6 1080 430 338 40 35 chr4 64939726 64939953 -90690167 + LFSINE_Vert SINE SINE 4 231 -228 6 1080 360 0 0 0 chr4 64941326 64941366 -90688754 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1080 306 0 0 0 chr4 64941366 64941399 -90688721 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1080 1054 44 0 0 chr4 64941752 64941887 -90688233 + B1_Mus1 SINE Alu 13 147 -1 6 1080 211 139 23 0 chr4 64941892 64941935 -90688185 + A-rich Low_complexity Low_complexity 4 47 0 6 1080 1499 46 0 0 chr4 64943456 64943630 -90686490 + L1Md_F2 LINE L1 5413 5586 -297 6 1080 7932 62 1 5 chr4 64943630 64944618 -90685502 + L1Md_F2 LINE L1 5587 6570 -12 6 1080 25 65 0 0 chr4 64944661 64944707 -90685413 + AT_rich Low_complexity Low_complexity 1 46 0 6 1080 324 230 121 26 chr4 64945700 64945816 -90684304 + MIRc SINE MIR 52 178 -90 6 1080 269 365 8 42 chr4 64945869 64945989 -90684131 - PB1D10 SINE Alu -1 116 1 6 1080 552 68 0 0 chr4 64946629 64946702 -90683418 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1080 249 258 61 51 chr4 64946819 64946992 -90683128 + MIR SINE MIR 26 215 -53 6 1080 272 254 173 52 chr4 64948001 64948192 -90681928 - L1MB1 LINE L1 -75 6093 5880 6 1080 1996 295 79 43 chr4 64948205 64948794 -90681326 - Lx8 LINE L1 -1 7472 6857 6 1080 306 0 0 0 chr4 64948794 64948828 -90681292 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1080 1996 295 79 43 chr4 64948828 64949084 -90681036 - Lx8 LINE L1 -617 6856 6598 6 1080 729 251 47 0 chr4 64949083 64949274 -90680846 - L1MB1 LINE L1 -302 5887 5688 6 1080 198 0 0 0 chr4 64951234 64951256 -90678864 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1080 308 325 116 75 chr4 64951402 64951935 -90678185 - Lx8 LINE L1 0 7473 6919 6 1080 1023 66 81 0 chr4 64952367 64952503 -90677617 - B1_Mus1 SINE Alu 0 148 2 6 1080 505 105 11 11 chr4 64953727 64953814 -90676306 + (GGGAGA)n Simple_repeat Simple_repeat 5 91 0 6 1080 1075 267 49 155 chr4 64956114 64956682 -90673438 - RLTR18B LTR ERVK 0 512 5 6 1080 353 348 30 18 chr4 64959087 64959285 -90670835 + MIRb SINE MIR 24 227 -41 6 1080 486 0 0 0 chr4 64961310 64961364 -90668756 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1080 479 96 12 0 chr4 64961365 64961448 -90668672 + (TCCA)n Simple_repeat Simple_repeat 4 87 0 6 1080 402 21 0 0 chr4 64961955 64962002 -90668118 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1080 387 0 0 0 chr4 64962002 64962044 -90668076 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1080 956 198 33 5 chr4 64962736 64962949 -90667171 + URR1B DNA MER1_type 7 225 0 6 1080 656 237 0 0 chr4 64964460 64964595 -90665525 + B1_Mur2 SINE Alu 2 136 -13 6 1080 1447 95 9 5 chr4 64964843 64965064 -90665056 - Lx LINE L1 -8 6646 6425 6 1080 189 398 65 0 chr4 64965253 64965361 -90664759 + MIR SINE MIR 83 197 -65 6 1080 225 337 13 2 chr4 64965896 64966004 -90664116 - MIRb SINE MIR 0 262 154 6 1080 342 0 0 0 chr4 64966823 64966861 -90663259 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 6 1080 188 324 66 7 chr4 64969215 64969352 -90660768 - MIRb SINE MIR -74 194 50 6 1080 1235 48 0 0 chr4 64969945 64970090 -90660030 + B1_Mus1 SINE Alu 1 145 -3 6 1080 243 0 0 0 chr4 64970090 64970117 -90660003 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1080 233 318 12 0 chr4 64971715 64971800 -90658320 - L2a LINE L2 -1 3425 3340 6 1080 785 298 0 0 chr4 64971981 64972199 -90657921 - L1MA6 LINE L1 -30 6270 6053 6 1080 457 181 19 39 chr4 64972383 64972538 -90657582 + Lx9 LINE L1 7491 7642 -2 6 1080 701 260 26 0 chr4 64972585 64972777 -90657343 + B3 SINE B2 20 216 0 6 1080 30 0 0 0 chr4 64975071 64975101 -90655019 + AT_rich Low_complexity Low_complexity 1 30 0 6 1080 495 0 0 0 chr4 64975289 64975344 -90654776 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 6 1080 1628 220 106 48 chr4 64976427 64977030 -90653090 - Lx9 LINE L1 0 7644 7007 6 1080 270 0 0 0 chr4 64977951 64977981 -90652139 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1080 322 291 33 45 chr4 64979727 64979868 -90650252 + MIRb SINE MIR 40 172 -96 6 1080 480 262 0 83 chr4 64980279 64980412 -90649708 + ID_B1 SINE B4 93 214 -10 7 1080 340 291 8 33 chr4 64980429 64980550 -90649570 - PB1D7 SINE Alu -1 119 2 7 1080 450 0 0 0 chr4 64983504 64983554 -90646566 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1080 207 0 0 0 chr4 64983720 64983743 -90646377 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1080 513 0 0 0 chr4 64987154 64987211 -90642909 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1080 222 45 68 0 chr4 64987606 64987650 -90642470 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1080 324 0 0 0 chr4 64990412 64990448 -90639672 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1080 305 254 77 26 chr4 64990700 64990817 -90639303 - MER63A DNA AcHobo -52 158 36 7 1080 259 252 37 9 chr4 64991398 64991506 -90638614 - L1ME2z LINE L1 -444 6000 5890 7 1080 387 0 0 0 chr4 64991778 64991821 -90638299 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1080 288 0 0 0 chr4 64992081 64992113 -90638007 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1080 238 270 22 11 chr4 64992933 64993023 -90637097 + (ATGGTG)n Simple_repeat Simple_repeat 1 91 0 7 1080 250 258 133 10 chr4 64993057 64993155 -90636965 - ORR1E LTR MaLR 0 384 275 7 1080 269 311 42 49 chr4 64993233 64993375 -90636745 - ORR1E LTR MaLR -144 215 75 7 1080 317 276 59 39 chr4 64994433 64994535 -90635585 + PB1D10 SINE Alu 8 111 -6 7 1080 231 176 18 73 chr4 64994486 64994541 -90635579 + ID_B1 SINE B4 173 224 0 7 1080 439 239 57 21 chr4 64994931 64995072 -90635048 + MamRep605 Unknown Unknown 474 619 -257 7 1080 22 0 0 0 chr4 64995525 64995547 -90634573 + AT_rich Low_complexity Low_complexity 1 22 0 7 1080 285 169 0 0 chr4 64995583 64995642 -90634478 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1080 826 69 8 8 chr4 64996117 64996249 -90633871 - L1Md_F2 LINE L1 -1 6581 6450 7 1080 476 81 14 0 chr4 64996276 64996350 -90633770 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1080 441 0 0 0 chr4 64996350 64996398 -90633722 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1080 593 339 50 11 chr4 64997085 64997362 -90632758 + B4A SINE B4 1 288 -4 7 1080 184 222 63 89 chr4 64998003 64998082 -90632038 - MIR3 SINE MIR -18 190 114 7 1080 427 178 10 10 chr4 64999433 64999535 -90630585 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 7 1080 211 333 43 35 chr4 65000097 65000212 -90629908 - L2c LINE L2 -39 3348 3233 1 1080 247 300 89 39 chr4 65000295 65000504 -90629616 + MIR SINE MIR 22 234 -28 2 1080 877 104 22 28 chr4 65000685 65000754 -90629366 + polypurine Low_complexity Low_complexity 3 69 0 3 1080 1047 96 0 33 chr4 65000754 65000937 -90629183 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 1080 877 104 22 28 chr4 65000937 65001045 -90629075 + polypurine Low_complexity Low_complexity 70 178 0 5 1080 853 101 23 34 chr4 65001053 65001228 -90628892 + GA-rich Low_complexity Low_complexity 3 175 0 6 1080 1206 17 0 53 chr4 65001237 65001424 -90628696 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 7 1080 387 0 0 0 chr4 65002440 65002483 -90627637 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1080 274 271 70 12 chr4 65003489 65003575 -90626545 - Lx8 LINE L1 -166 7307 7217 9 1080 3119 81 7 5 chr4 65003609 65004029 -90626091 - BGLII LTR ERVK 0 421 1 1 1080 22 80 0 0 chr4 65004520 65004570 -90625550 + AT_rich Low_complexity Low_complexity 1 50 0 1 1080 324 0 0 0 chr4 65004673 65004709 -90625411 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1080 378 0 0 0 chr4 65004709 65004750 -90625370 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1080 213 39 0 0 chr4 65005447 65005473 -90624647 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1080 473 354 17 0 chr4 65005646 65005827 -90624293 - MIRb SINE MIR -76 192 9 1 1080 244 299 9 36 chr4 65007720 65007831 -90622289 + (CACCAT)n Simple_repeat Simple_repeat 3 110 0 1 1080 335 344 79 44 chr4 65007831 65008059 -90622061 - MIRc SINE MIR -10 258 20 1 1080 423 0 0 0 chr4 65008387 65008434 -90621686 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1080 388 286 21 28 chr4 65008987 65009131 -90620989 + MIR SINE MIR 95 237 -25 1 1080 231 327 0 0 chr4 65009613 65009665 -90620455 + ID4 SINE ID 13 64 -19 2 1080 474 18 0 0 chr4 65009668 65009723 -90620397 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1080 212 31 0 59 chr4 65010932 65010966 -90619154 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2 1080 25 0 0 0 chr4 65011222 65011247 -90618873 + AT_rich Low_complexity Low_complexity 1 25 0 2 1081 244 226 0 0 chr4 65016088 65016141 -90613979 + A-rich Low_complexity Low_complexity 2 54 0 2 1081 372 111 0 0 chr4 65016158 65016221 -90613899 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1081 320 229 116 47 chr4 65016917 65017057 -90613063 + MIR SINE MIR 39 202 -66 2 1081 630 0 0 0 chr4 65017128 65017198 -90612922 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 1081 266 213 11 0 chr4 65017668 65017762 -90612358 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1081 268 148 0 32 chr4 65018025 65018088 -90612032 + GA-rich Low_complexity Low_complexity 2 62 0 2 1081 219 240 0 0 chr4 65018589 65018639 -90611481 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1081 21 36 0 0 chr4 65018773 65018801 -90611319 + AT_rich Low_complexity Low_complexity 1 28 0 3 1081 515 309 31 18 chr4 65018933 65019157 -90610963 + Lx8 LINE L1 7046 7272 -201 3 1081 230 383 50 0 chr4 65019459 65019579 -90610541 + MIR SINE MIR 52 177 -85 3 1081 3288 30 12 10 chr4 65019711 65020111 -90610009 - L1Md_F3 LINE L1 -14 6570 6170 3 1081 237 278 202 20 chr4 65020426 65020525 -90609595 - PB1D9 SINE Alu -1 119 3 3 1081 26 0 0 0 chr4 65020599 65020625 -90609495 + AT_rich Low_complexity Low_complexity 1 26 0 3 1081 721 179 81 0 chr4 65021305 65021478 -90608642 + Lx4B LINE L1 6866 7052 -6 3 1081 271 301 27 0 chr4 65021665 65021738 -90608382 + ID SINE ID 11 85 -139 3 1081 5466 141 76 4 chr4 65023214 65024188 -90605932 - Lx LINE L1 -6 6648 5605 3 1081 185 250 19 0 chr4 65024710 65024762 -90605358 - L2 LINE L2 -344 3075 3023 4 1081 221 198 8 51 chr4 65025207 65025324 -90604796 + CT-rich Low_complexity Low_complexity 1 112 0 4 1081 466 290 38 31 chr4 65025958 65026118 -90604002 - MIR SINE MIR -69 193 33 4 1081 323 301 9 115 chr4 65026157 65026375 -90603745 + Charlie5 DNA MER1_type 2375 2569 -55 4 1081 402 57 0 0 chr4 65026567 65026620 -90603500 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1081 187 194 0 0 chr4 65026825 65026856 -90603264 + MIRm SINE MIR 234 264 -12 4 1081 189 385 115 0 chr4 65027731 65027905 -90602215 + MIR SINE MIR 34 227 -35 4 1081 255 61 0 0 chr4 65027909 65027942 -90602178 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 4 1081 250 297 13 13 chr4 65028731 65028806 -90601314 - L2b LINE L2 -4 3371 3297 4 1081 728 309 56 9 chr4 65029166 65029597 -90600523 + ERVL-B4-int LTR ERVL 5260 5710 -4 4 1081 200 152 0 42 chr4 65029678 65029726 -90600394 + T-rich Low_complexity Low_complexity 4 49 0 5 1081 6965 70 1 5 chr4 65029754 65030703 -90599417 - L1Md_F2 LINE L1 -8 6574 5630 5 1081 1408 223 84 20 chr4 65030703 65031060 -90599060 + MT2A LTR ERVL 81 460 -73 5 1081 609 322 18 28 chr4 65031198 65031482 -90598638 + Lx8 LINE L1 6979 7259 -214 5 1081 201 132 0 0 chr4 65031549 65031587 -90598533 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 5 1081 29 0 0 0 chr4 65031678 65031707 -90598413 + AT_rich Low_complexity Low_complexity 1 29 0 5 1081 492 18 0 0 chr4 65031890 65031947 -90598173 + (AGGGGG)n Simple_repeat Simple_repeat 6 62 0 5 1081 187 250 100 0 chr4 65032560 65032620 -90597500 - MIR3 SINE MIR -40 168 103 5 1081 181 0 69 0 chr4 65032887 65032916 -90597204 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1081 233 345 48 79 chr4 65033085 65033211 -90596909 - MER5A DNA MER1_type -25 164 43 5 1081 180 404 21 7 chr4 65033868 65034010 -90596110 + MIRb SINE MIR 114 257 -11 6 1081 261 0 0 0 chr4 65034719 65034748 -90595372 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1081 861 95 0 0 chr4 65034748 65034894 -90595226 + (GA)n Simple_repeat Simple_repeat 2 148 0 6 1081 348 24 0 0 chr4 65034894 65034935 -90595185 + HAL1-3A_ME LINE L1 1983 2023 -835 6 1081 304 361 41 6 chr4 65035692 65035862 -90594258 - MIR SINE MIR -1 261 86 6 1081 242 286 33 67 chr4 65036103 65036223 -90593897 - MIR SINE MIR -56 152 37 6 1081 273 169 0 0 chr4 65036406 65036465 -90593655 + (ATG)n Simple_repeat Simple_repeat 3 61 0 6 1081 469 320 0 33 chr4 65036473 65036657 -90593463 + GA-rich Low_complexity Low_complexity 3 180 0 6 1081 534 158 353 12 chr4 65036767 65036934 -90593186 + URR1B DNA MER1_type 1 224 -1 6 1081 243 0 0 0 chr4 65038264 65038291 -90591829 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1081 442 340 13 20 chr4 65038350 65038503 -90591617 - B4 SINE B4 -136 156 5 7 1081 396 0 0 0 chr4 65038808 65038852 -90591268 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1081 446 208 19 47 chr4 65039175 65039281 -90590839 - B4A SINE B4 -5 287 185 7 1081 337 259 88 96 chr4 65039486 65039526 -90590594 - MT2B LTR ERVL -261 340 259 7 1081 618 222 0 8 chr4 65039526 65039653 -90590467 - B1_Mur2 SINE Alu -12 137 12 7 1081 337 259 88 96 chr4 65039653 65039725 -90590395 - MT2B LTR ERVL -261 258 104 7 1081 237 65 0 0 chr4 65040100 65040131 -90589989 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 7 1081 919 62 0 23 chr4 65040771 65040902 -90589218 - L1_Mus4 LINE L1 -166 6472 6345 7 1081 509 62 0 0 chr4 65040904 65040985 -90589135 + L1_Mus4 LINE L1 6553 6633 -3 7 1081 574 324 33 19 chr4 65041154 65041365 -90588755 + Lx8 LINE L1 7049 7262 -211 7 1081 720 123 0 0 chr4 65041929 65042043 -90588077 + (GA)n Simple_repeat Simple_repeat 1 114 0 7 1081 304 281 150 39 chr4 65043108 65043334 -90586786 - MIRc SINE MIR -15 253 4 7 1081 864 244 45 0 chr4 65044443 65044644 -90585476 - B3 SINE B2 -6 210 1 8 1081 311 335 71 60 chr4 65044691 65044987 -90585133 - B4A SINE B4 -6 286 11 8 1081 429 278 153 11 chr4 65045678 65045867 -90584253 + ID_B1 SINE B4 2 217 -7 8 1081 261 179 0 0 chr4 65046002 65046058 -90584062 - Lx8 LINE L1 -2 7471 7416 8 1081 372 283 19 70 chr4 65046089 65046245 -90583875 + RMER30 DNA MER1_type 17 164 -38 8 1081 213 286 0 0 chr4 65046613 65046669 -90583451 + (CCA)n Simple_repeat Simple_repeat 1 56 0 8 1081 226 339 45 11 chr4 65047528 65047685 -90582435 + MIRb SINE MIR 93 251 -11 8 1081 685 100 45 23 chr4 65048695 65048828 -90581292 + L1_Mus3 LINE L1 6503 6638 0 8 1081 198 156 15 30 chr4 65049017 65049083 -90581037 + (TATG)n Simple_repeat Simple_repeat 2 66 0 8 1081 207 0 0 0 chr4 65049214 65049237 -90580883 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1081 416 308 104 55 chr4 65049257 65049439 -90580681 - B4A SINE B4 -59 233 43 9 1081 202 379 53 0 chr4 65049764 65049859 -90580261 + MIRc SINE MIR 2 101 -167 9 1081 1074 277 82 30 chr4 65050932 65051260 -90578860 - ORR1E LTR MaLR -11 348 4 9 1081 294 329 0 0 chr4 65051273 65051358 -90578762 - PB1D10 SINE Alu -29 88 4 9 1081 350 275 134 51 chr4 65052568 65052725 -90577395 - MIR3 SINE MIR -25 183 14 9 1081 352 269 66 19 chr4 65053152 65053258 -90576862 + MER5A1 DNA MER1_type 19 129 -37 9 1081 22 0 0 0 chr4 65053980 65054002 -90576118 + GC_rich Low_complexity Low_complexity 1 22 0 9 1081 219 125 0 0 chr4 65054002 65054042 -90576078 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 9 1081 551 78 11 0 chr4 65054045 65054135 -90575985 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 9 1081 189 94 0 0 chr4 65055523 65055555 -90574565 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1081 246 95 0 0 chr4 65055830 65055872 -90574248 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1081 308 280 23 53 chr4 65056450 65056582 -90573538 + MIRb SINE MIR 121 248 -20 1 1081 309 222 13 40 chr4 65057026 65057038 -90573082 + ID_B1 SINE B4 148 219 -4 1 1081 483 32 16 0 chr4 65057038 65057100 -90573020 + B1_Mus2 SINE Alu 80 142 -5 1 1081 459 0 0 0 chr4 65057857 65057908 -90572212 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1081 28 48 0 0 chr4 65058217 65058259 -90571861 + AT_rich Low_complexity Low_complexity 1 42 0 1 1081 210 118 0 0 chr4 65058513 65058547 -90571573 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1 1081 6817 52 18 4 chr4 65058826 65059687 -90570433 - L1Md_F2 LINE L1 0 6582 5714 1 1081 236 347 116 30 chr4 65060531 65060673 -90569447 - MIR3 SINE MIR -31 177 31 1 1081 187 306 82 82 chr4 65060808 65060943 -90569177 - MIRm SINE MIR -120 156 22 1 1081 215 330 39 23 chr4 65061075 65061199 -90568921 + MIR SINE MIR 1 124 -144 1 1081 386 333 34 14 chr4 65061323 65061469 -90568651 + B1F2 SINE Alu 1 149 0 1 1081 184 416 32 0 chr4 65061735 65061860 -90568260 + MIRb SINE MIR 92 220 -48 1 1081 248 317 55 7 chr4 65062143 65062232 -90567888 - ID4_ SINE ID -61 91 2 1 1081 253 308 62 70 chr4 65062866 65062995 -90567125 - MIRc SINE MIR -117 151 24 1 1081 240 232 230 10 chr4 65065204 65065304 -90564816 + MIR SINE MIR 1 122 -140 1 1081 478 370 59 19 chr4 65065444 65065897 -90564223 + MLT1G LTR MaLR 71 595 0 1 1081 232 348 55 75 chr4 65065926 65066072 -90564048 + MER58A DNA MER1_type 28 170 -54 1 1081 378 0 0 0 chr4 65066774 65066816 -90563304 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1081 294 325 136 34 chr4 65066857 65066975 -90563145 - B3A SINE B2 -85 131 2 1 1081 369 0 0 0 chr4 65067000 65067041 -90563079 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1081 183 100 0 0 chr4 65067462 65067492 -90562628 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1081 450 53 0 0 chr4 65067552 65067609 -90562511 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 1 1081 192 271 131 30 chr4 65068046 65068145 -90561975 + MIR3 SINE MIR 15 123 -85 1 1081 312 333 70 0 chr4 65068689 65068803 -90561317 + MIRb SINE MIR 114 235 -33 1 1081 3323 184 83 17 chr4 65068889 65069543 -90560577 + Lx5 LINE L1 6354 7050 0 1 1081 447 106 0 0 chr4 65069807 65069873 -90560247 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 1 1081 281 295 9 28 chr4 65070135 65070243 -90559877 + L1MB7 LINE L1 4791 4896 -1250 1 1081 210 138 34 17 chr4 65070255 65070314 -90559806 + CT-rich Low_complexity Low_complexity 3 62 0 1 1081 859 292 15 38 chr4 65070577 65070818 -90559302 + ID_B1 SINE B4 6 240 -52 1 1081 183 171 0 0 chr4 65070832 65070867 -90559253 + L3b LINE CR1 447 481 -1 1 1081 342 348 8 42 chr4 65071069 65071189 -90558931 - B4A SINE B4 -4 288 173 1 1081 731 123 8 0 chr4 65071254 65071376 -90558744 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1081 694 287 101 25 chr4 65071419 65071826 -90558294 + L1MB7 LINE L1 5727 6164 -20 1 1081 1283 175 9 0 chr4 65072191 65072408 -90557712 + URR1B DNA MER1_type 7 225 0 1 1081 629 283 23 41 chr4 65072408 65072456 -90557664 - CYRA11_Mm Unknown Y-chromosome -445 172 129 1 1081 367 262 23 161 chr4 65073063 65073281 -90556839 + Lx8 LINE L1 7275 7462 -11 1 1081 937 209 65 42 chr4 65073560 65073850 -90556270 - MTC LTR MaLR -83 338 12 1 1081 210 321 0 47 chr4 65074185 65074270 -90555850 + L2c LINE L2 3274 3354 -33 1 1081 342 0 0 0 chr4 65074697 65074735 -90555385 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1081 617 193 73 32 chr4 65074885 65075008 -90555112 + B1_Mur3 SINE Alu 3 130 -19 1 1081 253 234 13 0 chr4 65075013 65075090 -90555030 + A-rich Low_complexity Low_complexity 4 81 0 1 1081 438 20 0 0 chr4 65075354 65075405 -90554715 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1081 204 286 152 11 chr4 65075966 65076058 -90554062 - MIR3 SINE MIR -49 159 55 1 1081 243 333 71 60 chr4 65077401 65077583 -90552537 - MIRc SINE MIR -82 186 3 1 1081 1533 63 21 5 chr4 65078295 65078486 -90551634 - B2_Mm2 SINE B2 0 195 2 1 1081 194 370 74 0 chr4 65078822 65078903 -90551217 + L2b LINE L2 3257 3343 -32 1 1081 279 0 0 0 chr4 65079025 65079056 -90551064 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1081 228 67 0 0 chr4 65079442 65079472 -90550648 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1081 192 152 0 0 chr4 65079713 65079746 -90550374 + GA-rich Low_complexity Low_complexity 1 33 0 1 1081 5710 61 4 0 chr4 65079824 65080499 -90549621 - L1Md_F2 LINE L1 -2 6580 5903 1 1081 311 304 115 0 chr4 65080505 65080646 -90549474 + MIR SINE MIR 12 176 -92 1 1081 318 297 47 74 chr4 65080837 65080986 -90549134 + ID_B1 SINE B4 80 224 0 1 1081 284 266 15 15 chr4 65081003 65081068 -90549052 + ID4_ SINE ID 14 78 -5 1 1081 413 70 18 0 chr4 65081087 65081144 -90548976 + HAL1-3A_ME LINE L1 1973 2030 -828 1 1081 254 82 0 39 chr4 65081144 65081195 -90548925 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 1 1081 28 0 0 0 chr4 65082196 65082224 -90547896 + AT_rich Low_complexity Low_complexity 1 28 0 1 1081 194 244 43 22 chr4 65082328 65082374 -90547746 - MIRc SINE MIR -189 79 33 1 1081 389 309 66 7 chr4 65083787 65083924 -90546196 + B1_Mur3 SINE Alu 5 149 0 1 1081 3656 25 2 0 chr4 65085319 65085714 -90544406 + MTA_Mm LTR MaLR 1 396 0 1 1081 9521 40 6 1 chr4 65085714 65086807 -90543313 + MTA_Mm-int LTR MaLR 1 1098 0 1 1081 3656 25 2 0 chr4 65086807 65087202 -90542918 + MTA_Mm LTR MaLR 1 396 0 1 1081 185 196 0 21 chr4 65088446 65088493 -90541627 + GA-rich Low_complexity Low_complexity 4 49 0 1 1081 210 37 0 0 chr4 65089236 65089263 -90540857 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1081 1149 68 0 0 chr4 65089263 65089396 -90540724 - B1_Mm SINE Alu -12 135 3 1 1081 928 128 0 11 chr4 65090090 65090271 -90539849 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1081 191 293 286 0 chr4 65090785 65090925 -90539195 - MIR SINE MIR -38 224 45 1 1081 285 75 0 0 chr4 65090960 65091000 -90539120 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1081 433 296 65 65 chr4 65091350 65091567 -90538553 + MIRb SINE MIR 18 234 -34 1 1081 673 43 11 11 chr4 65093306 65093400 -90536720 + (GGA)n Simple_repeat Simple_repeat 3 96 0 1 1081 412 291 21 56 chr4 65093562 65093704 -90536416 - MIRb SINE MIR -121 147 11 1 1081 222 320 10 20 chr4 65095260 65095362 -90534758 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 1 1081 274 74 18 18 chr4 65095552 65095607 -90534513 + (CAAAAA)n Simple_repeat Simple_repeat 4 58 0 1 1081 231 308 11 13 chr4 65095877 65095969 -90534151 + MIR SINE MIR 63 156 -112 1 1081 261 57 0 0 chr4 65096339 65096374 -90533746 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1081 232 360 0 9 chr4 65096489 65096604 -90533516 - PB1D10 SINE Alu -2 115 2 1 1081 251 299 34 11 chr4 65096955 65097043 -90533077 + MER117 DNA MER1_type 108 197 0 1 1081 3603 296 75 12 chr4 65097861 65099080 -90531040 + Lx8 LINE L1 6177 7472 -1 1 1081 2145 222 86 13 chr4 65099088 65099621 -90530499 + Lx9 LINE L1 6674 7245 -399 1 1081 458 228 127 64 chr4 65101704 65101877 -90528243 - B3A SINE B2 -14 184 1 1 1081 628 47 0 0 chr4 65102006 65102091 -90528029 - L1Md_F3 LINE L1 -1 6583 6499 1 1081 279 0 0 0 chr4 65102093 65102124 -90527996 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1081 26 0 0 0 chr4 65102197 65102223 -90527897 + AT_rich Low_complexity Low_complexity 1 26 0 1 1081 1623 131 41 4 chr4 65102223 65102469 -90527651 - Lx2A LINE L1 -9 6999 6745 1 1081 1187 119 68 0 chr4 65102470 65102647 -90527473 + Lx2A LINE L1 6549 6737 -271 1 1081 228 325 64 40 chr4 65103627 65103752 -90526368 + MIRb SINE MIR 27 154 -114 1 1081 631 284 97 16 chr4 65104792 65104978 -90525142 + B3 SINE B2 15 215 -1 1 1081 383 316 39 13 chr4 65104959 65105113 -90525007 + MLT1K LTR MaLR 427 584 -11 1 1081 215 332 48 52 chr4 65105353 65105528 -90524592 + L2a LINE L2 2942 3108 -318 1 1081 205 311 0 47 chr4 65105673 65105737 -90524383 + L2a LINE L2 3366 3426 0 1 1081 779 210 96 37 chr4 65105819 65105914 -90524206 + RMER17C LTR ERVK 123 225 -185 1 1081 558 0 0 0 chr4 65105914 65105976 -90524144 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1081 779 210 96 37 chr4 65105976 65106152 -90523968 + RMER17C LTR ERVK 226 410 0 1 1081 450 175 28 93 chr4 65106152 65106259 -90523861 + RMER17C-int LTR ERVK 1 100 -3138 1 1081 1371 231 65 3 chr4 65106433 65106755 -90523365 + Lx9 LINE L1 6957 7298 -346 1 1081 1101 192 23 14 chr4 65107159 65107375 -90522745 + Lx9 LINE L1 7248 7465 -179 1 1081 300 299 0 38 chr4 65108280 65108360 -90521760 - LTR16E1 LTR ERVL -45 493 417 1 1081 227 311 34 84 chr4 65109514 65109693 -90520427 - MIRc SINE MIR -82 186 17 1 1081 393 22 0 0 chr4 65109875 65109921 -90520199 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1081 450 0 0 0 chr4 65110837 65110887 -90519233 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1081 200 111 0 77 chr4 65111064 65111103 -90519017 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1081 284 326 0 22 chr4 65111175 65111310 -90518810 + GA-rich Low_complexity Low_complexity 2 133 0 1 1081 393 123 0 0 chr4 65111728 65111793 -90518327 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1081 344 194 16 16 chr4 65111796 65111922 -90518198 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 1081 3440 54 0 0 chr4 65112311 65112756 -90517364 + L1Md_F2 LINE L1 5142 5586 -297 1 1081 8161 46 1 2 chr4 65112756 65113752 -90516368 + L1Md_F2 LINE L1 5587 6581 -1 1 1081 200 334 93 4 chr4 65114373 65114510 -90515610 - MIRb SINE MIR -56 206 61 1 1081 267 245 0 0 chr4 65115149 65115202 -90514918 + RSINE1 SINE B4 68 120 -45 1 1081 405 272 121 53 chr4 65115313 65115503 -90514617 + L2a LINE L2 2938 3140 -286 2 1081 181 368 77 26 chr4 65115603 65115720 -90514400 + L2a LINE L2 3298 3420 -6 2 1081 210 326 79 34 chr4 65117221 65117310 -90512810 + MIRb SINE MIR 97 189 -79 2 1081 543 81 0 0 chr4 65117522 65117608 -90512512 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1081 210 71 0 0 chr4 65117608 65117636 -90512484 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1081 187 229 66 79 chr4 65117686 65117762 -90512358 - MIRc SINE MIR -12 256 182 2 1081 265 337 0 11 chr4 65118159 65118246 -90511874 - MER5A DNA MER1_type -103 86 1 2 1081 261 355 105 25 chr4 65119716 65119878 -90510242 + MIRb SINE MIR 9 183 -85 2 1081 373 192 272 39 chr4 65120249 65120352 -90509768 + B3 SINE B2 2 128 -88 2 1081 198 0 0 0 chr4 65120646 65120668 -90509452 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1081 767 276 91 32 chr4 65120692 65121232 -90508888 + L1MA8 LINE L1 4791 5378 -913 2 1081 607 286 81 0 chr4 65121232 65121417 -90508703 + B3 SINE B2 1 200 -16 2 1081 320 0 25 0 chr4 65121417 65121457 -90508663 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 2 1081 278 248 105 99 chr4 65121457 65121664 -90508456 + L1MA8 LINE L1 5379 5572 -728 2 1081 462 227 176 41 chr4 65121716 65122052 -90508068 + L1MA8 LINE L1 5714 6130 -161 2 1081 930 291 123 0 chr4 65122482 65122726 -90507394 + B4 SINE B4 4 277 -15 2 1081 366 42 0 0 chr4 65122736 65122784 -90507336 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1081 483 18 0 0 chr4 65122833 65122889 -90507231 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1081 230 296 91 10 chr4 65123341 65123440 -90506680 - MamRep564 Unknown Unknown -150 207 101 2 1081 409 279 0 9 chr4 65123715 65123827 -90506293 + PB1D10 SINE Alu 1 111 -6 2 1081 180 217 0 0 chr4 65124449 65124495 -90505625 + CT-rich Low_complexity Low_complexity 1 46 0 2 1081 23 0 0 0 chr4 65124758 65124781 -90505339 + AT_rich Low_complexity Low_complexity 1 23 0 2 1081 631 294 111 31 chr4 65124781 65125440 -90504680 + L1M4c LINE L1 1450 2168 -3915 2 1081 229 118 39 0 chr4 65125632 65125683 -90504437 + GA-rich Low_complexity Low_complexity 2 54 0 2 1081 553 208 18 12 chr4 65125933 65126103 -90504017 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 2 1081 261 57 0 0 chr4 65126118 65126153 -90503967 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2 1081 314 283 2 0 chr4 65126258 65126376 -90503744 + L1M4c LINE L1 5595 5716 -676 2 1081 891 305 9 0 chr4 65126381 65126594 -90503526 + B3 SINE B2 2 216 0 2 1081 674 311 64 28 chr4 65126604 65127113 -90503007 + L1MA6 LINE L1 5491 6027 -264 2 1081 507 293 62 33 chr4 65127239 65127557 -90502563 + L1MA4 LINE L1 5698 6020 -277 2 1081 880 309 38 6 chr4 65128084 65128397 -90501723 + Lx8 LINE L1 6467 6789 -684 2 1081 405 0 0 0 chr4 65128411 65128456 -90501664 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1081 1118 29 0 0 chr4 65128491 65128630 -90501490 + L1Md_T LINE L1 6443 6581 -1 2 1081 1998 127 39 3 chr4 65128727 65129035 -90501085 + ORR1A2 LTR MaLR 9 327 0 2 1081 1352 237 7 18 chr4 65129035 65129318 -90500802 + MTD LTR MaLR 140 419 0 2 1081 781 306 34 9 chr4 65129320 65129489 -90500631 + Lx7 LINE L1 6779 6946 -750 2 1081 387 0 0 0 chr4 65129489 65129532 -90500588 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1081 781 306 34 9 chr4 65129532 65129685 -90500435 + Lx7 LINE L1 6947 7108 -588 2 1081 387 0 0 0 chr4 65129869 65129912 -90500208 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1081 1686 52 0 0 chr4 65130125 65130337 -90499783 + L1Md_F2 LINE L1 5375 5586 -297 2 1081 8140 43 6 2 chr4 65130338 65131329 -90498791 + L1Md_F2 LINE L1 5588 6582 0 2 1081 3861 190 69 8 chr4 65131660 65132732 -90497388 + L1_Mur2 LINE L1 907 2043 -3834 2 1081 2643 166 40 6 chr4 65132758 65133395 -90496725 + Lx5 LINE L1 5447 6111 -939 2 1081 431 306 94 20 chr4 65133685 65133888 -90496232 - MamRep564 Unknown Unknown -57 300 83 2 1081 192 200 0 0 chr4 65135669 65135704 -90494416 - MIR SINE MIR -112 150 116 2 1081 224 213 0 41 chr4 65135764 65135813 -90494307 - B4 SINE B4 -245 47 1 2 1081 612 0 0 0 chr4 65136006 65136074 -90494046 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1081 234 0 0 0 chr4 65136075 65136101 -90494019 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1081 473 248 90 21 chr4 65136524 65136668 -90493452 - MIRc SINE MIR -6 262 109 2 1081 197 298 125 21 chr4 65137521 65137617 -90492503 + MIR SINE MIR 30 135 -73 2 1081 370 305 23 57 chr4 65137654 65137831 -90492289 - MER5B DNA MER1_type -3 175 5 2 1081 441 0 0 0 chr4 65138834 65138883 -90491237 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1081 578 91 32 32 chr4 65138902 65139027 -90491093 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 2 1081 236 306 9 67 chr4 65139065 65139170 -90490950 - MER5A1 DNA MER1_type -57 109 11 2 1081 360 176 0 0 chr4 65139894 65139962 -90490158 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1081 560 14 14 0 chr4 65139994 65140063 -90490057 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 2 1081 2148 35 12 0 chr4 65140279 65140537 -90489583 - L1Md_F3 LINE L1 -14 6570 6310 2 1081 438 165 19 10 chr4 65141201 65141305 -90488815 + CT-rich Low_complexity Low_complexity 2 106 0 2 1081 21 0 0 0 chr4 65141424 65141445 -90488675 + AT_rich Low_complexity Low_complexity 1 21 0 2 1081 334 245 0 87 chr4 65142087 65142190 -90487930 + L1MA6 LINE L1 6202 6296 -1 2 1081 789 232 38 62 chr4 65142190 65142480 -90487640 + MER113 DNA MER1_type 219 501 -20 2 1082 365 0 22 0 chr4 65143798 65143843 -90486277 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 2 1082 465 272 10 10 chr4 65144171 65144275 -90485845 - PB1D10 SINE Alu -1 116 13 2 1082 242 295 112 15 chr4 65145933 65146067 -90484053 + MIR SINE MIR 116 262 0 2 1082 587 265 77 0 chr4 65146999 65147180 -90482940 + B3A SINE B2 4 198 0 2 1082 512 76 0 0 chr4 65148155 65148221 -90481899 - L1Md_F2 LINE L1 -209 6373 6308 2 1082 823 19 0 0 chr4 65148226 65148334 -90481786 + L1Md_T LINE L1 6475 6582 0 2 1082 208 218 36 0 chr4 65148444 65148499 -90481621 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2 1082 481 221 7 7 chr4 65148507 65148648 -90481472 + (TATG)n Simple_repeat Simple_repeat 4 144 0 2 1082 202 337 95 12 chr4 65150022 65150106 -90480014 + L2a LINE L2 2986 3076 -350 2 1082 182 298 9 138 chr4 65150320 65150429 -90479691 + L2a LINE L2 3292 3386 -1 2 1082 185 338 25 25 chr4 65150555 65150662 -90479458 - MIRc SINE MIR -115 153 47 2 1082 236 348 11 0 chr4 65151619 65151708 -90478412 - Charlie9 DNA MER1_type -2661 96 7 2 1082 396 0 0 0 chr4 65151987 65152031 -90478089 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1082 558 0 0 0 chr4 65152353 65152415 -90477705 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1082 288 120 0 0 chr4 65152415 65152464 -90477656 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1082 185 308 0 0 chr4 65152620 65152672 -90477448 - MIR SINE MIR -61 147 96 2 1082 826 240 36 0 chr4 65152696 65152892 -90477228 - MER63A DNA AcHobo -1 209 7 2 1082 225 329 0 35 chr4 65155248 65155333 -90474787 - ID2 SINE ID 0 83 2 2 1082 222 37 0 0 chr4 65156300 65156327 -90473793 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2 1082 369 0 0 0 chr4 65157160 65157201 -90472919 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1082 240 180 100 0 chr4 65157840 65157890 -90472230 - MER94 DNA AcHobo -10 124 70 2 1082 300 254 91 58 chr4 65158922 65159043 -90471077 - MIRb SINE MIR -125 143 19 2 1082 231 200 22 0 chr4 65159069 65159114 -90471006 + tRNA-Gly-GGA tRNA tRNA 1 46 -29 2 1082 302 305 40 48 chr4 65159167 65159291 -90470829 + B4A SINE B4 72 194 -98 2 1082 514 290 7 28 chr4 65159191 65159333 -90470787 + B1F1 SINE Alu 9 147 -2 2 1082 235 221 14 29 chr4 65159334 65159361 -90470759 + polypurine Low_complexity Low_complexity 2 26 0 2 1082 198 0 0 0 chr4 65159361 65159383 -90470737 + (ATAAG)n Simple_repeat Simple_repeat 2 23 0 2 1082 235 221 14 29 chr4 65159383 65159425 -90470695 + polypurine Low_complexity Low_complexity 27 69 0 2 1082 840 180 0 0 chr4 65159428 65159589 -90470531 + GA-rich Low_complexity Low_complexity 2 162 0 2 1082 403 325 16 0 chr4 65159634 65159757 -90470363 + B1F1 SINE Alu 5 129 -20 2 1082 261 0 0 0 chr4 65159757 65159786 -90470334 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1082 627 276 12 24 chr4 65159902 65160069 -90470051 - MER58A DNA MER1_type -8 216 52 2 1082 270 0 0 0 chr4 65160403 65160433 -90469687 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1082 666 0 0 0 chr4 65160859 65160933 -90469187 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1082 455 370 55 6 chr4 65162052 65162234 -90467886 - MIRb SINE MIR -23 245 55 2 1082 290 356 93 16 chr4 65162797 65162991 -90467129 - MIR SINE MIR 0 262 54 2 1082 960 268 18 29 chr4 65163063 65163336 -90466784 + B4 SINE B4 5 274 -18 2 1082 272 258 16 0 chr4 65163816 65163878 -90466242 + ID4 SINE ID 5 67 -16 2 1082 271 233 29 67 chr4 65163914 65164098 -90466022 + L1_Mur3 LINE L1 5269 5467 -689 2 1082 346 328 23 11 chr4 65164303 65164479 -90465641 + L1M3 LINE L1 5600 5777 -394 2 1082 1186 230 0 4 chr4 65165133 65165391 -90464729 - Lx6 LINE L1 -26 7434 7178 2 1082 238 331 50 56 chr4 65165432 65165592 -90464528 - MIR SINE MIR -69 193 35 2 1082 292 356 7 52 chr4 65166006 65166160 -90463960 - MIR SINE MIR -62 200 54 2 1082 1920 226 5 10 chr4 65166237 65166639 -90463481 + MTC LTR MaLR 14 413 -8 2 1082 3988 191 157 50 chr4 65166647 65167780 -90462340 + MTC-int LTR MaLR 5 1258 0 2 1082 1569 214 125 5 chr4 65167780 65168156 -90461964 + MTC LTR MaLR 1 421 0 2 1082 462 44 0 42 chr4 65170385 65170456 -90459664 + L1Md_F2 LINE L1 6503 6570 -12 2 1082 241 316 147 0 chr4 65171209 65171304 -90458816 - MIRm SINE MIR -5 271 163 2 1082 422 143 13 0 chr4 65172196 65172273 -90457847 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1082 1529 82 0 0 chr4 65173018 65173237 -90456883 - L1_Mus1 LINE L1 -446 6121 5903 3 1082 3095 73 0 0 chr4 65173237 65173636 -90456484 + L1_Mus1 LINE L1 6169 6567 0 3 1082 621 100 0 0 chr4 65173636 65173726 -90456394 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 3 1082 204 40 0 0 chr4 65173895 65173920 -90456200 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 3 1082 187 374 48 8 chr4 65173935 65174059 -90456061 + MIRb SINE MIR 130 258 -10 3 1082 390 42 0 0 chr4 65174827 65174875 -90455245 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 3 1082 766 86 0 0 chr4 65174895 65175000 -90455120 - B1_Mus2 SINE Alu 0 147 43 3 1082 348 198 58 69 chr4 65174939 65175026 -90455094 - RLTR25A LTR ERVK -521 582 497 3 1082 817 194 0 21 chr4 65175744 65175886 -90454234 - B1_Mur3 SINE Alu -10 139 1 3 1082 364 275 105 56 chr4 65176417 65176579 -90453541 + L1ME3A LINE L1 5841 6010 -163 3 1082 316 271 17 8 chr4 65176599 65176718 -90453402 + L1ME3A LINE L1 6054 6173 0 3 1082 193 382 138 12 chr4 65176789 65176956 -90453164 - MIR3 SINE MIR -6 202 15 3 1082 259 333 0 0 chr4 65177989 65178067 -90452053 + T-rich Low_complexity Low_complexity 6 83 0 3 1082 241 365 97 97 chr4 65178169 65178345 -90451775 + LTR16E1 LTR ERVL 47 222 -316 3 1082 276 266 42 21 chr4 65179005 65179101 -90451019 + RMER10B LTR ERVL 245 342 -56 3 1082 1526 184 160 5 chr4 65179107 65179483 -90450637 - Lx3C LINE L1 -2 6974 6541 3 1082 378 358 43 7 chr4 65179904 65180042 -90450078 + MIRb SINE MIR 26 168 -100 3 1082 246 239 14 14 chr4 65180351 65180423 -90449697 + L1MA10 LINE L1 5528 5599 -590 3 1082 346 270 218 10 chr4 65180431 65180527 -90449593 + RSINE1 SINE B4 3 124 -41 3 1082 516 16 0 0 chr4 65180532 65180593 -90449527 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1082 984 279 119 75 chr4 65180593 65181025 -90449095 - MT2A LTR ERVL -78 455 5 3 1082 597 283 56 28 chr4 65181318 65181341 -90448779 + B3A SINE B2 1 20 -178 3 1082 7849 35 18 8 chr4 65181341 65182302 -90447818 + L1Md_A LINE L1 5613 6582 0 3 1082 597 286 58 30 chr4 65182302 65182484 -90447636 + B3A SINE B2 21 211 -5 3 1082 1194 275 46 36 chr4 65182492 65183054 -90447066 + L1MA10 LINE L1 5760 6327 -7 3 1082 427 293 1 22 chr4 65183472 65183659 -90446461 + L1_Mur3 LINE L1 5499 5657 -634 3 1082 188 284 14 19 chr4 65184261 65184337 -90445783 + MIR SINE MIR 121 193 -75 3 1082 482 328 58 36 chr4 65184620 65184886 -90445234 - MER102c DNA MER1_type -2124 304 62 3 1082 531 0 0 0 chr4 65185095 65185154 -90444966 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1082 257 279 15 0 chr4 65185338 65185406 -90444714 - ID4 SINE ID -11 72 4 3 1082 886 140 0 60 chr4 65185419 65185601 -90444519 - L1Md_F3 LINE L1 -3 6581 6411 3 1082 1181 75 19 0 chr4 65185601 65185760 -90444360 - B2_Mm2 SINE B2 -14 181 20 3 1082 212 231 19 0 chr4 65187212 65187264 -90442856 - L2 LINE L2 -945 2474 2422 3 1082 713 115 0 34 chr4 65187853 65187970 -90442150 + BC1_Mm scRNA scRNA 1 113 -39 3 1082 606 314 69 8 chr4 65187978 65188225 -90441895 + Lx9 LINE L1 7180 7441 -203 3 1082 32 0 0 0 chr4 65188362 65188394 -90441726 + AT_rich Low_complexity Low_complexity 1 32 0 3 1082 356 333 43 0 chr4 65188401 65188563 -90441557 + Lx8 LINE L1 7142 7439 -205 3 1082 1382 92 5 0 chr4 65188947 65189143 -90440977 - L1_Mus3 LINE L1 -349 6289 6093 3 1082 2525 89 6 14 chr4 65189143 65189496 -90440624 + L1_Mus3 LINE L1 6289 6638 0 3 1082 309 26 0 0 chr4 65189583 65189621 -90440499 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1082 271 342 82 45 chr4 65189983 65190335 -90439785 - L2 LINE L2 -2227 1192 828 3 1082 183 326 0 0 chr4 65190941 65190987 -90439133 + L2c LINE L2 3268 3313 -74 3 1082 238 238 16 16 chr4 65191923 65191987 -90438133 + A-rich Low_complexity Low_complexity 4 67 0 3 1082 252 321 95 35 chr4 65193862 65193978 -90436142 + ORR1E LTR MaLR 70 192 -167 3 1082 408 345 155 66 chr4 65194310 65194561 -90435559 + B4A SINE B4 1 274 -18 3 1082 252 277 10 29 chr4 65194596 65194700 -90435420 + L1MEc LINE L1 713 814 -5586 3 1082 420 37 0 0 chr4 65194759 65194813 -90435307 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1082 273 209 113 21 chr4 65194814 65194956 -90435164 + L1MEc LINE L1 821 975 -5425 3 1082 562 316 38 13 chr4 65194979 65195136 -90434984 + RSINE1 SINE B4 5 165 0 3 1082 234 311 72 77 chr4 65195136 65195160 -90434960 + B2_Mm2 SINE B2 4 183 -12 3 1082 450 238 180 31 chr4 65195311 65195793 -90434327 + L1MEc LINE L1 1032 1584 -4816 3 1082 2313 311 36 28 chr4 65195907 65197884 -90432236 + Lx9 LINE L1 5332 7475 -169 3 1082 2869 144 146 52 chr4 65197957 65198339 -90431781 - RMER17A LTR ERVK 0 751 316 3 1082 1115 89 0 22 chr4 65198339 65198522 -90431598 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 3 1082 846 30 0 0 chr4 65198524 65198625 -90431495 + (GGAGA)n Simple_repeat Simple_repeat 1 101 0 3 1082 2869 144 146 52 chr4 65198625 65198926 -90431194 - RMER17A LTR ERVK -436 315 3 3 1082 42 36 0 0 chr4 65199008 65199064 -90431056 + AT_rich Low_complexity Low_complexity 1 56 0 3 1082 253 205 51 0 chr4 65199153 65199231 -90430889 + L1MEc LINE L1 2258 2339 -4061 3 1082 1151 15 0 0 chr4 65199225 65199359 -90430761 - L1Md_F2 LINE L1 -334 6248 6115 3 1082 2507 62 12 6 chr4 65199359 65199685 -90430435 + L1Md_F2 LINE L1 6242 6569 -13 3 1082 2055 82 45 21 chr4 65199866 65200200 -90429920 + Lx2 LINE L1 6392 6733 -264 3 1082 3456 12 0 2 chr4 65200182 65200606 -90429514 + L1_Mm LINE L1 3650 4072 -1811 3 1082 973 126 99 0 chr4 65200629 65200820 -90429300 + Lx2 LINE L1 6788 6997 0 3 1082 194 233 16 62 chr4 65202001 65202065 -90428055 - L3 LINE CR1 -1084 3405 3345 3 1082 188 404 0 50 chr4 65202196 65202295 -90427825 + MIR SINE MIR 46 139 -123 3 1082 333 322 117 14 chr4 65204017 65204162 -90425958 - MIR SINE MIR -44 218 59 3 1082 752 150 64 0 chr4 65205459 65205521 -90424599 - URR1A DNA MER1_type 0 226 165 3 1082 189 74 0 0 chr4 65205521 65205548 -90424572 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1082 752 150 64 0 chr4 65205548 65205625 -90424495 - URR1A DNA MER1_type -62 164 80 3 1082 4373 263 64 38 chr4 65205884 65208175 -90421945 + Lx9 LINE L1 4627 7123 -521 3 1082 1167 81 0 0 chr4 65208175 65208335 -90421785 + (GA)n Simple_repeat Simple_repeat 2 161 0 3 1082 3707 242 95 14 chr4 65208335 65208669 -90421451 + Lx9 LINE L1 7124 7477 -167 3 1082 309 51 0 0 chr4 65208669 65208708 -90421412 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1082 3707 242 95 14 chr4 65208708 65208827 -90421293 + Lx9 LINE L1 7478 7643 -1 3 1082 387 0 0 0 chr4 65209516 65209559 -90420561 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1082 317 297 43 35 chr4 65209906 65210021 -90420099 - MIR3 SINE MIR -8 200 85 3 1082 1169 165 14 0 chr4 65210198 65210410 -90419710 - Lx2B LINE L1 -10 6990 6776 3 1082 1238 142 17 62 chr4 65210410 65210650 -90419470 + Lx2B LINE L1 6560 6788 -212 3 1082 219 385 25 41 chr4 65211015 65211137 -90418983 + MIRc SINE MIR 40 159 -109 3 1082 465 339 20 8 chr4 65212006 65212256 -90417864 + L1MC1 LINE L1 6051 6303 -30 3 1082 1313 272 50 8 chr4 65212567 65212967 -90417153 + MTD LTR MaLR 3 419 0 3 1082 387 0 0 0 chr4 65213271 65213314 -90416806 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1082 250 403 24 5 chr4 65213471 65213683 -90416437 - MIR SINE MIR 0 262 47 3 1082 7253 62 2 24 chr4 65213697 65214703 -90415417 - L1Md_F2 LINE L1 -12 6570 5587 3 1082 271 244 143 24 chr4 65215157 65215241 -90414879 + B4 SINE B4 1 94 -198 3 1082 270 303 56 0 chr4 65215247 65215330 -90414790 + Lx9 LINE L1 7426 7516 -128 3 1082 558 0 0 0 chr4 65215330 65215392 -90414728 + (CAG)n Simple_repeat Simple_repeat 1 62 0 3 1082 270 303 56 0 chr4 65215392 65215486 -90414634 + Lx9 LINE L1 7517 7612 -32 3 1082 990 186 33 5 chr4 65215550 65215734 -90414386 - RMER6A LTR ERVK -8 748 560 3 1082 510 296 8 17 chr4 65215743 65215860 -90414260 + B4A SINE B4 115 230 -62 3 1082 2979 79 7 2 chr4 65216062 65216467 -90413653 - L1_Mus3 LINE L1 -6 6632 6226 3 1082 846 171 273 0 chr4 65217556 65217732 -90412388 + URR1A DNA MER1_type 1 224 -2 3 1082 293 330 87 0 chr4 65217802 65217917 -90412203 - Lx8 LINE L1 -465 7008 6884 3 1082 243 303 18 9 chr4 65218219 65218329 -90411791 - ID4 SINE ID -41 111 1 3 1082 365 276 9 79 chr4 65218331 65218445 -90411675 - PB1D10 SINE Alu -1 116 11 3 1082 1119 80 0 0 chr4 65218665 65218803 -90411317 + B1_Mus2 SINE Alu 1 138 -9 3 1082 303 28 0 0 chr4 65218803 65218839 -90411281 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1082 441 0 0 0 chr4 65219282 65219331 -90410789 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1082 372 22 0 0 chr4 65219331 65219375 -90410745 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1082 235 275 43 0 chr4 65220824 65220893 -90409227 - ID4 SINE ID 0 83 12 3 1082 348 24 0 0 chr4 65221210 65221251 -90408869 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1082 259 305 87 0 chr4 65221669 65221775 -90408345 - MIRb SINE MIR -6 256 143 3 1082 207 303 115 40 chr4 65221893 65222041 -90408079 - MIRb SINE MIR -91 177 19 3 1082 2992 71 73 2 chr4 65222303 65222711 -90407409 + L1_Mus3 LINE L1 6201 6637 -1 3 1082 2877 81 0 0 chr4 65222824 65223196 -90406924 - L1_Mm LINE L1 -609 5274 4903 3 1082 974 155 33 16 chr4 65223198 65223382 -90406738 + L1Md_F2 LINE L1 6392 6578 -4 3 1082 425 271 0 0 chr4 65225415 65225500 -90404620 + B1_Mur3 SINE Alu 2 86 -63 3 1082 24 0 0 0 chr4 65225500 65225524 -90404596 + AT_rich Low_complexity Low_complexity 1 24 0 3 1082 243 61 0 0 chr4 65225524 65225557 -90404563 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1082 438 69 0 0 chr4 65225587 65225645 -90404475 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 3 1082 790 259 76 27 chr4 65225650 65225912 -90404208 + B4A SINE B4 8 282 -10 3 1082 1134 218 42 42 chr4 65227530 65227817 -90402303 + B4 SINE B4 2 288 -4 3 1082 848 10 10 0 chr4 65227879 65227980 -90402140 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1082 39936 30 2 7 chr4 65228468 65234724 -90395396 - L1Md_T LINE L1 0 6582 357 3 1082 633 320 3 11 chr4 65234790 65235008 -90395112 - B3A SINE B2 0 216 2 3 1082 1096 87 12 0 chr4 65235242 65235403 -90394717 + B2_Mm2 SINE B2 2 164 -31 3 1082 345 82 0 0 chr4 65235473 65235522 -90394598 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1082 428 286 0 0 chr4 65235566 65235678 -90394442 - RSINE1 SINE B4 -35 130 19 3 1082 282 248 216 10 chr4 65235810 65235912 -90394208 - MER58A DNA MER1_type -80 144 22 4 1082 557 216 0 7 chr4 65236220 65236355 -90393765 + (TA)n Simple_repeat Simple_repeat 2 135 0 4 1082 240 283 0 131 chr4 65236552 65236674 -90393446 + L2c LINE L2 3249 3354 -33 4 1082 274 354 7 45 chr4 65236705 65236859 -90393261 + (TGG)n Simple_repeat Simple_repeat 3 150 0 4 1082 354 269 9 19 chr4 65237068 65237174 -90392946 + (ATGGTG)n Simple_repeat Simple_repeat 3 107 0 4 1082 2509 214 40 2 chr4 65237503 65238053 -90392067 - Lx3C LINE L1 0 7000 6423 4 1082 239 282 12 12 chr4 65238332 65238429 -90391691 - L1M2 LINE L1 -823 5468 5372 4 1082 21 57 0 0 chr4 65238434 65238469 -90391651 + AT_rich Low_complexity Low_complexity 1 35 0 4 1082 214 226 19 0 chr4 65239024 65239077 -90391043 - MIR SINE MIR -170 92 39 4 1082 252 59 0 0 chr4 65239660 65239694 -90390426 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 1082 234 0 0 0 chr4 65239727 65239753 -90390367 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1082 973 72 0 14 chr4 65239753 65239884 -90390236 - B1_Mm SINE Alu -10 137 7 4 1082 21 0 0 0 chr4 65239998 65240019 -90390101 + AT_rich Low_complexity Low_complexity 1 21 0 4 1082 414 257 9 9 chr4 65240497 65240509 -90389611 + ID SINE ID 70 81 -143 4 1082 619 151 9 0 chr4 65240509 65240615 -90389505 + B1_Mm SINE Alu 1 107 -40 4 1082 229 242 15 15 chr4 65241919 65241986 -90388134 - MADE2 DNA Mariner -8 72 6 4 1082 304 354 123 38 chr4 65242017 65242414 -90387706 + MLT1J1 LTR MaLR 1 431 -13 4 1082 288 297 84 8 chr4 65243962 65244081 -90386039 + RSINE1 SINE B4 3 130 -35 4 1082 677 286 27 41 chr4 65244126 65244345 -90385775 + B3 SINE B2 1 216 0 4 1082 442 332 98 5 chr4 65245181 65245384 -90384736 + MER58A DNA MER1_type 3 224 0 4 1082 284 212 57 64 chr4 65245809 65245925 -90384195 - PB1D10 SINE Alu -3 114 1 4 1082 218 307 114 66 chr4 65246651 65246878 -90383242 + L2b LINE L2 2925 3162 -213 4 1082 265 251 0 30 chr4 65247070 65247145 -90382975 - ID4_ SINE ID -75 77 5 4 1082 303 85 0 0 chr4 65247151 65247198 -90382922 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1082 721 211 0 0 chr4 65247198 65247331 -90382789 - B1_Mus1 SINE Alu -10 138 6 4 1082 232 307 56 28 chr4 65247383 65247527 -90382593 - B1F SINE Alu -1 148 1 4 1082 249 33 0 0 chr4 65248040 65248070 -90382050 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1082 21 0 0 0 chr4 65249394 65249415 -90380705 + AT_rich Low_complexity Low_complexity 1 21 0 4 1082 567 112 0 0 chr4 65249725 65249814 -90380306 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1082 224 274 73 28 chr4 65250286 65250395 -90379725 + MIR SINE MIR 48 161 -101 4 1082 777 22 0 0 chr4 65251163 65251254 -90378866 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1082 1600 271 39 70 chr4 65251982 65252498 -90377622 + RMER1B Other Other 8 507 -559 4 1082 351 0 0 0 chr4 65252498 65252537 -90377583 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1082 5039 195 62 16 chr4 65252537 65253570 -90376550 + RMER1A Other Other 1 1019 -11 4 1082 1234 42 0 0 chr4 65253587 65253729 -90376391 + B1_Mm SINE Alu 1 142 -5 4 1082 453 66 0 0 chr4 65253924 65253985 -90376135 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1082 531 0 0 0 chr4 65253985 65254043 -90376077 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1082 1428 50 22 11 chr4 65254517 65254699 -90375421 - B2_Mm2 SINE B2 -10 185 2 4 1082 739 278 194 18 chr4 65255052 65255072 -90375048 - MTD LTR MaLR -6 413 394 4 1082 204 125 0 0 chr4 65255072 65255104 -90375016 + (CTG)n Simple_repeat Simple_repeat 1 32 0 4 1082 739 278 194 18 chr4 65255104 65255424 -90374696 - MTD LTR MaLR -26 393 13 4 1082 1463 220 18 61 chr4 65255603 65256044 -90374076 + RMER10A LTR ERVL 15 436 -6 4 1082 266 330 0 81 chr4 65257537 65257559 -90372561 + ID SINE ID 11 30 -194 4 1082 2052 140 38 0 chr4 65257559 65257874 -90372246 - ORR1A4 LTR MaLR 0 329 3 4 1082 266 330 0 81 chr4 65257874 65257950 -90372170 + ID_B1 SINE B4 31 101 -123 4 1082 2327 206 90 80 chr4 65257977 65258691 -90371429 + RMER1B Other Other 288 1066 0 4 1082 729 271 0 105 chr4 65258698 65258742 -90371378 + B3 SINE B2 2 45 -171 4 1082 7765 26 3 4 chr4 65258742 65259651 -90370469 + L1Md_F2 LINE L1 5675 6582 0 4 1082 729 271 0 105 chr4 65259651 65259845 -90370275 + B3 SINE B2 46 215 -1 4 1082 487 287 97 25 chr4 65260815 65261094 -90369026 - L1MC1 LINE L1 -70 6263 5965 4 1082 231 36 0 0 chr4 65261423 65261451 -90368669 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1082 255 346 31 23 chr4 65261723 65261853 -90368267 + MLT1C LTR MaLR 337 467 0 4 1082 1787 194 6 12 chr4 65261954 65262283 -90367837 + Lx4B LINE L1 6729 7055 -3 4 1082 676 200 0 7 chr4 65262291 65262427 -90367693 - URR1B DNA MER1_type -8 217 83 4 1082 23 0 0 0 chr4 65262617 65262640 -90367480 + AT_rich Low_complexity Low_complexity 1 23 0 4 1082 190 197 49 0 chr4 65262838 65262899 -90367221 + (CATA)n Simple_repeat Simple_repeat 2 65 0 4 1082 1178 263 81 31 chr4 65263781 65264162 -90365958 - MTD LTR MaLR 0 419 20 4 1082 218 156 16 0 chr4 65264169 65264233 -90365887 + A-rich Low_complexity Low_complexity 1 65 0 4 1082 842 290 90 33 chr4 65264449 65264906 -90365214 - RMER5 LTR ERV1 -51 483 1 4 1082 188 0 74 0 chr4 65267031 65267058 -90363062 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 4 1082 303 267 160 113 chr4 65267561 65267755 -90362365 + MER20 DNA MER1_type 5 207 -12 4 1082 223 292 191 27 chr4 65267762 65267800 -90362320 + MIRb SINE MIR 35 72 -196 4 1082 357 24 0 0 chr4 65267800 65267842 -90362278 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1082 223 292 191 27 chr4 65267842 65267986 -90362134 + MIRb SINE MIR 73 247 -21 4 1082 1041 83 7 0 chr4 65268976 65269121 -90360999 - B1_Mus1 SINE Alu -1 147 2 4 1082 252 0 0 0 chr4 65270609 65270637 -90359483 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1082 1152 47 0 39 chr4 65270637 65270791 -90359329 - B1_Mus1 SINE Alu 0 148 1 4 1082 486 49 0 0 chr4 65270934 65270995 -90359125 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1082 384 368 13 13 chr4 65272235 65272392 -90357728 + Tigger12c DNA MER2_type 8 164 -570 4 1082 555 16 0 0 chr4 65272800 65272864 -90357256 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1083 330 26 0 0 chr4 65273949 65273988 -90356132 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1083 279 54 0 0 chr4 65278675 65278712 -90351408 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1083 196 270 31 73 chr4 65280085 65280181 -90349939 + MIRb SINE MIR 112 203 -65 4 1083 317 342 70 31 chr4 65281832 65282103 -90348017 + LTR52 LTR ERVL 76 418 -3 4 1083 352 314 84 13 chr4 65282328 65282483 -90347637 + HERVL74-int LTR ERVL 349 514 -3042 4 1083 2618 279 45 37 chr4 65282718 65283787 -90346333 + HERVL74-int LTR ERVL 896 2053 -3632 4 1083 608 157 0 9 chr4 65283789 65283905 -90346215 + B2_Mm2 SINE B2 79 193 -2 4 1083 355 269 37 0 chr4 65283971 65284079 -90346041 + HERVL74-int LTR ERVL 2280 2391 -1165 4 1083 420 303 60 8 chr4 65284179 65284312 -90345808 + HERVL74-int LTR ERVL 2547 2686 -870 4 1083 621 310 98 25 chr4 65284324 65284775 -90345345 + HERVL74-int LTR ERVL 2566 3238 -318 4 1083 391 240 68 60 chr4 65284921 65285054 -90345066 + HERVL74-int LTR ERVL 3423 3556 0 4 1083 441 290 40 79 chr4 65285057 65285285 -90344835 + LTR52 LTR ERVL 4 222 -199 4 1083 486 261 0 0 chr4 65285285 65285400 -90344720 + Lx9 LINE L1 7244 7358 -286 4 1083 240 163 0 20 chr4 65285417 65285467 -90344653 + Lx9 LINE L1 7525 7573 -71 4 1083 11415 153 13 26 chr4 65285472 65285716 -90344404 + L1_Mus3 LINE L1 3909 4155 -1731 4 1083 1322 41 0 0 chr4 65285716 65285862 -90344258 + B1_Mm SINE Alu 1 146 -1 4 1083 11415 125 15 16 chr4 65285862 65288268 -90341852 + L1_Mus3 LINE L1 4156 6549 -89 4 1083 180 0 0 0 chr4 65288268 65288288 -90341832 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 4 1083 7881 82 19 0 chr4 65288288 65288369 -90341751 + L1_Mus3 LINE L1 6550 6630 -8 4 1083 8844 138 17 12 chr4 65288357 65290042 -90340078 + Lx2B LINE L1 5283 6969 -31 4 1083 596 50 0 12 chr4 65290042 65290123 -90339997 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 4 1083 6801 65 13 0 chr4 65292074 65292924 -90337196 + L1_Mus1 LINE L1 5704 6564 -3 4 1083 268 306 35 0 chr4 65293831 65293916 -90336204 + MIRb SINE MIR 35 122 -146 4 1083 491 333 5 39 chr4 65294224 65294427 -90335693 - MIRb SINE MIR 0 268 73 4 1083 1736 21 11 0 chr4 65294648 65294836 -90335284 - B2_Mm1a SINE B2 -3 190 1 4 1083 407 222 20 10 chr4 65295216 65295316 -90334804 + Lx9 LINE L1 7542 7642 -2 4 1083 216 86 0 0 chr4 65296124 65296159 -90333961 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1083 248 392 8 8 chr4 65296296 65296422 -90333698 - MER117 DNA MER1_type -49 148 23 4 1083 184 305 17 0 chr4 65296423 65296482 -90333638 + L3 LINE CR1 4427 4486 -3 4 1083 646 320 42 45 chr4 65296692 65296957 -90333163 + MIRc SINE MIR 2 265 -3 4 1083 284 357 64 80 chr4 65298047 65298174 -90331946 - L2 LINE L2 -492 2927 2805 4 1083 862 290 111 35 chr4 65298174 65298649 -90331471 + MLT2B4 LTR ERVL 1 502 -54 4 1083 510 17 0 0 chr4 65298649 65298708 -90331412 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1083 862 290 111 35 chr4 65298708 65298746 -90331374 + MLT2B4 LTR ERVL 503 553 -3 4 1083 284 357 64 80 chr4 65298746 65298995 -90331125 - L2 LINE L2 -615 2804 2557 4 1083 311 294 49 6 chr4 65299238 65299402 -90330718 - L2 LINE L2 -1212 2207 2037 4 1083 255 349 0 0 chr4 65299920 65300046 -90330074 + CT-rich Low_complexity Low_complexity 4 129 0 4 1083 366 197 0 0 chr4 65300663 65300729 -90329391 + RLTR25A LTR ERVK 1 66 -1037 4 1083 4453 152 108 13 chr4 65300726 65301006 -90329114 + RLTR25A LTR ERVK 178 504 -599 4 1083 212 0 36 0 chr4 65301006 65301034 -90329086 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1083 4453 152 108 13 chr4 65301034 65301598 -90328522 + RLTR25A LTR ERVK 505 1101 -2 4 1083 185 0 40 0 chr4 65303079 65303104 -90327016 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1083 1127 106 0 0 chr4 65303104 65303245 -90326875 - B1_Mus1 SINE Alu -7 141 1 4 1083 804 96 0 0 chr4 65304426 65304541 -90325579 + (GGGAA)n Simple_repeat Simple_repeat 4 118 0 4 1083 308 294 9 52 chr4 65304544 65304659 -90325461 + MIRb SINE MIR 38 147 -121 4 1083 624 321 45 49 chr4 65304694 65304982 -90325138 + B4A SINE B4 4 290 -2 4 1083 317 226 60 0 chr4 65306714 65306798 -90323322 + MER34-int LTR ERV1 8110 8198 -9 4 1083 21 0 0 0 chr4 65307543 65307564 -90322556 + AT_rich Low_complexity Low_complexity 1 21 0 4 1083 419 125 19 19 chr4 65307590 65307696 -90322424 + (TA)n Simple_repeat Simple_repeat 1 106 0 5 1083 346 309 44 22 chr4 65308066 65308210 -90321910 + MIR3 SINE MIR 37 181 -81 5 1083 30 0 0 0 chr4 65308689 65308719 -90321401 + AT_rich Low_complexity Low_complexity 1 30 0 5 1083 230 279 57 29 chr4 65309879 65309949 -90320171 + MER58A DNA MER1_type 87 158 -66 5 1083 189 0 0 0 chr4 65310339 65310360 -90319760 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1083 950 264 19 0 chr4 65311526 65311738 -90318382 - B3 SINE B2 0 216 1 5 1083 199 331 202 0 chr4 65313176 65313339 -90316781 + MIRb SINE MIR 27 222 -46 5 1083 215 255 37 47 chr4 65313778 65313885 -90316235 + L3 LINE CR1 4293 4398 -91 5 1083 267 31 0 0 chr4 65316168 65316200 -90313920 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1083 367 80 53 0 chr4 65316200 65316275 -90313845 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1083 1019 84 7 20 chr4 65316676 65316822 -90313298 - L1_Mus1 LINE L1 -1 6566 6423 5 1083 1270 291 52 21 chr4 65317649 65318129 -90311991 + RMER5 LTR ERV1 40 534 0 5 1083 822 81 0 0 chr4 65318453 65318555 -90311565 + L1_Mm LINE L1 4529 4630 -1253 5 1083 3384 46 5 2 chr4 65318555 65318951 -90311169 + L1Md_F2 LINE L1 6183 6579 -3 5 1083 5573 71 0 4 chr4 65319334 65320017 -90310103 + L1_Mus1 LINE L1 5888 6567 0 5 1083 249 108 0 0 chr4 65320034 65320071 -90310049 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1083 717 12 0 0 chr4 65320835 65320917 -90309203 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1083 279 0 0 0 chr4 65320935 65320966 -90309154 + (TATG)n Simple_repeat Simple_repeat 2 32 0 5 1083 299 186 154 55 chr4 65320966 65321050 -90309070 - Lx2B LINE L1 -18 6979 6885 5 1083 2211 103 29 46 chr4 65321120 65321465 -90308655 - L1Md_F2 LINE L1 -1 6581 6243 5 1083 616 91 9 9 chr4 65321590 65321701 -90308419 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1083 180 0 0 0 chr4 65321701 65321720 -90308400 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1083 270 0 0 0 chr4 65321720 65321750 -90308370 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1083 265 302 68 30 chr4 65321968 65322101 -90308019 + LTR81A LTR ERV1? 259 396 -954 5 1083 1039 63 0 0 chr4 65322272 65322398 -90307722 - L1Md_F2 LINE L1 -316 6266 6141 5 1083 2463 58 3 46 chr4 65322398 65322726 -90307394 + L1Md_F2 LINE L1 6257 6570 -12 5 1083 204 336 60 45 chr4 65323274 65323408 -90306712 + L2b LINE L2 2670 2805 -614 5 1083 404 315 24 0 chr4 65323425 65323552 -90306568 + RSINE1 SINE B4 2 131 -34 5 1083 1017 84 21 12 chr4 65323559 65323806 -90306314 + (CA)n Simple_repeat Simple_repeat 1 249 0 5 1083 25 0 0 0 chr4 65323809 65323834 -90306286 + AT_rich Low_complexity Low_complexity 1 25 0 5 1083 238 314 43 0 chr4 65323924 65323994 -90306126 - MLT1D LTR MaLR -82 423 351 5 1083 391 272 148 41 chr4 65324086 65324255 -90305865 - MLT1D LTR MaLR -297 208 22 5 1083 265 345 7 75 chr4 65324389 65324536 -90305584 + L2b LINE L2 3238 3374 -1 5 1083 294 253 134 37 chr4 65324742 65324824 -90305296 - RSINE1 SINE B4 -33 132 43 5 1083 648 326 59 0 chr4 65326425 65326612 -90303508 - ID_B1 SINE B4 -21 203 6 5 1083 1960 174 65 8 chr4 65326643 65327026 -90303094 - Lx9 LINE L1 -13 7631 7227 5 1083 743 211 20 0 chr4 65327021 65327173 -90302947 + Lx9 LINE L1 7061 7215 -429 5 1083 351 296 56 87 chr4 65327229 65327425 -90302695 + MIRb SINE MIR 68 257 -11 5 1083 30 27 0 0 chr4 65328857 65328894 -90301226 + AT_rich Low_complexity Low_complexity 1 37 0 5 1083 2503 80 21 3 chr4 65328901 65329227 -90300893 - L1_Mus3 LINE L1 -8 6630 6299 5 1083 476 111 0 0 chr4 65329227 65329290 -90300830 + L1_Mus3 LINE L1 6215 6277 -361 5 1083 192 125 0 0 chr4 65329296 65329328 -90300792 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1083 3737 70 0 15 chr4 65329347 65329822 -90300298 - L1Md_F2 LINE L1 -3 6579 6112 5 1083 1129 248 0 5 chr4 65329920 65330135 -90299985 - B3 SINE B2 -1 215 2 5 1083 520 306 35 0 chr4 65330187 65330331 -90299789 + B1F SINE Alu 1 149 0 5 1083 441 0 0 0 chr4 65330357 65330406 -90299714 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1083 583 339 31 20 chr4 65330750 65330946 -90299174 + B4 SINE B4 2 199 -93 5 1083 608 227 56 6 chr4 65331093 65331257 -90298863 + B3 SINE B2 17 196 -2 5 1083 1838 288 81 51 chr4 65331314 65332308 -90297812 + L1MC1 LINE L1 4276 5298 -848 5 1083 960 316 78 31 chr4 65332479 65333294 -90296826 + L1MC1 LINE L1 5488 6316 -17 5 1083 532 326 22 52 chr4 65333373 65333603 -90296517 + MER58A DNA MER1_type 2 224 0 5 1083 861 301 18 67 chr4 65334191 65334519 -90295601 + MLT1B LTR MaLR 79 390 0 5 1083 304 273 185 35 chr4 65334579 65334881 -90295239 + MLT1C LTR MaLR 105 450 -17 5 1083 203 0 0 36 chr4 65336029 65336057 -90294063 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1083 219 287 64 85 chr4 65336266 65336407 -90293713 + MIRb SINE MIR 116 253 -15 5 1083 212 289 63 42 chr4 65336505 65336600 -90293520 + MIR SINE MIR 109 210 -58 5 1083 308 324 88 0 chr4 65337204 65337306 -90292814 - PB1D10 SINE Alu -6 111 1 5 1083 603 0 0 0 chr4 65337323 65337390 -90292730 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 5 1083 590 256 28 42 chr4 65337428 65337571 -90292549 - RSINE1 SINE B4 -22 143 3 5 1083 7898 38 1 7 chr4 65337587 65339070 -90291050 - L1Md_F2 LINE L1 0 6582 5108 5 1083 2910 186 88 100 chr4 65340668 65341581 -90288539 + RLTR13D6 LTR ERVK 1 902 0 5 1083 382 337 103 57 chr4 65341639 65342069 -90288051 - L2c LINE L2 -168 3219 2772 5 1083 207 0 0 0 chr4 65342482 65342505 -90287615 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1083 642 237 48 189 chr4 65342701 65343097 -90287023 + MER58B DNA MER1_type 1 340 -1 5 1083 330 301 0 31 chr4 65343119 65343215 -90286905 - MIRb SINE MIR -81 187 95 5 1083 216 0 0 0 chr4 65343270 65343294 -90286826 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 1083 511 308 65 96 chr4 65343313 65343604 -90286516 - B4A SINE B4 0 292 11 5 1083 997 113 12 0 chr4 65343615 65343783 -90286337 + (TTCC)n Simple_repeat Simple_repeat 3 172 0 5 1083 545 215 88 7 chr4 65343783 65343919 -90286201 - B1_Mm SINE Alu 0 147 1 5 1083 330 26 0 0 chr4 65344191 65344230 -90285890 - U2 snRNA snRNA -149 39 1 5 1083 473 282 49 7 chr4 65344330 65344473 -90285647 + B1F1 SINE Alu 1 149 0 5 1083 253 307 42 47 chr4 65345289 65345421 -90284699 - MIRb SINE MIR -94 174 40 5 1083 374 331 158 26 chr4 65346494 65346798 -90283322 + L1MC4a LINE L1 5544 5887 -1995 5 1083 23 0 0 0 chr4 65346917 65346940 -90283180 + AT_rich Low_complexity Low_complexity 1 23 0 5 1083 477 0 0 0 chr4 65347355 65347408 -90282712 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1083 214 246 0 30 chr4 65347506 65347573 -90282547 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 5 1083 468 0 0 0 chr4 65348112 65348164 -90281956 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1083 226 185 46 0 chr4 65348298 65348363 -90281757 + GA-rich Low_complexity Low_complexity 1 68 0 5 1083 191 295 79 79 chr4 65348476 65348590 -90281530 - L2a LINE L2 -29 3397 3284 5 1083 261 0 0 0 chr4 65348687 65348716 -90281404 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 5 1083 31582 79 22 2 chr4 65348717 65353408 -90276712 - L1Md_F2 LINE L1 0 6582 1978 5 1083 180 0 0 0 chr4 65353408 65353428 -90276692 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1083 31582 81 16 1 chr4 65353428 65354189 -90275931 - L1Md_F2 LINE L1 -3906 1977 1204 5 1083 4271 147 72 13 chr4 65354199 65355252 -90274868 - L1Md_F LINE L1 -5436 1288 193 5 1083 198 344 98 21 chr4 65355258 65355451 -90274669 + L2 LINE L2 1908 2115 -1304 5 1083 568 355 97 23 chr4 65355578 65355835 -90274285 + MLT1A0 LTR MaLR 1 276 -89 5 1083 690 24 0 0 chr4 65355844 65355928 -90274192 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 5 1083 243 345 137 10 chr4 65356386 65356679 -90273441 - L2 LINE L2 -1418 2001 1672 5 1083 207 0 0 0 chr4 65357531 65357554 -90272566 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1083 189 388 82 0 chr4 65358250 65358335 -90271785 + MIRm SINE MIR 166 257 -19 5 1083 224 406 47 0 chr4 65360507 65360613 -90269507 - MIR3 SINE MIR -48 160 50 5 1083 188 304 49 37 chr4 65360888 65360970 -90269150 - MIR SINE MIR -179 83 1 5 1083 212 208 19 19 chr4 65361164 65361218 -90268902 + (CATG)n Simple_repeat Simple_repeat 1 54 0 5 1083 861 62 0 0 chr4 65361769 65361881 -90268239 + (GGA)n Simple_repeat Simple_repeat 1 112 0 5 1083 191 400 43 77 chr4 65362582 65362608 -90267512 + L3 LINE CR1 3047 3068 -1421 5 1083 198 0 0 0 chr4 65362608 65362630 -90267490 + (CAGG)n Simple_repeat Simple_repeat 2 23 0 5 1083 191 400 43 77 chr4 65362630 65362955 -90267165 + L3 LINE CR1 3069 3386 -1103 5 1083 311 306 10 39 chr4 65363511 65363613 -90266507 - MER5A1 DNA MER1_type -61 105 9 5 1083 292 304 38 75 chr4 65363635 65363795 -90266325 - MER5A1 DNA MER1_type -8 158 5 5 1083 495 0 0 0 chr4 65364030 65364085 -90266035 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1083 414 108 0 0 chr4 65364085 65364159 -90265961 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1083 1137 141 20 25 chr4 65364195 65364391 -90265729 - B2_Mm2 SINE B2 0 195 1 5 1083 23 33 0 0 chr4 65364651 65364681 -90265439 + AT_rich Low_complexity Low_complexity 1 30 0 5 1083 466 310 11 0 chr4 65364797 65364984 -90265136 - Lx9 LINE L1 -157 7487 7299 5 1083 617 321 116 29 chr4 65365251 65365597 -90264523 + MLT1A1 LTR MaLR 26 401 -7 5 1083 3537 112 20 2 chr4 65366452 65367006 -90263114 - L1_Mm LINE L1 -54 5829 5266 5 1083 1474 79 5 9 chr4 65367006 65367222 -90262898 + L1_Mus4 LINE L1 6421 6635 -1 5 1083 198 0 0 0 chr4 65369046 65369068 -90261052 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1083 305 356 0 0 chr4 65369377 65369467 -90260653 - BLACKJACK DNA AcHobo -2854 90 1 5 1083 758 299 9 47 chr4 65369490 65369701 -90260419 + B4A SINE B4 9 211 -81 6 1083 1549 278 105 11 chr4 65369701 65370188 -90259932 + Lx8 LINE L1 6471 7007 -466 6 1083 278 26 26 0 chr4 65370188 65370227 -90259893 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1083 1549 273 382 52 chr4 65370227 65370499 -90259621 + Lx8 LINE L1 7008 7376 -97 6 1083 964 210 42 9 chr4 65370499 65370715 -90259405 - URR1B DNA MER1_type 0 225 3 6 1083 510 271 162 67 chr4 65370715 65370810 -90259310 + Lx8 LINE L1 7377 7470 -3 6 1083 306 186 0 181 chr4 65371465 65371570 -90258550 + MT2B LTR ERVL 155 240 -361 6 1083 581 155 82 57 chr4 65371479 65371601 -90258519 + B1_Mur4 SINE Alu 1 114 -36 6 1083 423 0 0 0 chr4 65371603 65371650 -90258470 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 6 1083 251 345 57 40 chr4 65371902 65372026 -90258094 - MIRb SINE MIR -135 133 8 6 1083 207 0 0 0 chr4 65372709 65372732 -90257388 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1083 254 415 8 0 chr4 65372837 65372955 -90257165 + MIR SINE MIR 22 140 -122 6 1083 396 293 50 0 chr4 65372974 65373073 -90257047 + PB1D10 SINE Alu 4 107 -10 6 1083 890 0 22 30 chr4 65373082 65373216 -90256904 + (GAGAA)n Simple_repeat Simple_repeat 5 137 0 6 1083 460 299 94 54 chr4 65373377 65373600 -90256520 - RMER2 LTR ERV1 -28 539 308 6 1083 310 350 132 41 chr4 65374187 65374551 -90255569 + L2a LINE L2 2445 2841 -578 6 1083 313 279 161 44 chr4 65374755 65375003 -90255117 - B4A SINE B4 -12 280 4 6 1083 301 343 96 17 chr4 65375072 65375312 -90254808 + L2a LINE L2 3044 3302 -124 6 1083 1416 68 21 0 chr4 65375726 65375917 -90254203 + B2_Mm2 SINE B2 1 195 0 6 1083 441 36 0 0 chr4 65375961 65376016 -90254104 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1083 491 0 17 0 chr4 65376019 65376078 -90254042 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1083 956 251 105 23 chr4 65376519 65376862 -90253258 + Lx8 LINE L1 7098 7468 -5 6 1083 252 312 0 0 chr4 65376797 65376874 -90253246 + RMER1C Other Other 1251 1327 -15 6 1083 799 286 90 156 chr4 65377052 65377565 -90252555 + MER67D LTR ERV1 36 514 0 6 1083 387 302 141 5 chr4 65377574 65377780 -90252340 + L1MC3 LINE L1 7551 7784 -1 6 1083 21 36 0 0 chr4 65377976 65378004 -90252116 + AT_rich Low_complexity Low_complexity 1 28 0 6 1083 794 287 57 9 chr4 65378054 65378265 -90251855 - B4A SINE B4 -15 277 57 6 1083 240 86 0 0 chr4 65378384 65378419 -90251701 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1083 258 179 0 0 chr4 65379899 65379955 -90250165 + (CCA)n Simple_repeat Simple_repeat 2 57 0 6 1083 873 279 29 116 chr4 65380568 65380981 -90249139 + MamRep434 DNA TcMar 21 397 -29 6 1083 297 0 0 0 chr4 65381385 65381418 -90248702 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1083 1211 41 0 7 chr4 65381491 65381637 -90248483 + B1_Mus2 SINE Alu 2 146 -1 6 1083 346 319 0 8 chr4 65382304 65382421 -90247699 + MER5A1 DNA MER1_type 51 166 0 6 1083 1382 50 6 0 chr4 65382661 65382840 -90247280 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1083 1126 85 0 0 chr4 65382847 65382988 -90247132 - B1_Mus1 SINE Alu -7 141 1 6 1083 396 179 0 0 chr4 65383479 65383557 -90246563 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 1083 414 0 0 0 chr4 65384015 65384061 -90246059 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 1083 585 42 0 0 chr4 65384571 65384643 -90245477 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1083 284 188 16 0 chr4 65386781 65386845 -90243275 + GA-rich Low_complexity Low_complexity 1 65 0 6 1083 1427 222 22 91 chr4 65388464 65388870 -90241250 + ORR1C1 LTR MaLR 1 378 0 6 1083 615 332 25 4 chr4 65392776 65393054 -90237066 - L1MC LINE L1 -2093 5789 5506 6 1083 301 294 62 16 chr4 65393166 65393294 -90236826 - L1M5 LINE L1 -816 5330 5197 6 1083 253 351 62 21 chr4 65393700 65393796 -90236324 - B2_Mm2 SINE B2 -95 100 1 6 1083 573 15 0 0 chr4 65393891 65393957 -90236163 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1083 300 333 0 11 chr4 65394347 65394435 -90235685 + MIR SINE MIR 26 112 -150 6 1083 1800 238 19 0 chr4 65394539 65394913 -90235207 - MTD LTR MaLR -2 417 37 6 1083 207 0 0 0 chr4 65394913 65394936 -90235184 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1083 2850 67 0 0 chr4 65395087 65395446 -90234674 + L1_Mus1 LINE L1 6209 6567 0 6 1083 339 297 58 25 chr4 65395872 65395938 -90234182 - L1M5 LINE L1 -2986 3160 3090 6 1083 258 105 0 0 chr4 65395938 65395976 -90234144 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1083 339 297 58 25 chr4 65395976 65396030 -90234090 - L1M5 LINE L1 -3057 3089 3036 6 1083 324 48 0 0 chr4 65396205 65396247 -90233873 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1083 392 0 21 0 chr4 65396247 65396294 -90233826 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1083 491 299 76 13 chr4 65396665 65396889 -90233231 + MIRb SINE MIR 29 266 -2 6 1083 311 299 0 0 chr4 65397760 65397847 -90232273 + MLT1D LTR MaLR 407 493 -12 6 1083 190 309 59 49 chr4 65398631 65398733 -90231387 - MIRb SINE MIR -73 195 93 6 1083 299 317 16 16 chr4 65399016 65399141 -90230979 + GA-rich Low_complexity Low_complexity 4 128 0 6 1083 646 169 150 0 chr4 65399773 65399933 -90230187 + MERVL_2A-int LTR ERVL 5443 5626 -135 6 1083 347 164 13 40 chr4 65399935 65400011 -90230109 + ORR1E-int LTR MaLR 567 640 -1323 6 1083 3655 143 10 36 chr4 65400049 65400666 -90229454 + MT2B LTR ERVL 1 601 0 6 1083 1340 277 20 14 chr4 65400666 65401017 -90229103 + ORR1E LTR MaLR 7 359 0 6 1083 823 265 5 68 chr4 65401398 65401617 -90228503 - B3 SINE B2 -6 210 6 6 1083 226 239 0 0 chr4 65401897 65401943 -90228177 + L4 LINE RTE 1783 1828 -201 6 1083 1678 247 24 21 chr4 65402537 65402913 -90227207 + ORR1C2 LTR MaLR 8 384 0 6 1083 530 248 57 8 chr4 65403131 65403253 -90226867 + ID_B1 SINE B4 87 214 -10 6 1083 26 0 0 0 chr4 65403386 65403412 -90226708 + AT_rich Low_complexity Low_complexity 1 26 0 6 1083 288 240 13 51 chr4 65403835 65403914 -90226206 - L2a LINE L2 -9 3417 3342 6 1083 302 313 150 0 chr4 65403981 65404128 -90225992 - MIRb SINE MIR -16 252 84 6 1083 519 281 91 45 chr4 65404173 65404393 -90225727 + MIR SINE MIR 33 262 0 6 1084 339 137 0 88 chr4 65404978 65405058 -90225062 - MIR SINE MIR -109 153 81 6 1084 221 265 172 15 chr4 65405164 65405298 -90224822 - MIRc SINE MIR -101 167 13 6 1084 194 217 115 16 chr4 65405693 65405754 -90224366 - L3 LINE CR1 -1194 3295 3229 6 1084 193 283 57 0 chr4 65405932 65405985 -90224135 - L2a LINE L2 -20 3406 3351 6 1084 988 66 11 46 chr4 65406115 65406289 -90223831 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 6 1084 2350 78 50 6 chr4 65406806 65407166 -90222954 - L1_Mus3 LINE L1 0 6638 6263 6 1084 420 242 137 0 chr4 65407721 65407845 -90222275 + MIR SINE MIR 49 189 -73 6 1084 438 36 0 0 chr4 65408571 65408627 -90221493 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1084 343 324 104 21 chr4 65409216 65409408 -90220712 + MLT1C LTR MaLR 13 220 -285 6 1084 700 289 70 18 chr4 65409408 65409693 -90220427 + Lx8 LINE L1 6871 7170 -303 6 1084 1175 266 97 9 chr4 65409768 65410109 -90220011 + MTE2b LTR MaLR 1 371 -8 6 1084 1369 213 88 34 chr4 65410104 65410458 -90219662 + MT2A LTR ERVL 75 535 -21 6 1084 404 338 80 48 chr4 65410689 65410840 -90219280 + MLT1C LTR MaLR 203 365 -102 6 1084 2224 109 16 0 chr4 65410840 65411162 -90218958 - ORR1A2 LTR MaLR 0 327 1 6 1084 404 338 80 48 chr4 65411162 65411259 -90218861 + MLT1C LTR MaLR 366 458 -9 6 1084 180 0 0 0 chr4 65411377 65411397 -90218723 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1084 30 0 0 0 chr4 65411472 65411502 -90218618 + AT_rich Low_complexity Low_complexity 1 30 0 6 1084 295 337 46 54 chr4 65411545 65411860 -90218260 + ORR1D2 LTR MaLR 55 372 -7 6 1084 197 213 312 14 chr4 65411906 65412044 -90218076 - MIR3 SINE MIR -23 185 7 6 1084 190 250 0 126 chr4 65412444 65412531 -90217589 - L2a LINE L2 -93 3333 3258 6 1084 389 294 38 17 chr4 65412670 65412905 -90217215 - L1MDa LINE L1 -1573 4964 4725 6 1084 566 286 0 32 chr4 65412934 65413122 -90216998 + B3A SINE B2 1 182 -16 6 1084 203 138 0 0 chr4 65413279 65413308 -90216812 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 6 1084 1340 180 246 29 chr4 65413338 65413716 -90216404 - RMER6B LTR ERVK -1 460 1 6 1084 608 316 219 29 chr4 65413760 65414285 -90215835 - ORR1E-int LTR MaLR -954 626 2 6 1084 440 287 72 32 chr4 65414286 65414606 -90215514 - ORR1E LTR MaLR 0 379 6 6 1084 535 327 86 41 chr4 65414674 65415012 -90215108 + MLT1A0 LTR MaLR 13 365 0 6 1084 5353 102 63 5 chr4 65415052 65415919 -90214201 + Lx LINE L1 5732 6649 -5 6 1084 339 298 90 43 chr4 65416020 65416343 -90213777 - L1MDa LINE L1 -3487 3050 2713 6 1084 417 275 143 51 chr4 65416394 65416961 -90213159 - L1MDa LINE L1 -3991 2642 2024 6 1084 291 216 214 11 chr4 65416986 65417075 -90213045 - PB1D10 SINE Alu -5 112 6 6 1084 222 186 0 65 chr4 65417042 65417088 -90213032 - B4A SINE B4 -169 123 81 6 1084 559 330 112 88 chr4 65417088 65417262 -90212858 - L1MDa LINE L1 -4600 2033 1866 6 1084 649 241 7 0 chr4 65417262 65417399 -90212721 + B1_Mur3 SINE Alu 2 139 -10 6 1084 559 330 112 88 chr4 65417399 65417920 -90212200 - L1MDa LINE L1 -4768 1865 1287 6 1084 264 59 0 0 chr4 65417920 65417954 -90212166 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 1084 559 330 112 88 chr4 65417954 65418672 -90211448 - L1MDa LINE L1 -5347 1286 585 6 1084 303 344 37 68 chr4 65418711 65418873 -90211247 - L1MDa LINE L1 -6242 391 235 6 1084 807 11 0 0 chr4 65418899 65418991 -90211129 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1084 477 0 0 0 chr4 65418991 65419043 -90211077 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1084 419 277 100 13 chr4 65419135 65419285 -90210835 + MER58C DNA MER1_type 40 202 -13 6 1084 199 318 0 15 chr4 65419380 65419447 -90210673 - L2 LINE L2 -569 2850 2785 6 1084 224 287 65 54 chr4 65420831 65420923 -90209197 + MIR3 SINE MIR 96 188 -20 6 1084 364 279 12 0 chr4 65421078 65421164 -90208956 - MIR SINE MIR -65 143 57 6 1084 188 140 77 39 chr4 65421168 65421220 -90208900 + L3b LINE CR1 160 213 -269 6 1084 202 138 0 0 chr4 65421393 65421422 -90208698 - L2b LINE L2 -12 3363 3335 6 1084 1801 159 8 74 chr4 65421525 65421877 -90208243 + ORR1A4 LTR MaLR 1 329 0 7 1084 321 257 0 0 chr4 65422724 65422794 -90207326 - ID4_ SINE ID -3 80 11 7 1084 213 219 15 59 chr4 65422734 65422802 -90207318 - B4 SINE B4 -221 71 7 7 1084 206 356 70 70 chr4 65422919 65423161 -90206959 + MIRb SINE MIR 16 257 -11 7 1084 1176 293 90 57 chr4 65423654 65423965 -90206155 + L1MB2 LINE L1 5296 5595 -576 7 1084 702 35 0 0 chr4 65423965 65424050 -90206070 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 1084 1176 293 90 57 chr4 65424050 65424546 -90205574 + L1MB2 LINE L1 5596 6130 -41 7 1084 1117 261 123 12 chr4 65424547 65424881 -90205239 + MTE2b LTR MaLR 1 371 -8 7 1084 503 280 78 11 chr4 65425805 65425996 -90204124 - MIR SINE MIR 0 262 59 7 1084 1088 277 59 0 chr4 65426400 65426757 -90203363 + MTEb LTR MaLR 1 378 -1 7 1084 221 365 0 12 chr4 65427059 65427145 -90202975 - MIR SINE MIR -73 189 105 7 1084 571 349 57 30 chr4 65427298 65427561 -90202559 - MER21B LTR ERV1 -82 781 512 7 1084 246 310 178 13 chr4 65427504 65427661 -90202459 - MER77 LTR ERVL -6 601 419 7 1084 545 277 26 118 chr4 65427732 65427911 -90202209 - MER21B LTR ERV1 -592 271 114 7 1084 346 284 34 6 chr4 65427911 65428017 -90202103 + PB1D10 SINE Alu 2 116 -33 7 1084 555 323 58 37 chr4 65428019 65428223 -90201897 + ID_B1 SINE B4 1 216 -76 7 1084 262 327 134 18 chr4 65428343 65428455 -90201665 - MIR SINE MIR -137 131 7 7 1084 360 0 0 0 chr4 65428864 65428904 -90201216 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1084 249 247 61 10 chr4 65430122 65430220 -90199900 + L1ME3B LINE L1 6077 6179 -61 7 1084 280 296 0 143 chr4 65430434 65430560 -90199560 + PB1D10 SINE Alu 1 108 -9 7 1084 594 103 0 0 chr4 65431124 65431211 -90198909 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 7 1084 533 243 21 120 chr4 65431463 65431697 -90198423 - B3 SINE B2 -4 212 2 7 1084 209 220 20 0 chr4 65432784 65432834 -90197286 + (CACCAT)n Simple_repeat Simple_repeat 5 55 0 7 1084 378 335 101 20 chr4 65432854 65433052 -90197068 - MIRb SINE MIR -1 267 54 7 1084 214 362 68 34 chr4 65434140 65434346 -90195774 + MIRb SINE MIR 36 248 -20 7 1084 219 350 21 0 chr4 65435411 65435508 -90194612 + MIR SINE MIR 115 213 -49 7 1084 1599 5 0 0 chr4 65435684 65435888 -90194232 + (TTC)n Simple_repeat Simple_repeat 1 204 0 7 1084 340 111 32 0 chr4 65435892 65435955 -90194165 + (TCC)n Simple_repeat Simple_repeat 3 67 0 7 1084 762 115 223 0 chr4 65435960 65436108 -90194012 - B2_Mm2 SINE B2 -14 181 1 7 1084 310 319 16 40 chr4 65436345 65436469 -90193651 + B2_Mm1t SINE B2 6 126 -67 7 1084 531 0 0 0 chr4 65436491 65436550 -90193570 + (TTTTG)n Simple_repeat Simple_repeat 4 62 0 7 1084 36142 38 0 1 chr4 65436585 65440206 -90189914 - L1Md_T LINE L1 -12 6573 2959 7 1084 4176 13 0 0 chr4 65440206 65440674 -90189446 - L1Md_A LINE L1 0 6582 6115 7 1084 36142 45 12 7 chr4 65440674 65443220 -90186900 - L1Md_T LINE L1 -2928 2958 301 7 1084 326 290 118 24 chr4 65443299 65443426 -90186694 + MTEa-int LTR MaLR 311 449 -1131 7 1084 1961 315 95 47 chr4 65443414 65444349 -90185771 + MTEa-int LTR MaLR 599 1578 -2 7 1084 307 290 71 53 chr4 65444358 65444471 -90185649 + MTEa LTR MaLR 9 123 -256 7 1084 270 317 29 10 chr4 65444659 65444761 -90185359 + MTEa LTR MaLR 256 359 -20 7 1084 3559 82 2 2 chr4 65444879 65445345 -90184775 - L1_Mus1 LINE L1 -62 6505 6040 7 1084 338 47 0 0 chr4 65445342 65445385 -90184735 + L1_Mus1 LINE L1 5995 6037 -530 7 1084 3287 220 53 6 chr4 65445526 65446387 -90183733 - Lx4B LINE L1 0 7000 6083 7 1084 4601 152 9 11 chr4 65446359 65447166 -90182954 - L1_Mur2 LINE L1 -566 5311 4507 7 1084 726 199 21 0 chr4 65447165 65447306 -90182814 + L1_Mm LINE L1 5350 5493 -390 7 1084 630 0 0 0 chr4 65447444 65447514 -90182606 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1084 488 271 137 46 chr4 65447602 65447799 -90182321 + B3 SINE B2 1 215 -1 7 1084 4469 46 10 2 chr4 65447804 65448322 -90181798 - L1_Mus1 LINE L1 0 6567 6046 7 1084 814 143 8 0 chr4 65448322 65448455 -90181665 + L1_Mm LINE L1 5121 5254 -629 7 1084 338 287 34 96 chr4 65448662 65448870 -90181250 + RMER10A LTR ERVL 232 426 -16 7 1084 468 0 0 0 chr4 65450716 65450768 -90179352 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1084 543 335 80 44 chr4 65451578 65451853 -90178267 - B4A SINE B4 0 292 8 7 1084 1289 41 0 0 chr4 65451945 65452092 -90178028 + B1_Mm SINE Alu 1 147 0 7 1084 198 103 0 0 chr4 65452092 65452121 -90177999 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1084 513 68 0 0 chr4 65452441 65452515 -90177605 + (GA)n Simple_repeat Simple_repeat 2 75 0 7 1084 462 261 120 36 chr4 65452543 65452710 -90177410 + B4 SINE B4 106 286 -6 7 1084 198 91 0 0 chr4 65452733 65452766 -90177354 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1084 21 0 0 0 chr4 65454849 65454870 -90175250 + AT_rich Low_complexity Low_complexity 1 21 0 7 1084 949 186 12 123 chr4 65455180 65455432 -90174688 - URR1B DNA MER1_type -1 224 1 7 1084 3360 54 0 0 chr4 65456694 65457086 -90173034 - L1Md_T LINE L1 0 6582 6191 7 1084 857 292 54 50 chr4 65457312 65457799 -90172321 + MT2B LTR ERVL 1 577 -24 7 1084 330 87 0 0 chr4 65457894 65457940 -90172180 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1084 1603 149 36 68 chr4 65457942 65458251 -90171869 + ORR1A3 LTR MaLR 8 306 -20 7 1084 269 263 79 0 chr4 65459132 65459208 -90170912 - L2a LINE L2 -18 3408 3327 7 1084 203 171 0 0 chr4 65459440 65459475 -90170645 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1084 227 291 16 49 chr4 65460049 65460233 -90169887 + GA-rich Low_complexity Low_complexity 2 179 0 7 1084 342 340 112 34 chr4 65461173 65461441 -90168679 - MLT1C LTR MaLR -17 450 162 7 1084 650 326 95 28 chr4 65461467 65461824 -90168296 + MLT1A1 LTR MaLR 28 408 0 7 1084 222 233 100 0 chr4 65462036 65462096 -90168024 - L2c LINE L2 -1 3386 3321 7 1084 214 331 53 22 chr4 65462749 65462915 -90167205 + MIRc SINE MIR 84 258 -10 7 1084 409 198 77 33 chr4 65463124 65463253 -90166867 - ORR1D1 LTR MaLR -228 142 8 7 1084 1502 201 76 36 chr4 65463878 65464235 -90165885 + ORR1D1 LTR MaLR 1 371 -3 7 1084 26 74 0 0 chr4 65466394 65466448 -90163672 + AT_rich Low_complexity Low_complexity 1 54 0 7 1084 1151 284 42 38 chr4 65466616 65467088 -90163032 - Charlie4a DNA MER1_type -34 474 1 7 1084 361 184 10 20 chr4 65468860 65468960 -90161160 + CT-rich Low_complexity Low_complexity 2 100 0 7 1084 898 110 26 160 chr4 65468977 65469171 -90160949 - Lx3_Mus LINE L1 -203 6806 6639 7 1084 691 123 16 0 chr4 65469172 65469294 -90160826 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 7 1084 11587 95 19 15 chr4 65469406 65472128 -90157992 - Lx3_Mus LINE L1 -8 7001 4272 7 1084 1040 296 71 43 chr4 65472360 65472868 -90157252 - L1_Rod LINE L1 -11 5836 5315 7 1084 544 273 25 8 chr4 65473117 65473253 -90156867 + B1F SINE Alu 6 143 -6 7 1084 220 239 0 0 chr4 65473583 65473629 -90156491 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 7 1084 426 298 29 48 chr4 65473839 65474047 -90156073 + L1MA10 LINE L1 6041 6244 -90 7 1084 182 357 0 12 chr4 65474733 65474818 -90155302 - MIRc SINE MIR -7 261 178 7 1084 200 306 61 61 chr4 65475211 65475343 -90154777 + MIRb SINE MIR 106 237 -31 7 1084 253 347 50 36 chr4 65476374 65476676 -90153444 + L1M5 LINE L1 5440 5745 -379 7 1084 630 0 0 0 chr4 65477224 65477294 -90152826 + (GA)n Simple_repeat Simple_repeat 2 71 0 7 1084 684 281 92 92 chr4 65477902 65478317 -90151803 - MLT1C LTR MaLR -47 420 6 7 1084 200 204 0 0 chr4 65478396 65478440 -90151680 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 7 1084 261 57 0 0 chr4 65478864 65478899 -90151221 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1084 355 225 44 11 chr4 65478899 65478989 -90151131 - ID_B1 SINE B4 -11 213 121 7 1084 281 341 0 0 chr4 65479288 65479379 -90150741 + MIRb SINE MIR 170 260 -8 7 1084 219 303 30 0 chr4 65479400 65479488 -90150632 + MIRb SINE MIR 114 210 -58 7 1084 180 292 0 30 chr4 65479636 65479703 -90150417 - L2 LINE L2 -352 3067 3003 7 1084 279 333 26 0 chr4 65479730 65479847 -90150273 - L2 LINE L2 -518 2901 2782 7 1084 536 250 60 0 chr4 65480184 65480300 -90149820 + RSINE1 SINE B4 12 134 -31 7 1084 447 52 0 0 chr4 65480313 65480371 -90149749 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1084 549 0 0 0 chr4 65480371 65480431 -90149689 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1084 203 0 37 0 chr4 65480615 65480642 -90149478 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1084 252 0 0 0 chr4 65480763 65480791 -90149329 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1084 783 95 0 45 chr4 65480794 65480949 -90149171 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 7 1084 255 270 0 20 chr4 65481861 65481934 -90148186 + MIR SINE MIR 87 160 -108 7 1084 554 195 42 8 chr4 65482580 65482699 -90147421 - RMER1B Other Other -9 1057 935 7 1084 203 281 135 10 chr4 65482812 65482916 -90147204 - MIR3 SINE MIR -45 163 47 7 1084 625 335 25 10 chr4 65483051 65483253 -90146867 + Tigger5 DNA MER2_type 2 206 -2200 7 1084 273 298 24 12 chr4 65483300 65483385 -90146735 + Tigger5 DNA MER2_type 2311 2396 -10 7 1084 238 277 36 0 chr4 65483420 65483503 -90146617 + (CATA)n Simple_repeat Simple_repeat 4 89 0 7 1084 552 30 0 0 chr4 65483503 65483569 -90146551 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1084 287 193 0 0 chr4 65484022 65484079 -90146041 + MER53 DNA hAT 132 188 -5 7 1084 474 18 0 0 chr4 65484196 65484251 -90145869 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1084 36239 39 0 0 chr4 65484331 65489564 -90140556 + L1Md_T LINE L1 260 5589 -297 7 1084 9578 6 0 0 chr4 65489564 65490560 -90139560 + L1Md_T LINE L1 5590 6585 0 7 1084 204 328 104 48 chr4 65490837 65490962 -90139158 + MIRm SINE MIR 31 162 -114 7 1084 292 322 71 28 chr4 65491739 65491921 -90138199 - MIRc SINE MIR -41 227 38 7 1084 642 246 35 0 chr4 65492622 65492764 -90137356 + B1_Mur1 SINE Alu 2 148 -1 8 1084 755 270 196 30 chr4 65492986 65493390 -90136730 + Lx8 LINE L1 6995 7465 -8 8 1084 447 288 46 50 chr4 65493923 65494183 -90135937 + L1MC4a LINE L1 5671 5929 -1953 8 1084 746 288 30 76 chr4 65495686 65496054 -90134066 - Lx8 LINE L1 -2 7471 7121 8 1084 21 0 0 0 chr4 65496222 65496243 -90133877 + AT_rich Low_complexity Low_complexity 1 21 0 8 1084 181 102 40 20 chr4 65496624 65496674 -90133446 + T-rich Low_complexity Low_complexity 2 52 0 8 1084 487 261 58 29 chr4 65496824 65496962 -90133158 + B4A SINE B4 2 143 -149 8 1084 554 311 70 66 chr4 65497210 65497559 -90132561 - ORR1E LTR MaLR -5 374 2 8 1084 903 298 86 24 chr4 65497559 65497873 -90132247 - ORR1E-int LTR MaLR -52 1528 1194 8 1084 2371 300 98 23 chr4 65497858 65498831 -90131289 - ORR1E-int LTR MaLR -534 1046 1 8 1084 228 333 49 0 chr4 65498854 65498935 -90131185 - ORR1E LTR MaLR -8 371 287 8 1084 408 40 0 0 chr4 65499682 65499732 -90130388 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1084 306 0 0 0 chr4 65500319 65500353 -90129767 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1084 328 291 141 34 chr4 65501040 65501246 -90128874 - MER115 DNA Tip100 -3 690 463 2 1084 426 101 0 0 chr4 65501519 65501588 -90128532 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1084 640 164 24 0 chr4 65501599 65501764 -90128356 + (TCTG)n Simple_repeat Simple_repeat 2 170 0 4 1084 402 176 87 61 chr4 65501766 65501881 -90128239 - HAL1-3A_ME LINE L1 -824 2034 1917 5 1084 275 309 32 11 chr4 65503070 65503165 -90126955 - MIRm SINE MIR -120 156 60 6 1084 1456 45 28 0 chr4 65503404 65503583 -90126537 - B2_Mm1t SINE B2 -7 186 3 7 1084 203 298 33 58 chr4 65504623 65504744 -90125376 + MIRb SINE MIR 115 232 -36 8 1084 596 302 0 0 chr4 65505030 65505169 -90124951 - B1F SINE Alu -1 148 10 9 1084 359 332 213 57 chr4 65505429 65505660 -90124460 - L2 LINE L2 -370 3049 2811 1 1084 3120 92 18 5 chr4 65505660 65506105 -90124015 + L1_Mus3 LINE L1 6170 6620 -18 1 1084 359 332 213 57 chr4 65506105 65506715 -90123405 - L2 LINE L2 -609 2810 2077 1 1084 306 284 106 61 chr4 65506780 65507070 -90123050 - ORR1E LTR MaLR -14 365 18 1 1084 399 318 67 11 chr4 65507290 65507557 -90122563 + L1MD3 LINE L1 7700 7981 -14 1 1084 190 229 106 106 chr4 65507860 65507992 -90122128 + MIRb SINE MIR 131 262 -6 1 1084 382 410 75 0 chr4 65510307 65510495 -90119625 + MER21B LTR ERV1 55 256 -607 1 1084 431 313 98 49 chr4 65510584 65510829 -90119291 + MER21B LTR ERV1 411 667 -196 1 1084 181 331 127 73 chr4 65511190 65511340 -90118780 - MIRc SINE MIR -109 159 2 1 1084 403 261 18 0 chr4 65511930 65512041 -90118079 + MER5A1 DNA MER1_type 54 166 0 1 1084 266 410 0 0 chr4 65513574 65513652 -90116468 + 7SLRNA srpRNA srpRNA 9 86 -228 1 1084 1578 230 86 20 chr4 65513936 65514331 -90115789 - MTC LTR MaLR 0 421 1 1 1084 1658 179 35 0 chr4 65514359 65514649 -90115471 - MTC LTR MaLR -117 304 5 2 1084 571 261 21 14 chr4 65515427 65515567 -90114553 + B1F SINE Alu 7 147 -2 2 1084 7555 175 33 13 chr4 65515579 65517354 -90112766 - Lx5 LINE L1 -3 7047 5239 2 1084 3193 146 20 13 chr4 65517350 65517954 -90112166 + Lx5 LINE L1 4605 5212 -665 2 1084 546 54 0 0 chr4 65518616 65518690 -90111430 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1084 1846 187 44 22 chr4 65519012 65519182 -90110938 + ORR1C1 LTR MaLR 2 165 -213 2 1084 594 0 0 0 chr4 65519182 65519248 -90110872 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1084 1846 187 44 22 chr4 65519248 65519444 -90110676 + ORR1C1 LTR MaLR 166 376 -2 2 1084 191 143 0 125 chr4 65519705 65519753 -90110367 - L2a LINE L2 -6 3420 3379 2 1084 948 266 161 16 chr4 65519900 65520266 -90109854 - MTD LTR MaLR 0 419 1 2 1084 570 54 0 0 chr4 65520491 65520565 -90109555 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 2 1084 363 73 0 0 chr4 65520686 65520741 -90109379 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1084 233 215 0 15 chr4 65521237 65521303 -90108817 - Lx9 LINE L1 -2 7642 7578 3 1084 516 163 0 0 chr4 65521299 65521397 -90108723 + Lx9 LINE L1 7307 7404 -240 3 1084 301 349 115 40 chr4 65521652 65521852 -90108268 - MIRb SINE MIR -28 240 26 3 1084 3548 69 2 0 chr4 65522408 65522860 -90107260 - L1_Mus1 LINE L1 0 6567 6115 3 1084 4030 48 8 6 chr4 65525955 65526463 -90103657 + L1Md_F3 LINE L1 6062 6570 -14 3 1084 280 333 57 30 chr4 65528399 65528619 -90101501 + MLT1J LTR MaLR 28 299 -213 3 1084 581 322 7 13 chr4 65529341 65529495 -90100625 + B3A SINE B2 2 154 -44 3 1084 435 38 0 0 chr4 65529499 65529552 -90100568 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1084 362 381 83 29 chr4 65529723 65529999 -90100121 + MamRep38 DNA hAT 1 291 -4 3 1084 328 337 22 49 chr4 65530781 65530965 -90099155 + MIRb SINE MIR 26 204 -64 3 1084 330 338 30 15 chr4 65531693 65531828 -90098292 - MIR SINE MIR -114 148 12 4 1084 973 180 104 0 chr4 65533024 65533207 -90096913 - MTC LTR MaLR -49 372 171 4 1084 348 372 28 39 chr4 65533216 65533395 -90096725 + B4 SINE B4 112 288 -4 4 1084 435 92 0 0 chr4 65533406 65533471 -90096649 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1084 188 122 0 24 chr4 65533561 65533603 -90096517 + (TAAAAA)n Simple_repeat Simple_repeat 3 43 0 4 1084 250 308 38 13 chr4 65533861 65533940 -90096180 - MIRb SINE MIR -75 193 113 4 1084 5825 111 13 66 chr4 65534156 65535042 -90095078 - L1_Mus4 LINE L1 -6 6630 5799 4 1084 1397 60 33 0 chr4 65535042 65535226 -90094894 - B2_Mm2 SINE B2 -3 192 3 4 1084 5825 111 13 66 chr4 65535226 65535356 -90094764 - L1_Mus4 LINE L1 -838 5798 5668 4 1084 25 0 0 0 chr4 65535469 65535494 -90094626 + AT_rich Low_complexity Low_complexity 1 25 0 4 1085 21 36 0 0 chr4 65536137 65536165 -90093955 + AT_rich Low_complexity Low_complexity 1 28 0 4 1085 23 0 0 0 chr4 65536532 65536555 -90093565 + AT_rich Low_complexity Low_complexity 1 23 0 5 1085 245 311 132 0 chr4 65536828 65536934 -90093186 - PB1 SINE Alu -7 120 1 5 1085 368 345 44 63 chr4 65536953 65537111 -90093009 - RSINE1 SINE B4 0 165 11 5 1085 259 210 143 36 chr4 65537430 65537598 -90092522 - RMER17C LTR ERVK -179 231 46 5 1085 779 295 64 30 chr4 65537662 65537928 -90092192 - MLT2B4 LTR ERVL -281 275 1 5 1085 302 0 26 0 chr4 65538090 65538128 -90091992 + (CAA)n Simple_repeat Simple_repeat 2 40 0 5 1085 423 0 0 0 chr4 65538388 65538435 -90091685 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1085 602 326 86 19 chr4 65540149 65540462 -90089658 + Lx8 LINE L1 6919 7252 -221 5 1085 371 188 34 0 chr4 65540849 65540966 -90089154 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 1085 285 29 0 0 chr4 65540968 65541002 -90089118 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 5 1085 265 298 270 7 chr4 65541101 65541253 -90088867 - MIR SINE MIR -60 202 11 6 1085 4460 115 14 0 chr4 65541565 65542419 -90087701 - L1_Mus3 LINE L1 -653 5983 5111 6 1085 4332 99 25 11 chr4 65542419 65543055 -90087065 + L1_Mus3 LINE L1 5988 6632 -6 6 1085 371 21 21 0 chr4 65544720 65544768 -90085352 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1085 291 28 0 0 chr4 65545326 65545362 -90084758 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1085 209 30 61 0 chr4 65545955 65545988 -90084132 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1085 566 235 17 0 chr4 65545988 65546093 -90084027 - B1_Mur3 SINE Alu -9 140 34 6 1085 305 193 159 57 chr4 65546014 65546102 -90084018 - MT2B LTR ERVL -338 263 167 6 1085 600 304 65 15 chr4 65546448 65546785 -90083335 - L1MC4 LINE L1 -942 7100 6747 6 1085 451 82 14 14 chr4 65546869 65546943 -90083177 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1085 324 0 0 0 chr4 65547364 65547400 -90082720 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1085 192 158 0 0 chr4 65548978 65549016 -90081104 + (TAA)n Simple_repeat Simple_repeat 2 39 0 7 1085 226 285 180 19 chr4 65550085 65550246 -90079874 - MIRb SINE MIR -62 206 20 7 1085 261 333 84 14 chr4 65551006 65551149 -90078971 - MER5A1 DNA MER1_type -6 160 8 7 1085 589 340 41 5 chr4 65551166 65551361 -90078759 - MER58A DNA MER1_type -17 207 6 7 1085 279 0 0 0 chr4 65551726 65551757 -90078363 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1085 277 336 99 7 chr4 65552132 65552273 -90077847 + MER5A DNA MER1_type 6 159 -30 7 1085 4780 65 0 0 chr4 65552727 65553324 -90076796 + L1_Mus1 LINE L1 5971 6567 0 7 1085 216 0 0 0 chr4 65553581 65553605 -90076515 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1085 207 69 0 0 chr4 65553867 65553896 -90076224 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1085 190 328 35 0 chr4 65554187 65554245 -90075875 + MER5B DNA MER1_type 74 133 -45 7 1085 936 266 146 18 chr4 65554297 65554442 -90075678 + L1M4 LINE L1 4098 4244 -1902 8 1085 456 19 0 0 chr4 65554442 65554495 -90075625 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1085 936 266 146 18 chr4 65554495 65554903 -90075217 + L1M4 LINE L1 4245 4721 -1425 8 1085 235 336 0 25 chr4 65554941 65555060 -90075060 - L1MC4 LINE L1 -117 7925 7810 8 1085 186 43 0 0 chr4 65555171 65555194 -90074926 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1085 400 336 107 20 chr4 65555196 65555448 -90074672 - B4A SINE B4 -18 274 1 8 1085 1595 201 83 5 chr4 65555575 65555971 -90074149 - Lx3C LINE L1 -4 6972 6546 8 1085 266 264 68 11 chr4 65555983 65556071 -90074049 - L1MC4 LINE L1 -540 7502 7410 8 1085 919 76 0 22 chr4 65556266 65556400 -90073720 + L1_Mus2 LINE L1 6436 6566 0 8 1085 181 300 67 48 chr4 65557483 65557588 -90072532 + MIRm SINE MIR 146 252 -24 8 1085 233 185 0 85 chr4 65558045 65558061 -90072059 + A-rich Low_complexity Low_complexity 1 14 0 8 1085 1000 110 14 0 chr4 65558061 65558206 -90071914 + B1_Mus1 SINE Alu 1 147 -1 8 1085 233 185 0 85 chr4 65558206 65558248 -90071872 + A-rich Low_complexity Low_complexity 15 54 0 9 1085 184 191 106 0 chr4 65558253 65558300 -90071820 + MIRb SINE MIR 125 176 -92 9 1085 240 278 88 80 chr4 65558369 65558506 -90071614 - MER20 DNA MER1_type -50 169 32 9 1085 855 244 18 6 chr4 65558590 65558759 -90071361 + B3 SINE B2 37 207 -9 9 1085 781 284 53 65 chr4 65559369 65559844 -90070276 - L1MB3 LINE L1 -17 6166 5698 9 1085 312 327 122 12 chr4 65560071 65560235 -90069885 - MIRb SINE MIR -70 198 17 9 1085 1181 99 5 0 chr4 65561537 65561729 -90068391 - L1_Mm LINE L1 -3862 2021 1829 9 1085 351 0 0 0 chr4 65562479 65562518 -90067602 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1085 324 119 0 0 chr4 65562518 65562576 -90067544 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1085 363 44 0 0 chr4 65562608 65562653 -90067467 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1085 888 320 45 56 chr4 65564174 65564462 -90065658 + B4A SINE B4 6 290 -2 9 1085 33 25 0 0 chr4 65564702 65564742 -90065378 + AT_rich Low_complexity Low_complexity 1 40 0 1 1085 493 287 24 48 chr4 65565429 65565594 -90064526 + B4 SINE B4 128 288 -4 1 1085 302 326 91 35 chr4 65566063 65566206 -90063914 - MIRc SINE MIR -111 157 7 1 1085 335 287 56 32 chr4 65567054 65567180 -90062940 + MIRb SINE MIR 1 129 -139 1 1085 868 55 16 0 chr4 65567703 65567830 -90062290 + (TG)n Simple_repeat Simple_repeat 1 129 0 1 1085 184 167 0 0 chr4 65568144 65568174 -90061946 - MER5A DNA MER1_type -113 76 47 1 1085 329 377 27 20 chr4 65570069 65570218 -90059902 - L1M5 LINE L1 -565 5675 5526 1 1085 538 319 0 65 chr4 65571407 65571608 -90058512 - B3A SINE B2 -10 188 1 1 1085 265 392 8 15 chr4 65572038 65572170 -90057950 - L2c LINE L2 -10 3377 3247 1 1085 393 22 0 0 chr4 65572455 65572501 -90057619 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1085 185 357 10 48 chr4 65573149 65573252 -90056868 + MIRb SINE MIR 1 99 -169 1 1085 351 167 0 0 chr4 65574049 65574115 -90056005 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1085 26 30 0 0 chr4 65574136 65574169 -90055951 + AT_rich Low_complexity Low_complexity 1 33 0 1 1085 807 301 106 18 chr4 65574179 65574679 -90055441 - Lx8 LINE L1 -29 7444 6901 1 1085 234 185 15 30 chr4 65575189 65575256 -90054864 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1085 348 312 94 45 chr4 65575388 65575589 -90054531 - HAL1-3A_ME LINE L1 -708 2150 1940 1 1085 264 343 54 81 chr4 65576584 65576695 -90053425 - RSINE1 SINE B4 -36 129 22 1 1085 226 299 97 121 chr4 65577851 65578052 -90052068 + MIRb SINE MIR 22 214 -48 1 1085 200 234 15 15 chr4 65578907 65578972 -90051148 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 1 1085 389 323 22 62 chr4 65579088 65579266 -90050854 - MIR3 SINE MIR -5 203 33 1 1085 230 331 46 30 chr4 65579433 65579564 -90050556 + MamRep434 DNA TcMar 169 301 -125 1 1085 532 363 53 39 chr4 65580881 65581162 -90048958 - B4A SINE B4 -7 285 1 1 1085 213 341 12 0 chr4 65581373 65581455 -90048665 + MIR3 SINE MIR 96 178 -30 1 1085 1976 29 13 0 chr4 65581789 65582027 -90048093 - L1Md_A LINE L1 0 6582 6342 1 1085 281 185 56 0 chr4 65583025 65583079 -90047041 - U6 snRNA snRNA -47 60 4 1 1085 457 301 47 74 chr4 65583087 65583277 -90046843 - B3A SINE B2 -6 192 8 1 1085 888 28 0 0 chr4 65583787 65583894 -90046226 + (TC)n Simple_repeat Simple_repeat 2 108 0 1 1085 306 282 62 69 chr4 65584011 65584171 -90045949 - MIR SINE MIR -81 181 23 1 1085 299 371 0 0 chr4 65585074 65585190 -90044930 + MIRc SINE MIR 84 199 -69 1 1085 663 37 0 0 chr4 65585340 65585422 -90044698 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1085 654 141 0 0 chr4 65586041 65586183 -90043937 + (TC)n Simple_repeat Simple_repeat 1 142 0 1 1085 189 0 0 0 chr4 65586183 65586204 -90043916 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1085 186 270 26 39 chr4 65586321 65586398 -90043722 + MIRb SINE MIR 129 204 -64 1 1085 288 111 0 0 chr4 65586459 65586504 -90043616 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 1 1085 504 0 0 0 chr4 65587037 65587093 -90043027 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1085 319 414 58 14 chr4 65587376 65587599 -90042521 - MIRb SINE MIR -32 236 4 1 1085 354 333 17 0 chr4 65587890 65588007 -90042113 - Lx8 LINE L1 -1157 6316 6198 1 1085 349 269 140 23 chr4 65588076 65588247 -90041873 + Lx8 LINE L1 6416 6606 -867 1 1085 382 365 105 34 chr4 65588723 65589103 -90041017 + L2a LINE L2 2647 3053 -366 1 1085 272 222 49 0 chr4 65589217 65589298 -90040822 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1085 180 0 0 0 chr4 65589342 65589362 -90040758 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1085 239 254 101 65 chr4 65589367 65589506 -90040614 + L2a LINE L2 3283 3426 0 1 1085 180 0 0 0 chr4 65589592 65589612 -90040508 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1085 229 319 120 11 chr4 65589692 65589784 -90040336 - MER58A DNA MER1_type -120 104 3 1 1085 272 336 17 0 chr4 65589984 65590103 -90040017 + Charlie5 DNA MER1_type 1 121 -2503 1 1085 283 290 77 66 chr4 65590339 65590545 -90039575 - MIRb SINE MIR -40 228 21 1 1085 677 92 0 0 chr4 65592423 65592521 -90037599 - L1_Mm LINE L1 -1932 3951 3854 1 1085 5117 92 73 0 chr4 65592517 65593293 -90036827 - L1_Mus2 LINE L1 0 6566 5734 1 1085 837 95 9 0 chr4 65593297 65593413 -90036707 + MTA_Mm LTR MaLR 280 396 0 1 1085 8763 57 1 0 chr4 65593413 65594510 -90035610 + MTA_Mm-int LTR MaLR 1 1098 0 1 1085 3367 38 0 10 chr4 65594510 65594910 -90035210 + MTA_Mm LTR MaLR 1 396 0 1 1085 19808 128 22 12 chr4 65594912 65596743 -90033377 + L1_Mus3 LINE L1 2377 4208 -1675 1 1085 333 0 0 0 chr4 65596743 65596780 -90033340 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1085 19808 122 47 8 chr4 65596780 65599098 -90031022 + L1_Mus3 LINE L1 4209 6638 0 1 1085 195 186 0 0 chr4 65600058 65600101 -90030019 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1085 230 200 40 0 chr4 65600732 65600782 -90029338 - MIR3 SINE MIR -3 205 154 1 1085 245 357 95 0 chr4 65600782 65600908 -90029212 + MIR3 SINE MIR 53 190 -18 1 1085 1058 206 117 23 chr4 65601572 65601836 -90028284 + ORR1B1 LTR MaLR 41 329 -65 1 1085 4333 61 14 2 chr4 65602123 65602714 -90027406 + L1Md_F2 LINE L1 4988 5585 -298 1 1085 7425 61 13 5 chr4 65602714 65603681 -90026439 + L1Md_F2 LINE L1 5608 6582 0 1 1085 316 327 29 38 chr4 65603692 65603797 -90026323 - MER63D DNA AcHobo -671 390 287 1 1085 358 96 27 0 chr4 65604283 65604356 -90025764 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1 1085 1099 82 7 26 chr4 65604358 65604509 -90025611 - B1_Mus1 SINE Alu 0 148 1 1 1085 222 333 0 89 chr4 65604859 65604938 -90025182 - ID4_ SINE ID -5 78 7 1 1085 384 300 46 8 chr4 65607116 65607247 -90022873 - Lx8 LINE L1 -121 7352 7217 1 1085 4591 46 0 2 chr4 65607585 65608146 -90021974 - L1Md_F2 LINE L1 -1 6581 6022 1 1085 339 310 100 33 chr4 65608241 65608391 -90021729 + MER54B LTR ERVL 3 162 -739 1 1085 622 359 76 32 chr4 65608454 65608823 -90021297 + MER54B LTR ERVL 122 506 -287 1 1085 28 0 0 0 chr4 65608824 65608852 -90021268 + AT_rich Low_complexity Low_complexity 1 28 0 1 1085 1683 179 11 4 chr4 65608852 65609133 -90020987 + MTC LTR MaLR 81 363 -58 1 1085 421 318 149 50 chr4 65609172 65609394 -90020726 + MER54B LTR ERVL 527 770 -23 1 1085 670 309 111 57 chr4 65609430 65609872 -90020248 + L2 LINE L2 2410 2875 -544 1 1085 553 277 51 10 chr4 65610245 65610442 -90019678 + MER3 DNA MER1_type 1 205 -4 1 1085 295 299 122 12 chr4 65611508 65611698 -90018422 + MIR SINE MIR 18 227 -35 1 1085 291 300 0 12 chr4 65611882 65611963 -90018157 - ID4 SINE ID -2 81 2 1 1085 189 196 0 0 chr4 65612094 65612140 -90017980 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1085 329 287 122 8 chr4 65612148 65612271 -90017849 + B1F2 SINE Alu 4 140 -9 1 1085 314 91 18 0 chr4 65612460 65612515 -90017605 + (TTTTTG)n Simple_repeat Simple_repeat 3 58 0 1 1085 245 238 69 35 chr4 65613508 65613595 -90016525 - U17 snRNA snRNA -90 117 28 1 1085 235 350 92 10 chr4 65613773 65613871 -90016249 + MIRb SINE MIR 1 106 -162 1 1085 546 375 94 25 chr4 65613974 65614376 -90015744 - LTR16A LTR ERVL -19 432 3 1 1085 439 306 35 15 chr4 65614639 65614806 -90015314 + MLT1A1 LTR MaLR 192 403 -5 1 1085 191 342 0 95 chr4 65615240 65615366 -90014754 + L2c LINE L2 3273 3386 -1 1 1085 18947 45 0 1 chr4 65616054 65618509 -90011611 + L1Md_F3 LINE L1 3133 5586 -297 1 1085 7962 44 10 0 chr4 65618509 65619483 -90010637 + L1Md_F3 LINE L1 5587 6570 -14 1 1085 195 42 0 0 chr4 65619498 65619522 -90010598 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1085 213 94 0 0 chr4 65620178 65620210 -90009910 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1085 317 326 0 0 chr4 65621253 65621345 -90008775 + MLT1B LTR MaLR 1 92 -298 1 1085 6055 151 15 7 chr4 65621358 65622355 -90007765 - Lx4A LINE L1 -1 7057 6053 1 1085 1597 69 9 0 chr4 65622355 65622571 -90007549 + MTB LTR MaLR 1 218 -182 1 1085 231 36 0 0 chr4 65624116 65624144 -90005976 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1085 243 0 0 0 chr4 65624557 65624584 -90005536 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1085 1017 67 0 0 chr4 65624584 65624717 -90005403 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 1085 445 361 20 20 chr4 65624750 65624897 -90005223 - RSINE1 SINE B4 -17 148 2 1 1085 297 51 0 0 chr4 65625363 65625402 -90004718 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1085 234 0 0 0 chr4 65626087 65626113 -90004007 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1085 250 355 52 25 chr4 65626178 65626360 -90003760 + MIRb SINE MIR 6 192 -76 1 1085 994 282 78 43 chr4 65628038 65628389 -90001731 + MTE2b LTR MaLR 1 364 -6 1 1085 195 42 0 0 chr4 65629391 65629415 -90000705 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1085 360 152 0 0 chr4 65629519 65629585 -90000535 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1085 209 175 0 48 chr4 65629601 65629643 -90000477 + (TATG)n Simple_repeat Simple_repeat 4 43 0 1 1085 221 258 250 30 chr4 65630062 65630226 -89999894 + MIR SINE MIR 7 206 -56 1 1085 418 183 0 0 chr4 65630262 65630333 -89999787 + MIR SINE MIR 185 255 -7 1 1085 3151 96 0 20 chr4 65632098 65632545 -89997575 - L1_Mus3 LINE L1 -12 6626 6189 1 1085 346 150 17 0 chr4 65632545 65632605 -89997515 + L1_Mus3 LINE L1 6137 6197 -441 1 1085 298 303 0 0 chr4 65634427 65634493 -89995627 - ID4 SINE ID -4 79 14 1 1085 216 0 0 0 chr4 65634869 65634893 -89995227 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1085 188 370 0 52 chr4 65634904 65635001 -89995119 - MIRb SINE MIR -92 176 85 1 1085 212 293 80 0 chr4 65635174 65635249 -89994871 - MIRb SINE MIR -23 245 165 1 1085 324 0 0 0 chr4 65635378 65635414 -89994706 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1085 614 276 62 0 chr4 65635442 65635587 -89994533 - B3 SINE B2 -61 155 2 2 1085 636 56 0 0 chr4 65635587 65635676 -89994444 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1085 773 322 30 34 chr4 65635740 65636007 -89994113 - B4A SINE B4 -15 277 12 2 1085 278 354 43 81 chr4 65636696 65636930 -89993190 - MIRb SINE MIR -23 245 21 2 1085 1071 244 50 39 chr4 65637710 65638149 -89991971 - L1MA5 LINE L1 -3 6297 5854 2 1085 186 316 50 12 chr4 65638334 65638414 -89991706 - MIR SINE MIR -84 124 42 1 1085 23 68 0 0 chr4 65642189 65642233 -89987887 + AT_rich Low_complexity Low_complexity 1 44 0 2 1085 183 42 0 0 chr4 65642245 65642269 -89987851 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1085 602 271 23 35 chr4 65642638 65642810 -89987310 - MIRb SINE MIR -11 257 88 2 1085 28 29 0 0 chr4 65645190 65645225 -89984895 + AT_rich Low_complexity Low_complexity 1 35 0 2 1085 36156 32 0 0 chr4 65645225 65651761 -89978359 - L1Md_T LINE L1 0 6585 1 2 1085 306 0 0 0 chr4 65652016 65652050 -89978070 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1085 180 0 0 0 chr4 65653127 65653147 -89976973 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2 1085 26 30 0 0 chr4 65653725 65653758 -89976362 + AT_rich Low_complexity Low_complexity 1 33 0 2 1085 344 152 0 15 chr4 65653880 65653947 -89976173 + GA-rich Low_complexity Low_complexity 3 68 0 2 1085 939 299 117 16 chr4 65654608 65654985 -89975135 + MTD LTR MaLR 5 419 0 2 1085 220 330 36 30 chr4 65654995 65655106 -89975014 + MIR SINE MIR 140 251 -17 2 1085 696 328 42 42 chr4 65655184 65655448 -89974672 + B4 SINE B4 9 272 -20 2 1085 2111 128 6 3 chr4 65655957 65656287 -89973833 + Lx2 LINE L1 6667 6997 0 2 1085 483 267 17 8 chr4 65656711 65656828 -89973292 - MTD LTR MaLR 0 419 302 2 1085 593 191 36 0 chr4 65657268 65657378 -89972742 + ORR1D1 LTR MaLR 31 144 -230 2 1085 9818 20 0 0 chr4 65657390 65658577 -89971543 + L1Md_T LINE L1 4400 5586 -297 2 1085 8432 35 0 0 chr4 65658577 65659631 -89970489 + L1Md_T LINE L1 5587 6582 0 2 1085 1301 229 89 26 chr4 65660537 65660886 -89969234 + ORR1D1 LTR MaLR 2 372 -2 2 1085 687 127 0 0 chr4 65661910 65662028 -89968092 + (TCCA)n Simple_repeat Simple_repeat 4 121 0 2 1085 2859 63 48 3 chr4 65662558 65662937 -89967183 - MTA_Mm LTR MaLR 0 396 1 2 1085 208 305 110 34 chr4 65663116 65663134 -89966986 + MIR SINE MIR 76 94 -168 2 1085 426 293 90 42 chr4 65663134 65663323 -89966797 - B3A SINE B2 0 198 1 2 1085 212 305 110 34 chr4 65663323 65663450 -89966670 + MIRb SINE MIR 95 236 -32 2 1085 420 37 0 0 chr4 65663654 65663708 -89966412 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1085 477 316 32 13 chr4 65663720 65663874 -89966246 - B4 SINE B4 -2 290 134 2 1085 219 268 0 18 chr4 65664003 65664060 -89966060 + L2c LINE L2 3324 3379 -8 2 1085 229 353 90 13 chr4 65665035 65665190 -89964930 - MIR SINE MIR -7 255 89 2 1085 378 196 63 32 chr4 65665527 65665622 -89964498 - Lx9 LINE L1 -459 7185 7088 2 1085 1072 269 24 60 chr4 65665609 65666076 -89964044 + Lx9 LINE L1 7191 7640 -4 2 1085 2080 194 42 29 chr4 65666638 65667046 -89963074 - MTC LTR MaLR -8 413 1 2 1086 352 330 8 68 chr4 65667306 65667423 -89962697 - PB1D7 SINE Alu -9 111 2 2 1086 221 385 35 25 chr4 65668213 65668416 -89961704 - MIRc SINE MIR -32 236 26 2 1086 8320 136 11 7 chr4 65669045 65670425 -89959695 - Lx2 LINE L1 -2 6995 5611 2 1086 6577 84 29 16 chr4 65670423 65670590 -89959530 - L1VL4 LINE L1 -1598 1961 1794 2 1086 2805 52 38 19 chr4 65670590 65670961 -89959159 - L1_Mus1 LINE L1 0 6567 6190 2 1086 6577 136 33 30 chr4 65670961 65672561 -89957559 - L1VL4 LINE L1 -1766 1793 194 2 1086 704 86 38 0 chr4 65672968 65673098 -89957022 - L1_Mur1 LINE L1 -4455 1431 1295 2 1086 259 362 36 28 chr4 65674320 65674498 -89955622 - MIRb SINE MIR -28 234 52 2 1086 374 413 30 27 chr4 65676202 65676498 -89953622 + MLT1F2 LTR MaLR 95 391 -169 2 1086 1517 256 52 24 chr4 65676565 65677065 -89953055 + Lx8 LINE L1 6960 7473 0 2 1086 269 268 14 0 chr4 65677068 65677139 -89952981 + MLT1F2 LTR MaLR 488 559 -1 2 1086 436 355 6 26 chr4 65677569 65677725 -89952395 + MIRb SINE MIR 25 177 -91 2 1086 415 351 60 0 chr4 65680247 65680334 -89949786 + B1F1 SINE Alu 2 89 -60 2 1086 423 0 0 0 chr4 65680334 65680381 -89949739 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1086 415 351 60 0 chr4 65680381 65680427 -89949693 + B1F1 SINE Alu 90 141 -8 2 1086 286 333 73 8 chr4 65680735 65680859 -89949261 + MIRb SINE MIR 27 158 -110 2 1086 2255 152 106 5 chr4 65680873 65681296 -89948824 + RMER4A LTR ERVK 1 466 0 2 1086 512 357 49 67 chr4 65681886 65682171 -89947949 + B4 SINE B4 6 285 -7 2 1086 354 100 0 0 chr4 65682179 65682239 -89947881 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1086 4457 53 2 9 chr4 65682345 65682918 -89947202 + L1Md_F2 LINE L1 6014 6582 0 2 1086 2172 180 65 15 chr4 65683132 65683533 -89946587 + MTC LTR MaLR 1 421 0 2 1086 21 0 0 0 chr4 65683639 65683660 -89946460 + AT_rich Low_complexity Low_complexity 1 21 0 2 1086 461 317 40 18 chr4 65684844 65685069 -89945051 + Lx8 LINE L1 6895 7124 -349 2 1086 312 280 47 65 chr4 65685410 65685517 -89944603 + B4A SINE B4 1 105 -187 2 1086 367 316 31 62 chr4 65686288 65686450 -89943670 + Tigger16b DNA Tigger 168 324 -13 2 1086 23 33 0 0 chr4 65687102 65687132 -89942988 + AT_rich Low_complexity Low_complexity 1 30 0 2 1086 342 302 123 8 chr4 65687404 65687534 -89942586 + MIRc SINE MIR 2 146 -122 2 1086 551 288 88 34 chr4 65687554 65687759 -89942361 + B3A SINE B2 1 216 0 2 1086 279 0 0 0 chr4 65688284 65688315 -89941805 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1086 203 362 34 7 chr4 65689421 65689507 -89940613 + L2c LINE L2 3259 3349 -26 2 1086 248 91 23 0 chr4 65689519 65689563 -89940557 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 2 1086 1577 239 54 5 chr4 65691827 65692213 -89937907 - MTD LTR MaLR -12 407 3 2 1086 1767 41 28 0 chr4 65693250 65693521 -89936599 + L1_Mus1 LINE L1 6342 6567 0 2 1086 546 57 0 0 chr4 65694293 65694363 -89935757 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1086 621 0 0 0 chr4 65694364 65694433 -89935687 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 2 1086 226 195 0 0 chr4 65695130 65695171 -89934949 + L4 LINE RTE 1984 2024 -5 2 1086 1190 330 77 23 chr4 65696339 65696899 -89933221 + MLT1E1A LTR MaLR 57 596 -31 2 1086 193 344 101 31 chr4 65697248 65697407 -89932713 + L2 LINE L2 2730 2899 -520 2 1086 2124 56 4 0 chr4 65697672 65697940 -89932180 - L1_Mus1 LINE L1 0 6567 6299 2 1086 5127 94 10 1 chr4 65697938 65698653 -89931467 + L1_Mus1 LINE L1 5847 6567 0 2 1086 31 0 0 0 chr4 65698653 65698684 -89931436 + AT_rich Low_complexity Low_complexity 1 31 0 2 1086 1863 95 11 3 chr4 65698882 65699166 -89930954 - L1Md_F2 LINE L1 -514 6068 5784 2 1086 225 306 124 18 chr4 65699248 65699361 -89930759 - B4A SINE B4 -42 250 126 2 1086 7173 138 74 3 chr4 65699374 65701122 -89928998 + Lx4A LINE L1 5165 7058 0 2 1086 225 83 0 0 chr4 65701122 65701158 -89928962 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 2 1086 368 317 19 0 chr4 65701185 65701289 -89928831 - B4 SINE B4 -183 109 4 2 1086 22 0 0 0 chr4 65702294 65702316 -89927804 + AT_rich Low_complexity Low_complexity 1 22 0 2 1086 1262 236 37 58 chr4 65703560 65703797 -89926323 - ORR1D1 LTR MaLR 0 374 132 2 1086 1218 97 0 0 chr4 65703797 65703972 -89926148 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 2 1086 1262 236 37 58 chr4 65703972 65704116 -89926004 - ORR1D1 LTR MaLR -243 131 1 2 1086 619 329 20 40 chr4 65704658 65705009 -89925111 + Lx9 LINE L1 7074 7417 -227 2 1086 381 310 8 101 chr4 65705215 65705344 -89924776 - ID_B1 SINE B4 -75 149 33 2 1086 36856 6 0 0 chr4 65705483 65710832 -89919288 + L1Md_A LINE L1 236 5586 -297 2 1086 8971 5 1 0 chr4 65710832 65711827 -89918293 + L1Md_A LINE L1 5587 6582 0 2 1086 640 235 14 14 chr4 65713835 65713973 -89916147 + B3 SINE B2 73 210 -6 2 1086 395 392 24 29 chr4 65714973 65715183 -89914937 + MER58A DNA MER1_type 13 221 -3 2 1086 423 0 0 0 chr4 65715203 65715250 -89914870 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1086 328 350 74 25 chr4 65717354 65717556 -89912564 - MIR SINE MIR -43 219 8 2 1086 326 23 23 0 chr4 65718121 65718164 -89911956 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2 1086 339 323 6 29 chr4 65718167 65718339 -89911781 + GA-rich Low_complexity Low_complexity 4 171 0 2 1086 188 208 200 40 chr4 65719063 65719138 -89910982 - MIR SINE MIR -90 172 86 2 1086 477 307 124 12 chr4 65720390 65720631 -89909489 + MIRb SINE MIR 1 268 0 2 1086 202 421 45 37 chr4 65720740 65721009 -89909111 - L2c LINE L2 -54 3333 3063 2 1086 265 244 158 3 chr4 65721603 65721701 -89908419 - PB1D9 SINE Alu -9 108 3 2 1086 1040 289 98 35 chr4 65722318 65722687 -89907433 - MTD LTR MaLR -4 415 24 2 1086 1954 223 6 3 chr4 65722840 65723200 -89906920 + MTC LTR MaLR 1 361 -60 2 1086 252 325 0 2 chr4 65723203 65723286 -89906834 - MIRb SINE MIR -91 185 104 2 1086 517 139 0 38 chr4 65723410 65723515 -89906605 - L1Md_F3 LINE L1 -2 6582 6482 2 1086 307 252 0 16 chr4 65723526 65723611 -89906509 - ID4 SINE ID -56 96 14 2 1086 206 234 0 21 chr4 65723904 65723952 -89906168 + GA-rich Low_complexity Low_complexity 2 48 0 2 1086 181 341 50 64 chr4 65724409 65724550 -89905570 - MIRm SINE MIR -96 180 42 2 1086 302 0 26 0 chr4 65724729 65724767 -89905353 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1086 3456 89 0 10 chr4 65725132 65725618 -89904502 + L1Md_F2 LINE L1 6100 6580 -2 2 1086 36258 31 0 0 chr4 65725680 65732316 -89897804 - L1Md_T LINE L1 0 6585 1 2 1086 803 238 119 15 chr4 65732318 65732578 -89897542 + Lx6 LINE L1 7148 7434 -26 3 1086 744 270 18 36 chr4 65732671 65732890 -89897230 + B3 SINE B2 2 216 0 3 1086 321 338 64 0 chr4 65732898 65733102 -89897018 - MER33 DNA MER1_type -68 256 40 3 1086 661 309 92 29 chr4 65734320 65734592 -89895528 + L1MB5 LINE L1 5551 5860 -314 3 1086 1025 72 7 0 chr4 65734592 65734731 -89895389 + L1_Mus1 LINE L1 6425 6564 -3 3 1086 661 309 92 29 chr4 65734731 65735012 -89895108 + L1MB5 LINE L1 5861 6139 -35 3 1086 441 0 0 0 chr4 65736113 65736162 -89893958 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1086 1100 319 67 18 chr4 65736184 65736571 -89893549 - MTD LTR MaLR -13 406 1 3 1086 362 344 222 21 chr4 65736571 65736810 -89893310 - B4 SINE B4 -3 289 3 3 1086 280 342 0 0 chr4 65737341 65737420 -89892700 - ID4_ SINE ID -3 80 2 3 1086 235 355 0 11 chr4 65737465 65737556 -89892564 + PB1D10 SINE Alu 26 115 -2 3 1086 330 313 73 32 chr4 65738294 65738491 -89891629 - MIRb SINE MIR -21 247 50 3 1086 192 300 106 39 chr4 65738611 65738715 -89891405 - L3 LINE CR1 -292 4197 4087 3 1086 33730 36 0 0 chr4 65739290 65744749 -89885371 + L1Md_T LINE L1 34 5589 -297 3 1086 9010 7 0 0 chr4 65744749 65745745 -89884375 + L1Md_T LINE L1 5590 6585 0 3 1086 225 357 14 0 chr4 65745748 65745818 -89884302 - ID SINE ID -151 73 3 3 1086 227 143 20 20 chr4 65745949 65745999 -89884121 + A-rich Low_complexity Low_complexity 3 52 0 3 1086 326 23 23 0 chr4 65746003 65746046 -89884074 + (CAA)n Simple_repeat Simple_repeat 1 44 0 3 1086 440 214 50 30 chr4 65746095 65746196 -89883924 + B1_Mur3 SINE Alu 47 149 0 3 1086 219 128 0 49 chr4 65746196 65746237 -89883883 + A-rich Low_complexity Low_complexity 1 39 0 3 1086 400 326 74 33 chr4 65746799 65747043 -89883077 - L3 LINE CR1 -644 3845 3592 3 1086 693 211 16 0 chr4 65747230 65747358 -89882762 + B1_Mur1 SINE Alu 1 130 -19 3 1086 1361 11 17 17 chr4 65747380 65747560 -89882560 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1086 300 27 0 0 chr4 65748482 65748519 -89881601 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 3 1086 978 92 15 0 chr4 65748519 65748650 -89881470 - B1_Mus1 SINE Alu -14 134 2 3 1086 2643 122 19 2 chr4 65748691 65749101 -89881019 + L1_Mus3 LINE L1 6222 6638 0 3 1086 379 340 48 16 chr4 65749266 65749514 -89880606 + L1M5 LINE L1 5515 5770 -354 3 1086 1159 69 0 0 chr4 65749587 65749747 -89880373 - L1Md_A LINE L1 0 6582 6423 3 1086 318 301 160 42 chr4 65750119 65750331 -89879789 + L1ME1 LINE L1 416 652 -5484 3 1086 225 339 37 0 chr4 65750371 65750480 -89879640 + L1ME1 LINE L1 690 802 -5440 3 1086 22 0 0 0 chr4 65750629 65750651 -89879469 + AT_rich Low_complexity Low_complexity 1 22 0 3 1086 946 291 82 41 chr4 65750684 65751149 -89878971 + Lx8 LINE L1 6988 7471 -2 3 1086 1016 81 7 0 chr4 65751365 65751513 -89878607 + (GAGAA)n Simple_repeat Simple_repeat 1 149 0 3 1086 296 319 46 30 chr4 65751673 65752120 -89878000 + L1ME1 LINE L1 4156 4613 -1533 3 1086 331 314 118 58 chr4 65752144 65752526 -89877594 + L1MC LINE L1 4637 5041 -1105 3 1086 23 92 0 0 chr4 65752569 65752634 -89877486 + AT_rich Low_complexity Low_complexity 1 65 0 3 1086 381 329 91 17 chr4 65753168 65753219 -89876901 + L1ME1 LINE L1 5632 5682 -497 3 1086 513 0 0 0 chr4 65753219 65753276 -89876844 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1086 381 329 91 17 chr4 65753276 65753521 -89876599 + L1ME1 LINE L1 5683 5950 -229 3 1086 217 290 14 14 chr4 65753841 65753911 -89876209 - ID4_ SINE ID -2 81 12 3 1086 235 307 11 22 chr4 65754101 65754191 -89875929 - L3 LINE CR1 -2290 2199 2111 3 1086 346 304 158 49 chr4 65754361 65754627 -89875493 + MLT1G1 LTR MaLR 54 348 -231 3 1086 459 0 0 0 chr4 65754966 65755017 -89875103 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1086 522 0 0 0 chr4 65755018 65755076 -89875044 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1086 543 297 120 0 chr4 65755141 65755316 -89874804 + B3 SINE B2 5 200 -16 3 1086 306 50 0 0 chr4 65756350 65756390 -89873730 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1086 22 0 0 0 chr4 65756968 65756990 -89873130 + AT_rich Low_complexity Low_complexity 1 22 0 3 1086 21 0 0 0 chr4 65757178 65757199 -89872921 + AT_rich Low_complexity Low_complexity 1 21 0 3 1086 477 0 0 0 chr4 65757482 65757535 -89872585 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1086 522 0 0 0 chr4 65757535 65757592 -89872528 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1086 309 82 0 0 chr4 65759784 65759833 -89870287 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1086 236 296 28 14 chr4 65760119 65760191 -89869929 + MIR SINE MIR 1 73 -189 3 1086 444 290 16 8 chr4 65760191 65760316 -89869804 - MTE2b LTR MaLR 0 379 254 3 1086 1887 183 69 34 chr4 65760316 65760695 -89869425 - ORR1B1 LTR MaLR 0 394 3 3 1086 280 329 26 65 chr4 65760710 65760863 -89869257 - MTE2b LTR MaLR -179 200 54 3 1086 313 335 33 99 chr4 65760900 65760994 -89869126 + MIRb SINE MIR 76 159 -109 3 1086 1214 238 86 14 chr4 65760994 65761187 -89868933 - ORR1D1 LTR MaLR 0 374 160 3 1086 732 23 0 0 chr4 65761187 65761273 -89868847 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1086 1214 238 86 14 chr4 65761273 65761428 -89868692 - ORR1D1 LTR MaLR -215 159 2 3 1086 313 335 33 99 chr4 65761428 65761515 -89868605 + MIRb SINE MIR 160 245 -23 3 1086 290 301 28 28 chr4 65762458 65762564 -89867556 + MIRc SINE MIR 163 268 0 3 1086 219 139 0 0 chr4 65763057 65763093 -89867027 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1086 3928 84 4 25 chr4 65763945 65764503 -89865617 - L1Md_F2 LINE L1 -1 6581 6036 3 1086 235 250 0 55 chr4 65765776 65765831 -89864289 - 5S rRNA rRNA -32 89 38 3 1086 668 349 101 24 chr4 65766027 65766365 -89863755 - MTE2b LTR MaLR -15 364 1 3 1086 304 309 43 81 chr4 65766988 65767116 -89863004 - L1MEe LINE L1 -3756 1098 982 3 1086 2083 202 27 5 chr4 65767116 65767524 -89862596 + MTC LTR MaLR 3 419 -2 3 1086 304 309 43 81 chr4 65767524 65767606 -89862514 - L1MEe LINE L1 -3873 981 896 3 1086 765 284 86 30 chr4 65767965 65768234 -89861886 - ORR1E-int LTR MaLR -1273 307 24 3 1086 751 310 63 49 chr4 65768264 65768613 -89861507 - ORR1E LTR MaLR 0 359 6 3 1086 285 333 59 0 chr4 65769252 65769387 -89860733 + MLT1H LTR MaLR 407 549 0 3 1086 208 318 135 49 chr4 65770102 65770287 -89859833 - MIR SINE MIR -13 249 49 3 1086 211 286 16 16 chr4 65770405 65770469 -89859651 - L2b LINE L2 -8 3367 3304 3 1086 663 13 0 0 chr4 65770784 65770860 -89859260 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1086 336 328 108 39 chr4 65772097 65772332 -89857788 + MIRb SINE MIR 6 253 -15 3 1086 1206 302 64 14 chr4 65772715 65773181 -89856939 - Lx6 LINE L1 -78 7382 6535 3 1086 429 20 0 0 chr4 65773537 65773587 -89856533 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1086 304 312 0 12 chr4 65773640 65773721 -89856399 - RSINE1 SINE B4 -80 85 6 3 1086 347 56 19 0 chr4 65774218 65774272 -89855848 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 3 1086 1174 69 0 0 chr4 65774272 65774416 -89855704 - B1_Mus2 SINE Alu -3 144 1 3 1086 1837 53 0 0 chr4 65774425 65774650 -89855470 - L1_Mus1 LINE L1 -2 6565 6341 3 1086 2364 85 0 3 chr4 65774650 65774979 -89855141 + L1_Mus1 LINE L1 6037 6364 -203 3 1086 972 315 15 7 chr4 65775863 65776135 -89853985 - B4A SINE B4 -14 278 5 3 1086 27 81 0 0 chr4 65776903 65776965 -89853155 + AT_rich Low_complexity Low_complexity 1 62 0 3 1086 3546 88 24 8 chr4 65777014 65777518 -89852602 - L1_Mus4 LINE L1 -6 6630 6119 3 1086 238 352 45 30 chr4 65778270 65778402 -89851718 - MIRc SINE MIR -121 147 14 3 1086 1114 181 66 9 chr4 65778752 65778964 -89851156 + URR1B DNA MER1_type 2 225 0 3 1086 197 304 53 32 chr4 65779857 65779952 -89850168 - MIRb SINE MIR -82 186 90 3 1086 669 76 0 0 chr4 65780502 65780594 -89849526 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1086 207 289 0 0 chr4 65782161 65782206 -89847914 + polypurine Low_complexity Low_complexity 1 45 0 3 1086 429 316 33 60 chr4 65782684 65782866 -89847254 + B4A SINE B4 1 177 -115 3 1086 252 0 0 0 chr4 65783654 65783682 -89846438 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1086 209 135 18 55 chr4 65784528 65784583 -89845537 + GA-rich Low_complexity Low_complexity 5 57 0 3 1086 681 106 0 0 chr4 65784603 65784707 -89845413 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 1086 861 10 0 0 chr4 65784709 65784807 -89845313 + (GAA)n Simple_repeat Simple_repeat 1 98 0 3 1086 316 336 52 13 chr4 65785077 65785231 -89844889 - MIRb SINE MIR -23 245 86 3 1086 412 362 51 63 chr4 65785593 65785944 -89844176 - ORR1E LTR MaLR -2 357 11 3 1086 438 361 62 14 chr4 65786136 65786282 -89843838 - B4A SINE B4 -132 160 8 3 1086 469 309 78 24 chr4 65786400 65786606 -89843514 + MLT2C2 LTR ERVL 7 223 -241 3 1086 539 294 35 30 chr4 65787011 65787211 -89842909 + Charlie22a DNA MER1_type 75 275 -216 3 1086 184 326 0 0 chr4 65787402 65787448 -89842672 + L3 LINE CR1 4442 4487 -2 3 1086 849 207 194 13 chr4 65787534 65787843 -89842277 - Lx9 LINE L1 -1 7643 7279 3 1086 200 274 88 70 chr4 65787858 65787972 -89842148 - MIRb SINE MIR -74 194 79 3 1086 480 308 7 40 chr4 65790601 65790753 -89839367 + B3A SINE B2 8 154 -44 3 1086 244 348 78 26 chr4 65791415 65791530 -89838590 + MIR3 SINE MIR 3 123 -85 3 1086 1824 175 29 95 chr4 65791966 65792451 -89837669 - ORR1A3-int LTR MaLR -892 1071 619 3 1086 268 298 0 0 chr4 65793299 65793383 -89836737 + GA-rich Low_complexity Low_complexity 1 84 0 3 1086 243 341 135 30 chr4 65793391 65793621 -89836499 + L3 LINE CR1 3870 4123 -366 3 1086 232 431 52 0 chr4 65794081 65794255 -89835865 - MER20 DNA MER1_type -4 215 33 3 1086 21 36 0 0 chr4 65794518 65794546 -89835574 + AT_rich Low_complexity Low_complexity 1 28 0 3 1086 696 257 84 7 chr4 65794560 65794834 -89835286 + Lx7 LINE L1 5609 5903 -1793 3 1086 447 262 102 30 chr4 65794940 65795137 -89834983 - B3 SINE B2 -5 211 1 3 1086 351 0 0 0 chr4 65795261 65795300 -89834820 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1086 617 225 25 140 chr4 65796864 65797107 -89833013 - B3 SINE B2 -1 215 1 4 1086 26 50 0 0 chr4 65797346 65797386 -89832734 + AT_rich Low_complexity Low_complexity 1 40 0 4 1086 748 133 0 15 chr4 65797888 65798052 -89832068 - L1Md_F2 LINE L1 0 6582 6437 4 135 415 243 9 43 chr4 65798063 65798179 -89831941 + PB1D10 SINE Alu 1 112 -5 4 1087 1284 89 0 0 chr4 65798179 65798359 -89831761 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1087 4724 210 19 2 chr4 65799528 65800686 -89829434 + Lx4B LINE L1 5752 7027 -31 4 1087 441 0 0 0 chr4 65800693 65800742 -89829378 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 4 1087 638 296 69 20 chr4 65800900 65801103 -89829017 - B4A SINE B4 -43 249 37 4 1087 266 287 67 22 chr4 65801156 65801245 -89828875 - PB1 SINE Alu -23 104 12 4 1087 259 261 11 11 chr4 65801502 65801591 -89828529 + CT-rich Low_complexity Low_complexity 2 90 0 4 1087 342 45 0 0 chr4 65802303 65802347 -89827773 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1087 214 244 0 0 chr4 65802492 65802533 -89827587 + (ATG)n Simple_repeat Simple_repeat 3 43 0 4 1087 376 311 44 98 chr4 65802610 65802813 -89827307 + B3A SINE B2 1 192 -6 4 1087 243 133 0 0 chr4 65802999 65803044 -89827076 + (ATGGTG)n Simple_repeat Simple_repeat 6 50 0 4 1087 25 51 0 0 chr4 65803116 65803155 -89826965 + AT_rich Low_complexity Low_complexity 1 39 0 4 1087 4427 4 0 0 chr4 65803172 65803659 -89826461 - L1Md_A LINE L1 0 6582 6096 4 1087 7725 3 0 0 chr4 65803659 65804635 -89825485 + L1Md_A LINE L1 4982 5957 -625 4 1087 270 288 66 83 chr4 65805362 65805483 -89824637 + MT2B LTR ERVL 139 257 -344 4 1087 749 211 8 0 chr4 65805385 65805513 -89824607 + B1_Mur2 SINE Alu 6 134 -15 4 1087 249 33 0 0 chr4 65806868 65806898 -89823222 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 4 1087 186 237 0 0 chr4 65807050 65807088 -89823032 - MIRc SINE MIR -227 41 4 4 1087 305 307 97 75 chr4 65807453 65807777 -89822343 + ORR1E LTR MaLR 18 376 -3 4 1087 186 320 44 74 chr4 65808745 65808880 -89821240 + MIRb SINE MIR 99 229 -39 4 1087 33317 61 2 2 chr4 65809209 65814393 -89815727 + L1Md_F3 LINE L1 406 5585 -298 4 1087 7945 44 7 0 chr4 65814394 65815359 -89814761 + L1Md_F3 LINE L1 5587 6558 -26 4 1087 324 0 0 0 chr4 65815359 65815395 -89814725 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4 1087 393 22 0 0 chr4 65815480 65815526 -89814594 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1087 209 200 52 26 chr4 65816137 65816214 -89813906 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 4 1087 250 311 146 5 chr4 65816771 65816984 -89813136 - Lx8 LINE L1 -2 7471 7229 4 1087 326 331 22 49 chr4 65817291 65817475 -89812645 - Lx8 LINE L1 -148 7325 7147 4 1087 236 130 22 0 chr4 65817511 65817557 -89812563 + CT-rich Low_complexity Low_complexity 2 48 0 4 1087 791 281 0 71 chr4 65817723 65817949 -89812171 + B3 SINE B2 2 211 -5 4 1087 277 336 50 54 chr4 65818229 65818435 -89811685 + MIRb SINE MIR 57 264 -4 4 1087 380 354 125 6 chr4 65819648 65819975 -89810145 - L2a LINE L2 -45 3381 3016 4 1087 326 95 0 0 chr4 65820659 65820701 -89809419 - HAL1-3A_ME LINE L1 -842 2016 1975 4 1087 368 308 22 8 chr4 65821048 65821182 -89808938 + MER3 DNA MER1_type 64 199 -10 4 1087 194 267 133 0 chr4 65821788 65821848 -89808272 - L3 LINE CR1 -1604 2885 2818 4 1087 377 359 107 33 chr4 65823345 65824044 -89806076 + L1M4 LINE L1 4006 4756 -1390 4 1087 305 326 76 47 chr4 65824439 65824716 -89805404 + L1M4 LINE L1 5269 5553 -687 4 1087 781 274 20 0 chr4 65825022 65825223 -89804897 - B3 SINE B2 -7 209 5 4 1087 1046 51 7 0 chr4 65825367 65825504 -89804616 + (TC)n Simple_repeat Simple_repeat 1 138 0 4 1087 180 0 0 0 chr4 65826408 65826428 -89803692 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1087 1139 49 0 34 chr4 65826447 65826596 -89803524 - B1_Mus1 SINE Alu -4 144 1 4 1087 213 324 40 0 chr4 65826897 65826971 -89803149 + L2a LINE L2 3312 3388 -38 4 1087 432 0 0 0 chr4 65827036 65827084 -89803036 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1087 826 110 102 0 chr4 65827215 65827342 -89802778 + B1_Mus1 SINE Alu 1 140 -8 4 1087 889 101 0 43 chr4 65827342 65827529 -89802591 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1087 468 0 0 0 chr4 65827797 65827849 -89802271 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1087 219 218 0 0 chr4 65828196 65828251 -89801869 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1087 293 360 37 12 chr4 65829384 65829547 -89800573 - MIR SINE MIR -1 261 95 4 1087 1101 156 16 5 chr4 65829617 65829804 -89800316 + B2_Mm2 SINE B2 1 189 -6 4 1087 460 292 25 0 chr4 65829911 65830031 -89800089 - B3A SINE B2 -75 123 1 4 1087 198 0 0 0 chr4 65830985 65831007 -89799113 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1087 347 342 33 45 chr4 65831903 65832148 -89797972 - MIR SINE MIR -10 252 11 4 1087 229 218 18 0 chr4 65833357 65833412 -89796708 + GA-rich Low_complexity Low_complexity 2 57 0 4 1087 235 344 82 0 chr4 65834279 65834401 -89795719 + MIRb SINE MIR 35 166 -102 4 1087 663 13 0 0 chr4 65834403 65834479 -89795641 + (TTC)n Simple_repeat Simple_repeat 2 77 0 4 1087 217 295 31 21 chr4 65834649 65834746 -89795374 - L2a LINE L2 0 3426 3329 4 1087 381 131 0 0 chr4 65834872 65834933 -89795187 + (AGGGGG)n Simple_repeat Simple_repeat 2 62 0 4 1087 896 287 130 42 chr4 65834949 65835302 -89794818 - MTD LTR MaLR -34 385 2 4 1087 309 307 0 0 chr4 65836255 65836343 -89793777 + L2a LINE L2 3339 3426 0 4 1087 267 243 27 0 chr4 65836405 65836479 -89793641 + L1M5 LINE L1 5587 5662 -462 4 1087 219 296 19 0 chr4 65839737 65839791 -89790329 + MIRb SINE MIR 35 89 -179 4 1087 202 395 25 0 chr4 65840050 65840131 -89789989 - L2b LINE L2 -46 3329 3247 4 1087 1285 114 5 21 chr4 65840404 65840592 -89789528 - B2_Mm2 SINE B2 -9 186 2 4 1087 358 252 45 36 chr4 65841312 65841423 -89788697 + MIR SINE MIR 79 190 -72 4 1087 450 0 0 0 chr4 65842505 65842555 -89787565 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1087 275 298 0 12 chr4 65842697 65842782 -89787338 + CT-rich Low_complexity Low_complexity 1 84 0 4 1087 430 304 52 16 chr4 65843604 65843845 -89786275 - L1MA5 LINE L1 -22 6278 6031 4 1087 235 339 68 45 chr4 65845544 65845720 -89784400 + L3 LINE CR1 3932 4111 -378 4 1087 900 98 103 22 chr4 65846715 65846851 -89783269 + B1_Mus1 SINE Alu 2 148 0 4 1087 234 125 0 0 chr4 65846853 65846901 -89783219 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1087 243 0 0 0 chr4 65847280 65847307 -89782813 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 4 1087 183 42 0 0 chr4 65848608 65848632 -89781488 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1087 583 335 82 27 chr4 65849433 65849859 -89780261 + MLT1C LTR MaLR 11 502 -3 4 1087 186 301 0 76 chr4 65851067 65851146 -89778974 - MIR3 SINE MIR -51 157 85 4 1087 326 271 37 79 chr4 65851640 65851804 -89778316 + MER20 DNA MER1_type 3 159 -60 4 1087 414 57 0 0 chr4 65851811 65851864 -89778256 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1087 255 336 103 8 chr4 65853055 65853181 -89776939 - B1F2 SINE Alu -8 141 4 4 1087 3996 172 159 48 chr4 65853561 65853688 -89776432 - RLTR25B LTR ERVK -6 1022 875 4 1087 351 0 0 0 chr4 65853688 65853727 -89776393 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1087 297 0 0 0 chr4 65853727 65853759 -89776361 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1087 3996 172 159 48 chr4 65853759 65854542 -89775578 - RLTR25B LTR ERVK -154 874 11 4 1087 1920 80 0 74 chr4 65855214 65855499 -89774621 + L1Md_F2 LINE L1 6316 6579 -3 4 1087 314 231 75 32 chr4 65855514 65855608 -89774512 - B1F SINE Alu -6 143 46 4 1087 273 378 52 0 chr4 65856306 65856441 -89773679 - MIRb SINE MIR -87 181 40 4 1087 269 118 20 0 chr4 65857559 65857610 -89772510 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1087 353 339 60 38 chr4 65857668 65857852 -89772268 - B4A SINE B4 -64 228 41 4 1087 323 349 40 0 chr4 65858561 65858687 -89771433 - B4A SINE B4 -2 290 160 4 1087 7187 40 1 7 chr4 65858696 65859559 -89770561 - L1Md_F3 LINE L1 -14 6570 5713 4 1087 984 27 0 0 chr4 65859553 65859664 -89770456 + L1Md_F3 LINE L1 5611 5721 -863 4 1087 186 43 0 0 chr4 65859956 65859979 -89770141 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 1087 2538 66 26 20 chr4 65861148 65861489 -89768631 - L1Md_F2 LINE L1 -1 6581 6239 4 1087 307 363 77 14 chr4 65861883 65862090 -89768030 + MIRc SINE MIR 36 255 -13 4 1087 605 205 0 0 chr4 65862136 65862248 -89767872 + MTC LTR MaLR 1 112 -309 4 1087 1298 253 11 11 chr4 65862285 65862561 -89767559 - MTC LTR MaLR 0 421 146 4 1087 537 14 14 14 chr4 65862702 65862776 -89767344 + L1Md_F2 LINE L1 6507 6580 -2 4 1087 210 346 18 53 chr4 65863708 65863821 -89766299 - MIRm SINE MIR -127 149 41 4 1087 195 226 14 101 chr4 65865109 65865178 -89764942 + L2c LINE L2 3293 3355 -32 4 1087 250 318 110 4 chr4 65865256 65865399 -89764721 + MIR SINE MIR 104 262 -6 4 1087 229 345 17 34 chr4 65865575 65865692 -89764428 - PB1D10 SINE Alu -2 115 1 4 1087 209 250 0 0 chr4 65865856 65865900 -89764220 + (CTGTG)n Simple_repeat Simple_repeat 1 44 0 4 1087 555 56 0 0 chr4 65866897 65866968 -89763152 + (TTATA)n Simple_repeat Simple_repeat 4 74 0 4 1087 1163 293 28 94 chr4 65868639 65868798 -89761322 - Lx8 LINE L1 -2 7471 7337 4 1087 799 267 43 19 chr4 65868798 65869008 -89761112 - B3 SINE B2 0 216 2 4 1087 1163 293 28 94 chr4 65869008 65869454 -89760666 - Lx8 LINE L1 -137 7336 6906 4 1087 9285 116 16 16 chr4 65869470 65870190 -89759930 - Lx3A LINE L1 -1 6980 6265 4 1087 3087 91 10 8 chr4 65870190 65870589 -89759531 + MTB LTR MaLR 1 400 0 5 1087 9285 107 18 8 chr4 65870589 65872000 -89758120 - Lx3A LINE L1 -717 6264 4850 4 1087 1121 22 7 0 chr4 65872054 65872190 -89757930 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 1087 242 177 12 71 chr4 65872979 65873019 -89757101 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 5 1087 243 61 0 0 chr4 65873019 65873052 -89757068 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1087 242 177 12 71 chr4 65873052 65873096 -89757024 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 5 1087 245 283 16 16 chr4 65873168 65873229 -89756891 - MER102c DNA MER1_type -269 62 2 5 1087 245 324 82 34 chr4 65874335 65874482 -89755638 - MIRc SINE MIR -85 183 30 5 1087 369 324 54 32 chr4 65874555 65874740 -89755380 - MIRb SINE MIR -8 260 72 5 1087 202 102 0 71 chr4 65874902 65874944 -89755176 + T-rich Low_complexity Low_complexity 4 42 0 5 1087 401 300 56 134 chr4 65875219 65875450 -89754670 - B3 SINE B2 -1 215 3 5 1087 470 275 43 7 chr4 65875539 65875678 -89754442 - B1_Mur1 SINE Alu -2 147 4 5 1087 440 93 13 0 chr4 65875711 65875786 -89754334 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1087 730 311 50 15 chr4 65875786 65876047 -89754073 - B4 SINE B4 -22 270 1 5 1087 339 65 0 0 chr4 65877475 65877521 -89752599 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 5 1087 370 263 119 32 chr4 65877526 65877711 -89752409 + MIRc SINE MIR 54 254 -14 5 1087 364 311 32 24 chr4 65878158 65878283 -89751837 - B1F SINE Alu -1 148 23 5 1087 866 254 34 41 chr4 65878796 65879088 -89751032 - L1MA6 LINE L1 -24 6276 5987 5 1087 432 321 86 10 chr4 65879462 65879660 -89750460 + ID_B1 SINE B4 5 217 -7 5 1087 318 87 0 0 chr4 65879661 65879707 -89750413 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 5 1087 6441 40 0 0 chr4 65880152 65881165 -89748955 - L1Md_F2 LINE L1 -457 6125 5113 5 1087 3429 86 7 11 chr4 65881165 65881612 -89748508 + L1Md_F2 LINE L1 6128 6572 -10 5 1087 1038 179 49 40 chr4 65882595 65883092 -89747028 - RMER17C LTR ERVK -2 408 9 5 1087 600 14 0 0 chr4 65883602 65883671 -89746449 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1087 185 333 0 57 chr4 65883916 65883986 -89746134 - MIRm SINE MIR -188 88 23 5 1087 190 280 54 36 chr4 65887777 65887888 -89742232 + MIRb SINE MIR 98 210 -58 5 1087 2965 312 40 29 chr4 65888109 65888874 -89741246 + Lx8 LINE L1 6247 7028 -445 5 1087 185 0 0 39 chr4 65888874 65888900 -89741220 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1087 2618 315 38 27 chr4 65888900 65889186 -89740934 + Lx8 LINE L1 7029 7310 -163 5 1087 207 305 9 28 chr4 65889612 65889720 -89740400 + (CTATT)n Simple_repeat Simple_repeat 5 110 0 5 1087 592 275 14 0 chr4 65889871 65890013 -89740107 + RSINE1 SINE B4 4 147 -18 5 1087 1218 68 0 0 chr4 65890034 65890195 -89739925 + (CATA)n Simple_repeat Simple_repeat 2 162 0 5 1087 285 337 49 10 chr4 65891571 65891673 -89738447 + PB1D10 SINE Alu 1 106 -11 5 1087 294 327 27 9 chr4 65891971 65892082 -89738038 - MIRc SINE MIR -50 218 106 5 1087 291 330 31 0 chr4 65892240 65892337 -89737783 - Charlie9 DNA MER1_type -2640 117 18 5 1087 292 277 88 28 chr4 65892408 65892590 -89737530 + L3 LINE CR1 4210 4402 -87 5 1087 338 325 96 35 chr4 65892824 65893085 -89737035 + B4A SINE B4 1 277 -15 5 1087 387 137 0 0 chr4 65893116 65893189 -89736931 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1087 302 292 26 77 chr4 65893982 65894138 -89735982 - RSINE1 SINE B4 -10 155 8 5 1087 262 283 0 12 chr4 65894546 65894633 -89735487 + MIR SINE MIR 93 179 -89 5 1087 213 292 0 30 chr4 65894952 65895019 -89735101 + CT-rich Low_complexity Low_complexity 4 68 0 5 1087 489 162 0 26 chr4 65895656 65895770 -89734350 + GA-rich Low_complexity Low_complexity 3 113 0 5 1087 270 0 0 0 chr4 65895969 65895999 -89734121 + (TGAG)n Simple_repeat Simple_repeat 3 32 0 5 1087 197 323 69 30 chr4 65896035 65896166 -89733954 - L2a LINE L2 -13 3413 3278 5 1087 294 200 9 0 chr4 65897679 65897753 -89732367 + MLT1D LTR MaLR 426 486 -19 5 1087 540 310 75 52 chr4 65898157 65898463 -89731657 - L3 LINE CR1 -199 4290 3978 5 1087 191 328 68 17 chr4 65898715 65898774 -89731346 + MIRc SINE MIR 14 75 -193 5 1087 499 329 120 12 chr4 65899258 65899396 -89730724 + L1MD3 LINE L1 7256 7405 -590 5 1087 1422 78 5 15 chr4 65899396 65899591 -89730529 + B2_Mm1t SINE B2 1 193 0 5 1087 499 329 120 12 chr4 65899591 65899945 -89730175 + L1MD3 LINE L1 7406 7800 -195 5 1087 559 267 36 16 chr4 65899947 65900141 -89729979 + B3 SINE B2 2 199 -17 5 1087 2503 146 2 0 chr4 65900269 65900680 -89729440 - L1_Mus4 LINE L1 -55 5828 5417 5 1087 5292 107 23 10 chr4 65900680 65901473 -89728647 + L1_Mus4 LINE L1 5832 6634 -2 5 1087 432 0 0 0 chr4 65901530 65901578 -89728542 + (TAA)n Simple_repeat Simple_repeat 2 49 0 5 1087 987 307 17 3 chr4 65902090 65902378 -89727742 + B4A SINE B4 1 292 0 5 1087 262 339 102 0 chr4 65903058 65903185 -89726935 + MIRb SINE MIR 115 254 -14 5 1087 639 291 64 95 chr4 65904825 65905159 -89724961 - MTEa LTR MaLR -3 376 44 5 1087 215 31 0 30 chr4 65905159 65905192 -89724928 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1087 951 82 66 22 chr4 65905195 65905332 -89724788 - B1_Mus1 SINE Alu -4 144 2 5 1087 639 291 64 95 chr4 65905332 65905381 -89724739 - MTEa LTR MaLR -336 43 1 5 1087 315 322 0 11 chr4 65905387 65905475 -89724645 - MTEa-int LTR MaLR -7 1573 1487 5 1087 5416 44 1 0 chr4 65905475 65906129 -89723991 + L1Md_T LINE L1 5928 6582 0 5 1087 412 14 0 28 chr4 65906175 65906235 -89723885 + B1_Mm SINE Alu 59 113 -7 5 1087 396 0 0 0 chr4 65906238 65906282 -89723838 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 1087 1716 356 77 35 chr4 65906282 65907181 -89722939 - MTEa-int LTR MaLR -104 1476 540 5 1087 1869 273 33 6 chr4 65907210 65907697 -89722423 - Lx5 LINE L1 -9 7041 6542 5 1087 553 305 30 35 chr4 65907707 65907938 -89722182 - MTEa-int LTR MaLR -1079 501 272 5 1087 259 404 105 22 chr4 65908082 65908310 -89721810 - MT2A LTR ERVL -88 445 199 5 1087 1441 88 51 26 chr4 65908531 65908921 -89721199 - L1_Mus3 LINE L1 0 6638 6384 5 1087 447 35 0 0 chr4 65908921 65908979 -89721141 + L1_Mus3 LINE L1 6302 6359 -279 5 1087 257 317 49 130 chr4 65910852 65910898 -89719222 + ID_B1 SINE B4 45 214 -10 5 1087 384 227 50 144 chr4 65910898 65911037 -89719083 + B1F2 SINE Alu 14 139 -10 5 1087 534 143 0 0 chr4 65911055 65911174 -89718946 + (CATA)n Simple_repeat Simple_repeat 2 120 0 5 1087 326 357 121 57 chr4 65911713 65911995 -89718125 - MLT1A LTR MaLR -45 329 30 5 1087 191 247 46 115 chr4 65912160 65912247 -89717873 - L4 LINE RTE -1725 304 224 5 1087 24 0 0 0 chr4 65912262 65912286 -89717834 + AT_rich Low_complexity Low_complexity 1 24 0 5 1087 564 77 0 0 chr4 65912384 65912462 -89717658 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1087 956 269 14 14 chr4 65912932 65913211 -89716909 - Lx6 LINE L1 -14 7446 7168 5 1087 1369 232 39 30 chr4 65913212 65913549 -89716571 - ORR1D1 LTR MaLR -34 340 1 5 1087 306 0 0 0 chr4 65913680 65913714 -89716406 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1087 350 281 35 21 chr4 65913729 65913871 -89716249 - RSINE1 SINE B4 -17 148 5 5 1087 196 264 107 46 chr4 65914000 65914131 -89715989 + MIRb SINE MIR 80 218 -50 5 1087 325 284 14 0 chr4 65914378 65914452 -89715668 - ID4_ SINE ID 0 83 9 5 1087 394 274 34 34 chr4 65914473 65914590 -89715530 - PB1 SINE Alu 0 127 11 5 1087 269 286 0 139 chr4 65914595 65914717 -89715403 - PB1D7 SINE Alu 0 120 16 5 1087 1366 68 17 6 chr4 65915186 65915364 -89714756 - B2_Mm2 SINE B2 -14 181 2 5 1087 186 103 0 0 chr4 65915856 65915885 -89714235 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1087 426 20 0 0 chr4 65916479 65916530 -89713590 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1087 339 323 75 86 chr4 65916560 65916838 -89713282 - B4 SINE B4 -14 278 4 5 1087 359 337 96 34 chr4 65916987 65917374 -89712746 - L1MC4a LINE L1 -140 7855 7445 5 1087 306 0 0 0 chr4 65917445 65917479 -89712641 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 1087 650 265 30 11 chr4 65917933 65918200 -89711920 - L1MC4a LINE L1 -545 7337 7066 5 1087 233 338 42 28 chr4 65918401 65918544 -89711576 - MIRc SINE MIR -121 147 3 5 1087 351 0 0 0 chr4 65919667 65919706 -89710414 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1087 325 331 81 73 chr4 65919955 65920216 -89709904 + MLT1I LTR MaLR 74 336 -75 5 1087 1334 156 106 3 chr4 65921821 65922123 -89707997 + Lx9 LINE L1 7306 7638 -6 5 1087 220 235 0 19 chr4 65922460 65922512 -89707608 - MIRb SINE MIR -2 266 216 5 1087 321 373 55 26 chr4 65922512 65922759 -89707361 + MIRb SINE MIR 5 260 -2 5 1087 202 188 42 0 chr4 65923162 65923210 -89706910 + T-rich Low_complexity Low_complexity 2 51 0 5 1087 256 356 87 6 chr4 65923393 65923554 -89706566 - MIRb SINE MIR 0 268 95 5 1087 450 0 0 0 chr4 65924750 65924800 -89705320 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1087 603 322 29 32 chr4 65925850 65926129 -89703991 + B4A SINE B4 3 280 -12 5 1087 627 39 0 0 chr4 65926206 65926284 -89703836 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1087 279 0 0 0 chr4 65926685 65926716 -89703404 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1087 3193 41 14 2 chr4 65927797 65928214 -89701906 + L1Md_F2 LINE L1 5587 6008 -574 5 1087 700 333 50 35 chr4 65928471 65928754 -89701366 + B4A SINE B4 6 292 0 5 1087 195 190 0 0 chr4 65928791 65928849 -89701271 + CT-rich Low_complexity Low_complexity 2 59 0 5 1087 315 0 0 0 chr4 65928852 65928887 -89701233 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1088 262 301 155 13 chr4 65929843 65930069 -89700051 + L2a LINE L2 2630 2887 -532 5 1088 243 146 0 0 chr4 65931044 65931085 -89699035 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 5 1088 370 307 137 30 chr4 65931566 65931734 -89698386 + L2a LINE L2 3233 3418 -8 5 1088 213 196 0 0 chr4 65931751 65931797 -89698323 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1088 1762 137 7 3 chr4 65931872 65932166 -89697954 + Lx2 LINE L1 6702 6996 -1 6 1088 599 353 86 44 chr4 65933543 65933749 -89696371 - LTR33 LTR ERVL 0 515 312 6 1088 3192 42 31 0 chr4 65933749 65934133 -89695987 + MTA_Mm LTR MaLR 1 396 0 6 1088 599 353 86 44 chr4 65934133 65934264 -89695856 - LTR33 LTR ERVL -204 311 165 6 1088 203 351 30 45 chr4 65934398 65934532 -89695588 + L2c LINE L2 2728 2859 -560 6 1088 1647 158 44 44 chr4 65934656 65934973 -89695147 - Lx3C LINE L1 -3 6973 6657 6 1088 504 313 93 5 chr4 65935049 65935264 -89694856 - Tigger5 DNA MER2_type 0 2406 2173 6 1088 186 118 0 0 chr4 65936319 65936353 -89693767 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 1088 265 254 10 0 chr4 65936992 65937051 -89693069 + L2c LINE L2 3309 3384 -3 6 1088 730 152 11 0 chr4 65937725 65937902 -89692218 + CT-rich Low_complexity Low_complexity 2 180 0 6 1088 889 128 6 11 chr4 65937924 65938105 -89692015 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1088 203 303 219 24 chr4 65938315 65938484 -89691636 - MIRc SINE MIR -52 216 15 6 1088 304 326 46 33 chr4 65938774 65938926 -89691194 + MIRb SINE MIR 66 219 -49 6 1088 210 270 67 3 chr4 65939190 65939266 -89690854 - MIR SINE MIR -115 161 81 6 1088 501 32 0 0 chr4 65939594 65939657 -89690463 + (AGATG)n Simple_repeat Simple_repeat 5 67 0 6 1088 180 233 110 110 chr4 65942587 65942669 -89687451 + L4 LINE RTE 1035 1116 -913 6 1088 187 268 98 49 chr4 65944806 65944908 -89685212 - MIRb SINE MIR -39 229 123 6 1088 1177 180 37 0 chr4 65945037 65945254 -89684866 - URR1B DNA MER1_type 0 225 1 6 1088 644 172 245 0 chr4 65945644 65945848 -89684272 + Lx9 LINE L1 7389 7642 -2 6 1088 483 63 0 0 chr4 65946947 65947010 -89683110 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1088 639 268 85 0 chr4 65947270 65947494 -89682626 + MER2 DNA MER2_type 52 294 -51 6 1088 182 273 18 18 chr4 65947950 65948006 -89682114 + MIRb SINE MIR 203 258 -10 6 1088 380 315 0 35 chr4 65948488 65948603 -89681517 + L2a LINE L2 3311 3421 -5 6 1088 180 329 83 24 chr4 65949421 65949505 -89680615 + MIR SINE MIR 30 118 -90 6 1088 15985 3 0 0 chr4 65951303 65953863 -89676257 - L1Md_A LINE L1 0 6582 4023 6 1088 250 275 81 0 chr4 65954319 65954440 -89675680 + MIRb SINE MIR 15 158 -110 6 1088 231 189 28 42 chr4 65955170 65955242 -89674878 + GA-rich Low_complexity Low_complexity 4 74 0 6 1088 181 386 11 22 chr4 65956100 65956190 -89673930 - MIRb SINE MIR -116 152 64 6 1088 359 356 42 38 chr4 65956668 65956931 -89673189 + MIR SINE MIR 5 268 0 6 1088 423 0 0 0 chr4 65957018 65957065 -89673055 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1088 648 0 0 0 chr4 65958134 65958206 -89671914 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 6 1088 635 311 24 24 chr4 65958415 65958711 -89671409 + L1_Rod LINE L1 151 446 -6726 6 1088 1905 180 45 0 chr4 65958711 65959089 -89671031 - Lx LINE L1 -2 6652 6258 6 1088 225 0 0 0 chr4 65959508 65959533 -89670587 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 1088 188 250 95 48 chr4 65960231 65960294 -89669826 + MIR3 SINE MIR 109 174 -34 6 1088 196 319 0 0 chr4 65960292 65960339 -89669781 + L2a LINE L2 3362 3408 -18 6 1088 325 389 26 20 chr4 65960898 65961050 -89669070 - MER20 DNA MER1_type -27 192 40 6 1088 681 255 108 52 chr4 65961449 65961681 -89668439 + B4A SINE B4 9 253 -39 6 1088 465 19 0 0 chr4 65961698 65961752 -89668368 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1088 315 49 0 0 chr4 65962552 65962593 -89667527 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1088 198 322 84 39 chr4 65963391 65963546 -89666574 - L2c LINE L2 -168 3219 3058 6 1088 262 349 39 44 chr4 65964764 65965028 -89665092 - MER102a DNA MER1_type -85 245 1 6 1088 240 260 57 86 chr4 65965031 65965136 -89664984 - MIR3 SINE MIR -49 159 58 6 1088 253 309 0 29 chr4 65966196 65966266 -89663854 - MIRm SINE MIR 0 276 209 6 1088 198 256 0 0 chr4 65966290 65966333 -89663787 - MIR SINE MIR -6 256 214 6 1088 337 263 129 20 chr4 65968139 65968240 -89661880 - PB1 SINE Alu -1 126 15 6 1088 207 236 71 18 chr4 65968440 65968496 -89661624 - MIRb SINE MIR 0 268 210 6 1088 187 302 22 55 chr4 65968502 65968593 -89661527 - MIRb SINE MIR -1 267 180 6 1088 363 280 19 9 chr4 65968598 65968706 -89661414 + MLT2B2 LTR ERVL 1 109 -406 6 1088 203 351 45 45 chr4 65969111 65969245 -89660875 - MIR3 SINE MIR -68 140 7 6 1088 4120 24 0 0 chr4 65970361 65970858 -89659262 - L1Md_F2 LINE L1 -456 6126 5630 6 1088 3560 46 28 26 chr4 65970858 65971326 -89658794 + L1Md_F2 LINE L1 6113 6581 -1 6 1088 1011 279 70 4 chr4 65972268 65972541 -89657579 + MTE2b LTR MaLR 1 291 -88 6 1088 772 293 78 0 chr4 65972687 65972878 -89657242 + B3 SINE B2 6 211 -5 6 1088 407 253 293 25 chr4 65972881 65973161 -89656959 + L1MB8 LINE L1 5816 6170 -8 6 1088 468 35 0 0 chr4 65973197 65973255 -89656865 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1088 257 286 0 93 chr4 65973331 65973457 -89656663 - MIRb SINE MIR -62 206 96 6 1088 368 266 165 80 chr4 65973975 65974175 -89655945 - MER58A DNA MER1_type 0 224 8 6 1088 1222 92 40 0 chr4 65974696 65974870 -89655250 - B2_Mm2 SINE B2 -14 181 1 6 1088 444 19 0 0 chr4 65975474 65975527 -89654593 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1088 22 35 0 0 chr4 65976908 65976937 -89653183 + AT_rich Low_complexity Low_complexity 1 29 0 6 1088 24 67 0 0 chr4 65978060 65978105 -89652015 + AT_rich Low_complexity Low_complexity 1 45 0 6 1088 180 267 0 0 chr4 65979301 65979346 -89650774 + MIR SINE MIR 115 159 -103 6 1088 984 290 25 65 chr4 65981366 65981643 -89648477 - B4 SINE B4 0 292 27 6 1088 285 358 44 44 chr4 65982142 65982370 -89647750 - MLT1D LTR MaLR -7 498 271 6 1088 312 304 16 8 chr4 65983318 65983444 -89646676 + GA-rich Low_complexity Low_complexity 2 128 0 6 1088 494 70 0 14 chr4 65984259 65984331 -89645789 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 6 1088 196 298 96 0 chr4 65984387 65984491 -89645629 - L2a LINE L2 -4 3422 3309 6 1088 428 261 87 111 chr4 65984553 65984760 -89645360 - MIR SINE MIR -33 229 28 6 1088 816 319 34 30 chr4 65985250 65985515 -89644605 - B4A SINE B4 -21 271 6 6 1088 327 331 15 23 chr4 65986143 65986273 -89643847 + MTEa LTR MaLR 251 379 0 6 1088 204 296 47 75 chr4 65986797 65986903 -89643217 - MIR3 SINE MIR -94 114 12 6 1088 296 281 161 15 chr4 65987267 65987397 -89642723 - MIR SINE MIR -36 226 78 6 1088 29 0 0 25 chr4 65987512 65987525 -89642595 + AT_rich Low_complexity Low_complexity 1 13 0 6 1088 4176 75 2 0 chr4 65987525 65988061 -89642059 + L1_Mus1 LINE L1 6031 6567 0 6 1088 29 0 0 25 chr4 65988061 65988087 -89642033 + AT_rich Low_complexity Low_complexity 1 26 0 6 1088 451 309 76 49 chr4 65989927 65990442 -89639678 + L1MD3 LINE L1 7327 7861 -134 6 1088 2549 158 55 8 chr4 65990442 65990914 -89639206 - Lx2 LINE L1 -4 6993 6500 6 1088 451 309 76 49 chr4 65990914 65990987 -89639133 + L1MD3 LINE L1 7862 7931 -64 6 1088 225 266 31 0 chr4 65991002 65991066 -89639054 - MLT1B LTR MaLR -9 399 334 6 1088 287 264 161 58 chr4 65991078 65991283 -89638837 - MLT1B LTR MaLR -64 326 101 6 1088 236 77 0 25 chr4 65991433 65991473 -89638647 + B1_Mm SINE Alu 109 147 0 6 1088 225 0 0 0 chr4 65991473 65991498 -89638622 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 6 1088 648 183 7 34 chr4 65992064 65992211 -89637909 - Lx4A LINE L1 -3 7055 6913 6 1088 680 329 60 63 chr4 65993805 65994107 -89636013 + Tigger7 DNA MER2_type 29 329 -2162 6 1088 356 251 66 38 chr4 65994352 65994587 -89635533 + L1ME2 LINE L1 5729 5972 -202 6 1088 549 293 73 5 chr4 65994765 65994957 -89635163 - Lx8 LINE L1 -149 7324 7120 6 1088 320 276 26 19 chr4 65994964 65995098 -89635022 + L1ME2 LINE L1 6016 6148 -36 6 1088 291 282 134 18 chr4 65995214 65995326 -89634794 + MER3 DNA MER1_type 24 148 -61 6 1088 639 168 0 0 chr4 65995394 65995513 -89634607 + GA-rich Low_complexity Low_complexity 2 120 0 6 1088 893 249 83 57 chr4 65995719 65996179 -89633941 + L1MC1 LINE L1 5857 6328 -5 6 1088 342 0 0 0 chr4 65996279 65996317 -89633803 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1088 211 292 0 71 chr4 65997106 65997176 -89632944 + L2a LINE L2 3357 3421 -5 6 1088 207 100 0 0 chr4 65998750 65998780 -89631340 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 1088 496 339 22 6 chr4 65998797 65998975 -89631145 - B3A SINE B2 -16 182 2 6 1088 438 283 76 78 chr4 66000299 66000654 -89629466 - MTC-int LTR MaLR -13 1245 837 1 1088 504 0 0 0 chr4 66001705 66001761 -89628359 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1088 1203 215 9 0 chr4 66002045 66002268 -89627852 - URR1A DNA MER1_type -1 225 1 3 1088 606 179 0 0 chr4 66003327 66003495 -89626625 + CT-rich Low_complexity Low_complexity 1 168 0 4 1088 573 42 0 0 chr4 66003495 66003567 -89626553 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1088 327 357 54 0 chr4 66003574 66003686 -89626434 - B3A SINE B2 -46 152 35 6 1088 293 279 116 9 chr4 66003714 66003826 -89626294 - B1_Mus1 SINE Alu -6 142 19 7 1088 435 68 0 0 chr4 66003939 66003998 -89626122 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1088 203 307 91 0 chr4 66004314 66004402 -89625718 - MIRb SINE MIR -62 206 111 9 1088 360 0 0 0 chr4 66005095 66005135 -89624985 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1088 274 317 58 0 chr4 66005167 66005271 -89624849 - Tigger5 DNA MER2_type -6 2400 2291 1 1088 289 396 0 0 chr4 66005285 66005376 -89624744 - Tigger5 DNA MER2_type -2194 212 122 1 1088 180 338 28 0 chr4 66005475 66005546 -89624574 - MIR3 SINE MIR -51 157 85 1 1088 280 256 85 9 chr4 66006089 66006202 -89623918 + B1F SINE Alu 1 117 -32 1 1088 424 289 96 43 chr4 66006251 66006439 -89623681 + B3A SINE B2 1 198 0 1 1088 653 343 44 49 chr4 66006466 66006831 -89623289 - MLT1A0 LTR MaLR 0 365 3 1 1088 384 77 0 0 chr4 66007193 66007245 -89622875 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1088 327 273 0 48 chr4 66007622 66007726 -89622394 + L2c LINE L2 3287 3385 -2 1 1088 222 41 78 39 chr4 66009642 66009693 -89620427 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1088 612 106 0 0 chr4 66009694 66009788 -89620332 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1088 588 362 51 29 chr4 66009824 66010100 -89620020 - B4A SINE B4 -6 286 5 2 1088 550 274 176 16 chr4 66010136 66010318 -89619802 + B3 SINE B2 5 215 -1 2 1088 236 277 0 0 chr4 66011009 66011074 -89619046 - MIRc SINE MIR -1 267 203 2 1088 267 314 59 95 chr4 66011972 66012141 -89617979 - MIRb SINE MIR -54 214 52 2 1088 186 205 110 88 chr4 66012169 66012260 -89617860 - MIR SINE MIR -62 146 54 2 1088 857 277 5 23 chr4 66012571 66012789 -89617331 + B3 SINE B2 3 216 0 2 1088 293 255 119 65 chr4 66012817 66012985 -89617135 + MIR SINE MIR 38 214 -48 2 1088 341 296 32 1 chr4 66013705 66013811 -89616309 + MIRb SINE MIR 56 163 -105 2 1088 987 294 101 22 chr4 66013812 66014170 -89615950 - MTD LTR MaLR -14 405 20 2 1088 189 195 0 0 chr4 66014538 66014579 -89615541 + MIRm SINE MIR 104 144 -132 2 1088 185 394 51 41 chr4 66015905 66016003 -89614117 + L3 LINE CR1 2952 3050 -1439 2 1088 36202 36 1 0 chr4 66016058 66022139 -89607981 + L1Md_T LINE L1 1 5589 -297 3 1088 9574 6 0 0 chr4 66022139 66023158 -89606962 + L1Md_T LINE L1 5590 6585 0 3 1088 198 103 0 0 chr4 66024413 66024442 -89605678 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1088 870 144 182 0 chr4 66024476 66024663 -89605457 - Lx2B LINE L1 -6 6994 6774 3 1088 829 314 123 20 chr4 66024987 66025433 -89604687 - MLT1D LTR MaLR -4 501 10 3 1088 722 281 25 15 chr4 66025589 66025788 -89604332 + B3 SINE B2 13 213 -3 3 1088 393 81 0 0 chr4 66026034 66026096 -89604024 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1088 183 340 38 85 chr4 66027924 66028030 -89602090 + MIR SINE MIR 52 152 -56 3 1088 200 35 35 0 chr4 66029252 66029281 -89600839 + (CCCCCA)n Simple_repeat Simple_repeat 2 31 0 3 1088 227 354 0 0 chr4 66029496 66029561 -89600559 + ID4_ SINE ID 2 66 -17 3 1088 1088 287 43 57 chr4 66029589 66029921 -89600199 + L1MB8 LINE L1 5434 5765 -413 3 1088 1099 43 7 21 chr4 66029921 66030065 -89600055 + L1Md_F3 LINE L1 6428 6569 -15 4 1088 1088 287 43 57 chr4 66030065 66030242 -89599878 + L1MB8 LINE L1 5766 5936 -242 3 1088 677 298 11 27 chr4 66030242 66030428 -89599692 + B3A SINE B2 1 183 -15 4 1088 22 24 0 45 chr4 66030440 66030462 -89599658 + AT_rich Low_complexity Low_complexity 1 21 0 4 1088 1174 95 0 0 chr4 66030462 66030609 -89599511 - B1_Mus1 SINE Alu 0 148 2 4 1088 22 24 0 45 chr4 66030609 66030630 -89599490 + AT_rich Low_complexity Low_complexity 1 21 0 4 1088 180 390 122 26 chr4 66030889 66031118 -89599002 - L2 LINE L2 -348 3071 2821 4 1088 189 327 112 24 chr4 66031374 66031543 -89598577 - MIRb SINE MIR -68 200 17 4 1088 987 322 27 0 chr4 66031905 66032234 -89597886 - MER58B DNA MER1_type -1 340 3 4 1088 1227 82 0 0 chr4 66032268 66032415 -89597705 + B1_Mus1 SINE Alu 2 148 0 4 1088 967 226 34 5 chr4 66032453 66032658 -89597462 + B3 SINE B2 1 211 -5 4 1088 1610 192 27 66 chr4 66033639 66033974 -89596146 - ORR1C2 LTR MaLR 0 384 63 5 1088 5093 220 130 33 chr4 66033998 66035371 -89594749 - ORR1C2-int LTR MaLR 0 1509 3 5 1088 1490 194 10 261 chr4 66035375 66035884 -89594236 - ORR1C2 LTR MaLR -3 381 1 5 1088 717 102 0 0 chr4 66036113 66036221 -89593899 + (TG)n Simple_repeat Simple_repeat 2 109 0 5 1088 250 301 118 56 chr4 66036224 66036254 -89593866 - ID_B1 SINE B4 -71 153 1 5 1088 565 211 61 0 chr4 66036254 66036368 -89593752 - B3A SINE B2 -77 121 1 5 1088 22 0 0 0 chr4 66036962 66036984 -89593136 + AT_rich Low_complexity Low_complexity 1 22 0 5 1088 333 0 0 0 chr4 66037002 66037039 -89593081 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5 1088 423 0 0 0 chr4 66037039 66037086 -89593034 + (GAA)n Simple_repeat Simple_repeat 2 48 0 5 1088 222 360 0 34 chr4 66038653 66038742 -89591378 + L2b LINE L2 3285 3370 -5 5 1088 257 387 0 0 chr4 66039117 66039210 -89590910 + B4A SINE B4 2 94 -198 5 1088 450 0 0 0 chr4 66039210 66039260 -89590860 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1088 997 97 0 0 chr4 66040773 66040907 -89589213 - L1_Mus2 LINE L1 0 6566 6433 6 1088 366 264 11 44 chr4 66041596 66041687 -89588433 - B4 SINE B4 -204 88 1 6 1088 705 110 0 0 chr4 66042300 66042409 -89587711 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1088 323 200 235 0 chr4 66042410 66042495 -89587625 - B1_Mur1 SINE Alu -43 106 2 6 1088 197 146 21 0 chr4 66043098 66043146 -89586974 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 6 1088 273 159 0 0 chr4 66043356 66043419 -89586701 + CT-rich Low_complexity Low_complexity 1 63 0 6 1088 267 278 54 32 chr4 66043939 66044032 -89586088 - MER3 DNA MER1_type -7 202 108 6 1088 2807 112 32 11 chr4 66044566 66045007 -89585113 + Lx LINE L1 6183 6632 -22 6 1088 206 62 31 0 chr4 66045436 66045468 -89584652 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1088 513 0 0 0 chr4 66045468 66045525 -89584595 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1088 1236 287 86 38 chr4 66046358 66046937 -89583183 + Tigger13a DNA MER2_type 158 764 -7 7 1088 189 274 0 0 chr4 66047219 66047292 -89582828 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1088 372 319 103 0 chr4 66047444 66047560 -89582560 + MTEb LTR MaLR 236 363 -16 7 1088 185 163 0 44 chr4 66047600 66047645 -89582475 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 7 1088 236 286 71 0 chr4 66048140 66048224 -89581896 - Charlie15a DNA MER1_type -5 219 130 7 1088 22 56 0 0 chr4 66048581 66048617 -89581503 + AT_rich Low_complexity Low_complexity 1 36 0 7 1088 1763 255 16 33 chr4 66048737 66049163 -89580957 - MTD LTR MaLR 0 419 1 7 1088 1270 41 7 0 chr4 66049316 66049462 -89580658 + B1_Mus2 SINE Alu 1 147 0 7 1088 240 175 0 0 chr4 66049462 66049525 -89580595 + A-rich Low_complexity Low_complexity 1 63 0 7 1088 21 0 0 0 chr4 66049678 66049699 -89580421 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 280 293 13 0 chr4 66049846 66049921 -89580199 - RMER15 LTR ERVL -105 470 395 8 1088 1281 76 122 0 chr4 66049921 66050093 -89580027 - B2_Mm2 SINE B2 -2 193 1 8 1088 819 312 89 35 chr4 66050094 66050442 -89579678 - Lx8 LINE L1 -203 7270 6904 8 1088 2204 208 9 19 chr4 66050716 66051138 -89578982 + MTC LTR MaLR 1 418 -3 8 1088 187 350 103 24 chr4 66052662 66052788 -89577332 - L2 LINE L2 -498 2921 2786 8 1088 583 284 26 0 chr4 66052794 66052949 -89577171 - MER58B DNA MER1_type 0 341 183 8 1088 276 53 0 0 chr4 66052954 66052992 -89577128 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1088 351 0 0 0 chr4 66053990 66054029 -89576091 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1088 372 43 0 0 chr4 66055786 66055832 -89574288 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1088 270 0 0 0 chr4 66055833 66055863 -89574257 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1088 507 17 0 0 chr4 66055863 66055922 -89574198 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1088 310 356 145 8 chr4 66057010 66057259 -89572861 + L2 LINE L2 2674 2956 -463 9 1088 200 226 0 7 chr4 66057774 66057838 -89572282 - L2a LINE L2 -224 3163 3101 9 1088 2734 66 58 3 chr4 66058832 66059196 -89570924 + L1_Mus1 LINE L1 6184 6567 0 9 1088 183 42 0 0 chr4 66059872 66059896 -89570224 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1089 195 300 86 12 chr4 66061142 66061223 -89568897 - MIR3 SINE MIR -36 172 86 9 1089 187 290 125 31 chr4 66061726 66061854 -89568266 + MIR SINE MIR 123 262 0 9 1089 486 0 0 0 chr4 66063382 66063436 -89566684 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1089 189 190 49 49 chr4 66064320 66064381 -89565739 - MIRc SINE MIR -119 149 89 9 1089 219 204 0 0 chr4 66065072 66065121 -89564999 + (CCCCAG)n Simple_repeat Simple_repeat 4 52 0 9 1089 329 215 0 11 chr4 66065220 66065314 -89564806 + (CGG)n Simple_repeat Simple_repeat 2 94 0 1 1089 30 27 0 0 chr4 66065355 66065392 -89564728 + GC_rich Low_complexity Low_complexity 1 37 0 1 1089 208 205 24 49 chr4 66065542 66065624 -89564496 + (CCCCG)n Simple_repeat Simple_repeat 5 84 0 1 1089 450 0 0 0 chr4 66066412 66066462 -89563658 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1089 324 0 0 0 chr4 66067603 66067639 -89562481 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1 1089 189 353 0 29 chr4 66067817 66067887 -89562233 - L2c LINE L2 -212 3175 3108 1 1089 342 169 0 0 chr4 66068370 66068435 -89561685 + MLT1N2 LTR MaLR 494 558 -4 1 1089 185 0 40 0 chr4 66068721 66068746 -89561374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1089 733 68 0 0 chr4 66068751 66068854 -89561266 - B1_Mm SINE Alu -5 142 40 1 1089 13980 3 0 0 chr4 66069079 66071304 -89558816 - L1Md_A LINE L1 0 6582 4358 1 1089 329 299 81 34 chr4 66071726 66071875 -89558245 + MIRb SINE MIR 103 258 -10 1 1089 440 362 62 59 chr4 66072318 66072591 -89557529 + B4 SINE B4 1 274 -18 1 1089 591 15 0 0 chr4 66073771 66073839 -89556281 + (TTC)n Simple_repeat Simple_repeat 2 69 0 1 1089 318 294 0 0 chr4 66075330 66075415 -89554705 - Lx8 LINE L1 -365 7108 7024 1 1089 495 0 0 0 chr4 66076398 66076453 -89553667 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1089 187 395 33 26 chr4 66076771 66076922 -89553198 - L2 LINE L2 -511 2908 2757 1 1089 638 287 68 10 chr4 66076936 66077183 -89552937 + B4 SINE B4 6 267 -25 1 1089 351 0 0 0 chr4 66077183 66077222 -89552898 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1089 297 0 0 0 chr4 66077230 66077263 -89552857 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1089 540 0 0 0 chr4 66077263 66077322 -89552798 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1089 318 247 117 11 chr4 66078291 66078385 -89551735 - Lx8 LINE L1 -1546 5927 5824 1 1089 1380 276 102 35 chr4 66078400 66078947 -89551173 + Lx8 LINE L1 6886 7469 -4 1 1089 289 283 157 19 chr4 66079464 66079572 -89550548 + L2a LINE L2 3304 3426 0 1 1089 312 48 0 0 chr4 66079651 66079693 -89550427 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 1 1089 457 318 32 32 chr4 66079698 66079854 -89550266 - B3A SINE B2 -42 156 1 1 1089 345 243 213 9 chr4 66080569 66080677 -89549443 + RSINE1 SINE B4 4 133 -32 1 1089 720 33 0 0 chr4 66080682 66080773 -89549347 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1089 182 0 107 0 chr4 66080816 66080844 -89549276 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1089 540 0 0 0 chr4 66081867 66081927 -89548193 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1089 417 219 51 26 chr4 66083025 66083142 -89546978 - RSINE1 SINE B4 -37 128 9 1 1089 297 207 48 12 chr4 66083157 66083240 -89546880 - PB1D10 SINE Alu 0 117 32 1 1089 722 247 88 0 chr4 66083625 66083819 -89546301 + B3 SINE B2 3 213 -3 1 1089 252 284 25 0 chr4 66084136 66084217 -89545903 + MTEb LTR MaLR 287 369 -10 1 1089 318 300 140 47 chr4 66084237 66084559 -89545561 + ORR1E LTR MaLR 2 353 -6 1 1089 631 350 85 21 chr4 66084674 66085119 -89545001 - Lx8 LINE L1 -93 7551 6941 1 1089 227 264 78 52 chr4 66085333 66085449 -89544671 + MLT1H LTR MaLR 431 549 0 1 1089 906 110 17 0 chr4 66086275 66086448 -89543672 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1089 180 176 0 42 chr4 66086448 66086519 -89543601 + (TATG)n Simple_repeat Simple_repeat 3 70 0 1 1089 459 0 0 0 chr4 66086541 66086592 -89543528 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1089 224 340 54 27 chr4 66087356 66087504 -89542616 - MIR SINE MIR -71 191 40 1 1089 303 28 0 0 chr4 66088626 66088662 -89541458 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1089 340 20 41 0 chr4 66088668 66088717 -89541403 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1089 318 291 42 8 chr4 66089613 66089731 -89540389 + MER20 DNA MER1_type 91 212 -7 1 1089 673 273 48 19 chr4 66090535 66090744 -89539376 + B3 SINE B2 2 216 0 1 1089 302 296 91 18 chr4 66091437 66091547 -89538573 - PB1D9 SINE Alu -1 119 2 1 1089 283 311 11 0 chr4 66091547 66091637 -89538483 - 4.5SRNA scRNA scRNA -3 91 1 1 1089 396 0 0 0 chr4 66091958 66092002 -89538118 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1089 1600 27 27 0 chr4 66093695 66093882 -89536238 - B2_Mm1a SINE B2 0 193 2 1 1089 539 363 36 24 chr4 66094800 66095133 -89534987 + MLT1F LTR MaLR 34 370 -178 1 1089 5210 51 5 0 chr4 66095863 66096493 -89533627 - L1Md_F2 LINE L1 0 6582 5950 1 1089 3269 25 5 0 chr4 66096493 66096921 -89533199 + L1Md_F2 LINE L1 5526 5959 -623 1 1089 225 0 0 0 chr4 66097408 66097433 -89532687 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1089 739 330 64 42 chr4 66098579 66098936 -89531184 - ORR1D2 LTR MaLR -5 365 1 1 1089 32087 81 7 1 chr4 66100053 66105217 -89524903 + L1Md_F2 LINE L1 392 5585 -298 1 1089 7881 55 10 3 chr4 66105218 66106204 -89523916 + L1Md_F2 LINE L1 5587 6579 -3 1 1089 242 282 0 53 chr4 66107172 66107247 -89522873 + RSINE1 SINE B4 8 78 -87 1 1089 558 0 0 0 chr4 66107497 66107559 -89522561 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1089 522 0 0 0 chr4 66107559 66107616 -89522504 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1089 23 0 0 0 chr4 66107887 66107910 -89522210 + AT_rich Low_complexity Low_complexity 1 23 0 1 1089 294 50 0 0 chr4 66108295 66108335 -89521785 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1089 1682 163 88 13 chr4 66109211 66109528 -89520592 - Lx5 LINE L1 0 7050 6710 1 1089 1280 62 62 6 chr4 66109541 66109718 -89520402 - B2_Mm2 SINE B2 -7 188 2 1 1089 3713 87 8 23 chr4 66109759 66110289 -89519831 - L1Md_F2 LINE L1 0 6582 6061 1 1089 203 293 24 12 chr4 66110511 66110594 -89519526 - MIRb SINE MIR -45 223 140 1 1089 1126 75 0 0 chr4 66112552 66112699 -89517421 + B1_Mm SINE Alu 1 147 0 1 1089 285 146 0 0 chr4 66112701 66112749 -89517371 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1089 25 31 0 0 chr4 66113916 66113948 -89516172 + AT_rich Low_complexity Low_complexity 1 32 0 1 1089 1172 174 28 0 chr4 66114637 66114855 -89515265 - Lx4A LINE L1 -153 5724 5501 1 1089 5644 167 84 42 chr4 66114853 66115678 -89514442 + Lx4A LINE L1 5758 6594 -464 1 1089 1675 46 0 14 chr4 66115678 66115900 -89514220 - L1Md_F3 LINE L1 0 6584 6366 1 1089 5644 167 84 42 chr4 66115900 66116304 -89513816 + Lx4A LINE L1 6595 7039 -19 1 1089 332 43 22 0 chr4 66116304 66116350 -89513770 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1089 2483 164 104 93 chr4 66116803 66117407 -89512713 - RMER19C LTR ERVK 0 611 1 1 1089 198 0 0 0 chr4 66117511 66117533 -89512587 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1089 342 0 0 0 chr4 66117635 66117673 -89512447 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 1 1089 602 228 285 0 chr4 66117673 66117831 -89512289 - B3 SINE B2 -13 203 1 1 1089 292 297 11 32 chr4 66117833 66117927 -89512193 - B4A SINE B4 -199 93 2 1 1089 624 299 92 68 chr4 66117972 66118546 -89511574 - L1MB4 LINE L1 -93 6087 5500 1 1089 636 14 0 0 chr4 66118553 66118626 -89511494 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 1 1089 29542 80 3 9 chr4 66119963 66124976 -89505144 + L1Md_F2 LINE L1 600 5585 -298 1 1089 7739 54 16 1 chr4 66124977 66125946 -89504174 + L1Md_F2 LINE L1 5587 6569 -13 1 1089 285 29 0 0 chr4 66125950 66125984 -89504136 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 1089 255 359 45 8 chr4 66126155 66126287 -89503833 + ID_B1 SINE B4 86 222 -2 1 1089 220 70 0 44 chr4 66126314 66126359 -89503761 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1089 1227 244 25 3 chr4 66126561 66126877 -89503243 - RCHARR1 DNA MER1_type -123 851 529 1 1089 254 235 92 23 chr4 66127112 66127199 -89502921 + MIRb SINE MIR 99 191 -77 1 1089 1074 299 74 6 chr4 66128171 66128524 -89501596 + MTE2a LTR MaLR 3 379 0 1 1089 553 232 59 102 chr4 66129729 66129916 -89500204 + B3 SINE B2 8 186 -9 1 1089 354 45 0 0 chr4 66130239 66130283 -89499837 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1089 345 24 0 0 chr4 66130440 66130482 -89499638 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1089 1825 180 89 97 chr4 66130578 66131106 -89499014 - RLTR28 LTR ERVL 0 524 1 1 1089 2537 241 24 60 chr4 66131288 66132004 -89498116 - Lx5 LINE L1 0 7050 6361 1 1089 4961 165 38 16 chr4 66132021 66133011 -89497109 + Lx5 LINE L1 4877 5898 -1152 1 1089 3493 178 50 12 chr4 66133011 66133678 -89496442 + RLTR17 LTR ERVK 1 692 0 1 1089 3367 168 43 22 chr4 66133678 66134108 -89496012 + Lx5 LINE L1 5899 6338 -712 1 1089 21 0 0 0 chr4 66134141 66134162 -89495958 + AT_rich Low_complexity Low_complexity 1 21 0 1 1089 516 299 19 38 chr4 66134162 66134322 -89495798 - ID_B1 SINE B4 -21 203 47 1 1089 561 243 97 0 chr4 66134321 66134465 -89495655 + RMER15 LTR ERVL 418 575 0 1 1089 930 277 49 133 chr4 66134580 66135689 -89494431 + L1MC3 LINE L1 6077 7092 -693 1 1089 345 102 0 0 chr4 66135776 66135835 -89494285 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1089 376 321 120 36 chr4 66135945 66136246 -89493874 + L1MC3 LINE L1 7446 7771 -14 1 1089 180 0 0 0 chr4 66138048 66138068 -89492052 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 1089 1431 281 73 23 chr4 66138068 66138646 -89491474 - Lx5 LINE L1 -43 7417 6478 1 1089 353 316 22 22 chr4 66138747 66138886 -89491234 + MIRb SINE MIR 23 161 -107 1 1089 622 229 32 8 chr4 66139106 66139229 -89490891 + RSINE1 SINE B4 5 130 -35 1 1089 240 35 0 0 chr4 66139257 66139286 -89490834 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 1 1089 198 214 53 18 chr4 66140651 66140708 -89489412 - MIR SINE MIR -187 75 17 1 1089 1509 211 64 35 chr4 66140743 66141116 -89489004 + ORR1C2 LTR MaLR 1 384 0 1 1089 988 299 55 14 chr4 66141442 66141717 -89488403 - MTEb LTR MaLR 0 379 94 2 1089 23 33 0 0 chr4 66141734 66141764 -89488356 + AT_rich Low_complexity Low_complexity 1 30 0 2 1089 683 257 0 0 chr4 66141784 66141928 -89488192 + B1_Mus1 SINE Alu 2 145 -3 2 1089 264 91 0 0 chr4 66141928 66141972 -89488148 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1089 553 245 130 34 chr4 66141976 66142183 -89487937 + Tigger7 DNA MER2_type 2256 2482 -9 2 1089 384 340 61 50 chr4 66142196 66142475 -89487645 + MLT1C LTR MaLR 55 336 -131 2 1089 692 291 151 26 chr4 66142635 66142946 -89487174 + MTEb LTR MaLR 28 377 -2 2 1089 408 341 48 0 chr4 66142981 66143107 -89487013 + B1F1 SINE Alu 12 143 -6 2 1089 207 162 0 0 chr4 66143787 66143824 -89486296 + G-rich Low_complexity Low_complexity 5 41 0 2 1089 315 0 0 0 chr4 66145164 66145199 -89484921 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1089 417 278 128 0 chr4 66145211 66145344 -89484776 - RSINE1 SINE B4 -14 151 2 2 1089 1046 283 10 41 chr4 66145489 66145784 -89484336 - B4A SINE B4 -6 286 1 2 1089 301 342 69 60 chr4 66145958 66146191 -89483929 - L1MC LINE L1 -2150 5732 5498 2 1089 2165 61 0 0 chr4 66146836 66147116 -89483004 + L1Md_F2 LINE L1 5306 5585 -298 2 1089 7626 64 11 11 chr4 66147117 66148112 -89482008 + L1Md_F2 LINE L1 5587 6581 -1 2 1089 1050 264 158 33 chr4 66148381 66148749 -89481371 - MTD LTR MaLR 0 419 6 2 1089 253 305 93 43 chr4 66148967 66149128 -89480992 + MER119 DNA MER1_type 415 583 0 2 1089 211 335 108 17 chr4 66149128 66149263 -89480857 - MIRb SINE MIR -89 179 39 2 1089 191 373 8 17 chr4 66150166 66150286 -89479834 + MIR SINE MIR 75 193 -69 2 1089 23460 63 2 9 chr4 66150295 66151106 -89479014 - L1Md_F2 LINE L1 0 6582 5778 2 1089 2957 48 51 0 chr4 66151106 66151477 -89478643 - RLTR10 LTR ERVK 0 390 1 2 1089 23460 65 4 8 chr4 66151477 66151961 -89478159 - L1Md_F2 LINE L1 -106 5777 5299 2 1089 5284 3 0 0 chr4 66151961 66152543 -89477577 - L1Md_A LINE L1 0 6582 6001 2 1089 23460 65 4 8 chr4 66152543 66155210 -89474910 - L1Md_F2 LINE L1 -585 5298 2634 2 1089 180 296 71 36 chr4 66156303 66156359 -89473761 - MIRc SINE MIR -188 80 23 2 1089 25 0 0 0 chr4 66156695 66156720 -89473400 + AT_rich Low_complexity Low_complexity 1 25 0 2 1089 3897 73 4 8 chr4 66156739 66157253 -89472867 - L1Md_F2 LINE L1 -3 6579 6068 2 1089 1537 207 46 38 chr4 66157297 66157668 -89472452 + ORR1C1 LTR MaLR 5 378 0 2 1089 187 200 58 39 chr4 66158343 66158395 -89471725 - MIRc SINE MIR -117 151 99 2 1089 13729 24 2 0 chr4 66158589 66160954 -89469166 - L1Md_T LINE L1 0 6582 4214 2 1089 380 134 0 29 chr4 66160962 66161031 -89469089 + L1_Mm LINE L1 4176 4242 -1641 2 1089 1216 282 109 14 chr4 66161123 66161565 -89468555 - Lx8 LINE L1 -83 7390 6907 2 1089 237 352 29 0 chr4 66161641 66161746 -89468374 - Lx8 LINE L1 -586 6887 6780 2 1089 209 351 59 52 chr4 66163134 66163269 -89466851 - L2c LINE L2 -233 3154 3019 2 1089 348 258 176 8 chr4 66164242 66164367 -89465753 - Charlie19a DNA Charlie -205 181 36 2 1089 829 303 65 48 chr4 66164678 66164969 -89465151 + MTE2a LTR MaLR 63 358 -21 2 1089 287 340 0 29 chr4 66165034 66165137 -89464983 - PB1D10 SINE Alu -8 109 10 2 1089 22 0 0 0 chr4 66165175 66165197 -89464923 + AT_rich Low_complexity Low_complexity 1 22 0 2 1089 1081 186 80 5 chr4 66165509 66165709 -89464411 + URR1A DNA MER1_type 1 215 -11 2 1089 6747 102 18 9 chr4 66165709 66167173 -89462947 + L1_Mus3 LINE L1 5137 6623 -15 2 1089 644 82 10 0 chr4 66167173 66167271 -89462849 + L1_Mus1 LINE L1 6469 6567 0 2 1089 21 36 0 0 chr4 66167308 66167336 -89462784 + AT_rich Low_complexity Low_complexity 1 28 0 2 1089 378 0 0 0 chr4 66167711 66167753 -89462367 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1089 1373 61 5 10 chr4 66167979 66168179 -89461941 - L1Md_F3 LINE L1 -483 6101 5903 2 1089 3852 45 6 30 chr4 66168179 66168684 -89461436 + L1Md_F3 LINE L1 6090 6582 -2 2 1089 31329 69 1 3 chr4 66168762 66173968 -89456152 + L1Md_F2 LINE L1 298 5589 -297 2 1089 7584 64 8 1 chr4 66173968 66174957 -89455163 + L1Md_F2 LINE L1 5590 6585 0 2 1089 315 0 0 0 chr4 66176084 66176119 -89454001 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1089 301 318 94 7 chr4 66177376 66177525 -89452595 - MIR3 SINE MIR -35 173 12 2 1089 1242 107 39 0 chr4 66177614 66177792 -89452328 + B2_Mm1t SINE B2 2 186 -7 2 1089 237 188 0 0 chr4 66177792 66177840 -89452280 - Lx8 LINE L1 -10 7463 7416 2 1089 537 16 0 0 chr4 66177914 66177976 -89452144 + (TCCC)n Simple_repeat Simple_repeat 2 63 0 2 1089 451 290 63 29 chr4 66178041 66178215 -89451905 - B3A SINE B2 -3 195 16 2 1089 459 0 0 0 chr4 66178250 66178301 -89451819 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1089 243 318 0 0 chr4 66178678 66178744 -89451376 - ID4 SINE ID -16 67 2 2 1089 563 276 120 50 chr4 66178809 66179126 -89450994 - Lx9 LINE L1 -76 7568 7230 2 1089 194 174 22 0 chr4 66179781 66179827 -89450293 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 2 1089 273 266 18 18 chr4 66179866 66179977 -89450143 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 2 1089 188 286 143 0 chr4 66180308 66180364 -89449756 - MIR SINE MIR -56 152 89 2 1089 461 328 80 6 chr4 66180392 66180567 -89449553 + MER20 DNA MER1_type 32 219 0 2 1089 402 386 30 0 chr4 66181019 66181216 -89448904 + MIR SINE MIR 12 214 -48 2 1089 465 19 0 0 chr4 66181310 66181364 -89448756 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1089 2702 44 57 17 chr4 66181364 66181713 -89448407 - L1_Mus1 LINE L1 -2 6565 6203 2 1089 492 337 4 12 chr4 66182517 66182766 -89447354 - MIR SINE MIR -15 247 1 2 1089 183 306 63 16 chr4 66182844 66182907 -89447213 + MIR3 SINE MIR 142 207 -1 2 1089 483 328 63 0 chr4 66182981 66183155 -89446965 - MIR SINE MIR 0 262 78 2 1089 972 243 19 9 chr4 66183801 66184013 -89446107 - B3 SINE B2 -2 214 1 2 1089 629 289 48 5 chr4 66184042 66184230 -89445890 + ID_B1 SINE B4 2 197 -27 2 1089 250 271 51 0 chr4 66184448 66184507 -89445613 - MIR SINE MIR -84 124 63 2 1089 202 284 15 15 chr4 66186113 66186181 -89443939 + CT-rich Low_complexity Low_complexity 6 73 0 2 1089 792 299 14 5 chr4 66186251 66186459 -89443661 - B3 SINE B2 -1 215 6 2 1089 1878 226 17 17 chr4 66186696 66187115 -89443005 - MTD LTR MaLR 0 419 1 2 1089 223 250 0 38 chr4 66187429 66187508 -89442612 + (TGAA)n Simple_repeat Simple_repeat 2 77 0 2 1089 214 288 0 0 chr4 66187564 66187630 -89442490 + (TGAA)n Simple_repeat Simple_repeat 2 67 0 2 1089 883 261 19 10 chr4 66187772 66187981 -89442139 + B3 SINE B2 1 211 -5 2 1089 1133 113 0 6 chr4 66188154 66188332 -89441788 + (GAA)n Simple_repeat Simple_repeat 1 177 0 2 1089 231 114 0 0 chr4 66188334 66188369 -89441751 + (GGA)n Simple_repeat Simple_repeat 1 35 0 2 1089 369 0 0 0 chr4 66189590 66189631 -89440489 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1089 319 182 167 13 chr4 66190031 66190181 -89439939 - L1M4c LINE L1 -5239 1145 973 2 1089 337 307 85 12 chr4 66190278 66190443 -89439677 + Lx8 LINE L1 6681 6857 -616 2 1089 1638 199 0 0 chr4 66190446 66190733 -89439387 + Lx4A LINE L1 6756 7042 -16 2 1089 2004 139 3 58 chr4 66190736 66191080 -89439040 + ORR1A2 LTR MaLR 3 327 0 2 1089 284 316 188 8 chr4 66191101 66191340 -89438780 - Lx9 LINE L1 -260 7384 7103 2 1090 396 0 0 0 chr4 66191378 66191422 -89438698 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1090 244 218 26 0 chr4 66191555 66191633 -89438487 + Lx9 LINE L1 7560 7639 -5 2 1090 1119 284 113 28 chr4 66191634 66192068 -89438052 - L1M4c LINE L1 -5892 492 22 2 1090 416 229 40 30 chr4 66192541 66192640 -89437480 + B4A SINE B4 189 288 -4 2 1090 571 0 0 0 chr4 66193687 66193759 -89436361 - L1Md_A LINE L1 0 6582 6511 2 1090 2045 153 88 10 chr4 66194467 66194863 -89435257 - Lx4B LINE L1 -5 7053 6627 2 1090 363 255 0 0 chr4 66195181 66195287 -89434833 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 1090 243 253 0 0 chr4 66195287 66195382 -89434738 + GA-rich Low_complexity Low_complexity 1 95 0 2 1090 185 191 42 21 chr4 66196649 66196697 -89433423 - L4 LINE RTE -316 1713 1665 2 1090 255 356 0 9 chr4 66198122 66198227 -89431893 - MIRb SINE MIR -7 261 158 2 1090 1326 300 24 3 chr4 66198294 66198632 -89431488 - MTEa LTR MaLR -34 345 1 2 1090 191 286 0 35 chr4 66199643 66199701 -89430419 + L3 LINE CR1 3932 3987 -502 2 1090 25 0 0 0 chr4 66199981 66200006 -89430114 + AT_rich Low_complexity Low_complexity 1 25 0 2 1090 659 65 11 0 chr4 66200711 66200804 -89429316 + (TAA)n Simple_repeat Simple_repeat 2 95 0 2 1090 236 283 50 0 chr4 66202612 66202672 -89427448 - MER5B DNA MER1_type -15 163 101 2 1090 297 128 0 0 chr4 66202734 66202781 -89427339 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 2 1090 507 17 0 0 chr4 66202809 66202869 -89427251 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1090 482 276 110 31 chr4 66202869 66202996 -89427124 - RSINE1 SINE B4 -27 138 2 2 1090 236 250 0 18 chr4 66202998 66203055 -89427065 + MER5B DNA MER1_type 117 172 -6 2 1090 754 219 7 0 chr4 66203422 66203568 -89426552 + B1_Mur2 SINE Alu 3 149 0 2 1090 310 116 14 28 chr4 66203569 66203640 -89426480 + (CAAA)n Simple_repeat Simple_repeat 1 70 0 2 1090 396 0 0 0 chr4 66204642 66204686 -89425434 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1090 3983 162 79 22 chr4 66206038 66206852 -89423268 + RMER13A LTR ERVK 1 860 0 2 1090 230 75 0 48 chr4 66207489 66207531 -89422589 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 2 1090 1219 235 107 0 chr4 66207752 66208024 -89422096 - Lx6 LINE L1 -27 7433 7133 2 1090 7489 49 4 12 chr4 66208022 66209242 -89420878 + L1Md_F2 LINE L1 5345 6559 -23 2 1090 405 0 0 0 chr4 66209242 66209287 -89420833 + (TAA)n Simple_repeat Simple_repeat 1 45 0 3 1090 1197 282 18 130 chr4 66209301 66209665 -89420455 - Lx6 LINE L1 -306 7154 6835 2 1090 396 0 0 0 chr4 66209665 66209709 -89420411 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1090 1197 282 18 130 chr4 66209709 66209834 -89420286 - Lx6 LINE L1 -626 6834 6736 2 1090 1148 41 0 52 chr4 66209834 66209989 -89420131 - B1_Mm SINE Alu 0 147 1 3 1090 1197 282 18 130 chr4 66209989 66210151 -89419969 - Lx6 LINE L1 -725 6735 6575 2 1090 342 0 0 0 chr4 66210770 66210808 -89419312 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1090 381 93 0 0 chr4 66210925 66210979 -89419141 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1090 272 341 64 17 chr4 66212215 66212388 -89417732 - Tigger8 DNA MER2_type -13 653 473 3 1090 261 163 0 0 chr4 66212490 66212539 -89417581 + CT-rich Low_complexity Low_complexity 1 49 0 3 1090 411 319 78 7 chr4 66212695 66212837 -89417283 - MER5A DNA MER1_type -8 181 30 3 1090 216 270 32 0 chr4 66212871 66212934 -89417186 - MIR SINE MIR -74 188 124 3 1090 444 288 71 63 chr4 66213028 66213280 -89416840 - Tigger8 DNA MER2_type -297 369 116 3 1090 287 291 69 35 chr4 66213414 66213617 -89416503 - L1MA6 LINE L1 -2 6298 6089 3 1090 1588 264 74 72 chr4 66214057 66214596 -89415524 + RMER15 LTR ERVL 32 571 -4 3 1090 330 287 109 11 chr4 66215070 66215253 -89414867 + MIRb SINE MIR 1 201 -67 3 1090 1072 326 92 26 chr4 66216399 66216899 -89413221 + MT2A LTR ERVL 1 533 0 3 1090 240 244 26 0 chr4 66217572 66217650 -89412470 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 3 1090 509 301 130 0 chr4 66217655 66217801 -89412319 - RSINE1 SINE B4 0 165 1 3 1090 192 346 119 19 chr4 66217863 66218022 -89412098 + MIR SINE MIR 80 254 -8 3 1090 227 204 0 0 chr4 66218940 66218989 -89411131 + T-rich Low_complexity Low_complexity 1 49 0 3 1090 3236 64 5 0 chr4 66218993 66219400 -89410720 - L1_Mus1 LINE L1 -2 6565 6157 3 1090 2305 79 9 12 chr4 66220618 66220961 -89409159 + L1_Mus3 LINE L1 6303 6638 0 3 1090 1073 247 52 71 chr4 66221355 66221834 -89408286 - L1_Mur3 LINE L1 -181 5699 5230 3 1090 304 300 0 0 chr4 66221910 66222000 -89408120 + GA-rich Low_complexity Low_complexity 1 90 0 3 1090 242 159 333 0 chr4 66222007 66222070 -89408050 + RLTR42 LTR ERVK 1 84 -155 3 1090 482 161 35 0 chr4 66222090 66222177 -89407943 + RLTR42 LTR ERVK 150 239 0 3 1090 468 219 16 31 chr4 66222255 66222382 -89407738 + RLTR42-int LTR ERVK 100 224 -5298 3 1090 297 0 0 0 chr4 66222382 66222415 -89407705 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1090 461 121 22 0 chr4 66222481 66222572 -89407548 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 3 1090 812 169 23 0 chr4 66222577 66222749 -89407371 - Lx2B LINE L1 -23 6977 6802 3 1090 293 314 10 19 chr4 66222749 66222853 -89407267 + RLTR42-int LTR ERVK 337 439 -5083 3 1090 1999 196 43 11 chr4 66222978 66223441 -89406679 + RLTR42-int LTR ERVK 1411 1888 -3634 3 1090 2012 195 72 143 chr4 66223550 66224422 -89405698 + RLTR42-int LTR ERVK 1870 2679 -2843 3 1090 3204 147 66 34 chr4 66224422 66225844 -89404276 + L1_Mur1 LINE L1 3 1717 -4169 3 1090 2520 44 0 0 chr4 66225841 66226157 -89403963 - L1Md_F2 LINE L1 -674 5908 5593 3 1090 3722 75 7 2 chr4 66226156 66226693 -89403427 - L1_Mm LINE L1 -1069 4814 4275 3 1090 5200 68 3 7 chr4 66226693 66227378 -89402742 + L1Md_F2 LINE L1 5900 6581 -1 3 1090 26542 94 6 13 chr4 66227390 66231510 -89398610 + L1_Mur1 LINE L1 1704 5796 -90 3 1090 5226 92 12 7 chr4 66231508 66232276 -89397844 + L1_Mus3 LINE L1 5866 6637 -1 3 1090 7689 95 47 25 chr4 66232292 66233490 -89396630 + Lx3_Mus LINE L1 5783 7006 -3 3 1090 1202 204 68 20 chr4 66233490 66233785 -89396335 + RLTR42-int LTR ERVK 2669 2977 -2545 3 1090 2906 191 6 6 chr4 66233790 66234306 -89395814 - RMER20A LTR ERVK 0 516 1 3 1090 1208 180 9 0 chr4 66234306 66234534 -89395586 + RLTR42-int LTR ERVK 2978 3207 -2315 3 1090 2463 166 62 76 chr4 66234584 66235371 -89394749 + RLTR42-int LTR ERVK 3206 3981 -1541 3 1090 7737 50 1 1 chr4 66235371 66236953 -89393167 - L1Md_F2 LINE L1 -3 6579 4998 3 1090 1555 157 63 9 chr4 66236955 66237270 -89392850 + RLTR42-int LTR ERVK 3974 4305 -1217 3 1090 1096 188 67 9 chr4 66237276 66237501 -89392619 + RLTR42-int LTR ERVK 5285 5522 0 3 1090 704 210 104 6 chr4 66237501 66237664 -89392456 + RLTR42 LTR ERVK 1 179 -60 3 1090 35313 30 1 7 chr4 66237801 66242973 -89387147 + L1Md_A LINE L1 453 5586 -297 3 1090 8312 40 0 0 chr4 66242973 66243969 -89386151 + L1Md_A LINE L1 5587 6582 0 3 1090 265 312 0 104 chr4 66244147 66244272 -89385848 - ID_B1 SINE B4 -7 217 106 3 1090 247 342 17 51 chr4 66244740 66244857 -89385263 - MIR3 SINE MIR -6 202 90 3 1090 564 15 0 0 chr4 66244912 66244977 -89385143 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1090 468 0 0 0 chr4 66244977 66245028 -89385092 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1090 219 36 0 0 chr4 66245028 66245056 -89385064 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1090 263 253 40 81 chr4 66245056 66245155 -89384965 - LTR48 LTR ERV1 -631 156 62 3 1090 216 0 0 0 chr4 66245249 66245273 -89384847 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1090 440 242 76 23 chr4 66246340 66246471 -89383649 - MER5A DNA MER1_type -43 146 9 3 1090 198 128 0 0 chr4 66248319 66248358 -89381762 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 3 1090 510 173 0 0 chr4 66248381 66248485 -89381635 + (CA)n Simple_repeat Simple_repeat 2 105 0 3 1090 667 259 13 22 chr4 66248493 66248722 -89381398 - L1MA4 LINE L1 -375 5925 5699 3 1090 429 20 0 0 chr4 66249027 66249077 -89381043 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1090 275 0 29 0 chr4 66249077 66249111 -89381009 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1090 212 261 0 8 chr4 66249383 66249503 -89380617 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1090 222 269 14 43 chr4 66251341 66251411 -89378709 + PB1D10 SINE Alu 10 77 -40 3 1090 277 188 12 12 chr4 66251417 66251503 -89378617 + CT-rich Low_complexity Low_complexity 2 87 0 3 1090 301 129 29 0 chr4 66251502 66251572 -89378548 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1090 789 109 69 15 chr4 66252269 66252399 -89377721 + ORR1B2 LTR MaLR 231 367 0 3 1090 284 70 0 23 chr4 66252499 66252543 -89377577 + (GGGAGA)n Simple_repeat Simple_repeat 3 45 0 3 1090 270 323 40 10 chr4 66253195 66253295 -89376825 - MLT1J2 LTR MaLR -301 147 45 3 1090 510 323 0 114 chr4 66254837 66255064 -89375056 - B4A SINE B4 -87 205 5 3 1090 372 43 0 0 chr4 66255249 66255295 -89374825 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1090 257 310 81 43 chr4 66255617 66255826 -89374294 + LTR83 LTR ERVL 54 270 -510 3 1090 3978 137 100 4 chr4 66256356 66257038 -89373082 - Lx2B LINE L1 -9 6991 6245 3 1090 510 276 66 12 chr4 66258881 66259045 -89371075 + ORR1D2 LTR MaLR 215 379 0 3 1090 579 29 0 0 chr4 66259048 66259117 -89371003 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1090 341 291 122 72 chr4 66259141 66259404 -89370716 - L1MC4 LINE L1 -457 7585 7310 3 1090 301 341 16 0 chr4 66259433 66259556 -89370564 - L1MC4 LINE L1 -777 7265 7141 3 1090 270 0 0 0 chr4 66259593 66259623 -89370497 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1090 24 0 0 0 chr4 66259837 66259861 -89370259 + AT_rich Low_complexity Low_complexity 1 24 0 3 1090 842 309 68 0 chr4 66260416 66260681 -89369439 - B4A SINE B4 -4 288 6 3 1090 241 338 0 13 chr4 66260698 66260776 -89369344 - MIRc SINE MIR -124 144 68 3 1090 807 315 39 21 chr4 66261124 66261458 -89368662 - RMER5 LTR ERV1 -1 533 194 3 1090 271 275 0 0 chr4 66261514 66261583 -89368537 - RMER5 LTR ERV1 -421 113 45 3 1090 1105 246 71 14 chr4 66261625 66261979 -89368141 - ORR1D1 LTR MaLR 0 374 1 3 1090 219 69 0 0 chr4 66262082 66262111 -89368009 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 3 1090 1160 102 11 0 chr4 66262111 66262288 -89367832 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1090 227 329 0 40 chr4 66262294 66262370 -89367750 - ID4_ SINE ID -8 75 3 3 1090 699 284 0 0 chr4 66262370 66262539 -89367581 + MER58A DNA MER1_type 56 224 0 3 1090 361 301 0 8 chr4 66265905 66266039 -89364081 + L1MB7 LINE L1 5748 5880 -304 3 1090 347 366 23 17 chr4 66266118 66266293 -89363827 + L1MB7 LINE L1 5999 6174 0 3 1090 1465 340 43 14 chr4 66268036 66268886 -89361234 - Lx8 LINE L1 -18 7455 6581 3 1090 435 252 0 98 chr4 66268963 66269086 -89361034 + PB1D10 SINE Alu 7 117 0 3 1090 2196 58 0 3 chr4 66270407 66270701 -89359419 - L1_Mus2 LINE L1 -325 6241 5949 3 1090 2286 81 3 3 chr4 66270703 66271014 -89359106 + L1_Mus2 LINE L1 6244 6554 -12 3 1090 1031 120 0 6 chr4 66271033 66271201 -89358919 + (TTTC)n Simple_repeat Simple_repeat 3 169 0 3 1090 585 341 10 5 chr4 66271202 66271411 -89358709 - B3 SINE B2 -6 210 1 3 1090 2345 69 119 11 chr4 66272084 66272436 -89357684 + RLTR10 LTR ERVK 1 390 0 3 1090 479 217 9 0 chr4 66274052 66274167 -89355953 - Lx9 LINE L1 -648 6996 6881 3 1090 715 238 90 0 chr4 66274169 66274425 -89355695 + Lx9 LINE L1 7366 7644 0 3 1090 249 119 0 0 chr4 66275204 66275246 -89354874 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1090 658 325 36 40 chr4 66275274 66275527 -89354593 - B4A SINE B4 -39 253 2 3 1090 575 304 41 0 chr4 66275594 66275765 -89354355 - MER58B DNA MER1_type -1 340 163 3 1090 21 0 0 0 chr4 66275821 66275842 -89354278 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 2001 203 13 5 chr4 66276561 66276937 -89353183 - Lx5 LINE L1 -3 7047 6669 3 1090 227 362 60 60 chr4 66278200 66278385 -89351735 + L3 LINE CR1 4176 4360 -129 3 1090 202 300 14 54 chr4 66279659 66279733 -89350387 + MIRc SINE MIR 48 118 -150 3 1090 419 214 170 26 chr4 66284430 66284685 -89345435 - MER5C DNA MER1_type -3 310 27 3 1090 1023 79 17 47 chr4 66285124 66285296 -89344824 + L1_Mus3 LINE L1 6464 6630 -8 3 1090 288 0 0 0 chr4 66286306 66286338 -89343782 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1090 23 0 0 0 chr4 66286827 66286850 -89343270 + AT_rich Low_complexity Low_complexity 1 23 0 3 1090 49 101 0 0 chr4 66287188 66287356 -89342764 + AT_rich Low_complexity Low_complexity 1 168 0 3 1090 22 0 0 0 chr4 66287453 66287475 -89342645 + AT_rich Low_complexity Low_complexity 1 22 0 3 1090 479 264 40 58 chr4 66287607 66287780 -89342340 - MER5B DNA MER1_type -6 172 3 3 1090 266 331 27 5 chr4 66288304 66288411 -89341709 + MIRc SINE MIR 3 114 -154 3 1090 4600 95 12 53 chr4 66288526 66289293 -89340827 - RMER17A LTR ERVK -16 735 1 3 1090 1049 82 7 20 chr4 66289514 66289663 -89340457 + B1_Mus2 SINE Alu 1 147 0 3 1090 381 307 66 42 chr4 66290624 66290913 -89339207 + MER33 DNA MER1_type 19 314 -10 3 1090 590 296 61 41 chr4 66291285 66291482 -89338638 + B3 SINE B2 16 216 0 3 1090 2043 221 109 6 chr4 66291633 66292147 -89337973 + RMER4B LTR ERVK 17 583 -2 3 1090 37945 30 1 0 chr4 66292353 66299296 -89330824 - L1Md_T LINE L1 0 6585 1 4 1090 359 340 44 32 chr4 66299401 66299559 -89330561 + MLT1A0 LTR MaLR 34 193 -172 4 1090 21 0 0 0 chr4 66299629 66299650 -89330470 + AT_rich Low_complexity Low_complexity 1 21 0 4 1090 3998 60 2 37 chr4 66299705 66300242 -89329878 + L1_Mus2 LINE L1 6044 6561 -5 4 1090 1263 216 104 23 chr4 66300402 66300748 -89329372 - ORR1D1 LTR MaLR 0 374 1 4 1090 479 311 38 27 chr4 66300858 66301119 -89329001 - L1MDa LINE L1 -767 5983 5720 4 1090 6959 152 18 14 chr4 66301129 66302354 -89327766 - Lx2B LINE L1 -3 6997 5768 4 1090 1436 100 0 5 chr4 66302499 66302711 -89327409 - L1Md_F2 LINE L1 -1 6581 6371 4 1090 8182 185 31 171 chr4 66302763 66304214 -89325906 - L1VL1 LINE L1 -104 5782 4537 4 1090 8286 30 2 3 chr4 66304214 66305201 -89324919 + L1Md_F3 LINE L1 5587 6572 -12 4 1090 8182 185 31 171 chr4 66305201 66306418 -89323702 - L1VL1 LINE L1 -1350 4536 3487 4 1090 7233 111 68 1 chr4 66306443 66308386 -89321734 - L1_Mus2 LINE L1 -2 6564 4465 4 1090 1711 125 14 7 chr4 66308386 66308677 -89321443 - L1_Mus2 LINE L1 -3386 2497 2205 4 1090 8316 47 1 1 chr4 66308812 66310296 -89319824 - L1Md_F3 LINE L1 -1 6583 5100 4 1090 6033 139 6 94 chr4 66310285 66312439 -89317681 - L1VL1 LINE L1 -3656 2230 409 4 1090 444 117 13 0 chr4 66312486 66312563 -89317557 - MusHAL1 LINE L1 -433 2279 2202 4 1090 2032 168 27 36 chr4 66312556 66312994 -89317126 - L1VL4 LINE L1 -5425 877 444 4 1090 23 33 0 0 chr4 66313072 66313102 -89317018 + AT_rich Low_complexity Low_complexity 1 30 0 4 1090 489 34 0 0 chr4 66313126 66313185 -89316935 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1090 512 344 7 7 chr4 66313188 66313340 -89316780 - B3A SINE B2 -44 154 3 4 1090 1310 119 4 58 chr4 66313510 66313751 -89316369 + Lx3A LINE L1 6754 6981 0 4 1090 604 296 56 27 chr4 66313782 66314195 -89315925 - L1MDa LINE L1 -1284 5253 4829 4 1090 464 309 16 16 chr4 66314497 66314691 -89315429 - L1MDa LINE L1 -1930 4607 4414 4 1090 1457 209 19 70 chr4 66314805 66315176 -89314944 - Lx6 LINE L1 -543 6917 6566 4 1090 210 143 0 0 chr4 66315176 66315211 -89314909 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1090 1553 177 132 14 chr4 66315244 66315599 -89314521 - Lx3B LINE L1 -3 6970 6574 4 1090 323 160 0 0 chr4 66315604 66315654 -89314466 - Lx6 LINE L1 -884 6576 6527 4 1090 268 205 44 88 chr4 66315658 66315749 -89314371 + Lx6 LINE L1 6934 7020 -676 4 1090 314 275 15 30 chr4 66315739 66315874 -89314246 + Lx2B LINE L1 6868 7000 0 4 1090 737 260 72 17 chr4 66315883 66316134 -89313986 + Lx6 LINE L1 6988 7214 -246 4 1090 600 97 0 0 chr4 66316136 66316229 -89313891 + (TTATG)n Simple_repeat Simple_repeat 2 94 0 4 1090 270 317 67 47 chr4 66316408 66316557 -89313563 - ORR1E LTR MaLR -207 152 1 4 1090 266 295 126 37 chr4 66316748 66316994 -89313126 - L1MDa LINE L1 -2319 4218 3951 4 136 34912 83 1 8 chr4 66317011 66323314 -89306806 - L1Md_F2 LINE L1 -5 6577 332 4 1091 293 282 80 40 chr4 66323426 66323677 -89306443 - L1MDa LINE L1 -2646 3891 3631 4 1091 32 26 0 0 chr4 66323713 66323752 -89306368 + AT_rich Low_complexity Low_complexity 1 39 0 4 1091 7248 102 14 25 chr4 66323752 66325008 -89305112 - L1_Mus4 LINE L1 -9 6627 5384 4 1091 234 0 0 0 chr4 66325101 66325127 -89304993 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4 1091 198 71 0 0 chr4 66325221 66325249 -89304871 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1091 27 29 0 0 chr4 66325338 66325372 -89304748 + AT_rich Low_complexity Low_complexity 1 34 0 4 1091 385 294 97 26 chr4 66325668 66325937 -89304183 - L1MDa LINE L1 -4514 2119 1832 4 1091 332 22 22 0 chr4 66326262 66326307 -89303813 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1091 21 57 0 0 chr4 66326333 66326368 -89303752 + AT_rich Low_complexity Low_complexity 1 35 0 4 1091 324 354 0 33 chr4 66326381 66326501 -89303619 - PB1D10 SINE Alu -1 116 1 4 1091 357 280 0 13 chr4 66327178 66327254 -89302866 - ID4_ SINE ID -3 80 6 4 1091 192 333 34 45 chr4 66327502 66327590 -89302530 + MIRc SINE MIR 81 167 -101 4 1091 226 397 33 27 chr4 66328993 66329143 -89300977 + MLT1H2 LTR MaLR 303 453 -36 4 1091 272 270 8 102 chr4 66329196 66329324 -89300796 + L1MEa LINE L1 18 133 -5937 4 1091 25 0 0 0 chr4 66329363 66329388 -89300732 + AT_rich Low_complexity Low_complexity 1 25 0 4 1091 1870 223 19 38 chr4 66329484 66329903 -89300217 + MTD LTR MaLR 1 411 -8 4 1091 212 317 64 46 chr4 66330745 66330854 -89299266 - MIRc SINE MIR -111 157 47 4 1091 987 126 126 0 chr4 66330860 66331034 -89299086 - L1Md_F2 LINE L1 0 6582 6387 4 1091 1128 232 55 14 chr4 66331961 66332254 -89297866 + Lx3C LINE L1 6670 6974 -2 4 1091 22 0 0 0 chr4 66333443 66333465 -89296655 + AT_rich Low_complexity Low_complexity 1 22 0 4 1091 896 89 137 0 chr4 66333522 66333668 -89296452 - L1_Mus2 LINE L1 0 6566 6401 4 1091 183 162 0 0 chr4 66333737 66333774 -89296346 + GA-rich Low_complexity Low_complexity 1 37 0 4 1091 192 182 0 0 chr4 66333888 66333932 -89296188 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1091 239 98 0 24 chr4 66333941 66333983 -89296137 - RLTR20B2 LTR ERVK -104 456 416 4 1091 10158 125 14 8 chr4 66334051 66335926 -89294194 - L1_Mus3 LINE L1 0 6638 4737 4 1091 276 77 0 0 chr4 66335926 66335965 -89294155 + (TTG)n Simple_repeat Simple_repeat 2 40 0 4 1091 10158 142 14 12 chr4 66335965 66336275 -89293845 - L1_Mus3 LINE L1 -1147 4736 4437 4 1091 441 0 0 0 chr4 66336275 66336324 -89293796 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1091 958 104 0 29 chr4 66336325 66336464 -89293656 - B1_Mm SINE Alu -12 135 1 4 1091 10158 142 14 12 chr4 66336464 66336847 -89293273 - L1_Mus3 LINE L1 -1447 4436 4052 4 1091 408 67 0 0 chr4 66336847 66336907 -89293213 + (T)n Simple_repeat Simple_repeat 1 60 0 4 1091 35431 51 1 3 chr4 66337007 66343462 -89286658 - L1Md_T LINE L1 -12 6573 37 4 1091 1960 153 0 0 chr4 66343462 66343808 -89286312 - L1_Mus3 LINE L1 -1815 4068 3723 4 1091 4996 77 0 1 chr4 66343916 66344657 -89285463 + L1Md_F2 LINE L1 5911 6582 0 4 1091 2100 23 8 23 chr4 66344869 66345134 -89284986 - L1Md_F3 LINE L1 0 6584 6324 4 1091 198 111 0 0 chr4 66345787 66345816 -89284304 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1091 1090 116 0 0 chr4 66345816 66345963 -89284157 - B1_Mus2 SINE Alu 0 147 1 4 1091 198 111 0 0 chr4 66345963 66345969 -89284151 + (T)n Simple_repeat Simple_repeat 1 6 0 4 1091 659 272 192 72 chr4 66346004 66346352 -89283768 - MTD LTR MaLR -20 399 10 4 1091 2179 131 9 6 chr4 66346429 66346768 -89283352 + Lx2 LINE L1 6639 6978 -19 4 1091 233 292 83 0 chr4 66346787 66346859 -89283261 + Tigger7 DNA MER2_type 2391 2468 -23 4 1091 704 343 120 0 chr4 66347253 66347527 -89282593 - Tigger7 DNA MER2_type -2162 329 23 4 1091 264 325 69 15 chr4 66347683 66347886 -89282234 + L1M5 LINE L1 2275 2488 -3658 4 1091 312 288 0 77 chr4 66348849 66348992 -89281128 - B1_Mur3 SINE Alu -17 132 1 4 1091 305 263 0 0 chr4 66349145 66349221 -89280899 - Lx8 LINE L1 -146 7327 7252 4 1091 248 53 0 26 chr4 66349227 66349266 -89280854 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1091 511 186 59 107 chr4 66349280 66349467 -89280653 + B2_Mm2 SINE B2 1 178 -17 4 1091 527 314 173 7 chr4 66349504 66349799 -89280321 - Lx8 LINE L1 -263 7210 6867 4 1091 580 291 13 7 chr4 66349979 66350128 -89279992 + B3A SINE B2 3 152 -46 4 1091 336 125 0 0 chr4 66350146 66350210 -89279910 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1091 949 293 53 90 chr4 66351237 66351823 -89278297 - Lx8 LINE L1 -181 7292 6729 4 1091 26 0 0 0 chr4 66352636 66352662 -89277458 + AT_rich Low_complexity Low_complexity 1 26 0 4 1091 195 100 0 0 chr4 66353559 66353589 -89276531 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1091 297 0 0 0 chr4 66354156 66354189 -89275931 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1091 261 0 0 0 chr4 66355012 66355041 -89275079 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1091 245 365 77 11 chr4 66355758 66355941 -89274179 + L2 LINE L2 2655 2849 -570 4 1091 464 32 16 0 chr4 66356833 66356895 -89273225 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1091 458 273 35 77 chr4 66358008 66358151 -89271969 - B1F SINE Alu -9 140 4 4 1091 516 32 0 0 chr4 66358379 66358441 -89271679 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1091 721 313 23 0 chr4 66358963 66359177 -89270943 + MER20 DNA MER1_type 1 219 0 4 1091 613 316 91 56 chr4 66360064 66360240 -89269880 + MER82 DNA MER2_type 1 171 -482 4 1091 489 34 0 0 chr4 66360240 66360299 -89269821 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1091 613 316 91 56 chr4 66360299 66360531 -89269589 + MER82 DNA MER2_type 172 422 -231 4 1091 8316 145 28 2 chr4 66360543 66362366 -89267754 + Lx2A LINE L1 5101 6976 -32 4 1091 254 195 0 13 chr4 66362367 66362445 -89267675 + Lx2A LINE L1 6931 7007 -1 4 1091 414 0 0 0 chr4 66362549 66362595 -89267525 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 4 1091 549 44 0 0 chr4 66362598 66362666 -89267454 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 4 1091 608 274 95 19 chr4 66362674 66362938 -89267182 - L1_Rod LINE L1 -535 5654 5309 4 1091 241 337 33 44 chr4 66363576 66363756 -89266364 + MER121 Unknown Unknown 62 239 -173 4 1091 462 36 0 0 chr4 66364180 66364236 -89265884 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1091 352 385 92 0 chr4 66364802 66364997 -89265123 + MER20 DNA MER1_type 2 214 -5 4 1091 3464 145 46 11 chr4 66364998 66365633 -89264487 + L1VL2 LINE L1 144 800 -5535 4 1091 283 176 0 0 chr4 66365634 66365685 -89264435 + L1Md_F2 LINE L1 287 337 -6282 4 1091 31448 71 2 1 chr4 66365678 66370602 -89259518 + L1Md_F2 LINE L1 563 5588 -298 4 1091 8055 54 0 5 chr4 66370603 66371604 -89258516 + L1Md_F2 LINE L1 5590 6585 0 4 1091 369 62 0 0 chr4 66371817 66371865 -89258255 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 1091 4814 144 12 31 chr4 66371876 66373097 -89257023 + L1VL2 LINE L1 1084 2276 -3607 4 1091 1204 282 36 44 chr4 66373100 66373620 -89256500 - L1_Rod LINE L1 -1534 4313 3798 4 1091 1253 149 0 43 chr4 66375252 66375483 -89254637 - Lx2 LINE L1 0 6997 6777 4 1091 1954 99 0 27 chr4 66375484 66375785 -89254335 - Lx2 LINE L1 -353 6644 6352 4 1091 777 157 0 7 chr4 66375785 66375920 -89254200 + Lx2 LINE L1 6218 6351 -646 4 1091 22 0 0 0 chr4 66376240 66376262 -89253858 + AT_rich Low_complexity Low_complexity 1 22 0 4 1091 297 336 55 0 chr4 66376298 66376408 -89253712 + Charlie12 DNA MER1_type 4 119 -2754 4 1091 25 51 0 0 chr4 66376618 66376657 -89253463 + AT_rich Low_complexity Low_complexity 1 39 0 4 1091 220 176 0 0 chr4 66377139 66377173 -89252947 + polypyrimidine Low_complexity Low_complexity 2 35 0 4 1091 211 362 71 48 chr4 66377664 66377832 -89252288 - MIR3 SINE MIR -29 179 8 5 1091 265 333 151 35 chr4 66378537 66378736 -89251384 - MIRb SINE MIR -9 259 38 5 1091 202 304 29 14 chr4 66378847 66378917 -89251203 - L2c LINE L2 -59 3328 3258 5 1091 33639 37 0 0 chr4 66379339 66384705 -89245415 + L1Md_T LINE L1 126 5589 -297 5 1091 8963 5 3 0 chr4 66384705 66385698 -89244422 + L1Md_T LINE L1 5590 6585 0 5 1091 360 0 0 0 chr4 66386045 66386085 -89244035 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1091 2090 96 15 60 chr4 66387024 66387358 -89242762 - ORR1A2 LTR MaLR -8 319 1 5 1091 331 283 138 0 chr4 66387765 66387903 -89242217 - Cheshire DNA MER1_type -2163 257 101 5 1091 577 395 81 33 chr4 66388141 66388597 -89241523 + LTR16C LTR ERVL 3 480 -9 5 1091 261 0 0 0 chr4 66389059 66389088 -89241032 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1091 1117 289 19 19 chr4 66389877 66390277 -89239843 - MTE2b LTR MaLR -10 409 11 5 1091 3517 86 0 8 chr4 66390281 66390761 -89239359 - L1Md_F2 LINE L1 -2 6580 6105 5 1091 428 184 0 10 chr4 66390930 66391029 -89239091 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1091 351 339 89 67 chr4 66391912 66392181 -89237939 - MLT1C LTR MaLR 0 467 193 5 1091 422 296 0 9 chr4 66392287 66392396 -89237724 - B1_Mur1 SINE Alu -9 140 33 5 1091 197 315 73 18 chr4 66393086 66393196 -89236924 - MIRb SINE MIR -38 230 115 5 1091 3353 68 28 0 chr4 66393219 66393643 -89236477 + RLTR10C LTR ERVK 1 436 0 5 1091 948 244 172 18 chr4 66394233 66394670 -89235450 - RCHARR1 DNA MER1_type -36 938 434 5 1091 482 317 6 85 chr4 66394671 66394830 -89235290 + RSINE1 SINE B4 4 149 -16 5 1091 1074 100 0 0 chr4 66394830 66395010 -89235110 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1091 482 317 6 85 chr4 66395010 66395026 -89235094 + RSINE1 SINE B4 150 165 0 5 1091 708 135 0 0 chr4 66395034 66395182 -89234938 + (CA)n Simple_repeat Simple_repeat 1 148 0 5 1091 766 293 42 8 chr4 66395185 66395426 -89234694 - RCHARR1 DNA MER1_type -501 473 225 5 1091 5051 204 74 10 chr4 66395935 66397810 -89232310 - Lx5 LINE L1 -8 7042 5042 5 1091 423 155 12 0 chr4 66397812 66397896 -89232224 - Lx5 LINE L1 -1218 4659 4575 5 1091 5505 147 26 221 chr4 66397894 66398108 -89232012 - Lx5 LINE L1 -3016 2861 2650 5 1091 255 31 0 0 chr4 66398108 66398140 -89231980 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1091 5505 147 26 221 chr4 66398140 66398507 -89231613 - Lx5 LINE L1 -3228 2649 2283 5 1091 2516 118 10 20 chr4 66398507 66398915 -89231205 + RLTR9E LTR ERVK 6 409 0 5 1091 5505 147 26 221 chr4 66398915 66399131 -89230989 - Lx5 LINE L1 -3228 2282 2065 5 1091 186 43 0 0 chr4 66399131 66399154 -89230966 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1091 5505 141 21 176 chr4 66399154 66400314 -89229806 - Lx5 LINE L1 -3813 2064 939 5 1091 223 49 0 47 chr4 66400320 66400363 -89229757 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 5 1091 2591 55 6 0 chr4 66400389 66400719 -89229401 - L1Md_F2 LINE L1 -2 6580 6249 5 1091 16403 101 14 13 chr4 66400720 66404566 -89225554 - L1Md_F LINE L1 -2338 3545 99 5 1091 900 236 13 23 chr4 66404589 66404889 -89225231 - L1VL1 LINE L1 -6125 297 1 5 1091 228 193 123 0 chr4 66404913 66404970 -89225150 - L1_Mur2 LINE L1 -6152 560 497 5 1091 667 97 31 39 chr4 66405006 66405135 -89224985 + Lx LINE L1 6521 6648 -6 5 1091 187 309 48 36 chr4 66405263 66405347 -89224773 + MIRc SINE MIR 82 166 -102 5 1091 872 143 0 7 chr4 66405422 66405577 -89224543 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 5 1091 308 346 79 0 chr4 66408830 66408957 -89221163 - RSINE1 SINE B4 -4 161 25 5 1091 187 362 82 44 chr4 66409469 66409628 -89220492 - MIRb SINE MIR -56 212 48 5 1091 319 287 131 11 chr4 66410684 66410860 -89219260 + L1M5 LINE L1 5649 5845 -279 5 1091 1339 219 146 6 chr4 66411583 66411905 -89218215 + ORR1B2 LTR MaLR 1 367 0 5 1091 4170 32 0 10 chr4 66412251 66412754 -89217366 + L1Md_F2 LINE L1 6085 6582 0 5 1091 236 374 26 17 chr4 66413339 66413456 -89216664 + MER58B DNA MER1_type 220 337 -4 5 1091 1200 61 0 0 chr4 66413773 66413920 -89216200 + B1_Mm SINE Alu 1 147 0 5 1091 31 0 0 0 chr4 66413920 66413951 -89216169 + AT_rich Low_complexity Low_complexity 1 31 0 5 1091 1428 161 42 105 chr4 66415216 66415569 -89214551 - RLTR23 LTR ERV1 0 430 100 5 1091 253 43 21 42 chr4 66415595 66415643 -89214477 + (TTTTTG)n Simple_repeat Simple_repeat 4 50 0 5 1091 4697 79 1 23 chr4 66415643 66416307 -89213813 + ORR1A1-int LTR MaLR 1073 1722 -70 5 1091 2213 139 36 94 chr4 66416307 66416832 -89213288 + RLTR1B LTR ERV1 1 512 0 5 1091 580 54 0 0 chr4 66416832 66416906 -89213214 + MTA_Mm-int LTR MaLR 1719 1792 0 5 1091 2637 49 61 3 chr4 66416906 66417233 -89212887 + MTA_Mm LTR MaLR 1 346 0 5 1091 7959 76 12 6 chr4 66417237 66418327 -89211793 + MTA_Mm-int LTR MaLR 3 1098 0 5 1091 3097 49 18 0 chr4 66418327 66418716 -89211404 + MTA_Mm LTR MaLR 1 396 0 5 1091 279 71 0 0 chr4 66418747 66418789 -89211331 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1091 723 80 0 10 chr4 66418798 66418899 -89211221 - RLTR23 LTR ERV1 -330 100 1 5 1091 378 310 91 37 chr4 66419046 66419585 -89210535 + L1ME1 LINE L1 5342 5909 -270 5 1091 590 288 53 39 chr4 66419663 66419789 -89210331 - MTE2b LTR MaLR 0 379 253 5 1091 2800 91 34 2 chr4 66419789 66420198 -89209922 - BGLII_Mus LTR ERVK 0 422 1 5 1091 590 288 53 39 chr4 66420198 66420277 -89209843 - MTE2b LTR MaLR -127 252 171 5 1091 192 77 0 0 chr4 66420280 66420306 -89209814 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1091 243 372 24 107 chr4 66420313 66420332 -89209788 - MTE2b LTR MaLR -191 188 172 5 1091 435 19 0 0 chr4 66420332 66420384 -89209736 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1091 243 372 24 107 chr4 66420384 66420569 -89209551 - MTE2b LTR MaLR -208 171 1 5 1091 21 0 0 0 chr4 66423639 66423660 -89206460 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 227 175 0 5 chr4 66424617 66424671 -89205449 + MIRc SINE MIR 76 128 -148 5 1091 350 330 73 39 chr4 66425338 66425543 -89204577 - L2a LINE L2 0 3426 3215 5 1091 800 238 82 111 chr4 66425701 66426141 -89203979 + RLTR12B LTR ERVK 74 500 -28 5 1091 357 86 0 0 chr4 66426420 66426478 -89203642 + (A)n Simple_repeat Simple_repeat 1 58 0 5 1091 530 290 133 22 chr4 66429123 66429349 -89200771 - MT2A LTR ERVL -2 531 281 5 1091 510 17 0 0 chr4 66431153 66431212 -89198908 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1091 266 325 29 26 chr4 66431971 66432120 -89198000 - MIRb SINE MIR 0 268 116 5 1091 231 315 144 27 chr4 66432318 66432429 -89197691 + MIRb SINE MIR 106 229 -39 5 1091 465 339 88 11 chr4 66432630 66432812 -89197308 + B4A SINE B4 40 235 -57 5 1091 646 361 77 45 chr4 66432974 66433444 -89196676 - MLT1F LTR MaLR -56 492 8 5 1091 216 186 0 0 chr4 66435244 66435303 -89194817 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 5 1091 559 324 51 15 chr4 66435395 66435668 -89194452 - B4A SINE B4 -8 284 2 5 1091 33856 51 0 3 chr4 66436119 66441785 -89188335 + L1Md_T LINE L1 1 5588 -298 5 1091 8480 33 0 0 chr4 66441786 66442782 -89187338 + L1Md_T LINE L1 5590 6585 0 5 1091 3459 289 62 18 chr4 66442833 66444087 -89186033 - RMER1A Other Other -13 1017 48 5 1091 2974 45 5 0 chr4 66444097 66444475 -89185645 + MTA_Mm LTR MaLR 1 380 -16 5 1091 637 83 10 0 chr4 66444473 66444569 -89185551 + MTA_Mm-int LTR MaLR 1002 1098 0 5 1091 3156 49 13 0 chr4 66444569 66444960 -89185160 + MTA_Mm LTR MaLR 1 396 0 5 1091 213 333 52 26 chr4 66445388 66445465 -89184655 - RSINE1 SINE B4 -70 95 17 5 1091 293 316 13 13 chr4 66445402 66445479 -89184641 - ID4_ SINE ID -5 78 2 5 1091 289 345 33 20 chr4 66446813 66446964 -89183156 - MIR SINE MIR -34 228 76 5 1091 398 304 38 69 chr4 66447418 66447577 -89182543 - MER20 DNA MER1_type -62 157 4 5 1091 206 118 0 0 chr4 66447848 66447882 -89182238 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5 1091 201 103 51 0 chr4 66449955 66449994 -89180126 + A-rich Low_complexity Low_complexity 2 42 0 5 1091 715 307 19 61 chr4 66450006 66450207 -89179913 - Lx8 LINE L1 -253 7220 7032 5 1091 4396 86 2 2 chr4 66450207 66450802 -89179318 - L1_Mus2 LINE L1 0 6566 5972 5 1091 715 307 19 61 chr4 66450802 66450912 -89179208 - Lx8 LINE L1 -442 7031 6923 5 1091 559 264 57 19 chr4 66451618 66451830 -89178290 + Helitron1Nb_Mam RC Helitron 107 326 -790 5 1091 247 343 29 29 chr4 66452532 66452637 -89177483 + Lx8 LINE L1 6304 6408 -1065 5 1091 229 217 17 0 chr4 66452804 66452864 -89177256 + A-rich Low_complexity Low_complexity 2 62 0 5 1091 188 200 17 0 chr4 66452933 66452993 -89177127 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1091 300 120 0 0 chr4 66453058 66453108 -89177012 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 5 1091 242 160 20 0 chr4 66453104 66453154 -89176966 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1091 204 135 0 0 chr4 66453154 66453191 -89176929 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1092 633 278 147 17 chr4 66454584 66454815 -89175305 + RMER15 LTR ERVL 313 573 -2 5 1092 216 135 0 0 chr4 66454895 66454932 -89175188 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5 1092 624 191 149 0 chr4 66454937 66455078 -89175042 - Lx3B LINE L1 -4 6969 6808 5 1092 350 245 31 41 chr4 66455243 66455341 -89174779 + MLT1A1 LTR MaLR 300 396 -12 5 1092 21 71 0 0 chr4 66455857 66455899 -89174221 + AT_rich Low_complexity Low_complexity 1 42 0 5 1092 2777 66 16 16 chr4 66456167 66456188 -89173932 + MTB LTR MaLR 1 18 -382 5 1092 3362 28 10 0 chr4 66456188 66456580 -89173540 - MTA_Mm LTR MaLR 0 396 1 5 1092 2777 66 16 16 chr4 66456580 66456945 -89173175 + MTB LTR MaLR 19 387 -13 5 1092 23 33 0 0 chr4 66458011 66458041 -89172079 + AT_rich Low_complexity Low_complexity 1 30 0 5 1092 29 47 0 0 chr4 66458216 66458259 -89171861 + AT_rich Low_complexity Low_complexity 1 43 0 5 1092 3913 132 37 27 chr4 66458272 66458941 -89171179 - Lx LINE L1 -7 6647 5972 5 1092 5120 125 32 0 chr4 66458941 66459765 -89170355 + MusHAL1 LINE L1 901 1750 -962 5 1092 4529 128 33 23 chr4 66459771 66460506 -89169614 - Lx3C LINE L1 -7 6969 6228 5 1092 237 306 11 23 chr4 66461313 66461400 -89168720 + Charlie24 DNA MER1_type 2331 2416 -34 5 1092 1691 239 21 29 chr4 66462039 66462414 -89167706 + ORR1D1 LTR MaLR 1 372 -2 5 1092 481 318 170 0 chr4 66462647 66462932 -89167188 - MLT2D LTR ERVL -83 331 1 5 1092 191 293 84 12 chr4 66463278 66463361 -89166759 + MIR SINE MIR 42 130 -132 5 1092 534 264 73 36 chr4 66463987 66464152 -89165968 + Lx9 LINE L1 6406 6576 -1068 6 1092 655 260 8 0 chr4 66464316 66464443 -89165677 - B1F SINE Alu -8 141 14 6 1092 565 290 87 26 chr4 66464588 66464818 -89165302 - Lx8 LINE L1 -1 7472 7229 6 1092 3514 162 89 9 chr4 66464818 66465511 -89164609 + RMER12 LTR ERVK 1 749 -573 6 1092 670 85 0 33 chr4 66465533 66465655 -89164465 + (TCCA)n Simple_repeat Simple_repeat 1 118 0 6 1092 1112 253 93 35 chr4 66465674 66466018 -89164102 + RMER12 LTR ERVK 958 1321 -1 6 1092 1283 160 0 4 chr4 66466037 66466269 -89163851 - Lx2 LINE L1 0 6997 6767 6 1092 730 110 0 0 chr4 66466269 66466378 -89163742 - Lx2 LINE L1 -347 6307 6199 6 1092 385 313 0 0 chr4 66466374 66466473 -89163647 - Lx8 LINE L1 -262 7211 7113 6 1092 1887 176 8 90 chr4 66466482 66466881 -89163239 + ORR1B1 LTR MaLR 20 385 -9 6 1092 372 350 35 0 chr4 66466937 66467080 -89163040 + Lx8 LINE L1 6916 7063 -410 6 1092 3294 160 21 2 chr4 66467474 66468057 -89162063 + L1_Mm LINE L1 4820 5413 -470 6 1092 24 0 0 0 chr4 66468178 66468202 -89161918 + AT_rich Low_complexity Low_complexity 1 24 0 6 1092 310 259 64 18 chr4 66468246 66468356 -89161764 + L1MB5 LINE L1 5762 5876 -298 6 1092 317 363 52 81 chr4 66470168 66470378 -89159742 + ID_B1 SINE B4 20 223 -1 6 1092 594 0 0 0 chr4 66470378 66470444 -89159676 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1092 777 22 0 0 chr4 66470444 66470535 -89159585 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 6 1092 28 0 0 0 chr4 66470823 66470851 -89159269 + AT_rich Low_complexity Low_complexity 1 28 0 6 1092 4060 232 62 15 chr4 66470852 66471714 -89158406 - Lx5 LINE L1 -17 7033 6132 6 1092 669 25 0 0 chr4 66472418 66472497 -89157623 + (TAAAA)n Simple_repeat Simple_repeat 2 80 0 6 1092 582 15 0 0 chr4 66472660 66472727 -89157393 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1092 819 219 63 19 chr4 66474126 66474331 -89155789 - B3 SINE B2 -1 215 2 6 1092 249 146 0 0 chr4 66474659 66474707 -89155413 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1092 204 321 38 0 chr4 66475440 66475493 -89154627 - MIRb SINE MIR -195 73 19 6 1092 224 324 87 27 chr4 66476044 66476193 -89153927 - MIR SINE MIR -1 261 104 6 1092 1148 68 0 0 chr4 66476386 66476532 -89153588 - B1_Mm SINE Alu 0 147 2 6 1092 497 0 48 0 chr4 66477071 66477134 -89152986 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 6 1092 1778 128 23 78 chr4 66477394 66477741 -89152379 - ORR1A4 LTR MaLR 0 329 2 6 1092 995 147 6 0 chr4 66478776 66478953 -89151167 + CT-rich Low_complexity Low_complexity 2 179 0 6 1092 22 0 0 0 chr4 66479799 66479821 -89150299 + AT_rich Low_complexity Low_complexity 1 22 0 6 1092 22 0 0 0 chr4 66479925 66479947 -89150173 + AT_rich Low_complexity Low_complexity 1 22 0 6 1092 571 327 60 0 chr4 66479962 66480130 -89149990 - ID_B1 SINE B4 -42 182 5 6 1092 21 0 0 0 chr4 66480393 66480414 -89149706 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 306 194 0 0 chr4 66480980 66481052 -89149068 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1092 275 0 0 28 chr4 66481607 66481643 -89148477 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1092 1226 55 0 0 chr4 66481646 66481792 -89148328 - B1_Mm SINE Alu 0 147 2 6 1092 193 400 34 25 chr4 66483282 66483400 -89146720 - L2b LINE L2 -13 3362 3244 6 1092 291 336 39 31 chr4 66484000 66484129 -89145991 - MER104 DNA Tc2 -9 172 43 6 1092 228 154 0 0 chr4 66484360 66484412 -89145708 + CT-rich Low_complexity Low_complexity 1 52 0 6 1092 513 0 0 0 chr4 66484430 66484487 -89145633 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1092 3336 59 0 5 chr4 66485510 66485935 -89144185 - L1Md_F2 LINE L1 0 6582 6160 6 1092 275 312 147 8 chr4 66486306 66486435 -89143685 - B4A SINE B4 -6 286 140 6 1092 747 266 38 19 chr4 66486788 66486999 -89143121 - B3 SINE B2 0 216 2 6 1092 276 241 12 12 chr4 66487677 66487757 -89142363 + MLT1B LTR MaLR 93 172 -218 6 1092 218 278 96 14 chr4 66487760 66487833 -89142287 + ID SINE ID 1 79 -145 6 1092 404 274 30 68 chr4 66487915 66488048 -89142072 + B4A SINE B4 104 231 -61 6 1092 540 0 0 0 chr4 66488218 66488278 -89141842 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1092 353 356 18 24 chr4 66488306 66488470 -89141650 + MLT1B LTR MaLR 224 386 -4 6 1092 237 312 52 0 chr4 66489193 66489289 -89140831 + MIRc SINE MIR 32 132 -136 6 1092 485 333 0 44 chr4 66489465 66489625 -89140495 + RSINE1 SINE B4 13 165 0 6 1092 1224 273 15 128 chr4 66490678 66490826 -89139294 - RLTR17 LTR ERVK -96 596 467 6 1092 1782 64 47 0 chr4 66490826 66491061 -89139059 - L1_Mus1 LINE L1 0 6567 6322 6 1092 1224 273 15 128 chr4 66491061 66491210 -89138910 - RLTR17 LTR ERVK -226 466 319 6 1092 818 79 0 8 chr4 66491210 66491337 -89138783 - L1_Mus2 LINE L1 0 6566 6441 6 1092 1224 273 15 128 chr4 66491337 66491376 -89138744 - RLTR17 LTR ERVK -374 318 297 6 1092 988 169 0 30 chr4 66491376 66491577 -89138543 + Lx2 LINE L1 6800 6994 -3 6 1092 1224 273 15 128 chr4 66491577 66491785 -89138335 - RLTR17 LTR ERVK -396 296 112 6 1092 1089 233 14 0 chr4 66492190 66492413 -89137707 - URR1A DNA MER1_type 0 226 1 6 1092 289 289 24 12 chr4 66492840 66492924 -89137196 - L2a LINE L2 0 3426 3342 6 1092 1160 212 131 3 chr4 66493841 66494154 -89135966 - Lx9 LINE L1 -288 7356 7004 6 1092 1026 203 75 21 chr4 66494154 66494436 -89135684 + Lx9 LINE L1 7344 7640 -4 6 1092 1126 290 121 54 chr4 66496168 66496831 -89133289 - Lx8 LINE L1 -305 7168 6462 6 1092 7349 107 9 1 chr4 66497580 66498909 -89131211 - L1_Mus3 LINE L1 -15 6623 5285 6 1092 200 182 35 35 chr4 66502944 66503001 -89127119 + T-rich Low_complexity Low_complexity 5 61 0 1 1092 182 37 37 0 chr4 66503630 66503657 -89126463 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1092 455 306 68 11 chr4 66503717 66504059 -89126061 + L1MB1 LINE L1 5531 5900 -391 3 1092 193 109 21 21 chr4 66504667 66504714 -89125406 + GA-rich Low_complexity Low_complexity 2 48 0 4 1092 21 0 0 0 chr4 66508268 66508289 -89121831 + AT_rich Low_complexity Low_complexity 1 21 0 5 1092 522 0 0 0 chr4 66508514 66508572 -89121548 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 6 1092 1437 177 84 32 chr4 66509629 66509974 -89120146 + Lx4B LINE L1 6088 6450 -608 7 1092 1498 211 6 34 chr4 66509977 66510335 -89119785 + Lx4B LINE L1 6706 7053 -5 7 1092 892 129 49 22 chr4 66511753 66511923 -89118197 + B1_Mus2 SINE Alu 25 311 0 8 1092 288 77 0 0 chr4 66512530 66512569 -89117551 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1092 5035 66 2 0 chr4 66514109 66514747 -89115373 - L1Md_F2 LINE L1 0 6582 5944 1 1092 295 312 44 35 chr4 66514753 66514866 -89115254 - MIRb SINE MIR -56 212 99 1 1092 229 273 28 35 chr4 66515171 66515315 -89114805 + L1MA4 LINE L1 5021 5163 -980 1 1092 290 276 101 12 chr4 66515371 66515540 -89114580 + L1MA4 LINE L1 5304 5487 -810 1 1092 541 92 0 0 chr4 66515769 66515845 -89114275 + MTB LTR MaLR 1 76 -331 1 1092 1649 77 5 0 chr4 66515844 66516065 -89114055 + MTB LTR MaLR 179 400 0 1 1092 651 292 15 1 chr4 66516066 66516332 -89113788 + L1MA4 LINE L1 5670 5940 -357 1 1092 965 72 0 0 chr4 66516466 66516591 -89113529 + B1_Mus2 SINE Alu 1 125 -22 1 1092 280 318 0 0 chr4 66518231 66518297 -89111823 + MTEa LTR MaLR 224 289 -90 1 1092 272 284 152 42 chr4 66519079 66519270 -89110850 + MIR SINE MIR 49 260 -2 1 1092 532 341 64 0 chr4 66520680 66520900 -89109220 - MIR SINE MIR -8 254 21 1 1092 273 274 123 22 chr4 66521208 66521346 -89108774 - MER63C DNA AcHobo -497 433 282 1 1092 29 28 0 0 chr4 66521405 66521441 -89108679 + AT_rich Low_complexity Low_complexity 1 36 0 1 1092 446 341 16 43 chr4 66521443 66521630 -89108490 - B3A SINE B2 -16 182 1 2 1092 607 349 62 26 chr4 66521808 66522117 -89108003 + MTEa LTR MaLR 1 320 -59 2 1092 180 77 0 0 chr4 66523172 66523198 -89106922 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1092 5862 234 68 90 chr4 66524614 66525726 -89104394 - Lx7 LINE L1 0 7696 6580 2 1092 360 0 0 0 chr4 66525726 66525766 -89104354 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1092 2207 146 39 34 chr4 66525766 66526177 -89103943 - Lx2 LINE L1 -6 6991 6579 2 1092 5862 234 68 90 chr4 66526177 66526642 -89103478 - Lx7 LINE L1 -1117 6579 6184 2 1092 360 0 0 0 chr4 66526642 66526682 -89103438 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1092 5862 234 68 90 chr4 66526682 66527086 -89103034 - Lx7 LINE L1 -1513 6183 5752 2 1092 4973 175 21 17 chr4 66527086 66527988 -89102132 - RMER13B LTR ERVK 0 908 3 2 1092 5862 214 44 41 chr4 66527988 66528660 -89101460 - Lx7 LINE L1 -1945 5751 5064 2 1092 1522 0 10 0 chr4 66530330 66530535 -89099585 + (TTC)n Simple_repeat Simple_repeat 1 206 0 2 1092 243 0 0 0 chr4 66531600 66531627 -89098493 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1092 198 103 0 0 chr4 66533115 66533144 -89096976 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 3 1092 337 310 79 22 chr4 66533649 66533750 -89096370 - MER58B DNA MER1_type -2 339 239 3 1092 477 0 0 0 chr4 66533750 66533803 -89096317 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1092 337 310 79 22 chr4 66533803 66533879 -89096241 - MER58B DNA MER1_type -103 238 153 3 1092 405 0 0 0 chr4 66534597 66534642 -89095478 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1092 491 250 142 21 chr4 66535589 66535677 -89094443 + Lx7 LINE L1 7436 7533 -163 3 1092 459 0 0 0 chr4 66535677 66535728 -89094392 + (CCTAG)n Simple_repeat Simple_repeat 5 55 0 3 1092 491 250 142 21 chr4 66535728 66535872 -89094248 + Lx7 LINE L1 7534 7695 -1 3 1092 339 130 0 0 chr4 66535876 66535930 -89094190 + (GGA)n Simple_repeat Simple_repeat 2 55 0 3 1092 479 195 14 84 chr4 66536059 66536258 -89093862 + RMER17C LTR ERVK 90 273 -137 3 1092 227 31 31 0 chr4 66536258 66536290 -89093830 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 3 1092 479 195 14 84 chr4 66536290 66536303 -89093817 + RMER17C LTR ERVK 274 287 -123 3 1092 1160 308 34 26 chr4 66536444 66536911 -89093209 - RMER5 LTR ERV1 -11 523 53 3 1092 188 337 87 0 chr4 66536953 66537045 -89093075 + MIR SINE MIR 36 135 -127 4 1092 450 124 0 0 chr4 66537186 66537275 -89092845 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 1092 583 262 77 12 chr4 66537283 66537453 -89092667 - B3A SINE B2 -16 182 2 4 1092 223 310 22 22 chr4 66538036 66538125 -89091995 + MIRb SINE MIR 60 148 -120 4 1092 338 247 12 12 chr4 66539656 66539738 -89090382 - ID_B1 SINE B4 0 224 143 4 1092 247 287 61 41 chr4 66539738 66539753 -89090367 - B1_Mur4 SINE Alu 0 149 51 4 1092 4159 116 0 0 chr4 66540156 66540740 -89089380 + MT2B2 LTR ERVL 1 584 0 4 1092 249 33 0 0 chr4 66542162 66542192 -89087928 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 4 1092 632 355 9 5 chr4 66542196 66542417 -89087703 + B4 SINE B4 2 223 -69 4 1092 477 226 57 0 chr4 66542435 66542541 -89087579 + PB1D9 SINE Alu 9 120 0 4 1092 835 157 0 23 chr4 66545356 66545532 -89084588 + CT-rich Low_complexity Low_complexity 2 173 0 5 1092 670 302 63 28 chr4 66545652 66545907 -89084213 + ORR1D2 LTR MaLR 1 264 -106 5 1092 215 31 31 0 chr4 66545950 66545982 -89084138 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1092 382 288 122 46 chr4 66546377 66546508 -89083612 - RSINE1 SINE B4 -22 143 3 5 1092 414 363 36 0 chr4 66546754 66546922 -89083198 + MIRb SINE MIR 75 248 -20 5 1092 396 0 0 0 chr4 66547078 66547122 -89082998 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1092 3625 42 2 7 chr4 66547271 66547723 -89082397 + L1Md_F2 LINE L1 6131 6580 -2 5 1092 185 327 0 18 chr4 66548315 66548371 -89081749 - MIRb SINE MIR -13 255 201 5 1092 742 310 20 5 chr4 66548570 66548771 -89081349 - B3 SINE B2 0 216 13 5 1092 208 262 10 10 chr4 66549514 66549618 -89080502 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 5 1092 209 297 0 0 chr4 66549648 66549712 -89080408 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1092 220 245 0 39 chr4 66550250 66550352 -89079768 + (CATATA)n Simple_repeat Simple_repeat 6 103 0 6 1092 349 327 26 8 chr4 66552922 66553089 -89077031 + MLT1H1 LTR MaLR 3 167 -388 6 1092 3092 101 47 53 chr4 66553810 66554303 -89075817 - L1_Mus4 LINE L1 0 6636 6147 6 1092 1714 147 151 52 chr4 66554310 66554758 -89075362 - L1_Mus4 LINE L1 -2 6634 6146 6 1092 309 141 0 0 chr4 66555284 66555355 -89074765 + (T)n Simple_repeat Simple_repeat 1 71 0 6 1092 180 0 0 0 chr4 66555679 66555699 -89074421 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1092 581 270 56 19 chr4 66556470 66556685 -89073435 - Lx8 LINE L1 -857 6616 6394 6 1092 240 132 35 70 chr4 66557322 66557379 -89072741 + MER5A1 DNA MER1_type 52 106 -60 6 1092 388 266 0 0 chr4 66557422 66557501 -89072619 + B4A SINE B4 1 79 -213 6 1092 893 134 0 32 chr4 66557561 66557746 -89072374 + CT-rich Low_complexity Low_complexity 2 180 0 6 1092 495 0 0 0 chr4 66557746 66557801 -89072319 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 7 1092 2342 60 3 13 chr4 66558226 66558544 -89071576 - L1_Mus1 LINE L1 -140 6427 6113 7 1092 3205 67 0 0 chr4 66558540 66558972 -89071148 + L1_Mus1 LINE L1 5664 6095 -472 7 1092 886 163 0 17 chr4 66559140 66559321 -89070799 + CT-rich Low_complexity Low_complexity 3 180 0 7 1092 1090 53 29 23 chr4 66559324 66559499 -89070621 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 7 1092 438 338 66 44 chr4 66559660 66559905 -89070215 + MT2A LTR ERVL 258 539 -15 7 1092 194 221 0 29 chr4 66560046 66560116 -89070004 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 7 1092 297 128 0 0 chr4 66560116 66560163 -89069957 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1092 222 150 0 0 chr4 66560368 66560408 -89069712 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1092 952 164 34 23 chr4 66561257 66561432 -89068688 + RLTR41 LTR ERV1 1 177 -269 7 1092 609 160 14 71 chr4 66561406 66561547 -89068573 - B2_Mm1a SINE B2 -59 134 2 7 1092 216 103 26 0 chr4 66561571 66561610 -89068510 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 1092 1016 123 0 0 chr4 66561611 66561757 -89068363 - B1_Mus1 SINE Alu 0 148 3 8 1092 31 0 0 0 chr4 66561757 66561788 -89068332 + AT_rich Low_complexity Low_complexity 1 31 0 8 1092 232 314 124 0 chr4 66562305 66562410 -89067710 - MER117 DNA MER1_type -42 155 38 8 1092 408 71 0 0 chr4 66562505 66562561 -89067559 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 8 1092 4082 65 44 9 chr4 66563089 66563630 -89066490 + LTRIS2 LTR ERV1 5 564 0 8 1092 613 107 0 2 chr4 66563846 66563950 -89066170 + RLTR1B-int LTR ERV1 139 288 -3011 8 1092 769 152 74 68 chr4 66564301 66564491 -89065629 + RMER16-int LTR ERVK 141 331 -5075 8 1092 4094 132 61 17 chr4 66564477 66565200 -89064920 + RMER16-int LTR ERVK 690 1444 -3962 8 1092 8622 142 71 51 chr4 66565191 66567459 -89062661 + RLTR1B-int LTR ERV1 760 2555 -744 8 1092 1087 206 63 11 chr4 66567446 66567834 -89062286 + RLTR1B-int LTR ERV1 2669 2813 -486 8 1092 856 204 45 13 chr4 66567951 66568175 -89061945 + RLTR1B-int LTR ERV1 4791 5021 -42 8 1092 4082 65 44 9 chr4 66568178 66568719 -89061401 + LTRIS2 LTR ERV1 5 564 0 8 1092 232 382 49 5 chr4 66568757 66568941 -89061179 - MIR SINE MIR -43 219 28 8 1092 4492 51 13 4 chr4 66570136 66570691 -89059429 + LTRIS2 LTR ERV1 5 564 0 9 1092 1725 42 0 0 chr4 66570977 66571193 -89058927 + L1Md_F2 LINE L1 5370 5585 -298 9 1092 7871 52 7 5 chr4 66571194 66572176 -89057944 + L1Md_F2 LINE L1 5587 6570 -12 9 1092 294 271 106 0 chr4 66572720 66572805 -89057315 - RMER10A LTR ERVL -28 414 321 9 1092 450 0 0 0 chr4 66573105 66573155 -89056965 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1092 315 0 0 0 chr4 66573467 66573502 -89056618 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1092 244 221 17 26 chr4 66574173 66574289 -89055831 + CT-rich Low_complexity Low_complexity 3 117 0 9 1092 375 113 0 0 chr4 66574579 66574641 -89055479 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1092 1473 261 79 3 chr4 66574822 66575203 -89054917 - MTD LTR MaLR 0 419 10 9 1092 423 0 0 0 chr4 66575411 66575458 -89054662 + (TATG)n Simple_repeat Simple_repeat 2 48 0 9 1092 297 241 37 37 chr4 66576655 66576737 -89053383 + MLT1G LTR MaLR 263 344 -247 9 1092 3681 56 28 0 chr4 66577070 66577533 -89052587 - L1_Mus1 LINE L1 -2 6565 6090 1 1092 494 316 29 5 chr4 66577980 66578187 -89051933 - B3 SINE B2 0 216 5 1 1092 297 0 0 0 chr4 66579031 66579064 -89051056 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 1092 415 329 29 0 chr4 66579144 66579281 -89050839 - B3 SINE B2 -38 160 11 1 1092 373 303 11 0 chr4 66579284 66579373 -89050747 + B3 SINE B2 117 206 -10 1 1092 399 119 0 0 chr4 66580397 66580464 -89049656 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1092 417 20 0 0 chr4 66580536 66580586 -89049534 + (TGG)n Simple_repeat Simple_repeat 2 51 0 1 1092 231 61 0 0 chr4 66581629 66581662 -89048458 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1092 443 298 54 116 chr4 66581757 66582015 -89048105 + ORR1D1 LTR MaLR 9 250 -124 1 1092 1841 173 18 3 chr4 66582183 66582525 -89047595 - RLTR15 LTR ERVK -12 347 1 1 1093 249 33 0 0 chr4 66584762 66584792 -89045328 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1093 183 42 0 0 chr4 66585941 66585965 -89044155 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1093 242 212 34 34 chr4 66587580 66587668 -89042452 + L1M4 LINE L1 5624 5711 -467 1 1093 477 0 0 0 chr4 66587885 66587938 -89042182 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1093 214 353 44 0 chr4 66587980 66588048 -89042072 - AluF_3 SINE Alu -100 211 141 1 1093 554 301 32 37 chr4 66589975 66590192 -89039928 - B3 SINE B2 0 216 1 1 1093 305 292 22 22 chr4 66590382 66590473 -89039647 - LTR90A LTR LTR -13 963 873 1 1093 834 279 101 78 chr4 66590889 66591037 -89039083 + MTD LTR MaLR 1 131 -288 1 1093 402 21 0 0 chr4 66591037 66591084 -89039036 + (TAG)n Simple_repeat Simple_repeat 1 47 0 1 1093 834 247 87 87 chr4 66591084 66591339 -89038781 + MTD LTR MaLR 132 405 -14 1 1093 461 298 31 16 chr4 66592089 66592386 -89037734 - L1MA4 LINE L1 -186 6003 5708 1 1093 32 75 0 0 chr4 66592386 66592453 -89037667 + AT_rich Low_complexity Low_complexity 1 67 0 1 1093 279 0 0 0 chr4 66592529 66592560 -89037560 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1 1093 219 312 0 0 chr4 66592560 66592637 -89037483 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1093 304 273 45 74 chr4 66592719 66592878 -89037242 - L1MA4 LINE L1 -793 5519 5362 1 1093 733 53 44 0 chr4 66592878 66592991 -89037129 - L1_Mus3 LINE L1 -3 6635 6518 1 1093 287 273 45 74 chr4 66592991 66593034 -89037086 - L1MA4 LINE L1 -810 5361 5323 1 1093 531 0 0 0 chr4 66593083 66593142 -89036978 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1093 282 308 40 36 chr4 66593206 66593428 -89036692 - L1MA4 LINE L1 -992 5148 4926 1 1093 454 281 107 31 chr4 66593428 66593669 -89036451 - MTEb LTR MaLR -4 375 100 1 1093 423 287 92 45 chr4 66593813 66594258 -89035862 - L1MA4 LINE L1 -1204 4936 4471 1 1093 222 245 0 20 chr4 66594641 66594691 -89035429 + L3 LINE CR1 38 86 -4403 1 1093 232 339 0 0 chr4 66594719 66594781 -89035339 - ID4_ SINE ID -17 66 5 1 1093 290 292 44 70 chr4 66594785 66594899 -89035221 - PB1D10 SINE Alu -1 116 6 1 1093 875 291 114 19 chr4 66595202 66595465 -89034655 + MTE2b LTR MaLR 91 378 -1 1 1093 788 312 85 44 chr4 66596502 66596844 -89033276 - ORR1E LTR MaLR 0 359 4 1 1093 343 309 60 0 chr4 66596922 66597155 -89032965 + L1ME1 LINE L1 5595 5841 -338 1 1093 3413 134 2 7 chr4 66597848 66598410 -89031710 - Lx2B LINE L1 -233 6767 6209 1 1093 833 172 82 22 chr4 66598388 66598572 -89031548 + Lx2B LINE L1 6803 6997 -3 1 1093 311 352 28 9 chr4 66601391 66601500 -89028620 - L2b LINE L2 0 3375 3265 1 1093 575 156 0 8 chr4 66602380 66602503 -89027617 + GA-rich Low_complexity Low_complexity 1 122 0 1 1093 261 333 18 64 chr4 66603558 66603667 -89026453 - MIRb SINE MIR -159 109 6 1 1093 1113 84 0 0 chr4 66603851 66603993 -89026127 + B1_Mus1 SINE Alu 2 143 -5 1 1093 887 121 13 0 chr4 66604398 66604555 -89025565 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 1 1093 683 163 7 7 chr4 66604560 66604696 -89025424 - Lx3C LINE L1 -5 6971 6836 1 1093 203 214 24 0 chr4 66604963 66605005 -89025115 - MIRc SINE MIR -109 159 117 1 1093 408 370 55 0 chr4 66605196 66605396 -89024724 + MLT1I LTR MaLR 107 317 -94 1 1093 1693 177 3 10 chr4 66605646 66605959 -89024161 - Lx2 LINE L1 -1 6996 6686 1 1093 3102 207 41 28 chr4 66605961 66606770 -89023350 + Lx2B LINE L1 6182 7000 0 1 1093 287 222 12 0 chr4 66607711 66607792 -89022328 + CT-rich Low_complexity Low_complexity 3 84 0 1 1093 1115 347 22 17 chr4 66607858 66608459 -89021661 + Lx8 LINE L1 6574 7177 -296 1 1093 567 53 0 0 chr4 66608610 66608685 -89021435 + (GAAAA)n Simple_repeat Simple_repeat 2 76 0 1 1093 302 264 44 16 chr4 66608968 66609088 -89021032 + MIRb SINE MIR 3 130 -138 1 1093 544 270 110 31 chr4 66609318 66609509 -89020611 + MER58C DNA MER1_type 1 206 -9 1 1093 257 349 120 16 chr4 66609626 66609818 -89020302 + L2 LINE L2 2854 3065 -354 1 1093 244 200 0 0 chr4 66610757 66610807 -89019313 + (TCTCTG)n Simple_repeat Simple_repeat 5 54 0 1 1093 636 14 0 0 chr4 66610807 66610880 -89019240 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1 1093 9865 50 2 3 chr4 66610944 66612851 -89017269 - L1Md_F2 LINE L1 -3 6579 4675 1 1093 212 296 56 0 chr4 66612853 66612907 -89017213 - B1F2 SINE Alu -65 84 28 1 1093 1638 184 157 3 chr4 66612940 66613278 -89016842 - ORR1B1 LTR MaLR -4 390 1 1 1093 26 0 0 0 chr4 66614328 66614354 -89015766 + AT_rich Low_complexity Low_complexity 1 26 0 1 1093 366 23 0 0 chr4 66614657 66614700 -89015420 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1093 201 39 0 0 chr4 66614858 66614884 -89015236 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1093 221 167 0 0 chr4 66615109 66615151 -89014969 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1093 411 132 0 0 chr4 66616975 66617043 -89013077 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1093 280 57 36 36 chr4 66617044 66617099 -89013021 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 1 1093 433 79 0 0 chr4 66617216 66617279 -89012841 + L1_Mus2 LINE L1 6504 6566 0 1 1093 200 283 64 28 chr4 66617396 66617505 -89012615 + MIRc SINE MIR 129 241 -27 1 1093 210 394 23 8 chr4 66618113 66618246 -89011874 + MIRb SINE MIR 36 170 -98 1 1093 395 253 23 0 chr4 66618436 66618523 -89011597 + ORR1D1 LTR MaLR 5 93 -281 1 1093 1342 242 52 21 chr4 66618536 66618865 -89011255 + ORR1D1 LTR MaLR 36 374 0 1 1093 1014 318 49 9 chr4 66618865 66619211 -89010909 + Lx7 LINE L1 6798 7157 -539 1 1093 1038 39 0 0 chr4 66619377 66619504 -89010616 + (TTCC)n Simple_repeat Simple_repeat 4 130 0 1 1093 307 250 35 70 chr4 66619520 66619662 -89010458 + L1ME5 LINE L1 6028 6164 -30 1 1093 420 329 23 40 chr4 66619667 66619841 -89010279 + MER58A DNA MER1_type 1 171 -53 1 1093 534 16 0 0 chr4 66619898 66619961 -89010159 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 1 1093 23 33 0 0 chr4 66620253 66620283 -89009837 + AT_rich Low_complexity Low_complexity 1 30 0 1 1093 180 176 0 0 chr4 66620509 66620543 -89009577 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 1093 307 239 137 10 chr4 66620567 66620718 -89009402 - L1MA4 LINE L1 -371 5929 5763 1 1093 507 161 0 0 chr4 66620718 66620855 -89009265 + (TA)n Simple_repeat Simple_repeat 2 138 0 1 1093 1558 182 219 47 chr4 66620960 66621486 -89008634 - RMER6C LTR ERVK 0 690 4 1 1093 226 257 89 58 chr4 66623129 66623227 -89006893 + MIRb SINE MIR 81 179 -89 1 1093 1188 284 31 23 chr4 66623227 66623580 -89006540 + MTEb LTR MaLR 3 358 -21 1 1093 764 63 9 0 chr4 66625284 66625395 -89004725 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 1 1093 496 336 7 13 chr4 66625439 66625593 -89004527 + B4A SINE B4 127 279 -13 1 1093 288 233 0 0 chr4 66625945 66626018 -89004102 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1093 38470 8 0 1 chr4 66626726 66632708 -88997412 + L1Md_A LINE L1 1 5586 -297 1 1093 9006 1 0 1 chr4 66632708 66633704 -88996416 + L1Md_A LINE L1 5587 6581 -1 1 1093 843 145 0 0 chr4 66634397 66634569 -88995551 + (GGAA)n Simple_repeat Simple_repeat 3 174 0 1 1093 344 271 120 9 chr4 66635682 66635790 -88994330 - MIR SINE MIR -70 138 19 1 1093 333 0 0 0 chr4 66636657 66636694 -88993426 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1093 904 296 64 57 chr4 66636741 66637254 -88992866 - Lx9 LINE L1 -50 7594 7078 1 1093 183 129 0 0 chr4 66637369 66637400 -88992720 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1093 405 228 56 106 chr4 66638448 66638590 -88991530 + MER5A DNA MER1_type 47 181 -8 1 1093 519 17 0 0 chr4 66638762 66638822 -88991298 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1093 542 316 38 13 chr4 66638826 66638983 -88991137 - B3A SINE B2 -34 164 4 1 1093 239 173 19 0 chr4 66639732 66639784 -88990336 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1093 23 0 0 0 chr4 66639918 66639941 -88990179 + AT_rich Low_complexity Low_complexity 1 23 0 1 1093 25 0 0 0 chr4 66640990 66641015 -88989105 + AT_rich Low_complexity Low_complexity 1 25 0 1 1093 255 333 17 8 chr4 66641054 66641172 -88988948 + MER110-int LTR ERV1 4302 4420 -227 1 1093 585 281 126 27 chr4 66641653 66641876 -88988244 + MT2B LTR ERVL 276 520 -81 1 1093 245 203 51 0 chr4 66641890 66641975 -88988145 + (TATG)n Simple_repeat Simple_repeat 1 89 0 1 1093 1199 171 43 0 chr4 66642006 66642217 -88987903 + URR1A DNA MER1_type 7 226 0 1 1093 1071 301 48 93 chr4 66643253 66643999 -88986121 - RMER19B LTR ERVK 0 902 4 1 1093 35 24 0 0 chr4 66644648 66644690 -88985430 + AT_rich Low_complexity Low_complexity 1 42 0 1 1093 717 344 31 25 chr4 66644976 66645262 -88984858 - MLT1A0 LTR MaLR -44 321 34 1 1093 2855 43 0 3 chr4 66645276 66645622 -88984498 - IAPLTR4 LTR ERVK 0 345 1 1 1093 253 378 13 57 chr4 66645973 66646203 -88983917 + L1MEd LINE L1 413 632 -5487 2 1093 477 0 0 0 chr4 66646557 66646610 -88983510 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1093 349 312 57 65 chr4 66646620 66646850 -88983270 - RMER15 LTR ERVL -71 504 277 2 1093 2228 219 191 30 chr4 66646945 66647618 -88982502 + RLTR40 LTR ERVK 1 782 -35 2 1093 234 150 0 0 chr4 66647790 66647830 -88982290 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 2 1093 464 32 0 16 chr4 66647830 66647893 -88982227 + (CAAGG)n Simple_repeat Simple_repeat 2 63 0 2 1093 24 32 0 0 chr4 66648019 66648050 -88982070 + AT_rich Low_complexity Low_complexity 1 31 0 2 1093 185 304 0 0 chr4 66648335 66648381 -88981739 - MIR SINE MIR -71 137 92 2 1093 693 24 0 0 chr4 66649828 66649911 -88980209 + (CCA)n Simple_repeat Simple_repeat 3 85 0 2 1093 381 22 0 0 chr4 66650465 66650511 -88979609 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 2 1093 1154 51 0 0 chr4 66650512 66650649 -88979471 - B1_Mm SINE Alu -10 137 1 2 1093 28 0 0 0 chr4 66650726 66650754 -88979366 + AT_rich Low_complexity Low_complexity 1 28 0 2 1093 414 211 0 84 chr4 66651412 66651531 -88978589 - Lx9 LINE L1 -2 7642 7534 2 1093 480 62 0 0 chr4 66651900 66651964 -88978156 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1093 321 26 0 0 chr4 66651968 66652006 -88978114 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1093 365 0 22 0 chr4 66652006 66652050 -88978070 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1093 699 374 12 38 chr4 66653213 66653552 -88976568 - MER2 DNA MER2_type -7 338 9 2 1093 488 219 92 79 chr4 66654831 66655003 -88975117 + RMER19B LTR ERVK 342 487 -415 2 1093 826 244 112 45 chr4 66654995 66655282 -88974838 + RMER19C LTR ERVK 306 611 0 2 1093 29 60 0 0 chr4 66655986 66656036 -88974084 + AT_rich Low_complexity Low_complexity 1 50 0 2 1093 210 208 42 0 chr4 66656063 66656111 -88974009 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2 1093 218 351 18 67 chr4 66656848 66657013 -88973107 - MIRc SINE MIR -4 264 108 2 1093 680 214 20 7 chr4 66658984 66659130 -88970990 - B1_Mur4 SINE Alu -1 149 2 2 1093 1117 239 107 16 chr4 66660163 66660482 -88969638 - ORR1D1 LTR MaLR -4 370 23 2 1093 1412 201 8 0 chr4 66660482 66660750 -88969370 + Lx4B LINE L1 6326 6595 -463 2 1093 2441 198 46 49 chr4 66660753 66661322 -88968798 + Lx5 LINE L1 6484 7050 0 2 1093 409 319 88 19 chr4 66663237 66663491 -88966629 - RMER20B LTR ERVK -277 350 90 2 1093 359 370 65 0 chr4 66663775 66663929 -88966191 - MER45A DNA Tip100 -14 164 1 2 1093 1086 217 11 25 chr4 66663929 66664212 -88965908 + RMER3D-int LTR ERVK 2559 2837 -5 2 1093 1444 198 5 68 chr4 66664215 66664584 -88965536 + RLTR31_Mur LTR ERVK 1 346 -207 2 1093 459 78 0 0 chr4 66664666 66664730 -88965390 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1093 1163 272 92 14 chr4 66664782 66665271 -88964849 - RLTR11A2 LTR ERVK 0 527 1 2 1093 1246 258 58 70 chr4 66665687 66666100 -88964020 + MTC LTR MaLR 1 408 -13 2 1093 308 367 41 18 chr4 66666453 66666622 -88963498 + MLT1F LTR MaLR 42 214 -334 2 1093 6103 100 15 24 chr4 66667624 66668548 -88961572 + Lx3_Mus LINE L1 6077 6992 -17 2 1093 306 317 19 38 chr4 66668674 66668779 -88961341 + PB1D10 SINE Alu 13 115 -2 2 1093 29 47 0 0 chr4 66668966 66669009 -88961111 + AT_rich Low_complexity Low_complexity 1 43 0 2 1093 269 303 111 83 chr4 66669613 66669721 -88960399 + B1F SINE Alu 1 111 -38 2 1093 615 200 83 0 chr4 66670793 66670913 -88959207 - B1_Mur2 SINE Alu -8 141 12 2 1093 253 310 0 27 chr4 66671225 66671298 -88958822 + MIR SINE MIR 77 147 -61 2 1093 368 341 41 12 chr4 66671320 66671492 -88958628 + MER5B DNA MER1_type 1 177 -1 2 1093 1013 325 70 23 chr4 66671624 66672009 -88958111 - MLT1C LTR MaLR -26 441 39 2 1093 1248 34 0 0 chr4 66672014 66672160 -88957960 + B1_Mm SINE Alu 1 146 -1 2 1093 216 98 0 121 chr4 66672163 66672221 -88957899 + A-rich Low_complexity Low_complexity 2 52 0 2 1093 611 356 54 5 chr4 66672360 66672583 -88957537 - ORR1E LTR MaLR -122 237 4 2 1093 180 176 0 0 chr4 66673565 66673599 -88956521 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 2 1093 267 31 0 0 chr4 66673601 66673633 -88956487 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1093 192 125 0 0 chr4 66673765 66673797 -88956323 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1093 481 222 125 36 chr4 66675559 66675751 -88954369 - B3 SINE B2 -7 209 1 2 1093 213 200 0 0 chr4 66675832 66675872 -88954248 - PB1D10 SINE Alu -3 114 75 2 1093 1057 99 6 0 chr4 66676659 66676820 -88953300 - L1_Mus4 LINE L1 -1 6635 6474 2 1093 1902 73 0 0 chr4 66676821 66677067 -88953053 + L1_Mus4 LINE L1 6135 6380 -256 2 1093 608 311 91 40 chr4 66677930 66678282 -88951838 - ORR1D2 LTR MaLR 0 370 1 2 1093 255 133 0 0 chr4 66678778 66678823 -88951297 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1093 1830 237 37 80 chr4 66679698 66680235 -88949885 + RLTR20B3 LTR ERVK 21 534 -43 2 1093 719 279 13 38 chr4 66680257 66680495 -88949625 + L1M2 LINE L1 5577 5808 -483 2 1093 760 350 31 19 chr4 66680533 66680856 -88949264 + Lx8 LINE L1 6210 6536 -937 2 1093 753 230 109 5 chr4 66680878 66681079 -88949041 - ORR1B2 LTR MaLR -145 222 1 2 1093 2042 324 64 15 chr4 66681079 66681944 -88948176 + Lx8 LINE L1 6565 7471 -2 2 1093 1153 73 0 0 chr4 66682878 66683028 -88947092 - L1_Mus1 LINE L1 -2 6565 6416 2 1093 1980 41 0 8 chr4 66683028 66683272 -88946848 + L1_Mus1 LINE L1 6193 6434 -133 2 1093 538 329 113 39 chr4 66683288 66683820 -88946300 - L1M2 LINE L1 -496 5384 4840 2 1093 879 238 28 28 chr4 66683820 66684036 -88946084 + B3 SINE B2 1 216 0 2 1093 333 0 0 0 chr4 66684116 66684153 -88945967 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1093 536 348 81 14 chr4 66684189 66684609 -88945511 - L1M2 LINE L1 -1305 4575 4128 2 1093 6054 182 9 57 chr4 66685933 66687394 -88942726 + Lx3C LINE L1 4436 5812 -1196 2 1093 2288 94 12 3 chr4 66687398 66687719 -88942401 + L1VL4 LINE L1 407 730 -5572 2 1093 5551 106 13 30 chr4 66687739 66688380 -88941740 - L1_Mus4 LINE L1 -4 6632 5996 2 1093 660 148 17 17 chr4 66688380 66688497 -88941623 + PB1D9 SINE Alu 2 118 -2 2 1093 5551 106 13 30 chr4 66688497 66688719 -88941401 - L1_Mus4 LINE L1 -641 5995 5784 2 1093 410 100 0 48 chr4 66688723 66688807 -88941313 - Lx LINE L1 -25 6629 6550 2 1093 9308 100 20 4 chr4 66688808 66689806 -88940314 + MusHAL1 LINE L1 1277 2279 -433 2 1093 310 21 43 0 chr4 66689806 66689853 -88940267 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1093 9308 100 20 4 chr4 66689853 66690266 -88939854 + MusHAL1 LINE L1 2280 2709 -3 2 1093 6461 163 33 9 chr4 66690267 66691434 -88938686 + Lx2 LINE L1 5801 6995 -2 2 1093 3685 213 48 10 chr4 66691826 66692646 -88937474 + Lx3C LINE L1 6126 6976 0 2 1093 10361 58 9 0 chr4 66692848 66694178 -88935942 + L1Md_F2 LINE L1 4244 5585 -298 2 1093 7901 48 7 0 chr4 66694179 66695155 -88934965 + L1Md_F2 LINE L1 5587 6569 -13 2 1093 7222 74 3 2 chr4 66696118 66697748 -88932372 - L1Md_F3 LINE L1 -14 6570 4939 2 1093 399 21 0 0 chr4 66698696 66698744 -88931376 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1093 404 104 0 15 chr4 66699141 66699209 -88930911 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1093 24 32 0 0 chr4 66699533 66699564 -88930556 + AT_rich Low_complexity Low_complexity 1 31 0 2 1093 321 26 0 0 chr4 66699682 66699720 -88930400 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1093 549 0 0 0 chr4 66700369 66700430 -88929690 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1093 1239 34 0 0 chr4 66701315 66701462 -88928658 + B1_Mm SINE Alu 1 147 0 2 1093 324 83 0 0 chr4 66701462 66701510 -88928610 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1093 310 232 122 7 chr4 66701672 66701811 -88928309 + L1M2 LINE L1 4968 5122 -1021 2 1093 802 332 88 92 chr4 66701816 66702556 -88927564 + MTE-int LTR MaLR 212 948 -632 2 1093 28 0 0 0 chr4 66703201 66703229 -88926891 + AT_rich Low_complexity Low_complexity 1 28 0 2 1093 207 108 0 26 chr4 66704071 66704126 -88925994 + (TTA)n Simple_repeat Simple_repeat 1 53 0 2 1093 499 271 18 74 chr4 66704737 66704900 -88925220 - RSINE1 SINE B4 -10 155 2 2 1093 3552 89 4 39 chr4 66705624 66706159 -88923961 - L1_Mus2 LINE L1 0 6566 6051 2 1093 198 340 156 24 chr4 66706603 66706808 -88923312 - MIR SINE MIR -18 244 13 2 1093 369 400 68 7 chr4 66707875 66708021 -88922099 + RSINE1 SINE B4 1 155 -10 2 1093 364 342 25 8 chr4 66708589 66708707 -88921413 - MLT1J2 LTR MaLR -328 120 1 2 1093 235 257 157 0 chr4 66708707 66708777 -88921343 + MIRb SINE MIR 184 264 -4 2 1093 594 0 0 0 chr4 66709164 66709230 -88920890 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1093 582 41 0 0 chr4 66709342 66709415 -88920705 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1093 222 118 0 0 chr4 66709872 66709906 -88920214 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1093 1051 106 0 0 chr4 66709909 66710051 -88920069 - B1_Mus1 SINE Alu -6 142 1 2 1093 509 340 0 58 chr4 66711058 66711214 -88918906 - B3A SINE B2 -30 168 22 2 1093 13992 46 1 2 chr4 66711963 66713800 -88916320 - L1Md_A LINE L1 -590 5992 4158 2 1093 1191 115 16 0 chr4 66713784 66713975 -88916145 - L1_Mus4 LINE L1 -658 5978 5785 2 1093 276 113 14 40 chr4 66713977 66714051 -88916069 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 2 1093 865 100 0 0 chr4 66714051 66714171 -88915949 - B1_Mus1 SINE Alu -1 147 28 2 1093 306 265 10 0 chr4 66714189 66714205 -88915915 - L1_Mur2 LINE L1 -341 5823 5807 2 1093 2550 60 3 18 chr4 66714205 66714544 -88915576 - L1Md_F3 LINE L1 -16 6568 6235 2 136 10894 177 30 126 chr4 66714544 66716070 -88914050 - L1_Mur2 LINE L1 -358 5806 4281 2 1094 485 89 10 72 chr4 66716070 66716167 -88913953 - L1Md_F2 LINE L1 -2 6580 6490 2 1094 10894 177 30 126 chr4 66716167 66717686 -88912434 - L1_Mur2 LINE L1 -1597 4280 3012 2 1094 219 318 0 15 chr4 66718254 66718321 -88911799 - L2b LINE L2 -6 3369 3304 2 1094 33 43 0 0 chr4 66718974 66719021 -88911099 + AT_rich Low_complexity Low_complexity 1 47 0 3 1094 204 214 0 0 chr4 66719189 66719245 -88910875 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 3 1094 652 303 120 56 chr4 66719877 66720401 -88909719 - Lx9 LINE L1 -1102 6542 5875 3 1094 1120 307 75 22 chr4 66720399 66720528 -88909592 + Lx8 LINE L1 6395 6522 -951 3 1094 180 0 0 0 chr4 66720528 66720548 -88909572 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1094 1120 307 75 22 chr4 66720548 66720967 -88909153 + Lx8 LINE L1 6523 6971 -502 3 1094 217 259 0 36 chr4 66721020 66721104 -88909016 + CT-rich Low_complexity Low_complexity 1 81 0 3 1094 4066 123 11 3 chr4 66721857 66722485 -88907635 - Lx LINE L1 0 6654 6022 3 1094 362 286 0 0 chr4 66722802 66722879 -88907241 + PB1D10 SINE Alu 13 89 -28 3 1094 1379 284 8 45 chr4 66723018 66723398 -88906722 - MTE2a LTR MaLR -11 368 3 3 1094 1952 285 140 32 chr4 66723429 66724273 -88905847 - Lx6 LINE L1 -8 7452 6518 3 1094 896 276 25 22 chr4 66724273 66724547 -88905573 - Lx6 LINE L1 -1187 6273 5999 3 1094 270 81 0 0 chr4 66725464 66725501 -88904619 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1094 414 0 0 0 chr4 66726375 66726421 -88903699 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1094 3622 132 4 4 chr4 66726422 66726976 -88903144 - L1_Mus4 LINE L1 -27 6609 6056 3 1094 816 282 104 39 chr4 66727835 66728219 -88901901 - L1MA4 LINE L1 -370 5930 5522 3 1094 270 116 0 0 chr4 66728350 66728393 -88901727 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1094 426 273 31 19 chr4 66728442 66728660 -88901460 - L1_Mm LINE L1 -404 5479 5291 3 1094 33367 87 4 7 chr4 66728855 66733756 -88896364 - L1Md_F2 LINE L1 -1 6581 1713 3 1094 986 102 0 26 chr4 66733756 66733770 -88896350 - B1_Mus1 SINE Alu 0 148 136 3 1094 201 39 0 0 chr4 66733770 66733796 -88896324 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1094 986 102 0 26 chr4 66733796 66733932 -88896188 - B1_Mus1 SINE Alu -13 135 2 3 1094 33367 99 30 18 chr4 66733932 66735011 -88895109 - L1Md_F2 LINE L1 -4171 1712 603 3 1094 263 298 36 73 chr4 66735756 66735948 -88894172 + RLTR21 LTR ERVK 1070 1254 -318 3 1094 581 370 89 0 chr4 66736366 66736623 -88893497 + B4A SINE B4 13 292 0 3 1094 220 343 0 54 chr4 66736708 66736782 -88893338 + ID4 SINE ID 5 74 -9 3 1094 489 329 48 23 chr4 66737444 66737842 -88892278 + L1MA9 LINE L1 5616 6023 -289 3 1094 350 264 20 33 chr4 66737871 66737986 -88892134 + B3A SINE B2 1 105 -90 3 1094 798 143 0 0 chr4 66738805 66738938 -88891182 + (CAAGA)n Simple_repeat Simple_repeat 3 135 0 3 1094 2235 224 53 20 chr4 66739161 66739398 -88890722 + Lx6 LINE L1 6935 7189 -271 3 1094 1828 66 4 55 chr4 66739398 66739669 -88890451 - L1Md_F2 LINE L1 0 6582 6326 3 1094 2235 224 53 20 chr4 66739669 66739937 -88890183 + Lx6 LINE L1 7190 7457 -3 3 1094 6984 130 6 3 chr4 66740867 66741986 -88888134 + Lx LINE L1 5528 6649 -5 3 1094 289 246 42 17 chr4 66742073 66742193 -88887927 + CT-rich Low_complexity Low_complexity 3 125 0 3 1094 425 308 73 3 chr4 66742453 66742627 -88887493 - MLT1D LTR MaLR -1 626 323 3 1094 407 182 13 0 chr4 66744182 66744259 -88885861 + URR1B DNA MER1_type 86 163 -62 3 1094 628 241 32 99 chr4 66744412 66744633 -88885487 + URR1B DNA MER1_type 20 225 0 3 1094 180 217 0 0 chr4 66745231 66745277 -88884843 + GA-rich Low_complexity Low_complexity 3 48 0 3 1094 204 97 0 0 chr4 66745312 66745343 -88884777 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1094 476 305 28 21 chr4 66746053 66746197 -88883923 - ID_B1 SINE B4 -9 215 71 3 1094 21 57 0 0 chr4 66746356 66746391 -88883729 + AT_rich Low_complexity Low_complexity 1 35 0 3 1094 21 0 0 0 chr4 66746580 66746601 -88883519 + AT_rich Low_complexity Low_complexity 1 21 0 3 1094 22 0 0 0 chr4 66746671 66746693 -88883427 + AT_rich Low_complexity Low_complexity 1 22 0 3 1094 439 342 6 0 chr4 66747813 66747971 -88882149 + L1M4c LINE L1 31 189 -6195 3 1094 452 351 99 36 chr4 66748108 66748442 -88881678 + L1M4c LINE L1 992 1346 -5038 3 1094 450 0 0 0 chr4 66748445 66748495 -88881625 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1094 379 203 94 0 chr4 66748525 66748653 -88881467 + Lx9 LINE L1 7502 7641 -3 3 1094 230 305 31 10 chr4 66748683 66748779 -88881341 + L1M4c LINE L1 1360 1457 -4927 3 1094 278 52 0 94 chr4 66748832 66748888 -88881232 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1094 1080 83 7 0 chr4 66748888 66749033 -88881087 + B1_Mm SINE Alu 2 147 0 3 1094 278 52 0 94 chr4 66749033 66749061 -88881059 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 3 1094 6154 256 34 26 chr4 66749190 66751355 -88878765 - Lx7 LINE L1 -272 7424 5250 3 1094 1659 216 19 42 chr4 66751336 66751810 -88878310 - Lx7 LINE L1 -2028 3849 3387 3 1094 231 135 58 0 chr4 66751825 66751877 -88878243 - Lx7 LINE L1 -2818 3062 3008 3 1094 4899 226 91 41 chr4 66751953 66754095 -88876025 - Lx7 LINE L1 -2862 3018 765 3 1094 303 355 29 33 chr4 66754386 66754596 -88875524 + L1M4 LINE L1 5306 5514 -660 3 1094 243 300 50 100 chr4 66756360 66756460 -88873660 + MER45A DNA Tip100 28 122 -56 3 1094 7779 58 3 1 chr4 66756460 66757436 -88872684 - L1Md_F2 LINE L1 -14 6568 5591 3 1094 13769 32 7 0 chr4 66757456 66759120 -88871000 + L1_Mm LINE L1 3892 5566 -317 3 1094 279 243 45 12 chr4 66760615 66760707 -88869413 + MIRc SINE MIR 74 171 -97 3 1094 329 126 4 0 chr4 66761570 66761638 -88868482 - L1MA5 LINE L1 -365 5935 5847 3 1094 180 0 0 0 chr4 66761669 66761689 -88868431 + (CAGAA)n Simple_repeat Simple_repeat 3 22 0 3 1094 26 0 0 0 chr4 66761745 66761771 -88868349 + AT_rich Low_complexity Low_complexity 1 26 0 3 1094 620 262 288 6 chr4 66762854 66763173 -88866947 + Lx6 LINE L1 6703 7111 -349 3 1094 596 328 12 65 chr4 66763189 66763304 -88866816 + Lx6 LINE L1 7203 7315 -145 3 1094 864 29 0 0 chr4 66763304 66763407 -88866713 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 3 1094 596 328 12 65 chr4 66763407 66763536 -88866584 + Lx6 LINE L1 7316 7434 -26 3 1094 246 82 48 32 chr4 66763648 66763711 -88866409 + T-rich Low_complexity Low_complexity 3 66 0 3 1094 1131 68 7 0 chr4 66763712 66763858 -88866262 - B1_Mus2 SINE Alu 0 147 1 3 1094 627 81 0 0 chr4 66764243 66764329 -88865791 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 3 1094 366 157 0 0 chr4 66764616 66764699 -88865421 + GA-rich Low_complexity Low_complexity 1 83 0 3 1094 291 329 142 30 chr4 66765169 66765401 -88864719 - MIRb SINE MIR -7 261 4 3 1094 189 370 76 30 chr4 66766138 66766269 -88863851 + MIR SINE MIR 15 151 -111 3 1094 1862 311 88 14 chr4 66766778 66767563 -88862557 - Lx8 LINE L1 -194 7279 6437 3 1094 309 117 0 0 chr4 66767586 66767646 -88862474 + (A)n Simple_repeat Simple_repeat 1 60 0 3 1094 195 146 0 0 chr4 66767756 66767797 -88862323 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1094 7063 96 9 5 chr4 66768185 66769527 -88860593 + L1_Mus2 LINE L1 5215 6564 -2 3 1094 3579 68 25 0 chr4 66770287 66770761 -88859359 + L1_Mus1 LINE L1 6073 6558 -9 3 1094 351 0 0 0 chr4 66771016 66771055 -88859065 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 3 1094 478 285 111 16 chr4 66771524 66771713 -88858407 - MER2 DNA MER2_type -67 278 72 3 1094 310 333 7 29 chr4 66775330 66775466 -88854654 + L2a LINE L2 3293 3425 -1 3 1094 601 267 12 53 chr4 66777940 66778110 -88852010 + RMER30 DNA MER1_type 34 196 -6 3 1094 191 246 121 15 chr4 66778966 66779032 -88851088 + MIRc SINE MIR 47 119 -149 3 1094 537 44 0 0 chr4 66779127 66779195 -88850925 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1094 297 68 0 0 chr4 66779415 66779459 -88850661 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1094 230 89 0 43 chr4 66780406 66780453 -88849667 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 3 1094 16110 22 0 0 chr4 66780509 66783061 -88847059 - L1Md_T LINE L1 0 6582 4031 3 1094 2540 176 152 51 chr4 66783061 66783371 -88846749 + RMER6C LTR ERVK 1 339 -351 3 1094 546 54 0 0 chr4 66783371 66783445 -88846675 + (CAGTT)n Simple_repeat Simple_repeat 1 74 0 3 1094 756 108 0 0 chr4 66783455 66783585 -88846535 + (GA)n Simple_repeat Simple_repeat 1 130 0 3 1094 2540 176 152 51 chr4 66783585 66783890 -88846230 + RMER6C LTR ERVK 351 689 -1 3 1094 507 17 0 0 chr4 66784568 66784628 -88845492 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1094 22 0 0 0 chr4 66784891 66784913 -88845207 + AT_rich Low_complexity Low_complexity 1 22 0 3 1094 3123 139 6 12 chr4 66785045 66785554 -88844566 + L1_Mur2 LINE L1 4715 5220 -657 3 1094 201 302 34 34 chr4 66785862 66785951 -88844169 + L2a LINE L2 3336 3424 -2 3 1094 360 164 0 0 chr4 66786925 66786992 -88843128 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 3 1094 3769 174 98 63 chr4 66787183 66788133 -88841987 + RLTR13C1 LTR ERVK 1 983 0 3 1094 1142 97 0 6 chr4 66788717 66788893 -88841227 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 3 1094 27 62 0 0 chr4 66789140 66789188 -88840932 + AT_rich Low_complexity Low_complexity 1 48 0 3 1094 180 0 0 0 chr4 66789482 66789502 -88840618 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 1094 387 0 0 0 chr4 66790099 66790142 -88839978 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1094 314 265 121 67 chr4 66790917 66791069 -88839051 + MTEa LTR MaLR 211 379 0 3 1094 919 330 86 38 chr4 66791069 66791548 -88838572 + MTEa-int LTR MaLR 1 502 -1078 3 1094 5185 62 24 4 chr4 66791551 66792260 -88837860 - L1Md_F2 LINE L1 0 6582 5872 3 1094 7660 208 78 67 chr4 66792546 66793170 -88836950 - L1_Mur3 LINE L1 -1519 4361 3750 3 1094 4172 137 12 8 chr4 66793170 66793837 -88836283 - Lx2 LINE L1 -1 6996 6327 3 1094 7660 208 78 67 chr4 66793837 66794097 -88836023 - L1_Mur3 LINE L1 -2131 3749 3466 3 1094 306 67 0 0 chr4 66794097 66794142 -88835978 + (GTTTG)n Simple_repeat Simple_repeat 5 49 0 3 1094 7660 208 78 67 chr4 66794142 66794175 -88835945 - L1_Mur3 LINE L1 -2415 3465 3444 3 1094 2302 66 119 11 chr4 66794175 66794527 -88835593 - RLTR10 LTR ERVK 0 390 1 3 1094 7660 208 78 67 chr4 66794527 66795325 -88834795 - L1_Mur3 LINE L1 -2437 3443 2666 3 1094 997 71 42 14 chr4 66795325 66795468 -88834652 - B1_Mus1 SINE Alu 0 148 2 3 1094 7660 208 78 67 chr4 66795468 66796029 -88834091 - L1_Mur3 LINE L1 -3215 2665 2056 3 1094 228 35 0 0 chr4 66796029 66796058 -88834062 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1094 7660 208 78 67 chr4 66796058 66796203 -88833917 - L1_Mur3 LINE L1 -3825 2055 1910 3 1094 802 170 0 0 chr4 66796541 66796676 -88833444 + URR1B DNA MER1_type 91 225 0 3 1094 385 328 71 131 chr4 66796700 66796967 -88833153 - MTE2a LTR MaLR -89 290 40 3 1094 1053 78 14 0 chr4 66796992 66797134 -88832986 + B1_Mus1 SINE Alu 5 148 0 3 1094 242 48 0 67 chr4 66797134 66797179 -88832941 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1094 1786 117 25 14 chr4 66797956 66798241 -88831879 + Lx2 LINE L1 6710 6997 0 3 1094 249 358 110 0 chr4 66798712 66798821 -88831299 - B3A SINE B2 -8 190 70 4 1094 326 74 0 18 chr4 66800295 66800350 -88829770 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1094 623 175 4 4 chr4 66801158 66801424 -88828696 + GA-rich Low_complexity Low_complexity 1 266 0 4 1094 572 328 45 0 chr4 66801424 66801601 -88828519 - B3A SINE B2 -13 185 1 4 1094 239 298 29 78 chr4 66801628 66801730 -88828390 + MIRc SINE MIR 51 147 -121 4 1094 354 296 64 9 chr4 66801911 66802020 -88828100 - B3A SINE B2 -83 115 1 4 1094 3372 38 2 0 chr4 66804042 66804437 -88825683 - MTA_Mm LTR MaLR 0 396 1 4 1094 24 32 0 0 chr4 66805203 66805234 -88824886 + AT_rich Low_complexity Low_complexity 1 31 0 4 1094 355 325 55 38 chr4 66805906 66806143 -88823977 - Lx9 LINE L1 -180 7464 7224 4 1094 3296 149 27 35 chr4 66807878 66808505 -88821615 - RMER16-int LTR ERVK -2077 3329 2708 4 1094 185 281 83 24 chr4 66810314 66810398 -88819722 + MIRb SINE MIR 104 192 -76 4 1094 3193 105 39 2 chr4 66810401 66810886 -88819234 + L1_Mus3 LINE L1 6134 6636 -2 4 1094 11885 128 44 19 chr4 66811482 66812776 -88817344 - L1_Mus4 LINE L1 -6 6630 5322 4 1094 1127 68 0 7 chr4 66812776 66812925 -88817195 - B1_Mus1 SINE Alu 0 148 1 4 1094 11885 169 29 25 chr4 66812925 66812999 -88817121 - L1_Mus4 LINE L1 -562 5321 5243 4 1094 330 45 0 0 chr4 66812999 66813043 -88817077 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1094 11885 203 44 33 chr4 66813043 66815553 -88814567 - L1_Mus4 LINE L1 -641 5242 2634 4 1094 486 49 0 0 chr4 66815698 66815759 -88814361 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1094 386 303 0 9 chr4 66815865 66815975 -88814145 - Lx8 LINE L1 -514 6959 6851 4 1094 299 271 153 0 chr4 66815980 66816065 -88814055 + B1F SINE Alu 31 128 -21 4 1094 287 260 52 0 chr4 66817269 66817346 -88812774 - MIR3 SINE MIR -36 172 92 4 1094 1784 160 3 44 chr4 66817745 66817960 -88812160 - RLTR10E LTR ERVK -3 308 106 4 1094 6370 46 17 3 chr4 66817960 66818743 -88811377 - L1Md_F2 LINE L1 -12 6570 5777 4 1094 1784 160 3 44 chr4 66818743 66818848 -88811272 - RLTR10E LTR ERVK -206 105 1 4 1094 5124 134 13 43 chr4 66818944 66819804 -88810316 - Lx LINE L1 -7 6647 5814 4 1094 4327 171 46 46 chr4 66819804 66820761 -88809359 - RMER17B LTR ERVK -1 957 1 4 1094 10710 137 22 35 chr4 66820765 66821475 -88808645 - L1_Mur1 LINE L1 -67 5819 5132 4 1094 1146 75 0 0 chr4 66821475 66821622 -88808498 - B1_Mus2 SINE Alu 0 147 1 4 1094 10710 137 22 35 chr4 66821622 66821660 -88808460 - L1_Mur1 LINE L1 -755 5131 5110 4 1094 1385 115 84 24 chr4 66821660 66821910 -88808210 - L1_Mus3 LINE L1 0 6638 6374 4 1094 10710 137 22 35 chr4 66821910 66823098 -88807022 - L1_Mur1 LINE L1 -777 5109 3907 4 1094 464 185 12 12 chr4 66823098 66823180 -88806940 - ORR1B1 LTR MaLR -312 82 1 4 1094 224 322 33 11 chr4 66823580 66823671 -88806449 + L2a LINE L2 3333 3425 -1 4 1094 25 0 0 0 chr4 66824101 66824126 -88805994 + AT_rich Low_complexity Low_complexity 1 25 0 4 1094 399 56 0 0 chr4 66824414 66824468 -88805652 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1094 233 162 0 0 chr4 66825320 66825357 -88804763 + L1M LINE L1 5385 5421 -762 4 1094 1457 178 88 11 chr4 66825462 66825746 -88804374 - Lx2 LINE L1 -2 6995 6690 4 1094 310 77 0 58 chr4 66826055 66826124 -88803996 + (CAAAAA)n Simple_repeat Simple_repeat 1 65 0 4 1094 351 235 12 0 chr4 66826389 66826474 -88803646 + RMER1B Other Other 61 146 -920 4 1094 3087 263 48 54 chr4 66826911 66827922 -88802198 + RMER1B Other Other 63 1066 0 4 1094 500 292 28 7 chr4 66827928 66828073 -88802047 - ORR1E LTR MaLR -206 153 6 4 1094 22 70 0 0 chr4 66828667 66828710 -88801410 + AT_rich Low_complexity Low_complexity 1 43 0 4 1094 348 64 0 0 chr4 66829585 66829632 -88800488 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1094 28 79 0 0 chr4 66829831 66829894 -88800226 + AT_rich Low_complexity Low_complexity 1 63 0 4 1094 467 306 8 8 chr4 66830349 66830474 -88799646 - B1_Mur1 SINE Alu -6 143 19 4 1094 400 279 113 5 chr4 66830948 66831296 -88798824 - Lx9 LINE L1 -2 7642 7234 4 1094 3531 190 102 35 chr4 66831830 66832679 -88797441 - RMER13B LTR ERVK 0 908 3 4 1094 448 276 15 43 chr4 66834303 66834478 -88795642 + MIRb SINE MIR 11 189 -87 4 1094 5328 33 0 5 chr4 66834639 66835276 -88794844 - L1Md_T LINE L1 0 6582 5949 4 1094 217 132 0 0 chr4 66835420 66835458 -88794662 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4 1094 22 35 0 0 chr4 66836189 66836218 -88793902 + AT_rich Low_complexity Low_complexity 1 29 0 4 1094 213 222 69 0 chr4 66836295 66836367 -88793753 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 4 1094 222 118 0 0 chr4 66836487 66836521 -88793599 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4 1094 493 326 0 7 chr4 66836544 66836683 -88793437 - B3 SINE B2 -76 140 3 4 1094 332 170 56 11 chr4 66836888 66836977 -88793143 + Lx4A LINE L1 6964 7056 -2 4 1094 413 50 17 0 chr4 66837054 66837114 -88793006 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1094 211 358 115 38 chr4 66837529 66837686 -88792434 + MIR3 SINE MIR 22 190 -18 4 1094 305 309 10 31 chr4 66838166 66838263 -88791857 + RSINE1 SINE B4 2 96 -69 4 1094 819 266 22 59 chr4 66838269 66838589 -88791531 + Lx5 LINE L1 6743 7050 0 4 1094 854 189 0 0 chr4 66838611 66838759 -88791361 - Lx3C LINE L1 -721 6255 6108 4 1094 3722 142 18 11 chr4 66838757 66839384 -88790736 + Lx3C LINE L1 6261 6891 -85 4 1094 297 0 0 0 chr4 66839384 66839417 -88790703 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1094 22 35 0 0 chr4 66839513 66839542 -88790578 + AT_rich Low_complexity Low_complexity 1 29 0 4 1094 977 328 102 42 chr4 66839799 66840733 -88789387 + MTE2b-int LTR MaLR 388 1364 -6 4 1094 358 286 0 0 chr4 66840740 66840838 -88789282 + MTE2b LTR MaLR 1 98 -281 4 1094 420 317 70 41 chr4 66841274 66841659 -88788461 - L1M2 LINE L1 -4298 2551 2102 4 1094 972 303 126 5 chr4 66842848 66843111 -88787009 - MTD LTR MaLR 0 419 112 4 1094 324 0 0 0 chr4 66843111 66843147 -88786973 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1094 342 0 0 0 chr4 66843147 66843184 -88786936 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1094 972 303 126 5 chr4 66843184 66843291 -88786829 - MTD LTR MaLR -308 111 5 4 1094 1773 165 17 23 chr4 66844367 66844679 -88785441 - RMER6C LTR ERVK 0 690 382 4 1094 207 0 0 0 chr4 66844679 66844702 -88785418 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1094 1773 165 17 23 chr4 66844702 66844736 -88785384 - RMER6C LTR ERVK -309 381 346 4 1094 407 214 85 75 chr4 66844817 66844842 -88785278 - B1_Mus2 SINE Alu -22 125 19 4 1094 492 198 0 0 chr4 66844842 66844923 -88785197 - MT2B LTR ERVL -338 263 183 4 1094 280 81 0 0 chr4 66844937 66844974 -88785146 - RMER6D LTR ERVK -683 37 1 4 1094 603 261 118 38 chr4 66844974 66845362 -88784758 - Arthur1 DNA Tip100 -86 3861 3443 4 1094 243 288 40 40 chr4 66845409 66845485 -88784635 - Arthur1 DNA Tip100 -3567 380 305 4 1094 28 48 0 0 chr4 66846425 66846467 -88783653 + AT_rich Low_complexity Low_complexity 1 42 0 4 136 4526 196 19 22 chr4 66846563 66847529 -88782591 + Lx2B LINE L1 6038 7000 0 4 1095 501 17 0 0 chr4 66849118 66849176 -88780944 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1095 715 299 55 11 chr4 66849872 66850143 -88779977 + B4A SINE B4 5 287 -5 4 1095 423 0 0 0 chr4 66850159 66850206 -88779914 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1095 396 0 0 0 chr4 66850206 66850249 -88779871 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1095 1038 59 13 25 chr4 66850281 66850438 -88779682 + L1Md_F3 LINE L1 6430 6584 0 4 1095 266 347 58 39 chr4 66850940 66851096 -88779024 + LTR50 LTR ERVL 14 172 -623 4 1095 423 263 8 8 chr4 66851333 66851467 -88778653 + CT-rich Low_complexity Low_complexity 2 135 0 4 1095 8137 19 0 0 chr4 66851852 66852793 -88777327 + L1Md_T LINE L1 4646 5586 -297 4 1095 8306 38 1 0 chr4 66852793 66853788 -88776332 + L1Md_T LINE L1 5587 6582 0 4 1095 592 143 0 0 chr4 66854208 66854313 -88775807 + Lx2 LINE L1 6893 6997 0 4 1095 5518 30 5 3 chr4 66854405 66855066 -88775054 + L1Md_F3 LINE L1 5909 6570 -14 4 1095 243 88 0 0 chr4 66855127 66855161 -88774959 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 1095 180 279 51 107 chr4 66855183 66855360 -88774760 - L2 LINE L2 -930 2489 2323 4 1095 180 217 0 0 chr4 66857076 66857122 -88772998 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 4 1095 309 109 0 0 chr4 66857229 66857284 -88772836 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 4 1095 229 304 12 12 chr4 66857817 66857897 -88772223 + ID2 SINE ID 4 83 0 4 1095 910 305 72 32 chr4 66858695 66859040 -88771080 - ORR1E LTR MaLR 0 359 1 4 1095 2225 202 76 2 chr4 66859139 66859610 -88770510 + Lx4B LINE L1 5872 6377 -681 4 1095 4095 154 16 11 chr4 66859633 66860583 -88769537 - Lx4A LINE L1 -939 6119 5162 4 1095 198 67 21 43 chr4 66860657 66860704 -88769416 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 4 1095 2019 86 130 3 chr4 66861148 66861464 -88768656 - L1_Mus4 LINE L1 -7 6629 6274 4 1095 1196 145 2 233 chr4 66861500 66861516 -88768604 - L1_Mm LINE L1 -416 5467 5452 4 1095 252 0 0 0 chr4 66861516 66861544 -88768576 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1095 1196 145 2 233 chr4 66861544 66861817 -88768303 - L1_Mm LINE L1 -432 5451 5258 4 1095 1124 75 7 0 chr4 66861817 66861964 -88768156 - B1_Mus1 SINE Alu 0 148 1 4 1095 1196 145 2 233 chr4 66861964 66862068 -88768052 - L1_Mm LINE L1 -626 5257 5164 4 1095 605 12 24 0 chr4 66862072 66862155 -88767965 + L1Md_F2 LINE L1 6483 6567 -15 4 1095 344 320 26 26 chr4 66862432 66862583 -88767537 - MIRc SINE MIR -36 232 82 4 1095 530 242 40 120 chr4 66862940 66863165 -88766955 + B3 SINE B2 1 207 -9 4 1095 577 224 87 45 chr4 66863539 66863768 -88766352 - Lx4B LINE L1 -7 7051 6746 4 1095 1872 235 76 6 chr4 66863774 66863933 -88766187 + Lx4B LINE L1 5867 6043 -1015 4 1095 423 0 0 0 chr4 66863933 66863980 -88766140 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1095 1872 235 76 6 chr4 66863980 66864296 -88765824 + Lx4B LINE L1 6044 6375 -683 4 1095 479 329 51 0 chr4 66864502 66864660 -88765460 - MIRb SINE MIR -30 238 73 4 1095 237 33 0 0 chr4 66865609 66865639 -88764481 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1095 470 331 48 24 chr4 66865639 66865806 -88764314 - B3 SINE B2 -45 171 1 5 1095 1087 95 0 0 chr4 66866057 66866204 -88763916 + B1_Mus1 SINE Alu 1 147 -1 5 1095 23 0 0 0 chr4 66866426 66866449 -88763671 + AT_rich Low_complexity Low_complexity 1 23 0 5 1095 1056 230 18 3 chr4 66866564 66866848 -88763272 - Lx9 LINE L1 -1 7643 7356 5 1095 1058 274 15 22 chr4 66866848 66867172 -88762948 - Lx9 LINE L1 -717 6927 6606 5 1095 2882 118 10 12 chr4 66867411 66867898 -88762222 - MusHAL1 LINE L1 -1807 905 420 5 1095 3568 123 12 18 chr4 66867898 66868459 -88761661 + L1_Mus3 LINE L1 6075 6632 -6 5 1095 630 183 0 0 chr4 66869380 66869549 -88760571 + (AGTAG)n Simple_repeat Simple_repeat 4 172 0 5 1095 1164 28 0 0 chr4 66869550 66869694 -88760426 + (CAGAC)n Simple_repeat Simple_repeat 2 145 0 5 1095 234 128 0 0 chr4 66872293 66872332 -88757788 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1095 549 0 0 0 chr4 66872333 66872394 -88757726 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1095 21 0 0 0 chr4 66872420 66872441 -88757679 + AT_rich Low_complexity Low_complexity 1 21 0 5 1095 235 204 56 0 chr4 66872664 66872718 -88757402 - Charlie1 DNA MER1_type -1646 1135 1079 5 1095 246 62 0 0 chr4 66872751 66872783 -88757337 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1095 2169 54 4 0 chr4 66872941 66873221 -88756899 - L1Md_F2 LINE L1 -594 5990 5710 5 1095 3964 71 25 0 chr4 66873222 66873745 -88756375 + L1Md_F2 LINE L1 6034 6569 -13 5 1095 4589 115 91 25 chr4 66874960 66875513 -88754607 - L1VL4 LINE L1 0 3559 2983 5 1095 1130 75 0 0 chr4 66875513 66875659 -88754461 - B1_Mus1 SINE Alu -1 147 2 5 1095 4589 115 91 25 chr4 66875659 66875960 -88754160 - L1VL4 LINE L1 -577 2982 2648 5 1095 5699 118 65 16 chr4 66875950 66877636 -88752484 - L1VL4 LINE L1 -1612 1947 188 5 1095 38 22 0 0 chr4 66877727 66877772 -88752348 + AT_rich Low_complexity Low_complexity 1 45 0 5 1095 393 290 105 18 chr4 66877782 66878010 -88752110 - L1MA8 LINE L1 -42 6249 6002 5 1095 373 291 94 153 chr4 66878247 66878482 -88751638 + B4A SINE B4 2 222 -70 5 1095 414 57 0 0 chr4 66878627 66878680 -88751440 + (TATG)n Simple_repeat Simple_repeat 2 54 0 5 1095 268 257 110 16 chr4 66878810 66879006 -88751114 - L1M3e LINE L1 -4722 2386 2211 5 1095 472 303 17 11 chr4 66879526 66879703 -88750417 - L1M3e LINE L1 -6846 184 7 5 1095 270 246 136 70 chr4 66880224 66880336 -88749784 + MIRb SINE MIR 60 172 -90 5 1095 530 328 63 49 chr4 66880470 66880675 -88749445 + B4 SINE B4 4 211 -81 5 1095 609 40 0 0 chr4 66880675 66880751 -88749369 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1095 689 285 156 57 chr4 66881361 66881797 -88748323 + RMER5 LTR ERV1 56 534 0 5 1095 216 218 91 0 chr4 66881882 66881937 -88748183 + L2a LINE L2 3367 3426 0 5 1095 863 331 58 18 chr4 66882051 66882328 -88747792 + B4A SINE B4 1 288 -4 5 1095 388 357 0 37 chr4 66882457 66882591 -88747529 + B4 SINE B4 1 129 -163 5 1095 423 0 0 0 chr4 66883020 66883067 -88747053 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1095 21 0 0 0 chr4 66884216 66884237 -88745883 + AT_rich Low_complexity Low_complexity 1 21 0 5 1095 363 351 108 50 chr4 66884307 66884812 -88745308 + L1M4 LINE L1 4531 5060 -1086 5 1095 3408 87 8 4 chr4 66885021 66885505 -88744615 + L1_Mus1 LINE L1 6082 6567 0 5 1095 1797 207 17 8 chr4 66885674 66886025 -88744095 + ORR1B1 LTR MaLR 41 394 0 5 1095 535 355 0 0 chr4 66886629 66886770 -88743350 + RSINE1 SINE B4 3 143 -22 5 1095 288 0 0 0 chr4 66886781 66886813 -88743307 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1095 693 36 0 0 chr4 66887494 66887578 -88742542 + (TTC)n Simple_repeat Simple_repeat 2 85 0 5 1095 232 227 40 13 chr4 66888441 66888517 -88741603 - L1MC4 LINE L1 -259 7783 7706 5 1095 1652 214 35 32 chr4 66888609 66888985 -88741135 + ORR1C1 LTR MaLR 1 377 -1 5 1095 214 87 43 0 chr4 66889105 66889151 -88740969 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 1095 244 288 27 27 chr4 66889918 66889993 -88740127 - ORR1D1 LTR MaLR -292 82 8 5 1095 405 296 18 9 chr4 66890943 66891052 -88739068 + PB1D10 SINE Alu 6 115 -2 5 1095 23 0 0 0 chr4 66891225 66891248 -88738872 + AT_rich Low_complexity Low_complexity 1 23 0 5 1095 577 176 20 27 chr4 66891320 66891466 -88738654 - RMER17B LTR ERVK -498 460 316 5 1095 3797 235 76 51 chr4 66891728 66893226 -88736894 + L1_Mur2 LINE L1 1345 2880 -2997 5 1095 846 30 0 0 chr4 66893233 66893334 -88736786 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 1095 495 145 0 0 chr4 66893335 66893418 -88736702 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 5 1095 539 189 22 15 chr4 66893424 66893558 -88736562 + L1_Mur2 LINE L1 2861 2995 -2882 5 1095 4711 179 56 2 chr4 66893568 66894450 -88735670 + Lx5 LINE L1 4 932 -6052 5 1095 35169 50 1 4 chr4 66894437 66899942 -88730178 + L1Md_T LINE L1 4 5589 -297 5 1095 8450 31 0 0 chr4 66899942 66900938 -88729182 + L1Md_T LINE L1 5590 6585 0 5 1095 2859 111 2 2 chr4 66900943 66901619 -88728501 + Lx5 LINE L1 910 1585 -4301 5 1095 1735 55 0 43 chr4 66901615 66901845 -88728275 + L1_Mus1 LINE L1 6169 6388 -179 5 1095 402 94 0 0 chr4 66901845 66901909 -88728211 + L1_Mus2 LINE L1 6501 6564 -2 5 1095 2017 97 19 6 chr4 66901912 66902223 -88727897 + Lx5 LINE L1 1578 1892 -3994 5 1095 2851 168 29 4 chr4 66902222 66902773 -88727347 + Lx5 LINE L1 4115 4679 -1198 5 1095 5966 215 33 21 chr4 66902772 66904432 -88725688 + Lx5 LINE L1 5291 6966 -84 5 1095 1062 24 0 0 chr4 66904432 66904557 -88725563 + (GGAGA)n Simple_repeat Simple_repeat 1 125 0 5 1095 5966 234 42 18 chr4 66904557 66904619 -88725501 + Lx5 LINE L1 6967 7042 -8 5 1095 325 371 9 0 chr4 66904847 66904952 -88725168 + ID_B1 SINE B4 2 107 -117 5 1095 1010 175 0 5 chr4 66905765 66905949 -88724171 + B2_Mm2 SINE B2 2 184 -11 5 1095 240 100 0 0 chr4 66906688 66906728 -88723392 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 5 1095 22 56 0 0 chr4 66907285 66907321 -88722799 + AT_rich Low_complexity Low_complexity 1 36 0 5 1095 345 47 0 0 chr4 66907380 66907423 -88722697 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 5 1095 6480 164 24 27 chr4 66907441 66909580 -88720540 + Lx LINE L1 4525 6650 -4 5 1095 235 425 0 0 chr4 66910303 66910416 -88719704 - MIR SINE MIR -103 159 47 5 1095 312 148 0 0 chr4 66910490 66910551 -88719569 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1095 3605 59 114 0 chr4 66911583 66912057 -88718063 + L1_Mus1 LINE L1 6037 6564 -3 5 1095 286 295 0 0 chr4 66912323 66912401 -88717719 + ID4_ SINE ID 1 78 -5 5 1095 732 345 43 38 chr4 66912412 66912858 -88717262 - Lx8 LINE L1 -651 6822 6375 5 1095 393 22 0 0 chr4 66912860 66912906 -88717214 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1095 722 58 10 0 chr4 66912908 66913012 -88717108 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1095 3475 138 10 46 chr4 66913037 66913839 -88716281 + Lx4A LINE L1 5252 6044 -1014 5 1095 2738 187 65 4 chr4 66913837 66914380 -88715740 + Lx4A LINE L1 6472 7047 -11 5 1095 210 37 0 0 chr4 66914380 66914407 -88715713 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 5 1095 1254 319 94 33 chr4 66914797 66915639 -88714481 - L1_Rod LINE L1 0 5847 4955 5 1095 495 118 0 0 chr4 66915977 66916053 -88714067 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 5 1095 502 248 142 21 chr4 66916436 66916675 -88713445 - L1MA8 LINE L1 -25 6266 5999 5 1095 373 297 106 26 chr4 66916765 66917023 -88713097 - L1MA8 LINE L1 -722 5590 5313 5 1095 484 15 31 0 chr4 66917028 66917093 -88713027 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1095 715 284 74 23 chr4 66917116 66917469 -88712651 - L1MA8 LINE L1 -902 5241 4871 5 1095 5606 142 12 6 chr4 66917594 66918505 -88711615 - Lx LINE L1 -13 6641 5725 5 1095 1810 204 84 31 chr4 66918519 66918970 -88711150 - RLTR16 LTR ERVK -28 477 3 5 1095 1518 234 91 29 chr4 66919040 66919415 -88710705 + RMER10B LTR ERVL 1 398 0 5 1095 23 54 0 0 chr4 66920682 66920719 -88709401 + AT_rich Low_complexity Low_complexity 1 37 0 5 1095 21 0 0 0 chr4 66921179 66921200 -88708920 + AT_rich Low_complexity Low_complexity 1 21 0 5 1095 6937 184 69 11 chr4 66921200 66922154 -88707966 - Lx4A LINE L1 -3 7055 6025 5 1095 207 0 0 0 chr4 66922154 66922177 -88707943 + (CTTA)n Simple_repeat Simple_repeat 1 23 0 5 1095 1068 90 0 0 chr4 66922177 66922322 -88707798 - B1_Mm SINE Alu -2 145 1 5 1095 6937 153 52 7 chr4 66922322 66923480 -88706640 - Lx4A LINE L1 -1034 6024 4815 5 1095 207 0 0 0 chr4 66923656 66923679 -88706441 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1095 21 71 0 0 chr4 66924344 66924386 -88705734 + AT_rich Low_complexity Low_complexity 1 42 0 5 1095 336 333 72 10 chr4 66924768 66924977 -88705143 - MIRc SINE MIR 0 268 47 5 1095 4536 133 23 27 chr4 66925767 66927031 -88703089 + L1_Mus3 LINE L1 4383 6631 -7 5 1095 387 0 0 0 chr4 66927031 66927074 -88703046 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1095 1322 177 16 62 chr4 66927074 66927146 -88702974 + L1_Mus3 LINE L1 4626 4687 -1193 5 1095 281 0 82 0 chr4 66927147 66927196 -88702924 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 1095 3168 111 10 0 chr4 66928072 66928558 -88701562 - L1_Mur1 LINE L1 -2904 2982 2492 5 1095 10193 102 56 2 chr4 66928554 66928721 -88701399 + L1_Mur1 LINE L1 2991 3161 -2725 5 1095 309 26 0 0 chr4 66928721 66928759 -88701361 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1095 10193 102 56 2 chr4 66928759 66930224 -88699896 + L1_Mur1 LINE L1 3162 4710 -1176 5 1095 697 104 37 7 chr4 66930249 66930385 -88699735 + L1_Mus3 LINE L1 6495 6634 -4 5 1095 399 68 0 0 chr4 66931013 66931072 -88699048 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 5 1095 303 28 0 0 chr4 66931072 66931108 -88699012 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1095 609 216 22 0 chr4 66931176 66931310 -88698810 - Lx9 LINE L1 -569 7075 6939 5 1095 1680 209 94 11 chr4 66931305 66931741 -88698379 + Lx9 LINE L1 7173 7644 0 5 1095 308 311 59 48 chr4 66931748 66931934 -88698186 + B3A SINE B2 1 188 -10 5 1095 24 32 0 0 chr4 66931955 66931986 -88698134 + AT_rich Low_complexity Low_complexity 1 31 0 5 1095 23 0 0 0 chr4 66932010 66932033 -88698087 + AT_rich Low_complexity Low_complexity 1 23 0 5 1095 7441 90 3 1 chr4 66932163 66933584 -88696536 + L1_Mus1 LINE L1 5143 6565 -2 5 1095 458 359 19 27 chr4 66933695 66933953 -88696167 + RMER15 LTR ERVL 284 539 -36 5 1095 360 284 99 26 chr4 66934002 66934154 -88695966 + MIR SINE MIR 71 233 -29 5 1095 190 408 79 26 chr4 66934190 66934379 -88695741 + L2b LINE L2 3176 3374 -1 5 1095 378 279 21 28 chr4 66934883 66935027 -88695093 + MER103 DNA DNA 14 156 -10 5 1095 414 274 107 102 chr4 66935294 66935725 -88694395 - L1MC3 LINE L1 -150 7635 7203 5 1095 335 320 53 38 chr4 66935919 66936052 -88694068 - B1F SINE Alu -8 141 7 6 1095 437 330 44 30 chr4 66936084 66936399 -88693721 - L1MC3 LINE L1 -858 6927 6628 5 1095 34809 38 3 27 chr4 66936711 66941595 -88688525 - L1Md_T LINE L1 0 6582 1704 6 1095 1959 53 0 4 chr4 66941595 66941843 -88688277 - L1Md_T LINE L1 -2 6580 6334 6 1095 34809 37 3 31 chr4 66941843 66942195 -88687925 - L1Md_T LINE L1 -4180 1703 1472 6 1095 2227 122 9 3 chr4 66942175 66942519 -88687601 - L1Md_T LINE L1 -5939 785 440 6 1095 2222 198 30 14 chr4 66943582 66944080 -88686040 + RLTR11A2 LTR ERVK 1 506 -21 6 1095 210 37 0 0 chr4 66944335 66944362 -88685758 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1095 264 162 237 26 chr4 66944434 66944510 -88685610 + MLT1A LTR MaLR 266 357 -17 6 1095 1254 300 20 35 chr4 66944605 66944999 -88685121 + Lx6 LINE L1 6897 7284 -176 6 1095 273 240 0 0 chr4 66945071 66945146 -88684974 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1095 264 374 0 23 chr4 66945289 66945384 -88684736 + ID4 SINE ID 1 93 -59 6 1095 4090 214 57 66 chr4 66945384 66946497 -88683623 + RLTR25A LTR ERVK 1 1103 0 6 1095 432 0 0 0 chr4 66946585 66946633 -88683487 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 6 1095 1115 89 0 6 chr4 66946635 66946815 -88683305 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 1095 1118 210 55 0 chr4 66946815 66947034 -88683086 - Lx4A LINE L1 -10 7048 6818 6 1095 5479 180 23 12 chr4 66947107 66948269 -88681851 - Lx2B LINE L1 -1042 4835 3661 6 1095 6506 197 29 18 chr4 66948265 66950407 -88679713 + Lx2B LINE L1 4832 7000 0 6 1095 805 107 0 15 chr4 66950410 66950543 -88679577 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 6 1095 1932 202 122 20 chr4 66950930 66951759 -88678361 - L1_Mur3 LINE L1 -1109 4777 3771 6 1095 333 68 0 0 chr4 66953499 66953543 -88676577 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 6 1095 186 43 0 0 chr4 66953544 66953567 -88676553 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1095 830 167 19 13 chr4 66953572 66953730 -88676390 - Lx3A LINE L1 -17 6964 6806 6 1095 636 182 6 28 chr4 66953879 66954060 -88676060 + CT-rich Low_complexity Low_complexity 4 180 0 6 1095 560 328 35 40 chr4 66955661 66955861 -88674259 + B3 SINE B2 15 213 -3 6 1095 309 51 0 0 chr4 66956155 66956194 -88673926 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1095 416 324 102 33 chr4 66956209 66956729 -88673391 + L1M2 LINE L1 4725 5280 -863 6 1095 1101 89 0 0 chr4 66956756 66956902 -88673218 + B1_Mm SINE Alu 2 147 0 6 1095 555 43 0 0 chr4 66956992 66957062 -88673058 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1095 769 297 68 42 chr4 66957064 66957737 -88672383 - L1M2 LINE L1 -525 5787 5100 6 1095 291 268 42 59 chr4 66957880 66957999 -88672121 + PB1D10 SINE Alu 1 117 0 6 1095 22 0 0 0 chr4 66958978 66959000 -88671120 + AT_rich Low_complexity Low_complexity 1 22 0 6 1095 1226 278 0 25 chr4 66959109 66959393 -88670727 - ORR1D2 LTR MaLR 0 370 94 6 1095 720 0 0 0 chr4 66959634 66959714 -88670406 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 6 1095 808 284 64 137 chr4 66959872 66960260 -88669860 - MTE2b LTR MaLR -2 377 18 6 1095 348 24 0 0 chr4 66961847 66961888 -88668232 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1095 389 291 52 93 chr4 66963544 66963573 -88666547 - B2_Mm2 SINE B2 -10 185 151 6 1095 342 0 0 0 chr4 66963573 66963611 -88666509 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1095 644 291 52 93 chr4 66963611 66963774 -88666346 - B3A SINE B2 -46 152 1 6 1095 2552 90 80 0 chr4 66964124 66964514 -88665606 - BGLII LTR ERVK 0 421 1 6 1095 3445 201 22 7 chr4 66964646 66965422 -88664698 - Lx3A LINE L1 -1042 5939 5146 6 1095 189 0 0 0 chr4 66965430 66965451 -88664669 + (CCCTAA)n Simple_repeat Simple_repeat 2 22 0 6 1095 2065 237 53 34 chr4 66965491 66965850 -88664270 - RMER6D LTR ERVK 0 720 368 6 1095 444 19 0 0 chr4 66965850 66965903 -88664217 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1095 2065 237 53 34 chr4 66965903 66966068 -88664052 - RMER6D LTR ERVK -353 367 186 6 1095 882 212 11 0 chr4 66966068 66966252 -88663868 + Lx5 LINE L1 5894 6079 -971 6 1095 2598 206 29 95 chr4 66966256 66966639 -88663481 - RMER20B LTR ERVK -4 623 280 6 1095 3897 58 8 10 chr4 66966639 66967147 -88662973 - L1Md_F2 LINE L1 -2 6580 6074 6 1095 2598 206 29 95 chr4 66967147 66967427 -88662693 - RMER20B LTR ERVK -348 279 4 6 1095 1860 240 13 5 chr4 66967427 66967825 -88662295 + Lx5 LINE L1 6075 6475 -575 6 1095 661 120 0 0 chr4 66968069 66968169 -88661951 - B1_Mus2 SINE Alu -8 139 40 6 1095 344 352 38 8 chr4 66968221 66968524 -88661596 - L1M4 LINE L1 -2150 3996 3681 6 1095 396 0 0 0 chr4 66968524 66968568 -88661552 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1095 258 362 53 12 chr4 66968568 66968583 -88661537 - L1M4 LINE L1 -2466 3680 3666 6 1095 445 328 101 6 chr4 66968612 66968790 -88661330 - ID_B1 SINE B4 -26 198 4 6 1095 337 288 37 30 chr4 66968993 66969165 -88660955 - L1M5 LINE L1 -2687 3459 3280 6 1095 1015 156 6 28 chr4 66969175 66969209 -88660911 - B2_Mm2 SINE B2 -20 175 145 6 1095 3275 106 89 17 chr4 66969209 66969735 -88660385 - LTRIS2 LTR ERV1 0 564 1 6 1095 1015 156 6 28 chr4 66969735 66969878 -88660242 - B2_Mm2 SINE B2 -51 144 2 6 1095 284 0 28 0 chr4 66970163 66970199 -88659921 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1095 2028 139 0 0 chr4 66970677 66970986 -88659134 - L1_Mm LINE L1 -37 5846 5538 6 1095 3176 187 12 11 chr4 66970988 66971627 -88658493 + L1_Mur2 LINE L1 4757 5396 -481 6 1095 3600 137 29 14 chr4 66971720 66972303 -88657817 + Lx LINE L1 5910 6501 -153 6 1095 4668 107 19 0 chr4 66972510 66973210 -88656910 - L1_Mm LINE L1 -1598 4285 3573 6 1095 7347 127 23 7 chr4 66973209 66974451 -88655669 + MusHAL1 LINE L1 81 1342 -1370 6 1095 8474 118 106 12 chr4 66974448 66976827 -88653293 + L1_Mus1 LINE L1 3919 6567 0 6 136 6255 102 90 2 chr4 66976816 66978049 -88652071 + L1_Mus3 LINE L1 5306 6632 -6 6 1096 201 167 0 0 chr4 66978065 66978101 -88652019 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1096 184 77 25 25 chr4 66978142 66978182 -88651938 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1096 248 192 96 0 chr4 66978426 66978478 -88651642 - B4 SINE B4 -230 62 6 6 1096 9412 74 1 1 chr4 66978795 66980086 -88650034 - L1Md_F2 LINE L1 -656 5926 4637 6 1096 2765 126 23 0 chr4 66980108 66980544 -88649576 + Lx LINE L1 6192 6637 -17 6 1096 4105 80 3 11 chr4 66980545 66980712 -88649408 + RLTR22_Mus LTR ERVK 3 169 -1639 6 1096 2559 84 3 3 chr4 66980712 66981058 -88649062 - ORR1A0 LTR MaLR 0 346 1 6 1096 4105 80 3 11 chr4 66981058 66981462 -88648658 + RLTR22_Mus LTR ERVK 170 570 -1238 6 1096 3167 73 34 42 chr4 66981466 66981768 -88648352 + RLTR22_Mus LTR ERVK 1016 1309 -499 6 1096 360 0 0 0 chr4 66981768 66981808 -88648312 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1096 3167 73 34 42 chr4 66981808 66981980 -88648140 + RLTR22_Mus LTR ERVK 1310 1486 -322 6 1096 1191 248 58 47 chr4 66982599 66982941 -88647179 + MTD LTR MaLR 1 346 -73 6 1096 1135 88 0 0 chr4 66983291 66983438 -88646682 + B1_Mus1 SINE Alu 2 148 0 6 1096 40 0 0 0 chr4 66983443 66983483 -88646637 + AT_rich Low_complexity Low_complexity 1 40 0 6 1096 1727 40 71 0 chr4 66983612 66983838 -88646282 + L1Md_F3 LINE L1 6343 6584 0 6 1096 23 0 0 0 chr4 66983855 66983878 -88646242 + AT_rich Low_complexity Low_complexity 1 23 0 6 1096 38808 33 4 6 chr4 66984544 66990738 -88639382 - L1Md_A LINE L1 0 6582 406 6 1096 663 288 45 5 chr4 66990946 66991145 -88638975 - Lx9 LINE L1 -1036 6608 6402 6 1096 232 164 9 46 chr4 66991159 66991268 -88638852 + (TTTG)n Simple_repeat Simple_repeat 4 108 0 6 1096 297 0 0 0 chr4 66991270 66991303 -88638817 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1096 243 61 0 0 chr4 66991303 66991335 -88638785 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1096 1478 301 106 25 chr4 66991366 66992270 -88637850 + Lx9 LINE L1 6648 7624 -20 6 1096 21 36 0 0 chr4 66992277 66992305 -88637815 + AT_rich Low_complexity Low_complexity 1 28 0 6 1096 2226 216 193 27 chr4 66992319 66993029 -88637091 + Lx4B LINE L1 6226 7053 -5 6 1096 203 0 37 0 chr4 66993078 66993105 -88637015 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1096 988 342 11 3 chr4 66993135 66993417 -88636703 + B4 SINE B4 7 290 -2 6 1096 462 209 0 0 chr4 66993718 66993857 -88636263 + (TG)n Simple_repeat Simple_repeat 1 139 0 6 1096 917 319 65 22 chr4 66993905 66994321 -88635799 - RMER5 LTR ERV1 -68 466 33 6 1096 225 0 0 0 chr4 66994935 66994960 -88635160 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1096 1018 307 103 18 chr4 66995470 66995918 -88634202 + RMER5 LTR ERV1 49 534 0 6 1096 423 0 0 0 chr4 66996038 66996085 -88634035 + (TATG)n Simple_repeat Simple_repeat 4 50 0 6 1096 458 322 34 122 chr4 66996106 66996343 -88633777 - B4 SINE B4 -74 218 3 6 1096 2292 122 2 88 chr4 66996977 66997409 -88632711 - Lx LINE L1 -3 6651 6257 6 1096 1061 97 0 0 chr4 66997726 66997870 -88632250 - B1_Mus2 SINE Alu -2 145 2 6 1096 1004 169 74 10 chr4 66998377 66998580 -88631540 - URR1B DNA MER1_type -9 216 1 6 1096 22 0 0 0 chr4 66998809 66998831 -88631289 + AT_rich Low_complexity Low_complexity 1 22 0 6 1096 314 384 18 0 chr4 66999344 66999456 -88630664 + PB1D10 SINE Alu 2 115 -2 6 1096 276 161 0 0 chr4 67000029 67000091 -88630029 + T-rich Low_complexity Low_complexity 1 62 0 1 1096 7537 74 5 1 chr4 67000109 67001207 -88628913 - L1_Mus2 LINE L1 0 6566 5465 2 1096 30 45 0 0 chr4 67001505 67001549 -88628571 + AT_rich Low_complexity Low_complexity 1 44 0 3 1096 557 117 135 40 chr4 67001559 67001764 -88628356 - IAPLTR2_Mm LTR ERVK 0 475 216 4 1096 256 189 13 39 chr4 67001770 67001847 -88628273 + GA-rich Low_complexity Low_complexity 3 77 0 5 1096 1515 119 33 4 chr4 67001857 67002102 -88628018 - IAPLTR2_Mm LTR ERVK -223 252 1 4 1096 22 35 0 0 chr4 67002485 67002514 -88627606 + AT_rich Low_complexity Low_complexity 1 29 0 6 1096 371 347 117 34 chr4 67002971 67003296 -88626824 + L1MEf LINE L1 1662 2013 -4229 7 1096 347 331 84 11 chr4 67003271 67003534 -88626586 + L1MEf LINE L1 4346 4627 -1519 7 1096 411 38 0 0 chr4 67003644 67003697 -88626423 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1096 272 380 45 18 chr4 67003895 67004005 -88626115 + MLT1F2 LTR MaLR 260 372 -188 9 1096 4343 164 11 4 chr4 67004299 67005044 -88625076 + Lx2B LINE L1 5970 6719 -281 1 1096 453 156 0 10 chr4 67005044 67005141 -88624979 + Lx2B LINE L1 6901 6996 -4 1 1096 21 0 0 0 chr4 67005264 67005285 -88624835 + AT_rich Low_complexity Low_complexity 1 21 0 1 1096 280 295 10 31 chr4 67005298 67005388 -88624732 + BC1_Mm scRNA scRNA 5 93 -59 1 1096 1313 67 0 11 chr4 67005388 67005570 -88624550 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1096 906 107 0 21 chr4 67005633 67005776 -88624344 + L1Md_F2 LINE L1 6431 6570 -12 1 1096 1307 88 22 5 chr4 67005903 67006087 -88624033 - B2_Mm2 SINE B2 -8 187 1 1 1096 281 238 16 0 chr4 67006403 67006466 -88623654 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1096 240 176 8 157 chr4 67006506 67006627 -88623493 + Lx9 LINE L1 7540 7642 -2 1 1096 249 318 31 37 chr4 67006646 67006809 -88623311 + L1MEf LINE L1 5634 5795 -367 7 1096 289 353 0 25 chr4 67007532 67007654 -88622466 + RMER15 LTR ERVL 301 419 -156 1 1096 241 318 16 0 chr4 67007683 67007746 -88622374 + RMER15 LTR ERVL 496 559 -16 1 1096 252 289 37 110 chr4 67007765 67007901 -88622219 + MIRc SINE MIR 113 241 -27 1 1096 350 222 0 40 chr4 67008287 67008362 -88621758 + RMER15 LTR ERVL 1 72 -503 2 1096 1510 261 77 42 chr4 67008398 67008504 -88621616 + RMER15 LTR ERVL 28 137 -438 2 1096 504 0 0 0 chr4 67008504 67008560 -88621560 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1096 1510 261 77 42 chr4 67008560 67008949 -88621171 + RMER15 LTR ERVL 138 540 -35 2 1096 277 280 13 0 chr4 67009602 67009677 -88620443 + CT-rich Low_complexity Low_complexity 5 80 0 2 1096 313 250 85 57 chr4 67009969 67010075 -88620045 - MLT1J-int LTR MaLR -309 1078 970 2 1096 369 430 0 0 chr4 67010364 67010564 -88619556 - LTR16C LTR ERVL -2 487 288 2 1096 3050 49 0 10 chr4 67010935 67011330 -88618790 + L1Md_F2 LINE L1 6192 6582 0 2 1096 369 360 30 12 chr4 67012441 67012607 -88617513 + MER20 DNA MER1_type 45 213 -6 2 1096 1881 93 96 41 chr4 67012653 67012967 -88617153 - L1Md_F2 LINE L1 -10 6572 6242 2 1096 285 302 10 50 chr4 67013740 67013841 -88616279 + MLT1C LTR MaLR 362 458 -9 2 1096 200 365 46 38 chr4 67014005 67014136 -88615984 - MIR3 SINE MIR -75 133 2 2 1096 266 0 29 0 chr4 67014348 67014382 -88615738 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1096 661 355 4 35 chr4 67014487 67014747 -88615373 - B4A SINE B4 -35 257 6 3 1096 257 109 0 21 chr4 67015120 67015167 -88614953 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 3 1096 375 83 0 0 chr4 67016133 67016193 -88613927 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1096 327 301 51 51 chr4 67016275 67016373 -88613747 - RSINE1 SINE B4 -57 108 11 3 1096 258 258 0 0 chr4 67016401 67016463 -88613657 - L1_Mur3 LINE L1 -2821 3059 2998 3 1096 6291 194 32 164 chr4 67016468 67017253 -88612867 - L1_Mur2 LINE L1 -1861 4016 3479 3 1096 1482 0 11 6 chr4 67017253 67017432 -88612688 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1096 6291 194 32 164 chr4 67017432 67017964 -88612156 - L1_Mur2 LINE L1 -2399 3478 3003 3 1096 285 29 0 0 chr4 67017964 67017998 -88612122 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1096 6291 194 32 164 chr4 67017998 67018998 -88611122 - L1_Mur2 LINE L1 -2875 3002 2006 3 1096 4110 250 29 10 chr4 67019025 67020022 -88610098 + Lx5 LINE L1 5587 6602 -448 3 1096 14660 132 12 15 chr4 67020022 67021585 -88608535 + L1Md_A LINE L1 416 1967 -3916 4 1096 260 27 27 0 chr4 67021585 67021622 -88608498 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1096 14660 83 5 0 chr4 67021622 67022921 -88607199 + L1Md_A LINE L1 1968 3275 -2608 4 1096 3272 36 3 0 chr4 67022921 67023305 -88606815 + IAPEY_LTR LTR ERVK 1 385 0 4 1096 2816 152 14 23 chr4 67023305 67023982 -88606138 + IAPEy-int LTR ERVK 1 1058 -6455 4 1096 21407 47 7 4 chr4 67023982 67026661 -88603459 + IAPEy-int LTR ERVK 4804 7490 -23 4 1096 19039 83 4 2 chr4 67026661 67026684 -88603436 + L1Md_F2 LINE L1 3249 3271 -2612 4 1096 3241 44 3 0 chr4 67026684 67027068 -88603052 + IAPEY_LTR LTR ERVK 1 385 0 4 1096 19039 82 4 2 chr4 67027068 67029980 -88600140 + L1Md_F2 LINE L1 3272 6187 -395 4 1096 34 84 0 0 chr4 67030094 67030177 -88599943 + AT_rich Low_complexity Low_complexity 1 83 0 4 1096 22 0 0 0 chr4 67031115 67031137 -88598983 + AT_rich Low_complexity Low_complexity 1 22 0 4 1096 3938 240 41 13 chr4 67031689 67032715 -88597405 - Lx2B LINE L1 -4 6996 5942 4 1096 248 174 0 0 chr4 67032697 67032743 -88597377 - L1_Mur1 LINE L1 -3157 2720 2675 4 1096 5373 175 23 11 chr4 67032757 67033891 -88596229 - L1_Mur1 LINE L1 -3279 2607 1474 4 1096 3058 101 7 5 chr4 67033891 67034340 -88595780 - L1_Mus3 LINE L1 -3 6635 6186 4 1096 5275 179 9 51 chr4 67034340 67035068 -88595052 - L1_Mur1 LINE L1 -4393 1484 823 4 1096 337 342 169 12 chr4 67035541 67035701 -88594419 + B3A SINE B2 1 185 -13 4 1096 7186 55 1 2 chr4 67036743 67037645 -88592475 - L1Md_F2 LINE L1 0 6582 5682 5 1096 497 283 49 30 chr4 67037651 67037815 -88592305 - ORR1B1 LTR MaLR -187 207 41 5 1096 363 337 35 50 chr4 67038613 67038813 -88591307 + B3A SINE B2 1 197 -1 5 1096 262 373 63 74 chr4 67039627 67039911 -88590209 - RSINE1 SINE B4 -12 280 1 5 1096 600 297 153 19 chr4 67040080 67040311 -88589809 - RCHARR1 DNA MER1_type -509 465 200 5 1096 1650 263 9 44 chr4 67040311 67040745 -88589375 - MTD LTR MaLR 0 419 1 5 1096 584 323 30 6 chr4 67040746 67040914 -88589206 - RCHARR1 DNA MER1_type -774 200 29 5 1096 302 247 51 10 chr4 67043979 67044077 -88586043 + Lx6 LINE L1 7356 7457 -3 5 1096 229 330 64 9 chr4 67046975 67047085 -88583035 - MIR SINE MIR -60 202 87 5 1096 222 150 0 0 chr4 67047207 67047247 -88582873 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 1096 355 178 0 22 chr4 67047247 67047339 -88582781 - Lx2A1 LINE L1 0 7008 6919 5 1096 562 303 5 51 chr4 67047455 67047650 -88582470 - B3A SINE B2 -12 186 1 6 1096 21 0 0 0 chr4 67048362 67048383 -88581737 + AT_rich Low_complexity Low_complexity 1 21 0 6 1096 226 211 19 0 chr4 67049915 67049967 -88580153 + ORR1A2 LTR MaLR 1 53 -274 6 1096 264 333 77 18 chr4 67049981 67050149 -88579971 + RLTR20B2 LTR ERVK 91 280 -297 6 1096 1613 111 95 3 chr4 67050504 67050782 -88579338 + ORR1A2 LTR MaLR 48 371 -13 6 1096 800 186 90 0 chr4 67051002 67051179 -88578941 - B2_Mm2 SINE B2 -2 193 1 6 1096 24 0 0 0 chr4 67051502 67051526 -88578594 + AT_rich Low_complexity Low_complexity 1 24 0 6 1096 204 193 0 34 chr4 67052202 67052261 -88577859 + (TTA)n Simple_repeat Simple_repeat 3 59 0 6 1096 548 349 89 26 chr4 67053640 67053849 -88576271 - ORR1D2 LTR MaLR -77 293 74 6 1096 263 26 51 0 chr4 67053849 67053888 -88576232 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 6 1096 548 349 89 26 chr4 67053888 67053949 -88576171 - ORR1D2 LTR MaLR -297 73 6 6 1096 430 294 11 46 chr4 67053998 67054172 -88575948 + L1_Rod LINE L1 2798 2968 -3172 6 1096 3149 159 63 11 chr4 67054172 67054743 -88575377 + MT2B LTR ERVL 1 601 0 7 1096 430 294 11 46 chr4 67054743 67054828 -88575292 + L1_Rod LINE L1 2969 3048 -3092 6 1096 879 194 122 0 chr4 67054949 67055145 -88574975 - URR1A DNA MER1_type -6 220 1 7 1096 406 299 117 6 chr4 67055386 67055751 -88574369 + L1_Rod LINE L1 4339 4741 -1402 6 1096 1051 192 23 5 chr4 67055798 67056018 -88574102 - URR1B DNA MER1_type -1 224 1 7 1096 506 314 46 36 chr4 67056120 67056731 -88573389 + L1_Rod LINE L1 5001 5625 -675 6 1096 432 0 0 0 chr4 67057000 67057048 -88573072 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1096 392 297 8 63 chr4 67057663 67057789 -88572331 + B1_Mur2 SINE Alu 4 122 -27 7 1096 243 125 0 0 chr4 67057799 67057839 -88572281 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1096 22 94 0 0 chr4 67057850 67057914 -88572206 + AT_rich Low_complexity Low_complexity 1 64 0 7 1096 240 35 0 0 chr4 67058354 67058383 -88571737 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1096 768 85 0 0 chr4 67058383 67058489 -88571631 - B1_Mus2 SINE Alu 0 147 42 7 1096 249 168 112 56 chr4 67058426 67058533 -88571587 - RLTR25B LTR ERVK -519 509 397 7 1096 825 157 15 0 chr4 67058534 67058668 -88571452 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 8 1096 368 146 0 0 chr4 67058672 67058727 -88571393 - B1_Mur4 SINE Alu -95 55 1 8 1096 273 57 0 0 chr4 67059600 67059635 -88570485 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1096 322 305 0 0 chr4 67060776 67060871 -88569249 + CT-rich Low_complexity Low_complexity 1 95 0 8 1096 180 0 0 0 chr4 67061235 67061255 -88568865 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1096 318 375 42 0 chr4 67061706 67061874 -88568246 + ORR1E LTR MaLR 2 176 -183 8 1096 805 161 6 12 chr4 67061993 67062157 -88567963 + (CATATA)n Simple_repeat Simple_repeat 3 165 0 8 1096 756 300 71 35 chr4 67062713 67063079 -88567041 + MTEa LTR MaLR 1 379 0 8 1096 230 310 79 42 chr4 67063236 67063401 -88566719 - L1ME3A LINE L1 -11 6162 5992 8 1096 22 0 0 0 chr4 67063796 67063818 -88566302 + AT_rich Low_complexity Low_complexity 1 22 0 8 1096 5114 162 26 14 chr4 67063818 67064747 -88565373 - Lx3C LINE L1 -1 6975 6036 9 1096 32340 100 11 13 chr4 67065593 67071780 -88558340 - L1Md_F2 LINE L1 -14 6568 392 9 1096 29 28 0 0 chr4 67072050 67072086 -88558034 + AT_rich Low_complexity Low_complexity 1 36 0 9 1096 21 36 0 0 chr4 67072252 67072280 -88557840 + AT_rich Low_complexity Low_complexity 1 28 0 9 1096 929 102 0 0 chr4 67072637 67072765 -88557355 - Lx3C LINE L1 -1203 5778 5651 9 1096 708 307 107 66 chr4 67072931 67072958 -88557162 - RCHARR1 DNA MER1_type -586 388 363 9 1096 2836 84 37 0 chr4 67072958 67073339 -88556781 - MTA_Mm LTR MaLR 0 396 2 9 1096 708 307 107 66 chr4 67073339 67073677 -88556443 - RCHARR1 DNA MER1_type -612 362 8 9 1096 21 0 0 0 chr4 67074612 67074633 -88555487 + AT_rich Low_complexity Low_complexity 1 21 0 9 1096 447 394 18 7 chr4 67074752 67075033 -88555087 - RMER15 LTR ERVL -4 571 288 9 1096 813 60 0 0 chr4 67075274 67075390 -88554730 + (TC)n Simple_repeat Simple_repeat 2 117 0 9 1096 360 0 0 0 chr4 67075390 67075429 -88554691 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1096 511 271 27 34 chr4 67075762 67075911 -88554209 + MTE2a LTR MaLR 230 377 -2 1 1096 25 0 0 0 chr4 67076256 67076281 -88553839 + AT_rich Low_complexity Low_complexity 1 25 0 1 1096 318 114 0 0 chr4 67077747 67077791 -88552329 - ORR1A4 LTR MaLR -12 317 274 1 1096 1300 317 70 23 chr4 67077791 67078363 -88551757 - Lx5 LINE L1 -6 7454 6485 1 1096 1378 285 94 54 chr4 67078361 67078988 -88551132 - Lx5 LINE L1 -683 6367 5716 1 1096 387 192 0 0 chr4 67079661 67079739 -88550381 + CT-rich Low_complexity Low_complexity 3 80 0 1 1096 253 181 58 0 chr4 67079872 67080010 -88550110 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 1 1096 2874 87 17 10 chr4 67080540 67080958 -88549162 - BGLII LTR ERVK 0 421 1 1 1096 345 362 0 0 chr4 67081893 67081987 -88548133 - B3 SINE B2 -121 95 2 1 1096 330 284 24 79 chr4 67082015 67082141 -88547979 - B1F2 SINE Alu 0 149 31 1 1096 649 233 10 35 chr4 67082811 67083104 -88547016 + CT-rich Low_complexity Low_complexity 1 285 0 1 1096 319 325 33 25 chr4 67083300 67083420 -88546700 + B4 SINE B4 2 122 -170 1 1096 23 0 0 0 chr4 67084703 67084726 -88545394 + AT_rich Low_complexity Low_complexity 1 23 0 1 1096 322 302 92 92 chr4 67085128 67085412 -88544708 + MLT1H LTR MaLR 85 368 -181 1 1096 326 352 18 59 chr4 67085885 67086054 -88544066 + RSINE1 SINE B4 2 163 -2 1 1096 252 0 0 0 chr4 67086672 67086700 -88543420 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1096 290 26 26 0 chr4 67086755 67086794 -88543326 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1096 452 314 124 20 chr4 67087124 67087374 -88542746 - Kanga1d DNA Tc2 -150 459 184 1 1096 8883 82 3 37 chr4 67087767 67088327 -88541793 - L1_Mm LINE L1 -1539 4344 3799 1 1096 4112 31 19 0 chr4 67088327 67088811 -88541309 + MT2_Mm LTR ERVL 1 493 0 1 1096 8883 82 3 37 chr4 67088811 67089587 -88540533 - L1_Mm LINE L1 -2085 3798 3054 1 1096 8787 84 0 22 chr4 67089585 67090813 -88539307 + L1Md_F2 LINE L1 4386 5586 -297 1 1096 6544 88 68 1 chr4 67090813 67091735 -88538385 + L1Md_F2 LINE L1 5587 6570 -12 1 1096 195 175 0 0 chr4 67091738 67091795 -88538325 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 1 1096 477 0 0 0 chr4 67091805 67091858 -88538262 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1096 237 83 0 0 chr4 67091858 67091893 -88538227 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1096 627 206 170 0 chr4 67091990 67092155 -88537965 - ORR1D1 LTR MaLR 0 374 182 1 1096 555 29 0 0 chr4 67092155 67092224 -88537896 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1096 4015 196 89 53 chr4 67092315 67093067 -88537053 - Lx2A LINE L1 -845 6128 5396 1 1096 181 0 0 65 chr4 67093067 67093098 -88537022 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1096 4015 192 109 12 chr4 67093098 67093551 -88536569 - Lx2A LINE L1 -488 5395 4884 1 1096 3337 186 29 3 chr4 67093546 67094208 -88535912 + Lx2A LINE L1 4167 4845 -1032 1 1096 2667 180 34 16 chr4 67094235 67094743 -88535377 + Lx2 LINE L1 6459 6975 -22 1 1096 5738 188 299 12 chr4 67094748 67097547 -88532573 + L1_Mus2 LINE L1 2421 6131 -435 1 1096 3018 51 7 25 chr4 67097543 67097948 -88532172 - L1Md_F3 LINE L1 -12 6572 6175 1 1096 2946 113 4 47 chr4 67097932 67098398 -88531722 + L1_Mus2 LINE L1 6115 6560 -6 1 1096 2402 280 65 113 chr4 67098409 67099741 -88530379 + Lx6 LINE L1 5826 7094 -366 1 1096 321 135 0 0 chr4 67099742 67099794 -88530326 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 1 1096 2389 272 82 49 chr4 67099796 67100612 -88529508 - RMER1C Other Other -10 1332 490 1 1096 246 219 0 0 chr4 67100966 67101030 -88529090 + (CATA)n Simple_repeat Simple_repeat 3 66 0 1 1096 1167 274 15 55 chr4 67101131 67101459 -88528661 + RLTR25A LTR ERVK 12 326 -777 1 1096 5807 154 11 6 chr4 67101464 67102518 -88527602 - L1_Mur2 LINE L1 -710 5167 4108 1 1096 5444 157 24 0 chr4 67102530 67103822 -88526298 + Lx LINE L1 5176 6497 -157 1 1096 519 17 0 0 chr4 67103833 67103893 -88526227 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1096 681 13 0 0 chr4 67103893 67103970 -88526150 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1096 885 288 100 20 chr4 67104982 67105333 -88524787 - MTE2b LTR MaLR 0 379 1 1 1096 213 196 0 0 chr4 67105362 67105413 -88524707 + (ATG)n Simple_repeat Simple_repeat 1 51 0 1 1096 243 355 71 0 chr4 67105415 67105570 -88524550 - L2a LINE L2 0 3426 3261 1 1096 287 359 0 46 chr4 67106306 67106414 -88523706 + B3A SINE B2 9 111 -87 1 1096 23 54 0 0 chr4 67106441 67106478 -88523642 + AT_rich Low_complexity Low_complexity 1 37 0 1 1096 22 35 0 0 chr4 67106955 67106984 -88523136 + AT_rich Low_complexity Low_complexity 1 29 0 1 1096 191 36 36 0 chr4 67107539 67107567 -88522553 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1096 4274 76 5 7 chr4 67107569 67108141 -88521979 - L1Md_F2 LINE L1 -2 6580 6010 1 1096 1150 80 0 0 chr4 67108141 67108292 -88521828 + B2_Mm2 SINE B2 7 157 -38 1 1096 438 167 0 0 chr4 67108631 67108739 -88521381 + CT-rich Low_complexity Low_complexity 1 108 0 1 1096 492 18 0 0 chr4 67108739 67108796 -88521324 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1097 501 17 0 0 chr4 67109308 67109366 -88520754 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 1097 277 329 0 0 chr4 67109909 67109994 -88520126 - L1MD2 LINE L1 -79 6280 6196 1 1097 3663 177 17 102 chr4 67110387 67110643 -88519477 + Lx3B LINE L1 5109 5288 -589 1 1097 778 19 0 9 chr4 67110643 67110751 -88519369 - L1Md_T LINE L1 -1 6581 6475 1 1097 3663 169 24 47 chr4 67110751 67111412 -88518708 + Lx3B LINE L1 5289 5961 -1012 1 1097 189 118 59 0 chr4 67111661 67111712 -88518408 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1097 1428 180 108 118 chr4 67112070 67112276 -88517844 - ORR1B1 LTR MaLR -8 386 166 1 1097 3545 75 47 2 chr4 67112276 67112771 -88517349 + L1_Mus3 LINE L1 6121 6637 -1 1 1097 1428 180 108 118 chr4 67112771 67112954 -88517166 - ORR1B1 LTR MaLR -229 165 1 1 1097 27 29 0 0 chr4 67113149 67113183 -88516937 + AT_rich Low_complexity Low_complexity 1 34 0 1 1097 233 170 0 36 chr4 67113574 67113629 -88516491 + CT-rich Low_complexity Low_complexity 3 55 0 1 1097 675 186 89 0 chr4 67113632 67113756 -88516364 - B1_Mus1 SINE Alu -13 135 1 1 1097 30 0 0 0 chr4 67113780 67113810 -88516310 + AT_rich Low_complexity Low_complexity 1 30 0 1 1097 461 293 106 32 chr4 67113822 67114391 -88515729 - L1M2 LINE L1 -582 5718 5098 1 1097 2034 209 31 10 chr4 67114761 67115153 -88514967 - MTC LTR MaLR -8 413 14 1 1097 225 269 9 19 chr4 67115276 67115382 -88514738 - L1M2 LINE L1 -1687 4456 4352 1 1097 658 71 298 9 chr4 67116090 67116204 -88513916 - B1_Mus1 SINE Alu 0 148 2 1 1097 1017 305 104 67 chr4 67116721 67117305 -88512815 - L1M2 LINE L1 -1814 4329 3770 1 1097 2232 54 11 0 chr4 67117305 67117584 -88512536 - L1_Mus1 LINE L1 0 6567 6286 1 1097 1017 305 104 67 chr4 67117584 67118531 -88511589 - L1M2 LINE L1 -2374 3769 2740 1 1097 307 0 49 49 chr4 67118777 67118838 -88511282 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 1 1097 322 250 0 0 chr4 67119011 67119120 -88511000 - L1_Rod LINE L1 -3514 2366 2258 1 1097 1279 245 83 9 chr4 67119123 67119461 -88510659 - ORR1D1 LTR MaLR -2 372 10 1 1097 29 70 0 0 chr4 67119549 67119606 -88510514 + AT_rich Low_complexity Low_complexity 1 57 0 1 1097 965 112 21 0 chr4 67119724 67119867 -88510253 - RMER6C LTR ERVK -4 686 541 1 1097 5931 62 38 6 chr4 67119871 67120654 -88509466 + RLTR13C2 LTR ERVK 1 808 0 1 1097 237 33 0 0 chr4 67120718 67120748 -88509372 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1097 1016 118 7 0 chr4 67120758 67120902 -88509218 - B1_Mus1 SINE Alu -1 147 3 1 1097 2479 39 182 0 chr4 67120993 67121323 -88508797 + L1Md_F2 LINE L1 6185 6574 -8 1 1097 474 188 34 55 chr4 67121385 67121531 -88508589 - Lx4A LINE L1 0 7058 6916 1 1097 233 179 14 43 chr4 67122158 67122228 -88507892 + T-rich Low_complexity Low_complexity 2 69 0 1 1097 1416 198 37 7 chr4 67122233 67122528 -88507592 - Lx3B LINE L1 -3 6970 6667 1 1097 2901 144 29 4 chr4 67122536 67123025 -88507095 - L1_Mur1 LINE L1 0 5886 5386 1 1097 183 42 0 0 chr4 67123025 67123049 -88507071 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1097 1183 54 0 0 chr4 67123049 67123196 -88506924 - B1_Mus2 SINE Alu 0 147 1 1 1097 950 132 6 0 chr4 67123938 67124097 -88506023 + (GGA)n Simple_repeat Simple_repeat 3 162 0 1 1097 549 0 0 0 chr4 67124510 67124571 -88505549 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 1 1097 1185 276 3 20 chr4 67126305 67126608 -88503512 + ORR1D1 LTR MaLR 1 298 -76 1 1097 1886 124 101 80 chr4 67126815 67127280 -88502840 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1097 205 195 0 0 chr4 67128044 67128085 -88502035 + T-rich Low_complexity Low_complexity 1 41 0 1 1097 232 298 158 0 chr4 67128595 67128709 -88501411 + L2 LINE L2 2245 2376 -1043 1 1097 24 67 0 0 chr4 67128910 67128955 -88501165 + AT_rich Low_complexity Low_complexity 1 45 0 1 1097 309 345 50 22 chr4 67130287 67130468 -88499652 + MIRb SINE MIR 53 238 -30 1 1097 257 233 23 0 chr4 67132023 67132109 -88498011 + MER53 DNA hAT 41 128 -65 1 1097 282 143 0 0 chr4 67132268 67132331 -88497789 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1097 608 70 0 11 chr4 67132680 67132767 -88497353 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1 1097 1176 68 0 0 chr4 67132768 67132915 -88497205 - B1_Mus2 SINE Alu 0 147 1 1 1097 3190 224 89 10 chr4 67132921 67133177 -88496943 - Lx2B LINE L1 0 7000 6741 1 1097 338 57 19 0 chr4 67133177 67133230 -88496890 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1097 4993 182 67 13 chr4 67133230 67134417 -88495703 - Lx2B LINE L1 -260 6740 5369 1 1097 225 0 0 0 chr4 67134417 67134442 -88495678 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1097 4993 187 50 20 chr4 67134442 67134967 -88495153 - Lx2B LINE L1 -518 5368 4838 1 1097 233 352 18 53 chr4 67134968 67135082 -88495038 - MER5A DNA MER1_type -76 113 4 1 1097 639 289 113 27 chr4 67135591 67135847 -88494273 + B4A SINE B4 7 284 -8 1 1097 387 0 0 0 chr4 67135854 67135897 -88494223 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1097 1152 98 0 0 chr4 67138883 67139099 -88491021 + (CATA)n Simple_repeat Simple_repeat 1 216 0 1 1097 214 50 50 0 chr4 67139452 67139492 -88490628 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1097 403 285 30 15 chr4 67139573 67139705 -88490415 - MER5A DNA MER1_type -30 159 26 2 1097 270 306 50 30 chr4 67139742 67139843 -88490277 - MIRm SINE MIR -129 147 45 2 1097 277 287 10 60 chr4 67139884 67139984 -88490136 + MamRep434 DNA TcMar 69 163 -263 2 1097 24 32 0 0 chr4 67139992 67140023 -88490097 + AT_rich Low_complexity Low_complexity 1 31 0 2 1097 457 383 57 21 chr4 67140575 67140911 -88489209 + MLT1B LTR MaLR 11 358 -32 2 1097 417 304 116 40 chr4 67141348 67141547 -88488573 + ID_B1 SINE B4 2 215 -9 2 1097 468 0 0 0 chr4 67141697 67141749 -88488371 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1097 1498 33 0 5 chr4 67142378 67142563 -88487557 - L1Md_F2 LINE L1 -455 6129 5946 2 1097 3741 58 0 0 chr4 67142564 67143029 -88487091 + L1Md_F2 LINE L1 6104 6568 -14 2 1097 24 0 0 0 chr4 67143075 67143099 -88487021 + AT_rich Low_complexity Low_complexity 1 24 0 2 1097 257 200 66 57 chr4 67143221 67143327 -88486793 - Lx9 LINE L1 0 7644 7538 2 1097 189 290 16 16 chr4 67143408 67143471 -88486649 + L3b LINE CR1 103 165 -317 2 1097 683 319 39 97 chr4 67144599 67144871 -88485249 + B4 SINE B4 2 272 -20 2 1097 274 309 60 13 chr4 67144871 67144886 -88485234 - RMER12 LTR ERVK -470 852 839 2 1097 984 111 0 0 chr4 67144886 67145057 -88485063 + (TC)n Simple_repeat Simple_repeat 1 171 0 2 1097 683 319 39 97 chr4 67145057 67145078 -88485042 + B4 SINE B4 273 292 0 2 1097 274 309 60 13 chr4 67145078 67145192 -88484928 - RMER12 LTR ERVK -484 838 697 2 1097 390 302 112 6 chr4 67146472 67146632 -88483488 - B3A SINE B2 -18 180 4 2 1097 312 300 127 0 chr4 67146718 67146828 -88483292 - MTE2b LTR MaLR -7 372 249 2 1097 825 263 45 18 chr4 67146910 67147131 -88482989 - MTE2b LTR MaLR -152 227 1 2 1097 211 289 19 0 chr4 67148600 67148652 -88481468 + L2 LINE L2 1996 2048 -1371 2 1097 522 291 78 34 chr4 67148932 67149138 -88480982 - B3 SINE B2 0 216 2 2 1097 377 370 63 56 chr4 67149485 67149897 -88480223 + L2 LINE L2 2666 3080 -339 2 1097 486 324 20 7 chr4 67150000 67150146 -88479974 + RSINE1 SINE B4 12 159 -6 2 1097 504 0 0 0 chr4 67150147 67150203 -88479917 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2 1097 504 0 0 0 chr4 67150204 67150260 -88479860 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1097 264 111 0 0 chr4 67150260 67150304 -88479816 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2 1097 1296 194 156 16 chr4 67150379 67150694 -88479426 - ORR1B2 LTR MaLR -8 359 1 2 1097 705 302 54 15 chr4 67151212 67151531 -88478589 - ORR1D1 LTR MaLR -7 352 8 2 1097 30289 95 33 22 chr4 67151915 67153565 -88476555 - L1Md_F2 LINE L1 -2 6580 4884 2 1097 226 272 47 37 chr4 67153565 67153672 -88476448 + MER72B LTR ERV1 280 387 -381 2 1097 30289 95 33 22 chr4 67153672 67158045 -88472075 - L1Md_F2 LINE L1 -2 4883 383 2 1097 473 283 0 30 chr4 67158332 67158463 -88471657 - MIRb SINE MIR -102 166 40 2 1097 5984 36 0 0 chr4 67159665 67160743 -88469377 + L1Md_F2 LINE L1 5163 6240 -342 2 1097 226 202 37 28 chr4 67160779 67160886 -88469234 + Lx7 LINE L1 7438 7545 -151 2 1097 311 23 47 0 chr4 67161209 67161252 -88468868 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 1097 35 0 0 0 chr4 67161867 67161902 -88468218 + AT_rich Low_complexity Low_complexity 1 35 0 2 1097 766 262 43 20 chr4 67162124 67162428 -88467692 - L1MC3 LINE L1 -22 7763 7453 2 1097 346 331 65 33 chr4 67162428 67162581 -88467539 + MLT1A LTR MaLR 1 158 -216 2 1097 634 145 15 15 chr4 67162593 67162726 -88467394 + C-rich Low_complexity Low_complexity 5 137 0 2 1097 243 257 34 34 chr4 67162928 67163045 -88467075 - L1MC3 LINE L1 -333 7452 7336 2 1097 458 296 28 47 chr4 67163114 67163143 -88466977 - B3 SINE B2 -3 213 188 2 1097 531 0 0 0 chr4 67163143 67163202 -88466918 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1097 458 296 28 47 chr4 67163202 67163385 -88466735 - B3 SINE B2 -29 187 5 2 1097 2103 88 6 50 chr4 67163557 67163894 -88466226 + RLTRETN_Mm LTR ERVK 1 322 0 2 1097 18442 80 14 20 chr4 67163895 67166531 -88463589 + MMETn-int LTR ERVK 2 2622 -2222 2 1097 304 322 72 20 chr4 67166542 67166694 -88463426 - L1MC3 LINE L1 -710 7075 6916 2 1097 712 229 19 0 chr4 67166803 67166960 -88463160 - Lx6 LINE L1 -834 6626 6467 2 1097 5671 53 22 6 chr4 67167112 67167836 -88462284 + L1Md_F2 LINE L1 5835 6570 -12 2 1097 194 57 0 54 chr4 67167849 67167886 -88462234 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1097 3530 92 12 4 chr4 67168120 67168624 -88461496 + L1_Mus3 LINE L1 6129 6636 -2 2 1097 5985 199 259 16 chr4 67168637 67170910 -88459210 + L1_Mur3 LINE L1 887 3772 -2105 2 1097 394 169 22 0 chr4 67170962 67171051 -88459069 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1097 249 411 9 0 chr4 67172155 67172262 -88457858 + MLT2B3 LTR ERVL 1 108 -446 2 1097 587 26 0 0 chr4 67172316 67172393 -88457727 + L1_Mus1 LINE L1 6490 6566 -1 2 1097 426 245 0 20 chr4 67172526 67172626 -88457494 + MTEa LTR MaLR 274 371 -8 2 1097 198 354 61 17 chr4 67172899 67173014 -88457106 - MIRm SINE MIR -105 171 52 2 1097 5416 47 1 0 chr4 67173495 67174157 -88455963 - L1Md_F2 LINE L1 0 6582 5920 2 1097 1267 179 36 0 chr4 67174194 67174418 -88455702 - Lx3B LINE L1 -266 6707 6476 2 1097 1192 210 24 0 chr4 67174418 67174666 -88455454 + Lx3B LINE L1 6715 6968 -5 2 1097 1114 255 43 91 chr4 67174686 67175061 -88455059 - Lx6 LINE L1 -311 7149 6793 2 1097 846 49 0 0 chr4 67175126 67175228 -88454892 - L1Md_F3 LINE L1 -415 6169 6068 2 1097 3296 44 12 2 chr4 67175229 67175642 -88454478 + L1Md_F3 LINE L1 6154 6570 -14 2 1097 270 290 43 40 chr4 67175768 67176006 -88454114 + Lx8 LINE L1 5695 5930 -370 2 1097 573 318 67 34 chr4 67176450 67176717 -88453403 + B4A SINE B4 1 276 -16 2 1097 758 335 114 34 chr4 67176898 67177399 -88452721 + Lx8 LINE L1 6924 7464 -9 2 1097 1778 222 3 39 chr4 67177871 67178259 -88451861 - Lx2B LINE L1 -18 6982 6609 2 1097 441 0 0 0 chr4 67178633 67178682 -88451438 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1097 665 199 0 7 chr4 67178724 67178871 -88451249 + CT-rich Low_complexity Low_complexity 3 148 0 2 1097 182 91 0 29 chr4 67178993 67179027 -88451093 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1097 243 0 0 0 chr4 67179186 67179213 -88450907 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1097 305 164 0 14 chr4 67179349 67179423 -88450697 + CT-rich Low_complexity Low_complexity 2 74 0 2 1097 4784 95 24 7 chr4 67180031 67180729 -88449391 - L1_Mus4 LINE L1 -19 6617 5908 2 1097 426 207 0 0 chr4 67180992 67181074 -88449046 + L1_Mur2 LINE L1 4920 5001 -876 2 1097 190 301 40 27 chr4 67182080 67182155 -88447965 - L2a LINE L2 -36 3390 3315 2 1097 560 293 20 50 chr4 67182587 67182885 -88447235 - B4A SINE B4 0 292 4 2 1097 213 284 25 63 chr4 67184396 67184475 -88445645 - MER91B DNA Tip100 -113 77 2 2 1097 627 108 0 0 chr4 67184691 67184784 -88445336 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1097 21 0 0 0 chr4 67185293 67185314 -88444806 + AT_rich Low_complexity Low_complexity 1 21 0 2 1097 373 296 0 67 chr4 67186413 67186518 -88443602 - PB1D9 SINE Alu -19 101 4 2 1097 186 213 21 11 chr4 67186713 67186808 -88443312 + GA-rich Low_complexity Low_complexity 1 96 0 2 1097 1754 334 99 22 chr4 67188208 67188241 -88441879 + Lx9 LINE L1 6379 6412 -1232 2 1097 1150 126 11 0 chr4 67188241 67188424 -88441696 + B2_Mm1t SINE B2 2 186 -7 2 1097 1754 334 99 22 chr4 67188424 67189416 -88440704 + Lx9 LINE L1 6413 7462 -182 2 1097 512 106 11 0 chr4 67189416 67189510 -88440610 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1097 1754 334 99 22 chr4 67189510 67189633 -88440487 + Lx9 LINE L1 7463 7616 -28 2 1097 32 26 0 0 chr4 67189633 67189672 -88440448 + AT_rich Low_complexity Low_complexity 1 39 0 2 1097 407 309 19 44 chr4 67189782 67189941 -88440179 + MER3 DNA MER1_type 43 197 -12 2 1097 186 43 0 0 chr4 67191223 67191246 -88438874 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1097 881 92 138 0 chr4 67191249 67191379 -88438741 - B1_Mus1 SINE Alu 0 148 1 2 1097 390 94 0 0 chr4 67191877 67191941 -88438179 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1097 1455 228 22 3 chr4 67191972 67192284 -88437836 - ORR1C1 LTR MaLR 0 378 61 2 1097 638 218 15 0 chr4 67192284 67192417 -88437703 + RLTR15 LTR ERVK 3 137 -222 2 1097 203 297 16 71 chr4 67192793 67192920 -88437200 + GA-rich Low_complexity Low_complexity 3 122 0 2 1097 354 390 27 5 chr4 67193751 67193939 -88436181 - MTE2b LTR MaLR -131 248 57 2 1097 21 0 0 0 chr4 67194578 67194599 -88435521 + AT_rich Low_complexity Low_complexity 1 21 0 2 1097 1922 138 36 6 chr4 67195414 67195749 -88434371 + L1_Mus4 LINE L1 6289 6633 -3 2 1097 243 0 0 0 chr4 67195776 67195803 -88434317 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1097 22 35 0 0 chr4 67196021 67196050 -88434070 + AT_rich Low_complexity Low_complexity 1 29 0 2 1097 643 211 28 12 chr4 67196232 67196407 -88433713 - MTD LTR MaLR -8 411 213 2 1097 226 374 31 39 chr4 67197189 67197317 -88432803 + MIRc SINE MIR 53 179 -89 2 1097 2519 139 46 38 chr4 67198163 67198641 -88431479 + RLTR45 LTR ERVK 1 482 0 2 1097 194 250 0 0 chr4 67198842 67198878 -88431242 + MIRc SINE MIR 66 101 -167 2 1097 4868 77 21 5 chr4 67199412 67200068 -88430052 - L1_Mus1 LINE L1 0 6567 5901 2 1097 432 319 11 87 chr4 67200932 67201117 -88429003 + B4A SINE B4 2 172 -120 2 1097 264 40 39 20 chr4 67201130 67201181 -88428939 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 1097 351 339 26 9 chr4 67201191 67201304 -88428816 + B4A SINE B4 172 286 -6 2 1097 216 158 0 0 chr4 67201331 67201388 -88428732 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1097 504 0 0 0 chr4 67201388 67201444 -88428676 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1097 246 311 66 23 chr4 67201515 67201617 -88428503 + MIRb SINE MIR 12 122 -146 2 1097 338 144 0 40 chr4 67201841 67201942 -88428178 + T-rich Low_complexity Low_complexity 1 97 0 2 1097 345 277 112 14 chr4 67202198 67202341 -88427779 + Charlie12 DNA MER1_type 4 160 -2713 2 1097 343 348 60 22 chr4 67202203 67202385 -88427735 - RMER30 DNA MER1_type -9 193 5 2 1097 279 0 0 0 chr4 67203145 67203176 -88426944 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1097 801 295 19 19 chr4 67203536 67203802 -88426318 - MLT1E2 LTR MaLR 0 627 362 2 1097 207 191 0 0 chr4 67204345 67204392 -88425728 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1097 247 281 168 6 chr4 67204531 67204710 -88425410 + L3 LINE CR1 3708 3915 -574 3 1097 26 0 0 0 chr4 67204898 67204924 -88425196 + AT_rich Low_complexity Low_complexity 1 26 0 3 1097 261 246 93 43 chr4 67204996 67205136 -88424984 + L1MB4 LINE L1 6034 6180 0 3 1097 193 350 87 0 chr4 67205694 67205797 -88424323 + MIR SINE MIR 2 113 -149 3 1097 2560 97 5 18 chr4 67206188 67206589 -88423531 + L1_Mus3 LINE L1 6243 6638 0 3 1097 21 0 0 0 chr4 67206809 67206830 -88423290 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 1374 323 35 18 chr4 67208056 67208507 -88421613 + Lx5 LINE L1 6592 7050 0 3 1097 459 0 0 0 chr4 67208787 67208838 -88421282 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1097 211 338 52 0 chr4 67209836 67209913 -88420207 - ID SINE ID -141 83 3 3 1097 344 326 29 36 chr4 67209923 67210063 -88420057 - ID_B1 SINE B4 -2 222 84 3 1097 297 51 0 0 chr4 67211745 67211784 -88418336 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 1097 972 126 7 7 chr4 67211784 67211920 -88418200 - B1_Mus2 SINE Alu -8 139 3 3 1097 280 242 0 0 chr4 67212196 67212258 -88417862 + CT-rich Low_complexity Low_complexity 3 64 0 3 1097 4008 278 49 5 chr4 67212432 67213559 -88416561 + Lx7 LINE L1 5872 7047 -649 3 1097 4682 193 39 8 chr4 67213565 67213931 -88416189 + RMER13B LTR ERVK 1 381 -527 3 1097 2517 102 24 0 chr4 67213931 67214302 -88415818 - L1_Mus3 LINE L1 0 6638 6259 3 1097 4682 193 39 8 chr4 67214302 67214816 -88415304 + RMER13B LTR ERVK 382 908 0 3 1097 1854 255 26 62 chr4 67214828 67215489 -88414631 + Lx7 LINE L1 7060 7696 0 3 1097 212 154 0 0 chr4 67215537 67215576 -88414544 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1097 1242 90 0 0 chr4 67215598 67215776 -88414344 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1097 309 51 0 0 chr4 67215776 67215815 -88414305 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 3 1097 2129 101 3 3 chr4 67216389 67216688 -88413432 - L1_Mus1 LINE L1 -1 6566 6268 3 1097 793 385 40 34 chr4 67216745 67217272 -88412848 - MT2A LTR ERVL -2 531 2 3 1097 1778 277 20 2 chr4 67217826 67218235 -88411885 + Lx6 LINE L1 6868 7283 -177 3 1097 507 272 42 36 chr4 67218465 67218633 -88411487 + Lx6 LINE L1 7290 7458 -2 3 1097 186 284 162 0 chr4 67219438 67219512 -88410608 - MIR SINE MIR -13 249 164 3 1097 500 301 56 43 chr4 67219732 67219965 -88410155 + L1M2 LINE L1 4814 5049 -1094 3 1097 1267 313 76 33 chr4 67219962 67220606 -88409514 + Lx8 LINE L1 6795 7466 -7 3 1097 342 194 0 0 chr4 67220767 67220834 -88409286 + L1MB2 LINE L1 5843 5909 -262 3 1097 292 288 19 9 chr4 67221007 67221034 -88409086 + polypurine Low_complexity Low_complexity 4 32 0 3 1097 914 58 7 21 chr4 67221034 67221175 -88408945 + (GAA)n Simple_repeat Simple_repeat 2 140 0 3 1097 292 288 19 9 chr4 67221175 67221252 -88408868 + polypurine Low_complexity Low_complexity 33 108 0 3 1097 504 249 80 66 chr4 67221277 67221578 -88408542 + L1MA9 LINE L1 5972 6276 -36 3 1097 186 214 35 18 chr4 67221863 67221920 -88408200 - L3 LINE CR1 -214 4275 4218 3 1097 24 0 0 0 chr4 67222159 67222183 -88407937 + AT_rich Low_complexity Low_complexity 1 24 0 3 1097 274 61 20 20 chr4 67222444 67222494 -88407626 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 3 1097 182 250 25 0 chr4 67223345 67223385 -88406735 - MIRb SINE MIR -70 198 158 3 1097 25 0 0 0 chr4 67224425 67224450 -88405670 + AT_rich Low_complexity Low_complexity 1 25 0 3 1097 222 175 0 60 chr4 67226563 67226630 -88403490 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 3 1097 2237 120 50 21 chr4 67226633 67227017 -88403103 - Lx3A LINE L1 -4 6977 6583 3 1097 3193 113 25 10 chr4 67227166 67227650 -88402470 - Lx3A LINE L1 -405 6576 6086 3 1097 201 94 0 0 chr4 67227653 67227685 -88402435 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1097 24 0 0 0 chr4 67227695 67227719 -88402401 + AT_rich Low_complexity Low_complexity 1 24 0 3 1097 400 51 0 33 chr4 67227931 67227992 -88402128 - L1Md_F2 LINE L1 -12 6570 6512 3 1097 265 229 14 0 chr4 67227995 67228065 -88402055 - Lx4A LINE L1 -27 7031 6961 3 1097 1330 118 5 0 chr4 67228061 67228256 -88401864 + Lx4A LINE L1 6276 6471 -587 3 1097 2299 145 39 13 chr4 67228315 67228777 -88401343 + L1_Mur1 LINE L1 3521 3994 -1892 3 1097 330 370 16 0 chr4 67230537 67230664 -88399456 - Lx8 LINE L1 -174 7299 7171 3 1097 496 183 7 7 chr4 67231027 67231170 -88398950 + (TA)n Simple_repeat Simple_repeat 1 143 0 3 1097 362 349 24 0 chr4 67232901 67233027 -88397093 + RSINE1 SINE B4 5 133 -32 3 1097 347 282 37 55 chr4 67233133 67233242 -88396878 + RSINE1 SINE B4 59 165 0 3 1097 26 30 0 0 chr4 67233245 67233278 -88396842 + AT_rich Low_complexity Low_complexity 1 33 0 3 1097 596 333 15 20 chr4 67234266 67234462 -88395658 - B3A SINE B2 -2 196 2 3 1097 432 309 156 110 chr4 67236790 67236895 -88393225 + Lx6 LINE L1 6571 6674 -376 3 1097 1083 75 0 0 chr4 67236895 67237041 -88393079 + B1_Mm SINE Alu 2 147 0 3 1097 546 309 152 107 chr4 67237041 67237383 -88392737 + Lx6 LINE L1 6675 7272 -188 3 1097 882 54 0 0 chr4 67237383 67237495 -88392625 + (GAAA)n Simple_repeat Simple_repeat 4 115 0 3 1097 830 308 98 17 chr4 67237554 67237901 -88392219 - MTE2b LTR MaLR -4 375 1 3 1097 662 146 16 0 chr4 67237901 67238024 -88392096 + (CATA)n Simple_repeat Simple_repeat 3 127 0 3 1097 24 32 0 0 chr4 67238460 67238491 -88391629 + AT_rich Low_complexity Low_complexity 1 31 0 3 1097 35 0 0 0 chr4 67238532 67238567 -88391553 + AT_rich Low_complexity Low_complexity 1 35 0 3 1097 306 16 30 60 chr4 67239097 67239164 -88390956 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 3 1097 1038 116 0 0 chr4 67239165 67239311 -88390809 - B1_Mm SINE Alu 0 147 2 3 1098 187 189 0 51 chr4 67241308 67241347 -88388773 - L2c LINE L2 -12 3375 3339 3 1098 243 0 0 0 chr4 67241864 67241891 -88388229 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1098 492 18 0 0 chr4 67241891 67241947 -88388173 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1098 7864 55 1 3 chr4 67242149 67243133 -88386987 - L1Md_F2 LINE L1 -14 6568 5587 3 1098 334 87 0 0 chr4 67243139 67243185 -88386935 + L1_Mm LINE L1 5400 5445 -438 3 1098 5677 77 5 36 chr4 67243461 67244272 -88385848 - L1_Mus2 LINE L1 0 6566 5781 3 1098 265 73 0 47 chr4 67244272 67244315 -88385805 - L1_Mus2 LINE L1 -959 5677 5637 3 1098 1759 162 3 0 chr4 67244994 67245291 -88384829 + Lx LINE L1 6357 6654 0 3 1098 200 139 0 27 chr4 67245629 67245666 -88384454 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1098 768 32 0 0 chr4 67245667 67245762 -88384358 + (TG)n Simple_repeat Simple_repeat 1 95 0 3 1098 228 392 35 40 chr4 67248167 67248340 -88381780 + Lx8 LINE L1 7089 7260 -213 3 1098 333 0 0 0 chr4 67249542 67249579 -88380541 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1098 529 318 23 19 chr4 67249932 67250147 -88379973 + B3 SINE B2 1 216 0 3 1098 259 327 43 17 chr4 67250599 67250714 -88379406 + MIRb SINE MIR 127 244 -24 3 1098 423 0 0 0 chr4 67252186 67252233 -88377887 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 1098 4735 36 0 0 chr4 67252958 67253518 -88376602 + L1Md_T LINE L1 6022 6581 -1 3 1098 336 127 0 0 chr4 67253520 67253575 -88376545 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1098 3570 60 2 0 chr4 67253764 67254216 -88375904 - L1Md_F2 LINE L1 -14 6568 6116 3 1098 23 0 0 0 chr4 67254371 67254394 -88375726 + AT_rich Low_complexity Low_complexity 1 23 0 3 1098 676 337 65 8 chr4 67254501 67254764 -88375356 + B4 SINE B4 7 284 -8 3 1098 318 226 0 0 chr4 67254782 67254888 -88375232 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1098 22 0 0 0 chr4 67255274 67255296 -88374824 + AT_rich Low_complexity Low_complexity 1 22 0 3 1098 1022 322 65 15 chr4 67255811 67256289 -88373831 + Lx8 LINE L1 6653 7158 -315 3 1098 296 263 91 100 chr4 67256680 67256790 -88373330 + MT2B LTR ERVL 156 264 -337 3 1098 535 236 23 8 chr4 67256696 67256824 -88373296 + B1_Mus1 SINE Alu 19 148 0 3 1098 669 101 0 60 chr4 67256894 67256927 -88373193 + L1_Mur1 LINE L1 4703 4735 -1151 3 1098 213 65 0 0 chr4 67256927 67256958 -88373162 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1098 669 101 0 60 chr4 67256958 67257040 -88373080 + L1_Mur1 LINE L1 4736 4811 -1075 3 1098 595 157 16 24 chr4 67257014 67257138 -88372982 + Lx3B LINE L1 5974 6096 -877 3 1098 201 129 0 0 chr4 67257342 67257373 -88372747 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1098 3900 218 55 46 chr4 67257451 67258716 -88371404 + L1_Mur3 LINE L1 2610 3885 -1995 3 1098 363 136 0 0 chr4 67258718 67258777 -88371343 + (GAA)n Simple_repeat Simple_repeat 2 60 0 3 1098 308 193 0 0 chr4 67258779 67258836 -88371284 + L1_Mur3 LINE L1 3878 3934 -1946 3 1098 1423 210 29 3 chr4 67258871 67259187 -88370933 + L1_Mur3 LINE L1 4918 5241 -639 3 1098 591 310 30 10 chr4 67259592 67259794 -88370326 + B3 SINE B2 10 215 -1 3 1098 3756 77 77 2 chr4 67260874 67261405 -88368715 + Lx3_Mus LINE L1 6431 7001 -8 3 1098 615 55 55 0 chr4 67261454 67261563 -88368557 + (GA)n Simple_repeat Simple_repeat 1 115 0 3 1098 207 0 0 0 chr4 67261780 67261803 -88368317 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1098 21 36 0 0 chr4 67261997 67262025 -88368095 + AT_rich Low_complexity Low_complexity 1 28 0 3 1098 353 320 6 0 chr4 67262523 67262679 -88367441 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 1098 218 276 0 45 chr4 67262604 67262714 -88367406 + (CATA)n Simple_repeat Simple_repeat 4 108 0 3 1098 306 0 0 0 chr4 67262717 67262751 -88367369 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1098 350 326 53 13 chr4 67263682 67263909 -88366211 + MER99 DNA hAT? 6 241 -590 3 1098 258 305 11 0 chr4 67264546 67264641 -88365479 + (TATATG)n Simple_repeat Simple_repeat 5 100 0 3 1098 405 31 0 15 chr4 67264679 67264744 -88365376 - L1Md_F3 LINE L1 -1 6583 6520 3 1098 736 59 0 0 chr4 67264744 67264845 -88365275 + L1Md_F3 LINE L1 6434 6534 -50 3 1098 247 294 19 71 chr4 67265003 67265157 -88364963 - MER2 DNA MER2_type -107 238 93 3 1098 26 30 0 0 chr4 67266145 67266178 -88363942 + AT_rich Low_complexity Low_complexity 1 33 0 4 1098 190 324 45 54 chr4 67266680 67266791 -88363329 + L2 LINE L2 2857 2966 -453 4 1098 219 244 23 47 chr4 67266881 67266967 -88363153 + CT-rich Low_complexity Low_complexity 3 86 0 4 1098 773 181 14 7 chr4 67267060 67267205 -88362915 + RMER10A LTR ERVL 297 442 0 4 1098 6087 69 4 4 chr4 67267251 67268050 -88362070 + L1Md_F2 LINE L1 5772 6570 -12 4 1098 403 293 47 47 chr4 67268053 67268225 -88361895 - Lx9 LINE L1 -709 6935 6764 4 1098 3547 165 9 66 chr4 67268240 67268921 -88361199 + RLTR26 LTR ERVK 1 642 0 4 1098 3498 139 2 6 chr4 67268921 67269242 -88360878 + MERVK26-int LTR ERVK 1120 1441 -5478 4 1098 234 0 0 0 chr4 67269242 67269268 -88360852 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1098 3498 139 2 6 chr4 67269268 67269461 -88360659 + MERVK26-int LTR ERVK 1442 1632 -5287 4 1098 380 182 0 0 chr4 67269461 67269527 -88360593 - RLTR26 LTR ERVK -576 66 1 4 1098 682 289 91 12 chr4 67269563 67269815 -88360305 - Lx9 LINE L1 -955 6689 6418 4 1098 241 302 119 37 chr4 67270170 67270346 -88359774 - MIRb SINE MIR -15 253 61 4 1098 2074 265 25 77 chr4 67272164 67272842 -88357278 + Lx6 LINE L1 6561 7203 -257 4 1098 351 88 62 0 chr4 67272853 67272933 -88357187 + (TTTTG)n Simple_repeat Simple_repeat 2 86 0 4 1098 329 265 102 0 chr4 67273461 67273583 -88356537 + MTEa LTR MaLR 246 378 -1 4 1098 22 0 0 0 chr4 67274332 67274354 -88355766 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 486 331 28 6 chr4 67275001 67275180 -88354940 - B4A SINE B4 -86 206 24 4 1098 369 286 93 46 chr4 67276249 67276453 -88353667 + L1MB8 LINE L1 5958 6166 -12 4 1098 1093 301 101 10 chr4 67276684 67277080 -88353040 - Lx8 LINE L1 -353 7120 6689 4 1098 189 0 0 0 chr4 67277911 67277932 -88352188 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1098 575 313 93 28 chr4 67278835 67279205 -88350915 + MTD LTR MaLR 1 386 -14 4 1098 8445 112 32 23 chr4 67279229 67281548 -88348572 + Lx3A LINE L1 4654 6981 0 4 1098 204 40 0 0 chr4 67281559 67281584 -88348536 + (ATG)n Simple_repeat Simple_repeat 3 27 0 4 1098 1669 234 24 45 chr4 67281845 67282276 -88347844 + MTD LTR MaLR 2 403 -16 4 1098 287 218 155 0 chr4 67282286 67282366 -88347754 - RSINE1 SINE B4 -201 91 2 4 1098 186 364 42 8 chr4 67282699 67282818 -88347302 - MER5A DNA MER1_type -44 145 23 4 1098 440 281 15 69 chr4 67283410 67283540 -88346580 + RSINE1 SINE B4 2 124 -41 4 1098 361 213 83 9 chr4 67283937 67284073 -88346047 - RMER1C Other Other -4 1338 1249 4 1098 1959 314 37 33 chr4 67284081 67284918 -88345202 - RMER1C Other Other -116 1226 146 4 1098 403 218 20 13 chr4 67284998 67285147 -88344973 + (TA)n Simple_repeat Simple_repeat 2 151 0 4 1098 763 171 57 7 chr4 67285396 67285537 -88344583 - RMER19B LTR ERVK 0 902 755 4 1098 703 71 0 0 chr4 67285537 67285635 -88344485 - L1_Mus1 LINE L1 -598 5969 5872 4 1098 263 88 0 0 chr4 67285629 67285663 -88344457 + L1_Mus1 LINE L1 6358 6391 -176 4 1098 498 119 0 0 chr4 67285689 67285773 -88344347 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 4 1098 2059 135 3 59 chr4 67285812 67286150 -88343970 + ORR1A2 LTR MaLR 1 319 -8 4 1098 756 213 16 209 chr4 67286149 67286398 -88343722 - RMER19B LTR ERVK -691 211 11 4 1098 362 292 6 100 chr4 67286945 67287105 -88343015 - MER20 DNA MER1_type -25 194 50 4 1098 1377 271 21 81 chr4 67288854 67289335 -88340785 - RMER15 LTR ERVL -82 493 42 4 1098 803 76 336 7 chr4 67289657 67289803 -88340317 + B2_Mm2 SINE B2 2 195 0 4 1098 3469 140 15 20 chr4 67289857 67290462 -88339658 - Lx3_Mus LINE L1 -8 7001 6400 4 1098 320 354 12 104 chr4 67290568 67290905 -88339215 + L1M5 LINE L1 5402 5707 -466 4 1098 388 293 55 40 chr4 67291049 67291248 -88338872 + B3 SINE B2 1 202 -14 4 1098 441 0 0 0 chr4 67291290 67291339 -88338781 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1098 256 377 48 18 chr4 67292102 67292267 -88337853 + MIR SINE MIR 23 192 -70 4 1098 422 322 26 31 chr4 67292375 67292734 -88337386 - L1MB5 LINE L1 -52 6132 5766 4 1098 573 15 0 0 chr4 67294195 67294261 -88335859 + (CAG)n Simple_repeat Simple_repeat 1 66 0 4 1098 342 366 98 36 chr4 67294672 67295122 -88334998 - L2a LINE L2 -15 3411 2934 4 1098 284 323 30 8 chr4 67295156 67295290 -88334830 - L1ME1 LINE L1 -9 6170 6034 4 1098 471 330 75 30 chr4 67295500 67295900 -88334220 - L1ME1 LINE L1 -415 5764 5347 4 1098 370 270 58 26 chr4 67295983 67296139 -88333981 + Lx8 LINE L1 6350 6510 -963 4 1098 186 150 0 0 chr4 67296158 67296198 -88333922 + (CAA)n Simple_repeat Simple_repeat 1 40 0 4 1098 1056 79 0 0 chr4 67296295 67296460 -88333660 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 4 1098 1056 60 0 0 chr4 67296461 67296595 -88333525 - B1_Mus1 SINE Alu 0 148 15 4 1098 613 326 166 24 chr4 67296602 67297186 -88332934 + Lx9 LINE L1 6796 7462 -182 4 1098 288 188 0 0 chr4 67297241 67297310 -88332810 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1098 378 0 0 0 chr4 67297470 67297512 -88332608 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1098 241 281 173 11 chr4 67297519 67297606 -88332514 - B3A SINE B2 -42 156 54 4 1098 35 24 0 0 chr4 67298281 67298323 -88331797 + AT_rich Low_complexity Low_complexity 1 42 0 4 1098 2321 119 144 21 chr4 67298336 67298765 -88331355 + RLTR45 LTR ERVK 1 482 0 4 1098 30 77 0 0 chr4 67298883 67298948 -88331172 + AT_rich Low_complexity Low_complexity 1 65 0 4 1098 3354 233 14 33 chr4 67299348 67300454 -88329666 - Lx5 LINE L1 -599 6451 5358 4 1098 8429 181 141 22 chr4 67300485 67303397 -88326723 - Lx3B LINE L1 0 6973 3636 4 1098 3497 186 70 72 chr4 67303401 67304657 -88325463 - Lx3B LINE L1 -3628 2249 939 4 1098 203 22 20 98 chr4 67304657 67304708 -88325412 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1098 1739 204 33 0 chr4 67304731 67305134 -88324986 - Lx4A LINE L1 0 7058 6618 4 1098 1881 198 50 62 chr4 67305134 67305614 -88324506 + RMER17A-int LTR ERVK 1222 1695 -33 4 1098 987 249 155 65 chr4 67305638 67305781 -88324339 + RMER17B LTR ERVK 1 161 -745 4 1098 240 100 0 0 chr4 67305781 67305821 -88324299 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1098 1343 208 72 54 chr4 67305821 67306238 -88323882 + RMER17B LTR ERVK 146 604 -302 4 1098 556 260 139 0 chr4 67306247 67306420 -88323700 - Lx9 LINE L1 -374 7270 7074 4 1098 1062 293 70 38 chr4 67306426 67306852 -88323268 + RMER13B LTR ERVK 460 899 -9 4 1098 1512 214 40 3 chr4 67306864 67307188 -88322932 - Lx4A LINE L1 -438 6620 6285 4 1098 23 0 0 0 chr4 67307516 67307539 -88322581 + GC_rich Low_complexity Low_complexity 1 23 0 4 1098 2254 263 52 6 chr4 67307655 67308287 -88321833 - Lx9 LINE L1 -299 7345 6685 4 1098 315 0 0 0 chr4 67308380 67308415 -88321705 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1098 312 27 0 0 chr4 67308415 67308451 -88321669 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1098 22 0 0 0 chr4 67308471 67308493 -88321627 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 220 325 38 0 chr4 67309400 67309480 -88320640 + BC1_Mm scRNA scRNA 11 93 -59 4 1098 15007 174 66 7 chr4 67310956 67314037 -88316083 - Lx2B LINE L1 -7 6993 3599 4 1098 2037 56 111 0 chr4 67314037 67314325 -88315795 - RLTR46 LTR ERVK 0 320 1 4 1098 15007 199 97 9 chr4 67314325 67315962 -88314158 - Lx2B LINE L1 -2288 3598 1923 4 1098 923 215 62 16 chr4 67315959 67316260 -88313860 - L1_Mur1 LINE L1 -2555 3292 2964 4 1098 22054 83 199 7 chr4 67316237 67319567 -88310553 - L1Md_F2 LINE L1 -402 6180 1975 4 1098 207 69 0 0 chr4 67319567 67319596 -88310524 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1098 22054 115 134 35 chr4 67319596 67321208 -88308912 - L1Md_F2 LINE L1 -3909 1974 371 4 1098 4674 218 51 8 chr4 67321224 67322293 -88307827 - RMER12B LTR ERVK -288 1116 2 4 1098 411 21 0 0 chr4 67322571 67322619 -88307501 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1098 552 138 0 0 chr4 67323642 67323758 -88306362 + (TC)n Simple_repeat Simple_repeat 2 117 0 4 1098 180 0 0 0 chr4 67323881 67323901 -88306219 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1098 259 306 116 11 chr4 67324447 67324715 -88305405 + Lx9 LINE L1 7316 7611 -33 4 1098 813 93 8 0 chr4 67324727 67324845 -88305275 + B1_Mus1 SINE Alu 25 143 -5 4 1098 22 0 0 0 chr4 67324899 67324921 -88305199 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 288 152 0 0 chr4 67324992 67325058 -88305062 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1098 22 0 0 0 chr4 67325158 67325180 -88304940 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 492 174 0 0 chr4 67325186 67325278 -88304842 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1098 3953 209 14 21 chr4 67325505 67326248 -88303872 + Lx6 LINE L1 5013 5759 -121 4 1098 2001 142 6 56 chr4 67326248 67326590 -88303530 - ORR1A2 LTR MaLR -2 325 1 4 1098 3953 219 13 39 chr4 67326590 67326836 -88303284 + Lx6 LINE L1 5760 5991 -1469 4 1098 1737 240 129 8 chr4 67326821 67327308 -88302812 + Lx6 LINE L1 6440 6985 -475 4 1098 239 0 0 31 chr4 67327594 67327626 -88302494 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1098 2460 57 13 0 chr4 67328107 67328425 -88301695 + L1Md_F2 LINE L1 6261 6582 0 4 1098 3814 186 33 1 chr4 67330856 67331578 -88298542 - Lx2B LINE L1 -7 6993 6249 4 1098 31 58 0 0 chr4 67332715 67332767 -88297353 + AT_rich Low_complexity Low_complexity 1 52 0 4 1098 1106 268 94 3 chr4 67333995 67334283 -88295837 + Lx5 LINE L1 6669 6982 -68 4 1098 461 17 0 17 chr4 67334290 67334349 -88295771 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 4 1098 639 144 0 0 chr4 67336367 67336478 -88293642 + (TC)n Simple_repeat Simple_repeat 2 112 0 4 1098 4808 116 20 94 chr4 67336490 67337448 -88292672 + RMER17D LTR ERVK 1 887 -2 4 1098 651 285 73 0 chr4 67337832 67338011 -88292109 - MTD LTR MaLR -209 210 19 4 1098 303 369 30 37 chr4 67339099 67339332 -88290788 - MIRb SINE MIR -15 253 16 4 1098 190 307 64 39 chr4 67339951 67340029 -88290091 - L3 LINE CR1 -1586 2903 2824 4 1098 216 0 0 0 chr4 67340132 67340156 -88289964 + (CAT)n Simple_repeat Simple_repeat 1 24 0 4 1098 26 0 0 0 chr4 67340733 67340759 -88289361 + AT_rich Low_complexity Low_complexity 1 26 0 5 1098 216 349 39 91 chr4 67340787 67341028 -88289092 + MIRc SINE MIR 35 262 0 5 1098 369 0 0 0 chr4 67341101 67341142 -88288978 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1098 2164 202 23 10 chr4 67341594 67341741 -88288379 - L1_Mur2 LINE L1 -174 5703 5558 5 1098 2153 76 3 23 chr4 67341741 67342051 -88288069 - L1Md_F2 LINE L1 0 6582 6279 5 1098 2164 202 23 10 chr4 67342051 67342383 -88287737 - L1_Mur2 LINE L1 -320 5557 5218 5 1098 4766 272 37 8 chr4 67342380 67343650 -88286470 + Lx5 LINE L1 5739 7045 -5 5 1098 268 312 71 31 chr4 67343922 67344147 -88285973 - L1MA6 LINE L1 -68 6232 5999 5 1098 1147 130 143 5 chr4 67344712 67344928 -88285192 - L1_Mm LINE L1 -386 5497 5252 5 1098 890 34 8 17 chr4 67344960 67345079 -88285041 - B1_Mus1 SINE Alu -1 147 30 5 1098 776 131 23 8 chr4 67345079 67345210 -88284910 - L1_Mur3 LINE L1 -620 5257 5125 5 1098 6332 125 42 16 chr4 67345211 67346211 -88283909 + Lx LINE L1 5507 6518 -136 5 1098 315 0 0 0 chr4 67346211 67346246 -88283874 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1098 6332 121 43 17 chr4 67346246 67346360 -88283760 + Lx LINE L1 6519 6648 -6 5 1098 3518 205 179 35 chr4 67346504 67347377 -88282743 - L1_Mur3 LINE L1 -1133 4747 3737 5 1098 387 60 0 0 chr4 67347377 67347427 -88282693 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1098 3518 205 179 35 chr4 67347427 67347737 -88282383 - L1_Mur3 LINE L1 -2144 3736 3395 5 1098 4283 224 95 38 chr4 67347737 67348894 -88281226 + Lx7 LINE L1 4754 5971 -1725 5 1098 333 68 0 0 chr4 67348894 67348938 -88281182 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1098 4283 269 41 23 chr4 67348938 67350044 -88280076 + Lx7 LINE L1 5972 7102 -594 5 1098 430 190 19 39 chr4 67350044 67350148 -88279972 + RLTR17 LTR ERVK 1 102 -590 5 1098 1045 49 7 14 chr4 67350148 67350276 -88279844 + (TTC)n Simple_repeat Simple_repeat 3 130 0 5 1098 1416 45 0 0 chr4 67350276 67350452 -88279668 + (TCC)n Simple_repeat Simple_repeat 3 178 0 5 1098 1045 49 7 14 chr4 67350452 67350468 -88279652 + (TTC)n Simple_repeat Simple_repeat 2 17 0 5 1098 747 129 0 0 chr4 67350475 67350591 -88279529 - B1_Mus1 SINE Alu -31 117 2 5 1098 3055 202 10 8 chr4 67350591 67351172 -88278948 + RLTR17 LTR ERVK 88 669 -23 5 1098 374 248 12 161 chr4 67351174 67351342 -88278778 + RLTR31A_Mm LTR ERVK 307 449 -135 5 1098 721 294 60 16 chr4 67351396 67351564 -88278556 + Lx7 LINE L1 7087 7259 -437 5 1098 2944 40 3 8 chr4 67351564 67351938 -88278182 + L1Md_F2 LINE L1 6211 6582 0 5 1098 721 294 60 16 chr4 67351938 67352018 -88278102 + Lx7 LINE L1 7260 7345 -351 5 1098 1492 281 56 78 chr4 67352027 67352957 -88277163 + RMER17B LTR ERVK 1 834 -26 5 1098 23 33 0 0 chr4 67352977 67353007 -88277113 + AT_rich Low_complexity Low_complexity 1 30 0 5 1098 402 221 20 52 chr4 67353009 67353111 -88277009 + Lx7 LINE L1 7355 7454 -242 5 1098 273 29 0 0 chr4 67353111 67353145 -88276975 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1098 402 221 20 52 chr4 67353145 67353195 -88276925 + Lx7 LINE L1 7455 7502 -194 5 1098 241 353 355 27 chr4 67353224 67353449 -88276671 + RMER15 LTR ERVL 31 329 -246 5 1098 180 111 0 0 chr4 67353590 67353617 -88276503 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1098 270 115 0 0 chr4 67354263 67354315 -88275805 + (T)n Simple_repeat Simple_repeat 1 52 0 5 1098 1072 101 0 0 chr4 67354315 67354463 -88275657 - B1_Mus1 SINE Alu 0 148 1 5 1098 2692 124 7 2 chr4 67355065 67355484 -88274636 - Lx LINE L1 0 6654 6234 5 1098 570 423 15 4 chr4 67356223 67356496 -88273624 - B4A SINE B4 -1 291 16 5 1098 283 390 56 74 chr4 67356884 67357261 -88272859 + MLT1A LTR MaLR 5 374 0 5 1098 258 56 0 0 chr4 67357404 67357440 -88272680 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1098 27 29 0 0 chr4 67358447 67358481 -88271639 + AT_rich Low_complexity Low_complexity 1 34 0 5 1098 621 306 156 9 chr4 67359009 67359342 -88270778 - Lx8 LINE L1 -209 7264 6883 5 1098 21 0 0 0 chr4 67359929 67359950 -88270170 + AT_rich Low_complexity Low_complexity 1 21 0 5 1098 21 36 0 0 chr4 67361746 67361774 -88268346 + AT_rich Low_complexity Low_complexity 1 28 0 5 1098 188 135 0 26 chr4 67362816 67362854 -88267266 + A-rich Low_complexity Low_complexity 3 39 0 5 1098 947 113 0 13 chr4 67363459 67363612 -88266508 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 5 1098 30 0 0 0 chr4 67364298 67364328 -88265792 + AT_rich Low_complexity Low_complexity 1 30 0 5 1098 209 250 0 0 chr4 67364354 67364394 -88265726 + C-rich Low_complexity Low_complexity 1 40 0 5 1098 1097 89 7 0 chr4 67364394 67364540 -88265580 - B1_Mus2 SINE Alu 0 147 1 5 1098 23893 122 12 25 chr4 67365211 67369917 -88260203 + L1_Mus3 LINE L1 1981 6623 -15 5 1098 673 323 11 70 chr4 67370056 67370329 -88259791 + MTEa LTR MaLR 5 261 -118 5 1098 495 0 0 0 chr4 67370867 67370922 -88259198 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1099 208 28 83 0 chr4 67371982 67372018 -88258102 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1099 1620 192 19 6 chr4 67372229 67372554 -88257566 - Lx3C LINE L1 -2 6974 6646 5 1099 21 36 0 0 chr4 67372860 67372888 -88257232 + AT_rich Low_complexity Low_complexity 1 28 0 5 1099 21 36 0 0 chr4 67372934 67372962 -88257158 + AT_rich Low_complexity Low_complexity 1 28 0 5 1099 1739 182 25 22 chr4 67373445 67373810 -88256310 + Lx2B LINE L1 6250 6615 -385 5 1099 1543 151 92 0 chr4 67373784 67374068 -88256052 + Lx2A1 LINE L1 6695 7004 -4 5 1099 234 0 0 0 chr4 67374193 67374219 -88255901 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1099 667 258 11 16 chr4 67374220 67374405 -88255715 + Lx9 LINE L1 6911 7094 -550 5 1099 219 36 0 0 chr4 67374410 67374438 -88255682 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1099 543 16 0 0 chr4 67374438 67374501 -88255619 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1099 297 300 44 11 chr4 67374502 67374593 -88255527 - B3A SINE B2 -16 182 89 5 1099 687 57 0 0 chr4 67374760 67374848 -88255272 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1099 797 146 36 0 chr4 67375282 67375419 -88254701 - B1_Mus1 SINE Alu -5 143 2 5 1099 1098 85 0 0 chr4 67375446 67375587 -88254533 - B1_Mus1 SINE Alu -6 142 2 5 1099 207 100 0 0 chr4 67376957 67376987 -88253133 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1099 31828 125 28 27 chr4 67377466 67379191 -88250929 + L1Md_F2 LINE L1 208 1966 -3917 5 1099 258 32 0 0 chr4 67379191 67379222 -88250898 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 5 1099 31828 88 5 40 chr4 67379222 67382076 -88248044 + L1Md_F2 LINE L1 1967 4815 -1068 5 1099 458 17 17 0 chr4 67382076 67382135 -88247985 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 5 1099 683 205 6 55 chr4 67382135 67382300 -88247820 - B2_Mm2 SINE B2 -36 159 3 5 1099 31828 77 9 22 chr4 67382300 67384002 -88246118 + L1Md_F2 LINE L1 4816 6528 -54 5 1099 312 409 13 0 chr4 67384552 67384706 -88245414 + MIRb SINE MIR 101 256 -12 5 1099 268 222 0 16 chr4 67385099 67385163 -88244957 - MIRc SINE MIR -21 247 185 5 1099 230 358 160 50 chr4 67385389 67385707 -88244413 - MLT1A0 LTR MaLR -12 353 1 5 1099 303 254 14 0 chr4 67385791 67385862 -88244258 - MLT1B LTR MaLR -6 384 313 5 1099 742 292 13 94 chr4 67386143 67386377 -88243743 - B3 SINE B2 -1 215 1 5 1099 21 0 0 0 chr4 67386480 67386501 -88243619 + AT_rich Low_complexity Low_complexity 1 21 0 5 1099 309 312 84 1 chr4 67387169 67387361 -88242759 + L1M3 LINE L1 5403 5608 -575 5 1099 769 258 144 19 chr4 67387451 67387708 -88242412 + MTE2a LTR MaLR 82 370 -9 5 1099 270 264 121 7 chr4 67387796 67387945 -88242175 + L1M3 LINE L1 5718 5883 -291 5 1099 237 65 0 0 chr4 67388706 67388737 -88241383 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1099 506 118 0 0 chr4 67388804 67388880 -88241240 + URR1B DNA MER1_type 148 223 -2 5 1099 4534 180 9 56 chr4 67391736 67392786 -88237334 + L1_Mur2 LINE L1 3609 4609 -1268 5 1099 2979 136 11 13 chr4 67392784 67393245 -88236875 - Lx LINE L1 -315 6339 5880 5 1099 1484 142 98 17 chr4 67393243 67393530 -88236590 + Lx LINE L1 6345 6654 0 5 1099 2408 180 91 25 chr4 67393509 67393561 -88236559 + L1_Mur2 LINE L1 4586 4630 -1256 5 1099 522 0 0 0 chr4 67393561 67393619 -88236501 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1099 2408 180 91 25 chr4 67393619 67393711 -88236409 + L1_Mur2 LINE L1 4631 4734 -1152 5 1099 747 0 0 0 chr4 67393711 67393794 -88236326 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 5 1099 2408 180 91 25 chr4 67393794 67394218 -88235902 + L1_Mur2 LINE L1 4735 5193 -693 5 1099 437 180 189 0 chr4 67395507 67395629 -88234491 - URR1B DNA MER1_type 0 225 81 5 1099 3942 132 20 2 chr4 67395678 67396283 -88233837 - Lx2 LINE L1 -1 6996 6381 5 1099 1627 123 65 65 chr4 67396285 67396623 -88233497 - Lx2 LINE L1 -781 6216 5879 5 1099 553 311 40 60 chr4 67397069 67397600 -88232520 - L1M2 LINE L1 -1157 4986 4467 5 1099 538 333 29 6 chr4 67397636 67397808 -88232312 - B3A SINE B2 -22 176 1 5 1099 21 0 0 0 chr4 67397969 67397990 -88232130 + AT_rich Low_complexity Low_complexity 1 21 0 5 1099 3117 72 36 0 chr4 67398495 67398910 -88231210 + L1_Mus2 LINE L1 6135 6564 -2 5 1099 257 236 0 41 chr4 67399413 67399510 -88230610 + T-rich Low_complexity Low_complexity 2 94 0 5 1099 246 361 39 73 chr4 67400590 67400769 -88229351 + MER5A DNA MER1_type 17 189 0 5 1099 207 0 0 0 chr4 67401042 67401065 -88229055 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1099 2446 245 55 31 chr4 67401091 67401731 -88228389 + Lx5 LINE L1 6389 7043 -7 5 1099 243 0 0 0 chr4 67402460 67402487 -88227633 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1099 299 96 19 0 chr4 67402487 67402538 -88227582 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1099 196 161 0 51 chr4 67402569 67402628 -88227492 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 5 1099 183 42 0 0 chr4 67402658 67402682 -88227438 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1099 907 141 12 6 chr4 67402873 67403044 -88227076 + CT-rich Low_complexity Low_complexity 4 175 0 5 1099 564 89 0 0 chr4 67403030 67403109 -88227011 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 5 1099 204 40 0 0 chr4 67403111 67403136 -88226984 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 5 1099 521 325 72 50 chr4 67403241 67403643 -88226477 + Lx8 LINE L1 7047 7457 -16 5 1099 315 0 0 0 chr4 67403745 67403780 -88226340 + (CCA)n Simple_repeat Simple_repeat 1 35 0 5 1099 354 74 0 0 chr4 67403780 67403834 -88226286 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 5 1099 1874 302 36 15 chr4 67403892 67404501 -88225619 + Lx8 LINE L1 6335 6956 -517 5 1099 324 339 9 0 chr4 67404501 67404616 -88225504 + (CA)n Simple_repeat Simple_repeat 1 116 0 5 1099 701 317 83 40 chr4 67404617 67404965 -88225155 + Lx8 LINE L1 6970 7332 -141 5 1099 355 307 0 34 chr4 67404983 67405101 -88225019 + CT-rich Low_complexity Low_complexity 1 114 0 6 1099 414 0 0 0 chr4 67405137 67405183 -88224937 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1099 223 53 78 26 chr4 67405279 67405356 -88224764 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 6 1099 222 333 93 50 chr4 67405760 67405921 -88224199 + MIRc SINE MIR 88 255 -13 6 1099 32 26 0 0 chr4 67406199 67406238 -88223882 + AT_rich Low_complexity Low_complexity 1 39 0 6 1099 963 205 22 57 chr4 67406238 67406466 -88223654 - Lx4A LINE L1 -2 7056 6837 6 1099 2007 194 76 2 chr4 67406455 67406848 -88223272 + Lx4A LINE L1 6436 6857 -201 6 1099 699 161 0 0 chr4 67407183 67407363 -88222757 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1099 275 0 0 28 chr4 67407532 67407568 -88222552 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1099 1826 203 34 14 chr4 67407777 67408264 -88221856 + MYSERV16_I-int LTR ERVK 1020 1517 -809 6 1099 2960 127 19 122 chr4 67408264 67408475 -88221645 + RLTR31B_Mm LTR ERVK 1 168 -389 6 1099 1144 68 0 0 chr4 67408475 67408622 -88221498 - B1_Mus1 SINE Alu 0 148 2 6 1099 2960 127 19 122 chr4 67408622 67409031 -88221089 + RLTR31B_Mm LTR ERVK 169 557 0 6 1099 804 74 0 0 chr4 67409057 67409165 -88220955 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 6 1099 4705 108 40 1 chr4 67409165 67409869 -88220251 - L1_Mus3 LINE L1 -2 6636 5906 6 1099 1289 90 5 3 chr4 67409869 67410074 -88220046 + L1_Mus3 LINE L1 5725 5932 -650 6 1099 2666 221 57 19 chr4 67410074 67410818 -88219302 + MYSERV16_I-int LTR ERVK 1554 2325 -1 6 1099 2189 211 79 4 chr4 67410818 67411309 -88218811 + RLTR11A LTR ERVK 1 528 0 6 1099 970 130 0 0 chr4 67411331 67411485 -88218635 + B2_Mm2 SINE B2 1 154 -41 6 1099 408 40 0 0 chr4 67411486 67411536 -88218584 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 6 1099 399 237 57 19 chr4 67411958 67412117 -88218003 + L1M LINE L1 5263 5427 -697 6 1099 195 72 0 67 chr4 67412319 67412364 -88217756 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 6 1099 390 129 0 0 chr4 67412410 67412472 -88217648 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1099 270 0 0 0 chr4 67413329 67413359 -88216761 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1099 4202 117 17 11 chr4 67413506 67414138 -88215982 - Lx3_Mus LINE L1 -44 6965 6330 6 1099 474 312 28 0 chr4 67415209 67415350 -88214770 + RSINE1 SINE B4 2 146 -19 6 1099 1449 196 28 104 chr4 67415423 67415777 -88214343 - ORR1A4 LTR MaLR 0 329 3 6 1099 24 0 0 0 chr4 67417217 67417241 -88212879 + AT_rich Low_complexity Low_complexity 1 24 0 6 1099 216 135 0 0 chr4 67418459 67418496 -88211624 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1099 327 104 0 0 chr4 67418498 67418546 -88211574 + (TATG)n Simple_repeat Simple_repeat 2 49 0 6 1099 244 247 135 73 chr4 67418879 67418975 -88211145 - RMER12 LTR ERVK -508 814 713 6 1099 275 234 0 15 chr4 67420087 67420152 -88209968 + B3A SINE B2 1 64 -134 6 1099 315 0 0 0 chr4 67420238 67420273 -88209847 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1099 405 0 0 0 chr4 67420273 67420317 -88209803 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1099 23 86 0 0 chr4 67420827 67420885 -88209235 + AT_rich Low_complexity Low_complexity 1 58 0 6 1099 1912 95 0 14 chr4 67420912 67421190 -88208930 + L1Md_F2 LINE L1 6254 6527 -55 6 1099 726 280 133 27 chr4 67422091 67422392 -88207728 + MTD LTR MaLR 40 372 -47 6 1099 743 272 85 39 chr4 67422561 67422844 -88207276 + RMER20B LTR ERVK 183 478 -149 6 1099 182 283 33 0 chr4 67423030 67423090 -88207030 + MIR SINE MIR 98 159 -103 6 1099 513 0 0 0 chr4 67423671 67423728 -88206392 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1099 192 40 0 0 chr4 67423728 67423752 -88206368 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1099 372 155 0 0 chr4 67423949 67424020 -88206100 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1099 231 270 0 0 chr4 67424023 67424086 -88206034 - L1MD2 LINE L1 -208 6151 6089 6 1099 186 246 46 0 chr4 67425658 67425723 -88204397 - L3 LINE CR1 -1628 2861 2794 6 1099 896 142 35 0 chr4 67426084 67426225 -88203895 + B1_Mus1 SINE Alu 1 146 -2 6 1099 432 340 87 49 chr4 67426248 67426514 -88203606 + B4A SINE B4 5 280 -12 6 1099 221 196 0 18 chr4 67427087 67427144 -88202976 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 6 1099 28 86 0 0 chr4 67428106 67428176 -88201944 + AT_rich Low_complexity Low_complexity 1 70 0 6 1099 311 241 22 67 chr4 67430960 67431049 -88199071 + MLT1B LTR MaLR 4 88 -302 6 1099 486 0 0 0 chr4 67431060 67431114 -88199006 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1099 6775 60 6 1 chr4 67431114 67431969 -88198151 - L1Md_F2 LINE L1 -23 6559 5701 6 1099 342 257 0 0 chr4 67431973 67432047 -88198073 - Lx3C LINE L1 -701 6275 6202 6 1099 6025 227 54 72 chr4 67432076 67434012 -88196108 - L1_Mm LINE L1 -1369 4514 2614 6 1099 2491 209 8 46 chr4 67434012 67434530 -88195590 + RLTR17 LTR ERVK 195 692 0 6 1099 4097 202 48 41 chr4 67434554 67435625 -88194495 + L1_Mur2 LINE L1 3838 4915 -962 6 1099 3731 137 3 3 chr4 67435633 67436249 -88193871 + L1Md_F3 LINE L1 590 1205 -5519 6 1099 21646 102 46 2 chr4 67436225 67440505 -88189615 + L1Md_F3 LINE L1 1140 6146 -438 6 1099 2221 198 32 31 chr4 67440497 67441442 -88188678 - L1_Mur1 LINE L1 -2163 1749 802 6 1099 679 143 9 0 chr4 67442152 67442264 -88187856 - L1_Mm LINE L1 -323 5560 5448 6 1099 1806 171 51 0 chr4 67442271 67442621 -88187499 - Lx2 LINE L1 -9 6988 6621 6 1099 1738 156 16 0 chr4 67442610 67442924 -88187196 + Lx2A1 LINE L1 6686 7004 -4 6 1099 198 0 0 0 chr4 67443488 67443510 -88186610 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 6 1099 483 18 0 0 chr4 67443759 67443815 -88186305 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 6 1099 376 360 84 48 chr4 67444004 67444339 -88185781 + L2b LINE L2 2973 3319 -56 6 1099 573 211 194 5 chr4 67445007 67445193 -88184927 + URR1A DNA MER1_type 1 221 -5 6 1099 886 276 167 76 chr4 67445195 67445733 -88184387 - MT2B LTR ERVL -14 587 1 6 1099 421 185 74 37 chr4 67445736 67445871 -88184249 - MERVL_2A-int LTR ERVL -3 5758 5619 6 1099 1347 215 108 0 chr4 67445869 67446185 -88183935 - MERVL_2A-int LTR ERVL -71 5690 5341 6 1099 649 179 8 0 chr4 67446191 67446308 -88183812 - MTC-int LTR MaLR -658 600 483 6 1099 697 318 54 54 chr4 67446314 67446590 -88183530 - ORR1E LTR MaLR -24 335 60 6 1099 269 301 146 44 chr4 67447666 67447871 -88182249 - Lx8 LINE L1 -9 7464 7239 6 1099 390 299 43 78 chr4 67447911 67448143 -88181977 - Lx8 LINE L1 -55 7418 7195 6 1099 373 353 47 0 chr4 67448976 67449146 -88180974 - MER5B DNA MER1_type 0 178 1 6 1099 513 47 0 0 chr4 67449541 67449605 -88180515 + (CATA)n Simple_repeat Simple_repeat 2 65 0 6 1099 364 378 58 19 chr4 67449628 67449833 -88180287 - B3A SINE B2 -3 213 1 6 1099 7253 79 10 1 chr4 67449875 67451007 -88179113 - L1Md_F2 LINE L1 -12 6570 5425 6 1099 8012 70 6 4 chr4 67450993 67452075 -88178045 + L1_Mm LINE L1 3757 4840 -1043 6 1099 25 65 0 0 chr4 67452188 67452234 -88177886 + AT_rich Low_complexity Low_complexity 1 46 0 6 1099 1022 84 0 0 chr4 67453514 67453645 -88176475 + B1_Mus2 SINE Alu 5 135 -12 6 1099 451 0 0 33 chr4 67453646 67453707 -88176413 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1099 266 250 0 42 chr4 67454097 67454168 -88175952 + MTD LTR MaLR 352 419 0 6 1099 635 254 15 44 chr4 67454526 67454662 -88175458 + B1_Mur1 SINE Alu 11 142 -7 6 1099 651 156 0 0 chr4 67454676 67454798 -88175322 + GA-rich Low_complexity Low_complexity 1 122 0 6 1099 1167 49 0 0 chr4 67455022 67455166 -88174954 - L1_Mus1 LINE L1 -750 5817 5674 6 1099 1557 105 0 0 chr4 67455166 67455385 -88174735 + L1_Mus1 LINE L1 6349 6567 0 6 1099 1067 64 0 0 chr4 67455680 67455821 -88174299 + L1_Mus1 LINE L1 6427 6567 0 6 1099 232 391 14 35 chr4 67456016 67456159 -88173961 + MIR3 SINE MIR 47 186 -22 6 1099 286 415 0 16 chr4 67456680 67456805 -88173315 - ID_B1 SINE B4 -17 207 85 6 1099 225 108 0 0 chr4 67456961 67456998 -88173122 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1099 429 277 20 33 chr4 67457243 67457396 -88172724 - MER121 Unknown Unknown -158 254 104 6 1099 588 330 68 55 chr4 67457517 67457915 -88172205 - MER67D LTR ERV1 -100 414 12 6 1099 582 28 0 0 chr4 67458080 67458152 -88171968 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1099 342 335 37 18 chr4 67458158 67458322 -88171798 + MIR3 SINE MIR 42 208 0 6 1099 645 114 0 0 chr4 67458531 67458636 -88171484 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1099 261 123 31 54 chr4 67459034 67459163 -88170957 + T-rich Low_complexity Low_complexity 1 126 0 6 1099 200 131 38 82 chr4 67459233 67459416 -88170704 + T-rich Low_complexity Low_complexity 1 175 0 6 1099 348 63 0 130 chr4 67459454 67459654 -88170466 + T-rich Low_complexity Low_complexity 1 174 0 6 1099 524 167 11 0 chr4 67459722 67459812 -88170308 - B1_Mus2 SINE Alu -22 125 35 6 1099 488 135 21 0 chr4 67459915 67460011 -88170109 + CT-rich Low_complexity Low_complexity 3 100 0 6 1099 655 343 78 18 chr4 67460247 67460603 -88169517 + MTD LTR MaLR 11 379 0 6 1099 1240 315 97 67 chr4 67460603 67461422 -88168698 + MTD-int LTR MaLR 1 847 -411 6 1099 5688 51 0 1 chr4 67461436 67462138 -88167982 + L1Md_F2 LINE L1 4886 5586 -297 6 1099 7641 67 6 2 chr4 67462138 67463130 -88166990 + L1Md_F2 LINE L1 5587 6582 0 6 1099 726 328 0 0 chr4 67463280 67463515 -88166605 - Lx9 LINE L1 -215 7429 7195 6 1099 414 0 0 0 chr4 67463547 67463593 -88166527 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1099 255 250 168 23 chr4 67463607 67463738 -88166382 - MTC-int LTR MaLR -108 1150 1001 6 1099 322 267 17 17 chr4 67463810 67463928 -88166192 + CT-rich Low_complexity Low_complexity 1 118 0 6 1099 233 309 10 21 chr4 67463969 67464065 -88166055 + MTD-int LTR MaLR 1138 1232 -26 6 1099 1011 97 21 0 chr4 67464086 67464231 -88165889 + B1_Mus1 SINE Alu 1 148 0 6 1099 195 100 0 0 chr4 67464231 67464261 -88165859 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1099 234 238 208 9 chr4 67464272 67464378 -88165742 + MTD LTR MaLR 277 403 -16 6 1099 342 0 0 0 chr4 67464391 67464429 -88165691 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1099 294 29 0 0 chr4 67464432 67464467 -88165653 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1099 411 379 0 54 chr4 67464482 67464630 -88165490 - RSINE1 SINE B4 0 165 26 7 1099 432 331 14 7 chr4 67464685 67464831 -88165289 - Lx8 LINE L1 -358 7115 6969 7 1099 239 368 147 0 chr4 67465762 67465857 -88164263 - B4A SINE B4 -82 210 102 7 1099 232 330 100 60 chr4 67466877 67466977 -88163143 + RSINE1 SINE B4 26 129 -36 7 1099 468 312 62 25 chr4 67467346 67467507 -88162613 - ID_B1 SINE B4 -57 167 1 7 1099 2037 114 80 0 chr4 67467624 67467948 -88162172 - Lx3_Mus LINE L1 -8 7001 6652 7 1099 231 211 8 26 chr4 67468624 67468741 -88161379 + (TATG)n Simple_repeat Simple_repeat 2 116 0 7 1099 574 127 42 12 chr4 67468726 67468894 -88161226 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 7 1099 434 302 149 6 chr4 67470036 67470207 -88159913 - B3A SINE B2 -6 210 11 7 1099 585 136 0 0 chr4 67471452 67471555 -88158565 + (TG)n Simple_repeat Simple_repeat 1 103 0 7 1099 327 296 49 39 chr4 67472345 67472447 -88157673 + B1_Mur1 SINE Alu 47 149 0 7 1099 24 53 0 0 chr4 67472810 67472848 -88157272 + AT_rich Low_complexity Low_complexity 1 38 0 7 1099 363 78 0 0 chr4 67474404 67474455 -88155665 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1099 321 68 0 0 chr4 67474457 67474501 -88155619 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1099 513 264 83 39 chr4 67474666 67474881 -88155239 - ORR1D2 LTR MaLR 0 359 109 7 1099 7821 131 43 39 chr4 67475119 67476555 -88153565 - Lx3A LINE L1 -5 6976 5538 7 1099 723 145 103 0 chr4 67476559 67476676 -88153444 + Lx3A LINE L1 5405 5533 -353 7 1099 403 338 128 56 chr4 67476691 67477626 -88152494 - L1MD LINE L1 -883 5263 4261 7 1099 318 319 91 37 chr4 67477658 67477899 -88152221 - L1MD LINE L1 -1928 4218 3965 7 1099 787 223 32 11 chr4 67479110 67479296 -88150824 + B2_Mm2 SINE B2 1 190 -5 7 1099 507 236 93 65 chr4 67480229 67480422 -88149698 - MTE-int LTR MaLR -194 1541 1299 7 1099 319 376 15 75 chr4 67480849 67481050 -88149070 + ORR1E LTR MaLR 1 189 -170 7 1099 462 49 0 0 chr4 67481052 67481113 -88149007 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1099 2079 4 0 0 chr4 67481273 67481501 -88148619 - L1Md_T LINE L1 -206 6376 6149 7 1099 1630 10 0 0 chr4 67481501 67481693 -88148427 + L1Md_T LINE L1 6391 6582 0 7 1099 24 53 0 0 chr4 67481728 67481766 -88148354 + AT_rich Low_complexity Low_complexity 1 38 0 7 1099 234 0 0 0 chr4 67481800 67481826 -88148294 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1099 210 158 0 0 chr4 67481884 67481922 -88148198 + A-rich Low_complexity Low_complexity 1 38 0 7 1099 376 325 9 78 chr4 67482999 67483141 -88146979 + B2_Mm2 SINE B2 6 139 -54 7 1099 23 33 0 0 chr4 67483831 67483861 -88146259 + AT_rich Low_complexity Low_complexity 1 30 0 7 1099 255 152 0 0 chr4 67484216 67484262 -88145858 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 7 1099 770 312 15 0 chr4 67485362 67485561 -88144559 - B3 SINE B2 -11 205 4 7 1099 533 307 153 5 chr4 67485605 67485808 -88144312 + Lx5 LINE L1 6807 7039 -11 7 1099 444 182 11 11 chr4 67485858 67485947 -88144173 + RMER13B LTR ERVK 120 208 -700 7 1099 25 0 0 0 chr4 67485976 67486001 -88144119 + AT_rich Low_complexity Low_complexity 1 25 0 7 1099 2908 206 21 45 chr4 67486162 67486870 -88143250 + RMER13B LTR ERVK 218 908 0 7 1099 373 363 6 6 chr4 67486870 67487028 -88143092 - Lx6 LINE L1 -220 7240 7083 7 1099 6910 147 8 3 chr4 67487043 67488771 -88141349 - L1_Mus4 LINE L1 0 6636 4897 7 1099 219 88 0 0 chr4 67488793 67488827 -88141293 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 7 1099 8925 160 14 4 chr4 67488843 67490441 -88139679 + L1_Mur2 LINE L1 3337 4951 -926 7 1099 2131 244 57 2 chr4 67490436 67490945 -88139175 - Lx6 LINE L1 -369 7091 6555 7 1099 7057 83 3 15 chr4 67491543 67492671 -88137449 - L1Md_F2 LINE L1 -12 6570 5462 7 1099 674 132 0 16 chr4 67493898 67494021 -88136099 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 7 1099 23 0 0 0 chr4 67495247 67495270 -88134850 + AT_rich Low_complexity Low_complexity 1 23 0 7 1099 22 0 0 0 chr4 67495296 67495318 -88134802 + AT_rich Low_complexity Low_complexity 1 22 0 7 1099 288 0 0 0 chr4 67495822 67495854 -88134266 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1099 576 0 0 0 chr4 67495854 67495917 -88134203 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1099 249 33 0 0 chr4 67496041 67496071 -88134049 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1099 1219 139 28 5 chr4 67496071 67496287 -88133833 - Lx LINE L1 -15 6639 6419 7 1099 496 311 55 19 chr4 67496312 67496624 -88133496 - L1M2 LINE L1 -1607 4536 4214 7 1099 266 247 13 0 chr4 67496628 67496705 -88133415 + L1P5 LINE L1 5743 5820 -336 7 1099 216 232 0 18 chr4 67496764 67496821 -88133299 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 7 1099 352 326 21 14 chr4 67496951 67497091 -88133029 + B3 SINE B2 1 141 -75 7 1099 233 91 44 22 chr4 67497670 67497715 -88132405 + RLTR40 LTR ERVK 676 721 -96 7 1099 955 94 0 48 chr4 67497838 67497983 -88132137 + B1_Mus1 SINE Alu 1 138 -10 7 1099 905 347 72 11 chr4 67497991 67498600 -88131520 - Lx8 LINE L1 -477 6996 6351 7 1099 2249 16 0 0 chr4 67500379 67500636 -88129484 - L1Md_A LINE L1 0 6582 6326 1 1099 186 43 0 0 chr4 67500767 67500790 -88129330 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1099 1183 94 0 0 chr4 67500790 67500950 -88129170 - B2_Mm1t SINE B2 -33 160 1 3 1099 461 193 44 0 chr4 67501750 67501864 -88128256 + Lx9 LINE L1 7524 7642 -2 4 137 35370 36 1 0 chr4 67502003 67507383 -88122737 + L1Md_T LINE L1 109 5589 -297 5 1100 8968 6 0 0 chr4 67507383 67508379 -88121741 + L1Md_T LINE L1 5590 6585 0 5 1100 280 193 62 135 chr4 67508382 67508421 -88121699 + MTE2a LTR MaLR 291 321 -58 6 1100 1478 79 54 0 chr4 67508421 67508646 -88121474 - L1_Mus1 LINE L1 0 6567 6350 7 1100 280 193 62 135 chr4 67508646 67508701 -88121419 + MTE2a LTR MaLR 322 378 -1 6 1100 3177 95 21 19 chr4 67508821 67509293 -88120827 - L1_Mus1 LINE L1 -1 6566 6094 8 1100 1728 86 355 0 chr4 67509293 67509606 -88120514 + L1_Mm LINE L1 5364 5787 -96 9 1100 2751 135 101 51 chr4 67509607 67509925 -88120195 + L1_Mus1 LINE L1 5270 5587 -296 1 1100 8003 48 1 3 chr4 67509925 67510919 -88119201 + L1Md_F2 LINE L1 5588 6579 -3 1 1100 2751 101 45 19 chr4 67510919 67511359 -88118761 + L1_Mus1 LINE L1 5588 6060 -507 1 1100 313 290 22 7 chr4 67511394 67511575 -88118545 + GA-rich Low_complexity Low_complexity 1 183 0 1 1100 297 393 50 7 chr4 67511697 67511838 -88118282 - B3A SINE B2 -41 157 11 1 1100 1245 259 21 71 chr4 67511838 67512216 -88117904 + RMER1C Other Other 697 1055 -287 1 1100 241 139 0 0 chr4 67512211 67512247 -88117873 - L1_Mus1 LINE L1 -133 6434 6399 1 1100 834 257 62 35 chr4 67512327 67512617 -88117503 + RMER1C Other Other 1034 1331 -11 1 1100 775 45 0 18 chr4 67512779 67512893 -88117227 + (TTC)n Simple_repeat Simple_repeat 3 114 0 1 1100 312 94 0 0 chr4 67512898 67512951 -88117169 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1100 549 88 0 0 chr4 67512980 67513060 -88117060 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1100 264 279 0 0 chr4 67513066 67513127 -88116993 - ID4_ SINE ID -21 62 2 1 1100 258 190 0 0 chr4 67513664 67513722 -88116398 + CT-rich Low_complexity Low_complexity 1 58 0 2 1100 333 333 114 0 chr4 67513747 67513861 -88116259 - B3A SINE B2 -15 183 57 2 1100 22 0 0 0 chr4 67513975 67513997 -88116123 + AT_rich Low_complexity Low_complexity 1 22 0 2 1100 219 69 0 0 chr4 67517010 67517039 -88113081 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1100 1553 174 4 4 chr4 67517230 67517496 -88112624 + L1VL1 LINE L1 1 266 -6156 2 1100 2914 132 64 0 chr4 67517496 67517964 -88112156 + L1Md_F LINE L1 483 980 -5639 2 1100 2283 79 25 6 chr4 67517964 67518283 -88111837 + IAPLTR2b LTR ERVK 1 325 -2 2 1100 8410 97 12 22 chr4 67518285 67519875 -88110245 + L1Md_F LINE L1 860 2530 -3356 2 1100 7511 101 52 5 chr4 67519875 67521525 -88108595 - L1Md_A LINE L1 -3644 2239 510 2 1100 3384 55 0 0 chr4 67521525 67521947 -88108173 + L1Md_F2 LINE L1 6149 6570 -12 2 1100 3107 176 120 14 chr4 67521947 67521987 -88108133 - L1Md_A LINE L1 -6215 509 454 2 1100 6315 78 11 0 chr4 67521993 67522874 -88107246 + L1Md_F LINE L1 3827 4717 -1169 2 1100 511 111 0 0 chr4 67522874 67522964 -88107156 + L1Md_F2 LINE L1 6491 6580 -2 2 1100 304 336 85 124 chr4 67524690 67524843 -88105277 + B3A SINE B2 42 188 -10 3 1100 414 379 51 4 chr4 67525051 67525287 -88104833 + MLT1D LTR MaLR 255 501 -4 3 1100 435 106 0 0 chr4 67525409 67525475 -88104645 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1100 21 0 0 0 chr4 67527533 67527554 -88102566 + AT_rich Low_complexity Low_complexity 1 21 0 3 1100 3518 42 28 0 chr4 67528655 67529079 -88101041 - RLTR10C LTR ERVK 0 436 1 3 1100 2272 185 22 32 chr4 67529467 67529985 -88100135 - Lx5 LINE L1 -974 6076 5564 3 1100 637 277 11 11 chr4 67529986 67530172 -88099948 + Lx5 LINE L1 6857 7042 -8 3 1100 2479 205 27 2 chr4 67530429 67530907 -88099213 - Lx3C LINE L1 -213 6763 6274 3 1100 908 250 69 5 chr4 67530910 67531127 -88098993 + Lx3C LINE L1 6744 6974 -2 3 1100 3023 186 80 0 chr4 67531135 67531930 -88098190 - Lx3C LINE L1 -712 6264 5410 3 1100 227 295 16 16 chr4 67531962 67532024 -88098096 - ID_B1 SINE B4 -65 159 98 3 1100 524 318 17 57 chr4 67532334 67532634 -88097486 + L1_Mur3 LINE L1 3706 3993 -1887 3 1100 1646 264 51 40 chr4 67532645 67533119 -88097001 - RLTR20B1 LTR ERVK 0 563 85 4 1100 620 347 47 30 chr4 67533416 67534093 -88096027 + L1M2 LINE L1 4284 4972 -1171 4 1100 22 80 0 0 chr4 67534122 67534172 -88095948 + AT_rich Low_complexity Low_complexity 1 50 0 4 1100 1116 300 32 7 chr4 67534422 67534701 -88095419 + Lx5 LINE L1 6758 7043 -7 4 1100 643 266 68 44 chr4 67534826 67535344 -88094776 + L1M2 LINE L1 5137 5667 -624 4 1100 231 250 17 0 chr4 67535380 67535440 -88094680 - MTEa LTR MaLR -2 377 317 4 1100 270 0 0 0 chr4 67535697 67535727 -88094393 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1100 414 385 60 44 chr4 67535769 67536312 -88093808 - MTE-int LTR MaLR -241 1339 744 4 1100 235 189 11 32 chr4 67536549 67536609 -88093511 + CT-rich Low_complexity Low_complexity 34 91 0 4 1100 2017 149 3 0 chr4 67536609 67536932 -88093188 + ORR1A2 LTR MaLR 4 327 0 4 1100 235 189 11 32 chr4 67536932 67536964 -88093156 + polypyrimidine Low_complexity Low_complexity 1 33 0 4 1100 309 70 27 53 chr4 67537051 67537126 -88092994 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 5 1100 596 115 0 9 chr4 67537217 67537322 -88092798 - Lx2 LINE L1 -1 6996 6893 5 1100 713 108 20 0 chr4 67537327 67537429 -88092691 + Lx2 LINE L1 6469 6572 -425 5 1100 278 340 36 58 chr4 67537486 67537711 -88092409 - Lx8 LINE L1 -250 7223 7004 5 1100 581 325 47 31 chr4 67537832 67538086 -88092034 - MTE-int LTR MaLR -1183 397 140 4 1100 269 349 9 28 chr4 67538444 67538553 -88091567 - ORR1D1 LTR MaLR -251 123 17 5 1100 342 0 0 0 chr4 67538747 67538785 -88091335 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1100 27 0 0 0 chr4 67538940 67538967 -88091153 + AT_rich Low_complexity Low_complexity 1 27 0 5 1100 3294 138 27 11 chr4 67538971 67539522 -88090598 - Lx3A LINE L1 -10 6971 6412 5 1100 1594 179 14 74 chr4 67539882 67540232 -88089888 + ORR1A4 LTR MaLR 1 329 0 5 1100 7654 194 57 73 chr4 67540232 67542225 -88087895 + ORR1A4-int LTR MaLR 1 1962 -1 5 1100 1785 166 6 63 chr4 67542226 67542574 -88087546 + ORR1A4 LTR MaLR 1 328 -1 5 1100 598 137 176 0 chr4 67542816 67542947 -88087173 + Lx LINE L1 6501 6654 0 5 1100 352 386 20 7 chr4 67543433 67543579 -88086541 - MIR3 SINE MIR -23 185 38 6 1100 630 68 0 0 chr4 67543863 67543951 -88086169 + (TC)n Simple_repeat Simple_repeat 2 89 0 6 1100 271 374 32 16 chr4 67544304 67544429 -88085691 - MLT1A LTR MaLR -57 317 191 6 1100 1105 72 0 0 chr4 67544534 67544673 -88085447 + B1_Mus1 SINE Alu 1 139 -9 6 1100 384 22 0 0 chr4 67544673 67544718 -88085402 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1100 2095 172 164 110 chr4 67544908 67545488 -88084632 + RMER19C LTR ERVK 1 611 0 6 1100 2219 159 7 74 chr4 67547391 67547852 -88082268 - RLTR23 LTR ERV1 0 430 1 6 1100 227 408 20 7 chr4 67548040 67548188 -88081932 - L2a LINE L2 -1 3425 3276 6 1100 1007 251 30 0 chr4 67548210 67548413 -88081707 - MER58A DNA MER1_type -15 209 1 6 1100 234 81 0 0 chr4 67548930 67548967 -88081153 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1100 22 35 0 0 chr4 67549655 67549684 -88080436 + AT_rich Low_complexity Low_complexity 1 29 0 7 1100 30 27 0 0 chr4 67549913 67549950 -88080170 + AT_rich Low_complexity Low_complexity 1 37 0 7 1100 262 45 22 22 chr4 67550009 67550054 -88080066 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1100 26 30 0 0 chr4 67550060 67550093 -88080027 + AT_rich Low_complexity Low_complexity 1 33 0 7 1100 406 377 25 0 chr4 67550177 67550376 -88079744 + Lx6 LINE L1 6522 6725 -735 7 1100 241 314 0 0 chr4 67550647 67550717 -88079403 + GA-rich Low_complexity Low_complexity 4 73 0 7 1100 29 0 0 0 chr4 67551337 67551366 -88078754 + AT_rich Low_complexity Low_complexity 1 29 0 7 1100 21 0 0 0 chr4 67552343 67552364 -88077756 + AT_rich Low_complexity Low_complexity 1 21 0 7 1100 396 0 0 0 chr4 67552439 67552483 -88077637 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1100 314 333 65 56 chr4 67552484 67552700 -88077420 - Lx8 LINE L1 -57 7416 7199 7 1100 373 200 9 43 chr4 67553642 67553757 -88076363 - Lx9 LINE L1 0 7644 7534 8 1100 410 130 29 0 chr4 67553756 67553825 -88076295 + Lx9 LINE L1 7397 7467 -177 8 1100 477 352 22 11 chr4 67554020 67554201 -88075919 + MTE2b LTR MaLR 6 188 -191 8 1100 585 157 0 29 chr4 67554193 67554298 -88075822 + B1_Mus2 SINE Alu 43 144 -3 8 1100 422 293 50 11 chr4 67554336 67554524 -88075596 + MTE2b LTR MaLR 176 377 -2 8 1100 239 349 15 15 chr4 67556440 67556571 -88073549 + GA-rich Low_complexity Low_complexity 3 133 0 8 1100 277 152 15 29 chr4 67557134 67557202 -88072918 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 8 1100 387 0 0 0 chr4 67557435 67557478 -88072642 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1100 8322 140 47 2 chr4 67557933 67558008 -88072112 - L1_Mm LINE L1 -551 5332 5257 8 1100 644 0 13 0 chr4 67558008 67558084 -88072036 + (TA)n Simple_repeat Simple_repeat 1 77 0 8 1100 8322 140 47 2 chr4 67558084 67559423 -88070697 - L1_Mm LINE L1 -627 5256 3857 8 1100 533 305 68 34 chr4 67559482 67559747 -88070373 + RMER5 LTR ERV1 127 400 -134 8 1100 617 325 153 14 chr4 67562219 67562565 -88067555 + MLT1A1 LTR MaLR 13 406 -2 8 1100 333 0 0 0 chr4 67563130 67563167 -88066953 + (TA)n Simple_repeat Simple_repeat 2 38 0 9 1100 375 83 0 0 chr4 67563532 67563592 -88066528 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1100 232 49 0 0 chr4 67563701 67563742 -88066378 - Lx2 LINE L1 -1 6996 6956 9 1100 2841 49 0 71 chr4 67563830 67564223 -88065897 - RLTR10B2 LTR ERVK 0 365 1 9 1100 447 92 0 0 chr4 67565858 67565923 -88064197 + (TC)n Simple_repeat Simple_repeat 1 65 0 9 1100 324 70 0 0 chr4 67566464 67566507 -88063613 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1100 270 0 0 0 chr4 67566592 67566622 -88063498 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1100 782 308 39 72 chr4 67566664 67566783 -88063337 + MTEa LTR MaLR 51 177 -202 9 1100 930 78 35 23 chr4 67566783 67566954 -88063166 + (GGAAA)n Simple_repeat Simple_repeat 3 175 0 9 1100 782 308 39 72 chr4 67566954 67567166 -88062954 + MTEa LTR MaLR 178 371 -8 9 1100 256 258 44 29 chr4 67567299 67567367 -88062753 - PB1 SINE Alu -48 79 11 9 1100 871 331 55 13 chr4 67568520 67568900 -88061220 + MTD LTR MaLR 18 413 -6 1 1100 307 284 116 61 chr4 67569945 67570256 -88059864 - L1MC4a LINE L1 -1828 6054 5727 1 1100 309 331 16 47 chr4 67570855 67571112 -88059008 - L1ME1 LINE L1 -3 6176 5928 1 1100 553 252 56 7 chr4 67571103 67571247 -88058873 - L1ME1 LINE L1 -561 5603 5453 1 1100 255 277 97 19 chr4 67572469 67572572 -88057548 - MIR3 SINE MIR -24 184 74 1 1100 22 35 0 0 chr4 67572612 67572641 -88057479 + AT_rich Low_complexity Low_complexity 1 29 0 1 1100 26 0 0 0 chr4 67572959 67572985 -88057135 + AT_rich Low_complexity Low_complexity 1 26 0 1 1100 262 325 90 41 chr4 67573114 67573236 -88056884 + MER5A1 DNA MER1_type 4 131 -35 1 1100 769 56 93 0 chr4 67574205 67574313 -88055807 + B1_Mus1 SINE Alu 29 146 -2 1 1100 242 29 29 0 chr4 67574314 67574349 -88055771 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1100 285 118 0 0 chr4 67574626 67574677 -88055443 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1100 8435 129 11 11 chr4 67574677 67576156 -88053964 - Lx3A LINE L1 -10 6971 5498 1 1100 23 0 0 0 chr4 67577000 67577023 -88053097 + AT_rich Low_complexity Low_complexity 1 23 0 1 1100 35353 35 1 0 chr4 67577043 67582935 -88047185 + L1Md_T LINE L1 1 5589 -297 1 1100 8884 7 0 6 chr4 67582935 67583965 -88046155 + L1Md_T LINE L1 5590 6585 0 1 1100 297 51 0 0 chr4 67584217 67584256 -88045864 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1100 2762 196 91 10 chr4 67584256 67584881 -88045239 - RMER6C LTR ERVK -9 681 6 1 1100 246 0 0 0 chr4 67584913 67584942 -88045178 + U2 snRNA snRNA 6 34 -154 1 1100 323 311 71 36 chr4 67585421 67585561 -88044559 - MER34A1 LTR ERV1 -311 276 132 1 1100 289 122 56 0 chr4 67585561 67585638 -88044482 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1100 405 0 0 0 chr4 67585638 67585683 -88044437 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1100 289 122 56 0 chr4 67585683 67585695 -88044425 + (TA)n Simple_repeat Simple_repeat 2 13 0 1 1100 1140 62 7 0 chr4 67585841 67585986 -88044134 - B1_Mm SINE Alu 0 147 2 1 1100 532 352 57 5 chr4 67586288 67586482 -88043638 + B4A SINE B4 87 290 -2 1 1100 660 385 25 35 chr4 67587644 67587927 -88042193 + B4A SINE B4 6 285 -7 1 1100 213 39 0 0 chr4 67588105 67588131 -88041989 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1100 32 26 0 0 chr4 67588206 67588245 -88041875 + AT_rich Low_complexity Low_complexity 1 39 0 1 1100 344 261 50 34 chr4 67589456 67589575 -88040545 - Lx9 LINE L1 -206 7438 7318 1 1100 523 252 9 18 chr4 67589597 67589710 -88040410 + B1_Mur3 SINE Alu 27 138 -9 1 1100 481 275 67 1 chr4 67589888 67590035 -88040085 - ID_B1 SINE B4 -25 199 44 1 1100 524 91 11 0 chr4 67590094 67590182 -88039938 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1100 196 131 21 21 chr4 67590181 67590228 -88039892 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1 1100 328 248 54 18 chr4 67590329 67590440 -88039680 - Lx8 LINE L1 -390 7083 6969 1 1100 4785 67 3 9 chr4 67591248 67591881 -88038239 + L1Md_F2 LINE L1 5942 6570 -12 1 1100 267 152 0 0 chr4 67593926 67593972 -88036148 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1 1100 508 351 37 32 chr4 67594856 67595074 -88035046 + B4A SINE B4 42 260 -32 1 1100 25 31 0 0 chr4 67595310 67595342 -88034778 + AT_rich Low_complexity Low_complexity 1 32 0 1 1100 22 56 0 0 chr4 67595385 67595421 -88034699 + AT_rich Low_complexity Low_complexity 1 36 0 1 1100 329 362 28 78 chr4 67595781 67596120 -88034000 - ORR1E LTR MaLR -39 340 1 1 1100 670 254 0 0 chr4 67596258 67596388 -88033732 + B3 SINE B2 1 130 -86 1 1100 320 327 177 23 chr4 67596457 67596801 -88033319 + L1M4 LINE L1 4731 5127 -1019 1 1100 6716 126 21 19 chr4 67596906 67598209 -88031911 - Lx LINE L1 -5 6649 5345 1 1100 243 361 31 100 chr4 67598337 67598497 -88031623 + B4 SINE B4 1 149 -143 1 1100 242 274 29 10 chr4 67598618 67598721 -88031399 + (CATA)n Simple_repeat Simple_repeat 4 108 0 1 1100 22601 40 0 0 chr4 67598744 67602671 -88027449 - L1Md_Gf LINE L1 -1778 4108 85 1 1100 440 145 0 0 chr4 67602670 67602739 -88027381 + L1_Mus2 LINE L1 5630 5698 -868 1 1100 657 315 68 4 chr4 67602741 67602990 -88027130 - MTE-int LTR MaLR -1092 488 224 1 1100 2216 222 35 34 chr4 67602996 67603531 -88026589 + Lx2B LINE L1 6312 6847 -153 1 1100 2135 216 61 4 chr4 67603633 67604089 -88026031 + Lx4A LINE L1 6567 7048 -10 1 1100 4816 134 37 14 chr4 67604154 67605352 -88024768 + L1Md_T LINE L1 208 1427 -4456 1 1100 3867 24 9 0 chr4 67605335 67605796 -88024324 + L1Md_T LINE L1 5122 5586 -297 1 1100 8926 9 0 0 chr4 67605796 67606792 -88023328 + L1Md_T LINE L1 5587 6582 0 1 1100 21 36 0 0 chr4 67606959 67606987 -88023133 + AT_rich Low_complexity Low_complexity 1 28 0 1 1100 784 318 49 49 chr4 67607007 67607472 -88022648 + L1MB2 LINE L1 5491 5965 -206 1 1100 1073 101 0 0 chr4 67607472 67607611 -88022509 + B1_Mus1 SINE Alu 2 140 -8 1 1100 212 0 36 0 chr4 67607611 67607639 -88022481 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1100 784 318 49 49 chr4 67607639 67607801 -88022319 + L1MB2 LINE L1 5966 6118 -53 1 1100 535 293 42 4 chr4 67608177 67608391 -88021729 + Lx8 LINE L1 5615 5809 -38 1 1100 2929 209 112 10 chr4 67608646 67609685 -88020435 - Lx5 LINE L1 -825 6225 5063 1 1100 2651 278 71 14 chr4 67609711 67610447 -88019673 + Lx5 LINE L1 6272 7049 -1 1 1100 769 321 36 27 chr4 67610459 67610824 -88019296 + Lx8 LINE L1 6177 6544 -929 1 1100 463 325 45 0 chr4 67610869 67611023 -88019097 + Lx8 LINE L1 6684 6844 -629 1 1100 23 68 0 0 chr4 67611259 67611303 -88018817 + AT_rich Low_complexity Low_complexity 1 44 0 1 1100 360 64 0 0 chr4 67611733 67611780 -88018340 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1100 290 152 17 0 chr4 67611836 67611895 -88018225 + GA-rich Low_complexity Low_complexity 1 60 0 1 1100 2330 131 6 0 chr4 67613325 67613685 -88016435 + Lx LINE L1 6291 6652 -2 1 1100 191 36 36 0 chr4 67614055 67614083 -88016037 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1100 3579 229 17 18 chr4 67614089 67614868 -88015252 - Lx2B LINE L1 -18 6982 6205 1 1100 324 357 18 0 chr4 67615379 67615491 -88014629 - ID_B1 SINE B4 -3 221 108 1 1100 515 269 30 0 chr4 67615802 67615936 -88014184 + MTE2b LTR MaLR 240 377 -2 1 1100 370 285 75 57 chr4 67616102 67616329 -88013791 + L1MEe LINE L1 258 488 -4366 1 1100 578 289 52 43 chr4 67616499 67616542 -88013578 + ID_B1 SINE B4 56 92 -200 1 1100 451 291 86 36 chr4 67616542 67616681 -88013439 + B1F SINE Alu 4 149 0 1 1100 996 25 0 0 chr4 67616719 67616838 -88013282 + (GA)n Simple_repeat Simple_repeat 1 119 0 1 1100 1866 87 114 14 chr4 67616841 67617131 -88012989 + ORR1A2 LTR MaLR 1 319 -8 1 1100 905 312 10 21 chr4 67617908 67618196 -88011924 - Lx6 LINE L1 -31 7429 7145 1 1100 191 387 32 0 chr4 67618275 67618368 -88011752 + MER5A DNA MER1_type 93 188 -1 1 1100 2162 242 30 19 chr4 67622510 67622619 -88007501 - Lx9 LINE L1 -37 7607 7498 1 1100 2393 137 29 14 chr4 67622619 67623035 -88007085 + BGLII_Mus LTR ERVK 1 422 0 1 1100 2162 242 30 19 chr4 67623035 67623519 -88006601 - Lx9 LINE L1 -147 7497 7008 1 1100 27 0 0 0 chr4 67623527 67623554 -88006566 + AT_rich Low_complexity Low_complexity 1 27 0 1 1100 491 283 76 0 chr4 67623875 67624020 -88006100 - Lx9 LINE L1 -456 7188 7033 1 1100 362 366 12 0 chr4 67624106 67624270 -88005850 - MLT1D LTR MaLR -309 196 31 1 1100 243 0 0 0 chr4 67624522 67624549 -88005571 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1100 707 334 93 29 chr4 67625365 67625750 -88004370 - Lx8 LINE L1 -172 7301 6892 1 1100 260 233 0 16 chr4 67625851 67625912 -88004208 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 1 1100 587 294 42 26 chr4 67626083 67626275 -88003845 - Lx8 LINE L1 -822 6651 6457 1 1100 29 28 0 0 chr4 67626318 67626354 -88003766 + AT_rich Low_complexity Low_complexity 1 36 0 1 1100 3556 145 38 5 chr4 67626593 67627202 -88002918 - Lx LINE L1 -2 6652 6024 1 1100 22 70 0 0 chr4 67627893 67627936 -88002184 + AT_rich Low_complexity Low_complexity 1 43 0 1 1100 2425 268 57 12 chr4 67629295 67629946 -88000174 - Lx5 LINE L1 0 7050 6371 1 1100 4871 121 16 1 chr4 67629949 67630700 -87999420 - Lx3_Mus LINE L1 -1 7008 6247 1 1100 905 117 0 7 chr4 67630702 67630848 -87999272 + Lx3_Mus LINE L1 6095 6239 -770 1 1100 8111 249 75 28 chr4 67630842 67632453 -87997667 - Lx5 LINE L1 -669 6381 4723 1 1100 630 39 0 0 chr4 67632453 67632530 -87997590 + (TTA)n Simple_repeat Simple_repeat 2 78 0 1 137 8111 268 102 47 chr4 67632530 67633431 -87996689 - Lx5 LINE L1 -1164 4722 3793 1 1101 3578 192 13 28 chr4 67633431 67634134 -87995986 - RLTR17 LTR ERVK 0 692 1 1 1101 8111 268 102 47 chr4 67634134 67634417 -87995703 - Lx5 LINE L1 -2094 3792 3386 1 1101 1124 117 0 11 chr4 67634417 67634599 -87995521 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1101 8111 268 102 47 chr4 67634599 67635017 -87995103 - Lx5 LINE L1 -2501 3385 2871 1 1101 1115 90 6 0 chr4 67635017 67635183 -87994937 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 1 1101 8111 268 102 47 chr4 67635183 67636528 -87993592 - Lx5 LINE L1 -3016 2870 1520 1 1101 204 97 0 0 chr4 67636528 67636559 -87993561 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 1101 8111 268 102 47 chr4 67636559 67636789 -87993331 - Lx5 LINE L1 -4367 1519 1334 1 1101 1419 199 76 15 chr4 67636787 67637129 -87992991 - Lx7 LINE L1 -124 5756 5394 1 1101 930 254 45 27 chr4 67637130 67637475 -87992645 + Lx7 LINE L1 5778 6122 -1574 1 1101 227 180 40 0 chr4 67637475 67637525 -87992595 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1101 220 281 0 63 chr4 67637603 67637698 -87992422 + CT-rich Low_complexity Low_complexity 3 91 0 1 1101 450 0 0 0 chr4 67637789 67637839 -87992281 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1101 413 310 20 1 chr4 67638021 67638201 -87991919 + L1MA5A LINE L1 5634 5825 -472 1 1101 355 316 67 11 chr4 67638369 67638548 -87991572 - MER99 DNA hAT? -392 439 251 1 1101 562 316 82 96 chr4 67640798 67641078 -87989042 + B4 SINE B4 17 292 0 1 1101 1173 68 0 0 chr4 67641755 67641901 -87988219 - B1_Mus1 SINE Alu -2 146 1 1 1101 236 274 24 49 chr4 67642071 67642194 -87987926 - L1_Rod LINE L1 -624 5223 5104 1 1101 180 0 0 0 chr4 67642201 67642221 -87987899 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1101 270 0 0 0 chr4 67642225 67642255 -87987865 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1101 21 82 0 0 chr4 67642457 67642506 -87987614 + AT_rich Low_complexity Low_complexity 1 49 0 1 1101 304 146 0 0 chr4 67642648 67642703 -87987417 - Lx4A LINE L1 -686 6372 6318 2 1101 2222 177 56 21 chr4 67642704 67643130 -87986990 + RMER13B LTR ERVK 79 519 -389 2 1101 1008 103 0 0 chr4 67644090 67644226 -87985894 + B1_Mus2 SINE Alu 1 136 -11 2 1101 459 0 0 0 chr4 67644226 67644277 -87985843 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 2 1101 649 322 30 13 chr4 67644759 67644989 -87985131 + RMER15 LTR ERVL 299 532 -43 2 1101 522 31 0 0 chr4 67644990 67645054 -87985066 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1101 422 65 0 16 chr4 67646034 67646097 -87984023 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1101 183 121 17 33 chr4 67646214 67646274 -87983846 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1101 784 226 62 11 chr4 67646530 67646547 -87983573 - B2_Mm2 SINE B2 -6 189 174 2 1101 450 0 0 0 chr4 67646547 67646597 -87983523 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 2 1101 784 226 62 11 chr4 67646597 67646758 -87983362 - B2_Mm2 SINE B2 -22 173 2 2 1101 2830 183 48 2 chr4 67647401 67647981 -87982139 + Lx2 LINE L1 705 1311 -5775 2 1101 10785 188 25 56 chr4 67647991 67649141 -87980979 + Lx2 LINE L1 3486 4677 -1200 2 1101 1075 88 0 26 chr4 67649141 67649293 -87980827 + B1_Mus1 SINE Alu 1 148 0 2 1101 10785 188 25 56 chr4 67649293 67649410 -87980710 + Lx2 LINE L1 4678 4688 -1189 2 1101 207 0 0 0 chr4 67649410 67649433 -87980687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1101 10785 188 25 56 chr4 67649433 67650176 -87979944 + Lx2 LINE L1 4689 5423 -454 2 1101 3332 40 0 0 chr4 67650176 67650572 -87979548 + MTA_Mm LTR MaLR 1 396 0 2 1101 10785 148 31 7 chr4 67650572 67652102 -87978018 + Lx2 LINE L1 5424 6996 -1 2 1101 3048 222 45 12 chr4 67652111 67652772 -87977348 + Lx4A LINE L1 6372 7054 -4 2 1101 26 0 0 0 chr4 67652779 67652805 -87977315 + AT_rich Low_complexity Low_complexity 1 26 0 2 1101 198 0 0 0 chr4 67653811 67653833 -87976287 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1101 628 99 0 73 chr4 67653862 67653930 -87976190 - BC1_Mm scRNA scRNA -51 101 41 2 1101 3392 33 2 0 chr4 67653930 67654325 -87975795 - MTA_Mm LTR MaLR 0 396 1 2 1101 628 99 0 73 chr4 67654325 67654365 -87975755 - BC1_Mm scRNA scRNA -112 40 1 2 1101 963 154 0 0 chr4 67654736 67654905 -87975215 + CT-rich Low_complexity Low_complexity 1 169 0 2 1101 348 185 45 27 chr4 67655000 67655111 -87975009 - Lx9 LINE L1 -33 7611 7499 2 1101 24 77 0 0 chr4 67655345 67655397 -87974723 + AT_rich Low_complexity Low_complexity 1 52 0 2 1101 404 339 39 22 chr4 67656584 67656762 -87973358 + B3A SINE B2 1 181 -17 2 1101 216 342 0 0 chr4 67656763 67656839 -87973281 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1101 12959 97 10 7 chr4 67656991 67659557 -87970563 - L1_Mus3 LINE L1 -7 6631 4053 2 1101 572 319 101 74 chr4 67659556 67659700 -87970420 + Lx9 LINE L1 6826 7003 -641 2 1101 456 51 0 0 chr4 67659700 67659759 -87970361 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1101 572 319 101 74 chr4 67659759 67660050 -87970070 + Lx9 LINE L1 7004 7312 -332 2 1101 362 21 21 0 chr4 67660050 67660097 -87970023 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1101 572 319 101 74 chr4 67660097 67660433 -87969687 + Lx9 LINE L1 7313 7618 -26 2 1101 1453 53 5 16 chr4 67660471 67660664 -87969456 + B2_Mm1t SINE B2 2 192 -1 2 1101 5724 213 24 30 chr4 67662109 67663357 -87966763 + Lx5 LINE L1 5736 6975 -75 2 1101 22 80 0 0 chr4 67663370 67663420 -87966700 + AT_rich Low_complexity Low_complexity 1 50 0 2 1101 2204 94 3 62 chr4 67663424 67663765 -87966355 - ORR1A2 LTR MaLR -2 325 5 2 1101 26 30 0 0 chr4 67664484 67664517 -87965603 + AT_rich Low_complexity Low_complexity 1 33 0 2 1101 324 0 0 0 chr4 67664665 67664701 -87965419 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 2 1101 1580 312 109 20 chr4 67664772 67665560 -87964560 - Lx9 LINE L1 -297 7347 6490 2 1101 8669 137 16 13 chr4 67665568 67667278 -87962842 + Lx2 LINE L1 5274 6986 -11 2 1101 234 330 67 82 chr4 67667501 67667696 -87962424 + RMER13A LTR ERVK 16 207 -653 2 1101 360 337 81 11 chr4 67667664 67667838 -87962282 + RMER20B LTR ERVK 234 419 -208 2 1101 632 285 97 0 chr4 67668187 67668394 -87961726 + Lx9 LINE L1 6312 6538 -1106 2 1101 307 385 30 25 chr4 67669049 67669286 -87960834 - L3 LINE CR1 -291 4198 3961 2 1101 198 103 0 0 chr4 67670096 67670125 -87959995 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1101 234 258 0 83 chr4 67670651 67670723 -87959397 - L1MEf LINE L1 -636 6386 6321 2 1101 21 0 0 0 chr4 67670900 67670921 -87959199 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 874 122 0 49 chr4 67671061 67671225 -87958895 - L1Md_A LINE L1 0 6582 6427 2 1101 418 272 94 14 chr4 67672522 67672810 -87957310 - L1MEf LINE L1 -4501 2601 2233 2 1101 393 300 27 9 chr4 67673521 67673632 -87956488 + RMER1A Other Other 57 169 -861 2 1101 34 24 0 0 chr4 67673788 67673829 -87956291 + AT_rich Low_complexity Low_complexity 1 41 0 2 1101 5117 98 27 12 chr4 67673875 67674647 -87955473 - L1_Mus3 LINE L1 -8 6630 5847 2 1101 184 388 42 25 chr4 67674893 67675012 -87955108 - L2 LINE L2 -2128 1291 1171 2 1101 539 79 0 0 chr4 67677788 67677864 -87952256 + L1_Mus2 LINE L1 6490 6565 -1 2 1101 227 215 35 81 chr4 67678398 67678484 -87951636 + MER82 DNA MER2_type 282 363 -290 2 1101 298 274 67 27 chr4 67678745 67678820 -87951300 + B4A SINE B4 1 78 -214 2 1101 744 43 0 0 chr4 67678883 67678975 -87951145 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 2 1101 189 0 0 0 chr4 67678978 67678999 -87951121 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1101 412 346 20 76 chr4 67679020 67679188 -87950932 + B4A SINE B4 107 272 -20 2 1101 393 22 0 0 chr4 67679188 67679234 -87950886 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1101 412 346 20 76 chr4 67679234 67679262 -87950858 + B4A SINE B4 273 292 0 2 1101 514 183 8 8 chr4 67679528 67679649 -87950471 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 1101 370 321 18 9 chr4 67680725 67680838 -87949282 + PB1D10 SINE Alu 1 114 -3 2 1101 555 161 45 0 chr4 67682152 67682264 -87947856 - URR1B DNA MER1_type -1 224 108 2 1101 21 0 0 0 chr4 67682400 67682421 -87947699 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 21 0 0 0 chr4 67682555 67682576 -87947544 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 404 354 32 32 chr4 67682823 67683106 -87947014 - L3 LINE CR1 -192 4297 4015 2 1101 307 280 180 55 chr4 67683108 67683308 -87946812 - Lx9 LINE L1 -561 7083 6859 2 1101 216 0 0 0 chr4 67683352 67683376 -87946744 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1101 8319 34 2 1 chr4 67684521 67685797 -87944323 - L1Md_T LINE L1 0 6582 5306 2 1101 767 315 75 49 chr4 67686525 67687032 -87943088 + Lx8 LINE L1 6009 6528 -945 2 1101 243 394 0 0 chr4 67687520 67687624 -87942496 - MER5B DNA MER1_type -49 129 26 2 1101 1995 109 0 77 chr4 67687910 67688248 -87941872 - L1_Mus2 LINE L1 0 6566 6255 2 1101 469 318 134 0 chr4 67688836 67689015 -87941105 - Lx8 LINE L1 -260 7213 7011 2 1101 186 43 0 0 chr4 67689020 67689043 -87941077 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1101 220 306 22 56 chr4 67689062 67689152 -87940968 + B3A SINE B2 2 88 -110 2 1101 27 29 0 0 chr4 67689158 67689192 -87940928 + AT_rich Low_complexity Low_complexity 1 34 0 2 1101 380 337 84 0 chr4 67689192 67689370 -87940750 - Lx8 LINE L1 -459 7014 6822 2 1101 32 43 0 0 chr4 67691155 67691201 -87938919 + AT_rich Low_complexity Low_complexity 1 46 0 2 1101 527 365 4 4 chr4 67691347 67691600 -87938520 + Lx9 LINE L1 7208 7460 -184 2 1101 1156 145 4 92 chr4 67691847 67692097 -87938023 + Lx3A LINE L1 6746 6973 -8 2 1101 344 398 144 11 chr4 67692110 67692298 -87937822 + B4 SINE B4 80 292 0 2 1101 237 288 59 67 chr4 67692541 67692660 -87937460 + MIRm SINE MIR 37 154 -122 2 1101 254 250 181 0 chr4 67693491 67693563 -87936557 - ORSL DNA Tip100 -190 85 1 2 1101 410 332 213 10 chr4 67694060 67694267 -87935853 - L3 LINE CR1 -975 3514 3266 2 1101 730 323 83 41 chr4 67694407 67694599 -87935521 + MTE2b LTR MaLR 12 208 -171 2 1101 564 53 0 0 chr4 67694599 67694675 -87935445 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 1101 730 323 83 41 chr4 67694675 67694821 -87935299 + MTE2b LTR MaLR 209 363 -16 2 1101 3222 70 0 11 chr4 67696329 67696800 -87933320 - L1Md_F2 LINE L1 0 6582 6140 2 1101 859 66 8 0 chr4 67696800 67696922 -87933198 - B1_Mm SINE Alu -21 126 4 2 1101 378 0 0 0 chr4 67697498 67697540 -87932580 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1101 516 32 0 0 chr4 67697628 67697690 -87932430 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1101 291 299 62 16 chr4 67697708 67697837 -87932283 + L1MA10 LINE L1 6185 6319 -15 2 1101 3885 56 0 2 chr4 67698292 67698776 -87931344 - L1Md_F3 LINE L1 -9 6575 6093 2 1101 1838 48 4 0 chr4 67698913 67699143 -87930977 + L1Md_F2 LINE L1 6340 6570 -12 2 1101 207 0 0 0 chr4 67699149 67699172 -87930948 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2 1101 2620 226 126 34 chr4 67699811 67700531 -87929589 + RMER6A LTR ERVK 1 752 -4 2 1101 38411 4 0 0 chr4 67700736 67705798 -87924322 - L1Md_A LINE L1 0 6582 1521 2 1101 775 261 48 57 chr4 67706407 67706760 -87923360 + RLTR15 LTR ERVK 1 350 -9 2 1101 662 218 13 47 chr4 67706831 67706980 -87923140 + B1_Mus2 SINE Alu 2 145 -2 2 1101 286 127 28 0 chr4 67706982 67707053 -87923067 + A-rich Low_complexity Low_complexity 4 76 0 2 1101 34 89 0 0 chr4 67707513 67707603 -87922517 + AT_rich Low_complexity Low_complexity 1 90 0 2 1101 726 345 26 63 chr4 67707627 67708131 -87921989 + RMER5 LTR ERV1 49 533 -1 2 1101 25 0 0 0 chr4 67708156 67708181 -87921939 + AT_rich Low_complexity Low_complexity 1 25 0 2 1101 419 243 66 20 chr4 67708772 67708923 -87921197 - L1M5 LINE L1 -1127 5019 4862 2 1101 201 282 92 23 chr4 67708965 67709052 -87921068 - L2a LINE L2 -19 3407 3315 2 1101 510 17 0 0 chr4 67709052 67709111 -87921009 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1101 3116 158 21 19 chr4 67710589 67711164 -87918956 - Lx2 LINE L1 0 6997 6422 2 1101 2043 189 31 7 chr4 67712242 67712700 -87917420 + L1_Mur2 LINE L1 4830 5298 -579 2 1101 7670 65 9 1 chr4 67712690 67713704 -87916416 + L1_Mus1 LINE L1 5515 6541 -26 3 1101 1729 113 31 17 chr4 67713704 67713991 -87916129 + L1Md_F2 LINE L1 6290 6580 -2 3 1101 7670 62 7 1 chr4 67713991 67714017 -87916103 + L1_Mus1 LINE L1 6542 6567 0 3 1101 6107 131 65 1 chr4 67714024 67715301 -87914819 + L1_Mus4 LINE L1 5288 6631 -5 3 1101 322 319 71 38 chr4 67715781 67716001 -87914119 - L2b LINE L2 -1 3374 3182 3 1101 205 189 0 0 chr4 67717729 67717766 -87912354 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 3 1101 255 225 181 56 chr4 67718995 67719006 -87911114 - CYRA11_Mm Unknown Y-chromosome -289 328 277 3 1101 583 145 151 16 chr4 67719006 67719132 -87910988 + URR1B DNA MER1_type 83 225 0 3 1101 255 225 181 56 chr4 67719132 67719155 -87910965 - CYRA11_Mm Unknown Y-chromosome -289 276 149 3 1101 306 350 20 10 chr4 67719176 67719274 -87910846 + RSINE1 SINE B4 9 107 -58 3 1101 484 195 8 138 chr4 67719289 67719449 -87910671 + Lx5 LINE L1 6914 7054 -4 3 1101 405 123 0 0 chr4 67719502 67719567 -87910553 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1101 279 323 22 108 chr4 67719633 67719772 -87910348 + RSINE1 SINE B4 39 165 0 3 1101 542 106 0 21 chr4 67719861 67719957 -87910163 - Lx LINE L1 -39 6615 6522 3 1101 221 444 53 0 chr4 67720740 67720947 -87909173 + L2 LINE L2 2836 3053 -366 3 1101 1010 141 0 11 chr4 67721583 67721763 -87908357 + CT-rich Low_complexity Low_complexity 3 180 0 3 1101 1335 88 10 20 chr4 67721763 67721776 -87908344 - B2_Mm2 SINE B2 0 195 183 3 1101 1099 102 0 0 chr4 67721776 67721923 -87908197 - B1_Mus1 SINE Alu 0 148 2 3 1101 1335 88 10 20 chr4 67721923 67722105 -87908015 - B2_Mm2 SINE B2 -13 182 3 3 1101 34 93 0 0 chr4 67722369 67722466 -87907654 + AT_rich Low_complexity Low_complexity 1 97 0 3 1101 25526 18 0 0 chr4 67724313 67728007 -87902113 - L1Md_T LINE L1 0 6582 2889 3 1101 869 96 0 0 chr4 67728007 67728132 -87901988 - B1_Mus1 SINE Alu -23 125 1 3 1101 21 36 0 0 chr4 67728216 67728244 -87901876 + AT_rich Low_complexity Low_complexity 1 28 0 3 1101 465 115 0 0 chr4 67728259 67728346 -87901774 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1101 351 0 0 0 chr4 67728346 67728385 -87901735 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1101 766 289 29 0 chr4 67728448 67728656 -87901464 + B3 SINE B2 1 214 -2 3 1101 969 138 7 0 chr4 67729771 67729916 -87900204 + B1_Mus1 SINE Alu 3 148 0 3 1101 899 65 8 0 chr4 67729986 67730109 -87900011 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 3 1101 7440 60 5 4 chr4 67730148 67731098 -87899022 - L1_Mus1 LINE L1 0 6567 5617 3 1101 2649 113 0 3 chr4 67731095 67731484 -87898636 + L1_Mm LINE L1 4814 5201 -682 3 1101 472 360 57 31 chr4 67732335 67732527 -87897593 + B3A SINE B2 1 197 -1 3 1101 210 131 32 32 chr4 67732813 67732876 -87897244 + (CATA)n Simple_repeat Simple_repeat 1 63 0 3 1101 1563 167 50 7 chr4 67733296 67733573 -87896547 - ORR1A2 LTR MaLR 0 327 39 3 1101 393 326 21 48 chr4 67733971 67734149 -87895971 - MIRc SINE MIR -70 198 22 3 1101 465 213 93 22 chr4 67734214 67734353 -87895767 + MER117 DNA MER1_type 4 152 -45 3 1101 240 309 83 0 chr4 67735028 67735112 -87895008 + MIRb SINE MIR 162 252 -16 3 1101 24 0 0 0 chr4 67735113 67735137 -87894983 + AT_rich Low_complexity Low_complexity 1 24 0 3 1101 245 261 14 0 chr4 67735406 67735475 -87894645 - MIRb SINE MIR -134 134 65 3 1101 651 347 16 0 chr4 67736024 67736214 -87893906 + MTEa LTR MaLR 1 193 -186 3 1101 6639 144 50 14 chr4 67736456 67737628 -87892492 - Lx2 LINE L1 0 6997 5783 3 1101 293 290 78 39 chr4 67737800 67737929 -87892191 - RMER5 LTR ERV1 -399 135 2 3 1101 560 207 0 15 chr4 67737983 67738120 -87892000 + (CATA)n Simple_repeat Simple_repeat 2 136 0 3 1101 199 342 140 12 chr4 67739398 67739655 -87890465 - L2 LINE L2 -1089 2330 2041 3 1101 504 0 0 0 chr4 67739973 67740029 -87890091 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1101 26 0 0 0 chr4 67740752 67740778 -87889342 + AT_rich Low_complexity Low_complexity 1 26 0 3 1101 243 362 78 21 chr4 67741672 67741864 -87888256 + Arthur1 DNA Tip100 76 278 -3669 3 1101 281 361 17 92 chr4 67742380 67742499 -87887621 - B4A SINE B4 -144 148 39 3 1101 398 19 0 0 chr4 67742668 67742721 -87887399 - L1_Mus1 LINE L1 0 6567 6515 3 1101 4817 58 10 6 chr4 67744805 67745433 -87884687 + L1Md_F3 LINE L1 5954 6583 -1 3 1101 189 0 0 0 chr4 67747642 67747663 -87882457 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1101 396 162 0 51 chr4 67748079 67748142 -87881978 + polypyrimidine Low_complexity Low_complexity 53 111 0 3 1101 1145 83 0 6 chr4 67748142 67748323 -87881797 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1101 396 162 0 51 chr4 67748323 67748376 -87881744 + polypyrimidine Low_complexity Low_complexity 1 52 0 3 1101 388 123 27 0 chr4 67748365 67748438 -87881682 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 3 1101 277 270 30 0 chr4 67749149 67749249 -87880871 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 3 1101 506 294 54 159 chr4 67749504 67749743 -87880377 - B4A SINE B4 -64 228 15 3 1101 430 273 0 22 chr4 67750393 67750528 -87879592 + Lx4B LINE L1 6924 7055 -3 3 1101 320 227 108 8 chr4 67750535 67750655 -87879465 - Lx9 LINE L1 -8 7636 7505 3 1101 692 302 0 6 chr4 67750738 67750898 -87879222 + B3A SINE B2 1 159 -39 3 1101 351 360 101 16 chr4 67754121 67754310 -87875810 + B3 SINE B2 3 207 -9 3 1101 826 305 65 42 chr4 67754802 67755158 -87874962 - Lx6 LINE L1 -26 7434 7071 3 1101 8449 147 17 15 chr4 67755258 67757260 -87872860 - Lx3C LINE L1 -3 6973 4997 3 1101 1200 99 12 0 chr4 67757260 67757431 -87872689 - L1_Mus1 LINE L1 -1 6566 6394 3 1101 7122 164 11 34 chr4 67757431 67757912 -87872208 - Lx3C LINE L1 -890 4996 4517 3 1101 2009 170 34 0 chr4 67757962 67758159 -87871961 - Lx3C LINE L1 -4256 1630 1434 3 1101 200 34 0 33 chr4 67758159 67758189 -87871931 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1101 3309 196 32 50 chr4 67758189 67759148 -87870972 - Lx3C LINE L1 -4453 1433 518 3 1101 551 311 35 10 chr4 67759307 67759565 -87870555 - Lx6 LINE L1 -566 6894 6454 3 1101 183 100 0 0 chr4 67759571 67759601 -87870519 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1101 1628 209 17 33 chr4 67759667 67760029 -87870091 - ORR1B1 LTR MaLR 0 394 39 3 1101 4361 182 35 96 chr4 67760033 67761029 -87869091 - ORR1B1-int LTR MaLR 0 1963 1029 3 1101 8255 44 2 0 chr4 67761029 67762168 -87867952 - L1Md_F2 LINE L1 -3 6579 5439 3 1101 952 225 0 0 chr4 67762177 67762346 -87867774 - ORR1B1-int LTR MaLR -918 1045 877 3 1101 273 190 86 0 chr4 67762352 67762410 -87867710 - B1_Mus2 SINE Alu -26 121 59 3 1101 2202 197 34 36 chr4 67762410 67762857 -87867263 + RLTR41 LTR ERV1 1 446 0 3 1101 347 202 0 87 chr4 67762863 67762955 -87867165 + ORR1A4 LTR MaLR 95 178 -151 3 1101 23 0 0 0 chr4 67763076 67763099 -87867021 + AT_rich Low_complexity Low_complexity 1 23 0 3 1101 766 147 14 0 chr4 67763114 67763257 -87866863 + CT-rich Low_complexity Low_complexity 2 146 0 3 1101 1539 196 58 45 chr4 67763727 67764106 -87866014 + ORR1C2 LTR MaLR 1 384 0 3 1102 21 0 0 0 chr4 67764508 67764529 -87865591 + AT_rich Low_complexity Low_complexity 1 21 0 3 1102 250 264 18 9 chr4 67764643 67764754 -87865366 + (TAAA)n Simple_repeat Simple_repeat 3 114 0 3 1102 810 114 297 0 chr4 67765039 67765213 -87864907 - L1_Mus1 LINE L1 0 6582 6355 3 1102 203 79 0 26 chr4 67765335 67765374 -87864746 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1102 3924 86 2 25 chr4 67765397 67765945 -87864175 - L1_Mus2 LINE L1 0 6566 6032 3 1102 390 21 0 0 chr4 67766093 67766140 -87863980 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 1102 1132 61 0 7 chr4 67767746 67767894 -87862226 + B1_Mm SINE Alu 1 147 0 3 1102 240 86 0 0 chr4 67768510 67768545 -87861575 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1102 387 0 0 0 chr4 67768926 67768969 -87861151 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1102 240 200 0 0 chr4 67769214 67769274 -87860846 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1102 205 258 20 10 chr4 67769252 67769350 -87860770 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 3 1102 237 371 35 84 chr4 67769467 67769670 -87860450 - B4A SINE B4 -98 194 2 3 1102 296 323 15 30 chr4 67770146 67770277 -87859843 + MIR SINE MIR 134 262 0 3 1102 300 53 0 0 chr4 67770580 67770618 -87859502 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1102 306 337 38 54 chr4 67770690 67770875 -87859245 - B3A SINE B2 -16 182 1 3 1102 4369 20 0 0 chr4 67772129 67772622 -87857498 - MT2_Mm LTR ERVL 0 493 1 3 1102 261 0 0 0 chr4 67772947 67772976 -87857144 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1102 791 0 21 0 chr4 67773143 67773237 -87856883 + (ATGTG)n Simple_repeat Simple_repeat 1 96 0 3 1102 2300 69 119 11 chr4 67773294 67773646 -87856474 + RLTR10 LTR ERVK 1 390 0 3 1102 341 255 4 4 chr4 67773655 67773754 -87856366 - L1_Mur2 LINE L1 -5981 1001 903 3 1102 751 169 42 7 chr4 67774178 67774321 -87855799 - MERVK26-int LTR ERVK -6446 473 326 3 1102 216 0 0 0 chr4 67774334 67774358 -87855762 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 3 1102 834 238 13 70 chr4 67774358 67774588 -87855532 - MERVK26-int LTR ERVK -6647 272 56 3 1102 436 343 107 29 chr4 67774742 67774907 -87855213 - RLTR26 LTR ERVK -22 605 429 3 1102 2757 112 34 102 chr4 67774907 67775464 -87854656 + MURVY-LTR LTR ERV1 1 519 0 3 1102 436 332 55 77 chr4 67775464 67775686 -87854434 - RLTR26 LTR ERVK -199 428 169 3 1102 1804 221 191 51 chr4 67775753 67776325 -87853795 - RMER13B LTR ERVK 0 908 257 3 1102 352 169 128 53 chr4 67776326 67776420 -87853700 - Lx2 LINE L1 -74 6923 6823 3 1102 2816 22 5 59 chr4 67776434 67776822 -87853298 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1102 1017 119 74 0 chr4 67776822 67776998 -87853122 + IAPEz-int LTR ERVK 8 196 -6285 3 1102 6389 80 156 38 chr4 67776969 67778134 -87851986 + IAPEz-int LTR ERVK 67 1313 -5168 3 1102 28676 22 1 1 chr4 67778133 67781390 -87848730 + IAPEz-int LTR ERVK 3210 6468 -13 3 1102 265 136 0 33 chr4 67781390 67781404 -87848716 + Lx2 LINE L1 6939 6951 -46 3 1102 2816 22 5 59 chr4 67781404 67781792 -87848328 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1102 265 136 0 33 chr4 67781792 67781838 -87848282 + Lx2 LINE L1 6952 6997 0 3 1102 433 222 20 29 chr4 67781891 67781993 -87848127 - RMER13B LTR ERVK -627 281 181 3 1102 484 261 56 14 chr4 67781985 67782129 -87847991 - RLTR26 LTR ERVK -371 271 122 3 1102 270 106 0 0 chr4 67782340 67782387 -87847733 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 4 1102 570 29 0 0 chr4 67784688 67784756 -87845364 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1102 716 174 199 5 chr4 67784964 67785155 -87844965 - Lx7 LINE L1 -23 7673 7446 4 1102 994 103 14 0 chr4 67785190 67785335 -87844785 + B1_Mus1 SINE Alu 1 147 -1 4 1102 885 138 0 0 chr4 67785338 67785483 -87844637 + (GGA)n Simple_repeat Simple_repeat 2 146 0 4 1102 461 47 0 15 chr4 67785483 67785548 -87844572 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 4 1102 294 50 0 0 chr4 67785616 67785656 -87844464 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1102 245 91 0 43 chr4 67785656 67785702 -87844418 + (GGGAGA)n Simple_repeat Simple_repeat 4 47 0 4 1102 189 0 0 0 chr4 67786068 67786089 -87844031 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1102 331 352 64 14 chr4 67786089 67786230 -87843890 - B3 SINE B2 -63 153 6 4 1102 26 0 0 0 chr4 67786331 67786357 -87843763 + AT_rich Low_complexity Low_complexity 1 26 0 4 1102 2136 266 88 17 chr4 67786366 67787100 -87843020 + Lx5 LINE L1 5736 6748 -712 4 1102 1284 89 0 0 chr4 67787100 67787280 -87842840 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1102 1217 289 61 35 chr4 67787280 67787722 -87842398 + Lx5 LINE L1 6457 7279 -181 4 1102 25 51 0 0 chr4 67787802 67787841 -87842279 + AT_rich Low_complexity Low_complexity 1 39 0 4 1102 453 258 116 6 chr4 67788066 67788230 -87841890 + RMER5 LTR ERV1 353 534 0 4 1102 504 0 0 0 chr4 67789755 67789811 -87840309 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1102 581 304 98 47 chr4 67790288 67790781 -87839339 - L1MA5A LINE L1 -367 5930 5349 4 1102 588 349 52 29 chr4 67790895 67791205 -87838915 - MLT1A0 LTR MaLR 0 365 49 4 1102 2121 202 38 23 chr4 67791511 67792032 -87838088 - Lx9 LINE L1 -7 7637 7109 4 1102 982 65 14 0 chr4 67792245 67792383 -87837737 - L1_Mus1 LINE L1 0 6567 6428 4 1102 288 235 37 161 chr4 67792385 67792547 -87837573 + Lx7 LINE L1 7219 7360 -336 4 1102 467 161 11 0 chr4 67792591 67792678 -87837442 + Lx9 LINE L1 6980 7067 -577 4 1102 574 333 14 29 chr4 67793446 67793478 -87836642 + B3 SINE B2 7 37 -179 4 1102 183 42 0 0 chr4 67793478 67793502 -87836618 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1102 574 333 14 29 chr4 67793502 67793676 -87836444 + B3 SINE B2 38 210 -6 4 1102 21 36 0 0 chr4 67794450 67794478 -87835642 + AT_rich Low_complexity Low_complexity 1 28 0 4 1102 404 318 29 81 chr4 67794804 67795013 -87835107 + B3A SINE B2 1 198 0 4 1102 2663 25 6 0 chr4 67795508 67795822 -87834298 - L1Md_F2 LINE L1 -653 5929 5614 4 1102 5183 62 9 0 chr4 67795822 67796485 -87833635 + L1Md_F2 LINE L1 5914 6582 0 4 1102 301 27 0 0 chr4 67796567 67796604 -87833516 - L1Md_A LINE L1 -444 6138 6102 4 1102 3642 35 5 0 chr4 67796604 67797039 -87833081 + L1Md_T LINE L1 6145 6581 -1 4 1102 234 302 57 0 chr4 67797044 67797150 -87832970 + Zaphod DNA Tip100 1229 1340 -2691 4 1102 225 24 71 0 chr4 67798155 67798197 -87831923 + (CAA)n Simple_repeat Simple_repeat 2 46 0 4 1102 412 216 80 0 chr4 67798221 67798259 -87831861 - MTC LTR MaLR -107 314 270 4 1102 1468 150 55 18 chr4 67798259 67798606 -87831514 + IAPLTR4 LTR ERVK 1 372 -13 4 1102 360 177 189 94 chr4 67798609 67798631 -87831489 - MTC LTR MaLR -198 223 210 4 1102 778 28 19 0 chr4 67798631 67798739 -87831381 - L1Md_A LINE L1 0 6582 6473 4 1102 360 177 189 94 chr4 67798739 67798822 -87831298 - MTC LTR MaLR -212 209 108 4 1102 1139 75 0 0 chr4 67798822 67798969 -87831151 + B1_Mm SINE Alu 1 147 0 4 1102 306 73 0 0 chr4 67798969 67799010 -87831110 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1102 655 192 0 70 chr4 67799013 67799142 -87830978 - MTC LTR MaLR -301 120 1 4 1102 270 164 0 0 chr4 67799349 67799404 -87830716 + T-rich Low_complexity Low_complexity 1 55 0 4 1102 422 216 45 0 chr4 67799410 67799498 -87830622 - PB1D9 SINE Alu -2 118 27 4 1102 646 324 35 22 chr4 67800119 67800346 -87829774 + B4A SINE B4 26 255 -37 4 1102 294 361 42 92 chr4 67802233 67802495 -87827625 + MTEb LTR MaLR 3 251 -128 4 1102 807 330 69 82 chr4 67802482 67802859 -87827261 + ORR1D2 LTR MaLR 23 394 0 4 1102 430 305 96 39 chr4 67803353 67803695 -87826425 + MLT1C LTR MaLR 34 387 -3 4 1102 406 377 75 0 chr4 67803844 67803990 -87826130 - RSINE1 SINE B4 -4 161 5 4 1102 235 210 16 16 chr4 67804093 67804156 -87825964 + (TAA)n Simple_repeat Simple_repeat 1 63 0 4 1102 30 69 0 0 chr4 67804235 67804293 -87825827 + AT_rich Low_complexity Low_complexity 1 58 0 4 1102 320 244 12 0 chr4 67804980 67805066 -87825054 + CT-rich Low_complexity Low_complexity 1 87 0 4 1102 218 200 0 0 chr4 67805454 67805499 -87824621 + T-rich Low_complexity Low_complexity 4 48 0 4 1102 25 0 0 0 chr4 67806893 67806918 -87823202 + AT_rich Low_complexity Low_complexity 1 25 0 4 1102 420 233 207 0 chr4 67807309 67807425 -87822695 + B1F1 SINE Alu 3 142 -7 4 1102 240 35 0 0 chr4 67807624 67807653 -87822467 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1102 426 278 136 6 chr4 67811265 67811442 -87818678 + B3 SINE B2 4 203 -13 4 1102 259 328 36 44 chr4 67811459 67811596 -87818524 + B3A SINE B2 3 138 -60 4 1102 411 56 0 0 chr4 67811602 67811656 -87818464 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1102 23 0 0 0 chr4 67811929 67811952 -87818168 + AT_rich Low_complexity Low_complexity 1 23 0 4 1102 386 384 40 6 chr4 67811954 67812127 -87817993 - ID_B1 SINE B4 -5 219 41 4 1102 918 332 20 37 chr4 67812421 67812774 -87817346 - MLT1A0 LTR MaLR -12 353 7 4 1102 3969 286 60 39 chr4 67812880 67813571 -87816549 - Lx6 LINE L1 -11 7449 6750 4 1102 298 0 48 0 chr4 67813571 67813613 -87816507 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4 1102 3969 286 60 39 chr4 67813613 67814429 -87815691 - Lx6 LINE L1 -711 6749 5911 4 1102 1622 251 47 37 chr4 67814397 67815146 -87814974 - Lx5 LINE L1 -396 6654 5827 4 1102 5366 91 0 0 chr4 67815166 67815884 -87814236 - L1_Mus1 LINE L1 0 6567 5850 4 1102 4190 68 2 2 chr4 67815884 67816427 -87813693 + L1_Mus1 LINE L1 5310 5852 -31 4 1102 516 242 8 0 chr4 67816446 67816570 -87813550 - Lx5 LINE L1 -1209 5841 5717 4 1102 793 22 0 0 chr4 67816568 67816659 -87813461 - L1_Mm LINE L1 -891 4992 4902 4 1102 1820 56 0 0 chr4 67816661 67816892 -87813228 + L1Md_T LINE L1 6352 6582 0 4 1102 1107 133 0 0 chr4 67816894 67817067 -87813053 - Lx5 LINE L1 -159 5718 5546 4 1102 351 190 25 12 chr4 67817081 67817161 -87812959 - L1_Mur3 LINE L1 -1601 4279 4199 4 1102 342 279 77 21 chr4 67817525 67817719 -87812401 + L1MC LINE L1 4402 4606 -1540 4 1102 362 296 28 7 chr4 67817784 67817927 -87812193 - Lx8 LINE L1 -904 6569 6424 4 1102 206 88 33 66 chr4 67818075 67818136 -87811984 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1102 818 158 0 35 chr4 67818149 67818293 -87811827 - B1_Mur4 SINE Alu 0 150 12 4 1102 223 267 184 7 chr4 67818531 67818667 -87811453 - MIR SINE MIR -29 233 74 4 1102 33 0 0 0 chr4 67818865 67818898 -87811222 + AT_rich Low_complexity Low_complexity 1 33 0 4 1102 259 378 77 18 chr4 67820358 67820630 -87809490 + L2 LINE L2 2537 2824 -595 4 1102 995 256 26 79 chr4 67822297 67822319 -87807801 - MT2B LTR ERVL -2 599 579 4 1102 796 185 196 0 chr4 67822319 67822508 -87807612 - URR1A DNA MER1_type 0 226 1 4 1102 995 275 43 72 chr4 67822508 67823011 -87807109 - MT2B LTR ERVL -23 578 1 4 1102 1191 194 9 0 chr4 67825215 67825437 -87804683 + URR1B DNA MER1_type 2 225 0 4 1102 708 271 41 37 chr4 67826115 67826333 -87803787 - ID_B1 SINE B4 -5 219 1 4 1102 282 363 112 12 chr4 67827596 67827847 -87802273 - MLT1A LTR MaLR -93 281 6 4 1102 362 333 60 8 chr4 67828180 67828313 -87801807 + MTD LTR MaLR 43 182 -237 4 1102 671 324 64 3 chr4 67828334 67828765 -87801355 - RMER1B Other Other -730 336 55 4 1102 588 332 23 103 chr4 67829836 67830098 -87800022 + B4 SINE B4 51 291 -1 4 1102 203 133 44 0 chr4 67830286 67830331 -87799789 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1102 369 295 96 66 chr4 67830896 67831063 -87799057 - RMER15 LTR ERVL -154 421 250 4 1102 244 70 0 44 chr4 67831782 67831827 -87798293 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 1102 347 306 87 23 chr4 67831895 67832159 -87797961 - L1MC4 LINE L1 -971 7071 6791 4 1102 541 61 24 0 chr4 67832169 67832251 -87797869 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1102 384 22 0 0 chr4 67832322 67832367 -87797753 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1102 342 169 0 0 chr4 67832601 67832666 -87797454 + GA-rich Low_complexity Low_complexity 3 67 0 4 1102 284 340 70 33 chr4 67833128 67833275 -87796845 + B3A SINE B2 73 216 0 4 1102 405 58 0 0 chr4 67833332 67833384 -87796736 + (T)n Simple_repeat Simple_repeat 1 52 0 4 1102 1778 5 0 0 chr4 67833395 67833601 -87796519 - L1Md_T LINE L1 0 6582 6377 4 1102 228 403 7 54 chr4 67833855 67834002 -87796118 + B3A SINE B2 9 148 -50 4 1102 22 56 0 0 chr4 67834271 67834307 -87795813 + AT_rich Low_complexity Low_complexity 1 36 0 4 1102 528 285 181 43 chr4 67834743 67835025 -87795095 - L3b LINE CR1 -133 349 29 4 1102 1803 218 121 72 chr4 67835919 67836161 -87793959 + RLTR11A LTR ERVK 1 240 -288 4 1102 3731 94 17 17 chr4 67836161 67836693 -87793427 + L1_Mus4 LINE L1 6103 6634 -2 4 1102 1803 218 121 72 chr4 67836693 67836953 -87793167 + RLTR11A LTR ERVK 241 528 0 4 1102 1163 209 14 0 chr4 67837860 67838080 -87792040 + URR1A DNA MER1_type 2 224 -2 4 1102 22 0 0 0 chr4 67838319 67838341 -87791779 + AT_rich Low_complexity Low_complexity 1 22 0 4 1102 189 107 0 0 chr4 67838437 67838465 -87791655 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 4 1102 423 233 0 0 chr4 67838465 67838568 -87791552 + GA-rich Low_complexity Low_complexity 2 104 0 4 1102 801 305 139 14 chr4 67838683 67839128 -87790992 - Lx7 LINE L1 -526 7170 6670 4 1102 26 0 0 0 chr4 67839772 67839798 -87790322 + AT_rich Low_complexity Low_complexity 1 26 0 4 1102 205 152 0 0 chr4 67839965 67839998 -87790122 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1102 3658 235 37 61 chr4 67840384 67841308 -87788812 - RMER13B LTR ERVK 0 908 7 5 1102 1486 168 21 81 chr4 67841314 67841548 -87788572 - RMER17C LTR ERVK 0 410 181 5 1102 663 13 0 0 chr4 67841548 67841624 -87788496 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1102 1486 166 36 67 chr4 67841624 67841856 -87788264 - RMER17C LTR ERVK -559 399 1 5 1102 754 221 6 20 chr4 67842395 67842606 -87787514 - Lx7 LINE L1 -893 6104 5902 4 1102 5502 152 12 1 chr4 67842580 67843537 -87786583 - L1_Mur2 LINE L1 -1028 4849 3882 5 1102 916 163 7 7 chr4 67843565 67843719 -87786401 + U1 snRNA snRNA 1 154 -11 5 1102 237 43 64 0 chr4 67844713 67844760 -87785360 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1102 1014 109 0 0 chr4 67844760 67844907 -87785213 - B1_Mus2 SINE Alu 0 147 1 5 1102 708 280 50 58 chr4 67845253 67845674 -87784446 + Lx9 LINE L1 5628 6045 -1599 5 1102 290 221 23 8 chr4 67846183 67846315 -87783805 + (TA)n Simple_repeat Simple_repeat 2 135 0 5 1102 290 322 36 62 chr4 67847658 67847850 -87782270 + MIR3 SINE MIR 11 197 -11 5 1102 260 356 52 0 chr4 67848230 67848345 -87781775 - MLT1L LTR MaLR -28 582 462 5 1102 508 326 5 30 chr4 67848997 67849199 -87780921 + B3A SINE B2 2 198 0 5 1102 495 0 0 0 chr4 67849990 67850045 -87780075 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1102 498 86 0 0 chr4 67850046 67850127 -87779993 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1102 802 320 48 27 chr4 67850256 67850593 -87779527 + Lx9 LINE L1 6369 6712 -932 5 1102 2643 70 3 0 chr4 67850593 67850991 -87779129 - L1_Mus1 LINE L1 -641 5926 5528 5 1102 4862 72 27 0 chr4 67850991 67851631 -87778489 + L1_Mus1 LINE L1 5911 6567 0 5 1102 208 70 47 0 chr4 67851642 67851685 -87778435 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 5 1102 424 355 41 74 chr4 67851691 67852303 -87777817 + Lx9 LINE L1 6577 7311 -333 5 1102 531 118 0 0 chr4 67852406 67852491 -87777629 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1102 361 278 62 0 chr4 67852651 67852748 -87777372 - PB1D9 SINE Alu -17 103 1 5 1102 527 303 31 37 chr4 67852848 67853009 -87777111 - RSINE1 SINE B4 0 165 6 5 1102 24 0 0 0 chr4 67853395 67853419 -87776701 + AT_rich Low_complexity Low_complexity 1 24 0 5 1102 203 306 101 10 chr4 67853874 67853973 -87776147 - MIRc SINE MIR -1 267 160 5 1102 723 24 0 0 chr4 67854449 67854534 -87775586 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1102 5953 130 12 0 chr4 67854534 67855442 -87774678 - Lx LINE L1 -7 6647 5729 5 1102 232 229 0 0 chr4 67855611 67855659 -87774461 - Lx8 LINE L1 -547 6926 6879 5 1102 1612 214 17 42 chr4 67855802 67856158 -87773962 + ORR1B2 LTR MaLR 19 365 -2 5 1102 189 0 0 0 chr4 67856215 67856236 -87773884 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1102 426 108 0 0 chr4 67856236 67856301 -87773819 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1102 790 257 85 80 chr4 67856301 67856763 -87773357 - MT2B2 LTR ERVL -60 524 1 5 1102 207 0 0 0 chr4 67856776 67856799 -87773321 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1102 1488 227 21 59 chr4 67857232 67857621 -87772499 - ORR1D1 LTR MaLR 0 374 1 5 1102 1129 75 0 0 chr4 67858270 67858417 -87771703 - B1_Mm SINE Alu 0 147 1 5 1102 295 205 12 25 chr4 67859470 67859550 -87770570 + GA-rich Low_complexity Low_complexity 2 80 0 5 1102 2937 198 37 24 chr4 67860281 67861253 -87768867 + L1VL4 LINE L1 147 1139 -2420 5 1102 1096 289 59 26 chr4 67861401 67862098 -87768022 - L1M3 LINE L1 -2571 3569 2850 5 1102 209 108 27 0 chr4 67863737 67863774 -87766346 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1102 397 311 208 16 chr4 67864612 67864857 -87765263 + B4A SINE B4 1 292 0 5 1102 438 124 0 0 chr4 67864858 67864947 -87765173 + (TC)n Simple_repeat Simple_repeat 1 89 0 5 1102 366 147 0 0 chr4 67864946 67865014 -87765106 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1102 6930 143 26 1 chr4 67865133 67867025 -87763095 + L1_Mus4 LINE L1 4681 6628 -8 5 1102 380 268 360 0 chr4 67869022 67869186 -87760934 + URR1A DNA MER1_type 4 226 0 5 1102 518 295 55 71 chr4 67869492 67869857 -87760263 - RMER15 LTR ERVL -99 476 1 5 1102 427 254 67 37 chr4 67870437 67870572 -87759548 - Lx8 LINE L1 -251 7222 7084 5 1102 409 332 92 18 chr4 67871150 67871432 -87758688 + RMER5 LTR ERV1 202 504 -30 5 1102 196 149 43 0 chr4 67871469 67871516 -87758604 + CT-rich Low_complexity Low_complexity 2 50 0 5 1102 7068 120 16 3 chr4 67871567 67872999 -87757121 - L1_Mus3 LINE L1 -6 6632 5182 5 1102 13863 131 26 30 chr4 67872996 67876072 -87754048 - L1Md_F LINE L1 -2607 3276 210 5 1102 2092 261 53 34 chr4 67876088 67877164 -87752956 - Lx7 LINE L1 -1345 6351 5244 5 1102 582 15 0 0 chr4 67877164 67877231 -87752889 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 5 1102 2092 236 70 44 chr4 67877231 67877248 -87752872 - Lx7 LINE L1 -637 5243 5230 5 1102 8004 53 3 0 chr4 67877257 67878313 -87751807 - L1Md_F2 LINE L1 0 6582 5524 5 1102 7478 74 9 2 chr4 67878312 67879315 -87750805 - L1Md_F2 LINE L1 -498 5385 4376 5 1102 5436 208 59 52 chr4 67879315 67880903 -87749217 - Lx7 LINE L1 -637 5249 3652 5 1102 212 59 0 29 chr4 67880903 67880938 -87749182 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1102 5714 228 95 50 chr4 67880938 67883125 -87746995 - Lx7 LINE L1 -2223 3663 1581 5 1102 325 247 43 11 chr4 67883133 67883227 -87746893 + RLTR24 LTR ERV1 1 97 -432 5 1102 3818 239 110 30 chr4 67883229 67884017 -87746103 - Lx7 LINE L1 -6442 1286 430 5 1102 468 0 0 0 chr4 67884017 67884069 -87746051 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1102 3818 250 88 27 chr4 67884069 67884621 -87745499 - Lx7 LINE L1 -7108 620 18 5 1102 462 306 78 25 chr4 67884636 67885032 -87745088 - L1M3 LINE L1 -1094 5046 4630 5 1102 1598 231 44 56 chr4 67885059 67885468 -87744652 - Lx5 LINE L1 0 7050 6647 5 1102 2687 225 78 8 chr4 67885457 67886072 -87744048 + Lx5 LINE L1 5989 6646 -404 5 1102 1635 35 0 0 chr4 67886106 67886306 -87743814 - L1Md_A LINE L1 -2 6580 6381 5 1102 8916 5 1 0 chr4 67886319 67887488 -87742632 - L1Md_A LINE L1 0 6582 5413 5 1102 1953 9 0 0 chr4 67887486 67887711 -87742409 + L1Md_A LINE L1 5184 5408 -475 5 1102 813 121 0 14 chr4 67887712 67887855 -87742265 + L1Md_F2 LINE L1 6430 6570 -12 5 1102 2291 268 60 16 chr4 67887856 67888494 -87741626 + Lx6 LINE L1 6374 7039 -421 5 1102 1310 288 11 27 chr4 67888538 67888913 -87741207 - Lx5 LINE L1 -346 6704 6336 5 1102 1580 200 21 9 chr4 67888901 67889141 -87740979 + L1_Mur2 LINE L1 4038 4284 -1593 5 1102 222 37 0 0 chr4 67889141 67889168 -87740952 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1102 1580 200 21 9 chr4 67889168 67889260 -87740860 + L1_Mur2 LINE L1 4285 4373 -1504 5 1102 225 274 24 0 chr4 67889276 67889360 -87740760 + Lx7 LINE L1 7278 7363 -333 5 1102 214 146 20 20 chr4 67889372 67889421 -87740699 + T-rich Low_complexity Low_complexity 3 51 0 5 1102 714 256 16 31 chr4 67889552 67889810 -87740310 + Lx7 LINE L1 7443 7696 0 5 1102 3171 48 2 8 chr4 67890041 67890439 -87739681 - MTA_Mm LTR MaLR 0 396 1 5 1102 5479 88 11 46 chr4 67890439 67891261 -87738859 - MTA_Mm-int LTR MaLR 0 1098 300 5 1102 558 93 19 0 chr4 67891261 67891368 -87738752 - L1Md_F2 LINE L1 0 6582 6474 5 1102 5479 123 132 108 chr4 67891368 67891761 -87738359 - MTA_Mm-int LTR MaLR -867 391 3 5 1102 3083 61 2 10 chr4 67891761 67892160 -87737960 - MTA_Mm LTR MaLR 0 396 1 5 1102 21 0 0 0 chr4 67892705 67892726 -87737394 + AT_rich Low_complexity Low_complexity 1 21 0 5 1102 198 0 0 0 chr4 67892841 67892863 -87737257 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1102 382 316 38 50 chr4 67892866 67893026 -87737094 - MLT1A1 LTR MaLR -59 349 192 5 1102 600 283 121 12 chr4 67893176 67893600 -87736520 - L1MCb LINE L1 -4909 1514 1043 5 1102 476 133 0 6 chr4 67893777 67893867 -87736253 - L1_Mus2 LINE L1 -540 6114 6027 5 1102 1762 95 4 26 chr4 67893867 67894138 -87735982 + L1_Mus2 LINE L1 6300 6564 -2 5 1102 281 395 92 35 chr4 67894533 67894761 -87735359 + B4A SINE B4 3 243 -49 5 1102 231 36 0 0 chr4 67894789 67894817 -87735303 + (TTTTTA)n Simple_repeat Simple_repeat 5 32 0 5 1102 1051 95 0 0 chr4 67894817 67894964 -87735156 - B1_Mus2 SINE Alu 0 147 1 5 1103 402 361 47 35 chr4 67895994 67896166 -87733954 - Lx8 LINE L1 -239 7234 7061 5 1103 243 333 89 44 chr4 67896465 67896600 -87733520 + MIRb SINE MIR 3 143 -125 5 1103 617 353 68 22 chr4 67896927 67897205 -87732915 + Lx8 LINE L1 7039 7329 -144 5 1103 1517 304 88 38 chr4 67897246 67898164 -87731956 - Lx9 LINE L1 -469 7175 6069 5 1103 672 86 0 0 chr4 67899330 67899435 -87730685 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 1103 393 287 0 18 chr4 67899721 67899831 -87730289 + MTE2b LTR MaLR 1 108 -271 5 1103 4395 273 55 9 chr4 67899831 67901059 -87729061 - Lx6 LINE L1 -26 7434 6151 5 1103 494 350 106 28 chr4 67901581 67902007 -87728113 - MER82 DNA MER2_type -185 468 10 5 1103 857 317 94 20 chr4 67902163 67902504 -87727616 + MTE2b LTR MaLR 1 366 -13 5 1103 636 313 9 0 chr4 67903660 67903877 -87726243 - Lx9 LINE L1 -734 6910 6692 5 1103 235 336 54 50 chr4 67903890 67904150 -87725970 + Lx9 LINE L1 7339 7599 -45 5 1103 192 77 0 0 chr4 67904345 67904371 -87725749 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1103 295 352 21 7 chr4 67905534 67905677 -87724443 - MIR SINE MIR -5 257 113 5 1103 217 253 23 35 chr4 67905846 67905932 -87724188 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 5 1103 7567 45 0 1 chr4 67909102 67910018 -87720102 - L1Md_F2 LINE L1 -5 6577 5663 5 1103 4369 97 124 9 chr4 67910020 67910707 -87719413 - L1_Mus3 LINE L1 0 6638 5873 5 1103 22 0 0 0 chr4 67910880 67910902 -87719218 + AT_rich Low_complexity Low_complexity 1 22 0 5 1103 340 349 114 44 chr4 67911502 67911730 -87718390 + B4A SINE B4 4 247 -45 5 1103 405 0 0 0 chr4 67911948 67911993 -87718127 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1103 294 29 0 0 chr4 67912261 67912296 -87717824 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1103 21 71 0 0 chr4 67912378 67912420 -87717700 + AT_rich Low_complexity Low_complexity 1 42 0 5 1103 1135 112 21 11 chr4 67912841 67913030 -87717090 - L1Md_F2 LINE L1 -10 6572 6382 5 1103 6239 70 0 17 chr4 67913753 67914817 -87715303 - L1Md_F2 LINE L1 -185 6397 5350 5 1103 19811 80 162 0 chr4 67914810 67917843 -87712277 + L1Md_F2 LINE L1 1833 5357 -526 5 1103 377 318 75 30 chr4 67918018 67918151 -87711969 + MTE2a LTR MaLR 10 148 -271 5 1103 2309 67 3 10 chr4 67918152 67918455 -87711665 - L1_Mus2 LINE L1 -137 6429 6129 6 1103 538 79 0 43 chr4 67918455 67918594 -87711526 + L1_Mus2 LINE L1 6474 6566 0 6 1103 386 353 26 0 chr4 67918694 67918810 -87711310 + MTE2a LTR MaLR 195 313 -66 5 1103 268 167 86 57 chr4 67918849 67918919 -87711201 + MTE2a LTR MaLR 286 357 -2 5 1103 3416 110 2 2 chr4 67919484 67919968 -87710152 - L1_Mus2 LINE L1 -1 6565 6082 6 1103 918 96 0 0 chr4 67920071 67920206 -87709914 + (CTA)n Simple_repeat Simple_repeat 2 136 0 6 1103 281 174 14 0 chr4 67920214 67920283 -87709837 + CT-rich Low_complexity Low_complexity 1 70 0 6 1103 279 0 0 0 chr4 67920553 67920584 -87709536 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1103 25 0 0 0 chr4 67920972 67920997 -87709123 + AT_rich Low_complexity Low_complexity 1 25 0 6 1103 262 297 192 11 chr4 67921120 67921307 -87708813 - MLT1E3 LTR MaLR 0 624 404 6 1103 1584 88 17 4 chr4 67921563 67921803 -87708317 - L1_Mus3 LINE L1 -1 6637 6395 6 1103 213 226 0 0 chr4 67922383 67922436 -87707684 + T-rich Low_complexity Low_complexity 1 53 0 6 1103 244 434 24 30 chr4 67922486 67922650 -87707470 + RSINE1 SINE B4 1 163 -2 6 1103 213 235 0 14 chr4 67922660 67922729 -87707391 + A-rich Low_complexity Low_complexity 5 72 0 6 1103 309 317 28 96 chr4 67922913 67923091 -87707029 + B2_Mm2 SINE B2 3 168 -27 6 1103 191 61 30 0 chr4 67923539 67923572 -87706548 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1103 232 286 0 0 chr4 67923597 67923667 -87706453 + (TCTCTG)n Simple_repeat Simple_repeat 3 72 0 6 1103 429 76 0 0 chr4 67923667 67923733 -87706387 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1103 260 335 42 11 chr4 67925041 67925231 -87704889 - L1M1 LINE L1 -411 5889 5694 6 1103 1710 224 24 26 chr4 67925232 67925654 -87704466 - MTC LTR MaLR 0 421 1 6 1103 240 35 0 0 chr4 67925832 67925861 -87704259 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 6 1103 36 23 0 0 chr4 67926073 67926116 -87704004 + AT_rich Low_complexity Low_complexity 1 43 0 6 1103 23 0 0 0 chr4 67926747 67926770 -87703350 + AT_rich Low_complexity Low_complexity 1 23 0 6 1103 241 304 18 0 chr4 67928659 67928715 -87701405 + 7SK RNA RNA 9 65 -266 6 1103 195 167 0 0 chr4 67929947 67929989 -87700131 + (ATG)n Simple_repeat Simple_repeat 1 42 0 6 1103 190 373 0 13 chr4 67930205 67930281 -87699839 + MIRb SINE MIR 188 262 -6 6 1103 530 326 50 15 chr4 67931193 67931392 -87698728 + RMER15 LTR ERVL 250 455 -120 6 1103 299 85 21 0 chr4 67931392 67931439 -87698681 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 6 1103 470 282 53 8 chr4 67931558 67931690 -87698430 - MER5A DNA MER1_type -40 149 12 6 1103 291 329 52 82 chr4 67932333 67932565 -87697555 + MLT1L LTR MaLR 380 604 -6 6 1103 300 283 159 9 chr4 67934123 67934230 -87695890 + MIR3 SINE MIR 60 182 -26 6 1103 296 342 136 43 chr4 67934403 67934705 -87695415 + L3 LINE CR1 3357 3686 -803 6 1103 495 60 0 0 chr4 67934810 67934877 -87695243 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 6 1103 290 277 9 47 chr4 67936393 67936499 -87693621 - MER121 Unknown Unknown -167 245 144 6 1103 197 333 25 0 chr4 67936813 67936894 -87693226 - MIR SINE MIR -45 217 135 6 1103 466 360 77 29 chr4 67937890 67938202 -87691918 + MTEa LTR MaLR 51 377 -2 6 1103 4261 108 28 11 chr4 67938439 67939084 -87691036 - L1_Mus3 LINE L1 -1 6637 5982 6 1103 4239 108 8 1 chr4 67939091 67939864 -87690256 + L1_Mus3 LINE L1 5190 5971 -667 6 1103 292 211 100 9 chr4 67942987 67943097 -87687023 + L1MEe LINE L1 600 719 -4135 6 1103 240 35 0 0 chr4 67943268 67943297 -87686823 + (TATG)n Simple_repeat Simple_repeat 4 32 0 6 1103 23 108 0 0 chr4 67943664 67943757 -87686363 + AT_rich Low_complexity Low_complexity 1 93 0 6 1103 180 125 0 0 chr4 67943776 67943808 -87686312 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1103 23 54 0 0 chr4 67944050 67944087 -87686033 + AT_rich Low_complexity Low_complexity 1 37 0 6 1103 410 305 163 48 chr4 67944137 67944512 -87685608 + MER57C2 LTR ERV1 6 423 -11 6 1103 344 403 14 7 chr4 67944633 67944778 -87685342 + ORR1E LTR MaLR 5 150 -209 6 1103 1849 73 0 0 chr4 67945097 67945411 -87684709 - L1_Mus1 LINE L1 0 6567 6312 6 1103 4344 66 46 0 chr4 67945434 67945998 -87684122 + L1_Mus1 LINE L1 5595 6184 -383 6 1103 237 316 70 20 chr4 67946067 67946167 -87683953 + ORR1E LTR MaLR 250 354 -25 6 1103 353 321 99 21 chr4 67946494 67946777 -87683343 + L1M5 LINE L1 5285 5589 -575 6 1103 34 24 0 0 chr4 67947017 67947058 -87683062 + AT_rich Low_complexity Low_complexity 1 41 0 6 1103 541 309 0 0 chr4 67947409 67947532 -87682588 + RSINE1 SINE B4 5 127 -38 6 1103 402 108 0 0 chr4 67947547 67947612 -87682508 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1103 180 0 0 0 chr4 67947701 67947721 -87682399 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1103 27 0 0 0 chr4 67948117 67948144 -87681976 + AT_rich Low_complexity Low_complexity 1 27 0 6 1103 3170 232 57 11 chr4 67948271 67949113 -87681007 + Lx9 LINE L1 6756 7636 -8 6 1103 398 316 0 0 chr4 67949219 67949346 -87680774 + Lx8 LINE L1 7127 7265 -208 6 1103 452 324 101 73 chr4 67949903 67949989 -87680131 + BLACKJACK DNA AcHobo 1122 1213 -1731 6 1103 189 0 0 0 chr4 67949989 67950010 -87680110 + (CAAAG)n Simple_repeat Simple_repeat 3 23 0 6 1103 452 324 101 73 chr4 67950010 67950349 -87679771 + BLACKJACK DNA AcHobo 1214 1559 -1385 6 1103 310 295 32 24 chr4 67950375 67950500 -87679620 + BLACKJACK DNA AcHobo 1717 1842 -1102 6 1103 243 188 21 0 chr4 67950832 67950880 -87679240 + ID SINE ID 25 73 -151 6 1103 38316 7 0 1 chr4 67951130 67957109 -87673011 + L1Md_A LINE L1 1 5563 -320 6 1103 362 288 77 84 chr4 67957109 67957132 -87672988 + BLACKJACK DNA AcHobo 2551 2573 -371 6 1103 8999 4 0 0 chr4 67957132 67958128 -87671992 + L1Md_A LINE L1 5587 6582 0 6 1103 362 288 77 84 chr4 67958128 67958415 -87671705 + BLACKJACK DNA AcHobo 2574 2859 -85 6 1103 1685 341 51 66 chr4 67958552 67959402 -87670718 - MTE-int LTR MaLR -245 1335 522 6 1103 23 0 0 0 chr4 67959412 67959435 -87670685 + AT_rich Low_complexity Low_complexity 1 23 0 6 1103 8075 163 24 7 chr4 67959435 67961184 -87668936 - Lx2B LINE L1 -3 6997 5231 6 1103 4694 158 73 12 chr4 67961181 67961627 -87668493 + L1_Mur2 LINE L1 4164 4623 -1254 6 1103 306 0 0 0 chr4 67961627 67961661 -87668459 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1103 4694 158 73 12 chr4 67961661 67962158 -87667962 + L1_Mur2 LINE L1 4624 5165 -712 6 1103 3946 76 47 2 chr4 67962460 67963012 -87667108 - L1_Mus3 LINE L1 -10 6628 6052 6 1103 3489 82 135 0 chr4 67964508 67965018 -87665102 - L1_Mus2 LINE L1 -1 6565 5987 6 1103 898 188 7 0 chr4 67965018 67965167 -87664953 + L1_Mm LINE L1 5554 5703 -180 6 1103 649 324 42 8 chr4 67965173 67965413 -87664707 - MTE-int LTR MaLR -1109 471 224 6 1103 2056 222 32 88 chr4 67965419 67965987 -87664133 + Lx2B LINE L1 6312 6847 -153 6 1103 2164 211 61 4 chr4 67966089 67966545 -87663575 + Lx4A LINE L1 6567 7048 -10 6 1103 30326 95 44 11 chr4 67966610 67972762 -87657358 + L1Md_F2 LINE L1 208 6569 -13 6 1103 849 360 36 0 chr4 67973072 67973375 -87656745 - RMER1A Other Other -544 486 173 6 1103 1003 316 74 11 chr4 67973361 67973933 -87656187 - RMER1B Other Other -481 861 73 6 1103 519 112 0 0 chr4 67974905 67974985 -87655135 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1103 529 15 0 0 chr4 67975187 67975254 -87654866 - L1_Mus1 LINE L1 -589 5978 5912 6 1103 1466 71 0 5 chr4 67975254 67975453 -87654667 + L1_Mus1 LINE L1 6370 6567 0 6 1103 356 202 0 25 chr4 67975453 67975466 -87654654 - Lx LINE L1 -742 5912 5900 6 1103 1057 42 14 0 chr4 67975576 67975719 -87654401 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 1103 181 221 23 23 chr4 67975761 67975849 -87654271 + (CATA)n Simple_repeat Simple_repeat 1 88 0 6 1103 1493 112 0 0 chr4 67976218 67976432 -87653688 - L1_Mus2 LINE L1 0 6566 6353 6 1103 1523 73 22 4 chr4 67976435 67976659 -87653461 + L1_Mus2 LINE L1 5593 5847 -331 6 1103 22 35 0 0 chr4 67976979 67977008 -87653112 + AT_rich Low_complexity Low_complexity 1 29 0 6 1103 23 0 0 0 chr4 67979987 67980010 -87650110 + AT_rich Low_complexity Low_complexity 1 23 0 6 1103 1216 253 94 0 chr4 67982138 67982393 -87647727 + Lx9 LINE L1 7081 7350 -294 6 1103 540 0 0 0 chr4 67982393 67982453 -87647667 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1103 1216 253 94 0 chr4 67982453 67982580 -87647540 + Lx9 LINE L1 7351 7498 -146 6 1103 29656 104 20 4 chr4 67982751 67987049 -87643071 + L1_Mus2 LINE L1 237 4605 -1278 6 1103 5359 62 4 0 chr4 67987049 67987737 -87642383 + L1Md_F2 LINE L1 5890 6580 -2 6 1103 29656 100 12 11 chr4 67987737 67989690 -87640430 + L1_Mus2 LINE L1 4606 6565 -1 6 1103 32 26 0 0 chr4 67989756 67989795 -87640325 + AT_rich Low_complexity Low_complexity 1 39 0 6 1103 282 351 44 39 chr4 67990720 67990901 -87639219 - MER117 DNA MER1_type -3 194 13 6 1103 309 130 0 0 chr4 67991194 67991224 -87638896 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1103 387 0 0 0 chr4 67991224 67991267 -87638853 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1103 309 130 0 0 chr4 67991267 67991290 -87638830 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1103 435 406 74 74 chr4 67991641 67992019 -87638101 - LTR16A LTR ERVL -21 430 53 6 1103 636 212 49 49 chr4 67992131 67992275 -87637845 + B1_Mus2 SINE Alu 2 145 -2 6 1103 669 84 0 0 chr4 67992507 67992602 -87637518 + BC1_Mm scRNA scRNA 1 95 -57 6 1103 4977 52 36 8 chr4 67992603 67993245 -87636875 + L1Md_F2 LINE L1 5920 6579 -3 6 1103 479 394 6 0 chr4 67993265 67993425 -87636695 + RSINE1 SINE B4 3 163 -2 6 1103 21 36 0 0 chr4 67993428 67993456 -87636664 + AT_rich Low_complexity Low_complexity 1 28 0 6 1103 360 122 10 0 chr4 67993531 67993594 -87636526 - L1_Mus4 LINE L1 -360 6276 6227 6 1103 3828 185 13 7 chr4 67993649 67994328 -87635792 - L1_Mur2 LINE L1 -2495 3382 2700 6 1103 2673 106 28 5 chr4 67994328 67994726 -87635394 + MTB_Mm LTR MaLR 1 407 0 6 1103 3828 185 13 7 chr4 67994726 67994878 -87635242 - L1_Mur2 LINE L1 -3178 2699 2546 6 1103 220 0 0 145 chr4 67994881 67994998 -87635122 + (TTTTC)n Simple_repeat Simple_repeat 5 104 0 6 1103 504 48 0 0 chr4 67994998 67995061 -87635059 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1103 6636 118 21 18 chr4 67995061 67996080 -87634040 - Lx LINE L1 -16 6638 5617 6 1103 1382 215 7 3 chr4 67996077 67996376 -87633744 - L1_Mur2 LINE L1 -3327 2550 2251 6 1103 489 271 21 14 chr4 67996602 67996744 -87633376 + B1_Mur2 SINE Alu 2 144 -5 7 1103 23 33 0 0 chr4 67997097 67997127 -87632993 + AT_rich Low_complexity Low_complexity 1 30 0 7 1103 479 357 49 34 chr4 67997163 67997427 -87632693 + B4 SINE B4 1 268 -24 7 1103 435 19 0 0 chr4 67997488 67997540 -87632580 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1103 22 0 0 0 chr4 67997739 67997761 -87632359 + AT_rich Low_complexity Low_complexity 1 22 0 7 1103 1763 153 16 3 chr4 67998438 67998746 -87631374 - Lx2 LINE L1 0 6997 6686 7 1103 705 308 93 72 chr4 67998960 67999034 -87631086 - Lx8 LINE L1 -48 7425 7348 7 1103 531 45 0 0 chr4 67999034 67999100 -87631020 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 7 1103 952 70 62 0 chr4 67999100 67999228 -87630892 - B1_Mm SINE Alu -10 137 2 7 1103 705 308 93 72 chr4 67999228 67999624 -87630496 - Lx8 LINE L1 -126 7347 6945 7 1103 441 0 0 0 chr4 67999631 67999680 -87630440 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1103 222 214 0 0 chr4 67999682 67999738 -87630382 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1103 225 119 0 0 chr4 68000020 68000062 -87630058 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1103 297 361 15 44 chr4 68000126 68000262 -87629858 - B4A SINE B4 -156 136 5 2 1103 441 0 0 0 chr4 68000429 68000478 -87629642 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1103 385 335 36 97 chr4 68002242 68002490 -87627630 + MER34A1 LTR ERV1 2 234 -353 4 1103 3557 69 28 0 chr4 68002550 68003012 -87627108 + MT2C_Mm LTR ERVL 1 475 0 5 1103 8885 113 19 23 chr4 68003396 68003412 -87626708 - Lx3A LINE L1 0 6981 6968 6 1103 266 50 25 0 chr4 68003412 68003452 -87626668 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 7 1103 10585 99 28 12 chr4 68003452 68006105 -87624015 - Lx3A LINE L1 -14 6967 4275 6 1103 34 0 0 0 chr4 68006115 68006149 -87623971 + AT_rich Low_complexity Low_complexity 1 34 0 8 1103 309 118 0 0 chr4 68006398 68006449 -87623671 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 1103 3702 42 7 4 chr4 68006449 68006908 -87623212 - L1Md_F2 LINE L1 -29 6553 6094 1 1103 218 119 0 23 chr4 68007254 68007297 -87622823 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1 1103 973 106 106 0 chr4 68007493 68007558 -87622562 - Lx3A LINE L1 -1613 4273 4209 6 1103 198 0 0 0 chr4 68007558 68007580 -87622540 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1103 973 106 106 0 chr4 68007580 68007674 -87622446 - Lx3A LINE L1 -1678 4208 4098 6 1103 432 0 0 0 chr4 68007718 68007766 -87622354 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 1103 1875 141 9 19 chr4 68007768 68008087 -87622033 - Lx LINE L1 -11 6970 6655 1 1103 3128 116 24 20 chr4 68009630 68010132 -87619988 - Lx LINE L1 -2 6652 6149 1 1103 27 0 0 0 chr4 68010253 68010280 -87619840 + AT_rich Low_complexity Low_complexity 1 27 0 1 1103 378 286 140 32 chr4 68010385 68010450 -87619670 + L1MC1 LINE L1 5715 5779 -554 1 1103 4217 80 8 39 chr4 68010450 68011047 -87619073 + L1_Mus2 LINE L1 5988 6566 0 1 1103 378 286 140 32 chr4 68011047 68011259 -87618861 + L1MC1 LINE L1 5780 6022 -311 1 1103 584 329 134 7 chr4 68011912 68012195 -87617925 - MLT1A1 LTR MaLR -16 392 90 1 1103 358 165 17 17 chr4 68012671 68012788 -87617332 + (CAGA)n Simple_repeat Simple_repeat 2 118 0 1 1103 565 144 0 15 chr4 68012789 68012923 -87617197 + GA-rich Low_complexity Low_complexity 2 133 0 2 1103 240 286 0 0 chr4 68012924 68012996 -87617124 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 2 1103 348 312 94 5 chr4 68013003 68013206 -87616914 + L1MEc LINE L1 1659 1879 -4521 2 1103 606 53 10 21 chr4 68013278 68013375 -87616745 + (GGGA)n Simple_repeat Simple_repeat 2 97 0 2 1103 334 264 78 94 chr4 68013448 68013640 -87616480 + L1MEg LINE L1 1345 1533 -4709 2 1103 210 208 0 0 chr4 68013643 68013691 -87616429 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1103 1333 345 136 34 chr4 68013914 68015008 -87615112 - Lx8 LINE L1 -26 7447 6242 2 1103 941 129 94 6 chr4 68015298 68015469 -87614651 - B2_Mm2 SINE B2 -8 187 2 2 1103 380 373 77 33 chr4 68015574 68015846 -87614274 + B4A SINE B4 1 284 -8 2 1103 452 341 82 24 chr4 68016295 68016887 -87613233 + L1MEg LINE L1 2370 3005 -3141 2 1103 394 346 42 8 chr4 68016902 68017164 -87612956 + L1MEg LINE L1 3112 3382 -2764 2 1103 21 0 0 0 chr4 68017236 68017257 -87612863 + AT_rich Low_complexity Low_complexity 1 21 0 2 1103 374 313 42 21 chr4 68017346 68017532 -87612588 - MTD LTR MaLR -14 405 194 3 1103 461 347 10 63 chr4 68017604 68017810 -87612310 - MTD LTR MaLR -223 196 2 3 1103 425 313 57 79 chr4 68017967 68018283 -87611837 + L1MEg LINE L1 3773 4081 -2065 2 1103 9682 123 33 56 chr4 68018412 68018915 -87611205 + Lx3A LINE L1 4129 4637 -1249 3 1103 252 59 0 0 chr4 68018915 68018949 -87611171 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1103 9682 123 33 56 chr4 68018949 68019745 -87610375 + Lx3A LINE L1 4638 5377 -509 3 1103 4334 111 3 15 chr4 68019745 68020397 -87609723 + L1Md_F2 LINE L1 5939 6582 0 3 1103 9682 146 37 29 chr4 68020397 68021964 -87608156 + Lx3A LINE L1 5378 6974 -7 3 1103 23 68 0 0 chr4 68021976 68022020 -87608100 + AT_rich Low_complexity Low_complexity 1 44 0 3 1103 964 308 7 14 chr4 68022131 68022421 -87607699 + Lx8 LINE L1 6392 6679 -794 3 1103 10791 146 14 5 chr4 68022418 68025092 -87605028 - L1_Mus4 LINE L1 0 6636 3944 3 1103 1266 322 60 22 chr4 68025092 68025674 -87604446 + Lx8 LINE L1 6665 7268 -205 3 1104 26 30 0 0 chr4 68027482 68027515 -87602605 + AT_rich Low_complexity Low_complexity 1 33 0 3 1104 555 16 0 0 chr4 68027894 68027958 -87602162 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 3 1104 3056 283 31 21 chr4 68029153 68030098 -87600022 - Lx6 LINE L1 -889 6571 5618 3 1104 788 329 0 4 chr4 68030097 68030326 -87599794 + Lx6 LINE L1 7229 7456 -4 4 1104 1089 268 19 7 chr4 68031902 68032173 -87597947 - B4 SINE B4 -18 274 1 4 1104 456 312 35 42 chr4 68032501 68032645 -87597475 - B3A SINE B2 -55 143 1 4 1104 236 30 0 29 chr4 68032767 68032801 -87597319 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1104 309 244 36 12 chr4 68033326 68033409 -87596711 + Tigger7 DNA MER2_type 327 411 -2080 4 1104 1401 124 154 34 chr4 68033439 68033705 -87596415 - RLTR10A LTR ERVK 0 411 114 4 1104 917 164 93 7 chr4 68035030 68035325 -87594795 + MTC LTR MaLR 1 408 -13 4 1104 295 289 28 19 chr4 68035809 68035915 -87594205 - MIR3 SINE MIR -18 190 84 4 1104 1200 102 11 5 chr4 68036320 68036507 -87593613 - L1_Mus3 LINE L1 -2 6636 6449 4 1104 1921 126 120 64 chr4 68036614 68037064 -87593056 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1104 339 191 0 0 chr4 68038355 68038423 -87591697 + T-rich Low_complexity Low_complexity 1 68 0 5 1104 409 226 129 0 chr4 68038451 68038544 -87591576 - B1_Mus1 SINE Alu -22 126 22 5 1104 451 319 101 0 chr4 68038544 68038713 -87591407 - Lx6 LINE L1 -222 7238 7053 5 1104 521 264 31 0 chr4 68038709 68038838 -87591282 + Lx6 LINE L1 6402 6534 -926 5 1104 1724 154 55 0 chr4 68038838 68039130 -87590990 - RMER20A LTR ERVK -195 321 14 5 1104 1303 263 109 36 chr4 68039131 68039581 -87590539 + Lx6 LINE L1 6546 7028 -432 5 1104 5864 57 41 18 chr4 68040711 68041526 -87588594 - L1Md_F2 LINE L1 0 6582 5766 5 1104 260 371 117 77 chr4 68041621 68042115 -87588005 + MLT1H LTR MaLR 36 549 0 5 1104 279 0 0 0 chr4 68042171 68042202 -87587918 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 5 1104 26 30 0 0 chr4 68044388 68044421 -87585699 + AT_rich Low_complexity Low_complexity 1 33 0 5 1104 23 0 0 0 chr4 68045072 68045095 -87585025 + AT_rich Low_complexity Low_complexity 1 23 0 5 1104 188 324 29 0 chr4 68045566 68045634 -87584486 - L2 LINE L2 -1545 1874 1805 6 1104 324 0 0 0 chr4 68047176 68047212 -87582908 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1104 1285 239 35 29 chr4 68047389 68047699 -87582421 + Lx4A LINE L1 443 754 -6332 6 1104 4428 197 49 65 chr4 68047701 68048088 -87582032 + RLTR25A LTR ERVK 11 413 -690 6 1104 1724 165 40 0 chr4 68048088 68048385 -87581735 + RLTR27 LTR ERVK 1 309 0 6 1104 4428 197 49 65 chr4 68048385 68048937 -87581183 + RLTR25A LTR ERVK 414 932 -171 6 1104 480 18 0 0 chr4 68048937 68048994 -87581126 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1104 4428 197 49 65 chr4 68048994 68049126 -87580994 + RLTR25A LTR ERVK 933 1066 -37 6 1104 649 216 54 98 chr4 68049144 68049349 -87580771 + Lx4A LINE L1 746 941 -6145 6 1104 496 254 23 15 chr4 68049349 68049373 -87580747 + ID SINE ID 57 81 -143 6 1104 795 92 0 0 chr4 68049373 68049482 -87580638 + B1_Mus1 SINE Alu 3 111 -37 6 1104 17238 149 24 22 chr4 68049486 68053738 -87576382 + Lx4A LINE L1 2769 7040 -18 6 1104 214 190 0 23 chr4 68053740 68053783 -87576337 + GA-rich Low_complexity Low_complexity 3 44 0 6 1104 812 214 47 23 chr4 68056503 68056675 -87573445 + URR1B DNA MER1_type 10 185 -40 6 1104 945 118 0 34 chr4 68057200 68057376 -87572744 + A-rich Low_complexity Low_complexity 4 173 0 7 1104 207 0 0 0 chr4 68057751 68057774 -87572346 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1104 287 304 32 8 chr4 68058483 68058609 -87571511 + L1MB3 LINE L1 5430 5558 -622 7 1104 258 314 22 7 chr4 68059384 68059522 -87570598 + L1MB3 LINE L1 5987 6126 -57 7 1104 198 0 0 0 chr4 68060609 68060631 -87569489 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1104 283 213 26 13 chr4 68060864 68060940 -87569180 + (CATA)n Simple_repeat Simple_repeat 3 79 0 7 1104 384 245 98 0 chr4 68061674 68061817 -87568303 + L1M1 LINE L1 5293 5449 -854 7 1104 325 258 142 53 chr4 68061903 68062185 -87567935 + L1MA6 LINE L1 5994 6300 0 7 1104 5099 60 26 1 chr4 68062253 68062323 -87567797 - L1Md_F2 LINE L1 -2 6580 6511 7 1104 180 0 0 0 chr4 68062323 68062343 -87567777 + (CCCCCT)n Simple_repeat Simple_repeat 3 22 0 7 1104 5099 60 26 1 chr4 68062343 68062926 -87567194 - L1Md_F2 LINE L1 -72 6510 5912 7 1104 10505 63 4 4 chr4 68062926 68064316 -87565804 + L1_Mm LINE L1 3746 5135 -748 7 1104 684 0 0 0 chr4 68064316 68064392 -87565728 + (TTTCC)n Simple_repeat Simple_repeat 5 80 0 8 1104 957 265 8 23 chr4 68064403 68064669 -87565451 - Lx6 LINE L1 -2 7458 7197 8 1104 368 282 0 13 chr4 68066100 68066179 -87563941 - RSINE1 SINE B4 0 165 88 8 1104 212 325 52 0 chr4 68066234 68066311 -87563809 - L2a LINE L2 0 3426 3346 8 1104 190 0 67 0 chr4 68066338 68066368 -87563752 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1104 1594 75 0 5 chr4 68066698 68066913 -87563207 - L1_Mus1 LINE L1 -1 6566 6353 8 1104 2532 65 0 0 chr4 68066913 68067238 -87562882 + L1_Mus2 LINE L1 5754 6078 -488 8 1104 856 235 0 43 chr4 68067761 68067970 -87562150 - Lx4B LINE L1 -5 7053 6854 8 1104 467 112 0 12 chr4 68068080 68068161 -87561959 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 1104 869 254 104 26 chr4 68068324 68068708 -87561412 - L1MA5 LINE L1 -382 5918 5505 8 1104 477 0 0 0 chr4 68068887 68068940 -87561180 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1104 261 98 0 0 chr4 68068940 68068980 -87561140 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1104 5240 115 31 60 chr4 68069118 68069884 -87560236 - Lx3_Mus LINE L1 -518 6491 5754 9 1104 1225 104 11 0 chr4 68069884 68070067 -87560053 - L1_Mus2 LINE L1 -1 6565 6381 9 1104 5240 111 62 0 chr4 68070067 68070279 -87559841 - Lx3_Mus LINE L1 -130 5756 5544 9 1104 3214 132 14 6 chr4 68070279 68070781 -87559339 + Lx3_Mus LINE L1 6504 7009 0 9 1104 1914 227 80 75 chr4 68070947 68071469 -87558651 + RMER20B LTR ERVK 22 555 -72 9 1104 1048 190 140 59 chr4 68071469 68071776 -87558344 + IAPEY3_LTR LTR ERVK 1 332 0 9 1104 1914 227 80 75 chr4 68071776 68071814 -87558306 + RMER20B LTR ERVK 556 585 -42 9 1104 369 267 71 38 chr4 68071871 68072054 -87558066 + RLTR15 LTR ERVK 155 343 -16 9 1104 8711 158 30 11 chr4 68072244 68074500 -87555620 - Lx LINE L1 -3 6651 4355 9 1104 663 279 46 8 chr4 68074827 68075006 -87555114 - B3A SINE B2 -11 182 6 9 1104 202 293 0 0 chr4 68075047 68075105 -87555015 + A-rich Low_complexity Low_complexity 2 59 0 1 1104 567 43 0 0 chr4 68075390 68075460 -87554660 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1104 378 0 0 0 chr4 68077061 68077103 -87553017 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1104 237 391 32 13 chr4 68077354 68077512 -87552608 + L2 LINE L2 2633 2793 -626 1 1104 558 331 59 50 chr4 68077526 68077847 -87552273 - MER47B DNA MER2_type -56 362 39 1 1104 393 22 0 0 chr4 68078566 68078612 -87551508 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1104 369 333 185 22 chr4 68078624 68078808 -87551312 + B4 SINE B4 51 264 -28 1 1104 1299 86 0 6 chr4 68079116 68079292 -87550828 + ORR1A2 LTR MaLR 153 327 0 1 1104 9361 148 115 7 chr4 68079292 68081064 -87549056 + ORR1A2-int LTR MaLR 1 1963 0 1 1104 1665 163 41 38 chr4 68081064 68081382 -87548738 + ORR1A2 LTR MaLR 1 319 -8 1 1104 643 367 11 53 chr4 68082424 68082686 -87547434 + B4A SINE B4 34 284 -8 1 1104 375 89 0 0 chr4 68082691 68082747 -87547373 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1104 281 389 20 20 chr4 68082856 68083003 -87547117 + MIRb SINE MIR 47 193 -75 1 1104 3454 221 58 3 chr4 68083227 68083997 -87546123 + Lx2B LINE L1 6161 6973 -27 1 1104 6152 39 0 0 chr4 68084171 68084896 -87545224 + L1Md_F2 LINE L1 5843 6567 -15 1 1104 208 219 24 0 chr4 68085347 68085429 -87544691 + CT-rich Low_complexity Low_complexity 1 84 0 1 1104 280 327 70 52 chr4 68086327 68086540 -87543580 - MIRb SINE MIR -32 236 20 1 1104 310 322 57 61 chr4 68086553 68086770 -87543350 + MIRc SINE MIR 33 243 -25 1 1104 26 50 0 0 chr4 68087010 68087050 -87543070 + AT_rich Low_complexity Low_complexity 1 40 0 1 1104 35812 57 3 5 chr4 68087114 68092468 -87537652 + L1Md_T LINE L1 284 5586 -297 1 1104 8102 50 0 0 chr4 68092468 68093463 -87536657 + L1Md_T LINE L1 5587 6581 -1 1 1104 238 281 18 0 chr4 68093624 68093681 -87536439 + MIR SINE MIR 90 147 -61 1 1104 312 269 126 46 chr4 68093698 68093873 -87536247 - B3A SINE B2 -4 191 3 1 1104 247 326 28 77 chr4 68093988 68094131 -87535989 + MT2B LTR ERVL 123 258 -343 1 1104 477 274 28 56 chr4 68094036 68094179 -87535941 + B1_Mur2 SINE Alu 10 148 -1 1 1104 235 263 20 29 chr4 68094412 68094514 -87535606 + GA-rich Low_complexity Low_complexity 4 104 0 1 1104 216 307 156 16 chr4 68096189 68096381 -87533739 - L3b LINE CR1 -222 260 42 1 1104 2991 113 53 0 chr4 68097921 68098475 -87531645 + L1_Mus4 LINE L1 5492 6074 -562 1 1104 216 189 54 2 chr4 68098583 68098647 -87531473 - MIRb SINE MIR -99 169 104 1 1104 1013 110 19 0 chr4 68099311 68099525 -87530595 + (TTTC)n Simple_repeat Simple_repeat 1 218 0 1 1104 3002 296 54 72 chr4 68099528 68100125 -87529995 - Lx5 LINE L1 -1 7049 6450 1 1104 749 21 21 0 chr4 68100125 68100219 -87529901 + (TTTC)n Simple_repeat Simple_repeat 4 99 0 1 1104 3002 265 43 53 chr4 68100219 68101243 -87528877 - Lx5 LINE L1 -601 6449 5445 1 1104 24 0 0 0 chr4 68102112 68102136 -87527984 + AT_rich Low_complexity Low_complexity 1 24 0 1 1104 188 328 36 116 chr4 68102746 68102884 -87527236 - L3b LINE CR1 -8 474 348 1 1104 732 12 0 0 chr4 68102927 68103012 -87527108 + (TTC)n Simple_repeat Simple_repeat 2 86 0 1 1104 2340 135 13 5 chr4 68103128 68103501 -87526619 - Lx LINE L1 -7 6647 6272 1 1104 357 187 0 0 chr4 68104421 68104496 -87525624 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1104 521 257 47 26 chr4 68104496 68104688 -87525432 - MER63D DNA AcHobo -813 248 53 1 1104 868 298 14 5 chr4 68104793 68105012 -87525108 - MTC LTR MaLR -8 413 193 1 1104 2625 113 36 7 chr4 68105020 68105438 -87524682 - Lx3_Mus LINE L1 -8 7001 6572 1 1104 3723 68 0 8 chr4 68105437 68105928 -87524192 - L1Md_F2 LINE L1 -12 6570 6084 1 1104 3174 116 8 0 chr4 68105928 68106402 -87523718 - Lx3_Mus LINE L1 -439 6570 6093 1 1104 274 298 105 90 chr4 68106404 68106537 -87523583 - MTC LTR MaLR -200 207 73 1 1104 1532 182 13 38 chr4 68106569 68106883 -87523237 - Lx2A1 LINE L1 -24 6984 6679 1 1104 403 252 24 31 chr4 68106895 68107022 -87523098 - MTC LTR MaLR -295 126 1 1 1104 743 32 11 0 chr4 68107035 68107129 -87522991 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1104 7309 57 5 1 chr4 68107205 68108130 -87521990 + L1Md_F2 LINE L1 4657 5585 -298 1 1104 8011 52 3 1 chr4 68108131 68109125 -87520995 + L1Md_F2 LINE L1 5587 6582 0 1 1104 418 363 36 86 chr4 68109391 68109554 -87520566 + B4 SINE B4 3 175 -117 1 1104 2884 101 10 0 chr4 68109554 68109971 -87520149 - BGLII LTR ERVK 0 421 1 1 1104 418 363 36 86 chr4 68109971 68110111 -87520009 + B4 SINE B4 176 291 -1 1 1104 23 33 0 0 chr4 68110171 68110201 -87519919 + AT_rich Low_complexity Low_complexity 1 30 0 1 1104 396 313 58 58 chr4 68110285 68110580 -87519540 + MamRep434 DNA TcMar 38 332 -94 1 1104 429 303 45 73 chr4 68111642 68111820 -87518300 + MER5B DNA MER1_type 5 177 -1 1 1104 5661 82 13 8 chr4 68112078 68112859 -87517261 - L1Md_F2 LINE L1 0 6582 5798 1 1104 3283 41 3 0 chr4 68112859 68113250 -87516870 + L1Md_F2 LINE L1 5415 5806 -77 1 1104 417 280 53 0 chr4 68114343 68114493 -87515627 + Lx6 LINE L1 7277 7434 -26 1 1104 42 0 0 0 chr4 68115816 68115858 -87514262 + AT_rich Low_complexity Low_complexity 1 42 0 1 1104 233 128 21 0 chr4 68115858 68115905 -87514215 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1104 1168 194 182 3 chr4 68115927 68116212 -87513908 - Lx5 LINE L1 0 7050 6715 1 1104 1617 232 19 28 chr4 68116208 68116572 -87513548 - Lx5 LINE L1 -523 6527 6167 1 1104 195 254 93 53 chr4 68116791 68116866 -87513254 + MIRb SINE MIR 176 253 -15 1 1104 22 0 0 0 chr4 68117018 68117040 -87513080 + AT_rich Low_complexity Low_complexity 1 22 0 1 1104 486 0 0 0 chr4 68118131 68118185 -87511935 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1104 412 379 48 33 chr4 68118396 68118744 -87511376 + MTD LTR MaLR 40 419 0 1 1104 297 0 0 0 chr4 68118892 68118925 -87511195 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1104 187 149 53 13 chr4 68120319 68120394 -87509726 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 1 1104 283 351 0 11 chr4 68120526 68120621 -87509499 - PB1 SINE Alu 0 127 34 1 1104 488 330 98 14 chr4 68121031 68121246 -87508874 + Lx8 LINE L1 6858 7090 -383 1 1104 2697 213 18 66 chr4 68121310 68121989 -87508131 + Lx2B LINE L1 6337 6982 -18 1 1104 851 301 58 24 chr4 68122049 68122379 -87507741 + Lx8 LINE L1 7131 7471 -2 1 1104 216 0 0 0 chr4 68122607 68122631 -87507489 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1104 188 347 160 8 chr4 68122894 68123013 -87507107 - MIRm SINE MIR -123 153 17 1 1104 1243 289 118 35 chr4 68124535 68125134 -87504986 - Lx8 LINE L1 0 7473 6825 1 1104 3738 273 35 8 chr4 68125410 68126715 -87503405 - RMER1A Other Other -5 1025 1 1 1104 342 0 0 0 chr4 68127175 68127213 -87502907 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1104 1066 272 39 27 chr4 68127535 68127982 -87502138 - Lx7 LINE L1 -1685 6011 5591 1 1104 216 0 0 0 chr4 68128089 68128113 -87502007 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1104 496 307 7 14 chr4 68128131 68128270 -87501850 - B1F SINE Alu 0 149 12 1 1104 199 0 65 0 chr4 68128288 68128319 -87501801 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1104 323 366 70 26 chr4 68128500 68128730 -87501390 + Charlie1a DNA MER1_type 2 241 -1214 1 1104 621 40 0 0 chr4 68128964 68129040 -87501080 + (TAA)n Simple_repeat Simple_repeat 3 78 0 1 1104 11878 168 15 51 chr4 68129264 68132731 -87497389 - Lx LINE L1 -14 6640 3305 1 1104 3273 103 28 6 chr4 68132724 68133027 -87497093 + MusHAL1 LINE L1 1292 1595 -1117 1 1104 207 0 0 0 chr4 68133027 68133050 -87497070 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1104 3273 103 28 6 chr4 68133050 68133245 -87496875 + MusHAL1 LINE L1 1596 1801 -911 1 1104 690 330 38 5 chr4 68133372 68133558 -87496562 - B3 SINE B2 0 216 25 1 1104 390 306 48 0 chr4 68133600 68133724 -87496396 - ID_B1 SINE B4 -5 219 90 1 1104 271 331 38 30 chr4 68134193 68134324 -87495796 + MIRb SINE MIR 25 156 -112 1 1104 332 347 13 32 chr4 68134504 68134659 -87495461 - L4 LINE RTE -1487 542 391 1 1104 6992 118 50 20 chr4 68135097 68137030 -87493090 + L1VL2 LINE L1 94 2091 -1524 1 1104 5684 159 41 63 chr4 68137027 68138854 -87491266 + Lx LINE L1 4764 6620 -34 1 1104 396 0 0 0 chr4 68138855 68138899 -87491221 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1104 649 293 62 5 chr4 68139083 68139292 -87490828 - MTE2a LTR MaLR -156 223 3 1 1104 279 0 0 0 chr4 68139428 68139459 -87490661 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1104 223 282 13 13 chr4 68139470 68139549 -87490571 + GA-rich Low_complexity Low_complexity 2 80 0 1 1104 225 0 0 0 chr4 68139861 68139886 -87490234 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1104 216 0 0 0 chr4 68140818 68140842 -87489278 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1104 211 200 42 28 chr4 68141017 68141035 -87489085 + (TAAA)n Simple_repeat Simple_repeat 1 17 0 1 1104 305 265 254 41 chr4 68141035 68141204 -87488916 - B3 SINE B2 -10 206 2 1 1104 211 200 42 28 chr4 68141204 68141257 -87488863 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1 1104 198 367 28 0 chr4 68141753 68141862 -87488258 - MIR SINE MIR -46 216 105 1 1104 857 356 35 14 chr4 68141883 68142231 -87487889 - MLT1A0 LTR MaLR 0 365 11 1 1104 544 334 48 3 chr4 68143713 68144035 -87486085 - MTE2b LTR MaLR -15 364 6 1 1104 200 288 27 55 chr4 68144198 68144308 -87485812 - L2a LINE L2 -100 3326 3220 1 1104 281 378 0 62 chr4 68146523 68146667 -87483453 - B1_Mus1 SINE Alu -3 145 11 1 1104 195 246 0 0 chr4 68147200 68147257 -87482863 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1104 474 388 39 35 chr4 68147297 68147583 -87482537 - B4A SINE B4 -2 290 4 1 1104 22 70 0 0 chr4 68148314 68148357 -87481763 + AT_rich Low_complexity Low_complexity 1 43 0 1 1104 531 0 0 0 chr4 68148643 68148702 -87481418 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 1104 758 11 11 0 chr4 68148943 68149034 -87481086 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 1104 2465 70 33 3 chr4 68149831 68150162 -87479958 - L1_Mus2 LINE L1 -1 6565 6225 2 1104 277 316 12 12 chr4 68150490 68150570 -87479550 - ORR1E LTR MaLR -278 81 2 2 1104 237 65 0 0 chr4 68150600 68150631 -87479489 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2 1104 387 0 0 0 chr4 68151600 68151643 -87478477 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1104 456 19 0 0 chr4 68153585 68153638 -87476482 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1104 456 318 17 28 chr4 68153763 68153941 -87476179 - B4 SINE B4 -116 176 1 2 1104 1142 28 0 0 chr4 68154539 68154682 -87475438 - L1Md_A LINE L1 0 6582 6440 2 1104 239 382 18 115 chr4 68154753 68155031 -87475089 + MIR SINE MIR 1 251 -11 2 1104 308 364 40 73 chr4 68155162 68155313 -87474807 + B3 SINE B2 20 165 -51 2 1104 796 124 15 0 chr4 68155330 68155467 -87474653 + (GGGAGA)n Simple_repeat Simple_repeat 6 144 0 2 1104 198 0 0 0 chr4 68155669 68155691 -87474429 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1104 576 0 0 0 chr4 68156675 68156739 -87473381 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1104 347 137 31 21 chr4 68157052 68157149 -87472971 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 2 1105 243 0 0 0 chr4 68158155 68158182 -87471938 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1105 249 159 0 0 chr4 68159462 68159525 -87470595 + GA-rich Low_complexity Low_complexity 2 64 0 2 1105 285 360 36 0 chr4 68159663 68159774 -87470346 + MLT1J-int LTR MaLR 814 928 -459 2 1105 1661 222 47 129 chr4 68160185 68160743 -87469377 - Lx2 LINE L1 -3 6994 6483 2 1105 2534 101 146 4 chr4 68160742 68161228 -87468892 + L1_Mus3 LINE L1 5606 6501 -507 2 1105 265 238 139 23 chr4 68162979 68163060 -87467060 - L1M2 LINE L1 -564 5736 5653 2 1105 465 19 0 0 chr4 68163060 68163114 -87467006 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2 1105 265 238 139 23 chr4 68163114 68163161 -87466959 - L1M2 LINE L1 -648 5652 5594 2 1105 27 29 0 0 chr4 68163246 68163280 -87466840 + AT_rich Low_complexity Low_complexity 1 34 0 2 1105 7436 145 37 31 chr4 68163282 68164591 -87465529 - Lx3B LINE L1 -3 6970 5655 2 1105 393 306 0 0 chr4 68164833 68164944 -87465176 - PB1D10 SINE Alu -1 116 6 2 1105 230 278 151 5 chr4 68165002 68165201 -87464919 - L1M2 LINE L1 -942 5198 4971 2 1105 225 0 0 0 chr4 68165303 68165328 -87464792 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1105 1836 296 45 13 chr4 68165343 68165878 -87464242 - Lx6 LINE L1 -30 7430 6879 2 1105 666 174 0 0 chr4 68165878 68166016 -87464104 + CT-rich Low_complexity Low_complexity 2 139 0 2 1105 2983 29 0 0 chr4 68166016 68166362 -87463758 + ORR1A0 LTR MaLR 1 346 0 2 1105 587 233 26 20 chr4 68166362 68166515 -87463605 - Lx6 LINE L1 -566 6894 6741 2 1105 510 188 0 0 chr4 68166519 68166620 -87463500 + CT-rich Low_complexity Low_complexity 2 102 0 2 1105 1661 236 65 2 chr4 68166620 68167037 -87463083 - Lx6 LINE L1 -705 6755 6313 2 1105 265 294 79 29 chr4 68167036 68167176 -87462944 + Lx6 LINE L1 6049 6195 -1265 2 1105 260 213 0 0 chr4 68167193 68167240 -87462880 + Lx7 LINE L1 6250 6296 -1400 2 1105 260 311 48 0 chr4 68167250 68167353 -87462767 - L1M2 LINE L1 -1280 4863 4756 2 1105 2752 106 2 2 chr4 68167633 68168041 -87462079 - L1_Mm LINE L1 -528 5355 4948 2 1105 3212 76 35 48 chr4 68168041 68168523 -87461597 + L1_Mus2 LINE L1 6089 6564 -2 2 1105 399 303 40 16 chr4 68168536 68168660 -87461460 + RSINE1 SINE B4 11 137 -28 2 1105 381 318 31 36 chr4 68168686 68168908 -87461212 + L1MA9 LINE L1 6011 6231 -81 2 1105 195 114 0 0 chr4 68169286 68169321 -87460799 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1105 237 33 0 0 chr4 68171056 68171086 -87459034 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 2 1105 5851 40 1 8 chr4 68171474 68172236 -87457884 + L1Md_F3 LINE L1 5858 6584 0 2 1105 378 0 0 0 chr4 68173073 68173115 -87457005 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1105 281 371 29 40 chr4 68173175 68173349 -87456771 + MIRb SINE MIR 9 180 -88 2 1105 3441 72 2 5 chr4 68174969 68175443 -87454677 - L1_Mus1 LINE L1 0 6567 6104 2 1105 475 152 11 11 chr4 68175656 68175749 -87454371 - Lx5 LINE L1 -1073 5977 5885 2 1105 1111 229 36 120 chr4 68175741 68175977 -87454143 - Lx5 LINE L1 -219 5658 5436 2 1105 1364 39 22 0 chr4 68175977 68176155 -87453965 + L1Md_F3 LINE L1 6401 6582 -2 2 1105 1111 229 36 120 chr4 68176155 68176310 -87453810 - Lx5 LINE L1 -442 5435 5300 2 1105 2981 299 67 21 chr4 68176312 68177319 -87452801 + Lx5 LINE L1 5998 7050 0 2 1105 227 222 0 0 chr4 68177623 68177668 -87452452 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1105 210 37 0 0 chr4 68178747 68178774 -87451346 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2 1105 204 302 0 0 chr4 68180240 68180303 -87449817 + T-rich Low_complexity Low_complexity 1 63 0 2 1105 1064 310 76 14 chr4 68180702 68181059 -87449061 - MTE2b LTR MaLR 0 379 1 2 1105 11433 165 51 121 chr4 68181347 68181644 -87448476 + Lx3C LINE L1 3023 3319 -2567 2 1105 2111 119 3 9 chr4 68181644 68181974 -87448146 - L1_Mus3 LINE L1 -11 6627 6300 2 1105 11433 165 51 121 chr4 68181974 68182876 -87447244 + Lx3C LINE L1 3320 4304 -1582 2 1105 3497 89 8 2 chr4 68182876 68183360 -87446760 - L1_Mus3 LINE L1 -4 6634 6148 2 1105 11433 170 45 78 chr4 68183360 68186293 -87443827 + Lx3C LINE L1 4305 6976 0 2 1105 207 0 0 0 chr4 68186726 68186749 -87443371 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1105 907 70 47 0 chr4 68186750 68186879 -87443241 + B1_Mus1 SINE Alu 1 135 -13 2 1105 219 69 0 0 chr4 68186880 68186909 -87443211 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 1105 435 253 63 54 chr4 68187243 68187448 -87442672 + L1MB2 LINE L1 5963 6169 -2 2 1105 21 0 0 0 chr4 68187494 68187515 -87442605 + AT_rich Low_complexity Low_complexity 1 21 0 2 1105 571 348 13 0 chr4 68187565 68187723 -87442397 + B3 SINE B2 7 166 -50 2 1105 5440 145 6 12 chr4 68190621 68191473 -87438647 + MERVL_2A-int LTR ERVL 2201 3047 -2714 2 1105 2561 170 28 133 chr4 68191474 68192091 -87438029 + ORR1A4-int LTR MaLR 1241 1792 0 2 1105 485 129 0 0 chr4 68192093 68192178 -87437942 + ORR1A4 LTR MaLR 3 87 -242 2 1105 375 330 10 0 chr4 68192303 68192406 -87437714 + ID_B1 SINE B4 100 203 -21 2 1105 614 118 10 0 chr4 68193573 68193675 -87436445 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 2 1105 3082 52 31 0 chr4 68194440 68194827 -87435293 - L1Md_F2 LINE L1 -19 6563 6165 2 1105 1533 27 0 0 chr4 68194927 68195112 -87435008 - L1_Mm LINE L1 -2001 3882 3698 2 1105 2068 42 12 0 chr4 68195108 68195367 -87434753 + L1Md_T LINE L1 4296 4557 -1326 2 1105 1906 31 0 0 chr4 68195362 68195584 -87434536 + L1Md_T LINE L1 5365 5586 -297 2 1105 8356 39 0 0 chr4 68195584 68196580 -87433540 + L1Md_T LINE L1 5587 6582 0 2 1105 210 192 38 19 chr4 68198093 68198146 -87431974 + MIRc SINE MIR 215 268 0 2 1105 404 369 85 8 chr4 68198801 68199036 -87431084 + L4 LINE RTE 1356 1608 -421 2 1105 5762 70 1 3 chr4 68199978 68200734 -87429386 - L1Md_F2 LINE L1 0 6582 5828 2 1105 270 136 0 0 chr4 68200924 68200968 -87429152 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 1105 311 149 14 0 chr4 68202023 68202097 -87428023 + GA-rich Low_complexity Low_complexity 1 75 0 2 1105 22 35 0 0 chr4 68202114 68202143 -87427977 + AT_rich Low_complexity Low_complexity 1 29 0 2 1105 399 232 0 24 chr4 68202507 68202591 -87427529 + B1F SINE Alu 68 149 0 2 1105 259 303 18 35 chr4 68203119 68203232 -87426888 - MIRb SINE MIR -98 170 60 2 1105 186 71 0 0 chr4 68204016 68204044 -87426076 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1105 465 19 0 0 chr4 68204197 68204251 -87425869 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1105 198 0 0 0 chr4 68204251 68204272 -87425848 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1105 2694 109 21 21 chr4 68204311 68204743 -87425377 - RLTR13C1 LTR ERVK 0 983 552 2 1105 1233 290 73 10 chr4 68206060 68206443 -87423677 - MTC LTR MaLR -14 407 1 2 1105 392 0 21 0 chr4 68206462 68206510 -87423610 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1105 728 270 49 15 chr4 68207158 68207361 -87422759 + B3 SINE B2 1 210 -6 2 1105 245 414 13 26 chr4 68207529 68207685 -87422435 - MIRb SINE MIR -77 191 38 2 1105 23 54 0 0 chr4 68207745 68207782 -87422338 + AT_rich Low_complexity Low_complexity 1 37 0 2 1105 186 250 0 0 chr4 68207848 68207888 -87422232 - L3b LINE CR1 -6 476 437 2 1105 271 342 70 38 chr4 68208080 68208238 -87421882 + Charlie16a DNA MER1_type 143 305 -37 2 1105 2730 133 8 38 chr4 68208936 68209413 -87420707 + Lx LINE L1 6184 6646 -8 2 1105 274 368 0 0 chr4 68210353 68210467 -87419653 + MER58A DNA MER1_type 20 133 -91 2 1105 192 279 73 37 chr4 68213238 68213320 -87416800 + MIRm SINE MIR 99 183 -93 2 1105 354 268 0 0 chr4 68213406 68213477 -87416643 - ID4 SINE ID -10 73 3 2 1105 387 321 29 15 chr4 68213524 68213677 -87416443 - MLT1A LTR MaLR -24 384 233 2 1105 262 86 0 0 chr4 68213971 68214006 -87416114 + U2 snRNA snRNA 1 35 -153 2 1105 592 46 35 0 chr4 68214187 68214274 -87415846 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 2 1105 378 0 0 0 chr4 68214477 68214519 -87415601 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1105 410 306 43 29 chr4 68215254 68215392 -87414728 + B1F1 SINE Alu 9 148 -1 2 1105 1138 69 69 0 chr4 68215446 68215605 -87414515 - L1_Mus3 LINE L1 -164 6474 6305 2 1105 1031 105 35 6 chr4 68215605 68215777 -87414343 + L1_Mus3 LINE L1 6459 6635 -3 2 1105 21 36 0 0 chr4 68216034 68216062 -87414058 + AT_rich Low_complexity Low_complexity 1 28 0 2 1105 207 0 0 0 chr4 68217323 68217346 -87412774 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1105 649 274 136 117 chr4 68217713 68218081 -87412039 + MTE2b LTR MaLR 3 377 -2 2 1105 371 339 140 13 chr4 68218469 68218705 -87411415 + L3 LINE CR1 4144 4409 -80 2 1105 667 284 86 33 chr4 68219098 68219342 -87410778 + MTEa LTR MaLR 1 257 -122 2 1105 3035 201 4 77 chr4 68220692 68221392 -87408728 - RMER1B Other Other -55 1011 363 2 1105 1806 248 85 49 chr4 68221410 68221902 -87408218 - RMER1B Other Other -555 511 2 2 1105 1116 161 9 5 chr4 68221955 68222167 -87407953 - Lx LINE L1 -6 6648 6436 2 1105 818 166 66 0 chr4 68222265 68222416 -87407704 - ORR1B1 LTR MaLR -88 306 146 3 1105 228 100 0 0 chr4 68222520 68222560 -87407560 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1105 1410 260 44 18 chr4 68223580 68223968 -87406152 - MTD LTR MaLR -2 417 20 3 1105 375 73 0 0 chr4 68224036 68224091 -87406029 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1105 846 83 0 0 chr4 68224091 68224223 -87405897 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1105 227 320 40 0 chr4 68224840 68224965 -87405155 - L1MC4 LINE L1 -681 7361 7232 3 1105 747 313 47 31 chr4 68225267 68225521 -87404599 - MTE2b LTR MaLR -65 314 57 3 1105 295 316 36 0 chr4 68225579 68225718 -87404402 + L1M4 LINE L1 2680 2823 -3323 3 1105 22 0 0 0 chr4 68226504 68226526 -87403594 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 1482 130 8 20 chr4 68227419 68227671 -87402449 + L1_Mus3 LINE L1 6374 6622 -16 3 1105 453 328 112 78 chr4 68228667 68228882 -87401238 + ORR1E LTR MaLR 1 225 -134 3 1105 312 111 0 0 chr4 68228882 68228936 -87401184 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1105 453 328 112 78 chr4 68228936 68229067 -87401053 + ORR1E LTR MaLR 226 359 0 3 1105 408 408 19 26 chr4 68229666 68229822 -87400298 + RSINE1 SINE B4 9 163 -2 3 1105 232 195 0 115 chr4 68229766 68229853 -87400267 + B2_Mm2 SINE B2 99 175 -20 3 1105 233 193 11 46 chr4 68230295 68230382 -87399738 + Lx9 LINE L1 7433 7516 -128 3 1105 353 265 73 13 chr4 68230480 68230604 -87399516 - RMER12 LTR ERVK -470 852 750 3 1105 237 306 0 23 chr4 68230611 68230698 -87399422 + (TATG)n Simple_repeat Simple_repeat 2 86 0 3 1105 279 0 0 0 chr4 68230720 68230751 -87399369 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1105 414 0 0 0 chr4 68230795 68230841 -87399279 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1105 276 333 36 9 chr4 68231044 68231156 -87398964 - ID_B1 SINE B4 -27 197 83 3 1105 464 325 94 55 chr4 68232307 68232669 -87397451 - MLT1B LTR MaLR -1 389 14 3 1105 393 58 0 0 chr4 68232742 68232794 -87397326 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1105 614 95 11 0 chr4 68234164 68234259 -87395861 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 3 1105 845 252 75 4 chr4 68234261 68234488 -87395632 - Lx5 LINE L1 0 7050 6808 3 1105 263 321 9 54 chr4 68235435 68235547 -87394573 + MIRb SINE MIR 20 126 -142 3 1105 208 294 0 0 chr4 68236489 68236540 -87393580 + MIRc SINE MIR 217 267 -1 3 1105 336 24 0 0 chr4 68236748 68236789 -87393331 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1105 471 35 0 0 chr4 68236789 68236845 -87393275 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1105 315 96 0 0 chr4 68237236 68237288 -87392832 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1105 302 332 106 21 chr4 68238712 68238900 -87391220 + MIR SINE MIR 2 205 -57 3 1105 558 311 71 0 chr4 68239058 68239283 -87390837 + Lx8 LINE L1 6772 7012 -461 3 1105 5039 120 60 85 chr4 68239289 68240202 -87389918 - Lx3_Mus LINE L1 -949 6060 5171 3 1105 1337 30 6 0 chr4 68240202 68240368 -87389752 + (TC)n Simple_repeat Simple_repeat 2 168 0 3 1105 1101 167 0 0 chr4 68240377 68240551 -87389569 - MTC LTR MaLR -52 369 196 3 1105 5039 152 109 137 chr4 68240551 68240897 -87389223 - Lx3_Mus LINE L1 -716 5158 4670 3 1105 701 118 18 18 chr4 68240897 68241009 -87389111 + PB1D9 SINE Alu 2 113 -7 3 1105 5039 152 109 137 chr4 68241009 68241383 -87388737 - Lx3_Mus LINE L1 -1217 4669 4309 3 1105 3128 101 21 37 chr4 68241375 68241965 -87388155 - Lx3_Mus LINE L1 -4215 1671 1035 3 1105 3941 67 27 6 chr4 68241965 68242487 -87387633 - L1Md_F2 LINE L1 -4 6578 6046 3 1105 3128 173 110 36 chr4 68242487 68243089 -87387031 - Lx3_Mus LINE L1 -5950 1034 39 3 1105 259 332 94 24 chr4 68243519 68243732 -87386388 + MIRb SINE MIR 40 267 -1 3 1105 369 62 0 0 chr4 68244117 68244165 -87385955 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3 1105 205 211 0 0 chr4 68244887 68244925 -87385195 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1105 23 54 0 0 chr4 68246645 68246682 -87383438 + AT_rich Low_complexity Low_complexity 1 37 0 3 1105 363 322 90 37 chr4 68248005 68248250 -87381870 + MLT1A LTR MaLR 85 342 -32 3 1105 29 47 0 0 chr4 68248390 68248433 -87381687 + AT_rich Low_complexity Low_complexity 1 43 0 3 1105 277 268 89 8 chr4 68248543 68248667 -87381453 + L1M5 LINE L1 5645 5778 -401 3 1105 296 374 60 88 chr4 68248681 68248863 -87381257 + MTEa LTR MaLR 1 177 -202 3 1105 217 132 0 0 chr4 68248914 68248952 -87381168 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1105 269 352 29 117 chr4 68248953 68249159 -87380961 + MLT2B3 LTR ERVL 269 456 -98 3 1105 378 0 0 0 chr4 68249189 68249231 -87380889 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1105 298 288 0 0 chr4 68249436 68249509 -87380611 + B4 SINE B4 1 73 -219 3 1105 287 337 35 11 chr4 68249509 68249683 -87380437 + Lx9 LINE L1 7188 7365 -279 3 1105 1100 259 71 58 chr4 68249684 68250048 -87380072 - ORR1D1 LTR MaLR -5 369 1 3 1105 273 261 11 98 chr4 68250050 68250224 -87379896 + Lx9 LINE L1 7359 7517 -127 3 1105 320 262 56 39 chr4 68250196 68250375 -87379745 + Lx9 LINE L1 7458 7639 -5 3 1105 336 235 239 24 chr4 68250396 68250605 -87379515 + Lx5 LINE L1 6797 7050 0 3 1105 189 0 0 0 chr4 68250640 68250661 -87379459 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 3 1105 609 319 18 0 chr4 68250691 68250857 -87379263 + B4 SINE B4 123 291 -1 3 1105 252 0 0 0 chr4 68251051 68251079 -87379041 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1105 1262 304 131 14 chr4 68251082 68251646 -87378474 - Lx8 LINE L1 -144 7329 6700 3 1105 24 32 0 0 chr4 68251646 68251677 -87378443 + AT_rich Low_complexity Low_complexity 1 31 0 3 1105 1868 170 45 17 chr4 68251683 68252036 -87378084 - Lx3C LINE L1 -65 6911 6549 3 1105 1858 126 66 32 chr4 68252036 68252414 -87377706 + Lx3C LINE L1 5863 6253 -723 3 1105 720 338 30 17 chr4 68252412 68252773 -87377347 - Lx8 LINE L1 -764 6709 6344 3 1105 286 270 88 36 chr4 68252841 68253033 -87377087 - L1MA5 LINE L1 -6 6294 6093 3 1105 22 70 0 0 chr4 68253174 68253217 -87376903 + AT_rich Low_complexity Low_complexity 1 43 0 3 1105 225 0 0 0 chr4 68254229 68254254 -87375866 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1105 640 317 105 69 chr4 68254718 68255213 -87374907 + Lx8 LINE L1 6878 7390 -83 3 1105 541 293 43 46 chr4 68255857 68256161 -87373959 - L1ME4a LINE L1 -237 5887 5585 3 1105 369 386 38 19 chr4 68256234 68256445 -87373675 - MIRb SINE MIR -40 228 14 3 1105 180 200 0 24 chr4 68258127 68258168 -87371952 + L2a LINE L2 3382 3421 -5 3 1105 1561 124 8 4 chr4 68259014 68259256 -87370864 - L1_Mus3 LINE L1 -2 6636 6394 3 1105 665 193 7 0 chr4 68260452 68260602 -87369518 + (TA)n Simple_repeat Simple_repeat 2 152 0 3 1105 201 279 49 0 chr4 68260603 68260664 -87369456 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 3 1105 977 239 115 14 chr4 68260678 68261076 -87369044 + Lx5 LINE L1 5818 6303 -755 3 1105 290 250 47 0 chr4 68261496 68261560 -87368560 - ID SINE ID -157 67 1 3 1105 381 22 0 0 chr4 68261638 68261684 -87368436 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1105 22 35 0 0 chr4 68261692 68261721 -87368399 + AT_rich Low_complexity Low_complexity 1 29 0 3 1105 461 297 44 22 chr4 68261932 68262159 -87367961 + L1MA7 LINE L1 6051 6282 -9 3 1105 256 344 55 23 chr4 68262580 68262708 -87367412 + B1F SINE Alu 16 147 -2 3 1105 473 346 6 25 chr4 68262716 68262876 -87367244 + B4A SINE B4 4 160 -132 3 1105 281 207 85 17 chr4 68262893 68262952 -87367168 + B4A SINE B4 210 272 -20 3 1105 420 20 0 0 chr4 68262996 68263045 -87367075 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1105 30 45 0 0 chr4 68263279 68263323 -87366797 + AT_rich Low_complexity Low_complexity 1 44 0 3 1105 415 0 18 18 chr4 68264110 68264166 -87365954 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1105 192 184 0 0 chr4 68264196 68264245 -87365875 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1105 2840 101 17 0 chr4 68265526 68265942 -87364178 - Lx3_Mus LINE L1 0 7009 6587 3 1105 389 349 68 7 chr4 68266149 68266296 -87363824 + RSINE1 SINE B4 3 158 -7 3 1105 210 71 0 0 chr4 68267059 68267087 -87363033 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1105 301 327 18 48 chr4 68267222 68267389 -87362731 - RSINE1 SINE B4 0 165 4 3 1105 472 15 31 0 chr4 68267819 68267884 -87362236 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1105 278 289 72 32 chr4 68268765 68268890 -87361230 + MTEa LTR MaLR 238 367 -12 3 1105 1046 91 7 0 chr4 68269042 68269185 -87360935 + B1_Mus1 SINE Alu 5 148 0 3 1105 216 86 0 0 chr4 68269187 68269222 -87360898 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 3 1105 414 39 0 0 chr4 68269267 68269319 -87360801 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 3 1105 1124 269 67 35 chr4 68269400 68269966 -87360154 + L1MD LINE L1 3266 3849 -2297 3 1105 344 352 0 7 chr4 68270438 68270578 -87359542 - B1F SINE Alu -10 139 1 3 1105 603 0 0 0 chr4 68270749 68270816 -87359304 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1105 396 0 0 0 chr4 68270817 68270861 -87359259 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1105 1048 97 0 0 chr4 68271022 68271166 -87358954 + B1_Mus1 SINE Alu 5 148 0 3 1105 322 341 90 30 chr4 68271252 68271485 -87358635 + L1MD LINE L1 3892 4138 -2008 3 1105 1138 259 119 42 chr4 68271501 68272189 -87357931 + L1MD LINE L1 4124 4864 -1282 3 1105 28 48 0 0 chr4 68272532 68272574 -87357546 + AT_rich Low_complexity Low_complexity 1 42 0 3 1105 318 250 93 10 chr4 68272918 68273015 -87357105 + B1F SINE Alu 37 141 -8 3 1105 239 319 11 11 chr4 68273094 68273189 -87356931 + GA-rich Low_complexity Low_complexity 2 96 0 3 1105 309 51 0 0 chr4 68273967 68274006 -87356114 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1105 1193 34 7 0 chr4 68274006 68274153 -87355967 - B1_Mus1 SINE Alu 0 148 1 3 1105 22 56 0 0 chr4 68274581 68274617 -87355503 + AT_rich Low_complexity Low_complexity 1 36 0 3 1105 483 101 0 0 chr4 68275165 68275244 -87354876 + (TCTG)n Simple_repeat Simple_repeat 4 82 0 3 1105 391 361 44 57 chr4 68275291 68275520 -87354600 - B4 SINE B4 -62 230 5 4 1105 653 181 8 0 chr4 68275549 68275682 -87354438 + CT-rich Low_complexity Low_complexity 1 134 0 4 1105 2417 111 14 3 chr4 68276088 68276457 -87353663 + L1_Mus3 LINE L1 6260 6632 -6 4 1105 201 159 0 0 chr4 68276665 68276709 -87353411 + T-rich Low_complexity Low_complexity 4 47 0 4 1105 391 300 0 97 chr4 68277435 68277579 -87352541 - RSINE1 SINE B4 -23 142 13 4 1105 212 167 24 0 chr4 68277655 68277697 -87352423 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1105 1129 330 14 11 chr4 68278124 68278479 -87351641 + MTD LTR MaLR 1 356 -63 4 1105 426 183 76 97 chr4 68278632 68278777 -87351343 + B1_Mur4 SINE Alu 2 143 -7 4 1105 215 152 22 0 chr4 68278777 68278823 -87351297 + GA-rich Low_complexity Low_complexity 2 48 0 4 1105 271 346 0 0 chr4 68279134 68279215 -87350905 + ID4 SINE ID 1 81 -2 4 1105 257 315 60 69 chr4 68280629 68280745 -87349375 + MIR SINE MIR 19 133 -75 4 1105 293 330 0 0 chr4 68281123 68281229 -87348891 + (CAT)n Simple_repeat Simple_repeat 3 108 0 4 1105 580 355 22 22 chr4 68282472 68282694 -87347426 + B4A SINE B4 53 274 -18 4 1105 222 128 0 0 chr4 68282765 68282804 -87347316 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1105 205 299 12 38 chr4 68284989 68285069 -87345051 + MIRb SINE MIR 183 260 -8 4 1105 991 348 41 35 chr4 68285377 68285913 -87344207 + Lx8 LINE L1 6700 7238 -235 4 1105 612 249 142 0 chr4 68285933 68286222 -87343898 - Lx9 LINE L1 -2 7642 7313 4 1105 1544 255 47 19 chr4 68286191 68286614 -87343506 - Lx9 LINE L1 -594 7050 6616 4 1105 354 348 8 0 chr4 68286633 68286751 -87343369 + Lx8 LINE L1 7191 7309 -164 4 1105 6698 132 17 1 chr4 68286789 68287900 -87342220 + Lx3C LINE L1 5515 6640 -336 4 138 5127 144 37 19 chr4 68287900 68288798 -87341322 + Lx2A1 LINE L1 6095 7008 0 4 1106 895 220 0 124 chr4 68288798 68288948 -87341172 + ORR1B1 LTR MaLR 204 352 -42 4 1106 5126 86 10 7 chr4 68288948 68289666 -87340454 + L1Md_F2 LINE L1 5863 6582 0 4 1106 895 220 0 124 chr4 68289666 68289733 -87340387 + ORR1B1 LTR MaLR 353 394 0 4 1106 280 287 103 85 chr4 68290769 68291100 -87339020 - L1MA6 LINE L1 -1 6299 5963 4 1106 612 73 0 0 chr4 68292771 68292853 -87337267 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1106 186 204 23 0 chr4 68293232 68293276 -87336844 + MIR SINE MIR 91 135 -127 4 1106 236 272 48 24 chr4 68293291 68293374 -87336746 - MER5A DNA MER1_type -21 168 84 4 1106 654 310 62 7 chr4 68293463 68293736 -87336384 - B4A SINE B4 -4 288 1 4 1106 404 350 44 64 chr4 68293831 68294081 -87336039 + MIRb SINE MIR 2 246 -22 4 1106 237 371 35 0 chr4 68295158 68295274 -87334846 - MIR SINE MIR -133 129 10 4 1106 220 186 116 0 chr4 68295401 68295444 -87334676 - L2b LINE L2 -8 3367 3320 4 1106 765 96 0 0 chr4 68296193 68296318 -87333802 + (GA)n Simple_repeat Simple_repeat 1 125 0 4 1106 1164 126 33 0 chr4 68296470 68296652 -87333468 - B2_Mm2 SINE B2 -7 188 1 4 1106 3671 189 22 23 chr4 68296677 68297649 -87332471 + L1VL4 LINE L1 78 1047 -2512 4 1106 3059 73 38 2 chr4 68297637 68298062 -87332058 + L1_Mus2 LINE L1 5751 6190 -376 4 1106 15587 143 3 35 chr4 68298033 68298526 -87331594 + L1_Mus3 LINE L1 3193 3594 -2289 4 1106 1099 101 0 0 chr4 68298526 68298674 -87331446 - B1_Mus1 SINE Alu 0 148 1 4 1106 15587 122 13 24 chr4 68298674 68301680 -87328440 + L1_Mus3 LINE L1 3595 6632 -6 4 1106 22 0 0 0 chr4 68302995 68303017 -87327103 + AT_rich Low_complexity Low_complexity 1 22 0 4 1106 897 332 39 49 chr4 68303585 68303974 -87326146 - MT2A LTR ERVL -85 448 64 4 1106 273 311 6 86 chr4 68303918 68304080 -87326040 - MTC LTR MaLR -272 149 1 4 1106 2141 179 64 25 chr4 68305171 68305607 -87324513 - RMER1B Other Other -24 1042 590 4 1106 955 157 76 126 chr4 68305607 68305660 -87324460 + RMER19C LTR ERVK 1 54 -557 4 1106 274 33 83 0 chr4 68305660 68305720 -87324400 + (TTG)n Simple_repeat Simple_repeat 2 66 0 4 1106 955 159 76 126 chr4 68305720 68305931 -87324189 + RMER19C LTR ERVK 55 249 -362 4 1106 1480 175 81 0 chr4 68305931 68306263 -87323857 - RLTR15 LTR ERVK 0 359 1 4 1106 507 286 27 113 chr4 68306263 68306289 -87323831 + RMER19C LTR ERVK 240 266 -471 4 1106 833 255 25 134 chr4 68306289 68306795 -87323325 - RMER1B Other Other -498 568 4 4 1106 472 354 83 9 chr4 68307054 68307282 -87322838 + MIRb SINE MIR 23 267 -1 4 1106 182 281 52 17 chr4 68307445 68307503 -87322617 + MIR SINE MIR 66 125 -83 4 1106 1202 186 9 14 chr4 68307535 68307758 -87322362 + URR1B DNA MER1_type 4 225 0 4 1106 198 0 0 0 chr4 68308190 68308212 -87321908 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4 1106 459 0 0 0 chr4 68308790 68308841 -87321279 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 4 1106 1098 270 12 114 chr4 68308842 68309264 -87320856 + MTE2a LTR MaLR 1 379 0 4 1106 351 177 0 0 chr4 68310092 68310188 -87319932 + (TATATG)n Simple_repeat Simple_repeat 4 99 0 4 1106 888 208 11 0 chr4 68310199 68310382 -87319738 + RLTR28 LTR ERVL 336 520 -4 4 1106 288 347 71 14 chr4 68311210 68311740 -87318380 - L1ME4a LINE L1 -12 1997 1850 4 1106 1093 209 5 14 chr4 68312459 68312682 -87317438 - URR1A DNA MER1_type -5 221 1 4 1106 333 320 13 0 chr4 68313133 68313211 -87316909 - ID4 SINE ID -2 81 3 4 1106 4472 75 25 8 chr4 68313251 68313858 -87316262 - L1Md_F2 LINE L1 0 6582 5966 4 1106 2753 116 20 0 chr4 68313858 68314299 -87315821 - L1_Mur1 LINE L1 -1165 4721 4272 4 1106 357 306 55 24 chr4 68314300 68314464 -87315656 - Lx8 LINE L1 -62 7411 7243 4 1106 784 315 189 16 chr4 68314492 68315138 -87314982 - Lx8 LINE L1 -323 7150 6393 4 1106 288 291 12 25 chr4 68315253 68315334 -87314786 - ID2 SINE ID -2 81 2 4 1106 21 0 0 0 chr4 68315469 68315490 -87314630 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 762 157 0 76 chr4 68315492 68315664 -87314456 - Lx2B LINE L1 -15 6985 6827 4 1106 409 351 23 18 chr4 68315678 68315849 -87314271 - Lx8 LINE L1 -1104 6369 6198 4 1106 520 211 0 13 chr4 68316012 68316161 -87313959 + (TA)n Simple_repeat Simple_repeat 1 147 0 4 1106 1521 207 54 3 chr4 68316326 68316680 -87313440 - RCHARR1 DNA MER1_type -110 864 493 4 1106 403 345 28 85 chr4 68317093 68317375 -87312745 - L1MEf LINE L1 -4770 2332 2067 4 1106 645 280 124 61 chr4 68317650 68317996 -87312124 + MTEb LTR MaLR 9 376 -3 4 1106 362 285 92 70 chr4 68318016 68318201 -87311919 - L1MEf LINE L1 -5783 1551 1363 4 1106 726 293 62 86 chr4 68318375 68318835 -87311285 + MT2B LTR ERVL 1 546 -55 4 1106 367 101 12 12 chr4 68318848 68318928 -87311192 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 4 1106 247 178 0 0 chr4 68318931 68318976 -87311144 + MT2B LTR ERVL 535 579 -5 4 1106 414 0 0 0 chr4 68320503 68320549 -87309571 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1106 402 21 0 0 chr4 68320550 68320597 -87309523 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1106 1028 8 8 0 chr4 68321466 68321587 -87308533 + (GA)n Simple_repeat Simple_repeat 1 122 0 4 1106 3512 71 13 4 chr4 68321627 68322093 -87308027 + L1Md_F2 LINE L1 6101 6570 -12 4 1106 507 95 0 12 chr4 68324119 68324204 -87305916 - Lx2A LINE L1 -1 7007 6924 4 1106 237 150 200 0 chr4 68324205 68324265 -87305855 - Lx2A LINE L1 -40 6968 6897 4 1106 596 284 0 7 chr4 68325044 68325186 -87304934 + B1_Mur1 SINE Alu 2 142 -7 4 1106 207 0 0 0 chr4 68326092 68326115 -87304005 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 4 1106 999 318 92 35 chr4 68327532 68328053 -87302067 + Lx8 LINE L1 6923 7473 0 4 1106 33556 9 2 4 chr4 68328933 68334527 -87295593 + L1Md_A LINE L1 21 5586 -297 4 1106 9024 4 0 0 chr4 68334527 68335552 -87294568 + L1Md_A LINE L1 5587 6582 0 4 1106 1726 28 0 0 chr4 68335564 68335781 -87294339 + L1_Mm LINE L1 2639 2855 -3028 4 1106 398 0 0 0 chr4 68335781 68335835 -87294285 + L1Md_T LINE L1 6529 6582 0 4 1106 226 235 147 0 chr4 68336833 68336901 -87293219 + B3 SINE B2 139 216 0 4 1106 339 381 0 0 chr4 68336910 68337015 -87293105 - PB1D10 SINE Alu -7 110 6 4 1106 773 290 7 122 chr4 68337064 68337492 -87292628 + Lx6 LINE L1 7027 7405 -55 4 1106 357 361 6 0 chr4 68337716 68337882 -87292238 + Lx6 LINE L1 249 415 -7313 4 1106 795 236 22 12 chr4 68338005 68338284 -87291836 + Lx6 LINE L1 860 1118 -6610 4 1106 392 234 52 14 chr4 68338313 68338453 -87291667 + Lx6 LINE L1 1685 1823 -4057 4 1106 4573 165 53 13 chr4 68338451 68339447 -87290673 + L1_Mur1 LINE L1 2774 3809 -2077 4 1106 2883 215 9 89 chr4 68339447 68340145 -87289975 + RLTR26 LTR ERVK 1 642 0 4 1106 7535 194 20 104 chr4 68340184 68340976 -87289144 + L1_Mur1 LINE L1 3836 4633 -1253 4 1106 2247 72 13 7 chr4 68340976 68341284 -87288836 + L1_Mus1 LINE L1 6258 6567 0 4 1106 7535 194 20 104 chr4 68341284 68341895 -87288225 + L1_Mur1 LINE L1 4634 5246 -640 4 1106 288 135 0 37 chr4 68341895 68341949 -87288171 - BGLII LTR ERVK 0 421 370 4 1106 920 126 0 14 chr4 68341941 68342086 -87288034 - BGLII LTR ERVK -278 143 1 4 1106 7535 194 20 104 chr4 68342086 68342660 -87287460 + L1_Mur1 LINE L1 5247 5823 -63 4 1106 5930 84 7 17 chr4 68342660 68343528 -87286592 + RLTR22_Mus LTR ERVK 1 859 -949 4 1106 393 302 43 82 chr4 68343770 68344001 -87286119 + RMER12 LTR ERVK 1101 1322 0 4 1106 3324 130 13 2 chr4 68344001 68344541 -87285579 + Lx LINE L1 5815 6360 -294 4 1106 602 154 0 78 chr4 68344547 68344688 -87285432 + Lx LINE L1 6517 6646 -8 4 1106 229 161 32 0 chr4 68344716 68344778 -87285342 + Lx6 LINE L1 3230 3293 -2587 4 1106 573 167 28 7 chr4 68344781 68344926 -87285194 + Lx6 LINE L1 3257 3404 -2476 4 1106 394 219 10 0 chr4 68344926 68345022 -87285098 + Lx4B LINE L1 6704 6800 -258 4 1106 579 283 31 31 chr4 68345057 68345316 -87284804 + Lx4B LINE L1 6799 7057 -1 4 1106 11848 66 5 0 chr4 68345327 68346953 -87283167 + L1Md_F2 LINE L1 3952 5585 -298 4 1106 7522 64 3 17 chr4 68346954 68347952 -87282168 + L1Md_F2 LINE L1 5587 6570 -12 4 1106 21 0 0 0 chr4 68347981 68348002 -87282118 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 3144 225 51 11 chr4 68348002 68348927 -87281193 + Lx6 LINE L1 3489 4452 -1428 4 1106 1136 75 0 0 chr4 68348927 68349073 -87281047 + B1_Mus2 SINE Alu 2 147 0 4 1106 1062 199 12 40 chr4 68349077 68349386 -87280734 + Lx6 LINE L1 5214 5526 -354 4 1106 1930 208 100 57 chr4 68349400 68350016 -87280104 - RMER6C LTR ERVK -11 679 1 4 1106 4505 275 130 15 chr4 68350016 68351740 -87278380 + Lx6 LINE L1 5520 7442 -18 4 1106 840 258 137 15 chr4 68351894 68352317 -87277803 - Lx6 LINE L1 -685 7011 6523 4 1106 701 294 13 67 chr4 68352313 68352612 -87277508 - Lx6 LINE L1 -1215 6245 5963 4 1106 39 38 0 0 chr4 68352689 68352742 -87277378 + AT_rich Low_complexity Low_complexity 1 53 0 4 1106 234 0 0 0 chr4 68352802 68352828 -87277292 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1106 604 299 84 34 chr4 68352832 68353154 -87276966 - Lx9 LINE L1 -185 7459 7122 4 1106 5763 152 1 21 chr4 68353182 68354191 -87275929 - Lx LINE L1 -2 6652 5664 4 1106 522 0 0 0 chr4 68354815 68354873 -87275247 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1106 247 344 0 0 chr4 68354887 68354948 -87275172 + Tigger7 DNA MER2_type 2429 2489 -2 5 1106 389 20 0 20 chr4 68357421 68357472 -87272648 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1106 1018 343 89 12 chr4 68357598 68358271 -87271849 + Lx8 LINE L1 6393 7117 -356 5 1106 1521 282 14 22 chr4 68358340 68358452 -87271668 + MTD LTR MaLR 1 116 -303 5 1106 7148 5 0 0 chr4 68358452 68359239 -87270881 - L1Md_T LINE L1 0 6582 5796 5 1106 1521 282 14 22 chr4 68359239 68359542 -87270578 + MTD LTR MaLR 117 413 -6 5 1106 603 137 0 0 chr4 68359653 68359777 -87270343 + (TC)n Simple_repeat Simple_repeat 2 125 0 5 1106 432 0 0 0 chr4 68359780 68359828 -87270292 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1106 532 354 67 26 chr4 68360596 68360863 -87269257 - RMER15 LTR ERVL -6 569 292 5 1106 330 91 0 0 chr4 68360980 68361035 -87269085 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 5 1106 4515 190 40 1 chr4 68361037 68361879 -87268241 - Lx4A LINE L1 -9 7049 6175 5 1106 1874 143 36 3 chr4 68361899 68362208 -87267912 - ORR1A2 LTR MaLR -8 319 1 5 1106 786 171 200 0 chr4 68362298 68362473 -87267647 - L1_Mur2 LINE L1 -1 5876 5667 5 1106 9149 88 7 10 chr4 68362470 68364729 -87265391 + L1Md_F2 LINE L1 368 2573 -3310 5 1106 3906 67 17 4 chr4 68364728 68365270 -87264850 + L1Md_F2 LINE L1 5038 5586 -297 5 1106 8143 48 1 2 chr4 68365270 68366267 -87263853 + L1Md_F2 LINE L1 5587 6582 0 5 1106 1716 84 36 0 chr4 68366285 68366536 -87263584 - L1_Mur2 LINE L1 -722 5155 4896 5 1106 931 116 0 0 chr4 68366538 68366667 -87263453 + B1_Mus1 SINE Alu 19 147 -1 5 1106 13300 147 72 41 chr4 68366712 68368863 -87261257 - L1_Mur2 LINE L1 -1641 4236 2061 5 1106 453 19 0 0 chr4 68368863 68368917 -87261203 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1106 297 109 0 0 chr4 68368917 68368972 -87261148 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 5 1106 13300 148 64 43 chr4 68368972 68369857 -87260263 - L1_Mur2 LINE L1 -3817 2060 1108 5 1106 189 0 0 0 chr4 68369897 68369918 -87260202 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1106 33221 69 3 5 chr4 68369945 68375404 -87254716 - L1Md_F3 LINE L1 0 6584 1140 5 1106 4072 147 4 3 chr4 68375380 68376101 -87254019 - L1Md_F3 LINE L1 -5519 1205 484 5 1106 4611 142 8 24 chr4 68376101 68377030 -87253090 - L1Md_A LINE L1 -4512 1371 462 5 1106 320 87 101 0 chr4 68377033 68377102 -87253018 - L1_Mus3 LINE L1 -17 6621 6546 5 1106 2013 201 135 0 chr4 68377108 68377575 -87252545 - L1_Mur2 LINE L1 -5974 1112 583 5 1106 852 280 181 17 chr4 68377652 68378132 -87251988 - Lx8 LINE L1 -532 6941 6383 5 1106 291 71 0 0 chr4 68378677 68378719 -87251401 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1106 578 228 48 40 chr4 68378824 68379052 -87251068 - MER33 DNA MER1_type -48 276 47 5 1106 1688 94 0 15 chr4 68379092 68379351 -87250769 - L1Md_F2 LINE L1 -23 6559 6305 5 1106 1040 111 6 0 chr4 68380173 68380335 -87249785 + (GGAAA)n Simple_repeat Simple_repeat 3 165 0 5 1106 2155 87 16 3 chr4 68380513 68380823 -87249297 - L1_Mus3 LINE L1 0 6638 6325 5 1106 845 326 45 66 chr4 68382096 68382550 -87247570 - MT2A LTR ERVL -3 598 75 5 1106 295 164 452 0 chr4 68382552 68382656 -87247464 + Lx2 LINE L1 6697 6847 -150 5 1106 299 224 0 0 chr4 68382643 68382710 -87247410 - L1_Mur2 LINE L1 -815 5062 4996 5 1106 1165 201 52 32 chr4 68382713 68382892 -87247228 + RMER1C Other Other 1029 1209 -133 5 1106 278 20 78 0 chr4 68382892 68382943 -87247177 + (TTG)n Simple_repeat Simple_repeat 2 56 0 5 1106 1165 201 52 32 chr4 68382943 68383071 -87247049 + RMER1C Other Other 1210 1342 0 5 1106 245 151 0 19 chr4 68383071 68383125 -87246995 + A-rich Low_complexity Low_complexity 5 57 0 5 1106 269 309 48 0 chr4 68383129 68383213 -87246907 - MTE2b LTR MaLR -291 88 1 5 1106 425 246 18 0 chr4 68383565 68383675 -87246445 + Lx7 LINE L1 6819 6930 -766 5 1106 3344 117 18 0 chr4 68383676 68384180 -87245940 - MT2B2 LTR ERVL -71 513 1 5 1106 394 230 43 204 chr4 68384180 68384277 -87245843 - ORR1A3-int LTR MaLR -1388 575 532 5 1106 3448 175 65 1 chr4 68384277 68384987 -87245133 - MERVL_2A-int LTR ERVL -116 5645 4891 5 1106 230 281 90 0 chr4 68385002 68385091 -87245029 + Lx7 LINE L1 7205 7301 -395 5 1106 258 239 17 42 chr4 68385099 68385136 -87244984 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 1106 252 0 0 0 chr4 68385136 68385164 -87244956 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1106 258 239 17 42 chr4 68385164 68385244 -87244876 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 5 1106 204 111 0 0 chr4 68386501 68386537 -87243583 + (TTTTTA)n Simple_repeat Simple_repeat 4 39 0 5 1106 233 224 49 49 chr4 68386537 68386598 -87243522 - PB1 SINE Alu 0 127 67 5 1106 7423 225 23 9 chr4 68387108 68387570 -87242550 + Lx6 LINE L1 3801 4263 -1614 5 1106 792 26 8 34 chr4 68387570 68387687 -87242433 + (TCTCCC)n Simple_repeat Simple_repeat 5 118 0 5 1106 7423 225 23 9 chr4 68387687 68389159 -87240961 + Lx6 LINE L1 4264 5763 -114 5 1106 427 308 122 97 chr4 68389160 68389660 -87240460 - RMER20B LTR ERVK 0 516 3 5 1106 921 283 45 51 chr4 68389662 68390202 -87239918 + Lx6 LINE L1 5765 6363 -687 5 1106 1461 292 39 28 chr4 68390235 68390782 -87239338 + Lx6 LINE L1 6506 7434 -26 5 1106 282 224 0 0 chr4 68390946 68391031 -87239089 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1106 202 234 31 15 chr4 68391872 68391937 -87238183 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 5 1106 232 335 43 27 chr4 68392029 68392213 -87237907 - L1MA5A LINE L1 -18 6279 6093 5 1106 25 31 0 0 chr4 68393258 68393290 -87236830 + AT_rich Low_complexity Low_complexity 1 32 0 5 1106 27 103 0 0 chr4 68393511 68393608 -87236512 + AT_rich Low_complexity Low_complexity 1 97 0 5 1106 3313 143 25 3 chr4 68393619 68394384 -87235736 - Lx2 LINE L1 -972 6025 5244 5 1106 1902 295 40 30 chr4 68394381 68394978 -87235142 - Lx6 LINE L1 -149 7311 6709 5 1106 260 267 147 10 chr4 68395167 68395269 -87234851 + PB1D9 SINE Alu 4 119 -1 5 1106 21 89 0 0 chr4 68395383 68395439 -87234681 + AT_rich Low_complexity Low_complexity 1 56 0 5 1106 372 354 76 6 chr4 68395580 68395896 -87234224 - L1M5 LINE L1 -2928 3218 2881 5 1106 231 175 0 0 chr4 68396023 68396080 -87234040 + GA-rich Low_complexity Low_complexity 1 57 0 5 1106 402 21 0 0 chr4 68396752 68396799 -87233321 + (CACAT)n Simple_repeat Simple_repeat 3 49 0 5 1106 373 306 9 94 chr4 68397042 68397266 -87232854 - HAL1b LINE L1 -719 1290 1086 5 1106 389 326 0 0 chr4 68397284 68397373 -87232747 + PB1D10 SINE Alu 1 89 -28 5 1106 226 413 80 0 chr4 68397373 68397422 -87232698 + B4A SINE B4 86 234 -58 5 1106 23 0 0 0 chr4 68397574 68397597 -87232523 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 1253 330 41 19 chr4 68397901 68398435 -87231685 - Lx8 LINE L1 -594 6879 6334 5 1106 237 65 0 0 chr4 68399312 68399343 -87230777 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1106 221 167 24 0 chr4 68399512 68399554 -87230566 + (CAA)n Simple_repeat Simple_repeat 2 44 0 5 1106 800 298 80 8 chr4 68399976 68400338 -87229782 + L1MC2 LINE L1 5457 5844 -500 5 1106 277 336 48 41 chr4 68400675 68400821 -87229299 + MLT1J2 LTR MaLR 279 425 -23 5 1106 184 114 68 0 chr4 68400979 68401023 -87229097 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 5 1106 526 318 62 5 chr4 68401103 68401296 -87228824 - B3 SINE B2 -12 204 1 5 1106 1753 147 15 16 chr4 68401942 68402296 -87227824 + ORR1A2 LTR MaLR 1 329 -65 5 1106 351 0 0 0 chr4 68402298 68402337 -87227783 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1106 239 291 80 18 chr4 68403362 68403474 -87226646 - MamRep434 DNA TcMar -281 145 27 5 1106 5569 111 56 0 chr4 68403756 68404597 -87225523 + Lx LINE L1 5761 6648 -6 5 1106 21 0 0 0 chr4 68405728 68405749 -87224371 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 365 250 58 36 chr4 68405756 68405893 -87224227 - Lx5 LINE L1 -3 7047 6908 5 1106 641 395 71 59 chr4 68406082 68406661 -87223459 - MER77 LTR ERVL 0 607 22 5 1106 252 0 0 0 chr4 68407952 68407980 -87222140 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1106 591 404 27 11 chr4 68408023 68408286 -87221834 - B4A SINE B4 -7 285 19 5 1106 377 355 114 5 chr4 68408808 68408992 -87221128 - MLT1B LTR MaLR -7 383 180 5 1106 1123 45 0 0 chr4 68409056 68409189 -87220931 + B1_Mus2 SINE Alu 2 134 -13 5 1106 446 0 19 0 chr4 68409189 68409243 -87220877 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1106 841 291 138 36 chr4 68409293 68409656 -87220464 - MTD LTR MaLR 0 419 20 5 1106 22 0 0 0 chr4 68409656 68409678 -87220442 + AT_rich Low_complexity Low_complexity 1 22 0 5 1106 328 379 26 48 chr4 68409689 68409919 -87220201 + B4A SINE B4 64 288 -4 5 1106 1316 212 34 14 chr4 68410521 68410817 -87219303 + Lx5 LINE L1 6747 7048 -2 5 1106 202 227 0 0 chr4 68411295 68411339 -87218781 + A-rich Low_complexity Low_complexity 1 44 0 5 1106 577 320 0 7 chr4 68411454 68411608 -87218512 + ORR1E LTR MaLR 8 160 -199 5 1106 878 323 185 12 chr4 68411609 68412294 -87217826 + Lx8 LINE L1 6477 7279 -194 5 1106 357 264 91 3 chr4 68412479 68412612 -87217508 + ORR1E LTR MaLR 219 379 0 5 1106 213 65 0 0 chr4 68413782 68413813 -87216307 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1106 3818 250 69 9 chr4 68413843 68414796 -87215324 - Lx5 LINE L1 -56 6994 5985 5 1106 209 324 111 28 chr4 68415165 68415273 -87214847 + MIR SINE MIR 102 218 -44 5 1106 341 355 16 31 chr4 68415437 68415565 -87214555 - RSINE1 SINE B4 -6 159 34 5 1106 569 360 102 14 chr4 68416591 68416935 -87213185 + MLT1A0 LTR MaLR 1 374 0 5 1106 296 312 147 18 chr4 68417107 68417270 -87212850 - MIRc SINE MIR -69 199 16 5 1106 22 0 0 0 chr4 68418075 68418097 -87212023 + AT_rich Low_complexity Low_complexity 1 22 0 5 1106 866 10 10 0 chr4 68418487 68418590 -87211530 + (GAA)n Simple_repeat Simple_repeat 1 104 0 5 1107 1068 110 0 0 chr4 68420550 68420696 -87209424 - B1_Mus1 SINE Alu -2 146 1 5 1107 482 163 0 10 chr4 68420850 68420949 -87209171 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1107 306 0 0 0 chr4 68421848 68421882 -87208238 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1107 216 200 0 0 chr4 68422911 68422966 -87207154 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1107 210 118 0 0 chr4 68422963 68422997 -87207123 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 6 1107 752 318 0 0 chr4 68424297 68424470 -87205650 + B4 SINE B4 22 194 -98 6 1107 557 52 13 0 chr4 68424778 68424855 -87205265 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 6 1107 180 161 0 31 chr4 68425532 68425564 -87204556 + MIRb SINE MIR 160 190 -78 6 1107 256 356 54 8 chr4 68426111 68426241 -87203879 + MIRb SINE MIR 105 240 -28 6 1107 243 285 98 23 chr4 68426565 68426698 -87203422 + L2c LINE L2 3244 3386 -1 6 1107 450 114 0 0 chr4 68427810 68427889 -87202231 + (GA)n Simple_repeat Simple_repeat 1 79 0 6 1107 222 281 0 30 chr4 68428823 68428889 -87201231 + GA-rich Low_complexity Low_complexity 1 64 0 6 1107 247 271 50 72 chr4 68429133 68429272 -87200848 - MIRb SINE MIR -69 199 64 6 1107 206 305 0 0 chr4 68429993 68430052 -87200068 + (TATG)n Simple_repeat Simple_repeat 1 59 0 6 1107 495 78 0 0 chr4 68430072 68430149 -87199971 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1107 462 49 0 0 chr4 68431110 68431171 -87198949 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1107 607 332 146 24 chr4 68431202 68431449 -87198671 - B4 SINE B4 -14 278 2 6 1107 235 252 77 48 chr4 68431450 68431556 -87198564 + MIRb SINE MIR 119 222 -40 6 1107 275 392 8 0 chr4 68431804 68431924 -87198196 + MIRb SINE MIR 89 209 -59 6 1107 264 122 0 0 chr4 68432295 68432336 -87197784 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1107 366 326 102 27 chr4 68432412 68432598 -87197522 + MLT1A0 LTR MaLR 3 202 -163 6 1107 312 286 112 0 chr4 68432633 68432731 -87197389 + MLT1A0 LTR MaLR 257 365 0 6 1107 389 315 63 90 chr4 68432733 68433115 -87197005 + L1M5 LINE L1 5268 5646 -527 6 1107 459 35 0 0 chr4 68433115 68433172 -87196948 + (CAA)n Simple_repeat Simple_repeat 3 59 0 6 1107 389 315 63 90 chr4 68433172 68433201 -87196919 + L1M5 LINE L1 5647 5668 -505 6 1107 404 316 158 0 chr4 68433399 68433538 -87196582 + RSINE1 SINE B4 3 163 -2 6 1107 206 330 0 0 chr4 68433706 68433800 -87196320 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 1107 288 53 0 0 chr4 68434000 68434038 -87196082 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1107 240 35 0 0 chr4 68434038 68434067 -87196053 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1107 197 286 42 42 chr4 68434383 68434478 -87195642 - MIR SINE MIR -64 144 50 6 1107 414 85 0 0 chr4 68435151 68435210 -87194910 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1107 434 0 0 51 chr4 68435246 68435305 -87194815 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 6 1107 246 325 36 0 chr4 68435389 68435472 -87194648 - MIRc SINE MIR -128 140 55 6 1107 753 281 39 26 chr4 68435473 68435732 -87194388 + ERVL-B4-int LTR ERVL 1739 2032 -3682 6 1107 350 377 37 19 chr4 68436440 68436656 -87193464 + MLT1H1 LTR MaLR 336 555 0 6 1107 323 159 0 60 chr4 68436801 68436868 -87193252 + HAL1-3A_ME LINE L1 1950 2012 -846 6 1107 218 108 0 75 chr4 68436869 68436897 -87193223 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 6 1107 288 53 0 0 chr4 68436897 68436935 -87193185 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1107 218 108 0 75 chr4 68436935 68436946 -87193174 + (CATATA)n Simple_repeat Simple_repeat 3 12 0 6 1107 289 368 115 42 chr4 68437115 68437376 -87192744 + MLT1E2 LTR MaLR 348 627 0 6 1107 962 83 69 0 chr4 68438509 68438653 -87191467 - L1_Mus2 LINE L1 -5 6561 6408 6 1107 184 295 247 11 chr4 68438678 68438767 -87191353 + MER5A DNA MER1_type 28 137 -52 6 1107 180 0 0 0 chr4 68439086 68439106 -87191014 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1107 313 276 60 75 chr4 68439422 68439508 -87190612 - L2a LINE L2 -1 3425 3339 6 1107 180 0 0 0 chr4 68439508 68439528 -87190592 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1107 313 309 41 70 chr4 68439528 68439600 -87190520 - L2a LINE L2 -88 3338 3219 6 1107 704 316 72 14 chr4 68439697 68439973 -87190147 + B4A SINE B4 1 292 0 6 1107 183 156 0 0 chr4 68439989 68440021 -87190099 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1107 318 314 92 10 chr4 68440038 68440234 -87189886 + Lx8 LINE L1 7227 7438 -35 6 1107 813 202 26 52 chr4 68441277 68441507 -87188613 + URR1A DNA MER1_type 1 224 -2 6 1107 288 315 27 9 chr4 68441610 68441722 -87188398 - MIRb SINE MIR -92 176 63 6 1107 31 68 0 0 chr4 68442318 68442377 -87187743 + AT_rich Low_complexity Low_complexity 1 59 0 6 1107 297 288 34 8 chr4 68442377 68442496 -87187624 + CT-rich Low_complexity Low_complexity 5 126 0 6 1107 192 363 31 8 chr4 68442598 68442725 -87187395 + MIR SINE MIR 30 157 -105 6 1107 848 10 10 0 chr4 68443137 68443238 -87186882 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 1107 229 346 46 18 chr4 68443387 68443496 -87186624 - L2 LINE L2 -626 2793 2682 6 1107 2902 67 0 3 chr4 68444116 68444488 -87185632 - L1_Mus2 LINE L1 -1 6565 6195 6 1107 2086 234 85 6 chr4 68444943 68445666 -87184454 + Lx6 LINE L1 5486 6264 -1196 6 1107 264 104 41 20 chr4 68445666 68445715 -87184405 + Lx6 LINE L1 6518 6567 -893 6 1107 510 170 0 0 chr4 68445864 68446011 -87184109 + (CA)n Simple_repeat Simple_repeat 1 147 0 6 1107 2692 74 0 3 chr4 68446772 68447125 -87182995 - L1_Mus2 LINE L1 -4 6562 6211 6 1107 208 342 68 0 chr4 68447148 68447221 -87182899 - MIR SINE MIR -168 94 17 6 1107 492 351 142 10 chr4 68447405 68447906 -87182214 + Lx8 LINE L1 6497 7063 -410 6 1107 744 325 33 5 chr4 68448687 68448900 -87181220 + MLT1G3 LTR MaLR 167 385 -210 6 1107 361 327 57 13 chr4 68449165 68449323 -87180797 + MIR SINE MIR 86 250 -12 6 1107 737 193 87 0 chr4 68450547 68450697 -87179423 + URR1A DNA MER1_type 64 226 0 6 1107 906 270 116 28 chr4 68450705 68451059 -87179061 + MLT1B LTR MaLR 1 385 -5 6 1107 277 316 13 0 chr4 68451839 68451915 -87178205 - MER20 DNA MER1_type -142 77 1 6 1107 711 35 0 0 chr4 68451995 68452081 -87178039 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1107 631 144 48 8 chr4 68453117 68453243 -87176877 + Lx LINE L1 6523 6653 -1 6 1107 322 316 82 8 chr4 68453459 68453593 -87176527 - MER2 DNA MER2_type -195 150 7 6 1107 1010 208 5 9 chr4 68454178 68454437 -87175683 + Lx9 LINE L1 5637 5927 -1717 6 1107 1271 277 42 2 chr4 68454431 68454837 -87175283 + Lx9 LINE L1 6960 7381 -263 6 1107 515 266 133 61 chr4 68455065 68455426 -87174694 - MER113 DNA MER1_type -80 441 55 6 1107 277 368 56 43 chr4 68455533 68455695 -87174425 - MIR3 SINE MIR -25 183 20 6 1107 5276 211 53 8 chr4 68455767 68456960 -87173160 + Lx5 LINE L1 5805 7050 0 6 1107 278 286 182 27 chr4 68457112 68457299 -87172821 - MIR SINE MIR -46 216 1 6 1107 188 404 9 0 chr4 68459121 68459230 -87170890 + MIR3 SINE MIR 87 196 -12 6 1107 205 362 7 14 chr4 68459277 68459417 -87170703 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 6 1107 464 270 7 68 chr4 68460399 68460546 -87169574 - B1_Mur2 SINE Alu -7 142 5 6 1107 225 0 0 0 chr4 68461925 68461950 -87168170 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1107 468 348 96 22 chr4 68461987 68462122 -87167998 - RSINE1 SINE B4 -6 159 15 6 1107 599 187 12 89 chr4 68462139 68462156 -87167964 - ID_B1 SINE B4 0 224 183 6 1107 1016 39 0 0 chr4 68462156 68462284 -87167836 - B1_Mus1 SINE Alu -11 137 10 6 1107 599 187 12 89 chr4 68462284 68462327 -87167793 - ID_B1 SINE B4 0 182 65 6 1107 378 0 0 0 chr4 68463500 68463542 -87166578 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1107 333 68 0 0 chr4 68464122 68464166 -87165954 + (CTTAT)n Simple_repeat Simple_repeat 4 47 0 6 1107 955 99 12 6 chr4 68464709 68464872 -87165248 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 6 1107 294 303 90 10 chr4 68464936 68465036 -87165084 + MLT1A LTR MaLR 1 108 -266 6 1107 1083 139 0 0 chr4 68465056 68465236 -87164884 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1107 340 306 104 104 chr4 68466547 68466711 -87163409 - B3A SINE B2 -5 193 29 6 1107 2471 82 76 0 chr4 68466711 68466783 -87163337 - L1_Mus3 LINE L1 -4 6634 6563 6 1107 186 43 0 0 chr4 68466783 68466806 -87163314 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 6 1107 2471 82 76 0 chr4 68466806 68467088 -87163032 - L1_Mus3 LINE L1 -76 6562 6254 6 1107 340 306 104 104 chr4 68467088 68467116 -87163004 - B3A SINE B2 -170 28 1 6 1107 200 86 0 28 chr4 68468152 68468188 -87161932 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1107 225 301 12 24 chr4 68468564 68468649 -87161471 + MLT1A LTR MaLR 365 448 0 6 1107 225 0 0 0 chr4 68470133 68470158 -87159962 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1107 408 82 0 0 chr4 68470492 68470553 -87159567 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1107 304 324 81 8 chr4 68471261 68471519 -87158601 + L1MB5 LINE L1 5609 5885 -289 6 1107 627 73 0 0 chr4 68471536 68471618 -87158502 + L1Md_F2 LINE L1 5503 5584 -299 6 1107 7914 60 1 1 chr4 68471620 68472614 -87157506 + L1Md_F2 LINE L1 5587 6580 -2 6 1107 283 331 35 0 chr4 68472685 68472830 -87157290 + L1MB5 LINE L1 5981 6130 -50 6 1107 1083 114 102 0 chr4 68472851 68473027 -87157093 - B2_Mm2 SINE B2 0 195 2 6 1107 24 0 0 0 chr4 68473115 68473139 -87156981 + AT_rich Low_complexity Low_complexity 1 24 0 6 1107 291 210 95 16 chr4 68473238 68473301 -87156819 + B3 SINE B2 69 136 -80 6 1107 306 0 0 0 chr4 68473345 68473379 -87156741 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1107 423 38 0 0 chr4 68473421 68473474 -87156646 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1107 6343 126 46 50 chr4 68473492 68475094 -87155026 - L1_Mus2 LINE L1 -2 6564 4969 6 1107 2600 120 5 14 chr4 68475094 68475507 -87154613 + RLTR9E LTR ERVK 1 409 0 6 1107 6343 140 4 9 chr4 68475507 68475667 -87154453 - L1_Mus2 LINE L1 -915 4968 4810 6 1107 3401 68 24 17 chr4 68475841 68476306 -87153814 - L1Md_F2 LINE L1 -1 6581 6114 6 1107 204 40 0 0 chr4 68476647 68476672 -87153448 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 1107 432 172 43 82 chr4 68476672 68476856 -87153264 - RMER17C LTR ERVK -139 271 95 6 1107 381 22 0 0 chr4 68477976 68478022 -87152098 + (TCC)n Simple_repeat Simple_repeat 2 47 0 6 1107 810 253 128 84 chr4 68478135 68478493 -87151627 + ORR1D1 LTR MaLR 1 374 0 7 1107 1499 252 15 3 chr4 68478493 68478824 -87151296 + ORR1D1-int LTR MaLR 1 335 -1035 7 1107 215 325 62 0 chr4 68479088 68479168 -87150952 - L2a LINE L2 -4 3422 3338 7 1107 285 338 162 4 chr4 68479569 68479798 -87150322 + Lx8 LINE L1 6129 6393 -1080 7 1107 187 317 36 12 chr4 68480127 68480210 -87149910 - L2a LINE L2 -558 2861 2777 7 1107 442 276 31 0 chr4 68480371 68480498 -87149622 - MER104 DNA Tc2 -3 178 48 7 1107 269 376 32 0 chr4 68480650 68480839 -87149281 + L2 LINE L2 1635 1829 -1590 7 1107 284 48 24 0 chr4 68481505 68481547 -87148573 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1107 608 353 9 33 chr4 68481552 68481766 -87148354 - B4 SINE B4 -79 213 5 7 1107 800 303 79 63 chr4 68483641 68484531 -87145589 - L1ME3A LINE L1 -16 6157 5254 7 1107 752 198 25 0 chr4 68485653 68485815 -87144305 + Lx5 LINE L1 6271 6436 -614 7 1107 210 355 0 13 chr4 68488689 68488766 -87141354 - B4A SINE B4 -208 84 9 7 1107 1437 39 0 0 chr4 68488783 68488963 -87141157 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 1107 399 292 76 6 chr4 68489814 68489986 -87140134 - MER3 DNA MER1_type -25 184 1 7 1107 735 12 0 0 chr4 68491017 68491101 -87139019 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1107 374 138 0 0 chr4 68491151 68491209 -87138911 - L1_Mm LINE L1 -279 5604 5547 7 1107 378 59 0 0 chr4 68491207 68491258 -87138862 + Lx LINE L1 5629 5679 -975 7 1107 6700 88 0 10 chr4 68491823 68492794 -87137326 + L1_Mus4 LINE L1 5676 6636 0 7 1107 212 215 0 60 chr4 68493393 68493477 -87136643 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 7 1107 24 0 0 0 chr4 68493570 68493594 -87136526 + AT_rich Low_complexity Low_complexity 1 24 0 7 1107 4550 64 0 0 chr4 68493656 68494266 -87135854 + L1Md_F2 LINE L1 4976 5585 -298 7 1107 7725 55 3 17 chr4 68494267 68495265 -87134855 + L1Md_F2 LINE L1 5587 6570 -12 7 1107 215 301 0 0 chr4 68495340 68495413 -87134707 + A-rich Low_complexity Low_complexity 1 73 0 7 1107 31 0 0 0 chr4 68495598 68495629 -87134491 + AT_rich Low_complexity Low_complexity 1 31 0 7 1107 196 222 104 65 chr4 68495893 68495970 -87134150 - L4 LINE RTE -1335 694 615 7 1107 1139 70 0 0 chr4 68496329 68496463 -87133657 + B1_Mus2 SINE Alu 2 135 -12 7 1107 681 13 0 0 chr4 68496463 68496541 -87133579 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1107 288 248 10 19 chr4 68496600 68496703 -87133417 + Charlie5 DNA MER1_type 2472 2573 -51 7 1107 276 314 14 0 chr4 68496746 68496816 -87133304 + ID SINE ID 2 72 -152 7 1107 362 69 17 0 chr4 68497231 68497289 -87132831 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 7 1107 1023 88 7 0 chr4 68497289 68497425 -87132695 - B1_Mus1 SINE Alu -11 137 1 7 1107 264 312 13 0 chr4 68498350 68498427 -87131693 + (TGGA)n Simple_repeat Simple_repeat 3 80 0 7 1107 275 347 29 39 chr4 68499564 68499666 -87130454 - LTR85a LTR Gypsy? -556 146 46 7 1107 200 328 0 17 chr4 68500738 68500797 -87129323 + MIRc SINE MIR 42 99 -169 1 1107 714 299 24 24 chr4 68501006 68501212 -87128908 + B4A SINE B4 1 206 -86 2 1107 291 157 0 0 chr4 68502555 68502606 -87127514 + (TTA)n Simple_repeat Simple_repeat 1 51 0 3 1107 422 318 32 0 chr4 68502607 68502733 -87127387 - B1F1 SINE Alu -3 146 17 4 1107 607 303 46 82 chr4 68505620 68505839 -87124281 + B3A SINE B2 1 211 -5 5 1107 452 135 48 9 chr4 68505848 68505953 -87124167 + GA-rich Low_complexity Low_complexity 4 112 0 6 1107 297 0 0 0 chr4 68506473 68506506 -87123614 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1107 239 316 117 45 chr4 68507165 68507354 -87122766 - L2a LINE L2 -309 3117 2915 8 1107 207 139 0 0 chr4 68507402 68507438 -87122682 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1107 231 311 33 0 chr4 68507444 68507505 -87122615 - ID4_ SINE ID -19 64 2 1 1107 324 300 22 0 chr4 68507643 68507733 -87122387 - MER58B DNA MER1_type -77 264 173 1 1107 183 129 0 0 chr4 68508471 68508502 -87121618 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1107 910 251 35 15 chr4 68509115 68509313 -87120807 + B3 SINE B2 15 216 0 1 1107 405 0 0 0 chr4 68509769 68509814 -87120306 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1107 557 344 0 12 chr4 68509875 68510040 -87120080 + B4A SINE B4 112 274 -18 1 1107 193 364 27 18 chr4 68510466 68510578 -87119542 - L4 LINE RTE -481 1548 1436 1 1107 486 340 0 0 chr4 68511279 68511435 -87118685 - RSINE1 SINE B4 -6 159 4 1 1107 394 329 222 9 chr4 68512363 68512592 -87117528 + B4A SINE B4 11 287 -5 1 1107 276 186 0 0 chr4 68512649 68512708 -87117412 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1107 280 368 140 30 chr4 68512768 68513003 -87117117 + MIRb SINE MIR 7 267 -1 2 1107 23 0 0 0 chr4 68513113 68513136 -87116984 + AT_rich Low_complexity Low_complexity 1 23 0 2 1107 249 338 50 48 chr4 68513812 68513954 -87116166 + MER58A DNA MER1_type 12 154 -70 2 1107 504 0 0 0 chr4 68513954 68514010 -87116110 + (CTA)n Simple_repeat Simple_repeat 1 56 0 2 1107 249 320 50 50 chr4 68514010 68514069 -87116051 + MER58A DNA MER1_type 155 214 -10 2 1107 288 53 0 0 chr4 68514271 68514309 -87115811 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1107 4868 159 47 22 chr4 68514335 68514811 -87115309 + RLTR25A LTR ERVK 1 503 -600 2 1107 261 0 0 0 chr4 68514811 68514840 -87115280 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1107 4868 168 53 32 chr4 68514840 68515388 -87114732 + RLTR25A LTR ERVK 450 1028 0 2 1107 207 170 0 0 chr4 68516589 68516636 -87113484 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1107 189 0 0 0 chr4 68516738 68516759 -87113361 + (ATG)n Simple_repeat Simple_repeat 1 21 0 2 1107 612 0 0 0 chr4 68517815 68517883 -87112237 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 2 1107 6599 136 8 7 chr4 68518451 68519516 -87110604 + ORR1A2-int LTR MaLR 898 1963 0 3 1107 1489 146 8 75 chr4 68519516 68519782 -87110338 + ORR1A2 LTR MaLR 1 248 -79 3 1107 258 207 17 3 chr4 68520050 68520120 -87110000 + RLTR22_Mus LTR ERVK 1 70 -1778 3 1107 25 0 0 0 chr4 68520140 68520165 -87109955 + AT_rich Low_complexity Low_complexity 1 25 0 3 1107 268 203 15 15 chr4 68520192 68520257 -87109863 + RLTR22_Mus LTR ERVK 95 159 -1649 3 1107 295 8 0 157 chr4 68520263 68520410 -87109710 + (ATATG)n Simple_repeat Simple_repeat 3 126 0 3 1107 2901 219 67 30 chr4 68520410 68520524 -87109596 + RLTR22_Mur LTR ERVK 161 266 -1582 3 1107 1197 61 0 0 chr4 68520524 68520671 -87109449 - B1_Mm SINE Alu 0 147 1 3 1107 2901 219 67 30 chr4 68520671 68521348 -87108772 + RLTR22_Mur LTR ERVK 267 981 -867 3 1107 353 347 51 65 chr4 68521534 68521750 -87108370 + RMER12 LTR ERVK 1110 1322 0 3 1107 305 374 157 3 chr4 68521751 68522089 -87108031 - L2a LINE L2 -3 3423 3034 3 1107 370 315 0 75 chr4 68522094 68522214 -87107906 + MTEa LTR MaLR 6 116 -263 3 1107 255 93 0 0 chr4 68522425 68522468 -87107652 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1107 462 36 0 0 chr4 68522850 68522906 -87107214 + (TGG)n Simple_repeat Simple_repeat 1 56 0 4 1107 6449 8 0 0 chr4 68522929 68523652 -87106468 + L1Md_A LINE L1 5860 6582 0 4 1107 531 43 0 0 chr4 68523946 68524016 -87106104 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1107 315 329 50 31 chr4 68524100 68524248 -87105872 - L2b LINE L2 -180 3207 3053 4 1107 282 365 65 0 chr4 68524964 68525071 -87105049 + RSINE1 SINE B4 8 121 -44 4 1107 225 0 0 0 chr4 68525071 68525096 -87105024 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1107 279 0 0 0 chr4 68525096 68525126 -87104994 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1107 3285 48 0 10 chr4 68525374 68525791 -87104329 - L1Md_F3 LINE L1 -1 6583 6171 4 1107 180 164 32 32 chr4 68527013 68527076 -87103044 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 4 1107 229 338 80 12 chr4 68527122 68527284 -87102836 - MIRb SINE MIR -51 217 45 4 1107 360 0 0 0 chr4 68528208 68528248 -87101872 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1107 271 255 71 18 chr4 68528783 68528895 -87101225 - L1ME1 LINE L1 -207 5972 5855 5 1107 291 300 105 11 chr4 68529180 68529280 -87100840 + MER63B DNA AcHobo 280 388 -48 5 1107 1563 25 56 0 chr4 68529510 68529706 -87100414 + L1Md_F3 LINE L1 6365 6571 -13 5 1107 242 108 30 30 chr4 68529901 68529968 -87100152 + T-rich Low_complexity Low_complexity 4 70 0 5 1107 658 250 20 14 chr4 68529977 68530123 -87099997 - B1_Mur3 SINE Alu -1 148 2 5 1107 195 69 0 0 chr4 68530210 68530239 -87099881 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1107 205 337 52 21 chr4 68530777 68530874 -87099246 - MIRb SINE MIR -100 168 69 5 1107 378 235 0 0 chr4 68530931 68531033 -87099087 + Lx2B LINE L1 6895 6996 -4 5 1107 323 328 115 37 chr4 68531520 68531789 -87098331 - MamRep434 DNA TcMar -131 295 6 5 1107 225 300 0 0 chr4 68531790 68531850 -87098270 + L1M5 LINE L1 5603 5662 -462 6 1107 301 340 68 54 chr4 68533306 68533511 -87096609 - L1MC4a LINE L1 -1988 5894 5687 6 1107 511 283 106 48 chr4 68534536 68534725 -87095395 + B4A SINE B4 50 249 -43 6 1107 357 164 0 0 chr4 68534794 68534867 -87095253 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1107 222 62 0 0 chr4 68535059 68535091 -87095029 + (CAG)n Simple_repeat Simple_repeat 1 32 0 6 1107 199 375 85 45 chr4 68535825 68536001 -87094119 + MIRb SINE MIR 3 185 -83 6 1107 249 246 101 68 chr4 68536610 68536758 -87093362 - Charlie4a DNA MER1_type -4 504 352 6 1107 224 391 21 35 chr4 68536888 68537031 -87093089 - MIRc SINE MIR -99 169 29 6 1107 228 163 0 0 chr4 68537130 68537173 -87092947 + (CCA)n Simple_repeat Simple_repeat 2 44 0 6 1107 253 246 0 28 chr4 68537173 68537244 -87092876 + CT-rich Low_complexity Low_complexity 2 70 0 6 1107 290 357 53 62 chr4 68538541 68538768 -87091352 - MER102b DNA MER1_type -80 261 37 7 1107 297 0 0 0 chr4 68539073 68539106 -87091014 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1107 278 138 17 0 chr4 68539557 68539615 -87090505 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1107 1546 52 5 0 chr4 68539908 68540100 -87090020 + B2_Mm1t SINE B2 1 193 0 7 1107 3678 143 91 5 chr4 68540109 68540733 -87089387 + RLTR33 LTR ERVK 1 678 0 7 1107 745 250 133 0 chr4 68541063 68541259 -87088861 + URR1A DNA MER1_type 2 223 -3 7 1107 1182 107 0 0 chr4 68541448 68541625 -87088495 + (TTC)n Simple_repeat Simple_repeat 2 178 0 7 1107 463 337 59 55 chr4 68541696 68541969 -87088151 - B4A SINE B4 -17 275 2 7 1107 204 240 0 0 chr4 68542769 68542869 -87087251 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 1107 207 0 0 0 chr4 68543710 68543733 -87086387 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1107 208 352 23 0 chr4 68544002 68544090 -87086030 - MIR3 SINE MIR -4 204 115 8 1107 1861 296 92 76 chr4 68544365 68545512 -87084608 + Lx5 LINE L1 5885 7041 -17 8 1107 181 77 0 71 chr4 68545571 68545613 -87084507 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1107 327 25 0 0 chr4 68545880 68545920 -87084200 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 8 1107 288 0 0 0 chr4 68546362 68546394 -87083726 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1107 419 95 0 13 chr4 68546394 68546469 -87083651 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1107 1290 189 70 50 chr4 68546583 68546883 -87083237 + RLTR41 LTR ERV1 1 306 -140 8 1107 432 86 0 0 chr4 68547081 68547151 -87082969 + (TC)n Simple_repeat Simple_repeat 2 71 0 8 1107 799 278 149 19 chr4 68547569 68548214 -87081906 + L1M3 LINE L1 4037 4765 -1375 8 1107 280 302 110 22 chr4 68548480 68548616 -87081504 + MIRc SINE MIR 25 175 -87 8 1107 229 357 43 43 chr4 68549928 68550089 -87080031 + MLT1A1 LTR MaLR 248 408 0 9 138 990 281 130 28 chr4 68550555 68551130 -87078990 - L1MA8 LINE L1 -57 6234 5601 9 1108 202 329 96 36 chr4 68551753 68551920 -87078200 + L2b LINE L2 1924 2100 -1319 9 1108 292 336 37 0 chr4 68552466 68552600 -87077520 + L1MD2 LINE L1 5994 6132 -227 9 1108 784 306 111 40 chr4 68553008 68553478 -87076642 + MER119 DNA MER1_type 81 583 0 9 1108 402 21 0 0 chr4 68553669 68553716 -87076404 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1108 183 314 20 0 chr4 68553871 68553922 -87076198 + L2b LINE L2 3304 3355 -20 9 1108 254 164 18 0 chr4 68554191 68554246 -87075874 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1108 22 0 0 0 chr4 68554476 68554498 -87075622 + AT_rich Low_complexity Low_complexity 1 22 0 9 1108 225 0 0 0 chr4 68554510 68554535 -87075585 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1108 207 139 0 0 chr4 68554552 68554588 -87075532 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 1108 846 304 62 64 chr4 68555632 68555811 -87074309 - Lx8 LINE L1 -143 7330 7156 1 1108 2369 186 109 6 chr4 68555811 68556341 -87073779 - RMER4B LTR ERVK 0 585 1 1 1108 846 304 62 64 chr4 68556341 68556643 -87073477 - Lx8 LINE L1 -318 7155 6850 1 1108 480 82 0 56 chr4 68557023 68557113 -87073007 + L1Md_F2 LINE L1 6485 6569 -13 1 1108 191 61 30 0 chr4 68557151 68557184 -87072936 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1108 575 27 14 0 chr4 68558560 68558633 -87071487 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1108 307 333 0 0 chr4 68560390 68560495 -87069625 + ID_B1 SINE B4 120 224 0 1 1108 919 267 59 5 chr4 68562706 68562928 -87067192 + Lx6 LINE L1 7199 7432 -28 1 1108 468 313 81 28 chr4 68564641 68564940 -87065180 + LTR48 LTR ERV1 11 333 -311 1 1108 208 298 0 17 chr4 68566056 68566114 -87064006 + GA-rich Low_complexity Low_complexity 4 60 0 1 1108 212 152 0 0 chr4 68567277 68567310 -87062810 + ID4 SINE ID 2 34 -49 1 1108 192 286 70 14 chr4 68567720 68567791 -87062329 - L3 LINE CR1 -2119 2370 2296 1 1108 648 0 0 0 chr4 68568314 68568386 -87061734 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1108 360 0 0 0 chr4 68568386 68568425 -87061695 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1108 521 302 79 28 chr4 68568497 68568674 -87061446 + MER20 DNA MER1_type 26 211 -8 1 1108 212 390 0 0 chr4 68568892 68568974 -87061146 + ID4_ SINE ID 2 83 0 1 1108 414 318 14 125 chr4 68569022 68569238 -87060882 + B4A SINE B4 41 232 -60 1 1108 288 0 0 0 chr4 68569319 68569351 -87060769 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1108 202 385 9 18 chr4 68570557 68570668 -87059452 - MIR SINE MIR -122 140 31 1 1108 340 318 59 45 chr4 68570671 68570892 -87059228 + MER33 DNA MER1_type 28 251 -73 1 1108 189 286 78 16 chr4 68571792 68571856 -87058264 + MIRm SINE MIR 95 162 -114 1 1108 665 334 141 69 chr4 68571862 68572530 -87057590 + LTR78 LTR ERV1 4 719 -585 1 1108 242 358 26 45 chr4 68572642 68572797 -87057323 + LTR78 LTR ERV1 790 941 -363 1 1108 566 306 57 49 chr4 68573064 68573414 -87056706 + RMER17C LTR ERVK 1 353 -57 1 1108 478 329 0 0 chr4 68573675 68573818 -87056302 - RSINE1 SINE B4 -20 145 3 1 1108 1335 97 0 5 chr4 68574865 68575052 -87055068 + B2_Mm2 SINE B2 2 187 -8 1 1108 232 349 30 60 chr4 68575633 68575767 -87054353 - MIRb SINE MIR -17 251 122 1 1108 886 89 0 7 chr4 68576971 68577107 -87053013 - L1_Mus1 LINE L1 0 6567 6433 1 1108 201 121 0 0 chr4 68578196 68578229 -87051891 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1108 234 173 154 0 chr4 68578845 68578897 -87051223 - B3A SINE B2 -136 62 3 1 1108 208 0 0 59 chr4 68579137 68579171 -87050949 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1108 300 119 0 0 chr4 68579188 68579247 -87050873 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1108 351 0 0 0 chr4 68581207 68581246 -87048874 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1108 2106 268 133 28 chr4 68581709 68581803 -87048317 + Lx6 LINE L1 6644 6737 -723 1 1108 207 0 0 0 chr4 68581803 68581826 -87048294 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1108 2106 268 133 28 chr4 68581826 68582446 -87047674 + Lx6 LINE L1 6738 7432 -28 1 1108 180 111 0 0 chr4 68583370 68583397 -87046723 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1108 372 22 0 0 chr4 68584584 68584629 -87045491 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1108 618 39 48 0 chr4 68585521 68585624 -87044496 + L1Md_F3 LINE L1 6475 6582 -2 1 1108 683 310 46 0 chr4 68585625 68585822 -87044298 - MER58A DNA MER1_type -13 211 6 1 1108 477 333 49 97 chr4 68586112 68586189 -87043931 + MTE2b LTR MaLR 10 76 -303 1 1108 1021 162 114 20 chr4 68586189 68586390 -87043730 - URR1A DNA MER1_type -2 224 5 1 1108 477 286 242 65 chr4 68586390 68586641 -87043479 + MTE2b LTR MaLR 77 379 0 1 1108 290 333 0 0 chr4 68587231 68587309 -87042811 - MamSINE1 SINE tRNA -190 100 23 1 1108 468 0 0 0 chr4 68587958 68588010 -87042110 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1108 226 226 64 11 chr4 68588181 68588275 -87041845 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 1 1108 280 317 50 0 chr4 68588286 68588387 -87041733 - PB1D9 SINE Alu -7 113 8 1 1108 243 314 44 37 chr4 68589178 68589269 -87040851 + ID4_ SINE ID 1 88 -64 1 1108 238 338 52 65 chr4 68590348 68590503 -87039617 + MIRb SINE MIR 88 240 -28 1 1108 354 45 0 0 chr4 68590999 68591043 -87039077 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1108 1360 294 60 36 chr4 68593702 68594403 -87035717 - L1MC1 LINE L1 -24 6309 5592 1 1108 349 324 201 13 chr4 68594960 68595200 -87034920 + B4A SINE B4 3 287 -5 1 1108 435 63 0 0 chr4 68595245 68595308 -87034812 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1108 22 0 0 0 chr4 68595774 68595796 -87034324 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 441 0 0 0 chr4 68596702 68596751 -87033369 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1108 414 100 0 0 chr4 68597564 68597624 -87032496 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1108 325 254 28 48 chr4 68597634 68597779 -87032341 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 1108 732 23 0 0 chr4 68597791 68597877 -87032243 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1108 426 20 0 0 chr4 68597877 68597927 -87032193 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1108 233 77 51 0 chr4 68597930 68597969 -87032151 + (CACCAT)n Simple_repeat Simple_repeat 1 41 0 1 1108 375 23 0 0 chr4 68598749 68598793 -87031327 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1108 4062 77 29 2 chr4 68599135 68599681 -87030439 + L1_Mus1 LINE L1 6007 6567 0 1 1108 468 0 0 0 chr4 68601826 68601878 -87028242 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1108 331 356 48 97 chr4 68602016 68602181 -87027939 - B4A SINE B4 -134 158 2 1 1108 246 81 0 0 chr4 68604593 68604630 -87025490 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1 1108 189 147 0 0 chr4 68604630 68604664 -87025456 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1 1108 191 325 12 36 chr4 68605937 68606020 -87024100 + MIRc SINE MIR 2 82 -186 1 1108 440 325 36 10 chr4 68606804 68606997 -87023123 - MIR SINE MIR -28 234 37 1 1108 323 46 14 58 chr4 68607312 68607381 -87022739 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 1 1108 183 156 0 0 chr4 68607723 68607755 -87022365 + CT-rich Low_complexity Low_complexity 2 33 0 1 1108 477 0 0 0 chr4 68609769 68609822 -87020298 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1108 369 0 0 0 chr4 68609822 68609862 -87020258 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1108 215 0 67 0 chr4 68610926 68610956 -87019164 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1108 1214 73 6 0 chr4 68612435 68612614 -87017506 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1108 221 333 37 56 chr4 68612846 68612954 -87017166 + MIR3 SINE MIR 15 120 -88 1 1108 582 93 0 0 chr4 68614594 68614680 -87015440 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1108 232 189 13 39 chr4 68614701 68614778 -87015342 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1108 205 265 0 14 chr4 68615271 68615340 -87014780 + CT-rich Low_complexity Low_complexity 6 73 0 1 1108 187 194 169 75 chr4 68616400 68616510 -87013610 + MIR SINE MIR 81 204 -64 1 1108 180 111 0 0 chr4 68617081 68617108 -87013012 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1108 328 244 103 17 chr4 68617613 68617730 -87012390 + ID_B1 SINE B4 98 224 0 1 1108 227 204 0 0 chr4 68617730 68617774 -87012346 + GA-rich Low_complexity Low_complexity 3 46 0 1 1108 600 340 38 38 chr4 68618093 68618438 -87011682 - MER121 Unknown Unknown -21 391 47 1 1108 300 171 0 0 chr4 68618897 68618979 -87011141 + A-rich Low_complexity Low_complexity 1 82 0 1 1108 585 0 0 0 chr4 68619583 68619648 -87010472 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1108 189 0 0 0 chr4 68619648 68619668 -87010452 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1108 262 310 0 14 chr4 68619670 68619742 -87010378 - RSINE1 SINE B4 -41 124 54 1 1108 423 325 68 32 chr4 68619850 68620130 -87009990 - B4A SINE B4 0 292 3 1 1108 35 71 0 0 chr4 68620133 68620203 -87009917 + AT_rich Low_complexity Low_complexity 1 70 0 1 1108 3092 8 43 0 chr4 68621830 68622182 -87007938 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1108 52975 25 12 2 chr4 68622182 68628563 -87001557 - IAPEz-int LTR ERVK 0 6481 38 1 1108 3092 8 43 0 chr4 68628576 68628928 -87001192 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1108 683 59 0 10 chr4 68629142 68629244 -87000876 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1108 216 301 178 0 chr4 68629584 68629657 -87000463 + RSINE1 SINE B4 48 133 -32 1 1108 414 0 0 0 chr4 68629678 68629724 -87000396 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1108 245 315 82 0 chr4 68629803 68629876 -87000244 + MLT1K LTR MaLR 317 395 -200 1 1108 246 361 128 9 chr4 68630173 68630282 -86999838 + MLT1E1 LTR MaLR 6 127 -527 1 1108 973 242 74 4 chr4 68630502 68630771 -86999349 + Lx6 LINE L1 7147 7434 -26 1 1108 256 411 8 50 chr4 68631733 68631994 -86998126 - MIRb SINE MIR -11 257 8 1 1108 2609 68 0 46 chr4 68632164 68632534 -86997586 - L1_Mus1 LINE L1 -2 6565 6213 1 1108 211 281 0 15 chr4 68633383 68633448 -86996672 + GA-rich Low_complexity Low_complexity 3 66 0 1 1108 294 324 9 9 chr4 68634637 68634749 -86995371 - Lx8 LINE L1 -315 7158 7047 1 1108 23 0 0 0 chr4 68635181 68635204 -86994916 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 244 156 77 13 chr4 68635546 68635624 -86994496 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 1 1108 194 344 62 0 chr4 68636114 68636178 -86993942 + MIRb SINE MIR 22 89 -179 1 1108 8885 87 4 1 chr4 68636481 68638487 -86991633 - L1Md_F2 LINE L1 -2 6580 4571 1 1108 33438 76 1 8 chr4 68638522 68644726 -86985394 - L1Md_T LINE L1 0 6582 424 2 1108 405 296 75 47 chr4 68645858 68646071 -86984049 + MER33 DNA MER1_type 25 243 -81 2 1108 266 291 37 25 chr4 68646717 68646798 -86983322 + LFSINE_Vert SINE SINE 2 83 -376 2 1108 704 254 0 6 chr4 68647346 68647524 -86982596 + Lx9 LINE L1 6775 6951 -693 2 1108 810 308 48 30 chr4 68647583 68647978 -86982142 + Lx9 LINE L1 7133 7534 -110 2 1108 22 0 0 0 chr4 68648016 68648038 -86982082 + AT_rich Low_complexity Low_complexity 1 22 0 2 1108 24 67 0 0 chr4 68648542 68648587 -86981533 + AT_rich Low_complexity Low_complexity 1 45 0 2 1108 4604 27 0 0 chr4 68648670 68649196 -86980924 - L1Md_F2 LINE L1 -16 6566 6041 2 1108 724 221 21 0 chr4 68649247 68649392 -86980728 - B1_Mur4 SINE Alu 0 150 3 2 1108 833 129 9 1 chr4 68649770 68649918 -86980202 - Lx3C LINE L1 -339 6637 6486 2 1108 1372 166 80 30 chr4 68649921 68650220 -86979900 + Lx3B LINE L1 6654 6967 -6 2 1108 416 339 24 0 chr4 68651131 68651255 -86978865 + ID_B1 SINE B4 94 220 -4 2 1108 545 141 10 0 chr4 68651772 68651871 -86978249 + GA-rich Low_complexity Low_complexity 2 101 0 2 1108 229 175 0 0 chr4 68651880 68651904 -86978216 + polypurine Low_complexity Low_complexity 1 24 0 2 1108 994 121 23 0 chr4 68651904 68652077 -86978043 + (AGGGGG)n Simple_repeat Simple_repeat 4 180 0 2 1108 229 175 0 0 chr4 68652077 68652092 -86978028 + polypurine Low_complexity Low_complexity 25 39 0 2 1108 431 294 95 64 chr4 68652638 68652768 -86977352 + L1MC LINE L1 2904 3028 -3118 2 1108 3171 76 45 0 chr4 68652768 68653191 -86976929 - L1_Mus1 LINE L1 0 6567 6126 2 1108 431 295 99 63 chr4 68653191 68653490 -86976630 + L1MC LINE L1 3029 3382 -2764 2 1108 360 0 0 0 chr4 68653558 68653598 -86976522 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2 1108 2404 88 3 15 chr4 68653639 68653975 -86976145 - L1_Mus1 LINE L1 0 6567 6236 2 1108 3350 104 2 0 chr4 68653975 68654484 -86975636 + L1_Mm LINE L1 4965 5474 -409 2 1108 250 407 8 0 chr4 68654597 68654715 -86975405 + B4A SINE B4 169 287 -5 2 1108 547 329 81 65 chr4 68654772 68655165 -86974955 + L1MD LINE L1 3847 4253 -1893 2 1108 484 62 0 36 chr4 68655165 68655249 -86974871 + L1Md_F2 LINE L1 6502 6582 0 2 1108 547 329 81 65 chr4 68655249 68655287 -86974833 + L1MD LINE L1 4254 4285 -1861 2 1108 4065 236 70 11 chr4 68655353 68656405 -86973715 + Lx6 LINE L1 6345 7458 -2 2 1108 32378 66 6 2 chr4 68656575 68661754 -86968366 + L1Md_F3 LINE L1 446 5586 -297 2 1108 7587 52 13 5 chr4 68661754 68662729 -86967391 + L1Md_F3 LINE L1 5587 6569 -15 2 1108 371 357 37 26 chr4 68662990 68663180 -86966940 + L1ME1 LINE L1 5985 6176 -3 2 1108 437 303 62 42 chr4 68663191 68663384 -86966736 + B3A SINE B2 1 197 -1 2 1108 201 24 47 47 chr4 68663659 68663702 -86966418 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1108 1131 89 0 0 chr4 68663702 68663848 -86966272 - B1_Mus1 SINE Alu -2 146 1 2 1108 6636 96 37 6 chr4 68664009 68664629 -86965491 - RLTR13D2 LTR ERVK 0 1023 398 2 1108 2126 84 3 49 chr4 68664629 68664955 -86965165 - L1_Mus2 LINE L1 0 6566 6256 2 1108 6636 96 37 6 chr4 68664955 68665324 -86964796 - RLTR13D2 LTR ERVK -626 397 4 2 1108 4663 121 44 18 chr4 68665525 68666291 -86963829 - Lx3C LINE L1 -7 6969 6184 2 1108 1241 105 11 5 chr4 68666764 68666955 -86963165 + Lx2A1 LINE L1 6414 6605 -403 2 1108 1736 107 30 0 chr4 68666955 68667225 -86962895 + Lx2A1 LINE L1 6728 7005 -3 2 1108 215 157 19 38 chr4 68667229 68667282 -86962838 + A-rich Low_complexity Low_complexity 2 53 0 2 1108 27 0 0 0 chr4 68667393 68667420 -86962700 + AT_rich Low_complexity Low_complexity 1 27 0 2 1108 755 29 0 0 chr4 68667743 68667846 -86962274 - L1Md_T LINE L1 0 6582 6480 2 1108 4706 57 0 0 chr4 68667846 68668427 -86961693 + L1Md_T LINE L1 5901 6481 -101 2 1108 26 50 0 0 chr4 68668479 68668519 -86961601 + AT_rich Low_complexity Low_complexity 1 40 0 2 1108 376 43 29 0 chr4 68669438 68669507 -86960613 - L1_Mus3 LINE L1 -5 6633 6563 2 1108 334 268 17 59 chr4 68670643 68670762 -86959358 + MER3 DNA MER1_type 31 144 -65 2 1108 320 267 70 33 chr4 68670755 68670903 -86959217 - B3 SINE B2 0 216 63 2 1108 1126 237 161 7 chr4 68670911 68671221 -86958899 + MTD LTR MaLR 62 419 0 2 1108 399 308 48 21 chr4 68671253 68671439 -86958681 - Lx6 LINE L1 -21 7439 7249 2 1108 4306 90 8 2 chr4 68671457 68672046 -86958074 - L1_Mus1 LINE L1 0 6567 5975 2 1108 7528 72 7 0 chr4 68672046 68673128 -86956992 + L1_Mus1 LINE L1 4889 5978 -604 2 1108 229 337 78 39 chr4 68673126 68673228 -86956892 - Lx5 LINE L1 -178 6872 6767 2 1108 207 100 0 0 chr4 68673235 68673265 -86956855 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1108 226 216 0 0 chr4 68673600 68673651 -86956469 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1108 3368 249 16 9 chr4 68674428 68675215 -86954905 + RCHARR1 DNA MER1_type 33 826 -148 2 1108 1072 70 20 20 chr4 68675215 68675361 -86954759 + B1_Mus1 SINE Alu 3 148 0 2 1108 216 191 0 0 chr4 68675366 68675413 -86954707 + A-rich Low_complexity Low_complexity 2 48 0 2 1108 626 64 64 0 chr4 68675572 68675666 -86954454 + B1_Mus2 SINE Alu 47 146 -1 2 1108 206 62 31 0 chr4 68675667 68675699 -86954421 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1108 430 270 60 0 chr4 68675723 68675823 -86954297 + RSINE1 SINE B4 34 139 -26 2 1108 537 115 0 0 chr4 68675825 68675912 -86954208 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1108 1046 58 43 0 chr4 68675947 68676086 -86954034 + B1_Mus2 SINE Alu 2 146 -1 2 1108 225 219 0 0 chr4 68676087 68676160 -86953960 + A-rich Low_complexity Low_complexity 1 73 0 2 1108 557 288 64 21 chr4 68677143 68677423 -86952697 + MER33 DNA MER1_type 1 292 -32 2 1108 557 262 98 10 chr4 68677573 68677766 -86952354 - B3 SINE B2 -4 212 3 2 1108 1335 288 61 24 chr4 68678077 68678586 -86951534 + RMER5 LTR ERV1 3 530 -4 2 1108 484 119 27 18 chr4 68679202 68679313 -86950807 + GA-rich Low_complexity Low_complexity 1 112 0 2 1108 270 302 94 60 chr4 68680209 68680410 -86949710 - MER33 DNA MER1_type -116 208 1 2 1108 413 283 80 40 chr4 68680417 68680568 -86949552 + MER5A1 DNA MER1_type 1 157 -9 2 1109 357 75 0 0 chr4 68681794 68681847 -86948273 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 2 1109 447 19 0 0 chr4 68681860 68681912 -86948208 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1109 1977 93 7 20 chr4 68682164 68682459 -86947661 - L1_Mus3 LINE L1 -15 6623 6333 2 1109 1156 84 12 6 chr4 68682857 68683025 -86947095 + L1_Mus3 LINE L1 6458 6626 -12 2 1109 269 358 101 24 chr4 68683069 68683238 -86946882 - MER20 DNA MER1_type 0 219 38 2 1109 202 348 100 17 chr4 68683590 68683710 -86946410 - MIRb SINE MIR -115 153 24 2 1109 348 282 77 82 chr4 68684545 68684715 -86945405 - MTEb LTR MaLR -2 377 209 2 1109 677 355 91 43 chr4 68684983 68685490 -86944630 + MT2A LTR ERVL 3 533 0 2 1109 274 354 187 30 chr4 68686419 68686553 -86943567 - RSINE1 SINE B4 -2 163 9 2 1109 234 248 98 83 chr4 68687065 68687197 -86942923 + MLT2C1 LTR ERVL 68 201 -196 2 1109 341 88 0 34 chr4 68687261 68687320 -86942800 + (CATA)n Simple_repeat Simple_repeat 2 58 0 2 1109 1912 213 16 8 chr4 68687344 68687728 -86942392 + ORR1B1 LTR MaLR 7 393 -1 2 1109 202 183 16 32 chr4 68687729 68687791 -86942329 + (TAGG)n Simple_repeat Simple_repeat 3 63 0 2 1109 213 94 0 0 chr4 68687984 68688016 -86942104 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1109 385 321 67 56 chr4 68688738 68688933 -86941187 + B4A SINE B4 2 198 -94 2 1109 1133 100 6 0 chr4 68688955 68689125 -86940995 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 2 1109 478 125 42 0 chr4 68689125 68689221 -86940899 + GA-rich Low_complexity Low_complexity 3 102 0 2 1109 1064 301 0 0 chr4 68689596 68689842 -86940278 + MIR SINE MIR 5 250 -12 2 1109 839 315 40 61 chr4 68690508 68690937 -86939183 - Lx8 LINE L1 -2 7471 7052 2 1109 243 0 0 0 chr4 68690953 68690980 -86939140 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1109 504 0 0 0 chr4 68690983 68691039 -86939081 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1109 397 336 0 0 chr4 68691045 68691152 -86938968 - B1F2 SINE Alu -22 127 21 2 1109 432 222 50 29 chr4 68691239 68691378 -86938742 + L1_Mur3 LINE L1 4599 4740 -1140 2 1109 411 298 27 63 chr4 68691416 68691643 -86938477 - MTD LTR MaLR -98 302 102 2 1109 734 287 106 15 chr4 68691692 68692099 -86938021 + L1M2 LINE L1 4778 5221 -922 2 1109 1128 183 94 60 chr4 68692250 68692569 -86937551 + Lx2B LINE L1 5999 6328 -672 2 1109 624 341 43 65 chr4 68692570 68692877 -86937243 + MTEa LTR MaLR 66 363 -16 2 1109 553 264 111 23 chr4 68693184 68693355 -86936765 - MER58A DNA MER1_type -38 186 1 2 1109 455 328 164 48 chr4 68693597 68694030 -86936090 - MLT1L LTR MaLR -8 602 120 2 1109 206 314 80 93 chr4 68694604 68694755 -86935365 + MIRb SINE MIR 111 259 -9 2 1109 775 125 15 0 chr4 68695058 68695194 -86934926 + (TC)n Simple_repeat Simple_repeat 1 138 0 2 1109 21 36 0 0 chr4 68696055 68696083 -86934037 + AT_rich Low_complexity Low_complexity 1 28 0 2 1109 438 325 31 16 chr4 68696231 68696425 -86933695 + MIRb SINE MIR 72 268 0 2 1109 292 291 189 13 chr4 68696611 68696764 -86933356 + L3 LINE CR1 4082 4261 -228 2 1109 5810 45 1 16 chr4 68696781 68697517 -86932603 - L1Md_F2 LINE L1 0 6582 5858 2 1109 246 32 0 0 chr4 68697517 68697548 -86932572 + L1_Mm LINE L1 2797 2827 -3056 2 1109 269 292 28 0 chr4 68698655 68698727 -86931393 - Tigger13a DNA MER2_type -1 770 697 2 1109 30 0 0 0 chr4 68699149 68699179 -86930941 + AT_rich Low_complexity Low_complexity 1 30 0 2 1109 645 309 50 14 chr4 68700044 68700641 -86929479 - L1M4 LINE L1 -582 5602 4987 2 1109 267 152 0 0 chr4 68700781 68700827 -86929293 + T-rich Low_complexity Low_complexity 1 46 0 3 1109 3552 109 3 37 chr4 68700830 68701394 -86928726 + Lx3A LINE L1 6428 6972 -9 3 1109 298 275 44 37 chr4 68701462 68701598 -86928522 - L1M4 LINE L1 -1387 4759 4623 2 1109 452 316 101 0 chr4 68701617 68701845 -86928275 - L1M4 LINE L1 -2804 3342 3092 2 1109 474 33 0 0 chr4 68702217 68702277 -86927843 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1109 181 283 117 0 chr4 68702283 68702343 -86927777 + MIRb SINE MIR 112 178 -90 3 1109 24 32 0 0 chr4 68702506 68702537 -86927583 + AT_rich Low_complexity Low_complexity 1 31 0 3 1109 985 45 87 22 chr4 68704894 68705032 -86925088 - B1_Mus2 SINE Alu 0 147 1 3 1109 2030 280 29 14 chr4 68706005 68706523 -86923597 - Lx5 LINE L1 -9 7041 6516 3 1109 342 0 0 0 chr4 68706882 68706920 -86923200 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1109 426 229 48 29 chr4 68707123 68707286 -86922834 + L1M5 LINE L1 5311 5473 -767 3 1109 440 301 29 110 chr4 68707541 68707750 -86922370 - B3A SINE B2 0 198 7 3 1109 379 320 62 29 chr4 68707799 68708008 -86922112 + B3 SINE B2 1 216 0 3 1109 990 216 85 59 chr4 68708554 68708865 -86921255 - ORR1C2 LTR MaLR -17 367 1 3 1109 342 0 0 0 chr4 68708964 68709002 -86921118 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1109 276 343 0 0 chr4 68709022 68709127 -86920993 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 3 1109 549 279 26 7 chr4 68709644 68709799 -86920321 - MER5B DNA MER1_type -3 175 18 3 1109 213 256 0 0 chr4 68710490 68710529 -86919591 - MER5A DNA MER1_type -139 50 12 3 1109 214 200 0 0 chr4 68711845 68711885 -86918235 + A-rich Low_complexity Low_complexity 1 40 0 3 1109 398 175 40 30 chr4 68711967 68712067 -86918053 + Lx4B LINE L1 6953 7053 -5 3 1109 22 35 0 0 chr4 68712067 68712096 -86918024 + AT_rich Low_complexity Low_complexity 1 29 0 3 1109 22 35 0 0 chr4 68712650 68712679 -86917441 + AT_rich Low_complexity Low_complexity 1 29 0 3 1109 411 231 8 49 chr4 68712751 68712874 -86917246 - L1VL1 LINE L1 -6068 354 237 3 1109 207 179 0 0 chr4 68712974 68713013 -86917107 + CT-rich Low_complexity Low_complexity 3 41 0 3 1109 303 261 87 120 chr4 68713016 68713199 -86916921 - Lx8 LINE L1 -115 7358 7182 3 1109 343 173 0 24 chr4 68713214 68713297 -86916823 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1109 270 136 0 0 chr4 68713546 68713590 -86916530 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1109 320 372 120 5 chr4 68713590 68713774 -86916346 + LTR33 LTR ERVL 249 453 -62 3 1109 333 0 0 0 chr4 68715229 68715266 -86914854 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1109 709 288 75 11 chr4 68716743 68717118 -86913002 - L1_Mur3 LINE L1 -3358 2522 2124 3 1109 585 304 98 73 chr4 68717970 68718328 -86911792 + MTEa LTR MaLR 13 379 0 3 1109 252 167 0 0 chr4 68719034 68719082 -86911038 + (TTG)n Simple_repeat Simple_repeat 2 49 0 3 1109 208 267 42 115 chr4 68719750 68719915 -86910205 - MIR3 SINE MIR -41 167 15 3 1109 474 282 0 9 chr4 68720306 68720417 -86909703 + B4A SINE B4 183 292 0 3 1109 4882 77 0 5 chr4 68720879 68721533 -86908587 + L1Md_F2 LINE L1 5922 6572 -10 3 1109 4166 39 4 4 chr4 68722207 68722721 -86907399 + L1Md_T LINE L1 6069 6582 0 3 1109 552 289 85 66 chr4 68723684 68723896 -86906224 + MTD LTR MaLR 1 206 -213 3 1109 7389 82 4 2 chr4 68723896 68725031 -86905089 + L1_Mus2 LINE L1 5430 6566 0 3 1109 497 281 202 1 chr4 68725068 68725256 -86904864 + MTD LTR MaLR 196 405 -14 3 1109 454 176 0 0 chr4 68726082 68726156 -86903964 + ORR1C1 LTR MaLR 1 74 -304 3 1109 1548 327 109 33 chr4 68726157 68727132 -86902988 - Lx5 LINE L1 -147 6903 5855 3 1109 534 284 34 11 chr4 68727128 68727306 -86902814 + Lx6 LINE L1 7276 7457 -3 3 1109 1512 210 32 13 chr4 68727323 68727632 -86902488 + ORR1C1 LTR MaLR 64 378 0 3 1109 443 18 18 0 chr4 68727833 68727889 -86902231 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1109 696 24 0 0 chr4 68727891 68727973 -86902147 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 1109 329 285 87 24 chr4 68728055 68728181 -86901939 - B3A SINE B2 -64 134 1 3 1109 295 372 73 34 chr4 68729253 68729459 -86900661 + MER20 DNA MER1_type 2 215 -4 3 1109 961 322 7 11 chr4 68729774 68730050 -86900070 + MTEa LTR MaLR 12 286 -93 3 1109 285 296 0 43 chr4 68730340 68730432 -86899688 + MLT1A0 LTR MaLR 278 365 0 3 1109 5390 219 25 1 chr4 68730489 68731669 -86898451 + Lx2B LINE L1 5780 6987 -13 3 1109 22 35 0 0 chr4 68731688 68731717 -86898403 + AT_rich Low_complexity Low_complexity 1 29 0 3 1109 243 357 58 13 chr4 68731759 68731915 -86898205 + MLT1A0 LTR MaLR 387 549 0 3 1109 26 0 0 0 chr4 68732451 68732477 -86897643 + AT_rich Low_complexity Low_complexity 1 26 0 3 1109 459 0 0 0 chr4 68732560 68732611 -86897509 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1109 204 125 0 0 chr4 68732788 68732820 -86897300 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 3 1109 250 363 105 0 chr4 68732859 68732983 -86897137 - ID_B1 SINE B4 -2 222 86 3 1109 274 87 0 0 chr4 68733731 68733777 -86896343 + Lx3_Mus LINE L1 6962 7007 -2 3 1109 579 307 89 65 chr4 68733832 68734201 -86895919 - L2 LINE L2 -541 2878 2501 3 1109 21 0 0 0 chr4 68734486 68734507 -86895613 + AT_rich Low_complexity Low_complexity 1 21 0 3 1109 398 258 8 0 chr4 68734724 68734844 -86895276 - Lx9 LINE L1 -10 7634 7514 3 1109 883 266 119 21 chr4 68735073 68735432 -86894688 + MT2B LTR ERVL 68 601 0 3 1109 513 326 0 7 chr4 68735788 68735927 -86894193 + B4A SINE B4 111 248 -44 3 1109 804 115 0 0 chr4 68737068 68737190 -86892930 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 3 1109 7463 63 7 0 chr4 68737211 68738151 -86891969 - L1_Mus1 LINE L1 -2 6565 5619 3 1109 629 0 0 0 chr4 68738151 68738220 -86891900 + L1_Mus1 LINE L1 5587 5655 -912 3 1109 538 322 22 28 chr4 68739789 68739968 -86890152 - ID_B1 SINE B4 -16 208 31 3 1109 3321 251 22 1 chr4 68740167 68740884 -86889236 - Lx5 LINE L1 -3 7047 6316 3 1109 198 363 112 35 chr4 68741205 68741516 -86888604 - L3 LINE CR1 -306 4183 3849 3 1109 21 36 0 0 chr4 68741806 68741834 -86888286 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 2702 103 15 10 chr4 68741970 68742371 -86887749 + MTB_Mm LTR MaLR 1 403 -4 3 1109 492 48 0 0 chr4 68742649 68742712 -86887408 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1109 4028 129 54 20 chr4 68743152 68743834 -86886286 - Lx LINE L1 -12 6642 5938 3 1109 3722 108 5 0 chr4 68743835 68744469 -86885651 + Lx LINE L1 5301 5940 -714 3 1109 217 151 38 0 chr4 68746583 68746636 -86883484 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1109 4416 241 36 11 chr4 68746858 68747889 -86882231 + Lx5 LINE L1 5994 7050 0 3 1109 299 335 109 40 chr4 68748172 68748346 -86881774 + MLT2F LTR ERVL 419 604 -59 3 1109 245 319 32 11 chr4 68748592 68748687 -86881433 - MLT1H2 LTR MaLR -301 188 92 3 1109 2641 98 8 0 chr4 68748913 68749290 -86880830 - L1_Mus3 LINE L1 -1 6637 6258 3 1109 22 56 0 0 chr4 68749457 68749493 -86880627 + AT_rich Low_complexity Low_complexity 1 36 0 3 1109 369 43 0 0 chr4 68749673 68749720 -86880400 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1109 688 199 88 80 chr4 68749727 68749978 -86880142 - Lx9 LINE L1 -12 7632 7380 3 1109 4112 43 2 0 chr4 68750817 68751354 -86878766 - L1Md_F2 LINE L1 -498 6084 5547 3 1109 1226 104 0 20 chr4 68751354 68751550 -86878570 + L1Md_F2 LINE L1 6379 6570 -12 3 1109 24 67 0 0 chr4 68751566 68751611 -86878509 + AT_rich Low_complexity Low_complexity 1 45 0 3 1109 253 226 16 0 chr4 68751819 68751881 -86878239 + MLT1E1A LTR MaLR 609 671 -9 3 1109 229 227 26 13 chr4 68752109 68752185 -86877935 - L1MC LINE L1 -2431 5451 5375 3 1109 259 385 79 62 chr4 68752470 68752647 -86877473 - B4 SINE B4 -108 184 5 3 1109 414 0 0 0 chr4 68752665 68752711 -86877409 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1109 3415 50 36 0 chr4 68752712 68753133 -86876987 - RLTR10C LTR ERVK 0 436 1 3 1109 612 216 18 6 chr4 68753161 68753329 -86876791 + (CATATA)n Simple_repeat Simple_repeat 4 173 0 3 1109 449 236 27 9 chr4 68753329 68753440 -86876680 + RLTR11A2 LTR ERVK 51 163 -364 3 1109 698 135 39 16 chr4 68753424 68753552 -86876568 + RLTR11A2 LTR ERVK 397 527 0 3 1109 1289 253 33 10 chr4 68753552 68753947 -86876173 - Lx9 LINE L1 -24 7620 7217 3 1109 693 264 11 16 chr4 68754004 68754189 -86875931 + Lx9 LINE L1 7017 7200 -444 3 1109 441 326 4 61 chr4 68754305 68754534 -86875586 - B3 SINE B2 0 216 1 3 1109 279 0 0 0 chr4 68754835 68754866 -86875254 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1109 429 76 0 0 chr4 68754866 68754932 -86875188 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1109 857 289 99 58 chr4 68755662 68755913 -86874207 + L1MC1 LINE L1 5454 5728 -605 3 1109 675 118 0 0 chr4 68755913 68756023 -86874097 - Lx LINE L1 -7 6647 6538 3 1109 857 289 99 58 chr4 68756023 68756457 -86873663 + L1MC1 LINE L1 5729 6167 -166 3 1109 339 316 155 40 chr4 68756479 68756808 -86873312 - L3 LINE CR1 -389 4100 3734 3 1109 340 315 19 51 chr4 68757666 68757880 -86872240 + L1MC4a LINE L1 7254 7460 -535 3 1109 348 103 0 0 chr4 68758005 68758063 -86872057 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1109 699 242 63 43 chr4 68758419 68758626 -86871494 - B3 SINE B2 -1 215 5 3 1109 601 358 126 10 chr4 68758636 68759272 -86870848 + MER45B DNA Tip100 97 806 -234 3 1109 353 269 94 27 chr4 68759305 68759454 -86870666 + MER45B DNA Tip100 877 1035 -5 3 1109 366 317 30 0 chr4 68759482 68759649 -86870471 + L1MC4a LINE L1 7431 7602 -280 3 1109 375 379 24 6 chr4 68759984 68760154 -86869966 + MER5A DNA MER1_type 16 188 -1 3 1109 579 15 0 0 chr4 68760164 68760232 -86869888 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1109 272 373 72 36 chr4 68760785 68760952 -86869168 - MLT1A0 LTR MaLR -29 345 173 3 1109 237 302 9 28 chr4 68760954 68761063 -86869057 + GA-rich Low_complexity Low_complexity 2 108 0 3 1109 285 128 0 0 chr4 68761069 68761116 -86869004 + (GGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1109 366 354 25 27 chr4 68761118 68761296 -86868824 - MLT1A0 LTR MaLR -187 187 4 3 1109 456 302 16 0 chr4 68762243 68762369 -86867751 - Lx8 LINE L1 -299 7174 7047 4 1109 384 323 72 14 chr4 68762950 68763242 -86866878 + L1MEg LINE L1 818 1126 -4958 4 1109 782 45 36 0 chr4 68763848 68763959 -86866161 - L1_Mus1 LINE L1 -557 6010 5896 4 1109 1410 71 0 0 chr4 68763959 68764142 -86865978 + L1_Mus1 LINE L1 6385 6567 0 4 1109 278 342 8 40 chr4 68764883 68765008 -86865112 + MER117 DNA MER1_type 51 171 -26 4 1109 270 401 56 26 chr4 68765011 68765244 -86864876 - L2c LINE L2 -25 3362 3123 4 1109 252 0 0 0 chr4 68767295 68767323 -86862797 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1109 435 38 0 0 chr4 68767323 68767375 -86862745 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1109 2233 47 10 30 chr4 68767901 68768206 -86861914 + L1Md_F3 LINE L1 6272 6570 -14 4 1109 1325 230 155 11 chr4 68768986 68769168 -86860952 - MTD LTR MaLR -2 417 205 4 1109 324 0 0 0 chr4 68769168 68769204 -86860916 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1109 1325 230 155 11 chr4 68769204 68769369 -86860751 - MTD LTR MaLR -215 204 20 4 1109 263 393 60 0 chr4 68770250 68770367 -86859753 - L2b LINE L2 0 3375 3252 4 1109 574 198 0 0 chr4 68771704 68771810 -86858310 + U6 snRNA snRNA 1 106 -1 4 1109 5158 164 4 4 chr4 68771810 68772756 -86857364 + L1_Mur2 LINE L1 3965 4910 -967 4 1109 476 242 107 10 chr4 68772756 68772953 -86857167 + Lx4B LINE L1 6749 7055 -3 4 1109 544 117 0 28 chr4 68772958 68772982 -86857138 + (GGA)n Simple_repeat Simple_repeat 3 26 0 4 1109 1253 69 0 6 chr4 68772982 68773156 -86856964 + (GAA)n Simple_repeat Simple_repeat 3 175 0 4 1109 544 117 0 28 chr4 68773156 68773237 -86856883 + (GGA)n Simple_repeat Simple_repeat 3 81 0 4 1109 220 179 0 0 chr4 68773238 68773277 -86856843 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 4 1109 711 0 0 0 chr4 68773378 68773457 -86856663 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 4 1109 8561 72 1 6 chr4 68773472 68775286 -86854834 - L1Md_F2 LINE L1 -19 6563 4761 4 1109 1183 94 0 11 chr4 68775287 68775469 -86854651 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1109 828 71 0 0 chr4 68775473 68775585 -86854535 + (GGA)n Simple_repeat Simple_repeat 3 114 0 4 1109 195 125 0 0 chr4 68775585 68775625 -86854495 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 4 1109 600 50 0 0 chr4 68775858 68775938 -86854182 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 1109 208 154 26 0 chr4 68776659 68776698 -86853422 + (CAT)n Simple_repeat Simple_repeat 2 41 0 4 1109 181 393 28 9 chr4 68777130 68777238 -86852882 - MIRc SINE MIR -152 116 7 4 1109 22 0 0 0 chr4 68777863 68777885 -86852235 + AT_rich Low_complexity Low_complexity 1 22 0 4 1109 468 311 46 23 chr4 68779120 68779350 -86850770 + MIR SINE MIR 1 231 -31 4 1109 364 305 0 8 chr4 68779864 68779996 -86850124 + CT-rich Low_complexity Low_complexity 2 132 0 4 1109 297 237 0 33 chr4 68780000 68780061 -86850059 - PB1D9 SINE Alu -61 59 1 4 1109 243 0 0 0 chr4 68781332 68781359 -86848761 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4 1109 438 20 0 0 chr4 68781513 68781564 -86848556 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1109 295 309 20 69 chr4 68782234 68782335 -86847785 - Tigger5 DNA MER2_type -2173 233 138 4 1109 316 21 62 0 chr4 68782341 68782389 -86847731 + (CATAT)n Simple_repeat Simple_repeat 2 52 0 4 1109 32 0 0 0 chr4 68782652 68782684 -86847436 + AT_rich Low_complexity Low_complexity 1 32 0 4 1109 21 0 0 0 chr4 68784623 68784644 -86845476 + AT_rich Low_complexity Low_complexity 1 21 0 4 1109 265 262 48 0 chr4 68784651 68784777 -86845343 - Lx9 LINE L1 -31 7613 7482 4 1109 358 304 0 39 chr4 68784997 68785127 -86844993 + Lx6 LINE L1 7308 7432 -28 4 1109 803 149 6 18 chr4 68785181 68785352 -86844768 + GA-rich Low_complexity Low_complexity 3 171 0 4 1109 549 64 0 0 chr4 68785350 68785428 -86844692 + (CAA)n Simple_repeat Simple_repeat 2 79 0 4 1109 1154 54 0 20 chr4 68785572 68785722 -86844398 - B1_Mus1 SINE Alu 0 148 2 4 1109 299 290 20 7 chr4 68786025 68786171 -86843949 + (TATATG)n Simple_repeat Simple_repeat 5 152 0 4 1109 183 42 0 0 chr4 68787369 68787393 -86842727 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1109 250 323 132 12 chr4 68787764 68787930 -86842190 - RMER15 LTR ERVL -13 562 377 4 1109 446 302 8 32 chr4 68789777 68789900 -86840220 + MTC LTR MaLR 1 120 -301 4 1109 414 0 0 0 chr4 68790840 68790886 -86839234 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1109 1152 106 35 0 chr4 68791212 68791382 -86838738 + L1_Mus1 LINE L1 6392 6567 0 4 1109 290 360 22 14 chr4 68793050 68793188 -86836932 + MLT1H LTR MaLR 409 547 -2 4 1109 239 325 81 43 chr4 68794603 68794764 -86835356 + MIR SINE MIR 70 236 -26 4 1109 261 309 46 98 chr4 68795017 68795211 -86834909 - MIRb SINE MIR -9 253 70 4 1109 193 191 20 41 chr4 68796197 68796246 -86833874 + MIRb SINE MIR 209 256 -12 4 1109 303 234 13 0 chr4 68796579 68796656 -86833464 + GA-rich Low_complexity Low_complexity 1 78 0 4 1109 260 290 14 0 chr4 68796767 68796836 -86833284 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1109 291 28 0 0 chr4 68797890 68797926 -86832194 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1109 264 185 0 0 chr4 68797956 68798010 -86832110 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 4 1109 456 139 0 0 chr4 68798010 68798089 -86832031 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1109 1188 61 0 0 chr4 68799116 68799264 -86830856 - B1_Mus1 SINE Alu 0 148 1 4 1109 275 0 0 28 chr4 68799465 68799501 -86830619 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1109 206 121 0 0 chr4 68799533 68799566 -86830554 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1109 2556 204 36 22 chr4 68799594 68800171 -86829949 - RMER4B LTR ERVK 0 585 1 4 1109 234 266 165 31 chr4 68800171 68800268 -86829852 - MER113 DNA MER1_type -312 209 100 4 1109 249 246 87 0 chr4 68800516 68800585 -86829535 + MIRc SINE MIR 116 190 -78 4 1109 508 143 0 0 chr4 68801367 68801444 -86828676 + BC1_Mm scRNA scRNA 1 77 -75 4 1109 276 307 0 62 chr4 68801373 68801453 -86828667 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 4 1109 924 312 50 23 chr4 68801563 68801912 -86828208 + ORR1E LTR MaLR 1 549 0 4 1109 27 29 0 0 chr4 68802046 68802080 -86828040 + AT_rich Low_complexity Low_complexity 1 34 0 4 1109 4966 216 29 82 chr4 68802337 68804465 -86825655 - Lx5 LINE L1 -5 7045 5032 4 1109 676 263 105 54 chr4 68804568 68804845 -86825275 - Lx5 LINE L1 -788 6262 5972 4 1109 3733 211 34 1 chr4 68804869 68805633 -86824487 + Lx5 LINE L1 6251 7039 -11 4 1109 1565 74 0 23 chr4 68806278 68806499 -86823621 - L1Md_F2 LINE L1 -14 6568 6353 4 1109 244 372 23 0 chr4 68806667 68806753 -86823367 - MLT1J1 LTR MaLR -131 313 226 4 1109 21 36 0 0 chr4 68806833 68806861 -86823259 + AT_rich Low_complexity Low_complexity 1 28 0 4 1109 398 292 21 0 chr4 68806868 68806964 -86823156 - B3 SINE B2 -116 100 3 4 1109 22 35 0 0 chr4 68807133 68807162 -86822958 + AT_rich Low_complexity Low_complexity 1 29 0 4 1109 8342 39 0 1 chr4 68807351 68808483 -86821637 - L1Md_F2 LINE L1 0 6582 5452 4 1109 3594 51 0 0 chr4 68808478 68808929 -86821191 + L1_Mm LINE L1 4149 4599 -1284 4 1109 957 247 20 16 chr4 68809005 68809252 -86820868 - RMER1B Other Other -34 1032 785 4 1109 20209 122 41 3 chr4 68809290 68810983 -86819137 - L1_Mus2 LINE L1 -1 6565 4629 4 1109 207 0 0 0 chr4 68810983 68811006 -86819114 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 138 20209 159 83 5 chr4 68811006 68813999 -86816121 - L1_Mus2 LINE L1 -1255 4628 1566 4 1110 5443 142 41 10 chr4 68814002 68814895 -86815225 - L1VL2 LINE L1 -5295 1040 120 4 1110 934 229 74 5 chr4 68814897 68815112 -86815008 - RMER1B Other Other -268 798 569 4 1110 422 264 84 84 chr4 68815076 68815279 -86814841 + RMER1B Other Other 318 520 -546 4 1110 240 35 0 0 chr4 68816278 68816307 -86813813 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 1110 538 364 140 16 chr4 68816716 68817166 -86812954 - MLT1J LTR MaLR 0 512 7 4 1110 26 0 0 0 chr4 68817183 68817209 -86812911 + AT_rich Low_complexity Low_complexity 1 26 0 4 1110 233 255 0 0 chr4 68817211 68817258 -86812862 - MLT1I LTR MaLR 0 411 365 4 1110 315 0 0 0 chr4 68817721 68817756 -86812364 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1110 2063 201 113 50 chr4 68818347 68818922 -86811198 + RMER19C LTR ERVK 1 611 0 4 1110 36255 42 11 13 chr4 68819100 68820749 -86809371 - L1Md_T LINE L1 -1 6581 4917 4 1110 236 167 46 77 chr4 68820749 68820814 -86809306 + RMER20A LTR ERVK 186 248 -268 4 1110 36255 42 11 13 chr4 68820814 68824490 -86805630 - L1Md_T LINE L1 -1 4916 1203 4 1110 8022 77 0 17 chr4 68824456 68825561 -86804559 - L1Md_Gf LINE L1 -5380 1142 57 4 1110 250 372 0 31 chr4 68825704 68825801 -86804319 + L2a LINE L2 3331 3424 -2 4 1110 2787 51 5 19 chr4 68826924 68827303 -86802817 + L1Md_F2 LINE L1 6208 6581 -1 4 1110 379 280 20 7 chr4 68828313 68828464 -86801656 + (CAATT)n Simple_repeat Simple_repeat 2 154 0 4 1110 931 95 0 130 chr4 68829875 68830044 -86800076 + B1_Mm SINE Alu 1 147 0 4 1110 1942 195 27 7 chr4 68830204 68830612 -86799508 + L1_Mur1 LINE L1 5236 5651 -235 4 1110 205 388 17 17 chr4 68831960 68832078 -86798042 + MIRb SINE MIR 107 224 -44 4 1110 216 0 0 0 chr4 68832120 68832144 -86797976 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1110 35743 46 0 4 chr4 68832243 68838490 -86791630 - L1Md_T LINE L1 0 6585 268 4 1110 308 203 14 28 chr4 68839232 68839303 -86790817 - MTEb LTR MaLR 0 379 310 5 1110 1392 227 116 17 chr4 68839331 68839676 -86790444 + RMER19B LTR ERVK 1 379 -523 5 1110 3135 247 82 62 chr4 68839663 68840545 -86789575 + RMER13B LTR ERVK 5 903 -5 5 1110 1242 209 68 14 chr4 68840558 68841008 -86789112 + RMER19B LTR ERVK 339 879 -23 5 1110 13006 7 0 0 chr4 68841008 68842541 -86787579 + L1Md_A LINE L1 4054 5586 -297 5 1110 8910 3 8 0 chr4 68842541 68843529 -86786591 + L1Md_A LINE L1 5587 6582 0 5 1110 475 306 54 42 chr4 68843642 68843976 -86786144 + L1_Mur3 LINE L1 192 529 -7199 5 1110 982 229 47 0 chr4 68844005 68844324 -86785796 + L1_Mur3 LINE L1 888 1221 -6507 5 1110 3386 222 41 36 chr4 68844309 68844738 -86785382 + L1_Mur3 LINE L1 1153 1571 -4309 5 1110 243 0 0 0 chr4 68844738 68844765 -86785355 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1110 3386 229 34 63 chr4 68844765 68845665 -86784455 + L1_Mur3 LINE L1 1572 2451 -3429 5 1110 6508 167 87 20 chr4 68845676 68845968 -86784152 + Lx2B LINE L1 4365 4632 -1254 5 1110 291 28 0 0 chr4 68845968 68846004 -86784116 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1110 7478 153 60 14 chr4 68846004 68848204 -86781916 + Lx2B LINE L1 4633 6994 -6 5 1110 3418 176 42 46 chr4 68848200 68849063 -86781057 + L1_Mur3 LINE L1 3742 4600 -1280 5 1110 8228 133 27 5 chr4 68849053 68850661 -86779459 + Lx2 LINE L1 5352 6996 -1 5 1110 1643 283 28 7 chr4 68850656 68851115 -86779005 + Lx6 LINE L1 6980 7448 -12 5 1110 585 298 85 141 chr4 68851115 68851296 -86778824 - MTEb LTR MaLR -53 326 171 5 1110 3891 100 11 2 chr4 68851296 68851856 -86778264 - L1_Mus4 LINE L1 -7 6629 6065 5 1110 585 298 85 141 chr4 68851856 68852014 -86778106 - MTEb LTR MaLR -209 170 6 5 1110 25 31 0 0 chr4 68852014 68852046 -86778074 + AT_rich Low_complexity Low_complexity 1 32 0 5 1110 654 359 51 36 chr4 68852506 68852862 -86777258 - MTE-int LTR MaLR -459 1121 761 5 1110 1533 191 115 14 chr4 68852910 68853388 -86776732 + RMER4B LTR ERVK 17 574 -11 5 1110 1604 239 81 11 chr4 68853402 68853872 -86776248 + MurERV4-int LTR ERVK 42 544 -4716 5 1110 1500 194 9 3 chr4 68853935 68854250 -86775870 + MurERV4-int LTR ERVK 4944 5260 0 5 1110 2106 229 112 4 chr4 68854263 68854772 -86775348 + RMER4B LTR ERVK 22 585 0 5 1110 259 333 134 7 chr4 68855174 68855316 -86774804 + L3 LINE CR1 4329 4488 -1 5 1110 434 346 92 30 chr4 68855535 68855970 -86774150 - Lx8 LINE L1 -1 7472 7011 5 1110 728 88 0 9 chr4 68856424 68856539 -86773581 + (GGA)n Simple_repeat Simple_repeat 1 114 0 5 1110 375 23 0 0 chr4 68857322 68857366 -86772754 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 5 1110 319 233 167 48 chr4 68857425 68857551 -86772569 + MIRc SINE MIR 30 170 -98 5 1110 304 325 122 43 chr4 68857904 68858158 -86771962 - L1M4 LINE L1 -384 5800 5527 5 1110 294 322 48 9 chr4 68858225 68858435 -86771685 - L1M4 LINE L1 -653 5471 5254 5 1110 191 338 0 81 chr4 68858726 68858813 -86771307 + L2c LINE L2 3273 3352 -35 5 1110 199 275 0 68 chr4 68859132 68859206 -86770914 + L2 LINE L2 2772 2840 -579 5 1110 701 324 31 73 chr4 68859677 68860197 -86769923 + Lx9 LINE L1 6820 7458 -186 5 1110 444 19 0 0 chr4 68860197 68860250 -86769870 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1110 546 350 55 46 chr4 68860250 68860344 -86769776 + Lx9 LINE L1 7333 7438 -35 5 1110 226 318 109 0 chr4 68860429 68860541 -86769579 - MIRc SINE MIR -100 168 49 5 1110 226 271 0 45 chr4 68861573 68861685 -86768435 + CT-rich Low_complexity Low_complexity 3 109 0 5 1110 435 83 0 0 chr4 68861888 68861948 -86768172 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1110 369 236 76 7 chr4 68865013 68865158 -86764962 - Lx3C LINE L1 -2 6974 6820 5 1110 843 202 27 0 chr4 68865134 68865317 -86764803 - Lx3C LINE L1 -310 6666 6479 5 1110 35 24 0 0 chr4 68865337 68865379 -86764741 + AT_rich Low_complexity Low_complexity 1 42 0 5 1110 1239 237 31 22 chr4 68866683 68867002 -86763118 - MER96B DNA hAT 0 417 96 5 1110 28 0 0 0 chr4 68867009 68867037 -86763083 + AT_rich Low_complexity Low_complexity 1 28 0 5 1110 29637 96 5 9 chr4 68867145 68872324 -86757796 + L1Md_F2 LINE L1 217 5586 -297 5 1110 7560 73 1 0 chr4 68872325 68873306 -86756814 + L1Md_F2 LINE L1 5588 6569 -13 5 1110 844 127 0 20 chr4 68873303 68873456 -86756664 + L1Md_F2 LINE L1 6433 6582 0 5 1110 2830 42 17 50 chr4 68873569 68873972 -86756148 - RLTR10 LTR ERVK 0 390 1 5 1110 22 0 0 0 chr4 68874026 68874048 -86756072 + AT_rich Low_complexity Low_complexity 1 22 0 5 1110 252 100 0 0 chr4 68874472 68874512 -86755608 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 1110 305 309 43 32 chr4 68874535 68874722 -86755398 - MER53 DNA hAT -1 192 4 5 1110 513 328 24 34 chr4 68874779 68875193 -86754927 - Lx9 LINE L1 -27 7617 7208 5 1110 529 302 43 28 chr4 68875431 68875642 -86754478 - B3 SINE B2 0 216 3 5 1110 2128 85 66 3 chr4 68876923 68877241 -86752879 + ORR1A1 LTR MaLR 1 338 -8 5 1110 797 105 0 70 chr4 68877384 68877527 -86752593 + MusHAL1 LINE L1 2220 2352 -360 5 1110 33799 46 0 3 chr4 68877528 68882965 -86747155 + L1Md_T LINE L1 74 5589 -297 5 1110 8202 40 1 9 chr4 68882965 68883969 -86746151 + L1Md_T LINE L1 5590 6585 0 5 1110 13989 82 2 1 chr4 68883971 68885979 -86744141 + L1_Mm LINE L1 3533 5542 -341 5 1110 501 232 22 49 chr4 68886153 68886419 -86743701 - Lx9 LINE L1 -3 7641 7341 5 1110 576 309 89 6 chr4 68886744 68887105 -86743015 + L1MA4 LINE L1 5438 5828 -472 5 1110 1013 318 89 20 chr4 68887114 68887654 -86742466 + Lx8 LINE L1 6895 7471 -2 5 1110 239 160 80 0 chr4 68887683 68887733 -86742387 + L1MA4 LINE L1 5855 5908 -392 5 1110 21 0 0 0 chr4 68887763 68887784 -86742336 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 29 78 0 0 chr4 68887972 68888036 -86742084 + AT_rich Low_complexity Low_complexity 1 64 0 5 1110 3603 251 45 48 chr4 68888036 68888735 -86741385 + Lx6 LINE L1 6457 7144 -316 5 1110 1486 6 0 0 chr4 68888735 68888908 -86741212 - L1Md_A LINE L1 0 6582 6410 5 1110 3603 251 45 48 chr4 68888908 68889211 -86740909 + Lx6 LINE L1 7145 7456 -4 5 1110 1399 33 0 16 chr4 68889408 68889591 -86740529 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1110 204 167 0 23 chr4 68889591 68889628 -86740492 + CT-rich Low_complexity Low_complexity 4 40 0 5 1110 8122 46 1 1 chr4 68889811 68890907 -86739213 - L1Md_F2 LINE L1 -1 6581 5487 5 1110 9543 119 25 2 chr4 68891881 68893834 -86736286 - L1_Mus3 LINE L1 -6 6632 4637 5 1110 180 0 0 0 chr4 68893834 68893854 -86736266 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1110 9543 149 16 0 chr4 68893854 68894203 -86735917 - L1_Mus3 LINE L1 -1247 4636 4275 5 1110 32730 86 15 2 chr4 68894215 68900117 -86730003 - L1Md_F2 LINE L1 -10 6572 593 5 1110 15983 149 33 8 chr4 68900135 68901703 -86728417 - L1_Mus3 LINE L1 -1644 4239 2613 5 1110 441 0 0 0 chr4 68901703 68901752 -86728368 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1110 15983 165 28 10 chr4 68901752 68903977 -86726143 - L1_Mus3 LINE L1 -3271 2612 364 5 1110 202 223 11 62 chr4 68907172 68907239 -86722881 - MIR SINE MIR -89 179 114 5 1110 739 226 94 5 chr4 68910546 68910737 -86719383 - B3 SINE B2 -5 211 4 5 1110 326 279 0 39 chr4 68911319 68911472 -86718648 + GA-rich Low_complexity Low_complexity 4 150 0 5 1110 22 35 0 0 chr4 68911856 68911885 -86718235 + AT_rich Low_complexity Low_complexity 1 29 0 5 1110 647 285 68 15 chr4 68912181 68912495 -86717625 - L1MC4 LINE L1 -4497 1814 1524 5 1110 280 169 138 0 chr4 68912629 68912694 -86717426 + U2 snRNA snRNA 1 74 -114 5 1110 490 270 11 68 chr4 68912879 68913070 -86717050 + B3A SINE B2 2 181 -17 5 1110 638 276 53 57 chr4 68914068 68914314 -86715806 - Kanga2_a DNA Tc2 -528 360 116 5 1110 993 53 0 0 chr4 68915053 68915185 -86714935 + (TC)n Simple_repeat Simple_repeat 1 132 0 5 1110 315 0 0 0 chr4 68915185 68915219 -86714901 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1110 508 316 61 17 chr4 68915529 68915709 -86714411 + MLT2B1 LTR ERVL 1 188 -332 5 1110 247 355 113 7 chr4 68915777 68915919 -86714201 + MLT2B1 LTR ERVL 324 480 -87 5 1110 240 300 0 29 chr4 68916459 68916473 -86713647 + polypurine Low_complexity Low_complexity 4 17 0 5 1110 351 44 0 0 chr4 68916473 68916518 -86713602 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1110 240 300 0 29 chr4 68916518 68916606 -86713514 + GA-rich Low_complexity Low_complexity 18 103 0 5 1110 258 229 0 28 chr4 68916519 68916591 -86713529 + (CAGAGA)n Simple_repeat Simple_repeat 1 70 0 5 1110 186 271 256 12 chr4 68916791 68916877 -86713243 - MIRb SINE MIR -81 187 81 5 1110 309 164 0 0 chr4 68917119 68917192 -86712928 + GA-rich Low_complexity Low_complexity 2 74 0 5 1110 579 15 0 0 chr4 68917923 68917991 -86712129 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1110 691 281 148 19 chr4 68918131 68918497 -86711623 + MTD LTR MaLR 5 417 -2 5 1110 481 333 0 0 chr4 68918823 68918955 -86711165 - Lx8 LINE L1 -310 7163 7032 5 1110 277 230 65 65 chr4 68919178 68919271 -86710849 - Charlie4a DNA MER1_type -5 503 411 5 1110 306 295 119 94 chr4 68919282 68919634 -86710486 - LTR37A LTR ERV1 -11 415 55 5 1110 1671 124 25 7 chr4 68919730 68920006 -86710114 + Lx LINE L1 6372 6652 -2 5 1110 523 323 6 6 chr4 68920064 68920232 -86709888 + MER2 DNA MER2_type 111 278 -67 5 1110 549 262 137 74 chr4 68921221 68921345 -86708775 + MLT1C LTR MaLR 6 143 -324 5 1110 853 280 111 12 chr4 68921345 68921670 -86708450 + ORR1E LTR MaLR 3 359 0 5 1110 549 262 137 74 chr4 68921670 68921829 -86708291 + MLT1C LTR MaLR 144 307 -160 5 1110 241 247 37 0 chr4 68923032 68923113 -86707007 + (TTA)n Simple_repeat Simple_repeat 3 86 0 5 1110 346 382 90 0 chr4 68924445 68924623 -86705497 + MLT1H1 LTR MaLR 3 196 -359 5 1110 384 109 16 0 chr4 68924652 68924716 -86705404 + L1_Mus2 LINE L1 6502 6566 0 5 1110 25 65 0 0 chr4 68924716 68924762 -86705358 + AT_rich Low_complexity Low_complexity 1 46 0 5 1110 270 293 53 13 chr4 68925069 68925145 -86704975 - MIR SINE MIR -167 95 17 5 1110 333 0 0 0 chr4 68925634 68925671 -86704449 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1110 555 308 0 0 chr4 68925727 68925860 -86704260 - RSINE1 SINE B4 -29 136 4 5 1110 219 335 76 32 chr4 68926296 68926481 -86703639 - MIRb SINE MIR -17 251 59 5 1110 286 339 47 0 chr4 68926789 68926916 -86703204 - MIRc SINE MIR -119 149 17 5 1110 754 330 9 0 chr4 68927790 68928005 -86702115 + Lx8 LINE L1 7041 7257 -216 5 1110 269 330 0 21 chr4 68928252 68928345 -86701775 - MLT1C LTR MaLR -2 465 375 5 1110 398 276 50 25 chr4 68928526 68928686 -86701434 - MLT1C LTR MaLR -281 186 23 5 1110 273 162 0 0 chr4 68929520 68929588 -86700532 + A-rich Low_complexity Low_complexity 1 68 0 5 1110 357 24 0 0 chr4 68929611 68929653 -86700467 + (TTG)n Simple_repeat Simple_repeat 1 42 0 5 1110 380 378 72 0 chr4 68930403 68930583 -86699537 - MIR SINE MIR -63 199 7 5 1110 199 0 0 61 chr4 68930643 68930676 -86699444 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1110 1697 47 0 0 chr4 68931685 68931896 -86698224 + L1Md_T LINE L1 6372 6582 0 5 1110 324 335 45 45 chr4 68933157 68933335 -86696785 + MLT1C LTR MaLR 290 467 0 6 1110 250 297 106 94 chr4 68934086 68934246 -86695874 + MLT1A0 LTR MaLR 204 365 0 6 1110 3355 33 2 0 chr4 68934270 68934665 -86695455 - MTA_Mm LTR MaLR 0 396 1 6 1110 232 333 93 23 chr4 68934749 68934878 -86695242 - MIR SINE MIR -13 249 112 6 1110 430 230 8 42 chr4 68935353 68935471 -86694649 + L1MB8 LINE L1 6064 6177 -1 6 1110 515 329 19 12 chr4 68935685 68935845 -86694275 + RSINE1 SINE B4 5 165 0 6 1110 930 230 193 29 chr4 68935866 68936281 -86693839 + Lx4B LINE L1 6544 7026 -32 6 1110 388 222 0 61 chr4 68936281 68936444 -86693676 + G-rich Low_complexity Low_complexity 2 154 0 6 1110 40 59 0 0 chr4 68936502 68936570 -86693550 + AT_rich Low_complexity Low_complexity 1 68 0 6 1110 2345 104 5 78 chr4 68936917 68937304 -86692816 + RLTR10D LTR ERVK 1 359 0 6 1110 1047 232 21 25 chr4 68937361 68937604 -86692516 + MTD LTR MaLR 164 405 -14 6 1110 289 349 97 56 chr4 68937616 68937883 -86692237 + ORR1E LTR MaLR 47 324 -35 6 1110 188 315 92 9 chr4 68938032 68938141 -86691979 + MIRm SINE MIR 63 180 -96 6 1110 1329 61 0 0 chr4 68938647 68938827 -86691293 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1110 1659 252 36 28 chr4 68939238 68939708 -86690412 - RLTR16 LTR ERVK -31 474 1 6 1110 182 240 20 20 chr4 68940055 68940106 -86690014 - L2b LINE L2 -219 3156 3106 6 1110 3923 32 2 0 chr4 68940620 68941084 -86689036 + L1Md_F2 LINE L1 6117 6581 -1 6 1110 692 22 22 0 chr4 68941948 68942037 -86688083 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 6 1110 4860 159 35 4 chr4 68942109 68943022 -86687098 - L1_Mur2 LINE L1 -1683 4194 3254 6 138 33880 11 2 1 chr4 68943017 68947626 -86682494 - L1Md_A LINE L1 -1 6581 1968 6 1111 6223 141 42 2 chr4 68947626 68948666 -86681454 + Lx2 LINE L1 5915 6996 -1 6 1111 253 327 84 70 chr4 68948892 68949165 -86680955 - B4 SINE B4 -14 278 2 6 1111 1567 285 11 13 chr4 68949174 68949701 -86680419 - L1ME1 LINE L1 -15 6164 5639 6 1111 1638 16 11 0 chr4 68949978 68950168 -86679952 - B2_Mm1a SINE B2 -1 192 1 6 1111 752 289 29 0 chr4 68950274 68950482 -86679638 - B3 SINE B2 0 216 3 6 1111 735 161 21 0 chr4 68950516 68950659 -86679461 - URR1A DNA MER1_type 0 226 81 6 1111 29 28 0 0 chr4 68951121 68951157 -86678963 + AT_rich Low_complexity Low_complexity 1 36 0 6 1111 234 0 0 0 chr4 68951242 68951268 -86678852 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1111 567 88 0 0 chr4 68951268 68951359 -86678761 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1111 441 0 0 0 chr4 68951963 68952012 -86678108 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1111 465 19 0 0 chr4 68952114 68952168 -86677952 + (TTA)n Simple_repeat Simple_repeat 2 55 0 6 1111 900 63 63 0 chr4 68952168 68952295 -86677825 - B1_Mus1 SINE Alu -12 136 2 6 1111 990 87 0 0 chr4 68952869 68953007 -86677113 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 6 1111 2779 168 109 56 chr4 68953008 68953634 -86676486 - Lx2B LINE L1 -10 6990 6332 6 1111 5514 111 15 2 chr4 68953630 68954154 -86675966 - L1_Mur1 LINE L1 -87 5799 5267 6 1111 306 0 0 0 chr4 68954154 68954188 -86675932 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1111 5514 111 15 2 chr4 68954188 68954486 -86675634 - L1_Mur1 LINE L1 -620 5266 4968 6 1111 6508 138 59 11 chr4 68954487 68954605 -86675515 + Lx3A LINE L1 5789 5906 -1075 6 1111 354 45 0 0 chr4 68954605 68954649 -86675471 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 6 1111 6508 138 59 11 chr4 68954649 68955669 -86674451 + Lx3A LINE L1 5907 6981 0 6 1111 989 182 23 6 chr4 68955674 68955851 -86674269 - Lx2A1 LINE L1 -664 6344 6165 6 1111 564 42 0 0 chr4 68956395 68956466 -86673654 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1111 2777 285 54 62 chr4 68956511 68957991 -86672129 + L1_Rod LINE L1 2681 4174 -1673 6 1111 915 107 46 0 chr4 68957991 68958122 -86671998 - B1_Mus1 SINE Alu -11 137 1 6 1111 2777 285 54 62 chr4 68958122 68958431 -86671689 + L1_Rod LINE L1 4175 4456 -1391 6 1111 1261 193 126 36 chr4 68958407 68958740 -86671380 + Lx2B LINE L1 6638 7000 0 6 1111 450 292 11 33 chr4 68958731 68958980 -86671140 + L1_Rod LINE L1 4495 4736 -1404 6 1111 1576 37 0 16 chr4 68958999 68959192 -86670928 - B2_Mm1a SINE B2 -2 191 2 6 1111 993 104 0 0 chr4 68959836 68959970 -86670150 + B1_Mus1 SINE Alu 2 135 -13 6 1111 210 37 0 0 chr4 68959973 68960000 -86670120 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1111 24 0 0 0 chr4 68960525 68960549 -86669571 + AT_rich Low_complexity Low_complexity 1 24 0 6 1111 231 271 0 33 chr4 68960840 68960901 -86669219 + MIRb SINE MIR 207 265 -3 6 1111 255 79 0 0 chr4 68961425 68961463 -86668657 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1111 216 67 0 0 chr4 68961747 68961777 -86668343 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1111 449 345 17 73 chr4 68961777 68961955 -86668165 - B4 SINE B4 -108 184 17 6 1111 243 264 0 19 chr4 68961907 68961961 -86668159 - ID2 SINE ID -20 63 11 6 1111 192 40 0 0 chr4 68962117 68962142 -86667978 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 6 1111 191 344 38 60 chr4 68962316 68962449 -86667671 - L2c LINE L2 -16 3371 3242 6 1111 180 291 116 18 chr4 68963451 68963563 -86666557 + L2 LINE L2 2064 2186 -1233 6 1111 196 387 86 20 chr4 68963811 68964009 -86666111 + L2 LINE L2 2731 2941 -478 6 1111 698 255 75 21 chr4 68964074 68964314 -86665806 - MLT1F LTR MaLR -9 539 287 6 1111 5966 108 28 15 chr4 68964434 68965348 -86664772 - Lx3_Mus LINE L1 -8 7001 6076 6 1111 348 64 0 0 chr4 68965833 68965880 -86664240 + (CTA)n Simple_repeat Simple_repeat 1 47 0 6 1111 642 68 0 0 chr4 68966450 68966538 -86663582 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1111 357 268 98 56 chr4 68966671 68966956 -86663164 + L1MA9 LINE L1 5999 6295 -17 6 1111 313 322 46 36 chr4 68967506 68967725 -86662395 + L1MC LINE L1 3704 3924 -2222 6 1111 440 157 22 0 chr4 68967939 68968028 -86662092 + (CATA)n Simple_repeat Simple_repeat 2 92 0 6 1111 258 396 21 25 chr4 68969297 68969373 -86660747 - MurSatRep1 Unknown Unknown -110 2027 1955 6 1111 375 23 0 0 chr4 68969373 68969417 -86660703 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1111 258 396 21 25 chr4 68969417 68969622 -86660498 - MurSatRep1 Unknown Unknown -183 1954 1747 6 1111 5717 86 15 3 chr4 68970093 68971118 -86659002 - L1_Mus2 LINE L1 -195 6371 5340 6 1111 22103 35 1 11 chr4 68971093 68974582 -86655538 + L1Md_T LINE L1 441 3888 -1995 6 1111 2702 29 0 0 chr4 68974582 68974896 -86655224 + L1Md_T LINE L1 5273 5586 -297 6 1111 8246 42 0 0 chr4 68974896 68975892 -86654228 + L1Md_T LINE L1 5587 6582 0 6 1111 617 127 4 4 chr4 68975911 68976028 -86654092 - L1_Mus2 LINE L1 -507 5376 5255 6 1111 446 64 39 0 chr4 68976050 68976128 -86653992 + Lx2 LINE L1 6916 6996 -1 6 1111 690 262 131 12 chr4 68976143 68976402 -86653718 + L1MA4 LINE L1 5673 5962 -338 6 1111 25 31 0 0 chr4 68976584 68976616 -86653504 + AT_rich Low_complexity Low_complexity 1 32 0 6 1111 226 344 157 23 chr4 68976657 68976874 -86653246 + MIRb SINE MIR 23 268 0 6 1111 451 348 34 53 chr4 68978444 68978653 -86651467 + Tigger5 DNA MER2_type 2 206 -2200 6 1111 3017 246 76 33 chr4 68978741 68979532 -86650588 - Lx5 LINE L1 -1 7049 6225 6 1111 1259 231 16 13 chr4 68979530 68979842 -86650278 + Lx5 LINE L1 5800 6112 -938 6 1111 5339 170 72 16 chr4 68979837 68980179 -86649941 - L1_Mur2 LINE L1 -77 5800 5444 6 1111 311 0 0 25 chr4 68980179 68980219 -86649901 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1111 5339 170 72 16 chr4 68980219 68981024 -86649096 - L1_Mur2 LINE L1 -434 5443 4589 6 1111 1473 194 87 84 chr4 68981282 68981709 -86648411 - RLTR25B LTR ERVK 0 1028 601 6 1111 1250 193 142 7 chr4 68981714 68981996 -86648124 - Lx2B LINE L1 -309 6691 6372 6 1111 4205 157 35 1 chr4 68981984 68982717 -86647403 + Lx2B LINE L1 5608 6365 -635 6 1111 3074 200 59 30 chr4 68982717 68983357 -86646763 - RLTR25A LTR ERVK -444 659 1 6 1111 2570 68 6 0 chr4 68983492 68983866 -86646254 - L1_Mus1 LINE L1 0 6567 6224 6 1111 336 363 32 0 chr4 68984415 68984539 -86645581 - MER89 LTR ERV1 0 559 432 6 1111 364 288 27 0 chr4 68985280 68985391 -86644729 + Lx6 LINE L1 6781 6894 -566 6 1111 357 62 0 0 chr4 68985391 68985439 -86644681 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1111 1176 244 34 3 chr4 68985442 68985738 -86644382 + Lx6 LINE L1 6842 7146 -314 6 1111 874 256 5 5 chr4 68985747 68985951 -86644169 + Lx6 LINE L1 7252 7455 -5 6 1111 228 35 0 0 chr4 68986606 68986635 -86643485 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1111 3824 291 60 19 chr4 68986913 68988220 -86641900 + Lx7 LINE L1 6051 7411 -285 6 1111 420 20 0 0 chr4 68988234 68988283 -86641837 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1111 246 62 0 0 chr4 68988283 68988314 -86641806 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1111 21 0 0 0 chr4 68988481 68988502 -86641618 + AT_rich Low_complexity Low_complexity 1 21 0 6 1111 499 275 95 15 chr4 68989525 68989809 -86640311 + Lx8 LINE L1 5596 5908 -1788 6 1111 1383 302 93 18 chr4 68990027 68990641 -86639479 - Lx8 LINE L1 -10 7463 6804 6 1111 206 62 31 0 chr4 68990702 68990734 -86639386 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1111 245 333 22 11 chr4 68990738 68990829 -86639291 - Lx8 LINE L1 -723 6750 6659 6 1111 1754 88 40 4 chr4 68990832 68991084 -86639036 - L1_Mus1 LINE L1 0 6567 6307 6 1111 423 0 0 0 chr4 68991091 68991138 -86638982 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 6 1111 459 295 40 30 chr4 68991138 68991337 -86638783 - Lx8 LINE L1 -1144 6329 6129 6 1111 185 94 31 0 chr4 68991668 68991700 -86638420 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1111 630 259 7 0 chr4 68991710 68991853 -86638267 - Lx8 LINE L1 -729 6744 6601 6 1111 305 335 115 56 chr4 68991915 68992184 -86637936 + L3 LINE CR1 4164 4448 -41 6 1111 338 305 95 0 chr4 68992719 68992814 -86637306 - PB1D10 SINE Alu -5 112 9 6 1111 687 258 10 15 chr4 68993430 68993603 -86636517 - B3 SINE B2 -26 169 1 6 1111 22 35 0 0 chr4 68993603 68993632 -86636488 + AT_rich Low_complexity Low_complexity 1 29 0 6 1111 29 84 0 0 chr4 68993810 68993881 -86636239 + AT_rich Low_complexity Low_complexity 1 71 0 6 1111 267 225 0 0 chr4 68993891 68993962 -86636158 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 6 1111 273 351 138 21 chr4 68994589 68994778 -86635342 + MLT1H LTR MaLR 1 211 -338 7 1111 928 92 8 8 chr4 68995466 68995597 -86634523 - L1_Mus2 LINE L1 -128 6438 6308 7 1111 730 127 0 0 chr4 68995597 68995715 -86634405 + L1_Mus2 LINE L1 6449 6566 0 7 1111 1820 275 18 18 chr4 68995855 68996303 -86633817 + Lx5 LINE L1 6596 7043 -7 7 1111 1124 173 22 9 chr4 68996567 68996795 -86633325 + Lx LINE L1 6419 6649 -5 7 1111 1109 82 0 7 chr4 68996948 68997095 -86633025 - B1_Mus1 SINE Alu -2 146 1 7 1111 217 337 36 12 chr4 68997178 68997262 -86632858 - MIR3 SINE MIR -29 179 94 7 1111 637 310 0 19 chr4 68997909 68998067 -86632053 + RSINE1 SINE B4 11 165 0 7 1111 321 309 78 67 chr4 68998067 68998089 -86632031 + B3A SINE B2 10 191 -7 7 1111 4827 189 65 16 chr4 68998300 68998399 -86631721 - Lx3C LINE L1 -2 6974 6854 7 1111 186 43 0 0 chr4 68998399 68998422 -86631698 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 7 1111 4827 189 65 16 chr4 68998422 68999330 -86630790 - Lx3C LINE L1 -123 6853 5918 7 1111 3763 165 22 6 chr4 68999328 69000000 -86630120 + L1_Mur1 LINE L1 4886 5568 -318 7 1111 1792 146 34 31 chr4 69000021 69000347 -86629773 + Lx3C LINE L1 5587 5913 -1063 1 1111 260 285 285 0 chr4 69001011 69001134 -86628986 - MIR3 SINE MIR -2 206 49 2 1111 217 193 32 95 chr4 69002230 69002293 -86627827 + B3A SINE B2 1 59 -139 3 1111 405 102 0 0 chr4 69002331 69002390 -86627730 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1111 387 0 0 0 chr4 69002411 69002454 -86627666 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1111 768 266 10 24 chr4 69002695 69002903 -86627217 - B3 SINE B2 -6 210 6 6 1111 7114 125 10 4 chr4 69003180 69004829 -86625291 + L1_Mus3 LINE L1 4953 6618 -20 7 1111 906 138 0 0 chr4 69004803 69004941 -86625179 + L1Md_F2 LINE L1 5949 6086 -496 8 1111 29 60 0 0 chr4 69004954 69005004 -86625116 + AT_rich Low_complexity Low_complexity 1 50 0 9 1111 468 0 0 0 chr4 69005605 69005657 -86624463 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1111 369 0 0 0 chr4 69005657 69005697 -86624423 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1111 755 302 137 53 chr4 69005850 69006192 -86623928 + MTEa LTR MaLR 9 379 0 1 1111 24 0 0 0 chr4 69006561 69006585 -86623535 + AT_rich Low_complexity Low_complexity 1 24 0 1 1111 277 350 40 0 chr4 69006588 69006688 -86623432 - MTEa LTR MaLR -71 308 205 1 1111 356 321 36 29 chr4 69006861 69006999 -86623121 - B1F SINE Alu 0 149 11 1 1111 236 322 34 0 chr4 69006946 69007005 -86623115 - B4A SINE B4 -147 145 85 1 1111 290 309 102 0 chr4 69008072 69008214 -86621906 - L2c LINE L2 0 3387 3210 1 1111 368 266 103 43 chr4 69008923 69009053 -86621067 + B1F1 SINE Alu 9 149 0 1 1111 581 228 57 0 chr4 69009220 69009343 -86620777 + B1_Mur2 SINE Alu 15 144 -5 1 1111 421 306 0 61 chr4 69009367 69009482 -86620638 + B1_Mur1 SINE Alu 13 120 -29 2 1111 516 122 0 0 chr4 69009482 69009564 -86620556 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1111 212 312 72 10 chr4 69010324 69010421 -86619699 - MIRc SINE MIR -15 253 151 2 1111 241 342 59 26 chr4 69011641 69011794 -86618326 - L2a LINE L2 -2 3424 3267 2 1111 5224 114 20 1 chr4 69012530 69013323 -86616797 + Lx3_Mus LINE L1 6202 7009 0 2 1111 203 250 0 0 chr4 69013623 69013679 -86616441 + GA-rich Low_complexity Low_complexity 4 59 0 2 1111 3316 43 5 0 chr4 69014055 69014449 -86615671 - MTA_Mm LTR MaLR 0 396 1 2 1111 183 366 119 24 chr4 69014549 69014717 -86615403 - L2 LINE L2 -2454 965 782 2 1111 424 223 223 0 chr4 69014737 69014876 -86615244 - ORR1C2 LTR MaLR -157 227 52 2 1111 21 0 0 0 chr4 69014952 69014973 -86615147 + AT_rich Low_complexity Low_complexity 1 21 0 2 1111 192 291 0 18 chr4 69015728 69015784 -86614336 + L3 LINE CR1 1672 1726 -2763 3 1111 220 400 20 54 chr4 69018127 69018275 -86611845 + L2c LINE L2 3060 3202 -185 3 1111 23 33 0 0 chr4 69018410 69018440 -86611680 + AT_rich Low_complexity Low_complexity 1 30 0 3 1111 382 291 17 44 chr4 69018461 69018641 -86611479 + (CATA)n Simple_repeat Simple_repeat 3 177 0 3 1111 518 43 14 0 chr4 69020291 69020360 -86609760 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 3 1111 1283 73 32 8 chr4 69020544 69020793 -86609327 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 3 1111 323 162 0 12 chr4 69020796 69020877 -86609243 + (CAGA)n Simple_repeat Simple_repeat 2 81 0 3 1111 870 78 92 15 chr4 69022897 69023027 -86607093 + B1_Mur4 SINE Alu 1 140 -10 3 1111 570 335 75 28 chr4 69023445 69023700 -86606420 - B4A SINE B4 -24 268 2 3 1111 192 77 0 0 chr4 69024380 69024406 -86605714 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1111 33810 65 1 5 chr4 69024426 69029610 -86600510 - L1Md_F2 LINE L1 -12 6570 1408 4 1111 40535 12 1 6 chr4 69029610 69035431 -86594689 - L1Md_A LINE L1 0 6582 800 4 1111 7477 113 10 19 chr4 69035409 69036670 -86593450 - L1Md_F2 LINE L1 -4476 1407 153 4 1111 200 302 22 34 chr4 69036860 69036949 -86593171 - L2a LINE L2 -2 3424 3337 4 1111 354 353 59 0 chr4 69037431 69037584 -86592536 - MER5A DNA MER1_type -14 175 14 4 1111 196 237 33 33 chr4 69037730 69037791 -86592329 + L2 LINE L2 2493 2553 -866 4 1111 23 54 0 0 chr4 69037892 69037929 -86592191 + AT_rich Low_complexity Low_complexity 1 37 0 4 1111 236 399 80 36 chr4 69037933 69038071 -86592049 - RSINE1 SINE B4 -15 150 7 4 1111 530 291 129 30 chr4 69038667 69039039 -86591081 - L1MA4 LINE L1 -379 5921 5513 4 1111 195 69 0 0 chr4 69041520 69041549 -86588571 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1111 192 237 184 10 chr4 69042416 69042514 -86587606 - L2c LINE L2 -58 3329 3215 4 1111 653 275 176 32 chr4 69043907 69044219 -86585901 - ORR1E LTR MaLR 0 359 3 5 1111 227 186 33 33 chr4 69044493 69044554 -86585566 - L3b LINE CR1 -261 221 161 5 1111 219 253 159 11 chr4 69044819 69044907 -86585213 - MIRc SINE MIR -39 229 129 5 1111 586 197 14 0 chr4 69045069 69045211 -86584909 + (TA)n Simple_repeat Simple_repeat 2 145 0 5 1111 480 114 0 22 chr4 69046168 69046258 -86583862 - L1Md_F2 LINE L1 -12 6570 6483 5 1111 2484 45 3 6 chr4 69046308 69046623 -86583497 - L1Md_F2 LINE L1 -13 6569 6256 5 1111 459 0 0 0 chr4 69046899 69046950 -86583170 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1111 411 38 0 0 chr4 69046950 69047002 -86583118 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1111 207 146 0 0 chr4 69047002 69047043 -86583077 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1111 887 154 55 6 chr4 69047101 69047264 -86582856 - Lx2B LINE L1 -436 6564 6394 5 1111 2373 169 5 26 chr4 69047266 69047692 -86582428 + Lx2A1 LINE L1 6591 7007 -1 6 1111 250 288 14 43 chr4 69047725 69047747 -86582373 + PB1D10 SINE Alu 22 42 -75 6 1111 2544 111 30 17 chr4 69047747 69048150 -86581970 + L1_Mus4 LINE L1 6227 6634 -2 6 1111 250 291 27 41 chr4 69048150 69048214 -86581906 + PB1D10 SINE Alu 43 110 -39 6 1111 1283 196 0 0 chr4 69048759 69048984 -86581136 - URR1A DNA MER1_type -1 225 1 6 1111 5000 71 3 0 chr4 69050212 69050860 -86579260 + L1_Mus1 LINE L1 5918 6567 0 6 1111 229 318 32 0 chr4 69051248 69051311 -86578809 + PB1D7 SINE Alu 36 100 -20 6 1111 1274 129 24 9 chr4 69051717 69051928 -86578192 + L1_Mus1 LINE L1 6354 6567 0 6 1111 352 264 35 0 chr4 69052038 69052125 -86577995 - Lx6 LINE L1 -110 7350 7261 6 1111 240 214 0 67 chr4 69052120 69052180 -86577940 - L1_Mur1 LINE L1 -354 5532 5477 6 1111 1147 87 52 6 chr4 69052150 69052324 -86577796 - L1_Mm LINE L1 -819 5064 4883 6 1111 2988 108 26 9 chr4 69052326 69052784 -86577336 + L1_Mus3 LINE L1 6169 6634 -4 7 1111 406 202 40 10 chr4 69052785 69052885 -86577235 - Lx6 LINE L1 -185 7275 7173 6 1111 1968 264 116 5 chr4 69053004 69053754 -86576366 + RCHARR1 DNA MER1_type 5 836 -138 7 1111 212 167 0 0 chr4 69053934 69053976 -86576144 + A-rich Low_complexity Low_complexity 1 42 0 7 1111 312 91 0 0 chr4 69054105 69054149 -86575971 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1111 427 397 32 18 chr4 69059088 69059365 -86570755 - B4A SINE B4 -11 281 1 7 1111 444 348 0 7 chr4 69059417 69059553 -86570567 - MER58B DNA MER1_type -5 336 202 7 1111 455 298 10 123 chr4 69059585 69059788 -86570332 - ORR1E LTR MaLR -118 241 62 7 1111 2138 211 37 14 chr4 69059793 69060401 -86569719 + MYSERV16_I-int LTR ERVK 1699 2251 -75 7 1111 2088 205 96 26 chr4 69060405 69060827 -86569293 + RLTR11A LTR ERVK 3 461 -67 7 1111 252 0 0 0 chr4 69060827 69060855 -86569265 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1111 2088 205 96 26 chr4 69060855 69060924 -86569196 + RLTR11A LTR ERVK 462 528 0 7 1111 252 0 0 0 chr4 69061295 69061323 -86568797 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 8 1111 720 0 0 0 chr4 69061584 69061664 -86568456 + (GAA)n Simple_repeat Simple_repeat 2 81 0 8 1111 11407 136 21 9 chr4 69061812 69064804 -86565316 + Lx3C LINE L1 3827 6855 -121 8 1111 369 0 0 0 chr4 69064804 69064845 -86565275 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1111 375 352 38 25 chr4 69064845 69064896 -86565224 + Lx3C LINE L1 6506 6556 -82 8 1111 732 232 0 0 chr4 69064896 69065073 -86565047 + GA-rich Low_complexity Low_complexity 3 179 0 8 1111 448 196 10 0 chr4 69065077 69065174 -86564946 + Lx3C LINE L1 6875 6972 -4 8 1111 387 0 0 0 chr4 69066089 69066132 -86563988 + (ATG)n Simple_repeat Simple_repeat 3 45 0 8 1111 202 328 0 16 chr4 69066132 69066194 -86563926 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1111 320 0 25 0 chr4 69066315 69066355 -86563765 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 1111 238 341 5 0 chr4 69066380 69066482 -86563638 + MIRm SINE MIR 71 173 -89 8 1111 267 320 23 24 chr4 69067153 69067276 -86562844 + MIRb SINE MIR 1 127 -149 9 1111 201 264 45 22 chr4 69067364 69067453 -86562667 - MIRb SINE MIR -66 202 112 9 1111 316 322 17 0 chr4 69067776 69067894 -86562226 - ORR1E LTR MaLR -239 120 1 9 1111 197 365 73 0 chr4 69068070 69068166 -86561954 - MIRb SINE MIR -146 122 20 9 1111 261 267 67 0 chr4 69068757 69068862 -86561258 + L1M4b LINE L1 3095 3206 -4128 9 1111 22 35 0 0 chr4 69069119 69069148 -86560972 + AT_rich Low_complexity Low_complexity 1 29 0 9 1111 275 314 18 37 chr4 69069320 69069429 -86560691 + PB1D10 SINE Alu 2 108 -9 9 1111 255 364 29 43 chr4 69070060 69070198 -86559922 + L2b LINE L2 3052 3187 -188 9 1111 4594 160 34 78 chr4 69071238 69072386 -86557734 + L1Md_F LINE L1 128 1205 -5519 9 138 21619 31 1 1 chr4 69072367 69075113 -86555007 + L1Md_T LINE L1 2711 5457 -426 9 1112 386 0 0 0 chr4 69075113 69075157 -86554963 + L1_Mm LINE L1 5543 5586 -297 9 1112 8049 54 0 0 chr4 69075157 69076151 -86553969 + L1Md_T LINE L1 5587 6580 -2 9 1112 31445 69 1 3 chr4 69076201 69081446 -86548674 + L1Md_F2 LINE L1 260 5588 -298 1 1112 8070 51 1 2 chr4 69081447 69082444 -86547676 + L1Md_F2 LINE L1 5590 6585 0 1 1112 442 356 54 21 chr4 69083033 69083274 -86546846 + MLT2F LTR ERVL 347 595 -68 1 1112 232 143 46 31 chr4 69084112 69084177 -86545943 + T-rich Low_complexity Low_complexity 4 69 0 1 1112 570 197 8 62 chr4 69084177 69084307 -86545813 + MTD LTR MaLR 20 142 -277 1 1112 483 87 0 0 chr4 69084320 69084389 -86545731 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1112 195 108 0 0 chr4 69084547 69084565 -86545555 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1112 1090 75 7 0 chr4 69084565 69084712 -86545408 - B1_Mus1 SINE Alu 0 148 1 1 1112 195 108 0 0 chr4 69084712 69084730 -86545390 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1112 23 0 0 0 chr4 69084845 69084868 -86545252 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 363 305 140 36 chr4 69085856 69086220 -86543900 + L1MA7 LINE L1 4318 4719 -1424 1 1112 322 320 23 15 chr4 69086229 69086359 -86543761 - MTEa LTR MaLR 0 379 249 1 1112 46 19 0 0 chr4 69086393 69086446 -86543674 + AT_rich Low_complexity Low_complexity 1 53 0 1 1112 26 50 0 0 chr4 69086483 69086523 -86543597 + AT_rich Low_complexity Low_complexity 1 40 0 1 1112 295 276 31 112 chr4 69086863 69086961 -86543159 - MTEa LTR MaLR -289 90 1 1 1112 1362 275 87 18 chr4 69086967 69087384 -86542736 + L1MA7 LINE L1 5384 5642 -649 1 1112 3356 68 0 5 chr4 69087384 69087814 -86542306 + L1Md_F2 LINE L1 6138 6565 -17 1 1112 1362 265 77 16 chr4 69087814 69088185 -86541935 + L1MA7 LINE L1 5643 6052 -248 1 1112 2217 82 0 0 chr4 69088185 69088479 -86541641 + L1_Mus1 LINE L1 6272 6565 -2 1 1112 1288 293 83 27 chr4 69088479 69088627 -86541493 + L1MA7 LINE L1 6053 6196 -104 1 1112 323 298 9 9 chr4 69088981 69089096 -86541024 + Ricksha_c DNA MuDR 1402 1516 -532 1 1112 26 0 0 0 chr4 69089107 69089133 -86540987 + AT_rich Low_complexity Low_complexity 1 26 0 1 1112 23 0 0 0 chr4 69089274 69089297 -86540823 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 336 217 35 24 chr4 69089507 69089592 -86540528 - Ricksha_0 DNA MuDR -1315 418 333 1 1112 1364 70 5 10 chr4 69089610 69089812 -86540308 - L1Md_F2 LINE L1 0 6582 6382 1 1112 771 38 0 0 chr4 69089820 69089926 -86540194 - L1Md_F2 LINE L1 0 6582 6477 1 1112 2826 124 19 11 chr4 69089927 69090568 -86539552 - L1Md_Gf LINE L1 -5932 590 1 1 1112 32584 55 5 12 chr4 69090545 69091713 -86538407 - L1Md_F2 LINE L1 -181 6401 5244 1 1112 567 0 0 0 chr4 69091713 69091776 -86538344 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1112 32584 84 4 5 chr4 69091776 69096755 -86533365 - L1Md_F2 LINE L1 -640 5243 271 1 1112 358 142 353 29 chr4 69096794 69096896 -86533224 - B2_Mm2 SINE B2 -14 181 47 1 1112 1058 136 19 0 chr4 69096938 69097100 -86533020 - B2_Mm1t SINE B2 -14 179 15 1 1112 1399 87 0 0 chr4 69097280 69097476 -86532644 - L1_Mur1 LINE L1 -293 5593 5398 1 1112 11942 146 144 64 chr4 69097474 69099806 -86530314 - Lx4A LINE L1 -18 7040 4631 1 1112 210 37 0 0 chr4 69099806 69099833 -86530287 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1112 11942 142 229 113 chr4 69099833 69100456 -86529664 - Lx4A LINE L1 -1247 4630 3237 1 1112 387 0 0 0 chr4 69100456 69100499 -86529621 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1112 513 0 0 0 chr4 69100499 69100555 -86529565 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1112 11942 142 229 113 chr4 69100555 69102021 -86528099 - Lx4A LINE L1 -2641 3236 1722 1 1112 4180 140 26 0 chr4 69102021 69102685 -86527435 - L1_Mus4 LINE L1 0 6636 5956 1 1112 11942 142 229 113 chr4 69102685 69102862 -86527258 - Lx4A LINE L1 -4156 1721 1712 1 1112 892 99 61 0 chr4 69102862 69102993 -86527127 - B1_Mus1 SINE Alu -6 142 4 1 1112 11942 161 177 69 chr4 69102993 69104218 -86525902 - Lx4A LINE L1 -4166 1711 609 1 1112 3568 13 2 0 chr4 69104218 69104613 -86525507 - MTA_Mm LTR MaLR 0 396 1 1 1112 3238 186 110 11 chr4 69104613 69104679 -86525441 - Lx4A LINE L1 -6478 608 542 1 1112 405 177 0 0 chr4 69104909 69104988 -86525132 + GA-rich Low_complexity Low_complexity 2 80 0 1 1112 185 0 0 39 chr4 69105735 69105761 -86524359 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1112 321 100 0 0 chr4 69105807 69105857 -86524263 + (CAA)n Simple_repeat Simple_repeat 1 50 0 1 1112 510 128 0 0 chr4 69105979 69106073 -86524047 + (TC)n Simple_repeat Simple_repeat 2 95 0 1 1112 762 280 11 11 chr4 69106971 69107155 -86522965 - B3 SINE B2 -32 184 1 1 1112 753 106 42 14 chr4 69107161 69107305 -86522815 - L1_Mus3 LINE L1 0 6638 6491 1 1112 25334 146 22 15 chr4 69107340 69111834 -86518286 + L1_Mus2 LINE L1 222 4731 -1152 1 1112 323 0 0 45 chr4 69111834 69111878 -86518242 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1112 14946 94 18 9 chr4 69111878 69113702 -86516418 + L1_Mus2 LINE L1 4732 6566 0 1 1112 25 0 0 0 chr4 69114514 69114539 -86515581 + AT_rich Low_complexity Low_complexity 1 25 0 1 1112 285 274 28 0 chr4 69114583 69114689 -86515431 + L1MA7 LINE L1 6178 6286 -5 1 1112 1361 56 6 0 chr4 69115735 69115914 -86514206 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1112 639 0 0 0 chr4 69115917 69115988 -86514132 + (GAGAA)n Simple_repeat Simple_repeat 1 71 0 1 1112 226 148 32 32 chr4 69115991 69116054 -86514066 + GA-rich Low_complexity Low_complexity 2 64 0 1 1112 226 311 74 55 chr4 69116123 69116279 -86513841 + MIRb SINE MIR 3 163 -113 1 1112 1139 75 0 0 chr4 69116670 69116817 -86513303 + B1_Mus2 SINE Alu 1 147 0 1 1112 334 357 24 52 chr4 69117188 69117398 -86512722 - MIR3 SINE MIR -1 207 4 1 1112 230 224 0 20 chr4 69118154 69118204 -86511916 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1112 217 214 97 97 chr4 69118679 69118772 -86511348 + MIRb SINE MIR 49 141 -127 1 1112 1854 194 16 6 chr4 69119655 69120018 -86510102 + ORR1B2 LTR MaLR 1 367 0 1 1112 228 286 85 22 chr4 69120601 69120712 -86509408 - MIRb SINE MIR -95 167 52 1 1112 184 400 0 0 chr4 69121136 69121196 -86508924 - MIR SINE MIR -119 89 30 1 1112 217 297 140 26 chr4 69121667 69121781 -86508339 + MIRb SINE MIR 66 192 -76 1 1112 279 375 37 16 chr4 69121803 69121990 -86508130 - MIR SINE MIR -4 258 68 1 1112 202 220 0 20 chr4 69122019 69122070 -86508050 + MIRm SINE MIR 215 264 -12 1 1112 897 131 85 0 chr4 69122375 69122551 -86507569 + L1_Mus3 LINE L1 6446 6636 -2 1 1112 890 144 12 0 chr4 69123133 69123293 -86506827 + GA-rich Low_complexity Low_complexity 4 165 0 1 1112 304 328 50 14 chr4 69123293 69123432 -86506688 - MIRb SINE MIR -7 261 118 1 1112 1957 182 62 24 chr4 69124282 69124603 -86505517 + ORR1B1 LTR MaLR 1 334 -60 1 1112 2362 53 0 13 chr4 69124603 69124908 -86505212 - L1Md_F2 LINE L1 -12 6570 6270 1 1112 1957 182 62 24 chr4 69124908 69124958 -86505162 + ORR1B1 LTR MaLR 335 385 -9 1 1112 1176 262 74 6 chr4 69125036 69125362 -86504758 + Lx2B LINE L1 6645 6992 -8 1 1112 265 225 58 14 chr4 69125534 69125633 -86504487 + MIRm SINE MIR 81 180 -28 1 1112 6897 45 1 1 chr4 69126011 69126856 -86503264 + L1Md_F2 LINE L1 5725 6569 -13 1 1112 348 250 75 33 chr4 69127006 69127126 -86502994 + MIR3 SINE MIR 81 205 -3 1 1112 746 360 15 19 chr4 69128378 69128644 -86501476 + B4A SINE B4 10 274 -18 1 1112 964 292 71 30 chr4 69128823 69129187 -86500933 + MTE2a LTR MaLR 1 379 0 1 1112 243 0 0 0 chr4 69129503 69129530 -86500590 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1112 512 345 79 60 chr4 69129530 69129949 -86500171 + MLT1D LTR MaLR 21 447 -58 1 1112 576 321 141 32 chr4 69129997 69130692 -86499428 + L1MD2 LINE L1 4478 5248 -898 1 1112 286 331 74 8 chr4 69130719 69130841 -86499279 + B1F SINE Alu 18 147 -2 1 1112 630 117 0 0 chr4 69130911 69131022 -86499098 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 1112 413 360 6 24 chr4 69131023 69131188 -86498932 - B3A SINE B2 -36 162 1 1 1112 481 324 56 58 chr4 69131204 69131598 -86498522 + L1MD2 LINE L1 5588 5980 -379 1 1112 303 283 19 0 chr4 69131903 69132009 -86498111 - MER113A DNA MER1_type 0 314 207 1 1112 180 312 0 114 chr4 69132984 69133089 -86497031 + MIRm SINE MIR 85 177 -99 1 1112 301 266 27 2 chr4 69133245 69133333 -86496787 - MTE2a LTR MaLR -17 362 272 1 1112 400 382 36 0 chr4 69133350 69133515 -86496605 - B3 SINE B2 -34 182 12 1 1112 416 300 102 98 chr4 69133524 69133768 -86496352 - MTE2a LTR MaLR -97 282 38 1 1112 262 286 120 48 chr4 69134516 69134641 -86495479 + L2b LINE L2 3227 3360 -15 1 1112 221 232 35 18 chr4 69135037 69135094 -86495026 - MIRb SINE MIR -28 240 183 1 1112 192 77 0 0 chr4 69135106 69135132 -86494988 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1112 2403 286 52 11 chr4 69135184 69135526 -86494594 - RMER1C Other Other -1 1341 998 1 1112 192 40 0 0 chr4 69135526 69135551 -86494569 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1 1112 2403 286 52 11 chr4 69135551 69135923 -86494197 - RMER1C Other Other -345 997 598 1 1112 441 0 0 0 chr4 69136010 69136059 -86494061 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1112 779 314 16 69 chr4 69136820 69137124 -86492996 + B4 SINE B4 4 291 -1 1 1112 942 340 85 31 chr4 69137575 69138324 -86491796 + Lx8 LINE L1 6678 7467 -6 1 1112 1403 259 65 45 chr4 69142034 69142998 -86487122 - L1M2 LINE L1 -523 5645 4663 1 1112 262 326 157 22 chr4 69143362 69143547 -86486573 + MIRb SINE MIR 37 246 -22 1 1112 239 284 43 86 chr4 69143975 69144114 -86486006 + MER121 Unknown Unknown 17 149 -263 1 1112 261 233 0 14 chr4 69144386 69144460 -86485660 - L1M2 LINE L1 -628 5663 5591 1 1112 286 222 0 0 chr4 69144733 69144805 -86485315 + L1_Rod LINE L1 5532 5667 -624 1 1112 901 231 0 37 chr4 69145180 69145396 -86484724 - L1_Mur3 LINE L1 -267 5613 5406 1 1112 1952 272 15 42 chr4 69145402 69145927 -86484193 - Lx5 LINE L1 0 7050 6540 1 1112 10826 210 34 161 chr4 69145939 69146683 -86483437 - L1VL2 LINE L1 -482 5401 4644 1 1112 609 27 0 0 chr4 69146683 69146758 -86483362 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1112 11964 165 24 76 chr4 69146758 69151646 -86478474 - L1VL2 LINE L1 -1240 4643 360 1 1112 2787 243 25 70 chr4 69151644 69152792 -86477328 - L1_Mur2 LINE L1 -2647 3233 2071 1 1112 261 0 0 0 chr4 69152797 69152826 -86477294 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1112 255 31 0 0 chr4 69152908 69152940 -86477180 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1112 684 274 71 50 chr4 69152945 69153341 -86476779 - L1M3 LINE L1 -3296 2844 2441 1 1112 465 259 123 16 chr4 69153590 69153833 -86476287 + L1M3 LINE L1 2111 2379 -3761 1 1112 1979 110 0 11 chr4 69153915 69154201 -86475919 + MTA_Mm LTR MaLR 114 396 0 2 1112 250 203 30 30 chr4 69154272 69154338 -86475782 + GA-rich Low_complexity Low_complexity 3 68 0 2 1112 242 364 51 25 chr4 69155418 69155466 -86474654 - MLT2C1 LTR ERVL -125 272 223 2 1112 1495 207 123 35 chr4 69155466 69155872 -86474248 - RMER10A LTR ERVL 0 442 1 2 1112 242 364 51 25 chr4 69155872 69155981 -86474139 - MLT2C1 LTR ERVL -175 222 111 2 1112 1174 90 11 0 chr4 69155989 69156167 -86473953 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1112 1782 143 18 0 chr4 69156191 69156477 -86473643 - Lx2 LINE L1 0 6997 6707 2 1112 225 303 0 38 chr4 69156479 69156558 -86473562 - MLT2C1 LTR ERVL -290 107 32 2 1112 1547 198 16 44 chr4 69156888 69157344 -86472776 - RMER17C LTR ERVK -519 439 16 2 1112 450 36 0 0 chr4 69158154 69158210 -86471910 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1112 650 172 0 11 chr4 69158211 69158393 -86471727 + GA-rich Low_complexity Low_complexity 1 180 0 2 1112 205 86 29 0 chr4 69158415 69158450 -86471670 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1112 315 0 0 0 chr4 69158550 69158585 -86471535 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1112 790 346 44 11 chr4 69158969 69159241 -86470879 + B4 SINE B4 12 292 0 2 1112 774 245 46 5 chr4 69159273 69159470 -86470650 - B3 SINE B2 -9 207 3 2 1112 239 306 29 67 chr4 69160058 69160163 -86469957 - L2c LINE L2 0 3387 3287 2 1112 272 281 103 63 chr4 69160126 69160301 -86469819 + L3 LINE CR1 4279 4460 -29 2 1112 421 285 43 7 chr4 69160467 69160605 -86469515 + MIRc SINE MIR 100 242 -26 2 1112 416 264 71 8 chr4 69160650 69160776 -86469344 + Lx8 LINE L1 6344 6477 -996 2 1112 821 326 52 54 chr4 69160797 69161471 -86468649 + Lx9 LINE L1 6851 7529 -115 2 1112 342 0 0 0 chr4 69161471 69161509 -86468611 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1112 821 326 52 54 chr4 69161509 69161615 -86468505 + Lx9 LINE L1 7530 7630 -14 2 1112 185 204 39 39 chr4 69162144 69162195 -86467925 - L2c LINE L2 -50 3337 3287 2 1112 4888 152 51 13 chr4 69162910 69163915 -86466205 + Lx2 LINE L1 5848 6983 -17 2 1112 450 292 85 65 chr4 69164854 69165055 -86465065 + MIRc SINE MIR 13 217 -51 2 1112 423 313 30 38 chr4 69165383 69165516 -86464604 + MLT1J LTR MaLR 83 214 -298 2 1112 196 360 30 10 chr4 69166187 69166288 -86463832 - MIRb SINE MIR -149 119 17 2 1112 246 178 40 14 chr4 69167116 69167190 -86462930 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1112 266 341 12 12 chr4 69167341 69167424 -86462696 - RSINE1 SINE B4 0 165 83 2 1112 370 313 45 89 chr4 69167475 69167654 -86462466 - B4 SINE B4 -120 172 2 2 1112 266 346 22 43 chr4 69168223 69168362 -86461758 + L2 LINE L2 2481 2616 -803 2 1112 2330 152 43 48 chr4 69170356 69170819 -86459301 + RMER6B LTR ERVK 1 461 0 2 1112 249 220 0 17 chr4 69170844 69170904 -86459216 + MER103 DNA DNA 37 95 -71 2 1112 37472 19 2 7 chr4 69170962 69176346 -86453774 + L1Md_A LINE L1 235 5585 -298 2 1112 8685 18 1 0 chr4 69176347 69177342 -86452778 + L1Md_A LINE L1 5587 6582 0 2 1112 6489 137 35 0 chr4 69178261 69178465 -86451655 - Lx4A LINE L1 -1057 6001 5796 2 1112 405 0 0 0 chr4 69178465 69178510 -86451610 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1112 8762 79 40 1 chr4 69178510 69179889 -86450231 - Lx4A LINE L1 -88 5798 4129 2 1112 2909 50 0 6 chr4 69179881 69180244 -86449876 + L1Md_F3 LINE L1 5226 5586 -297 2 1112 8292 39 2 1 chr4 69180244 69181241 -86448879 + L1Md_F3 LINE L1 5587 6584 0 2 1112 305 170 0 0 chr4 69181241 69181288 -86448832 - L1_Mur2 LINE L1 -358 5519 5473 2 1112 3488 183 45 31 chr4 69181286 69182231 -86447889 + Lx4B LINE L1 6043 7039 -11 2 1112 284 288 0 0 chr4 69182766 69182832 -86447288 + GA-rich Low_complexity Low_complexity 2 67 0 2 1112 336 77 0 0 chr4 69182842 69182894 -86447226 + (CAGAGA)n Simple_repeat Simple_repeat 4 55 0 2 1112 441 0 0 0 chr4 69183065 69183114 -86447006 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1112 414 0 0 0 chr4 69183463 69183509 -86446611 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1112 207 0 0 0 chr4 69183598 69183621 -86446499 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1112 25 0 0 0 chr4 69184229 69184254 -86445866 + AT_rich Low_complexity Low_complexity 1 25 0 2 1112 263 28 28 0 chr4 69185217 69185253 -86444867 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1112 1660 83 4 4 chr4 69185870 69186101 -86444019 - L1_Mus2 LINE L1 0 6566 6336 2 1112 283 177 41 10 chr4 69186761 69186858 -86443262 + GA-rich Low_complexity Low_complexity 2 101 0 2 1112 635 347 116 18 chr4 69187318 69187817 -86442303 + L1MEg LINE L1 934 1481 -4603 2 1112 21 0 0 0 chr4 69188333 69188354 -86441766 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 406 296 40 0 chr4 69189710 69189835 -86440285 + MIRc SINE MIR 125 254 -14 2 1112 670 277 25 10 chr4 69190213 69190410 -86439710 - MIR SINE MIR -26 236 37 2 1112 209 250 54 27 chr4 69190433 69190507 -86439613 + (CATG)n Simple_repeat Simple_repeat 3 78 0 2 1112 561 99 0 0 chr4 69190521 69190602 -86439518 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1112 616 320 10 44 chr4 69190717 69190920 -86439200 - B3A SINE B2 0 198 3 2 1112 440 326 94 36 chr4 69190920 69191138 -86438982 - B4 SINE B4 -59 233 3 2 1112 1697 165 69 0 chr4 69193481 69193784 -86436336 + ORR1A4 LTR MaLR 3 326 -3 2 1112 352 255 134 25 chr4 69194023 69194180 -86435940 + L1MB3 LINE L1 6002 6175 -8 2 1112 585 28 0 0 chr4 69194458 69194529 -86435591 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1112 994 44 15 0 chr4 69195170 69195306 -86434814 + (GA)n Simple_repeat Simple_repeat 2 139 0 2 1112 303 317 78 18 chr4 69196386 69196553 -86433567 + MER5B DNA MER1_type 2 178 0 2 1112 573 42 0 0 chr4 69196573 69196645 -86433475 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1112 847 148 0 0 chr4 69197825 69197960 -86432160 - L1_Mur2 LINE L1 -2198 3679 3545 2 1112 3013 164 14 4 chr4 69197960 69198468 -86431652 + Lx3C LINE L1 6460 6972 -4 2 1112 733 353 9 30 chr4 69198608 69198839 -86431281 + B4A SINE B4 46 271 -21 2 1112 486 0 0 0 chr4 69198842 69198896 -86431224 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1112 37 0 0 0 chr4 69198939 69198976 -86431144 + AT_rich Low_complexity Low_complexity 1 37 0 2 1112 566 265 92 6 chr4 69199455 69199618 -86430502 - Tigger16a DNA Tigger -3 930 754 2 1112 444 116 0 0 chr4 69199891 69199977 -86430143 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1112 242 305 54 54 chr4 69200712 69200823 -86429297 + MLT1A0 LTR MaLR 255 365 0 2 1112 274 325 88 36 chr4 69202250 69202408 -86427712 - MIRb SINE MIR -101 175 13 2 1112 775 176 55 88 chr4 69202653 69202834 -86427286 + B2_Mm2 SINE B2 9 183 -12 2 1112 23 54 0 0 chr4 69202834 69202871 -86427249 + AT_rich Low_complexity Low_complexity 1 37 0 2 1112 448 222 36 0 chr4 69202871 69202993 -86427127 + Lx5 LINE L1 6344 6493 -565 2 1112 1152 240 143 43 chr4 69203337 69203707 -86426413 - MTD LTR MaLR 0 419 13 2 1112 523 331 81 16 chr4 69204115 69204373 -86425747 + B4A SINE B4 2 276 -16 2 1112 571 303 113 5 chr4 69204625 69204847 -86425273 - MLT1D LTR MaLR 0 505 260 2 1112 1447 326 75 22 chr4 69204941 69205637 -86424483 + Lx8 LINE L1 6716 7448 -25 2 1112 183 139 0 0 chr4 69205964 69206000 -86424120 + (TATG)n Simple_repeat Simple_repeat 2 37 0 2 1113 273 57 0 0 chr4 69206042 69206077 -86424043 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1113 189 0 0 0 chr4 69206102 69206123 -86423997 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1113 906 81 0 0 chr4 69206123 69206247 -86423873 - B1_Mus1 SINE Alu 0 148 25 2 1113 229 319 0 141 chr4 69206284 69206419 -86423701 + MIRb SINE MIR 82 197 -71 2 1113 293 136 0 0 chr4 69206476 69206520 -86423600 + Lx7 LINE L1 7265 7308 -388 2 1113 324 0 0 0 chr4 69206536 69206572 -86423548 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1113 27 49 0 0 chr4 69206708 69206749 -86423371 + AT_rich Low_complexity Low_complexity 1 41 0 2 1113 213 184 0 0 chr4 69207719 69207757 -86422363 - MIRc SINE MIR -115 153 116 2 1113 384 232 20 10 chr4 69207845 69207945 -86422175 - BC1_Mm scRNA scRNA -51 101 1 2 1113 7710 87 9 0 chr4 69210177 69211219 -86418901 + L1_Mus3 LINE L1 5588 6638 0 2 1113 1265 284 44 3 chr4 69211600 69211921 -86418199 + MTEa LTR MaLR 1 334 -45 2 1113 343 359 26 52 chr4 69212777 69212930 -86417190 - B4A SINE B4 -142 150 2 2 1113 936 27 0 0 chr4 69213226 69213337 -86416783 + (GAAA)n Simple_repeat Simple_repeat 3 113 0 2 1113 327 25 0 0 chr4 69213337 69213376 -86416744 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 2 1113 249 305 87 14 chr4 69215018 69215160 -86414960 - MIR SINE MIR -94 168 15 2 1113 435 282 0 43 chr4 69215969 69216084 -86414036 + B4 SINE B4 2 111 -181 2 1113 237 290 29 0 chr4 69216109 69216178 -86413942 + B4 SINE B4 222 292 0 2 1113 636 14 0 0 chr4 69216241 69216314 -86413806 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2 1113 228 271 108 14 chr4 69216568 69216652 -86413468 + ID4_ SINE ID 2 93 -59 2 1113 358 317 19 0 chr4 69216960 69217064 -86413056 - MLT1F2 LTR MaLR -108 404 299 2 1113 348 387 45 10 chr4 69217109 69217310 -86412810 + MLT1F LTR MaLR 1 208 -340 2 1113 260 226 150 95 chr4 69217377 69217524 -86412596 + MLT1F LTR MaLR 350 504 -44 2 1113 252 242 0 16 chr4 69217809 69217872 -86412248 + CT-rich Low_complexity Low_complexity 3 64 0 2 1113 365 331 98 55 chr4 69217872 69218128 -86411992 - MLT1F2 LTR MaLR -276 284 18 2 1113 192 357 198 0 chr4 69218471 69218653 -86411467 + MIRb SINE MIR 42 259 -9 2 1113 462 295 110 0 chr4 69218741 69218941 -86411179 - ID_B1 SINE B4 -2 222 1 2 1113 236 311 0 26 chr4 69219152 69219210 -86410910 - RCHARR1 DNA MER1_type -1 973 917 2 1113 399 21 0 0 chr4 69219210 69219258 -86410862 + (CTA)n Simple_repeat Simple_repeat 3 50 0 3 1113 236 311 0 26 chr4 69219258 69219275 -86410845 - RCHARR1 DNA MER1_type -58 916 900 2 1113 16997 167 49 14 chr4 69219275 69221427 -86408693 - L1VL4 LINE L1 -1081 4802 2611 3 1113 4086 38 4 14 chr4 69221427 69221930 -86408190 - L1Md_F2 LINE L1 -15 6567 6070 3 1113 16997 163 31 11 chr4 69221930 69224070 -86406050 - L1VL4 LINE L1 -3273 2610 388 3 1113 289 244 25 37 chr4 69224086 69224167 -86405953 - B4 SINE B4 -202 90 11 3 1113 1005 124 0 0 chr4 69224248 69224385 -86405735 - B1_Mus2 SINE Alu -9 138 2 3 1113 1651 235 93 38 chr4 69224385 69225007 -86405113 - RCHARR1 DNA MER1_type -91 883 228 2 1113 35577 36 22 6 chr4 69225018 69231070 -86399050 - L1Md_T LINE L1 0 6582 441 3 1113 379 357 40 34 chr4 69231083 69231260 -86398860 - RCHARR1 DNA MER1_type -763 211 34 2 1113 431 48 16 0 chr4 69231979 69232041 -86398079 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1113 458 314 31 38 chr4 69232967 69233126 -86396994 + MER20 DNA MER1_type 23 180 -39 3 1113 245 317 83 14 chr4 69233711 69233855 -86396265 + MIRb SINE MIR 69 222 -46 3 1113 252 338 36 43 chr4 69234554 69234693 -86395427 - L2a LINE L2 0 3426 3289 3 1113 609 299 22 125 chr4 69234806 69235216 -86394904 - ORR1E LTR MaLR 0 370 1 3 1113 807 40 0 0 chr4 69236228 69236327 -86393793 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1113 992 310 36 11 chr4 69236371 69236651 -86393469 - B4 SINE B4 -4 288 2 3 1113 502 241 142 42 chr4 69236803 69237015 -86393105 + MER58B DNA MER1_type 54 286 -55 3 1113 189 0 0 0 chr4 69239107 69239128 -86390992 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1113 5181 57 1 3 chr4 69239352 69240006 -86390114 - L1Md_F2 LINE L1 -4 6578 5926 3 1113 25 0 0 0 chr4 69240238 69240263 -86389857 + AT_rich Low_complexity Low_complexity 1 25 0 3 1113 845 73 0 0 chr4 69240271 69240380 -86389740 - B1_Mm SINE Alu -1 146 38 3 1113 195 211 0 0 chr4 69240717 69240751 -86389369 + polypurine Low_complexity Low_complexity 2 35 0 3 1113 297 51 0 0 chr4 69240751 69240790 -86389330 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 1113 195 211 0 0 chr4 69240790 69240812 -86389308 + polypurine Low_complexity Low_complexity 36 57 0 3 1113 323 380 43 22 chr4 69241296 69241527 -86388593 + MIR SINE MIR 24 259 -3 3 1113 181 378 13 71 chr4 69241544 69241698 -86388422 + L2c LINE L2 3242 3386 -1 3 1113 731 214 99 186 chr4 69242370 69242783 -86387337 + MTE2b LTR MaLR 3 379 0 3 1113 244 261 19 25 chr4 69243706 69243790 -86386330 + ZP3AR Satellite Satellite 1 83 -85 3 1113 458 273 81 69 chr4 69244018 69244181 -86385939 + MLT1D LTR MaLR 47 211 -294 3 1113 696 282 22 101 chr4 69244181 69244457 -86385663 + B4 SINE B4 1 254 -38 3 1113 492 326 33 17 chr4 69245649 69245830 -86384290 + B3A SINE B2 13 196 -2 3 1113 348 24 0 0 chr4 69246481 69246522 -86383598 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1113 267 138 62 0 chr4 69247549 69247629 -86382491 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 3 1113 26 0 0 0 chr4 69247990 69248016 -86382104 + AT_rich Low_complexity Low_complexity 1 26 0 3 1113 191 271 0 0 chr4 69251018 69251066 -86379054 - MIRb SINE MIR -39 229 182 3 1113 227 238 0 0 chr4 69251074 69251116 -86379004 + (CCA)n Simple_repeat Simple_repeat 1 42 0 3 1113 302 311 6 32 chr4 69252602 69252640 -86377480 + (TCCA)n Simple_repeat Simple_repeat 2 39 0 3 1113 472 54 54 0 chr4 69252640 69252714 -86377406 + (CATA)n Simple_repeat Simple_repeat 3 80 0 3 1113 302 311 6 32 chr4 69252714 69252831 -86377289 + (TCCA)n Simple_repeat Simple_repeat 4 117 0 3 1113 344 325 152 30 chr4 69253946 69254241 -86375879 + MLT1A0 LTR MaLR 5 335 -30 3 1113 207 214 89 0 chr4 69255719 69255775 -86374345 - MIR SINE MIR -61 147 87 3 1113 2922 91 25 2 chr4 69256405 69256801 -86373319 + MTB_Mm LTR MaLR 3 407 0 3 1113 600 221 43 43 chr4 69257799 69257960 -86372160 - ORR1E LTR MaLR -196 163 3 3 1113 259 375 107 94 chr4 69258651 69259045 -86371075 - L2b LINE L2 -25 3350 2952 3 1113 410 322 28 7 chr4 69259418 69259562 -86370558 + MTD LTR MaLR 13 159 -260 3 1113 257 83 0 40 chr4 69260950 69261000 -86369120 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 3 1113 1659 252 46 24 chr4 69261443 69261853 -86368267 + MTD LTR MaLR 1 419 0 3 1113 230 206 63 0 chr4 69262078 69262141 -86367979 + (TATG)n Simple_repeat Simple_repeat 3 69 0 3 1113 824 315 95 11 chr4 69262147 69262410 -86367710 - B4 SINE B4 -6 286 2 3 1113 681 312 76 47 chr4 69263785 69264061 -86366059 + B4A SINE B4 3 286 -6 3 1113 239 171 27 67 chr4 69264077 69264152 -86365968 + A-rich Low_complexity Low_complexity 6 77 0 3 1113 220 274 115 100 chr4 69264271 69264401 -86365719 - RSINE1 SINE B4 -23 142 11 3 1113 387 0 0 0 chr4 69264973 69265016 -86365104 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3 1113 324 0 0 0 chr4 69265560 69265596 -86364524 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1113 580 309 97 49 chr4 69267158 69267488 -86362632 - ORR1E LTR MaLR 0 379 30 3 1113 733 128 7 15 chr4 69267530 69267665 -86362455 + (CATATA)n Simple_repeat Simple_repeat 4 137 0 3 1113 202 200 0 0 chr4 69267785 69267830 -86362290 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1113 429 20 0 0 chr4 69268004 69268054 -86362066 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1113 340 325 17 9 chr4 69268794 69268909 -86361211 - MER5A DNA MER1_type -73 116 1 3 1113 227 122 20 0 chr4 69269491 69269540 -86360580 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 3 1113 276 30 0 0 chr4 69269540 69269573 -86360547 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1113 315 92 46 0 chr4 69269573 69269637 -86360483 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1113 574 275 33 50 chr4 69269953 69270133 -86359987 - MIR SINE MIR -85 177 1 3 1113 433 259 30 0 chr4 69270440 69270575 -86359545 - L1M5 LINE L1 -647 5532 5394 3 1113 363 241 133 1 chr4 69270702 69270819 -86359301 - MLT1A1 LTR MaLR -39 369 197 3 1113 333 189 74 19 chr4 69271039 69271201 -86358919 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 3 1113 458 299 14 7 chr4 69271426 69271571 -86358549 - MLT1D LTR MaLR -8 497 352 3 1113 4060 82 4 0 chr4 69271622 69272159 -86357961 + L1_Mus3 LINE L1 6094 6632 -6 3 1113 396 287 52 61 chr4 69272177 69272292 -86357828 + B3A SINE B2 41 154 -44 3 1113 441 36 0 0 chr4 69272293 69272348 -86357772 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1113 187 278 19 0 chr4 69272916 69272970 -86357150 + L3 LINE CR1 4432 4486 -3 3 1113 258 315 11 43 chr4 69274810 69274903 -86355217 + ID_B1 SINE B4 80 169 -55 3 1113 396 308 9 0 chr4 69274825 69274932 -86355188 + PB1D10 SINE Alu 10 117 0 3 1113 373 339 96 105 chr4 69275374 69275697 -86354423 + MT2A LTR ERVL 5 324 -209 3 1113 517 199 42 78 chr4 69276495 69276637 -86353483 - MLT1B LTR MaLR -2 388 252 3 1113 1166 285 60 47 chr4 69276611 69276991 -86353129 + MTD LTR MaLR 35 419 0 3 1113 327 275 152 24 chr4 69277374 69277538 -86352582 - MIR SINE MIR 0 262 78 3 1113 507 82 0 0 chr4 69278420 69278493 -86351627 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1113 300 120 0 0 chr4 69278495 69278545 -86351575 + (TGG)n Simple_repeat Simple_repeat 1 50 0 3 1113 213 308 19 70 chr4 69278829 69278986 -86351134 - L2 LINE L2 -896 2523 2375 3 1113 267 181 14 0 chr4 69279106 69279178 -86350942 + Lx5 LINE L1 6978 7050 0 3 1113 378 100 0 0 chr4 69279668 69279728 -86350392 + (T)n Simple_repeat Simple_repeat 1 60 0 3 1113 185 59 0 56 chr4 69281094 69281130 -86348990 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1113 786 22 0 0 chr4 69281186 69281278 -86348842 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 3 1113 792 21 0 0 chr4 69281367 69281461 -86348659 + (GA)n Simple_repeat Simple_repeat 1 94 0 3 1113 181 244 0 22 chr4 69281697 69281743 -86348377 + L3 LINE CR1 149 193 -4296 3 1113 180 393 125 25 chr4 69282612 69282732 -86347388 - MIRm SINE MIR -16 260 129 3 1113 208 26 49 49 chr4 69283178 69283219 -86346901 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 3 1113 660 87 0 0 chr4 69283238 69283330 -86346790 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 3 1113 488 301 34 14 chr4 69284039 69284187 -86345933 - MER117 DNA MER1_type -46 151 1 3 1113 1939 193 0 9 chr4 69284348 69284693 -86345427 - Lx4A LINE L1 -3 7055 6714 3 1113 261 0 0 0 chr4 69284891 69284920 -86345200 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1113 184 301 53 21 chr4 69285271 69285366 -86344754 - MER5B DNA MER1_type -73 105 8 3 1113 315 96 0 0 chr4 69285539 69285591 -86344529 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 3 1113 23 68 0 0 chr4 69285878 69285922 -86344198 + AT_rich Low_complexity Low_complexity 1 44 0 3 1113 285 364 89 32 chr4 69286142 69286332 -86343788 - MER58A DNA MER1_type -18 206 6 3 1113 23 0 0 0 chr4 69286783 69286806 -86343314 + AT_rich Low_complexity Low_complexity 1 23 0 3 1113 5672 86 28 19 chr4 69287298 69287415 -86342705 - Lx LINE L1 -1 6653 6535 3 1113 195 42 0 0 chr4 69287415 69287439 -86342681 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 3 1113 5672 86 28 19 chr4 69287439 69287642 -86342478 - Lx LINE L1 -120 6534 6330 3 1113 2566 135 5 2 chr4 69287642 69288044 -86342076 + RLTR9D LTR ERVK 1 403 0 3 1113 5672 86 28 19 chr4 69288044 69288551 -86341569 - Lx LINE L1 -325 6329 5820 3 1113 418 351 26 10 chr4 69288726 69288919 -86341201 - Lx8 LINE L1 -122 7351 7156 3 1113 324 314 63 38 chr4 69289575 69289734 -86340386 - MIR3 SINE MIR -26 182 20 3 1113 423 132 0 0 chr4 69289938 69290006 -86340114 + (TCC)n Simple_repeat Simple_repeat 3 70 0 3 1113 5296 92 7 3 chr4 69290659 69291407 -86338713 - Lx3_Mus LINE L1 0 7009 6259 4 1113 717 327 18 6 chr4 69291582 69291751 -86338369 - B4 SINE B4 -42 250 80 4 1113 261 217 67 0 chr4 69291782 69291842 -86338278 - B4 SINE B4 -207 85 22 4 1113 226 272 12 12 chr4 69292178 69292260 -86337860 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 4 1113 597 102 0 106 chr4 69293136 69293268 -86336852 - L1_Mus1 LINE L1 0 6567 6450 4 1113 233 286 25 38 chr4 69293268 69293348 -86336772 + MER5A DNA MER1_type 89 167 -22 4 1113 180 125 0 0 chr4 69294017 69294049 -86336071 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1113 511 249 191 5 chr4 69294271 69294481 -86335639 - MER58B DNA MER1_type 0 341 93 4 1113 21 0 0 0 chr4 69294488 69294509 -86335611 + AT_rich Low_complexity Low_complexity 1 21 0 4 1113 211 407 44 51 chr4 69295836 69295994 -86334126 + ID_B1 SINE B4 1 157 -67 4 1113 235 253 12 37 chr4 69296126 69296208 -86333912 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 4 1113 200 350 17 0 chr4 69296600 69296660 -86333460 - L2b LINE L2 -15 3360 3300 4 1113 630 274 68 44 chr4 69297155 69297476 -86332644 + RLTR15 LTR ERVK 1 329 -30 4 1113 1163 86 12 6 chr4 69297476 69297640 -86332480 - Lx3_Mus LINE L1 -364 6645 6481 4 1113 1652 133 4 7 chr4 69297640 69297913 -86332207 + Lx3_Mus LINE L1 6738 7009 0 4 1113 229 333 0 0 chr4 69298194 69298269 -86331851 + MIRb SINE MIR 120 194 -74 4 1113 215 194 0 0 chr4 69298399 69298435 -86331685 + polypyrimidine Low_complexity Low_complexity 1 36 0 4 1113 1169 98 6 0 chr4 69298716 69298890 -86331230 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 4 1113 1008 25 0 0 chr4 69298899 69299018 -86331102 + (GAA)n Simple_repeat Simple_repeat 3 121 0 4 1113 633 14 0 0 chr4 69299018 69299092 -86331028 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 4 1113 1543 211 180 8 chr4 69299330 69299685 -86330435 + MTC LTR MaLR 1 416 -5 4 1113 279 268 87 46 chr4 69300170 69300351 -86329769 + MIRb SINE MIR 34 218 -50 4 1113 365 384 14 14 chr4 69301145 69301293 -86328827 - MIRb SINE MIR -86 182 35 4 1113 346 95 48 0 chr4 69302140 69302203 -86327917 + (GAAAA)n Simple_repeat Simple_repeat 2 67 0 4 1113 232 329 53 0 chr4 69302961 69303037 -86327083 - MIR SINE MIR -135 127 48 4 1113 357 244 0 156 chr4 69303715 69303856 -86326264 + PB1D9 SINE Alu 2 120 0 4 1113 1367 232 71 6 chr4 69304167 69304518 -86325602 + ORR1D1 LTR MaLR 1 374 0 4 1113 201 39 0 0 chr4 69305327 69305353 -86324767 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1113 25 0 0 0 chr4 69306156 69306181 -86323939 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 358 351 83 21 chr4 69306202 69306394 -86323726 + B3 SINE B2 1 204 -12 4 1113 1055 299 42 29 chr4 69307008 69307315 -86322805 + MTE2b LTR MaLR 3 313 -66 4 1113 182 171 0 24 chr4 69307330 69307372 -86322748 + GA-rich Low_complexity Low_complexity 3 43 0 4 1113 19870 20 0 0 chr4 69307434 69309750 -86320370 + L1Md_T LINE L1 3271 5586 -297 4 1113 8947 7 0 0 chr4 69309750 69310746 -86319374 + L1Md_T LINE L1 5587 6582 0 4 1113 200 103 0 0 chr4 69310766 69310795 -86319325 - MIRm SINE MIR -170 106 78 4 1113 192 309 82 0 chr4 69311782 69311879 -86318241 - MIRb SINE MIR -147 121 17 4 1113 214 330 0 71 chr4 69311882 69311980 -86318140 - L2a LINE L2 -14 3412 3322 4 1113 2586 78 14 0 chr4 69312372 69312718 -86317402 - L1_Mus1 LINE L1 0 6567 6217 4 1113 275 271 0 0 chr4 69313365 69313460 -86316660 + A-rich Low_complexity Low_complexity 1 95 0 4 1113 226 318 22 45 chr4 69313498 69313587 -86316533 - L2a LINE L2 0 3426 3340 4 1113 21 0 0 31 chr4 69313665 69313676 -86316444 + AT_rich Low_complexity Low_complexity 1 11 0 4 1113 3185 45 2 27 chr4 69313676 69314085 -86316035 + L1Md_F3 LINE L1 6171 6569 -15 4 1113 21 0 0 31 chr4 69314085 69314105 -86316015 + AT_rich Low_complexity Low_complexity 1 20 0 4 1113 1183 258 34 54 chr4 69314123 69314475 -86315645 - MTE2b LTR MaLR -34 345 1 4 1113 189 0 0 0 chr4 69314535 69314556 -86315564 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1113 2846 84 33 15 chr4 69314843 69315241 -86314879 - MTB_Mm LTR MaLR 0 407 3 4 1113 843 221 192 14 chr4 69315444 69315720 -86314400 - Lx4B LINE L1 -1 7057 6733 4 1113 369 0 0 0 chr4 69316036 69316077 -86314043 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1113 1176 81 0 0 chr4 69316079 69316253 -86313867 + (GAA)n Simple_repeat Simple_repeat 1 174 0 4 1113 346 108 15 15 chr4 69316254 69316320 -86313800 + (GGA)n Simple_repeat Simple_repeat 2 67 0 4 1113 391 113 0 27 chr4 69316315 69316388 -86313732 + (GAAAA)n Simple_repeat Simple_repeat 4 74 0 4 1113 643 295 74 70 chr4 69316591 69316861 -86313259 + B4A SINE B4 22 292 0 4 1113 219 133 0 0 chr4 69317171 69317216 -86312904 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1113 662 44 11 0 chr4 69317433 69317523 -86312597 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 1113 189 94 0 0 chr4 69318610 69318642 -86311478 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 4 1113 186 298 28 113 chr4 69318857 69318963 -86311157 + MIR SINE MIR 16 112 -96 4 1113 683 231 7 0 chr4 69319295 69319442 -86310678 + B1_Mus1 SINE Alu 1 148 0 4 1113 524 178 9 0 chr4 69319445 69319552 -86310568 + GA-rich Low_complexity Low_complexity 2 109 0 4 1113 352 0 0 40 chr4 69320149 69320199 -86309921 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1113 1364 39 6 0 chr4 69320382 69320561 -86309559 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1113 242 206 16 0 chr4 69320573 69320636 -86309484 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 4 1113 2070 252 74 8 chr4 69320638 69321166 -86308954 - RLTR20B1 LTR ERVK 0 563 1 4 1113 226 185 93 0 chr4 69322160 69322214 -86307906 - L2a LINE L2 -1 3425 3367 4 1113 1576 230 72 56 chr4 69322235 69322737 -86307383 - RLTR11A2 LTR ERVK -17 510 1 4 1113 278 339 73 0 chr4 69323711 69323835 -86306285 - MIR SINE MIR -94 168 36 4 1113 185 194 0 0 chr4 69324337 69324373 -86305747 + MIR SINE MIR 224 259 -3 4 1113 312 391 73 0 chr4 69324738 69324849 -86305271 - MIRb SINE MIR -8 260 147 4 1113 216 0 0 0 chr4 69324849 69324873 -86305247 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1113 312 391 73 0 chr4 69324873 69324953 -86305167 - MIRb SINE MIR -122 146 56 4 1113 712 299 16 123 chr4 69325458 69325775 -86304345 + B4 SINE B4 2 284 -8 4 1113 287 192 14 0 chr4 69325788 69325861 -86304259 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1113 428 245 21 31 chr4 69325897 69325994 -86304126 - MTE2a LTR MaLR -175 204 109 4 1113 1196 65 141 0 chr4 69326015 69326185 -86303935 - L1_Mus2 LINE L1 -4 6562 6369 4 1113 567 325 77 4 chr4 69326243 69326515 -86303605 + L2 LINE L2 146 437 -2982 4 1113 1009 295 45 42 chr4 69326955 69327572 -86302548 - L1MB8 LINE L1 -50 6128 5495 4 1113 396 0 0 0 chr4 69327767 69327811 -86302309 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1113 320 359 76 31 chr4 69327814 69328104 -86302016 + L2 LINE L2 914 1216 -2203 4 1113 499 325 81 17 chr4 69328167 69328339 -86301781 + B3 SINE B2 2 184 -32 4 1113 189 74 0 0 chr4 69328356 69328383 -86301737 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1113 234 362 42 111 chr4 69328426 69328687 -86301433 + L2 LINE L2 1860 2102 -1317 4 1113 406 278 118 41 chr4 69329541 69329710 -86300410 - RMER20B LTR ERVK -211 416 235 4 1113 1099 302 108 11 chr4 69330133 69330885 -86299235 - L1MB8 LINE L1 -62 6116 5288 4 1113 216 0 0 0 chr4 69331091 69331115 -86299005 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1113 184 333 16 0 chr4 69331546 69331609 -86298511 - MIRc SINE MIR -110 158 95 4 1113 227 265 29 29 chr4 69332554 69332624 -86297496 - MIRc SINE MIR -84 184 115 4 1113 621 326 13 13 chr4 69332782 69333006 -86297114 - ID_B1 SINE B4 0 224 1 4 1113 213 322 66 25 chr4 69333018 69333139 -86296981 + MIRb SINE MIR 93 218 -50 4 1113 483 87 0 0 chr4 69333690 69333759 -86296361 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1113 467 352 76 60 chr4 69333886 69334415 -86295705 - L2 LINE L2 -560 2859 2323 4 1113 346 91 0 57 chr4 69334566 69334636 -86295484 + (TCTCCC)n Simple_repeat Simple_repeat 1 66 0 4 1113 201 305 122 0 chr4 69334655 69334737 -86295383 + L2c LINE L2 3272 3363 -24 4 1113 406 332 147 0 chr4 69335012 69335223 -86294897 + B4A SINE B4 33 274 -18 4 1113 224 204 0 0 chr4 69335276 69335320 -86294800 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1113 347 338 95 63 chr4 69336201 69336484 -86293636 + L2c LINE L2 3085 3378 -9 4 1113 378 0 0 0 chr4 69336742 69336784 -86293336 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 139 843 331 17 7 chr4 69336833 69337122 -86292998 - B4A SINE B4 0 292 1 4 1114 21 82 0 0 chr4 69337740 69337789 -86292331 + AT_rich Low_complexity Low_complexity 1 49 0 4 1114 34 24 0 0 chr4 69337914 69337955 -86292165 + AT_rich Low_complexity Low_complexity 1 41 0 4 1114 365 316 93 7 chr4 69338569 69338709 -86291411 + MTD LTR MaLR 15 166 -253 4 1114 1486 269 60 64 chr4 69338629 69339114 -86291006 + MT2A LTR ERVL 51 533 0 4 1114 319 293 0 0 chr4 69339412 69339487 -86290633 - L1MD LINE L1 -883 5359 5285 4 1114 492 325 24 7 chr4 69339619 69339907 -86290213 - L1MD LINE L1 -876 5270 4978 4 1114 741 290 72 101 chr4 69339913 69340300 -86289820 - MTEa LTR MaLR 0 379 4 4 1114 1874 344 71 44 chr4 69340308 69341284 -86288836 - MTEa-int LTR MaLR -10 1570 569 4 1114 276 323 188 94 chr4 69341353 69341746 -86288374 - MTEa-int LTR MaLR -1137 443 14 4 1114 263 325 118 36 chr4 69341759 69342102 -86288018 - MTEa LTR MaLR -3 376 1 4 1114 529 296 163 48 chr4 69342167 69343137 -86286983 - L1MD LINE L1 -1198 4948 3858 4 1114 1202 230 129 24 chr4 69343256 69343635 -86286485 - MTC LTR MaLR 0 421 3 4 1114 943 209 137 30 chr4 69343781 69344043 -86286077 + Lx5 LINE L1 6665 6954 -96 4 1114 326 329 13 0 chr4 69344253 69344332 -86285788 + ID SINE ID 3 82 -142 4 1114 279 0 0 0 chr4 69344347 69344378 -86285742 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1114 1083 68 0 0 chr4 69344380 69344513 -86285607 - B1_Mus1 SINE Alu -13 135 3 5 1114 23 54 0 0 chr4 69344672 69344709 -86285411 + AT_rich Low_complexity Low_complexity 1 37 0 5 1114 232 367 94 21 chr4 69344898 69345132 -86284988 + MIRc SINE MIR 18 268 0 5 1114 362 341 94 49 chr4 69345489 69345799 -86284321 + MTEb LTR MaLR 1 338 -41 5 1114 3416 92 30 2 chr4 69345799 69346291 -86283829 + L1_Mus4 LINE L1 6080 6585 -51 5 1114 3208 312 100 50 chr4 69346375 69347811 -86282309 + MTE-int LTR MaLR 38 1545 -35 5 1114 397 328 0 78 chr4 69347800 69347942 -86282178 + ORR1D2 LTR MaLR 8 138 -232 5 1114 2100 238 16 36 chr4 69348162 69348664 -86281456 - RLTR17 LTR ERVK -96 596 105 5 1114 313 283 39 55 chr4 69348719 69348846 -86281274 + ORR1D2 LTR MaLR 249 373 -6 5 1114 207 25 75 0 chr4 69349376 69349416 -86280704 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 5 1114 805 220 22 79 chr4 69349662 69349978 -86280142 - Lx7 LINE L1 -17 7679 7382 5 1114 399 157 0 0 chr4 69350001 69350071 -86280049 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1114 333 0 0 0 chr4 69350243 69350280 -86279840 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 1114 309 246 0 0 chr4 69350296 69350365 -86279755 - Lx7 LINE L1 -453 7243 7175 5 1114 342 254 79 0 chr4 69350376 69350429 -86279691 - Lx7 LINE L1 -614 7082 7029 5 1114 387 0 0 0 chr4 69350429 69350472 -86279648 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1114 342 243 1 0 chr4 69350472 69350539 -86279581 - Lx7 LINE L1 -668 7028 6942 5 1114 218 367 12 12 chr4 69351021 69351101 -86279019 - ID4 SINE ID -3 80 1 5 1114 260 370 29 29 chr4 69351108 69351247 -86278873 - ID_B1 SINE B4 -2 222 84 5 1114 295 294 34 76 chr4 69351130 69351248 -86278872 - PB1D10 SINE Alu -3 114 2 5 1114 283 284 62 0 chr4 69352366 69352447 -86277673 + B4 SINE B4 2 87 -205 5 1114 527 96 12 0 chr4 69352448 69352531 -86277589 + (GGA)n Simple_repeat Simple_repeat 3 86 0 5 1114 438 20 0 0 chr4 69352535 69352586 -86277534 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 5 1114 691 264 68 0 chr4 69352586 69352734 -86277386 + B4 SINE B4 73 230 -62 5 1114 1674 68 4 0 chr4 69352735 69352986 -86277134 + Lx3_Mus LINE L1 4101 4352 -1534 5 1114 10215 104 6 16 chr4 69353690 69356399 -86273721 + Lx3_Mus LINE L1 4332 7008 -1 5 1114 285 274 0 0 chr4 69356498 69356604 -86273516 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 1114 423 325 36 18 chr4 69356888 69357054 -86273066 + MLT1J LTR MaLR 342 510 -2 5 1114 474 267 13 20 chr4 69357170 69357319 -86272801 - MER104 DNA Tc2 -1 180 33 5 1114 716 321 42 76 chr4 69358366 69358725 -86271395 - MTE2a LTR MaLR -30 389 32 5 1114 23 33 0 0 chr4 69358812 69358842 -86271278 + AT_rich Low_complexity Low_complexity 1 30 0 5 1114 212 378 0 47 chr4 69359255 69359341 -86270779 + ID4 SINE ID 2 83 0 5 1114 7931 161 21 8 chr4 69359606 69361788 -86268332 + Lx2B LINE L1 4781 7000 0 5 1114 236 288 0 0 chr4 69361946 69362005 -86268115 - MIR SINE MIR -92 170 112 5 1114 626 25 0 12 chr4 69362219 69362300 -86267820 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 1114 332 178 0 141 chr4 69363215 69363269 -86266851 - HAL1-3A_ME LINE L1 -810 2048 2006 5 1114 587 14 14 0 chr4 69363269 69363341 -86266779 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1114 332 178 0 141 chr4 69363341 69363371 -86266749 - HAL1-3A_ME LINE L1 -853 2005 1976 5 1114 290 312 68 78 chr4 69363540 69363731 -86266389 + MIRb SINE MIR 80 268 0 5 1114 616 272 32 67 chr4 69363964 69364279 -86265841 + L1MA10 LINE L1 6031 6334 0 5 1114 885 317 37 40 chr4 69364947 69365272 -86264848 + MLT1A0 LTR MaLR 1 324 -41 5 1114 411 358 101 57 chr4 69365590 69365907 -86264213 + MLT1A0 LTR MaLR 350 680 0 5 1114 372 387 58 43 chr4 69366330 69366608 -86263512 + MLT1M LTR MaLR 170 451 -221 5 1114 527 353 20 45 chr4 69367320 69367566 -86262554 + B4A SINE B4 53 292 0 5 1114 25 31 0 0 chr4 69367627 69367659 -86262461 + AT_rich Low_complexity Low_complexity 1 32 0 5 1114 2715 118 18 25 chr4 69368099 69368542 -86261578 + L1_Mus4 LINE L1 6195 6634 -2 5 1114 33705 37 0 0 chr4 69368664 69373892 -86256228 + L1Md_T LINE L1 265 5589 -297 5 1114 8963 7 0 2 chr4 69373892 69374890 -86255230 + L1Md_T LINE L1 5590 6585 0 5 1114 190 246 69 17 chr4 69375050 69375108 -86255012 + MIR SINE MIR 19 79 -129 5 1114 36184 31 2 0 chr4 69375751 69383046 -86247074 - L1Md_T LINE L1 0 6585 1 5 1114 22 0 0 0 chr4 69383236 69383258 -86246862 + AT_rich Low_complexity Low_complexity 1 22 0 5 1114 407 362 62 5 chr4 69383576 69383784 -86246336 - MIR SINE MIR -24 238 19 5 1114 270 0 0 0 chr4 69384077 69384107 -86246013 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1114 2394 113 152 23 chr4 69384339 69384766 -86245354 - RLTR45 LTR ERVK 0 482 1 5 1114 930 295 29 8 chr4 69384961 69385200 -86244920 - MTD LTR MaLR -8 411 168 5 1114 13870 196 53 52 chr4 69385200 69386696 -86243424 + L1_Mur2 LINE L1 1530 3057 -2820 5 1114 333 0 0 0 chr4 69386696 69386733 -86243387 + (ATG)n Simple_repeat Simple_repeat 2 38 0 5 1114 13870 196 53 52 chr4 69386733 69389189 -86240931 + L1_Mur2 LINE L1 3058 5484 -393 5 1114 8383 150 62 41 chr4 69389186 69390927 -86239193 - L1_Mur2 LINE L1 -1859 4018 2242 5 1114 1227 225 27 24 chr4 69390925 69391257 -86238863 - L1_Mur2 LINE L1 -5847 1239 907 5 1114 649 312 52 33 chr4 69391803 69392075 -86238045 + B4A SINE B4 2 278 -14 5 1114 23899 159 14 50 chr4 69392696 69395404 -86234716 + L1_Mus3 LINE L1 545 3271 -3367 5 1114 1565 66 18 8 chr4 69395404 69395692 -86234428 - MTA_Mm LTR MaLR 0 400 3 5 1114 23899 159 14 50 chr4 69395692 69399018 -86231102 + L1_Mus3 LINE L1 3272 6622 -16 5 1114 5196 100 62 3 chr4 69398994 69399748 -86230372 + L1_Mus4 LINE L1 5813 6611 -25 5 1114 225 321 45 54 chr4 69399903 69400015 -86230105 - MLT1J2 LTR MaLR -237 211 101 5 1114 441 308 62 33 chr4 69400423 69400665 -86229455 + MamGypLTR2c LTR Gypsy 819 1067 -1 5 1114 234 0 0 0 chr4 69401120 69401146 -86228974 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1114 260 415 17 23 chr4 69401756 69401931 -86228189 - MIRb SINE MIR -39 229 56 5 1114 244 282 0 0 chr4 69402406 69402477 -86227643 + GA-rich Low_complexity Low_complexity 2 72 0 5 1114 468 0 0 0 chr4 69402703 69402755 -86227365 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1114 278 336 9 0 chr4 69403539 69403655 -86226465 + CT-rich Low_complexity Low_complexity 2 118 0 5 1114 857 284 45 52 chr4 69403679 69403969 -86226151 - B4 SINE B4 -4 288 1 5 1114 436 184 171 26 chr4 69404500 69404617 -86225503 + MIRc SINE MIR 39 172 -96 5 1114 724 333 69 13 chr4 69404743 69404974 -86225146 + B4A SINE B4 43 286 -6 5 1114 270 0 0 0 chr4 69404987 69405017 -86225103 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1114 197 333 30 79 chr4 69405262 69405363 -86224757 - MIRc SINE MIR -129 139 44 5 1114 549 80 0 0 chr4 69407771 69407846 -86222274 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1114 369 0 0 0 chr4 69408516 69408557 -86221563 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1114 519 241 41 35 chr4 69409176 69409348 -86220772 + Lx4B LINE L1 6865 7037 -21 5 1114 192 77 0 0 chr4 69409348 69409374 -86220746 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1114 216 0 0 0 chr4 69409592 69409616 -86220504 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1114 196 355 18 18 chr4 69409717 69409826 -86220294 + MIRb SINE MIR 121 229 -39 5 1114 218 231 304 36 chr4 69410430 69410542 -86219578 + MIR SINE MIR 14 155 -107 5 1114 520 289 50 31 chr4 69410724 69410885 -86219235 + MER58A DNA MER1_type 1 164 -60 5 1114 215 278 0 0 chr4 69412834 69412888 -86217232 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1114 252 278 0 0 chr4 69413559 69413613 -86216507 + polypyrimidine Low_complexity Low_complexity 2 55 0 5 1114 209 246 0 0 chr4 69413719 69413768 -86216352 + CT-rich Low_complexity Low_complexity 11 59 0 5 1114 333 0 0 0 chr4 69413768 69413805 -86216315 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 1114 207 348 96 0 chr4 69413953 69414068 -86216052 + L4 LINE RTE 394 519 -1510 5 1114 213 189 0 0 chr4 69414070 69414107 -86216013 + CT-rich Low_complexity Low_complexity 1 37 0 5 1114 471 337 130 41 chr4 69414436 69414705 -86215415 + MLT1D LTR MaLR 170 462 -43 5 1114 215 243 0 0 chr4 69415537 69415574 -86214546 + PB1D10 SINE Alu 72 108 -9 5 1114 195 42 0 0 chr4 69415634 69415658 -86214462 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1114 213 39 0 0 chr4 69415893 69415919 -86214201 + (TTA)n Simple_repeat Simple_repeat 3 28 0 5 1114 315 365 70 15 chr4 69416407 69416607 -86213513 + MIR SINE MIR 51 261 -1 5 1114 423 56 0 0 chr4 69417188 69417242 -86212878 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1114 776 299 74 67 chr4 69417611 69417880 -86212240 + B4 SINE B4 2 272 -20 5 1114 369 0 0 0 chr4 69417884 69417925 -86212195 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1114 1170 86 0 0 chr4 69418240 69418380 -86211740 + B1_Mus1 SINE Alu 3 142 -6 5 1114 290 45 0 22 chr4 69418380 69418425 -86211695 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1114 644 282 131 55 chr4 69418728 69419268 -86210852 + RMER13A LTR ERVK 183 789 -119 5 1114 542 302 18 48 chr4 69419752 69419919 -86210201 + RSINE1 SINE B4 2 163 -2 5 1114 500 327 31 0 chr4 69419984 69420143 -86209977 + RSINE1 SINE B4 2 165 0 5 1114 355 311 79 30 chr4 69420276 69420478 -86209642 + MER20B DNA MER1_type 166 377 -406 5 1114 264 328 80 31 chr4 69422153 69422349 -86207771 - MIRb SINE MIR -57 211 6 5 1114 3019 196 43 51 chr4 69423554 69424201 -86205919 + RLTR26 LTR ERVK 1 642 0 5 1114 310 303 225 45 chr4 69424996 69425262 -86204858 - MLT1B LTR MaLR -73 317 4 5 1114 1250 64 0 0 chr4 69425757 69425898 -86204222 + B1_Mm SINE Alu 1 141 -6 5 1114 1076 119 11 0 chr4 69425900 69426076 -86204044 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 1114 765 76 0 0 chr4 69426083 69426188 -86203932 + (GAAAA)n Simple_repeat Simple_repeat 5 109 0 5 1114 212 86 29 0 chr4 69426574 69426609 -86203511 + (GGA)n Simple_repeat Simple_repeat 2 37 0 5 1114 903 269 104 86 chr4 69427826 69428164 -86201956 - ORR1E LTR MaLR -15 344 1 6 1114 209 304 0 0 chr4 69428167 69428223 -86201897 - MIRc SINE MIR -147 121 66 6 1114 217 174 65 0 chr4 69428482 69428528 -86201592 + L2c LINE L2 3323 3371 -16 6 1114 225 162 0 0 chr4 69428495 69428532 -86201588 + MIRb SINE MIR 224 260 -8 6 1114 182 319 28 0 chr4 69428588 69428660 -86201460 - L2c LINE L2 -46 3341 3268 6 1114 467 333 7 50 chr4 69428781 69428920 -86201200 - RSINE1 SINE B4 -24 141 9 6 1114 207 290 74 21 chr4 69429193 69429288 -86200832 - MIRm SINE MIR -111 165 66 6 1114 1191 99 0 0 chr4 69429535 69429707 -86200413 + (GA)n Simple_repeat Simple_repeat 2 173 0 6 1114 192 268 0 18 chr4 69431391 69431448 -86198672 - MIRc SINE MIR -131 137 82 6 1114 240 35 0 0 chr4 69431655 69431684 -86198436 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1114 321 26 0 0 chr4 69434233 69434271 -86195849 + (TTA)n Simple_repeat Simple_repeat 2 39 0 6 1114 2548 113 10 5 chr4 69434271 69434655 -86195465 - L1_Mus3 LINE L1 -22 6616 6231 6 1114 21 0 0 0 chr4 69434671 69434692 -86195428 + AT_rich Low_complexity Low_complexity 1 21 0 6 1114 354 245 135 19 chr4 69434708 69434812 -86195308 - B3A SINE B2 -82 116 1 6 1114 383 0 0 21 chr4 69435812 69435860 -86194260 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1114 256 402 86 11 chr4 69436053 69436403 -86193717 - L2 LINE L2 -546 2873 2498 6 1114 660 219 129 50 chr4 69436751 69436953 -86193167 + ID_B1 SINE B4 5 222 -2 6 1114 426 164 46 23 chr4 69436976 69437107 -86193013 + GA-rich Low_complexity Low_complexity 2 135 0 6 1114 366 330 67 14 chr4 69438749 69438958 -86191162 + MIR SINE MIR 8 227 -35 6 1114 333 311 23 111 chr4 69439147 69439364 -86190756 + MLT1C LTR MaLR 81 278 -189 6 1114 317 94 0 36 chr4 69439978 69440033 -86190087 + (GGGAGA)n Simple_repeat Simple_repeat 1 53 0 6 1114 225 284 0 0 chr4 69440035 69440102 -86190018 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1114 11298 22 1 0 chr4 69443610 69444901 -86185219 + L1Md_T LINE L1 4294 5586 -297 6 1114 8913 35 1 0 chr4 69444902 69445894 -86184226 + L1Md_T LINE L1 5588 6580 -2 6 1114 225 285 12 4 chr4 69446192 69446273 -86183847 - L2c LINE L2 -188 3187 3105 6 1114 35953 49 1 3 chr4 69447921 69453307 -86176813 + L1Md_T LINE L1 123 5589 -297 6 1114 8980 35 0 0 chr4 69453307 69454303 -86175817 + L1Md_T LINE L1 5590 6585 0 6 1114 724 252 154 135 chr4 69454818 69455189 -86174931 - MTE2a LTR MaLR -1 378 1 6 1114 1325 179 9 0 chr4 69455534 69455758 -86174362 + URR1A DNA MER1_type 1 226 0 6 1114 224 79 0 50 chr4 69456688 69456728 -86173392 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1114 387 0 0 0 chr4 69456947 69456990 -86173130 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1114 346 331 24 61 chr4 69457883 69458047 -86172073 + MIRb SINE MIR 103 260 -8 6 1114 203 272 100 80 chr4 69458255 69458355 -86171765 - L2c LINE L2 -17 3370 3269 6 1114 1319 42 12 0 chr4 69458471 69458675 -86171445 + L1Md_F2 LINE L1 6393 6582 0 6 1114 12422 58 2 0 chr4 69460107 69462352 -86167768 - L1Md_F2 LINE L1 -2 6580 4333 6 1114 573 222 26 0 chr4 69462364 69462481 -86167639 + MLT1A1 LTR MaLR 277 396 -12 6 1114 1894 148 74 0 chr4 69462631 69462929 -86167191 + ORR1A2 LTR MaLR 5 324 -3 6 1114 28231 5 0 0 chr4 69462929 69466047 -86164073 - L1Md_A LINE L1 -15 5868 2751 6 1114 6580 4 0 0 chr4 69466047 69466733 -86163387 + L1Md_A LINE L1 5897 6582 0 6 1114 291 309 113 7 chr4 69467572 69467722 -86162398 + MIRb SINE MIR 80 245 -23 6 1115 209 325 100 49 chr4 69468265 69468419 -86161701 - MIRb SINE MIR -81 187 24 6 1115 2251 72 32 3 chr4 69468484 69468792 -86161328 + IAPLTR2b LTR ERVK 1 317 -10 6 1115 186 43 0 0 chr4 69469314 69469337 -86160783 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1115 3225 158 2 12 chr4 69469346 69469865 -86160255 - Lx LINE L1 -2 6652 6139 6 1115 24 0 0 0 chr4 69470742 69470766 -86159354 + AT_rich Low_complexity Low_complexity 1 24 0 6 1115 253 294 0 52 chr4 69470948 69471045 -86159075 + GA-rich Low_complexity Low_complexity 1 92 0 6 1115 217 328 82 30 chr4 69471637 69471772 -86158348 - MIR SINE MIR -6 262 118 6 1115 180 111 0 0 chr4 69472031 69472058 -86158062 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1115 432 0 0 0 chr4 69472720 69472768 -86157352 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1115 216 0 0 0 chr4 69472791 69472815 -86157305 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1115 872 303 75 39 chr4 69472913 69473353 -86156767 - MLT1C LTR MaLR -2 465 10 6 1115 728 231 0 0 chr4 69474099 69474229 -86155891 + B3 SINE B2 1 130 -86 6 1115 28 0 0 0 chr4 69474237 69474265 -86155855 + AT_rich Low_complexity Low_complexity 1 28 0 6 1115 219 200 20 0 chr4 69475896 69475946 -86154174 + (TTA)n Simple_repeat Simple_repeat 2 52 0 6 1115 876 294 42 23 chr4 69476231 69476659 -86153461 - L1MA4 LINE L1 -380 5920 5484 6 1115 317 268 56 0 chr4 69476693 69476835 -86153285 + Lx9 LINE L1 7495 7644 0 6 1115 240 323 20 30 chr4 69476891 69476990 -86153130 - B4 SINE B4 -194 98 1 6 1115 402 21 0 0 chr4 69477015 69477062 -86153058 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1115 267 31 0 0 chr4 69477391 69477423 -86152697 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1115 469 289 78 32 chr4 69478419 69478644 -86151476 - L1MA4 LINE L1 -390 5910 5700 6 1115 1174 95 0 0 chr4 69478644 69478791 -86151329 + B1_Mus1 SINE Alu 1 147 -1 6 1115 322 373 50 13 chr4 69479080 69479319 -86150801 - L1M5 LINE L1 -2949 3197 2950 6 1115 180 182 0 0 chr4 69479473 69479517 -86150603 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1115 850 278 19 90 chr4 69479519 69479831 -86150289 - B4A SINE B4 -2 290 1 6 1115 1954 267 25 46 chr4 69479846 69480504 -86149616 - Lx5 LINE L1 -5 7045 6455 6 1115 2915 247 49 26 chr4 69480509 69481313 -86148807 + Lx5 LINE L1 5672 6711 -749 6 1115 341 223 17 26 chr4 69481408 69481523 -86148597 - Lx9 LINE L1 0 7644 7531 6 1115 357 256 22 8 chr4 69481627 69481761 -86148359 + Lx9 LINE L1 7360 7495 -149 6 1115 240 255 40 10 chr4 69481818 69481917 -86148203 - Lx5 LINE L1 -949 6101 6000 6 1115 656 270 231 15 chr4 69482010 69482270 -86147850 - ORR1D1 LTR MaLR -58 316 1 6 1115 185 35 69 0 chr4 69482328 69482357 -86147763 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1115 2480 158 78 68 chr4 69483021 69483523 -86146597 + LTRIS4 LTR ERV1 1 507 0 6 1115 439 226 28 47 chr4 69484028 69484135 -86145985 + MT2B LTR ERVL 160 264 -337 6 1115 893 87 79 0 chr4 69484043 69484170 -86145950 + B1_Mus2 SINE Alu 11 147 0 6 1115 213 62 62 0 chr4 69484170 69484218 -86145902 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 6 1115 624 48 0 0 chr4 69484218 69484302 -86145818 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1115 299 320 0 67 chr4 69484305 69484362 -86145758 - MLT1E LTR MaLR -207 446 391 6 1115 375 60 0 0 chr4 69484362 69484412 -86145708 + (CTG)n Simple_repeat Simple_repeat 1 50 0 6 1115 299 320 0 67 chr4 69484412 69484458 -86145662 - MLT1E LTR MaLR -263 390 351 6 1115 375 206 27 0 chr4 69484769 69484842 -86145278 + ID_B1 SINE B4 145 219 -5 6 1115 546 285 324 0 chr4 69485949 69486140 -86143980 + B4 SINE B4 1 253 -39 6 1115 306 0 0 0 chr4 69486162 69486196 -86143924 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1115 510 131 0 0 chr4 69486196 69486295 -86143825 + (GA)n Simple_repeat Simple_repeat 1 99 0 6 1115 462 320 99 78 chr4 69486572 69486985 -86143135 - MER90a LTR ERV1 0 614 193 6 1115 261 317 137 50 chr4 69487514 69487733 -86142387 - ORR1E LTR MaLR -121 238 1 6 1115 4533 66 29 7 chr4 69488252 69488800 -86141320 - LTRIS2 LTR ERV1 0 564 5 6 1115 261 128 0 0 chr4 69488830 69488869 -86141251 + ORR1C2 LTR MaLR 1 39 -345 6 1115 1497 0 0 12 chr4 69488884 69489088 -86141032 + L1Md_T LINE L1 6416 6582 0 6 1115 279 0 0 0 chr4 69489104 69489135 -86140985 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1115 1176 221 65 22 chr4 69489135 69489212 -86140908 + ORR1C2 LTR MaLR 95 174 -210 6 1115 873 29 0 0 chr4 69489212 69489316 -86140804 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1115 1176 221 65 22 chr4 69489316 69489516 -86140604 + ORR1C2 LTR MaLR 175 384 0 6 1115 8522 72 4 4 chr4 69489585 69491367 -86138753 - L1Md_F2 LINE L1 -4 6578 4799 6 1115 767 343 43 4 chr4 69491572 69491850 -86138270 - B4A SINE B4 0 292 4 6 1115 713 271 193 30 chr4 69492172 69492602 -86137518 - MLT1D LTR MaLR 0 505 6 6 1115 1129 283 21 28 chr4 69493479 69493766 -86136354 + B4 SINE B4 8 292 0 6 1115 408 55 0 0 chr4 69493792 69493847 -86136273 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1115 181 0 33 33 chr4 69493879 69493909 -86136211 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1115 1150 73 0 0 chr4 69493917 69494053 -86136067 - B1_Mus1 SINE Alu -12 136 1 6 1115 935 189 76 5 chr4 69494464 69494661 -86135459 + URR1A DNA MER1_type 1 211 -15 6 1115 6761 112 48 12 chr4 69494732 69495791 -86134329 + Lx LINE L1 5584 6650 -4 6 1115 220 136 0 22 chr4 69495798 69495843 -86134277 + T-rich Low_complexity Low_complexity 4 47 0 6 1115 896 267 53 88 chr4 69496113 69496743 -86133377 - L1MA9 LINE L1 -10 6324 5720 6 1115 237 265 0 42 chr4 69496817 69496888 -86133232 - MLT1H LTR MaLR -18 531 464 6 1115 183 80 0 0 chr4 69497138 69497163 -86132957 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1115 198 0 0 0 chr4 69497183 69497205 -86132915 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 6 1115 3015 38 2 82 chr4 69497207 69497611 -86132509 - L1Md_F2 LINE L1 -12 6570 6199 6 1115 210 171 0 0 chr4 69498571 69498606 -86131514 - L2b LINE L2 -16 3359 3325 7 1115 1062 269 26 140 chr4 69498655 69499083 -86131037 + MTE2a LTR MaLR 1 379 0 7 1115 432 327 33 7 chr4 69499116 69499267 -86130853 + MIR SINE MIR 107 261 -1 7 1115 275 311 61 21 chr4 69499274 69499428 -86130692 - MIRb SINE MIR -67 201 41 7 1115 310 346 38 8 chr4 69500633 69500764 -86129356 + MER58A DNA MER1_type 78 212 -12 1 1115 423 0 0 0 chr4 69500814 69500861 -86129259 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1115 339 25 0 0 chr4 69501540 69501580 -86128540 + (TATG)n Simple_repeat Simple_repeat 1 40 0 3 1115 501 360 0 0 chr4 69501727 69501866 -86128254 - B4 SINE B4 -153 139 1 4 1115 300 53 0 0 chr4 69502190 69502228 -86127892 + (CATA)n Simple_repeat Simple_repeat 1 38 0 5 1115 528 129 0 0 chr4 69502256 69502357 -86127763 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 1115 209 345 94 34 chr4 69502586 69502703 -86127417 + MIRb SINE MIR 131 254 -14 7 1115 263 314 47 0 chr4 69505079 69505165 -86124955 - B1F1 SINE Alu -58 91 2 8 1115 253 318 0 23 chr4 69505093 69505180 -86124940 - ID_B1 SINE B4 -70 154 70 9 1115 3973 211 38 4 chr4 69506152 69506942 -86123178 + Lx5 LINE L1 6123 6916 -134 1 1115 259 333 0 0 chr4 69507137 69507212 -86122908 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1115 305 321 62 31 chr4 69507525 69507686 -86122434 + LTR79 LTR ERVL 1 166 -361 1 1115 702 342 37 45 chr4 69507841 69508196 -86121924 + ORR1E LTR MaLR 3 354 -5 1 1115 1937 194 78 28 chr4 69508281 69508706 -86121414 - RLTR41 LTR ERV1 0 446 1 1 1115 951 27 26 26 chr4 69509979 69510132 -86119988 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 1 1115 385 355 40 0 chr4 69510228 69510380 -86119740 + LTR85a LTR Gypsy? 538 695 -7 1 1115 1094 251 78 107 chr4 69510691 69511075 -86119045 - MTE2a LTR MaLR 0 379 7 1 1115 344 336 110 7 chr4 69511521 69511770 -86118350 + MIR SINE MIR 3 260 -2 1 1115 393 290 107 25 chr4 69511885 69512115 -86118005 + MER2 DNA MER2_type 89 339 -6 1 1115 1060 247 12 4 chr4 69512358 69512610 -86117510 - MER121 Unknown Unknown -71 341 88 2 1115 358 294 11 0 chr4 69512744 69512836 -86117284 + ID_B1 SINE B4 79 171 -53 2 1115 391 141 99 0 chr4 69512982 69513053 -86117067 - MTE2b LTR MaLR -3 376 299 2 1115 614 279 0 24 chr4 69513062 69513227 -86116893 + RSINE1 SINE B4 3 163 -2 2 1115 332 380 43 28 chr4 69513287 69513428 -86116692 + MLT1J1 LTR MaLR 158 300 -144 2 1115 221 320 159 47 chr4 69513665 69513966 -86116154 - L2c LINE L2 0 3387 3053 2 1115 442 288 113 5 chr4 69514517 69514702 -86115418 - MLT1D LTR MaLR -4 501 297 2 1115 606 136 8 63 chr4 69516123 69516249 -86113871 - PB1D9 SINE Alu -1 119 1 2 1115 236 245 24 165 chr4 69516339 69516466 -86113654 + MT2B LTR ERVL 156 264 -337 2 1115 594 156 40 61 chr4 69516355 69516495 -86113625 + B1_Mus2 SINE Alu 3 143 -6 2 1115 1204 68 0 20 chr4 69516495 69516645 -86113475 + B1_Mm SINE Alu 1 147 0 3 1115 205 152 0 0 chr4 69517035 69517068 -86113052 + G-rich Low_complexity Low_complexity 1 33 0 3 1115 434 328 102 43 chr4 69517112 69517533 -86112587 + MLT1H LTR MaLR 33 548 -1 3 1115 473 358 119 4 chr4 69517609 69517870 -86112250 + B4 SINE B4 2 292 0 3 1115 252 186 0 0 chr4 69517879 69517938 -86112182 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1115 414 302 28 28 chr4 69518532 69518675 -86111445 - ID_B1 SINE B4 -2 222 80 3 1115 256 94 38 0 chr4 69518739 69518792 -86111328 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1115 8738 118 41 0 chr4 69519368 69520658 -86109462 - Lx2 LINE L1 0 6997 5655 3 1115 1241 263 91 41 chr4 69520705 69521169 -86108951 - Lx8 LINE L1 0 7473 6987 3 1115 569 315 5 48 chr4 69521977 69522164 -86107956 + MTEa LTR MaLR 3 181 -198 3 1115 328 295 88 9 chr4 69522197 69522310 -86107810 + MTEa LTR MaLR 258 379 0 3 1115 321 219 0 0 chr4 69522326 69522399 -86107721 + (CATA)n Simple_repeat Simple_repeat 4 76 0 4 1115 223 321 81 86 chr4 69522459 69522633 -86107487 + L2 LINE L2 2752 2924 -495 4 1115 2304 101 35 9 chr4 69522798 69523117 -86107003 + ORR1A2 LTR MaLR 1 327 0 4 1115 897 90 7 20 chr4 69523678 69523826 -86106294 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 4 1115 536 354 43 91 chr4 69524189 69524587 -86105533 - MER31A LTR ERV1 -29 456 78 4 1115 6765 67 0 4 chr4 69524604 69525574 -86104546 - L1Md_F2 LINE L1 -595 5987 5024 4 1115 4944 64 3 3 chr4 69525575 69526167 -86103953 + L1Md_F2 LINE L1 5988 6579 -3 4 1115 6614 175 44 19 chr4 69526270 69528516 -86101604 + Lx2B LINE L1 4695 6996 -4 4 1115 189 74 0 0 chr4 69529818 69529845 -86100275 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1115 212 200 165 114 chr4 69529969 69530048 -86100072 - B4 SINE B4 -208 84 2 4 1115 214 330 39 127 chr4 69530326 69530531 -86099589 + MIR3 SINE MIR 16 202 -6 4 1115 456 51 0 0 chr4 69531310 69531369 -86098751 + (TAG)n Simple_repeat Simple_repeat 1 59 0 5 1115 189 258 0 0 chr4 69531390 69531438 -86098682 - MIRc SINE MIR -112 156 105 5 1115 2370 70 15 62 chr4 69532568 69532905 -86097215 - L1_Mus2 LINE L1 0 6566 6246 5 1115 1247 27 0 0 chr4 69532905 69533053 -86097067 + L1_Mus2 LINE L1 5818 5965 -601 5 1115 11938 52 11 3 chr4 69533338 69534824 -86095296 + L1Md_F2 LINE L1 4089 5586 -297 5 1115 8380 55 3 3 chr4 69534824 69535818 -86094302 + L1Md_F2 LINE L1 5587 6580 -2 5 1115 35 24 0 0 chr4 69535835 69535877 -86094243 + AT_rich Low_complexity Low_complexity 1 42 0 5 1115 1818 184 10 83 chr4 69535900 69536308 -86093812 - ORR1C1 LTR MaLR 0 378 1 5 1115 576 338 105 8 chr4 69536356 69536595 -86093525 + B4 SINE B4 26 287 -5 5 1115 195 192 41 0 chr4 69536647 69536720 -86093400 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 5 1115 3078 100 5 9 chr4 69536840 69537263 -86092857 + BGLII LTR ERVK 1 421 0 5 1115 332 254 106 3 chr4 69537653 69537776 -86092344 + L2b LINE L2 3289 3424 -2 6 1115 338 340 165 49 chr4 69538593 69539041 -86091079 - L2a LINE L2 0 3426 2927 6 1115 235 369 148 16 chr4 69540035 69540217 -86089903 + MIRb SINE MIR 3 208 -60 6 1115 374 262 33 33 chr4 69540291 69540441 -86089679 - L1MB1 LINE L1 0 6168 6019 6 1115 627 250 69 5 chr4 69540791 69541004 -86089116 - L1MB1 LINE L1 -162 6027 5791 6 1115 221 180 0 62 chr4 69541223 69541288 -86088832 + T-rich Low_complexity Low_complexity 3 63 0 6 1115 1758 202 45 14 chr4 69541373 69541729 -86088391 - ORR1B2 LTR MaLR 0 367 1 6 1115 283 240 83 37 chr4 69541875 69541983 -86088137 - BC1_Mm scRNA scRNA -37 115 3 6 1115 470 329 7 7 chr4 69542049 69542193 -86087927 - ID_B1 SINE B4 0 224 81 6 1115 528 77 0 0 chr4 69542256 69542334 -86087786 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1115 716 233 8 142 chr4 69542434 69542674 -86087446 + B3 SINE B2 1 208 -8 6 1115 32 43 0 0 chr4 69542676 69542722 -86087398 + AT_rich Low_complexity Low_complexity 1 46 0 7 1115 403 202 31 78 chr4 69542753 69542882 -86087238 - L1M2 LINE L1 -505 5786 5664 7 1115 1271 222 47 65 chr4 69542832 69543129 -86086991 + L1M3 LINE L1 4863 5160 -980 7 1115 946 78 261 0 chr4 69543129 69543282 -86086838 + B2_Mm2 SINE B2 2 194 -1 7 1115 1271 222 47 65 chr4 69543282 69543432 -86086688 + L1M3 LINE L1 5161 5302 -838 7 1115 739 361 4 53 chr4 69543468 69543749 -86086371 + B4 SINE B4 24 290 -2 7 1115 554 299 115 11 chr4 69543792 69544112 -86086008 + L1M3 LINE L1 5321 5671 -500 7 1115 195 350 74 41 chr4 69544170 69544292 -86085828 + MIR3 SINE MIR 41 166 -42 7 1115 234 228 0 34 chr4 69544987 69545046 -86085074 + B3A SINE B2 1 57 -141 7 1115 409 301 24 16 chr4 69545084 69545209 -86084911 + B4A SINE B4 2 127 -165 7 1115 199 344 32 21 chr4 69546148 69546243 -86083877 + MIRc SINE MIR 40 135 -133 7 1115 1560 68 16 5 chr4 69547031 69547223 -86082897 - B2_Mm2 SINE B2 -1 194 1 7 1115 219 167 0 0 chr4 69548154 69548196 -86081924 + (ATG)n Simple_repeat Simple_repeat 2 43 0 8 1115 3145 220 76 63 chr4 69548212 69549090 -86081030 - RMER19B LTR ERVK -12 890 1 8 1115 365 308 85 15 chr4 69549145 69549346 -86080774 - HAL1-2a_MD LINE L1 -494 2530 2316 8 1115 184 326 30 40 chr4 69549749 69549848 -86080272 + L3 LINE CR1 4281 4378 -111 8 1115 4089 43 0 0 chr4 69549900 69550362 -86079758 - L1Md_T LINE L1 -2 6580 6119 8 1115 1090 289 41 82 chr4 69550362 69550751 -86079369 + MTE2a LTR MaLR 3 375 -4 8 1115 465 103 0 0 chr4 69550858 69550926 -86079194 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1115 320 344 63 63 chr4 69551681 69551994 -86078126 - L2a LINE L2 -20 3406 3114 8 1115 540 332 86 49 chr4 69552409 69552757 -86077363 + MTD LTR MaLR 1 361 -58 8 1115 255 337 20 0 chr4 69552808 69552906 -86077214 + L2c LINE L2 3267 3366 -21 8 1115 417 342 38 5 chr4 69553046 69553231 -86076889 - MIRb SINE MIR -77 191 1 9 1115 468 48 0 0 chr4 69553232 69553295 -86076825 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1115 248 222 207 33 chr4 69553797 69553918 -86076202 - MIRb SINE MIR -37 231 90 9 1115 710 277 62 25 chr4 69554685 69554959 -86075161 + RMER5 LTR ERV1 1 284 -250 9 1115 942 297 103 42 chr4 69555181 69555638 -86074482 + RMER5 LTR ERV1 45 529 -5 9 1115 200 343 54 36 chr4 69556468 69556580 -86073540 + MIRb SINE MIR 38 151 -117 9 1115 689 302 97 50 chr4 69557023 69557281 -86072839 + B4 SINE B4 1 270 -22 9 1115 277 330 149 32 chr4 69557702 69557890 -86072230 - LTR33 LTR ERVL -301 214 5 9 1115 537 16 0 0 chr4 69558411 69558473 -86071647 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1115 1381 226 95 19 chr4 69558631 69558956 -86071164 + ORR1C1 LTR MaLR 21 370 -14 9 1115 417 229 15 69 chr4 69559167 69559298 -86070822 - MTD LTR MaLR -295 124 1 1 1115 187 295 124 62 chr4 69559638 69559815 -86070305 + L3 LINE CR1 4118 4305 -184 1 1115 324 311 114 22 chr4 69560628 69560812 -86069308 - LTR16C LTR ERVL 0 489 289 1 1115 2210 199 80 11 chr4 69561208 69562077 -86068043 + Lx5 LINE L1 6005 7050 0 1 1115 334 268 21 0 chr4 69562078 69562175 -86067945 + MIR SINE MIR 136 234 -28 1 1115 297 321 7 1 chr4 69562502 69562644 -86067476 + MIR SINE MIR 19 162 -106 1 1115 185 0 40 0 chr4 69563581 69563606 -86066514 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1115 411 323 46 0 chr4 69563649 69563779 -86066341 - B1F SINE Alu -1 148 13 1 1115 349 293 38 8 chr4 69563920 69564046 -86066074 + MLT2B2 LTR ERVL 374 502 -54 1 1115 1263 279 56 14 chr4 69564753 69565113 -86065007 + MTE2a LTR MaLR 1 375 -4 1 1115 286 388 33 47 chr4 69565113 69565324 -86064796 + LTR16E2 LTR ERVL 308 515 -53 1 1115 254 334 73 0 chr4 69565351 69565489 -86064631 + MIRb SINE MIR 110 251 -11 1 1115 608 293 82 18 chr4 69566182 69566346 -86063774 - B3 SINE B2 -5 211 37 1 1115 3862 134 66 46 chr4 69566346 69567152 -86062968 - RLTR13D2 LTR ERVK 0 1023 1 1 1115 1854 188 45 0 chr4 69567231 69567567 -86062553 - Lx2 LINE L1 -1 6996 6646 1 1115 231 347 50 81 chr4 69567849 69568009 -86062111 - MIR3 SINE MIR -17 191 37 1 1115 2685 35 64 96 chr4 69569607 69569984 -86060136 - RLTR10B2 LTR ERVK 0 365 1 1 1115 224 0 65 0 chr4 69570750 69570781 -86059339 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1115 277 231 16 35 chr4 69571135 69571206 -86058914 - ID4 SINE ID -76 76 8 1 1115 1150 75 0 40 chr4 69571549 69571701 -86058419 + B1_Mus1 SINE Alu 1 146 -2 1 1115 306 73 0 0 chr4 69571701 69571742 -86058378 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1115 328 259 245 143 chr4 69572571 69572787 -86057333 + B4 SINE B4 41 278 -14 1 1115 456 51 0 0 chr4 69572790 69572849 -86057271 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1115 415 294 118 44 chr4 69572915 69573143 -86056977 + Lx8 LINE L1 7229 7473 0 1 1115 399 321 65 32 chr4 69574060 69574276 -86055844 - L2 LINE L2 -646 2773 2551 1 1115 390 258 10 40 chr4 69574326 69574427 -86055693 - MTEb LTR MaLR -277 102 5 1 1115 1032 146 0 0 chr4 69574502 69574666 -86055454 + L1Md_Gf LINE L1 78 241 -6281 1 1115 227 316 59 59 chr4 69574675 69574776 -86055344 + RLTR45 LTR ERVK 4 104 -378 1 1115 36146 40 0 0 chr4 69574776 69579613 -86050507 + L1Md_T LINE L1 656 5589 -297 1 1115 8991 32 0 3 chr4 69579613 69580612 -86049508 + L1Md_T LINE L1 5590 6585 0 1 1115 2155 259 89 40 chr4 69580856 69581626 -86048494 - RMER13A LTR ERVK 0 860 1 1 1115 368 295 9 0 chr4 69581982 69582087 -86048033 + MIRb SINE MIR 35 140 -128 1 1115 30 45 0 0 chr4 69582093 69582137 -86047983 + AT_rich Low_complexity Low_complexity 1 44 0 1 1115 7244 69 3 21 chr4 69582137 69583073 -86047047 - L1_Mus2 LINE L1 0 6566 5648 1 1115 247 208 19 0 chr4 69583095 69583148 -86046972 + L1MA5 LINE L1 6175 6228 -72 1 1115 1830 246 82 4 chr4 69583777 69584239 -86045881 + MT2A LTR ERVL 35 532 -1 1 1115 776 313 15 0 chr4 69584346 69584547 -86045573 + ID_B1 SINE B4 8 211 -13 1 1115 1008 25 0 0 chr4 69584547 69584666 -86045454 + (GGAGAA)n Simple_repeat Simple_repeat 4 122 0 1 1115 386 303 79 19 chr4 69585508 69585706 -86044414 + MIRb SINE MIR 31 240 -28 1 1115 222 37 0 0 chr4 69586207 69586234 -86043886 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1115 908 231 5 10 chr4 69587576 69587777 -86042343 + Lx7 LINE L1 6921 7120 -576 1 1115 1112 213 27 38 chr4 69587813 69588076 -86042044 + Lx7 LINE L1 7111 7370 -326 1 1115 10846 86 1 0 chr4 69588047 69590209 -86039911 - L1_Mus1 LINE L1 0 6567 4403 1 1115 421 231 76 30 chr4 69590222 69590458 -86039662 + Lx7 LINE L1 7344 7590 -106 1 1115 1060 112 11 11 chr4 69590479 69590659 -86039461 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1115 25 51 0 0 chr4 69590739 69590778 -86039342 + AT_rich Low_complexity Low_complexity 1 39 0 1 1115 183 243 27 0 chr4 69590785 69590822 -86039298 - MIRb SINE MIR -175 93 56 1 1115 197 284 90 51 chr4 69592105 69592183 -86037937 + MIR3 SINE MIR 110 190 -18 1 1115 27 0 0 0 chr4 69592263 69592290 -86037830 + AT_rich Low_complexity Low_complexity 1 27 0 1 1115 262 294 108 0 chr4 69592377 69592479 -86037641 - MIRb SINE MIR -122 146 31 1 1115 234 0 0 0 chr4 69592553 69592579 -86037541 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1115 389 281 134 45 chr4 69593338 69593517 -86036603 + MamGypLTR1d LTR Gypsy 605 799 -14 1 1115 614 240 20 7 chr4 69593906 69594053 -86036067 - MER5A1 DNA MER1_type -3 163 15 1 1115 334 314 38 19 chr4 69594054 69594189 -86035931 + MIRb SINE MIR 33 163 -105 1 1115 270 0 0 0 chr4 69594682 69594712 -86035408 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1115 210 227 0 0 chr4 69595081 69595125 -86034995 + L3 LINE CR1 2320 2363 -2126 1 1115 1517 237 87 16 chr4 69595253 69595631 -86034489 + MTD LTR MaLR 1 405 -14 1 1115 1051 275 149 33 chr4 69595844 69596482 -86033638 - L1MB3 LINE L1 -11 6172 5452 1 1115 361 281 58 17 chr4 69596801 69596975 -86033145 - L1MB3 LINE L1 -709 5474 5294 1 1115 498 33 0 0 chr4 69596994 69597054 -86033066 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1115 279 0 0 0 chr4 69597054 69597084 -86033036 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1115 227 333 39 0 chr4 69597305 69597383 -86032737 - B4A SINE B4 -171 121 41 1 1115 354 246 51 0 chr4 69597404 69597522 -86032598 - L1MB3 LINE L1 -814 5329 5206 1 1115 295 238 229 0 chr4 69597535 69597657 -86032463 - L1MA6 LINE L1 -7 6293 6144 1 1115 456 244 58 44 chr4 69597674 69597811 -86032309 + B1F SINE Alu 10 148 -1 1 1115 240 69 0 0 chr4 69597813 69597851 -86032269 - L1MA4A LINE L1 -157 6146 6105 1 1115 653 263 81 28 chr4 69597941 69598325 -86031795 - L1MB3 LINE L1 -936 5210 4774 1 1115 1130 257 98 69 chr4 69598640 69598987 -86031133 - MTE2b LTR MaLR -7 372 16 1 1115 195 69 0 0 chr4 69599021 69599050 -86031070 + (A)n Simple_repeat Simple_repeat 1 29 0 1 139 1896 211 84 37 chr4 69599054 69599590 -86030530 - L1MB3 LINE L1 -1560 4580 4020 1 1116 602 271 4 110 chr4 69600179 69600415 -86029705 + B3A SINE B2 6 216 0 1 1116 339 311 60 30 chr4 69600654 69600889 -86029231 + L1ME3 LINE L1 5710 5951 -211 1 1116 381 43 0 0 chr4 69601080 69601127 -86028993 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 1116 720 351 69 22 chr4 69601132 69601406 -86028714 + B4 SINE B4 6 292 0 1 1116 207 222 22 0 chr4 69601410 69601455 -86028665 + (CATA)n Simple_repeat Simple_repeat 1 46 0 1 1116 655 361 14 9 chr4 69601842 69602063 -86028057 + B4A SINE B4 65 286 -6 1 1116 748 297 40 31 chr4 69603075 69603401 -86026719 + L1MA7 LINE L1 5765 6093 -198 1 1116 556 235 86 8 chr4 69603424 69603583 -86026537 - MTD LTR MaLR -54 365 181 1 1116 265 309 0 0 chr4 69603583 69603677 -86026443 + T-rich Low_complexity Low_complexity 1 94 0 1 1116 939 6 0 118 chr4 69603681 69603885 -86026235 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1116 427 194 19 0 chr4 69603887 69603990 -86026130 + CT-rich Low_complexity Low_complexity 4 108 0 1 1116 446 230 0 0 chr4 69603995 69604082 -86026038 - B1_Mm SINE Alu -20 127 41 1 1116 4851 107 11 8 chr4 69604083 69604752 -86025368 + Lx LINE L1 5980 6650 -4 1 1116 445 266 120 79 chr4 69604758 69604974 -86025146 - MTD LTR MaLR -192 227 3 1 1116 432 277 98 14 chr4 69605595 69605738 -86024382 - MLT1B LTR MaLR -40 350 196 1 1116 382 143 26 0 chr4 69605740 69605817 -86024303 + CT-rich Low_complexity Low_complexity 2 80 0 1 1116 281 252 86 39 chr4 69605834 69605962 -86024158 - MLT1B LTR MaLR -231 134 1 1 1116 221 320 63 32 chr4 69606526 69606652 -86023468 + MIRb SINE MIR 100 229 -39 1 1116 226 260 152 9 chr4 69606869 69606974 -86023146 + MLT1E1A LTR MaLR 179 298 -382 1 1116 213 121 0 0 chr4 69607500 69607533 -86022587 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1116 230 317 49 0 chr4 69607612 69607694 -86022426 + MER103 DNA DNA 67 152 -14 1 1116 398 308 27 27 chr4 69608003 69608150 -86021970 + HAL1-2a_MD LINE L1 2345 2491 -533 1 1116 251 307 50 58 chr4 69608238 69608359 -86021761 + MIRc SINE MIR 20 139 -129 1 1116 245 362 30 52 chr4 69608524 69608658 -86021462 - MLT1C LTR MaLR -336 131 1 1 1116 230 95 0 23 chr4 69608974 69609017 -86021103 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 1 1116 847 234 18 79 chr4 69610005 69610024 -86020096 - ORR1B2 LTR MaLR -79 305 291 1 1116 760 188 0 34 chr4 69610024 69610173 -86019947 - B1_Mur3 SINE Alu -1 148 5 1 1116 1214 187 93 18 chr4 69610173 69610432 -86019688 - ORR1B2 LTR MaLR -94 290 1 1 1116 2480 156 47 100 chr4 69610860 69611356 -86018764 - RLTR31_Mm LTR ERVK 0 561 94 1 1116 655 33 22 0 chr4 69611356 69611446 -86018674 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1116 2480 156 47 100 chr4 69611446 69611541 -86018579 - RLTR31_Mm LTR ERVK -468 93 1 1 1116 1043 122 0 13 chr4 69611736 69611886 -86018234 + B1_Mus1 SINE Alu 1 148 0 1 1116 1430 251 146 5 chr4 69612854 69613223 -86016897 - MTC LTR MaLR 0 421 1 1 1116 363 304 18 0 chr4 69613742 69613854 -86016266 + CT-rich Low_complexity Low_complexity 3 116 0 1 1116 735 197 74 42 chr4 69614033 69614250 -86015870 + URR1A DNA MER1_type 3 226 0 1 1116 3275 108 13 11 chr4 69614267 69614745 -86015375 + L1_Mus4 LINE L1 6157 6635 -1 1 1116 293 343 21 14 chr4 69614852 69614997 -86015123 + L3 LINE CR1 4238 4383 -106 1 1116 351 150 0 0 chr4 69615051 69615111 -86015009 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1116 4064 74 15 7 chr4 69617689 69618235 -86011885 - L1Md_F2 LINE L1 -7 6575 6026 1 1116 196 342 93 8 chr4 69618520 69618638 -86011482 + L2b LINE L2 3028 3155 -220 1 1116 206 291 44 55 chr4 69619204 69619295 -86010825 + L3 LINE CR1 3962 4051 -438 1 1116 777 207 22 11 chr4 69619629 69619810 -86010310 + Lx LINE L1 6472 6654 0 2 1116 779 163 7 0 chr4 69619827 69619974 -86010146 + GA-rich Low_complexity Low_complexity 2 149 0 2 1116 252 218 0 0 chr4 69620071 69620126 -86009994 + MIR SINE MIR 77 131 -131 2 1116 354 98 0 0 chr4 69621888 69621939 -86008181 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 1116 619 313 20 107 chr4 69621981 69622382 -86007738 + MLT1B LTR MaLR 24 389 -1 2 1116 234 0 0 0 chr4 69622421 69622447 -86007673 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1116 802 227 157 40 chr4 69623265 69623612 -86006508 - RMER13A LTR ERVK -389 519 98 2 1116 986 240 23 96 chr4 69623956 69624301 -86005819 - RMER17A-int LTR ERVK -265 1463 1144 2 1116 200 0 0 91 chr4 69624303 69624336 -86005784 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 2 1116 195 42 0 0 chr4 69624398 69624422 -86005698 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1116 1517 39 28 0 chr4 69624469 69624650 -86005470 - B2_Mm1a SINE B2 -6 187 2 2 1116 670 88 0 101 chr4 69624650 69624789 -86005331 - L1_Mus2 LINE L1 -9 6557 6433 2 1116 1361 159 64 74 chr4 69624811 69625109 -86005011 - RMER1B Other Other -4 1062 768 2 1116 1330 254 84 48 chr4 69625262 69625655 -86004465 - RMER1B Other Other -659 407 1 2 1116 1639 241 65 31 chr4 69626139 69626709 -86003411 - RLTR26 LTR ERVK -17 625 5 2 1116 299 326 122 28 chr4 69628173 69628353 -86001767 - ID_B1 SINE B4 -19 205 9 2 1116 277 305 153 40 chr4 69628467 69628574 -86001546 - Lx8 LINE L1 -17 7456 7334 2 1116 393 22 0 0 chr4 69628574 69628620 -86001500 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 1116 277 305 153 40 chr4 69628620 69628734 -86001386 - Lx8 LINE L1 -140 7333 7210 2 1116 2570 92 78 92 chr4 69628933 69629422 -86000698 + RLTR45 LTR ERVK 1 482 0 2 1116 661 312 58 25 chr4 69630589 69630829 -85999291 + B4 SINE B4 45 292 0 2 1116 652 265 50 30 chr4 69630891 69631093 -85999027 - B3 SINE B2 -6 210 5 2 1116 227 346 0 0 chr4 69631973 69632054 -85998066 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1116 342 0 0 0 chr4 69632427 69632465 -85997655 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1116 1173 279 135 18 chr4 69632506 69632996 -85997124 - MLT1F1 LTR MaLR 0 569 23 2 1116 254 293 96 55 chr4 69633680 69633979 -85996141 - MTEb LTR MaLR -4 375 42 2 1116 183 162 0 0 chr4 69634056 69634093 -85996027 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1116 617 295 24 43 chr4 69634093 69634302 -85995818 - ORR1D2 LTR MaLR -1 369 165 2 1116 2819 46 29 0 chr4 69635661 69636010 -85994110 - L1Md_F3 LINE L1 -14 6570 6212 2 1116 270 0 0 0 chr4 69636530 69636560 -85993560 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1116 441 250 10 26 chr4 69637075 69637391 -85992729 + (TA)n Simple_repeat Simple_repeat 1 310 0 2 1116 663 242 15 8 chr4 69637395 69637557 -85992563 + B4A SINE B4 111 274 -18 2 1116 386 79 0 16 chr4 69637583 69637647 -85992473 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1116 243 0 0 0 chr4 69637886 69637913 -85992207 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1116 181 309 128 16 chr4 69638469 69638594 -85991526 - MIRb SINE MIR -19 249 111 2 1116 818 104 22 0 chr4 69638648 69638782 -85991338 + (TCTCCC)n Simple_repeat Simple_repeat 2 138 0 2 1116 516 234 75 0 chr4 69638788 69638895 -85991225 - B4A SINE B4 -18 274 160 2 1116 207 392 56 11 chr4 69639256 69639434 -85990686 - L2a LINE L2 -261 3165 2980 2 1116 22 70 0 0 chr4 69639469 69639512 -85990608 + AT_rich Low_complexity Low_complexity 1 43 0 2 1116 349 324 55 17 chr4 69639777 69639997 -85990123 + RMER20B LTR ERVK 168 419 -208 2 1116 4724 44 0 5 chr4 69640010 69640576 -85989544 - L1Md_F2 LINE L1 -3 6579 6017 2 1116 651 318 14 9 chr4 69641028 69641241 -85988879 - B4A SINE B4 -2 290 77 2 1116 432 180 27 9 chr4 69641265 69641377 -85988743 + GA-rich Low_complexity Low_complexity 3 116 0 2 1116 241 271 0 33 chr4 69642866 69642927 -85987193 + polypyrimidine Low_complexity Low_complexity 2 60 0 2 1116 228 224 0 0 chr4 69643028 69643095 -85987025 + (TTGG)n Simple_repeat Simple_repeat 4 70 0 2 1116 194 91 30 0 chr4 69644115 69644148 -85985972 + (TTC)n Simple_repeat Simple_repeat 2 35 0 2 1116 337 397 0 22 chr4 69644855 69644994 -85985126 - RSINE1 SINE B4 -22 143 8 2 1116 478 247 167 21 chr4 69645004 69645244 -85984876 + Tigger5 DNA MER2_type 2112 2386 -20 2 1116 664 372 52 0 chr4 69645336 69645661 -85984459 - MLT2B2 LTR ERVL -82 433 92 2 1116 240 316 13 0 chr4 69646487 69646563 -85983557 - ID4 SINE ID -1 82 6 2 1116 362 298 97 0 chr4 69647007 69647121 -85982999 + MLT1J2 LTR MaLR 261 385 -63 2 1116 270 56 0 0 chr4 69647177 69647213 -85982907 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1116 447 92 0 0 chr4 69647395 69647460 -85982660 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1116 386 171 36 24 chr4 69648595 69648679 -85981441 - B3A SINE B2 -75 123 39 2 1116 387 0 0 0 chr4 69648693 69648736 -85981384 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1116 284 146 0 0 chr4 69648736 69648784 -85981336 - B1_Mus2 SINE Alu -11 136 89 2 1116 340 322 59 32 chr4 69649030 69649216 -85980904 + LTR79 LTR ERVL 300 490 -37 2 1116 184 277 0 0 chr4 69649556 69649603 -85980517 + L2a LINE L2 3370 3416 -10 2 1116 184 354 87 0 chr4 69649609 69649736 -85980384 + MIRc SINE MIR 11 148 -120 2 1116 261 377 62 101 chr4 69650263 69650395 -85979725 - ID_B1 SINE B4 -5 219 109 2 1116 438 20 0 0 chr4 69650395 69650446 -85979674 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1116 261 377 62 101 chr4 69650446 69650540 -85979580 - ID_B1 SINE B4 -116 108 2 2 1116 231 368 62 49 chr4 69650958 69651184 -85978936 - RMER15 LTR ERVL 0 575 347 2 1116 537 30 0 0 chr4 69651455 69651522 -85978598 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1116 574 328 83 21 chr4 69651530 69651770 -85978350 - B4 SINE B4 -36 256 2 2 1116 264 264 0 14 chr4 69653494 69653567 -85976553 - LTR33C LTR ERVL -523 106 35 2 1116 831 264 119 0 chr4 69654752 69654987 -85975133 + B4 SINE B4 3 265 -27 2 1116 456 123 0 0 chr4 69654987 69655060 -85975060 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1116 392 307 42 42 chr4 69655109 69655158 -85974962 - B3 SINE B2 0 216 168 2 1116 263 71 24 0 chr4 69655158 69655200 -85974920 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1116 407 232 7 7 chr4 69655200 69655293 -85974827 - B3A SINE B2 -49 167 74 2 1116 195 256 65 32 chr4 69655296 69655389 -85974731 - MIRc SINE MIR -138 130 35 2 1116 576 252 19 26 chr4 69655498 69655653 -85974467 - ID_B1 SINE B4 -66 158 5 2 1116 244 85 0 60 chr4 69655772 69655822 -85974298 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1116 345 164 0 0 chr4 69656537 69656610 -85973510 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 2 1116 212 0 36 0 chr4 69657040 69657068 -85973052 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 2 1116 246 278 0 176 chr4 69657884 69658015 -85972105 + MTEa LTR MaLR 1 108 -271 2 1116 1607 173 11 82 chr4 69658022 69658400 -85971720 + ORR1B1 LTR MaLR 41 391 -3 2 1116 639 230 127 40 chr4 69658410 69658663 -85971457 + MTEa LTR MaLR 103 377 -2 2 1116 233 299 13 13 chr4 69658674 69658752 -85971368 - MLT1J LTR MaLR -206 306 229 2 1116 192 300 10 91 chr4 69658978 69659077 -85971043 - MIR SINE MIR -73 189 99 2 1116 557 320 80 17 chr4 69661423 69661661 -85968459 + B4A SINE B4 39 291 -1 2 1116 315 0 0 0 chr4 69661833 69661868 -85968252 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1116 731 226 203 12 chr4 69662002 69662248 -85967872 - MTD LTR MaLR -126 293 1 2 1116 471 244 71 43 chr4 69664249 69664390 -85965730 - RLTR25A LTR ERVK 0 1028 884 2 1116 402 184 60 156 chr4 69664373 69664540 -85965580 - RLTR25A LTR ERVK -258 770 620 2 1116 960 198 8 16 chr4 69664514 69664771 -85965349 - ORR1A3-int LTR MaLR -997 966 712 2 1116 1052 180 98 66 chr4 69664725 69664969 -85965151 - MT2B LTR ERVL -315 286 35 2 1116 428 188 274 151 chr4 69664840 69665059 -85965061 - ORR1A3-int LTR MaLR -1219 744 499 2 1116 1967 218 4 126 chr4 69665015 69665572 -85964548 - RLTR25A LTR ERVK -614 489 1 2 1116 913 107 7 7 chr4 69666330 69666480 -85963640 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 2 1116 3994 155 12 6 chr4 69666495 69667156 -85962964 - Lx LINE L1 -18 6636 5972 2 1116 884 158 6 12 chr4 69667157 69667323 -85962797 + B2_Mm2 SINE B2 30 194 -1 2 1116 23 0 0 0 chr4 69667434 69667457 -85962663 + AT_rich Low_complexity Low_complexity 1 23 0 2 1116 1152 55 14 0 chr4 69667457 69667603 -85962517 + B1_Mus1 SINE Alu 1 148 0 2 1116 183 184 0 0 chr4 69667660 69667698 -85962422 + (CCA)n Simple_repeat Simple_repeat 2 39 0 2 1116 526 318 98 4 chr4 69667896 69668130 -85961990 - Lx8 LINE L1 -275 7198 6943 2 1116 420 248 45 90 chr4 69669011 69669233 -85960887 - L1M5 LINE L1 -303 5821 5610 2 1116 23 23 0 44 chr4 69669429 69669444 -85960676 + AT_rich Low_complexity Low_complexity 1 14 0 2 1116 2293 40 11 0 chr4 69669444 69669718 -85960402 + L1Md_F2 LINE L1 6304 6580 -2 2 1116 23 23 0 44 chr4 69669718 69669747 -85960373 + AT_rich Low_complexity Low_complexity 1 29 0 2 1116 744 157 0 0 chr4 69669783 69669930 -85960190 + (CAGAGA)n Simple_repeat Simple_repeat 4 150 0 2 1116 537 306 53 39 chr4 69670148 69670330 -85959790 + B3 SINE B2 1 188 -28 2 1116 443 18 18 0 chr4 69670330 69670386 -85959734 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1116 537 306 53 39 chr4 69670386 69670410 -85959710 + B3 SINE B2 189 210 -6 2 1116 558 0 0 0 chr4 69670413 69670475 -85959645 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 2 1116 549 0 0 0 chr4 69671314 69671375 -85958745 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1116 863 267 91 34 chr4 69671416 69671769 -85958351 + L1MA8 LINE L1 5871 6243 -48 2 1116 353 202 83 0 chr4 69671772 69671856 -85958264 + BC1_Mm scRNA scRNA 2 92 -60 3 1116 306 309 21 38 chr4 69671856 69671881 -85958239 + ID_B1 SINE B4 2 111 -181 3 1116 278 312 65 65 chr4 69672022 69672207 -85957913 + MIR SINE MIR 12 196 -66 3 1116 661 262 52 141 chr4 69672350 69672656 -85957464 - B4 SINE B4 -12 280 2 3 1116 208 257 147 10 chr4 69672987 69673089 -85957031 - MIRb SINE MIR -69 199 84 3 1116 311 240 57 10 chr4 69674398 69674497 -85955623 - MIRb SINE MIR -114 154 44 3 1116 1357 287 102 20 chr4 69674926 69675037 -85955083 - Lx8 LINE L1 -15 7458 7340 3 1116 513 0 0 0 chr4 69675037 69675094 -85955026 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1116 1357 287 102 20 chr4 69675094 69675523 -85954597 - Lx8 LINE L1 -134 7339 6875 3 1116 227 259 37 66 chr4 69675737 69675840 -85954280 - MIRb SINE MIR -48 160 65 3 1116 189 0 0 0 chr4 69676642 69676663 -85953457 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1116 396 0 0 0 chr4 69677307 69677351 -85952769 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1116 463 253 70 16 chr4 69677487 69677672 -85952448 - MamRep434 DNA TcMar -135 291 97 3 1116 1003 258 26 118 chr4 69678079 69678470 -85951650 - ORR1E LTR MaLR 0 359 5 3 1116 7858 52 5 4 chr4 69678503 69679473 -85950647 - L1Md_F2 LINE L1 -6 6576 5606 3 1116 303 93 0 0 chr4 69679761 69679804 -85950316 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1116 1182 287 78 22 chr4 69680285 69680833 -85949287 + L1MC4 LINE L1 6777 7355 -687 3 1116 1047 193 69 0 chr4 69682755 69682957 -85947163 + B3 SINE B2 1 216 0 3 1116 819 277 29 10 chr4 69683051 69683259 -85946861 + B4 SINE B4 1 212 -80 3 1116 387 0 0 0 chr4 69683260 69683303 -85946817 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1116 207 0 0 0 chr4 69683662 69683685 -85946435 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1116 1556 236 120 17 chr4 69683809 69683885 -85946235 - MT2A LTR ERVL 0 533 453 3 1116 333 0 0 0 chr4 69683885 69683922 -85946198 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1116 1556 236 120 17 chr4 69683922 69684328 -85945792 - MT2A LTR ERVL -81 452 1 3 1116 188 271 0 20 chr4 69685080 69685129 -85944991 - L2c LINE L2 -196 3191 3144 3 1116 489 17 0 0 chr4 69686429 69686487 -85943633 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1116 818 287 6 102 chr4 69687480 69687802 -85942318 - B4 SINE B4 0 292 2 3 1116 224 258 10 61 chr4 69687827 69687926 -85942194 + GA-rich Low_complexity Low_complexity 4 97 0 3 1116 310 262 9 72 chr4 69688421 69688532 -85941588 - L2a LINE L2 -6 3420 3317 3 1116 459 318 111 44 chr4 69689056 69689326 -85940794 + B4A SINE B4 1 288 -4 3 1116 215 241 0 18 chr4 69689370 69689425 -85940695 + GA-rich Low_complexity Low_complexity 1 54 0 3 1116 1006 240 105 37 chr4 69690282 69690633 -85939487 - MTE2b LTR MaLR -4 375 1 3 1116 231 203 141 0 chr4 69692283 69692347 -85937773 + Kanga1c DNA Tc2 5 77 -652 3 1116 528 45 0 0 chr4 69692541 69692608 -85937512 + (ATATG)n Simple_repeat Simple_repeat 5 71 0 3 1116 607 234 48 2 chr4 69694190 69694366 -85935754 + B3A SINE B2 5 186 -30 3 1116 279 161 0 0 chr4 69694411 69694467 -85935653 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1116 1497 246 25 52 chr4 69694511 69694914 -85935206 + Lx5 LINE L1 6659 7050 0 3 1116 1740 203 26 0 chr4 69694933 69695278 -85934842 + MTC LTR MaLR 68 421 0 3 1116 1081 258 76 35 chr4 69695363 69695705 -85934415 - ORR1E LTR MaLR 0 359 4 3 1116 1455 224 66 60 chr4 69695812 69695880 -85934240 - RLTR11A LTR ERVK -4 524 459 3 1116 441 0 0 0 chr4 69695880 69695929 -85934191 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1116 1455 224 66 60 chr4 69695929 69696377 -85933743 - RLTR11A LTR ERVK -70 458 5 3 1116 470 261 42 0 chr4 69696404 69696523 -85933597 + B3A SINE B2 10 133 -65 3 1116 193 333 0 0 chr4 69696530 69696599 -85933521 + L2b LINE L2 3307 3375 0 3 1116 587 220 22 22 chr4 69697859 69697994 -85932126 + B1_Mur4 SINE Alu 9 143 -7 3 1116 432 0 0 0 chr4 69698002 69698050 -85932070 + (TAA)n Simple_repeat Simple_repeat 3 50 0 3 1116 354 245 9 56 chr4 69698062 69698170 -85931950 + L1_Rod LINE L1 5610 5712 -135 3 1116 288 0 0 0 chr4 69698171 69698203 -85931917 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1116 512 281 99 37 chr4 69698255 69698528 -85931592 + L1MB1 LINE L1 5878 6167 -1 3 1116 266 242 15 0 chr4 69698785 69698851 -85931269 - MIR SINE MIR -61 147 81 3 1116 293 366 91 15 chr4 69701172 69701369 -85928751 + MLT1G3 LTR MaLR 384 595 0 3 1116 1127 245 110 70 chr4 69702095 69702494 -85927626 + MTD LTR MaLR 3 417 -2 3 1116 213 282 0 53 chr4 69703322 69703397 -85926723 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1116 1130 288 7 4 chr4 69703401 69703680 -85926440 - B4 SINE B4 -4 288 9 3 1116 620 227 106 30 chr4 69704026 69704262 -85925858 - MER20B DNA MER1_type -13 770 517 3 1116 235 249 24 0 chr4 69705248 69705322 -85924798 + MIRm SINE MIR 46 122 -86 3 1116 627 266 111 45 chr4 69705730 69706018 -85924102 - MER44A DNA MER2_type -29 310 4 3 1116 531 82 0 0 chr4 69707182 69707255 -85922865 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1116 1059 52 0 0 chr4 69707309 69707443 -85922677 + (TC)n Simple_repeat Simple_repeat 2 135 0 3 1116 279 0 0 0 chr4 69707444 69707475 -85922645 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1116 267 54 0 0 chr4 69708354 69708391 -85921729 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1116 354 246 19 133 chr4 69710035 69710246 -85919874 + HAL1-2a_MD LINE L1 2345 2531 -493 3 1116 375 304 184 46 chr4 69710253 69710601 -85919519 + MLT1G1 LTR MaLR 2 397 -182 3 1116 484 304 186 8 chr4 69710606 69710961 -85919159 - MLT1D LTR MaLR -6 499 82 3 1116 275 288 134 47 chr4 69711031 69711202 -85918918 + MLT1G1 LTR MaLR 394 579 0 3 1116 395 271 118 61 chr4 69711282 69711561 -85918559 + L2 LINE L2 1268 1562 -1857 3 1116 621 61 0 0 chr4 69711587 69711669 -85918451 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1116 189 0 0 0 chr4 69711669 69711690 -85918430 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1116 495 0 0 0 chr4 69712068 69712123 -85917997 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1116 445 286 221 19 chr4 69712379 69712913 -85917207 + L2 LINE L2 2065 2706 -713 3 1116 782 280 22 31 chr4 69712923 69713148 -85916972 + MER58A DNA MER1_type 2 224 0 3 1116 376 369 95 6 chr4 69713166 69713482 -85916638 + L2 LINE L2 2736 3079 -340 3 1116 690 311 47 76 chr4 69713759 69713845 -85916275 + B4 SINE B4 1 85 -207 3 1116 1248 35 28 50 chr4 69713845 69714025 -85916095 + L1_Mus1 LINE L1 6392 6567 0 3 1116 690 311 47 76 chr4 69714025 69714213 -85915907 + B4 SINE B4 86 267 -25 3 1116 504 0 0 0 chr4 69714216 69714272 -85915848 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1116 224 30 30 0 chr4 69714281 69714314 -85915806 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 3 1116 833 278 87 44 chr4 69714554 69714967 -85915153 + L1MB3 LINE L1 5736 6166 -17 3 1116 21 0 0 0 chr4 69714967 69714988 -85915132 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 193 29 0 56 chr4 69715199 69715235 -85914885 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1116 2088 295 95 47 chr4 69716262 69717334 -85912786 - ORR1E-int LTR MaLR -15 1565 1 3 1116 1597 191 42 6 chr4 69717353 69717684 -85912436 - MTC LTR MaLR 0 421 79 3 1116 294 29 0 0 chr4 69717765 69717800 -85912320 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1116 977 95 7 0 chr4 69717800 69717937 -85912183 - B1_Mm SINE Alu -8 139 2 3 1116 1016 315 112 73 chr4 69717956 69718545 -85911575 - ORR1E-int LTR MaLR -948 632 21 3 1116 374 318 78 59 chr4 69718536 69718857 -85911263 - ORR1E LTR MaLR -29 330 4 3 1116 209 359 13 0 chr4 69718871 69718949 -85911171 - MIRc SINE MIR -114 154 76 3 1116 245 341 22 44 chr4 69720718 69720853 -85909267 - MIRb SINE MIR -86 182 51 3 1116 2097 222 50 2 chr4 69722354 69722756 -85907364 - MTC LTR MaLR 0 421 1 3 1116 1284 240 45 54 chr4 69722981 69723440 -85906680 + RLTR26 LTR ERVK 5 496 -146 3 1116 407 332 116 53 chr4 69724031 69724349 -85905771 + ORR1E LTR MaLR 3 340 -19 3 1116 3469 304 89 45 chr4 69724363 69725759 -85904361 + ORR1E-int LTR MaLR 2 1458 -122 3 1116 323 182 0 0 chr4 69725768 69725823 -85904297 + Lx9 LINE L1 7420 7474 -170 3 1116 342 0 0 0 chr4 69725823 69725861 -85904259 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1116 268 287 15 0 chr4 69725988 69726057 -85904063 + ORR1E-int LTR MaLR 1448 1507 -73 3 1116 464 314 97 93 chr4 69726057 69726325 -85903795 + ORR1E LTR MaLR 4 272 -98 3 1116 923 174 81 18 chr4 69726359 69726576 -85903544 - ORR1C2 LTR MaLR -3 381 148 3 1116 270 81 0 0 chr4 69726577 69726614 -85903506 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1116 3606 54 14 5 chr4 69726728 69727159 -85902961 - L1Md_F3 LINE L1 0 6584 6150 3 1116 770 194 22 0 chr4 69727159 69727298 -85902822 - ORR1C2 LTR MaLR -234 144 3 3 1116 236 220 33 17 chr4 69727300 69727360 -85902760 + ORR1E LTR MaLR 319 379 0 3 1116 247 196 0 21 chr4 69727981 69728028 -85902092 + B3 SINE B2 4 49 -167 3 1116 1693 170 65 32 chr4 69728030 69728371 -85901749 + L1VL4 LINE L1 410 761 -5541 3 1116 6906 161 3 14 chr4 69728368 69729531 -85900589 + L1_Mm LINE L1 4646 5796 -87 3 139 38643 17 3 7 chr4 69729535 69735142 -85894978 + L1Md_T LINE L1 1 5586 -297 3 1117 9414 14 0 0 chr4 69735142 69736177 -85893943 + L1Md_T LINE L1 5587 6582 0 3 1117 766 280 26 5 chr4 69737089 69737279 -85892841 + B3A SINE B2 5 198 0 3 1117 181 295 33 0 chr4 69738305 69738366 -85891754 + MIRc SINE MIR 148 210 -58 3 1117 203 0 37 0 chr4 69738630 69738657 -85891463 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 1117 385 194 0 15 chr4 69738763 69738831 -85891289 - B4A SINE B4 -220 72 6 3 1117 1547 187 7 53 chr4 69738861 69739161 -85890959 + Lx3C LINE L1 6684 6969 -7 3 1117 367 132 26 13 chr4 69740046 69740123 -85889997 + CT-rich Low_complexity Low_complexity 3 80 0 3 1117 252 217 14 14 chr4 69740223 69740293 -85889827 + CT-rich Low_complexity Low_complexity 3 72 0 3 1117 657 47 0 0 chr4 69740305 69740390 -85889730 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 3 1117 1237 68 11 6 chr4 69740390 69740566 -85889554 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 4 1117 451 207 219 26 chr4 69740572 69740686 -85889434 - B1_Mur3 SINE Alu -5 144 9 4 1117 232 184 20 0 chr4 69740697 69740746 -85889374 + CT-rich Low_complexity Low_complexity 2 51 0 4 1117 2102 58 0 1 chr4 69740904 69741192 -85888928 - Lx4A LINE L1 -1294 5764 5471 4 1117 1405 72 0 0 chr4 69741188 69741368 -85888752 + L1_Mm LINE L1 4574 4753 -1130 4 1117 1108 202 72 16 chr4 69741668 69742024 -85888096 - RLTR20B3 LTR ERVK 0 577 83 4 1117 222 37 0 0 chr4 69742024 69742051 -85888069 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1117 39964 49 1 11 chr4 69742114 69748502 -85881618 - L1Md_T LINE L1 0 6582 308 4 1117 445 149 103 0 chr4 69748502 69748589 -85881531 - RLTR20B3 LTR ERVK -481 96 1 4 1117 486 129 0 0 chr4 69748792 69748862 -85881258 - 4.5SRNA scRNA scRNA -14 80 11 4 1117 6356 103 15 6 chr4 69748862 69749731 -85880389 + L1_Mus4 LINE L1 5760 6636 0 4 1117 525 71 0 0 chr4 69749920 69749990 -85880130 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1117 447 259 12 123 chr4 69750071 69750234 -85879886 - B1_Mur3 SINE Alu 0 149 5 4 1117 267 333 31 70 chr4 69750338 69750467 -85879653 - MER5B DNA MER1_type -30 148 25 4 1117 420 284 68 80 chr4 69750507 69750874 -85879246 + MTEa LTR MaLR 10 377 -2 4 1117 372 337 30 37 chr4 69751052 69751248 -85878872 - MIRb SINE MIR -34 234 37 4 1117 252 302 44 62 chr4 69751567 69751680 -85878440 + MER5B DNA MER1_type 11 121 -57 4 1117 369 43 0 0 chr4 69753104 69753151 -85876969 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 4 1117 207 262 33 0 chr4 69753624 69753685 -85876435 - MIRb SINE MIR -22 246 184 4 1117 256 345 35 0 chr4 69754371 69754542 -85875578 + L1MD2 LINE L1 6179 6355 -4 4 1117 390 338 126 24 chr4 69754536 69754924 -85875196 + L1MC4a LINE L1 5281 5693 -2189 4 1117 1003 56 40 0 chr4 69755109 69755235 -85874885 + L1_Mus1 LINE L1 6430 6560 -7 4 1117 439 221 16 0 chr4 69755357 69755479 -85874641 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 1117 276 100 0 0 chr4 69755572 69755612 -85874508 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 4 1117 424 302 89 24 chr4 69755723 69755971 -85874149 + L1MC4a LINE L1 5616 5879 -2003 4 1117 192 216 0 0 chr4 69756223 69756274 -85873846 + C-rich Low_complexity Low_complexity 4 54 0 4 1117 635 280 51 14 chr4 69756881 69757152 -85872968 + L1MA4 LINE L1 5738 6017 -283 4 1117 1509 199 38 89 chr4 69757707 69758098 -85872022 - ORR1D1 LTR MaLR 0 374 4 4 1117 326 223 144 71 chr4 69758287 69758566 -85871554 - MER5C DNA MER1_type -3 310 20 4 1117 556 289 138 0 chr4 69759682 69759834 -85870286 - B3A SINE B2 -25 173 1 4 1117 376 320 166 50 chr4 69760418 69760599 -85869521 + MLT1K LTR MaLR 103 304 -291 4 1117 597 136 0 0 chr4 69760771 69760874 -85869246 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 4 1117 2935 177 91 26 chr4 69762629 69763169 -85866951 - RMER15 LTR ERVL 0 575 1 4 1117 1099 184 31 31 chr4 69765110 69765334 -85864786 + URR1B DNA MER1_type 2 225 0 4 1117 832 225 0 7 chr4 69765595 69765738 -85864382 + RSINE1 SINE B4 4 145 -20 4 1117 375 267 0 0 chr4 69765903 69765993 -85864127 + RMER1B Other Other 62 151 -915 4 1117 3631 185 66 141 chr4 69766383 69767486 -85862634 + RMER1B Other Other 43 1063 -3 4 1117 374 371 25 19 chr4 69767554 69767716 -85862404 - MER45A DNA Tip100 -5 173 11 4 1117 1729 218 196 0 chr4 69768613 69768782 -85861338 - RMER1C Other Other -17 1325 1094 4 1117 369 0 0 0 chr4 69768782 69768823 -85861297 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1117 1729 218 196 0 chr4 69768823 69769102 -85861018 - RMER1C Other Other -249 1093 790 4 1117 269 318 47 0 chr4 69769144 69769251 -85860869 - RMER1C Other Other -1202 140 29 4 1117 283 244 0 13 chr4 69769339 69769418 -85860702 + (CAG)n Simple_repeat Simple_repeat 2 79 0 4 1117 200 312 103 14 chr4 69770779 69770925 -85859195 + MIRb SINE MIR 72 230 -38 4 1117 465 340 88 33 chr4 69770961 69771434 -85858686 - MLT2D LTR ERVL 0 567 1 4 1117 205 261 0 0 chr4 69771675 69771721 -85858399 + (TAGTG)n Simple_repeat Simple_repeat 1 46 0 4 1117 252 302 16 0 chr4 69772962 69773025 -85857095 - MLT2B4 LTR ERVL -351 205 142 4 1117 218 160 20 0 chr4 69773044 69773094 -85857026 + (TTGG)n Simple_repeat Simple_repeat 3 53 0 4 1117 213 194 30 61 chr4 69773500 69773566 -85856554 + MIRb SINE MIR 157 220 -48 4 1117 485 252 86 8 chr4 69774720 69774848 -85855272 + B1F SINE Alu 1 138 -11 4 1117 663 293 47 24 chr4 69775040 69775253 -85854867 + B4 SINE B4 6 223 -69 4 1117 1615 118 122 0 chr4 69776183 69776437 -85853683 + L1_Mus3 LINE L1 6352 6636 -2 4 1117 447 106 0 0 chr4 69776437 69776503 -85853617 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 4 1117 201 74 0 0 chr4 69776852 69776879 -85853241 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1117 487 300 146 46 chr4 69777690 69777970 -85852150 + MLT1H1 LTR MaLR 190 497 -58 4 1117 5412 91 3 0 chr4 69777973 69778743 -85851377 + L1_Mm LINE L1 5070 5841 -42 4 1117 1972 115 145 5 chr4 69778746 69779140 -85850980 + L1Md_Gf LINE L1 83 531 -5991 4 1117 985 98 0 0 chr4 69779185 69779318 -85850802 + B1_Mus1 SINE Alu 3 135 -13 4 1117 4533 17 0 0 chr4 69779318 69779860 -85850260 + L1Md_T LINE L1 5044 5585 -298 4 1117 8486 31 1 0 chr4 69779861 69780910 -85849210 + L1Md_T LINE L1 5587 6582 0 4 1117 5483 69 16 12 chr4 69780912 69781644 -85848476 + L1_Mus1 LINE L1 5829 6563 -4 4 1117 4362 79 7 2 chr4 69781839 69782457 -85847663 + L1Md_F2 LINE L1 4550 5170 -713 4 1117 4034 42 15 0 chr4 69782450 69782975 -85847145 + L1Md_F2 LINE L1 6014 6546 -36 4 1117 1538 41 25 0 chr4 69782964 69783160 -85846960 + L1Md_F2 LINE L1 5386 5586 -297 4 1117 7851 56 2 3 chr4 69783160 69784149 -85845971 + L1Md_F2 LINE L1 5587 6574 -8 4 1117 198 0 0 0 chr4 69784157 69784179 -85845941 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 4 1117 318 167 24 71 chr4 69784200 69784284 -85845836 + RLTR25B LTR ERVK 430 509 -519 4 1117 700 53 0 40 chr4 69784216 69784315 -85845805 + B1_Mm SINE Alu 41 135 -12 4 1117 573 55 0 0 chr4 69784315 69784388 -85845732 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 4 1117 22 70 0 0 chr4 69784716 69784759 -85845361 + AT_rich Low_complexity Low_complexity 1 43 0 4 1117 451 264 125 24 chr4 69784761 69785009 -85845111 + L1ME4a LINE L1 5762 6034 -90 4 1117 21 0 0 0 chr4 69785088 69785109 -85845011 + AT_rich Low_complexity Low_complexity 1 21 0 4 1117 336 48 0 0 chr4 69785637 69785679 -85844441 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1117 294 229 153 18 chr4 69785687 69785798 -85844322 - MIR3 SINE MIR -82 126 1 4 1117 206 264 53 84 chr4 69785817 69785912 -85844208 + L2a LINE L2 3335 3426 0 4 1117 390 316 0 0 chr4 69785948 69786046 -85844074 + MIRb SINE MIR 31 128 -140 4 1117 564 328 79 45 chr4 69786569 69786923 -85843197 + L1M5 LINE L1 2774 3139 -3007 4 1117 1125 294 53 84 chr4 69786925 69787767 -85842353 + Lx7 LINE L1 6863 7678 -18 4 1117 472 285 221 0 chr4 69787807 69787979 -85842141 + B3 SINE B2 1 210 -6 4 1117 1143 176 36 14 chr4 69788569 69788788 -85841332 + URR1B DNA MER1_type 1 224 -1 4 1117 303 350 10 0 chr4 69789586 69789689 -85840431 + MLT1C LTR MaLR 166 269 -198 4 1117 258 81 0 0 chr4 69789826 69789863 -85840257 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 4 1117 219 114 0 0 chr4 69791400 69791435 -85838685 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1117 516 296 101 40 chr4 69791495 69791872 -85838248 - MER44B DNA MER2_type -38 512 104 4 1117 685 302 0 38 chr4 69791877 69792063 -85838057 + B3A SINE B2 2 180 -18 4 1117 262 328 0 0 chr4 69792120 69792187 -85837933 - MER44B DNA MER2_type -478 72 6 4 1117 730 81 0 0 chr4 69792264 69792363 -85837757 + Lx LINE L1 6234 6332 -322 4 1117 264 213 82 0 chr4 69792363 69792424 -85837696 + MLT1C LTR MaLR 298 363 -2 4 1117 2156 92 9 16 chr4 69792853 69793175 -85836945 - L1_Mus3 LINE L1 -1 6637 6318 4 1117 246 352 149 46 chr4 69793563 69793825 -85836295 + MLT1E3 LTR MaLR 80 368 -256 4 1117 554 284 93 0 chr4 69793869 69794031 -85836089 + MLT1E3 LTR MaLR 448 624 0 4 1117 436 283 68 46 chr4 69794996 69795259 -85834861 + L1_Mur3 LINE L1 5140 5408 -472 4 1117 3900 133 32 1 chr4 69795243 69795816 -85834304 + MusHAL1 LINE L1 941 1519 -1193 4 1117 510 57 0 0 chr4 69795816 69795886 -85834234 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1117 3900 133 32 1 chr4 69795886 69795997 -85834123 + MusHAL1 LINE L1 1520 1645 -1067 4 1117 10784 106 30 1 chr4 69795996 69796043 -85834077 + L1_Mus4 LINE L1 4150 4207 -1676 4 1117 288 0 0 0 chr4 69796043 69796075 -85834045 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1117 10784 94 27 0 chr4 69796075 69797887 -85832233 + L1_Mus4 LINE L1 4208 6065 -571 4 1117 191 189 19 0 chr4 69797983 69798036 -85832084 + CT-rich Low_complexity Low_complexity 1 54 0 4 1117 241 370 14 0 chr4 69798041 69798114 -85832006 - PB1 SINE Alu -46 81 8 4 1117 218 175 0 66 chr4 69798301 69798318 -85831802 + A-rich Low_complexity Low_complexity 5 19 0 4 1117 1100 88 0 13 chr4 69798318 69798467 -85831653 + B1_Mus2 SINE Alu 1 147 0 4 1117 218 175 0 66 chr4 69798467 69798510 -85831610 + A-rich Low_complexity Low_complexity 20 61 0 4 1117 501 275 64 6 chr4 69798675 69798847 -85831273 + B3A SINE B2 1 182 -16 4 1117 2112 185 63 5 chr4 69799032 69799429 -85830691 - MTC LTR MaLR 0 421 2 4 1117 3805 199 142 17 chr4 69799430 69800336 -85829784 - MTC-int LTR MaLR 0 1258 239 4 1117 241 215 123 0 chr4 69800334 69800399 -85829721 - MTC-int LTR MaLR -1185 73 1 4 1117 2098 166 89 3 chr4 69800403 69800783 -85829337 - MTC LTR MaLR -8 413 1 4 1117 384 302 98 16 chr4 69800994 69801404 -85828716 + L1M5 LINE L1 5052 5491 -633 4 1117 595 311 22 33 chr4 69801549 69801732 -85828388 + B3A SINE B2 2 182 -16 4 1117 211 195 0 0 chr4 69801741 69801782 -85828338 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 4 1117 907 220 61 23 chr4 69802000 69802214 -85827906 - ORR1D2 LTR MaLR -146 224 3 4 1117 1898 227 5 14 chr4 69802311 69802736 -85827384 + MTC LTR MaLR 1 421 0 4 1117 333 155 0 0 chr4 69803202 69803260 -85826860 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 4 1117 307 300 14 0 chr4 69803266 69803336 -85826784 - RSINE1 SINE B4 -26 139 69 5 1117 527 242 90 192 chr4 69803368 69803511 -85826609 - ID_B1 SINE B4 -3 221 73 5 1117 511 316 88 0 chr4 69803511 69803704 -85826416 - B3 SINE B2 -6 210 1 5 1117 527 242 90 192 chr4 69803704 69803805 -85826315 - ID SINE ID -152 72 2 5 1117 366 23 0 0 chr4 69804167 69804210 -85825910 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1117 248 286 0 0 chr4 69804210 69804280 -85825840 + MLT1B LTR MaLR 39 108 -282 5 1117 346 304 54 92 chr4 69804284 69804469 -85825651 + MLT1B LTR MaLR 213 390 0 5 1117 182 362 0 0 chr4 69804573 69804631 -85825489 + MIRm SINE MIR 98 155 -121 5 1117 3560 125 128 9 chr4 69805745 69806365 -85823755 + RLTR33 LTR ERVK 10 673 -5 5 1117 407 275 181 21 chr4 69806596 69806789 -85823331 + RMER21A LTR ERV1 466 689 -258 5 1117 1716 124 11 63 chr4 69806934 69807275 -85822845 + ORR1A2 LTR MaLR 1 331 -15 5 1117 356 109 18 0 chr4 69807306 69807361 -85822759 + ORR1A2 LTR MaLR 269 324 -2 5 1117 211 315 43 74 chr4 69807361 69807456 -85822664 + MIR SINE MIR 76 173 -103 5 1117 12086 16 0 0 chr4 69810494 69812660 -85817460 - L1Md_T LINE L1 0 6582 4417 5 1117 4638 174 44 47 chr4 69812660 69813549 -85816571 - RMER19B LTR ERVK -16 886 1 5 1117 283 358 0 10 chr4 69813898 69813994 -85816126 - MIR SINE MIR -117 145 51 5 1117 423 0 0 0 chr4 69816642 69816689 -85813431 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1117 1025 221 9 37 chr4 69817299 69817511 -85812609 - MTEb LTR MaLR 0 379 174 5 1117 2143 49 0 50 chr4 69817511 69817810 -85812310 - RLTR10B LTR ERVK 0 292 9 5 1117 281 28 0 0 chr4 69817810 69817846 -85812274 - RLTR10B LTR ERVK -256 36 1 5 1117 455 260 0 10 chr4 69817846 69817941 -85812179 - MTEb LTR MaLR -200 179 86 5 1117 338 282 123 101 chr4 69817981 69818257 -85811863 + B4A SINE B4 3 284 -8 5 1117 250 163 41 0 chr4 69818787 69818836 -85811284 + L1MC1 LINE L1 6251 6301 -32 5 1117 478 179 10 10 chr4 69818899 69818995 -85811125 + MLT1B LTR MaLR 85 180 -210 5 1117 253 199 0 0 chr4 69819034 69819091 -85811029 + L1MB8 LINE L1 5912 5968 -206 5 1117 668 322 46 30 chr4 69819294 69819557 -85810563 + RMER15 LTR ERVL 309 575 0 5 1117 821 196 163 0 chr4 69820637 69820821 -85809299 + B3 SINE B2 2 215 -1 5 1117 341 308 184 5 chr4 69820854 69821066 -85809054 + L1MB4 LINE L1 5526 5775 -405 5 1117 213 108 0 0 chr4 69821066 69821103 -85809017 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1117 941 264 25 4 chr4 69821157 69821438 -85808682 + L1MB4 LINE L1 5886 6172 -8 5 1117 474 75 0 0 chr4 69821867 69821934 -85808186 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1117 1239 288 3 10 chr4 69821970 69822258 -85807862 - B4 SINE B4 0 292 7 5 1117 496 356 38 21 chr4 69823527 69823765 -85806355 - MLT1D LTR MaLR -6 499 258 5 1117 231 342 24 49 chr4 69824764 69824887 -85805233 - MIRm SINE MIR -117 159 40 5 1117 239 298 15 104 chr4 69825069 69825204 -85804916 + MIRb SINE MIR 117 239 -29 5 1117 571 303 64 26 chr4 69826052 69826255 -85803865 + B4 SINE B4 84 292 0 5 1117 240 271 160 18 chr4 69826540 69826709 -85803411 + L1_Mur3 LINE L1 202 394 -7334 5 1117 1114 208 9 109 chr4 69826762 69827432 -85802688 + L1_Mur3 LINE L1 947 1543 -4337 5 1117 5272 134 10 31 chr4 69827453 69828360 -85801760 - Lx2B LINE L1 -27 6973 6086 5 1117 8008 166 83 42 chr4 69828358 69828882 -85801238 + L1_Mur3 LINE L1 1547 2065 -3815 5 1117 201 74 0 0 chr4 69828882 69828909 -85801211 + (CCA)n Simple_repeat Simple_repeat 3 29 0 5 1117 8008 166 83 42 chr4 69828909 69829985 -85800135 + L1_Mur3 LINE L1 2066 3178 -2702 5 1117 1008 82 37 0 chr4 69829985 69830119 -85800001 + B1_Mm SINE Alu 2 140 -7 5 1117 8008 166 83 42 chr4 69830119 69830541 -85799579 + L1_Mur3 LINE L1 3179 3654 -2226 5 1117 398 52 0 0 chr4 69830541 69830599 -85799521 + L1_Mus2 LINE L1 6509 6566 0 5 1117 3178 169 4 0 chr4 69830614 69831165 -85798955 + L1VL4 LINE L1 52 604 -5698 5 1117 432 163 0 151 chr4 69831156 69831308 -85798812 + L1_Mur3 LINE L1 4976 5104 -776 5 1117 21314 58 12 12 chr4 69831310 69835297 -85794823 - L1Md_A LINE L1 -1363 4520 478 5 1117 1522 126 0 0 chr4 69835280 69835503 -85794617 + Lx LINE L1 5791 6013 -641 5 1117 194 81 27 0 chr4 69835508 69835545 -85794575 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1117 3552 188 12 6 chr4 69835556 69836204 -85793916 + Lx LINE L1 5998 6649 -5 5 1117 4746 250 105 39 chr4 69836208 69836758 -85793362 + Lx6 LINE L1 5888 6515 -945 5 1117 1009 102 7 0 chr4 69836758 69836895 -85793225 + B1_Mus1 SINE Alu 2 139 -9 5 1117 209 57 0 28 chr4 69836895 69836931 -85793189 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1117 4746 250 105 39 chr4 69836931 69837828 -85792292 + Lx6 LINE L1 6516 7431 -29 5 1117 479 123 12 0 chr4 69837835 69837916 -85792204 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1117 293 257 122 19 chr4 69837917 69838024 -85792096 - RMER15 LTR ERVL -444 131 14 5 1117 206 235 39 0 chr4 69838033 69838084 -85792036 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 5 1117 405 366 24 27 chr4 69838331 69838626 -85791494 + MLT1I-int LTR MaLR 52 345 -1042 5 1117 1695 263 5 5 chr4 69839056 69839435 -85790685 - MTEa LTR MaLR 0 379 1 5 1117 264 370 103 11 chr4 69839474 69839649 -85790471 + MLT1I-int LTR MaLR 860 1050 -337 5 1117 231 352 74 0 chr4 69840158 69840266 -85789854 + MLT1I LTR MaLR 294 409 -2 5 1117 887 262 14 0 chr4 69840495 69840705 -85789415 + B3 SINE B2 1 213 -3 5 1117 23 0 0 0 chr4 69841020 69841043 -85789077 + AT_rich Low_complexity Low_complexity 1 23 0 5 1117 279 347 20 26 chr4 69841555 69841706 -85788414 + MER5A1 DNA MER1_type 17 166 0 5 1117 312 276 204 32 chr4 69842578 69842735 -85787385 + RMER15 LTR ERVL 300 483 -92 5 1117 643 305 43 34 chr4 69842752 69842959 -85787161 + ID_B1 SINE B4 4 212 -12 5 1117 2368 58 125 17 chr4 69843640 69843992 -85786128 - RLTR10 LTR ERVK 0 390 1 5 1117 1897 113 92 27 chr4 69844095 69844432 -85785688 - ORR1B2 LTR MaLR -8 359 1 5 1117 693 285 28 89 chr4 69844621 69845048 -85785072 - MTE2a LTR MaLR -14 405 18 5 1117 212 342 83 8 chr4 69845553 69845674 -85784446 - L2b LINE L2 -167 3208 3079 5 1117 289 237 10 40 chr4 69847548 69847649 -85782471 + L1MB8 LINE L1 5774 5871 -313 5 1117 1390 214 104 0 chr4 69847654 69847963 -85782157 + MTEa LTR MaLR 33 373 -6 5 1117 232 319 112 46 chr4 69847984 69848224 -85781896 + L1MB8 LINE L1 5916 6171 -7 5 1117 561 231 38 23 chr4 69848243 69848376 -85781744 + RMER1B Other Other 580 714 -352 5 1117 4475 243 69 65 chr4 69848559 69848791 -85781329 + RMER1C Other Other 28 250 -1092 5 1117 453 36 0 0 chr4 69848791 69848846 -85781274 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1117 4475 243 69 65 chr4 69848846 69849911 -85780209 + RMER1C Other Other 251 1331 -11 5 1117 1335 208 96 4 chr4 69850220 69850500 -85779620 + Lx6 LINE L1 6986 7291 -169 5 1117 4636 57 16 3 chr4 69850504 69851083 -85779037 + L1Md_F2 LINE L1 5992 6577 -5 5 1117 277 0 93 0 chr4 69851083 69851126 -85778994 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 5 1117 335 23 23 0 chr4 69851329 69851373 -85778747 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 5 1117 679 294 53 100 chr4 69852879 69853178 -85776942 - B4 SINE B4 -6 286 2 5 1117 396 0 0 0 chr4 69855898 69855942 -85774178 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1117 411 193 12 12 chr4 69855969 69856053 -85774067 - B4 SINE B4 -207 85 2 5 1117 244 257 43 0 chr4 69856486 69856556 -85773564 - L1M6 LINE L1 -5199 1297 1225 5 1117 1548 198 17 22 chr4 69856739 69856982 -85773138 - ORR1B1 LTR MaLR 0 394 151 5 1117 432 0 0 0 chr4 69856982 69857030 -85773090 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1117 1548 198 17 22 chr4 69857030 69857143 -85772977 - ORR1B1 LTR MaLR -244 150 41 5 1117 8490 162 20 141 chr4 69857149 69859381 -85770739 - ORR1B1-int LTR MaLR 0 1963 2 5 1117 676 308 63 45 chr4 69859688 69859964 -85770156 + B4A SINE B4 2 286 -6 5 1117 315 0 0 0 chr4 69859964 69859999 -85770121 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1117 280 270 104 78 chr4 69860050 69860243 -85769877 + L1MB5 LINE L1 5458 5655 -525 5 1117 1812 209 80 13 chr4 69860266 69860653 -85769467 + MTC LTR MaLR 1 413 -8 5 1117 288 223 38 113 chr4 69860692 69860798 -85769322 + MTEa LTR MaLR 2 99 -280 5 1117 319 184 18 18 chr4 69860802 69860913 -85769207 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 5 1117 335 245 55 28 chr4 69860957 69861066 -85769054 + MTEa LTR MaLR 262 373 -6 5 139 959 259 123 6 chr4 69861069 69861403 -85768717 + L1MB5 LINE L1 5759 6131 -43 5 1118 394 215 107 0 chr4 69861658 69861779 -85768341 + HAL1b LINE L1 1403 1536 -473 5 1118 387 315 37 89 chr4 69862052 69862436 -85767684 - ORR1B1 LTR MaLR 0 379 4 5 1118 509 253 247 0 chr4 69863300 69863494 -85766626 - Lx8 LINE L1 -179 7294 7053 5 1118 348 258 113 0 chr4 69864692 69864789 -85765331 - B1F SINE Alu -41 108 1 5 1118 338 254 112 135 chr4 69866005 69866301 -85763819 + B4A SINE B4 2 290 -2 5 1118 270 235 165 0 chr4 69866344 69866459 -85763661 + L1MC4 LINE L1 7652 7785 -257 5 1118 246 299 46 9 chr4 69866980 69867088 -85763032 + L1MA6 LINE L1 6172 6283 -17 5 1118 240 35 0 0 chr4 69868433 69868462 -85761658 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1118 957 180 51 0 chr4 69868462 69868640 -85761480 + L1_Mur3 LINE L1 5553 5739 -141 5 1118 5457 55 3 6 chr4 69868672 69869352 -85760768 - L1Md_F2 LINE L1 0 6582 5905 5 1118 358 231 44 47 chr4 69869476 69869613 -85760507 - MTEa LTR MaLR -33 346 217 5 1118 187 319 158 8 chr4 69870072 69870192 -85759928 - L2a LINE L2 -10 3416 3279 5 1118 1215 291 19 14 chr4 69870509 69870694 -85759426 - MTEb LTR MaLR -5 374 190 5 1118 1268 196 180 0 chr4 69870694 69871011 -85759109 + ORR1D1 LTR MaLR 1 374 0 5 1118 1215 291 19 14 chr4 69871011 69871191 -85758929 - MTEb LTR MaLR -190 189 8 5 1118 280 179 202 13 chr4 69871389 69871468 -85758652 - MLT1C LTR MaLR -14 453 360 5 1118 3674 8 0 0 chr4 69871745 69872141 -85757979 - MTA_Mm LTR MaLR 0 396 1 5 1118 248 93 0 23 chr4 69872302 69872346 -85757774 - RMER1C Other Other -5 1337 1295 5 1118 423 38 0 0 chr4 69872349 69872402 -85757718 + (CATA)n Simple_repeat Simple_repeat 2 54 0 5 1118 726 95 9 0 chr4 69872443 69872548 -85757572 - RMER1C Other Other -189 1153 1048 5 1118 1973 222 83 84 chr4 69872551 69873191 -85756929 - RMER1C Other Other -1 1341 703 5 1118 518 288 27 53 chr4 69873191 69873378 -85756742 - RMER1C Other Other -1131 211 30 5 1118 526 262 0 0 chr4 69873573 69873676 -85756444 - RMER1B Other Other -358 708 606 5 1118 630 245 53 35 chr4 69873751 69873960 -85756160 - MLT1C LTR MaLR -185 205 8 5 1118 278 106 21 0 chr4 69874155 69874202 -85755918 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1118 567 0 0 0 chr4 69874203 69874266 -85755854 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1118 364 60 0 0 chr4 69874283 69874333 -85755787 - B1_Mus2 SINE Alu -22 125 76 5 1118 1187 199 254 17 chr4 69875435 69875843 -85754277 - RLTR28 LTR ERVL -19 505 1 5 1118 982 260 40 96 chr4 69876933 69877307 -85752813 + MTE2a LTR MaLR 27 379 0 6 1118 273 297 36 9 chr4 69878290 69878402 -85751718 - MLT1D LTR MaLR -2 503 389 6 1118 367 325 110 20 chr4 69878448 69878693 -85751427 + ORR1D2 LTR MaLR 6 272 -98 6 1118 379 318 116 49 chr4 69878748 69879075 -85751045 - MLT1D LTR MaLR -156 349 1 6 1118 604 199 270 12 chr4 69879141 69879304 -85750816 + B3 SINE B2 2 206 -10 6 1118 396 333 134 16 chr4 69880348 69880534 -85749586 - B4 SINE B4 -2 290 83 6 1118 324 102 0 0 chr4 69881271 69881320 -85748800 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 6 1118 423 0 0 0 chr4 69882107 69882154 -85747966 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1118 581 234 49 7 chr4 69884808 69884950 -85745170 - MTE2a LTR MaLR -20 359 212 6 1118 372 278 54 31 chr4 69885000 69885130 -85744990 - MTE2a LTR MaLR -269 150 18 6 1118 335 205 97 94 chr4 69885212 69885359 -85744761 + MTEa LTR MaLR 236 377 -2 6 1118 284 203 31 0 chr4 69886455 69886519 -85743601 + Charlie24 DNA MER1_type 2374 2439 -11 6 1118 442 313 0 0 chr4 69888025 69888140 -85741980 + ORR1D2 LTR MaLR 6 120 -250 6 1118 243 61 0 0 chr4 69889452 69889485 -85740635 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 1118 437 298 140 61 chr4 69889741 69890261 -85739859 + L1MC4a LINE L1 5279 5844 -2038 6 1118 807 141 122 12 chr4 69890446 69890618 -85739502 - B2_Mm2 SINE B2 0 195 5 6 1118 2142 221 58 16 chr4 69890910 69891424 -85738696 + Tigger13a DNA MER2_type 195 730 -41 6 1118 520 332 143 16 chr4 69892011 69892256 -85737864 - B4A SINE B4 -8 284 9 6 1118 282 361 27 19 chr4 69892559 69892724 -85737396 + MIRm SINE MIR 18 191 -71 6 1118 294 274 58 10 chr4 69892736 69892839 -85737281 + L1MA5 LINE L1 6190 6297 -3 6 1118 280 198 250 33 chr4 69893149 69893269 -85736851 - L1MC5 LINE L1 -107 7854 7709 6 1118 454 265 0 39 chr4 69894006 69894108 -85736012 + RSINE1 SINE B4 16 113 -52 6 1118 229 235 20 0 chr4 69894991 69895042 -85735078 + (TATG)n Simple_repeat Simple_repeat 2 53 0 6 1118 183 129 0 0 chr4 69895190 69895221 -85734899 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 6 1118 180 0 0 0 chr4 69895918 69895938 -85734182 + (CAAGG)n Simple_repeat Simple_repeat 2 21 0 6 1118 513 309 76 22 chr4 69897801 69898076 -85732044 + B4A SINE B4 3 292 0 6 1118 857 166 14 0 chr4 69901788 69901933 -85728187 + B1_Mus2 SINE Alu 1 147 0 6 1118 186 293 68 17 chr4 69902983 69903042 -85727078 + L2a LINE L2 3364 3425 -1 6 1118 233 247 68 34 chr4 69903069 69903157 -85726963 - MIR SINE MIR -18 244 154 6 1118 391 157 57 0 chr4 69903262 69903332 -85726788 + PB1D10 SINE Alu 43 116 -1 6 1118 250 248 109 55 chr4 69904032 69904160 -85725960 + L2 LINE L2 2818 2952 -467 6 1118 240 35 0 0 chr4 69905746 69905775 -85724345 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 6 1118 251 265 128 64 chr4 69907708 69907833 -85722287 + MLT1L LTR MaLR 219 351 -259 6 1118 219 36 0 0 chr4 69908592 69908620 -85721500 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1118 22 56 0 0 chr4 69911787 69911823 -85718297 + AT_rich Low_complexity Low_complexity 1 36 0 6 1118 21 36 0 0 chr4 69913895 69913923 -85716197 + AT_rich Low_complexity Low_complexity 1 28 0 6 1118 264 202 75 19 chr4 69915909 69916015 -85714105 + Lx9 LINE L1 7484 7595 -49 6 1118 35 24 0 0 chr4 69916047 69916089 -85714031 + AT_rich Low_complexity Low_complexity 1 42 0 6 1118 210 326 93 14 chr4 69916318 69916458 -85713662 - MIRb SINE MIR -81 187 37 6 1118 213 291 25 25 chr4 69917602 69917683 -85712437 + MIR3 SINE MIR 8 88 -120 6 1118 298 316 26 9 chr4 69918637 69918740 -85711380 + PB1D10 SINE Alu 1 105 -12 6 1118 252 0 0 0 chr4 69918740 69918768 -85711352 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 1118 298 316 26 9 chr4 69918768 69918779 -85711341 + PB1D10 SINE Alu 106 116 -1 6 1118 329 243 57 0 chr4 69918792 69918862 -85711258 + B4 SINE B4 5 78 -214 6 1118 555 153 0 0 chr4 69918864 69918962 -85711158 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 1118 399 279 136 136 chr4 69918962 69919161 -85710959 + B4A SINE B4 94 292 0 6 1118 273 320 0 0 chr4 69919161 69919239 -85710881 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1118 231 300 100 0 chr4 69919281 69919341 -85710779 + ID4_ SINE ID 15 80 -3 6 1118 339 306 51 7 chr4 69919621 69919759 -85710361 - L1M5 LINE L1 -356 5768 5625 6 1118 252 0 0 0 chr4 69921372 69921400 -85708720 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1118 331 243 72 36 chr4 69921831 69921942 -85708178 - PB1D10 SINE Alu -1 116 2 6 1118 654 49 0 0 chr4 69922051 69922133 -85707987 + (TCCCC)n Simple_repeat Simple_repeat 2 83 0 6 1118 385 254 27 116 chr4 69922166 69922313 -85707807 - Lx5 LINE L1 -47 7003 6870 6 1118 252 296 45 27 chr4 69923411 69923522 -85706598 + L1M5 LINE L1 5708 5820 -304 6 1118 1816 169 78 11 chr4 69924646 69925004 -85705116 + ORR1C2 LTR MaLR 3 384 0 6 1118 196 302 50 30 chr4 69926600 69926699 -85703421 + MIRb SINE MIR 93 193 -75 6 1118 427 257 37 28 chr4 69926716 69926824 -85703296 + PB1D10 SINE Alu 9 117 0 6 1118 334 362 92 0 chr4 69928157 69928298 -85701822 + ORR1E LTR MaLR 2 155 -204 6 1118 382 305 146 0 chr4 69928760 69928911 -85701209 - B3 SINE B2 -42 174 2 6 1118 270 297 71 63 chr4 69928924 69929050 -85701070 + MIRb SINE MIR 37 163 -105 6 1118 251 98 0 24 chr4 69930032 69930074 -85700046 + Lx7 LINE L1 6142 6182 -1514 6 1118 532 270 54 23 chr4 69930075 69930204 -85699916 + ETnERV2-int LTR ERVK 7070 7202 -204 6 1118 5907 232 24 16 chr4 69930601 69931881 -85698239 + Lx6 LINE L1 6171 7460 0 6 1118 494 219 12 6 chr4 69932777 69932885 -85697235 - ORR1E LTR MaLR -265 105 1 6 1118 198 296 147 82 chr4 69934161 69934393 -85695727 + L2b LINE L2 3112 3358 -17 6 1118 384 311 58 32 chr4 69934597 69934786 -85695334 + MIRb SINE MIR 20 213 -55 6 1118 387 298 114 34 chr4 69934952 69935216 -85694904 + L2 LINE L2 427 711 -2708 6 1118 261 285 148 26 chr4 69935647 69935802 -85694318 + L2 LINE L2 2366 2539 -880 6 1118 349 354 79 0 chr4 69935866 69936030 -85694090 - MER58A DNA MER1_type -47 177 1 6 1118 337 294 118 67 chr4 69936030 69936285 -85693835 + L2 LINE L2 2803 3070 -349 6 1118 189 0 0 0 chr4 69937080 69937101 -85693019 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1118 832 294 99 28 chr4 69939051 69939753 -85690367 + L1MB8 LINE L1 5241 6043 -135 6 1118 208 275 176 0 chr4 69940603 69940694 -85689426 + MIRb SINE MIR 130 236 -32 6 1118 21 71 0 0 chr4 69940760 69940802 -85689318 + AT_rich Low_complexity Low_complexity 1 42 0 6 1118 210 147 0 0 chr4 69940858 69940892 -85689228 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1118 1119 191 89 4 chr4 69943076 69943313 -85686807 + MTD LTR MaLR 18 274 -145 6 1118 266 203 51 0 chr4 69943346 69943405 -85686715 + MTD LTR MaLR 358 419 0 6 1118 299 250 24 24 chr4 69943430 69943512 -85686608 + ID4 SINE ID 2 83 0 6 1118 288 229 264 25 chr4 69943635 69943756 -85686364 + LTR16E1 LTR ERVL 2 151 -387 6 1118 280 391 14 10 chr4 69944389 69944598 -85685522 + B4A SINE B4 83 292 0 6 1118 215 222 15 31 chr4 69944598 69944663 -85685457 + (CATA)n Simple_repeat Simple_repeat 3 66 0 6 1118 786 242 33 19 chr4 69944747 69944958 -85685162 - B3 SINE B2 0 216 3 6 1118 286 148 56 0 chr4 69945942 69945996 -85684124 - MIRc SINE MIR -188 80 24 6 1118 207 0 0 0 chr4 69946000 69946023 -85684097 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1118 377 354 30 34 chr4 69946462 69946696 -85683424 - L2 LINE L2 -547 2872 2640 6 1118 264 208 0 0 chr4 69948907 69948960 -85681160 - B1F SINE Alu -6 143 91 6 1118 189 0 0 0 chr4 69953066 69953087 -85677033 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6 1118 421 301 16 8 chr4 69954220 69954344 -85675776 - B1F2 SINE Alu -20 129 5 6 1118 343 246 236 4 chr4 69954487 69954720 -85675400 + L1ME1 LINE L1 5746 6032 -147 6 1118 615 275 51 0 chr4 69954832 69954970 -85675150 + RSINE1 SINE B4 4 148 -17 6 1118 342 0 0 0 chr4 69954974 69955012 -85675108 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1118 613 254 165 45 chr4 69955189 69955523 -85674597 + L1MA6 LINE L1 5902 6275 -25 6 1118 210 322 30 99 chr4 69955741 69955872 -85674248 - PB1 SINE Alu -2 125 4 6 1118 275 256 85 0 chr4 69955802 69955884 -85674236 - ID_B1 SINE B4 -65 159 71 6 1118 911 273 117 23 chr4 69955877 69956345 -85673775 + RCHARR1 DNA MER1_type 21 577 -397 6 1118 280 308 0 46 chr4 69956445 69956554 -85673566 - B3A SINE B2 -93 105 2 6 1118 1542 230 41 5 chr4 69956556 69956949 -85673171 + RCHARR1 DNA MER1_type 565 971 -3 6 1118 1099 66 0 0 chr4 69957553 69957689 -85672431 + B1_Mus1 SINE Alu 1 136 -12 6 1118 339 25 0 0 chr4 69957691 69957731 -85672389 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1118 357 62 0 0 chr4 69958126 69958174 -85671946 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1118 692 33 0 0 chr4 69958174 69958264 -85671856 - B1_Mus2 SINE Alu -16 131 42 6 1118 321 0 0 35 chr4 69958265 69958323 -85671797 - B2_Mm1t SINE B2 0 193 138 6 1118 430 111 0 39 chr4 69959688 69959791 -85670329 + (TCTG)n Simple_repeat Simple_repeat 4 102 0 6 1118 432 0 0 0 chr4 69960319 69960367 -85669753 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1118 957 235 70 0 chr4 69960773 69961016 -85669104 + B4A SINE B4 8 267 -25 6 1118 288 0 0 0 chr4 69961017 69961049 -85669071 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1118 241 336 63 16 chr4 69961160 69961287 -85668833 - L2c LINE L2 -3 3384 3252 6 1118 306 73 0 0 chr4 69961717 69961758 -85668362 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 6 1118 624 257 47 10 chr4 69964070 69964263 -85665857 + MER3 DNA MER1_type 10 209 0 7 1118 261 300 0 32 chr4 69964547 69964640 -85665480 + Charlie4z DNA MER1_type 40 129 -38 7 1118 444 314 34 54 chr4 69965433 69965638 -85664482 + MER20 DNA MER1_type 7 207 -12 7 1118 977 259 159 14 chr4 69966075 69966437 -85663683 - ORR1D1 LTR MaLR -1 373 6 7 1118 318 300 9 0 chr4 69966463 69966573 -85663547 + (TAGG)n Simple_repeat Simple_repeat 2 112 0 7 1118 202 337 74 38 chr4 69966613 69966735 -85663385 - MIRb SINE MIR -93 175 49 7 1118 264 257 73 30 chr4 69967826 69967986 -85662134 + MIRb SINE MIR 42 212 -56 7 1118 463 249 159 17 chr4 69969494 69969591 -85660529 + L1MA9 LINE L1 6026 6127 -185 7 1118 207 0 0 0 chr4 69969591 69969614 -85660506 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1118 463 249 159 17 chr4 69969614 69969692 -85660428 + L1MA9 LINE L1 6128 6226 -86 7 1118 231 299 0 56 chr4 69969771 69969842 -85660278 - ID4_ SINE ID -9 74 8 7 1118 330 26 0 0 chr4 69969888 69969927 -85660193 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 7 1118 601 315 157 30 chr4 69969936 69970547 -85659573 + L1MC4 LINE L1 6914 7602 -440 7 1118 469 271 88 40 chr4 69970903 69971176 -85658944 + Charlie4a DNA MER1_type 220 505 -3 7 1118 26 30 0 0 chr4 69974170 69974203 -85655917 + AT_rich Low_complexity Low_complexity 1 33 0 7 1118 2071 152 99 33 chr4 69974321 69974716 -85655404 - MTC LTR MaLR 0 421 1 7 1118 21 0 0 0 chr4 69974806 69974827 -85655293 + AT_rich Low_complexity Low_complexity 1 21 0 7 1118 409 312 73 2 chr4 69977104 69977294 -85652826 + RMER20B LTR ERVK 187 393 -123 7 1118 324 0 0 0 chr4 69977295 69977331 -85652789 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1118 230 288 0 40 chr4 69977922 69977998 -85652122 - HAL1 LINE L1 -2430 77 5 7 1118 392 273 53 8 chr4 69978250 69978383 -85651737 + ID_B1 SINE B4 83 221 -3 7 1118 23 33 0 0 chr4 69980503 69980533 -85649587 + AT_rich Low_complexity Low_complexity 1 30 0 7 1118 318 289 19 19 chr4 69980802 69980908 -85649212 + MLT1D LTR MaLR 346 451 -54 7 1118 674 263 237 0 chr4 69981283 69981561 -85648559 - MER2 DNA MER2_type -1 344 1 7 1118 234 250 44 0 chr4 69982034 69982102 -85648018 - L1M4 LINE L1 -459 5665 5595 7 1118 785 239 32 37 chr4 69982367 69982584 -85647536 + B3 SINE B2 1 216 0 7 1118 637 232 14 7 chr4 69982977 69983120 -85647000 + B1_Mur1 SINE Alu 5 148 -1 7 1118 584 309 136 19 chr4 69983494 69983965 -85646155 + MLT1H1 LTR MaLR 23 549 0 7 1118 1690 170 78 9 chr4 69984120 69984452 -85645668 + ORR1B2 LTR MaLR 1 355 -12 7 1118 604 303 73 21 chr4 69984717 69984950 -85645170 + B4A SINE B4 43 287 -5 7 1118 2406 261 98 32 chr4 69985093 69986164 -85643956 - L1MA7 LINE L1 -6 6285 5115 7 1118 254 260 269 28 chr4 69986148 69986330 -85643790 - L1M4 LINE L1 -1033 5107 4882 7 1118 1342 71 58 37 chr4 69986611 69986802 -85643318 + B2_Mm2 SINE B2 1 195 0 7 1118 1112 69 7 7 chr4 69986802 69986948 -85643172 + B1_Mm SINE Alu 1 146 -1 7 1118 267 103 0 0 chr4 69987150 69987189 -85642931 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 7 1118 2910 215 74 81 chr4 69987316 69988182 -85641938 + RMER13A LTR ERVK 1 860 0 7 1118 528 256 34 0 chr4 69990159 69990276 -85639844 + B3A SINE B2 48 168 -30 7 1118 573 72 0 0 chr4 69990278 69990361 -85639759 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1118 587 324 135 15 chr4 69990370 69991067 -85639053 + L1M2 LINE L1 1549 2483 -4366 7 1118 578 281 61 106 chr4 69991148 69991590 -85638530 + L1M2 LINE L1 3137 3558 -3287 7 1118 449 250 9 0 chr4 69991629 69991741 -85638379 + L1MA5 LINE L1 5681 5793 -507 7 1118 300 161 0 0 chr4 69991741 69991803 -85638317 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1118 226 301 0 0 chr4 69992032 69992105 -85638015 + L1MA5 LINE L1 6219 6291 -9 7 1118 368 226 71 0 chr4 69992172 69992256 -85637864 - ID_B1 SINE B4 -31 193 104 7 1118 257 264 76 102 chr4 69992256 69992290 -85637830 - B1F SINE Alu -34 115 1 7 1119 414 226 0 31 chr4 69993232 69993328 -85636792 + B3A SINE B2 2 94 -104 7 1119 650 217 173 5 chr4 69993344 69993529 -85636591 + B3 SINE B2 1 216 0 7 1119 381 336 0 0 chr4 69993584 69993697 -85636423 + ID_B1 SINE B4 99 211 -13 7 1119 373 290 71 24 chr4 69993697 69993710 -85636410 + B1F2 SINE Alu 18 149 0 7 1119 222 37 0 0 chr4 69994858 69994885 -85635235 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1119 378 57 0 0 chr4 69994885 69994938 -85635182 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1119 191 32 0 61 chr4 69995017 69995050 -85635070 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1119 547 250 12 70 chr4 69995050 69995067 -85635053 - RSINE1 SINE B4 -1 164 148 7 1119 1263 94 0 0 chr4 69995067 69995247 -85634873 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1119 547 250 12 70 chr4 69995247 69995401 -85634719 - RSINE1 SINE B4 -18 147 3 7 1119 23 0 0 0 chr4 69995496 69995519 -85634601 + AT_rich Low_complexity Low_complexity 1 23 0 7 1119 180 0 0 0 chr4 69995952 69995972 -85634148 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1119 450 94 0 0 chr4 69996064 69996128 -85633992 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1119 792 274 50 45 chr4 69997962 69998303 -85631817 + L1_Mur1 LINE L1 5246 5633 -664 7 1119 2027 146 63 8 chr4 69999064 69999531 -85630589 + RLTR31A_Mm LTR ERVK 1 561 0 7 1119 273 235 162 0 chr4 70000736 70000804 -85629316 + PB1 SINE Alu 15 93 -34 1 1119 1280 172 144 19 chr4 70000805 70001124 -85628996 + ORR1B2 LTR MaLR 1 359 -8 2 1119 38746 11 2 8 chr4 70001179 70006360 -85623760 + L1Md_A LINE L1 441 5586 -297 3 1119 9093 8 0 0 chr4 70006360 70007354 -85622766 + L1Md_A LINE L1 5587 6580 -2 3 1119 24 0 0 0 chr4 70007354 70007378 -85622742 + AT_rich Low_complexity Low_complexity 1 24 0 4 1119 1007 247 72 11 chr4 70007388 70007650 -85622470 + B4A SINE B4 1 278 -14 5 1119 196 111 0 43 chr4 70008051 70008098 -85622022 + CT-rich Low_complexity Low_complexity 1 45 0 6 1119 623 280 0 62 chr4 70008113 70008307 -85621813 - B3A SINE B2 -16 182 1 7 1119 370 312 83 47 chr4 70009503 70009753 -85620367 + MIR SINE MIR 15 262 0 8 1119 274 299 72 33 chr4 70009765 70009917 -85620203 + MIRb SINE MIR 55 212 -56 9 1119 189 0 0 0 chr4 70009959 70009980 -85620140 + (CACCAT)n Simple_repeat Simple_repeat 6 26 0 1 1119 201 281 175 0 chr4 70010338 70010430 -85619690 + MIRc SINE MIR 36 142 -126 1 1119 6311 111 23 14 chr4 70010516 70011502 -85618618 + Lx3A LINE L1 5985 6979 -2 1 1119 22 0 0 0 chr4 70011502 70011524 -85618596 + AT_rich Low_complexity Low_complexity 1 22 0 1 1119 404 191 12 0 chr4 70014264 70014348 -85615772 + MIRc SINE MIR 165 249 -19 1 1119 345 218 153 9 chr4 70014375 70014486 -85615634 + MIRb SINE MIR 28 154 -114 1 1119 252 0 0 0 chr4 70015470 70015498 -85614622 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1119 181 200 43 22 chr4 70016663 70016709 -85613411 + MIRc SINE MIR 84 130 -138 1 1119 589 273 204 8 chr4 70016800 70017040 -85613080 - B4A SINE B4 0 292 6 1 1119 228 274 78 10 chr4 70017491 70017594 -85612526 - MER102a DNA MER1_type -166 164 55 1 1119 289 321 85 0 chr4 70018898 70019004 -85611116 + Tigger7 DNA MER2_type 193 307 -2184 1 1119 565 261 80 0 chr4 70019037 70019236 -85610884 + Tigger7 DNA MER2_type 2201 2415 -76 1 1119 1844 131 102 11 chr4 70019669 70020023 -85610097 + ORR1B1 LTR MaLR 1 386 -8 2 1119 243 195 0 0 chr4 70020368 70020409 -85609711 + B4 SINE B4 252 292 0 2 1119 224 200 13 51 chr4 70020414 70020493 -85609627 + A-rich Low_complexity Low_complexity 3 78 0 2 1119 405 254 9 17 chr4 70020822 70020938 -85609182 + ID_B1 SINE B4 82 196 -28 2 1119 239 300 38 0 chr4 70021439 70021519 -85608601 + L4 LINE RTE 1649 1731 -298 2 1119 218 305 90 22 chr4 70022624 70022758 -85607362 + MIRb SINE MIR 43 185 -83 2 1119 693 186 10 136 chr4 70023333 70023532 -85606588 + ORR1B2 LTR MaLR 3 176 -202 2 1119 751 139 0 32 chr4 70023557 70023743 -85606377 + CT-rich Low_complexity Low_complexity 1 180 0 2 1119 1125 143 10 29 chr4 70023744 70023917 -85606203 + ORR1B2 LTR MaLR 156 329 -38 2 1119 906 134 30 0 chr4 70023917 70024051 -85606069 + B1_Mur4 SINE Alu 3 140 -10 2 1119 182 33 0 62 chr4 70024051 70024083 -85606037 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1119 1125 143 10 29 chr4 70024083 70024116 -85606004 + ORR1B2 LTR MaLR 330 358 -9 2 1119 298 327 30 0 chr4 70024120 70024221 -85605899 + PB1D10 SINE Alu 12 115 -2 3 1119 278 257 85 9 chr4 70026352 70026458 -85603662 - Charlie13b DNA Charlie -151 361 248 3 1119 198 306 49 98 chr4 70026480 70026603 -85603517 + MIRb SINE MIR 48 164 -104 3 1119 249 374 122 42 chr4 70027026 70027263 -85602857 - B4A SINE B4 -8 284 29 3 1119 21 0 0 0 chr4 70027904 70027925 -85602195 + AT_rich Low_complexity Low_complexity 1 21 0 3 1119 21956 57 0 0 chr4 70028174 70030896 -85599224 + L1Md_F2 LINE L1 2865 5586 -297 3 1119 8192 53 0 1 chr4 70030896 70031888 -85598232 + L1Md_F2 LINE L1 5587 6577 -5 3 1119 3504 20 5 0 chr4 70031898 70032292 -85597828 - MTA_Mm LTR MaLR 0 396 1 3 1119 9778 17 0 0 chr4 70032292 70033390 -85596730 - MTA_Mm-int LTR MaLR 0 1098 1 3 1119 3504 20 5 0 chr4 70033390 70033784 -85596336 - MTA_Mm LTR MaLR 0 396 1 3 1119 594 0 0 0 chr4 70033932 70033998 -85596122 + (GAGAA)n Simple_repeat Simple_repeat 2 67 0 3 1119 507 259 119 19 chr4 70034485 70034711 -85595409 + ORR1D2 LTR MaLR 1 287 -92 3 1119 3819 186 43 67 chr4 70034714 70035555 -85594565 + RMER13A LTR ERVK 1 821 -39 3 1119 363 178 14 14 chr4 70035564 70035651 -85594469 + ORR1D2 LTR MaLR 294 404 -15 3 1119 180 364 22 11 chr4 70035960 70036049 -85594071 + L2a LINE L2 3336 3425 -1 4 1119 409 296 137 61 chr4 70037409 70037672 -85592448 + L1ME3A LINE L1 5887 6169 -4 4 1119 217 255 146 21 chr4 70038920 70039016 -85591104 - L2b LINE L2 0 3375 3268 4 1119 779 145 0 0 chr4 70039150 70039288 -85590832 + GSAT_MM Satellite Satellite 186 323 -148 4 1119 181 244 171 23 chr4 70040054 70040142 -85589978 + MIRc SINE MIR 98 198 -70 4 1119 274 348 18 0 chr4 70041529 70041641 -85588479 + G-rich Low_complexity Low_complexity 2 115 0 4 1119 247 258 0 0 chr4 70042546 70042612 -85587508 + (CAGAGA)n Simple_repeat Simple_repeat 3 68 0 4 1119 254 330 24 3 chr4 70043424 70043613 -85586507 + L1MC4a LINE L1 5752 5945 -1937 4 1119 265 301 108 0 chr4 70043749 70043842 -85586278 + PB1D10 SINE Alu 6 108 -9 4 1119 21 57 0 0 chr4 70044021 70044056 -85586064 + AT_rich Low_complexity Low_complexity 1 35 0 4 1119 643 291 77 63 chr4 70044082 70044497 -85585623 + L1MD2 LINE L1 1674 2094 -4539 5 1119 23 54 0 0 chr4 70044525 70044562 -85585558 + AT_rich Low_complexity Low_complexity 1 37 0 5 1119 210 152 16 33 chr4 70044717 70044778 -85585342 + GA-rich Low_complexity Low_complexity 5 64 0 5 1119 27 0 0 0 chr4 70044902 70044929 -85585191 + AT_rich Low_complexity Low_complexity 1 27 0 5 1119 243 149 0 5 chr4 70044938 70045006 -85585114 + L1MD2 LINE L1 2536 2602 -4031 5 1119 365 257 52 17 chr4 70045030 70045145 -85584975 + RSINE1 SINE B4 43 161 -4 5 1119 903 238 48 14 chr4 70045238 70045447 -85584673 + B3 SINE B2 1 216 0 5 1119 1185 61 0 0 chr4 70045452 70045599 -85584521 + B1_Mus1 SINE Alu 1 147 -1 5 1119 27 49 0 0 chr4 70045606 70045647 -85584473 + AT_rich Low_complexity Low_complexity 1 41 0 5 1119 1318 262 128 25 chr4 70045815 70046536 -85583584 + L1MD2 LINE L1 2895 3689 -2848 5 1119 220 286 26 13 chr4 70046541 70046619 -85583501 + ID4_ SINE ID 5 83 0 5 1119 850 254 14 5 chr4 70046803 70047017 -85583103 + ID_B1 SINE B4 1 216 -8 5 1119 324 267 102 7 chr4 70047241 70047388 -85582732 + L1M5 LINE L1 3572 3732 -2414 6 1119 416 307 34 19 chr4 70047599 70047805 -85582315 + L1M5 LINE L1 4500 4708 -1438 6 1119 547 283 46 7 chr4 70047987 70048140 -85581980 + RSINE1 SINE B4 5 163 -2 6 1119 845 33 67 0 chr4 70048142 70048292 -85581828 + (GA)n Simple_repeat Simple_repeat 2 161 0 6 1119 278 50 25 0 chr4 70048297 70048337 -85581783 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 6 1119 1508 269 77 53 chr4 70048351 70049544 -85580576 + L1MD2 LINE L1 5274 6516 -54 5 1119 315 0 0 0 chr4 70049563 70049598 -85580522 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1119 356 209 0 81 chr4 70049699 70049798 -85580322 + B1_Mur4 SINE Alu 60 150 0 6 1119 301 299 174 7 chr4 70050067 70050205 -85579915 - B4A SINE B4 -86 206 46 6 1119 197 261 165 52 chr4 70050964 70051000 -85579120 + L2 LINE L2 2822 2853 -566 6 1119 288 0 0 0 chr4 70051000 70051032 -85579088 + (TGG)n Simple_repeat Simple_repeat 1 32 0 6 1119 197 261 165 52 chr4 70051032 70051189 -85578931 + L2 LINE L2 2854 3037 -382 6 1119 386 336 60 64 chr4 70051610 70051893 -85578227 + B4A SINE B4 1 282 -10 6 1119 210 359 8 8 chr4 70051903 70052021 -85578099 + (CA)n Simple_repeat Simple_repeat 1 118 0 7 1119 207 139 0 0 chr4 70052452 70052488 -85577632 + (GGA)n Simple_repeat Simple_repeat 1 36 0 7 1119 223 281 0 0 chr4 70052488 70052545 -85577575 + (CGA)n Simple_repeat Simple_repeat 1 57 0 7 1119 468 261 82 13 chr4 70052673 70052832 -85577288 + MIRb SINE MIR 74 243 -25 7 1119 383 301 0 16 chr4 70053201 70053326 -85576794 + B1F1 SINE Alu 1 123 -26 7 1119 715 224 82 15 chr4 70053353 70053548 -85576572 + B3 SINE B2 2 209 -7 7 1119 927 160 29 7 chr4 70053824 70053999 -85576121 - Lx LINE L1 -2295 5490 5294 7 1119 3788 161 48 57 chr4 70054000 70055636 -85574484 + Lx LINE L1 5421 6997 0 7 1119 24 32 0 0 chr4 70055641 70055672 -85574448 + AT_rich Low_complexity Low_complexity 1 31 0 7 1119 685 315 72 22 chr4 70055685 70055961 -85574159 + B4A SINE B4 3 292 0 7 1119 404 305 14 56 chr4 70056230 70056445 -85573675 - L1M5 LINE L1 -382 5742 5537 7 1119 236 361 74 0 chr4 70056813 70056935 -85573185 - MIRb SINE MIR -14 254 124 8 1119 185 275 43 14 chr4 70057654 70057724 -85572396 - MIRc SINE MIR -171 97 26 8 1119 1119 86 7 0 chr4 70058726 70058878 -85571242 + B2_Mm1a SINE B2 1 153 -40 8 1119 185 0 0 39 chr4 70058878 70058904 -85571216 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 1119 348 24 0 0 chr4 70058910 70058951 -85571169 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 8 1119 3768 154 42 10 chr4 70059172 70059843 -85570277 + RLTR17 LTR ERVK 1 692 0 8 1119 1282 170 29 80 chr4 70060808 70061122 -85568998 + RMER1C Other Other 1027 1324 -18 8 1119 212 302 0 19 chr4 70061333 70061387 -85568733 + B4A SINE B4 84 136 -156 8 1119 513 291 8 33 chr4 70061415 70061583 -85568537 + B4A SINE B4 139 292 0 8 1119 850 166 14 7 chr4 70061674 70061820 -85568300 + B1_Mur4 SINE Alu 4 150 0 8 1119 210 285 158 75 chr4 70061838 70061971 -85568149 + MIR SINE MIR 49 192 -70 8 1119 335 303 93 83 chr4 70062692 70062908 -85567212 - MER58A DNA MER1_type -3 221 4 9 1119 197 360 12 0 chr4 70062922 70063008 -85567112 - L2a LINE L2 -1 3425 3339 9 1119 350 309 68 11 chr4 70063337 70063514 -85566606 - L2a LINE L2 -617 2802 2616 9 1119 1669 221 15 9 chr4 70064944 70065287 -85564833 + ORR1D1 LTR MaLR 1 345 -29 9 1119 572 131 0 21 chr4 70065285 70065298 -85564822 - B2_Mm2 SINE B2 -24 171 159 9 1119 315 0 0 0 chr4 70065298 70065333 -85564787 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 9 1119 592 100 0 0 chr4 70065333 70065413 -85564707 - B2_Mm1t SINE B2 -33 160 81 9 1119 288 0 0 0 chr4 70065413 70065445 -85564675 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 9 1119 1123 107 6 0 chr4 70065445 70065604 -85564516 - B2_Mm1t SINE B2 -33 160 1 9 1119 293 93 0 0 chr4 70065605 70065648 -85564472 + ORR1D1 LTR MaLR 332 374 0 9 1119 2020 165 156 3 chr4 70066132 70066497 -85563623 + MTC LTR MaLR 1 421 0 9 1119 1207 63 28 0 chr4 70066688 70066831 -85563289 + B1_Mus2 SINE Alu 1 147 0 9 1119 309 51 0 0 chr4 70066831 70066870 -85563250 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1119 223 196 20 0 chr4 70067323 70067374 -85562746 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1119 1180 295 145 33 chr4 70067780 70068540 -85561580 + L1MB8 LINE L1 5315 6159 -19 1 1119 389 284 97 50 chr4 70068626 70068854 -85561266 - B4 SINE B4 -28 264 17 1 1119 705 171 130 15 chr4 70069926 70070057 -85560063 - B1_Mus2 SINE Alu -1 146 1 1 1119 214 246 18 0 chr4 70071990 70072047 -85558073 - MIR SINE MIR -75 133 76 1 1119 188 233 0 23 chr4 70072491 70072535 -85557585 - MIRm SINE MIR -200 76 34 1 1119 313 263 101 8 chr4 70072635 70072754 -85557366 + Lx8 LINE L1 7271 7400 -73 1 1119 287 100 80 0 chr4 70072818 70072868 -85557252 + Lx8 LINE L1 7404 7457 -16 1 1119 944 299 24 37 chr4 70073654 70073949 -85556171 - 7SK RNA RNA -33 298 8 1 1119 230 283 0 0 chr4 70074164 70074224 -85555896 - L1MC4a LINE L1 -1 7881 7822 1 1119 317 272 119 36 chr4 70074228 70074312 -85555808 + PB1D10 SINE Alu 1 91 -26 1 1119 354 23 0 0 chr4 70074326 70074369 -85555751 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1119 288 0 0 0 chr4 70074369 70074400 -85555720 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1119 1088 279 74 38 chr4 70074414 70074995 -85555125 - L1MC4a LINE L1 -77 7805 7204 1 1119 274 300 133 91 chr4 70075026 70075169 -85554951 + B4A SINE B4 2 150 -142 1 1119 384 40 0 0 chr4 70075174 70075224 -85554896 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1119 298 295 23 23 chr4 70075281 70075413 -85554707 - L1MC4a LINE L1 -940 7102 6971 1 1119 206 323 0 0 chr4 70075619 70075681 -85554439 + L2b LINE L2 3310 3371 -4 1 1119 413 246 144 5 chr4 70075713 70075901 -85554219 + L1MA5 LINE L1 6087 6300 0 1 1119 844 214 207 35 chr4 70075983 70076244 -85553876 - MTD LTR MaLR 0 419 114 1 1119 457 244 16 47 chr4 70076253 70076382 -85553738 - MER34A LTR ERV1 -419 152 28 1 1119 2151 193 81 27 chr4 70076510 70076989 -85553131 + RLTR16 LTR ERVK 1 505 0 1 1119 223 282 78 0 chr4 70077044 70077119 -85553001 - MIRb SINE MIR -185 83 3 1 1119 516 56 0 0 chr4 70077523 70077595 -85552525 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1119 306 280 47 0 chr4 70077597 70077704 -85552416 - B1F SINE Alu -22 127 16 1 1119 289 336 84 0 chr4 70077609 70077716 -85552404 - ID_B1 SINE B4 -31 193 78 1 1119 283 278 22 11 chr4 70078144 70078235 -85551885 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 1 1119 648 356 61 31 chr4 70078278 70078539 -85551581 - B4A SINE B4 -18 274 6 1 1119 229 271 129 0 chr4 70078565 70078635 -85551485 - PB1D10 SINE Alu -22 95 17 1 1119 277 175 33 66 chr4 70078911 70078972 -85551148 - B1F SINE Alu -2 147 89 1 1119 1274 165 21 134 chr4 70079000 70079190 -85550930 + RLTR9A LTR ERVK 77 228 -140 1 1119 1234 49 7 0 chr4 70079190 70079334 -85550786 - B1_Mm SINE Alu 0 147 3 1 1119 1274 165 21 134 chr4 70079334 70079472 -85550648 + RLTR9A LTR ERVK 229 368 0 1 1119 228 330 38 28 chr4 70079950 70080056 -85550064 - MIRb SINE MIR -82 186 80 1 1119 553 170 36 14 chr4 70080177 70080330 -85549790 + RMER4B LTR ERVK 1 214 -371 1 1119 1080 155 11 0 chr4 70080327 70080501 -85549619 + RMER4B LTR ERVK 410 585 0 1 1119 740 275 31 11 chr4 70080517 70080708 -85549412 + ORR1D2 LTR MaLR 1 195 -175 1 1119 525 32 0 0 chr4 70081154 70081217 -85548903 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1119 287 85 21 0 chr4 70081217 70081264 -85548856 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1119 1923 141 70 81 chr4 70081826 70082197 -85547923 + ORR1B2 LTR MaLR 1 367 0 1 1119 467 317 106 35 chr4 70082229 70082484 -85547636 - MER21B LTR ERV1 -121 742 470 1 1119 336 379 8 0 chr4 70082526 70082658 -85547462 - MER21B LTR ERV1 -523 340 208 1 1119 2564 51 27 6 chr4 70082752 70083088 -85547032 - IAPEY_LTR LTR ERVK 0 385 43 1 1119 453 241 13 66 chr4 70083167 70083317 -85546803 + RLTR11B LTR ERVK 1 142 -311 1 1119 1205 209 20 60 chr4 70083317 70083617 -85546503 - RLTR20A LTR ERVK 0 541 254 1 1119 906 217 155 9 chr4 70083623 70083712 -85546408 - ORR1D1 LTR MaLR -108 266 178 1 1119 591 15 0 0 chr4 70083712 70083780 -85546340 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1119 906 217 155 9 chr4 70083780 70083922 -85546198 - ORR1D1 LTR MaLR -197 177 1 1 1119 509 261 8 70 chr4 70083968 70084096 -85546024 + RSINE1 SINE B4 9 128 -37 1 1119 317 43 21 0 chr4 70084096 70084143 -85545977 + (CACAC)n Simple_repeat Simple_repeat 5 52 0 1 1119 2184 169 43 5 chr4 70084207 70084575 -85545545 + MTC LTR MaLR 40 421 0 1 1119 245 316 114 61 chr4 70084774 70085151 -85544969 - L1ME3B LINE L1 -215 6025 5629 1 1119 318 188 44 66 chr4 70085666 70085757 -85544363 - MLT1A1 LTR MaLR -2 406 318 1 1119 423 0 0 0 chr4 70086425 70086472 -85543648 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1119 724 321 63 20 chr4 70086476 70086730 -85543390 - B4A SINE B4 -26 266 2 1 1119 25 0 0 0 chr4 70086741 70086766 -85543354 + AT_rich Low_complexity Low_complexity 1 25 0 1 1119 2466 154 137 2 chr4 70086833 70087307 -85542813 - RMER4B LTR ERVK 0 585 46 1 1119 1968 139 29 3 chr4 70087307 70087617 -85542503 + ORR1A3 LTR MaLR 1 318 -8 1 1119 24 0 0 0 chr4 70087805 70087829 -85542291 + AT_rich Low_complexity Low_complexity 1 24 0 1 1119 378 318 0 43 chr4 70087829 70087972 -85542148 - RSINE1 SINE B4 -29 136 2 1 1119 523 291 43 0 chr4 70088435 70088576 -85541544 - B1F1 SINE Alu -2 147 1 1 1119 419 157 0 0 chr4 70088827 70088897 -85541223 - L1_Mm LINE L1 -1196 4687 4618 1 1119 3899 70 16 20 chr4 70088897 70089404 -85540716 + L1_Mus3 LINE L1 6134 6638 0 1 1119 333 250 0 0 chr4 70089567 70089639 -85540481 - ID2 SINE ID -10 73 2 1 1119 26 30 0 0 chr4 70089888 70089921 -85540199 + AT_rich Low_complexity Low_complexity 1 33 0 1 1119 240 35 0 0 chr4 70090479 70090508 -85539612 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1119 334 219 124 25 chr4 70092242 70092362 -85537758 + MIR SINE MIR 102 240 -28 1 1119 21 0 0 0 chr4 70092362 70092383 -85537737 + AT_rich Low_complexity Low_complexity 1 21 0 1 1119 24 0 0 0 chr4 70094697 70094721 -85535399 + AT_rich Low_complexity Low_complexity 1 24 0 1 1119 365 253 0 33 chr4 70095209 70095299 -85534821 + MIRb SINE MIR 98 184 -84 1 1119 21 0 0 0 chr4 70095336 70095357 -85534763 + AT_rich Low_complexity Low_complexity 1 21 0 1 1119 482 291 29 81 chr4 70096816 70096988 -85533132 - RSINE1 SINE B4 0 165 3 1 1119 310 241 25 25 chr4 70097135 70097216 -85532904 - ID4_ SINE ID -1 82 2 1 1119 207 330 178 39 chr4 70097308 70097668 -85532452 + L2 LINE L2 2341 2750 -669 1 1119 1144 76 0 40 chr4 70098336 70098487 -85531633 - B1_Mm SINE Alu -2 145 1 1 1119 227 211 0 19 chr4 70098693 70098746 -85531374 - L1MB8 LINE L1 -49 6129 6078 1 1119 328 238 12 12 chr4 70099246 70099331 -85530789 - PB1D10 SINE Alu -1 116 32 1 1119 1924 189 81 3 chr4 70099448 70099829 -85530291 + MTD LTR MaLR 1 411 -8 1 1119 3111 155 43 6 chr4 70099917 70100005 -85530115 - RLTR20A1 LTR ERVK 0 551 461 1 1119 450 0 0 0 chr4 70100005 70100055 -85530065 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1119 3111 155 43 6 chr4 70100055 70100497 -85529623 - RLTR20A1 LTR ERVK -91 460 2 1 1119 23 33 0 0 chr4 70100853 70100883 -85529237 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 4088 193 48 55 chr4 70101422 70102525 -85527595 + MYSERV16_I-int LTR ERVK 1 1345 -1497 1 1119 3240 109 35 7 chr4 70102522 70103059 -85527061 + MYSERV16_I-int LTR ERVK 1062 1613 -713 1 1119 3394 151 58 9 chr4 70103076 70103712 -85526408 + MYSERV16_I-int LTR ERVK 1660 2326 0 1 1119 830 135 0 31 chr4 70103712 70103842 -85526278 + RLTR20A2 LTR ERVK 1 126 -425 1 1119 7030 157 52 82 chr4 70103842 70104374 -85525746 + Lx2 LINE L1 5527 5964 -1033 1 1119 8626 50 4 0 chr4 70104374 70105365 -85524755 + L1Md_F2 LINE L1 5587 6581 -1 1 1119 7030 156 56 86 chr4 70105365 70106335 -85523785 + Lx2 LINE L1 5965 6995 -2 1 1119 2325 199 39 32 chr4 70106341 70106807 -85523313 + RLTR20A2 LTR ERVK 107 575 -3 1 1119 891 329 89 16 chr4 70107973 70108288 -85521832 + MLT1F LTR MaLR 82 419 -129 1 1119 34 42 0 0 chr4 70108401 70108449 -85521671 + AT_rich Low_complexity Low_complexity 1 48 0 1 1119 223 350 0 0 chr4 70108458 70108518 -85521602 - ID2 SINE ID -18 65 6 1 1119 388 281 82 33 chr4 70108556 70108799 -85521321 + L1MB7 LINE L1 5282 5536 -638 1 1119 250 236 167 73 chr4 70108844 70108940 -85521180 + B3 SINE B2 112 216 0 1 1119 490 241 22 14 chr4 70109072 70109211 -85520909 + L1MB7 LINE L1 5546 5685 -499 1 1119 471 254 155 10 chr4 70109302 70109509 -85520611 + L1MB7 LINE L1 5658 5894 -290 1 1119 534 57 0 0 chr4 70109961 70110031 -85520089 + (GGAGA)n Simple_repeat Simple_repeat 2 71 0 1 1119 377 291 194 28 chr4 70110036 70110216 -85519904 + B3 SINE B2 2 211 -5 1 1119 674 307 11 11 chr4 70110266 70110447 -85519673 - B3A SINE B2 -16 182 2 1 1119 1196 177 33 19 chr4 70110773 70110986 -85519134 + B3 SINE B2 1 216 0 1 1119 26 50 0 0 chr4 70111290 70111330 -85518790 + AT_rich Low_complexity Low_complexity 1 40 0 1 1119 355 213 35 0 chr4 70111819 70111909 -85518211 + MT2A LTR ERVL 1 100 -375 1 1119 185 253 253 0 chr4 70112506 70112585 -85517535 - MIRb SINE MIR -75 193 95 1 1119 283 332 121 21 chr4 70113310 70113599 -85516521 - L2b LINE L2 -1 3425 3108 1 1119 279 0 0 0 chr4 70114010 70114041 -85516079 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1119 813 225 0 65 chr4 70114340 70114540 -85515580 - B2_Mm2 SINE B2 -6 189 3 1 1119 515 332 24 58 chr4 70114598 70114803 -85515317 - B4A SINE B4 -5 287 90 1 1119 969 60 0 0 chr4 70114820 70114937 -85515183 + L1_Mus1 LINE L1 6273 6389 -178 1 1119 329 43 0 0 chr4 70114937 70114984 -85515136 + L1_Mus1 LINE L1 6521 6567 0 1 1119 648 205 192 0 chr4 70114995 70115146 -85514974 + B3 SINE B2 27 206 -10 1 1119 448 202 79 0 chr4 70115145 70115234 -85514886 - B4 SINE B4 -194 98 3 1 1119 637 180 99 23 chr4 70115524 70115655 -85514465 + B1_Mur4 SINE Alu 10 150 0 1 1119 447 319 92 0 chr4 70116014 70116177 -85513943 - L1MEg2 LINE L1 -6077 375 198 1 1119 782 177 0 8 chr4 70117157 70117288 -85512832 + B3 SINE B2 1 130 -86 2 1119 365 282 29 0 chr4 70117379 70117482 -85512638 - B1F SINE Alu 0 149 44 2 1119 781 241 15 35 chr4 70117943 70118141 -85511979 - B3A SINE B2 -1 197 4 2 1119 3949 115 17 2 chr4 70118166 70118741 -85511379 + Lx LINE L1 5654 6237 -417 2 1119 2038 25 0 0 chr4 70118741 70118985 -85511135 + MT2_Mm LTR ERVL 250 493 0 2 1119 2542 98 38 28 chr4 70118985 70119384 -85510736 + Lx LINE L1 6252 6654 0 2 1119 682 250 8 8 chr4 70119396 70119529 -85510591 - B3A SINE B2 -65 133 1 2 1119 180 111 0 0 chr4 70119647 70119674 -85510446 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 1119 585 259 26 53 chr4 70119734 70119764 -85510356 - B1_Mur3 SINE Alu 0 149 126 2 1119 1134 150 92 0 chr4 70119764 70119971 -85510149 + URR1A DNA MER1_type 1 226 0 2 1119 585 259 26 53 chr4 70119971 70120091 -85510029 - B1_Mur3 SINE Alu -24 125 3 2 1119 342 355 32 24 chr4 70119984 70120094 -85510026 - B4 SINE B4 -94 198 85 2 1119 279 0 0 0 chr4 70120094 70120125 -85509995 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1119 342 355 32 24 chr4 70120125 70120138 -85509982 - B4 SINE B4 -208 84 74 2 1119 244 316 70 20 chr4 70120226 70120326 -85509794 - LTR33 LTR ERVL -407 108 4 2 1119 234 288 101 8 chr4 70120472 70120591 -85509529 - L1_Mur2 LINE L1 -98 5779 5650 2 1119 620 252 41 9 chr4 70120728 70120879 -85509241 + B3A SINE B2 4 146 -49 2 1119 361 172 28 32 chr4 70121273 70121358 -85508762 - PB1D9 SINE Alu 0 120 38 2 1119 207 0 0 0 chr4 70121777 70121800 -85508320 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1119 1122 291 80 0 chr4 70122425 70122776 -85507344 + MTE2b LTR MaLR 1 379 0 2 1119 275 71 24 0 chr4 70123100 70123142 -85506978 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1120 237 273 30 0 chr4 70124941 70125007 -85505113 + ID4_ SINE ID 4 71 -12 2 1120 917 238 11 0 chr4 70126016 70126201 -85503919 + B3A SINE B2 1 187 -11 2 1120 693 0 0 0 chr4 70126333 70126410 -85503710 + (TTC)n Simple_repeat Simple_repeat 2 78 0 2 1120 780 222 14 0 chr4 70127170 70127314 -85502806 - B1_Mur1 SINE Alu -1 148 3 2 1120 245 309 45 11 chr4 70127577 70127754 -85502366 - L1M5 LINE L1 -843 5303 5121 2 1120 744 271 14 29 chr4 70127837 70127896 -85502224 + B3 SINE B2 1 59 -157 2 1120 4707 85 9 6 chr4 70127896 70128550 -85501570 - L1_Mus3 LINE L1 0 6638 5983 2 1120 744 271 14 29 chr4 70128550 70128699 -85501421 + B3 SINE B2 60 205 -11 2 1120 217 111 0 135 chr4 70128980 70129032 -85501088 + B3A SINE B2 1 45 -153 2 1120 724 33 0 0 chr4 70129028 70129120 -85501000 - BC1_Mm scRNA scRNA -60 92 1 2 1120 676 274 29 29 chr4 70129120 70129277 -85500843 + B3 SINE B2 34 194 -22 2 1120 483 18 0 0 chr4 70129277 70129333 -85500787 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1120 676 274 29 29 chr4 70129333 70129348 -85500772 + B3 SINE B2 195 206 -10 2 1120 561 293 55 104 chr4 70129357 70129519 -85500601 - B3A SINE B2 -3 195 43 2 1120 2121 169 13 3 chr4 70129519 70129893 -85500227 + ORR1C1 LTR MaLR 1 378 0 2 1120 561 293 55 104 chr4 70129893 70129932 -85500188 - B3A SINE B2 -156 42 4 2 1120 216 303 199 40 chr4 70129962 70130113 -85500007 + MIR SINE MIR 88 262 0 2 1120 286 266 143 19 chr4 70130114 70130275 -85499845 - L1M5 LINE L1 -1037 5109 4929 2 1120 236 327 46 9 chr4 70130606 70130714 -85499406 + L2a LINE L2 3065 3176 -250 2 1120 202 48 22 67 chr4 70131370 70131415 -85498705 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 2 1120 328 219 0 47 chr4 70131428 70131514 -85498606 - PB1D10 SINE Alu -2 115 34 2 1120 881 265 20 4 chr4 70131815 70132069 -85498051 + L1MA6 LINE L1 5515 5772 -528 2 1120 674 244 143 4 chr4 70132089 70132348 -85497772 + L1MA6 LINE L1 5892 6186 -114 2 1120 350 269 34 9 chr4 70133076 70133216 -85496904 - L1MD3 LINE L1 -59 7936 7732 2 1120 678 205 8 16 chr4 70133223 70133352 -85496768 + MT2A LTR ERVL 1 128 -405 2 1120 4379 10 2 12 chr4 70133352 70133850 -85496270 + MT2_Mm LTR ERVL 1 493 0 2 1120 47354 15 6 0 chr4 70133850 70139176 -85490944 + MERVL-int LTR ERVL 1 5360 -125 2 1120 392 167 46 35 chr4 70139176 70139263 -85490857 + ORR1A3-int LTR MaLR 553 640 -1323 2 1120 314 0 0 0 chr4 70139263 70139301 -85490819 + MERVL-int LTR ERVL 5448 5485 0 2 1120 4359 12 2 12 chr4 70139301 70139799 -85490321 + MT2_Mm LTR ERVL 1 493 0 2 1120 528 304 39 34 chr4 70139802 70140006 -85490114 + MT2A LTR ERVL 92 296 -237 2 1120 2131 193 58 8 chr4 70139963 70140359 -85489761 - MTC LTR MaLR -5 416 1 2 1120 552 292 35 128 chr4 70140359 70140589 -85489531 + MT2A LTR ERVL 397 599 -2 2 1120 431 382 137 14 chr4 70141156 70141423 -85488697 + MamGypLTR3 LTR Gypsy 170 475 -364 2 1120 404 37 19 0 chr4 70141423 70141477 -85488643 + (CAA)n Simple_repeat Simple_repeat 2 56 0 2 1120 431 382 137 14 chr4 70141477 70141501 -85488619 + MamGypLTR3 LTR Gypsy 476 497 -342 2 1120 522 46 0 0 chr4 70141974 70142039 -85488081 + (GGA)n Simple_repeat Simple_repeat 3 67 0 2 1120 622 294 5 25 chr4 70142378 70142577 -85487543 + B3A SINE B2 1 195 -3 2 1120 202 373 91 0 chr4 70142603 70142713 -85487407 + L2 LINE L2 2872 2991 -428 2 1120 21 71 0 0 chr4 70142960 70143002 -85487118 + AT_rich Low_complexity Low_complexity 1 42 0 2 1120 619 231 48 133 chr4 70143699 70143864 -85486256 + B3A SINE B2 44 194 -1 2 1120 1146 36 0 0 chr4 70146273 70146411 -85483709 + B1_Mm SINE Alu 2 139 -8 2 1120 306 0 0 0 chr4 70146411 70146445 -85483675 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1120 300 312 25 0 chr4 70146505 70146585 -85483535 + ID2 SINE ID 2 83 0 2 1120 598 211 29 174 chr4 70146650 70146822 -85483298 + B1F2 SINE Alu 3 149 0 2 1120 183 42 0 0 chr4 70147182 70147206 -85482914 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1120 698 181 8 8 chr4 70147212 70147340 -85482780 - B1_Mus1 SINE Alu -16 132 5 2 1120 43 20 0 0 chr4 70147448 70147498 -85482622 + AT_rich Low_complexity Low_complexity 1 50 0 2 1120 211 357 36 58 chr4 70147629 70147766 -85482354 - MIRb SINE MIR -131 137 4 2 1120 848 100 0 32 chr4 70147913 70148068 -85482052 + (TCCCC)n Simple_repeat Simple_repeat 2 151 0 2 1120 2100 97 94 72 chr4 70148135 70148537 -85481583 + Lx LINE L1 6244 6654 0 2 1120 516 322 21 0 chr4 70148549 70148692 -85481428 + RSINE1 SINE B4 20 165 0 2 1120 198 0 0 0 chr4 70150228 70150250 -85479870 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1120 432 0 0 0 chr4 70150783 70150831 -85479289 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1120 238 342 125 33 chr4 70150971 70151211 -85478909 + MIR SINE MIR 1 253 -15 2 1120 252 86 0 0 chr4 70151339 70151374 -85478746 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1120 261 225 141 0 chr4 70151735 70151806 -85478314 + LTR40b LTR ERVL 379 459 -3 2 1120 364 300 0 11 chr4 70152681 70152772 -85477348 + PB1D10 SINE Alu 9 98 -19 2 1120 6696 158 58 12 chr4 70153391 70155523 -85474597 - Lx5 LINE L1 -5 7045 4748 2 1120 612 144 10 79 chr4 70155526 70155668 -85474452 - Lx5 LINE L1 -1499 4644 4480 2 1120 24 32 0 0 chr4 70155723 70155754 -85474366 + AT_rich Low_complexity Low_complexity 1 31 0 2 1120 234 227 0 0 chr4 70156524 70156568 -85473552 + C-rich Low_complexity Low_complexity 1 44 0 2 1120 362 294 191 21 chr4 70157376 70157564 -85472556 + MLT1H LTR MaLR 5 224 -325 2 1120 712 292 0 23 chr4 70157641 70157855 -85472265 + B3 SINE B2 2 210 -6 2 1120 235 308 31 0 chr4 70157897 70157962 -85472158 + MLT1H LTR MaLR 300 366 -189 2 1120 1502 240 113 36 chr4 70157995 70158384 -85471736 + MTD LTR MaLR 1 419 0 2 1120 247 250 69 69 chr4 70158389 70158505 -85471615 + MLT1H LTR MaLR 432 547 -1 2 1120 338 333 0 0 chr4 70158732 70158828 -85471292 + PB1D10 SINE Alu 22 117 0 2 1120 667 237 30 0 chr4 70158835 70158970 -85471150 + B1_Mur4 SINE Alu 6 144 -6 2 1120 387 244 19 160 chr4 70159045 70159201 -85470919 + RSINE1 SINE B4 28 161 -4 2 1120 599 179 6 0 chr4 70159202 70159381 -85470739 + GA-rich Low_complexity Low_complexity 1 180 0 2 1120 1402 47 6 0 chr4 70159438 70159609 -85470511 - L1_Mus1 LINE L1 -243 6324 6153 2 1120 1764 40 0 26 chr4 70159609 70159838 -85470282 + L1_Mus1 LINE L1 6345 6567 0 2 1120 22 35 0 0 chr4 70159889 70159918 -85470202 + AT_rich Low_complexity Low_complexity 1 29 0 2 1120 323 222 40 10 chr4 70160088 70160188 -85469932 - L1MB3 LINE L1 0 6183 6081 2 1120 244 217 27 54 chr4 70160296 70160408 -85469712 + L1MC4a LINE L1 7012 7120 -762 2 1120 286 232 0 68 chr4 70160861 70160935 -85469185 + ID4 SINE ID 1 69 -14 2 1120 301 304 56 44 chr4 70161160 70161411 -85468709 + L1MC4a LINE L1 7517 7770 -112 2 1120 22 80 0 0 chr4 70161492 70161542 -85468578 + AT_rich Low_complexity Low_complexity 1 50 0 2 1120 494 285 32 38 chr4 70161733 70161890 -85468230 - Tigger5 DNA MER2_type -2235 171 16 2 1120 229 339 124 9 chr4 70161946 70162059 -85468061 + PB1 SINE Alu 2 127 0 2 1120 614 328 5 25 chr4 70162105 70162302 -85467818 + B3A SINE B2 3 195 -3 2 1120 238 259 83 90 chr4 70162595 70162739 -85467381 + L1MC LINE L1 5090 5232 -914 2 1120 426 247 12 0 chr4 70162808 70162893 -85467227 + B4 SINE B4 28 113 -179 2 1120 268 345 0 22 chr4 70163200 70163289 -85466831 + B4 SINE B4 206 292 0 2 1120 549 42 0 0 chr4 70163316 70163388 -85466732 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1120 24 0 0 0 chr4 70163672 70163696 -85466424 + AT_rich Low_complexity Low_complexity 1 24 0 2 1120 229 333 37 0 chr4 70165007 70165088 -85465032 + MIRb SINE MIR 19 102 -166 2 1120 2265 179 22 10 chr4 70166017 70166423 -85463697 - MTC LTR MaLR 0 421 11 2 1120 414 0 0 0 chr4 70167342 70167388 -85462732 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1120 474 18 0 0 chr4 70167391 70167446 -85462674 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1120 390 292 28 0 chr4 70167920 70168026 -85462094 + PB1D10 SINE Alu 2 110 -7 2 1120 366 244 0 24 chr4 70168033 70168117 -85462003 + ID4 SINE ID 2 83 0 2 1120 979 227 178 15 chr4 70168143 70168469 -85461651 - MTEb LTR MaLR 0 379 1 2 1120 269 232 93 21 chr4 70168469 70168566 -85461554 + L1MB2 LINE L1 5579 5682 -489 2 1120 548 285 135 89 chr4 70168575 70168902 -85461218 - ORR1E LTR MaLR -15 344 3 2 1120 507 17 0 0 chr4 70168955 70169015 -85461105 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1120 351 0 0 0 chr4 70169015 70169053 -85461067 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1120 248 281 109 15 chr4 70169067 70169204 -85460916 + L1MB2 LINE L1 5812 5961 -210 2 1120 3678 48 0 4 chr4 70169675 70170165 -85459955 - L1Md_F2 LINE L1 0 6582 6113 3 1120 988 229 19 0 chr4 70171565 70171770 -85458350 + B3 SINE B2 1 209 -7 3 1120 281 250 48 9 chr4 70172353 70172458 -85457662 + L1MC5 LINE L1 7710 7818 -143 3 1120 214 332 160 50 chr4 70173622 70174030 -85456090 + L2b LINE L2 2911 3364 -23 3 1120 233 197 81 16 chr4 70174161 70174223 -85455897 + ID4_ SINE ID 5 70 -13 3 1120 904 74 16 54 chr4 70174615 70174801 -85455319 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 3 1120 954 59 52 17 chr4 70174806 70174979 -85455141 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 3 1120 260 342 66 33 chr4 70175591 70175742 -85454378 + MIRb SINE MIR 35 190 -78 3 1120 572 301 11 46 chr4 70176158 70176184 -85453936 - B4A SINE B4 0 292 267 3 1120 354 80 0 0 chr4 70176184 70176234 -85453886 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1120 572 301 11 46 chr4 70176234 70176381 -85453739 - B4A SINE B4 -26 266 125 3 1120 386 311 123 11 chr4 70177526 70177705 -85452415 + MLT1N2 LTR MaLR 354 552 -10 3 1120 315 386 49 26 chr4 70177770 70177996 -85452124 + MIR SINE MIR 7 237 -25 3 1120 225 270 170 0 chr4 70177996 70178096 -85452024 - RMER6D LTR ERVK -508 212 96 3 1120 21 0 0 0 chr4 70178222 70178243 -85451877 + AT_rich Low_complexity Low_complexity 1 21 0 3 1120 220 236 11 11 chr4 70179109 70179172 -85450948 + MIRb SINE MIR 1 66 -202 3 1120 833 112 0 67 chr4 70179438 70179895 -85450225 + CT-rich Low_complexity Low_complexity 1 426 0 3 1120 381 264 8 109 chr4 70181285 70181404 -85448716 + PB1D10 SINE Alu 3 109 -8 3 1120 21 36 0 0 chr4 70181430 70181458 -85448662 + AT_rich Low_complexity Low_complexity 1 28 0 3 1120 21 0 0 0 chr4 70181560 70181581 -85448539 + AT_rich Low_complexity Low_complexity 1 21 0 3 1120 200 213 0 0 chr4 70181618 70181665 -85448455 + T-rich Low_complexity Low_complexity 1 47 0 3 1120 342 0 0 0 chr4 70182421 70182459 -85447661 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1120 25 83 0 0 chr4 70183024 70183084 -85447036 + AT_rich Low_complexity Low_complexity 1 60 0 3 1120 1896 299 52 16 chr4 70183436 70184352 -85445768 - L1_Mur3 LINE L1 -9 5871 4923 3 1120 260 261 154 14 chr4 70185578 70185723 -85444397 + MIRc SINE MIR 103 256 -6 3 1120 309 117 0 0 chr4 70185800 70185860 -85444260 + (T)n Simple_repeat Simple_repeat 1 60 0 3 1120 1141 75 0 7 chr4 70185861 70186009 -85444111 - B1_Mm SINE Alu 0 147 1 3 1120 550 53 27 0 chr4 70186079 70186154 -85443966 + L1Md_F2 LINE L1 5954 6030 -552 3 1120 2141 51 0 0 chr4 70186155 70186428 -85443692 - L1Md_F2 LINE L1 -424 6158 5886 3 1120 3198 59 0 10 chr4 70186429 70186842 -85443278 + L1Md_F2 LINE L1 6162 6570 -12 3 1120 4640 39 3 5 chr4 70186837 70187404 -85442716 + L1Md_F2 LINE L1 6014 6579 -3 3 1120 261 241 52 103 chr4 70189398 70189427 -85440693 + MIRb SINE MIR 121 147 -121 3 1120 293 284 12 12 chr4 70189427 70189509 -85440611 + ID4_ SINE ID 2 83 0 3 1120 261 241 52 103 chr4 70189509 70189576 -85440544 + MIRb SINE MIR 148 212 -56 3 1120 380 330 28 0 chr4 70190353 70190462 -85439658 + PB1 SINE Alu 3 114 -13 3 1120 406 263 76 8 chr4 70190990 70191109 -85439011 + ID_B1 SINE B4 87 213 -11 3 1120 438 328 30 78 chr4 70191669 70191940 -85438180 + L3 LINE CR1 3852 4109 -380 3 1120 234 0 0 0 chr4 70192995 70193021 -85437099 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1120 29 0 0 0 chr4 70193136 70193165 -85436955 + AT_rich Low_complexity Low_complexity 1 29 0 3 1120 287 311 66 28 chr4 70193813 70193825 -85436295 - ID_B1 SINE B4 0 224 115 3 1120 309 330 43 0 chr4 70193825 70193919 -85436201 - B1F SINE Alu -18 131 34 3 1120 24 0 0 0 chr4 70195966 70195990 -85434130 + GC_rich Low_complexity Low_complexity 1 24 0 3 1120 188 314 90 34 chr4 70196798 70196887 -85433233 + MIRc SINE MIR 125 218 -50 3 1120 267 128 93 19 chr4 70198115 70198179 -85431941 + MIR SINE MIR 91 161 -107 3 1120 252 0 0 0 chr4 70198467 70198495 -85431625 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1120 243 125 50 0 chr4 70198648 70198688 -85431432 - PB1D7 SINE Alu -7 113 72 3 1120 451 359 12 65 chr4 70198822 70198992 -85431128 - RSINE1 SINE B4 -2 163 3 3 1120 1132 281 71 21 chr4 70199421 70199759 -85430361 - MLT1A0 LTR MaLR 0 365 11 3 1120 423 245 59 0 chr4 70199771 70199873 -85430247 - MIR SINE MIR -110 152 45 3 1120 293 250 18 0 chr4 70200205 70200261 -85429859 + ID4 SINE ID 25 81 -2 3 1120 180 235 0 0 chr4 70200355 70200389 -85429731 - MIRb SINE MIR -212 56 23 3 1120 315 247 570 9 chr4 70201285 70201385 -85428735 + B3A SINE B2 2 157 -41 3 1120 215 204 0 0 chr4 70201410 70201454 -85428666 + GA-rich Low_complexity Low_complexity 2 45 0 3 1120 213 319 97 87 chr4 70202185 70202370 -85427750 - MIRb SINE MIR 0 262 76 3 1120 201 74 0 0 chr4 70204098 70204125 -85425995 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 3 1120 314 284 0 6 chr4 70204414 70204591 -85425529 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 3 1120 340 194 20 10 chr4 70204559 70204658 -85425462 + (CATA)n Simple_repeat Simple_repeat 4 103 0 3 1120 331 323 6 12 chr4 70204671 70204831 -85425289 + (CATA)n Simple_repeat Simple_repeat 4 162 0 3 1120 229 304 10 39 chr4 70204833 70205149 -85424971 + (CATATA)n Simple_repeat Simple_repeat 1 306 0 3 1120 217 230 10 10 chr4 70205208 70205309 -85424811 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 3 1120 189 226 0 0 chr4 70205360 70205413 -85424707 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1120 183 80 0 0 chr4 70205452 70205477 -85424643 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1120 2535 181 49 75 chr4 70205477 70206064 -85424056 + RMER15 LTR ERVL 4 575 0 3 1120 2611 258 6 46 chr4 70206066 70206156 -85423964 + RMER15-int LTR ERVL 1 86 -4913 3 1120 2990 131 54 8 chr4 70206156 70206657 -85423463 - RLTR28 LTR ERVL 0 524 1 3 1120 2611 258 6 46 chr4 70206657 70207223 -85422897 + RMER15-int LTR ERVL 87 631 -4368 3 1120 4274 238 93 11 chr4 70207206 70207987 -85422133 + RMER15-int LTR ERVL 753 1600 -3399 3 1120 973 171 131 0 chr4 70207987 70208186 -85421934 - URR1A DNA MER1_type 0 226 2 3 1120 4274 255 71 16 chr4 70208186 70208896 -85421224 + RMER15-int LTR ERVL 1601 2347 -2652 3 1120 323 174 0 104 chr4 70208929 70209006 -85421114 - RMER4B LTR ERVK -139 446 378 3 1120 1981 217 39 7 chr4 70209008 70209444 -85420676 - RodERV21-int LTR ERV1 -194 4797 4348 3 1120 1038 241 125 23 chr4 70209436 70209867 -85420253 - RodERV21-int LTR ERV1 -778 4213 3739 3 1120 1646 215 32 44 chr4 70212117 70212326 -85417794 - RodERV21-int LTR ERV1 -4000 991 779 3 1120 2644 30 172 0 chr4 70212326 70212664 -85417456 - MTA_Mm LTR MaLR 0 396 1 3 1120 1646 215 32 44 chr4 70212664 70212863 -85417257 - RodERV21-int LTR ERV1 -4213 778 588 3 1120 1016 228 4 31 chr4 70212852 70213078 -85417042 - RodERV21-int LTR ERV1 -4765 226 7 3 1120 2819 246 101 8 chr4 70213432 70214174 -85415946 + RMER15-int LTR ERVL 2343 3153 -1846 3 1120 1346 218 26 7 chr4 70214234 70214507 -85415613 + ORR1C2 LTR MaLR 5 282 -102 3 1120 3524 190 98 94 chr4 70214507 70215406 -85414714 + RMER19B LTR ERVK 1 902 0 3 1120 466 90 15 0 chr4 70215406 70215473 -85414647 + ORR1C2 LTR MaLR 278 345 -39 3 1120 4393 79 16 26 chr4 70215473 70216163 -85413957 - Lx3_Mus LINE L1 -1510 4376 3694 3 1120 10525 79 17 5 chr4 70216160 70218748 -85411372 + Lx3_Mus LINE L1 4384 7009 0 3 1120 307 182 0 0 chr4 70218763 70218818 -85411302 + ORR1C2 LTR MaLR 330 384 0 3 1120 3743 259 36 26 chr4 70218818 70219783 -85410337 + ORR1C2-int LTR MaLR 1 975 -395 3 1120 236 220 0 48 chr4 70219764 70219826 -85410294 + ORR1C2-int LTR MaLR 1241 1299 -71 3 1120 981 241 41 19 chr4 70220070 70220341 -85409779 + RMER15-int LTR ERVL 4251 4527 -472 3 1120 875 238 39 35 chr4 70220387 70220670 -85409450 - RLTR15 LTR ERVK -75 284 1 3 1120 701 305 83 29 chr4 70220670 70221089 -85409031 + Lx8 LINE L1 6591 7032 -441 3 1120 501 240 224 0 chr4 70221089 70221214 -85408906 + RMER15 LTR ERVL 2 154 -421 3 1120 1440 101 121 4 chr4 70221217 70221456 -85408664 + RMER6A LTR ERVK 1 267 -489 3 1120 2149 232 60 83 chr4 70221467 70222102 -85408018 + RMER19C LTR ERVK 47 611 0 3 1120 9350 166 10 16 chr4 70222102 70222385 -85407735 + MurERV4_19-int LTR ERVK 1 294 -5486 3 1120 1052 97 20 14 chr4 70222385 70222531 -85407589 + B1_Mus1 SINE Alu 1 147 -1 3 1120 9350 166 10 16 chr4 70222531 70223800 -85406320 + MurERV4_19-int LTR ERVK 295 1545 -4235 3 1120 666 100 98 18 chr4 70223800 70223912 -85406208 + RMER2 LTR ERV1 1 121 -446 3 1120 7992 73 21 5 chr4 70223912 70225022 -85405098 + L1_Mus3 LINE L1 5501 6638 0 3 1120 477 148 0 0 chr4 70225022 70225103 -85405017 + (GGA)n Simple_repeat Simple_repeat 1 81 0 3 1120 2638 151 2 28 chr4 70225129 70225553 -85404567 + RMER2 LTR ERV1 143 555 -12 3 1120 1197 90 18 0 chr4 70225554 70225720 -85404400 - L1_Mus1 LINE L1 -507 6060 5892 3 1120 1893 84 4 0 chr4 70225715 70225976 -85404144 + L1_Mm LINE L1 4093 4354 -1529 3 1120 10079 180 107 53 chr4 70225980 70229799 -85400321 - L1_Mur1 LINE L1 -1207 4679 676 3 1120 774 276 20 78 chr4 70229800 70230158 -85399962 - L1_Mur1 LINE L1 -6617 367 31 3 1120 640 184 7 7 chr4 70230208 70230356 -85399764 + CT-rich Low_complexity Low_complexity 2 149 0 3 1120 3905 135 37 12 chr4 70230426 70231069 -85399051 + MurERV4_19-int LTR ERVK 2903 3561 -2219 3 1120 2100 121 19 0 chr4 70231069 70231382 -85398738 + ORR1A2 LTR MaLR 1 319 -8 3 1120 6962 139 10 8 chr4 70231386 70232947 -85397173 + MurERV4_19-int LTR ERVK 3557 5166 -614 3 1120 1646 159 124 3 chr4 70232947 70233238 -85396882 + ORR1A3 LTR MaLR 1 326 0 3 1120 3210 201 92 33 chr4 70233239 70234078 -85396042 + ORR1A3-int LTR MaLR 2 889 -1074 3 1120 273 298 0 0 chr4 70234083 70234167 -85395953 + (TATG)n Simple_repeat Simple_repeat 4 87 0 3 1120 1671 160 27 14 chr4 70234168 70234460 -85395660 + RLTR17 LTR ERVK 1 296 -396 3 1120 647 227 61 41 chr4 70234431 70234578 -85395542 + RLTR17 LTR ERVK 543 692 0 3 1120 219 301 14 0 chr4 70234579 70234652 -85395468 + (TATG)n Simple_repeat Simple_repeat 2 75 0 3 1120 436 273 28 23 chr4 70234698 70234874 -85395246 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 3 1120 22 0 0 0 chr4 70235047 70235069 -85395051 + AT_rich Low_complexity Low_complexity 1 22 0 3 1120 1339 145 22 22 chr4 70235139 70235365 -85394755 + URR1A DNA MER1_type 1 226 0 3 1120 2154 174 70 3 chr4 70236740 70237109 -85393011 - ORR1B1 LTR MaLR 0 394 1 3 1120 585 323 20 52 chr4 70237486 70237813 -85392307 - RLTR14-int LTR ERV1 -3174 4427 4027 3 1120 1199 220 178 18 chr4 70237844 70237997 -85392123 + MTC LTR MaLR 1 175 -246 3 1120 237 33 0 0 chr4 70237997 70238027 -85392093 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 3 1120 1199 220 178 18 chr4 70238027 70238215 -85391905 + MTC LTR MaLR 176 396 -25 3 1120 326 248 46 27 chr4 70238883 70238993 -85391127 - RLTR14-int LTR ERV1 -2657 2406 2331 3 1120 449 267 85 45 chr4 70239090 70239290 -85390830 - RLTR14-int LTR ERV1 -4156 1161 954 3 1120 613 234 0 99 chr4 70239387 70239558 -85390562 - RLTR14-int LTR ERV1 -4400 917 764 3 1120 484 217 15 58 chr4 70239605 70239742 -85390378 - RLTR14-int LTR ERV1 -4740 577 447 3 1120 1114 307 25 25 chr4 70240153 70240554 -85389566 - RLTR14-int LTR ERV1 -4916 401 1 3 1120 682 239 14 7 chr4 70240554 70240697 -85389423 - RLTR14 LTR ERV1 -3 379 236 3 1120 528 262 24 8 chr4 70241168 70241291 -85388829 + B3A SINE B2 1 125 -73 3 1120 22 56 0 0 chr4 70241588 70241624 -85388496 + AT_rich Low_complexity Low_complexity 1 36 0 3 1120 5433 226 38 9 chr4 70242018 70243179 -85386941 - Lx6 LINE L1 0 7460 6266 3 1120 602 299 63 9 chr4 70243163 70243386 -85386734 + Lx6 LINE L1 5843 6077 -1383 3 1120 189 0 0 0 chr4 70243421 70243442 -85386678 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1120 625 153 30 53 chr4 70243442 70243573 -85386547 - L1_Mur3 LINE L1 -51 5829 5702 3 1120 457 307 44 19 chr4 70243581 70243787 -85386333 + RLTR16 LTR ERVK 24 234 -271 3 1120 5317 198 65 19 chr4 70244122 70245315 -85384805 - L1_Mur3 LINE L1 -169 5711 4464 3 1120 27024 66 1 1 chr4 70245528 70249683 -85380437 - L1Md_F2 LINE L1 -2 6580 2426 3 1120 3703 113 50 77 chr4 70249818 70250224 -85379896 + L1_Mm LINE L1 5184 5586 -297 3 1120 9019 30 1 0 chr4 70250224 70251218 -85378902 + L1Md_T LINE L1 5587 6581 -1 4 1120 3703 113 50 77 chr4 70251218 70251354 -85378766 + L1_Mm LINE L1 5587 5728 -155 3 1120 9069 30 0 0 chr4 70251354 70252349 -85377771 + L1Md_T LINE L1 5588 6582 0 4 1120 7564 126 22 20 chr4 70252349 70253554 -85376566 + Lx2A LINE L1 5727 6933 -75 4 1120 4917 83 2 71 chr4 70253685 70254557 -85375563 + L1Md_Gf LINE L1 483 1400 -4486 4 17 6669 95 35 15 chr4 70254555 70256359 -85373761 - L1Md_F LINE L1 -3779 2104 263 4 1121 7366 167 28 97 chr4 70256367 70258076 -85372044 + ORR1B1-int LTR MaLR 373 1963 0 4 1121 553 157 9 29 chr4 70258078 70258183 -85371937 + ORR1B1 LTR MaLR 36 138 -256 4 1121 766 248 91 122 chr4 70258603 70259043 -85371077 - RLTR11B LTR ERVK -16 512 32 4 1121 246 32 0 0 chr4 70259047 70259078 -85371042 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1121 7909 90 9 10 chr4 70259383 70260821 -85369299 - L1_Mus3 LINE L1 0 6638 5198 4 1121 1966 122 19 19 chr4 70260809 70261126 -85368994 + L1_Mus3 LINE L1 4904 5220 -663 4 1121 3069 233 81 73 chr4 70261168 70262190 -85367930 - L1_Mur3 LINE L1 -6646 1066 37 4 1121 241 256 153 76 chr4 70262955 70263086 -85367034 + B1_Mur1 SINE Alu 6 146 -1 4 1121 629 254 91 139 chr4 70263879 70264088 -85366032 - B3 SINE B2 0 216 1 4 1121 504 0 0 0 chr4 70264548 70264604 -85365516 + (CAAT)n Simple_repeat Simple_repeat 4 59 0 4 1121 188 67 33 0 chr4 70264606 70264636 -85365484 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1121 362 329 49 35 chr4 70264661 70264803 -85365317 - RSINE1 SINE B4 -19 146 3 4 1121 461 280 106 0 chr4 70264850 70264982 -85365138 - B1_Mur4 SINE Alu 0 150 5 4 1121 600 230 0 0 chr4 70264985 70265098 -85365022 - B1_Mus2 SINE Alu -33 114 2 4 1121 350 215 33 65 chr4 70267623 70267807 -85362313 + CT-rich Low_complexity Low_complexity 1 178 0 4 1121 422 258 31 25 chr4 70267835 70268074 -85362046 + CT-rich Low_complexity Low_complexity 1 240 0 4 1121 265 287 28 28 chr4 70268176 70268355 -85361765 + CT-rich Low_complexity Low_complexity 1 179 0 4 1121 343 352 0 11 chr4 70268382 70268563 -85361557 + CT-rich Low_complexity Low_complexity 2 180 0 4 1121 464 326 27 44 chr4 70268571 70268796 -85361324 - ID_B1 SINE B4 -3 221 1 4 1121 558 85 0 0 chr4 70269112 70269194 -85360926 + L1_Mus2 LINE L1 6484 6565 -1 4 1121 964 304 131 57 chr4 70269761 70270513 -85359607 + RMER15-int LTR ERVL 825 1631 -3368 4 1121 4931 184 30 146 chr4 70270582 70272273 -85357847 + Lx5 LINE L1 5042 6550 -500 4 1121 437 272 146 66 chr4 70272329 70272616 -85357504 + RMER20B LTR ERVK 90 399 -228 4 1121 2073 238 67 24 chr4 70272740 70273232 -85356888 + Lx5 LINE L1 6529 7041 -9 4 1121 474 204 177 0 chr4 70273252 70273365 -85356755 - B1_Mur1 SINE Alu -11 138 6 4 1121 419 194 140 20 chr4 70273789 70273889 -85356231 + PB1D9 SINE Alu 9 120 0 4 1121 285 234 47 0 chr4 70274082 70274146 -85355974 - RMER15-int LTR ERVL -310 4689 4623 4 1121 354 70 0 0 chr4 70274188 70274231 -85355889 + L1Md_T LINE L1 5544 5586 -297 4 1121 8992 37 0 0 chr4 70274231 70275227 -85354893 + L1Md_T LINE L1 5587 6582 0 4 1121 2644 180 87 133 chr4 70275440 70276036 -85354084 - RMER17D LTR ERVK -2 887 345 4 1121 360 0 0 0 chr4 70276036 70276076 -85354044 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 4 1121 2644 180 87 133 chr4 70276076 70276409 -85353711 - RMER17D LTR ERVK -545 344 1 4 1121 351 0 0 0 chr4 70276453 70276492 -85353628 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1121 255 99 55 27 chr4 70276492 70276565 -85353555 + (CAGAGA)n Simple_repeat Simple_repeat 3 77 0 4 1121 380 234 73 18 chr4 70276585 70276694 -85353426 - MTD LTR MaLR -302 117 3 4 1121 222 128 0 0 chr4 70276828 70276867 -85353253 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1121 756 302 74 58 chr4 70276870 70277264 -85352856 + MT2A LTR ERVL 126 525 -8 4 1121 210 298 35 0 chr4 70277294 70277351 -85352769 - PB1D9 SINE Alu -59 61 3 4 1121 432 195 13 13 chr4 70277351 70277429 -85352691 - ID4_ SINE ID -2 81 4 4 1121 590 306 133 30 chr4 70277494 70277757 -85352363 - B4A SINE B4 0 292 3 4 1121 195 162 0 0 chr4 70277757 70277794 -85352326 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 4 1121 844 46 0 0 chr4 70278574 70278682 -85351438 - L1_Mus2 LINE L1 -2 6564 6457 4 1121 657 314 23 68 chr4 70278743 70278939 -85351181 + B4A SINE B4 1 182 -110 4 1121 189 0 0 0 chr4 70278939 70278960 -85351160 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1121 657 314 23 68 chr4 70278960 70279026 -85351094 + B4A SINE B4 183 250 -42 4 1121 381 58 0 0 chr4 70279076 70279128 -85350992 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1121 469 317 47 76 chr4 70279251 70279487 -85350633 - MLT1K LTR MaLR -29 566 338 4 1121 517 252 58 51 chr4 70279597 70279735 -85350385 + ID_B1 SINE B4 85 223 -1 4 1121 596 246 85 0 chr4 70279764 70279894 -85350226 + B1_Mur1 SINE Alu 7 147 -2 4 1121 361 221 0 25 chr4 70280190 70280269 -85349851 + B3A SINE B2 3 79 -119 4 1121 605 296 41 41 chr4 70280272 70280466 -85349654 + ID_B1 SINE B4 23 216 -8 4 1121 555 289 19 33 chr4 70280973 70281184 -85348936 - B3 SINE B2 -7 209 2 4 1121 474 285 32 24 chr4 70281191 70281317 -85348803 - B1_Mur1 SINE Alu -9 140 14 4 1121 806 271 40 15 chr4 70281302 70281504 -85348616 - ID_B1 SINE B4 -17 207 1 4 1121 298 86 36 24 chr4 70281589 70281672 -85348448 + (CAAAAA)n Simple_repeat Simple_repeat 1 84 0 4 1121 422 261 46 3 chr4 70281718 70281852 -85348268 + PB1D10 SINE Alu 1 148 -1 4 1121 734 245 41 32 chr4 70281999 70282202 -85347918 + B3A SINE B2 1 195 0 4 1121 351 293 104 69 chr4 70282275 70282477 -85347643 + ID_B1 SINE B4 1 209 -15 4 1121 1535 199 138 16 chr4 70282624 70282987 -85347133 - MTC LTR MaLR -14 407 1 4 1121 2046 158 34 69 chr4 70283302 70283624 -85346496 + ORR1B1 LTR MaLR 2 314 -80 4 1121 3452 25 2 0 chr4 70283624 70284019 -85346101 - MTA_Mm LTR MaLR 0 396 1 4 1121 2046 158 34 69 chr4 70284019 70284103 -85346017 + ORR1B1 LTR MaLR 315 394 0 4 1121 212 156 0 0 chr4 70284103 70284133 -85345987 + B4 SINE B4 21 50 -242 4 1121 467 274 8 0 chr4 70284154 70284267 -85345853 + B4A SINE B4 117 230 -62 4 1121 312 348 58 124 chr4 70284267 70284526 -85345594 + B4 SINE B4 2 243 -49 4 1121 549 30 0 0 chr4 70284569 70284636 -85345484 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1121 270 0 0 0 chr4 70284636 70284665 -85345455 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1121 304 272 62 0 chr4 70284821 70284902 -85345218 - ID_B1 SINE B4 -14 210 125 4 1121 2003 125 63 29 chr4 70284911 70285258 -85344862 - ORR1B2 LTR MaLR -8 359 1 4 1121 233 310 83 14 chr4 70285368 70285440 -85344680 - PB1D10 SINE Alu -39 78 2 4 1121 1407 284 40 90 chr4 70286073 70287188 -85342932 - RMER1C Other Other -463 879 67 4 1121 277 274 137 0 chr4 70287415 70287517 -85342603 - RMER1B Other Other -354 712 597 4 1121 21 0 0 0 chr4 70287964 70287985 -85342135 + AT_rich Low_complexity Low_complexity 1 21 0 4 1121 563 225 7 72 chr4 70288484 70288637 -85341483 + B1_Mur2 SINE Alu 1 143 -6 4 1121 365 294 95 7 chr4 70288672 70288688 -85341432 + B1F SINE Alu 1 86 -63 4 1121 377 270 54 9 chr4 70288688 70288800 -85341320 + ID_B1 SINE B4 99 215 -9 4 1121 241 242 57 57 chr4 70289189 70289259 -85340861 + PB1D10 SINE Alu 41 110 -7 4 1121 701 62 259 0 chr4 70289579 70289691 -85340429 + B1_Mus1 SINE Alu 2 142 -6 4 1121 360 97 0 0 chr4 70289694 70289756 -85340364 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1121 1632 202 21 21 chr4 70289756 70290085 -85340035 + ORR1B2 LTR MaLR 39 367 0 4 1121 586 196 0 0 chr4 70290338 70290435 -85339685 + B3 SINE B2 4 100 -116 4 1121 688 158 13 0 chr4 70290643 70290795 -85339325 + CT-rich Low_complexity Low_complexity 2 155 0 4 1121 210 354 0 52 chr4 70290798 70290848 -85339272 + T-rich Low_complexity Low_complexity 118 166 0 4 1121 303 28 0 0 chr4 70290848 70290884 -85339236 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 4 1121 848 87 16 0 chr4 70290887 70291013 -85339107 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 4 1121 449 317 0 48 chr4 70291013 70291172 -85338948 + polypyrimidine Low_complexity Low_complexity 1 151 0 4 1121 1326 191 12 218 chr4 70291172 70291399 -85338721 - ORR1C2 LTR MaLR -2 382 173 4 1121 537 96 32 0 chr4 70291399 70291493 -85338627 + (TA)n Simple_repeat Simple_repeat 2 98 0 4 1121 1326 191 12 218 chr4 70291493 70291746 -85338374 - ORR1C2 LTR MaLR -212 172 1 4 1121 449 317 0 48 chr4 70291746 70291790 -85338330 + polypyrimidine Low_complexity Low_complexity 1 38 0 4 1121 503 351 8 0 chr4 70291818 70292059 -85338061 + CT-rich Low_complexity Low_complexity 1 243 0 4 1121 1769 128 33 63 chr4 70292140 70292474 -85337646 - ORR1B1 LTR MaLR 0 394 71 4 1121 628 307 92 43 chr4 70292558 70293158 -85336962 - L1_Rod LINE L1 -726 5121 4493 4 1121 1233 216 70 38 chr4 70293158 70293528 -85336592 - ORR1C2 LTR MaLR 0 384 3 4 1121 1345 247 81 47 chr4 70293530 70293826 -85336294 - ORR1C2-int LTR MaLR 0 1370 984 4 1121 389 231 26 0 chr4 70293826 70293904 -85336216 + MT2B LTR ERVL 452 531 -70 4 1121 1345 247 81 47 chr4 70293904 70294003 -85336117 - ORR1C2-int LTR MaLR 0 983 852 4 1121 330 365 0 11 chr4 70294006 70294186 -85335934 + CT-rich Low_complexity Low_complexity 2 179 0 4 1121 268 393 0 0 chr4 70294248 70294393 -85335727 + CT-rich Low_complexity Low_complexity 2 146 0 4 1121 490 272 124 97 chr4 70294539 70295207 -85334913 - L1_Rod LINE L1 -820 5027 4342 4 1121 283 364 0 9 chr4 70295307 70295418 -85334702 + B3 SINE B2 103 212 -4 4 1121 216 97 0 0 chr4 70295943 70295974 -85334146 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4 1121 272 48 24 0 chr4 70296676 70296718 -85333402 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1121 333 0 0 0 chr4 70296718 70296754 -85333366 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1121 342 323 40 10 chr4 70296818 70297018 -85333102 + L1M2 LINE L1 4430 4635 -1508 4 1121 628 266 83 71 chr4 70297048 70297199 -85332921 + L1_Rod LINE L1 4579 4744 -1103 4 1121 411 21 0 0 chr4 70297199 70297247 -85332873 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1121 628 266 83 71 chr4 70297247 70297491 -85332629 + L1_Rod LINE L1 4745 4979 -868 4 1121 333 312 9 0 chr4 70297491 70297603 -85332517 + CT-rich Low_complexity Low_complexity 1 113 0 4 1121 559 117 19 0 chr4 70297757 70297860 -85332260 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1121 233 238 16 16 chr4 70297961 70298085 -85332035 + GA-rich Low_complexity Low_complexity 2 125 0 5 1121 319 296 121 50 chr4 70298095 70298301 -85331819 + HAL1-3A_ME LINE L1 2281 2447 -411 5 1121 307 268 7 35 chr4 70298354 70298641 -85331479 + GA-rich Low_complexity Low_complexity 1 278 0 5 1121 215 222 12 0 chr4 70298652 70298733 -85331387 + GA-rich Low_complexity Low_complexity 1 82 0 5 1121 182 211 9 28 chr4 70298792 70298899 -85331221 + GA-rich Low_complexity Low_complexity 2 106 0 5 1121 451 309 12 6 chr4 70299020 70299189 -85330931 + GA-rich Low_complexity Low_complexity 1 170 0 5 1121 382 318 6 11 chr4 70299306 70299481 -85330639 + GA-rich Low_complexity Low_complexity 1 174 0 5 1121 504 48 0 0 chr4 70299488 70299551 -85330569 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1121 1780 168 89 19 chr4 70299582 70299941 -85330179 - ORR1C2 LTR MaLR 0 384 1 5 1121 511 216 6 6 chr4 70299986 70300149 -85329971 + GA-rich Low_complexity Low_complexity 1 163 0 5 1121 261 335 13 7 chr4 70300170 70300320 -85329800 + GA-rich Low_complexity Low_complexity 1 151 0 5 1121 551 102 11 0 chr4 70300344 70300432 -85329688 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1121 1101 241 11 173 chr4 70300572 70300924 -85329196 - MTC LTR MaLR -21 400 106 5 1121 3683 262 36 13 chr4 70300924 70301065 -85329055 - Lx5 LINE L1 -42 7008 6874 5 1121 183 42 0 0 chr4 70301065 70301089 -85329031 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1121 3683 262 36 13 chr4 70301089 70301946 -85328174 - Lx5 LINE L1 -177 6873 5989 5 1121 332 196 0 0 chr4 70301948 70302004 -85328116 - Lx9 LINE L1 -1214 6430 6375 5 1121 559 67 22 0 chr4 70302016 70302105 -85328015 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1121 5822 207 95 50 chr4 70302151 70304488 -85325632 - Lx9 LINE L1 -1400 6244 3769 5 1121 356 398 16 0 chr4 70304651 70304774 -85325346 + RSINE1 SINE B4 39 163 -2 5 1121 581 331 0 0 chr4 70305702 70305856 -85324264 - RSINE1 SINE B4 -6 159 6 5 1121 666 272 61 61 chr4 70306167 70306347 -85323773 + B3A SINE B2 3 182 -16 5 1121 923 236 19 19 chr4 70306370 70306586 -85323534 + B3 SINE B2 1 216 0 5 1121 346 211 46 15 chr4 70306610 70306740 -85323380 + Lx9 LINE L1 7510 7643 -1 5 1121 242 271 98 83 chr4 70306960 70307093 -85323027 + ORR1D2 LTR MaLR 140 274 -96 5 1121 239 304 0 34 chr4 70307117 70307236 -85322884 + GA-rich Low_complexity Low_complexity 2 116 0 5 1121 221 151 19 0 chr4 70307249 70307302 -85322818 + GA-rich Low_complexity Low_complexity 3 56 0 5 1121 1573 247 93 0 chr4 70308475 70308948 -85321172 - Lx9 LINE L1 -349 7295 6779 5 1121 840 231 108 6 chr4 70308924 70309238 -85320882 + Lx9 LINE L1 7299 7644 0 5 1121 4738 60 0 0 chr4 70312629 70313261 -85316859 - L1Md_F3 LINE L1 -575 5308 4677 5 1121 2052 56 4 0 chr4 70313248 70313517 -85316603 + L1Md_F3 LINE L1 5317 5586 -297 5 1121 8067 39 2 5 chr4 70313517 70314504 -85315616 + L1Md_F3 LINE L1 5587 6570 -14 5 1121 388 91 15 15 chr4 70315514 70315581 -85314539 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1121 348 335 57 25 chr4 70315943 70316102 -85314018 - MIR SINE MIR -78 184 21 5 1121 332 294 18 44 chr4 70317184 70317211 -85312909 - ID_B1 SINE B4 -22 202 92 5 1121 386 210 16 13 chr4 70317211 70317298 -85312822 - PB1D10 SINE Alu -20 100 11 5 1121 27 49 0 0 chr4 70318231 70318272 -85311848 + AT_rich Low_complexity Low_complexity 1 41 0 5 1121 2426 124 14 29 chr4 70318540 70318955 -85311165 + RLTR9E LTR ERVK 1 409 0 5 1121 3175 220 38 40 chr4 70318956 70319804 -85310316 + ETnERV2-int LTR ERVK 2 847 -2467 5 1121 3255 64 5 0 chr4 70319807 70320244 -85309876 - L1_Mm LINE L1 -742 5141 4703 5 1121 3885 31 0 0 chr4 70320244 70320697 -85309423 + L1Md_F2 LINE L1 6127 6579 -3 5 1121 15104 201 48 44 chr4 70320697 70323334 -85306786 + ETnERV2-int LTR ERVK 860 3878 -3528 5 1121 185 186 47 0 chr4 70323334 70323377 -85306743 - L4 LINE RTE -1231 798 754 5 1121 15104 201 48 44 chr4 70323377 70325597 -85304523 + ETnERV2-int LTR ERVK 3879 6422 -984 5 1121 447 84 0 53 chr4 70325816 70325891 -85304229 + ETnERV2-int LTR ERVK 7333 7403 -3 5 1121 2577 114 10 5 chr4 70325891 70326278 -85303842 + RLTR9E LTR ERVK 19 407 -2 5 1121 879 142 7 0 chr4 70327100 70327255 -85302865 - Lx2 LINE L1 -626 5251 5096 5 1121 7930 148 27 23 chr4 70327251 70329011 -85301109 + Lx2 LINE L1 5233 6990 -7 5 1121 216 111 0 0 chr4 70329011 70329047 -85301073 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 1121 342 45 0 0 chr4 70329092 70329136 -85300984 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1121 22 0 0 0 chr4 70329174 70329196 -85300924 + AT_rich Low_complexity Low_complexity 1 22 0 5 1121 675 117 0 0 chr4 70330177 70330280 -85299840 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 5 1121 5916 180 32 61 chr4 70330330 70331405 -85298715 + L1_Mur2 LINE L1 2282 3325 -2552 5 1121 222 37 0 0 chr4 70331405 70331432 -85298688 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1121 5916 180 32 61 chr4 70331432 70331578 -85298542 + L1_Mur2 LINE L1 3326 3475 -2402 5 1121 183 42 0 0 chr4 70331578 70331602 -85298518 + (CCA)n Simple_repeat Simple_repeat 1 24 0 5 1121 5916 180 32 61 chr4 70331602 70331892 -85298228 + L1_Mur2 LINE L1 3476 3750 -2127 5 1121 617 175 27 20 chr4 70331899 70332045 -85298075 + Lx5 LINE L1 5873 6019 -1031 5 1121 1575 250 57 68 chr4 70332045 70332763 -85297357 - RMER13B LTR ERVK -10 948 329 5 1121 1292 233 47 87 chr4 70332766 70333190 -85296930 + Lx5 LINE L1 6644 7050 0 5 1121 429 20 0 0 chr4 70333625 70333675 -85296445 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1121 353 305 99 26 chr4 70333952 70334144 -85295976 - L1M5 LINE L1 -2998 3148 2943 5 1121 2965 193 117 12 chr4 70334406 70335062 -85295058 - RMER13B LTR ERVK 0 908 184 5 1121 3825 216 31 14 chr4 70335551 70336453 -85293667 - Lx9 LINE L1 -83 7561 6645 5 1121 783 113 9 0 chr4 70336459 70336574 -85293546 + ORR1C1 LTR MaLR 263 378 0 5 1121 28 0 0 0 chr4 70336701 70336729 -85293391 + AT_rich Low_complexity Low_complexity 1 28 0 5 1121 6710 184 30 5 chr4 70338319 70339887 -85290233 - Lx4B LINE L1 -36 7022 5415 5 1121 4027 159 137 20 chr4 70339889 70340677 -85289443 + RLTR25A LTR ERVK 3 892 -211 5 1121 789 81 0 0 chr4 70340677 70340800 -85289320 + (CA)n Simple_repeat Simple_repeat 2 124 0 5 1121 4027 169 138 43 chr4 70340800 70340954 -85289166 + RLTR25A LTR ERVK 821 1027 -1 5 1121 2850 131 28 26 chr4 70340954 70341495 -85288625 - Lx4B LINE L1 -457 5420 4879 5 1121 1970 179 7 2 chr4 70341491 70341910 -85288210 + L1_Mur2 LINE L1 1370 1790 -4087 5 1121 1165 188 4 12 chr4 70341901 70342160 -85287960 + L1_Mur2 LINE L1 3418 3674 -2203 5 1121 1787 196 27 12 chr4 70342162 70342640 -85287480 - L1_Mur2 LINE L1 -4515 1362 882 5 1121 510 61 0 0 chr4 70343410 70343476 -85286644 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1121 1077 213 41 88 chr4 70343476 70343763 -85286357 - RLTR23 LTR ERV1 -58 372 98 5 1121 425 190 13 0 chr4 70343805 70343884 -85286236 - RLTR23 LTR ERV1 -327 103 24 5 1121 3682 35 2 5 chr4 70343937 70344374 -85285746 + RLTR10C LTR ERVK 1 436 0 5 1121 357 159 28 28 chr4 70344487 70344558 -85285562 + RMER12 LTR ERVK 1 71 -1777 5 1121 294 95 0 0 chr4 70344560 70344602 -85285518 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 5 1121 3681 184 79 35 chr4 70344602 70345801 -85284319 + RMER12 LTR ERVK 75 1848 0 5 1121 583 285 36 46 chr4 70345801 70346081 -85284039 - RLTR6-int LTR ERV1 -162 7616 7340 5 1121 1032 314 35 27 chr4 70347004 70347491 -85282629 - MuRRS4-int LTR ERV1 -1046 4017 3527 5 1121 549 370 57 54 chr4 70347890 70349106 -85281014 - MMERGLN-int LTR ERV1 -3134 4422 3196 5 1121 6401 113 17 10 chr4 70349106 70350082 -85280038 + RLTR13C1 LTR ERVK 1 983 0 5 1121 549 370 57 54 chr4 70350082 70350296 -85279824 - MMERGLN-int LTR ERV1 -4361 3195 2987 5 1121 334 373 54 45 chr4 70350344 70350768 -85279352 - MMERGLN-int LTR ERV1 -5821 1735 1308 5 1121 593 161 84 8 chr4 70351808 70351927 -85278193 - RLTR23 LTR ERV1 0 430 303 5 1121 536 275 18 64 chr4 70352465 70352636 -85277484 + RSINE1 SINE B4 3 165 0 5 1121 339 312 54 0 chr4 70353438 70353550 -85276570 - Lx8 LINE L1 -251 7222 7105 5 1121 1098 231 158 17 chr4 70353558 70353837 -85276283 - Lx7 LINE L1 -1440 6256 5939 5 1121 657 114 0 0 chr4 70353837 70353942 -85276178 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 1121 1098 231 158 17 chr4 70353942 70354080 -85276040 - Lx7 LINE L1 -1758 5938 5781 5 1121 7350 63 9 3 chr4 70354072 70355187 -85274933 - L1Md_F2 LINE L1 -15 6567 5447 5 1121 33160 77 5 10 chr4 70355188 70361386 -85268734 - L1Md_F2 LINE L1 0 6582 420 5 1121 183 140 51 34 chr4 70361442 70361501 -85268619 + CT-rich Low_complexity Low_complexity 2 61 0 5 1121 257 150 0 0 chr4 70361528 70361568 -85268552 - Lx8 LINE L1 -1200 6273 6234 5 1121 230 241 0 0 chr4 70361710 70361764 -85268356 + (TGG)n Simple_repeat Simple_repeat 3 56 0 5 1121 582 191 75 90 chr4 70362323 70362524 -85267596 - Lx7 LINE L1 -38 7658 7461 5 1121 247 82 20 20 chr4 70362562 70362584 -85267536 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 1121 234 0 0 0 chr4 70362584 70362610 -85267510 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1121 247 82 20 20 chr4 70362610 70362637 -85267483 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1121 629 76 11 0 chr4 70362638 70362730 -85267390 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1121 7788 44 2 1 chr4 70362747 70364105 -85266015 - L1Md_F2 LINE L1 -1 6581 5223 5 1121 1159 204 0 0 chr4 70364108 70364333 -85265787 - Lx7 LINE L1 -658 7038 6814 5 1121 672 213 0 0 chr4 70364337 70364464 -85265656 - Lx7 LINE L1 -1947 5749 5623 5 1121 301 227 39 58 chr4 70364789 70364892 -85265228 + MLT1A1 LTR MaLR 306 406 -2 5 1121 294 282 169 77 chr4 70365220 70365286 -85264834 + RLTR15 LTR ERVK 1 78 -375 5 1121 3250 54 37 2 chr4 70365286 70365716 -85264404 - L1Md_F3 LINE L1 0 6584 6140 5 1121 311 266 161 55 chr4 70365716 70366089 -85264031 + RLTR15 LTR ERVK 42 568 0 5 1121 369 0 0 0 chr4 70368344 70368385 -85261735 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1121 354 289 200 0 chr4 70368385 70368520 -85261600 - RSINE1 SINE B4 -1 164 3 5 1121 334 298 123 50 chr4 70368812 70369031 -85261089 + L1MCb LINE L1 30 264 -5781 5 1121 302 303 71 80 chr4 70369076 70369288 -85260832 + L1MCb LINE L1 349 558 -5487 5 1121 252 252 40 124 chr4 70369686 70369863 -85260257 + RMER10A LTR ERVL 118 279 -163 5 1121 333 0 0 0 chr4 70369888 70369925 -85260195 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1121 486 188 0 0 chr4 70369962 70370058 -85260062 + CT-rich Low_complexity Low_complexity 1 96 0 5 1121 411 73 0 0 chr4 70370150 70370205 -85259915 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1121 180 111 0 0 chr4 70371007 70371034 -85259086 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1121 27 49 0 0 chr4 70371831 70371872 -85258248 + AT_rich Low_complexity Low_complexity 1 41 0 5 1121 338 302 33 64 chr4 70372517 70372660 -85257460 + MTE2b LTR MaLR 1 142 -277 5 1121 1084 328 102 9 chr4 70372620 70373042 -85257078 + MT2A LTR ERVL 73 533 0 5 1121 4926 50 2 0 chr4 70373445 70374050 -85256070 - L1Md_F2 LINE L1 0 6582 5977 5 1121 216 0 0 0 chr4 70375816 70375840 -85254280 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1121 1119 321 81 68 chr4 70377331 70377661 -85252459 + Lx9 LINE L1 6138 6458 -1186 5 1121 1381 182 192 3 chr4 70377661 70377969 -85252151 - ORR1B2 LTR MaLR -1 366 1 5 1121 1119 321 81 68 chr4 70377969 70378829 -85251291 + Lx9 LINE L1 6459 7344 -300 5 1121 2998 77 14 9 chr4 70378834 70379253 -85250867 - BGLII LTR ERVK 0 421 1 5 1121 2539 191 117 9 chr4 70379253 70379986 -85250134 - MYSERV16_I-int LTR ERVK 0 2326 1515 5 1121 266 80 0 0 chr4 70379986 70380036 -85250084 + L1_Mus4 LINE L1 6583 6632 -4 5 1121 757 149 15 77 chr4 70380067 70380263 -85249857 - RMER3D-int LTR ERVK -734 2108 1925 5 1121 679 168 32 51 chr4 70380264 70380421 -85249699 - RMER3D-int LTR ERVK -1148 1694 1541 5 1121 1715 179 133 22 chr4 70380461 70380947 -85249173 - RMER3D-int LTR ERVK -1309 1533 1014 5 1121 861 120 0 0 chr4 70380975 70381108 -85249012 + (TCCCC)n Simple_repeat Simple_repeat 3 135 0 6 1121 801 183 65 20 chr4 70381111 70381404 -85248716 - RMER3D-int LTR ERVK -2005 837 340 6 1121 504 116 0 0 chr4 70381432 70381520 -85248600 - RMER3D-int LTR ERVK -2279 563 489 6 1121 2871 72 45 2 chr4 70381920 70382324 -85247796 - BGLII LTR ERVK 0 421 1 6 1121 894 288 29 63 chr4 70383982 70384360 -85245760 - RodERV21-int LTR ERV1 -3917 1074 710 6 140 22102 87 6 13 chr4 70385446 70390478 -85239642 + L1Md_F2 LINE L1 573 5585 -298 6 1122 7264 82 3 3 chr4 70390479 70391462 -85238658 + L1Md_F2 LINE L1 5587 6569 -13 6 1122 40 21 0 0 chr4 70391943 70391990 -85238130 + AT_rich Low_complexity Low_complexity 1 47 0 6 1122 244 307 0 0 chr4 70392051 70392126 -85237994 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1122 216 0 0 0 chr4 70393346 70393370 -85236750 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1122 241 276 12 62 chr4 70393370 70393451 -85236669 - LTR88b LTR Gypsy? -460 377 301 6 1122 464 302 78 0 chr4 70395186 70395315 -85234805 + ID_B1 SINE B4 79 217 -7 6 1122 225 108 0 0 chr4 70395332 70395369 -85234751 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1122 4698 223 73 27 chr4 70395868 70397033 -85233087 - Lx9 LINE L1 -15 7629 6411 6 1122 7690 83 17 4 chr4 70397026 70398821 -85231299 + L1_Mus2 LINE L1 4739 6566 0 6 1122 1054 222 13 13 chr4 70399538 70399766 -85230354 + RLTR12B LTR ERVK 264 491 -37 6 1122 1314 250 88 17 chr4 70399768 70400175 -85229945 - L1_Rod LINE L1 -6583 589 154 6 1122 444 286 0 0 chr4 70400176 70400316 -85229804 + (CTAG)n Simple_repeat Simple_repeat 4 143 0 6 1122 329 311 44 40 chr4 70400319 70400609 -85229511 - L1_Rod LINE L1 -6867 305 15 6 1122 287 314 101 13 chr4 70400797 70400955 -85229165 - RMER12 LTR ERVK -471 851 680 6 1122 540 0 0 0 chr4 70401745 70401805 -85228315 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1122 21 36 0 0 chr4 70403128 70403156 -85226964 + AT_rich Low_complexity Low_complexity 1 28 0 6 1122 296 264 226 43 chr4 70403525 70403640 -85226480 - B3A SINE B2 -53 142 7 6 1122 516 297 20 0 chr4 70403746 70403894 -85226226 - RSINE1 SINE B4 -5 160 10 6 1122 798 156 0 48 chr4 70404929 70405118 -85225002 + GA-rich Low_complexity Low_complexity 1 180 0 6 1122 1540 3 0 7 chr4 70405834 70406122 -85223998 + (TTC)n Simple_repeat Simple_repeat 1 285 0 6 1122 516 72 20 30 chr4 70406155 70406255 -85223865 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 1122 22 0 0 0 chr4 70406736 70406758 -85223362 + AT_rich Low_complexity Low_complexity 1 22 0 6 1122 4894 92 10 3 chr4 70407483 70408172 -85221948 - Lx3_Mus LINE L1 -2 7007 6314 6 1122 2361 182 43 77 chr4 70408515 70409122 -85220998 + RMER6C LTR ERVK 103 688 -2 6 1122 723 108 0 0 chr4 70409391 70409511 -85220609 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 1122 617 25 13 0 chr4 70409775 70409854 -85220266 + (TTCTC)n Simple_repeat Simple_repeat 4 83 0 6 1122 225 119 0 0 chr4 70410170 70410212 -85219908 + (CCAA)n Simple_repeat Simple_repeat 1 42 0 6 1122 369 0 0 0 chr4 70410246 70410287 -85219833 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1122 813 331 100 12 chr4 70410297 70410891 -85219229 - L1MA6 LINE L1 -370 5930 5292 6 1122 345 346 42 12 chr4 70411089 70411363 -85218757 - L1MA6 LINE L1 -951 4896 4628 6 1122 17558 164 67 17 chr4 70411410 70412915 -85217205 + L1Md_F LINE L1 364 1952 -3931 6 1122 5023 29 2 3 chr4 70412915 70413507 -85216613 + L1Md_F2 LINE L1 5990 6580 -2 6 1122 17558 128 44 20 chr4 70413507 70415852 -85214268 + L1Md_F LINE L1 1953 4381 -1502 6 1122 5384 89 28 1 chr4 70415846 70416596 -85213524 - L1_Mus3 LINE L1 -37 6601 5832 6 1122 666 126 0 0 chr4 70416588 70416691 -85213429 + L1Md_F LINE L1 5036 5138 -745 6 1122 37335 45 2 2 chr4 70416718 70422904 -85207216 - L1Md_T LINE L1 -2 6583 302 6 1122 4687 121 8 14 chr4 70423045 70423769 -85206351 + L1Md_F LINE L1 5133 5852 -31 6 1122 369 266 12 34 chr4 70423789 70423962 -85206158 - L1MEf LINE L1 -4000 3102 2925 6 1122 295 293 70 19 chr4 70424240 70424509 -85205611 - L1MEf LINE L1 -2137 2637 2399 6 1122 381 43 0 0 chr4 70424914 70424961 -85205159 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1122 265 222 26 65 chr4 70424963 70425040 -85205080 - MT2A LTR ERVL -74 459 386 6 1122 459 339 169 24 chr4 70426735 70427031 -85203089 - MER74A LTR ERVL -208 350 12 6 1122 360 43 0 0 chr4 70429088 70429134 -85200986 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1122 246 390 29 0 chr4 70429526 70429631 -85200489 - PB1D7 SINE Alu -12 108 1 6 1122 454 206 21 11 chr4 70430451 70430544 -85199576 + B3A SINE B2 1 94 -104 6 1122 262 301 105 31 chr4 70430809 70431215 -85198905 - L1MC LINE L1 -2913 3233 2777 6 1122 24 53 0 0 chr4 70431285 70431323 -85198797 + AT_rich Low_complexity Low_complexity 1 38 0 6 1122 337 301 29 93 chr4 70431396 70431568 -85198552 - LTR52 LTR ERVL -238 183 23 6 1122 383 365 67 40 chr4 70432017 70432240 -85197880 - MLT1A LTR MaLR 0 374 146 6 1122 277 359 46 46 chr4 70432298 70432473 -85197647 + MTEb LTR MaLR 116 290 -89 6 1122 639 121 0 41 chr4 70432901 70433022 -85197098 + Lx LINE L1 6539 6654 0 6 1122 275 179 60 0 chr4 70433120 70433187 -85196933 - L1MB8 LINE L1 0 6178 6108 6 1122 2794 197 48 54 chr4 70433403 70433639 -85196481 + RMER17D2 LTR ERVK 26 262 -547 6 1122 3955 47 8 0 chr4 70433639 70434129 -85195991 + L1Md_F2 LINE L1 6087 6580 -2 6 1122 2794 197 48 54 chr4 70434129 70434666 -85195454 + RMER17D2 LTR ERVK 263 794 -15 6 1122 483 354 186 4 chr4 70434697 70434944 -85195176 - Tigger7 DNA MER2_type -2180 311 20 6 1122 350 83 0 0 chr4 70435148 70435208 -85194912 - L1_Mus4 LINE L1 -3 6633 6574 6 1122 203 182 0 0 chr4 70436694 70436727 -85193393 + polypyrimidine Low_complexity Low_complexity 2 34 0 6 1122 21 0 0 0 chr4 70438595 70438616 -85191504 + AT_rich Low_complexity Low_complexity 1 21 0 6 1122 493 321 81 30 chr4 70438835 70439207 -85190913 + L1M2 LINE L1 4581 4971 -1172 6 1122 10485 21 0 0 chr4 70439506 70441401 -85188719 - L1Md_A LINE L1 0 6582 4688 6 1122 188 261 43 0 chr4 70441741 70441787 -85188333 + L2c LINE L2 3112 3159 -228 6 1122 231 266 12 12 chr4 70442320 70442400 -85187720 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1122 351 0 0 0 chr4 70442415 70442454 -85187666 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1122 321 336 65 39 chr4 70442475 70442630 -85187490 - L2 LINE L2 -583 2836 2678 6 1122 324 0 0 0 chr4 70442641 70442677 -85187443 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1122 345 24 0 0 chr4 70442677 70442718 -85187402 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1122 431 216 9 0 chr4 70443431 70443542 -85186578 + CT-rich Low_complexity Low_complexity 3 114 0 6 1122 766 335 66 86 chr4 70443998 70444592 -85185528 - RLTR18 LTR ERVK -2 614 33 6 1122 349 302 28 19 chr4 70445302 70445339 -85184781 - RSINE1 SINE B4 -53 112 74 6 1122 198 0 0 0 chr4 70445339 70445361 -85184759 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1122 349 302 28 19 chr4 70445361 70445431 -85184689 - RSINE1 SINE B4 -92 73 4 6 1122 181 405 65 0 chr4 70445651 70445804 -85184316 + L3 LINE CR1 3965 4127 -362 6 1122 1096 306 97 27 chr4 70446319 70446762 -85183358 - MER21B LTR ERV1 -292 571 98 6 1122 581 311 72 0 chr4 70446852 70447032 -85183088 + B3A SINE B2 2 194 -4 6 1122 498 75 0 0 chr4 70447120 70447187 -85182933 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1122 302 194 14 0 chr4 70447466 70447538 -85182582 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 6 1122 1960 219 50 0 chr4 70448017 70448418 -85181702 - MTC LTR MaLR 0 421 1 6 1122 566 256 249 28 chr4 70449163 70449561 -85180559 - RMER5 LTR ERV1 -16 518 33 6 1122 2084 163 43 30 chr4 70449718 70450116 -85180004 - MTB_Mm LTR MaLR 0 407 5 6 1122 279 305 94 0 chr4 70450606 70450734 -85179386 - L1M3a LINE L1 -5787 168 29 6 1122 235 354 12 0 chr4 70451057 70451139 -85178981 + MER58B DNA MER1_type 182 264 -77 6 1122 631 365 43 46 chr4 70451155 70451503 -85178617 + MER74A LTR ERVL 14 360 -198 6 1122 1100 95 0 0 chr4 70451512 70451659 -85178461 + B1_Mm SINE Alu 1 147 0 6 1122 544 294 113 12 chr4 70453167 70453494 -85176626 - Lx8 LINE L1 -30 7443 7084 6 1122 3970 85 43 2 chr4 70453552 70454108 -85176012 + L1_Mus4 LINE L1 6053 6631 -5 6 1122 3533 65 2 9 chr4 70454192 70454657 -85175463 + L1Md_F2 LINE L1 6121 6582 0 6 1122 451 303 18 18 chr4 70454667 70454778 -85175342 - B3 SINE B2 -10 206 96 6 1122 2000 213 25 174 chr4 70455291 70455777 -85174343 - L1_Mur3 LINE L1 -1044 4836 4358 6 1122 3303 64 0 58 chr4 70455777 70456243 -85173877 - L1_Mus2 LINE L1 0 6566 6128 6 1122 2000 213 25 174 chr4 70456243 70456370 -85173750 - L1_Mur3 LINE L1 -1523 4357 4317 6 1122 535 39 26 0 chr4 70456370 70456448 -85173672 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 6 1122 2000 213 25 174 chr4 70456448 70456812 -85173308 - L1_Mur3 LINE L1 -1564 4316 4003 6 1122 703 155 192 0 chr4 70456814 70456975 -85173145 + URR1B DNA MER1_type 33 224 -1 6 1122 1563 166 8 37 chr4 70457004 70457355 -85172765 - L1_Mur3 LINE L1 -1948 3932 3592 6 1122 281 26 26 0 chr4 70458603 70458641 -85171479 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1122 642 26 0 0 chr4 70460210 70460286 -85169834 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1122 25 90 0 0 chr4 70461201 70461268 -85168852 + AT_rich Low_complexity Low_complexity 1 67 0 6 1122 9320 139 5 8 chr4 70461642 70464074 -85166046 + Lx LINE L1 4233 6654 0 6 1122 531 0 0 0 chr4 70466315 70466374 -85163746 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1122 2437 40 33 0 chr4 70466745 70467046 -85163074 - ORR1A1 LTR MaLR 0 346 36 6 1122 3105 112 19 2 chr4 70467858 70468322 -85161798 - Lx2 LINE L1 -4 6993 6522 6 1122 21 57 0 0 chr4 70468511 70468546 -85161574 + AT_rich Low_complexity Low_complexity 1 35 0 6 1122 369 352 85 36 chr4 70468599 70468764 -85161356 - B3A SINE B2 -21 177 5 6 1122 495 335 60 77 chr4 70468943 70469279 -85160841 - MTEa LTR MaLR -19 360 31 6 1122 561 68 0 0 chr4 70470821 70470895 -85159225 + (TAA)n Simple_repeat Simple_repeat 2 75 0 6 1122 234 315 54 9 chr4 70473256 70473368 -85156752 + L3 LINE CR1 3854 3970 -519 6 1122 1562 253 145 24 chr4 70473512 70474003 -85156117 - RLTR20D LTR ERVK -6 562 13 7 1122 1659 156 31 137 chr4 70474006 70474421 -85155699 - RMER19B LTR ERVK -531 371 1 7 1122 186 43 0 0 chr4 70474601 70474624 -85155496 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 7 1122 3349 79 6 8 chr4 70474630 70475100 -85155020 - L1Md_F2 LINE L1 -5 6577 6109 7 1122 1771 106 8 0 chr4 70475115 70475370 -85154750 - IAPEY2_LTR LTR ERVK -69 288 32 7 1122 8471 110 7 18 chr4 70475380 70476737 -85153383 - IAPEy-int LTR ERVK 0 7513 6171 7 1122 6816 134 36 9 chr4 70476718 70477898 -85152222 - IAPEY3-int LTR ERVK -6469 1211 1 7 1122 2094 107 89 0 chr4 70477900 70478226 -85151894 - IAPEY2_LTR LTR ERVK -2 355 1 7 1122 32093 80 2 6 chr4 70478226 70483184 -85146936 - L1Md_F2 LINE L1 -468 6114 1180 7 1122 850 169 20 60 chr4 70483189 70483390 -85146730 - L1Md_F2 LINE L1 -5984 632 440 7 1122 22 0 0 0 chr4 70483595 70483617 -85146503 + AT_rich Low_complexity Low_complexity 1 22 0 7 1122 457 224 0 0 chr4 70483712 70483797 -85146323 + Lx5 LINE L1 6208 6292 -758 7 1122 1370 282 20 0 chr4 70483808 70484163 -85145957 + Lx5 LINE L1 6534 6895 -155 7 1122 423 0 0 0 chr4 70484166 70484213 -85145907 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1122 233 271 45 36 chr4 70484969 70485080 -85145040 - L1M5 LINE L1 -1290 4856 4745 7 1122 4682 133 26 12 chr4 70485102 70485871 -85144249 - Lx3C LINE L1 -7 6969 6190 7 1122 967 164 0 0 chr4 70485871 70486036 -85144084 + L1_Mur1 LINE L1 5448 5612 -274 7 1122 462 280 127 14 chr4 70486096 70486317 -85143803 - Lx8 LINE L1 -39 7434 7189 7 1122 324 137 260 0 chr4 70486326 70486399 -85143721 + MTC LTR MaLR 313 404 -17 7 1122 3526 104 44 15 chr4 70486407 70486952 -85143168 + L1_Mus3 LINE L1 6074 6634 -4 7 1122 242 287 8 62 chr4 70487211 70487341 -85142779 + L1MC3 LINE L1 7358 7480 -305 7 1122 475 367 15 65 chr4 70487367 70487568 -85142552 + ID_B1 SINE B4 2 192 -32 7 1122 431 304 17 62 chr4 70487591 70487645 -85142475 + L1MC3 LINE L1 7499 7551 -234 7 1122 2306 209 73 19 chr4 70487645 70488180 -85141940 - RLTR12A LTR ERVK -4 564 1 7 1122 431 304 17 62 chr4 70488180 70488304 -85141816 + L1MC3 LINE L1 7552 7669 -116 7 1122 213 121 0 0 chr4 70488304 70488337 -85141783 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1122 236 263 0 57 chr4 70488890 70488995 -85141125 - Lx8 LINE L1 -1 7472 7374 7 1122 897 276 0 9 chr4 70489356 70489568 -85140552 - B3 SINE B2 -6 210 1 7 1122 387 0 0 0 chr4 70490846 70490889 -85139231 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1122 558 108 0 0 chr4 70491397 70491480 -85138640 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 7 1122 1163 144 9 32 chr4 70491587 70491803 -85138317 - L1_Mus3 LINE L1 -1 6637 6427 7 1122 242 258 34 0 chr4 70492483 70492572 -85137548 + L1_Mur3 LINE L1 3648 3739 -2141 7 1122 757 290 62 23 chr4 70492677 70493030 -85137090 + Lx7 LINE L1 6119 6485 -1211 7 1122 290 188 31 0 chr4 70493023 70493087 -85137033 + L1_Rod LINE L1 3862 3927 -1920 7 1122 2707 41 0 167 chr4 70493097 70493535 -85136585 + RLTR10B2 LTR ERVK 1 365 0 7 1122 656 54 11 0 chr4 70493535 70493627 -85136493 + MMERVK10C-int LTR ERVK 1 93 -7488 7 1122 255 241 0 18 chr4 70493627 70493682 -85136438 + RLTR27 LTR ERVK 222 275 -34 7 1122 346 24 0 0 chr4 70493682 70493723 -85136397 + MMERVK10C-int LTR ERVK 225 265 -7316 7 1122 372 111 73 18 chr4 70493831 70493941 -85136179 + GA-rich Low_complexity Low_complexity 4 119 0 7 1122 306 68 23 0 chr4 70493941 70493985 -85136135 + RLTR10-int LTR ERVK 93 137 -6405 7 1122 2653 62 0 0 chr4 70493988 70494327 -85135793 + RLTR10-int LTR ERVK 652 990 -997 7 1122 374 307 54 28 chr4 70494469 70494740 -85135380 + IAP-d-int LTR ERVK 822 1012 -5530 7 1122 1379 88 102 30 chr4 70494754 70494989 -85135131 + IAP-d-int LTR ERVK 5004 5255 -1287 7 1122 4045 142 13 3 chr4 70494993 70495672 -85134448 + IAPEY3-int LTR ERVK 6995 7680 0 7 1122 2904 47 0 67 chr4 70495672 70496063 -85134057 + RLTR10B2 LTR ERVK 1 365 0 7 1122 290 312 12 55 chr4 70496067 70496230 -85133890 + L1_Rod LINE L1 3938 4093 -1754 7 1122 473 326 34 27 chr4 70496389 70496537 -85133583 + RSINE1 SINE B4 11 159 -6 7 1122 2327 100 3 0 chr4 70496558 70496878 -85133242 + L1_Mus2 LINE L1 6245 6565 -1 7 1122 320 309 32 123 chr4 70496955 70497110 -85133010 + RSINE1 SINE B4 2 142 -23 7 1122 362 57 19 0 chr4 70497128 70497181 -85132939 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 7 1122 503 329 53 44 chr4 70497237 70497650 -85132470 + L1MA4A LINE L1 5448 5864 -439 7 1122 447 224 20 7 chr4 70499665 70499768 -85130352 + L2c LINE L2 3251 3349 -38 7 1122 672 140 0 34 chr4 70499877 70499995 -85130125 + MusHAL1 LINE L1 1418 1531 -1181 7 1122 4196 125 26 29 chr4 70500003 70501146 -85128974 + L1_Mus3 LINE L1 5411 6618 -20 1 1122 540 35 11 34 chr4 70501146 70501235 -85128885 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 1122 25 0 0 0 chr4 70501235 70501260 -85128860 + AT_rich Low_complexity Low_complexity 1 25 0 3 1122 362 203 0 0 chr4 70502156 70502220 -85127900 + B3A SINE B2 6 69 -129 4 1122 22 0 0 0 chr4 70502358 70502380 -85127740 + AT_rich Low_complexity Low_complexity 1 22 0 5 1122 34 55 0 0 chr4 70503126 70503181 -85126939 + AT_rich Low_complexity Low_complexity 1 55 0 6 1122 1745 238 62 7 chr4 70503191 70503739 -85126381 - Lx2B LINE L1 -58 7000 6326 7 1122 890 194 70 19 chr4 70503735 70503992 -85126128 - Lx2B LINE L1 -859 6199 5930 7 1122 369 167 0 0 chr4 70503994 70504060 -85126060 - L1_Mur2 LINE L1 -1437 4440 4375 8 1122 300 317 26 114 chr4 70504139 70504253 -85125867 + PB1D10 SINE Alu 1 104 -23 9 1122 2824 171 36 4 chr4 70504545 70505073 -85125047 - Lx LINE L1 -228 6426 5882 1 1122 327 122 0 0 chr4 70505067 70505116 -85125004 + Lx2 LINE L1 5841 5889 -1108 1 1122 183 250 0 40 chr4 70505940 70505990 -85124130 + L2 LINE L2 2902 2949 -470 1 1122 4267 19 0 0 chr4 70507529 70508053 -85122067 - L1Md_T LINE L1 -1830 4053 3530 1 1122 12589 22 0 0 chr4 70508052 70509587 -85120533 + L1Md_T LINE L1 4052 5586 -297 1 1122 8977 6 0 3 chr4 70509587 70510586 -85119534 + L1Md_T LINE L1 5587 6582 0 1 1122 728 282 129 21 chr4 70511875 70512215 -85117905 + MTEa LTR MaLR 3 379 0 1 1122 1082 43 7 0 chr4 70512954 70513094 -85117026 + (TCTCC)n Simple_repeat Simple_repeat 1 141 0 1 1122 702 150 0 0 chr4 70513119 70513239 -85116881 + (TCCC)n Simple_repeat Simple_repeat 4 123 0 1 1122 1203 64 0 0 chr4 70513241 70513398 -85116722 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 1 1122 259 314 80 62 chr4 70513431 70513655 -85116465 - MLT1D LTR MaLR -215 290 63 1 1122 21 0 0 0 chr4 70514630 70514651 -85115469 + AT_rich Low_complexity Low_complexity 1 21 0 1 1122 6426 115 9 17 chr4 70514652 70515657 -85114463 - Lx3A LINE L1 -5 6976 5980 2 1122 3189 147 35 19 chr4 70515843 70516417 -85113703 - Lx2 LINE L1 -267 6730 6148 2 1122 388 294 67 0 chr4 70516417 70516536 -85113584 - MTE-int LTR MaLR -106 1474 1348 2 140 1314 289 40 87 chr4 70516538 70517306 -85112814 - Lx6 LINE L1 -371 7089 6358 2 1123 228 35 0 0 chr4 70517361 70517390 -85112730 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 2 1123 3994 179 61 11 chr4 70517507 70518406 -85111714 + L1_Mur2 LINE L1 4491 5434 -443 2 1123 469 323 114 59 chr4 70518410 70518877 -85111243 + MLT1F LTR MaLR 72 521 -27 2 1123 3979 149 22 47 chr4 70519024 70519796 -85110324 - RMER6A LTR ERVK 0 756 4 2 1123 24 67 0 0 chr4 70519915 70519960 -85110160 + AT_rich Low_complexity Low_complexity 1 45 0 2 1123 21 0 0 0 chr4 70520070 70520091 -85110029 + AT_rich Low_complexity Low_complexity 1 21 0 2 1123 294 239 15 0 chr4 70520158 70520225 -85109895 - B4A SINE B4 -46 246 179 3 1123 31 44 0 0 chr4 70520379 70520424 -85109696 + AT_rich Low_complexity Low_complexity 1 45 0 3 1123 3349 123 7 31 chr4 70520511 70521088 -85109032 + Lx LINE L1 5735 6297 -357 3 1123 1354 114 5 0 chr4 70521086 70521296 -85108824 + Lx2 LINE L1 6775 6985 -12 3 1123 666 0 0 0 chr4 70521936 70522010 -85108110 + (TTTTC)n Simple_repeat Simple_repeat 2 75 0 3 1123 1307 62 11 0 chr4 70522010 70522186 -85107934 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 3 1123 245 256 0 23 chr4 70522332 70522420 -85107700 - MER3 DNA MER1_type -39 170 85 3 1123 1153 62 7 0 chr4 70522622 70522766 -85107354 - B1_Mus1 SINE Alu 0 148 4 3 1123 210 329 0 0 chr4 70522825 70522898 -85107222 + A-rich Low_complexity Low_complexity 1 73 0 3 1123 493 341 15 0 chr4 70522898 70523033 -85107087 + RSINE1 SINE B4 5 141 -24 3 1123 423 0 0 0 chr4 70523038 70523085 -85107035 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1123 411 21 0 0 chr4 70523085 70523132 -85106988 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1123 341 92 0 44 chr4 70523548 70523616 -85106504 - RMER1B Other Other -6 1060 996 4 1123 2725 275 62 17 chr4 70523625 70525267 -85104853 - RMER1A Other Other -166 864 1 4 1123 284 286 0 0 chr4 70526206 70526297 -85103823 - L1MB7 LINE L1 -30 6154 6064 4 1123 412 148 99 0 chr4 70526300 70526381 -85103739 - RLTR11A2 LTR ERVK -2 525 437 4 1123 38428 18 2 6 chr4 70526408 70532812 -85097308 - L1Md_A LINE L1 -1 6581 204 4 1123 2040 203 50 11 chr4 70532812 70533251 -85096869 - RLTR11A2 LTR ERVK -71 456 1 4 1123 281 226 53 21 chr4 70533327 70533422 -85096698 - L1MB7 LINE L1 -203 5981 5884 4 1123 517 313 71 35 chr4 70534365 70534997 -85095123 + L1M4 LINE L1 2262 2916 -3230 4 1123 25148 49 3 1 chr4 70535148 70539138 -85090982 - L1Md_F3 LINE L1 -16 6568 2568 4 1123 22 0 0 0 chr4 70539215 70539237 -85090883 + AT_rich Low_complexity Low_complexity 1 22 0 4 1123 498 293 120 40 chr4 70539285 70540017 -85090103 + L1M4 LINE L1 3071 3861 -2285 4 1123 300 284 51 0 chr4 70540082 70540258 -85089862 + L1M2 LINE L1 4382 4566 -1577 5 1123 4902 82 83 11 chr4 70540593 70541317 -85088803 - L1_Mus2 LINE L1 -1 6565 5790 5 1123 2983 92 5 0 chr4 70541317 70541741 -85088379 + L1_Mm LINE L1 5457 5882 -1 5 1123 274 273 72 12 chr4 70541979 70542089 -85088031 - L1M4 LINE L1 -1695 4451 4340 5 1123 414 57 0 0 chr4 70542089 70542142 -85087978 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1123 274 273 72 12 chr4 70542142 70542198 -85087922 - L1M4 LINE L1 -1807 4339 4276 5 1123 201 140 60 0 chr4 70542701 70542751 -85087369 + T-rich Low_complexity Low_complexity 3 55 0 5 1123 2665 67 11 25 chr4 70542965 70543333 -85086787 - L1Md_F2 LINE L1 -2 6580 6218 5 1123 528 68 0 0 chr4 70543638 70543711 -85086409 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1123 267 281 84 76 chr4 70545256 70545387 -85084733 + MT2B LTR ERVL 85 216 -385 5 1123 301 152 0 33 chr4 70545332 70545393 -85084727 + B1_Mus2 SINE Alu 1 59 -88 5 1123 282 189 69 59 chr4 70545437 70545538 -85084582 + RLTR25B LTR ERVK 397 498 -530 6 1123 734 95 0 28 chr4 70545482 70545577 -85084543 + B1_Mm SINE Alu 43 137 -10 6 1123 221 0 35 0 chr4 70545577 70545606 -85084514 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1123 734 95 0 28 chr4 70545606 70545618 -85084502 + B1_Mm SINE Alu 138 147 0 6 1123 207 69 0 0 chr4 70546778 70546807 -85083313 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1123 347 311 22 0 chr4 70546845 70546935 -85083185 + B4A SINE B4 2 93 -199 6 1123 408 40 0 0 chr4 70547114 70547164 -85082956 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1123 188 35 35 0 chr4 70547261 70547290 -85082830 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 1123 500 227 23 8 chr4 70547799 70547932 -85082188 + L1_Mur3 LINE L1 2962 3096 -2784 6 1123 1442 254 24 33 chr4 70548941 70549365 -85080755 + L1_Mur3 LINE L1 288 707 -7005 6 1123 1781 172 57 0 chr4 70549342 70549709 -85080411 - L1_Mur1 LINE L1 -673 5213 4826 6 1123 654 230 14 53 chr4 70549711 70549806 -85080314 + Lx7 LINE L1 7083 7176 -520 7 1123 2145 206 67 6 chr4 70549806 70550286 -85079834 - RLTR18B LTR ERVK -3 509 1 7 1123 654 230 14 53 chr4 70550286 70550397 -85079723 + Lx7 LINE L1 7177 7281 -415 7 1123 1027 188 40 68 chr4 70550566 70550862 -85079258 + Lx7 LINE L1 7407 7694 -2 7 1123 323 96 19 0 chr4 70551669 70551721 -85078399 + (CAA)n Simple_repeat Simple_repeat 1 53 0 7 1123 457 321 115 10 chr4 70553477 70553669 -85076451 - B3 SINE B2 0 216 5 7 1123 1913 38 0 13 chr4 70553938 70554176 -85075944 - L1Md_F2 LINE L1 0 6582 6348 7 1123 380 270 111 70 chr4 70554752 70555067 -85075053 - MER113 DNA MER1_type -107 414 87 7 1123 458 264 63 14 chr4 70555399 70555541 -85074579 + RMER15 LTR ERVL 422 570 -5 7 1123 285 281 55 69 chr4 70555714 70555859 -85074261 - MLT1J LTR MaLR -332 180 38 7 1123 922 47 0 0 chr4 70556709 70556837 -85073283 - L1Md_T LINE L1 -1 6581 6454 7 1123 33 56 0 0 chr4 70556948 70557002 -85073118 + AT_rich Low_complexity Low_complexity 1 54 0 7 1123 31518 45 2 3 chr4 70557965 70562595 -85067525 - L1Md_F2 LINE L1 -2 6580 1954 8 1123 2061 309 69 65 chr4 70562735 70563409 -85066711 + Lx8 LINE L1 6328 6994 -479 8 1123 594 0 0 0 chr4 70563409 70563475 -85066645 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1123 2061 309 69 65 chr4 70563475 70563941 -85066179 + Lx8 LINE L1 6995 7473 0 8 1123 198 303 53 0 chr4 70564521 70564597 -85065523 - MIR SINE MIR -105 157 78 8 1123 240 86 0 0 chr4 70564643 70564678 -85065442 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1123 964 207 56 5 chr4 70564906 70565120 -85065000 - URR1A DNA MER1_type 0 226 2 8 1123 434 48 0 0 chr4 70565950 70566013 -85064107 - L1_Mus3 LINE L1 -6 6632 6570 8 1123 289 263 42 10 chr4 70566262 70566358 -85063762 + Tigger5 DNA MER2_type 2300 2398 -8 8 1123 189 0 0 0 chr4 70566362 70566383 -85063737 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1123 235 294 44 0 chr4 70566385 70566453 -85063667 - Tigger5 DNA MER2_type -2323 83 13 8 1123 210 267 0 77 chr4 70567539 70567604 -85062516 - PB1D10 SINE Alu 0 117 58 9 1123 204 40 0 0 chr4 70568697 70568722 -85061398 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 9 1123 25 0 0 0 chr4 70568956 70568981 -85061139 + AT_rich Low_complexity Low_complexity 1 25 0 9 1123 2601 87 5 11 chr4 70569055 70569425 -85060695 + L1Md_F2 LINE L1 6213 6580 -2 9 1123 467 233 0 41 chr4 70569946 70570067 -85060053 + Lx7 LINE L1 7554 7669 -27 9 1123 432 0 0 0 chr4 70570424 70570472 -85059648 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1123 212 296 229 24 chr4 70570631 70570714 -85059406 - PB1D10 SINE Alu -17 100 1 9 1123 401 314 56 34 chr4 70570983 70571250 -85058870 + L1ME4a LINE L1 5571 5843 -281 9 1123 22 56 0 0 chr4 70571510 70571546 -85058574 + AT_rich Low_complexity Low_complexity 1 36 0 9 1123 266 331 46 33 chr4 70571823 70571976 -85058144 - Lx8 LINE L1 -379 7094 6940 9 1123 1127 282 13 3 chr4 70572002 70572301 -85057819 - Lx8 LINE L1 -609 6864 6563 9 1123 748 261 89 13 chr4 70572353 70572578 -85057542 - Lx8 LINE L1 -987 6486 6245 9 1123 490 306 58 6 chr4 70572608 70572779 -85057341 - MLT1A1 LTR MaLR 0 408 229 1 1123 422 155 45 18 chr4 70572838 70572950 -85057170 + L1Md_F3 LINE L1 6470 6584 0 1 1123 226 338 85 48 chr4 70573283 70573448 -85056672 + LTR88b LTR Gypsy? 268 438 -399 1 1123 537 301 128 35 chr4 70573890 70574179 -85055941 + Looper DNA PiggyBac 1176 1491 -67 1 1123 182 184 53 0 chr4 70575383 70575459 -85054661 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1123 1042 128 0 0 chr4 70576357 70576498 -85053622 + B1_Mus1 SINE Alu 1 141 -7 1 1123 261 57 0 0 chr4 70576498 70576533 -85053587 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1123 618 286 50 15 chr4 70576771 70576970 -85053150 + ID_B1 SINE B4 5 210 -14 1 1123 191 36 36 0 chr4 70576974 70577002 -85053118 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1123 235 286 21 32 chr4 70577191 70577285 -85052835 + L1M5 LINE L1 5683 5775 -389 1 1123 215 227 0 15 chr4 70578395 70578462 -85051658 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1123 289 309 45 117 chr4 70578654 70578808 -85051312 - RMER15 LTR ERVL -14 561 419 1 1123 270 380 20 27 chr4 70579223 70579369 -85050751 + L2a LINE L2 3086 3230 -196 1 1123 189 51 24 49 chr4 70579375 70579416 -85050704 + (TCTCCC)n Simple_repeat Simple_repeat 3 42 0 1 1123 450 0 0 0 chr4 70579434 70579484 -85050636 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1123 270 0 0 0 chr4 70579484 70579513 -85050607 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1123 441 0 0 0 chr4 70579513 70579561 -85050559 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1123 2579 141 40 11 chr4 70579608 70580054 -85050066 + Lx LINE L1 6189 6647 -7 1 1123 6760 44 4 4 chr4 70580050 70580890 -85049230 + L1Md_F2 LINE L1 5741 6580 -2 1 1123 594 0 0 0 chr4 70581808 70581874 -85048246 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1123 205 211 19 0 chr4 70581874 70581926 -85048194 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1 1123 313 183 72 20 chr4 70581915 70582109 -85048011 + (TCTA)n Simple_repeat Simple_repeat 1 203 0 1 1123 251 301 96 29 chr4 70583668 70583877 -85046243 + L1MA6 LINE L1 6051 6273 -27 1 1123 1065 284 52 26 chr4 70585554 70585861 -85044259 + Lx8 LINE L1 7084 7398 -75 1 1123 440 153 0 12 chr4 70585883 70585969 -85044151 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1123 294 376 57 0 chr4 70586341 70586482 -85043638 + Lx8 LINE L1 7194 7342 -131 1 1123 32 20 0 20 chr4 70586578 70586610 -85043510 + AT_rich Low_complexity Low_complexity 1 32 0 1 1123 708 157 295 0 chr4 70586610 70586776 -85043344 + B3 SINE B2 2 216 0 1 1123 32 20 0 20 chr4 70586776 70586793 -85043327 + AT_rich Low_complexity Low_complexity 1 17 0 1 1123 300 342 103 49 chr4 70587114 70587317 -85042803 - B4A SINE B4 -73 219 6 1 1123 21 0 0 0 chr4 70587549 70587570 -85042550 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 405 162 99 66 chr4 70587705 70587857 -85042263 - Lx3_Mus LINE L1 -1 7008 6852 1 1123 10069 113 51 90 chr4 70587864 70590519 -85039601 - Lx3_Mus LINE L1 -481 6528 3977 1 1123 4301 120 32 38 chr4 70590517 70591262 -85038858 + Lx3_Mus LINE L1 3240 3980 -1906 1 1123 1207 149 33 9 chr4 70591381 70591591 -85038529 - ORR1A2 LTR MaLR 0 327 113 1 1123 291 354 117 80 chr4 70591815 70592064 -85038056 - MER21B LTR ERV1 -89 774 517 1 1123 192 137 19 38 chr4 70592356 70592409 -85037711 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 1 1123 459 48 0 0 chr4 70592606 70592668 -85037452 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1123 507 306 63 11 chr4 70592729 70592904 -85037216 + LTR82A LTR ERVL 132 315 -557 1 1123 3975 206 89 20 chr4 70593116 70594021 -85036099 - Lx2B LINE L1 -9 6991 6024 1 1123 241 290 55 115 chr4 70594111 70594294 -85035826 + LTR82A LTR ERVL 679 850 -22 1 1123 247 357 0 0 chr4 70594583 70594639 -85035481 - ID_B1 SINE B4 -82 142 87 1 1123 609 14 0 0 chr4 70594766 70594836 -85035284 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1123 3593 91 13 19 chr4 70594905 70595440 -85034680 - Lx3_Mus LINE L1 -520 6489 5958 1 1123 3492 90 33 0 chr4 70595440 70595931 -85034189 + Lx3_Mus LINE L1 6503 7009 0 1 1123 582 341 38 24 chr4 70596145 70596355 -85033765 + B3 SINE B2 1 213 -3 1 1123 1118 259 19 90 chr4 70596638 70597066 -85033054 + Lx7 LINE L1 5507 5898 -1562 1 1123 3802 233 57 34 chr4 70597616 70597709 -85032411 + Lx7 LINE L1 6087 6174 -1522 1 1123 213 39 0 0 chr4 70597709 70597735 -85032385 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1123 3802 233 57 34 chr4 70597735 70598644 -85031476 + Lx7 LINE L1 6175 7111 -585 1 1123 249 248 135 29 chr4 70598823 70598844 -85031276 + Lx7 LINE L1 7563 7587 -109 1 1123 681 53 0 0 chr4 70598844 70598938 -85031182 + (GA)n Simple_repeat Simple_repeat 2 95 0 1 1123 249 248 135 29 chr4 70598938 70599020 -85031100 + Lx7 LINE L1 7588 7677 -19 1 1123 5588 71 20 0 chr4 70599673 70600031 -85030089 - L1_Mm LINE L1 -275 5608 5251 1 1123 324 0 0 0 chr4 70600031 70600067 -85030053 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1123 5588 71 20 0 chr4 70600067 70600445 -85029675 - L1_Mm LINE L1 -633 5250 4858 1 1123 3112 75 67 7 chr4 70600448 70600894 -85029226 + L1Md_F2 LINE L1 6098 6570 -12 1 1123 315 282 180 52 chr4 70603892 70604064 -85026056 + MLT2C1 LTR ERVL 58 251 -163 1 1123 432 0 0 0 chr4 70604477 70604525 -85025595 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1123 369 0 0 0 chr4 70604525 70604565 -85025555 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1123 201 129 0 0 chr4 70604730 70604761 -85025359 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1123 959 207 32 18 chr4 70604837 70605058 -85025062 - URR1A DNA MER1_type -2 224 1 1 1123 597 14 0 0 chr4 70605440 70605510 -85024610 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1123 516 207 99 0 chr4 70606326 70606437 -85023683 + Lx4B LINE L1 6082 6203 -855 1 1123 1214 234 260 5 chr4 70606438 70606834 -85023286 + Lx2B LINE L1 6504 7000 0 1 1123 26606 114 30 14 chr4 70606854 70608462 -85021658 + L1Md_F LINE L1 346 1972 -3911 1 1123 219 36 0 0 chr4 70608462 70608490 -85021630 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1123 26606 82 2 6 chr4 70608490 70611436 -85018684 + L1Md_F LINE L1 1973 4915 -968 1 1123 3633 122 5 5 chr4 70611436 70612012 -85018108 + L1Md_F2 LINE L1 6005 6580 -2 1 1123 853 9 9 9 chr4 70612310 70612417 -85017703 + (TTC)n Simple_repeat Simple_repeat 2 108 0 1 1123 737 303 92 56 chr4 70613106 70613463 -85016657 + ORR1D2 LTR MaLR 1 370 0 1 1123 3353 36 3 0 chr4 70614363 70614755 -85015365 + MTA_Mm LTR MaLR 3 395 -1 1 1123 207 0 0 0 chr4 70615137 70615160 -85014960 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1123 291 301 30 67 chr4 70615163 70615327 -85014793 - Lx6 LINE L1 -15 7445 7288 1 1123 368 241 12 0 chr4 70615777 70615860 -85014260 + ORR1C1 LTR MaLR 1 84 -294 1 1123 6568 79 9 0 chr4 70615860 70616770 -85013350 + L1_Mus1 LINE L1 5650 6567 0 1 1123 384 266 9 9 chr4 70617078 70617188 -85012932 - Lx6 LINE L1 -218 7242 7133 1 1123 546 43 0 0 chr4 70617197 70617266 -85012854 + (TATG)n Simple_repeat Simple_repeat 4 72 0 1 1123 638 278 83 26 chr4 70617279 70617545 -85012575 - B4A SINE B4 -10 282 2 1 1123 3136 190 140 6 chr4 70617694 70618344 -85011776 - RMER19A LTR ERVK 0 737 1 1 1123 471 314 37 43 chr4 70619064 70619227 -85010893 + RSINE1 SINE B4 4 165 0 1 1123 1185 226 11 0 chr4 70619380 70619663 -85010457 + Lx5 LINE L1 5748 6033 -1017 1 1123 1660 183 37 52 chr4 70619663 70619783 -85010337 + RMER17C LTR ERVK 1 128 -282 1 1123 210 37 0 0 chr4 70619783 70619810 -85010310 + (TTCCC)n Simple_repeat Simple_repeat 4 30 0 1 1123 1215 67 0 0 chr4 70619816 70619995 -85010125 + (CCTTG)n Simple_repeat Simple_repeat 2 180 0 1 1123 1660 183 37 52 chr4 70619995 70620018 -85010102 + RMER17C LTR ERVK 135 159 -251 1 1123 1203 72 0 0 chr4 70620018 70620198 -85009922 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1123 1660 183 37 52 chr4 70620198 70620454 -85009666 + RMER17C LTR ERVK 160 401 -9 1 1123 421 253 60 0 chr4 70620461 70620616 -85009504 + Lx5 LINE L1 6029 6201 -849 1 1123 1346 311 46 0 chr4 70620615 70621010 -85009110 + Lx5 LINE L1 6454 6866 -184 1 1123 234 0 0 0 chr4 70621222 70621248 -85008872 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1123 22 70 0 0 chr4 70621270 70621313 -85008807 + AT_rich Low_complexity Low_complexity 1 43 0 1 1123 27 0 0 0 chr4 70621417 70621444 -85008676 + AT_rich Low_complexity Low_complexity 1 27 0 1 1123 1739 266 79 37 chr4 70621729 70622475 -85007645 + RCHARR1 DNA MER1_type 17 973 -1 1 1123 414 0 0 0 chr4 70622527 70622573 -85007547 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1123 30 59 0 0 chr4 70622685 70622736 -85007384 + AT_rich Low_complexity Low_complexity 1 51 0 1 1123 270 56 0 0 chr4 70623436 70623472 -85006648 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 1 1123 399 21 0 0 chr4 70623496 70623544 -85006576 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1123 189 0 0 0 chr4 70624043 70624064 -85006056 + (ATG)n Simple_repeat Simple_repeat 1 21 0 1 1123 183 80 0 0 chr4 70624064 70624089 -85006031 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1 1123 1017 89 0 37 chr4 70624089 70624276 -85005844 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1123 203 161 23 69 chr4 70624805 70624892 -85005228 + (TAA)n Simple_repeat Simple_repeat 2 84 0 1 1123 282 347 0 0 chr4 70625155 70625250 -85004870 + ID_B1 SINE B4 127 221 -3 1 1123 180 0 0 0 chr4 70625584 70625604 -85004516 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1123 595 341 50 32 chr4 70626509 70626788 -85003332 - RMER15 LTR ERVL -17 558 275 1 1123 2626 229 55 37 chr4 70626838 70627559 -85002561 - Lx7 LINE L1 -602 7094 6361 1 1123 1343 196 107 6 chr4 70627874 70628229 -85001891 + MYSERV16_I-int LTR ERVK 1514 1904 -422 1 1123 4721 125 49 9 chr4 70628229 70629126 -85000994 - Lx3B LINE L1 -519 6454 5532 1 1123 2791 88 32 5 chr4 70629126 70629536 -85000584 - BGLII LTR ERVK 0 421 1 1 1123 1196 194 94 8 chr4 70629537 70629931 -85000189 - MYSERV16_I-int LTR ERVK 0 2326 1899 1 1123 1044 153 60 60 chr4 70629938 70630203 -84999917 - RMER3D-int LTR ERVK -653 2189 1925 1 1123 629 149 48 34 chr4 70630222 70630368 -84999752 - RMER3D-int LTR ERVK -1163 1679 1532 1 1123 1583 36 0 35 chr4 70630387 70630587 -84999533 + B2_Mm1a SINE B2 1 193 0 1 1123 1213 55 0 0 chr4 70630601 70630747 -84999373 + B1_Mm SINE Alu 2 147 0 1 1123 249 33 0 0 chr4 70630747 70630777 -84999343 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1123 1696 183 113 25 chr4 70630803 70631281 -84998839 - RMER3D-int LTR ERVK -1309 1533 1014 1 1123 285 71 66 77 chr4 70631326 70631417 -84998703 + CT-rich Low_complexity Low_complexity 1 90 0 1 1123 251 312 50 0 chr4 70631423 70631503 -84998617 + C-rich Low_complexity Low_complexity 1 84 0 1 1123 1118 34 11 49 chr4 70631503 70631688 -84998432 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 2 1123 582 85 0 28 chr4 70631688 70631797 -84998323 - L1Md_F3 LINE L1 0 6584 6479 2 1123 471 101 0 0 chr4 70631797 70631866 -84998254 - RMER3D-int LTR ERVK -2285 557 489 1 1123 8669 125 8 2 chr4 70632148 70634381 -84995739 + L1_Mus3 LINE L1 4388 6631 -7 2 1123 7224 142 16 70 chr4 70634380 70636408 -84993712 - L1VL4 LINE L1 -1501 2058 156 2 1123 4884 137 31 31 chr4 70636469 70637462 -84992658 - Lx3B LINE L1 -767 5119 4127 1 1123 9101 120 20 24 chr4 70637438 70639068 -84991052 - MusHAL1 LINE L1 -965 1747 125 2 1123 242 358 50 48 chr4 70639636 70639867 -84990253 + L2a LINE L2 3168 3385 -2 2 1123 312 353 130 41 chr4 70640004 70640320 -84989800 + MER2 DNA MER2_type 1 344 -1 2 1123 1533 107 0 0 chr4 70640372 70640597 -84989523 - L1Md_F2 LINE L1 -344 6238 6014 2 1123 26 0 0 0 chr4 70640810 70640836 -84989284 + AT_rich Low_complexity Low_complexity 1 26 0 2 1123 8795 74 2 1 chr4 70640847 70642781 -84987339 - L1Md_F2 LINE L1 0 6582 4647 2 1123 216 254 0 35 chr4 70643796 70643853 -84986267 + L3b LINE CR1 175 229 -253 2 1123 361 297 68 31 chr4 70644538 70644701 -84985419 + B3 SINE B2 48 216 0 2 1123 3253 184 62 7 chr4 70645269 70645976 -84984144 - Lx4B LINE L1 -5 7053 6308 2 1123 1155 276 27 48 chr4 70646137 70646620 -84983500 + Lx9 LINE L1 7001 7473 -171 2 1123 231 36 0 0 chr4 70646796 70646824 -84983296 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1123 443 279 88 107 chr4 70647012 70647273 -84982847 + RMER2 LTR ERV1 308 563 -4 2 1124 4149 93 7 7 chr4 70647979 70648571 -84981549 - L1Md_F2 LINE L1 -10 6572 5981 2 1124 1360 74 0 0 chr4 70648571 70648760 -84981360 + L1_Mm LINE L1 5097 5285 -598 2 1124 3273 41 5 5 chr4 70648760 70649156 -84980964 + MTA_Mm LTR MaLR 1 396 0 2 1124 825 121 0 0 chr4 70649191 70649315 -84980805 - B1_Mm SINE Alu -1 146 23 2 1124 25 31 0 0 chr4 70649323 70649355 -84980765 + AT_rich Low_complexity Low_complexity 1 32 0 2 1124 420 318 80 32 chr4 70649958 70650516 -84979604 + RLTR4_MM-int LTR ERV1 1173 1742 -3321 2 1124 442 353 36 28 chr4 70650650 70651039 -84979081 + RLTR4_MM-int LTR ERV1 1812 2371 -5230 2 1124 1034 139 6 28 chr4 70651286 70651464 -84978656 - RLTR9A LTR ERVK 0 368 195 2 1124 447 105 104 13 chr4 70651431 70651508 -84978612 - RLTR9A LTR ERVK -284 84 1 2 1124 778 327 12 3 chr4 70651572 70651903 -84978217 + RLTR4_MM-int LTR ERV1 2695 3028 -4578 2 1124 6654 70 9 0 chr4 70651949 70652869 -84977251 + L1_Mm LINE L1 4615 5542 -341 2 1124 1958 84 0 11 chr4 70652869 70653144 -84976976 + L1Md_F2 LINE L1 6298 6569 -13 2 1124 1105 44 0 0 chr4 70653150 70653285 -84976835 + L1Md_F2 LINE L1 5452 5586 -297 2 1124 7881 57 1 0 chr4 70653285 70654267 -84975853 + L1Md_F2 LINE L1 5587 6569 -13 2 1124 1097 348 64 34 chr4 70654305 70656374 -84973746 + RLTR4_MM-int LTR ERV1 2202 5109 -2447 2 1124 21 0 0 0 chr4 70656663 70656684 -84973436 + AT_rich Low_complexity Low_complexity 1 21 0 2 1124 2060 125 12 33 chr4 70656781 70657111 -84973009 + ORR1A2 LTR MaLR 5 327 0 2 1124 363 96 0 0 chr4 70657850 70657902 -84972218 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1124 527 365 45 10 chr4 70657934 70658136 -84971984 - B4A SINE B4 0 292 84 2 1124 1152 122 28 0 chr4 70658150 70658331 -84971789 - B2_Mm2 SINE B2 -9 186 1 2 1124 571 302 18 23 chr4 70658346 70658563 -84971557 - B3 SINE B2 0 216 1 2 1124 30 27 0 0 chr4 70658864 70658901 -84971219 + AT_rich Low_complexity Low_complexity 1 37 0 2 1124 23 0 0 0 chr4 70659373 70659396 -84970724 + AT_rich Low_complexity Low_complexity 1 23 0 2 1124 198 353 127 16 chr4 70659685 70659993 -84970127 + L2a LINE L2 1433 1774 -1645 2 1124 816 287 74 35 chr4 70660025 70660336 -84969784 + Lx8 LINE L1 6341 6663 -810 2 1124 817 110 16 5 chr4 70660338 70660483 -84969637 + MTB LTR MaLR 1 143 -278 2 1124 7745 26 0 0 chr4 70660483 70661447 -84968673 - L1Md_T LINE L1 -1532 4351 3388 2 1124 9581 34 0 0 chr4 70661442 70662643 -84967477 + L1Md_T LINE L1 4385 5585 -298 2 1124 8234 40 3 0 chr4 70662644 70663637 -84966483 + L1Md_T LINE L1 5587 6582 0 2 1124 1900 118 31 0 chr4 70663646 70663934 -84966186 + MTB LTR MaLR 104 400 0 2 1124 636 341 58 11 chr4 70663938 70664314 -84965806 + Lx8 LINE L1 6665 7058 -415 2 1124 485 349 60 10 chr4 70664348 70664646 -84965474 + Lx8 LINE L1 7132 7444 -29 2 1124 29309 82 4 3 chr4 70664852 70670059 -84960061 + L1Md_F2 LINE L1 387 5586 -297 2 1124 8132 43 2 4 chr4 70670060 70671057 -84959063 + L1Md_F2 LINE L1 5588 6582 0 2 1124 410 374 77 78 chr4 70671090 70671755 -84958365 - MER21B LTR ERV1 -139 724 61 2 1124 448 325 33 19 chr4 70671880 70672093 -84958027 + L2a LINE L2 2275 2490 -929 2 1124 233 351 45 26 chr4 70672178 70672333 -84957787 + L2a LINE L2 2733 2890 -529 2 1124 351 0 0 0 chr4 70672341 70672380 -84957740 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1124 1537 316 20 62 chr4 70672440 70673243 -84956877 + Lx9 LINE L1 6692 7460 -184 2 1124 214 174 0 0 chr4 70673418 70673464 -84956656 + A-rich Low_complexity Low_complexity 3 48 0 2 1124 206 336 73 46 chr4 70673511 70673770 -84956350 + L2a LINE L2 3109 3374 -52 2 1124 1263 263 38 3 chr4 70673815 70674128 -84955992 - ORR1D1 LTR MaLR -50 324 1 2 1124 2356 105 37 3 chr4 70674515 70674896 -84955224 - L1_Mus3 LINE L1 -19 6619 6226 2 1124 195 42 0 0 chr4 70674946 70674970 -84955150 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1124 3864 140 9 2 chr4 70674978 70675623 -84954497 + L1_Mm LINE L1 4082 4731 -1152 2 1124 1600 103 0 47 chr4 70675663 70675918 -84954202 - L1Md_F2 LINE L1 -13 6569 6327 2 1124 462 123 0 0 chr4 70675918 70675983 -84954137 + L1Md_F3 LINE L1 6051 6115 -469 2 1124 272 345 49 22 chr4 70675961 70676228 -84953892 + L1MCa LINE L1 897 1170 -5338 2 1124 2052 127 24 3 chr4 70678212 70678543 -84951577 - L1_Mus4 LINE L1 -2 6634 6297 2 1124 410 29 59 0 chr4 70678550 70678618 -84951502 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 2 1124 10877 121 14 2 chr4 70680388 70682113 -84948007 - L1_Mur1 LINE L1 -477 5409 3664 2 1124 419 234 108 42 chr4 70682129 70682529 -84947591 + L1_Mur1 LINE L1 462 871 -6111 2 1124 1912 187 0 0 chr4 70682555 70682908 -84947212 - L1_Mur1 LINE L1 -5907 1075 723 2 1124 986 97 0 12 chr4 70682936 70683103 -84947017 + (GAAA)n Simple_repeat Simple_repeat 2 166 0 2 1124 549 348 65 13 chr4 70683130 70683360 -84946760 + B4A SINE B4 41 282 -10 2 1124 807 283 67 54 chr4 70683384 70683878 -84946242 - RMER2 LTR ERV1 -27 540 2 2 1124 468 0 0 0 chr4 70683891 70683943 -84946177 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1124 408 71 0 0 chr4 70683943 70683999 -84946121 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 2 1124 5728 181 32 31 chr4 70684268 70684983 -84945137 - L1_Mur3 LINE L1 -1189 4691 3992 2 1124 6038 151 45 32 chr4 70684983 70686082 -84944038 + RLTR13D3 LTR ERVK 1 1114 0 2 1124 5728 181 32 31 chr4 70686082 70686648 -84943472 - L1_Mur3 LINE L1 -1889 3991 3409 2 1124 4796 235 86 70 chr4 70686691 70687021 -84943099 + Lx2A LINE L1 3795 4133 -1750 2 1124 585 42 0 0 chr4 70687021 70687093 -84943027 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 1124 7776 194 61 42 chr4 70687093 70689885 -84940235 + Lx2A LINE L1 4134 6976 -32 2 1124 419 63 0 112 chr4 70689886 70689975 -84940145 + Lx2A LINE L1 6930 7008 0 2 1124 549 213 92 23 chr4 70691024 70691154 -84938966 - ORR1D1 LTR MaLR 0 374 236 2 1124 330 320 8 0 chr4 70691237 70691359 -84938761 - L1M3 LINE L1 -557 5614 5492 2 1124 290 302 94 0 chr4 70691552 70691658 -84938462 - ORR1D1 LTR MaLR -263 116 1 2 1124 1714 310 74 19 chr4 70691665 70692240 -84937880 - ORR1D1-int LTR MaLR -7 1573 967 2 1124 1251 258 151 44 chr4 70692240 70692407 -84937713 + MTC-int LTR MaLR 1 181 -1077 2 1124 1111 76 133 12 chr4 70692407 70692560 -84937560 + B2_Mm2 SINE B2 2 177 -18 2 1124 216 0 0 0 chr4 70692560 70692584 -84937536 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1124 1111 76 133 12 chr4 70692584 70692603 -84937517 + B2_Mm2 SINE B2 178 195 0 2 1124 1251 258 151 44 chr4 70692603 70692893 -84937227 + MTC-int LTR MaLR 182 507 -751 2 1124 526 196 10 10 chr4 70692889 70692992 -84937128 + MTD LTR MaLR 314 416 -3 2 1124 863 274 166 22 chr4 70692992 70693306 -84936814 - ORR1D1-int LTR MaLR -679 901 543 2 1124 705 321 108 32 chr4 70693314 70693564 -84936556 - ORR1D1-int LTR MaLR -1179 401 127 2 1124 2913 91 5 2 chr4 70693564 70693982 -84936138 - BGLII LTR ERVK -2 419 1 2 1124 705 321 108 32 chr4 70693982 70694046 -84936074 - ORR1D1-int LTR MaLR -1454 126 63 2 1124 679 282 74 146 chr4 70694049 70694122 -84935998 + MTE2b LTR MaLR 3 82 -297 2 1124 1979 201 16 0 chr4 70694122 70694510 -84935610 + ORR1B1 LTR MaLR 1 394 0 2 1124 679 282 74 146 chr4 70694510 70694692 -84935428 + MTE2b LTR MaLR 83 231 -148 2 1124 261 57 0 0 chr4 70694692 70694727 -84935393 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1124 679 282 74 146 chr4 70694727 70694848 -84935272 + MTE2b LTR MaLR 232 353 -26 2 1124 799 244 30 57 chr4 70694951 70695164 -84934956 - L1M2 LINE L1 -1528 4615 4394 2 1124 1602 47 0 0 chr4 70695164 70695357 -84934763 - B2_Mm1t SINE B2 0 193 1 2 1124 799 244 30 57 chr4 70695357 70695477 -84934643 - L1M2 LINE L1 -1750 4393 4291 2 1124 24 32 0 0 chr4 70695498 70695529 -84934591 + AT_rich Low_complexity Low_complexity 1 31 0 2 1124 1623 191 44 132 chr4 70695699 70696132 -84933988 + RLTR25B LTR ERVK 1 395 -633 2 1124 377 312 46 21 chr4 70696395 70696680 -84933440 - L1M2 LINE L1 -2889 3254 2963 2 1124 1565 197 39 0 chr4 70696693 70696977 -84933143 + RLTR25A LTR ERVK 5 299 -804 2 1124 576 257 82 114 chr4 70697174 70697429 -84932691 - MT2B LTR ERVL -2 599 353 2 1124 1029 201 26 0 chr4 70697497 70697686 -84932434 - ORR1C2 LTR MaLR -190 194 1 2 1124 3455 87 11 2 chr4 70697717 70698267 -84931853 - L1Md_F2 LINE L1 0 6582 6085 2 1124 2671 108 15 5 chr4 70698267 70698677 -84931443 - BGLII LTR ERVK -7 414 1 2 1124 285 240 213 16 chr4 70698692 70698819 -84931301 - L1_Mur3 LINE L1 -3421 2459 2308 2 1124 227 288 49 12 chr4 70698953 70699034 -84931086 + L1M2 LINE L1 2224 2307 -3836 2 1124 5951 81 21 0 chr4 70699062 70699924 -84930196 - L1_Mur1 LINE L1 -3426 2460 1581 2 1124 5908 41 0 0 chr4 70699924 70700637 -84929483 - L1Md_T LINE L1 -1 6581 5869 2 1124 325 287 11 208 chr4 70700638 70700902 -84929218 + ORR1D1 LTR MaLR 103 314 -60 2 1124 23 68 0 0 chr4 70700908 70700952 -84929168 + AT_rich Low_complexity Low_complexity 1 44 0 2 1124 27 0 0 0 chr4 70702928 70702955 -84927165 + AT_rich Low_complexity Low_complexity 1 27 0 2 1124 573 316 52 23 chr4 70704148 70704442 -84925678 + MTD LTR MaLR 6 279 -100 2 1124 471 202 0 0 chr4 70705425 70705539 -84924581 + (TG)n Simple_repeat Simple_repeat 1 114 0 2 1124 2868 234 106 22 chr4 70707964 70708650 -84921470 - Lx5 LINE L1 -3 7047 6304 2 1124 2202 107 34 3 chr4 70708650 70708978 -84921142 + ORR1A1 LTR MaLR 1 338 -8 2 1124 10674 80 17 8 chr4 70708982 70709543 -84920577 + ORR1A1-int LTR MaLR 1 570 -1222 2 1124 2961 60 5 33 chr4 70709543 70709942 -84920178 - RLTR10 LTR ERVK -2 388 1 2 1124 10674 80 17 8 chr4 70709942 70710908 -84919212 + ORR1A1-int LTR MaLR 571 1541 -251 2 1124 369 80 0 0 chr4 70710934 70710984 -84919136 + ORR1A1-int LTR MaLR 1914 1963 0 2 1124 2493 64 8 85 chr4 70710984 70711359 -84918761 + ORR1A1 LTR MaLR 1 346 0 2 1124 2687 200 41 31 chr4 70711359 70712106 -84918014 - Lx5 LINE L1 -742 6308 5535 2 1124 2715 190 112 14 chr4 70713496 70713805 -84916315 + L1_Mus1 LINE L1 5241 5550 -336 2 1124 1516 53 0 0 chr4 70713805 70713995 -84916125 + L1Md_T LINE L1 6393 6582 0 2 1124 7355 64 17 0 chr4 70713995 70714948 -84915172 + L1_Mus1 LINE L1 5551 6567 0 2 1124 14905 194 57 66 chr4 70716280 70716810 -84913310 - L1_Mur3 LINE L1 -330 5547 5030 2 1124 1037 100 0 0 chr4 70716810 70716950 -84913170 + B1_Mus1 SINE Alu 3 142 -6 2 1124 14905 194 57 66 chr4 70716950 70720038 -84910082 - L1_Mur3 LINE L1 -848 5029 1974 2 1124 183 42 0 0 chr4 70720038 70720062 -84910058 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1124 14905 194 57 66 chr4 70720062 70720466 -84909654 - L1_Mur3 LINE L1 -3904 1973 1563 2 1124 7693 99 7 18 chr4 70720486 70721602 -84908518 - Lx3_Mus LINE L1 -56 6953 5850 3 1124 5489 111 25 0 chr4 70721601 70722415 -84907705 + Lx3_Mus LINE L1 4998 5831 -55 3 1124 1150 230 13 9 chr4 70722414 70722825 -84907295 - L1_Mur3 LINE L1 -4561 1316 904 2 1124 246 241 0 53 chr4 70723160 70723217 -84906903 - MER45B DNA Tip100 -10 1030 977 3 1124 211 244 0 0 chr4 70723402 70723447 -84906673 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1124 1836 310 52 42 chr4 70723604 70723892 -84906228 - Lx8 LINE L1 -325 7148 6849 3 1124 189 0 0 0 chr4 70723892 70723913 -84906207 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1124 1836 310 52 42 chr4 70723913 70724388 -84905732 - Lx8 LINE L1 -625 6848 6377 3 1124 264 270 0 0 chr4 70725852 70725915 -84904205 - MIRc SINE MIR -121 147 85 3 1124 513 286 17 64 chr4 70726381 70726553 -84903567 + ID_B1 SINE B4 60 223 -1 3 1124 784 187 0 28 chr4 70726412 70726555 -84903565 + B1_Mus1 SINE Alu 10 148 0 3 1124 294 104 0 49 chr4 70726555 70726636 -84903484 + A-rich Low_complexity Low_complexity 6 82 0 3 1124 238 320 13 136 chr4 70726653 70726881 -84903239 - MT2A LTR ERVL -277 256 57 3 1124 822 277 14 27 chr4 70726679 70726898 -84903222 - MTE2b LTR MaLR -120 259 44 3 1124 313 349 0 0 chr4 70726883 70726966 -84903154 - MTE2b LTR MaLR -294 85 3 3 1124 540 0 0 0 chr4 70727245 70727305 -84902815 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1124 634 268 229 8 chr4 70727305 70727550 -84902570 + MTEb LTR MaLR 78 376 -3 3 1124 540 345 57 13 chr4 70727625 70727854 -84902266 + MTEb-int LTR MaLR 16 254 -1326 3 1124 959 216 39 82 chr4 70727857 70728089 -84902031 - MTD LTR MaLR 0 419 198 3 1124 1101 166 44 0 chr4 70728105 70728310 -84901810 - Lx2 LINE L1 -9 6988 6775 3 1124 10225 166 33 14 chr4 70728310 70731075 -84899045 - Lx2 LINE L1 -354 6643 3839 3 1124 21 71 0 0 chr4 70731236 70731278 -84898842 + AT_rich Low_complexity Low_complexity 1 42 0 3 1124 1936 278 122 9 chr4 70731531 70732311 -84897809 + RCHARR1 DNA MER1_type 27 894 -80 3 1124 2133 110 19 0 chr4 70733015 70733334 -84896786 + IAPEY2_LTR LTR ERVK 33 357 0 3 1124 1588 141 27 34 chr4 70733334 70733627 -84896493 + IAPEY3-int LTR ERVK 1 291 -7389 3 1124 8245 123 4 19 chr4 70734168 70735448 -84894672 + IAPEy-int LTR ERVK 6253 7513 0 3 1124 2080 116 19 0 chr4 70735458 70735778 -84894342 + IAPEY2_LTR LTR ERVK 32 357 0 3 1124 283 248 0 121 chr4 70737509 70737633 -84892487 + MLT1B LTR MaLR 116 224 -166 3 1124 236 261 92 0 chr4 70737701 70737766 -84892354 + MLT1B LTR MaLR 347 417 -50 3 1124 274 320 0 10 chr4 70738051 70738149 -84891971 - Cheshire DNA MER1_type -2189 231 135 3 1124 1009 97 7 20 chr4 70738183 70738320 -84891800 + B1_Mus1 SINE Alu 1 138 -10 3 1124 369 0 0 0 chr4 70738320 70738361 -84891759 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1124 2469 255 78 9 chr4 70739287 70740054 -84890066 + Lx2B LINE L1 417 1236 -6492 3 1124 9713 72 11 0 chr4 70740055 70741002 -84889118 + L1Md_F2 LINE L1 4287 5234 -649 3 1124 711 35 0 0 chr4 70741002 70741088 -84889032 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1124 9713 72 11 0 chr4 70741088 70741426 -84888694 + L1Md_F2 LINE L1 5235 5584 -299 3 1124 8070 45 1 3 chr4 70741426 70742412 -84887708 + L1Md_F2 LINE L1 5587 6570 -12 3 1124 669 175 12 37 chr4 70742412 70742630 -84887490 + Lx2B LINE L1 1236 1386 -4494 3 1124 962 208 48 15 chr4 70742665 70742934 -84887186 + L1_Mur3 LINE L1 1376 1653 -4227 3 1124 485 245 7 14 chr4 70743463 70743608 -84886512 + Lx7 LINE L1 863 1006 -6722 3 1124 992 152 111 5 chr4 70743608 70743806 -84886314 + RMER6C LTR ERVK 472 690 0 3 1124 2864 240 28 2 chr4 70743807 70744417 -84885703 + Lx7 LINE L1 6618 7243 -453 3 1124 272 27 27 0 chr4 70744437 70744474 -84885646 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 1124 783 280 80 57 chr4 70744550 70744679 -84885441 + Lx7 LINE L1 7248 7379 -317 3 1124 402 21 0 0 chr4 70744679 70744726 -84885394 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1124 783 280 80 57 chr4 70744726 70745035 -84885085 + Lx7 LINE L1 7380 7695 -1 3 1124 471 78 0 0 chr4 70745200 70745264 -84884856 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1124 25 65 0 0 chr4 70745282 70745328 -84884792 + AT_rich Low_complexity Low_complexity 1 46 0 3 1124 550 296 88 57 chr4 70746457 70746754 -84883366 + Lx7 LINE L1 6769 7074 -622 3 1124 609 52 0 0 chr4 70746976 70747053 -84883067 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 3 1124 22 0 0 0 chr4 70747057 70747079 -84883041 + AT_rich Low_complexity Low_complexity 1 22 0 3 1124 631 321 88 11 chr4 70747608 70747891 -84882229 - MER58B DNA MER1_type -6 335 31 3 1124 250 246 0 0 chr4 70747970 70748031 -84882089 + Lx5 LINE L1 6987 7047 -3 3 1124 620 172 0 36 chr4 70748164 70748303 -84881817 - Lx LINE L1 -3 6651 6518 3 1124 2210 234 49 60 chr4 70748375 70749316 -84880804 + RMER1B Other Other 11 1065 -1 3 1124 3369 147 53 7 chr4 70750240 70750809 -84879311 + Lx3B LINE L1 6374 6968 -5 3 1124 301 290 59 20 chr4 70751261 70751363 -84878757 - L2b LINE L2 0 3375 3270 3 1124 281 353 0 0 chr4 70751731 70751833 -84878287 - PB1D10 SINE Alu -9 108 7 3 1124 567 187 0 126 chr4 70752134 70752324 -84877796 - RLTR28 LTR ERVL -14 510 345 3 1124 423 265 93 37 chr4 70752329 70752490 -84877630 + RMER20B LTR ERVK 6 175 -452 3 1124 828 218 51 50 chr4 70752506 70752826 -84877294 - RLTR28B LTR ERVL -41 483 207 3 1124 669 214 31 8 chr4 70752826 70752953 -84877167 + ETnERV2-int LTR ERVK 7073 7202 -204 3 1124 1213 167 5 9 chr4 70753336 70753553 -84876567 - RLTR28B LTR ERVL -265 216 1 3 1124 213 197 0 0 chr4 70753780 70753851 -84876269 + GA-rich Low_complexity Low_complexity 2 72 0 3 1124 219 139 0 0 chr4 70754918 70754954 -84875166 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1124 240 111 0 0 chr4 70755056 70755092 -84875028 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1124 226 298 0 0 chr4 70755901 70755958 -84874162 + (TTG)n Simple_repeat Simple_repeat 1 57 0 3 1124 347 141 0 15 chr4 70755958 70756023 -84874097 + CT-rich Low_complexity Low_complexity 3 66 0 3 1124 1967 205 100 25 chr4 70757141 70757651 -84872469 + RLTR31_Mm LTR ERVK 14 561 0 3 1124 661 241 80 130 chr4 70757652 70757787 -84872333 + RMER3D-int LTR ERVK 2 123 -2719 3 1124 230 0 33 0 chr4 70757787 70757817 -84872303 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1124 1113 63 7 0 chr4 70757820 70757962 -84872158 - B1_Mm SINE Alu 0 147 5 3 1124 1947 220 76 92 chr4 70757962 70759069 -84871051 + RMER3D-int LTR ERVK 124 1681 -1161 3 1124 480 18 0 0 chr4 70759072 70759129 -84870991 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 3 1124 3144 44 3 0 chr4 70759130 70759514 -84870606 - L1Md_F3 LINE L1 -33 6551 6167 3 1124 2497 110 2 15 chr4 70759511 70759917 -84870203 - L1_Mm LINE L1 -2487 3396 2996 3 1124 14264 40 7 2 chr4 70759915 70762331 -84867789 - L1Md_T LINE L1 -2 6580 4151 3 1124 13259 89 2 11 chr4 70762322 70764893 -84865227 - L1Md_T LINE L1 -2875 3008 462 3 1124 1853 176 90 39 chr4 70764896 70765387 -84864733 + RMER3D-int LTR ERVK 1669 2184 -658 3 1124 1316 225 11 14 chr4 70765395 70765670 -84864450 + RLTR17 LTR ERVK 396 669 -23 3 1124 388 276 34 132 chr4 70765672 70765906 -84864214 + RLTR31_Mm LTR ERVK 351 561 0 3 1124 180 354 24 12 chr4 70766171 70766254 -84863866 + MIRb SINE MIR 180 263 -5 3 1124 213 108 0 0 chr4 70766566 70766603 -84863517 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1124 429 354 111 48 chr4 70767335 70767587 -84862533 + B4 SINE B4 21 288 -4 3 1124 180 176 0 0 chr4 70767982 70768016 -84862104 + CT-rich Low_complexity Low_complexity 3 36 0 3 1124 852 114 139 0 chr4 70768396 70768554 -84861566 + RLTR47_MM LTR ERV1 353 532 0 3 1124 2244 138 139 23 chr4 70768572 70769004 -84861116 - RLTR45 LTR ERVK 0 482 1 3 1124 243 0 0 0 chr4 70769501 70769528 -84860592 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1124 297 328 46 56 chr4 70769546 70769859 -84860261 + MuRRS4-int LTR ERV1 475 780 -6821 3 1124 961 322 30 51 chr4 70770096 70770903 -84859217 + MuRRS4-int LTR ERV1 1159 2014 -5764 3 1124 300 360 25 38 chr4 70771359 70771726 -84858394 + MuRRS4-int LTR ERV1 4662 5023 -40 3 1124 2179 104 148 0 chr4 70771726 70772110 -84858010 + RLTR47_MM LTR ERV1 1 441 -91 3 1124 485 313 19 26 chr4 70773649 70773803 -84856317 - RSINE1 SINE B4 -1 164 12 3 1124 912 49 0 0 chr4 70774749 70774871 -84855249 + (TG)n Simple_repeat Simple_repeat 2 123 0 3 1124 553 275 12 94 chr4 70776051 70776296 -84853824 - L1_Rod LINE L1 -659 5188 4964 3 1124 651 230 51 112 chr4 70776376 70776689 -84853431 - L1M2 LINE L1 -2308 3835 3542 3 1124 764 218 7 13 chr4 70776778 70776927 -84853193 + B1_Mur1 SINE Alu 1 148 -1 3 1124 1121 234 25 62 chr4 70776993 70777398 -84852722 - L1_Rod LINE L1 -3747 2100 1711 3 140 26053 109 4 19 chr4 70777410 70780512 -84849608 - L1_Mus1 LINE L1 -1 6566 3486 3 1125 243 0 0 0 chr4 70780512 70780539 -84849581 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1125 26053 126 5 24 chr4 70780539 70781484 -84848636 - L1_Mus1 LINE L1 -2398 3485 2585 3 1125 652 172 93 43 chr4 70781484 70781624 -84848496 - B1_Mus1 SINE Alu 0 148 2 3 1125 26053 126 5 24 chr4 70781624 70782548 -84847572 - L1_Mus1 LINE L1 -3299 2584 1685 3 1125 33437 85 16 12 chr4 70782525 70788699 -84841421 - L1_Mus1 LINE L1 0 6582 380 3 1125 590 312 50 0 chr4 70789371 70789573 -84840547 + B3 SINE B2 5 216 0 3 1125 387 0 0 0 chr4 70789942 70789985 -84840135 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1125 329 299 24 57 chr4 70790590 70790714 -84839406 - L2c LINE L2 -18 3369 3250 3 1125 1948 149 3 0 chr4 70790902 70791204 -84838916 - ORR1A4 LTR MaLR -26 303 1 3 1125 845 123 7 0 chr4 70791237 70791375 -84838745 + (TC)n Simple_repeat Simple_repeat 1 139 0 3 1125 192 158 0 0 chr4 70792773 70792811 -84837309 + A-rich Low_complexity Low_complexity 1 38 0 3 1125 242 303 142 19 chr4 70793216 70793371 -84836749 + MER3 DNA MER1_type 31 204 -5 3 1125 653 316 58 69 chr4 70794209 70794556 -84835564 + MLT1A LTR MaLR 28 370 -4 3 1125 635 265 11 107 chr4 70796211 70796473 -84833647 + Lx7 LINE L1 7056 7292 -404 3 1125 10066 136 9 5 chr4 70796657 70799128 -84830992 - L1_Mus3 LINE L1 -3 6635 4153 3 1125 19364 54 7 2 chr4 70799110 70802263 -84827857 - L1Md_F3 LINE L1 -3 6581 3411 3 1125 34094 70 21 14 chr4 70802261 70808178 -84821942 - L1Md_T LINE L1 -207 6378 469 3 1125 2125 182 2 14 chr4 70808207 70808630 -84821490 - L1_Mus3 LINE L1 -1714 4169 3752 3 1125 6411 124 5 1 chr4 70808629 70809635 -84820485 - L1_Mus3 LINE L1 -3052 2831 1822 3 1125 376 226 35 61 chr4 70809656 70809854 -84820266 - MurERV4-int LTR ERVK -1037 5513 5321 3 1125 498 259 16 46 chr4 70809887 70810072 -84820048 - RMER4A LTR ERVK -28 557 270 3 1125 8065 265 62 24 chr4 70810090 70813222 -84816898 - MurERV4-int LTR ERVK -80 5180 2652 3 1125 772 317 58 26 chr4 70813221 70813648 -84816472 - MurERV4-int LTR ERVK -7112 1847 1407 3 1125 1934 330 46 10 chr4 70813659 70814591 -84815529 - MurERV4-int LTR ERVK -7580 1379 414 3 1125 576 0 0 0 chr4 70814904 70814968 -84815152 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 3 1125 396 77 25 13 chr4 70815014 70815093 -84815027 + (TTTTG)n Simple_repeat Simple_repeat 1 80 0 3 1125 1134 68 0 7 chr4 70815093 70815240 -84814880 - B1_Mus1 SINE Alu 0 148 3 3 1125 248 284 101 36 chr4 70815715 70815883 -84814237 - RLTR20C LTR ERVK -266 268 90 3 1125 228 35 0 0 chr4 70815896 70815925 -84814195 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1125 9606 79 3 140 chr4 70816230 70817983 -84812137 + L1Md_F2 LINE L1 2906 4417 -1466 3 1125 895 53 23 0 chr4 70817983 70818115 -84812005 + L1Md_F2 LINE L1 6448 6582 0 3 1125 10610 85 2 6 chr4 70818115 70819603 -84810517 + L1Md_F2 LINE L1 4147 5588 -298 3 1125 6691 90 43 7 chr4 70819604 70820565 -84809555 + L1Md_F2 LINE L1 5587 6581 -1 3 1125 442 279 84 28 chr4 70820570 70820784 -84809336 + L1MC2 LINE L1 5814 6039 -305 4 1125 7983 53 1 0 chr4 70821726 70822752 -84807368 - L1Md_F2 LINE L1 -12 6570 5544 4 1125 555 332 9 5 chr4 70822965 70823189 -84806931 - Lx8 LINE L1 -470 7003 6779 4 1125 791 344 70 17 chr4 70824650 70825177 -84804943 - Lx8 LINE L1 -20 7453 6899 4 1125 228 288 60 115 chr4 70828216 70828416 -84801704 + Lx7 LINE L1 6635 6823 -873 4 1125 405 0 0 0 chr4 70828431 70828476 -84801644 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 4 1125 1089 125 0 6 chr4 70828476 70828637 -84801483 - B2_Mm2 SINE B2 -34 161 2 4 1125 915 345 68 15 chr4 70828641 70829111 -84801009 + Lx7 LINE L1 6818 7312 -384 4 1125 432 139 0 0 chr4 70829139 70829218 -84800902 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1125 21 0 0 0 chr4 70829340 70829361 -84800759 + AT_rich Low_complexity Low_complexity 1 21 0 4 1125 371 247 33 33 chr4 70829734 70829826 -84800294 + PB1D10 SINE Alu 5 96 -21 4 1125 383 276 59 56 chr4 70829856 70830153 -84799967 + L1MB8 LINE L1 5666 5971 -203 4 1125 705 142 21 0 chr4 70830156 70830297 -84799823 + CT-rich Low_complexity Low_complexity 1 144 0 4 1125 265 145 32 0 chr4 70830328 70830390 -84799730 + CT-rich Low_complexity Low_complexity 2 65 0 4 1125 6806 139 18 60 chr4 70830487 70832271 -84797849 + L1VL4 LINE L1 565 2363 -3520 4 1125 825 49 0 0 chr4 70832271 70832373 -84797747 + MURVY-LTR LTR ERV1 1 102 -417 4 1125 1022 84 7 0 chr4 70832371 70832514 -84797606 + MURVY-LTR LTR ERV1 376 519 0 4 1125 6806 139 18 60 chr4 70832514 70832902 -84797218 + L1VL4 LINE L1 2364 2756 -3127 4 1125 5876 156 18 73 chr4 70832899 70834168 -84795952 + Lx LINE L1 4721 5905 -1092 4 1125 2665 197 35 0 chr4 70834168 70834706 -84795414 + Lx LINE L1 6096 6652 -2 4 1125 1240 105 22 0 chr4 70835318 70835499 -84794621 + B2_Mm2 SINE B2 2 186 -9 4 1125 423 320 22 6 chr4 70836137 70836316 -84793804 - Lx9 LINE L1 -238 7406 7225 4 1125 1751 320 58 40 chr4 70836327 70837122 -84792998 - Lx9 LINE L1 -461 7183 6375 4 1125 447 332 32 12 chr4 70837386 70837639 -84792481 - L1ME1 LINE L1 -122 6057 5800 4 1125 2077 132 6 0 chr4 70837776 70838093 -84792027 + ORR1A2 LTR MaLR 1 319 -8 4 1125 1260 238 61 4 chr4 70838274 70838552 -84791568 + MTD LTR MaLR 111 404 -15 4 1125 682 289 36 21 chr4 70838610 70838804 -84791316 - B3A SINE B2 0 198 2 4 1125 235 268 121 20 chr4 70838829 70838928 -84791192 - PB1D7 SINE Alu -8 112 4 4 1125 1337 110 11 0 chr4 70839623 70839814 -84790306 - B2_Mm1t SINE B2 0 193 1 4 1125 430 320 15 5 chr4 70840624 70840822 -84789298 - L1MCc LINE L1 -6101 322 123 4 1125 24 32 0 0 chr4 70840829 70840860 -84789260 + AT_rich Low_complexity Low_complexity 1 31 0 4 1125 342 152 39 29 chr4 70842285 70842387 -84787733 - Lx7 LINE L1 -138 7558 7456 4 1125 1285 261 101 147 chr4 70842493 70843050 -84787070 - Lx7 LINE L1 -237 7459 6929 4 1125 22 0 0 0 chr4 70844755 70844777 -84785343 + AT_rich Low_complexity Low_complexity 1 22 0 4 1125 603 309 55 0 chr4 70844782 70844983 -84785137 + B3 SINE B2 2 213 -3 4 1125 278 284 208 39 chr4 70846339 70846493 -84783627 - MTE-int LTR MaLR -542 1038 859 4 1125 497 290 107 50 chr4 70847402 70847700 -84782420 - ORR1E LTR MaLR -42 317 3 4 1125 187 306 158 26 chr4 70847706 70847820 -84782300 + MER5A DNA MER1_type 50 178 -11 4 1125 285 29 0 0 chr4 70847968 70848002 -84782118 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1125 1052 101 0 0 chr4 70848002 70848140 -84781980 - B1_Mus1 SINE Alu -10 138 1 4 1125 24 67 0 0 chr4 70848749 70848794 -84781326 + AT_rich Low_complexity Low_complexity 1 45 0 4 1125 594 71 40 10 chr4 70849483 70849583 -84780537 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 4 1125 892 141 14 77 chr4 70849583 70849791 -84780329 - Lx3A LINE L1 -2 6979 6785 4 1125 2850 124 2 19 chr4 70849791 70850218 -84779902 + Lx3A LINE L1 6387 6806 -175 4 1125 651 26 0 0 chr4 70850237 70850314 -84779806 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1125 4235 132 28 0 chr4 70850317 70850963 -84779157 - Lx2A1 LINE L1 -7 7001 6338 4 1125 323 269 69 35 chr4 70850963 70851136 -84778984 + Lx8 LINE L1 7235 7413 -60 4 1125 28 29 0 0 chr4 70851260 70851295 -84778825 + AT_rich Low_complexity Low_complexity 1 35 0 4 1125 7438 72 12 0 chr4 70853422 70854448 -84775672 + L1_Mus2 LINE L1 5529 6566 0 4 1125 27 29 0 0 chr4 70854882 70854916 -84775204 + AT_rich Low_complexity Low_complexity 1 34 0 4 1125 26 30 0 0 chr4 70854942 70854975 -84775145 + AT_rich Low_complexity Low_complexity 1 33 0 4 1125 693 288 89 91 chr4 70855614 70856088 -84774032 + RLTR12B LTR ERVK 11 483 -45 4 1125 636 243 108 5 chr4 70856796 70856982 -84773138 + B3 SINE B2 2 206 -10 4 1125 228 243 27 41 chr4 70857535 70857608 -84772512 + MLT1D LTR MaLR 63 134 -371 4 1125 213 318 94 0 chr4 70857902 70857987 -84772133 - PB1D7 SINE Alu -27 93 1 4 1125 271 233 17 0 chr4 70857989 70858049 -84772071 + MLT1D LTR MaLR 445 505 0 4 1125 785 304 72 43 chr4 70859224 70859753 -84770367 + Lx9 LINE L1 5898 6441 -1203 4 1125 329 380 19 9 chr4 70859803 70859908 -84770212 + PB1D10 SINE Alu 1 107 -41 4 1125 409 325 108 66 chr4 70859928 70860097 -84770023 + L1M5 LINE L1 3253 3440 -2706 4 1125 186 43 0 0 chr4 70860097 70860120 -84770000 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1125 409 325 108 66 chr4 70860120 70860359 -84769761 + L1M5 LINE L1 3441 3677 -2469 4 1125 210 143 0 0 chr4 70861013 70861048 -84769072 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1125 495 0 0 0 chr4 70861565 70861620 -84768500 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1125 274 327 44 61 chr4 70861632 70861746 -84768374 - RSINE1 SINE B4 -32 133 22 4 1125 25 31 0 0 chr4 70862073 70862105 -84768015 + AT_rich Low_complexity Low_complexity 1 32 0 4 1125 694 278 168 9 chr4 70862458 70862922 -84767198 - L1MCa LINE L1 -4732 2019 1482 4 1125 473 303 68 30 chr4 70863275 70863571 -84766549 - L1MCa LINE L1 -5066 979 673 4 1125 837 0 0 0 chr4 70864638 70864731 -84765389 + (GAA)n Simple_repeat Simple_repeat 3 95 0 4 1125 361 254 0 0 chr4 70864959 70865030 -84765090 + tRNA-Gly-GGY tRNA tRNA 2 72 -2 4 1125 855 195 29 0 chr4 70865042 70865216 -84764904 + B2_Mm2 SINE B2 3 181 -14 4 1125 21 36 0 0 chr4 70866040 70866068 -84764052 + AT_rich Low_complexity Low_complexity 1 28 0 4 1125 9597 107 12 18 chr4 70866223 70867745 -84762375 - Lx3_Mus LINE L1 -5 7004 5494 4 1125 3238 91 9 88 chr4 70867697 70868264 -84761856 + Lx3_Mus LINE L1 5029 5550 -336 4 1125 231 61 0 0 chr4 70868615 70868648 -84761472 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1125 589 218 30 15 chr4 70868716 70868851 -84761269 + L1_Mur2 LINE L1 707 843 -6243 4 1125 13611 156 21 37 chr4 70868848 70869866 -84760254 + L1_Mur2 LINE L1 1010 2034 -3843 4 1125 270 0 0 0 chr4 70869866 70869896 -84760224 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1125 13611 153 24 44 chr4 70869896 70870119 -84760001 + L1_Mur2 LINE L1 2035 2251 -3626 4 1125 2727 69 0 0 chr4 70870119 70870465 -84759655 - ORR1A1 LTR MaLR 0 346 1 4 1125 13611 153 24 44 chr4 70870465 70871685 -84758435 + L1_Mur2 LINE L1 2252 3430 -2447 4 1125 432 0 0 0 chr4 70871685 70871733 -84758387 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1125 13611 153 24 44 chr4 70871733 70872257 -84757863 + L1_Mur2 LINE L1 3431 3940 -1937 4 1125 3297 38 5 2 chr4 70872257 70872652 -84757468 + MTA_Mm LTR MaLR 1 396 0 4 1125 13611 153 24 44 chr4 70872652 70872670 -84757450 + L1_Mur2 LINE L1 3941 3957 -1920 4 1125 1888 155 11 66 chr4 70872678 70873058 -84757062 + L1_Mur2 LINE L1 5370 5728 -149 4 1125 27234 90 31 5 chr4 70873047 70877045 -84753075 + L1Md_F2 LINE L1 1485 5585 -298 4 1125 7188 79 27 2 chr4 70877046 70878018 -84752102 + L1Md_F2 LINE L1 5587 6582 0 4 1125 207 0 0 0 chr4 70881589 70881612 -84748508 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1125 465 19 0 0 chr4 70882627 70882681 -84747439 + (TAA)n Simple_repeat Simple_repeat 1 54 0 4 1125 770 101 25 0 chr4 70882909 70883028 -84747092 - Lx LINE L1 -684 5970 5849 4 1125 884 207 45 45 chr4 70883261 70883463 -84746657 - Lx LINE L1 -170 6484 6283 4 1125 2622 130 115 102 chr4 70883479 70884104 -84746016 - L1_Mus2 LINE L1 0 6566 5934 4 1125 936 127 0 18 chr4 70884104 70884272 -84745848 + Lx LINE L1 6488 6652 -2 4 1125 1071 277 96 12 chr4 70884902 70885245 -84744875 + MTD LTR MaLR 48 419 0 4 1125 22 35 0 0 chr4 70885480 70885509 -84744611 + AT_rich Low_complexity Low_complexity 1 29 0 4 1125 263 206 179 32 chr4 70887819 70887914 -84742206 - RLTR42-int LTR ERVK -4134 1388 1280 4 1125 365 292 69 78 chr4 70888088 70888292 -84741828 - HAL1-3A_ME LINE L1 -680 2178 1977 4 1125 242 269 15 15 chr4 70888303 70888371 -84741749 - ID4_ SINE ID -11 72 5 4 1125 280 333 51 34 chr4 70888840 70888958 -84741162 + MER58B DNA MER1_type 222 341 0 4 1125 543 210 111 16 chr4 70889633 70889759 -84740361 + B1_Mur1 SINE Alu 12 149 0 4 1125 23 0 0 0 chr4 70892435 70892458 -84737662 + AT_rich Low_complexity Low_complexity 1 23 0 4 1125 201 242 0 0 chr4 70892705 70892767 -84737353 + T-rich Low_complexity Low_complexity 1 62 0 4 1125 513 32 0 0 chr4 70892988 70893051 -84737069 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1125 222 37 0 0 chr4 70893287 70893314 -84736806 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1125 211 224 0 0 chr4 70893433 70893482 -84736638 + T-rich Low_complexity Low_complexity 1 49 0 4 1125 243 0 0 0 chr4 70893493 70893520 -84736600 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1125 1045 82 0 0 chr4 70893520 70893655 -84736465 - B1_Mus2 SINE Alu -10 137 3 4 1125 530 51 13 0 chr4 70893670 70893748 -84736372 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 4 1125 741 48 76 0 chr4 70893748 70893853 -84736267 - B1_Mm SINE Alu -12 135 23 4 1125 219 114 0 0 chr4 70893867 70893902 -84736218 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 4 1125 977 92 0 0 chr4 70894047 70894178 -84735942 - L1_Mus3 LINE L1 -216 6422 6292 4 1125 1822 100 7 4 chr4 70894178 70894450 -84735670 + L1_Mus3 LINE L1 6366 6638 0 4 1125 1352 175 110 0 chr4 70894947 70895350 -84734770 + L1_Mur2 LINE L1 958 1429 -4448 4 1125 1637 275 88 55 chr4 70895352 70896329 -84733791 - L1_Rod LINE L1 -1275 4572 3564 4 1125 28070 112 10 21 chr4 70896338 70901830 -84728290 + L1Md_F2 LINE L1 286 5579 -298 4 1125 7415 72 4 9 chr4 70901831 70902830 -84727290 + L1Md_F2 LINE L1 5587 6580 -2 4 1125 319 219 99 23 chr4 70902898 70903029 -84727091 - L1_Rod LINE L1 -2346 3501 3361 4 1125 236 248 83 28 chr4 70903051 70903159 -84726961 - L1_Rod LINE L1 -2464 3383 3270 4 1125 301 202 17 52 chr4 70903177 70903292 -84726828 - Lx5 LINE L1 -5 7045 6935 4 1125 1489 253 55 38 chr4 70903300 70903859 -84726261 - L1_Rod LINE L1 -2583 3264 2696 4 1125 1654 227 75 50 chr4 70903874 70904371 -84725749 - RMER1A Other Other 0 1066 565 4 1125 1557 189 20 69 chr4 70904383 70904852 -84725268 + RMER17C LTR ERVK 22 431 -527 4 1125 430 312 144 0 chr4 70904864 70905024 -84725096 - RMER1B Other Other -882 184 2 4 1125 274 352 0 33 chr4 70905470 70905561 -84724559 + RSINE1 SINE B4 78 165 0 5 1125 2655 248 56 88 chr4 70905692 70906435 -84723685 - L1_Rod LINE L1 -3161 2686 1956 4 1125 237 65 0 0 chr4 70906435 70906466 -84723654 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1125 2655 248 56 88 chr4 70906466 70906859 -84723261 - L1_Rod LINE L1 -3892 1955 1585 4 1125 2976 57 28 8 chr4 70906859 70907247 -84722873 - MTA_Mm LTR MaLR 0 396 1 5 1125 1904 252 37 22 chr4 70907271 70907815 -84722305 - L1_Rod LINE L1 -6301 1307 756 4 1125 228 143 0 0 chr4 70908534 70908576 -84721544 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1125 535 367 5 15 chr4 70909262 70909464 -84720656 + B3 SINE B2 11 210 -6 5 140 606 268 129 7 chr4 70909768 70910072 -84720048 + L1MA4A LINE L1 4666 5068 -1075 5 1126 236 319 13 96 chr4 70910228 70910384 -84719736 - RMER4B LTR ERVK -388 197 55 5 1126 228 100 0 0 chr4 70910434 70910474 -84719646 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1126 1150 315 49 32 chr4 70910565 70911328 -84718792 + L1MA4A LINE L1 5115 5930 -373 5 1126 183 80 0 0 chr4 70911336 70911361 -84718759 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 5 1126 777 253 21 16 chr4 70912015 70912204 -84717916 + B3A SINE B2 3 192 -6 5 1126 1545 206 68 28 chr4 70912247 70912602 -84717518 - Lx LINE L1 0 6654 6286 5 1126 381 216 11 16 chr4 70913008 70913130 -84716990 + Lx7 LINE L1 5341 5458 -845 5 1126 428 238 96 78 chr4 70913127 70913346 -84716774 + Lx7 LINE L1 5703 5925 -1548 5 1126 21 0 0 0 chr4 70913600 70913621 -84716499 + AT_rich Low_complexity Low_complexity 1 21 0 5 1126 6548 213 23 21 chr4 70914753 70916171 -84713949 - Lx5 LINE L1 -3 7047 5628 5 1126 523 389 42 11 chr4 70917063 70917328 -84712792 + B4A SINE B4 8 280 -12 5 1126 575 71 12 0 chr4 70917350 70917435 -84712685 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1126 4336 87 8 3 chr4 70917670 70918261 -84711859 - L1_Mus3 LINE L1 -25 6613 6020 5 1126 24 32 0 0 chr4 70920364 70920395 -84709725 + AT_rich Low_complexity Low_complexity 1 31 0 5 1126 22 0 0 0 chr4 70920572 70920594 -84709526 + AT_rich Low_complexity Low_complexity 1 22 0 5 1126 26392 83 1 27 chr4 70921844 70925987 -84704133 + L1Md_F LINE L1 409 4430 -1453 5 1126 2949 62 23 0 chr4 70925987 70926374 -84703746 + L1Md_F3 LINE L1 6189 6584 0 5 1126 26392 85 1 33 chr4 70926374 70926950 -84703170 + L1Md_F LINE L1 4431 5000 -883 5 1126 816 274 54 25 chr4 70926995 70927309 -84702811 - L1_Rod LINE L1 -1782 4104 3782 5 1126 2521 261 46 82 chr4 70927311 70927513 -84702607 + RMER17B LTR ERVK 1 195 -763 5 1126 2401 109 3 70 chr4 70927513 70927898 -84702222 + RLTR10D LTR ERVK 1 359 0 5 1126 2521 261 46 82 chr4 70927898 70928644 -84701476 + RMER17B LTR ERVK 196 915 -43 5 1126 667 284 193 6 chr4 70928704 70928868 -84701252 - L1_Rod LINE L1 -2133 3747 3548 5 1126 1068 266 63 6 chr4 70928868 70929231 -84700889 - ORR1C2 LTR MaLR 0 384 1 5 1126 667 284 193 6 chr4 70929231 70929711 -84700409 - L1_Rod LINE L1 -2333 3547 2970 5 1126 7933 33 4 8 chr4 70929711 70930677 -84699443 + L1Md_F3 LINE L1 5609 6570 -14 5 1126 667 277 58 24 chr4 70930677 70930853 -84699267 - L1_Rod LINE L1 -2857 2990 2808 5 1126 3380 233 33 126 chr4 70930849 70931968 -84698152 - RMER1B Other Other -6 1060 46 5 1126 618 75 0 0 chr4 70932060 70932153 -84697967 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1126 1188 0 0 0 chr4 70932155 70932287 -84697833 + (GGGAGA)n Simple_repeat Simple_repeat 3 134 0 5 1126 631 271 128 31 chr4 70932359 70932594 -84697526 - L1_Rod LINE L1 -3028 2819 2578 5 1126 261 0 0 0 chr4 70932594 70932623 -84697497 + (TGG)n Simple_repeat Simple_repeat 1 29 0 5 1126 631 271 128 31 chr4 70932623 70932810 -84697310 - L1_Rod LINE L1 -3270 2577 2358 5 1126 1665 267 65 21 chr4 70932818 70933491 -84696629 - L1_Rod LINE L1 -3868 1979 1277 5 1126 399 270 61 0 chr4 70933579 70933727 -84696393 - L1_Rod LINE L1 -6460 1148 992 5 1126 230 322 0 0 chr4 70933941 70934000 -84696120 + PB1D10 SINE Alu 59 117 0 5 1126 253 368 0 0 chr4 70934110 70934178 -84695942 + ID4 SINE ID 6 73 -10 5 1126 1782 146 12 65 chr4 70934897 70935234 -84694886 + RLTR23 LTR ERV1 109 427 -3 5 1126 245 272 130 0 chr4 70935238 70935370 -84694750 + L1M3 LINE L1 5394 5539 -632 5 1126 395 312 0 0 chr4 70935370 70935466 -84694654 + RMER1A Other Other 250 345 -685 5 1126 1547 188 42 3 chr4 70935462 70935772 -84694348 + RMER1A Other Other 699 1020 -10 5 1126 277 212 10 0 chr4 70935794 70935855 -84694265 + L1M2 LINE L1 5484 5548 -752 5 1126 4429 104 37 1 chr4 70936069 70936724 -84693396 + RLTR33 LTR ERVK 1 678 0 5 1126 325 86 0 0 chr4 70936814 70936872 -84693248 - L1Md_F2 LINE L1 -2 6580 6523 5 1126 5969 129 42 0 chr4 70937057 70937845 -84692275 + L1VL4 LINE L1 20 845 -5457 5 1126 243 61 0 0 chr4 70937845 70937878 -84692242 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1126 10057 102 25 12 chr4 70937878 70939493 -84690627 + MusHAL1 LINE L1 1 1636 -1076 5 1126 273 329 59 26 chr4 70939562 70939715 -84690405 - Tigger5 DNA MER2_type -2248 158 1 5 1126 423 0 0 0 chr4 70939871 70939918 -84690202 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1126 26 30 0 0 chr4 70939974 70940007 -84690113 + AT_rich Low_complexity Low_complexity 1 33 0 5 1126 1083 58 0 0 chr4 70940007 70940146 -84689974 + (GAAA)n Simple_repeat Simple_repeat 3 141 0 5 1126 229 208 0 0 chr4 70941541 70941594 -84688526 + A-rich Low_complexity Low_complexity 1 53 0 5 1126 37 90 0 0 chr4 70942310 70942410 -84687710 + AT_rich Low_complexity Low_complexity 1 100 0 5 1126 1085 62 7 27 chr4 70942575 70942723 -84687397 + B1_Mus1 SINE Alu 3 147 -1 5 1126 909 202 0 36 chr4 70943937 70944132 -84685988 - RMER6B LTR ERVK 0 461 274 5 1126 1291 264 92 24 chr4 70944200 70944658 -84685462 + RLTR19C LTR ERVK 18 506 0 5 1126 360 0 0 0 chr4 70944748 70944788 -84685332 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 1126 401 287 101 27 chr4 70944881 70945139 -84684981 + Charlie5 DNA MER1_type 2333 2609 -15 5 1126 1113 247 9 3 chr4 70946624 70946965 -84683155 + L1_Mur3 LINE L1 970 1312 -6400 5 1126 363 121 0 0 chr4 70947746 70947804 -84682316 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1126 322 317 0 10 chr4 70948503 70948605 -84681515 - MTEa LTR MaLR 0 379 279 5 1126 1449 238 24 24 chr4 70949123 70949493 -84680627 + RLTR14 LTR ERV1 13 382 0 5 1126 572 205 51 0 chr4 70949602 70949719 -84680401 + ETnERV2-int LTR ERVK 7070 7192 -214 5 1126 180 111 0 0 chr4 70950238 70950265 -84679855 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1126 342 0 0 0 chr4 70950629 70950667 -84679453 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1126 633 27 0 0 chr4 70950667 70950742 -84679378 + (TTC)n Simple_repeat Simple_repeat 3 77 0 5 1126 369 345 7 27 chr4 70950819 70950968 -84679152 + RSINE1 SINE B4 4 149 -16 5 1126 275 71 24 0 chr4 70950970 70951012 -84679108 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1126 296 212 61 0 chr4 70951247 70951313 -84678807 - U6 snRNA snRNA -34 73 4 5 1126 1790 237 90 6 chr4 70951313 70952121 -84677999 + Lx5 LINE L1 6172 7047 -3 5 1126 595 52 0 0 chr4 70952130 70952207 -84677913 - L1_Mm LINE L1 -442 5441 5365 5 1126 273 100 0 0 chr4 70952207 70952247 -84677873 - L1_Mur3 LINE L1 -495 5385 5346 5 1126 2744 67 3 0 chr4 70952249 70952593 -84677527 + IAPLTR4 LTR ERVK 1 345 0 5 1126 728 216 5 75 chr4 70952598 70952798 -84677322 + IAPLTR3-int LTR ERVK 7 192 -6629 5 1126 413 193 74 58 chr4 70952834 70952955 -84677165 + IAPLTR3-int LTR ERVK 358 480 -6341 5 1126 3946 278 17 14 chr4 70953008 70954270 -84675850 + IAPLTR3-int LTR ERVK 440 1705 -5116 5 1126 8030 29 145 0 chr4 70954271 70955356 -84674764 + L1_Mm LINE L1 4343 5586 -297 5 1126 8398 35 1 1 chr4 70955356 70956352 -84673768 + L1Md_T LINE L1 5587 6582 0 5 1126 363 100 0 0 chr4 70956362 70956412 -84673708 + ETnERV2-int LTR ERVK 1550 1599 -6081 5 1126 1492 198 167 58 chr4 70956510 70957025 -84673095 + RMER16-int LTR ERVK 251 821 -4585 5 1126 261 224 110 18 chr4 70957023 70957132 -84672988 + RMER16-int LTR ERVK 1084 1202 -4204 5 1126 261 279 0 55 chr4 70957154 70957245 -84672875 + ETnERV2-int LTR ERVK 2454 2539 -4867 5 1126 630 197 0 0 chr4 70957259 70957376 -84672744 + ETnERV2-int LTR ERVK 2637 2753 -4653 5 1126 3039 137 157 5 chr4 70957404 70958014 -84672106 + ETnERV2-int LTR ERVK 3569 4271 -3135 5 1126 419 198 23 4 chr4 70958019 70958140 -84671980 + MMETn-int LTR ERVK 2362 2464 -2380 5 1126 780 78 17 8 chr4 70958155 70958272 -84671848 + IAPLTR3-int LTR ERVK 4530 4647 -2934 5 1126 5954 239 43 33 chr4 70958558 70960950 -84669170 + IAPLTR3-int LTR ERVK 5176 7329 -351 5 1126 2814 58 3 0 chr4 70960950 70961294 -84668826 + IAPLTR4 LTR ERVK 1 345 0 5 1126 7338 162 4 1 chr4 70961294 70962648 -84667472 - L1_Mm LINE L1 -529 5354 3998 5 1126 6226 106 7 23 chr4 70962637 70963905 -84666215 + L1_Mus3 LINE L1 5442 6654 0 5 1126 434 307 92 23 chr4 70963905 70964165 -84665955 + L1MC4 LINE L1 952 1229 -4986 5 1126 363 23 0 0 chr4 70964168 70964212 -84665908 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 5 1126 270 382 0 19 chr4 70964399 70964503 -84665617 + MER58B DNA MER1_type 226 327 -14 5 1126 417 20 0 0 chr4 70965045 70965095 -84665025 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1126 515 353 56 62 chr4 70965760 70966101 -84664019 + ORR1E LTR MaLR 19 357 -2 5 1126 339 317 129 54 chr4 70966196 70966515 -84663605 + MLT1A1 LTR MaLR 2 335 -30 5 1126 471 107 0 0 chr4 70966725 70966800 -84663320 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1126 186 43 0 0 chr4 70966903 70966926 -84663194 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 5 1126 456 314 56 34 chr4 70966981 70967159 -84662961 + B3A SINE B2 1 182 -16 5 1126 811 288 50 1 chr4 70969731 70970050 -84660070 - ORR1D2 LTR MaLR -8 362 2 5 1126 513 46 0 0 chr4 70970207 70970272 -84659848 - ORR1A2 LTR MaLR 0 327 263 5 1126 277 73 0 0 chr4 70970309 70970364 -84659756 - Lx LINE L1 0 6654 6600 5 1126 1520 165 24 4 chr4 70970364 70970619 -84659501 - ORR1A2 LTR MaLR -63 264 5 5 1126 540 299 19 25 chr4 70970757 70970918 -84659202 + MTD LTR MaLR 3 162 -257 5 1126 959 267 202 24 chr4 70971252 70971707 -84658413 - RMER4B LTR ERVK 0 585 49 5 1126 1555 256 30 42 chr4 70972090 70972522 -84657598 + Lx5 LINE L1 6618 7044 -6 5 1126 21 36 0 0 chr4 70972760 70972788 -84657332 + AT_rich Low_complexity Low_complexity 1 28 0 5 1126 947 137 6 0 chr4 70972815 70972976 -84657144 + (GGAGAA)n Simple_repeat Simple_repeat 4 165 0 5 1126 5180 122 40 27 chr4 70972978 70974122 -84655998 + L1VL2 LINE L1 94 1254 -2361 5 1126 10108 166 25 14 chr4 70974126 70976194 -84653926 + L1_Mur2 LINE L1 3108 5199 -678 5 1126 1445 145 48 33 chr4 70976195 70976466 -84653654 + Lx LINE L1 6367 6641 -13 5 1126 439 45 30 0 chr4 70976466 70976532 -84653588 + (GGA)n Simple_repeat Simple_repeat 1 68 0 5 1126 267 93 0 0 chr4 70976770 70976813 -84653307 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1126 973 200 10 35 chr4 70976947 70977144 -84652976 + MTD LTR MaLR 2 193 -226 5 1126 267 333 80 28 chr4 70977709 70977885 -84652235 + MER74B LTR ERVL 30 227 -395 6 1126 37284 32 1 8 chr4 70978101 70984284 -84645836 - L1Md_T LINE L1 -1 6581 449 6 1126 476 174 86 17 chr4 70984493 70984610 -84645510 - ORR1C2 LTR MaLR -259 125 1 6 1126 2746 240 126 80 chr4 70984877 70985571 -84644549 - Lx7 LINE L1 0 7696 6992 6 1126 2795 103 5 0 chr4 70985571 70985969 -84644151 + MTB LTR MaLR 1 400 0 6 1126 2746 240 126 80 chr4 70985969 70986398 -84643722 - Lx7 LINE L1 -705 6991 6521 6 1126 233 91 0 0 chr4 70986401 70986434 -84643686 - Lx6 LINE L1 -1034 6426 6394 6 1126 234 235 53 41 chr4 70987433 70987602 -84642518 + (CATATA)n Simple_repeat Simple_repeat 1 171 0 6 1126 643 257 52 10 chr4 70987926 70988119 -84642001 - Lx8 LINE L1 -623 6850 6650 6 1126 225 94 0 0 chr4 70988121 70988153 -84641967 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1126 393 137 8 75 chr4 70988191 70988285 -84641835 + ORR1C1 LTR MaLR 1 92 -292 6 1126 1724 244 73 91 chr4 70988288 70988641 -84641479 + Lx7 LINE L1 6998 7354 -342 6 1126 791 10 0 10 chr4 70988641 70988738 -84641382 + (TATTG)n Simple_repeat Simple_repeat 2 97 0 6 1126 1724 244 73 91 chr4 70988738 70988935 -84641185 + Lx7 LINE L1 7355 7532 -164 6 1126 670 23 11 11 chr4 70988935 70989024 -84641096 + (CTATT)n Simple_repeat Simple_repeat 2 90 0 6 1126 1724 244 73 91 chr4 70989024 70989184 -84640936 + Lx7 LINE L1 7533 7696 0 6 1126 278 319 43 17 chr4 70989467 70989582 -84640538 - Lx8 LINE L1 -203 7270 7153 6 1126 1129 318 52 46 chr4 70989579 70990169 -84639951 - Lx8 LINE L1 -256 7217 6624 6 1126 1978 232 34 10 chr4 70990170 70990557 -84639563 + MTC LTR MaLR 1 396 -25 6 1126 987 274 96 125 chr4 70990557 70991191 -84638929 - RLTR18 LTR ERVK 0 616 1 6 1126 336 293 116 36 chr4 70992016 70992154 -84637966 + MLT1D LTR MaLR 32 180 -325 6 1126 410 0 20 0 chr4 70992762 70992812 -84637308 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1126 656 24 12 0 chr4 70993498 70993580 -84636540 + (TTTC)n Simple_repeat Simple_repeat 3 85 0 6 1126 3141 165 27 2 chr4 70993605 70994157 -84635963 - Lx3B LINE L1 -5 6968 6403 6 1126 3194 87 12 37 chr4 70994161 70994677 -84635443 + L1_Mur1 LINE L1 3551 4053 -1833 6 1126 255 250 0 0 chr4 70994832 70994916 -84635204 + (CATA)n Simple_repeat Simple_repeat 1 84 0 6 1126 480 147 105 0 chr4 70994925 70995020 -84635100 + L1_Mur1 LINE L1 4055 4159 -1727 6 1126 21 0 0 0 chr4 70995029 70995050 -84635070 + AT_rich Low_complexity Low_complexity 1 21 0 6 1126 319 220 10 20 chr4 70995356 70995458 -84634662 + (TATG)n Simple_repeat Simple_repeat 2 102 0 6 1126 405 0 0 0 chr4 70996812 70996857 -84633263 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1126 22 0 0 0 chr4 70997351 70997373 -84632747 + AT_rich Low_complexity Low_complexity 1 22 0 6 1126 363 361 107 15 chr4 70998915 70999120 -84631000 + MER21B LTR ERV1 588 811 -52 6 1126 244 85 0 60 chr4 70999435 70999485 -84630635 + (TCC)n Simple_repeat Simple_repeat 3 49 0 6 1126 438 169 0 0 chr4 71000255 71000344 -84629776 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1126 1895 202 83 30 chr4 71001945 71002404 -84627716 + MT2A LTR ERVL 51 533 0 2 1126 368 248 60 0 chr4 71002404 71002521 -84627599 - L1MC LINE L1 -1288 4858 4735 3 1126 324 0 0 0 chr4 71002683 71002719 -84627401 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1126 2908 108 11 22 chr4 71002740 71003185 -84626935 - Lx3A LINE L1 0 6981 6542 5 1126 509 0 16 0 chr4 71003354 71003415 -84626705 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 6 1126 1094 79 0 0 chr4 71003421 71003561 -84626559 - B1_Mm SINE Alu -7 140 1 7 1126 5838 156 21 8 chr4 71003570 71004586 -84625534 - Lx2 LINE L1 0 6997 5969 8 1126 4693 171 11 45 chr4 71004593 71004797 -84625323 - L1_Mur2 LINE L1 -487 5390 5197 9 1126 207 0 0 0 chr4 71004797 71004820 -84625300 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1126 4693 171 11 45 chr4 71004820 71004846 -84625274 - L1_Mur2 LINE L1 -681 5196 5196 1 1126 1003 78 0 60 chr4 71004846 71004996 -84625124 - B1_Mm SINE Alu -6 141 1 1 1126 4693 171 11 45 chr4 71004996 71005726 -84624394 - L1_Mur2 LINE L1 -681 5196 4461 9 1126 3237 107 10 4 chr4 71005726 71006205 -84623915 + L1_Mus4 LINE L1 6155 6636 0 1 1126 297 325 64 38 chr4 71007013 71007170 -84622950 + RMER15 LTR ERVL 347 507 -68 1 1126 764 267 77 28 chr4 71007223 71007712 -84622408 + L1MC3 LINE L1 5403 5943 -2052 1 1126 3193 153 72 38 chr4 71007718 71008383 -84621737 - Lx2B LINE L1 -718 6282 5595 1 1126 3384 210 5 50 chr4 71008384 71009127 -84620993 + Lx2B LINE L1 6280 6989 -11 1 1126 381 22 0 0 chr4 71009148 71009194 -84620926 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1126 7429 56 0 4 chr4 71009342 71010277 -84619843 + L1Md_F2 LINE L1 5640 6570 -12 1 1126 231 276 40 0 chr4 71010529 71010605 -84619515 + ORR1E LTR MaLR 269 347 -12 1 1126 4896 94 37 16 chr4 71011717 71012478 -84617642 + L1_Mus3 LINE L1 5873 6638 0 2 1126 306 69 17 33 chr4 71012503 71012563 -84617557 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1126 845 316 23 27 chr4 71013110 71013448 -84616672 - RLTR18B LTR ERVK 0 512 187 2 1126 2123 198 2 17 chr4 71013639 71014051 -84616069 + MTB_Mm LTR MaLR 2 407 0 2 1126 2350 192 66 8 chr4 71014564 71014666 -84615454 - RMER6-int LTR ERVK -2665 512 394 2 1126 446 0 0 18 chr4 71014666 71014721 -84615399 + (TAA)n Simple_repeat Simple_repeat 2 55 0 2 1126 2350 192 66 8 chr4 71014721 71015102 -84615018 - RMER6-int LTR ERVK -2784 393 1 2 1126 1899 235 126 47 chr4 71015103 71015769 -84614351 - RMER6D LTR ERVK -1 719 1 2 1126 915 239 71 78 chr4 71015774 71016082 -84614038 - RCHARR1 DNA MER1_type -410 564 259 2 1126 31 0 0 0 chr4 71016473 71016504 -84613616 + AT_rich Low_complexity Low_complexity 1 31 0 2 1126 369 0 0 0 chr4 71016606 71016647 -84613473 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1126 311 314 57 16 chr4 71017127 71017250 -84612870 - Lx9 LINE L1 -337 7307 7180 2 1126 648 312 62 15 chr4 71017898 71018158 -84611962 - RLTR18B LTR ERVK -2 510 239 3 1126 644 314 50 82 chr4 71018252 71018571 -84611549 - RLTR18 LTR ERVK -307 309 1 3 1126 1987 202 31 24 chr4 71018748 71019163 -84610957 + MTC LTR MaLR 3 420 -1 3 1126 652 260 52 40 chr4 71019972 71020224 -84609896 + L1_Rod LINE L1 5593 5847 0 3 1126 2014 171 38 5 chr4 71020766 71021353 -84608767 + L1VL4 LINE L1 482 1092 -2467 3 1126 8442 173 4 7 chr4 71021348 71022964 -84607156 + L1_Mur2 LINE L1 2992 4603 -1274 3 1126 1709 159 68 41 chr4 71022964 71023332 -84606788 + RMER10B LTR ERVL 21 398 0 3 1126 1381 190 53 103 chr4 71024018 71024260 -84605860 - RMER10B LTR ERVL -2 396 189 3 1126 1268 79 0 6 chr4 71024260 71024439 -84605681 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 1126 1381 190 53 103 chr4 71024439 71024613 -84605507 - RMER10B LTR ERVL -210 188 1 3 1126 1797 54 0 5 chr4 71027107 71027330 -84602790 - L1_Mus2 LINE L1 -143 6423 6202 3 1126 874 104 90 0 chr4 71027330 71027474 -84602646 + L1_Mus2 LINE L1 6410 6566 0 3 1126 226 308 138 79 chr4 71027597 71027837 -84602283 - MER58B DNA MER1_type 0 341 88 4 1126 225 0 0 0 chr4 71027990 71028015 -84602105 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1126 35 0 0 0 chr4 71028411 71028446 -84601674 + AT_rich Low_complexity Low_complexity 1 35 0 4 1126 32 26 0 0 chr4 71029250 71029289 -84600831 + AT_rich Low_complexity Low_complexity 1 39 0 4 1126 24 53 0 0 chr4 71029413 71029451 -84600669 + AT_rich Low_complexity Low_complexity 1 38 0 4 1126 21 82 0 0 chr4 71029480 71029529 -84600591 + AT_rich Low_complexity Low_complexity 1 49 0 4 1126 22 56 0 0 chr4 71029729 71029765 -84600355 + AT_rich Low_complexity Low_complexity 1 36 0 4 1126 292 287 37 44 chr4 71030249 71030384 -84599736 + L1MB8 LINE L1 5432 5565 -609 4 1126 5290 134 103 2 chr4 71030446 71031717 -84598403 + L1Md_F2 LINE L1 104 1519 -4364 4 1126 28218 90 10 2 chr4 71032272 71032731 -84597389 + L1Md_F2 LINE L1 1511 1969 -3914 4 1126 207 88 0 0 chr4 71032731 71032765 -84597355 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1126 28218 90 10 2 chr4 71032765 71036351 -84593769 + L1Md_F2 LINE L1 1970 5583 -300 4 1126 6792 109 10 13 chr4 71036352 71037349 -84592771 + L1Md_F2 LINE L1 5587 6580 -2 4 1126 252 86 0 0 chr4 71037355 71037390 -84592730 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1126 401 251 85 34 chr4 71037517 71037642 -84592478 + L1MB8 LINE L1 5636 5770 -414 4 1126 612 40 0 0 chr4 71037642 71037717 -84592403 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1126 401 251 85 34 chr4 71037717 71037768 -84592352 + L1MB8 LINE L1 5771 5821 -363 4 1126 227 31 31 0 chr4 71037977 71038009 -84592111 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1126 23 0 0 0 chr4 71038044 71038067 -84592053 + AT_rich Low_complexity Low_complexity 1 23 0 5 1126 364 312 41 87 chr4 71038081 71038299 -84591821 + L1MB8 LINE L1 5970 6177 -1 4 1126 608 299 0 31 chr4 71038771 71038933 -84591187 - RSINE1 SINE B4 -8 157 1 5 1126 194 116 23 0 chr4 71039095 71039138 -84590982 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 5 1126 973 224 48 0 chr4 71039333 71039543 -84590577 + URR1B DNA MER1_type 1 220 -5 5 1126 457 320 26 68 chr4 71039553 71039744 -84590376 + B3A SINE B2 1 183 -15 5 1126 303 28 0 0 chr4 71039745 71039781 -84590339 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1126 363 178 0 0 chr4 71039781 71039882 -84590238 + GA-rich Low_complexity Low_complexity 1 101 0 5 1126 252 0 0 0 chr4 71040783 71040811 -84589309 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1126 375 145 0 0 chr4 71040811 71040880 -84589240 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1126 25 65 0 0 chr4 71040922 71040968 -84589152 + AT_rich Low_complexity Low_complexity 1 46 0 6 1127 23 0 0 0 chr4 71041678 71041701 -84588419 + AT_rich Low_complexity Low_complexity 1 23 0 6 1127 816 177 11 22 chr4 71041799 71041978 -84588142 + Lx4B LINE L1 6866 7042 -16 6 1127 21 36 0 0 chr4 71042002 71042030 -84588090 + AT_rich Low_complexity Low_complexity 1 28 0 6 1127 718 289 127 35 chr4 71042091 71042438 -84587682 + MER57D LTR ERV1 31 409 -2 6 1127 214 339 0 101 chr4 71042533 71042602 -84587518 + ID4_ SINE ID 6 67 -16 6 1127 3157 47 8 0 chr4 71042692 71043074 -84587046 + IAPEY_LTR LTR ERVK 1 385 0 6 1127 215 81 15 75 chr4 71043689 71043756 -84586364 + A-rich Low_complexity Low_complexity 2 64 0 6 1127 224 146 0 59 chr4 71044077 71044128 -84585992 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 7 1127 327 85 0 0 chr4 71044847 71044894 -84585226 + (GAGAA)n Simple_repeat Simple_repeat 1 47 0 7 1127 1112 67 0 48 chr4 71044894 71045082 -84585038 + (GGGGA)n Simple_repeat Simple_repeat 1 179 0 7 1127 549 296 61 12 chr4 71045093 71045257 -84584863 - ORR1D2 LTR MaLR -108 262 91 7 1127 424 268 52 45 chr4 71045262 71045457 -84584663 + RLTR20B2 LTR ERVK 47 264 -313 7 1127 3835 193 65 33 chr4 71045525 71046429 -84583691 + MYSERV16_I-int LTR ERVK 1 933 -1393 7 1127 5961 171 36 13 chr4 71046434 71047664 -84582456 + MYSERV16_I-int LTR ERVK 1067 2324 -2 7 1127 1439 288 55 42 chr4 71047666 71048149 -84581971 + RLTR20B1 LTR ERVK 1 515 -48 7 1127 1177 264 36 47 chr4 71048134 71048520 -84581600 + RLTR20B1 LTR ERVK 160 541 0 7 1127 477 195 11 0 chr4 71048520 71048607 -84581513 - ORR1D2 LTR MaLR -280 90 3 7 1127 8242 32 1 10 chr4 71049723 71050810 -84579310 - L1Md_F2 LINE L1 -7 6575 5498 7 1127 1095 65 0 0 chr4 71051144 71051282 -84578838 + B1_Mm SINE Alu 1 138 -9 7 1127 26 0 0 0 chr4 71051295 71051321 -84578799 + AT_rich Low_complexity Low_complexity 1 26 0 7 1127 618 51 0 0 chr4 71052381 71052459 -84577661 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 7 1127 7252 91 21 7 chr4 71052464 71053243 -84576877 - L1_Mus3 LINE L1 -6 6632 5849 8 1127 2705 61 3 0 chr4 71053243 71053588 -84576532 + ORR1A1 LTR MaLR 1 346 0 8 1127 7252 126 24 8 chr4 71053588 71054221 -84575899 - L1_Mus3 LINE L1 -35 5848 5199 8 1127 1604 131 33 0 chr4 71054217 71054491 -84575629 + L1_Mm LINE L1 2016 2298 -3585 8 1127 518 0 16 0 chr4 71054713 71054775 -84575345 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1127 1100 69 14 0 chr4 71054782 71054926 -84575194 - B1_Mm SINE Alu -1 146 1 8 1127 198 366 29 37 chr4 71055369 71055505 -84574615 + L2 LINE L2 2449 2583 -836 8 1127 964 258 133 15 chr4 71055993 71056324 -84573796 + ORR1D2 LTR MaLR 1 370 0 8 1127 2142 304 48 71 chr4 71056324 71056347 -84573773 + ORR1D2-int LTR MaLR 1 23 -1347 8 1127 315 0 0 0 chr4 71056347 71056382 -84573738 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1127 2142 304 48 71 chr4 71056382 71057363 -84572757 + ORR1D2-int LTR MaLR 24 981 -389 8 1127 926 337 23 8 chr4 71057996 71058256 -84571864 - B4 SINE B4 -28 264 1 8 1127 25 31 0 0 chr4 71058361 71058393 -84571727 + AT_rich Low_complexity Low_complexity 1 32 0 8 1127 26 30 0 0 chr4 71058575 71058608 -84571512 + AT_rich Low_complexity Low_complexity 1 33 0 9 1127 517 275 29 18 chr4 71058847 71059017 -84571103 + MT2A LTR ERVL 322 493 -40 9 1127 182 37 0 36 chr4 71059088 71059116 -84571004 + (TATAA)n Simple_repeat Simple_repeat 2 28 0 9 1127 2328 249 59 7 chr4 71059219 71059778 -84570342 + ORR1D1-int LTR MaLR 783 1370 0 9 1127 1318 217 105 15 chr4 71059781 71060113 -84570007 + ORR1D1 LTR MaLR 5 366 -8 9 1127 552 42 0 0 chr4 71060113 71060184 -84569936 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1127 489 34 0 0 chr4 71061120 71061179 -84568941 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 9 1127 260 278 80 0 chr4 71061189 71061340 -84568780 + L1MD LINE L1 4680 4842 -1304 9 1127 365 321 18 9 chr4 71061411 71061521 -84568599 + Lx8 LINE L1 6525 6635 -838 9 1127 465 200 64 0 chr4 71061641 71061751 -84568369 - Lx2B LINE L1 -117 6883 6767 9 1127 326 85 17 0 chr4 71061751 71061810 -84568310 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 9 1127 945 92 0 0 chr4 71061810 71061941 -84568179 - B1_Mm SINE Alu 0 147 17 1 1127 1087 126 20 30 chr4 71061963 71062160 -84567960 + MusHAL1 LINE L1 488 682 -2030 1 1127 1974 267 118 8 chr4 71062411 71063038 -84567082 + Lx8 LINE L1 6630 7325 -148 9 1127 402 111 24 12 chr4 71063042 71063124 -84566996 + L1Md_F3 LINE L1 6497 6579 -5 1 1127 217 159 23 0 chr4 71063916 71063960 -84566160 + CT-rich Low_complexity Low_complexity 4 48 0 1 1127 449 181 32 63 chr4 71063964 71064153 -84565967 - RMER17C LTR ERVK -133 277 95 1 1127 3248 218 62 15 chr4 71064785 71065460 -84564660 + RMER13A LTR ERVK 1 707 -153 1 1127 487 316 112 28 chr4 71065493 71065672 -84564448 + RMER13A LTR ERVK 667 860 0 1 1127 267 31 0 0 chr4 71065880 71065912 -84564208 + (CAT)n Simple_repeat Simple_repeat 1 32 0 1 1127 290 322 59 26 chr4 71066355 71066508 -84563612 + MER104 DNA Tc2 22 179 -2 1 1127 588 40 0 0 chr4 71066647 71066722 -84563398 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1127 360 0 0 0 chr4 71066722 71066761 -84563359 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1127 333 309 9 18 chr4 71067078 71067190 -84562930 - ID_B1 SINE B4 -31 193 83 1 1127 315 306 23 23 chr4 71067540 71067627 -84562493 - MER20 DNA MER1_type -132 87 1 1 1127 1018 223 14 0 chr4 71067812 71068023 -84562097 + L1_Mur3 LINE L1 5478 5691 -189 1 1127 1357 219 44 13 chr4 71068020 71068335 -84561785 + Lx7 LINE L1 6967 7291 -405 1 1127 236 246 0 0 chr4 71068773 71068830 -84561290 + Lx7 LINE L1 7281 7337 -359 1 1127 315 211 0 0 chr4 71068893 71068969 -84561151 - Lx7 LINE L1 0 7696 7621 1 1127 252 295 26 0 chr4 71069934 71070012 -84560108 + B1F SINE Alu 62 141 -8 1 1127 1492 289 151 20 chr4 71070421 71071285 -84558835 + Lx7 LINE L1 5489 6461 -1235 1 1127 1668 143 0 0 chr4 71071279 71071531 -84558589 - Lx3A LINE L1 -303 6678 6427 1 1127 25027 101 10 36 chr4 71071521 71071571 -84558549 - L1_Mur1 LINE L1 -745 5141 5093 1 1127 1894 65 0 0 chr4 71071571 71071817 -84558303 - L1_Mus2 LINE L1 -4 6562 6317 1 1127 25027 114 18 31 chr4 71071817 71076979 -84553141 - L1_Mur1 LINE L1 -794 5092 3 1 1127 216 0 0 0 chr4 71077417 71077441 -84552679 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1127 1070 366 11 17 chr4 71077478 71078004 -84552116 - Lx8 LINE L1 -704 6769 6247 1 1127 235 324 9 69 chr4 71078012 71078128 -84551992 + RMER12 LTR ERVK 746 854 -468 1 1127 219 69 0 0 chr4 71078135 71078164 -84551956 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1127 1140 316 68 22 chr4 71078196 71078700 -84551420 + Lx7 LINE L1 6825 7351 -345 1 1127 370 197 0 13 chr4 71078786 71078863 -84551257 + HAL1-3A_ME LINE L1 1950 2025 -833 1 1127 360 59 0 0 chr4 71078866 71078917 -84551203 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1127 29 0 0 0 chr4 71078917 71078946 -84551174 + AT_rich Low_complexity Low_complexity 1 29 0 1 1127 381 61 0 5 chr4 71079287 71079356 -84550764 - L1_Mm LINE L1 -831 5049 4982 1 1127 1412 296 97 50 chr4 71079456 71079670 -84550450 - L1_Mus2 LINE L1 -1916 3931 3705 1 1127 942 50 0 0 chr4 71079670 71079790 -84550330 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1127 351 0 0 0 chr4 71079790 71079829 -84550291 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1127 1412 296 97 50 chr4 71079829 71080939 -84549181 - L1_Mus2 LINE L1 -2143 3704 2534 1 1127 2349 178 75 7 chr4 71080939 71081242 -84548878 + RLTR19 LTR ERVK 1 320 -179 1 1127 189 74 0 0 chr4 71081242 71081269 -84548851 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1127 2349 178 75 7 chr4 71081269 71081430 -84548690 + RLTR19 LTR ERVK 321 496 -3 1 1127 30132 118 18 5 chr4 71081430 71082739 -84547381 - L1_Mus2 LINE L1 -555 6011 4810 1 1127 5787 94 74 12 chr4 71082739 71083580 -84546540 + RLTR13B1 LTR ERVK 1 893 0 1 1127 30132 120 12 14 chr4 71083580 71087674 -84542446 - L1_Mus2 LINE L1 -1074 4809 725 1 1127 1892 45 33 0 chr4 71088484 71088727 -84541393 + L1Md_F3 LINE L1 6334 6584 0 1 1127 326 273 86 57 chr4 71089137 71089242 -84540878 + B1F2 SINE Alu 13 120 -29 1 1127 249 299 115 41 chr4 71089242 71089259 -84540861 + ID_B1 SINE B4 94 224 0 1 1127 369 0 0 0 chr4 71089843 71089884 -84540236 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1127 21 0 0 0 chr4 71090604 71090625 -84539495 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 528 89 0 0 chr4 71091333 71091412 -84538708 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1127 666 335 39 31 chr4 71091626 71091986 -84538134 + Lx8 LINE L1 6761 7123 -350 1 1127 1349 292 36 5 chr4 71092002 71092394 -84537726 - MTD LTR MaLR -8 411 8 1 1127 848 237 170 83 chr4 71092410 71092746 -84537374 + ORR1D1 LTR MaLR 3 367 -7 1 1127 323 400 43 13 chr4 71092759 71092992 -84537128 + Lx8 LINE L1 7137 7376 -97 1 1127 432 147 0 0 chr4 71093361 71093436 -84536684 + (GGAGA)n Simple_repeat Simple_repeat 2 76 0 1 1127 200 279 0 0 chr4 71094622 71094690 -84535430 + A-rich Low_complexity Low_complexity 1 68 0 1 1127 35351 46 1 4 chr4 71095284 71100761 -84529359 + L1Md_T LINE L1 30 5589 -297 1 1127 8399 32 4 0 chr4 71100761 71101753 -84528367 + L1Md_T LINE L1 5590 6585 0 1 1127 404 232 73 0 chr4 71102495 71102577 -84527543 + ID_B1 SINE B4 82 169 -55 1 1127 333 268 89 40 chr4 71102577 71102596 -84527524 + B1F1 SINE Alu 1 106 -43 1 1127 252 100 0 0 chr4 71103229 71103269 -84526851 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1127 297 0 0 0 chr4 71103461 71103494 -84526626 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1127 789 140 13 7 chr4 71103530 71103681 -84526439 + CT-rich Low_complexity Low_complexity 2 153 0 1 1127 737 236 7 7 chr4 71105817 71105966 -84524154 - B1_Mur2 SINE Alu 0 149 1 1 1127 273 303 0 0 chr4 71106874 71106950 -84523170 - ID4 SINE ID -1 82 7 1 1127 383 289 29 0 chr4 71106965 71107069 -84523051 - PB1D7 SINE Alu -10 110 4 1 1127 375 276 20 10 chr4 71107162 71107261 -84522859 - RSINE1 SINE B4 -31 134 35 1 1127 1985 249 68 5 chr4 71107272 71107914 -84522206 - L1M4 LINE L1 -956 5190 4508 1 1127 1345 158 5 0 chr4 71108066 71108288 -84521832 - Lx2 LINE L1 0 6997 6775 1 1127 5350 139 34 1 chr4 71108288 71109119 -84521001 - Lx2 LINE L1 -354 6643 5786 1 1127 925 84 63 19 chr4 71109144 71109302 -84520818 + L1_Mus3 LINE L1 6474 6638 0 1 1127 386 58 0 0 chr4 71109314 71109366 -84520754 - L1_Mus4 LINE L1 -271 6365 6314 1 1127 1306 169 0 4 chr4 71109366 71109604 -84520516 + L1_Mus4 LINE L1 6384 6620 -16 1 1127 725 0 12 0 chr4 71109605 71109690 -84520430 + (GAA)n Simple_repeat Simple_repeat 2 87 0 1 1127 720 278 14 8 chr4 71109714 71109909 -84520211 - ORR1D1 LTR MaLR -140 227 44 1 1127 2063 253 100 8 chr4 71109899 71110618 -84519502 - ORR1D1-int LTR MaLR -112 1258 474 1 1127 3878 187 63 16 chr4 71110623 71111432 -84518688 + Lx2B LINE L1 6134 6980 -20 1 1127 1879 222 50 11 chr4 71111437 71111878 -84518242 - ORR1D1-int LTR MaLR -912 458 1 1 1127 1270 198 195 0 chr4 71111878 71112191 -84517929 - ORR1D1 LTR MaLR 0 374 1 1 1127 250 200 30 15 chr4 71112201 71112267 -84517853 - L1M4 LINE L1 -1740 4406 4340 1 1127 1537 62 0 19 chr4 71112460 71112672 -84517448 - L1_Mus1 LINE L1 0 6567 6360 1 1127 612 0 0 0 chr4 71112768 71112836 -84517284 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 1 1127 3340 252 59 45 chr4 71113003 71114548 -84515572 - RMER1A Other Other -2 1064 3 1 1127 246 343 51 40 chr4 71114636 71114812 -84515308 - MIRb SINE MIR -44 224 47 1 1127 300 301 103 0 chr4 71115226 71115372 -84514748 - L1ME1 LINE L1 0 6179 6019 1 1127 304 277 117 8 chr4 71115778 71115898 -84514222 + ORR1B2 LTR MaLR 5 137 -242 1 1127 1073 331 11 29 chr4 71115815 71116195 -84513925 + MT2A LTR ERVL 52 424 -109 1 1127 276 278 19 167 chr4 71116200 71116416 -84513704 + MT2A LTR ERVL 343 526 -7 1 1127 362 277 153 42 chr4 71116424 71116665 -84513455 + L1ME1 LINE L1 5657 5924 -255 1 1127 219 186 0 23 chr4 71116671 71116715 -84513405 + T-rich Low_complexity Low_complexity 4 46 0 1 1127 24 32 0 0 chr4 71116836 71116867 -84513253 + AT_rich Low_complexity Low_complexity 1 31 0 1 1127 380 260 80 0 chr4 71116920 71117020 -84513100 + PB1D10 SINE Alu 10 117 0 1 1127 234 0 0 0 chr4 71118367 71118393 -84511727 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1127 700 296 130 44 chr4 71118459 71119067 -84511053 + L1_Mur3 LINE L1 1508 2174 -3673 1 1127 302 245 38 67 chr4 71119085 71119190 -84510930 + L1_Mur1 LINE L1 2228 2329 -3557 1 1127 241 209 0 0 chr4 71119316 71119359 -84510761 + ORR1B2 LTR MaLR 336 378 0 1 1127 5013 229 31 99 chr4 71119359 71120850 -84509270 + ORR1B2-int LTR MaLR 1 1397 -112 1 1127 867 55 148 0 chr4 71120850 71120978 -84509142 - B1_Mus1 SINE Alu 0 148 2 1 1127 5013 229 31 99 chr4 71120978 71121105 -84509015 + ORR1B2-int LTR MaLR 1398 1509 0 1 1127 1092 228 107 60 chr4 71121105 71121441 -84508679 + ORR1B2 LTR MaLR 1 352 -15 1 1127 316 285 114 40 chr4 71121450 71121869 -84508251 + L1M2 LINE L1 2738 3181 -2962 1 1127 8050 111 27 18 chr4 71121873 71123102 -84507018 + Lx3_Mus LINE L1 5754 6993 -16 1 1127 2225 204 50 38 chr4 71123102 71123677 -84506443 + RLTR25B LTR ERVK 325 1020 -8 1 1127 252 252 80 48 chr4 71123872 71123997 -84506123 + MIRb SINE MIR 136 264 -4 1 1127 351 0 0 0 chr4 71124354 71124393 -84505727 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 1 1127 903 171 41 0 chr4 71124393 71124539 -84505581 - B2_Mm2 SINE B2 -39 156 5 1 1127 396 0 0 0 chr4 71124550 71124594 -84505526 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1127 207 261 0 14 chr4 71125075 71125145 -84504975 + GA-rich Low_complexity Low_complexity 2 70 0 1 1127 264 30 0 0 chr4 71125420 71125453 -84504667 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 1127 207 0 0 0 chr4 71125453 71125476 -84504644 + (GAA)n Simple_repeat Simple_repeat 1 23 0 1 1127 247 274 27 0 chr4 71125754 71125827 -84504293 + Lx6 LINE L1 6820 6894 -566 1 1127 738 139 0 0 chr4 71125827 71125992 -84504128 + (GA)n Simple_repeat Simple_repeat 1 165 0 1 1127 1372 289 133 18 chr4 71125993 71126549 -84503571 + Lx6 LINE L1 6841 7460 0 1 1127 456 277 50 16 chr4 71126668 71126789 -84503331 + B1F SINE Alu 23 147 -2 1 1127 225 351 19 19 chr4 71128923 71129077 -84501043 + GA-rich Low_complexity Low_complexity 2 155 0 1 1127 214 250 23 0 chr4 71129513 71129601 -84500519 + GA-rich Low_complexity Low_complexity 1 90 0 1 1127 191 409 49 35 chr4 71129647 71129789 -84500331 - MIRc SINE MIR -121 147 4 1 1127 3546 162 25 6 chr4 71130426 71131055 -84499065 + RLTR26 LTR ERVK 2 642 0 1 1127 1625 267 8 5 chr4 71131148 71131525 -84498595 + MTC LTR MaLR 44 421 0 1 1127 1115 281 93 50 chr4 71131777 71132755 -84497365 - L1MA8 LINE L1 -255 6036 4977 1 1127 262 288 74 67 chr4 71132756 71132831 -84497289 - L1MA8 LINE L1 -1269 4871 4795 1 1127 539 15 15 0 chr4 71132831 71132899 -84497221 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 1 1127 243 0 0 0 chr4 71132902 71132929 -84497191 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1127 262 288 74 67 chr4 71132929 71132998 -84497122 - L1MA8 LINE L1 -1346 4794 4724 1 1127 421 323 23 31 chr4 71133043 71133171 -84496949 + RSINE1 SINE B4 2 128 -37 2 1127 268 371 86 34 chr4 71133170 71133379 -84496741 - MLT1H LTR MaLR -268 281 62 2 1127 1055 296 44 91 chr4 71133821 71134204 -84495916 + MTE2b LTR MaLR 6 370 -9 2 1127 204 261 0 0 chr4 71135247 71135339 -84494781 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1127 582 138 0 0 chr4 71135386 71135495 -84494625 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1127 401 355 30 6 chr4 71135546 71135713 -84494407 - B4 SINE B4 -27 265 95 2 1127 1082 89 13 0 chr4 71137449 71137607 -84492513 - L1_Mus1 LINE L1 -1 6566 6407 2 1127 922 148 11 0 chr4 71138054 71138230 -84491890 + GA-rich Low_complexity Low_complexity 1 178 0 2 1127 832 270 47 88 chr4 71138447 71138833 -84491287 - ORR1D2 LTR MaLR 0 370 1 2 1127 859 241 69 20 chr4 71138866 71139112 -84491008 - ORR1D2-int LTR MaLR -15 1355 1098 2 1127 265 381 16 25 chr4 71139487 71139608 -84490512 - MER34A LTR ERV1 -443 128 9 2 1127 268 217 29 14 chr4 71139850 71139920 -84490200 + MER5B DNA MER1_type 103 173 -5 2 1127 307 292 57 24 chr4 71141006 71141129 -84488991 + MIRb SINE MIR 74 200 -68 2 1127 387 0 0 0 chr4 71143293 71143336 -84486784 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1127 519 17 0 0 chr4 71143336 71143395 -84486725 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1127 1262 287 35 22 chr4 71143658 71144061 -84486059 + RMER5 LTR ERV1 127 534 0 2 1127 2320 174 95 4 chr4 71144195 71144679 -84485441 - RLTR24 LTR ERV1 -1 528 1 2 1127 438 20 0 0 chr4 71144715 71144766 -84485354 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1127 331 262 94 16 chr4 71147921 71148049 -84482071 + MER2 DNA MER2_type 36 173 -172 2 1127 758 212 154 94 chr4 71149109 71149323 -84480797 - ORR1D1 LTR MaLR -37 337 93 2 1127 405 0 0 0 chr4 71149323 71149368 -84480752 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1127 758 212 154 94 chr4 71149368 71149471 -84480649 - ORR1D1 LTR MaLR -282 92 1 2 1127 558 29 0 0 chr4 71149487 71149555 -84480565 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1127 30 27 0 0 chr4 71149591 71149628 -84480492 + AT_rich Low_complexity Low_complexity 1 37 0 2 1127 333 0 0 0 chr4 71150459 71150496 -84479624 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1127 430 298 8 42 chr4 71150997 71151116 -84479004 - ORR1E LTR MaLR -244 115 1 2 1127 320 355 68 43 chr4 71151157 71151319 -84478801 + Tigger5 DNA MER2_type 1 166 -2240 2 1127 293 311 32 32 chr4 71152214 71152337 -84477783 + MIRb SINE MIR 125 247 -21 2 1127 872 284 167 0 chr4 71152983 71153300 -84476820 - MTEb LTR MaLR -9 370 1 2 1127 463 228 8 0 chr4 71153935 71154058 -84476062 + Lx9 LINE L1 7515 7638 -6 2 1127 1070 84 0 0 chr4 71154427 71154570 -84475550 - B1_Mus2 SINE Alu -2 145 3 2 1127 36243 69 2 2 chr4 71155090 71161267 -84468853 - L1Md_F3 LINE L1 -8 6576 441 2 1127 24 0 0 0 chr4 71161467 71161491 -84468629 + AT_rich Low_complexity Low_complexity 1 24 0 2 1127 1393 67 5 32 chr4 71162173 71162389 -84467731 + L1Md_F2 LINE L1 6368 6577 -5 2 1127 564 219 0 0 chr4 71162828 71162933 -84467187 + Lx9 LINE L1 6780 6884 -760 2 1127 1903 188 28 52 chr4 71162934 71163322 -84466798 - ORR1C2 LTR MaLR 0 384 6 2 1127 1261 238 31 73 chr4 71163326 71163463 -84466657 + Lx9 LINE L1 6884 7005 -639 2 1127 498 17 0 0 chr4 71163463 71163522 -84466598 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 1127 468 51 0 0 chr4 71163522 71163581 -84466539 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1127 1261 238 31 73 chr4 71163581 71163827 -84466293 + Lx9 LINE L1 7006 7251 -393 2 1127 5315 112 10 3 chr4 71164554 71165150 -84464970 + L1VL4 LINE L1 206 809 -5493 2 1127 189 0 0 0 chr4 71165150 71165171 -84464949 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1127 5315 88 1 8 chr4 71165171 71165574 -84464546 + L1VL4 LINE L1 810 1208 -2351 2 1127 1205 304 47 19 chr4 71166881 71167350 -84462770 - RMER5 LTR ERV1 -10 524 43 2 1127 207 0 0 0 chr4 71167967 71167990 -84462130 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1127 1006 168 128 0 chr4 71168500 71168696 -84461424 - URR1A DNA MER1_type -1 225 5 2 1127 365 304 24 16 chr4 71169281 71169408 -84460712 + RMER15 LTR ERVL 432 559 -16 2 1127 2857 30 0 3 chr4 71169614 71169952 -84460168 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 140 30993 24 22 11 chr4 71169952 71173619 -84456501 + IAPEz-int LTR ERVK 8 3717 -2764 2 1128 9049 22 3 1 chr4 71173618 71174652 -84455468 + IAPEz-int LTR ERVK 5446 6481 0 2 1128 2848 33 0 3 chr4 71174652 71174990 -84455130 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1128 1333 188 23 105 chr4 71175179 71175523 -84454597 - RLTR23 LTR ERV1 -8 422 107 2 1128 567 92 33 33 chr4 71175580 71175670 -84454450 - RLTR23 LTR ERV1 -340 90 1 2 1128 516 81 0 13 chr4 71175926 71176001 -84454119 - URR1B DNA MER1_type 0 225 152 2 1128 1212 256 50 60 chr4 71176192 71176758 -84453362 - RMER19C LTR ERVK -105 506 1 2 1128 302 373 47 33 chr4 71176872 71177083 -84453037 + ERVL-E-int LTR ERVL 2916 3129 -2538 2 1128 750 236 162 15 chr4 71177412 71177752 -84452368 - Lx9 LINE L1 -4 7640 7251 2 1128 242 336 58 8 chr4 71178855 71178975 -84451145 - MIRb SINE MIR -114 154 29 2 1128 366 314 33 0 chr4 71180756 71180877 -84449243 - MLT1H LTR MaLR -5 544 420 2 1128 309 26 0 0 chr4 71180903 71180941 -84449179 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1128 192 158 0 0 chr4 71180945 71180983 -84449137 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1128 491 298 126 10 chr4 71184071 71184278 -84445842 + MLT1D LTR MaLR 275 505 0 2 1128 517 290 13 52 chr4 71186618 71186771 -84443349 - RSINE1 SINE B4 -17 148 2 2 1128 1371 75 27 5 chr4 71187088 71187276 -84442844 + B2_Mm2 SINE B2 1 192 -3 2 1128 2836 166 12 0 chr4 71187288 71187889 -84442231 - Lx4B LINE L1 -1045 6013 5399 2 1128 1702 155 40 27 chr4 71187885 71188257 -84441863 + Lx2B LINE L1 6046 6422 -578 2 1128 585 0 0 0 chr4 71188319 71188384 -84441736 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 2 1128 1084 77 0 14 chr4 71188716 71188849 -84441271 + B1_Mm SINE Alu 5 137 -10 2 1128 180 0 0 0 chr4 71188849 71188869 -84441251 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1128 1084 77 0 14 chr4 71188869 71188880 -84441240 + B1_Mm SINE Alu 138 146 -1 2 1128 246 317 100 24 chr4 71188900 71189191 -84440929 - L1ME1 LINE L1 -239 5940 5628 2 1128 262 55 35 53 chr4 71189384 71189441 -84440679 + (TTTTTG)n Simple_repeat Simple_repeat 2 57 0 2 1128 425 193 213 32 chr4 71189894 71190049 -84440071 - Lx9 LINE L1 -552 7092 6910 2 1128 3423 129 19 8 chr4 71190076 71190590 -84439530 + L1_Mus2 LINE L1 219 738 -5900 2 1128 29419 113 12 4 chr4 71190589 71192691 -84437429 + L1_Mus2 LINE L1 1016 3141 -2742 2 1128 294 29 0 0 chr4 71192691 71192726 -84437394 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1128 29419 121 14 4 chr4 71192726 71194295 -84435825 + L1_Mus2 LINE L1 3142 4732 -1151 2 1128 234 0 0 0 chr4 71194295 71194321 -84435799 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1128 29419 121 14 4 chr4 71194321 71194743 -84435377 + L1_Mus2 LINE L1 4733 5149 -734 2 1128 282 29 0 0 chr4 71194743 71194778 -84435342 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1128 29419 98 14 2 chr4 71194778 71196184 -84433936 + L1_Mus2 LINE L1 5150 6566 0 2 1128 636 14 0 0 chr4 71196199 71196272 -84433848 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 2 1128 1158 60 0 0 chr4 71196292 71196443 -84433677 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 2 1128 331 276 132 24 chr4 71197867 71198034 -84432086 + RMER15 LTR ERVL 335 519 -56 2 1128 505 305 73 20 chr4 71198542 71198746 -84431374 - RMER15-int LTR ERVL -3648 1351 1137 2 1128 668 113 161 0 chr4 71198831 71198955 -84431165 - L1Md_F2 LINE L1 -4 6578 6435 2 1128 546 292 0 13 chr4 71199104 71199253 -84430867 - RMER15 LTR ERVL -150 425 279 2 1128 1270 297 94 20 chr4 71199460 71199512 -84430608 - RMER15-int LTR ERVL -229 4770 4721 2 1128 564 15 0 0 chr4 71199512 71199577 -84430543 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1128 1270 297 94 20 chr4 71199577 71200067 -84430053 - RMER15-int LTR ERVL -279 4720 4189 2 1128 690 319 209 26 chr4 71200575 71201106 -84429014 - RMER15-int LTR ERVL -3377 1622 995 2 1128 987 109 0 0 chr4 71201107 71201245 -84428875 + B1_Mm SINE Alu 1 138 -9 2 1128 235 0 57 0 chr4 71201263 71201298 -84428822 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 2 1128 448 295 0 8 chr4 71201298 71201428 -84428692 - RMER15-int LTR ERVL -3996 1003 875 2 1128 263 52 69 0 chr4 71201484 71201542 -84428578 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 1128 714 292 84 4 chr4 71201608 71201883 -84428237 - RMER15-int LTR ERVL -4191 808 512 2 1128 533 110 0 0 chr4 71201898 71201971 -84428149 - L1_Mus1 LINE L1 -324 6243 6171 2 1128 4079 83 2 9 chr4 71201971 71202529 -84427591 + L1_Mus1 LINE L1 6013 6566 -1 2 1128 186 43 0 0 chr4 71202707 71202730 -84427390 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1128 192 77 0 0 chr4 71202762 71202788 -84427332 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1128 532 282 25 60 chr4 71203245 71203445 -84426675 - RMER15 LTR ERVL -99 476 284 2 1128 1434 362 40 16 chr4 71203693 71204459 -84425661 - RMER15-int LTR ERVL -4066 933 149 2 1128 2337 262 33 25 chr4 71204557 71205202 -84424918 + RodERV21-int LTR ERV1 2067 2716 -2275 2 1128 261 0 0 0 chr4 71205229 71205258 -84424862 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1128 465 50 0 0 chr4 71205309 71205369 -84424751 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1128 776 272 41 16 chr4 71205626 71205869 -84424251 + RLTR42-int LTR ERVK 1105 1353 -4169 2 1128 273 258 10 31 chr4 71205876 71205972 -84424148 + RLTR19-int LTR ERVK 3189 3282 -2855 2 1128 1181 272 57 63 chr4 71205991 71206591 -84423529 + RLTR19-int LTR ERVK 3436 4031 -2106 2 1128 692 65 9 0 chr4 71206684 71206791 -84423329 + (GTTTG)n Simple_repeat Simple_repeat 2 109 0 2 1128 191 14 25 112 chr4 71206794 71206874 -84423246 + T-rich Low_complexity Low_complexity 1 73 0 2 1128 1078 96 0 0 chr4 71206877 71207023 -84423097 - B1_Mm SINE Alu 0 147 2 2 1128 558 280 47 90 chr4 71207074 71207329 -84422791 + RLTR19-int LTR ERVK 4028 4271 -1866 2 1128 1527 243 9 23 chr4 71207552 71207803 -84422317 + RodERV21-int LTR ERV1 4443 4695 -296 2 1128 2599 58 61 0 chr4 71207803 71208129 -84421991 + ORR1A1 LTR MaLR 1 346 0 2 1128 1527 243 9 23 chr4 71208129 71208223 -84421897 + RodERV21-int LTR ERV1 4696 4783 -208 2 1128 280 342 0 0 chr4 71208246 71208319 -84421801 + RMER4B LTR ERVK 345 417 -168 2 1128 266 313 30 10 chr4 71208600 71208700 -84421420 - RMER15-int LTR ERVL -4897 102 1 2 1128 562 300 34 116 chr4 71208717 71208985 -84421135 - RMER15 LTR ERVL -16 559 314 2 1128 288 371 59 93 chr4 71210005 71210275 -84419845 - LTR33A LTR ERVL -123 397 137 2 1128 21 36 0 0 chr4 71210596 71210624 -84419496 + AT_rich Low_complexity Low_complexity 1 28 0 2 1128 329 240 67 9 chr4 71210719 71210824 -84419296 + L1M2 LINE L1 5491 5601 -690 2 1128 3162 297 32 27 chr4 71210916 71212008 -84418112 + Lx8 LINE L1 6376 7473 0 2 1128 837 29 0 0 chr4 71212405 71212509 -84417611 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 1128 914 345 52 33 chr4 71213207 71213690 -84416430 - MLT1D LTR MaLR 0 505 7 2 1128 24 0 0 0 chr4 71215044 71215068 -84415052 + AT_rich Low_complexity Low_complexity 1 24 0 2 1128 315 245 85 0 chr4 71215464 71215558 -84414562 - L1M2 LINE L1 -3302 2844 2743 2 1128 29 60 0 0 chr4 71215663 71215713 -84414407 + AT_rich Low_complexity Low_complexity 1 50 0 2 1128 345 297 0 0 chr4 71216578 71216669 -84413451 + PB1D10 SINE Alu 27 117 0 2 1128 5616 96 23 1 chr4 71216811 71218286 -84411834 - L1VL2 LINE L1 -1789 1826 316 2 1128 1363 61 11 0 chr4 71218305 71218486 -84411634 + L1_Mus1 LINE L1 6384 6566 -1 3 1128 214 302 0 16 chr4 71218886 71218950 -84411170 + CT-rich Low_complexity Low_complexity 3 65 0 3 1128 3589 187 72 42 chr4 71219154 71219970 -84410150 + RLTR25A LTR ERVK 1 841 -262 3 1128 256 333 55 55 chr4 71220004 71220185 -84409935 - RLTR25B LTR ERVK 0 1103 923 3 1128 415 339 50 65 chr4 71220904 71221226 -84408894 - RLTR25B LTR ERVK -706 322 6 3 1128 471 185 12 0 chr4 71221247 71221328 -84408792 + RLTR25A LTR ERVK 1022 1103 0 3 1128 371 189 16 0 chr4 71221492 71221578 -84408542 + ORR1B2 LTR MaLR 280 370 -8 3 1128 21 57 0 0 chr4 71221606 71221641 -84408479 + AT_rich Low_complexity Low_complexity 1 35 0 3 1128 3332 139 18 14 chr4 71221820 71222375 -84407745 - RLTR31B_Mm LTR ERVK 0 557 1 3 1128 357 214 0 0 chr4 71222440 71222543 -84407577 + (CA)n Simple_repeat Simple_repeat 1 103 0 3 1128 274 355 45 6 chr4 71223445 71223601 -84406519 + MIR SINE MIR 65 226 -36 3 1128 17629 173 49 96 chr4 71223726 71224902 -84405218 + L1_Mus3 LINE L1 1242 2453 -3430 3 1128 222 62 0 0 chr4 71224902 71224934 -84405186 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1128 17629 173 49 96 chr4 71224934 71226369 -84403751 + L1_Mus3 LINE L1 2454 3774 -2109 3 1128 4148 42 0 2 chr4 71226369 71226871 -84403249 - L1Md_T LINE L1 0 6582 6082 3 1128 17629 151 38 69 chr4 71226871 71229884 -84400236 + L1_Mus3 LINE L1 3775 6637 -1 3 1128 369 0 0 0 chr4 71230385 71230426 -84399694 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1128 217 324 84 0 chr4 71230563 71230634 -84399486 - ID4 SINE ID -1 82 6 3 1128 23 68 0 0 chr4 71231047 71231091 -84399029 + AT_rich Low_complexity Low_complexity 1 44 0 3 1128 444 323 15 0 chr4 71232205 71232335 -84397785 + B1_Mur1 SINE Alu 5 136 -13 3 1128 558 0 0 0 chr4 71232339 71232401 -84397719 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1128 423 0 0 0 chr4 71232680 71232727 -84397393 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1128 468 0 0 0 chr4 71232727 71232778 -84397342 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1128 469 340 48 7 chr4 71232874 71233019 -84397101 - RSINE1 SINE B4 -13 152 2 3 1128 549 64 0 0 chr4 71233062 71233140 -84396980 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1128 356 158 0 13 chr4 71233271 71233348 -84396772 + CT-rich Low_complexity Low_complexity 3 78 0 3 1128 537 335 54 29 chr4 71233350 71233630 -84396490 - Lx8 LINE L1 -60 7413 7127 3 1128 715 294 230 14 chr4 71233611 71234566 -84395554 - L1M2 LINE L1 -323 5557 4418 3 1128 2606 196 29 14 chr4 71236277 71236769 -84393351 + RLTR19 LTR ERVK 1 499 0 3 1128 381 75 0 0 chr4 71236793 71236846 -84393274 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 3 1128 390 222 82 108 chr4 71236909 71237072 -84393048 + ORR1C1 LTR MaLR 2 138 -240 3 1128 234 62 0 0 chr4 71237072 71237104 -84393016 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1128 265 237 181 35 chr4 71237104 71237169 -84392951 + ORR1C1 LTR MaLR 133 217 -150 3 1128 1980 212 8 5 chr4 71237169 71237549 -84392571 - Lx4B LINE L1 -70 6988 6608 3 1128 5320 136 34 4 chr4 71237545 71238461 -84391659 - L1_Mur2 LINE L1 -445 5432 4490 3 1128 7795 175 18 9 chr4 71238459 71239898 -84390222 + Lx2B LINE L1 5541 7000 0 3 1128 4049 221 49 16 chr4 71241126 71242077 -84388043 - Lx9 LINE L1 -88 7556 6574 3 1128 256 252 24 73 chr4 71242179 71242303 -84387817 - L1MEf LINE L1 -4961 1239 1122 3 1128 222 105 0 0 chr4 71242442 71242480 -84387640 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1128 905 99 0 107 chr4 71242488 71242647 -84387473 - B1_Mus1 SINE Alu 0 148 7 3 1128 235 224 31 75 chr4 71242546 71242705 -84387415 - ORR1B1-int LTR MaLR -756 753 602 3 1128 22 0 0 0 chr4 71243177 71243199 -84386921 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 995 104 0 0 chr4 71245163 71245298 -84384822 + B1_Mus1 SINE Alu 1 135 -13 3 1128 293 140 18 0 chr4 71245367 71245424 -84384696 + (CTGTG)n Simple_repeat Simple_repeat 2 59 0 3 1128 307 358 94 42 chr4 71245424 71245637 -84384483 + Kanga1c DNA Tc2 453 676 -53 3 1128 569 276 106 38 chr4 71246391 71246655 -84383465 - L1M3 LINE L1 -380 5800 5519 3 1128 763 39 19 0 chr4 71246669 71246772 -84383348 + (GA)n Simple_repeat Simple_repeat 1 105 0 3 1128 186 43 0 0 chr4 71247621 71247644 -84382476 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1128 1204 160 5 0 chr4 71247654 71247854 -84382266 - L1_Mur2 LINE L1 -672 5205 5005 3 1128 7432 46 4 3 chr4 71247859 71248775 -84381345 - L1Md_F2 LINE L1 -1 6581 5665 3 1128 1507 158 0 8 chr4 71248774 71249036 -84381084 - L1_Mm LINE L1 -858 5025 4766 3 1128 212 310 28 0 chr4 71249784 71249855 -84380265 + ID2 SINE ID 1 73 -10 3 1128 216 0 0 0 chr4 71250492 71250516 -84379604 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1128 2520 198 18 45 chr4 71250516 71251067 -84379053 - Lx4B LINE L1 0 7058 6523 3 1128 215 213 33 0 chr4 71251661 71251722 -84378398 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1128 1065 251 76 29 chr4 71251748 71252092 -84378028 - L1_Rod LINE L1 -3369 2478 2119 3 1128 33528 75 9 9 chr4 71252214 71258586 -84371534 - L1Md_F2 LINE L1 -3 6579 212 3 1128 301 305 14 92 chr4 71259253 71259394 -84370726 - L2c LINE L2 0 3387 3258 3 1128 316 280 87 29 chr4 71259625 71259798 -84370322 + L1MA4A LINE L1 5742 5924 -379 3 1128 509 298 18 72 chr4 71260017 71260238 -84369882 + Lx8 LINE L1 6202 6410 -1063 3 1128 381 351 0 8 chr4 71260239 71260371 -84369749 + Lx8 LINE L1 6989 7119 -354 3 1128 946 235 85 19 chr4 71260492 71260752 -84369368 - Lx5 LINE L1 0 7050 6774 3 1128 270 0 0 0 chr4 71260877 71260907 -84369213 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1128 225 188 0 0 chr4 71262284 71262332 -84367788 + A-rich Low_complexity Low_complexity 1 48 0 3 1128 866 120 0 14 chr4 71262406 71262550 -84367570 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 3 1128 30 27 0 0 chr4 71262685 71262722 -84367398 + AT_rich Low_complexity Low_complexity 1 37 0 3 1128 1266 322 92 65 chr4 71262722 71263542 -84366578 - Lx8 LINE L1 -5 7468 6627 3 1128 1381 216 148 6 chr4 71263542 71263887 -84366233 + ORR1B1 LTR MaLR 1 394 0 3 1128 4378 184 98 130 chr4 71263887 71264282 -84365838 + ORR1B1-int LTR MaLR 1 372 -1591 3 1128 1165 48 7 0 chr4 71264282 71264427 -84365693 - B1_Mm SINE Alu -1 146 1 3 1128 4378 184 98 130 chr4 71264427 71265388 -84364732 + ORR1B1-int LTR MaLR 373 1314 -649 3 1128 2530 152 5 0 chr4 71265396 71265804 -84364316 - Lx2 LINE L1 -54 5829 5420 3 1128 4397 136 31 1 chr4 71265802 71266503 -84363617 + Lx2 LINE L1 5827 6548 -449 3 1128 1244 187 129 1 chr4 71266503 71266834 -84363286 + ORR1B1-int LTR MaLR 1016 1362 -147 3 1128 2985 189 95 13 chr4 71266841 71267464 -84362656 - RLTR33 LTR ERVK 0 678 5 3 1128 1096 128 5 27 chr4 71267703 71267887 -84362233 + ORR1B1-int LTR MaLR 1784 1963 0 3 1128 1871 162 103 6 chr4 71267887 71268246 -84361874 + ORR1B1 LTR MaLR 1 394 0 3 1128 819 349 41 7 chr4 71268246 71268659 -84361461 - Lx8 LINE L1 -842 6631 6205 3 1128 375 83 0 0 chr4 71268674 71268734 -84361386 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1128 574 306 20 28 chr4 71268953 71269079 -84361041 - Lx8 LINE L1 -1 5846 5720 3 1128 1260 269 52 22 chr4 71269079 71269486 -84360634 + MTD LTR MaLR 1 419 0 3 1128 574 306 20 28 chr4 71269486 71269608 -84360512 - Lx8 LINE L1 -128 5719 5600 3 1128 249 206 14 56 chr4 71269604 71269676 -84360444 - L1M2 LINE L1 -1455 4685 4617 3 1128 2716 89 0 0 chr4 71269708 71270074 -84360046 - L1_Mus4 LINE L1 -466 6170 5805 3 1128 296 184 0 0 chr4 71270063 71270112 -84360008 + L1VL4 LINE L1 90 138 -6164 3 1128 1286 215 65 43 chr4 71270127 71270526 -84359594 + RMER17C LTR ERVK 1 408 -2 3 1128 372 230 113 38 chr4 71270548 71270733 -84359387 - L1M2 LINE L1 -1506 4637 4439 3 1128 1609 274 75 30 chr4 71270801 71271656 -84358464 - L1_Mur3 LINE L1 -1942 3938 3046 3 1128 457 317 19 31 chr4 71272117 71272374 -84357746 - L1MC LINE L1 -2285 5597 5344 3 1128 392 238 8 0 chr4 71272413 71272539 -84357581 + (TG)n Simple_repeat Simple_repeat 2 128 0 3 1128 703 286 100 17 chr4 71273722 71273971 -84356149 + B4 SINE B4 1 262 -30 3 1128 222 328 15 0 chr4 71274129 71274196 -84355924 + RSINE1 SINE B4 76 143 -22 3 1128 519 17 0 0 chr4 71274221 71274281 -84355839 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1128 248 259 35 12 chr4 71274904 71274990 -84355130 + MER68 LTR ERVL 390 477 -86 3 1128 21 36 0 0 chr4 71275264 71275292 -84354828 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 937 306 95 19 chr4 71275915 71276325 -84353795 + MT2A LTR ERVL 1 441 -92 3 1128 3902 259 45 35 chr4 71276699 71277782 -84352338 + RMER1A Other Other 18 1020 -10 3 1128 317 56 56 0 chr4 71277782 71277836 -84352284 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 3 1128 217 367 0 0 chr4 71278473 71278533 -84351587 + ID4_ SINE ID 1 60 -23 3 1128 2253 66 25 9 chr4 71278955 71279279 -84350841 + IAPLTR4_I LTR ERVK 1 365 -2 3 1128 4235 101 71 15 chr4 71279279 71280110 -84350010 + IAPLTR4_I LTR ERVK 2 1182 -288 3 1128 396 168 44 18 chr4 71280110 71280231 -84349889 + B1_Mus1 SINE Alu 1 127 -20 3 1128 1445 56 6 0 chr4 71280231 71280411 -84349709 + IAPEY3-int LTR ERVK 2317 2497 -5183 3 1128 8033 221 29 40 chr4 71280408 71282324 -84347796 + IAPLTR3-int LTR ERVK 4906 6801 -20 3 1128 2375 46 26 7 chr4 71282324 71282633 -84347487 + IAPLTR2b LTR ERVK 1 315 -12 3 1128 22 0 0 0 chr4 71283023 71283045 -84347075 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 570 340 66 63 chr4 71283228 71283545 -84346575 - ORR1E LTR MaLR -41 318 1 3 1128 225 218 54 18 chr4 71283818 71283874 -84346246 + LTR16A LTR ERVL 80 137 -314 3 1128 231 255 0 0 chr4 71283997 71284044 -84346076 + MTE-int LTR MaLR 904 950 -630 3 1128 942 28 0 0 chr4 71284058 71284165 -84345955 + L1Md_T LINE L1 5480 5586 -297 3 1128 8368 34 0 1 chr4 71284165 71285162 -84344958 + L1Md_T LINE L1 5587 6582 0 3 1128 231 255 0 0 chr4 71285163 71285210 -84344910 + MTE-int LTR MaLR 904 950 -630 3 1128 38 0 0 20 chr4 71285235 71285265 -84344855 + AT_rich Low_complexity Low_complexity 1 30 0 3 1128 198 0 0 0 chr4 71285265 71285287 -84344833 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 1128 38 0 0 20 chr4 71285287 71285305 -84344815 + AT_rich Low_complexity Low_complexity 1 18 0 3 1128 1006 103 0 13 chr4 71286095 71286252 -84343868 + L1Md_F2 LINE L1 6416 6570 -12 3 1128 380 297 15 15 chr4 71288664 71288794 -84341326 + Lx9 LINE L1 7287 7416 -228 3 1128 608 327 128 30 chr4 71289519 71289784 -84340336 - B4A SINE B4 -1 291 1 3 1128 26 30 0 0 chr4 71291783 71291816 -84338304 + AT_rich Low_complexity Low_complexity 1 33 0 3 1128 27 29 0 0 chr4 71291953 71291987 -84338133 + AT_rich Low_complexity Low_complexity 1 34 0 3 1128 304 323 94 53 chr4 71292475 71292645 -84337475 - MLT1A LTR MaLR -197 177 1 4 1128 4535 47 7 0 chr4 71292787 71293344 -84336776 + L1Md_F2 LINE L1 5941 6501 -81 4 1128 297 254 69 31 chr4 71293388 71293518 -84336602 - L1M5 LINE L1 -421 5758 5624 4 1128 227 253 90 39 chr4 71293635 71293713 -84336407 - U17 snRNA snRNA -8 199 118 4 1128 334 294 152 62 chr4 71293739 71293949 -84336171 - L1MD LINE L1 -864 5495 5267 4 1128 24 0 0 0 chr4 71293995 71294019 -84336101 + AT_rich Low_complexity Low_complexity 1 24 0 4 1128 24 53 0 0 chr4 71294103 71294141 -84335979 + AT_rich Low_complexity Low_complexity 1 38 0 4 1128 769 285 98 3 chr4 71294153 71294470 -84335650 - Lx9 LINE L1 -46 7598 7252 4 1128 3645 206 56 18 chr4 71294492 71295924 -84334196 - Lx2B LINE L1 -357 7287 6024 4 1128 749 242 142 46 chr4 71295924 71296297 -84333823 - RLTR9E LTR ERVK 0 409 1 4 1128 419 110 25 76 chr4 71296299 71296378 -84333742 - ETnERV2-int LTR ERVK -3 7403 7329 4 1128 478 254 232 41 chr4 71296378 71296723 -84333397 - RLTR13D6 LTR ERVK -365 537 127 4 1128 19479 199 39 35 chr4 71296724 71299257 -84330863 - ETnERV2-int LTR ERVK -237 7169 4243 4 1128 189 246 197 15 chr4 71299257 71299323 -84330797 + L4 LINE RTE 978 1055 -974 4 1128 19479 199 39 35 chr4 71299323 71301900 -84328220 - ETnERV2-int LTR ERVK -237 4242 1263 4 1128 396 256 164 8 chr4 71301900 71301952 -84328168 - Lx7 LINE L1 -1450 6246 6196 4 1128 387 0 0 0 chr4 71301952 71301995 -84328125 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1128 396 256 164 8 chr4 71301995 71302076 -84328044 - Lx7 LINE L1 -1501 6195 6093 4 1128 3315 220 30 29 chr4 71302236 71303114 -84327006 + L1_Rod LINE L1 4733 5611 -236 4 17 1555 199 16 91 chr4 71303114 71303500 -84326620 - ORR1B1 LTR MaLR -2 392 36 4 1129 580 138 20 0 chr4 71303529 71303681 -84326439 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 4 1129 1813 155 46 0 chr4 71303775 71304079 -84326041 - ORR1A2 LTR MaLR -9 318 1 4 1129 515 304 82 42 chr4 71304082 71304460 -84325660 + L1_Rod LINE L1 4811 5203 -644 4 1129 441 0 0 0 chr4 71304648 71304697 -84325423 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1129 417 39 0 0 chr4 71304697 71304747 -84325373 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1129 2647 305 70 49 chr4 71304761 71305997 -84324123 + Lx8 LINE L1 6210 7471 -2 4 1129 249 293 207 15 chr4 71306158 71306501 -84323619 - L1MD LINE L1 -2210 3936 3528 4 1129 1747 271 38 99 chr4 71306909 71308008 -84322112 + RMER1A Other Other 23 917 -113 4 1129 237 33 0 0 chr4 71308008 71308038 -84322082 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1129 1747 243 69 53 chr4 71308038 71308140 -84321980 + RMER1A Other Other 918 1027 -3 4 1129 238 286 140 11 chr4 71308415 71308680 -84321440 - L1MDa LINE L1 -2991 3546 3248 4 1129 21 36 0 0 chr4 71308693 71308721 -84321399 + AT_rich Low_complexity Low_complexity 1 28 0 4 1129 5986 56 9 3 chr4 71308829 71309702 -84320418 - L1Md_F2 LINE L1 -235 6347 5469 4 1129 1732 38 0 5 chr4 71309702 71309915 -84320205 + L1Md_F2 LINE L1 6361 6572 -10 4 1129 781 171 0 14 chr4 71309915 71310041 -84320079 + L1_Mur3 LINE L1 2331 2456 -3424 4 1129 432 0 0 0 chr4 71310041 71310089 -84320031 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1129 781 171 0 14 chr4 71310089 71310110 -84320010 + L1_Mur3 LINE L1 2457 2476 -3404 4 1129 362 287 57 28 chr4 71310382 71310637 -84319483 - L1MDa LINE L1 -3799 2738 2479 4 1129 2231 311 72 16 chr4 71310899 71311746 -84318374 - Lx8 LINE L1 -141 7332 6439 4 1129 384 139 244 0 chr4 71311749 71311835 -84318285 - MT2A LTR ERVL 0 533 427 4 1129 532 280 81 78 chr4 71312496 71312906 -84317214 - Lx8 LINE L1 -563 5728 5331 4 1129 1982 180 68 12 chr4 71312906 71313305 -84316815 - MTC LTR MaLR 0 421 1 4 1129 416 279 82 80 chr4 71313305 71313327 -84316793 - Lx8 LINE L1 -961 5330 5315 4 1129 250 288 132 29 chr4 71316655 71316791 -84313329 + MER77 LTR ERVL 6 155 -452 4 1129 395 346 30 30 chr4 71317306 71317470 -84312650 - RSINE1 SINE B4 0 165 2 4 1129 216 0 0 0 chr4 71317896 71317920 -84312200 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1129 467 335 17 72 chr4 71318015 71318195 -84311925 - MER77 LTR ERVL -437 170 1 4 1129 585 188 8 8 chr4 71319086 71319215 -84310905 - L1M4c LINE L1 -4129 2255 2127 4 1129 28 79 0 0 chr4 71319476 71319539 -84310581 + AT_rich Low_complexity Low_complexity 1 63 0 4 1129 314 352 27 54 chr4 71319969 71320155 -84309965 - MER102a DNA MER1_type -76 254 74 4 1129 426 276 54 134 chr4 71320162 71320266 -84309854 + L1MB2 LINE L1 21 131 -6253 4 1129 526 318 88 5 chr4 71320266 71320459 -84309661 - B3 SINE B2 -6 210 2 4 1129 426 276 54 134 chr4 71320459 71320630 -84309490 + L1MB2 LINE L1 132 274 -6110 4 1129 930 154 0 19 chr4 71320703 71320862 -84309258 - ORR1D1 LTR MaLR -214 160 5 4 1129 237 326 10 20 chr4 71320903 71321003 -84309117 + L1MB2 LINE L1 372 470 -5914 4 1129 912 272 102 8 chr4 71321476 71321850 -84308270 + L1MB2 LINE L1 1958 2366 -4018 4 1129 286 133 0 0 chr4 71321869 71321914 -84308206 + L1_Mur1 LINE L1 713 757 -6227 4 1129 6355 152 70 21 chr4 71322046 71323945 -84306175 + L1_Mur1 LINE L1 674 2654 -3232 4 1129 983 117 0 25 chr4 71323943 71324027 -84306093 + L1_Mur1 LINE L1 4377 4460 -1426 4 1129 819 109 101 0 chr4 71324027 71324165 -84305955 + L1Md_F2 LINE L1 6430 6581 -1 4 1129 983 117 0 25 chr4 71324165 71324238 -84305882 + L1_Mur1 LINE L1 4461 4530 -1356 4 1129 494 115 20 50 chr4 71324238 71324339 -84305781 + Lx3C LINE L1 6879 6976 0 4 1129 371 217 50 42 chr4 71324349 71324469 -84305651 + L1MB2 LINE L1 2357 2477 -3907 4 1129 23 0 0 0 chr4 71324469 71324492 -84305628 + AT_rich Low_complexity Low_complexity 1 23 0 4 1129 236 263 0 0 chr4 71324631 71324688 -84305432 - B3A SINE B2 -138 60 4 4 1129 2752 109 7 15 chr4 71324763 71325173 -84304947 - MTB_Mm LTR MaLR 0 407 1 4 1129 31 58 0 0 chr4 71325202 71325254 -84304866 + AT_rich Low_complexity Low_complexity 1 52 0 4 1129 1667 279 181 37 chr4 71325254 71327123 -84302997 + L1MB2 LINE L1 3418 5555 -821 4 1129 5527 33 0 10 chr4 71327128 71327799 -84302321 + L1Md_F3 LINE L1 5918 6581 -3 4 1129 197 86 0 54 chr4 71327804 71327841 -84302279 + (TAAAAA)n Simple_repeat Simple_repeat 4 38 0 4 1129 195 129 0 0 chr4 71327870 71327901 -84302219 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1129 478 248 8 8 chr4 71328284 71328414 -84301706 + L1MB2 LINE L1 6019 6148 -259 4 1129 27 49 0 0 chr4 71328597 71328638 -84301482 + AT_rich Low_complexity Low_complexity 1 41 0 4 1129 869 252 181 78 chr4 71328712 71329254 -84300866 + MT2B LTR ERVL 2 599 -2 4 1129 206 128 0 41 chr4 71329292 71329341 -84300779 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 1129 180 0 0 0 chr4 71329348 71329368 -84300752 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1129 288 143 32 0 chr4 71329455 71329518 -84300602 + L1_Mus3 LINE L1 6555 6619 -19 4 1129 758 88 9 0 chr4 71330798 71330912 -84299208 + L1_Mus2 LINE L1 6452 6566 0 4 1129 530 125 0 30 chr4 71330919 71330982 -84299138 + polypurine Low_complexity Low_complexity 2 64 0 4 1129 1434 45 0 0 chr4 71330982 71331160 -84298960 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 1129 530 125 0 30 chr4 71331160 71331195 -84298925 + polypurine Low_complexity Low_complexity 65 97 0 4 1129 921 218 0 0 chr4 71331196 71331370 -84298750 + MTC LTR MaLR 196 369 -52 4 1129 576 164 52 7 chr4 71331384 71331495 -84298625 - Lx9 LINE L1 -8 7636 7524 4 1129 504 45 0 0 chr4 71331495 71331562 -84298558 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1129 576 164 52 7 chr4 71331562 71331603 -84298517 - Lx9 LINE L1 -121 7523 7478 4 1129 615 249 26 63 chr4 71331640 71331829 -84298291 - Lx9 LINE L1 -317 7327 7146 4 1129 819 301 91 31 chr4 71331928 71332281 -84297839 + MLT1B LTR MaLR 17 390 0 4 1129 256 256 122 0 chr4 71332525 71332615 -84297505 - MLT1A1 LTR MaLR 0 408 308 4 1129 217 281 16 0 chr4 71332863 71332927 -84297193 - MIR3 SINE MIR -36 172 108 4 1129 423 0 0 0 chr4 71333580 71333627 -84296493 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1129 750 197 15 0 chr4 71333628 71333760 -84296360 - B1_Mur2 SINE Alu -6 143 10 4 1129 326 319 53 92 chr4 71333760 71333779 -84296341 - B4 SINE B4 -71 220 76 4 1129 196 423 65 7 chr4 71334864 71335002 -84295118 - MIRc SINE MIR -107 161 16 4 1129 22 0 0 0 chr4 71336834 71336856 -84293264 + AT_rich Low_complexity Low_complexity 1 22 0 4 1129 947 58 0 17 chr4 71336863 71337043 -84293077 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 4 1129 706 189 35 125 chr4 71338264 71338464 -84291656 + MT2B LTR ERVL 348 529 -72 4 1129 357 154 0 0 chr4 71339989 71340080 -84290040 + T-rich Low_complexity Low_complexity 1 91 0 4 1129 189 0 0 0 chr4 71340081 71340102 -84290018 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1129 225 94 0 0 chr4 71340339 71340371 -84289749 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1129 227 320 0 0 chr4 71340724 71340799 -84289321 + (CCCCAG)n Simple_repeat Simple_repeat 2 76 0 4 1129 5774 169 13 16 chr4 71341184 71343052 -84287068 + Lx LINE L1 4784 6647 -7 4 1129 285 244 22 11 chr4 71343054 71343145 -84286975 - Lx3C LINE L1 -4 6972 6881 4 1129 588 271 81 91 chr4 71343292 71343801 -84286319 - MYSERV6-int LTR ERVK -288 8671 8254 4 1129 354 145 0 80 chr4 71345724 71345799 -84284321 - RMER10A LTR ERVL 0 442 374 4 1129 1654 239 9 182 chr4 71345801 71346465 -84283655 - RMER19C LTR ERVK -4 607 59 4 1129 249 377 26 13 chr4 71347795 71347873 -84282247 + ID SINE ID 2 80 -144 4 1129 312 119 0 0 chr4 71347894 71347953 -84282167 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1129 210 171 24 0 chr4 71347990 71348031 -84282089 + GA-rich Low_complexity Low_complexity 5 46 0 4 1129 442 273 29 29 chr4 71348899 71349035 -84281085 + MTD LTR MaLR 1 136 -283 4 1129 381 220 44 0 chr4 71349034 71349125 -84280995 + MTD LTR MaLR 311 405 -14 4 1129 303 341 247 11 chr4 71349243 71349522 -84280598 + LTR82B Low_complexity ERVL 485 829 -1 4 1129 361 224 0 50 chr4 71349852 71349932 -84280188 + PB1D9 SINE Alu 43 118 -2 4 1129 598 233 58 29 chr4 71349939 71350076 -84280044 + B1_Mur2 SINE Alu 1 141 -8 4 1129 762 121 19 0 chr4 71350781 71350938 -84279182 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 4 1129 802 315 117 38 chr4 71350950 71351293 -84278827 - ORR1E LTR MaLR 0 370 1 4 1129 320 292 199 28 chr4 71351293 71351457 -84278663 - MLT2B1 LTR ERVL -44 523 330 4 1129 296 235 49 0 chr4 71351468 71351570 -84278550 - L1M5 LINE L1 -329 5833 5727 4 1129 685 265 68 36 chr4 71351695 71351707 -84278413 - B3 SINE B2 -16 200 192 4 1129 243 0 0 0 chr4 71351707 71351734 -84278386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1129 758 265 68 36 chr4 71351734 71351913 -84278207 - B3A SINE B2 -25 191 3 4 1129 296 286 66 0 chr4 71351913 71351999 -84278121 - MTEb LTR MaLR -52 327 236 4 1129 313 382 46 0 chr4 71352248 71352400 -84277720 - L1MC LINE L1 -705 5639 5481 4 1129 271 328 8 16 chr4 71352471 71352598 -84277522 - L1MEc LINE L1 -5719 681 556 4 1129 4220 125 22 42 chr4 71352999 71353765 -84276355 + RMER17A LTR ERVK 1 751 0 5 1129 434 296 272 76 chr4 71354656 71354972 -84275148 + MTE2b LTR MaLR 1 378 -1 5 1129 257 323 11 0 chr4 71356324 71356417 -84273703 + Charlie12 DNA MER1_type 1241 1334 -1539 5 1129 498 211 11 0 chr4 71356431 71356526 -84273594 + Charlie12 DNA MER1_type 1427 1522 -1351 5 1129 1382 302 43 28 chr4 71356530 71357068 -84273052 + Charlie12 DNA MER1_type 1893 2438 -435 5 1129 2613 193 33 25 chr4 71357068 71357679 -84272441 + Lx4B LINE L1 6438 7053 -5 5 1129 893 248 24 20 chr4 71357693 71357944 -84272176 + Charlie12 DNA MER1_type 2416 2667 -206 5 1129 1038 78 0 0 chr4 71358214 71358355 -84271765 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 5 1129 1036 110 7 0 chr4 71358356 71358501 -84271619 + B1_Mus2 SINE Alu 2 147 0 5 1129 207 152 21 21 chr4 71359467 71359514 -84270606 + T-rich Low_complexity Low_complexity 4 50 0 5 1129 444 51 0 0 chr4 71359559 71359618 -84270502 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1129 1615 216 50 3 chr4 71359739 71360096 -84270024 - ORR1C1 LTR MaLR 0 378 5 5 1129 24 0 0 0 chr4 71360292 71360316 -84269804 + AT_rich Low_complexity Low_complexity 1 24 0 5 1129 5729 149 17 40 chr4 71360316 71361303 -84268817 - Lx4A LINE L1 -2 7056 6093 5 1129 832 198 11 28 chr4 71361304 71361486 -84268634 + B2_Mm2 SINE B2 12 190 -5 5 1129 23 0 0 0 chr4 71361833 71361856 -84268264 + AT_rich Low_complexity Low_complexity 1 23 0 5 1129 619 59 10 10 chr4 71362454 71362557 -84267563 + L1Md_F2 LINE L1 6480 6582 0 5 1129 317 159 16 0 chr4 71363248 71363311 -84266809 + GA-rich Low_complexity Low_complexity 4 67 0 5 1129 468 232 213 11 chr4 71363490 71363629 -84266491 + MLT1D LTR MaLR 155 324 -181 5 1129 495 0 0 0 chr4 71363629 71363684 -84266436 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1129 468 275 162 33 chr4 71363684 71363833 -84266287 + MLT1D LTR MaLR 310 465 -2 5 1129 408 40 0 0 chr4 71364023 71364073 -84266047 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1129 333 279 141 78 chr4 71364075 71364281 -84265839 + L1ME1 LINE L1 5957 6175 -4 5 1129 30646 79 7 4 chr4 71364719 71369943 -84260177 + L1Md_F2 LINE L1 253 5589 -297 5 1129 7697 59 2 9 chr4 71369943 71370932 -84259188 + L1Md_F2 LINE L1 5590 6571 -14 5 1129 279 191 0 0 chr4 71370937 71371000 -84259120 + A-rich Low_complexity Low_complexity 1 63 0 5 1129 26 30 0 0 chr4 71372663 71372696 -84257424 + AT_rich Low_complexity Low_complexity 1 33 0 5 1129 778 318 36 35 chr4 71373031 71373465 -84256655 - RMER15 LTR ERVL -19 556 2 5 1129 579 15 0 0 chr4 71373923 71373991 -84256129 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1129 2692 107 19 7 chr4 71374001 71374191 -84255929 + BGLII LTR ERVK 1 189 -232 5 1129 1092 94 0 0 chr4 71374191 71374350 -84255770 + (GAA)n Simple_repeat Simple_repeat 1 159 0 5 1129 2692 107 19 7 chr4 71374350 71374575 -84255545 + BGLII LTR ERVK 190 421 0 5 1129 192 97 0 0 chr4 71374610 71374641 -84255479 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1129 443 337 156 45 chr4 71374859 71375173 -84254947 + L1MCa LINE L1 79 427 -6081 5 1129 565 279 50 27 chr4 71375811 71376032 -84254088 - Lx9 LINE L1 -825 6819 6594 5 1129 3748 106 6 11 chr4 71376040 71376634 -84253486 + L1_Mus3 LINE L1 6097 6638 0 5 1129 261 313 0 12 chr4 71376666 71376750 -84253370 + L1MCa LINE L1 646 728 -5780 5 1129 745 317 7 36 chr4 71376973 71377248 -84252872 - Lx8 LINE L1 -742 6731 6465 5 1129 1101 330 81 10 chr4 71377335 71377926 -84252194 + Lx9 LINE L1 6306 6938 -706 5 1129 8098 64 8 2 chr4 71377929 71379684 -84250436 - L1Md_F2 LINE L1 -15 6567 4801 5 1129 1005 297 90 48 chr4 71379681 71380334 -84249786 + Lx9 LINE L1 6942 7622 -22 5 1129 780 11 0 0 chr4 71380361 71380450 -84249670 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 5 1129 258 394 61 0 chr4 71380476 71380575 -84249545 + ID_B1 SINE B4 89 193 -31 5 1129 635 0 13 0 chr4 71381496 71381571 -84248549 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 5 1129 219 128 64 0 chr4 71381573 71381620 -84248500 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 5 1129 761 178 6 28 chr4 71381973 71382152 -84247968 - Lx LINE L1 -6 6648 6474 5 1129 16870 156 22 18 chr4 71382154 71385794 -84244326 - Lx LINE L1 -563 6091 2451 5 1129 5162 119 15 4 chr4 71385794 71386581 -84243539 + Lx3_Mus LINE L1 6206 7001 -8 5 1129 3563 221 31 97 chr4 71386658 71387513 -84242607 + RMER1A Other Other 105 875 -155 5 1129 234 0 0 0 chr4 71387513 71387539 -84242581 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1129 3563 221 31 97 chr4 71387539 71387662 -84242458 + RMER1A Other Other 876 1018 -12 5 1129 298 267 24 24 chr4 71388539 71388662 -84241458 - MER53 DNA hAT -1 192 70 5 1129 563 259 168 86 chr4 71388732 71389084 -84241036 - MTEa LTR MaLR -12 367 4 5 1129 2470 334 112 48 chr4 71389084 71390526 -84239594 - MTEa-int LTR MaLR -127 1453 1 5 1129 644 349 53 72 chr4 71390534 71390908 -84239212 - MTEa LTR MaLR -5 374 8 5 1129 294 326 41 82 chr4 71391272 71391466 -84238654 - RLTR41 LTR ERV1 -62 384 199 5 1129 217 0 29 29 chr4 71391738 71391772 -84238348 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1129 183 173 0 0 chr4 71392020 71392072 -84238048 + CT-rich Low_complexity Low_complexity 1 52 0 5 1129 544 221 98 8 chr4 71392389 71392521 -84237599 + B1_Mur1 SINE Alu 1 144 -5 5 1129 1629 194 80 0 chr4 71392551 71392901 -84237219 - ORR1C1 LTR MaLR 0 378 1 5 1129 21 0 0 0 chr4 71392905 71392926 -84237194 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 2820 154 23 45 chr4 71393364 71394094 -84236026 + L1VL4 LINE L1 345 1070 -2489 5 1129 5121 82 8 0 chr4 71394079 71394834 -84235286 + L1_Mm LINE L1 2912 3672 -2211 5 1129 1361 40 0 0 chr4 71394841 71395018 -84235102 + L1_Mm LINE L1 3923 4099 -1784 5 1129 2588 101 63 10 chr4 71395050 71395449 -84234671 + BGLII_Mus LTR ERVK 1 420 -2 5 1129 1501 58 0 0 chr4 71395700 71395891 -84234229 + L1_Mus1 LINE L1 6377 6567 0 5 1129 328 345 40 12 chr4 71396692 71396865 -84233255 + L1MCa LINE L1 2121 2298 -4210 5 1129 25 0 0 0 chr4 71397537 71397562 -84232558 + AT_rich Low_complexity Low_complexity 1 25 0 5 1129 539 216 26 0 chr4 71398626 71398742 -84231378 + MTD LTR MaLR 1 119 -300 5 1129 579 29 0 0 chr4 71398934 71399003 -84231117 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1129 797 270 43 36 chr4 71399138 71399442 -84230678 - Lx9 LINE L1 -469 7175 6870 5 1129 663 189 0 16 chr4 71399455 71399579 -84230541 + Lx5 LINE L1 6680 6801 -249 5 1129 2763 82 42 126 chr4 71399579 71400097 -84230023 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1129 6208 60 13 0 chr4 71400097 71400917 -84229203 - IAPEz-int LTR ERVK 0 6481 5651 5 1129 2595 58 0 3 chr4 71400910 71401253 -84228867 - IAPEz-int LTR ERVK -4781 1700 1359 5 1129 3564 67 2 20 chr4 71401253 71401757 -84228363 - IAPEz-int LTR ERVK -5819 662 168 5 1129 248 309 0 0 chr4 71401757 71401812 -84228308 - RLTR27 LTR ERVK -34 275 221 5 1129 662 97 29 10 chr4 71401812 71401916 -84228204 - IAPEz-int LTR ERVK -7331 250 145 5 1129 234 321 0 0 chr4 71401916 71401972 -84228148 - RLTR27 LTR ERVK -34 275 220 5 1129 550 49 16 164 chr4 71401972 71402094 -84228026 - IAPEz-int LTR ERVK -6369 112 9 5 1129 2782 87 29 112 chr4 71402095 71402613 -84227507 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1129 819 249 65 9 chr4 71402613 71402844 -84227276 + Lx5 LINE L1 6796 7039 -11 5 1129 1291 303 33 20 chr4 71402862 71403320 -84226800 - Lx9 LINE L1 -766 6878 6415 5 1129 466 29 29 0 chr4 71403401 71403469 -84226651 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 5 1129 273 29 0 0 chr4 71403472 71403506 -84226614 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1129 22 0 0 0 chr4 71403515 71403537 -84226583 + AT_rich Low_complexity Low_complexity 1 22 0 5 1129 1059 254 50 17 chr4 71403589 71403829 -84226291 + MTD LTR MaLR 158 405 -14 5 1129 2946 26 12 12 chr4 71403973 71404319 -84225801 - ORR1A0 LTR MaLR 0 346 1 5 1129 13824 48 25 1 chr4 71404319 71406069 -84224051 - ORR1A0-int LTR MaLR 0 1792 1 5 1129 2949 26 6 3 chr4 71406070 71406414 -84223706 - ORR1A0 LTR MaLR -1 345 1 5 1129 571 178 11 33 chr4 71406485 71406665 -84223455 + GA-rich Low_complexity Low_complexity 3 178 0 5 1129 21 0 0 0 chr4 71407754 71407775 -84222345 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 426 39 0 0 chr4 71408210 71408262 -84221858 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1129 471 35 0 0 chr4 71408262 71408318 -84221802 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1129 346 359 88 6 chr4 71408811 71408982 -84221138 - L1M5 LINE L1 -539 5701 5517 5 1129 326 275 11 0 chr4 71408989 71409080 -84221040 - HAL1 LINE L1 -1132 1375 1284 5 1129 356 278 55 6 chr4 71409245 71409408 -84220712 - L1MA8 LINE L1 -20 6271 6101 5 1129 1297 137 308 4 chr4 71409656 71409906 -84220214 + ORR1A1 LTR MaLR 1 326 0 5 1129 9679 163 36 74 chr4 71409907 71411944 -84218176 + ORR1A1-int LTR MaLR 2 1961 -2 5 1129 1630 218 3 42 chr4 71411951 71412306 -84217814 + ORR1A1 LTR MaLR 6 346 0 5 1129 1042 253 28 4 chr4 71412337 71412591 -84217529 - MTD LTR MaLR -148 271 12 5 1129 1116 70 7 0 chr4 71412950 71413093 -84217027 + B1_Mus2 SINE Alu 1 144 -3 5 1129 210 37 0 0 chr4 71413093 71413120 -84217000 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1129 1335 294 79 19 chr4 71413271 71413836 -84216284 - Lx6 LINE L1 -21 7439 6455 5 1129 323 319 79 21 chr4 71414070 71414550 -84215570 + L1M4 LINE L1 2841 3348 -2798 5 1129 260 71 48 0 chr4 71414797 71414839 -84215281 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1129 1086 65 0 7 chr4 71414849 71414988 -84215132 - B1_Mm SINE Alu 0 147 10 5 1129 339 197 0 0 chr4 71414989 71415050 -84215070 - L1VL1 LINE L1 -6316 106 46 5 1129 216 191 0 0 chr4 71415203 71415250 -84214870 + T-rich Low_complexity Low_complexity 4 50 0 5 1129 1841 137 19 7 chr4 71415336 71415645 -84214475 + L1_Mus3 LINE L1 6325 6637 -1 5 1129 287 185 25 0 chr4 71416114 71416195 -84213925 + GA-rich Low_complexity Low_complexity 3 85 0 5 1129 446 324 28 0 chr4 71416214 71416356 -84213764 + B1_Mur2 SINE Alu 4 149 0 5 1129 576 29 0 0 chr4 71416466 71416536 -84213584 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1129 260 188 30 30 chr4 71419460 71419526 -84210594 + B1F1 SINE Alu 83 148 -1 5 1129 211 403 0 24 chr4 71419533 71419660 -84210460 + RSINE1 SINE B4 42 165 0 5 1129 1742 310 57 11 chr4 71419941 71420748 -84209372 + Lx8 LINE L1 6464 7307 -166 5 1129 2134 125 16 0 chr4 71420864 71421183 -84208937 + ORR1A2 LTR MaLR 4 327 0 5 1129 8547 174 28 54 chr4 71421185 71423023 -84207097 + ORR1A2-int LTR MaLR 3 1792 0 5 1129 1880 149 35 0 chr4 71423024 71423339 -84206781 + ORR1A2 LTR MaLR 2 327 0 5 1129 796 60 68 8 chr4 71423479 71423597 -84206523 + L1Md_F2 LINE L1 6439 6563 -19 5 1129 493 344 74 4 chr4 71424049 71424280 -84205840 + MER34A LTR ERV1 146 392 -179 5 1129 298 327 25 32 chr4 71424669 71424827 -84205293 + MER34A LTR ERV1 410 566 -5 5 1129 1324 166 41 11 chr4 71425103 71425422 -84204698 + Lx3C LINE L1 6589 6973 0 5 1129 366 80 0 0 chr4 71426762 71426812 -84203308 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 5 1129 186 143 0 0 chr4 71426816 71426851 -84203269 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1129 285 269 51 13 chr4 71426977 71427056 -84203064 + ID4 SINE ID 1 82 -1 5 1129 655 262 54 20 chr4 71427750 71427898 -84202222 + B3A SINE B2 30 182 -16 5 1129 3235 112 56 14 chr4 71428056 71428553 -84201567 + MT2B LTR ERVL 4 521 -80 5 1129 360 0 0 0 chr4 71430172 71430212 -84199908 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1129 252 361 7 65 chr4 71431862 71432001 -84198119 + LTR16B LTR ERVL 320 450 -13 6 1129 21 0 0 0 chr4 71432792 71432813 -84197307 + AT_rich Low_complexity Low_complexity 1 21 0 6 1129 1071 128 24 0 chr4 71433225 71433389 -84196731 - ORR1A3 LTR MaLR 0 326 159 6 141 1040 304 61 55 chr4 71433433 71434407 -84195713 + L1M2 LINE L1 4396 5374 -769 6 1130 669 275 35 9 chr4 71434500 71434726 -84195394 + Lx8 LINE L1 6233 6588 -1056 6 1130 32 0 0 0 chr4 71435350 71435382 -84194738 + AT_rich Low_complexity Low_complexity 1 32 0 6 1130 328 271 62 54 chr4 71435804 71435828 -84194292 - L1MC5 LINE L1 -117 7844 7822 6 1130 1894 95 7 0 chr4 71435828 71436101 -84194019 + L1_Mus3 LINE L1 6360 6634 -4 6 1130 328 271 62 54 chr4 71436101 71436205 -84193915 - L1MC5 LINE L1 -140 7821 7715 6 1130 273 39 39 19 chr4 71436205 71436257 -84193863 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 6 1130 890 273 59 70 chr4 71436463 71436613 -84193507 - Lx7 LINE L1 -1667 5977 5797 6 1130 1153 121 15 26 chr4 71436613 71436808 -84193312 - B2_Mm2 SINE B2 -1 194 2 6 1130 890 253 81 61 chr4 71436808 71437165 -84192955 - Lx7 LINE L1 -51 5796 5429 6 1130 250 135 21 82 chr4 71437217 71437314 -84192806 - L1MC5 LINE L1 -297 7664 7574 6 1130 1105 45 8 0 chr4 71437368 71437500 -84192620 + B1_Mus1 SINE Alu 5 137 -11 6 1130 315 0 0 0 chr4 71437500 71437535 -84192585 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1130 331 261 134 78 chr4 71437859 71438038 -84192082 - L1MC5 LINE L1 -733 7228 7040 6 1130 9414 161 19 17 chr4 71438154 71440102 -84190018 - L1_Mur2 LINE L1 -1055 4822 2872 6 1130 31086 21 18 0 chr4 71440131 71444010 -84186110 + L1_Mm LINE L1 1659 5607 -276 6 1130 4265 19 16 0 chr4 71444010 71444495 -84185625 - MT2_Mm LTR ERVL 0 493 1 6 1130 302 0 0 0 chr4 71444495 71444533 -84185587 - MERVL-int LTR ERVL 0 5485 5448 6 1130 383 167 46 35 chr4 71444533 71444620 -84185500 - ORR1A3-int LTR MaLR -1323 640 553 6 1130 45399 18 1 0 chr4 71444620 71449976 -84180144 - MERVL-int LTR ERVL -125 5360 1 6 1130 4436 16 0 0 chr4 71449976 71450469 -84179651 - MT2_Mm LTR ERVL 0 493 1 6 1130 8300 32 0 3 chr4 71450469 71451450 -84178670 + L1Md_A LINE L1 5603 6580 -2 6 1130 9610 112 45 6 chr4 71451450 71453754 -84176366 - L1VL2 LINE L1 -1056 2559 153 6 1130 567 280 62 78 chr4 71453755 71454011 -84176109 + MTE2a LTR MaLR 128 379 0 6 1130 498 296 82 16 chr4 71454061 71454243 -84175877 + B4A SINE B4 27 220 -72 6 1130 182 415 12 0 chr4 71454872 71454954 -84175166 - L2b LINE L2 0 3375 3293 6 1130 2886 136 16 20 chr4 71454954 71455441 -84174679 - Lx2 LINE L1 -298 6699 6215 6 1130 1702 136 71 3 chr4 71455441 71455737 -84174383 + Lx LINE L1 6339 6654 0 6 1130 848 321 14 0 chr4 71455787 71456008 -84174112 + B4 SINE B4 4 227 -65 6 1130 1361 331 34 27 chr4 71456023 71456619 -84173501 + Lx8 LINE L1 6626 7225 -248 6 1130 3447 182 55 24 chr4 71456619 71457732 -84172388 + MYSERV16_I-int LTR ERVK 85 1349 -977 6 1130 9343 57 10 1 chr4 71457733 71459642 -84170478 - L1Md_F2 LINE L1 -3 6579 4654 6 1130 4300 157 47 10 chr4 71459642 71460576 -84169544 + MYSERV16_I-int LTR ERVK 1357 2325 -1 6 1130 1843 217 83 35 chr4 71460580 71461119 -84169001 + RLTR20A LTR ERVK 5 541 0 6 1130 272 336 108 14 chr4 71461129 71461268 -84168852 + Tigger7 DNA MER2_type 68 219 -2272 6 1130 285 264 88 0 chr4 71461320 71461445 -84168675 - L1MB3 LINE L1 -14 6169 6034 6 1130 1235 334 20 82 chr4 71465238 71466158 -84163962 - Lx8 LINE L1 -30 7443 6581 6 1130 729 0 0 0 chr4 71466211 71466292 -84163828 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 6 1130 1109 93 0 0 chr4 71466307 71466447 -84163673 + B1_Mus1 SINE Alu 1 140 -8 6 1130 396 0 0 0 chr4 71466460 71466504 -84163616 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1130 203 125 0 24 chr4 71466498 71466539 -84163581 + (GGGGA)n Simple_repeat Simple_repeat 4 43 0 6 1130 777 22 0 0 chr4 71466539 71466630 -84163490 + (GAGAA)n Simple_repeat Simple_repeat 1 91 0 6 1130 371 358 96 30 chr4 71470865 71471353 -84158767 + MER34A LTR ERV1 4 548 -23 6 1130 671 144 8 0 chr4 71471746 71471871 -84158249 + (TA)n Simple_repeat Simple_repeat 2 127 0 6 1130 36 0 0 0 chr4 71471924 71471960 -84158160 + AT_rich Low_complexity Low_complexity 1 36 0 6 1130 421 314 33 79 chr4 71474162 71474314 -84155806 + B3A SINE B2 54 198 0 6 1130 252 0 0 0 chr4 71475322 71475350 -84154770 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 6 1130 405 319 42 47 chr4 71475357 71476016 -84154104 - L1M2 LINE L1 -2917 3226 2568 6 1130 29046 48 20 19 chr4 71476000 71480515 -84149605 + L1Md_Gf LINE L1 271 4925 -961 6 1130 237 167 46 77 chr4 71480515 71480580 -84149540 - RMER20A LTR ERVK -268 248 186 6 1130 29046 48 20 19 chr4 71480580 71480846 -84149274 + L1Md_Gf LINE L1 4926 5201 -685 6 1130 1861 101 0 0 chr4 71480841 71481119 -84149001 - Lx LINE L1 -710 5944 5667 6 1130 1086 146 23 9 chr4 71481121 71481329 -84148791 - L1_Mur1 LINE L1 -1045 4841 4631 6 1130 330 26 0 0 chr4 71481329 71481368 -84148752 + (TTG)n Simple_repeat Simple_repeat 1 39 0 6 1130 1086 146 23 9 chr4 71481368 71481380 -84148740 - L1_Mur1 LINE L1 -1256 4630 4619 6 1130 1486 264 26 114 chr4 71481447 71481891 -84148229 + L1_Mur3 LINE L1 4903 5270 -610 6 1130 741 251 66 5 chr4 71481891 71482087 -84148033 + B3 SINE B2 1 208 -8 6 1130 1486 264 26 114 chr4 71482087 71482463 -84147657 + L1_Mur3 LINE L1 5271 5650 -230 6 1130 5614 141 3 6 chr4 71482463 71483348 -84146772 - ORR1A2-int LTR MaLR -122 1841 959 6 1130 2686 149 7 0 chr4 71483365 71483794 -84146326 - ORR1A2-int LTR MaLR -1531 432 1 6 1130 1915 133 17 0 chr4 71483798 71484091 -84146029 - ORR1A2 LTR MaLR -8 319 22 6 1130 203 0 37 0 chr4 71484518 71484545 -84145575 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1130 306 0 0 0 chr4 71484545 71484578 -84145542 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1130 1156 302 79 12 chr4 71484579 71485071 -84145049 - Lx8 LINE L1 -1 7472 6948 6 1130 220 143 47 12 chr4 71485187 71485272 -84144848 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1130 1970 311 46 23 chr4 71485273 71486014 -84144106 + Lx8 LINE L1 6173 6930 -543 6 1130 210 191 15 60 chr4 71486034 71486101 -84144019 + CT-rich Low_complexity Low_complexity 4 67 0 6 1130 371 321 0 0 chr4 71486249 71486333 -84143787 + RSINE1 SINE B4 79 162 -3 6 1130 9630 25 1 0 chr4 71487843 71489018 -84141102 - L1_Mm LINE L1 -217 5666 4491 6 1130 2498 57 0 6 chr4 71489018 71489338 -84140782 + L1Md_T LINE L1 6265 6582 0 6 1130 189 74 0 0 chr4 71489421 71489448 -84140672 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1130 252 77 0 0 chr4 71489590 71489629 -84140491 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1130 31879 86 14 6 chr4 71489748 71495825 -84134295 - L1Md_F2 LINE L1 -13 6569 441 6 1130 347 295 5 0 chr4 71496219 71496413 -84133707 + (TGGA)n Simple_repeat Simple_repeat 1 195 0 6 1130 228 226 103 9 chr4 71497180 71497287 -84132833 - Lx9 LINE L1 -50 7594 7478 6 1130 222 296 54 36 chr4 71497993 71498105 -84132015 + (CATG)n Simple_repeat Simple_repeat 2 115 0 6 1130 997 335 58 13 chr4 71499374 71499752 -84130368 - MLT1E2 LTR MaLR -12 615 221 6 1130 243 0 0 0 chr4 71499897 71499924 -84130196 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1130 414 0 0 0 chr4 71499924 71499969 -84130151 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1130 396 0 0 0 chr4 71501087 71501131 -84128989 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1130 659 169 48 0 chr4 71502427 71502551 -84127569 - ORR1A1 LTR MaLR -49 297 168 2 1130 998 144 0 6 chr4 71504037 71504218 -84125902 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1130 487 160 15 104 chr4 71504246 71504448 -84125672 - RMER17C LTR ERVK -136 274 91 4 1130 384 82 0 0 chr4 71505501 71505562 -84124558 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1130 293 272 54 31 chr4 71506933 71507062 -84123058 + RMER15 LTR ERVL 379 510 -65 6 1130 538 330 125 25 chr4 71507117 71507397 -84122723 - MLT1A0 LTR MaLR -53 312 5 7 1130 2438 174 9 18 chr4 71509248 71509704 -84120416 + Lx2B LINE L1 6544 6995 -5 8 1130 1217 263 108 19 chr4 71510118 71510490 -84119630 + MTD LTR MaLR 1 405 -14 9 1130 479 308 111 22 chr4 71510548 71510774 -84119346 + RMER5 LTR ERV1 84 329 -205 1 1130 256 288 80 18 chr4 71511248 71511411 -84118709 + RMER5 LTR ERV1 351 523 -11 1 1130 1126 207 14 0 chr4 71511687 71511909 -84118211 - URR1B DNA MER1_type 0 225 1 1 1130 1005 48 0 0 chr4 71511926 71512051 -84118069 + L1Md_F2 LINE L1 5462 5586 -297 1 1130 7979 35 9 43 chr4 71512051 71513079 -84117041 + L1Md_F2 LINE L1 5587 6579 -3 1 1130 1480 198 96 55 chr4 71513415 71513778 -84116342 + ORR1C1 LTR MaLR 1 378 0 1 1130 309 135 0 0 chr4 71514400 71514452 -84115668 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1130 1833 259 13 10 chr4 71514452 71514850 -84115270 + MTD LTR MaLR 13 411 -8 1 1130 25 0 0 0 chr4 71515258 71515283 -84114837 + AT_rich Low_complexity Low_complexity 1 25 0 1 1130 4821 199 68 36 chr4 71515510 71516750 -84113370 + Lx5 LINE L1 4493 5781 -96 1 1130 520 229 122 0 chr4 71516750 71516881 -84113239 + B1_Mus1 SINE Alu 1 147 -1 1 1130 4821 158 25 67 chr4 71516881 71517110 -84113010 + Lx5 LINE L1 5782 6010 -1040 1 1130 1363 160 39 78 chr4 71517117 71517423 -84112697 + ORR1A4 LTR MaLR 1 294 -35 1 1130 18194 12 1 0 chr4 71517423 71519596 -84110524 + L1Md_A LINE L1 3413 5586 -297 2 1130 8764 19 0 0 chr4 71519596 71520592 -84109528 + L1Md_A LINE L1 5587 6582 0 2 1130 310 137 59 0 chr4 71520592 71520643 -84109477 + ORR1A4 LTR MaLR 276 329 0 1 1130 2663 212 36 77 chr4 71520643 71521523 -84108597 + ORR1A4-int LTR MaLR 1 793 -1170 1 1130 4356 235 52 37 chr4 71521525 71522666 -84107454 + RMER12B LTR ERVK 1 1158 -246 2 1130 432 0 0 0 chr4 71522692 71522740 -84107380 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1130 439 230 30 0 chr4 71522765 71522865 -84107255 + RLTR21 LTR ERVK 1470 1572 0 2 1130 278 224 0 183 chr4 71522866 71522948 -84107172 + MT2B2 LTR ERVL 220 286 -298 2 1130 4633 172 117 92 chr4 71522910 71524124 -84105996 + ORR1A4-int LTR MaLR 720 1963 0 1 1130 856 138 0 189 chr4 71524124 71524357 -84105763 + ORR1A4 LTR MaLR 1 189 -140 1 1130 403 295 91 59 chr4 71524390 71524610 -84105510 - MER31A LTR ERV1 -134 351 125 2 1130 3218 111 12 14 chr4 71524753 71525245 -84104875 + L1_Mus3 LINE L1 6148 6638 0 2 1130 5544 5 0 0 chr4 71525640 71526253 -84103867 + L1Md_A LINE L1 5970 6582 0 2 1130 207 0 0 0 chr4 71526268 71526291 -84103829 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1130 348 24 0 0 chr4 71527413 71527454 -84102666 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 1130 402 21 0 0 chr4 71527566 71527613 -84102507 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1130 50 59 0 0 chr4 71528703 71528788 -84101332 + AT_rich Low_complexity Low_complexity 1 85 0 3 1130 420 55 0 0 chr4 71529484 71529539 -84100581 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1130 534 343 13 130 chr4 71530045 71530360 -84099760 + MTE2a LTR MaLR 20 297 -82 3 1130 1987 242 152 18 chr4 71531251 71532393 -84097727 + L1_Rod LINE L1 931 2223 -3624 3 1130 4176 136 97 4 chr4 71534790 71535530 -84094590 - RMER17D2 LTR ERVK 0 809 1 3 1130 35 41 0 0 chr4 71535563 71535612 -84094508 + AT_rich Low_complexity Low_complexity 1 49 0 3 1130 295 214 52 137 chr4 71536439 71536650 -84093470 + L1MA4 LINE L1 5714 5906 -394 3 1130 238 236 0 128 chr4 71537086 71537188 -84092932 - MER67C LTR ERV1 -137 574 486 3 1130 198 103 0 0 chr4 71537202 71537231 -84092889 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1130 875 295 104 30 chr4 71538125 71539077 -84091043 - L1MA5A LINE L1 -469 5828 4813 4 1130 282 56 0 0 chr4 71539089 71539125 -84090995 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1130 546 239 9 17 chr4 71539510 71539625 -84090495 - PB1D10 SINE Alu -3 114 1 4 1130 2801 106 12 2 chr4 71540125 71540542 -84089578 + BGLII LTR ERVK 1 421 0 4 1130 23 25 0 24 chr4 71540710 71540732 -84089388 + AT_rich Low_complexity Low_complexity 1 22 0 4 1130 4551 123 24 7 chr4 71540732 71541453 -84088667 - Lx3A LINE L1 -1 6980 6248 4 1130 23 25 0 24 chr4 71541453 71541471 -84088649 + AT_rich Low_complexity Low_complexity 1 18 0 4 1130 12105 44 0 0 chr4 71541890 71543441 -84086679 + L1Md_T LINE L1 4036 5586 -297 4 1130 8408 34 0 0 chr4 71543441 71544434 -84085686 + L1Md_T LINE L1 5587 6579 -3 4 1130 1130 29 0 0 chr4 71544435 71544572 -84085548 + L1Md_F3 LINE L1 5450 5586 -297 4 1130 7768 54 9 0 chr4 71544572 71545547 -84084573 + L1Md_F3 LINE L1 5587 6570 -14 4 1130 660 76 0 0 chr4 71545567 71545659 -84084461 - L1_Mus3 LINE L1 -255 6383 6292 4 1130 1655 93 16 4 chr4 71545659 71545939 -84084181 + L1_Mus3 LINE L1 6382 6638 0 4 1130 420 355 105 40 chr4 71545969 71546245 -84083875 + LTR16A1 LTR ERVL 158 451 -5 5 1130 781 381 50 11 chr4 71546708 71547090 -84083030 - LTR16A LTR ERVL -6 445 49 5 1130 525 274 166 116 chr4 71547543 71547771 -84082349 + RLTR18 LTR ERVK 31 232 -384 5 1130 743 87 32 0 chr4 71547771 71547897 -84082223 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 1130 525 274 166 116 chr4 71547897 71548222 -84081898 + RLTR18 LTR ERVK 233 612 -4 5 1130 28 61 0 0 chr4 71548406 71548455 -84081665 + AT_rich Low_complexity Low_complexity 1 49 0 5 1130 2481 315 47 18 chr4 71548472 71549611 -84080509 - Lx8 LINE L1 -30 7443 6272 5 1130 510 17 0 0 chr4 71549655 71549714 -84080406 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1130 253 48 62 31 chr4 71550399 71550464 -84079656 + (TTTTG)n Simple_repeat Simple_repeat 3 69 0 5 1130 6800 106 5 4 chr4 71550477 71552180 -84077940 - L1_Mus1 LINE L1 -1 6566 4862 5 1130 1920 41 4 0 chr4 71552181 71552423 -84077697 + L1Md_F2 LINE L1 5344 5586 -297 5 1130 7923 55 2 6 chr4 71552423 71553423 -84076697 + L1Md_F2 LINE L1 5587 6582 0 5 1130 354 328 75 0 chr4 71553465 71553599 -84076521 + RMER15 LTR ERVL 430 573 -2 6 1130 421 280 180 56 chr4 71553867 71554173 -84075947 - MLT1A LTR MaLR 0 374 31 6 1130 213 121 0 0 chr4 71554449 71554482 -84075638 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1130 17375 113 5 85 chr4 71554482 71556131 -84073989 - L1Md_F LINE L1 -1007 4876 3282 6 1130 1395 34 23 0 chr4 71556131 71556307 -84073813 - B2_Mm1t SINE B2 -3 190 11 6 1130 17375 113 5 85 chr4 71556307 71558949 -84071171 - L1Md_F LINE L1 -1007 3281 725 6 1130 399 293 15 8 chr4 71558951 71559085 -84071035 - L1Md_F LINE L1 -5807 809 675 6 1130 439 301 29 52 chr4 71559129 71559430 -84070690 - L1VL1 LINE L1 -6022 400 4 6 1130 252 0 0 0 chr4 71560248 71560276 -84069844 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 1130 926 329 43 51 chr4 71560473 71560979 -84069141 + Lx8 LINE L1 6970 7471 -2 6 1130 318 316 137 0 chr4 71561105 71561222 -84068898 - Lx8 LINE L1 -450 7023 6891 6 1130 32 26 0 0 chr4 71561361 71561400 -84068720 + AT_rich Low_complexity Low_complexity 1 39 0 6 1130 441 0 0 0 chr4 71561441 71561490 -84068630 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 7 1130 294 348 29 69 chr4 71561505 71561678 -84068442 - ID_B1 SINE B4 -49 175 10 7 1130 10449 181 56 17 chr4 71561698 71563297 -84066823 - L1_Mur3 LINE L1 -2182 3698 2059 7 1130 414 85 0 0 chr4 71563297 71563356 -84066764 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1130 10449 181 55 16 chr4 71563356 71564174 -84065946 - L1_Mur3 LINE L1 -3822 2058 1186 7 141 35232 70 2 4 chr4 71564174 71570611 -84059509 - L1Md_F2 LINE L1 0 6585 66 7 1131 3795 239 35 2 chr4 71570612 71571460 -84058660 - L1_Mur3 LINE L1 -6527 1201 326 7 1131 468 111 0 0 chr4 71572092 71572164 -84057956 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1131 294 311 0 0 chr4 71572170 71572244 -84057876 - ID4 SINE ID -5 78 5 7 1131 21 0 0 0 chr4 71572248 71572269 -84057851 + AT_rich Low_complexity Low_complexity 1 21 0 7 1131 23 0 0 0 chr4 71572506 71572529 -84057591 + AT_rich Low_complexity Low_complexity 1 23 0 7 1131 522 164 0 0 chr4 71573522 71573668 -84056452 + (TCTCTG)n Simple_repeat Simple_repeat 3 148 0 7 1131 447 68 0 0 chr4 71573713 71573772 -84056348 + (TCC)n Simple_repeat Simple_repeat 3 61 0 8 1131 408 262 0 0 chr4 71573772 71573852 -84056268 - B4 SINE B4 -206 86 7 8 1131 389 230 8 0 chr4 71573970 71574096 -84056024 + (TA)n Simple_repeat Simple_repeat 1 127 0 8 1131 402 136 0 0 chr4 71574095 71574176 -84055944 + (GA)n Simple_repeat Simple_repeat 2 82 0 8 1131 468 0 0 0 chr4 71574181 71574233 -84055887 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 8 1131 230 268 85 45 chr4 71574269 71574468 -84055652 + L1MEg LINE L1 773 979 -5105 8 1131 7217 82 9 7 chr4 71574942 71576559 -84053561 - L1Md_F2 LINE L1 -11 6571 4954 8 1131 37314 19 1 7 chr4 71576560 71581727 -84048393 + L1Md_F2 LINE L1 456 5586 -297 8 1131 8046 48 1 2 chr4 71581727 71582724 -84047396 + L1Md_F2 LINE L1 5587 6582 0 8 1131 11278 133 38 29 chr4 71582727 71585262 -84044858 - L1Md_F2 LINE L1 -3093 2790 244 8 1131 378 0 0 0 chr4 71585376 71585418 -84044702 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1131 500 262 74 0 chr4 71585559 71585681 -84044439 + ID_B1 SINE B4 82 212 -12 8 1131 441 0 0 0 chr4 71585681 71585730 -84044390 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1131 258 32 0 0 chr4 71585733 71585764 -84044356 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 9 1131 1034 106 12 0 chr4 71586066 71586227 -84043893 + L1_Mus3 LINE L1 6471 6633 -5 9 1131 1596 265 33 5 chr4 71586308 71586702 -84043418 - MTD LTR MaLR -14 405 1 9 1131 529 291 74 85 chr4 71586731 71587438 -84042682 + Lx5 LINE L1 2569 3299 -2844 9 1131 1958 204 51 5 chr4 71587447 71587463 -84042657 + MTC LTR MaLR 1 18 -403 9 1131 229 26 26 26 chr4 71587463 71587502 -84042618 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1131 1958 204 51 5 chr4 71587502 71587880 -84042240 + MTC LTR MaLR 19 412 -9 9 1131 604 26 40 0 chr4 71587971 71588047 -84042073 - L1Md_F3 LINE L1 -230 6354 6276 9 1131 1670 38 5 5 chr4 71588047 71588261 -84041859 + L1Md_F3 LINE L1 6353 6566 -18 9 1131 5559 237 114 79 chr4 71588263 71591168 -84038952 + Lx5 LINE L1 3354 6363 -687 9 1131 1461 276 66 28 chr4 71591202 71591735 -84038385 + Lx5 LINE L1 6506 7450 -10 9 1131 899 309 130 41 chr4 71591748 71593147 -84036973 + L1MA6 LINE L1 4425 5936 -364 9 1131 865 110 0 75 chr4 71593187 71593334 -84036786 + RMER19A LTR ERVK 26 161 -576 9 1131 690 296 74 16 chr4 71593779 71594036 -84036084 + B4 SINE B4 2 273 -19 1 1131 420 20 0 0 chr4 71594038 71594087 -84036033 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1131 195 100 0 0 chr4 71595828 71595858 -84034262 + (GGGGA)n Simple_repeat Simple_repeat 5 34 0 1 1131 267 332 99 73 chr4 71596777 71597079 -84033041 + MER74B LTR ERVL 95 423 -199 1 1131 26 0 0 0 chr4 71597226 71597252 -84032868 + AT_rich Low_complexity Low_complexity 1 26 0 1 1131 243 307 0 0 chr4 71598098 71598235 -84031885 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1131 594 269 133 11 chr4 71598522 71598710 -84031410 + B3 SINE B2 3 213 -3 1 1131 516 291 109 30 chr4 71598961 71599265 -84030855 - L1MB4 LINE L1 -40 6140 5813 1 1131 596 279 12 24 chr4 71599339 71599508 -84030612 + RMER15-int LTR ERVL 4559 4725 -274 1 1131 240 258 32 11 chr4 71599531 71599625 -84030495 - L1MB4 LINE L1 -457 5727 5632 1 1131 246 302 0 0 chr4 71599831 71599894 -84030226 - RMER15 LTR ERVL -105 470 408 1 1131 335 298 83 64 chr4 71600001 71600313 -84029807 + L1M2 LINE L1 3340 3657 -2486 1 1131 789 128 0 0 chr4 71600317 71600442 -84029678 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 1131 24 53 0 0 chr4 71601110 71601148 -84028972 + AT_rich Low_complexity Low_complexity 1 38 0 1 1131 1056 318 11 4 chr4 71601203 71601478 -84028642 + B4A SINE B4 14 290 -2 1 1131 225 0 0 0 chr4 71602089 71602114 -84028006 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 1 1131 225 0 0 0 chr4 71602133 71602158 -84027962 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1131 723 186 8 0 chr4 71602160 71602284 -84027836 - B1_Mur3 SINE Alu -16 133 9 1 1131 884 279 112 9 chr4 71602538 71602867 -84027253 + RLTR12B LTR ERVK 47 409 -119 1 1131 672 110 8 7 chr4 71603115 71603235 -84026885 + ORR1A1-int LTR MaLR 1 121 -1137 1 1131 389 0 0 75 chr4 71603242 71603295 -84026825 + ORR1A1 LTR MaLR 290 338 -8 1 1131 236 244 23 11 chr4 71603487 71603574 -84026546 - L1MEc LINE L1 -6221 179 92 1 1131 696 230 91 5 chr4 71604059 71604256 -84025864 - B3 SINE B2 -2 214 1 1 1131 1946 157 90 8 chr4 71604352 71604718 -84025402 - RMER1A Other Other -2 1028 633 1 1131 21 0 0 0 chr4 71604920 71604941 -84025179 + AT_rich Low_complexity Low_complexity 1 21 0 1 1131 2704 91 10 3 chr4 71605006 71605393 -84024727 - L1_Mus2 LINE L1 0 6566 6177 1 1131 264 304 0 0 chr4 71605742 71605798 -84024322 - ID_B1 SINE B4 -9 215 160 1 1131 233 375 0 53 chr4 71606150 71606226 -84023894 - RSINE1 SINE B4 -3 162 91 1 1131 1319 0 0 0 chr4 71606277 71606469 -84023651 + L1Md_T LINE L1 6428 6582 0 1 1131 235 325 47 39 chr4 71607174 71607302 -84022818 - MLT1A1 LTR MaLR -279 129 1 1 1131 216 211 0 0 chr4 71607911 71607949 -84022171 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 1 1131 357 311 0 26 chr4 71607956 71608108 -84022012 - L1MA4A LINE L1 -367 5936 5789 1 1131 236 167 0 0 chr4 71608210 71608246 -84021874 - RMER1C Other Other -1050 292 257 1 1131 846 0 0 0 chr4 71608259 71608353 -84021767 + (GAA)n Simple_repeat Simple_repeat 1 94 0 1 1131 477 161 15 23 chr4 71608353 71608450 -84021670 - RMER1B Other Other -386 680 520 1 1131 307 281 62 12 chr4 71608477 71608629 -84021491 - L1_Mm LINE L1 -1023 4854 4693 1 1131 809 273 76 109 chr4 71608631 71608676 -84021444 - MT2A LTR ERVL 0 601 548 1 1131 507 45 0 0 chr4 71608676 71608742 -84021378 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1131 1269 212 63 52 chr4 71608742 71609105 -84021015 - MT2A LTR ERVL -54 547 77 1 1131 780 112 0 53 chr4 71609105 71609256 -84020864 + L1_Mus4 LINE L1 6494 6636 0 1 1131 785 276 163 79 chr4 71609256 71609338 -84020782 - MT2A LTR ERVL -450 83 1 1 1131 594 241 57 105 chr4 71609351 71609685 -84020435 - MERVL_2A-int LTR ERVL -28 5733 5416 1 1131 1002 206 60 10 chr4 71609687 71609976 -84020144 + MT2A LTR ERVL 127 487 -46 1 1131 387 0 0 0 chr4 71609976 71610019 -84020101 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1131 507 242 153 16 chr4 71610019 71610063 -84020057 + MT2A LTR ERVL 488 531 -2 1 1131 909 239 22 25 chr4 71610063 71610287 -84019833 + MTC LTR MaLR 186 421 0 1 1131 468 0 0 0 chr4 71610393 71610445 -84019675 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1131 1147 68 0 0 chr4 71611143 71611289 -84018831 - B1_Mus2 SINE Alu 0 147 2 1 1131 1486 270 37 32 chr4 71611624 71612029 -84018091 + MTD LTR MaLR 13 419 0 1 1131 1979 276 77 71 chr4 71612031 71612987 -84017133 + MTD-int LTR MaLR 1 1062 -196 1 1131 180 94 0 111 chr4 71613837 71613873 -84016247 - MER5B DNA MER1_type -146 32 1 1 1131 225 0 0 0 chr4 71614005 71614030 -84016090 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1131 474 18 0 0 chr4 71614030 71614084 -84016036 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1131 2050 270 86 14 chr4 71614108 71615119 -84015001 - Lx8 LINE L1 -1397 6076 4991 1 1131 1536 269 28 20 chr4 71615131 71615526 -84014594 - MTD LTR MaLR -9 410 13 1 1131 1025 254 58 117 chr4 71615573 71615714 -84014406 - Lx8 LINE L1 -916 4964 4823 1 1131 693 120 0 8 chr4 71615714 71615840 -84014280 + L1_Mus4 LINE L1 6507 6631 -5 1 1131 1025 254 58 117 chr4 71615840 71616350 -84013770 - Lx8 LINE L1 -1058 4822 4352 1 1131 2773 92 26 0 chr4 71616390 71616780 -84013340 + MTB LTR MaLR 1 400 0 1 1131 1124 260 152 0 chr4 71616795 71617091 -84013029 - ORR1D2 LTR MaLR 0 370 30 1 1131 530 177 28 19 chr4 71617126 71617339 -84012781 + (TAGA)n Simple_repeat Simple_repeat 1 214 0 1 1131 1300 224 188 97 chr4 71617358 71617774 -84012346 - MT2A LTR ERVL -89 444 1 1 1131 1500 258 96 31 chr4 71617805 71618283 -84011837 - Lx8 LINE L1 -1712 4168 3641 1 1131 360 0 0 0 chr4 71618283 71618323 -84011797 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1 1131 1500 258 96 31 chr4 71618323 71618553 -84011567 - Lx8 LINE L1 -2240 3640 3414 1 1131 1446 220 236 16 chr4 71618573 71619014 -84011106 - Lx9 LINE L1 -10 7634 7097 1 1131 1485 289 146 58 chr4 71619012 71619087 -84011033 - L1_Mur3 LINE L1 -2443 3404 3343 1 1131 682 245 96 15 chr4 71619087 71619286 -84010834 - B3 SINE B2 0 216 2 1 1131 2346 281 108 32 chr4 71619286 71620902 -84009218 - L1_Mur3 LINE L1 -2505 3342 1496 1 1131 312 27 0 0 chr4 71620902 71620939 -84009181 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1131 2346 283 116 38 chr4 71620939 71621263 -84008857 - L1_Mur3 LINE L1 -4344 1503 1213 1 1131 24 0 0 0 chr4 71621583 71621607 -84008513 + AT_rich Low_complexity Low_complexity 1 24 0 1 1131 1893 223 0 61 chr4 71621988 71622220 -84007900 + MTC LTR MaLR 5 220 -201 1 1131 1135 75 0 14 chr4 71622220 71622368 -84007752 + B1_Mus2 SINE Alu 1 146 -1 1 1131 1893 223 0 61 chr4 71622368 71622579 -84007541 + MTC LTR MaLR 221 421 0 1 1131 475 243 19 37 chr4 71623292 71623399 -84006721 - B1_Mur1 SINE Alu 0 149 45 1 1131 503 293 133 35 chr4 71623434 71623525 -84006595 + MLT1B LTR MaLR 102 199 -191 1 1131 1503 114 16 39 chr4 71623525 71623780 -84006340 + L1_Mus3 LINE L1 6387 6635 -3 1 1131 503 293 133 35 chr4 71623780 71623943 -84006177 + MLT1B LTR MaLR 200 381 -9 1 1131 207 125 0 0 chr4 71624166 71624206 -84005914 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1131 2199 91 165 3 chr4 71624219 71624571 -84005549 + IAPLTR2a LTR ERVK 1 409 -2 1 1131 23422 42 30 4 chr4 71624571 71627565 -84002555 + IAPEz-int LTR ERVK 3 3076 -3405 1 1131 6201 60 12 16 chr4 71627551 71628405 -84001715 + IAPEz-int LTR ERVK 5630 6479 -2 1 1131 2199 91 165 3 chr4 71628407 71628759 -84001361 + IAPLTR2a LTR ERVK 1 409 -2 1 1131 21 36 0 0 chr4 71629442 71629470 -84000650 + AT_rich Low_complexity Low_complexity 1 28 0 1 1131 527 299 57 57 chr4 71631346 71631573 -83998547 - MER2 DNA MER2_type -1 344 118 1 1131 23 33 0 0 chr4 71631995 71632025 -83998095 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 784 319 77 53 chr4 71632097 71632514 -83997606 - Lx8 LINE L1 -254 7219 6793 1 1131 33913 64 3 1 chr4 71632511 71637916 -83992204 - L1Md_F2 LINE L1 0 6582 1163 1 1131 5462 127 12 19 chr4 71637912 71639065 -83991055 + L1_Mus4 LINE L1 4851 5993 -643 1 1131 462 79 0 0 chr4 71639191 71639254 -83990866 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1131 24 53 0 0 chr4 71639476 71639514 -83990606 + AT_rich Low_complexity Low_complexity 1 38 0 1 1131 269 385 60 7 chr4 71639568 71639717 -83990403 - RMER15 LTR ERVL -40 535 379 1 1131 692 106 53 0 chr4 71640155 71640268 -83989852 + Lx2 LINE L1 6878 6996 -1 1 1131 1120 84 0 0 chr4 71640279 71640421 -83989699 + B1_Mus2 SINE Alu 1 142 -5 1 1131 21 57 0 0 chr4 71640574 71640609 -83989511 + AT_rich Low_complexity Low_complexity 1 35 0 1 1131 370 239 78 35 chr4 71641373 71641536 -83988584 - RLTR42-int LTR ERVK -3731 1791 1639 1 1131 597 35 12 0 chr4 71642064 71642150 -83987970 + L1Md_F3 LINE L1 6496 6582 -2 1 1131 895 221 89 55 chr4 71642835 71643161 -83986959 + MTC-int LTR MaLR 810 1146 -112 1 1131 1626 42 0 18 chr4 71643170 71643387 -83986733 - L1Md_F3 LINE L1 -1 6583 6371 1 1131 4805 31 0 0 chr4 71643387 71643974 -83986146 + L1Md_F3 LINE L1 5801 6387 -197 1 1131 23 33 0 0 chr4 71643974 71644004 -83986116 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 477 126 456 5 chr4 71644024 71644208 -83985912 - Lx9 LINE L1 -5 7639 7373 1 1131 419 290 0 0 chr4 71644211 71644318 -83985802 + MTC-int LTR MaLR 1152 1258 0 1 1131 1755 224 42 5 chr4 71644318 71644722 -83985398 + MTC LTR MaLR 1 419 -2 1 1131 519 282 31 25 chr4 71644760 71645262 -83984858 - L1_Mur3 LINE L1 -4392 1488 937 1 1131 463 264 0 19 chr4 71645263 71645371 -83984749 - MTD LTR MaLR -95 324 219 1 1131 237 148 84 141 chr4 71645414 71645485 -83984635 - MTD LTR MaLR -354 67 1 1 1131 307 367 0 80 chr4 71645508 71645675 -83984445 - B4A SINE B4 -146 146 1 1 1131 819 308 105 7 chr4 71645780 71646397 -83983723 - L1_Rod LINE L1 -2850 2997 2320 1 1131 1988 234 29 17 chr4 71647575 71648247 -83981873 - L1_Mur3 LINE L1 -4478 1402 714 1 1131 1366 260 131 6 chr4 71648251 71648595 -83981525 + MTC LTR MaLR 35 421 0 1 1131 803 283 63 39 chr4 71648679 71648866 -83981254 - MTD LTR MaLR -106 294 110 1 1131 804 115 0 0 chr4 71648866 71648988 -83981132 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 1 1131 803 253 64 14 chr4 71648988 71649094 -83981026 - MTD LTR MaLR -301 118 7 1 1131 511 316 0 7 chr4 71649099 71649236 -83980884 - MLT1A0 LTR MaLR -227 138 3 1 1131 1081 280 163 9 chr4 71650520 71650612 -83979508 - MTD LTR MaLR 0 419 272 1 1131 911 118 0 62 chr4 71650612 71650756 -83979364 + B1_Mus1 SINE Alu 2 136 -12 1 1131 234 0 0 0 chr4 71650757 71650783 -83979337 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1131 1081 280 163 9 chr4 71650783 71651037 -83979083 - MTD LTR MaLR -148 271 20 1 1131 32168 86 11 5 chr4 71651063 71657209 -83972911 - L1Md_F2 LINE L1 -3 6579 391 1 1131 2058 309 93 67 chr4 71657237 71657418 -83972702 - MTD-int LTR MaLR -2 1256 1039 1 1131 2098 134 0 15 chr4 71657418 71657751 -83972369 - Lx LINE L1 0 6654 6327 1 1131 2058 309 93 67 chr4 71657751 71658775 -83971345 - MTD-int LTR MaLR -220 1038 20 1 1131 1516 66 0 0 chr4 71658855 71659053 -83971067 - L1_Mus2 LINE L1 -2 6564 6367 1 1131 1163 229 80 23 chr4 71659076 71659120 -83971000 - MTD LTR MaLR 0 419 377 1 1131 2241 185 52 31 chr4 71659120 71659638 -83970482 - RLTR24 LTR ERV1 0 529 1 2 1131 1163 236 93 28 chr4 71659638 71659944 -83970176 - MTD LTR MaLR -43 376 20 1 1131 342 98 0 0 chr4 71660909 71660960 -83969160 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2 1131 678 284 46 24 chr4 71662399 71662611 -83967509 - MLT1G LTR MaLR 0 591 358 2 1131 261 146 0 0 chr4 71662633 71662681 -83967439 + (GTTTG)n Simple_repeat Simple_repeat 3 50 0 2 1131 243 0 0 0 chr4 71662742 71662769 -83967351 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1131 189 121 0 0 chr4 71662771 71662804 -83967316 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1131 465 182 12 33 chr4 71662825 71663069 -83967051 + CT-rich Low_complexity Low_complexity 1 238 0 2 1131 551 318 96 17 chr4 71663762 71664002 -83966118 - MTD LTR MaLR -160 259 1 2 1131 1636 226 17 82 chr4 71664910 71665314 -83964806 + RLTR1B LTR ERV1 135 512 0 2 1131 1728 147 50 126 chr4 71665484 71665882 -83964238 - RLTR23 LTR ERV1 -62 368 1 2 1131 421 353 22 19 chr4 71665990 71666376 -83963744 - RLTR6-int LTR ERV1 -123 7655 7084 2 1131 8728 89 24 5 chr4 71667744 71669739 -83960381 + MusHAL1 LINE L1 4 2036 -1317 2 1131 477 302 55 64 chr4 71669739 71669941 -83960179 - RLTR31B_Mm LTR ERVK 0 557 358 2 1131 243 172 0 65 chr4 71669935 71669997 -83960123 + RLTR9D LTR ERVK 346 403 0 2 1131 4930 66 9 64 chr4 71670053 71670748 -83959372 + MusHAL1 LINE L1 1960 2660 -52 2 1131 1127 102 0 0 chr4 71670748 71670895 -83959225 + B1_Mus1 SINE Alu 1 147 -1 2 1131 4930 66 9 64 chr4 71670895 71670996 -83959124 + MusHAL1 LINE L1 2661 2712 0 2 1131 603 260 45 10 chr4 71671035 71671241 -83958879 - MMERGLN-int LTR ERV1 -2378 5178 5009 2 1131 1773 217 114 107 chr4 71671258 71672173 -83957947 - RMER17B LTR ERVK 0 908 2 2 1131 487 314 5 0 chr4 71672187 71672378 -83957742 - RLTR6-int LTR ERV1 -2622 5156 4965 2 1131 325 339 35 55 chr4 71672684 71672974 -83957146 - RLTR6-int LTR ERV1 -4368 3410 3127 2 1131 651 216 98 42 chr4 71673312 71673505 -83956615 - ORR1D1 LTR MaLR -13 361 158 2 1131 225 178 0 0 chr4 71673508 71673553 -83956567 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1131 207 162 0 0 chr4 71673556 71673593 -83956527 + GA-rich Low_complexity Low_complexity 3 39 0 2 1131 1015 168 11 21 chr4 71673593 71673782 -83956338 - ORR1D1 LTR MaLR -187 187 1 2 1131 219 300 0 0 chr4 71675806 71675856 -83954264 - ID4 SINE ID -20 63 14 2 1131 4938 50 9 6 chr4 71676255 71676895 -83953225 - L1Md_F3 LINE L1 0 6584 5943 2 1131 750 259 16 11 chr4 71677408 71677599 -83952521 + B3A SINE B2 4 195 -3 2 1131 21 0 0 0 chr4 71677646 71677667 -83952453 + AT_rich Low_complexity Low_complexity 1 21 0 2 1131 254 254 95 63 chr4 71677949 71678075 -83952045 - MIR SINE MIR -111 151 22 2 1131 2563 230 25 14 chr4 71678432 71679000 -83951120 + Lx5 LINE L1 6477 7050 0 2 1131 1040 253 60 17 chr4 71679266 71679567 -83950553 - MTE2b LTR MaLR -31 348 35 2 1131 469 239 0 0 chr4 71679560 71679648 -83950472 - MTE2b LTR MaLR -289 90 3 2 1131 1329 100 0 21 chr4 71680099 71680293 -83949827 - B2_Mm2 SINE B2 -3 192 3 2 1131 390 321 36 36 chr4 71680454 71680593 -83949527 - MER5A DNA MER1_type -3 186 48 2 1131 7391 97 6 6 chr4 71681230 71682715 -83947405 - L1_Mus4 LINE L1 -1 6635 5148 2 1131 1662 185 3 0 chr4 71682712 71683036 -83947084 + L1_Mm LINE L1 4822 5146 -737 2 1131 21 0 0 0 chr4 71684317 71684338 -83945782 + AT_rich Low_complexity Low_complexity 1 21 0 2 1131 378 279 43 22 chr4 71684482 71684621 -83945499 + L1_Mur3 LINE L1 497 638 -7090 2 1131 6039 180 36 49 chr4 71684622 71685824 -83944296 + L1_Mur3 LINE L1 1825 3030 -2850 2 1131 2727 77 73 87 chr4 71685824 71686306 -83943814 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1131 6039 180 36 49 chr4 71686306 71686728 -83943392 + L1_Mur3 LINE L1 3031 3427 -2453 2 1131 1455 236 103 7 chr4 71686750 71687159 -83942961 + Lx6 LINE L1 6844 7291 -169 2 1131 274 309 36 0 chr4 71687233 71687343 -83942777 + Lx7 LINE L1 7208 7321 -375 2 1131 32 43 0 0 chr4 71687534 71687580 -83942540 + AT_rich Low_complexity Low_complexity 1 46 0 2 1131 657 69 0 0 chr4 71687583 71687670 -83942450 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 1131 1321 50 0 22 chr4 71687670 71687854 -83942266 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 1131 381 58 0 0 chr4 71688506 71688558 -83941562 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1131 1657 45 40 22 chr4 71688966 71689192 -83940928 - LSU-rRNA_Hsa rRNA rRNA -1124 3911 3682 2 1131 407 348 96 48 chr4 71689298 71689715 -83940405 + L1M5 LINE L1 5322 5758 -366 2 1131 215 225 0 0 chr4 71689852 71689892 -83940228 + GA-rich Low_complexity Low_complexity 2 41 0 2 1131 955 239 93 7 chr4 71690222 71690492 -83939628 + Lx8 LINE L1 7173 7465 -8 2 1131 477 62 0 0 chr4 71691432 71691497 -83938623 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1131 3972 82 67 0 chr4 71691530 71692131 -83937989 + Lx3_Mus LINE L1 6349 6989 -20 2 1131 207 0 0 0 chr4 71692133 71692156 -83937964 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1131 614 275 16 27 chr4 71692401 71692584 -83937536 + B3A SINE B2 2 182 -16 2 1131 211 379 34 14 chr4 71692639 71692786 -83937334 + L4 LINE RTE 700 849 -1180 2 1131 242 370 85 12 chr4 71692991 71693155 -83936965 - MIRb SINE MIR -32 236 61 2 1131 22 0 0 0 chr4 71693208 71693230 -83936890 + AT_rich Low_complexity Low_complexity 1 22 0 2 1131 854 146 78 95 chr4 71693230 71693472 -83936648 + Lx LINE L1 6417 6654 0 2 1131 3019 263 61 23 chr4 71693545 71694493 -83935627 + RMER1C Other Other 256 1341 -1 2 1131 1256 246 101 9 chr4 71694584 71694920 -83935200 - ORR1D2 LTR MaLR -3 367 1 2 1131 2760 259 42 56 chr4 71694920 71695281 -83934839 - ORR1D2-int LTR MaLR 0 1370 997 2 1131 684 67 0 0 chr4 71695281 71695371 -83934749 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1131 2760 259 42 56 chr4 71695371 71695811 -83934309 - ORR1D2-int LTR MaLR -374 996 580 2 1131 1011 284 48 32 chr4 71695840 71696149 -83933971 - ORR1D2-int LTR MaLR -1052 318 5 2 141 1047 290 75 18 chr4 71696155 71696497 -83933623 - ORR1D2 LTR MaLR -2 377 1 2 1132 573 203 17 0 chr4 71697006 71697124 -83932996 + ORR1D-int LTR MaLR 351 470 -900 2 1132 21 0 0 0 chr4 71697139 71697160 -83932960 + AT_rich Low_complexity Low_complexity 1 21 0 2 1132 842 259 54 62 chr4 71697307 71697652 -83932468 - Lx6 LINE L1 -26 7434 7138 2 1132 585 124 0 0 chr4 71697652 71697749 -83932371 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1132 653 288 107 76 chr4 71697749 71697813 -83932307 - Lx6 LINE L1 -347 6703 6629 2 1132 13919 155 23 3 chr4 71697995 71701872 -83928248 - Lx2 LINE L1 -1 6996 3036 2 1132 903 250 4 9 chr4 71701870 71702100 -83928020 - L1VL4 LINE L1 -5917 385 157 2 1132 21 0 0 0 chr4 71702223 71702244 -83927876 + AT_rich Low_complexity Low_complexity 1 21 0 2 1132 198 103 0 0 chr4 71703339 71703368 -83926752 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 1132 699 352 74 12 chr4 71703384 71703709 -83926411 - MER2 DNA MER2_type 0 345 1 2 1132 202 329 25 12 chr4 71704250 71704330 -83925790 - L2 LINE L2 -830 2589 2509 2 1132 240 350 126 48 chr4 71704597 71704804 -83925316 - MLT1H1 LTR MaLR -3 576 354 2 1132 338 319 11 0 chr4 71704881 71704972 -83925148 - MLT1H1 LTR MaLR -461 94 3 2 1132 562 332 45 17 chr4 71705895 71706119 -83924001 - B4A SINE B4 -40 252 27 2 1132 5450 31 78 0 chr4 71706658 71707325 -83922795 - L1Md_A LINE L1 0 6582 5864 2 1132 977 203 143 4 chr4 71707754 71707991 -83922129 - RMER15 LTR ERVL 0 575 306 2 1132 397 175 7 7 chr4 71709111 71709249 -83920871 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1132 551 267 0 129 chr4 71709363 71709587 -83920533 - B3A SINE B2 -3 195 1 2 1132 219 288 16 41 chr4 71711413 71711536 -83918584 + A-rich Low_complexity Low_complexity 2 121 0 2 1132 401 0 20 0 chr4 71711721 71711770 -83918350 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 2 1132 318 351 95 6 chr4 71711770 71711939 -83918181 + HAL1-3A_ME LINE L1 2284 2467 -391 2 1132 493 277 0 0 chr4 71712549 71712661 -83917459 - PB1D10 SINE Alu -1 116 5 2 1132 407 243 159 0 chr4 71715247 71715354 -83914766 - ID_B1 SINE B4 0 224 101 2 1132 225 319 0 14 chr4 71715356 71715426 -83914694 - ID4_ SINE ID -13 70 2 2 1132 908 9 0 95 chr4 71715523 71715649 -83914471 + ORR1A0 LTR MaLR 233 346 0 2 1132 13577 52 26 1 chr4 71715649 71717397 -83912723 + ORR1A0-int LTR MaLR 1 1792 0 2 1132 2793 40 0 82 chr4 71717397 71717774 -83912346 + ORR1A0 LTR MaLR 1 346 0 2 1132 182 325 39 0 chr4 71717778 71717855 -83912265 + L2c LINE L2 3303 3382 -5 2 1132 513 356 73 46 chr4 71717899 71718202 -83911918 + MLT1A0 LTR MaLR 1 311 -54 2 1132 763 309 8 53 chr4 71718272 71718538 -83911582 - B4A SINE B4 -38 254 1 2 1132 246 300 0 12 chr4 71718826 71718907 -83911213 + A-rich Low_complexity Low_complexity 4 83 0 2 1132 454 284 0 0 chr4 71718919 71719021 -83911099 + PB1D10 SINE Alu 6 107 -10 2 1132 474 157 0 0 chr4 71719681 71719764 -83910356 + GA-rich Low_complexity Low_complexity 3 85 0 2 1132 402 21 0 0 chr4 71719866 71719913 -83910207 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1132 613 273 0 8 chr4 71720226 71720355 -83909765 + RSINE1 SINE B4 2 129 -36 2 1132 26 50 0 0 chr4 71720364 71720404 -83909716 + AT_rich Low_complexity Low_complexity 1 40 0 2 1132 21 0 0 0 chr4 71720805 71720826 -83909294 + AT_rich Low_complexity Low_complexity 1 21 0 2 1132 232 270 67 13 chr4 71720977 71721052 -83909068 + PB1D10 SINE Alu 33 111 -6 2 1132 207 0 0 0 chr4 71721299 71721322 -83908798 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1132 394 315 57 101 chr4 71721774 71722021 -83908099 - L2a LINE L2 -6 3420 3185 2 1132 202 61 61 0 chr4 71723468 71723501 -83906619 + (AGATG)n Simple_repeat Simple_repeat 3 37 0 2 1132 246 143 0 0 chr4 71724219 71724268 -83905852 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1132 527 288 0 35 chr4 71724270 71724385 -83905735 - B1_Mur1 SINE Alu 0 149 39 2 1132 1561 186 52 85 chr4 71724541 71724928 -83905192 + ORR1D1 LTR MaLR 1 374 0 2 1132 249 328 167 8 chr4 71725081 71725213 -83904907 - Arthur1B DNA Tip100 -958 267 115 2 1132 320 301 205 19 chr4 71725659 71725815 -83904305 + MIRb SINE MIR 67 251 -17 2 1132 290 356 44 74 chr4 71726022 71726292 -83903828 - MLT1K LTR MaLR -4 591 330 2 1132 7759 37 4 1 chr4 71726362 71727528 -83902592 + L1Md_F2 LINE L1 5449 6582 0 3 1132 510 17 0 0 chr4 71727571 71727630 -83902490 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1132 311 256 53 44 chr4 71728346 71728455 -83901665 + B1F1 SINE Alu 7 115 -5 3 1132 252 0 0 0 chr4 71729261 71729289 -83900831 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1132 2183 161 34 8 chr4 71729295 71729678 -83900442 - ORR1B1 LTR MaLR 0 394 2 3 1132 234 0 0 0 chr4 71730019 71730045 -83900075 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1132 414 57 0 0 chr4 71730662 71730715 -83899405 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1132 297 270 0 0 chr4 71731114 71731177 -83898943 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 3 1132 260 274 178 0 chr4 71731323 71731396 -83898724 + PB1D10 SINE Alu 27 112 -5 3 1132 403 260 128 16 chr4 71732059 71732184 -83897936 - MER2 DNA MER2_type -7 338 200 3 1132 247 286 74 74 chr4 71732214 71732335 -83897785 - B1F1 SINE Alu 0 149 29 3 1132 450 282 77 41 chr4 71732284 71732480 -83897640 + MT2A LTR ERVL 5 207 -326 3 1132 21 36 0 0 chr4 71733204 71733232 -83896888 + AT_rich Low_complexity Low_complexity 1 28 0 3 1132 263 326 70 0 chr4 71734729 71734815 -83895305 - B3A SINE B2 -21 177 86 3 1132 36330 30 1 0 chr4 71734964 71741834 -83888286 - L1Md_T LINE L1 0 6585 1 3 1132 293 229 10 40 chr4 71742588 71742688 -83887432 + CT-rich Low_complexity Low_complexity 1 97 0 3 1132 238 320 174 13 chr4 71744446 71744744 -83885376 + LTR82B Low_complexity ERVL 158 503 -327 3 1132 426 39 0 0 chr4 71744836 71744888 -83885232 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1132 232 321 139 40 chr4 71745106 71745307 -83884813 - MLT1H LTR MaLR -215 334 114 3 1132 266 307 78 63 chr4 71745455 71745660 -83884460 - Charlie7 DNA MER1_type -1980 632 425 3 1132 557 270 87 49 chr4 71746433 71746698 -83883422 - L1MC1 LINE L1 -200 6133 5859 3 1132 929 290 87 59 chr4 71746838 71747227 -83882893 - MLT2B4 LTR ERVL -156 400 1 3 1132 493 224 31 36 chr4 71747227 71747421 -83882699 - L1MC1 LINE L1 -577 5767 5520 3 1132 1379 89 5 0 chr4 71747573 71747763 -83882357 - B2_Mm1a SINE B2 -2 191 1 3 1132 555 271 88 6 chr4 71747815 71747986 -83882134 - Tigger5 DNA MER2_type -36 2370 2186 3 1132 359 305 146 44 chr4 71747985 71748148 -83881972 - Tigger5 DNA MER2_type -2098 308 126 3 1132 579 289 111 70 chr4 71748148 71748490 -83881630 + ORR1E LTR MaLR 1 356 -3 3 1132 359 305 146 44 chr4 71748490 71748600 -83881520 - Tigger5 DNA MER2_type -2281 125 7 3 1132 32185 70 1 16 chr4 71749181 71754366 -83875754 + L1Md_F2 LINE L1 487 5586 -297 3 1132 8097 49 1 3 chr4 71754366 71755360 -83874760 + L1Md_F2 LINE L1 5587 6578 -4 3 1132 333 289 43 24 chr4 71755443 71755560 -83874560 + PB1D10 SINE Alu 1 118 -31 3 1132 195 104 20 40 chr4 71755687 71755737 -83874383 + (CAA)n Simple_repeat Simple_repeat 2 50 0 3 1132 452 220 56 46 chr4 71756507 71756642 -83873478 - MT2A LTR ERVL -454 130 4 3 1132 522 203 29 7 chr4 71756645 71756784 -83873336 - MERVL_2A-int LTR ERVL 0 5761 5620 3 1132 232 222 0 0 chr4 71756797 71756851 -83873269 - ORR1A3-int LTR MaLR -1346 617 564 3 1132 946 161 14 33 chr4 71756851 71757063 -83873057 - MERVL_2A-int LTR ERVL -139 5622 5415 3 1132 14749 202 84 32 chr4 71757130 71760035 -83870085 - Lx6 LINE L1 -695 6355 3201 3 1132 2768 67 0 0 chr4 71760035 71760381 -83869739 + ORR1A1 LTR MaLR 1 346 0 3 1132 14749 189 75 35 chr4 71760381 71761786 -83868334 - Lx6 LINE L1 -2677 3200 1836 3 1132 778 223 33 5 chr4 71761808 71762020 -83868100 - Lx6 LINE L1 -6622 1106 889 3 1132 10745 186 55 3 chr4 71762519 71764684 -83865436 - MERVL_2A-int LTR ERVL -577 5184 2908 3 1132 2259 187 102 46 chr4 71764694 71765370 -83864750 - MERVL_2A-int LTR ERVL -3080 2681 1968 3 1132 322 183 22 109 chr4 71765371 71765463 -83864657 - MTC LTR MaLR -102 319 236 3 1132 3220 40 8 12 chr4 71765483 71765884 -83864236 + L1_Mus1 LINE L1 6169 6567 0 3 1132 665 160 8 0 chr4 71765900 71766019 -83864101 - MTC LTR MaLR -301 120 1 3 1132 745 186 0 8 chr4 71766068 71766198 -83863922 + B1_Mus2 SINE Alu 19 147 0 3 1132 645 186 0 48 chr4 71766238 71766362 -83863758 - MT2A LTR ERVL -415 118 1 3 1132 374 269 26 0 chr4 71767348 71767426 -83862694 + PB1D7 SINE Alu 6 85 -35 3 1132 214 162 0 26 chr4 71767561 71767599 -83862521 + GA-rich Low_complexity Low_complexity 3 39 0 3 1132 1468 196 169 116 chr4 71768125 71768179 -83861941 - MT2A LTR ERVL 0 533 462 3 1132 279 0 0 0 chr4 71768179 71768210 -83861910 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1132 1468 196 169 116 chr4 71768210 71768657 -83861463 - MT2A LTR ERVL -72 461 5 3 1132 1846 157 96 9 chr4 71769263 71769601 -83860519 + ORR1B2 LTR MaLR 1 376 -3 3 1132 234 62 0 0 chr4 71769797 71769829 -83860291 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 3 1132 21 36 0 0 chr4 71770563 71770591 -83859529 + AT_rich Low_complexity Low_complexity 1 28 0 3 1132 796 165 14 14 chr4 71771133 71771274 -83858846 + B1_Mur4 SINE Alu 10 150 0 3 1132 383 247 119 17 chr4 71771489 71771733 -83858387 + L1MC LINE L1 2771 3036 -3110 3 1132 432 262 131 55 chr4 71771901 71772305 -83857815 + L1_Rod LINE L1 1446 1880 -3967 3 1132 891 247 143 88 chr4 71772310 71772674 -83857446 + RLTR18B LTR ERVK 7 390 -122 3 1132 1576 246 82 70 chr4 71772680 71772966 -83857154 + Lx8 LINE L1 2710 2990 -2890 3 1132 393 22 0 0 chr4 71772966 71773012 -83857108 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 3 1132 1576 246 82 70 chr4 71773012 71773048 -83857072 + Lx8 LINE L1 2991 3007 -2873 3 1132 270 106 0 0 chr4 71773048 71773095 -83857025 + (CAAG)n Simple_repeat Simple_repeat 2 48 0 3 1132 1576 246 82 70 chr4 71773095 71773761 -83856359 + Lx8 LINE L1 3008 3711 -2169 3 1132 4148 189 53 63 chr4 71773782 71774681 -83855439 - RMER19B LTR ERVK -12 890 1 3 1132 5461 257 55 41 chr4 71774681 71777110 -83853010 + Lx8 LINE L1 3713 6186 -1287 3 1132 215 301 178 0 chr4 71778439 71778512 -83851608 + B1F1 SINE Alu 11 96 -53 3 1132 22 0 0 0 chr4 71779230 71779252 -83850868 + AT_rich Low_complexity Low_complexity 1 22 0 3 1132 779 101 13 110 chr4 71779840 71779995 -83850125 - L1Md_F3 LINE L1 -3 6581 6442 3 1132 358 336 5 94 chr4 71780018 71780202 -83849918 - B4A SINE B4 -126 166 2 3 1132 397 297 151 67 chr4 71780312 71780550 -83849570 + B4A SINE B4 3 260 -32 3 1132 775 297 142 42 chr4 71781902 71782251 -83847869 + MTE2a LTR MaLR 26 404 -15 3 1132 350 283 0 16 chr4 71782469 71782573 -83847547 + PB1D7 SINE Alu 4 100 -49 3 1132 229 82 0 39 chr4 71782693 71782744 -83847376 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1132 562 241 123 6 chr4 71782794 71782965 -83847155 - Lx7 LINE L1 -383 7313 7123 3 1132 425 50 17 0 chr4 71783207 71783267 -83846853 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1132 423 0 0 0 chr4 71784303 71784350 -83845770 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1132 249 33 0 0 chr4 71784392 71784422 -83845698 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1132 182 162 108 0 chr4 71785188 71785225 -83844895 + MIRm SINE MIR 113 153 -123 3 1132 916 139 109 46 chr4 71787799 71787973 -83842147 + B2_Mm2 SINE B2 1 185 -10 3 1132 451 282 157 6 chr4 71788028 71788206 -83841914 + B3 SINE B2 5 209 -7 3 1132 253 225 25 12 chr4 71788512 71788593 -83841527 + L1MC2 LINE L1 6263 6344 0 3 1132 373 282 0 0 chr4 71789598 71789676 -83840444 - ID4_ SINE ID -5 78 1 3 1132 334 305 9 19 chr4 71789678 71789785 -83840335 - PB1D10 SINE Alu -6 111 6 3 1132 553 271 70 116 chr4 71790170 71790454 -83839666 - MTE2a LTR MaLR -9 370 100 3 1132 260 217 42 28 chr4 71791339 71791410 -83838710 + PB1D9 SINE Alu 33 104 -16 3 1132 222 150 0 0 chr4 71791539 71791579 -83838541 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 3 1132 194 0 0 37 chr4 71792155 71792182 -83837938 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1132 861 319 84 82 chr4 71793886 71794432 -83835688 + MLT2B3 LTR ERVL 1 547 -7 3 1132 3358 51 5 15 chr4 71794747 71795147 -83834973 - MTA_Mm LTR MaLR 0 396 1 3 1132 262 259 70 61 chr4 71795176 71795241 -83834879 + MER34A LTR ERV1 448 519 -52 3 1132 1347 176 14 5 chr4 71795241 71795464 -83834656 + URR1B DNA MER1_type 1 225 0 3 1132 262 259 70 61 chr4 71795464 71795513 -83834607 + MER34A LTR ERV1 520 563 -8 3 1132 186 71 0 0 chr4 71799551 71799579 -83830541 + (CAG)n Simple_repeat Simple_repeat 1 28 0 3 1132 241 26 53 0 chr4 71800280 71800318 -83829802 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1132 258 32 0 0 chr4 71800370 71800401 -83829719 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 3 1132 242 309 20 49 chr4 71801654 71801756 -83828364 - PB1D10 SINE Alu -9 108 10 3 1132 274 221 51 25 chr4 71802601 71802680 -83827440 - ID SINE ID -142 82 2 3 1132 508 268 160 21 chr4 71803415 71803602 -83826518 + ID_B1 SINE B4 1 213 -11 3 1132 419 259 57 89 chr4 71803602 71803759 -83826361 + B4A SINE B4 1 152 -140 3 1132 332 310 10 10 chr4 71803712 71803813 -83826307 + PB1D9 SINE Alu 20 120 0 3 1132 1150 66 0 0 chr4 71803821 71803958 -83826162 + B1_Mus1 SINE Alu 3 139 -9 3 1132 255 61 0 0 chr4 71803970 71804003 -83826117 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 1132 490 247 78 96 chr4 71804307 71804473 -83825647 + ORR1D2 LTR MaLR 5 167 -203 3 1132 246 280 108 19 chr4 71805659 71805795 -83824325 + MIRb SINE MIR 111 260 -2 3 1132 347 264 30 13 chr4 71805912 71806027 -83824093 - ID4 SINE ID -33 119 5 3 1132 237 295 49 0 chr4 71806038 71806099 -83824021 - PB1D10 SINE Alu -13 104 41 3 1132 943 134 70 6 chr4 71808040 71808198 -83821922 + Lx4A LINE L1 6888 7055 -3 3 1132 546 16 0 0 chr4 71808868 71808931 -83821189 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1132 235 351 40 0 chr4 71809237 71809311 -83820809 + ID SINE ID 12 88 -136 3 1132 702 249 23 107 chr4 71809784 71810000 -83820120 + B3A SINE B2 1 198 0 3 1132 803 301 52 19 chr4 71810034 71810301 -83819819 + B4A SINE B4 1 276 -16 3 1132 286 234 160 0 chr4 71811281 71811375 -83818745 + PB1D10 SINE Alu 9 117 0 3 1132 884 229 69 5 chr4 71813199 71813401 -83816719 + B3 SINE B2 2 216 0 3 1132 629 222 95 0 chr4 71813999 71814125 -83815995 - RSINE1 SINE B4 -25 140 3 3 1132 1587 58 16 0 chr4 71814154 71814342 -83815778 + B2_Mm2 SINE B2 2 192 -3 3 1132 544 226 210 13 chr4 71814574 71814731 -83815389 + B3 SINE B2 13 200 -16 3 1132 440 263 2 13 chr4 71814832 71814938 -83815182 + B1F SINE Alu 4 108 -12 4 1132 251 254 109 33 chr4 71815452 71815635 -83814485 + Charlie1a DNA MER1_type 1054 1250 -205 4 1132 270 213 53 0 chr4 71815689 71815764 -83814356 + Charlie1a DNA MER1_type 1331 1409 -46 4 1132 360 0 0 0 chr4 71817304 71817344 -83812776 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1132 336 267 13 13 chr4 71817349 71817425 -83812695 + RSINE1 SINE B4 28 103 -62 4 1132 378 0 0 0 chr4 71817430 71817472 -83812648 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1132 704 94 0 9 chr4 71817499 71817606 -83812514 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 4 1132 292 267 93 0 chr4 71817626 71817712 -83812408 + BC1_Mm scRNA scRNA 8 101 -51 4 1132 392 194 0 20 chr4 71819466 71819566 -83810554 + GA-rich Low_complexity Low_complexity 1 98 0 4 1132 24 32 0 0 chr4 71821906 71821937 -83808183 + AT_rich Low_complexity Low_complexity 1 31 0 4 1132 188 255 39 19 chr4 71822155 71822207 -83807913 - L3 LINE CR1 -4331 158 106 4 1132 682 268 97 22 chr4 71823349 71823670 -83806450 + L1MA9 LINE L1 5388 5732 -559 4 1132 365 380 16 0 chr4 71823758 71823879 -83806241 - ID_B1 SINE B4 -101 123 1 4 1132 812 216 169 44 chr4 71823900 71824219 -83805901 + L1MA9 LINE L1 5953 6311 -1 4 1132 524 256 126 16 chr4 71824457 71824711 -83805409 + L1MB8 LINE L1 5415 5696 -488 4 1132 376 232 0 12 chr4 71824722 71824805 -83805315 + RSINE1 SINE B4 30 111 -54 4 1132 298 282 25 8 chr4 71824807 71824925 -83805195 + L1MB8 LINE L1 5698 5817 -361 4 1132 548 346 19 0 chr4 71824946 71825102 -83805018 + ID_B1 SINE B4 14 172 -52 4 1132 313 315 45 0 chr4 71825027 71825116 -83805004 + PB1D10 SINE Alu 17 109 -8 4 1132 280 378 46 30 chr4 71825115 71825246 -83804874 + B4 SINE B4 77 209 -83 4 1132 536 226 0 28 chr4 71825145 71825254 -83804866 + B1_Mur1 SINE Alu 23 128 -21 4 1132 22 35 0 0 chr4 71825298 71825327 -83804793 + AT_rich Low_complexity Low_complexity 1 29 0 4 1132 300 294 175 0 chr4 71825340 71825500 -83804620 + L1MB8 LINE L1 5991 6178 0 4 1132 244 281 48 77 chr4 71825840 71825944 -83804176 + PB1D7 SINE Alu 1 101 -19 4 1132 194 280 0 0 chr4 71825952 71826002 -83804118 - L2 LINE L2 -480 2939 2890 4 1132 624 230 21 41 chr4 71827071 71827216 -83802904 + B1_Mur1 SINE Alu 3 144 -5 4 1133 370 238 0 24 chr4 71828368 71828450 -83801670 + ID4_ SINE ID 4 83 0 4 1133 288 53 0 0 chr4 71830618 71830656 -83799464 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1133 273 291 11 55 chr4 71831304 71831374 -83798746 + B1_Mur4 SINE Alu 43 111 -39 4 1133 405 0 0 0 chr4 71831374 71831419 -83798701 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1133 507 33 0 0 chr4 71831419 71831479 -83798641 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1133 273 291 11 55 chr4 71831479 71831498 -83798622 + B1_Mur4 SINE Alu 112 128 -22 4 1133 773 224 53 48 chr4 71832019 71832207 -83797913 + B3 SINE B2 28 216 0 4 1133 700 274 143 7 chr4 71832457 71832736 -83797384 + L1MA5 LINE L1 5529 5845 -455 4 1133 387 0 0 0 chr4 71832737 71832780 -83797340 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1133 5410 230 123 22 chr4 71833016 71833670 -83796450 + Lx7 LINE L1 3881 4633 -1247 4 1133 180 97 0 0 chr4 71833670 71833701 -83796419 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1133 5410 262 122 27 chr4 71833701 71835548 -83794572 + Lx7 LINE L1 4634 6623 -1073 4 1133 1859 208 30 36 chr4 71835599 71835992 -83794128 + MTD LTR MaLR 21 411 -8 4 1133 186 43 0 0 chr4 71836010 71836033 -83794087 + (TATTG)n Simple_repeat Simple_repeat 1 23 0 4 1133 1381 234 74 35 chr4 71836033 71836504 -83793616 + Lx7 LINE L1 6648 7179 -517 4 1133 300 286 94 31 chr4 71836624 71836783 -83793337 + Lx7 LINE L1 7199 7367 -329 4 1133 450 281 61 9 chr4 71838022 71838137 -83791983 + B3 SINE B2 1 121 -95 4 1133 334 124 17 60 chr4 71838222 71838302 -83791818 - B1_Mus1 SINE Alu -1 119 38 4 1133 1121 74 40 35 chr4 71838305 71838500 -83791620 + Lx3B LINE L1 5772 5966 -1007 4 1133 2883 141 40 0 chr4 71838497 71838950 -83791170 - L1_Mus3 LINE L1 -955 4928 4458 4 1133 8004 89 9 2 chr4 71838942 71840610 -83789510 + L1_Mus3 LINE L1 4939 6616 -22 4 1133 297 0 0 0 chr4 71840747 71840780 -83789340 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1133 6338 115 55 10 chr4 71840797 71841765 -83788355 + Lx3B LINE L1 5958 6968 -5 4 1133 646 158 30 0 chr4 71842480 71842644 -83787476 + (TA)n Simple_repeat Simple_repeat 1 169 0 4 1133 188 153 0 48 chr4 71842724 71842786 -83787334 + T-rich Low_complexity Low_complexity 2 60 0 4 1133 1218 75 0 0 chr4 71842787 71842934 -83787186 - B1_Mus1 SINE Alu 0 148 2 4 1133 213 231 0 0 chr4 71843298 71843337 -83786783 + polypurine Low_complexity Low_complexity 4 42 0 4 1133 180 77 0 0 chr4 71844032 71844058 -83786062 + (CACCAT)n Simple_repeat Simple_repeat 4 29 0 4 1133 231 36 0 0 chr4 71848022 71848050 -83782070 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1133 253 68 22 22 chr4 71848769 71848814 -83781306 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 4 1133 243 337 89 0 chr4 71848848 71848949 -83781171 + ID_B1 SINE B4 91 200 -24 4 1133 437 326 47 105 chr4 71849858 71850115 -83780005 - B4A SINE B4 -6 286 45 4 1133 311 256 111 0 chr4 71850394 71850484 -83779636 + ID_B1 SINE B4 106 205 -19 4 1133 310 252 279 36 chr4 71850957 71851068 -83779052 + ID_B1 SINE B4 80 217 -7 4 1133 297 324 45 65 chr4 71851219 71851278 -83778842 + MT2B2 LTR ERVL 114 169 -415 4 1133 427 252 146 0 chr4 71851278 71851381 -83778739 + B1F2 SINE Alu 1 118 -31 4 1133 314 209 162 15 chr4 71853223 71853291 -83776829 + ID4_ SINE ID 2 79 -4 4 1133 423 237 67 33 chr4 71854037 71854217 -83775903 + B3A SINE B2 27 213 -3 4 1133 482 243 25 106 chr4 71864562 71864723 -83765397 - B1F2 SINE Alu -1 148 1 4 1133 442 180 575 0 chr4 71864945 71865084 -83765036 - ID_B1 SINE B4 -3 221 3 4 1133 404 254 111 37 chr4 71865096 71865231 -83764889 - B1F SINE Alu -3 146 2 4 1133 284 48 0 23 chr4 71865231 71865274 -83764846 + (GTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1133 615 247 141 58 chr4 71866732 71866938 -83763182 + ID_B1 SINE B4 2 224 0 4 1133 21 0 0 0 chr4 71867343 71867364 -83762756 + AT_rich Low_complexity Low_complexity 1 21 0 4 1133 829 152 49 28 chr4 71867481 71867623 -83762497 - B1_Mur4 SINE Alu 0 150 6 4 1133 235 328 53 23 chr4 71867809 71867940 -83762180 + B4 SINE B4 70 204 -88 4 1133 375 295 17 26 chr4 71867828 71867943 -83762177 + B1F1 SINE Alu 5 118 -31 4 1133 383 362 18 30 chr4 71868097 71868262 -83761858 + RSINE1 SINE B4 3 165 0 4 1133 687 236 35 100 chr4 71868307 71868538 -83761582 - B3 SINE B2 0 216 1 4 1133 266 201 0 0 chr4 71868613 71868678 -83761442 + ID4 SINE ID 32 96 -56 4 1133 1644 53 5 0 chr4 71868682 71868872 -83761248 + B2_Mm1t SINE B2 2 192 -1 4 1133 218 231 2 35 chr4 71868919 71868977 -83761143 + PB1D10 SINE Alu 2 60 -89 4 1133 364 329 49 7 chr4 71869375 71869519 -83760601 + RSINE1 SINE B4 12 161 -4 4 1133 22 0 0 0 chr4 71869544 71869566 -83760554 + AT_rich Low_complexity Low_complexity 1 22 0 4 1133 819 215 129 16 chr4 71869628 71869822 -83760298 - B3 SINE B2 0 216 1 4 1133 1236 55 0 14 chr4 71870031 71870178 -83759942 + B1_Mm SINE Alu 2 146 -1 4 1133 360 0 0 0 chr4 71870646 71870686 -83759434 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1133 576 0 0 0 chr4 71870902 71870966 -83759154 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1133 368 71 18 0 chr4 71870968 71871024 -83759096 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1133 571 260 84 0 chr4 71871030 71871130 -83758990 - B3A SINE B2 -31 167 56 4 1133 186 43 0 0 chr4 71871130 71871153 -83758967 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1133 571 260 84 0 chr4 71871153 71871206 -83758914 - B3A SINE B2 -143 55 2 4 1133 185 154 26 0 chr4 71871211 71871250 -83758870 + CT-rich Low_complexity Low_complexity 1 40 0 4 1133 706 208 234 11 chr4 71871370 71871545 -83758575 - B3 SINE B2 -1 215 2 4 1133 23 54 0 0 chr4 71871558 71871595 -83758525 + AT_rich Low_complexity Low_complexity 1 37 0 4 1133 756 149 9 21 chr4 71871596 71871708 -83758412 - B1_Mus2 SINE Alu -1 148 42 4 1133 338 275 52 52 chr4 71871708 71871804 -83758316 + B1_Mm SINE Alu 2 97 -50 4 1133 204 40 0 0 chr4 71871825 71871850 -83758270 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1133 506 316 209 0 chr4 71872032 71872295 -83757825 - MER2 DNA MER2_type -2 343 26 4 1133 713 261 80 61 chr4 71872435 71872647 -83757473 + ID_B1 SINE B4 6 221 -3 4 1133 571 274 147 26 chr4 71872758 71872949 -83757171 - B3 SINE B2 0 216 3 4 1133 182 242 91 0 chr4 71873023 71873089 -83757031 + L2 LINE L2 2266 2337 -1082 4 1133 429 117 10 41 chr4 71873463 71873561 -83756559 + GA-rich Low_complexity Low_complexity 2 96 0 4 1133 582 250 88 52 chr4 71873708 71873902 -83756218 + B3 SINE B2 1 201 -15 4 1133 210 37 0 0 chr4 71874848 71874875 -83755245 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1133 846 323 57 49 chr4 71874887 71875088 -83755032 - Lx8 LINE L1 -156 7317 7120 4 1133 2484 103 0 3 chr4 71875088 71875400 -83754720 - RLTR10E LTR ERVK 0 311 1 4 1133 846 325 54 53 chr4 71875400 71875698 -83754422 - Lx8 LINE L1 -354 7119 6842 4 1133 309 197 0 0 chr4 71875698 71875769 -83754351 - Lx3A LINE L1 -8 6973 6903 4 1133 837 343 26 93 chr4 71875769 71876055 -83754065 - Lx8 LINE L1 -852 6844 6570 4 1133 389 250 107 8 chr4 71876037 71876158 -83753962 - L1_Mur3 LINE L1 -3662 2218 2086 4 1133 222 62 0 0 chr4 71876213 71876245 -83753875 + (ACTG)n Simple_repeat Simple_repeat 1 32 0 4 1133 527 263 0 110 chr4 71876245 71876389 -83753731 - B1_Mus2 SINE Alu -9 138 10 4 1133 1462 257 98 17 chr4 71876389 71876928 -83753192 - L1_Mur3 LINE L1 -3986 1894 1312 4 1133 1342 212 11 7 chr4 71877893 71878168 -83751952 + ORR1D1 LTR MaLR 1 276 -98 4 1133 365 304 0 0 chr4 71878147 71878239 -83751881 + ID_B1 SINE B4 130 221 -3 4 1133 234 197 344 0 chr4 71878323 71878384 -83751736 - ID4_ SINE ID 0 83 2 4 1133 182 293 0 0 chr4 71878979 71879020 -83751100 - MIRc SINE MIR -113 155 115 4 1133 803 213 21 0 chr4 71879587 71879728 -83750392 + B1_Mur1 SINE Alu 1 144 -5 5 1133 331 186 0 0 chr4 71880028 71880087 -83750033 + Lx9 LINE L1 7288 7346 -298 5 1133 239 200 0 54 chr4 71880230 71880304 -83749816 + L1MA5 LINE L1 6231 6300 0 5 1133 1091 262 176 20 chr4 71880344 71880702 -83749418 + MTD LTR MaLR 6 419 0 5 1133 495 315 53 20 chr4 71880834 71880986 -83749134 + RSINE1 SINE B4 2 158 -7 5 1133 234 242 21 32 chr4 71881026 71881120 -83749000 + CT-rich Low_complexity Low_complexity 1 93 0 5 1133 405 300 85 7 chr4 71881191 71881332 -83748788 - RMER15 LTR ERVL -87 488 337 5 1133 255 213 0 41 chr4 71881357 71881406 -83748714 - Lx8 LINE L1 -269 7204 7158 5 1133 2039 304 70 96 chr4 71881405 71881603 -83748517 - Lx8 LINE L1 -707 6766 6583 5 1133 1321 20 0 20 chr4 71881603 71881753 -83748367 - B1_Mm SINE Alu 0 147 1 5 1133 2039 281 55 81 chr4 71881753 71883214 -83746906 - Lx8 LINE L1 -891 6582 5128 5 1133 17164 171 50 28 chr4 71883243 71887583 -83742537 - Lx5 LINE L1 -8 7042 2579 5 1133 2562 173 21 5 chr4 71887592 71888271 -83741849 - Lx5 LINE L1 -4214 1663 926 5 1133 359 250 0 12 chr4 71888423 71888508 -83741612 - MTC LTR MaLR 0 421 338 5 1133 232 342 75 25 chr4 71888789 71888948 -83741172 + Lx9 LINE L1 527 693 -6915 5 1133 6502 229 175 39 chr4 71888928 71890009 -83740111 + Lx9 LINE L1 2424 3801 -2046 5 1133 1327 85 0 6 chr4 71890009 71890186 -83739934 + B2_Mm2 SINE B2 2 177 -18 5 1133 6502 229 175 39 chr4 71890186 71890851 -83739269 + Lx9 LINE L1 3802 4574 -1273 5 1133 201 39 0 0 chr4 71890851 71890877 -83739243 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1133 6502 229 175 39 chr4 71890877 71891278 -83738842 + Lx9 LINE L1 4575 4963 -884 5 1133 1357 60 49 0 chr4 71891278 71891462 -83738658 + B2_Mm2 SINE B2 2 194 -1 5 1133 6502 230 141 62 chr4 71891462 71892606 -83737514 + Lx9 LINE L1 4964 6104 -1540 5 1133 408 40 0 0 chr4 71892697 71892747 -83737373 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1133 1325 89 20 25 chr4 71892778 71892974 -83737146 + B2_Mm2 SINE B2 1 195 0 5 1133 590 271 14 21 chr4 71893836 71893979 -83736141 - B1_Mur1 SINE Alu -3 146 5 5 1133 310 349 7 52 chr4 71893846 71894000 -83736120 - ID_B1 SINE B4 -13 211 65 5 1133 644 213 64 35 chr4 71894043 71894184 -83735936 + B1_Mur4 SINE Alu 6 150 0 5 1133 454 346 29 0 chr4 71894492 71894628 -83735492 - RSINE1 SINE B4 -22 143 4 5 1133 432 199 5 0 chr4 71894645 71894738 -83735382 - L1_Mur3 LINE L1 -813 5487 5358 5 1133 501 17 0 0 chr4 71895549 71895607 -83734513 + (TTTTC)n Simple_repeat Simple_repeat 4 61 0 5 1133 255 294 115 19 chr4 71895697 71895801 -83734319 - PB1 SINE Alu -3 124 11 5 1133 232 359 25 66 chr4 71895849 71896046 -83734074 - MER5A DNA MER1_type 0 189 1 5 1133 487 50 0 83 chr4 71897198 71897307 -83732813 + (TG)n Simple_repeat Simple_repeat 1 100 0 5 1133 22 56 0 0 chr4 71898235 71898271 -83731849 + AT_rich Low_complexity Low_complexity 1 36 0 5 1133 204 214 24 0 chr4 71899381 71899423 -83730697 + GA-rich Low_complexity Low_complexity 3 45 0 5 1133 1763 122 11 114 chr4 71900951 71901302 -83728818 + ORR1A4 LTR MaLR 10 324 -5 5 1133 323 279 23 0 chr4 71901569 71901655 -83728465 + PB1D10 SINE Alu 21 108 -9 5 1133 617 264 74 27 chr4 71902078 71902226 -83727894 - RSINE1 SINE B4 0 165 11 5 1133 492 191 27 54 chr4 71902468 71902579 -83727541 - PB1D9 SINE Alu -12 108 1 5 1133 396 274 114 30 chr4 71903095 71903227 -83726893 - MIR SINE MIR -105 157 15 5 1133 761 251 77 5 chr4 71904405 71904601 -83725519 - B3 SINE B2 -6 210 1 5 1133 475 301 88 28 chr4 71904621 71904828 -83725292 - B3A SINE B2 0 216 1 5 1133 351 0 0 0 chr4 71904860 71904899 -83725221 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 5 1133 603 304 0 27 chr4 71904914 71905100 -83725020 - B3A SINE B2 -16 182 2 5 1133 3704 245 82 43 chr4 71905107 71906227 -83723893 + MTD-int LTR MaLR 95 1258 0 5 1133 1477 222 90 47 chr4 71906227 71906629 -83723491 + MTD LTR MaLR 1 419 0 5 1133 241 225 22 0 chr4 71906774 71906863 -83723257 + GA-rich Low_complexity Low_complexity 2 92 0 5 1133 448 314 142 112 chr4 71907086 71907288 -83722832 - MLT1G1 LTR MaLR -3 576 354 5 1133 1437 272 27 10 chr4 71907288 71907700 -83722420 - MTD LTR MaLR 0 419 1 5 1133 448 314 142 112 chr4 71907700 71908052 -83722068 - MLT1G1 LTR MaLR -226 353 5 5 1133 1912 199 15 38 chr4 71908150 71908541 -83721579 - RLTR14 LTR ERV1 0 382 1 5 1133 255 31 0 0 chr4 71908630 71908662 -83721458 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 1133 908 236 26 0 chr4 71908663 71908858 -83721262 - B3 SINE B2 -13 203 4 5 1133 806 78 9 0 chr4 71909550 71909665 -83720455 + (TTTCC)n Simple_repeat Simple_repeat 3 118 0 5 1133 637 232 42 0 chr4 71909839 71909981 -83720139 - B1_Mur1 SINE Alu 0 149 2 5 1133 427 223 11 12 chr4 71910107 71910219 -83719901 + ID4 SINE ID 6 120 -32 5 1133 473 288 18 9 chr4 71910460 71910572 -83719548 - PB1D7 SINE Alu -6 114 2 5 1133 409 252 75 0 chr4 71910591 71910698 -83719422 - B1F SINE Alu -7 142 28 5 1133 417 321 97 0 chr4 71910969 71911134 -83718986 - MTE2a LTR MaLR 0 379 199 5 1133 349 348 96 7 chr4 71911327 71911463 -83718657 + RSINE1 SINE B4 8 155 -10 5 1133 489 17 0 0 chr4 71911463 71911521 -83718599 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1133 285 98 0 0 chr4 71911523 71911564 -83718556 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1133 415 322 195 0 chr4 71911817 71911991 -83718129 - MER63A DNA AcHobo -1 209 2 5 1133 245 235 202 34 chr4 71912349 71912468 -83717652 - MLT1H LTR MaLR -2 406 268 5 1133 308 352 98 12 chr4 71912997 71913161 -83716959 - MLT1H LTR MaLR -249 300 123 5 1133 242 289 27 35 chr4 71913882 71913986 -83716134 + MTE2b LTR MaLR 264 373 -5 5 1133 3723 204 50 56 chr4 71914017 71915021 -83715099 + L1_Mur3 LINE L1 416 1416 -4464 5 1133 1050 47 13 7 chr4 71915021 71915171 -83714949 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 5 1133 265 170 325 61 chr4 71915238 71915401 -83714719 + RLTR17 LTR ERVK 487 692 0 5 1133 3181 169 52 62 chr4 71915429 71916175 -83713945 + L1_Mur3 LINE L1 1797 2535 -3345 5 1133 7851 59 8 1 chr4 71916174 71917213 -83712907 - L1Md_F2 LINE L1 -1 6581 5536 5 1133 19318 94 36 16 chr4 71917212 71920607 -83709513 - L1Md_F2 LINE L1 -2004 3879 410 5 1133 721 198 35 36 chr4 71920596 71920793 -83709327 + L1_Mur3 LINE L1 2515 2709 -1205 5 1133 5419 186 26 18 chr4 71920806 71921303 -83708817 + L1_Mur3 LINE L1 4124 4622 -1258 5 1133 396 0 0 0 chr4 71921303 71921347 -83708773 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1133 5419 186 26 18 chr4 71921347 71921989 -83708131 + L1_Mur3 LINE L1 4623 5272 -608 5 1133 201 200 156 0 chr4 71922352 71922397 -83707723 + MIRb SINE MIR 56 107 -161 5 1133 250 208 69 0 chr4 71922398 71922470 -83707650 - Lx9 LINE L1 -48 7596 7520 5 1133 815 0 11 0 chr4 71922472 71922567 -83707553 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 5 1133 1417 224 102 18 chr4 71922587 71922987 -83707133 - Lx9 LINE L1 -196 7448 7015 5 1133 808 328 18 36 chr4 71923055 71923333 -83706787 - B4A SINE B4 -10 282 10 5 1133 352 333 68 39 chr4 71923366 71923647 -83706473 - B4A SINE B4 -1 291 3 5 1133 1411 249 73 11 chr4 71923766 71924148 -83705972 + MTD LTR MaLR 6 411 -8 5 1133 27 62 0 0 chr4 71924881 71924929 -83705191 + AT_rich Low_complexity Low_complexity 1 48 0 5 1133 21 0 0 0 chr4 71925175 71925196 -83704924 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 247 250 77 0 chr4 71925552 71925604 -83704516 - PB1 SINE Alu -3 124 69 5 1133 313 125 46 15 chr4 71925630 71925695 -83704425 + L1_Mur3 LINE L1 4627 4693 -1187 5 1133 10849 53 3 3 chr4 71925705 71927775 -83702345 - L1Md_F2 LINE L1 -12 6570 4502 5 1133 1244 243 105 74 chr4 71927789 71928346 -83701774 + RMER13A LTR ERVK 1 604 -304 5 1133 1622 207 27 0 chr4 71928534 71928867 -83701253 + L1_Mur3 LINE L1 4697 5038 -842 5 1133 240 315 18 36 chr4 71928872 71928984 -83701136 - RMER13A LTR ERVK -192 668 559 5 1133 736 255 29 5 chr4 71929100 71929309 -83700811 + L1_Mur3 LINE L1 5038 5251 -629 5 1133 861 259 123 0 chr4 71929328 71929556 -83700564 + Lx7 LINE L1 6487 6742 -954 5 1133 3863 191 76 71 chr4 71929558 71930456 -83699664 - RMER19B LTR ERVK 0 902 1 5 1133 1879 249 104 8 chr4 71930456 71930977 -83699143 + Lx7 LINE L1 6739 7309 -387 5 1133 317 329 41 48 chr4 71931722 71931869 -83698251 - RSINE1 SINE B4 -17 148 3 5 1133 523 150 126 29 chr4 71932554 71932657 -83697463 + ORR1D2 LTR MaLR 258 370 0 5 1133 1259 295 46 18 chr4 71932658 71933096 -83697024 + ORR1D2-int LTR MaLR 2 451 -919 5 1133 1017 122 0 0 chr4 71933096 71933235 -83696885 + B1_Mus1 SINE Alu 2 140 -8 5 1133 666 47 0 0 chr4 71933235 71933321 -83696799 + (GA)n Simple_repeat Simple_repeat 2 87 0 5 1133 1115 220 56 20 chr4 71933422 71933672 -83696448 + MTD LTR MaLR 161 419 0 5 1133 237 161 250 0 chr4 71933759 71933815 -83696305 + ORR1D2 LTR MaLR 289 358 -12 5 1133 603 315 12 6 chr4 71933878 71934041 -83696079 - RSINE1 SINE B4 0 165 2 5 1133 22 0 0 0 chr4 71934098 71934120 -83696000 + AT_rich Low_complexity Low_complexity 1 22 0 5 1133 7810 80 6 10 chr4 71934193 71935249 -83694871 - L1_Mus3 LINE L1 0 6638 5588 5 1133 560 307 41 55 chr4 71935264 71935699 -83694421 - L1M2 LINE L1 -3133 3010 2582 5 1133 281 257 28 62 chr4 71935757 71935902 -83694218 + L1_Mur3 LINE L1 1668 1807 -4073 5 1133 472 274 6 24 chr4 71935949 71936117 -83694003 - L1_Mur3 LINE L1 -3429 2451 2287 5 1133 5326 94 11 1 chr4 71936118 71937290 -83692830 - L1VL2 LINE L1 -2155 1460 278 5 1133 207 0 0 0 chr4 71937481 71937504 -83692616 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1133 405 0 0 0 chr4 71937506 71937551 -83692569 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1133 288 0 0 0 chr4 71937551 71937582 -83692538 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1133 201 186 23 0 chr4 71937582 71937625 -83692495 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 5 1133 1576 323 71 14 chr4 71937853 71939055 -83691065 + ERVL-B4-int LTR ERVL 923 2282 -3432 5 1133 432 0 0 0 chr4 71939187 71939235 -83690885 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1133 323 204 54 20 chr4 71939299 71939399 -83690721 - ORR1D1 LTR MaLR 0 374 226 5 1133 583 269 135 37 chr4 71939769 71940037 -83690083 - ORR1D1-int LTR MaLR -15 364 51 5 1133 372 59 0 0 chr4 71940037 71940088 -83690032 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 5 1133 583 254 21 0 chr4 71940088 71940133 -83689987 - ORR1D1-int LTR MaLR -1320 50 5 5 1133 898 247 161 45 chr4 71940136 71940471 -83689649 - ORR1D1 LTR MaLR 0 374 1 5 1133 1771 227 3 3 chr4 71941329 71941665 -83688455 - Lx5 LINE L1 -93 6957 6622 5 1133 400 326 84 22 chr4 71941669 71941848 -83688272 - ERVL-B4-int LTR ERVL -4806 908 719 6 1133 24 32 0 0 chr4 71941934 71941965 -83688155 + AT_rich Low_complexity Low_complexity 1 31 0 6 1133 1633 184 75 52 chr4 71941974 71942359 -83687761 + RMER10A LTR ERVL 49 442 0 6 1133 338 325 103 11 chr4 71943241 71943522 -83686598 - ERVL-B4-int LTR ERVL -5101 613 371 6 1133 989 263 9 119 chr4 71943753 71944172 -83685948 + RMER17C LTR ERVK 1 373 -37 6 1133 249 263 0 0 chr4 71944215 71944272 -83685848 - MT2A LTR ERVL -71 462 406 6 1133 369 318 37 0 chr4 71944484 71944591 -83685529 - MTEa LTR MaLR -260 119 9 6 1133 221 189 0 0 chr4 71944633 71944670 -83685450 - PB1D7 SINE Alu -7 113 77 6 1133 23 0 0 0 chr4 71944693 71944716 -83685404 + AT_rich Low_complexity Low_complexity 1 23 0 6 1133 644 336 51 58 chr4 71944729 71945023 -83685097 - B4A SINE B4 0 292 1 6 1133 290 269 14 56 chr4 71945023 71945085 -83685035 - PB1D10 SINE Alu -43 74 16 6 1133 259 254 167 49 chr4 71945766 71945937 -83684183 - B3 SINE B2 0 216 15 6 1133 1386 234 35 6 chr4 71947744 71948461 -83681659 + Lx7 LINE L1 888 1618 -4262 6 1133 5480 127 51 10 chr4 71948468 71950312 -83679808 + L1_Mus1 LINE L1 175 2097 -3786 6 1133 14763 106 11 4 chr4 71950312 71953370 -83676750 + L1_Mus1 LINE L1 3492 6567 0 6 1133 573 55 0 0 chr4 71953455 71953528 -83676592 + (GGA)n Simple_repeat Simple_repeat 3 75 0 6 1133 3887 218 77 19 chr4 71953528 71954702 -83675418 + Lx7 LINE L1 1615 2856 -3024 6 1133 1366 113 17 13 chr4 71954704 71954937 -83675183 + Lx2A1 LINE L1 6775 7008 0 6 1133 3827 234 26 26 chr4 71954948 71956297 -83673823 + Lx7 LINE L1 5314 6666 -1030 6 1133 869 273 65 21 chr4 71956326 71956695 -83673425 + Lx7 LINE L1 6744 7150 -546 6 1133 340 355 75 11 chr4 71956905 71957079 -83673041 - ID_B1 SINE B4 -2 222 38 6 1133 880 272 0 5 chr4 71957465 71957672 -83672448 - B3 SINE B2 -10 206 1 6 141 654 271 20 0 chr4 71958444 71958595 -83671525 - MTEb LTR MaLR -225 154 1 6 1134 498 17 0 0 chr4 71958687 71958746 -83671374 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1134 320 292 0 0 chr4 71958761 71958833 -83671287 + MTEb LTR MaLR 83 154 -225 6 1134 282 116 0 0 chr4 71958858 71958901 -83671219 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1134 435 152 0 0 chr4 71959151 71959230 -83670890 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 1134 539 15 15 0 chr4 71959238 71959306 -83670814 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 6 1134 1480 220 55 71 chr4 71959309 71959676 -83670444 - ORR1D1 LTR MaLR -8 366 6 6 1134 306 0 0 0 chr4 71959676 71959710 -83670410 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1134 453 116 0 0 chr4 71959710 71959779 -83670341 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 6 1134 202 217 14 14 chr4 71960101 71960171 -83669949 + CT-rich Low_complexity Low_complexity 6 75 0 6 1134 1380 54 0 11 chr4 71961301 71961488 -83668632 + L1Md_F2 LINE L1 6398 6582 0 6 1134 850 24 0 39 chr4 71961603 71961733 -83668387 + (TCTCCC)n Simple_repeat Simple_repeat 3 127 0 6 1134 544 256 16 0 chr4 71961762 71961891 -83668229 - ID_B1 SINE B4 -1 223 93 6 1134 318 276 195 49 chr4 71962196 71962360 -83667760 + HAL1-3A_ME LINE L1 2012 2199 -659 6 1134 210 37 0 0 chr4 71963151 71963178 -83666942 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1134 1712 273 123 2 chr4 71963178 71963757 -83666363 - Lx6 LINE L1 -35 7425 6777 6 1134 2775 218 48 8 chr4 71963752 71964887 -83665233 - Lx6 LINE L1 -986 6474 5281 6 1134 2473 238 45 52 chr4 71964929 71965054 -83665066 - RMER1B Other Other -36 1030 918 6 1134 306 0 0 0 chr4 71965054 71965088 -83665032 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 6 1134 2473 241 45 52 chr4 71965088 71965656 -83664464 - RMER1B Other Other -149 917 26 6 1134 329 331 92 0 chr4 71965658 71965800 -83664320 - RMER1B Other Other -549 517 363 6 1134 1378 190 247 23 chr4 71965829 71966266 -83663854 - Lx6 LINE L1 -578 5302 4768 6 1134 2207 279 69 32 chr4 71966435 71966827 -83663293 - Lx7 LINE L1 -647 7049 6622 6 1134 2705 153 58 12 chr4 71966827 71967331 -83662789 - RLTR11A LTR ERVK -1 527 1 6 1134 2207 279 69 32 chr4 71967331 71967749 -83662371 - Lx7 LINE L1 -1075 6621 6209 6 1134 1012 93 0 28 chr4 71967752 71967895 -83662225 - B2_Mm2 SINE B2 -55 140 2 6 1134 1323 276 13 21 chr4 71967986 71968453 -83661667 - Lx7 LINE L1 -1601 6095 5633 6 1134 459 148 68 0 chr4 71968909 71968997 -83661123 + Lx2 LINE L1 6552 6645 -352 6 1134 990 164 82 0 chr4 71968986 71969181 -83660939 + Lx2 LINE L1 6765 6975 -22 6 1134 1963 161 11 136 chr4 71969439 71969977 -83660143 - L1_Mur1 LINE L1 -3043 2843 2373 6 1134 8837 173 36 15 chr4 71969973 71972727 -83657393 + Lx2B LINE L1 4179 6998 -2 6 1134 234 0 0 0 chr4 71972993 71973019 -83657101 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1134 306 0 0 0 chr4 71973019 71973053 -83657067 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1134 1676 213 35 14 chr4 71973797 71974168 -83655952 + ORR1C2 LTR MaLR 3 381 -3 6 1134 31 26 0 0 chr4 71974350 71974388 -83655732 + AT_rich Low_complexity Low_complexity 1 38 0 6 1134 1053 50 7 0 chr4 71974625 71974765 -83655355 - L1Md_T LINE L1 0 6582 6442 6 1134 23 0 0 0 chr4 71974989 71975012 -83655108 + AT_rich Low_complexity Low_complexity 1 23 0 6 1134 312 48 0 0 chr4 71975012 71975054 -83655066 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1134 382 375 51 7 chr4 71975064 71975201 -83654919 - RSINE1 SINE B4 -17 148 6 6 1134 361 240 8 0 chr4 71975228 71975357 -83654763 - Lx9 LINE L1 -1 7643 7514 6 1134 3123 191 31 36 chr4 71975370 71976045 -83654075 - Lx9 LINE L1 -556 7088 6417 6 1134 383 250 12 0 chr4 71976051 71976131 -83653989 - B4A SINE B4 -209 83 3 6 1134 477 246 84 8 chr4 71976342 71976461 -83653659 - MTD LTR MaLR -18 401 274 6 1134 928 189 289 18 chr4 71976512 71976817 -83653303 - MTC LTR MaLR 0 421 34 6 1134 203 343 92 25 chr4 71977473 71977728 -83652392 - L2c LINE L2 -26 3361 3083 6 1134 871 316 72 32 chr4 71978656 71979003 -83651117 - MLT1D LTR MaLR -140 365 5 6 1134 673 296 10 49 chr4 71979408 71979714 -83650406 - L1MA5A LINE L1 -460 5837 5544 6 1134 350 378 59 0 chr4 71979889 71980024 -83650096 - B4 SINE B4 -20 272 130 6 1134 2962 196 25 9 chr4 71980080 71980640 -83649480 - RMER15 LTR ERVL 0 575 7 6 1134 238 329 0 28 chr4 71980644 71980716 -83649404 - B4A SINE B4 -220 72 3 6 1134 238 346 53 45 chr4 71981935 71982068 -83648052 + MLT1A LTR MaLR 26 159 -215 6 1134 390 31 47 0 chr4 71983441 71983505 -83646615 + (TTA)n Simple_repeat Simple_repeat 3 69 0 6 1134 7713 42 0 1 chr4 71983505 71984612 -83645508 - L1Md_F3 LINE L1 -27 6557 5452 6 1134 3526 75 0 14 chr4 71984618 71985102 -83645018 - L1Md_F2 LINE L1 -13 6569 6093 6 1134 420 41 74 99 chr4 71985103 71985184 -83644936 + L1Md_F LINE L1 805 883 -5636 6 1134 234 0 0 0 chr4 71985204 71985230 -83644890 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1134 3279 223 68 10 chr4 71985305 71986555 -83643565 - RMER1B Other Other -11 1055 16 6 1134 412 289 79 11 chr4 71986611 71986800 -83643320 - MLT1B LTR MaLR -182 208 7 6 1134 1928 54 0 0 chr4 71987800 71988039 -83642081 + L1Md_T LINE L1 6344 6582 0 6 1134 378 0 0 0 chr4 71989357 71989399 -83640721 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1134 261 119 0 0 chr4 71989726 71989768 -83640352 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 6 1134 1416 228 75 6 chr4 71990581 71990912 -83639208 - ORR1D2 LTR MaLR 0 370 17 6 1134 1190 35 0 0 chr4 71991113 71991258 -83638862 + L1Md_T LINE L1 5442 5586 -297 6 1134 8406 33 1 0 chr4 71991259 71992252 -83637868 + L1Md_T LINE L1 5588 6581 -1 6 1134 604 293 82 67 chr4 71992400 71992682 -83637438 + MLT1D LTR MaLR 22 307 -198 6 1134 417 39 0 0 chr4 71992760 71992811 -83637309 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1134 575 345 17 0 chr4 71992817 71992991 -83637129 - B3 SINE B2 -6 210 34 6 1134 250 364 9 27 chr4 71993040 71993150 -83636970 + LTR16A LTR ERVL 2 109 -342 6 1134 22 0 0 0 chr4 71993832 71993854 -83636266 + AT_rich Low_complexity Low_complexity 1 22 0 6 1134 1797 148 19 17 chr4 71993906 71994289 -83635831 - RMER17A LTR ERVK 0 751 1 6 1134 2166 221 132 5 chr4 71994290 71994905 -83635215 + Lx6 LINE L1 6728 7420 -40 6 1134 31 0 0 0 chr4 71994919 71994950 -83635170 + AT_rich Low_complexity Low_complexity 1 31 0 6 1134 3720 35 7 0 chr4 71995027 71995460 -83634660 - RLTR10C LTR ERVK 0 436 1 6 1134 7748 34 0 0 chr4 71995460 71996396 -83633724 - MMERVK10C-int LTR ERVK 0 7581 6646 6 1134 11441 41 0 0 chr4 71996382 71997797 -83632323 - MMERVK10C-int LTR ERVK -1771 5810 4396 6 1134 17884 39 0 0 chr4 71997794 72000000 -83630120 - MMERVK10C-int LTR ERVK -3654 3927 1722 6 1134 6682 50 0 3 chr4 72000000 72000855 -83629265 - MMERVK10C-int LTR ERVK -5860 1721 870 1 1134 1629 98 163 113 chr4 72000853 72001233 -83628887 - MMERVK10C-int LTR ERVK -7182 399 1 1 1134 3799 28 5 0 chr4 72001233 72001667 -83628453 - RLTR10C LTR ERVK 0 436 1 2 1134 640 342 93 57 chr4 72001667 72002151 -83627969 + MT2A LTR ERVL 21 542 -12 3 1134 243 280 74 21 chr4 72002355 72002450 -83627670 + L2c LINE L2 3003 3102 -285 4 1134 1249 280 74 69 chr4 72002558 72003180 -83626940 - Lx8 LINE L1 -5 7468 6844 5 1134 3565 183 55 4 chr4 72003510 72004555 -83625565 + L1_Mur2 LINE L1 942 2048 -3829 6 1134 378 0 0 0 chr4 72004555 72004597 -83625523 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1134 3565 199 77 5 chr4 72004597 72004753 -83625367 + L1_Mur2 LINE L1 2049 2214 -3663 6 1134 5519 122 15 12 chr4 72004751 72005659 -83624461 + L1VL4 LINE L1 19 929 -5373 8 1134 681 13 0 0 chr4 72005659 72005737 -83624383 + (GA)n Simple_repeat Simple_repeat 1 78 0 9 1134 11363 98 2 18 chr4 72005743 72007590 -83622530 + MusHAL1 LINE L1 166 1982 -730 1 1134 992 88 0 13 chr4 72007592 72007742 -83622378 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 1 1134 763 250 224 11 chr4 72007773 72008036 -83622084 + MTD LTR MaLR 48 366 -53 1 1134 330 132 0 0 chr4 72008053 72008106 -83622014 + (CAA)n Simple_repeat Simple_repeat 1 53 0 1 1134 11674 168 13 28 chr4 72008106 72010564 -83619556 + L1_Mur2 LINE L1 2197 4619 -1258 6 1134 2738 171 66 14 chr4 72010551 72011110 -83619010 - Lx4B LINE L1 -11 7047 6460 1 1134 374 206 44 0 chr4 72011865 72011933 -83618187 + ID_B1 SINE B4 133 203 -21 1 1134 331 231 77 0 chr4 72011873 72011951 -83618169 + B1F SINE Alu 66 149 0 1 1134 1578 245 88 6 chr4 72012172 72012537 -83617583 + MTD LTR MaLR 25 419 0 1 1134 2037 254 41 80 chr4 72012538 72013342 -83616778 + MTD-int LTR MaLR 1 790 -308 1 1134 1105 218 133 0 chr4 72013404 72013856 -83616264 - Lx9 LINE L1 0 7644 7133 1 1134 286 226 323 0 chr4 72014643 72014686 -83615434 - MT2A LTR ERVL 0 533 491 1 1134 1477 229 48 19 chr4 72014686 72015059 -83615061 + ORR1C2 LTR MaLR 1 384 0 2 1134 286 226 323 0 chr4 72015059 72015139 -83614981 - MT2A LTR ERVL -43 490 371 1 1134 655 277 81 5 chr4 72015172 72015271 -83614849 - RMER30 DNA MER1_type -2 200 94 2 1134 243 103 0 0 chr4 72015271 72015310 -83614810 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 2 1134 655 277 81 5 chr4 72015310 72015395 -83614725 - RMER30 DNA MER1_type -109 93 2 2 1134 33413 46 1 3 chr4 72015602 72020819 -83609301 + L1Md_T LINE L1 285 5588 -298 2 1134 8283 39 2 0 chr4 72020820 72021814 -83608306 + L1Md_T LINE L1 5590 6585 0 2 1134 313 321 64 18 chr4 72021816 72021987 -83608133 + L1M5 LINE L1 4408 4586 -1560 2 1134 634 325 67 0 chr4 72022391 72022600 -83607520 + ID_B1 SINE B4 2 224 0 2 1134 1238 276 98 14 chr4 72023030 72023538 -83606582 + Lx8 LINE L1 6921 7471 -2 2 1134 444 93 0 0 chr4 72024642 72024717 -83605403 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 1134 414 0 0 0 chr4 72024718 72024764 -83605356 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1134 439 372 39 39 chr4 72024801 72025058 -83605062 - B4A SINE B4 -35 257 1 2 1134 224 209 0 0 chr4 72025254 72025297 -83604823 + (ATG)n Simple_repeat Simple_repeat 3 45 0 3 1134 381 149 0 0 chr4 72025952 72026019 -83604101 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1134 435 19 0 0 chr4 72026019 72026071 -83604049 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1134 1208 27 7 0 chr4 72026574 72026722 -83603398 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 3 1134 1050 86 0 0 chr4 72026726 72026865 -83603255 - B1_Mus2 SINE Alu -8 139 1 3 1134 3987 98 0 23 chr4 72026865 72027435 -83602685 + RMER2 LTR ERV1 6 563 -4 3 1134 700 249 11 52 chr4 72027798 72027989 -83602131 + MTEb LTR MaLR 1 183 -196 3 1134 361 299 109 71 chr4 72027989 72028036 -83602084 + MLT2B3 LTR ERVL 1 247 -307 3 1134 225 0 0 0 chr4 72028548 72028573 -83601547 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1134 654 308 25 35 chr4 72028602 72028784 -83601336 + MTEa-int LTR MaLR 180 359 -1221 3 1134 596 286 113 16 chr4 72028784 72028969 -83601151 + B4 SINE B4 1 203 -89 4 1134 3612 305 68 27 chr4 72029139 72030325 -83599795 + MTEa-int LTR MaLR 345 1578 -2 3 1134 791 292 86 62 chr4 72030315 72030654 -83599466 + MTEa LTR MaLR 3 349 -30 3 1134 913 266 9 14 chr4 72030623 72030833 -83599287 - B3 SINE B2 0 216 8 4 1134 202 333 11 0 chr4 72031070 72031157 -83598963 + (TATG)n Simple_repeat Simple_repeat 3 90 0 4 1134 931 282 41 37 chr4 72031284 72031553 -83598567 - B4A SINE B4 -12 280 11 4 1134 222 254 57 43 chr4 72031552 72031622 -83598498 - PB1D9 SINE Alu 0 120 50 4 1134 387 0 0 0 chr4 72031796 72031839 -83598281 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1134 23 33 0 0 chr4 72032218 72032248 -83597872 + AT_rich Low_complexity Low_complexity 1 30 0 4 1134 454 211 88 0 chr4 72032255 72032369 -83597751 + ORR1D1 LTR MaLR 1 124 -250 4 1134 569 338 61 7 chr4 72032370 72032665 -83597455 + Lx7 LINE L1 6988 7298 -398 4 1134 204 179 0 0 chr4 72032761 72032800 -83597320 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1134 24 67 0 0 chr4 72032859 72032904 -83597216 + AT_rich Low_complexity Low_complexity 1 45 0 5 1134 180 327 75 56 chr4 72033969 72034076 -83596044 - L3 LINE CR1 -1291 3198 3090 5 1134 1071 87 0 0 chr4 72034079 72034217 -83595903 + B1_Mus1 SINE Alu 2 139 -9 5 1134 1260 241 90 37 chr4 72036083 72036523 -83593597 + MT2A LTR ERVL 1 592 -9 5 1134 794 293 82 52 chr4 72036855 72036953 -83593167 - MLT1B LTR MaLR -15 375 262 5 1134 837 164 0 17 chr4 72036953 72037127 -83592993 + Lx2 LINE L1 6826 6996 -1 5 1134 794 293 82 52 chr4 72037127 72037392 -83592728 - MLT1B LTR MaLR -129 261 1 5 1134 485 233 0 0 chr4 72038033 72038119 -83592001 + B1_Mus1 SINE Alu 7 92 -56 5 1134 282 29 0 0 chr4 72038634 72038669 -83591451 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1134 6115 75 0 5 chr4 72039108 72039947 -83590173 - L1_Mus1 LINE L1 -1 6566 5732 5 1134 236 333 0 0 chr4 72040273 72040342 -83589778 + ID4_ SINE ID 2 70 -13 5 1134 258 81 0 0 chr4 72041153 72041190 -83588930 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 6 1134 618 39 0 0 chr4 72041636 72041713 -83588407 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1134 269 26 0 26 chr4 72045244 72045283 -83584837 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1134 250 381 28 56 chr4 72047538 72047556 -83582564 + ID SINE ID 48 63 -161 6 1134 192 77 0 0 chr4 72047556 72047582 -83582538 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 1134 250 381 28 56 chr4 72047582 72047599 -83582521 + ID SINE ID 64 79 -145 6 1134 446 290 16 20 chr4 72047599 72047725 -83582395 + B1F SINE Alu 4 127 0 6 1134 1115 295 97 19 chr4 72048041 72048112 -83582008 - MTD LTR MaLR 0 419 349 6 1134 351 0 0 0 chr4 72048112 72048151 -83581969 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 6 1134 1115 295 97 19 chr4 72048151 72048452 -83581668 - MTD LTR MaLR -71 348 18 6 1134 294 333 153 6 chr4 72048500 72048663 -83581457 + MLT1F2 LTR MaLR 1 187 -373 6 1134 1371 253 0 18 chr4 72049320 72049662 -83580458 + Lx7 LINE L1 6932 7267 -429 6 1134 1499 131 0 0 chr4 72049659 72049904 -83580216 + L1_Mur2 LINE L1 4850 5094 -783 7 1134 595 285 36 27 chr4 72049903 72050123 -83579997 - Lx8 LINE L1 -1040 6433 6212 7 1134 248 233 17 0 chr4 72050260 72050320 -83579800 - ORR1D2 LTR MaLR 0 370 310 7 1134 942 229 44 59 chr4 72050335 72050539 -83579581 - ORR1D2 LTR MaLR -169 201 1 7 1134 291 54 0 0 chr4 72050706 72050743 -83579377 + (CCA)n Simple_repeat Simple_repeat 1 37 0 7 1134 269 261 86 54 chr4 72050890 72050983 -83579137 + MIRb SINE MIR 164 259 -9 7 1134 442 291 0 0 chr4 72051877 72051987 -83578133 - PB1D10 SINE Alu -7 110 1 7 1134 213 345 73 45 chr4 72052411 72052657 -83577463 - L2a LINE L2 -73 3353 3101 7 1134 441 0 0 0 chr4 72053720 72053769 -83576351 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1134 305 322 11 11 chr4 72055438 72055529 -83574591 - RSINE1 SINE B4 0 165 75 7 1134 2468 155 41 26 chr4 72055529 72056050 -83574070 + BGLII LTR ERVK 38 489 -64 7 1134 319 233 12 0 chr4 72056050 72056136 -83573984 + Lx2B LINE L1 6913 6999 -1 8 1134 547 276 71 12 chr4 72056139 72056308 -83573812 - Lx8 LINE L1 -839 6634 6456 8 1134 677 283 47 23 chr4 72056358 72056615 -83573505 - MuRRS4-int LTR ERV1 -1245 3818 3556 8 1134 330 359 12 6 chr4 72057005 72057176 -83572944 - RLTR6-int LTR ERV1 -3250 4528 4357 8 1134 1058 104 0 6 chr4 72057855 72058019 -83572101 + (TCC)n Simple_repeat Simple_repeat 1 163 0 8 1134 207 0 0 0 chr4 72058978 72059001 -83571119 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1134 295 52 103 0 chr4 72059001 72059059 -83571061 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 8 1134 1341 228 123 49 chr4 72059403 72059930 -83570190 - RMER2 LTR ERV1 0 567 2 8 1134 813 243 129 35 chr4 72059931 72060242 -83569878 - Lx8 LINE L1 -1014 6459 6120 8 1134 12213 163 17 32 chr4 72060394 72063685 -83566435 + Lx LINE L1 3349 6621 -33 8 1134 326 42 0 41 chr4 72063685 72063734 -83566386 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 8 1134 2748 81 20 0 chr4 72063734 72064231 -83565889 + MusHAL1 LINE L1 555 1064 -2289 9 1134 785 111 0 60 chr4 72064227 72064361 -83565759 + Lx2 LINE L1 6256 6381 -616 9 1134 33925 45 0 3 chr4 72064360 72069644 -83560476 + L1Md_T LINE L1 224 5588 -298 9 1134 8382 37 0 0 chr4 72069645 72070641 -83559479 + L1Md_T LINE L1 5590 6585 0 9 1134 25 0 0 0 chr4 72070642 72070667 -83559453 + AT_rich Low_complexity Low_complexity 1 25 0 9 1134 554 269 23 8 chr4 72070722 72070853 -83559267 + B3 SINE B2 1 133 -83 9 1134 31 0 0 0 chr4 72070857 72070888 -83559232 + AT_rich Low_complexity Low_complexity 1 31 0 9 1134 1719 117 0 8 chr4 72070888 72071155 -83558965 + Lx2 LINE L1 6369 6633 -364 9 1134 1164 139 14 0 chr4 72071147 72071356 -83558764 + Lx2 LINE L1 6765 6976 -21 9 1134 209 283 0 0 chr4 72073547 72073593 -83556527 + polypyrimidine Low_complexity Low_complexity 1 46 0 9 1134 287 40 12 75 chr4 72073855 72073935 -83556185 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 9 1134 241 371 20 20 chr4 72074046 72074145 -83555975 + MTC LTR MaLR 6 104 -317 9 1134 235 347 54 71 chr4 72074134 72074373 -83555747 + MT2A LTR ERVL 105 339 -194 1 1134 285 183 0 0 chr4 72075216 72075276 -83554844 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1134 263 179 38 25 chr4 72076256 72076336 -83553784 + A-rich Low_complexity Low_complexity 4 84 0 1 1134 414 294 98 38 chr4 72077368 72077683 -83552437 - L1M4c LINE L1 -2143 4236 3903 1 1134 597 288 129 104 chr4 72077692 72077975 -83552145 + ORR1D2 LTR MaLR 4 315 -55 1 1134 3659 26 2 0 chr4 72077975 72078405 -83551715 - L1Md_F3 LINE L1 0 6584 6154 1 1134 1277 52 73 17 chr4 72078406 72078584 -83551536 - B2_Mm2 SINE B2 -7 188 1 1 1134 597 288 129 104 chr4 72078584 72078654 -83551466 + ORR1D2 LTR MaLR 316 368 -2 1 1134 2326 272 33 93 chr4 72078656 72079588 -83550532 + ORR1D2-int LTR MaLR 1 876 -494 1 1134 316 345 32 70 chr4 72079725 72080041 -83550079 - L1M4c LINE L1 -3115 3264 2958 1 1134 2573 149 137 2 chr4 72080041 72080538 -83549582 + RLTR12A LTR ERVK 1 564 -4 1 1134 316 345 32 70 chr4 72080538 72080692 -83549428 - L1M4c LINE L1 -3422 2957 2812 1 1134 800 295 62 101 chr4 72080698 72081086 -83549034 + MTE2a LTR MaLR 5 377 -2 1 1134 350 320 154 47 chr4 72081090 72081566 -83548554 - L1M4c LINE L1 -3564 2815 2289 1 1134 30 27 0 0 chr4 72082266 72082303 -83547817 + AT_rich Low_complexity Low_complexity 1 37 0 1 1134 398 349 0 144 chr4 72082356 72082445 -83547675 + RSINE1 SINE B4 4 76 -89 1 1134 1070 238 125 33 chr4 72082445 72082590 -83547530 + ORR1D1 LTR MaLR 5 164 -210 1 1134 453 36 0 0 chr4 72082590 72082645 -83547475 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1134 1070 238 125 33 chr4 72082645 72082834 -83547286 + ORR1D1 LTR MaLR 165 370 -4 1 1134 398 349 0 144 chr4 72082834 72082918 -83547202 + RSINE1 SINE B4 77 152 -13 1 1134 263 297 95 9 chr4 72083330 72083434 -83546686 + MIR3 SINE MIR 73 179 -29 1 1134 390 260 99 13 chr4 72083588 72083740 -83546380 + Tigger5 DNA MER2_type 2137 2301 -105 1 1134 567 0 0 0 chr4 72083822 72083885 -83546235 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1134 6124 247 53 44 chr4 72085113 72087316 -83542804 - Lx9 LINE L1 -5 7639 5415 1 1134 366 80 0 0 chr4 72087316 72087366 -83542754 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1134 3041 225 59 72 chr4 72087366 72088074 -83542046 - Lx9 LINE L1 -433 5414 4678 1 1134 22 0 0 0 chr4 72088110 72088132 -83541988 + AT_rich Low_complexity Low_complexity 1 22 0 1 1134 645 275 14 7 chr4 72088172 72088315 -83541805 - B3A SINE B2 -53 145 2 1 1134 185 94 31 0 chr4 72088343 72088375 -83541745 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1134 1242 89 12 0 chr4 72088375 72088543 -83541577 - B2_Mm2 SINE B2 -23 172 3 1 1134 41 0 0 0 chr4 72088555 72088596 -83541524 + AT_rich Low_complexity Low_complexity 1 41 0 1 141 4917 180 26 18 chr4 72088694 72089714 -83540406 - Lx4B LINE L1 -271 6787 5759 1 1135 1031 139 15 10 chr4 72089711 72089907 -83540213 - L1_Mur2 LINE L1 -1333 4544 4348 1 1135 267 71 48 0 chr4 72089904 72089946 -83540174 + Lx5 LINE L1 5865 5908 -1142 1 1135 2763 161 68 5 chr4 72089948 72090523 -83539597 - L1_Mur2 LINE L1 -3184 2693 2083 1 1135 1154 275 86 3 chr4 72091896 72092232 -83537888 - MTE2b LTR MaLR 0 379 16 1 1135 297 113 20 0 chr4 72092443 72092501 -83537619 - B1_Mus1 SINE Alu -73 75 15 1 1135 288 0 0 0 chr4 72092540 72092572 -83537548 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1135 4440 59 0 11 chr4 72093210 72093772 -83536348 + L1_Mus1 LINE L1 6003 6558 -9 1 1135 567 0 0 0 chr4 72093772 72093835 -83536285 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1135 216 0 0 0 chr4 72094843 72094867 -83535253 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1135 289 214 137 39 chr4 72095197 72095299 -83534821 - MLT2B4 LTR ERVL 0 672 561 1 1135 522 362 88 51 chr4 72095281 72095656 -83534464 - MT2A LTR ERVL -134 399 11 1 1135 377 263 0 130 chr4 72095956 72096130 -83533990 + MT2B LTR ERVL 1 133 -451 1 1135 935 251 67 52 chr4 72096114 72096458 -83533662 + MT2B LTR ERVL 257 541 -60 1 1135 297 0 0 0 chr4 72096458 72096491 -83533629 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1135 326 75 1 1 chr4 72096491 72096535 -83533585 + MT2B LTR ERVL 514 584 0 1 1135 1646 36 0 0 chr4 72096553 72096745 -83533375 - B2_Mm1a SINE B2 -1 192 1 1 1135 3282 54 2 2 chr4 72096761 72097169 -83532951 - L1_Mus1 LINE L1 0 6567 6160 1 1135 363 23 0 0 chr4 72097220 72097264 -83532856 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1135 442 273 170 14 chr4 72097281 72097422 -83532698 - B3 SINE B2 -52 164 2 1 1135 279 79 0 0 chr4 72097696 72097734 -83532386 + (CCA)n Simple_repeat Simple_repeat 1 38 0 1 1135 239 383 66 26 chr4 72097871 72098046 -83532074 - MLT2B4 LTR ERVL -357 360 180 1 1135 259 268 126 7 chr4 72098060 72098203 -83531917 - MER5C DNA MER1_type -80 233 74 1 1135 278 371 72 90 chr4 72098456 72098788 -83531332 - ORR1E LTR MaLR -15 344 19 1 1135 1880 129 35 65 chr4 72098929 72099268 -83530852 - ORR1A4 LTR MaLR 0 329 1 1 1135 1876 196 47 20 chr4 72099268 72099737 -83530383 - ORR1A4-int LTR MaLR -27 1482 926 1 1135 476 250 154 8 chr4 72099694 72099811 -83530309 + RMER19B LTR ERVK 495 628 -274 1 1135 1353 307 12 43 chr4 72099846 72100408 -83529712 - Lx9 LINE L1 -469 7175 6631 1 1135 455 0 18 0 chr4 72100902 72100957 -83529163 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1135 1799 215 7 7 chr4 72101488 72101895 -83528225 + Lx9 LINE L1 6634 7040 -604 1 1135 425 19 19 0 chr4 72102163 72102217 -83527903 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1135 1140 113 0 6 chr4 72102217 72102377 -83527743 - B2_Mm2 SINE B2 -35 160 2 1 1135 203 281 0 15 chr4 72102679 72102744 -83527376 + A-rich Low_complexity Low_complexity 2 65 0 1 1135 205 261 0 0 chr4 72102877 72102942 -83527178 + A-rich Low_complexity Low_complexity 2 66 0 1 1135 306 358 71 95 chr4 72103399 72103652 -83526468 + L2a LINE L2 2974 3220 -206 1 1135 209 173 39 0 chr4 72103701 72103753 -83526367 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1 1135 226 308 92 46 chr4 72103865 72103974 -83526146 - PB1D9 SINE Alu -6 114 1 1 1135 352 161 59 47 chr4 72105926 72106011 -83524109 - RLTR28B LTR ERVL -369 112 27 1 1135 7049 79 6 5 chr4 72106370 72108089 -83522031 - L1Md_F2 LINE L1 0 6582 4862 1 1135 26687 77 3 4 chr4 72108090 72113172 -83516948 + L1Md_F2 LINE L1 410 5588 -298 1 1135 7849 56 6 1 chr4 72113173 72114164 -83515956 + L1Md_F2 LINE L1 5590 6585 0 1 1135 24105 103 21 4 chr4 72114169 72118674 -83511446 - L1Md_F2 LINE L1 -1007 4876 293 1 1135 21 0 0 0 chr4 72119737 72119758 -83510362 + AT_rich Low_complexity Low_complexity 1 21 0 1 1135 1594 79 0 14 chr4 72120620 72120839 -83509281 + L1_Mus1 LINE L1 6350 6565 -2 1 1135 285 236 0 18 chr4 72120890 72121002 -83509118 + Lx7 LINE L1 7357 7466 -230 1 1135 345 274 47 10 chr4 72121160 72121352 -83508768 - L1M2 LINE L1 -1491 4652 4454 1 1135 22 70 0 0 chr4 72121373 72121416 -83508704 + AT_rich Low_complexity Low_complexity 1 43 0 1 1135 2253 298 98 42 chr4 72121770 72124262 -83505858 - L1_Mur3 LINE L1 -57 5823 3194 1 1135 294 341 41 5 chr4 72124252 72124473 -83505647 - L1M2 LINE L1 -3481 2662 2434 1 1135 204 40 0 0 chr4 72124493 72124518 -83505602 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1135 599 292 135 0 chr4 72124814 72124999 -83505121 - B3 SINE B2 -5 211 2 1 1135 246 193 0 0 chr4 72125118 72125175 -83504945 + T-rich Low_complexity Low_complexity 1 57 0 1 1135 528 371 7 0 chr4 72126585 72126736 -83503384 + B3A SINE B2 1 152 -46 1 1135 423 0 0 0 chr4 72126750 72126797 -83503323 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1135 243 0 0 0 chr4 72126797 72126823 -83503297 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1135 231 271 0 0 chr4 72126823 72126893 -83503227 + G-rich Low_complexity Low_complexity 6 75 0 1 1135 445 92 0 26 chr4 72126879 72126957 -83503163 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 1 1135 5383 19 0 0 chr4 72127024 72127674 -83502446 - L1Md_T LINE L1 0 5883 5234 1 1135 5957 11 1 0 chr4 72127674 72128339 -83501781 + L1Md_T LINE L1 5917 6582 0 1 1135 588 40 0 0 chr4 72128478 72128553 -83501567 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1 1135 240 288 0 12 chr4 72128925 72129006 -83501114 - L1MDa LINE L1 -4962 1671 1592 1 1135 417 358 53 16 chr4 72129086 72129333 -83500787 + Lx8 LINE L1 6967 7222 -251 1 1135 279 0 0 0 chr4 72129430 72129461 -83500659 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1135 25 0 0 0 chr4 72129616 72129641 -83500479 + AT_rich Low_complexity Low_complexity 1 25 0 1 1135 405 58 0 0 chr4 72129924 72129976 -83500144 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1135 410 274 10 12 chr4 72131221 72131353 -83498767 - RMER19A LTR ERVK -289 322 173 1 1135 6152 77 9 0 chr4 72131384 72132190 -83497930 - L1_Mus1 LINE L1 -3 6564 5752 1 1135 5157 95 0 0 chr4 72132190 72132937 -83497183 + L1_Mus1 LINE L1 5024 5770 -113 1 1135 844 212 18 16 chr4 72132937 72133182 -83496938 - RMER19A LTR ERVK -407 204 1 1 1135 338 333 0 8 chr4 72134443 72134561 -83495559 + MERVL_2A-int LTR ERVL 5260 5376 -385 1 1135 1164 120 11 21 chr4 72134645 72134674 -83495446 - B2_Mm2 SINE B2 -9 186 159 1 1135 360 0 0 0 chr4 72134674 72134714 -83495406 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 1135 1164 120 11 21 chr4 72134714 72134871 -83495249 - B2_Mm2 SINE B2 -37 158 2 1 1135 286 209 57 23 chr4 72134877 72134965 -83495155 + L1_Mur3 LINE L1 5361 5451 -429 1 1135 301 295 0 26 chr4 72134978 72135093 -83495027 + L1MA4A LINE L1 5821 5932 -371 1 1135 252 296 25 0 chr4 72135177 72135258 -83494862 - Lx8 LINE L1 -856 6617 6535 1 1135 511 292 76 14 chr4 72135377 72135665 -83494455 - L1M4 LINE L1 -1266 4880 4575 1 1135 922 284 76 15 chr4 72135670 72136005 -83494115 - ORR1E LTR MaLR 0 379 1 1 1135 1022 273 37 7 chr4 72136005 72136278 -83493842 - ORR1E-int LTR MaLR -53 1527 1246 1 1135 936 161 6 30 chr4 72136278 72136444 -83493676 - ORR1B1 LTR MaLR 0 394 233 1 1135 258 32 0 0 chr4 72137020 72137051 -83493069 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1135 2556 16 0 0 chr4 72137382 72137685 -83492435 + L1Md_A LINE L1 5284 5586 -297 1 1135 8662 17 6 0 chr4 72137685 72138675 -83491445 + L1Md_A LINE L1 5587 6582 0 1 1135 406 288 187 24 chr4 72138718 72138964 -83491156 - B4A SINE B4 -6 286 1 1 1135 257 175 53 0 chr4 72139744 72139801 -83490319 + RSINE1 SINE B4 3 62 -103 1 1135 7423 43 1 0 chr4 72139815 72140750 -83489370 - L1Md_T LINE L1 0 6582 5647 1 1135 474 18 0 0 chr4 72140840 72140895 -83489225 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1135 313 261 14 0 chr4 72141119 72141188 -83488932 + PB1D10 SINE Alu 43 112 -5 1 1135 23 33 0 0 chr4 72141208 72141238 -83488882 + AT_rich Low_complexity Low_complexity 1 30 0 1 1135 3704 163 97 10 chr4 72143847 72144631 -83485489 + Lx5 LINE L1 5582 6402 -648 1 1135 1325 250 50 34 chr4 72144676 72145115 -83485005 - L1_Rod LINE L1 -94 5753 5308 1 1135 22555 107 9 142 chr4 72145164 72150220 -83479900 - L1_Mus2 LINE L1 0 6566 2393 2 1135 3290 62 0 5 chr4 72150220 72150642 -83479478 + L1Md_F2 LINE L1 6151 6570 -12 2 1135 22555 115 6 174 chr4 72150642 72151373 -83478747 - L1_Mus2 LINE L1 -3491 2392 1716 2 1135 1028 88 0 75 chr4 72151373 72151533 -83478587 - B1_Mus1 SINE Alu 0 148 1 2 1135 22555 115 6 174 chr4 72151533 72152045 -83478075 - L1_Mus2 LINE L1 -4168 1715 1204 2 1135 1324 230 43 23 chr4 72152045 72152397 -83477723 + RLTR10D LTR ERVK 1 359 0 2 1135 20758 258 17 21 chr4 72152399 72158844 -83471276 + IAP-d-int LTR ERVK 3 6967 -713 2 1135 1967 179 19 8 chr4 72158919 72159290 -83470830 + IAP-d-int LTR ERVK 6168 6542 0 2 1135 1355 205 48 31 chr4 72159290 72159643 -83470477 + RLTR10D LTR ERVK 1 359 0 2 1135 2658 176 15 2 chr4 72159643 72160236 -83469884 - L1Md_F LINE L1 -5877 1112 578 2 1135 5904 202 30 15 chr4 72160288 72161489 -83468631 - Lx5 LINE L1 -3 7047 5829 2 1135 1855 181 11 0 chr4 72161489 72161864 -83468256 - L1_Mur2 LINE L1 -1599 4278 3900 2 1135 472 51 0 0 chr4 72161859 72161918 -83468202 + L1Md_T LINE L1 5528 5586 -297 2 1135 8942 5 3 0 chr4 72161918 72162908 -83467212 + L1Md_T LINE L1 5587 6579 -3 2 1135 783 31 0 0 chr4 72162916 72162965 -83467155 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1135 1376 44 55 0 chr4 72162965 72163192 -83466928 + L1Md_F3 LINE L1 6380 6584 0 2 1135 747 141 0 8 chr4 72163193 72163322 -83466798 - L1_Mur2 LINE L1 -1970 3907 3780 2 1135 5443 123 49 23 chr4 72163343 72164265 -83465855 + Lx3C LINE L1 6024 6969 -7 2 1135 1427 162 124 10 chr4 72164280 72164579 -83465541 - RLTR25B LTR ERVK -241 787 455 2 1135 348 224 0 160 chr4 72164580 72164761 -83465359 - L1_Rod LINE L1 -675 5172 5021 2 1135 12529 111 90 55 chr4 72164774 72166138 -83463982 + L1_Mur1 LINE L1 209 1889 -3997 2 1135 233 246 0 71 chr4 72166138 72166208 -83463912 + RLTR33 LTR ERVK 130 194 -484 2 1135 12529 111 90 55 chr4 72166208 72166719 -83463401 + L1_Mur1 LINE L1 1890 2521 -3365 2 1135 1133 59 0 0 chr4 72166719 72166855 -83463265 - B1_Mus2 SINE Alu -10 137 2 2 1135 23415 87 59 45 chr4 72166855 72167068 -83463052 + Lx3_Mus LINE L1 2522 2710 -3176 2 1135 198 0 0 0 chr4 72167068 72167090 -83463030 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1135 23415 89 53 45 chr4 72167090 72171302 -83458818 + Lx3_Mus LINE L1 2711 7009 0 2 1135 1566 216 117 122 chr4 72171325 72171687 -83458433 - L1_Rod LINE L1 -817 5030 4638 2 1135 212 86 0 28 chr4 72171687 72171723 -83458397 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2 1135 1566 216 117 122 chr4 72171723 72172117 -83458003 - L1_Rod LINE L1 -1210 4637 4231 2 1135 365 107 0 0 chr4 72172117 72172173 -83457947 + B1_Mus2 SINE Alu 92 147 0 2 1135 1566 216 117 122 chr4 72172173 72172376 -83457744 - L1_Rod LINE L1 -1210 4230 4020 2 1135 824 277 91 10 chr4 72172379 72172587 -83457533 - MTD LTR MaLR -194 225 1 2 1135 384 308 112 0 chr4 72172621 72172728 -83457392 + B1F SINE Alu 10 128 -21 2 1135 22 0 0 0 chr4 72173097 72173119 -83457001 + AT_rich Low_complexity Low_complexity 1 22 0 2 1135 186 189 0 0 chr4 72173269 72173306 -83456814 + T-rich Low_complexity Low_complexity 1 37 0 2 1135 665 144 8 0 chr4 72173306 72173424 -83456696 + CT-rich Low_complexity Low_complexity 3 121 0 2 1135 24 0 0 0 chr4 72174590 72174614 -83455506 + AT_rich Low_complexity Low_complexity 1 24 0 2 1135 669 170 128 0 chr4 72175395 72175432 -83454688 + MT2A LTR ERVL 1 37 -496 2 1135 248 0 0 30 chr4 72175432 72175465 -83454655 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 2 1135 669 170 128 0 chr4 72175465 72175568 -83454552 + MT2A LTR ERVL 38 158 -375 2 1135 258 32 0 0 chr4 72175748 72175779 -83454341 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1135 247 162 0 0 chr4 72175876 72175944 -83454176 + MT2A LTR ERVL 466 533 0 2 1135 216 0 0 0 chr4 72177516 72177540 -83452580 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1135 1045 58 0 0 chr4 72178600 72178737 -83451383 + Lx LINE L1 5631 5767 -887 2 1135 3363 193 34 84 chr4 72178737 72179540 -83450580 + RMER17D LTR ERVK 1 492 -92 2 1135 981 126 11 6 chr4 72179540 72179716 -83450404 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 2 1135 3363 186 51 63 chr4 72179716 72179822 -83450298 + RMER17D LTR ERVK 326 432 -457 2 1135 1165 109 5 45 chr4 72179822 72180024 -83450096 - L1Md_F3 LINE L1 0 6584 6391 2 1135 3363 186 51 63 chr4 72180024 72180471 -83449649 + RMER17D LTR ERVK 433 888 -1 2 1135 228 256 0 0 chr4 72180494 72180537 -83449583 + RLTR31A_Mm LTR ERVK 398 440 -144 2 1135 5417 141 14 2 chr4 72180604 72181486 -83448634 + Lx LINE L1 5759 6650 -4 2 1135 392 377 38 14 chr4 72181514 72181802 -83448318 + L1MEe LINE L1 13 307 -4547 2 1135 351 0 0 0 chr4 72181903 72181942 -83448178 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1135 534 31 0 0 chr4 72181942 72182005 -83448115 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1135 292 303 93 41 chr4 72182191 72182459 -83447661 + L1_Mur3 LINE L1 2130 2411 -3469 2 1135 21 0 0 0 chr4 72182668 72182689 -83447431 + AT_rich Low_complexity Low_complexity 1 21 0 2 1135 222 37 0 0 chr4 72182709 72182736 -83447384 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1135 528 209 27 9 chr4 72182912 72183108 -83447012 - Lx6 LINE L1 -1670 5974 5775 2 1135 1561 178 37 34 chr4 72183096 72183450 -83446670 - RMER1C Other Other -2 1340 986 2 1135 429 262 79 6 chr4 72183462 72183626 -83446494 - Lx6 LINE L1 -360 5824 5607 2 1135 767 161 0 95 chr4 72183635 72183793 -83446327 + ORR1C2 LTR MaLR 1 143 -241 2 1135 461 226 109 31 chr4 72183791 72183919 -83446201 + ORR1C2 LTR MaLR 247 384 0 2 1135 379 224 81 0 chr4 72184099 72184197 -83445923 - B1F1 SINE Alu -2 147 33 2 1135 525 104 0 0 chr4 72184629 72184706 -83445414 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2 1135 1056 29 14 7 chr4 72184706 72184847 -83445273 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 2 1135 303 365 99 6 chr4 72185693 72185864 -83444256 - ORR1E LTR MaLR -109 250 64 2 1135 314 23 23 0 chr4 72186206 72186249 -83443871 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1135 249 289 10 0 chr4 72186509 72186606 -83443514 - L1MC LINE L1 -866 5478 5381 2 1135 1275 98 33 0 chr4 72186618 72186802 -83443318 - B2_Mm2 SINE B2 -5 190 1 2 1135 5656 5 0 9 chr4 72186908 72187545 -83442575 - L1Md_A LINE L1 0 6582 5952 2 1135 263 247 31 0 chr4 72187551 72187647 -83442473 - L1MC LINE L1 -888 5258 5160 2 1135 606 236 35 7 chr4 72187745 72187886 -83442234 + MT2A LTR ERVL 1 145 -388 2 1135 646 167 8 16 chr4 72187927 72188038 -83442082 - ORR1B1 LTR MaLR 0 394 284 2 1135 480 35 0 0 chr4 72188038 72188096 -83442024 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1135 310 196 0 21 chr4 72188106 72188200 -83441920 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 1135 439 304 43 52 chr4 72188253 72188579 -83441541 + L1_Mur3 LINE L1 2151 2473 -3407 2 1135 183 244 0 0 chr4 72188930 72188971 -83441149 + L3 LINE CR1 75 115 -4374 2 1135 1188 239 38 65 chr4 72189150 72189549 -83440571 + Lx9 LINE L1 6909 7296 -348 2 1135 6466 83 43 21 chr4 72189535 72190889 -83439231 + L1_Mus1 LINE L1 5164 6567 0 2 1135 860 201 172 19 chr4 72190906 72191220 -83438900 + Lx9 LINE L1 7282 7643 -1 2 1135 1547 234 48 32 chr4 72191220 72191746 -83438374 - L1_Mur3 LINE L1 -1053 4827 4294 2 1135 3188 223 105 26 chr4 72191748 72192953 -83437167 - L1_Mur3 LINE L1 -2618 3262 1963 2 1135 587 266 49 17 chr4 72192943 72193322 -83436798 - L1_Rod LINE L1 -4426 1421 1028 2 1135 1606 55 0 0 chr4 72193547 72193747 -83436373 + L1_Mus1 LINE L1 6368 6567 0 2 1135 347 341 133 0 chr4 72194414 72194549 -83435571 - ID_B1 SINE B4 -69 155 3 2 1135 467 302 57 16 chr4 72197251 72197443 -83432677 - RMER15 LTR ERVL -13 562 363 2 1135 2884 78 23 3 chr4 72197449 72197837 -83432283 + MTA_Mm LTR MaLR 1 396 0 2 1135 261 0 0 0 chr4 72197908 72197937 -83432183 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1135 241 238 48 0 chr4 72197981 72198065 -83432055 - L1_Mur3 LINE L1 -1609 4271 4184 2 1135 195 69 0 0 chr4 72198120 72198149 -83431971 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1135 24 32 0 0 chr4 72198449 72198480 -83431640 + AT_rich Low_complexity Low_complexity 1 31 0 2 1135 465 62 0 0 chr4 72199004 72199069 -83431051 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1135 7753 128 33 17 chr4 72199430 72200801 -83429319 + Lx2 LINE L1 5605 6997 0 2 1135 347 0 23 0 chr4 72201305 72201348 -83428772 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1135 513 270 56 0 chr4 72201349 72201475 -83428645 - B3 SINE B2 -14 202 70 2 1135 7610 46 5 0 chr4 72201475 72202624 -83427496 - L1Md_F2 LINE L1 -3 6579 5426 2 1135 236 286 0 0 chr4 72202624 72202680 -83427440 - B2_Mm2 SINE B2 -139 56 1 2 1135 263 153 4 0 chr4 72202813 72202872 -83427248 - L1MA4 LINE L1 -48 6252 6193 2 1135 202 138 17 17 chr4 72203344 72203403 -83426717 + (TTAAA)n Simple_repeat Simple_repeat 2 60 0 2 1135 36574 11 1 7 chr4 72204118 72209517 -83420603 + L1Md_A LINE L1 225 5586 -297 2 1135 8818 16 0 0 chr4 72209517 72210513 -83419607 + L1Md_A LINE L1 5587 6582 0 2 1135 3403 30 2 2 chr4 72211086 72211482 -83418638 - MTA_Mm LTR MaLR 0 396 1 2 1135 2318 192 39 36 chr4 72211552 72212075 -83418045 - RLTR12A LTR ERVK -4 564 47 2 1135 423 0 0 0 chr4 72212075 72212122 -83417998 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1135 2318 192 39 36 chr4 72212122 72212159 -83417961 - RLTR12A LTR ERVK -522 46 2 2 1135 2673 52 5 121 chr4 72212159 72212572 -83417548 - RLTR10B2 LTR ERVK 0 365 1 2 1135 734 32 11 0 chr4 72213372 72213465 -83416655 + (GGGAGA)n Simple_repeat Simple_repeat 3 96 0 2 1135 841 271 85 46 chr4 72213528 72213962 -83416158 - Lx9 LINE L1 -1240 6404 5954 2 1135 2349 220 108 18 chr4 72213959 72214588 -83415532 + Lx9 LINE L1 6434 7119 -525 2 1135 1661 77 21 4 chr4 72214642 72214877 -83415243 + L1_Mus2 LINE L1 6327 6565 -1 2 1135 273 75 0 0 chr4 72215303 72215343 -83414777 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1135 325 44 43 29 chr4 72215833 72215903 -83414217 + (CAAAA)n Simple_repeat Simple_repeat 2 72 0 2 1135 394 152 55 37 chr4 72217388 72217497 -83412623 + Lx9 LINE L1 7527 7637 -7 2 1135 182 328 35 0 chr4 72218109 72218167 -83411953 + L2a LINE L2 3364 3423 -3 2 1135 285 51 0 0 chr4 72219018 72219057 -83411063 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2 1135 283 39 0 73 chr4 72219445 72219500 -83410620 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 2 1135 1733 108 0 53 chr4 72219500 72219803 -83410317 - L1Md_F2 LINE L1 -40 6542 6256 2 1135 1476 116 46 18 chr4 72219770 72219822 -83410298 - Lx3_Mus LINE L1 -734 6275 6222 2 1135 3875 80 43 73 chr4 72219822 72220453 -83409667 - Lx3_Mus LINE L1 -8 7001 6390 2 141 1476 116 46 18 chr4 72220453 72220681 -83409439 - Lx3_Mus LINE L1 -788 6221 5987 2 1136 2347 112 0 13 chr4 72220675 72221047 -83409073 + Lx3A LINE L1 5604 5970 -1011 2 1136 242 348 92 49 chr4 72221139 72221281 -83408839 - ORR1E LTR MaLR -209 150 3 2 1136 2346 84 0 9 chr4 72221759 72222096 -83408024 - Lx3A LINE L1 -1061 5920 5587 2 1136 234 0 0 0 chr4 72222181 72222207 -83407913 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1136 211 290 62 41 chr4 72222275 72222372 -83407748 - MER5A DNA MER1_type -88 101 3 3 1136 28 0 0 0 chr4 72223876 72223904 -83406216 + AT_rich Low_complexity Low_complexity 1 28 0 3 1136 243 61 0 0 chr4 72225348 72225381 -83404739 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1136 1363 243 127 81 chr4 72226211 72226753 -83403367 - RMER2 LTR ERV1 0 567 1 3 1136 864 297 21 18 chr4 72226919 72227248 -83402872 + Lx8 LINE L1 6761 7090 -383 3 1136 486 60 24 12 chr4 72227946 72228030 -83402090 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 3 1136 690 310 118 0 chr4 72228265 72228510 -83401610 - RMER1B Other Other -771 295 22 3 1136 359 284 203 54 chr4 72230982 72231389 -83398731 + L1MC1 LINE L1 5188 5652 -692 3 1136 249 366 18 0 chr4 72231399 72231563 -83398557 + L1MC1 LINE L1 6136 6302 -31 3 1136 3915 209 57 33 chr4 72231605 72232433 -83397687 + RMER13B LTR ERVK 1 848 -60 3 1136 312 242 90 13 chr4 72232521 72232676 -83397444 - L1MC1 LINE L1 -192 6141 5975 3 1136 32 0 0 0 chr4 72232850 72232882 -83397238 + AT_rich Low_complexity Low_complexity 1 32 0 3 1136 1149 330 22 7 chr4 72234075 72234532 -83395588 + Lx8 LINE L1 6328 6791 -682 3 1136 529 264 81 29 chr4 72234546 72234792 -83395328 + Lx8 LINE L1 6840 7098 -375 3 1136 21 0 0 0 chr4 72235015 72235036 -83395084 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 909 271 121 35 chr4 72235165 72235505 -83394615 + MTD LTR MaLR 1 369 -50 3 1136 317 299 58 55 chr4 72235847 72236023 -83394097 - MLT1H2 LTR MaLR -294 195 60 3 1136 388 251 43 0 chr4 72236255 72236361 -83393759 + MER5A DNA MER1_type 29 137 -41 3 1136 954 246 118 68 chr4 72236427 72236706 -83393414 + MTD LTR MaLR 127 419 0 3 1136 1457 264 159 29 chr4 72236710 72237648 -83392472 + MTD-int LTR MaLR 3 1212 -46 3 1136 206 0 69 0 chr4 72238078 72238107 -83392013 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1136 268 285 186 12 chr4 72239232 72239399 -83390721 + Charlie7 DNA MER1_type 493 688 -1924 3 1136 36955 11 1 7 chr4 72240126 72246115 -83384005 + L1Md_A LINE L1 1 5586 -297 3 1136 9050 3 0 0 chr4 72246115 72247111 -83383009 + L1Md_A LINE L1 5587 6582 0 3 1136 21 36 0 0 chr4 72247128 72247156 -83382964 + AT_rich Low_complexity Low_complexity 1 28 0 3 1136 25 0 0 0 chr4 72247524 72247549 -83382571 + AT_rich Low_complexity Low_complexity 1 25 0 3 1136 452 309 49 22 chr4 72248320 72248505 -83381615 + RMER15 LTR ERVL 352 541 -34 3 1136 1136 61 0 39 chr4 72249715 72249868 -83380252 + B1_Mm SINE Alu 1 147 0 3 1136 366 42 0 0 chr4 72249868 72249916 -83380204 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1136 3751 54 0 4 chr4 72250507 72250974 -83379146 - L1Md_F2 LINE L1 0 6582 6118 3 1136 3678 31 0 4 chr4 72250974 72251430 -83378690 + L1Md_F2 LINE L1 5651 6104 -478 3 1136 955 289 105 3 chr4 72251462 72251747 -83378373 - ORR1D2 LTR MaLR -56 314 1 3 1136 312 183 0 0 chr4 72252120 72252180 -83377940 - Lx7 LINE L1 -5 7691 7632 3 1136 584 298 7 7 chr4 72253691 72253843 -83376277 + RSINE1 SINE B4 4 155 -10 3 1136 549 224 35 80 chr4 72254487 72254686 -83375434 + Lx7 LINE L1 5662 5851 -1845 3 1136 186 43 0 0 chr4 72255751 72255774 -83374346 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1136 23 0 0 0 chr4 72257723 72257746 -83372374 + AT_rich Low_complexity Low_complexity 1 23 0 3 1136 1830 148 72 9 chr4 72257795 72258129 -83371991 - ORR1B2 LTR MaLR 0 367 13 3 1136 230 246 0 0 chr4 72258129 72258194 -83371926 + T-rich Low_complexity Low_complexity 1 65 0 3 1136 4464 207 50 26 chr4 72258200 72259986 -83370134 - Lx4A LINE L1 -6 7052 5222 3 1136 4684 177 43 9 chr4 72259967 72260677 -83369443 - Lx4A LINE L1 -870 5007 4284 3 1136 441 0 0 0 chr4 72260677 72260726 -83369394 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1136 4684 177 43 9 chr4 72260726 72261034 -83369086 - Lx4A LINE L1 -1594 4283 3956 3 1136 869 281 34 44 chr4 72261040 72261334 -83368786 + RLTR20D LTR ERVK 1 291 -277 3 1136 266 256 18 1 chr4 72261308 72261374 -83368746 + RLTR20D LTR ERVK 369 468 -100 3 1136 423 0 0 0 chr4 72261374 72261421 -83368699 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1136 10346 194 47 26 chr4 72261471 72261940 -83368180 - Lx4A LINE L1 -1923 3954 3462 3 1136 3688 65 12 0 chr4 72261940 72262419 -83367701 - L1Md_F2 LINE L1 -1 6581 6097 3 1136 10346 194 47 26 chr4 72262419 72262561 -83367559 - Lx4A LINE L1 -2416 3461 3321 3 1136 4252 119 74 34 chr4 72262561 72263307 -83366813 - Lx3A LINE L1 -8 6973 6198 3 1136 10346 194 47 26 chr4 72263307 72265313 -83364807 - Lx4A LINE L1 -2557 3320 1280 3 1136 368 248 22 0 chr4 72265308 72265429 -83364691 - Lx4A LINE L1 -6066 1020 898 3 1136 857 159 21 0 chr4 72265739 72265884 -83364236 - B1_Mus1 SINE Alu 0 148 1 3 1136 393 102 0 0 chr4 72265926 72265985 -83364135 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1136 624 350 122 36 chr4 72267394 72267925 -83362195 + L1MEc LINE L1 36 612 -5788 3 1136 271 322 80 0 chr4 72267937 72268136 -83361984 + L1MEc LINE L1 649 863 -5537 3 1136 6141 89 9 2 chr4 72268391 72269235 -83360885 - L1_Mus4 LINE L1 -9 6627 5778 3 1136 294 157 0 0 chr4 72269235 72269286 -83360834 - L1_Mm LINE L1 -276 5607 5557 3 1136 1692 142 44 0 chr4 72269286 72269560 -83360560 - ORR1A2 LTR MaLR -41 286 1 3 1136 7132 128 11 5 chr4 72269560 72270665 -83359455 - ORR1A2-int LTR MaLR 0 1963 853 3 1136 405 0 0 0 chr4 72270668 72270713 -83359407 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1136 5979 100 46 13 chr4 72270715 72271207 -83358913 - Lx3_Mus LINE L1 -26 6983 6481 3 1136 2953 74 0 106 chr4 72271207 72271678 -83358442 - BGLII LTR ERVK 0 421 1 3 1136 5979 100 46 13 chr4 72271678 72272139 -83357981 - Lx3_Mus LINE L1 -529 6480 5998 3 1136 430 75 18 0 chr4 72272138 72272213 -83357907 + Lx3_Mus LINE L1 5907 5995 -1014 3 1136 282 231 0 9 chr4 72272213 72272318 -83357802 - ORR1A2-int LTR MaLR -1093 870 767 3 1136 324 291 107 18 chr4 72272236 72272348 -83357772 - B1_Mus2 SINE Alu -23 124 3 3 1136 511 249 32 96 chr4 72272348 72272465 -83357655 - MT2B LTR ERVL -395 206 69 3 1136 2900 141 61 52 chr4 72272458 72273013 -83357107 - ORR1A2-int LTR MaLR -1403 560 1 3 1136 1722 156 43 43 chr4 72273013 72273335 -83356785 - ORR1A2 LTR MaLR 0 327 6 3 1136 469 188 20 10 chr4 72273627 72273729 -83356391 + Lx5 LINE L1 6673 6775 -275 3 1136 229 282 135 15 chr4 72273796 72273929 -83356191 + L1MEg LINE L1 1336 1484 -5603 3 1136 1309 255 21 15 chr4 72273962 72274289 -83355831 + Lx5 LINE L1 6722 7050 0 3 1136 324 324 27 0 chr4 72275195 72275380 -83354740 + L1MEg LINE L1 1349 1538 -5796 3 1136 340 375 80 8 chr4 72275450 72275813 -83354307 + L1MEg LINE L1 1658 2046 -4962 3 1136 380 292 22 87 chr4 72275835 72276019 -83354101 + L1MEg LINE L1 2285 2456 -4646 3 1136 355 143 55 109 chr4 72276025 72276135 -83353985 + Lx LINE L1 6551 6654 0 3 1136 361 334 92 20 chr4 72276254 72276611 -83353509 + L1MEg LINE L1 2763 3145 -4189 3 1136 196 246 55 55 chr4 72276649 72276722 -83353398 + L3 LINE CR1 4103 4175 -314 3 1136 315 0 0 0 chr4 72276907 72276942 -83353178 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1136 2828 229 21 11 chr4 72277210 72278214 -83351906 - Lx6 LINE L1 -1214 6246 5232 3 1136 4099 210 60 4 chr4 72278208 72279139 -83350981 + Lx6 LINE L1 4192 5174 -703 3 1136 2838 233 76 79 chr4 72279135 72280394 -83349726 - Lx6 LINE L1 -3517 2363 1107 3 1136 309 297 47 33 chr4 72280607 72280757 -83349363 - Lx6 LINE L1 -6899 829 678 3 1136 262 139 28 0 chr4 72281262 72281334 -83348786 + T-rich Low_complexity Low_complexity 4 77 0 3 1136 213 121 0 0 chr4 72281425 72281458 -83348662 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1136 2362 183 47 4 chr4 72281458 72281952 -83348168 - L1_Mur3 LINE L1 -531 5349 4838 3 1136 180 0 0 0 chr4 72281952 72281972 -83348148 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1136 2362 183 47 4 chr4 72281972 72282030 -83348090 - L1_Mur3 LINE L1 -1043 4837 4774 3 1136 1589 212 60 14 chr4 72282030 72282379 -83347741 - RLTR17 LTR ERVK -310 382 18 3 1136 5635 226 39 62 chr4 72282384 72284492 -83345628 - L1_Mur3 LINE L1 -3262 2618 557 3 1136 272 337 82 21 chr4 72284798 72284895 -83345225 + MER5A1 DNA MER1_type 9 105 -61 3 1136 931 304 98 30 chr4 72285126 72285495 -83344625 + MLT1C LTR MaLR 7 400 -67 3 1136 212 375 25 0 chr4 72285537 72285617 -83344503 - L2c LINE L2 -212 3175 3094 3 1136 743 208 34 20 chr4 72286228 72286375 -83343745 + B1_Mur3 SINE Alu 1 149 0 3 1136 232 174 0 0 chr4 72286380 72286426 -83343694 + A-rich Low_complexity Low_complexity 1 46 0 3 1136 345 24 0 0 chr4 72287656 72287698 -83342422 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1136 265 280 20 70 chr4 72289639 72289739 -83340381 + MER5A1 DNA MER1_type 33 127 -39 3 1136 3001 144 137 11 chr4 72290517 72291087 -83339033 - RLTR26 LTR ERVK 0 642 1 3 1136 924 114 0 0 chr4 72291145 72291285 -83338835 + (TC)n Simple_repeat Simple_repeat 1 140 0 3 1136 331 98 20 0 chr4 72291315 72291366 -83338754 - HAL1-3A_ME LINE L1 -831 2027 1976 3 1136 608 344 55 36 chr4 72291414 72291816 -83338304 - Lx8 LINE L1 -411 7285 6880 3 1136 3300 249 55 20 chr4 72291818 72292938 -83337182 - L1_Mur3 LINE L1 -1253 4627 3468 3 1136 665 176 0 0 chr4 72292935 72293043 -83337077 - Lx LINE L1 -273 6777 6670 3 1136 366 271 139 32 chr4 72293039 72293226 -83336894 + L1_Mur3 LINE L1 2927 3133 -2747 3 1136 2554 176 123 29 chr4 72293227 72293812 -83336308 - Lx4B LINE L1 -368 6690 6051 3 1136 1804 349 70 11 chr4 72293982 72294886 -83335234 + RMER15-int LTR ERVL 297 1253 -3746 3 1136 378 0 0 0 chr4 72295162 72295204 -83334916 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1136 492 327 76 11 chr4 72295782 72296045 -83334075 + RMER15-int LTR ERVL 1919 2198 -2801 3 1136 996 291 19 4 chr4 72296066 72296332 -83333788 + RMER15-int LTR ERVL 2233 2502 -2497 3 1136 839 309 61 24 chr4 72296440 72296768 -83333352 + RMER15-int LTR ERVL 4634 4973 -26 3 1136 292 308 67 25 chr4 72296768 72296888 -83333232 + RMER15 LTR ERVL 1 125 -450 3 1136 602 299 48 18 chr4 72296977 72297205 -83332915 + RMER15 LTR ERVL 336 570 -5 3 1136 456 335 76 18 chr4 72297220 72297445 -83332675 + Lx5 LINE L1 6774 7011 -39 3 1136 317 339 114 35 chr4 72297491 72297745 -83332375 + L1M2 LINE L1 5029 5302 -841 3 1136 30 45 0 0 chr4 72297847 72297891 -83332229 + AT_rich Low_complexity Low_complexity 1 44 0 3 1136 6490 117 47 29 chr4 72298231 72298244 -83331876 - Lx LINE L1 0 6654 6643 3 1136 243 0 0 0 chr4 72298244 72298271 -83331849 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 3 1136 19894 126 40 26 chr4 72298271 72299530 -83330590 - Lx LINE L1 -12 6642 5369 3 1136 207 69 0 0 chr4 72299530 72299559 -83330561 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1136 1581 80 0 0 chr4 72299562 72299775 -83330345 - L1_Mus2 LINE L1 0 6566 6354 3 1136 19894 168 12 15 chr4 72299775 72303020 -83327100 - Lx LINE L1 -518 5368 2131 3 1136 227 170 0 21 chr4 72303069 72303117 -83327003 + B3 SINE B2 164 210 -6 3 1136 6678 42 2 1 chr4 72303566 72304379 -83325741 + L1Md_T LINE L1 5769 6582 0 3 1136 6188 101 54 74 chr4 72304469 72305523 -83324597 - RLTR13D4 LTR ERVK 0 1033 1 3 1136 260 182 53 35 chr4 72305618 72305675 -83324445 - B2_Mm2 SINE B2 -137 58 1 3 1136 21 0 0 0 chr4 72306920 72306941 -83323179 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 32 43 0 0 chr4 72306985 72307031 -83323089 + AT_rich Low_complexity Low_complexity 1 46 0 3 1136 24 53 0 0 chr4 72307451 72307489 -83322631 + AT_rich Low_complexity Low_complexity 1 38 0 3 1136 348 361 41 104 chr4 72307535 72307853 -83322267 - MER31B LTR ERV1 -164 302 5 3 1136 243 277 60 0 chr4 72307945 72308028 -83322092 - MER46C DNA MER2_type -232 106 19 3 1136 444 348 0 0 chr4 72309891 72310029 -83320091 + B1F1 SINE Alu 1 138 -11 3 1136 333 219 10 77 chr4 72310658 72310762 -83319358 + MER53 DNA hAT 94 190 -3 3 1136 232 253 38 12 chr4 72311359 72311439 -83318681 - BLACKJACK DNA AcHobo -2110 834 753 3 1136 704 326 40 80 chr4 72311600 72311850 -83318270 - MLT1F1 LTR MaLR -15 612 307 3 1136 405 197 7 33 chr4 72311942 72312094 -83318026 + GA-rich Low_complexity Low_complexity 2 149 0 3 1136 3711 94 35 13 chr4 72312344 72312885 -83317235 - Lx3_Mus LINE L1 -8 7001 6449 4 1136 192 135 0 0 chr4 72313239 72313276 -83316844 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 4 1136 481 267 131 35 chr4 72313693 72313891 -83316229 - RMER17C-int LTR ERVK -248 2990 2774 4 1136 487 214 0 0 chr4 72313934 72314018 -83316102 + LSU-rRNA_Hsa rRNA rRNA 4202 4285 -750 4 1136 257 160 20 0 chr4 72314071 72314109 -83316011 - RLTR19-int LTR ERVK -2461 3676 3638 4 1136 1621 68 9 0 chr4 72314109 72314328 -83315792 + L1Md_F2 LINE L1 6361 6581 -1 4 1136 257 160 20 0 chr4 72314328 72314339 -83315781 - RLTR19-int LTR ERVK -2500 3637 3627 4 1136 1332 264 57 42 chr4 72314402 72314860 -83315260 - MYSERV6-int LTR ERVK -261 8698 8232 4 1136 672 248 0 28 chr4 72314860 72315005 -83315115 - B1_Mus1 SINE Alu -7 141 1 4 1136 1332 246 50 151 chr4 72315005 72315440 -83314680 - MYSERV6-int LTR ERVK -728 8231 8092 4 1136 1120 75 0 7 chr4 72315440 72315587 -83314533 - B1_Mus2 SINE Alu 0 147 2 4 1136 709 238 49 181 chr4 72315587 72315896 -83314224 - MYSERV6-int LTR ERVK -3547 1975 1692 4 1136 594 0 0 0 chr4 72315922 72315988 -83314132 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 4 1136 450 316 36 26 chr4 72316929 72317124 -83312996 - RodERV21-int LTR ERV1 -4787 204 8 4 1136 219 36 0 0 chr4 72317265 72317293 -83312827 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 1136 276 53 0 0 chr4 72317962 72318000 -83312120 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1136 261 221 0 0 chr4 72318328 72318396 -83311724 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1136 352 248 113 85 chr4 72318412 72318553 -83311567 + MTEb LTR MaLR 206 368 -11 4 1136 376 278 43 17 chr4 72318563 72318680 -83311440 - MT2A LTR ERVL -412 121 2 4 1136 33 43 0 0 chr4 72319609 72319656 -83310464 + AT_rich Low_complexity Low_complexity 1 47 0 4 1136 672 330 117 41 chr4 72319816 72320382 -83309738 - Lx9 LINE L1 -127 7517 6909 4 1136 2462 184 19 3 chr4 72320787 72321324 -83308796 - RMER4B LTR ERVK -3 582 1 4 1136 1044 284 119 12 chr4 72321352 72321680 -83308440 + MTD LTR MaLR 57 419 0 4 1136 278 347 57 0 chr4 72321817 72321941 -83308179 - MER5A1 DNA MER1_type -2 164 34 4 1136 1162 247 109 134 chr4 72322528 72322606 -83307514 + RLTR18B LTR ERVK 1 79 -433 4 1136 414 0 0 0 chr4 72322606 72322652 -83307468 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 4 1136 1162 247 109 134 chr4 72322652 72323096 -83307024 + RLTR18B LTR ERVK 80 509 -3 4 1136 567 43 0 0 chr4 72323308 72323378 -83306742 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 4 1136 917 267 55 21 chr4 72323621 72323858 -83306262 + MTE2a LTR MaLR 96 340 -39 4 1136 1246 64 52 6 chr4 72323882 72324054 -83306066 + B2_Mm2 SINE B2 2 181 -14 4 1136 4628 102 11 1 chr4 72324750 72325398 -83304722 + Lx3_Mus LINE L1 6354 7007 -2 4 1136 285 281 74 66 chr4 72325924 72326046 -83304074 - MLT1H LTR MaLR -35 514 392 4 1136 749 189 0 6 chr4 72326094 72326128 -83303992 + polypyrimidine Low_complexity Low_complexity 131 164 0 4 1136 1100 117 0 11 chr4 72326128 72326310 -83303810 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1136 749 189 0 6 chr4 72326310 72326440 -83303680 + CT-rich Low_complexity Low_complexity 1 130 0 4 1136 437 274 76 23 chr4 72326440 72326612 -83303508 - Lx6 LINE L1 0 7460 7280 4 1136 1910 266 70 31 chr4 72326622 72327258 -83302862 - Lx6 LINE L1 -300 7160 6277 4 1136 258 356 49 10 chr4 72327565 72327667 -83302453 + MER58A DNA MER1_type 13 118 -106 4 1136 504 309 173 36 chr4 72328058 72328309 -83301811 - MTEb LTR MaLR 0 379 90 4 1136 477 0 0 0 chr4 72329398 72329451 -83300669 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1136 681 47 0 0 chr4 72329451 72329536 -83300584 + (TTC)n Simple_repeat Simple_repeat 2 86 0 4 1136 706 99 41 27 chr4 72329548 72329694 -83300426 - RMER17B LTR ERVK -501 457 310 4 1136 414 0 0 0 chr4 72329955 72330001 -83300119 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1136 502 217 7 21 chr4 72330877 72331018 -83299102 + (TATATG)n Simple_repeat Simple_repeat 3 141 0 4 1136 1131 219 176 4 chr4 72331018 72331387 -83298733 + RMER6C LTR ERVK 1 424 -266 4 1136 3491 108 6 0 chr4 72331437 72331929 -83298191 - L1_Mus4 LINE L1 -20 6616 6122 4 1136 1288 191 21 36 chr4 72331929 72332215 -83297905 + RMER6C LTR ERVK 362 671 -19 4 1136 264 100 0 0 chr4 72332277 72332317 -83297803 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1136 715 297 48 30 chr4 72332338 72332675 -83297445 + Lx8 LINE L1 6204 6546 -927 4 1136 4152 189 81 36 chr4 72333119 72333988 -83296132 - RMER13B LTR ERVK 0 908 1 4 1136 324 70 0 0 chr4 72334519 72334562 -83295558 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1136 492 260 451 3 chr4 72334577 72334930 -83295190 + MMAR1 DNA Mariner 1 512 -774 4 1136 675 131 0 9 chr4 72334947 72335055 -83295065 + RMER19B LTR ERVK 1 107 -795 4 1136 2304 176 82 0 chr4 72335064 72335489 -83294631 + RMER19B LTR ERVK 436 895 -7 4 1136 26755 88 14 5 chr4 72335494 72336799 -83293321 + L1Md_F LINE L1 217 1968 -3915 4 1136 327 25 0 0 chr4 72336799 72336839 -83293281 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1136 26755 76 5 1 chr4 72336839 72340030 -83290090 + L1Md_F LINE L1 1969 5173 -710 4 1136 33647 36 2 0 chr4 72340031 72346204 -83283916 + L1Md_T LINE L1 1 5589 -297 4 1136 8947 9 0 0 chr4 72346204 72347200 -83282920 + L1Md_T LINE L1 5590 6585 0 4 1136 229 340 0 31 chr4 72347486 72347583 -83282537 + MTD LTR MaLR 11 104 -315 4 1136 334 0 0 42 chr4 72347617 72347665 -83282455 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1136 537 318 22 57 chr4 72347665 72347892 -83282228 + MT2A LTR ERVL 155 373 -160 4 1136 219 103 0 0 chr4 72348018 72348057 -83282063 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1136 233 186 23 0 chr4 72348093 72348136 -83281984 + MTD LTR MaLR 226 269 -150 4 1136 310 197 66 66 chr4 72348164 72348240 -83281880 + MTD LTR MaLR 297 417 -2 4 1136 402 185 0 0 chr4 72349321 72349402 -83280718 + (TTA)n Simple_repeat Simple_repeat 3 83 0 4 1136 462 18 0 0 chr4 72349418 72349473 -83280647 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1136 211 159 15 73 chr4 72350476 72350544 -83279576 + T-rich Low_complexity Low_complexity 3 66 0 4 1136 227 290 91 27 chr4 72350660 72350770 -83279350 - L2a LINE L2 -3 3423 3307 4 1136 1539 186 56 16 chr4 72350932 72351238 -83278882 + MTC LTR MaLR 104 421 0 4 17 851 226 21 13 chr4 72351529 72351762 -83278358 - RLTR42-int LTR ERVK -1283 4239 4005 4 1137 445 167 167 0 chr4 72351826 72351916 -83278204 - RLTR42-int LTR ERVK -2548 2974 2870 4 1137 29 28 0 0 chr4 72352263 72352299 -83277821 + AT_rich Low_complexity Low_complexity 1 36 0 4 1137 234 326 67 0 chr4 72353128 72353217 -83276903 - RMER15 LTR ERVL -68 507 413 4 1137 25 51 0 0 chr4 72353327 72353366 -83276754 + AT_rich Low_complexity Low_complexity 1 39 0 4 1137 22 56 0 0 chr4 72353428 72353464 -83276656 + AT_rich Low_complexity Low_complexity 1 36 0 4 1137 319 22 0 0 chr4 72353802 72353848 -83276272 + L1_Mus4 LINE L1 6585 6630 -6 4 1137 299 281 17 9 chr4 72354707 72354822 -83275298 - RLTR42-int LTR ERVK -4208 1314 1199 4 1137 339 182 27 13 chr4 72355425 72355544 -83274576 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 4 1137 564 56 0 0 chr4 72355544 72355616 -83274504 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1137 339 182 27 13 chr4 72355616 72355646 -83274474 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 4 1137 345 75 0 0 chr4 72355865 72355918 -83274202 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1137 701 299 89 9 chr4 72355990 72356415 -83273705 - L1_Mur3 LINE L1 -3270 2610 2152 4 1137 390 91 0 0 chr4 72356438 72356493 -83273627 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1137 375 325 89 0 chr4 72356512 72356635 -83273485 - RSINE1 SINE B4 -4 161 28 4 1137 324 328 96 34 chr4 72356665 72356842 -83273278 - HAL1-3A_ME LINE L1 -420 2438 2251 4 1137 272 301 132 27 chr4 72356961 72357262 -83272858 - L1_Rod LINE L1 -3846 2001 1666 4 1137 1109 153 47 21 chr4 72357262 72357495 -83272625 - Lx3A LINE L1 -4 6977 6739 4 1137 272 301 132 27 chr4 72357495 72357640 -83272480 - L1_Rod LINE L1 -4182 1665 1509 4 1137 349 315 20 30 chr4 72357671 72358004 -83272116 - L1_Rod LINE L1 -6280 1328 1003 4 1137 257 335 37 6 chr4 72358154 72358316 -83271804 - MER121 Unknown Unknown -135 277 111 4 1137 561 42 0 0 chr4 72358326 72358398 -83271722 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 1137 252 0 0 0 chr4 72358398 72358426 -83271694 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1137 624 236 208 31 chr4 72358836 72359125 -83270995 + RLTR15 LTR ERVK 1 340 -19 4 1137 21 36 0 0 chr4 72359137 72359165 -83270955 + AT_rich Low_complexity Low_complexity 1 28 0 4 1137 233 347 124 21 chr4 72359914 72360011 -83270109 + ID_B1 SINE B4 6 112 -112 4 1137 2091 194 43 8 chr4 72360170 72360569 -83269551 - MTC LTR MaLR -8 413 1 4 1137 23 33 0 0 chr4 72360645 72360675 -83269445 + AT_rich Low_complexity Low_complexity 1 30 0 4 1137 220 182 29 29 chr4 72360678 72360746 -83269374 + CT-rich Low_complexity Low_complexity 5 72 0 4 1137 269 265 20 0 chr4 72360871 72360969 -83269151 + L1_Mur3 LINE L1 5203 5302 -578 4 1137 462 267 30 8 chr4 72360972 72361104 -83269016 - ORR1D1 LTR MaLR -2 372 238 4 1137 670 243 14 7 chr4 72361104 72361245 -83268875 - URR1B DNA MER1_type -83 142 1 4 1137 241 280 68 8 chr4 72362850 72362936 -83267184 + ORR1E LTR MaLR 11 97 -262 4 1137 3148 149 155 30 chr4 72362942 72363640 -83266480 - L1_Mus4 LINE L1 -13 6623 5839 4 1137 718 221 8 0 chr4 72363986 72364117 -83266003 - ETnERV2-int LTR ERVK -204 7202 7071 4 1137 3517 148 15 2 chr4 72364117 72364721 -83265399 - L1_Mm LINE L1 -37 5846 5235 4 1137 420 111 0 0 chr4 72364830 72364893 -83265227 + (TTC)n Simple_repeat Simple_repeat 2 64 0 4 1137 1151 282 141 61 chr4 72365495 72366168 -83263952 - MMAR1 DNA Mariner -1 1285 559 4 1137 7654 60 1 2 chr4 72366237 72367650 -83262470 - L1Md_F2 LINE L1 -11 6571 5162 4 1137 36140 31 2 0 chr4 72367655 72374474 -83255646 - L1Md_T LINE L1 0 6585 1 4 1137 187 182 50 0 chr4 72374485 72374534 -83255586 + MIRc SINE MIR 89 146 -122 4 1137 25 31 0 0 chr4 72374618 72374650 -83255470 + AT_rich Low_complexity Low_complexity 1 32 0 4 1137 1206 78 0 0 chr4 72374717 72374897 -83255223 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1137 189 0 0 0 chr4 72375296 72375317 -83254803 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 4 1137 466 295 14 68 chr4 72375321 72375530 -83254590 + ORR1E LTR MaLR 163 375 -4 4 1137 1771 303 67 71 chr4 72375536 72376356 -83253764 + ORR1E-int LTR MaLR 6 822 -548 4 1137 881 300 60 32 chr4 72376443 72376791 -83253329 + ORR1E LTR MaLR 2 359 0 4 1137 3176 53 5 0 chr4 72376940 72377334 -83252786 + MTA_Mm LTR MaLR 1 396 0 5 1137 218 185 16 115 chr4 72377564 72377625 -83252495 + PB1 SINE Alu 73 127 0 5 1137 21 57 0 0 chr4 72378155 72378190 -83251930 + AT_rich Low_complexity Low_complexity 1 35 0 5 1137 248 203 31 0 chr4 72378191 72378255 -83251865 + (TATG)n Simple_repeat Simple_repeat 2 67 0 5 1137 689 289 10 5 chr4 72378284 72378482 -83251638 - B3 SINE B2 -15 201 3 5 1137 297 0 0 0 chr4 72378543 72378576 -83251544 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 1137 226 326 40 30 chr4 72379305 72379406 -83250714 + L2 LINE L2 2712 2813 -606 5 1137 246 223 28 0 chr4 72379460 72379543 -83250577 + L1MC LINE L1 5679 5769 -575 5 1137 4237 142 54 7 chr4 72379542 72380981 -83249139 + L1_Mur2 LINE L1 509 2025 -3852 5 1137 3659 122 29 109 chr4 72380998 72381762 -83248358 - RLTR13D6 LTR ERVK 0 902 200 5 1137 7482 173 15 11 chr4 72381762 72383029 -83247091 + Lx4B LINE L1 5522 6808 -250 5 1137 570 29 0 0 chr4 72383029 72383097 -83247023 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1137 7482 177 19 16 chr4 72383097 72383347 -83246773 + Lx4B LINE L1 6809 7050 -8 5 1137 351 154 0 0 chr4 72385236 72385301 -83244819 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1137 25 0 0 0 chr4 72385431 72385456 -83244664 + AT_rich Low_complexity Low_complexity 1 25 0 5 1137 1024 327 45 36 chr4 72385619 72386202 -83243918 - Lx8 LINE L1 -31 7442 6855 5 1137 271 0 51 0 chr4 72386215 72386254 -83243866 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1137 1110 97 7 0 chr4 72386258 72386403 -83243717 - B1_Mm SINE Alu -1 146 1 5 1137 28 0 0 0 chr4 72386590 72386618 -83243502 + AT_rich Low_complexity Low_complexity 1 28 0 5 1137 660 285 16 48 chr4 72386684 72386705 -83243415 + B3 SINE B2 1 21 -195 5 1137 233 0 62 0 chr4 72386711 72386743 -83243377 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1137 1097 64 0 21 chr4 72386743 72386880 -83243240 - B1_Mm SINE Alu -12 135 1 5 1137 660 285 16 48 chr4 72386880 72387046 -83243074 + B3 SINE B2 22 182 -34 5 1137 28 29 0 0 chr4 72387050 72387085 -83243035 + AT_rich Low_complexity Low_complexity 1 35 0 5 1137 1160 58 0 0 chr4 72387085 72387223 -83242897 + B1_Mm SINE Alu 1 138 -9 5 1137 366 85 0 0 chr4 72387223 72387282 -83242838 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 1137 30 0 0 0 chr4 72387366 72387396 -83242724 + AT_rich Low_complexity Low_complexity 1 30 0 5 1137 461 144 11 0 chr4 72387590 72387680 -83242440 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1137 212 122 0 39 chr4 72387689 72387740 -83242380 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 5 1137 382 281 56 20 chr4 72387818 72388014 -83242106 - Lx7 LINE L1 -1880 5816 5614 5 1137 3440 124 0 17 chr4 72388112 72388643 -83241477 + Lx2 LINE L1 6117 6638 -359 5 1137 2081 138 5 75 chr4 72389034 72389433 -83240687 + Lx LINE L1 6284 6654 0 5 1137 23 0 0 0 chr4 72390027 72390050 -83240070 + AT_rich Low_complexity Low_complexity 1 23 0 5 1137 22 35 0 0 chr4 72391061 72391090 -83239030 + AT_rich Low_complexity Low_complexity 1 29 0 5 1137 457 125 0 0 chr4 72391187 72391259 -83238861 + B1_Mur4 SINE Alu 79 150 0 5 1137 2741 77 3 5 chr4 72391294 72391671 -83238449 + L1_Mus2 LINE L1 6191 6566 0 5 1137 287 215 74 25 chr4 72391683 72391764 -83238356 + L1M3 LINE L1 4881 4965 -1175 5 1137 538 303 189 30 chr4 72391776 72392068 -83238052 + Lx8 LINE L1 7005 7331 -142 5 1137 498 46 0 0 chr4 72392068 72392133 -83237987 + (CAA)n Simple_repeat Simple_repeat 2 66 0 5 1137 538 303 189 30 chr4 72392133 72392241 -83237879 + Lx8 LINE L1 7332 7468 -5 5 1137 243 0 0 0 chr4 72392439 72392466 -83237654 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1137 215 169 0 30 chr4 72392467 72392534 -83237586 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 5 1137 297 286 0 148 chr4 72393083 72393198 -83236922 + MTEa LTR MaLR 1 98 -281 5 1137 3609 58 5 0 chr4 72393396 72393951 -83236169 - L1_Mus1 LINE L1 -526 6040 5483 5 1137 3862 82 27 0 chr4 72393951 72394474 -83235646 + L1_Mus1 LINE L1 6031 6567 0 5 1137 506 381 55 4 chr4 72395229 72395466 -83234654 - B4A SINE B4 -1 291 43 5 1137 3978 62 0 23 chr4 72396030 72396558 -83233562 - L1Md_F2 LINE L1 0 6582 6067 5 1137 303 177 0 0 chr4 72398259 72398321 -83231799 + (CAT)n Simple_repeat Simple_repeat 1 62 0 5 1137 7213 111 30 1 chr4 72398419 72399926 -83230194 - L1_Mus3 LINE L1 -1 6637 5102 5 1137 273 229 125 0 chr4 72399917 72400013 -83230107 - L1_Mm LINE L1 -709 5174 5067 5 1137 1829 42 0 0 chr4 72400968 72401184 -83228936 + L1Md_F2 LINE L1 5371 5586 -297 5 1137 8049 46 5 0 chr4 72401184 72402163 -83227957 + L1Md_F2 LINE L1 5587 6570 -12 5 1137 219 148 15 62 chr4 72402645 72402728 -83227392 + A-rich Low_complexity Low_complexity 1 79 0 5 1137 307 236 119 20 chr4 72402951 72403102 -83227018 - Tigger7 DNA MER2_type -74 2417 2252 5 1137 574 316 0 71 chr4 72403158 72403369 -83226751 - B3A SINE B2 -2 196 1 5 1137 1105 320 40 72 chr4 72403378 72403825 -83226295 - Tigger7 DNA MER2_type -2055 436 4 5 1137 24 32 0 0 chr4 72404176 72404207 -83225913 + AT_rich Low_complexity Low_complexity 1 31 0 5 1137 469 252 31 63 chr4 72404647 72404760 -83225360 - B1_Mur1 SINE Alu -1 148 41 5 1137 1489 134 85 25 chr4 72404760 72404930 -83225190 + Lx LINE L1 6350 6518 -136 5 1137 180 0 0 0 chr4 72404930 72404950 -83225170 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 5 1137 1489 134 85 25 chr4 72404950 72405062 -83225058 + Lx LINE L1 6519 6648 -6 5 1137 469 252 31 63 chr4 72405062 72405075 -83225045 - B1_Mur1 SINE Alu -109 40 27 5 1137 5633 30 0 0 chr4 72405183 72405844 -83224276 + L1Md_T LINE L1 5922 6582 0 5 1137 600 160 0 0 chr4 72405922 72406041 -83224079 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1137 1404 240 106 52 chr4 72406054 72406537 -83223583 - RCHARR1 DNA MER1_type 0 974 466 5 1137 601 308 56 5 chr4 72406538 72406753 -83223367 - RCHARR1 DNA MER1_type -685 289 64 5 1137 851 299 91 22 chr4 72406792 72407155 -83222965 - Lx8 LINE L1 -11 7462 7075 5 1137 6674 162 19 19 chr4 72407221 72409034 -83221086 + L1VL4 LINE L1 131 1883 -1676 5 1137 3097 71 0 22 chr4 72409034 72409439 -83220681 - MTA_Mm LTR MaLR 0 396 1 5 1137 6674 120 11 15 chr4 72409439 72409529 -83220591 + L1VL4 LINE L1 1884 1967 -1592 5 1137 6886 116 56 25 chr4 72409516 72411217 -83218903 + L1_Mus3 LINE L1 4905 6636 -2 5 1137 238 289 54 15 chr4 72411444 72411574 -83218546 + Lx8 LINE L1 6742 6876 -597 5 1137 1329 295 37 15 chr4 72412606 72413012 -83217108 + Lx6 LINE L1 7020 7434 -26 5 1137 1696 298 97 34 chr4 72413657 72414448 -83215672 - Lx8 LINE L1 -210 7263 6423 5 1137 887 170 0 11 chr4 72414448 72414626 -83215494 + CT-rich Low_complexity Low_complexity 3 178 0 5 1137 3647 125 5 16 chr4 72414642 72415219 -83214901 - Lx LINE L1 -1 6653 6083 5 1137 262 300 12 0 chr4 72415221 72415301 -83214819 - Lx8 LINE L1 -1058 6415 6335 5 1137 3080 11 0 3 chr4 72415373 72415720 -83214400 - ORR1A0 LTR MaLR 0 346 1 5 1137 473 0 18 0 chr4 72415744 72415801 -83214319 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 5 1137 261 0 0 0 chr4 72415801 72415829 -83214291 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1137 280 258 106 64 chr4 72415834 72415975 -83214145 + Lx8 LINE L1 6203 6349 -1124 5 1137 250 26 0 49 chr4 72416425 72416466 -83213654 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1137 21 82 0 0 chr4 72417490 72417539 -83212581 + AT_rich Low_complexity Low_complexity 1 49 0 5 1137 222 62 0 0 chr4 72420406 72420438 -83209682 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1137 2728 135 70 4 chr4 72420479 72420933 -83209187 + Lx3A LINE L1 6498 6981 0 5 1137 28 29 0 0 chr4 72420943 72420978 -83209142 + AT_rich Low_complexity Low_complexity 1 35 0 5 1137 485 199 100 60 chr4 72422548 72422698 -83207422 + MTEa LTR MaLR 224 379 0 5 1137 225 376 24 0 chr4 72423011 72423096 -83207024 - MLT1I LTR MaLR -246 165 79 5 1137 287 349 0 45 chr4 72423120 72423231 -83206889 + PB1D10 SINE Alu 3 108 -9 5 1137 408 319 72 0 chr4 72424442 72424649 -83205471 - ID_B1 SINE B4 0 224 3 5 1137 1817 37 47 32 chr4 72424649 72424902 -83205218 + RMER17D LTR ERVK 1 257 -632 5 1137 1208 50 6 0 chr4 72424902 72425062 -83205058 + L1Md_F3 LINE L1 6410 6570 -14 5 1137 534 16 0 0 chr4 72425178 72425241 -83204879 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 5 1137 584 298 28 33 chr4 72425280 72425495 -83204625 - ID_B1 SINE B4 -9 215 2 5 1137 453 292 109 13 chr4 72425636 72425792 -83204328 + ORR1D2 LTR MaLR 22 192 -178 5 1137 2674 132 70 10 chr4 72425868 72425973 -83204147 + RMER17D LTR ERVK 345 457 -432 5 1137 1062 89 18 0 chr4 72425973 72426142 -83203978 + (TC)n Simple_repeat Simple_repeat 1 172 0 5 1137 2674 132 70 10 chr4 72426142 72426550 -83203570 + RMER17D LTR ERVK 458 888 -1 5 1137 22 0 0 0 chr4 72427895 72427917 -83202203 + AT_rich Low_complexity Low_complexity 1 22 0 5 1137 198 0 51 51 chr4 72428308 72428347 -83201773 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1137 208 297 0 26 chr4 72428825 72428901 -83201219 + GA-rich Low_complexity Low_complexity 3 76 0 5 1137 5348 237 82 18 chr4 72429091 72429132 -83200988 - Lx7 LINE L1 -200 7496 7453 5 1137 459 0 0 0 chr4 72429132 72429183 -83200937 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1137 5348 237 82 18 chr4 72429183 72430561 -83199559 - Lx7 LINE L1 -244 7452 5986 5 1137 5533 120 44 8 chr4 72430617 72431499 -83198621 - Lx3A LINE L1 -18 6963 6050 5 1137 306 0 0 0 chr4 72431574 72431608 -83198512 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1137 3861 197 317 19 chr4 72431632 72432633 -83197487 - L1_Mur3 LINE L1 -1264 4613 3050 5 1137 965 113 35 0 chr4 72432633 72432775 -83197345 - B1_Mus2 SINE Alu 0 147 1 5 1137 3861 186 361 20 chr4 72432775 72433635 -83196485 - L1_Mur3 LINE L1 -2831 3049 2136 5 1137 347 0 23 0 chr4 72436571 72436614 -83193506 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1137 299 331 7 66 chr4 72437153 72437289 -83192831 - MER31A LTR ERV1 -8 477 350 5 1137 180 0 0 0 chr4 72437461 72437481 -83192639 + (CAA)n Simple_repeat Simple_repeat 1 20 0 5 1137 361 372 104 32 chr4 72437482 72437732 -83192388 + RMER15 LTR ERVL 294 561 -14 5 1137 265 389 52 40 chr4 72437741 72437990 -83192130 + RMER15-int LTR ERVL 1 252 -4747 5 1137 1808 133 3 0 chr4 72438622 72438907 -83191213 + L1VL2 LINE L1 571 856 -5479 5 1137 14483 114 4 5 chr4 72438905 72441510 -83188610 + L1VL2 LINE L1 605 3208 -407 6 1137 3177 144 18 0 chr4 72441500 72442048 -83188072 - L1_Mm LINE L1 -1788 4095 3538 6 1137 6587 108 25 0 chr4 72442042 72442994 -83187126 + L1_Mus2 LINE L1 5590 6565 -1 6 1137 29 28 0 0 chr4 72443011 72443047 -83187073 + AT_rich Low_complexity Low_complexity 1 36 0 6 1137 524 309 10 123 chr4 72443145 72443348 -83186772 - B3A SINE B2 -15 183 4 6 1137 186 43 0 0 chr4 72443404 72443427 -83186693 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1137 777 47 84 0 chr4 72444671 72444778 -83185342 - L1_Mur1 LINE L1 -771 5115 5000 6 1137 9273 86 59 3 chr4 72444778 72446160 -83183960 + L1_Mur1 LINE L1 3539 4998 -888 6 1137 251 264 70 23 chr4 72446397 72446525 -83183595 + RLTR42-int LTR ERVK 4095 4228 -1294 6 1137 23 0 0 0 chr4 72446575 72446598 -83183522 + AT_rich Low_complexity Low_complexity 1 23 0 6 1137 2613 121 2 28 chr4 72446601 72447028 -83183092 + Lx LINE L1 6239 6654 0 6 1137 1586 212 75 39 chr4 72447218 72447605 -83182515 + RMER10A LTR ERVL 1 401 -41 6 1137 397 283 53 48 chr4 72447711 72447900 -83182220 + RLTR42-int LTR ERVK 4253 4442 -1080 6 1137 522 0 0 0 chr4 72448236 72448294 -83181826 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1137 390 41 0 0 chr4 72448294 72448343 -83181777 - B1_Mur4 SINE Alu -10 140 92 6 1137 226 244 44 55 chr4 72448343 72448385 -83181735 - ID_B1 SINE B4 -10 214 125 6 1137 21 0 0 0 chr4 72448475 72448496 -83181624 + AT_rich Low_complexity Low_complexity 1 21 0 6 1137 379 307 117 7 chr4 72448593 72448747 -83181373 - MER58B DNA MER1_type -38 303 133 6 1137 487 315 28 65 chr4 72448746 72449013 -83181107 + B4A SINE B4 5 292 0 6 1137 23 0 0 0 chr4 72449049 72449072 -83181048 + AT_rich Low_complexity Low_complexity 1 23 0 6 1137 2380 282 69 66 chr4 72449148 72449261 -83180859 - RCHARR1 DNA MER1_type -30 944 828 6 1137 930 144 7 0 chr4 72449261 72449400 -83180720 + B1_Mus2 SINE Alu 2 141 -6 6 1137 2380 282 69 66 chr4 72449400 72450225 -83179895 - RCHARR1 DNA MER1_type -147 827 3 6 1137 207 0 0 0 chr4 72450265 72450288 -83179832 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1137 220 320 0 51 chr4 72450338 72450417 -83179703 - B1_Mus1 SINE Alu -42 106 32 6 1137 535 39 0 25 chr4 72450510 72450590 -83179530 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1137 4077 190 60 43 chr4 72450820 72451762 -83178358 + RMER17B LTR ERVK 1 958 0 6 1137 191 304 72 0 chr4 72452171 72452240 -83177880 + MER5A DNA MER1_type 40 113 -76 6 1137 264 355 46 34 chr4 72452288 72452463 -83177657 + MER5B DNA MER1_type 2 178 0 6 1137 1169 68 0 0 chr4 72453040 72453187 -83176933 + B1_Mm SINE Alu 1 147 0 6 1137 210 37 0 0 chr4 72453187 72453214 -83176906 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1137 978 172 145 37 chr4 72454108 72454349 -83175771 + ORR1B1 LTR MaLR 1 267 -127 6 1137 1488 274 83 21 chr4 72454902 72456295 -83173825 + L1_Rod LINE L1 1031 2560 -3287 6 1137 1693 261 38 59 chr4 72456305 72456827 -83173293 - RMER19C LTR ERVK 0 611 101 6 1137 659 262 121 36 chr4 72456836 72457224 -83172896 + L1_Rod LINE L1 2585 3005 -2842 6 1137 717 282 79 35 chr4 72457234 72457606 -83172514 + Lx6 LINE L1 6058 6675 -1021 6 1137 1963 123 97 16 chr4 72457611 72457991 -83172129 - RLTR10A LTR ERVK 0 411 1 6 1137 871 316 87 41 chr4 72457994 72458669 -83171451 + Lx6 LINE L1 6490 7433 -27 6 1137 833 269 112 26 chr4 72458666 72458681 -83171439 + L1_Rod LINE L1 3016 3030 -2817 6 1137 3364 37 0 0 chr4 72458681 72459082 -83171038 + L1Md_T LINE L1 6181 6581 -1 6 1137 833 269 112 26 chr4 72459082 72459558 -83170562 + L1_Rod LINE L1 3031 3548 -2299 6 1137 545 316 7 7 chr4 72460182 72460319 -83169801 + RSINE1 SINE B4 1 137 -28 6 1137 261 0 0 0 chr4 72461008 72461037 -83169083 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1137 297 0 0 0 chr4 72463951 72463984 -83166136 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1137 881 281 9 18 chr4 72463984 72464212 -83165908 - ORR1D2 LTR MaLR -1 369 144 6 1137 13146 137 21 35 chr4 72464219 72466477 -83163643 - L1_Mus4 LINE L1 0 6654 4347 6 1137 2255 29 0 21 chr4 72466477 72466763 -83163357 - L1Md_F2 LINE L1 -11 6571 6292 6 1137 13146 157 11 57 chr4 72466763 72467779 -83162341 - L1_Mus4 LINE L1 -1537 4346 3385 6 1137 4022 110 8 34 chr4 72467776 72468446 -83161674 + MusHAL1 LINE L1 1494 2145 -567 6 1137 527 209 60 0 chr4 72468530 72468664 -83161456 - URR1A DNA MER1_type 0 226 85 6 1137 6387 61 32 1 chr4 72468671 72469504 -83160616 - L1_Mus1 LINE L1 0 6567 5709 6 1137 342 0 0 0 chr4 72469592 72469630 -83160490 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1137 309 89 0 0 chr4 72469630 72469674 -83160446 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1137 236 30 30 0 chr4 72469690 72469723 -83160397 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 6 1137 28 0 0 0 chr4 72470170 72470198 -83159922 + AT_rich Low_complexity Low_complexity 1 28 0 6 1137 21651 181 40 14 chr4 72470458 72473158 -83156962 + Lx2B LINE L1 742 3483 -2403 6 1137 449 27 0 51 chr4 72473158 72473237 -83156883 + (CAAAA)n Simple_repeat Simple_repeat 1 75 0 6 1137 21651 178 41 13 chr4 72473237 72474440 -83155680 + Lx2B LINE L1 3484 4731 -1155 6 1137 204 40 0 0 chr4 72474440 72474465 -83155655 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1137 21651 170 57 14 chr4 72474465 72476553 -83153567 + Lx2B LINE L1 4732 6912 -88 6 1137 479 338 67 25 chr4 72476600 72476885 -83153235 + Lx8 LINE L1 7047 7343 -130 6 1137 262 215 138 18 chr4 72477188 72477297 -83152823 - L1M3 LINE L1 -732 5439 5318 6 1137 22 0 0 0 chr4 72477460 72477482 -83152638 + AT_rich Low_complexity Low_complexity 1 22 0 6 1137 8002 65 13 1 chr4 72477547 72478589 -83151531 - L1_Mus1 LINE L1 -2 6565 5480 6 1137 1197 47 0 0 chr4 72478589 72478737 -83151383 - B1_Mus1 SINE Alu 0 148 1 6 1137 8002 104 38 11 chr4 72478737 72479588 -83150532 - L1_Mus1 LINE L1 -404 5479 4628 6 1137 266 47 0 44 chr4 72479819 72479864 -83150256 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1137 993 90 0 0 chr4 72479868 72480001 -83150119 - B1_Mus1 SINE Alu -15 133 1 6 1137 208 300 104 43 chr4 72480359 72480474 -83149646 - MIRc SINE MIR -21 247 126 6 1137 414 331 25 38 chr4 72480768 72480928 -83149192 - MER5B DNA MER1_type 0 178 21 6 1137 1023 89 7 7 chr4 72481183 72481330 -83148790 + B1_Mm SINE Alu 1 147 0 6 1137 272 261 0 28 chr4 72481611 72481682 -83148438 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 6 1137 830 329 93 31 chr4 72482088 72482537 -83147583 - Lx8 LINE L1 -170 7303 6827 6 142 1451 282 108 30 chr4 72482596 72482933 -83147187 + L1_Mur3 LINE L1 4379 4733 -1147 6 1138 314 45 23 0 chr4 72482933 72482977 -83147143 + (TAA)n Simple_repeat Simple_repeat 3 47 0 6 1138 1451 282 108 30 chr4 72482977 72483432 -83146688 + L1_Mur3 LINE L1 4734 5232 -648 6 1138 266 320 142 31 chr4 72483556 72484013 -83146107 + L1MEg LINE L1 802 1309 -4775 6 1138 1757 180 194 73 chr4 72484434 72484992 -83145128 - RMER6C LTR ERVK -65 625 1 6 1138 244 268 0 0 chr4 72484994 72485050 -83145070 + Lx8 LINE L1 6237 6292 -1181 6 1138 1239 322 30 24 chr4 72485057 72485525 -83144595 + RMER15-int LTR ERVL 4312 4782 -217 6 1138 619 347 60 10 chr4 72485535 72485849 -83144271 + Lx8 LINE L1 6895 7224 -249 6 1138 358 191 0 0 chr4 72485972 72486040 -83144080 + RMER15 LTR ERVL 403 470 -105 6 1138 720 304 123 4 chr4 72486250 72486494 -83143626 + B4A SINE B4 18 290 -2 6 1138 429 244 0 0 chr4 72486561 72486684 -83143436 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 6 1138 180 0 0 0 chr4 72487067 72487087 -83143033 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1138 11259 23 2 0 chr4 72488176 72490177 -83139943 - L1Md_A LINE L1 0 6582 4577 6 1138 493 344 83 19 chr4 72490219 72490435 -83139685 + B4A SINE B4 1 230 -62 6 1138 392 100 29 0 chr4 72490469 72490539 -83139581 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 6 1138 967 170 4 34 chr4 72490534 72491000 -83139120 + G-rich Low_complexity Low_complexity 1 451 0 6 1138 833 118 15 0 chr4 72491048 72491184 -83138936 + (GAAAA)n Simple_repeat Simple_repeat 4 141 0 6 1138 306 73 0 0 chr4 72491194 72491235 -83138885 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1138 373 330 16 25 chr4 72491245 72491366 -83138754 + RSINE1 SINE B4 46 165 0 6 1138 198 0 0 0 chr4 72491498 72491520 -83138600 + (CCCA)n Simple_repeat Simple_repeat 3 24 0 6 1138 21 57 0 0 chr4 72491893 72491928 -83138192 + AT_rich Low_complexity Low_complexity 1 35 0 6 1138 208 70 47 0 chr4 72492220 72492263 -83137857 + (TTAAA)n Simple_repeat Simple_repeat 4 48 0 6 1138 6378 143 53 15 chr4 72492522 72493626 -83136494 - Lx2 LINE L1 0 6997 5852 6 1138 3212 135 12 0 chr4 72493639 72494156 -83135964 + L1_Mur2 LINE L1 3970 4492 -1385 6 1138 1704 231 53 32 chr4 72494234 72494567 -83135553 - MTC LTR MaLR -1 420 84 6 1138 614 62 21 0 chr4 72494567 72494664 -83135456 - L1Md_T LINE L1 -1 6581 6483 6 1138 1704 231 53 32 chr4 72494664 72494741 -83135379 - MTC LTR MaLR -338 83 1 6 1138 29 0 0 0 chr4 72495221 72495250 -83134870 + AT_rich Low_complexity Low_complexity 1 29 0 6 1138 399 236 154 75 chr4 72495263 72495493 -83134627 - RLTR19-int LTR ERVK -3027 3110 2891 6 1138 375 210 134 0 chr4 72495577 72495696 -83134424 - RLTR19-int LTR ERVK -3299 2838 2704 6 1138 1938 162 20 6 chr4 72495697 72496051 -83134069 + RLTR15 LTR ERVK 1 359 0 6 1138 219 69 0 0 chr4 72496204 72496233 -83133887 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1138 297 51 0 0 chr4 72496251 72496290 -83133830 + (CAA)n Simple_repeat Simple_repeat 1 39 0 6 1138 189 131 0 47 chr4 72496411 72496475 -83133645 + A-rich Low_complexity Low_complexity 2 62 0 6 1138 225 220 0 106 chr4 72496834 72496900 -83133220 + MT2B LTR ERVL 196 254 -347 6 1138 373 203 18 10 chr4 72496845 72496931 -83133189 + B1_Mur4 SINE Alu 48 131 -18 6 1138 902 199 103 106 chr4 72497016 72497336 -83132784 + MYSERV6-int LTR ERVK 6406 6724 -2235 6 1138 304 240 27 0 chr4 72497334 72497409 -83132711 + RLTR18-int LTR ERVK 4722 4798 -563 6 1138 476 280 8 25 chr4 72497943 72498064 -83132056 + B1_Mur4 SINE Alu 26 144 -6 6 1138 985 261 28 41 chr4 72498254 72498426 -83131694 + MYSERV-int LTR ERVK 4293 4458 -2092 6 1138 1690 168 40 16 chr4 72498426 72498747 -83131373 + ORR1A4 LTR MaLR 1 329 0 6 1138 985 261 28 41 chr4 72498747 72498894 -83131226 + MYSERV-int LTR ERVK 4459 4608 -1942 6 1138 2207 48 34 0 chr4 72498920 72499211 -83130909 - L1Md_F3 LINE L1 -14 6570 6270 6 1138 4963 38 1 0 chr4 72499211 72500000 -83130120 + L1Md_F3 LINE L1 5285 6074 -510 6 1138 1657 50 0 0 chr4 72500000 72500199 -83129921 + L1Md_F3 LINE L1 6075 6273 -311 1 1138 1158 242 74 53 chr4 72500201 72500636 -83129484 + MYSERV16_I-int LTR ERVK 327 760 -1566 2 1138 1733 51 0 0 chr4 72500636 72500852 -83129268 - L1Md_T LINE L1 0 6582 6367 3 1138 1158 268 66 139 chr4 72500852 72501023 -83129097 + MYSERV16_I-int LTR ERVK 761 782 -1544 2 1138 287 335 31 49 chr4 72501036 72501199 -83128921 + RMER4A LTR ERVK 292 451 -15 4 1138 473 191 0 34 chr4 72501199 72501318 -83128802 + MYSERV16_I-int LTR ERVK 1069 1183 -1143 2 1138 6022 21 0 0 chr4 72501318 72502106 -83128014 - L1Md_T LINE L1 -298 6284 5497 5 1138 2828 249 57 40 chr4 72502113 72503169 -83126951 + MYSERV6-int LTR ERVK 7827 8900 -59 6 1138 1877 195 14 0 chr4 72503231 72503575 -83126545 + RLTR15 LTR ERVK 11 359 0 7 1138 454 247 25 101 chr4 72503575 72503773 -83126347 - MYSERV6-int LTR ERVK -1529 7430 7248 8 1138 727 200 44 48 chr4 72503809 72504061 -83126059 - RLTR42-int LTR ERVK -3404 2118 1868 9 1138 471 266 51 10 chr4 72504486 72504715 -83125405 + L1M2 LINE L1 5159 5400 -764 1 1138 229 258 82 69 chr4 72504719 72504899 -83125221 + L1M2 LINE L1 5751 5931 -369 1 1138 1176 209 0 10 chr4 72505365 72505568 -83124552 - RLTR25B LTR ERVK -823 205 5 1 1138 2690 211 79 21 chr4 72505570 72505899 -83124221 - RLTR42-int LTR ERVK -2550 2972 2611 1 1138 1962 202 22 35 chr4 72505899 72506356 -83123764 - RLTR11B LTR ERVK -2 451 1 1 1138 2690 211 79 21 chr4 72506356 72506700 -83123420 - RLTR42-int LTR ERVK -2912 2610 2260 1 1138 349 214 19 0 chr4 72506740 72506843 -83123277 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1138 220 39 0 0 chr4 72506843 72506869 -83123251 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1138 319 155 17 0 chr4 72506876 72506934 -83123186 - RLTR42-int LTR ERVK -3341 2181 2123 1 1138 382 186 32 48 chr4 72506977 72507101 -83123019 - RLTR42-int LTR ERVK -3394 2128 2007 1 1138 1329 141 58 15 chr4 72507153 72507413 -83122707 - Lx3B LINE L1 0 6973 6703 1 1138 27 62 0 0 chr4 72508249 72508297 -83121823 + AT_rich Low_complexity Low_complexity 1 48 0 1 1138 241 270 60 0 chr4 72510655 72510755 -83119365 - L1MA7 LINE L1 -31 6260 6155 1 1138 601 161 25 0 chr4 72512002 72512120 -83118000 - Lx9 LINE L1 -7 7637 7517 1 1138 549 55 0 0 chr4 72513979 72514052 -83116068 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 2 1138 1048 212 0 24 chr4 72514158 72514371 -83115749 + Lx7 LINE L1 7045 7252 -444 2 1138 630 0 0 0 chr4 72515182 72515252 -83114868 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 2 1138 206 306 0 0 chr4 72515254 72515326 -83114794 + T-rich Low_complexity Low_complexity 1 72 0 2 1138 41 36 0 0 chr4 72515390 72515445 -83114675 + AT_rich Low_complexity Low_complexity 1 55 0 2 1138 7252 92 23 3 chr4 72515495 72516588 -83113532 - L1_Mus3 LINE L1 -6 6632 5519 2 1138 21370 113 18 16 chr4 72516570 72520683 -83109437 - L1_Mus3 LINE L1 -1146 4737 615 2 1138 246 188 6 15 chr4 72520683 72520778 -83109342 - B1_Mus2 SINE Alu -54 95 2 2 1138 229 300 75 32 chr4 72520696 72520789 -83109331 - B4A SINE B4 -118 174 78 2 1138 272 376 112 39 chr4 72520902 72521107 -83109013 + ORR1E LTR MaLR 9 228 -131 2 1138 427 288 90 39 chr4 72521249 72521636 -83108484 + L1MA6 LINE L1 5434 5840 -460 2 1138 24 67 0 0 chr4 72521642 72521687 -83108433 + AT_rich Low_complexity Low_complexity 1 45 0 3 1138 1581 301 98 18 chr4 72521699 72521983 -83108137 - Lx4B LINE L1 -62 6996 6707 3 1138 1128 12 0 50 chr4 72521983 72522162 -83107958 + (TATAG)n Simple_repeat Simple_repeat 1 170 0 3 1138 1581 301 98 18 chr4 72522162 72522439 -83107681 - Lx4B LINE L1 -352 6706 6392 3 1138 5957 209 21 28 chr4 72522447 72524314 -83105806 + Lx5 LINE L1 4492 6355 -695 3 1138 334 242 30 20 chr4 72524315 72524416 -83105704 + L1MA6 LINE L1 5825 5926 -365 2 1138 290 381 22 82 chr4 72524478 72524661 -83105459 + B3A SINE B2 12 183 -15 3 1138 334 264 27 0 chr4 72524694 72524842 -83105278 + (TA)n Simple_repeat Simple_repeat 2 153 0 3 1138 308 206 19 43 chr4 72524809 72524971 -83105149 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 3 1138 203 160 19 39 chr4 72524975 72525027 -83105093 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 3 1138 271 372 8 15 chr4 72525176 72525307 -83104813 - HAL1 LINE L1 -1633 874 745 3 1138 394 343 107 47 chr4 72525493 72525811 -83104309 - HAL1 LINE L1 -2137 370 34 3 1138 332 264 23 31 chr4 72526469 72526598 -83103522 + GA-rich Low_complexity Low_complexity 3 130 0 3 1138 220 210 16 0 chr4 72528371 72528433 -83101687 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1138 22 0 0 0 chr4 72530053 72530075 -83100045 + AT_rich Low_complexity Low_complexity 1 22 0 4 1138 306 341 134 37 chr4 72530399 72530697 -83099423 + Arthur1B DNA Tip100 1 327 -898 4 1138 727 100 125 0 chr4 72530939 72531059 -83099061 + RMER19A LTR ERVK 1 135 -602 4 1138 3485 43 41 35 chr4 72531064 72531525 -83098595 + L1_Mus1 LINE L1 6077 6540 -27 4 1138 286 239 176 107 chr4 72531531 72531662 -83098458 + RMER19A LTR ERVK 146 285 -452 4 1138 292 219 176 59 chr4 72531663 72531756 -83098364 + Lx5 LINE L1 6907 7012 -38 4 1138 243 0 0 0 chr4 72531756 72531783 -83098337 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1138 774 261 19 10 chr4 72532175 72532380 -83097740 + B3 SINE B2 2 208 -8 4 1138 685 361 22 22 chr4 72532487 72532759 -83097361 + B4A SINE B4 3 274 -18 4 1138 2714 37 6 3 chr4 72533227 72533553 -83096567 - IAPLTR2b LTR ERVK 0 327 1 4 1138 1396 293 62 10 chr4 72533706 72534109 -83096011 - RMER15 LTR ERVL -3 572 149 5 1138 2268 75 0 0 chr4 72534263 72534556 -83095564 - L1_Mus4 LINE L1 -757 5879 5587 5 1138 1307 242 67 3 chr4 72534602 72534929 -83095191 + Lx9 LINE L1 6904 7251 -393 5 1138 267 367 75 43 chr4 72535394 72535582 -83094538 + MER45C DNA Tip100 1 194 -759 5 1138 4041 278 87 27 chr4 72535974 72537523 -83092597 + MERVL_2A-int LTR ERVL 626 2268 -3493 5 1138 1554 191 90 29 chr4 72537523 72537677 -83092443 + ORR1B2 LTR MaLR 1 153 -214 5 1138 446 0 19 0 chr4 72537677 72537731 -83092389 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1138 1554 191 90 29 chr4 72537731 72537922 -83092198 + ORR1B2 LTR MaLR 154 367 0 5 1138 4041 278 87 27 chr4 72537922 72537945 -83092175 + MERVL_2A-int LTR ERVL 2269 2291 -3470 5 1138 1871 305 99 52 chr4 72537987 72538960 -83091160 + MERVL_2A-int LTR ERVL 2479 3496 -2218 5 1138 7172 85 12 6 chr4 72539540 72540920 -83089200 - L1_Mus1 LINE L1 -1 6566 5179 5 1138 8938 58 2 1 chr4 72540916 72542808 -83087312 - L1Md_T LINE L1 0 6582 4689 5 1138 23 0 0 0 chr4 72544267 72544290 -83085830 + AT_rich Low_complexity Low_complexity 1 23 0 5 1138 204 182 0 0 chr4 72545671 72545715 -83084405 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1138 24 67 0 0 chr4 72545715 72545760 -83084360 + AT_rich Low_complexity Low_complexity 1 45 0 6 1138 15571 97 26 130 chr4 72545771 72549139 -83080981 - L1_Mur1 LINE L1 -1800 4086 1017 6 1138 3616 92 2 2 chr4 72549139 72549631 -83080489 + RLTR13D3 LTR ERVK 1 492 -622 6 1138 2034 90 26 13 chr4 72549629 72549932 -83080188 + RLTR13D3 LTR ERVK 808 1114 0 6 1138 2631 200 72 29 chr4 72549932 72550242 -83079878 - L1_Mur1 LINE L1 -5962 1022 721 6 1138 1042 184 51 14 chr4 72550242 72550502 -83079618 + L1_Mus1 LINE L1 6341 6567 0 6 1138 2631 213 71 42 chr4 72550502 72551078 -83079042 - L1_Mur1 LINE L1 -6264 720 17 6 1138 2417 261 67 101 chr4 72551076 72551440 -83078680 - L1_Rod LINE L1 -1545 4302 3938 6 1138 405 0 0 0 chr4 72551440 72551485 -83078635 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1138 2417 261 67 101 chr4 72551485 72551779 -83078341 - L1_Rod LINE L1 -1910 3937 3652 6 1138 396 0 0 0 chr4 72551779 72551823 -83078297 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1138 2417 261 67 101 chr4 72551823 72552734 -83077386 - L1_Rod LINE L1 -2196 3651 2787 6 1138 306 0 0 0 chr4 72552747 72552781 -83077339 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1138 231 175 0 0 chr4 72552811 72552868 -83077252 + GA-rich Low_complexity Low_complexity 1 57 0 6 1138 231 209 0 0 chr4 72552922 72552965 -83077155 - ORR1D1 LTR MaLR 0 374 332 7 1138 1911 186 28 5 chr4 72552966 72553356 -83076764 - L1_Mur2 LINE L1 -3136 2741 2343 7 1138 1323 248 14 55 chr4 72553369 72553736 -83076384 - Lx4B LINE L1 -4 7054 6703 7 1138 1668 186 14 74 chr4 72553737 72554167 -83075953 - L1_Mur2 LINE L1 -3522 2355 1952 7 1138 782 158 25 12 chr4 72554169 72554329 -83075791 - L1_Mur2 LINE L1 -4128 1749 1588 7 1138 25 75 0 0 chr4 72554329 72554382 -83075738 + AT_rich Low_complexity Low_complexity 1 53 0 7 1138 180 77 0 0 chr4 72556139 72556165 -83073955 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 1138 247 282 0 105 chr4 72556968 72557063 -83073057 + MTE2b-int LTR MaLR 636 720 -650 7 1138 381 139 0 48 chr4 72557110 72557193 -83072927 - L1Md_F3 LINE L1 -10 6574 6496 7 1138 270 0 0 0 chr4 72557985 72558015 -83072105 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1138 669 344 38 19 chr4 72558263 72558530 -83071590 + MT2A LTR ERVL 157 428 -105 7 1138 250 311 0 13 chr4 72558534 72558609 -83071511 + MT2A LTR ERVL 346 419 -114 7 1138 2500 305 80 29 chr4 72558665 72559837 -83070283 + MERVL_2A-int LTR ERVL 141 1410 -4351 8 1138 513 0 0 0 chr4 72559837 72559894 -83070226 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1138 2500 297 83 30 chr4 72559894 72560056 -83070064 + MERVL_2A-int LTR ERVL 1411 1595 -4166 8 1138 339 250 9 55 chr4 72560150 72560260 -83069860 - MERVL_2A-int LTR ERVL -3137 2624 2520 8 1138 638 339 11 11 chr4 72560273 72560556 -83069564 + MERVL_2A-int LTR ERVL 1864 2146 -3339 8 1138 3562 284 53 26 chr4 72560618 72561787 -83068333 + MERVL_2A-int LTR ERVL 2375 3575 -2186 8 1138 341 180 15 15 chr4 72561863 72561993 -83068127 + (TA)n Simple_repeat Simple_repeat 2 131 0 8 1138 1533 298 63 35 chr4 72562032 72562679 -83067441 + MERVL_2A-int LTR ERVL 4829 5493 -268 8 1138 771 274 0 6 chr4 72562680 72562856 -83067264 - Lx8 LINE L1 -220 7253 7079 8 1138 249 231 0 0 chr4 72562858 72562910 -83067210 + Lx8 LINE L1 7226 7277 -196 8 1138 290 324 120 6 chr4 72562910 72563093 -83067027 + MTE2b-int LTR MaLR 1366 1569 -11 7 1138 304 302 119 0 chr4 72563107 72563233 -83066887 + MTE2b LTR MaLR 5 145 -234 7 1138 466 332 235 19 chr4 72563192 72563465 -83066655 + MT2A LTR ERVL 103 434 -99 8 1138 402 288 104 0 chr4 72564680 72564805 -83065315 + ID_B1 SINE B4 80 217 -7 8 1138 210 37 0 0 chr4 72565540 72565567 -83064553 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1138 2701 219 61 170 chr4 72565740 72566881 -83063239 - RMER1B Other Other -4 1062 46 8 1138 1803 104 14 4 chr4 72567384 72567663 -83062457 + L1_Mus3 LINE L1 6355 6636 -2 8 1138 2392 291 63 81 chr4 72567801 72568249 -83061871 - Lx9 LINE L1 -205 7439 7039 9 1138 1090 82 0 0 chr4 72568249 72568396 -83061724 - B1_Mm SINE Alu 0 147 1 9 1138 2392 291 63 81 chr4 72568396 72569017 -83061103 - Lx9 LINE L1 -606 7038 6390 9 1138 198 0 0 0 chr4 72569066 72569088 -83061032 + (TA)n Simple_repeat Simple_repeat 2 23 0 9 1138 4744 270 148 59 chr4 72569212 72570978 -83059142 - Lx9 LINE L1 -1588 6056 4094 9 1138 1245 96 0 0 chr4 72570978 72571156 -83058964 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 9 1138 5973 85 1 5 chr4 72571158 72571970 -83058150 - L1Md_F2 LINE L1 -3 6579 5771 9 1138 11015 90 8 3 chr4 72571970 72573535 -83056585 - L1_Mm LINE L1 -1939 3944 2372 9 1138 399 289 59 0 chr4 72573529 72573664 -83056456 - Lx9 LINE L1 -6599 1009 867 9 1138 311 321 0 9 chr4 72573796 72573909 -83056211 - Lx9 LINE L1 -6714 894 783 9 1138 267 268 28 0 chr4 72574258 72574349 -83055771 + CT-rich Low_complexity Low_complexity 1 93 0 9 1138 400 128 26 0 chr4 72574397 72574475 -83055645 + (TA)n Simple_repeat Simple_repeat 2 81 0 9 1138 492 99 0 0 chr4 72575088 72575159 -83054961 + (CATA)n Simple_repeat Simple_repeat 2 72 0 9 1138 468 0 0 0 chr4 72576598 72576650 -83053470 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1138 669 129 0 0 chr4 72576783 72576922 -83053198 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1138 221 54 0 26 chr4 72577095 72577123 -83052997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1138 534 54 0 0 chr4 72577123 72577197 -83052923 + (CAAAC)n Simple_repeat Simple_repeat 1 74 0 1 1138 221 54 0 26 chr4 72577197 72577206 -83052914 + (CAAA)n Simple_repeat Simple_repeat 1 9 0 1 1138 251 305 89 7 chr4 72578323 72578560 -83051560 - L1MB5 LINE L1 -63 6111 5851 1 1138 3302 185 19 18 chr4 72578625 72579302 -83050818 - RLTR33 LTR ERVK 0 678 1 1 1138 265 281 88 15 chr4 72579562 72579699 -83050421 - L1M4c LINE L1 -4546 1838 1692 1 1138 1156 321 21 57 chr4 72580263 72580825 -83049295 + Lx8 LINE L1 6074 6615 -858 1 1138 1728 221 66 3 chr4 72580855 72581232 -83048888 - MT2A LTR ERVL -77 456 56 1 1138 1557 254 71 16 chr4 72581402 72581839 -83048281 + MERVL_2A-int LTR ERVL 704 1164 -4597 1 1138 24 0 0 0 chr4 72581944 72581968 -83048152 + AT_rich Low_complexity Low_complexity 1 24 0 1 1138 420 55 0 0 chr4 72582423 72582478 -83047642 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1138 726 12 0 0 chr4 72582478 72582560 -83047560 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1138 314 153 213 40 chr4 72582682 72582757 -83047363 + RLTR28 LTR ERVL 1 88 -436 1 1138 441 259 0 0 chr4 72582763 72582921 -83047199 + (TA)n Simple_repeat Simple_repeat 1 158 0 1 1138 243 0 0 0 chr4 72582921 72582948 -83047172 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1138 716 297 18 13 chr4 72583102 72583327 -83046793 - Lx7 LINE L1 -514 7182 6957 1 1138 1050 190 129 18 chr4 72583336 72583615 -83046505 + RMER1A Other Other 720 1029 -1 1 1138 2111 206 7 14 chr4 72583651 72584084 -83046036 + RLTR28 LTR ERVL 95 524 0 1 1138 261 0 0 0 chr4 72585108 72585137 -83044983 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1138 1000 252 79 11 chr4 72585357 72585622 -83044498 - Lx6 LINE L1 -436 7024 6742 1 1138 826 185 8 4 chr4 72585623 72585888 -83044232 + CT-rich Low_complexity Low_complexity 1 266 0 1 1138 1135 298 14 9 chr4 72585897 72586246 -83043874 - Lx6 LINE L1 -731 6729 6379 1 1138 1489 228 13 106 chr4 72586255 72586653 -83043467 - ORR1B1 LTR MaLR -18 376 16 1 1138 2018 225 44 55 chr4 72586653 72587270 -83042850 - L1_Mur3 LINE L1 -296 5584 4975 1 1138 315 0 0 0 chr4 72587272 72587307 -83042813 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1138 3765 158 37 2 chr4 72587307 72587949 -83042171 - Lx2 LINE L1 -27 6970 6306 1 1138 432 173 12 0 chr4 72587953 72588034 -83042086 - Lx2 LINE L1 -805 6192 6111 1 1138 4968 176 20 4 chr4 72588032 72589011 -83041109 + L1_Mur2 LINE L1 3876 4870 -1007 1 1138 6663 75 0 0 chr4 72589048 72589899 -83040221 - L1_Mus1 LINE L1 -3 6564 5714 1 1138 977 197 0 0 chr4 72589895 72590088 -83040032 + L1_Mur2 LINE L1 4868 5060 -826 1 1138 3664 184 4 4 chr4 72590087 72590773 -83039347 + Lx2 LINE L1 4901 5586 -291 1 1138 5366 189 46 16 chr4 72590780 72590894 -83039226 + Lx2 LINE L1 5872 5985 -1012 1 1138 1076 98 0 24 chr4 72590894 72591062 -83039058 + L1_Mus2 LINE L1 6401 6564 -2 1 1138 5366 189 46 16 chr4 72591062 72592040 -83038080 + Lx2 LINE L1 5986 6996 -1 1 1138 571 325 54 81 chr4 72592044 72592379 -83037741 - ORR1B1-int LTR MaLR -1021 349 24 1 1138 350 331 125 31 chr4 72592409 72592730 -83037390 - ORR1B1 LTR MaLR -4 355 5 1 1138 342 276 112 0 chr4 72592733 72592831 -83037289 + RSINE1 SINE B4 21 129 -36 1 1138 432 0 0 0 chr4 72592845 72592893 -83037227 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1138 303 104 0 0 chr4 72592914 72592962 -83037158 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1138 393 276 68 45 chr4 72593315 72593448 -83036672 + B4 SINE B4 157 292 0 1 1138 566 75 0 0 chr4 72593726 72593806 -83036314 + L1_Mus2 LINE L1 6487 6566 0 1 1138 935 257 81 132 chr4 72594206 72594600 -83035520 + ORR1C1 LTR MaLR 5 378 0 1 1138 25 51 0 0 chr4 72594778 72594817 -83035303 + AT_rich Low_complexity Low_complexity 1 39 0 1 1138 524 349 44 28 chr4 72595031 72595279 -83034841 + MTD LTR MaLR 1 252 -107 1 1138 477 0 0 0 chr4 72595369 72595422 -83034698 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1138 386 356 49 31 chr4 72595423 72595649 -83034471 + MTD-int LTR MaLR 26 255 -1115 1 1138 324 0 0 0 chr4 72595653 72595689 -83034431 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1138 1247 265 96 14 chr4 72595866 72596240 -83033880 + MTD LTR MaLR 12 406 -13 1 1138 255 234 108 47 chr4 72596469 72596617 -83033503 + L1M4 LINE L1 2582 2738 -3408 1 1138 243 0 0 0 chr4 72597881 72597908 -83032212 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 1138 7888 138 18 26 chr4 72597918 72598739 -83031381 - Lx3A LINE L1 -10 6971 6153 1 1138 4723 90 13 60 chr4 72598739 72599527 -83030593 + RMER17A LTR ERVK 1 751 0 1 1138 7888 138 18 26 chr4 72599527 72600033 -83030087 - Lx3A LINE L1 -829 6152 5654 1 1138 327 319 157 82 chr4 72602149 72602480 -83027640 - MLT1A0 LTR MaLR -3 362 7 1 1138 195 69 0 0 chr4 72602669 72602698 -83027422 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1138 286 23 23 23 chr4 72604723 72604767 -83025353 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 1 1138 500 246 23 31 chr4 72604767 72604897 -83025223 - Lx4A LINE L1 -24 7034 6906 1 1138 3093 67 2 9 chr4 72604978 72605397 -83024723 + MT2C_Mm LTR ERVL 60 475 0 1 1138 22 35 0 0 chr4 72606423 72606452 -83023668 + AT_rich Low_complexity Low_complexity 1 29 0 1 1138 260 297 0 0 chr4 72606640 72606714 -83023406 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1138 22 35 0 0 chr4 72607024 72607053 -83023067 + AT_rich Low_complexity Low_complexity 1 29 0 1 1138 233 29 0 29 chr4 72607128 72607163 -83022957 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1138 324 64 0 0 chr4 72607245 72607292 -83022828 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1138 12668 64 14 1 chr4 72608561 72610886 -83019234 - L1Md_F2 LINE L1 -13 6569 4214 1 1138 203 0 0 36 chr4 72610893 72610921 -83019199 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1138 188 250 0 15 chr4 72610929 72610994 -83019126 + CT-rich Low_complexity Low_complexity 3 66 0 1 1138 332 279 76 15 chr4 72612030 72612161 -83017959 + B1F2 SINE Alu 1 139 -10 1 1138 291 114 0 0 chr4 72612165 72612209 -83017911 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 1 1138 247 268 110 0 chr4 72612313 72612395 -83017725 - BC1_Mm scRNA scRNA -61 91 1 1 1138 1299 62 0 0 chr4 72613035 72613212 -83016908 - MusHAL1 LINE L1 -2067 645 469 1 1138 2987 153 19 16 chr4 72613192 72613576 -83016544 + Lx LINE L1 5363 5752 -131 1 142 2893 49 2 102 chr4 72613576 72614007 -83016113 - RLTR10 LTR ERVK -2 388 1 1 1139 2987 155 20 17 chr4 72614007 72614165 -83015955 + Lx LINE L1 5751 5905 -1068 1 1139 2911 184 30 0 chr4 72614165 72614708 -83015412 + Lx LINE L1 6096 6654 0 1 1139 1780 163 24 24 chr4 72614708 72614722 -83015398 + Lx3B LINE L1 5906 5919 -1054 1 1139 289 373 15 53 chr4 72614932 72615065 -83015055 - B1F SINE Alu -4 145 18 1 1139 192 125 0 0 chr4 72615140 72615172 -83014948 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1139 25 31 0 0 chr4 72615980 72616012 -83014108 + AT_rich Low_complexity Low_complexity 1 32 0 1 1139 229 405 176 0 chr4 72616026 72616157 -83013963 + RSINE1 SINE B4 2 155 -10 1 1139 34860 66 2 3 chr4 72616898 72622975 -83007145 - L1Md_F2 LINE L1 -14 6571 405 1 1139 1953 189 113 16 chr4 72623578 72624013 -83006107 - RLTR24 LTR ERV1 -39 490 14 1 1139 579 297 35 30 chr4 72624021 72624219 -83005901 - MTEa LTR MaLR -178 201 3 1 1139 23 86 0 0 chr4 72624468 72624526 -83005594 + AT_rich Low_complexity Low_complexity 1 58 0 1 1139 338 321 0 0 chr4 72624570 72624654 -83005466 + RSINE1 SINE B4 13 96 -69 1 1139 5357 40 6 0 chr4 72625596 72626248 -83003872 - L1Md_F3 LINE L1 -15 6569 5914 1 1139 204 67 0 0 chr4 72626595 72626625 -83003495 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1139 378 228 12 12 chr4 72626865 72626945 -83003175 + RLTR42-int LTR ERVK 1697 1776 -3746 1 1139 6735 18 1 0 chr4 72627032 72627808 -83002312 + L1Md_T LINE L1 4810 5586 -297 1 1139 8429 33 0 0 chr4 72627808 72628804 -83001316 + L1Md_T LINE L1 5587 6582 0 1 1139 33 43 0 0 chr4 72629046 72629093 -83001027 + AT_rich Low_complexity Low_complexity 1 47 0 1 1139 1037 311 57 29 chr4 72629490 72629841 -83000279 + ORR1E-int LTR MaLR 1192 1552 -28 1 1139 369 358 68 35 chr4 72629821 72630149 -82999971 + ORR1E LTR MaLR 6 374 -5 1 1139 30 0 0 0 chr4 72630171 72630201 -82999919 + AT_rich Low_complexity Low_complexity 1 30 0 1 1139 325 343 5 34 chr4 72630375 72630580 -82999540 + L1_Rod LINE L1 5649 5847 0 1 1139 456 86 0 0 chr4 72630645 72630715 -82999405 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1139 349 374 33 6 chr4 72630853 72631036 -82999084 + Lx8 LINE L1 6823 7010 -463 1 1139 1227 314 38 81 chr4 72631044 72631623 -82998497 + Lx8 LINE L1 6827 7380 -93 1 1139 244 428 32 27 chr4 72632716 72632901 -82997219 - Tigger5 DNA MER2_type -2209 197 12 1 1139 232 309 0 60 chr4 72632920 72633020 -82997100 - RMER5 LTR ERV1 -16 518 425 1 1139 668 289 42 34 chr4 72633523 72633686 -82996434 - RMER5 LTR ERV1 -252 282 122 1 1139 450 0 0 0 chr4 72633686 72633736 -82996384 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1139 668 289 42 34 chr4 72633736 72633837 -82996283 - RMER5 LTR ERV1 -413 121 18 1 1139 470 283 88 14 chr4 72633865 72634080 -82996040 - L1MB1 LINE L1 -73 6095 5865 1 1139 2483 185 34 50 chr4 72634334 72634504 -82995616 + RLTR19 LTR ERVK 3 177 -322 1 1139 1932 196 29 0 chr4 72634504 72634882 -82995238 + Lx2B LINE L1 6597 6985 -15 1 1139 2483 185 34 50 chr4 72634882 72635216 -82994904 + RLTR19 LTR ERVK 178 499 0 1 1139 445 226 11 0 chr4 72635525 72635702 -82994418 + GA-rich Low_complexity Low_complexity 2 180 0 1 1139 225 246 0 16 chr4 72635703 72635765 -82994355 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 1 1139 273 283 19 19 chr4 72637482 72637590 -82992530 + CT-rich Low_complexity Low_complexity 5 112 0 1 1139 1753 137 7 10 chr4 72637715 72638017 -82992103 - L1_Mus3 LINE L1 -5 6633 6333 1 1139 242 182 0 35 chr4 72639569 72639626 -82990494 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1139 1075 90 7 0 chr4 72639786 72639930 -82990190 + B1_Mus2 SINE Alu 2 146 -1 1 1139 831 307 125 10 chr4 72640096 72640481 -82989639 - Lx8 LINE L1 -470 7003 6575 1 1139 805 284 13 30 chr4 72640500 72640732 -82989388 - Lx8 LINE L1 -983 6490 6263 1 1139 583 278 124 142 chr4 72640743 72641129 -82988991 + MTE2b LTR MaLR 1 379 0 1 1139 7240 128 33 9 chr4 72641330 72642499 -82987621 - Lx3A LINE L1 -8 6973 5776 1 1139 1534 86 43 0 chr4 72642500 72642734 -82987386 + L1_Mur1 LINE L1 4364 4607 -1279 1 1139 371 261 140 18 chr4 72644025 72644247 -82985873 - L1MA4A LINE L1 -371 5932 5684 1 1139 213 39 0 0 chr4 72644330 72644356 -82985764 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1139 195 129 0 0 chr4 72644493 72644524 -82985596 + (CTG)n Simple_repeat Simple_repeat 2 32 0 2 1139 236 154 19 0 chr4 72644547 72644599 -82985521 - Lx9 LINE L1 -15 7629 7577 2 1139 25 31 0 0 chr4 72644603 72644635 -82985485 + AT_rich Low_complexity Low_complexity 1 32 0 2 1139 220 91 45 0 chr4 72644640 72644684 -82985436 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1139 3205 276 42 33 chr4 72644686 72645710 -82984410 - Lx9 LINE L1 -180 7464 6432 2 1139 216 0 0 0 chr4 72645711 72645735 -82984385 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1139 632 284 60 4 chr4 72645783 72646083 -82984037 + L1M2 LINE L1 4312 4664 -1479 2 1139 201 89 89 0 chr4 72646135 72646191 -82983929 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 2 1139 660 124 0 0 chr4 72646278 72646383 -82983737 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1139 216 0 0 0 chr4 72646383 72646407 -82983713 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1139 309 184 138 0 chr4 72646438 72646525 -82983595 + L1_Rod LINE L1 4635 4733 -1114 2 1139 208 237 0 0 chr4 72647099 72647158 -82982962 + T-rich Low_complexity Low_complexity 1 59 0 2 1139 590 281 64 52 chr4 72647494 72647667 -82982453 + B4A SINE B4 112 286 -6 2 1139 1794 70 48 4 chr4 72647762 72648033 -82982087 - L1VL4 LINE L1 -2342 1217 935 2 1139 189 0 0 0 chr4 72648033 72648054 -82982066 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1139 8147 47 4 1 chr4 72648085 72649727 -82980393 - L1Md_F2 LINE L1 0 6582 4938 2 1139 12906 52 108 0 chr4 72649728 72651472 -82978648 + L1Md_T LINE L1 3655 5586 -297 2 1139 8138 42 6 0 chr4 72651473 72652459 -82977661 + L1Md_T LINE L1 5588 6579 -3 2 1139 5428 136 42 0 chr4 72652488 72653378 -82976742 - L1VL4 LINE L1 -5353 949 37 2 1139 48 18 0 0 chr4 72654307 72654362 -82975758 + AT_rich Low_complexity Low_complexity 1 55 0 2 1139 1068 273 59 38 chr4 72654382 72654702 -82975418 + MTD LTR MaLR 1 327 -92 2 1139 2969 159 39 0 chr4 72654871 72655528 -82974592 + L1VL4 LINE L1 1 501 -5801 2 1139 468 0 0 0 chr4 72655817 72655869 -82974251 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1139 250 350 30 0 chr4 72655955 72656055 -82974065 + PB1D10 SINE Alu 15 117 0 2 1139 273 363 60 33 chr4 72656065 72656216 -82973904 + RSINE1 SINE B4 9 163 -2 2 1139 22 56 0 0 chr4 72656238 72656274 -82973846 + AT_rich Low_complexity Low_complexity 1 36 0 2 1139 484 372 68 19 chr4 72657050 72657410 -82972710 + ERVL-E-int LTR ERVL 2864 3201 -2466 2 1139 2136 339 128 40 chr4 72658017 72658142 -82971978 - Lx8 LINE L1 -3 7470 7319 2 1139 432 0 0 0 chr4 72658142 72658190 -82971930 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1139 2136 311 101 51 chr4 72658190 72660115 -82970005 - Lx8 LINE L1 -155 7318 5297 2 1139 1356 328 23 32 chr4 72660342 72660903 -82969217 - Lx9 LINE L1 -182 7462 6907 2 1139 1078 329 86 36 chr4 72661041 72661475 -82968645 - Lx8 LINE L1 -1000 4880 4424 2 1139 2963 34 0 0 chr4 72661475 72661827 -82968293 + L1Md_T LINE L1 6229 6580 -2 2 1139 1078 315 79 33 chr4 72661827 72662618 -82967502 - Lx8 LINE L1 -1457 4423 3635 2 1139 234 276 9 28 chr4 72663044 72663152 -82966968 + L1MEe LINE L1 871 976 -3878 2 1139 1251 283 117 10 chr4 72663878 72664288 -82965832 + RMER15 LTR ERVL 27 480 -95 2 1139 4527 88 2 0 chr4 72664292 72664893 -82965227 + L1_Mus1 LINE L1 5965 6566 -1 2 1139 22 80 0 0 chr4 72665005 72665055 -82965065 + AT_rich Low_complexity Low_complexity 1 50 0 2 1139 2960 61 0 20 chr4 72665100 72665499 -82964621 - L1Md_F2 LINE L1 0 6582 6192 2 1139 439 257 9 105 chr4 72665850 72666027 -82964093 + ORR1C1 LTR MaLR 40 191 -183 2 1139 395 19 19 0 chr4 72666029 72666082 -82964038 - MMERVK10C-int LTR ERVK -7527 54 1 2 1139 3365 44 0 128 chr4 72666082 72666582 -82963538 - RLTR10C LTR ERVK 0 436 1 2 1139 1186 223 25 12 chr4 72666588 72666833 -82963287 + ORR1C1 LTR MaLR 129 376 -2 2 1139 866 328 75 28 chr4 72666908 72667416 -82962704 + RMER15-int LTR ERVL 4202 4733 -266 2 1139 2558 117 8 10 chr4 72667571 72667961 -82962159 + Lx3C LINE L1 6197 6585 -391 2 1139 6921 111 3 1 chr4 72668036 72669019 -82961101 - L1_Mus4 LINE L1 -8 6628 5644 2 1139 1012 112 6 0 chr4 72669016 72669177 -82960943 + L1_Mur2 LINE L1 3616 3777 -2103 2 1139 4153 139 56 0 chr4 72669173 72670041 -82960079 - L1_Mus4 LINE L1 -654 5982 5053 2 1139 4084 124 8 5 chr4 72670042 72670664 -82959456 + L1_Mus4 LINE L1 6009 6632 -4 2 1139 1391 174 20 40 chr4 72670674 72670916 -82959204 + L1_Mur2 LINE L1 3762 4005 -1872 2 1139 4167 40 0 2 chr4 72670916 72671415 -82958705 + L1Md_F2 LINE L1 6081 6578 -4 2 1139 1391 174 20 40 chr4 72671415 72671472 -82958648 + L1_Mur2 LINE L1 4006 4055 -1822 2 1139 1164 68 0 0 chr4 72671918 72672065 -82958055 + B1_Mus1 SINE Alu 2 148 0 2 1139 214 416 87 29 chr4 72672390 72672598 -82957522 - B4A SINE B4 -2 290 71 2 1139 316 363 57 10 chr4 72672702 72672894 -82957226 - L1MC3 LINE L1 -106 7889 7689 2 1139 27 0 0 0 chr4 72672919 72672946 -82957174 + AT_rich Low_complexity Low_complexity 1 27 0 2 1139 406 356 121 18 chr4 72672950 72673339 -82956781 - L1MC3 LINE L1 -417 7368 6940 2 1139 216 224 20 0 chr4 72674644 72674693 -82955427 + GA-rich Low_complexity Low_complexity 1 50 0 2 1139 885 287 63 39 chr4 72674981 72675438 -82954682 - L1_Rod LINE L1 -224 5623 5156 2 1139 1284 143 23 0 chr4 72675503 72675719 -82954401 + Lx2A1 LINE L1 5758 5978 -1030 2 1139 2148 208 14 9 chr4 72675720 72676161 -82953959 - RMER12 LTR ERVK -879 443 1 2 1139 1013 293 37 92 chr4 72676162 72676857 -82953263 - L1_Rod LINE L1 -1712 4135 3479 2 1139 1830 181 17 6 chr4 72676866 72677216 -82952904 + RLTR15 LTR ERVK 6 359 0 2 1139 2392 287 119 65 chr4 72678112 72680464 -82949656 + MYSERV-int LTR ERVK 3774 6252 -298 2 1139 1155 240 58 37 chr4 72680491 72680867 -82949253 + Lx7 LINE L1 5795 6178 -1518 2 1139 5582 215 33 38 chr4 72680867 72682016 -82948104 - L1_Mur3 LINE L1 -2805 3075 1910 2 1139 242 91 0 0 chr4 72682016 72682049 -82948071 - U2 snRNA snRNA -155 33 1 2 1139 5582 215 33 38 chr4 72682049 72682403 -82947717 - L1_Mur3 LINE L1 -2805 1909 1549 2 1139 3073 32 58 0 chr4 72682415 72682792 -82947328 - L1Md_A LINE L1 0 6582 6184 2 1139 970 245 74 20 chr4 72682967 72683511 -82946609 + L1_Mur2 LINE L1 863 1394 -4483 2 1139 706 104 27 14 chr4 72683998 72684144 -82945976 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 2 1139 1185 332 41 23 chr4 72686389 72686885 -82943235 - Lx5 LINE L1 -1 7049 6567 2 1139 2246 183 57 18 chr4 72686879 72687102 -82943018 - L1_Mur2 LINE L1 -1800 4080 3836 2 1139 459 0 0 0 chr4 72687102 72687153 -82942967 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1139 2246 183 57 18 chr4 72687153 72687425 -82942695 - L1_Mur2 LINE L1 -2045 3835 3566 2 1139 5047 219 82 42 chr4 72687411 72689394 -82940726 - L1_Mur2 LINE L1 -2923 2954 908 2 1139 240 130 18 36 chr4 72689415 72689471 -82940649 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 1139 23 33 0 0 chr4 72689963 72689993 -82940127 + AT_rich Low_complexity Low_complexity 1 30 0 2 1139 4719 81 3 9 chr4 72691386 72692021 -82938099 + L1_Mus1 LINE L1 5937 6567 0 2 1139 1361 56 0 6 chr4 72692057 72692237 -82937883 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 1139 255 61 0 0 chr4 72692237 72692270 -82937850 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2 1139 6158 134 33 3 chr4 72692279 72693283 -82936837 - L1_Mm LINE L1 -312 5571 4538 2 1139 3615 111 11 4 chr4 72693285 72693828 -82936292 + L1_Mus3 LINE L1 6092 6638 0 2 1139 289 176 0 86 chr4 72694335 72694428 -82935692 + RMER17C LTR ERVK 178 262 -148 2 1139 793 109 32 6 chr4 72694476 72694633 -82935487 - L1_Mus4 LINE L1 0 6636 6476 2 1139 489 120 0 0 chr4 72694632 72694707 -82935413 + MusHAL1 LINE L1 1385 1459 -1253 2 1139 424 78 14 73 chr4 72694714 72694803 -82935317 - B1_Mus2 SINE Alu 0 147 33 2 1139 1512 28 0 0 chr4 72694803 72694979 -82935141 - L1Md_F2 LINE L1 -300 6282 6107 2 1139 596 109 19 21 chr4 72694979 72695099 -82935021 - B1_Mm SINE Alu -28 119 1 2 1139 1480 93 62 4 chr4 72695099 72695326 -82934794 + MusHAL1 LINE L1 1442 1681 -1031 2 1139 333 0 0 0 chr4 72697503 72697540 -82932580 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1139 501 151 0 0 chr4 72699962 72700048 -82930072 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 1139 1784 71 0 4 chr4 72700048 72700287 -82929833 - L1Md_F2 LINE L1 -8 6574 6337 2 1139 336 321 26 56 chr4 72700562 72700757 -82929363 - Lx7 LINE L1 -450 7246 7058 2 1139 399 301 81 14 chr4 72701382 72701530 -82928590 + MTD LTR MaLR 1 158 -261 2 1139 227 262 173 12 chr4 72701570 72701651 -82928469 + MTD LTR MaLR 221 314 -105 2 1139 323 286 101 22 chr4 72702229 72702408 -82927712 - MER53 DNA hAT 0 193 1 2 1139 277 333 45 0 chr4 72702408 72702486 -82927634 + LTR16C LTR ERVL 405 487 -2 2 1139 1005 128 0 16 chr4 72703014 72703197 -82926923 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1139 291 54 0 0 chr4 72703197 72703234 -82926886 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2 1139 501 340 24 49 chr4 72703238 72703402 -82926718 - RSINE1 SINE B4 -2 163 4 2 1139 297 100 0 0 chr4 72704703 72704753 -82925367 + (CATA)n Simple_repeat Simple_repeat 1 50 0 2 1139 2091 199 12 14 chr4 72707155 72707577 -82922543 - MTC LTR MaLR 0 421 1 2 1139 342 223 155 5 chr4 72708454 72708570 -82921550 + B1_Mur2 SINE Alu 7 137 -12 2 1139 540 312 71 21 chr4 72709620 72709859 -82920261 - MER2 DNA MER2_type -8 337 87 2 1139 215 329 0 0 chr4 72710192 72710209 -82919911 + polypurine Low_complexity Low_complexity 6 22 0 2 1139 913 62 7 27 chr4 72710209 72710359 -82919761 + (GGAGA)n Simple_repeat Simple_repeat 3 149 0 2 1139 215 329 0 0 chr4 72710359 72710414 -82919706 + polypurine Low_complexity Low_complexity 23 77 0 2 1139 208 296 0 0 chr4 72711150 72711194 -82918926 - L2b LINE L2 -22 3353 3310 2 1139 271 356 51 41 chr4 72712436 72712632 -82917488 - MER3 DNA MER1_type -11 198 1 2 1139 211 204 0 0 chr4 72712948 72712992 -82917128 + A-rich Low_complexity Low_complexity 1 44 0 2 1139 238 247 12 72 chr4 72714074 72714157 -82915963 + MLT1K LTR MaLR 509 586 -9 2 1139 213 175 0 0 chr4 72714437 72714477 -82915643 + A-rich Low_complexity Low_complexity 1 40 0 2 1139 817 185 0 11 chr4 72714468 72714648 -82915472 + GA-rich Low_complexity Low_complexity 2 179 0 2 1139 602 285 28 62 chr4 72715392 72715568 -82914552 - MTEa LTR MaLR -209 170 1 2 1139 379 174 23 0 chr4 72716032 72716118 -82914002 + CT-rich Low_complexity Low_complexity 3 90 0 3 1139 351 60 0 0 chr4 72716276 72716326 -82913794 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 3 1139 1464 194 34 29 chr4 72716375 72716416 -82913704 + L1_Rod LINE L1 1005 1037 -6571 3 1139 903 222 42 5 chr4 72716416 72716633 -82913487 + URR1A DNA MER1_type 2 226 0 3 1139 1464 194 38 25 chr4 72716633 72716989 -82913131 + L1_Rod LINE L1 1038 1404 -4443 3 1139 493 284 106 32 chr4 72717162 72717351 -82912769 - L1_Rod LINE L1 -6683 489 287 3 1139 336 255 10 10 chr4 72717357 72717456 -82912664 + L1_Rod LINE L1 2680 2778 -3069 3 1139 4350 233 74 30 chr4 72717458 72718907 -82911213 + L1_Rod LINE L1 1479 2990 -2857 3 1139 22 0 0 0 chr4 72719834 72719856 -82910264 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 333 102 0 0 chr4 72720407 72720466 -82909654 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1139 1374 269 76 18 chr4 72720940 72721323 -82908797 + MTD LTR MaLR 15 419 0 3 1139 21 36 0 0 chr4 72721538 72721566 -82908554 + AT_rich Low_complexity Low_complexity 1 28 0 3 1139 993 136 0 0 chr4 72721566 72721713 -82908407 + B1_Mus2 SINE Alu 1 147 0 3 1139 25 51 0 0 chr4 72721779 72721818 -82908302 + AT_rich Low_complexity Low_complexity 1 39 0 3 1139 207 188 0 0 chr4 72721932 72721980 -82908140 + A-rich Low_complexity Low_complexity 1 48 0 3 1139 270 56 0 0 chr4 72722043 72722079 -82908041 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 3 1139 252 186 14 0 chr4 72722124 72722194 -82907926 + L1M4 LINE L1 1274 1344 -5198 3 1139 1802 350 92 30 chr4 72722461 72723569 -82906551 + Lx8 LINE L1 6200 7376 -97 3 1139 1137 264 39 35 chr4 72723574 72723795 -82906325 + Lx9 LINE L1 7085 7305 -339 3 1139 2009 204 10 17 chr4 72723795 72724205 -82905915 - MTB_Mm LTR MaLR 0 407 1 3 1139 1137 264 39 35 chr4 72724205 72724414 -82905706 + Lx9 LINE L1 7306 7517 -127 3 1139 333 0 0 0 chr4 72724426 72724463 -82905657 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1139 1174 282 99 14 chr4 72725522 72726007 -82904113 - RMER5 LTR ERV1 -5 529 4 3 1139 206 205 0 0 chr4 72726306 72726345 -82903775 + (CCA)n Simple_repeat Simple_repeat 2 40 0 3 1139 441 0 0 0 chr4 72726429 72726478 -82903642 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 3 1139 1097 70 7 0 chr4 72726478 72726621 -82903499 - B1_Mm SINE Alu -3 144 1 3 1139 21 0 0 0 chr4 72726876 72726897 -82903223 + AT_rich Low_complexity Low_complexity 1 21 0 3 1139 1754 329 45 25 chr4 72727432 72728202 -82901918 - Lx8 LINE L1 -231 7242 6457 3 1139 27925 174 72 36 chr4 72728380 72730046 -82900074 + Lx3_Mus LINE L1 208 1971 -3915 3 1139 195 69 0 0 chr4 72730046 72730075 -82900045 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1139 27925 108 48 19 chr4 72730075 72732559 -82897561 + Lx3_Mus LINE L1 1972 4607 -1279 3 1139 8031 45 3 3 chr4 72732559 72733553 -82896567 + L1Md_F2 LINE L1 5588 6581 -1 3 1139 27925 115 43 45 chr4 72733553 72736015 -82894105 + Lx3_Mus LINE L1 4608 7001 -8 3 1139 247 238 58 35 chr4 72736060 72736144 -82893976 - MTE-int LTR MaLR -118 1462 1377 3 1139 1488 254 38 80 chr4 72736144 72736571 -82893549 - MTC LTR MaLR 0 421 13 3 1139 1627 330 89 10 chr4 72736576 72737195 -82892925 - MTE-int LTR MaLR -311 1269 602 3 1139 1025 323 78 7 chr4 72737212 72737621 -82892499 - MTE-int LTR MaLR -1050 530 93 3 1139 617 187 98 28 chr4 72738046 72738189 -82891931 + Lx4B LINE L1 6902 7054 -4 3 1139 297 0 0 0 chr4 72738277 72738310 -82891810 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1139 1055 127 6 0 chr4 72738620 72738793 -82891327 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 3 1139 392 143 0 13 chr4 72738799 72738859 -82891261 + polypurine Low_complexity Low_complexity 2 60 0 3 1139 1398 56 0 0 chr4 72738859 72739039 -82891081 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1139 392 143 0 13 chr4 72739039 72739056 -82891064 + polypurine Low_complexity Low_complexity 61 77 0 3 1139 26 0 0 0 chr4 72739093 72739119 -82891001 + AT_rich Low_complexity Low_complexity 1 26 0 3 1139 770 286 61 101 chr4 72739399 72739757 -82890363 + MTEb LTR MaLR 38 379 0 3 1139 1349 40 17 0 chr4 72739782 72739956 -82890164 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 3 1139 342 0 0 0 chr4 72739956 72739993 -82890127 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1139 432 0 0 0 chr4 72739993 72740040 -82890080 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1139 232 274 110 50 chr4 72740046 72740146 -82889974 + MTE-int LTR MaLR 47 152 -1428 3 1139 6023 106 34 4 chr4 72740147 72741372 -82888748 + L1VL2 LINE L1 106 1371 -2244 3 1139 3014 176 116 3 chr4 72741369 72741957 -82888163 - Lx4B LINE L1 -439 6619 5966 3 1139 4300 171 50 17 chr4 72741954 72742776 -82887344 + L1_Mur2 LINE L1 4379 5230 -647 3 1139 477 0 0 0 chr4 72742776 72742829 -82887291 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1139 4300 171 50 17 chr4 72742829 72742877 -82887243 + L1_Mur2 LINE L1 5231 5278 -599 3 1139 231 226 16 16 chr4 72743134 72743197 -82886923 - MER53 DNA hAT -125 68 6 3 1140 902 318 43 12 chr4 72745325 72745653 -82884467 - RMER5 LTR ERV1 -154 380 43 3 1140 806 231 22 77 chr4 72745706 72745978 -82884142 + L1_Mur1 LINE L1 3 259 -6725 3 1140 28075 111 21 5 chr4 72745981 72749262 -82880858 + L1_Mur1 LINE L1 1320 4665 -1221 3 1140 180 77 0 0 chr4 72749262 72749288 -82880832 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 1140 28075 111 21 5 chr4 72749288 72749881 -82880239 + L1_Mur1 LINE L1 4666 5271 -615 3 1140 423 0 0 0 chr4 72749881 72749928 -82880192 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1140 28075 111 21 5 chr4 72749928 72750445 -82879675 + L1_Mur1 LINE L1 5272 5782 -104 3 1140 933 182 24 10 chr4 72750446 72750651 -82879469 + Lx3_Mus LINE L1 6794 7001 -8 3 1140 7695 123 13 11 chr4 72750650 72751877 -82878243 + Lx3_Mus LINE L1 5780 7009 0 3 1140 240 86 0 0 chr4 72752406 72752441 -82877679 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1140 252 106 14 43 chr4 72752559 72752628 -82877492 + T-rich Low_complexity Low_complexity 4 70 0 3 1140 180 0 0 0 chr4 72753170 72753190 -82876930 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1140 367 188 14 14 chr4 72753651 72753721 -82876399 + MTD LTR MaLR 13 82 -339 3 1140 392 255 182 13 chr4 72753703 72753862 -82876258 + MTD LTR MaLR 234 419 0 3 1140 504 0 0 0 chr4 72755778 72755834 -82874286 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1140 189 0 0 0 chr4 72756716 72756737 -82873383 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1140 372 119 0 0 chr4 72756885 72756944 -82873176 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1140 2776 183 38 0 chr4 72757132 72757662 -82872458 - Lx3C LINE L1 -835 6141 5592 3 1140 577 85 110 28 chr4 72758344 72758453 -82871667 + L1_Mus1 LINE L1 6450 6567 0 3 1140 1863 299 74 42 chr4 72758929 72759724 -82870396 - MERVL_2A-int LTR ERVL -513 5248 4428 3 1140 265 288 88 47 chr4 72759786 72759957 -82870163 - MERVL_2A-int LTR ERVL -1767 3718 3541 3 1140 5745 86 6 5 chr4 72759958 72760760 -82869360 - Lx3_Mus LINE L1 -330 5556 4754 3 1140 8189 86 32 5 chr4 72760761 72761110 -82869010 + Lx3_Mus LINE L1 5557 5918 -1091 3 1140 216 0 0 0 chr4 72761110 72761134 -82868986 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1140 8189 86 34 5 chr4 72761134 72761978 -82868142 + Lx3_Mus LINE L1 5919 6779 -230 3 1140 215 73 49 0 chr4 72762005 72762046 -82868074 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 3 1140 481 267 9 0 chr4 72762075 72762191 -82867929 - MERVL_2A-int LTR ERVL -2141 3620 3504 3 1140 871 315 13 13 chr4 72762194 72762493 -82867627 - MERVL_2A-int LTR ERVL -2971 2790 2492 3 1140 213 196 0 0 chr4 72762497 72762548 -82867572 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 3 1140 1137 328 39 31 chr4 72762558 72763042 -82867078 - MERVL_2A-int LTR ERVL -3285 2476 1989 3 1140 647 341 142 14 chr4 72763034 72763706 -82866414 - MERVL_2A-int LTR ERVL -3859 1855 1154 3 1140 1245 355 61 43 chr4 72763711 72764728 -82865392 - MERVL_2A-int LTR ERVL -4676 1038 4 3 1140 544 317 75 35 chr4 72764731 72764986 -82865134 - MT2A LTR ERVL 0 533 269 3 1140 270 340 32 0 chr4 72766846 72766940 -82863180 - MTE2b LTR MaLR -79 300 204 3 1140 5345 166 3 0 chr4 72766971 72767883 -82862237 - Lx LINE L1 0 5883 4969 3 1140 1305 133 5 0 chr4 72767888 72768091 -82862029 + Lx LINE L1 5920 6123 -531 3 1140 1758 142 52 25 chr4 72768091 72768416 -82861704 + Lx LINE L1 6318 6651 -3 3 1140 527 310 86 0 chr4 72768421 72768618 -82861502 - MTE2b LTR MaLR -163 216 3 3 1140 2264 329 113 27 chr4 72768620 72769557 -82860563 - MTE2b-int LTR MaLR 0 1580 563 3 1140 848 287 65 40 chr4 72769674 72769950 -82860170 - MTE2b-int LTR MaLR -1297 283 1 3 1140 1294 325 22 0 chr4 72769950 72770313 -82859807 - MTE2b LTR MaLR 0 379 9 3 1140 314 45 0 22 chr4 72770348 72770393 -82859727 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1140 407 340 25 21 chr4 72771160 72771400 -82858720 - L1MB5 LINE L1 -20 6154 5914 3 1140 225 308 90 0 chr4 72774569 72774647 -82855473 - MER5A DNA MER1_type -93 96 12 3 1140 347 355 77 81 chr4 72775231 72775528 -82854592 + ORR1E LTR MaLR 64 359 0 3 1140 694 288 61 34 chr4 72776512 72776918 -82853202 - RLTR15 LTR ERVK -16 343 42 3 1140 4290 182 60 58 chr4 72776975 72777853 -82852267 - MYSERV6-int LTR ERVK -17 8942 8044 3 1140 1139 58 0 0 chr4 72777853 72777992 -82852128 + B1_Mm SINE Alu 1 139 -8 3 1140 315 0 0 0 chr4 72777992 72778027 -82852093 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1140 4290 182 60 58 chr4 72778027 72778128 -82851992 - MYSERV6-int LTR ERVK -916 8043 7959 3 1140 1709 28 0 19 chr4 72778128 72778343 -82851777 + L1Md_F2 LINE L1 6370 6580 -2 3 1140 4290 182 57 67 chr4 72778343 72778492 -82851628 - MYSERV6-int LTR ERVK -1001 7958 7849 3 1140 512 211 58 102 chr4 72778492 72778721 -82851399 - RMER4A LTR ERVK -17 568 251 3 1140 1633 285 30 47 chr4 72778723 72779653 -82850467 - MYSERV6-int LTR ERVK -1762 4788 4255 3 1140 583 153 12 6 chr4 72779655 72779819 -82850301 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 3 1140 1155 299 19 42 chr4 72779821 72780295 -82849825 - MurERV4-int LTR ERVK -255 5005 4543 3 1140 2931 89 10 7 chr4 72780689 72781105 -82849015 - L1_Mus3 LINE L1 -6 6632 6216 3 1140 1132 63 0 0 chr4 72781105 72781248 -82848872 + L1_Mus3 LINE L1 6075 6217 -421 3 1140 589 269 58 40 chr4 72781875 72782150 -82847970 - RLTR15 LTR ERVK -8 351 72 3 1140 285 327 91 26 chr4 72782233 72782387 -82847733 - RLTR12B LTR ERVK -354 174 11 3 1140 342 363 29 29 chr4 72784055 72784296 -82845824 + Lx8 LINE L1 6947 7187 -286 3 1140 4996 203 16 2 chr4 72784308 72785315 -82844805 + L1_Mur1 LINE L1 4826 5846 -40 3 1140 1168 117 56 42 chr4 72785317 72785532 -82844588 + Lx LINE L1 6437 6654 0 3 1140 6419 152 54 2 chr4 72785574 72786697 -82843423 + Lx2A LINE L1 5827 7008 0 3 1140 206 263 35 0 chr4 72788109 72788166 -82841954 + GA-rich Low_complexity Low_complexity 6 64 0 3 1140 232 175 16 16 chr4 72788194 72788258 -82841862 + GA-rich Low_complexity Low_complexity 3 66 0 3 1140 683 183 10 0 chr4 72788395 72788526 -82841594 + B1_Mus2 SINE Alu 1 143 -7 3 1140 459 0 0 0 chr4 72788543 72788594 -82841526 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1140 21 0 0 0 chr4 72788624 72788645 -82841475 + AT_rich Low_complexity Low_complexity 1 21 0 3 1140 8047 153 17 12 chr4 72788645 72788856 -82841264 - Lx3C LINE L1 -3 6973 6765 3 1140 492 62 0 0 chr4 72788856 72788920 -82841200 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1140 8047 136 31 16 chr4 72788920 72790886 -82839234 - Lx3C LINE L1 -212 6764 4765 3 1140 243 0 0 0 chr4 72790928 72790955 -82839165 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1140 3005 68 5 10 chr4 72791023 72791421 -82838699 - MTA_Mm LTR MaLR 0 396 1 3 1140 359 371 44 12 chr4 72792315 72792563 -82837557 - MLT1B LTR MaLR -112 278 23 3 1140 1749 215 31 49 chr4 72792694 72793119 -82837001 + MTC LTR MaLR 5 421 0 3 1140 1393 281 29 7 chr4 72794053 72794465 -82835655 - MTC LTR MaLR 0 421 1 3 1140 1447 205 10 104 chr4 72794640 72795043 -82835077 + ORR1B2 LTR MaLR 3 367 0 3 1140 794 21 0 0 chr4 72795360 72795453 -82834667 - L1Md_F3 LINE L1 -649 5935 5843 4 1140 2147 26 11 11 chr4 72795454 72795723 -82834397 + L1Md_F3 LINE L1 6314 6582 -2 4 1140 1606 292 36 69 chr4 72795896 72796458 -82833662 + RMER15 LTR ERVL 27 569 -6 4 1140 213 209 0 0 chr4 72796877 72796944 -82833176 + GA-rich Low_complexity Low_complexity 2 68 0 4 1140 387 338 119 75 chr4 72797315 72797542 -82832578 - MTEa LTR MaLR -122 237 1 4 1140 1329 274 100 5 chr4 72797542 72797708 -82832412 - MTEa-int LTR MaLR -53 1527 1362 4 1140 388 0 19 19 chr4 72797708 72797761 -82832359 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 1140 1329 274 100 5 chr4 72797761 72797951 -82832169 - MTEa-int LTR MaLR -219 1361 1136 4 1140 494 253 0 0 chr4 72797951 72798046 -82832074 + RMER1B Other Other 595 689 -377 4 1140 781 347 52 26 chr4 72798046 72798395 -82831725 - MTEa-int LTR MaLR -1221 359 2 4 1140 446 249 45 17 chr4 72798396 72798529 -82831591 - MTEa LTR MaLR 0 379 242 4 1140 5853 166 50 47 chr4 72798533 72799904 -82830216 + L1_Mur1 LINE L1 2791 4164 -1722 4 1140 4017 146 6 23 chr4 72799898 72800599 -82829521 + L1_Mur1 LINE L1 5014 5702 -184 4 1140 1181 263 24 32 chr4 72800597 72801125 -82828995 + Lx6 LINE L1 6218 6882 -578 4 1140 690 199 124 0 chr4 72801131 72801317 -82828803 - L1_Mur2 LINE L1 -444 5433 5225 4 1140 254 148 56 0 chr4 72801317 72801371 -82828749 - L1_Mur2 LINE L1 -766 5111 5055 4 1140 2311 151 35 14 chr4 72801350 72801877 -82828243 + Lx2A1 LINE L1 5453 5992 -1016 4 1140 2197 135 34 3 chr4 72801877 72802226 -82827894 + Lx2A1 LINE L1 6645 7004 -4 4 1140 617 69 0 11 chr4 72802227 72802315 -82827805 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 4 1140 748 321 80 26 chr4 72802346 72802698 -82827422 + Lx6 LINE L1 7059 7429 -31 4 1140 779 116 16 0 chr4 72802708 72802837 -82827283 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 4 1140 1162 75 0 0 chr4 72803311 72803470 -82826650 + L1_Mus1 LINE L1 6408 6566 -1 4 1140 42 0 0 0 chr4 72803579 72803621 -82826499 + AT_rich Low_complexity Low_complexity 1 42 0 4 1140 385 310 79 34 chr4 72803750 72803927 -82826193 + MLT1B LTR MaLR 92 276 -114 4 1140 25516 147 28 22 chr4 72804712 72810872 -82819248 + L1_Mus3 LINE L1 476 6633 -8 4 1140 28 29 0 0 chr4 72811005 72811040 -82819080 + AT_rich Low_complexity Low_complexity 1 35 0 4 1140 332 344 39 72 chr4 72811073 72811405 -82818715 + L1MD LINE L1 3252 3572 -2574 4 1140 54 41 0 30 chr4 72811605 72811706 -82818414 + AT_rich Low_complexity Low_complexity 1 98 0 4 1140 203 238 32 0 chr4 72811876 72811939 -82818181 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1140 339 304 31 6 chr4 72812239 72812398 -82817722 - L1MC1 LINE L1 -133 6200 6038 4 1140 4544 54 13 20 chr4 72812346 72812952 -82817168 + L1Md_F2 LINE L1 5729 6330 -252 4 1140 1082 312 31 34 chr4 72812955 72813340 -82816780 - Lx7 LINE L1 -874 6822 6439 4 1140 1356 280 59 13 chr4 72813345 72813804 -82816316 + Lx7 LINE L1 6829 7308 -388 4 1140 360 274 11 63 chr4 72813804 72813952 -82816168 + B3 SINE B2 60 192 -3 4 1140 3306 154 30 0 chr4 72814072 72814636 -82815484 + Lx3B LINE L1 6390 6970 -3 4 1140 939 321 58 13 chr4 72814809 72815206 -82814914 - Lx8 LINE L1 -244 7229 6815 4 1140 27 62 0 0 chr4 72816501 72816549 -82813571 + AT_rich Low_complexity Low_complexity 1 48 0 4 1140 1243 285 42 37 chr4 72816881 72817272 -82812848 - ORR1B1-int LTR MaLR -350 1020 643 4 1140 339 254 112 17 chr4 72817299 72817415 -82812705 - ORR1B1 LTR MaLR -91 303 161 4 1140 239 271 0 0 chr4 72818026 72818085 -82812035 + Lx8 LINE L1 7404 7462 -11 4 1140 25 0 0 0 chr4 72818112 72818137 -82811983 + AT_rich Low_complexity Low_complexity 1 25 0 4 1140 1087 110 11 11 chr4 72819097 72819281 -82810839 + L1_Mus3 LINE L1 6449 6632 -6 4 1140 3136 41 5 8 chr4 72820274 72820670 -82809450 + L1Md_F3 LINE L1 6190 6584 0 4 1140 199 318 43 87 chr4 72820772 72820910 -82809210 - MIRc SINE MIR -43 225 94 4 1140 1233 250 156 48 chr4 72821014 72821485 -82808635 + RMER19C LTR ERVK 25 611 0 4 1140 2123 203 23 40 chr4 72821621 72822097 -82808023 + RLTR20D LTR ERVK 1 568 0 4 1140 228 238 117 19 chr4 72822097 72822147 -82807973 + Charlie25 DNA MER1_type 2126 2185 -339 4 1140 699 81 0 9 chr4 72822188 72822289 -82807831 + L1Md_F2 LINE L1 5504 5614 -628 4 1140 7436 66 21 7 chr4 72822290 72823269 -82806851 + L1Md_F2 LINE L1 5587 6579 -3 4 1140 233 257 12 129 chr4 72823269 72823354 -82806766 - RLTR33 LTR ERVK -159 519 445 4 1140 261 57 0 0 chr4 72824666 72824701 -82805419 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1140 567 273 12 60 chr4 72824834 72825023 -82805097 - ORR1C2 LTR MaLR -213 181 9 4 1140 1378 193 80 28 chr4 72825065 72825353 -82804767 + MTC LTR MaLR 1 303 -118 4 1140 494 231 58 25 chr4 72825827 72825947 -82804173 + MTC LTR MaLR 290 413 -8 4 1140 1641 305 40 80 chr4 72825920 72826742 -82803378 - ORR1C2-int LTR MaLR -46 1534 584 4 1140 912 240 65 112 chr4 72826938 72827341 -82802779 - ORR1C2 LTR MaLR 0 384 1 4 1140 342 355 53 35 chr4 72827469 72827604 -82802516 - ORR1D2-int LTR MaLR -928 652 516 4 1140 1179 68 0 0 chr4 72827604 72827751 -82802369 + B1_Mm SINE Alu 1 147 0 4 1140 440 291 18 16 chr4 72827751 72827898 -82802222 - ORR1D2-int LTR MaLR -1065 515 337 4 1140 656 225 16 0 chr4 72827903 72828032 -82802088 - ORR1D2-int LTR MaLR -1216 154 24 4 1140 895 308 135 13 chr4 72828042 72828354 -82801766 - ORR1D2 LTR MaLR -12 358 9 4 1140 232 167 0 0 chr4 72828700 72828748 -82801372 + A-rich Low_complexity Low_complexity 1 48 0 4 1140 304 368 74 23 chr4 72829487 72829662 -82800458 - MLT1I LTR MaLR -125 286 103 4 1140 3299 72 0 0 chr4 72831753 72832227 -82797893 - L1_Mus2 LINE L1 -553 6013 5540 4 1140 4437 64 0 0 chr4 72832227 72832786 -82797334 + L1_Mus2 LINE L1 6006 6564 -2 4 1140 23 33 0 0 chr4 72832791 72832821 -82797299 + AT_rich Low_complexity Low_complexity 1 30 0 4 1140 360 318 77 45 chr4 72833964 72834185 -82795935 + MuRRS4-int LTR ERV1 1159 1386 -3677 4 1140 581 163 0 0 chr4 72834953 72835051 -82795069 + L1_Mur1 LINE L1 5505 5602 -284 4 1140 259 197 0 32 chr4 72835593 72835646 -82794474 + Lx3C LINE L1 6812 6863 -113 4 1140 765 61 0 0 chr4 72835646 72835745 -82794375 + (GAA)n Simple_repeat Simple_repeat 2 100 0 4 1140 984 99 0 0 chr4 72835762 72835904 -82794216 + (GAGAA)n Simple_repeat Simple_repeat 4 145 0 4 1140 1183 62 0 0 chr4 72836219 72836363 -82793757 + B1_Mm SINE Alu 1 144 -3 4 1140 212 0 36 0 chr4 72836363 72836391 -82793729 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1140 2486 241 33 26 chr4 72837039 72837653 -82792467 + RLTR17 LTR ERVK 1 618 -74 4 1140 424 295 42 6 chr4 72838525 72838767 -82791353 + L1_Rod LINE L1 4535 4772 -1371 4 1140 4513 149 20 1 chr4 72838767 72839520 -82790600 + Lx3A LINE L1 6207 6973 -8 4 1140 302 125 36 0 chr4 72839535 72839591 -82790529 + GA-rich Low_complexity Low_complexity 2 59 0 4 1140 445 264 122 15 chr4 72839597 72839859 -82790261 + L1_Rod LINE L1 5210 5499 -348 4 1140 240 281 50 137 chr4 72840085 72840246 -82789874 + ORR1D2 LTR MaLR 223 369 -1 4 1140 616 235 74 10 chr4 72840327 72840529 -82789591 + ORR1D2-int LTR MaLR 50 264 -1106 4 1140 234 145 0 98 chr4 72840538 72840583 -82789537 + Lx9 LINE L1 7386 7427 -217 4 1140 2988 86 5 2 chr4 72840583 72840978 -82789142 + MTA_Mm LTR MaLR 1 396 0 4 1140 7060 91 23 72 chr4 72840978 72842132 -82787988 + MTA_Mm-int LTR MaLR 1 1098 0 4 1140 2967 84 5 2 chr4 72842132 72842527 -82787593 + MTA_Mm LTR MaLR 1 396 0 4 1140 234 145 0 98 chr4 72842527 72842540 -82787580 + Lx9 LINE L1 7428 7438 -206 4 1140 280 247 34 29 chr4 72842621 72842882 -82787238 + (TA)n Simple_repeat Simple_repeat 1 262 0 4 1140 232 172 47 0 chr4 72843619 72843683 -82786437 + A-rich Low_complexity Low_complexity 3 69 0 4 1140 225 333 37 28 chr4 72843893 72844001 -82786119 + MTD LTR MaLR 1 109 -310 4 1140 1644 250 70 34 chr4 72844032 72844620 -82785500 - Lx9 LINE L1 -101 7543 6935 4 1140 919 282 144 8 chr4 72844627 72845010 -82785110 + Lx9 LINE L1 6379 6813 -831 4 1140 3550 166 9 25 chr4 72845018 72845685 -82784435 + L1VL4 LINE L1 20 675 -5627 4 1140 6892 22 1 31 chr4 72845683 72846842 -82783278 + L1Md_A LINE L1 446 1563 -4320 4 1140 1853 109 31 22 chr4 72846842 72847161 -82782959 - RLTRETN_Mm LTR ERVK 0 322 1 4 1140 17238 138 32 22 chr4 72847161 72851095 -82779025 - ETnERV2-int LTR ERVK -198 7208 2798 4 1140 13976 138 22 15 chr4 72851257 72853946 -82776174 - ETnERV2-int LTR ERVK -3575 2592 1 4 1140 1857 109 31 22 chr4 72853946 72854265 -82775855 - RLTRETN_Mm LTR ERVK 0 322 1 4 1140 33148 14 1 0 chr4 72854265 72858292 -82771828 + L1Md_A LINE L1 1558 5586 -297 4 1140 8748 18 0 0 chr4 72858292 72859286 -82770834 + L1Md_A LINE L1 5587 6580 -2 4 1140 1072 86 32 5 chr4 72859295 72859483 -82770637 + L1VL4 LINE L1 665 857 -5445 4 1140 768 67 9 0 chr4 72859486 72859591 -82770529 + B1_Mm SINE Alu 42 147 0 4 1140 6642 156 73 46 chr4 72859621 72859874 -82770246 - RMER16-int LTR ERVK -2292 3114 2884 4 1140 1658 26 5 0 chr4 72859874 72860066 -82770054 + B2_Mm1t SINE B2 1 193 0 4 1140 6642 156 73 46 chr4 72860066 72860220 -82769900 - RMER16-int LTR ERVK -2523 2883 2738 4 1140 438 20 0 0 chr4 72860220 72860271 -82769849 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1140 6642 170 73 50 chr4 72860271 72861564 -82768556 - RMER16-int LTR ERVK -3616 3790 1567 4 1140 3709 181 73 23 chr4 72861580 72862728 -82767392 - RMER16-int LTR ERVK -5231 2175 255 4 1140 350 58 39 0 chr4 72862872 72862924 -82767196 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 4 1140 230 215 44 44 chr4 72863202 72863270 -82766850 - RLTR9A LTR ERVK 0 368 301 4 1140 2972 18 3 0 chr4 72863277 72863613 -82766507 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1140 52983 19 15 5 chr4 72863613 72870001 -82760119 + IAPEz-int LTR ERVK 8 6459 -22 4 1140 417 251 259 25 chr4 72870001 72870023 -82760097 - RLTR9A LTR ERVK -30 338 304 4 1140 2965 18 3 0 chr4 72870023 72870359 -82759761 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1140 417 251 259 25 chr4 72870359 72870610 -82759510 - RLTR9A LTR ERVK -65 303 1 4 1140 2901 163 35 5 chr4 72870610 72871190 -82758930 + L1_Mur2 LINE L1 4277 4873 -1004 4 1140 360 323 77 35 chr4 72871381 72871551 -82758569 + RLTR41 LTR ERV1 270 446 0 4 1140 5532 170 18 25 chr4 72871551 72873330 -82756790 + Lx LINE L1 4876 6654 0 4 1140 430 292 7 7 chr4 72873342 72873490 -82756630 + Lx9 LINE L1 6796 6943 -701 4 1140 4081 73 0 4 chr4 72873576 72874109 -82756011 - L1Md_F2 LINE L1 -1 6581 6051 4 1140 380 240 62 55 chr4 72874235 72874363 -82755757 - LTR41B LTR ERVL -626 132 4 4 1140 4030 68 10 0 chr4 72874522 72875039 -82755081 + L1Md_F2 LINE L1 6061 6582 0 4 1140 203 89 0 62 chr4 72875726 72875774 -82754346 + A-rich Low_complexity Low_complexity 1 45 0 4 142 791 297 59 54 chr4 72876010 72876398 -82753722 - MTE2a LTR MaLR -4 375 3 4 1141 250 294 42 32 chr4 72878174 72878269 -82751851 + MER5A DNA MER1_type 89 184 -5 4 1141 5725 135 40 9 chr4 72879000 72879945 -82750175 - Lx2A1 LINE L1 -11 6997 6024 4 1141 309 259 103 0 chr4 72880480 72880596 -82749524 - L1M5 LINE L1 -681 5498 5371 4 1141 776 324 64 30 chr4 72880602 72880878 -82749242 - Lx9 LINE L1 -280 7364 7088 4 1141 414 0 0 0 chr4 72880878 72880924 -82749196 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1141 776 324 64 30 chr4 72880924 72881257 -82748863 - Lx9 LINE L1 -557 7087 6734 4 1141 21 0 0 0 chr4 72881579 72881600 -82748520 + AT_rich Low_complexity Low_complexity 1 21 0 4 1141 1857 287 71 37 chr4 72881860 72882850 -82747270 - Lx9 LINE L1 -1730 5966 4900 4 1141 396 0 0 0 chr4 72882850 72882894 -82747226 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1141 216 0 0 0 chr4 72882894 72882917 -82747203 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1141 1857 286 75 39 chr4 72882917 72883096 -82747024 - Lx9 LINE L1 -948 4899 4725 4 1141 678 296 56 33 chr4 72883104 72883497 -82746623 + L1M2 LINE L1 4247 4658 -1485 4 1141 333 0 0 0 chr4 72883497 72883534 -82746586 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1141 678 296 56 33 chr4 72883534 72883660 -82746460 + L1M2 LINE L1 4659 4778 -1365 4 1141 23 0 0 0 chr4 72883864 72883887 -82746233 + AT_rich Low_complexity Low_complexity 1 23 0 4 1141 212 86 29 0 chr4 72883996 72884031 -82746089 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1141 21 0 0 0 chr4 72884102 72884123 -82745997 + AT_rich Low_complexity Low_complexity 1 21 0 5 1141 308 225 116 0 chr4 72885112 72885250 -82744870 + Lx9 LINE L1 7461 7614 -30 5 1141 345 351 12 24 chr4 72885342 72885362 -82744758 - MT2A LTR ERVL -366 167 1 5 1141 440 324 20 27 chr4 72885362 72885511 -82744609 - MTEa LTR MaLR -231 148 1 5 1141 2390 34 0 0 chr4 72886357 72886651 -82743469 + L1Md_F2 LINE L1 5293 5586 -297 5 1141 8085 46 5 1 chr4 72886651 72887643 -82742477 + L1Md_F2 LINE L1 5587 6582 0 5 1141 1939 83 4 4 chr4 72887652 72887929 -82742191 - L1Md_F2 LINE L1 -196 6386 6110 5 1141 898 111 78 0 chr4 72887929 72888082 -82742038 + L1_Mus1 LINE L1 6403 6567 0 5 1141 216 0 0 0 chr4 72888519 72888543 -82741577 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1141 22 80 0 0 chr4 72888852 72888902 -82741218 + AT_rich Low_complexity Low_complexity 1 50 0 5 1141 345 318 61 75 chr4 72888904 72889118 -82741002 - B3 SINE B2 0 216 6 5 1141 3304 141 34 2 chr4 72889164 72889692 -82740428 - Lx4A LINE L1 -1 7057 6513 5 1141 3373 51 0 0 chr4 72889691 72890106 -82740014 + L1Md_F2 LINE L1 6151 6565 -17 5 1141 5095 142 33 13 chr4 72890139 72891197 -82738923 - Lx4A LINE L1 -529 6529 5442 5 1141 414 0 0 0 chr4 72891197 72891243 -82738877 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1141 3873 36 15 0 chr4 72891248 72891725 -82738395 - L1Md_F3 LINE L1 -2 6582 6099 5 1141 4813 127 28 14 chr4 72891725 72892110 -82738010 - Lx4A LINE L1 -441 5436 5038 5 1141 2030 238 30 17 chr4 72892102 72892645 -82737475 + Lx9 LINE L1 7094 7643 -1 5 1141 1569 154 21 28 chr4 72893028 72893316 -82736804 - Lx LINE L1 -2 6652 6367 5 1141 2232 99 3 6 chr4 72893321 72893645 -82736475 - Lx LINE L1 -605 6049 5727 5 1141 431 277 41 149 chr4 72893665 72894083 -82736037 - L1_Mur3 LINE L1 -2408 3735 3333 5 1141 593 49 12 0 chr4 72894108 72894189 -82735931 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 5 1141 1094 76 0 0 chr4 72894189 72894324 -82735796 - B1_Mus2 SINE Alu -11 136 2 5 1141 39256 32 1 6 chr4 72894372 72900565 -82729555 - L1Md_T LINE L1 0 6582 423 5 1141 951 277 86 64 chr4 72900567 72901157 -82728963 - L1_Mur3 LINE L1 -3602 2278 1656 5 1141 2852 159 48 24 chr4 72901157 72901699 -82728421 + RLTR31B_Mm LTR ERVK 1 555 -2 5 1141 951 277 86 64 chr4 72901699 72901766 -82728354 - L1_Mur3 LINE L1 -4225 1655 1595 5 1141 249 57 0 0 chr4 72901766 72901801 -82728319 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1141 951 277 86 64 chr4 72901801 72902001 -82728119 - L1_Mur3 LINE L1 -4286 1594 1401 5 1141 2735 188 40 45 chr4 72903004 72903605 -82726515 - RMER13B LTR ERVK -310 598 1 5 1141 1125 75 7 0 chr4 72904157 72904304 -82725816 + B1_Mus1 SINE Alu 1 148 0 5 1141 249 33 0 0 chr4 72904305 72904335 -82725785 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1141 360 207 68 17 chr4 72904361 72904479 -82725641 - L1M3 LINE L1 -1713 4427 4304 5 1141 7761 56 2 1 chr4 72904580 72905867 -82724253 - L1Md_F2 LINE L1 -1 6581 5294 5 1141 11375 50 0 5 chr4 72905862 72906877 -82723243 + L1_Mm LINE L1 3857 4871 -1012 5 1141 5173 64 0 6 chr4 72906877 72907549 -82722571 - L1Md_F2 LINE L1 -1 6581 5914 5 1141 11375 50 0 5 chr4 72907549 72907972 -82722148 + L1_Mm LINE L1 4872 5288 -595 5 1141 1229 134 50 0 chr4 72907989 72908190 -82721930 - Lx3_Mus LINE L1 -8 7001 6791 5 1141 427 323 124 33 chr4 72909008 72909338 -82720782 + MLT1B LTR MaLR 1 360 -30 5 1141 846 328 29 62 chr4 72909674 72910015 -82720105 + MTEb LTR MaLR 1 330 -49 5 1141 1185 329 77 19 chr4 72910104 72910640 -82719480 + MTE-int LTR MaLR 15 581 -999 5 1141 3261 235 145 42 chr4 72910641 72911568 -82718552 - RMER1B Other Other 0 1066 45 5 1141 284 231 0 0 chr4 72911635 72911700 -82718420 + MTE-int LTR MaLR 647 711 -869 5 1141 1875 88 32 11 chr4 72911757 72912034 -82718086 + L1_Mus2 LINE L1 5801 6083 -483 5 1141 719 92 0 0 chr4 72912034 72912143 -82717977 + L1_Mus2 LINE L1 6456 6564 -2 5 1141 641 299 37 28 chr4 72912336 72912553 -82717567 + Lx8 LINE L1 6819 7037 -436 5 1141 599 280 69 50 chr4 72912951 72913271 -82716849 + RLTR15 LTR ERVK 1 326 -33 5 1141 4526 49 10 19 chr4 72914000 72914584 -82715536 - L1Md_F2 LINE L1 0 6582 6004 5 1141 252 59 0 0 chr4 72914725 72914759 -82715361 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1141 702 96 0 0 chr4 72915071 72915175 -82714945 + (GA)n Simple_repeat Simple_repeat 2 105 0 5 1141 235 336 80 33 chr4 72915686 72915837 -82714283 + L1_Mur3 LINE L1 573 730 -6998 5 1141 396 257 9 9 chr4 72916244 72916350 -82713770 + L1_Mur3 LINE L1 849 954 -6774 5 1141 1836 196 62 14 chr4 72916375 72916495 -82713625 + ORR1B1 LTR MaLR 1 120 -274 5 1141 396 0 0 0 chr4 72916495 72916539 -82713581 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1141 1836 196 62 14 chr4 72916539 72916786 -82713334 + ORR1B1 LTR MaLR 121 385 -9 5 1141 2641 155 18 5 chr4 72916837 72917284 -82712836 + Lx2 LINE L1 6545 6997 0 5 1141 645 14 0 0 chr4 72917294 72917368 -82712752 + (GAA)n Simple_repeat Simple_repeat 2 75 0 5 1141 355 237 113 5 chr4 72917576 72917771 -82712349 + L1_Mur3 LINE L1 1211 1426 -4454 5 1141 24771 64 6 1 chr4 72917767 72921103 -82709017 - L1Md_F3 LINE L1 -618 5966 2612 5 1141 4955 41 8 7 chr4 72921103 72921714 -82708406 + L1Md_F3 LINE L1 5972 6583 -1 5 1141 233 120 0 39 chr4 72921714 72921766 -82708354 + L1_Mur3 LINE L1 1411 1460 -4417 5 1141 262 182 0 0 chr4 72921768 72921812 -82708308 - ORR1A4 LTR MaLR 0 329 286 5 1141 5906 171 10 32 chr4 72921806 72922952 -82707168 - ORR1A4-int LTR MaLR -720 1243 124 5 1141 922 211 33 110 chr4 72922948 72923193 -82706927 - ORR1A4 LTR MaLR -103 226 1 5 1141 1624 248 185 15 chr4 72923193 72924048 -82706072 + L1_Mur3 LINE L1 1461 2460 -3420 5 1141 1587 52 9 0 chr4 72924050 72924375 -82705745 + (GGAGAA)n Simple_repeat Simple_repeat 1 327 0 5 1141 3321 48 0 128 chr4 72924378 72924878 -82705242 - RLTR10C LTR ERVK 0 436 1 5 1141 7450 49 0 53 chr4 72924878 72925866 -82704254 - MMERVK10C-int LTR ERVK 0 7581 6646 5 1141 41338 44 0 1 chr4 72925859 72930796 -82699324 - MMERVK10C-int LTR ERVK -1778 5803 870 5 1141 2643 92 53 3 chr4 72930794 72931174 -82698946 - MMERVK10C-int LTR ERVK -7182 399 1 5 1141 3380 41 0 128 chr4 72931174 72931673 -82698447 - RLTR10C LTR ERVK 0 436 2 5 1141 852 79 0 0 chr4 72931673 72931799 -82698321 + (GGAGAA)n Simple_repeat Simple_repeat 3 128 0 5 1141 2268 296 85 127 chr4 72931846 72932315 -82697805 + L1_Mur3 LINE L1 2513 2987 -2896 5 1141 495 73 0 0 chr4 72932315 72932383 -82697737 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1141 6848 282 83 122 chr4 72932383 72932814 -82697306 + L1_Mur3 LINE L1 2988 3324 -2559 5 1141 1285 93 16 16 chr4 72932814 72933000 -82697120 + B2_Mm2 SINE B2 3 188 -7 5 1141 6848 222 78 100 chr4 72933000 72933431 -82696689 + L1_Mur3 LINE L1 3313 3754 -2126 5 1141 977 64 49 28 chr4 72933431 72933575 -82696545 + B1_Mus1 SINE Alu 2 148 0 5 1141 6848 222 78 100 chr4 72933575 72935719 -82694401 + L1_Mur3 LINE L1 3755 5839 -41 5 1141 21 57 0 0 chr4 72935743 72935778 -82694342 + AT_rich Low_complexity Low_complexity 1 35 0 5 1141 2648 286 87 8 chr4 72935788 72936661 -82693459 + Lx7 LINE L1 6476 7417 -279 5 1141 408 20 0 0 chr4 72936666 72936715 -82693405 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1141 357 332 102 37 chr4 72937843 72938059 -82692061 - RLTR18 LTR ERVK -5 507 278 5 1141 1503 254 57 28 chr4 72938069 72938526 -82691594 - RLTR11A2 LTR ERVK -2 525 56 5 1141 210 114 22 22 chr4 72938528 72938573 -82691547 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 5 1141 262 231 0 0 chr4 72938573 72938625 -82691495 - RLTR11A2 LTR ERVK -400 53 2 5 1141 526 299 61 115 chr4 72938728 72939023 -82691097 - RLTR18 LTR ERVK -209 303 25 5 1141 1412 278 52 8 chr4 72940812 72941200 -82688920 - MTD LTR MaLR -14 405 1 5 1141 745 340 70 26 chr4 72942128 72942469 -82687651 + MTD LTR MaLR 57 412 -7 5 1141 263 346 0 0 chr4 72942484 72942562 -82687558 - Lx8 LINE L1 -1096 6377 6300 5 1141 21 36 0 0 chr4 72943424 72943452 -82686668 + AT_rich Low_complexity Low_complexity 1 28 0 5 1141 222 195 0 0 chr4 72943813 72943854 -82686266 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1141 233 236 0 0 chr4 72943891 72943963 -82686157 - Lx8 LINE L1 -82 5765 5694 5 1141 1108 254 45 51 chr4 72943963 72944343 -82685777 + MTD LTR MaLR 1 419 0 5 1141 1472 265 129 49 chr4 72944346 72944988 -82685132 + MTD-int LTR MaLR 5 697 -561 5 1141 1167 252 7 14 chr4 72945300 72945578 -82684542 + Lx9 LINE L1 6517 6792 -852 5 1141 239 267 92 37 chr4 72945853 72945962 -82684158 - Lx7 LINE L1 -400 7296 7182 5 1141 462 306 75 33 chr4 72946025 72946238 -82683882 - Lx6 LINE L1 -176 7284 7063 5 1141 2192 156 0 45 chr4 72946262 72946658 -82683462 - Lx LINE L1 -9 6645 6268 5 1141 1486 179 3 0 chr4 72946658 72946949 -82683171 + L1_Mur2 LINE L1 5083 5374 -503 5 1141 2742 116 7 0 chr4 72946947 72947385 -82682735 + L1_Mus4 LINE L1 5607 6047 -589 5 1141 2176 233 31 31 chr4 72947396 72947973 -82682147 - Lx6 LINE L1 -426 7034 6458 5 1141 186 133 0 0 chr4 72948054 72948084 -82682036 + (CATA)n Simple_repeat Simple_repeat 1 30 0 5 1141 216 67 0 0 chr4 72948185 72948215 -82681905 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 5 1141 420 20 0 0 chr4 72948277 72948326 -82681794 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 5 1141 331 234 53 23 chr4 72948326 72948457 -82681663 - Lx6 LINE L1 -18 7442 7308 5 1141 1996 139 56 35 chr4 72948752 72949125 -82680995 - Lx LINE L1 -6 6648 6268 5 1141 1001 147 125 0 chr4 72949140 72949324 -82680796 + Lx LINE L1 6041 6247 -407 5 1141 632 293 24 33 chr4 72949327 72949662 -82680458 - L1_Mur3 LINE L1 -4009 1871 1540 5 1141 704 311 62 12 chr4 72949720 72950045 -82680075 + Lx9 LINE L1 6660 7000 -644 5 1141 1415 183 179 24 chr4 72950075 72950456 -82679664 - RMER1C Other Other -18 1324 885 5 1141 614 252 76 5 chr4 72950458 72950608 -82679512 + B3 SINE B2 18 172 -44 5 1141 321 366 55 6 chr4 72950742 72950907 -82679213 + Lx8 LINE L1 7047 7219 -254 5 1141 22 35 0 0 chr4 72951258 72951287 -82678833 + AT_rich Low_complexity Low_complexity 1 29 0 5 1141 975 282 70 4 chr4 72951850 72952188 -82677932 + ORR1D-int LTR MaLR 4 387 -1193 5 1141 251 286 161 93 chr4 72952902 72953095 -82677025 + RMER2 LTR ERV1 320 525 -42 5 1141 720 309 91 38 chr4 72954023 72954247 -82675873 - L1MD LINE L1 -1218 4928 4716 5 1141 636 22 33 0 chr4 72954247 72954337 -82675783 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 5 1141 720 309 91 38 chr4 72954337 72954681 -82675439 - L1MD LINE L1 -1431 4715 4330 5 1141 432 0 0 0 chr4 72954681 72954729 -82675391 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1141 720 309 91 38 chr4 72954729 72955334 -82674786 - L1MD LINE L1 -1817 4329 3693 5 1141 2055 214 6 20 chr4 72955561 72956571 -82673549 + L1Md_F LINE L1 2 596 -5923 5 1141 34773 62 1 24 chr4 72956585 72962473 -82667647 + L1Md_T LINE L1 99 5586 -297 5 1141 8005 58 0 0 chr4 72962473 72963522 -82666598 + L1Md_T LINE L1 5587 6582 0 5 1141 1116 72 0 0 chr4 72963532 72963670 -82666450 + B1_Mm SINE Alu 1 138 -9 5 1141 1002 99 12 6 chr4 72963694 72963857 -82666263 + (GGAA)n Simple_repeat Simple_repeat 3 166 0 5 1141 525 289 91 2 chr4 72963859 72964031 -82666089 + ORR1D1 LTR MaLR 25 210 -160 5 1141 242 301 40 52 chr4 72964052 72964304 -82665816 - L1MD LINE L1 -2169 3977 3729 5 1141 648 286 17 0 chr4 72965119 72965297 -82664823 + B3A SINE B2 1 181 -17 5 1141 612 43 53 0 chr4 72967597 72967691 -82662429 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 5 1141 2824 185 18 5 chr4 72968016 72968618 -82661502 + L1_Mur2 LINE L1 5179 5788 -89 5 1141 34266 49 9 5 chr4 72968621 72973892 -82656228 + L1Md_T LINE L1 331 5586 -297 5 1141 8309 41 0 0 chr4 72973892 72974887 -82655233 + L1Md_T LINE L1 5587 6581 -1 5 1141 26 0 0 0 chr4 72974932 72974958 -82655162 + AT_rich Low_complexity Low_complexity 1 26 0 5 1141 2547 218 24 3 chr4 72974958 72975590 -82654530 + Lx4B LINE L1 5783 6427 -631 6 1141 492 18 0 0 chr4 72975711 72975768 -82654352 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1141 483 126 138 0 chr4 72975940 72976027 -82654093 - MusHAL1 LINE L1 -1652 1060 962 6 1141 1080 150 6 0 chr4 72976600 72976773 -82653347 + L1VL4 LINE L1 244 417 -5885 6 1141 2644 208 56 16 chr4 72976789 72977341 -82652779 + RLTR17 LTR ERVK 98 671 -21 6 1141 260 27 27 0 chr4 72977365 72977402 -82652718 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1141 406 171 38 9 chr4 72977409 72977515 -82652605 - Lx3_Mus LINE L1 -8 7001 6893 6 1141 16845 174 25 8 chr4 72977515 72981904 -82648216 + Lx2 LINE L1 2176 6643 -354 6 1141 1243 171 5 5 chr4 72981904 72982122 -82647998 + Lx2 LINE L1 6775 6992 -5 6 1141 213 65 0 0 chr4 72982851 72982882 -82647238 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 6 1141 1969 97 17 0 chr4 72982995 72983284 -82646836 + MTB LTR MaLR 107 400 0 6 1141 3847 152 80 7 chr4 72983293 72983995 -82646125 + Lx3A LINE L1 6222 6974 -7 6 1141 26 0 0 0 chr4 72984000 72984026 -82646094 + AT_rich Low_complexity Low_complexity 1 26 0 6 1141 2460 255 32 9 chr4 72984026 72985298 -82644822 + Lx6 LINE L1 5329 6863 -597 6 1141 640 291 132 12 chr4 72985314 72985744 -82644376 + Lx6 LINE L1 6951 7432 -28 6 1141 598 271 49 38 chr4 72985773 72986118 -82644002 + L1_Rod LINE L1 2500 2848 -2999 6 1141 5163 51 0 0 chr4 72986114 72986799 -82643321 - L1Md_F3 LINE L1 -1506 4377 3693 6 1141 8752 67 0 0 chr4 72986796 72987972 -82642148 + L1Md_F3 LINE L1 4410 5585 -298 6 1141 8104 45 2 1 chr4 72987973 72988968 -82641152 + L1Md_F3 LINE L1 5587 6582 -2 6 1141 777 271 40 93 chr4 72988974 72988994 -82641126 + L1_Rod LINE L1 2843 2860 -2987 6 1141 3772 58 19 0 chr4 72988994 72989460 -82640660 + MT2C_Mm LTR ERVL 1 475 0 6 1141 777 271 40 93 chr4 72989460 72990071 -82640049 + L1_Rod LINE L1 2861 3440 -2407 6 1141 2015 184 5 80 chr4 72990073 72990485 -82639635 + ORR1B1 LTR MaLR 3 383 -11 6 1141 1087 229 167 98 chr4 72990485 72991324 -82638796 - RMER17B LTR ERVK 0 958 3 6 1141 6973 151 24 24 chr4 72991382 72993367 -82636753 + L1VL4 LINE L1 217 2197 -1362 6 1141 686 184 63 6 chr4 72993365 72993524 -82636596 + L1_Mm LINE L1 5313 5480 -403 6 1141 591 51 0 0 chr4 72993656 72993735 -82636385 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1141 1840 327 39 19 chr4 72993784 72994650 -82635470 + Lx8 LINE L1 6248 7131 -342 6 1141 1264 133 59 18 chr4 72995033 72995255 -82634865 + Lx3C LINE L1 6745 6975 -1 6 1141 204 163 0 23 chr4 72995317 72995361 -82634759 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 6 1141 669 230 18 12 chr4 72995361 72995528 -82634592 + Lx7 LINE L1 7527 7694 -2 6 1141 531 0 0 0 chr4 72995724 72995783 -82634337 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1141 2083 186 45 5 chr4 72996803 72997224 -82632896 - Lx LINE L1 -6 6648 6211 6 1141 2807 212 25 24 chr4 72997230 72997869 -82632251 - RMER1B Other Other -11 1055 416 6 1141 915 258 45 25 chr4 72997863 72998177 -82631943 - Lx7 LINE L1 -1448 6248 5929 6 1141 10237 72 3 1 chr4 72998294 72999715 -82630405 + L1_Mm LINE L1 4449 5872 -11 6 1141 1592 226 84 0 chr4 73000000 73000359 -82629761 - ORR1B1 LTR MaLR -5 389 1 1 1141 693 109 32 40 chr4 73000364 73000487 -82629633 - ORR1B1-int LTR MaLR -5 1504 1383 1 1141 467 129 0 0 chr4 73000487 73000557 -82629563 - RMER6C LTR ERVK 0 690 621 2 1141 1012 203 43 8 chr4 73000588 73000632 -82629488 - Lx5 LINE L1 -1218 5832 5781 3 1141 4842 181 10 12 chr4 73000632 73001520 -82628600 - Lx LINE L1 -2 6652 5767 4 1141 6521 63 1 2 chr4 73001513 73002350 -82627770 + L1Md_F2 LINE L1 5746 6581 -1 5 1141 2578 146 37 2 chr4 73002350 73002783 -82627337 - Lx5 LINE L1 -1270 5780 5331 3 1141 3035 177 11 2 chr4 73002778 73003351 -82626769 + Lx5 LINE L1 4738 5315 -562 3 1141 1414 250 39 70 chr4 73003355 73003897 -82626223 - RMER6C LTR ERVK -54 636 112 2 1141 4861 228 62 33 chr4 73003935 73005194 -82624926 - ORR1B1-int LTR MaLR -118 1391 96 1 1141 369 169 0 0 chr4 73005194 73005271 -82624849 + MusHAL1 LINE L1 1872 1948 -764 6 1141 2241 153 22 27 chr4 73005284 73005693 -82624427 + RLTR26 LTR ERVK 1 407 -235 7 1141 271 0 51 0 chr4 73006265 73006304 -82623816 + (TTG)n Simple_repeat Simple_repeat 2 42 0 8 1141 1096 96 0 0 chr4 73006318 73006464 -82623656 - B1_Mus1 SINE Alu -1 147 2 9 1141 414 0 0 0 chr4 73006482 73006528 -82623592 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1141 242 284 45 0 chr4 73006528 73006595 -82623525 - MTEa LTR MaLR -22 357 288 1 1142 520 223 0 10 chr4 73007277 73007381 -82622739 - PB1D9 SINE Alu -8 112 10 1 1142 1161 61 0 26 chr4 73008472 73008610 -82621510 + B1_Mm SINE Alu 1 138 -9 1 1142 279 0 0 0 chr4 73008610 73008641 -82621479 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1142 1161 61 0 26 chr4 73008641 73008653 -82621467 + B1_Mm SINE Alu 139 147 0 1 1142 373 279 116 0 chr4 73008732 73008861 -82621259 - MER58B DNA MER1_type -22 319 176 1 1142 536 0 16 0 chr4 73009143 73009207 -82620913 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1142 314 326 0 64 chr4 73009968 73010109 -82620011 - Charlie4a DNA MER1_type -19 489 358 1 1142 1017 310 38 12 chr4 73010418 73010764 -82619356 - Lx7 LINE L1 -910 6786 6432 1 1142 1518 206 14 23 chr4 73010965 73011003 -82619117 - Lx2 LINE L1 -1 6996 6964 1 1142 2990 32 0 0 chr4 73011003 73011349 -82618771 - ORR1A0 LTR MaLR 0 346 1 2 1142 1518 206 14 23 chr4 73011349 73011663 -82618457 - Lx2 LINE L1 -34 6963 6647 1 1142 1514 84 261 0 chr4 73011663 73011912 -82618208 + Lx2B LINE L1 6319 6632 -368 2 1142 417 305 75 29 chr4 73011912 73012152 -82617968 - L1M2 LINE L1 -2694 3449 3199 2 1142 1046 306 94 10 chr4 73012262 73013107 -82617013 + L1M2 LINE L1 4539 5418 -462 2 1142 28 29 0 0 chr4 73013326 73013361 -82616759 + AT_rich Low_complexity Low_complexity 1 35 0 2 1142 1628 198 36 62 chr4 73013361 73013749 -82616371 + ORR1C1 LTR MaLR 1 378 0 2 1142 486 310 85 89 chr4 73014079 73014586 -82615534 - RLTR11A2 LTR ERVK -16 511 7 2 1142 221 57 29 0 chr4 73014590 73014625 -82615495 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 2 1142 786 295 15 5 chr4 73015134 73015335 -82614785 - B3 SINE B2 -5 211 9 2 1142 740 156 69 14 chr4 73016020 73016116 -82614004 + L1_Mur2 LINE L1 4536 4655 -1491 2 1142 186 43 0 0 chr4 73016116 73016139 -82613981 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1142 740 140 76 14 chr4 73016139 73016197 -82613923 + L1_Mur2 LINE L1 4622 4688 -1189 2 1142 194 0 39 0 chr4 73016758 73016784 -82613336 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1142 1443 163 33 26 chr4 73017656 73017730 -82612390 + MusHAL1 LINE L1 2128 2198 -514 3 1142 2090 101 0 58 chr4 73017730 73018076 -82612044 - L1Md_F2 LINE L1 -3 6579 6254 3 1142 6386 66 0 1 chr4 73018076 73018909 -82611211 + L1_Mm LINE L1 3402 4233 -1650 3 1142 250 303 49 29 chr4 73019280 73019382 -82610738 + MLT1I LTR MaLR 307 410 -1 3 1142 1138 275 106 64 chr4 73019558 73020105 -82610015 + Lx8 LINE L1 6899 7468 -5 3 1142 42 0 0 0 chr4 73021048 73021090 -82609030 + AT_rich Low_complexity Low_complexity 1 42 0 3 1142 291 228 130 30 chr4 73021090 73021221 -82608899 - Lx9 LINE L1 -64 7580 7437 3 1142 422 290 35 29 chr4 73021221 73021288 -82608832 - Lx9 LINE L1 -136 7508 7441 3 1142 354 23 0 0 chr4 73021288 73021331 -82608789 + (CATA)n Simple_repeat Simple_repeat 1 43 0 4 1142 422 290 35 29 chr4 73021331 73021437 -82608683 - Lx9 LINE L1 -204 7440 7334 3 1142 23 33 0 0 chr4 73021889 73021919 -82608201 + AT_rich Low_complexity Low_complexity 1 30 0 4 1142 7317 36 1 1 chr4 73022382 73023260 -82606860 - L1Md_A LINE L1 0 6582 5705 4 1142 228 183 46 77 chr4 73023263 73023328 -82606792 - RMER20A LTR ERVK -268 248 186 4 1142 6749 18 0 0 chr4 73023328 73024104 -82606016 + L1_Mm LINE L1 4933 5708 -175 4 1142 256 354 0 0 chr4 73025538 73025637 -82604483 + B1_Mur4 SINE Alu 50 148 -2 4 1142 23 92 0 0 chr4 73025766 73025831 -82604289 + AT_rich Low_complexity Low_complexity 1 65 0 4 1142 234 150 0 0 chr4 73025834 73025874 -82604246 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1142 2073 60 0 32 chr4 73025940 73026217 -82603903 + L1_Mus1 LINE L1 6296 6563 -4 4 1142 469 179 8 17 chr4 73026275 73026338 -82603782 + polypyrimidine Low_complexity Low_complexity 58 120 0 4 1142 1240 68 11 0 chr4 73026338 73026514 -82603606 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1142 469 179 8 17 chr4 73026514 73026533 -82603587 + polypyrimidine Low_complexity Low_complexity 39 57 0 5 1142 207 88 0 0 chr4 73026533 73026567 -82603553 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 5 1142 972 129 11 11 chr4 73026567 73026746 -82603374 + CT-rich Low_complexity Low_complexity 1 180 0 5 1142 469 179 8 17 chr4 73026746 73026780 -82603340 + polypyrimidine Low_complexity Low_complexity 5 38 0 5 1142 739 292 131 39 chr4 73026819 73027125 -82602995 + ORR1D2 LTR MaLR 37 370 0 5 1142 183 42 0 0 chr4 73027146 73027170 -82602950 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1142 318 167 0 0 chr4 73028640 73028700 -82601420 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1142 21 0 0 0 chr4 73028707 73028728 -82601392 + AT_rich Low_complexity Low_complexity 1 21 0 5 1142 282 267 11 32 chr4 73028963 73029056 -82601064 + (TATG)n Simple_repeat Simple_repeat 1 91 0 5 1142 892 308 27 16 chr4 73029073 73029507 -82600613 + L1_Rod LINE L1 3621 4029 -2114 6 1142 26 0 0 0 chr4 73030122 73030148 -82599972 + AT_rich Low_complexity Low_complexity 1 26 0 6 1142 3699 185 36 7 chr4 73030480 73031170 -82598950 - Lx4B LINE L1 -63 6995 6286 6 1142 880 298 0 12 chr4 73031172 73031417 -82598703 + ORR1D2-int LTR MaLR 277 518 -852 6 1142 1126 304 42 31 chr4 73031425 73031782 -82598338 + ORR1D2-int LTR MaLR 1167 1527 -53 6 1142 797 336 97 33 chr4 73031782 73032081 -82598039 + ORR1D2 LTR MaLR 1 318 -52 6 1142 1128 114 6 17 chr4 73032104 73032282 -82597838 - Lx4A LINE L1 -1244 5814 5639 6 1142 6139 187 19 4 chr4 73032288 73033422 -82596698 + Lx4A LINE L1 5881 7030 -28 6 1142 28 61 0 0 chr4 73033426 73033475 -82596645 + AT_rich Low_complexity Low_complexity 1 49 0 6 1142 306 220 0 0 chr4 73033635 73033694 -82596426 + MTB_Mm LTR MaLR 1 59 -348 6 1142 549 313 96 39 chr4 73033706 73033862 -82596258 + B3A SINE B2 38 202 -14 6 1142 2484 75 3 0 chr4 73034014 73034335 -82595785 - L1_Mus1 LINE L1 0 6567 6246 6 1142 5118 72 0 24 chr4 73036471 73037196 -82592924 + L1Md_F2 LINE L1 5879 6582 0 7 1142 5118 72 0 24 chr4 73037196 73037209 -82592911 + L1Md_F2 LINE L1 6561 6570 -12 7 1142 294 95 0 0 chr4 73037646 73037688 -82592432 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1142 180 0 0 0 chr4 73038650 73038670 -82591450 + (TA)n Simple_repeat Simple_repeat 1 20 0 7 1142 999 110 7 0 chr4 73038694 73038840 -82591280 + B1_Mus1 SINE Alu 2 148 0 7 1142 30 0 0 0 chr4 73038840 73038870 -82591250 + AT_rich Low_complexity Low_complexity 1 30 0 7 1142 337 350 61 33 chr4 73039275 73039488 -82590632 - L1MEg LINE L1 -5284 800 582 7 1142 4792 234 52 72 chr4 73039898 73039946 -82590174 - Lx7 LINE L1 -203 7493 7434 7 1142 467 82 0 14 chr4 73039946 73040020 -82590100 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1142 4792 234 52 72 chr4 73040020 73040130 -82589990 - Lx7 LINE L1 -263 7433 7337 7 1142 914 110 0 14 chr4 73040130 73040277 -82589843 + (GGAAA)n Simple_repeat Simple_repeat 5 149 0 7 1142 4792 234 52 72 chr4 73040277 73041458 -82588662 - Lx7 LINE L1 -360 7336 6180 7 1142 1527 211 108 35 chr4 73041458 73042183 -82587937 - RMER6C LTR ERVK 0 690 43 7 1142 2663 194 9 6 chr4 73042191 73042724 -82587396 - RMER6-int LTR ERVK -120 3057 2523 7 1142 2876 184 38 67 chr4 73042726 73042857 -82587263 - RMER6-int LTR ERVK -2543 634 546 7 1142 1015 166 49 0 chr4 73042857 73043062 -82587058 - Lx3B LINE L1 -2 6971 6757 8 1142 2876 184 38 67 chr4 73043062 73043583 -82586537 - RMER6-int LTR ERVK -2632 545 1 7 1142 2542 188 6 10 chr4 73043599 73044083 -82586037 + RMER6-int LTR ERVK 638 1119 -2058 8 1142 1032 176 21 5 chr4 73044221 73044409 -82585711 + RMER6C LTR ERVK 500 690 0 8 1142 1009 260 148 14 chr4 73044409 73044842 -82585278 - Lx7 LINE L1 -1511 6185 5695 7 1142 452 320 40 10 chr4 73045142 73045344 -82584776 + Lx7 LINE L1 5799 6006 -1690 8 1142 4931 242 48 18 chr4 73045460 73046695 -82583425 - MERVL_2A-int LTR ERVL -154 5607 4336 8 1142 3046 74 2 107 chr4 73048377 73048864 -82581256 - RLTR10C LTR ERVK 0 436 1 8 1142 4431 93 16 2 chr4 73048864 73049814 -82580306 - MMERVK10C-int LTR ERVK 0 7680 6685 8 1142 340 102 0 0 chr4 73049848 73049897 -82580223 - MMERVK10C-int LTR ERVK -887 6694 6646 8 1142 40313 56 0 2 chr4 73049883 73054835 -82575285 - MMERVK10C-int LTR ERVK -1771 5810 870 8 1142 2795 103 23 3 chr4 73054833 73055224 -82574896 - MMERVK10C-int LTR ERVK -7182 399 1 8 1142 3235 71 30 7 chr4 73055224 73055650 -82574470 - RLTR10C LTR ERVK 0 436 1 8 1142 29687 106 13 6 chr4 73055901 73057869 -82572251 + L1Md_F2 LINE L1 217 2419 -3464 8 1142 474 18 0 0 chr4 73057869 73057924 -82572196 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1142 29687 84 5 2 chr4 73057924 73061078 -82569042 + L1Md_F2 LINE L1 2420 5585 -298 8 1142 7189 77 25 4 chr4 73061078 73062054 -82568066 + L1Md_F2 LINE L1 5587 6582 0 8 1142 359 321 14 74 chr4 73063456 73063604 -82566516 - B1_Mur4 SINE Alu -6 144 6 8 1142 230 167 34 85 chr4 73063672 73063731 -82566389 - MT2B2 LTR ERVL -528 56 1 8 1142 245 202 70 81 chr4 73066211 73066297 -82563823 + PB1D10 SINE Alu 21 105 -12 8 1142 267 277 15 105 chr4 73066352 73066485 -82563635 - B1_Mur4 SINE Alu -6 144 24 9 1142 912 216 10 15 chr4 73066529 73066731 -82563389 + ORR1A4 LTR MaLR 129 329 0 9 1142 3306 227 69 52 chr4 73066731 73067482 -82562638 + ORR1A4-int LTR MaLR 1 770 -1022 9 1142 2913 229 14 15 chr4 73067482 73068218 -82561902 - RMER19A LTR ERVK -2 735 1 9 1142 3306 227 69 52 chr4 73068218 73068522 -82561598 + ORR1A4-int LTR MaLR 771 1074 -718 9 1142 322 153 0 51 chr4 73068554 73068671 -82561449 + T-rich Low_complexity Low_complexity 1 111 0 9 1142 1060 70 0 14 chr4 73068671 73068815 -82561305 - B1_Mus2 SINE Alu 0 147 6 9 1142 293 262 33 26 chr4 73068708 73068861 -82561259 - ORR1B1-int LTR MaLR -750 759 606 9 1142 563 223 35 5 chr4 73068900 73069105 -82561015 - Lx4B LINE L1 -61 6997 6671 9 1142 2268 271 37 43 chr4 73069105 73069893 -82560227 + ORR1A4-int LTR MaLR 1181 1963 0 9 1142 263 127 33 44 chr4 73070213 73070304 -82559816 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 9 1142 1055 114 0 0 chr4 73070306 73070446 -82559674 + B1_Mus1 SINE Alu 2 141 -7 9 1142 198 0 0 0 chr4 73070451 73070473 -82559647 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1142 189 0 0 0 chr4 73070532 73070553 -82559567 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1142 406 163 0 55 chr4 73070630 73070721 -82559399 - MERVL_2A-int LTR ERVL -148 5613 5528 1 1142 24507 78 25 1 chr4 73071027 73072421 -82557699 + L1Md_F LINE L1 570 1969 -3914 1 1142 243 0 0 0 chr4 73072421 73072448 -82557672 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1142 24507 92 39 2 chr4 73072448 73075475 -82554645 + L1Md_F LINE L1 1970 5135 -748 1 1142 4758 93 23 17 chr4 73075475 73076184 -82553936 + L1Md_F2 LINE L1 5870 6582 0 1 1142 2148 92 0 19 chr4 73077057 73077367 -82552753 + L1Md_F2 LINE L1 6267 6570 -12 1 1142 338 36 36 0 chr4 73077986 73078042 -82552078 + L1Md_F2 LINE L1 6491 6548 -34 1 1142 451 0 17 17 chr4 73078042 73078102 -82552018 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1 1142 285 29 0 0 chr4 73078375 73078409 -82551711 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1142 4602 319 35 21 chr4 73079457 73081297 -82548823 + RMER15-int LTR ERVL 257 2122 -2877 1 1142 24 32 0 0 chr4 73081319 73081350 -82548770 + AT_rich Low_complexity Low_complexity 1 31 0 1 1142 566 180 116 36 chr4 73081709 73081847 -82548273 + B1F2 SINE Alu 1 149 0 1 1142 25 0 0 0 chr4 73081977 73082002 -82548118 + AT_rich Low_complexity Low_complexity 1 25 0 1 1142 351 0 0 0 chr4 73082611 73082650 -82547470 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1142 1144 75 0 0 chr4 73082664 73082811 -82547309 - B1_Mus2 SINE Alu 0 147 1 1 1142 636 328 12 16 chr4 73084424 73084675 -82545445 + RMER15-int LTR ERVL 2105 2354 -2645 1 1142 430 313 46 10 chr4 73084741 73084938 -82545182 + RMER15-int LTR ERVL 2356 2559 -2440 1 1142 280 269 9 61 chr4 73085643 73085758 -82544362 + RMER15-int LTR ERVL 4889 4997 -2 1 1142 196 269 60 71 chr4 73086888 73086972 -82543148 - MIR SINE MIR -148 114 32 1 1142 1274 274 59 15 chr4 73087780 73088554 -82541566 + Lx9 LINE L1 742 1557 -4290 1 1142 21 0 0 0 chr4 73088575 73088596 -82541524 + AT_rich Low_complexity Low_complexity 1 21 0 1 1142 759 274 104 28 chr4 73088599 73089128 -82540992 + Lx9 LINE L1 2743 3311 -2536 1 1142 2306 108 45 6 chr4 73089128 73089482 -82540638 + Lx LINE L1 6287 6654 0 1 1142 2029 276 63 22 chr4 73089519 73090198 -82539922 + RMER1C Other Other 632 1338 -4 1 1142 556 249 62 29 chr4 73090191 73090431 -82539689 + Lx9 LINE L1 3332 3579 -2268 1 1142 1471 246 89 42 chr4 73090470 73091275 -82538845 + Lx9 LINE L1 3849 4720 -1160 1 1142 1607 188 126 29 chr4 73091280 73091630 -82538490 - ORR1B1 LTR MaLR -8 386 3 1 1142 2670 246 93 26 chr4 73091633 73092009 -82538111 + Lx9 LINE L1 4694 5094 -753 1 1142 258 32 0 0 chr4 73092009 73092040 -82538080 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1142 2670 248 86 25 chr4 73092040 73092829 -82537291 + Lx9 LINE L1 5095 5969 -1675 1 1142 32 26 0 0 chr4 73093502 73093541 -82536579 + AT_rich Low_complexity Low_complexity 1 39 0 1 1142 2881 70 42 3 chr4 73093958 73094343 -82535777 + MTB LTR MaLR 1 400 0 1 1142 213 121 0 0 chr4 73094714 73094747 -82535373 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1142 374 281 11 0 chr4 73094765 73094854 -82535266 - MLT1J-int LTR MaLR -1160 227 138 1 1142 3937 36 0 15 chr4 73094872 73095300 -82534820 - L1Md_T LINE L1 0 6582 6161 1 1142 2654 37 9 21 chr4 73095300 73095631 -82534489 + IAPLTR2b LTR ERVK 1 327 0 1 1142 3937 36 0 15 chr4 73095631 73095678 -82534442 - L1Md_T LINE L1 -422 6160 6114 1 1142 226 223 0 37 chr4 73096116 73096223 -82533897 + (CATA)n Simple_repeat Simple_repeat 1 103 0 1 1142 5950 53 12 18 chr4 73096320 73097089 -82533031 - L1Md_F2 LINE L1 -14 6568 5805 1 1142 468 81 0 0 chr4 73098425 73098499 -82531621 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1 1142 675 216 0 15 chr4 73098933 73099069 -82531051 + RLTR42-int LTR ERVK 4006 4139 -1383 1 1142 186 189 0 0 chr4 73099198 73099235 -82530885 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1142 539 241 27 40 chr4 73099379 73099534 -82530586 - B1_Mur2 SINE Alu -1 148 1 1 1142 2657 232 102 9 chr4 73099583 73100331 -82529789 + RLTR40 LTR ERVK 1 817 0 1 1142 1580 249 29 105 chr4 73100410 73100866 -82529254 + RLTR42-int LTR ERVK 4263 4669 -853 1 1142 1953 123 58 6 chr4 73100866 73101177 -82528943 - ORR1A2 LTR MaLR 0 327 1 1 1142 1580 249 29 105 chr4 73101177 73101349 -82528771 + RLTR42-int LTR ERVK 4670 4843 -679 1 1142 416 91 11 33 chr4 73102136 73102227 -82527893 + (TTTTG)n Simple_repeat Simple_repeat 1 89 0 1 1142 246 62 0 0 chr4 73102229 73102261 -82527859 + (GGTTG)n Simple_repeat Simple_repeat 2 33 0 1 1142 465 172 256 8 chr4 73102264 73102381 -82527739 - B1_Mus1 SINE Alu -1 147 2 1 1142 763 169 21 49 chr4 73102387 73102530 -82527590 - B2_Mm2 SINE B2 -27 168 30 1 1142 1144 124 6 17 chr4 73103172 73103333 -82526787 + B2_Mm2 SINE B2 1 161 -34 1 1142 348 24 0 0 chr4 73103333 73103374 -82526746 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 1142 1144 124 6 17 chr4 73103374 73103393 -82526727 + B2_Mm2 SINE B2 162 179 -16 1 1142 647 269 58 78 chr4 73103783 73104041 -82526079 + MTEb LTR MaLR 3 255 -124 1 1142 608 278 31 0 chr4 73105280 73105503 -82524617 + L1MB5 LINE L1 5679 5908 -266 1 1142 409 206 20 0 chr4 73105578 73105680 -82524440 + L1MB5 LINE L1 6044 6147 -27 1 1142 1665 248 97 80 chr4 73105735 73106625 -82523495 - RMER13B LTR ERVK -3 905 1 1 1142 210 143 0 0 chr4 73107865 73107900 -82522220 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1 1142 207 167 0 0 chr4 73109075 73109117 -82521003 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1142 1143 287 58 6 chr4 73109128 73109475 -82520645 + ORR1D2 LTR MaLR 3 367 -3 1 1142 626 259 14 0 chr4 73109486 73109625 -82520495 - B1F2 SINE Alu -7 142 2 1 1142 366 320 75 66 chr4 73109658 73109899 -82520221 + L1ME4a LINE L1 5608 5850 -274 1 1142 4074 215 41 48 chr4 73110149 73111276 -82518844 - RMER12 LTR ERVK -161 1411 24 1 1142 859 295 124 22 chr4 73111364 73111735 -82518385 - RMER5 LTR ERV1 -62 472 64 1 1142 1061 302 23 90 chr4 73111744 73112090 -82518030 - RLTR18B LTR ERVK -189 323 1 1 1142 1644 270 54 26 chr4 73112498 73112996 -82517124 - RMER20A LTR ERVK -4 512 1 1 1142 723 218 28 0 chr4 73113032 73113174 -82516946 + B1_Mur2 SINE Alu 1 146 -3 1 1142 249 33 0 0 chr4 73113199 73113229 -82516891 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1142 813 192 4 8 chr4 73114097 73114344 -82515776 + GA-rich Low_complexity Low_complexity 1 245 0 1 1142 318 26 0 0 chr4 73115254 73115293 -82514827 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1142 1352 251 106 14 chr4 73115540 73115900 -82514220 - MTD LTR MaLR -14 405 13 1 1142 2577 42 0 0 chr4 73116069 73116382 -82513738 + L1Md_F2 LINE L1 6258 6570 -12 1 1142 2499 260 60 7 chr4 73116657 73117380 -82512740 - Lx6 LINE L1 -2 7458 6652 1 1142 1514 249 39 16 chr4 73118408 73118791 -82511329 - RMER5 LTR ERV1 -142 392 1 1 1142 855 189 124 47 chr4 73118832 73119078 -82511042 + ORR1B1 LTR MaLR 2 228 -146 1 1142 13888 152 87 77 chr4 73119078 73121070 -82509050 + L1_Mus3 LINE L1 235 2449 -3434 1 1142 1551 179 143 0 chr4 73121070 73121399 -82508721 + RLTR1 LTR ERV1 249 624 0 1 1142 13888 152 87 77 chr4 73121399 73122507 -82507613 + L1_Mus3 LINE L1 2450 3683 -2200 1 1142 222 37 0 0 chr4 73122507 73122534 -82507586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1142 13888 144 78 76 chr4 73122534 73125480 -82504640 + L1_Mus3 LINE L1 3684 6637 -1 1 1142 1542 75 0 38 chr4 73125554 73125790 -82504330 - RLTR9F LTR ERVK -188 227 1 1 1142 1028 142 6 6 chr4 73125807 73125970 -82504150 + ORR1B1 LTR MaLR 232 394 0 1 1142 310 270 14 0 chr4 73126110 73126184 -82503936 + MLT1H-int LTR MaLR 511 585 -824 1 1142 1046 287 67 39 chr4 73126518 73127219 -82502901 + RLTR40 LTR ERVK 1 817 0 1 1142 3457 23 2 0 chr4 73127558 73127953 -82502167 - MTA_Mm LTR MaLR 0 396 1 1 1142 6889 18 8 0 chr4 73127953 73128785 -82501335 - MTA_Mm-int LTR MaLR 0 1098 260 1 1142 425 179 127 8 chr4 73128791 73128909 -82501211 + RMER1A Other Other 894 1025 -5 1 1142 721 281 102 69 chr4 73128963 73129400 -82500720 - RLTR11B LTR ERVK -19 509 1 1 1142 215 300 43 0 chr4 73129439 73129509 -82500611 + GA-rich Low_complexity Low_complexity 4 76 0 1 1142 216 0 0 0 chr4 73130557 73130581 -82499539 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1142 22 35 0 0 chr4 73131375 73131404 -82498716 + AT_rich Low_complexity Low_complexity 1 29 0 1 1142 872 255 160 11 chr4 73132471 73132941 -82497179 + L1_Mur3 LINE L1 3876 4434 -1709 1 1142 274 256 225 6 chr4 73132945 73133114 -82497006 + L1_Mur3 LINE L1 4750 4955 -1188 1 1142 898 288 24 4 chr4 73133272 73133523 -82496597 + Lx7 LINE L1 7065 7320 -376 1 1142 443 131 35 35 chr4 73133531 73133674 -82496446 + T-rich Low_complexity Low_complexity 2 144 0 1 1142 331 279 51 1 chr4 73133826 73134156 -82495964 + L1_Mur3 LINE L1 5099 5464 -827 1 1142 662 289 93 4 chr4 73134163 73134441 -82495679 + L1M2 LINE L1 4004 4306 -1837 1 1142 185 0 40 0 chr4 73134603 73134628 -82495492 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1142 279 296 47 36 chr4 73134631 73134853 -82495267 + L1_Mur3 LINE L1 5560 5825 -475 1 1142 408 304 101 0 chr4 73134913 73135170 -82494950 + L1_Mur3 LINE L1 3532 3814 -2066 1 1142 439 178 33 0 chr4 73135548 73135638 -82494482 - Lx3B LINE L1 0 6973 6881 1 1142 1885 128 2 183 chr4 73135638 73135737 -82494383 + L1_Mur1 LINE L1 2917 3015 -2871 1 1142 1012 65 50 0 chr4 73135737 73135876 -82494244 + B1_Mus2 SINE Alu 2 147 0 1 1142 1885 128 2 183 chr4 73135876 73136301 -82493819 + L1_Mur1 LINE L1 3016 3346 -2540 1 1142 4616 139 1 4 chr4 73136852 73137678 -82492442 + L1_Mus2 LINE L1 5094 5916 -650 1 1143 280 268 58 11 chr4 73138456 73138543 -82491577 + MTEa LTR MaLR 289 379 0 1 1143 25 75 0 0 chr4 73138662 73138715 -82491405 + AT_rich Low_complexity Low_complexity 1 53 0 1 1143 441 0 0 0 chr4 73139178 73139227 -82490893 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1143 342 0 0 0 chr4 73139227 73139264 -82490856 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1143 597 216 0 0 chr4 73139380 73139514 -82490606 + CT-rich Low_complexity Low_complexity 3 136 0 1 1143 1079 52 0 0 chr4 73139516 73139652 -82490468 - B1_Mm SINE Alu -1 146 11 1 1143 1889 53 0 4 chr4 73139826 73140071 -82490049 + L1_Mus1 LINE L1 6323 6566 -1 1 1143 807 249 12 18 chr4 73141187 73141468 -82488652 + L1VL4 LINE L1 464 736 -5995 1 1143 28383 131 29 5 chr4 73141471 73147430 -82482690 - L1_Mus3 LINE L1 0 6638 584 1 1143 1922 209 28 62 chr4 73147589 73148088 -82482032 - RLTR25A LTR ERVK -3 1100 619 1 1143 269 26 0 0 chr4 73148088 73148126 -82481994 + Lx LINE L1 6341 6378 -276 1 1143 230 360 43 33 chr4 73149926 73150018 -82480102 + LTR33C LTR ERVL 269 361 -268 1 1143 410 194 194 28 chr4 73151226 73151406 -82478714 - Lx9 LINE L1 -9 7635 7426 1 1143 201 108 0 0 chr4 73151853 73151890 -82478230 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1143 1767 218 50 91 chr4 73152075 73152560 -82477560 + RMER19C LTR ERVK 147 611 0 2 1143 21 36 0 0 chr4 73153375 73153403 -82476717 + AT_rich Low_complexity Low_complexity 1 28 0 2 1143 6560 47 0 2 chr4 73154361 73155165 -82474955 - L1Md_F2 LINE L1 -136 6446 5645 2 1143 796 35 0 26 chr4 73155165 73155281 -82474839 + L1Md_F2 LINE L1 6459 6571 -11 2 1143 521 272 41 6 chr4 73155281 73155301 -82474819 - L1MC LINE L1 -2208 5674 5648 2 1143 2276 227 94 17 chr4 73156184 73156771 -82473349 - Lx2B LINE L1 -8 6992 6361 2 1143 1950 224 43 31 chr4 73156771 73157259 -82472861 + Lx4B LINE L1 5877 6370 -688 2 1143 457 267 18 11 chr4 73157745 73157879 -82472241 + MLT1A0 LTR MaLR 247 366 -24 2 1143 333 276 83 56 chr4 73158001 73158181 -82471939 - MER33 DNA MER1_type -86 238 54 2 1143 22 0 0 0 chr4 73158375 73158397 -82471723 + AT_rich Low_complexity Low_complexity 1 22 0 2 1143 374 95 32 0 chr4 73160167 73160230 -82469890 + (GGGGA)n Simple_repeat Simple_repeat 2 66 0 2 1143 3478 161 37 11 chr4 73161896 73162522 -82467598 + RLTR26 LTR ERVK 1 642 0 2 1143 237 362 26 8 chr4 73163267 73163384 -82466736 - MLT1D LTR MaLR -9 496 378 2 1143 651 238 0 0 chr4 73163384 73163628 -82466492 + (TG)n Simple_repeat Simple_repeat 1 244 0 2 1143 288 0 0 0 chr4 73165214 73165246 -82464874 + (TTAG)n Simple_repeat Simple_repeat 4 35 0 2 1143 630 262 21 0 chr4 73165258 73165399 -82464721 - RSINE1 SINE B4 -19 146 3 2 1143 614 188 9 0 chr4 73166497 73166609 -82463511 + ORR1D1 LTR MaLR 1 113 -261 2 1143 2515 55 58 3 chr4 73166678 73167007 -82463113 - L1_Mus1 LINE L1 0 6567 6221 2 1143 55 29 0 0 chr4 73167040 73167109 -82463011 + AT_rich Low_complexity Low_complexity 1 69 0 2 1143 259 382 22 0 chr4 73167464 73167553 -82462567 + LTR16E2 LTR ERVL 462 552 -16 2 1143 545 259 34 91 chr4 73167700 73167908 -82462212 - RMER15 LTR ERVL -17 558 363 2 1143 195 42 0 0 chr4 73169103 73169127 -82460993 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1143 1867 141 56 7 chr4 73169326 73169632 -82460488 - ORR1A4 LTR MaLR -8 321 1 2 1143 189 107 0 0 chr4 73169718 73169746 -82460374 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1143 1052 123 0 0 chr4 73169782 73169928 -82460192 + B1_Mus1 SINE Alu 3 148 0 2 1143 547 182 0 16 chr4 73169933 73170056 -82460064 + GA-rich Low_complexity Low_complexity 3 123 0 2 1143 407 281 58 58 chr4 73170449 73170604 -82459516 + MIR SINE MIR 2 156 -106 2 1143 2052 222 32 7 chr4 73170864 73171267 -82458853 - MTC LTR MaLR -8 413 1 2 1143 4043 214 101 22 chr4 73171266 73171375 -82458745 - MTC-int LTR MaLR 0 1258 1127 2 1143 2369 57 7 0 chr4 73171375 73171673 -82458447 + L1_Mus1 LINE L1 6268 6567 0 2 1143 4043 214 101 22 chr4 73171673 73172550 -82457570 - MTC-int LTR MaLR -132 1126 194 2 1143 1618 243 84 23 chr4 73172550 73173026 -82457094 - RLTR40 LTR ERVK -225 592 88 2 1143 276 156 0 0 chr4 73173027 73173072 -82457048 + Lx3B LINE L1 6471 6515 -461 2 1143 9635 154 23 14 chr4 73173065 73174949 -82455171 - Lx2A LINE L1 -466 5411 3510 2 1143 8164 138 19 3 chr4 73174946 73176478 -82453642 + Lx2A LINE L1 5413 6968 -40 2 1143 356 143 0 13 chr4 73176478 73176556 -82453564 + Lx2A LINE L1 6924 7000 -8 2 1143 2621 137 47 5 chr4 73176597 73177043 -82453077 + Lx3B LINE L1 6506 6970 -3 2 1143 26 0 0 0 chr4 73177043 73177069 -82453051 + AT_rich Low_complexity Low_complexity 1 26 0 2 1143 382 292 20 27 chr4 73177070 73177218 -82452902 - RLTR40 LTR ERVK -662 155 9 2 1143 245 259 58 12 chr4 73179303 73179389 -82450731 + MLT1E1A LTR MaLR 138 227 -453 2 1143 2355 127 16 8 chr4 73179599 73179979 -82450141 - RLTR9A2 LTR ERVK 0 383 1 2 1143 449 262 74 16 chr4 73179980 73180170 -82449950 - L1_Mur3 LINE L1 -860 5020 4820 2 1143 274 181 63 89 chr4 73180593 73180611 -82449509 - ORR1B1 LTR MaLR -303 91 72 2 1143 2106 133 16 0 chr4 73180611 73180933 -82449187 - ORR1A2 LTR MaLR 0 327 1 2 1143 9122 164 20 68 chr4 73180933 73182810 -82447310 - ORR1A2-int LTR MaLR 0 1792 6 2 1143 390 21 0 0 chr4 73183106 73183153 -82446967 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1143 239 266 0 15 chr4 73183758 73183823 -82446297 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 2 1143 297 0 0 0 chr4 73185098 73185131 -82444989 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1143 530 87 19 19 chr4 73185175 73185280 -82444840 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 2 1143 24 0 0 0 chr4 73185596 73185620 -82444500 + AT_rich Low_complexity Low_complexity 1 24 0 2 1143 264 30 0 0 chr4 73186433 73186466 -82443654 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1143 1056 226 65 50 chr4 73186580 73186849 -82443271 + ORR1D2 LTR MaLR 1 277 -93 2 1143 2066 134 13 0 chr4 73186849 73187154 -82442966 - RLTR27 LTR ERVK 0 309 1 2 1143 1192 154 80 25 chr4 73187164 73187403 -82442717 - MMERVK10C-int LTR ERVK -10 7571 7320 2 1143 3163 313 28 34 chr4 73187706 73189827 -82440293 - MMERVK10C-int LTR ERVK -2103 5478 3370 2 1143 513 182 0 39 chr4 73189980 73190083 -82440037 + ORR1D2 LTR MaLR 272 370 0 2 1143 1582 164 16 110 chr4 73191617 73191980 -82438140 - ORR1A4 LTR MaLR 0 329 1 2 1143 252 0 0 0 chr4 73192141 73192169 -82437951 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1143 404 177 0 0 chr4 73192809 73192871 -82437249 + ORR1C2 LTR MaLR 245 306 -78 2 1143 844 239 16 26 chr4 73192860 73193053 -82437067 + MTC LTR MaLR 221 411 -10 2 1143 204 163 0 23 chr4 73193379 73193423 -82436697 + T-rich Low_complexity Low_complexity 2 44 0 2 1143 11285 153 11 5 chr4 73194193 73196334 -82433786 - Lx2 LINE L1 -1050 4827 2673 2 1143 4839 188 42 45 chr4 73196339 73197916 -82432204 + Lx2 LINE L1 4863 6513 -484 2 1143 7161 84 42 2 chr4 73197916 73198909 -82431211 - RLTR13D4 LTR ERVK 0 1033 1 2 1143 4346 226 64 67 chr4 73198909 73199442 -82430678 + Lx2 LINE L1 6514 6997 0 2 1143 244 0 27 27 chr4 73199535 73199572 -82430548 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2 1143 4189 33 0 0 chr4 73199757 73200244 -82429876 + L1Md_T LINE L1 6096 6582 0 2 1143 323 23 0 22 chr4 73200555 73200600 -82429520 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2 1143 1067 96 7 0 chr4 73200619 73200765 -82429355 - B1_Mus1 SINE Alu 0 148 2 2 1143 232 275 8 8 chr4 73200659 73200780 -82429340 - ORR1E-int LTR MaLR -756 753 633 2 1143 319 343 29 43 chr4 73202440 73202580 -82427540 - ORR1E LTR MaLR -221 138 1 2 1143 413 265 43 102 chr4 73202603 73202838 -82427282 + L1MA10 LINE L1 6045 6265 -69 2 1143 185 146 21 0 chr4 73204291 73204339 -82425781 + CT-rich Low_complexity Low_complexity 2 50 0 2 1143 1630 214 47 18 chr4 73204362 73204742 -82425378 + RMER5 LTR ERV1 1 391 -143 2 1143 37 62 0 0 chr4 73204788 73204853 -82425267 + AT_rich Low_complexity Low_complexity 1 65 0 2 1143 482 215 61 15 chr4 73204954 73205084 -82425036 + RMER5 LTR ERV1 1 136 -398 2 1143 460 229 169 12 chr4 73205084 73205189 -82424931 - ORR1D2 LTR MaLR 0 370 240 2 1143 4161 196 70 14 chr4 73205189 73206049 -82424071 - RMER13B LTR ERVK 0 908 1 2 1143 460 229 169 12 chr4 73206049 73206115 -82424005 - ORR1D2 LTR MaLR -131 239 172 2 1143 273 307 174 70 chr4 73206052 73206311 -82423809 + RMER15 LTR ERVL 234 519 -56 2 1143 549 0 0 0 chr4 73206854 73206915 -82423205 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1143 431 63 16 0 chr4 73206915 73206977 -82423143 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1143 577 318 34 0 chr4 73206980 73207128 -82422992 - B3A SINE B2 -41 157 5 2 1143 511 318 55 14 chr4 73207129 73207410 -82422710 + MTD LTR MaLR 102 414 -7 2 1143 383 360 17 23 chr4 73207430 73207606 -82422514 + MTD-int LTR MaLR 21 195 -1063 2 1143 816 194 119 10 chr4 73207623 73207816 -82422304 + URR1A DNA MER1_type 13 226 0 2 1143 630 253 19 5 chr4 73207925 73208070 -82422050 + ETnERV2-int LTR ERVK 7070 7202 -204 2 1143 907 331 144 47 chr4 73208463 73209211 -82420909 + MTD-int LTR MaLR 354 1564 -16 2 1143 482 264 28 21 chr4 73209223 73209366 -82420754 + MTD LTR MaLR 255 398 -21 2 1143 483 18 0 0 chr4 73209640 73209696 -82420424 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1143 506 326 53 60 chr4 73209727 73210194 -82419926 - L1MD2 LINE L1 -462 5897 5434 2 1143 329 311 83 0 chr4 73212350 73212482 -82417638 - MER5A1 DNA MER1_type -1 165 23 2 1143 1434 234 136 19 chr4 73213491 73213866 -82416254 - MTD LTR MaLR 0 419 1 2 1143 250 214 0 18 chr4 73214331 73214388 -82415732 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 2 1143 277 322 40 12 chr4 73214667 73214840 -82415280 + L1_Mur3 LINE L1 671 848 -6880 2 1143 229 308 0 0 chr4 73215179 73215257 -82414863 + L1_Mur3 LINE L1 842 919 -6809 2 1143 468 259 42 7 chr4 73215375 73215622 -82414498 + L1_Mur3 LINE L1 1161 1414 -4466 2 1143 7214 80 4 11 chr4 73215623 73217156 -82412964 - L1_Mus1 LINE L1 0 6567 5079 2 1143 3227 124 2 2 chr4 73217155 73217680 -82412440 + L1_Mm LINE L1 4453 4977 -906 2 1143 2933 219 113 23 chr4 73217681 73218637 -82411483 + L1_Mur3 LINE L1 1406 2459 -3421 2 1143 789 82 0 0 chr4 73218637 73218747 -82411373 + (GA)n Simple_repeat Simple_repeat 2 111 0 2 1143 711 90 0 0 chr4 73218747 73218846 -82411274 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 2 1143 2933 219 113 23 chr4 73218846 73218980 -82411140 + L1_Mur3 LINE L1 2460 2594 -3286 2 1143 231 88 0 0 chr4 73218982 73219016 -82411104 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1143 1822 263 60 45 chr4 73219017 73219940 -82410180 - Lx5 LINE L1 -20 7030 6194 2 1143 1166 174 0 9 chr4 73219939 73220171 -82409949 + L1_Mur3 LINE L1 2599 2828 -3052 2 1143 3079 233 30 8 chr4 73220174 73220995 -82409125 + L1_Mur3 LINE L1 4998 5836 -44 2 1143 7213 54 3 0 chr4 73220995 73222091 -82408029 - L1Md_F2 LINE L1 -48 6534 5434 2 1143 485 15 0 15 chr4 73222093 73222160 -82407960 + L1Md_T LINE L1 6517 6582 0 2 1143 949 192 76 31 chr4 73222160 73222462 -82407658 - L1_Mur3 LINE L1 -1180 4700 4141 2 1143 4283 98 2 68 chr4 73222552 73223721 -82406399 + L1Md_F2 LINE L1 476 1563 -4320 2 1143 23951 64 1 1 chr4 73223721 73226974 -82403146 + L1Md_F2 LINE L1 2334 5586 -297 2 1143 7874 56 3 0 chr4 73226974 73227955 -82402165 + L1Md_F2 LINE L1 5587 6570 -12 2 1143 579 282 24 124 chr4 73227961 73228175 -82401945 + Lx7 LINE L1 7156 7333 -363 2 1143 183 42 0 0 chr4 73228175 73228199 -82401921 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 1143 579 282 24 124 chr4 73228199 73228364 -82401756 + Lx7 LINE L1 7334 7497 -199 2 1143 1044 105 0 40 chr4 73229903 73230052 -82400068 + B1_Mm SINE Alu 1 143 -4 2 1143 525 32 0 0 chr4 73230053 73230116 -82400004 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2 1143 1631 212 76 18 chr4 73230261 73230641 -82399479 - MTD LTR MaLR 0 419 21 2 1143 290 45 23 0 chr4 73230641 73230685 -82399435 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 2 1143 1631 212 76 18 chr4 73230685 73230697 -82399423 - MTD LTR MaLR -399 20 6 2 1143 224 30 0 29 chr4 73232941 73232975 -82397145 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 1143 1377 238 59 20 chr4 73233975 73234425 -82395695 + L1Md_A LINE L1 44 519 -6205 2 1143 5671 17 0 0 chr4 73234425 73235067 -82395053 + L1Md_A LINE L1 5941 6582 0 2 1143 1377 238 59 20 chr4 73235067 73235106 -82395014 + L1Md_A LINE L1 520 552 -6172 2 1143 4367 36 6 6 chr4 73235106 73235684 -82394436 + L1Md_F3 LINE L1 6038 6584 0 3 1143 1755 233 14 29 chr4 73236111 73236553 -82393567 + RMER5 LTR ERV1 1 435 -99 3 1143 1691 228 54 39 chr4 73236556 73236963 -82393157 + MTD LTR MaLR 1 413 -6 3 1143 302 253 43 32 chr4 73236969 73237063 -82393057 + RMER5 LTR ERV1 428 522 -12 3 1143 546 16 0 0 chr4 73237063 73237126 -82392994 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 1143 390 21 0 0 chr4 73237130 73237177 -82392943 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1143 504 0 0 0 chr4 73237177 73237233 -82392887 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1143 41 48 0 0 chr4 73237628 73237690 -82392430 + AT_rich Low_complexity Low_complexity 1 62 0 3 1143 6789 204 13 14 chr4 73237740 73239209 -82390911 - Lx4B LINE L1 -3 7055 5589 3 1143 6162 171 13 50 chr4 73239215 73240668 -82389452 - L1VL4 LINE L1 -2162 3715 2317 3 1143 1218 177 14 0 chr4 73240671 73240891 -82389229 + L1VL4 LINE L1 35 257 -6045 3 1143 6215 171 184 7 chr4 73240877 73243403 -82386717 + Lx LINE L1 3617 6653 -1 3 1143 612 164 0 0 chr4 73243403 73243513 -82386607 + A-rich Low_complexity Low_complexity 1 110 0 3 1143 528 292 60 28 chr4 73243517 73243576 -82386544 - MER2 DNA MER2_type -35 310 255 3 1143 2053 75 8 0 chr4 73243576 73243844 -82386276 + L1_Mus1 LINE L1 6297 6566 -1 3 1143 528 292 60 28 chr4 73243844 73244002 -82386118 - MER2 DNA MER2_type -91 254 86 3 1143 5033 174 14 25 chr4 73244030 73244298 -82385822 - L1VL4 LINE L1 -3551 2326 2055 3 1143 189 0 0 0 chr4 73244298 73244319 -82385801 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1143 5033 185 19 18 chr4 73244319 73245487 -82384633 - L1VL4 LINE L1 -3823 2054 888 3 1143 27 49 0 0 chr4 73245623 73245664 -82384456 + AT_rich Low_complexity Low_complexity 1 41 0 3 1143 359 205 94 36 chr4 73247279 73247471 -82382649 - Lx7 LINE L1 -109 7587 7385 3 1143 1830 232 27 15 chr4 73247477 73247879 -82382241 - MTC LTR MaLR -9 412 6 3 1143 3221 218 42 19 chr4 73247884 73248766 -82381354 - Lx7 LINE L1 -304 7392 6406 3 1143 2140 292 189 3 chr4 73248776 73249622 -82380498 - RMER1A Other Other -14 1016 14 3 1143 911 191 221 9 chr4 73250261 73250483 -82379637 - Lx7 LINE L1 -1283 6413 6145 3 1143 33 25 0 0 chr4 73250767 73250807 -82379313 + AT_rich Low_complexity Low_complexity 1 40 0 3 1143 689 275 32 42 chr4 73251187 73251403 -82378717 - B3 SINE B2 -2 214 1 3 1143 1414 130 122 4 chr4 73251484 73251762 -82378358 + L1_Mur2 LINE L1 5036 5346 -531 3 1143 1478 181 35 71 chr4 73251797 73252136 -82377984 + ORR1A4 LTR MaLR 1 327 -2 3 1143 630 188 68 27 chr4 73252138 73252286 -82377834 + L1_Mur2 LINE L1 5419 5572 -305 3 1143 6586 64 19 0 chr4 73252284 73253175 -82376945 - L1Md_F2 LINE L1 -132 5751 4844 3 1143 6516 50 2 4 chr4 73253177 73253988 -82376132 + L1Md_F2 LINE L1 5773 6582 0 3 1143 293 27 0 0 chr4 73253992 73254029 -82376091 + L1_Mur2 LINE L1 5558 5594 -283 3 1143 789 122 0 0 chr4 73254026 73254149 -82375971 - Lx LINE L1 -579 6075 5953 3 1143 3340 121 7 29 chr4 73254142 73254546 -82375574 + Lx LINE L1 6071 6468 -186 3 1143 2040 153 84 49 chr4 73254546 73254952 -82375168 + RLTR9B2 LTR ERVK 1 420 0 3 1143 3340 121 7 29 chr4 73254952 73255107 -82375013 + Lx LINE L1 6469 6618 -36 3 1143 557 89 122 26 chr4 73255116 73255147 -82374973 - RLTR31B_Mm LTR ERVK -431 126 94 3 1143 459 0 0 0 chr4 73255147 73255198 -82374922 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1143 351 0 0 0 chr4 73255198 73255236 -82374884 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1143 557 89 122 26 chr4 73255236 73255318 -82374802 - RLTR31B_Mm LTR ERVK -464 93 2 3 1143 5327 150 41 14 chr4 73255318 73256284 -82373836 + Lx4A LINE L1 6064 7056 -2 3 1143 2281 168 31 20 chr4 73258014 73258162 -82371958 - L1_Mur3 LINE L1 -2251 3629 3484 3 1143 771 21 0 0 chr4 73258162 73258255 -82371865 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 3 1143 2281 168 31 20 chr4 73258255 73258647 -82371473 - L1_Mur3 LINE L1 -2397 3483 3083 3 1143 5100 220 86 23 chr4 73258649 73259907 -82370213 + Lx6 LINE L1 6122 7458 -2 3 1143 1672 201 95 51 chr4 73260937 73261503 -82368617 - Lx3C LINE L1 -619 6357 5767 3 1143 1150 204 33 22 chr4 73261499 73261770 -82368350 + Lx2B LINE L1 6365 6638 -362 3 1143 853 267 39 52 chr4 73263985 73264293 -82365827 - Lx7 LINE L1 -890 6806 6503 3 1143 254 26 0 50 chr4 73264527 73264567 -82365553 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 3 1143 1007 122 0 26 chr4 73264582 73264733 -82365387 - B1_Mus1 SINE Alu 0 148 2 3 1143 279 200 35 12 chr4 73264733 73264819 -82365301 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1143 236 312 41 10 chr4 73264920 73265017 -82365103 + MT2A LTR ERVL 125 224 -309 3 1143 2472 243 44 51 chr4 73265140 73265928 -82364192 - ORR1A4-int LTR MaLR 0 1963 1181 3 1143 543 227 37 5 chr4 73265943 73266133 -82363987 + Lx4B LINE L1 6711 6997 -61 3 1143 322 295 0 18 chr4 73266172 73266210 -82363910 + A-rich Low_complexity Low_complexity 1 36 0 3 1143 1166 41 7 20 chr4 73266210 73266359 -82363761 + B1_Mus2 SINE Alu 1 147 0 3 1143 322 295 0 18 chr4 73266359 73266489 -82363631 + A-rich Low_complexity Low_complexity 37 166 0 3 1143 3226 237 64 53 chr4 73266493 73266797 -82363323 - ORR1A4-int LTR MaLR -718 1074 771 3 1143 2883 228 15 15 chr4 73266797 73267532 -82362588 + RMER19A LTR ERVK 1 735 -2 3 1143 3226 237 64 53 chr4 73267532 73268289 -82361831 - ORR1A4-int LTR MaLR -1022 770 1 3 1143 914 216 10 15 chr4 73268289 73268491 -82361629 - ORR1A4 LTR MaLR 0 329 129 3 1143 262 308 8 98 chr4 73268535 73268668 -82361452 + B1_Mur4 SINE Alu 24 144 -6 3 1143 246 202 70 81 chr4 73268723 73268809 -82361311 - PB1D10 SINE Alu -12 105 21 3 1144 353 321 14 74 chr4 73271418 73271566 -82358554 + B1_Mur4 SINE Alu 6 144 -6 3 1144 31521 83 6 9 chr4 73272969 73279011 -82351109 - L1Md_F2 LINE L1 0 6582 570 3 1144 464 151 0 55 chr4 73279317 73279408 -82350712 + MERVL_2A-int LTR ERVL 5528 5613 -148 3 1144 549 44 0 0 chr4 73279483 73279551 -82350569 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1144 423 0 0 0 chr4 73279551 73279597 -82350523 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1144 225 0 0 0 chr4 73279677 73279702 -82350418 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 3 1144 931 151 7 0 chr4 73279702 73279848 -82350272 - B1_Mus1 SINE Alu 0 148 2 3 1144 279 200 35 12 chr4 73279848 73279934 -82350186 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1144 2244 248 28 38 chr4 73280259 73281000 -82349120 - ORR1A4-int LTR MaLR 0 1963 1230 3 1144 590 239 64 7 chr4 73281002 73281252 -82348868 + Lx4B LINE L1 6638 6997 -61 3 1144 340 292 0 18 chr4 73281291 73281329 -82348791 + A-rich Low_complexity Low_complexity 1 36 0 3 1144 1172 41 7 20 chr4 73281329 73281478 -82348642 + B1_Mus2 SINE Alu 1 147 0 3 1144 340 292 0 18 chr4 73281478 73281610 -82348510 + A-rich Low_complexity Low_complexity 37 168 0 3 1144 2936 229 66 54 chr4 73281614 73281918 -82348202 - ORR1A4-int LTR MaLR -718 1074 771 3 1144 2976 224 18 18 chr4 73281918 73282653 -82347467 + RMER19A LTR ERVK 1 735 -2 3 1144 2936 229 66 54 chr4 73282653 73283409 -82346711 - ORR1A4-int LTR MaLR -1022 770 1 3 1144 841 209 10 16 chr4 73283417 73283611 -82346509 - ORR1A4 LTR MaLR -8 321 129 3 1144 219 308 8 98 chr4 73283655 73283788 -82346332 + B1_Mur4 SINE Alu 24 144 -6 3 1144 231 192 78 52 chr4 73283852 73283929 -82346191 - PB1D10 SINE Alu -18 99 21 3 1144 311 321 14 74 chr4 73286536 73286684 -82343436 + B1_Mur4 SINE Alu 6 144 -6 3 1144 34171 81 8 7 chr4 73288086 73291187 -82338933 - L1Md_F2 LINE L1 0 6582 3489 3 1144 513 0 0 0 chr4 73291187 73291244 -82338876 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 3 1144 34171 79 4 2 chr4 73291244 73294156 -82335964 - L1Md_F2 LINE L1 -2395 3488 570 3 1144 464 151 0 55 chr4 73294462 73294553 -82335567 + MERVL_2A-int LTR ERVL 5528 5613 -148 3 1144 477 50 0 0 chr4 73294628 73294688 -82335432 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1144 180 0 0 0 chr4 73294688 73294707 -82335413 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1144 202 208 0 83 chr4 73294721 73294805 -82335315 + T-rich Low_complexity Low_complexity 6 82 0 3 1144 931 151 7 0 chr4 73294805 73294951 -82335169 - B1_Mus1 SINE Alu 0 148 2 3 1144 279 200 35 12 chr4 73294951 73295037 -82335083 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1144 2199 241 38 47 chr4 73295362 73296103 -82334017 - ORR1A4-int LTR MaLR 0 1963 1230 3 1144 590 239 64 7 chr4 73296105 73296355 -82333765 + Lx4B LINE L1 6638 6997 -61 3 1144 1149 48 7 20 chr4 73296432 73296581 -82333539 + B1_Mus2 SINE Alu 1 147 0 3 1144 183 121 0 49 chr4 73296603 73296664 -82333456 + A-rich Low_complexity Low_complexity 3 60 0 3 1144 2868 236 66 53 chr4 73296713 73297017 -82333103 - ORR1A4-int LTR MaLR -718 1074 771 3 1144 2994 226 16 18 chr4 73297017 73297753 -82332367 + RMER19A LTR ERVK 1 735 -2 3 1144 2868 236 66 53 chr4 73297753 73298508 -82331612 - ORR1A4-int LTR MaLR -1022 770 1 3 1144 842 221 10 15 chr4 73298508 73298710 -82331410 - ORR1A4 LTR MaLR 0 329 129 3 1144 219 308 8 98 chr4 73298754 73298887 -82331233 + B1_Mur4 SINE Alu 24 144 -6 3 1144 220 206 78 52 chr4 73298951 73299028 -82331092 - PB1D10 SINE Alu -18 99 21 3 1144 311 321 14 74 chr4 73301638 73301786 -82328334 + B1_Mur4 SINE Alu 6 144 -6 3 1144 34223 80 8 7 chr4 73303190 73306292 -82323828 - L1Md_F2 LINE L1 0 6582 3489 3 1144 405 0 0 0 chr4 73306292 73306337 -82323783 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1144 34223 78 4 3 chr4 73306337 73309248 -82320872 - L1Md_F2 LINE L1 -2395 3488 570 3 1144 464 151 0 55 chr4 73309554 73309645 -82320475 + MERVL_2A-int LTR ERVL 5528 5613 -148 3 1144 444 37 0 0 chr4 73309720 73309774 -82320346 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1144 378 0 0 0 chr4 73309774 73309815 -82320305 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1144 245 156 0 135 chr4 73309829 73309918 -82320202 + T-rich Low_complexity Low_complexity 6 82 0 3 1144 917 158 7 0 chr4 73309918 73310064 -82320056 - B1_Mus1 SINE Alu 0 148 2 3 1144 270 200 35 12 chr4 73310064 73310150 -82319970 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1144 2227 238 38 47 chr4 73310475 73311216 -82318904 - ORR1A4-int LTR MaLR 0 1963 1230 3 1144 590 239 64 7 chr4 73311218 73311468 -82318652 + Lx4B LINE L1 6638 6997 -61 3 1144 1172 41 7 20 chr4 73311545 73311694 -82318426 + B1_Mus2 SINE Alu 1 147 0 3 1144 189 0 0 0 chr4 73311694 73311715 -82318405 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1144 295 173 18 46 chr4 73311728 73311837 -82318283 + A-rich Low_complexity Low_complexity 2 107 0 3 1144 2882 231 66 54 chr4 73311837 73312141 -82317979 - ORR1A4-int LTR MaLR -718 1074 771 3 1144 2976 224 18 18 chr4 73312141 73312876 -82317244 + RMER19A LTR ERVK 1 735 -2 3 1144 2882 231 66 54 chr4 73312876 73313632 -82316488 - ORR1A4-int LTR MaLR -1022 770 1 3 1144 851 216 10 15 chr4 73313632 73313834 -82316286 - ORR1A4 LTR MaLR 0 329 129 3 1144 219 308 8 98 chr4 73313878 73314011 -82316109 + B1_Mur4 SINE Alu 24 144 -6 3 1144 220 206 78 52 chr4 73314075 73314152 -82315968 - PB1D10 SINE Alu -18 99 21 3 1144 311 321 14 74 chr4 73316761 73316909 -82313211 + B1_Mur4 SINE Alu 6 144 -6 3 1144 34203 82 7 7 chr4 73318314 73321416 -82308704 - L1Md_F2 LINE L1 0 6582 3484 3 1144 534 16 0 0 chr4 73321416 73321479 -82308641 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 1144 34203 79 4 2 chr4 73321479 73324389 -82305731 - L1Md_F2 LINE L1 -2400 3483 570 3 1144 464 151 0 55 chr4 73324695 73324786 -82305334 + MERVL_2A-int LTR ERVL 5528 5613 -148 4 1144 567 43 0 0 chr4 73324861 73324931 -82305189 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1144 450 0 0 0 chr4 73324931 73324980 -82305140 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1144 225 0 0 0 chr4 73325058 73325083 -82305037 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 4 1144 931 151 7 0 chr4 73325083 73325229 -82304891 - B1_Mus1 SINE Alu 0 148 2 4 1144 279 200 35 12 chr4 73325229 73325315 -82304805 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 4 1144 2244 248 28 38 chr4 73325640 73326381 -82303739 - ORR1A4-int LTR MaLR 0 1963 1230 4 1144 579 243 64 7 chr4 73326383 73326633 -82303487 + Lx4B LINE L1 6638 6997 -61 4 1144 358 288 0 17 chr4 73326672 73326710 -82303410 + A-rich Low_complexity Low_complexity 1 36 0 4 1144 1172 41 7 20 chr4 73326710 73326859 -82303261 + B1_Mus2 SINE Alu 1 147 0 4 1144 358 288 0 17 chr4 73326859 73326993 -82303127 + A-rich Low_complexity Low_complexity 37 170 0 4 1144 2917 243 58 47 chr4 73326997 73327301 -82302819 - ORR1A4-int LTR MaLR -718 1074 771 4 1144 2974 227 16 18 chr4 73327301 73328037 -82302083 + RMER19A LTR ERVK 1 735 -2 4 1144 2917 243 58 47 chr4 73328037 73328794 -82301326 - ORR1A4-int LTR MaLR -1022 770 1 4 1144 851 216 10 15 chr4 73328794 73328996 -82301124 - ORR1A4 LTR MaLR 0 329 129 4 1144 219 308 8 98 chr4 73329040 73329173 -82300947 + B1_Mur4 SINE Alu 24 144 -6 4 1144 231 192 78 52 chr4 73329237 73329314 -82300806 - PB1D10 SINE Alu -18 99 21 4 1144 311 321 14 74 chr4 73331923 73332071 -82298049 + B1_Mur4 SINE Alu 6 144 -6 4 1144 31263 82 9 11 chr4 73333473 73336573 -82293547 - L1Md_F2 LINE L1 0 6582 3487 4 1144 498 17 0 0 chr4 73336573 73336632 -82293488 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 4 1144 31263 81 6 6 chr4 73336632 73339560 -82290560 - L1Md_F2 LINE L1 -2397 3486 570 4 1144 22910 115 13 2 chr4 73339802 73344232 -82285888 - L1Md_F LINE L1 -1054 4829 380 4 1144 21 0 0 0 chr4 73344388 73344409 -82285711 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 252 250 62 0 chr4 73344616 73344680 -82285440 + ORR1C1 LTR MaLR 3 70 -300 4 1144 271 273 128 13 chr4 73344843 73344921 -82285199 + ORR1C1 LTR MaLR 73 159 -200 4 1144 1668 221 49 17 chr4 73344941 73345347 -82284773 - MTD LTR MaLR 0 419 1 4 1144 6403 184 75 9 chr4 73345935 73347089 -82283031 + RMER12B LTR ERVK 1 1223 -181 4 1144 222 37 0 0 chr4 73347089 73347116 -82283004 + (TATG)n Simple_repeat Simple_repeat 3 29 0 4 1144 6403 184 75 9 chr4 73347116 73347152 -82282968 + RMER12B LTR ERVK 1224 1272 -132 4 1144 414 0 0 0 chr4 73347152 73347198 -82282922 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1144 6403 184 75 9 chr4 73347198 73347318 -82282802 + RMER12B LTR ERVK 1273 1398 -6 4 1144 21 0 0 0 chr4 73348299 73348320 -82281800 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 505 226 19 0 chr4 73348523 73348629 -82281491 + Lx9 LINE L1 7088 7195 -449 4 1144 8413 137 41 5 chr4 73348772 73350754 -82279366 + Lx2 LINE L1 4922 6997 0 4 1144 767 224 29 29 chr4 73350755 73350930 -82279190 + ORR1C1 LTR MaLR 202 376 -2 4 1144 2605 206 59 6 chr4 73350942 73351566 -82278554 + Lx9 LINE L1 6809 7465 -179 4 1144 708 270 69 122 chr4 73351583 73352108 -82278012 + MT2A LTR ERVL 28 517 -38 4 1144 23 33 0 0 chr4 73352887 73352917 -82277203 + AT_rich Low_complexity Low_complexity 1 30 0 4 1144 36351 45 2 7 chr4 73352917 73359081 -82271039 - L1Md_T LINE L1 -13 6569 445 4 1144 290 377 89 9 chr4 73359516 73359730 -82270390 - MIR SINE MIR -31 231 1 4 1144 240 100 0 0 chr4 73359834 73359874 -82270246 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1144 1701 87 4 0 chr4 73359985 73360215 -82269905 - L1_Mus2 LINE L1 0 6566 6336 4 1144 22 0 0 0 chr4 73360907 73360929 -82269191 + AT_rich Low_complexity Low_complexity 1 22 0 4 1144 489 348 25 19 chr4 73361938 73362099 -82268021 - RSINE1 SINE B4 0 165 4 4 1144 729 245 108 138 chr4 73363976 73364317 -82265803 + ORR1D2 LTR MaLR 1 331 -39 4 1144 405 141 0 0 chr4 73364352 73364423 -82265697 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1144 180 0 0 0 chr4 73364445 73364465 -82265655 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1144 31 0 0 0 chr4 73364575 73364606 -82265514 + AT_rich Low_complexity Low_complexity 1 31 0 4 1144 3062 89 23 5 chr4 73365300 73365741 -82264379 + Lx LINE L1 6206 6654 0 4 1144 23 0 0 0 chr4 73365789 73365812 -82264308 + AT_rich Low_complexity Low_complexity 1 23 0 4 1144 2756 47 12 0 chr4 73365961 73366302 -82263818 + ORR1A1 LTR MaLR 2 346 0 4 1144 13148 61 28 10 chr4 73366302 73368062 -82262058 + ORR1A1-int LTR MaLR 1 1792 0 4 1144 2858 52 3 0 chr4 73368062 73368407 -82261713 + ORR1A1 LTR MaLR 1 346 0 4 1144 852 274 27 0 chr4 73368534 73368720 -82261400 - B3 SINE B2 -20 196 6 4 1144 219 241 17 69 chr4 73368967 73369025 -82261095 - MIR3 SINE MIR -27 181 127 4 1144 3656 56 19 62 chr4 73369111 73369626 -82260494 + MT2_Mm LTR ERVL 1 493 0 4 1144 303 295 18 45 chr4 73369626 73369736 -82260384 + RSINE1 SINE B4 5 111 -54 4 1144 300 27 0 0 chr4 73369758 73369795 -82260325 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1144 1659 210 107 3 chr4 73371003 73371357 -82258763 - MTD LTR MaLR -8 411 21 4 1144 211 0 57 29 chr4 73371357 73371392 -82258728 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 1144 1432 227 336 26 chr4 73371415 73372066 -82258054 - MTD-int LTR MaLR -5 1253 401 4 1144 1679 244 84 0 chr4 73372074 73372456 -82257664 - MTD LTR MaLR -5 414 1 4 1144 3331 40 2 0 chr4 73372946 73373341 -82256779 - MTA_Mm LTR MaLR 0 396 1 4 1144 624 254 0 14 chr4 73373632 73373776 -82256344 + B1_Mus2 SINE Alu 1 142 -5 4 1144 230 160 20 0 chr4 73373788 73373838 -82256282 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4 1144 261 316 102 0 chr4 73373932 73374030 -82256090 + PB1D10 SINE Alu 9 116 -1 4 1144 391 184 54 27 chr4 73374496 73374608 -82255512 - Lx2B LINE L1 -1 6999 6885 4 1144 228 67 0 0 chr4 73376528 73376558 -82253562 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1144 21 36 0 0 chr4 73379493 73379521 -82250599 + AT_rich Low_complexity Low_complexity 1 28 0 4 1144 588 171 0 0 chr4 73382037 73382148 -82247972 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 1144 252 308 54 36 chr4 73382178 73382289 -82247831 - RMER12 LTR ERVK -486 836 724 4 1144 1214 216 30 18 chr4 73382504 73382843 -82247277 - L1_Mur3 LINE L1 -2218 3662 3320 4 1144 38 39 0 0 chr4 73382843 73382895 -82247225 + AT_rich Low_complexity Low_complexity 1 52 0 4 1144 239 122 20 0 chr4 73382899 73382948 -82247172 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1144 1188 201 5 0 chr4 73382948 73383167 -82246953 + URR1A DNA MER1_type 7 226 0 4 1144 2886 244 29 44 chr4 73383167 73383571 -82246549 + Lx7 LINE L1 4904 5327 -553 4 1144 2521 79 3 9 chr4 73383571 73383915 -82246205 + L1_Mus1 LINE L1 6226 6567 0 4 1144 2886 248 29 45 chr4 73383915 73384542 -82245578 + Lx7 LINE L1 5328 5923 -1550 4 1144 1453 257 79 16 chr4 73384548 73385065 -82245055 + Lx7 LINE L1 6765 7314 -382 4 1144 523 89 35 18 chr4 73385105 73385219 -82244901 + (TTTC)n Simple_repeat Simple_repeat 3 118 0 4 1144 1197 95 12 0 chr4 73385328 73385497 -82244623 + L1_Mus1 LINE L1 6391 6561 -6 4 1144 241 200 0 35 chr4 73385512 73385569 -82244551 + GA-rich Low_complexity Low_complexity 4 58 0 4 1144 417 312 26 65 chr4 73387529 73387759 -82242361 - RMER15 LTR ERVL -68 507 287 4 1144 292 283 21 11 chr4 73388630 73388723 -82241397 + RMER15 LTR ERVL 422 515 -60 4 1144 1568 204 98 44 chr4 73388850 73389348 -82240772 + RLTR11A LTR ERVK 1 525 -3 4 1144 549 83 0 0 chr4 73389437 73389521 -82240599 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1144 24 32 0 0 chr4 73389843 73389874 -82240246 + AT_rich Low_complexity Low_complexity 1 31 0 4 1144 970 245 56 25 chr4 73391234 73391518 -82238602 + L1VL2 LINE L1 68 360 -5975 4 1144 7641 142 21 25 chr4 73391534 73392944 -82237176 + Lx2 LINE L1 5587 6991 -6 4 1144 579 85 0 0 chr4 73393545 73393627 -82236493 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1144 411 21 0 0 chr4 73393997 73394045 -82236075 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1144 390 42 0 0 chr4 73394045 73394092 -82236028 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1144 227 261 25 58 chr4 73394871 73394998 -82235122 + MIR SINE MIR 117 236 -26 4 1144 252 86 0 0 chr4 73395347 73395382 -82234738 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1144 195 42 0 0 chr4 73395630 73395654 -82234466 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1144 2043 188 89 14 chr4 73395919 73396356 -82233764 + RLTR12A LTR ERVK 1 470 -98 4 17 29818 52 56 4 chr4 73396356 73401594 -82228526 + L1Md_T LINE L1 1 5589 -297 4 1145 8325 37 1 3 chr4 73401594 73402619 -82227501 + L1Md_T LINE L1 5590 6585 0 4 1145 408 217 11 11 chr4 73402622 73402715 -82227405 + RLTR12A LTR ERVK 459 551 -17 4 1145 766 244 13 70 chr4 73403249 73403478 -82226642 + B3 SINE B2 1 216 0 4 1145 389 319 0 0 chr4 73403523 73403617 -82226503 + B1_Mur3 SINE Alu 1 94 -55 4 1145 257 283 48 89 chr4 73403525 73403649 -82226471 + MT2B LTR ERVL 167 285 -316 4 1145 441 90 0 0 chr4 73403653 73403720 -82226400 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1145 1333 224 145 8 chr4 73404196 73404561 -82225559 + MTC LTR MaLR 3 417 -4 4 1145 21 36 0 0 chr4 73405000 73405028 -82225092 + AT_rich Low_complexity Low_complexity 1 28 0 4 1145 1124 251 74 14 chr4 73405186 73405552 -82224568 + MTD LTR MaLR 1 414 -5 4 1145 633 118 151 0 chr4 73406055 73406174 -82223946 - RMER6B LTR ERVK -324 137 1 4 1145 242 361 0 0 chr4 73406277 73406360 -82223760 - ID_B1 SINE B4 -13 211 129 4 1145 254 300 24 134 chr4 73406568 73406695 -82223425 + B1F2 SINE Alu 29 141 -8 4 1145 304 333 83 0 chr4 73407183 73407315 -82222805 - L1M2 LINE L1 -1276 4867 4725 4 1145 1428 90 9 5 chr4 73407770 73407994 -82222126 - L1_Mur1 LINE L1 -3298 2588 2364 4 1145 867 249 66 0 chr4 73409439 73409636 -82220484 + B3 SINE B2 2 211 -5 4 1145 514 240 20 20 chr4 73409686 73409839 -82220281 - RLTR42-int LTR ERVK -2658 2864 2712 4 1145 1854 233 37 49 chr4 73409940 73410674 -82219446 + Lx9 LINE L1 5278 6040 -1604 4 1145 2400 276 147 31 chr4 73410712 73412031 -82218089 + Lx9 LINE L1 6160 7631 -13 4 1145 678 100 0 0 chr4 73412702 73412802 -82217318 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 1145 314 340 125 78 chr4 73412866 73413135 -82216985 + L1MC LINE L1 4370 4654 -1492 5 1145 1133 78 0 0 chr4 73413135 73413277 -82216843 + B1_Mus1 SINE Alu 1 142 -6 5 1145 364 315 130 40 chr4 73413277 73413617 -82216503 + L1MC LINE L1 4650 5010 -1136 5 1145 183 205 0 0 chr4 73413622 73413661 -82216459 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1145 497 133 200 0 chr4 73413880 73413985 -82216135 + B1_Mus1 SINE Alu 1 126 -22 5 1145 503 43 29 0 chr4 73413996 73414065 -82216055 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 1145 207 0 0 0 chr4 73415506 73415529 -82214591 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1145 886 191 217 0 chr4 73416155 73416297 -82213823 + RMER12 LTR ERVK 605 771 -551 5 1145 324 0 0 0 chr4 73416297 73416333 -82213787 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1145 886 191 217 0 chr4 73416333 73416425 -82213695 + RMER12 LTR ERVK 772 889 -433 5 1145 504 126 0 0 chr4 73416425 73416512 -82213608 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1145 862 230 53 144 chr4 73416533 73416894 -82213226 + RMER12 LTR ERVK 995 1322 0 5 1145 596 369 111 8 chr4 73417810 73418198 -82211922 - MER21B LTR ERV1 -122 741 314 5 1145 188 24 23 68 chr4 73418290 73418334 -82211786 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1145 237 65 0 0 chr4 73418481 73418512 -82211608 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1145 1717 213 93 8 chr4 73418544 73418932 -82211188 + MTC LTR MaLR 1 421 0 5 1145 393 284 0 0 chr4 73419642 73419723 -82210397 - B3 SINE B2 -7 209 129 5 1145 245 254 0 119 chr4 73419726 73419793 -82210327 + PB1D10 SINE Alu 36 94 -23 5 1145 30 0 0 0 chr4 73420457 73420487 -82209633 + AT_rich Low_complexity Low_complexity 1 30 0 5 1145 929 295 50 58 chr4 73420813 73420892 -82209228 + MLT1B LTR MaLR 1 74 -316 5 1145 1397 161 0 0 chr4 73420892 73421116 -82209004 - URR1B DNA MER1_type 0 225 2 5 1145 929 295 50 58 chr4 73421116 73421399 -82208721 + MLT1B LTR MaLR 75 360 -30 5 1145 21 0 0 0 chr4 73421592 73421613 -82208507 + AT_rich Low_complexity Low_complexity 1 21 0 5 1145 189 0 0 0 chr4 73422124 73422145 -82207975 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1145 390 259 42 34 chr4 73422354 73422486 -82207634 + PB1D10 SINE Alu 1 141 -8 5 1145 491 31 0 15 chr4 73423002 73423068 -82207052 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 5 1145 1186 62 0 0 chr4 73423335 73423481 -82206639 - B1_Mus2 SINE Alu 0 147 2 5 1145 263 318 45 86 chr4 73424869 73425089 -82205031 + BLACKJACK DNA AcHobo 603 813 -2131 5 1145 30 0 0 0 chr4 73425514 73425544 -82204576 + AT_rich Low_complexity Low_complexity 1 30 0 5 1145 318 323 195 19 chr4 73425606 73425811 -82204309 + MLT2D LTR ERVL 114 354 -60 5 1145 1228 216 70 63 chr4 73426871 73427313 -82202807 + RLTR20C LTR ERVK 1 446 -132 5 1145 2947 250 70 18 chr4 73427575 73428462 -82201658 + Lx7 LINE L1 6432 7364 -332 5 1145 257 222 39 13 chr4 73428474 73428564 -82201556 + T-rich Low_complexity Low_complexity 1 92 0 5 1145 334 215 64 0 chr4 73428841 73428938 -82201182 + Lx8 LINE L1 6322 6423 -1050 5 1145 465 291 0 0 chr4 73428940 73429105 -82201015 + (TA)n Simple_repeat Simple_repeat 2 166 0 5 1145 393 333 0 14 chr4 73429119 73429265 -82200855 + Lx8 LINE L1 6507 6650 -823 5 1145 316 178 5 10 chr4 73429267 73429346 -82200774 - ORR1D2 LTR MaLR -255 119 42 5 1145 925 231 162 8 chr4 73429412 73429678 -82200442 + ORR1D2 LTR MaLR 6 312 -58 5 1145 247 196 143 0 chr4 73430123 73430179 -82199941 + ORR1D2 LTR MaLR 307 370 0 5 1145 1286 275 49 6 chr4 73430247 73430594 -82199526 - ORR1D2 LTR MaLR -8 362 1 5 1145 721 318 119 14 chr4 73430605 73431026 -82199094 + Lx8 LINE L1 6757 7221 -252 5 1145 1720 212 54 35 chr4 73431124 73431143 -82198977 + MTD LTR MaLR 4 18 -401 5 1145 186 43 0 0 chr4 73431143 73431166 -82198954 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1145 1720 212 54 35 chr4 73431166 73431552 -82198568 + MTD LTR MaLR 19 417 -2 5 1145 376 209 71 2 chr4 73432224 73432342 -82197778 + RMER12 LTR ERVK 1129 1274 -48 5 1145 1167 263 55 37 chr4 73432597 73432980 -82197140 + RLTR11A2 LTR ERVK 7 396 -131 5 1145 246 200 257 0 chr4 73432992 73433062 -82197058 + RLTR11A2 LTR ERVK 440 527 0 5 1145 274 284 58 78 chr4 73433232 73433438 -82196682 + Charlie16a DNA MER1_type 8 209 -133 5 1145 671 250 48 16 chr4 73433450 73433637 -82196483 + B3A SINE B2 1 193 -5 5 1145 892 39 124 58 chr4 73433808 73433945 -82196175 + B1_Mm SINE Alu 2 147 0 5 1145 369 0 0 0 chr4 73433967 73434008 -82196112 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 1145 1108 102 0 0 chr4 73434008 73434165 -82195955 - B2_Mm2 SINE B2 -38 157 1 5 1145 503 157 9 163 chr4 73434747 73434908 -82195212 + Lx LINE L1 5767 5908 -1089 5 1145 2440 166 79 32 chr4 73434905 73435435 -82194685 + Lx LINE L1 6096 6650 -4 5 1145 411 56 0 0 chr4 73437667 73437721 -82192399 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1145 219 109 20 61 chr4 73437721 73437770 -82192350 + A-rich Low_complexity Low_complexity 2 48 0 5 1145 312 319 81 32 chr4 73437797 73438043 -82192077 - Lx7 LINE L1 -438 7258 7001 5 1145 1777 202 22 14 chr4 73438088 73438445 -82191675 - RLTR28B LTR ERVL -121 360 1 5 1145 2732 315 121 55 chr4 73438445 73439639 -82190481 - MTE-int LTR MaLR -304 1276 4 5 1145 543 228 101 45 chr4 73439641 73439820 -82190300 - RMER15 LTR ERVL -386 189 1 5 1145 930 318 59 19 chr4 73439836 73440160 -82189960 - MTE2b LTR MaLR -42 337 1 5 1145 258 402 9 18 chr4 73441164 73441278 -82188842 - MLT1H2 LTR MaLR -296 193 81 5 1145 404 355 48 34 chr4 73441456 73441663 -82188457 + MER20 DNA MER1_type 4 213 -6 5 1145 305 217 56 7 chr4 73442848 73442992 -82187128 + (TA)n Simple_repeat Simple_repeat 1 151 0 5 1145 462 264 29 52 chr4 73443218 73443341 -82186779 + RSINE1 SINE B4 3 121 -44 5 1145 450 36 0 0 chr4 73443341 73443397 -82186723 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1145 462 264 29 52 chr4 73443397 73443409 -82186711 + RSINE1 SINE B4 122 134 -31 5 1145 621 27 0 0 chr4 73443732 73443807 -82186313 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1145 277 319 109 69 chr4 73443860 73444035 -82186085 + MLT1E2 LTR MaLR 251 432 -195 5 1145 22 56 0 0 chr4 73444257 73444293 -82185827 + AT_rich Low_complexity Low_complexity 1 36 0 5 1145 37404 32 1 6 chr4 73444313 73450489 -82179631 - L1Md_A LINE L1 -2 6580 441 5 1145 257 196 0 0 chr4 73450570 73450635 -82179485 - L1_Mur3 LINE L1 -722 5164 5092 5 1145 797 139 14 0 chr4 73450703 73450847 -82179273 + CT-rich Low_complexity Low_complexity 3 148 0 5 1145 396 322 60 0 chr4 73450872 73451021 -82179099 - Lx8 LINE L1 -181 7292 7135 5 1145 271 161 35 35 chr4 73451077 73451135 -82178985 - Lx5 LINE L1 -530 6520 6463 5 1145 234 31 0 0 chr4 73451133 73451165 -82178955 + Lx5 LINE L1 6520 6551 -499 5 1145 1691 156 36 0 chr4 73451168 73451596 -82178524 + L1_Mur3 LINE L1 1117 1560 -4320 5 1145 4476 224 77 25 chr4 73451609 73452861 -82177259 + Lx7 LINE L1 5587 6903 -793 5 1145 257 68 23 0 chr4 73452862 73452906 -82177214 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1145 1205 277 31 15 chr4 73452916 73453305 -82176815 - Lx6 LINE L1 -69 7391 6997 5 1145 467 178 93 0 chr4 73453305 73453412 -82176708 - RMER4B LTR ERVK -468 117 1 5 1145 5669 258 45 8 chr4 73453471 73454331 -82175789 + Lx6 LINE L1 5865 6743 -717 5 1145 561 68 0 0 chr4 73454331 73454405 -82175715 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 5 1145 5669 258 45 8 chr4 73454405 73455069 -82175051 + Lx6 LINE L1 6744 7445 -15 5 1145 3843 251 27 8 chr4 73455099 73456172 -82173948 + Lx9 LINE L1 6545 7637 -7 5 1145 210 37 0 0 chr4 73456308 73456335 -82173785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1145 1109 88 0 20 chr4 73456335 73456478 -82173642 - B1_Mus1 SINE Alu -6 142 2 5 1145 198 306 77 51 chr4 73457455 73457572 -82172548 + MIR SINE MIR 145 267 -1 5 1145 840 239 43 4 chr4 73458131 73458284 -82171836 - Lx9 LINE L1 -644 7000 6838 5 1145 1530 184 99 38 chr4 73458284 73458628 -82171492 + ORR1B2 LTR MaLR 3 367 0 5 1145 840 239 43 4 chr4 73458628 73458705 -82171415 - Lx9 LINE L1 -807 6837 6762 5 1145 573 200 185 13 chr4 73458720 73458877 -82171243 - Lx9 LINE L1 -949 6695 6512 5 1145 988 242 165 0 chr4 73458878 73459229 -82170891 - L1_Mur3 LINE L1 -3821 2059 1651 5 1145 230 57 36 36 chr4 73459233 73459288 -82170832 + (TTTTG)n Simple_repeat Simple_repeat 5 59 0 5 1145 1775 147 115 219 chr4 73459334 73459977 -82170143 - RMER6C LTR ERVK -4 686 111 5 1145 942 224 58 20 chr4 73459988 73460334 -82169786 - L1_Mur3 LINE L1 -4278 1602 1244 5 1145 587 259 0 0 chr4 73460352 73460460 -82169660 + B1_Mur2 SINE Alu 3 110 -39 5 1145 28900 36 0 63 chr4 73460476 73463293 -82166827 - L1Md_T LINE L1 0 6582 4085 5 1145 8677 21 0 1 chr4 73463293 73464290 -82165830 + L1Md_A LINE L1 5587 6582 0 5 1145 28900 27 0 84 chr4 73464290 73466386 -82163734 - L1Md_T LINE L1 -1799 4084 2024 5 1145 305 294 123 0 chr4 73466482 73466669 -82163451 - L1_Mur3 LINE L1 -6610 1118 909 5 1145 1895 222 2 26 chr4 73466685 73467110 -82163010 + MTC LTR MaLR 5 419 -2 5 1145 2545 105 5 27 chr4 73467649 73468051 -82162069 - L1_Mus3 LINE L1 0 6638 6246 5 1145 2570 144 30 11 chr4 73469164 73469503 -82160617 + L1_Mur2 LINE L1 161 503 -6209 5 1145 189 0 0 0 chr4 73469503 73469524 -82160596 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 1145 2570 144 30 11 chr4 73469524 73469653 -82160467 + L1_Mur2 LINE L1 504 637 -6075 5 1145 746 22 11 0 chr4 73470058 73470150 -82159970 + (TC)n Simple_repeat Simple_repeat 1 93 0 5 1145 296 48 24 0 chr4 73470152 73470194 -82159926 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1145 428 261 62 42 chr4 73471145 73471289 -82158831 + B1F1 SINE Alu 3 149 0 5 1145 262 242 48 0 chr4 73471298 73471360 -82158760 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 5 1145 1226 188 0 13 chr4 73471690 73471917 -82158203 - URR1B DNA MER1_type 0 225 2 5 1145 1301 257 191 38 chr4 73471931 73472120 -82158000 + RMER15 LTR ERVL 27 234 -341 5 1145 1444 211 74 20 chr4 73472120 73472473 -82157647 + ORR1D1 LTR MaLR 3 374 0 5 1145 1301 257 191 38 chr4 73472473 73472728 -82157392 + RMER15 LTR ERVL 235 539 -36 5 1145 2200 304 85 24 chr4 73473440 73474509 -82155611 - Lx9 LINE L1 0 7644 6511 5 1145 35900 47 0 3 chr4 73474683 73480934 -82149186 - L1Md_T LINE L1 0 6585 252 5 1145 441 0 0 0 chr4 73481484 73481533 -82148587 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1145 189 0 0 0 chr4 73481699 73481720 -82148400 + (TTG)n Simple_repeat Simple_repeat 2 22 0 5 1145 787 281 172 28 chr4 73482792 73483221 -82146899 - RMER5 LTR ERV1 0 534 44 6 1145 28 29 0 0 chr4 73483328 73483363 -82146757 + AT_rich Low_complexity Low_complexity 1 35 0 6 1145 248 371 36 43 chr4 73483533 73483671 -82146449 + RSINE1 SINE B4 27 163 -2 6 1145 181 167 0 0 chr4 73483965 73483995 -82146125 - MER5A DNA MER1_type -118 71 42 6 1145 785 186 105 9 chr4 73485040 73485268 -82144852 + Lx9 LINE L1 7373 7622 -22 6 1145 375 202 30 0 chr4 73485272 73485371 -82144749 - RMER1A Other Other -7 1023 922 6 1145 2043 239 123 109 chr4 73485390 73486292 -82143828 - RMER17B LTR ERVK -43 915 1 6 1145 3651 227 45 16 chr4 73486292 73487129 -82142991 - RMER1A Other Other -103 927 66 6 1145 670 215 113 0 chr4 73487148 73487325 -82142795 - RMER1B Other Other -794 272 76 6 1145 396 286 24 0 chr4 73487796 73487880 -82142240 + RSINE1 SINE B4 55 140 -25 6 1145 207 0 0 0 chr4 73487903 73487926 -82142194 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1145 393 129 0 0 chr4 73487935 73488005 -82142115 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1145 243 114 0 0 chr4 73488006 73488050 -82142070 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1145 2664 76 162 69 chr4 73488583 73489034 -82141086 + MT2_Mm LTR ERVL 1 493 0 6 1145 28190 43 20 8 chr4 73489034 73492669 -82137451 + MERVL-int LTR ERVL 1 3680 -1805 6 1145 4386 20 0 0 chr4 73492669 73493162 -82136958 + MT2_Mm LTR ERVL 1 493 0 6 1145 45175 16 6 0 chr4 73493162 73498489 -82131631 + MERVL-int LTR ERVL 1 5360 -125 6 1145 351 191 46 35 chr4 73498489 73498576 -82131544 + ORR1A3-int LTR MaLR 553 640 -1323 6 1145 302 0 0 0 chr4 73498576 73498614 -82131506 + MERVL-int LTR ERVL 5448 5485 0 6 1145 4386 20 0 0 chr4 73498614 73499107 -82131013 + MT2_Mm LTR ERVL 1 493 0 6 1145 1817 40 0 0 chr4 73499107 73499332 -82130788 + MERVL-int LTR ERVL 3676 3900 -1585 6 1145 986 62 0 0 chr4 73499328 73499456 -82130664 + MERVL-int LTR ERVL 4268 4395 -1366 6 1145 4031 73 4 0 chr4 73499456 73500000 -82130120 + MERVL-int LTR ERVL 3877 4422 -1063 6 1145 6699 101 14 12 chr4 73500000 73500932 -82129188 + MERVL-int LTR ERVL 4423 5356 -129 1 1145 35692 76 2 7 chr4 73500993 73507425 -82122695 - L1Md_F2 LINE L1 0 6582 251 2 1145 309 130 56 0 chr4 73507443 73507497 -82122623 + MERVL-int LTR ERVL 5573 5629 -132 1 1145 246 203 0 45 chr4 73507497 73507564 -82122556 + ORR1A3-int LTR MaLR 567 630 -1333 3 1145 317 128 0 0 chr4 73507564 73507611 -82122509 + MERVL-int LTR ERVL 5439 5485 0 4 1145 3386 96 15 6 chr4 73507611 73508082 -82122038 + MT2C_Mm LTR ERVL 1 475 0 4 1145 1662 193 120 54 chr4 73508145 73508388 -82121732 - RLTR19 LTR ERVK 0 499 253 5 1145 2747 99 5 27 chr4 73508388 73508793 -82121327 + MTA_Mm LTR MaLR 1 396 0 6 1145 1662 193 120 54 chr4 73508793 73508879 -82121241 - RLTR19 LTR ERVK -247 252 181 5 1145 4584 87 12 27 chr4 73508879 73509539 -82120581 - L1Md_F2 LINE L1 -1 6581 5932 7 1145 1662 193 120 54 chr4 73509539 73509674 -82120446 - RLTR19 LTR ERVK -319 180 3 5 1145 658 267 48 0 chr4 73509785 73509972 -82120148 - URR1B DNA MER1_type -29 196 1 8 1145 14288 90 2 0 chr4 73511186 73513863 -82116257 - L1Md_F LINE L1 -2632 3251 570 9 1145 452 237 56 31 chr4 73514169 73514330 -82115790 + MERVL_2A-int LTR ERVL 5528 5692 -69 1 1145 345 47 0 0 chr4 73514337 73514380 -82115740 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1145 227 207 0 17 chr4 73514399 73514458 -82115662 + T-rich Low_complexity Low_complexity 1 58 0 1 1145 831 146 7 0 chr4 73514461 73514598 -82115522 - B1_Mm SINE Alu 0 147 10 1 1145 442 224 41 140 chr4 73514598 73514629 -82115491 - B4 SINE B4 -69 220 70 1 1145 10353 80 3 20 chr4 73514656 73516086 -82114034 + L1Md_T LINE L1 4182 5586 -297 1 1145 8380 42 0 4 chr4 73516086 73517086 -82113034 + L1Md_T LINE L1 5587 6582 0 1 1145 7287 84 6 10 chr4 73517112 73518112 -82112008 + L1Md_F2 LINE L1 5587 6582 0 1 1145 255 350 14 74 chr4 73519514 73519662 -82110458 - B1_Mur4 SINE Alu -6 144 6 1 1145 224 206 78 52 chr4 73522273 73522350 -82107770 + PB1D10 SINE Alu 21 99 -18 1 1145 250 292 8 98 chr4 73522414 73522547 -82107573 - B1_Mur4 SINE Alu -6 144 24 1 1145 851 216 10 15 chr4 73522591 73522793 -82107327 + ORR1A4 LTR MaLR 129 329 0 2 1145 2907 236 65 53 chr4 73522793 73523549 -82106571 + ORR1A4-int LTR MaLR 1 770 -1022 2 1145 2887 234 14 15 chr4 73523549 73524285 -82105835 - RMER19A LTR ERVK -2 735 1 2 1145 2907 236 65 53 chr4 73524285 73524589 -82105531 + ORR1A4-int LTR MaLR 771 1074 -718 2 1145 602 235 27 10 chr4 73524685 73524946 -82105174 - Lx4B LINE L1 -56 7002 6638 2 1145 2190 251 30 40 chr4 73524949 73525691 -82104429 + ORR1A4-int LTR MaLR 1230 1963 0 2 1145 182 141 37 49 chr4 73526012 73526094 -82104026 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 2 1145 976 135 0 20 chr4 73526096 73526247 -82103873 + B1_Mus1 SINE Alu 1 148 0 2 1145 220 27 26 26 chr4 73526247 73526285 -82103835 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 2 1145 612 40 0 0 chr4 73526352 73526427 -82103693 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1145 417 39 0 0 chr4 73526427 73526478 -82103642 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1145 417 185 118 93 chr4 73526478 73526639 -82103481 - MERVL_2A-int LTR ERVL -69 5692 5528 2 143 32351 81 2 2 chr4 73526945 73531964 -82098156 + L1Md_F2 LINE L1 570 5586 -297 2 1146 7406 78 11 9 chr4 73531964 73532958 -82097162 + L1Md_F2 LINE L1 5587 6582 0 2 1146 255 350 14 74 chr4 73534360 73534508 -82095612 - B1_Mur4 SINE Alu -6 144 6 3 1146 224 206 78 52 chr4 73537119 73537196 -82092924 + PB1D10 SINE Alu 21 99 -18 3 1146 250 292 8 98 chr4 73537260 73537393 -82092727 - B1_Mur4 SINE Alu -6 144 24 3 1146 851 216 10 15 chr4 73537437 73537639 -82092481 + ORR1A4 LTR MaLR 129 329 0 3 1146 2929 233 65 53 chr4 73537639 73538395 -82091725 + ORR1A4-int LTR MaLR 1 770 -1022 3 1146 2887 234 14 15 chr4 73538395 73539131 -82090989 - RMER19A LTR ERVK -2 735 1 3 1146 2929 233 65 53 chr4 73539131 73539435 -82090685 + ORR1A4-int LTR MaLR 771 1074 -718 3 1146 602 235 27 10 chr4 73539531 73539792 -82090328 - Lx4B LINE L1 -56 7002 6638 3 1146 2205 253 30 39 chr4 73539795 73540536 -82089584 + ORR1A4-int LTR MaLR 1230 1963 0 3 1146 182 141 37 49 chr4 73540857 73540939 -82089181 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3 1146 976 135 0 20 chr4 73540941 73541092 -82089028 + B1_Mus1 SINE Alu 1 148 0 3 1146 220 27 26 26 chr4 73541092 73541130 -82088990 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 3 1146 576 42 0 0 chr4 73541197 73541268 -82088852 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1146 381 43 0 0 chr4 73541268 73541315 -82088805 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1146 417 185 118 93 chr4 73541315 73541476 -82088644 - MERVL_2A-int LTR ERVL -69 5692 5528 4 1146 32295 81 2 2 chr4 73541782 73546800 -82083320 + L1Md_F2 LINE L1 570 5586 -297 4 1146 7331 81 11 14 chr4 73546800 73547799 -82082321 + L1Md_F2 LINE L1 5587 6582 0 4 1146 255 350 14 74 chr4 73549201 73549349 -82080771 - B1_Mur4 SINE Alu -6 144 6 4 1146 224 206 78 52 chr4 73551960 73552037 -82078083 + PB1D10 SINE Alu 21 99 -18 4 1146 250 292 8 98 chr4 73552101 73552234 -82077886 - B1_Mur4 SINE Alu -6 144 24 4 1146 851 216 10 15 chr4 73552278 73552480 -82077640 + ORR1A4 LTR MaLR 129 329 0 4 1146 2916 234 65 53 chr4 73552480 73553236 -82076884 + ORR1A4-int LTR MaLR 1 770 -1022 4 1146 2887 234 14 15 chr4 73553236 73553972 -82076148 - RMER19A LTR ERVK -2 735 1 4 1146 2916 234 65 53 chr4 73553972 73554276 -82075844 + ORR1A4-int LTR MaLR 771 1074 -718 4 1146 602 235 27 10 chr4 73554372 73554633 -82075487 - Lx4B LINE L1 -56 7002 6638 4 1146 2201 254 28 40 chr4 73554636 73555379 -82074741 + ORR1A4-int LTR MaLR 1230 1963 0 4 1146 182 141 37 49 chr4 73555700 73555782 -82074338 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 4 1146 976 135 0 20 chr4 73555784 73555935 -82074185 + B1_Mus1 SINE Alu 1 148 0 5 1146 180 0 0 0 chr4 73555935 73555955 -82074165 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 5 1146 540 45 0 0 chr4 73556022 73556089 -82074031 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1146 381 43 0 0 chr4 73556089 73556136 -82073984 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1146 417 185 118 93 chr4 73556136 73556297 -82073823 - MERVL_2A-int LTR ERVL -69 5692 5528 5 1146 30189 82 1 2 chr4 73556603 73561622 -82068498 + L1Md_F2 LINE L1 570 5586 -297 5 1146 7189 81 11 13 chr4 73561622 73562620 -82067500 + L1Md_F2 LINE L1 5587 6582 0 5 1146 300 350 14 74 chr4 73564022 73564170 -82065950 - B1_Mur4 SINE Alu -6 144 6 5 1146 230 167 34 85 chr4 73564238 73564297 -82065823 - MT2B2 LTR ERVL -528 56 1 5 1146 239 219 78 52 chr4 73566767 73566844 -82063276 + PB1D10 SINE Alu 21 99 -18 5 1146 288 269 15 105 chr4 73566908 73567041 -82063079 - B1_Mur4 SINE Alu -6 144 24 5 1146 889 221 10 15 chr4 73567085 73567287 -82062833 + ORR1A4 LTR MaLR 129 329 0 6 1146 3171 227 71 53 chr4 73567287 73568037 -82062083 + ORR1A4-int LTR MaLR 1 770 -1022 6 1146 2724 238 22 22 chr4 73568037 73568772 -82061348 - RMER19A LTR ERVK -2 735 1 6 1146 3171 227 71 53 chr4 73568772 73569076 -82061044 + ORR1A4-int LTR MaLR 771 1074 -718 6 1146 560 247 21 12 chr4 73569174 73569414 -82060706 - Lx3C LINE L1 -54 7004 6672 6 1146 2358 258 43 51 chr4 73569416 73570175 -82059945 + ORR1A4-int LTR MaLR 1211 1963 0 6 1146 249 208 39 0 chr4 73570496 73570573 -82059547 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 6 1146 950 143 0 0 chr4 73570573 73570713 -82059407 + B1_Mus1 SINE Alu 2 141 -7 6 1146 321 98 23 47 chr4 73570714 73570800 -82059320 + A-rich Low_complexity Low_complexity 1 84 0 6 1146 456 35 0 0 chr4 73570831 73570889 -82059231 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1146 364 186 0 55 chr4 73570959 73571050 -82059070 - MERVL_2A-int LTR ERVL -148 5613 5528 6 1146 30001 82 1 1 chr4 73571355 73576375 -82053745 + L1Md_F2 LINE L1 570 5586 -297 6 1146 7464 67 18 1 chr4 73576376 73577352 -82052768 + L1Md_F2 LINE L1 5588 6580 -2 6 1146 5018 89 0 10 chr4 73577369 73578081 -82052039 + L1Md_F2 LINE L1 5782 6486 -96 6 1146 34066 37 6 9 chr4 73578078 73583262 -82046858 + L1Md_T LINE L1 438 5586 -297 7 1146 8334 35 2 1 chr4 73583262 73584257 -82045863 + L1Md_T LINE L1 5587 6582 0 7 1146 180 0 0 0 chr4 73584284 73584304 -82045816 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1146 505 87 45 63 chr4 73584304 73584415 -82045705 + L1Md_F2 LINE L1 6473 6581 -1 6 1146 822 220 83 24 chr4 73584418 73584623 -82045497 + MTD LTR MaLR 203 419 0 7 1146 240 111 0 0 chr4 73585958 73585994 -82044126 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 7 1146 1016 132 0 11 chr4 73585998 73586174 -82043946 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 7 1146 432 170 44 33 chr4 73586192 73586283 -82043837 - B1_Mur3 SINE Alu -16 133 42 7 1146 917 129 0 66 chr4 73586283 73586466 -82043654 + (TCTCTG)n Simple_repeat Simple_repeat 6 176 0 7 1146 195 188 0 0 chr4 73586976 73587024 -82043096 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1146 286 250 0 30 chr4 73587090 73587222 -82042898 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 7 1146 356 276 8 16 chr4 73587237 73587366 -82042754 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 7 1146 315 169 0 0 chr4 73587374 73587445 -82042675 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1146 1159 284 41 70 chr4 73589593 73590283 -82039837 + L1MB5 LINE L1 5494 6163 -11 8 1146 219 36 0 0 chr4 73590523 73590551 -82039569 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8 1146 263 370 43 62 chr4 73590754 73590964 -82039156 + L2 LINE L2 2626 2831 -588 8 1146 279 0 0 0 chr4 73592328 73592359 -82037761 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1146 240 164 0 0 chr4 73592593 73592660 -82037460 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 8 1146 584 217 13 154 chr4 73592718 73592836 -82037284 - MTD LTR MaLR -247 172 57 8 1146 522 294 156 11 chr4 73592836 73593015 -82037105 - B3 SINE B2 -11 205 1 8 1146 584 208 11 163 chr4 73593015 73593099 -82037021 - MTD LTR MaLR -338 81 12 8 1146 1511 232 60 56 chr4 73593106 73593608 -82036512 - MTD-int LTR MaLR 0 1258 755 8 1146 331 239 139 35 chr4 73593637 73593810 -82036310 + L1MC1 LINE L1 5976 6166 -167 8 1146 5605 88 14 4 chr4 73594126 73594903 -82035217 + L1_Mus4 LINE L1 5851 6635 -1 8 1146 708 129 0 8 chr4 73595232 73595357 -82034763 + Lx LINE L1 6525 6648 -6 8 1146 259 237 77 26 chr4 73595414 73595492 -82034628 + B1F SINE Alu 39 120 -29 9 1146 459 0 0 0 chr4 73595502 73595553 -82034567 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 9 1146 356 272 184 18 chr4 73598005 73598222 -82031898 + L1ME4a LINE L1 5635 5887 -237 9 1146 47 53 0 0 chr4 73598687 73598762 -82031358 + AT_rich Low_complexity Low_complexity 1 75 0 9 1146 337 328 52 104 chr4 73598996 73599207 -82030913 + MER57C2 LTR ERV1 156 378 -56 9 1146 534 269 77 51 chr4 73599914 73600110 -82030010 - MTEa LTR MaLR -9 370 170 9 1146 294 259 115 29 chr4 73600181 73600320 -82029800 - RMER15 LTR ERVL -78 497 347 9 1146 258 95 0 0 chr4 73600600 73600642 -82029478 + (TTTAG)n Simple_repeat Simple_repeat 3 44 0 9 1146 3274 46 5 0 chr4 73600856 73601250 -82028870 + MTA_Mm LTR MaLR 1 396 0 9 1146 22 0 0 0 chr4 73601262 73601284 -82028836 + AT_rich Low_complexity Low_complexity 1 22 0 9 1146 180 0 0 0 chr4 73601498 73601518 -82028602 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1146 335 366 94 47 chr4 73601531 73601872 -82028248 - ORR1E LTR MaLR 0 359 3 1 1146 203 250 66 74 chr4 73602316 73602437 -82027683 + MIR SINE MIR 108 227 -35 1 1146 3552 145 29 26 chr4 73602778 73603809 -82026311 + L1VL4 LINE L1 207 1245 -2314 1 1146 5770 145 47 8 chr4 73603817 73604999 -82025121 + Lx LINE L1 5427 6654 0 1 1146 2712 87 13 20 chr4 73604967 73605414 -82024706 + L1VL4 LINE L1 2517 2960 -599 1 1146 1229 48 0 0 chr4 73605414 73605560 -82024560 + B1_Mus2 SINE Alu 1 146 -1 1 1146 6890 107 19 2 chr4 73605560 73606810 -82023310 + L1_Mus4 LINE L1 5363 6628 -8 1 1146 419 250 10 20 chr4 73607067 73607169 -82022951 - MTE2a LTR MaLR -6 373 273 1 1146 1483 253 110 22 chr4 73607173 73607662 -82022458 - RMER5 LTR ERV1 0 534 3 1 1146 612 309 47 113 chr4 73607684 73607958 -82022162 - MTE2a LTR MaLR -120 259 4 1 1146 324 0 0 0 chr4 73608310 73608348 -82021772 - tRNA-Ile-ATA tRNA tRNA -39 38 1 1 1146 666 278 108 14 chr4 73608351 73608548 -82021572 + MTD LTR MaLR 29 245 -174 1 1146 1861 284 47 45 chr4 73608548 73609073 -82021047 - RLTR18 LTR ERVK 0 616 98 1 1146 318 50 0 0 chr4 73609073 73609113 -82021007 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1146 1861 284 47 45 chr4 73609113 73609181 -82020939 - RLTR18 LTR ERVK -519 97 23 1 1146 538 243 138 49 chr4 73609453 73609678 -82020442 + MTD LTR MaLR 167 411 -8 1 1146 234 169 56 14 chr4 73610468 73610540 -82019580 + (TTTA)n Simple_repeat Simple_repeat 3 77 0 1 1146 484 49 0 0 chr4 73610564 73610625 -82019495 + B2_Mm1t SINE B2 1 61 -132 1 1146 796 189 13 13 chr4 73610742 73610892 -82019228 - RLTR9E LTR ERVK -16 393 244 1 1146 9360 61 0 0 chr4 73610892 73612129 -82017991 + L1Md_F2 LINE L1 4335 5571 -312 1 1146 8033 48 0 4 chr4 73612129 73613115 -82017005 + L1Md_F2 LINE L1 5587 6568 -14 1 1146 21 0 0 0 chr4 73613115 73613136 -82016984 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 821 207 7 7 chr4 73614112 73614263 -82015857 + RMER5 LTR ERV1 21 171 -363 1 1146 270 139 0 0 chr4 73614263 73614306 -82015814 + RMER6-int LTR ERVK 2375 2417 -760 1 1146 563 228 62 0 chr4 73614303 73614448 -82015672 + MYSERV-int LTR ERVK 4266 4419 -2131 1 1146 3890 211 96 27 chr4 73614547 73616378 -82013742 + MYSERV16_I-int LTR ERVK 319 2324 -2 1 1146 2172 149 26 12 chr4 73616379 73616794 -82013326 + BGLII LTR ERVK 1 421 0 1 1146 979 255 27 15 chr4 73616825 73617088 -82013032 + RMER5 LTR ERV1 260 525 -9 1 1146 1963 66 0 8 chr4 73617123 73617381 -82012739 - L1_Mus1 LINE L1 0 6567 6312 1 1146 11208 88 7 7 chr4 73617381 73619483 -82010637 + L1_Mus1 LINE L1 4173 6275 -292 1 1146 212 441 49 0 chr4 73620054 73620197 -82009923 - L2a LINE L2 -272 3154 3005 1 1146 1890 237 54 46 chr4 73620768 73621578 -82008542 + L1_Mur3 LINE L1 1243 2059 -3821 1 1146 356 306 18 0 chr4 73621583 73621694 -82008426 + RMER1A Other Other 198 310 -720 1 1146 2220 243 50 52 chr4 73621678 73622385 -82007735 + Lx7 LINE L1 6992 7696 0 1 1146 2353 276 85 18 chr4 73622399 73623453 -82006667 + Lx7 LINE L1 6254 7418 -278 1 1146 441 286 84 66 chr4 73624021 73624264 -82005856 - MTE2a LTR MaLR -130 249 1 1 1146 634 268 25 55 chr4 73624264 73624501 -82005619 + Lx8 LINE L1 6373 6602 -871 1 1146 1053 331 108 25 chr4 73625824 73626304 -82003816 - MLT-int LTR MaLR -8 1727 1208 1 1146 580 391 60 57 chr4 73626428 73626780 -82003340 - MLT-int LTR MaLR -776 959 607 1 1146 2500 116 59 18 chr4 73627204 73627591 -82002529 + RLTR9D LTR ERVK 1 403 0 1 1146 180 0 0 0 chr4 73627760 73627780 -82002340 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1146 728 193 65 96 chr4 73628184 73628413 -82001707 + Lx6 LINE L1 7213 7434 -26 1 1146 227 348 22 0 chr4 73628753 73628891 -82001229 - L1M5 LINE L1 -278 5884 5744 1 1146 772 298 62 48 chr4 73628898 73629272 -82000848 - MTE2a LTR MaLR 0 379 1 1 1146 23 78 0 0 chr4 73630253 73630304 -81999816 + AT_rich Low_complexity Low_complexity 1 51 0 1 1146 540 319 62 53 chr4 73630472 73630951 -81999169 + RLTR15 LTR ERVK 14 518 -10 1 1146 1495 304 54 14 chr4 73631059 73631693 -81998427 - Lx8 LINE L1 -317 7156 6498 1 1146 470 229 0 0 chr4 73631800 73631905 -81998215 - Lx8 LINE L1 -978 6495 6391 1 1146 1710 159 10 33 chr4 73631996 73632301 -81997819 - ORR1B2 LTR MaLR 0 367 70 1 1146 611 308 18 14 chr4 73632891 73633168 -81996952 + L1_Mur3 LINE L1 1617 1894 -3986 1 1146 21 36 0 0 chr4 73633169 73633197 -81996923 + AT_rich Low_complexity Low_complexity 1 28 0 1 1146 188 34 0 33 chr4 73633421 73633451 -81996669 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1146 381 278 103 35 chr4 73633638 73633890 -81996230 + L1_Mur3 LINE L1 2151 2452 -3395 1 1146 5161 139 30 2 chr4 73633926 73634774 -81995346 - Lx LINE L1 -1 6653 5783 1 1146 2145 85 6 9 chr4 73634789 73635109 -81995011 - L1Md_F2 LINE L1 -4 6578 6260 1 1146 1367 58 5 31 chr4 73635106 73635210 -81994910 - L1_Mus4 LINE L1 -861 5775 5677 1 1146 2947 63 97 93 chr4 73635210 73635683 -81994437 - MT2C_Mm LTR ERVL 0 475 1 1 1146 1367 58 5 31 chr4 73635683 73635772 -81994348 - L1_Mus4 LINE L1 -960 5676 5587 1 1146 18326 148 15 5 chr4 73635782 73639889 -81990231 - L1_Mus4 LINE L1 -129 6507 2365 1 1146 2975 21 0 0 chr4 73639889 73640226 -81989894 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1146 18326 159 16 7 chr4 73640226 73640243 -81989877 - L1_Mus4 LINE L1 -3519 2364 2350 1 1146 6874 28 2 6 chr4 73640243 73641087 -81989033 - IAPEz-int LTR ERVK -17 6464 5624 1 1146 20907 34 34 14 chr4 73641071 73643761 -81986359 - IAPEz-int LTR ERVK -3729 2752 8 1 1146 2975 21 0 0 chr4 73643761 73644098 -81986022 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1146 6311 106 16 8 chr4 73644120 73645185 -81984935 - MusHAL1 LINE L1 -1554 1158 85 1 1146 1382 269 48 87 chr4 73645189 73645764 -81984356 + RMER19C LTR ERVK 137 737 0 1 1146 25 0 0 0 chr4 73645794 73645819 -81984301 + AT_rich Low_complexity Low_complexity 1 25 0 1 1146 1400 268 67 21 chr4 73645819 73646139 -81983981 + Lx9 LINE L1 6466 6811 -833 1 1146 1160 83 0 0 chr4 73646139 73646284 -81983836 + B1_Mus1 SINE Alu 2 146 -2 1 1146 1400 268 67 21 chr4 73646284 73646428 -81983692 + Lx9 LINE L1 6812 6951 -693 1 1146 462 344 18 0 chr4 73647491 73647654 -81982466 + ORR1E LTR MaLR 8 173 -186 1 1146 23 68 0 0 chr4 73647711 73647755 -81982365 + AT_rich Low_complexity Low_complexity 1 44 0 1 1146 22 0 0 0 chr4 73647880 73647902 -81982218 + AT_rich Low_complexity Low_complexity 1 22 0 1 1146 447 296 31 53 chr4 73648014 73648239 -81981881 + Lx8 LINE L1 7249 7468 -5 1 1146 1087 236 55 19 chr4 73648502 73648809 -81981311 + Lx7 LINE L1 6852 7169 -527 1 1146 238 175 9 9 chr4 73648890 73648948 -81981172 + MTE2a LTR MaLR 13 70 -349 1 1146 900 235 118 39 chr4 73648985 73649336 -81980784 + RMER4B LTR ERVK 79 585 0 1 1146 613 38 209 0 chr4 73649386 73649491 -81980629 + L1_Mus3 LINE L1 6504 6630 -8 1 1146 384 77 0 0 chr4 73649507 73649559 -81980561 + (GGAGA)n Simple_repeat Simple_repeat 5 56 0 1 1146 1380 62 0 0 chr4 73649559 73649738 -81980382 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 1 1146 255 231 0 0 chr4 73649739 73649791 -81980329 + ORR1E LTR MaLR 177 228 -191 1 1146 417 39 0 0 chr4 73649791 73649842 -81980278 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1146 265 252 59 30 chr4 73649845 73649980 -81980140 - Lx9 LINE L1 -190 7454 7316 1 1146 1518 194 43 103 chr4 73649980 73650376 -81979744 - RLTR18B LTR ERVK -138 374 3 1 1146 432 286 8 0 chr4 73650382 73650501 -81979619 - Lx9 LINE L1 -880 6764 6645 1 1146 297 274 0 97 chr4 73650501 73650513 -81979607 + MT2B LTR ERVL 155 157 -444 1 1146 673 238 0 15 chr4 73650513 73650645 -81979475 + B1_Mm SINE Alu 3 132 -15 1 1146 418 295 58 40 chr4 73650645 73650818 -81979302 - Lx9 LINE L1 -1018 6626 6451 1 1146 1665 198 117 22 chr4 73650838 73651318 -81978802 + RMER19C LTR ERVK 171 688 -214 1 1146 244 295 0 0 chr4 73651319 73651380 -81978740 - Lx9 LINE L1 -1189 6455 6395 1 1146 247 250 0 0 chr4 73651388 73651436 -81978684 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1146 1515 249 35 22 chr4 73651636 73652179 -81977941 - Lx9 LINE L1 -1681 5963 5381 1 1146 272 286 36 194 chr4 73652360 73652499 -81977621 - PB1D7 SINE Alu -1 119 3 1 1146 632 164 16 0 chr4 73653778 73653906 -81976214 + CT-rich Low_complexity Low_complexity 2 131 0 1 1146 405 0 0 0 chr4 73653957 73654002 -81976118 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1146 323 360 70 28 chr4 73654012 73654155 -81975965 - RSINE1 SINE B4 -15 150 2 1 1146 938 211 183 31 chr4 73654364 73654687 -81975433 + ORR1D1 LTR MaLR 3 374 0 1 1146 472 229 4 2 chr4 73654690 73654795 -81975325 + ORR1D1-int LTR MaLR 4 110 -1148 1 1146 3873 49 6 2 chr4 73654795 73655304 -81974816 - L1Md_F3 LINE L1 -443 6141 5631 1 1146 2210 51 11 0 chr4 73655304 73655577 -81974543 + L1Md_F2 LINE L1 6307 6582 0 1 1146 5017 214 69 51 chr4 73655600 73656123 -81973997 + ORR1D1-int LTR MaLR 93 613 -757 1 1146 486 0 0 0 chr4 73656123 73656177 -81973943 + (TAA)n Simple_repeat Simple_repeat 2 55 0 1 1146 5017 214 69 51 chr4 73656177 73656904 -81973216 + ORR1D1-int LTR MaLR 614 1364 -6 1 1146 1106 233 127 41 chr4 73656911 73656998 -81973122 + ORR1D1 LTR MaLR 1 82 -292 1 1146 1569 196 107 18 chr4 73656998 73657383 -81972737 - MTC LTR MaLR -2 419 1 1 1146 1106 233 127 41 chr4 73657383 73657635 -81972485 + ORR1D1 LTR MaLR 83 369 -5 1 1146 246 242 59 29 chr4 73657813 73657881 -81972239 + ORR1C2 LTR MaLR 1 70 -314 1 1146 268 42 83 0 chr4 73657894 73657942 -81972178 + (TCTCTG)n Simple_repeat Simple_repeat 1 52 0 1 1146 878 167 52 31 chr4 73657942 73658134 -81971986 + ORR1C2 LTR MaLR 189 384 0 1 1146 315 0 0 0 chr4 73658150 73658185 -81971935 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1146 317 250 54 0 chr4 73658190 73658282 -81971838 - PB1D10 SINE Alu 0 117 21 1 1146 28 0 0 0 chr4 73658904 73658932 -81971188 + AT_rich Low_complexity Low_complexity 1 28 0 1 1146 989 315 77 39 chr4 73660976 73661884 -81968236 - Lx9 LINE L1 -5 7639 6660 1 1146 1835 211 72 5 chr4 73661884 73662275 -81967845 + MTD LTR MaLR 1 417 -2 1 143 630 303 139 19 chr4 73662301 73662567 -81967553 - Lx9 LINE L1 -982 6662 6365 1 1147 450 0 0 0 chr4 73662571 73662621 -81967499 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1147 1379 251 42 12 chr4 73662709 73663196 -81966924 - Lx9 LINE L1 -1542 6102 5561 1 1147 1314 231 80 40 chr4 73663220 73663748 -81966372 - Lx9 LINE L1 -758 5089 4541 1 1147 1034 103 7 14 chr4 73663887 73664034 -81966086 - B1_Mus1 SINE Alu -1 147 2 1 1147 1028 217 88 40 chr4 73664037 73664459 -81965661 - Lx9 LINE L1 -3639 2208 1767 1 1147 533 254 0 0 chr4 73664459 73664577 -81965543 + PB1D9 SINE Alu 1 118 -2 1 1147 651 130 0 24 chr4 73664607 73664733 -81965387 + GA-rich Low_complexity Low_complexity 3 125 0 1 1147 910 206 64 14 chr4 73664733 73665029 -81965091 - Lx9 LINE L1 -4065 1782 1472 1 1147 542 201 163 35 chr4 73665030 73665199 -81964921 + MTC LTR MaLR 2 184 -216 1 1147 235 300 0 0 chr4 73665939 73665999 -81964121 - MIR SINE MIR -112 150 91 1 1147 1654 235 128 47 chr4 73667032 73667546 -81962574 - RMER4B LTR ERVK -13 572 17 1 1147 2187 180 21 8 chr4 73667626 73668007 -81962113 - ORR1B1 LTR MaLR -8 386 1 1 1147 207 0 0 0 chr4 73668507 73668530 -81961590 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1147 181 285 161 8 chr4 73669450 73669574 -81960546 - L2c LINE L2 -49 3338 3196 1 1147 3524 68 0 0 chr4 73669679 73670120 -81960000 - L1_Mus1 LINE L1 0 6567 6127 1 1147 620 31 0 68 chr4 73670296 73670399 -81959721 - L1_Mus3 LINE L1 -5 6633 6538 2 1147 6470 96 19 0 chr4 73670536 73671779 -81958341 - L1_Mus3 LINE L1 -109 6529 5264 2 1147 5658 124 18 5 chr4 73671786 73672725 -81957395 + L1_Mus3 LINE L1 4305 5255 -628 2 1147 501 260 55 0 chr4 73673828 73673955 -81956165 - RMER15 LTR ERVL -20 555 422 2 1147 236 30 0 29 chr4 73675716 73675750 -81954370 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1147 825 282 10 5 chr4 73675761 73675957 -81954163 - B3 SINE B2 0 216 20 2 1147 319 342 72 53 chr4 73676211 73676418 -81953702 - MIRb SINE MIR -21 247 37 2 1147 569 298 86 0 chr4 73677095 73677246 -81952874 - RSINE1 SINE B4 0 165 2 2 1147 2173 281 78 18 chr4 73677326 73678151 -81951969 + Lx7 LINE L1 6487 7360 -336 2 1147 21 36 0 0 chr4 73678191 73678219 -81951901 + AT_rich Low_complexity Low_complexity 1 28 0 2 1147 1043 99 0 0 chr4 73678243 73678385 -81951735 + B1_Mus1 SINE Alu 2 143 -5 2 1147 309 26 0 0 chr4 73678388 73678426 -81951694 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1147 310 270 77 116 chr4 73678897 73679052 -81951068 + B3A SINE B2 50 198 0 2 1147 264 158 26 13 chr4 73679247 73679324 -81950796 + GA-rich Low_complexity Low_complexity 4 81 0 2 1147 195 42 0 0 chr4 73679660 73679684 -81950436 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1147 399 73 0 0 chr4 73679890 73679945 -81950175 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1147 1254 269 84 54 chr4 73681535 73681927 -81948193 + MTD LTR MaLR 1 404 -15 2 1147 328 121 55 0 chr4 73682053 73682144 -81947976 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 2 1147 1255 209 65 102 chr4 73682155 73682574 -81947546 - MT2A LTR ERVL -61 540 1 2 1147 316 199 103 0 chr4 73683057 73683203 -81946917 + Lx9 LINE L1 7477 7637 -7 2 1147 440 295 46 15 chr4 73683231 73683362 -81946758 + B1_Mur1 SINE Alu 2 136 -13 2 1147 234 0 0 0 chr4 73683362 73683388 -81946732 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1147 206 81 27 0 chr4 73683694 73683731 -81946389 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1147 7853 106 14 8 chr4 73684601 73686650 -81943470 + L1VL4 LINE L1 29 2089 -1470 2 1147 6495 97 52 1 chr4 73686651 73687906 -81942214 + L1_Mus4 LINE L1 5315 6634 -2 2 1147 405 0 0 0 chr4 73688311 73688356 -81941764 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1147 361 305 82 33 chr4 73688403 73688525 -81941595 - B1F2 SINE Alu -12 137 10 2 1147 276 299 89 93 chr4 73689939 73690263 -81939857 - LTR37B LTR ERV1 -36 432 110 2 1147 37 39 0 0 chr4 73691313 73691364 -81938756 + AT_rich Low_complexity Low_complexity 1 51 0 2 1147 708 251 113 0 chr4 73691568 73691763 -81938357 + Lx7 LINE L1 7135 7351 -345 2 1147 380 190 20 0 chr4 73691847 73691863 -81938257 + polypyrimidine Low_complexity Low_complexity 88 103 0 2 1147 943 121 23 0 chr4 73691863 73692037 -81938083 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1147 380 190 20 0 chr4 73692037 73692120 -81938000 + CT-rich Low_complexity Low_complexity 3 87 0 2 1147 1759 70 8 16 chr4 73692820 73693068 -81937052 + L1Md_F2 LINE L1 5341 5586 -297 2 1147 7663 43 33 0 chr4 73693069 73694020 -81936100 + L1Md_F2 LINE L1 5588 6569 -13 2 1147 549 325 38 0 chr4 73696027 73696184 -81933936 - RSINE1 SINE B4 -2 163 1 2 1147 1637 253 34 3 chr4 73696440 73696821 -81933299 + MTD LTR MaLR 1 393 -26 2 1147 189 0 0 0 chr4 73697211 73697232 -81932888 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1147 3712 52 21 4 chr4 73698454 73698921 -81931199 - L1Md_F2 LINE L1 -10 6572 6098 2 1147 198 71 0 0 chr4 73699702 73699730 -81930390 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1147 33784 36 0 0 chr4 73699891 73705321 -81924799 + L1Md_T LINE L1 63 5589 -297 2 1147 8917 11 0 0 chr4 73705321 73706317 -81923803 + L1Md_T LINE L1 5590 6585 0 2 1147 522 0 0 0 chr4 73706378 73706436 -81923684 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1147 607 213 63 0 chr4 73707193 73707320 -81922800 + B1_Mur3 SINE Alu 2 136 -13 2 1147 261 98 0 0 chr4 73707325 73707366 -81922754 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1147 476 294 78 112 chr4 73707495 73707969 -81922151 - RLTR40 LTR ERVK -243 574 117 2 1147 259 355 73 101 chr4 73708510 73708729 -81921391 - MLT1L LTR MaLR -394 216 4 2 1147 345 314 36 36 chr4 73709596 73709735 -81920385 - MIRc SINE MIR -72 196 58 2 1147 274 267 16 20 chr4 73709986 73710080 -81920040 - PB1D9 SINE Alu -21 96 4 2 1147 234 267 27 189 chr4 73710143 73710254 -81919866 - B1F SINE Alu -2 147 55 2 1147 358 109 18 0 chr4 73710257 73710312 -81919808 + RMER6C LTR ERVK 1 56 -664 2 1147 1434 191 165 27 chr4 73710352 73710902 -81919218 + RMER6C LTR ERVK 208 707 -13 2 1147 1422 249 133 47 chr4 73711468 73711763 -81918357 + RMER1C Other Other 705 908 -434 2 1147 3484 98 16 4 chr4 73711763 73712264 -81917856 - Lx LINE L1 -6 6648 6142 2 1147 1422 217 139 66 chr4 73712264 73712529 -81917591 + RMER1C Other Other 909 1207 -135 2 1147 26 0 0 0 chr4 73712529 73712555 -81917565 + AT_rich Low_complexity Low_complexity 1 26 0 2 1147 287 284 0 18 chr4 73712923 73713034 -81917086 + RMER1C Other Other 1233 1341 -1 2 1147 916 75 103 0 chr4 73713505 73713651 -81916469 + L1_Mus3 LINE L1 6478 6638 0 2 1147 754 93 9 0 chr4 73713901 73714009 -81916111 - B1_Mus2 SINE Alu 0 147 39 2 1147 303 215 40 61 chr4 73713922 73714021 -81916099 - RLTR25B LTR ERVK -507 521 425 2 1147 426 282 20 20 chr4 73714032 73714184 -81915936 - Lx9 LINE L1 -1655 5989 5838 2 1147 784 249 161 18 chr4 73714197 73714260 -81915860 - L1_Rod LINE L1 -1800 4047 3980 2 1147 3801 193 32 109 chr4 73714260 73715238 -81914882 - RMER19B LTR ERVK 0 902 1 2 1147 784 249 161 18 chr4 73715238 73715509 -81914611 - L1_Rod LINE L1 -1868 3979 3666 2 1147 832 74 22 43 chr4 73715593 73715777 -81914343 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1147 239 222 0 0 chr4 73715784 73715829 -81914291 + CT-rich Low_complexity Low_complexity 3 47 0 2 1147 1172 231 85 17 chr4 73715856 73716266 -81913854 - L1_Rod LINE L1 -2296 3551 3114 2 1147 9607 106 36 2 chr4 73716257 73718452 -81911668 - L1_Mus3 LINE L1 -6 6632 4364 2 1147 25 0 0 0 chr4 73718452 73718477 -81911643 + AT_rich Low_complexity Low_complexity 1 25 0 2 1147 394 353 35 64 chr4 73718477 73718506 -81911614 - B3 SINE B2 -3 213 183 2 1147 287 49 24 0 chr4 73718506 73718547 -81911573 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1147 394 353 35 64 chr4 73718547 73718720 -81911400 - B3 SINE B2 -34 182 17 2 1147 539 305 30 12 chr4 73719332 73719501 -81910619 + ORR1E LTR MaLR 4 175 -184 2 1147 509 275 31 30 chr4 73719537 73719755 -81910365 + ORR1E LTR MaLR 132 375 -4 2 1147 220 213 0 21 chr4 73720970 73721018 -81909102 + CT-rich Low_complexity Low_complexity 1 47 0 2 1147 231 360 16 30 chr4 73721602 73721725 -81908395 - B1F2 SINE Alu 0 120 2 2 1147 183 346 24 24 chr4 73721837 73721920 -81908200 + MIRb SINE MIR 30 112 -156 2 1147 21 57 0 0 chr4 73721966 73722001 -81908119 + AT_rich Low_complexity Low_complexity 1 35 0 2 1147 773 310 0 10 chr4 73723030 73723229 -81906891 + B3A SINE B2 1 197 -1 2 1147 180 161 0 0 chr4 73723686 73723717 -81906403 - L3 LINE CR1 -3404 1085 1055 2 1147 413 323 24 8 chr4 73724140 73724265 -81905855 - B3 SINE B2 -6 210 84 2 1147 11976 97 3 1 chr4 73724267 73726277 -81903843 + L1_Mus1 LINE L1 4178 6192 -375 2 1147 5304 45 1 0 chr4 73726277 73726926 -81903194 + RLTR13C2 LTR ERVK 1 650 -158 2 1147 3154 52 3 0 chr4 73726980 73727368 -81902752 - L1Md_F2 LINE L1 -12 6570 6182 2 1147 711 224 6 0 chr4 73727368 73727524 -81902596 + L1VL1 LINE L1 170 326 -6096 2 1147 1160 95 18 12 chr4 73727532 73727672 -81902448 + RLTR13C2 LTR ERVK 638 808 0 2 1147 327 252 84 78 chr4 73727672 73727702 -81902418 - B3A SINE B2 -55 143 110 2 1147 3027 58 3 0 chr4 73727702 73728082 -81902038 + L1_Mus1 LINE L1 6187 6567 0 2 1147 349 236 50 40 chr4 73728082 73728193 -81901927 - B3 SINE B2 -89 109 1 2 1147 265 287 69 69 chr4 73728354 73728485 -81901635 + MER58B DNA MER1_type 179 309 -32 2 1147 1543 261 42 10 chr4 73729988 73730394 -81899726 - MTD LTR MaLR 0 419 1 2 1147 456 289 147 32 chr4 73731460 73731807 -81898313 - MER119 DNA MER1_type 0 583 197 2 1147 1194 95 2 1 chr4 73732117 73732285 -81897835 + Lx LINE L1 5646 5817 -495 2 1147 974 184 53 16 chr4 73732286 73732474 -81897646 + L1VL2 LINE L1 179 373 -5962 2 1147 15082 141 26 20 chr4 73732479 73735929 -81894191 + Lx LINE L1 3176 6645 -9 2 1147 191 160 37 74 chr4 73736990 73737044 -81893076 - L4 LINE RTE -1855 174 123 2 1147 1089 43 0 0 chr4 73737237 73737376 -81892744 + (TC)n Simple_repeat Simple_repeat 1 139 0 2 1147 364 311 31 56 chr4 73737596 73737756 -81892364 - RLTR14 LTR ERV1 -3 379 224 2 1147 1169 274 97 43 chr4 73738118 73738560 -81891560 - RMER5 LTR ERV1 -66 468 3 2 1147 777 162 44 7 chr4 73738569 73738706 -81891414 - RMER5 LTR ERV1 0 534 393 2 1147 682 153 48 8 chr4 73739284 73739409 -81890711 - B1_Mur4 SINE Alu -20 130 1 2 1147 1093 236 49 84 chr4 73739425 73739831 -81890289 - RLTR42-int LTR ERVK -878 4644 4253 2 1147 205 29 59 0 chr4 73739957 73739991 -81890129 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1147 298 333 36 0 chr4 73740677 73740788 -81889332 - RMER15 LTR ERVL -56 519 405 2 1147 1112 73 0 0 chr4 73740896 73741033 -81889087 - B1_Mm SINE Alu -10 137 1 2 1147 1095 269 27 24 chr4 73741310 73741603 -81888517 + Lx6 LINE L1 7141 7434 -26 2 1147 182 91 0 29 chr4 73741686 73741720 -81888400 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1147 342 0 0 0 chr4 73741847 73741885 -81888235 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1147 528 244 45 13 chr4 73742217 73742371 -81887749 - RLTR42-int LTR ERVK -4200 1322 1164 2 1147 1630 183 25 34 chr4 73743648 73743970 -81886150 - RMER5 LTR ERV1 -215 319 1 2 1147 411 21 0 0 chr4 73744674 73744722 -81885398 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1147 1365 250 106 31 chr4 73744798 73744918 -81885202 + MTD LTR MaLR 3 136 -283 2 1147 241 47 0 44 chr4 73744918 73744963 -81885157 + (ATG)n Simple_repeat Simple_repeat 3 45 0 2 1147 1365 250 106 31 chr4 73744963 73745230 -81884890 + MTD LTR MaLR 137 419 0 2 1147 1718 289 52 43 chr4 73745315 73746164 -81883956 + MTC-int LTR MaLR 54 813 -445 3 1147 6779 171 53 10 chr4 73746164 73746650 -81883470 - L1_Mur3 LINE L1 -1112 4768 4286 3 1147 180 0 0 0 chr4 73746650 73746670 -81883450 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1147 6779 171 53 10 chr4 73746670 73747566 -81882554 - L1_Mur3 LINE L1 -1595 4285 3327 3 1147 195 42 0 0 chr4 73747568 73747592 -81882528 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1147 275 215 38 0 chr4 73747592 73747671 -81882449 - Lx4B LINE L1 -21 7037 6956 3 1147 4410 188 49 8 chr4 73747673 73747814 -81882306 - L1_Mur2 LINE L1 -3681 2205 2050 3 1147 369 0 0 0 chr4 73747814 73747855 -81882265 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1147 4410 188 57 10 chr4 73747855 73748955 -81881165 - L1_Mur2 LINE L1 -3837 2049 833 3 1147 6180 183 26 49 chr4 73749309 73750790 -81879330 - L1_Mur3 LINE L1 -2542 3338 1891 3 1147 306 315 53 27 chr4 73750805 73750955 -81879165 - Lx5 LINE L1 -1 7049 6896 3 1147 8243 173 68 43 chr4 73751047 73753035 -81877085 - Lx3_Mus LINE L1 -1 7008 4835 3 1147 3532 55 59 0 chr4 73753035 73753490 -81876630 - L1Md_F2 LINE L1 -12 6570 6089 3 1147 3285 264 183 56 chr4 73753490 73754746 -81875374 - Lx3_Mus LINE L1 -1013 4834 3478 3 1147 27 29 0 0 chr4 73754868 73754902 -81875218 + AT_rich Low_complexity Low_complexity 1 34 0 3 1147 2865 220 78 25 chr4 73754961 73756107 -81874013 - Lx9 LINE L1 0 7644 6350 3 1147 294 29 0 0 chr4 73756107 73756142 -81873978 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1147 1637 270 29 53 chr4 73756142 73757033 -81873087 - Lx9 LINE L1 -1266 6207 5347 3 1147 1063 236 138 18 chr4 73757717 73758058 -81872062 + RMER19A LTR ERVK 1 382 -355 3 1147 1226 236 55 0 chr4 73758061 73758404 -81871716 + L1_Mur3 LINE L1 1474 1835 -4045 3 1147 2821 245 62 53 chr4 73758579 73759075 -81871045 - Lx9 LINE L1 -1668 5976 5437 3 1147 239 54 27 0 chr4 73759075 73759112 -81871008 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1147 2821 237 57 61 chr4 73759112 73759750 -81870370 - Lx9 LINE L1 -411 5436 4811 3 1147 1020 283 38 25 chr4 73759760 73760249 -81869871 - Lx9 LINE L1 -1580 4566 4017 3 1147 369 0 0 0 chr4 73760556 73760597 -81869523 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1147 21 0 0 0 chr4 73761449 73761470 -81868650 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 24 67 0 0 chr4 73761630 73761675 -81868445 + AT_rich Low_complexity Low_complexity 1 45 0 3 1147 9414 58 4 1 chr4 73762105 73764012 -81866108 - L1Md_F3 LINE L1 0 6584 4672 3 1147 624 313 59 29 chr4 73764140 73764413 -81865707 - B4A SINE B4 -2 290 10 3 1147 418 284 29 80 chr4 73764438 73764576 -81865544 - B1F2 SINE Alu -1 148 18 3 1147 366 114 0 0 chr4 73764706 73764776 -81865344 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1147 30 45 0 0 chr4 73764822 73764866 -81865254 + AT_rich Low_complexity Low_complexity 1 44 0 3 1147 458 320 8 0 chr4 73764876 73765004 -81865116 - RSINE1 SINE B4 -34 131 3 3 1147 912 19 0 0 chr4 73766216 73766322 -81863798 + (TC)n Simple_repeat Simple_repeat 1 106 0 3 1147 288 172 0 0 chr4 73766562 73766620 -81863500 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 3 1147 320 337 42 26 chr4 73766731 73766920 -81863200 - L1MB7 LINE L1 -82 6102 5911 3 1147 22 35 0 0 chr4 73766966 73766995 -81863125 + AT_rich Low_complexity Low_complexity 1 29 0 3 1147 282 116 0 0 chr4 73767123 73767166 -81862954 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1147 1171 82 94 0 chr4 73767256 73767426 -81862694 + B2_Mm1a SINE B2 2 187 -6 3 1147 2099 50 0 0 chr4 73767427 73767688 -81862432 - L1_Mus2 LINE L1 -568 5998 5738 3 1147 4290 60 5 14 chr4 73767688 73768248 -81861872 + L1_Mus2 LINE L1 6012 6566 0 3 1147 336 103 0 0 chr4 73768311 73768369 -81861751 + (CATA)n Simple_repeat Simple_repeat 2 59 0 3 1147 712 229 69 20 chr4 73768636 73768881 -81861239 - Lx9 LINE L1 -8 7636 7380 3 1147 28 29 0 0 chr4 73768950 73768985 -81861135 + AT_rich Low_complexity Low_complexity 1 35 0 3 1147 449 276 26 0 chr4 73768995 73769147 -81860973 - L1MB7 LINE L1 -349 5835 5680 3 1147 2167 317 96 25 chr4 73769228 73771157 -81858963 - Lx8 LINE L1 0 7473 5365 3 1147 208 231 0 0 chr4 73771160 73771199 -81858921 - MER5B DNA MER1_type -133 45 7 3 1147 1243 93 10 40 chr4 73771224 73771426 -81858694 + L1_Mus3 LINE L1 6419 6614 -24 3 1147 1407 45 0 0 chr4 73771431 73771633 -81858487 + (GAAA)n Simple_repeat Simple_repeat 1 202 0 3 1147 919 155 11 0 chr4 73771633 73771807 -81858313 + GA-rich Low_complexity Low_complexity 1 176 0 3 1147 525 0 0 66 chr4 73771791 73771882 -81858238 + (GGAGA)n Simple_repeat Simple_repeat 2 86 0 3 1147 1326 78 0 0 chr4 73771883 73772063 -81858057 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1147 249 33 0 0 chr4 73772063 73772093 -81858027 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 3 1147 383 286 102 48 chr4 73772551 73772587 -81857533 - MLT2B1 LTR ERVL -2 554 519 3 1147 297 118 0 0 chr4 73772587 73772638 -81857482 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1147 243 88 0 0 chr4 73772638 73772671 -81857449 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1147 383 286 102 48 chr4 73772671 73772820 -81857300 - MLT2B1 LTR ERVL -38 518 359 3 1147 483 370 23 5 chr4 73772854 73773071 -81857049 - MLT2B1 LTR ERVL -296 224 4 3 1147 188 32 97 0 chr4 73773330 73773361 -81856759 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1147 357 194 164 10 chr4 73774852 73774956 -81855164 + Lx5 LINE L1 6919 7038 -12 3 1147 240 35 0 0 chr4 73774957 73774986 -81855134 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 3 1147 2370 244 218 44 chr4 73774986 73775044 -81855076 - MTD-int LTR MaLR -157 1101 1032 3 1147 1368 67 0 0 chr4 73775044 73775223 -81854897 + L1Md_F2 LINE L1 6387 6565 -17 3 1147 2370 244 218 44 chr4 73775223 73776102 -81854018 - MTD-int LTR MaLR -227 1031 1 3 1147 1341 262 90 20 chr4 73776100 73776490 -81853630 - MTD LTR MaLR -2 417 1 3 1147 318 293 118 14 chr4 73777302 73777513 -81852607 - L1M5 LINE L1 -791 5355 5123 3 1147 914 321 68 21 chr4 73777531 73778059 -81852061 - Lx7 LINE L1 -1291 6405 5853 3 1147 6209 86 41 12 chr4 73778078 73778976 -81851144 - L1_Mus4 LINE L1 0 6636 5713 3 1147 5193 168 33 12 chr4 73778970 73780013 -81850107 + L1_Mur3 LINE L1 3667 4730 -1150 3 1147 300 321 12 0 chr4 73780025 73780106 -81850014 + MER70B LTR ERVL 300 381 -197 3 1147 396 42 0 12 chr4 73780231 73780296 -81849824 + B1_Mus2 SINE Alu 89 149 0 3 1147 445 291 0 22 chr4 73780316 73780499 -81849621 + L1_Mur3 LINE L1 5162 5340 -540 3 1147 578 251 20 44 chr4 73780578 73780782 -81849338 + L1_Mur3 LINE L1 5365 5563 -317 3 1147 339 25 0 0 chr4 73780864 73780904 -81849216 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1147 21 0 0 0 chr4 73780956 73780977 -81849143 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 288 0 0 0 chr4 73781007 73781039 -81849081 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1147 1216 14 0 0 chr4 73781039 73781178 -81848942 - B1_Mus2 SINE Alu -8 139 1 3 1147 245 300 0 0 chr4 73781213 73781293 -81848827 - L1MA8 LINE L1 -198 6093 6014 3 1147 345 306 37 31 chr4 73782322 73782484 -81847636 - MIR SINE MIR -3 259 97 3 1147 405 0 0 0 chr4 73782693 73782738 -81847382 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1147 974 319 62 22 chr4 73783538 73783894 -81846226 + ORR1D2 LTR MaLR 1 370 0 3 1147 7201 95 15 6 chr4 73783989 73785138 -81844982 + L1_Mus3 LINE L1 5460 6618 -20 3 1147 372 43 0 0 chr4 73785139 73785185 -81844935 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1147 1179 63 0 33 chr4 73785186 73785367 -81844753 + (GGAAA)n Simple_repeat Simple_repeat 4 178 0 3 1147 704 0 39 119 chr4 73785367 73785595 -81844525 + GA-rich Low_complexity Low_complexity 1 209 0 3 1147 1136 28 0 68 chr4 73785595 73785787 -81844333 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 3 1147 704 0 15 142 chr4 73785787 73785799 -81844321 + polypurine Low_complexity Low_complexity 169 180 0 3 1147 184 0 167 0 chr4 73785799 73785835 -81844285 + GA-rich Low_complexity Low_complexity 4 45 0 3 1147 10182 129 17 38 chr4 73785850 73788397 -81841723 - L1VL2 LINE L1 -1126 2489 7 3 1147 681 246 50 8 chr4 73788397 73788690 -81841430 - L1VL2 LINE L1 -5923 412 1 3 1147 1125 192 10 0 chr4 73788690 73788893 -81841227 - MTC LTR MaLR -210 211 7 3 1147 22 0 0 0 chr4 73788920 73788942 -81841178 + AT_rich Low_complexity Low_complexity 1 22 0 3 1147 344 343 19 38 chr4 73789261 73789522 -81840598 - L1M5 LINE L1 -744 5402 5147 3 1147 218 29 0 56 chr4 73789880 73789916 -81840204 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 1147 311 0 26 0 chr4 73789916 73789955 -81840165 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1147 396 0 0 0 chr4 73789955 73789998 -81840122 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1147 588 304 137 41 chr4 73790003 73790280 -81839840 - B4A SINE B4 0 292 12 3 1147 21 0 0 0 chr4 73790636 73790657 -81839463 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 2501 79 3 9 chr4 73791341 73791357 -81838763 - L1_Mus2 LINE L1 -637 5929 5916 3 1147 2210 44 0 14 chr4 73791357 73791636 -81838484 - L1Md_F3 LINE L1 -14 6570 6296 3 1147 3070 58 0 1 chr4 73791636 73792044 -81838076 - L1_Mus2 LINE L1 -651 5915 5507 3 1147 251 324 102 42 chr4 73792371 73792785 -81837335 + L1_Mur3 LINE L1 843 1286 -6442 3 1147 693 36 0 0 chr4 73792785 73792869 -81837251 + (GAGAA)n Simple_repeat Simple_repeat 4 87 0 3 1147 2157 228 53 133 chr4 73792869 73793289 -81836831 + L1_Mur3 LINE L1 1287 1714 -4166 3 1147 216 0 0 0 chr4 73793289 73793313 -81836807 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 3 1147 1199 124 21 0 chr4 73793323 73793509 -81836611 + B2_Mm2 SINE B2 1 190 -5 3 143 666 68 0 0 chr4 73793513 73793601 -81836519 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 3 1148 2157 227 53 134 chr4 73793601 73794158 -81835962 + L1_Mur3 LINE L1 1717 2198 -3682 3 1148 4143 198 40 19 chr4 73794158 73795111 -81835009 - RLTR25A LTR ERVK 0 1028 1 3 1148 1271 106 5 16 chr4 73795768 73795960 -81834160 - B2_Mm1t SINE B2 -3 190 1 3 1148 420 20 0 0 chr4 73796047 73796096 -81834024 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1148 563 242 14 127 chr4 73796104 73796379 -81833741 + L1_Mur3 LINE L1 2413 2656 -3224 3 1148 226 246 118 0 chr4 73796480 73796590 -81833530 + L1_Mur3 LINE L1 2837 2959 -2921 3 1148 4231 249 62 7 chr4 73796596 73797735 -81832385 - Lx9 LINE L1 0 7644 6444 3 1148 532 40 27 0 chr4 73797916 73797991 -81832129 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1148 249 57 0 0 chr4 73797997 73798032 -81832088 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1148 446 276 0 24 chr4 73798056 73798182 -81831938 - B4A SINE B4 -4 288 166 3 1148 493 0 0 0 chr4 73798269 73798332 -81831788 - L1Md_A LINE L1 0 6582 6520 3 1148 236 325 58 46 chr4 73798347 73798434 -81831686 - B4A SINE B4 -197 95 8 3 1148 600 322 31 74 chr4 73799709 73799924 -81830196 + MTD LTR MaLR 1 206 -213 3 1148 1290 91 11 0 chr4 73799924 73800099 -81830021 + B2_Mm1t SINE B2 3 179 -14 3 1148 600 322 31 74 chr4 73800099 73800141 -81829979 + MTD LTR MaLR 207 247 -172 3 1148 361 105 305 42 chr4 73800131 73800249 -81829871 + B2_Mm2 SINE B2 47 195 0 4 1148 289 221 88 0 chr4 73800256 73800324 -81829796 + MTD LTR MaLR 199 272 -147 3 1148 2464 260 138 130 chr4 73800356 73801422 -81828698 + MTC-int LTR MaLR 21 1094 -4 4 1148 1318 279 29 66 chr4 73801435 73801846 -81828274 + MTD LTR MaLR 10 405 -14 4 1148 853 292 53 40 chr4 73801848 73802169 -81827951 + MTD LTR MaLR 81 405 -14 4 1148 3053 242 32 60 chr4 73802241 73802291 -81827829 + L1_Rod LINE L1 3523 3562 -2285 4 1148 733 128 16 0 chr4 73802291 73802416 -81827704 - Lx LINE L1 0 6654 6528 4 1148 3053 242 32 60 chr4 73802416 73802528 -81827592 + L1_Rod LINE L1 3563 3671 -2176 4 1148 342 0 0 0 chr4 73802528 73802566 -81827554 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1148 3053 242 32 60 chr4 73802566 73803537 -81826583 + L1_Rod LINE L1 3672 4625 -1222 4 1148 184 304 0 0 chr4 73803725 73803771 -81826349 + MIRm SINE MIR 110 155 -121 4 1148 24 0 0 0 chr4 73804504 73804528 -81825592 + AT_rich Low_complexity Low_complexity 1 24 0 4 1148 195 45 0 83 chr4 73805074 73805122 -81824998 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1148 562 276 223 18 chr4 73805901 73806130 -81823990 + B4A SINE B4 1 276 -16 4 1148 294 283 62 12 chr4 73806517 73806678 -81823442 + L1_Mur3 LINE L1 5182 5350 -530 4 1148 1645 288 31 18 chr4 73806675 73807253 -81822867 - Lx6 LINE L1 -2 7458 6495 4 1148 1148 36 0 0 chr4 73808096 73808234 -81821886 - L1Md_F2 LINE L1 -390 5493 5356 4 1148 737 43 0 21 chr4 73808222 73808318 -81821802 + L1Md_F2 LINE L1 5493 5586 -297 4 1148 7606 50 36 3 chr4 73808319 73809280 -81820840 + L1Md_F2 LINE L1 5588 6580 -2 4 1148 189 0 0 0 chr4 73809327 73809348 -81820772 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1148 246 217 66 16 chr4 73810216 73810277 -81819843 - PB1D10 SINE Alu -5 112 49 4 1148 459 0 0 0 chr4 73810525 73810576 -81819544 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1148 321 172 0 0 chr4 73811464 73811528 -81818592 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1148 314 342 25 8 chr4 73812012 73812133 -81817987 + MIRc SINE MIR 53 175 -93 4 1148 229 322 11 0 chr4 73813478 73813565 -81816555 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 4 1148 257 266 16 0 chr4 73813479 73813543 -81816577 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1148 318 305 21 137 chr4 73813610 73813800 -81816320 - Lx9 LINE L1 -1105 6539 6372 4 1148 343 256 0 0 chr4 73814100 73814178 -81815942 - MLT1A0 LTR MaLR -6 359 282 4 1148 565 281 56 11 chr4 73814178 73814358 -81815762 - MLT1A0 LTR MaLR -27 338 151 4 1148 449 296 33 52 chr4 73814398 73814551 -81815569 - RSINE1 SINE B4 -13 152 3 4 1148 282 212 102 34 chr4 73814564 73814652 -81815468 - MLT1A0 LTR MaLR -222 143 50 4 1148 210 136 0 0 chr4 73815210 73815254 -81814866 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1148 2056 178 37 3 chr4 73816760 73817143 -81812977 + Lx LINE L1 6258 6653 -1 4 1148 364 316 76 0 chr4 73817208 73817366 -81812754 - MER3 DNA MER1_type -34 175 6 4 1148 689 256 115 0 chr4 73817531 73817722 -81812398 - ID_B1 SINE B4 -9 215 3 4 1148 22 35 0 0 chr4 73818007 73818036 -81812084 + AT_rich Low_complexity Low_complexity 1 29 0 4 1148 414 0 0 0 chr4 73818958 73819004 -81811116 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1148 1851 279 21 23 chr4 73819007 73819520 -81810600 - Lx7 LINE L1 -407 7289 6778 4 1148 3559 104 10 6 chr4 73821990 73822503 -81807617 + Lx LINE L1 6139 6653 -1 4 1148 329 379 36 40 chr4 73822619 73822894 -81807226 - MER52-int LTR ERV1 -5287 1804 1531 4 1148 771 48 0 0 chr4 73824067 73824171 -81805949 + (TG)n Simple_repeat Simple_repeat 2 105 0 4 1148 1879 85 0 8 chr4 73824432 73824693 -81805427 - L1Md_F2 LINE L1 -12 6570 6312 4 1148 825 170 11 52 chr4 73824744 73824918 -81805202 + B2_Mm2 SINE B2 2 168 -27 4 1148 1037 55 7 0 chr4 73824936 73825081 -81805039 + (GA)n Simple_repeat Simple_repeat 1 146 0 4 1148 21 36 0 0 chr4 73825575 73825603 -81804517 + AT_rich Low_complexity Low_complexity 1 28 0 4 1148 375 23 0 0 chr4 73825699 73825743 -81804377 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1148 612 240 8 8 chr4 73825799 73825814 -81804306 - MTE2a LTR MaLR -5 374 360 4 1148 2197 71 3 7 chr4 73825814 73826113 -81804007 - L1_Mus2 LINE L1 0 6566 6269 4 1148 612 240 8 8 chr4 73826113 73826227 -81803893 - MTE2a LTR MaLR -20 359 245 4 1148 304 287 43 0 chr4 73827500 73827615 -81802505 - RMER30 DNA MER1_type -44 158 39 4 1148 279 336 53 9 chr4 73827624 73827738 -81802382 + Charlie12 DNA MER1_type 369 487 -2386 4 1148 346 272 49 37 chr4 73827932 73828096 -81802024 + Charlie12 DNA MER1_type 622 787 -2086 4 1148 285 29 0 0 chr4 73828122 73828156 -81801964 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4 1148 5060 98 118 67 chr4 73828156 73829143 -81800977 - L1_Mus2 LINE L1 -11 6555 5522 4 1148 252 0 0 0 chr4 73829201 73829229 -81800891 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 1148 571 315 23 18 chr4 73829267 73829487 -81800633 + Charlie12 DNA MER1_type 1398 1618 -1255 4 1148 243 287 135 4 chr4 73829508 73829760 -81800360 - L1_Mur3 LINE L1 -4337 1543 1259 4 1148 236 250 50 0 chr4 73829864 73829944 -81800176 - L1_Rod LINE L1 -6462 710 627 4 1148 2475 213 45 8 chr4 73830087 73830594 -81799526 + Lx5 LINE L1 6525 7050 0 4 1148 402 333 44 0 chr4 73830607 73830766 -81799354 + Lx8 LINE L1 6728 6893 -580 4 1148 5424 67 18 6 chr4 73831075 73831795 -81798325 + L1Md_F2 LINE L1 5852 6580 -2 4 1148 1214 34 0 7 chr4 73832206 73832354 -81797766 + B1_Mm SINE Alu 1 147 0 4 1148 24 0 0 0 chr4 73834238 73834262 -81795858 + AT_rich Low_complexity Low_complexity 1 24 0 4 1148 243 0 0 0 chr4 73834962 73834989 -81795131 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1148 699 154 6 12 chr4 73834989 73835160 -81794960 + GA-rich Low_complexity Low_complexity 2 171 0 4 1148 731 223 57 42 chr4 73835520 73835712 -81794408 - B2_Mm2 SINE B2 0 195 1 4 1148 612 311 181 54 chr4 73835776 73836201 -81793919 + MTE-int LTR MaLR 556 1034 -546 4 1148 552 264 157 25 chr4 73836214 73836411 -81793709 - B4A SINE B4 -57 235 19 4 1148 335 261 27 9 chr4 73836429 73836541 -81793579 - L1M4 LINE L1 -1004 5142 5029 4 1148 202 222 0 18 chr4 73836614 73836669 -81793451 + GA-rich Low_complexity Low_complexity 3 56 0 4 1148 1001 68 0 58 chr4 73836670 73836858 -81793262 + (GGAGA)n Simple_repeat Simple_repeat 3 179 0 4 1148 736 337 49 22 chr4 73837248 73837515 -81792605 + B4A SINE B4 19 292 0 4 1148 239 241 83 60 chr4 73837624 73837708 -81792412 - ORR1E LTR MaLR 0 359 274 4 1148 4219 259 124 120 chr4 73839408 73841035 -81789085 + Lx7 LINE L1 1073 2962 -2915 4 1148 450 0 0 0 chr4 73841044 73841094 -81789026 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1148 1220 75 0 20 chr4 73841094 73841233 -81788887 - B1_Mus1 SINE Alu -9 139 1 4 1148 4219 260 146 140 chr4 73841233 73841991 -81788129 + Lx7 LINE L1 2963 3688 -2189 4 1148 1327 229 70 53 chr4 73841991 73842178 -81787942 - ORR1D1 LTR MaLR -13 361 165 4 1148 417 20 0 0 chr4 73842178 73842228 -81787892 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1148 1327 229 70 53 chr4 73842228 73842309 -81787811 - ORR1D1 LTR MaLR -210 164 79 4 1148 1135 200 111 103 chr4 73842309 73842688 -81787432 + ORR1C2 LTR MaLR 1 382 -2 4 1148 1327 229 70 53 chr4 73842688 73842773 -81787347 - ORR1D1 LTR MaLR -296 78 2 4 1148 6398 220 131 60 chr4 73842773 73843511 -81786609 + Lx7 LINE L1 3687 4599 -1281 4 1148 1296 35 14 0 chr4 73843511 73843656 -81786464 + B1_Mus1 SINE Alu 1 147 -1 4 1148 6398 215 129 51 chr4 73843656 73844166 -81785954 + Lx7 LINE L1 4600 5129 -751 4 1148 270 0 0 0 chr4 73844166 73844196 -81785924 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1148 6398 244 84 42 chr4 73844196 73846387 -81783733 + Lx7 LINE L1 5130 7335 -361 4 1148 201 74 0 0 chr4 73846402 73846429 -81783691 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1148 219 36 0 0 chr4 73846446 73846474 -81783646 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1148 180 0 0 0 chr4 73846474 73846493 -81783627 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1148 1205 88 0 0 chr4 73846997 73847144 -81782976 + B1_Mm SINE Alu 1 147 0 4 1148 297 0 0 0 chr4 73847144 73847177 -81782943 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1148 212 381 0 58 chr4 73849048 73849151 -81780969 + BC1_Mm scRNA scRNA 1 97 -55 4 1148 407 311 12 6 chr4 73849321 73849489 -81780631 + (CCCTAA)n Simple_repeat Simple_repeat 6 174 0 4 1148 409 252 30 18 chr4 73849814 73849917 -81780203 + (CCCTAA)n Simple_repeat Simple_repeat 3 107 0 4 1148 1429 66 38 16 chr4 73849917 73850101 -81780019 - B2_Mm2 SINE B2 -7 188 1 4 1148 409 252 30 18 chr4 73850101 73850163 -81779957 + (CCCTAA)n Simple_repeat Simple_repeat 6 68 0 4 1148 222 258 0 0 chr4 73850245 73850334 -81779786 + (CCCTAA)n Simple_repeat Simple_repeat 4 92 0 4 1148 486 49 0 0 chr4 73850492 73850553 -81779567 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1148 216 67 0 0 chr4 73850555 73850585 -81779535 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1148 314 261 6 0 chr4 73850602 73850778 -81779342 + (CCCTAA)n Simple_repeat Simple_repeat 4 180 0 4 1148 223 309 14 14 chr4 73850796 73850934 -81779186 + (CCCTAA)n Simple_repeat Simple_repeat 1 138 0 4 1148 1782 112 0 4 chr4 73851090 73851349 -81778771 - L1_Mus4 LINE L1 -5 6631 6374 4 1148 754 127 70 0 chr4 73851405 73851547 -81778573 - MurERV4_19-int LTR ERVK 0 5780 5629 4 1148 501 95 0 0 chr4 73851547 73851612 -81778508 - L1_Mm LINE L1 -1507 4376 4312 4 1148 4550 65 3 14 chr4 73851612 73852178 -81777942 + L1Md_F2 LINE L1 6023 6582 0 4 1148 1468 151 75 53 chr4 73852280 73852601 -81777519 - MurERV4_19-int LTR ERVK -264 5516 5189 4 1148 1401 118 34 17 chr4 73852629 73852862 -81777258 - MurERV4_19-int LTR ERVK -551 5229 4993 4 1148 11866 165 33 7 chr4 73852843 73854885 -81775235 - MurERV4_19-int LTR ERVK -3647 2133 39 4 1148 2132 272 27 147 chr4 73854903 73855308 -81774812 + Lx8 LINE L1 4863 5277 -603 4 1148 1230 68 0 0 chr4 73855308 73855455 -81774665 + B1_Mus1 SINE Alu 2 148 0 4 1148 2132 272 27 147 chr4 73855455 73856175 -81773945 + Lx8 LINE L1 5278 5853 -27 4 1148 1210 285 122 29 chr4 73856271 73856478 -81773642 + Lx8 LINE L1 6036 6274 -1199 4 1148 1392 70 23 6 chr4 73856478 73856651 -81773469 + B2_Mm2 SINE B2 2 177 -18 4 1148 1210 285 122 29 chr4 73856651 73856993 -81773127 + Lx8 LINE L1 6275 6636 -837 4 1148 1676 47 5 0 chr4 73857225 73857416 -81772704 - B2_Mm1t SINE B2 0 193 2 4 1148 28 86 0 0 chr4 73857502 73857572 -81772548 + AT_rich Low_complexity Low_complexity 1 70 0 4 1148 441 368 24 18 chr4 73857630 73857796 -81772324 - B3A SINE B2 -30 168 2 4 1148 240 197 65 13 chr4 73857878 73857955 -81772165 + L1MD LINE L1 5219 5299 -847 4 1148 35 0 0 0 chr4 73857959 73857994 -81772126 + AT_rich Low_complexity Low_complexity 1 35 0 4 1148 3417 189 55 33 chr4 73858040 73858784 -81771336 - Lx6 LINE L1 -1461 5999 5231 4 1148 4624 78 0 13 chr4 73858784 73859380 -81770740 - L1Md_F2 LINE L1 0 6582 5995 5 1148 3417 183 60 33 chr4 73859380 73859519 -81770601 - Lx6 LINE L1 -650 5230 5090 4 1148 3722 276 63 12 chr4 73859517 73860520 -81769600 + Lx6 LINE L1 6003 7056 -404 5 1148 3769 205 115 77 chr4 73860518 73861489 -81768631 - RMER1A Other Other -22 1008 1 5 1148 1675 276 118 29 chr4 73861505 73862036 -81768084 - RMER1B Other Other -498 568 7 5 1148 3003 58 0 0 chr4 73862036 73862382 -81767738 + ORR1A0 LTR MaLR 1 346 0 5 1148 1675 291 25 73 chr4 73862382 73862590 -81767530 - RMER1B Other Other -843 223 7 5 1148 3633 186 81 58 chr4 73862876 73863355 -81766765 - Lx6 LINE L1 -2872 3008 2494 4 1148 1300 27 0 13 chr4 73863355 73863366 -81766754 - B1_Mm SINE Alu 0 147 138 5 1148 243 0 0 0 chr4 73863366 73863393 -81766727 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1148 1300 27 0 13 chr4 73863393 73863530 -81766590 - B1_Mm SINE Alu -10 137 1 5 1148 3633 186 81 58 chr4 73863530 73863915 -81766205 - Lx6 LINE L1 -3387 2493 2124 4 1148 1180 259 92 62 chr4 73863942 73864461 -81765659 + RLTR22_Mur LTR ERVK 151 685 -1163 5 1148 1151 104 0 7 chr4 73864498 73864643 -81765477 - B1_Mus1 SINE Alu -4 144 1 5 1148 449 76 0 15 chr4 73864670 73864737 -81765383 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 5 1148 1046 130 0 0 chr4 73864737 73864883 -81765237 - B1_Mus1 SINE Alu -2 146 1 5 1148 226 118 24 84 chr4 73864885 73864968 -81765152 + RLTR22_Mur LTR ERVK 673 750 -1098 5 1148 422 218 53 60 chr4 73865071 73865146 -81764974 + RLTR22_Mur LTR ERVK 1148 1214 -634 5 1148 252 0 0 0 chr4 73865146 73865174 -81764946 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1148 422 218 53 60 chr4 73865174 73865249 -81764871 + RLTR22_Mur LTR ERVK 1215 1296 -552 5 1148 261 197 0 70 chr4 73865251 73865292 -81764828 + RMER12 LTR ERVK 1164 1202 -202 5 1148 360 43 0 0 chr4 73865292 73865338 -81764782 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1148 297 236 113 198 chr4 73865338 73865529 -81764591 + RMER12 LTR ERVK 975 1152 -170 5 1148 874 173 50 70 chr4 73865661 73865903 -81764217 - Lx6 LINE L1 -3764 2116 1880 4 1148 785 301 138 14 chr4 73865886 73866395 -81763725 - L1M2 LINE L1 -757 5386 4815 5 1148 4661 20 0 0 chr4 73866808 73867301 -81762819 - MT2_Mm LTR ERVL 0 493 1 5 1148 558 93 0 0 chr4 73867429 73867515 -81762605 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1148 656 193 0 34 chr4 73867515 73867633 -81762487 - MTC LTR MaLR -117 304 191 5 1148 309 26 0 0 chr4 73867637 73867675 -81762445 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1148 1190 48 0 0 chr4 73867675 73867820 -81762300 - B2_Mm2 SINE B2 -50 145 1 5 1148 1227 184 18 0 chr4 73867820 73868026 -81762094 - MTC LTR MaLR -208 213 4 5 1148 306 115 0 0 chr4 73868200 73868252 -81761868 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1148 363 289 9 37 chr4 73868254 73868362 -81761758 - PB1D10 SINE Alu -10 107 3 5 1148 1191 68 7 0 chr4 73868800 73868946 -81761174 + B1_Mm SINE Alu 1 147 0 5 1148 360 221 39 0 chr4 73869380 73869457 -81760663 + ID4_ SINE ID 1 80 -3 5 1148 221 0 0 33 chr4 73869513 73869543 -81760577 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1148 248 220 33 17 chr4 73869692 73869752 -81760368 + L2a LINE L2 3357 3417 -9 5 1148 1008 124 0 0 chr4 73869825 73870003 -81760117 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1148 313 205 35 9 chr4 73870069 73870182 -81759938 + CT-rich Low_complexity Low_complexity 4 119 0 5 1148 1690 150 38 53 chr4 73871638 73872091 -81758029 + RMER17C LTR ERVK 16 439 -519 5 1148 266 252 72 115 chr4 73872431 73872570 -81757550 - RLTR41 LTR ERV1 -62 384 252 5 1148 192 77 0 0 chr4 73873877 73873903 -81756217 + (C)n Simple_repeat Simple_repeat 1 26 0 5 1148 186 43 0 0 chr4 73875311 73875334 -81754786 + (CAG)n Simple_repeat Simple_repeat 2 24 0 5 1148 486 0 0 0 chr4 73875409 73875463 -81754657 + (CAG)n Simple_repeat Simple_repeat 2 55 0 5 1148 201 74 0 0 chr4 73876867 73876894 -81753226 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1148 1876 184 14 105 chr4 73877757 73877852 -81752268 + ORR1C2 LTR MaLR 1 91 -293 5 1148 3839 55 8 41 chr4 73877852 73878345 -81751775 + L1Md_F2 LINE L1 6106 6582 0 5 1148 1876 184 14 105 chr4 73878345 73878669 -81751451 + ORR1C2 LTR MaLR 92 382 -2 5 1148 409 153 28 0 chr4 73879762 73879834 -81750286 + MTC LTR MaLR 30 103 -318 5 1148 232 286 0 0 chr4 73879822 73879871 -81750249 + MTC LTR MaLR 205 253 -168 5 1148 1111 52 73 0 chr4 73881670 73881806 -81748314 - B1_Mus2 SINE Alu 0 147 2 5 1148 424 188 19 11 chr4 73882195 73882289 -81747831 + ORR1C2 LTR MaLR 100 195 -172 5 1148 494 31 0 15 chr4 73882828 73882893 -81747227 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1148 1877 124 35 76 chr4 73882917 73883059 -81747061 - ORR1A4 LTR MaLR -1 328 182 5 1148 1997 133 32 76 chr4 73883059 73883400 -81746720 + ORR1A3 LTR MaLR 1 326 0 5 1148 1877 124 35 76 chr4 73883400 73883598 -81746522 - ORR1A4 LTR MaLR -148 181 2 5 1148 567 0 0 0 chr4 73884280 73884343 -81745777 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 1148 462 18 0 0 chr4 73884344 73884399 -81745721 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1148 3494 129 45 117 chr4 73884694 73885448 -81744672 - RMER6A LTR ERVK 0 756 57 5 1148 1805 51 0 5 chr4 73885587 73885802 -81744318 - L1Md_F2 LINE L1 -12 6570 6357 5 1148 2660 63 3 0 chr4 73885802 73886133 -81743987 + L1Md_F2 LINE L1 6050 6381 -201 5 1148 511 245 90 18 chr4 73886138 73886304 -81743816 + RMER15-int LTR ERVL 509 686 -4313 5 1148 879 239 9 69 chr4 73886315 73886350 -81743770 + B3 SINE B2 8 41 -175 5 1148 1169 58 0 7 chr4 73886350 73886488 -81743632 + B1_Mus2 SINE Alu 1 137 -10 5 1148 351 0 0 0 chr4 73886488 73886527 -81743593 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1148 879 239 9 69 chr4 73886527 73886706 -81743414 + B3 SINE B2 42 209 -7 5 1148 2523 281 85 23 chr4 73886740 73887619 -81742501 + RMER15-int LTR ERVL 697 1630 -3369 5 1148 1231 36 0 35 chr4 73887866 73888011 -81742109 + B1_Mus2 SINE Alu 3 142 -5 5 1148 274 369 15 23 chr4 73888012 73888145 -81741975 + RMER15-int LTR ERVL 1944 2075 -2924 5 1148 244 231 0 167 chr4 73888147 73888225 -81741895 + ID_B1 SINE B4 160 224 0 5 1148 23 0 0 0 chr4 73888554 73888577 -81741543 + AT_rich Low_complexity Low_complexity 1 23 0 5 1148 3669 26 0 5 chr4 73888955 73889385 -81740735 - L1Md_F2 LINE L1 -12 6570 6143 5 1148 1205 85 56 17 chr4 73889763 73889943 -81740177 - B2_Mm2 SINE B2 -8 187 1 5 1148 2312 158 21 50 chr4 73890234 73890709 -81739411 - RMER6B LTR ERVK 0 461 1 5 1148 1313 64 17 6 chr4 73890891 73891064 -81739056 - B2_Mm2 SINE B2 -19 176 2 5 1148 248 341 62 39 chr4 73891251 73891379 -81738741 + Tigger9a DNA Tigger 23 153 -579 5 1148 469 278 90 0 chr4 73891406 73891539 -81738581 + ID_B1 SINE B4 80 224 0 5 1148 1539 55 0 0 chr4 73891569 73891770 -81738350 + L1_Mus2 LINE L1 6086 6286 -280 5 1148 750 58 0 0 chr4 73891782 73891886 -81738234 + L1_Mus2 LINE L1 6461 6564 -2 5 1148 1079 51 7 0 chr4 73892713 73892851 -81737269 + B1_Mus2 SINE Alu 9 147 0 5 1148 207 61 19 58 chr4 73892851 73892903 -81737217 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 5 1148 652 153 40 0 chr4 73893011 73893135 -81736985 + B2_Mm1t SINE B2 58 186 -7 5 1148 1098 43 50 0 chr4 73893155 73893295 -81736825 + B1_Mus2 SINE Alu 1 147 0 5 1148 957 180 136 19 chr4 73893395 73893644 -81736476 - MT2A LTR ERVL 0 533 170 5 1148 1280 67 62 0 chr4 73893644 73893823 -81736297 + B2_Mm2 SINE B2 2 191 -4 5 1148 957 191 199 48 chr4 73893823 73893990 -81736130 - MT2A LTR ERVL -364 169 5 5 1148 192 77 0 0 chr4 73894057 73894083 -81736037 + (CACCAT)n Simple_repeat Simple_repeat 6 31 0 5 1148 681 200 20 14 chr4 73894188 73894335 -81735785 + B1_Mur3 SINE Alu 1 148 -1 5 1148 25 0 0 0 chr4 73894617 73894642 -81735478 + AT_rich Low_complexity Low_complexity 1 25 0 5 1148 1115 77 0 7 chr4 73894651 73894788 -81735332 + B1_Mus1 SINE Alu 3 139 -9 5 1148 525 55 0 0 chr4 73894788 73894861 -81735259 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 5 1148 219 69 0 0 chr4 73894944 73894973 -81735147 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 5 1148 249 108 0 0 chr4 73895036 73895073 -81735047 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 5 1148 393 244 151 24 chr4 73895101 73895227 -81734893 - B1F1 SINE Alu -6 143 2 5 1148 634 189 20 53 chr4 73895255 73895406 -81734714 - B1_Mur4 SINE Alu 0 150 5 5 1148 539 122 11 0 chr4 73895512 73895602 -81734518 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 5 1148 1137 35 42 7 chr4 73895619 73895761 -81734359 - B1_Mus2 SINE Alu 0 147 1 5 1148 374 0 22 0 chr4 73895893 73895939 -81734181 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1148 588 226 14 83 chr4 73896033 73896178 -81733942 - B1_Mm SINE Alu -5 142 8 5 1148 265 239 30 111 chr4 73896104 73896203 -81733917 - MT2B LTR ERVL -362 239 149 5 1148 197 33 33 0 chr4 73896441 73896471 -81733649 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5 1148 1161 83 6 0 chr4 73896471 73896628 -81733492 - B2_Mm1t SINE B2 -35 158 1 5 1148 26 30 0 0 chr4 73896724 73896757 -81733363 + AT_rich Low_complexity Low_complexity 1 33 0 5 1148 499 306 33 0 chr4 73896816 73896937 -81733183 - ID_B1 SINE B4 -7 217 93 5 1148 198 0 0 0 chr4 73898704 73898726 -81731394 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1148 452 218 63 9 chr4 73898999 73899110 -81731010 - B1F2 SINE Alu -6 143 27 5 1148 215 338 15 15 chr4 73899179 73899245 -81730875 + ID SINE ID 5 70 -154 5 1148 288 290 11 11 chr4 73899186 73899280 -81730840 + BC1_Mm scRNA scRNA 11 104 -48 5 1148 27 0 0 0 chr4 73899287 73899314 -81730806 + AT_rich Low_complexity Low_complexity 1 27 0 5 1148 330 26 0 0 chr4 73899435 73899474 -81730646 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1148 428 262 189 8 chr4 73899688 73899815 -81730305 - ID_B1 SINE B4 -73 151 2 5 1148 226 132 0 0 chr4 73899961 73899999 -81730121 + tRNA-Ser-TCY tRNA tRNA 1 38 -47 5 1148 3849 249 113 47 chr4 73900372 73900670 -81729450 - Lx7 LINE L1 -463 7233 6953 5 1148 1176 62 0 0 chr4 73900670 73900814 -81729306 - B1_Mus2 SINE Alu 0 147 4 5 1148 3849 249 113 47 chr4 73900814 73902048 -81728072 - Lx7 LINE L1 -744 6952 5599 5 1148 3053 197 96 40 chr4 73902042 73902911 -81727209 + Lx7 LINE L1 4678 5594 -286 5 1148 497 244 90 15 chr4 73902916 73903049 -81727071 - B1_Mur1 SINE Alu -1 148 6 5 1148 302 292 86 46 chr4 73903049 73903067 -81727053 - ID_B1 SINE B4 -1 223 67 5 1148 1170 56 30 41 chr4 73903105 73903274 -81726846 - B2_Mm1t SINE B2 0 193 27 5 1148 262 29 0 0 chr4 73903310 73903344 -81726776 - B3 SINE B2 -182 34 1 5 1148 270 0 0 0 chr4 73903349 73903379 -81726741 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1148 730 148 57 8 chr4 73904210 73904333 -81725787 - RMER5 LTR ERV1 -3 531 403 6 1148 242 228 126 19 chr4 73904354 73904457 -81725663 - B1F SINE Alu -21 128 15 6 1148 375 286 93 19 chr4 73904465 73904572 -81725548 - B1F SINE Alu -1 148 34 6 1148 233 274 106 121 chr4 73904641 73904719 -81725401 - ID_B1 SINE B4 -85 139 1 6 1148 237 183 48 48 chr4 73904719 73904782 -81725338 - ID4_ SINE ID -20 63 1 6 1148 222 290 16 0 chr4 73904937 73904999 -81725121 + CT-rich Low_complexity Low_complexity 2 64 0 6 1148 1954 202 45 87 chr4 73905398 73905928 -81724192 + RMER5 LTR ERV1 1 508 -26 6 1148 21 0 0 0 chr4 73905951 73905972 -81724148 + AT_rich Low_complexity Low_complexity 1 21 0 6 1148 478 309 72 0 chr4 73906294 73906433 -81723687 - B1F2 SINE Alu 0 149 1 6 1148 375 264 0 42 chr4 73906554 73906649 -81723471 - B3 SINE B2 -125 91 1 6 1148 357 24 0 0 chr4 73906693 73906735 -81723385 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 6 1148 526 182 68 0 chr4 73906749 73906837 -81723283 - B1_Mur3 SINE Alu -39 110 17 6 1148 514 257 228 6 chr4 73907253 73907433 -81722687 + ID_B1 SINE B4 3 222 -2 6 1148 1674 201 37 0 chr4 73907464 73907787 -81722333 + MTC LTR MaLR 1 335 -86 6 1148 540 233 131 62 chr4 73907800 73907960 -81722160 - B4A SINE B4 -86 206 36 6 1148 1136 158 235 29 chr4 73908208 73908320 -81721800 + RMER10B LTR ERVL 59 193 -205 6 1148 288 127 0 0 chr4 73908320 73908375 -81721745 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 1148 1136 158 235 29 chr4 73908375 73908543 -81721577 + RMER10B LTR ERVL 194 397 -1 6 1148 261 180 0 0 chr4 73909021 73909071 -81721049 + CT-rich Low_complexity Low_complexity 3 52 0 6 1148 308 292 130 19 chr4 73909075 73909183 -81720937 - B1F SINE Alu 0 120 1 6 1148 249 316 74 11 chr4 73909217 73909393 -81720727 - L1MB7 LINE L1 -57 6127 5941 6 1148 388 329 35 42 chr4 73909471 73909572 -81720548 - RSINE1 SINE B4 -22 143 43 6 1148 286 23 0 44 chr4 73909572 73909617 -81720503 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1148 467 211 211 0 chr4 73909617 73909731 -81720389 - B1_Mus2 SINE Alu -9 138 1 6 1148 388 329 35 42 chr4 73909731 73909771 -81720349 - RSINE1 SINE B4 -123 42 3 6 1148 757 161 29 7 chr4 73909827 73909965 -81720155 + B1_Mur3 SINE Alu 5 145 -4 6 1148 306 0 0 0 chr4 73909967 73910001 -81720119 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 6 1148 501 304 107 44 chr4 73910027 73910203 -81719917 + B4 SINE B4 3 201 -91 6 1148 1766 133 88 62 chr4 73910203 73910264 -81719856 - ORR1B1 LTR MaLR 0 394 353 6 1148 1040 90 7 20 chr4 73910264 73910411 -81719709 - B1_Mus2 SINE Alu -1 146 2 6 1148 1766 133 88 62 chr4 73910411 73910733 -81719387 - ORR1B1 LTR MaLR -42 352 1 6 1148 501 304 107 44 chr4 73910733 73910817 -81719303 + B4 SINE B4 202 281 -11 6 1148 270 0 0 0 chr4 73910817 73910847 -81719273 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1148 240 302 27 55 chr4 73910900 73911015 -81719105 - B2_Mm2 SINE B2 -80 113 2 6 1148 284 0 28 0 chr4 73911019 73911055 -81719065 + (TTA)n Simple_repeat Simple_repeat 2 38 0 6 1148 234 0 0 0 chr4 73911069 73911095 -81719025 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1148 860 212 281 22 chr4 73911186 73911456 -81718664 - MTEa LTR MaLR -37 342 3 6 1148 198 0 0 0 chr4 73912353 73912375 -81717745 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 6 1148 222 238 48 34 chr4 73912384 73912490 -81717630 - B1F SINE Alu 0 149 16 6 1148 231 229 0 0 chr4 73913151 73913212 -81716908 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1148 383 241 106 9 chr4 73913576 73913689 -81716431 + RSINE1 SINE B4 14 137 -28 6 1148 353 287 10 31 chr4 73913799 73913896 -81716224 - B1_Mus2 SINE Alu -7 140 46 6 1148 555 236 281 12 chr4 73913962 73914129 -81715991 + B3 SINE B2 2 213 -3 6 1148 1051 99 0 0 chr4 73914151 73914292 -81715828 + B1_Mus2 SINE Alu 1 141 -6 6 1148 468 0 0 0 chr4 73914294 73914346 -81715774 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 6 1148 36 23 0 0 chr4 73914373 73914416 -81715704 + AT_rich Low_complexity Low_complexity 1 43 0 6 1148 523 286 91 6 chr4 73914523 73914688 -81715432 - B3 SINE B2 -35 181 3 6 1148 457 273 219 7 chr4 73914700 73914855 -81715265 - ID_B1 SINE B4 -2 222 35 6 1148 238 306 16 0 chr4 73914858 73914920 -81715200 + polypyrimidine Low_complexity Low_complexity 2 64 0 6 1148 534 200 88 15 chr4 73914920 73915057 -81715063 - B1_Mur3 SINE Alu -2 147 1 6 1148 730 243 30 60 chr4 73915086 73915287 -81714833 - B3A SINE B2 0 198 4 6 1148 430 320 0 72 chr4 73915523 73915661 -81714459 + B4A SINE B4 29 156 -136 6 1148 1499 62 16 0 chr4 73915760 73915952 -81714168 - B2_Mm2 SINE B2 0 195 1 6 1148 1244 79 50 6 chr4 73916177 73916356 -81713764 - B2_Mm2 SINE B2 -7 188 2 6 1148 310 300 100 0 chr4 73916396 73916496 -81713624 + ID_B1 SINE B4 94 203 -21 6 1148 965 80 65 0 chr4 73916639 73916777 -81713343 - B1_Mm SINE Alu 0 147 1 6 1148 264 365 172 9 chr4 73917643 73917864 -81712256 - MLT1F LTR MaLR 0 548 292 6 1148 183 129 0 0 chr4 73918036 73918067 -81712053 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 6 1148 189 0 0 0 chr4 73918304 73918325 -81711795 + (CAT)n Simple_repeat Simple_repeat 1 21 0 6 1148 1220 86 52 0 chr4 73918325 73918499 -81711621 - B2_Mm1t SINE B2 -10 183 1 6 1148 322 321 14 7 chr4 73918589 73918727 -81711393 - Lx8 LINE L1 -366 7107 6969 6 1148 354 294 0 68 chr4 73918811 73918928 -81711192 - PB1D10 SINE Alu -7 110 2 6 1148 315 0 0 0 chr4 73918983 73919018 -81711102 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1148 1219 62 0 0 chr4 73919056 73919202 -81710918 - B1_Mm SINE Alu 0 147 2 6 1148 451 260 79 115 chr4 73919269 73919434 -81710686 + ID_B1 SINE B4 1 159 -65 6 1148 23 33 0 0 chr4 73919712 73919742 -81710378 + AT_rich Low_complexity Low_complexity 1 30 0 6 1148 254 206 0 14 chr4 73919840 73919909 -81710211 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1148 282 253 11 0 chr4 73920060 73920137 -81709983 - ID2 SINE ID -56 96 17 6 1148 608 236 167 25 chr4 73920137 73920376 -81709744 - L1_Rod LINE L1 -201 5646 5374 6 1148 531 216 68 8 chr4 73920387 73920504 -81709616 - B1_Mur3 SINE Alu -25 124 1 6 1148 231 170 0 21 chr4 73920517 73920565 -81709555 - L1_Rod LINE L1 -479 5368 5322 6 1148 260 195 52 10 chr4 73920572 73920671 -81709449 - L1_Rod LINE L1 -1334 4809 4692 6 1148 1258 239 43 120 chr4 73920746 73921149 -81708971 - L1_Rod LINE L1 -2411 3436 3083 6 1148 1217 55 0 7 chr4 73921149 73921297 -81708823 - B1_Mus2 SINE Alu 0 147 1 6 1148 1258 239 43 120 chr4 73921297 73921382 -81708738 - L1_Rod LINE L1 -2765 3082 3011 6 1148 1055 86 14 0 chr4 73921382 73921521 -81708599 - B1_Mus1 SINE Alu -6 142 2 6 1148 1258 239 43 120 chr4 73921521 73921812 -81708308 - L1_Rod LINE L1 -2837 3010 2716 6 1148 886 260 65 17 chr4 73921806 73922158 -81707962 - L1_Rod LINE L1 -3538 2309 1941 6 1148 296 102 20 0 chr4 73922163 73922212 -81707908 + (TAA)n Simple_repeat Simple_repeat 3 52 0 6 1148 1209 48 0 7 chr4 73922239 73922387 -81707733 - B1_Mus2 SINE Alu 0 147 1 6 1148 443 246 80 58 chr4 73922399 73922537 -81707583 - B1_Mur2 SINE Alu -8 141 1 6 1148 711 243 148 17 chr4 73922548 73922730 -81707390 - L1_Rod LINE L1 -3914 1933 1720 6 1148 228 35 0 0 chr4 73922730 73922759 -81707361 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1148 711 243 148 17 chr4 73922759 73922920 -81707200 - L1_Rod LINE L1 -4128 1719 1546 6 1148 254 299 101 7 chr4 73922925 73923022 -81707098 - L1_Rod LINE L1 -4456 1391 1281 6 1148 216 67 0 0 chr4 73923022 73923052 -81707068 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 6 1148 254 299 101 7 chr4 73923052 73923092 -81707028 - L1_Rod LINE L1 -4567 1280 1242 6 1148 371 238 55 18 chr4 73923206 73923369 -81706751 - L1_Rod LINE L1 -6540 1068 900 6 1148 1514 114 19 12 chr4 73923952 73924209 -81705911 - L1_Mus3 LINE L1 -4 6634 6376 6 143 896 242 197 39 chr4 73924511 73924820 -81705300 - MTE2b LTR MaLR 0 379 22 6 1149 932 257 10 0 chr4 73924935 73925137 -81704983 - B3 SINE B2 -4 212 9 6 1149 573 306 82 16 chr4 73925145 73925328 -81704792 - B3A SINE B2 -3 195 1 6 1149 422 346 0 23 chr4 73925335 73925468 -81704652 - B1F1 SINE Alu -15 134 5 6 1149 442 313 49 66 chr4 73925493 73925719 -81704401 - ID_B1 SINE B4 -2 222 1 6 1149 1004 275 29 8 chr4 73925891 73926137 -81703983 + MTE2b LTR MaLR 3 253 -126 6 1149 201 74 0 0 chr4 73927133 73927160 -81702960 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1149 518 297 32 54 chr4 73927194 73927379 -81702741 - B3A SINE B2 -16 182 2 6 1149 455 278 34 17 chr4 73927397 73927514 -81702606 - ID_B1 SINE B4 -7 217 99 6 1149 243 312 0 140 chr4 73927613 73927706 -81702414 + ID4 SINE ID 2 81 -2 6 1149 1905 188 63 25 chr4 73927930 73928328 -81701792 - MTC LTR MaLR -8 413 1 6 1149 278 227 31 83 chr4 73928614 73928710 -81701410 - PB1D10 SINE Alu -8 109 19 6 1149 358 313 107 0 chr4 73928758 73928908 -81701212 - L1ME3B LINE L1 -405 5835 5670 6 1149 1295 81 23 0 chr4 73928957 73929131 -81700989 + B2_Mm2 SINE B2 4 181 -14 6 1149 446 55 335 0 chr4 73929144 73929250 -81700870 + B2_Mm2 SINE B2 47 191 -4 6 1149 1214 35 0 0 chr4 73929254 73929398 -81700722 + B1_Mus2 SINE Alu 4 147 0 6 1149 26 0 0 0 chr4 73929398 73929424 -81700696 + AT_rich Low_complexity Low_complexity 1 26 0 6 1149 189 0 0 0 chr4 73929548 73929569 -81700551 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1149 264 229 127 14 chr4 73929571 73929642 -81700478 - B1_Mur3 SINE Alu -8 141 63 6 1149 369 317 7 14 chr4 73929737 73929881 -81700239 + CT-rich Low_complexity Low_complexity 3 145 0 6 1149 766 200 36 31 chr4 73929882 73930079 -81700041 - RLTR20D LTR ERVK -270 258 1 6 1149 540 269 0 36 chr4 73930106 73930245 -81699875 - B1F2 SINE Alu -10 139 6 6 1149 311 220 62 52 chr4 73930276 73930372 -81699748 - B1F SINE Alu 0 149 53 6 1149 273 281 11 79 chr4 73930372 73930461 -81699659 + B1F SINE Alu 17 99 -50 6 1149 338 279 0 0 chr4 73930571 73930632 -81699488 + B3 SINE B2 70 130 -86 6 1149 1388 82 16 0 chr4 73930703 73930887 -81699233 + B2_Mm2 SINE B2 2 188 -7 6 1149 510 236 21 9 chr4 73931136 73931307 -81698813 - Lx8 LINE L1 -1584 5889 5696 7 1149 2082 183 85 87 chr4 73931332 73931686 -81698434 - RLTR31_Mm LTR ERVK 0 561 232 7 1149 902 30 73 36 chr4 73931686 73931823 -81698297 - L1Md_F3 LINE L1 0 6584 6443 7 1149 2082 183 85 87 chr4 73931823 73931941 -81698179 - RLTR31_Mm LTR ERVK -330 231 94 7 1149 255 122 0 0 chr4 73931941 73931990 -81698130 + (TCTG)n Simple_repeat Simple_repeat 1 49 0 7 1149 2082 183 85 87 chr4 73931990 73932078 -81698042 - RLTR31_Mm LTR ERVK -468 93 1 7 1149 561 285 110 28 chr4 73932078 73932432 -81697688 - Lx8 LINE L1 -220 5660 5278 7 1149 1198 130 82 55 chr4 73932685 73932905 -81697215 - URR1A DNA MER1_type 0 226 1 7 1149 1552 42 5 20 chr4 73932933 73933128 -81696992 - B2_Mm1a SINE B2 0 193 2 7 1149 337 306 21 103 chr4 73933129 73933289 -81696831 - L1_Rod LINE L1 -1118 5025 4880 7 1149 424 85 24 12 chr4 73933289 73933372 -81696748 + (TCTG)n Simple_repeat Simple_repeat 1 84 0 7 1149 496 322 17 22 chr4 73933374 73933552 -81696568 - B3A SINE B2 -19 179 3 7 1149 395 274 60 78 chr4 73933552 73933855 -81696265 - L1_Rod LINE L1 -1264 4879 4552 7 1149 4855 236 59 31 chr4 73933856 73935670 -81694450 - Lx9 LINE L1 -352 7292 5381 7 1149 301 0 0 64 chr4 73935670 73935717 -81694403 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 7 1149 1239 52 7 0 chr4 73935717 73935871 -81694249 - B2_Mm2 SINE B2 -40 155 1 7 1149 247 200 0 26 chr4 73935872 73935949 -81694171 - Lx9 LINE L1 -455 5392 5318 7 1149 702 296 109 73 chr4 73935946 73936315 -81693805 - L1_Mur3 LINE L1 -2948 2932 2586 7 1149 1276 109 27 0 chr4 73936315 73936499 -81693621 + B2_Mm2 SINE B2 2 190 -5 7 1149 702 296 109 73 chr4 73936499 73936855 -81693265 - L1_Mur3 LINE L1 -3295 2585 2181 7 1149 749 158 0 7 chr4 73936871 73937011 -81693109 + CT-rich Low_complexity Low_complexity 2 140 0 7 1149 669 292 63 9 chr4 73937093 73937592 -81692528 - L1_Mur3 LINE L1 -3785 2095 1576 7 1149 273 29 0 0 chr4 73937598 73937632 -81692488 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1149 253 325 12 24 chr4 73937722 73937804 -81692316 - BC1_Mm scRNA scRNA -66 86 6 7 1149 308 261 31 0 chr4 73937740 73937805 -81692315 - ID SINE ID -153 71 5 7 1149 21 0 0 0 chr4 73937846 73937867 -81692253 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 1383 92 0 25 chr4 73938070 73938270 -81691850 - B2_Mm2 SINE B2 0 195 1 7 1149 526 66 0 26 chr4 73939194 73939272 -81690848 - BC1_Mm scRNA scRNA -76 76 1 7 1149 410 165 95 42 chr4 73940024 73940119 -81690001 + B1_Mur2 SINE Alu 48 147 -2 7 1149 384 22 0 0 chr4 73940207 73940252 -81689868 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1149 23 33 0 0 chr4 73940364 73940394 -81689726 + AT_rich Low_complexity Low_complexity 1 30 0 7 1149 919 65 61 68 chr4 73940689 73940837 -81689283 - B1_Mus1 SINE Alu 0 148 2 7 1149 1047 207 5 42 chr4 73941389 73941606 -81688514 - B3 SINE B2 -5 211 3 7 1149 22 0 0 0 chr4 73941657 73941679 -81688441 + AT_rich Low_complexity Low_complexity 1 22 0 7 1149 546 57 0 0 chr4 73941844 73941914 -81688206 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1149 538 155 39 0 chr4 73941954 73942057 -81688063 - Lx4B LINE L1 -1132 5926 5820 7 1149 252 133 33 0 chr4 73942055 73942115 -81688005 - Lx5 LINE L1 -1395 5655 5594 7 1149 1290 103 11 0 chr4 73942580 73942765 -81687355 - B2_Mm1t SINE B2 -6 187 1 7 1149 382 265 128 8 chr4 73943457 73943590 -81686530 - B1F SINE Alu 0 149 1 7 1149 35 63 0 0 chr4 73944131 73944194 -81685926 + AT_rich Low_complexity Low_complexity 1 63 0 7 1149 810 118 80 7 chr4 73944715 73944852 -81685268 + B1_Mus1 SINE Alu 2 148 0 7 1149 261 370 116 5 chr4 73945598 73945788 -81684332 - LTR16A LTR ERVL -40 411 201 7 1149 1128 129 18 0 chr4 73945914 73946084 -81684036 + B2_Mm2 SINE B2 1 173 -22 7 1149 25 65 0 0 chr4 73946161 73946207 -81683913 + AT_rich Low_complexity Low_complexity 1 46 0 7 1149 2853 30 21 3 chr4 73946858 73947198 -81682922 - ORR1A0 LTR MaLR 0 346 1 7 1149 396 0 0 0 chr4 73947697 73947741 -81682379 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1149 608 205 66 0 chr4 73947741 73947863 -81682257 - B1_Mur2 SINE Alu -10 139 10 7 1149 313 176 10 150 chr4 73947787 73947887 -81682233 - MT2B LTR ERVL -361 240 155 7 1149 296 335 197 22 chr4 73947925 73948148 -81681972 - Lx8 LINE L1 -28 7445 7184 7 1149 460 233 2 2 chr4 73948282 73948401 -81681719 - L1_Mur3 LINE L1 -1912 4234 4083 7 1149 754 271 74 30 chr4 73948428 73948831 -81681289 + L1_Mur3 LINE L1 2892 3312 -2568 7 1149 284 284 0 90 chr4 73948871 73949026 -81681094 + Lx6 LINE L1 7294 7434 -26 7 1149 1580 257 50 16 chr4 73949132 73949649 -81680471 + L1_Mur3 LINE L1 3504 4038 -1842 7 1149 222 143 0 0 chr4 73950497 73950546 -81679574 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1149 1343 182 58 215 chr4 73950997 73951172 -81678948 + MTB_Mm LTR MaLR 1 196 -211 7 1149 1157 61 0 0 chr4 73951172 73951319 -81678801 + B1_Mus1 SINE Alu 2 148 0 7 1149 1343 182 58 215 chr4 73951319 73951626 -81678494 + MTB_Mm LTR MaLR 197 407 0 7 1149 723 149 28 50 chr4 73951789 73951930 -81678190 + URR1B DNA MER1_type 88 225 0 7 1149 315 259 59 86 chr4 73951794 73951946 -81678174 - CYRA11_Mm Unknown Y-chromosome -313 304 157 7 1149 537 313 32 26 chr4 73952062 73952216 -81677904 + RSINE1 SINE B4 11 165 0 7 1149 1308 34 81 38 chr4 73952542 73952727 -81677393 - B2_Mm2 SINE B2 0 195 3 7 1149 27 29 0 0 chr4 73952821 73952855 -81677265 + AT_rich Low_complexity Low_complexity 1 34 0 7 1149 216 0 0 0 chr4 73952982 73953006 -81677114 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 7 1149 573 262 31 8 chr4 73953450 73953577 -81676543 + B3 SINE B2 8 137 -79 7 1149 474 18 0 0 chr4 73953633 73953688 -81676432 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1149 1011 131 0 0 chr4 73953711 73953864 -81676256 + B2_Mm2 SINE B2 2 154 -41 7 1149 185 0 0 39 chr4 73953865 73953891 -81676229 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 1149 515 247 42 119 chr4 73955449 73955642 -81674478 - B3A SINE B2 -4 191 14 7 1149 324 0 0 0 chr4 73955727 73955763 -81674357 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1149 1011 197 14 19 chr4 73956475 73956687 -81673433 - B3 SINE B2 -5 211 1 7 1149 1304 99 21 0 chr4 73956845 73957036 -81673084 + B2_Mm2 SINE B2 1 195 0 7 1149 23 54 0 0 chr4 73957797 73957834 -81672286 + AT_rich Low_complexity Low_complexity 1 37 0 7 1149 233 29 29 0 chr4 73957967 73958001 -81672119 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 7 1149 851 344 54 35 chr4 73958016 73958477 -81671643 - Lx8 LINE L1 -59 7414 6945 7 1149 481 276 24 8 chr4 73958508 73958632 -81671488 - B3A SINE B2 -37 161 36 7 1149 2363 292 81 39 chr4 73958639 73959319 -81670801 - L1_Mur3 LINE L1 -132 5748 5061 7 1149 387 0 0 0 chr4 73959325 73959368 -81670752 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1149 1009 110 0 20 chr4 73959368 73959510 -81670610 - B1_Mus1 SINE Alu -7 141 1 7 1149 2363 292 81 39 chr4 73959510 73959806 -81670314 - L1_Mur3 LINE L1 -820 5060 4742 7 1149 1141 35 14 0 chr4 73959806 73959951 -81670169 - B1_Mm SINE Alu 0 147 1 7 1149 2363 292 81 39 chr4 73959951 73960211 -81669909 - L1_Mur3 LINE L1 -1139 4741 4459 7 1149 23 68 0 0 chr4 73961332 73961376 -81668744 + AT_rich Low_complexity Low_complexity 1 44 0 7 1149 213 65 0 0 chr4 73961815 73961846 -81668274 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1149 1180 62 0 0 chr4 73961846 73961991 -81668129 - B1_Mm SINE Alu -2 145 1 7 1149 3692 67 29 27 chr4 73963167 73963217 -81666903 - MusHAL1 LINE L1 -3 2709 2666 7 1149 1439 38 11 26 chr4 73963217 73963406 -81666714 - B2_Mm2 SINE B2 -9 186 1 7 1149 3692 67 29 27 chr4 73963406 73963904 -81666216 - MusHAL1 LINE L1 -47 2665 2160 7 1149 370 172 295 21 chr4 73964596 73964691 -81665429 - ORR1D1 LTR MaLR -222 152 32 7 1149 31 0 0 0 chr4 73964796 73964827 -81665293 + AT_rich Low_complexity Low_complexity 1 31 0 7 1149 3127 126 9 43 chr4 73964847 73965379 -81664741 - Lx LINE L1 0 6654 6141 7 1149 21 0 0 0 chr4 73965705 73965726 -81664394 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 637 228 61 14 chr4 73966507 73966721 -81663399 - ORR1D1-int LTR MaLR -1022 941 718 7 1149 558 231 75 68 chr4 73966680 73966936 -81663184 - MT2B LTR ERVL -314 287 1 7 1149 2296 187 128 55 chr4 73966978 73967478 -81662642 - ORR1D1-int LTR MaLR -1323 640 86 7 1149 1992 34 4 0 chr4 73967478 73967717 -81662403 - L1_Mus1 LINE L1 0 6567 6328 7 1149 2296 187 128 55 chr4 73967717 73967800 -81662320 - ORR1D1-int LTR MaLR -1878 85 14 7 1149 529 338 7 7 chr4 73969801 73969950 -81660170 - 7SLRNA srpRNA srpRNA -99 215 67 7 1149 21 36 0 0 chr4 73970800 73970828 -81659292 + AT_rich Low_complexity Low_complexity 1 28 0 7 1149 1331 85 0 60 chr4 73971087 73971288 -81658832 - B2_Mm2 SINE B2 -5 190 2 7 1149 252 0 0 0 chr4 73971449 73971477 -81658643 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1149 1043 90 0 20 chr4 73971477 73971625 -81658495 - B1_Mm SINE Alu 0 147 3 7 1149 209 306 0 0 chr4 73971675 73971737 -81658383 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1149 299 256 8 0 chr4 73971737 73971854 -81658266 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 7 1149 456 339 15 53 chr4 73972786 73972992 -81657128 - ID_B1 SINE B4 0 224 27 7 1149 279 299 11 0 chr4 73972935 73973022 -81657098 - RMER15 LTR ERVL -66 509 422 7 1149 465 19 0 0 chr4 73973240 73973294 -81656826 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1149 21 0 0 0 chr4 73974399 73974420 -81655700 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 1096 44 0 0 chr4 73974745 73974880 -81655240 - B1_Mus2 SINE Alu -12 135 1 7 1149 2789 90 43 12 chr4 73975338 73975754 -81654366 + L1_Mus4 LINE L1 6206 6634 -2 7 1149 186 291 67 44 chr4 73977243 73977333 -81652787 - L3 LINE CR1 -1072 3417 3326 7 1149 309 312 43 12 chr4 73977405 73977567 -81652553 - L1ME4a LINE L1 0 6124 5958 7 1149 403 237 50 50 chr4 73977904 73978024 -81652096 - B1_Mur2 SINE Alu -1 148 29 7 1149 200 170 0 19 chr4 73978035 73978089 -81652031 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 7 1149 271 144 60 30 chr4 73978101 73978201 -81651919 + (TTATA)n Simple_repeat Simple_repeat 2 104 0 7 1149 354 284 126 18 chr4 73978383 73978494 -81651626 + B3 SINE B2 1 123 -93 7 1149 899 219 100 37 chr4 73978700 73978999 -81651121 - RMER17C LTR ERVK -92 318 1 8 1149 984 125 228 0 chr4 73979147 73979331 -81650789 + L1_Mm LINE L1 5558 5783 -100 8 1149 1839 59 25 0 chr4 73980103 73980340 -81649780 + L1_Mus3 LINE L1 6155 6397 -241 8 1149 26 0 0 0 chr4 73980340 73980366 -81649754 + AT_rich Low_complexity Low_complexity 1 26 0 8 1149 22 0 0 0 chr4 73981910 73981932 -81648188 + AT_rich Low_complexity Low_complexity 1 22 0 8 1149 293 290 11 11 chr4 73982197 73982291 -81647829 + CT-rich Low_complexity Low_complexity 6 99 0 8 1149 352 250 14 14 chr4 73982292 73982365 -81647755 - ID4 SINE ID -7 76 4 8 1149 609 273 251 0 chr4 73982477 73982664 -81647456 + B4A SINE B4 1 234 -58 8 1149 660 127 210 8 chr4 73983189 73983308 -81646812 - B1_Mur4 SINE Alu -3 147 5 8 1149 370 277 91 2 chr4 73983766 73983917 -81646203 - B3 SINE B2 0 198 27 8 1149 769 239 28 33 chr4 73984024 73984236 -81645884 - RMER13B LTR ERVK -747 211 1 8 1149 2509 183 53 73 chr4 73984260 73984903 -81645217 - RMER17A-int LTR ERVK -33 1695 1066 8 1149 470 174 20 10 chr4 73984950 73985049 -81645071 - RMER17A-int LTR ERVK -644 1084 985 8 1149 674 185 24 48 chr4 73985088 73985253 -81644867 - RMER17A-int LTR ERVK -737 991 831 8 1149 1477 215 127 63 chr4 73985842 73986502 -81643618 - RMER13B LTR ERVK -48 910 292 8 1149 2876 28 31 0 chr4 73989978 73990330 -81639790 - L1Md_F2 LINE L1 0 6582 6220 8 1149 207 0 0 0 chr4 73990405 73990428 -81639692 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 8 1149 712 160 0 0 chr4 73990434 73990540 -81639580 - B3 SINE B2 -109 107 2 8 1149 22 0 0 0 chr4 73990956 73990978 -81639142 + AT_rich Low_complexity Low_complexity 1 22 0 8 1149 543 170 0 0 chr4 73992132 73992232 -81637888 + (TA)n Simple_repeat Simple_repeat 1 100 0 8 1149 257 319 24 0 chr4 73992263 73992359 -81637761 - ID4 SINE ID -50 102 3 8 1149 577 283 70 15 chr4 73992382 73992583 -81637537 - B3 SINE B2 -4 212 1 8 1149 235 341 21 43 chr4 73992979 73993073 -81637047 - PB1D10 SINE Alu -34 115 24 8 1149 203 184 0 0 chr4 73993082 73993120 -81637000 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8 1149 256 329 51 70 chr4 73993541 73993698 -81636422 + RSINE1 SINE B4 12 165 0 8 1149 646 175 5 12 chr4 73993779 73993906 -81636214 + B1_Mus1 SINE Alu 7 128 -20 8 1149 207 0 0 0 chr4 73993964 73993987 -81636133 + (TAG)n Simple_repeat Simple_repeat 3 25 0 8 1149 1969 318 44 24 chr4 73995524 73996290 -81633830 - Lx8 LINE L1 -468 7005 6224 8 1149 347 231 26 0 chr4 73996334 73996412 -81633708 - ORR1D1 LTR MaLR -16 368 289 8 1149 14435 62 3 3 chr4 73996433 73998996 -81631124 - L1Md_F2 LINE L1 -13 6569 4009 8 1149 1125 227 64 64 chr4 73998996 73999293 -81630827 - ORR1D1 LTR MaLR -77 297 1 8 1149 472 285 76 107 chr4 73999301 73999633 -81630487 - Lx8 LINE L1 -1317 6156 5789 8 1149 999 72 168 7 chr4 73999633 73999788 -81630332 - B2_Mm2 SINE B2 -14 181 2 8 1149 472 279 22 105 chr4 73999788 73999998 -81630122 - Lx8 LINE L1 -480 5832 5606 8 1149 274 259 58 31 chr4 74000025 74000181 -81629939 - L1_Mm LINE L1 -598 5591 5405 1 1149 31 26 0 0 chr4 74000524 74000562 -81629558 + AT_rich Low_complexity Low_complexity 1 38 0 2 1149 968 144 5 31 chr4 74000708 74000930 -81629190 - Lx3B LINE L1 -725 6248 6033 3 1149 709 263 85 30 chr4 74000930 74001130 -81628990 - MTD LTR MaLR -208 211 1 4 1149 1223 339 101 55 chr4 74001173 74001395 -81628725 - Lx7 LINE L1 -151 7322 7109 5 1149 1252 111 16 11 chr4 74001395 74001586 -81628534 + B2_Mm1t SINE B2 2 193 0 6 1149 2898 286 73 34 chr4 74001586 74002989 -81627131 - Lx7 LINE L1 -365 7108 5621 5 1149 391 267 114 0 chr4 74004136 74004267 -81625853 + B1_Mm SINE Alu 1 146 -1 7 1149 333 0 0 0 chr4 74004555 74004592 -81625528 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 8 1149 1104 65 0 0 chr4 74004592 74004730 -81625390 - B1_Mm SINE Alu -8 139 2 9 1149 24 0 0 0 chr4 74004734 74004758 -81625362 + AT_rich Low_complexity Low_complexity 1 24 0 1 1149 437 309 85 0 chr4 74004970 74005135 -81624985 - B3 SINE B2 -37 179 1 1 1149 593 193 86 36 chr4 74006106 74006246 -81623874 - B1_Mur4 SINE Alu -1 149 3 1 1149 1146 44 0 7 chr4 74006867 74007005 -81623115 + B1_Mus2 SINE Alu 3 139 -8 1 1149 385 292 0 42 chr4 74007284 74007427 -81622693 + Lx8 LINE L1 6315 6451 -1022 1 1149 246 62 0 0 chr4 74007838 74007870 -81622250 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 1149 537 174 60 102 chr4 74007906 74007920 -81622200 - ID_B1 SINE B4 0 224 179 1 1149 922 41 0 8 chr4 74007920 74008042 -81622078 - B1_Mus1 SINE Alu -26 122 2 1 1149 537 174 60 102 chr4 74008042 74008072 -81622048 - ID_B1 SINE B4 0 178 66 1 1149 1145 37 0 0 chr4 74008466 74008602 -81621518 - B1_Mus1 SINE Alu -12 136 1 1 1149 23 0 0 0 chr4 74008661 74008684 -81621436 + AT_rich Low_complexity Low_complexity 1 23 0 1 1149 239 222 19 0 chr4 74008762 74008816 -81621304 + CT-rich Low_complexity Low_complexity 3 57 0 2 1149 319 324 72 46 chr4 74008816 74009120 -81621000 - L1MDa LINE L1 -5144 1489 1178 2 1149 375 228 39 33 chr4 74010625 74010763 -81619357 + RMER12 LTR ERVK 1072 1150 -172 2 1149 253 237 214 97 chr4 74010906 74011009 -81619111 + RMER12 LTR ERVK 1208 1322 0 2 1149 1521 148 39 0 chr4 74011011 74011267 -81618853 - Lx7 LINE L1 -894 6802 6537 2 1149 206 95 24 0 chr4 74011882 74011924 -81618196 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1149 1080 82 0 33 chr4 74011924 74012076 -81618044 - B1_Mus1 SINE Alu 0 148 2 2 1149 195 222 0 0 chr4 74012087 74012132 -81617988 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 2 1149 651 131 0 0 chr4 74012129 74012266 -81617854 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 2 1149 4391 128 48 8 chr4 74012274 74012357 -81617763 - Lx3B LINE L1 -6 6967 6861 2 1149 315 0 0 0 chr4 74012357 74012392 -81617728 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1149 4776 164 40 17 chr4 74012392 74013793 -81616327 - Lx3B LINE L1 -113 6860 5383 2 1149 1932 137 94 26 chr4 74013793 74014176 -81615944 + RLTR9E LTR ERVK 1 409 0 3 1149 4776 118 15 34 chr4 74014176 74014523 -81615597 - Lx3B LINE L1 -504 5382 5055 2 1149 1166 238 207 24 chr4 74014554 74015387 -81614733 - L1_Rod LINE L1 -4112 1735 753 3 1149 180 0 0 0 chr4 74015878 74015898 -81614222 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 3 1149 23 54 0 0 chr4 74015903 74015940 -81614180 + AT_rich Low_complexity Low_complexity 1 37 0 3 1149 191 374 112 12 chr4 74016269 74016429 -81613691 + MER5A DNA MER1_type 1 176 -13 3 1149 254 343 43 7 chr4 74016907 74017048 -81613072 + B1F2 SINE Alu 1 146 -3 3 1149 7649 45 17 2 chr4 74017236 74018672 -81611448 - L1Md_F2 LINE L1 -12 6570 5108 3 1149 4049 80 0 3 chr4 74018665 74019230 -81610890 + L1Md_F2 LINE L1 4565 5127 -756 3 1149 22 0 0 0 chr4 74020449 74020471 -81609649 + AT_rich Low_complexity Low_complexity 1 22 0 3 1149 1205 91 68 0 chr4 74020482 74020658 -81609462 - B2_Mm1t SINE B2 -4 189 2 3 1149 200 31 62 0 chr4 74020664 74020696 -81609424 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1149 533 28 14 0 chr4 74022117 74022188 -81607932 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 4 1149 183 80 0 0 chr4 74022303 74022328 -81607792 + (TAGG)n Simple_repeat Simple_repeat 3 27 0 4 1149 21 0 0 0 chr4 74022614 74022635 -81607485 + AT_rich Low_complexity Low_complexity 1 21 0 4 1149 247 240 69 20 chr4 74023057 74023159 -81606961 + L1MC4 LINE L1 7792 7898 -144 4 1149 210 273 0 0 chr4 74023467 74023522 -81606598 + T-rich Low_complexity Low_complexity 1 55 0 4 1149 1147 116 18 31 chr4 74023859 74024081 -81606039 - Lx3_Mus LINE L1 -661 6348 6130 4 1149 5175 116 82 68 chr4 74024078 74025722 -81604398 - L1_Mur1 LINE L1 -3712 2174 209 4 1149 506 299 14 7 chr4 74025743 74025888 -81604232 + RSINE1 SINE B4 3 148 -17 4 1149 401 261 183 52 chr4 74026230 74026481 -81603639 + MLT2B4 LTR ERVL 1 284 -272 4 1149 353 269 129 0 chr4 74026576 74026669 -81603451 - RSINE1 SINE B4 -17 148 44 4 1149 29 28 0 0 chr4 74027503 74027539 -81602581 + AT_rich Low_complexity Low_complexity 1 36 0 5 1149 802 309 40 7 chr4 74027571 74027867 -81602253 + Lx9 LINE L1 6357 6662 -982 5 1149 833 244 54 0 chr4 74027909 74028130 -81601990 + Lx9 LINE L1 6802 7034 -610 5 1149 22 0 0 0 chr4 74028434 74028456 -81601664 + AT_rich Low_complexity Low_complexity 1 22 0 5 1149 369 102 0 0 chr4 74028540 74028599 -81601521 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1149 405 0 0 0 chr4 74028599 74028643 -81601477 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1149 807 272 123 55 chr4 74028731 74028945 -81601175 - Lx8 LINE L1 -232 7241 7013 5 1149 456 19 0 0 chr4 74028945 74028998 -81601122 + (TCTCCC)n Simple_repeat Simple_repeat 6 58 0 5 1149 249 57 0 0 chr4 74028999 74029034 -81601086 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1149 807 272 123 55 chr4 74029034 74029288 -81600832 - Lx8 LINE L1 -461 7012 6739 5 1149 279 0 0 0 chr4 74029314 74029345 -81600775 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 5 1149 1341 25 0 0 chr4 74029345 74029502 -81600618 - B2_Mm1a SINE B2 -33 160 4 5 1149 1882 264 29 17 chr4 74029505 74030030 -81600090 - Lx8 LINE L1 -728 6745 6215 5 1149 569 285 32 125 chr4 74030255 74030678 -81599442 - L1_Mur3 LINE L1 -3395 2452 2066 6 1149 350 262 77 12 chr4 74030733 74030903 -81599217 - L1_Mur3 LINE L1 -4097 1783 1603 6 1149 192 40 0 0 chr4 74031075 74031100 -81599020 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 1149 1251 95 20 31 chr4 74031444 74031639 -81598481 - B2_Mm2 SINE B2 -2 193 1 6 1149 393 129 10 51 chr4 74032565 74032663 -81597457 - Lx LINE L1 -27 6627 6534 6 1149 254 111 0 0 chr4 74032655 74032691 -81597429 - Lx LINE L1 -644 6010 5975 6 1149 1548 163 0 0 chr4 74032696 74032966 -81597154 + L1_Mur1 LINE L1 4886 5155 -731 6 1149 520 258 258 6 chr4 74033091 74033273 -81596847 - Lx8 LINE L1 -869 6604 6377 6 1149 588 241 35 21 chr4 74033507 74033651 -81596469 - B1_Mur2 SINE Alu -3 146 1 6 1149 1301 251 89 45 chr4 74033671 74034309 -81595811 - L1_Mur3 LINE L1 -2704 3176 2511 6 1149 1895 236 64 52 chr4 74034309 74034886 -81595234 - RLTR31A_Mm LTR ERVK 0 584 1 6 1149 1051 283 57 18 chr4 74034886 74035488 -81594632 - L1_Mur3 LINE L1 -3364 2516 1892 6 1149 1742 115 27 66 chr4 74035989 74036324 -81593796 - RLTRETN_Mm LTR ERVK 0 322 1 6 1149 406 267 144 37 chr4 74036518 74036817 -81593303 + Lx8 LINE L1 7139 7469 -4 7 1149 243 287 44 33 chr4 74036837 74036927 -81593193 + MIRc SINE MIR 165 255 -13 7 1149 239 250 0 55 chr4 74037725 74037739 -81592381 + ID4 SINE ID 1 52 -31 7 1149 246 219 0 0 chr4 74037739 74037780 -81592340 + tRNA-Ala-GCA tRNA tRNA 6 46 -29 7 1149 832 84 0 63 chr4 74037797 74037988 -81592132 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 7 1149 1244 244 106 29 chr4 74038632 74039008 -81591112 + MTD LTR MaLR 1 405 -14 7 1149 407 350 0 0 chr4 74039576 74039753 -81590367 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 1149 305 196 0 18 chr4 74039763 74039820 -81590300 - HAL1-3A_ME LINE L1 -828 2030 1975 7 1149 225 197 0 0 chr4 74039840 74039901 -81590219 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1149 205 307 13 51 chr4 74039904 74039983 -81590137 - MIRb SINE MIR -76 192 117 7 1149 1182 48 0 0 chr4 74040563 74040708 -81589412 + B1_Mm SINE Alu 1 145 -2 8 1149 333 0 0 0 chr4 74040840 74040877 -81589243 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1149 225 0 0 0 chr4 74040877 74040901 -81589219 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1149 1646 43 0 14 chr4 74042281 74042495 -81587625 + L1Md_F3 LINE L1 6360 6570 -14 8 1149 186 43 0 0 chr4 74042578 74042601 -81587519 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1149 664 255 186 6 chr4 74043239 74043564 -81586556 + Lx7 LINE L1 6531 6931 -542 8 1149 1185 301 52 28 chr4 74043949 74044108 -81586012 - L1MA4A LINE L1 -367 5936 5772 8 1149 369 0 0 0 chr4 74044108 74044149 -81585971 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 1149 1151 44 0 0 chr4 74044149 74044284 -81585836 - B1_Mus1 SINE Alu -9 139 5 8 1149 1185 293 51 64 chr4 74044284 74044865 -81585255 - L1MA4A LINE L1 -532 5771 5170 8 1149 192 77 0 0 chr4 74045857 74045883 -81584237 + (TATATG)n Simple_repeat Simple_repeat 2 27 0 8 1149 580 277 66 43 chr4 74046504 74046715 -81583405 + B3 SINE B2 1 216 0 9 1149 3926 66 10 6 chr4 74047914 74048431 -81581689 - L1_Mus1 LINE L1 0 6567 6049 9 1149 2131 216 42 37 chr4 74049976 74050458 -81579662 - RMER5 LTR ERV1 -50 484 1 9 1149 21 0 0 0 chr4 74051604 74051625 -81578495 + AT_rich Low_complexity Low_complexity 1 21 0 9 1149 23 0 0 0 chr4 74051729 74051752 -81578368 + AT_rich Low_complexity Low_complexity 1 23 0 9 1149 601 269 36 58 chr4 74051941 74052305 -81577815 - RMER17C LTR ERVK -16 394 1 9 1149 445 252 176 7 chr4 74052334 74052482 -81577638 + RMER15 LTR ERVL 368 540 -35 9 1149 628 241 21 0 chr4 74054411 74054556 -81575564 + B1_Mur4 SINE Alu 1 148 -2 9 1149 396 59 0 0 chr4 74054560 74054611 -81575509 + (GGA)n Simple_repeat Simple_repeat 3 53 0 9 1149 281 284 34 68 chr4 74054659 74054776 -81575344 - RMER4B LTR ERVK -466 119 7 9 1149 570 238 0 8 chr4 74054963 74055086 -81575034 - B1_Mus1 SINE Alu -25 123 2 1 143 5264 203 69 34 chr4 74055098 74056410 -81573710 - Lx5 LINE L1 0 7050 5693 1 1150 1813 99 265 35 chr4 74056412 74056771 -81573349 - RLTR25B LTR ERVK -559 469 28 1 1150 504 0 0 0 chr4 74056779 74056835 -81573285 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1150 689 282 64 57 chr4 74057279 74057347 -81572773 + RLTR25B LTR ERVK 598 663 -440 1 1150 1132 64 0 0 chr4 74057347 74057487 -81572633 + B1_Mus1 SINE Alu 3 142 -6 1 1150 689 282 64 57 chr4 74057487 74057516 -81572604 + RLTR25B LTR ERVK 664 688 -415 1 1150 483 18 0 0 chr4 74057516 74057572 -81572548 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1150 977 178 369 21 chr4 74057572 74057879 -81572241 + RLTR25B LTR ERVK 621 1028 0 1 1150 306 291 90 48 chr4 74058815 74058981 -81571139 - L1MDa LINE L1 -6306 327 155 1 1150 580 297 108 5 chr4 74059738 74059941 -81570179 + MLT1D LTR MaLR 257 480 -25 1 1150 7399 47 8 15 chr4 74060238 74061635 -81568485 - L1Md_F3 LINE L1 -14 6570 5183 1 1150 198 0 0 0 chr4 74061738 74061760 -81568360 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1150 713 205 64 10 chr4 74062229 74062469 -81567651 - L1M3 LINE L1 -1441 4702 4441 1 1150 7176 102 6 8 chr4 74062507 74063707 -81566413 - Lx LINE L1 0 6654 5453 1 1150 1337 91 37 0 chr4 74063707 74063894 -81566226 - B2_Mm2 SINE B2 0 195 2 1 1150 4095 158 5 24 chr4 74063894 74064244 -81565876 - Lx LINE L1 -431 5452 5114 1 1150 722 252 129 20 chr4 74064248 74064512 -81565608 - L1_Rod LINE L1 -1666 4211 3895 1 1150 1165 68 0 0 chr4 74064512 74064659 -81565461 - B1_Mus1 SINE Alu -1 147 1 1 1150 722 267 169 30 chr4 74064659 74064790 -81565330 - L1_Rod LINE L1 -1953 3894 3766 1 1150 699 260 0 0 chr4 74064790 74064944 -81565176 - B3A SINE B2 -44 154 1 1 1150 632 262 52 19 chr4 74064944 74065154 -81564966 + RCHARR1 DNA MER1_type 467 683 -291 1 1150 645 225 43 5 chr4 74065625 74065813 -81564307 + RCHARR1 DNA MER1_type 703 897 -77 1 1150 1837 275 92 42 chr4 74066038 74067312 -81562808 - L1_Mur3 LINE L1 -2303 3577 2241 1 1150 1913 148 100 11 chr4 74067314 74067675 -81562445 - ORR1B1 LTR MaLR -1 393 1 1 1150 4028 199 32 11 chr4 74067675 74068543 -81561577 - ORR1B1-int LTR MaLR 0 1509 624 1 1150 1108 170 16 204 chr4 74068416 74068734 -81561386 - MT2B LTR ERVL -343 258 1 1 1150 261 315 43 48 chr4 74068734 74068841 -81561279 - L1_Rod LINE L1 -3583 2264 2162 1 1150 486 300 9 62 chr4 74068841 74069068 -81561052 - B3 SINE B2 -1 215 1 1 1150 261 315 43 48 chr4 74069068 74069147 -81560973 - L1_Rod LINE L1 -3686 2161 2079 1 1150 957 229 94 23 chr4 74069321 74069630 -81560490 - RLTR12A LTR ERVK 0 568 238 1 1150 424 286 7 67 chr4 74069638 74069788 -81560332 + MLT2B2 LTR ERVL 420 560 -2 1 1150 676 276 193 15 chr4 74071475 74071744 -81558376 + RMER15 LTR ERVL 259 575 0 1 1150 8530 260 89 36 chr4 74072102 74074283 -81555837 - L1Md_F LINE L1 -869 5008 2608 1 1150 4867 75 0 14 chr4 74074283 74074932 -81555188 - L1_Mus2 LINE L1 0 6566 5927 1 1150 8530 129 15 14 chr4 74074932 74076957 -81553163 - L1Md_F LINE L1 -3270 2613 149 1 1150 4350 161 34 107 chr4 74076966 74077261 -81552859 - L1_Mur2 LINE L1 -2461 3416 3113 1 1150 2883 66 0 21 chr4 74077261 74077647 -81552473 - L1_Mus1 LINE L1 0 6567 6190 1 1150 4350 161 34 107 chr4 74077647 74077899 -81552221 - L1_Mur2 LINE L1 -2765 3112 2981 1 1150 210 37 0 0 chr4 74077899 74077926 -81552194 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1150 2507 49 0 0 chr4 74077928 74078236 -81551884 - L1Md_F2 LINE L1 -19 6563 6256 1 1150 4350 161 34 107 chr4 74078236 74078917 -81551203 - L1_Mur2 LINE L1 -2897 2980 2274 1 1150 790 211 15 5 chr4 74078915 74079110 -81551010 - L1_Rod LINE L1 -6271 901 705 1 1150 812 194 7 0 chr4 74079228 74079367 -81550753 - B1_Mus1 SINE Alu -8 140 1 1 1150 765 200 20 60 chr4 74079377 74079627 -81550493 - L1_Rod LINE L1 -6457 715 476 1 1150 4401 16 0 0 chr4 74080533 74081026 -81549094 + MT2_Mm LTR ERVL 1 493 0 1 1150 45241 14 8 0 chr4 74081026 74086343 -81543777 + MERVL-int LTR ERVL 1 5360 -125 1 1150 351 191 46 35 chr4 74086343 74086430 -81543690 + ORR1A3-int LTR MaLR 553 640 -1323 1 1150 302 0 0 0 chr4 74086430 74086468 -81543652 + MERVL-int LTR ERVL 5448 5485 0 1 1150 4427 14 0 0 chr4 74086468 74086961 -81543159 + MT2_Mm LTR ERVL 1 493 0 1 1150 4384 73 39 0 chr4 74089019 74089604 -81540516 - L1_Mus1 LINE L1 -1 6566 5959 1 1150 186 71 0 0 chr4 74089968 74089996 -81540124 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1150 495 0 0 0 chr4 74090002 74090057 -81540063 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 1 1150 1308 79 0 0 chr4 74090069 74090247 -81539873 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1 1150 243 0 0 0 chr4 74090249 74090276 -81539844 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1 1150 5185 79 6 1 chr4 74090306 74090991 -81539129 - L1_Mus3 LINE L1 -7 6631 5944 1 1150 452 211 40 1 chr4 74091277 74091376 -81538744 + MTD LTR MaLR 1 106 -290 1 1150 2614 20 7 0 chr4 74091377 74091682 -81538438 - L1Md_A LINE L1 0 6582 6276 1 1150 36599 48 13 4 chr4 74091720 74097979 -81532141 - L1Md_T LINE L1 -1 6581 263 1 1150 412 95 0 0 chr4 74097980 74098043 -81532077 - L1Md_T LINE L1 -6291 325 263 1 1150 1324 211 55 24 chr4 74098061 74098323 -81531797 + MTD LTR MaLR 111 387 -32 1 1150 1676 185 102 58 chr4 74098323 74098685 -81531435 + ORR1C1 LTR MaLR 1 378 0 1 1150 1324 211 55 24 chr4 74098685 74098714 -81531406 + MTD LTR MaLR 388 411 -8 1 1150 696 265 63 11 chr4 74098718 74098909 -81531211 - B3 SINE B2 -14 202 2 1 1150 18205 123 46 26 chr4 74099433 74101258 -81528862 + Lx3B LINE L1 2498 4332 -1554 1 1150 745 145 17 0 chr4 74101258 74101375 -81528745 + PB1D9 SINE Alu 2 120 0 1 1150 18205 123 46 26 chr4 74101375 74102360 -81527760 + Lx3B LINE L1 4333 5272 -614 1 1150 234 0 0 0 chr4 74102360 74102386 -81527734 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1150 18205 118 52 13 chr4 74102386 74103878 -81526242 + Lx3B LINE L1 5273 6902 -71 1 1150 3575 36 70 2 chr4 74103878 74104323 -81525797 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1150 7944 117 53 11 chr4 74104323 74104391 -81525729 + Lx3B LINE L1 6903 6968 -5 1 1150 288 53 0 0 chr4 74104399 74104437 -81525683 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 1 1150 25 31 0 0 chr4 74104616 74104648 -81525472 + AT_rich Low_complexity Low_complexity 1 32 0 1 1150 4524 108 1 4 chr4 74104665 74105517 -81524603 + Lx LINE L1 5130 5976 -678 1 1150 22 35 0 0 chr4 74105626 74105655 -81524465 + AT_rich Low_complexity Low_complexity 1 29 0 1 1150 2291 289 47 88 chr4 74105945 74106952 -81523168 - RMER1C Other Other -3 1339 375 1 1150 838 356 24 10 chr4 74106965 74107416 -81522704 - RMER1C Other Other -461 881 440 1 1150 1888 231 55 38 chr4 74108038 74108561 -81521559 - RMER5 LTR ERV1 -2 532 1 1 1150 405 54 0 0 chr4 74108726 74108782 -81521338 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1150 694 171 8 0 chr4 74108800 74108923 -81521197 - RLTR14 LTR ERV1 -258 124 1 1 1150 488 306 12 12 chr4 74109374 74109536 -81520584 - RSINE1 SINE B4 0 165 4 1 1150 22 0 0 0 chr4 74109673 74109695 -81520425 + AT_rich Low_complexity Low_complexity 1 22 0 1 1150 29 78 0 0 chr4 74109794 74109858 -81520262 + AT_rich Low_complexity Low_complexity 1 64 0 1 1150 517 317 83 6 chr4 74110674 74110855 -81519265 - MER58A DNA MER1_type -19 205 11 1 1150 7318 63 5 1 chr4 74112507 74113520 -81516600 + L1_Mus2 LINE L1 5546 6562 -4 1 1150 236 28 0 53 chr4 74113871 74113909 -81516211 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 1 1150 257 0 30 0 chr4 74115420 74115453 -81514667 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1150 749 41 0 30 chr4 74115454 74115465 -81514655 - B1_Mm SINE Alu 0 147 139 1 1150 567 0 0 0 chr4 74115465 74115528 -81514592 + (TGG)n Simple_repeat Simple_repeat 2 64 0 1 1150 749 41 0 30 chr4 74115528 74115616 -81514504 - B1_Mm SINE Alu -9 138 51 1 1150 668 74 0 10 chr4 74116909 74117005 -81513115 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 1 1150 862 153 19 38 chr4 74117005 74117269 -81512851 + CT-rich Low_complexity Low_complexity 1 259 0 1 1150 1649 186 24 0 chr4 74117286 74117581 -81512539 - Lx3C LINE L1 -2 6974 6673 1 1150 261 140 0 0 chr4 74118368 74118425 -81511695 + (T)n Simple_repeat Simple_repeat 1 57 0 1 1150 1215 54 0 0 chr4 74118427 74118574 -81511546 - B1_Mm SINE Alu 0 147 1 1 1150 310 243 0 39 chr4 74118691 74118768 -81511352 - MTD LTR MaLR -347 74 1 1 1150 857 205 44 41 chr4 74118768 74119024 -81511096 - MTD-int LTR MaLR 0 1258 1001 1 1150 507 45 0 0 chr4 74119024 74119090 -81511030 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 1 1150 857 205 44 41 chr4 74119090 74119103 -81511017 - MTD-int LTR MaLR -258 1000 988 1 1150 597 64 0 0 chr4 74119115 74119193 -81510927 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 1150 238 245 0 102 chr4 74119224 74119239 -81510881 - B1_Mur4 SINE Alu -95 55 46 1 1150 3127 48 8 8 chr4 74119239 74119635 -81510485 + MTA_Mm LTR MaLR 1 396 0 1 1150 238 245 0 102 chr4 74119635 74119678 -81510442 - B1_Mur4 SINE Alu -105 45 3 1 1150 398 138 69 0 chr4 74119683 74119770 -81510350 - MTD-int LTR MaLR -260 998 906 1 1150 773 230 95 56 chr4 74119760 74120071 -81510049 - MTD-int LTR MaLR -910 348 2 1 1150 1836 213 65 10 chr4 74120076 74120461 -81509659 - MTD LTR MaLR -8 411 6 1 1150 267 133 0 0 chr4 74121555 74121600 -81508520 + (GAA)n Simple_repeat Simple_repeat 1 45 0 1 1150 428 35 17 0 chr4 74121601 74121659 -81508461 + (TAG)n Simple_repeat Simple_repeat 1 59 0 1 1150 30 0 0 0 chr4 74122819 74122849 -81507271 + AT_rich Low_complexity Low_complexity 1 30 0 1 1150 249 192 0 0 chr4 74123054 74123106 -81507014 - Lx8 LINE L1 -7 7466 7415 1 1150 1374 308 43 25 chr4 74123138 74123738 -81506382 - Lx8 LINE L1 -626 6847 6237 1 1150 267 327 20 0 chr4 74123738 74123839 -81506281 - Lx8 LINE L1 -447 7026 6924 1 1150 8879 157 16 39 chr4 74123847 74125653 -81504467 - L1_Mur2 LINE L1 -135 5742 3978 1 1150 816 155 7 0 chr4 74125719 74125861 -81504259 - URR1B DNA MER1_type 0 225 83 1 1150 356 258 44 56 chr4 74125861 74125872 -81504248 + CYRA11_Mm Unknown Y-chromosome 215 322 -295 1 1150 488 307 124 5 chr4 74125909 74126102 -81504018 + MT2A LTR ERVL 318 533 0 1 1150 750 301 220 14 chr4 74126108 74126627 -81503493 - Charlie12 DNA MER1_type -1176 1697 1072 1 1150 1882 231 68 28 chr4 74126627 74127241 -81502879 + Lx9 LINE L1 7006 7644 0 1 1150 648 266 118 91 chr4 74127249 74127337 -81502783 - Charlie12 DNA MER1_type -1790 1083 1020 1 1150 1091 76 14 0 chr4 74127337 74127482 -81502638 - B1_Mus2 SINE Alu 0 147 1 1 1150 648 266 118 91 chr4 74127482 74127832 -81502288 - Charlie12 DNA MER1_type -1854 1019 633 1 1150 408 20 0 0 chr4 74128087 74128136 -81501984 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1150 23 0 0 0 chr4 74128149 74128172 -81501948 + AT_rich Low_complexity Low_complexity 1 23 0 1 1150 533 248 114 9 chr4 74128193 74128421 -81501699 + L1MD1 LINE L1 5311 5562 -797 1 1150 464 200 22 11 chr4 74128456 74128547 -81501573 - PB1D10 SINE Alu 0 117 26 1 1150 382 262 66 0 chr4 74128593 74128715 -81501405 + L1MD1 LINE L1 5609 5738 -504 1 1150 384 216 54 54 chr4 74128786 74128952 -81501168 + L1MD1 LINE L1 6055 6220 -22 1 1150 729 224 7 0 chr4 74129594 74129737 -81500383 + B1_Mur4 SINE Alu 2 145 -5 1 1150 430 279 93 22 chr4 74129748 74129887 -81500233 - MER21B LTR ERV1 -617 246 98 1 1150 424 278 17 17 chr4 74130434 74130551 -81499569 + RMER5 LTR ERV1 13 129 -405 1 1150 21 36 0 0 chr4 74130584 74130612 -81499508 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 476 234 75 7 chr4 74130625 74130771 -81499349 - Lx6 LINE L1 -10 7450 7295 1 1150 495 95 26 5 chr4 74130773 74130859 -81499261 - L1_Mur3 LINE L1 -107 5773 5659 2 1150 1461 206 0 14 chr4 74131083 74131373 -81498747 + RMER5 LTR ERV1 10 295 -239 2 1150 318 305 62 34 chr4 74131390 74131536 -81498584 + L1MDa LINE L1 1451 1600 -4939 2 1150 432 271 69 0 chr4 74131561 74131749 -81498371 + L1MDa LINE L1 1775 1975 -4658 2 1150 189 0 0 0 chr4 74131886 74131907 -81498213 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1150 406 242 204 30 chr4 74131915 74132047 -81498073 - RSINE1 SINE B4 -10 155 1 2 1150 34138 68 1 17 chr4 74132105 74138277 -81491843 - L1Md_F2 LINE L1 -2 6580 510 2 1150 368 327 41 22 chr4 74138290 74138559 -81491561 - L1ME2z LINE L1 -277 6167 5894 2 1150 263 309 76 40 chr4 74138946 74139169 -81490951 + L1MDa LINE L1 4237 4467 -2070 2 1150 324 0 0 0 chr4 74139311 74139347 -81490773 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 1150 290 130 19 0 chr4 74139512 74139566 -81490554 - L1MC LINE L1 -633 5711 5657 2 1150 792 276 88 10 chr4 74139611 74140218 -81489902 - L1MC LINE L1 -831 5502 4848 2 1150 659 223 83 14 chr4 74140240 74140458 -81489662 - L1MC LINE L1 -1446 4700 4468 2 1150 605 282 57 130 chr4 74140492 74140899 -81489221 + MTE2a LTR MaLR 1 377 -2 2 1150 640 305 104 58 chr4 74140925 74141570 -81488550 + MTE2a-int LTR MaLR 4 1006 -574 2 1150 8550 234 46 82 chr4 74141586 74145033 -81485087 - L1_Rod LINE L1 -486 5361 2037 2 1150 187 122 89 0 chr4 74145045 74145135 -81484985 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1150 300 200 15 0 chr4 74145136 74145201 -81484919 - L1_Rod LINE L1 -3821 2026 1961 2 1150 34 42 0 0 chr4 74145201 74145249 -81484871 + AT_rich Low_complexity Low_complexity 1 48 0 2 1150 39100 13 4 6 chr4 74145259 74152081 -81478039 - L1Md_A LINE L1 -1 6581 1 2 1150 788 283 64 60 chr4 74152085 74152455 -81477665 - L1_Rod LINE L1 -3873 1974 1600 2 1150 1022 106 0 11 chr4 74152455 74152637 -81477483 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 1150 2408 264 52 21 chr4 74152637 74153621 -81476499 - L1_Rod LINE L1 -4248 1599 583 2 1150 337 255 181 14 chr4 74153647 74153862 -81476258 - L1_Rod LINE L1 -6846 762 512 2 1150 2545 44 13 0 chr4 74153928 74154245 -81475875 + L1_Mus1 LINE L1 6247 6567 0 2 1150 248 248 0 28 chr4 74154274 74154382 -81475738 - L1MC LINE L1 -2202 3944 3840 2 1150 219 186 0 0 chr4 74154437 74154480 -81475640 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 2 1150 1374 216 53 33 chr4 74154580 74154939 -81475181 - Lx5 LINE L1 -3 7047 6682 2 1150 774 242 34 11 chr4 74155132 74155395 -81474725 + L1MC LINE L1 3294 3562 -2584 2 1150 1285 256 130 50 chr4 74155373 74156026 -81474094 + Lx9 LINE L1 6924 7628 -16 2 1150 531 0 0 0 chr4 74157552 74157611 -81472509 + (TCC)n Simple_repeat Simple_repeat 3 61 0 2 1150 421 198 168 25 chr4 74157615 74157734 -81472386 - B1F1 SINE Alu -13 136 1 2 1150 373 287 128 59 chr4 74157978 74158282 -81471838 + MLT1B LTR MaLR 9 333 -57 2 1150 288 53 0 0 chr4 74158399 74158437 -81471683 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1150 3790 149 114 51 chr4 74158769 74159084 -81471036 + RMER17B LTR ERVK 15 321 -637 2 1150 1053 99 0 0 chr4 74159084 74159236 -81470884 + (TTTC)n Simple_repeat Simple_repeat 3 154 0 2 1150 1047 96 0 0 chr4 74159236 74159371 -81470749 - B1_Mus1 SINE Alu -12 136 2 2 1150 3790 149 114 51 chr4 74159371 74159942 -81470178 + RMER17B LTR ERVK 322 957 -1 2 1150 396 0 0 0 chr4 74161358 74161402 -81468718 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1150 11635 100 19 9 chr4 74161411 74163961 -81466159 + L1VL4 LINE L1 191 2759 -800 2 1150 501 276 227 16 chr4 74163961 74164208 -81465912 + MTC LTR MaLR 71 369 -52 2 1150 2085 159 20 8 chr4 74164201 74164556 -81465564 + RMER4B LTR ERVK 28 386 -199 2 1150 219 69 0 0 chr4 74164764 74164793 -81465327 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1150 453 19 0 0 chr4 74164799 74164853 -81465267 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1150 3927 82 5 0 chr4 74165088 74165758 -81464362 - L1_Mus1 LINE L1 -431 6136 5464 2 1150 2918 84 0 42 chr4 74165758 74166182 -81463938 + L1_Mus1 LINE L1 6162 6567 0 2 1150 477 291 89 75 chr4 74166301 74166583 -81463537 + B4A SINE B4 1 286 -6 2 1150 387 296 59 22 chr4 74166911 74167046 -81463074 - B1_Mur4 SINE Alu -2 148 9 2 1150 1979 74 11 7 chr4 74167716 74167988 -81462132 - L1Md_F2 LINE L1 0 6582 6310 2 1150 609 306 41 6 chr4 74168019 74168190 -81461930 - B3 SINE B2 -38 178 2 2 1150 1134 195 28 5 chr4 74169195 74169406 -81460714 - URR1B DNA MER1_type -1 224 9 2 1150 13302 127 41 27 chr4 74169528 74171850 -81458270 + L1_Mur1 LINE L1 10 2620 -3266 2 1150 3436 86 0 2 chr4 74171850 74172306 -81457814 - L1_Mus1 LINE L1 -2 6565 6111 2 1150 13302 101 17 18 chr4 74172306 74173025 -81457095 + L1_Mur1 LINE L1 2621 3370 -2516 2 1150 2020 145 3 3 chr4 74173025 74173336 -81456784 - RLTR10E LTR ERVK 0 311 1 2 1150 3840 115 14 1 chr4 74173336 74174012 -81456108 - IAPEY3-int LTR ERVK 0 7680 6965 2 1150 1368 103 112 0 chr4 74174012 74174236 -81455884 - IAP-d-int LTR ERVK -1287 5255 5007 2 1150 343 158 0 0 chr4 74174236 74174293 -81455827 - IAP-d-int LTR ERVK -6039 503 447 2 1150 296 312 25 63 chr4 74174311 74174643 -81455477 - IAPEY3-int LTR ERVK -5530 1012 822 2 1150 273 178 0 0 chr4 74174736 74174781 -81455339 - RMER16-int LTR ERVK -993 994 950 2 1150 1329 185 129 12 chr4 74174775 74175210 -81454910 - RMER16-int LTR ERVK -5474 663 192 2 1150 282 172 0 0 chr4 74175193 74175257 -81454863 - MMERVK10C-int LTR ERVK -6735 846 783 2 1150 34186 49 1 16 chr4 74175257 74180456 -81449664 + L1Md_A LINE L1 471 5586 -297 2 1150 8159 42 1 5 chr4 74180456 74181455 -81448665 + L1Md_A LINE L1 5587 6581 -1 2 1150 298 42 20 20 chr4 74181459 74181508 -81448612 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1150 15915 97 47 9 chr4 74181509 74184870 -81445250 + Lx3A LINE L1 3470 6973 -8 2 1150 22 0 0 0 chr4 74184878 74184900 -81445220 + AT_rich Low_complexity Low_complexity 1 22 0 2 1150 570 233 35 0 chr4 74185131 74185259 -81444861 + B1_Mur4 SINE Alu 7 148 -1 2 1150 2217 250 126 56 chr4 74185298 74186051 -81444069 + RMER13A LTR ERVK 4 809 -51 2 1150 502 101 67 0 chr4 74186330 74186419 -81443701 - L1Md_F2 LINE L1 0 6582 6488 2 143 5049 50 0 0 chr4 74186419 74187056 -81443064 + L1Md_F2 LINE L1 5797 6433 -149 2 1151 301 361 40 34 chr4 74187057 74187206 -81442914 + MIRb SINE MIR 13 162 -106 2 1151 260 244 8 23 chr4 74187305 74187393 -81442727 + L1_Mur1 LINE L1 672 831 -6151 2 1151 3056 167 113 26 chr4 74187865 74188418 -81441702 + L1_Mur1 LINE L1 865 1494 -2418 2 1151 1108 109 0 0 chr4 74188418 74188565 -81441555 + B1_Mus2 SINE Alu 1 147 0 2 1151 3056 147 21 52 chr4 74188565 74188936 -81441184 + L1_Mur1 LINE L1 1495 1838 -2074 2 1151 24437 108 35 5 chr4 74188932 74193550 -81436570 - L1Md_F LINE L1 -737 5146 386 2 1151 12333 165 31 15 chr4 74193546 74193684 -81436436 + Lx2B LINE L1 3353 3482 -2395 2 1151 396 0 0 0 chr4 74193684 74193728 -81436392 + (CAAAG)n Simple_repeat Simple_repeat 2 45 0 2 1151 12333 167 31 14 chr4 74193728 74196321 -81433799 + Lx2B LINE L1 3483 6138 -862 2 1151 250 208 0 19 chr4 74196321 74196375 -81433745 - Lx2B LINE L1 -641 6359 6307 2 1151 2569 215 62 8 chr4 74196371 74196982 -81433138 + Lx2B LINE L1 6351 6994 -6 2 1151 321 183 32 32 chr4 74196985 74197109 -81433011 - Lx9 LINE L1 -1 7643 7520 2 1151 305 252 19 0 chr4 74197159 74197262 -81432858 - L1_Rod LINE L1 -4008 1839 1735 2 1151 1263 151 79 3 chr4 74197258 74197425 -81432695 - L1_Rod LINE L1 -4232 1615 1443 2 1151 375 23 0 0 chr4 74197425 74197469 -81432651 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2 1151 1263 151 79 3 chr4 74197469 74197593 -81432527 - L1_Rod LINE L1 -4405 1442 1304 2 1151 2836 95 26 7 chr4 74197630 74198056 -81432064 - L1_Mus3 LINE L1 -4 6634 6201 2 1151 2073 219 40 4 chr4 74198060 74198583 -81431537 - L1_Rod LINE L1 -6300 1308 767 2 1151 1203 211 158 18 chr4 74198988 74199316 -81430804 - ORR1D1 LTR MaLR 0 374 1 2 1151 455 277 118 34 chr4 74199349 74199611 -81430509 - L1MB5 LINE L1 0 6174 5891 2 1151 369 0 0 0 chr4 74199618 74199659 -81430461 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1151 306 67 0 0 chr4 74200541 74200586 -81429534 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1151 342 0 0 0 chr4 74200971 74201009 -81429111 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1151 592 327 35 35 chr4 74201013 74201298 -81428822 - B4A SINE B4 -7 285 1 2 1151 247 396 69 23 chr4 74201509 74201682 -81428438 - MLT1J LTR MaLR -103 409 229 2 1151 7623 40 14 2 chr4 74201710 74202896 -81427224 - L1Md_F3 LINE L1 0 6584 5384 2 1151 3143 272 92 14 chr4 74204074 74204692 -81425428 + L1_Rod LINE L1 758 1437 -4410 2 1151 249 57 0 0 chr4 74204692 74204727 -81425393 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1151 3143 247 109 23 chr4 74204727 74205804 -81424316 + L1_Rod LINE L1 1438 2604 -3243 2 1151 295 262 27 34 chr4 74205831 74205977 -81424143 + L1_Rod LINE L1 2836 2980 -2867 2 1151 32 57 0 0 chr4 74205992 74206045 -81424075 + AT_rich Low_complexity Low_complexity 1 53 0 2 1151 253 321 132 0 chr4 74206252 74206358 -81423762 - Lx7 LINE L1 -388 7308 7189 2 1151 1904 249 130 3 chr4 74206423 74207114 -81423006 - Lx6 LINE L1 -169 7291 6513 2 1151 3657 221 31 4 chr4 74207147 74207920 -81422200 - Lx5 LINE L1 0 7050 6257 2 1151 230 212 0 0 chr4 74208011 74208077 -81422043 + L1_Mur3 LINE L1 3060 3125 -2755 2 1151 2900 192 97 42 chr4 74208058 74208987 -81421133 + Lx5 LINE L1 5894 6933 -117 2 1151 3249 249 81 72 chr4 74208985 74210769 -81419351 + L1_Rod LINE L1 3423 5222 -625 2 1151 1470 218 64 6 chr4 74210759 74211105 -81419015 + Lx9 LINE L1 7028 7393 -251 2 1151 2092 221 44 2 chr4 74211123 74211582 -81418538 + Lx5 LINE L1 6193 6670 -380 2 1151 2308 137 10 28 chr4 74211562 74211952 -81418168 - Lx4A LINE L1 -118 6940 6558 2 1151 3329 153 10 39 chr4 74211952 74212542 -81417578 + Lx4A LINE L1 6484 7056 -2 2 1151 513 269 164 10 chr4 74213983 74214141 -81415979 + B3A SINE B2 12 182 -34 2 1151 234 225 0 0 chr4 74214309 74214349 -81415771 + G-rich Low_complexity Low_complexity 5 44 0 2 1151 1534 180 40 73 chr4 74215625 74215996 -81414124 - ORR1B2 LTR MaLR -8 359 1 2 1151 723 108 0 0 chr4 74218615 74218726 -81411394 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 2 1151 4723 27 2 0 chr4 74218883 74219435 -81410685 + L1Md_F3 LINE L1 6015 6567 -17 2 1151 468 0 0 0 chr4 74219728 74219780 -81410340 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 2 1151 354 182 45 0 chr4 74219780 74219868 -81410252 - Lx9 LINE L1 -28 7616 7525 2 1151 1557 194 77 0 chr4 74219997 74220347 -81409773 + Lx9 LINE L1 7088 7464 -180 2 1151 404 191 35 0 chr4 74220360 74220475 -81409645 + Lx9 LINE L1 7525 7643 -1 2 1151 4713 89 1 17 chr4 74220534 74221187 -81408933 + L1_Mus2 LINE L1 5924 6566 0 2 1151 201 181 40 69 chr4 74221301 74221402 -81408718 + A-rich Low_complexity Low_complexity 2 99 0 2 1151 1494 63 0 0 chr4 74221435 74221626 -81408494 + L1_Mus1 LINE L1 6376 6566 -1 2 1151 1450 290 8 31 chr4 74221634 74222114 -81408006 - Lx7 LINE L1 -456 7240 6772 2 1151 843 268 91 12 chr4 74222115 74222368 -81407752 + ORR1D2 LTR MaLR 98 370 0 2 1151 27 73 0 0 chr4 74222427 74222482 -81407638 + AT_rich Low_complexity Low_complexity 1 55 0 2 1151 488 199 16 20 chr4 74222726 74222875 -81407245 + L1MC5 LINE L1 7107 7256 -786 2 1151 260 275 107 65 chr4 74223086 74223347 -81406773 + L1MC5 LINE L1 7586 7857 -104 2 1151 329 332 48 16 chr4 74223429 74223677 -81406443 + L1VL4 LINE L1 139 394 -5908 2 1151 2790 69 7 92 chr4 74223671 74224116 -81406004 - L1_Mus2 LINE L1 -573 5993 5587 2 1151 474 185 28 0 chr4 74224125 74224233 -81405887 - L1_Rod LINE L1 -6484 688 578 2 1151 2479 98 46 0 chr4 74224463 74224829 -81405291 + L1_Mus4 LINE L1 6249 6631 -5 3 1151 1464 281 54 163 chr4 74225042 74225355 -81404765 - RMER1C Other Other -8 1334 1019 3 1151 2948 71 2 30 chr4 74225355 74225760 -81404360 - L1_Mus2 LINE L1 0 6566 6173 3 1151 1464 281 54 163 chr4 74225760 74226266 -81403854 - RMER1C Other Other -324 1018 605 3 1151 3798 68 51 0 chr4 74226398 74226885 -81403235 + RLTR1B LTR ERV1 1 512 0 3 1151 540 285 22 50 chr4 74227065 74227246 -81402874 - RMER1C Other Other -1156 186 11 3 1151 24 0 0 0 chr4 74227491 74227515 -81402605 + AT_rich Low_complexity Low_complexity 1 24 0 3 1151 6987 78 30 1 chr4 74227515 74228501 -81401619 - L1_Mus2 LINE L1 0 6566 5568 3 1151 6047 61 12 9 chr4 74228672 74229477 -81400643 - RLTR13C2 LTR ERVK 0 808 1 3 1151 4783 56 3 0 chr4 74229658 74230243 -81399877 + LTRIS_Mus LTR ERV1 1 587 0 3 1151 24 0 0 0 chr4 74230340 74230364 -81399756 + AT_rich Low_complexity Low_complexity 1 24 0 3 1151 287 200 122 24 chr4 74230427 74230509 -81399611 + MER33 DNA MER1_type 27 116 -208 3 1151 309 51 0 0 chr4 74230602 74230641 -81399479 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 3 1151 21 0 0 0 chr4 74230646 74230667 -81399453 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 2881 194 16 26 chr4 74230710 74231324 -81398796 - L1_Mur3 LINE L1 -830 5047 4440 3 1151 1227 319 67 84 chr4 74231339 74231817 -81398303 - L1_Mur3 LINE L1 -6504 1224 748 3 1151 309 82 0 0 chr4 74231817 74231866 -81398254 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 1151 603 0 0 0 chr4 74231867 74231934 -81398186 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1151 1227 319 67 84 chr4 74231934 74232637 -81397483 - L1_Mur3 LINE L1 -6981 747 61 3 1151 805 172 53 21 chr4 74233880 74234070 -81396050 + Lx9 LINE L1 7423 7618 -26 3 1151 1023 69 0 0 chr4 74234172 74234303 -81395817 - B1_Mm SINE Alu -16 131 1 3 1151 2094 123 7 0 chr4 74234514 74234822 -81395298 - MT2B LTR ERVL -291 310 1 3 1151 1622 216 49 32 chr4 74234822 74235185 -81394935 + ORR1C1-int LTR MaLR 1037 1406 -103 3 1151 1521 158 45 4 chr4 74235182 74235448 -81394672 + ORR1C1 LTR MaLR 85 361 -17 3 1151 276 30 0 0 chr4 74235450 74235483 -81394637 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1151 4208 93 44 40 chr4 74235484 74236168 -81393952 + RMER17A-int LTR ERVK 326 1341 -387 3 1151 3054 172 68 36 chr4 74236168 74236946 -81393174 + RMER17D LTR ERVK 85 887 -2 3 1151 432 0 0 0 chr4 74236946 74236994 -81393126 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1151 22 56 0 0 chr4 74238771 74238807 -81391313 + AT_rich Low_complexity Low_complexity 1 36 0 3 1151 1704 194 98 6 chr4 74239690 74240048 -81390072 - Lx9 LINE L1 -240 7404 7014 3 1151 255 125 0 0 chr4 74240093 74240133 -81389987 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1151 847 214 94 0 chr4 74240419 74240468 -81389652 - B3 SINE B2 -5 211 163 3 1151 635 57 0 11 chr4 74240468 74240557 -81389563 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1151 847 214 94 0 chr4 74240557 74240699 -81389421 - B3 SINE B2 -54 162 4 3 1151 1448 176 191 3 chr4 74240982 74241285 -81388835 - ORR1B2 LTR MaLR -7 360 1 3 1151 316 250 0 0 chr4 74241290 74241350 -81388770 - Lx8 LINE L1 -151 7322 7263 3 1151 351 362 84 58 chr4 74241352 74241663 -81388457 - MER21B LTR ERV1 -98 765 447 3 1151 3059 74 0 0 chr4 74241916 74242309 -81387811 + L1Md_F2 LINE L1 5192 5584 -299 3 1151 7876 48 2 10 chr4 74242312 74243314 -81386806 + L1Md_F2 LINE L1 5588 6581 -1 3 1151 386 354 38 8 chr4 74243326 74243457 -81386663 - B4A SINE B4 -127 165 31 3 1151 576 361 68 16 chr4 74243557 74243864 -81386256 + MLT1A LTR MaLR 52 374 0 3 1151 333 0 0 0 chr4 74244686 74244723 -81385397 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1151 39275 29 7 7 chr4 74245384 74251521 -81378599 - L1Md_T LINE L1 -2 6580 440 3 1151 257 219 15 30 chr4 74252447 74252513 -81377607 - MLT1A1 LTR MaLR -23 385 321 3 1151 1688 188 34 79 chr4 74252988 74253113 -81377007 + MTC LTR MaLR 85 209 -212 3 1151 1202 84 96 0 chr4 74253113 74253291 -81376829 + B2_Mm2 SINE B2 1 195 0 3 1151 1688 188 34 79 chr4 74253291 74253518 -81376602 + MTC LTR MaLR 210 421 0 3 1151 203 184 0 0 chr4 74255326 74255364 -81374756 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1151 315 0 0 0 chr4 74255547 74255582 -81374538 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1151 457 255 0 0 chr4 74255600 74255702 -81374418 + B1F SINE Alu 48 149 0 3 1151 275 282 117 0 chr4 74255804 74255907 -81374213 + MIR SINE MIR 143 257 -5 3 1151 21 0 0 0 chr4 74257526 74257547 -81372573 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 680 191 17 69 chr4 74257701 74257875 -81372245 - URR1B DNA MER1_type -2 223 59 3 1151 1131 68 0 7 chr4 74257999 74258146 -81371974 + B1_Mm SINE Alu 1 146 -1 3 1151 303 49 0 0 chr4 74258147 74258188 -81371932 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 3 1151 357 240 31 0 chr4 74259799 74259895 -81370225 + L1MA5A LINE L1 5733 5831 -466 3 1151 238 205 13 13 chr4 74259932 74260011 -81370109 + GA-rich Low_complexity Low_complexity 2 80 0 3 1151 657 305 147 27 chr4 74260181 74260424 -81369696 - L1ME1 LINE L1 -189 5990 5734 3 1151 270 0 0 0 chr4 74260424 74260454 -81369666 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1151 657 305 147 27 chr4 74260454 74260809 -81369311 - L1ME1 LINE L1 -446 5733 5320 3 1151 243 61 0 0 chr4 74261471 74261504 -81368616 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1151 754 298 67 4 chr4 74262930 74263183 -81366937 + Lx9 LINE L1 6285 6553 -1091 3 1151 1404 173 7 13 chr4 74263222 74263520 -81366600 + L1_Mur2 LINE L1 1522 1817 -4060 3 1151 3649 200 85 18 chr4 74263523 74264311 -81365809 + RLTR25B LTR ERVK 3 843 -185 3 1151 634 237 115 115 chr4 74264583 74264727 -81365393 + RLTR25B LTR ERVK 741 879 -149 3 1151 245 29 29 0 chr4 74264727 74264761 -81365359 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1151 189 0 0 0 chr4 74264761 74264781 -81365339 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1151 634 237 115 115 chr4 74264781 74264921 -81365199 + RLTR25B LTR ERVK 880 1025 -3 3 1151 6188 181 137 9 chr4 74264922 74266392 -81363728 + L1_Mur2 LINE L1 1838 3495 -2382 3 1151 22 56 0 0 chr4 74266686 74266722 -81363398 + AT_rich Low_complexity Low_complexity 1 36 0 3 1151 2524 161 4 68 chr4 74266845 74266981 -81363139 + L1_Mur2 LINE L1 4544 4652 -1225 3 1151 3266 90 10 38 chr4 74266981 74267480 -81362640 + Lx LINE L1 6165 6649 -5 3 1151 2524 161 4 68 chr4 74267480 74267903 -81362217 + L1_Mur2 LINE L1 4653 5067 -810 3 1151 216 0 0 0 chr4 74268050 74268074 -81362046 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1151 585 0 0 0 chr4 74268074 74268139 -81361981 + (GGA)n Simple_repeat Simple_repeat 2 66 0 3 1151 387 0 0 0 chr4 74269776 74269819 -81360301 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1151 880 173 6 6 chr4 74269984 74270164 -81359956 + CT-rich Low_complexity Low_complexity 1 180 0 3 1151 507 17 0 0 chr4 74270930 74270990 -81359130 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1151 1514 331 83 40 chr4 74270990 74271965 -81358155 + Lx8 LINE L1 6290 7306 -167 3 1151 399 283 58 22 chr4 74271976 74272200 -81357920 - L1_Rod LINE L1 -2600 3247 3016 3 1151 4313 237 86 42 chr4 74272245 74273432 -81356688 - Lx7 LINE L1 0 7696 6458 3 1151 1531 231 55 2 chr4 74273434 74273885 -81356235 - L1_Rod LINE L1 -3284 2563 2089 3 1151 2874 315 31 22 chr4 74274140 74275211 -81354909 + Lx9 LINE L1 6318 7397 -247 3 1151 1700 146 79 10 chr4 74275213 74275517 -81354603 + ORR1A4 LTR MaLR 3 327 -2 3 1151 3314 197 40 58 chr4 74275522 74276270 -81353850 + ORR1A4-int LTR MaLR 28 762 -1201 3 1151 1075 218 72 58 chr4 74276096 74276374 -81353746 + MT2B LTR ERVL 6 287 -314 3 1151 414 235 7 0 chr4 74276334 74276347 -81353773 + ORR1A4-int LTR MaLR 718 766 -1197 3 1151 495 239 53 0 chr4 74276347 74276460 -81353660 + B1_Mus2 SINE Alu 3 121 -26 3 1151 414 235 7 0 chr4 74276460 74276483 -81353637 + ORR1A4-int LTR MaLR 767 867 -1096 3 1151 1310 155 65 0 chr4 74276501 74276733 -81353387 + L1_Mur1 LINE L1 5005 5251 -635 3 1151 2302 92 50 0 chr4 74276723 74277061 -81353059 + L1_Mus4 LINE L1 5735 6089 -547 3 1151 1531 103 0 0 chr4 74277058 74277253 -81352867 - Lx LINE L1 -403 6251 6057 3 1151 823 304 82 10 chr4 74277542 74277834 -81352286 - Kanga11a DNA Tc2 -274 696 384 3 1151 489 34 0 0 chr4 74278336 74278395 -81351725 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1151 180 176 0 0 chr4 74279939 74279973 -81350147 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1151 6251 45 16 1 chr4 74280289 74281063 -81349057 + L1Md_F3 LINE L1 5786 6570 -14 3 1151 1562 244 90 58 chr4 74281598 74282317 -81347803 + RMER1B Other Other 18 505 -561 3 1151 2565 275 106 18 chr4 74282368 74283306 -81346814 + RMER1A Other Other 1 1020 -10 3 1151 426 20 0 0 chr4 74283307 74283358 -81346762 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1151 39439 5 0 0 chr4 74283513 74289867 -81340253 - L1Md_A LINE L1 0 6582 227 3 1151 22 88 0 0 chr4 74291115 74291172 -81338948 + AT_rich Low_complexity Low_complexity 1 57 0 3 1151 19753 25 0 2 chr4 74291174 74294298 -81335822 - L1Md_A LINE L1 0 6582 3466 3 1151 5471 76 5 7 chr4 74294292 74295104 -81335016 - L1Md_A LINE L1 -5424 1210 440 3 1151 7116 84 1 1 chr4 74295104 74296207 -81333913 - L1_Mus1 LINE L1 -9 6558 5455 3 1151 3340 58 0 0 chr4 74296194 74296628 -81333492 - L1Md_F2 LINE L1 -510 6072 5639 3 1151 816 63 0 0 chr4 74296628 74296739 -81333381 - L1_Mm LINE L1 -1757 4126 4016 3 1151 3740 135 9 2 chr4 74296740 74297378 -81332742 - L1VL2 LINE L1 -466 3149 2507 3 1151 3044 150 78 5 chr4 74297373 74298240 -81331880 - L1VL2 LINE L1 -2095 1520 557 3 1151 22 0 0 0 chr4 74298649 74298671 -81331449 + AT_rich Low_complexity Low_complexity 1 22 0 3 1151 21 0 0 0 chr4 74299261 74299282 -81330838 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 653 308 32 10 chr4 74299542 74299850 -81330270 - Lx7 LINE L1 -1778 5918 5604 3 1151 310 335 16 27 chr4 74299984 74300168 -81329952 + MT2A LTR ERVL 336 517 -16 3 1151 1012 186 26 0 chr4 74300178 74300371 -81329749 + URR1A DNA MER1_type 29 226 0 3 1151 270 0 0 0 chr4 74300462 74300492 -81329628 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3 1151 31894 65 10 43 chr4 74300597 74307103 -81323017 - L1Md_F2 LINE L1 -3 6579 301 3 1151 346 200 0 0 chr4 74307101 74307171 -81322949 - L1Md_F LINE L1 -5986 533 464 3 1151 614 215 15 8 chr4 74307182 74307313 -81322807 - MT2C_Mm LTR ERVL -78 397 266 3 1151 639 291 53 28 chr4 74307319 74307384 -81322736 - L1M2 LINE L1 -1097 5046 4979 3 1151 300 27 0 0 chr4 74307384 74307421 -81322699 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1151 639 291 53 28 chr4 74307421 74307786 -81322334 - L1M2 LINE L1 -1165 4978 4605 3 1151 861 273 46 0 chr4 74307799 74307993 -81322127 - B3 SINE B2 -6 210 8 4 1151 444 294 30 35 chr4 74308727 74308896 -81321224 + MIRb SINE MIR 24 191 -77 4 1151 37576 24 1 7 chr4 74311740 74317205 -81312915 - L1Md_A LINE L1 -12 6570 1141 4 143 5650 57 12 4 chr4 74317182 74317960 -81312160 - L1Md_A LINE L1 -5519 1205 422 4 1152 185 0 0 39 chr4 74318324 74318350 -81311770 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1152 577 270 51 0 chr4 74318585 74318722 -81311398 - B1F SINE Alu -5 144 1 4 1152 1845 196 0 69 chr4 74319110 74319489 -81310631 + ORR1B1 LTR MaLR 42 394 0 4 1152 810 58 0 0 chr4 74319942 74320046 -81310074 + (TC)n Simple_repeat Simple_repeat 2 105 0 4 1152 3098 164 23 23 chr4 74320104 74320717 -81309403 + Lx4B LINE L1 5982 6594 -464 4 1152 701 172 17 17 chr4 74320731 74320903 -81309217 + Lx4B LINE L1 6866 7037 -21 4 1152 189 0 0 0 chr4 74320903 74320924 -81309196 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4 1152 528 214 13 31 chr4 74321443 74321602 -81308518 + L1VL1 LINE L1 120 275 -6147 4 1152 236 296 11 0 chr4 74321615 74321703 -81308417 + L1Md_F LINE L1 235 323 -6196 4 1152 540 257 367 0 chr4 74321705 74321942 -81308178 + L1Md_F3 LINE L1 309 632 -5987 4 1152 246 125 0 0 chr4 74321943 74321983 -81308137 + L1Md_F3 LINE L1 593 632 -5987 4 1152 32519 56 3 1 chr4 74321983 74326671 -81303449 + L1Md_F3 LINE L1 794 5589 -297 4 1152 7681 60 8 0 chr4 74326672 74327647 -81302473 + L1Md_F3 LINE L1 5591 6573 -14 4 1152 526 77 0 0 chr4 74327914 74327992 -81302128 - L1Md_A LINE L1 0 6582 6505 4 1152 2962 30 0 0 chr4 74327992 74328354 -81301766 + L1Md_T LINE L1 5924 6285 -297 4 1152 656 137 81 44 chr4 74328361 74328497 -81301623 + RMER17B LTR ERVK 313 461 -497 4 1152 242 29 29 0 chr4 74328497 74328532 -81301588 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1152 656 137 81 44 chr4 74328532 74328555 -81301565 + RMER17B LTR ERVK 462 478 -480 4 1152 21 36 0 0 chr4 74328603 74328631 -81301489 + AT_rich Low_complexity Low_complexity 1 28 0 4 1152 183 355 72 32 chr4 74328742 74328867 -81301253 + MIRc SINE MIR 49 178 -90 4 1152 1335 253 83 31 chr4 74329075 74329462 -81300658 - MTD LTR MaLR -8 411 5 4 1152 382 215 13 19 chr4 74329467 74329572 -81300548 - MTD-int LTR MaLR -8 1250 1166 4 1152 21 36 0 0 chr4 74330017 74330045 -81300075 + AT_rich Low_complexity Low_complexity 1 28 0 4 1152 657 169 14 21 chr4 74330066 74330211 -81299909 - Lx2A1 LINE L1 -2 7006 6863 4 1152 860 315 5 45 chr4 74330503 74330899 -81299221 + Lx9 LINE L1 6729 7108 -536 4 1152 962 302 76 40 chr4 74331040 74331516 -81298604 + Lx9 LINE L1 6861 7353 -291 4 1152 1529 209 43 3 chr4 74332593 74332919 -81297201 - RMER20A LTR ERVK 0 516 178 4 1152 854 239 6 6 chr4 74333073 74333254 -81296866 - RMER20A LTR ERVK -325 191 11 4 1152 195 42 0 0 chr4 74333465 74333489 -81296631 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1152 1645 72 9 0 chr4 74335255 74335478 -81294642 + L1_Mus2 LINE L1 6342 6566 0 4 1152 525 270 36 24 chr4 74336099 74336266 -81293854 + RMER15 LTR ERVL 403 571 -4 4 1152 358 340 0 0 chr4 74336309 74336412 -81293708 - PB1D10 SINE Alu 0 117 15 4 1152 856 307 102 30 chr4 74336428 74336828 -81293292 + RLTR23 LTR ERV1 2 430 0 4 1152 317 319 70 4 chr4 74336881 74337111 -81293009 - HAL1 LINE L1 -2147 360 116 4 1152 23774 132 16 9 chr4 74337118 74341865 -81288255 - L1_Mus3 LINE L1 -1 6637 1866 4 1152 2549 113 50 0 chr4 74341865 74342244 -81287876 - MTA_Mm LTR MaLR 0 400 3 4 1152 7270 82 20 69 chr4 74342246 74343401 -81286719 - MTA_Mm-int LTR MaLR 0 1098 1 4 1152 2607 101 50 3 chr4 74343401 74343779 -81286341 - MTA_Mm LTR MaLR 0 396 1 4 1152 23774 143 18 8 chr4 74343779 74344177 -81285943 - L1_Mus3 LINE L1 -4018 1865 1453 4 1152 1125 209 73 11 chr4 74344173 74344434 -81285686 + L1VL2 LINE L1 166 442 -5893 4 1152 31333 77 18 17 chr4 74344486 74349562 -81280558 + L1Md_F2 LINE L1 510 5586 -297 4 1152 7611 66 6 10 chr4 74349563 74350560 -81279560 + L1Md_F2 LINE L1 5588 6580 -2 4 1152 286 202 258 43 chr4 74350751 74350844 -81279276 + RMER6C LTR ERVK 1 113 -577 4 1152 1261 219 31 226 chr4 74350847 74351457 -81278663 + RMER6C LTR ERVK 219 746 -10 4 1152 22 0 0 0 chr4 74351642 74351664 -81278456 + AT_rich Low_complexity Low_complexity 1 22 0 4 1152 1993 273 44 45 chr4 74351683 74352209 -81277911 + RLTR18 LTR ERVK 1 543 -73 4 1152 2366 201 35 112 chr4 74352209 74352871 -81277249 + RMER19C LTR ERVK 1 611 0 4 1152 1993 273 44 45 chr4 74352871 74352961 -81277159 + RLTR18 LTR ERVK 544 616 0 4 1152 417 39 0 0 chr4 74353150 74353201 -81276919 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1152 941 333 37 13 chr4 74353203 74353659 -81276461 + Lx9 LINE L1 6368 6834 -810 4 1152 427 271 21 57 chr4 74354084 74354210 -81275910 - MTD LTR MaLR -281 138 16 4 1152 207 0 0 0 chr4 74354210 74354233 -81275887 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1152 427 271 21 57 chr4 74354233 74354247 -81275873 - MTD LTR MaLR -404 15 4 4 1152 301 259 114 40 chr4 74354261 74354410 -81275710 + ORR1C2-int LTR MaLR 1233 1392 -117 4 1152 387 0 0 0 chr4 74354410 74354453 -81275667 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1152 414 0 0 0 chr4 74354453 74354498 -81275622 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1152 2890 134 27 9 chr4 74354612 74355050 -81275070 - RLTR41 LTR ERV1 0 446 1 4 1152 1465 219 141 17 chr4 74355275 74355707 -81274413 - MT2A LTR ERVL -2 599 3 4 1152 464 182 91 0 chr4 74355709 74355819 -81274301 - MERVL_2A-int LTR ERVL 0 5761 5642 4 1152 452 262 0 0 chr4 74355823 74355949 -81274171 - MERVL_2A-int LTR ERVL -391 5370 5245 4 1152 338 192 14 0 chr4 74355945 74356018 -81274102 - MERVL_2A-int LTR ERVL -3971 1790 1717 4 1152 1199 257 40 13 chr4 74356048 74356422 -81273698 + ORR1C2 LTR MaLR 1 384 0 4 1152 24397 80 9 2 chr4 74356445 74356976 -81273144 + L1_Mm LINE L1 1429 1961 -3922 4 1152 207 69 0 0 chr4 74356976 74357005 -81273115 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 1152 24397 80 9 2 chr4 74357005 74360063 -81270057 + L1_Mm LINE L1 1962 5043 -840 4 1152 511 276 168 60 chr4 74360069 74360354 -81269766 + RLTR10A LTR ERVK 96 411 0 4 1152 372 208 60 40 chr4 74360368 74360468 -81269652 + RLTR10-int LTR ERVK 316 417 -1570 4 1152 311 267 46 46 chr4 74360809 74360962 -81269158 + RLTR45-int LTR ERVK 2241 2393 -4149 4 1152 597 280 13 11 chr4 74361008 74361435 -81268685 + RLTR45-int LTR ERVK 3511 4102 -2719 4 1152 1631 255 46 54 chr4 74361471 74362481 -81267639 + RLTR45-int LTR ERVK 6529 7042 -202 4 1152 587 223 179 46 chr4 74362521 74362761 -81267359 + RLTR10A LTR ERVK 140 411 0 4 1152 4004 71 2 4 chr4 74362761 74363310 -81266810 + L1Md_F2 LINE L1 5039 5586 -297 4 1152 8399 34 2 0 chr4 74363311 74364302 -81265818 + L1Md_F2 LINE L1 5588 6580 -2 4 1152 5405 242 42 7 chr4 74364486 74365844 -81264276 - MERVL_2A-int LTR ERVL -4096 1665 260 4 1152 463 65 0 0 chr4 74365844 74365906 -81264214 + L1Md_F2 LINE L1 5525 5586 -297 4 1152 7467 63 21 3 chr4 74365907 74366873 -81263247 + L1Md_F2 LINE L1 5588 6570 -12 4 1152 288 120 0 0 chr4 74366881 74366931 -81263189 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1152 325 243 40 26 chr4 74366931 74367000 -81263120 - MT2A LTR ERVL -111 422 351 4 1152 229 306 0 0 chr4 74367037 74367099 -81263021 - MT2A LTR ERVL -380 153 92 4 1152 599 268 22 0 chr4 74367084 74367222 -81262898 - MT2A LTR ERVL -389 144 4 4 1152 271 305 101 19 chr4 74367244 74367451 -81262669 + L1_Rod LINE L1 5532 5818 -479 4 1152 1094 64 0 0 chr4 74367444 74367585 -81262535 + L1Md_F2 LINE L1 5446 5586 -297 4 1152 7255 84 8 12 chr4 74367586 74368580 -81261540 + L1Md_F2 LINE L1 5588 6577 -5 4 1152 318 247 125 13 chr4 74369157 74369309 -81260811 + L1_Mur3 LINE L1 3678 3846 -2297 4 1152 1208 153 0 9 chr4 74370654 74370871 -81259249 + Lx LINE L1 6434 6648 -6 4 1152 348 291 195 58 chr4 74371093 74371370 -81258750 - RMER5 LTR ERV1 -177 357 43 4 1152 1486 58 14 14 chr4 74371446 74371656 -81258464 + L1Md_F3 LINE L1 6373 6582 -2 4 1152 936 276 62 84 chr4 74371726 74372094 -81258026 - MTE2a LTR MaLR -17 362 3 4 1152 472 294 144 77 chr4 74372100 74372350 -81257770 - MTE2a-int LTR MaLR -4 1576 1298 4 1152 6768 37 0 10 chr4 74372350 74373169 -81256951 - L1Md_F2 LINE L1 -16 6566 5756 4 1152 472 294 144 77 chr4 74373169 74373231 -81256889 - MTE2a-int LTR MaLR -283 1297 1243 4 1152 2219 93 9 3 chr4 74373247 74373580 -81256540 - L1_Mus3 LINE L1 -556 6082 5748 4 1152 24 0 0 0 chr4 74373751 74373775 -81256345 + AT_rich Low_complexity Low_complexity 1 24 0 4 1152 310 338 93 0 chr4 74374308 74374459 -81255661 + RMER15 LTR ERVL 411 575 0 4 1152 251 226 0 0 chr4 74375007 74375069 -81255051 + Lx6 LINE L1 7389 7450 -10 4 1152 22 56 0 0 chr4 74376078 74376114 -81254006 + AT_rich Low_complexity Low_complexity 1 36 0 4 1152 26 50 0 0 chr4 74376438 74376478 -81253642 + AT_rich Low_complexity Low_complexity 1 40 0 4 1152 947 254 8 30 chr4 74376688 74376952 -81253168 - Lx2B LINE L1 -6 6994 6737 4 1152 16677 184 16 93 chr4 74376957 74379766 -81250354 - L1_Mur1 LINE L1 -314 5563 2776 4 1152 1891 113 9 91 chr4 74379766 74380106 -81250014 + ORR1A2 LTR MaLR 8 319 -8 4 1152 16677 184 16 93 chr4 74380106 74380833 -81249287 - L1_Mur1 LINE L1 -314 2775 2053 4 1152 378 0 0 0 chr4 74380833 74380875 -81249245 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1152 16677 184 16 93 chr4 74380875 74381547 -81248573 - L1_Mur1 LINE L1 -3825 2052 1366 4 1152 330 252 5 147 chr4 74381549 74381740 -81248380 - L1_Mur1 LINE L1 -6017 967 804 4 1152 3493 61 26 0 chr4 74382407 74382866 -81247254 + MT2C_Mm LTR ERVL 5 475 0 4 1152 405 0 0 0 chr4 74382871 74382916 -81247204 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1152 683 258 10 49 chr4 74383008 74383212 -81246908 - Lx9 LINE L1 -461 7183 6988 4 1152 2867 56 0 0 chr4 74383210 74383584 -81246536 + L1Md_F2 LINE L1 5213 5586 -297 4 1152 8333 38 1 2 chr4 74383584 74384580 -81245540 + L1Md_F2 LINE L1 5587 6581 -1 4 1152 1406 285 35 24 chr4 74384582 74385042 -81245078 - Lx9 LINE L1 -644 7000 6536 4 1152 315 346 52 0 chr4 74385051 74385187 -81244933 + Lx9 LINE L1 6380 6522 -1122 4 1152 243 125 0 0 chr4 74385214 74385254 -81244866 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1152 22 35 0 0 chr4 74386034 74386063 -81244057 + AT_rich Low_complexity Low_complexity 1 29 0 4 1152 1270 185 24 24 chr4 74387710 74388003 -81242117 + MERVL_2A-int LTR ERVL 5398 5690 -71 4 1152 454 206 92 0 chr4 74388001 74388132 -81241988 + MERVL_2A-int LTR ERVL 5619 5761 0 4 1152 717 229 40 138 chr4 74388177 74388576 -81241544 + MT2A LTR ERVL 1 527 -57 4 1152 394 66 66 0 chr4 74388586 74388662 -81241458 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 4 1152 5352 128 28 2 chr4 74388662 74389862 -81240258 - L1_Mus4 LINE L1 -378 6258 5017 4 1152 3348 202 20 11 chr4 74389845 74390546 -81239574 - L1VL4 LINE L1 -5340 962 256 4 1152 622 257 5 21 chr4 74390575 74390762 -81239358 - L1_Rod LINE L1 -6503 669 486 4 1152 887 183 0 6 chr4 74390828 74391009 -81239111 + CT-rich Low_complexity Low_complexity 1 180 0 4 1152 492 324 0 6 chr4 74391562 74391733 -81238387 + Lx8 LINE L1 6772 6941 -532 4 1152 327 267 177 29 chr4 74391796 74392050 -81238070 + Lx8 LINE L1 7178 7468 -5 4 1152 243 0 0 0 chr4 74392270 74392297 -81237823 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1152 987 79 7 7 chr4 74392297 74392427 -81237693 - B1_Mus1 SINE Alu -11 137 7 4 1152 367 408 0 0 chr4 74393249 74393396 -81236724 + RSINE1 SINE B4 2 148 -17 4 1152 444 37 0 0 chr4 74394247 74394301 -81235819 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1152 21 0 0 0 chr4 74396563 74396584 -81233536 + AT_rich Low_complexity Low_complexity 1 21 0 4 1152 863 80 0 8 chr4 74396900 74397026 -81233094 + (GAA)n Simple_repeat Simple_repeat 3 127 0 4 1152 251 222 50 25 chr4 74397223 74397343 -81232777 - Lx9 LINE L1 -106 7538 7416 4 1152 441 95 0 0 chr4 74397389 74397452 -81232668 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1152 5461 237 33 50 chr4 74397486 74399035 -81231085 - Lx7 LINE L1 0 7696 6175 4 1152 33156 77 10 9 chr4 74399041 74403284 -81226836 - L1Md_F2 LINE L1 -12 6570 2361 4 1152 2863 76 0 0 chr4 74403284 74403641 -81226479 - IAPEY2_LTR LTR ERVK 0 357 1 4 1152 33156 143 33 11 chr4 74403641 74405754 -81224366 - L1Md_F2 LINE L1 -3523 2360 174 4 1152 242 211 44 11 chr4 74406186 74406262 -81223858 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 4 1152 514 0 15 15 chr4 74406262 74406329 -81223791 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1152 242 211 44 11 chr4 74406329 74406343 -81223777 + (TAGA)n Simple_repeat Simple_repeat 2 14 0 5 1152 4072 91 36 15 chr4 74406652 74407256 -81222864 - Lx3A LINE L1 -146 5740 5124 5 1152 6014 113 34 17 chr4 74407250 74408197 -81221923 + Lx3A LINE L1 5715 6677 -304 5 1152 397 348 15 0 chr4 74408264 74408399 -81221721 + MLT1A0 LTR MaLR 227 363 -2 5 1152 21 36 0 0 chr4 74408989 74409017 -81221103 + AT_rich Low_complexity Low_complexity 1 28 0 5 1152 238 291 70 96 chr4 74410462 74410618 -81219502 - MIRb SINE MIR -13 255 104 5 1152 26 50 0 0 chr4 74413508 74413548 -81216572 + AT_rich Low_complexity Low_complexity 1 40 0 5 1152 183 42 0 0 chr4 74413548 74413572 -81216548 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1152 528 106 0 0 chr4 74413572 74413666 -81216454 + (GA)n Simple_repeat Simple_repeat 2 95 0 5 1152 301 244 95 95 chr4 74413666 74413761 -81216359 - B3 SINE B2 -54 162 68 5 1152 528 370 47 0 chr4 74413726 74413918 -81216202 + MER63A DNA AcHobo 10 210 0 5 1152 194 303 285 8 chr4 74415286 74415409 -81214711 + MER5B DNA MER1_type 16 172 -6 5 1152 203 350 126 13 chr4 74415590 74415749 -81214371 + MIRb SINE MIR 91 267 -1 5 1152 207 0 0 0 chr4 74416251 74416274 -81213846 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1152 25 51 0 0 chr4 74416973 74417012 -81213108 + AT_rich Low_complexity Low_complexity 1 39 0 5 1152 773 268 5 38 chr4 74417356 74417569 -81212551 + B3 SINE B2 4 209 -7 5 1152 224 213 21 0 chr4 74417657 74417704 -81212416 + RSINE1 SINE B4 3 50 -115 5 1152 224 281 8 50 chr4 74418438 74418558 -81211562 + GA-rich Low_complexity Low_complexity 2 116 0 5 1152 360 0 0 0 chr4 74418966 74419006 -81211114 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 5 1152 361 60 0 0 chr4 74419328 74419378 -81210742 + L1Md_F3 LINE L1 6511 6560 -24 5 1152 390 21 0 0 chr4 74419378 74419425 -81210695 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1152 213 330 64 36 chr4 74421741 74421851 -81208269 - MIR3 SINE MIR -13 195 83 5 1152 363 371 21 8 chr4 74421981 74422233 -81207887 - Lx9 LINE L1 -184 7460 7131 5 1152 742 350 82 26 chr4 74422883 74423139 -81206981 - ORR1D2 LTR MaLR 0 370 94 5 1152 1071 67 7 0 chr4 74423139 74423289 -81206831 + L1Md_F3 LINE L1 6432 6582 -2 5 1152 742 350 82 26 chr4 74423289 74423372 -81206748 - ORR1D2 LTR MaLR -277 93 12 5 1152 960 228 23 5 chr4 74423431 74423651 -81206469 + URR1B DNA MER1_type 1 224 -1 5 1152 387 91 12 38 chr4 74423734 74423814 -81206306 + (CAAA)n Simple_repeat Simple_repeat 2 79 0 5 1152 234 363 102 28 chr4 74423918 74424173 -81205947 + Charlie2a DNA MER1_type 201 474 -2387 5 1152 339 277 115 16 chr4 74424208 74424399 -81205721 + Charlie2a DNA MER1_type 769 978 -1883 5 1152 4054 82 0 7 chr4 74424526 74425093 -81205027 - L1_Mm LINE L1 -2138 3745 3183 5 1152 7221 76 9 3 chr4 74425093 74426053 -81204067 + L1Md_F2 LINE L1 5601 6566 -16 5 1152 755 310 67 45 chr4 74426651 74426698 -81203422 + MTEa LTR MaLR 19 74 -305 5 1152 234 81 0 0 chr4 74426698 74426735 -81203385 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1152 222 37 0 0 chr4 74426736 74426763 -81203357 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1152 755 310 67 45 chr4 74426763 74426980 -81203140 + MTEa LTR MaLR 75 291 -88 5 1152 351 65 0 0 chr4 74427012 74427058 -81203062 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1152 2027 239 46 76 chr4 74427389 74427728 -81202392 - Lx7 LINE L1 -5 7691 7364 5 1152 221 0 35 0 chr4 74427728 74427757 -81202363 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1152 2027 239 46 76 chr4 74427757 74427930 -81202190 - Lx7 LINE L1 -333 7363 7212 5 1152 297 0 0 0 chr4 74427930 74427963 -81202157 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1152 2027 239 46 76 chr4 74427963 74428119 -81202001 - Lx7 LINE L1 -485 7211 7042 5 1152 1573 217 33 0 chr4 74428124 74428460 -81201660 - Lx7 LINE L1 -775 6921 6575 5 1152 2259 168 16 0 chr4 74428508 74428894 -81201226 - ORR1B1 LTR MaLR -2 392 1 5 1152 34 42 0 0 chr4 74429074 74429122 -81200998 + AT_rich Low_complexity Low_complexity 1 48 0 5 1152 5013 109 22 1 chr4 74429537 74430311 -81199809 + L1_Mm LINE L1 3262 4051 -1832 5 1152 460 33 6 6 chr4 74431167 74431230 -81198890 - MTB_Mm LTR MaLR 0 407 284 5 1152 375 239 270 63 chr4 74431230 74431404 -81198716 - RMER1C Other Other -1125 217 8 5 1152 189 0 0 0 chr4 74432125 74432146 -81197974 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 1152 387 0 0 0 chr4 74432146 74432188 -81197932 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1152 573 14 97 0 chr4 74433033 74433105 -81197015 - L1Md_F LINE L1 -6330 189 111 5 1152 6092 60 0 4 chr4 74433106 74433879 -81196241 + L1Md_F2 LINE L1 5800 6569 -13 5 1152 240 301 12 0 chr4 74434478 74434561 -81195559 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1152 489 302 114 65 chr4 74434579 74434841 -81195279 - B4A SINE B4 -16 276 2 5 1152 242 193 108 54 chr4 74435584 74435677 -81194443 - Lx8 LINE L1 -1 7472 7375 5 1152 3060 160 68 19 chr4 74435688 74436281 -81193839 + RLTR26 LTR ERVK 1 622 -20 5 1152 3881 89 94 23 chr4 74436281 74436939 -81193181 + RMER17D LTR ERVK 1 705 -184 5 1152 3837 150 19 33 chr4 74436954 74437643 -81192477 + L1_Mm LINE L1 5091 5769 -114 5 1152 282 87 0 0 chr4 74437747 74437793 -81192327 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1152 1555 275 76 23 chr4 74437862 74438387 -81191733 - Lx8 LINE L1 -542 6931 6379 5 1152 1850 109 28 22 chr4 74439252 74439572 -81190548 - RLTRETN_Mm LTR ERVK 0 322 1 5 1152 1266 221 23 40 chr4 74440153 74440455 -81189665 - MTC LTR MaLR -2 419 123 5 1152 425 180 153 0 chr4 74440478 74440560 -81189560 + URR1B DNA MER1_type 78 169 -56 5 1152 3884 166 47 14 chr4 74440560 74441300 -81188820 - Lx2B LINE L1 -6 6994 6230 5 1152 425 180 153 0 chr4 74441300 74441328 -81188792 + URR1B DNA MER1_type 170 204 -21 5 1152 235 286 16 16 chr4 74441344 74441408 -81188712 - Lx9 LINE L1 -1022 6622 6559 5 1152 325 349 23 75 chr4 74441741 74441955 -81188165 - RMER4A LTR ERVK -249 217 15 5 1152 426 96 0 0 chr4 74442251 74442324 -81187796 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1152 441 0 0 0 chr4 74442476 74442525 -81187595 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1152 204 111 0 0 chr4 74443949 74443985 -81186135 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1152 612 0 0 0 chr4 74444003 74444071 -81186049 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1152 445 390 49 37 chr4 74444411 74444738 -81185382 + LTR16E1 LTR ERVL 197 527 -11 5 1152 21 0 0 0 chr4 74445252 74445273 -81184847 + AT_rich Low_complexity Low_complexity 1 21 0 5 1152 741 43 0 0 chr4 74445834 74445927 -81184193 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 1152 204 97 0 0 chr4 74446492 74446523 -81183597 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 5 1152 212 302 0 19 chr4 74446547 74446601 -81183519 - PB1D7 SINE Alu -67 53 1 5 1152 2098 244 9 43 chr4 74447105 74447640 -81182480 + Lx9 LINE L1 6578 7094 -550 5 17 39403 26 1 6 chr4 74447660 74453640 -81176480 - L1Md_A LINE L1 0 6582 643 5 1153 887 236 190 6 chr4 74453641 74453847 -81176273 + Lx9 LINE L1 7081 7320 -324 5 1153 378 0 0 0 chr4 74453847 74453889 -81176231 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1153 887 225 112 7 chr4 74453889 74454135 -81175985 + Lx9 LINE L1 7321 7643 -1 5 1153 260 295 13 13 chr4 74454452 74454531 -81175589 - MLT1I LTR MaLR -2 409 331 5 1153 441 0 0 0 chr4 74454894 74454943 -81175177 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1153 1529 251 24 30 chr4 74455245 74455615 -81174505 + ORR1D1 LTR MaLR 7 374 0 5 1153 1541 201 73 59 chr4 74455778 74456132 -81173988 - ORR1B2 LTR MaLR -8 359 1 5 1153 6276 199 65 17 chr4 74456132 74457560 -81172560 - ORR1B2-int LTR MaLR 0 1509 13 5 1153 1144 230 62 75 chr4 74457566 74457872 -81172248 - ORR1B2 LTR MaLR -8 359 58 5 1153 9865 82 20 25 chr4 74457887 74459860 -81170260 - Lx3_Mus LINE L1 0 7009 5058 5 1153 321 236 0 89 chr4 74459860 74459939 -81170181 - ORR1B2 LTR MaLR -291 76 5 5 1153 23 33 0 0 chr4 74460370 74460400 -81169720 + AT_rich Low_complexity Low_complexity 1 30 0 5 1153 523 130 0 20 chr4 74460704 74460806 -81169314 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1153 345 100 0 0 chr4 74460834 74460884 -81169236 + (CTA)n Simple_repeat Simple_repeat 1 50 0 5 1153 183 42 0 0 chr4 74461314 74461338 -81168782 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1153 465 66 0 0 chr4 74461519 74461580 -81168540 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1153 32594 90 20 2 chr4 74461725 74467801 -81162319 - L1Md_F2 LINE L1 -12 6570 381 5 1153 260 287 106 0 chr4 74468120 74468214 -81161906 - Lx7 LINE L1 -4 7692 7589 5 1153 333 0 0 0 chr4 74468887 74468924 -81161196 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1153 3873 226 59 58 chr4 74469161 74469819 -81160301 - Lx7 LINE L1 -246 7450 6774 5 1153 1682 103 16 12 chr4 74469819 74470074 -81160046 + L1Md_F2 LINE L1 6326 6581 -1 5 1153 3873 226 59 58 chr4 74470074 74470116 -81160004 - Lx7 LINE L1 -923 6773 6753 5 1153 1025 109 0 7 chr4 74470116 74470263 -81159857 - B1_Mm SINE Alu -1 146 1 5 1153 3873 226 59 58 chr4 74470263 74470578 -81159542 - Lx7 LINE L1 -944 6752 6433 5 1153 5807 186 37 12 chr4 74470584 74471730 -81158390 - Lx2B LINE L1 0 7000 5827 5 1153 9292 157 67 5 chr4 74471762 74473674 -81156446 - L1_Mus4 LINE L1 -2 6634 4478 5 1153 219 36 0 0 chr4 74473674 74473702 -81156418 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1153 4438 49 0 4 chr4 74473706 74474262 -81155858 - L1Md_F3 LINE L1 -15 6569 6016 5 1153 9292 197 125 11 chr4 74474262 74474368 -81155752 - L1_Mus4 LINE L1 -1400 4477 4349 5 1153 980 77 90 0 chr4 74474368 74474524 -81155596 - L1_Mus2 LINE L1 0 6566 6397 5 1153 9292 197 125 11 chr4 74474524 74475711 -81154409 - L1_Mus4 LINE L1 -1529 4348 3135 5 1153 336 260 71 0 chr4 74475706 74475860 -81154260 - L1_Mur3 LINE L1 -552 5328 5164 5 1153 213 65 0 0 chr4 74475860 74475891 -81154229 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1153 27 0 0 0 chr4 74476673 74476700 -81153420 + AT_rich Low_complexity Low_complexity 1 27 0 5 1153 26 0 0 0 chr4 74476756 74476782 -81153338 + AT_rich Low_complexity Low_complexity 1 26 0 5 1153 7489 77 4 3 chr4 74476782 74478474 -81151646 - L1Md_F2 LINE L1 -6 6576 4884 5 1153 2186 298 86 15 chr4 74478477 74479257 -81150863 + Lx8 LINE L1 6497 7325 -148 5 1153 693 93 0 0 chr4 74479257 74479364 -81150756 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1153 2186 298 86 15 chr4 74479364 74479445 -81150675 + Lx8 LINE L1 7326 7418 -55 5 1153 1021 293 67 27 chr4 74479477 74479849 -81150271 + MTD LTR MaLR 33 419 0 5 1153 873 241 14 18 chr4 74480652 74480872 -81149248 + Lx5 LINE L1 6168 6386 -664 5 1153 3971 169 46 34 chr4 74480854 74480895 -81149225 + Lx4B LINE L1 5058 5097 -780 5 1153 1525 45 5 24 chr4 74480895 74481100 -81149020 + L1_Mus1 LINE L1 6366 6566 -1 6 1153 3971 174 40 26 chr4 74481100 74482087 -81148033 + Lx4B LINE L1 5098 6105 -953 5 1153 13751 29 1 0 chr4 74482105 74484423 -81145697 - L1Md_T LINE L1 0 6582 4262 6 1153 2417 235 13 64 chr4 74484422 74485049 -81145071 + Lx5 LINE L1 6439 7033 -17 5 1153 468 0 0 0 chr4 74485517 74485569 -81144551 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1153 1381 246 103 48 chr4 74485574 74486009 -81144111 - Lx9 LINE L1 -227 7417 6959 6 1153 450 0 0 0 chr4 74487350 74487400 -81142720 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1153 237 119 0 0 chr4 74487923 74487965 -81142155 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1153 294 296 143 0 chr4 74487991 74488089 -81142031 - B3 SINE B2 -92 124 13 6 1153 30 45 0 0 chr4 74488510 74488554 -81141566 + AT_rich Low_complexity Low_complexity 1 44 0 6 1153 2526 289 75 9 chr4 74488564 74489541 -81140579 - Lx7 LINE L1 -1107 6589 5532 6 1153 1420 257 37 5 chr4 74489569 74489949 -81140171 + Lx7 LINE L1 6638 7029 -667 6 1153 405 259 46 0 chr4 74490063 74490171 -81139949 - Lx9 LINE L1 -255 7389 7277 6 1153 1612 244 22 11 chr4 74490214 74490583 -81139537 - Lx9 LINE L1 -356 7288 6916 6 1153 180 0 0 0 chr4 74491411 74491431 -81138689 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1153 967 86 7 41 chr4 74491431 74491577 -81138543 - B1_Mus1 SINE Alu -2 146 6 6 1153 470 241 43 110 chr4 74491434 74491597 -81138523 - B4 SINE B4 -71 221 70 6 1153 2766 91 35 19 chr4 74492140 74492566 -81137554 + L1_Mus4 LINE L1 6201 6633 -3 6 1153 180 0 0 0 chr4 74492776 74492796 -81137324 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1153 257 349 35 144 chr4 74492809 74493010 -81137110 + B4A SINE B4 42 220 -72 6 1153 413 36 0 18 chr4 74493100 74493156 -81136964 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1153 333 0 0 0 chr4 74493156 74493192 -81136928 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1153 1412 292 47 12 chr4 74493221 74493768 -81136352 + Lx7 LINE L1 5317 5914 -1782 6 1153 243 0 0 0 chr4 74493844 74493871 -81136249 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1153 323 67 22 0 chr4 74494269 74494314 -81135806 - HAL1-3A_ME LINE L1 -823 2035 1990 6 1153 211 196 0 35 chr4 74494416 74494436 -81135684 + A-rich Low_complexity Low_complexity 4 23 0 6 1153 692 230 13 0 chr4 74494436 74494588 -81135532 - Lx6 LINE L1 -12 7448 7295 6 1153 211 196 0 35 chr4 74494588 74494625 -81135495 + A-rich Low_complexity Low_complexity 24 59 0 6 1153 413 92 13 0 chr4 74496007 74496083 -81134037 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 6 1153 29 0 0 0 chr4 74496699 74496728 -81133392 + AT_rich Low_complexity Low_complexity 1 29 0 6 1153 272 293 17 0 chr4 74496807 74496923 -81133197 - L1MA4 LINE L1 -393 5907 5790 6 1153 835 331 31 24 chr4 74496923 74497090 -81133030 + Lx7 LINE L1 6100 6259 -1437 6 1153 6412 105 25 16 chr4 74497090 74498072 -81132048 - Lx3_Mus LINE L1 -2 7007 6017 6 1153 835 331 31 24 chr4 74498072 74498325 -81131795 + Lx7 LINE L1 6260 6523 -1173 6 1153 990 114 0 0 chr4 74498499 74498639 -81131481 + B1_Mus1 SINE Alu 3 142 -6 6 1153 410 61 12 47 chr4 74498640 74498726 -81131394 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 6 1153 845 117 7 0 chr4 74498805 74498942 -81131178 + (TCC)n Simple_repeat Simple_repeat 1 138 0 6 1153 458 284 105 28 chr4 74499020 74499322 -81130798 - L1_Rod LINE L1 -706 5597 5232 6 1153 1881 142 0 18 chr4 74499322 74499653 -81130467 - Lx LINE L1 -10 6644 6320 6 1153 350 296 65 85 chr4 74499653 74499769 -81130351 - L1_Rod LINE L1 -616 5231 5124 6 1153 709 326 95 20 chr4 74500000 74500170 -81129950 + ORR1D2 LTR MaLR 55 245 -125 1 1153 1518 37 26 5 chr4 74500170 74500359 -81129761 - B2_Mm1a SINE B2 0 193 1 2 1153 709 326 95 20 chr4 74500359 74500482 -81129638 + ORR1D2 LTR MaLR 246 370 0 1 1153 528 312 64 48 chr4 74500487 74500844 -81129276 - L1_Mur3 LINE L1 -903 4977 4615 3 1153 287 277 177 0 chr4 74500943 74501084 -81129036 - L1_Mur3 LINE L1 -1538 4342 4177 3 1153 350 159 0 14 chr4 74501105 74501117 -81129003 + T-rich Low_complexity Low_complexity 61 72 0 4 1153 1138 101 6 11 chr4 74501117 74501298 -81128822 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 5 1153 350 159 0 14 chr4 74501298 74501355 -81128765 + T-rich Low_complexity Low_complexity 4 60 0 6 1153 729 240 33 23 chr4 74501357 74501605 -81128515 + ORR1B1 LTR MaLR 1 226 -168 7 1153 900 246 66 5 chr4 74501597 74501809 -81128311 + ORR1B1 LTR MaLR 146 370 -24 8 1153 11473 68 3 1 chr4 74501809 74503354 -81126766 - L1_Mm LINE L1 -1870 4013 2467 9 1153 739 322 36 52 chr4 74503379 74504038 -81126082 - L1_Mur3 LINE L1 -1759 4121 3473 3 1153 555 16 0 0 chr4 74504785 74504849 -81125271 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 1 1153 318 79 0 45 chr4 74504979 74505045 -81125075 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1153 377 349 35 35 chr4 74505081 74505283 -81124837 + LTR16C LTR ERVL 288 489 0 1 1153 283 339 174 12 chr4 74505450 74505617 -81124503 - MER58C DNA MER1_type -2 213 20 1 1153 389 294 60 48 chr4 74506300 74506468 -81123652 + B4A SINE B4 54 223 -69 1 1153 218 102 32 48 chr4 74506468 74506530 -81123590 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 1 1153 570 15 0 0 chr4 74506592 74506659 -81123461 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1153 810 113 0 0 chr4 74506659 74506809 -81123311 + (GA)n Simple_repeat Simple_repeat 2 152 0 1 1153 612 246 91 0 chr4 74507359 74507611 -81122509 - Lx9 LINE L1 -2 7642 7368 1 1153 1130 255 122 13 chr4 74507756 74508134 -81121986 + MTD LTR MaLR 1 419 0 1 1153 2598 122 2 8 chr4 74508388 74508786 -81121334 + Lx LINE L1 6253 6648 -6 2 1153 5831 37 3 7 chr4 74509360 74510069 -81120051 + L1Md_F2 LINE L1 5869 6574 -8 2 1153 244 301 12 12 chr4 74510073 74510157 -81119963 - RLTR18B LTR ERVK -424 88 5 2 1153 35399 45 0 3 chr4 74510448 74515672 -81114448 + L1Md_T LINE L1 285 5589 -297 2 1153 8491 31 0 0 chr4 74515672 74516668 -81113452 + L1Md_T LINE L1 5590 6585 0 2 1153 327 384 35 9 chr4 74516997 74517223 -81112897 + Lx9 LINE L1 517 748 -6860 2 1153 520 290 37 37 chr4 74517294 74517509 -81112611 + Lx9 LINE L1 743 957 -6651 2 1153 504 272 125 96 chr4 74517570 74517883 -81112237 + Lx9 LINE L1 6092 6413 -1231 2 1153 10939 75 3 1 chr4 74517882 74519335 -81110785 + L1Md_F2 LINE L1 4131 5586 -297 2 1153 7586 72 3 3 chr4 74519335 74520331 -81109789 + L1Md_F2 LINE L1 5587 6582 0 2 1153 3187 268 91 6 chr4 74520331 74521309 -81108811 + Lx9 LINE L1 6400 7462 -182 2 1153 576 65 0 0 chr4 74521310 74521387 -81108733 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1153 324 280 67 8 chr4 74521579 74521698 -81108422 + B3 SINE B2 91 216 0 2 1153 247 278 49 57 chr4 74521956 74522078 -81108042 + Lx9 LINE L1 7338 7458 -186 2 1153 3165 245 28 12 chr4 74522410 74522786 -81107334 - Lx2B LINE L1 -10 6990 6608 2 1153 5996 53 4 3 chr4 74522786 74523538 -81106582 - L1Md_F2 LINE L1 0 6582 5830 3 1153 3165 245 28 12 chr4 74523538 74523959 -81106161 - Lx2B LINE L1 -393 6607 6183 2 1153 369 0 0 0 chr4 74524701 74524742 -81105378 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1153 1185 195 119 24 chr4 74524904 74525198 -81104922 - RMER6C LTR ERVK -2 688 367 3 1153 999 219 93 0 chr4 74525189 74525404 -81104716 - RMER6C LTR ERVK -485 235 1 3 1153 268 189 0 0 chr4 74525522 74525575 -81104545 - MTC LTR MaLR -333 88 36 3 1153 372 59 0 0 chr4 74525606 74525657 -81104463 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 3 1153 5390 98 9 3 chr4 74525990 74526787 -81103333 + L1_Mus4 LINE L1 5537 6349 -287 3 1153 864 332 56 11 chr4 74526810 74527166 -81102954 + RCHARR1 DNA MER1_type 48 419 -555 3 1153 991 261 66 0 chr4 74527301 74527588 -81102532 + RCHARR1 DNA MER1_type 428 733 -241 3 1153 185 0 40 0 chr4 74527589 74527614 -81102506 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1153 7556 170 34 68 chr4 74527617 74530473 -81099647 - L1Md_F2 LINE L1 0 6582 3843 3 1153 4063 265 53 22 chr4 74530542 74531652 -81098468 + Lx5 LINE L1 5861 7005 -45 3 1153 235 194 99 30 chr4 74531652 74531753 -81098367 + RCHARR1 DNA MER1_type 744 851 -123 3 1153 411 227 69 23 chr4 74531849 74531980 -81098140 + RCHARR1 DNA MER1_type 837 973 -1 3 1153 407 155 12 0 chr4 74532743 74532827 -81097293 + T-rich Low_complexity Low_complexity 1 85 0 4 1153 6698 184 21 53 chr4 74532827 74534011 -81096109 - Lx2B LINE L1 -1 6999 5858 4 1153 414 0 0 0 chr4 74534011 74534057 -81096063 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1153 504 0 0 0 chr4 74534057 74534112 -81096008 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1153 6698 184 21 53 chr4 74534112 74534307 -81095813 - Lx2B LINE L1 -1143 5857 5664 4 1153 180 111 0 0 chr4 74534337 74534364 -81095756 + (TTA)n Simple_repeat Simple_repeat 3 29 0 4 1153 302 357 76 38 chr4 74534370 74534501 -81095619 - B1F1 SINE Alu -9 140 5 4 1153 232 328 30 0 chr4 74534951 74535018 -81095102 - MER58A DNA MER1_type -130 94 26 4 1153 223 304 0 92 chr4 74535101 74535177 -81094943 - MIR SINE MIR -64 144 76 4 1153 3525 45 2 15 chr4 74536350 74536804 -81093316 + L1Md_F2 LINE L1 6135 6582 0 4 1153 252 122 0 0 chr4 74538103 74538144 -81091976 + (GAAA)n Simple_repeat Simple_repeat 1 41 0 4 1153 254 250 65 11 chr4 74538539 74538632 -81091488 + MER94 DNA AcHobo 36 133 -1 5 1153 318 50 0 0 chr4 74538948 74538988 -81091132 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1153 316 82 33 0 chr4 74539386 74539447 -81090673 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 1153 1172 68 0 0 chr4 74539449 74539596 -81090524 - B1_Mm SINE Alu 0 147 1 5 1153 1097 66 0 0 chr4 74540705 74540841 -81089279 + B1_Mus2 SINE Alu 1 136 -11 5 1153 333 0 0 0 chr4 74540841 74540878 -81089242 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1153 195 220 0 0 chr4 74541008 74541058 -81089062 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1153 200 94 31 0 chr4 74541062 74541094 -81089026 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1153 2140 107 0 16 chr4 74541437 74541760 -81088360 + L1Md_F2 LINE L1 6265 6582 0 5 1153 2155 219 84 0 chr4 74541783 74542245 -81087875 + L1_Mur2 LINE L1 159 659 -6053 5 1153 233 219 125 0 chr4 74542271 74542335 -81087785 + L1VL2 LINE L1 421 492 -5843 6 1153 422 171 0 22 chr4 74542631 74542721 -81087399 - Lx2 LINE L1 0 6997 6910 6 1153 423 0 0 0 chr4 74542726 74542773 -81087347 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1153 180 0 0 0 chr4 74542778 74542798 -81087322 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1153 836 156 117 8 chr4 74542799 74543039 -81087081 + MYSERV16_I-int LTR ERVK 2061 2326 0 6 1153 1361 209 135 32 chr4 74543039 74543572 -81086548 + BGLII_B LTR ERVK 1 464 -89 6 1153 420 20 0 0 chr4 74543646 74543695 -81086425 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 6 1153 345 159 0 0 chr4 74543754 74543817 -81086303 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 6 1153 405 39 0 0 chr4 74546124 74546175 -81083945 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1153 915 86 20 0 chr4 74546214 74546366 -81083754 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 6 1153 655 306 0 37 chr4 74546426 74546643 -81083477 - Lx6 LINE L1 -53 7407 7199 6 1153 180 209 70 0 chr4 74547442 74547485 -81082635 - MIRm SINE MIR -3 273 228 7 1153 217 373 107 35 chr4 74547448 74547737 -81082383 - L2c LINE L2 -11 3376 3067 7 1153 2113 141 25 0 chr4 74549127 74549481 -81080639 + Lx3B LINE L1 6608 6970 -3 7 1153 354 45 0 0 chr4 74549485 74549529 -81080591 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 7 1153 241 277 108 0 chr4 74550812 74550895 -81079225 - MTEa LTR MaLR -82 297 206 7 1153 588 14 0 0 chr4 74551020 74551089 -81079031 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 7 1153 769 277 14 10 chr4 74551104 74551312 -81078808 - B3 SINE B2 -6 210 2 7 1153 270 0 0 0 chr4 74551348 74551378 -81078742 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1153 2027 78 0 0 chr4 74551522 74551790 -81078330 - L1_Mus1 LINE L1 0 6567 6300 7 1153 185 286 147 22 chr4 74553559 74553695 -81076425 + MIRc SINE MIR 96 248 -20 7 1153 185 320 48 29 chr4 74553766 74553869 -81076251 - L2c LINE L2 -67 3320 3216 8 1153 710 362 20 45 chr4 74553968 74554260 -81075860 + B4A SINE B4 8 292 0 8 1153 234 0 0 0 chr4 74554281 74554307 -81075813 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1153 3147 163 79 59 chr4 74554821 74555634 -81074486 - RMER17A2 LTR ERVK 0 906 78 8 1153 7250 59 0 0 chr4 74555645 74556543 -81073577 - L1Md_F2 LINE L1 -19 6563 5666 8 1153 518 80 0 13 chr4 74556543 74556619 -81073501 - RMER17A2 LTR ERVK -831 75 1 8 1153 323 311 41 0 chr4 74557988 74558110 -81072010 + MIRb SINE MIR 75 201 -67 8 1153 181 191 20 41 chr4 74558151 74558200 -81071920 - MIR SINE MIR -32 230 183 8 1153 1172 257 100 3 chr4 74558257 74558577 -81071543 - ORR1E LTR MaLR 0 359 9 8 1153 921 86 11 0 chr4 74558683 74558828 -81071292 - B1_Mus1 SINE Alu 0 150 2 8 1153 321 330 32 56 chr4 74558844 74558969 -81071151 + MER5A DNA MER1_type 61 182 -7 8 1153 309 304 52 33 chr4 74559006 74559159 -81070961 + MER58A DNA MER1_type 44 199 -25 9 1153 395 193 36 12 chr4 74559770 74559854 -81070266 + RLTR20B2 LTR ERVK 6 91 -469 9 1153 1809 78 4 11 chr4 74559854 74560127 -81069993 - Lx3_Mus LINE L1 -543 5343 5073 9 1153 7567 79 10 12 chr4 74560127 74561451 -81068669 + Lx3_Mus LINE L1 5349 6669 -340 9 1153 7691 34 24 0 chr4 74561451 74562371 -81067749 + L1Md_T LINE L1 5638 6579 -3 9 1153 423 292 136 34 chr4 74562573 74562750 -81067370 + MLT1B LTR MaLR 192 386 -4 9 1153 337 294 18 9 chr4 74562931 74563041 -81067079 - MER58A DNA MER1_type -68 156 46 9 1153 402 306 67 40 chr4 74563076 74563226 -81066894 - MER5A DNA MER1_type -1 188 35 9 1153 515 302 14 7 chr4 74563325 74563465 -81066655 + ORR1E LTR MaLR 1 141 -218 9 1153 1067 311 85 0 chr4 74564636 74564990 -81065130 - ORR1C2 LTR MaLR 0 384 1 9 1153 543 305 55 8 chr4 74565306 74565544 -81064576 - Lx9 LINE L1 -188 7456 7208 9 1153 277 195 241 0 chr4 74565544 74565631 -81064489 - L1_Rod LINE L1 -156 5691 5584 1 1153 814 270 61 45 chr4 74565638 74565948 -81064172 + RLTR18 LTR ERVK 1 315 -301 1 1153 749 273 68 32 chr4 74566024 74566037 -81064083 + RLTR18B LTR ERVK 229 242 -270 1 1153 1226 90 6 0 chr4 74566037 74566215 -81063905 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1153 749 273 68 32 chr4 74566215 74566451 -81063669 + RLTR18B LTR ERVK 243 486 -26 1 1153 1543 251 107 47 chr4 74566471 74566677 -81063443 - L1_Rod LINE L1 -266 5581 5365 1 1153 308 43 22 0 chr4 74566677 74566723 -81063397 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1153 1543 251 107 47 chr4 74566723 74567340 -81062780 - L1_Rod LINE L1 -483 5364 4709 1 1153 201 259 0 0 chr4 74567369 74567427 -81062693 + A-rich Low_complexity Low_complexity 1 58 0 1 1153 189 0 0 0 chr4 74568232 74568253 -81061867 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1153 586 281 82 4 chr4 74568408 74568645 -81061475 + L1_Rod LINE L1 3738 3994 -1853 1 1153 406 105 26 0 chr4 74568779 74568855 -81061265 - L1Md_F2 LINE L1 0 6582 6505 1 1153 2798 61 0 0 chr4 74568855 74569232 -81060888 + L1_Mus1 LINE L1 5635 6011 -556 1 1153 936 291 17 91 chr4 74569233 74569951 -81060169 + L1_Rod LINE L1 3997 4661 -1186 1 1153 249 108 0 0 chr4 74569951 74569988 -81060132 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1153 360 0 0 0 chr4 74569988 74570027 -81060093 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1153 931 256 146 15 chr4 74570114 74570443 -81059677 + ORR1D1 LTR MaLR 1 372 -2 1 1153 1041 308 63 7 chr4 74570469 74570911 -81059209 + Lx9 LINE L1 6469 6935 -709 1 1153 225 219 185 28 chr4 74571051 74571159 -81058961 + Lx9 LINE L1 7348 7472 -172 1 1153 22 56 0 0 chr4 74571242 74571278 -81058842 + AT_rich Low_complexity Low_complexity 1 36 0 1 1153 7601 150 26 6 chr4 74571545 74572726 -81057394 + L1_Mus1 LINE L1 2286 3476 -2407 1 1153 198 0 0 0 chr4 74572726 74572748 -81057372 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1153 7601 150 26 6 chr4 74572748 74573061 -81057059 + L1_Mus1 LINE L1 3477 3809 -2074 1 1153 2888 22 5 94 chr4 74573062 74573465 -81056655 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1153 27728 16 1 2 chr4 74573465 74576740 -81053380 - IAPEz-int LTR ERVK 0 6481 3210 1 1153 7641 80 73 18 chr4 74576739 74577973 -81052147 - IAPEz-int LTR ERVK -5168 1313 67 1 1153 953 86 159 0 chr4 74577944 74578107 -81052013 - IAPEz-int LTR ERVK -6285 196 8 1 1153 2888 22 5 94 chr4 74578107 74578510 -81051610 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1153 7242 113 5 2 chr4 74578510 74579647 -81050473 + L1_Mus1 LINE L1 3806 4946 -937 1 144 39450 5 1 0 chr4 74579642 74586214 -81043906 - L1Md_A LINE L1 0 6582 8 1 1154 6471 95 24 6 chr4 74586209 74587835 -81042285 + L1_Mus1 LINE L1 4917 6566 -1 1 1154 3058 65 0 12 chr4 74587969 74588375 -81041745 + L1Md_F2 LINE L1 6181 6581 -1 1 1154 1038 275 58 88 chr4 74590001 74591049 -81039071 - L1_Rod LINE L1 -1599 4281 3309 1 1154 321 155 0 0 chr4 74591109 74591167 -81038953 + CT-rich Low_complexity Low_complexity 3 60 0 1 1154 5187 160 70 2 chr4 74591235 74592189 -81037931 - Lx2B LINE L1 0 7000 5982 1 1154 202 119 23 45 chr4 74592444 74592488 -81037632 + T-rich Low_complexity Low_complexity 2 44 0 1 1154 30409 95 26 15 chr4 74592505 74598775 -81031345 - L1Md_F2 LINE L1 -12 6570 237 1 1154 573 183 49 7 chr4 74599064 74599207 -81030913 - Lx4A LINE L1 -877 6181 6033 1 1154 3046 192 37 35 chr4 74600281 74600397 -81029723 - RMER20B LTR ERVK 0 627 517 1 1154 1387 170 137 38 chr4 74600397 74600769 -81029351 + RLTR9E LTR ERVK 1 409 0 1 1154 3046 192 37 35 chr4 74600769 74601278 -81028842 - RMER20B LTR ERVK -111 516 1 1 1154 23 0 0 0 chr4 74602144 74602167 -81027953 + AT_rich Low_complexity Low_complexity 1 23 0 1 1154 293 333 90 0 chr4 74602310 74602454 -81027666 - L2a LINE L2 -1 3425 3269 1 1154 393 296 70 5 chr4 74602468 74602682 -81027438 + L1M2 LINE L1 5039 5266 -877 1 1154 1675 239 83 24 chr4 74602691 74603824 -81026296 + L1_Rod LINE L1 513 1727 -4120 1 1154 897 175 0 55 chr4 74603836 74604017 -81026103 + MTC LTR MaLR 1 171 -236 1 1154 207 0 0 0 chr4 74604017 74604040 -81026080 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1154 8165 25 0 0 chr4 74604043 74605387 -81024733 - L1Md_T LINE L1 -2 6580 5237 1 1154 1048 208 70 13 chr4 74605387 74605616 -81024504 + MTC LTR MaLR 175 416 -5 1 1154 1992 170 90 2 chr4 74605727 74606139 -81023981 - RLTR11A LTR ERVK -72 456 9 1 1154 1864 247 62 32 chr4 74606165 74606797 -81023323 + L1_Rod LINE L1 1919 2569 -3278 1 1154 2330 189 77 79 chr4 74606798 74607368 -81022752 - RMER4B LTR ERVK 0 585 17 1 1154 1566 108 0 12 chr4 74607407 74607651 -81022469 - MurERV4-int LTR ERVK -64 5196 4956 1 1154 1676 240 44 81 chr4 74607685 74608229 -81021891 - MurERV4-int LTR ERVK -3513 1747 1224 1 1154 26 50 0 0 chr4 74608234 74608274 -81021846 + AT_rich Low_complexity Low_complexity 1 40 0 1 1154 7573 48 3 3 chr4 74608299 74609666 -81020454 - L1Md_F2 LINE L1 -1 6581 5214 1 1154 7635 127 15 11 chr4 74609666 74610886 -81019234 - Lx3A LINE L1 -18 6963 5739 1 1154 23889 112 69 7 chr4 74610896 74612593 -81017527 - L1_Mus3 LINE L1 0 6638 4902 1 1154 522 31 0 0 chr4 74612593 74612657 -81017463 + (CATA)n Simple_repeat Simple_repeat 3 66 0 1 1154 23889 120 125 14 chr4 74612657 74614244 -81015876 - L1_Mus3 LINE L1 -985 4901 2876 1 1154 1246 13 25 0 chr4 74614244 74614402 -81015718 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 1 1154 23889 122 123 16 chr4 74614402 74616177 -81013943 - L1_Mus3 LINE L1 -3011 2875 1109 1 1154 1201 127 21 0 chr4 74616177 74616366 -81013754 - B2_Mm2 SINE B2 -2 193 1 1 1154 6042 141 104 36 chr4 74616366 74617329 -81012791 - L1_Mus3 LINE L1 -5876 1108 52 1 1154 10606 158 24 10 chr4 74617326 74618158 -81011962 - L1_Mur1 LINE L1 -2675 3211 2366 1 1154 1401 93 0 25 chr4 74618158 74618356 -81011764 - B2_Mm2 SINE B2 -2 193 1 1 1154 10606 158 24 10 chr4 74618356 74619448 -81010672 - L1_Mur1 LINE L1 -3521 2365 1272 1 1154 297 0 0 0 chr4 74619448 74619481 -81010639 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1154 10606 126 47 18 chr4 74619481 74620458 -81009662 - L1_Mur1 LINE L1 -5713 1271 4 1 1154 1161 181 5 10 chr4 74620461 74620668 -81009452 - MurERV4-int LTR ERVK -4027 1233 1028 1 1154 821 217 75 15 chr4 74620668 74620935 -81009185 + L1_Rod LINE L1 2565 2847 -3000 1 1154 386 233 76 42 chr4 74620988 74621181 -81008939 + L1_Rod LINE L1 4270 4510 -1633 1 1154 786 218 96 0 chr4 74621179 74621418 -81008702 + Lx9 LINE L1 7382 7643 -1 1 1154 546 251 128 50 chr4 74621522 74621628 -81008492 + L1_Rod LINE L1 5488 5593 -707 1 1154 4731 72 6 3 chr4 74621628 74622250 -81007870 + L1_Mus1 LINE L1 5944 6567 0 1 1154 546 251 128 50 chr4 74622250 74622441 -81007679 + L1_Rod LINE L1 5594 5808 -492 1 1154 255 355 9 0 chr4 74622704 74622814 -81007306 - L2a LINE L2 -257 3169 3059 1 1154 2181 208 110 17 chr4 74622986 74623466 -81006654 + RLTR11A LTR ERVK 1 525 -3 1 1154 268 352 120 17 chr4 74623504 74623738 -81006382 - L2a LINE L2 -978 2441 2184 1 1154 429 289 99 19 chr4 74624451 74624613 -81005507 + RMER15 LTR ERVL 372 546 -29 1 1154 359 269 24 30 chr4 74624620 74624785 -81005335 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 1154 356 263 29 35 chr4 74624859 74625032 -81005088 + (TG)n Simple_repeat Simple_repeat 2 173 0 1 1154 518 222 17 12 chr4 74625100 74625273 -81004847 + (TATG)n Simple_repeat Simple_repeat 1 174 0 1 1154 194 348 113 7 chr4 74625782 74625924 -81004196 + MIR SINE MIR 90 246 -16 1 1154 5052 55 9 0 chr4 74626014 74626649 -81003471 + L1Md_F2 LINE L1 5940 6580 -2 1 1154 21 0 0 0 chr4 74627721 74627742 -81002378 + AT_rich Low_complexity Low_complexity 1 21 0 1 1154 232 304 103 22 chr4 74628204 74628386 -81001734 + MIRc SINE MIR 4 199 -9 1 1154 720 205 0 13 chr4 74628519 74628672 -81001448 + MYSERV-int LTR ERVK 4006 4156 -2394 1 1154 3088 174 79 14 chr4 74628672 74629314 -81000806 - L1_Mur2 LINE L1 -757 5120 4437 1 1154 6317 144 35 13 chr4 74629327 74630393 -80999727 - Lx LINE L1 -18 6636 5577 1 1154 5209 152 33 13 chr4 74630385 74631076 -80999044 + Lx5 LINE L1 4576 5283 -600 1 1154 3612 115 100 89 chr4 74631076 74631819 -80998301 - RMER17A LTR ERVK 0 751 1 1 1154 5209 177 41 40 chr4 74631819 74632356 -80997764 + Lx5 LINE L1 5284 5788 -98 1 1154 4017 166 133 64 chr4 74632356 74633313 -80996807 - RLTR13D2 LTR ERVK 0 1023 1 1 1154 4778 226 106 20 chr4 74633313 74634431 -80995689 + Lx5 LINE L1 5789 7006 -44 1 1154 183 80 0 0 chr4 74634448 74634473 -80995647 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1154 2438 287 40 43 chr4 74634490 74635477 -80994643 + MYSERV-int LTR ERVK 4153 5136 -1414 1 1154 234 381 67 30 chr4 74635481 74635646 -80994474 + RMER4A LTR ERVK 263 433 -33 1 1154 1129 212 10 54 chr4 74635654 74635968 -80994152 + MYSERV-int LTR ERVK 5311 5610 -940 1 1154 2852 159 65 42 chr4 74635966 74636568 -80993552 + MYSERV6-int LTR ERVK 8339 8954 -5 1 1154 206 270 0 31 chr4 74636690 74636726 -80993394 + polypurine Low_complexity Low_complexity 2 37 0 1 1154 879 124 0 0 chr4 74636726 74636903 -80993217 + (GA)n Simple_repeat Simple_repeat 2 178 0 1 1154 206 270 0 31 chr4 74636903 74636931 -80993189 + polypurine Low_complexity Low_complexity 38 64 0 1 1154 290 270 93 63 chr4 74636931 74637168 -80992952 + RLTR15 LTR ERVK 99 342 -17 1 1154 343 196 318 0 chr4 74637179 74637286 -80992834 + RMER4B LTR ERVK 443 583 -2 1 1154 21 57 0 0 chr4 74637556 74637591 -80992529 + AT_rich Low_complexity Low_complexity 1 35 0 1 1154 225 178 0 0 chr4 74637712 74637757 -80992363 + GA-rich Low_complexity Low_complexity 4 48 0 1 1154 245 352 79 0 chr4 74639455 74639556 -80990564 - B1F1 SINE Alu -5 112 1 1 1154 212 353 68 23 chr4 74640606 74640783 -80989337 + MIRc SINE MIR 83 267 -1 1 1154 606 28 0 0 chr4 74640907 74640979 -80989141 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1154 968 118 7 0 chr4 74640979 74641115 -80989005 - B1_Mus1 SINE Alu -11 137 1 1 1154 32449 70 13 16 chr4 74641710 74646277 -80983843 + L1Md_F LINE L1 313 4924 -959 1 1154 235 183 46 77 chr4 74646277 74646342 -80983778 - RMER20A LTR ERVK -268 248 186 1 1154 32449 70 13 16 chr4 74646342 74646996 -80983124 + L1Md_F LINE L1 4925 5586 -297 1 1154 8141 45 2 0 chr4 74646996 74647989 -80982131 + L1Md_T LINE L1 5587 6581 -1 1 1154 908 255 40 81 chr4 74648076 74648422 -80981698 - Lx9 LINE L1 -42 7602 7271 1 1154 805 69 0 0 chr4 74648395 74648496 -80981624 - L1_Mus2 LINE L1 -491 6075 5975 1 1154 796 91 0 0 chr4 74648496 74648606 -80981514 - B2_Mm2 SINE B2 -77 118 9 1 1154 3285 92 10 14 chr4 74648610 74649094 -80981026 + L1_Mus2 LINE L1 6084 6565 -1 1 1154 857 204 94 72 chr4 74649220 74649580 -80980540 - RLTR9A LTR ERVK 0 368 1 1 1154 411 21 0 0 chr4 74649995 74650043 -80980077 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1 1154 252 0 0 0 chr4 74650989 74651017 -80979103 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1154 1055 80 0 7 chr4 74651017 74651156 -80978964 - B1_Mm SINE Alu -9 138 1 1 1154 8063 51 11 6 chr4 74651361 74653016 -80977104 - L1Md_F3 LINE L1 0 6584 4920 1 1154 23 78 0 0 chr4 74653373 74653424 -80976696 + AT_rich Low_complexity Low_complexity 1 51 0 1 1154 1371 237 129 23 chr4 74654611 74655052 -80975068 - Lx9 LINE L1 -6 7638 7151 1 1154 5759 105 11 40 chr4 74655294 74656315 -80973805 + L1VL4 LINE L1 243 1247 -2312 1 1154 2675 45 3 0 chr4 74656315 74656646 -80973474 + L1Md_F2 LINE L1 6249 6580 -2 1 1154 5759 88 22 88 chr4 74656646 74657296 -80972824 + L1VL4 LINE L1 1248 1842 -1717 1 1154 5150 162 36 33 chr4 74657295 74658759 -80971361 + Lx LINE L1 5189 6653 -1 1 1154 216 0 0 0 chr4 74659057 74659081 -80971039 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1154 573 94 115 0 chr4 74660764 74660884 -80969236 + L1Md_F2 LINE L1 6458 6582 0 1 1154 2868 130 0 17 chr4 74661435 74661451 -80968669 - Lx3A LINE L1 -3 6978 6967 2 1154 203 0 37 0 chr4 74661451 74661478 -80968642 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 2 1154 2868 130 0 17 chr4 74661478 74661931 -80968189 - Lx3A LINE L1 -15 6966 6517 2 1154 5960 100 20 3 chr4 74661931 74662810 -80967310 + Lx3_Mus LINE L1 5649 6542 -467 2 1154 1180 96 75 0 chr4 74663199 74663398 -80966722 + Lx3_Mus LINE L1 5965 6178 -831 2 1154 3339 130 11 8 chr4 74663757 74664277 -80965843 - Lx LINE L1 -2 6652 6131 2 1154 264 149 0 0 chr4 74664628 74664675 -80965445 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1154 305 270 41 73 chr4 74664711 74664931 -80965189 + Lx9 LINE L1 7306 7518 -126 2 1154 448 289 48 32 chr4 74665123 74665373 -80964747 + L1MC LINE L1 4375 4628 -1518 2 1154 628 258 141 5 chr4 74665625 74665824 -80964296 - MTC LTR MaLR -195 226 1 2 1154 209 167 65 32 chr4 74666482 74666544 -80963576 + T-rich Low_complexity Low_complexity 3 66 0 2 1154 360 0 0 0 chr4 74666995 74667035 -80963085 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1154 251 196 0 0 chr4 74667562 74667608 -80962512 + GA-rich Low_complexity Low_complexity 2 47 0 2 1154 1218 103 3 3 chr4 74667608 74667940 -80962180 + (GAAA)n Simple_repeat Simple_repeat 1 332 0 2 1154 393 354 51 37 chr4 74668884 74669101 -80961019 - L1MC4 LINE L1 -1066 6976 6757 2 1154 412 345 97 86 chr4 74669877 74670226 -80959894 - ORR1E LTR MaLR -4 355 3 2 1154 1567 241 104 3 chr4 74670508 74670882 -80959238 + MTD LTR MaLR 8 419 0 2 1154 229 224 0 39 chr4 74670917 74670968 -80959152 - Helitron2Na_Mam RC Helitron? -113 211 163 2 1154 450 79 0 0 chr4 74671408 74671471 -80958649 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 2 1154 3806 74 0 6 chr4 74671686 74672188 -80957932 - L1_Mus2 LINE L1 -1 6565 6067 2 1154 31 26 0 0 chr4 74672574 74672612 -80957508 + AT_rich Low_complexity Low_complexity 1 38 0 2 1154 6419 130 27 7 chr4 74673474 74675366 -80954754 - L1_Mus4 LINE L1 0 6636 4700 2 1154 6544 147 19 2 chr4 74675366 74676535 -80953585 + L1_Mur2 LINE L1 3526 4714 -1163 2 1154 410 334 117 34 chr4 74677030 74677452 -80952668 - MLT2B4 LTR ERVL -16 540 3 2 1154 338 281 27 0 chr4 74677553 74677699 -80952421 + (TA)n Simple_repeat Simple_repeat 2 151 0 2 1154 245 327 16 91 chr4 74677812 74677933 -80952187 + MER20 DNA MER1_type 23 134 -85 2 1154 951 56 0 0 chr4 74678788 74678914 -80951206 + (TG)n Simple_repeat Simple_repeat 2 127 0 2 1154 369 0 0 0 chr4 74679344 74679385 -80950735 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1154 2286 68 35 22 chr4 74679462 74679778 -80950342 + L1_Mus1 LINE L1 6248 6567 0 2 1154 2078 112 12 26 chr4 74679816 74680156 -80949964 - Lx LINE L1 -6 6648 6314 2 1154 3774 154 17 1 chr4 74680168 74680829 -80949291 - L1_Mus2 LINE L1 0 6566 5896 2 1154 320 293 34 95 chr4 74681411 74681558 -80948562 + MLT1B LTR MaLR 18 155 -235 2 1154 611 81 0 10 chr4 74682783 74682883 -80947237 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1154 324 331 96 0 chr4 74682944 74683080 -80947040 + MER31B LTR ERV1 16 164 -302 2 1154 340 302 35 70 chr4 74683091 74683262 -80946858 + MER31B LTR ERV1 226 390 -76 2 1154 180 0 0 0 chr4 74683668 74683688 -80946432 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2 1154 1020 53 8 0 chr4 74683689 74683822 -80946298 - B1_Mm SINE Alu -5 142 9 2 1154 1441 126 58 21 chr4 74683827 74684070 -80946050 - Lx3C LINE L1 -3 6973 6722 2 1154 2641 131 92 0 chr4 74684076 74684542 -80945578 + Lx3B LINE L1 6001 6509 -464 2 1154 1807 57 0 0 chr4 74684542 74684771 -80945349 + L1Md_A LINE L1 6354 6582 0 2 1154 2404 154 18 76 chr4 74684780 74685278 -80944842 + Lx3B LINE L1 6502 6970 -3 2 1154 21 0 0 0 chr4 74685321 74685342 -80944778 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 1301 268 57 81 chr4 74685508 74686187 -80943933 - L1_Rod LINE L1 -1667 4180 3518 2 1154 381 189 9 26 chr4 74686659 74686773 -80943347 - Lx9 LINE L1 -53 7591 7480 2 1154 238 356 34 11 chr4 74687017 74687105 -80943015 - MER96 DNA hAT -1 174 85 2 1154 257 292 130 19 chr4 74687829 74687937 -80942183 - MIRm SINE MIR -105 171 52 2 1154 396 0 0 0 chr4 74688020 74688064 -80942056 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1154 1124 322 18 3 chr4 74688086 74688416 -80941704 - MT2A LTR ERVL -189 344 10 2 1154 282 291 25 83 chr4 74688718 74688838 -80941282 - PB1D10 SINE Alu -1 116 4 2 1154 206 232 27 68 chr4 74689005 74689079 -80941041 + CT-rich Low_complexity Low_complexity 3 73 0 2 1154 207 209 23 0 chr4 74689064 74689107 -80941013 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 2 1154 204 333 84 28 chr4 74690515 74690657 -80939463 + MIR3 SINE MIR 31 180 -28 2 1154 225 0 0 0 chr4 74690768 74690793 -80939327 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1154 33694 44 0 4 chr4 74690841 74696094 -80934026 + L1Md_T LINE L1 261 5589 -297 2 1154 8361 36 1 0 chr4 74696094 74697089 -80933031 + L1Md_T LINE L1 5590 6585 0 2 1154 21 36 0 0 chr4 74697338 74697366 -80932754 + AT_rich Low_complexity Low_complexity 1 28 0 2 1154 2407 245 148 26 chr4 74697366 74698124 -80931996 - Lx4B LINE L1 -1 7057 6208 2 1154 1087 252 28 3 chr4 74698123 74698445 -80931675 + Lx4B LINE L1 5888 6217 -841 2 1154 1471 234 26 24 chr4 74700652 74701111 -80929009 + L1_Rod LINE L1 790 1249 -6359 2 1154 1166 249 96 48 chr4 74701119 74701495 -80928625 + ORR1B1 LTR MaLR 1 394 0 2 1154 2595 267 56 48 chr4 74701495 74702858 -80927262 + ORR1B1-int LTR MaLR 1 1362 -8 2 1154 440 174 153 0 chr4 74702879 74702977 -80927143 + ORR1B1 LTR MaLR 15 127 -267 2 1154 1425 102 44 4 chr4 74702977 74703204 -80926916 - L1_Mm LINE L1 -867 5016 4781 2 1154 7419 60 3 14 chr4 74703203 74704348 -80925772 - L1Md_F2 LINE L1 -12 6570 5433 2 1154 1551 125 0 0 chr4 74704345 74704593 -80925527 - L1_Mm LINE L1 -1094 4789 4542 2 1154 1723 106 0 0 chr4 74704593 74704830 -80925290 + L1_Mus1 LINE L1 6331 6567 0 2 1154 24 53 0 0 chr4 74704830 74704868 -80925252 + AT_rich Low_complexity Low_complexity 1 38 0 2 1154 1254 213 61 4 chr4 74704868 74705132 -80924988 + ORR1B1 LTR MaLR 116 394 0 2 1154 1428 240 64 60 chr4 74705132 74705885 -80924235 + L1_Rod LINE L1 1257 2012 -3835 2 1154 304 248 69 26 chr4 74705888 74706004 -80924116 - L1MC LINE L1 -2941 3205 3085 2 1154 482 260 123 31 chr4 74706327 74706674 -80923446 + L1_Rod LINE L1 3226 3625 -2222 2 1154 382 278 67 82 chr4 74706674 74706882 -80923238 + L1M4 LINE L1 2719 2923 -3223 2 1154 1599 265 68 19 chr4 74706883 74707721 -80922399 + L1_Rod LINE L1 3620 4511 -1632 2 1154 3610 252 53 22 chr4 74707715 74708846 -80921274 + Lx9 LINE L1 6419 7584 -60 2 1154 25 31 0 0 chr4 74709713 74709745 -80920375 + AT_rich Low_complexity Low_complexity 1 32 0 2 1154 1383 195 22 18 chr4 74709992 74710534 -80919586 - L1_Mur3 LINE L1 -4341 1539 985 2 1154 2263 128 14 0 chr4 74710555 74710899 -80919221 + Lx2 LINE L1 6644 6992 -5 2 144 486 299 146 0 chr4 74710953 74711207 -80918913 - L1_Mur3 LINE L1 -6896 832 542 2 1155 26 64 0 0 chr4 74711226 74711273 -80918847 + AT_rich Low_complexity Low_complexity 1 47 0 2 1155 654 310 135 20 chr4 74712216 74712519 -80917601 - RMER20B LTR ERVK -215 412 75 2 1155 2956 59 200 9 chr4 74712961 74713391 -80916729 + RLTR1B LTR ERV1 1 512 0 2 1155 63763 19 0 1 chr4 74713391 74720949 -80909171 + MMERGLN-int LTR ERV1 1 7555 -1 2 1155 2943 61 200 9 chr4 74720950 74721380 -80908740 + RLTR1B LTR ERV1 1 512 0 2 1155 777 278 44 25 chr4 74721684 74722001 -80908119 + RLTR15 LTR ERVK 1 323 -36 2 1155 24 0 0 0 chr4 74722191 74722215 -80907905 + AT_rich Low_complexity Low_complexity 1 24 0 2 1155 352 318 31 71 chr4 74722879 74723201 -80906919 + MYSERV6-int LTR ERVK 113 421 -8538 2 1155 1222 328 59 31 chr4 74723301 74724082 -80906038 + MYSERV6-int LTR ERVK 335 1137 -7822 2 1155 350 294 0 18 chr4 74724101 74724212 -80905908 + MYSERV-int LTR ERVK 4479 4587 -1963 2 1155 2335 139 10 34 chr4 74724224 74724633 -80905487 - Lx2 LINE L1 -1 6996 6598 2 1155 298 212 0 29 chr4 74724779 74724847 -80905273 + MYSERV-int LTR ERVK 4709 4774 -1776 2 1155 611 274 60 86 chr4 74724843 74725188 -80904932 + MYSERV-int LTR ERVK 4843 5080 -1470 2 1155 1367 71 16 0 chr4 74725190 74725372 -80904748 + Lx3B LINE L1 5695 5879 -1094 2 1155 565 151 2 2 chr4 74725363 74725462 -80904658 + Lx3B LINE L1 6499 6597 -461 2 1155 816 202 12 18 chr4 74725462 74725633 -80904487 + MYSERV6-int LTR ERVK 8212 8381 -578 2 1155 1949 234 93 15 chr4 74725638 74726164 -80903956 + RLTR12A LTR ERVK 2 568 0 2 1155 2265 229 39 12 chr4 74726169 74726740 -80903380 + MYSERV-int LTR ERVK 5965 6550 0 2 1155 671 285 59 33 chr4 74726740 74727077 -80903043 + RLTR15 LTR ERVK 1 346 -13 2 1155 373 330 155 19 chr4 74727832 74728039 -80902081 + MER21B LTR ERV1 102 336 -527 2 1155 7873 56 2 4 chr4 74728043 74729589 -80900531 - L1Md_F2 LINE L1 -12 6570 5029 2 1155 521 345 76 50 chr4 74729638 74729995 -80900125 + MER21B LTR ERV1 385 750 -113 2 1155 264 30 0 0 chr4 74730440 74730473 -80899647 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1155 288 0 0 0 chr4 74730473 74730504 -80899616 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1155 915 232 27 162 chr4 74732474 74732948 -80897172 + Lx9 LINE L1 7227 7636 -8 2 1155 734 294 31 19 chr4 74733019 74733279 -80896841 + Lx8 LINE L1 6226 6488 -985 2 1155 29 0 0 0 chr4 74733289 74733318 -80896802 + AT_rich Low_complexity Low_complexity 1 29 0 2 1155 313 312 86 14 chr4 74733341 74733481 -80896639 + Lx8 LINE L1 6584 6733 -740 2 1155 21 36 0 0 chr4 74733494 74733522 -80896598 + AT_rich Low_complexity Low_complexity 1 28 0 2 1155 1517 236 17 136 chr4 74734428 74734964 -80895156 - Lx9 LINE L1 -431 7213 6742 2 1155 353 314 0 0 chr4 74734998 74735100 -80895020 - Lx9 LINE L1 -1237 6407 6306 2 1155 1098 226 91 64 chr4 74735947 74736386 -80893734 + Lx7 LINE L1 7246 7696 0 2 1155 375 382 45 10 chr4 74737034 74737235 -80892885 + L2 LINE L2 64 271 -3148 2 1155 1138 172 9 5 chr4 74737721 74737943 -80892177 - L1_Mur2 LINE L1 -565 5312 5090 2 1155 744 72 63 0 chr4 74737940 74738051 -80892069 + Lx LINE L1 6281 6398 -256 2 1155 24 53 0 0 chr4 74739764 74739802 -80890318 + AT_rich Low_complexity Low_complexity 1 38 0 2 1155 692 360 32 37 chr4 74739811 74740212 -80889908 + MLT1D LTR MaLR 81 479 -26 2 1155 16002 175 38 46 chr4 74740474 74743215 -80886905 + Lx LINE L1 368 3138 -2745 2 1155 597 122 0 0 chr4 74743215 74743305 -80886815 - B1_Mur4 SINE Alu 0 150 61 2 1155 16002 175 38 46 chr4 74743305 74744842 -80885278 + Lx LINE L1 3139 4694 -1189 2 1155 35317 38 0 0 chr4 74744828 74749525 -80880595 + L1Md_T LINE L1 795 5589 -297 2 1155 8947 7 0 0 chr4 74749525 74750521 -80879599 + L1Md_T LINE L1 5590 6585 0 2 1155 279 0 0 0 chr4 74750547 74750578 -80879542 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1155 6723 154 10 16 chr4 74750578 74752565 -80877555 + Lx LINE L1 4670 6648 -6 2 1155 240 86 0 0 chr4 74753261 74753296 -80876824 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1155 5048 72 24 6 chr4 74753413 74754093 -80876027 - L1Md_F2 LINE L1 0 6582 5891 2 1155 1113 68 0 7 chr4 74754100 74754248 -80875872 + B1_Mm SINE Alu 1 147 0 2 1155 7117 77 16 13 chr4 74755457 74756081 -80874039 - L1_Mus1 LINE L1 -1 6566 5946 3 1155 1053 91 67 11 chr4 74756081 74756107 -80874013 - B2_Mm1a SINE B2 -2 191 161 3 1155 207 0 0 0 chr4 74756107 74756130 -80873990 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1155 1053 91 67 11 chr4 74756130 74756281 -80873839 - B2_Mm1a SINE B2 -33 160 4 3 1155 8319 110 15 5 chr4 74756281 74757604 -80872516 - L1_Mus1 LINE L1 -622 5945 4611 3 1155 10485 121 2 1 chr4 74757578 74759195 -80870925 + L1_Mm LINE L1 2325 3942 -1941 3 1155 1031 253 135 29 chr4 74759199 74759766 -80870354 + Lx9 LINE L1 5454 6102 -1542 3 1155 237 262 25 0 chr4 74759816 74759896 -80870224 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 3 1155 496 274 85 51 chr4 74759916 74760151 -80869969 + RLTR12B LTR ERVK 42 284 -244 3 1155 2425 315 53 23 chr4 74760173 74761179 -80868941 + Lx9 LINE L1 6405 7440 -204 3 1155 627 14 0 0 chr4 74761190 74761262 -80868858 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1155 1251 248 74 6 chr4 74761336 74761673 -80868447 + Lx9 LINE L1 6960 7319 -325 3 1155 261 83 0 0 chr4 74762319 74762355 -80867765 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1155 21 100 0 0 chr4 74762445 74762515 -80867605 + AT_rich Low_complexity Low_complexity 1 70 0 3 1155 305 328 163 24 chr4 74762658 74762867 -80867253 + Lx7 LINE L1 6260 6497 -1199 3 1155 1213 225 44 4 chr4 74763392 74763664 -80866456 + ORR1C1 LTR MaLR 2 284 -94 3 1155 396 324 70 21 chr4 74763824 74763983 -80866137 + B3A SINE B2 41 205 -11 3 1155 255 61 0 0 chr4 74764141 74764174 -80865946 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1155 402 21 0 0 chr4 74764174 74764220 -80865900 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1155 354 302 194 17 chr4 74764461 74764636 -80865484 + MLT2B4 LTR ERVL 3 208 -348 3 1155 274 250 142 19 chr4 74764649 74764755 -80865365 + PB1D7 SINE Alu 2 120 0 3 1155 317 294 22 87 chr4 74764757 74764805 -80865315 + MLT2B4 LTR ERVL 392 439 -128 3 1155 849 285 55 68 chr4 74764805 74765189 -80864931 - MTE2a LTR MaLR 0 379 1 3 1155 317 294 22 87 chr4 74765189 74765278 -80864842 + MLT2B4 LTR ERVL 440 520 -47 3 1155 234 0 0 0 chr4 74765361 74765387 -80864733 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 3 1155 687 52 0 20 chr4 74765387 74765485 -80864635 - B1_Mm SINE Alu -12 135 40 3 1155 33 0 0 0 chr4 74765498 74765531 -80864589 + AT_rich Low_complexity Low_complexity 1 33 0 3 1155 286 369 0 37 chr4 74768626 74768733 -80861387 - MLT1A0 LTR MaLR -21 344 242 3 1155 1232 224 38 53 chr4 74768780 74769135 -80860985 + ORR1D1 LTR MaLR 1 359 -25 3 1155 527 299 165 13 chr4 74769110 74769334 -80860786 - MTD LTR MaLR -160 259 2 3 1155 361 324 16 7 chr4 74769415 74769599 -80860521 - RMER1A Other Other -540 526 432 3 1155 473 252 15 52 chr4 74769597 74769634 -80860486 + RMER1B Other Other 133 167 -899 3 1155 1853 210 34 204 chr4 74769634 74770370 -80859750 + RMER19C LTR ERVK 1 611 0 3 1155 473 252 15 52 chr4 74770370 74770466 -80859654 + RMER1B Other Other 168 261 -805 3 1155 338 300 130 11 chr4 74770627 74770974 -80859146 + L1M4 LINE L1 3939 4326 -1820 3 1155 21 0 0 0 chr4 74771171 74771192 -80858928 + AT_rich Low_complexity Low_complexity 1 21 0 3 1155 2015 116 20 41 chr4 74771216 74771559 -80858561 - Lx2 LINE L1 -1 6996 6661 3 1155 420 156 0 0 chr4 74771560 74771669 -80858451 + (TCTCTG)n Simple_repeat Simple_repeat 2 110 0 3 1155 980 79 65 0 chr4 74771933 74772072 -80858048 + B1_Mus1 SINE Alu 1 148 0 3 1155 312 391 48 85 chr4 74772930 74773217 -80856903 + B4A SINE B4 6 280 -12 3 1155 381 75 0 0 chr4 74773247 74773300 -80856820 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1155 387 0 0 0 chr4 74774224 74774267 -80855853 + (CATA)n Simple_repeat Simple_repeat 3 45 0 3 1155 585 23 47 0 chr4 74775664 74775750 -80854370 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 3 1155 1664 158 20 13 chr4 74776187 74776488 -80853632 + Lx2A1 LINE L1 6701 7003 -5 3 1155 235 314 81 0 chr4 74777187 74777273 -80852847 + L1_Rod LINE L1 493 585 -6587 3 1155 36358 52 12 4 chr4 74777279 74782751 -80847369 + L1Md_T LINE L1 104 5586 -297 3 1155 8005 56 0 0 chr4 74782751 74783747 -80846373 + L1Md_T LINE L1 5587 6582 0 3 1155 1356 286 78 64 chr4 74783900 74785000 -80845120 + L1_Mur3 LINE L1 1219 2337 -3543 3 1155 6109 169 57 4 chr4 74785000 74786134 -80843986 - Lx2B LINE L1 -3 6997 5804 3 1155 1356 286 78 64 chr4 74786134 74786166 -80843954 + L1_Mur3 LINE L1 2338 2366 -3514 3 1155 485 161 47 125 chr4 74786177 74786305 -80843815 + L1_Mur2 LINE L1 4665 4782 -1095 3 1155 672 264 39 0 chr4 74786302 74786484 -80843636 - Lx8 LINE L1 -660 6813 6625 3 1155 588 90 44 7 chr4 74786481 74786614 -80843506 + L1_Mus2 LINE L1 6413 6582 0 3 1155 439 340 65 32 chr4 74786812 74787058 -80843062 - Lx8 LINE L1 -830 6643 6390 3 1155 324 218 39 10 chr4 74787095 74787197 -80842923 - Lx9 LINE L1 -7 7637 7533 3 1155 267 31 0 0 chr4 74787198 74787230 -80842890 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1155 252 262 33 0 chr4 74787230 74787291 -80842829 - Lx8 LINE L1 -700 6773 6711 3 1155 236 196 0 0 chr4 74787292 74787343 -80842777 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1155 1727 288 52 21 chr4 74787402 74788059 -80842061 - Lx9 LINE L1 -136 7508 6832 3 1155 556 254 40 26 chr4 74788060 74788275 -80841845 + L1_Mur3 LINE L1 4272 4491 -1389 3 1155 1123 248 84 135 chr4 74788790 74789219 -80840901 + MTD LTR MaLR 5 411 -8 3 1155 2027 295 43 102 chr4 74789240 74790321 -80839799 + MTD-int LTR MaLR 17 1162 -96 3 1155 4647 268 24 38 chr4 74790616 74791437 -80838683 + L1_Rod LINE L1 443 1265 -6343 3 1155 1854 108 0 30 chr4 74791437 74791732 -80838388 + Lx LINE L1 6369 6654 0 3 1155 4647 224 32 64 chr4 74791732 74792457 -80837663 + L1_Rod LINE L1 1266 1939 -3908 3 1155 1491 52 5 5 chr4 74792457 74792650 -80837470 + B2_Mm1a SINE B2 1 193 0 3 1155 4647 224 32 64 chr4 74792650 74793387 -80836733 + L1_Rod LINE L1 1940 2686 -3161 3 1155 324 0 0 0 chr4 74793417 74793453 -80836667 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1155 405 0 0 0 chr4 74795050 74795095 -80835025 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1155 279 0 0 0 chr4 74795095 74795125 -80834995 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1155 1461 205 111 47 chr4 74795214 74795766 -80834354 + L1_Rod LINE L1 2670 3256 -2591 3 1155 3070 226 152 41 chr4 74795757 74796854 -80833266 + L1_Rod LINE L1 3982 5200 -647 3 1155 1581 288 17 26 chr4 74797152 74797615 -80832505 + Lx9 LINE L1 6353 6811 -833 3 1155 281 141 47 0 chr4 74797620 74797684 -80832436 - Lx2 LINE L1 -931 6066 6000 3 1155 1463 178 233 0 chr4 74797680 74798040 -80832080 + Lx2A1 LINE L1 4176 4619 -1267 3 1155 865 93 0 0 chr4 74798040 74798158 -80831962 + B1_Mus1 SINE Alu 3 120 -28 3 1155 677 259 81 31 chr4 74798377 74798600 -80831520 + LTRIS4 LTR ERV1 274 507 0 3 1155 255 161 0 0 chr4 74798622 74798678 -80831442 + A-rich Low_complexity Low_complexity 1 56 0 3 1155 2034 190 0 28 chr4 74798678 74799015 -80831105 + Lx2A1 LINE L1 4604 4937 -949 3 1155 423 0 0 0 chr4 74799015 74799062 -80831058 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 3 1155 1043 75 0 0 chr4 74799062 74799195 -80830925 - B1_Mus2 SINE Alu -13 134 2 3 1155 2034 190 0 28 chr4 74799195 74799283 -80830837 + Lx2A1 LINE L1 4938 5017 -869 3 1155 11194 109 26 36 chr4 74799283 74799798 -80830322 - RLTR22_Mur LTR ERVK 0 1848 1322 3 1155 342 0 0 0 chr4 74799798 74799836 -80830284 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1155 11194 109 26 36 chr4 74799836 74801186 -80828934 - RLTR22_Mur LTR ERVK -527 1321 2 3 1155 4591 157 13 1 chr4 74801186 74802137 -80827983 + Lx2A1 LINE L1 5004 5978 -1030 3 1155 7798 70 1 0 chr4 74802208 74803291 -80826829 - L1_Mus1 LINE L1 0 6567 5482 3 1155 390 42 0 0 chr4 74803597 74803645 -80826475 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1155 3335 101 13 61 chr4 74803977 74804515 -80825605 + RLTR1B LTR ERV1 1 512 0 3 1155 218 312 111 21 chr4 74804787 74804931 -80825189 - MIRb SINE MIR -27 241 85 3 1155 443 248 98 0 chr4 74805146 74805279 -80824841 + MLT1A1 LTR MaLR 261 406 -2 3 1155 311 350 42 48 chr4 74805347 74805512 -80824608 + MLT1A LTR MaLR 206 369 -5 3 1155 5622 121 6 23 chr4 74805531 74805674 -80824446 + L1_Mus4 LINE L1 5740 5882 -754 3 1155 6357 54 20 0 chr4 74805674 74806466 -80823654 + RLTR13C2 LTR ERVK 1 808 0 3 1155 5622 121 6 23 chr4 74806466 74806957 -80823163 + L1_Mus4 LINE L1 5883 6368 -268 3 1155 2925 74 10 2 chr4 74806957 74807350 -80822770 - MTA_Mm LTR MaLR 0 396 1 3 1155 5622 121 6 23 chr4 74807350 74807627 -80822493 + L1_Mus4 LINE L1 6369 6636 0 3 1155 496 200 73 15 chr4 74807714 74807851 -80822269 - RCHARR1 DNA MER1_type -522 452 308 3 1155 555 314 25 6 chr4 74807948 74808105 -80822015 - RCHARR1 DNA MER1_type -814 160 1 3 1155 906 10 0 0 chr4 74808375 74808478 -80821642 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 1155 354 23 0 0 chr4 74808478 74808520 -80821600 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1155 2451 216 47 19 chr4 74808809 74809497 -80820623 + L1_Rod LINE L1 3734 4440 -1407 3 1155 5041 141 22 16 chr4 74810277 74811862 -80818258 + L1VL4 LINE L1 10 1595 -1964 3 1155 3681 266 47 11 chr4 74811860 74812919 -80817201 + Lx2B LINE L1 5884 6980 -20 3 1155 236 298 91 55 chr4 74812919 74813002 -80817118 - MTD LTR MaLR -288 131 47 3 1155 195 42 0 0 chr4 74813002 74813026 -80817094 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 1155 236 298 91 55 chr4 74813026 74813052 -80817068 - MTD LTR MaLR -373 46 19 3 1155 219 45 43 22 chr4 74813356 74813402 -80816718 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1155 2205 159 0 0 chr4 74813406 74813759 -80816361 - Lx3C LINE L1 -376 6600 6248 3 1155 1864 147 47 7 chr4 74813760 74814061 -80816059 + Lx3C LINE L1 6656 6968 -8 3 1155 207 139 0 0 chr4 74814065 74814101 -80816019 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 1155 199 182 15 29 chr4 74814129 74814197 -80815923 + T-rich Low_complexity Low_complexity 2 68 0 3 1155 182 37 37 0 chr4 74814214 74814241 -80815879 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1155 548 272 0 45 chr4 74814943 74815097 -80815023 + B1_Mus2 SINE Alu 1 147 0 3 1155 3376 87 18 18 chr4 74815266 74815759 -80814361 + L1_Mus3 LINE L1 6139 6631 -7 3 1155 4125 170 95 15 chr4 74815903 74816816 -80813304 + L1_Mur2 LINE L1 4372 5357 -520 3 1155 1300 158 45 30 chr4 74816816 74817083 -80813037 + Lx3B LINE L1 6698 6968 -5 3 1155 222 37 0 0 chr4 74817094 74817121 -80812999 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 1155 1025 158 0 0 chr4 74817134 74817324 -80812796 - Lx2A1 LINE L1 -129 5754 5565 3 1155 2851 224 34 9 chr4 74817326 74818120 -80812000 + Lx4B LINE L1 6114 6954 -46 3 1155 294 50 0 0 chr4 74818137 74818177 -80811943 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 3 1155 396 0 0 0 chr4 74818272 74818316 -80811804 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1155 453 36 0 0 chr4 74818939 74818994 -80811126 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1155 278 274 10 10 chr4 74819748 74819836 -80810284 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1155 252 100 0 0 chr4 74819836 74819876 -80810244 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1155 278 274 10 10 chr4 74819876 74819890 -80810230 + (TA)n Simple_repeat Simple_repeat 1 14 0 4 1155 385 318 0 9 chr4 74820043 74820151 -80809969 - ID_B1 SINE B4 -34 190 84 4 1155 1151 69 0 0 chr4 74820317 74820462 -80809658 - B1_Mm SINE Alu -2 145 1 4 1155 283 179 63 0 chr4 74820486 74820581 -80809539 + (TA)n Simple_repeat Simple_repeat 1 101 0 4 1155 197 65 32 0 chr4 74820602 74820633 -80809487 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 4 1155 386 350 0 8 chr4 74821059 74821180 -80808940 + RSINE1 SINE B4 44 163 -2 4 1155 3190 193 19 5 chr4 74821467 74822111 -80808009 - Lx5 LINE L1 -496 5381 4729 4 1155 6636 196 59 9 chr4 74822107 74823714 -80806406 + Lx5 LINE L1 5371 7047 -3 4 1155 501 310 27 27 chr4 74824486 74824632 -80805488 + ORR1D2 LTR MaLR 1 146 -224 4 1155 6390 91 17 22 chr4 74824636 74825577 -80804543 + Lx3_Mus LINE L1 6074 7009 0 4 1155 289 293 109 36 chr4 74825673 74825811 -80804309 + MER5A1 DNA MER1_type 1 148 -18 4 1155 21 0 0 0 chr4 74825811 74825832 -80804288 + AT_rich Low_complexity Low_complexity 1 21 0 4 1155 1528 194 19 10 chr4 74825971 74826284 -80803836 - Lx LINE L1 -20 6634 6319 4 1155 432 0 0 0 chr4 74826559 74826607 -80803513 + (TTG)n Simple_repeat Simple_repeat 2 49 0 4 1155 2094 143 0 12 chr4 74826978 74827311 -80802809 + ORR1A4 LTR MaLR 1 329 0 4 1155 2813 57 0 0 chr4 74828012 74828362 -80801758 - L1_Mus1 LINE L1 0 6567 6218 4 1155 4996 79 8 0 chr4 74828363 74829253 -80800867 + L1_Mus1 LINE L1 5341 6235 -332 4 1155 626 370 36 41 chr4 74829640 74830004 -80800116 + MTD LTR MaLR 57 418 -1 4 1155 472 280 83 32 chr4 74831335 74831612 -80798508 - LTR37A LTR ERV1 -2 424 134 4 1155 4556 249 55 22 chr4 74831637 74831799 -80798321 - Lx4B LINE L1 -10 6990 6787 4 1155 3482 84 2 6 chr4 74831799 74832268 -80797852 - L1_Mus1 LINE L1 0 6567 6101 4 1155 4573 223 28 25 chr4 74832268 74833339 -80796781 - Lx4B LINE L1 -214 6786 5716 4 1155 3041 150 116 22 chr4 74833342 74833963 -80796157 + L1_Mur2 LINE L1 4642 5320 -557 4 1155 7105 77 1 1 chr4 74834979 74835944 -80794176 - L1_Mm LINE L1 -1433 4450 3486 4 1155 849 320 124 22 chr4 74835944 74835959 -80794161 + ORR1E LTR MaLR 3 17 -342 4 1155 513 0 0 0 chr4 74835959 74836016 -80794104 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 4 1155 1208 94 0 11 chr4 74836016 74836198 -80793922 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 1155 783 83 0 0 chr4 74836200 74836308 -80793812 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 4 1155 849 320 124 22 chr4 74836308 74836611 -80793509 + ORR1E LTR MaLR 18 357 -2 4 1155 1225 269 76 6 chr4 74836632 74836973 -80793147 + ORR1E-int LTR MaLR 23 387 -1193 4 1155 1628 307 146 37 chr4 74837020 74837888 -80792232 + ORR1E-int LTR MaLR 459 1529 -51 4 1155 789 274 11 22 chr4 74837888 74838071 -80792049 + ORR1E LTR MaLR 3 183 -176 4 1155 332 321 127 36 chr4 74838104 74838316 -80791804 + ORR1E LTR MaLR 149 361 -9 4 1155 276 287 33 44 chr4 74838325 74838416 -80791704 + RSINE1 SINE B4 76 165 0 4 1155 576 0 0 0 chr4 74838483 74838547 -80791573 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 4 1155 512 283 19 65 chr4 74838565 74838720 -80791400 + RMER20B LTR ERVK 20 167 -460 4 1155 581 313 131 3 chr4 74838831 74839174 -80790946 + RMER20B LTR ERVK 131 516 0 4 1155 383 388 35 0 chr4 74839225 74839395 -80790725 - MER5A DNA MER1_type -12 177 2 4 1155 692 324 0 0 chr4 74840344 74840554 -80789566 + B3 SINE B2 3 212 -4 4 1155 1065 273 117 77 chr4 74841096 74841718 -80788402 + L1M2 LINE L1 3039 3667 -2476 4 1155 486 0 0 0 chr4 74841718 74841772 -80788348 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1155 1065 273 117 77 chr4 74841772 74842082 -80788038 + L1M2 LINE L1 3668 4000 -2143 4 1155 192 77 0 0 chr4 74842082 74842108 -80788012 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 144 1065 273 117 77 chr4 74842108 74842273 -80787847 + L1M2 LINE L1 4001 4180 -1963 4 1156 1566 245 142 11 chr4 74842494 74843042 -80787078 - Lx9 LINE L1 -13 7631 7012 4 1156 455 287 55 6 chr4 74843043 74843225 -80786895 + L1M2 LINE L1 3370 3560 -2583 4 1156 1224 249 106 3 chr4 74843264 74843586 -80786534 - Lx9 LINE L1 -644 7000 6646 4 1156 7920 51 3 0 chr4 74843603 74844875 -80785245 - L1Md_F3 LINE L1 -20 6564 5289 4 1156 1033 272 94 67 chr4 74844868 74845582 -80784538 - Lx9 LINE L1 -1002 6642 5910 4 1156 2160 195 60 5 chr4 74845582 74846014 -80784106 - RMER6B LTR ERVK 0 461 6 4 1156 5365 243 97 36 chr4 74846018 74847894 -80782226 - Lx9 LINE L1 -1729 5915 3890 4 1156 531 0 0 0 chr4 74847894 74847953 -80782167 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 4 1156 858 309 90 27 chr4 74847955 74848168 -80781952 - Lx9 LINE L1 -2730 3117 2885 4 1156 456 19 0 0 chr4 74848168 74848221 -80781899 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 4 1156 858 309 90 27 chr4 74848221 74848563 -80781557 - Lx9 LINE L1 -2963 2884 2527 4 1156 2349 251 34 9 chr4 74848615 74849352 -80780768 - Lx9 LINE L1 -3446 2401 1647 4 1156 2542 250 60 19 chr4 74849360 74850087 -80780033 - Lx9 LINE L1 -180 7464 6708 4 1156 1222 214 9 49 chr4 74850081 74850410 -80779710 - L1_Rod LINE L1 -3221 2626 2311 4 1156 238 299 28 18 chr4 74850584 74850693 -80779427 + L1M1 LINE L1 5633 5742 -558 4 1156 561 115 0 0 chr4 74851079 74851175 -80778945 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1156 2879 141 100 33 chr4 74852368 74852926 -80777194 + RLTR1D LTR ERV1 1 605 0 4 1156 991 304 43 27 chr4 74854469 74855098 -80775022 + L1M2 LINE L1 4351 4989 -1154 4 1156 524 311 15 77 chr4 74855380 74855744 -80774376 + L1M2 LINE L1 5125 5505 -795 4 1156 990 37 30 0 chr4 74856295 74856429 -80773691 - L1Md_F3 LINE L1 -14 6570 6433 4 1156 720 35 0 0 chr4 74856814 74856901 -80773219 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 1156 216 0 0 0 chr4 74858317 74858341 -80771779 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1156 317 367 0 0 chr4 74858429 74858519 -80771601 - MLT1I LTR MaLR -223 188 99 4 1156 504 0 0 0 chr4 74860064 74860120 -80770000 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1156 579 277 40 13 chr4 74860147 74860297 -80769823 - B3A SINE B2 -44 154 1 4 1156 681 160 77 30 chr4 74860311 74860479 -80769641 + Lx LINE L1 6478 6653 -1 4 1156 638 274 80 0 chr4 74861113 74861314 -80768806 + ID_B1 SINE B4 5 221 -3 4 1156 1243 237 8 0 chr4 74861567 74861816 -80768304 + ORR1C1 LTR MaLR 127 377 -1 4 1156 214 330 0 22 chr4 74861867 74861957 -80768163 - MIR SINE MIR 0 262 175 4 1156 783 263 214 3 chr4 74862187 74862496 -80767624 - ORR1D1 LTR MaLR 0 374 1 4 1156 4398 262 33 51 chr4 74862501 74863413 -80766707 - ORR1D1-int LTR MaLR -6 1364 478 4 1156 2684 7 0 0 chr4 74863413 74863714 -80766406 + L1Md_A LINE L1 6282 6582 0 4 1156 4398 266 34 50 chr4 74863714 74864053 -80766067 - ORR1D1-int LTR MaLR -893 477 133 4 1156 1163 132 0 16 chr4 74864053 74864238 -80765882 - B2_Mm2 SINE B2 -9 186 5 4 1156 548 355 52 41 chr4 74864238 74864270 -80765850 - ORR1D1-int LTR MaLR -1831 132 100 4 1156 21 36 0 0 chr4 74864333 74864361 -80765759 + AT_rich Low_complexity Low_complexity 1 28 0 4 1156 1079 139 65 25 chr4 74864603 74864703 -80765417 + Lx3A LINE L1 6770 6878 -103 4 1156 381 22 0 0 chr4 74864703 74864749 -80765371 + (CTGGGG)n Simple_repeat Simple_repeat 1 46 0 4 1156 1079 139 65 25 chr4 74864749 74864847 -80765273 + Lx3A LINE L1 6879 6976 -5 4 1156 592 136 48 10 chr4 74864856 74864960 -80765160 - B2_Mm2 SINE B2 -7 188 81 4 1156 3619 289 41 51 chr4 74865625 74866556 -80763564 - L1_Mur3 LINE L1 -571 5309 4444 4 1156 1184 41 7 7 chr4 74866556 74866704 -80763416 - B1_Mus1 SINE Alu 0 148 1 4 1156 3619 289 41 51 chr4 74866704 74867557 -80762563 - L1_Mur3 LINE L1 -1437 4443 3543 4 1156 245 24 0 106 chr4 74867564 74867611 -80762509 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1156 255 228 29 10 chr4 74867722 74867824 -80762296 - Lx9 LINE L1 -16 7628 7525 4 1156 4920 218 45 26 chr4 74867821 74869264 -80760856 - Lx6 LINE L1 -1325 6135 4650 4 1156 2610 96 2 73 chr4 74869858 74870051 -80760069 + MTA_Mm LTR MaLR 1 189 -207 4 1156 1732 28 19 0 chr4 74870051 74870265 -80759855 + L1Md_F2 LINE L1 6360 6577 -5 4 1156 2610 96 2 73 chr4 74870265 74870497 -80759623 + MTA_Mm LTR MaLR 190 396 0 4 1156 342 390 61 24 chr4 74870639 74870852 -80759268 - LTR16A LTR ERVL -15 436 216 4 1156 2153 178 121 63 chr4 74870935 74871487 -80758633 - RLTR31A_Mm LTR ERVK 0 584 1 4 1156 3797 204 107 40 chr4 74871488 74873149 -80756971 - RMER3D-int LTR ERVK -1 2841 1067 4 1156 208 0 0 59 chr4 74873149 74873183 -80756937 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1156 2541 186 78 27 chr4 74873183 74873234 -80756886 - RMER3D-int LTR ERVK -1776 1066 1015 4 1156 907 255 51 54 chr4 74873261 74873706 -80756414 - RMER3D-int LTR ERVK -1993 849 70 4 1156 369 0 0 0 chr4 74873706 74873747 -80756373 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 1156 907 270 82 53 chr4 74873747 74873816 -80756304 - RMER3D-int LTR ERVK -2773 69 4 4 1156 2280 141 0 0 chr4 74873816 74874184 -80755936 - L1_Mur2 LINE L1 -687 5190 4823 4 1156 1533 193 8 58 chr4 74874178 74874541 -80755579 + Lx LINE L1 6267 6611 -43 4 1156 1909 110 25 62 chr4 74874541 74874899 -80755221 + RLTR31_Mm LTR ERVK 1 345 -216 4 1156 5082 187 60 62 chr4 74875084 74876778 -80753342 + RMER3D-int LTR ERVK 163 2330 -512 4 1156 418 210 0 48 chr4 74876787 74876870 -80753250 + RMER3D-int LTR ERVK 2741 2819 -23 4 1156 293 0 27 0 chr4 74876870 74876907 -80753213 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 1156 418 210 0 48 chr4 74876907 74876928 -80753192 + RMER3D-int LTR ERVK 2820 2840 -2 4 1156 2126 152 66 8 chr4 74876930 74877322 -80752798 + RLTR31_Mm LTR ERVK 1 415 -146 4 1156 350 290 13 76 chr4 74877303 74877460 -80752660 + RLTR17 LTR ERVK 469 615 -77 4 1156 273 74 8 0 chr4 74877467 74877526 -80752594 + L1_Mus1 LINE L1 6513 6567 0 4 1156 253 24 73 0 chr4 74877530 74877571 -80752549 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 4 1156 24 32 0 0 chr4 74878247 74878278 -80751842 + AT_rich Low_complexity Low_complexity 1 31 0 4 1156 763 309 0 0 chr4 74879883 74880058 -80750062 - B3 SINE B2 -34 182 8 4 1156 2567 199 98 97 chr4 74880383 74881281 -80748839 + RLTR13D6 LTR ERVK 1 1033 0 4 1156 29 0 0 0 chr4 74881539 74881568 -80748552 + AT_rich Low_complexity Low_complexity 1 29 0 4 1156 5052 187 69 95 chr4 74881669 74882220 -80747900 - RMER12 LTR ERVK -1 1321 807 4 1156 450 79 0 0 chr4 74882220 74882283 -80747837 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1156 5052 187 69 95 chr4 74882283 74883085 -80747035 - RMER12 LTR ERVK -516 806 5 4 1156 3003 235 53 60 chr4 74883786 74884768 -80745352 + Lx3B LINE L1 4844 5822 -1151 4 1156 5540 62 59 45 chr4 74886281 74886778 -80743342 + L1Md_F LINE L1 410 954 -5662 4 1156 5089 9 0 0 chr4 74886778 74887347 -80742773 + L1Md_T LINE L1 6014 6582 0 4 1156 5540 81 54 42 chr4 74887347 74887702 -80742418 + L1Md_F LINE L1 953 1270 -5816 4 1156 29293 89 5 4 chr4 74887703 74888543 -80741577 + L1Md_F LINE L1 1216 2056 -3827 4 1156 3229 53 2 0 chr4 74888543 74888936 -80741184 - MTA_Mm LTR MaLR 0 396 3 4 1156 29293 89 5 4 chr4 74888936 74892293 -80737827 + L1Md_F LINE L1 2057 5416 -467 4 1156 1295 50 6 0 chr4 74892315 74892476 -80737644 - L1_Mm LINE L1 -299 5584 5423 4 1156 1955 114 262 34 chr4 74892476 74892922 -80737198 - RLTR6_Mm LTR ERV1 -70 584 37 4 1156 252 228 200 38 chr4 74892924 74893029 -80737091 - RLTR6_Mm LTR ERV1 -532 122 1 4 1156 30139 92 6 10 chr4 74893029 74898050 -80732070 - L1Md_A LINE L1 -457 5426 446 4 1156 365 286 20 10 chr4 74898842 74898941 -80731179 + PB1D10 SINE Alu 12 111 -6 4 1156 724 221 73 29 chr4 74898941 74899146 -80730974 + ORR1D1 LTR MaLR 98 311 -63 4 1156 389 338 71 5 chr4 74899176 74899292 -80730828 + MIRb SINE MIR 34 156 -112 4 1156 351 0 0 0 chr4 74899292 74899331 -80730789 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 1156 389 338 71 5 chr4 74899331 74899410 -80730710 + MIRb SINE MIR 157 241 -27 4 1156 282 29 0 0 chr4 74899508 74899543 -80730577 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1156 396 0 0 0 chr4 74900041 74900085 -80730035 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1156 978 129 0 7 chr4 74900129 74900277 -80729843 + B1_Mus1 SINE Alu 2 148 0 5 1156 201 74 0 0 chr4 74900278 74900305 -80729815 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1156 27 29 0 0 chr4 74901024 74901058 -80729062 + AT_rich Low_complexity Low_complexity 1 34 0 5 1156 309 336 99 0 chr4 74902031 74902162 -80727958 + B4A SINE B4 3 146 -146 5 1156 2580 118 85 35 chr4 74902165 74902622 -80727498 + Lx LINE L1 6174 6653 -1 5 1156 5713 137 48 25 chr4 74902713 74903757 -80726363 + Lx2B LINE L1 5933 7000 0 5 1156 405 0 0 0 chr4 74904300 74904345 -80725775 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1156 186 43 0 0 chr4 74904346 74904369 -80725751 + (CCA)n Simple_repeat Simple_repeat 3 25 0 5 1156 1209 54 0 0 chr4 74904644 74904791 -80725329 + B1_Mus1 SINE Alu 2 148 0 5 1156 22 0 0 0 chr4 74905744 74905766 -80724354 + AT_rich Low_complexity Low_complexity 1 22 0 5 1156 22 0 0 0 chr4 74907676 74907698 -80722422 + AT_rich Low_complexity Low_complexity 1 22 0 5 1156 183 42 0 0 chr4 74909402 74909426 -80720694 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1156 180 281 95 86 chr4 74909836 74909941 -80720179 - L2 LINE L2 -3301 118 13 5 1156 22 35 0 0 chr4 74910058 74910087 -80720033 + AT_rich Low_complexity Low_complexity 1 29 0 5 1156 293 342 41 72 chr4 74910221 74910511 -80719609 - Lx8 LINE L1 -5 7468 7188 5 1156 623 325 83 40 chr4 74910529 74910830 -80719290 - Lx8 LINE L1 -341 7132 6819 5 1156 25 31 0 0 chr4 74910840 74910872 -80719248 + AT_rich Low_complexity Low_complexity 1 32 0 5 1156 288 0 0 0 chr4 74910938 74910970 -80719150 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1156 413 297 57 63 chr4 74911029 74911187 -80718933 - MER57E1 LTR ERV1 -215 157 1 5 1156 402 21 0 0 chr4 74911627 74911674 -80718446 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1156 195 42 0 0 chr4 74912013 74912037 -80718083 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 5 1156 192 346 150 23 chr4 74912277 74912410 -80717710 - MER5A DNA MER1_type -39 150 1 5 1156 783 301 27 44 chr4 74912966 74913261 -80716859 - Lx8 LINE L1 -7 7466 7177 5 1156 214 111 35 47 chr4 74913497 74913582 -80716538 + (CAAA)n Simple_repeat Simple_repeat 2 85 0 5 1156 650 243 84 28 chr4 74913952 74914130 -80715990 + RMER20B LTR ERVK 128 315 -312 5 1156 337 236 69 94 chr4 74914137 74914296 -80715824 + RMER20B LTR ERVK 435 589 -38 5 1156 1143 119 0 0 chr4 74914310 74914486 -80715634 + (GAA)n Simple_repeat Simple_repeat 2 177 0 5 1156 578 327 139 108 chr4 74915246 74915309 -80714811 - MLT1E3 LTR MaLR 0 624 566 5 1156 866 274 10 0 chr4 74915309 74915506 -80714614 + B3 SINE B2 4 202 -14 5 1156 578 327 139 108 chr4 74915506 74916045 -80714075 - MLT1E3 LTR MaLR -59 565 3 5 1156 638 307 16 115 chr4 74916996 74917239 -80712881 + B4 SINE B4 35 253 -39 5 1156 314 267 113 49 chr4 74918007 74918149 -80711971 - B3A SINE B2 -2 196 46 5 1156 1526 265 114 5 chr4 74918362 74918861 -80711259 + Lx6 LINE L1 6512 7440 -20 5 1156 2982 256 169 61 chr4 74919014 74920308 -80709812 + Tigger1 DNA MER2_type 342 1775 -643 5 1156 297 0 0 0 chr4 74920308 74920341 -80709779 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1156 6868 68 39 0 chr4 74920346 74921267 -80708853 - L1_Mus3 LINE L1 -10 6628 5672 5 1156 879 285 88 55 chr4 74921267 74921664 -80708456 + Tigger1 DNA MER2_type 1837 2246 -172 5 1156 1633 214 43 20 chr4 74921681 74922029 -80708091 - MTD LTR MaLR -3 416 61 5 1156 272 296 72 42 chr4 74922173 74922339 -80707781 + Lx8 LINE L1 7288 7458 -15 5 1156 500 343 65 79 chr4 74924823 74925114 -80705006 + B4A SINE B4 2 288 -4 5 1156 289 191 15 45 chr4 74925317 74925383 -80704737 + RMER15 LTR ERVL 3 66 -509 5 1156 330 309 29 29 chr4 74925582 74925722 -80704398 + RMER15 LTR ERVL 422 561 -14 5 1156 381 43 0 0 chr4 74925960 74926007 -80704113 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1156 216 0 0 0 chr4 74926811 74926835 -80703285 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1156 1037 291 72 27 chr4 74926836 74927444 -80702676 + Lx9 LINE L1 6983 7644 0 5 1156 251 338 0 0 chr4 74928744 74928758 -80701362 - tRNA-Ala-GCG tRNA tRNA -3 72 2 5 1156 303 228 0 0 chr4 74928758 74928815 -80701305 - ID4 SINE ID -19 64 8 5 1156 3400 115 29 7 chr4 74929591 74930144 -80699976 - MusHAL1 LINE L1 -146 2566 2002 5 1156 588 189 0 0 chr4 74930141 74930231 -80699889 - L1VL4 LINE L1 -6025 277 188 5 1156 445 206 43 78 chr4 74930264 74930380 -80699740 - B1_Mus1 SINE Alu 0 148 37 5 1156 647 12 12 0 chr4 74930534 74930614 -80699506 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1156 263 246 0 50 chr4 74930886 74930946 -80699174 + ID4 SINE ID 8 64 -19 5 1156 243 317 0 0 chr4 74930897 74930957 -80699163 + tRNA-Ala-GCA tRNA tRNA 10 69 -6 5 1156 5463 85 11 13 chr4 74931329 74932492 -80697628 + L1VL1 LINE L1 231 1540 -4343 5 1156 559 115 46 0 chr4 74932475 74932562 -80697558 + L1_Mus2 LINE L1 6104 6194 -372 5 1156 1759 167 18 6 chr4 74932772 74933104 -80697016 - L1_Mur2 LINE L1 -1376 4501 4166 5 1156 4290 175 31 23 chr4 74933097 74933963 -80696157 + L1_Mur2 LINE L1 4514 5386 -491 5 1156 2346 207 39 42 chr4 74933963 74934532 -80695588 - MTA_Mm-int LTR MaLR -688 570 4 5 1156 339 93 18 18 chr4 74934532 74934585 -80695535 - MTA_Mm LTR MaLR -29 367 315 5 1156 1208 196 103 19 chr4 74934549 74934861 -80695259 + ORR1D1-int LTR MaLR 1005 1342 -28 5 1156 1550 229 19 35 chr4 74934871 74935246 -80694874 + ORR1D1 LTR MaLR 1 369 -5 5 1156 585 0 0 0 chr4 74936042 74936107 -80694013 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 5 1156 2454 172 132 41 chr4 74936140 74936678 -80693442 + RMER19C LTR ERVK 1 587 -24 5 1156 1703 262 54 27 chr4 74936754 74937236 -80692884 - RMER5 LTR ERV1 -15 519 25 5 1156 288 0 0 0 chr4 74937407 74937439 -80692681 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1156 323 276 143 0 chr4 74938685 74938790 -80691330 - MIRc SINE MIR -57 211 92 5 1156 236 308 38 25 chr4 74939525 74939605 -80690515 - ID2 SINE ID -1 82 2 5 1156 438 233 45 104 chr4 74940262 74940396 -80689724 + RSINE1 SINE B4 12 137 -28 5 1156 476 213 0 21 chr4 74942067 74942163 -80687957 - MTC LTR MaLR -7 414 321 5 1156 1433 143 0 0 chr4 74942189 74942412 -80687708 - Lx2 LINE L1 0 6997 6775 5 1156 1838 140 39 0 chr4 74942412 74942698 -80687422 - Lx2 LINE L1 -354 6643 6347 5 1156 886 164 6 12 chr4 74942696 74942857 -80687263 + Lx2 LINE L1 6186 6345 -652 5 1156 1591 253 6 11 chr4 74942857 74943209 -80686911 - MTC LTR MaLR -71 350 1 5 1156 334 326 124 22 chr4 74943722 74943989 -80686131 + L1MEc LINE L1 39 332 -6068 5 1156 259 283 100 36 chr4 74944151 74944400 -80685720 + L1MEc LINE L1 3570 3834 -2485 5 1156 262 253 112 12 chr4 74944561 74944641 -80685479 + B3 SINE B2 128 215 -1 5 1156 308 298 119 16 chr4 74944651 74944777 -80685343 + L1M2 LINE L1 4065 4203 -1940 5 1156 315 133 183 32 chr4 74944951 74945044 -80685076 + L1MD LINE L1 3095 3201 -2945 5 1156 440 48 0 16 chr4 74945314 74945378 -80684742 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 1156 1117 66 0 0 chr4 74945378 74945514 -80684606 - B1_Mm SINE Alu -8 139 4 5 1156 657 181 7 0 chr4 74945937 74946075 -80684045 + L1_Mm LINE L1 4987 5125 -758 5 1156 207 0 0 0 chr4 74946226 74946249 -80683871 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1156 2634 142 79 18 chr4 74946460 74946567 -80683553 + L1_Mus3 LINE L1 6112 6217 -421 5 1156 2661 115 28 0 chr4 74946567 74946959 -80683161 + RLTR9D LTR ERVK 1 403 0 5 1156 2634 142 79 18 chr4 74946959 74947346 -80682774 + L1_Mus3 LINE L1 6218 6636 -2 5 1156 378 171 0 0 chr4 74947346 74947416 -80682704 + GA-rich Low_complexity Low_complexity 1 70 0 5 1156 666 336 66 12 chr4 74947431 74947750 -80682370 + RMER15-int LTR ERVL 1994 2329 -2670 5 1156 1220 277 97 60 chr4 74947991 74948529 -80681591 + RMER15-int LTR ERVL 3773 4330 -669 5 1156 718 284 18 54 chr4 74948537 74948813 -80681307 + RMER15-int LTR ERVL 4706 4971 -28 5 1156 3102 8 43 0 chr4 74949113 74949465 -80680655 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1156 51758 23 31 2 chr4 74949465 74955757 -80674363 - IAPEz-int LTR ERVK 0 6481 8 5 1156 3102 8 43 0 chr4 74955757 74956109 -80674011 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1156 770 260 28 28 chr4 74956241 74956455 -80673665 + ORR1D1 LTR MaLR 43 256 -118 5 1156 525 316 29 12 chr4 74956546 74956716 -80673404 + RMER15 LTR ERVL 363 535 -40 5 1156 207 0 0 0 chr4 74957488 74957511 -80672609 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1156 660 263 31 127 chr4 74957810 74958132 -80671988 - RLTR26 LTR ERVK 0 642 352 5 1156 2398 118 55 5 chr4 74958132 74958533 -80671587 - BGLII LTR ERVK 0 421 1 5 1156 2912 217 32 43 chr4 74958533 74959461 -80670659 - RMER3D-int LTR ERVK 0 2842 1925 5 1156 561 197 31 56 chr4 74959462 74959623 -80670497 - RMER3D-int LTR ERVK -1148 1694 1538 5 1156 1668 187 88 14 chr4 74959653 74960150 -80669970 - RMER3D-int LTR ERVK -1309 1533 1014 5 1156 1460 29 40 5 chr4 74960176 74960559 -80669561 + (TTTCC)n Simple_repeat Simple_repeat 1 396 0 5 1156 1119 224 23 32 chr4 74960571 74960714 -80669406 - BGLII LTR ERVK -30 392 223 5 1156 654 13 0 0 chr4 74960714 74960789 -80669331 + (TCC)n Simple_repeat Simple_repeat 2 76 0 5 1156 1119 189 35 4 chr4 74960789 74961003 -80669117 - BGLII LTR ERVK -199 222 1 5 1156 877 277 120 15 chr4 74961003 74961326 -80668794 - RLTR26 LTR ERVK -285 357 1 5 1156 1123 311 118 6 chr4 74961779 74962296 -80667824 + Lx9 LINE L1 6458 7032 -612 5 1156 504 313 78 38 chr4 74962840 74963244 -80666876 + Lx9 LINE L1 7059 7465 -179 5 1156 441 36 0 0 chr4 74963244 74963299 -80666821 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1156 504 313 78 38 chr4 74963299 74963442 -80666678 + Lx9 LINE L1 7466 7628 -16 5 1156 1040 113 132 5 chr4 74963597 74963802 -80666318 - MusHAL1 LINE L1 -920 1792 1562 5 1156 5308 181 36 33 chr4 74963810 74963921 -80666199 + Lx2B LINE L1 5799 5923 -1077 5 1156 3353 40 0 2 chr4 74963921 74964318 -80665802 - MTA_Mm LTR MaLR 0 396 1 5 1156 5308 181 36 33 chr4 74964318 74965402 -80664718 + Lx2B LINE L1 5924 6998 -2 5 1156 285 301 48 75 chr4 74965529 74965676 -80664444 + MIRb SINE MIR 60 202 -66 5 1156 348 339 16 24 chr4 74967012 74967139 -80662981 - B1F SINE Alu -14 135 10 5 1156 25 0 0 0 chr4 74967401 74967426 -80662694 + AT_rich Low_complexity Low_complexity 1 25 0 5 1156 180 289 0 0 chr4 74967528 74967573 -80662547 + MER5A DNA MER1_type 34 78 -111 5 1156 2923 192 24 79 chr4 74967586 74968246 -80661874 - RMER20B LTR ERVK 0 627 4 5 1156 230 373 58 25 chr4 74968687 74968808 -80661312 + MLT1K LTR MaLR 378 502 -93 5 1156 366 42 0 0 chr4 74968814 74968862 -80661258 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1156 5655 163 33 16 chr4 74969056 74970045 -80660075 + Lx4A LINE L1 6052 7057 -1 5 1156 32 43 0 0 chr4 74970072 74970118 -80660002 + AT_rich Low_complexity Low_complexity 1 46 0 5 1156 450 0 0 0 chr4 74971729 74971779 -80658341 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1156 947 73 13 26 chr4 74972311 74972465 -80657655 + L1Md_F2 LINE L1 6429 6580 -2 5 1156 359 335 35 5 chr4 74972526 74972727 -80657393 - Ricksha_0 DNA MuDR -468 1265 1059 6 1156 580 207 75 26 chr4 74972748 74972976 -80657144 - Ricksha_0 DNA MuDR -714 1019 781 6 1157 1405 218 80 25 chr4 74973493 74973855 -80656265 - ORR1C2 LTR MaLR 0 384 3 6 1157 513 295 60 44 chr4 74974022 74974274 -80655846 - Ricksha_0 DNA MuDR -1135 598 343 6 1157 410 332 77 21 chr4 74975993 74976227 -80653893 + MIR SINE MIR 16 262 0 6 1157 957 79 0 0 chr4 74976554 74976681 -80653439 - B1_Mus2 SINE Alu -20 127 1 6 1157 1599 183 14 3 chr4 74978152 74978443 -80651677 - ORR1B1 LTR MaLR 0 394 101 6 1157 1055 155 155 52 chr4 74978444 74978695 -80651425 - RMER4B LTR ERVK 0 585 309 6 1157 1747 236 46 44 chr4 74978695 74979219 -80650901 - RLTR20A2 LTR ERVK 0 578 54 6 1157 376 102 30 45 chr4 74979220 74979353 -80650767 + T-rich Low_complexity Low_complexity 1 131 0 6 1157 1665 137 85 0 chr4 74979397 74979690 -80650430 - RMER4B LTR ERVK -267 318 1 6 1157 499 217 36 58 chr4 74979690 74979747 -80650373 - ORR1B1 LTR MaLR -285 109 56 6 1157 607 112 19 0 chr4 74979747 74979854 -80650266 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 1157 499 228 44 39 chr4 74979854 74979934 -80650186 - ORR1B1 LTR MaLR -339 55 1 6 1157 1597 21 0 50 chr4 74979942 74980142 -80649978 - B2_Mm1a SINE B2 -2 191 2 6 1157 215 387 149 25 chr4 74980805 74981086 -80649034 - L2c LINE L2 0 3387 3072 6 1157 30 0 0 0 chr4 74981859 74981889 -80648231 + AT_rich Low_complexity Low_complexity 1 30 0 6 1157 221 57 0 28 chr4 74981889 74981925 -80648195 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1157 363 255 27 89 chr4 74981925 74982037 -80648083 - B3A SINE B2 -60 138 34 6 1157 211 339 71 9 chr4 74982577 74982690 -80647430 + B1_Mus1 SINE Alu 1 120 -28 6 1157 375 183 0 0 chr4 74983174 74983256 -80646864 + CT-rich Low_complexity Low_complexity 2 83 0 6 1157 277 304 0 0 chr4 74983725 74983794 -80646326 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 6 1157 578 110 18 0 chr4 74984864 74984973 -80645147 + (CAAAA)n Simple_repeat Simple_repeat 2 112 0 6 1157 5986 82 22 4 chr4 74985414 74986223 -80643897 + Lx3_Mus LINE L1 6178 7001 -8 6 1157 399 323 8 8 chr4 74986356 74986487 -80643633 - Lx9 LINE L1 -1132 6512 6382 6 1157 236 263 25 0 chr4 74986555 74986673 -80643447 + (TA)n Simple_repeat Simple_repeat 2 122 0 6 1157 1924 243 100 19 chr4 74986847 74987363 -80642757 + Lx9 LINE L1 6953 7471 -173 6 1157 385 34 17 33 chr4 74987363 74987423 -80642697 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 1157 1924 243 100 19 chr4 74987423 74987535 -80642585 + Lx9 LINE L1 7472 7632 -12 6 1157 257 119 0 0 chr4 74987532 74987574 -80642546 - Lx2 LINE L1 -361 6636 6595 6 1157 28 29 0 0 chr4 74987582 74987617 -80642503 + AT_rich Low_complexity Low_complexity 1 35 0 6 1157 5510 121 2 28 chr4 74988381 74989233 -80640887 + Lx3A LINE L1 6145 6974 -7 6 1157 26 50 0 0 chr4 74989233 74989273 -80640847 + AT_rich Low_complexity Low_complexity 1 40 0 6 1157 611 210 247 6 chr4 74989660 74989842 -80640278 - URR1A DNA MER1_type 0 226 1 6 1157 1828 219 40 3 chr4 74990338 74990718 -80639402 - ORR1B1 LTR MaLR 0 394 1 6 1157 3706 61 8 0 chr4 74990779 74991252 -80638868 - L1_Mus1 LINE L1 -1 6566 6090 6 1157 3717 55 11 0 chr4 74991252 74991907 -80638213 + L1_Mus1 LINE L1 5418 6079 -488 6 1157 5557 79 4 0 chr4 74992477 74993259 -80636861 - L1Md_F2 LINE L1 -305 5578 4794 6 1157 7303 72 13 5 chr4 74993259 74994236 -80635884 + L1Md_F2 LINE L1 5597 6581 -1 6 1157 38892 8 0 0 chr4 74994658 75000000 -80630120 - L1Md_A LINE L1 -2 6580 1239 6 1157 9528 40 12 30 chr4 75000000 75001633 -80628487 - L1Md_A LINE L1 -5486 1238 1 1 1157 737 171 11 11 chr4 75001923 75002100 -80628020 + GA-rich Low_complexity Low_complexity 3 179 0 2 1157 8081 52 1 2 chr4 75002642 75003859 -80626261 - L1Md_F2 LINE L1 -3 6579 5364 3 1157 255 353 8 78 chr4 75003982 75004111 -80626009 + B4A SINE B4 165 284 -8 4 1157 534 197 0 0 chr4 75004137 75004254 -80625866 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 5 1157 253 398 0 0 chr4 75005586 75005679 -80624441 + MER5A DNA MER1_type 71 163 -26 6 1157 549 299 128 42 chr4 75006823 75007207 -80622913 - Lx9 LINE L1 -1108 6536 6120 7 1157 1755 291 51 23 chr4 75007289 75008049 -80622071 + Lx9 LINE L1 5080 5902 -680 8 1157 300 283 138 20 chr4 75008912 75009166 -80620954 + L1M1 LINE L1 5311 5594 -706 9 1157 1686 340 61 16 chr4 75009161 75009868 -80620252 + Lx9 LINE L1 6437 7175 -469 8 1157 16315 221 36 14 chr4 75009932 75012147 -80617973 - Lx6 LINE L1 -732 6728 4209 1 1157 333 0 0 0 chr4 75012147 75012184 -80617936 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1157 16315 206 25 16 chr4 75012184 75012808 -80617312 - Lx6 LINE L1 -1669 4208 3578 1 1157 1740 156 26 67 chr4 75012808 75013151 -80616969 + ORR1A4 LTR MaLR 1 329 0 1 1157 16315 206 25 16 chr4 75013151 75014648 -80615472 - Lx6 LINE L1 -2300 3577 2058 1 1157 312 27 0 0 chr4 75014654 75014691 -80615429 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1157 200 127 78 16 chr4 75014763 75014827 -80615293 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 1 1157 237 83 0 0 chr4 75014828 75014864 -80615256 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1 1157 2461 292 90 45 chr4 75014959 75016038 -80614082 - Lx8 LINE L1 -85 7388 6262 1 1157 374 325 67 51 chr4 75016153 75016331 -80613789 - B3 SINE B2 -30 186 6 1 1157 255 103 0 0 chr4 75016338 75016377 -80613743 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1157 234 156 0 0 chr4 75016382 75016427 -80613693 - Lx8 LINE L1 0 7473 7429 1 1157 230 106 0 21 chr4 75016513 75016561 -80613559 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1157 532 275 36 0 chr4 75017460 75017598 -80612522 + MTD LTR MaLR 1 143 -276 2 1157 313 286 9 9 chr4 75017626 75017739 -80612381 + L1_Mur3 LINE L1 2104 2216 -3661 2 1157 380 280 161 10 chr4 75017845 75018057 -80612063 + L1_Mur3 LINE L1 2269 2504 -3376 2 1157 446 119 12 0 chr4 75018057 75018141 -80611979 + (TAG)n Simple_repeat Simple_repeat 1 85 0 2 1157 380 280 161 10 chr4 75018141 75018238 -80611882 + L1_Mur3 LINE L1 2505 2624 -3256 2 1157 749 195 105 152 chr4 75018245 75018560 -80611560 + RLTR31_Mm LTR ERVK 1 300 -261 2 1157 28372 98 4 9 chr4 75018560 75023232 -80606888 - L1Md_F2 LINE L1 -31 6551 1831 2 1157 5589 164 33 2 chr4 75023220 75024329 -80605791 - L1Md_F2 LINE L1 -5396 1328 173 2 1157 960 224 49 45 chr4 75024333 75024619 -80605501 + RLTR31A_Mm LTR ERVK 228 514 -70 2 1157 347 259 23 74 chr4 75024632 75024807 -80605313 + L1_Mur3 LINE L1 2620 2785 -3095 2 1157 1073 167 10 20 chr4 75024808 75025004 -80605116 - RLTR16 LTR ERVK -2 503 310 2 1157 876 174 112 6 chr4 75025003 75025182 -80604938 - RLTR16 LTR ERVK -307 198 1 2 1157 334 226 149 50 chr4 75025325 75025605 -80604515 + L1_Mur3 LINE L1 2893 3198 -2679 2 1157 277 269 20 0 chr4 75025629 75025739 -80604381 + L1_Mur3 LINE L1 3303 3418 -2429 2 1157 341 291 53 95 chr4 75025760 75026022 -80604098 - Lx8 LINE L1 -2 7471 7221 2 1157 367 273 53 72 chr4 75026025 75026331 -80603789 + L1_Mur3 LINE L1 3444 3744 -2399 2 1157 315 0 0 0 chr4 75026422 75026457 -80603663 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1157 518 89 189 0 chr4 75026458 75026548 -80603572 - B1_Mus1 SINE Alu -14 134 28 3 1157 920 283 141 36 chr4 75027837 75028405 -80601715 + L1_Mur3 LINE L1 3748 4396 -1747 2 1157 324 0 0 0 chr4 75028405 75028441 -80601679 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1157 607 283 141 36 chr4 75028441 75028503 -80601617 + L1_Mur3 LINE L1 4397 4474 -1669 2 1157 255 274 0 204 chr4 75029227 75029369 -80600751 - MLT1M LTR MaLR -5 667 555 3 1157 180 0 0 0 chr4 75029751 75029771 -80600349 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1157 1090 202 132 40 chr4 75030078 75030382 -80599738 - IAPEY3_LTR LTR ERVK 0 332 1 3 1157 5763 114 23 35 chr4 75030549 75031504 -80598616 - Lx3A LINE L1 0 6981 6038 3 1157 489 17 0 0 chr4 75032887 75032945 -80597175 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1157 292 145 0 83 chr4 75033577 75033637 -80596483 + L4 LINE RTE 1783 1837 -192 3 1157 918 241 27 0 chr4 75033878 75034098 -80596022 + Lx9 LINE L1 5597 5822 -25 3 1157 1247 295 59 62 chr4 75034143 75034768 -80595352 + Lx9 LINE L1 6156 6778 -866 3 1157 719 254 68 40 chr4 75034768 75035084 -80595036 - RLTR26 LTR ERVK 0 642 428 4 1157 249 260 81 14 chr4 75035327 75035401 -80594719 + ORR1E LTR MaLR 269 347 -12 4 1157 2706 298 63 43 chr4 75035575 75035875 -80594245 + Lx9 LINE L1 6400 6707 -937 4 1157 1419 212 191 8 chr4 75035875 75036231 -80593889 - MTC LTR MaLR 0 421 1 4 1157 2706 298 63 43 chr4 75036231 75036609 -80593511 + Lx9 LINE L1 6708 7069 -575 4 1157 3544 186 37 21 chr4 75036609 75036954 -80593166 + RMER6D LTR ERVK 1 366 -354 4 1157 408 20 0 0 chr4 75036954 75037003 -80593117 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1157 3544 186 37 21 chr4 75037003 75037362 -80592758 + RMER6D LTR ERVK 367 716 -4 4 1157 2706 298 63 43 chr4 75037362 75037855 -80592265 + Lx9 LINE L1 7070 7596 -48 4 1157 733 285 52 19 chr4 75037857 75038068 -80592052 + ID_B1 SINE B4 7 224 0 4 1157 394 360 0 9 chr4 75038089 75038201 -80591919 + RSINE1 SINE B4 14 124 -41 4 1157 513 0 0 0 chr4 75038201 75038258 -80591862 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1157 315 0 0 0 chr4 75038258 75038292 -80591828 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1157 1222 206 147 41 chr4 75038637 75038803 -80591317 + ORR1C2 LTR MaLR 9 166 -218 5 1157 822 48 0 0 chr4 75038803 75038906 -80591214 + (TC)n Simple_repeat Simple_repeat 2 104 0 5 1157 1222 206 147 41 chr4 75038906 75039079 -80591041 + ORR1C2 LTR MaLR 167 383 -1 5 1157 429 293 11 87 chr4 75041585 75041768 -80588352 - MER20 DNA MER1_type -12 207 39 5 1157 256 341 38 38 chr4 75042124 75042255 -80587865 + L2 LINE L2 2668 2798 -621 5 1157 1454 243 78 17 chr4 75042420 75042897 -80587223 - Lx7 LINE L1 0 7696 7191 5 1157 519 17 0 0 chr4 75043083 75043143 -80586977 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1157 401 50 17 0 chr4 75043280 75043340 -80586780 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 1157 524 331 14 0 chr4 75043830 75043969 -80586151 - RSINE1 SINE B4 -19 146 6 5 1157 197 222 16 0 chr4 75044163 75044226 -80585894 + (TGAA)n Simple_repeat Simple_repeat 4 67 0 5 1157 304 204 19 0 chr4 75045823 75045877 -80584243 + B4A SINE B4 5 59 -233 5 1157 599 78 11 0 chr4 75045878 75045968 -80584152 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1157 973 222 130 16 chr4 75045969 75046276 -80583844 + Lx9 LINE L1 7230 7571 -73 6 1157 228 309 86 60 chr4 75046332 75046449 -80583671 + B4A SINE B4 129 248 -44 6 1157 276 102 0 0 chr4 75046449 75046498 -80583622 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1157 430 267 119 35 chr4 75046542 75046735 -80583385 + Lx9 LINE L1 5879 6090 -1554 6 1157 2225 155 79 11 chr4 75046735 75047114 -80583006 + RLTR44A LTR ERVK 1 405 0 6 1157 349 125 0 0 chr4 75047122 75047170 -80582950 + RLTR44-int LTR ERVK 9 56 -2756 6 1157 373 102 0 17 chr4 75047180 75047240 -80582880 + RLTR44-int LTR ERVK 816 874 -1938 6 1157 686 95 0 19 chr4 75047278 75047385 -80582735 + RLTR44-int LTR ERVK 877 981 -1831 6 1157 3837 68 24 14 chr4 75047571 75048077 -80582043 + RLTR44-int LTR ERVK 979 1489 -1323 6 1157 4908 58 0 2 chr4 75048383 75048985 -80581135 + RLTR44-int LTR ERVK 2210 2810 -2 6 1157 2053 153 83 29 chr4 75048987 75049371 -80580749 + RLTR44A LTR ERVK 1 405 0 6 1157 2045 104 13 3 chr4 75049779 75050087 -80580033 - L1_Mus2 LINE L1 0 6566 6256 6 1157 351 218 0 39 chr4 75050368 75050497 -80579623 + (CATA)n Simple_repeat Simple_repeat 4 127 0 6 1157 23 0 0 0 chr4 75050975 75050998 -80579122 + AT_rich Low_complexity Low_complexity 1 23 0 6 1157 25 65 0 0 chr4 75051071 75051117 -80579003 + AT_rich Low_complexity Low_complexity 1 46 0 7 1157 712 70 6 37 chr4 75051293 75051405 -80578715 - L1_Mus3 LINE L1 -231 5952 5804 7 1157 349 298 0 16 chr4 75051414 75051540 -80578580 - Lx9 LINE L1 -291 7353 7230 7 1157 7151 117 12 1 chr4 75051545 75053066 -80577054 - L1_Mus3 LINE L1 -2 6636 5099 7 1157 2686 98 0 3 chr4 75053070 75053448 -80576672 - L1_Mus2 LINE L1 0 6566 6190 7 1157 697 130 0 9 chr4 75053448 75053555 -80576565 - MusHAL1 LINE L1 -1041 1671 1565 7 1157 494 297 15 45 chr4 75053562 75053763 -80576357 - Lx9 LINE L1 -451 7193 6999 7 1157 4632 278 129 34 chr4 75053762 75056734 -80573386 - L1_Rod LINE L1 -48 5799 2544 7 1157 299 335 76 20 chr4 75056879 75057030 -80573090 + MIRb SINE MIR 17 170 -98 7 1157 27 0 0 0 chr4 75057117 75057144 -80572976 + AT_rich Low_complexity Low_complexity 1 27 0 7 1157 295 221 0 14 chr4 75057458 75057527 -80572593 - Lx9 LINE L1 -171 7473 7406 7 1157 26 0 0 0 chr4 75057721 75057747 -80572373 + AT_rich Low_complexity Low_complexity 1 26 0 8 1157 525 32 0 0 chr4 75058075 75058138 -80571982 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 1157 207 0 0 0 chr4 75058138 75058160 -80571960 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1157 519 17 0 0 chr4 75058968 75059028 -80571092 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1157 22 35 0 0 chr4 75061571 75061600 -80568520 + AT_rich Low_complexity Low_complexity 1 29 0 8 1157 271 305 50 31 chr4 75061663 75061822 -80568298 + L1ME1 LINE L1 5767 5928 -251 8 1157 4085 239 107 48 chr4 75062020 75062931 -80567189 - Lx6 LINE L1 0 7460 6521 8 1157 1803 186 94 3 chr4 75062931 75063292 -80566828 - ORR1B1 LTR MaLR 0 394 1 8 1157 4085 239 107 48 chr4 75063292 75063644 -80566476 - Lx6 LINE L1 -940 6520 6123 8 1157 1517 158 118 29 chr4 75063644 75063984 -80566136 - L1_Mur3 LINE L1 -1529 4351 3982 8 1157 555 16 0 0 chr4 75064021 75064085 -80566035 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1157 219 36 0 0 chr4 75064541 75064569 -80565551 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1157 1658 190 25 0 chr4 75064620 75064941 -80565179 + ORR1A4 LTR MaLR 1 329 0 9 1157 210 37 0 0 chr4 75065073 75065100 -80565020 + (CAA)n Simple_repeat Simple_repeat 2 28 0 9 1157 1883 147 21 24 chr4 75065255 75065583 -80564537 + ORR1A2 LTR MaLR 1 327 0 9 1157 22 0 0 0 chr4 75067052 75067074 -80563046 + AT_rich Low_complexity Low_complexity 1 22 0 9 1157 4842 73 0 2 chr4 75067076 75067706 -80562414 + L1_Mus1 LINE L1 5936 6564 -3 9 1157 21 57 0 0 chr4 75067745 75067780 -80562340 + AT_rich Low_complexity Low_complexity 1 35 0 9 1157 334 368 9 0 chr4 75068534 75068640 -80561480 - ORR1E LTR MaLR -250 109 3 9 1157 333 0 0 0 chr4 75068837 75068874 -80561246 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1157 741 258 48 5 chr4 75069197 75069384 -80560736 + MTD LTR MaLR 225 419 0 9 1157 473 174 0 10 chr4 75070007 75070106 -80560014 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1157 261 83 0 0 chr4 75070143 75070179 -80559941 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1157 999 136 0 0 chr4 75070523 75070670 -80559450 + B1_Mus1 SINE Alu 2 148 0 1 1157 249 33 0 0 chr4 75070670 75070700 -80559420 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1157 476 350 79 2 chr4 75071043 75071256 -80558864 - MLT1A0 LTR MaLR -2 406 167 1 1157 351 0 0 0 chr4 75071407 75071446 -80558674 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1157 23 0 0 0 chr4 75072449 75072472 -80557648 + AT_rich Low_complexity Low_complexity 1 23 0 1 1157 270 132 0 0 chr4 75072603 75072656 -80557464 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1157 325 318 26 31 chr4 75073791 75073954 -80556166 + MIRc SINE MIR 2 162 -100 1 1157 305 167 56 0 chr4 75075381 75075435 -80554685 + MLT1J LTR MaLR 246 302 -210 1 1157 704 298 128 46 chr4 75075923 75076291 -80553829 + MTB_Mm LTR MaLR 1 603 -7 1 1157 526 283 98 40 chr4 75076337 75076510 -80553610 - MTD LTR MaLR -22 397 215 1 1157 445 297 0 0 chr4 75077118 75077236 -80552884 + Lx8 LINE L1 6816 6933 -540 1 1157 235 258 84 63 chr4 75077238 75077333 -80552787 + RMER12B LTR ERVK 504 600 -804 1 1157 29 28 0 0 chr4 75077390 75077426 -80552694 + AT_rich Low_complexity Low_complexity 1 36 0 1 1157 503 209 177 95 chr4 75077427 75077670 -80552450 + RLTR22_Mur LTR ERVK 514 776 -1072 1 1157 951 32 0 0 chr4 75077676 75077800 -80552320 + L1Md_T LINE L1 6457 6580 -2 1 1157 4640 235 52 20 chr4 75078013 75079250 -80550870 - Lx2B LINE L1 -11 6989 5713 1 1157 980 336 43 18 chr4 75079282 75079673 -80550447 + Lx8 LINE L1 6868 7268 -205 1 1157 6194 28 0 0 chr4 75079674 75080399 -80549721 + L1Md_A LINE L1 5858 6582 0 1 1157 4543 133 23 7 chr4 75082759 75083494 -80546626 - Lx LINE L1 -1 6653 5907 1 1157 6654 174 30 36 chr4 75083494 75084897 -80545223 + Lx4B LINE L1 4526 5927 -1131 1 1157 856 158 5 108 chr4 75085211 75085396 -80544724 + ORR1C2 LTR MaLR 1 166 -218 1 1157 498 46 0 0 chr4 75085396 75085461 -80544659 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1157 297 0 0 0 chr4 75085465 75085498 -80544622 + (ATG)n Simple_repeat Simple_repeat 1 33 0 1 1157 576 191 19 0 chr4 75085498 75085603 -80544517 + ORR1C2 LTR MaLR 278 384 0 1 1157 214 306 55 109 chr4 75085649 75085759 -80544361 - MIRb SINE MIR -60 208 105 1 1157 243 302 35 131 chr4 75085802 75085947 -80544173 - MTE2a LTR MaLR -52 327 197 1 1157 1708 187 11 144 chr4 75086094 75086464 -80543656 - ORR1B1 LTR MaLR 0 394 55 1 1157 327 130 0 0 chr4 75086464 75086518 -80543602 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1157 8120 200 24 66 chr4 75086518 75088655 -80541465 - ORR1B1-int LTR MaLR 0 1792 1 1 1157 1524 208 33 79 chr4 75088660 75089026 -80541094 - ORR1B1 LTR MaLR -5 389 41 1 1157 369 109 0 0 chr4 75089223 75089278 -80540842 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 1 1157 866 295 20 103 chr4 75090050 75090086 -80540034 + MTEb LTR MaLR 25 58 -321 1 1157 1650 209 29 93 chr4 75090086 75090507 -80539613 + ORR1B1 LTR MaLR 1 394 0 1 1157 866 295 20 103 chr4 75090507 75090772 -80539348 + MTEb LTR MaLR 59 301 -78 1 1157 375 300 73 32 chr4 75090775 75090899 -80539221 - MLT2B3 LTR ERVL -418 136 8 1 1157 52 58 0 0 chr4 75090922 75091009 -80539111 + AT_rich Low_complexity Low_complexity 1 87 0 1 1157 24 32 0 0 chr4 75091272 75091303 -80538817 + AT_rich Low_complexity Low_complexity 1 31 0 1 1157 2684 305 70 57 chr4 75091401 75091975 -80538145 - Lx5 LINE L1 -19 7031 6450 1 1157 339 25 0 0 chr4 75091975 75092015 -80538105 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1157 2684 305 70 57 chr4 75092015 75092733 -80537387 - Lx5 LINE L1 -601 6449 5722 1 1157 404 118 15 0 chr4 75092837 75092905 -80537215 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1157 633 249 45 11 chr4 75092960 75093139 -80536981 + ORR1C2 LTR MaLR 200 384 0 1 1157 5682 83 18 1 chr4 75093190 75093978 -80536142 - L1_Mus3 LINE L1 0 6638 5838 1 1157 1030 265 108 0 chr4 75094037 75094399 -80535721 - Lx9 LINE L1 -2 7642 7242 1 1157 257 330 10 50 chr4 75094592 75094691 -80535429 - PB1D10 SINE Alu 0 117 23 1 1157 357 24 0 0 chr4 75094732 75094774 -80535346 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1157 387 0 0 0 chr4 75094774 75094816 -80535304 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1157 183 80 0 0 chr4 75095696 75095721 -80534399 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1157 240 35 0 0 chr4 75095864 75095893 -80534227 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1157 22 0 0 0 chr4 75096425 75096447 -80533673 + AT_rich Low_complexity Low_complexity 1 22 0 1 1157 703 247 118 41 chr4 75096576 75096846 -80533274 + RMER20B LTR ERVK 113 403 -224 1 1157 227 30 0 0 chr4 75096955 75096988 -80533132 + B1_Mur4 SINE Alu 116 148 -2 1 1157 342 0 0 0 chr4 75097022 75097060 -80533060 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1157 378 200 0 13 chr4 75097064 75097140 -80532980 + B3 SINE B2 1 75 -141 1 1157 310 168 18 33 chr4 75099175 75099253 -80530867 - B1_Mus2 SINE Alu -37 112 41 1 1157 704 181 24 0 chr4 75099462 75099589 -80530531 - B3 SINE B2 -86 130 1 1 1157 387 0 0 0 chr4 75100160 75100203 -80529917 + (CCA)n Simple_repeat Simple_repeat 1 43 0 1 1157 312 48 0 0 chr4 75100218 75100260 -80529860 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1157 1000 182 98 5 chr4 75100685 75100889 -80529231 - URR1A DNA MER1_type 0 226 4 1 1157 1890 187 64 34 chr4 75101251 75101722 -80528398 - RMER6C LTR ERVK 0 690 206 1 1157 2588 179 67 28 chr4 75101733 75102240 -80527880 + RMER16 LTR ERVK 1 527 -6 1 1157 440 184 113 121 chr4 75102251 75102375 -80527745 - RMER6C LTR ERVK -567 123 1 1 1157 229 193 48 39 chr4 75102522 75102584 -80527536 - LTRIS2 LTR ERV1 -66 498 455 1 1157 180 0 0 0 chr4 75102584 75102604 -80527516 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 1 1157 226 323 112 79 chr4 75102604 75102756 -80527364 - LTRIS2 LTR ERV1 -107 339 181 1 1157 222 37 0 0 chr4 75103349 75103376 -80526744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1157 22 0 0 0 chr4 75103974 75103996 -80526124 + AT_rich Low_complexity Low_complexity 1 22 0 1 1157 333 0 0 0 chr4 75104144 75104181 -80525939 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1158 507 324 73 73 chr4 75104420 75105433 -80524687 + L1_Rod LINE L1 1730 2742 -3105 1 1158 431 318 44 52 chr4 75105597 75105733 -80524387 + RSINE1 SINE B4 2 136 -29 1 1158 428 276 86 81 chr4 75106182 75106391 -80523729 + RMER2 LTR ERV1 330 539 -28 1 1158 682 314 88 75 chr4 75106563 75107386 -80522734 - L1_Rod LINE L1 -303 5544 4712 1 1158 563 159 43 86 chr4 75107696 75107813 -80522307 + RMER6B LTR ERVK 1 112 -349 1 1158 1322 187 238 44 chr4 75107813 75108199 -80521921 + RMER6B LTR ERVK 1 461 0 1 1158 876 360 28 49 chr4 75108952 75109486 -80520634 + Lx8 LINE L1 6579 7101 -372 1 1158 288 0 0 0 chr4 75109622 75109654 -80520466 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1158 768 292 35 26 chr4 75109807 75110225 -80519895 + Lx7 LINE L1 5532 5988 -1656 1 1158 230 317 122 0 chr4 75110750 75110873 -80519247 + MIR SINE MIR 64 201 -61 1 1158 213 121 0 0 chr4 75110981 75111014 -80519106 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1158 1833 270 70 30 chr4 75111641 75112240 -80517880 + Lx7 LINE L1 6857 7479 -217 1 1158 261 239 14 29 chr4 75114040 75114109 -80516011 + GA-rich Low_complexity Low_complexity 1 68 0 1 1158 23 0 0 0 chr4 75114671 75114694 -80515426 + AT_rich Low_complexity Low_complexity 1 23 0 1 1158 742 242 0 13 chr4 75114991 75115142 -80514978 + MTEb LTR MaLR 229 377 -2 1 1158 1774 208 16 55 chr4 75115778 75116160 -80513960 - ORR1B2 LTR MaLR 0 367 1 1 1158 244 113 31 46 chr4 75117173 75117238 -80512882 + T-rich Low_complexity Low_complexity 6 69 0 1 1158 249 108 0 0 chr4 75118042 75118079 -80512041 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1158 303 273 48 57 chr4 75118508 75118613 -80511507 - PB1 SINE Alu -2 125 22 1 1158 201 94 0 0 chr4 75118972 75119004 -80511116 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 1 1158 197 139 23 0 chr4 75119418 75119461 -80510659 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1158 548 294 7 14 chr4 75119774 75119922 -80510198 - B1F SINE Alu 0 149 3 1 1158 32401 73 3 5 chr4 75119962 75123100 -80507020 - L1Md_F2 LINE L1 -16 6566 3437 1 1158 5276 59 12 0 chr4 75123100 75123774 -80506346 - L1Md_F2 LINE L1 -2 6580 5899 1 1158 32401 77 2 6 chr4 75123774 75124986 -80505134 - L1Md_F2 LINE L1 -2447 3436 2227 1 1158 338 0 33 50 chr4 75124986 75125046 -80505074 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1158 32401 77 1 5 chr4 75125046 75126334 -80503786 - L1Md_F2 LINE L1 -3657 2226 942 1 1158 240 186 0 0 chr4 75126329 75126372 -80503748 - L1VL1 LINE L1 -6377 45 3 1 1158 27 0 0 0 chr4 75126851 75126878 -80503242 + AT_rich Low_complexity Low_complexity 1 27 0 1 1158 1681 261 43 15 chr4 75126883 75127415 -80502705 - Lx3C LINE L1 -2 6974 6428 1 1158 414 0 0 0 chr4 75127795 75127841 -80502279 + (TAA)n Simple_repeat Simple_repeat 1 46 0 1 1158 1341 250 57 3 chr4 75127951 75128268 -80501852 - MTD LTR MaLR -85 334 1 1 1158 1573 191 85 18 chr4 75128277 75128729 -80501391 + RMER4B LTR ERVK 1 456 -10 1 1158 540 234 7 28 chr4 75128771 75128904 -80501216 + MurERV4-int LTR ERVK 45 175 -5085 1 1158 1199 7 7 0 chr4 75128904 75129044 -80501076 + (TTTCC)n Simple_repeat Simple_repeat 5 145 0 1 1158 2310 216 91 13 chr4 75129044 75129572 -80500548 + MurERV4-int LTR ERVK 176 744 -4516 1 1158 1550 178 9 75 chr4 75129576 75129922 -80500198 - Lx4B LINE L1 -430 6628 6306 1 1158 562 55 0 0 chr4 75129922 75129995 -80500125 - RLTR33 LTR ERVK -602 76 4 1 1158 192 77 0 0 chr4 75130002 75130028 -80500092 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1158 1136 95 0 0 chr4 75130028 75130175 -80499945 - B1_Mm SINE Alu 0 147 1 1 1158 370 213 10 41 chr4 75130357 75130455 -80499665 - MurERV4-int LTR ERVK -4011 1249 1155 1 1158 2020 163 196 36 chr4 75130468 75130997 -80499123 - RLTR25A LTR ERVK -530 573 23 1 1158 1457 194 17 12 chr4 75130998 75131378 -80498742 + RMER4B LTR ERVK 168 585 0 2 1158 21 36 0 0 chr4 75131544 75131572 -80498548 + AT_rich Low_complexity Low_complexity 1 28 0 2 1158 36868 51 5 8 chr4 75132069 75138367 -80491753 - L1Md_T LINE L1 0 6582 301 2 1158 21 71 0 0 chr4 75138689 75138731 -80491389 + AT_rich Low_complexity Low_complexity 1 42 0 2 1158 2401 234 83 0 chr4 75138785 75139487 -80490633 + Lx9 LINE L1 6878 7637 -7 2 1158 288 381 79 0 chr4 75139492 75139506 -80490614 + B4 SINE B4 70 93 -199 2 1158 494 285 40 24 chr4 75139506 75139632 -80490488 + B1F2 SINE Alu 3 130 -19 2 1158 606 28 0 0 chr4 75141248 75141320 -80488800 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1158 367 306 79 23 chr4 75141338 75141552 -80488568 + L1MA4 LINE L1 2483 2708 -3435 2 1158 36064 41 1 2 chr4 75141588 75147702 -80482418 - L1Md_T LINE L1 0 6585 383 2 1158 256 313 101 18 chr4 75147727 75148114 -80482006 + L1MA4 LINE L1 2755 3173 -2970 2 1158 244 0 0 53 chr4 75148533 75148571 -80481549 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2 1158 236 331 0 0 chr4 75148612 75148751 -80481369 + L1_Rod LINE L1 4257 4395 -1452 2 1158 916 116 0 0 chr4 75148751 75148880 -80481240 + B2_Mm2 SINE B2 2 130 -65 2 1158 30 0 0 0 chr4 75148886 75148916 -80481204 + AT_rich Low_complexity Low_complexity 1 30 0 2 1158 1087 96 0 0 chr4 75148922 75149056 -80481064 + B1_Mm SINE Alu 2 135 -12 2 1158 281 26 0 26 chr4 75149056 75149095 -80481025 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1158 1087 96 0 0 chr4 75149095 75149106 -80481014 + B1_Mm SINE Alu 136 146 -1 2 1158 728 306 109 18 chr4 75149131 75149691 -80480429 + L1MA4 LINE L1 4437 5047 -1096 2 1158 6570 61 5 9 chr4 75149705 75150598 -80479522 - L1Md_F2 LINE L1 -12 6570 5682 2 1158 36262 31 1 0 chr4 75150638 75157485 -80472635 - L1Md_T LINE L1 0 6585 1 2 1158 7814 80 2 2 chr4 75157481 75158580 -80471540 - L1_Mm LINE L1 -184 5699 4601 2 1158 363 342 6 6 chr4 75158633 75158792 -80471328 + L1MA4 LINE L1 5122 5280 -863 2 1158 384 295 98 33 chr4 75158819 75159383 -80470737 + L1MA4 LINE L1 5323 5919 -381 2 1158 387 0 0 0 chr4 75159396 75159439 -80470681 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1158 734 280 69 10 chr4 75160319 75160521 -80469599 + B3 SINE B2 1 214 -2 2 1158 291 353 15 8 chr4 75160547 75160681 -80469439 + B1F SINE Alu 1 135 -14 2 1158 757 273 10 14 chr4 75161665 75161873 -80468247 - Lx7 LINE L1 -741 6955 6749 2 1158 40 21 0 0 chr4 75161882 75161929 -80468191 + AT_rich Low_complexity Low_complexity 1 47 0 2 1158 252 122 0 0 chr4 75161950 75161991 -80468129 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1158 527 263 6 25 chr4 75162021 75162181 -80467939 + Lx7 LINE L1 7159 7315 -381 2 1158 498 75 0 0 chr4 75162182 75162249 -80467871 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 2 1158 3130 46 3 0 chr4 75162249 75162639 -80467481 - MTA_Mm LTR MaLR -5 391 1 2 1158 257 276 0 33 chr4 75164322 75164373 -80465747 + RMER13A LTR ERVK 1 51 -809 2 1158 321 47 0 0 chr4 75164373 75164416 -80465704 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1158 8324 72 30 3 chr4 75164424 75164571 -80465549 + Lx3_Mus LINE L1 4649 4801 -1085 2 1158 378 0 0 0 chr4 75164571 75164613 -80465507 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1158 8635 84 23 35 chr4 75164613 75166865 -80463255 + Lx3_Mus LINE L1 4802 6999 -10 2 1158 250 71 167 0 chr4 75166902 75166944 -80463176 + RLTR22_Mur LTR ERVK 1 49 -1799 2 1158 21 0 0 0 chr4 75167113 75167134 -80462986 + AT_rich Low_complexity Low_complexity 1 21 0 2 1158 222 37 0 0 chr4 75167335 75167362 -80462758 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1158 788 50 0 0 chr4 75167367 75167467 -80462653 - B1_Mus2 SINE Alu -6 141 42 2 1158 226 211 71 40 chr4 75167410 75167509 -80462611 - RLTR25B LTR ERVK -530 498 397 2 1158 285 0 0 161 chr4 75167510 75167659 -80462461 + (CTCTG)n Simple_repeat Simple_repeat 1 125 0 2 1158 410 67 0 32 chr4 75167661 75167723 -80462397 - B1_Mus1 SINE Alu -88 60 1 2 1158 494 183 19 9 chr4 75167898 75168003 -80462117 + RMER17A-int LTR ERVK 988 1093 -635 2 1158 1871 236 66 75 chr4 75168058 75168709 -80461411 + RMER17A-int LTR ERVK 1084 1728 0 2 1158 2784 175 22 12 chr4 75168714 75169129 -80460991 + RMER13A LTR ERVK 6 423 -437 2 1158 3413 28 2 0 chr4 75169129 75169524 -80460596 + MTA_Mm LTR MaLR 1 396 0 2 1158 2784 175 22 12 chr4 75169524 75169606 -80460514 + RMER13A LTR ERVK 424 507 -353 2 1158 682 188 188 16 chr4 75169612 75169809 -80460311 + RMER13A LTR ERVK 633 908 0 2 1158 270 0 0 0 chr4 75169990 75170020 -80460100 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1158 246 260 66 44 chr4 75170123 75170304 -80459816 + L1M4 LINE L1 4393 4577 -1569 2 1158 328 240 81 54 chr4 75170291 75170476 -80459644 + L1M4 LINE L1 4991 5180 -966 2 1158 392 287 156 27 chr4 75170593 75170926 -80459194 + L1M4 LINE L1 5328 5703 -475 2 1158 402 268 85 116 chr4 75171579 75171908 -80458212 + LTR85a LTR Gypsy? 45 363 -339 2 1158 202 106 43 0 chr4 75171949 75171996 -80458124 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 2 1158 4487 225 27 38 chr4 75172869 75174850 -80455270 - L1_Mur3 LINE L1 -3426 2454 497 2 1158 321 208 0 0 chr4 75174938 75175015 -80455105 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1158 1448 287 40 27 chr4 75175801 75176281 -80453839 + RMER5 LTR ERV1 49 534 0 2 1158 8150 41 4 0 chr4 75176316 75177526 -80452594 - L1Md_F2 LINE L1 0 6582 5369 2 1158 215 342 0 9 chr4 75177740 75177855 -80452265 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 2 1158 202 164 18 18 chr4 75177872 75177928 -80452192 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2 1158 2176 294 49 16 chr4 75180173 75180884 -80449236 + Lx8 LINE L1 6476 7210 -263 2 1158 490 295 141 38 chr4 75181181 75181518 -80448602 - RMER20B LTR ERVK -161 481 127 2 1158 189 0 0 0 chr4 75182200 75182221 -80447899 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1158 324 0 0 0 chr4 75182221 75182256 -80447864 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1158 211 211 0 0 chr4 75182415 75182467 -80447653 + A-rich Low_complexity Low_complexity 1 52 0 2 1158 843 246 17 56 chr4 75183035 75183268 -80446852 - URR1B DNA MER1_type -1 224 1 2 1158 894 180 0 0 chr4 75183336 75183514 -80446606 + GA-rich Low_complexity Low_complexity 3 180 0 2 1158 530 296 94 28 chr4 75183754 75183966 -80446154 + B4A SINE B4 1 226 -66 2 1158 21 36 0 0 chr4 75184148 75184176 -80445944 + AT_rich Low_complexity Low_complexity 1 28 0 2 1158 278 320 39 0 chr4 75184274 75184352 -80445768 - RSINE1 SINE B4 -68 97 17 2 1158 26 0 0 0 chr4 75184786 75184812 -80445308 + AT_rich Low_complexity Low_complexity 1 26 0 2 1158 198 0 0 0 chr4 75185005 75185027 -80445093 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1158 303 0 64 0 chr4 75185404 75185451 -80444669 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1158 351 65 0 0 chr4 75185451 75185497 -80444623 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1158 25 0 0 0 chr4 75185574 75185599 -80444521 + AT_rich Low_complexity Low_complexity 1 25 0 2 1158 343 169 46 0 chr4 75186330 75186395 -80443725 - PB1D9 SINE Alu -7 113 46 2 1158 285 29 0 0 chr4 75186407 75186441 -80443679 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1158 22 80 0 0 chr4 75186442 75186492 -80443628 + AT_rich Low_complexity Low_complexity 1 50 0 2 1158 201 154 0 0 chr4 75187548 75187587 -80442533 + (ATG)n Simple_repeat Simple_repeat 1 39 0 2 1158 1928 159 15 21 chr4 75188699 75188797 -80441323 + ORR1A3 LTR MaLR 1 98 -228 2 1158 2639 36 6 209 chr4 75188797 75189286 -80440834 - RLTR10 LTR ERVK 0 390 1 2 1158 1928 159 15 21 chr4 75189286 75189515 -80440605 + ORR1A3 LTR MaLR 99 326 0 2 1158 769 280 50 0 chr4 75189850 75190032 -80440088 - B3 SINE B2 -17 199 9 2 1158 22 35 0 0 chr4 75190190 75190219 -80439901 + AT_rich Low_complexity Low_complexity 1 29 0 2 1158 504 353 111 11 chr4 75190338 75190527 -80439593 + B3 SINE B2 2 209 -7 2 1158 414 175 12 48 chr4 75190568 75190652 -80439468 + Lx9 LINE L1 867 947 -6661 2 1158 306 188 263 20 chr4 75190680 75190741 -80439379 + Lx9 LINE L1 1168 1241 -6367 2 1158 288 0 0 0 chr4 75190741 75190773 -80439347 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1158 2089 227 92 41 chr4 75190773 75191518 -80438602 + Lx9 LINE L1 1242 2023 -3824 2 1158 8135 243 54 51 chr4 75191528 75192653 -80437467 + Lx9 LINE L1 2765 3898 -1949 2 1158 1650 194 121 14 chr4 75192653 75193009 -80437111 + ORR1B1 LTR MaLR 1 394 0 2 1158 8135 245 57 51 chr4 75193009 75195054 -80435066 + Lx9 LINE L1 3899 5986 -1658 2 1158 641 234 15 0 chr4 75195054 75195191 -80434929 + B1_Mur3 SINE Alu 5 143 -6 2 1158 207 0 0 0 chr4 75195191 75195214 -80434906 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1158 4099 281 98 60 chr4 75195214 75196510 -80433610 + Lx9 LINE L1 5987 7326 -318 2 1158 5402 136 68 19 chr4 75196510 75197443 -80432677 + Lx3B LINE L1 5994 6971 -2 2 1158 4099 281 98 60 chr4 75197443 75197706 -80432414 + Lx9 LINE L1 7327 7593 -51 2 1158 3344 231 15 19 chr4 75198011 75198821 -80431299 + L1VL4 LINE L1 157 963 -5339 2 1158 1859 121 44 0 chr4 75198813 75199178 -80430942 + MusHAL1 LINE L1 27 407 -2305 2 1158 3112 151 7 2 chr4 75199170 75199707 -80430413 + L1_Mus3 LINE L1 4833 5372 -511 2 1158 2572 132 4 70 chr4 75199710 75200165 -80429955 - RLTR13C1 LTR ERVK -2 981 557 2 1158 2473 65 3 48 chr4 75200160 75200514 -80429606 - ORR1A1 LTR MaLR -8 338 1 2 1158 4156 81 7 2 chr4 75200514 75201078 -80429042 - RLTR13C1 LTR ERVK -416 567 1 2 1158 3527 92 0 2 chr4 75201078 75201667 -80428453 + L1_Mus3 LINE L1 5368 5955 -683 2 1158 1594 64 27 5 chr4 75201669 75201890 -80428230 - L1Md_F3 LINE L1 0 6584 6359 2 1158 6412 59 7 0 chr4 75201911 75202737 -80427383 - L1Md_F3 LINE L1 -14 6570 5739 2 1158 4769 95 6 3 chr4 75202738 75203414 -80426706 + L1_Mus3 LINE L1 5958 6635 -3 2 1158 203 152 22 0 chr4 75204428 75204474 -80425646 + GA-rich Low_complexity Low_complexity 3 49 0 2 1158 197 308 11 4 chr4 75204719 75204791 -80425329 + MIRc SINE MIR 23 99 -169 2 1158 285 263 146 56 chr4 75204782 75205003 -80425117 + MIRb SINE MIR 28 260 -2 2 1158 203 167 0 0 chr4 75205405 75205441 -80424679 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1158 559 221 0 0 chr4 75206268 75206372 -80423748 + PB1D9 SINE Alu 1 104 -16 2 1158 350 367 24 71 chr4 75207312 75207482 -80422638 - B4A SINE B4 -128 164 3 2 1158 618 126 0 0 chr4 75207541 75207644 -80422476 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 1158 474 18 0 0 chr4 75208926 75208981 -80421139 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1158 618 96 154 0 chr4 75208984 75209088 -80421032 - PB1D9 SINE Alu 0 120 1 2 1158 295 324 35 18 chr4 75209249 75209362 -80420758 - PB1D7 SINE Alu -1 119 5 2 1158 3917 187 8 55 chr4 75209408 75210046 -80420074 + Lx2 LINE L1 5508 6080 -917 2 1158 1059 62 7 0 chr4 75210046 75210232 -80419888 + L1_Mus2 LINE L1 6411 6566 0 2 1158 3917 212 21 85 chr4 75210232 75210683 -80419437 + Lx2 LINE L1 6081 6529 -468 2 1158 2251 206 39 16 chr4 75211090 75211579 -80418541 + Lx2B LINE L1 6496 6995 -5 3 1158 220 334 98 0 chr4 75211700 75211896 -80418224 + L2a LINE L2 3016 3235 -191 3 1158 289 324 19 10 chr4 75211924 75212027 -80418093 + PB1D10 SINE Alu 13 116 -1 3 1158 263 345 0 0 chr4 75212081 75212165 -80417955 - RSINE1 SINE B4 -27 138 55 3 1158 216 219 0 0 chr4 75212135 75212176 -80417944 - B4 SINE B4 -209 83 43 3 1158 316 296 240 25 chr4 75212235 75212439 -80417681 + MIR SINE MIR 13 260 -2 3 1158 401 204 10 41 chr4 75212481 75212578 -80417542 + L2a LINE L2 3333 3426 0 3 1158 338 278 233 22 chr4 75213121 75213301 -80416819 - MER74B LTR ERVL -21 601 384 3 1158 771 279 71 5 chr4 75213940 75214138 -80415982 + MER58A DNA MER1_type 1 211 -13 3 1158 757 86 19 0 chr4 75214802 75214907 -80415213 + B1_Mm SINE Alu 1 107 -40 3 1158 264 100 0 0 chr4 75214907 75214947 -80415173 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1158 1542 244 16 19 chr4 75215165 75215335 -80414785 + ORR1D1 LTR MaLR 3 177 -197 3 1158 1034 144 0 6 chr4 75215335 75215516 -80414604 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1158 537 16 0 0 chr4 75215518 75215580 -80414540 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1158 1542 244 16 19 chr4 75215580 75215777 -80414343 + ORR1D1 LTR MaLR 178 372 -2 3 1158 733 286 66 12 chr4 75216420 75216664 -80413456 + MER2 DNA MER2_type 2 258 -87 3 1158 270 0 0 0 chr4 75217059 75217089 -80413031 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 1158 227 197 32 32 chr4 75218976 75219039 -80411081 + GA-rich Low_complexity Low_complexity 2 64 0 3 1158 207 69 0 0 chr4 75219110 75219139 -80410981 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1158 187 241 49 49 chr4 75219332 75219393 -80410727 - MIR SINE MIR -32 230 170 3 1158 1164 292 55 43 chr4 75219444 75219931 -80410189 + RMER5 LTR ERV1 38 530 -4 3 1158 234 201 0 9 chr4 75219935 75219990 -80410130 - MIR SINE MIR -94 174 115 3 1158 180 417 0 0 chr4 75220251 75220323 -80409797 - MIR SINE MIR -84 124 53 3 1158 1061 242 75 52 chr4 75220936 75221298 -80408822 - ORR1D2 LTR MaLR 0 370 1 3 1158 186 103 0 0 chr4 75221658 75221687 -80408433 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1158 3610 129 56 19 chr4 75221691 75222284 -80407836 - Lx LINE L1 0 6654 6040 3 1158 268 312 78 0 chr4 75222439 75222516 -80407604 + MER45A DNA Tip100 92 174 -4 3 1158 385 256 0 57 chr4 75222582 75222706 -80407414 + Lx8 LINE L1 6333 6449 -1024 3 1158 914 341 46 27 chr4 75222799 75223384 -80406736 + Lx9 LINE L1 6777 7372 -272 3 1158 388 86 0 28 chr4 75223534 75223606 -80406514 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1158 6815 90 6 9 chr4 75223607 75224935 -80405185 + L1_Mus1 LINE L1 5242 6566 -1 3 1158 2481 125 105 65 chr4 75224955 75225477 -80404643 - L1_Mus4 LINE L1 -7 6629 6087 3 1158 328 203 0 0 chr4 75225545 75225609 -80404511 - Lx2 LINE L1 -573 6424 6361 3 1158 726 293 119 15 chr4 75226197 75226540 -80403580 + RMER5 LTR ERV1 156 534 0 3 1158 452 258 0 11 chr4 75226787 75226881 -80403239 - B3 SINE B2 -6 210 118 3 1158 543 266 8 0 chr4 75226967 75227091 -80403029 + MTD LTR MaLR 7 131 -288 3 1158 358 232 61 0 chr4 75227086 75227168 -80402952 + MTD LTR MaLR 302 388 -31 3 1158 537 205 16 0 chr4 75227425 75227552 -80402568 + Lx4A LINE L1 6928 7056 -2 3 1158 32 0 0 0 chr4 75227552 75227584 -80402536 + AT_rich Low_complexity Low_complexity 1 32 0 3 1158 420 382 67 25 chr4 75227647 75227886 -80402234 + ORR1E LTR MaLR 3 251 -108 3 1158 528 303 57 124 chr4 75228384 75228787 -80401333 - MTE2a LTR MaLR -3 376 1 3 1158 383 55 0 18 chr4 75229002 75229057 -80401063 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 3 1158 226 204 18 18 chr4 75229066 75229121 -80400999 + RLTR15 LTR ERVK 1 55 -304 3 1158 301 272 75 75 chr4 75229150 75229349 -80400771 + RLTR15 LTR ERVK 131 329 -30 3 1158 452 331 7 26 chr4 75229381 75229533 -80400587 - U1 snRNA snRNA -1 164 16 3 1158 243 0 0 0 chr4 75230297 75230324 -80399796 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1158 382 278 78 0 chr4 75232207 75232322 -80397798 - MER89 LTR ERV1 -14 545 422 3 1158 1026 75 0 81 chr4 75232747 75232907 -80397213 + B1_Mus1 SINE Alu 2 148 0 3 1158 1353 302 38 19 chr4 75233524 75234003 -80396117 - RMER5 LTR ERV1 0 534 47 3 1158 375 145 0 0 chr4 75235148 75235231 -80394889 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 3 1159 279 0 0 0 chr4 75235439 75235470 -80394650 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1159 594 300 13 0 chr4 75236328 75236478 -80393642 + B3A SINE B2 6 157 -41 3 1159 3546 90 6 8 chr4 75236820 75237402 -80392718 + L1Md_F2 LINE L1 6092 6582 0 3 1159 1000 181 50 15 chr4 75237514 75237716 -80392404 + ORR1B1 LTR MaLR 3 211 -183 3 1159 536 164 117 66 chr4 75237701 75237838 -80392282 + RMER20B LTR ERVK 484 627 0 3 1159 183 42 0 0 chr4 75238201 75238225 -80391895 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 1159 180 0 0 0 chr4 75239346 75239366 -80390754 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1159 759 266 33 22 chr4 75239825 75240098 -80390022 - Lx2B LINE L1 -5 6995 6720 3 1159 2301 169 6 35 chr4 75240087 75240447 -80389673 - L1_Mur2 LINE L1 -1926 3951 3589 3 1159 267 0 45 23 chr4 75240447 75240491 -80389629 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 1159 1086 75 0 0 chr4 75240491 75240624 -80389496 - B1_Mus2 SINE Alu -13 134 2 3 1159 2301 169 6 35 chr4 75240624 75240752 -80389368 - L1_Mur2 LINE L1 -2289 3588 3477 3 1159 1144 194 252 14 chr4 75241549 75241898 -80388222 - L1_Mur3 LINE L1 -1447 4433 4002 3 1159 29 0 0 0 chr4 75242136 75242165 -80387955 + AT_rich Low_complexity Low_complexity 1 29 0 3 1159 892 282 59 66 chr4 75242213 75242668 -80387452 + RLTR12B LTR ERVK 30 481 -47 3 1159 23 33 0 0 chr4 75244512 75244542 -80385578 + AT_rich Low_complexity Low_complexity 1 30 0 3 1159 279 0 0 0 chr4 75245187 75245218 -80384902 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1159 183 80 0 0 chr4 75245409 75245434 -80384686 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1159 2366 78 20 8 chr4 75248622 75248973 -80381147 + L1_Mus2 LINE L1 6176 6530 -36 3 1159 193 70 0 65 chr4 75249395 75249441 -80380679 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1159 234 238 69 62 chr4 75249452 75249582 -80380538 + L1_Rod LINE L1 535 665 -6507 3 1159 322 79 32 0 chr4 75249600 75249663 -80380457 + (CAAA)n Simple_repeat Simple_repeat 1 65 0 3 1159 4647 175 42 0 chr4 75249778 75250651 -80379469 + Lx2 LINE L1 6088 6997 0 3 1159 5101 130 47 4 chr4 75250659 75251703 -80378417 + L1Md_F LINE L1 275 1372 -4511 3 1159 6463 109 2 22 chr4 75251703 75252684 -80377436 + L1Md_F2 LINE L1 5622 6582 0 3 1159 10237 80 14 23 chr4 75252769 75255161 -80374959 + L1Md_F LINE L1 388 2757 -3126 3 1159 3550 52 2 7 chr4 75255162 75255611 -80374509 + L1Md_F2 LINE L1 6135 6581 -1 3 1159 568 297 97 37 chr4 75255647 75256294 -80373826 + L1_Rod LINE L1 1336 2021 -3826 3 1159 692 236 7 0 chr4 75256581 75256725 -80373395 + B1_Mur2 SINE Alu 5 149 0 3 1159 969 303 21 36 chr4 75256728 75257194 -80372926 + L1_Rod LINE L1 2198 2656 -3191 3 1159 465 206 163 23 chr4 75257231 75257360 -80372760 - B3 SINE B2 0 216 70 3 1159 302 264 88 26 chr4 75257516 75257742 -80372378 - L1MA8 LINE L1 -5 6286 6047 3 1159 345 217 156 28 chr4 75258626 75258735 -80371385 + B4 SINE B4 1 123 -169 3 1159 282 116 0 0 chr4 75258885 75258928 -80371192 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1159 204 125 0 0 chr4 75258945 75258977 -80371143 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 3 1159 330 287 125 56 chr4 75258977 75259121 -80370999 + HAL1-3A_ME LINE L1 2284 2437 -421 3 1159 777 280 76 20 chr4 75259254 75259451 -80370669 + B3 SINE B2 2 209 -7 3 1159 652 251 65 39 chr4 75259535 75260148 -80369972 - L1MA8 LINE L1 -690 5601 4973 3 1159 426 39 0 0 chr4 75260148 75260200 -80369920 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 3 1159 426 311 40 18 chr4 75260431 75260654 -80369466 + L1M3e LINE L1 1853 2080 -4950 3 1159 382 308 99 24 chr4 75260709 75260962 -80369158 + L1M4 LINE L1 1286 1557 -4985 3 1159 253 318 0 16 chr4 75261048 75261112 -80369008 + RSINE1 SINE B4 83 145 -20 3 1159 32 0 0 0 chr4 75261147 75261179 -80368941 + AT_rich Low_complexity Low_complexity 1 32 0 3 1159 205 286 81 23 chr4 75261904 75261990 -80368130 - MIR3 SINE MIR -51 157 67 3 1159 3271 11 0 5 chr4 75262741 75263110 -80367010 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1159 53114 22 16 2 chr4 75263110 75269491 -80360629 - IAPEz-int LTR ERVK 0 6481 8 3 1159 3271 11 0 5 chr4 75269491 75269860 -80360260 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1159 244 335 165 58 chr4 75270673 75270933 -80359187 + L3b LINE CR1 160 447 -35 3 1159 616 56 22 0 chr4 75271368 75271457 -80358663 + (TAA)n Simple_repeat Simple_repeat 3 93 0 3 1159 746 22 11 0 chr4 75271715 75271807 -80358313 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1159 866 191 105 24 chr4 75271895 75272104 -80358016 + URR1A DNA MER1_type 1 226 0 3 1159 22535 74 3 7 chr4 75272323 75276056 -80354064 + L1Md_F3 LINE L1 632 4342 -1541 3 1159 4836 55 8 8 chr4 75276056 75276679 -80353441 + L1Md_F3 LINE L1 5962 6584 0 3 1159 537 347 26 0 chr4 75276696 75276889 -80353231 + B3A SINE B2 1 198 0 3 1159 183 42 0 0 chr4 75276893 75276917 -80353203 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1159 7149 57 6 22 chr4 75276918 75277855 -80352265 + L1Md_F2 LINE L1 5650 6571 -11 3 1159 550 288 128 38 chr4 75278357 75278592 -80351528 + RMER15 LTR ERVL 279 534 -41 3 1159 4139 186 156 7 chr4 75278596 75279629 -80350491 - L1_Mur2 LINE L1 -2130 3747 2561 3 1159 2582 264 30 22 chr4 75279654 75280456 -80349664 - MYSERV6-int LTR ERVK -174 8785 7978 3 1159 269 301 159 0 chr4 75280555 75280668 -80349452 - MLT1J1 LTR MaLR -302 142 12 3 1159 1202 255 33 20 chr4 75280715 75281019 -80349101 - MTE2a LTR MaLR -4 375 68 4 1159 238 317 157 12 chr4 75281031 75281114 -80349006 - MTE2a LTR MaLR -284 95 1 4 1159 210 276 92 0 chr4 75282114 75282190 -80347930 + B4A SINE B4 5 87 -205 4 1159 27 49 0 0 chr4 75282280 75282321 -80347799 + AT_rich Low_complexity Low_complexity 1 41 0 4 1159 23 33 0 0 chr4 75283027 75283057 -80347063 + AT_rich Low_complexity Low_complexity 1 30 0 4 1159 572 338 27 40 chr4 75283772 75284068 -80346052 + B4A SINE B4 1 292 0 4 1159 189 0 0 0 chr4 75284078 75284099 -80346021 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 1159 218 286 0 67 chr4 75284363 75284424 -80345696 + polypyrimidine Low_complexity Low_complexity 59 113 0 4 1159 749 41 10 0 chr4 75284424 75284521 -80345599 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 1159 218 286 0 67 chr4 75284521 75284579 -80345541 + polypyrimidine Low_complexity Low_complexity 2 58 0 4 1159 289 86 17 17 chr4 75285233 75285292 -80344828 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1159 1509 163 53 90 chr4 75286619 75286942 -80343178 + ORR1B1 LTR MaLR 41 351 -43 4 1159 607 209 76 8 chr4 75286943 75287146 -80342974 - RLTR25A LTR ERVK 0 1028 707 4 1159 3051 178 13 51 chr4 75287146 75287751 -80342369 - RLTR25A LTR ERVK -521 582 1 4 1159 325 87 0 0 chr4 75287753 75287799 -80342321 + ORR1B1 LTR MaLR 349 394 0 4 1159 3330 216 95 54 chr4 75287799 75288795 -80341325 + ORR1B1-int LTR MaLR 1 1037 -926 4 1159 602 141 20 0 chr4 75288796 75288895 -80341225 + Lx LINE L1 6160 6260 -394 4 1159 5042 104 5 9 chr4 75288907 75289655 -80340465 + L1_Mus4 LINE L1 5892 6636 0 4 1159 864 111 0 0 chr4 75289663 75289798 -80340322 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 4 1159 4057 174 16 33 chr4 75289816 75290635 -80339485 + Lx2B LINE L1 5587 6391 -609 4 1159 222 37 0 0 chr4 75290716 75290743 -80339377 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1159 892 318 60 57 chr4 75291569 75291744 -80338376 - ORR1E LTR MaLR -5 354 180 4 1159 489 17 0 0 chr4 75291744 75291802 -80338318 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1159 892 318 60 57 chr4 75291802 75291979 -80338141 - ORR1E LTR MaLR -180 179 2 4 1159 1161 70 0 0 chr4 75293217 75293359 -80336761 + B1_Mus1 SINE Alu 1 142 -6 4 1159 1706 64 4 29 chr4 75293394 75293636 -80336484 + L1Md_F2 LINE L1 6343 6578 -4 4 1159 871 104 20 29 chr4 75294904 75295149 -80334971 + (TAGA)n Simple_repeat Simple_repeat 1 243 0 4 1159 334 139 57 38 chr4 75295187 75295344 -80334776 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 4 1159 540 203 0 8 chr4 75295425 75295544 -80334576 - Lx4B LINE L1 -331 6727 6610 4 1159 496 162 0 19 chr4 75296058 75296165 -80333955 + T-rich Low_complexity Low_complexity 3 107 0 4 1159 736 220 14 7 chr4 75296173 75296186 -80333934 - B1_Mus2 SINE Alu 0 147 135 4 1159 1317 78 0 0 chr4 75296186 75296365 -80333755 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1159 736 220 14 7 chr4 75296365 75296493 -80333627 - B1_Mus2 SINE Alu -13 134 5 4 1159 1142 75 0 7 chr4 75297886 75298034 -80332086 - B1_Mus2 SINE Alu 0 147 1 4 1159 237 208 0 20 chr4 75298112 75298161 -80331959 + MTD LTR MaLR 1 48 -371 4 1159 27 0 0 0 chr4 75298189 75298216 -80331904 + AT_rich Low_complexity Low_complexity 1 27 0 4 1159 2238 117 6 3 chr4 75298225 75298560 -80331560 - Lx3B LINE L1 -85 6888 6553 4 1159 752 77 0 0 chr4 75298562 75298679 -80331441 - L1Md_F2 LINE L1 -12 6570 6454 4 1159 1497 54 0 0 chr4 75298679 75298863 -80331257 + L1Md_F2 LINE L1 6186 6369 -213 4 1159 955 230 34 21 chr4 75298932 75299167 -80330953 + MTD LTR MaLR 182 419 0 4 1159 317 283 22 0 chr4 75299858 75299950 -80330170 - MLT1C LTR MaLR -54 413 320 4 1159 2426 296 119 16 chr4 75300515 75301216 -80328904 - Lx8 LINE L1 -4 7469 6707 4 1159 3454 33 0 0 chr4 75301216 75301612 -80328508 + MTA_Mm LTR MaLR 1 396 0 4 1159 2426 289 263 13 chr4 75301612 75302015 -80328105 - Lx8 LINE L1 -767 6706 6192 4 1159 956 303 7 7 chr4 75302077 75302356 -80327764 + RMER15-int LTR ERVL 1184 1462 -3537 4 1159 1567 306 23 41 chr4 75302573 75303128 -80326992 + RMER15-int LTR ERVL 1736 2280 -2719 4 1159 261 0 0 0 chr4 75304587 75304616 -80325504 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1159 514 339 81 0 chr4 75305029 75305203 -80324917 + ID_B1 SINE B4 25 212 -12 4 1159 1035 164 50 27 chr4 75305379 75305598 -80324522 - URR1A DNA MER1_type -2 224 1 4 1159 991 226 116 38 chr4 75305642 75306178 -80323942 - L1_Mur3 LINE L1 -4082 1798 1205 4 1159 366 115 0 0 chr4 75306184 75306245 -80323875 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1159 3740 40 2 0 chr4 75306365 75306817 -80323303 - L1Md_T LINE L1 0 6582 6130 4 1159 4495 211 42 31 chr4 75306868 75307964 -80322156 - ORR1B2-int LTR MaLR -540 1423 2 4 1159 1283 238 8 0 chr4 75307964 75308211 -80321909 - ORR1B2 LTR MaLR -118 249 1 4 1159 1335 195 75 11 chr4 75308241 75308589 -80321531 + Lx9 LINE L1 7269 7638 -6 4 1159 975 253 105 14 chr4 75308954 75309231 -80320889 - ORR1D2 LTR MaLR -11 359 58 4 1159 23 0 0 0 chr4 75311452 75311475 -80318645 + AT_rich Low_complexity Low_complexity 1 23 0 4 1159 1850 170 16 0 chr4 75311712 75312024 -80318096 + ORR1A2 LTR MaLR 3 319 -8 4 1159 1744 317 89 22 chr4 75312052 75313281 -80316839 - L1_Mur3 LINE L1 -201 5679 4369 4 1159 297 0 0 0 chr4 75313310 75313343 -80316777 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1159 482 270 18 0 chr4 75313363 75313526 -80316594 - L1_Mur3 LINE L1 -1692 4188 4023 4 1159 550 230 29 16 chr4 75313502 75313715 -80316405 + Lx8 LINE L1 5709 5927 -1546 4 1159 933 339 58 72 chr4 75314070 75314361 -80315759 + Lx8 LINE L1 6089 6414 -1059 4 1159 3179 23 2 69 chr4 75314361 75314779 -80315341 - RLTR10 LTR ERVK 0 390 1 4 1159 933 305 44 26 chr4 75314779 75315410 -80314710 + Lx8 LINE L1 6415 6920 -553 4 1159 303 68 227 0 chr4 75315406 75315450 -80314670 - L1_Mus1 LINE L1 -773 5863 5810 4 1159 4901 88 0 0 chr4 75315450 75316122 -80313998 + L1_Mus1 LINE L1 5896 6567 0 4 1159 1242 310 54 41 chr4 75316211 75316696 -80313424 + Lx8 LINE L1 6981 7471 -2 4 1159 1891 306 121 18 chr4 75316823 75317702 -80312418 + Lx8 LINE L1 6054 7022 -451 4 1159 243 246 58 0 chr4 75318134 75318203 -80311917 + B4A SINE B4 216 288 -4 4 1159 459 100 0 0 chr4 75318222 75318292 -80311828 + (CATA)n Simple_repeat Simple_repeat 4 73 0 4 1159 228 257 35 79 chr4 75318355 75318469 -80311651 - MurSatRep1 Unknown Unknown -1825 312 204 4 1159 679 260 43 24 chr4 75318558 75318767 -80311353 - Lx5 LINE L1 -748 6302 6090 4 1159 3660 212 11 10 chr4 75318765 75319460 -80310660 + Lx5 LINE L1 6301 6996 -54 4 1159 10719 93 17 1 chr4 75319459 75321722 -80308398 + L1_Mus1 LINE L1 4280 6567 0 4 1159 251 212 30 0 chr4 75321733 75321799 -80308321 + Lx5 LINE L1 6982 7049 -1 4 1159 932 282 13 0 chr4 75323213 75323447 -80306673 + Lx9 LINE L1 7045 7281 -363 4 1159 778 240 58 67 chr4 75323875 75324098 -80306022 + MTEa LTR MaLR 151 371 -8 4 1159 205 260 0 20 chr4 75324683 75324734 -80305386 + (CATG)n Simple_repeat Simple_repeat 1 50 0 4 1159 689 261 151 68 chr4 75324787 75324847 -80305273 + MT2B LTR ERVL 1 55 -478 4 1159 513 0 0 0 chr4 75324847 75324904 -80305216 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1159 1073 221 60 53 chr4 75324904 75325237 -80304883 + MT2B LTR ERVL 56 540 -61 4 1159 291 54 0 0 chr4 75325237 75325274 -80304846 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1159 467 189 69 43 chr4 75325274 75325285 -80304835 + MT2B LTR ERVL 419 429 -46 4 1159 1177 55 0 0 chr4 75325287 75325432 -80304688 - B1_Mus1 SINE Alu -2 146 2 4 1159 441 50 0 0 chr4 75326423 75326483 -80303637 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1159 237 205 45 124 chr4 75327566 75327655 -80302465 - MER5A1 DNA MER1_type -81 85 4 4 1159 211 386 79 0 chr4 75327887 75328014 -80302106 + MIR SINE MIR 7 143 -119 4 1159 206 153 71 18 chr4 75328632 75328745 -80301375 + (TATATG)n Simple_repeat Simple_repeat 5 123 0 4 1159 342 385 24 53 chr4 75328766 75328936 -80301184 - RSINE1 SINE B4 0 165 1 4 1159 274 82 69 23 chr4 75329429 75329516 -80300604 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1159 312 70 0 0 chr4 75329562 75329605 -80300515 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1159 234 91 0 0 chr4 75329623 75329656 -80300464 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 4 1159 2446 311 60 25 chr4 75329659 75329982 -80300138 - Lx7 LINE L1 -397 7299 6966 4 1159 3506 195 78 139 chr4 75329982 75330472 -80299648 + RMER17B LTR ERVK 1 526 -432 4 1159 1038 93 0 0 chr4 75330472 75330612 -80299508 + B1_Mus1 SINE Alu 2 141 -7 4 1159 3506 195 78 139 chr4 75330612 75331141 -80298979 + RMER17B LTR ERVK 527 958 0 4 1159 2446 311 60 25 chr4 75331141 75331740 -80298380 - Lx7 LINE L1 -731 6965 6345 4 1159 309 333 24 48 chr4 75332353 75332479 -80297641 - RSINE1 SINE B4 -40 125 3 4 1159 422 279 32 16 chr4 75333229 75333353 -80296767 - MER5A1 DNA MER1_type -7 159 34 4 1159 30571 94 17 7 chr4 75333499 75336378 -80293742 + L1Md_F2 LINE L1 584 3476 -2407 4 1159 323 0 48 0 chr4 75336378 75336420 -80293700 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1159 30571 84 8 7 chr4 75336420 75338507 -80291613 + L1Md_F2 LINE L1 3477 5583 -300 4 1159 7508 68 6 7 chr4 75338509 75339505 -80290615 + L1Md_F2 LINE L1 5587 6581 -1 4 1159 24 0 0 0 chr4 75339632 75339656 -80290464 + AT_rich Low_complexity Low_complexity 1 24 0 4 1159 2237 209 149 58 chr4 75339656 75340393 -80289727 - Lx4B LINE L1 -5 7053 6250 4 1159 4374 167 66 75 chr4 75340397 75341409 -80288711 - L1_Mur2 LINE L1 -61 5816 4814 4 1159 14236 171 29 48 chr4 75341406 75345201 -80284919 - L1Md_F2 LINE L1 -519 6063 2342 4 1159 2135 193 25 17 chr4 75345184 75345712 -80284408 - L1Md_F2 LINE L1 -4143 1734 1203 4 1159 225 195 0 0 chr4 75345713 75345754 -80284366 - Lx8 LINE L1 -1067 6406 6366 4 1159 352 362 58 11 chr4 75345755 75345945 -80284175 + MamRep137 DNA TcMar? 246 444 0 4 1159 579 15 0 0 chr4 75346159 75346227 -80283893 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1159 261 0 0 0 chr4 75347378 75347407 -80282713 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1159 239 368 60 0 chr4 75347417 75347534 -80282586 + MIR3 SINE MIR 70 193 -15 4 1159 204 167 0 0 chr4 75348117 75348165 -80281955 + GA-rich Low_complexity Low_complexity 2 49 0 4 1159 477 0 0 0 chr4 75349814 75349867 -80280253 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1159 263 150 17 0 chr4 75349868 75349928 -80280192 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 4 1159 315 283 114 27 chr4 75351178 75351327 -80278793 - Cheshire DNA MER1_type -2125 295 134 4 1159 2199 322 130 24 chr4 75351361 75352649 -80277471 - Lx7 LINE L1 -551 7145 5717 4 1159 27027 88 99 18 chr4 75352650 75358506 -80271614 - L1Md_F2 LINE L1 -2 6580 215 4 1159 630 197 28 14 chr4 75358506 75358650 -80271470 - Lx7 LINE L1 -1957 5739 5594 4 1159 1487 245 36 19 chr4 75358658 75359074 -80271046 + L1_Mur3 LINE L1 4851 5273 -607 4 1159 421 156 26 35 chr4 75359081 75359194 -80270926 - Lx LINE L1 -1 6653 6542 4 1159 964 57 0 0 chr4 75359203 75359326 -80270794 - L1_Mm LINE L1 -412 5471 5349 4 1159 701 221 0 0 chr4 75359322 75359458 -80270662 - L1_Mur1 LINE L1 -316 5570 5435 4 1159 1418 132 8 23 chr4 75359481 75359738 -80270382 - L1_Mur2 LINE L1 -1551 4326 4074 4 1159 738 34 0 0 chr4 75359783 75359872 -80270248 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1159 823 237 72 5 chr4 75359986 75360181 -80269939 - B3 SINE B2 -4 212 5 5 1159 273 347 99 36 chr4 75360197 75360418 -80269702 + LTR37A LTR ERV1 101 335 -91 5 1159 346 347 32 32 chr4 75362060 75362185 -80267935 + B3 SINE B2 3 127 -89 5 1159 435 52 0 0 chr4 75362205 75362263 -80267857 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1159 1750 118 11 25 chr4 75362364 75362650 -80267470 - L1_Mus3 LINE L1 -8 6630 6349 5 1159 1154 96 0 0 chr4 75362650 75362807 -80267313 + L1_Mus3 LINE L1 6066 6222 -416 5 1159 22 35 0 0 chr4 75364025 75364054 -80266066 + AT_rich Low_complexity Low_complexity 1 29 0 5 1159 21 0 0 0 chr4 75364125 75364146 -80265974 + AT_rich Low_complexity Low_complexity 1 21 0 5 1159 1383 239 8 37 chr4 75364187 75364565 -80265555 - ORR1D2 LTR MaLR -3 367 1 5 1159 1981 168 108 0 chr4 75365045 75365425 -80264695 + MTC LTR MaLR 1 421 0 5 1159 408 40 0 0 chr4 75366320 75366370 -80263750 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1160 324 48 0 0 chr4 75366472 75366514 -80263606 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1160 483 254 0 0 chr4 75366571 75366709 -80263411 + (TA)n Simple_repeat Simple_repeat 2 139 0 5 1160 243 0 0 0 chr4 75366725 75366752 -80263368 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1160 371 371 100 57 chr4 75367170 75367821 -80262299 - LTR85a LTR Gypsy? 0 702 24 5 1160 400 283 53 33 chr4 75368019 75368169 -80261951 + RSINE1 SINE B4 11 163 -2 5 1160 393 277 10 0 chr4 75368415 75368516 -80261604 - Lx9 LINE L1 -1007 6637 6536 5 1160 283 178 0 52 chr4 75368544 75368621 -80261499 + Lx9 LINE L1 7519 7591 -53 5 1160 9785 125 18 1 chr4 75368625 75370155 -80259965 + L1_Mm LINE L1 4248 5802 -81 5 1160 915 291 119 34 chr4 75370155 75370518 -80259602 - MTD LTR MaLR -19 381 11 5 1160 25 0 0 0 chr4 75370906 75370931 -80259189 + AT_rich Low_complexity Low_complexity 1 25 0 5 1160 253 325 39 39 chr4 75371606 75371734 -80258386 + MER5B DNA MER1_type 6 133 -45 5 1160 1036 302 70 74 chr4 75371743 75372255 -80257865 - Lx8 LINE L1 -6 7467 6958 5 1160 468 214 58 10 chr4 75372272 75372376 -80257744 - PB1D9 SINE Alu -1 119 11 5 1160 560 226 72 7 chr4 75372396 75372534 -80257586 - Lx8 LINE L1 -676 6797 6651 5 1160 1147 85 11 11 chr4 75373548 75373726 -80256394 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 5 1160 534 381 25 0 chr4 75373726 75374004 -80256116 - Lx8 LINE L1 -142 7331 7047 5 1160 406 244 124 49 chr4 75375553 75375738 -80254382 - L1MA8 LINE L1 -442 5849 5651 5 1160 207 0 0 0 chr4 75375779 75375802 -80254318 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1160 563 297 6 19 chr4 75375805 75375966 -80254154 - B3A SINE B2 -38 160 2 5 1160 22 0 0 0 chr4 75376028 75376050 -80254070 + AT_rich Low_complexity Low_complexity 1 22 0 5 1160 824 264 61 50 chr4 75376179 75376696 -80253424 - L1MA8 LINE L1 -770 5542 5027 5 1160 1829 173 34 28 chr4 75376713 75377070 -80253050 - ORR1B2 LTR MaLR -8 359 1 5 1160 676 315 37 15 chr4 75377073 75377399 -80252721 - L1MA8 LINE L1 -1126 5017 4685 5 1160 1972 201 115 9 chr4 75377420 75377968 -80252152 - Lx9 LINE L1 -3 7641 7036 5 1160 299 249 58 19 chr4 75377960 75378146 -80251974 - L1MA8 LINE L1 -1774 4369 4178 5 1160 206 140 35 0 chr4 75378563 75378620 -80251500 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 5 1160 5552 112 32 5 chr4 75378639 75380230 -80249890 + L1VL2 LINE L1 85 1722 -1893 5 1160 487 243 70 12 chr4 75380230 75380422 -80249698 + MT2B LTR ERVL 243 575 -26 5 1160 488 292 200 15 chr4 75380429 75381158 -80248962 - L1MA8 LINE L1 -2606 3537 2674 5 1160 365 0 22 0 chr4 75381343 75381388 -80248732 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1160 9636 12 0 1 chr4 75381574 75382670 -80247450 + L1Md_A LINE L1 4492 5586 -297 5 1160 8749 14 1 0 chr4 75382670 75383664 -80246456 + L1Md_A LINE L1 5587 6581 -1 5 1160 7433 82 23 2 chr4 75383827 75384877 -80245243 - L1_Mm LINE L1 -734 5149 4078 5 1160 4135 88 18 0 chr4 75384887 75385454 -80244666 + L1_Mus1 LINE L1 5991 6567 0 5 1160 21 0 0 0 chr4 75386607 75386628 -80243492 + AT_rich Low_complexity Low_complexity 1 21 0 5 1160 1548 298 52 9 chr4 75388088 75388718 -80241402 + L1MA4 LINE L1 5273 5929 -371 5 1160 25 75 0 0 chr4 75388780 75388833 -80241287 + AT_rich Low_complexity Low_complexity 1 53 0 5 1160 247 293 144 50 chr4 75390996 75391197 -80238923 - MIRb SINE MIR -6 262 40 5 1160 946 118 12 0 chr4 75391359 75391520 -80238600 + (TC)n Simple_repeat Simple_repeat 2 164 0 5 1160 381 288 124 32 chr4 75392115 75392361 -80237759 - MT2A LTR ERVL -4 529 213 5 1160 258 321 73 51 chr4 75392311 75392488 -80237632 - MTEa LTR MaLR -158 221 41 5 1160 556 277 23 0 chr4 75392541 75392671 -80237449 - B1_Mur1 SINE Alu -7 142 10 5 1160 1286 235 3 88 chr4 75395252 75395569 -80234551 + ORR1C1 LTR MaLR 1 290 -88 5 1160 2635 183 62 12 chr4 75395582 75396240 -80233880 + L1_Mur3 LINE L1 1203 1893 -3987 5 1160 1869 196 5 15 chr4 75396239 75396633 -80233487 + L1_Mur3 LINE L1 2500 2889 -2988 5 1160 1957 323 68 93 chr4 75396631 75397872 -80232248 + Lx5 LINE L1 5765 6974 -76 5 1160 249 226 19 0 chr4 75397899 75397952 -80232168 + ORR1C1 LTR MaLR 318 371 -7 5 1160 2428 249 46 17 chr4 75397954 75398656 -80231464 - RCHARR1 DNA MER1_type -29 945 224 5 1160 2320 222 68 52 chr4 75398658 75399490 -80230630 - L1_Rod LINE L1 -983 4864 4019 5 1160 489 270 15 87 chr4 75401243 75401428 -80228692 + MLT1B LTR MaLR 1 171 -219 5 1160 646 302 43 24 chr4 75401428 75401635 -80228485 + B4A SINE B4 1 211 -81 5 1160 2544 107 21 13 chr4 75401635 75402022 -80228098 - Lx LINE L1 -596 6058 5669 5 1160 3033 164 51 11 chr4 75402028 75402594 -80227526 + Lx LINE L1 6055 6643 -11 5 1160 227 395 35 0 chr4 75402607 75402693 -80227427 + B4A SINE B4 202 290 -2 5 1160 303 362 31 18 chr4 75402739 75402961 -80227159 + MLT1B LTR MaLR 162 386 -4 5 1160 378 0 0 0 chr4 75403101 75403143 -80226977 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1160 408 40 0 0 chr4 75403321 75403371 -80226749 + (CAA)n Simple_repeat Simple_repeat 3 52 0 5 1160 443 195 70 0 chr4 75403888 75403995 -80226125 + B3A SINE B2 1 115 -101 5 1160 1054 96 7 0 chr4 75404145 75404291 -80225829 + B1_Mus1 SINE Alu 2 148 0 5 1160 294 95 0 0 chr4 75404296 75404338 -80225782 + (GGA)n Simple_repeat Simple_repeat 3 44 0 5 1160 1415 210 78 49 chr4 75404350 75404695 -80225425 - RMER2 LTR ERV1 -207 360 6 5 1160 333 0 0 0 chr4 75404753 75404790 -80225330 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1160 207 0 0 0 chr4 75404845 75404868 -80225252 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1160 2063 200 55 54 chr4 75405248 75405808 -80224312 + RLTR31_Mm LTR ERVK 1 561 0 5 1160 21 36 0 0 chr4 75405882 75405910 -80224210 + AT_rich Low_complexity Low_complexity 1 28 0 5 1160 234 0 0 0 chr4 75406352 75406378 -80223742 + (TAA)n Simple_repeat Simple_repeat 1 26 0 5 1160 221 250 29 0 chr4 75406443 75406511 -80223609 + GA-rich Low_complexity Low_complexity 5 74 0 5 1160 660 269 141 97 chr4 75406956 75407318 -80222802 + MTE2a LTR MaLR 1 378 -1 5 1160 254 270 54 0 chr4 75407444 75407518 -80222602 + MIRm SINE MIR 197 274 -2 5 1160 689 337 92 75 chr4 75408926 75409581 -80220539 + RMER13A LTR ERVK 98 763 -97 5 1160 7215 46 7 3 chr4 75410938 75411831 -80218289 + L1Md_F2 LINE L1 5683 6578 -4 5 1160 234 406 48 18 chr4 75412717 75412885 -80217235 - MLT1H LTR MaLR -300 249 77 5 1160 1961 280 62 21 chr4 75413214 75414242 -80215878 - Lx7 LINE L1 -1459 6237 5151 5 1160 2756 227 81 47 chr4 75414246 75415190 -80214930 + Lx7 LINE L1 4159 5134 -746 5 1160 218 360 68 54 chr4 75416231 75416378 -80213742 - MIRb SINE MIR -46 222 74 5 1160 232 348 0 0 chr4 75416588 75416677 -80213443 - L1MC2 LINE L1 -361 5983 5895 5 1160 1619 155 35 57 chr4 75416826 75417283 -80212837 - RMER17C LTR ERVK -519 439 5 5 1160 433 108 24 12 chr4 75417853 75417937 -80212183 - L1Md_F2 LINE L1 -2 6580 6496 5 1160 351 269 51 0 chr4 75418179 75418257 -80211863 + PB1D10 SINE Alu 3 84 -33 5 1160 991 66 102 0 chr4 75418377 75418514 -80211606 - L1Md_F2 LINE L1 -555 6027 5877 5 1160 244 293 17 0 chr4 75418622 75418680 -80211440 + MLT1I LTR MaLR 98 156 -255 5 1160 4369 58 0 4 chr4 75418686 75419237 -80210883 + L1Md_F2 LINE L1 6018 6566 -16 5 1160 25 0 0 0 chr4 75419237 75419262 -80210858 + AT_rich Low_complexity Low_complexity 1 25 0 5 1160 333 0 0 0 chr4 75419770 75419807 -80210313 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1160 723 117 9 1 chr4 75419807 75419915 -80210205 - B1_Mus2 SINE Alu -9 138 31 5 1160 344 342 48 30 chr4 75420871 75421037 -80209083 + MER44D DNA MER2_type 2 170 -535 5 1160 3225 271 63 16 chr4 75421111 75421620 -80208500 - Lx6 LINE L1 -163 7297 6761 5 1160 596 38 13 0 chr4 75421620 75421699 -80208421 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 5 1160 3225 271 63 16 chr4 75421699 75422088 -80208032 - Lx6 LINE L1 -700 6760 6356 5 1160 343 277 29 131 chr4 75422106 75422243 -80207877 - Lx6 LINE L1 -1421 6039 5917 5 1160 1396 171 8 15 chr4 75422234 75422501 -80207619 + Lx6 LINE L1 5654 5918 -1542 5 1160 722 331 235 35 chr4 75422500 75422946 -80207174 - Lx8 LINE L1 -4 7469 6935 5 1160 339 239 91 9 chr4 75423046 75423156 -80206964 - Lx5 LINE L1 0 7050 6932 5 1160 2292 176 59 25 chr4 75423136 75423608 -80206512 - Lx5 LINE L1 -770 6280 5793 5 1160 201 273 0 29 chr4 75423846 75423914 -80206206 + GA-rich Low_complexity Low_complexity 1 66 0 5 1160 2990 214 23 15 chr4 75424416 75425029 -80205091 + RLTR17 LTR ERVK 4 621 -71 5 1160 234 0 0 0 chr4 75425062 75425088 -80205032 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1160 576 324 51 11 chr4 75425800 75425975 -80204145 + ID_B1 SINE B4 35 216 -8 5 1160 339 25 0 0 chr4 75426039 75426079 -80204041 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1160 498 57 0 0 chr4 75426725 75426795 -80203325 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1160 203 309 29 0 chr4 75427643 75427711 -80202409 + CT-rich Low_complexity Low_complexity 3 72 0 5 1160 530 30 69 0 chr4 75428274 75428375 -80201745 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1160 451 151 65 0 chr4 75428396 75428489 -80201631 - L1_Mus3 LINE L1 -7 6631 6533 5 1160 193 196 18 18 chr4 75428554 75428611 -80201509 + CT-rich Low_complexity Low_complexity 2 58 0 5 1160 616 294 46 49 chr4 75429939 75430160 -80199960 - MIRc SINE MIR -41 221 5 5 1160 492 18 0 0 chr4 75430583 75430640 -80199480 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1160 307 370 63 11 chr4 75431209 75431384 -80198736 + MIR SINE MIR 74 257 -5 6 1160 509 242 47 8 chr4 75431590 75431719 -80198401 + MER121 Unknown Unknown 115 248 -164 6 1160 277 267 107 0 chr4 75432623 75432698 -80197422 + MIRb SINE MIR 112 194 -74 6 1160 474 49 0 0 chr4 75432847 75432908 -80197212 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1160 452 274 28 43 chr4 75432970 75433111 -80197009 - B1F2 SINE Alu 0 149 11 6 1160 1053 130 0 5 chr4 75433149 75433335 -80196785 + Lx2B LINE L1 6813 6997 -3 6 1160 615 104 0 0 chr4 75434426 75434532 -80195588 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1160 241 347 0 0 chr4 75434532 75434604 -80195516 - ID4 SINE ID -7 76 5 6 1160 449 311 0 40 chr4 75435373 75435497 -80194623 - ID_B1 SINE B4 -6 218 100 6 1160 185 254 32 63 chr4 75437803 75437866 -80192254 - MER5A DNA MER1_type -44 145 85 6 1160 434 327 60 42 chr4 75438033 75438250 -80191870 + MIR SINE MIR 16 236 -26 6 1160 1108 269 21 119 chr4 75438681 75439054 -80191066 - MTE2b LTR MaLR -1 369 33 6 1160 227 358 0 0 chr4 75439326 75439393 -80190727 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 6 1160 439 316 31 25 chr4 75439804 75439966 -80190154 + RSINE1 SINE B4 3 165 0 6 1160 224 111 0 100 chr4 75440827 75440877 -80189243 + polypyrimidine Low_complexity Low_complexity 2 46 0 6 1160 222 75 18 54 chr4 75441244 75441300 -80188820 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 6 1160 338 204 11 0 chr4 75441471 75441564 -80188556 + GA-rich Low_complexity Low_complexity 2 95 0 6 1160 304 325 78 36 chr4 75441564 75441730 -80188390 + HAL1-3A_ME LINE L1 2285 2457 -401 6 1160 634 325 40 36 chr4 75441807 75442136 -80187984 - MLT1A0 LTR MaLR -3 362 33 6 1160 4290 66 3 14 chr4 75443023 75443594 -80186526 - L1Md_F2 LINE L1 0 6582 6018 6 1160 244 293 17 0 chr4 75443600 75443658 -80186462 - MLT1I LTR MaLR -255 156 98 6 1160 2554 74 3 3 chr4 75444104 75444442 -80185678 + L1_Mus1 LINE L1 6230 6567 0 6 1160 1511 135 24 142 chr4 75445626 75445998 -80184122 + ORR1B1 LTR MaLR 1 328 -1 6 1160 8867 165 36 37 chr4 75446000 75446942 -80183178 + ORR1B1-int LTR MaLR 2 946 -1017 6 1160 2785 86 29 12 chr4 75446942 75447356 -80182764 - BGLII LTR ERVK 0 421 1 6 1160 8867 174 35 68 chr4 75447356 75448468 -80181652 + ORR1B1-int LTR MaLR 777 1792 0 6 1160 1993 146 30 73 chr4 75448475 75448845 -80181275 + ORR1B1 LTR MaLR 41 394 0 6 1160 496 333 129 17 chr4 75449363 75449665 -80180455 + MER2 DNA MER2_type 10 345 0 6 1160 365 364 25 0 chr4 75450162 75450324 -80179796 + L1MC4a LINE L1 5741 5906 -1976 6 1160 1013 299 79 31 chr4 75450898 75451253 -80178867 - MTEa LTR MaLR 0 379 8 6 1160 1272 285 47 14 chr4 75452131 75452509 -80177611 - MTD LTR MaLR -15 404 20 6 1160 978 115 11 6 chr4 75452785 75452960 -80177160 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 1160 358 340 94 51 chr4 75452960 75453214 -80176906 + HAL1-3A_ME LINE L1 2304 2568 -290 6 1160 429 19 0 0 chr4 75453215 75453262 -80176858 + (GAAA)n Simple_repeat Simple_repeat 1 47 0 6 1160 885 19 0 0 chr4 75453262 75453365 -80176755 + (GAGAA)n Simple_repeat Simple_repeat 2 104 0 6 1160 602 290 165 28 chr4 75453902 75454157 -80175963 + MER21B LTR ERV1 380 669 -194 6 1160 251 208 19 19 chr4 75454835 75454889 -80175231 - RMER15 LTR ERVL -63 512 459 6 1160 264 281 91 28 chr4 75457250 75457426 -80172694 - Charlie4a DNA MER1_type -33 475 289 6 1160 2455 94 52 50 chr4 75458229 75458632 -80171488 + RLTR9E LTR ERVK 1 404 -5 6 1160 25 0 0 0 chr4 75459386 75459411 -80170709 + AT_rich Low_complexity Low_complexity 1 25 0 6 1160 363 271 26 32 chr4 75459466 75459622 -80170498 + Lx8 LINE L1 5115 5302 -578 6 1160 830 299 79 17 chr4 75459622 75459998 -80170122 + MTD LTR MaLR 1 407 0 6 1160 3062 269 49 78 chr4 75459998 75461185 -80168935 + MTD-int LTR MaLR 1 1152 -106 6 1160 229 328 0 17 chr4 75461186 75461304 -80168816 - Lx7 LINE L1 -18 7678 7563 6 1160 954 287 6 22 chr4 75461352 75461666 -80168454 - Lx7 LINE L1 -317 7379 7071 6 1160 295 256 70 0 chr4 75461666 75461752 -80168368 - MTC-int LTR MaLR -21 1237 1146 6 1160 1095 231 4 0 chr4 75461754 75461996 -80168124 - Lx7 LINE L1 -625 7071 6829 6 1160 451 260 53 8 chr4 75461997 75462129 -80167991 + MTD-int LTR MaLR 1117 1254 -4 6 1160 1184 301 71 10 chr4 75462134 75462527 -80167593 + MTD LTR MaLR 1 417 -2 6 1160 436 259 15 5 chr4 75462528 75462677 -80167443 + Lx8 LINE L1 5329 5497 -806 6 1160 1054 205 108 46 chr4 75462697 75462969 -80167151 - RLTR15 LTR ERVK -17 342 50 6 1160 855 61 0 0 chr4 75462969 75463083 -80167037 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 6 1160 1054 205 108 46 chr4 75463083 75463117 -80167003 - RLTR15 LTR ERVK -310 49 17 6 1160 1030 280 30 34 chr4 75463147 75463643 -80166477 + Lx8 LINE L1 5523 6016 -1628 6 1160 286 225 74 125 chr4 75463802 75463939 -80166181 + ORR1D2 LTR MaLR 35 164 -195 6 1160 1561 111 3 85 chr4 75464000 75464295 -80165825 + L1_Mus2 LINE L1 6296 6566 0 6 1160 627 254 26 63 chr4 75464339 75464528 -80165592 + ORR1D2 LTR MaLR 142 323 -47 6 1160 495 45 0 0 chr4 75464560 75464626 -80165494 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1160 234 0 0 0 chr4 75466134 75466160 -80163960 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1160 211 286 32 0 chr4 75467222 75467285 -80162835 - ID4 SINE ID -1 82 18 6 1160 180 0 0 0 chr4 75467340 75467360 -80162760 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1160 5731 129 36 54 chr4 75467465 75468441 -80161679 + RMER17B LTR ERVK 1 958 0 6 1160 2215 96 9 61 chr4 75468788 75469133 -80160987 + ORR1A2 LTR MaLR 1 327 0 6 1160 186 333 28 42 chr4 75469364 75469436 -80160684 + MIR SINE MIR 70 140 -68 6 1160 262 328 101 31 chr4 75469736 75469865 -80160255 + LTR53 LTR ERVL 213 350 -169 6 1160 834 285 146 22 chr4 75469907 75470223 -80159897 + MTEb LTR MaLR 25 379 0 6 1160 2497 301 77 115 chr4 75470223 75471866 -80158254 + MTEb-int LTR MaLR 1 1580 0 6 1160 931 242 140 55 chr4 75471866 75472101 -80158019 + MTEb LTR MaLR 1 275 -104 6 1160 569 52 13 0 chr4 75472101 75472178 -80157942 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1160 931 242 140 55 chr4 75472178 75472270 -80157850 + MTEb LTR MaLR 276 356 -23 6 1160 28 48 0 0 chr4 75472501 75472543 -80157577 + AT_rich Low_complexity Low_complexity 1 42 0 6 1160 507 33 0 0 chr4 75472858 75472919 -80157201 + (CCA)n Simple_repeat Simple_repeat 1 61 0 6 1160 22 35 0 0 chr4 75474995 75475024 -80155096 + AT_rich Low_complexity Low_complexity 1 29 0 6 1160 1056 316 60 5 chr4 75475168 75475479 -80154641 + RMER5 LTR ERV1 44 372 -162 6 1160 186 43 0 0 chr4 75475479 75475502 -80154618 + (TTG)n Simple_repeat Simple_repeat 3 25 0 6 1160 1056 316 60 5 chr4 75475502 75475591 -80154529 + RMER5 LTR ERV1 373 465 -69 6 1160 2759 151 4 13 chr4 75475662 75476118 -80154002 + RLTR17 LTR ERVK 1 452 -240 6 1160 432 164 8 33 chr4 75476124 75476244 -80153876 - L1Md_A LINE L1 0 6582 6466 6 1160 554 103 0 11 chr4 75476272 75476360 -80153760 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1160 3414 50 13 16 chr4 75476396 75476844 -80153276 + MT2_Mm LTR ERVL 1 447 -46 6 1160 1506 173 8 8 chr4 75476855 75477111 -80153009 + RLTR17 LTR ERVK 437 692 0 6 1160 30 0 0 0 chr4 75477117 75477147 -80152973 + AT_rich Low_complexity Low_complexity 1 30 0 6 1160 205 273 36 0 chr4 75477359 75477414 -80152706 + L2a LINE L2 3362 3418 -8 6 1160 255 272 21 52 chr4 75477419 75477516 -80152604 - MLT1A1 LTR MaLR -9 399 306 6 1160 2746 50 0 3 chr4 75477538 75477881 -80152239 + MTA_Mm LTR MaLR 1 342 -54 6 1160 228 35 0 0 chr4 75477885 75477914 -80152206 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1160 189 333 0 13 chr4 75478872 75478948 -80151172 - L2a LINE L2 -5 3421 3347 6 1160 433 335 160 20 chr4 75478967 75479412 -80150708 - L2a LINE L2 -499 2920 2414 6 1160 201 260 169 0 chr4 75479436 75479513 -80150607 - L2a LINE L2 -1 3425 3336 6 1160 653 352 103 32 chr4 75479675 75480053 -80150067 + MTD LTR MaLR 1 405 -14 6 1160 711 0 0 0 chr4 75482065 75482144 -80147976 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 1160 1178 216 58 53 chr4 75485978 75486482 -80143638 + RMER15 LTR ERVL 13 574 -1 6 1160 185 262 47 59 chr4 75486892 75486977 -80143143 - L3 LINE CR1 -3509 980 897 6 1160 22 0 0 0 chr4 75487342 75487364 -80142756 + AT_rich Low_complexity Low_complexity 1 22 0 6 1160 243 312 12 12 chr4 75488195 75488276 -80141844 - ID4 SINE ID -2 81 1 6 1160 22 0 0 0 chr4 75488947 75488969 -80141151 + AT_rich Low_complexity Low_complexity 1 22 0 6 1160 3007 26 0 14 chr4 75489728 75490079 -80140041 - ORR1A0 LTR MaLR 0 346 1 6 1160 443 158 66 47 chr4 75490472 75490578 -80139542 - B1_Mur4 SINE Alu 0 150 43 6 1160 232 167 0 0 chr4 75490600 75490648 -80139472 + CT-rich Low_complexity Low_complexity 133 180 0 6 1160 336 200 0 32 chr4 75490648 75490710 -80139410 - B1_Mur4 SINE Alu -90 60 1 6 1160 255 264 40 40 chr4 75490710 75490723 -80139397 - B4 SINE B4 -148 144 70 6 1160 414 0 0 0 chr4 75490909 75490955 -80139165 + (ATAAG)n Simple_repeat Simple_repeat 3 48 0 6 1160 1542 169 83 29 chr4 75492611 75492959 -80137161 - ORR1D2 LTR MaLR -1 369 3 6 1160 229 0 83 0 chr4 75493447 75493483 -80136637 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1160 1128 236 108 68 chr4 75493648 75494130 -80135990 - RLTR16 LTR ERVK -4 501 1 6 1160 1795 276 103 22 chr4 75494297 75495383 -80134737 - Lx7 LINE L1 -1797 5899 4687 6 1160 476 320 60 32 chr4 75495383 75495635 -80134485 + RMER15 LTR ERVL 317 575 0 6 1160 296 271 101 18 chr4 75497173 75497282 -80132838 - MER5A DNA MER1_type -28 161 44 6 2 452 315 91 44 chr4 75497397 75497809 -80132311 - MLT1C LTR MaLR -8 497 13 6 1161 577 285 64 122 chr4 75497915 75498122 -80131998 + B4 SINE B4 5 215 -77 6 1161 216 0 0 0 chr4 75498122 75498146 -80131974 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1161 577 285 64 122 chr4 75498146 75498234 -80131886 + B4 SINE B4 216 283 -9 6 1161 2092 195 105 13 chr4 75499451 75499998 -80130122 - Lx3C LINE L1 0 7000 6424 6 1161 236 264 151 0 chr4 75500290 75500396 -80129724 - MIRb SINE MIR -15 253 132 1 1161 270 0 0 0 chr4 75501554 75501584 -80128536 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1161 284 362 32 16 chr4 75502412 75502600 -80127520 - ORSL-2b DNA Tip100 -45 463 273 3 1161 245 216 147 43 chr4 75502672 75502788 -80127332 - ORSL-2b DNA Tip100 -356 152 25 3 1161 268 357 62 25 chr4 75503256 75503417 -80126703 + MIR SINE MIR 90 256 -6 4 1161 22 0 0 0 chr4 75504879 75504901 -80125219 + AT_rich Low_complexity Low_complexity 1 22 0 5 1161 186 43 0 0 chr4 75505599 75505622 -80124498 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1161 324 0 0 0 chr4 75506077 75506113 -80124007 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1161 366 324 72 14 chr4 75506122 75506260 -80123860 - B3A SINE B2 -50 148 3 8 1161 231 370 69 11 chr4 75507596 75507771 -80122349 - MIRb SINE MIR -69 199 15 9 1161 288 0 0 0 chr4 75508027 75508059 -80122061 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1161 361 147 21 21 chr4 75508288 75508385 -80121735 + Lx9 LINE L1 7526 7622 -22 1 1161 1222 84 16 78 chr4 75508569 75508762 -80121358 + B2_Mm2 SINE B2 1 181 -14 1 1161 689 63 0 10 chr4 75508763 75508859 -80121261 + (GGAGAA)n Simple_repeat Simple_repeat 4 98 0 1 1161 377 307 104 59 chr4 75509464 75509706 -80120414 - HAL1 LINE L1 -1394 1113 859 1 1161 1832 171 114 79 chr4 75509706 75510137 -80119983 - RLTR41 LTR ERV1 0 446 1 1 1161 377 307 104 59 chr4 75510137 75510181 -80119939 - HAL1 LINE L1 -1649 858 814 1 1161 369 0 0 0 chr4 75510240 75510281 -80119839 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1161 304 255 20 20 chr4 75510281 75510381 -80119739 - L1P5 LINE L1 -381 5775 5676 1 1161 426 20 0 0 chr4 75511009 75511060 -80119060 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1161 234 0 0 0 chr4 75511378 75511404 -80118716 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1161 901 174 57 23 chr4 75512409 75512640 -80117480 - ORR1B1 LTR MaLR 0 394 85 2 1161 231 372 33 13 chr4 75514094 75514211 -80115909 - MIRb SINE MIR -70 198 80 2 1161 3446 45 28 7 chr4 75514211 75514638 -80115482 + RLTR10C LTR ERVK 1 436 0 2 1161 231 372 33 13 chr4 75514638 75514670 -80115450 - MIRb SINE MIR -189 79 47 2 1161 189 94 0 0 chr4 75515115 75515147 -80114973 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 2 1161 214 299 26 0 chr4 75515293 75515370 -80114750 - MIRb SINE MIR -147 121 43 2 1161 412 376 69 89 chr4 75517714 75518064 -80112056 - ORR1E LTR MaLR -16 343 1 2 1161 7289 91 20 3 chr4 75518204 75519402 -80110718 - L1Md_F2 LINE L1 -12 6570 5283 2 1161 7657 74 12 0 chr4 75519404 75520483 -80109637 + L1Md_F2 LINE L1 4226 5317 -566 2 1161 221 75 0 24 chr4 75521103 75521144 -80108976 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1161 1201 55 0 0 chr4 75521146 75521292 -80108828 - B1_Mm SINE Alu 0 147 2 2 1161 471 18 0 0 chr4 75522130 75522186 -80107934 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1161 407 52 17 0 chr4 75522521 75522579 -80107541 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1161 400 325 75 0 chr4 75522580 75522700 -80107420 - RSINE1 SINE B4 -25 140 12 3 1161 584 309 0 7 chr4 75522794 75522946 -80107174 + ID_B1 SINE B4 70 216 -8 3 1161 2560 27 7 0 chr4 75524170 75524469 -80105651 + L1Md_F2 LINE L1 6268 6568 -14 3 1161 357 299 75 40 chr4 75525745 75525919 -80104201 + L1MC1 LINE L1 4930 5109 -1037 3 1161 264 311 72 0 chr4 75526021 75526188 -80103932 + L1MC1 LINE L1 5255 5433 -900 3 1161 1406 170 0 0 chr4 75526191 75526420 -80103700 - ORR1A4 LTR MaLR 0 329 101 3 1161 1089 290 104 28 chr4 75526421 75527173 -80102947 + L1MC1 LINE L1 5499 6307 -26 3 1161 264 298 52 41 chr4 75527309 75527600 -80102520 - L1MC LINE L1 -2160 3986 3693 3 1161 698 306 43 25 chr4 75527730 75528012 -80102108 - Lx8 LINE L1 -124 7349 7063 3 1161 1763 171 113 3 chr4 75528126 75528490 -80101630 + MTC LTR MaLR 18 421 0 3 1161 2780 199 122 41 chr4 75528490 75528755 -80101365 + MTC-int LTR MaLR 1 246 -1012 3 1161 2081 138 114 72 chr4 75528755 75529183 -80100937 + RLTR41 LTR ERV1 1 446 0 3 1161 2780 209 127 42 chr4 75529183 75529684 -80100436 + MTC-int LTR MaLR 247 1125 -455 3 1161 2173 198 35 5 chr4 75529684 75530085 -80100035 + MTC LTR MaLR 3 415 -6 3 1161 1008 273 89 58 chr4 75530086 75530623 -80099497 - Lx8 LINE L1 -507 6966 6413 3 1161 459 290 112 53 chr4 75530644 75530996 -80099124 - L1MC LINE L1 -2459 3687 3313 3 1161 27 0 0 0 chr4 75531048 75531075 -80099045 + AT_rich Low_complexity Low_complexity 1 27 0 4 1161 7806 134 39 11 chr4 75531084 75531150 -80098970 - Lx3B LINE L1 -3 6970 6904 4 1161 429 20 0 0 chr4 75531150 75531200 -80098920 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1161 7806 134 39 11 chr4 75531200 75532124 -80097996 - Lx3B LINE L1 -70 6903 5938 4 1161 3869 166 40 9 chr4 75532124 75532793 -80097327 - RLTR17 LTR ERVK 0 692 3 4 1161 7806 134 39 11 chr4 75532793 75533119 -80097001 - Lx3B LINE L1 -1036 5937 5617 4 1161 1173 278 114 9 chr4 75533118 75533800 -80096320 - L1MC LINE L1 -2936 3210 2457 3 1161 21 0 0 0 chr4 75534120 75534141 -80095979 + AT_rich Low_complexity Low_complexity 1 21 0 4 1161 935 258 82 26 chr4 75534226 75534529 -80095591 + MTD LTR MaLR 100 419 0 4 1161 215 333 28 15 chr4 75534755 75534855 -80095265 - MIRc SINE MIR -105 163 64 4 1161 2308 66 23 0 chr4 75535131 75535435 -80094685 + L1_Mus1 LINE L1 6257 6567 0 4 1161 2760 169 6 2 chr4 75537161 75537646 -80092474 + Lx2B LINE L1 6101 6587 -413 4 1161 690 189 80 7 chr4 75537646 75537783 -80092337 + B1_Mur4 SINE Alu 3 150 0 4 1161 458 82 0 0 chr4 75537905 75537966 -80092154 + B2_Mm2 SINE B2 1 61 -134 5 1161 213 39 0 0 chr4 75538294 75538320 -80091800 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1161 521 319 115 29 chr4 75538320 75538633 -80091487 - MLT1A0 LTR MaLR -17 348 9 5 1161 420 333 50 44 chr4 75538728 75538750 -80091370 + ID_B1 SINE B4 64 224 0 5 1161 483 291 29 29 chr4 75538750 75538888 -80091232 + B1F1 SINE Alu 12 149 0 5 1161 646 117 0 18 chr4 75538891 75539004 -80091116 + (GGGGA)n Simple_repeat Simple_repeat 5 115 0 5 1161 241 211 0 55 chr4 75539024 75539079 -80091041 + ID SINE ID 16 67 -157 5 1161 1494 236 111 8 chr4 75539264 75539644 -80090476 + MTD LTR MaLR 1 419 0 5 1161 210 37 0 0 chr4 75539704 75539731 -80090389 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1161 248 269 8 32 chr4 75539901 75539954 -80090166 + A-rich Low_complexity Low_complexity 1 49 0 5 1161 225 65 0 0 chr4 75539954 75539985 -80090135 + (CAT)n Simple_repeat Simple_repeat 2 32 0 6 1161 248 269 8 32 chr4 75539985 75540054 -80090066 + A-rich Low_complexity Low_complexity 50 119 0 6 1161 326 318 18 9 chr4 75540362 75540473 -80089647 - MIRb SINE MIR -69 199 88 6 1161 264 227 12 62 chr4 75541235 75541315 -80088805 - MIR SINE MIR -1 261 186 6 1161 291 261 34 25 chr4 75541860 75541978 -80088142 + CT-rich Low_complexity Low_complexity 4 122 0 6 1161 836 194 18 0 chr4 75542086 75542251 -80087869 + Lx5 LINE L1 6477 6644 -406 6 1161 377 291 152 35 chr4 75542292 75542688 -80087432 - L1_Rod LINE L1 -3826 2021 1580 6 1161 7203 78 36 9 chr4 75542688 75543684 -80086436 + RLTR13D5 LTR ERVK 1 1023 0 6 1161 266 132 0 36 chr4 75543691 75543746 -80086374 - RMER1B Other Other -2 1064 1012 6 1161 230 268 44 89 chr4 75543746 75543836 -80086284 - RMER4B LTR ERVK -38 547 462 6 1161 1725 227 42 0 chr4 75543838 75544217 -80085903 - RMER1B Other Other -130 936 542 7 1161 272 310 19 45 chr4 75544245 75544427 -80085693 - RMER1A Other Other -678 352 8 7 1161 282 346 19 4 chr4 75544430 75544688 -80085432 - L1_Rod LINE L1 -4263 1584 1323 6 1161 5165 230 101 26 chr4 75544771 75546270 -80083850 - Lx7 LINE L1 -17 7679 6069 7 1161 2259 208 44 20 chr4 75546272 75546972 -80083148 + Lx7 LINE L1 5344 6053 -1643 7 1161 492 279 108 18 chr4 75546978 75547188 -80082932 - MTC LTR MaLR -210 209 1 7 1161 480 35 0 0 chr4 75549270 75549328 -80080792 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1161 324 0 0 0 chr4 75549571 75549607 -80080513 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1161 331 343 173 16 chr4 75549890 75550139 -80079981 + LTR52 LTR ERVL 35 322 -99 7 1161 1105 199 132 40 chr4 75550788 75551092 -80079028 - IAPEY3_LTR LTR ERVK 0 332 1 7 1161 477 290 119 53 chr4 75551109 75551244 -80078876 - L1MA4A LINE L1 -375 5928 5793 7 1161 324 0 0 0 chr4 75551244 75551280 -80078840 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1161 477 290 119 53 chr4 75551280 75551614 -80078506 - L1MA4A LINE L1 -511 5792 5428 7 1161 25 0 0 0 chr4 75551688 75551713 -80078407 + AT_rich Low_complexity Low_complexity 1 25 0 7 1161 393 22 0 0 chr4 75551841 75551887 -80078233 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1161 546 360 5 48 chr4 75551928 75552135 -80077985 - B4A SINE B4 -94 198 1 8 1161 247 182 0 0 chr4 75552139 75552183 -80077937 - L1_Mur3 LINE L1 -480 5400 5357 8 1161 22 0 0 0 chr4 75552190 75552212 -80077908 + AT_rich Low_complexity Low_complexity 1 22 0 8 1161 585 42 0 0 chr4 75552225 75552297 -80077823 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 1161 327 49 0 0 chr4 75552306 75552347 -80077773 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1161 321 268 3 1 chr4 75552379 75552502 -80077618 - L1MA4A LINE L1 -1289 4851 4728 7 1161 422 288 19 6 chr4 75552640 75552801 -80077319 - L1_Rod LINE L1 -623 5224 5062 8 1161 382 294 54 7 chr4 75552943 75553090 -80077030 - L1_Mur2 LINE L1 -2049 3828 3675 8 1161 333 82 0 0 chr4 75553128 75553177 -80076943 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1161 243 0 0 0 chr4 75553181 75553208 -80076912 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1161 353 296 98 37 chr4 75553218 75553432 -80076688 - L1MA4A LINE L1 -2480 3663 3437 7 1161 216 0 0 0 chr4 75553485 75553509 -80076611 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1161 1212 41 0 0 chr4 75553511 75553656 -80076464 - B1_Mm SINE Alu -1 146 2 9 1161 450 270 105 6 chr4 75553660 75553844 -80076276 - L1MA4A LINE L1 -2805 3338 3131 7 1161 186 43 0 0 chr4 75553844 75553867 -80076253 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 9 1161 450 270 105 6 chr4 75553867 75554043 -80076077 - L1MA4A LINE L1 -3013 3130 2943 7 1161 1637 316 65 16 chr4 75555437 75556302 -80073818 - Lx8 LINE L1 -5 7468 6562 9 1161 1897 148 12 68 chr4 75556320 75556660 -80073460 + ORR1A4 LTR MaLR 9 329 0 9 1161 792 330 42 12 chr4 75556660 75556991 -80073129 - Lx8 LINE L1 -931 6542 6202 9 1161 417 39 0 0 chr4 75556996 75557047 -80073073 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 1161 360 292 121 51 chr4 75557056 75557471 -80072649 - Lx7 LINE L1 -1533 6163 5720 9 1161 615 84 0 0 chr4 75557482 75557565 -80072555 + RMER17C LTR ERVK 1 83 -327 9 1161 6039 198 56 90 chr4 75557565 75559871 -80070249 + Lx LINE L1 3668 5896 -758 9 1161 5229 118 31 36 chr4 75559871 75560764 -80069356 + RMER17D LTR ERVK 1 889 0 9 1161 3683 127 0 44 chr4 75560764 75561052 -80069068 + Lx LINE L1 5897 6167 -487 9 1161 1273 162 21 4 chr4 75561055 75561296 -80068824 + Lx LINE L1 6406 6650 -4 9 1161 1104 215 19 116 chr4 75561306 75561685 -80068435 + RMER17C LTR ERVK 69 410 0 1 1161 1476 246 117 153 chr4 75561722 75562112 -80068008 + L1_Mur3 LINE L1 3730 4124 -1751 1 1161 615 217 0 52 chr4 75562112 75562248 -80067872 + B1_Mur3 SINE Alu 20 148 -1 1 1161 462 36 0 0 chr4 75562253 75562309 -80067811 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 1 1161 1476 246 117 153 chr4 75562309 75562781 -80067339 + L1_Mur3 LINE L1 4130 4695 -1185 1 1161 189 308 93 28 chr4 75567039 75567146 -80062974 - MIR SINE MIR -39 223 110 1 1161 736 267 56 133 chr4 75567215 75567562 -80062558 - RLTR23 LTR ERV1 0 430 116 1 1161 183 42 0 0 chr4 75567562 75567586 -80062534 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1161 245 0 86 0 chr4 75567591 75567626 -80062494 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1161 736 267 56 133 chr4 75567626 75567738 -80062382 - RLTR23 LTR ERV1 -320 110 2 1 1161 278 148 19 0 chr4 75567758 75567812 -80062308 + CT-rich Low_complexity Low_complexity 2 56 0 1 1161 1458 280 97 30 chr4 75567978 75569324 -80060796 - L1MB2 LINE L1 -266 5905 4477 1 1161 8480 23 0 0 chr4 75569381 75570676 -80059444 - L1Md_T LINE L1 0 6582 5288 1 1161 248 0 0 30 chr4 75570719 75570752 -80059368 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1 1161 37935 30 0 0 chr4 75570894 75577420 -80052700 - L1Md_T LINE L1 -15 6570 1 1 1161 4189 141 191 16 chr4 75577421 75578321 -80051799 - L1_Mur1 LINE L1 -2261 3625 2568 1 1161 451 242 59 76 chr4 75578516 75578831 -80051289 - L1_Mur1 LINE L1 -6168 816 438 1 1161 599 302 82 6 chr4 75578838 75579008 -80051112 + B3 SINE B2 29 211 -5 1 1161 814 248 9 14 chr4 75579085 75579302 -80050818 + Lx7 LINE L1 7477 7692 -4 1 1161 431 273 162 16 chr4 75579365 75579618 -80050502 + L1_Rod LINE L1 1979 2268 -3579 1 1161 207 225 0 0 chr4 75579629 75579669 -80050451 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1161 1734 223 53 3 chr4 75579669 75580047 -80050073 - Lx7 LINE L1 -867 6829 6433 1 1161 1811 241 92 29 chr4 75580052 75580376 -80049744 - Lx7 LINE L1 -1460 6236 5880 1 1161 207 0 0 0 chr4 75580376 75580399 -80049721 + (TGAG)n Simple_repeat Simple_repeat 4 26 0 1 1161 11051 184 61 19 chr4 75580399 75581214 -80048906 - Lx7 LINE L1 -4 5876 5051 1 1161 216 67 0 0 chr4 75581214 75581244 -80048876 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1161 11051 184 61 19 chr4 75581244 75582972 -80047148 - Lx7 LINE L1 -830 5050 3227 1 1161 3794 87 26 0 chr4 75582968 75583506 -80046614 + L1_Mur1 LINE L1 3759 4310 -1576 1 1161 1090 176 145 55 chr4 75583507 75583886 -80046234 - Lx7 LINE L1 -2664 3216 2804 1 1161 473 287 161 16 chr4 75584019 75584475 -80045645 - Lx7 LINE L1 -4160 1687 1176 1 1161 1004 44 0 0 chr4 75585594 75585729 -80044391 + L1Md_T LINE L1 6447 6581 -1 1 1161 363 141 0 0 chr4 75588523 75588601 -80041519 + (T)n Simple_repeat Simple_repeat 1 78 0 1 1161 564 15 0 0 chr4 75588854 75588919 -80041201 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1161 21 0 0 0 chr4 75589797 75589818 -80040302 + AT_rich Low_complexity Low_complexity 1 21 0 1 1161 249 109 0 0 chr4 75590686 75590732 -80039388 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1161 739 145 6 73 chr4 75591171 75591349 -80038771 + Lx LINE L1 6485 6650 -4 1 1161 1923 165 47 3 chr4 75591356 75591696 -80038424 + MTC LTR MaLR 67 421 0 1 1161 477 0 0 0 chr4 75592595 75592648 -80037472 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1161 333 0 0 0 chr4 75592648 75592684 -80037436 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1161 7509 42 4 0 chr4 75593707 75594612 -80035508 - L1Md_F2 LINE L1 -12 6570 5662 1 1161 480 35 0 0 chr4 75596266 75596324 -80033796 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1161 477 0 0 0 chr4 75596980 75597033 -80033087 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1161 1689 203 69 54 chr4 75597330 75597733 -80032387 + MTD LTR MaLR 1 405 -14 1 1161 22 0 0 0 chr4 75600361 75600383 -80029737 + AT_rich Low_complexity Low_complexity 1 22 0 1 1161 596 289 59 7 chr4 75601751 75601904 -80028216 + B4A SINE B4 125 285 -7 1 1161 627 149 0 0 chr4 75602677 75602784 -80027336 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 1 1161 591 136 29 0 chr4 75602791 75602894 -80027226 + GA-rich Low_complexity Low_complexity 2 107 0 1 1161 474 250 93 0 chr4 75603670 75603778 -80026342 + ID_B1 SINE B4 99 216 -8 1 1161 416 252 130 32 chr4 75603778 75603790 -80026330 + B1F SINE Alu 18 149 0 1 1161 27 29 0 0 chr4 75603938 75603972 -80026148 + AT_rich Low_complexity Low_complexity 1 34 0 1 1161 346 292 138 66 chr4 75604790 75605024 -80025096 - MTD LTR MaLR -193 226 1 1 1161 25 0 0 0 chr4 75605513 75605538 -80024582 + AT_rich Low_complexity Low_complexity 1 25 0 1 1161 467 107 0 74 chr4 75606680 75606760 -80023360 - B1_Mus2 SINE Alu -1 146 73 1 1161 2955 160 66 19 chr4 75606760 75607104 -80023016 - RLTR20D LTR ERVK 0 568 209 1 1161 489 17 0 0 chr4 75607104 75607162 -80022958 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1161 2955 160 66 19 chr4 75607162 75607359 -80022761 - RLTR20D LTR ERVK -360 208 1 1 1161 414 286 0 0 chr4 75607359 75607438 -80022682 - B1_Mur3 SINE Alu -69 80 2 1 1161 204 67 0 0 chr4 75609492 75609522 -80020598 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1161 3520 169 51 42 chr4 75609578 75610290 -80019830 + RMER6D LTR ERVK 3 720 0 1 1161 599 260 13 20 chr4 75610968 75611117 -80019003 + B1_Mur3 SINE Alu 2 149 0 1 1161 323 312 61 23 chr4 75611128 75611259 -80018861 - MER5A DNA MER1_type -50 139 4 1 1161 279 0 0 0 chr4 75613149 75613180 -80016940 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1161 490 257 50 29 chr4 75613603 75613743 -80016377 - B4 SINE B4 -101 191 49 1 1161 233 321 25 13 chr4 75614364 75614443 -80015677 + MER5A1 DNA MER1_type 22 101 -65 1 1161 26 50 0 0 chr4 75615125 75615165 -80014955 + AT_rich Low_complexity Low_complexity 1 40 0 1 1161 1074 43 57 0 chr4 75618071 75618211 -80011909 - B1_Mur4 SINE Alu 0 150 3 1 1161 216 0 0 0 chr4 75620056 75620080 -80010040 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1161 675 306 38 13 chr4 75621650 75621888 -80008232 - MARNA DNA Mariner -9 577 334 1 1161 369 353 53 5 chr4 75622094 75622302 -80007818 + MER20 DNA MER1_type 2 219 0 1 1161 401 243 105 19 chr4 75622564 75622669 -80007451 - B1_Mur1 SINE Alu -1 148 35 1 1161 230 314 120 28 chr4 75622575 75622683 -80007437 - MT2B LTR ERVL -316 285 168 1 1161 897 108 164 29 chr4 75623889 75624060 -80006060 + B2_Mm2 SINE B2 1 194 -1 1 1161 231 286 56 113 chr4 75624102 75624244 -80005876 + RMER12 LTR ERVK 723 856 -466 1 1161 797 294 40 103 chr4 75624228 75624528 -80005592 - B4 SINE B4 0 292 12 1 1161 644 105 32 13 chr4 75624752 75624906 -80005214 + (TA)n Simple_repeat Simple_repeat 2 158 0 1 1161 251 326 69 42 chr4 75625895 75626039 -80004081 - RSINE1 SINE B4 -16 149 2 1 1161 22 0 0 0 chr4 75627315 75627337 -80002783 + AT_rich Low_complexity Low_complexity 1 22 0 1 1162 227 294 52 60 chr4 75629369 75629485 -80000635 + Tigger7 DNA MER2_type 530 644 -1847 1 1162 628 215 98 0 chr4 75630733 75630947 -79999173 - Lx9 LINE L1 -6 7638 7404 1 1162 444 169 24 0 chr4 75630981 75631064 -79999056 + Lx9 LINE L1 6975 7059 -585 1 1162 4022 176 105 16 chr4 75631064 75632007 -79998113 + ORR1A3-int LTR MaLR 389 1402 -561 1 1162 229 59 59 0 chr4 75632004 75632038 -79998082 + ORR1A3 LTR MaLR 283 318 -8 1 1162 683 269 11 0 chr4 75632065 75632247 -79997873 + Lx8 LINE L1 3910 4093 -1787 1 1162 2474 253 99 19 chr4 75632250 75632695 -79997425 + Lx8 LINE L1 4881 5333 -547 1 1162 324 0 0 0 chr4 75632695 75632731 -79997389 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1162 2474 253 99 19 chr4 75632731 75633144 -79996976 + Lx8 LINE L1 5334 5807 -73 1 1162 2154 322 91 20 chr4 75633160 75634166 -79995954 + Lx7 LINE L1 6421 7471 -2 1 1162 488 229 54 78 chr4 75634194 75634354 -79995766 + B1_Mur1 SINE Alu 5 149 0 1 1162 202 139 23 0 chr4 75634363 75634406 -79995714 + A-rich Low_complexity Low_complexity 5 48 0 1 1162 423 285 97 47 chr4 75634471 75634799 -79995321 + Lx8 LINE L1 5748 6078 -1395 1 1162 274 229 16 16 chr4 75634902 75634964 -79995156 + RMER1C Other Other 1136 1197 -145 1 1162 491 299 85 114 chr4 75639529 75639835 -79990285 + MTE2a LTR MaLR 1 297 -82 1 1162 308 354 111 41 chr4 75641509 75641680 -79988440 - Tigger16b DNA Tigger -114 223 41 1 1162 846 113 0 0 chr4 75643346 75643497 -79986623 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1162 252 274 40 59 chr4 75643799 75643900 -79986220 - PB1D9 SINE Alu 0 120 22 1 1162 655 236 80 53 chr4 75643936 75644236 -79985884 - L1_Rod LINE L1 -6498 674 367 1 1162 252 302 90 41 chr4 75645303 75645448 -79984672 + L2 LINE L2 2807 2958 -461 1 1162 248 321 49 0 chr4 75646028 75646109 -79984011 + L3 LINE CR1 4279 4363 -126 1 1162 1178 54 0 0 chr4 75646647 75646794 -79983326 - B1_Mus1 SINE Alu 0 148 2 1 1162 1428 171 88 18 chr4 75647615 75647900 -79982220 + Lx3C LINE L1 6669 6973 -3 1 1162 24 0 0 0 chr4 75647902 75647926 -79982194 + AT_rich Low_complexity Low_complexity 1 24 0 1 1162 367 234 111 9 chr4 75648280 75648388 -79981732 - PB1D9 SINE Alu -1 119 1 1 1162 686 208 128 21 chr4 75648781 75648968 -79981152 + B3 SINE B2 2 208 -8 1 1162 632 250 7 26 chr4 75649184 75649336 -79980784 - B1_Mur2 SINE Alu 0 149 1 1 1162 217 241 0 0 chr4 75650355 75650413 -79979707 + (ATAAG)n Simple_repeat Simple_repeat 5 62 0 1 1162 342 0 0 0 chr4 75650645 75650683 -79979437 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1162 21 0 0 0 chr4 75652264 75652285 -79977835 + AT_rich Low_complexity Low_complexity 1 21 0 1 1162 685 251 33 32 chr4 75652491 75652675 -79977445 - B3A SINE B2 -5 190 6 1 1162 414 0 0 0 chr4 75654207 75654253 -79975867 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1162 579 295 104 63 chr4 75654820 75655088 -79975032 - B4A SINE B4 0 292 14 1 1162 330 87 0 0 chr4 75656214 75656260 -79973860 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 1162 461 277 163 0 chr4 75656794 75656935 -79973185 - RSINE1 SINE B4 0 165 2 1 1162 229 146 62 0 chr4 75657015 75657063 -79973057 + A-rich Low_complexity Low_complexity 1 51 0 1 1162 213 132 0 0 chr4 75659136 75659174 -79970946 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1162 22 70 0 0 chr4 75661477 75661520 -79968600 + AT_rich Low_complexity Low_complexity 1 43 0 2 1162 576 0 0 0 chr4 75661744 75661808 -79968312 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 2 1162 26 0 0 0 chr4 75663435 75663461 -79966659 + AT_rich Low_complexity Low_complexity 1 26 0 2 1162 263 292 44 22 chr4 75665064 75665155 -79964965 + MER94 DNA AcHobo 37 129 -5 2 1162 554 51 13 0 chr4 75665606 75665684 -79964436 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 1162 301 270 0 0 chr4 75665687 75665750 -79964370 - RSINE1 SINE B4 -98 67 5 2 1162 300 148 0 0 chr4 75668676 75668737 -79961383 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1162 30 0 0 0 chr4 75668976 75669006 -79961114 + AT_rich Low_complexity Low_complexity 1 30 0 2 1162 248 178 0 11 chr4 75670749 75670800 -79959320 + PB1D10 SINE Alu 66 138 -11 2 1162 264 30 0 0 chr4 75670800 75670833 -79959287 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1162 552 100 0 0 chr4 75670892 75670972 -79959148 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 2 1162 207 0 0 0 chr4 75670978 75671001 -79959119 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1162 1159 44 0 0 chr4 75671001 75671138 -79958982 - B1_Mus2 SINE Alu -9 138 2 2 1162 527 282 34 83 chr4 75671173 75671378 -79958742 + B3 SINE B2 1 195 0 2 1162 324 102 0 0 chr4 75671731 75671780 -79958340 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 1162 23 0 0 0 chr4 75672908 75672931 -79957189 + AT_rich Low_complexity Low_complexity 1 23 0 2 1162 1242 87 0 0 chr4 75673002 75673175 -79956945 + (GAAA)n Simple_repeat Simple_repeat 1 173 0 2 1162 264 100 0 0 chr4 75673190 75673230 -79956890 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2 1162 279 0 0 0 chr4 75673490 75673521 -79956599 + (TTA)n Simple_repeat Simple_repeat 1 31 0 2 1162 210 150 0 0 chr4 75675555 75675595 -79954525 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1162 375 121 0 0 chr4 75676264 75676322 -79953798 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1162 309 51 0 0 chr4 75676721 75676760 -79953360 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1162 378 0 0 0 chr4 75676760 75676801 -79953319 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1162 187 225 0 97 chr4 75677218 75677276 -79952844 + MIR SINE MIR 63 115 -153 2 1162 196 28 26 53 chr4 75677725 75677763 -79952357 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1162 392 246 8 0 chr4 75677900 75677997 -79952123 - Lx8 LINE L1 -797 6663 6582 2 1162 953 290 118 25 chr4 75677999 75678406 -79951714 + Lx8 LINE L1 7024 7468 -5 2 1162 959 188 40 0 chr4 75678406 75678582 -79951538 + B2_Mm2 SINE B2 2 184 -11 2 1162 607 224 161 11 chr4 75679425 75679627 -79950493 + Lx3C LINE L1 6763 6936 -40 2 1162 23 0 0 0 chr4 75679641 75679664 -79950456 + AT_rich Low_complexity Low_complexity 1 23 0 2 1162 786 242 103 75 chr4 75679668 75679989 -79950131 + Lx3C LINE L1 6643 6972 -4 2 1162 331 309 26 43 chr4 75680486 75680601 -79949519 - MER5A1 DNA MER1_type -42 124 12 2 1162 6010 80 3 19 chr4 75680904 75681753 -79948367 + L1_Mus3 LINE L1 5799 6634 -4 2 1162 245 389 36 18 chr4 75681913 75682023 -79948097 - PB1D10 SINE Alu 0 117 6 2 1162 1217 97 0 43 chr4 75683258 75683423 -79946697 + B2_Mm2 SINE B2 1 161 -34 2 1162 378 0 0 0 chr4 75683423 75683465 -79946655 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 1162 1217 97 0 43 chr4 75683465 75683483 -79946637 + B2_Mm2 SINE B2 162 176 -19 2 1162 329 207 17 0 chr4 75683764 75683822 -79946298 + tRNA-Ala-GCY_ tRNA tRNA 6 64 -11 2 1162 259 315 29 58 chr4 75683822 75683901 -79946219 + BC1_Mm scRNA scRNA 12 144 -8 2 1162 194 179 0 18 chr4 75683901 75683958 -79946162 + GA-rich Low_complexity Low_complexity 1 56 0 2 1162 863 115 7 0 chr4 75684455 75684594 -79945526 + (TC)n Simple_repeat Simple_repeat 1 140 0 2 1162 253 232 36 0 chr4 75684794 75684850 -79945270 + RSINE1 SINE B4 64 121 -44 2 1162 288 0 0 0 chr4 75685846 75685878 -79944242 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1162 1795 186 13 71 chr4 75688178 75688559 -79941561 + ORR1B2 LTR MaLR 1 359 -8 2 1162 245 229 24 0 chr4 75688762 75688845 -79941275 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 2 1162 203 345 113 17 chr4 75689440 75689555 -79940565 - MIR3 SINE MIR -25 183 58 2 1162 1989 223 50 42 chr4 75690056 75690552 -79939568 + RLTR18 LTR ERVK 1 500 -116 2 1162 222 244 165 13 chr4 75693061 75693140 -79936980 - RSINE1 SINE B4 -74 91 1 2 1162 24 0 0 0 chr4 75693354 75693378 -79936742 + AT_rich Low_complexity Low_complexity 1 24 0 2 1162 234 0 0 0 chr4 75699218 75699244 -79930876 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1162 1204 61 0 0 chr4 75699244 75699391 -79930729 - B1_Mus2 SINE Alu 0 147 1 2 1162 301 381 43 22 chr4 75699757 75699942 -79930178 - MER5A DNA MER1_type 0 189 1 2 1162 189 180 0 0 chr4 75700525 75700575 -79929545 + A-rich Low_complexity Low_complexity 1 50 0 2 1162 49 18 0 0 chr4 75702267 75702323 -79927797 + AT_rich Low_complexity Low_complexity 1 56 0 2 1162 25 0 0 0 chr4 75702567 75702592 -79927528 + AT_rich Low_complexity Low_complexity 1 25 0 2 1162 600 257 73 0 chr4 75704277 75704413 -79925707 - B1_Mur4 SINE Alu -2 148 3 2 1162 3679 251 69 82 chr4 75706063 75707358 -79922762 + Lx9 LINE L1 6359 7636 -8 2 1162 354 45 0 0 chr4 75709150 75709194 -79920926 + (CAA)n Simple_repeat Simple_repeat 3 46 0 2 1162 261 0 0 0 chr4 75709538 75709567 -79920553 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1162 965 301 175 14 chr4 75710212 75710714 -79919406 + Lx8 LINE L1 6700 7282 -191 2 1162 21 57 0 0 chr4 75713011 75713046 -79917074 + AT_rich Low_complexity Low_complexity 1 35 0 2 1162 613 265 70 25 chr4 75713427 75713628 -79916492 + B3 SINE B2 2 211 -5 2 1162 186 342 164 0 chr4 75714128 75714201 -79915919 - MIRb SINE MIR -23 245 161 2 1162 180 0 0 0 chr4 75715212 75715232 -79914888 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1162 1108 52 0 0 chr4 75716872 75717007 -79913113 + B1_Mm SINE Alu 3 137 -10 2 1162 266 0 0 29 chr4 75717007 75717042 -79913078 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1162 883 249 5 10 chr4 75717051 75717258 -79912862 + B3 SINE B2 1 206 -10 2 1162 26 30 0 0 chr4 75718281 75718314 -79911806 + AT_rich Low_complexity Low_complexity 1 33 0 2 1162 1219 102 11 0 chr4 75718452 75718638 -79911482 + L1_Mus3 LINE L1 6447 6634 -4 2 1162 598 255 119 16 chr4 75719420 75719671 -79910449 + MER33 DNA MER1_type 1 277 -47 2 1162 339 44 0 0 chr4 75720871 75720916 -79909204 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1162 757 252 203 19 chr4 75721662 75721933 -79908187 + ORR1D2 LTR MaLR 6 326 -48 2 1162 281 203 0 56 chr4 75722130 75722255 -79907865 + (CACTG)n Simple_repeat Simple_repeat 5 122 0 2 1162 226 208 83 0 chr4 75724644 75724692 -79905428 - B3 SINE B2 -13 203 152 2 1162 615 256 70 18 chr4 75725129 75725300 -79904820 + B3A SINE B2 4 183 -15 2 1162 1100 60 24 6 chr4 75725772 75725940 -79904180 - L1_Mus3 LINE L1 -8 6630 6460 2 1162 329 43 21 0 chr4 75726217 75726264 -79903856 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1162 210 37 0 0 chr4 75726890 75726917 -79903203 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1162 878 183 7 0 chr4 75726955 75727097 -79903023 - B1_Mur4 SINE Alu -6 144 2 2 1162 1336 50 0 16 chr4 75727253 75727436 -79902684 + L1Md_F3 LINE L1 6404 6583 -1 2 1162 621 222 29 15 chr4 75727609 75727746 -79902374 - B1F2 SINE Alu 0 149 11 2 1162 375 281 26 0 chr4 75728242 75728356 -79901764 - PB1D10 SINE Alu 0 117 1 2 1162 25 0 0 0 chr4 75729116 75729141 -79900979 + AT_rich Low_complexity Low_complexity 1 25 0 2 1162 377 279 0 0 chr4 75731199 75731278 -79898842 - ID4 SINE ID -3 80 2 2 1162 226 279 32 75 chr4 75731840 75731933 -79898187 - IAPLTR3 LTR ERVK -59 267 179 2 1162 998 62 31 0 chr4 75732543 75732673 -79897447 + L1_Mus1 LINE L1 6135 6268 -299 2 1162 3204 167 24 14 chr4 75733945 75734534 -79895586 + RLTR17 LTR ERVK 98 692 0 2 1162 24 32 0 0 chr4 75734605 75734636 -79895484 + AT_rich Low_complexity Low_complexity 1 31 0 2 1162 480 267 7 36 chr4 75734645 75734785 -79895335 - B3A SINE B2 -22 176 41 2 1162 793 271 170 9 chr4 75736374 75736698 -79893422 + MTE2a LTR MaLR 1 376 -3 2 1162 183 80 0 0 chr4 75736956 75736981 -79893139 + (TTAGGG)n Simple_repeat Simple_repeat 1 25 0 2 1162 251 283 48 55 chr4 75739845 75739991 -79890129 + MER112 DNA MER1_type 36 180 -81 2 1162 2596 47 0 6 chr4 75742178 75742499 -79887621 + L1_Mus1 LINE L1 6247 6565 -2 2 1162 25 0 0 0 chr4 75742925 75742950 -79887170 + AT_rich Low_complexity Low_complexity 1 25 0 2 1162 307 273 158 49 chr4 75742965 75743231 -79886889 + Charlie1 DNA MER1_type 2485 2779 -2 2 1162 807 264 93 8 chr4 75744470 75744729 -79885391 - B4 SINE B4 -10 282 2 2 1162 228 197 0 62 chr4 75746722 75746787 -79883333 + A-rich Low_complexity Low_complexity 3 63 0 2 1162 282 125 0 0 chr4 75747198 75747246 -79882874 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1162 28 29 0 0 chr4 75747615 75747650 -79882470 + AT_rich Low_complexity Low_complexity 1 35 0 2 1162 993 110 14 0 chr4 75748319 75748464 -79881656 - B1_Mus1 SINE Alu 0 148 2 2 1162 411 21 0 0 chr4 75748640 75748688 -79881432 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1162 230 159 0 0 chr4 75748741 75748785 -79881335 + A-rich Low_complexity Low_complexity 1 44 0 2 1162 228 226 0 0 chr4 75749540 75749593 -79880527 + A-rich Low_complexity Low_complexity 2 54 0 3 1162 476 221 12 0 chr4 75749607 75749693 -79880427 + ID_B1 SINE B4 103 189 -35 3 1162 2408 128 70 7 chr4 75749734 75750015 -79880105 + Lx LINE L1 6227 6518 -136 3 1162 189 0 0 0 chr4 75750015 75750036 -79880084 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 3 1162 2408 128 70 7 chr4 75750036 75750157 -79879963 + Lx LINE L1 6519 6652 -2 3 1162 609 110 0 0 chr4 75750769 75750860 -79879260 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 3 1162 722 250 73 10 chr4 75750862 75751068 -79879052 + MTD LTR MaLR 143 361 -58 3 1162 1721 275 85 88 chr4 75751085 75752347 -79877773 + MTD-int LTR MaLR 1 1258 0 3 1162 240 86 0 0 chr4 75752360 75752395 -79877725 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1162 815 230 336 13 chr4 75752397 75752704 -79877416 + MTD LTR MaLR 13 421 0 3 1162 23 33 0 0 chr4 75752704 75752734 -79877386 + AT_rich Low_complexity Low_complexity 1 30 0 3 1162 728 224 0 36 chr4 75752749 75752888 -79877232 + B1_Mur2 SINE Alu 13 146 -3 3 1162 27 29 0 0 chr4 75753612 75753646 -79876474 + AT_rich Low_complexity Low_complexity 1 34 0 3 1162 1236 190 0 0 chr4 75753651 75753872 -79876248 + Lx9 LINE L1 6916 7136 -508 3 1162 7180 96 3 7 chr4 75754232 75755490 -79874630 - L1Md_F2 LINE L1 0 6582 5330 3 145 20736 145 54 49 chr4 75755486 75761047 -79869073 - L1Md_F LINE L1 -88 5795 204 3 1163 1892 227 67 13 chr4 75761063 75761523 -79868597 + Lx9 LINE L1 7152 7636 -8 3 1163 1470 211 63 29 chr4 75761664 75762011 -79868109 + ORR1B2 LTR MaLR 1 359 -8 3 1163 463 251 40 23 chr4 75762205 75762380 -79867740 + Lx9 LINE L1 7378 7555 -89 3 1163 4826 35 2 2 chr4 75764161 75764739 -79865381 + L1Md_F2 LINE L1 5990 6567 -15 3 1163 393 75 0 0 chr4 75764739 75764792 -79865328 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1163 1147 90 43 48 chr4 75765340 75765527 -79864593 + B2_Mm2 SINE B2 1 186 -9 3 1163 2154 106 22 0 chr4 75765653 75765965 -79864155 - ORR1A2 LTR MaLR -8 319 1 3 1163 10062 145 68 25 chr4 75765965 75767846 -79862274 - ORR1A2-int LTR MaLR 0 1963 1 3 1163 2408 104 3 0 chr4 75767846 75768172 -79861948 - ORR1A2 LTR MaLR 0 327 1 3 1163 201 242 0 46 chr4 75768195 75768260 -79861860 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 3 1163 632 317 87 23 chr4 75768596 75768861 -79861259 + B4A SINE B4 2 283 -9 3 1163 183 176 0 29 chr4 75769315 75769350 -79860770 + L4 LINE RTE 1706 1739 -290 3 1163 432 0 0 0 chr4 75769378 75769426 -79860694 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1163 245 268 82 155 chr4 75769850 75769947 -79860173 + B1_Mur4 SINE Alu 11 100 -17 3 1163 5644 72 40 11 chr4 75770730 75771541 -79858579 - L1_Mus1 LINE L1 0 6638 5729 3 1163 42 0 0 0 chr4 75772496 75772538 -79857582 + AT_rich Low_complexity Low_complexity 1 42 0 3 1163 460 296 7 7 chr4 75772878 75773014 -79857106 - B1_Mus1 SINE Alu 0 148 13 3 1163 240 212 56 142 chr4 75773219 75773312 -79856808 + MTEb LTR MaLR 291 373 -6 3 1163 1553 55 0 0 chr4 75773510 75773711 -79856409 + L1Md_F2 LINE L1 6382 6582 0 3 1163 821 153 14 0 chr4 75775104 75775248 -79854872 - URR1A DNA MER1_type 0 226 81 3 1163 234 125 0 70 chr4 75775331 75775374 -79854746 - L3 LINE CR1 -3059 1430 1391 3 1163 319 345 0 0 chr4 75775379 75775466 -79854654 + MIRm SINE MIR 67 153 -123 3 1163 389 213 26 12 chr4 75775743 75775839 -79854281 + MTD LTR MaLR 340 419 0 3 1163 660 93 0 0 chr4 75775945 75776042 -79854078 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 1163 207 139 0 0 chr4 75776452 75776488 -79853632 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1163 212 297 50 67 chr4 75778580 75778699 -79851421 + B1F1 SINE Alu 24 140 -9 3 1163 415 204 22 15 chr4 75779835 75780114 -79850006 + (TG)n Simple_repeat Simple_repeat 1 281 0 3 1163 216 130 0 0 chr4 75783397 75783443 -79846677 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1163 321 226 0 0 chr4 75784077 75784161 -79845959 + A-rich Low_complexity Low_complexity 1 84 0 3 1163 375 23 0 0 chr4 75784858 75784902 -79845218 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1163 23 0 0 0 chr4 75785116 75785139 -79844981 + AT_rich Low_complexity Low_complexity 1 23 0 3 1163 31 0 0 0 chr4 75786317 75786348 -79843772 + AT_rich Low_complexity Low_complexity 1 31 0 3 1163 1979 77 22 7 chr4 75787274 75787578 -79842542 + L1Md_F2 LINE L1 6291 6582 0 3 1163 356 288 51 25 chr4 75787578 75787735 -79842385 + MER2 DNA MER2_type 128 288 -57 3 1163 931 130 0 17 chr4 75787735 75787971 -79842149 + (TG)n Simple_repeat Simple_repeat 1 231 0 3 1163 234 0 0 0 chr4 75789833 75789859 -79840261 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1163 674 24 0 12 chr4 75791609 75791694 -79838426 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 3 1163 694 240 272 7 chr4 75791887 75792181 -79837939 + ORR1D1 LTR MaLR 1 372 -2 3 1163 268 305 24 0 chr4 75793123 75793205 -79836915 + GA-rich Low_complexity Low_complexity 3 86 0 3 1163 738 193 37 0 chr4 75794109 75794244 -79835876 - B1_Mus1 SINE Alu -6 142 3 3 1163 25 31 0 0 chr4 75794281 75794313 -79835807 + AT_rich Low_complexity Low_complexity 1 32 0 3 1163 298 243 14 14 chr4 75794396 75794467 -79835653 - ID4_ SINE ID -2 81 11 3 1163 416 356 44 0 chr4 75796262 75796397 -79833723 + RSINE1 SINE B4 11 151 -14 3 1163 324 0 0 0 chr4 75796406 75796442 -79833678 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1163 1104 98 0 0 chr4 75796730 75796894 -79833226 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 3 1163 1000 119 14 0 chr4 75796894 75797037 -79833083 + B1_Mus2 SINE Alu 3 147 0 3 1163 315 65 0 0 chr4 75797037 75797083 -79833037 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1163 5147 40 2 0 chr4 75797529 75798153 -79831967 + L1Md_F3 LINE L1 5958 6582 -2 3 1163 244 301 124 57 chr4 75798371 75798565 -79831555 + L1MC4 LINE L1 6794 7000 -1042 3 1163 356 317 14 0 chr4 75798617 75798759 -79831361 + L1MC4 LINE L1 7261 7404 -638 3 1163 306 283 0 21 chr4 75799203 75799297 -79830823 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1163 406 303 13 64 chr4 75799300 75799346 -79830774 - Lx9 LINE L1 -126 7518 7479 3 1163 417 20 0 0 chr4 75799346 75799396 -79830724 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 3 1163 406 303 13 64 chr4 75799396 75799582 -79830538 - Lx9 LINE L1 -166 7478 7298 3 1163 193 242 48 16 chr4 75800109 75800172 -79829948 - L3 LINE CR1 -1910 2579 2515 3 1163 276 307 10 10 chr4 75801282 75801384 -79828736 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 3 1163 211 111 28 0 chr4 75802283 75802319 -79827801 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1163 334 286 43 11 chr4 75802356 75802448 -79827672 - RSINE1 SINE B4 -14 151 57 3 1163 1045 321 80 35 chr4 75802457 75803467 -79826653 + Lx8 LINE L1 4822 5880 -1593 3 1163 1554 48 0 0 chr4 75803510 75803697 -79826423 - B2_Mm1a SINE B2 -5 188 2 3 1163 445 262 109 5 chr4 75803932 75804116 -79826004 + Lx8 LINE L1 6891 7093 -380 3 1163 23 0 0 0 chr4 75804598 75804621 -79825499 + AT_rich Low_complexity Low_complexity 1 23 0 3 1163 355 38 38 0 chr4 75805387 75805440 -79824680 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 3 1163 307 237 0 0 chr4 75805771 75805830 -79824290 + PB1D10 SINE Alu 41 99 -18 3 1163 760 249 33 42 chr4 75806099 75806313 -79823807 + B3 SINE B2 1 212 -4 3 1163 1447 149 6 73 chr4 75806380 75806721 -79823399 + RMER17C LTR ERVK 1 318 -92 3 1163 212 192 77 47 chr4 75812166 75812335 -79817785 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 3 1163 210 200 72 40 chr4 75812358 75812483 -79817637 + (TAGA)n Simple_repeat Simple_repeat 1 129 0 3 1163 365 322 39 13 chr4 75813013 75813113 -79817007 + RMER30 DNA MER1_type 1 98 -104 3 1163 417 116 0 0 chr4 75813113 75813182 -79816938 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3 1163 365 322 39 13 chr4 75813182 75813235 -79816885 + RMER30 DNA MER1_type 99 156 -46 3 1163 1004 241 5 9 chr4 75813940 75814154 -79815966 + B3 SINE B2 4 216 0 3 1163 21 36 0 0 chr4 75814187 75814215 -79815905 + AT_rich Low_complexity Low_complexity 1 28 0 3 1163 307 232 123 62 chr4 75814328 75814539 -79815581 + L1ME1 LINE L1 5756 5979 -200 3 1163 288 0 0 0 chr4 75814693 75814725 -79815395 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1163 1476 198 65 34 chr4 75814725 75815081 -79815039 - ORR1C1 LTR MaLR -3 375 9 3 1163 294 331 20 20 chr4 75815170 75815318 -79814802 + B1F SINE Alu 1 148 -1 3 1163 23 33 0 0 chr4 75815544 75815574 -79814546 + AT_rich Low_complexity Low_complexity 1 30 0 3 1163 423 83 0 0 chr4 75815834 75815894 -79814226 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1163 334 65 0 75 chr4 75817155 75817222 -79812898 + L1Md_F2 LINE L1 6521 6582 0 3 1163 291 28 0 0 chr4 75818516 75818552 -79811568 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1163 274 61 0 0 chr4 75818641 75818690 -79811430 - L1Md_F2 LINE L1 0 6582 6534 3 1163 728 52 0 10 chr4 75819013 75819111 -79811009 + (TTCC)n Simple_repeat Simple_repeat 2 98 0 3 1163 1289 73 6 0 chr4 75820664 75820842 -79809278 + (TTC)n Simple_repeat Simple_repeat 2 180 0 3 1163 720 161 0 0 chr4 75820843 75820986 -79809134 + CT-rich Low_complexity Low_complexity 3 145 0 3 1163 633 212 14 14 chr4 75821013 75821152 -79808968 - B1_Mus1 SINE Alu -9 139 1 3 1163 236 189 38 0 chr4 75821730 75821783 -79808337 + A-rich Low_complexity Low_complexity 3 57 0 3 1163 326 129 48 0 chr4 75822267 75822329 -79807791 + RLTR24 LTR ERV1 465 529 0 3 1163 549 257 32 21 chr4 75822440 75822627 -79807493 + B3A SINE B2 4 192 -6 3 1163 577 228 26 58 chr4 75822709 75822863 -79807257 + B1_Mur2 SINE Alu 1 149 0 3 1163 27 62 0 0 chr4 75822948 75822996 -79807124 + AT_rich Low_complexity Low_complexity 1 48 0 3 1163 606 39 0 0 chr4 75823237 75823314 -79806806 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1163 453 291 9 18 chr4 75824367 75824479 -79805641 - PB1D7 SINE Alu 0 120 10 3 1163 198 0 0 0 chr4 75825124 75825146 -79804974 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1163 213 39 0 0 chr4 75826052 75826078 -79804042 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1163 398 79 16 0 chr4 75827238 75827301 -79802819 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1163 24 0 0 0 chr4 75827338 75827362 -79802758 + AT_rich Low_complexity Low_complexity 1 24 0 4 1163 195 129 0 0 chr4 75828198 75828229 -79801891 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1163 376 170 161 0 chr4 75828255 75828367 -79801753 - Lx7 LINE L1 -4 7692 7563 4 1163 189 74 0 0 chr4 75828401 75828428 -79801692 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1163 1057 207 5 0 chr4 75828431 75828634 -79801486 - Lx7 LINE L1 -285 7411 7208 4 1163 552 305 61 54 chr4 75829041 75829318 -79800802 + B4A SINE B4 4 282 -10 4 1163 297 51 0 0 chr4 75829325 75829364 -79800756 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1163 274 392 47 33 chr4 75829581 75829792 -79800328 - MER2 DNA MER2_type -1 344 131 4 1163 198 0 0 0 chr4 75830902 75830924 -79799196 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1163 183 380 77 8 chr4 75832661 75832791 -79797329 - L2b LINE L2 -1 3374 3236 4 1163 21 36 0 0 chr4 75833166 75833194 -79796926 + AT_rich Low_complexity Low_complexity 1 28 0 4 1163 211 239 0 0 chr4 75833941 75833987 -79796133 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1163 368 309 117 45 chr4 75834979 75835226 -79794894 + L1MC LINE L1 5315 5579 -2206 4 1163 430 350 31 0 chr4 75835535 75835695 -79794425 - B3 SINE B2 -49 167 3 4 1163 393 22 0 0 chr4 75837376 75837422 -79792698 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1163 210 71 0 0 chr4 75837496 75837524 -79792596 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 4 1163 1100 252 93 30 chr4 75838100 75838659 -79791461 - L1_Mur3 LINE L1 -689 5608 4992 4 1163 954 287 33 13 chr4 75838735 75839042 -79791078 + Lx8 LINE L1 6801 7113 -360 4 1163 230 0 33 0 chr4 75839225 75839255 -79790865 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1163 21 36 0 0 chr4 75840116 75840144 -79789976 + AT_rich Low_complexity Low_complexity 1 28 0 4 1163 327 406 9 0 chr4 75840201 75840307 -79789813 - RSINE1 SINE B4 -2 163 57 4 1163 618 257 14 7 chr4 75840376 75840521 -79789599 + B1F2 SINE Alu 2 147 -2 4 1163 294 95 0 0 chr4 75840561 75840603 -79789517 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 4 1163 186 118 0 0 chr4 75842364 75842398 -79787722 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1163 1653 77 0 5 chr4 75843138 75843359 -79786761 + L1Md_F2 LINE L1 6348 6567 -15 4 1163 21 36 0 0 chr4 75843359 75843387 -79786733 + AT_rich Low_complexity Low_complexity 1 28 0 4 1163 29 60 0 0 chr4 75843418 75843468 -79786652 + AT_rich Low_complexity Low_complexity 1 50 0 4 1163 331 327 94 75 chr4 75843491 75843703 -79786417 + B3 SINE B2 1 216 0 4 1163 313 319 17 26 chr4 75845151 75845267 -79784853 - PB1D9 SINE Alu 0 120 6 4 1163 1093 280 55 14 chr4 75845274 75845567 -79784553 + MTD LTR MaLR 101 405 -14 4 1163 407 368 40 26 chr4 75846043 75846269 -79783851 + B4A SINE B4 60 288 -4 4 1163 369 0 0 0 chr4 75846320 75846361 -79783759 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1163 53 17 0 0 chr4 75846453 75846513 -79783607 + AT_rich Low_complexity Low_complexity 1 60 0 4 1163 594 0 0 0 chr4 75846604 75846670 -79783450 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 4 1163 512 329 28 5 chr4 75847097 75847308 -79782812 - B3 SINE B2 0 216 1 4 1163 183 80 0 0 chr4 75847324 75847349 -79782771 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 4 1163 448 309 40 52 chr4 75847615 75847789 -79782331 - MTD LTR MaLR -200 219 48 4 1163 198 0 0 0 chr4 75850608 75850630 -79779490 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1163 273 29 0 0 chr4 75850638 75850672 -79779448 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1163 465 128 0 44 chr4 75851048 75851138 -79778982 + L1Md_F2 LINE L1 6495 6580 -2 4 1163 22 0 0 0 chr4 75852132 75852154 -79777966 + AT_rich Low_complexity Low_complexity 1 22 0 4 1163 186 43 0 0 chr4 75852680 75852703 -79777417 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1163 417 39 0 0 chr4 75852704 75852755 -79777365 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 1163 1070 124 0 6 chr4 75852755 75852917 -79777203 - B2_Mm2 SINE B2 -33 162 2 4 1163 41242 8 0 2 chr4 75853657 75861053 -79769067 - L1Md_A LINE L1 0 6582 1 4 1163 200 333 0 0 chr4 75861087 75861156 -79768964 + GA-rich Low_complexity Low_complexity 1 69 0 4 1163 455 325 71 0 chr4 75861356 75861525 -79768595 + B3A SINE B2 2 182 -16 4 1163 25 31 0 0 chr4 75861532 75861564 -79768556 + AT_rich Low_complexity Low_complexity 1 32 0 4 1163 1327 94 5 5 chr4 75865012 75865204 -79764916 - B2_Mm1t SINE B2 0 193 2 4 1163 1609 176 124 58 chr4 75865617 75866068 -79764052 - RMER6C LTR ERVK 0 690 210 4 1163 6756 107 34 1 chr4 75866068 75867049 -79763071 - Lx LINE L1 -21 6633 5621 4 1163 1097 149 118 19 chr4 75867050 75867262 -79762858 - RMER6C LTR ERVK -457 233 1 4 1163 25 31 0 0 chr4 75868016 75868048 -79762072 + AT_rich Low_complexity Low_complexity 1 32 0 4 1163 357 43 0 0 chr4 75868371 75868418 -79761702 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1163 392 342 85 21 chr4 75869166 75869354 -79760766 + MER82 DNA MER2_type 453 652 -1 4 1163 274 293 21 138 chr4 75870911 75871244 -79758876 - Lx9 LINE L1 0 7644 7351 4 1163 613 228 21 0 chr4 75872694 75872839 -79757281 + B1_Mur4 SINE Alu 2 149 -1 4 1163 481 291 61 5 chr4 75873947 75874144 -79755976 - L1MA8 LINE L1 -218 6073 5866 4 1163 511 241 113 107 chr4 75874203 75874380 -79755740 - B3A SINE B2 -15 183 6 4 1163 383 52 0 17 chr4 75875321 75875380 -79754740 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 4 1163 545 266 0 0 chr4 75876855 75876964 -79753156 - B1_Mur2 SINE Alu -5 144 36 4 1163 944 300 154 11 chr4 75877695 75878227 -79751893 + Lx8 LINE L1 6831 7438 -35 4 1163 303 28 0 0 chr4 75878494 75878530 -79751590 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1163 339 25 0 0 chr4 75878616 75878656 -79751464 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1163 1425 160 80 110 chr4 75878810 75878951 -79751169 + ORR1A4 LTR MaLR 1 128 -201 4 1163 207 0 0 0 chr4 75878951 75878974 -79751146 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1163 1425 160 80 110 chr4 75878974 75879169 -79750951 + ORR1A4 LTR MaLR 129 327 -2 4 1163 6388 156 48 40 chr4 75879171 75880612 -79749508 + ORR1A4-int LTR MaLR 1 1956 -7 4 1163 1847 137 15 60 chr4 75880626 75880961 -79749159 + ORR1A4 LTR MaLR 2 321 -8 4 1163 335 169 14 0 chr4 75881520 75881591 -79748529 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1163 21 57 0 0 chr4 75882506 75882541 -79747579 + AT_rich Low_complexity Low_complexity 1 35 0 4 1163 198 0 0 0 chr4 75882872 75882894 -79747226 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1163 471 259 229 50 chr4 75882921 75883161 -79746959 - B4A SINE B4 -9 283 1 4 1163 648 293 109 16 chr4 75883621 75884049 -79746071 + MLT2B4 LTR ERVL 24 552 -4 4 1163 251 54 0 26 chr4 75886653 75886691 -79743429 + (TAA)n Simple_repeat Simple_repeat 2 38 0 4 1163 274 252 216 22 chr4 75886979 75887113 -79743007 + LFSINE_Vert SINE SINE 118 277 -182 4 1164 27 81 0 0 chr4 75890880 75890942 -79739178 + AT_rich Low_complexity Low_complexity 1 62 0 4 1164 200 276 68 17 chr4 75891027 75891086 -79739034 - L2a LINE L2 -25 3401 3340 4 1164 231 36 0 0 chr4 75891087 75891115 -79739005 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1164 23 0 0 0 chr4 75893600 75893623 -79736497 + AT_rich Low_complexity Low_complexity 1 23 0 4 1164 364 307 170 0 chr4 75893937 75894090 -79736030 - B3A SINE B2 -13 185 7 4 1164 611 133 9 0 chr4 75894462 75894567 -79735553 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 4 1164 27 0 0 0 chr4 75895129 75895156 -79734964 + AT_rich Low_complexity Low_complexity 1 27 0 4 1164 258 227 0 0 chr4 75896293 75896368 -79733752 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1164 23 0 0 0 chr4 75896496 75896519 -79733601 + AT_rich Low_complexity Low_complexity 1 23 0 4 1164 1292 165 4 18 chr4 75898097 75898325 -79731795 + URR1A DNA MER1_type 2 226 0 4 1164 197 265 145 0 chr4 75902238 75902321 -79727799 - L3 LINE CR1 -422 4067 3973 4 1164 371 270 20 0 chr4 75902342 75902442 -79727678 + PB1D9 SINE Alu 5 106 -14 4 1164 340 265 0 14 chr4 75902453 75902591 -79727529 + GA-rich Low_complexity Low_complexity 2 137 0 4 1164 929 76 8 0 chr4 75903183 75903314 -79726806 + (GAA)n Simple_repeat Simple_repeat 2 133 0 4 1164 566 163 0 0 chr4 75903424 75903516 -79726604 + 4.5SRNA scRNA scRNA 1 92 -2 4 1164 1122 64 0 7 chr4 75903516 75903658 -79726462 + B1_Mm SINE Alu 2 142 -5 4 1164 255 125 0 0 chr4 75903658 75903698 -79726422 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1164 189 0 0 0 chr4 75903704 75903725 -79726395 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1164 600 230 22 7 chr4 75904665 75904801 -79725319 - B1_Mur1 SINE Alu 0 149 12 4 1164 26 0 0 0 chr4 75905513 75905539 -79724581 + AT_rich Low_complexity Low_complexity 1 26 0 4 1164 655 215 27 38 chr4 75909970 75910154 -79719966 + B2_Mm2 SINE B2 1 182 -13 4 1164 270 0 0 0 chr4 75910180 75910210 -79719910 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1164 361 314 9 0 chr4 75912023 75912130 -79717990 - ID_B1 SINE B4 -39 185 82 4 1164 1194 61 0 7 chr4 75915708 75915856 -79714264 - B1_Mm SINE Alu 0 147 1 4 1164 27 62 0 0 chr4 75918405 75918453 -79711667 + AT_rich Low_complexity Low_complexity 1 48 0 4 1164 1340 217 89 43 chr4 75918531 75918878 -79711242 + ORR1D2 LTR MaLR 5 367 -3 4 1164 1598 69 9 5 chr4 75919526 75919745 -79710375 - L1_Mus3 LINE L1 -19 6619 6400 4 1164 261 0 0 0 chr4 75920808 75920837 -79709283 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1164 209 225 0 0 chr4 75921857 75921897 -79708223 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 1164 510 17 0 0 chr4 75923071 75923130 -79706990 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1164 206 239 22 0 chr4 75923130 75923176 -79706944 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1164 375 23 0 0 chr4 75923318 75923362 -79706758 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1164 977 156 156 0 chr4 75925031 75925223 -79704897 + URR1A DNA MER1_type 3 224 -2 5 1164 422 263 0 0 chr4 75926211 75926297 -79703823 + ID_B1 SINE B4 88 169 -55 5 1164 21 0 0 0 chr4 75926381 75926402 -79703718 + AT_rich Low_complexity Low_complexity 1 21 0 5 1164 593 311 12 0 chr4 75926573 75926734 -79703386 - B3A SINE B2 -34 164 2 5 1164 421 305 0 15 chr4 75926928 75927058 -79703062 + Lx9 LINE L1 5835 5962 -1682 5 1164 1104 354 62 37 chr4 75927175 75927292 -79702828 + Lx9 LINE L1 6085 6197 -1276 5 1164 270 0 0 0 chr4 75927292 75927322 -79702798 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1164 2277 296 107 31 chr4 75927322 75928523 -79701597 + Lx9 LINE L1 6198 7630 -14 5 1164 2916 106 19 17 chr4 75929900 75930361 -79699759 + L1_Mus3 LINE L1 6174 6635 -3 5 1164 291 316 0 0 chr4 75934379 75934455 -79695665 + ID4_ SINE ID 2 77 -6 5 1164 576 106 0 0 chr4 75934470 75934564 -79695556 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 1164 25 51 0 0 chr4 75935014 75935053 -79695067 + AT_rich Low_complexity Low_complexity 1 39 0 5 1164 296 227 32 40 chr4 75935074 75935198 -79694922 - L1MA7 LINE L1 -73 6218 6096 5 1164 357 342 153 5 chr4 75936477 75936680 -79693440 - MLT1J2 LTR MaLR -15 433 201 5 1164 296 286 35 9 chr4 75936738 75936851 -79693269 + L1MA4 LINE L1 5678 5793 -507 5 1164 373 263 35 0 chr4 75936901 75937015 -79693105 + L1MA4 LINE L1 5781 5898 -402 5 1164 225 295 11 114 chr4 75937272 75937360 -79692760 - B1F1 SINE Alu -70 79 1 5 1164 225 314 0 0 chr4 75937311 75937362 -79692758 - ID_B1 SINE B4 -94 130 80 5 1164 223 385 141 0 chr4 75939938 75940016 -79690104 + B1F1 SINE Alu 13 101 -48 5 1164 228 222 26 65 chr4 75942035 75942112 -79688008 + Charlie6 DNA MER1_type 1178 1251 -2249 5 1164 1200 291 40 102 chr4 75945670 75946419 -79683701 - L1_Rod LINE L1 -63 5784 5082 5 1164 522 46 0 0 chr4 75946446 75946511 -79683609 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1164 690 122 0 0 chr4 75948178 75948285 -79681835 + (TCC)n Simple_repeat Simple_repeat 1 107 0 5 1164 1025 284 57 12 chr4 75952113 75952516 -79677604 + L1MA6 LINE L1 5446 5866 -434 5 1164 303 170 0 3 chr4 75952670 75952729 -79677391 - B1_Mus2 SINE Alu -1 149 90 5 1164 774 190 19 6 chr4 75953219 75953378 -79676742 - URR1A DNA MER1_type -8 218 58 5 1164 302 333 39 22 chr4 75953378 75953397 -79676723 + CYRA11_Mm Unknown Y-chromosome 179 359 -258 5 1164 1920 239 18 0 chr4 75953733 75954131 -79675989 - MTD LTR MaLR -14 405 1 5 1164 24 32 0 0 chr4 75954489 75954520 -79675600 + AT_rich Low_complexity Low_complexity 1 31 0 5 1164 333 312 54 0 chr4 75954748 75954860 -79675260 + B4 SINE B4 22 139 -153 5 1164 21 36 0 0 chr4 75955650 75955678 -79674442 + AT_rich Low_complexity Low_complexity 1 28 0 5 1164 1208 211 191 14 chr4 75955689 75956045 -79674075 - MTD LTR MaLR 0 419 1 5 1164 304 358 17 95 chr4 75956148 75956327 -79673793 + B4 SINE B4 128 292 0 5 1164 354 80 0 0 chr4 75956367 75956417 -79673703 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1164 180 0 0 0 chr4 75956417 75956436 -79673684 + (CG)n Simple_repeat Simple_repeat 1 20 0 5 1164 2311 167 108 144 chr4 75958070 75958887 -79671233 - RMER17D2 LTR ERVK -22 787 1 5 1164 183 114 0 0 chr4 75959240 75959275 -79670845 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1164 440 286 37 15 chr4 75960672 75960807 -79669313 + MER58B DNA MER1_type 186 323 -18 5 1164 392 316 22 0 chr4 75961013 75961152 -79668968 - RMER15 LTR ERVL 0 575 434 5 1164 355 289 18 0 chr4 75962128 75962242 -79667878 + PB1D10 SINE Alu 2 117 0 5 1164 26 74 0 0 chr4 75962369 75962423 -79667697 + AT_rich Low_complexity Low_complexity 1 54 0 5 1164 262 252 255 13 chr4 75962446 75962603 -79667517 - MIR SINE MIR -11 251 57 5 1164 407 319 20 14 chr4 75963224 75963370 -79666750 + B1F2 SINE Alu 1 147 -2 5 1164 336 24 0 0 chr4 75963578 75963619 -79666501 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1164 24 0 0 0 chr4 75964553 75964577 -79665543 + AT_rich Low_complexity Low_complexity 1 24 0 5 1164 687 252 13 3 chr4 75965229 75965404 -79664716 + B3A SINE B2 4 186 -30 5 1164 261 140 0 0 chr4 75965436 75965493 -79664627 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 5 1164 230 136 23 0 chr4 75966645 75966689 -79663431 + (TTG)n Simple_repeat Simple_repeat 3 47 0 5 1164 414 0 0 0 chr4 75967766 75967812 -79662308 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1164 33 0 0 0 chr4 75967812 75967845 -79662275 + AT_rich Low_complexity Low_complexity 1 33 0 5 1164 669 25 0 0 chr4 75967866 75967945 -79662175 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 5 1164 873 29 0 0 chr4 75968053 75968157 -79661963 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1164 1575 260 31 0 chr4 75968952 75969337 -79660783 + MTD LTR MaLR 8 404 -15 5 1164 387 0 0 0 chr4 75969899 75969942 -79660178 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1164 432 288 21 90 chr4 75971624 75971641 -79658479 - B3 SINE B2 -17 199 185 5 1164 378 0 0 0 chr4 75971641 75971683 -79658437 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1164 432 288 21 90 chr4 75971683 75971810 -79658310 - B3 SINE B2 -32 184 65 5 1164 192 309 68 48 chr4 75971915 75972061 -79658059 - MER5A DNA MER1_type -38 151 3 5 1164 435 340 74 7 chr4 75972338 75972486 -79657634 + RSINE1 SINE B4 6 163 -2 5 1164 25 0 0 0 chr4 75974214 75974239 -79655881 + AT_rich Low_complexity Low_complexity 1 25 0 5 1164 316 0 22 22 chr4 75974386 75974431 -79655689 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 1164 1100 38 8 0 chr4 75974431 75974563 -79655557 - B1_Mus1 SINE Alu -13 135 3 5 1164 277 270 19 48 chr4 75975064 75975169 -79654951 + MTEb LTR MaLR 278 379 0 5 1164 294 95 0 0 chr4 75976252 75976294 -79653826 + (TATG)n Simple_repeat Simple_repeat 3 44 0 5 1164 25 51 0 0 chr4 75976469 75976508 -79653612 + AT_rich Low_complexity Low_complexity 1 39 0 5 1164 2664 240 79 88 chr4 75976560 75977474 -79652646 + Lx7 LINE L1 6548 7453 -243 5 1164 372 178 0 0 chr4 75978182 75978255 -79651865 + GA-rich Low_complexity Low_complexity 2 74 0 5 1164 642 299 108 26 chr4 75978942 75979541 -79650579 + L1MA5A LINE L1 5591 6291 0 5 1164 738 78 78 0 chr4 75979818 75979933 -79650187 + B1_Mm SINE Alu 24 147 0 5 1164 229 61 59 39 chr4 75979935 75979986 -79650134 + A-rich Low_complexity Low_complexity 3 54 0 5 1164 27 0 0 0 chr4 75981106 75981133 -79648987 + AT_rich Low_complexity Low_complexity 1 27 0 5 1164 351 44 0 0 chr4 75981145 75981190 -79648930 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1164 356 111 0 14 chr4 75981192 75981265 -79648855 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1164 291 250 269 0 chr4 75981280 75981388 -79648732 - B1F SINE Alu -8 141 5 5 1164 357 370 43 62 chr4 75981822 75982032 -79648088 + MER20 DNA MER1_type 1 206 -13 5 1164 22 0 0 0 chr4 75985948 75985970 -79644150 + AT_rich Low_complexity Low_complexity 1 22 0 5 1164 291 281 203 19 chr4 75987282 75987597 -79642523 + L1M5 LINE L1 4872 5244 -902 5 1164 310 289 66 50 chr4 75987736 75987918 -79642202 + L1M5 LINE L1 5414 5598 -642 5 1164 681 306 107 23 chr4 75988209 75988724 -79641396 + L1_Mur3 LINE L1 3791 4348 -1532 5 1164 414 0 0 0 chr4 75988777 75988823 -79641297 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1164 1751 176 3 9 chr4 75988905 75989243 -79640877 + Lx LINE L1 6319 6654 0 5 1164 498 292 86 5 chr4 75990265 75990451 -79639669 - MER105 DNA DNA -3 201 1 5 1164 303 28 0 0 chr4 75990643 75990679 -79639441 + (CAA)n Simple_repeat Simple_repeat 2 37 0 5 1164 195 216 0 0 chr4 75990953 75990990 -79639130 - MIR SINE MIR -63 145 109 5 1164 376 255 113 92 chr4 75991122 75991360 -79638760 + MLT1B LTR MaLR 11 253 -137 5 1164 669 303 119 31 chr4 75991603 75991991 -79638129 - MT2A LTR ERVL -107 426 5 5 1164 366 209 18 7 chr4 75991983 75992077 -79638043 + MLT1B LTR MaLR 295 465 -2 5 1164 24 77 0 0 chr4 75992231 75992283 -79637837 + AT_rich Low_complexity Low_complexity 1 52 0 5 1164 26 88 0 0 chr4 75992398 75992466 -79637654 + AT_rich Low_complexity Low_complexity 1 68 0 5 1164 225 294 71 29 chr4 75992544 75992614 -79637506 + RSINE1 SINE B4 21 93 -72 5 1164 609 260 164 3 chr4 75992692 75993028 -79637092 + L1_Mur3 LINE L1 3875 4264 -1616 5 1164 742 237 73 92 chr4 75993037 75993408 -79636712 + L1_Mur3 LINE L1 4638 5001 -879 5 1164 694 244 176 82 chr4 75993430 75993770 -79636350 + L1_Rod LINE L1 5388 5759 -88 5 1164 467 220 0 52 chr4 75994349 75994445 -79635675 + B3A SINE B2 2 92 -106 5 1164 23 33 0 0 chr4 75994592 75994622 -79635498 + AT_rich Low_complexity Low_complexity 1 30 0 5 1164 1032 244 157 16 chr4 75995294 75995607 -79634513 + ORR1E LTR MaLR 1 357 -2 5 1164 21 0 0 0 chr4 75995851 75995872 -79634248 + AT_rich Low_complexity Low_complexity 1 21 0 5 1164 250 324 72 22 chr4 75999157 75999296 -79630824 + B4A SINE B4 129 274 -18 5 1164 468 99 0 0 chr4 75999339 75999410 -79630710 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1164 383 318 83 58 chr4 75999597 75999891 -79630229 + MLT1F1 LTR MaLR 236 505 0 5 1164 2659 281 66 60 chr4 76000050 76001108 -79629012 + Lx8 LINE L1 6383 7446 -27 1 1164 328 333 66 28 chr4 76001133 76001346 -79628774 + L1_Rod LINE L1 80 300 -6872 2 1164 1291 247 23 11 chr4 76001351 76001395 -79628725 + L1_Rod LINE L1 3616 3663 -2184 3 1164 816 11 0 0 chr4 76001395 76001488 -79628632 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 1164 1291 247 23 11 chr4 76001488 76001795 -79628325 + L1_Rod LINE L1 3664 3971 -1876 3 1164 1732 211 72 72 chr4 76001797 76002338 -79627782 + Lx9 LINE L1 6916 7456 -188 5 1164 447 35 0 0 chr4 76002345 76002402 -79627718 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1164 1920 208 61 5 chr4 76002404 76002795 -79627325 - MTC LTR MaLR -8 413 1 7 1164 201 39 0 0 chr4 76002811 76002837 -79627283 + (CCA)n Simple_repeat Simple_repeat 1 26 0 8 1164 586 146 0 8 chr4 76002852 76002976 -79627144 + Lx9 LINE L1 7521 7643 -1 5 1164 330 91 0 0 chr4 76004030 76004085 -79626035 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 9 1164 1377 256 68 15 chr4 76004272 76004668 -79625452 - MTD LTR MaLR 0 419 3 1 1164 312 274 221 0 chr4 76005267 76005380 -79624740 + B1F SINE Alu 3 140 -9 1 1164 22 0 0 0 chr4 76005479 76005501 -79624619 + AT_rich Low_complexity Low_complexity 1 22 0 1 1164 444 19 0 0 chr4 76005774 76005827 -79624293 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1164 331 370 42 10 chr4 76007254 76007562 -79622558 - L1MEc LINE L1 -5574 826 509 1 1164 261 83 0 0 chr4 76009058 76009094 -79621026 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1164 189 0 0 0 chr4 76010054 76010075 -79620045 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1164 252 236 0 0 chr4 76010108 76010180 -79619940 + T-rich Low_complexity Low_complexity 1 72 0 1 1164 573 220 98 0 chr4 76010180 76010312 -79619808 - B1_Mus1 SINE Alu 0 148 4 1 1164 299 265 97 10 chr4 76010363 76010466 -79619654 - RSINE1 SINE B4 -38 127 16 1 1164 867 291 98 69 chr4 76010627 76010974 -79619146 + MTEb LTR MaLR 23 379 0 2 1164 201 283 0 0 chr4 76011774 76011820 -79618300 + A-rich Low_complexity Low_complexity 5 50 0 2 1164 387 0 0 0 chr4 76011841 76011884 -79618236 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1164 766 201 117 9 chr4 76013634 76013865 -79616255 - L1MA8 LINE L1 -38 6253 5998 2 1164 23 0 0 0 chr4 76013998 76014021 -79616099 + AT_rich Low_complexity Low_complexity 1 23 0 2 1164 526 294 96 25 chr4 76014488 76014711 -79615409 - MIR SINE MIR -6 256 28 2 1164 540 0 0 0 chr4 76017021 76017081 -79613039 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1164 470 301 47 47 chr4 76017349 76017499 -79612621 + B3A SINE B2 48 197 -1 2 1164 1017 227 14 0 chr4 76017507 76017714 -79612406 + B3 SINE B2 1 210 -6 2 1164 823 266 33 19 chr4 76017746 76017957 -79612163 + B3 SINE B2 3 216 0 2 1164 1248 166 14 5 chr4 76017992 76018210 -79611910 - URR1A DNA MER1_type -6 220 1 3 1164 372 43 0 0 chr4 76018346 76018392 -79611728 + (CAA)n Simple_repeat Simple_repeat 3 48 0 3 1164 887 269 5 1 chr4 76018393 76018597 -79611523 + Lx8 LINE L1 6440 6662 -982 3 1164 584 261 85 0 chr4 76018630 76018795 -79611325 + Lx8 LINE L1 6744 6922 -551 3 1164 741 314 118 13 chr4 76018812 76019125 -79610995 + Lx8 LINE L1 6967 7312 -161 3 1164 468 99 0 0 chr4 76019163 76019234 -79610886 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1164 209 98 24 0 chr4 76019833 76019874 -79610246 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1164 244 64 21 21 chr4 76019942 76019990 -79610130 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1164 446 304 59 0 chr4 76020939 76021074 -79609046 + ID_B1 SINE B4 82 224 0 3 145 441 217 54 0 chr4 76021673 76021765 -79608355 - URR1B DNA MER1_type 0 225 129 3 1165 700 189 68 8 chr4 76021985 76022118 -79608002 + B1_Mur1 SINE Alu 2 142 -7 3 1165 440 286 129 20 chr4 76022623 76023019 -79607101 + L1M5 LINE L1 4965 5403 -743 3 1165 252 234 149 0 chr4 76023011 76023105 -79607015 + L1M5 LINE L1 5627 5734 -439 3 1165 519 270 7 35 chr4 76024140 76024282 -79605838 + RSINE1 SINE B4 11 148 -17 4 1165 180 0 0 0 chr4 76024290 76024310 -79605810 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1165 588 29 0 0 chr4 76024394 76024464 -79605656 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 4 1165 307 371 63 22 chr4 76024494 76024764 -79605356 + B4A SINE B4 1 281 -11 4 1165 22 0 0 0 chr4 76024859 76024881 -79605239 + AT_rich Low_complexity Low_complexity 1 22 0 4 1165 571 284 58 22 chr4 76024963 76025100 -79605020 + RSINE1 SINE B4 3 144 -21 4 1165 561 55 0 0 chr4 76025107 76025180 -79604940 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1165 617 296 28 17 chr4 76027002 76027181 -79602939 + B3A SINE B2 3 183 -15 4 1165 535 185 18 18 chr4 76027917 76028027 -79602093 + PB1D9 SINE Alu 11 120 0 4 1165 453 301 8 8 chr4 76028111 76028235 -79601885 + B1F2 SINE Alu 13 136 -13 4 1165 504 0 0 0 chr4 76028237 76028293 -79601827 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 5 1165 403 250 80 0 chr4 76028582 76028682 -79601438 - PB1D10 SINE Alu -9 108 1 5 1165 716 152 89 45 chr4 76028736 76028915 -79601205 + B2_Mm2 SINE B2 1 187 -8 5 1165 439 171 19 0 chr4 76030677 76030782 -79599338 + GA-rich Low_complexity Low_complexity 3 109 0 5 1165 1973 150 110 0 chr4 76030796 76031150 -79598970 - Lx4A LINE L1 -9 7049 6657 5 1165 306 337 23 0 chr4 76031151 76031179 -79598941 + B4 SINE B4 58 87 -205 5 1165 410 279 59 59 chr4 76031179 76031297 -79598823 + B1F2 SINE Alu 3 120 0 5 1165 358 287 11 11 chr4 76031300 76031395 -79598725 + GA-rich Low_complexity Low_complexity 1 95 0 5 1165 979 184 85 24 chr4 76032419 76032630 -79597490 + URR1B DNA MER1_type 1 224 -1 5 1165 273 29 0 0 chr4 76034952 76034986 -79595134 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 5 1165 252 0 0 0 chr4 76035058 76035086 -79595034 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1165 323 179 0 35 chr4 76035541 76035628 -79594492 + A-rich Low_complexity Low_complexity 1 84 0 6 1165 440 0 0 35 chr4 76036069 76036126 -79593994 + (TAA)n Simple_repeat Simple_repeat 1 55 0 6 1165 239 309 14 14 chr4 76036637 76036706 -79593414 - L2c LINE L2 -60 3327 3259 6 1165 201 175 0 0 chr4 76038396 76038436 -79591684 + (TTG)n Simple_repeat Simple_repeat 3 42 0 6 1165 833 176 0 6 chr4 76040127 76040304 -79589816 + GA-rich Low_complexity Low_complexity 3 178 0 6 1165 1498 236 29 32 chr4 76040319 76040661 -79589459 + ORR1B2 LTR MaLR 26 366 -1 6 1165 333 0 0 0 chr4 76043579 76043616 -79586504 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1165 1116 252 52 95 chr4 76043616 76043984 -79586136 + ORR1E LTR MaLR 3 354 -5 6 1165 278 62 42 0 chr4 76044051 76044099 -79586021 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 6 1165 264 342 26 26 chr4 76044104 76044218 -79585902 - PB1D10 SINE Alu 0 117 4 7 1165 527 267 7 7 chr4 76044382 76044529 -79585591 - B1_Mur1 SINE Alu -1 148 2 7 1165 374 294 14 5 chr4 76044660 76044766 -79585354 + B3A SINE B2 63 168 -48 7 1165 249 108 0 0 chr4 76044768 76044805 -79585315 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1165 283 192 14 0 chr4 76044986 76045059 -79585061 + (TTTG)n Simple_repeat Simple_repeat 3 76 0 7 1165 581 258 103 16 chr4 76045100 76045315 -79584805 - MTE2a LTR MaLR 0 419 187 7 1165 2083 309 74 50 chr4 76045404 76046489 -79583631 + Lx8 LINE L1 6095 7205 -268 7 1165 314 319 152 0 chr4 76046545 76046683 -79583437 - MTE2a LTR MaLR -47 332 174 7 1165 24 32 0 0 chr4 76046834 76046865 -79583255 + AT_rich Low_complexity Low_complexity 1 31 0 7 1165 1045 78 21 0 chr4 76046867 76047009 -79583111 + B1_Mus2 SINE Alu 2 146 -1 7 1165 226 344 43 32 chr4 76047411 76047504 -79582616 + PB1D10 SINE Alu 4 97 -20 8 1165 239 295 169 21 chr4 76047669 76047811 -79582309 + RSINE1 SINE B4 1 163 -2 8 1165 314 285 53 68 chr4 76048582 76048714 -79581406 + L2c LINE L2 3248 3377 -10 8 1165 602 267 98 16 chr4 76048862 76049056 -79581064 + B3 SINE B2 1 210 -6 8 1165 507 259 36 0 chr4 76049096 76049208 -79580912 + B1_Mur2 SINE Alu 28 143 -6 8 1165 5287 21 15 0 chr4 76050063 76050678 -79579442 - L1Md_A LINE L1 0 6582 5959 8 1165 416 169 128 13 chr4 76052095 76052173 -79577947 - 5S rRNA rRNA -32 89 3 8 1165 21 0 0 0 chr4 76053082 76053103 -79577017 + GC_rich Low_complexity Low_complexity 1 21 0 8 1165 309 281 116 0 chr4 76053743 76053864 -79576256 + B1F SINE Alu 3 137 -12 8 1165 21 0 0 0 chr4 76053939 76053960 -79576160 + AT_rich Low_complexity Low_complexity 1 21 0 8 1165 213 175 37 24 chr4 76054034 76054116 -79576004 + (TA)n Simple_repeat Simple_repeat 2 84 0 9 1165 243 300 12 36 chr4 76054601 76054684 -79575436 + ID4 SINE ID 3 83 0 9 1165 241 351 83 8 chr4 76055107 76055239 -79574881 - MIRb SINE MIR -76 192 51 9 1165 337 296 10 0 chr4 76056495 76056593 -79573527 + ID_B1 SINE B4 126 224 0 9 1165 1136 98 52 0 chr4 76056671 76056844 -79573276 - B2_Mm2 SINE B2 -12 183 2 9 1165 1898 184 38 3 chr4 76056922 76057287 -79572833 - ORR1C1 LTR MaLR 0 378 1 9 1165 180 77 0 0 chr4 76057508 76057534 -79572586 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1165 252 0 0 0 chr4 76057826 76057854 -79572266 + (TTG)n Simple_repeat Simple_repeat 2 29 0 9 1165 975 288 36 11 chr4 76058065 76058342 -79571778 + MTEb LTR MaLR 92 375 -4 9 1165 558 0 0 0 chr4 76058722 76058784 -79571336 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1165 271 342 24 95 chr4 76058949 76059117 -79571003 - LTR78 LTR ERV1 -806 498 343 1 1165 695 83 0 69 chr4 76059155 76059285 -79570835 - Lx LINE L1 -1 6653 6533 1 1165 1247 220 118 3 chr4 76059294 76059590 -79570530 - MTD LTR MaLR -81 338 9 1 1165 267 83 0 48 chr4 76060025 76060088 -79570032 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 1 1165 302 287 114 65 chr4 76060095 76060218 -79569902 - ID_B1 SINE B4 -7 217 89 1 1165 773 263 103 61 chr4 76062232 76062592 -79567528 + MTEa LTR MaLR 1 375 -4 1 1165 228 237 35 142 chr4 76062868 76062981 -79567139 + RMER15 LTR ERVL 6 106 -469 1 1165 352 299 145 11 chr4 76063073 76063259 -79566861 + RMER15 LTR ERVL 365 575 0 1 1165 349 304 75 45 chr4 76064025 76064225 -79565895 + L2 LINE L2 2749 2954 -465 1 1165 410 252 65 9 chr4 76066042 76066150 -79563970 + MLT1A LTR MaLR 261 374 0 1 1165 2174 281 43 15 chr4 76067105 76067849 -79562271 + Lx9 LINE L1 6421 7185 -459 1 1165 261 0 0 0 chr4 76067849 76067878 -79562242 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1165 343 324 68 21 chr4 76068069 76068261 -79561859 - MIR SINE MIR -59 203 3 1 1165 1069 163 5 21 chr4 76069542 76069730 -79560390 + URR1A DNA MER1_type 6 190 -36 1 1165 2755 106 101 2 chr4 76069730 76070157 -79559963 + Lx3A LINE L1 6506 6974 -7 1 1165 240 114 0 0 chr4 76070206 76070241 -79559879 + URR1A DNA MER1_type 189 223 -3 1 1165 240 322 11 11 chr4 76070305 76070393 -79559727 + GA-rich Low_complexity Low_complexity 4 91 0 1 1165 209 189 38 0 chr4 76071355 76071408 -79558712 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1165 1714 55 4 3 chr4 76071746 76071984 -79558136 - L1Md_F3 LINE L1 -482 6102 5879 1 1165 3532 59 26 2 chr4 76071984 76072439 -79557681 + L1Md_F3 LINE L1 6105 6570 -14 1 1165 335 119 0 15 chr4 76072912 76072980 -79557140 + (TTG)n Simple_repeat Simple_repeat 3 69 0 1 1165 470 289 223 58 chr4 76072980 76073010 -79557110 + MTD LTR MaLR 18 47 -372 1 1165 3870 133 14 110 chr4 76073010 76073840 -79556280 + RMER17A LTR ERVK 1 751 0 1 1165 470 289 223 58 chr4 76073840 76074154 -79555966 + MTD LTR MaLR 48 419 0 1 1165 258 32 0 0 chr4 76074757 76074788 -79555332 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1165 296 265 0 78 chr4 76074921 76075011 -79555109 - MIRb SINE MIR -59 209 127 1 1165 672 331 49 52 chr4 76075011 76075298 -79554822 + B4A SINE B4 7 292 0 1 1165 28 48 0 0 chr4 76077194 76077236 -79552884 + AT_rich Low_complexity Low_complexity 1 42 0 1 1165 337 258 44 22 chr4 76077425 76077516 -79552604 + PB1D10 SINE Alu 13 105 -12 1 1165 384 207 0 0 chr4 76077516 76077632 -79552488 + CT-rich Low_complexity Low_complexity 1 116 0 1 1165 30 0 0 0 chr4 76077690 76077720 -79552400 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 759 209 0 14 chr4 76077818 76077959 -79552161 + B1_Mur1 SINE Alu 10 148 -1 1 1165 918 218 62 38 chr4 76078392 76078602 -79551518 + B3 SINE B2 2 216 0 1 1165 241 265 157 0 chr4 76079412 76079495 -79550625 + PB1D9 SINE Alu 18 113 -7 1 1165 192 97 0 0 chr4 76079533 76079564 -79550556 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1165 254 274 52 52 chr4 76080170 76080247 -79549873 + ID4_ SINE ID 2 78 -5 1 1165 510 46 0 0 chr4 76080991 76081056 -79549064 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1165 281 196 194 61 chr4 76081081 76081179 -79548941 + RSINE1 SINE B4 16 126 -39 1 1165 216 0 0 0 chr4 76081535 76081559 -79548561 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1165 429 312 83 0 chr4 76082692 76082836 -79547284 + MER3 DNA MER1_type 1 156 -53 1 1165 611 273 13 0 chr4 76085658 76085808 -79544312 + ID_B1 SINE B4 73 224 0 1 1165 273 188 0 0 chr4 76087296 76087381 -79542739 + T-rich Low_complexity Low_complexity 1 85 0 1 1165 196 319 11 57 chr4 76087505 76087644 -79542476 + MIRb SINE MIR 125 253 -15 1 1165 789 181 178 16 chr4 76087881 76088072 -79542048 - URR1A DNA MER1_type 0 226 5 1 1165 734 64 9 0 chr4 76090388 76090497 -79539623 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 1 1165 24 0 0 0 chr4 76092633 76092657 -79537463 + AT_rich Low_complexity Low_complexity 1 24 0 1 1165 188 189 0 36 chr4 76093646 76093701 -79536419 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1 1165 248 203 0 28 chr4 76095778 76095849 -79534271 + CT-rich Low_complexity Low_complexity 2 70 0 1 1165 192 77 0 0 chr4 76095929 76095955 -79534165 + (CTG)n Simple_repeat Simple_repeat 2 27 0 1 1165 369 0 0 0 chr4 76096541 76096582 -79533538 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1165 405 0 0 0 chr4 76096582 76096626 -79533494 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1165 386 38 0 19 chr4 76096673 76096726 -79533394 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1165 218 228 52 17 chr4 76098754 76098812 -79531308 + MIR3 SINE MIR 138 197 -11 1 1165 375 280 40 0 chr4 76099035 76099135 -79530985 - PB1D10 SINE Alu -13 104 1 1 1165 638 268 0 7 chr4 76100791 76100930 -79529190 + B1_Mur1 SINE Alu 12 149 0 1 1165 241 217 19 202 chr4 76101214 76101318 -79528802 - RSINE1 SINE B4 -79 86 2 1 1165 420 277 78 28 chr4 76101368 76101509 -79528611 - RSINE1 SINE B4 -16 149 2 1 1165 235 227 132 29 chr4 76104232 76104300 -79525820 - ID4_ SINE ID -4 79 5 1 1165 465 237 7 73 chr4 76104950 76105100 -79525020 + B1_Mur2 SINE Alu 1 140 -9 1 1165 289 291 105 33 chr4 76105205 76105358 -79524762 + MER5B DNA MER1_type 3 166 -12 1 1165 192 40 0 0 chr4 76106845 76106870 -79523250 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1165 427 33 16 16 chr4 76108365 76108427 -79521693 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 1 1165 219 36 0 0 chr4 76108732 76108760 -79521360 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1165 333 0 0 0 chr4 76108760 76108797 -79521323 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1165 257 311 72 45 chr4 76109755 76109866 -79520254 + L2c LINE L2 3274 3387 0 1 1165 189 385 22 11 chr4 76111148 76111240 -79518880 + MIRb SINE MIR 89 181 -87 1 1165 354 286 80 20 chr4 76111963 76112113 -79518007 + MIRb SINE MIR 45 203 -65 1 1165 815 308 137 32 chr4 76112190 76112204 -79517916 + MTE2a LTR MaLR 1 14 -405 1 1165 216 0 0 0 chr4 76112204 76112228 -79517892 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1165 1103 252 103 25 chr4 76112228 76112592 -79517528 + MTE2a LTR MaLR 15 418 -1 1 1165 546 16 0 0 chr4 76112780 76112843 -79517277 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1 1165 387 0 0 0 chr4 76112846 76112889 -79517231 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1165 550 118 10 0 chr4 76112923 76113025 -79517095 + Lx2 LINE L1 6895 6997 0 1 1165 317 28 0 0 chr4 76113033 76113069 -79517051 - L1_Mus1 LINE L1 -134 6433 6398 1 1165 772 80 0 0 chr4 76113069 76113181 -79516939 + L1_Mus1 LINE L1 6454 6565 -2 1 1165 4210 125 8 12 chr4 76113271 76113933 -79516187 - Lx LINE L1 -18 6636 5978 1 1165 383 297 40 0 chr4 76113937 76114038 -79516082 + B1F SINE Alu 24 128 -21 1 1165 23 33 0 0 chr4 76115013 76115043 -79515077 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 26 0 0 0 chr4 76115099 76115125 -79514995 + AT_rich Low_complexity Low_complexity 1 26 0 1 1165 22 0 0 0 chr4 76115192 76115214 -79514906 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 305 298 34 26 chr4 76116772 76116889 -79513231 - PB1D9 SINE Alu -2 118 1 1 1165 284 312 20 51 chr4 76117635 76117733 -79512387 - L2c LINE L2 0 3387 3293 1 1165 25 0 0 0 chr4 76117787 76117812 -79512308 + AT_rich Low_complexity Low_complexity 1 25 0 1 1165 285 361 10 0 chr4 76118118 76118215 -79511905 - PB1D10 SINE Alu -9 108 11 1 1165 818 169 12 0 chr4 76118369 76118529 -79511591 + GA-rich Low_complexity Low_complexity 4 165 0 1 1165 492 256 78 23 chr4 76118867 76118995 -79511125 + RSINE1 SINE B4 26 160 -5 1 1165 642 95 0 0 chr4 76119872 76119967 -79510153 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 1165 326 37 0 0 chr4 76119993 76120047 -79510073 - L1_Mus4 LINE L1 -1 6635 6582 1 1165 424 326 133 11 chr4 76120061 76120241 -79509879 - B3 SINE B2 -1 215 14 1 1165 1203 296 54 3 chr4 76122941 76123290 -79506830 + MTE2b LTR MaLR 3 369 -10 1 1165 342 321 11 74 chr4 76123612 76123787 -79506333 + RSINE1 SINE B4 2 165 0 1 1165 657 209 57 17 chr4 76124817 76124992 -79505128 + Lx9 LINE L1 7284 7465 -179 1 1165 882 245 35 41 chr4 76125113 76125454 -79504666 - L1_Rod LINE L1 -2918 2929 2591 1 1165 4126 272 58 65 chr4 76125469 76127548 -79502572 + L1_Rod LINE L1 2931 4994 -853 1 1165 267 31 0 0 chr4 76127652 76127684 -79502436 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1165 574 252 18 83 chr4 76128568 76128737 -79501383 + RSINE1 SINE B4 4 161 -4 1 1165 975 104 0 0 chr4 76128839 76129003 -79501117 + (TC)n Simple_repeat Simple_repeat 1 164 0 1 1165 182 224 100 33 chr4 76129864 76129924 -79500196 + L3 LINE CR1 2843 2906 -1583 1 1165 23 54 0 0 chr4 76130330 76130367 -79499753 + AT_rich Low_complexity Low_complexity 1 37 0 1 1165 339 137 0 0 chr4 76132912 76132985 -79497135 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1165 540 95 0 0 chr4 76132985 76133069 -79497051 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1165 483 48 0 0 chr4 76133138 76133200 -79496920 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 1 1165 1024 284 42 82 chr4 76133256 76133659 -79496461 + Lx7 LINE L1 6137 6523 -1173 1 1165 261 0 0 0 chr4 76135587 76135616 -79494504 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1165 253 197 13 13 chr4 76136067 76136144 -79493976 + CT-rich Low_complexity Low_complexity 3 79 0 1 1165 421 147 39 26 chr4 76136175 76136252 -79493868 - B1F2 SINE Alu -23 126 49 1 1165 1836 69 31 48 chr4 76136300 76136591 -79493529 + L1_Mus3 LINE L1 6347 6632 -6 1 1165 378 0 0 0 chr4 76137092 76137134 -79492986 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1165 372 94 0 0 chr4 76137257 76137310 -79492810 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1165 324 274 12 0 chr4 76138000 76138084 -79492036 - ID_B1 SINE B4 -7 217 133 2 1165 35 0 0 0 chr4 76138129 76138164 -79491956 + AT_rich Low_complexity Low_complexity 1 35 0 2 1165 641 13 13 0 chr4 76138499 76138577 -79491543 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 2 1165 368 0 43 0 chr4 76138681 76138728 -79491392 + (CACAA)n Simple_repeat Simple_repeat 2 50 0 2 1165 204 236 33 33 chr4 76139503 76139595 -79490525 + (TTAA)n Simple_repeat Simple_repeat 2 93 0 2 1165 30 0 0 0 chr4 76139771 76139801 -79490319 + AT_rich Low_complexity Low_complexity 1 30 0 2 1165 952 164 0 0 chr4 76139828 76139974 -79490146 - B1_Mm SINE Alu 0 147 2 2 1165 279 71 0 0 chr4 76139980 76140022 -79490098 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1165 789 213 0 0 chr4 76140391 76140532 -79489588 + B1_Mus1 SINE Alu 6 146 -2 2 1165 545 226 0 0 chr4 76140577 76140692 -79489428 + B2_Mm2 SINE B2 3 117 -78 2 1165 229 229 42 14 chr4 76140749 76140820 -79489300 + L1M3 LINE L1 3484 3556 -2584 2 1165 239 264 13 40 chr4 76141141 76141216 -79488904 - RMER1C Other Other -152 1190 1118 2 1165 2501 320 59 6 chr4 76141168 76142156 -79487964 - Lx8 LINE L1 -197 7276 6237 2 1165 4746 74 17 45 chr4 76142162 76142857 -79487263 + L1Md_F2 LINE L1 5907 6582 0 2 1165 342 0 0 0 chr4 76142877 76142915 -79487205 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1165 1359 241 51 37 chr4 76143331 76143740 -79486380 + MTD LTR MaLR 3 417 -2 2 1165 440 240 89 44 chr4 76143789 76143924 -79486196 + Lx8 LINE L1 6189 6329 -1144 2 1165 495 326 61 0 chr4 76143950 76144097 -79486023 + B3 SINE B2 2 157 -59 2 1165 378 0 0 0 chr4 76144097 76144139 -79485981 + (CATA)n Simple_repeat Simple_repeat 3 44 0 2 1165 325 285 67 83 chr4 76144139 76144171 -79485949 + B2_Mm2 SINE B2 149 178 -17 2 1165 411 338 14 0 chr4 76144196 76144338 -79485782 + Lx8 LINE L1 6335 6478 -995 2 1165 647 247 11 45 chr4 76144357 76144535 -79485585 + Lx8 LINE L1 6602 6773 -700 2 1165 914 243 95 37 chr4 76144581 76144854 -79485266 + B4 SINE B4 1 289 -3 2 1165 326 325 12 0 chr4 76145580 76145663 -79484457 - L2b LINE L2 -3 3372 3289 2 1165 219 270 90 51 chr4 76145827 76145905 -79484215 - ID2 SINE ID 0 83 3 2 1165 763 339 122 21 chr4 76146008 76146705 -79483415 - MER97b DNA MER1_type? -284 769 3 2 1165 606 314 73 34 chr4 76147275 76147658 -79482462 - MLT2B4 LTR ERVL -40 374 1 2 1165 297 381 73 13 chr4 76147671 76147985 -79482135 - L2b LINE L2 -830 2589 2257 2 1165 184 286 12 49 chr4 76148616 76148697 -79481423 + L4 LINE RTE 1715 1792 -237 2 1165 668 255 20 13 chr4 76149644 76149795 -79480325 + B3 SINE B2 40 191 -25 2 1166 1269 109 22 0 chr4 76153766 76153950 -79476170 - B2_Mm2 SINE B2 -6 189 2 2 1166 314 226 0 46 chr4 76154693 76154758 -79475362 - L1M4 LINE L1 -353 5821 5760 2 1166 3471 42 16 5 chr4 76154758 76155194 -79474926 - L1Md_F3 LINE L1 -2 6582 6142 2 1166 1149 75 0 0 chr4 76155195 76155341 -79474779 - B1_Mus2 SINE Alu 0 147 2 2 1166 1273 80 0 0 chr4 76155470 76155633 -79474487 - L1_Mm LINE L1 -307 5576 5414 2 1166 746 170 54 0 chr4 76155628 76155775 -79474345 + L1_Mur1 LINE L1 4602 4756 -1130 2 1166 997 163 116 15 chr4 76155782 76155981 -79474139 - URR1B DNA MER1_type -4 221 3 2 1166 189 0 0 0 chr4 76156735 76156756 -79473364 + (CAA)n Simple_repeat Simple_repeat 3 23 0 2 1166 249 33 0 0 chr4 76158156 76158186 -79471934 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 1166 21 0 0 0 chr4 76158453 76158474 -79471646 + AT_rich Low_complexity Low_complexity 1 21 0 2 1166 240 367 30 10 chr4 76160444 76160543 -79469577 - PB1D10 SINE Alu -15 102 2 2 1166 200 34 0 33 chr4 76161080 76161110 -79469010 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1166 1831 108 3 0 chr4 76161110 76161398 -79468722 - MusHAL1 LINE L1 -604 2108 1820 2 1166 3574 168 57 27 chr4 76161397 76162094 -79468026 + Lx2B LINE L1 6282 6999 -1 2 1166 215 322 0 13 chr4 76162168 76162255 -79467865 - MIR SINE MIR -3 265 176 2 1166 275 351 9 0 chr4 76162446 76162560 -79467560 + PB1D10 SINE Alu 2 116 -1 2 1166 225 233 27 0 chr4 76164485 76164558 -79465562 + (TTTA)n Simple_repeat Simple_repeat 4 78 0 2 1166 268 104 0 29 chr4 76164566 76164635 -79465485 - MT2A LTR ERVL -2 531 465 2 1166 234 182 53 8 chr4 76164643 76164776 -79465344 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 2 1166 315 0 0 0 chr4 76164798 76164833 -79465287 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 1166 279 0 0 0 chr4 76165863 76165894 -79464226 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1166 207 0 0 0 chr4 76166352 76166375 -79463745 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1166 852 264 40 0 chr4 76167089 76167290 -79462830 + B3 SINE B2 7 215 -1 2 1166 321 285 140 34 chr4 76167572 76167750 -79462370 + L3b LINE CR1 118 314 -168 2 1166 181 212 42 70 chr4 76168074 76168145 -79461975 + L3 LINE CR1 4185 4253 -236 2 1166 261 0 0 0 chr4 76169209 76169238 -79460882 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1166 303 85 0 0 chr4 76169238 76169284 -79460836 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1166 1823 222 52 151 chr4 76170523 76171019 -79459101 + RMER15 LTR ERVL 1 429 -146 2 1166 341 22 22 0 chr4 76171019 76171065 -79459055 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1166 1823 222 52 151 chr4 76171065 76171204 -79458916 + RMER15 LTR ERVL 430 572 -3 2 1166 479 288 29 59 chr4 76172347 76172517 -79457603 + RSINE1 SINE B4 1 165 0 2 1166 222 91 0 0 chr4 76172526 76172559 -79457561 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1166 3427 286 103 132 chr4 76172635 76173022 -79457098 + Tigger1 DNA MER2_type 2 415 -2003 2 1166 323 350 0 14 chr4 76173022 76173167 -79456953 + B1F SINE Alu 4 146 -3 2 1166 3427 286 103 132 chr4 76173167 76173191 -79456929 + Tigger1 DNA MER2_type 416 422 -1996 2 1166 254 29 0 28 chr4 76173191 76173227 -79456893 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1166 3427 286 103 132 chr4 76173227 76175298 -79454822 + Tigger1 DNA MER2_type 423 2413 -5 2 1166 326 323 51 29 chr4 76175319 76175334 -79454786 - B1F SINE Alu -1 148 9 2 1166 498 271 8 33 chr4 76175334 76175456 -79454664 - ID_B1 SINE B4 -16 208 90 2 1166 298 254 0 40 chr4 76175767 76175841 -79454279 - PB1D10 SINE Alu 0 117 47 2 1166 214 312 88 31 chr4 76176800 76176959 -79453161 + MIRc SINE MIR 99 266 -2 2 1166 348 24 0 0 chr4 76177219 76177260 -79452860 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1166 254 381 58 49 chr4 76177342 76177568 -79452552 + MIRc SINE MIR 22 249 -13 2 1166 1020 126 103 0 chr4 76179824 76179999 -79450121 + B2_Mm1t SINE B2 1 193 0 2 1166 477 64 39 0 chr4 76180052 76180130 -79449990 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1166 315 0 0 0 chr4 76180450 76180485 -79449635 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1166 254 276 135 49 chr4 76180542 76180786 -79449334 + L1ME3B LINE L1 5752 6016 -224 2 1166 385 164 71 24 chr4 76180928 76181097 -79449023 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1166 23 0 0 0 chr4 76181098 76181121 -79448999 + AT_rich Low_complexity Low_complexity 1 23 0 2 1166 5435 79 3 12 chr4 76181361 76182119 -79448001 + L1Md_F2 LINE L1 5831 6581 -1 2 1166 270 57 57 0 chr4 76182125 76182178 -79447942 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 1166 521 342 70 63 chr4 76183333 76183617 -79446503 + B4A SINE B4 7 292 0 2 1166 236 0 0 81 chr4 76183701 76183738 -79446382 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1166 1804 251 61 76 chr4 76183868 76184410 -79445710 + RMER5 LTR ERV1 1 534 0 2 1166 308 330 28 0 chr4 76185047 76185153 -79444967 - MTD LTR MaLR -310 109 1 2 1166 264 172 0 0 chr4 76185485 76185543 -79444577 + GA-rich Low_complexity Low_complexity 2 59 0 2 1166 3612 19 21 0 chr4 76185693 76186119 -79444001 - L1_Mm LINE L1 -317 5566 5132 2 1166 295 95 0 0 chr4 76186117 76186153 -79443967 + L1_Mm LINE L1 5551 5586 -297 2 1166 7979 46 5 8 chr4 76186153 76187152 -79442968 + L1Md_F2 LINE L1 5587 6582 0 2 1166 265 265 47 38 chr4 76187185 76187291 -79442829 + PB1D10 SINE Alu 1 107 -10 2 1166 351 0 0 0 chr4 76187679 76187718 -79442402 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1166 251 200 11 81 chr4 76189441 76189528 -79440592 - Lx8 LINE L1 -1270 6203 6123 2 1166 302 148 3 5 chr4 76189528 76189579 -79440541 + B2_Mm2 SINE B2 17 66 -127 2 1166 180 77 0 0 chr4 76189711 76189737 -79440383 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1166 7240 37 2 0 chr4 76189744 76190612 -79439508 - L1Md_T LINE L1 0 6582 5713 2 1166 1242 323 104 69 chr4 76190613 76191554 -79438566 + Lx8 LINE L1 6500 7473 0 2 1166 807 196 0 0 chr4 76191628 76191761 -79438359 + B1_Mus2 SINE Alu 8 140 -7 2 1166 180 0 0 0 chr4 76191788 76191808 -79438312 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1166 3322 287 62 14 chr4 76192244 76193220 -79436900 + Lx8 LINE L1 6247 7269 -204 2 1166 21 0 0 0 chr4 76193562 76193583 -79436537 + AT_rich Low_complexity Low_complexity 1 21 0 2 1166 730 225 14 7 chr4 76194013 76194152 -79435968 + RSINE1 SINE B4 2 141 -24 2 1166 275 0 29 0 chr4 76194152 76194187 -79435933 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1166 23 54 0 0 chr4 76194418 76194455 -79435665 + AT_rich Low_complexity Low_complexity 1 37 0 2 1166 604 327 93 12 chr4 76194926 76195183 -79434937 - B4A SINE B4 -14 278 1 2 1166 801 251 35 6 chr4 76195614 76195786 -79434334 + B3 SINE B2 3 179 -37 2 1166 378 0 0 0 chr4 76195791 76195833 -79434287 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1166 22 35 0 0 chr4 76195833 76195862 -79434258 + AT_rich Low_complexity Low_complexity 1 29 0 3 1166 448 264 19 0 chr4 76196200 76196306 -79433814 - PB1D9 SINE Alu -1 119 12 3 1166 907 266 105 6 chr4 76196627 76196960 -79433160 + ORR1D2 LTR MaLR 5 370 0 3 1166 404 123 14 0 chr4 76197070 76197143 -79432977 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 3 1166 818 186 14 0 chr4 76197147 76197287 -79432833 - B1_Mur4 SINE Alu -8 142 1 3 1166 264 200 0 0 chr4 76197287 76197347 -79432773 + CT-rich Low_complexity Low_complexity 3 62 0 3 1166 198 286 26 0 chr4 76197923 76198000 -79432120 - MIR SINE MIR -12 250 172 3 1166 289 281 158 0 chr4 76198341 76198455 -79431665 + Lx6 LINE L1 7076 7207 -253 3 1166 22 0 0 0 chr4 76198936 76198958 -79431162 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 21 0 0 0 chr4 76199186 76199207 -79430913 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 544 28 0 0 chr4 76199428 76199499 -79430621 + L1Md_A LINE L1 6511 6581 -1 3 1166 1258 326 66 58 chr4 76199565 76200852 -79429268 + L1_Rod LINE L1 1297 2586 -3261 3 1166 207 0 0 0 chr4 76200852 76200875 -79429245 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1166 1258 326 66 58 chr4 76200875 76201234 -79428886 + L1_Rod LINE L1 2587 2954 -2893 3 1166 384 281 22 0 chr4 76201253 76201342 -79428778 - B1_Mur2 SINE Alu -57 92 2 3 1166 637 268 63 14 chr4 76201367 76201485 -79428635 + L1M2 LINE L1 2955 3074 -3069 3 1166 243 0 0 0 chr4 76201485 76201512 -79428608 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1166 637 281 116 30 chr4 76201512 76202067 -79428053 + L1M2 LINE L1 3041 3700 -2443 3 1166 263 265 82 24 chr4 76202068 76202153 -79427967 + RSINE1 SINE B4 14 103 -62 3 1166 3231 68 2 5 chr4 76202494 76202909 -79427211 - Lx3_Mus LINE L1 0 5886 5473 3 1166 7685 80 38 9 chr4 76202909 76204013 -79426107 + Lx3_Mus LINE L1 5873 7008 -1 3 1166 482 314 67 82 chr4 76204109 76204376 -79425744 + B4A SINE B4 1 263 -29 3 1166 1188 73 0 0 chr4 76204407 76204584 -79425536 + (GA)n Simple_repeat Simple_repeat 1 177 0 3 1166 524 130 0 16 chr4 76204586 76204711 -79425409 + (CAGAGA)n Simple_repeat Simple_repeat 4 126 0 3 1166 3182 163 11 40 chr4 76204950 76205558 -79424562 + Lx2B LINE L1 6405 6995 -5 3 1166 357 24 0 0 chr4 76206211 76206253 -79423867 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1166 21 0 0 0 chr4 76206253 76206274 -79423846 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 182 150 125 0 chr4 76206332 76206372 -79423748 + MIR3 SINE MIR 118 162 -46 3 1166 354 344 20 59 chr4 76206444 76206648 -79423472 - Lx8 LINE L1 -78 7395 7200 3 1166 1128 371 64 44 chr4 76206762 76207595 -79422525 - Lx7 LINE L1 -687 7009 6161 3 1166 385 352 178 40 chr4 76207683 76207936 -79422184 + B4A SINE B4 1 288 -4 3 1166 505 292 43 7 chr4 76208052 76208190 -79421930 + B1_Mur1 SINE Alu 6 148 -1 3 1166 1172 75 0 0 chr4 76208227 76208374 -79421746 + B1_Mus1 SINE Alu 2 148 0 3 1166 581 238 26 67 chr4 76208550 76208744 -79421376 - B3A SINE B2 -10 188 3 3 1166 378 120 0 0 chr4 76208790 76208865 -79421255 + (A)n Simple_repeat Simple_repeat 1 75 0 3 1166 927 65 0 0 chr4 76209701 76209824 -79420296 + (GA)n Simple_repeat Simple_repeat 1 123 0 3 1166 374 322 166 22 chr4 76210577 76210758 -79419362 + LTR82B Low_complexity ERVL 368 574 -256 3 1166 264 59 0 0 chr4 76210806 76210840 -79419280 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1166 204 297 39 29 chr4 76211148 76211252 -79418868 + MIR SINE MIR 102 206 -56 3 1166 794 254 62 0 chr4 76211754 76211947 -79418173 - B3 SINE B2 -2 214 10 3 1166 433 330 66 94 chr4 76214420 76214858 -79415262 + L1ME1 LINE L1 5437 5862 -317 3 1166 231 201 0 29 chr4 76214864 76214917 -79415203 - ID4 SINE ID -67 85 37 3 1166 1368 274 109 30 chr4 76215375 76215970 -79414150 + Lx7 LINE L1 6671 7312 -384 3 1166 252 240 19 29 chr4 76216032 76216135 -79413985 + Lx7 LINE L1 7578 7679 -17 3 1166 1646 184 31 122 chr4 76216258 76216539 -79413581 + RMER4A LTR ERVK 33 320 -146 3 1166 612 73 0 0 chr4 76216539 76216621 -79413499 + (GGA)n Simple_repeat Simple_repeat 3 84 0 3 1166 1646 184 31 122 chr4 76216621 76216816 -79413304 + RMER4A LTR ERVK 321 466 0 3 1166 297 0 0 0 chr4 76217577 76217610 -79412510 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1166 1764 24 0 0 chr4 76217633 76217845 -79412275 - L1Md_T LINE L1 0 6582 6371 3 1166 1992 199 213 38 chr4 76219167 76219911 -79410209 + Lx7 LINE L1 6752 7626 -70 3 1166 563 283 30 107 chr4 76220785 76221149 -79408971 + RLTR15 LTR ERVK 5 340 -19 3 1166 195 186 0 0 chr4 76221200 76221243 -79408877 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1166 22 56 0 0 chr4 76221335 76221371 -79408749 + AT_rich Low_complexity Low_complexity 1 36 0 3 1166 23 33 0 0 chr4 76222166 76222196 -79407924 + AT_rich Low_complexity Low_complexity 1 30 0 3 1166 681 235 114 31 chr4 76222635 76222828 -79407292 - B3 SINE B2 -7 209 1 3 1166 477 0 0 0 chr4 76224251 76224304 -79405816 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1166 726 76 8 25 chr4 76224430 76224551 -79405569 - L1Md_F2 LINE L1 0 6582 6464 3 1166 211 296 152 36 chr4 76224637 76224749 -79405371 + MIRb SINE MIR 120 244 -24 3 1166 6378 55 21 17 chr4 76225040 76225907 -79404213 + Lx3_Mus LINE L1 6139 7008 -1 3 1166 233 244 51 13 chr4 76227441 76227520 -79402600 + CT-rich Low_complexity Low_complexity 3 84 0 3 1166 180 77 0 0 chr4 76227800 76227826 -79402294 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 3 1166 592 289 43 27 chr4 76228059 76228244 -79401876 - B3A SINE B2 -6 192 5 3 1166 310 266 185 38 chr4 76228505 76228689 -79401431 - L1M2 LINE L1 -552 5745 5535 3 1166 1410 339 50 8 chr4 76228695 76229548 -79400572 - L1M2 LINE L1 -850 5293 4405 3 1166 271 260 64 64 chr4 76229561 76229701 -79400419 - HAL1 LINE L1 -883 1624 1485 3 1166 456 335 71 27 chr4 76229846 76230183 -79399937 - HAL1 LINE L1 -1161 1346 995 3 1166 23 68 0 0 chr4 76230208 76230252 -79399868 + AT_rich Low_complexity Low_complexity 1 44 0 3 1166 778 117 13 13 chr4 76230542 76230698 -79399422 + (TCTCTG)n Simple_repeat Simple_repeat 2 157 0 3 1166 239 150 25 0 chr4 76230703 76230743 -79399377 + CT-rich Low_complexity Low_complexity 1 41 0 3 1166 609 124 0 0 chr4 76231119 76231216 -79398904 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 3 1166 25 31 0 0 chr4 76231617 76231649 -79398471 + AT_rich Low_complexity Low_complexity 1 32 0 3 1166 588 258 27 16 chr4 76232661 76232846 -79397274 - B3A SINE B2 -10 188 2 3 1166 234 0 0 0 chr4 76233232 76233258 -79396862 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1166 369 297 236 14 chr4 76234569 76234867 -79395253 + MLT1E1A LTR MaLR 266 673 -7 3 1166 32 0 0 0 chr4 76237036 76237068 -79393052 + AT_rich Low_complexity Low_complexity 1 32 0 3 1166 191 222 67 0 chr4 76238306 76238351 -79391769 - MIRm SINE MIR -125 151 104 3 1166 495 0 0 0 chr4 76238565 76238620 -79391500 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1166 319 68 0 17 chr4 76239211 76239271 -79390849 - L1Md_F2 LINE L1 -3 6579 6521 3 1166 186 43 0 0 chr4 76239365 76239388 -79390732 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 1166 235 228 0 17 chr4 76239396 76239454 -79390666 + CT-rich Low_complexity Low_complexity 4 60 0 3 1166 558 29 0 0 chr4 76240776 76240844 -79389276 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1166 469 385 13 0 chr4 76240891 76241047 -79389073 + RSINE1 SINE B4 8 165 0 3 1166 281 339 121 82 chr4 76241335 76241541 -79388579 - ID_B1 SINE B4 -7 217 4 3 1166 431 274 21 0 chr4 76241920 76242015 -79388105 + PB1D10 SINE Alu 7 103 -14 3 1166 225 0 0 0 chr4 76242015 76242040 -79388080 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1166 405 0 0 0 chr4 76242578 76242623 -79387497 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1166 441 0 0 0 chr4 76242623 76242671 -79387449 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1166 828 209 7 0 chr4 76243316 76243464 -79386656 - B1_Mur4 SINE Alu 0 150 2 3 1166 6811 85 55 18 chr4 76243465 76244602 -79385518 + L1_Mus3 LINE L1 5441 6614 -24 3 1166 3131 75 9 5 chr4 76244602 76245031 -79385089 + L1_Mus2 LINE L1 6136 6566 0 3 1166 687 260 116 5 chr4 76245077 76245301 -79384819 - Lx6 LINE L1 -30 7430 7182 3 1166 489 131 28 0 chr4 76245626 76245733 -79384387 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 3 1166 1175 194 5 5 chr4 76245778 76245990 -79384130 - ORR1B1 LTR MaLR -2 392 181 3 1166 5503 83 20 7 chr4 76246094 76246860 -79383260 + Lx3_Mus LINE L1 6226 7001 -8 3 1166 968 198 0 16 chr4 76247231 76247416 -79382704 - ORR1B1 LTR MaLR -212 182 1 3 1166 210 348 119 29 chr4 76247426 76247674 -79382446 - L2b LINE L2 -214 3161 2895 3 1166 32 26 0 0 chr4 76248361 76248400 -79381720 + AT_rich Low_complexity Low_complexity 1 39 0 3 1166 2157 285 73 23 chr4 76248544 76249319 -79380801 + Lx8 LINE L1 6660 7473 0 3 1166 4411 12 0 2 chr4 76249324 76249818 -79380302 + MT2_Mm LTR ERVL 1 493 0 3 1166 22 0 0 0 chr4 76249951 76249973 -79380147 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 407 329 100 0 chr4 76250623 76250763 -79379357 - RSINE1 SINE B4 0 165 12 3 1166 247 316 13 0 chr4 76251254 76251330 -79378790 + MER33 DNA MER1_type 4 80 -244 3 1166 1269 273 66 14 chr4 76251551 76251900 -79378220 - MTE2b LTR MaLR 0 379 13 3 1166 27 29 0 0 chr4 76251951 76251985 -79378135 + AT_rich Low_complexity Low_complexity 1 34 0 3 1166 180 0 0 0 chr4 76252057 76252077 -79378043 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1166 360 0 0 0 chr4 76253522 76253562 -79376558 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1166 316 331 87 13 chr4 76256244 76256319 -79373801 + MIRc SINE MIR 60 134 -134 3 1166 189 74 0 0 chr4 76256319 76256346 -79373774 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1166 316 331 87 13 chr4 76256346 76256420 -79373700 + MIRc SINE MIR 135 219 -49 3 1166 569 190 8 62 chr4 76257264 76257393 -79372727 - RMER1C Other Other 0 1342 1221 4 1166 909 261 78 58 chr4 76257494 76257889 -79372231 + RMER10A LTR ERVL 31 433 -9 4 1166 254 98 0 19 chr4 76258042 76258094 -79372026 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 4 1166 333 0 0 0 chr4 76258229 76258266 -79371854 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1166 378 0 0 0 chr4 76259032 76259074 -79371046 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1166 22 0 0 0 chr4 76259852 76259874 -79370246 + AT_rich Low_complexity Low_complexity 1 22 0 4 1166 274 335 139 48 chr4 76259906 76260201 -79369919 + ORR1E LTR MaLR 31 352 -7 4 1166 4080 60 50 7 chr4 76260373 76260910 -79369210 + LTRIS2 LTR ERV1 5 564 0 4 1166 1099 107 59 6 chr4 76261518 76261688 -79368432 + B2_Mm2 SINE B2 9 187 -8 4 1166 1578 92 128 0 chr4 76262030 76262281 -79367839 + L1_Mus3 LINE L1 6341 6623 -15 4 1166 276 30 0 0 chr4 76262281 76262314 -79367806 + (GGAAA)n Simple_repeat Simple_repeat 4 36 0 4 1166 330 247 0 24 chr4 76265081 76265164 -79364956 - Lx9 LINE L1 -973 6671 6591 4 1166 2837 241 71 40 chr4 76265140 76265945 -79364175 + Lx9 LINE L1 6656 7485 -159 4 1166 412 62 15 15 chr4 76265945 76266010 -79364110 + (TAA)n Simple_repeat Simple_repeat 1 65 0 4 1166 523 352 14 14 chr4 76266130 76266277 -79363843 - RSINE1 SINE B4 0 165 19 4 1166 219 36 0 0 chr4 76266944 76266972 -79363148 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1166 747 279 48 52 chr4 76270074 76270309 -79359811 + MTEa LTR MaLR 26 255 -124 4 1166 3370 134 11 30 chr4 76270309 76270869 -79359251 - Lx3A LINE L1 -3 6978 6430 4 1166 358 264 67 146 chr4 76270869 76270963 -79359157 + MTEa LTR MaLR 226 323 -36 4 1166 3872 302 78 82 chr4 76270985 76272533 -79357587 + MTEb-int LTR MaLR 1 1542 -38 4 1166 817 331 92 3 chr4 76272533 76272869 -79357251 + MTEb LTR MaLR 2 367 -12 4 1166 225 226 0 36 chr4 76272945 76273000 -79357120 - ORR1D2 LTR MaLR 0 370 318 4 1166 953 55 0 8 chr4 76273631 76273760 -79356360 + (TTCC)n Simple_repeat Simple_repeat 2 129 0 4 1166 34 72 0 0 chr4 76274367 76274436 -79355684 + AT_rich Low_complexity Low_complexity 1 69 0 4 1166 441 259 119 30 chr4 76275310 76275545 -79354575 - L1MD LINE L1 -1255 4891 4636 4 1166 258 116 0 0 chr4 76275634 76275677 -79354443 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1166 7585 108 1 3 chr4 76275716 76276840 -79353280 - Lx LINE L1 0 6654 5534 4 1166 447 348 67 52 chr4 76277342 76277609 -79352511 - B4 SINE B4 -16 276 6 4 1166 522 0 0 0 chr4 76279532 76279590 -79350530 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1166 189 132 0 0 chr4 76279726 76279764 -79350356 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 4 1166 537 36 36 0 chr4 76280795 76280879 -79349241 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 4 1166 426 20 0 0 chr4 76280982 76281033 -79349087 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1166 642 212 149 24 chr4 76281034 76281242 -79348878 + RMER13A LTR ERVK 233 466 -394 4 1166 203 341 73 0 chr4 76282102 76282184 -79347936 + L2a LINE L2 3339 3426 0 4 145 305 378 93 22 chr4 76283492 76283944 -79346176 - L2a LINE L2 -13 3413 2930 4 1167 568 296 20 7 chr4 76284050 76284196 -79345924 + B3A SINE B2 8 155 -43 4 1167 1730 305 97 22 chr4 76284192 76284271 -79345849 + MTB_Mm-int LTR MaLR 930 1013 -567 4 1167 278 26 0 25 chr4 76284271 76284311 -79345809 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1167 1730 305 97 22 chr4 76284311 76284830 -79345290 + MTB_Mm-int LTR MaLR 1014 1572 -8 4 1167 318 264 397 24 chr4 76284848 76285108 -79345012 + MTB_Mm LTR MaLR 13 369 -38 4 1167 236 300 29 0 chr4 76285390 76285435 -79344685 + LTR69 LTR ERVL 31 77 -511 4 1167 560 326 5 55 chr4 76285435 76285636 -79344484 + B3A SINE B2 1 191 -7 4 1167 976 355 36 32 chr4 76285648 76286117 -79344003 + LTR69 LTR ERVL 65 535 -53 4 1167 256 236 18 18 chr4 76286117 76286173 -79343947 + B4 SINE B4 4 59 -233 4 1167 342 344 101 24 chr4 76286631 76286929 -79343191 + L1M3de LINE L1 1084 1404 -5523 4 1167 282 422 22 6 chr4 76286992 76287173 -79342947 + L1M3de LINE L1 1494 1677 -5250 4 1167 745 251 58 136 chr4 76287195 76287606 -79342514 - MTE2a LTR MaLR 0 379 1 4 1167 795 291 107 101 chr4 76287618 76287657 -79342463 - MTE2a-int LTR MaLR -12 1246 1219 4 1167 1194 97 36 46 chr4 76287657 76287852 -79342268 - B2_Mm2 SINE B2 -1 194 2 4 1167 976 288 72 67 chr4 76287852 76288446 -79341674 - MTE2a-int LTR MaLR -113 1257 609 4 1167 477 0 0 0 chr4 76288936 76288989 -79341131 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1167 632 332 48 18 chr4 76288994 76289564 -79340556 + L1M3de LINE L1 1740 2336 -4591 4 1167 258 116 0 0 chr4 76289564 76289607 -79340513 + (GGA)n Simple_repeat Simple_repeat 3 45 0 4 1167 24 53 0 0 chr4 76289684 76289722 -79340398 + AT_rich Low_complexity Low_complexity 1 38 0 4 1167 3480 73 2 0 chr4 76289830 76290284 -79339836 + L1_Mus1 LINE L1 6112 6566 -1 4 1167 330 287 55 11 chr4 76290295 76290511 -79339609 + L1M3de LINE L1 2638 2761 -4246 4 1167 483 325 12 18 chr4 76290843 76291006 -79339114 + RSINE1 SINE B4 4 165 0 4 1167 1670 281 29 27 chr4 76291370 76291584 -79338536 - MTEa-int LTR MaLR -1098 482 273 4 1167 1039 30 0 0 chr4 76291584 76291718 -79338402 + L1Md_T LINE L1 6449 6582 0 4 1167 1670 281 29 27 chr4 76291718 76291979 -79338141 - MTEa-int LTR MaLR -1308 272 6 4 1167 1086 318 38 5 chr4 76291982 76292349 -79337771 - MTEa LTR MaLR 0 379 1 4 1167 519 347 90 40 chr4 76292388 76292934 -79337186 - L1MEg LINE L1 -5019 1065 493 4 1167 424 309 73 17 chr4 76293558 76293612 -79336508 - B3A SINE B2 -1 197 139 4 1167 405 0 0 0 chr4 76293612 76293657 -79336463 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1167 424 309 73 17 chr4 76293657 76293780 -79336340 - B3A SINE B2 -60 138 10 4 1167 360 0 0 0 chr4 76293794 76293834 -79336286 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 4 1167 520 307 47 0 chr4 76293837 76294029 -79336091 - B3 SINE B2 -12 204 4 4 1167 372 22 0 0 chr4 76294137 76294182 -79335938 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1167 250 408 34 0 chr4 76294267 76294414 -79335706 - B4A SINE B4 -140 152 1 4 1167 686 273 55 0 chr4 76294575 76294758 -79335362 - B3A SINE B2 -5 193 1 4 1167 4723 243 118 37 chr4 76294791 76295128 -79334992 + Lx9 LINE L1 5855 6272 -1372 4 1167 207 69 0 0 chr4 76295128 76295157 -79334963 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1167 4723 243 118 37 chr4 76295157 76296338 -79333782 + Lx9 LINE L1 6273 7500 -144 4 1167 603 40 0 0 chr4 76296338 76296412 -79333708 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1167 4723 243 118 37 chr4 76296412 76296549 -79333571 + Lx9 LINE L1 7501 7644 0 4 1167 619 323 5 30 chr4 76296575 76296776 -79333344 - B3 SINE B2 -20 196 1 4 1167 367 308 120 23 chr4 76296798 76297014 -79333106 - L1MD2 LINE L1 -18 6341 6105 4 1167 229 334 103 55 chr4 76297103 76297378 -79332742 - L1MD2 LINE L1 -376 5983 5694 4 1167 1249 150 18 5 chr4 76297378 76297599 -79332521 - URR1B DNA MER1_type -1 224 1 4 1167 229 334 103 55 chr4 76297599 76297633 -79332487 - L1MD2 LINE L1 -666 5693 5660 4 1167 384 331 19 81 chr4 76297695 76297856 -79332264 + B4A SINE B4 5 155 -137 4 1167 411 106 0 0 chr4 76300071 76300137 -79329983 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1167 189 154 0 0 chr4 76300602 76300641 -79329479 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1167 348 274 11 67 chr4 76300668 76300758 -79329362 - B4A SINE B4 -1 291 207 4 1167 2093 307 54 21 chr4 76300925 76301690 -79328430 - Lx7 LINE L1 -464 7232 6443 4 1167 252 339 76 55 chr4 76301692 76301982 -79328138 + Lx7 LINE L1 5876 6171 -1525 4 1167 25 0 0 0 chr4 76302005 76302030 -79328090 + AT_rich Low_complexity Low_complexity 1 25 0 4 1167 291 104 0 0 chr4 76302139 76302187 -79327933 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1167 706 120 161 19 chr4 76302189 76302350 -79327770 + Lx4B LINE L1 6869 7052 -6 4 1167 231 309 0 0 chr4 76302353 76302421 -79327699 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1167 380 349 94 45 chr4 76302544 76302745 -79327375 - B4A SINE B4 -78 214 4 4 1167 1722 100 0 0 chr4 76303608 76303849 -79326271 - L1_Mus4 LINE L1 -153 6483 6243 4 1167 481 322 38 78 chr4 76303849 76304142 -79325978 + MLT2D LTR ERVL 134 414 0 4 1167 195 290 28 65 chr4 76304299 76304406 -79325714 + MIRb SINE MIR 127 229 -39 4 1167 640 206 106 6 chr4 76304918 76305079 -79325041 - RLTR11A LTR ERVK -336 192 16 4 1167 447 35 0 0 chr4 76305510 76305567 -79324553 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1167 21 36 0 0 chr4 76305693 76305721 -79324399 + AT_rich Low_complexity Low_complexity 1 28 0 4 1167 1053 269 46 23 chr4 76306059 76306409 -79323711 + ORSL-2b DNA Tip100 35 392 -116 4 1167 227 315 14 0 chr4 76307685 76307758 -79322362 - MIR SINE MIR -110 152 79 4 1167 331 298 92 46 chr4 76308549 76308679 -79321441 - B1_Mur2 SINE Alu -8 141 6 4 1167 297 140 0 0 chr4 76308797 76308854 -79321266 + (CAA)n Simple_repeat Simple_repeat 1 57 0 4 1167 1607 256 54 5 chr4 76308855 76309244 -79320876 - MTD LTR MaLR 0 419 12 4 1167 22 35 0 0 chr4 76309275 76309304 -79320816 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 261 0 0 0 chr4 76310407 76310436 -79319684 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1167 346 406 20 10 chr4 76311178 76311382 -79318738 - MER58A DNA MER1_type -18 206 1 4 1167 27 62 0 0 chr4 76311478 76311526 -79318594 + AT_rich Low_complexity Low_complexity 1 48 0 4 1167 302 311 65 53 chr4 76311846 76312016 -79318104 - HAL1-3A_ME LINE L1 -401 2457 2286 4 1167 426 151 0 0 chr4 76312016 76312089 -79318031 + CT-rich Low_complexity Low_complexity 2 74 0 4 1167 1037 343 68 0 chr4 76312477 76312862 -79317258 + Lx8 LINE L1 6261 6671 -802 4 1167 466 235 70 27 chr4 76313033 76313166 -79316954 + Lx6 LINE L1 7181 7312 -148 4 1167 1323 19 0 0 chr4 76313166 76313320 -79316800 + (TTTCC)n Simple_repeat Simple_repeat 4 157 0 4 1167 466 231 72 29 chr4 76313320 76313332 -79316788 + Lx6 LINE L1 7313 7324 -136 4 1167 3681 82 4 0 chr4 76313376 76313867 -79316253 - L1_Mus1 LINE L1 -2 6565 6073 4 1167 288 333 0 11 chr4 76314274 76314368 -79315752 - BGLII_B LTR ERVK 0 553 461 4 1167 1513 199 141 13 chr4 76314458 76314935 -79315185 - BGLII_B LTR ERVK -6 435 19 4 1167 255 61 0 0 chr4 76314972 76315005 -79315115 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1167 415 307 75 33 chr4 76315357 76315569 -79314551 + L1M4 LINE L1 3627 3847 -2299 4 1167 929 228 16 0 chr4 76315859 76316043 -79314077 + B3 SINE B2 1 187 -29 4 1167 366 23 0 0 chr4 76316043 76316086 -79314034 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1167 242 273 45 18 chr4 76316162 76316274 -79313846 + L1MA9 LINE L1 5824 5938 -374 4 1167 338 298 78 78 chr4 76316626 76316779 -79313341 + LTR40a LTR ERVL 331 483 -36 4 1167 25 51 0 0 chr4 76318904 76318943 -79311177 + AT_rich Low_complexity Low_complexity 1 39 0 5 1167 383 0 0 21 chr4 76320829 76320877 -79309243 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 1167 977 130 0 0 chr4 76320877 76321023 -79309097 - B1_Mus1 SINE Alu -2 146 1 5 1167 918 119 219 16 chr4 76321339 76321526 -79308594 - URR1B DNA MER1_type 0 225 1 5 1167 1994 124 70 0 chr4 76322028 76322343 -79307777 + Lx LINE L1 6318 6654 0 5 1167 232 326 0 55 chr4 76322408 76322499 -79307621 - MTD LTR MaLR -152 267 182 5 1167 536 190 45 9 chr4 76322482 76322607 -79307513 - B1_Mus1 SINE Alu -1 149 7 5 1167 486 0 0 0 chr4 76323682 76323736 -79306384 + (CAA)n Simple_repeat Simple_repeat 3 56 0 5 1167 725 281 10 10 chr4 76324883 76325091 -79305029 - B3 SINE B2 -7 209 2 5 1167 301 262 202 29 chr4 76325558 76325731 -79304389 - MIR SINE MIR -55 207 5 5 1167 23 0 0 0 chr4 76325981 76326004 -79304116 + AT_rich Low_complexity Low_complexity 1 23 0 5 1167 820 139 0 16 chr4 76326735 76326918 -79303202 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1167 568 342 5 40 chr4 76327397 76327598 -79302522 + B3A SINE B2 4 197 -1 5 1167 1104 133 0 2 chr4 76327598 76327785 -79302335 - Lx3B LINE L1 -1224 5834 5652 5 1167 360 169 64 13 chr4 76327736 76327814 -79302306 + Lx3_Mus LINE L1 5796 5877 -1132 5 1167 586 198 20 0 chr4 76327805 76327938 -79302182 + Lx2B LINE L1 6372 6477 -523 5 1167 636 250 80 55 chr4 76328178 76328377 -79301743 + B3 SINE B2 1 204 -12 5 1167 186 71 0 0 chr4 76328982 76329010 -79301110 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 1167 196 320 154 19 chr4 76329073 76329229 -79300891 + MIRb SINE MIR 39 215 -53 5 1167 357 298 99 7 chr4 76330021 76330163 -79299957 + MER5A DNA MER1_type 4 158 -31 5 1167 426 337 40 55 chr4 76330482 76330577 -79299543 + MER58A DNA MER1_type 18 113 -111 5 1167 180 0 0 0 chr4 76330577 76330597 -79299523 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1167 426 337 40 55 chr4 76330597 76330702 -79299418 + MER58A DNA MER1_type 114 214 -10 5 1167 183 100 0 0 chr4 76331395 76331425 -79298695 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1167 2239 166 16 8 chr4 76333294 76333677 -79296443 - ORR1B1 LTR MaLR -8 386 1 5 1167 3408 240 61 19 chr4 76336498 76337427 -79292693 + Lx7 LINE L1 6729 7696 0 5 1167 3386 239 150 7 chr4 76340655 76341543 -79288577 + RMER1B Other Other 50 1064 -2 5 1167 7262 148 44 14 chr4 76342282 76343541 -79286579 + Lx2A LINE L1 5680 6976 -32 5 1167 404 117 0 13 chr4 76343542 76343620 -79286500 + Lx2A LINE L1 6931 7007 -1 5 1167 189 0 0 0 chr4 76343737 76343758 -79286362 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1167 3570 66 8 8 chr4 76344153 76344627 -79285493 + L1Md_F2 LINE L1 6097 6570 -12 5 1167 1236 39 0 0 chr4 76344907 76345061 -79285059 + (TCTA)n Simple_repeat Simple_repeat 3 156 0 5 1167 1282 310 100 15 chr4 76345124 76345743 -79284377 - Lx7 LINE L1 -209 7264 6587 5 1167 333 0 0 0 chr4 76345911 76345948 -79284172 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1167 572 97 11 0 chr4 76347299 76347392 -79282728 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 5 1167 921 9 0 0 chr4 76347445 76347551 -79282569 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 5 1167 4416 27 0 0 chr4 76349511 76350023 -79280097 - L1Md_T LINE L1 -201 6381 5870 5 1167 296 352 142 0 chr4 76350027 76350189 -79279931 + MIR SINE MIR 61 245 -17 5 1167 545 301 15 0 chr4 76350947 76351083 -79279037 - ID_B1 SINE B4 -6 218 81 5 1167 22 0 0 0 chr4 76352797 76352819 -79277301 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 1690 198 59 89 chr4 76354309 76354769 -79275351 - RLTR41 LTR ERV1 0 446 1 5 1167 378 0 0 0 chr4 76356796 76356838 -79273282 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1167 244 108 61 15 chr4 76357445 76357511 -79272609 + T-rich Low_complexity Low_complexity 2 70 0 5 1167 1620 105 32 20 chr4 76357517 76357769 -79272351 - L1Md_F2 LINE L1 -13 6569 6315 5 1167 1203 35 0 0 chr4 76357769 76357912 -79272208 + L1Md_F2 LINE L1 6144 6286 -296 5 1167 7331 122 4 4 chr4 76357910 76359676 -79270444 - L1_Mus4 LINE L1 -27 6609 4840 5 1167 1372 228 161 30 chr4 76359933 76360299 -79269821 + MTC LTR MaLR 8 421 0 5 1167 1968 188 44 12 chr4 76361139 76361638 -79268482 + RMER19B LTR ERVK 1 902 0 5 1167 238 259 0 0 chr4 76361649 76361703 -79268417 + MLT1J1 LTR MaLR 40 93 -351 5 1167 1073 310 81 0 chr4 76362219 76362516 -79267604 + MTE2b LTR MaLR 16 336 -43 5 1167 23 68 0 0 chr4 76362516 76362560 -79267560 + AT_rich Low_complexity Low_complexity 1 44 0 5 1167 2827 133 2 0 chr4 76362866 76363310 -79266810 - Lx LINE L1 -1 6653 6209 5 1167 1114 210 79 3 chr4 76365038 76365330 -79264790 + Lx9 LINE L1 7323 7636 -8 5 1167 214 308 62 25 chr4 76366134 76366214 -79263906 - ID SINE ID -140 84 2 5 1167 325 321 61 30 chr4 76366421 76366585 -79263535 + MER5A DNA MER1_type 1 169 -20 5 1167 355 238 170 37 chr4 76367246 76367434 -79262686 - CYRA11_Mm Unknown Y-chromosome -233 384 172 5 1167 772 162 7 0 chr4 76367293 76367435 -79262685 + URR1B DNA MER1_type 83 225 0 5 1167 835 256 128 55 chr4 76367677 76368020 -79262100 + ORR1D1 LTR MaLR 5 372 -2 5 1167 23 0 0 0 chr4 76368057 76368080 -79262040 + AT_rich Low_complexity Low_complexity 1 23 0 5 1167 27 29 0 0 chr4 76368173 76368207 -79261913 + AT_rich Low_complexity Low_complexity 1 34 0 5 1167 208 147 0 0 chr4 76368324 76368358 -79261762 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 5 1167 2217 309 87 21 chr4 76368381 76369410 -79260710 + Lx9 LINE L1 6375 7470 -174 5 1167 297 183 0 0 chr4 76369428 76369488 -79260632 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1167 386 372 0 0 chr4 76369702 76369839 -79260281 + Cheshire DNA MER1_type 131 267 -2153 5 1167 310 216 13 51 chr4 76369886 76369964 -79260156 + MER5A DNA MER1_type 2 76 -113 5 1167 875 39 8 23 chr4 76371511 76371644 -79258476 - L1Md_F3 LINE L1 -3 6581 6451 5 1167 35351 36 0 0 chr4 76374594 76380215 -79249905 + L1Md_T LINE L1 1 5589 -297 5 1167 8944 7 0 0 chr4 76380215 76381211 -79248909 + L1Md_T LINE L1 5590 6585 0 5 1167 441 0 0 0 chr4 76381403 76381452 -79248668 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 5 1167 529 272 98 77 chr4 76382195 76382482 -79247638 - MLT1A LTR MaLR 0 374 82 5 1167 304 333 38 76 chr4 76382893 76383130 -79246990 + L1MA7 LINE L1 2994 3221 -2922 5 1167 394 329 148 25 chr4 76383143 76383658 -79246462 + L1MA7 LINE L1 3278 3855 -2288 5 1167 559 327 36 24 chr4 76383782 76383948 -79246172 + B3A SINE B2 1 168 -30 5 1167 909 299 136 35 chr4 76383998 76385614 -79244506 + L1MA7 LINE L1 3956 5734 -557 5 1167 931 227 215 10 chr4 76385620 76385778 -79244342 - ORR1D2 LTR MaLR 0 370 168 5 1167 378 0 0 0 chr4 76385778 76385820 -79244300 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1167 931 227 215 10 chr4 76385820 76385968 -79244152 - ORR1D2 LTR MaLR -203 167 2 5 1167 446 285 137 27 chr4 76386111 76386403 -79243717 + L1MA7 LINE L1 5920 6243 -48 5 1167 437 0 19 0 chr4 76386947 76387000 -79243120 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1167 303 364 18 12 chr4 76387291 76387455 -79242665 - RSINE1 SINE B4 0 165 1 5 1167 7883 44 8 4 chr4 76387565 76388537 -79241583 - L1Md_F2 LINE L1 0 6582 5607 5 1167 209 163 20 0 chr4 76389042 76389091 -79241029 + (TAA)n Simple_repeat Simple_repeat 1 50 0 5 1167 27 73 0 0 chr4 76389955 76390010 -79240110 + AT_rich Low_complexity Low_complexity 1 55 0 5 1167 569 231 68 0 chr4 76390027 76390144 -79239976 - B3 SINE B2 -91 125 1 5 1167 311 357 78 29 chr4 76391281 76391523 -79238597 - LTR78 LTR ERV1 -38 1266 1013 5 1167 25 31 0 0 chr4 76392181 76392213 -79237907 + AT_rich Low_complexity Low_complexity 1 32 0 5 1167 182 365 74 9 chr4 76392469 76392577 -79237543 - MIRb SINE MIR -63 205 91 5 1167 1004 122 0 20 chr4 76392595 76392746 -79237374 + B1_Mus1 SINE Alu 1 148 0 5 1167 2278 43 27 0 chr4 76392941 76393240 -79236880 + IAPLTR2b LTR ERVK 1 307 -20 5 1167 450 83 0 0 chr4 76393923 76393995 -79236125 + (GTTTG)n Simple_repeat Simple_repeat 3 74 0 5 1167 266 22 0 42 chr4 76394076 76394124 -79235996 - L1Md_T LINE L1 0 6582 6537 5 1167 2187 61 0 0 chr4 76394123 76394400 -79235720 + L1Md_A LINE L1 6261 6537 -45 5 1167 232 260 58 102 chr4 76395213 76395350 -79234770 - MLT1-int LTR MaLR -1053 318 188 5 1167 3659 206 72 4 chr4 76398169 76398971 -79231149 + Lx6 LINE L1 4925 5784 -93 5 1167 4396 41 13 0 chr4 76398971 76399510 -79230610 + L1Md_F3 LINE L1 6024 6569 -15 5 1167 3659 177 6 2 chr4 76399510 76399648 -79230472 + Lx6 LINE L1 5785 6020 -1030 5 1167 5224 249 55 38 chr4 76399634 76400529 -79229591 + L1_Rod LINE L1 2526 3442 -2405 5 1167 3089 17 0 0 chr4 76400529 76400875 -79229245 + ORR1A0 LTR MaLR 1 346 0 5 1167 5224 249 55 38 chr4 76400875 76401845 -79228275 + L1_Rod LINE L1 3443 4424 -1423 5 1167 473 280 37 93 chr4 76401861 76402215 -79227905 + Lx9 LINE L1 5913 6246 -1398 5 1167 289 326 10 10 chr4 76402244 76402343 -79227777 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 5 1167 2561 253 50 30 chr4 76402395 76403004 -79227116 + Lx9 LINE L1 6828 7455 -189 5 1167 498 108 0 0 chr4 76403004 76403078 -79227042 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1167 2561 253 50 30 chr4 76403078 76403247 -79226873 + Lx9 LINE L1 7456 7622 -22 5 1167 369 0 0 0 chr4 76403386 76403427 -79226693 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1167 2329 28 7 7 chr4 76403506 76403792 -79226328 + L1Md_F2 LINE L1 6289 6574 -8 5 1167 340 226 113 0 chr4 76403936 76404042 -79226078 - Lx2B LINE L1 -13 6987 6870 5 1167 577 188 12 16 chr4 76404042 76404192 -79225928 - Lx2B LINE L1 -639 6361 6205 5 1167 327 327 18 18 chr4 76404610 76404722 -79225398 + MLT1A0 LTR MaLR 48 159 -206 5 1167 271 262 60 78 chr4 76404754 76404870 -79225250 + MLT1A0 LTR MaLR 283 396 -12 5 1167 444 51 0 0 chr4 76405268 76405327 -79224793 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1167 536 329 74 45 chr4 76405653 76405990 -79224130 + Lx9 LINE L1 7092 7438 -206 5 1167 344 22 22 0 chr4 76406011 76406056 -79224064 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1167 5137 99 47 9 chr4 76406212 76407159 -79222961 - L1_Mus4 LINE L1 0 6566 5593 6 1167 223 310 144 50 chr4 76408303 76408483 -79221637 + MIR SINE MIR 39 235 -27 6 1167 415 296 136 26 chr4 76408506 76408697 -79221423 + B3 SINE B2 1 212 -4 6 1167 2160 178 10 10 chr4 76408731 76409123 -79220997 - MTB_Mm LTR MaLR -13 394 3 6 1167 279 272 129 50 chr4 76409359 76409560 -79220560 + L3 LINE CR1 3325 3541 -948 6 1167 180 305 17 0 chr4 76410065 76410124 -79219996 - MIR SINE MIR -71 191 132 6 1167 1313 217 124 76 chr4 76412788 76413182 -79216938 + RLTR33 LTR ERVK 181 593 -85 6 1167 362 285 47 34 chr4 76414344 76414617 -79215503 - L1MA4 LINE L1 -31 6266 5998 6 145 239 261 222 5 chr4 76414873 76415058 -79215062 - L1MA7 LINE L1 -1 6290 6066 6 1168 417 70 0 0 chr4 76415179 76415236 -79214884 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1168 305 47 0 23 chr4 76415349 76415393 -79214727 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 1168 602 361 74 14 chr4 76417161 76417647 -79212473 - Lx8 LINE L1 -25 7448 6934 6 1168 5180 65 10 3 chr4 76417667 76418348 -79211772 - L1Md_F2 LINE L1 -2 6580 5895 6 1168 941 336 67 19 chr4 76418364 76418932 -79211188 - Lx8 LINE L1 -822 6651 6057 6 1168 1075 107 0 0 chr4 76419197 76419337 -79210783 + B1_Mus2 SINE Alu 1 140 -7 6 1168 272 83 0 20 chr4 76419337 76419386 -79210734 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1168 4892 195 55 13 chr4 76419475 76420477 -79209643 + Lx5 LINE L1 6007 7050 0 6 1168 456 302 53 13 chr4 76420471 76420699 -79209421 + L1_Mur3 LINE L1 2209 2445 -3435 6 1168 2293 244 13 22 chr4 76420700 76421307 -79208813 + Lx2B LINE L1 6359 7055 -3 6 1168 240 246 14 0 chr4 76421343 76421412 -79208708 + L1_Mur3 LINE L1 2435 2504 -3376 6 1168 551 233 158 0 chr4 76421412 76421558 -79208562 - URR1A DNA MER1_type -57 169 1 6 1168 263 330 22 11 chr4 76421558 76421644 -79208476 - ORR1E LTR MaLR -259 100 14 6 1168 213 39 0 0 chr4 76422137 76422163 -79207957 + (TATG)n Simple_repeat Simple_repeat 2 27 0 6 1168 217 241 0 0 chr4 76422477 76422535 -79207585 + A-rich Low_complexity Low_complexity 1 58 0 6 1168 817 305 118 20 chr4 76422572 76423398 -79206722 + L1_Rod LINE L1 1022 1932 -3915 6 1168 1680 317 142 8 chr4 76423441 76424089 -79206031 + Lx8 LINE L1 6328 7062 -411 6 1168 30 0 0 0 chr4 76424382 76424412 -79205708 + AT_rich Low_complexity Low_complexity 1 30 0 6 1168 1181 262 31 16 chr4 76424536 76424923 -79205197 + L1MA6 LINE L1 5548 5940 -360 6 1168 671 285 11 27 chr4 76426767 76426951 -79203169 - Lx8 LINE L1 -122 7351 7171 6 1168 988 228 74 15 chr4 76427148 76427487 -79202633 - L1_Mur3 LINE L1 -2292 3588 3230 6 1168 422 278 5 74 chr4 76427476 76427666 -79202454 - L1_Mur3 LINE L1 -3221 2659 2483 6 1168 741 308 5 28 chr4 76427686 76427903 -79202217 + Lx7 LINE L1 6423 6634 -1062 6 1168 949 85 3 2 chr4 76427903 76428045 -79202075 + B1_Mus2 SINE Alu 1 143 -6 6 1168 4588 41 43 0 chr4 76428045 76428607 -79201513 + L1Md_F2 LINE L1 5895 6480 -102 6 1168 29 98 0 0 chr4 76429704 76429796 -79200324 + AT_rich Low_complexity Low_complexity 1 92 0 6 1168 210 143 0 0 chr4 76431365 76431400 -79198720 + (GGAGAA)n Simple_repeat Simple_repeat 2 36 0 6 1168 25 0 0 0 chr4 76431789 76431814 -79198306 + AT_rich Low_complexity Low_complexity 1 25 0 6 1168 466 292 8 50 chr4 76431839 76431958 -79198162 + PB1D7 SINE Alu 1 114 -6 6 1168 25 51 0 0 chr4 76431996 76432035 -79198085 + AT_rich Low_complexity Low_complexity 1 39 0 6 1168 1134 90 12 18 chr4 76433973 76434143 -79195977 - L1_Mus1 LINE L1 0 6567 6399 6 1168 263 343 0 0 chr4 76434836 76434903 -79195217 + ID4 SINE ID 3 69 -14 6 1168 1871 60 4 28 chr4 76435013 76435268 -79194852 - L1_Mus1 LINE L1 0 6567 6319 6 1168 291 381 146 34 chr4 76436522 76436940 -79193180 - L2a LINE L2 -27 3399 2935 6 1168 357 116 0 0 chr4 76436997 76437066 -79193054 + (T)n Simple_repeat Simple_repeat 1 69 0 6 1168 1131 62 0 14 chr4 76437068 76437216 -79192904 - B1_Mus2 SINE Alu 0 147 2 6 1168 780 146 16 24 chr4 76437272 76437398 -79192722 + RMER13A LTR ERVK 1 125 -735 6 1168 683 332 26 0 chr4 76437836 76438026 -79192094 + B3 SINE B2 1 195 -21 6 1168 313 293 40 20 chr4 76438578 76438679 -79191441 - LTR40a LTR ERVL -294 225 123 6 1168 690 47 0 0 chr4 76438710 76438796 -79191324 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 1168 255 103 0 0 chr4 76438971 76439010 -79191110 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 1168 980 272 167 3 chr4 76439044 76439350 -79190770 + MTD LTR MaLR 56 411 -8 6 1168 22 56 0 0 chr4 76439588 76439624 -79190496 + AT_rich Low_complexity Low_complexity 1 36 0 6 1168 216 0 0 0 chr4 76440393 76440417 -79189703 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1168 192 152 0 0 chr4 76440417 76440450 -79189670 + (CG)n Simple_repeat Simple_repeat 1 33 0 6 1168 195 319 48 36 chr4 76441149 76441297 -79188823 + MIRb SINE MIR 54 203 -59 6 1168 342 0 0 0 chr4 76441417 76441455 -79188665 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1168 516 327 38 72 chr4 76441736 76442102 -79188018 + ORR1E LTR MaLR 3 369 -10 6 1168 566 317 37 74 chr4 76445976 76446191 -79183929 - B3A SINE B2 -5 211 5 6 1168 280 148 17 42 chr4 76446452 76446572 -79183548 + T-rich Low_complexity Low_complexity 3 119 0 6 1168 540 0 0 0 chr4 76446958 76447018 -79183102 + (GAA)n Simple_repeat Simple_repeat 2 61 0 6 1168 953 87 37 0 chr4 76447018 76447179 -79182941 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 6 1168 1200 69 0 0 chr4 76449211 76449370 -79180750 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 6 1168 31113 83 6 13 chr4 76450039 76455077 -79175043 + L1Md_F2 LINE L1 217 5431 -452 6 1168 2209 30 4 0 chr4 76455077 76455341 -79174779 + L1Md_F2 LINE L1 6318 6582 0 6 1168 2075 96 31 0 chr4 76455549 76455841 -79174279 + L1_Mus1 LINE L1 6267 6567 0 6 1168 508 323 41 16 chr4 76456270 76456485 -79173635 - B3A SINE B2 -4 212 4 6 1168 21 0 0 0 chr4 76459181 76459202 -79170918 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 395 261 116 0 chr4 76459944 76460143 -79169977 - Lx9 LINE L1 -17 7627 7406 6 1168 1416 242 9 9 chr4 76460146 76460476 -79169644 + Lx9 LINE L1 7070 7399 -245 6 1168 233 172 0 59 chr4 76460569 76460637 -79169483 + A-rich Low_complexity Low_complexity 2 65 0 6 1168 722 83 8 0 chr4 76460673 76460793 -79169327 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 1168 664 222 29 3 chr4 76461593 76461764 -79168356 + B3 SINE B2 2 186 -9 6 1168 3618 50 4 0 chr4 76463073 76463533 -79166587 - L1Md_F3 LINE L1 -406 6178 5717 6 1168 3045 50 11 0 chr4 76463533 76463913 -79166207 + L1Md_F3 LINE L1 6187 6570 -14 6 1168 503 389 16 0 chr4 76463922 76464115 -79166005 + MLT1F1 LTR MaLR 307 502 -67 6 1168 687 239 103 0 chr4 76464499 76464683 -79165437 - B3 SINE B2 -10 206 4 6 1168 351 245 50 25 chr4 76464751 76464910 -79165210 + (TATATG)n Simple_repeat Simple_repeat 3 165 0 6 1168 643 93 47 0 chr4 76466796 76466903 -79163217 + Lx2 LINE L1 6885 6996 -1 6 1168 27 29 0 0 chr4 76466917 76466951 -79163169 + AT_rich Low_complexity Low_complexity 1 34 0 6 1168 277 314 119 38 chr4 76466956 76467115 -79163005 - MER2 DNA MER2_type 0 345 174 6 1168 2014 244 74 54 chr4 76467134 76467785 -79162335 + RLTR40 LTR ERVK 21 684 -133 6 1168 378 0 0 0 chr4 76467803 76467845 -79162275 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1168 231 200 0 74 chr4 76467854 76467908 -79162212 + MTE2a LTR MaLR 196 245 -134 6 1168 485 58 14 0 chr4 76467909 76467978 -79162142 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1168 258 284 39 0 chr4 76467982 76468062 -79162058 - MER2 DNA MER2_type -236 109 21 6 1168 2121 192 11 46 chr4 76468126 76468562 -79161558 + MTC LTR MaLR 1 421 0 6 1168 232 365 63 101 chr4 76468564 76468651 -79161469 + MER21B LTR ERV1 13 93 -770 6 1168 1324 283 24 5 chr4 76468651 76469021 -79161099 - MTE2b LTR MaLR -2 377 1 6 1168 232 365 63 101 chr4 76469021 76469122 -79160998 + MER21B LTR ERV1 94 194 -669 6 1168 312 27 0 0 chr4 76470101 76470138 -79159982 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1168 5143 87 24 4 chr4 76471674 76472416 -79157704 - L1_Mur1 LINE L1 -480 5406 4650 6 1168 3769 103 0 0 chr4 76472445 76472960 -79157160 - L1_Mm LINE L1 -10 5873 5359 6 1168 2810 208 31 92 chr4 76472973 76473878 -79156242 + RMER17D LTR ERVK 26 875 -14 6 1168 2532 135 51 0 chr4 76473903 76474332 -79155788 - L1_Mm LINE L1 -520 5363 4913 6 1168 5042 52 27 2 chr4 76474332 76474972 -79155148 + L1_Mus1 LINE L1 5912 6567 0 6 1168 3428 62 26 0 chr4 76474998 76475466 -79154654 - L1_Mur1 LINE L1 -1225 4661 4182 6 1168 3435 110 45 29 chr4 76475463 76475577 -79154543 + Lx3_Mus LINE L1 5325 5438 -448 6 1168 1694 21 0 0 chr4 76475577 76475769 -79154351 - B2_Mm1a SINE B2 -1 192 1 6 1168 8374 114 60 15 chr4 76475769 76477252 -79152868 + Lx3_Mus LINE L1 5439 7001 -8 6 1168 245 48 24 0 chr4 76477728 76477816 -79152304 + L1Md_T LINE L1 6540 6582 0 6 1168 4806 94 10 1 chr4 76479121 76479803 -79150317 - L1_Mus3 LINE L1 -6 6632 5945 6 1168 563 109 2 0 chr4 76479813 76479953 -79150167 - L1_Mus3 LINE L1 -12 6642 6541 6 1168 347 90 51 0 chr4 76479990 76480068 -79150052 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 1168 11291 65 0 4 chr4 76480068 76482220 -79147900 - L1Md_F2 LINE L1 -11 6571 4427 6 1168 340 330 10 0 chr4 76482239 76482339 -79147781 - ORR1E LTR MaLR -258 101 1 6 1168 283 337 12 0 chr4 76482400 76482483 -79147637 + MLT1A1 LTR MaLR 44 127 -281 6 1168 203 236 0 35 chr4 76483261 76483318 -79146802 + A-rich Low_complexity Low_complexity 2 56 0 6 1168 884 210 74 22 chr4 76485036 76485265 -79144855 - Lx7 LINE L1 -17 7679 7439 6 1168 24 77 0 0 chr4 76485676 76485728 -79144392 + AT_rich Low_complexity Low_complexity 1 52 0 6 1168 1142 304 72 17 chr4 76485785 76486187 -79143933 + MTE-int LTR MaLR 74 497 -1083 7 1168 324 289 78 55 chr4 76486188 76486316 -79143804 + MTEb LTR MaLR 246 376 -3 7 1168 396 0 0 0 chr4 76486536 76486580 -79143540 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 7 1168 437 324 113 35 chr4 76486934 76487190 -79142930 - MLT1C LTR MaLR 0 467 192 7 1168 198 91 0 0 chr4 76487618 76487651 -79142469 + (TATAA)n Simple_repeat Simple_repeat 1 33 0 7 1168 804 346 67 17 chr4 76488594 76489120 -79141000 - Lx8 LINE L1 -245 7228 6677 7 1168 246 128 0 0 chr4 76490138 76490177 -79139943 + (TCCCC)n Simple_repeat Simple_repeat 2 40 0 7 1168 573 76 0 0 chr4 76491391 76491470 -79138650 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1168 236 330 11 0 chr4 76491479 76491567 -79138553 + (CA)n Simple_repeat Simple_repeat 1 89 0 7 1168 743 281 97 0 chr4 76492279 76492475 -79137645 + B4 SINE B4 2 211 -81 7 1168 324 83 0 0 chr4 76492475 76492523 -79137597 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1168 743 281 97 0 chr4 76492523 76492564 -79137556 + B4 SINE B4 212 261 -31 7 1168 22 0 0 0 chr4 76493959 76493981 -79136139 + AT_rich Low_complexity Low_complexity 1 22 0 7 1168 257 313 24 0 chr4 76494386 76494469 -79135651 - BC1_Mm scRNA scRNA -53 99 15 7 1168 627 14 0 0 chr4 76495393 76495465 -79134655 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1168 191 36 36 0 chr4 76495465 76495492 -79134628 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1168 432 221 155 16 chr4 76495566 76495695 -79134425 + B1_Mur1 SINE Alu 3 149 0 7 1168 309 312 102 47 chr4 76495894 76496194 -79133926 + ORR1E LTR MaLR 41 370 0 7 1168 317 256 26 0 chr4 76496601 76496679 -79133441 - PB1D10 SINE Alu -17 100 21 7 1168 512 331 83 3 chr4 76496729 76497029 -79133091 - MER33 DNA MER1_type 0 324 1 7 1168 1045 148 16 21 chr4 76497337 76497523 -79132597 - B2_Mm2 SINE B2 -6 189 5 7 1168 222 175 31 31 chr4 76498648 76498713 -79131407 + T-rich Low_complexity Low_complexity 6 70 0 7 1168 1590 124 162 13 chr4 76498892 76499195 -79130925 - Lx3A LINE L1 -23 6958 6611 7 1168 207 0 0 0 chr4 76500223 76500246 -79129874 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1168 2857 152 8 0 chr4 76500248 76500723 -79129397 + Lx3B LINE L1 6492 6970 -3 2 1168 997 68 0 0 chr4 76500896 76501029 -79129091 - B1_Mm SINE Alu -9 138 6 3 1168 253 369 0 37 chr4 76501205 76501312 -79128808 + MER119 DNA MER1_type 131 233 -350 4 1168 453 346 78 21 chr4 76501420 76501459 -79128661 + ID SINE ID 1 52 -172 5 1168 189 0 0 0 chr4 76501459 76501480 -79128640 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 6 1168 453 346 78 21 chr4 76501480 76501632 -79128488 + ID_B1 SINE B4 53 203 -21 5 1168 276 255 62 31 chr4 76501626 76501723 -79128397 - RSINE1 SINE B4 -43 122 23 7 1168 186 365 0 0 chr4 76503545 76503608 -79126512 + L2a LINE L2 3050 3112 -314 8 1168 231 36 0 0 chr4 76503714 76503742 -79126378 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 9 1168 21 36 0 0 chr4 76504038 76504066 -79126054 + AT_rich Low_complexity Low_complexity 1 28 0 1 1168 246 290 19 39 chr4 76504226 76504330 -79125790 + L1M4 LINE L1 3462 3563 -2583 1 1168 285 258 81 20 chr4 76504642 76504741 -79125379 + ID_B1 SINE B4 72 176 -48 1 1168 427 211 45 55 chr4 76504657 76504767 -79125353 + PB1D10 SINE Alu 9 117 0 1 1168 216 0 0 0 chr4 76505586 76505610 -79124510 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1168 1388 126 0 17 chr4 76505610 76505845 -79124275 - Lx LINE L1 -17 6637 6407 1 1168 709 72 108 0 chr4 76505846 76505957 -79124163 + Lx LINE L1 6275 6397 -257 1 1168 340 333 70 19 chr4 76505957 76506113 -79124007 - B4A SINE B4 -124 168 5 1 1168 180 0 0 0 chr4 76506217 76506237 -79123883 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1168 212 218 36 0 chr4 76506311 76506366 -79123754 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 1168 540 0 0 0 chr4 76506672 76506732 -79123388 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1168 231 206 7 115 chr4 76506739 76506887 -79123233 + Lx9 LINE L1 6096 6227 -1417 2 1168 1259 222 44 14 chr4 76506905 76507212 -79122908 - RMER19A LTR ERVK -356 381 4 2 1168 468 48 0 0 chr4 76507251 76507314 -79122806 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1168 554 51 13 0 chr4 76507314 76507392 -79122728 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2 1168 2272 266 46 29 chr4 76507409 76508098 -79122022 + Lx9 LINE L1 6252 6952 -692 2 1168 270 176 0 0 chr4 76508103 76508154 -79121966 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1168 1895 280 90 18 chr4 76508281 76509235 -79120885 + L1MC1 LINE L1 4287 5309 -837 2 1168 6075 53 1 0 chr4 76509238 76509988 -79120132 + L1Md_F2 LINE L1 5819 6569 -13 2 1168 725 310 125 28 chr4 76510047 76510750 -79119370 + L1MC1 LINE L1 5424 6194 -139 2 1168 1285 96 0 10 chr4 76512817 76513017 -79117103 + L1Md_F2 LINE L1 6373 6570 -12 2 1168 239 246 177 50 chr4 76513149 76513290 -79116830 + MIRb SINE MIR 4 162 -106 2 1168 218 293 70 39 chr4 76513927 76514083 -79116037 + L2 LINE L2 1934 2094 -1325 2 1168 432 0 0 0 chr4 76514964 76515012 -79115108 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1168 397 331 39 39 chr4 76515253 76515407 -79114713 - RSINE1 SINE B4 0 165 12 3 1168 737 371 23 19 chr4 76516144 76516405 -79113715 + B4A SINE B4 11 272 -20 3 1168 248 175 0 16 chr4 76516441 76516505 -79113615 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1168 312 299 15 56 chr4 76516616 76516882 -79113238 + L1M2 LINE L1 3028 3282 -2861 3 1168 1093 300 134 8 chr4 76517138 76517757 -79112363 + L1_Mur3 LINE L1 3291 3987 -1893 3 1168 9449 181 36 45 chr4 76518136 76520579 -79109541 + L1_Mur3 LINE L1 888 3375 -2502 3 1168 206 184 20 20 chr4 76520680 76520730 -79109390 + (TATG)n Simple_repeat Simple_repeat 3 52 0 3 1168 409 312 53 86 chr4 76520982 76521413 -79108707 - L1MA7 LINE L1 -398 5893 5477 3 1168 3017 123 19 15 chr4 76521457 76521935 -79108185 - Lx3_Mus LINE L1 0 7009 6530 3 1168 738 82 0 0 chr4 76521935 76522033 -79108087 + L1_Mur1 LINE L1 5061 5158 -728 4 1168 245 265 15 0 chr4 76522033 76522101 -79108019 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 4 1168 596 160 11 0 chr4 76522101 76522276 -79107844 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 4 1168 977 90 118 53 chr4 76522292 76522354 -79107766 + L1_Mur1 LINE L1 5153 5212 -674 4 1168 2970 73 19 7 chr4 76522354 76522770 -79107350 + BGLII LTR ERVK 1 421 0 4 1168 977 90 118 53 chr4 76522770 76522894 -79107226 + L1_Mur1 LINE L1 5213 5351 -535 4 1168 355 317 114 50 chr4 76523185 76523447 -79106673 - L1MA7 LINE L1 -763 5380 5102 3 1168 232 119 0 0 chr4 76524802 76524844 -79105276 + Lx2A LINE L1 6961 7002 -6 4 1168 439 72 75 40 chr4 76524862 76525036 -79105084 + GA-rich Low_complexity Low_complexity 1 180 0 4 1168 801 267 192 14 chr4 76525147 76525439 -79104681 + MTE2b LTR MaLR 15 358 -21 4 1168 1756 300 110 38 chr4 76525664 76526691 -79103429 - L1MC3 LINE L1 -18 7767 6654 4 1168 324 0 0 0 chr4 76526691 76526727 -79103393 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1168 1756 300 110 38 chr4 76526727 76526836 -79103284 - L1MC3 LINE L1 -1132 6653 6549 4 1168 642 350 76 44 chr4 76526844 76527250 -79102870 - MTD LTR MaLR 0 419 1 4 1168 363 317 97 11 chr4 76527549 76527857 -79102263 - MTE2a LTR MaLR -5 374 1 5 1168 398 270 39 8 chr4 76527857 76527978 -79102142 + MLT1A LTR MaLR 250 374 0 5 1168 2715 133 9 24 chr4 76528551 76529005 -79101115 + Lx LINE L1 6207 6653 -1 5 1168 228 105 0 0 chr4 76529122 76529144 -79100976 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1168 459 0 0 0 chr4 76529144 76529195 -79100925 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1168 228 105 0 0 chr4 76529195 76529210 -79100910 + (TA)n Simple_repeat Simple_repeat 1 15 0 5 1168 22 0 0 0 chr4 76529607 76529629 -79100491 + AT_rich Low_complexity Low_complexity 1 22 0 5 1168 185 338 0 48 chr4 76529981 76530065 -79100055 - L3 LINE CR1 -2235 2254 2175 5 1168 505 313 126 65 chr4 76531272 76531512 -79098608 - Lx8 LINE L1 -2 7471 7214 5 1168 3081 39 28 0 chr4 76531512 76531899 -79098221 - L1Md_F3 LINE L1 -15 6569 6172 5 1168 505 313 126 65 chr4 76531899 76531935 -79098185 - Lx8 LINE L1 -260 7213 7178 5 1168 21 0 0 0 chr4 76531936 76531957 -79098163 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 248 0 0 30 chr4 76531996 76532029 -79098091 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 6 1168 1059 90 7 0 chr4 76532030 76532175 -79097945 - B1_Mus2 SINE Alu 0 147 2 6 1168 2873 51 0 6 chr4 76532268 76532289 -79097831 - L1Md_F2 LINE L1 -280 6302 6284 6 1168 870 17 8 8 chr4 76532289 76532409 -79097711 - L1Md_F3 LINE L1 -17 6567 6448 6 1168 2873 51 0 6 chr4 76532409 76532745 -79097375 - L1Md_F2 LINE L1 -299 6283 5948 6 1168 29 28 0 0 chr4 76533540 76533576 -79096544 + AT_rich Low_complexity Low_complexity 1 36 0 6 1168 386 231 16 49 chr4 76533703 76533826 -79096294 - L1M3 LINE L1 -672 5628 5510 6 1168 614 107 16 0 chr4 76533836 76533958 -79096162 + (TCTG)n Simple_repeat Simple_repeat 1 124 0 6 1168 180 77 0 0 chr4 76533960 76533986 -79096134 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1168 999 126 0 0 chr4 76534039 76534198 -79095922 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 6 1168 883 96 33 27 chr4 76534256 76534389 -79095731 + B2_Mm2 SINE B2 44 180 -15 7 1168 351 0 0 0 chr4 76534389 76534428 -79095692 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1168 848 63 175 0 chr4 76534431 76534557 -79095563 + B1_Mus1 SINE Alu 1 148 0 7 1168 883 96 33 27 chr4 76534557 76534569 -79095551 + B2_Mm2 SINE B2 181 192 -3 7 1168 480 276 169 12 chr4 76534583 76534909 -79095211 - L1M3 LINE L1 -1537 4603 4227 6 1168 1487 245 92 28 chr4 76534949 76535382 -79094738 + MT2A LTR ERVL 66 526 -7 7 1168 22 56 0 0 chr4 76536633 76536669 -79093451 + AT_rich Low_complexity Low_complexity 1 36 0 7 1168 408 281 11 136 chr4 76537042 76537219 -79092901 - MTEa LTR MaLR -11 368 214 7 1168 247 308 0 0 chr4 76537211 76537276 -79092844 - MTEa LTR MaLR -305 65 1 7 1168 847 258 77 27 chr4 76537277 76537794 -79092326 - L1M2 LINE L1 -698 5593 5050 7 1168 2598 40 12 15 chr4 76537808 76538141 -79091979 + IAPEY_LTR LTR ERVK 54 385 0 7 1168 273 326 47 47 chr4 76538151 76538383 -79091737 - L1M2 LINE L1 -1134 5009 4775 7 1168 558 361 63 38 chr4 76538418 76538657 -79091463 - B4A SINE B4 0 292 48 7 1168 346 276 87 33 chr4 76538705 76538855 -79091265 - L1M2 LINE L1 -1360 4783 4626 7 1168 830 185 75 0 chr4 76539717 76539890 -79090230 + Lx2 LINE L1 6811 6996 -1 7 1168 824 112 8 0 chr4 76541239 76541364 -79088756 - B1_Mus1 SINE Alu -21 127 2 8 1168 346 252 0 119 chr4 76541252 76541378 -79088742 - MT2B LTR ERVL -337 264 154 8 1168 7690 42 3 3 chr4 76541660 76542602 -79087518 + L1Md_F2 LINE L1 5625 6566 -16 8 1168 1534 197 17 17 chr4 76542614 76542970 -79087150 + RLTR15 LTR ERVK 4 359 0 8 1168 1292 128 41 60 chr4 76543028 76543175 -79086945 + L1_Mur1 LINE L1 2885 3019 -2867 8 1168 4435 37 17 0 chr4 76543175 76543712 -79086408 - L1Md_F3 LINE L1 0 6584 6039 8 1168 1292 128 41 60 chr4 76543712 76543830 -79086290 + L1_Mur1 LINE L1 3020 3145 -2741 8 1168 255 125 0 0 chr4 76543870 76543910 -79086210 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1168 1855 255 34 27 chr4 76543912 76544245 -79085875 + MYSERV-int LTR ERVK 5989 6314 -236 8 1168 3105 68 8 0 chr4 76544245 76544642 -79085478 + L1_Mus1 LINE L1 6162 6561 -6 8 1168 1855 255 34 27 chr4 76544642 76544864 -79085256 + MYSERV-int LTR ERVK 6315 6548 -2 8 1168 318 337 78 105 chr4 76544888 76545385 -79084735 + RLTR12B LTR ERVK 42 525 -3 8 1168 264 333 78 82 chr4 76545385 76545637 -79084483 + MLT1C LTR MaLR 217 467 0 9 18 3034 63 2 8 chr4 76545873 76546271 -79083849 + MTA_Mm LTR MaLR 1 396 0 9 1169 1069 242 134 158 chr4 76546378 76546953 -79083167 + RLTR31A_Mm LTR ERVK 1 561 0 9 1169 222 118 0 0 chr4 76547601 76547635 -79082485 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1169 185 367 71 10 chr4 76548751 76548850 -79081270 + MIR SINE MIR 18 122 -140 9 1169 585 0 0 0 chr4 76549045 76549110 -79081010 + (TA)n Simple_repeat Simple_repeat 1 65 0 9 1169 26 64 0 0 chr4 76549357 76549404 -79080716 + AT_rich Low_complexity Low_complexity 1 47 0 9 1169 22 0 0 0 chr4 76549560 76549582 -79080538 + AT_rich Low_complexity Low_complexity 1 22 0 9 1169 2753 139 27 2 chr4 76549683 76550131 -79079989 - Lx LINE L1 -3 6651 6193 9 1169 207 186 0 0 chr4 76550195 76550238 -79079882 + CT-rich Low_complexity Low_complexity 2 44 0 9 1169 1396 299 59 14 chr4 76550238 76550797 -79079323 - Lx7 LINE L1 -291 7405 6822 1 1169 26 30 0 0 chr4 76551824 76551857 -79078263 + AT_rich Low_complexity Low_complexity 1 33 0 1 1169 285 145 0 0 chr4 76553946 76554008 -79076112 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 1 1169 957 80 0 35 chr4 76554088 76554231 -79075889 + L1_Mus2 LINE L1 6429 6566 0 1 1169 245 270 79 0 chr4 76555290 76555353 -79074767 - ID4 SINE ID -14 69 2 1 1169 822 296 12 44 chr4 76557769 76558020 -79072100 + Lx7 LINE L1 7000 7242 -454 1 1169 217 48 23 45 chr4 76558024 76558068 -79072052 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 1 1169 748 83 9 0 chr4 76558070 76558178 -79071942 - B1_Mm SINE Alu -3 144 36 1 1169 361 252 62 76 chr4 76558178 76558577 -79071543 + Lx7 LINE L1 7237 7692 -4 1 1169 21 0 0 0 chr4 76559274 76559295 -79070825 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 4206 50 0 8 chr4 76560018 76560544 -79069576 + L1Md_T LINE L1 6059 6580 -2 1 1169 32 0 0 0 chr4 76560547 76560579 -79069541 + AT_rich Low_complexity Low_complexity 1 32 0 1 1169 185 365 0 0 chr4 76562054 76562139 -79067981 + MIR SINE MIR 113 197 -65 1 1169 31 26 0 0 chr4 76562241 76562279 -79067841 + AT_rich Low_complexity Low_complexity 1 38 0 1 1169 23 0 0 0 chr4 76563128 76563151 -79066969 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 1698 301 78 39 chr4 76563651 76563922 -79066198 + Lx9 LINE L1 6771 7051 -593 1 1169 185 0 40 0 chr4 76563922 76563947 -79066173 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1169 1698 301 78 39 chr4 76563947 76564516 -79065604 + Lx9 LINE L1 7052 7644 0 1 1169 2460 119 34 8 chr4 76565495 76565988 -79064132 + Lx2 LINE L1 5469 5967 -1030 1 1169 441 36 0 0 chr4 76566570 76566625 -79063495 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1169 684 345 23 39 chr4 76566639 76566895 -79063225 - B4A SINE B4 -25 267 16 1 1169 27 0 0 0 chr4 76567354 76567381 -79062739 + AT_rich Low_complexity Low_complexity 1 27 0 1 1169 750 309 11 11 chr4 76567432 76567601 -79062519 + B3A SINE B2 9 179 -19 1 1169 207 69 0 0 chr4 76567601 76567630 -79062490 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 1169 750 309 11 11 chr4 76567630 76567650 -79062470 + B3A SINE B2 180 198 0 1 1169 1835 187 94 2 chr4 76568164 76568597 -79061523 + Lx2B LINE L1 833 1297 -5687 1 1169 7327 240 95 90 chr4 76568599 76570196 -79059924 + Lx2B LINE L1 1414 3084 -3916 1 1169 669 118 82 0 chr4 76570196 76570306 -79059814 + B2_Mm2 SINE B2 2 120 -75 1 1169 7327 240 95 90 chr4 76570306 76570447 -79059673 + Lx2B LINE L1 3085 3231 -3769 1 1169 220 351 26 13 chr4 76570447 76570525 -79059595 + B1F SINE Alu 15 93 -56 1 1169 7327 240 95 90 chr4 76570525 76573169 -79056951 + Lx2B LINE L1 3232 6002 -998 1 1169 225 36 0 0 chr4 76573169 76573197 -79056923 + U6 snRNA snRNA 80 107 0 1 1169 219 103 0 0 chr4 76573656 76573695 -79056425 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1169 323 23 0 22 chr4 76573773 76573818 -79056302 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1169 5655 176 4 1 chr4 76573946 76574942 -79055178 + Lx2B LINE L1 6000 6998 -2 1 1169 21 0 0 0 chr4 76575750 76575771 -79054349 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 5147 73 74 1 chr4 76576745 76577459 -79052661 - L1_Mus1 LINE L1 0 6567 5802 1 1169 222 37 0 0 chr4 76580235 76580262 -79049858 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1 1169 928 158 55 0 chr4 76580871 76581017 -79049103 + B2_Mm2 SINE B2 1 154 -41 1 1169 681 13 0 0 chr4 76581394 76581472 -79048648 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1169 297 275 50 0 chr4 76581542 76581622 -79048498 - B4 SINE B4 -203 89 6 1 1169 441 316 20 42 chr4 76581670 76581934 -79048186 - B4A SINE B4 -2 290 1 1 1169 211 372 51 0 chr4 76581944 76582022 -79048098 + RSINE1 SINE B4 74 155 -10 1 1169 25 51 0 0 chr4 76582090 76582129 -79047991 + AT_rich Low_complexity Low_complexity 1 39 0 1 1169 33 43 0 0 chr4 76583047 76583094 -79047026 + AT_rich Low_complexity Low_complexity 1 47 0 1 1169 339 225 25 12 chr4 76583621 76583702 -79046418 + MTE2a LTR MaLR 1 82 -297 1 1169 941 249 112 17 chr4 76583737 76584031 -79046089 + MTE2a LTR MaLR 58 379 0 1 1169 189 107 0 0 chr4 76584517 76584545 -79045575 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 1 1169 1980 188 73 0 chr4 76584618 76584975 -79045145 + ORR1B1 LTR MaLR 1 383 -11 1 1169 1356 246 40 67 chr4 76586204 76586609 -79043511 - MTD LTR MaLR -1 418 25 1 1169 258 136 0 0 chr4 76586613 76586657 -79043463 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1169 201 74 0 0 chr4 76587542 76587569 -79042551 + (CTG)n Simple_repeat Simple_repeat 3 29 0 1 1169 459 0 0 0 chr4 76589631 76589682 -79040438 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1169 783 126 0 0 chr4 76591399 76591526 -79038594 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1 1169 369 333 29 0 chr4 76591823 76591925 -79038195 + B1F SINE Alu 1 105 -44 1 1169 262 400 16 0 chr4 76591925 76591943 -79038177 + ID_B1 SINE B4 82 203 -21 1 1169 201 121 0 0 chr4 76592067 76592100 -79038020 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1169 213 374 72 0 chr4 76593029 76593112 -79037008 - PB1D10 SINE Alu -27 90 2 1 1169 368 244 15 0 chr4 76593385 76593516 -79036604 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 1 1169 220 376 32 11 chr4 76594604 76594698 -79035422 + PB1D10 SINE Alu 2 97 -20 1 1169 421 338 69 0 chr4 76595140 76595285 -79034835 + RSINE1 SINE B4 3 157 -8 1 1169 489 17 0 0 chr4 76595749 76595807 -79034313 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1169 929 354 122 20 chr4 76595821 76596636 -79033484 - L2 LINE L2 -797 2622 1725 1 1169 597 14 0 0 chr4 76597815 76597885 -79032235 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1 1169 555 16 0 0 chr4 76598092 76598156 -79031964 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1169 387 0 0 0 chr4 76598156 76598198 -79031922 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1169 4759 108 49 0 chr4 76598608 76599322 -79030798 + Lx2 LINE L1 6249 6997 0 1 1169 890 276 0 0 chr4 76599662 76599872 -79030248 - B3 SINE B2 -6 210 1 1 1169 556 333 70 18 chr4 76602701 76602973 -79027147 + B4A SINE B4 1 286 -6 1 1169 309 274 7 133 chr4 76604278 76604413 -79025707 + MT2B LTR ERVL 152 269 -332 1 1169 774 210 0 27 chr4 76604303 76604450 -79025670 + B1_Mur4 SINE Alu 7 149 -1 1 1169 330 324 62 105 chr4 76604306 76604468 -79025652 + B4 SINE B4 94 248 -44 1 1169 553 288 14 0 chr4 76604493 76604632 -79025488 + RSINE1 SINE B4 3 143 -22 1 1169 630 89 0 0 chr4 76604855 76604945 -79025175 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1169 204 189 0 0 chr4 76607229 76607303 -79022817 + T-rich Low_complexity Low_complexity 1 74 0 1 1169 724 251 41 35 chr4 76607404 76607871 -79022249 + RMER17C LTR ERVK 1 385 -25 1 1169 420 289 9 28 chr4 76607947 76608054 -79022066 + B1F2 SINE Alu 27 131 -18 1 1169 487 258 39 0 chr4 76609340 76609468 -79020652 - ID_B1 SINE B4 -89 135 3 1 1169 433 330 9 0 chr4 76611374 76611483 -79018637 - B4 SINE B4 -96 196 87 1 1169 385 282 15 22 chr4 76611564 76611698 -79018422 - MLT1D LTR MaLR -7 498 366 1 1169 360 338 88 75 chr4 76611716 76611956 -79018164 - MLT1D LTR MaLR -257 248 6 1 1169 880 118 44 0 chr4 76612859 76612994 -79017126 + B1_Mus1 SINE Alu 2 142 -6 1 1169 441 0 0 0 chr4 76613176 76613225 -79016895 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1169 417 39 0 0 chr4 76613225 76613275 -79016845 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1169 2455 88 12 0 chr4 76613333 76613674 -79016446 - L1_Mus1 LINE L1 -366 6201 5857 1 1169 2620 65 27 0 chr4 76613674 76614011 -79016109 + L1_Mus1 LINE L1 6216 6561 -6 1 1169 530 300 83 11 chr4 76614031 76614297 -79015823 + L1MB3 LINE L1 5895 6179 -4 1 1169 693 34 0 0 chr4 76615853 76615941 -79014179 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1169 328 325 64 36 chr4 76616002 76616222 -79013898 - L1MCa LINE L1 -4591 1917 1692 1 1169 2955 137 2 2 chr4 76617764 76618232 -79011888 + L1_Mus4 LINE L1 6166 6633 -3 1 1169 26 64 0 0 chr4 76618234 76618281 -79011839 + AT_rich Low_complexity Low_complexity 1 47 0 1 1169 237 180 0 0 chr4 76620119 76620169 -79009951 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1169 1654 172 19 25 chr4 76620289 76620610 -79009510 + ORR1B2 LTR MaLR 1 319 -48 1 1169 545 143 224 0 chr4 76620638 76620736 -79009384 - Lx6 LINE L1 -524 6936 6817 1 1169 317 220 0 157 chr4 76620736 76620806 -79009314 + ORR1B2 LTR MaLR 250 304 -63 1 1169 1384 141 61 29 chr4 76620806 76621084 -79009036 + Lx2A1 LINE L1 6719 7005 -3 1 1169 317 220 0 157 chr4 76621084 76621153 -79008967 + ORR1B2 LTR MaLR 305 367 0 1 1169 459 0 0 0 chr4 76621468 76621519 -79008601 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1169 215 333 156 0 chr4 76622279 76622369 -79007751 + MIRb SINE MIR 82 185 -83 1 1169 492 221 0 40 chr4 76624203 76624339 -79005781 - B1_Mur4 SINE Alu -1 149 28 1 1169 371 314 19 5 chr4 76624432 76624632 -79005488 - MER2 DNA MER2_type -3 342 86 1 1169 383 364 132 53 chr4 76624722 76624923 -79005197 + MLT1H2 LTR MaLR 30 262 -227 1 1169 753 145 0 0 chr4 76624923 76625061 -79005059 + Lx2 LINE L1 6859 6996 -1 1 1169 383 364 132 53 chr4 76625061 76625216 -79004904 + MLT1H2 LTR MaLR 263 414 -75 1 1169 519 65 312 0 chr4 76625915 76626008 -79004112 + B1_Mus1 SINE Alu 26 147 -1 1 1169 453 36 0 0 chr4 76626056 76626111 -79004009 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 1 1169 210 363 33 11 chr4 76626326 76626418 -79003702 + MER5A DNA MER1_type 3 96 -93 1 1169 962 189 124 4 chr4 76627919 76628153 -79001967 - L1_Mus4 LINE L1 -5 6631 6370 1 1169 806 116 8 0 chr4 76628226 76628355 -79001765 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 1 1169 29 60 0 0 chr4 76628826 76628876 -79001244 + AT_rich Low_complexity Low_complexity 1 50 0 1 1169 2777 57 0 0 chr4 76628876 76629226 -79000894 - L1Md_F2 LINE L1 -15 6567 6218 1 1169 183 42 0 0 chr4 76629240 76629264 -79000856 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1169 228 247 200 0 chr4 76629265 76629350 -79000770 - B3 SINE B2 -50 166 65 2 1169 357 24 0 0 chr4 76630381 76630423 -78999697 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1169 2060 284 81 38 chr4 76630516 76631257 -78998863 + Lx8 LINE L1 2500 3262 -2618 2 1169 2120 109 64 17 chr4 76631257 76631601 -78998519 + Lx3_Mus LINE L1 6650 7009 0 2 1169 2060 284 81 38 chr4 76631601 76631855 -78998265 + Lx8 LINE L1 3263 3538 -2342 2 1169 486 320 7 8 chr4 76631907 76632101 -78998019 + Lx6 LINE L1 7222 7363 -97 2 1169 1281 297 58 26 chr4 76632217 76632895 -78997225 + Lx8 LINE L1 3579 4277 -1603 2 1169 1374 271 59 87 chr4 76632906 76633700 -78996420 + RMER12 LTR ERVK 1 936 -468 2 1169 6711 106 60 2 chr4 76633742 76635071 -78995049 + L1_Mus3 LINE L1 5232 6637 -1 2 1169 776 80 0 9 chr4 76635154 76635268 -78994852 + (TTCTC)n Simple_repeat Simple_repeat 4 116 0 2 1169 699 174 45 39 chr4 76635304 76635483 -78994637 + RMER12 LTR ERVK 1101 1280 -42 2 1169 730 257 38 73 chr4 76635527 76635677 -78994443 + Lx8 LINE L1 4285 4438 -1442 2 1169 697 82 82 0 chr4 76635677 76635799 -78994321 + L1_Mus1 LINE L1 6436 6567 0 2 1169 730 257 38 73 chr4 76635799 76635963 -78994157 + Lx8 LINE L1 4439 4588 -1292 2 1169 2784 319 96 43 chr4 76635962 76637749 -78992371 + Lx8 LINE L1 5439 7350 -123 2 1169 1082 212 14 5 chr4 76639110 76639328 -78990792 + URR1B DNA MER1_type 6 225 0 2 1169 26 0 0 0 chr4 76639969 76639995 -78990125 + AT_rich Low_complexity Low_complexity 1 26 0 2 1169 230 241 22 44 chr4 76640077 76640168 -78989952 + T-rich Low_complexity Low_complexity 2 90 0 2 1169 906 124 0 0 chr4 76640317 76640454 -78989666 - L1_Mm LINE L1 -1891 3992 3856 2 1169 1547 109 4 30 chr4 76640461 76640725 -78989395 + Lx LINE L1 6393 6649 -5 2 1169 980 28 49 38 chr4 76640890 76641361 -78988759 + (GGAAA)n Simple_repeat Simple_repeat 1 475 0 2 1169 243 0 0 0 chr4 76641768 76641795 -78988325 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1169 22 56 0 0 chr4 76642781 76642817 -78987303 + AT_rich Low_complexity Low_complexity 1 36 0 2 1169 279 220 0 0 chr4 76642992 76643083 -78987037 + GA-rich Low_complexity Low_complexity 1 91 0 2 1169 298 371 63 102 chr4 76643095 76643398 -78986722 - B4 SINE B4 0 292 2 2 1169 225 132 0 0 chr4 76643794 76643832 -78986288 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1169 288 0 0 0 chr4 76645304 76645336 -78984784 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1169 2164 218 31 87 chr4 76646221 76646763 -78983357 - RLTR18B LTR ERVK 0 512 1 2 1169 261 321 43 35 chr4 76646880 76646996 -78983124 + B1F SINE Alu 3 119 -1 2 1169 2207 139 81 15 chr4 76649368 76649762 -78980358 + RLTR9B2 LTR ERVK 1 420 0 2 1169 180 206 79 0 chr4 76652037 76652163 -78977957 + CT-rich Low_complexity Low_complexity 5 140 0 2 1169 5482 52 31 3 chr4 76652499 76653208 -78976912 + L1Md_F2 LINE L1 5854 6582 0 2 1169 225 281 198 0 chr4 76653498 76653594 -78976526 + MIRb SINE MIR 123 237 -31 2 1169 1076 76 14 0 chr4 76654934 76655079 -78975041 + B1_Mm SINE Alu 1 147 0 2 1169 255 83 50 0 chr4 76655083 76655143 -78974977 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 2 1169 2997 75 5 12 chr4 76655556 76655959 -78974161 + MTB LTR MaLR 1 400 0 2 1169 253 269 8 25 chr4 76656561 76656683 -78973437 - Lx9 LINE L1 -8 7636 7517 2 1169 441 0 0 0 chr4 76656683 76656732 -78973388 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1169 1363 239 6 25 chr4 76656747 76657104 -78973016 - Lx9 LINE L1 -181 7463 7114 2 1169 2801 179 138 173 chr4 76657209 76657745 -78972375 + RLTR25A LTR ERVK 50 682 -421 2 1169 213 39 0 0 chr4 76657745 76657771 -78972349 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1169 2801 179 138 173 chr4 76657771 76658158 -78971962 + RLTR25A LTR ERVK 683 962 -141 2 1169 387 0 0 0 chr4 76658158 76658201 -78971919 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1169 564 42 0 0 chr4 76658201 76658271 -78971849 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1169 2801 179 138 173 chr4 76658271 76658362 -78971758 + RLTR25A LTR ERVK 963 1043 -60 2 1169 730 88 0 8 chr4 76658362 76658488 -78971632 - L1Md_F2 LINE L1 0 6582 6458 2 1169 2801 179 138 173 chr4 76658488 76658562 -78971558 + RLTR25A LTR ERVK 1044 1102 -1 2 1169 370 216 29 93 chr4 76658562 76658654 -78971466 + B1F2 SINE Alu 66 142 -5 2 1169 274 232 26 26 chr4 76658656 76658771 -78971349 + A-rich Low_complexity Low_complexity 6 120 0 2 1169 1189 55 6 12 chr4 76659192 76659358 -78970762 - L1Md_F2 LINE L1 -12 6570 6406 2 1169 234 272 82 98 chr4 76659685 76659872 -78970248 - MIR SINE MIR -14 254 61 2 1169 32 26 0 0 chr4 76661091 76661130 -78968990 + AT_rich Low_complexity Low_complexity 1 39 0 2 1169 586 15 0 14 chr4 76661212 76661281 -78968839 + L1Md_T LINE L1 5519 5586 -297 2 1169 8389 35 0 0 chr4 76661281 76662277 -78967843 + L1Md_T LINE L1 5587 6582 0 2 1169 279 0 0 0 chr4 76662391 76662422 -78967698 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1169 189 0 0 0 chr4 76663344 76663365 -78966755 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1169 288 0 0 0 chr4 76663365 76663396 -78966724 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1169 234 0 0 0 chr4 76663401 76663427 -78966693 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1169 1031 280 91 15 chr4 76663571 76663901 -78966219 - MTE2a LTR MaLR -5 374 20 2 1169 250 320 26 26 chr4 76664053 76664130 -78965990 + MER2B DNA MER2_type 234 310 -26 2 1169 973 229 9 5 chr4 76666429 76666653 -78963467 - URR1B DNA MER1_type 0 225 1 2 1169 23 54 0 0 chr4 76666791 76666828 -78963292 + AT_rich Low_complexity Low_complexity 1 37 0 2 1169 21 36 0 0 chr4 76666919 76666947 -78963173 + AT_rich Low_complexity Low_complexity 1 28 0 2 1169 847 313 100 46 chr4 76667007 76667358 -78962762 + MTE2b LTR MaLR 3 372 -7 2 1169 1230 309 117 4 chr4 76667365 76667895 -78962225 + MTE2b-int LTR MaLR 1 590 -990 2 1169 1123 247 42 55 chr4 76667898 76668283 -78961837 + ORR1C2 LTR MaLR 1 380 -4 2 1169 396 303 72 9 chr4 76668475 76668795 -78961325 + MTE2b-int LTR MaLR 1209 1577 -3 2 1169 1031 303 50 28 chr4 76668790 76669150 -78960970 + MTE2b LTR MaLR 1 368 -11 2 1169 677 250 5 53 chr4 76669452 76669642 -78960478 + ORR1C2 LTR MaLR 1 181 -193 2 1169 795 156 0 0 chr4 76669644 76669804 -78960316 + CT-rich Low_complexity Low_complexity 1 160 0 2 1169 853 221 27 68 chr4 76669816 76669853 -78960267 + ORR1C2 LTR MaLR 175 208 -176 2 1169 2461 89 11 3 chr4 76669853 76670201 -78959919 + L1Md_F2 LINE L1 6220 6570 -12 2 1169 853 221 27 68 chr4 76670201 76670382 -78959738 + ORR1C2 LTR MaLR 209 384 0 2 1169 24 53 0 0 chr4 76670436 76670474 -78959646 + AT_rich Low_complexity Low_complexity 1 38 0 2 1169 21 82 0 0 chr4 76670536 76670585 -78959535 + AT_rich Low_complexity Low_complexity 1 49 0 2 1169 813 146 0 0 chr4 76671221 76671358 -78958762 + (TCCC)n Simple_repeat Simple_repeat 4 140 0 2 1169 1581 171 3 3 chr4 76672269 76672574 -78957546 + L1_Mur1 LINE L1 1442 1746 -4140 2 1169 315 0 0 0 chr4 76672616 76672651 -78957469 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1169 453 19 0 0 chr4 76672651 76672704 -78957416 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1169 1567 153 20 13 chr4 76672704 76673009 -78957111 + L1_Mur1 LINE L1 2152 2458 -3419 2 1169 3419 92 41 0 chr4 76673024 76673511 -78956609 + L1_Mus1 LINE L1 6061 6567 0 2 1169 3242 194 27 20 chr4 76673519 76674255 -78955865 + MusHAL1 LINE L1 1538 2278 -434 2 1169 500 151 35 0 chr4 76674254 76674340 -78955780 - L1_Mur2 LINE L1 -689 5188 5100 2 1169 7195 95 31 1 chr4 76674345 76675421 -78954699 - L1_Mus3 LINE L1 -1 6637 5530 2 1169 600 104 31 0 chr4 76675422 76675518 -78954602 - L1_Mur2 LINE L1 -1121 4756 4658 2 1169 1569 276 68 12 chr4 76675507 76676003 -78954117 + Lx2B LINE L1 6474 6997 -3 2 1169 1283 297 52 11 chr4 76676016 76676482 -78953638 + Lx7 LINE L1 6756 7240 -456 2 1169 440 123 96 0 chr4 76676477 76676550 -78953570 - Lx3_Mus LINE L1 -1115 5894 5815 2 146 418 341 75 113 chr4 76676806 76677405 -78952715 + RLTR18 LTR ERVK 33 608 -8 2 1170 257 326 42 42 chr4 76677708 76677804 -78952316 - RSINE1 SINE B4 -64 101 6 2 1170 275 282 23 12 chr4 76677812 76677898 -78952222 - MIRc SINE MIR -114 154 68 2 1170 182 160 20 0 chr4 76680008 76680058 -78950062 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1170 448 242 35 8 chr4 76680276 76680440 -78949680 + L1MA4 LINE L1 5694 5868 -435 2 1170 186 43 0 0 chr4 76680835 76680858 -78949262 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1170 3189 36 3 0 chr4 76681679 76682065 -78948055 - L1Md_A LINE L1 0 6582 6196 2 1170 29 47 0 0 chr4 76682474 76682517 -78947603 + AT_rich Low_complexity Low_complexity 1 43 0 2 1170 369 0 0 0 chr4 76682538 76682579 -78947541 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1170 281 215 139 9 chr4 76683050 76683158 -78946962 + Lx3C LINE L1 6829 6950 -26 2 1170 23 0 0 0 chr4 76683158 76683181 -78946939 + AT_rich Low_complexity Low_complexity 1 23 0 2 1170 24 32 0 0 chr4 76683398 76683429 -78946691 + AT_rich Low_complexity Low_complexity 1 31 0 2 1170 245 321 83 44 chr4 76683940 76684145 -78945975 - L2a LINE L2 -278 3148 2936 2 1170 252 86 0 0 chr4 76684959 76684994 -78945126 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1170 554 338 60 21 chr4 76685512 76685793 -78944327 + B4A SINE B4 1 292 0 2 1170 320 64 21 0 chr4 76685801 76685848 -78944272 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1170 441 0 0 0 chr4 76685848 76685896 -78944224 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1170 1007 90 0 0 chr4 76687925 76688059 -78942061 - B1_Mus1 SINE Alu -5 143 10 2 1170 383 384 8 8 chr4 76688258 76688392 -78941728 + RSINE1 SINE B4 3 136 -29 2 1170 396 0 0 0 chr4 76688412 76688456 -78941664 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1170 591 15 0 0 chr4 76688773 76688841 -78941279 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1170 698 215 0 0 chr4 76688849 76688970 -78941150 - B1_Mur2 SINE Alu -11 138 18 2 1170 464 290 14 28 chr4 76689303 76689445 -78940675 - B3 SINE B2 -76 140 1 2 1170 270 352 0 0 chr4 76689485 76689556 -78940564 + B4 SINE B4 3 73 -219 2 1170 486 98 0 0 chr4 76689585 76689667 -78940453 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1170 248 341 45 8 chr4 76689836 76689969 -78940151 - MER63A DNA AcHobo -66 144 7 2 1170 203 303 14 70 chr4 76690378 76690449 -78939671 - MIRm SINE MIR -18 258 192 2 1170 4708 55 3 2 chr4 76690462 76691050 -78939070 + L1Md_F2 LINE L1 5593 6181 -401 2 1170 1128 225 121 58 chr4 76691060 76691390 -78938730 + MTD LTR MaLR 55 405 -14 2 1170 1866 203 126 35 chr4 76691646 76692161 -78937959 + RLTR40 LTR ERVK 1 562 -255 2 1170 351 0 0 0 chr4 76692170 76692209 -78937911 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1170 431 145 12 0 chr4 76692214 76692297 -78937823 + GA-rich Low_complexity Low_complexity 1 84 0 3 1170 937 338 31 16 chr4 76692376 76692695 -78937425 + MTE2b LTR MaLR 51 374 -5 3 1170 202 206 14 14 chr4 76697170 76697239 -78932881 + CT-rich Low_complexity Low_complexity 1 69 0 3 1170 427 315 45 15 chr4 76699997 76700129 -78929991 + B1_Mur2 SINE Alu 1 136 -13 3 1170 360 43 0 0 chr4 76700134 76700180 -78929940 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 3 1170 437 306 60 50 chr4 76700197 76700379 -78929741 + B3A SINE B2 10 193 -5 3 1170 216 0 0 0 chr4 76700453 76700477 -78929643 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1170 710 65 0 0 chr4 76700477 76700570 -78929550 - B1_Mus2 SINE Alu 0 147 55 3 1170 234 161 0 125 chr4 76700527 76700591 -78929529 - RLTR25A LTR ERVK -532 571 516 3 1170 368 316 65 42 chr4 76700739 76701000 -78929120 + L1MEg LINE L1 1179 1445 -4639 3 1170 400 359 15 0 chr4 76701239 76701370 -78928750 - B1F1 SINE Alu 0 149 17 3 1170 337 313 160 24 chr4 76701435 76701641 -78928479 + L1M2 LINE L1 2230 2463 -3680 3 1170 3996 196 23 17 chr4 76702402 76703217 -78926903 - L1_Mur2 LINE L1 -218 5659 4840 3 1170 296 247 129 104 chr4 76703287 76703450 -78926670 - RMER12 LTR ERVK -160 1162 996 3 1170 437 0 19 0 chr4 76703456 76703509 -78926611 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1170 459 0 0 0 chr4 76703509 76703559 -78926561 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1170 4421 155 98 5 chr4 76703559 76704374 -78925746 - RMER12 LTR ERVK -431 891 1 3 1170 588 209 50 7 chr4 76704374 76704514 -78925606 - L1_Mur2 LINE L1 -1031 4846 4701 3 1170 876 185 47 16 chr4 76704512 76704704 -78925416 - L1_Mur2 LINE L1 -1825 4052 3855 3 1170 426 147 27 0 chr4 76704702 76704777 -78925343 + Lx5 LINE L1 5665 5741 -1309 3 1170 344 65 0 0 chr4 76704774 76704820 -78925300 - L1_Mm LINE L1 -4358 1525 1480 3 1170 4172 51 0 0 chr4 76704820 76705332 -78924788 + L1Md_F2 LINE L1 6071 6582 0 3 1170 1556 171 13 5 chr4 76705332 76705637 -78924483 + Lx5 LINE L1 5727 6055 -1405 3 1170 1649 239 9 0 chr4 76705646 76705981 -78924139 + Lx5 LINE L1 6219 6556 -494 3 1170 946 213 91 0 chr4 76705986 76706183 -78923937 + Lx9 LINE L1 7179 7393 -251 3 1170 2603 235 42 5 chr4 76706199 76706751 -78923369 + Lx5 LINE L1 6194 6765 -285 3 1170 462 18 0 0 chr4 76706751 76706806 -78923314 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1170 339 25 0 0 chr4 76706806 76706845 -78923275 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1170 1989 75 21 3 chr4 76706935 76707218 -78922902 - L1_Mus3 LINE L1 -5 6633 6346 3 1170 423 0 0 0 chr4 76708069 76708116 -78922004 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1170 35324 35 2 0 chr4 76708623 76714252 -78915868 + L1Md_T LINE L1 1 5589 -297 3 1170 8993 5 0 0 chr4 76714252 76715248 -78914872 + L1Md_T LINE L1 5590 6585 0 3 1170 28 48 0 0 chr4 76716006 76716048 -78914072 + AT_rich Low_complexity Low_complexity 1 42 0 3 1170 258 156 0 0 chr4 76717403 76717448 -78912672 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1170 1183 240 120 3 chr4 76717629 76717955 -78912165 - ORR1D1 LTR MaLR -4 370 7 3 1170 773 11 11 0 chr4 76718838 76718932 -78911188 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 1170 202 61 61 0 chr4 76718976 76719009 -78911111 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 3 1170 239 311 40 0 chr4 76719118 76719130 -78910990 - ID SINE ID -137 87 11 3 1170 264 290 16 0 chr4 76719130 76719192 -78910928 - ID4 SINE ID -10 73 11 3 1170 486 49 0 0 chr4 76719223 76719284 -78910836 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1170 283 33 65 16 chr4 76719346 76719408 -78910712 + (TTTTTG)n Simple_repeat Simple_repeat 1 65 0 3 1170 1097 305 50 41 chr4 76720598 76720994 -78909126 + Lx9 LINE L1 6745 7148 -496 3 1170 558 43 0 0 chr4 76720994 76721063 -78909057 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1170 1097 305 50 41 chr4 76721063 76721104 -78909016 + Lx9 LINE L1 7149 7186 -458 3 1170 405 0 0 0 chr4 76721260 76721305 -78908815 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1170 486 0 0 0 chr4 76721305 76721358 -78908762 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1170 347 346 19 0 chr4 76721358 76721538 -78908582 + Lx9 LINE L1 7142 7363 -281 3 1170 1515 154 3 32 chr4 76721531 76721813 -78908307 - Lx2B LINE L1 -597 6403 6130 3 1170 450 150 198 10 chr4 76721830 76721931 -78908189 - PB1D9 SINE Alu 0 120 1 3 1170 213 121 0 0 chr4 76721947 76721980 -78908140 + (TTA)n Simple_repeat Simple_repeat 3 35 0 3 1170 1118 69 0 0 chr4 76723358 76723502 -78906618 + B1_Mus1 SINE Alu 2 145 -3 3 1170 243 0 0 0 chr4 76723503 76723530 -78906590 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 3 1170 1154 82 0 0 chr4 76724623 76724769 -78905351 + B1_Mus2 SINE Alu 1 146 -1 3 1170 486 0 0 0 chr4 76724772 76724826 -78905294 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 3 1170 285 376 66 20 chr4 76725012 76725210 -78904910 - MIRb SINE MIR -58 210 4 3 1170 838 253 31 0 chr4 76726454 76726648 -78903472 + B3 SINE B2 16 215 -1 3 1170 811 328 38 52 chr4 76727903 76728382 -78901738 + Lx8 LINE L1 6963 7434 -39 3 1170 1445 282 26 140 chr4 76728530 76729369 -78900751 + Lx6 LINE L1 5724 6482 -568 3 1170 720 0 0 0 chr4 76729369 76729449 -78900671 + (GGA)n Simple_repeat Simple_repeat 3 82 0 3 1170 1684 274 79 24 chr4 76729449 76730050 -78900070 + Lx6 LINE L1 6483 7456 -4 3 1170 737 380 63 3 chr4 76731091 76731453 -78898667 + Tigger7 DNA MER2_type 18 401 -2090 3 1170 417 302 56 47 chr4 76731465 76731680 -78898440 + Tigger7 DNA MER2_type 2256 2472 -19 3 1170 465 143 11 0 chr4 76731855 76731946 -78898174 - L1_Mus3 LINE L1 -18 6620 6529 3 1170 297 227 25 51 chr4 76731962 76732041 -78898079 + Lx8 LINE L1 7210 7286 -187 3 1170 2448 188 2 16 chr4 76732122 76732224 -78897896 + L1VL4 LINE L1 484 585 -5717 3 1170 981 148 16 5 chr4 76732224 76732408 -78897712 + L1_Mus3 LINE L1 6435 6620 -18 3 1170 549 0 0 0 chr4 76732418 76732479 -78897641 + (GAA)n Simple_repeat Simple_repeat 2 62 0 3 1170 7626 166 20 20 chr4 76732479 76733011 -78897109 + L1VL4 LINE L1 595 1146 -2413 3 1170 4685 110 16 7 chr4 76733011 76733716 -78896404 + L1_Mus3 LINE L1 5928 6638 0 3 1170 7626 146 37 23 chr4 76733716 76734937 -78895183 + L1VL4 LINE L1 1147 2367 -1192 3 1170 5907 166 30 16 chr4 76734938 76736592 -78893528 + Lx2A1 LINE L1 4687 6363 -645 3 1170 5448 132 45 17 chr4 76736588 76738345 -78891775 - L1Md_F LINE L1 -3879 2004 206 3 1170 2081 82 3 7 chr4 76738765 76739058 -78891062 + L1_Mus2 LINE L1 6275 6566 0 3 1170 803 280 151 7 chr4 76739673 76739971 -78890149 - MTD LTR MaLR -61 358 18 3 1170 226 350 46 143 chr4 76740020 76740370 -78889750 + ORR1E LTR MaLR 1 316 -43 3 1170 3557 95 78 2 chr4 76740401 76740939 -78889181 - L1_Mus3 LINE L1 0 6638 6060 3 1170 531 295 14 14 chr4 76740970 76741111 -78889009 + B3A SINE B2 1 141 -57 3 1170 592 285 0 23 chr4 76741900 76742033 -78888087 - B1_Mur1 SINE Alu 0 149 20 3 1170 1574 103 30 15 chr4 76742034 76742299 -78887821 + L1Md_F2 LINE L1 6311 6579 -3 3 1170 412 350 40 20 chr4 76742651 76743097 -78887023 + L1MEf LINE L1 1537 1991 -4209 3 1170 323 376 117 39 chr4 76743566 76743746 -78886374 - B3 SINE B2 -10 206 13 3 1170 24 53 0 0 chr4 76743765 76743803 -78886317 + AT_rich Low_complexity Low_complexity 1 38 0 3 1170 541 306 24 14 chr4 76744231 76744443 -78885677 - B3 SINE B2 0 216 3 3 1170 1635 172 31 19 chr4 76744684 76744951 -78885169 + ORR1A3 LTR MaLR 1 268 -58 3 1170 5542 55 3 6 chr4 76744951 76745658 -78884462 + L1Md_F2 LINE L1 5878 6582 0 3 1170 1635 172 31 19 chr4 76745658 76745710 -78884410 + ORR1A3 LTR MaLR 269 323 -3 3 1170 978 112 0 17 chr4 76745957 76746138 -78883982 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1170 2475 242 29 15 chr4 76746503 76747104 -78883016 + RMER1B Other Other 102 1062 -4 3 1170 22 0 0 0 chr4 76747208 76747230 -78882890 + AT_rich Low_complexity Low_complexity 1 22 0 3 1170 1170 263 27 101 chr4 76747242 76747648 -78882472 + MTD LTR MaLR 6 381 -38 3 1170 278 196 41 0 chr4 76747668 76747765 -78882355 + G-rich Low_complexity Low_complexity 4 104 0 3 1170 397 271 45 27 chr4 76747801 76747911 -78882209 - B3A SINE B2 -83 115 4 3 1170 227 341 27 75 chr4 76749536 76749682 -78880438 - MER2 DNA MER2_type -7 338 200 3 1170 510 108 0 0 chr4 76749863 76749946 -78880174 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1170 522 320 60 0 chr4 76750088 76750288 -78879832 + B3 SINE B2 2 213 -3 3 1170 21 0 0 0 chr4 76753568 76753589 -78876531 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 214 167 0 0 chr4 76754048 76754084 -78876036 + (ATG)n Simple_repeat Simple_repeat 3 38 0 3 1170 4142 210 62 24 chr4 76754552 76755477 -78874643 + Lx4B LINE L1 6094 7053 -5 3 1170 21 57 0 0 chr4 76758184 76758219 -78871901 + AT_rich Low_complexity Low_complexity 1 35 0 3 1170 26 93 0 0 chr4 76758282 76758357 -78871763 + AT_rich Low_complexity Low_complexity 1 75 0 3 1170 207 162 0 0 chr4 76758465 76758502 -78871618 + (ATG)n Simple_repeat Simple_repeat 3 39 0 3 1170 34563 16 1 0 chr4 76758761 76762801 -78867319 + L1Md_T LINE L1 1545 5586 -297 3 1170 8233 36 12 0 chr4 76762801 76763785 -78866335 + L1Md_T LINE L1 5587 6582 0 3 1170 26 82 0 0 chr4 76763787 76763848 -78866272 + AT_rich Low_complexity Low_complexity 1 61 0 3 1170 700 286 94 16 chr4 76764602 76764847 -78865273 - Lx8 LINE L1 -21 7452 7189 3 1170 262 61 0 39 chr4 76765170 76765221 -78864899 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1170 636 162 60 48 chr4 76765540 76765708 -78864412 + Lx LINE L1 6460 6629 -25 3 1170 6825 88 32 25 chr4 76765875 76766899 -78863221 - L1_Mus3 LINE L1 0 6638 5608 3 1170 227 217 0 0 chr4 76768007 76768053 -78862067 - B3 SINE B2 -165 51 6 3 1170 387 0 0 0 chr4 76768176 76768219 -78861901 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1170 263 256 26 0 chr4 76768258 76768336 -78861784 + Lx9 LINE L1 7414 7493 -151 3 1170 828 174 22 34 chr4 76768426 76768449 -78861671 + RMER6B LTR ERVK 284 306 -155 3 1170 681 66 0 0 chr4 76768449 76768540 -78861580 + (GGA)n Simple_repeat Simple_repeat 1 91 0 3 1170 828 174 22 34 chr4 76768540 76768694 -78861426 + RMER6B LTR ERVK 307 458 -3 3 1170 525 16 0 0 chr4 76769212 76769274 -78860846 + (TAA)n Simple_repeat Simple_repeat 2 63 0 4 1170 717 350 27 16 chr4 76769491 76769749 -78860371 + MTE2a LTR MaLR 57 317 -62 4 1170 475 291 233 30 chr4 76769966 76770227 -78859893 - Lx9 LINE L1 -227 7417 7104 4 1170 877 244 58 4 chr4 76770216 76770491 -78859629 + Lx9 LINE L1 7228 7517 -127 4 1170 217 379 43 43 chr4 76770700 76770885 -78859235 + MIRb SINE MIR 75 259 -9 4 1170 735 313 38 3 chr4 76771408 76771700 -78858420 + Helitron2Na_Mam RC Helitron? 19 320 -4 4 1170 848 100 21 0 chr4 76771959 76772099 -78858021 - Lx3_Mus LINE L1 0 7009 6867 4 1170 3002 106 5 2 chr4 76772099 76772515 -78857605 + Lx3_Mus LINE L1 6432 6848 -161 4 1170 540 0 0 0 chr4 76772588 76772648 -78857472 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1170 190 213 31 21 chr4 76772648 76772744 -78857376 + GA-rich Low_complexity Low_complexity 2 98 0 4 1170 4701 90 19 3 chr4 76773699 76774380 -78855740 + L1_Mus3 LINE L1 5945 6636 -2 4 1170 26 50 0 0 chr4 76776629 76776669 -78853451 + AT_rich Low_complexity Low_complexity 1 40 0 4 1170 1523 183 16 32 chr4 76778169 76778480 -78851640 - Lx2A1 LINE L1 -2 7006 6701 4 1170 8593 174 28 10 chr4 76778480 76780132 -78849988 + L1_Mur2 LINE L1 4196 5877 0 4 1170 341 174 16 24 chr4 76780437 76780561 -78849559 + (TATG)n Simple_repeat Simple_repeat 2 124 0 4 1170 213 342 132 0 chr4 76780582 76780658 -78849462 - PB1D10 SINE Alu -10 107 22 4 1170 24 77 0 0 chr4 76780806 76780858 -78849262 + AT_rich Low_complexity Low_complexity 1 52 0 4 1170 387 0 0 0 chr4 76781036 76781079 -78849041 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 4 1170 207 0 0 0 chr4 76781168 76781191 -78848929 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 4 1170 438 349 23 0 chr4 76781265 76781397 -78848723 + B3A SINE B2 18 152 -46 4 1170 351 0 0 0 chr4 76781398 76781437 -78848683 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1170 22 63 0 31 chr4 76781445 76781481 -78848639 + AT_rich Low_complexity Low_complexity 1 36 0 4 1170 1119 69 0 0 chr4 76781481 76781625 -78848495 + B1_Mm SINE Alu 1 144 -3 4 1170 195 42 0 0 chr4 76781625 76781649 -78848471 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1170 22 63 0 31 chr4 76781649 76781676 -78848444 + AT_rich Low_complexity Low_complexity 1 26 0 4 1170 33 43 0 0 chr4 76781721 76781768 -78848352 + AT_rich Low_complexity Low_complexity 1 47 0 4 1170 1725 10 0 0 chr4 76782534 76782726 -78847394 + L1Md_T LINE L1 5395 5586 -297 4 1170 8379 37 0 0 chr4 76782726 76783722 -78846398 + L1Md_T LINE L1 5587 6582 0 4 1170 546 274 49 49 chr4 76783757 76783980 -78846140 + RLTR15 LTR ERVK 45 267 -92 4 1170 608 288 18 29 chr4 76784477 76784664 -78845456 - B3 SINE B2 0 216 35 4 1170 198 0 0 0 chr4 76784666 76784688 -78845432 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1170 772 187 132 12 chr4 76784778 76784967 -78845153 + MTD LTR MaLR 208 405 -14 4 1170 504 184 222 28 chr4 76786178 76786390 -78843730 + L1_Mur3 LINE L1 3015 3267 -2613 4 1170 279 88 43 14 chr4 76786835 76786904 -78843216 + (TTTG)n Simple_repeat Simple_repeat 4 74 0 4 1170 1171 57 0 0 chr4 76786915 76787056 -78843064 - B1_Mm SINE Alu -6 141 1 4 1170 303 85 0 0 chr4 76787350 76787397 -78842723 + (TTAA)n Simple_repeat Simple_repeat 1 47 0 4 1170 287 330 29 0 chr4 76787401 76787504 -78842616 - PB1D10 SINE Alu -8 109 4 4 1170 933 295 104 18 chr4 76787680 76788063 -78842057 - MTD LTR MaLR 0 419 4 4 1170 328 268 14 0 chr4 76788405 76788540 -78841580 - L1MB4 LINE L1 -4 6176 6039 4 1170 8511 67 1 1 chr4 76788572 76789669 -78840451 + L1Md_F2 LINE L1 4490 5586 -297 4 1170 8014 46 8 0 chr4 76789669 76790655 -78839465 + L1Md_F2 LINE L1 5587 6580 -2 4 1170 24 32 0 0 chr4 76790655 76790686 -78839434 + AT_rich Low_complexity Low_complexity 1 31 0 4 1170 27 29 0 0 chr4 76790784 76790818 -78839302 + AT_rich Low_complexity Low_complexity 1 34 0 4 1170 423 0 0 0 chr4 76790931 76790978 -78839142 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1170 488 104 15 46 chr4 76791143 76791274 -78838846 + (CAGAGA)n Simple_repeat Simple_repeat 6 132 0 4 1170 202 194 0 0 chr4 76791321 76791357 -78838763 + GA-rich Low_complexity Low_complexity 1 36 0 4 1170 1023 270 53 72 chr4 76791376 76791863 -78838257 - L1_Rod LINE L1 -39 5808 5331 4 1170 4406 161 18 90 chr4 76791893 76792889 -78837231 - L1_Mur2 LINE L1 -1163 4714 3791 4 1170 2012 231 74 4 chr4 76792883 76793356 -78836764 + Lx5 LINE L1 6545 7050 0 4 1170 783 197 7 45 chr4 76793701 76793855 -78836265 - B1_Mur2 SINE Alu 0 149 2 4 1170 82 0 0 0 chr4 76794469 76794551 -78835569 + AT_rich Low_complexity Low_complexity 1 82 0 4 1170 24 32 0 0 chr4 76796529 76796560 -78833560 + AT_rich Low_complexity Low_complexity 1 31 0 4 1170 563 185 0 8 chr4 76796983 76797103 -78833017 - Lx9 LINE L1 -8 7636 7518 4 1170 261 0 0 0 chr4 76797466 76797495 -78832625 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1170 408 222 6 13 chr4 76797495 76797658 -78832462 + (TG)n Simple_repeat Simple_repeat 1 161 0 4 1170 2544 46 15 0 chr4 76797858 76798184 -78831936 + IAPEY_LTR LTR ERVK 55 385 0 4 1170 509 316 33 19 chr4 76799896 76800106 -78830014 - B3 SINE B2 -1 215 3 4 1170 762 159 16 20 chr4 76800126 76800370 -78829750 + CT-rich Low_complexity Low_complexity 1 242 0 4 1170 468 0 0 0 chr4 76800385 76800437 -78829683 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1170 429 20 0 0 chr4 76800437 76800486 -78829634 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1170 393 342 39 39 chr4 76800500 76800655 -78829465 - RSINE1 SINE B4 -3 162 8 4 1170 185 0 40 0 chr4 76801333 76801358 -78828762 + (TTTTTG)n Simple_repeat Simple_repeat 6 31 0 4 1170 584 277 0 20 chr4 76801358 76801509 -78828611 - B1_Mur1 SINE Alu 0 149 2 4 1170 215 340 118 50 chr4 76802304 76802465 -78827655 - L2c LINE L2 -269 3118 2947 4 1170 2464 61 27 62 chr4 76803965 76804334 -78825786 + L1_Mus2 LINE L1 6209 6564 -2 4 1170 27 29 0 0 chr4 76804978 76805012 -78825108 + AT_rich Low_complexity Low_complexity 1 34 0 4 1170 1105 68 7 27 chr4 76805023 76805173 -78824947 - B1_Mm SINE Alu 0 147 1 4 1170 386 304 154 51 chr4 76805407 76805673 -78824447 + L1ME2 LINE L1 5624 5918 -246 4 1170 711 0 0 0 chr4 76805673 76805752 -78824368 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1170 386 304 154 51 chr4 76805752 76805856 -78824264 + L1ME2 LINE L1 5919 6032 -132 4 1170 332 192 39 0 chr4 76806660 76806764 -78823356 + (TA)n Simple_repeat Simple_repeat 1 108 0 4 1170 393 198 0 0 chr4 76806940 76807026 -78823094 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 146 708 294 200 33 chr4 76807779 76808483 -78821637 - L1MC1 LINE L1 -93 6240 5419 4 1171 715 204 55 29 chr4 76808505 76808743 -78821377 - Lx9 LINE L1 -1 7643 7400 4 1171 210 239 22 0 chr4 76808776 76808822 -78821298 - B1_Mus1 SINE Alu -70 78 32 4 1171 352 338 7 39 chr4 76809087 76809241 -78820879 - RSINE1 SINE B4 -15 150 2 4 1171 890 304 141 21 chr4 76809241 76809348 -78820772 - L1MC1 LINE L1 -902 5244 5149 4 1171 1402 267 17 17 chr4 76809348 76809767 -78820353 + MTD LTR MaLR 1 419 0 4 1171 890 304 141 21 chr4 76809767 76810636 -78819484 - L1MC1 LINE L1 -998 5148 4151 4 1171 192 40 0 0 chr4 76811963 76811988 -78818132 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 4 1171 400 266 219 0 chr4 76811993 76812176 -78817944 - RMER1B Other Other -24 1042 820 4 1171 244 355 37 9 chr4 76812261 76812369 -78817751 + B1F1 SINE Alu 38 148 -1 4 1171 21 57 0 0 chr4 76812426 76812461 -78817659 + AT_rich Low_complexity Low_complexity 1 35 0 4 1171 2129 144 14 8 chr4 76812472 76812830 -78817290 + Lx LINE L1 6294 6653 -1 4 1171 22 0 0 0 chr4 76813924 76813946 -78816174 + AT_rich Low_complexity Low_complexity 1 22 0 4 1171 253 282 0 0 chr4 76814023 76814094 -78816026 + L1MEf LINE L1 1535 1605 -4595 4 1171 482 0 17 0 chr4 76814561 76814619 -78815501 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1171 306 326 10 30 chr4 76815017 76815118 -78815002 + RLTR31_Mur LTR ERVK 455 553 0 4 1171 307 148 82 0 chr4 76815439 76815500 -78814620 + L1M5 LINE L1 5615 5680 -764 4 1171 204 239 27 9 chr4 76816510 76816620 -78813500 + CT-rich Low_complexity Low_complexity 5 116 0 4 1171 377 345 0 11 chr4 76816774 76816865 -78813255 - PB1D10 SINE Alu -27 90 1 4 1171 432 0 0 0 chr4 76816968 76817016 -78813104 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1171 392 0 21 0 chr4 76817016 76817063 -78813057 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1171 226 316 13 0 chr4 76817117 76817193 -78812927 + GA-rich Low_complexity Low_complexity 4 80 0 4 1171 180 0 0 0 chr4 76818698 76818718 -78811402 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1171 38 0 0 0 chr4 76820467 76820505 -78809615 + AT_rich Low_complexity Low_complexity 1 38 0 4 1171 1409 67 5 10 chr4 76820556 76820752 -78809368 - L1_Mus2 LINE L1 0 6566 6372 4 1171 405 0 0 0 chr4 76820753 76820798 -78809322 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1171 21 0 0 0 chr4 76820908 76820929 -78809191 + AT_rich Low_complexity Low_complexity 1 21 0 4 1171 312 48 0 0 chr4 76821116 76821158 -78808962 + (TTGG)n Simple_repeat Simple_repeat 3 44 0 4 1171 698 271 29 11 chr4 76821159 76821363 -78808757 - Lx5 LINE L1 -10 7040 6765 4 1171 230 286 14 41 chr4 76821576 76821649 -78808471 - ID4_ SINE ID -10 73 3 4 1171 46 62 0 0 chr4 76822697 76822778 -78807342 + AT_rich Low_complexity Low_complexity 1 81 0 4 1171 256 318 0 7 chr4 76822859 76822876 -78807244 + BC1_Mm scRNA scRNA 1 46 -106 4 1171 265 288 0 0 chr4 76822876 76822935 -78807185 + tRNA-Ala-GCY_ tRNA tRNA 9 67 -8 4 1171 256 318 0 7 chr4 76822935 76822947 -78807173 + BC1_Mm scRNA scRNA 47 85 -67 4 1171 189 0 0 0 chr4 76823381 76823402 -78806718 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1171 243 275 91 32 chr4 76823972 76824126 -78805994 + L1P5 LINE L1 5389 5551 -605 5 1171 186 167 0 0 chr4 76824139 76824175 -78805945 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1171 3836 107 62 0 chr4 76824275 76824875 -78805245 + Lx3_Mus LINE L1 6028 6664 -345 5 1171 1079 103 0 0 chr4 76824875 76825020 -78805100 + B1_Mus2 SINE Alu 1 145 -2 5 1171 2616 216 55 148 chr4 76825020 76825472 -78804648 + Lx3C LINE L1 6632 6976 0 5 1171 3071 45 3 3 chr4 76825836 76826217 -78803903 + L1Md_F3 LINE L1 6202 6582 -2 5 1171 24 0 0 0 chr4 76827549 76827573 -78802547 + AT_rich Low_complexity Low_complexity 1 24 0 5 1171 3766 86 6 4 chr4 76827832 76828358 -78801762 - L1_Mus3 LINE L1 -5 6633 6107 5 1171 368 253 141 89 chr4 76828444 76828622 -78801498 - Lx9 LINE L1 -1136 6508 6180 5 1171 423 0 0 0 chr4 76828622 76828669 -78801451 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1171 341 253 141 89 chr4 76828669 76828781 -78801339 - Lx9 LINE L1 -1294 6179 6067 5 1171 444 312 0 0 chr4 76828805 76828930 -78801190 + Lx9 LINE L1 6630 6754 -890 5 1171 1268 298 14 14 chr4 76829274 76829642 -78800478 + ORR1D2 LTR MaLR 1 368 -2 5 1171 807 314 26 74 chr4 76829642 76829992 -78800128 + ORR1E LTR MaLR 20 352 -7 5 1171 22 35 0 0 chr4 76830606 76830635 -78799485 + AT_rich Low_complexity Low_complexity 1 29 0 5 1171 459 0 0 0 chr4 76830893 76830944 -78799176 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1171 23 68 0 0 chr4 76831789 76831833 -78798287 + AT_rich Low_complexity Low_complexity 1 44 0 5 1171 213 246 35 0 chr4 76832103 76832160 -78797960 - MIR SINE MIR -12 250 192 5 1171 667 97 0 17 chr4 76832285 76832401 -78797719 + (TTTTC)n Simple_repeat Simple_repeat 1 114 0 5 1171 309 338 68 23 chr4 76832404 76832537 -78797583 - B1F1 SINE Alu -1 148 10 5 1171 1935 149 0 61 chr4 76832804 76833147 -78796973 + ORR1A3 LTR MaLR 1 322 -4 5 1171 534 37 12 0 chr4 76833339 76833481 -78796639 + L1Md_F3 LINE L1 6478 6584 0 5 1171 1076 245 174 15 chr4 76834697 76835024 -78795096 + RMER16 LTR ERVK 155 533 0 5 1171 1279 305 8 11 chr4 76835107 76835485 -78794635 - Lx6 LINE L1 -28 7432 7056 5 1171 1107 90 0 0 chr4 76835629 76835774 -78794346 + B1_Mm SINE Alu 1 145 -2 5 1171 1188 79 6 11 chr4 76835780 76835960 -78794160 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1171 25 65 0 0 chr4 76836362 76836408 -78793712 + AT_rich Low_complexity Low_complexity 1 46 0 5 1171 441 327 13 0 chr4 76837593 76837746 -78792374 + Lx8 LINE L1 6800 6954 -519 5 1171 343 327 62 85 chr4 76837765 76837942 -78792178 + Lx8 LINE L1 6929 7101 -372 5 1171 24 32 0 0 chr4 76840979 76841010 -78789110 + AT_rich Low_complexity Low_complexity 1 31 0 5 1171 186 150 0 0 chr4 76841368 76841408 -78788712 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1171 786 41 0 0 chr4 76841426 76841524 -78788596 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1171 270 0 0 0 chr4 76842905 76842935 -78787185 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1171 483 18 0 0 chr4 76842935 76842990 -78787130 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1171 663 310 25 0 chr4 76842995 76843153 -78786967 - B3A SINE B2 -35 163 2 5 1171 2412 237 207 61 chr4 76843249 76844454 -78785666 + Lx9 LINE L1 5760 7140 -504 5 1171 710 253 5 0 chr4 76844453 76844647 -78785473 + Lx9 LINE L1 7303 7497 -147 5 1171 28 0 0 0 chr4 76846354 76846382 -78783738 + AT_rich Low_complexity Low_complexity 1 28 0 5 1171 1913 136 15 21 chr4 76846386 76846724 -78783396 - Lx LINE L1 0 6654 6319 5 1171 2277 124 15 3 chr4 76846724 76847063 -78783057 + Lx LINE L1 5981 6323 -331 5 1171 679 193 30 6 chr4 76847090 76847257 -78782863 - Lx3A LINE L1 -7 6974 6804 5 1171 23 0 0 0 chr4 76847574 76847597 -78782523 + AT_rich Low_complexity Low_complexity 1 23 0 5 1171 5113 216 103 31 chr4 76849372 76849513 -78780607 + Lx4B LINE L1 5655 5786 -1272 5 1171 4596 101 5 0 chr4 76849513 76850159 -78779961 + L1_Mus3 LINE L1 5983 6631 -7 5 1171 5113 216 103 31 chr4 76850159 76851320 -78778800 + Lx4B LINE L1 5787 7050 -8 5 1171 45 34 0 0 chr4 76851528 76851587 -78778533 + AT_rich Low_complexity Low_complexity 1 59 0 5 1171 1338 247 109 14 chr4 76852024 76852381 -78777739 + MTD LTR MaLR 8 398 -21 5 1171 1330 249 76 24 chr4 76852366 76852736 -78777384 - MTD LTR MaLR -18 401 13 5 1171 24 0 0 0 chr4 76852825 76852849 -78777271 + AT_rich Low_complexity Low_complexity 1 24 0 5 1171 1315 339 141 13 chr4 76853513 76854343 -78775777 + Lx8 LINE L1 6357 7292 -181 5 1171 309 263 99 30 chr4 76854510 76854722 -78775398 + L1M5 LINE L1 5327 5562 -729 5 1171 227 281 88 0 chr4 76854818 76854901 -78775219 + L1M5 LINE L1 5703 5790 -510 5 1171 486 0 0 0 chr4 76854901 76854955 -78775165 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1171 227 281 88 0 chr4 76854955 76854985 -78775135 + L1M5 LINE L1 5791 5825 -475 5 1171 766 291 146 15 chr4 76856240 76856575 -78773545 + MTEa LTR MaLR 1 379 0 5 1171 603 98 0 0 chr4 76856912 76857004 -78773116 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1171 369 93 0 0 chr4 76857285 76857339 -78772781 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1171 545 328 152 9 chr4 76857339 76857570 -78772550 - B4 SINE B4 -25 267 4 5 1171 22372 167 34 27 chr4 76857607 76864330 -78765790 + Lx3_Mus LINE L1 4 7009 0 5 1171 1159 48 14 0 chr4 76864425 76864571 -78765549 + B1_Mus1 SINE Alu 1 148 0 5 1171 3916 177 15 68 chr4 76866108 76866472 -78763648 + RMER17A2 LTR ERVK 1 348 -558 5 1171 4128 88 10 7 chr4 76866472 76867054 -78763066 - L1Md_F2 LINE L1 -13 6569 5986 5 1171 3916 177 15 68 chr4 76867054 76867579 -78762541 + RMER17A2 LTR ERVK 349 842 -64 5 1171 287 276 63 13 chr4 76867668 76867826 -78762294 - L1MA4 LINE L1 -373 5927 5762 5 1171 3755 272 77 20 chr4 76867853 76869027 -78761093 + MMAR1 DNA Mariner 46 1285 -1 5 1171 345 148 0 16 chr4 76869321 76869370 -78760750 + HAL1-3A_ME LINE L1 1975 2023 -835 5 1171 550 79 11 11 chr4 76869370 76869460 -78760660 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1171 345 148 0 16 chr4 76869460 76869472 -78760648 + HAL1-3A_ME LINE L1 2024 2035 -823 5 1171 380 276 53 36 chr4 76869519 76869744 -78760376 - L1_Mur3 LINE L1 -3503 2377 2149 5 1171 376 304 23 46 chr4 76869761 76869892 -78760228 - RSINE1 SINE B4 -2 163 36 5 1171 4918 254 92 64 chr4 76870221 76872336 -78757784 + L1_Rod LINE L1 2810 5029 -818 5 1171 2079 192 19 26 chr4 76872336 76872797 -78757323 + RMER6B LTR ERVK 1 458 -3 5 1171 4918 254 92 64 chr4 76872797 76872982 -78757138 + L1_Rod LINE L1 5030 5210 -637 5 1171 261 0 0 0 chr4 76872982 76873011 -78757109 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1171 4918 254 92 64 chr4 76873011 76873124 -78756996 + L1_Rod LINE L1 5211 5291 -556 5 1171 966 188 71 12 chr4 76873772 76874041 -78756079 - RMER17C LTR ERVK -293 458 1 5 1171 24 53 0 0 chr4 76875759 76875797 -78754323 + AT_rich Low_complexity Low_complexity 1 38 0 5 1171 1519 162 14 7 chr4 76876337 76876617 -78753503 + Lx LINE L1 6373 6654 0 5 1171 313 61 0 0 chr4 76876762 76876811 -78753309 - MusHAL1 LINE L1 -2320 392 344 5 1171 5756 62 7 1 chr4 76876811 76877542 -78752578 + L1_Mus1 LINE L1 5828 6562 -5 5 1171 1332 56 11 0 chr4 76877548 76877728 -78752392 + L1Md_F2 LINE L1 6399 6580 -2 5 1171 229 312 0 13 chr4 76878194 76878272 -78751848 - Lx8 LINE L1 -1555 5918 5842 5 1171 489 161 0 0 chr4 76879628 76879715 -78750405 + GA-rich Low_complexity Low_complexity 2 88 0 5 1171 1079 75 0 20 chr4 76880492 76880503 -78749617 - B1_Mus2 SINE Alu 0 147 139 5 1171 257 0 30 0 chr4 76880503 76880536 -78749584 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1171 1079 75 0 20 chr4 76880536 76880673 -78749447 - B1_Mus2 SINE Alu -9 138 2 5 1171 23 0 0 0 chr4 76880850 76880873 -78749247 + AT_rich Low_complexity Low_complexity 1 23 0 5 1171 183 42 0 0 chr4 76881054 76881078 -78749042 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1171 754 91 9 0 chr4 76881078 76881188 -78748932 - B1_Mus1 SINE Alu -8 140 30 5 1171 204 296 25 0 chr4 76882529 76882610 -78747510 - MIRb SINE MIR -60 208 126 5 1171 959 139 7 0 chr4 76882833 76882977 -78747143 - B1_Mus2 SINE Alu -1 146 2 5 1171 299 400 14 28 chr4 76883294 76883438 -78746682 - RSINE1 SINE B4 -23 142 1 5 1171 234 0 0 0 chr4 76883727 76883753 -78746367 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 5 1171 492 263 137 31 chr4 76885056 76885217 -78744903 + B3A SINE B2 4 181 -17 5 1171 353 241 72 0 chr4 76885555 76885638 -78744482 + B3 SINE B2 3 91 -125 5 1171 192 226 0 0 chr4 76886301 76886363 -78743757 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1171 207 0 0 0 chr4 76887406 76887429 -78742691 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1171 2117 243 65 17 chr4 76889440 76889546 -78740574 + Lx9 LINE L1 6979 7083 -561 5 1171 458 46 0 15 chr4 76889546 76889612 -78740508 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1171 2117 243 65 17 chr4 76889612 76890141 -78739979 + Lx9 LINE L1 7084 7643 -1 5 1171 216 315 0 0 chr4 76890573 76890627 -78739493 + MER5A DNA MER1_type 58 111 -78 5 1171 5108 175 10 1 chr4 76891220 76892146 -78737974 + L1_Mur1 LINE L1 4951 5884 -2 5 1171 2421 191 66 19 chr4 76892170 76892697 -78737423 + Lx LINE L1 6096 6647 -7 5 1171 1237 172 8 32 chr4 76893003 76893249 -78736871 + MTC LTR MaLR 3 242 -179 5 1171 281 320 0 10 chr4 76893871 76893969 -78736151 + GA-rich Low_complexity Low_complexity 3 99 0 5 1171 243 125 0 0 chr4 76894745 76894785 -78735335 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1171 2383 171 40 20 chr4 76894939 76895391 -78734729 + RLTR25A LTR ERVK 1 461 -642 5 1171 3127 194 75 46 chr4 76895400 76896157 -78733963 + RLTR25A LTR ERVK 323 1101 -2 5 1171 441 138 10 60 chr4 76896545 76896645 -78733475 + Lx LINE L1 5685 5779 -875 5 1171 186 43 0 0 chr4 76896734 76896757 -78733363 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1171 564 254 162 15 chr4 76898102 76898374 -78731746 - L1M2 LINE L1 -994 5149 4838 5 1171 233 125 54 0 chr4 76898412 76898468 -78731652 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 1171 430 150 0 70 chr4 76898571 76898657 -78731463 - L1_Mm LINE L1 -245 5638 5559 5 1171 6808 103 73 5 chr4 76898605 76899635 -78730485 + L1_Mus3 LINE L1 5562 6638 0 5 1171 21 36 0 0 chr4 76900317 76900345 -78729775 + AT_rich Low_complexity Low_complexity 1 28 0 5 1171 216 0 0 0 chr4 76901415 76901439 -78728681 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1171 300 361 0 8 chr4 76902976 76903096 -78727024 - MLT1A1 LTR MaLR -3 405 287 6 1171 313 321 123 19 chr4 76903132 76903294 -78726826 - MLT1A1 LTR MaLR -229 179 1 6 1171 1022 270 56 32 chr4 76904109 76904484 -78725636 + ORR1C2 LTR MaLR 1 384 0 6 1171 320 282 105 61 chr4 76904854 76905035 -78725085 + MLT1K LTR MaLR 407 595 0 6 1171 224 329 31 43 chr4 76906079 76906203 -78723917 - MIR SINE MIR -89 179 49 6 1171 243 0 0 0 chr4 76906248 76906275 -78723845 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1171 21396 171 30 37 chr4 76906341 76907268 -78722852 + Lx2B LINE L1 1226 2158 -4842 6 1171 917 42 0 0 chr4 76907268 76907386 -78722734 + B1_Mus1 SINE Alu 31 148 0 6 1171 21396 171 30 37 chr4 76907386 76911900 -78718220 + Lx2B LINE L1 2159 6706 -294 6 1171 326 247 0 0 chr4 76911896 76911969 -78718151 - Lx7 LINE L1 -1707 5989 5917 6 1171 433 189 193 2 chr4 76911949 76912076 -78718044 + Lx7 LINE L1 5759 5909 -1551 6 1171 23 54 0 0 chr4 76912265 76912302 -78717818 + AT_rich Low_complexity Low_complexity 1 37 0 6 1171 321 123 0 0 chr4 76913027 76913092 -78717028 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 6 1171 6906 104 3 42 chr4 76913457 76914872 -78715248 - L1_Mus3 LINE L1 -9 6629 5268 6 1171 3742 65 6 32 chr4 76914872 76915400 -78714720 - L1Md_F2 LINE L1 0 6582 6069 6 1171 1285 58 0 23 chr4 76915393 76915570 -78714550 + L1Md_F2 LINE L1 6398 6570 -12 6 1171 4061 118 9 6 chr4 76915570 76915585 -78714535 - L1_Mus3 LINE L1 -616 5267 5254 6 1171 486 282 193 11 chr4 76915591 76915767 -78714353 + B3 SINE B2 9 216 0 6 1171 28 29 0 0 chr4 76916292 76916327 -78713793 + AT_rich Low_complexity Low_complexity 1 35 0 6 1171 21 0 0 0 chr4 76916679 76916700 -78713420 + AT_rich Low_complexity Low_complexity 1 21 0 6 1171 649 254 116 5 chr4 76916888 76917078 -78713042 + B3 SINE B2 4 214 -2 6 1171 281 328 16 0 chr4 76917916 76918041 -78712079 + L1MD LINE L1 5349 5475 -2520 6 1171 22 0 0 0 chr4 76918157 76918179 -78711941 + AT_rich Low_complexity Low_complexity 1 22 0 6 1171 22 0 0 0 chr4 76918988 76919010 -78711110 + AT_rich Low_complexity Low_complexity 1 22 0 6 1171 225 210 0 0 chr4 76919451 76919513 -78710607 + T-rich Low_complexity Low_complexity 1 62 0 6 1171 279 0 0 0 chr4 76919526 76919557 -78710563 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1171 451 312 62 9 chr4 76919825 76920035 -78710085 - MER2 DNA MER2_type -104 241 21 6 1171 23 33 0 0 chr4 76920912 76920942 -78709178 + AT_rich Low_complexity Low_complexity 1 30 0 6 1171 1327 238 87 9 chr4 76921109 76921456 -78708664 - ORR1D1 LTR MaLR 0 374 1 6 1171 234 0 0 0 chr4 76921706 76921732 -78708388 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 6 1171 2439 98 14 6 chr4 76921772 76922132 -78707988 - Lx3_Mus LINE L1 -1 7008 6646 6 1171 475 90 0 0 chr4 76922134 76922201 -78707919 + Lx3_Mus LINE L1 6598 6664 -345 6 1171 725 248 97 123 chr4 76922201 76922277 -78707843 - MTD LTR MaLR -88 331 263 6 1171 750 48 0 0 chr4 76922277 76922382 -78707738 + L1_Mus2 LINE L1 6461 6565 -1 6 1171 725 248 97 123 chr4 76922382 76922427 -78707693 - MTD LTR MaLR -157 262 244 6 1171 228 35 0 0 chr4 76922427 76922456 -78707664 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1171 725 248 97 123 chr4 76922456 76922673 -78707447 - MTD LTR MaLR -176 243 1 6 1171 681 13 0 0 chr4 76922806 76922884 -78707236 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1171 23 78 0 0 chr4 76923128 76923179 -78706941 + AT_rich Low_complexity Low_complexity 1 51 0 6 1171 533 330 19 14 chr4 76923344 76923559 -78706561 + B3 SINE B2 1 216 0 6 1171 4348 70 10 39 chr4 76926273 76926884 -78703236 + L1_Mus2 LINE L1 5974 6566 0 6 1171 8585 147 10 4 chr4 76926888 76928971 -78701149 + Lx2 LINE L1 4903 6997 0 6 1171 896 95 73 0 chr4 76929060 76929197 -78700923 + B1_Mm SINE Alu 1 147 0 6 1171 481 80 23 0 chr4 76929199 76929287 -78700833 + (CAAAA)n Simple_repeat Simple_repeat 2 91 0 6 1171 29 47 0 0 chr4 76930082 76930125 -78699995 + AT_rich Low_complexity Low_complexity 1 43 0 6 1171 450 0 0 0 chr4 76931567 76931617 -78698503 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1171 579 250 43 101 chr4 76932075 76932284 -78697836 + B3A SINE B2 1 197 -1 6 1171 3870 207 60 21 chr4 76932852 76933724 -78696396 + RMER13B LTR ERVK 1 906 -2 6 1171 290 264 88 61 chr4 76934167 76934300 -78695820 + B4A SINE B4 19 147 -77 6 1171 292 277 53 0 chr4 76934582 76934675 -78695445 + PB1D10 SINE Alu 12 111 -9 6 1171 439 260 56 11 chr4 76934957 76935136 -78694984 + L1_Rod LINE L1 918 1104 -6504 6 1171 261 304 11 28 chr4 76935214 76935390 -78694730 + L1_Rod LINE L1 1224 1396 -4451 6 1171 577 321 67 49 chr4 76935565 76936099 -78694021 + Lx8 LINE L1 5181 5724 -156 6 1171 38 22 0 0 chr4 76936120 76936165 -78693955 + AT_rich Low_complexity Low_complexity 1 45 0 6 1171 659 300 33 16 chr4 76936283 76936527 -78693593 + Lx8 LINE L1 6243 6490 -983 6 1171 525 324 52 0 chr4 76936530 76936703 -78693417 + Lx8 LINE L1 6806 6987 -486 6 1171 555 313 22 84 chr4 76937236 76937414 -78692706 + B3 SINE B2 1 167 -28 6 1171 483 320 56 26 chr4 76937442 76937747 -78692373 + L1M2 LINE L1 5471 5784 -507 6 1171 21 36 0 0 chr4 76937998 76938026 -78692094 + AT_rich Low_complexity Low_complexity 1 28 0 6 1171 297 0 0 0 chr4 76938618 76938651 -78691469 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1171 396 0 0 0 chr4 76938651 76938694 -78691426 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 146 5243 122 11 7 chr4 76939037 76939844 -78690276 + Lx2 LINE L1 6186 6995 -2 6 1172 21 82 0 0 chr4 76941545 76941594 -78688526 + AT_rich Low_complexity Low_complexity 1 49 0 6 1172 2736 262 77 102 chr4 76942011 76943669 -78686451 + Lx9 LINE L1 5691 7342 -302 6 1172 1504 306 37 29 chr4 76944729 76945290 -78684830 + Lx7 LINE L1 6767 7332 -364 6 1172 186 43 0 0 chr4 76945329 76945352 -78684768 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1172 218 184 0 0 chr4 76945379 76945417 -78684703 + GA-rich Low_complexity Low_complexity 4 41 0 6 1172 303 53 0 0 chr4 76945497 76945535 -78684585 - L1Md_T LINE L1 -327 6255 6218 6 1172 2138 59 3 27 chr4 76945535 76945830 -78684290 + L1Md_F2 LINE L1 6295 6582 0 6 1172 1147 80 0 0 chr4 76946242 76946490 -78683630 - L1_Mus2 LINE L1 0 6566 6405 6 1172 292 273 0 0 chr4 76946490 76946502 -78683618 + T-rich Low_complexity Low_complexity 2 13 0 6 1172 361 363 106 0 chr4 76946650 76946829 -78683291 - ID_B1 SINE B4 -8 216 19 6 1172 1247 238 94 21 chr4 76947205 76947544 -78682576 - ORR1D1 LTR MaLR -10 364 1 6 1172 2987 32 19 0 chr4 76947812 76948181 -78681939 - L1Md_F2 LINE L1 -520 6062 5687 6 1172 3730 72 28 12 chr4 76948181 76948688 -78681432 + L1Md_F2 LINE L1 6056 6570 -12 6 1172 330 167 0 0 chr4 76948962 76949022 -78681098 + (TTA)n Simple_repeat Simple_repeat 3 62 0 6 1172 1094 306 103 5 chr4 76949599 76950036 -78680084 + Lx9 LINE L1 6471 6950 -694 6 1172 2142 125 89 89 chr4 76950444 76950926 -78679194 + RLTR45 LTR ERVK 1 482 0 6 1172 3691 34 0 0 chr4 76951133 76951598 -78678522 - L1Md_T LINE L1 0 6582 6140 6 1172 21 0 0 0 chr4 76952140 76952161 -78677959 + AT_rich Low_complexity Low_complexity 1 21 0 6 1172 7112 132 73 4 chr4 76952161 76953344 -78676776 + Lx3A LINE L1 5713 6976 -5 6 1172 27 29 0 0 chr4 76953344 76953378 -78676742 + AT_rich Low_complexity Low_complexity 1 34 0 6 1172 29 0 0 0 chr4 76953491 76953520 -78676600 + AT_rich Low_complexity Low_complexity 1 29 0 6 1172 936 86 55 0 chr4 76953765 76953893 -78676227 + B1_Mus2 SINE Alu 1 135 -12 6 1172 375 23 0 0 chr4 76953894 76953938 -78676182 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 1172 2264 128 34 18 chr4 76954185 76954567 -78675553 + Lx LINE L1 6267 6654 0 6 1172 1977 139 12 21 chr4 76954808 76955146 -78674974 + Lx2 LINE L1 6662 6996 -1 6 1172 4118 175 56 47 chr4 76955462 76956412 -78673708 + RMER17B LTR ERVK 1 958 0 6 1172 2415 106 14 87 chr4 76956474 76956909 -78673211 + RLTR9D LTR ERVK 1 403 0 6 1172 504 146 0 0 chr4 76958537 76958626 -78671494 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 6 1172 429 156 0 0 chr4 76959079 76959156 -78670964 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1172 23 0 0 0 chr4 76960995 76961018 -78669102 + AT_rich Low_complexity Low_complexity 1 23 0 6 1172 664 294 59 25 chr4 76961784 76962021 -78668099 + B4A SINE B4 1 245 -47 6 1172 262 275 12 12 chr4 76962183 76962264 -78667856 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1172 3867 118 15 8 chr4 76963985 76964576 -78665544 - Lx LINE L1 -1 6653 6059 6 1172 505 340 74 33 chr4 76967303 76967574 -78662546 + RMER15 LTR ERVL 280 561 -14 6 1172 1706 171 9 62 chr4 76967910 76968246 -78661874 + ORR1A3 LTR MaLR 1 318 -8 6 1172 2401 199 90 21 chr4 76968251 76968774 -78661346 + ORR1A3-int LTR MaLR 2 560 -1403 6 1172 434 183 85 11 chr4 76968767 76968861 -78661259 + MT2B LTR ERVL 156 256 -345 6 1172 216 0 0 0 chr4 76968866 76968890 -78661230 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1172 244 261 0 0 chr4 76968932 76968978 -78661142 + B1_Mus2 SINE Alu 4 49 -98 6 1172 207 105 0 26 chr4 76968998 76969037 -78661083 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1172 6574 186 24 39 chr4 76969038 76971437 -78658683 + Lx2B LINE L1 4622 6999 -1 6 1172 1100 75 0 0 chr4 76971663 76971810 -78658310 + B1_Mus2 SINE Alu 1 147 0 6 1172 3215 53 22 2 chr4 76971851 76972268 -78657852 + L1Md_F3 LINE L1 6160 6584 0 6 1172 21 0 0 0 chr4 76973157 76973178 -78656942 + AT_rich Low_complexity Low_complexity 1 21 0 6 1172 256 253 101 0 chr4 76974313 76974392 -78655728 - RMER30 DNA MER1_type -1 201 115 6 1172 312 117 0 38 chr4 76976347 76976427 -78653693 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 6 1172 474 298 76 0 chr4 76976957 76977088 -78653032 + B3 SINE B2 55 195 -21 6 1172 42 20 0 0 chr4 76977092 76977141 -78652979 + AT_rich Low_complexity Low_complexity 1 49 0 6 1172 27 0 0 0 chr4 76979781 76979808 -78650312 + AT_rich Low_complexity Low_complexity 1 27 0 6 1172 279 222 0 0 chr4 76980054 76980135 -78649985 + (TA)n Simple_repeat Simple_repeat 2 82 0 7 1172 26 64 0 0 chr4 76980609 76980656 -78649464 + AT_rich Low_complexity Low_complexity 1 47 0 7 1172 21 36 0 0 chr4 76983326 76983354 -78646766 + AT_rich Low_complexity Low_complexity 1 28 0 7 1172 331 287 246 11 chr4 76983850 76984287 -78645833 - L1MB5 LINE L1 -16 6168 5630 7 1172 531 0 0 0 chr4 76984418 76984477 -78645643 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1172 633 256 89 18 chr4 76984906 76985094 -78645026 - B3A SINE B2 -17 199 1 7 1172 408 97 0 0 chr4 76985216 76985278 -78644842 + (TATG)n Simple_repeat Simple_repeat 3 64 0 7 1172 324 0 0 0 chr4 76987907 76987943 -78642177 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1172 444 19 0 0 chr4 76987959 76988012 -78642108 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1172 205 380 16 62 chr4 76989316 76989445 -78640675 - MIR SINE MIR -106 156 34 7 1172 756 314 38 77 chr4 76989593 76989959 -78640161 - ORR1E LTR MaLR -7 352 1 7 1172 461 221 43 31 chr4 76990816 76990979 -78639141 + L1M3 LINE L1 4535 4699 -1441 7 1172 22 0 0 0 chr4 76991115 76991137 -78638983 + AT_rich Low_complexity Low_complexity 1 22 0 7 1172 894 289 55 22 chr4 76992665 76993030 -78637090 + MTE2a LTR MaLR 1 377 -2 7 1172 656 35 23 0 chr4 76993621 76993707 -78636413 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 7 1172 1026 90 0 0 chr4 76993710 76993843 -78636277 - B1_Mus2 SINE Alu -13 134 2 7 1172 801 200 0 0 chr4 76995283 76995428 -78634692 + B1_Mur4 SINE Alu 1 145 -5 7 1172 564 15 0 0 chr4 76995429 76995494 -78634626 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1172 32 26 0 0 chr4 76995692 76995731 -78634389 + AT_rich Low_complexity Low_complexity 1 39 0 7 1172 996 96 0 0 chr4 76996140 76996286 -78633834 + (TG)n Simple_repeat Simple_repeat 2 147 0 7 1172 264 164 0 0 chr4 76996442 76996509 -78633611 + A-rich Low_complexity Low_complexity 1 67 0 7 1172 448 357 62 33 chr4 76996958 76997230 -78632890 + LTR79 LTR ERVL 243 522 -5 7 1172 26 50 0 0 chr4 76998893 76998933 -78631187 + AT_rich Low_complexity Low_complexity 1 40 0 7 1172 274 181 107 40 chr4 76998935 76999010 -78631110 + RLTR25B LTR ERVK 430 509 -519 7 1172 693 40 0 73 chr4 76998952 76999061 -78631059 + B1_Mus2 SINE Alu 47 147 0 7 1172 375 0 55 0 chr4 76999107 76999162 -78630958 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1172 23 33 0 0 chr4 76999268 76999298 -78630822 + AT_rich Low_complexity Low_complexity 1 30 0 7 1172 217 328 41 84 chr4 77000896 77001030 -78629090 - MIR SINE MIR -61 147 23 1 1172 2480 191 59 6 chr4 77003201 77003692 -78626428 + RMER5 LTR ERV1 18 534 0 2 1172 240 43 21 42 chr4 77003893 77003941 -78626179 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 3 1172 2577 40 0 9 chr4 77004168 77004493 -78625627 - L1Md_F3 LINE L1 -14 6570 6249 4 1172 189 0 0 0 chr4 77004642 77004663 -78625457 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1172 241 341 37 0 chr4 77005986 77006121 -78623999 + L1MB5 LINE L1 6020 6159 -15 6 1172 1330 75 0 0 chr4 77008202 77008376 -78621744 - L1_Mus1 LINE L1 0 6567 6394 7 1172 987 32 0 0 chr4 77009298 77009421 -78620699 + (TC)n Simple_repeat Simple_repeat 1 123 0 8 1172 311 349 196 31 chr4 77009599 77009718 -78620402 + L1MD2 LINE L1 5769 5876 -483 9 1172 204 40 0 0 chr4 77009718 77009743 -78620377 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1172 311 349 196 31 chr4 77009743 77010067 -78620053 + L1MD2 LINE L1 5877 6284 -75 9 1172 1966 335 74 16 chr4 77010835 77011754 -78618366 + Lx8 LINE L1 6314 7285 -188 1 1172 351 324 219 11 chr4 77011971 77012149 -78617971 - MLT-int LTR MaLR -1254 481 267 1 1172 320 283 56 9 chr4 77012159 77012266 -78617854 - MLT1A-int LTR MaLR -1256 115 4 1 1172 533 255 77 39 chr4 77012269 77012424 -78617696 - MLT1A LTR MaLR 0 374 214 1 1172 360 359 94 10 chr4 77012657 77012864 -78617256 - MLT1E2 LTR MaLR -128 552 328 1 1172 1878 172 61 13 chr4 77013592 77013970 -78616150 + Lx2B LINE L1 6308 6703 -297 1 1172 200 197 16 32 chr4 77014274 77014337 -78615783 + A-rich Low_complexity Low_complexity 2 63 0 1 1172 303 49 0 0 chr4 77015284 77015325 -78614795 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1172 4082 50 15 9 chr4 77017013 77017537 -78612583 - L1Md_F3 LINE L1 -19 6565 6039 1 1172 783 170 7 7 chr4 77018064 77018206 -78611914 - Lx2B LINE L1 -600 6400 6259 1 1172 439 273 0 15 chr4 77018211 77018341 -78611779 + Lx2B LINE L1 6868 6995 -5 2 1172 180 0 0 0 chr4 77018347 77018367 -78611753 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2 1172 1264 169 0 12 chr4 77018369 77018614 -78611506 - L1_Mur1 LINE L1 -1428 4449 4208 2 1172 17163 47 5 0 chr4 77018636 77021483 -78608637 - L1Md_F2 LINE L1 0 6582 3724 2 1172 2306 147 81 4 chr4 77021456 77021914 -78608206 - L1_Mur1 LINE L1 -1653 4233 3741 2 1172 3560 142 43 25 chr4 77021985 77022442 -78607678 + Lx3C LINE L1 4628 5107 -779 2 1172 2445 119 10 16 chr4 77022442 77022827 -78607293 + Lx LINE L1 6271 6653 -1 2 1172 3560 142 43 25 chr4 77022827 77023042 -78607078 + Lx3C LINE L1 5108 5312 -574 2 1172 6160 169 78 8 chr4 77023047 77024235 -78605885 + Lx3C LINE L1 5670 6941 -35 2 1172 42 77 0 0 chr4 77024887 77024978 -78605142 + AT_rich Low_complexity Low_complexity 1 91 0 2 1172 1718 204 26 36 chr4 77025009 77025395 -78604725 + RMER10B LTR ERVL 10 391 -7 2 1172 242 349 12 35 chr4 77025479 77025565 -78604555 - RSINE1 SINE B4 0 165 82 2 1172 662 35 12 0 chr4 77025577 77025662 -78604458 + (TTTA)n Simple_repeat Simple_repeat 3 88 0 2 1172 457 357 11 62 chr4 77025673 77025852 -78604268 - B4A SINE B4 -118 174 5 3 1172 340 315 28 0 chr4 77025919 77026027 -78604093 + PB1D10 SINE Alu 1 111 -6 3 1172 387 41 0 0 chr4 77026320 77026369 -78603751 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1172 974 297 54 33 chr4 77026969 77027300 -78602820 + MTE2b LTR MaLR 3 340 -39 3 1172 579 258 70 35 chr4 77028119 77028320 -78601800 + MLT1B LTR MaLR 1 208 -182 3 1172 1051 90 0 0 chr4 77028450 77028594 -78601526 + B1_Mus1 SINE Alu 5 148 0 3 1172 524 219 39 110 chr4 77028458 77028612 -78601508 + B4 SINE B4 97 239 -53 3 1172 2616 80 17 42 chr4 77028813 77029220 -78600900 - L1Md_F2 LINE L1 0 6582 6186 3 1172 835 101 0 0 chr4 77029374 77029493 -78600627 - B1_Mus1 SINE Alu -27 121 3 3 1172 243 238 169 44 chr4 77029493 77029527 -78600593 - RLTR25A LTR ERVK -623 480 430 3 1172 403 230 43 93 chr4 77029493 77029506 -78600614 - MT2B LTR ERVL -316 247 154 4 1172 1157 260 60 35 chr4 77029532 77029690 -78600430 - Lx9 LINE L1 -66 7578 7419 4 1172 333 0 0 0 chr4 77029690 77029727 -78600393 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1172 1157 260 60 35 chr4 77029727 77030019 -78600101 - Lx9 LINE L1 -226 7418 7117 4 1172 369 0 0 0 chr4 77030522 77030563 -78599557 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1172 729 102 0 0 chr4 77030563 77030670 -78599450 + (GA)n Simple_repeat Simple_repeat 1 108 0 4 1172 411 309 0 6 chr4 77030674 77030793 -78599327 - B4A SINE B4 -46 246 132 4 1172 498 75 0 0 chr4 77031007 77031074 -78599046 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1172 390 299 163 22 chr4 77032236 77032414 -78597706 + B3 SINE B2 1 203 -13 4 1172 213 132 0 0 chr4 77033016 77033054 -78597066 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1172 227 393 66 0 chr4 77033059 77033181 -78596939 + MIR3 SINE MIR 42 171 -37 4 1172 185 333 97 15 chr4 77033692 77033826 -78596294 + L2b LINE L2 3275 3419 -7 5 1172 1082 300 38 52 chr4 77034947 77035316 -78594804 + MT2A LTR ERVL 1 364 -169 5 1172 2282 113 16 24 chr4 77035477 77035849 -78594271 + Lx2 LINE L1 6614 6982 -15 5 1172 2292 149 34 5 chr4 77038296 77038733 -78591387 - L1_Mus3 LINE L1 -3 6997 6262 5 1172 2041 110 10 0 chr4 77038726 77039026 -78591094 + L1_Mus3 LINE L1 5855 6157 -481 5 1172 939 208 122 0 chr4 77039126 77039323 -78590797 - URR1A DNA MER1_type 0 226 6 5 1172 189 107 0 0 chr4 77039623 77039651 -78590469 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 5 1172 232 308 8 32 chr4 77039825 77039949 -78590171 - L1MC4a LINE L1 -117 7765 7645 5 1172 32 75 0 0 chr4 77039975 77040042 -78590078 + AT_rich Low_complexity Low_complexity 1 67 0 5 1172 32 75 0 0 chr4 77040136 77040203 -78589917 + AT_rich Low_complexity Low_complexity 1 67 0 5 1172 23 86 0 0 chr4 77040295 77040353 -78589767 + AT_rich Low_complexity Low_complexity 1 58 0 5 1172 210 365 0 0 chr4 77040674 77040726 -78589394 - B1F2 SINE Alu -88 61 10 6 1172 25 0 0 0 chr4 77040971 77040996 -78589124 + AT_rich Low_complexity Low_complexity 1 25 0 6 1172 6960 79 8 3 chr4 77042206 77043145 -78586975 - L1_Mus2 LINE L1 0 6566 5623 6 1172 1528 161 4 4 chr4 77043923 77044192 -78585928 + Lx LINE L1 6386 6654 0 6 1172 256 100 67 0 chr4 77044372 77044432 -78585688 + T-rich Low_complexity Low_complexity 2 65 0 6 1172 231 191 0 0 chr4 77045282 77045345 -78584775 + T-rich Low_complexity Low_complexity 2 64 0 6 1172 435 174 0 0 chr4 77045341 77045427 -78584693 + CT-rich Low_complexity Low_complexity 5 90 0 6 1172 499 278 53 53 chr4 77047651 77047760 -78582360 - RMER30 DNA MER1_type -1 201 89 6 1172 189 0 0 0 chr4 77047760 77047781 -78582339 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 1172 499 278 53 53 chr4 77047781 77047842 -78582278 - RMER30 DNA MER1_type -114 88 31 6 1172 3648 291 143 71 chr4 77047886 77049789 -78580331 + Charlie12 DNA MER1_type 426 2502 -371 6 1172 201 121 0 0 chr4 77049789 77049822 -78580298 + (TATAG)n Simple_repeat Simple_repeat 1 33 0 7 1172 3648 291 143 71 chr4 77049822 77050023 -78580097 + Charlie12 DNA MER1_type 2503 2710 -163 6 1172 783 283 19 5 chr4 77050023 77050236 -78579884 + B3 SINE B2 1 216 0 7 1172 3648 291 143 71 chr4 77050236 77050401 -78579719 + Charlie12 DNA MER1_type 2711 2860 -13 6 1172 3479 104 68 2 chr4 77050707 77051263 -78578857 + MusHAL1 LINE L1 65 657 -2697 7 1172 22 35 0 0 chr4 77051391 77051420 -78578700 + AT_rich Low_complexity Low_complexity 1 29 0 7 1172 564 305 22 35 chr4 77052873 77053101 -78577019 + Lx8 LINE L1 5629 5853 -1620 7 1172 369 0 0 0 chr4 77053615 77053656 -78576464 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1172 439 321 7 0 chr4 77053811 77053951 -78576169 + B4A SINE B4 133 273 -19 7 1172 426 85 0 0 chr4 77054006 77054065 -78576055 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1172 204 40 0 0 chr4 77054065 77054089 -78576031 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1172 180 0 0 0 chr4 77054405 77054425 -78575695 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1172 309 26 0 0 chr4 77054543 77054581 -78575539 + (CTA)n Simple_repeat Simple_repeat 1 38 0 8 1172 225 0 0 0 chr4 77055406 77055431 -78574689 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 1172 1870 239 62 26 chr4 77056239 77056346 -78573774 + RLTR12A LTR ERVK 9 116 -452 8 1172 1140 47 0 0 chr4 77056346 77056495 -78573625 + L1Md_A LINE L1 6434 6582 0 8 1172 1870 239 62 26 chr4 77056495 77056915 -78573205 + RLTR12A LTR ERVK 117 555 -13 8 1172 239 239 0 0 chr4 77056949 77056995 -78573125 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1172 306 138 0 0 chr4 77056999 77057057 -78573063 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1172 463 116 157 26 chr4 77058049 77058164 -78571956 - Lx2B LINE L1 -6 6994 6865 8 1172 183 293 59 35 chr4 77058814 77058899 -78571221 - L3b LINE CR1 -115 367 281 8 1172 6209 85 10 69 chr4 77060087 77060250 -78569870 + L1Md_F2 LINE L1 323 483 -6133 8 1172 1728 53 13 0 chr4 77060250 77060476 -78569644 - L1Md_T LINE L1 0 6582 6354 8 1172 32513 75 2 12 chr4 77060476 77065637 -78564483 + L1Md_F2 LINE L1 484 5585 -298 8 1172 8184 38 1 5 chr4 77065638 77066636 -78563484 + L1Md_F2 LINE L1 5587 6580 -2 8 1172 783 183 0 17 chr4 77068617 77068795 -78561325 + GA-rich Low_complexity Low_complexity 4 178 0 9 1172 21 0 0 0 chr4 77068910 77068931 -78561189 + AT_rich Low_complexity Low_complexity 1 21 0 9 1172 333 211 13 0 chr4 77069055 77069131 -78560989 - L1M2 LINE L1 -481 5810 5734 9 1172 642 26 0 0 chr4 77069284 77069360 -78560760 + (TC)n Simple_repeat Simple_repeat 1 76 0 9 1172 513 0 0 0 chr4 77069466 77069523 -78560597 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 1172 885 272 24 36 chr4 77069523 77069771 -78560349 + Lx7 LINE L1 6193 6437 -1259 9 1173 234 0 0 0 chr4 77070625 77070651 -78559469 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1173 2913 131 11 13 chr4 77071097 77071569 -78558551 - RLTR31B_Mm LTR ERVK -86 471 1 9 1173 324 0 0 0 chr4 77072125 77072161 -78557959 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 1173 755 276 25 10 chr4 77072174 77072375 -78557745 - ID_B1 SINE B4 -8 216 13 9 1173 285 265 23 40 chr4 77072606 77072779 -78557341 + T-rich Low_complexity Low_complexity 3 172 0 1 1173 2647 199 21 5 chr4 77074608 77075169 -78554951 - L1_Mur2 LINE L1 -353 5524 4955 1 1173 960 258 53 25 chr4 77075166 77075484 -78554636 + Lx5 LINE L1 5918 6244 -806 1 1173 2485 193 96 51 chr4 77075493 77076311 -78553809 + ORR1A2-int LTR MaLR 1049 1850 -113 1 1173 1818 133 16 20 chr4 77076564 77076870 -78553250 + Lx LINE L1 6348 6652 -2 1 1173 1411 174 100 50 chr4 77076895 77077349 -78552771 + ORR1A2 LTR MaLR 5 394 0 1 1173 1590 222 6 12 chr4 77077352 77077676 -78552444 + Lx5 LINE L1 6298 6619 -431 1 1173 1084 93 7 7 chr4 77077677 77077829 -78552291 - L1_Mus1 LINE L1 -287 6280 6129 1 1173 2278 47 0 4 chr4 77077829 77078143 -78551977 + L1_Mus1 LINE L1 6285 6567 0 1 1173 546 16 0 0 chr4 77078164 77078227 -78551893 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1173 1740 236 46 27 chr4 77078235 77078649 -78551471 + Lx5 LINE L1 6619 7040 -10 1 1173 237 108 0 0 chr4 77079170 77079207 -78550913 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1173 460 294 45 52 chr4 77079224 77079378 -78550742 - B3A SINE B2 -38 160 8 1 1173 513 181 166 13 chr4 77080650 77080801 -78549319 + Lx3C LINE L1 6785 6958 -18 1 1173 1076 119 0 5 chr4 77080804 77081024 -78549096 + (GAAA)n Simple_repeat Simple_repeat 1 219 0 1 1173 333 0 0 0 chr4 77081098 77081135 -78548985 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1173 517 59 0 0 chr4 77081137 77081205 -78548915 - B1_Mm SINE Alu 0 147 80 1 1173 211 267 0 26 chr4 77081321 77081335 -78548785 + A-rich Low_complexity Low_complexity 1 13 0 1 1173 1096 82 7 7 chr4 77081335 77081482 -78548638 + B1_Mm SINE Alu 1 147 0 1 1173 211 267 0 26 chr4 77081482 77081544 -78548576 + A-rich Low_complexity Low_complexity 14 75 0 1 1173 604 293 122 97 chr4 77081828 77083118 -78547002 + L1M3 LINE L1 2400 3677 -2463 1 1173 832 102 7 7 chr4 77083118 77083266 -78546854 + (GAAAA)n Simple_repeat Simple_repeat 3 150 0 1 1173 604 293 122 97 chr4 77083266 77083450 -78546670 + L1M3 LINE L1 3678 3910 -2230 1 1173 229 143 0 0 chr4 77083505 77083547 -78546573 + PB1D10 SINE Alu 32 73 -44 1 1173 286 264 134 13 chr4 77083660 77083817 -78546303 + L1M3 LINE L1 4006 4181 -1959 1 1173 632 99 0 0 chr4 77085227 77085328 -78544792 - L1_Mus2 LINE L1 0 6566 6466 1 1173 530 111 11 0 chr4 77085901 77085991 -78544129 + L1_Mus2 LINE L1 6474 6564 -2 1 1173 441 0 0 0 chr4 77086232 77086281 -78543839 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1173 221 196 0 18 chr4 77086281 77086338 -78543782 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1 1173 360 0 0 0 chr4 77086637 77086677 -78543443 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1173 1502 214 11 53 chr4 77086677 77087053 -78543067 - Lx LINE L1 -19 6635 6276 1 1173 2571 83 53 5 chr4 77088482 77088856 -78541264 + MTB LTR MaLR 1 392 -8 1 1173 21 89 0 0 chr4 77089329 77089385 -78540735 + AT_rich Low_complexity Low_complexity 1 56 0 1 1173 439 336 75 5 chr4 77089920 77090132 -78539988 + ERVL-E-int LTR ERVL 2198 2424 -3243 1 1173 477 0 0 0 chr4 77090186 77090239 -78539881 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1173 378 0 0 0 chr4 77090239 77090280 -78539840 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1173 186 128 0 0 chr4 77091417 77091456 -78538664 + (TATG)n Simple_repeat Simple_repeat 1 39 0 1 1173 4081 131 50 33 chr4 77091658 77092453 -78537667 - RMER17D2 LTR ERVK 0 809 1 1 1173 247 239 56 0 chr4 77092802 77092873 -78537247 + MIR SINE MIR 164 238 -24 1 1173 973 66 81 0 chr4 77093228 77093364 -78536756 + B1_Mm SINE Alu 1 147 0 1 1173 315 0 0 0 chr4 77094283 77094318 -78535802 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1173 315 0 0 0 chr4 77094318 77094352 -78535768 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1173 200 86 29 0 chr4 77095365 77095400 -78534720 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1173 292 312 350 58 chr4 77095402 77095628 -78534492 - B4 SINE B4 0 292 1 1 1173 1077 98 0 0 chr4 77095934 77096108 -78534012 + (CCA)n Simple_repeat Simple_repeat 3 176 0 1 1173 192 111 0 0 chr4 77096108 77096144 -78533976 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1173 21 0 0 0 chr4 77097463 77097484 -78532636 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 2549 152 0 41 chr4 77097533 77097998 -78532122 + Lx3A LINE L1 6533 6978 -3 1 1173 220 303 0 43 chr4 77098307 77098376 -78531744 - PB1D9 SINE Alu -17 103 38 1 1173 450 0 0 0 chr4 77099236 77099286 -78530834 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1173 654 79 0 0 chr4 77100976 77101065 -78529055 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 1 1173 198 171 0 0 chr4 77101070 77101111 -78529009 + CT-rich Low_complexity Low_complexity 2 42 0 1 1173 2257 113 3 0 chr4 77101223 77101541 -78528579 - ORR1A2 LTR MaLR -8 319 1 1 1173 694 330 22 37 chr4 77102351 77102622 -78527498 + B4A SINE B4 20 286 -6 1 1173 444 19 0 0 chr4 77102665 77102718 -78527402 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1173 830 104 48 0 chr4 77103240 77103365 -78526755 + B1_Mus1 SINE Alu 2 132 -16 1 1173 1071 64 0 0 chr4 77103365 77103505 -78526615 + (GA)n Simple_repeat Simple_repeat 1 140 0 1 1173 956 217 35 0 chr4 77103758 77103956 -78526164 + Lx6 LINE L1 6264 6468 -992 1 1173 1161 185 119 36 chr4 77103953 77104247 -78525873 + Lx7 LINE L1 6460 6905 -791 1 1173 247 260 135 24 chr4 77105222 77105348 -78524772 - MER58B DNA MER1_type -121 220 81 1 1173 469 324 26 46 chr4 77105351 77105503 -78524617 - B3 SINE B2 -67 149 1 1 1173 1750 261 90 7 chr4 77105606 77106153 -78523967 + Lx9 LINE L1 6327 6918 -726 1 1173 803 250 4 56 chr4 77106174 77106441 -78523679 - Lx7 LINE L1 0 7696 7444 1 1173 295 157 0 0 chr4 77106441 77106492 -78523628 + Lx9 LINE L1 6930 6980 -664 1 1173 612 299 17 26 chr4 77106512 77106742 -78523378 + Lx9 LINE L1 7051 7278 -366 1 1173 23 0 0 0 chr4 77106944 77106967 -78523153 + AT_rich Low_complexity Low_complexity 1 23 0 1 1173 217 275 25 0 chr4 77107396 77107476 -78522644 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1173 515 315 39 43 chr4 77107682 77107961 -78522159 - B4 SINE B4 -13 279 2 1 1173 499 95 54 0 chr4 77108460 77108534 -78521586 - L1_Mus1 LINE L1 -520 6047 5970 1 1173 1709 56 0 0 chr4 77108534 77108750 -78521370 + L1_Mus1 LINE L1 6351 6566 -1 1 1173 186 43 0 0 chr4 77109164 77109187 -78520933 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1173 234 0 0 0 chr4 77109503 77109529 -78520591 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1173 21 0 0 0 chr4 77109573 77109594 -78520526 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 386 296 121 23 chr4 77111076 77111249 -78518871 + MamRep605 Unknown Unknown 600 789 -87 1 1173 31 96 0 0 chr4 77111362 77111456 -78518664 + AT_rich Low_complexity Low_complexity 1 94 0 1 1173 395 254 26 129 chr4 77111491 77111723 -78518397 + L1MA7 LINE L1 5791 6000 -303 1 1173 237 209 15 15 chr4 77112372 77112440 -78517680 + (TAAA)n Simple_repeat Simple_repeat 4 71 0 1 1173 860 285 88 43 chr4 77112765 77113139 -78516981 + Lx8 LINE L1 6707 7097 -376 1 1173 307 340 9 28 chr4 77113674 77113783 -78516337 + Lx8 LINE L1 7105 7211 -262 1 1173 474 325 67 89 chr4 77114239 77114286 -78515834 + B4 SINE B4 7 43 -249 1 1173 5036 48 2 2 chr4 77114286 77114911 -78515209 - L1Md_F2 LINE L1 -5 6577 5953 1 1173 474 325 67 89 chr4 77114911 77115042 -78515078 + B4 SINE B4 44 181 -111 1 1173 507 33 0 0 chr4 77115189 77115250 -78514870 + (GGA)n Simple_repeat Simple_repeat 3 63 0 1 1173 251 296 164 74 chr4 77115331 77115641 -78514479 + Lx8 LINE L1 7134 7471 -2 1 1173 195 42 0 0 chr4 77115743 77115767 -78514353 + (GAGAA)n Simple_repeat Simple_repeat 4 27 0 1 1173 991 258 71 92 chr4 77116654 77117089 -78513031 + RMER6B LTR ERVK 36 461 0 1 1173 216 97 0 0 chr4 77117595 77117626 -78512494 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 1 1173 2754 206 50 44 chr4 77117674 77118335 -78511785 - RMER6C LTR ERVK 0 690 25 1 1173 3366 23 8 0 chr4 77118335 77118728 -78511392 + MTA_Mm LTR MaLR 1 396 0 1 1173 2754 206 50 44 chr4 77118728 77118752 -78511368 - RMER6C LTR ERVK -666 24 1 1 1173 24 0 0 0 chr4 77118859 77118883 -78511237 + AT_rich Low_complexity Low_complexity 1 24 0 1 1173 944 35 20 40 chr4 77118920 77119069 -78511051 + L1Md_F3 LINE L1 6438 6583 -1 1 1173 298 295 48 16 chr4 77119898 77120022 -78510098 + B1F SINE Alu 5 132 -17 1 1173 381 258 99 68 chr4 77122406 77122568 -78507552 + Lx8 LINE L1 6214 6380 -1093 1 1173 542 275 104 75 chr4 77122572 77122745 -78507375 + B4A SINE B4 36 216 -76 1 1173 1289 291 99 22 chr4 77123422 77123917 -78506203 + Lx8 LINE L1 6431 6963 -510 1 1173 1218 244 24 45 chr4 77123944 77124278 -78505842 + RLTR40 LTR ERVK 482 808 -9 1 1173 243 152 0 0 chr4 77124282 77124328 -78505792 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1173 23 0 0 0 chr4 77124622 77124645 -78505475 + AT_rich Low_complexity Low_complexity 1 23 0 1 1173 22 0 0 0 chr4 77125012 77125034 -78505086 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 252 0 0 0 chr4 77125045 77125073 -78505047 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1173 192 179 0 0 chr4 77125285 77125324 -78504796 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1173 1012 23 30 0 chr4 77127628 77127761 -78502359 + (GAGAA)n Simple_repeat Simple_repeat 1 137 0 1 1173 271 0 51 0 chr4 77128305 77128344 -78501776 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1173 241 337 39 84 chr4 77129185 77129363 -78500757 + MLT1G1 LTR MaLR 142 311 -268 1 1173 367 277 0 0 chr4 77130711 77130823 -78499297 + CT-rich Low_complexity Low_complexity 1 112 0 1 1173 345 352 111 11 chr4 77130824 77131005 -78499115 - B4A SINE B4 -8 284 86 1 1173 257 305 33 17 chr4 77131093 77131213 -78498907 + LTR41 LTR ERVL 641 762 -6 1 1173 1461 231 87 21 chr4 77131747 77132128 -78497992 + MTD LTR MaLR 1 406 -13 1 1173 1189 61 0 0 chr4 77132348 77132495 -78497625 - B1_Mus2 SINE Alu 0 147 1 1 1173 2037 116 6 23 chr4 77132944 77133288 -78496832 + L1_Mus3 LINE L1 6296 6633 -5 1 1173 3584 37 2 0 chr4 77133283 77133714 -78496406 + L1Md_T LINE L1 6150 6581 -1 1 1173 540 30 0 0 chr4 77134038 77134104 -78496016 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1173 22 0 0 0 chr4 77134387 77134409 -78495711 + AT_rich Low_complexity Low_complexity 1 22 0 2 1173 233 340 20 20 chr4 77134555 77134657 -78495463 - L2c LINE L2 -1 3386 3285 2 1173 390 85 0 0 chr4 77134813 77134872 -78495248 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1173 658 344 26 0 chr4 77136741 77136936 -78493184 + ID_B1 SINE B4 12 211 -13 2 1173 3095 164 49 35 chr4 77137060 77137653 -78492467 + MT2B LTR ERVL 1 601 0 2 1173 386 272 92 42 chr4 77138115 77138257 -78491863 - B1F2 SINE Alu 0 149 1 2 1173 1281 241 28 3 chr4 77138377 77138664 -78491456 + Lx5 LINE L1 6757 7050 0 2 1173 23 33 0 0 chr4 77138669 77138699 -78491421 + AT_rich Low_complexity Low_complexity 1 30 0 2 1173 1233 100 0 0 chr4 77139000 77139369 -78490751 + (CA)n Simple_repeat Simple_repeat 1 369 0 2 1173 186 43 0 0 chr4 77141224 77141247 -78488873 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1173 558 29 0 0 chr4 77141248 77141316 -78488804 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1173 2181 291 119 18 chr4 77142244 77143156 -78486964 + Lx8 LINE L1 6469 7473 0 2 1173 36758 29 4 7 chr4 77145493 77150686 -78479434 + L1Md_T LINE L1 415 5586 -297 2 1173 8302 38 0 1 chr4 77150686 77151683 -78478437 + L1Md_T LINE L1 5587 6582 0 2 1173 274 286 13 0 chr4 77151912 77151989 -78478131 + ID4 SINE ID 6 83 0 2 1173 3979 135 75 26 chr4 77152373 77152544 -78477576 + Lx4A LINE L1 5120 5297 -580 2 1173 1284 98 5 5 chr4 77152544 77152729 -78477391 + B2_Mm1t SINE B2 3 187 -6 2 1173 3979 135 75 26 chr4 77152729 77152741 -78477379 + Lx4A LINE L1 5298 5305 -572 2 1173 2779 41 6 23 chr4 77152741 77153093 -78477027 + ORR1A1 LTR MaLR 1 346 0 2 1173 12934 72 16 3 chr4 77153093 77154861 -78475259 + ORR1A1-int LTR MaLR 1 1792 0 2 1173 2743 64 0 6 chr4 77154861 77155209 -78474911 + ORR1A1 LTR MaLR 1 346 0 2 1173 8353 146 59 11 chr4 77155209 77156867 -78473253 + Lx4A LINE L1 5306 7051 -7 2 1173 657 278 137 33 chr4 77157248 77157460 -78472660 + ORR1D2 LTR MaLR 84 317 -53 2 1173 423 0 0 0 chr4 77157474 77157521 -78472599 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1173 1140 282 21 53 chr4 77157521 77157896 -78472224 + Lx5 LINE L1 6649 7011 -39 2 1173 288 0 0 0 chr4 77158310 77158342 -78471778 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1173 491 298 25 15 chr4 77158345 77158546 -78471574 - B3 SINE B2 -13 203 1 2 1173 317 312 53 35 chr4 77159344 77159457 -78470663 - PB1D10 SINE Alu 0 117 3 2 1173 249 298 162 12 chr4 77159539 77159638 -78470482 - B1F1 SINE Alu -3 117 2 2 1173 253 299 13 0 chr4 77159827 77159904 -78470216 + B4 SINE B4 102 179 -113 2 1173 968 246 5 23 chr4 77162591 77162811 -78467309 + B3 SINE B2 1 216 0 2 1173 5032 103 18 0 chr4 77163193 77163918 -78466202 + L1_Mus3 LINE L1 5895 6632 -6 2 1173 28 0 0 0 chr4 77164701 77164729 -78465391 + AT_rich Low_complexity Low_complexity 1 28 0 2 1173 220 228 21 11 chr4 77165598 77165691 -78464429 + CT-rich Low_complexity Low_complexity 3 96 0 2 1173 426 276 26 58 chr4 77165793 77165947 -78464173 - B1_Mur3 SINE Alu 0 149 1 2 1173 3066 213 39 41 chr4 77166888 77167603 -78462517 + RMER6D LTR ERVK 1 714 -6 2 1173 342 300 142 0 chr4 77168535 77168655 -78461465 - B3A SINE B2 -60 138 2 2 1173 261 0 0 0 chr4 77168689 77168718 -78461402 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1173 432 0 0 0 chr4 77168718 77168765 -78461355 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1173 783 257 6 11 chr4 77169126 77169307 -78460813 - ORR1E LTR MaLR -178 181 2 2 1173 1038 225 132 32 chr4 77171069 77171409 -78458711 + ORR1D1 LTR MaLR 1 374 0 2 1173 329 0 0 24 chr4 77171486 77171528 -78458592 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 1173 578 14 0 14 chr4 77171528 77171600 -78458520 + (TTC)n Simple_repeat Simple_repeat 3 73 0 2 1173 776 118 7 0 chr4 77171584 77171720 -78458400 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 1173 435 221 24 0 chr4 77172657 77172784 -78457336 - Lx7 LINE L1 0 7696 7567 2 1173 3191 92 11 4 chr4 77172840 77173296 -78456824 + L1_Mus2 LINE L1 6108 6566 0 2 1173 206 0 69 0 chr4 77173314 77173343 -78456777 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1173 258 208 0 36 chr4 77173551 77173606 -78456514 - MER52-int LTR ERV1 -5 7086 7034 2 1173 2063 197 20 10 chr4 77174697 77175096 -78455024 - ORR1B1 LTR MaLR -5 389 1 2 1173 1435 151 155 0 chr4 77175760 77176038 -78454082 + ORR1A4 LTR MaLR 1 321 -8 2 1173 29 28 0 0 chr4 77177599 77177635 -78452485 + AT_rich Low_complexity Low_complexity 1 36 0 2 1173 243 0 0 0 chr4 77177647 77177674 -78452446 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1173 425 171 0 12 chr4 77179898 77179981 -78450139 - Lx7 LINE L1 -4 7692 7611 2 1173 558 334 122 23 chr4 77180584 77180970 -78449150 + MER82 DNA MER2_type 212 635 -18 2 1173 209 227 0 0 chr4 77181419 77181463 -78448657 + T-rich Low_complexity Low_complexity 1 44 0 2 1173 252 358 57 39 chr4 77181463 77181707 -78448413 + MIR SINE MIR 14 253 -9 2 1173 303 275 119 112 chr4 77181774 77181934 -78448186 + Tigger5 DNA MER2_type 96 256 -2150 2 1173 544 336 46 57 chr4 77182035 77182297 -78447823 - B4 SINE B4 0 292 34 2 1173 273 323 154 45 chr4 77182546 77182747 -78447373 + MIRc SINE MIR 17 239 -29 2 1173 242 146 18 18 chr4 77186578 77186634 -78443486 + HAL1 LINE L1 2116 2171 -336 2 1173 333 0 0 0 chr4 77186915 77186952 -78443168 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1173 2408 113 80 25 chr4 77187219 77187655 -78442465 + Lx LINE L1 6193 6652 -2 2 1173 1775 326 79 39 chr4 77189139 77189593 -78440527 - Lx8 LINE L1 -200 7273 6792 2 1173 1746 198 21 49 chr4 77189593 77189981 -78440139 + ORR1C1 LTR MaLR 1 377 -1 2 1173 1775 326 79 39 chr4 77189981 77190557 -78439563 - Lx8 LINE L1 -682 6791 6202 2 1173 26 50 0 0 chr4 77190806 77190846 -78439274 + AT_rich Low_complexity Low_complexity 1 40 0 2 1173 527 295 28 28 chr4 77191701 77191905 -78438215 - B3A SINE B2 0 216 6 2 1173 1023 62 8 0 chr4 77192644 77192773 -78437347 + B1_Mus1 SINE Alu 1 130 -18 2 1173 348 24 0 0 chr4 77192781 77192822 -78437298 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2 1173 181 292 76 15 chr4 77192834 77192900 -78437220 - L3 LINE CR1 -1443 3046 2977 2 1173 213 65 0 0 chr4 77193038 77193069 -78437051 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 2 1173 522 31 0 0 chr4 77193069 77193133 -78436987 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1173 326 357 34 23 chr4 77193335 77193510 -78436610 - L1M5 LINE L1 -370 5754 5578 2 1173 3421 157 25 0 chr4 77194799 77195397 -78434723 - Lx5 LINE L1 -196 5681 5069 2 1173 5077 227 52 39 chr4 77195392 77196090 -78434030 + Lx5 LINE L1 5697 6359 -691 2 1173 3171 53 2 5 chr4 77196090 77196487 -78433633 - MTA_Mm LTR MaLR 0 396 1 2 1173 5077 227 52 39 chr4 77196487 77197106 -78433014 + Lx5 LINE L1 6360 7030 -20 2 1173 375 78 0 0 chr4 77197106 77197157 -78432963 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1173 767 11 11 0 chr4 77197505 77197597 -78432523 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 1173 477 253 63 117 chr4 77198185 77198391 -78431729 - B3A SINE B2 0 198 4 2 1173 432 0 0 0 chr4 77199213 77199261 -78430859 + (TTA)n Simple_repeat Simple_repeat 2 49 0 2 1173 8242 41 1 4 chr4 77199330 77200677 -78429443 - L1Md_F2 LINE L1 0 6582 5240 2 1174 343 231 13 0 chr4 77201502 77201580 -78428540 - MTEb LTR MaLR 0 379 301 2 1174 1528 260 199 4 chr4 77201570 77202072 -78428048 - MTE-int LTR MaLR -59 1521 922 2 1174 993 321 169 31 chr4 77202090 77202642 -78427478 - MTE-int LTR MaLR -860 720 93 2 1174 767 282 134 30 chr4 77202663 77202723 -78427397 + RMER15 LTR ERVL 11 70 -505 2 1174 669 25 0 0 chr4 77202723 77202802 -78427318 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1174 767 283 131 32 chr4 77202802 77203194 -78426926 + RMER15 LTR ERVL 71 558 -17 2 1174 355 265 31 0 chr4 77203437 77203535 -78426585 - MTE2b LTR MaLR -263 116 16 2 1174 442 304 7 48 chr4 77203665 77203810 -78426310 - ID_B1 SINE B4 -53 171 33 2 1174 651 48 0 0 chr4 77204121 77204204 -78425916 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1174 333 0 0 0 chr4 77204498 77204535 -78425585 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1174 2019 216 75 48 chr4 77205511 77206071 -78424049 + RMER15 LTR ERVL 1 575 0 2 1174 426 321 164 9 chr4 77206087 77206307 -78423813 - B4A SINE B4 -8 284 31 2 1174 180 416 65 0 chr4 77206730 77206884 -78423236 - L2 LINE L2 -927 2492 2329 2 1174 1272 64 0 0 chr4 77207443 77207740 -78422380 + (CA)n Simple_repeat Simple_repeat 1 297 0 2 1174 3381 87 88 0 chr4 77208422 77209235 -78420885 - L1_Mus3 LINE L1 -356 6282 5398 2 1174 2214 108 51 8 chr4 77209235 77209591 -78420529 + L1_Mus3 LINE L1 6259 6629 -9 2 1174 890 232 83 29 chr4 77210539 77210889 -78419231 + Lx9 LINE L1 7275 7643 -1 2 1174 265 100 40 0 chr4 77210890 77210940 -78419180 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1174 226 291 11 92 chr4 77212841 77212928 -78417192 + MLT2B3 LTR ERVL 63 142 -412 2 1174 1616 194 76 15 chr4 77213059 77213585 -78416535 - RLTR20B2 LTR ERVK -2 558 1 2 1174 561 30 0 0 chr4 77213982 77214049 -78416071 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1174 464 310 20 14 chr4 77214228 77214375 -78415745 - B1_Mur1 SINE Alu -1 148 1 2 1174 41 36 0 0 chr4 77214377 77214432 -78415688 + AT_rich Low_complexity Low_complexity 1 55 0 2 1174 584 342 29 39 chr4 77214825 77215312 -78414808 + L1M2 LINE L1 3540 4021 -2122 2 1174 1232 258 132 13 chr4 77215318 77215689 -78414431 - MTD LTR MaLR -31 388 1 2 1174 285 327 19 0 chr4 77215691 77215798 -78414322 - MTD-int LTR MaLR -2 1256 1148 2 1174 365 282 155 33 chr4 77215799 77216070 -78414050 + L1M2 LINE L1 4503 4806 -1337 2 1174 1894 223 48 5 chr4 77216074 77216470 -78413650 - MTC LTR MaLR -8 413 1 2 1174 297 51 0 0 chr4 77216498 77216537 -78413583 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1174 284 311 59 0 chr4 77216559 77216678 -78413442 + L1M2 LINE L1 4837 4962 -1178 2 1174 21 36 0 0 chr4 77216741 77216769 -78413351 + AT_rich Low_complexity Low_complexity 1 28 0 2 1174 484 182 87 8 chr4 77217033 77217160 -78412960 - Lx2 LINE L1 -1 6996 6860 3 1174 3840 156 18 11 chr4 77217156 77218072 -78412048 - Lx2 LINE L1 -897 6100 5180 3 1174 414 0 0 0 chr4 77218080 77218126 -78411994 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1174 380 284 118 36 chr4 77218126 77218406 -78411714 + Lx6 LINE L1 4899 5264 -882 3 1174 324 0 0 0 chr4 77218439 77218475 -78411645 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1174 359 224 23 12 chr4 77218507 77218593 -78411527 + MTC LTR MaLR 1 87 -334 3 1174 699 308 105 14 chr4 77218666 77219192 -78410928 + Lx6 LINE L1 5308 5891 -1753 3 1174 273 182 0 0 chr4 77219207 77219262 -78410858 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1174 2809 9 3 0 chr4 77220626 77220947 -78409173 + RLTRETN_Mm LTR ERVK 1 322 0 3 1174 38155 22 1 6 chr4 77220947 77225819 -78404301 + MMETn-int LTR ERVK 1 4844 0 3 1174 2725 12 9 0 chr4 77225819 77226138 -78403982 + RLTRETN_Mm LTR ERVK 1 322 0 3 1174 945 257 182 49 chr4 77228597 77229332 -78400788 + L1_Rod LINE L1 890 1704 -4143 3 1174 282 29 0 0 chr4 77229332 77229367 -78400753 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1174 945 242 264 24 chr4 77229367 77229547 -78400573 + L1_Rod LINE L1 1705 1932 -3915 3 1174 653 281 79 55 chr4 77229562 77230092 -78400028 + L1_Rod LINE L1 2744 3286 -2561 3 1174 284 149 0 108 chr4 77230085 77230168 -78399952 + L1_Mur2 LINE L1 4597 4670 -1207 3 1174 531 194 11 5 chr4 77230157 77230269 -78399851 - Lx6 LINE L1 -1058 6638 6518 3 1174 2335 262 19 8 chr4 77230267 77230798 -78399322 + Lx6 LINE L1 6923 7459 -1 3 1174 3428 208 22 24 chr4 77230938 77231768 -78398352 + RMER1B Other Other 177 1066 0 3 1174 548 262 19 80 chr4 77231799 77231972 -78398148 + L1_Rod LINE L1 5260 5434 -446 3 1174 987 152 0 0 chr4 77231972 77232150 -78397970 + GA-rich Low_complexity Low_complexity 3 180 0 3 1174 548 267 18 80 chr4 77232150 77232257 -78397863 + L1_Rod LINE L1 5409 5536 -344 3 1174 210 208 42 0 chr4 77232262 77232310 -78397810 + CT-rich Low_complexity Low_complexity 4 53 0 3 1174 23 0 0 0 chr4 77232533 77232556 -78397564 + AT_rich Low_complexity Low_complexity 1 23 0 3 1174 480 323 8 0 chr4 77233058 77233188 -78396932 + RSINE1 SINE B4 4 134 -31 3 1174 27 49 0 0 chr4 77233200 77233241 -78396879 + AT_rich Low_complexity Low_complexity 1 41 0 3 1174 873 223 296 0 chr4 77233748 77233857 -78396263 + ORR1C1 LTR MaLR 1 176 -202 3 1174 576 0 0 0 chr4 77233857 77233921 -78396199 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1174 873 223 296 0 chr4 77233921 77234102 -78396018 + ORR1C1 LTR MaLR 177 376 -2 3 1174 5461 162 24 31 chr4 77234341 77235446 -78394674 + L1Md_T LINE L1 108 1205 -5411 3 1174 36336 32 0 0 chr4 77235452 77239869 -78390251 + L1Md_T LINE L1 1170 5586 -297 3 1174 7917 56 1 0 chr4 77239869 77240863 -78389257 + L1Md_T LINE L1 5587 6581 -1 3 1174 487 81 0 0 chr4 77240865 77240939 -78389181 + L1_Mus3 LINE L1 6563 6636 -2 3 1174 8633 144 10 12 chr4 77242645 77243752 -78386368 + L1VL4 LINE L1 3240 3474 -2403 3 1174 203 61 0 29 chr4 77243752 77243786 -78386334 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 1174 8633 177 16 21 chr4 77243786 77244154 -78385966 + L1VL4 LINE L1 3475 3845 -2032 3 1174 257 0 30 0 chr4 77244154 77244187 -78385933 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1174 8633 177 16 21 chr4 77244187 77245381 -78384739 + L1VL4 LINE L1 3846 5024 -853 3 1174 7221 95 20 13 chr4 77245401 77246442 -78383678 + L1_Mus4 LINE L1 5587 6634 -2 3 1174 204 111 0 0 chr4 77247118 77247154 -78382966 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1174 810 252 38 34 chr4 77247222 77247534 -78382586 + ORR1D1 LTR MaLR 1 374 0 3 1174 21 0 0 0 chr4 77248731 77248752 -78381368 + AT_rich Low_complexity Low_complexity 1 21 0 3 1174 216 0 0 0 chr4 77249736 77249760 -78380360 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1174 3012 61 5 20 chr4 77249984 77250386 -78379734 + MTA_Mm LTR MaLR 1 396 0 3 1174 7008 85 46 3 chr4 77250386 77250732 -78379388 + MTA_Mm-int LTR MaLR 1 350 -748 3 1174 1780 52 13 0 chr4 77250732 77250962 -78379158 + L1Md_F2 LINE L1 6350 6582 0 3 1174 7008 85 46 3 chr4 77250962 77251668 -78378452 + MTA_Mm-int LTR MaLR 351 1097 -1 3 1174 2633 40 113 19 chr4 77251668 77252030 -78378090 + MTA_Mm LTR MaLR 1 396 0 3 1174 464 308 99 30 chr4 77252091 77252395 -78377725 + L1M2 LINE L1 4851 5175 -968 3 1174 846 266 104 46 chr4 77252802 77253230 -78376890 + RMER13A LTR ERVK 2 498 -410 3 1174 296 288 34 77 chr4 77254117 77254248 -78375872 + MTEb LTR MaLR 205 329 -50 3 1174 29 70 0 0 chr4 77254517 77254574 -78375546 + AT_rich Low_complexity Low_complexity 1 57 0 3 1174 211 176 0 0 chr4 77255579 77255613 -78374507 + (CAG)n Simple_repeat Simple_repeat 2 35 0 3 1174 1042 244 78 16 chr4 77255847 77256155 -78373965 + RMER5 LTR ERV1 13 339 -195 3 1174 1636 177 3 3 chr4 77256155 77256456 -78373664 - Lx LINE L1 -6 6648 6348 3 1174 6709 153 27 4 chr4 77256473 77257819 -78372301 + Lx LINE L1 4628 6008 -646 3 1174 514 285 8 0 chr4 77257837 77257960 -78372160 + RMER5 LTR ERV1 362 485 -49 3 1174 316 239 43 52 chr4 77258315 77258430 -78371690 - L1M4 LINE L1 -3643 2503 2390 3 1174 21 36 0 0 chr4 77259622 77259650 -78370470 + AT_rich Low_complexity Low_complexity 1 28 0 3 1174 477 0 0 0 chr4 77259974 77260027 -78370093 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1174 218 368 40 0 chr4 77260300 77260376 -78369744 - ID4_ SINE ID -2 81 3 3 1174 626 265 46 75 chr4 77260719 77260793 -78369327 + RLTR40 LTR ERVK 18 88 -729 3 1174 1773 237 2 59 chr4 77260793 77261236 -78368884 + MTC LTR MaLR 4 421 0 3 1174 626 265 46 75 chr4 77261236 77261442 -78368678 + RLTR40 LTR ERVK 89 290 -527 3 1174 372 226 75 9 chr4 77261435 77261542 -78368578 + RLTR40 LTR ERVK 649 762 -55 3 1174 468 0 0 0 chr4 77262508 77262560 -78367560 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1174 680 246 14 14 chr4 77262803 77262951 -78367169 + B1_Mur3 SINE Alu 1 148 -1 3 1174 2696 214 10 5 chr4 77263062 77263669 -78366451 - Lx5 LINE L1 -679 5198 4589 3 1174 2818 236 44 37 chr4 77263671 77264798 -78365322 + Lx5 LINE L1 5223 6402 -648 3 1174 1069 328 60 44 chr4 77264832 77265314 -78364806 + Lx5 LINE L1 6945 7434 -26 3 1174 22 70 0 0 chr4 77266799 77266842 -78363278 + AT_rich Low_complexity Low_complexity 1 43 0 3 1174 4683 105 17 24 chr4 77266969 77268289 -78361831 + L1VL4 LINE L1 216 1524 -2035 3 1174 15446 177 24 8 chr4 77268277 77269849 -78360271 + Lx LINE L1 2754 4342 -1535 3 1174 3050 70 2 2 chr4 77269849 77270249 -78359871 + MTB LTR MaLR 1 400 0 3 1174 15446 173 31 5 chr4 77270249 77272480 -78357640 + Lx LINE L1 4343 6654 0 3 1174 22 35 0 0 chr4 77272904 77272933 -78357187 + AT_rich Low_complexity Low_complexity 1 29 0 3 1174 39 0 0 0 chr4 77273975 77274014 -78356106 + AT_rich Low_complexity Low_complexity 1 39 0 3 1174 607 300 70 42 chr4 77274142 77274427 -78355693 - MER2 DNA MER2_type -27 318 26 3 1174 1301 297 68 8 chr4 77274560 77274944 -78355176 + MTD LTR MaLR 5 411 -8 3 1174 192 77 0 0 chr4 77276534 77276560 -78353560 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 3 1174 341 367 49 35 chr4 77277005 77277208 -78352912 - B4A SINE B4 -22 270 65 3 1174 376 356 56 15 chr4 77277343 77277540 -78352580 + B3 SINE B2 9 213 -3 3 1174 828 105 32 39 chr4 77277587 77277628 -78352492 + B1_Mus2 SINE Alu 35 147 -164 3 1174 288 159 16 16 chr4 77277628 77277692 -78352428 + 4.5SRNA scRNA scRNA 23 86 -8 3 1174 828 105 32 39 chr4 77277692 77277742 -78352378 + B1_Mus2 SINE Alu 148 293 -18 3 1174 219 36 0 0 chr4 77277742 77277770 -78352350 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1174 400 341 7 14 chr4 77279640 77279780 -78350340 + B1F1 SINE Alu 1 139 -10 3 1174 249 33 0 0 chr4 77279799 77279829 -78350291 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1174 23 0 0 0 chr4 77279854 77279877 -78350243 + AT_rich Low_complexity Low_complexity 1 23 0 3 1174 453 36 0 0 chr4 77279986 77280041 -78350079 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1174 264 111 0 0 chr4 77280375 77280420 -78349700 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1174 500 259 165 41 chr4 77280735 77280991 -78349129 + MTD LTR MaLR 81 368 -11 3 1174 2313 88 3 0 chr4 77281385 77281693 -78348427 + L1_Mus1 LINE L1 6117 6425 -142 3 1174 207 0 0 0 chr4 77281951 77281974 -78348146 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1174 858 95 0 38 chr4 77281989 77282120 -78348000 - B1_Mus1 SINE Alu -21 127 2 3 1174 1001 116 7 0 chr4 77284013 77284159 -78345961 - B1_Mus2 SINE Alu 0 147 1 3 1174 404 192 19 0 chr4 77287093 77287197 -78342923 + Lx9 LINE L1 7527 7632 -12 3 1174 535 313 20 29 chr4 77287303 77287507 -78342613 - RMER12 LTR ERVK 0 1322 1121 3 1174 1489 225 118 67 chr4 77287568 77288007 -78342113 - RMER12 LTR ERVK -85 1237 758 3 1174 279 0 0 0 chr4 77288007 77288038 -78342082 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 3 1174 1489 225 118 67 chr4 77288038 77288121 -78341999 - RMER12 LTR ERVK -565 757 688 3 1174 251 222 24 24 chr4 77288122 77288205 -78341915 - L1M2 LINE L1 -481 5810 5728 3 1174 33 0 0 0 chr4 77288919 77288952 -78341168 + AT_rich Low_complexity Low_complexity 1 33 0 3 1174 5608 145 36 1 chr4 77289055 77290024 -78340096 + Lx3B LINE L1 5967 6969 -4 3 1174 21 36 0 0 chr4 77290975 77291003 -78339117 + AT_rich Low_complexity Low_complexity 1 28 0 3 1174 22 0 0 0 chr4 77291728 77291750 -78338370 + AT_rich Low_complexity Low_complexity 1 22 0 3 1174 510 17 0 0 chr4 77293952 77294011 -78336109 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1174 214 384 105 13 chr4 77295859 77296012 -78334108 - MIRb SINE MIR -9 259 93 3 1174 400 302 174 40 chr4 77296439 77296663 -78333457 + MLT1A LTR MaLR 88 341 -33 3 1174 21 0 0 0 chr4 77296782 77296803 -78333317 + AT_rich Low_complexity Low_complexity 1 21 0 3 1174 643 141 12 139 chr4 77297790 77297955 -78332165 + Lx3C LINE L1 6809 6952 -24 3 1174 607 83 9 0 chr4 77299216 77299324 -78330796 - Lx3_Mus LINE L1 0 7009 6901 3 1174 340 307 11 69 chr4 77299326 77299501 -78330619 - MLT1B LTR MaLR -214 176 12 3 1174 505 360 12 0 chr4 77302810 77302982 -78327138 + MER5A DNA MER1_type 16 189 0 3 1174 331 280 113 57 chr4 77303086 77303298 -78326822 - LTR37A LTR ERV1 -110 316 93 3 1174 21 36 0 0 chr4 77303982 77304010 -78326110 + AT_rich Low_complexity Low_complexity 1 28 0 3 1174 222 37 0 0 chr4 77304114 77304141 -78325979 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1174 22 0 0 0 chr4 77304306 77304328 -78325792 + AT_rich Low_complexity Low_complexity 1 22 0 3 1174 261 0 0 0 chr4 77305096 77305125 -78324995 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1174 533 107 0 13 chr4 77305129 77305205 -78324915 - Lx2B LINE L1 -615 6385 6311 3 1174 2438 223 0 20 chr4 77305203 77305701 -78324419 + Lx2B LINE L1 6390 6877 -123 3 1174 1080 214 185 0 chr4 77305754 77306067 -78324053 - Lx7 LINE L1 -371 7325 6955 3 1174 236 267 125 29 chr4 77306067 77306171 -78323949 + ORR1B2 LTR MaLR 111 224 -143 3 1174 322 326 20 0 chr4 77308365 77308463 -78321657 + AmnSINE1 SINE SINE 93 192 -383 3 1174 390 303 30 0 chr4 77309037 77309136 -78320984 - MER63A DNA AcHobo -62 148 47 4 1174 287 380 87 90 chr4 77309269 77309558 -78320562 - B4A SINE B4 0 292 5 4 1174 25 65 0 0 chr4 77309879 77309925 -78320195 + AT_rich Low_complexity Low_complexity 1 46 0 4 1174 1362 231 48 0 chr4 77311700 77311990 -78318130 + ORR1A1 LTR MaLR 1 304 -42 4 1174 4791 37 0 0 chr4 77311995 77312564 -78317556 + L1Md_T LINE L1 6014 6582 0 4 1174 1168 49 7 0 chr4 77312589 77312733 -78317387 + B1_Mm SINE Alu 1 145 -2 4 1174 414 91 0 0 chr4 77312771 77312826 -78317294 + ORR1A1 LTR MaLR 272 326 0 4 1174 741 168 0 14 chr4 77312835 77312974 -78317146 + Lx4B LINE L1 5875 6011 -1047 4 1174 2471 100 18 44 chr4 77312971 77313357 -78316763 + L1_Mus4 LINE L1 6143 6518 -118 4 1174 1665 246 168 14 chr4 77313391 77313874 -78316246 + Lx4A LINE L1 6466 7022 -36 4 1174 291 354 8 17 chr4 77314270 77314388 -78315732 + B4 SINE B4 170 286 -6 4 1174 373 314 63 5 chr4 77314477 77314666 -78315454 + L1MC LINE L1 4675 4874 -1272 4 1174 229 260 160 10 chr4 77314770 77314891 -78315229 + L1MC LINE L1 5164 5309 -837 4 1174 207 0 0 0 chr4 77314891 77314914 -78315206 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1174 229 260 160 10 chr4 77314914 77314986 -78315134 + L1MC LINE L1 5310 5386 -760 4 1174 335 306 62 38 chr4 77315933 77316149 -78313971 + L1MC3 LINE L1 7283 7490 -295 4 1174 2152 138 0 39 chr4 77317435 77317790 -78312330 - Lx LINE L1 -54 6600 6260 4 1174 21 0 0 0 chr4 77318580 77318601 -78311519 + AT_rich Low_complexity Low_complexity 1 21 0 4 1174 513 0 0 0 chr4 77320054 77320111 -78310009 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1174 289 340 149 0 chr4 77320766 77320981 -78309139 - L3 LINE CR1 -235 4254 4008 4 1174 252 371 73 0 chr4 77322789 77322913 -78307207 - RSINE1 SINE B4 -25 140 8 4 1174 283 317 19 76 chr4 77322940 77323097 -78307023 - B1F1 SINE Alu -1 148 1 4 1174 5885 45 10 3 chr4 77323130 77323851 -78306269 + L1Md_F2 LINE L1 5668 6393 -189 4 1174 389 215 7 0 chr4 77323858 77324007 -78306113 + CT-rich Low_complexity Low_complexity 1 150 0 4 1174 528 16 0 0 chr4 77324023 77324084 -78306036 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1174 1747 141 61 70 chr4 77324084 77324411 -78305709 + ORR1A4 LTR MaLR 6 329 0 4 1174 848 211 11 6 chr4 77324672 77324848 -78305272 - URR1A DNA MER1_type 0 226 50 4 1174 231 356 98 18 chr4 77324868 77325031 -78305089 + MLT1A0 LTR MaLR 11 186 -179 4 1174 405 303 51 92 chr4 77325940 77326136 -78303984 - B3A SINE B2 -7 188 1 4 1174 3662 74 8 0 chr4 77326356 77326827 -78303293 + MT2C_Mm LTR ERVL 1 475 0 4 1174 2671 66 3 3 chr4 77327450 77327798 -78302322 + L1_Mus2 LINE L1 6219 6566 0 4 1174 243 257 68 0 chr4 77328399 77328473 -78301647 + Lx6 LINE L1 7066 7144 -316 4 1174 21 36 0 0 chr4 77328512 77328540 -78301580 + AT_rich Low_complexity Low_complexity 1 28 0 4 1174 443 304 76 27 chr4 77328561 77328752 -78301368 - B3 SINE B2 0 195 2 4 1174 22 0 0 0 chr4 77328769 77328791 -78301329 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 4144 83 42 3 chr4 77328791 77329370 -78300750 - L1Md_F2 LINE L1 -14 6568 5968 4 1174 542 216 14 7 chr4 77329375 77329515 -78300605 + Lx6 LINE L1 7319 7459 -1 4 1174 1330 310 116 38 chr4 77330199 77330934 -78299186 - Lx5 LINE L1 -26 7434 6495 4 1174 24 32 0 0 chr4 77331965 77331996 -78298124 + AT_rich Low_complexity Low_complexity 1 31 0 4 1174 214 221 40 40 chr4 77332096 77332247 -78297873 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 4 1174 268 200 9 54 chr4 77332118 77332229 -78297891 + (TTTA)n Simple_repeat Simple_repeat 2 107 0 4 1175 3067 253 102 26 chr4 77332495 77334164 -78295956 + Lx9 LINE L1 624 2432 -3415 4 1175 1568 244 48 19 chr4 77334165 77334578 -78295542 + ORR1D1-int LTR MaLR 943 1367 -3 4 1175 950 275 68 44 chr4 77334581 77334946 -78295174 + ORR1D1 LTR MaLR 1 374 0 4 1175 2927 232 52 34 chr4 77334946 77335327 -78294793 + Lx9 LINE L1 4898 5292 -555 4 1175 329 43 21 0 chr4 77335327 77335374 -78294746 + (CAA)n Simple_repeat Simple_repeat 1 48 0 4 1175 2927 232 52 34 chr4 77335374 77335619 -78294501 + Lx9 LINE L1 5293 5543 -304 4 1175 468 0 0 0 chr4 77335619 77335671 -78294449 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 4 1175 2927 256 139 44 chr4 77335671 77336831 -78293289 + Lx9 LINE L1 5544 6878 -766 4 1175 1961 189 34 41 chr4 77336827 77337245 -78292875 - Lx2B LINE L1 -3 6997 6583 4 1175 1625 159 24 0 chr4 77337230 77337520 -78292600 + Lx2B LINE L1 5980 6276 -724 4 1175 1933 244 69 45 chr4 77337525 77338208 -78291912 + Lx9 LINE L1 6868 7566 -78 4 1175 329 288 40 33 chr4 77338376 77338527 -78291593 + L1MB7 LINE L1 5992 6143 -41 4 1175 450 338 64 7 chr4 77338668 77338808 -78291312 + B1F SINE Alu 1 148 -1 4 1175 355 333 38 38 chr4 77339572 77339731 -78290389 + Lx7 LINE L1 7025 7183 -513 4 1175 245 71 0 0 chr4 77339732 77339774 -78290346 + L1_Mus4 LINE L1 6593 6634 -2 4 1175 374 307 42 21 chr4 77339793 77339936 -78290184 + Lx7 LINE L1 7175 7320 -376 4 1175 559 177 306 18 chr4 77339997 77340216 -78289904 + MYSERV6-int LTR ERVK 6431 6712 -2247 4 1175 462 206 0 0 chr4 77340219 77340311 -78289809 + RLTR18-int LTR ERVK 4720 4811 -550 4 1175 21 36 0 0 chr4 77341128 77341156 -78288964 + AT_rich Low_complexity Low_complexity 1 28 0 4 1175 205 178 44 0 chr4 77341323 77341368 -78288752 + (TTAA)n Simple_repeat Simple_repeat 1 47 0 4 1175 432 333 29 0 chr4 77341387 77341525 -78288595 - RSINE1 SINE B4 -15 150 9 4 1175 23 33 0 0 chr4 77341902 77341932 -78288188 + AT_rich Low_complexity Low_complexity 1 30 0 4 1175 291 250 0 0 chr4 77341985 77342069 -78288051 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 4 1175 428 172 0 23 chr4 77342077 77342250 -78287870 + (TA)n Simple_repeat Simple_repeat 1 169 0 4 1175 272 282 47 0 chr4 77343370 77343455 -78286665 - L4 LINE RTE -1736 293 205 4 1175 190 148 18 18 chr4 77344698 77344753 -78285367 + A-rich Low_complexity Low_complexity 3 57 0 4 1175 303 263 58 25 chr4 77344757 77344878 -78285242 - L1MEe LINE L1 -4042 812 688 4 1175 5265 106 70 2 chr4 77346116 77346931 -78283189 + Lx3_Mus LINE L1 6132 7001 -8 4 1175 28 48 0 0 chr4 77347906 77347948 -78282172 + AT_rich Low_complexity Low_complexity 1 42 0 4 1175 186 281 35 0 chr4 77348390 77348447 -78281673 - L4 LINE RTE -1563 466 408 4 1175 416 229 160 42 chr4 77348806 77349043 -78281077 - L1MA8 LINE L1 -116 6175 5911 4 1175 22 35 0 0 chr4 77349049 77349078 -78281042 + AT_rich Low_complexity Low_complexity 1 29 0 4 1175 546 16 0 0 chr4 77349135 77349198 -78280922 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1175 660 292 20 9 chr4 77349198 77349480 -78280640 + L1MA8 LINE L1 5608 5896 -416 4 1175 238 26 51 0 chr4 77349889 77349928 -78280192 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1175 185 65 32 0 chr4 77350571 77350602 -78279518 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 1175 360 0 0 0 chr4 77351067 77351107 -78279013 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1175 314 185 0 18 chr4 77351729 77351784 -78278336 + RMER1B Other Other 393 446 -620 4 1175 1083 184 48 0 chr4 77351760 77351785 -78278335 + L1_Mus3 LINE L1 5062 5096 -787 4 1175 3106 116 18 8 chr4 77351785 77352273 -78277847 - L1_Mus3 LINE L1 0 6638 6146 4 1175 1126 146 10 10 chr4 77352273 77352481 -78277639 + L1_Mur2 LINE L1 5092 5299 -578 4 1175 2948 72 0 3 chr4 77352486 77352875 -78277245 - MTA_Mm LTR MaLR -8 388 1 4 1175 7063 91 55 4 chr4 77352875 77353920 -78276200 - MTA_Mm-int LTR MaLR 0 1098 1 4 1175 2929 81 2 8 chr4 77353920 77354318 -78275802 - MTA_Mm LTR MaLR 0 396 1 4 1175 2358 149 106 7 chr4 77354318 77354744 -78275376 + L1_Mus3 LINE L1 5302 5769 -114 4 1175 555 119 0 0 chr4 77354743 77354827 -78275293 - L1Md_F2 LINE L1 -394 6188 6105 4 1175 2487 64 9 9 chr4 77354827 77355157 -78274963 + L1_Mus1 LINE L1 6238 6567 0 4 1175 2683 94 16 0 chr4 77355157 77355541 -78274579 + L1_Mus3 LINE L1 5763 6152 -486 4 1175 342 0 0 0 chr4 77355732 77355770 -78274350 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1175 225 0 0 0 chr4 77355770 77355794 -78274326 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1175 316 348 25 42 chr4 77355796 77355916 -78274204 - MTEa LTR MaLR -192 167 50 4 1175 884 334 92 39 chr4 77355941 77356572 -78273548 - MTEa-int LTR MaLR -32 1548 800 4 1175 717 334 49 116 chr4 77356792 77357076 -78273044 - MTEa-int LTR MaLR -1081 499 266 4 1175 575 352 92 0 chr4 77357076 77357423 -78272697 - MTE2a LTR MaLR 0 379 1 4 1175 717 334 49 116 chr4 77357423 77357673 -78272447 - MTEa-int LTR MaLR -1315 265 1 4 1175 783 323 74 37 chr4 77357677 77358027 -78272093 - MTEa LTR MaLR -8 371 9 4 1175 5291 13 0 0 chr4 77358089 77358685 -78271435 - L1Md_T LINE L1 0 6582 5987 4 1175 277 316 13 0 chr4 77359074 77359150 -78270970 - ORR1E LTR MaLR -282 77 1 4 1175 1558 177 6 127 chr4 77359622 77359984 -78270136 + ORR1A3 LTR MaLR 1 318 -8 4 1175 690 103 265 8 chr4 77360274 77360391 -78269729 + B1_Mus2 SINE Alu 1 147 0 4 1175 342 47 0 59 chr4 77360391 77360459 -78269661 + (CAAAA)n Simple_repeat Simple_repeat 1 64 0 4 1175 308 354 0 0 chr4 77361069 77361151 -78268969 + B3 SINE B2 95 176 -40 4 1175 567 278 60 49 chr4 77361217 77361402 -78268718 - B3 SINE B2 0 216 30 4 1175 186 354 133 0 chr4 77361532 77361645 -78268475 + MIRb SINE MIR 86 213 -55 4 1175 224 286 16 0 chr4 77361839 77361902 -78268218 + CT-rich Low_complexity Low_complexity 1 64 0 4 1175 248 242 0 15 chr4 77361903 77361970 -78268150 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 4 1175 191 156 0 43 chr4 77362035 77362082 -78268038 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 4 1175 185 226 0 19 chr4 77363312 77363366 -78266754 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1175 4092 159 17 53 chr4 77363406 77364240 -78265880 + RLTR22_Mur LTR ERVK 1 804 -1044 4 1175 1147 182 52 40 chr4 77364473 77364725 -78265395 + RLTR22_Mur LTR ERVK 1594 1848 0 4 1175 612 0 0 0 chr4 77364752 77364820 -78265300 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 4 1175 779 315 33 61 chr4 77364900 77364937 -78265183 + Lx9 LINE L1 6903 6939 -705 4 1175 958 134 89 0 chr4 77364937 77365116 -78265004 - B2_Mm2 SINE B2 0 195 1 4 1175 779 315 33 61 chr4 77365116 77365437 -78264683 + Lx9 LINE L1 6940 7251 -393 4 1175 1367 68 0 45 chr4 77365964 77366163 -78263957 - L1_Mus2 LINE L1 -4 6562 6373 4 1175 4230 78 0 0 chr4 77366209 77366762 -78263358 - L1Md_T LINE L1 0 6582 6030 4 1175 1115 84 0 7 chr4 77367091 77367246 -78262874 - L1_Mus1 LINE L1 -1 6566 6413 4 1175 723 144 1 0 chr4 77367246 77367369 -78262751 + L1_Mus1 LINE L1 6055 6184 -398 4 1175 193 389 120 20 chr4 77367665 77368014 -78262106 + L3 LINE CR1 3966 4349 -140 4 1175 242 326 31 9 chr4 77368045 77368155 -78261965 - MIRb SINE MIR -36 232 116 5 1175 468 308 81 39 chr4 77368371 77368705 -78261415 - LTR37A LTR ERV1 -5 421 74 5 1175 905 235 92 0 chr4 77368728 77368924 -78261196 + B3 SINE B2 1 214 -2 5 1175 318 50 0 0 chr4 77369003 77369043 -78261077 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 1175 650 269 31 36 chr4 77369111 77369165 -78260955 + ID_B1 SINE B4 32 222 -1 5 1175 1100 43 0 0 chr4 77369165 77369303 -78260817 + B1_Mm SINE Alu 10 147 0 5 1175 240 59 0 0 chr4 77369305 77369339 -78260781 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 5 1175 305 220 17 0 chr4 77369362 77369421 -78260699 - HAL1-3A_ME LINE L1 -824 2034 1975 5 1175 190 306 48 0 chr4 77369837 77369899 -78260221 - MIRc SINE MIR -121 147 83 5 1175 405 0 0 0 chr4 77370378 77370423 -78259697 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1175 228 233 0 0 chr4 77371218 77371278 -78258842 + T-rich Low_complexity Low_complexity 5 64 0 5 1175 4151 109 136 98 chr4 77371405 77371579 -78258541 + RMER17D LTR ERVK 1 179 -710 5 1175 1111 71 0 0 chr4 77371579 77371719 -78258401 + B1_Mm SINE Alu 1 140 -7 5 1175 4151 109 136 98 chr4 77371719 77372399 -78257721 + RMER17D LTR ERVK 180 887 -2 5 1175 256 324 50 90 chr4 77372433 77372633 -78257487 - Lx8 LINE L1 -273 7200 7009 5 1175 414 0 0 0 chr4 77372656 77372702 -78257418 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1175 26 50 0 0 chr4 77372831 77372871 -78257249 + AT_rich Low_complexity Low_complexity 1 40 0 5 1175 4954 234 17 14 chr4 77373300 77374400 -78255720 + Lx5 LINE L1 5820 6929 -121 5 1175 670 159 0 0 chr4 77374515 77374622 -78255498 + B1_Mus2 SINE Alu 41 147 0 5 1175 294 143 0 0 chr4 77374622 77374671 -78255449 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 5 1175 882 153 11 6 chr4 77374664 77374842 -78255278 + GA-rich Low_complexity Low_complexity 2 180 0 5 1175 521 30 0 15 chr4 77374850 77374918 -78255202 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 5 1175 1426 215 102 12 chr4 77374918 77375235 -78254885 + MTC LTR MaLR 74 421 0 5 1175 27 29 0 0 chr4 77375695 77375729 -78254391 + AT_rich Low_complexity Low_complexity 1 34 0 5 1175 892 281 94 26 chr4 77376318 77376669 -78253451 + ORR1C2 LTR MaLR 3 377 -7 5 1175 7853 65 0 0 chr4 77376901 77377903 -78252217 + L1Md_F2 LINE L1 4585 5586 -297 5 1175 7877 52 3 14 chr4 77377904 77378908 -78251212 + L1Md_F2 LINE L1 5588 6580 -2 5 1175 228 88 0 0 chr4 77380100 77380134 -78249986 + L1_Mus1 LINE L1 6312 6345 -222 5 1175 931 52 7 29 chr4 77380138 77380277 -78249843 + L1Md_F2 LINE L1 6444 6579 -3 5 1175 1460 234 70 0 chr4 77380656 77381044 -78249076 - MTD LTR MaLR 0 419 5 5 1175 343 52 17 17 chr4 77381374 77381433 -78248687 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1175 1421 120 13 4 chr4 77381650 77381876 -78248244 - Lx3_Mus LINE L1 0 7009 6782 5 1175 423 226 0 0 chr4 77381968 77382070 -78248050 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 5 1175 24 0 0 0 chr4 77382879 77382903 -78247217 + AT_rich Low_complexity Low_complexity 1 24 0 5 1175 443 272 77 6 chr4 77383169 77383339 -78246781 - L1MA4A LINE L1 -378 5925 5744 5 1175 463 248 63 8 chr4 77383343 77383469 -78246651 + ORR1D2 LTR MaLR 6 138 -232 5 1175 2848 154 6 12 chr4 77383548 77384029 -78246091 - Lx LINE L1 -1 6653 6176 5 1175 2676 137 73 31 chr4 77384029 77384574 -78245546 + RLTR1D LTR ERV1 9 617 -7 5 1175 482 106 0 0 chr4 77384581 77384647 -78245473 - Lx LINE L1 -468 6186 6121 5 1175 2694 154 60 0 chr4 77384643 77385144 -78244976 + Lx2 LINE L1 5887 6417 -580 5 1175 342 316 52 1 chr4 77385144 77385293 -78244827 + ORR1D2 LTR MaLR 210 374 0 5 1175 238 302 0 0 chr4 77385363 77385416 -78244704 + ID4_ SINE ID 12 64 -19 5 1175 376 309 56 11 chr4 77385711 77385891 -78244229 - Lx8 LINE L1 -10 7463 7276 5 1175 204 150 0 70 chr4 77386901 77386944 -78243176 + A-rich Low_complexity Low_complexity 5 44 0 5 1175 1789 161 9 58 chr4 77388379 77388723 -78241397 - ORR1A2 LTR MaLR 0 327 1 5 1175 753 96 0 56 chr4 77390024 77390168 -78239952 - L1Md_F2 LINE L1 -1 6581 6446 5 1175 30 107 0 0 chr4 77390442 77390563 -78239557 + AT_rich Low_complexity Low_complexity 1 121 0 5 1175 14071 141 3 30 chr4 77390691 77394127 -78235993 - L1_Mus1 LINE L1 -2 6565 3226 5 1175 21 36 0 0 chr4 77394183 77394211 -78235909 + AT_rich Low_complexity Low_complexity 1 28 0 5 1175 621 40 0 0 chr4 77394259 77394335 -78235785 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1175 1532 215 50 12 chr4 77395108 77395509 -78234611 - Lx4B LINE L1 -785 6273 5858 5 1175 2012 273 43 10 chr4 77395501 77396121 -78233999 + Lx4B LINE L1 6271 6926 -82 5 1175 23 0 0 0 chr4 77396145 77396168 -78233952 + AT_rich Low_complexity Low_complexity 1 23 0 5 1175 1732 233 42 5 chr4 77396837 77397243 -78232877 - MTC LTR MaLR 0 421 1 5 1175 446 233 28 11 chr4 77397319 77397462 -78232658 - Lx3A LINE L1 0 6976 6843 5 1175 2634 165 48 0 chr4 77397483 77397943 -78232177 + Lx2B LINE L1 6495 6976 -24 5 1175 3189 19 0 0 chr4 77397944 77398313 -78231807 + L1Md_T LINE L1 5218 5586 -297 5 1175 8038 53 0 0 chr4 77398313 77399307 -78230813 + L1Md_T LINE L1 5587 6580 -2 5 1175 22 56 0 0 chr4 77399307 77399343 -78230777 + AT_rich Low_complexity Low_complexity 1 36 0 5 1175 186 347 73 20 chr4 77399441 77399591 -78230529 + MER5B DNA MER1_type 2 159 -19 5 1175 496 143 20 0 chr4 77399769 77399867 -78230253 + CT-rich Low_complexity Low_complexity 2 101 0 5 1175 510 17 0 0 chr4 77399868 77399927 -78230193 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1175 570 88 0 21 chr4 77399959 77400052 -78230068 + L1Md_F2 LINE L1 6483 6573 -9 5 1175 23 0 0 0 chr4 77400147 77400170 -78229950 + AT_rich Low_complexity Low_complexity 1 23 0 5 1175 443 331 28 41 chr4 77400209 77400354 -78229766 + RSINE1 SINE B4 23 165 0 5 1175 817 221 47 5 chr4 77401066 77401257 -78228863 - Lx4A LINE L1 -1001 6057 5859 5 1175 3676 185 185 15 chr4 77401256 77402082 -78228038 + Lx4A LINE L1 6090 7056 -2 5 1175 266 275 36 9 chr4 77402150 77402260 -78227860 - L1MC LINE L1 -2275 3871 3759 5 1175 242 248 30 0 chr4 77402394 77402495 -78227625 + (TA)n Simple_repeat Simple_repeat 1 104 0 5 1175 266 50 25 0 chr4 77402506 77402546 -78227574 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1175 206 217 0 0 chr4 77404640 77404686 -78225434 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1175 504 0 0 0 chr4 77404686 77404742 -78225378 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1175 543 238 42 129 chr4 77405725 77405751 -78224369 - B4 SINE B4 -44 248 214 5 1175 1062 50 0 21 chr4 77405751 77405765 -78224355 - B1_Mm SINE Alu -1 146 135 5 1175 441 0 0 0 chr4 77405765 77405814 -78224306 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 5 1175 1062 50 0 21 chr4 77405814 77405943 -78224177 - B1_Mm SINE Alu -13 134 6 5 1175 543 238 42 129 chr4 77405943 77405966 -78224154 - B4 SINE B4 -79 213 73 5 1175 21 95 0 0 chr4 77406586 77406649 -78223471 + AT_rich Low_complexity Low_complexity 1 63 0 5 1175 324 219 16 0 chr4 77407185 77407249 -78222871 - B1F1 SINE Alu -16 133 69 5 1175 273 297 0 26 chr4 77407249 77407261 -78222859 - ID_B1 SINE B4 -16 208 135 5 1175 29 28 0 0 chr4 77408045 77408081 -78222039 + AT_rich Low_complexity Low_complexity 1 36 0 5 1175 537 269 21 7 chr4 77408956 77409098 -78221022 + B1_Mur4 SINE Alu 1 144 -6 5 1175 475 318 206 16 chr4 77409222 77409466 -78220654 + Lx8 LINE L1 6562 6851 -622 5 1175 618 60 30 0 chr4 77409466 77409566 -78220554 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 5 1175 631 309 215 28 chr4 77409566 77409933 -78220187 + Lx8 LINE L1 6852 7288 -185 5 1175 686 167 11 90 chr4 77409917 77410095 -78220025 + Lx3C LINE L1 6800 6963 -13 5 1175 579 128 21 0 chr4 77410103 77410244 -78219876 + (GA)n Simple_repeat Simple_repeat 1 144 0 5 1175 23 54 0 0 chr4 77410360 77410397 -78219723 + AT_rich Low_complexity Low_complexity 1 37 0 5 1175 766 258 70 73 chr4 77411678 77412021 -78218099 - Lx7 LINE L1 0 7696 7355 5 1175 896 246 72 4 chr4 77412022 77412271 -78217849 + Lx7 LINE L1 5554 5819 -61 5 1175 4453 260 58 25 chr4 77412263 77413633 -78216487 + Lx7 LINE L1 5991 7405 -291 5 1175 387 0 0 0 chr4 77413640 77413683 -78216437 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 5 1175 581 61 12 0 chr4 77414579 77414661 -78215459 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1175 191 88 29 0 chr4 77414665 77414699 -78215421 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1175 1508 248 13 39 chr4 77415755 77416141 -78213979 + ORR1C2 LTR MaLR 1 376 -8 5 1175 587 332 57 43 chr4 77416300 77416511 -78213609 - B3 SINE B2 -2 214 1 5 1175 297 278 44 67 chr4 77417518 77417653 -78212467 - MIR SINE MIR -19 243 112 5 1175 3549 98 15 19 chr4 77418034 77418556 -78211564 + L1Md_F2 LINE L1 6058 6577 -5 5 1175 21 0 0 0 chr4 77418559 77418580 -78211540 + AT_rich Low_complexity Low_complexity 1 21 0 5 1175 3523 104 21 4 chr4 77418602 77419123 -78210997 - L1_Mus2 LINE L1 -1 6565 6036 5 1175 2532 82 82 5 chr4 77420667 77421047 -78209073 + L1_Mus3 LINE L1 6230 6638 0 5 1175 496 125 0 30 chr4 77421051 77421150 -78208970 + Lx6 LINE L1 7361 7456 -4 5 1175 1363 190 35 115 chr4 77421906 77422385 -78207735 - ORR1B1 LTR MaLR 0 394 15 5 1175 1097 99 0 7 chr4 77422385 77422537 -78207583 - Lx2A1 LINE L1 -462 6546 6396 5 1175 2521 168 2 16 chr4 77422539 77422976 -78207144 + Lx2A1 LINE L1 6578 7008 0 5 1175 2507 179 25 8 chr4 77422982 77423661 -78206459 - ORR1B1-int LTR MaLR -191 1772 665 5 1175 614 317 63 22 chr4 77425126 77425394 -78204726 + MTEa LTR MaLR 101 379 0 5 1175 1787 162 14 0 chr4 77426569 77426859 -78203261 + Lx4A LINE L1 6118 6411 -647 5 1175 704 180 64 7 chr4 77427443 77427583 -78202537 - URR1A DNA MER1_type 0 226 79 5 1175 226 196 20 0 chr4 77428052 77428103 -78202017 + URR1B DNA MER1_type 115 166 -59 5 1175 25 0 0 0 chr4 77428776 77428801 -78201319 + AT_rich Low_complexity Low_complexity 1 25 0 5 1175 3046 79 5 0 chr4 77429211 77429605 -78200515 - MTA_Mm LTR MaLR 0 396 1 6 1175 24 53 0 0 chr4 77430015 77430053 -78200067 + AT_rich Low_complexity Low_complexity 1 38 0 6 1175 399 143 36 0 chr4 77430425 77430509 -78199611 + Lx LINE L1 6568 6654 0 6 1175 244 64 0 41 chr4 77430511 77430560 -78199560 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1175 3258 121 36 0 chr4 77430645 77431142 -78198978 + Lx LINE L1 5705 6219 -435 6 1175 4609 67 5 13 chr4 77431137 77431743 -78198377 - L1_Mus1 LINE L1 -105 5778 5178 6 1175 6284 73 2 1 chr4 77431743 77432564 -78197556 + L1_Mus1 LINE L1 5746 6567 0 6 1175 2310 140 32 56 chr4 77432575 77433037 -78197083 + Lx LINE L1 6203 6653 -1 6 1175 712 269 13 9 chr4 77433077 77433317 -78196803 - Lx9 LINE L1 -1128 6516 6221 6 1175 423 0 0 0 chr4 77433342 77433389 -78196731 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1175 209 229 33 0 chr4 77433415 77433476 -78196644 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 6 1175 877 349 89 36 chr4 77433578 77434249 -78195871 + Lx9 LINE L1 6655 7361 -283 6 1175 279 79 0 0 chr4 77434353 77434391 -78195729 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1175 189 0 0 0 chr4 77434404 77434425 -78195695 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1175 456 300 25 0 chr4 77435436 77435556 -78194564 + B1F SINE Alu 7 129 -20 6 1175 470 264 13 46 chr4 77436310 77436461 -78193659 + B1_Mur3 SINE Alu 1 146 -3 6 1175 193 53 51 26 chr4 77436463 77436502 -78193618 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1175 219 216 27 13 chr4 77436971 77437046 -78193074 + A-rich Low_complexity Low_complexity 4 79 0 6 1175 4306 73 3 15 chr4 77437409 77438005 -78192115 - L1Md_F2 LINE L1 -3 6579 5991 6 1175 2450 46 3 0 chr4 77438005 77438308 -78191812 + L1Md_F2 LINE L1 5706 6009 -573 6 1175 243 133 0 0 chr4 77438843 77438888 -78191232 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1175 186 43 0 0 chr4 77439068 77439091 -78191029 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1175 1444 59 0 42 chr4 77440604 77440816 -78189304 + L1Md_F2 LINE L1 6380 6582 0 6 1175 3780 156 26 3 chr4 77440908 77441565 -78188555 + RLTR33 LTR ERVK 2 673 -5 6 1175 352 271 47 54 chr4 77441691 77441839 -78188281 + B1_Mus1 SINE Alu 1 147 -1 6 1175 638 301 61 10 chr4 77442798 77442996 -78187124 + B3 SINE B2 9 216 0 6 1175 5293 112 11 1 chr4 77443067 77443851 -78186269 - L1_Mus3 LINE L1 -6 6632 5841 6 1175 394 336 0 16 chr4 77444067 77444191 -78185929 + MLT1A LTR MaLR 246 367 -7 6 1175 28 0 0 0 chr4 77446271 77446299 -78183821 + AT_rich Low_complexity Low_complexity 1 28 0 6 1175 521 268 46 23 chr4 77447514 77447644 -78182476 - ETnERV2-int LTR ERVK -204 7202 7070 6 1175 516 330 5 30 chr4 77448238 77448435 -78181685 - B3A SINE B2 -6 192 1 6 1175 25 31 0 0 chr4 77448599 77448631 -78181489 + AT_rich Low_complexity Low_complexity 1 32 0 6 1175 573 55 0 0 chr4 77449121 77449194 -78180926 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 6 1175 191 146 0 24 chr4 77451137 77451179 -78178941 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 1175 909 182 26 11 chr4 77451253 77451442 -78178678 - B2_Mm2 SINE B2 -3 192 1 6 1175 441 66 0 0 chr4 77451676 77451737 -78178383 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1175 4600 138 40 14 chr4 77452259 77453049 -78177071 + Lx3A LINE L1 6094 6974 -7 6 1175 208 125 50 0 chr4 77453147 77453187 -78176933 + T-rich Low_complexity Low_complexity 6 47 0 6 1175 2190 191 26 11 chr4 77453659 77454113 -78176007 - RMER6B LTR ERVK 0 461 1 6 1175 23 54 0 0 chr4 77454888 77454925 -78175195 + AT_rich Low_complexity Low_complexity 1 37 0 6 1175 390 101 0 0 chr4 77455140 77455209 -78174911 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1175 332 273 22 43 chr4 77456596 77456688 -78173432 - B1_Mur2 SINE Alu 0 149 60 6 1175 784 338 22 29 chr4 77456806 77457220 -78172900 + Lx9 LINE L1 7053 7463 -181 6 1175 455 0 18 0 chr4 77457221 77457276 -78172844 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1175 951 114 18 3 chr4 77460828 77461158 -78168962 + (TA)n Simple_repeat Simple_repeat 1 335 0 6 1175 613 264 39 48 chr4 77461914 77462121 -78167999 - B3 SINE B2 -11 205 1 6 1175 2659 72 3 0 chr4 77462848 77463209 -78166911 - L1Md_F2 LINE L1 -3 6579 6218 6 1175 183 42 0 0 chr4 77463223 77463247 -78166873 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1176 1083 95 0 0 chr4 77464674 77464821 -78165299 - B1_Mm SINE Alu 0 147 1 6 1176 233 218 19 47 chr4 77465669 77465775 -78164345 + A-rich Low_complexity Low_complexity 4 106 0 6 1176 305 331 49 86 chr4 77466055 77466217 -78163903 + B4 SINE B4 17 172 -120 6 1176 219 359 11 21 chr4 77466151 77466245 -78163875 + PB1D7 SINE Alu 21 113 -7 6 1176 724 336 54 17 chr4 77468005 77468359 -78161761 + ORR1D2 LTR MaLR 4 370 0 6 1176 412 280 58 28 chr4 77468614 77468755 -78161365 - B3 SINE B2 -4 212 73 6 1176 189 0 0 0 chr4 77469271 77469292 -78160828 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1176 522 0 0 0 chr4 77469292 77469349 -78160771 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1176 306 0 0 0 chr4 77469471 77469505 -78160615 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1176 225 200 0 0 chr4 77470649 77470694 -78159426 + T-rich Low_complexity Low_complexity 1 45 0 6 1176 552 68 0 0 chr4 77471516 77471589 -78158531 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 6 1176 368 20 20 0 chr4 77471924 77471973 -78158147 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 1176 22 0 0 0 chr4 77472727 77472749 -78157371 + AT_rich Low_complexity Low_complexity 1 22 0 6 1176 238 392 0 10 chr4 77473060 77473158 -78156962 + PB1D10 SINE Alu 2 98 -19 6 1176 33 80 0 0 chr4 77473619 77473694 -78156426 + AT_rich Low_complexity Low_complexity 1 75 0 6 1176 25 0 0 0 chr4 77474585 77474610 -78155510 + AT_rich Low_complexity Low_complexity 1 25 0 6 1176 3854 114 12 12 chr4 77475605 77476189 -78153931 + MT2B2 LTR ERVL 1 584 0 6 1176 371 259 27 27 chr4 77476198 77476309 -78153811 + L1MC1 LINE L1 6186 6296 -37 6 1176 28 48 0 0 chr4 77476360 77476402 -78153718 + AT_rich Low_complexity Low_complexity 1 42 0 6 1176 2626 182 44 39 chr4 77476501 77477043 -78153077 + RLTR31_Mm LTR ERVK 16 560 -1 6 1176 180 0 0 0 chr4 77477075 77477095 -78153025 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1176 681 335 68 31 chr4 77477125 77477474 -78152646 - Lx7 LINE L1 -398 7298 6940 6 1176 857 254 91 119 chr4 77477474 77477859 -78152261 + ORR1D1 LTR MaLR 1 374 0 6 1176 681 335 68 31 chr4 77477859 77477891 -78152229 - Lx7 LINE L1 -757 6939 6903 6 1176 540 127 0 0 chr4 77478019 77478129 -78151991 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 1176 297 294 57 25 chr4 77478301 77478545 -78151575 - Lx7 LINE L1 0 7696 7445 6 1176 308 369 39 0 chr4 77478838 77478968 -78151152 + B1_Mur2 SINE Alu 3 137 -12 6 1176 213 108 0 0 chr4 77478998 77479035 -78151085 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 6 1176 773 285 43 10 chr4 77479630 77479839 -78150281 + B3 SINE B2 1 216 0 6 1176 2638 136 22 26 chr4 77480080 77480541 -78149579 - Lx2 LINE L1 0 6997 6539 6 1176 1390 140 5 0 chr4 77480541 77480762 -78149358 + Lx2 LINE L1 6359 6580 -417 6 1176 1353 301 55 14 chr4 77481102 77481614 -78148506 - Lx8 LINE L1 -5 7468 6936 6 1176 256 313 54 7 chr4 77481684 77481832 -78148288 - Lx8 LINE L1 -563 6910 6756 6 1176 272 291 25 12 chr4 77481946 77482026 -78148094 + Tigger5 DNA MER2_type 2302 2382 -24 6 1176 25 31 0 0 chr4 77484064 77484096 -78146024 + AT_rich Low_complexity Low_complexity 1 32 0 6 1176 30 59 0 0 chr4 77484130 77484181 -78145939 + AT_rich Low_complexity Low_complexity 1 51 0 6 1176 435 52 0 0 chr4 77484971 77485029 -78145091 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1176 385 299 51 0 chr4 77485652 77485769 -78144351 + Lx9 LINE L1 6588 6710 -934 6 1176 492 62 0 0 chr4 77485806 77485870 -78144250 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1176 504 48 0 0 chr4 77486632 77486695 -78143425 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1176 1176 61 0 0 chr4 77487853 77488000 -78142120 - B1_Mus2 SINE Alu 0 147 1 6 1176 428 363 0 0 chr4 77489903 77490038 -78140082 + Lx5 LINE L1 6229 6363 -687 6 1176 946 324 40 48 chr4 77490034 77490550 -78139570 + Lx5 LINE L1 6506 6990 -60 6 1176 441 0 0 0 chr4 77490553 77490602 -78139518 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1176 304 286 180 18 chr4 77490843 77491121 -78138999 + L1MA7 LINE L1 5910 6232 -59 6 1176 1786 241 9 24 chr4 77491535 77491959 -78138161 + MTC LTR MaLR 4 421 0 6 1176 273 200 37 37 chr4 77491978 77492087 -78138033 + A-rich Low_complexity Low_complexity 4 112 0 6 1176 333 118 0 0 chr4 77492165 77492216 -78137904 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1176 328 174 357 9 chr4 77492339 77492428 -78137692 + B2_Mm2 SINE B2 46 169 -26 6 1176 405 0 0 0 chr4 77492428 77492473 -78137647 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 6 1176 226 175 34 34 chr4 77492473 77492497 -78137623 + B2_Mm2 SINE B2 170 195 0 6 1176 326 262 0 12 chr4 77493115 77493200 -78136920 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 6 1176 503 378 67 11 chr4 77493222 77493492 -78136628 - B4A SINE B4 -6 286 2 6 1176 27 0 0 0 chr4 77493878 77493905 -78136215 + AT_rich Low_complexity Low_complexity 1 27 0 6 1176 1088 299 127 25 chr4 77494577 77495565 -78134555 + Lx8 LINE L1 6395 7643 -1 6 1176 656 274 61 6 chr4 77496412 77496577 -78133543 - MTC LTR MaLR -17 404 231 6 1176 272 245 40 60 chr4 77497312 77497412 -78132708 - MTD LTR MaLR -126 293 196 6 1176 352 100 226 20 chr4 77497462 77497564 -78132556 - Lx9 LINE L1 -77 7567 7445 6 1176 455 289 0 0 chr4 77497567 77497671 -78132449 - MTD LTR MaLR -240 179 76 6 1176 230 156 0 0 chr4 77499703 77499748 -78130372 + T-rich Low_complexity Low_complexity 1 45 0 6 1176 421 329 35 47 chr4 77500020 77500189 -78129931 + B4 SINE B4 4 170 -122 1 1176 219 315 11 53 chr4 77500345 77500439 -78129681 + PB1D10 SINE Alu 18 107 -10 2 1176 234 143 0 0 chr4 77500642 77500691 -78129429 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1176 399 294 71 13 chr4 77502395 77502550 -78127570 - MER58A DNA MER1_type -16 208 45 4 1176 7499 161 31 13 chr4 77502629 77504564 -78125556 + Lx3B LINE L1 4572 6569 -13 5 1176 859 99 0 0 chr4 77504580 77504711 -78125409 + L1_Mus1 LINE L1 6436 6566 -1 6 1176 279 191 0 0 chr4 77504843 77504890 -78125230 + PB1D9 SINE Alu 1 47 -73 7 1176 3335 63 5 16 chr4 77504897 77505334 -78124786 + L1Md_F2 LINE L1 5996 6427 -155 8 1176 226 59 0 56 chr4 77505326 77505380 -78124740 + L1Md_F2 LINE L1 6531 6581 -1 8 1176 26 74 0 0 chr4 77505905 77505959 -78124161 + AT_rich Low_complexity Low_complexity 1 54 0 9 1176 733 129 0 0 chr4 77506033 77506157 -78123963 - Lx LINE L1 0 6654 6531 1 1176 198 0 0 0 chr4 77506216 77506238 -78123882 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1176 301 286 82 15 chr4 77506839 77506974 -78123146 - L1M4 LINE L1 -377 5797 5654 1 1176 28 29 0 0 chr4 77507753 77507788 -78122332 + AT_rich Low_complexity Low_complexity 1 35 0 1 1176 426 213 42 21 chr4 77508295 77508391 -78121729 + MTC LTR MaLR 1 98 -323 1 1176 1257 268 24 86 chr4 77508410 77508908 -78121212 - Lx4B LINE L1 0 7058 6592 1 1176 1331 181 5 0 chr4 77508910 77509131 -78120989 + Lx5 LINE L1 6309 6530 -520 1 1176 23 0 0 0 chr4 77509670 77509693 -78120427 + AT_rich Low_complexity Low_complexity 1 23 0 1 1176 232 224 100 33 chr4 77510124 77510184 -78119936 + MER91B DNA Tip100 119 182 -8 1 1176 282 56 0 0 chr4 77510761 77510797 -78119323 + (TTG)n Simple_repeat Simple_repeat 3 38 0 1 1176 24 0 0 0 chr4 77511991 77512015 -78118105 + AT_rich Low_complexity Low_complexity 1 24 0 2 1176 190 363 84 56 chr4 77512318 77512496 -78117624 + MIR SINE MIR 48 230 -32 2 1176 308 326 0 22 chr4 77513084 77513219 -78116901 + (TATG)n Simple_repeat Simple_repeat 3 134 0 2 1176 339 239 0 0 chr4 77513220 77513308 -78116812 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 1176 488 185 9 0 chr4 77513479 77513587 -78116533 + (TA)n Simple_repeat Simple_repeat 2 110 0 2 1176 231 345 36 0 chr4 77514191 77514275 -78115845 - MIRm SINE MIR -16 260 174 2 1176 258 303 0 15 chr4 77514446 77514513 -78115607 - ID_B1 SINE B4 -8 216 151 2 1176 1058 110 0 0 chr4 77514513 77514659 -78115461 + B1_Mus2 SINE Alu 2 147 0 2 1176 645 105 0 0 chr4 77514660 77514755 -78115365 + (GA)n Simple_repeat Simple_repeat 2 96 0 2 1176 436 335 20 13 chr4 77514756 77514907 -78115213 - ID_B1 SINE B4 -63 161 10 2 1176 25 65 0 0 chr4 77515009 77515055 -78115065 + AT_rich Low_complexity Low_complexity 1 46 0 2 1176 566 261 60 0 chr4 77515104 77515238 -78114882 - B3A SINE B2 -55 143 2 3 1176 198 0 0 0 chr4 77516035 77516057 -78114063 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1176 316 159 34 11 chr4 77516182 77516271 -78113849 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 3 1176 302 356 161 18 chr4 77517208 77517431 -78112689 + B4A SINE B4 2 256 -36 3 1176 420 20 0 0 chr4 77517882 77517931 -78112189 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1176 546 16 0 0 chr4 77518391 77518454 -78111666 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1176 545 92 10 0 chr4 77518712 77518810 -78111310 + (TC)n Simple_repeat Simple_repeat 2 100 0 3 1176 197 253 43 65 chr4 77518810 77518903 -78111217 + L2 LINE L2 1546 1636 -1783 3 1176 253 47 47 0 chr4 77520121 77520164 -78109956 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1176 201 143 0 0 chr4 77520432 77520467 -78109653 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 3 1176 413 244 15 0 chr4 77520467 77520598 -78109522 - Lx9 LINE L1 0 7644 7512 4 1176 1073 235 65 53 chr4 77521069 77521410 -78108710 - RMER1C Other Other -5 1337 993 4 1176 1042 102 0 13 chr4 77521993 77522142 -78107978 + B1_Mus1 SINE Alu 2 148 0 4 1176 355 63 32 0 chr4 77522142 77522205 -78107915 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 4 1176 441 0 0 0 chr4 77522979 77523028 -78107092 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1176 22 0 0 0 chr4 77523058 77523080 -78107040 + AT_rich Low_complexity Low_complexity 1 22 0 4 1176 326 289 141 26 chr4 77523325 77523481 -78106639 + LTR73 LTR ERV1 125 298 -274 4 1176 378 0 0 0 chr4 77523491 77523533 -78106587 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1176 3188 214 109 71 chr4 77525077 77525350 -78104770 + RMER17B LTR ERVK 5 300 -658 4 1176 513 0 0 0 chr4 77525350 77525407 -78104713 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1176 2902 62 3 0 chr4 77525410 77525780 -78104340 - L1_Mus1 LINE L1 0 6567 6197 5 1176 3188 214 109 71 chr4 77525780 77525898 -78104222 + RMER17B LTR ERVK 301 428 -530 4 1176 270 73 0 0 chr4 77525898 77525939 -78104181 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1176 3188 214 109 71 chr4 77525939 77526461 -78103659 + RMER17B LTR ERVK 429 957 -1 4 1176 235 379 88 44 chr4 77526536 77526898 -78103222 + MLT1D LTR MaLR 122 499 -6 5 1176 315 0 0 0 chr4 77527240 77527275 -78102845 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1176 416 19 19 0 chr4 77527275 77527327 -78102793 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1176 618 284 29 17 chr4 77528715 77528887 -78101233 - B4 SINE B4 -16 276 103 5 1176 238 289 88 11 chr4 77529008 77529099 -78101021 + RLTR40 LTR ERVK 561 658 -159 5 1176 22 35 0 0 chr4 77529144 77529173 -78100947 + AT_rich Low_complexity Low_complexity 1 29 0 5 1176 405 134 124 74 chr4 77529211 77529332 -78100788 - L1Md_F2 LINE L1 -2 6580 6454 5 1176 295 364 106 58 chr4 77529788 77529965 -78100155 + MLT1E2 LTR MaLR 51 240 -387 5 1176 586 269 106 11 chr4 77529965 77530153 -78099967 + B3 SINE B2 5 210 -6 6 1176 295 364 106 58 chr4 77530153 77530249 -78099871 + MLT1E2 LTR MaLR 241 337 -290 5 1176 562 344 18 15 chr4 77530259 77530590 -78099530 - L1_Mur3 LINE L1 -1605 4275 3944 6 1176 216 0 0 0 chr4 77530603 77530627 -78099493 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1176 271 300 30 8 chr4 77530766 77530897 -78099223 - L1_Mur3 LINE L1 -2049 3831 3698 6 1176 23 54 0 0 chr4 77530906 77530943 -78099177 + AT_rich Low_complexity Low_complexity 1 37 0 6 1176 6380 138 23 12 chr4 77531001 77532125 -78097995 + Lx LINE L1 5519 6654 0 6 1176 4033 222 75 20 chr4 77532821 77534184 -78095936 + Lx7 LINE L1 4750 6189 -1507 6 1176 813 154 77 0 chr4 77534284 77534427 -78095693 - L1_Mur3 LINE L1 -173 5707 5554 6 1176 922 259 57 16 chr4 77534482 77534729 -78095391 + MTC LTR MaLR 159 415 -6 6 1176 25 0 0 0 chr4 77535422 77535447 -78094673 + AT_rich Low_complexity Low_complexity 1 25 0 6 1176 2471 103 82 5 chr4 77536081 77536472 -78093648 - Lx3A LINE L1 -48 6933 6513 6 1176 4168 109 47 2 chr4 77536470 77537106 -78093014 + L1_Mur1 LINE L1 5057 5721 -165 7 1176 45 19 0 0 chr4 77537288 77537340 -78092780 + AT_rich Low_complexity Low_complexity 1 52 0 7 1176 414 0 0 0 chr4 77537443 77537489 -78092631 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1176 2461 225 92 40 chr4 77538035 77539200 -78090920 + Lx5 LINE L1 5826 7050 0 7 1176 314 107 0 18 chr4 77539200 77539257 -78090863 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 7 1176 25 65 0 0 chr4 77539448 77539494 -78090626 + AT_rich Low_complexity Low_complexity 1 46 0 7 1176 996 116 12 6 chr4 77539622 77539795 -78090325 + (TCTCC)n Simple_repeat Simple_repeat 2 175 0 7 1176 5545 108 14 6 chr4 77539795 77540611 -78089509 - L1_Mus4 LINE L1 -20 6616 5795 7 1176 4897 53 14 0 chr4 77542253 77542880 -78087240 - L1Md_F3 LINE L1 -5 6579 5944 7 1176 280 169 225 0 chr4 77543039 77543110 -78087010 - B1_Mur3 SINE Alu -1 148 62 7 1176 239 0 32 0 chr4 77547283 77547314 -78082806 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1176 3908 195 52 14 chr4 77547922 77548765 -78081355 + Lx3C LINE L1 6101 6975 -1 8 1176 270 0 0 0 chr4 77548769 77548799 -78081321 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1176 720 59 0 0 chr4 77548800 77548902 -78081218 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 0 8 1176 252 0 0 0 chr4 77549106 77549134 -78080986 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1176 22 0 0 0 chr4 77550559 77550581 -78079539 + AT_rich Low_complexity Low_complexity 1 22 0 8 1176 474 33 0 0 chr4 77550730 77550790 -78079330 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1176 537 16 0 0 chr4 77551226 77551288 -78078832 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 8 1176 919 265 0 14 chr4 77551357 77551571 -78078549 - B3 SINE B2 0 216 6 8 1176 500 324 32 23 chr4 77552758 77552976 -78077144 + Lx8 LINE L1 7111 7330 -143 8 1176 736 79 18 0 chr4 77553437 77553551 -78076569 + L1Md_F2 LINE L1 6455 6570 -12 9 1176 1687 78 0 9 chr4 77553995 77554228 -78075892 - L1_Mus2 LINE L1 -469 6097 5867 9 1176 1995 81 0 39 chr4 77554238 77554520 -78075600 + L1_Mus1 LINE L1 6297 6567 0 9 1176 2470 190 70 68 chr4 77555203 77555892 -78074228 + RMER6C LTR ERVK 1 690 0 9 1176 479 138 34 25 chr4 77557186 77557305 -78072815 + (TATATG)n Simple_repeat Simple_repeat 5 124 0 9 1176 423 56 0 0 chr4 77558248 77558302 -78071818 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1176 333 0 0 0 chr4 77558302 77558338 -78071782 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1176 253 44 89 0 chr4 77558746 77558791 -78071329 + (TATAA)n Simple_repeat Simple_repeat 5 53 0 9 1176 288 274 0 45 chr4 77559492 77559580 -78070540 + MTD LTR MaLR 330 413 -6 9 1176 23 0 0 0 chr4 77559751 77559774 -78070346 + AT_rich Low_complexity Low_complexity 1 23 0 9 1176 223 73 45 79 chr4 77561802 77561891 -78068229 + T-rich Low_complexity Low_complexity 2 87 0 1 1176 5677 134 69 25 chr4 77562008 77563027 -78067093 + Lx3A LINE L1 5802 6864 -117 1 1176 372 43 0 0 chr4 77563058 77563104 -78067016 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1 1176 25 0 0 0 chr4 77563306 77563331 -78066789 + AT_rich Low_complexity Low_complexity 1 25 0 1 1176 318 240 56 28 chr4 77563464 77563571 -78066549 + L1MD LINE L1 3857 3966 -2180 1 1176 321 310 144 23 chr4 77563591 77564076 -78066044 + L1MC1 LINE L1 4035 4578 -1568 1 1176 1132 301 73 30 chr4 77564098 77564699 -78065421 + Lx7 LINE L1 6809 7445 -28 1 1176 464 274 147 39 chr4 77564936 77565298 -78064822 + L1MC1 LINE L1 5505 5897 -345 1 1176 216 272 19 37 chr4 77566095 77566202 -78063918 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 1 1176 1660 159 17 14 chr4 77566345 77566639 -78063481 + Lx3C LINE L1 6651 6945 -31 1 1176 396 0 0 0 chr4 77566659 77566703 -78063417 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1176 810 290 141 16 chr4 77566706 77567011 -78063109 + MTD LTR MaLR 63 405 -14 1 1176 23 54 0 0 chr4 77567054 77567091 -78063029 + AT_rich Low_complexity Low_complexity 1 37 0 1 1176 601 299 20 15 chr4 77567130 77567330 -78062790 - B3 SINE B2 -15 201 1 1 1176 486 0 0 0 chr4 77568594 77568648 -78061472 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1176 367 313 52 15 chr4 77568705 77568841 -78061279 + ID_B1 SINE B4 83 223 -1 1 1176 1909 221 56 8 chr4 77569087 77569483 -78060637 - MTC LTR MaLR -6 415 1 1 1176 270 0 0 0 chr4 77569539 77569569 -78060551 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1176 25 31 0 0 chr4 77569580 77569612 -78060508 + AT_rich Low_complexity Low_complexity 1 32 0 1 1176 217 290 37 153 chr4 77569981 77570197 -78059923 + B2_Mm2 SINE B2 3 193 -2 1 1176 258 308 12 31 chr4 77571403 77571517 -78058603 + MIRc SINE MIR 69 176 -32 1 1176 23 86 0 0 chr4 77571517 77571575 -78058545 + AT_rich Low_complexity Low_complexity 1 58 0 1 1176 198 0 0 0 chr4 77571747 77571769 -78058351 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1176 28 20 0 56 chr4 77571962 77572016 -78058104 + AT_rich Low_complexity Low_complexity 1 51 0 1 1176 22 35 0 0 chr4 77572273 77572302 -78057818 + AT_rich Low_complexity Low_complexity 1 29 0 1 1176 27 29 0 0 chr4 77573363 77573397 -78056723 + AT_rich Low_complexity Low_complexity 1 34 0 1 1176 385 309 55 18 chr4 77574226 77574391 -78055729 - Lx7 LINE L1 -1351 6345 6175 1 1176 272 288 0 0 chr4 77574391 77574457 -78055663 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1176 328 301 97 47 chr4 77574458 77574737 -78055383 - Lx7 LINE L1 -1511 6185 5893 1 1176 1164 266 56 0 chr4 77574756 77575060 -78055060 + Lx3C LINE L1 6653 6973 -3 1 1176 647 188 53 7 chr4 77575073 77575223 -78054897 - Lx7 LINE L1 -1787 5909 5753 1 1176 498 325 33 55 chr4 77575329 77575800 -78054320 - L1_Rod LINE L1 -898 5245 4825 1 1176 401 287 9 0 chr4 77576149 77576257 -78053863 + L1_Rod LINE L1 3909 4017 -1830 1 1176 14630 188 93 11 chr4 77576251 77577091 -78053029 + Lx LINE L1 2379 3471 -2406 1 1176 423 0 0 0 chr4 77577091 77577138 -78052982 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1176 14630 175 86 8 chr4 77577138 77580234 -78049886 + Lx LINE L1 3472 6654 0 1 1176 244 203 13 26 chr4 77580237 77580313 -78049807 + A-rich Low_complexity Low_complexity 2 76 0 1 1176 432 214 39 23 chr4 77580463 77580592 -78049528 + Lx9 LINE L1 5300 5430 -417 1 1176 283 351 58 51 chr4 77580598 77580736 -78049384 + ORR1D2 LTR MaLR 81 219 -151 1 1176 272 164 15 0 chr4 77580803 77580870 -78049250 + GA-rich Low_complexity Low_complexity 3 70 0 1 1176 322 206 36 1 chr4 77580870 77580974 -78049146 + L1_Mur3 LINE L1 5462 5565 -794 1 1176 514 284 7 7 chr4 77580969 77581118 -78049002 + Lx9 LINE L1 5561 5709 -138 1 1176 2207 320 102 19 chr4 77581182 77582540 -78047580 + Lx9 LINE L1 5757 7346 -298 1 1176 1154 83 6 0 chr4 77582587 77582755 -78047365 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 1 1176 37 53 0 13 chr4 77583128 77583140 -78046980 + AT_rich Low_complexity Low_complexity 1 12 0 1 1176 1650 139 25 0 chr4 77583140 77583421 -78046699 + Lx3_Mus LINE L1 6722 7009 0 1 1176 37 53 0 13 chr4 77583421 77583484 -78046636 + AT_rich Low_complexity Low_complexity 1 63 0 1 1176 249 194 16 31 chr4 77583494 77583558 -78046562 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 1 1176 571 382 16 20 chr4 77583900 77584146 -78045974 - B4A SINE B4 -42 250 6 1 1176 742 225 14 69 chr4 77584277 77584501 -78045619 + Lx9 LINE L1 5759 5969 -1675 1 1176 32 0 0 0 chr4 77584587 77584619 -78045501 + AT_rich Low_complexity Low_complexity 1 32 0 1 1176 1889 283 31 54 chr4 77584679 77585347 -78044773 + Lx9 LINE L1 6306 6958 -686 1 1176 585 0 0 0 chr4 77585361 77585426 -78044694 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 1 1176 4670 84 2 6 chr4 77585452 77586088 -78044032 - L1Md_F2 LINE L1 -12 6570 5938 1 1176 8959 65 1 0 chr4 77586088 77587292 -78042828 + L1Md_F2 LINE L1 4729 5934 -648 1 1176 1122 298 59 37 chr4 77587304 77587806 -78042314 + Lx9 LINE L1 6954 7468 -176 1 1176 459 0 0 0 chr4 77587806 77587857 -78042263 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1176 1122 298 59 37 chr4 77587857 77588030 -78042090 + Lx9 LINE L1 7469 7644 0 1 1176 307 378 7 20 chr4 77588619 77588770 -78041350 + RSINE1 SINE B4 4 152 -13 1 1176 30 69 0 0 chr4 77588825 77588883 -78041237 + AT_rich Low_complexity Low_complexity 1 58 0 1 1176 525 344 47 78 chr4 77589167 77589526 -78040594 + MLT1D LTR MaLR 9 356 -149 1 1176 198 0 0 0 chr4 77589654 77589676 -78040444 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1176 1645 327 102 30 chr4 77590381 77591483 -78038637 + Lx9 LINE L1 6414 7595 -49 1 1176 27 62 0 0 chr4 77591702 77591750 -78038370 + AT_rich Low_complexity Low_complexity 1 48 0 1 1176 4900 145 32 21 chr4 77593020 77593895 -78036225 - Lx LINE L1 -11 6643 5759 1 1176 192 77 0 0 chr4 77594413 77594439 -78035681 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1 1177 414 0 0 0 chr4 77595830 77595876 -78034244 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1177 1695 306 132 32 chr4 77596026 77596750 -78033370 + Lx6 LINE L1 6517 7327 -133 1 1177 638 25 0 12 chr4 77596750 77596831 -78033289 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1 1177 1695 306 132 32 chr4 77596831 77596940 -78033180 + Lx6 LINE L1 7328 7433 -27 1 1177 490 280 74 15 chr4 77596974 77597177 -78032943 + B3 SINE B2 2 216 0 1 1177 454 333 56 33 chr4 77598193 77598373 -78031747 - B3A SINE B2 -13 185 2 1 1177 687 291 143 16 chr4 77598373 77598762 -78031358 + Lx9 LINE L1 5513 5974 -1670 1 1177 306 0 0 0 chr4 77598955 77598989 -78031131 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1177 279 0 0 0 chr4 77598989 77599019 -78031101 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1177 1165 336 78 21 chr4 77599077 77599709 -78030411 + Lx9 LINE L1 6367 7034 -610 1 1177 2507 101 19 0 chr4 77599816 77600181 -78029939 + L1_Mus3 LINE L1 5870 6241 -397 1 1177 3594 272 69 23 chr4 77601146 77602162 -78027958 + Lx7 LINE L1 5207 6266 -1430 1 1177 225 0 0 0 chr4 77602162 77602187 -78027933 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1177 3594 304 62 49 chr4 77602187 77602596 -78027524 + Lx7 LINE L1 6267 6632 -1064 1 1177 2900 55 0 0 chr4 77602596 77602962 -78027158 - L1Md_F2 LINE L1 -12 6570 6205 1 1177 3594 304 62 49 chr4 77602962 77603610 -78026510 + Lx7 LINE L1 6633 7330 -366 1 1177 207 69 0 0 chr4 77603643 77603672 -78026448 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1177 282 342 141 5 chr4 77603805 77603990 -78026130 - Charlie1b DNA MER1_type -249 274 65 1 1177 21 0 0 0 chr4 77604341 77604362 -78025758 + AT_rich Low_complexity Low_complexity 1 21 0 1 1177 426 323 23 0 chr4 77605346 77605479 -78024641 - B1_Mur2 SINE Alu -10 139 4 1 1177 516 163 0 0 chr4 77605479 77605608 -78024512 + (TA)n Simple_repeat Simple_repeat 1 129 0 1 1177 209 154 39 0 chr4 77605621 77605673 -78024447 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1177 682 100 53 8 chr4 77605764 77605895 -78024225 + Lx LINE L1 6516 6652 -2 1 1177 198 230 92 26 chr4 77605905 77605981 -78024139 - MIR SINE MIR -174 88 8 1 1177 190 365 13 26 chr4 77606791 77606867 -78023253 + L2b LINE L2 3041 3115 -260 1 1177 297 128 0 0 chr4 77607502 77607549 -78022571 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 1 1177 1544 148 0 0 chr4 77610302 77610565 -78019555 - Lx3_Mus LINE L1 -1 7008 6746 1 1177 4134 103 66 2 chr4 77610565 77610737 -78019383 + Lx3_Mus LINE L1 5741 5913 -1096 1 1177 193 29 29 29 chr4 77610737 77610772 -78019348 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1177 4134 103 66 2 chr4 77610772 77611222 -78018898 + Lx3_Mus LINE L1 5914 6402 -607 1 1177 1226 237 184 78 chr4 77612031 77612585 -78017535 - RMER20B LTR ERVK -14 613 1 1 1177 2311 188 136 21 chr4 77613871 77614392 -78015728 + RLTR33 LTR ERVK 6 586 -92 1 1177 387 243 71 19 chr4 77614401 77614470 -78015650 + L1_Mur3 LINE L1 4271 4339 -1541 1 1177 7430 44 1 7 chr4 77614470 77615387 -78014733 + L1Md_F2 LINE L1 5671 6582 0 1 1177 387 243 71 19 chr4 77615387 77615472 -78014648 + L1_Mur3 LINE L1 4340 4432 -1448 1 1177 797 67 82 25 chr4 77615472 77615594 -78014526 + B1_Mm SINE Alu 19 147 0 1 1177 789 11 0 0 chr4 77615668 77615758 -78014362 + (GAA)n Simple_repeat Simple_repeat 1 90 0 1 1177 477 253 35 18 chr4 77615769 77615938 -78014182 + L1_Mur3 LINE L1 4453 4624 -1256 1 1177 186 103 0 0 chr4 77615938 77615967 -78014153 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1177 198 0 0 0 chr4 77615988 77616010 -78014110 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1177 405 271 177 7 chr4 77616068 77616209 -78013911 - MTD LTR MaLR -18 401 237 1 1177 432 0 0 0 chr4 77616325 77616373 -78013747 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1177 840 212 24 5 chr4 77616546 77616759 -78013361 - Lx2A1 LINE L1 -2 7006 6790 1 1177 27 49 0 0 chr4 77616765 77616806 -78013314 + AT_rich Low_complexity Low_complexity 1 41 0 1 1177 360 328 157 22 chr4 77616906 77617230 -78012890 - HAL1 LINE L1 -458 2049 1682 1 1177 477 235 97 105 chr4 77618114 77618361 -78011759 - RMER1B Other Other -20 1046 802 1 1177 408 322 44 44 chr4 77618808 77618990 -78011130 + MTD LTR MaLR 5 186 -233 1 1177 25 0 0 0 chr4 77619059 77619084 -78011036 + AT_rich Low_complexity Low_complexity 1 25 0 1 1177 37946 30 0 1 chr4 77619303 77625942 -78004178 - L1Md_T LINE L1 0 6585 1 1 1177 552 42 0 0 chr4 77626723 77626794 -78003326 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1177 708 68 0 0 chr4 77627387 77627490 -78002630 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 1 1177 1126 245 286 12 chr4 77629360 77629836 -78000284 + Lx7 LINE L1 6879 7485 -211 2 1177 225 65 0 0 chr4 77630099 77630130 -77999990 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1177 513 217 28 92 chr4 77630130 77630266 -77999854 + Lx7 LINE L1 7493 7617 -79 2 1177 4439 2 0 0 chr4 77630266 77630756 -77999364 + L1Md_A LINE L1 6093 6582 0 2 1177 513 217 28 92 chr4 77630756 77630837 -77999283 + Lx7 LINE L1 7618 7696 0 2 1177 487 355 30 0 chr4 77632777 77632957 -77997163 - B3A SINE B2 -21 195 2 2 1177 1758 232 82 5 chr4 77634570 77634999 -77995121 + MT2A LTR ERVL 2 463 -70 2 1177 21 57 0 0 chr4 77635346 77635381 -77994739 + AT_rich Low_complexity Low_complexity 1 35 0 2 1177 263 26 0 49 chr4 77636742 77636783 -77993337 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1177 1003 110 14 7 chr4 77636783 77636919 -77993201 - B1_Mm SINE Alu -9 138 1 2 1177 3059 203 48 4 chr4 77637483 77638195 -77991925 + Lx3C LINE L1 6227 6995 -5 2 1177 905 271 8 25 chr4 77640051 77640289 -77989831 - RMER15 LTR ERVL -341 234 1 2 1177 237 352 130 42 chr4 77640569 77640830 -77989290 + L2 LINE L2 2610 2893 -526 2 1177 218 191 0 0 chr4 77641057 77641104 -77989016 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1177 22 56 0 0 chr4 77641240 77641276 -77988844 + AT_rich Low_complexity Low_complexity 1 36 0 2 1177 38 39 0 0 chr4 77641416 77641468 -77988652 + AT_rich Low_complexity Low_complexity 1 52 0 2 1177 387 264 33 30 chr4 77641545 77641671 -77988449 + MTD LTR MaLR 3 129 -267 2 1177 883 264 153 39 chr4 77641674 77642163 -77987957 + Lx7 LINE L1 7152 7696 0 2 1177 997 269 102 0 chr4 77642166 77642471 -77987649 + MTD LTR MaLR 84 419 0 2 1177 5612 68 7 1 chr4 77643085 77643822 -77986298 + L1_Mus3 LINE L1 5884 6624 -14 2 1177 525 32 0 0 chr4 77643822 77643885 -77986235 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1177 3188 129 16 16 chr4 77645222 77645734 -77984386 - Lx3_Mus LINE L1 -8 7001 6490 2 1177 659 143 168 29 chr4 77645734 77645871 -77984249 + Lx3_Mus LINE L1 6337 6492 -517 2 1177 1196 315 74 37 chr4 77646093 77647172 -77982948 + Lx8 LINE L1 4814 5950 -1694 2 1177 559 350 88 29 chr4 77647196 77647445 -77982675 + Lx8 LINE L1 7104 7364 -109 2 1177 333 0 0 0 chr4 77647445 77647482 -77982638 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1177 559 350 88 29 chr4 77647482 77647573 -77982547 + Lx8 LINE L1 7365 7463 -10 2 1177 27 0 0 0 chr4 77648498 77648525 -77981595 + AT_rich Low_complexity Low_complexity 1 27 0 2 1177 1891 97 18 7 chr4 77648958 77649238 -77980882 - L1Md_F2 LINE L1 -3 6579 6297 2 1177 474 33 0 0 chr4 77649397 77649457 -77980663 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1177 507 344 38 0 chr4 77649619 77649805 -77980315 + MTEb LTR MaLR 148 340 -39 2 1177 29 78 0 0 chr4 77650291 77650355 -77979765 + AT_rich Low_complexity Low_complexity 1 64 0 2 1177 25 0 0 0 chr4 77651376 77651401 -77978719 + AT_rich Low_complexity Low_complexity 1 25 0 2 1177 31 26 0 0 chr4 77651518 77651556 -77978564 + AT_rich Low_complexity Low_complexity 1 38 0 2 1177 241 345 14 7 chr4 77651728 77651868 -77978252 + L1M1 LINE L1 5695 5835 -468 2 1177 1872 132 60 24 chr4 77652892 77653226 -77976894 + Lx2 LINE L1 6651 6996 -1 2 1177 241 330 63 58 chr4 77653605 77653811 -77976309 + L1MC1 LINE L1 5451 5657 -687 2 1177 588 29 0 0 chr4 77653824 77653894 -77976226 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1177 23 0 0 0 chr4 77653924 77653947 -77976173 + AT_rich Low_complexity Low_complexity 1 23 0 2 1177 349 311 158 47 chr4 77653948 77653985 -77976135 + L1MC1 LINE L1 5758 5787 -546 2 1177 201 74 0 0 chr4 77653985 77654012 -77976108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1177 349 311 158 47 chr4 77654012 77654355 -77975765 + L1MC1 LINE L1 5788 6180 -153 2 1177 307 291 133 63 chr4 77654458 77654616 -77975504 + HAL1-3A_ME LINE L1 2040 2208 -650 2 1177 468 123 0 0 chr4 77655084 77655157 -77974963 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1177 200 188 0 0 chr4 77655866 77655898 -77974222 + G-rich Low_complexity Low_complexity 3 34 0 2 1177 707 110 40 23 chr4 77655898 77656075 -77974045 + GA-rich Low_complexity Low_complexity 1 180 0 2 1177 408 251 51 81 chr4 77656242 77656515 -77973605 + Lx9 LINE L1 7364 7628 -16 2 1177 212 250 0 0 chr4 77656677 77656729 -77973391 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 2 1177 235 363 125 7 chr4 77659350 77659479 -77970641 + RSINE1 SINE B4 4 148 -17 2 1177 455 82 14 0 chr4 77659479 77659552 -77970568 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1177 267 305 15 22 chr4 77659676 77659810 -77970310 + CT-rich Low_complexity Low_complexity 4 136 0 2 1177 27 0 0 0 chr4 77659810 77659837 -77970283 + AT_rich Low_complexity Low_complexity 1 27 0 2 1177 22 35 0 0 chr4 77660067 77660096 -77970024 + AT_rich Low_complexity Low_complexity 1 29 0 2 1177 37950 13 1 7 chr4 77660098 77665494 -77964626 + L1Md_A LINE L1 225 5586 -297 2 1177 8736 19 0 0 chr4 77665494 77666490 -77963630 + L1Md_A LINE L1 5587 6582 0 2 1177 304 324 36 18 chr4 77667051 77667161 -77962959 + PB1D10 SINE Alu 6 117 0 2 1177 424 337 53 18 chr4 77667707 77667924 -77962196 + RMER13A LTR ERVK 546 732 -176 2 1177 734 86 62 0 chr4 77667924 77668052 -77962068 - L1Md_F2 LINE L1 0 6582 6447 2 1177 424 360 68 26 chr4 77668052 77668198 -77961922 + RMER13A LTR ERVK 665 821 -39 2 1177 1093 91 0 0 chr4 77668962 77669105 -77961015 - B1_Mm SINE Alu -4 143 1 2 1177 189 0 0 0 chr4 77669145 77669166 -77960954 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1177 531 211 123 24 chr4 77669188 77669358 -77960762 - Lx9 LINE L1 -57 7587 7401 2 1177 22 35 0 0 chr4 77670437 77670466 -77959654 + AT_rich Low_complexity Low_complexity 1 29 0 2 1177 542 143 9 0 chr4 77670596 77670701 -77959419 + (CA)n Simple_repeat Simple_repeat 2 107 0 2 1177 191 200 36 18 chr4 77670861 77670917 -77959203 + L2a LINE L2 3213 3269 -157 2 1177 250 337 77 29 chr4 77671837 77671941 -77958179 + B4A SINE B4 4 112 -180 2 1177 27 29 0 0 chr4 77672330 77672364 -77957756 + AT_rich Low_complexity Low_complexity 1 34 0 2 1177 246 105 0 0 chr4 77674954 77674992 -77955128 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1177 1788 336 57 127 chr4 77675957 77677430 -77952690 - MTE-int LTR MaLR -169 1411 42 2 1177 274 296 78 39 chr4 77677636 77677815 -77952305 - ORR1E LTR MaLR -168 191 6 2 1177 468 0 0 0 chr4 77677961 77678013 -77952107 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1177 1042 96 7 0 chr4 77678163 77678309 -77951811 + B1_Mus1 SINE Alu 2 148 0 2 1177 396 0 0 0 chr4 77678311 77678355 -77951765 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1177 26 64 0 0 chr4 77678855 77678902 -77951218 + AT_rich Low_complexity Low_complexity 1 47 0 2 1177 249 55 38 88 chr4 77679144 77679224 -77950896 + A-rich Low_complexity Low_complexity 3 78 0 2 1177 818 343 44 18 chr4 77679371 77679754 -77950366 + MT2A LTR ERVL 139 531 -2 2 1177 1191 105 6 0 chr4 77679831 77680002 -77950118 + L1_Mus2 LINE L1 6395 6566 0 2 1177 245 329 40 34 chr4 77680375 77680523 -77949597 - RMER5 LTR ERV1 0 534 386 2 1177 393 156 0 0 chr4 77680532 77680596 -77949524 + B1_Mus1 SINE Alu 6 69 -79 2 1177 382 311 126 28 chr4 77680610 77680688 -77949432 - RMER5 LTR ERV1 -124 410 328 2 1177 396 0 0 0 chr4 77680688 77680732 -77949388 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1177 382 311 126 28 chr4 77680732 77680938 -77949182 - RMER5 LTR ERV1 -207 327 100 2 1177 286 29 0 118 chr4 77681533 77681652 -77948468 + (CAAAC)n Simple_repeat Simple_repeat 5 109 0 2 1177 1201 261 63 5 chr4 77682322 77682700 -77947420 - RCHARR1 DNA MER1_type 0 974 575 2 1177 577 333 41 11 chr4 77682710 77682977 -77947143 + B4A SINE B4 1 275 -17 2 1177 396 139 0 0 chr4 77683052 77683131 -77946989 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1177 481 200 83 45 chr4 77683151 77683308 -77946812 - RCHARR1 DNA MER1_type -428 546 384 2 1177 585 315 71 54 chr4 77683300 77683595 -77946525 + MT2A LTR ERVL 85 384 -149 2 1177 243 292 15 0 chr4 77683645 77683710 -77946410 + MT2A LTR ERVL 344 409 -124 2 1177 259 289 69 14 chr4 77683830 77683974 -77946146 + Tigger7 DNA MER2_type 305 456 -2035 2 1177 979 108 6 28 chr4 77685212 77685393 -77944727 + Lx LINE L1 6478 6654 0 2 1177 1056 52 0 0 chr4 77685558 77685693 -77944427 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 2 1177 402 361 25 76 chr4 77685718 77685916 -77944204 + B3A SINE B2 9 196 -2 2 1177 21 0 0 0 chr4 77685927 77685948 -77944172 + AT_rich Low_complexity Low_complexity 1 21 0 2 1177 6196 99 100 2 chr4 77685949 77686932 -77943188 + Lx3_Mus LINE L1 5923 7001 -8 2 1177 218 32 32 0 chr4 77687325 77687356 -77942764 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1177 279 0 0 0 chr4 77687356 77687386 -77942734 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1177 634 80 18 0 chr4 77687834 77687946 -77942174 + L1Md_F2 LINE L1 6467 6580 -2 2 1177 1571 166 36 12 chr4 77688104 77688440 -77941680 + L1_Mur2 LINE L1 2811 3154 -2723 2 1177 470 113 28 0 chr4 77688541 77688612 -77941508 - B2_Mm2 SINE B2 -115 80 8 2 1177 3179 133 23 18 chr4 77688613 77689126 -77940994 + Lx3A LINE L1 6447 6962 -19 2 1177 1248 45 0 0 chr4 77689126 77689281 -77940839 + (GAA)n Simple_repeat Simple_repeat 3 157 0 2 1177 386 227 7 22 chr4 77689300 77689435 -77940685 + GA-rich Low_complexity Low_complexity 1 133 0 2 1177 361 226 224 5 chr4 77689438 77689634 -77940486 + L1MC4 LINE L1 1107 1345 -4870 2 1177 794 30 10 0 chr4 77689847 77689948 -77940172 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 1177 1059 174 78 30 chr4 77689952 77690258 -77939862 + L1_Mur2 LINE L1 3127 3418 -2728 2 1177 304 245 152 10 chr4 77690258 77690357 -77939763 - B1_Mur4 SINE Alu -3 147 35 2 1177 278 247 12 47 chr4 77690445 77690530 -77939590 + ID_B1 SINE B4 135 216 -8 2 1177 327 309 12 0 chr4 77690541 77690622 -77939498 + PB1D9 SINE Alu 2 83 -37 2 1177 225 0 0 0 chr4 77690647 77690672 -77939448 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1177 504 109 158 0 chr4 77690738 77690839 -77939281 - L1_Mus4 LINE L1 -6 6630 6514 2 1177 2132 76 41 0 chr4 77690835 77691126 -77938994 + L1_Mus4 LINE L1 6199 6501 -135 2 1177 416 297 130 0 chr4 77691466 77691651 -77938469 + B3 SINE B2 2 210 -6 2 1177 2638 198 34 22 chr4 77692040 77692635 -77937485 + Lx3C LINE L1 6371 6972 -4 2 1177 27 49 0 0 chr4 77692662 77692703 -77937417 + AT_rich Low_complexity Low_complexity 1 41 0 2 1177 25 0 0 0 chr4 77692822 77692847 -77937273 + AT_rich Low_complexity Low_complexity 1 25 0 2 1177 629 267 77 5 chr4 77692984 77693180 -77936940 - B3 SINE B2 -6 210 1 3 1177 1268 56 0 0 chr4 77693703 77693865 -77936255 - L1Md_T LINE L1 -1 6581 6420 3 1177 189 0 0 0 chr4 77694022 77694043 -77936077 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1177 551 51 0 12 chr4 77694705 77694785 -77935335 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 3 1177 300 153 13 18 chr4 77694907 77695004 -77935116 + Lx3A LINE L1 6900 7009 0 3 1177 1081 293 71 11 chr4 77695232 77695611 -77934509 + MTD LTR MaLR 4 405 -14 3 1177 216 167 35 53 chr4 77695931 77695988 -77934132 + (TATG)n Simple_repeat Simple_repeat 3 58 0 3 1177 21 36 0 0 chr4 77696155 77696183 -77933937 + AT_rich Low_complexity Low_complexity 1 28 0 3 1177 961 163 49 137 chr4 77698218 77698375 -77931745 - L1_Mur2 LINE L1 -1877 4000 3846 3 1177 1193 61 0 0 chr4 77698375 77698523 -77931597 - B1_Mus1 SINE Alu 0 148 1 3 1177 961 163 49 137 chr4 77698523 77698628 -77931492 - L1_Mur2 LINE L1 -2032 3845 3761 3 1177 448 244 29 36 chr4 77698626 77698766 -77931354 + Lx5 LINE L1 6909 7047 -3 3 1177 348 374 90 36 chr4 77699049 77699271 -77930849 + B4A SINE B4 39 272 -20 3 1177 543 31 0 0 chr4 77699510 77699575 -77930545 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1177 229 220 0 0 chr4 77699891 77699941 -77930179 + T-rich Low_complexity Low_complexity 1 50 0 3 1177 21 62 0 44 chr4 77702322 77702390 -77927730 + AT_rich Low_complexity Low_complexity 1 65 0 3 1177 615 318 14 36 chr4 77702500 77702719 -77927401 + B3 SINE B2 1 214 -2 3 1177 988 118 18 6 chr4 77703152 77703323 -77926797 + (TTTTC)n Simple_repeat Simple_repeat 3 175 0 3 1177 22 35 0 0 chr4 77703381 77703410 -77926710 + AT_rich Low_complexity Low_complexity 1 29 0 3 1177 324 0 0 0 chr4 77703410 77703446 -77926674 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3 1177 6756 142 7 8 chr4 77704366 77705606 -77924514 - L1_Mus2 LINE L1 -597 5969 4737 3 1177 189 107 0 0 chr4 77705609 77705637 -77924483 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1177 6047 105 16 47 chr4 77705637 77706605 -77923515 + L1_Mus3 LINE L1 5681 6618 -20 3 1177 207 88 0 0 chr4 77707767 77707801 -77922319 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1177 202 208 21 0 chr4 77708279 77708300 -77921820 + (TATATG)n Simple_repeat Simple_repeat 2 23 0 3 1177 222 37 0 0 chr4 77708300 77708327 -77921793 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1177 202 208 21 0 chr4 77708327 77708353 -77921767 + (TATATG)n Simple_repeat Simple_repeat 6 31 0 3 1177 571 191 29 0 chr4 77709095 77709200 -77920920 + MTC LTR MaLR 1 108 -313 3 1177 231 35 0 0 chr4 77709205 77709234 -77920886 - Lx4B LINE L1 -899 6159 6131 3 1177 657 228 12 18 chr4 77709208 77709373 -77920747 + Lx4B LINE L1 6714 6877 -181 3 1177 28 0 0 0 chr4 77709657 77709685 -77920435 + AT_rich Low_complexity Low_complexity 1 28 0 3 1177 2137 286 87 37 chr4 77710449 77711405 -77918715 - L1_Mur3 LINE L1 -23 5857 4854 3 1177 541 312 0 0 chr4 77711854 77711982 -77918138 + B1_Mur2 SINE Alu 1 128 -21 3 1177 288 0 0 0 chr4 77711990 77712022 -77918098 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1177 186 133 0 0 chr4 77712271 77712301 -77917819 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 3 1177 237 205 153 24 chr4 77712424 77712509 -77917611 + MTC LTR MaLR 267 362 -57 3 1177 363 89 0 0 chr4 77712641 77712697 -77917423 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1177 351 371 7 0 chr4 77712711 77712854 -77917266 + B1_Mur1 SINE Alu 1 144 -5 3 1177 1374 321 83 50 chr4 77712927 77713990 -77916130 + Lx8 LINE L1 6095 7213 -260 3 1177 198 0 0 0 chr4 77713990 77714012 -77916108 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1177 323 364 102 24 chr4 77714012 77714228 -77915892 + Lx8 LINE L1 7214 7467 -6 3 1177 483 18 0 0 chr4 77714673 77714729 -77915391 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1177 627 164 42 28 chr4 77714982 77715126 -77914994 + Lx4A LINE L1 6911 7056 -2 3 1177 28 0 0 0 chr4 77715127 77715155 -77914965 + AT_rich Low_complexity Low_complexity 1 28 0 3 1177 279 0 0 0 chr4 77715276 77715307 -77914813 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1177 1609 145 71 13 chr4 77715350 77715658 -77914462 - Lx LINE L1 -7 6647 6322 3 1177 21 36 0 0 chr4 77715756 77715784 -77914336 + AT_rich Low_complexity Low_complexity 1 28 0 3 1177 246 301 0 21 chr4 77717485 77717580 -77912540 + T-rich Low_complexity Low_complexity 2 94 0 3 1177 750 138 0 0 chr4 77717820 77717943 -77912177 + (GA)n Simple_repeat Simple_repeat 2 124 0 3 1177 2000 147 9 3 chr4 77718362 77718704 -77911416 + Lx2A1 LINE L1 6665 7008 0 3 1177 3731 75 2 2 chr4 77719456 77719953 -77910167 - L1_Mus2 LINE L1 -1 6565 6069 3 1177 1502 126 4 54 chr4 77721038 77721315 -77908805 + Lx3A LINE L1 6718 6980 -1 3 1177 2100 127 6 3 chr4 77721595 77721928 -77908192 + Lx2 LINE L1 6664 6997 0 3 1177 22 0 0 0 chr4 77721974 77721996 -77908124 + AT_rich Low_complexity Low_complexity 1 22 0 3 1177 265 306 126 27 chr4 77721997 77722219 -77907901 - Lx8 LINE L1 -8 7465 7222 3 1177 234 81 0 0 chr4 77722249 77722286 -77907834 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1177 778 276 55 0 chr4 77724052 77724233 -77905887 - B3 SINE B2 -6 210 20 3 1177 193 283 33 0 chr4 77724293 77724353 -77905767 - MIRc SINE MIR -112 156 95 3 1177 21 57 0 0 chr4 77724462 77724497 -77905623 + AT_rich Low_complexity Low_complexity 1 35 0 3 1177 30 45 0 0 chr4 77724814 77724858 -77905262 + AT_rich Low_complexity Low_complexity 1 44 0 3 147 4628 201 26 6 chr4 77725281 77726233 -77903887 + Lx2B LINE L1 6006 6976 -24 3 1178 4110 112 11 5 chr4 77726254 77727015 -77903105 - L1_Mus3 LINE L1 -671 5967 5199 3 1178 4299 118 23 5 chr4 77727014 77727671 -77902449 + L1_Mus3 LINE L1 5945 6613 -25 3 1178 257 0 30 0 chr4 77727839 77727872 -77902248 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1178 22 56 0 0 chr4 77728377 77728413 -77901707 + AT_rich Low_complexity Low_complexity 1 36 0 3 1178 28 86 0 0 chr4 77728526 77728596 -77901524 + AT_rich Low_complexity Low_complexity 1 70 0 3 1178 25 31 0 0 chr4 77729599 77729631 -77900489 + AT_rich Low_complexity Low_complexity 1 32 0 3 1178 215 292 71 30 chr4 77729971 77730070 -77900050 - B2_Mm2 SINE B2 -33 162 60 3 1178 1125 49 14 7 chr4 77730076 77730219 -77899901 + B1_Mm SINE Alu 3 146 -1 3 1178 254 25 0 91 chr4 77730219 77730263 -77899857 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1178 212 264 19 0 chr4 77730398 77730451 -77899669 + (CATA)n Simple_repeat Simple_repeat 3 56 0 3 1178 318 98 0 0 chr4 77730454 77730505 -77899615 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1178 200 292 152 38 chr4 77730746 77730956 -77899164 + L3 LINE CR1 1949 2182 -2307 3 1178 303 315 50 78 chr4 77730972 77731151 -77898969 - MER5B DNA MER1_type -1 177 4 3 1178 1519 233 43 26 chr4 77731949 77732364 -77897756 + Lx4B LINE L1 6635 7056 -2 3 1178 1960 148 41 3 chr4 77732403 77732743 -77897377 + Lx LINE L1 6302 6654 0 3 1178 342 0 0 0 chr4 77733004 77733042 -77897078 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1178 1139 68 0 7 chr4 77733044 77733192 -77896928 - B1_Mm SINE Alu 0 147 1 3 1178 198 91 0 0 chr4 77735686 77735719 -77894401 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 3 1178 432 0 0 0 chr4 77735978 77736026 -77894094 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1178 183 42 0 0 chr4 77738710 77738734 -77891386 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1178 437 120 0 12 chr4 77738734 77738818 -77891302 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1178 856 69 46 0 chr4 77739111 77739241 -77890879 - L1Md_T LINE L1 0 6582 6447 3 1178 595 343 104 12 chr4 77740082 77740746 -77889374 - L1M2 LINE L1 -890 5253 4529 3 1178 1331 108 233 44 chr4 77740825 77741180 -77888940 - Lx3A LINE L1 -2 6979 6558 3 1178 198 191 0 0 chr4 77741284 77741326 -77888794 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1178 434 88 0 14 chr4 77741369 77741438 -77888682 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1178 387 130 0 0 chr4 77741982 77742059 -77888061 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1178 36 23 0 0 chr4 77743122 77743165 -77886955 + AT_rich Low_complexity Low_complexity 1 43 0 3 1178 1666 119 42 0 chr4 77743983 77744243 -77885877 - Lx3_Mus LINE L1 -8 7001 6731 3 1178 753 323 30 17 chr4 77744486 77744889 -77885231 - L1_Mur3 LINE L1 -28 5852 5445 3 1178 26 50 0 0 chr4 77745100 77745140 -77884980 + AT_rich Low_complexity Low_complexity 1 40 0 3 1178 513 327 137 38 chr4 77746001 77746316 -77883804 + ORR1E LTR MaLR 10 355 -4 3 1178 25 51 0 0 chr4 77746986 77747025 -77883095 + AT_rich Low_complexity Low_complexity 1 39 0 3 1178 366 23 0 0 chr4 77747099 77747142 -77882978 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1178 423 0 0 0 chr4 77747505 77747552 -77882568 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1178 21 36 0 0 chr4 77747829 77747857 -77882263 + AT_rich Low_complexity Low_complexity 1 28 0 3 1178 206 280 28 83 chr4 77747912 77748021 -77882099 - MIR SINE MIR -106 156 54 3 1178 4972 63 52 6 chr4 77748131 77748804 -77881316 - L1Md_F2 LINE L1 -8 6574 5871 3 1178 270 122 0 0 chr4 77748804 77748845 -77881275 + L1Md_F2 LINE L1 5833 5873 -709 3 1178 603 293 33 6 chr4 77749219 77749401 -77880719 - MER3 DNA MER1_type -4 205 19 3 1178 198 0 0 0 chr4 77750954 77750976 -77879144 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1178 2274 199 12 24 chr4 77751428 77751933 -77878187 + L1_Mur2 LINE L1 4322 4820 -1057 3 1178 6818 205 102 7 chr4 77751931 77754400 -77875720 + Lx5 LINE L1 4050 6756 -294 3 1178 874 85 138 0 chr4 77754841 77754971 -77875149 + B1_Mus1 SINE Alu 1 148 0 3 1178 207 0 0 0 chr4 77754974 77754997 -77875123 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 1178 254 123 0 17 chr4 77754994 77755052 -77875068 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 4 1178 673 295 115 69 chr4 77755425 77755789 -77874331 - MTEb LTR MaLR -5 374 1 4 1178 43 35 0 0 chr4 77756371 77756428 -77873692 + AT_rich Low_complexity Low_complexity 1 57 0 4 1178 216 0 0 0 chr4 77757422 77757446 -77872674 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1178 317 248 37 65 chr4 77761499 77761607 -77868513 + LTR52 LTR ERVL 26 130 -291 4 1178 278 50 25 0 chr4 77761700 77761740 -77868380 + (TCC)n Simple_repeat Simple_repeat 3 43 0 4 1178 483 18 0 0 chr4 77761740 77761796 -77868324 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1178 250 108 46 56 chr4 77761950 77762058 -77868062 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 4 1178 271 236 54 43 chr4 77763223 77763316 -77866804 + LFSINE_Vert SINE SINE 167 260 -199 4 1178 23 0 0 0 chr4 77764407 77764430 -77865690 + AT_rich Low_complexity Low_complexity 1 23 0 4 1178 29 0 0 0 chr4 77764804 77764833 -77865287 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 26149 93 23 9 chr4 77765096 77769654 -77860466 - L1Md_F2 LINE L1 -4 6578 1955 4 1178 39598 22 3 6 chr4 77769643 77775844 -77854276 - L1Md_A LINE L1 0 6582 409 4 1178 5247 117 34 8 chr4 77775845 77777446 -77852674 - L1Md_F2 LINE L1 -3903 1980 331 4 1178 27 0 0 0 chr4 77778330 77778357 -77851763 + AT_rich Low_complexity Low_complexity 1 27 0 4 1178 344 302 62 16 chr4 77778439 77778567 -77851553 - RMER30 DNA MER1_type -43 159 26 4 1178 21 57 0 0 chr4 77779159 77779194 -77850926 + AT_rich Low_complexity Low_complexity 1 35 0 4 1178 2738 198 56 69 chr4 77779194 77779888 -77850232 - Lx2 LINE L1 -5 6995 6311 4 1178 5688 58 0 0 chr4 77779887 77780597 -77849523 + L1Md_F2 LINE L1 4877 5586 -297 4 1178 7826 60 5 0 chr4 77780597 77781588 -77848532 + L1Md_F2 LINE L1 5587 6582 0 4 1178 3982 179 14 21 chr4 77781601 77782795 -77847325 - Lx2 LINE L1 -688 6309 5111 4 1178 580 124 41 0 chr4 77782790 77782887 -77847233 + L1_Mur1 LINE L1 4035 4135 -1751 4 1178 3043 12 0 0 chr4 77782889 77783235 -77846885 + L1Md_A LINE L1 5241 5586 -297 4 1178 8831 13 0 0 chr4 77783235 77784231 -77845889 + L1Md_A LINE L1 5587 6582 0 4 1178 5892 123 22 17 chr4 77784231 77785244 -77844876 + L1_Mur1 LINE L1 4122 5139 -747 4 1178 323 341 118 34 chr4 77785255 77785492 -77844628 - MLT1C LTR MaLR -210 257 1 4 1178 321 261 50 18 chr4 77785495 77785614 -77844506 - Lx7 LINE L1 -241 7232 7103 4 1178 206 192 19 0 chr4 77787081 77787133 -77842987 + CT-rich Low_complexity Low_complexity 4 56 0 4 1178 372 284 116 12 chr4 77789308 77789472 -77840648 - Lx8 LINE L1 -9 7464 7284 4 1178 604 280 131 49 chr4 77789526 77789770 -77840350 - Lx8 LINE L1 -283 7190 6927 4 1178 1739 136 141 10 chr4 77790051 77790364 -77839756 + ORR1B1 LTR MaLR 41 394 0 4 1178 444 193 0 0 chr4 77790969 77791088 -77839032 + CT-rich Low_complexity Low_complexity 1 119 0 4 1178 817 171 21 0 chr4 77791239 77791379 -77838741 + B1_Mus1 SINE Alu 6 148 0 4 1178 760 338 40 23 chr4 77791663 77792014 -77838106 + MLT1A0 LTR MaLR 4 360 -5 4 1178 5257 40 0 2 chr4 77792274 77792906 -77837214 + L1Md_T LINE L1 5950 6580 -2 4 1178 1436 310 39 46 chr4 77793225 77793993 -77836127 - Lx7 LINE L1 -1331 6365 5603 4 1178 1743 314 62 40 chr4 77793991 77794824 -77835296 + Lx7 LINE L1 6383 7234 -462 4 1178 272 337 12 0 chr4 77797605 77797691 -77832429 + PB1D10 SINE Alu 7 93 -24 4 1178 212 182 22 22 chr4 77797731 77797821 -77832299 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 4 1178 611 57 0 11 chr4 77797830 77797919 -77832201 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 1178 282 29 0 0 chr4 77797992 77798027 -77832093 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 1178 21046 70 8 8 chr4 77798373 77801974 -77828146 - L1Md_F2 LINE L1 0 6582 2984 4 1178 236 275 14 14 chr4 77802195 77802265 -77827855 + L2a LINE L2 3354 3423 -3 4 1178 333 0 0 0 chr4 77802588 77802625 -77827495 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1178 363 316 10 20 chr4 77802727 77802871 -77827249 + RSINE1 SINE B4 3 145 -20 4 1178 5206 125 91 5 chr4 77804037 77804923 -77825197 - Lx LINE L1 -6 6648 5703 4 1178 441 0 0 0 chr4 77805381 77805430 -77824690 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1178 333 0 0 0 chr4 77805434 77805471 -77824649 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1178 725 288 184 37 chr4 77805521 77806091 -77824029 - L1M2 LINE L1 -1095 5048 4395 4 1178 233 250 0 0 chr4 77806121 77806177 -77823943 + Lx5 LINE L1 6515 6570 -480 4 1178 700 222 0 74 chr4 77806206 77806396 -77823724 + Lx6 LINE L1 7257 7432 -28 4 1178 639 273 53 40 chr4 77807240 77807541 -77822579 + L1M2 LINE L1 5433 5737 -575 4 1178 427 178 22 29 chr4 77807667 77807807 -77822313 - Lx3A LINE L1 0 7009 6857 4 1178 2306 32 49 0 chr4 77808036 77808320 -77821800 + L1Md_F3 LINE L1 6278 6575 -9 4 1178 13232 81 8 4 chr4 77810266 77810376 -77819744 + L1_Mm LINE L1 3969 4079 -1804 4 1178 3213 50 3 0 chr4 77810376 77810760 -77819360 - IAPEY_LTR LTR ERVK 0 385 1 4 1178 13232 81 8 4 chr4 77810760 77812472 -77817648 + L1_Mm LINE L1 4080 5797 -86 4 1178 678 81 47 47 chr4 77812472 77812576 -77817544 + BC1_Mm scRNA scRNA 1 98 -54 4 1178 5078 111 37 1 chr4 77812576 77813332 -77816788 + L1_Mus1 LINE L1 5784 6566 -1 4 1178 678 81 47 47 chr4 77813332 77813356 -77816764 + BC1_Mm scRNA scRNA 99 128 -24 4 1178 630 71 0 0 chr4 77813435 77813519 -77816601 + (GAAAA)n Simple_repeat Simple_repeat 1 84 0 4 1178 1021 299 41 19 chr4 77814351 77814872 -77815248 - L1_Mur3 LINE L1 -170 5677 5143 4 1178 899 161 37 37 chr4 77815350 77815537 -77814583 - B2_Mm2 SINE B2 -8 187 1 4 1178 3252 37 3 0 chr4 77816084 77816465 -77813655 + IAPEY_LTR LTR ERVK 1 382 -3 4 1178 387 0 0 0 chr4 77816465 77816508 -77813612 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 1178 290 373 108 36 chr4 77816524 77816663 -77813457 - RSINE1 SINE B4 -14 151 3 4 1178 4930 160 32 3 chr4 77817154 77818050 -77812070 - Lx2 LINE L1 -2 6995 6074 4 1178 21 0 0 0 chr4 77818560 77818581 -77811539 + AT_rich Low_complexity Low_complexity 1 21 0 4 1178 462 341 24 12 chr4 77819062 77819228 -77810892 + MLT1D LTR MaLR 338 505 0 4 1178 601 325 105 53 chr4 77819269 77819851 -77810269 + Lx9 LINE L1 7005 7616 -28 4 1178 465 139 18 9 chr4 77820197 77820306 -77809814 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 4 1178 22 56 0 0 chr4 77820711 77820747 -77809373 + AT_rich Low_complexity Low_complexity 1 36 0 4 1178 2673 253 31 27 chr4 77820963 77821073 -77809047 + Lx7 LINE L1 6026 6136 -1560 4 1178 4319 10 0 0 chr4 77821073 77821557 -77808563 + L1Md_A LINE L1 6099 6582 0 4 1178 2673 253 31 27 chr4 77821557 77822178 -77807942 + Lx7 LINE L1 6137 6760 -936 4 1178 1069 311 36 22 chr4 77822206 77822564 -77807556 + Lx8 LINE L1 6989 7351 -122 4 1178 1256 43 0 12 chr4 77823431 77823595 -77806525 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 4 1178 3820 202 15 16 chr4 77823595 77824381 -77805739 - Lx4B LINE L1 -20 7038 6253 4 1178 1386 262 64 37 chr4 77824599 77825035 -77805085 + Lx6 LINE L1 6986 7433 -27 4 1178 691 43 0 0 chr4 77825132 77825225 -77804895 + L1_Mus2 LINE L1 6473 6565 -1 4 1178 299 172 30 20 chr4 77826176 77826277 -77803843 + GA-rich Low_complexity Low_complexity 1 102 0 4 1178 327 331 119 28 chr4 77826280 77826423 -77803697 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1178 372 206 8 16 chr4 77826423 77826474 -77803646 + polypurine Low_complexity Low_complexity 1 51 0 4 1178 1162 84 6 16 chr4 77826474 77826656 -77803464 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1178 372 206 8 16 chr4 77826656 77826732 -77803388 + GA-rich Low_complexity Low_complexity 52 127 0 4 1178 453 19 0 0 chr4 77826842 77826896 -77803224 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1178 1069 67 0 0 chr4 77827533 77827667 -77802453 - B1_Mus1 SINE Alu -14 134 1 4 1178 21 0 0 0 chr4 77828404 77828425 -77801695 + AT_rich Low_complexity Low_complexity 1 21 0 4 1178 4286 48 2 15 chr4 77828489 77829035 -77801085 + L1Md_F3 LINE L1 6044 6582 -2 4 1178 2394 242 78 17 chr4 77829147 77829751 -77800369 + Lx6 LINE L1 6807 7460 0 4 1178 195 161 42 31 chr4 77830917 77831013 -77799107 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 4 1178 425 346 24 14 chr4 77831158 77831366 -77798754 - B3 SINE B2 -5 211 2 4 1178 1059 150 61 0 chr4 77833051 77833214 -77796906 + B2_Mm2 SINE B2 3 176 -19 4 1178 635 0 13 0 chr4 77833214 77833289 -77796831 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 4 1178 1059 150 61 0 chr4 77833289 77833305 -77796815 + B2_Mm2 SINE B2 177 192 -3 4 1178 304 339 91 67 chr4 77833419 77833672 -77796448 + LTR88b LTR Gypsy? 84 342 -495 4 1178 258 370 29 16 chr4 77834517 77834759 -77795361 - L1ME3 LINE L1 -168 5994 5750 4 1178 207 243 13 67 chr4 77834923 77834998 -77795122 + CT-rich Low_complexity Low_complexity 3 73 0 4 1178 524 247 159 39 chr4 77835202 77835434 -77794686 + RMER15 LTR ERVL 300 559 -16 4 1178 345 62 0 0 chr4 77835443 77835491 -77794629 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1178 304 324 180 0 chr4 77836385 77836496 -77793624 - B1F1 SINE Alu -17 132 2 4 1178 297 0 0 0 chr4 77838949 77838982 -77791138 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4 1178 1467 129 24 8 chr4 77838984 77839233 -77790887 - Lx3A LINE L1 -8 6973 6721 4 1178 3375 72 18 0 chr4 77839233 77839678 -77790442 - L1Md_F3 LINE L1 0 6584 6132 4 1178 7803 110 20 8 chr4 77839681 77841669 -77788451 - Lx3A LINE L1 -263 6718 4711 4 1178 586 176 23 0 chr4 77841669 77841800 -77788320 + Lx2A1 LINE L1 6873 7006 -2 4 1178 525 253 0 0 chr4 77841800 77841946 -77788174 + GA-rich Low_complexity Low_complexity 1 146 0 4 1178 590 71 0 12 chr4 77843165 77843250 -77786870 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1178 753 93 0 0 chr4 77843250 77843357 -77786763 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1178 384 77 0 0 chr4 77843689 77843741 -77786379 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1178 342 0 0 0 chr4 77843741 77843779 -77786341 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1178 21 36 0 0 chr4 77844174 77844202 -77785918 + AT_rich Low_complexity Low_complexity 1 28 0 5 1178 3287 120 38 11 chr4 77844851 77845373 -77784747 + Lx3_Mus LINE L1 6457 6992 -17 5 1178 270 0 0 0 chr4 77845373 77845403 -77784717 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 1178 216 292 0 0 chr4 77845592 77845640 -77784480 + ID4_ SINE ID 2 49 -34 5 1178 24 0 0 0 chr4 77846903 77846927 -77783193 + AT_rich Low_complexity Low_complexity 1 24 0 5 1178 414 127 0 0 chr4 77847786 77847857 -77782263 + (CATA)n Simple_repeat Simple_repeat 4 74 0 5 1178 25 65 0 0 chr4 77848682 77848728 -77781392 + AT_rich Low_complexity Low_complexity 1 46 0 5 1178 504 0 0 0 chr4 77848913 77848969 -77781151 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1178 548 324 39 45 chr4 77848991 77849169 -77780951 - B3A SINE B2 -21 177 1 5 1178 224 167 37 0 chr4 77849685 77849739 -77780381 + GA-rich Low_complexity Low_complexity 2 57 0 5 1178 329 136 0 15 chr4 77850052 77850119 -77780001 + GA-rich Low_complexity Low_complexity 1 66 0 5 1178 300 199 32 128 chr4 77850239 77850395 -77779725 + Lx9 LINE L1 7502 7642 -2 5 1178 213 39 0 0 chr4 77851315 77851341 -77778779 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1178 507 60 0 0 chr4 77852031 77852098 -77778022 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1178 261 0 0 0 chr4 77853328 77853357 -77776763 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1178 198 0 0 0 chr4 77854206 77854228 -77775892 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1178 234 204 19 0 chr4 77854457 77854511 -77775609 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1179 267 31 0 0 chr4 77857780 77857812 -77772308 + (CGGGG)n Simple_repeat Simple_repeat 2 33 0 5 1179 22 0 0 0 chr4 77857899 77857921 -77772199 + GC_rich Low_complexity Low_complexity 1 22 0 5 1179 28 48 0 0 chr4 77857956 77857998 -77772122 + GC_rich Low_complexity Low_complexity 1 42 0 5 1179 315 121 0 0 chr4 77859171 77859229 -77770891 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 5 1179 233 247 0 12 chr4 77859264 77859346 -77770774 + CT-rich Low_complexity Low_complexity 4 84 0 5 1179 687 244 102 29 chr4 77860983 77861258 -77768862 + MER44A DNA MER2_type 14 308 -31 5 1179 241 368 26 17 chr4 77862527 77862643 -77767477 + MLT2B3 LTR ERVL 223 339 -215 5 1179 24 32 0 0 chr4 77862929 77862960 -77767160 + AT_rich Low_complexity Low_complexity 1 31 0 5 1179 705 268 24 0 chr4 77863183 77863351 -77766769 + Lx6 LINE L1 7053 7224 -236 5 1179 3827 48 13 76 chr4 77864275 77864812 -77765308 + RLTR1C LTR ERV1 1 503 0 5 1179 25 0 0 0 chr4 77864868 77864893 -77765227 + AT_rich Low_complexity Low_complexity 1 25 0 5 1179 2902 195 120 8 chr4 77864979 77865619 -77764501 + RMER6D LTR ERVK 1 712 -8 5 1179 2793 88 47 0 chr4 77867161 77867548 -77762572 + MTB_Mm LTR MaLR 1 405 -2 5 1179 22 80 0 0 chr4 77867552 77867602 -77762518 + AT_rich Low_complexity Low_complexity 1 50 0 5 1179 2328 72 41 0 chr4 77867974 77868293 -77761827 + L1_Mus1 LINE L1 6235 6566 -1 5 1179 365 289 0 11 chr4 77868629 77868720 -77761400 + B2_Mm2 SINE B2 3 92 -103 5 1179 2475 186 189 17 chr4 77868724 77869309 -77760811 - RMER6C LTR ERVK -4 686 1 5 1179 344 322 25 25 chr4 77869314 77869435 -77760685 + B3 SINE B2 93 213 -3 5 1179 4081 156 24 15 chr4 77869464 77870180 -77759940 - Lx2B LINE L1 -6 6994 6273 5 1179 507 112 0 0 chr4 77870381 77870470 -77759650 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1179 1612 306 158 20 chr4 77870867 77871743 -77758377 + Lx9 LINE L1 6381 7376 -268 5 1179 192 125 0 0 chr4 77871813 77871845 -77758275 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1179 261 273 39 13 chr4 77872184 77872262 -77757858 + Lx9 LINE L1 5848 5927 -1717 5 1179 217 0 0 57 chr4 77873883 77873918 -77756202 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1179 585 86 0 0 chr4 77874112 77874205 -77755915 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1179 259 260 25 25 chr4 77874207 77874286 -77755834 - LFSINE_Vert SINE SINE -304 155 77 5 1179 495 33 0 0 chr4 77874351 77874412 -77755708 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 5 1179 261 83 0 0 chr4 77874791 77874827 -77755293 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1179 285 171 11 22 chr4 77875460 77875550 -77754570 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 5 1179 187 271 56 14 chr4 77876308 77876379 -77753741 + L2 LINE L2 1739 1812 -1607 5 1179 366 23 0 0 chr4 77876441 77876484 -77753636 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1179 204 152 22 0 chr4 77876505 77876551 -77753569 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1179 507 311 32 36 chr4 77876556 77876776 -77753344 - Lx7 LINE L1 -395 7301 7083 5 1179 26 82 0 0 chr4 77876820 77876881 -77753239 + AT_rich Low_complexity Low_complexity 1 61 0 5 1179 2502 273 43 19 chr4 77876890 77877679 -77752441 - Lx7 LINE L1 -627 7069 6262 5 1179 216 0 0 0 chr4 77878611 77878635 -77751485 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1179 202 178 44 0 chr4 77880849 77880894 -77749226 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 1179 356 218 83 91 chr4 77880895 77881016 -77749104 - B1F1 SINE Alu -9 140 21 5 1179 197 31 94 0 chr4 77881538 77881570 -77748550 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1179 207 0 0 0 chr4 77881571 77881594 -77748526 + (TTG)n Simple_repeat Simple_repeat 3 25 0 5 1179 1670 220 26 35 chr4 77882308 77882733 -77747387 - MTC LTR MaLR 0 421 1 5 1179 1245 253 50 18 chr4 77882845 77883183 -77746937 - ORR1D2 LTR MaLR 0 370 22 5 1179 627 245 75 1 chr4 77883225 77883389 -77746731 - ORR1D2-int LTR MaLR -1 1369 1220 5 1179 20934 26 0 1 chr4 77883389 77886508 -77743612 - L1Md_T LINE L1 -1 6581 3465 5 1179 430 249 16 19 chr4 77886510 77886658 -77743462 - ORR1D2-int LTR MaLR -189 1391 1112 5 1179 330 67 0 0 chr4 77886795 77886840 -77743280 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1179 3266 185 73 3 chr4 77886904 77887538 -77742582 + RLTR33 LTR ERVK 1 678 0 5 1179 2775 318 43 55 chr4 77887538 77888610 -77741510 - ORR1D2-int LTR MaLR -254 1116 61 5 1179 1098 110 0 0 chr4 77888610 77888774 -77741346 + (GA)n Simple_repeat Simple_repeat 2 165 0 5 1179 2775 318 43 55 chr4 77888774 77888819 -77741301 - ORR1D2-int LTR MaLR -1310 60 14 5 1179 398 141 16 0 chr4 77888830 77888894 -77741226 - ORR1D2 LTR MaLR 0 370 306 5 1179 302 243 117 0 chr4 77889014 77889117 -77741003 - ORR1D2 LTR MaLR -255 115 1 5 1179 261 0 0 0 chr4 77889858 77889887 -77740233 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1179 2200 170 99 2 chr4 77889980 77890392 -77739728 + Lx4A LINE L1 6606 7057 -1 5 1179 187 176 0 0 chr4 77890644 77890678 -77739442 + L4 LINE RTE 1002 1035 -994 5 1179 922 331 10 97 chr4 77891111 77891389 -77738731 + ORR1E LTR MaLR 1 259 -100 5 1179 1942 49 0 4 chr4 77891389 77891635 -77738485 + L1Md_F3 LINE L1 6326 6570 -14 5 1179 922 331 10 97 chr4 77891635 77891747 -77738373 + ORR1E LTR MaLR 260 357 -2 5 1179 1410 306 81 27 chr4 77891754 77892346 -77737774 + ORR1E-int LTR MaLR 5 628 -952 5 1179 252 277 38 23 chr4 77892465 77892598 -77737522 - L1_Mur3 LINE L1 -2923 2957 2823 5 1179 205 200 0 0 chr4 77892605 77892645 -77737475 + T-rich Low_complexity Low_complexity 1 40 0 5 1179 2287 188 85 4 chr4 77892648 77893117 -77737003 + Lx4A LINE L1 6550 7056 -2 5 1179 321 47 0 0 chr4 77893133 77893176 -77736944 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 5 1179 314 266 44 0 chr4 77893181 77893294 -77736826 - L1_Mur3 LINE L1 -3071 2809 2692 5 1179 268 287 74 0 chr4 77893306 77893428 -77736692 - L1_Rod LINE L1 -3924 1923 1793 5 1179 2443 213 37 35 chr4 77893452 77894022 -77736098 + RMER1B Other Other 486 1056 -10 5 1179 991 275 28 51 chr4 77894120 77894454 -77735666 + ORR1D1 LTR MaLR 6 371 -3 5 1179 1382 303 95 36 chr4 77894553 77895171 -77734949 + ORR1D1-int LTR MaLR 748 1486 -94 5 1179 906 314 56 70 chr4 77895177 77895536 -77734584 + ORR1D1 LTR MaLR 1 354 -5 5 1179 552 308 145 5 chr4 77895725 77895759 -77734361 - B3 SINE B2 -4 212 167 5 1179 207 0 0 0 chr4 77895759 77895782 -77734338 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1179 552 308 145 5 chr4 77895782 77895933 -77734187 - B3 SINE B2 -50 166 2 5 1179 1409 50 0 0 chr4 77896202 77896381 -77733739 + L1Md_A LINE L1 6402 6580 -2 5 1179 645 360 84 32 chr4 77896497 77896936 -77733184 - MT2A LTR ERVL -71 462 1 5 1179 288 0 0 0 chr4 77897448 77897480 -77732640 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1179 476 256 81 22 chr4 77898026 77898162 -77731958 + B1_Mur2 SINE Alu 5 148 -1 5 1179 509 307 35 15 chr4 77898349 77898551 -77731569 - B3 SINE B2 -10 206 1 5 1179 270 0 0 0 chr4 77898848 77898878 -77731242 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1179 28 61 0 0 chr4 77899447 77899496 -77730624 + AT_rich Low_complexity Low_complexity 1 49 0 5 1179 22 56 0 0 chr4 77901163 77901199 -77728921 + AT_rich Low_complexity Low_complexity 1 36 0 5 1179 921 101 0 14 chr4 77901590 77901731 -77728389 - L1_Mus1 LINE L1 0 6567 6429 5 1179 3264 259 67 24 chr4 77902859 77904498 -77725622 + RMER1A Other Other 1 1006 -24 5 1179 351 0 0 0 chr4 77904613 77904652 -77725468 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1179 246 261 102 0 chr4 77905823 77905911 -77724209 + RLTR22_Mus LTR ERVK 217 313 -1495 5 1179 2921 201 76 102 chr4 77905888 77906015 -77724105 + RMER12 LTR ERVK 267 387 -935 5 1179 1114 101 0 0 chr4 77906015 77906163 -77723957 + B1_Mus1 SINE Alu 1 148 0 5 1179 2921 201 76 102 chr4 77906163 77906881 -77723239 + RMER12 LTR ERVK 388 1090 -232 5 1179 11680 61 8 2 chr4 77906881 77908352 -77721768 - L1Md_F2 LINE L1 -379 6203 4733 5 1179 318 26 0 0 chr4 77908352 77908391 -77721729 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1179 11680 70 12 3 chr4 77908391 77908799 -77721321 - L1Md_F2 LINE L1 -1151 4732 4310 5 1179 2320 65 0 3 chr4 77908800 77909107 -77721013 + L1Md_F2 LINE L1 6276 6581 -1 5 1179 1007 165 37 17 chr4 77909123 77909349 -77720771 + RLTR22_Mur LTR ERVK 1555 1848 0 5 1179 310 0 0 0 chr4 77909607 77909643 -77720477 + U2 snRNA snRNA 1 36 -152 5 1179 4322 123 23 54 chr4 77910044 77910879 -77719241 - RMER17D2 LTR ERVK 0 809 1 5 1179 28 48 0 0 chr4 77911028 77911070 -77719050 + AT_rich Low_complexity Low_complexity 1 42 0 5 1179 441 239 0 0 chr4 77912027 77912207 -77717913 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1179 377 197 0 0 chr4 77912219 77912285 -77717835 - RMER1A Other Other -275 755 690 5 1179 3639 139 8 2 chr4 77912305 77912909 -77717211 - L1_Mur1 LINE L1 -1127 4759 4152 6 1179 7663 142 47 29 chr4 77912920 77914283 -77715837 + Lx3C LINE L1 5587 6974 -2 6 1179 28 0 0 0 chr4 77914284 77914312 -77715808 + AT_rich Low_complexity Low_complexity 1 28 0 6 1179 27 73 0 0 chr4 77914760 77914815 -77715305 + AT_rich Low_complexity Low_complexity 1 55 0 6 1179 368 285 54 70 chr4 77915533 77915718 -77714402 + MLT1A0 LTR MaLR 167 348 -17 6 1179 429 103 0 0 chr4 77916116 77916184 -77713936 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1179 856 244 29 122 chr4 77916231 77916543 -77713577 + RLTR12B LTR ERVK 40 322 -246 6 1179 684 285 40 61 chr4 77916549 77916794 -77713326 + RLTR12B LTR ERVK 246 488 -40 6 1179 1683 128 25 11 chr4 77916794 77917070 -77713050 + L1_Mus4 LINE L1 6357 6636 0 6 1179 684 285 40 61 chr4 77917070 77917101 -77713019 + RLTR12B LTR ERVK 489 516 -12 6 1179 243 298 42 34 chr4 77917673 77917791 -77712329 - Lx8 LINE L1 -2 7471 7353 6 1179 24 32 0 0 chr4 77920381 77920412 -77709708 + AT_rich Low_complexity Low_complexity 1 31 0 6 1179 323 320 7 32 chr4 77921848 77922003 -77708117 + MLT1A0 LTR MaLR 1 151 -214 6 1179 1610 48 5 0 chr4 77922788 77922998 -77707122 + L1Md_F2 LINE L1 6372 6582 0 6 1179 24 0 0 0 chr4 77923246 77923270 -77706850 + AT_rich Low_complexity Low_complexity 1 24 0 6 1179 1737 172 3 23 chr4 77923629 77923933 -77706187 + ORR1A4 LTR MaLR 32 329 0 6 1179 34 65 0 0 chr4 77923966 77924028 -77706092 + AT_rich Low_complexity Low_complexity 1 62 0 6 1179 273 338 0 0 chr4 77925469 77925537 -77704583 + RSINE1 SINE B4 45 112 -53 6 1179 186 118 0 0 chr4 77925563 77925597 -77704523 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 6 1179 477 0 0 0 chr4 77925598 77925651 -77704469 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1179 379 338 50 100 chr4 77925837 77926241 -77703879 - MTC LTR MaLR -14 407 39 6 1179 297 243 0 63 chr4 77927172 77927251 -77702869 + B3 SINE B2 141 214 -2 6 1179 641 274 55 10 chr4 77927987 77928186 -77701934 - B3 SINE B2 -8 208 1 6 1179 22 0 0 0 chr4 77928971 77928993 -77701127 + AT_rich Low_complexity Low_complexity 1 22 0 6 1179 21 57 0 0 chr4 77929794 77929829 -77700291 + AT_rich Low_complexity Low_complexity 1 35 0 6 1179 2549 155 35 9 chr4 77929877 77930333 -77699787 + Lx LINE L1 6177 6644 -10 6 1179 22 0 0 0 chr4 77930403 77930425 -77699695 + AT_rich Low_complexity Low_complexity 1 22 0 6 1179 25 0 0 0 chr4 77931128 77931153 -77698967 + AT_rich Low_complexity Low_complexity 1 25 0 6 1179 1860 80 0 0 chr4 77931317 77931555 -77698565 - L1Md_F2 LINE L1 -235 6347 6110 6 1179 1566 100 4 13 chr4 77931555 77931788 -77698332 + L1Md_F2 LINE L1 6352 6582 0 6 1179 1178 318 59 10 chr4 77932397 77932902 -77697218 + RMER15-int LTR ERVL 4148 4677 -322 6 1179 873 302 16 32 chr4 77933339 77933647 -77696473 + RMER15 LTR ERVL 273 575 0 6 1179 516 111 0 0 chr4 77933740 77933821 -77696299 + (TATG)n Simple_repeat Simple_repeat 2 82 0 6 1179 450 0 0 0 chr4 77933879 77933929 -77696191 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1179 347 239 0 0 chr4 77935677 77935748 -77694372 + MIRb SINE MIR 179 249 -19 6 1179 3402 83 2 2 chr4 77938180 77938639 -77691481 + L1Md_F2 LINE L1 6122 6580 -2 6 1179 1935 165 27 97 chr4 77938697 77938769 -77691351 - ORR1C1 LTR MaLR 0 378 337 6 1179 261 0 0 0 chr4 77938769 77938798 -77691322 + (TTTAA)n Simple_repeat Simple_repeat 4 32 0 6 1179 2483 193 45 2 chr4 77938801 77939288 -77690832 - Lx4A LINE L1 -5 7053 6546 6 1179 1935 165 27 97 chr4 77939288 77939613 -77690507 - ORR1C1 LTR MaLR -42 336 5 6 1179 1432 323 60 38 chr4 77940191 77941637 -77688483 - Lx8 LINE L1 -632 6841 5329 6 1179 265 309 24 24 chr4 77941667 77941750 -77688370 + RMER1C Other Other 694 776 -566 6 1179 327 287 128 0 chr4 77942665 77942759 -77687361 + MER58A DNA MER1_type 8 113 -111 6 1179 441 262 35 7 chr4 77942776 77942918 -77687202 - L1MB7 LINE L1 -21 6163 6018 6 1179 285 336 31 69 chr4 77943000 77943160 -77686960 + RMER4B LTR ERVK 10 163 -422 6 1179 1455 270 53 29 chr4 77943364 77943818 -77686302 + RMER1C Other Other 870 1334 -8 6 1179 647 264 109 65 chr4 77943874 77944288 -77685832 - Lx8 LINE L1 -748 5132 4701 6 1179 287 271 84 66 chr4 77944317 77944483 -77685637 + Lx8 LINE L1 5830 5998 -1475 6 1179 891 250 36 0 chr4 77944504 77944724 -77685396 - Lx6 LINE L1 -892 6568 6341 6 1179 31692 139 4 2 chr4 77944737 77946298 -77683822 + L1Md_F2 LINE L1 449 1966 -3917 6 1179 197 33 33 0 chr4 77946298 77946328 -77683792 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1179 31692 81 3 3 chr4 77946328 77949943 -77680177 + L1Md_F2 LINE L1 1967 5585 -298 6 1179 7333 73 14 2 chr4 77949944 77950925 -77679195 + L1Md_F2 LINE L1 5588 6580 -2 6 1179 1146 292 87 41 chr4 77950951 77951057 -77679063 - L1_Rod LINE L1 -15 5832 5726 6 1179 390 85 0 0 chr4 77951057 77951116 -77679004 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1179 1146 292 87 41 chr4 77951116 77951712 -77678408 - L1_Rod LINE L1 -122 5725 5098 6 1179 3117 209 97 9 chr4 77951718 77952390 -77677730 - RMER19A LTR ERVK -5 732 2 6 1179 447 285 0 34 chr4 77952393 77952571 -77677549 - L1_Rod LINE L1 -754 5093 4922 6 1179 1265 113 11 0 chr4 77952611 77952797 -77677323 - B2_Mm1t SINE B2 -4 189 2 6 1179 296 200 43 0 chr4 77952807 77952877 -77677243 - L1_Rod LINE L1 -919 4928 4856 6 1179 251 327 28 0 chr4 77952864 77952971 -77677149 + L1M2 LINE L1 4610 4719 -1424 6 1179 246 128 0 0 chr4 77953005 77953044 -77677076 + (GAA)n Simple_repeat Simple_repeat 2 40 0 6 1179 295 185 0 0 chr4 77953101 77953155 -77676965 + L1_Mur3 LINE L1 4833 4886 -994 6 1179 780 266 58 21 chr4 77953184 77953306 -77676814 - B3 SINE B2 -15 201 83 6 1179 360 0 0 0 chr4 77953306 77953346 -77676774 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1179 780 266 58 21 chr4 77953346 77953411 -77676709 - B3 SINE B2 -134 82 7 6 1179 734 56 0 0 chr4 77953694 77953802 -77676318 - L1Md_F3 LINE L1 -14 6570 6463 6 1179 2188 218 19 47 chr4 77953841 77954356 -77675764 - RMER1B Other Other -9 1057 557 6 1179 682 109 0 19 chr4 77955581 77955684 -77674436 - B1_Mus2 SINE Alu -1 146 46 6 1179 292 203 76 30 chr4 77955626 77955692 -77674428 - RLTR25A LTR ERVK -521 582 514 6 1179 881 271 0 5 chr4 77956537 77956741 -77673379 - Lx6 LINE L1 -346 7114 6912 6 1179 899 298 38 13 chr4 77956774 77957087 -77673033 + Lx6 LINE L1 7132 7452 -8 6 1179 22 56 0 0 chr4 77957087 77957123 -77672997 + AT_rich Low_complexity Low_complexity 1 36 0 6 1179 1501 82 47 83 chr4 77957860 77958113 -77672007 + L1_Mus2 LINE L1 6323 6566 0 6 1179 687 88 0 10 chr4 77958124 77958227 -77671893 + L1Md_T LINE L1 630 731 -5993 6 1179 32059 32 67 7 chr4 77958219 77962693 -77667427 + L1Md_T LINE L1 854 5586 -297 6 1179 8124 43 3 0 chr4 77962693 77963684 -77666436 + L1Md_T LINE L1 5587 6580 -2 6 1179 207 0 0 0 chr4 77963948 77963971 -77666149 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1179 7084 66 0 6 chr4 77966030 77966935 -77663185 - L1Md_F2 LINE L1 0 6582 5683 6 1179 761 298 154 3 chr4 77967910 77968196 -77661924 + ORR1D1 LTR MaLR 7 335 -39 6 1179 449 338 22 72 chr4 77968221 77968286 -77661834 - MTEa LTR MaLR -167 212 160 6 1179 477 0 0 0 chr4 77968286 77968339 -77661781 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1179 449 338 22 72 chr4 77968339 77968496 -77661624 - MTEa LTR MaLR -220 159 1 6 1179 917 158 6 0 chr4 77969063 77969240 -77660880 + CT-rich Low_complexity Low_complexity 3 180 0 6 1179 213 39 0 0 chr4 77969331 77969357 -77660763 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1179 269 293 85 48 chr4 77969853 77970018 -77660102 + Lx7 LINE L1 6928 7098 -598 6 1179 24 0 0 0 chr4 77970336 77970360 -77659760 + AT_rich Low_complexity Low_complexity 1 24 0 6 1179 418 266 8 34 chr4 77970440 77970557 -77659563 - PB1D9 SINE Alu -2 118 5 6 1179 23 0 0 0 chr4 77971342 77971365 -77658755 + AT_rich Low_complexity Low_complexity 1 23 0 6 1179 37 69 0 0 chr4 77971522 77971594 -77658526 + AT_rich Low_complexity Low_complexity 1 72 0 6 1179 28 29 0 0 chr4 77971606 77971641 -77658479 + AT_rich Low_complexity Low_complexity 1 35 0 6 1179 21 82 0 0 chr4 77971674 77971723 -77658397 + AT_rich Low_complexity Low_complexity 1 49 0 6 1179 24 32 0 0 chr4 77971808 77971839 -77658281 + AT_rich Low_complexity Low_complexity 1 31 0 6 1179 25 31 0 0 chr4 77972624 77972656 -77657464 + AT_rich Low_complexity Low_complexity 1 32 0 6 1179 183 42 0 0 chr4 77972661 77972685 -77657435 + (CACAA)n Simple_repeat Simple_repeat 4 27 0 6 1179 390 266 138 0 chr4 77972706 77972815 -77657305 + Lx9 LINE L1 6580 6703 -941 6 1179 838 242 81 21 chr4 77972815 77973091 -77657029 - ORR1C2 LTR MaLR -39 345 1 6 1179 807 316 80 77 chr4 77973093 77973817 -77656303 + Lx9 LINE L1 6744 7469 -175 6 1179 486 0 0 0 chr4 77973819 77973873 -77656247 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1179 336 161 0 0 chr4 77973874 77973936 -77656184 + (TAG)n Simple_repeat Simple_repeat 2 63 0 6 1179 2999 140 77 0 chr4 77974042 77974549 -77655571 + Lx3A LINE L1 6430 6975 -6 6 1179 793 221 105 0 chr4 77975092 77975282 -77654838 + URR1A DNA MER1_type 2 211 -15 6 1179 1898 187 15 18 chr4 77975495 77975892 -77654228 + Lx LINE L1 6245 6640 -14 6 1179 21 0 0 0 chr4 77976331 77976352 -77653768 + AT_rich Low_complexity Low_complexity 1 21 0 6 1179 256 306 26 18 chr4 77977086 77977199 -77652921 + RMER15 LTR ERVL 426 539 -36 6 1179 1551 89 0 0 chr4 77977199 77977401 -77652719 - L1_Mus4 LINE L1 -349 6287 6086 6 1179 1962 123 15 15 chr4 77977401 77977810 -77652310 + L1_Mus4 LINE L1 6297 6636 0 6 1179 853 130 0 0 chr4 77978004 77978142 -77651978 + Lx2 LINE L1 6856 6993 -4 6 1179 221 292 0 0 chr4 77979187 77979235 -77650885 + ID SINE ID 12 59 -165 6 1179 241 224 51 17 chr4 77980068 77980127 -77649993 + Lx8 LINE L1 7257 7317 -156 6 1179 687 65 0 0 chr4 77980205 77980298 -77649822 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1179 289 355 81 9 chr4 77980301 77980412 -77649708 - RSINE1 SINE B4 -8 157 39 6 1179 242 283 11 32 chr4 77980852 77980947 -77649173 + CT-rich Low_complexity Low_complexity 4 96 0 6 1179 382 306 0 0 chr4 77981232 77981343 -77648777 + B3A SINE B2 7 117 -81 6 1179 255 31 0 0 chr4 77982513 77982545 -77647575 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1179 991 90 8 0 chr4 77982545 77982679 -77647441 - B1_Mus1 SINE Alu -13 135 1 6 1179 183 42 0 0 chr4 77982781 77982805 -77647315 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1179 180 370 0 0 chr4 77984020 77984074 -77646046 + MIR SINE MIR 59 112 -150 7 1179 602 198 0 25 chr4 77984654 77984773 -77645347 - B3 SINE B2 -99 117 2 7 1179 441 0 0 0 chr4 77985106 77985155 -77644965 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1179 272 72 0 82 chr4 77986385 77986446 -77643674 + A-rich Low_complexity Low_complexity 1 56 0 7 1179 3245 198 67 26 chr4 77986640 77987004 -77643116 + Lx4A LINE L1 583 944 -6142 7 1179 307 0 23 23 chr4 77987004 77987048 -77643072 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1179 3245 151 34 8 chr4 77987048 77987783 -77642337 + Lx4A LINE L1 945 1721 -4156 7 147 4271 204 19 122 chr4 77987788 77988258 -77641862 + Lx4A LINE L1 3582 3919 -1967 7 1180 6889 133 32 14 chr4 77988258 77989396 -77640724 + Lx3B LINE L1 5812 6969 -4 7 1180 5138 148 31 11 chr4 77989396 77990343 -77639777 + Lx4A LINE L1 3893 4849 -1037 7 1180 7755 158 30 26 chr4 77990331 77992009 -77638111 + Lx4A LINE L1 5388 7057 -1 7 1180 352 200 18 0 chr4 77992873 77992983 -77637137 + (TA)n Simple_repeat Simple_repeat 2 113 0 7 1180 351 324 108 22 chr4 77993012 77993151 -77636969 - Lx4B LINE L1 -33 7025 6875 7 1180 22 0 0 0 chr4 77993158 77993180 -77636940 + AT_rich Low_complexity Low_complexity 1 22 0 7 1180 255 297 50 118 chr4 77993321 77993745 -77636375 + L1_Mur3 LINE L1 901 1295 -6433 7 1180 300 83 0 0 chr4 77993746 77993794 -77636326 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 7 1180 833 101 0 15 chr4 77993821 77993952 -77636168 + (GAAAA)n Simple_repeat Simple_repeat 2 130 0 7 1180 311 60 20 0 chr4 77993990 77994040 -77636080 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1180 210 189 0 19 chr4 77994412 77994466 -77635654 + A-rich Low_complexity Low_complexity 2 54 0 7 1180 360 201 81 15 chr4 77994604 77994740 -77635380 + L1_Mur3 LINE L1 3127 3271 -2609 7 1180 1176 214 106 10 chr4 77994766 77995059 -77635061 + Lx9 LINE L1 7072 7392 -252 7 1180 306 314 38 59 chr4 77995770 77995956 -77634164 + B3A SINE B2 1 182 -16 7 1180 22 0 0 0 chr4 77995967 77995989 -77634131 + AT_rich Low_complexity Low_complexity 1 22 0 7 1180 357 260 48 8 chr4 77998323 77998447 -77631673 + Lx2B LINE L1 6853 6981 -19 7 1180 21 0 0 0 chr4 77998777 77998798 -77631322 + AT_rich Low_complexity Low_complexity 1 21 0 7 1180 246 156 0 0 chr4 77999182 77999227 -77630893 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1180 297 0 0 0 chr4 77999939 77999972 -77630148 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 1180 642 198 32 70 chr4 78000079 78000264 -77629856 - L1_Rod LINE L1 -215 5632 5455 1 1180 842 299 120 52 chr4 78000272 78000966 -77629154 + Lx9 LINE L1 6889 7629 -15 2 1180 21 57 0 0 chr4 78000966 78001001 -77629119 + AT_rich Low_complexity Low_complexity 1 35 0 3 1180 291 219 0 0 chr4 78001004 78001068 -77629052 + Charlie12 DNA MER1_type 1898 1961 -912 4 1180 3959 59 20 0 chr4 78001825 78002334 -77627786 + L1Md_F3 LINE L1 6052 6570 -14 5 1180 380 242 32 75 chr4 78002340 78002473 -77627647 - Lx5 LINE L1 -6 7052 6926 6 1180 2756 226 39 7 chr4 78002519 78003100 -77627020 - Lx5 LINE L1 -149 6901 6335 6 1180 3731 174 36 18 chr4 78003093 78003813 -77626307 + Lx5 LINE L1 5059 5791 -86 7 1180 6442 104 52 6 chr4 78003813 78004801 -77625319 + Lx3_Mus LINE L1 5977 7009 0 8 1180 2853 225 88 80 chr4 78004801 78005322 -77624798 + Lx5 LINE L1 5784 6334 -716 7 1180 28 79 0 0 chr4 78006129 78006192 -77623928 + AT_rich Low_complexity Low_complexity 1 63 0 9 1180 1346 145 13 4 chr4 78006195 78006424 -77623696 - L1_Mus3 LINE L1 -7 6631 6401 1 1180 899 117 0 7 chr4 78006950 78007088 -77623032 - B1_Mm SINE Alu -10 137 1 1 1180 361 236 106 85 chr4 78007088 78007149 -77622971 - MT2B LTR ERVL -433 151 73 1 1180 282 343 65 0 chr4 78007793 78007901 -77622219 + MLT1D LTR MaLR 356 470 -35 1 1180 1044 274 56 3 chr4 78009927 78010231 -77619889 - Lx9 LINE L1 -321 7323 7004 1 1180 197 274 191 14 chr4 78010326 78010431 -77619689 - MIRb SINE MIR -53 155 37 1 1180 384 391 80 0 chr4 78011077 78011228 -77618892 + RSINE1 SINE B4 1 163 -2 1 1180 210 191 0 0 chr4 78011260 78011307 -77618813 + GA-rich Low_complexity Low_complexity 4 50 0 1 1180 247 223 31 21 chr4 78011324 78011420 -77618700 + (CAGAGA)n Simple_repeat Simple_repeat 6 102 0 1 1180 1123 136 118 5 chr4 78011780 78011850 -77618270 - L1Md_F2 LINE L1 -11 6571 6483 1 1180 186 43 0 0 chr4 78011850 78011873 -77618247 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 2 1180 1123 136 118 5 chr4 78011873 78012023 -77618097 - L1Md_F2 LINE L1 -100 6482 6327 1 1180 251 260 36 55 chr4 78012181 78012291 -77617829 - Lx4A LINE L1 -73 6985 6878 2 1180 1734 141 21 38 chr4 78012278 78012607 -77617513 - Lx3C LINE L1 -1300 5676 5350 2 1180 10268 169 8 24 chr4 78012604 78015465 -77614655 - Lx LINE L1 0 6654 3838 2 1180 5801 169 25 212 chr4 78015494 78016088 -77614032 - Lx3C LINE L1 -544 5333 4736 2 1180 360 0 0 0 chr4 78016088 78016128 -77613992 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2 1180 5801 169 25 212 chr4 78016128 78016148 -77613972 - L1_Mur2 LINE L1 -1142 4735 4735 2 1180 4115 2 2 0 chr4 78016148 78016607 -77613513 - L1Md_A LINE L1 0 6582 6123 2 1180 5801 169 25 212 chr4 78016607 78018116 -77612004 - Lx3C LINE L1 -1142 4735 3606 2 1180 37692 41 2 3 chr4 78018118 78024356 -77605764 - L1Md_T LINE L1 0 6585 255 2 1180 9411 160 55 14 chr4 78024344 78024730 -77605390 - Lx3C LINE L1 -2260 3617 3226 2 1180 225 0 0 0 chr4 78024730 78024755 -77605365 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1180 9411 160 55 14 chr4 78024755 78025891 -77604229 - Lx3C LINE L1 -2652 3225 2049 2 1180 180 77 0 0 chr4 78025891 78025917 -77604203 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1180 9411 160 55 14 chr4 78025917 78026373 -77603747 - Lx3C LINE L1 -3829 2048 1560 2 1180 552 284 174 17 chr4 78028117 78028572 -77601548 + MLT1F1 LTR MaLR 26 559 -10 3 1180 266 270 105 29 chr4 78028596 78028806 -77601314 - L1M5 LINE L1 -1299 4847 4622 3 1180 180 111 0 0 chr4 78028823 78028850 -77601270 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 1180 518 299 107 49 chr4 78029089 78029521 -77600599 - L1M5 LINE L1 -1854 4292 3836 3 1180 397 327 144 38 chr4 78029681 78030161 -77599959 - L1M5 LINE L1 -2400 3746 3216 3 1180 647 384 69 23 chr4 78030248 78030597 -77599523 + ORR1D2 LTR MaLR 6 370 0 3 1180 24 32 0 0 chr4 78031399 78031430 -77598690 + AT_rich Low_complexity Low_complexity 1 31 0 3 1180 1625 235 47 32 chr4 78032198 78032606 -77597514 + MTC LTR MaLR 8 421 0 3 1180 23 0 0 0 chr4 78032620 78032643 -77597477 + AT_rich Low_complexity Low_complexity 1 23 0 3 1180 6284 78 4 0 chr4 78032827 78033662 -77596458 + L1Md_F2 LINE L1 4748 5585 -298 3 1180 7686 58 2 21 chr4 78033664 78034665 -77595455 + L1Md_F2 LINE L1 5588 6569 -13 3 1180 2585 92 0 3 chr4 78036546 78036893 -77593227 + ORR1A1 LTR MaLR 1 346 0 3 1180 405 0 0 0 chr4 78037183 78037228 -77592892 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1180 1287 64 43 5 chr4 78037321 78037509 -77592611 - L1_Mus2 LINE L1 0 6566 6372 4 1180 189 0 0 0 chr4 78037604 78037625 -77592495 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1180 333 0 0 0 chr4 78037625 78037661 -77592459 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1180 321 26 0 0 chr4 78038100 78038138 -77591982 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1180 750 129 0 0 chr4 78038138 78038278 -77591842 + (GA)n Simple_repeat Simple_repeat 1 140 0 4 1180 510 288 96 84 chr4 78038278 78038531 -77591589 + Lx8 LINE L1 7073 7326 -147 4 1180 1003 117 7 0 chr4 78038531 78038676 -77591444 + B1_Mus1 SINE Alu 1 146 -2 4 1180 510 288 96 84 chr4 78038676 78038778 -77591342 + Lx8 LINE L1 7327 7432 -41 4 1180 299 294 14 7 chr4 78038892 78039036 -77591084 + L1M3 LINE L1 5205 5349 -791 4 1180 23 33 0 0 chr4 78040695 78040725 -77589395 + AT_rich Low_complexity Low_complexity 1 30 0 4 1180 516 32 0 0 chr4 78041119 78041181 -77588939 + (TATG)n Simple_repeat Simple_repeat 2 63 0 4 1180 234 392 108 5 chr4 78042102 78042325 -77587795 + L4 LINE RTE 1506 1751 -278 5 1180 463 218 79 0 chr4 78042906 78043007 -77587113 + PB1D9 SINE Alu 12 120 0 5 1180 192 152 0 0 chr4 78043614 78043647 -77586473 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1180 433 291 164 23 chr4 78043798 78044142 -77585978 + Lx8 LINE L1 6415 6806 -667 5 1180 931 299 85 87 chr4 78044246 78044751 -77585369 + Lx8 LINE L1 6823 7326 -147 5 1180 600 53 0 0 chr4 78044751 78044827 -77585293 + (GGA)n Simple_repeat Simple_repeat 1 76 0 5 1180 3158 51 8 0 chr4 78044977 78045369 -77584751 + MTA_Mm LTR MaLR 2 396 0 5 1180 1940 85 11 0 chr4 78045899 78046159 -77583961 - L1_Mus2 LINE L1 -438 6128 5866 5 1180 3273 62 0 44 chr4 78046159 78046611 -77583509 + L1_Mus2 LINE L1 6135 6566 0 5 1180 333 0 0 0 chr4 78046800 78046837 -77583283 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1180 213 175 0 0 chr4 78047318 78047358 -77582762 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1180 471 63 0 0 chr4 78047362 78047425 -77582695 + (TATG)n Simple_repeat Simple_repeat 3 65 0 5 1180 409 362 26 16 chr4 78047469 78047660 -77582460 + B3A SINE B2 6 198 0 6 1180 191 390 0 12 chr4 78048737 78048820 -77581300 + L2c LINE L2 3283 3364 -23 6 1180 5592 64 0 10 chr4 78048847 78049574 -77580546 + L1Md_F2 LINE L1 5851 6570 -12 6 1180 273 222 265 29 chr4 78050782 78051139 -77578981 - L1M2 LINE L1 -3275 2865 2416 6 1180 556 306 103 22 chr4 78051327 78051685 -77578435 - L1MC LINE L1 -2053 4093 3707 6 1180 492 315 0 7 chr4 78052430 78052574 -77577546 - B1_Mur4 SINE Alu -7 143 1 6 1180 1744 233 62 46 chr4 78052597 78053100 -77577020 + RMER5 LTR ERV1 15 525 -9 6 1180 435 83 0 0 chr4 78053746 78053806 -77576314 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1180 246 297 84 99 chr4 78053812 78053954 -77576166 - B2_Mm2 SINE B2 -50 145 6 6 1180 2131 195 134 74 chr4 78054322 78054947 -77575173 - RMER6C LTR ERVK -15 675 13 6 1180 2425 237 39 12 chr4 78054947 78055507 -77574613 + RLTR20B3 LTR ERVK 1 575 -2 7 1180 542 54 14 0 chr4 78055930 78056004 -77574116 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 7 1180 677 150 0 16 chr4 78056066 78056195 -77573925 + CT-rich Low_complexity Low_complexity 2 128 0 7 1180 255 61 0 0 chr4 78056205 78056238 -77573882 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1180 450 0 0 0 chr4 78056238 78056287 -77573833 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1180 309 324 0 36 chr4 78056465 78056577 -77573543 + L3b LINE CR1 227 334 -148 7 1180 2098 221 7 21 chr4 78056907 78057333 -77572787 + MTC LTR MaLR 1 420 -1 7 1180 655 251 158 45 chr4 78057503 78057833 -77572287 - RLTR9A LTR ERVK -1 367 1 7 1180 253 216 21 54 chr4 78058027 78058120 -77572000 + CT-rich Low_complexity Low_complexity 1 90 0 7 1180 185 0 40 0 chr4 78058140 78058165 -77571955 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1180 1155 284 137 104 chr4 78059777 78060927 -77569193 - RMER12 LTR ERVK -135 1187 1 8 1180 1152 342 38 42 chr4 78060927 78061616 -77568504 + Lx8 LINE L1 6779 7464 -9 8 1180 198 0 0 0 chr4 78062546 78062568 -77567552 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1180 204 225 0 0 chr4 78062733 78062773 -77567347 + CT-rich Low_complexity Low_complexity 2 41 0 8 1180 203 0 0 36 chr4 78064524 78064552 -77565568 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 8 1180 573 15 0 0 chr4 78065412 78065478 -77564642 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1180 22 35 0 0 chr4 78065500 78065529 -77564591 + AT_rich Low_complexity Low_complexity 1 29 0 8 1180 276 213 0 31 chr4 78066711 78066792 -77563328 - ORR1A4 LTR MaLR 0 329 253 8 1180 4225 233 41 80 chr4 78066792 78067357 -77562763 - Lx2 LINE L1 -26 6971 6417 8 1180 561 15 0 0 chr4 78067357 78067423 -77562697 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1180 6074 200 28 35 chr4 78067423 78069215 -77560905 - Lx2 LINE L1 -581 6416 4668 8 1180 3698 171 10 20 chr4 78069217 78069931 -77560189 + Lx2 LINE L1 3981 4687 -1196 8 1180 1530 175 92 30 chr4 78069931 78070267 -77559853 - ORR1B1 LTR MaLR -37 357 1 9 1180 5326 112 90 6 chr4 78070671 78071113 -77559007 - RMER17A2 LTR ERVK 0 906 447 9 1180 645 14 0 0 chr4 78071113 78071187 -77558933 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1180 5326 112 90 6 chr4 78071187 78071580 -77558540 - RMER17A2 LTR ERVK -460 446 2 9 1180 405 304 88 26 chr4 78072227 78072534 -77557586 - L1M5 LINE L1 -1051 5095 4770 9 1180 261 274 46 46 chr4 78072954 78073084 -77557036 - L1M5 LINE L1 -2542 3604 3475 9 1180 363 230 69 0 chr4 78073446 78073533 -77556587 + ORR1D1 LTR MaLR 68 160 -214 9 1180 214 211 0 37 chr4 78073573 78073627 -77556493 + C-rich Low_complexity Low_complexity 1 52 0 9 1180 270 262 0 0 chr4 78073623 78073684 -77556436 + (CCCTAG)n Simple_repeat Simple_repeat 1 61 0 9 1180 316 264 55 0 chr4 78073820 78073911 -77556209 + ORR1D1 LTR MaLR 278 373 -11 9 1180 24 0 0 0 chr4 78074048 78074072 -77556048 + AT_rich Low_complexity Low_complexity 1 24 0 9 1180 528 288 60 15 chr4 78074227 78074558 -77555562 - L1M5 LINE L1 -3163 2983 2638 9 1180 723 224 0 0 chr4 78075571 78075745 -77554375 + CT-rich Low_complexity Low_complexity 1 174 0 9 1180 216 0 0 0 chr4 78077277 78077301 -77552819 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1180 272 317 115 74 chr4 78077493 78077762 -77552358 - RMER12 LTR ERVK 0 1322 1043 1 1180 5701 97 1 6 chr4 78077926 78078750 -77551370 - RLTR22_Mus LTR ERVK -985 823 4 1 1180 2527 250 85 19 chr4 78079378 78080279 -77549841 - Lx2B LINE L1 -5 7053 5998 1 1180 1043 142 83 60 chr4 78080281 78080498 -77549622 - Lx2 LINE L1 -11 6986 6765 1 1180 5125 147 26 1 chr4 78080487 78081339 -77548781 - Lx2 LINE L1 -352 6645 5773 1 1180 1226 186 57 0 chr4 78081336 78081584 -77548536 - Lx3C LINE L1 -988 5988 5727 1 1180 34458 76 4 6 chr4 78081593 78087717 -77542403 - L1Md_F3 LINE L1 -20 6564 458 1 1180 15547 194 52 102 chr4 78087725 78090961 -77539159 - Lx3C LINE L1 -148 5729 2477 1 1180 1819 100 22 18 chr4 78090961 78091235 -77538885 - MTB LTR MaLR -125 275 1 1 1180 15547 194 52 102 chr4 78091235 78092544 -77537576 - Lx3C LINE L1 -148 2476 1159 1 1180 4726 78 2 5 chr4 78092540 78093184 -77536936 + L1Md_F2 LINE L1 4945 5586 -297 1 1180 6960 87 6 35 chr4 78093185 78094198 -77535922 + L1Md_F2 LINE L1 5588 6570 -12 1 1180 1041 251 78 3 chr4 78094198 78094542 -77535578 - Lx3C LINE L1 -5813 1171 802 1 1180 186 71 0 0 chr4 78094751 78094779 -77535341 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1180 429 225 0 0 chr4 78095050 78095130 -77534990 + MTE2b LTR MaLR 19 98 -281 1 1180 817 318 60 4 chr4 78095124 78095392 -77534728 + MTE2b LTR MaLR 52 334 -45 1 1180 431 287 46 59 chr4 78095423 78095575 -77534545 + RSINE1 SINE B4 16 165 0 1 1180 784 175 6 23 chr4 78096034 78096209 -77533911 - Lx LINE L1 -1 6653 6482 1 1180 22 0 0 0 chr4 78096523 78096545 -77533575 + AT_rich Low_complexity Low_complexity 1 22 0 1 1180 396 0 0 0 chr4 78097397 78097441 -77532679 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1180 450 0 0 0 chr4 78097445 78097495 -77532625 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1180 221 183 133 0 chr4 78097520 78097580 -77532540 + RSINE1 SINE B4 54 121 -44 1 1180 620 361 15 4 chr4 78097614 78097884 -77532236 - B4A SINE B4 -19 273 1 1 1180 674 305 70 41 chr4 78098177 78098522 -77531598 - Lx8 LINE L1 -819 6654 6300 1 1180 1059 296 93 35 chr4 78099031 78099640 -77530480 - Lx8 LINE L1 -1559 5914 5225 1 1180 225 65 0 0 chr4 78099640 78099671 -77530449 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1180 1059 294 97 36 chr4 78099671 78099849 -77530271 - Lx8 LINE L1 -623 5224 5049 1 1180 291 309 11 11 chr4 78100071 78100166 -77529954 + GA-rich Low_complexity Low_complexity 1 95 0 1 1180 510 128 0 0 chr4 78101270 78101364 -77528756 + (TC)n Simple_repeat Simple_repeat 2 95 0 1 1180 381 22 0 0 chr4 78101364 78101410 -77528710 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1180 441 0 0 0 chr4 78101410 78101458 -77528662 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1180 1242 97 0 0 chr4 78101466 78101642 -77528478 + L1_Mus1 LINE L1 6392 6567 0 1 1180 387 0 0 0 chr4 78103928 78103971 -77526149 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1180 29 70 0 0 chr4 78104269 78104326 -77525794 + AT_rich Low_complexity Low_complexity 1 57 0 1 1180 266 238 12 48 chr4 78104746 78104830 -77525290 + L1M4b LINE L1 2274 2354 -4980 1 1180 1076 301 53 24 chr4 78104982 78105322 -77524798 - MTE2a LTR MaLR -8 371 22 1 1180 34005 65 1 1 chr4 78105429 78110439 -77519681 + L1Md_F3 LINE L1 422 5585 -298 1 1180 7831 55 8 0 chr4 78110440 78111430 -77518690 + L1Md_F3 LINE L1 5587 6584 0 1 1180 345 331 24 0 chr4 78111781 78111905 -77518215 - MTEa-int LTR MaLR -7 1573 1447 1 1180 322 323 94 8 chr4 78111947 78112075 -77518045 + B3 SINE B2 76 214 -2 1 1180 2918 322 64 21 chr4 78112069 78113139 -77516981 - MTEa-int LTR MaLR -119 1461 347 1 1180 421 221 107 48 chr4 78113560 78113764 -77516356 - Lx6 LINE L1 -1132 5926 5704 1 1180 2038 195 32 19 chr4 78113764 78114141 -77515979 + MTC LTR MaLR 34 415 -6 1 1180 813 340 52 26 chr4 78114152 78114496 -77515624 - MTEa-int LTR MaLR -1227 353 1 1 1180 565 333 52 32 chr4 78114504 78114755 -77515365 - MTEa LTR MaLR -9 370 115 1 1180 406 319 0 16 chr4 78115179 78115300 -77514820 - MTEa LTR MaLR -260 119 1 1 1180 970 91 8 0 chr4 78115634 78115766 -77514354 + B1_Mus1 SINE Alu 5 137 -11 1 1180 666 233 11 16 chr4 78115804 78115987 -77514133 + Lx9 LINE L1 7297 7478 -166 1 1180 3326 136 57 0 chr4 78116003 78116526 -77513594 - MT2B2 LTR ERVL -28 556 4 1 1180 189 139 0 0 chr4 78116568 78116611 -77513509 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1180 329 223 63 21 chr4 78116625 78116767 -77513353 + Lx9 LINE L1 7489 7636 -8 1 1180 336 326 74 11 chr4 78116903 78117092 -77513028 + L1M5 LINE L1 5375 5575 -604 1 1180 1007 267 100 55 chr4 78117110 78117510 -77512610 - MTD LTR MaLR 0 419 2 1 1180 1836 159 42 8 chr4 78117657 78118013 -77512107 + Lx2A1 LINE L1 6619 6986 -22 1 1180 270 0 0 0 chr4 78118015 78118045 -77512075 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1180 434 216 99 0 chr4 78118060 78118171 -77511949 - RMER1A Other Other -10 1020 899 1 1180 812 158 7 0 chr4 78118172 78118324 -77511796 + (CATA)n Simple_repeat Simple_repeat 2 154 0 1 1180 1692 163 115 63 chr4 78118325 78118524 -77511596 - RMER1A Other Other -119 911 716 1 1180 1092 103 123 16 chr4 78118524 78118711 -77511409 + L1_Mus3 LINE L1 6426 6632 -6 1 147 1692 163 115 63 chr4 78118711 78118956 -77511164 - RMER1A Other Other -315 715 444 1 1181 215 329 0 0 chr4 78118957 78119036 -77511084 + G-rich Low_complexity Low_complexity 1 79 0 1 1181 750 287 107 52 chr4 78119036 78119382 -77510738 - RMER1A Other Other -575 455 91 1 1181 249 298 11 35 chr4 78119939 78120026 -77510094 + GA-rich Low_complexity Low_complexity 2 86 0 1 1181 349 269 78 50 chr4 78120589 78120730 -77509390 + RLTR23 LTR ERV1 286 430 0 1 1181 661 232 31 16 chr4 78120731 78120924 -77509196 - Lx5 LINE L1 -1138 5912 5717 1 1181 464 291 126 35 chr4 78120916 78121201 -77508919 + Lx6 LINE L1 5966 6276 -1184 1 1181 310 31 78 0 chr4 78121202 78121266 -77508854 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1181 393 324 10 42 chr4 78121309 78121502 -77508618 + Lx5 LINE L1 6470 6656 -394 1 1181 397 33 66 0 chr4 78121518 78121579 -77508541 + (CAAAA)n Simple_repeat Simple_repeat 4 68 0 1 1181 1132 293 35 31 chr4 78121581 78122003 -77508117 + Lx6 LINE L1 7011 7434 -26 1 1181 954 211 5 10 chr4 78122559 78122760 -77507360 + Lx5 LINE L1 6763 6962 -88 1 1181 407 211 154 59 chr4 78122787 78122923 -77507197 + Lx5 LINE L1 6478 6626 -424 1 1181 3271 21 39 0 chr4 78123119 78123500 -77506620 + MTA_Mm LTR MaLR 1 396 0 1 1181 9175 31 3 2 chr4 78123500 78124595 -77505525 + MTA_Mm-int LTR MaLR 1 1096 -2 1 1181 3271 21 39 0 chr4 78124597 78124978 -77505142 + MTA_Mm LTR MaLR 1 396 0 1 1181 3688 58 2 13 chr4 78125038 78125506 -77504614 - L1_Mus1 LINE L1 0 6567 6105 1 1181 1083 137 0 5 chr4 78126025 78126216 -77503904 - L1_Mur2 LINE L1 -1507 4370 4181 1 1181 5278 102 3 13 chr4 78126217 78126982 -77503138 + L1_Mus4 LINE L1 5878 6634 -2 1 1181 462 49 0 0 chr4 78127088 78127149 -77502971 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1181 2975 48 3 0 chr4 78127154 78127507 -77502613 - IAPEY2_LTR LTR ERVK -3 354 1 1 1181 3598 91 6 15 chr4 78127507 78128052 -77502068 - IAPEy-int LTR ERVK 0 7513 6974 1 1181 182 377 44 0 chr4 78128053 78128167 -77501953 - L3b LINE CR1 -29 453 335 1 1181 3332 71 9 0 chr4 78128182 78128630 -77501490 - IAPEY3-int LTR ERVK -4991 2689 2238 1 1181 8620 129 20 24 chr4 78128607 78130231 -77499889 - IAPEY3-int LTR ERVK -5698 1982 17 1 1181 3006 48 0 0 chr4 78130231 78130585 -77499535 - IAPEY2_LTR LTR ERVK -3 354 1 1 1181 5288 166 60 14 chr4 78131996 78132101 -77498019 - Lx2B LINE L1 -5 6995 6883 1 1181 189 0 0 0 chr4 78132101 78132122 -77497998 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 1 1181 5288 166 60 14 chr4 78132122 78133047 -77497073 - Lx2B LINE L1 -118 6882 5920 1 1181 4215 148 31 3 chr4 78133047 78133993 -77496127 - L1_Mus4 LINE L1 -324 6312 5343 1 1181 398 248 32 34 chr4 78133994 78134163 -77495957 - L1VL2 LINE L1 -2981 635 472 1 1181 2105 193 94 2 chr4 78134642 78135130 -77494990 - Lx2B LINE L1 -368 6632 6100 1 1181 353 276 68 57 chr4 78135135 78135327 -77494793 + Lx4B LINE L1 6865 7058 0 1 1181 245 98 24 0 chr4 78136297 78136338 -77493782 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1181 399 319 58 58 chr4 78136795 78136968 -77493152 + B4A SINE B4 82 254 -38 1 1181 712 215 43 187 chr4 78136935 78137025 -77493095 + RMER6C LTR ERVK 224 293 -463 1 1181 186 43 0 0 chr4 78137025 78137048 -77493072 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1181 243 0 0 0 chr4 78137049 78137076 -77493044 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1181 1013 216 45 177 chr4 78137076 78137489 -77492631 + RMER6C LTR ERVK 294 690 0 1 1181 180 0 0 0 chr4 78138225 78138245 -77491875 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1181 216 0 0 0 chr4 78138384 78138408 -77491712 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1181 27 92 0 0 chr4 78140706 78140782 -77489338 + AT_rich Low_complexity Low_complexity 1 76 0 1 1181 12654 91 5 13 chr4 78140810 78141784 -77488336 - L1_Mus3 LINE L1 -9 6629 5665 1 1181 6280 59 15 10 chr4 78141784 78142588 -77487532 + RLTR13C2 LTR ERVK 1 808 0 1 1181 12654 147 20 7 chr4 78142588 78144692 -77485428 - L1_Mus3 LINE L1 -219 5664 3525 1 1181 28715 123 8 3 chr4 78144704 78150734 -77479386 - L1_Mus1 LINE L1 0 6567 511 1 1181 22 70 0 0 chr4 78151638 78151681 -77478439 + AT_rich Low_complexity Low_complexity 1 43 0 1 1181 266 362 8 8 chr4 78152340 78152457 -77477663 + MTEa LTR MaLR 1 117 -262 1 1181 1057 83 0 0 chr4 78152459 78152603 -77477517 - L1_Mus4 LINE L1 -357 5526 5383 1 1181 6099 107 44 35 chr4 78152600 78153683 -77476437 + L1_Mus4 LINE L1 5537 6630 -6 1 1181 249 108 0 0 chr4 78154118 78154155 -77475965 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1181 25 31 0 0 chr4 78154574 78154606 -77475514 + AT_rich Low_complexity Low_complexity 1 32 0 1 1181 24 32 0 0 chr4 78155112 78155143 -77474977 + AT_rich Low_complexity Low_complexity 1 31 0 1 1181 2391 96 0 22 chr4 78155901 78156263 -77473857 - L1_Mus4 LINE L1 0 6636 6283 1 1181 1598 166 4 0 chr4 78156960 78157237 -77472883 - Lx4A LINE L1 -232 6826 6549 1 1181 1151 171 5 5 chr4 78157307 78157518 -77472602 - Lx2 LINE L1 -12 6985 6775 1 1181 2966 176 4 15 chr4 78157516 78158064 -77472056 - Lx2 LINE L1 -352 6645 6104 1 1181 2209 89 53 20 chr4 78158064 78158419 -77471701 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1181 7778 89 62 8 chr4 78158419 78159658 -77470462 + IAPEz-int LTR ERVK 8 1313 -5168 1 1181 27153 22 9 0 chr4 78159657 78162899 -77467221 + IAPEz-int LTR ERVK 3210 6478 -3 1 1181 2209 89 53 20 chr4 78162903 78163258 -77466862 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1181 17087 179 30 43 chr4 78163258 78167637 -77462483 - Lx2 LINE L1 -888 6109 1792 1 1181 1912 183 3 0 chr4 78167622 78167939 -77462181 - L1VL4 LINE L1 -5778 524 207 1 1181 1443 296 46 73 chr4 78168183 78168854 -77461266 - ORR1E-int LTR MaLR -926 654 2 1 1181 767 312 54 54 chr4 78168858 78169156 -77460964 - ORR1E LTR MaLR -2 357 60 1 1181 196 309 47 23 chr4 78169690 78169776 -77460344 - L3b LINE CR1 -226 256 169 1 1181 894 251 81 37 chr4 78170346 78170626 -77459494 - ORR1D2 LTR MaLR 0 419 115 1 1181 203 179 0 0 chr4 78171282 78171321 -77458799 + A-rich Low_complexity Low_complexity 2 40 0 1 1181 21 0 0 0 chr4 78171703 78171724 -77458396 + AT_rich Low_complexity Low_complexity 1 21 0 1 1181 1419 259 36 0 chr4 78171731 78172067 -77458053 + MERVL_2A-int LTR ERVL 2044 2391 -3370 1 1181 266 133 22 0 chr4 78172098 78172143 -77457977 + Lx4A LINE L1 6560 6605 -453 1 1181 1431 50 0 0 chr4 78172143 78172323 -77457797 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1181 447 68 0 0 chr4 78172324 78172383 -77457737 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1 1181 803 122 7 0 chr4 78172383 78172531 -77457589 - L1Md_F2 LINE L1 0 6582 6434 2 1181 1890 157 3 0 chr4 78172531 78172818 -77457302 + Lx4A LINE L1 6605 6892 -166 1 1181 341 260 180 8 chr4 78172818 78172946 -77457174 + ORR1D1-int LTR MaLR 1221 1370 0 2 1181 1080 268 55 19 chr4 78172946 78173307 -77456813 + ORR1D1 LTR MaLR 1 374 0 2 1181 712 256 76 22 chr4 78173308 78173584 -77456536 + RCHARR1 DNA MER1_type 684 974 0 2 1181 198 0 0 0 chr4 78176096 78176118 -77454002 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1181 204 179 0 0 chr4 78176135 78176174 -77453946 + T-rich Low_complexity Low_complexity 1 39 0 2 1181 670 319 99 55 chr4 78176240 78177066 -77453054 + L1MC3 LINE L1 6740 7586 -199 2 1181 1176 285 71 10 chr4 78178387 78178781 -77451339 - MTD LTR MaLR 0 419 2 2 1181 9959 10 3 0 chr4 78179053 78180880 -77449240 - L1Md_A LINE L1 0 6582 4752 2 1181 24 0 0 0 chr4 78181232 78181256 -77448864 + AT_rich Low_complexity Low_complexity 1 24 0 2 1181 888 140 139 6 chr4 78181655 78181835 -77448285 - L1_Mus3 LINE L1 -10 6628 6425 2 1181 231 0 0 71 chr4 78183293 78183335 -77446785 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1181 863 310 58 11 chr4 78183634 78183911 -77446209 + MTEa LTR MaLR 42 331 -48 2 1181 372 43 0 0 chr4 78185982 78186028 -77444092 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 1181 522 184 58 14 chr4 78186028 78186166 -77443954 - Lx3A LINE L1 -13 6968 6825 2 1181 1893 119 3 23 chr4 78186166 78186468 -77443652 + Lx3A LINE L1 6670 6965 -16 2 1181 204 67 0 0 chr4 78186468 78186498 -77443622 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 1181 300 27 0 0 chr4 78186534 78186571 -77443549 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 2 1181 493 130 0 11 chr4 78186572 78186665 -77443455 - Lx3A LINE L1 -10 6971 6880 2 1181 298 161 24 12 chr4 78186800 78186882 -77443238 - Lx2 LINE L1 0 6997 6915 2 1181 8473 26 1 0 chr4 78187152 78188616 -77441504 - L1Md_T LINE L1 0 6582 5118 2 1181 740 238 99 11 chr4 78188616 78188807 -77441313 + B3 SINE B2 7 214 -2 2 1181 22 35 0 0 chr4 78189178 78189207 -77440913 + AT_rich Low_complexity Low_complexity 1 29 0 2 1181 795 315 58 11 chr4 78189225 78189501 -77440619 + B4 SINE B4 2 290 -2 2 1181 496 279 31 56 chr4 78190037 78190325 -77439795 + Lx9 LINE L1 5685 5965 -1679 2 1181 575 333 53 4 chr4 78190617 78190843 -77439277 + Lx9 LINE L1 6377 6613 -1031 2 1181 4574 53 31 5 chr4 78190847 78191430 -77438690 + L1Md_F2 LINE L1 5972 6569 -13 2 1181 2274 119 175 9 chr4 78191472 78191895 -77438225 - L1_Mus4 LINE L1 -5 6631 6139 2 1181 2624 52 0 0 chr4 78191900 78192226 -77437894 - IAPEY2_LTR LTR ERVK 0 357 32 2 1181 2852 103 17 0 chr4 78192239 78192512 -77437608 - L1_Mus4 LINE L1 -500 6136 5864 2 1181 256 0 77 0 chr4 78192512 78192551 -77437569 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1181 2852 103 17 0 chr4 78192551 78192686 -77437434 - L1_Mus4 LINE L1 -773 5863 5722 2 1181 4063 236 16 38 chr4 78192690 78193925 -77436195 + Lx9 LINE L1 4997 7050 -594 2 1181 1013 154 5 42 chr4 78194087 78194304 -77435816 - Lx LINE L1 -2 6652 6444 2 1181 5343 115 4 1 chr4 78194355 78195140 -77434980 - L1_Mus1 LINE L1 0 6567 5781 2 1181 27469 113 9 8 chr4 78195141 78199370 -77430750 - L1_Mus1 LINE L1 -380 5503 1266 2 1181 1183 55 7 0 chr4 78199370 78199516 -77430604 - B1_Mus2 SINE Alu 0 147 1 2 1181 27469 78 2 31 chr4 78199516 78199890 -77430230 - L1_Mus1 LINE L1 -5373 1265 901 2 1181 3079 56 5 18 chr4 78199890 78200291 -77429829 + MTA_Mm LTR MaLR 1 396 0 2 1181 8535 64 6 1 chr4 78200291 78201383 -77428737 + MTA_Mm-int LTR MaLR 1 1098 0 2 1181 3125 58 5 0 chr4 78201383 78201777 -77428343 + MTA_Mm LTR MaLR 1 396 0 2 1181 7155 78 2 31 chr4 78201777 78202314 -77427806 - L1_Mus1 LINE L1 -5738 900 364 2 1181 272 379 0 11 chr4 78202307 78202483 -77427637 - L1M2 LINE L1 -511 5780 5607 2 1181 348 234 0 0 chr4 78202621 78202715 -77427405 + GA-rich Low_complexity Low_complexity 2 95 0 2 1181 423 307 125 31 chr4 78203442 78203939 -77426181 - L1_Mur3 LINE L1 -294 5553 5041 2 1181 586 272 153 48 chr4 78203937 78204585 -77425535 + L1_Mur3 LINE L1 4023 4738 -1142 2 1181 393 318 69 8 chr4 78204648 78204778 -77425342 - B4A SINE B4 -149 143 6 2 1181 409 124 52 0 chr4 78204786 78204883 -77425237 + CT-rich Low_complexity Low_complexity 1 102 0 2 1181 551 210 128 0 chr4 78204890 78205015 -77425105 - Lx2B LINE L1 -657 6343 6202 2 1181 501 196 0 0 chr4 78205328 78205420 -77424700 - 4.5SRNA scRNA scRNA -2 92 1 2 1181 6485 226 54 31 chr4 78205576 78206327 -77423793 + L1_Mur3 LINE L1 3008 3821 -2059 2 1181 3684 43 0 0 chr4 78206327 78206822 -77423298 + L1Md_T LINE L1 6132 6582 0 2 1181 6485 226 54 31 chr4 78206822 78207646 -77422474 + L1_Mur3 LINE L1 3822 4626 -1254 2 1181 405 102 0 0 chr4 78207646 78207705 -77422415 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1181 6485 226 54 31 chr4 78207705 78208129 -77421991 + L1_Mur3 LINE L1 4627 5057 -823 2 1181 420 20 0 0 chr4 78208191 78208240 -77421880 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 1181 5214 92 25 35 chr4 78208242 78209290 -77420830 - L1_Mus1 LINE L1 -19 6619 5598 2 1181 392 271 14 7 chr4 78209291 78209432 -77420688 - L1_Mur3 LINE L1 -645 5235 5094 2 1181 189 94 0 0 chr4 78209443 78209475 -77420645 + (CTA)n Simple_repeat Simple_repeat 1 32 0 2 1181 200 264 0 0 chr4 78209475 78209528 -77420592 + (ATG)n Simple_repeat Simple_repeat 2 54 0 2 1181 180 111 0 0 chr4 78209559 78209586 -77420534 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1181 279 0 0 0 chr4 78209684 78209715 -77420405 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2 1181 1982 274 39 30 chr4 78209717 78210307 -77419813 + Lx9 LINE L1 6341 6935 -709 2 1181 219 36 0 0 chr4 78210307 78210335 -77419785 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 2 1181 3357 127 49 2 chr4 78210376 78210906 -77419214 - L1_Mus4 LINE L1 -3 6633 6079 2 1181 1650 87 41 4 chr4 78210906 78211150 -77418970 + L1_Mus4 LINE L1 5822 6074 -562 2 1181 636 291 118 4 chr4 78211144 78211244 -77418876 + Lx9 LINE L1 6926 7026 -618 2 1181 243 0 0 0 chr4 78211244 78211271 -77418849 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 2 1181 636 291 118 4 chr4 78211271 78211408 -77418712 + Lx9 LINE L1 7027 7189 -455 2 1181 1270 224 126 33 chr4 78211716 78211995 -77418125 + Lx9 LINE L1 7175 7476 -168 2 1181 180 125 0 0 chr4 78211995 78212027 -77418093 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1181 1270 224 126 33 chr4 78212027 78212177 -77417943 + Lx9 LINE L1 7477 7644 0 2 1181 604 259 56 56 chr4 78212537 78212770 -77417350 + Lx6 LINE L1 7228 7460 0 2 1181 212 59 29 0 chr4 78213666 78213700 -77416420 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1181 220 175 0 0 chr4 78213704 78213744 -77416376 + MIRm SINE MIR 223 262 -14 2 1181 209 42 41 41 chr4 78214400 78214449 -77415671 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1181 23 33 0 0 chr4 78215360 78215390 -77414730 + AT_rich Low_complexity Low_complexity 1 30 0 2 1181 1369 183 103 144 chr4 78215546 78215935 -77414185 - RLTR41 LTR ERV1 -73 373 1 2 1181 576 308 38 42 chr4 78215977 78216214 -77413906 + B4A SINE B4 2 237 -55 2 1181 554 267 0 30 chr4 78217568 78217703 -77412417 - B1_Mur3 SINE Alu -8 141 11 2 1181 1545 319 54 25 chr4 78217744 78218391 -77411729 - Lx8 LINE L1 -145 7328 6663 2 1181 38 51 0 0 chr4 78218545 78218604 -77411516 + AT_rich Low_complexity Low_complexity 1 59 0 2 1181 1186 253 14 11 chr4 78218676 78218952 -77411168 - Lx4B LINE L1 -4 7054 6778 2 1181 384 353 122 19 chr4 78218952 78219108 -77411012 - B3 SINE B2 -44 172 1 2 1181 1872 232 27 0 chr4 78219233 78219647 -77410473 + MT2A LTR ERVL 1 425 -108 2 1181 247 197 0 16 chr4 78219652 78219714 -77410406 + CT-rich Low_complexity Low_complexity 1 61 0 2 1181 573 24 24 12 chr4 78219771 78219855 -77410265 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 1181 7151 275 56 27 chr4 78219906 78222263 -77407857 + MERVL_2A-int LTR ERVL 14 2438 -3323 2 1181 634 236 32 73 chr4 78222266 78222485 -77407635 + MT2A LTR ERVL 324 533 0 2 1181 221 155 16 65 chr4 78223038 78223100 -77407020 + T-rich Low_complexity Low_complexity 1 59 0 2 1181 7441 74 9 7 chr4 78223141 78224199 -77405921 - L1Md_F2 LINE L1 -1 6581 5521 2 1181 1807 81 4 0 chr4 78224199 78224434 -77405686 + L1Md_F2 LINE L1 5294 5529 -354 2 1181 3467 140 7 11 chr4 78224444 78225006 -77405114 - Lx LINE L1 -5 6649 6090 2 1181 364 250 54 27 chr4 78225136 78225247 -77404873 - LTR52 LTR ERVL -114 307 194 2 1181 22 56 0 0 chr4 78225404 78225440 -77404680 + AT_rich Low_complexity Low_complexity 1 36 0 2 1181 25 0 0 0 chr4 78226557 78226582 -77403538 + AT_rich Low_complexity Low_complexity 1 25 0 2 1181 29 0 0 0 chr4 78227054 78227083 -77403037 + AT_rich Low_complexity Low_complexity 1 29 0 2 1181 381 318 32 0 chr4 78227469 78227595 -77402525 - MIRc SINE MIR -31 237 108 2 1181 189 0 0 0 chr4 78227640 78227661 -77402459 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1181 238 312 125 31 chr4 78227664 78227856 -77402264 - L2a LINE L2 -32 3394 3185 2 1181 735 44 0 0 chr4 78228563 78228654 -77401466 + (CAAAG)n Simple_repeat Simple_repeat 1 91 0 2 1181 22 0 0 0 chr4 78229307 78229329 -77400791 + AT_rich Low_complexity Low_complexity 1 22 0 2 1181 22 0 0 0 chr4 78229775 78229797 -77400323 + AT_rich Low_complexity Low_complexity 1 22 0 2 1181 21 0 0 0 chr4 78229890 78229911 -77400209 + AT_rich Low_complexity Low_complexity 1 21 0 2 1181 24 0 0 0 chr4 78230243 78230267 -77399853 + AT_rich Low_complexity Low_complexity 1 24 0 2 1181 499 281 56 0 chr4 78231022 78231182 -77398938 + RMER15 LTR ERVL 374 542 -33 2 1181 504 0 0 0 chr4 78231182 78231238 -77398882 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1181 279 0 0 0 chr4 78231238 78231268 -77398852 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1181 252 77 0 0 chr4 78231533 78231572 -77398548 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1181 186 43 0 0 chr4 78233358 78233381 -77396739 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1181 240 35 0 0 chr4 78233395 78233424 -77396696 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2 1181 1841 276 7 9 chr4 78233424 78233889 -77396231 - Lx6 LINE L1 -20 7440 6977 2 1181 334 144 9 102 chr4 78234266 78234353 -77395767 - L1_Mus3 LINE L1 -7 6631 6553 2 1181 1547 4 0 8 chr4 78234353 78234610 -77395510 + (TTC)n Simple_repeat Simple_repeat 1 254 0 2 1181 334 144 9 102 chr4 78234610 78234629 -77395491 - L1_Mus3 LINE L1 -86 6552 6535 2 1181 674 109 0 9 chr4 78234631 78234742 -77395378 + (TCC)n Simple_repeat Simple_repeat 3 112 0 2 1181 26 64 0 0 chr4 78234790 78234837 -77395283 + AT_rich Low_complexity Low_complexity 1 47 0 2 1181 7326 142 12 108 chr4 78234845 78235698 -77394422 - Lx3A LINE L1 -8 6973 6204 2 1181 2417 68 7 3 chr4 78235698 78236008 -77394112 + RLTR10E LTR ERVK 1 311 0 3 1181 29418 117 35 46 chr4 78236008 78242084 -77388036 - Lx3A LINE L1 -778 6203 211 2 1181 183 80 0 0 chr4 78242239 78242264 -77387856 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1181 294 29 0 0 chr4 78242453 78242488 -77387632 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1181 183 265 83 101 chr4 78242954 78243063 -77387057 + MIRb SINE MIR 122 228 -40 3 1181 25 51 0 0 chr4 78243408 78243447 -77386673 + AT_rich Low_complexity Low_complexity 1 39 0 3 1181 189 0 0 0 chr4 78243580 78243601 -77386519 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1181 465 324 75 48 chr4 78243679 78244328 -77385792 + L1MA7 LINE L1 5254 5920 -371 3 1181 278 309 40 58 chr4 78244429 78244652 -77385468 + L1MA7 LINE L1 6077 6295 -39 3 1181 1961 183 131 19 chr4 78244685 78245159 -77384961 - RLTR11A2 LTR ERVK 0 527 1 3 1181 405 0 0 0 chr4 78245689 78245734 -77384386 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1181 6012 150 28 13 chr4 78245751 78246771 -77383349 - Lx LINE L1 -2 6652 5618 3 1181 657 0 0 0 chr4 78246842 78246915 -77383205 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1181 186 209 0 0 chr4 78247645 78247688 -77382432 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1181 207 0 0 0 chr4 78247854 78247877 -77382243 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1181 24 0 0 0 chr4 78248749 78248773 -77381347 + AT_rich Low_complexity Low_complexity 1 24 0 3 1181 25 75 0 0 chr4 78249036 78249089 -77381031 + AT_rich Low_complexity Low_complexity 1 53 0 3 1181 21 0 0 0 chr4 78249112 78249133 -77380987 + AT_rich Low_complexity Low_complexity 1 21 0 3 1182 21 36 0 0 chr4 78250011 78250039 -77380081 + AT_rich Low_complexity Low_complexity 1 28 0 3 1182 478 266 40 194 chr4 78251144 78251648 -77378472 + RLTR23 LTR ERV1 5 430 0 3 1182 495 33 0 0 chr4 78252891 78252952 -77377168 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1182 218 122 60 20 chr4 78253598 78253648 -77376472 + T-rich Low_complexity Low_complexity 2 53 0 3 1182 487 204 0 0 chr4 78253886 78253974 -77376146 - Lx9 LINE L1 -745 6899 6812 3 1182 282 116 0 0 chr4 78253977 78254020 -77376100 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1182 313 261 67 8 chr4 78254065 78254185 -77375935 + Lx9 LINE L1 7511 7637 -7 3 1182 350 296 64 81 chr4 78255415 78255532 -77374588 + B3 SINE B2 47 155 -61 3 1182 423 0 0 0 chr4 78255532 78255579 -77374541 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1182 350 296 64 81 chr4 78255579 78255634 -77374486 + B3 SINE B2 156 216 0 3 1182 5569 75 7 1 chr4 78255746 78256657 -77373463 - L1_Mus1 LINE L1 -244 6323 5408 3 1182 2000 64 0 0 chr4 78256657 78256908 -77373212 + L1_Mus1 LINE L1 6315 6565 -2 3 1182 493 255 26 46 chr4 78257211 78257225 -77372895 - RCHARR1 DNA MER1_type -290 684 671 3 1182 3452 93 21 0 chr4 78257225 78257710 -77372410 - L1_Mus3 LINE L1 -3 6635 6141 3 1182 493 255 26 46 chr4 78257710 78257847 -77372273 - RCHARR1 DNA MER1_type -304 670 536 3 1182 3541 111 29 20 chr4 78257855 78258414 -77371706 - Lx LINE L1 -3 6651 6088 3 1182 243 122 0 0 chr4 78258430 78258479 -77371641 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1182 282 288 0 98 chr4 78259040 78259060 -77371060 + MT2B LTR ERVL 147 154 -447 3 1182 481 233 75 33 chr4 78259060 78259180 -77370940 + B1_Mur1 SINE Alu 1 125 -25 3 1182 2998 270 46 45 chr4 78259187 78259606 -77370514 + Lx7 LINE L1 4725 5125 -755 3 1182 6298 39 29 0 chr4 78259606 78260378 -77369742 + L1Md_T LINE L1 5789 6582 0 3 1182 2998 267 38 28 chr4 78260378 78261179 -77368941 + Lx7 LINE L1 5126 5952 -1744 3 1182 716 261 62 0 chr4 78261186 78261397 -77368723 + Lx5 LINE L1 5027 5250 -627 3 1182 2280 141 8 0 chr4 78261415 78261770 -77368350 - Lx2 LINE L1 -335 6662 6305 3 1182 278 102 67 17 chr4 78261765 78261825 -77368295 + Lx2 LINE L1 6935 6997 0 3 1182 2520 205 55 1 chr4 78261882 78262516 -77367604 + Lx5 LINE L1 5333 5998 -1052 3 1182 1271 229 14 67 chr4 78262516 78262876 -77367244 - Lx4B LINE L1 -4 7054 6714 3 1182 596 310 87 33 chr4 78262868 78263562 -77366558 - L1_Rod LINE L1 -446 5434 4711 3 1182 295 63 23 92 chr4 78263717 78263804 -77366316 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 3 1182 3947 46 6 4 chr4 78263942 78264444 -77365676 - L1Md_F3 LINE L1 0 6584 6082 3 1182 4162 38 0 4 chr4 78264444 78264980 -77365140 + L1Md_F3 LINE L1 5553 6086 -498 3 1182 977 193 8 2 chr4 78265397 78265782 -77364338 + CT-rich Low_complexity Low_complexity 1 387 0 3 1182 385 71 14 14 chr4 78266579 78266650 -77363470 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 3 1182 218 267 0 0 chr4 78267326 78267371 -77362749 + polypyrimidine Low_complexity Low_complexity 2 46 0 3 1182 2932 152 80 14 chr4 78268032 78268770 -77361350 - Lx2 LINE L1 -322 6675 6026 3 1182 656 219 26 133 chr4 78268937 78269284 -77360836 - L1_Mur2 LINE L1 -470 5407 5098 3 1182 2131 205 5 2 chr4 78269268 78269684 -77360436 + L1_Mur2 LINE L1 5404 5820 -57 3 1182 1715 87 31 4 chr4 78269694 78270059 -77360061 + RLTR1B LTR ERV1 1 442 -70 3 1182 2859 230 58 26 chr4 78270063 78270803 -77359317 + Lx2B LINE L1 6226 6989 -11 3 1182 387 0 0 0 chr4 78271803 78271846 -77358274 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1182 202 235 24 12 chr4 78272369 78272451 -77357669 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1182 214 167 0 0 chr4 78272378 78272420 -77357700 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1182 219 114 0 0 chr4 78272807 78272842 -77357278 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1182 641 255 112 24 chr4 78273566 78273815 -77356305 + RLTR28B LTR ERVL 188 458 -23 3 1182 2030 184 15 254 chr4 78273827 78274231 -77355889 + Lx6 LINE L1 3237 3627 -2253 3 1182 3573 171 36 9 chr4 78274231 78274891 -77355229 - RLTR33 LTR ERVK 0 678 1 3 1182 2030 184 15 254 chr4 78274891 78275262 -77354858 + Lx6 LINE L1 3628 3810 -2070 3 1182 219 36 0 0 chr4 78275262 78275290 -77354830 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1182 2030 184 15 254 chr4 78275290 78275534 -77354586 + Lx6 LINE L1 3811 4013 -1867 3 1182 2409 178 192 12 chr4 78275555 78276124 -77353996 - RMER6C LTR ERVK -19 671 1 3 1182 6921 219 57 12 chr4 78276125 78276812 -77353308 + Lx6 LINE L1 4009 4725 -1155 3 1182 270 0 0 0 chr4 78276812 78276842 -77353278 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1182 6921 242 54 17 chr4 78276842 78278677 -77351443 + Lx6 LINE L1 4726 6636 -824 3 1182 702 315 83 7 chr4 78278679 78278967 -77351153 + Lx6 LINE L1 7145 7454 -6 3 1182 288 53 0 0 chr4 78279062 78279100 -77351020 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1182 2446 112 8 13 chr4 78279100 78279481 -77350639 - Lx3A LINE L1 -13 6968 6590 3 1182 586 279 25 31 chr4 78280806 78281002 -77349118 - B3 SINE B2 -17 199 5 3 1182 378 0 0 0 chr4 78281307 78281349 -77348771 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1182 443 174 15 29 chr4 78281882 78282018 -77348102 + (TCTG)n Simple_repeat Simple_repeat 3 136 0 3 1182 1762 311 157 33 chr4 78282114 78283097 -77347023 - Lx6 LINE L1 -26 7434 6063 3 1182 192 40 0 0 chr4 78283321 78283346 -77346774 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1182 501 303 53 48 chr4 78284313 78284521 -77345599 + B3 SINE B2 8 216 0 3 1182 1783 86 0 2 chr4 78285024 78285287 -77344833 + L1_Mm LINE L1 4154 4415 -1728 3 1182 6379 54 4 1 chr4 78285287 78286098 -77344022 + L1Md_F2 LINE L1 5770 6582 0 3 1182 29 47 0 0 chr4 78286167 78286210 -77343910 + AT_rich Low_complexity Low_complexity 1 43 0 3 1182 300 164 0 0 chr4 78288314 78288381 -77341739 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1182 1261 152 4 17 chr4 78288673 78288907 -77341213 - Lx LINE L1 -1 6653 6423 3 1182 8180 135 26 1 chr4 78289789 78291091 -77339029 + Lx2 LINE L1 5659 6992 -5 3 1182 638 107 53 8 chr4 78291602 78291734 -77338386 - L1_Mus3 LINE L1 -5 6633 6496 3 1182 3041 61 16 0 chr4 78291786 78292165 -77337955 + IAPEY_LTR LTR ERVK 1 385 0 3 1182 360 0 0 0 chr4 78292807 78292847 -77337273 + (CAT)n Simple_repeat Simple_repeat 2 41 0 3 1182 22 70 0 0 chr4 78293010 78293053 -77337067 + AT_rich Low_complexity Low_complexity 1 43 0 3 1182 305 281 53 0 chr4 78293379 78293493 -77336627 + L1M2 LINE L1 3410 3529 -2614 3 1182 251 123 31 0 chr4 78293510 78293575 -77336545 - MT2A LTR ERVL 0 533 467 3 1182 475 174 9 9 chr4 78293575 78293691 -77336429 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 1182 612 283 15 21 chr4 78293710 78294011 -77336109 - MT2A LTR ERVL -63 521 81 3 1182 659 323 94 39 chr4 78294147 78295358 -77334762 + L1M2 LINE L1 3556 4837 -1306 3 1182 301 295 32 8 chr4 78296579 78296702 -77333418 + L1M2 LINE L1 5502 5627 -673 3 1182 315 256 85 54 chr4 78296822 78297045 -77333075 + L1MA6 LINE L1 6042 6271 -29 3 1182 25 31 0 0 chr4 78297062 78297094 -77333026 + AT_rich Low_complexity Low_complexity 1 32 0 3 1182 223 315 0 0 chr4 78297485 78297539 -77332581 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1182 252 341 34 28 chr4 78298821 78298999 -77331121 - L1M5 LINE L1 -1480 4666 4488 3 1182 4650 78 5 0 chr4 78299008 78299635 -77330485 - L1Md_F2 LINE L1 -1211 4672 4043 3 1182 6392 90 14 2 chr4 78299633 78300524 -77329596 + L1Md_F2 LINE L1 4686 5586 -297 3 1182 7499 68 11 4 chr4 78300525 78301501 -77328619 + L1Md_F2 LINE L1 5588 6570 -12 3 1182 3450 173 5 201 chr4 78301748 78302251 -77327869 + Lx2B LINE L1 4989 5308 -569 3 1182 3222 47 2 2 chr4 78302251 78302653 -77327467 + L1Md_F3 LINE L1 6181 6582 -2 3 1182 7063 188 10 84 chr4 78302653 78304368 -77325752 + Lx2B LINE L1 5309 6999 -1 3 1182 225 0 0 0 chr4 78304435 78304460 -77325660 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1182 2880 47 2 116 chr4 78304672 78305110 -77325010 - RLTR10 LTR ERVK -2 388 1 3 1182 8753 19 0 4 chr4 78305112 78306111 -77324009 - RLTR10-int LTR ERVK -3 1984 990 3 1182 335 248 62 39 chr4 78306193 78306323 -77323797 - RLTR10-int LTR ERVK -5987 1594 1462 3 1182 6991 45 66 2 chr4 78306387 78307300 -77322820 - RLTR10-int LTR ERVK -989 998 20 3 1182 2880 47 2 116 chr4 78307300 78307738 -77322382 - RLTR10 LTR ERVK -2 388 1 3 1182 512 89 0 12 chr4 78309800 78309880 -77320240 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 3 1182 1061 95 0 0 chr4 78309894 78310041 -77320079 - B1_Mus1 SINE Alu 0 148 2 3 1182 6258 107 44 6 chr4 78310067 78311023 -77319097 + L1_Mus4 LINE L1 5638 6629 -7 3 1182 392 358 56 3 chr4 78311162 78311501 -77318619 - L1MA5 LINE L1 -466 5834 5478 3 1182 189 117 16 32 chr4 78313081 78313143 -77316977 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 3 1182 581 318 82 26 chr4 78314051 78314245 -77315875 + B3A SINE B2 11 215 -1 3 1182 425 355 19 25 chr4 78314283 78314442 -77315678 - Lx6 LINE L1 -144 7329 7172 3 1182 764 284 19 35 chr4 78314479 78314738 -77315382 - Lx6 LINE L1 -26 7434 7180 3 1182 4979 65 0 1 chr4 78314752 78315618 -77314502 + L1Md_F2 LINE L1 5345 6209 -373 3 1182 2060 62 0 35 chr4 78315618 78315901 -77314219 + L1Md_F2 LINE L1 6308 6580 -2 3 1182 801 82 0 0 chr4 78315907 78316017 -77314103 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 3 1182 447 196 515 0 chr4 78316057 78316200 -77313920 + 7SK RNA RNA 20 236 -95 3 1182 529 293 20 13 chr4 78316218 78316370 -77313750 - Lx6 LINE L1 -339 7134 6982 3 1182 597 319 188 8 chr4 78316441 78316829 -77313291 - Lx6 LINE L1 -586 6887 6430 3 1182 203 138 0 0 chr4 78317425 78317454 -77312666 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1182 903 132 17 17 chr4 78317455 78317805 -77312315 + (TATATG)n Simple_repeat Simple_repeat 1 350 0 4 1182 655 296 20 35 chr4 78318015 78318218 -77311902 + Lx8 LINE L1 6241 6440 -1033 4 1182 3050 179 113 17 chr4 78318604 78319310 -77310810 - RMER17B LTR ERVK 0 958 185 4 1182 2600 236 45 3 chr4 78319313 78319942 -77310178 - Lx7 LINE L1 -474 7222 6568 4 1182 4641 210 111 22 chr4 78319946 78321345 -77308775 - Lx6 LINE L1 -1525 5935 4420 3 1182 2755 195 26 6 chr4 78321382 78321914 -77308206 - Lx4B LINE L1 -8 7050 6508 4 1182 221 180 32 16 chr4 78321980 78322042 -77308078 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 1182 6364 94 2 11 chr4 78322426 78323325 -77306795 - L1Md_F2 LINE L1 -1 6581 5691 4 1182 21 0 0 0 chr4 78323501 78323522 -77306598 + AT_rich Low_complexity Low_complexity 1 21 0 4 1182 362 263 47 71 chr4 78323540 78323667 -77306453 + MT2B LTR ERVL 155 278 -323 4 1182 932 101 15 2 chr4 78323560 78323696 -77306424 + B1_Mus1 SINE Alu 15 147 -1 4 1182 216 339 0 18 chr4 78326064 78326121 -77303999 - PB1D7 SINE Alu -61 59 4 4 1182 228 302 15 73 chr4 78326137 78326205 -77303915 - 7SLRNA srpRNA srpRNA -234 80 17 4 1182 22 0 0 0 chr4 78326324 78326346 -77303774 + AT_rich Low_complexity Low_complexity 1 22 0 4 1182 204 40 0 0 chr4 78326349 78326374 -77303746 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1182 5301 7 0 0 chr4 78326393 78326982 -77303138 - L1Md_T LINE L1 0 6582 5994 4 1182 4152 22 0 0 chr4 78326982 78327475 -77302645 + L1_Mm LINE L1 3161 3653 -2230 4 1182 235 241 0 0 chr4 78327524 78327582 -77302538 + T-rich Low_complexity Low_complexity 1 58 0 4 1182 1964 94 7 3 chr4 78327598 78327885 -77302235 - L1_Mus2 LINE L1 0 6566 6279 4 1182 35 24 0 0 chr4 78328036 78328078 -77302042 + AT_rich Low_complexity Low_complexity 1 42 0 4 1182 514 351 24 23 chr4 78328206 78328576 -77301544 + L3b LINE CR1 3946 4329 -179 4 1182 27 0 0 0 chr4 78328755 78328782 -77301338 + AT_rich Low_complexity Low_complexity 1 27 0 4 1182 2965 78 2 5 chr4 78330324 78330721 -77299399 + MTA_Mm LTR MaLR 1 396 0 4 1182 6561 98 26 89 chr4 78330721 78331821 -77298299 + MTA_Mm-int LTR MaLR 1 1040 -58 4 1182 2117 41 11 7 chr4 78331821 78332090 -77298030 + L1Md_F2 LINE L1 6305 6574 -8 4 1182 6561 98 26 89 chr4 78332090 78332160 -77297960 + MTA_Mm-int LTR MaLR 1041 1098 0 4 1182 2951 72 8 3 chr4 78332162 78332554 -77297566 + MTA_Mm LTR MaLR 3 396 0 4 1182 1341 284 202 7 chr4 78332554 78332957 -77297163 + Lx6 LINE L1 6271 6968 -492 4 1182 2806 75 29 3 chr4 78332957 78333343 -77296777 + MTA_Mm LTR MaLR 1 396 0 4 1182 1341 309 35 28 chr4 78333343 78333824 -77296296 + Lx6 LINE L1 6969 7458 -2 4 1182 1730 284 65 38 chr4 78334227 78334828 -77295292 - Lx6 LINE L1 -2 7458 6842 4 1182 462 149 0 0 chr4 78334866 78334953 -77295167 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1182 2760 262 56 15 chr4 78334963 78335753 -77294367 - Lx6 LINE L1 -592 6868 6047 4 1182 1856 164 12 6 chr4 78335729 78336048 -77294072 - Lx3B LINE L1 -559 6414 6094 4 1182 7135 93 8 1 chr4 78336060 78337074 -77293046 - RLTR22_Mus LTR ERVK -787 1021 1 4 1182 22883 132 15 10 chr4 78337074 78337776 -77292344 - L1_Mur1 LINE L1 -722 5164 4448 4 1182 1627 61 9 0 chr4 78337776 78337988 -77292132 - L1Md_F3 LINE L1 -15 6569 6356 4 1182 22883 137 16 9 chr4 78337988 78341927 -77288193 - L1_Mur1 LINE L1 -1439 4447 518 4 1182 288 284 31 38 chr4 78341909 78342162 -77287958 - L1_Mur1 LINE L1 -6232 752 457 4 1182 325 355 47 0 chr4 78342269 78342324 -77287796 + Tigger16b DNA Tigger 96 272 -65 4 1182 336 298 53 0 chr4 78342324 78342438 -77287682 - MamRep1161 DNA TcMar -777 180 61 4 1182 23 0 0 0 chr4 78342438 78342461 -77287659 + AT_rich Low_complexity Low_complexity 1 23 0 4 1182 2570 102 19 48 chr4 78343882 78344294 -77285826 - L1_Mus2 LINE L1 -1 6565 6166 4 1182 581 0 14 0 chr4 78345192 78345261 -77284859 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 4 1182 729 314 52 41 chr4 78345732 78346323 -77283797 + L1M2 LINE L1 3096 3693 -2187 4 1182 4826 14 0 0 chr4 78346320 78346871 -77283249 - L1Md_T LINE L1 -213 5670 5120 4 1182 7248 53 0 0 chr4 78346871 78347768 -77282352 + L1Md_T LINE L1 5685 6581 -1 4 1182 522 275 145 41 chr4 78347768 78348114 -77282006 + L1M2 LINE L1 3683 4095 -2048 4 1182 9095 94 58 4 chr4 78348214 78349268 -77280852 - Lx3_Mus LINE L1 -1 7008 5923 4 1182 198 0 0 0 chr4 78349268 78349290 -77280830 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 4 1182 9095 85 49 7 chr4 78349290 78350333 -77279787 - Lx3_Mus LINE L1 -1087 5922 4824 4 1182 1172 291 28 36 chr4 78350344 78350919 -77279201 + L1M2 LINE L1 4182 4751 -1392 4 1182 208 241 0 33 chr4 78351236 78351296 -77278824 + GA-rich Low_complexity Low_complexity 3 60 0 4 1182 731 250 65 14 chr4 78352048 78352263 -77277857 + URR1A DNA MER1_type 1 226 0 4 1182 4746 74 0 14 chr4 78356120 78356762 -77273358 - L1Md_F2 LINE L1 -12 6570 5938 4 1182 21 0 0 0 chr4 78356762 78356783 -77273337 + AT_rich Low_complexity Low_complexity 1 21 0 4 1182 387 0 0 0 chr4 78356787 78356830 -77273290 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1182 2504 264 96 4 chr4 78356970 78357728 -77272392 - Lx7 LINE L1 -272 7424 6597 4 1182 8028 54 1 0 chr4 78357981 78359137 -77270983 - L1Md_F2 LINE L1 -12 6570 5414 4 1182 7857 80 2 0 chr4 78359668 78360711 -77269409 + L1Md_F2 LINE L1 4542 5586 -297 4 1182 8083 42 5 2 chr4 78360712 78361702 -77268418 + L1Md_F2 LINE L1 5588 6580 -2 4 1182 929 315 82 29 chr4 78361840 78362216 -77267904 - MTD LTR MaLR -16 403 8 4 1182 4501 121 17 51 chr4 78362656 78363494 -77266626 - RMER17D2 LTR ERVK 0 809 1 4 1182 1779 157 69 0 chr4 78363902 78364208 -77265912 + ORR1A2 LTR MaLR 1 327 0 4 1182 287 295 71 50 chr4 78364701 78364883 -77265237 + L1_Rod LINE L1 4921 5106 -741 4 1182 590 200 86 23 chr4 78365074 78365202 -77264918 + B1_Mur3 SINE Alu 13 148 -1 4 1182 249 325 113 85 chr4 78365457 78365566 -77264554 - MTEa LTR MaLR -159 220 3 4 1182 304 248 87 19 chr4 78365566 78365669 -77264451 - MLT2B3 LTR ERVL -442 112 3 4 1182 289 362 35 0 chr4 78365854 78365970 -77264150 - Tigger5 DNA MER2_type -3 2403 2284 4 1182 341 380 18 12 chr4 78365963 78366128 -77263992 - Tigger5 DNA MER2_type -2197 209 44 4 1182 231 316 89 11 chr4 78366320 78366499 -77263621 - L1M4b LINE L1 -1272 5734 5542 4 1182 180 0 0 0 chr4 78366500 78366520 -77263600 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 4 1182 212 149 0 56 chr4 78366751 78366822 -77263298 + T-rich Low_complexity Low_complexity 1 67 0 4 1182 1032 79 50 0 chr4 78366822 78366962 -77263158 - B1_Mm SINE Alu 0 147 1 4 1182 351 0 0 0 chr4 78367636 78367675 -77262445 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1182 257 294 131 38 chr4 78367837 78368127 -77261993 - L1M4b LINE L1 -2523 4477 4161 4 1182 693 272 166 23 chr4 78368195 78368805 -77261315 - L1M4b LINE L1 -4091 3243 2547 4 1182 374 335 107 80 chr4 78369045 78369103 -77261017 - MLT2B3 LTR ERVL 0 554 493 4 1182 3538 32 97 0 chr4 78369103 78369536 -77260584 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1182 374 335 107 80 chr4 78369536 78369766 -77260354 - MLT2B3 LTR ERVL -62 492 258 4 1182 7146 91 11 5 chr4 78369801 78370983 -77259137 - L1Md_F2 LINE L1 -1 6581 5393 4 1182 13415 142 12 19 chr4 78370980 78373851 -77256269 - L1_Mus3 LINE L1 -317 6321 3482 4 1182 266 0 29 0 chr4 78373851 78373885 -77256235 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1182 247 137 0 0 chr4 78373885 78373936 -77256184 - MusHAL1 LINE L1 -419 2293 2243 4 1182 34767 73 2 8 chr4 78373934 78379997 -77250123 - L1Md_F3 LINE L1 0 6584 607 4 147 10728 125 16 9 chr4 78379999 78381790 -77248330 - MusHAL1 LINE L1 -454 2258 456 4 1183 1746 270 23 30 chr4 78381784 78382349 -77247771 - L1VL4 LINE L1 -5561 741 181 4 1183 304 132 38 0 chr4 78382431 78382484 -77247636 + L1Md_F3 LINE L1 6427 6481 -103 4 1183 234 0 0 0 chr4 78382538 78382564 -77247556 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1183 9947 42 16 17 chr4 78382663 78384313 -77245807 - L1Md_A LINE L1 0 6582 4884 4 1183 225 183 46 77 chr4 78384313 78384378 -77245742 + RMER20A LTR ERVK 186 248 -268 4 1183 9947 42 16 17 chr4 78384378 78384740 -77245380 - L1Md_A LINE L1 0 4883 4509 4 1183 568 164 64 72 chr4 78384877 78385002 -77245118 + B1_Mus2 SINE Alu 5 128 -19 4 1183 25 31 0 0 chr4 78385012 78385044 -77245076 + AT_rich Low_complexity Low_complexity 1 32 0 4 1183 410 299 58 36 chr4 78385319 78385458 -77244662 - MTE2a LTR MaLR -233 146 5 4 1183 1811 332 73 37 chr4 78385469 78386558 -77243562 - MTE-int LTR MaLR -193 1387 130 4 1183 53 69 0 0 chr4 78386646 78386748 -77243372 + AT_rich Low_complexity Low_complexity 1 102 0 4 1183 2279 179 126 50 chr4 78387031 78387546 -77242574 - RMER4B LTR ERVK -3 582 30 4 1183 1416 92 0 0 chr4 78387546 78387742 -77242378 - L1_Mus1 LINE L1 0 6567 6372 4 1183 2279 179 126 50 chr4 78387742 78387767 -77242353 - RMER4B LTR ERVK -556 29 1 4 1183 356 282 99 44 chr4 78387769 78388062 -77242058 - L1MD LINE L1 -1278 4868 4560 4 1183 1012 55 0 0 chr4 78388808 78388935 -77241185 - B1_Mm SINE Alu 0 147 21 4 1183 393 230 0 94 chr4 78388853 78388949 -77241171 - MT2B LTR ERVL -344 257 171 4 1183 945 74 89 0 chr4 78390266 78390401 -77239719 + B1_Mus2 SINE Alu 1 147 0 4 1183 1020 294 48 28 chr4 78390561 78390969 -77239151 + Lx5 LINE L1 6506 7303 -157 4 1183 420 105 0 0 chr4 78390974 78391050 -77239070 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1183 378 42 0 0 chr4 78391174 78391222 -77238898 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1183 198 0 0 0 chr4 78391704 78391726 -77238394 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 1183 6572 90 8 4 chr4 78392353 78393650 -77236470 + L1Md_F2 LINE L1 353 1659 -4224 4 1183 18796 84 1 1 chr4 78393645 78396229 -77233891 + L1Md_F2 LINE L1 3001 5585 -298 4 1183 7544 74 1 4 chr4 78396230 78397216 -77232904 + L1Md_F2 LINE L1 5587 6569 -13 4 1183 387 0 0 0 chr4 78398697 78398740 -77231380 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1183 9223 129 20 3 chr4 78400229 78401503 -77228617 + Lx2 LINE L1 5587 6886 -111 4 1183 492 48 0 0 chr4 78401503 78401566 -77228554 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1183 9223 129 20 3 chr4 78401566 78401678 -77228442 + Lx2 LINE L1 6887 6997 0 4 1183 23 54 0 0 chr4 78402330 78402367 -77227753 + AT_rich Low_complexity Low_complexity 1 37 0 4 1183 1238 273 38 107 chr4 78402558 78403131 -77226989 + RMER5 LTR ERV1 1 534 0 4 1183 4411 191 54 11 chr4 78403535 78404392 -77225728 - RMER13B LTR ERVK -14 894 1 4 1183 759 301 12 81 chr4 78404854 78405176 -77224944 + RMER15 LTR ERVL 271 570 -5 4 1183 402 120 0 0 chr4 78405377 78405452 -77224668 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1183 257 367 82 72 chr4 78405838 78406032 -77224088 + B4A SINE B4 41 236 -56 4 1183 417 109 0 0 chr4 78406095 78406159 -77223961 + (CATA)n Simple_repeat Simple_repeat 4 67 0 4 1183 299 189 0 51 chr4 78406724 78406802 -77223318 + Lx3C LINE L1 6900 6973 -3 5 1183 1065 159 5 42 chr4 78406837 78407053 -77223067 + L1_Mur2 LINE L1 4745 4952 -925 5 1183 2743 121 0 10 chr4 78407251 78407653 -77222467 - MTB LTR MaLR 0 400 3 5 1183 24 0 0 0 chr4 78407800 78407824 -77222296 + AT_rich Low_complexity Low_complexity 1 24 0 5 1183 1128 76 0 0 chr4 78407928 78408072 -77222048 + B1_Mus1 SINE Alu 5 148 0 5 1183 213 372 56 59 chr4 78408253 78408556 -77221564 + L2 LINE L2 1630 1931 -1488 5 1183 1979 194 176 17 chr4 78408995 78409353 -77220767 + RMER6C LTR ERVK 1 389 -301 5 1183 180 0 0 0 chr4 78409353 78409373 -77220747 + (CAGTT)n Simple_repeat Simple_repeat 4 23 0 5 1183 1979 194 176 17 chr4 78409373 78409555 -77220565 + RMER6C LTR ERVK 390 627 -63 5 1183 23624 117 45 50 chr4 78409555 78410699 -77219421 + Lx3_Mus LINE L1 1605 2803 -3083 5 1183 959 103 14 20 chr4 78410699 78410847 -77219273 + B1_Mus2 SINE Alu 1 147 0 5 1183 23624 117 45 50 chr4 78410847 78411426 -77218694 + Lx3_Mus LINE L1 2804 3255 -2631 5 1183 773 56 0 9 chr4 78411426 78411534 -77218586 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 1183 23624 117 45 50 chr4 78411534 78411767 -77218353 + Lx3_Mus LINE L1 3256 3531 -2355 5 1183 2754 113 7 2 chr4 78411767 78412184 -77217936 - BGLII LTR ERVK 0 421 3 5 1183 23624 117 45 50 chr4 78412184 78413923 -77216197 + Lx3_Mus LINE L1 3532 5287 -599 5 1183 228 35 0 0 chr4 78413923 78413952 -77216168 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1183 23624 130 43 58 chr4 78413952 78414835 -77215285 + Lx3_Mus LINE L1 5288 6169 -840 5 1183 1104 95 0 0 chr4 78414835 78414982 -77215138 + B1_Mus1 SINE Alu 2 148 0 5 1183 6551 157 38 74 chr4 78414982 78415784 -77214336 + Lx3_Mus LINE L1 6170 6921 -88 5 1183 185 0 40 0 chr4 78415804 78415829 -77214291 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 1183 5153 230 170 129 chr4 78415841 78415960 -77214160 + Lx5 LINE L1 3060 3184 -2702 5 1183 189 0 0 0 chr4 78415960 78415981 -77214139 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1183 5955 205 81 110 chr4 78415981 78416853 -77213267 + Lx5 LINE L1 3185 4123 -2927 5 1183 256 306 65 0 chr4 78416853 78416961 -77213159 + RLTR23 LTR ERV1 314 428 -2 5 1183 5955 205 81 110 chr4 78416961 78418757 -77211363 + Lx5 LINE L1 4124 6060 -990 5 1183 2693 72 61 3 chr4 78418757 78419149 -77210971 - RLTR9F LTR ERVK 0 415 1 5 1183 2275 206 47 33 chr4 78419149 78419220 -77210900 + Lx5 LINE L1 6061 6141 -909 5 1183 483 213 0 22 chr4 78419249 78419388 -77210732 + CT-rich Low_complexity Low_complexity 2 137 0 5 1183 229 200 40 0 chr4 78419527 78419577 -77210543 + MTC LTR MaLR 107 158 -263 5 1183 3987 79 63 2 chr4 78419578 78420120 -77210000 + SSU-rRNA_Hsa rRNA rRNA 1258 1832 -37 5 1183 405 258 11 0 chr4 78420123 78420212 -77209908 + MTC LTR MaLR 158 247 -174 5 1183 1368 255 78 25 chr4 78420463 78420861 -77209259 - MTC LTR MaLR 0 421 3 5 1183 292 221 9 9 chr4 78421398 78421512 -77208608 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 1183 273 15 101 43 chr4 78422645 78422714 -77207406 + A-rich Low_complexity Low_complexity 2 74 0 5 1183 1108 320 72 0 chr4 78423731 78424121 -77205999 + MTD LTR MaLR 2 419 0 5 1183 359 339 336 0 chr4 78424121 78424334 -77205786 + MTE2b LTR MaLR 94 378 -1 5 1183 1635 340 92 66 chr4 78424364 78425365 -77204755 + MTE-int LTR MaLR 47 1081 -428 5 1183 218 106 0 21 chr4 78425931 78425979 -77204141 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 1183 188 329 13 52 chr4 78426104 78426181 -77203939 - L2 LINE L2 -1821 1598 1525 5 1183 483 18 0 0 chr4 78426508 78426564 -77203556 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1183 262 304 83 62 chr4 78427637 78427830 -77202290 - LTR29 LTR ERV1 -241 381 185 5 1183 267 31 0 0 chr4 78428071 78428103 -77202017 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1183 733 102 102 0 chr4 78428107 78428225 -77201895 - L1_Mus2 LINE L1 -249 6317 6188 5 1183 1382 107 5 5 chr4 78428224 78428430 -77201690 + L1_Mus2 LINE L1 6328 6533 -33 5 1183 4676 152 51 25 chr4 78428430 78429309 -77200811 - RLTR13D6 LTR ERVK 0 902 1 5 1183 265 5 0 14 chr4 78429309 78429357 -77200763 + L1_Mus2 LINE L1 6529 6565 -1 5 1183 232 264 69 0 chr4 78429362 78429449 -77200671 - L1ME2 LINE L1 -212 5952 5860 5 1183 321 213 0 0 chr4 78431361 78431436 -77198684 - Lx3B LINE L1 -3 6970 6896 5 1183 567 174 7 42 chr4 78431436 78431580 -77198540 - Lx3B LINE L1 -812 6161 6023 5 1183 874 238 15 0 chr4 78431598 78431804 -77198316 - L1_Mur3 LINE L1 -103 5777 5569 5 1183 20970 151 9 38 chr4 78432395 78434926 -77195194 - L1_Mus2 LINE L1 0 6566 4068 5 1183 953 157 0 0 chr4 78434926 78435073 -77195047 + B1_Mus1 SINE Alu 2 148 0 5 1183 20970 186 15 62 chr4 78435073 78438766 -77191354 - L1_Mus2 LINE L1 -1810 4067 667 5 1183 1417 227 68 14 chr4 78439824 78440190 -77189930 + Lx2B LINE L1 6611 6996 -4 5 1183 693 292 18 22 chr4 78441325 78441549 -77188571 - Lx6 LINE L1 -27 7433 7211 5 1183 946 108 10 3 chr4 78441566 78441713 -77188407 - B2_Mm2 SINE B2 -61 155 1 5 1183 2132 335 83 44 chr4 78442147 78442845 -77187275 + Lx8 LINE L1 5580 6375 -1098 5 1183 847 179 184 0 chr4 78442845 78443035 -77187085 - URR1B DNA MER1_type 0 225 1 5 1183 2132 337 87 54 chr4 78443035 78444095 -77186025 + Lx8 LINE L1 6376 7438 -35 5 1183 271 261 0 15 chr4 78444115 78444251 -77185869 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 1183 383 262 0 22 chr4 78444266 78444449 -77185671 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1183 537 261 0 0 chr4 78444461 78444641 -77185479 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1183 522 266 0 0 chr4 78444717 78444894 -77185226 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1183 30 0 0 0 chr4 78445719 78445749 -77184371 + AT_rich Low_complexity Low_complexity 1 30 0 5 1183 252 0 0 0 chr4 78445749 78445777 -77184343 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1183 232 364 209 0 chr4 78445778 78445888 -77184232 - RSINE1 SINE B4 -22 143 11 5 1183 390 42 0 0 chr4 78446938 78446986 -77183134 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1183 377 293 7 0 chr4 78447011 78447151 -77182969 + GA-rich Low_complexity Low_complexity 2 142 0 5 1183 267 360 213 17 chr4 78447196 78447435 -77182685 + B4A SINE B4 3 288 -4 5 1183 28 29 0 0 chr4 78447879 78447914 -77182206 + AT_rich Low_complexity Low_complexity 1 35 0 5 1183 288 259 61 21 chr4 78448724 78448846 -77181274 + B1F1 SINE Alu 1 146 -3 5 1183 198 0 0 0 chr4 78448926 78448948 -77181172 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 5 1183 216 0 0 0 chr4 78449046 78449070 -77181050 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1183 397 86 0 33 chr4 78449468 78449528 -77180592 + B1_Mus1 SINE Alu 3 60 -88 5 1183 395 0 0 161 chr4 78449530 78449847 -77180273 + (CAGAG)n Simple_repeat Simple_repeat 1 265 0 5 1183 680 85 0 0 chr4 78449850 78449944 -77180176 + B1_Mus2 SINE Alu 42 135 -12 5 1183 291 28 0 0 chr4 78449944 78449980 -77180140 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 5 1183 454 243 42 63 chr4 78450077 78450266 -77179854 - Lx4B LINE L1 -8 7050 6866 5 1183 21 71 0 0 chr4 78451011 78451053 -77179067 + AT_rich Low_complexity Low_complexity 1 42 0 5 1183 36 40 0 0 chr4 78451496 78451546 -77178574 + AT_rich Low_complexity Low_complexity 1 50 0 5 1183 42 0 0 0 chr4 78451718 78451760 -77178360 + AT_rich Low_complexity Low_complexity 1 42 0 5 1183 262 385 93 9 chr4 78452203 78452418 -77177702 + MLT1C LTR MaLR 233 465 -2 5 1183 361 200 156 28 chr4 78453565 78453745 -77176375 - Lx9 LINE L1 -1 7643 7441 5 1183 1439 270 39 11 chr4 78453746 78454185 -77175935 + Lx9 LINE L1 6988 7438 -206 5 1183 441 0 0 0 chr4 78454299 78454348 -77175772 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1183 225 0 0 0 chr4 78454348 78454372 -77175748 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1183 25 65 0 0 chr4 78454753 78454799 -77175321 + AT_rich Low_complexity Low_complexity 1 46 0 5 1183 210 250 0 0 chr4 78455015 78455075 -77175045 + (TAA)n Simple_repeat Simple_repeat 2 61 0 5 1183 1286 261 99 16 chr4 78455852 78456237 -77173883 + MTD LTR MaLR 1 417 -2 5 1183 1651 100 4 0 chr4 78456328 78456558 -77173562 + L1_Mus2 LINE L1 6331 6561 -5 5 1183 180 111 0 0 chr4 78456564 78456591 -77173529 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1183 2449 67 0 24 chr4 78456711 78457046 -77173074 - L1_Mus1 LINE L1 -1 6566 6240 5 1183 1086 103 0 7 chr4 78457331 78457478 -77172642 - B1_Mus1 SINE Alu 0 148 3 5 1183 387 0 0 0 chr4 78457844 78457887 -77172233 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1183 342 318 108 0 chr4 78458157 78458286 -77171834 + RSINE1 SINE B4 4 146 -19 5 1183 2784 61 0 0 chr4 78458307 78458651 -77171469 - ORR1A1 LTR MaLR -2 344 1 5 1183 249 366 98 5 chr4 78458748 78458932 -77171188 + Lx8 LINE L1 6999 7199 -274 5 1183 1195 247 88 15 chr4 78458963 78459361 -77170759 + Lx9 LINE L1 7048 7474 -170 5 1183 774 114 26 0 chr4 78459509 78459623 -77170497 - L1_Mus1 LINE L1 -468 6099 5983 5 1183 3569 66 7 0 chr4 78459623 78460079 -77170041 + L1_Mus1 LINE L1 6109 6567 0 5 1183 8785 131 11 40 chr4 78460453 78462535 -77167585 + L1VL4 LINE L1 342 2375 -1184 5 1183 2629 204 35 2 chr4 78462547 78463116 -77167004 + L1_Mm LINE L1 4501 5088 -795 5 1183 228 111 0 0 chr4 78466326 78466362 -77163758 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 5 1183 22 0 0 0 chr4 78466364 78466386 -77163734 + AT_rich Low_complexity Low_complexity 1 22 0 5 1183 6158 70 0 7 chr4 78466519 78467329 -77162791 - L1Md_F2 LINE L1 -10 6572 5769 5 1183 350 21 21 0 chr4 78467419 78467466 -77162654 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 5 1183 384 22 0 0 chr4 78467469 78467514 -77162606 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1183 225 132 0 0 chr4 78467756 78467794 -77162326 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1183 978 107 7 0 chr4 78467795 78467935 -77162185 - B1_Mus2 SINE Alu -6 141 1 5 1183 1153 171 27 14 chr4 78468870 78469089 -77161031 - Lx2 LINE L1 0 6997 6776 5 1183 6310 170 8 2 chr4 78469090 78470696 -77159424 - Lx2 LINE L1 -354 6643 5029 5 1183 1271 139 15 0 chr4 78470694 78470895 -77159225 + L1VL4 LINE L1 202 405 -5897 5 1183 30 0 0 0 chr4 78470995 78471025 -77159095 + AT_rich Low_complexity Low_complexity 1 30 0 5 1183 1031 144 103 5 chr4 78471040 78471235 -77158885 - Lx LINE L1 -57 6952 6739 5 1183 3523 110 13 9 chr4 78471234 78471783 -77158337 - L1_Mur1 LINE L1 -718 5168 4618 5 1183 261 0 0 0 chr4 78472692 78472721 -77157399 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1183 483 18 0 0 chr4 78472722 78472778 -77157342 + (CTATA)n Simple_repeat Simple_repeat 2 57 0 5 1183 216 0 0 0 chr4 78473537 78473561 -77156559 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1183 2572 184 16 18 chr4 78474945 78475453 -77154667 - Lx LINE L1 -6 6648 6142 5 1183 3483 165 36 4 chr4 78475453 78476291 -77153829 + Lx LINE L1 5139 6010 -644 5 1183 3706 84 0 34 chr4 78476704 78477256 -77152864 - L1_Mm LINE L1 -3417 2466 1934 5 1183 489 52 26 13 chr4 78477560 78477638 -77152482 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1183 2275 103 3 6 chr4 78477681 78478014 -77152106 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 1183 14918 48 4 3 chr4 78478016 78479838 -77150282 - IAPEz-int LTR ERVK -2 6479 4656 6 1183 1900 84 12 0 chr4 78479837 78480088 -77150032 - IAPEz-int LTR ERVK -5183 2497 2244 6 1183 988 42 0 0 chr4 78480083 78480202 -77149918 - IAPEz-int LTR ERVK -5004 1477 1359 6 1183 3594 83 35 39 chr4 78480202 78481005 -77149115 - IAPEz-int LTR ERVK -5819 662 6 6 1183 2252 99 3 6 chr4 78481005 78481331 -77148789 - IAPLTR1a_Mm LTR ERVK -5 332 8 6 1183 378 0 0 0 chr4 78481332 78481374 -77148746 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1183 270 0 0 0 chr4 78481374 78481403 -77148717 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1183 741 290 37 77 chr4 78481439 78481840 -77148280 + MT2A LTR ERVL 1 543 -58 6 1183 708 214 0 0 chr4 78481852 78482020 -77148100 + (TA)n Simple_repeat Simple_repeat 2 169 0 6 1183 621 292 37 30 chr4 78482073 78482401 -77147719 - Lx9 LINE L1 -42 7602 7273 6 1183 247 379 77 26 chr4 78482501 78482696 -77147424 + MER58A DNA MER1_type 3 207 -17 6 1183 323 354 26 0 chr4 78482821 78482934 -77147186 + B3A SINE B2 2 117 -81 6 1183 3135 158 2 35 chr4 78482974 78483520 -77146600 + Lx3C LINE L1 6442 6969 -7 6 1183 331 346 36 72 chr4 78484968 78485005 -77145115 - B3 SINE B2 -25 191 163 6 1183 408 20 0 0 chr4 78485005 78485054 -77145066 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1183 414 346 36 72 chr4 78485054 78485209 -77144911 - B3A SINE B2 -35 163 6 6 1183 1208 268 86 35 chr4 78486655 78487088 -77143032 - Lx8 LINE L1 -5 7468 7014 6 1183 429 411 92 32 chr4 78487112 78487524 -77142596 + MTE-int LTR MaLR 691 1127 -453 6 1183 334 332 85 21 chr4 78488408 78488596 -77141524 + MTE-int LTR MaLR 1339 1538 -42 6 1183 229 194 164 0 chr4 78488961 78489028 -77141092 + MTE2a LTR MaLR 290 367 -12 6 1183 235 232 14 28 chr4 78489210 78489281 -77140839 + L1M1 LINE L1 5528 5597 -703 6 1183 7133 98 4 0 chr4 78489413 78490580 -77139540 + L1_Mus1 LINE L1 5396 6566 -1 6 1183 461 301 120 38 chr4 78490837 78491187 -77138933 + L1MA4 LINE L1 3340 3718 -2428 6 1183 246 111 0 0 chr4 78491228 78491264 -77138856 + U2 snRNA snRNA 1 36 -152 6 1183 343 281 174 5 chr4 78491276 78491494 -77138626 + L1MA4 LINE L1 3983 4237 -1903 6 1183 258 299 10 10 chr4 78491762 78491860 -77138260 + L1MA4 LINE L1 4578 4675 -1468 6 1183 295 313 94 62 chr4 78492002 78492077 -77138043 + L1MA4 LINE L1 4755 4836 -1307 6 1183 486 0 0 0 chr4 78492077 78492131 -77137989 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1183 333 0 0 0 chr4 78492131 78492167 -77137953 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1183 295 313 94 62 chr4 78492167 78492706 -77137414 + L1MA4 LINE L1 4837 5389 -754 6 1183 267 368 87 13 chr4 78492739 78493119 -77137001 + L1MA4 LINE L1 5527 5934 -366 6 1183 21 36 0 0 chr4 78493279 78493307 -77136813 + AT_rich Low_complexity Low_complexity 1 28 0 6 1183 1647 194 101 0 chr4 78493373 78493719 -77136401 + ORR1B1 LTR MaLR 6 386 -8 6 1183 410 0 20 0 chr4 78493719 78493769 -77136351 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1183 195 129 0 0 chr4 78493771 78493802 -77136318 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1183 389 36 18 0 chr4 78493803 78493858 -77136262 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 6 1183 336 327 64 0 chr4 78494209 78494319 -77135801 + B3 SINE B2 1 117 -99 6 1183 406 79 44 11 chr4 78494383 78494473 -77135647 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1183 3343 35 2 5 chr4 78494879 78495276 -77134844 + MTA_Mm LTR MaLR 1 396 0 6 1183 8111 60 27 5 chr4 78495276 78496350 -77133770 + MTA_Mm-int LTR MaLR 1 1098 0 6 1183 3046 54 10 5 chr4 78496350 78496742 -77133378 + MTA_Mm LTR MaLR 1 394 -2 6 1183 6974 100 7 1 chr4 78496929 78497900 -77132220 - L1_Mus1 LINE L1 0 6567 5591 6 1183 2552 68 0 3 chr4 78497898 78498225 -77131895 + L1_Mus1 LINE L1 5265 5590 -293 6 1183 186 43 0 0 chr4 78498390 78498413 -77131707 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1183 6511 178 24 7 chr4 78498553 78499857 -77130263 - L1_Mur2 LINE L1 -1255 4622 3297 6 1183 1004 48 47 20 chr4 78499851 78500000 -77130120 - L1Md_A LINE L1 -1 6581 6429 6 1183 34706 73 2 4 chr4 78500000 78506221 -77123899 - L1Md_F2 LINE L1 -153 6432 128 1 1183 12000 122 30 25 chr4 78506234 78508943 -77121177 - L1VL2 LINE L1 -607 3008 286 2 1183 245 289 16 40 chr4 78509723 78509849 -77120271 - Lx8 LINE L1 -1552 5921 5799 3 1183 21 0 0 0 chr4 78509980 78510001 -77120119 + AT_rich Low_complexity Low_complexity 1 21 0 4 1183 5100 62 11 3 chr4 78510076 78510736 -77119384 - L1Md_F2 LINE L1 -12 6570 5906 5 1183 375 23 0 0 chr4 78511314 78511358 -77118762 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1183 213 39 0 0 chr4 78511371 78511397 -77118723 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 1183 446 88 15 0 chr4 78511401 78511469 -77118651 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1184 1016 198 9 35 chr4 78512686 78512916 -77117204 - URR1B DNA MER1_type 0 225 2 9 1184 548 329 55 51 chr4 78513215 78513538 -77116582 + ORR1E LTR MaLR 28 375 -4 1 1184 2671 362 45 59 chr4 78513551 78515102 -77115018 + ORR1E-int LTR MaLR 2 1530 -50 1 1184 281 289 26 0 chr4 78515104 78515180 -77114940 + ORR1E LTR MaLR 9 86 -273 1 1184 4599 251 47 28 chr4 78515194 78516920 -77113200 - Lx5 LINE L1 -7 7043 5267 1 1184 7106 173 15 6 chr4 78516942 78518264 -77111856 - Lx3C LINE L1 -26 5851 4518 1 1184 624 214 65 0 chr4 78518264 78518418 -77111702 + Lx3C LINE L1 5855 6018 -958 1 1184 1413 185 4 7 chr4 78518826 78519103 -77111017 + L1_Mur2 LINE L1 2415 2690 -3187 1 1184 1719 265 97 14 chr4 78519099 78519288 -77110832 + Lx2B LINE L1 6440 6662 -338 1 1184 2711 95 15 5 chr4 78519288 78519680 -77110440 - MTA_Mm LTR MaLR 0 396 1 1 1184 1719 265 97 14 chr4 78519680 78520006 -77110114 + Lx2B LINE L1 6663 6998 -2 1 1184 2794 209 50 4 chr4 78520055 78520458 -77109662 - Lx5 LINE L1 -594 5283 4864 1 1184 444 37 0 0 chr4 78520458 78520512 -77109608 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1 1184 2794 209 50 4 chr4 78520512 78520784 -77109336 - Lx5 LINE L1 -1014 4863 4577 1 1184 1201 236 24 19 chr4 78520779 78521155 -77108965 + L1_Mur2 LINE L1 2882 3259 -2621 1 1184 3697 200 60 13 chr4 78521162 78521807 -77108313 + L1_Mur2 LINE L1 3625 4277 -1600 1 1184 360 0 0 0 chr4 78521807 78521847 -77108273 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1184 3697 200 60 13 chr4 78521847 78522131 -77107989 + L1_Mur2 LINE L1 4278 4597 -1280 1 1184 264 340 118 53 chr4 78522214 78522366 -77107754 + ORR1E LTR MaLR 201 362 -17 1 1184 1030 72 7 0 chr4 78523650 78523788 -77106332 - B1_Mm SINE Alu 0 147 9 2 1184 519 215 46 112 chr4 78523652 78523804 -77106316 - B4 SINE B4 -69 223 82 2 1184 902 143 76 23 chr4 78524514 78524686 -77105434 + Lx3C LINE L1 6787 6967 -9 2 1184 29 90 0 0 chr4 78524770 78524848 -77105272 + AT_rich Low_complexity Low_complexity 1 78 0 2 1184 449 47 0 15 chr4 78524976 78525041 -77105079 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1184 286 372 139 25 chr4 78525041 78525322 -77104798 - Lx8 LINE L1 -623 6850 6538 2 1184 225 0 0 0 chr4 78525323 78525348 -77104772 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1184 689 214 82 6 chr4 78525427 78525610 -77104510 + L1_Rod LINE L1 5602 5798 -49 2 1184 6498 34 0 0 chr4 78525875 78526642 -77103478 - L1Md_T LINE L1 0 6582 5816 2 1184 10057 16 1 0 chr4 78526642 78527797 -77102323 + L1Md_T LINE L1 4665 5820 -63 2 1184 252 0 0 0 chr4 78528122 78528150 -77101970 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1184 1017 122 0 0 chr4 78528150 78528298 -77101822 - B1_Mus1 SINE Alu 0 148 1 3 1184 1934 212 121 0 chr4 78528307 78528755 -77101365 - Lx2 LINE L1 0 6997 6496 3 1184 441 0 0 0 chr4 78529619 78529668 -77100452 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1184 8049 152 29 24 chr4 78530920 78532321 -77097799 + Lx2 LINE L1 5590 6996 -1 3 1184 777 351 11 38 chr4 78532860 78533227 -77096893 + Lx8 LINE L1 6969 7325 -148 3 1184 28 0 0 0 chr4 78533330 78533358 -77096762 + AT_rich Low_complexity Low_complexity 1 28 0 3 1184 914 62 131 0 chr4 78533360 78533490 -77096630 + B1_Mus1 SINE Alu 2 148 0 3 1184 448 308 8 112 chr4 78533722 78533963 -77096157 - Lx2B LINE L1 -11 6989 6774 3 1184 6189 180 52 29 chr4 78533960 78535272 -77094848 - Lx2B LINE L1 -500 6500 5143 3 1184 252 0 0 0 chr4 78535272 78535300 -77094820 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 1184 6189 176 16 26 chr4 78535300 78535750 -77094370 - Lx2B LINE L1 -735 5142 4684 3 1184 3408 195 47 50 chr4 78536295 78537173 -77092947 + Lx LINE L1 5778 6652 -2 3 1184 196 53 26 26 chr4 78537281 78537320 -77092800 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 4 1184 451 302 83 31 chr4 78537344 78538027 -77092093 - L1MC LINE L1 -2624 3522 2804 4 1184 26 0 0 0 chr4 78539662 78539688 -77090432 + AT_rich Low_complexity Low_complexity 1 26 0 4 1184 2358 94 0 6 chr4 78539845 78540176 -77089944 - L1_Mm LINE L1 -781 5102 4774 4 1184 2793 94 20 5 chr4 78540176 78540571 -77089549 + L1_Mus1 LINE L1 6165 6565 -2 4 1184 232 321 42 35 chr4 78540798 78540940 -77089180 - L1MC LINE L1 -3600 2546 2404 4 1184 630 333 15 15 chr4 78541983 78542181 -77087939 + B3 SINE B2 9 206 -10 4 1184 491 133 99 54 chr4 78542192 78542303 -77087817 + PB1D9 SINE Alu 5 120 0 4 1184 5121 38 0 0 chr4 78542697 78543306 -77086814 + L1Md_T LINE L1 5973 6581 -1 4 1184 236 172 0 17 chr4 78543754 78543813 -77086307 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1184 1287 68 0 0 chr4 78543873 78544035 -77086085 - L1_Mus1 LINE L1 -344 6223 6062 4 1184 2498 73 15 0 chr4 78544037 78544364 -77085756 + L1_Mus1 LINE L1 6226 6557 -10 4 1184 432 0 0 0 chr4 78544364 78544412 -77085708 + (TAA)n Simple_repeat Simple_repeat 1 48 0 5 1184 297 0 0 0 chr4 78544549 78544582 -77085538 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1184 25 0 0 0 chr4 78544942 78544967 -77085153 + AT_rich Low_complexity Low_complexity 1 25 0 5 1184 1470 274 149 75 chr4 78546860 78547504 -77082616 - Lx6 LINE L1 -27 7433 6742 5 1184 327 104 0 0 chr4 78547507 78547555 -77082565 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 1184 705 324 44 0 chr4 78547633 78547858 -77082262 + Lx5 LINE L1 6170 6404 -646 5 1184 827 343 88 14 chr4 78547870 78548453 -77081667 - Lx8 LINE L1 -135 7338 6713 5 1184 410 321 56 62 chr4 78548492 78548671 -77081449 - B3A SINE B2 -5 193 16 5 1184 1611 164 29 92 chr4 78549179 78549468 -77080652 + ORR1A2 LTR MaLR 1 278 -49 5 1184 1334 162 8 0 chr4 78549468 78549703 -77080417 + Lx LINE L1 6412 6648 -6 5 1184 1611 164 29 92 chr4 78549703 78549762 -77080358 + ORR1A2 LTR MaLR 279 327 0 5 1184 22 0 0 0 chr4 78550047 78550069 -77080051 + AT_rich Low_complexity Low_complexity 1 22 0 6 1184 846 299 28 81 chr4 78552444 78552804 -77077316 - MTE2b LTR MaLR -20 359 19 6 1184 269 308 112 0 chr4 78552906 78553049 -77077071 + L1M2 LINE L1 5406 5564 -736 6 1184 251 130 19 0 chr4 78553125 78553179 -77076941 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 6 1184 354 267 18 54 chr4 78553213 78553324 -77076796 - MTE2b LTR MaLR -254 125 19 6 1184 250 265 77 62 chr4 78553366 78553575 -77076545 + L1M2 LINE L1 5675 5886 -411 6 1184 3225 31 23 0 chr4 78553609 78553996 -77076124 - MTA_Mm LTR MaLR 0 396 1 6 1184 319 247 0 24 chr4 78554041 78554124 -77075996 - L1MEc LINE L1 -5215 1185 1105 6 1184 361 304 29 29 chr4 78554356 78554495 -77075625 - B1_Mur1 SINE Alu -1 148 10 6 1184 332 246 137 16 chr4 78555090 78555214 -77074906 + Lx9 LINE L1 5808 5946 -1698 6 1184 557 236 160 17 chr4 78555197 78555378 -77074742 + Lx9 LINE L1 6960 7166 -478 6 1184 4786 244 59 27 chr4 78555362 78556674 -77073446 + Lx5 LINE L1 5663 6973 -3 6 1184 551 233 60 0 chr4 78556714 78556847 -77073273 + L1_Mur3 LINE L1 5087 5227 -653 7 1184 5612 100 5 1 chr4 78557320 78558103 -77072017 - L1_Mus2 LINE L1 -194 6372 5587 7 1184 1005 65 0 7 chr4 78558121 78558261 -77071859 + L1_Mus2 LINE L1 6428 6566 0 7 1184 28 102 0 0 chr4 78558371 78558469 -77071651 + AT_rich Low_complexity Low_complexity 1 98 0 7 1184 27 29 0 0 chr4 78559048 78559082 -77071038 + AT_rich Low_complexity Low_complexity 1 34 0 7 1184 878 105 13 7 chr4 78559183 78559337 -77070783 - L1_Mus3 LINE L1 0 6638 6484 7 1184 1157 78 0 0 chr4 78559337 78559491 -77070629 + L1_Mus3 LINE L1 6165 6318 -320 7 1184 504 305 79 8 chr4 78560664 78560905 -77069215 - L1MC1 LINE L1 -22 6311 6054 7 1184 558 58 23 11 chr4 78560952 78561040 -77069080 + (TA)n Simple_repeat Simple_repeat 1 89 0 7 1184 241 293 112 52 chr4 78561047 78561432 -77068688 - L1MC1 LINE L1 -485 5848 5433 7 1184 323 121 17 0 chr4 78561645 78561703 -77068417 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 7 1184 462 18 0 0 chr4 78562547 78562602 -77067518 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1184 27 29 0 0 chr4 78563113 78563147 -77066973 + AT_rich Low_complexity Low_complexity 1 34 0 7 1184 182 116 23 0 chr4 78564085 78564128 -77065992 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 8 1184 5925 221 36 11 chr4 78564752 78565627 -77064493 - Lx2B LINE L1 -9 6991 6097 8 1184 3175 63 0 2 chr4 78565627 78566024 -77064096 + MTA_Mm LTR MaLR 1 396 0 8 1184 5925 221 36 11 chr4 78566024 78566519 -77063601 - Lx2B LINE L1 -904 6096 5587 8 1184 6651 114 22 16 chr4 78566557 78567596 -77062524 - L1_Mus3 LINE L1 -7 6631 5587 8 1184 7976 141 5 14 chr4 78567597 78568933 -77061187 + L1_Mus3 LINE L1 4262 5586 -297 8 1184 1662 156 148 3 chr4 78568926 78569292 -77060828 - Lx2B LINE L1 -305 5572 5154 8 1184 22 70 0 0 chr4 78569298 78569341 -77060779 + AT_rich Low_complexity Low_complexity 1 43 0 8 1184 3082 66 8 0 chr4 78569555 78569951 -77060169 + MTB LTR MaLR 1 399 -1 8 1184 425 356 47 28 chr4 78571983 78572197 -77057923 + MLT1C LTR MaLR 222 439 -28 8 1184 23 68 0 0 chr4 78573518 78573562 -77056558 + AT_rich Low_complexity Low_complexity 1 44 0 8 1184 369 0 0 0 chr4 78573573 78573614 -77056506 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1184 378 0 0 0 chr4 78573615 78573657 -77056463 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1184 1574 32 5 0 chr4 78574127 78574313 -77055807 + B2_Mm1t SINE B2 1 187 -6 9 1184 734 338 93 24 chr4 78575537 78576123 -77053997 - Lx7 LINE L1 -206 7267 6617 9 1184 1887 181 2 187 chr4 78576155 78576376 -77053744 - L1_Mm LINE L1 -419 5458 5317 9 1184 8975 5 0 0 chr4 78576376 78577372 -77052748 + L1Md_T LINE L1 5587 6582 0 9 1184 2888 71 0 20 chr4 78577372 78577782 -77052338 - L1_Mm LINE L1 -561 5322 4944 9 1184 4110 92 2 5 chr4 78577786 78578363 -77051757 - L1Md_F2 LINE L1 -83 6499 5925 9 1184 5335 131 26 25 chr4 78578951 78579844 -77050276 - L1_Mus3 LINE L1 0 6638 5745 9 1184 1217 199 14 48 chr4 78579860 78580150 -77049970 + L1_Mm LINE L1 5160 5439 -444 9 1184 938 274 98 105 chr4 78580146 78580496 -77049624 - L1_Mur3 LINE L1 -920 4960 4604 9 1184 3566 72 21 2 chr4 78580496 78580973 -77049147 - L1_Mus1 LINE L1 0 6567 6082 9 1184 938 276 89 93 chr4 78580973 78581733 -77048387 - L1_Mur3 LINE L1 -1277 4603 3736 9 1184 461 17 17 0 chr4 78582199 78582257 -77047863 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 1184 7657 140 24 2 chr4 78582267 78583506 -77046614 - Lx2 LINE L1 -2 6995 5730 1 1184 2189 240 23 70 chr4 78583506 78584195 -77045925 + L1_Mur1 LINE L1 4578 5234 -652 1 1184 393 81 0 0 chr4 78584260 78584322 -77045798 + (TTAG)n Simple_repeat Simple_repeat 3 64 0 1 1184 504 268 173 8 chr4 78584340 78584600 -77045520 - L1_Mur3 LINE L1 -3500 2380 2078 9 1184 509 366 18 60 chr4 78585264 78585546 -77044574 + RMER15 LTR ERVL 305 574 -1 1 1184 23 0 0 0 chr4 78586170 78586193 -77043927 + AT_rich Low_complexity Low_complexity 1 23 0 1 1184 457 364 82 82 chr4 78586269 78586661 -77043459 - MTD LTR MaLR -14 405 14 1 1184 225 0 0 0 chr4 78587921 78587946 -77042174 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1184 252 0 0 0 chr4 78589258 78589286 -77040834 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1 1184 668 170 7 0 chr4 78590161 78590296 -77039824 + CT-rich Low_complexity Low_complexity 2 137 0 1 1184 708 118 0 0 chr4 78590892 78591002 -77039118 + MTB_Mm LTR MaLR 1 110 -297 1 1184 6824 104 13 15 chr4 78591024 78592357 -77037763 - L1_Mus2 LINE L1 0 6566 5245 1 1184 513 0 0 0 chr4 78592357 78592414 -77037706 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1184 4687 117 31 1 chr4 78592414 78592486 -77037634 - L1_Mus2 LINE L1 -639 5244 5154 1 1184 1624 143 60 7 chr4 78592486 78592768 -77037352 + MTB_Mm LTR MaLR 111 407 0 1 1184 264 358 28 0 chr4 78593386 78593495 -77036625 + MLT1C LTR MaLR 334 445 -22 1 1184 436 221 86 9 chr4 78593786 78593891 -77036229 - URR1B DNA MER1_type 0 225 113 1 1184 1359 202 131 31 chr4 78594247 78594569 -77035551 - L1_Mur2 LINE L1 -901 4976 4636 1 1184 252 0 0 0 chr4 78594569 78594597 -77035523 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1184 1359 202 131 31 chr4 78594597 78594657 -77035463 - L1_Mur2 LINE L1 -1242 4635 4558 1 1184 189 229 0 0 chr4 78594703 78594751 -77035369 + GA-rich Low_complexity Low_complexity 3 50 0 1 1184 1448 187 6 109 chr4 78594858 78595224 -77034896 + ORR1A4 LTR MaLR 2 329 0 1 1184 1114 95 0 0 chr4 78595468 78595616 -77034504 + B1_Mus1 SINE Alu 1 148 0 1 1184 292 130 26 13 chr4 78595616 78595694 -77034426 + A-rich Low_complexity Low_complexity 6 84 0 1 1184 682 238 40 32 chr4 78595877 78596155 -77033965 + L1_Rod LINE L1 1481 1760 -4087 1 1184 13338 180 95 9 chr4 78596190 78596917 -77033203 + Lx3_Mus LINE L1 2751 3472 -2405 1 1184 243 0 0 0 chr4 78596917 78596944 -77033176 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1184 13338 163 78 16 chr4 78596944 78599578 -77030542 + Lx3_Mus LINE L1 3473 6377 -632 1 1184 4509 154 32 25 chr4 78599579 78600392 -77029728 - Lx3A LINE L1 -362 6619 5801 1 1184 1141 252 262 16 chr4 78600689 78601039 -77029081 + MT2A LTR ERVL 10 445 -88 1 1184 30 0 0 0 chr4 78601280 78601310 -77028810 + AT_rich Low_complexity Low_complexity 1 30 0 1 1184 2633 123 2 22 chr4 78601358 78601766 -77028354 - MTB LTR MaLR 0 400 1 1 1184 5413 151 41 50 chr4 78601768 78602874 -77027246 - MTB-int LTR MaLR -2 1096 1 1 1184 874 109 10 8 chr4 78602874 78603026 -77027094 - MTB LTR MaLR 0 421 268 1 1184 466 167 22 0 chr4 78602994 78603084 -77027036 - MTB LTR MaLR -315 92 1 1 1184 293 0 27 0 chr4 78603464 78603501 -77026619 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1184 625 386 25 29 chr4 78603593 78603868 -77026252 - B4 SINE B4 0 292 19 1 1184 22 70 0 0 chr4 78604093 78604136 -77025984 + AT_rich Low_complexity Low_complexity 1 43 0 1 1184 21 36 0 0 chr4 78604410 78604438 -77025682 + AT_rich Low_complexity Low_complexity 1 28 0 1 1184 363 37 0 0 chr4 78604514 78604568 -77025552 + L1_Mus3 LINE L1 6577 6630 -8 1 1184 31 0 0 0 chr4 78604915 78604946 -77025174 + AT_rich Low_complexity Low_complexity 1 31 0 1 1184 286 398 12 12 chr4 78605503 78605676 -77024444 - MTE2b LTR MaLR -189 190 18 1 1184 201 279 0 16 chr4 78605779 78605841 -77024279 + CT-rich Low_complexity Low_complexity 3 63 0 1 1184 3153 52 5 10 chr4 78605978 78606390 -77023730 - L1Md_F3 LINE L1 0 6584 6175 1 1184 351 0 0 0 chr4 78606390 78606429 -77023691 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1 1184 2495 43 0 0 chr4 78606991 78607290 -77022830 + L1Md_F2 LINE L1 5288 5586 -297 1 1184 7460 68 2 23 chr4 78607290 78608307 -77021813 + L1Md_F2 LINE L1 5587 6582 0 1 1184 22 35 0 0 chr4 78608314 78608343 -77021777 + AT_rich Low_complexity Low_complexity 1 29 0 1 1184 726 241 51 9 chr4 78608356 78608570 -77021550 + Lx6 LINE L1 7228 7450 -10 1 1184 2037 286 42 12 chr4 78609188 78610013 -77020107 - L1_Mur3 LINE L1 -1222 4658 3809 1 1184 266 338 0 0 chr4 78610587 78610658 -77019462 - B3A SINE B2 -112 86 16 1 1184 767 243 31 18 chr4 78610658 78610880 -77019240 - URR1A DNA MER1_type 0 226 2 1 1184 2121 267 63 0 chr4 78611116 78611749 -77018371 - RMER1B Other Other -18 1324 182 1 1184 327 25 0 0 chr4 78611966 78612006 -77018114 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1184 27 29 0 0 chr4 78612341 78612375 -77017745 + AT_rich Low_complexity Low_complexity 1 34 0 1 1184 433 342 20 7 chr4 78612868 78613015 -77017105 + B3 SINE B2 27 175 -41 1 1184 2818 99 17 0 chr4 78615071 78615483 -77014637 - BGLII LTR ERVK 0 421 3 1 1184 330 206 0 0 chr4 78615527 78615600 -77014520 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1184 198 284 0 0 chr4 78615746 78615827 -77014293 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1184 207 88 0 0 chr4 78616324 78616358 -77013762 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1184 234 0 0 0 chr4 78617373 78617399 -77012721 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1184 979 344 81 12 chr4 78617608 78618641 -77011479 + L1_Mur3 LINE L1 4373 5477 -403 1 1184 936 316 146 35 chr4 78618641 78619270 -77010850 + Lx9 LINE L1 6136 6834 -810 1 1184 1296 286 77 44 chr4 78619267 78619930 -77010190 + Lx9 LINE L1 6940 7624 -20 1 1184 6603 197 24 17 chr4 78619944 78621914 -77008206 - Lx3C LINE L1 -5 6971 4995 1 1184 29409 89 33 9 chr4 78621921 78626952 -77003168 - L1Md_F2 LINE L1 0 6582 1431 1 1184 463 187 0 0 chr4 78626961 78627052 -77003068 - L1Md_F2 LINE L1 -6044 572 482 1 1184 1835 208 28 26 chr4 78627051 78627510 -77002610 - L1VL1 LINE L1 -5962 460 1 1 1184 10789 181 26 39 chr4 78627512 78629743 -77000377 - Lx3C LINE L1 -884 4993 2793 1 1184 248 53 0 26 chr4 78629743 78629782 -77000338 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1184 10789 181 26 39 chr4 78629782 78630004 -77000116 - Lx3C LINE L1 -3085 2792 2572 1 1184 523 355 28 25 chr4 78630424 78630848 -76999272 + Lx5 LINE L1 5457 5913 -1137 1 1184 23 54 0 0 chr4 78631685 78631722 -76998398 + AT_rich Low_complexity Low_complexity 1 37 0 1 1184 22 35 0 0 chr4 78632496 78632525 -76997595 + AT_rich Low_complexity Low_complexity 1 29 0 1 1184 371 206 0 14 chr4 78632906 78632980 -76997140 + MT2A LTR ERVL 20 92 -441 1 1184 1877 226 152 14 chr4 78632980 78633488 -76996632 - Lx2B LINE L1 -13 6987 6410 1 1184 983 278 19 11 chr4 78633492 78633761 -76996359 + MT2A LTR ERVL 77 347 -186 1 1184 1108 105 77 0 chr4 78633762 78633806 -76996314 - Lx2 LINE L1 -1044 5953 5910 1 1184 361 66 16 16 chr4 78633806 78633868 -76996252 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1 1184 1108 105 77 0 chr4 78633868 78634004 -76996116 - Lx2 LINE L1 -1088 5909 5760 1 1184 4076 209 39 39 chr4 78634007 78635050 -76995070 + Lx2 LINE L1 5955 6997 0 1 1184 694 214 21 21 chr4 78635296 78635439 -76994681 + B1_Mur4 SINE Alu 1 143 -7 1 1184 228 233 31 62 chr4 78636139 78636203 -76993917 + PB1 SINE Alu 64 125 -2 1 1184 335 272 81 0 chr4 78636368 78636504 -76993616 - Lx5 LINE L1 0 7050 6904 1 1184 201 152 0 0 chr4 78636514 78636547 -76993573 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1 1184 1693 245 11 26 chr4 78636639 78637016 -76993104 - Lx5 LINE L1 -190 6860 6490 1 1184 186 128 0 0 chr4 78637411 78637450 -76992670 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1184 769 205 38 43 chr4 78638192 78638376 -76991744 + Lx5 LINE L1 6273 6455 -595 1 1184 880 227 115 26 chr4 78638370 78638596 -76991524 + Lx5 LINE L1 6805 7050 0 1 1184 26 30 0 0 chr4 78638673 78638706 -76991414 + AT_rich Low_complexity Low_complexity 1 33 0 1 1184 1130 196 66 21 chr4 78638719 78639006 -76991114 - Lx9 LINE L1 -73 7571 7272 1 1184 358 230 10 0 chr4 78639054 78639154 -76990966 - Lx9 LINE L1 -650 6994 6894 1 1184 353 336 17 17 chr4 78640291 78640406 -76989714 + PB1D10 SINE Alu 3 117 0 1 1184 1671 193 19 75 chr4 78640939 78641314 -76988806 + ORR1B1 LTR MaLR 41 394 0 1 1184 5124 114 5 3 chr4 78641634 78642397 -76987723 + L1Md_A LINE L1 442 1206 -5521 1 18 25034 71 7 3 chr4 78642364 78645842 -76984278 + L1Md_A LINE L1 993 4623 -1263 1 1185 351 145 0 0 chr4 78645858 78645941 -76984179 + (TTTA)n Simple_repeat Simple_repeat 3 85 0 1 1185 16954 44 4 2 chr4 78645942 78648066 -76982054 + L1Md_F2 LINE L1 3460 5586 -297 1 1185 7897 57 1 2 chr4 78648066 78649063 -76981057 + L1Md_F2 LINE L1 5587 6582 0 1 1185 702 24 0 0 chr4 78649299 78649383 -76980737 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1185 230 270 34 17 chr4 78649388 78649505 -76980615 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1185 1300 292 69 19 chr4 78650415 78651156 -76978964 - L1_Rod LINE L1 -366 5481 4704 1 1185 288 0 0 0 chr4 78651454 78651486 -76978634 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1185 1853 152 11 50 chr4 78651515 78651876 -76978244 - Lx LINE L1 0 6997 6651 1 1185 1303 225 26 13 chr4 78651900 78652202 -76977918 - Lx7 LINE L1 -471 7225 6920 1 1185 1395 161 74 37 chr4 78652303 78652600 -76977520 - Lx3_Mus LINE L1 -913 6096 5789 1 1185 252 0 0 0 chr4 78652602 78652630 -76977490 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1185 25 0 0 0 chr4 78652636 78652661 -76977459 + AT_rich Low_complexity Low_complexity 1 25 0 1 1185 7005 134 18 7 chr4 78652661 78654557 -76975563 - Lx LINE L1 -1 6653 4740 1 1185 5109 138 29 15 chr4 78654559 78655443 -76974677 + Lx3_Mus LINE L1 6112 7008 -1 1 1185 225 0 0 0 chr4 78655601 78655626 -76974494 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1185 813 21 0 0 chr4 78655626 78655720 -76974400 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1185 4805 200 18 16 chr4 78655720 78656044 -76974076 - Lx4A LINE L1 -80 6978 6660 1 1185 1692 108 0 0 chr4 78656044 78656284 -76973836 - L1_Mus1 LINE L1 -2 6565 6326 1 1185 4805 200 18 16 chr4 78656284 78656936 -76973184 - Lx4A LINE L1 -399 6659 6000 1 1185 8877 63 9 4 chr4 78656938 78658813 -76971307 - L1Md_F3 LINE L1 -1 6583 4700 1 1185 3441 182 50 21 chr4 78658815 78659520 -76970600 - Lx4A LINE L1 -1047 6011 5294 1 1185 1984 155 15 41 chr4 78659520 78659910 -76970210 - Lx LINE L1 0 6654 6275 1 1185 3441 189 48 11 chr4 78659910 78660049 -76970071 - Lx4A LINE L1 -584 5293 5146 1 1185 1024 276 66 10 chr4 78660046 78660689 -76969431 - L1_Rod LINE L1 -4242 1605 918 1 1185 227 306 0 0 chr4 78661397 78661459 -76968661 + CT-rich Low_complexity Low_complexity 3 64 0 1 1185 507 220 7 64 chr4 78662727 78662868 -76967252 + ORR1A3 LTR MaLR 10 142 -184 1 1185 474 100 14 0 chr4 78662828 78662898 -76967222 - 4.5SRNA scRNA scRNA -15 79 9 1 1185 868 121 0 41 chr4 78662898 78663044 -76967076 + Lx2 LINE L1 6584 6723 -274 1 1185 658 227 12 0 chr4 78663044 78663207 -76966913 + Lx2B LINE L1 6819 6983 -17 2 1185 1375 150 4 58 chr4 78663218 78663459 -76966661 + ORR1A2 LTR MaLR 92 319 -8 2 1185 21 0 0 0 chr4 78663693 78663714 -76966406 + AT_rich Low_complexity Low_complexity 1 21 0 2 1185 602 321 11 0 chr4 78664474 78664661 -76965459 + Lx6 LINE L1 6947 7135 -325 2 1185 3183 46 58 0 chr4 78664655 78665048 -76965072 - L1Md_F3 LINE L1 -149 6435 6020 2 1185 361 331 24 6 chr4 78665046 78665216 -76964904 + Lx6 LINE L1 7256 7428 -32 2 1185 1750 290 64 65 chr4 78665672 78666650 -76963470 + RMER1C Other Other 76 1170 -172 2 1185 422 169 68 0 chr4 78667144 78667262 -76962858 + GA-rich Low_complexity Low_complexity 2 127 0 2 1185 1329 292 21 32 chr4 78667262 78667694 -76962426 - RLTR14-int LTR ERV1 -4890 427 1 2 1185 1693 190 83 0 chr4 78667694 78668042 -76962078 - RLTR14 LTR ERV1 -3 379 3 2 1185 1123 109 41 10 chr4 78668084 78668278 -76961842 + L1_Mus1 LINE L1 6368 6567 0 2 1185 5569 224 148 56 chr4 78668300 78671692 -76958428 - L1_Mur3 LINE L1 -989 4888 864 2 1185 238 344 129 30 chr4 78671782 78672085 -76958035 - L1_Mur3 LINE L1 -7307 421 89 2 1185 365 338 46 37 chr4 78672285 78672503 -76957617 + MLT1B LTR MaLR 6 225 -165 2 1185 246 206 0 0 chr4 78672654 78672717 -76957403 + CT-rich Low_complexity Low_complexity 2 64 0 2 1185 23 0 0 0 chr4 78673050 78673073 -76957047 + AT_rich Low_complexity Low_complexity 1 23 0 2 1185 1426 57 10 35 chr4 78673632 78673831 -76956289 - B2_Mm2 SINE B2 -1 194 1 2 1185 267 31 0 0 chr4 78673945 78673977 -76956143 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1185 1532 243 42 7 chr4 78674200 78674607 -76955513 + MTC LTR MaLR 1 421 0 2 1185 16337 176 30 11 chr4 78674693 78677924 -76952196 - L1_Mm LINE L1 -37 5846 2554 2 1185 3853 180 8 21 chr4 78677916 78678918 -76951202 - L1VL4 LINE L1 -2409 1150 165 2 1185 665 132 31 8 chr4 78679714 78679844 -76950276 + Lx LINE L1 6518 6650 -4 2 1185 2579 315 54 16 chr4 78679877 78680791 -76949329 + Lx6 LINE L1 6301 7248 -212 2 1185 1094 254 53 78 chr4 78680822 78680917 -76949203 - RMER19C LTR ERVK 0 611 519 2 1185 5737 143 14 4 chr4 78680917 78681867 -76948253 + Lx3A LINE L1 6019 6977 -4 2 1185 1094 254 53 78 chr4 78681867 78682129 -76947991 - RMER19C LTR ERVK -93 518 263 2 1185 187 132 58 14 chr4 78682521 78682590 -76947530 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1185 198 0 0 0 chr4 78682697 78682719 -76947401 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1185 1048 336 109 16 chr4 78682945 78683697 -76946423 - Lx9 LINE L1 -456 7188 6367 2 1185 201 74 0 0 chr4 78683722 78683749 -76946371 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2 1185 1654 270 144 48 chr4 78683764 78684786 -76945334 + Lx9 LINE L1 4102 5221 -626 2 1185 388 198 0 12 chr4 78684811 78684893 -76945227 + Lx3_Mus LINE L1 5176 5256 -621 2 1185 695 154 0 8 chr4 78684897 78685015 -76945105 + B1_Mus1 SINE Alu 2 118 -30 2 1185 247 25 50 0 chr4 78685026 78685066 -76945054 + (CAA)n Simple_repeat Simple_repeat 2 43 0 2 1185 180 97 0 0 chr4 78685066 78685097 -76945023 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 2 1185 559 150 18 9 chr4 78685098 78685212 -76944908 + Lx3_Mus LINE L1 5246 5360 -517 2 1185 3759 147 13 5 chr4 78685212 78685835 -76944285 + L1_Mm LINE L1 5167 5794 -89 2 1185 2161 137 96 5 chr4 78685823 78685892 -76944228 + Lx3_Mus LINE L1 6010 6099 -910 2 1185 828 20 0 0 chr4 78685892 78685990 -76944130 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 1185 2161 137 96 5 chr4 78685990 78686325 -76943795 + Lx3_Mus LINE L1 6100 6450 -559 2 1185 1169 135 55 0 chr4 78686343 78686543 -76943577 + Lx3_Mus LINE L1 6791 7001 -8 2 1185 533 302 95 33 chr4 78686545 78686563 -76943557 + L1_Mm LINE L1 5343 5361 -763 2 1185 4915 147 29 8 chr4 78686563 78687406 -76942714 + Lx LINE L1 5789 6648 -6 2 1185 1985 167 45 2 chr4 78687406 78687779 -76942341 + L1_Mm LINE L1 5360 5756 -368 2 1185 1887 249 18 48 chr4 78687771 78688455 -76941665 + Lx9 LINE L1 5277 5986 -1658 2 1185 522 0 0 0 chr4 78688621 78688679 -76941441 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1185 608 189 0 7 chr4 78694340 78694479 -76935641 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1185 634 97 0 2 chr4 78694479 78694585 -76935535 + B2_Mm2 SINE B2 9 113 -103 2 1185 459 350 27 62 chr4 78694714 78694973 -76935147 + RMER15 LTR ERVL 2 251 -324 2 1185 6522 186 47 6 chr4 78695392 78696955 -76933165 + Lx2B LINE L1 5342 6973 -27 2 1185 522 290 87 27 chr4 78697182 78697331 -76932789 + RSINE1 SINE B4 8 165 0 2 1185 300 155 0 0 chr4 78697332 78697403 -76932717 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1185 587 283 7 0 chr4 78700175 78700313 -76929807 + B1_Mur1 SINE Alu 5 143 -6 2 1185 231 36 0 0 chr4 78700321 78700349 -76929771 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 1185 854 88 0 122 chr4 78700658 78700814 -76929306 + L1_Mus2 LINE L1 6427 6563 -3 2 1185 227 195 0 0 chr4 78702507 78702548 -76927572 + CT-rich Low_complexity Low_complexity 3 43 0 2 1185 483 312 64 24 chr4 78702761 78703089 -76927031 - L1MA7 LINE L1 -269 6724 6384 2 1185 646 212 97 27 chr4 78703108 78703365 -76926755 + Lx9 LINE L1 7368 7642 -2 2 1185 273 347 41 2 chr4 78703517 78703633 -76926487 - B1F1 SINE Alu 0 120 2 2 1185 311 287 178 35 chr4 78703654 78703968 -76926152 - L1MA7 LINE L1 -822 6171 5813 2 1185 204 222 0 22 chr4 78703970 78704016 -76926104 + CT-rich Low_complexity Low_complexity 3 47 0 2 1185 499 321 62 40 chr4 78704180 78704456 -76925664 - RLTR15 LTR ERVK -34 325 44 2 1185 527 296 94 30 chr4 78704575 78705387 -76924733 - L1MA7 LINE L1 -3142 3700 2837 2 1185 226 292 9 9 chr4 78705536 78705643 -76924477 + T-rich Low_complexity Low_complexity 2 108 0 2 1185 1433 232 47 3 chr4 78705793 78706156 -76923964 - RLTR30 LTR ERV1 0 379 1 2 1185 1192 290 85 26 chr4 78706259 78706944 -76923176 - RMER1A Other Other -411 619 20 2 1185 1886 188 75 12 chr4 78706942 78707341 -76922779 + RMER1A Other Other 597 1020 -10 2 1185 299 182 5 28 chr4 78707489 78707567 -76922553 - B2_Mm2 SINE B2 -108 108 36 2 1185 1503 193 82 16 chr4 78707574 78707890 -76922230 + Lx5 LINE L1 6714 7050 0 2 1185 337 334 92 18 chr4 78707930 78708265 -76921855 - L1MA7 LINE L1 -4256 2593 2234 2 1185 22 35 0 0 chr4 78708493 78708522 -76921598 + AT_rich Low_complexity Low_complexity 1 29 0 2 1185 1271 263 101 62 chr4 78708642 78709076 -76921044 - Lx6 LINE L1 -28 7432 6982 2 1185 15976 111 19 6 chr4 78709543 78712717 -76917403 + L1Md_F LINE L1 392 3605 -2278 2 1185 3765 114 7 3 chr4 78712710 78713290 -76916830 + L1Md_F2 LINE L1 2973 3554 -2329 2 1185 3415 103 27 2 chr4 78713281 78713806 -76916314 - L1_Mm LINE L1 -1280 4603 4066 2 1185 7849 90 15 18 chr4 78713763 78714929 -76915191 + L1Md_F2 LINE L1 3547 4709 -1174 2 1185 1708 97 4 0 chr4 78714925 78715162 -76914958 + L1Md_F2 LINE L1 5348 5585 -298 2 1185 7297 85 3 4 chr4 78715163 78716160 -76913960 + L1Md_F2 LINE L1 5587 6582 0 2 1185 360 0 0 0 chr4 78716900 78716940 -76913180 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1185 328 222 22 0 chr4 78716946 78717036 -76913084 - Lx9 LINE L1 -13 7631 7540 2 1185 492 339 41 26 chr4 78717677 78717871 -76912249 - B3A SINE B2 -9 207 11 2 1185 1056 16 0 0 chr4 78718151 78718273 -76911847 + (GAA)n Simple_repeat Simple_repeat 2 123 0 2 1185 182 293 0 47 chr4 78718977 78719020 -76911100 - MIRm SINE MIR -218 58 18 2 1185 1002 319 80 46 chr4 78719909 78720497 -76909623 + Cheshire DNA MER1_type 594 1201 -1219 2 1185 1970 260 83 17 chr4 78720573 78721210 -76908910 - Lx2B LINE L1 -4 6996 6318 2 1185 6417 194 41 15 chr4 78721242 78722574 -76907546 + Lx3C LINE L1 5589 6955 -21 2 1185 419 134 12 0 chr4 78722574 78722656 -76907464 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1185 1673 328 64 35 chr4 78722755 78723799 -76906321 + Cheshire DNA MER1_type 1346 2420 0 2 1185 22 56 0 0 chr4 78724081 78724117 -76906003 + AT_rich Low_complexity Low_complexity 1 36 0 2 1185 250 200 20 20 chr4 78724826 78724877 -76905243 + RLTR13D3 LTR ERVK 750 800 -314 2 1185 736 45 3 11 chr4 78724961 78725062 -76905058 + B1_Mm SINE Alu 44 144 -3 2 1185 351 0 0 0 chr4 78725068 78725107 -76905013 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1185 432 229 6 191 chr4 78726259 78726421 -76903699 + RLTR23 LTR ERV1 8 139 -291 2 1185 247 347 44 55 chr4 78726438 78726621 -76903499 + RLTR23 LTR ERV1 104 284 -146 2 1185 1727 333 76 31 chr4 78726624 78727650 -76902470 + Lx8 LINE L1 6328 7399 -74 2 1185 207 0 0 0 chr4 78727731 78727754 -76902366 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 1185 2356 167 91 26 chr4 78727754 78728242 -76901878 - Lx LINE L1 -29 6625 6105 2 1185 201 175 0 0 chr4 78728249 78728289 -76901831 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1185 18595 202 44 32 chr4 78728411 78733829 -76896291 - Lx2B LINE L1 -1 6999 1479 2 1185 990 106 7 0 chr4 78733829 78733971 -76896149 - B1_Mus2 SINE Alu 0 147 5 2 1185 18595 198 42 35 chr4 78733971 78734205 -76895915 - Lx2B LINE L1 -4408 1478 1261 2 1185 371 21 21 0 chr4 78734205 78734253 -76895867 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1185 903 162 0 7 chr4 78734255 78734404 -76895716 - B1_Mus1 SINE Alu 0 148 1 2 1185 18595 207 6 35 chr4 78734404 78734805 -76895315 - Lx2B LINE L1 -5724 1260 866 2 1185 236 238 9 0 chr4 78735536 78735641 -76894479 + CT-rich Low_complexity Low_complexity 2 107 0 2 1185 618 350 31 5 chr4 78736886 78737110 -76893010 - ORR1D2 LTR MaLR -14 356 127 2 1185 302 143 0 0 chr4 78738327 78738376 -76891744 + B1_Mur2 SINE Alu 92 140 -9 2 1185 605 25 13 0 chr4 78738376 78738455 -76891665 + (CAAAC)n Simple_repeat Simple_repeat 2 81 0 2 1185 775 162 87 56 chr4 78738550 78738746 -76891374 - RMER6C LTR ERVK 0 690 489 2 1185 334 242 11 0 chr4 78738764 78738859 -76891261 + (AACTG)n Simple_repeat Simple_repeat 2 97 0 2 1185 537 110 0 0 chr4 78739231 78739313 -76890807 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1185 705 349 70 4 chr4 78739800 78740073 -76890047 - MTE2b LTR MaLR -14 365 75 2 1185 260 260 14 14 chr4 78740154 78740228 -76889892 - MTE2b LTR MaLR -303 76 3 2 1185 429 235 181 9 chr4 78740285 78740401 -76889719 + MTE-int LTR MaLR 1191 1326 -254 2 1185 353 227 113 0 chr4 78740401 78740498 -76889622 - ORR1D1 LTR MaLR 0 374 267 2 1185 423 0 0 0 chr4 78740586 78740633 -76889487 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1185 325 316 82 0 chr4 78740649 78740747 -76889373 - RLTR22_Mus LTR ERVK 0 1322 1217 2 1185 2641 277 77 106 chr4 78740941 78742632 -76887488 - RLTR22_Mus LTR ERVK -242 1566 1 2 1185 407 238 9 56 chr4 78742632 78742739 -76887381 - ORR1D1 LTR MaLR -222 152 51 2 1185 272 208 0 0 chr4 78742990 78743038 -76887082 + MTE2b LTR MaLR 3 50 -329 2 1185 1346 357 20 81 chr4 78743054 78743377 -76886743 - MTEb-int LTR MaLR -792 788 481 2 1185 2774 111 28 5 chr4 78743377 78743810 -76886310 - L1_Mus4 LINE L1 0 6636 6194 2 1185 1346 357 20 81 chr4 78743810 78744298 -76885822 - MTEb-int LTR MaLR -1100 480 27 2 1185 1040 325 13 35 chr4 78744322 78744613 -76885507 - MTEb LTR MaLR 0 379 91 2 1185 207 0 0 0 chr4 78744613 78744636 -76885484 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1185 1040 325 13 35 chr4 78744636 78744720 -76885400 - MTEb LTR MaLR -289 90 12 2 1185 1662 259 51 52 chr4 78745031 78745564 -76884556 - Lx4B LINE L1 -6 7052 6521 3 1185 1599 201 90 3 chr4 78745566 78745920 -76884200 + Lx4B LINE L1 5767 6151 -907 3 1185 7776 66 0 5 chr4 78745919 78746935 -76883185 + L1Md_F2 LINE L1 4576 5586 -297 3 1185 7985 52 2 2 chr4 78746935 78747931 -76882189 + L1Md_F2 LINE L1 5587 6582 0 3 1185 194 0 39 0 chr4 78748203 78748229 -76881891 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1185 223 254 0 63 chr4 78748491 78748554 -76881566 + PB1D9 SINE Alu 2 60 -60 3 1185 1512 239 31 26 chr4 78749154 78749540 -76880580 + Lx4B LINE L1 6139 6526 -532 3 1185 778 273 194 3 chr4 78750449 78750726 -76879394 + Lx9 LINE L1 6630 6954 -690 3 1185 630 39 0 0 chr4 78750726 78750803 -76879317 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 3 1185 778 256 115 0 chr4 78750803 78751016 -76879104 + Lx9 LINE L1 6955 7197 -447 3 1185 2913 93 2 10 chr4 78751076 78751479 -76878641 - MTB LTR MaLR 0 400 1 3 1185 736 356 97 55 chr4 78751891 78752975 -76877145 - Lx7 LINE L1 -115 7358 6230 3 1185 257 377 107 30 chr4 78753222 78753419 -76876701 - B3 SINE B2 -1 215 4 3 1185 1005 277 34 32 chr4 78753505 78754002 -76876118 - Lx7 LINE L1 -1777 5919 5418 3 1185 24 0 0 0 chr4 78754019 78754043 -76876077 + AT_rich Low_complexity Low_complexity 1 24 0 3 1185 4522 83 0 2 chr4 78754045 78754634 -76875486 - L1_Mus1 LINE L1 -3 6564 5977 3 1185 924 63 0 0 chr4 78754639 78754766 -76875354 + MusHAL1 LINE L1 474 600 -2112 3 1185 465 256 7 8 chr4 78754775 78754910 -76875210 + ORR1D1 LTR MaLR 41 183 -195 3 1185 1322 77 10 5 chr4 78754910 78755106 -76875014 - L1_Mur1 LINE L1 -1564 4322 4126 3 1185 6423 121 34 7 chr4 78755106 78756121 -76873999 + Lx3_Mus LINE L1 5968 7009 0 3 1185 267 41 40 20 chr4 78756149 78756199 -76873921 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 3 1185 385 267 91 10 chr4 78756216 78756385 -76873735 + ORR1D1 LTR MaLR 193 377 -2 3 1185 4163 269 54 51 chr4 78756390 78757537 -76872583 + ORR1D1-int LTR MaLR 5 1139 -231 3 1185 904 122 16 58 chr4 78757537 78757728 -76872392 - L1_Mus4 LINE L1 -5 6631 6449 3 1185 4163 269 54 51 chr4 78757728 78757941 -76872179 + ORR1D1-int LTR MaLR 1140 1369 -1 3 1185 559 330 80 54 chr4 78757942 78758166 -76871954 + ORR1D1 LTR MaLR 1 230 -144 3 1185 250 242 61 53 chr4 78758326 78758457 -76871663 - L1_Rod LINE L1 -562 5285 5154 3 1185 270 0 0 0 chr4 78758517 78758547 -76871573 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1185 369 0 0 0 chr4 78758575 78758616 -76871504 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1185 473 279 61 31 chr4 78758627 78758823 -76871297 - Lx7 LINE L1 -854 5026 4825 3 1185 544 317 97 20 chr4 78758935 78759276 -76870844 - ORR1D2 LTR MaLR -1 369 3 3 1185 216 170 0 0 chr4 78761365 78761418 -76868702 + (CCA)n Simple_repeat Simple_repeat 3 55 0 3 1185 2814 142 15 76 chr4 78761753 78762294 -76867826 + Lx3B LINE L1 6466 6973 0 3 1185 1971 137 63 0 chr4 78762451 78762801 -76867319 + Lx3A LINE L1 5798 6169 -812 3 1185 30 45 0 0 chr4 78764242 78764286 -76865834 + AT_rich Low_complexity Low_complexity 1 44 0 3 1185 1009 164 0 11 chr4 78764371 78764562 -76865558 - Lx LINE L1 0 6654 6466 3 1185 2804 161 56 19 chr4 78764568 78765087 -76865033 - RLTR13C1 LTR ERVK -12 971 434 3 1185 464 297 203 23 chr4 78766671 78766888 -76863232 - Lx7 LINE L1 -1014 6682 6427 3 1185 575 243 28 0 chr4 78766920 78767097 -76863023 + L1_Mur3 LINE L1 5211 5392 -488 3 1185 317 308 143 30 chr4 78767382 78767683 -76862437 - L1M3 LINE L1 -593 5719 5385 3 1185 16229 91 272 8 chr4 78767690 78772328 -76857792 - L1Md_F2 LINE L1 0 6582 401 3 1185 340 300 100 36 chr4 78772780 78772876 -76857244 - L1M3 LINE L1 -1315 4828 4733 3 1185 2399 174 44 9 chr4 78772876 78773204 -76856916 + Lx2 LINE L1 6522 6846 -151 3 1185 189 0 0 0 chr4 78773204 78773225 -76856895 + (CTAGGG)n Simple_repeat Simple_repeat 5 25 0 3 1185 2399 174 44 9 chr4 78773225 78773354 -76856766 + Lx2 LINE L1 6847 6994 -3 3 1185 340 300 100 36 chr4 78773354 78773807 -76856313 - L1M3 LINE L1 -1411 4732 4244 3 1185 886 239 24 14 chr4 78773853 78774065 -76856055 + Lx5 LINE L1 6784 6997 -53 3 1185 23 0 0 0 chr4 78774070 78774093 -76856027 + AT_rich Low_complexity Low_complexity 1 23 0 3 148 589 334 19 127 chr4 78774181 78774599 -76855521 + MTEb LTR MaLR 4 376 -3 3 1186 1221 121 0 29 chr4 78774651 78774856 -76855264 - L1Md_F2 LINE L1 0 6582 6384 3 1186 786 50 0 0 chr4 78774971 78775070 -76855050 + (GAAAA)n Simple_repeat Simple_repeat 1 99 0 3 1186 1903 75 71 4 chr4 78775368 78775686 -76854434 + L1_Mus1 LINE L1 6278 6567 0 3 1186 204 67 0 0 chr4 78775697 78775727 -76854393 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1186 644 79 34 0 chr4 78775745 78775834 -76854286 - B1_Mm SINE Alu 0 147 56 3 1186 396 59 0 0 chr4 78775863 78775914 -76854206 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 1186 3434 249 46 32 chr4 78775914 78776788 -76853332 - Lx5 LINE L1 -19 7031 6146 3 1186 533 235 68 26 chr4 78776798 78777052 -76853068 - L1M3 LINE L1 -2511 3632 3364 3 1186 721 209 46 26 chr4 78777214 78777529 -76852591 + Lx4A LINE L1 5917 6199 -851 3 1186 185 65 32 0 chr4 78778375 78778406 -76851714 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1186 316 321 127 6 chr4 78778437 78778594 -76851526 - Lx7 LINE L1 -385 7311 7136 3 1186 332 311 0 0 chr4 78778623 78778729 -76851391 - Lx7 LINE L1 -862 6834 6729 3 1186 513 0 0 0 chr4 78778731 78778788 -76851332 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1186 32 43 0 0 chr4 78779363 78779409 -76850711 + AT_rich Low_complexity Low_complexity 1 46 0 3 1186 3252 152 12 25 chr4 78779414 78779975 -76850145 - Lx4A LINE L1 -3 7055 6502 3 1186 2438 81 0 6 chr4 78779983 78780344 -76849776 - L1_Mus1 LINE L1 0 6567 6238 3 1186 1070 110 7 0 chr4 78780344 78780498 -76849622 + L1_Mus1 LINE L1 6090 6244 -323 3 1186 848 143 13 45 chr4 78780496 78780650 -76849470 - Lx4B LINE L1 -546 6512 6364 3 1186 1283 177 155 7 chr4 78781109 78781405 -76848715 - Lx4A LINE L1 -679 6379 6040 3 1186 5496 125 5 2 chr4 78782141 78782981 -76847139 + Lx LINE L1 5813 6654 0 3 1186 327 262 98 64 chr4 78783306 78783510 -76846610 - Lx7 LINE L1 -1 7695 7485 3 1186 571 241 74 39 chr4 78783554 78783757 -76846363 + Lx7 LINE L1 7141 7350 -346 3 1186 1326 263 27 34 chr4 78784159 78784603 -76845517 - Lx9 LINE L1 -188 7456 7016 3 1186 441 0 0 0 chr4 78784604 78784653 -76845467 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 1186 1369 240 91 9 chr4 78784765 78785106 -76845014 - ORR1B1 LTR MaLR -24 370 2 3 1186 183 129 0 0 chr4 78785106 78785137 -76844983 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1186 1112 75 0 0 chr4 78785176 78785322 -76844798 + B1_Mm SINE Alu 2 147 0 3 1186 1520 41 126 9 chr4 78785891 78786128 -76843992 - MTA_Mm LTR MaLR 0 421 157 3 1186 359 104 0 152 chr4 78786060 78786139 -76843981 + MTA_Mm LTR MaLR 334 400 0 3 1186 1405 96 6 26 chr4 78786139 78786449 -76843671 + MTA_Mm-int LTR MaLR 1 224 -874 3 1186 2873 79 8 8 chr4 78786449 78786845 -76843275 + MTA_Mm LTR MaLR 1 396 0 3 1186 271 221 16 24 chr4 78786866 78786991 -76843129 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1186 35316 38 1 0 chr4 78788690 78794358 -76835762 + L1Md_Gf LINE L1 2 5589 -297 3 1186 8877 11 0 0 chr4 78794358 78795354 -76834766 + L1Md_T LINE L1 5587 6582 0 3 1186 35316 43 1 0 chr4 78795354 78795365 -76834755 + L1Md_Gf LINE L1 5590 5602 -284 3 1186 5335 120 57 36 chr4 78796704 78797673 -76832447 - Lx3_Mus LINE L1 -1 7008 6020 3 1186 317 280 32 56 chr4 78798721 78798846 -76831274 - ID_B1 SINE B4 -12 212 91 3 1186 246 128 0 0 chr4 78799253 78799292 -76830828 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1186 198 103 0 0 chr4 78799851 78799880 -76830240 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1186 234 0 0 0 chr4 78799917 78799943 -76830177 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1186 465 50 0 0 chr4 78799943 78800002 -76830118 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1186 1873 122 348 21 chr4 78800703 78801080 -76829040 + Lx2 LINE L1 6497 6996 -1 3 1186 21 0 0 0 chr4 78801760 78801781 -76828339 + AT_rich Low_complexity Low_complexity 1 21 0 3 1186 1657 183 41 19 chr4 78802209 78802576 -76827544 - Lx LINE L1 -131 6869 6142 3 1186 804 273 94 35 chr4 78802933 78803302 -76826818 - MTD LTR MaLR 0 407 1 3 1186 2211 11 114 0 chr4 78803421 78803683 -76826437 + RLTR10B LTR ERVK 1 292 0 3 1186 482 313 20 0 chr4 78803701 78803848 -76826272 + Lx7 LINE L1 6299 6448 -1248 3 1186 247 317 97 51 chr4 78803854 78804070 -76826050 - Lx7 LINE L1 -1404 6292 6067 3 1186 881 234 35 35 chr4 78804128 78804462 -76825658 - Lx7 LINE L1 -1515 5958 5628 3 1186 201 147 0 0 chr4 78804548 78804582 -76825538 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1186 713 160 8 0 chr4 78804584 78804715 -76825405 + Lx5 LINE L1 5239 5370 -507 3 1186 2885 143 4 46 chr4 78804708 78805402 -76824718 - L1_Mur1 LINE L1 -1226 4651 4050 3 1186 5804 161 13 16 chr4 78805407 78806424 -76823696 + Lx3B LINE L1 5959 6972 -1 3 1186 3504 207 29 24 chr4 78806436 78807428 -76822692 + Lx5 LINE L1 5340 6337 -713 3 1186 25 51 0 0 chr4 78807827 78807866 -76822254 + AT_rich Low_complexity Low_complexity 1 39 0 3 1186 21 36 0 0 chr4 78807927 78807955 -76822165 + AT_rich Low_complexity Low_complexity 1 28 0 3 1186 217 184 0 20 chr4 78808143 78808193 -76821927 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1186 1399 260 82 15 chr4 78808365 78808756 -76821364 + MTD LTR MaLR 1 417 -2 3 1186 350 301 52 67 chr4 78809445 78809655 -76820465 + RLTR25B LTR ERVK 1 207 -821 3 1186 188 274 39 0 chr4 78810133 78810184 -76819936 + MIR SINE MIR 96 148 -114 3 1186 22 35 0 0 chr4 78810698 78810727 -76819393 + AT_rich Low_complexity Low_complexity 1 29 0 3 1186 1098 138 0 0 chr4 78811756 78812100 -76818020 + (CA)n Simple_repeat Simple_repeat 1 344 0 3 1186 333 122 0 0 chr4 78812100 78812149 -76817971 + HAL1-3A_ME LINE L1 1973 2021 -837 3 1186 25 99 0 0 chr4 78812241 78812322 -76817798 + AT_rich Low_complexity Low_complexity 1 81 0 3 1186 307 247 35 0 chr4 78812742 78812827 -76817293 + Lx8 LINE L1 5833 5920 -1553 3 1186 1295 281 85 8 chr4 78812847 78813224 -76816896 + MTD LTR MaLR 1 406 -13 3 1186 790 346 184 17 chr4 78813402 78814124 -76815996 + Lx8 LINE L1 6178 7020 -453 3 1186 779 377 51 18 chr4 78814577 78815123 -76814997 - Lx8 LINE L1 -287 7186 6623 3 1186 603 270 31 22 chr4 78815513 78815740 -76814380 - Lx7 LINE L1 -1784 5912 5684 3 1186 308 344 62 47 chr4 78818284 78818476 -76811644 - LFSINE_Vert SINE SINE -167 292 98 3 1186 1968 118 16 26 chr4 78818524 78818836 -76811284 - RLTR27 LTR ERVK 0 309 1 3 1186 790 295 35 15 chr4 78819316 78819519 -76810601 - URR1B DNA MER1_type -16 209 3 3 1186 412 153 50 10 chr4 78819749 78819848 -76810272 - Lx2 LINE L1 0 6997 6895 3 1186 24 32 0 0 chr4 78819932 78819963 -76810157 + AT_rich Low_complexity Low_complexity 1 31 0 4 1186 239 313 103 51 chr4 78820233 78820431 -76809689 + MIRc SINE MIR 26 233 -35 4 1186 729 99 0 0 chr4 78820788 78820909 -76809211 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 1186 336 24 0 0 chr4 78820909 78820949 -76809171 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1186 333 349 106 0 chr4 78820956 78821088 -76809032 - B3A SINE B2 -52 146 1 4 1186 1639 278 54 41 chr4 78821290 78821596 -76808524 + Lx6 LINE L1 6913 7208 -252 4 1186 324 0 0 0 chr4 78821596 78821632 -76808488 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 1186 1639 278 54 41 chr4 78821632 78821862 -76808258 + Lx6 LINE L1 7209 7455 -5 4 1186 223 395 116 35 chr4 78821938 78822111 -76808009 + B4 SINE B4 94 280 -12 4 1186 423 0 0 0 chr4 78822155 78822202 -76807918 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1186 396 40 0 0 chr4 78822202 78822251 -76807869 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1186 23 33 0 0 chr4 78822751 78822781 -76807339 + AT_rich Low_complexity Low_complexity 1 30 0 4 1186 463 246 16 56 chr4 78822916 78823041 -76807079 - Lx2B LINE L1 -502 6498 6379 4 1186 4218 149 6 4 chr4 78823044 78823746 -76806374 - L1_Mus4 LINE L1 -2 6634 5932 4 1186 3084 147 75 2 chr4 78823750 78824469 -76805651 + L1_Mus4 LINE L1 5176 5933 -703 4 1186 1477 147 40 0 chr4 78824456 78824728 -76805392 + L1_Mur2 LINE L1 4074 4356 -1521 4 1186 3581 192 153 27 chr4 78824730 78825858 -76804262 + ORR1A1-int LTR MaLR 3 1220 -743 4 1186 2945 140 21 21 chr4 78825858 78826377 -76803743 - Lx3B LINE L1 -498 6475 5957 4 1186 684 67 0 0 chr4 78826381 78826471 -76803649 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 4 1186 7243 103 22 3 chr4 78826502 78827756 -76802364 - L1_Mus3 LINE L1 0 6638 5365 4 1186 432 55 0 0 chr4 78827757 78827812 -76802308 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 1186 1048 171 71 0 chr4 78827820 78828031 -76802089 + L1_Mur2 LINE L1 4662 4887 -999 4 1186 1623 26 5 0 chr4 78828055 78828245 -76801875 - B2_Mm1a SINE B2 -1 192 2 4 1186 453 223 0 0 chr4 78828247 78828341 -76801779 - Lx2B LINE L1 -990 6010 5917 4 1186 1996 247 8 13 chr4 78828339 78828810 -76801310 + Lx2B LINE L1 6511 6979 -21 4 1186 208 184 0 20 chr4 78828834 78828884 -76801236 + A-rich Low_complexity Low_complexity 2 50 0 4 1186 243 234 0 30 chr4 78829829 78829895 -76800225 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 4 1186 5067 86 9 4 chr4 78830609 78831307 -76798813 - L1Md_F2 LINE L1 0 6582 5882 4 1186 2292 75 119 11 chr4 78831853 78832205 -76797915 + RLTR10 LTR ERVK 1 390 0 4 1186 1697 243 88 7 chr4 78832709 78833152 -76796968 + Lx7 LINE L1 6128 6606 -1090 4 1186 2384 220 19 23 chr4 78833154 78833675 -76796445 - RLTR11A LTR ERVK 0 528 10 4 1186 1880 281 120 8 chr4 78833682 78834226 -76795894 + Lx7 LINE L1 6601 7219 -477 4 1186 204 40 0 0 chr4 78834226 78834251 -76795869 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1186 1880 281 120 8 chr4 78834251 78834362 -76795758 + Lx7 LINE L1 7220 7329 -367 4 1186 503 82 18 35 chr4 78834397 78834511 -76795609 + (TTTTTG)n Simple_repeat Simple_repeat 3 114 0 4 1186 1075 56 28 7 chr4 78834512 78834657 -76795463 - B1_Mus1 SINE Alu 0 148 1 4 1186 312 289 23 15 chr4 78834696 78834826 -76795294 + Lx7 LINE L1 7560 7690 -6 4 1186 434 293 16 0 chr4 78834909 78835032 -76795088 - Lx9 LINE L1 -890 6754 6630 4 1186 451 202 40 20 chr4 78835035 78835136 -76794984 - ORR1C2 LTR MaLR -61 323 221 4 1186 955 265 18 36 chr4 78835193 78835490 -76794630 + MT2A LTR ERVL 1 445 -156 4 1186 703 360 81 34 chr4 78835490 78835875 -76794245 - RLTR18B LTR ERVK 0 512 110 4 1186 398 333 62 12 chr4 78835879 78836040 -76794080 - RLTR18B LTR ERVK -331 181 13 4 1186 428 243 221 0 chr4 78836058 78836194 -76793926 + MT2A LTR ERVL 368 533 0 4 1186 388 89 58 29 chr4 78836233 78836337 -76793783 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 4 1186 3061 44 0 5 chr4 78836970 78837337 -76792783 - RLTR10B2 LTR ERVK 0 365 1 4 1186 318 332 31 53 chr4 78837628 78837854 -76792266 + Lx9 LINE L1 2932 3152 -2991 4 1186 1391 299 32 50 chr4 78837854 78838495 -76791625 + Lx9 LINE L1 5316 5930 -382 4 1186 2522 87 0 3 chr4 78838495 78838843 -76791277 - L1_Mus1 LINE L1 -1 6566 6220 4 1186 880 297 48 63 chr4 78838843 78838887 -76791233 + Lx9 LINE L1 5921 5970 -1674 4 1186 1084 114 6 6 chr4 78838902 78839079 -76791041 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 4 1186 29 28 0 0 chr4 78839238 78839274 -76790846 + AT_rich Low_complexity Low_complexity 1 36 0 4 1186 716 301 71 96 chr4 78839291 78839614 -76790506 + ORR1D1 LTR MaLR 1 315 -59 4 1186 1856 298 28 44 chr4 78839617 78840465 -76789655 + Lx9 LINE L1 6630 7464 -180 4 1186 258 81 0 0 chr4 78840494 78840531 -76789589 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4 1186 3266 244 16 36 chr4 78840820 78841688 -76788432 + Lx3C LINE L1 6124 6974 -2 4 1186 4344 181 94 9 chr4 78841706 78841748 -76788372 - L1_Mur2 LINE L1 -2352 3525 3473 4 1186 267 31 0 0 chr4 78841748 78841780 -76788340 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1186 4344 181 94 9 chr4 78841780 78842743 -76787377 - L1_Mur2 LINE L1 -2405 3472 2435 4 1186 500 194 10 0 chr4 78842771 78842869 -76787251 + L1_Mur2 LINE L1 2433 2531 -3346 4 1186 1788 206 43 3 chr4 78842872 78843218 -76786902 + Lx4A LINE L1 6697 7056 -2 4 1186 978 163 15 5 chr4 78843276 78843479 -76786641 - L1_Mur2 LINE L1 -3457 2420 2216 4 1186 1159 361 17 5 chr4 78843485 78843914 -76786206 - RMER1C Other Other -473 869 408 4 1186 3047 175 57 35 chr4 78844434 78845032 -76785088 - RMER19C LTR ERVK 0 611 1 4 1186 578 93 41 0 chr4 78846275 78846372 -76783748 - Lx2 LINE L1 0 6997 6897 4 1186 195 42 0 0 chr4 78846746 78846770 -76783350 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1186 327 157 0 0 chr4 78846771 78846841 -76783279 + GA-rich Low_complexity Low_complexity 1 70 0 4 1186 7383 77 16 8 chr4 78849546 78850558 -76779562 + L1_Mus3 LINE L1 5610 6629 -9 4 1186 1320 221 52 41 chr4 78852461 78852870 -76777250 - RMER6B LTR ERVK -7 454 1 4 1186 477 226 56 19 chr4 78852871 78852979 -76777141 - RMER6B LTR ERVK -349 112 1 4 1186 6245 149 65 5 chr4 78853207 78854917 -76775203 - L1_Mus4 LINE L1 0 6997 4636 4 1186 233 29 29 0 chr4 78854917 78854951 -76775169 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 1186 5133 193 135 5 chr4 78854951 78855041 -76775079 - L1_Mus4 LINE L1 -1251 4635 4546 4 1186 392 327 52 26 chr4 78855178 78855545 -76774575 + Lx7 LINE L1 5428 5830 -1866 4 1186 1138 307 41 36 chr4 78855955 78856590 -76773530 - L1_Rod LINE L1 -1092 5051 4414 4 1186 212 31 62 0 chr4 78856630 78856662 -76773458 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 1186 3953 141 7 57 chr4 78856665 78857301 -76772819 - Lx3A LINE L1 -7 6974 6373 4 1186 1381 55 38 0 chr4 78857301 78857484 -76772636 - B2_Mm1t SINE B2 -2 191 2 4 1186 3953 141 7 57 chr4 78857484 78857602 -76772518 - Lx3A LINE L1 -609 6372 6258 4 1186 3896 124 13 3 chr4 78857603 78858455 -76771665 + Lx3B LINE L1 5393 6247 -726 4 1186 2687 198 102 19 chr4 78858586 78858634 -76771486 + RMER6C LTR ERVK 1 52 -638 4 1186 1636 198 22 0 chr4 78858634 78858952 -76771168 - ORR1A4 LTR MaLR -4 325 1 4 1186 2687 198 102 19 chr4 78858952 78859540 -76770580 + RMER6C LTR ERVK 53 690 0 4 1186 455 300 6 12 chr4 78859562 78859724 -76770396 - L1_Rod LINE L1 -1658 4189 4029 4 1186 183 42 0 0 chr4 78859820 78859844 -76770276 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1186 1580 206 33 25 chr4 78860036 78860399 -76769721 - ORR1B2 LTR MaLR -1 366 1 4 1186 5165 228 49 22 chr4 78860399 78861868 -76768252 - ORR1B2-int LTR MaLR 0 1509 1 4 1186 778 237 17 17 chr4 78861868 78862048 -76768072 - ORR1B2 LTR MaLR 0 367 188 4 1186 278 249 42 17 chr4 78862299 78862441 -76767679 - L1_Rod LINE L1 -3917 2223 2070 4 1186 1085 90 11 11 chr4 78862504 78862683 -76767437 + (TTC)n Simple_repeat Simple_repeat 1 179 0 4 1186 330 132 0 0 chr4 78862692 78862745 -76767375 + (TCC)n Simple_repeat Simple_repeat 3 55 0 4 1186 376 277 116 25 chr4 78862852 78863248 -76766872 - L1_Rod LINE L1 -3978 1902 1474 4 1186 705 188 27 1 chr4 78863254 78863416 -76766704 - B2_Mm2 SINE B2 -11 205 3 4 1186 33 25 0 0 chr4 78863497 78863537 -76766583 + AT_rich Low_complexity Low_complexity 1 40 0 4 1186 313 267 71 56 chr4 78863543 78863809 -76766311 - L1_Rod LINE L1 -6296 1312 1043 4 1186 1351 185 50 66 chr4 78863998 78864316 -76765804 - ORR1A4 LTR MaLR -8 321 9 4 1186 42 36 0 0 chr4 78864924 78864980 -76765140 + AT_rich Low_complexity Low_complexity 1 56 0 4 1186 180 0 0 0 chr4 78865042 78865062 -76765058 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1186 354 23 0 0 chr4 78865240 78865283 -76764837 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1186 310 91 36 0 chr4 78867463 78867518 -76762602 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1186 1015 114 0 0 chr4 78867623 78867763 -76762357 + B1_Mus1 SINE Alu 5 144 -4 4 1186 415 238 104 24 chr4 78869157 78869321 -76760799 - HAL1-2a_MD LINE L1 -508 2516 2340 4 1186 478 286 83 22 chr4 78869674 78869903 -76760217 + MER2 DNA MER2_type 91 333 -12 4 1186 2402 76 0 21 chr4 78871091 78871428 -76758692 - L1_Mus1 LINE L1 0 6567 6238 4 1186 229 306 33 8 chr4 78872631 78872753 -76757367 + L1M2 LINE L1 5474 5598 -705 4 1186 236 283 47 110 chr4 78872755 78872788 -76757332 + MT2B LTR ERVL 139 163 -438 4 1186 402 265 78 0 chr4 78872788 78872890 -76757230 + B1_Mur3 SINE Alu 3 112 -37 4 1186 256 311 24 16 chr4 78872942 78873066 -76757054 + L1M2 LINE L1 5677 5801 -496 4 1186 21 57 0 0 chr4 78873417 78873452 -76756668 + AT_rich Low_complexity Low_complexity 1 35 0 4 1186 2432 84 9 3 chr4 78873932 78874277 -76755843 + IAPEY_LTR LTR ERVK 37 383 -2 4 1186 7570 90 3 9 chr4 78874284 78875349 -76754771 + IAPEy-int LTR ERVK 1 1058 -6455 4 1186 20168 76 3 8 chr4 78875349 78878069 -76752051 + IAPEy-int LTR ERVK 4804 7509 -4 4 1186 784 275 5 31 chr4 78878145 78878340 -76751780 + MTD LTR MaLR 10 199 -220 4 1186 318 195 0 0 chr4 78878351 78878428 -76751692 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1186 516 255 25 38 chr4 78878455 78878614 -76751506 + MTD LTR MaLR 263 419 0 4 1186 306 152 10 39 chr4 78878808 78878911 -76751209 + CT-rich Low_complexity Low_complexity 1 100 0 4 1186 342 107 0 0 chr4 78880718 78880774 -76749346 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1186 898 116 7 0 chr4 78881152 78881298 -76748822 - L1_Mus2 LINE L1 0 6566 6420 4 1186 510 17 0 0 chr4 78881428 78881487 -76748633 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1186 233 271 0 0 chr4 78882231 78882290 -76747830 + Arthur1B DNA Tip100 686 744 -481 4 1186 189 147 0 0 chr4 78882528 78882562 -76747558 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 1186 236 297 144 30 chr4 78882736 78882868 -76747252 + ORR1D2 LTR MaLR 158 304 -66 4 1186 528 317 53 23 chr4 78882893 78883193 -76746927 + L1_Mur3 LINE L1 3434 3742 -2138 4 1186 1500 271 174 37 chr4 78883283 78884609 -76745511 + L1_Mur3 LINE L1 3735 5241 -639 4 1186 285 89 0 0 chr4 78884610 78884655 -76745465 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1186 300 133 0 0 chr4 78884667 78884727 -76745393 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1186 24 0 0 0 chr4 78885099 78885123 -76744997 + AT_rich Low_complexity Low_complexity 1 24 0 5 1186 2972 43 5 3 chr4 78886356 78886727 -76743393 - L1Md_F3 LINE L1 -1 6583 6212 5 1186 4405 77 2 16 chr4 78886726 78887333 -76742787 + L1Md_F2 LINE L1 5983 6580 -2 5 1186 5495 213 73 19 chr4 78887337 78888525 -76741595 + RLTR22_Mur LTR ERVK 73 1327 -521 5 1186 354 23 0 0 chr4 78888525 78888568 -76741552 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1186 5495 212 73 19 chr4 78888568 78888827 -76741293 + RLTR22_Mur LTR ERVK 1328 1596 -252 5 1186 2777 68 3 6 chr4 78888912 78889269 -76740851 + L1_Mus3 LINE L1 6140 6495 -143 5 1186 829 267 48 65 chr4 78889733 78890089 -76740031 - RLTR15 LTR ERVK -9 350 1 5 1186 183 100 0 0 chr4 78890715 78890745 -76739375 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1186 384 22 0 0 chr4 78891371 78891416 -76738704 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 5 1186 421 303 175 0 chr4 78891431 78891642 -76738478 + L1M2 LINE L1 4978 5225 -918 5 1186 641 228 83 34 chr4 78891970 78892174 -76737946 + Lx6 LINE L1 7184 7397 -63 5 1186 3532 167 5 8 chr4 78892333 78892960 -76737160 - Lx4A LINE L1 -776 6282 5658 5 1186 3922 182 46 3 chr4 78892962 78893704 -76736416 + Lx4A LINE L1 6282 7055 -3 5 1186 26 0 0 0 chr4 78893707 78893733 -76736387 + AT_rich Low_complexity Low_complexity 1 26 0 5 1186 545 14 0 28 chr4 78893837 78893908 -76736212 + (TTA)n Simple_repeat Simple_repeat 2 70 0 5 1186 25 31 0 0 chr4 78895099 78895131 -76734989 + AT_rich Low_complexity Low_complexity 1 32 0 5 1186 26 82 0 0 chr4 78895530 78895591 -76734529 + AT_rich Low_complexity Low_complexity 1 61 0 5 1186 344 280 57 6 chr4 78895953 78896129 -76733991 - Lx9 LINE L1 -2 7642 7458 5 1186 244 189 122 0 chr4 78896129 78896219 -76733901 - Lx9 LINE L1 -133 7511 7411 5 1186 965 271 46 28 chr4 78896222 78896548 -76733572 + Lx9 LINE L1 6919 7250 -394 5 1186 22670 105 19 2 chr4 78896773 78898073 -76732047 - L1_Mus1 LINE L1 -1 6566 5251 5 1186 351 0 0 0 chr4 78898073 78898112 -76732008 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1186 22670 109 20 1 chr4 78898112 78900886 -76729234 - L1_Mus1 LINE L1 -633 5250 2418 5 1186 4334 178 22 28 chr4 78900878 78902176 -76727944 - L1_Mus4 LINE L1 -14 6622 5265 5 1186 465 19 0 0 chr4 78902176 78902230 -76727890 + (TTC)n Simple_repeat Simple_repeat 2 55 0 5 1186 947 106 8 0 chr4 78902231 78902363 -76727757 - B1_Mus2 SINE Alu -14 133 1 5 1186 4334 167 1 23 chr4 78902363 78902651 -76727469 - L1_Mus4 LINE L1 -619 5264 4979 5 1186 553 125 2 0 chr4 78902652 78902746 -76727374 + L1_Mus4 LINE L1 5798 5923 -255 5 1186 23 33 0 0 chr4 78902753 78902783 -76727337 + AT_rich Low_complexity Low_complexity 1 30 0 5 1186 209 98 24 0 chr4 78902791 78902832 -76727288 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1186 748 116 9 0 chr4 78902852 78902964 -76727156 + L1_Mus4 LINE L1 5879 5991 -645 5 148 35085 48 3 4 chr4 78903152 78908398 -76721722 + L1Md_T LINE L1 251 5589 -297 5 1187 8312 35 2 0 chr4 78908398 78909392 -76720728 + L1Md_T LINE L1 5590 6585 0 5 1187 363 245 20 0 chr4 78910309 78910456 -76719664 + (TA)n Simple_repeat Simple_repeat 2 151 0 5 1187 647 291 61 13 chr4 78911171 78911385 -76718735 + B3A SINE B2 1 216 0 5 1187 30 27 0 0 chr4 78911391 78911428 -76718692 + AT_rich Low_complexity Low_complexity 1 37 0 5 1187 222 402 0 0 chr4 78911673 78911760 -76718360 + B1_Mus1 SINE Alu 6 92 -56 5 1187 4222 237 92 11 chr4 78912937 78914051 -76716069 - ORR1B2-int LTR MaLR -305 1204 1 5 1187 1215 167 275 14 chr4 78914051 78914342 -76715778 - ORR1B2 LTR MaLR 0 367 1 5 1187 24 0 0 0 chr4 78914783 78914807 -76715313 + AT_rich Low_complexity Low_complexity 1 24 0 5 1187 22 0 0 0 chr4 78915216 78915238 -76714882 + AT_rich Low_complexity Low_complexity 1 22 0 5 1187 369 293 10 60 chr4 78915241 78915441 -76714679 - L1_Rod LINE L1 -204 5643 5454 5 1187 370 239 9 9 chr4 78915455 78915565 -76714555 + L1_Mur3 LINE L1 5309 5418 -462 5 1187 196 390 24 0 chr4 78915880 78915962 -76714158 + L2a LINE L2 3291 3374 -52 5 1187 24 32 0 0 chr4 78916160 78916191 -76713929 + AT_rich Low_complexity Low_complexity 1 31 0 5 1187 437 329 51 32 chr4 78916336 78916647 -76713473 - L1MA6 LINE L1 -119 6181 5865 5 1187 217 268 34 173 chr4 78917014 78917222 -76712898 + B2_Mm2 SINE B2 11 189 -6 5 1187 21 0 0 0 chr4 78917292 78917313 -76712807 + AT_rich Low_complexity Low_complexity 1 21 0 5 1187 1256 264 61 11 chr4 78918971 78919331 -76710789 + MTD LTR MaLR 1 378 -41 5 1187 33 25 0 0 chr4 78919510 78919550 -76710570 + AT_rich Low_complexity Low_complexity 1 40 0 5 1187 663 236 165 5 chr4 78920778 78920978 -76709142 + Lx4A LINE L1 6827 7058 0 5 1187 318 50 0 0 chr4 78921106 78921146 -76708974 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1187 1839 135 8 79 chr4 78922199 78922553 -76707567 - ORR1A4 LTR MaLR 0 329 1 5 1187 6587 193 68 143 chr4 78922553 78924675 -76705445 - ORR1A4-int LTR MaLR 0 1963 1 5 1187 1703 171 9 37 chr4 78924678 78925006 -76705114 - ORR1A4 LTR MaLR -3 324 6 5 1187 677 281 22 5 chr4 78925107 78925329 -76704791 - Lx9 LINE L1 -611 7033 6808 5 1187 521 318 31 36 chr4 78925330 78925555 -76704565 + Lx6 LINE L1 6066 6289 -1171 5 1187 792 324 38 46 chr4 78925542 78925959 -76704161 - Lx9 LINE L1 -828 6816 6403 5 1187 186 43 0 0 chr4 78925972 78925995 -76704125 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1187 688 305 22 36 chr4 78926002 78926362 -76703758 + L1_Rod LINE L1 3945 4299 -1548 5 1187 1281 147 20 28 chr4 78926362 78926614 -76703506 + L1_Mus3 LINE L1 6386 6635 -3 5 1187 343 294 75 6 chr4 78926924 78927085 -76703035 - Lx9 LINE L1 -212 7432 7261 5 1187 358 243 118 28 chr4 78927078 78927256 -76702864 + Lx9 LINE L1 7440 7633 -11 5 1187 23 0 0 0 chr4 78927452 78927475 -76702645 + AT_rich Low_complexity Low_complexity 1 23 0 5 1187 709 344 11 0 chr4 78928859 78929048 -76701072 + B3 SINE B2 17 207 -9 5 1187 31 26 0 0 chr4 78929285 78929323 -76700797 + AT_rich Low_complexity Low_complexity 1 38 0 5 1187 21 0 0 0 chr4 78929559 78929580 -76700540 + AT_rich Low_complexity Low_complexity 1 21 0 5 1187 21 36 0 0 chr4 78930555 78930583 -76699537 + AT_rich Low_complexity Low_complexity 1 28 0 5 1187 25 0 0 0 chr4 78935029 78935054 -76695066 + AT_rich Low_complexity Low_complexity 1 25 0 5 1187 1939 135 18 18 chr4 78935321 78935640 -76694480 + RMER17B LTR ERVK 1 323 -635 5 1187 306 0 0 0 chr4 78935640 78935674 -76694446 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1187 1939 135 18 18 chr4 78935674 78935685 -76694435 + RMER17B LTR ERVK 324 331 -627 5 1187 4500 75 0 8 chr4 78935742 78936333 -76693787 - L1_Mus1 LINE L1 -1 6566 5981 5 1187 3139 73 2 0 chr4 78936343 78936753 -76693367 + L1_Mus1 LINE L1 5588 5998 -569 5 1187 1589 273 57 44 chr4 78936753 78937298 -76692822 + RMER17B LTR ERVK 402 953 -5 5 1187 741 61 0 0 chr4 78938333 78938431 -76691689 - Lx LINE L1 -576 6078 5981 5 1187 280 111 0 0 chr4 78938431 78938485 -76691635 + Lx LINE L1 6600 6653 -1 5 1187 608 77 0 11 chr4 78938523 78938615 -76691505 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1187 1043 256 191 42 chr4 78938674 78939237 -76690883 - RMER6C LTR ERVK 0 690 1 5 1187 274 224 0 0 chr4 78939313 78939380 -76690740 - Lx9 LINE L1 -153 7491 7425 5 1187 1072 208 93 108 chr4 78939402 78939725 -76690395 - RLTR26 LTR ERVK 0 642 325 5 1187 2700 102 8 0 chr4 78939736 78940128 -76689992 - L1_Mus3 LINE L1 0 6638 6244 5 1187 251 114 0 0 chr4 78940187 78940222 -76689898 - L1_Mus3 LINE L1 -393 6245 6211 5 1187 1901 160 16 6 chr4 78940222 78940537 -76689583 - RLTR26 LTR ERVK -324 318 1 5 1187 822 279 13 89 chr4 78940632 78940947 -76689173 - Lx9 LINE L1 -375 7269 6979 5 1187 393 301 48 27 chr4 78940947 78941094 -76689026 - Lx7 LINE L1 -808 6888 6739 5 1187 1244 275 75 31 chr4 78941096 78941756 -76688364 + Lx7 LINE L1 5211 5911 -1785 5 1187 462 286 7 28 chr4 78941871 78942015 -76688105 - B1_Mur2 SINE Alu -5 144 4 5 1187 1429 280 94 39 chr4 78942252 78942795 -76687325 - Lx7 LINE L1 -797 6899 6327 5 1187 384 59 0 0 chr4 78942864 78942915 -76687205 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1187 8109 34 13 0 chr4 78942983 78944101 -76686019 - L1Md_T LINE L1 0 6582 5447 5 1187 26 50 0 0 chr4 78944101 78944141 -76685979 + AT_rich Low_complexity Low_complexity 1 40 0 5 1187 40018 17 2 7 chr4 78944141 78950305 -76679815 - L1Md_A LINE L1 -2 6580 449 5 1187 7293 31 0 7 chr4 78950306 78951195 -76678925 - L1_Mm LINE L1 -422 5461 4579 5 1187 13445 32 0 0 chr4 78951195 78952826 -76677294 + L1_Mm LINE L1 2949 4579 -1304 5 1187 616 327 60 60 chr4 78952984 78953303 -76676817 + RLTR26 LTR ERVK 97 415 -227 5 1187 22 35 0 0 chr4 78953707 78953736 -76676384 + AT_rich Low_complexity Low_complexity 1 29 0 5 1187 3957 101 5 3 chr4 78953906 78954494 -76675626 + L1_Mur1 LINE L1 3752 4340 -1546 5 1187 462 368 77 26 chr4 78955060 78955255 -76674865 - ID_B1 SINE B4 -8 216 12 5 1187 306 243 18 27 chr4 78956630 78956740 -76673380 + L1MEf LINE L1 1955 2063 -4137 5 1187 413 349 14 71 chr4 78957924 78958134 -76671986 - MTE-int LTR MaLR -831 749 552 5 1187 424 330 52 21 chr4 78958222 78958414 -76671706 - MTE-int LTR MaLR -1097 483 286 5 1187 879 315 113 15 chr4 78958555 78958890 -76671230 - MTEb LTR MaLR -5 374 7 5 1187 337 277 75 21 chr4 78960394 78960582 -76669538 + L1MA6 LINE L1 6043 6240 -60 5 1187 943 296 92 31 chr4 78960803 78961162 -76668958 + MTD LTR MaLR 10 390 -29 5 1187 275 257 27 0 chr4 78961402 78961476 -76668644 - MTC LTR MaLR -339 82 7 5 1187 192 40 0 0 chr4 78962180 78962205 -76667915 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1187 975 373 69 28 chr4 78962292 78963072 -76667048 - Lx7 LINE L1 -466 7230 6419 5 1187 411 301 67 41 chr4 78963074 78963268 -76666852 + Lx7 LINE L1 5703 5901 -1795 5 1187 265 370 12 24 chr4 78963489 78963658 -76666462 + Lx8 LINE L1 6142 6308 -1165 5 1187 1012 255 77 103 chr4 78963750 78964100 -76666020 - RMER15 LTR ERVL -45 530 190 5 1187 554 304 20 52 chr4 78964089 78964339 -76665781 - RMER15 LTR ERVL -298 277 36 5 1187 229 300 99 6 chr4 78964529 78964690 -76665430 - L1M2 LINE L1 -2017 4123 3948 5 1187 273 165 51 10 chr4 78964726 78964824 -76665296 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1187 1752 295 69 5 chr4 78964967 78965587 -76664533 - Lx3C LINE L1 -3 6973 6314 5 1187 1002 189 0 0 chr4 78965585 78965775 -76664345 + L1_Mur2 LINE L1 4420 4609 -1268 5 1187 1568 33 0 0 chr4 78965771 78965954 -76664166 - L1Md_F2 LINE L1 -166 6416 6234 5 1187 645 29 29 10 chr4 78965954 78966057 -76664063 + L1Md_F2 LINE L1 6476 6580 -2 5 1187 969 163 0 67 chr4 78966098 78966308 -76663812 + L1_Mur2 LINE L1 4596 4791 -1086 5 1187 388 315 135 38 chr4 78966374 78966796 -76663324 - L1M2 LINE L1 -2466 3677 3215 5 1187 240 287 205 36 chr4 78967216 78967328 -76662792 - RSINE1 SINE B4 -33 132 2 6 1187 28 61 0 0 chr4 78967644 78967693 -76662427 + AT_rich Low_complexity Low_complexity 1 49 0 6 1187 3729 61 0 8 chr4 78968766 78969247 -76660873 + L1Md_F2 LINE L1 6095 6571 -11 6 1187 306 129 0 0 chr4 78971568 78971630 -76658490 + (A)n Simple_repeat Simple_repeat 1 62 0 6 1187 29 47 0 0 chr4 78972338 78972381 -76657739 + AT_rich Low_complexity Low_complexity 1 43 0 6 1187 42 65 0 0 chr4 78972885 78972962 -76657158 + AT_rich Low_complexity Low_complexity 1 77 0 6 1187 243 0 0 0 chr4 78973050 78973077 -76657043 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1187 1886 231 55 18 chr4 78973080 78973570 -76656550 - Lx4B LINE L1 -88 6970 6463 6 1187 180 0 0 0 chr4 78974400 78974420 -76655700 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1187 1115 198 69 27 chr4 78974420 78974680 -76655440 - Lx4B LINE L1 -579 6479 6209 6 1187 1527 182 99 70 chr4 78974680 78975093 -76655027 - L1_Mur2 LINE L1 -284 5593 5169 6 1187 1852 165 2 103 chr4 78975096 78975353 -76654767 - RMER17C LTR ERVK -8 402 185 6 1187 614 25 0 25 chr4 78975353 78975434 -76654686 + (GAA)n Simple_repeat Simple_repeat 3 81 0 6 1187 1852 165 2 103 chr4 78975434 78975623 -76654497 - RMER17C LTR ERVK -226 184 1 6 1187 7407 173 25 46 chr4 78975623 78977245 -76652875 - L1_Mur2 LINE L1 -700 5177 3590 6 1187 2479 239 134 65 chr4 78977249 78978125 -76651995 - RMER13A LTR ERVK 0 908 5 6 1187 2867 136 75 2 chr4 78978136 78978245 -76651875 - L1_Mur2 LINE L1 -2286 3591 3482 6 1187 234 0 0 0 chr4 78978245 78978271 -76651849 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1187 2867 136 75 2 chr4 78978271 78978705 -76651415 - L1_Mur2 LINE L1 -2396 3481 3009 6 1187 4112 217 43 7 chr4 78978687 78978965 -76651155 - L1_Mur2 LINE L1 -3538 2339 2062 6 1187 498 46 0 0 chr4 78978965 78979030 -76651090 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1187 4112 209 29 6 chr4 78979030 78980054 -76650066 - L1_Mur2 LINE L1 -3816 2061 997 6 1187 267 307 16 16 chr4 78980126 78980255 -76649865 + L1VL2 LINE L1 533 661 -5674 6 1187 37 62 0 0 chr4 78980345 78980410 -76649710 + AT_rich Low_complexity Low_complexity 1 65 0 6 1187 29 0 0 0 chr4 78980893 78980922 -76649198 + AT_rich Low_complexity Low_complexity 1 29 0 6 1187 2764 220 95 17 chr4 78980930 78981643 -76648477 + Lx4B LINE L1 6258 7026 -32 6 1187 24 32 0 0 chr4 78981661 78981692 -76648428 + AT_rich Low_complexity Low_complexity 1 31 0 6 1187 183 42 0 0 chr4 78981825 78981849 -76648271 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1187 1197 247 14 98 chr4 78981882 78982250 -76647870 + Lx9 LINE L1 6665 7001 -643 6 1187 4765 165 12 70 chr4 78983081 78984000 -76646120 - Lx3C LINE L1 -9 6967 6101 6 1187 189 0 0 0 chr4 78984000 78984021 -76646099 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1187 4765 165 12 70 chr4 78984021 78984065 -76646055 - Lx3C LINE L1 -876 6100 6060 6 1187 504 86 0 0 chr4 78984144 78984214 -76645906 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1187 5107 271 50 33 chr4 78984280 78985359 -76644761 - Lx6 LINE L1 -4 7456 6388 6 1187 2531 101 96 5 chr4 78985359 78985736 -76644384 - RLTR10A LTR ERVK 0 411 1 6 1187 5107 271 50 33 chr4 78985736 78986162 -76643958 - Lx6 LINE L1 -1073 6387 5926 6 1187 717 185 159 0 chr4 78986211 78986406 -76643714 + URR1A DNA MER1_type 1 226 0 6 1187 207 94 0 0 chr4 78986467 78986487 -76643633 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1187 384 22 0 0 chr4 78986487 78986532 -76643588 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1187 207 94 0 0 chr4 78986532 78986543 -76643577 + (TA)n Simple_repeat Simple_repeat 2 12 0 6 1187 777 174 0 0 chr4 78987178 78987339 -76642781 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 1187 651 84 0 0 chr4 78988672 78988767 -76641353 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1187 208 0 62 0 chr4 78989206 78989238 -76640882 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1187 23 97 0 0 chr4 78989739 78989811 -76640309 + AT_rich Low_complexity Low_complexity 1 72 0 6 1187 1836 216 50 2 chr4 78989949 78990389 -76639731 + RMER6B LTR ERVK 1 461 0 6 1187 4162 202 51 1 chr4 78990427 78991474 -76638646 + MYSERV6-int LTR ERVK 43 1141 -7818 6 1187 2346 116 16 13 chr4 78991498 78991873 -76638247 + Lx LINE L1 6273 6648 -6 6 1187 373 183 41 141 chr4 78991873 78991994 -76638126 + MYSERV6-int LTR ERVK 1240 1348 -7611 6 1187 5908 195 34 13 chr4 78991979 78993320 -76636800 + MYSERV6-int LTR ERVK 1718 3085 -5874 6 1187 3357 171 64 7 chr4 78993305 78993993 -76636127 + MYSERV6-int LTR ERVK 3750 4476 -4483 6 1187 34 0 0 0 chr4 78994026 78994060 -76636060 + AT_rich Low_complexity Low_complexity 1 34 0 6 1187 1270 186 119 0 chr4 78994079 78994364 -76635756 + RLTR19-int LTR ERVK 842 1160 -4977 6 1187 1400 188 6 92 chr4 78994364 78994692 -76635428 + ORR1A2 LTR MaLR 1 300 -27 6 1187 260 83 40 40 chr4 78994707 78994782 -76635338 + T-rich Low_complexity Low_complexity 1 75 0 6 1187 733 103 28 0 chr4 78994782 78994889 -76635231 - B1_Mus1 SINE Alu 0 148 39 6 1187 433 71 100 0 chr4 78994884 78994954 -76635166 + ORR1A3 LTR MaLR 250 326 0 6 1187 2033 172 55 4 chr4 78994954 78995409 -76634711 + RLTR19-int LTR ERVK 1156 1633 -4504 6 1187 6153 167 41 109 chr4 78995420 78997057 -76633063 + RLTR19-int LTR ERVK 1847 3371 -2766 6 1187 284 237 216 0 chr4 78997447 78997544 -76632576 - PB1D7 SINE Alu -2 118 1 6 1187 1093 137 8 100 chr4 78998210 78998469 -76631651 + RLTR19-int LTR ERVK 3413 3647 -2490 6 1187 529 245 41 14 chr4 78998466 78998611 -76631509 + RLTR19-int LTR ERVK 5901 6049 -88 6 1187 198 0 0 0 chr4 78998776 78998798 -76631322 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1187 423 0 0 0 chr4 78998798 78998844 -76631276 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1187 325 264 11 0 chr4 78998872 78998959 -76631161 + RLTR19-int LTR ERVK 6049 6136 -1 6 1187 2213 168 108 2 chr4 78998960 78999386 -76630734 + RLTR19 LTR ERVK 1 471 -28 6 1187 1357 166 32 42 chr4 78999395 78999703 -76630417 + MYSERV6-int LTR ERVK 4714 5018 -3941 6 1187 1185 219 0 12 chr4 78999760 79000000 -76630120 + MYSERV6-int LTR ERVK 5356 5592 -3367 6 1187 1906 204 34 24 chr4 79000002 79000420 -76629700 + MYSERV6-int LTR ERVK 5593 6014 -2945 1 1187 2048 249 17 21 chr4 79000466 79000946 -76629174 + Lx5 LINE L1 6570 7047 -3 2 1187 22 56 0 0 chr4 79000987 79001023 -76629097 + AT_rich Low_complexity Low_complexity 1 36 0 3 1187 413 283 25 0 chr4 79001118 79001238 -76628882 - Lx8 LINE L1 -1081 6392 6270 4 1187 434 49 16 0 chr4 79001241 79001302 -76628818 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1187 318 321 125 28 chr4 79001303 79001803 -76628317 - Lx8 LINE L1 -1307 6166 5621 4 1187 3695 169 23 8 chr4 79002122 79002779 -76627341 + RLTR17 LTR ERVK 3 669 -23 6 1187 243 0 0 0 chr4 79002983 79003010 -76627110 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1187 228 35 0 0 chr4 79003044 79003073 -76627047 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1187 45 34 0 0 chr4 79003447 79003506 -76626614 + AT_rich Low_complexity Low_complexity 1 59 0 9 1187 343 275 48 109 chr4 79003506 79003653 -76626467 - MTEa LTR MaLR -14 365 210 1 1187 1531 231 55 19 chr4 79003660 79003961 -76626159 + RMER20B LTR ERVK 1 318 -309 1 1187 651 65 0 0 chr4 79003961 79004054 -76626066 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1187 1531 231 55 19 chr4 79004054 79004118 -76626002 + RMER20B LTR ERVK 319 378 -249 1 1187 616 117 0 11 chr4 79004164 79004259 -76625861 + ORR1B1 LTR MaLR 300 393 -1 1 1187 571 327 92 33 chr4 79004363 79004635 -76625485 + Lx8 LINE L1 6412 6699 -774 1 1187 346 146 24 0 chr4 79005707 79005789 -76624331 + CT-rich Low_complexity Low_complexity 2 85 0 1 1187 225 182 0 0 chr4 79005792 79005847 -76624273 + T-rich Low_complexity Low_complexity 1 55 0 1 1187 276 30 0 0 chr4 79005911 79005944 -76624176 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1 1187 611 227 61 0 chr4 79005955 79006087 -76624033 - B1_Mur2 SINE Alu 0 149 10 1 1187 383 383 23 0 chr4 79006339 79006467 -76623653 - RSINE1 SINE B4 -16 149 19 1 1187 400 258 6 238 chr4 79006488 79006656 -76623464 + MTD LTR MaLR 130 258 -161 2 1187 396 0 0 0 chr4 79006775 79006819 -76623301 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1187 285 295 189 8 chr4 79006822 79006954 -76623166 - B3A SINE B2 -37 161 6 2 1187 234 320 93 8 chr4 79006958 79007087 -76623033 - MTE-int LTR MaLR -1440 140 1 2 1187 1647 235 35 5 chr4 79007232 79007655 -76622465 + Lx6 LINE L1 5166 5601 -279 2 1187 540 292 112 11 chr4 79007674 79007986 -76622134 + Lx6 LINE L1 5853 6179 -1281 2 1187 238 259 0 17 chr4 79007995 79008054 -76622066 - RLTR22_Mur LTR ERVK -485 1363 1306 2 1187 219 146 0 0 chr4 79008054 79008095 -76622025 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1187 3036 274 9 18 chr4 79008136 79008353 -76621767 + Lx6 LINE L1 6282 6502 -958 2 1187 2460 119 23 12 chr4 79008353 79008752 -76621368 - RLTR9D LTR ERVK 0 403 1 2 1187 3036 274 9 18 chr4 79008752 79009312 -76620808 + Lx6 LINE L1 6503 7052 -408 2 1187 567 206 189 8 chr4 79009314 79009534 -76620586 + Lx7 LINE L1 7390 7696 0 2 1187 4044 197 121 35 chr4 79009675 79010689 -76619431 - RLTR25A LTR ERVK 0 1103 3 2 1187 883 315 117 68 chr4 79011629 79012014 -76618106 + MTD LTR MaLR 3 406 -1 3 1187 1499 314 44 43 chr4 79012074 79012795 -76617325 + Lx8 LINE L1 6392 7113 -360 3 1187 320 273 22 11 chr4 79012825 79012914 -76617206 - MTE2b LTR MaLR 0 379 290 3 1187 1106 96 0 0 chr4 79012928 79013074 -76617046 + B1_Mm SINE Alu 2 147 0 3 1187 304 72 18 18 chr4 79013074 79013131 -76616989 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 3 1187 267 289 90 66 chr4 79013166 79013333 -76616787 - MTE2b LTR MaLR -154 265 95 3 1187 417 268 55 21 chr4 79013492 79013704 -76616416 - MTC-int LTR MaLR -699 881 483 3 1187 2200 232 49 78 chr4 79013704 79014951 -76615169 + L1_Mur2 LINE L1 914 2049 -3828 3 1187 2464 73 12 3 chr4 79014970 79015298 -76614822 - IAPEY_LTR LTR ERVK 0 385 55 3 1187 20670 66 3 10 chr4 79015298 79018028 -76612092 - IAPEy-int LTR ERVK 0 7513 4804 3 1187 3644 137 11 13 chr4 79018028 79018655 -76611465 - IAPEy-int LTR ERVK -6455 1058 433 3 1187 22 35 0 0 chr4 79018770 79018799 -76611321 + AT_rich Low_complexity Low_complexity 1 29 0 3 1187 2239 94 0 10 chr4 79019055 79019368 -76610752 - IAPEy-int LTR ERVK -7203 310 1 3 1187 2670 74 97 0 chr4 79019368 79019719 -76610401 - IAPEY_LTR LTR ERVK 0 385 1 3 1187 5015 207 110 22 chr4 79019737 79021246 -76608874 + L1_Mur2 LINE L1 2050 3690 -2187 3 1187 2561 208 26 200 chr4 79021241 79022353 -76607767 + L1_Mur2 LINE L1 4810 5728 -152 3 1187 23 0 0 53 chr4 79022482 79022497 -76607623 + AT_rich Low_complexity Low_complexity 1 15 0 4 1187 469 279 15 15 chr4 79022497 79022628 -76607492 + B1_Mus1 SINE Alu 3 133 -15 4 1187 23 0 0 53 chr4 79022628 79022650 -76607470 + AT_rich Low_complexity Low_complexity 1 21 0 4 1187 322 309 21 11 chr4 79022880 79022975 -76607145 - PB1D10 SINE Alu -9 108 13 4 1187 22 35 0 0 chr4 79023025 79023054 -76607066 + AT_rich Low_complexity Low_complexity 1 29 0 4 1187 430 113 3 8 chr4 79023219 79023312 -76606808 - L1_Mur1 LINE L1 -2509 3374 3285 4 1187 4065 155 121 29 chr4 79023312 79023871 -76606249 - Lx LINE L1 -191 6463 5827 4 1187 1065 75 0 0 chr4 79023871 79024004 -76606116 + B1_Mm SINE Alu 3 135 -12 4 1187 282 29 0 0 chr4 79024005 79024040 -76606080 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1187 4065 159 62 12 chr4 79024040 79024658 -76605462 - Lx LINE L1 -828 5826 5196 4 1187 2452 178 0 0 chr4 79024655 79025099 -76605021 + L1_Mur2 LINE L1 4084 4527 -1350 4 1187 3212 168 16 7 chr4 79025100 79025675 -76604445 + RLTR1D LTR ERV1 26 605 0 5 1187 259 241 12 12 chr4 79025690 79025770 -76604350 + L1VL1 LINE L1 310 389 -6033 5 1187 381 301 15 8 chr4 79025906 79026040 -76604080 + L1Md_F LINE L1 675 809 -5807 5 1187 2129 169 41 142 chr4 79026042 79026594 -76603526 + L1Md_F LINE L1 725 1210 -5447 5 1187 981 229 76 117 chr4 79026594 79027004 -76603116 - RLTR9C LTR ERVK 0 393 1 5 1187 5967 118 1 0 chr4 79027004 79027957 -76602163 + L1Md_F LINE L1 1205 2158 -3725 5 1187 1068 163 5 29 chr4 79027957 79028138 -76601982 + L1_Mus1 LINE L1 6363 6542 -25 5 1187 3048 20 0 3 chr4 79028138 79028485 -76601635 - ORR1A0 LTR MaLR 0 346 1 5 1187 1068 163 5 29 chr4 79028485 79028512 -76601608 + L1_Mus1 LINE L1 6543 6566 -1 5 1187 220 122 0 24 chr4 79028516 79028558 -76601562 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 5 1187 2392 190 0 21 chr4 79028560 79029033 -76601087 + L1_Mur2 LINE L1 4731 5193 -684 4 1187 36 23 0 0 chr4 79029036 79029079 -76601041 + AT_rich Low_complexity Low_complexity 1 43 0 5 1187 1035 203 17 13 chr4 79029079 79029318 -76600802 - Lx3A LINE L1 -18 6963 6724 5 1187 7596 177 36 14 chr4 79029319 79031392 -76598728 - L1VL4 LINE L1 -997 2562 442 5 1187 46 19 0 0 chr4 79031705 79031758 -76598362 + AT_rich Low_complexity Low_complexity 1 53 0 6 1187 444 51 0 0 chr4 79031758 79031817 -76598303 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1187 783 308 78 53 chr4 79031825 79032455 -76597665 - Lx5 LINE L1 -26 7434 6287 6 1187 1670 200 0 3 chr4 79032465 79032771 -76597349 - Lx2A LINE L1 -132 6876 6572 6 1187 197 367 0 67 chr4 79033180 79033285 -76596835 - L2a LINE L2 -22 3404 3307 6 1187 721 316 117 3 chr4 79033552 79033891 -76596229 + MTC LTR MaLR 42 400 -21 6 1187 22 0 0 0 chr4 79034081 79034103 -76596017 + AT_rich Low_complexity Low_complexity 1 22 0 6 1187 23 0 0 0 chr4 79034209 79034232 -76595888 + AT_rich Low_complexity Low_complexity 1 23 0 6 1187 22 56 0 0 chr4 79034526 79034562 -76595558 + AT_rich Low_complexity Low_complexity 1 36 0 6 1187 885 307 23 54 chr4 79034764 79035293 -76594827 + RMER15 LTR ERVL 13 502 -73 6 1187 208 87 20 61 chr4 79035684 79035733 -76594387 + T-rich Low_complexity Low_complexity 4 50 0 7 1187 3244 117 4 8 chr4 79035734 79036225 -76593895 - Lx3A LINE L1 -3 6978 6490 7 1187 736 243 20 74 chr4 79036228 79036393 -76593727 + Lx8 LINE L1 7231 7387 -86 7 148 3175 47 10 24 chr4 79036393 79036810 -76593310 + IAPLTR2a LTR ERVK 1 411 0 7 1188 736 243 20 74 chr4 79036810 79036888 -76593232 + Lx8 LINE L1 7388 7461 -12 7 1188 644 305 80 4 chr4 79037794 79038057 -76592063 + RMER15 LTR ERVL 277 559 -16 7 1188 777 279 110 60 chr4 79038143 79038543 -76591577 + MTC LTR MaLR 2 421 0 7 1188 3403 41 18 29 chr4 79039138 79039592 -76590528 + L1Md_F3 LINE L1 6136 6584 0 7 1188 216 140 70 0 chr4 79039904 79039961 -76590159 + (TTTG)n Simple_repeat Simple_repeat 3 63 0 7 1188 247 223 0 0 chr4 79039980 79040038 -76590082 - Lx3B LINE L1 -7 6974 6917 7 1188 600 208 8 8 chr4 79040038 79040164 -76589956 - RMER19A LTR ERVK -593 144 19 7 1188 2573 198 83 19 chr4 79040164 79040751 -76589369 + Lx4A LINE L1 6413 7037 -21 8 1188 588 14 0 0 chr4 79040909 79040978 -76589142 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1188 405 0 0 0 chr4 79040978 79041022 -76589098 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1188 354 23 0 0 chr4 79041089 79041132 -76588988 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1188 492 18 0 0 chr4 79041132 79041188 -76588932 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1188 21 0 0 0 chr4 79041323 79041344 -76588776 + AT_rich Low_complexity Low_complexity 1 21 0 8 1188 21 82 0 0 chr4 79044288 79044337 -76585783 + AT_rich Low_complexity Low_complexity 1 49 0 8 1188 2424 179 17 15 chr4 79044441 79044901 -76585219 + RMER6-int LTR ERVK 2643 3103 -74 8 1188 284 77 0 0 chr4 79044950 79044989 -76585131 + RMER6C LTR ERVK 1 39 -681 8 1188 623 298 40 50 chr4 79044995 79045292 -76584828 - RLTR15 LTR ERVK -65 294 1 8 1188 1643 214 122 21 chr4 79045292 79045723 -76584397 + RMER6C LTR ERVK 213 687 -3 8 1188 348 374 63 6 chr4 79047364 79047539 -76582581 + B3A SINE B2 1 185 -13 8 1188 21 0 0 0 chr4 79047847 79047868 -76582252 + AT_rich Low_complexity Low_complexity 1 21 0 9 1188 810 226 12 12 chr4 79048045 79048215 -76581905 + ORR1C1 LTR MaLR 1 170 -208 9 1188 1191 307 70 31 chr4 79048218 79048803 -76581317 + Lx9 LINE L1 6538 7145 -499 9 1188 989 146 11 0 chr4 79048855 79049033 -76581087 + GA-rich Low_complexity Low_complexity 1 180 0 9 1188 261 0 0 0 chr4 79049033 79049062 -76581058 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 9 1188 430 287 0 0 chr4 79049158 79049287 -76580833 + Lx7 LINE L1 5553 5681 -199 9 1188 787 192 115 6 chr4 79049338 79049385 -76580735 - Lx3B LINE L1 -22 6951 6898 9 1188 189 0 0 0 chr4 79049385 79049406 -76580714 + (CCCA)n Simple_repeat Simple_repeat 3 23 0 9 1188 787 192 115 6 chr4 79049406 79049541 -76580579 - Lx3B LINE L1 -76 6897 6750 9 1188 695 291 124 13 chr4 79049532 79049911 -76580209 + Lx7 LINE L1 5697 6117 -1579 9 1188 393 252 57 43 chr4 79050175 79050316 -76579804 - RLTR16 LTR ERVK -360 145 3 9 1188 1690 268 34 16 chr4 79050317 79050814 -76579306 + Lx7 LINE L1 6115 6620 -1076 9 1188 2856 94 2 5 chr4 79050843 79051240 -76578880 - L1_Mus2 LINE L1 0 6566 6171 9 1188 452 257 51 39 chr4 79051264 79051442 -76578678 - L1_Mur3 LINE L1 -1779 4101 3922 1 1188 1624 200 58 30 chr4 79051571 79051932 -76578188 + ORR1B1 LTR MaLR 1 371 -23 1 1188 444 252 166 32 chr4 79051935 79052025 -76578095 + RMER6A LTR ERVK 511 674 -82 1 1188 524 155 12 0 chr4 79052025 79052109 -76578011 + ORR1B1 LTR MaLR 8 92 -302 1 1188 444 252 166 32 chr4 79052109 79052152 -76577968 + RMER6A LTR ERVK 675 756 0 1 1188 1635 219 37 62 chr4 79052180 79052476 -76577644 + ORR1B1 LTR MaLR 1 307 -87 1 1188 6275 69 8 27 chr4 79052476 79053314 -76576806 - RLTR13B2 LTR ERVK 0 822 1 1 1188 1635 219 37 62 chr4 79053314 79053421 -76576699 + ORR1B1 LTR MaLR 308 394 0 1 1188 661 310 36 51 chr4 79053426 79053762 -76576358 + Lx8 LINE L1 5589 5919 -1777 1 1188 756 358 115 36 chr4 79053792 79054562 -76575558 + Lx8 LINE L1 6284 7112 -584 1 1188 30 77 0 0 chr4 79054678 79054743 -76575377 + AT_rich Low_complexity Low_complexity 1 65 0 1 1188 726 73 0 0 chr4 79055397 79055507 -76574613 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 1188 311 188 98 10 chr4 79055757 79055859 -76574261 - Lx3_Mus LINE L1 0 7009 6899 1 1188 1645 163 26 10 chr4 79055984 79056288 -76573832 + Lx LINE L1 6344 6652 -2 1 1188 22 0 0 0 chr4 79058297 79058319 -76571801 + AT_rich Low_complexity Low_complexity 1 22 0 1 1188 342 0 0 0 chr4 79058685 79058723 -76571397 + (TATAA)n Simple_repeat Simple_repeat 5 42 0 1 1188 5766 87 38 0 chr4 79058876 79059697 -76570423 + L1_Mus3 LINE L1 5787 6638 0 1 1188 636 81 0 0 chr4 79059728 79059815 -76570305 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1188 847 324 87 14 chr4 79059949 79060468 -76569652 - Lx8 LINE L1 -808 6665 6109 1 1188 1069 208 127 46 chr4 79061596 79061903 -76568217 - IAPEY3_LTR LTR ERVK 0 332 1 1 1188 1351 204 55 15 chr4 79061903 79062246 -76567874 - IAP-d-int LTR ERVK 0 6481 6125 1 1188 1634 131 58 8 chr4 79062263 79062585 -76567535 - IAPEY3-int LTR ERVK -342 7338 6965 1 1188 1378 133 107 0 chr4 79062585 79062810 -76567310 - IAP-d-int LTR ERVK -1287 5255 5007 1 1188 361 158 0 0 chr4 79062810 79062867 -76567253 - IAP-d-int LTR ERVK -6039 503 447 1 1188 277 260 49 20 chr4 79062884 79062986 -76567134 - RMER16-int LTR ERVK -6015 1566 1462 1 1188 599 228 141 0 chr4 79063119 79063268 -76566852 - RMER16-int LTR ERVK -4903 503 334 1 1188 755 132 0 0 chr4 79063277 79063398 -76566722 - MMERVK10C-int LTR ERVK -6748 833 713 1 1188 2850 121 2 9 chr4 79063506 79063931 -76566189 - MMERVK10C-int LTR ERVK -7159 422 1 1 1188 998 208 127 46 chr4 79063931 79064238 -76565882 - IAPEY3_LTR LTR ERVK 0 332 1 1 1188 309 358 68 19 chr4 79064239 79064561 -76565559 + Charlie5 DNA MER1_type 1814 2151 -473 1 1188 21 57 0 0 chr4 79064853 79064888 -76565232 + AT_rich Low_complexity Low_complexity 1 35 0 1 1188 325 291 42 42 chr4 79065082 79065294 -76564826 + Lx9 LINE L1 7407 7618 -26 1 1188 234 0 0 0 chr4 79065852 79065878 -76564242 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1188 591 15 0 0 chr4 79065878 79065945 -76564175 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1188 311 326 21 35 chr4 79065973 79066116 -76564004 - B3A SINE B2 -52 146 6 1 1188 262 362 54 41 chr4 79066243 79066390 -76563730 + B1F SINE Alu 1 149 0 1 1188 192 77 0 0 chr4 79066407 79066433 -76563687 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1188 1021 62 0 7 chr4 79067680 79067826 -76562294 - L1Md_T LINE L1 0 6582 6438 1 1188 1148 50 0 0 chr4 79067826 79067967 -76562153 + L1Md_T LINE L1 6234 6374 -208 1 1188 197 108 0 26 chr4 79068901 79068939 -76561181 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 1 1188 913 308 46 62 chr4 79069027 79069398 -76560722 + ORR1D2 LTR MaLR 6 370 0 1 1188 6481 36 3 0 chr4 79069730 79070508 -76559612 - L1Md_A LINE L1 0 6582 5803 1 1188 4985 29 0 0 chr4 79070508 79071093 -76559027 + L1Md_A LINE L1 5224 5808 -75 1 1188 21 36 0 0 chr4 79072136 79072164 -76557956 + AT_rich Low_complexity Low_complexity 1 28 0 1 1188 37666 49 1 9 chr4 79072164 79078273 -76551847 - L1Md_T LINE L1 -13 6569 518 1 1188 417 307 46 30 chr4 79079041 79079172 -76550948 + MER68 LTR ERVL 158 290 -273 1 1188 273 341 65 19 chr4 79079987 79080250 -76549870 - L1MEc LINE L1 -6089 311 37 1 1188 437 129 11 0 chr4 79080976 79081069 -76549051 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1188 309 153 0 0 chr4 79081228 79081300 -76548820 + T-rich Low_complexity Low_complexity 1 72 0 1 1188 1029 104 0 0 chr4 79081302 79081446 -76548674 - B1_Mm SINE Alu 0 147 4 1 1188 582 15 0 0 chr4 79081518 79081585 -76548535 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1188 234 0 0 0 chr4 79081585 79081610 -76548510 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1188 658 234 22 0 chr4 79081898 79082035 -76548085 - B1_Mur4 SINE Alu 0 150 11 1 1188 298 115 45 22 chr4 79082826 79082915 -76547205 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1 1188 468 84 36 0 chr4 79083035 79083118 -76547002 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 1 1188 240 172 0 0 chr4 79083325 79083383 -76546737 + GA-rich Low_complexity Low_complexity 2 59 0 1 1188 330 26 0 0 chr4 79083390 79083429 -76546691 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1188 786 198 50 28 chr4 79083429 79083475 -76546645 - ORR1C2 LTR MaLR -198 186 144 1 1188 198 0 0 0 chr4 79083475 79083497 -76546623 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1188 786 198 50 28 chr4 79083497 79083632 -76546488 - ORR1C2 LTR MaLR -241 143 2 1 1188 898 306 43 25 chr4 79083724 79084097 -76546023 + MTD LTR MaLR 1 419 0 1 1188 21 0 0 0 chr4 79084122 79084143 -76545977 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 2128 172 14 69 chr4 79084539 79085032 -76545088 + RMER4A LTR ERVK 1 466 0 1 1188 1716 219 74 5 chr4 79085038 79085084 -76545036 - MTC LTR MaLR 0 421 376 1 1188 333 0 0 0 chr4 79085084 79085121 -76544999 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1188 1716 219 74 5 chr4 79085121 79085468 -76544652 - MTC LTR MaLR -46 375 1 1 1188 1050 207 209 22 chr4 79085471 79085787 -76544333 + MTC-int LTR MaLR 9 383 -875 1 1188 342 167 14 0 chr4 79085787 79085859 -76544261 - L1_Mur2 LINE L1 -2410 3467 3395 1 1188 1549 158 11 4 chr4 79085867 79086128 -76543992 + Lx4A LINE L1 6514 6776 -282 1 1188 3215 70 146 33 chr4 79086135 79086621 -76543499 + L1_Mus2 LINE L1 6026 6566 0 1 1188 1365 225 7 3 chr4 79086651 79086937 -76543183 + Lx4A LINE L1 6771 7057 -1 1 1188 2955 234 38 47 chr4 79086944 79087729 -76542391 + MTC-int LTR MaLR 361 1138 -120 1 1188 2804 33 0 0 chr4 79087729 79088060 -76542060 + L1Md_T LINE L1 5256 5586 -297 1 1188 8269 40 1 0 chr4 79088060 79089055 -76541065 + L1Md_T LINE L1 5587 6582 0 1 1188 381 207 46 0 chr4 79089065 79089152 -76540968 + MTC-int LTR MaLR 1162 1252 -6 1 1188 551 214 297 54 chr4 79089172 79089394 -76540726 + MTC LTR MaLR 28 305 -102 1 1188 230 171 0 0 chr4 79090248 79090289 -76539831 + Lx7 LINE L1 7240 7280 -416 1 1188 1580 285 68 9 chr4 79090531 79091062 -76539058 - Lx9 LINE L1 -729 6915 6354 1 1188 3400 215 53 11 chr4 79091054 79091843 -76538277 + Lx2B LINE L1 6159 6980 -20 1 1188 1046 209 11 138 chr4 79091848 79092310 -76537810 - RMER17C LTR ERVK -7 403 1 1 1188 9065 143 66 21 chr4 79092310 79093996 -76536124 - RMER17C-int LTR ERVK 0 3238 1478 1 1188 24 0 0 0 chr4 79094001 79094025 -76536095 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 2503 252 105 45 chr4 79094239 79095137 -76534983 - Lx9 LINE L1 -1414 6230 5213 1 1188 189 0 0 0 chr4 79095137 79095158 -76534962 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1188 2503 240 119 38 chr4 79095158 79095612 -76534508 - Lx9 LINE L1 -635 5212 4763 1 1188 419 227 20 129 chr4 79095709 79095856 -76534264 + MT2B LTR ERVL 127 257 -344 1 1188 860 168 0 27 chr4 79095754 79095901 -76534219 + B1_Mus1 SINE Alu 6 148 0 1 1188 229 340 43 74 chr4 79095972 79096134 -76533986 + RMER15 LTR ERVL 405 561 -14 1 1188 385 151 47 0 chr4 79096223 79096309 -76533811 - L1_Mus3 LINE L1 -9 6629 6540 1 1188 806 127 37 0 chr4 79096309 79096443 -76533677 + L1_Mus3 LINE L1 6397 6535 -103 1 1188 17083 164 15 11 chr4 79096440 79100116 -76530004 - L1VL4 LINE L1 -1529 4354 660 1 1188 183 204 0 0 chr4 79100663 79100712 -76529408 + GA-rich Low_complexity Low_complexity 2 50 0 1 1188 830 215 17 38 chr4 79101552 79101789 -76528331 + RLTR42-int LTR ERVK 4006 4237 -1285 1 1188 1078 285 102 64 chr4 79102110 79102690 -76527430 + RLTR42-int LTR ERVK 4258 4859 -663 1 1188 659 233 153 0 chr4 79103192 79103394 -76526726 - Lx9 LINE L1 -197 7447 7215 1 1188 1613 284 29 19 chr4 79104043 79104460 -76525660 - MTC LTR MaLR 0 421 1 1 1188 2901 249 78 50 chr4 79104460 79104638 -76525482 - MTC-int LTR MaLR 0 1258 1089 1 1188 995 110 0 27 chr4 79104638 79104771 -76525349 + B1_Mus2 SINE Alu 2 134 -13 1 1188 360 45 14 43 chr4 79104771 79104840 -76525280 + (CAAA)n Simple_repeat Simple_repeat 1 67 0 1 1188 995 110 0 27 chr4 79104840 79104855 -76525265 + B1_Mus2 SINE Alu 135 146 -1 1 1188 2901 255 75 51 chr4 79104855 79105738 -76524382 - MTC-int LTR MaLR -170 1088 249 1 1188 5220 147 31 10 chr4 79106632 79107527 -76522593 - Lx2 LINE L1 0 6997 6084 1 1188 261 0 0 0 chr4 79108748 79108777 -76521343 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1188 437 92 0 0 chr4 79108777 79108842 -76521278 - L1_Mus3 LINE L1 -15 6623 6559 1 1188 558 355 60 60 chr4 79109187 79109588 -76520532 + MLT1G LTR MaLR 158 558 -37 1 1188 456 19 0 0 chr4 79109844 79109897 -76520223 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1188 3355 57 28 7 chr4 79109985 79110410 -76519710 + RLTR10C LTR ERVK 3 436 0 1 1188 3683 123 25 2 chr4 79110428 79111016 -76519104 + Lx3_Mus LINE L1 6407 7008 -1 1 1188 993 279 161 5 chr4 79111423 79111774 -76518346 + Lx2B LINE L1 6610 6978 -22 1 1188 387 53 0 0 chr4 79112167 79112224 -76517896 - L1_Mus3 LINE L1 -7 6631 6575 1 1188 14163 14 0 0 chr4 79112399 79114738 -76515382 - L1Md_A LINE L1 0 6582 4244 1 1188 470 292 80 46 chr4 79115220 79115457 -76514663 + Lx8 LINE L1 6903 7147 -326 1 1188 883 226 96 77 chr4 79115843 79116272 -76513848 + RMER2 LTR ERV1 1 536 -31 1 1188 350 125 0 0 chr4 79116382 79116438 -76513682 - Lx3_Mus LINE L1 -952 6057 6002 1 1188 4688 107 9 0 chr4 79116426 79117092 -76513028 + Lx3_Mus LINE L1 6200 6871 -138 1 1188 3977 136 56 0 chr4 79117097 79117743 -76512377 + L1Md_F LINE L1 436 1117 -5499 1 1188 5131 81 5 5 chr4 79117746 79118502 -76511618 + L1Md_F LINE L1 1604 2359 -3524 1 1188 482 100 11 22 chr4 79118508 79118600 -76511520 + L1Md_F2 LINE L1 6485 6575 -7 1 1188 722 87 47 0 chr4 79118609 79118736 -76511384 + Lx3_Mus LINE L1 6877 7009 0 1 1188 368 337 74 58 chr4 79119165 79119490 -76510630 + L1M2 LINE L1 4492 4821 -1322 1 1188 20505 84 1 29 chr4 79119704 79123297 -76506823 + L1Md_F2 LINE L1 593 4080 -1803 1 1188 5518 65 3 0 chr4 79123296 79123998 -76506122 + L1Md_F2 LINE L1 4883 5586 -297 1 1188 8005 50 0 0 chr4 79123998 79124975 -76505145 + L1Md_F2 LINE L1 5587 6563 -19 1 1188 378 0 0 0 chr4 79124976 79125018 -76505102 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1 1188 510 96 0 0 chr4 79125018 79125091 -76505029 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1188 570 323 30 4 chr4 79125451 79125687 -76504433 + MLT2C2 LTR ERVL 77 318 -146 1 1188 732 320 135 26 chr4 79125735 79126232 -76503888 - Lx8 LINE L1 0 7473 6923 1 1188 1039 279 77 58 chr4 79126323 79126919 -76503201 + Lx7 LINE L1 5273 5911 -1785 1 1188 2333 94 3 0 chr4 79126993 79127313 -76502807 + L1_Mus1 LINE L1 6246 6566 -1 1 1188 26 0 0 0 chr4 79127447 79127473 -76502647 + AT_rich Low_complexity Low_complexity 1 26 0 1 1188 22 0 0 0 chr4 79127825 79127847 -76502273 + AT_rich Low_complexity Low_complexity 1 22 0 1 1188 333 68 0 0 chr4 79127956 79128000 -76502120 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 2 1188 199 175 50 0 chr4 79128657 79128697 -76501423 - L2 LINE L2 -1573 1846 1805 2 1188 441 325 105 43 chr4 79128793 79129070 -76501050 + MamRep434 DNA TcMar 78 371 -55 2 1188 37219 30 25 6 chr4 79130849 79136929 -76493191 - L1Md_T LINE L1 -1 6581 391 2 1188 501 62 0 0 chr4 79137302 79137367 -76492753 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1188 233 362 108 32 chr4 79137595 79137752 -76492368 + MIRb SINE MIR 55 223 -45 2 1188 256 254 28 21 chr4 79137866 79138011 -76492109 + (CATATA)n Simple_repeat Simple_repeat 5 150 0 2 1188 377 70 18 0 chr4 79138630 79138687 -76491433 + (TTTTC)n Simple_repeat Simple_repeat 4 61 0 2 1188 189 74 0 0 chr4 79138841 79138868 -76491252 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1188 969 172 0 0 chr4 79139449 79139629 -76490491 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1188 2325 66 26 0 chr4 79139702 79140005 -76490115 + RLTR10E LTR ERVK 1 311 0 2 1188 24 0 0 0 chr4 79140029 79140053 -76490067 + AT_rich Low_complexity Low_complexity 1 24 0 2 1188 2691 281 49 72 chr4 79140473 79141549 -76488571 + Lx7 LINE L1 5885 6936 -760 2 1188 3087 189 38 64 chr4 79141550 79142234 -76487886 + Lx2 LINE L1 6330 6995 -2 2 1188 1926 269 61 48 chr4 79142241 79142651 -76487469 + Lx7 LINE L1 6931 7365 -331 2 1188 639 56 37 0 chr4 79142651 79142759 -76487361 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 2 1188 1926 269 61 48 chr4 79142759 79143104 -76487016 + Lx7 LINE L1 7366 7695 -1 2 1188 445 144 22 0 chr4 79143547 79143637 -76486483 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1188 282 29 0 0 chr4 79144067 79144102 -76486018 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1188 351 0 0 0 chr4 79144849 79144888 -76485232 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1188 16104 133 27 29 chr4 79145745 79148514 -76481606 + Lx3_Mus LINE L1 3001 5800 -86 2 1188 1164 43 0 0 chr4 79148514 79148653 -76481467 + B1_Mm SINE Alu 1 139 -8 2 1188 16104 175 109 64 chr4 79148653 79149767 -76480353 + Lx3_Mus LINE L1 5798 7009 0 2 1188 525 16 0 0 chr4 79149879 79149941 -76480179 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1188 339 151 14 0 chr4 79150007 79150080 -76480040 - L1_Mus3 LINE L1 -12 6626 6553 2 1188 2098 104 0 3 chr4 79150081 79150381 -76479739 + L1_Mus3 LINE L1 6309 6607 -31 2 1188 810 315 26 7 chr4 79151319 79151588 -76478532 + B4A SINE B4 1 274 -18 2 1188 252 0 0 0 chr4 79151600 79151628 -76478492 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1188 588 102 0 0 chr4 79151628 79151726 -76478394 + (GA)n Simple_repeat Simple_repeat 1 98 0 2 1188 225 0 0 0 chr4 79151811 79151836 -76478284 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1188 241 232 0 28 chr4 79152392 79152463 -76477657 + T-rich Low_complexity Low_complexity 2 70 0 2 1188 334 370 27 7 chr4 79153291 79153438 -76476682 - Lx8 LINE L1 -144 7329 7180 2 1188 1131 109 5 34 chr4 79153496 79153704 -76476416 + MusHAL1 LINE L1 826 1027 -1685 2 1188 2111 110 41 5 chr4 79153689 79154056 -76476064 + MusHAL1 LINE L1 1703 2082 -630 2 1188 9463 70 8 7 chr4 79154226 79155557 -76474563 - L1Md_F2 LINE L1 -2 6580 5252 2 1188 804 77 0 0 chr4 79155557 79155674 -76474446 + (TA)n Simple_repeat Simple_repeat 2 118 0 2 1188 9463 80 15 0 chr4 79155674 79156314 -76473806 - L1Md_F2 LINE L1 -632 5251 4596 2 1188 2841 89 2 8 chr4 79156459 79156857 -76473263 - MTA_Mm LTR MaLR 0 396 1 2 1188 27 62 0 0 chr4 79157058 79157106 -76473014 + AT_rich Low_complexity Low_complexity 1 48 0 2 1188 461 337 72 41 chr4 79157164 79157455 -76472665 - Lx8 LINE L1 -300 7173 6874 2 1188 225 350 49 7 chr4 79157559 79157703 -76472417 - Lx8 LINE L1 -643 6830 6681 2 1188 1358 235 88 0 chr4 79157773 79158160 -76471960 - L1_Mur3 LINE L1 -736 5144 4724 2 1188 2923 80 0 12 chr4 79158188 79158594 -76471526 - L1Md_F2 LINE L1 -19 6563 6163 2 1188 26 74 0 0 chr4 79159156 79159210 -76470910 + AT_rich Low_complexity Low_complexity 1 54 0 2 1188 1632 109 8 23 chr4 79159292 79159554 -76470566 + L1_Mus4 LINE L1 6373 6630 -6 2 1188 30 27 0 0 chr4 79159610 79159647 -76470473 + AT_rich Low_complexity Low_complexity 1 37 0 2 1188 4937 73 0 6 chr4 79160555 79161203 -76468917 - L1Md_F2 LINE L1 -3 6579 5936 2 1188 36131 54 4 17 chr4 79161175 79166486 -76463634 - L1Md_F2 LINE L1 -11 5872 641 2 1188 271 249 79 98 chr4 79166494 79166708 -76463412 - Lx7 LINE L1 0 7696 7487 2 1188 189 0 0 0 chr4 79166735 79166756 -76463364 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1188 279 0 0 0 chr4 79166756 79166786 -76463334 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1189 207 300 0 32 chr4 79167521 79167614 -76462506 + CT-rich Low_complexity Low_complexity 4 93 0 2 1189 2435 139 2 14 chr4 79167869 79168284 -76461836 + Lx LINE L1 6243 6652 -2 2 1189 3425 241 23 49 chr4 79168316 79169300 -76460820 - Lx2B LINE L1 -2 6998 6040 2 1189 286 283 54 45 chr4 79171603 79171714 -76458406 + PB1D7 SINE Alu 3 114 -6 2 1189 203 221 14 14 chr4 79172279 79172348 -76457772 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1189 4306 76 0 2 chr4 79172448 79173030 -76457090 - L1Md_F2 LINE L1 -1649 4234 3654 2 1189 10011 74 1 7 chr4 79173028 79174381 -76455739 + L1Md_F2 LINE L1 4242 5586 -297 2 1189 8220 36 3 1 chr4 79174381 79175373 -76454747 + L1Md_F2 LINE L1 5587 6580 -2 2 1189 306 73 0 0 chr4 79175541 79175582 -76454538 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1189 184 29 0 103 chr4 79175762 79175801 -76454319 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1189 322 147 0 0 chr4 79175829 79175897 -76454223 + Lx LINE L1 6586 6653 -1 2 1189 238 227 71 20 chr4 79176033 79176132 -76453988 + Lx9 LINE L1 7534 7637 -7 2 1189 447 19 0 0 chr4 79176594 79176646 -76453474 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1189 181 273 0 0 chr4 79177492 79177536 -76452584 + MIR3 SINE MIR 164 207 -1 2 1189 414 0 0 0 chr4 79177610 79177656 -76452464 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1189 546 16 0 0 chr4 79177656 79177718 -76452402 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1189 180 77 0 0 chr4 79177811 79177837 -76452283 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 2 1189 398 302 124 34 chr4 79177968 79178201 -76451919 - MER92B LTR ERV1 -381 255 2 2 1189 528 16 0 0 chr4 79178776 79178837 -76451283 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1189 228 238 47 19 chr4 79178842 79178949 -76451171 + (TA)n Simple_repeat Simple_repeat 2 111 0 2 1189 249 409 27 0 chr4 79179168 79179278 -76450842 + B4A SINE B4 11 123 -169 2 1189 25 0 0 0 chr4 79179706 79179731 -76450389 + AT_rich Low_complexity Low_complexity 1 25 0 2 1189 24 53 0 0 chr4 79179929 79179967 -76450153 + AT_rich Low_complexity Low_complexity 1 38 0 2 1189 433 268 128 132 chr4 79180215 79180434 -76449686 - MER67C LTR ERV1 -456 255 20 2 1189 22 0 0 0 chr4 79180697 79180719 -76449401 + AT_rich Low_complexity Low_complexity 1 22 0 2 1189 294 171 0 0 chr4 79180758 79180828 -76449292 + (TCTCTG)n Simple_repeat Simple_repeat 2 71 0 2 1189 345 24 0 0 chr4 79180829 79180871 -76449249 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1189 296 337 0 0 chr4 79180886 79180984 -76449136 + Lx8 LINE L1 6859 6956 -517 2 1189 439 333 119 40 chr4 79181350 79181703 -76448417 + Lx8 LINE L1 6961 7341 -132 2 1189 25 51 0 0 chr4 79181787 79181826 -76448294 + AT_rich Low_complexity Low_complexity 1 39 0 2 1189 827 220 53 151 chr4 79183189 79183601 -76446519 - RMER17C LTR ERVK -35 375 4 2 1189 21 36 0 0 chr4 79183645 79183673 -76446447 + AT_rich Low_complexity Low_complexity 1 28 0 2 1189 1078 264 55 19 chr4 79183904 79184283 -76445837 + L1_Rod LINE L1 5455 5847 0 2 1189 3471 57 2 0 chr4 79184496 79184936 -76445184 + L1Md_F2 LINE L1 5146 5586 -297 2 1189 7852 56 1 0 chr4 79184936 79185919 -76444201 + L1Md_F2 LINE L1 5587 6570 -12 2 1189 204 40 0 0 chr4 79186008 79186033 -76444087 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1189 285 303 0 0 chr4 79186034 79186123 -76443997 - Lx9 LINE L1 -1116 6528 6440 2 1189 534 215 0 0 chr4 79186123 79186253 -76443867 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 1189 3257 162 8 61 chr4 79186380 79186727 -76443393 - Lx2A LINE L1 -806 6202 5865 2 1189 474 33 0 0 chr4 79186727 79186787 -76443333 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1189 3257 171 6 43 chr4 79186787 79187299 -76442821 - Lx2A LINE L1 -1144 5864 5379 2 1189 2839 167 129 67 chr4 79187299 79187981 -76442139 + Lx2A LINE L1 6284 7007 -1 2 1189 2986 92 103 35 chr4 79188455 79188941 -76441179 - MURVY-LTR LTR ERV1 0 519 1 2 1189 54 29 0 0 chr4 79189042 79189110 -76441010 + AT_rich Low_complexity Low_complexity 1 68 0 2 1189 380 318 58 33 chr4 79189903 79190144 -76439976 - L1M2 LINE L1 -644 5656 5410 2 1189 33 25 0 0 chr4 79190188 79190228 -76439892 + AT_rich Low_complexity Low_complexity 1 40 0 2 1189 354 253 31 73 chr4 79190251 79190430 -76439690 - Lx9 LINE L1 -159 7485 7312 2 1189 399 21 0 0 chr4 79190430 79190478 -76439642 + (TTG)n Simple_repeat Simple_repeat 2 49 0 2 1189 354 253 31 73 chr4 79190478 79190490 -76439630 - Lx9 LINE L1 -333 7311 7302 2 1189 337 281 111 0 chr4 79190491 79190626 -76439494 + Lx9 LINE L1 6809 6958 -686 2 1189 312 336 135 47 chr4 79190626 79191048 -76439072 - L1M2 LINE L1 -758 5385 4927 2 1189 1188 215 52 9 chr4 79191049 79191378 -76438742 + L1_Mur3 LINE L1 3829 4171 -1709 2 1189 6082 124 10 62 chr4 79191370 79191791 -76438329 - L1_Mur1 LINE L1 -263 5623 5258 2 1189 1148 87 0 0 chr4 79191791 79191952 -76438168 - L1_Mus2 LINE L1 -1 6565 6405 2 1189 6082 124 10 62 chr4 79191952 79192633 -76437487 - L1_Mur1 LINE L1 -629 5257 4578 2 1189 7982 146 29 31 chr4 79192628 79194032 -76436088 + Lx3_Mus LINE L1 5610 7009 0 2 1189 5079 272 25 31 chr4 79194041 79195545 -76434575 - Lx6 LINE L1 -177 7283 5789 2 1189 1772 167 65 0 chr4 79197559 79197865 -76432255 - ORR1A3 LTR MaLR 0 326 1 2 1189 350 263 0 10 chr4 79197987 79198087 -76432033 + L1_Rod LINE L1 5109 5207 -640 2 1189 185 122 0 47 chr4 79198144 79198187 -76431933 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 2 1189 304 348 9 0 chr4 79198187 79198302 -76431818 + Lx9 LINE L1 7343 7458 -186 2 1189 501 47 0 0 chr4 79198303 79198367 -76431753 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1189 816 307 38 70 chr4 79198430 79198974 -76431146 + L1_Rod LINE L1 5238 5821 -353 2 1189 1117 351 92 23 chr4 79198982 79199794 -76430326 + Lx9 LINE L1 6423 7290 -354 2 1189 423 0 0 0 chr4 79199830 79199877 -76430243 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1189 180 97 0 0 chr4 79199879 79199910 -76430210 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1189 207 0 0 0 chr4 79199911 79199934 -76430186 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 1189 25 0 0 0 chr4 79200067 79200092 -76430028 + AT_rich Low_complexity Low_complexity 1 25 0 3 1189 40863 8 0 1 chr4 79200192 79206772 -76423348 + L1Md_A LINE L1 1 6370 -212 3 1189 2949 21 0 0 chr4 79206772 79207109 -76423011 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1189 23068 28 11 10 chr4 79207109 79209850 -76420270 + IAPEz-int LTR ERVK 8 2751 -3730 3 1189 29174 10 2 0 chr4 79209842 79213074 -76417046 + IAPEz-int LTR ERVK 3244 6481 0 3 1189 2957 21 0 0 chr4 79213074 79213411 -76416709 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1189 1887 14 0 0 chr4 79213411 79213629 -76416491 + L1Md_A LINE L1 6365 6582 0 3 1189 35 0 0 0 chr4 79214772 79214807 -76415313 + AT_rich Low_complexity Low_complexity 1 35 0 3 1189 197 33 33 0 chr4 79215334 79215364 -76414756 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 1189 252 321 90 56 chr4 79215504 79215771 -76414349 - Lx8 LINE L1 -293 7180 6905 3 1189 345 24 0 0 chr4 79215781 79215823 -76414297 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1189 515 228 91 45 chr4 79215882 79216125 -76413995 - Lx7 LINE L1 -1 7695 7442 3 1189 264 91 0 0 chr4 79216126 79216170 -76413950 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1189 720 275 36 22 chr4 79216672 79217025 -76413095 + L1_Mur2 LINE L1 894 1251 -6477 3 1189 8065 102 8 21 chr4 79217025 79219097 -76411023 + L1_Mus1 LINE L1 4534 6567 0 3 1189 11221 22 0 0 chr4 79221332 79222643 -76407477 + L1Md_T LINE L1 4276 5586 -297 3 1189 8413 33 0 0 chr4 79222643 79223639 -76406481 + L1Md_T LINE L1 5587 6582 0 3 1189 476 237 3 16 chr4 79223646 79223829 -76406291 + L1_Mur2 LINE L1 5283 5436 -411 3 1189 4820 113 29 146 chr4 79223830 79224915 -76405205 + L1_Mur1 LINE L1 4632 5589 -297 3 1189 8990 2 1 0 chr4 79224915 79225910 -76404210 + L1Md_A LINE L1 5587 6582 0 3 1189 1532 190 27 204 chr4 79225910 79226914 -76403206 + Lx5 LINE L1 5306 6098 -952 3 1189 1733 230 116 47 chr4 79226963 79227557 -76402563 + RMER6C LTR ERVK 1 636 -54 3 1189 416 292 38 69 chr4 79227557 79227818 -76402302 - RLTR15 LTR ERVK -1 358 106 3 1189 471 307 167 76 chr4 79228008 79228350 -76401770 + ORR1D2 LTR MaLR 22 394 0 3 1189 225 273 161 49 chr4 79228370 79228674 -76401446 + L1M2 LINE L1 4578 4915 -1228 3 1189 21358 63 1 1 chr4 79229899 79233406 -76396714 - L1Md_F2 LINE L1 -1 6581 3076 3 1189 232 352 42 0 chr4 79233543 79233614 -76396506 - RSINE1 SINE B4 -87 78 5 3 1189 524 300 35 16 chr4 79233994 79234309 -76395811 - L1MA4 LINE L1 -415 5885 5565 3 1189 22 35 0 0 chr4 79234351 79234380 -76395740 + AT_rich Low_complexity Low_complexity 1 29 0 3 1189 1234 266 96 21 chr4 79234381 79234807 -76395313 - Lx2B LINE L1 0 7000 6543 3 1189 387 377 0 25 chr4 79234868 79235026 -76395094 + RSINE1 SINE B4 12 165 0 3 1189 685 176 19 19 chr4 79235612 79235768 -76394352 + L1_Mm LINE L1 4999 5154 -729 3 1189 628 241 0 0 chr4 79235765 79235902 -76394218 + Lx5 LINE L1 6734 6870 -180 3 1189 3143 164 11 2 chr4 79236090 79236620 -76393500 - Lx3A LINE L1 -44 6937 6403 3 1189 3063 44 18 0 chr4 79236643 79236859 -76393261 - MTA_Mm LTR MaLR 0 396 180 3 1189 2642 81 11 13 chr4 79236859 79237237 -76392883 - L1Md_F2 LINE L1 0 6582 6206 3 1189 3063 44 18 0 chr4 79237237 79237409 -76392711 - MTA_Mm LTR MaLR -217 179 3 3 1189 796 140 35 0 chr4 79237410 79237553 -76392567 - L1_Mur1 LINE L1 -951 4935 4788 3 1189 876 260 15 57 chr4 79237615 79237946 -76392174 + Lx7 LINE L1 7364 7680 -16 3 1189 236 232 14 14 chr4 79237997 79238067 -76392053 - L1_Mur3 LINE L1 -910 4970 4901 3 1189 963 293 65 11 chr4 79238589 79238865 -76391255 - MTD LTR MaLR 0 419 129 3 1189 558 274 50 65 chr4 79239024 79239223 -76390897 + B3 SINE B2 20 215 -1 3 1189 1067 319 96 29 chr4 79239401 79240097 -76390023 + Lx8 LINE L1 6141 6883 -590 3 1189 452 304 119 37 chr4 79240157 79240322 -76389798 + Charlie5 DNA MER1_type 1651 1822 -802 3 1189 216 0 0 0 chr4 79240322 79240346 -76389774 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 3 1189 452 304 119 37 chr4 79240346 79240590 -76389530 + Charlie5 DNA MER1_type 1823 2094 -530 3 1189 249 246 130 29 chr4 79240782 79240920 -76389200 + Charlie5 DNA MER1_type 2469 2620 -4 3 1189 303 93 0 0 chr4 79241540 79241583 -76388537 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1189 268 329 0 0 chr4 79241921 79242006 -76388114 + Lx7 LINE L1 6811 6895 -801 3 1189 478 211 136 16 chr4 79242263 79242388 -76387732 - MTC LTR MaLR -277 144 5 3 1189 2027 244 52 77 chr4 79242393 79243031 -76387089 - MTC-int LTR MaLR -19 1239 618 3 1189 4138 176 47 6 chr4 79243097 79243907 -76386213 + Lx2B LINE L1 6158 7000 0 3 1189 312 294 57 44 chr4 79243915 79244150 -76385970 + MuRRS4-int LTR ERV1 2890 3117 -1946 3 1189 1090 295 60 63 chr4 79244784 79245247 -76384873 + ORR1D-int LTR MaLR 277 738 -632 3 1189 375 23 0 0 chr4 79245671 79245715 -76384405 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1189 288 0 0 0 chr4 79245715 79245746 -76384374 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1189 1053 96 7 7 chr4 79245907 79246054 -76384066 + B1_Mus1 SINE Alu 1 147 -1 3 1189 260 83 0 20 chr4 79246063 79246112 -76384008 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 3 1189 414 149 0 0 chr4 79246100 79246187 -76383933 + (GAAA)n Simple_repeat Simple_repeat 3 89 0 3 1189 857 105 26 0 chr4 79246187 79246340 -76383780 + (GAAAA)n Simple_repeat Simple_repeat 3 159 0 3 1189 23 0 0 0 chr4 79247117 79247140 -76382980 + AT_rich Low_complexity Low_complexity 1 23 0 3 1189 23 0 0 0 chr4 79247300 79247323 -76382797 + AT_rich Low_complexity Low_complexity 1 23 0 3 1189 483 250 138 14 chr4 79247331 79247469 -76382651 - Lx8 LINE L1 -150 7323 7169 3 1189 241 358 73 9 chr4 79247502 79247612 -76382508 - Lx8 LINE L1 -885 6588 6472 3 1189 1760 130 86 0 chr4 79247621 79247922 -76382198 + IAPEY3_LTR LTR ERVK 1 327 -5 3 1189 458 361 0 0 chr4 79248002 79248146 -76381974 - Lx8 LINE L1 -1107 6366 6223 3 1189 804 319 53 0 chr4 79248556 79248876 -76381244 - Lx7 LINE L1 -1767 5929 5593 3 1189 1098 23 0 0 chr4 79248899 79249028 -76381092 + (TTC)n Simple_repeat Simple_repeat 1 129 0 3 1189 699 65 0 0 chr4 79249156 79249249 -76380871 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 3 1189 393 178 257 0 chr4 79249274 79249375 -76380745 - B2_Mm2 SINE B2 -66 129 3 3 1189 418 311 159 3 chr4 79249399 79249540 -76380580 + B3A SINE B2 1 160 -56 3 1189 360 0 0 0 chr4 79249540 79249580 -76380540 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1189 594 0 0 0 chr4 79249580 79249646 -76380474 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1189 406 324 138 23 chr4 79249646 79249677 -76380443 + B3 SINE B2 161 193 -23 3 1189 339 25 0 0 chr4 79249751 79249791 -76380329 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1189 661 130 0 31 chr4 79249854 79249981 -76380139 + (TATG)n Simple_repeat Simple_repeat 2 124 0 3 1189 21 0 0 0 chr4 79250363 79250384 -76379736 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 29 0 0 0 chr4 79250529 79250558 -76379562 + AT_rich Low_complexity Low_complexity 1 29 0 3 1189 1076 325 83 24 chr4 79250634 79251062 -76379058 + Lx9 LINE L1 6666 7103 -541 3 1189 1773 83 4 19 chr4 79251062 79251319 -76378801 + L1Md_F2 LINE L1 6328 6580 -2 3 1189 1076 325 83 24 chr4 79251319 79251551 -76378569 + Lx9 LINE L1 7104 7367 -277 3 1189 522 0 0 0 chr4 79251551 79251609 -76378511 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1189 1076 325 83 24 chr4 79251609 79251624 -76378496 + Lx9 LINE L1 7368 7381 -263 3 1189 567 85 0 0 chr4 79252206 79252288 -76377832 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1189 22 35 0 0 chr4 79253141 79253170 -76376950 + AT_rich Low_complexity Low_complexity 1 29 0 3 1189 639 266 91 17 chr4 79253714 79253955 -76376165 - Lx7 LINE L1 -1664 6032 5774 3 1189 228 312 23 8 chr4 79255064 79255193 -76374927 + (TA)n Simple_repeat Simple_repeat 2 132 0 3 1189 375 262 0 0 chr4 79255229 79255374 -76374746 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 1189 187 245 0 41 chr4 79255368 79255394 -76374726 + (CATA)n Simple_repeat Simple_repeat 2 25 0 3 1189 731 97 9 0 chr4 79255394 79255508 -76374612 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 3 1189 187 245 0 41 chr4 79255508 79255579 -76374541 + (CATA)n Simple_repeat Simple_repeat 2 70 0 3 1189 2176 178 14 11 chr4 79255636 79256074 -76374046 - Lx2 LINE L1 -2 6995 6557 3 1189 22871 171 31 15 chr4 79256074 79257867 -76372253 - Lx2 LINE L1 -572 6425 4622 3 1189 2658 135 25 2 chr4 79257867 79258304 -76371816 + L1_Mus3 LINE L1 6192 6638 0 3 1189 22871 177 26 9 chr4 79258304 79259717 -76370403 - Lx2 LINE L1 -1265 4621 3165 3 1189 243 0 0 0 chr4 79259717 79259744 -76370376 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1189 22871 177 28 18 chr4 79259744 79261964 -76368156 - Lx2 LINE L1 -2722 3164 939 3 1189 2201 134 3 11 chr4 79261964 79262334 -76367786 - L1_Mus3 LINE L1 -4 6634 6268 3 1189 2857 180 35 70 chr4 79262334 79262623 -76367497 - Lx2 LINE L1 -5696 938 644 3 1189 249 163 0 0 chr4 79262747 79262796 -76367324 + (CATA)n Simple_repeat Simple_repeat 4 52 0 3 1189 198 0 0 0 chr4 79263433 79263455 -76366665 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 3 1189 904 264 45 91 chr4 79263490 79263773 -76366347 - Lx9 LINE L1 -230 7414 7144 3 1189 222 62 0 0 chr4 79263773 79263805 -76366315 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1189 904 264 45 91 chr4 79263805 79263892 -76366228 - Lx9 LINE L1 -501 7143 7062 3 1189 739 112 0 7 chr4 79263892 79264027 -76366093 - L1Md_F2 LINE L1 0 6582 6449 3 1189 904 264 45 91 chr4 79264027 79264075 -76366045 - Lx9 LINE L1 -583 7061 7015 3 1189 332 281 10 0 chr4 79264303 79264399 -76365721 + MERVL_2A-int LTR ERVL 3478 3574 -2187 3 1189 55 16 0 0 chr4 79264400 79264462 -76365658 + AT_rich Low_complexity Low_complexity 1 62 0 3 1189 2003 302 25 38 chr4 79264513 79265354 -76364766 + MERVL_2A-int LTR ERVL 4731 5560 -201 3 1189 198 208 0 0 chr4 79266361 79266414 -76363706 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1189 4542 108 37 21 chr4 79266418 79267140 -76362980 - L1_Mus4 LINE L1 -21 6615 5885 3 1189 211 196 0 35 chr4 79267189 79267247 -76362873 + A-rich Low_complexity Low_complexity 1 56 0 3 1189 229 271 96 52 chr4 79267686 79267822 -76362298 - MER110A LTR ERV1 -4 464 323 3 1189 1408 194 6 72 chr4 79267887 79268236 -76361884 + ORR1A2 LTR MaLR 1 326 -1 3 1189 315 87 0 92 chr4 79268384 79268460 -76361660 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 3 1189 885 260 29 29 chr4 79268612 79268854 -76361266 + Lx6 LINE L1 6145 6386 -1074 3 1189 6901 214 242 20 chr4 79268865 79269554 -76360566 - L1_Mur2 LINE L1 -1621 4256 3480 3 1189 1101 94 0 27 chr4 79269554 79269739 -76360381 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1189 6901 213 196 16 chr4 79269739 79271761 -76358359 - L1_Mur2 LINE L1 -2398 3479 919 3 1189 393 22 0 0 chr4 79272303 79272349 -76357771 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1189 503 129 12 0 chr4 79273727 79273812 -76356308 + L1_Mus2 LINE L1 6481 6566 0 3 1189 32969 16 1 5 chr4 79273825 79279197 -76350923 + L1Md_A LINE L1 254 5585 -298 3 1189 8590 23 0 1 chr4 79279198 79280195 -76349925 + L1Md_A LINE L1 5587 6582 0 3 1189 34 96 0 0 chr4 79280557 79280661 -76349459 + AT_rich Low_complexity Low_complexity 1 104 0 3 1189 1003 182 60 8 chr4 79280925 79281168 -76348952 + Lx3A LINE L1 6742 7009 0 3 1189 1919 149 19 28 chr4 79281373 79281732 -76348388 + Lx LINE L1 6292 6647 -7 4 1189 400 319 71 36 chr4 79282663 79282803 -76347317 + RSINE1 SINE B4 2 146 -19 4 1189 255 175 0 0 chr4 79282824 79282881 -76347239 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1189 243 79 0 0 chr4 79282915 79282953 -76347167 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1189 318 365 69 35 chr4 79282953 79283126 -76346994 + B4A SINE B4 114 292 0 4 1189 233 184 0 20 chr4 79283171 79283221 -76346899 - L1Md_F3 LINE L1 -792 5792 5744 4 1189 450 172 0 0 chr4 79283252 79283351 -76346769 + T-rich Low_complexity Low_complexity 1 99 0 4 1189 867 86 156 0 chr4 79283351 79283479 -76346641 - B1_Mus1 SINE Alu 0 148 1 4 1189 798 11 0 0 chr4 79283483 79283574 -76346546 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 4 1189 701 315 111 48 chr4 79283638 79284135 -76345985 - Lx8 LINE L1 -31 7442 6915 4 1189 279 260 61 8 chr4 79285043 79285175 -76344945 - L1MA7 LINE L1 -54 6237 6099 4 1189 761 238 108 58 chr4 79285373 79285614 -76344506 - RLTR13D6 LTR ERVK 0 1023 771 4 1189 1225 177 0 5 chr4 79285627 79285837 -76344283 - RLTR13D6 LTR ERVK -692 210 2 4 1189 198 0 0 0 chr4 79285846 79285868 -76344252 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1189 6888 110 19 5 chr4 79285937 79286722 -76343398 - L1_Mus3 LINE L1 -7 6631 5831 4 1189 3007 118 101 30 chr4 79286722 79287249 -76342871 + LTRIS2 LTR ERV1 1 564 0 4 1189 6888 118 16 9 chr4 79287249 79287789 -76342331 - L1_Mus3 LINE L1 -53 5830 5286 4 1189 2477 114 10 0 chr4 79287785 79288179 -76341941 + L1_Mm LINE L1 2023 2420 -3463 4 1189 351 269 21 14 chr4 79288625 79288768 -76341352 + (TA)n Simple_repeat Simple_repeat 1 144 0 4 1189 680 243 27 80 chr4 79289021 79289338 -76340782 + L1_Rod LINE L1 4961 5320 -823 4 1189 1185 82 0 0 chr4 79289348 79289495 -76340625 + B1_Mus2 SINE Alu 1 147 0 4 1189 3381 226 72 2 chr4 79289516 79290376 -76339744 - Lx5 LINE L1 -144 5733 4814 4 1189 4949 247 32 28 chr4 79290369 79291137 -76338983 + Lx5 LINE L1 5807 6599 -451 4 1189 3141 89 5 0 chr4 79291137 79291575 -76338545 + L1Md_T LINE L1 6142 6581 -1 4 1189 4949 247 32 28 chr4 79291575 79292042 -76338078 + Lx5 LINE L1 6600 7047 -3 4 1189 579 318 96 27 chr4 79292345 79292529 -76337591 - L1_Mur3 LINE L1 -12 5868 5671 4 1189 504 0 0 0 chr4 79292529 79292585 -76337535 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1189 588 287 46 31 chr4 79292585 79292921 -76337199 - L1_Mur3 LINE L1 -210 5670 5314 4 1189 25 75 0 0 chr4 79293315 79293368 -76336752 + AT_rich Low_complexity Low_complexity 1 53 0 4 1189 1013 276 14 31 chr4 79293368 79293656 -76336464 - Lx6 LINE L1 -30 7430 7148 4 1189 22 35 0 0 chr4 79295040 79295069 -76335051 + AT_rich Low_complexity Low_complexity 1 29 0 4 1189 23 33 0 0 chr4 79295651 79295681 -76334439 + AT_rich Low_complexity Low_complexity 1 30 0 4 1189 394 305 126 44 chr4 79295765 79296036 -76334084 + L1MC LINE L1 4996 5288 -858 4 1189 464 334 93 28 chr4 79296037 79296434 -76333686 + L1_Mur3 LINE L1 135 557 -7171 4 1189 1277 220 66 88 chr4 79296456 79297215 -76332905 + L1_Mur3 LINE L1 874 1614 -4266 4 1189 263 238 0 0 chr4 79297215 79297278 -76332842 + CT-rich Low_complexity Low_complexity 1 63 0 4 1189 1757 170 34 11 chr4 79297296 79297653 -76332467 + L1_Mur3 LINE L1 2067 2431 -3449 4 1189 1104 272 11 8 chr4 79297773 79298036 -76332084 + Lx6 LINE L1 7007 7270 -190 4 1189 296 392 51 35 chr4 79298212 79298466 -76331654 + L1M3de LINE L1 1177 1434 -5219 4 1190 360 0 0 0 chr4 79299607 79299647 -76330473 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1190 355 399 62 25 chr4 79300099 79300172 -76329948 + B4 SINE B4 5 79 -213 4 1190 324 70 0 0 chr4 79300172 79300215 -76329905 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 4 1190 355 399 62 25 chr4 79300215 79300416 -76329704 + B4 SINE B4 80 289 -3 4 1190 429 20 0 0 chr4 79300480 79300530 -76329590 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1190 927 97 0 0 chr4 79300556 79300710 -76329410 + (GA)n Simple_repeat Simple_repeat 1 154 0 4 1190 253 238 62 54 chr4 79300960 79301104 -76329016 - LTR37A LTR ERV1 -33 435 307 4 1190 833 275 9 19 chr4 79301094 79301305 -76328815 + B3 SINE B2 8 216 0 4 1190 2208 38 0 0 chr4 79301337 79301602 -76328518 - L1Md_T LINE L1 -1 6581 6317 4 1190 527 273 44 139 chr4 79302125 79302419 -76327701 - Lx7 LINE L1 -1703 5993 5728 4 1190 1170 100 0 0 chr4 79302437 79302617 -76327503 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1190 198 135 0 0 chr4 79302617 79302634 -76327486 + (T)n Simple_repeat Simple_repeat 1 17 0 4 1190 1157 68 7 0 chr4 79302634 79302781 -76327339 - B1_Mus1 SINE Alu 0 148 1 4 1190 198 135 0 0 chr4 79302781 79302800 -76327320 + (T)n Simple_repeat Simple_repeat 1 19 0 4 1190 322 225 70 0 chr4 79302807 79302878 -76327242 - Lx7 LINE L1 -1991 5705 5630 4 1190 1086 238 177 17 chr4 79302872 79303406 -76326714 + L1_Rod LINE L1 1042 1661 -4186 4 1190 393 245 36 48 chr4 79303526 79303693 -76326427 + RLTR15 LTR ERVK 158 322 -37 4 1190 675 67 0 0 chr4 79304282 79304371 -76325749 + (TAG)n Simple_repeat Simple_repeat 1 89 0 4 1190 508 171 0 18 chr4 79304373 79304455 -76325665 + polypurine Low_complexity Low_complexity 2 83 0 4 1190 1014 120 17 0 chr4 79304455 79304630 -76325490 + (GGA)n Simple_repeat Simple_repeat 1 178 0 4 1190 508 171 0 18 chr4 79304630 79304660 -76325460 + polypurine Low_complexity Low_complexity 84 112 0 4 1190 1599 20 0 0 chr4 79304667 79305219 -76324901 + (GAA)n Simple_repeat Simple_repeat 1 552 0 4 1190 438 108 0 0 chr4 79305286 79305351 -76324769 + (CAA)n Simple_repeat Simple_repeat 2 66 0 4 1190 618 284 72 69 chr4 79305479 79305868 -76324252 + MYSERV-int LTR ERVK 3775 4164 -2386 4 1190 1648 308 59 47 chr4 79305882 79306836 -76323284 + MYSERV-int LTR ERVK 4195 5159 -1391 4 1190 301 273 80 7 chr4 79306887 79307001 -76323119 + RMER4B LTR ERVK 345 565 -20 4 1190 26859 141 18 8 chr4 79307123 79312528 -76317592 - L1_Mus3 LINE L1 -11 6627 1159 4 1190 315 0 0 0 chr4 79312528 79312563 -76317557 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1190 3073 228 28 14 chr4 79312563 79313207 -76316913 - L1_Mus3 LINE L1 -5499 1158 609 4 1190 651 240 124 36 chr4 79313253 79313570 -76316550 + Lx9 LINE L1 5637 6048 -1596 4 1190 1978 282 21 33 chr4 79313673 79314281 -76315839 + Lx9 LINE L1 6300 6900 -744 4 1190 785 218 35 25 chr4 79314267 79314465 -76315655 + Lx5 LINE L1 6648 6847 -203 4 1190 372 297 23 19 chr4 79315726 79315942 -76314178 - L1_Mur3 LINE L1 -3 5877 5661 4 1190 215 204 0 0 chr4 79316782 79316826 -76313294 + (CAG)n Simple_repeat Simple_repeat 1 44 0 4 1190 706 10 48 0 chr4 79316982 79317085 -76313035 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 1190 304 200 41 8 chr4 79317085 79317206 -76312914 + Lx9 LINE L1 7519 7643 -1 4 1190 572 188 15 22 chr4 79317436 79317572 -76312548 - Lx4A LINE L1 -11 7047 6913 4 1190 691 241 157 8 chr4 79317577 79317806 -76312314 - Lx4A LINE L1 -817 6241 5979 4 1190 833 207 0 6 chr4 79317812 79317992 -76312128 + Lx4A LINE L1 5970 6148 -910 4 1190 884 115 0 0 chr4 79319013 79319152 -76310968 + L1_Mus2 LINE L1 6427 6565 -1 4 1190 291 303 77 44 chr4 79319175 79319358 -76310762 + B3A SINE B2 5 193 -5 4 1190 29 0 0 0 chr4 79319359 79319388 -76310732 + AT_rich Low_complexity Low_complexity 1 29 0 4 1190 27 29 0 0 chr4 79319427 79319461 -76310659 + AT_rich Low_complexity Low_complexity 1 34 0 4 1190 468 285 19 38 chr4 79319859 79320016 -76310104 + B3 SINE B2 63 216 0 4 1190 29 47 0 0 chr4 79320884 79320927 -76309193 + AT_rich Low_complexity Low_complexity 1 43 0 4 1190 22 0 0 0 chr4 79320968 79320990 -76309130 + AT_rich Low_complexity Low_complexity 1 22 0 4 1190 326 331 59 43 chr4 79320991 79321177 -76308943 - B3A SINE B2 -5 193 5 4 1190 24 0 0 0 chr4 79321272 79321296 -76308824 + AT_rich Low_complexity Low_complexity 1 24 0 4 1190 36 0 0 0 chr4 79322351 79322387 -76307733 + AT_rich Low_complexity Low_complexity 1 36 0 4 1190 363 73 0 0 chr4 79322757 79322812 -76307308 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1190 464 29 0 14 chr4 79323945 79324016 -76306104 - L1Md_F2 LINE L1 -2 6580 6511 4 1190 2553 87 3 0 chr4 79324422 79324827 -76305293 + L1_Mus1 LINE L1 6216 6567 0 4 1190 344 255 88 28 chr4 79325140 79325272 -76304848 + PB1D9 SINE Alu 14 149 -1 4 1190 702 35 0 0 chr4 79326110 79326195 -76303925 + (GA)n Simple_repeat Simple_repeat 1 85 0 4 1190 273 357 118 60 chr4 79326640 79326910 -76303210 + LTR78 LTR ERV1 922 1205 -99 4 1190 4307 200 26 38 chr4 79326910 79327826 -76302294 - RMER13B LTR ERVK 0 908 4 4 1190 273 357 118 60 chr4 79327826 79327904 -76302216 + LTR78 LTR ERV1 1206 1290 -14 4 1190 245 345 11 0 chr4 79328465 79328552 -76301568 + RSINE1 SINE B4 78 165 0 4 1190 705 53 0 0 chr4 79328582 79328676 -76301444 + (GA)n Simple_repeat Simple_repeat 2 95 0 4 1190 205 138 0 0 chr4 79329523 79329552 -76300568 + (CAA)n Simple_repeat Simple_repeat 3 31 0 4 1190 243 0 0 0 chr4 79329753 79329780 -76300340 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1190 240 256 124 55 chr4 79330118 79330263 -76299857 + L1MEd LINE L1 63 217 -5902 4 1190 446 347 112 28 chr4 79330473 79330796 -76299324 - MER74C LTR ERVL 0 460 111 4 1190 261 0 0 0 chr4 79331528 79331557 -76298563 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1190 857 290 135 34 chr4 79331561 79331886 -76298234 + ORR1D2 LTR MaLR 9 366 -4 4 1190 2144 275 57 14 chr4 79332164 79332890 -76297230 - Lx9 LINE L1 -7 7637 6881 4 1190 700 256 12 186 chr4 79332901 79333228 -76296892 - Lx9 LINE L1 -1069 6575 6306 4 1190 21 0 0 0 chr4 79333455 79333476 -76296644 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 264 380 0 0 chr4 79333685 79333785 -76296335 - Lx8 LINE L1 -193 7280 7181 4 1190 659 350 61 28 chr4 79333932 79334291 -76295829 + Lx8 LINE L1 6559 6929 -544 4 1190 186 118 0 0 chr4 79334346 79334380 -76295740 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4 1190 777 198 0 0 chr4 79334390 79334516 -76295604 - Lx5 LINE L1 -128 6922 6797 4 1190 1051 251 97 17 chr4 79334526 79334826 -76295294 - Lx5 LINE L1 -523 6527 6204 4 1190 276 222 0 0 chr4 79334822 79334876 -76295244 + Lx4B LINE L1 6177 6230 -828 4 1190 382 316 103 90 chr4 79334971 79335504 -76294616 + L1MEg LINE L1 686 1225 -4859 4 1190 1730 211 33 15 chr4 79336388 79337138 -76292982 + L1VL4 LINE L1 804 1582 -4295 4 1190 30 0 0 0 chr4 79337163 79337193 -76292927 + AT_rich Low_complexity Low_complexity 1 30 0 4 1190 195 42 0 0 chr4 79337240 79337264 -76292856 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1190 227 329 0 0 chr4 79337887 79337963 -76292157 - MTEb LTR MaLR -18 361 286 5 1190 21 0 0 0 chr4 79339365 79339386 -76290734 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 372 71 0 0 chr4 79339661 79339717 -76290403 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 5 1190 29 28 0 0 chr4 79342646 79342682 -76287438 + AT_rich Low_complexity Low_complexity 1 36 0 5 1190 24 32 0 0 chr4 79342850 79342881 -76287239 + AT_rich Low_complexity Low_complexity 1 31 0 5 1190 21 0 0 0 chr4 79344916 79344937 -76285183 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 25 95 0 0 chr4 79345209 79345283 -76284837 + AT_rich Low_complexity Low_complexity 1 74 0 5 1190 273 312 38 19 chr4 79345380 79345407 -76284713 - Lx9 LINE L1 -154 7490 7466 5 1190 297 0 0 0 chr4 79345407 79345440 -76284680 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1190 273 312 38 19 chr4 79345440 79345569 -76284551 - Lx9 LINE L1 -179 7465 7332 5 1190 406 306 56 8 chr4 79347795 79347920 -76282200 + Lx6 LINE L1 7151 7281 -179 5 1190 262 61 0 39 chr4 79347920 79347971 -76282149 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 5 1190 1622 226 31 39 chr4 79347979 79348394 -76281726 - Lx3C LINE L1 -24 6952 6541 5 1190 425 250 53 90 chr4 79348391 79348429 -76281691 + Lx6 LINE L1 7279 7315 -145 5 1190 869 36 18 0 chr4 79348429 79348541 -76281579 + (TTTTC)n Simple_repeat Simple_repeat 4 117 0 5 1190 425 250 53 90 chr4 79348541 79348553 -76281567 + Lx6 LINE L1 7316 7325 -135 5 1190 4293 71 51 38 chr4 79348553 79349183 -76280937 - L1Md_F2 LINE L1 -14 6568 5931 5 1190 425 250 53 90 chr4 79349183 79349320 -76280800 + Lx6 LINE L1 7326 7459 -1 5 1190 506 298 51 22 chr4 79351096 79351466 -76278654 + L1_Mur3 LINE L1 4194 4574 -1306 5 1190 309 51 0 0 chr4 79351494 79351533 -76278587 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 5 1190 2691 130 12 0 chr4 79351534 79351964 -76278156 - L1_Mus4 LINE L1 -16 6620 6186 5 1190 13070 123 42 13 chr4 79352075 79355303 -76274817 - Lx3_Mus LINE L1 -1 7008 3685 5 1190 1439 116 83 0 chr4 79355311 79355553 -76274567 - Lx3_Mus LINE L1 -2860 3026 2765 5 1190 498 17 0 0 chr4 79355564 79355623 -76274497 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1190 213 281 0 11 chr4 79355714 79355804 -76274316 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 1190 24 0 0 0 chr4 79357125 79357149 -76272971 + AT_rich Low_complexity Low_complexity 1 24 0 5 1190 194 81 27 0 chr4 79357713 79357750 -76272370 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1190 285 322 59 40 chr4 79357929 79358081 -76272039 + MLT1C LTR MaLR 271 425 -42 5 1190 321 308 27 34 chr4 79358521 79358669 -76271451 - L1M2 LINE L1 -1145 4998 4852 5 1190 268 292 83 30 chr4 79358669 79358934 -76271186 + Lx3C LINE L1 5130 5408 -472 5 1190 7086 160 37 9 chr4 79358909 79360191 -76269929 + Lx3C LINE L1 5652 6971 -5 5 1190 34967 85 9 18 chr4 79360195 79367000 -76263120 - L1Md_F2 LINE L1 0 6582 100 5 1190 254 262 19 10 chr4 79367023 79367127 -76262993 - L1VL1 LINE L1 -6317 105 1 5 1190 1795 332 96 25 chr4 79367142 79368199 -76261921 + Lx8 LINE L1 6189 7320 -153 5 1190 513 0 0 0 chr4 79368598 79368655 -76261465 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 5 1190 289 376 77 72 chr4 79370024 79370568 -76259552 - MLT2B3 LTR ERVL -3 551 5 5 1190 279 0 0 0 chr4 79370571 79370602 -76259518 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 5 1190 235 408 17 51 chr4 79370789 79370967 -76259153 - MTEa LTR MaLR -205 174 3 5 1190 31521 88 2 7 chr4 79370982 79376291 -76253829 + L1Md_F LINE L1 307 5586 -297 5 1190 7046 47 92 1 chr4 79376291 79377202 -76252918 + L1Md_F2 LINE L1 5587 6580 -2 5 1190 195 69 0 0 chr4 79377223 79377252 -76252868 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1190 2213 287 111 16 chr4 79377337 79378244 -76251876 + Lx7 LINE L1 6091 7083 -613 5 1190 864 153 38 5 chr4 79378350 79378534 -76251586 - Lx2A LINE L1 -3 7005 6816 5 1190 349 205 15 45 chr4 79378556 79378689 -76251431 + T-rich Low_complexity Low_complexity 2 130 0 5 1190 33 25 0 0 chr4 79378783 79378823 -76251297 + AT_rich Low_complexity Low_complexity 1 40 0 5 1190 252 301 74 14 chr4 79378987 79379135 -76250985 + L1MC5 LINE L1 7752 7908 -53 5 1190 522 261 13 0 chr4 79379153 79379306 -76250814 - L1M1 LINE L1 -487 5816 5662 5 1190 402 312 14 27 chr4 79379825 79379973 -76250147 + RSINE1 SINE B4 3 148 -17 5 1190 410 157 12 0 chr4 79379988 79380071 -76250049 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 1190 255 298 60 22 chr4 79380150 79380284 -76249836 + L1MC1 LINE L1 6116 6254 -79 5 1190 1069 74 0 0 chr4 79380645 79380780 -76249340 + B1_Mus1 SINE Alu 5 139 -9 5 1190 225 0 0 0 chr4 79380780 79380805 -76249315 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1190 4008 132 85 42 chr4 79381700 79382119 -76248001 + RMER17D2 LTR ERVK 1 455 -354 5 1190 603 0 0 0 chr4 79382119 79382186 -76247934 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1190 4008 132 85 42 chr4 79382186 79382542 -76247578 + RMER17D2 LTR ERVK 456 809 0 5 1190 612 0 0 0 chr4 79382736 79382804 -76247316 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1190 299 25 0 24 chr4 79383253 79383294 -76246826 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1190 33 43 0 0 chr4 79383323 79383370 -76246750 + AT_rich Low_complexity Low_complexity 1 47 0 5 1190 24 67 0 0 chr4 79383460 79383505 -76246615 + AT_rich Low_complexity Low_complexity 1 45 0 5 1190 331 348 25 46 chr4 79383590 79383828 -76246292 - ERVL-B4-int LTR ERVL -4145 1569 1337 5 1190 302 306 62 64 chr4 79384045 79384276 -76245844 - ERVL-B4-int LTR ERVL -4765 992 721 5 1190 2153 35 0 0 chr4 79384298 79384554 -76245566 + L1Md_A LINE L1 6327 6582 0 5 1190 285 306 120 25 chr4 79384871 79385112 -76245008 - ERVL-B4-int LTR ERVL -5438 276 13 5 1190 3553 148 54 7 chr4 79385273 79385954 -76244166 - L1_Mur1 LINE L1 -3884 2002 1290 5 1190 465 19 0 0 chr4 79386177 79386231 -76243889 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1190 211 150 49 16 chr4 79386237 79386298 -76243822 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1190 31 0 0 0 chr4 79386519 79386550 -76243570 + AT_rich Low_complexity Low_complexity 1 31 0 5 1190 1667 262 84 32 chr4 79387924 79388664 -76241456 - RMER1B Other Other -12 1054 186 5 1190 235 318 0 0 chr4 79388664 79388727 -76241393 + B3A SINE B2 1 63 -135 5 1190 8008 239 40 26 chr4 79388746 79390377 -76239743 - Lx5 LINE L1 0 7050 5393 5 1190 195 42 0 0 chr4 79390377 79390401 -76239719 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1190 8008 192 41 25 chr4 79390401 79390917 -76239203 - Lx5 LINE L1 -485 5392 4848 5 1190 1691 163 43 40 chr4 79390917 79391243 -76238877 - ORR1A2 LTR MaLR 0 327 1 5 1190 8008 192 41 25 chr4 79391243 79392013 -76238107 - Lx5 LINE L1 -1030 4847 4075 5 1190 2488 270 41 35 chr4 79392027 79392803 -76237317 - L1Md_F2 LINE L1 -11 7449 6669 5 1190 500 248 13 65 chr4 79392815 79392970 -76237150 + RLTR11B LTR ERVK 1 147 -306 5 1190 5402 100 3 0 chr4 79392970 79393730 -76236390 - L1_Mus2 LINE L1 -73 5810 5049 5 1190 4999 118 3 5 chr4 79393730 79394482 -76235638 + L1_Mus2 LINE L1 5816 6565 -1 5 1190 189 182 0 0 chr4 79394488 79394543 -76235577 + A-rich Low_complexity Low_complexity 1 55 0 5 1190 5278 114 10 11 chr4 79394600 79395772 -76234348 - L1Md_F2 LINE L1 -948 6512 5368 5 1190 388 225 38 15 chr4 79395791 79395922 -76234198 - L1_Rod LINE L1 -3254 2593 2460 5 1190 1661 250 132 32 chr4 79395930 79396558 -76233562 - Lx7 LINE L1 -1446 6250 5581 5 1190 332 330 0 0 chr4 79396905 79396999 -76233121 - Lx8 LINE L1 -1184 6289 6196 5 1190 475 311 30 22 chr4 79397328 79397463 -76232657 + B1_Mur2 SINE Alu 13 148 -1 5 1190 4725 116 29 11 chr4 79397768 79398491 -76231629 - Lx3_Mus LINE L1 -1 7008 6273 5 1190 25 31 0 0 chr4 79398493 79398525 -76231595 + AT_rich Low_complexity Low_complexity 1 32 0 5 1190 21 0 0 0 chr4 79399343 79399364 -76230756 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 249 33 0 0 chr4 79400109 79400139 -76229981 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1190 2476 254 81 8 chr4 79400964 79401589 -76228531 + RMER1A Other Other 102 904 -126 5 1190 588 14 0 0 chr4 79401589 79401658 -76228462 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1190 2476 253 89 7 chr4 79401658 79401767 -76228353 + RMER1A Other Other 905 1014 -16 5 1190 1914 267 64 81 chr4 79401762 79402731 -76227389 + L1_Mur3 LINE L1 1723 2675 -3205 5 1190 1369 230 32 18 chr4 79402747 79403088 -76227032 + ORR1B1 LTR MaLR 49 394 0 5 1190 225 261 57 0 chr4 79403090 79403178 -76226942 + L1_Mur3 LINE L1 2672 2764 -3116 5 1190 1211 242 115 48 chr4 79403173 79403720 -76226400 + L1_Mur3 LINE L1 4166 4749 -1131 5 1190 213 119 0 0 chr4 79404225 79404267 -76225853 + (CAT)n Simple_repeat Simple_repeat 3 44 0 5 1190 558 281 81 79 chr4 79404564 79404970 -76225150 - Lx9 LINE L1 -450 7194 6788 5 1190 590 39 13 0 chr4 79405394 79405471 -76224649 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 1190 387 0 0 0 chr4 79405627 79405670 -76224450 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1190 4743 135 36 25 chr4 79405871 79406714 -76223406 - Lx3_Mus LINE L1 -16 6993 6142 5 1190 1951 95 56 0 chr4 79406714 79407020 -76223100 + Lx3_Mus LINE L1 5814 6136 -873 5 1190 253 278 0 0 chr4 79408009 79408063 -76222057 - Lx9 LINE L1 -994 6650 6597 5 1190 3257 160 11 18 chr4 79408143 79408716 -76221404 - Lx2A1 LINE L1 -3 7005 6437 5 1190 34 46 0 15 chr4 79408720 79408747 -76221373 + AT_rich Low_complexity Low_complexity 1 27 0 5 1190 494 274 108 0 chr4 79408747 79408933 -76221187 + B3 SINE B2 2 207 -9 5 1190 34 46 0 15 chr4 79408933 79408971 -76221149 + AT_rich Low_complexity Low_complexity 1 38 0 5 1190 25 65 0 0 chr4 79409675 79409721 -76220399 + AT_rich Low_complexity Low_complexity 1 46 0 5 1190 345 259 12 0 chr4 79409805 79409890 -76220230 - L1_Mur2 LINE L1 -427 5450 5365 5 1190 4483 175 31 11 chr4 79409901 79410481 -76219639 - L1_Mur2 LINE L1 -1015 4862 4268 5 1190 333 68 0 0 chr4 79410481 79410525 -76219595 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1190 4483 175 31 11 chr4 79410525 79410841 -76219279 - L1_Mur2 LINE L1 -1610 4267 3949 5 1190 396 352 9 0 chr4 79410841 79410949 -76219171 - RMER13B LTR ERVK 0 908 800 5 1190 1222 204 57 38 chr4 79410948 79411213 -76218907 - RMER13B LTR ERVK -634 274 5 5 1190 3053 175 33 25 chr4 79411221 79411911 -76218209 - L1_Mur2 LINE L1 -1930 3947 3252 5 1190 1250 169 11 19 chr4 79411909 79412217 -76217903 + L1_Mur2 LINE L1 2964 3271 -643 5 1190 2307 142 77 0 chr4 79412513 79412930 -76217190 + RLTR47_MM LTR ERV1 1 449 -83 5 1190 246 105 0 0 chr4 79412991 79413029 -76217091 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1190 269 176 14 14 chr4 79413532 79413601 -76216519 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 5 1190 525 71 0 0 chr4 79413854 79413924 -76216196 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 1190 252 100 0 0 chr4 79414822 79414862 -76215258 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1190 28394 107 10 65 chr4 79415075 79419311 -76210809 + L1Md_F2 LINE L1 202 4426 -1457 6 1190 2250 70 30 0 chr4 79419311 79419610 -76210510 + IAPLTR2b LTR ERVK 1 308 -19 6 1190 28394 107 10 65 chr4 79419610 79420771 -76209349 + L1Md_F2 LINE L1 4427 5586 -297 6 1190 7438 80 3 0 chr4 79420771 79421760 -76208360 + L1Md_F2 LINE L1 5587 6578 -4 6 1190 590 307 118 45 chr4 79422754 79422791 -76207329 - L1MC1 LINE L1 -245 6088 6054 6 1190 4055 62 6 2 chr4 79422791 79423309 -76206811 + L1Md_F2 LINE L1 6062 6581 -1 6 1190 590 307 118 45 chr4 79423309 79423913 -76206207 - L1MC1 LINE L1 -280 6053 5400 6 1190 314 389 77 45 chr4 79423948 79424258 -76205862 - ORR1D2 LTR MaLR -8 362 43 6 1190 450 0 0 0 chr4 79424350 79424400 -76205720 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1190 600 96 0 0 chr4 79424402 79424485 -76205635 - B1_Mus2 SINE Alu -6 141 59 6 1190 239 339 98 28 chr4 79424577 79425336 -76204784 - L1MC1 LINE L1 -1021 5125 4314 6 1190 1928 49 0 0 chr4 79425394 79425638 -76204482 - L1_Mm LINE L1 -1568 4315 4072 6 1190 1104 31 0 0 chr4 79425636 79425764 -76204356 + L1Md_F2 LINE L1 5459 5586 -297 6 1190 7883 53 3 6 chr4 79425765 79426763 -76203357 + L1Md_F2 LINE L1 5588 6582 0 6 1190 206 291 0 0 chr4 79426779 79426834 -76203286 + CT-rich Low_complexity Low_complexity 1 55 0 6 1190 4288 204 58 21 chr4 79427096 79428085 -76202035 - Lx2B LINE L1 0 7000 5976 6 1190 3324 165 48 2 chr4 79428077 79428818 -76201302 + Lx2B LINE L1 5171 5959 -1041 6 1191 26 30 0 0 chr4 79429690 79429723 -76200397 + AT_rich Low_complexity Low_complexity 1 33 0 6 1191 345 140 0 0 chr4 79430039 79430096 -76200024 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1191 839 174 7 0 chr4 79430205 79430354 -76199766 - ORR1A4-int LTR MaLR -1813 150 1 6 1191 1364 210 19 69 chr4 79430354 79430671 -76199449 - ORR1A4 LTR MaLR 0 329 29 6 1191 381 43 0 0 chr4 79431418 79431465 -76198655 + (TTA)n Simple_repeat Simple_repeat 3 49 0 6 1191 638 332 5 5 chr4 79431649 79431864 -76198256 + B3 SINE B2 2 216 0 6 1191 3615 187 60 60 chr4 79432343 79433401 -76196719 + L1VL2 LINE L1 90 1134 -2481 6 1191 4942 169 28 19 chr4 79433395 79434417 -76195703 + L1_Mur1 LINE L1 2782 3813 -2073 6 1191 1021 262 19 75 chr4 79434437 79434755 -76195365 - L1VL1 LINE L1 -5932 490 191 6 1191 382 313 154 30 chr4 79434784 79435018 -76195102 + Lx7 LINE L1 7059 7321 -375 6 1191 1138 329 20 34 chr4 79436620 79437406 -76192714 + Lx5 LINE L1 6208 6886 -574 6 1191 225 0 0 0 chr4 79437663 79437688 -76192432 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 6 1191 22 0 0 0 chr4 79438099 79438121 -76191999 + AT_rich Low_complexity Low_complexity 1 22 0 6 1191 279 0 0 0 chr4 79438976 79439007 -76191113 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1191 231 36 0 0 chr4 79439935 79439963 -76190157 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1191 1046 78 7 0 chr4 79440161 79440302 -76189818 - B1_Mus1 SINE Alu -6 142 1 6 1191 279 0 0 0 chr4 79441192 79441223 -76188897 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1191 346 406 18 32 chr4 79441860 79442079 -76188041 + B4A SINE B4 42 257 -35 6 1191 297 135 0 0 chr4 79442201 79442253 -76187867 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1191 207 0 0 0 chr4 79442269 79442292 -76187828 + (TAA)n Simple_repeat Simple_repeat 2 24 0 6 1191 615 313 126 45 chr4 79442783 79443274 -76186846 - Lx8 LINE L1 -89 7384 6854 6 1191 384 377 109 4 chr4 79443279 79443553 -76186567 - Lx8 LINE L1 -894 6579 6277 6 1191 7447 132 56 7 chr4 79444330 79445547 -76184573 - Lx3A LINE L1 -9 6972 5696 6 1191 3158 116 6 4 chr4 79445546 79446047 -76184073 + L1_Mur1 LINE L1 3611 4112 -1774 6 1191 962 257 5 0 chr4 79446585 79446787 -76183333 + B3 SINE B2 5 207 -9 6 1191 23 0 0 0 chr4 79447333 79447356 -76182764 + AT_rich Low_complexity Low_complexity 1 23 0 6 1191 27 0 0 0 chr4 79448525 79448552 -76181568 + AT_rich Low_complexity Low_complexity 1 27 0 6 1191 464 48 0 16 chr4 79448795 79448859 -76181261 + (TCCC)n Simple_repeat Simple_repeat 2 64 0 6 1191 932 117 7 0 chr4 79448859 79449013 -76181107 + (TTTC)n Simple_repeat Simple_repeat 3 157 0 6 1191 267 164 45 0 chr4 79449035 79449102 -76181018 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 6 1191 1204 228 228 0 chr4 79449383 79449721 -76180399 + MTD LTR MaLR 5 419 0 6 1191 3030 242 100 65 chr4 79449721 79449779 -76180341 + MTD-int LTR MaLR 1 51 -1207 6 1191 224 0 0 61 chr4 79449779 79449812 -76180308 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1191 3030 242 100 65 chr4 79449812 79450967 -76179153 + MTD-int LTR MaLR 52 1256 -2 6 1191 1113 236 174 14 chr4 79450973 79451329 -76178791 + MTD LTR MaLR 5 417 -4 6 1191 2260 220 78 110 chr4 79452699 79453686 -76176434 + RMER17B LTR ERVK 1 955 -3 6 1191 276 291 27 0 chr4 79453733 79453826 -76176294 - ID2 SINE ID -42 110 12 6 1191 32 26 0 0 chr4 79454035 79454074 -76176046 + AT_rich Low_complexity Low_complexity 1 39 0 6 1191 182 33 67 0 chr4 79454094 79454124 -76175996 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 6 1191 1103 71 0 0 chr4 79454127 79454267 -76175853 - B1_Mm SINE Alu -6 141 2 6 1191 521 293 0 28 chr4 79454276 79454420 -76175700 - B1_Mur3 SINE Alu -6 143 4 6 1191 28 29 0 0 chr4 79454795 79454830 -76175290 + AT_rich Low_complexity Low_complexity 1 35 0 6 1191 537 44 0 0 chr4 79455374 79455442 -76174678 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1191 1326 31 0 0 chr4 79455444 79455603 -76174517 + (GGGAGA)n Simple_repeat Simple_repeat 4 162 0 6 1191 1799 121 3 72 chr4 79455614 79455945 -76174175 + L1Md_F2 LINE L1 6275 6582 0 6 1191 369 0 0 0 chr4 79455975 79456016 -76174104 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1191 5153 153 6 9 chr4 79456116 79456982 -76173138 - Lx2 LINE L1 0 6997 6135 6 1191 458 297 121 0 chr4 79458229 79458394 -76171726 - Lx9 LINE L1 -920 6724 6540 6 1191 51 65 0 0 chr4 79458503 79458596 -76171524 + AT_rich Low_complexity Low_complexity 1 93 0 6 1191 22 56 0 0 chr4 79458723 79458759 -76171361 + AT_rich Low_complexity Low_complexity 1 36 0 6 1191 270 0 0 0 chr4 79459225 79459255 -76170865 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1191 1238 321 54 14 chr4 79459456 79459955 -76170165 + Lx7 LINE L1 6789 7307 -389 6 1191 211 217 0 55 chr4 79459977 79460050 -76170070 + T-rich Low_complexity Low_complexity 3 71 0 6 1191 263 305 0 24 chr4 79460052 79460136 -76169984 + GA-rich Low_complexity Low_complexity 4 85 0 6 1191 319 383 27 70 chr4 79460534 79460832 -76169288 + MTD LTR MaLR 88 372 -47 6 1191 885 218 202 89 chr4 79461727 79462074 -76168046 + ORR1B1 LTR MaLR 1 386 -8 6 1191 1052 92 0 14 chr4 79462349 79462493 -76167627 - B1_Mus2 SINE Alu -1 146 5 6 1191 21 0 0 0 chr4 79462708 79462729 -76167391 + AT_rich Low_complexity Low_complexity 1 21 0 6 1191 477 0 0 0 chr4 79462917 79462970 -76167150 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1191 1030 117 0 0 chr4 79462970 79463115 -76167005 - B1_Mus1 SINE Alu -3 145 1 6 1191 22 35 0 0 chr4 79463210 79463239 -76166881 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 354 368 17 39 chr4 79463241 79463419 -76166701 + Lx8 LINE L1 7150 7323 -150 6 1191 279 100 47 0 chr4 79463561 79463618 -76166502 - Lx5 LINE L1 -1241 5767 5702 6 1191 352 87 0 0 chr4 79463611 79463657 -76166463 - Lx5 LINE L1 -313 5570 5525 6 1191 300 93 0 0 chr4 79463654 79463697 -76166423 + L1_Rod LINE L1 1770 1812 -4035 6 1191 762 22 0 0 chr4 79463762 79463854 -76166266 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1191 367 304 35 35 chr4 79463879 79464111 -76166009 - Lx9 LINE L1 -1588 6056 5825 6 1191 2093 242 22 45 chr4 79464109 79464247 -76165873 - Lx9 LINE L1 -454 5393 5256 6 1191 3619 136 3 2 chr4 79464247 79464816 -76165304 - L1_Mus3 LINE L1 -1 6637 6068 6 1191 2093 242 22 45 chr4 79464816 79465321 -76164799 - Lx9 LINE L1 -592 5255 4765 6 1191 246 324 18 62 chr4 79465371 79465483 -76164637 - ORR1E LTR MaLR -6 353 247 6 1191 1886 136 12 149 chr4 79467332 79467755 -76162365 + RLTR8 LTR ERVK 1 365 0 6 1191 460 328 154 26 chr4 79467783 79468233 -76161887 + Lx8 LINE L1 6614 7121 -352 6 1191 283 192 19 0 chr4 79468355 79468407 -76161713 + 4.5SRNA scRNA scRNA 8 60 -34 6 1191 912 120 0 0 chr4 79469002 79469152 -76160968 + (TG)n Simple_repeat Simple_repeat 1 150 0 6 1191 12072 25 0 0 chr4 79469433 79471534 -76158586 - L1Md_T LINE L1 0 6582 4482 6 1191 186 43 0 0 chr4 79471578 79471601 -76158519 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1191 310 360 118 11 chr4 79471821 79472091 -76158029 - L1MCc LINE L1 -5982 441 143 6 1191 843 39 0 0 chr4 79472262 79472365 -76157755 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 1191 4258 161 11 14 chr4 79472365 79473151 -76156969 - Lx LINE L1 -8 6646 5862 6 1191 33 25 0 0 chr4 79473661 79473701 -76156419 + AT_rich Low_complexity Low_complexity 1 40 0 6 1191 301 414 6 0 chr4 79474573 79474735 -76155385 + B3 SINE B2 2 164 -52 6 1191 461 47 16 0 chr4 79474745 79474809 -76155311 + (CATA)n Simple_repeat Simple_repeat 4 68 0 6 1191 24 0 0 0 chr4 79474822 79474846 -76155274 + AT_rich Low_complexity Low_complexity 1 24 0 6 1191 195 114 0 0 chr4 79475403 79475438 -76154682 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1191 25 51 0 0 chr4 79475622 79475661 -76154459 + AT_rich Low_complexity Low_complexity 1 39 0 6 1191 997 322 36 42 chr4 79475754 79476088 -76154032 - ORR1D2 LTR MaLR -38 332 1 6 1191 239 301 12 0 chr4 79476297 79476380 -76153740 - L1MA4 LINE L1 -370 5930 5847 6 1191 433 301 91 11 chr4 79476417 79476682 -76153438 - L1MA4 LINE L1 -529 5771 5486 6 1191 22 35 0 0 chr4 79477891 79477920 -76152200 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 569 322 25 21 chr4 79477967 79478205 -76151915 + MERVL_2A-int LTR ERVL 110 348 -5413 6 1191 997 353 72 16 chr4 79478220 79478969 -76151151 + MERVL_2A-int LTR ERVL 426 1216 -4545 6 1191 603 365 102 9 chr4 79478959 79479525 -76150595 + MERVL_2A-int LTR ERVL 1167 1785 -3929 6 1191 418 339 24 0 chr4 79479798 79479966 -76150154 - MERVL_2A-int LTR ERVL -2335 3150 2979 6 1191 14334 213 83 100 chr4 79480386 79481067 -76149053 + Lx5 LINE L1 906 1580 -4297 6 1191 4031 103 25 29 chr4 79481067 79481695 -76148425 + L1_Mus1 LINE L1 5941 6566 -1 6 1191 14334 196 27 177 chr4 79481695 79482193 -76147927 + Lx5 LINE L1 1581 2043 -3834 6 1191 495 48 0 0 chr4 79482193 79482255 -76147865 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1191 14334 196 27 177 chr4 79482255 79485762 -76144358 + Lx5 LINE L1 2044 4853 -1024 6 1191 257 0 30 0 chr4 79485762 79485795 -76144325 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1191 14334 196 27 177 chr4 79485795 79486914 -76143206 + Lx5 LINE L1 4854 5876 -1 6 1191 180 0 0 0 chr4 79486946 79486966 -76143154 + (CAA)n Simple_repeat Simple_repeat 1 20 0 6 1191 1473 176 27 0 chr4 79486966 79487223 -76142897 + Lx4A LINE L1 6572 6835 -223 6 1191 1182 249 152 3 chr4 79487217 79487547 -76142573 + Lx5 LINE L1 5982 6360 -690 6 1191 2919 205 74 30 chr4 79487547 79487740 -76142380 - RMER12B LTR ERVK 0 1404 1200 7 1191 426 20 0 0 chr4 79487740 79487791 -76142329 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1191 2919 205 74 30 chr4 79487791 79488355 -76141765 - RMER12B LTR ERVK -205 1199 614 7 1191 1982 239 37 0 chr4 79488381 79488846 -76141274 - RMER12B LTR ERVK -920 484 3 7 1191 2208 298 52 18 chr4 79488846 79489113 -76141007 + Lx5 LINE L1 6364 6631 -419 6 1191 534 75 0 0 chr4 79489113 79489193 -76140927 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 1191 2208 298 52 18 chr4 79489193 79489585 -76140535 + Lx5 LINE L1 6632 7044 -6 6 1191 22 0 0 0 chr4 79489585 79489607 -76140513 + AT_rich Low_complexity Low_complexity 1 22 0 7 1191 523 339 76 40 chr4 79489621 79489786 -76140334 - MERVL_2A-int LTR ERVL -2696 3065 2892 6 1191 494 16 0 16 chr4 79489786 79489850 -76140270 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 7 1191 1098 83 0 0 chr4 79489850 79489994 -76140126 - B1_Mm SINE Alu -3 144 1 7 1191 523 339 76 40 chr4 79489994 79490131 -76139989 - MERVL_2A-int LTR ERVL -2870 2891 2752 6 1191 305 284 0 11 chr4 79490221 79490310 -76139810 - LSU-rRNA_Hsa rRNA rRNA -3246 1789 1702 7 1191 865 244 28 40 chr4 79490327 79490575 -76139545 + MERVL_2A-int LTR ERVL 2516 2760 -3001 7 1191 629 330 37 0 chr4 79490819 79491037 -76139083 + ERVL-B4-int LTR ERVL 4525 4750 -964 7 1191 1022 233 132 26 chr4 79491488 79491962 -76138158 + RMER19C LTR ERVK 308 664 -238 7 1191 1112 56 0 7 chr4 79492263 79492407 -76137713 + B1_Mus1 SINE Alu 1 143 -5 7 1191 510 294 41 27 chr4 79492572 79492792 -76137328 + ERVL-B4-int LTR ERVL 4816 5038 -719 7 1191 352 297 49 28 chr4 79492793 79492935 -76137185 - RLTR23 LTR ERV1 0 430 286 7 1191 484 336 55 13 chr4 79493466 79493701 -76136419 + ERVL-B4-int LTR ERVL 5101 5345 -416 7 1191 1021 111 0 0 chr4 79493721 79493856 -76136264 + B1_Mm SINE Alu 1 135 -12 7 1191 269 26 26 0 chr4 79493857 79493895 -76136225 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1191 207 0 0 0 chr4 79493900 79493923 -76136197 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 1191 280 330 112 22 chr4 79493942 79494174 -76135946 + L1_Rod LINE L1 497 749 -6859 7 1191 932 275 195 39 chr4 79494243 79494440 -76135680 + L1_Rod LINE L1 737 924 -6684 7 1191 362 21 0 21 chr4 79494440 79494488 -76135632 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1191 932 290 147 29 chr4 79494488 79495027 -76135093 + L1_Rod LINE L1 925 1566 -4281 7 1191 946 127 18 0 chr4 79495027 79495193 -76134927 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 7 1191 491 101 13 0 chr4 79495202 79495281 -76134839 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 1191 1762 280 42 135 chr4 79495333 79495836 -76134284 + L1_Rod LINE L1 1581 2009 -3838 7 1191 2388 71 10 0 chr4 79495836 79496144 -76133976 - RLTR10E LTR ERVK 0 311 1 7 1191 1762 280 42 135 chr4 79496144 79496835 -76133285 + L1_Rod LINE L1 2010 2627 -3220 7 1191 1374 75 21 0 chr4 79496835 79497021 -76133099 - B2_Mm1a SINE B2 -2 191 2 7 1191 1762 280 42 135 chr4 79497021 79497755 -76132365 + L1_Rod LINE L1 2628 3330 -2517 7 1191 236 0 91 0 chr4 79497860 79497904 -76132216 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1191 766 270 38 4 chr4 79497953 79498102 -76132018 - L1_Mur3 LINE L1 -2169 3977 3804 7 1191 405 0 0 0 chr4 79498102 79498147 -76131973 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1191 861 277 59 37 chr4 79498147 79498610 -76131510 - L1_Mur3 LINE L1 -2044 3803 3287 7 1191 534 324 127 27 chr4 79498718 79499018 -76131102 + MTE2b LTR MaLR 43 369 -10 7 1191 639 361 74 43 chr4 79499027 79499414 -76130706 + MTE-int LTR MaLR 1 399 -1181 7 1191 312 273 30 10 chr4 79499414 79499514 -76130606 + MTC LTR MaLR 1 102 -319 7 1191 492 86 0 0 chr4 79499539 79499609 -76130511 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1191 240 35 0 0 chr4 79499610 79499639 -76130481 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1191 844 189 36 6 chr4 79499663 79499828 -76130292 + MTC LTR MaLR 252 421 0 7 1191 1316 259 48 19 chr4 79500366 79500726 -76129394 - ORR1D1 LTR MaLR 0 374 13 1 1191 3012 45 3 0 chr4 79500726 79501103 -76129017 - L1Md_T LINE L1 -2 6580 6203 2 1191 633 315 46 107 chr4 79501103 79501133 -76128987 - ORR1D1 LTR MaLR -336 31 1 1 1191 568 231 240 0 chr4 79501133 79501354 -76128766 - ORR1D1-int LTR MaLR 0 1370 1097 1 1191 573 225 38 35 chr4 79501354 79501517 -76128603 + RMER20B LTR ERVK 1 161 -355 3 1191 3725 275 50 43 chr4 79501829 79502035 -76128085 - ORR1D1-int LTR MaLR -256 1114 942 1 1191 1470 190 182 61 chr4 79502035 79502507 -76127613 - RLTR24 LTR ERV1 0 529 1 4 1191 3725 275 50 43 chr4 79502507 79503402 -76126718 - ORR1D1-int LTR MaLR -429 941 5 1 1191 318 233 47 0 chr4 79503421 79503507 -76126613 - ORR1D1 LTR MaLR -284 90 1 1 1191 1743 354 114 39 chr4 79503864 79504957 -76125163 + MTE-int LTR MaLR 406 1580 0 5 1191 1200 210 71 10 chr4 79505104 79505398 -76124722 - Lx3C LINE L1 -5 6971 6660 6 1191 2048 180 115 13 chr4 79505393 79505844 -76124276 - Lx3C LINE L1 -798 6178 5682 6 1191 396 341 31 72 chr4 79506247 79506440 -76123680 + MTEb LTR MaLR 162 346 -33 7 1191 430 26 25 38 chr4 79506772 79506851 -76123269 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 8 1191 1999 152 22 11 chr4 79506926 79507285 -76122835 - Lx3A LINE L1 -9 6972 6610 9 1191 511 346 66 46 chr4 79507372 79507720 -76122400 + ORR1E LTR MaLR 1 355 -4 1 1191 278 244 58 47 chr4 79508559 79508645 -76121475 - MER58C DNA MER1_type 0 215 129 1 1191 23 33 0 0 chr4 79508755 79508785 -76121335 + AT_rich Low_complexity Low_complexity 1 30 0 1 1191 647 281 123 28 chr4 79509055 79509418 -76120702 - Lx9 LINE L1 -395 7249 6712 1 1191 22 0 0 0 chr4 79510089 79510111 -76120009 + AT_rich Low_complexity Low_complexity 1 22 0 1 1191 213 339 58 43 chr4 79510115 79510153 -76119967 - B3A SINE B2 -2 196 7 1 1191 389 326 74 13 chr4 79510153 79510302 -76119818 - RSINE1 SINE B4 0 165 8 1 1191 23 0 0 0 chr4 79510476 79510499 -76119621 + AT_rich Low_complexity Low_complexity 1 23 0 1 1191 4425 247 89 15 chr4 79510499 79511397 -76118723 - Lx3C LINE L1 -2 6974 6044 1 1191 561 68 0 0 chr4 79511397 79511471 -76118649 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1 1191 4425 247 89 15 chr4 79511471 79511805 -76118315 - Lx3C LINE L1 -933 6043 5653 1 1191 349 21 0 0 chr4 79513365 79513413 -76116707 + L1_Mus1 LINE L1 6520 6567 0 2 1191 33 0 0 0 chr4 79513415 79513448 -76116672 + AT_rich Low_complexity Low_complexity 1 33 0 2 1191 1190 68 0 0 chr4 79513519 79513666 -76116454 + B1_Mus1 SINE Alu 2 148 0 2 1191 221 75 0 24 chr4 79513668 79513709 -76116411 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1191 242 355 83 32 chr4 79516115 79516272 -76113848 + MLT1D LTR MaLR 216 380 -125 2 1191 507 69 0 0 chr4 79516742 79516814 -76113306 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1191 347 314 120 14 chr4 79516880 79517022 -76113098 - B4A SINE B4 -35 257 101 2 1191 270 0 0 0 chr4 79517489 79517519 -76112601 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1191 229 118 0 38 chr4 79517556 79517609 -76112511 + (TTATA)n Simple_repeat Simple_repeat 5 55 0 2 1191 56 16 0 0 chr4 79517919 79517982 -76112138 + AT_rich Low_complexity Low_complexity 1 63 0 2 1191 24 53 0 0 chr4 79517997 79518035 -76112085 + AT_rich Low_complexity Low_complexity 1 38 0 3 1191 7398 176 53 15 chr4 79518420 79519824 -76110296 - Lx4A LINE L1 -1 7057 5601 3 1191 339 263 10 0 chr4 79521379 79521478 -76108642 + CT-rich Low_complexity Low_complexity 2 101 0 3 1191 664 353 42 63 chr4 79521508 79521795 -76108325 - B4A SINE B4 -2 290 10 3 1191 23 0 0 0 chr4 79522142 79522165 -76107955 + AT_rich Low_complexity Low_complexity 1 23 0 3 1191 1123 69 0 0 chr4 79522278 79522423 -76107697 + B1_Mm SINE Alu 3 147 0 3 1191 287 104 21 0 chr4 79522423 79522471 -76107649 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 3 1191 482 171 124 0 chr4 79522698 79522803 -76107317 - RLTR24 LTR ERV1 -2 527 410 3 1191 333 270 102 43 chr4 79522829 79523015 -76107105 - Lx6 LINE L1 -4 7456 7260 3 1191 1547 197 27 53 chr4 79523015 79523065 -76107055 - RLTR24 LTR ERV1 -163 366 315 3 1191 305 24 24 0 chr4 79523065 79523107 -76107013 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1191 1547 197 27 53 chr4 79523107 79523432 -76106688 - RLTR24 LTR ERV1 -215 314 2 3 1191 24 0 0 0 chr4 79525380 79525404 -76104716 + AT_rich Low_complexity Low_complexity 1 24 0 4 1191 254 336 8 81 chr4 79525865 79525988 -76104132 - RLTR8 LTR ERVK 0 365 252 4 1191 9604 94 32 9 chr4 79526831 79528245 -76101875 - RMER16-int LTR ERVK -856 4550 3104 4 1191 5672 174 62 40 chr4 79528250 79528859 -76101261 - RMER16-int LTR ERVK -2545 2861 2256 4 1191 3688 64 89 23 chr4 79528859 79529386 -76100734 - LTRIS2 LTR ERV1 0 564 3 4 1191 5672 214 49 55 chr4 79529386 79530704 -76099416 - RMER16-int LTR ERVK -3660 3584 1431 4 1191 1743 197 38 83 chr4 79530866 79531265 -76098855 - RLTR41 LTR ERV1 -4 442 62 4 1191 763 222 0 66 chr4 79531287 79531485 -76098635 - RMER16-int LTR ERVK -3894 1512 1328 4 1191 2774 120 78 24 chr4 79531539 79532410 -76097710 - RMER16-int LTR ERVK -3975 1431 514 4 1191 4477 106 32 64 chr4 79532670 79533446 -76096674 + RMER17A LTR ERVK 1 751 0 4 1191 261 0 0 0 chr4 79533465 79533494 -76096626 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1191 256 321 82 9 chr4 79534553 79534663 -76095457 + Lx8 LINE L1 7250 7367 -106 4 1191 407 368 29 10 chr4 79534656 79534862 -76095258 - Lx9 LINE L1 -319 7325 7116 4 1191 390 21 0 0 chr4 79534875 79534922 -76095198 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1191 26 0 0 0 chr4 79536104 79536130 -76093990 + AT_rich Low_complexity Low_complexity 1 26 0 5 1191 22 103 0 0 chr4 79537282 79537360 -76092760 + AT_rich Low_complexity Low_complexity 1 78 0 5 1191 1045 354 22 17 chr4 79537429 79537972 -76092148 + Lx8 LINE L1 6773 7318 -155 5 1191 1522 252 86 4 chr4 79538128 79538582 -76091538 + Lx9 LINE L1 7010 7500 -144 5 1191 27 73 0 0 chr4 79538642 79538697 -76091423 + AT_rich Low_complexity Low_complexity 1 55 0 5 1191 1197 71 0 0 chr4 79538958 79539127 -76090993 + (CA)n Simple_repeat Simple_repeat 1 169 0 5 1191 9783 46 18 21 chr4 79539594 79540885 -76089235 - L1Md_A LINE L1 -525 5358 4072 5 1191 11629 95 7 10 chr4 79540880 79543163 -76086957 - L1Md_A LINE L1 -3022 2861 631 5 1191 315 0 0 0 chr4 79543210 79543245 -76086875 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1191 646 281 30 20 chr4 79543614 79543814 -76086306 + B3 SINE B2 2 203 -13 5 1191 1744 161 13 26 chr4 79543818 79544131 -76085989 + RLTR27 LTR ERVK 1 309 0 5 1191 25 31 0 0 chr4 79544442 79544474 -76085646 + AT_rich Low_complexity Low_complexity 1 32 0 6 1191 31 58 0 0 chr4 79545087 79545139 -76084981 + AT_rich Low_complexity Low_complexity 1 52 0 6 1191 513 68 0 0 chr4 79545513 79545587 -76084533 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1191 215 330 84 42 chr4 79545633 79545728 -76084392 - RSINE1 SINE B4 -63 102 4 6 1191 369 0 0 0 chr4 79546962 79547003 -76083117 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1191 1034 101 0 27 chr4 79547197 79547381 -76082739 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1191 702 91 0 0 chr4 79547383 79547482 -76082638 + (GA)n Simple_repeat Simple_repeat 2 100 0 6 1191 201 139 0 0 chr4 79548152 79548195 -76081925 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1191 333 0 0 0 chr4 79548908 79548945 -76081175 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1191 873 112 7 15 chr4 79549229 79549365 -76080755 + B1_Mus1 SINE Alu 1 135 -13 6 1191 576 0 0 0 chr4 79549366 79549430 -76080690 + (CAAAA)n Simple_repeat Simple_repeat 5 68 0 7 1191 351 0 0 0 chr4 79550259 79550298 -76079822 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1191 518 327 20 10 chr4 79550675 79550876 -76079244 + B3 SINE B2 4 206 -10 7 1191 225 94 0 0 chr4 79551548 79551580 -76078540 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1191 1122 35 0 0 chr4 79551580 79551722 -76078398 + (GA)n Simple_repeat Simple_repeat 2 144 0 7 1191 294 336 25 16 chr4 79552894 79553207 -76076913 + L1M2 LINE L1 2439 2756 -3387 7 1191 321 352 16 0 chr4 79553284 79553409 -76076711 + L1M2 LINE L1 2787 2913 -3230 7 1191 597 52 0 0 chr4 79553452 79553529 -76076591 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 7 1191 594 0 0 0 chr4 79553531 79553597 -76076523 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1191 299 288 82 58 chr4 79553630 79553958 -76076162 + L1_Rod LINE L1 2950 3285 -2562 7 1191 2714 281 56 41 chr4 79553983 79554925 -76075195 + MTD-int LTR MaLR 155 1110 -148 7 1191 677 251 18 54 chr4 79554980 79555203 -76074917 + MTD-int LTR MaLR 1044 1258 0 7 1191 1207 240 98 70 chr4 79555203 79555257 -76074863 + MTD LTR MaLR 1 51 -368 7 1191 2807 34 0 3 chr4 79555257 79555585 -76074535 - IAPLTR2b LTR ERVK 0 327 1 8 1191 1207 240 98 70 chr4 79555585 79555929 -76074191 + MTD LTR MaLR 52 410 -9 7 1191 226 327 68 34 chr4 79556046 79556163 -76073957 - MLT1B LTR MaLR -19 371 251 8 1191 198 0 0 0 chr4 79557101 79557123 -76072997 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1191 4379 113 23 65 chr4 79557512 79558296 -76071824 - Lx LINE L1 -1 6653 5903 8 1191 683 230 0 20 chr4 79558667 79558818 -76071302 + B1_Mur4 SINE Alu 1 148 -2 8 1191 300 366 114 33 chr4 79559346 79559713 -76070407 + L1MEc LINE L1 227 623 -5777 8 1191 1098 104 0 0 chr4 79560013 79560157 -76069963 - B1_Mus1 SINE Alu -4 144 1 8 1191 424 0 36 0 chr4 79560253 79560309 -76069811 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1191 451 188 0 151 chr4 79560466 79560585 -76069535 - B1_Mur2 SINE Alu 0 149 49 8 1192 318 227 107 23 chr4 79560971 79561071 -76069049 - HAL1-3A_ME LINE L1 -737 2121 2011 8 1192 666 84 0 0 chr4 79561071 79561178 -76068942 + (TCTCTG)n Simple_repeat Simple_repeat 6 112 0 9 1192 318 227 107 23 chr4 79561178 79561208 -76068912 - HAL1-3A_ME LINE L1 -848 2010 1981 8 1192 977 305 59 59 chr4 79561236 79561742 -76068378 + Lx9 LINE L1 6581 7086 -558 9 1192 5236 59 1 26 chr4 79563092 79563787 -76066333 - L1Md_F2 LINE L1 -12 6570 5893 9 1192 328 353 53 7 chr4 79564249 79564400 -76065720 - RMER15 LTR ERVL -9 566 409 9 1192 338 354 36 15 chr4 79564598 79564793 -76065327 - Lx8 LINE L1 -386 7087 6889 9 1192 22 35 0 0 chr4 79564834 79564863 -76065257 + AT_rich Low_complexity Low_complexity 1 29 0 9 1192 334 291 157 13 chr4 79564894 79565047 -76065073 - Lx8 LINE L1 -743 6730 6556 9 1192 183 267 0 104 chr4 79565087 79565154 -76064966 + L3 LINE CR1 2173 2232 -2257 9 1192 926 323 84 19 chr4 79565406 79565943 -76064177 - RMER15-int LTR ERVL -3952 1047 476 9 1192 276 342 88 0 chr4 79566294 79566408 -76063712 - RMER15 LTR ERVL -11 564 441 9 1192 553 307 83 56 chr4 79567617 79567940 -76062180 - MLT1A0 LTR MaLR -22 386 1 9 1192 426 327 84 33 chr4 79568425 79568640 -76061480 + MTEa LTR MaLR 1 226 -153 9 1192 304 389 70 5 chr4 79568644 79568843 -76061277 + MT2A LTR ERVL 245 456 -77 9 1192 241 292 25 74 chr4 79569008 79569041 -76061079 - B2_Mm2 SINE B2 -75 120 5 1 1192 286 337 22 0 chr4 79569041 79569130 -76060990 - RSINE1 SINE B4 -69 96 6 1 1192 2772 129 7 2 chr4 79569198 79569632 -76060488 - L1_Mus2 LINE L1 -303 5580 5145 1 1192 5987 109 53 29 chr4 79569646 79570602 -76059518 + L1_Mus2 LINE L1 5587 6565 -1 1 1192 534 16 0 0 chr4 79570943 79571006 -76059114 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 1 1192 613 262 21 56 chr4 79571015 79571249 -76058871 - Lx4B LINE L1 -31 7027 6802 1 1192 1684 182 36 18 chr4 79571245 79571575 -76058545 + Lx4B LINE L1 6490 6825 -233 1 1192 1746 208 47 2 chr4 79573780 79574205 -76055915 - Lx4B LINE L1 -2267 3610 3167 1 1192 9895 182 64 16 chr4 79574202 79574986 -76055134 + Lx4B LINE L1 3601 4388 -1489 1 1192 2793 54 0 0 chr4 79574986 79575318 -76054802 - IAPEY3_LTR LTR ERVK 0 332 1 1 1192 9895 182 64 16 chr4 79575318 79575685 -76054435 + Lx4B LINE L1 4389 4807 -1070 1 1192 203 0 37 0 chr4 79575685 79575712 -76054408 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1192 402 21 0 0 chr4 79575712 79575758 -76054362 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1192 9895 192 59 18 chr4 79575758 79577034 -76053086 + Lx4B LINE L1 4808 6146 -912 1 1192 1688 67 58 0 chr4 79577034 79577257 -76052863 + L1_Mus1 LINE L1 6331 6566 -1 1 1192 4499 233 153 21 chr4 79577257 79578070 -76052050 + Lx4B LINE L1 6147 7058 0 1 1192 21 36 0 0 chr4 79578200 79578228 -76051892 + AT_rich Low_complexity Low_complexity 1 28 0 1 1192 33 25 0 0 chr4 79578260 79578300 -76051820 + AT_rich Low_complexity Low_complexity 1 40 0 1 1192 640 298 159 41 chr4 79579609 79579925 -76050195 - MTC LTR MaLR -35 365 12 1 1192 379 0 0 0 chr4 79579946 79579990 -76050130 - MT2_Mm LTR ERVL 0 493 450 1 1192 3046 46 0 3 chr4 79579993 79580384 -76049736 + MTA_Mm-int LTR MaLR 1 390 -708 1 1192 35624 37 5 8 chr4 79580384 79585554 -76044566 + L1Md_T LINE L1 440 5586 -297 1 1192 8038 50 1 0 chr4 79585554 79586549 -76043571 + L1Md_T LINE L1 5587 6582 0 1 1192 1372 79 0 0 chr4 79586555 79586744 -76043376 + L1Md_F2 LINE L1 6382 6570 -12 1 1192 5600 49 3 1 chr4 79586771 79587492 -76042628 + MTA_Mm-int LTR MaLR 377 1098 0 1 1192 3228 26 31 0 chr4 79587492 79587876 -76042244 + MTA_Mm LTR MaLR 1 396 0 1 1192 383 287 114 58 chr4 79588430 79588807 -76041313 - L1M5 LINE L1 -2991 3155 2758 1 1192 429 340 0 68 chr4 79589604 79589765 -76040355 + B3A SINE B2 47 196 -2 1 1192 513 0 0 0 chr4 79590008 79590065 -76040055 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1192 314 159 14 0 chr4 79590065 79590134 -76039986 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1192 248 344 10 40 chr4 79590182 79590282 -76039838 - B4A SINE B4 -20 272 176 1 1192 285 329 26 0 chr4 79591486 79591562 -76038558 - B4 SINE B4 -20 272 195 1 1192 4413 197 22 5 chr4 79591624 79592549 -76037571 - L1_Mur2 LINE L1 -234 5643 4704 1 1192 2957 221 14 101 chr4 79592550 79593325 -76036795 + Lx4B LINE L1 6327 7034 -24 1 1192 228 111 0 0 chr4 79593327 79593363 -76036757 + (TTAG)n Simple_repeat Simple_repeat 2 37 0 1 1192 847 128 7 34 chr4 79595336 79595482 -76034638 - B1_Mus1 SINE Alu -1 147 6 1 1192 353 198 0 172 chr4 79595369 79595503 -76034617 - MT2B LTR ERVL -337 264 154 1 1192 689 266 64 28 chr4 79596876 79597159 -76032961 + L1VL2 LINE L1 132 424 -5911 1 1192 279 188 14 55 chr4 79597145 79597218 -76032902 + L1Md_F LINE L1 674 743 -5776 1 1192 2640 221 65 25 chr4 79597227 79597976 -76032144 + L1Md_F LINE L1 288 1130 -5859 1 1192 220 127 36 0 chr4 79598027 79598082 -76032038 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1192 570 29 0 0 chr4 79598086 79598154 -76031966 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1192 7472 88 16 1 chr4 79598325 79600093 -76030027 - L1_Mus2 LINE L1 0 6566 4772 1 1192 648 111 0 0 chr4 79600094 79600193 -76029927 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 1 1192 2852 105 0 4 chr4 79600193 79600734 -76029386 - L1VL4 LINE L1 -2269 1290 753 1 1192 8037 58 0 0 chr4 79600766 79602197 -76027923 - L1Md_F2 LINE L1 -2 6580 5149 1 1192 228 143 0 0 chr4 79602197 79602232 -76027888 - L1Md_F LINE L1 -6478 41 7 1 1192 2386 230 68 27 chr4 79602229 79602939 -76027181 - L1Md_F LINE L1 -5493 1026 288 1 1192 279 188 14 55 chr4 79602948 79603021 -76027099 - L1Md_F LINE L1 -5776 743 674 1 1192 864 278 60 23 chr4 79603007 79603357 -76026763 - L1VL2 LINE L1 -5911 424 62 1 1192 228 67 0 0 chr4 79604875 79604905 -76025215 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1192 297 322 70 16 chr4 79605168 79605484 -76024636 + L1M4 LINE L1 4951 5283 -863 1 1192 202 250 32 32 chr4 79605645 79605707 -76024413 + GA-rich Low_complexity Low_complexity 2 63 0 1 1192 559 278 78 31 chr4 79605739 79606059 -76024061 + L1MB3 LINE L1 5534 5868 -315 1 1192 22 0 0 0 chr4 79606944 79606966 -76023154 + AT_rich Low_complexity Low_complexity 1 22 0 1 1192 452 32 16 0 chr4 79607021 79607083 -76023037 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 1 1192 1870 146 83 57 chr4 79607332 79607716 -76022404 + ORR1B1 LTR MaLR 1 394 0 1 1192 973 263 179 22 chr4 79608164 79608624 -76021496 - Lx7 LINE L1 -1558 6138 5607 1 1192 1106 306 51 22 chr4 79608638 79608942 -76021178 + MTC LTR MaLR 57 375 -46 1 1192 454 16 16 16 chr4 79608950 79609014 -76021106 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 1 1192 981 122 0 7 chr4 79609014 79609153 -76020967 - B1_Mm SINE Alu -8 139 2 1 1192 1106 306 51 22 chr4 79609153 79609203 -76020917 + MTC LTR MaLR 376 421 0 1 1192 4159 214 72 11 chr4 79609203 79610087 -76020033 - Lx7 LINE L1 -278 5602 4660 1 1192 189 0 0 0 chr4 79610087 79610108 -76020012 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1192 4159 214 72 11 chr4 79610108 79610319 -76019801 - Lx7 LINE L1 -1221 4659 4440 1 1192 357 233 11 11 chr4 79610335 79610422 -76019698 - B1_Mm SINE Alu 0 147 61 1 1192 266 239 230 7 chr4 79610432 79610571 -76019549 - Lx7 LINE L1 -1796 4084 3915 1 1192 279 0 0 0 chr4 79610585 79610616 -76019504 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1192 881 108 16 3 chr4 79610616 79610756 -76019364 - B1_Mus1 SINE Alu -9 139 1 1 1192 260 246 118 0 chr4 79610802 79610912 -76019208 - Lx7 LINE L1 -1976 3904 3782 1 1192 502 198 9 0 chr4 79610915 79611021 -76019099 + RMER6-int LTR ERVK 3071 3177 0 1 1192 980 210 146 112 chr4 79611021 79611524 -76018596 + RMER6C LTR ERVK 1 563 -193 1 1192 2227 56 0 17 chr4 79611524 79611813 -76018307 - L1_Mus1 LINE L1 -2 6565 6282 1 1192 504 253 78 97 chr4 79611813 79611885 -76018235 + RMER6C LTR ERVK 564 643 -113 1 1192 4255 169 20 46 chr4 79611897 79612729 -76017391 + Lx3C LINE L1 6158 6968 -8 1 1192 1034 288 178 30 chr4 79612809 79613101 -76017019 - L1_Mur3 LINE L1 -2180 3706 3379 1 1192 895 149 7 0 chr4 79613101 79613242 -76016878 + B1_Mus1 SINE Alu 2 143 -5 1 1192 2465 211 89 36 chr4 79613242 79614032 -76016088 - L1_Mur3 LINE L1 -2508 3378 2464 1 1192 650 299 42 7 chr4 79614025 79614311 -76015809 - L1_Mur3 LINE L1 -531 5349 5054 1 1192 2235 52 17 0 chr4 79614370 79614660 -76015460 - L1Md_A LINE L1 -1 6581 6287 1 1192 651 67 0 0 chr4 79614723 79614812 -76015308 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1192 360 64 0 0 chr4 79614816 79614863 -76015257 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1192 2433 191 107 29 chr4 79614881 79615222 -76014898 + RMER6D LTR ERVK 1 368 -352 1 1192 414 0 0 0 chr4 79615222 79615268 -76014852 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1192 2433 191 107 29 chr4 79615268 79615504 -76014616 + RMER6D LTR ERVK 369 623 -97 1 1192 584 233 151 8 chr4 79615504 79615755 -76014365 + Lx9 LINE L1 7357 7643 -1 1 1192 22 35 0 0 chr4 79616755 79616784 -76013336 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 547 306 0 24 chr4 79617545 79617672 -76012448 + RSINE1 SINE B4 17 140 -25 1 1192 741 152 20 80 chr4 79618075 79618225 -76011895 - RLTR13D4 LTR ERVK -892 141 1 1 1192 21 36 0 0 chr4 79618602 79618630 -76011490 + AT_rich Low_complexity Low_complexity 1 28 0 1 1192 273 359 43 0 chr4 79618630 79618722 -76011398 - B1F2 SINE Alu -47 102 7 1 1192 560 217 17 0 chr4 79618731 79618851 -76011269 + ORR1C1 LTR MaLR 2 123 -255 1 1192 582 15 0 0 chr4 79618999 79619066 -76011054 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1192 193 135 0 37 chr4 79619534 79619588 -76010532 + A-rich Low_complexity Low_complexity 2 53 0 1 1192 216 375 0 0 chr4 79620218 79620274 -76009846 + ID4_ SINE ID 28 83 0 1 1192 8323 146 24 2 chr4 79620492 79622132 -76007988 + Lx2 LINE L1 5315 6997 0 1 1192 190 164 66 98 chr4 79622364 79622425 -76007695 + L3 LINE CR1 3325 3383 -1106 1 1192 366 42 0 0 chr4 79622656 79622704 -76007416 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 1 1192 269 366 153 21 chr4 79622745 79622935 -76007185 - LTR75 LTR ERVL -191 371 157 1 1192 37 23 0 0 chr4 79623201 79623245 -76006875 + AT_rich Low_complexity Low_complexity 1 44 0 1 1192 1573 217 101 0 chr4 79623403 79623748 -76006372 - ORR1C2 LTR MaLR 0 384 5 1 1192 352 422 33 52 chr4 79624460 79624827 -76005293 + LTR16A LTR ERVL 26 385 -66 1 1192 263 169 0 14 chr4 79625232 79625304 -76004816 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1192 3982 193 100 38 chr4 79625598 79626530 -76003590 - Lx3C LINE L1 -187 6789 5800 1 1192 1016 153 61 9 chr4 79626546 79626776 -76003344 - MusHAL1 LINE L1 -453 2259 2018 1 1192 18230 149 105 10 chr4 79626770 79632414 -75997706 - L1Md_F2 LINE L1 -227 6355 122 1 1192 4125 182 196 93 chr4 79632411 79633121 -75996999 - L1_Mm LINE L1 -1899 3984 3268 1 1192 705 79 0 0 chr4 79633121 79633222 -75996898 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1192 684 70 0 8 chr4 79633225 79633339 -75996781 - B1_Mus1 SINE Alu -2 146 36 1 1192 4125 182 196 93 chr4 79633339 79633882 -75996238 - L1_Mm LINE L1 -2616 3264 2473 1 1192 1902 141 102 3 chr4 79634361 79634695 -75995425 - Lx3B LINE L1 -2 6971 6605 1 1192 3020 134 0 4 chr4 79635570 79636042 -75994078 - L1_Mus4 LINE L1 0 6636 6167 1 1192 264 338 14 0 chr4 79636319 79636393 -75993727 - B1_Mus1 SINE Alu -65 83 9 1 1192 1061 298 134 31 chr4 79636432 79636684 -75993436 + Lx8 LINE L1 6666 6972 -501 1 1192 612 0 0 0 chr4 79636684 79636752 -75993368 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1192 1061 298 134 31 chr4 79636752 79636918 -75993202 + Lx8 LINE L1 6973 7126 -347 1 1192 1027 290 76 29 chr4 79637115 79637495 -75992625 - MTD LTR MaLR -21 398 1 1 1192 344 278 61 39 chr4 79637496 79637676 -75992444 + Lx8 LINE L1 7290 7473 0 1 1192 817 259 97 9 chr4 79637984 79638210 -75991910 + MTD LTR MaLR 160 405 -14 1 1192 592 327 146 51 chr4 79638703 79639144 -75990976 + MT2B LTR ERVL 2 567 -34 1 1192 368 104 0 15 chr4 79639399 79639467 -75990653 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1192 23 54 0 0 chr4 79639472 79639509 -75990611 + AT_rich Low_complexity Low_complexity 1 37 0 2 1192 29942 106 7 12 chr4 79639514 79641882 -75988238 - L1_Mus1 LINE L1 0 6567 4195 2 1192 1656 181 54 88 chr4 79641882 79642289 -75987831 + RLTR9C LTR ERVK 1 393 0 2 1192 29942 133 18 17 chr4 79642289 79646119 -75984001 - L1_Mus1 LINE L1 -1689 4194 381 2 1192 273 154 39 0 chr4 79646204 79646256 -75983864 - Lx9 LINE L1 -179 7465 7412 2 1192 7769 66 2 1 chr4 79646285 79647922 -75982198 - L1Md_F2 LINE L1 -4 6578 4940 2 1192 610 268 24 67 chr4 79647921 79648129 -75981991 + Lx9 LINE L1 7219 7417 -227 2 1192 6221 70 20 5 chr4 79651404 79652238 -75977882 + L1Md_F2 LINE L1 5724 6570 -12 2 1192 396 0 0 0 chr4 79653043 79653087 -75977033 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1192 232 200 0 32 chr4 79653344 79653406 -75976714 + GA-rich Low_complexity Low_complexity 1 60 0 2 1192 1062 181 0 0 chr4 79654391 79654745 -75975375 + (TATG)n Simple_repeat Simple_repeat 1 354 0 2 1192 255 190 0 0 chr4 79655296 79655354 -75974766 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1192 1074 274 85 24 chr4 79656373 79656784 -75973336 - Lx9 LINE L1 -611 7033 6598 2 1192 501 274 15 53 chr4 79657223 79657354 -75972766 + B1_Mur3 SINE Alu 18 143 -6 2 1192 26 88 0 0 chr4 79657358 79657426 -75972694 + AT_rich Low_complexity Low_complexity 1 68 0 2 1192 1146 278 36 39 chr4 79657473 79658010 -75972110 + MYSERV16_I-int LTR ERVK 5 451 -1875 2 1192 280 259 44 66 chr4 79658029 79658211 -75971909 + MYSERV-int LTR ERVK 6371 6548 -2 2 1192 13073 103 11 7 chr4 79658238 79659986 -75970134 - L1_Mur1 LINE L1 -1188 4698 2941 2 1192 7045 50 1 18 chr4 79659986 79660897 -75969223 + L1Md_F2 LINE L1 5686 6581 -1 2 1192 13073 103 11 7 chr4 79660897 79661180 -75968940 - L1_Mur1 LINE L1 -2946 2940 2659 2 1192 4056 115 40 18 chr4 79661163 79662024 -75968096 + Lx3_Mus LINE L1 5244 6125 -884 2 1192 2590 125 37 0 chr4 79662037 79662444 -75967676 + BGLII_Mus LTR ERVK 1 422 0 2 1192 426 218 98 49 chr4 79662827 79663010 -75967110 + MYSERV16_I-int LTR ERVK 652 843 -1999 2 1192 591 157 35 9 chr4 79663101 79663217 -75966903 + RMER3D-int LTR ERVK 486 604 -2238 2 1192 622 225 6 18 chr4 79663333 79663496 -75966624 + RMER3D-int LTR ERVK 1155 1315 -1527 2 1192 2327 68 3 0 chr4 79663497 79663805 -75966315 - L1_Mur1 LINE L1 -1100 4786 4478 2 1192 22 0 0 0 chr4 79663953 79663975 -75966145 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 417 342 31 5 chr4 79664810 79665073 -75965047 - MTE2b LTR MaLR -1 378 57 2 1192 26 30 0 0 chr4 79665258 79665291 -75964829 + AT_rich Low_complexity Low_complexity 1 33 0 2 1192 3068 206 16 10 chr4 79665474 79666090 -75964030 - Lx LINE L1 0 6654 6035 2 1192 2272 162 9 128 chr4 79666098 79666651 -75963469 - MusHAL1 LINE L1 -1015 4862 4376 2 1192 5179 118 68 11 chr4 79666648 79668394 -75961726 - MusHAL1 LINE L1 -3121 2765 651 2 1192 200 111 0 27 chr4 79668428 79668465 -75961655 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 2 1192 227 211 31 21 chr4 79668635 79668732 -75961388 + RMER17C LTR ERVK 179 276 -134 2 1192 2076 151 3 19 chr4 79668779 79669103 -75961017 + ORR1A2 LTR MaLR 1 319 -8 2 1192 268 276 111 30 chr4 79669635 79669734 -75960386 + MTEb LTR MaLR 261 367 -12 2 1192 431 305 68 8 chr4 79669747 79669982 -75960138 - L1M2 LINE L1 -874 5269 5021 2 1192 2362 235 54 24 chr4 79669990 79670543 -75959577 - Lx5 LINE L1 -3 7047 6478 2 1192 2541 191 95 70 chr4 79671435 79671774 -75958346 - RMER6C LTR ERVK 0 690 336 2 1192 468 0 0 0 chr4 79671774 79671826 -75958294 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1192 2541 191 95 70 chr4 79671826 79672157 -75957963 - RMER6C LTR ERVK -355 335 3 2 1192 290 348 51 43 chr4 79672387 79672504 -75957616 + RSINE1 SINE B4 4 121 -44 2 1192 465 178 9 9 chr4 79673405 79673513 -75956607 - Lx3C LINE L1 -5 6971 6864 2 1192 2214 234 20 52 chr4 79673628 79674222 -75955898 - RMER15 LTR ERVL 0 575 1 2 1192 3278 149 47 16 chr4 79675207 79675785 -75954335 - Lx3B LINE L1 -3 6970 6375 2 1192 741 23 0 0 chr4 79675785 79675872 -75954248 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 1192 531 0 0 0 chr4 79676403 79676462 -75953658 + (CTG)n Simple_repeat Simple_repeat 1 59 0 2 1192 1374 127 119 63 chr4 79676514 79676833 -75953287 - Lx3B LINE L1 -602 6371 6035 2 1192 276 273 62 57 chr4 79676897 79677067 -75953053 + Lx8 LINE L1 7274 7446 -27 2 1192 2712 28 3 50 chr4 79677067 79677410 -75952710 - IAPLTR2b LTR ERVK 0 327 1 2 1192 276 273 62 57 chr4 79677410 79677433 -75952687 + Lx8 LINE L1 7447 7468 -5 2 1192 237 206 40 40 chr4 79677676 79677777 -75952343 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1192 428 307 65 20 chr4 79678182 79678335 -75951785 + RSINE1 SINE B4 2 161 -4 2 1192 189 147 0 0 chr4 79678689 79678723 -75951397 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1192 242 333 76 15 chr4 79678723 79678854 -75951266 - RLTR22_Mur LTR ERVK -276 1572 1434 2 1192 4499 169 20 65 chr4 79678842 79678857 -75951263 - RMER12 LTR ERVK -415 907 893 2 1192 261 0 0 0 chr4 79678857 79678886 -75951234 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1192 4499 169 20 65 chr4 79678886 79679817 -75950303 - RMER12 LTR ERVK -430 892 5 2 1192 366 353 37 0 chr4 79679823 79679959 -75950161 + RSINE1 SINE B4 25 165 0 2 1192 23 0 0 0 chr4 79680114 79680137 -75949983 + AT_rich Low_complexity Low_complexity 1 23 0 2 1192 232 278 33 11 chr4 79680159 79680250 -75949870 - MLT1A1 LTR MaLR -19 389 297 2 1192 516 295 0 0 chr4 79680643 79680772 -75949348 + B1_Mur1 SINE Alu 1 129 -20 2 1192 405 0 0 0 chr4 79680792 79680837 -75949283 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1192 3708 129 32 2 chr4 79680860 79681427 -75948693 - MT2B2 LTR ERVL 0 584 1 2 1192 395 237 32 13 chr4 79681891 79682045 -75948075 - Lx9 LINE L1 -1 7643 7487 2 1192 368 211 62 0 chr4 79682054 79682182 -75947938 + (TA)n Simple_repeat Simple_repeat 2 137 0 2 1192 393 172 0 45 chr4 79683521 79683655 -75946465 + (TCTCTG)n Simple_repeat Simple_repeat 5 132 0 2 1192 236 260 48 0 chr4 79683937 79684041 -75946079 - Lx9 LINE L1 -7 7637 7529 2 1192 679 97 9 9 chr4 79684047 79684162 -75945958 + (TA)n Simple_repeat Simple_repeat 2 116 0 2 1192 21 0 0 0 chr4 79684399 79684420 -75945700 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 824 158 61 0 chr4 79684585 79684749 -75945371 - Lx3A LINE L1 -11 6970 6797 2 1192 217 184 39 26 chr4 79684786 79684864 -75945256 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 2 1192 21 0 0 0 chr4 79685794 79685815 -75944305 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 228 86 0 0 chr4 79685823 79685858 -75944262 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1192 254 250 29 107 chr4 79686191 79686203 -75943917 + MT2B LTR ERVL 153 156 -445 2 1192 468 223 0 0 chr4 79686203 79686297 -75943823 + B1_Mus1 SINE Alu 3 96 -52 2 1192 35632 47 17 22 chr4 79687105 79688724 -75941396 - L1Md_F2 LINE L1 -2 6580 4955 2 1192 231 167 46 77 chr4 79688724 79688789 -75941331 + RMER20A LTR ERVK 186 248 -268 2 18 35632 47 17 22 chr4 79688789 79693090 -75937030 - L1Md_F2 LINE L1 -2 4954 631 2 1193 1470 291 68 31 chr4 79693294 79693912 -75936208 - Lx9 LINE L1 -131 7513 6873 2 1193 1109 250 35 119 chr4 79693912 79694526 -75935594 - RLTR31_Mur LTR ERVK 0 553 69 2 1193 501 59 0 0 chr4 79694529 79694597 -75935523 + B1_Mm SINE Alu 80 147 0 2 1193 549 0 0 0 chr4 79695459 79695520 -75934600 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1193 414 0 0 0 chr4 79695686 79695732 -75934388 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1193 246 32 0 0 chr4 79695734 79695765 -75934355 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1193 1452 44 0 0 chr4 79695880 79696060 -75934060 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1193 363 96 0 0 chr4 79696062 79696114 -75934006 + (TTC)n Simple_repeat Simple_repeat 1 52 0 2 1193 1125 69 7 0 chr4 79696114 79696259 -75933861 - B1_Mm SINE Alu -1 146 1 2 1193 25 75 0 0 chr4 79696539 79696592 -75933528 + AT_rich Low_complexity Low_complexity 1 53 0 2 1193 25 65 0 0 chr4 79697531 79697577 -75932543 + AT_rich Low_complexity Low_complexity 1 46 0 2 1193 24 32 0 0 chr4 79698134 79698165 -75931955 + AT_rich Low_complexity Low_complexity 1 31 0 2 1193 22 0 0 0 chr4 79698974 79698996 -75931124 + AT_rich Low_complexity Low_complexity 1 22 0 2 1193 23 54 0 0 chr4 79699813 79699850 -75930270 + AT_rich Low_complexity Low_complexity 1 37 0 2 1193 21 0 0 0 chr4 79700726 79700747 -75929373 + AT_rich Low_complexity Low_complexity 1 21 0 2 1193 26 0 0 0 chr4 79700830 79700856 -75929264 + AT_rich Low_complexity Low_complexity 1 26 0 2 1193 8434 133 33 10 chr4 79700857 79702334 -75927786 - Lx2 LINE L1 -1 6996 5481 2 1193 539 281 27 31 chr4 79702565 79702789 -75927331 - L1MD3 LINE L1 -437 7558 7336 2 1193 734 66 0 49 chr4 79703554 79703686 -75926434 + (GAGAA)n Simple_repeat Simple_repeat 5 129 0 2 1193 1369 17 29 0 chr4 79703686 79703859 -75926261 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1193 734 66 0 49 chr4 79703859 79703870 -75926250 + (GAGAA)n Simple_repeat Simple_repeat 5 15 0 2 1193 595 306 18 57 chr4 79704102 79704331 -75925789 - Lx6 LINE L1 -38 7422 7203 2 1193 527 98 11 0 chr4 79704354 79704446 -75925674 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 2 1193 4073 247 112 15 chr4 79704463 79704983 -75925137 - Lx5 LINE L1 -36 7014 6422 2 1193 393 39 0 0 chr4 79704983 79705034 -75925086 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1193 453 19 0 0 chr4 79705034 79705087 -75925033 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1193 4073 247 112 15 chr4 79705087 79705639 -75924481 - Lx5 LINE L1 -629 6421 5838 2 1193 1170 174 59 3 chr4 79705815 79706292 -75923828 + L1_Mur2 LINE L1 899 1470 -4413 2 1193 464 336 22 7 chr4 79706355 79706493 -75923627 + B4 SINE B4 74 213 -79 2 1193 3570 177 19 3 chr4 79706493 79707121 -75922999 + Lx4A LINE L1 6421 7058 0 2 1193 6933 118 19 1 chr4 79707148 79708561 -75921559 + L1_Mus4 LINE L1 5234 6636 0 2 1193 987 124 0 17 chr4 79708561 79708741 -75921379 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 2 1193 342 0 0 0 chr4 79708797 79708835 -75921285 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1193 631 333 40 18 chr4 79710137 79710363 -75919757 + B4A SINE B4 48 278 -14 3 1193 3860 40 15 2 chr4 79710455 79710932 -75919188 - L1Md_F3 LINE L1 0 6584 6102 3 1193 1965 13 4 0 chr4 79710932 79711162 -75918958 + L1Md_F3 LINE L1 5833 6063 -521 3 1193 20203 192 32 17 chr4 79712073 79713848 -75916272 + Lx2B LINE L1 1326 3155 -2731 3 1193 336 64 0 0 chr4 79713848 79713895 -75916225 + (CAAT)n Simple_repeat Simple_repeat 1 47 0 3 1193 20203 192 32 17 chr4 79713895 79714471 -75915649 + Lx2B LINE L1 3156 3747 -2139 3 1193 2077 145 6 0 chr4 79714471 79714796 -75915324 - ORR1A2 LTR MaLR 0 327 1 3 1193 20203 192 32 17 chr4 79714796 79715569 -75914551 + Lx2B LINE L1 3748 4522 -1364 3 1193 2177 91 108 9 chr4 79715569 79715901 -75914219 + L1Md_F2 LINE L1 6218 6582 0 3 1193 20203 192 32 17 chr4 79715901 79716039 -75914081 + Lx2B LINE L1 4523 4643 -1243 3 1193 328 0 42 21 chr4 79716039 79716087 -75914033 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1193 20203 195 39 16 chr4 79716087 79717966 -75912154 + Lx2B LINE L1 4644 6570 -430 3 1193 261 22 43 21 chr4 79717995 79718042 -75912078 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1193 22 56 0 0 chr4 79718358 79718394 -75911726 + AT_rich Low_complexity Low_complexity 1 36 0 3 1193 798 317 41 52 chr4 79718414 79718780 -75911340 - MTEa LTR MaLR -5 374 13 3 1193 2092 329 102 61 chr4 79718795 79719947 -75910173 - MTEa-int LTR MaLR -2 1578 379 3 1193 11854 55 33 31 chr4 79719947 79721570 -75908550 - L1Md_F3 LINE L1 -2 6582 4896 3 1193 236 179 44 143 chr4 79721570 79721661 -75908459 + RMER20A LTR ERVK 170 251 -265 3 1193 11854 55 33 31 chr4 79721661 79722384 -75907736 - L1Md_F3 LINE L1 -2 4895 4142 3 1193 1133 299 68 3 chr4 79722387 79722753 -75907367 - MTEa-int LTR MaLR -1190 390 1 3 1193 1002 89 0 70 chr4 79722973 79722988 -75907132 - B1_Mus2 SINE Alu -1 146 136 3 1193 354 74 0 0 chr4 79722988 79723042 -75907078 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 1193 1002 89 0 70 chr4 79723042 79723183 -75906937 - B1_Mus2 SINE Alu -12 135 1 3 1193 1022 292 55 38 chr4 79723261 79723820 -75906300 - L1_Rod LINE L1 -757 5090 4522 3 1193 234 0 0 0 chr4 79723949 79723975 -75906145 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1193 549 0 0 0 chr4 79723975 79724035 -75906085 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1193 1307 234 38 20 chr4 79724121 79724462 -75905658 - RLTR15 LTR ERVK -12 347 1 3 1193 1059 174 5 0 chr4 79724462 79724657 -75905463 - RMER6A LTR ERVK -49 641 446 3 1193 1489 154 19 12 chr4 79724663 79724920 -75905200 - RMER6A LTR ERVK -494 262 4 3 1193 910 258 63 22 chr4 79724920 79725190 -75904930 - MT2A LTR ERVL -250 283 3 3 1193 4651 249 49 22 chr4 79725192 79726477 -75903643 - MERVL_2A-int LTR ERVL 0 5761 4442 3 1193 623 100 115 16 chr4 79727009 79727131 -75902989 + Lx2A LINE L1 6870 7003 -5 3 1193 445 269 0 28 chr4 79727204 79727311 -75902809 - RSINE1 SINE B4 -51 114 11 3 1193 529 287 15 0 chr4 79729158 79729294 -75900826 - B1F SINE Alu -11 138 1 3 1193 289 262 47 52 chr4 79730666 79730859 -75899261 + RMER17C LTR ERVK 82 273 -137 3 1193 564 42 0 0 chr4 79731300 79731371 -75898749 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 3 1193 494 31 16 0 chr4 79731371 79731434 -75898686 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 3 1193 23 0 0 0 chr4 79732089 79732112 -75898008 + AT_rich Low_complexity Low_complexity 1 23 0 3 1193 21 36 0 0 chr4 79732366 79732394 -75897726 + AT_rich Low_complexity Low_complexity 1 28 0 3 1193 5273 248 30 13 chr4 79732398 79733640 -75896480 - Lx5 LINE L1 -9 7041 5777 3 1193 3499 36 2 0 chr4 79733640 79734061 -75896059 + L1Md_A LINE L1 6161 6582 0 3 1193 5273 248 30 13 chr4 79734061 79734105 -75896015 - Lx5 LINE L1 -1274 5776 5734 3 1193 2675 198 24 0 chr4 79734107 79734611 -75895509 + RMER20A LTR ERVK 1 516 0 3 1193 3071 157 80 2 chr4 79734611 79735185 -75894935 - Lx5 LINE L1 -147 5730 5112 3 1193 459 0 0 0 chr4 79735354 79735405 -75894715 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1193 394 368 46 15 chr4 79735421 79735617 -75894503 + Tigger5 DNA MER2_type 18 219 -2187 3 1193 22 88 0 0 chr4 79736071 79736128 -75893992 + AT_rich Low_complexity Low_complexity 1 57 0 3 1193 456 308 46 51 chr4 79736744 79736939 -75893181 - B3A SINE B2 -4 194 1 3 1193 268 260 65 86 chr4 79737026 79737165 -75892955 + B1F SINE Alu 5 140 -9 3 1193 2753 274 66 31 chr4 79737803 79738728 -75891392 - Lx7 LINE L1 -59 7637 6681 3 1193 1328 264 22 65 chr4 79738705 79739151 -75890969 - L1_Mur3 LINE L1 -21 5859 5433 3 1193 970 165 216 113 chr4 79739151 79739452 -75890668 + RMER19C LTR ERVK 1 332 -279 3 1193 1101 258 88 9 chr4 79739453 79739770 -75890350 + Lx4B LINE L1 6700 7041 -17 3 1193 520 356 28 19 chr4 79739776 79739988 -75890132 + RCHARR1 DNA MER1_type 68 281 -693 3 1193 288 0 0 0 chr4 79740008 79740040 -75890080 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 3 1193 2760 167 74 2 chr4 79740040 79740696 -75889424 - L1_Mur2 LINE L1 -4010 1867 1150 3 1193 4828 205 24 15 chr4 79740716 79741928 -75888192 - Lx3C LINE L1 -5 6971 5455 3 1193 180 0 0 0 chr4 79741928 79741948 -75888172 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1193 3284 184 18 10 chr4 79741948 79742124 -75887996 - Lx3C LINE L1 -432 5454 5269 3 1193 714 211 71 22 chr4 79742108 79742292 -75887828 - L1_Mur2 LINE L1 -5924 1162 970 3 1193 355 333 40 20 chr4 79742320 79742571 -75887549 - L1_Mur2 LINE L1 -6382 704 449 3 1193 1595 220 38 12 chr4 79742586 79743009 -75887111 - L1_Mur3 LINE L1 -585 5295 4862 3 1193 996 103 7 0 chr4 79743178 79743324 -75886796 + B1_Mus2 SINE Alu 1 147 0 3 1193 5879 173 35 94 chr4 79743712 79745065 -75885055 - Lx3_Mus LINE L1 -7 7002 5738 3 1193 4447 131 28 32 chr4 79745065 79745877 -75884243 + RMER17D2 LTR ERVK 1 809 0 3 1193 5879 93 2 20 chr4 79745877 79746129 -75883991 - Lx3_Mus LINE L1 -146 5740 5488 3 1193 997 182 5 36 chr4 79746834 79747056 -75883064 - Lx2A1 LINE L1 0 7008 6794 3 1193 326 264 14 0 chr4 79748334 79748406 -75881714 + B1_Mur1 SINE Alu 56 128 -21 3 1193 26 30 0 0 chr4 79748901 79748934 -75881186 + AT_rich Low_complexity Low_complexity 1 33 0 3 1193 2212 190 12 10 chr4 79749171 79749570 -75880550 - Lx4A LINE L1 -135 6923 6524 3 1193 372 220 48 29 chr4 79749603 79749706 -75880414 + Lx4A LINE L1 6952 7056 -2 3 1193 5097 114 41 15 chr4 79749744 79750544 -75879576 - Lx LINE L1 -7 6647 5827 3 1193 2175 113 66 9 chr4 79750557 79750905 -75879215 - Lx3A LINE L1 -7 6974 6607 3 1193 3832 185 11 0 chr4 79750906 79751610 -75878510 - L1_Mm LINE L1 -267 5616 4905 3 1193 347 373 95 63 chr4 79751762 79752014 -75878106 + B4A SINE B4 9 268 -24 3 1193 263 187 0 39 chr4 79752341 79752419 -75877701 + CT-rich Low_complexity Low_complexity 2 76 0 3 1193 311 247 62 0 chr4 79752493 79752590 -75877530 - L1MA4 LINE L1 -394 5906 5804 3 1193 259 402 0 0 chr4 79752652 79752759 -75877361 - RSINE1 SINE B4 -21 144 38 3 1193 21 36 0 0 chr4 79753288 79753316 -75876804 + AT_rich Low_complexity Low_complexity 1 28 0 3 1193 24 32 0 0 chr4 79753601 79753632 -75876488 + AT_rich Low_complexity Low_complexity 1 31 0 3 1193 12722 62 10 2 chr4 79753933 79756254 -75873866 - L1Md_F2 LINE L1 -12 6570 4237 3 1193 485 317 59 0 chr4 79756390 79756576 -75873544 + B3A SINE B2 1 197 -1 3 1193 22 35 0 0 chr4 79757571 79757600 -75872520 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 436 293 60 49 chr4 79757866 79758103 -75872017 + L1M4 LINE L1 2653 2894 -3252 3 1193 19417 88 4 7 chr4 79758113 79759871 -75870249 + L1Md_F2 LINE L1 2847 4611 -1272 3 1193 3894 51 0 0 chr4 79759871 79760345 -75869775 + L1Md_T LINE L1 6109 6582 0 3 1193 19417 88 4 7 chr4 79760345 79761333 -75868787 + L1Md_F2 LINE L1 4612 5585 -298 3 1193 6908 106 8 9 chr4 79761334 79762330 -75867790 + L1Md_F2 LINE L1 5587 6581 -1 3 1193 1241 299 55 3 chr4 79762330 79762709 -75867411 - Lx6 LINE L1 -142 7318 6920 3 1193 1478 300 45 30 chr4 79763246 79763806 -75866314 + Lx8 LINE L1 6273 6840 -633 3 1193 25 31 0 0 chr4 79763958 79763990 -75866130 + AT_rich Low_complexity Low_complexity 1 32 0 3 1193 476 350 44 44 chr4 79764034 79764237 -75865883 - MT2A LTR ERVL -101 432 230 3 1193 594 184 0 0 chr4 79764237 79764362 -75865758 + (CAG)n Simple_repeat Simple_repeat 1 125 0 3 1193 1197 336 41 28 chr4 79764517 79765130 -75864990 + Lx8 LINE L1 6829 7449 -24 3 1193 470 289 127 14 chr4 79765164 79765475 -75864645 + L1M4 LINE L1 3026 3391 -2755 3 1193 690 193 62 6 chr4 79765615 79765729 -75864391 - L1_Mm LINE L1 -1027 4856 4742 3 1193 261 0 0 0 chr4 79765729 79765758 -75864362 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1193 690 193 62 6 chr4 79765758 79765805 -75864315 - L1_Mm LINE L1 -1142 4741 4687 3 1193 6351 209 27 106 chr4 79765806 79768094 -75862026 + Lx2B LINE L1 4882 6995 -5 3 1193 711 112 0 0 chr4 79768387 79768494 -75861626 + (GGA)n Simple_repeat Simple_repeat 3 109 0 3 1193 1145 98 12 0 chr4 79768494 79768667 -75861453 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 3 1193 244 275 43 0 chr4 79768802 79768871 -75861249 - Lx9 LINE L1 -711 6933 6862 3 1193 1985 307 78 28 chr4 79769120 79771087 -75859033 - Lx8 LINE L1 -183 7461 5236 3 1193 8566 101 6 1 chr4 79771083 79773120 -75857000 - L1_Mus1 LINE L1 0 6567 4519 3 1193 247 179 0 60 chr4 79773131 79773214 -75856906 + T-rich Low_complexity Low_complexity 1 78 0 3 1193 2491 180 31 0 chr4 79773247 79773724 -75856396 + L1_Mur2 LINE L1 5055 5546 -331 3 1193 251 222 27 108 chr4 79773724 79773835 -75856285 - RCHARR1 DNA MER1_type -388 586 485 3 1193 276 312 97 0 chr4 79773854 79773947 -75856173 + PB1D7 SINE Alu 19 120 0 3 1193 398 266 11 96 chr4 79773950 79774128 -75855992 + L1M2 LINE L1 4053 4235 -1911 3 1193 471 35 0 0 chr4 79774171 79774228 -75855892 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1193 650 340 103 18 chr4 79774292 79774565 -75855555 + ORR1D2 LTR MaLR 67 362 -8 3 1193 565 268 46 5 chr4 79774567 79774807 -75855313 + L1M2 LINE L1 5062 5308 -578 3 1193 1778 252 122 30 chr4 79774828 79775422 -75854698 + Lx9 LINE L1 6847 7483 -161 3 1193 323 60 20 0 chr4 79775422 79775472 -75854648 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1193 1778 252 122 30 chr4 79775472 79775604 -75854516 + Lx9 LINE L1 7484 7640 -4 3 1193 419 314 59 22 chr4 79775605 79775867 -75854253 + L1M2 LINE L1 5354 5609 -268 3 1193 499 306 61 6 chr4 79776780 79776961 -75853159 - B3A SINE B2 -6 192 2 3 1193 722 202 6 0 chr4 79777393 79777556 -75852564 + (TA)n Simple_repeat Simple_repeat 1 164 0 3 1193 29 0 0 0 chr4 79778813 79778842 -75851278 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 329 311 78 30 chr4 79779139 79779305 -75850815 + L1MD LINE L1 5410 5583 -2412 3 1193 24 32 0 0 chr4 79779333 79779364 -75850756 + AT_rich Low_complexity Low_complexity 1 31 0 3 1193 428 258 57 0 chr4 79779799 79779923 -75850197 + MLT1D LTR MaLR 372 502 -3 3 1193 307 371 44 17 chr4 79780101 79780282 -75849838 - MER87 LTR ERV1 -58 483 298 3 1193 8246 40 4 0 chr4 79781230 79782412 -75847708 - L1Md_F3 LINE L1 -3 6581 5396 3 1193 24 32 0 0 chr4 79782413 79782444 -75847676 + AT_rich Low_complexity Low_complexity 1 31 0 3 1193 5737 140 12 18 chr4 79782538 79783499 -75846621 + RMER17B LTR ERVK 1 956 -2 4 1193 1129 201 47 0 chr4 79783527 79783741 -75846379 + URR1A DNA MER1_type 3 226 0 4 1193 495 0 0 0 chr4 79783745 79783800 -75846320 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1193 2537 256 92 14 chr4 79783898 79784628 -75845492 + RMER13A LTR ERVK 14 728 -180 4 1193 455 147 0 13 chr4 79784640 79784716 -75845404 + RLTR14 LTR ERV1 308 382 0 4 1193 1610 226 68 61 chr4 79785334 79785806 -75844314 - RMER17A-int LTR ERVK -186 1542 1068 4 1193 488 283 34 60 chr4 79785844 79786111 -75844009 - RMER17A-int LTR ERVK -631 1097 838 4 1193 1056 215 39 34 chr4 79786325 79786583 -75843537 - RMER13B LTR ERVK -321 539 286 4 1193 8684 137 13 11 chr4 79786585 79787980 -75842140 - Lx2 LINE L1 -13 6984 5588 4 1193 558 0 0 0 chr4 79788513 79788575 -75841545 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1193 279 0 0 0 chr4 79788575 79788605 -75841515 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1193 363 266 0 31 chr4 79788719 79788882 -75841238 - RMER17C LTR ERVK -135 275 118 4 1193 248 318 58 12 chr4 79788963 79789049 -75841071 - RSINE1 SINE B4 -2 163 74 4 1193 310 298 24 24 chr4 79789078 79789205 -75840915 + B3 SINE B2 80 206 -10 4 1193 1179 272 59 59 chr4 79789220 79789681 -75840439 + Lx9 LINE L1 7180 7640 -4 4 1193 293 262 73 64 chr4 79789749 79789859 -75840261 + B1_Mus1 SINE Alu 1 111 -37 4 1193 279 0 0 0 chr4 79790027 79790058 -75840062 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1193 22 0 0 0 chr4 79790472 79790494 -75839626 + AT_rich Low_complexity Low_complexity 1 22 0 4 1193 198 143 0 0 chr4 79791992 79792027 -75838093 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1193 23 0 0 0 chr4 79792038 79792061 -75838059 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 4600 157 14 0 chr4 79792231 79792997 -75837123 - Lx2 LINE L1 -1 6996 6220 4 1193 8982 138 18 18 chr4 79792999 79794646 -75835474 + MusHAL1 LINE L1 753 2398 -314 4 1193 3906 128 65 26 chr4 79794650 79795373 -75834747 - Lx3A LINE L1 -4 6977 6227 4 1193 2860 155 37 46 chr4 79795430 79796019 -75834101 - RLTR25A LTR ERVK 0 1103 520 4 1193 660 45 0 0 chr4 79796100 79796188 -75833932 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1193 384 22 0 0 chr4 79797071 79797116 -75833004 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1193 252 0 0 0 chr4 79797120 79797148 -75832972 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1193 552 316 30 70 chr4 79797539 79797740 -75832380 + B3A SINE B2 6 198 0 4 1193 738 293 14 27 chr4 79797850 79798071 -75832049 + ID_B1 SINE B4 3 220 -4 4 1193 1382 227 78 17 chr4 79798650 79798915 -75831205 - ORR1C2 LTR MaLR 0 384 97 4 1193 3117 28 10 20 chr4 79798915 79799312 -75830808 - L1Md_F3 LINE L1 0 6584 6192 4 1193 1382 227 78 17 chr4 79799312 79799404 -75830716 - ORR1C2 LTR MaLR -288 96 5 4 1193 222 307 31 83 chr4 79799426 79799522 -75830598 - B1F SINE Alu -44 105 15 4 1193 1691 190 54 87 chr4 79799713 79800294 -75829826 - RLTR31A_Mm LTR ERVK -2 559 1 4 1193 35 24 0 0 chr4 79800581 79800623 -75829497 + AT_rich Low_complexity Low_complexity 1 42 0 4 1193 33 43 0 0 chr4 79800926 79800973 -75829147 + AT_rich Low_complexity Low_complexity 1 47 0 4 1193 23 0 0 0 chr4 79801319 79801342 -75828778 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 251 361 0 0 chr4 79802012 79802084 -75828036 + RSINE1 SINE B4 84 155 -10 4 1193 438 20 0 0 chr4 79802125 79802176 -75827944 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1193 189 74 0 0 chr4 79802333 79802360 -75827760 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1193 490 279 36 179 chr4 79802607 79802742 -75827378 - B3A SINE B2 0 198 84 4 1193 2190 15 114 0 chr4 79802742 79803004 -75827116 + RLTR10B LTR ERVK 1 292 0 4 1193 490 301 55 70 chr4 79803004 79803091 -75827029 - B3A SINE B2 -113 85 2 4 1193 246 297 188 7 chr4 79803654 79803803 -75826317 - B3 SINE B2 -2 214 39 4 1193 244 139 0 0 chr4 79803810 79803846 -75826274 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1193 5207 84 7 6 chr4 79803879 79804598 -75825522 - L1_Mus3 LINE L1 -6 6632 5913 4 1193 2853 81 0 51 chr4 79804717 79805148 -75824972 + L1Md_F2 LINE L1 6172 6580 -2 4 1193 21 36 0 0 chr4 79806114 79806142 -75823978 + AT_rich Low_complexity Low_complexity 1 28 0 4 1193 396 330 0 18 chr4 79807431 79807542 -75822578 - B1F SINE Alu -36 113 5 4 1193 324 327 8 34 chr4 79807636 79807753 -75822367 + MER5A1 DNA MER1_type 53 166 0 4 1193 1427 115 13 8 chr4 79808035 79808271 -75821849 + L1_Mus3 LINE L1 6395 6631 -7 4 1193 212 0 36 0 chr4 79808441 79808469 -75821651 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1193 284 120 20 0 chr4 79809598 79809648 -75820472 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 4 1193 273 317 47 20 chr4 79811128 79811276 -75818844 + MLT1J-int LTR MaLR 302 453 -934 4 1193 267 312 18 9 chr4 79812715 79812828 -75817292 - Lx8 LINE L1 -357 7116 7003 4 1193 2907 226 85 50 chr4 79812823 79813629 -75816491 - RMER1B Other Other -4 1062 316 4 1193 785 244 108 5 chr4 79813688 79813902 -75816218 - Lx8 LINE L1 -509 6964 6729 4 1193 231 61 0 0 chr4 79814359 79814392 -75815728 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 1193 3889 58 85 8 chr4 79815278 79815798 -75814322 + LTRIS2 LTR ERV1 5 564 0 4 1193 239 286 101 10 chr4 79815911 79816010 -75814110 - MER92A LTR ERV1 -31 381 274 4 1193 302 340 29 0 chr4 79816018 79816121 -75813999 + MTEa LTR MaLR 34 139 -240 4 1193 3665 135 50 29 chr4 79816121 79816815 -75813305 + RLTR13D1 LTR ERVK 1 709 -97 4 1193 343 272 98 15 chr4 79816823 79816960 -75813160 + MTEa LTR MaLR 214 379 0 4 1193 2730 136 11 26 chr4 79817232 79817701 -75812419 + Lx2A1 LINE L1 6541 7002 -6 4 1193 21 0 0 0 chr4 79817701 79817722 -75812398 + AT_rich Low_complexity Low_complexity 1 21 0 4 1193 823 92 0 15 chr4 79818103 79818240 -75811880 + L1Md_F2 LINE L1 6448 6582 0 4 1193 823 92 0 15 chr4 79818240 79818259 -75811861 + L1Md_F2 LINE L1 6561 6578 -4 4 1193 25 0 0 0 chr4 79818376 79818401 -75811719 + AT_rich Low_complexity Low_complexity 1 25 0 4 1193 7516 165 39 17 chr4 79818645 79818731 -75811389 - Lx2B LINE L1 -5 6995 6919 4 1193 3516 145 37 61 chr4 79818731 79819497 -75810623 + RMER17A LTR ERVK 5 751 0 4 1193 7516 165 39 17 chr4 79819497 79820330 -75809790 - Lx2B LINE L1 -82 6918 6066 4 1193 486 0 0 0 chr4 79820330 79820384 -75809736 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1193 7516 170 35 14 chr4 79820384 79820972 -75809148 - Lx2B LINE L1 -935 6065 5456 4 1193 2004 136 167 3 chr4 79820979 79821356 -75808764 + Lx2B LINE L1 5004 5442 -435 4 1193 213 0 81 0 chr4 79821356 79821393 -75808727 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 149 3498 182 59 38 chr4 79822224 79822940 -75807180 - Lx5 LINE L1 -1099 5951 5217 4 1194 2639 53 15 0 chr4 79822940 79823277 -75806843 - L1_Mus1 LINE L1 -1 6566 6225 4 1194 3498 189 74 31 chr4 79823277 79823453 -75806667 - Lx5 LINE L1 -661 5216 5034 4 1194 243 286 16 16 chr4 79823641 79823705 -75806415 + MTD LTR MaLR 1 64 -357 4 1194 306 0 0 0 chr4 79823707 79823741 -75806379 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1194 588 313 69 22 chr4 79823938 79824215 -75805905 + MTD LTR MaLR 81 405 -14 4 1194 229 268 19 102 chr4 79824264 79824372 -75805748 - RLTR22_Mur LTR ERVK -499 1349 1251 4 1194 245 324 89 57 chr4 79825030 79825187 -75804933 - L1MC1 LINE L1 -9 6324 6163 4 1194 198 0 0 0 chr4 79825265 79825287 -75804833 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 1194 217 388 0 15 chr4 79825471 79825539 -75804581 + MIR SINE MIR 34 100 -108 4 1194 312 305 66 5 chr4 79826091 79826302 -75803818 + L1MA6 LINE L1 6071 6294 -6 4 1194 204 283 33 0 chr4 79826931 79826991 -75803129 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 4 1194 756 349 4 39 chr4 79828032 79828069 -75802051 - B4 SINE B4 -39 253 217 4 1194 207 100 0 0 chr4 79828069 79828099 -75802021 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 1194 756 349 4 39 chr4 79828099 79828320 -75801800 - B4 SINE B4 -76 216 4 4 1194 619 350 46 18 chr4 79828331 79828613 -75801507 - Tigger7 DNA MER2_type -2193 298 9 4 1194 248 277 29 44 chr4 79828668 79828804 -75801316 + L1MD1 LINE L1 5859 5992 -250 4 1194 294 29 0 0 chr4 79828910 79828945 -75801175 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1194 513 0 0 0 chr4 79828946 79829003 -75801117 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1194 1496 303 68 21 chr4 79829032 79829950 -75800170 + Lx5 LINE L1 6146 7008 -42 4 1194 1413 239 96 84 chr4 79830038 79830165 -75799955 - RLTR42-int LTR ERVK -736 4786 4666 4 1194 264 30 0 0 chr4 79830165 79830198 -75799922 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1194 495 0 0 0 chr4 79830198 79830252 -75799868 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1194 1413 239 96 84 chr4 79830252 79830645 -75799475 - RLTR42-int LTR ERVK -857 4665 4260 4 1194 595 215 91 48 chr4 79830848 79831058 -75799062 - RLTR42-int LTR ERVK -3039 2483 2265 4 1194 21 57 0 0 chr4 79831063 79831098 -75799022 + AT_rich Low_complexity Low_complexity 1 35 0 4 1194 324 0 0 0 chr4 79831104 79831140 -75798980 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1194 585 0 0 0 chr4 79831141 79831206 -75798914 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1194 243 290 265 24 chr4 79831756 79831922 -75798198 + B3 SINE B2 1 206 -10 4 1194 1100 62 0 40 chr4 79832104 79832254 -75797866 - B1_Mm SINE Alu -1 146 3 4 1194 6259 40 1 4 chr4 79832254 79833027 -75797093 + L1Md_F2 LINE L1 5811 6581 -1 4 1194 243 287 94 60 chr4 79833065 79833737 -75796383 + L1MA4A LINE L1 4799 5492 -808 4 1194 2738 321 59 35 chr4 79833753 79834485 -75795635 + Lx8 LINE L1 6222 6949 -524 4 1194 588 14 0 0 chr4 79834485 79834554 -75795566 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1194 2738 321 59 35 chr4 79834554 79834985 -75795135 + Lx8 LINE L1 6950 7413 -60 4 1194 634 291 78 11 chr4 79835107 79835535 -75794585 + L1MA4A LINE L1 5492 5973 -324 4 1194 876 71 0 16 chr4 79835534 79835662 -75794458 - L1Md_Gf LINE L1 -6358 164 39 4 1194 7659 19 0 0 chr4 79835655 79836539 -75793581 + L1Md_T LINE L1 4703 5586 -297 4 1194 8481 30 0 0 chr4 79836539 79837533 -75792587 + L1Md_T LINE L1 5587 6580 -2 4 1194 537 16 0 0 chr4 79837909 79837971 -75792149 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1194 24 0 0 0 chr4 79841207 79841231 -75788889 + AT_rich Low_complexity Low_complexity 1 24 0 4 1194 8205 50 6 0 chr4 79842903 79844472 -75785648 - L1Md_F2 LINE L1 0 6582 5001 4 1194 2023 158 100 108 chr4 79844751 79845262 -75784858 - LTRIS4 LTR ERV1 0 507 1 4 1194 22 0 0 0 chr4 79845432 79845454 -75784666 + AT_rich Low_complexity Low_complexity 1 22 0 5 1194 201 94 0 0 chr4 79845486 79845518 -75784602 + (CAA)n Simple_repeat Simple_repeat 3 34 0 5 1194 197 426 80 34 chr4 79845523 79845698 -75784422 + L2 LINE L2 2899 3081 -338 5 1194 231 270 117 39 chr4 79846095 79846172 -75783948 - RSINE1 SINE B4 -77 88 6 5 1194 230 289 44 0 chr4 79846193 79846283 -75783837 - L1MA9 LINE L1 -165 6147 6054 5 1194 289 339 18 9 chr4 79846800 79846913 -75783207 + RMER12 LTR ERVK 743 856 -466 5 1194 488 352 0 25 chr4 79848999 79849162 -75780958 + RSINE1 SINE B4 7 165 0 5 1194 186 71 0 0 chr4 79849163 79849191 -75780929 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1194 706 246 0 0 chr4 79849256 79849394 -75780726 - B1_Mus1 SINE Alu -10 138 1 5 1194 225 169 0 0 chr4 79850976 79851035 -75779085 + T-rich Low_complexity Low_complexity 1 59 0 5 1194 1134 82 7 0 chr4 79851051 79851197 -75778923 - B1_Mm SINE Alu 0 147 1 5 1194 23 0 0 0 chr4 79851750 79851773 -75778347 + AT_rich Low_complexity Low_complexity 1 23 0 5 1194 1039 254 19 0 chr4 79852938 79853143 -75776977 + B3 SINE B2 1 209 -7 5 1194 1453 168 119 40 chr4 79853156 79853535 -75776585 + RLTR9E LTR ERVK 1 409 0 5 1194 337 296 136 32 chr4 79853611 79853863 -75776257 - RLTR15 LTR ERVK -68 291 48 5 1194 229 261 14 14 chr4 79853912 79853982 -75776138 - MLT1A1 LTR MaLR -70 320 251 5 1194 302 313 21 43 chr4 79854031 79854171 -75775949 - MLT1A1 LTR MaLR -268 140 4 5 1194 1092 74 0 7 chr4 79856324 79856473 -75773647 + B1_Mus1 SINE Alu 1 148 0 5 1194 190 105 16 66 chr4 79856501 79856562 -75773558 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 5 1194 3877 208 56 33 chr4 79857201 79858058 -75772062 + RMER19B LTR ERVK 1 877 -25 5 1194 348 348 25 13 chr4 79858140 79858297 -75771823 + MER31-int LTR ERV1 829 987 -3949 5 1194 387 73 0 0 chr4 79858991 79859046 -75771074 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1194 258 272 182 8 chr4 79859050 79859176 -75770944 + MER31-int LTR ERV1 1150 1297 -3639 5 1194 189 0 0 0 chr4 79859293 79859314 -75770806 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1194 1056 296 70 28 chr4 79860486 79860886 -75769234 + MTD LTR MaLR 3 419 0 5 1194 1935 311 50 97 chr4 79860900 79862205 -75767915 + MTD-int LTR MaLR 16 1258 0 5 1194 227 54 27 0 chr4 79862217 79862254 -75767866 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1194 877 272 66 55 chr4 79862255 79862527 -75767593 + MTD LTR MaLR 23 297 -122 5 1194 192 40 0 0 chr4 79862530 79862555 -75767565 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1194 278 262 130 53 chr4 79862587 79862833 -75767287 + MER31-int LTR ERV1 2723 2987 -1949 5 1194 1271 274 85 53 chr4 79863483 79864046 -75766074 - Lx9 LINE L1 -121 7523 6943 5 1194 4186 74 0 22 chr4 79864048 79864631 -75765489 + L1Md_F2 LINE L1 6001 6570 -12 5 1194 554 331 106 82 chr4 79864631 79865063 -75765057 + MER67C LTR ERV1 104 514 0 5 1194 369 345 60 6 chr4 79865063 79865229 -75764891 + MER31-int LTR ERV1 3822 3996 -940 5 1194 309 264 177 21 chr4 79865471 79865657 -75764463 + LTR37A LTR ERV1 43 257 -169 5 1194 618 344 32 25 chr4 79865684 79865967 -75764153 - MER89 LTR ERV1 -25 534 250 5 1194 255 262 71 0 chr4 79866252 79866336 -75763784 - Lx7 LINE L1 0 7696 7607 5 1194 24 32 0 0 chr4 79866915 79866946 -75763174 + AT_rich Low_complexity Low_complexity 1 31 0 5 1194 1262 72 0 0 chr4 79867097 79867263 -75762857 - L1Md_T LINE L1 0 6582 6417 5 1194 28 0 0 0 chr4 79867269 79867297 -75762823 + AT_rich Low_complexity Low_complexity 1 28 0 5 1194 2527 28 9 16 chr4 79867297 79867619 -75762501 - L1Md_F2 LINE L1 -13 6569 6250 5 1194 372 325 122 30 chr4 79867658 79867855 -75762265 + B4A SINE B4 1 215 -77 5 1194 232 294 81 19 chr4 79868465 79868581 -75761539 + PB1D7 SINE Alu 1 120 0 5 1194 24 0 0 0 chr4 79868678 79868702 -75761418 + AT_rich Low_complexity Low_complexity 1 24 0 5 1194 25543 88 5 1 chr4 79868841 79873170 -75756950 - L1Md_F2 LINE L1 -2 6580 2236 5 1194 3623 25 121 0 chr4 79873170 79873610 -75756510 - MT2_Mm LTR ERVL 0 493 1 5 1194 314 0 0 0 chr4 79873610 79873648 -75756472 - MERVL-int LTR ERVL 0 5485 5448 5 1194 375 179 46 35 chr4 79873648 79873735 -75756385 - ORR1A3-int LTR MaLR -1323 640 553 5 1194 32094 31 23 0 chr4 79873735 79877493 -75752627 - MERVL-int LTR ERVL -125 5360 1515 5 1194 11914 22 3 1 chr4 79877491 79878862 -75751258 - MERVL-int LTR ERVL -4111 1374 1 5 1194 3548 32 121 0 chr4 79878862 79879302 -75750818 - MT2_Mm LTR ERVL 0 493 1 5 1194 6718 88 4 36 chr4 79879302 79880044 -75750076 - L1Md_F2 LINE L1 -3643 2240 1531 5 1194 2686 67 0 3 chr4 79880044 79880389 -75749731 - ORR1A0 LTR MaLR 0 346 3 5 1194 6718 155 70 24 chr4 79880389 79881642 -75748478 - L1Md_F2 LINE L1 -4353 1530 237 5 1194 855 59 15 15 chr4 79881682 79881819 -75748301 - L1Md_F2 LINE L1 0 6582 6446 5 1194 23210 93 10 17 chr4 79881830 79885850 -75744270 + L1Md_A LINE L1 466 4455 -1428 5 1194 548 276 53 29 chr4 79886157 79886366 -75743754 + B3 SINE B2 1 214 -2 5 1194 34 42 0 0 chr4 79886828 79886876 -75743244 + AT_rich Low_complexity Low_complexity 1 48 0 5 1194 33944 45 19 19 chr4 79887065 79888711 -75741409 - L1Md_A LINE L1 -1 6581 4907 5 1194 234 283 31 61 chr4 79888711 79888809 -75741311 + RMER20A LTR ERVK 186 280 -236 5 1194 33944 45 19 19 chr4 79888809 79892446 -75737674 - L1Md_A LINE L1 -1 4906 1203 5 1194 6970 69 0 17 chr4 79892412 79893410 -75736710 - L1Md_Gf LINE L1 -5380 1142 162 5 1194 24 32 0 0 chr4 79893462 79893493 -75736627 + AT_rich Low_complexity Low_complexity 1 31 0 5 1194 242 264 131 41 chr4 79894409 79894630 -75735490 - L1MA6 LINE L1 -4 6296 6056 5 1194 1127 353 66 44 chr4 79895080 79895744 -75734376 - MTE-int LTR MaLR -78 1502 824 5 1194 1701 181 30 80 chr4 79895974 79896335 -75733785 + ORR1B1 LTR MaLR 47 389 -5 5 1194 813 249 131 76 chr4 79896345 79896689 -75733431 + ORR1D2 LTR MaLR 3 365 -5 5 1194 391 301 59 24 chr4 79896861 79897031 -75733089 + ORR1D2 LTR MaLR 1 176 -194 5 1194 433 112 41 0 chr4 79897031 79897129 -75732991 + (TCTCTG)n Simple_repeat Simple_repeat 6 107 0 5 1194 616 292 62 74 chr4 79897129 79897170 -75732950 + ORR1D2 LTR MaLR 170 182 -188 5 1194 395 19 19 0 chr4 79897170 79897222 -75732898 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 5 1194 616 263 34 58 chr4 79897222 79897413 -75732707 + ORR1D2 LTR MaLR 183 370 0 5 1194 565 382 71 18 chr4 79897419 79897800 -75732320 - MTE-int LTR MaLR -1173 407 7 5 1194 245 270 40 0 chr4 79898128 79898202 -75731918 - L1MA6 LINE L1 -327 5973 5897 5 1194 284 272 0 72 chr4 79898203 79898314 -75731806 + L1MA6 LINE L1 5786 5888 -409 5 1194 4304 191 67 12 chr4 79898755 79899610 -75730510 - RMER19B LTR ERVK 0 902 1 5 1194 476 81 14 0 chr4 79899854 79899928 -75730192 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1194 31 68 0 0 chr4 79899973 79900032 -75730088 + AT_rich Low_complexity Low_complexity 1 59 0 5 1194 393 215 96 70 chr4 79900049 79900164 -75729956 - B1_Mus1 SINE Alu -21 127 10 5 1194 257 333 12 60 chr4 79900097 79900180 -75729940 - ID_B1 SINE B4 -67 157 79 5 1194 22 35 0 0 chr4 79900191 79900220 -75729900 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 267 190 0 0 chr4 79900467 79900525 -75729595 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1194 312 269 69 21 chr4 79901138 79901282 -75728838 - L1MA6 LINE L1 -601 5699 5549 5 1194 289 273 87 17 chr4 79901343 79901548 -75728572 + L1MA5A LINE L1 6028 6250 -50 5 1194 743 255 18 24 chr4 79901845 79902010 -75728110 + B3 SINE B2 33 196 -20 5 1194 22 35 0 0 chr4 79902025 79902054 -75728066 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 782 196 7 7 chr4 79902222 79902361 -75727759 - ORR1C2 LTR MaLR -5 379 241 5 1194 528 16 0 0 chr4 79902361 79902422 -75727698 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1194 782 294 9 132 chr4 79902422 79902593 -75727527 - ORR1C2 LTR MaLR -143 251 1 5 1194 16194 28 24 23 chr4 79902714 79904361 -75725759 - L1Md_T LINE L1 -1 6581 4896 5 1194 228 183 46 77 chr4 79904361 79904426 -75725694 + RMER20A LTR ERVK 186 248 -268 5 1194 16194 28 24 23 chr4 79904426 79905556 -75724564 - L1Md_T LINE L1 -1 4895 3738 5 1194 2467 96 62 45 chr4 79905556 79905960 -75724160 - IAPLTR2a LTR ERVK 0 411 1 5 1194 5610 53 3 19 chr4 79905962 79906718 -75723402 - IAPEz-int LTR ERVK -2 6479 5736 5 1194 2063 75 0 0 chr4 79906717 79906995 -75723125 - IAPEz-int LTR ERVK -4845 1636 1359 5 1194 3956 93 17 20 chr4 79906995 79907745 -75722375 - IAPEz-int LTR ERVK -5819 662 10 5 1194 2432 93 65 45 chr4 79907771 79908174 -75721946 - IAPLTR2a LTR ERVK 0 411 1 5 1194 20035 30 0 12 chr4 79908174 79911525 -75718595 - L1Md_A LINE L1 -2140 3743 440 5 1194 352 234 0 59 chr4 79912136 79912254 -75717866 + Lx4B LINE L1 6935 7045 -13 5 1194 660 97 35 0 chr4 79912254 79912368 -75717752 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 5 1194 495 141 0 0 chr4 79912397 79912489 -75717631 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1194 3407 186 45 10 chr4 79912489 79913109 -75717011 - RLTR26 LTR ERVK 0 642 1 5 1194 843 105 0 0 chr4 79913110 79913234 -75716886 + (GA)n Simple_repeat Simple_repeat 1 124 0 5 1194 1273 112 16 5 chr4 79913234 79913423 -75716697 + MTB LTR MaLR 210 400 0 5 1194 386 292 95 90 chr4 79915091 79915364 -75714756 - MLT1C LTR MaLR -27 440 114 5 1194 32 43 0 0 chr4 79916237 79916283 -75713837 + AT_rich Low_complexity Low_complexity 1 46 0 5 1194 1198 55 0 0 chr4 79916711 79916856 -75713264 - B1_Mm SINE Alu -2 145 1 5 1194 306 335 17 79 chr4 79916886 79917064 -75713056 + B4A SINE B4 5 171 -121 5 1194 2612 90 20 10 chr4 79917098 79917502 -75712618 - L1_Mus4 LINE L1 -224 6412 6005 5 1194 453 36 0 0 chr4 79917502 79917557 -75712563 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 5 1194 204 40 0 0 chr4 79917557 79917581 -75712539 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 5 1194 694 139 0 18 chr4 79917588 79917698 -75712422 - B1_Mus2 SINE Alu 0 147 40 5 1194 5017 143 3 4 chr4 79917698 79918751 -75711369 - L1_Mus4 LINE L1 -634 6002 4952 5 1194 513 80 0 0 chr4 79918857 79918932 -75711188 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1194 405 0 0 0 chr4 79919099 79919144 -75710976 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1194 518 272 120 0 chr4 79919247 79919372 -75710748 + B1F SINE Alu 7 146 -3 5 1194 29 0 0 0 chr4 79919447 79919476 -75710644 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 224 312 98 30 chr4 79919658 79919790 -75710330 - L2a LINE L2 -281 3145 3005 5 1194 1265 150 0 0 chr4 79920220 79920420 -75709700 - 7SLRNA srpRNA srpRNA -98 216 17 5 1194 2921 128 13 17 chr4 79920454 79920915 -75709205 + MT2C_Mm LTR ERVL 3 461 -14 5 1194 8798 127 16 20 chr4 79920915 79922396 -75707724 + MERVL-int LTR ERVL 4 1479 -4006 5 1194 23632 114 9 12 chr4 79922392 79923805 -75706315 + MERVL-int LTR ERVL 1763 3157 -2328 5 1194 2487 109 31 17 chr4 79923805 79924159 -75705961 + RLTR10D LTR ERVK 1 359 0 5 1194 23632 114 9 12 chr4 79924159 79926352 -75703768 + MERVL-int LTR ERVL 3158 5356 -129 5 1194 788 136 8 0 chr4 79926451 79926583 -75703537 + MERVL-int LTR ERVL 5351 5483 -2 5 1194 3172 112 8 2 chr4 79926585 79927057 -75703063 + MT2C_Mm LTR ERVL 1 475 0 5 1194 357 93 0 0 chr4 79930224 79930278 -75699842 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 5 1194 272 233 45 23 chr4 79930696 79930784 -75699336 + Lx9 LINE L1 7386 7475 -169 5 1194 47 0 0 0 chr4 79930867 79930914 -75699206 + AT_rich Low_complexity Low_complexity 1 47 0 5 1194 24 32 0 0 chr4 79930990 79931021 -75699099 + AT_rich Low_complexity Low_complexity 1 31 0 5 1194 207 114 0 0 chr4 79931817 79931852 -75698268 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1194 1033 272 65 46 chr4 79932581 79933102 -75697018 + RMER1A Other Other 8 683 -383 6 1194 2869 175 75 60 chr4 79933102 79933860 -75696260 + RMER17B LTR ERVK 1 794 -15 6 1194 1290 236 69 6 chr4 79933871 79934234 -75695886 + RMER1B Other Other 678 1063 -3 6 1194 629 83 0 0 chr4 79934298 79934382 -75695738 + L1Md_F2 LINE L1 5501 5584 -299 6 1194 7434 66 16 4 chr4 79934382 79935354 -75694766 + L1Md_F2 LINE L1 5595 6578 -4 6 1194 14018 193 26 31 chr4 79935703 79936657 -75693463 + L1_Mur2 LINE L1 552 1493 -4384 6 1194 1058 85 0 14 chr4 79936657 79936800 -75693320 + B1_Mm SINE Alu 1 141 -6 6 1194 251 28 0 27 chr4 79936802 79936839 -75693281 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1194 14018 158 32 28 chr4 79936839 79937422 -75692698 + L1_Mur2 LINE L1 1494 2061 -3816 6 1194 378 0 0 0 chr4 79937422 79937464 -75692656 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1194 14018 158 32 28 chr4 79937464 79939306 -75690814 + L1_Mur2 LINE L1 2062 3928 -1949 6 1194 956 123 0 0 chr4 79939306 79939444 -75690676 + B1_Mus1 SINE Alu 1 138 -10 6 1194 482 0 17 0 chr4 79939444 79939502 -75690618 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1194 14018 158 32 28 chr4 79939502 79939891 -75690229 + L1_Mur2 LINE L1 3929 4330 -1547 6 1194 302 262 23 45 chr4 79939872 79940004 -75690116 + L1VL1 LINE L1 167 295 -6127 6 1194 23163 81 3 6 chr4 79939992 79945711 -75684409 + L1Md_F2 LINE L1 98 5586 -297 6 1194 7788 56 6 9 chr4 79945712 79946710 -75683410 + L1Md_F2 LINE L1 5588 6582 0 6 1194 2634 146 4 38 chr4 79946720 79947226 -75682894 + Lx3B LINE L1 5068 5556 -330 6 1194 902 154 27 0 chr4 79947226 79947375 -75682745 - ORR1A2 LTR MaLR -95 232 80 6 1194 3628 26 0 0 chr4 79947375 79947797 -75682323 - L1_Mm LINE L1 -257 5626 5205 6 1194 472 239 92 33 chr4 79947797 79947834 -75682286 - ORR1A3 LTR MaLR -197 132 93 6 1194 7939 38 0 1 chr4 79947834 79948789 -75681331 + L1Md_A LINE L1 5629 6582 0 6 1194 472 186 10 40 chr4 79948789 79948881 -75681239 - ORR1A3 LTR MaLR -233 93 1 6 1194 1842 132 18 0 chr4 79948881 79949162 -75680958 + Lx3B LINE L1 5628 5913 -1060 6 1194 306 391 22 80 chr4 79949209 79949434 -75680686 + B4A SINE B4 35 246 -46 6 1194 26 30 0 0 chr4 79949564 79949597 -75680523 + AT_rich Low_complexity Low_complexity 1 33 0 6 1194 930 103 0 0 chr4 79949656 79949792 -75680328 + (TTTTC)n Simple_repeat Simple_repeat 5 140 0 6 1194 386 139 0 14 chr4 79949794 79949867 -75680253 + CT-rich Low_complexity Low_complexity 2 73 0 6 1194 1467 262 30 26 chr4 79949896 79950323 -75679797 - Lx3C LINE L1 -89 6961 6470 6 1194 188 35 35 0 chr4 79950385 79950414 -75679706 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1194 1370 208 20 90 chr4 79950671 79951025 -75679095 + ORR1A4 LTR MaLR 1 329 0 6 1194 303 343 0 29 chr4 79951080 79951182 -75678938 + PB1D10 SINE Alu 7 105 -12 6 1194 221 400 0 0 chr4 79951356 79951431 -75678689 - ID2 SINE ID -4 79 5 6 1194 485 325 34 24 chr4 79951927 79952135 -75677985 - B3 SINE B2 -3 213 4 6 1194 318 62 62 0 chr4 79953740 79953805 -75676315 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 6 149 16368 23 0 0 chr4 79953831 79956420 -75673700 - L1Md_T LINE L1 -2 6580 3993 6 1195 379 275 93 73 chr4 79958862 79959375 -75670745 + MMERVK10C-int LTR ERVK 3022 3448 -4133 6 1195 352 264 58 34 chr4 79961299 79961549 -75668571 - L1MA9 LINE L1 -454 5858 5602 6 1195 338 252 62 10 chr4 79961547 79961690 -75668430 - L1MA9 LINE L1 -673 5489 5339 6 1195 5889 168 35 14 chr4 79961826 79963252 -75666868 - Lx LINE L1 -8 6646 5195 6 1195 4197 152 41 9 chr4 79963264 79964041 -75666079 - Lx LINE L1 -1015 4862 4061 6 1195 265 291 24 60 chr4 79964045 79964129 -75665991 - B1_Mur4 SINE Alu -65 85 5 6 1195 21 0 0 0 chr4 79964327 79964348 -75665772 + AT_rich Low_complexity Low_complexity 1 21 0 6 1195 232 305 0 0 chr4 79964879 79964938 -75665182 + MT2C_Mm LTR ERVL 304 362 -113 6 1195 209 288 0 17 chr4 79967177 79967237 -75662883 - L3 LINE CR1 -3522 967 909 6 1195 331 360 51 56 chr4 79967322 79967716 -75662404 + L1MEc LINE L1 338 729 -5671 6 1195 36 53 0 0 chr4 79968916 79968973 -75661147 + AT_rich Low_complexity Low_complexity 1 57 0 6 1195 378 0 0 0 chr4 79969350 79969392 -75660728 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6 1195 1033 134 0 0 chr4 79969392 79969549 -75660571 - B2_Mm2 SINE B2 -38 157 1 6 1195 186 43 0 0 chr4 79969730 79969753 -75660367 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1195 469 225 48 21 chr4 79970064 79970209 -75659911 - L1M3 LINE L1 -2398 3748 3600 6 1195 390 326 79 16 chr4 79970218 79970408 -75659712 - B3 SINE B2 -14 202 1 6 1195 663 250 68 77 chr4 79971507 79971799 -75658321 + MER67D LTR ERV1 35 369 -342 6 1195 29 47 0 0 chr4 79973316 79973359 -75656761 + AT_rich Low_complexity Low_complexity 1 43 0 6 1195 462 18 0 0 chr4 79973933 79973988 -75656132 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1195 240 325 65 49 chr4 79975131 79975254 -75654866 + RMER12 LTR ERVK 735 859 -463 6 1195 228 163 23 0 chr4 79975254 79975297 -75654823 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 6 1195 25 31 0 0 chr4 79975303 79975335 -75654785 + AT_rich Low_complexity Low_complexity 1 32 0 6 1195 3481 150 0 5 chr4 79976755 79977318 -75652802 - Lx3A LINE L1 -41 6940 6381 6 1195 264 86 0 0 chr4 79977331 79977366 -75652754 + Lx3C LINE L1 5784 5818 -1158 6 1195 4597 203 19 39 chr4 79977605 79978729 -75651391 + L1_Mur2 LINE L1 1283 2383 -3494 6 1195 1239 115 22 0 chr4 79978753 79978936 -75651184 + B2_Mm2 SINE B2 1 187 -8 6 1195 7054 98 14 6 chr4 79978945 79980635 -75649485 + L1_Mus2 LINE L1 4864 6566 0 6 1195 9604 202 38 29 chr4 79980655 79983106 -75647014 + L1_Mur2 LINE L1 2391 4863 -1014 6 1195 661 269 0 24 chr4 79983094 79983109 -75647011 + Lx5 LINE L1 6741 6755 -705 6 1195 858 119 0 0 chr4 79983109 79983243 -75646877 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 6 1195 1880 287 20 20 chr4 79983243 79983803 -75646317 + Lx5 LINE L1 6455 7001 -49 6 1195 1582 305 25 13 chr4 79983851 79984379 -75645741 - Lx8 LINE L1 -150 7323 6790 6 1195 511 321 94 49 chr4 79984531 79984680 -75645440 + L1MC1 LINE L1 5314 5475 -858 6 1195 396 0 0 0 chr4 79984680 79984724 -75645396 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1195 511 321 94 49 chr4 79984724 79985065 -75645055 + L1MC1 LINE L1 5476 5826 -507 6 1195 897 258 137 27 chr4 79985152 79985487 -75644633 - ORR1D1 LTR MaLR -2 372 1 6 1195 186 43 0 0 chr4 79985546 79985569 -75644551 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1195 264 242 163 73 chr4 79985617 79985795 -75644325 + L1MC1 LINE L1 5994 6187 -146 6 1195 440 240 106 16 chr4 79986019 79986142 -75643978 - ORR1D1 LTR MaLR -95 279 146 6 1195 4289 174 22 59 chr4 79986325 79986782 -75643338 + Lx4A LINE L1 5909 6370 -688 6 1195 524 184 9 17 chr4 79986782 79986898 -75643222 + Lx2 LINE L1 6877 6991 -6 6 1195 4289 174 22 59 chr4 79986898 79987321 -75642799 + Lx4A LINE L1 6371 6756 -302 6 1195 3487 295 113 33 chr4 79987420 79989221 -75640899 - Lx8 LINE L1 -1184 6289 4328 6 1195 354 45 0 0 chr4 79989221 79989265 -75640855 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 1195 3487 292 112 33 chr4 79989265 79990660 -75639460 - Lx8 LINE L1 -1553 4327 2853 6 1195 306 377 26 13 chr4 79990692 79990848 -75639272 + L1M2 LINE L1 3565 3722 -2421 6 1195 400 307 36 62 chr4 79990849 79991155 -75638965 - Lx8 LINE L1 -3052 2828 2531 6 1195 414 121 0 0 chr4 79991327 79991393 -75638727 + (TAGG)n Simple_repeat Simple_repeat 1 66 0 6 1195 1179 117 0 0 chr4 79991395 79991575 -75638545 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1195 893 315 162 15 chr4 79991587 79991987 -75638133 - MT2A LTR ERVL -74 459 1 6 1195 336 322 63 34 chr4 79991990 79992228 -75637892 - L1_Rod LINE L1 -3506 2341 2097 6 1195 2805 179 44 7 chr4 79992252 79992792 -75637328 - Lx4A LINE L1 0 7058 6499 6 1195 2685 205 19 20 chr4 79992792 79993330 -75636790 - RLTR20A LTR ERVK -4 537 1 6 1195 23378 144 40 24 chr4 79993332 79998327 -75631793 - Lx4A LINE L1 -552 6506 1425 6 1195 1091 84 0 0 chr4 79998327 79998470 -75631650 - B1_Mus1 SINE Alu -4 144 2 6 1195 23378 146 41 29 chr4 79998470 79998656 -75631464 - Lx4A LINE L1 -4453 1424 1236 6 1195 634 55 11 11 chr4 79998956 79999048 -75631072 + (GAGAA)n Simple_repeat Simple_repeat 4 95 0 6 1195 378 180 61 24 chr4 79999256 79999421 -75630699 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 1195 280 103 17 17 chr4 79999421 79999480 -75630640 + (TTATA)n Simple_repeat Simple_repeat 3 61 0 6 1195 1565 162 49 2 chr4 79999642 80000000 -75630120 - Lx4A LINE L1 -5853 1233 788 6 1195 992 179 42 0 chr4 80000009 80000199 -75629921 - L1_Mur2 LINE L1 -6307 405 208 1 1195 625 251 151 6 chr4 80000718 80000890 -75629230 + MTD LTR MaLR 3 199 -220 2 1195 5292 241 115 37 chr4 80001250 80002443 -75627677 + Lx6 LINE L1 5542 6873 -587 3 1195 387 41 0 0 chr4 80002443 80002492 -75627628 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1195 5292 244 63 43 chr4 80002492 80002934 -75627186 + Lx6 LINE L1 6874 7283 -177 3 1195 323 358 41 24 chr4 80004763 80004886 -75625234 + B1F SINE Alu 3 127 -22 5 1195 6812 92 27 18 chr4 80005040 80005362 -75624758 - L1_Mur1 LINE L1 -418 5468 5146 6 1195 5390 42 64 16 chr4 80005362 80006069 -75624051 + L1Md_F2 LINE L1 5838 6578 -4 7 1195 6812 92 27 18 chr4 80006069 80006401 -75623719 - L1_Mur1 LINE L1 -741 5145 4806 6 1195 573 28 0 0 chr4 80006401 80006472 -75623648 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1195 6812 92 27 18 chr4 80006472 80006865 -75623255 - L1_Mur1 LINE L1 -1081 4805 4411 6 1195 5163 100 16 0 chr4 80006865 80007596 -75622524 + Lx3_Mus LINE L1 6267 7009 0 9 1195 21 0 0 0 chr4 80007596 80007617 -75622503 + AT_rich Low_complexity Low_complexity 1 21 0 1 1195 480 281 137 73 chr4 80007983 80008417 -75621703 - MLT1E1 LTR MaLR -8 646 118 1 1195 874 250 34 5 chr4 80008896 80009101 -75621019 - Lx5 LINE L1 0 7050 6840 1 1195 1004 316 129 8 chr4 80009124 80009481 -75620639 - MTD LTR MaLR 0 419 20 1 1195 303 294 103 29 chr4 80009851 80010026 -75620094 - L1M4 LINE L1 -3629 2517 2330 1 1195 3184 48 8 0 chr4 80010141 80010534 -75619586 + MTA_Mm LTR MaLR 1 396 0 1 1195 1269 319 56 31 chr4 80010634 80011272 -75618848 + Lx9 LINE L1 6554 7207 -437 1 1195 267 189 0 0 chr4 80011302 80011355 -75618765 + CT-rich Low_complexity Low_complexity 2 54 0 1 1195 630 91 0 0 chr4 80011367 80011466 -75618654 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 1195 4493 127 23 1 chr4 80011706 80012399 -75617721 + Lx LINE L1 5947 6654 0 1 1195 258 324 28 0 chr4 80012786 80012857 -75617263 - MER2 DNA MER2_type -271 74 2 2 1195 2990 243 32 64 chr4 80012976 80013871 -75616249 - Lx7 LINE L1 -2 7694 6828 2 1195 3044 75 22 0 chr4 80014134 80014534 -75615586 - L1_Mus1 LINE L1 -333 6234 5826 2 1195 2175 84 47 0 chr4 80014534 80014862 -75615258 + L1_Mus1 LINE L1 6252 6567 0 2 1195 411 290 97 0 chr4 80015027 80015182 -75614938 - Lx8 LINE L1 -406 7067 6898 2 1195 245 53 35 35 chr4 80015194 80015252 -75614868 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 2 1195 7974 45 8 1 chr4 80015339 80016639 -75613481 - L1Md_F2 LINE L1 -8 6574 5268 2 1195 421 56 0 0 chr4 80016639 80016693 -75613427 - L1_Mm LINE L1 -576 5307 5254 2 1195 870 307 258 18 chr4 80016689 80017178 -75612942 - Lx8 LINE L1 -670 6803 6198 2 1195 347 341 86 38 chr4 80017219 80017405 -75612715 - B3 SINE B2 -13 203 9 2 1195 2858 119 42 2 chr4 80017416 80017863 -75612257 - L1_Mus4 LINE L1 -8 6628 6164 2 1195 432 250 97 7 chr4 80018127 80018329 -75611791 - Lx7 LINE L1 -1795 5901 5651 2 1195 4650 219 50 51 chr4 80018361 80018673 -75611447 - Lx7 LINE L1 -747 5133 4808 2 1195 459 0 0 0 chr4 80018673 80018724 -75611396 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1195 4650 219 50 51 chr4 80018724 80019809 -75610311 - Lx7 LINE L1 -1073 4807 3737 2 1195 3061 233 27 15 chr4 80019808 80020612 -75609508 + Lx6 LINE L1 5128 5943 -1517 3 1195 626 225 72 0 chr4 80020609 80020747 -75609373 + Lx6 LINE L1 6681 6828 -632 3 1195 12718 119 12 22 chr4 80020806 80021160 -75608960 - L1VL4 LINE L1 -2544 3339 3010 3 1195 1217 110 16 11 chr4 80021160 80021344 -75608776 - B2_Mm2 SINE B2 -9 186 2 3 1195 12718 119 12 22 chr4 80021344 80021887 -75608233 - L1VL4 LINE L1 -2874 3009 2459 3 1195 1329 50 11 6 chr4 80021887 80022068 -75608052 - L1Md_F3 LINE L1 -1 6583 6402 3 1195 12718 166 60 53 chr4 80022068 80024196 -75605924 - L1VL4 LINE L1 -3425 2458 300 3 1195 7194 198 41 6 chr4 80024556 80025978 -75604142 - Lx4A LINE L1 0 7058 5587 3 1195 8232 123 27 4 chr4 80026312 80027053 -75603067 - L1VL2 LINE L1 -282 3333 2588 3 1195 597 14 0 0 chr4 80027053 80027123 -75602997 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 3 1195 8232 123 27 4 chr4 80027123 80027741 -75602379 - L1VL2 LINE L1 -1028 2587 1944 3 1195 7345 93 0 1 chr4 80027752 80028795 -75601325 - L1_Mus1 LINE L1 -1 6566 5525 3 1195 5637 109 57 6 chr4 80028797 80029896 -75600224 - L1VL2 LINE L1 -1644 1971 809 3 1195 6987 101 2 2 chr4 80029931 80030901 -75599219 - L1Md_F2 LINE L1 -12 6570 5601 3 1195 3981 91 3 48 chr4 80030880 80031480 -75598640 + L1Md_F2 LINE L1 5039 5611 -272 3 1195 4066 136 14 6 chr4 80031473 80032102 -75598018 - L1VL2 LINE L1 -5511 824 191 3 1195 1308 308 24 11 chr4 80033535 80034067 -75596053 - L1_Rod LINE L1 0 5847 5309 3 1195 937 315 29 9 chr4 80034067 80034410 -75595710 - ORR1D2 LTR MaLR 0 370 21 4 1195 558 310 64 28 chr4 80034540 80034950 -75595170 - L1M2 LINE L1 -867 5279 4855 4 1195 547 251 28 81 chr4 80034961 80035208 -75594912 - L1_Mur3 LINE L1 -1960 3920 3687 4 1195 3036 251 43 12 chr4 80035862 80036661 -75593459 - MERVL_2A-int LTR ERVL -2710 3051 2229 4 1195 263 314 134 24 chr4 80036739 80036866 -75593254 + ERVL-B4-int LTR ERVL 3133 3273 -2441 4 1195 26 0 0 0 chr4 80036904 80036930 -75593190 + AT_rich Low_complexity Low_complexity 1 26 0 4 1195 4028 238 95 10 chr4 80036948 80038592 -75591528 - MERVL_2A-int LTR ERVL -3523 2238 456 4 1195 675 307 98 0 chr4 80038605 80038755 -75591365 + Lx6 LINE L1 7044 7212 -248 4 1195 243 0 0 0 chr4 80038755 80038782 -75591338 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1195 675 182 32 45 chr4 80038782 80038858 -75591262 + Lx6 LINE L1 7213 7267 -193 4 1195 449 233 8 16 chr4 80038902 80039024 -75591096 - MERVL_2A-int LTR ERVL -5394 367 247 4 1195 239 287 172 0 chr4 80039111 80039198 -75590922 - B3 SINE B2 -114 102 1 4 1195 25 0 0 0 chr4 80040462 80040487 -75589633 + AT_rich Low_complexity Low_complexity 1 25 0 4 1195 972 98 35 0 chr4 80041301 80041444 -75588676 - B1_Mus1 SINE Alu 0 148 1 5 1195 1009 128 45 0 chr4 80041457 80041613 -75588507 - B2_Mm2 SINE B2 -6 189 27 5 1195 441 321 64 21 chr4 80042506 80042694 -75587426 + MER3 DNA MER1_type 7 202 -7 5 1195 252 86 0 0 chr4 80043265 80043300 -75586820 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1195 21 71 0 0 chr4 80043510 80043552 -75586568 + AT_rich Low_complexity Low_complexity 1 42 0 5 1195 23 33 0 0 chr4 80044144 80044174 -75585946 + AT_rich Low_complexity Low_complexity 1 30 0 5 1195 27 73 0 0 chr4 80044258 80044313 -75585807 + AT_rich Low_complexity Low_complexity 1 55 0 5 1195 4056 58 31 2 chr4 80044313 80044828 -75585292 - L1_Mus1 LINE L1 0 6567 6038 5 1195 1013 185 115 80 chr4 80045810 80046060 -75584060 + RMER1C Other Other 929 1185 -157 5 1195 1587 191 146 92 chr4 80046060 80046453 -75583667 + RLTR16 LTR ERVK 1 413 -92 5 1195 567 0 0 0 chr4 80046453 80046516 -75583604 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1195 1587 191 146 92 chr4 80046516 80046601 -75583519 + RLTR16 LTR ERVK 414 504 -1 5 1195 1013 185 115 80 chr4 80046601 80046627 -75583493 + RMER1C Other Other 1186 1216 -126 5 1195 857 105 0 24 chr4 80046627 80046793 -75583327 + (TCC)n Simple_repeat Simple_repeat 3 164 0 6 1195 509 212 14 62 chr4 80046850 80046996 -75583124 + RMER1C Other Other 1204 1342 0 5 1195 21 0 0 0 chr4 80047069 80047090 -75583030 + AT_rich Low_complexity Low_complexity 1 21 0 6 1195 6384 171 13 0 chr4 80047461 80048595 -75581525 - L1_Mm LINE L1 -98 5785 4637 6 1195 440 35 0 0 chr4 80048593 80048650 -75581470 + L1_Mus4 LINE L1 5781 5837 -799 6 1195 4096 40 0 20 chr4 80048650 80049157 -75580963 + L1Md_T LINE L1 6086 6582 0 6 1195 5174 132 16 6 chr4 80049161 80049979 -75580141 + Lx LINE L1 5827 6652 -2 6 1195 725 307 36 20 chr4 80050012 80050318 -75579802 - Lx7 LINE L1 -390 7306 6996 6 1195 370 348 26 0 chr4 80052794 80052909 -75577211 - B1F SINE Alu -31 118 1 6 1195 2456 92 46 55 chr4 80054810 80055225 -75574895 + IAPLTR2a LTR ERVK 1 411 0 6 1195 11722 38 22 8 chr4 80055235 80056658 -75573462 + IAPEz-int LTR ERVK 35 1477 -5004 7 1195 1866 95 8 0 chr4 80056653 80056905 -75573215 + IAPEz-int LTR ERVK 2244 2497 -5183 7 1195 932 73 24 0 chr4 80056902 80057025 -75573095 + IAPEz-int LTR ERVK 4785 4910 -2770 7 1195 26275 11 7 2 chr4 80057025 80059967 -75570153 + IAPEz-int LTR ERVK 3525 6481 0 7 1195 2430 94 46 55 chr4 80059967 80060382 -75569738 + IAPLTR2a LTR ERVK 1 411 0 7 1195 2853 85 5 0 chr4 80060737 80061124 -75568996 - MTB LTR MaLR -11 389 1 7 1195 468 156 0 0 chr4 80061500 80061590 -75568530 + GA-rich Low_complexity Low_complexity 3 92 0 7 1195 272 263 127 0 chr4 80063496 80063614 -75566506 - L1MA4A LINE L1 -293 6010 5878 7 1195 563 312 138 0 chr4 80063801 80064019 -75566101 + RMER15 LTR ERVL 291 538 -37 7 1195 304 314 35 28 chr4 80064096 80064237 -75565883 + RMER15-int LTR ERVL 194 335 -4664 7 1195 2485 361 63 56 chr4 80064296 80066191 -75563929 + RMER15-int LTR ERVL 258 2166 -2833 7 1195 438 20 0 0 chr4 80066313 80066364 -75563756 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1195 610 295 32 6 chr4 80066377 80066534 -75563586 - B3A SINE B2 -35 163 3 7 1195 564 333 20 0 chr4 80066618 80066813 -75563307 + RMER15-int LTR ERVL 4168 4366 -633 7 1195 594 305 28 5 chr4 80068956 80069167 -75560953 - B3 SINE B2 0 216 1 7 1195 300 281 65 7 chr4 80069171 80069325 -75560795 - L1MB7 LINE L1 -2 6182 6020 7 1195 231 260 13 40 chr4 80069344 80069420 -75560700 - MTEb LTR MaLR 0 379 306 8 1195 24 0 0 0 chr4 80069429 80069453 -75560667 + AT_rich Low_complexity Low_complexity 1 24 0 8 1195 318 305 86 55 chr4 80070696 80070859 -75559261 - RMER15 LTR ERVL -140 435 268 8 1195 31862 103 13 7 chr4 80070955 80077298 -75552822 - L1Md_F2 LINE L1 0 6582 201 8 1195 43 76 0 0 chr4 80077836 80077928 -75552192 + AT_rich Low_complexity Low_complexity 1 92 0 8 1195 1406 317 66 12 chr4 80078241 80078280 -75551840 - MT2A LTR ERVL -5 528 490 8 1195 432 37 0 0 chr4 80078280 80078334 -75551786 + (CATA)n Simple_repeat Simple_repeat 4 57 0 8 1195 1406 317 66 12 chr4 80078334 80078795 -75551325 - MT2A LTR ERVL -44 489 2 8 1195 465 312 84 49 chr4 80079087 80079350 -75550770 + MLT1G1 LTR MaLR 1 272 -307 8 1195 288 339 145 0 chr4 80079461 80079585 -75550535 + MLT1G1 LTR MaLR 435 576 -3 8 1195 381 93 0 0 chr4 80079628 80079682 -75550438 + (CCCCCT)n Simple_repeat Simple_repeat 2 55 0 8 1195 234 0 0 0 chr4 80079693 80079719 -75550401 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1195 21 36 0 0 chr4 80079896 80079924 -75550196 + AT_rich Low_complexity Low_complexity 1 28 0 9 1195 306 0 0 0 chr4 80079956 80079990 -75550130 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1195 615 120 0 0 chr4 80079990 80080107 -75550013 + (GA)n Simple_repeat Simple_repeat 2 118 0 9 1195 327 288 17 8 chr4 80083702 80083821 -75546299 + L1M2 LINE L1 4370 4489 -1654 9 1195 470 268 7 7 chr4 80083894 80084048 -75546072 - L1_Mur3 LINE L1 -1076 4804 4651 9 149 870 276 133 71 chr4 80084046 80085051 -75545069 - Lx9 LINE L1 -1079 6565 5474 9 1196 213 39 0 0 chr4 80085059 80085085 -75545035 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1196 188 111 0 27 chr4 80085131 80085168 -75544952 + (TTA)n Simple_repeat Simple_repeat 1 36 0 9 1196 2486 256 58 32 chr4 80085175 80086166 -75543954 - Lx9 LINE L1 -1765 4082 3067 9 1196 336 258 11 11 chr4 80086170 80086264 -75543856 - Lx9 LINE L1 -3022 2825 2732 9 1196 195 343 25 100 chr4 80086673 80086793 -75543327 - MIRm SINE MIR -146 130 20 9 1196 473 283 124 48 chr4 80087009 80087451 -75542669 + L1M2 LINE L1 5298 5773 -524 9 1196 1216 41 0 7 chr4 80087528 80087675 -75542445 + B1_Mus1 SINE Alu 3 148 0 9 1196 186 71 0 0 chr4 80087677 80087705 -75542415 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1196 32 0 0 0 chr4 80088416 80088448 -75541672 + AT_rich Low_complexity Low_complexity 1 32 0 1 1196 22 0 0 0 chr4 80088919 80088941 -75541179 + AT_rich Low_complexity Low_complexity 1 22 0 1 1196 429 36 0 0 chr4 80090087 80090142 -75539978 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1196 699 75 0 0 chr4 80090142 80090248 -75539872 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 1196 1116 217 187 71 chr4 80090251 80090662 -75539458 - MT2A LTR ERVL -74 459 1 1 1196 444 193 0 33 chr4 80090908 80090999 -75539121 + MT2B LTR ERVL 1 88 -445 1 1196 3814 197 81 62 chr4 80091013 80092069 -75538051 - Lx4B LINE L1 0 7058 5984 1 1196 704 289 15 50 chr4 80092087 80092375 -75537745 + MT2B LTR ERVL 225 542 -59 1 1196 315 0 0 0 chr4 80092379 80092414 -75537706 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1196 676 390 59 15 chr4 80092510 80092783 -75537337 - B4 SINE B4 -2 290 6 1 1196 189 94 0 0 chr4 80092845 80092877 -75537243 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1196 681 156 0 67 chr4 80092881 80093046 -75537074 - Lx2A1 LINE L1 0 7008 6855 1 1196 521 289 0 0 chr4 80093132 80093246 -75536874 + B3 SINE B2 6 119 -97 1 1196 795 290 62 23 chr4 80093258 80093562 -75536558 - RLTR18B LTR ERVK -1 511 196 1 1196 529 318 83 63 chr4 80093612 80093904 -75536216 - RLTR18B LTR ERVK -302 314 13 1 1196 353 312 116 8 chr4 80093873 80094002 -75536118 + B3 SINE B2 68 210 -6 1 1196 1788 54 5 0 chr4 80094086 80094309 -75535811 + L1_Mus1 LINE L1 6344 6567 0 1 1196 321 68 0 0 chr4 80094649 80094693 -75535427 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1196 588 280 8 8 chr4 80094697 80094823 -75535297 - RSINE1 SINE B4 -37 128 3 1 1196 332 269 37 0 chr4 80095586 80095694 -75534426 - L1MA6 LINE L1 -365 5935 5824 1 1196 22 35 0 0 chr4 80095939 80095968 -75534152 + AT_rich Low_complexity Low_complexity 1 29 0 1 1196 474 297 30 85 chr4 80096711 80096910 -75533210 + B3 SINE B2 18 205 -11 1 1196 765 305 135 27 chr4 80097103 80097437 -75532683 + ORR1D2 LTR MaLR 1 370 0 1 1196 985 335 3 29 chr4 80097437 80097778 -75532342 + ORR1D2-int LTR MaLR 1 332 -1038 1 1196 26625 81 103 10 chr4 80097778 80102486 -75527634 + L1Md_F3 LINE L1 446 5585 -298 1 1196 7900 54 3 0 chr4 80102487 80103482 -75526638 + L1Md_F3 LINE L1 5587 6584 0 1 1196 1243 269 40 72 chr4 80103482 80103926 -75526194 + ORR1D2-int LTR MaLR 316 745 -625 1 1196 25183 137 33 10 chr4 80103949 80107001 -75523119 - L1_Mus3 LINE L1 -26 6612 3479 1 1196 185 0 40 0 chr4 80107001 80107026 -75523094 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1196 25183 154 27 17 chr4 80107026 80109816 -75520304 - L1_Mus3 LINE L1 -2405 3478 695 1 1196 4668 83 1 23 chr4 80109968 80110624 -75519496 - L1_Mus1 LINE L1 -1 6566 5925 1 1196 32169 90 8 15 chr4 80113148 80116552 -75513568 + L1Md_F3 LINE L1 441 3806 -2077 1 1196 4217 62 4 0 chr4 80116552 80117099 -75513021 + L1Md_F3 LINE L1 6036 6584 0 1 1196 32169 70 6 11 chr4 80117099 80118876 -75511244 + L1Md_F3 LINE L1 3807 5585 -298 1 1196 8264 36 1 5 chr4 80118877 80119878 -75510242 + L1Md_F3 LINE L1 5587 6583 -1 1 1196 546 105 11 0 chr4 80120613 80120708 -75509412 + L1_Mus3 LINE L1 6534 6629 -9 1 1196 33 0 0 0 chr4 80121227 80121260 -75508860 + AT_rich Low_complexity Low_complexity 1 33 0 1 1196 21 36 0 0 chr4 80121327 80121355 -75508765 + AT_rich Low_complexity Low_complexity 1 28 0 1 1196 218 250 0 18 chr4 80122356 80122413 -75507707 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1196 1072 80 0 0 chr4 80123511 80123649 -75506471 + B1_Mus2 SINE Alu 1 138 -9 1 1196 266 0 29 0 chr4 80123649 80123683 -75506437 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1196 526 324 31 41 chr4 80123777 80124067 -75506053 + B4A SINE B4 2 288 -4 1 1196 218 221 29 0 chr4 80124166 80124234 -75505886 + GA-rich Low_complexity Low_complexity 3 72 0 1 1196 686 252 0 0 chr4 80124387 80124526 -75505594 + B1_Mur2 SINE Alu 2 140 -9 1 1196 258 32 0 0 chr4 80124526 80124557 -75505563 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1196 791 244 75 43 chr4 80124857 80125100 -75505020 - ORR1D1 LTR MaLR 0 384 127 1 1196 2346 84 6 3 chr4 80125100 80125423 -75504697 + L1_Mus2 LINE L1 6242 6565 -1 1 1196 723 281 50 129 chr4 80125423 80125596 -75504524 - ORR1D1 LTR MaLR -252 132 1 1 1196 533 234 0 35 chr4 80126142 80126257 -75503863 - PB1D9 SINE Alu 0 120 10 1 1196 300 372 19 10 chr4 80126165 80126268 -75503852 - B4 SINE B4 -105 187 84 1 1196 3368 268 21 13 chr4 80126322 80127228 -75502892 - Lx9 LINE L1 -97 7547 6635 1 1196 7627 74 3 0 chr4 80127245 80128829 -75501291 - L1Md_F2 LINE L1 -5 6577 4987 1 1196 8813 16 1 2 chr4 80128854 80130543 -75499577 - L1Md_A LINE L1 0 6582 4895 1 1196 1339 271 122 24 chr4 80130514 80131155 -75498965 - Lx9 LINE L1 -1000 6644 5835 1 1196 1665 183 21 9 chr4 80131277 80131603 -75498517 + ORR1B2 LTR MaLR 36 365 -2 1 1196 237 182 0 43 chr4 80131607 80131699 -75498421 + CT-rich Low_complexity Low_complexity 4 91 0 1 1196 21 36 0 0 chr4 80133556 80133584 -75496536 + AT_rich Low_complexity Low_complexity 1 28 0 1 1196 21 57 0 0 chr4 80134069 80134104 -75496016 + AT_rich Low_complexity Low_complexity 1 35 0 1 1196 769 180 71 42 chr4 80134148 80134316 -75495804 + B2_Mm2 SINE B2 1 173 -22 1 1196 3275 158 4 0 chr4 80134323 80134860 -75495260 - Lx2 LINE L1 0 5883 5345 1 1196 4863 164 39 25 chr4 80134857 80135306 -75494814 + Lx2 LINE L1 5884 6325 -672 1 1196 267 31 0 0 chr4 80135306 80135338 -75494782 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1196 4863 164 39 25 chr4 80135338 80135843 -75494277 + Lx2 LINE L1 6326 6850 -147 1 1196 940 287 62 48 chr4 80137631 80137835 -75492285 - ORR1D1 LTR MaLR -6 368 169 1 1196 297 0 0 0 chr4 80137835 80137868 -75492252 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 1 1196 216 0 0 0 chr4 80137870 80137894 -75492226 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1196 522 0 0 0 chr4 80137894 80137951 -75492169 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1196 940 287 62 48 chr4 80137951 80138097 -75492023 - ORR1D1 LTR MaLR -206 168 10 1 1196 453 50 0 0 chr4 80138100 80138160 -75491960 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1196 1609 176 60 3 chr4 80139830 80140166 -75489954 - Lx2A1 LINE L1 -2 7006 6652 1 1196 3398 238 94 34 chr4 80140297 80141293 -75488827 - ORR1D1-int LTR MaLR -453 1056 1 1 1196 912 199 54 19 chr4 80141293 80141498 -75488622 - ORR1D1 LTR MaLR 0 394 183 1 1196 245 312 0 0 chr4 80141705 80141769 -75488351 - RLTR31_Mur LTR ERVK 0 553 490 1 1196 310 39 59 0 chr4 80142271 80142322 -75487798 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1196 7967 65 10 2 chr4 80142552 80143638 -75486482 + L1_Mus3 LINE L1 5538 6632 -6 1 1196 23 0 0 0 chr4 80143795 80143818 -75486302 + AT_rich Low_complexity Low_complexity 1 23 0 1 1196 312 317 23 47 chr4 80143824 80143953 -75486167 - RSINE1 SINE B4 -36 129 4 1 1196 27 0 0 0 chr4 80143953 80143980 -75486140 + AT_rich Low_complexity Low_complexity 1 27 0 1 1196 2714 275 54 19 chr4 80145495 80146023 -75484097 - Lx9 LINE L1 -497 7147 6623 1 1196 1058 67 0 0 chr4 80146023 80146158 -75483962 + B1_Mm SINE Alu 1 135 -12 1 1196 815 55 0 9 chr4 80146158 80146268 -75483852 + (GAAAA)n Simple_repeat Simple_repeat 3 111 0 1 1196 2714 274 56 16 chr4 80146268 80146560 -75483560 - Lx9 LINE L1 -1022 6622 6313 1 1196 635 269 38 51 chr4 80146684 80146997 -75483123 - Lx9 LINE L1 -1595 6049 5741 1 1196 3698 216 85 15 chr4 80146977 80147650 -75482470 - L1_Rod LINE L1 -3544 2303 1576 1 1196 261 0 0 0 chr4 80147650 80147679 -75482441 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1196 3698 216 85 15 chr4 80147679 80148033 -75482087 - L1_Rod LINE L1 -4272 1575 1206 1 1196 261 0 0 0 chr4 80148062 80148091 -75482029 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1196 977 121 6 43 chr4 80148092 80148256 -75481864 - B2_Mm2 SINE B2 -37 158 1 1 1196 1268 234 61 107 chr4 80148256 80148734 -75481386 - Lx9 LINE L1 -6410 1198 743 1 1196 600 278 148 74 chr4 80149012 80149350 -75480770 + MLT1A1 LTR MaLR 25 387 -21 1 1196 429 276 45 45 chr4 80151113 80151246 -75478874 - ID_B1 SINE B4 -5 219 87 1 1196 564 343 29 83 chr4 80151432 80151842 -75478278 - MLT1B LTR MaLR -2 388 1 1 1196 246 306 53 40 chr4 80152044 80152119 -75478001 + MTEa LTR MaLR 20 95 -264 1 1196 1328 83 15 20 chr4 80152351 80152547 -75477573 - L1Md_F2 LINE L1 -1 6581 6387 1 1196 481 230 40 0 chr4 80152549 80152649 -75477471 - PB1D9 SINE Alu -8 112 9 1 1196 662 291 44 8 chr4 80152652 80152915 -75477205 + MTEa LTR MaLR 82 373 -6 1 1196 495 281 6 23 chr4 80153060 80153235 -75476885 - L1MA6 LINE L1 -1 6299 6128 1 1196 3127 152 13 6 chr4 80155286 80155815 -75474305 + Lx2A1 LINE L1 6471 7003 -5 1 1196 560 215 116 0 chr4 80156610 80156731 -75473389 + B1_Mur2 SINE Alu 15 149 0 1 1196 300 120 0 0 chr4 80156739 80156789 -75473331 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1196 305 309 20 20 chr4 80158127 80158226 -75471894 - MER67D LTR ERV1 -125 389 291 1 1196 453 269 90 0 chr4 80158294 80158439 -75471681 - MER67D LTR ERV1 -351 163 6 1 1196 428 198 6 47 chr4 80158507 80158677 -75471443 + CT-rich Low_complexity Low_complexity 2 164 0 1 1196 342 0 0 0 chr4 80158709 80158747 -75471373 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 1 1196 2867 141 33 12 chr4 80158747 80159236 -75470884 - Lx LINE L1 -15 6639 6141 1 1196 436 389 0 27 chr4 80159458 80159606 -75470514 + RSINE1 SINE B4 4 147 -18 1 1196 185 0 40 0 chr4 80159751 80159776 -75470344 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1196 2180 204 24 12 chr4 80159822 80160243 -75469877 + RMER20B LTR ERVK 1 426 -201 1 1196 380 242 17 19 chr4 80160257 80160367 -75469753 - PB1D10 SINE Alu -32 117 9 1 1196 216 340 75 28 chr4 80160284 80160390 -75469730 - B4 SINE B4 -109 183 73 1 1196 761 143 26 57 chr4 80160745 80160938 -75469182 - Lx2B LINE L1 -2 6998 6812 1 1196 1856 113 60 3 chr4 80161595 80161879 -75468241 - ORR1A2 LTR MaLR -1 326 27 1 1196 26 0 0 0 chr4 80162567 80162593 -75467527 + AT_rich Low_complexity Low_complexity 1 26 0 1 1196 297 0 0 0 chr4 80166010 80166043 -75464077 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1196 432 0 0 0 chr4 80166043 80166090 -75464030 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1196 368 313 43 9 chr4 80166452 80166568 -75463552 + B1F SINE Alu 1 120 -29 1 1196 639 199 76 8 chr4 80167097 80167191 -75462929 - B1_Mus1 SINE Alu 0 148 46 1 1196 432 37 0 0 chr4 80167191 80167245 -75462875 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1196 405 0 0 0 chr4 80167245 80167289 -75462831 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1196 639 199 76 8 chr4 80167289 80167325 -75462795 - B1_Mus1 SINE Alu -103 45 10 1 1196 688 309 111 59 chr4 80167695 80168138 -75461982 - RMER13A LTR ERVK -394 466 1 2 1196 22 35 0 0 chr4 80168180 80168209 -75461911 + AT_rich Low_complexity Low_complexity 1 29 0 2 1196 1456 209 63 137 chr4 80168489 80168606 -75461514 + Lx5 LINE L1 1879 1992 -3885 2 1196 1124 88 0 0 chr4 80168606 80168754 -75461366 + B1_Mus1 SINE Alu 1 148 0 2 1196 1456 209 63 137 chr4 80168754 80168816 -75461304 + Lx5 LINE L1 1993 2019 -3858 2 1196 2705 161 76 2 chr4 80168816 80169290 -75460830 + Lx2 LINE L1 6483 6991 -6 2 1196 1456 209 63 137 chr4 80169290 80169371 -75460749 + Lx5 LINE L1 2020 2064 -3813 2 1196 470 70 0 14 chr4 80169371 80169443 -75460677 + (CTA)n Simple_repeat Simple_repeat 3 73 0 2 1196 1456 209 63 137 chr4 80169443 80169780 -75460340 + Lx5 LINE L1 2065 2434 -3443 2 1196 6097 223 64 15 chr4 80169751 80171402 -75458718 + Lx5 LINE L1 5312 7045 -5 2 1196 433 336 60 0 chr4 80171504 80171638 -75458482 + ID_B1 SINE B4 81 222 -2 2 1196 1856 286 46 31 chr4 80171747 80172351 -75457769 + RLTR18 LTR ERVK 3 615 -1 2 1196 546 316 97 27 chr4 80172362 80172805 -75457315 - L1MA6 LINE L1 -8 6292 5819 2 1196 267 369 8 0 chr4 80172874 80172994 -75457126 - Lx9 LINE L1 -310 7334 7130 2 1196 357 24 0 0 chr4 80172996 80173038 -75457082 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1196 315 0 0 0 chr4 80173039 80173074 -75457046 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1196 243 0 0 0 chr4 80173074 80173100 -75457020 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1196 32 26 0 0 chr4 80173199 80173238 -75456882 + AT_rich Low_complexity Low_complexity 1 39 0 2 1196 1115 88 6 6 chr4 80173238 80173409 -75456711 - L1_Mus4 LINE L1 -15 6621 6451 2 1196 1495 115 0 0 chr4 80173409 80173626 -75456494 + L1_Mm LINE L1 5536 5752 -131 2 1196 787 297 44 60 chr4 80173644 80174012 -75456108 - Lx9 LINE L1 -489 7155 6742 2 1196 1126 285 88 10 chr4 80174022 80174433 -75455687 + Lx9 LINE L1 7122 7564 -80 2 1196 262 311 40 26 chr4 80174499 80174575 -75455545 + B4A SINE B4 216 292 0 2 1196 308 320 39 34 chr4 80174632 80174810 -75455310 - L1MA6 LINE L1 -179 6121 5943 2 1196 21 89 0 0 chr4 80174872 80174928 -75455192 + AT_rich Low_complexity Low_complexity 1 56 0 2 1196 345 39 0 0 chr4 80175404 80175455 -75454665 - Lx LINE L1 -7 6647 6597 2 1196 249 108 0 0 chr4 80175908 80175945 -75454175 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1196 464 117 0 13 chr4 80176306 80176384 -75453736 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1196 32 26 0 0 chr4 80176540 80176579 -75453541 + AT_rich Low_complexity Low_complexity 1 39 0 2 1196 24 32 0 0 chr4 80176698 80176729 -75453391 + AT_rich Low_complexity Low_complexity 1 31 0 2 1196 6856 218 41 67 chr4 80177397 80177946 -75452174 - Lx6 LINE L1 -1363 6097 5546 2 1196 3787 111 19 9 chr4 80177946 80178521 -75451599 - MT2B2 LTR ERVL -3 581 1 2 1196 6856 197 50 96 chr4 80178521 80179592 -75450528 - Lx6 LINE L1 -335 5545 4625 2 1196 210 37 0 0 chr4 80179592 80179619 -75450501 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1196 6856 197 50 96 chr4 80179619 80180233 -75449887 - Lx6 LINE L1 -1256 4624 3949 2 1196 329 0 24 0 chr4 80180346 80180387 -75449733 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1196 1369 312 106 16 chr4 80180421 80180810 -75449310 - L1_Mur3 LINE L1 -10 5870 5443 2 1196 3808 45 154 2 chr4 80180810 80181323 -75448797 - L1Md_F3 LINE L1 -1 6583 5993 2 1196 1369 312 106 16 chr4 80181323 80182012 -75448108 - L1_Mur3 LINE L1 -438 5442 4696 2 1196 254 115 72 10 chr4 80182324 80182421 -75447699 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 2 1196 246 354 30 20 chr4 80182473 80182574 -75447546 + MTEa LTR MaLR 36 137 -242 2 1196 495 346 56 44 chr4 80182618 80182869 -75447251 + MT2A LTR ERVL 176 429 -104 2 1196 673 317 110 3 chr4 80182961 80183262 -75446858 + MER2 DNA MER2_type 7 339 -6 2 1196 838 181 0 0 chr4 80183534 80183672 -75446448 + B1_Mur4 SINE Alu 11 148 -2 2 1196 2220 291 57 58 chr4 80184129 80184902 -75445218 + RMER1C Other Other 564 1335 -7 2 1196 1705 126 42 0 chr4 80184903 80185164 -75444956 + Lx3_Mus LINE L1 6725 6996 -13 2 1196 588 302 189 37 chr4 80186463 80187247 -75442873 + L1MC1 LINE L1 210 1112 -5396 2 1196 750 237 82 5 chr4 80187288 80187483 -75442637 + B3 SINE B2 1 210 -6 2 1196 400 294 136 35 chr4 80187537 80187847 -75442273 + L1MC1 LINE L1 1123 1463 -5045 2 1196 476 333 64 23 chr4 80188270 80188534 -75441586 - RLTR16 LTR ERVK -207 298 24 2 1196 516 77 0 0 chr4 80188634 80188712 -75441408 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1196 272 270 161 19 chr4 80189012 80189167 -75440953 + L1MC1 LINE L1 2616 2792 -3529 2 1196 456 277 150 18 chr4 80189420 80189920 -75440200 + L1MC1 LINE L1 3178 3743 -2578 2 1196 254 50 0 24 chr4 80189965 80190006 -75440114 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1196 808 178 11 6 chr4 80190092 80190267 -75439853 + GA-rich Low_complexity Low_complexity 3 178 0 2 1196 218 156 0 0 chr4 80190267 80190299 -75439821 + polypurine Low_complexity Low_complexity 3 34 0 2 1196 339 290 147 50 chr4 80190367 80191006 -75439114 + L1MC1 LINE L1 3957 4657 -1664 2 1196 276 303 0 0 chr4 80190993 80191059 -75439061 - RMER1C Other Other -866 476 411 2 1196 277 289 78 17 chr4 80191105 80191221 -75438899 - RMER1C Other Other -1214 128 6 2 1196 1576 234 122 96 chr4 80191252 80191828 -75438292 + RMER1C Other Other 744 1334 -8 2 1196 351 0 0 0 chr4 80191915 80191954 -75438166 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1196 531 31 0 0 chr4 80192033 80192098 -75438022 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1196 1946 165 57 23 chr4 80192111 80192465 -75437655 - Lx3C LINE L1 -206 6770 6405 2 1196 473 203 72 7 chr4 80192467 80192606 -75437514 + Lx3C LINE L1 6827 6974 -2 2 1196 22 0 0 0 chr4 80192606 80192628 -75437492 + AT_rich Low_complexity Low_complexity 1 22 0 2 1196 367 284 225 0 chr4 80192643 80192812 -75437308 + B3 SINE B2 5 211 -5 2 1196 445 293 101 93 chr4 80192838 80193394 -75436726 + L1MC1 LINE L1 5176 5746 -762 2 1196 680 237 7 0 chr4 80193394 80193529 -75436591 - B1_Mur2 SINE Alu -12 137 2 2 1196 445 326 116 73 chr4 80193529 80194051 -75436069 + L1MC1 LINE L1 5747 6282 -226 2 1196 1718 197 43 54 chr4 80194960 80195330 -75434790 - RLTR17 LTR ERVK -326 366 1 2 1196 6856 212 74 52 chr4 80195330 80197577 -75432543 - RMER3D-int LTR ERVK 0 2842 166 2 1196 468 0 0 0 chr4 80197578 80197630 -75432490 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 2 1196 1247 81 0 0 chr4 80197634 80197808 -75432312 - L1_Mus2 LINE L1 0 6566 6393 2 1196 474 264 45 0 chr4 80197809 80197919 -75432201 - RLTR17 LTR ERVK -374 318 204 2 1196 410 79 16 0 chr4 80198050 80198113 -75432007 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 1196 481 122 57 13 chr4 80198153 80198311 -75431809 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 2 1196 346 321 0 0 chr4 80199159 80199243 -75430877 - Lx8 LINE L1 -158 7315 7232 2 1196 405 0 0 0 chr4 80199275 80199320 -75430800 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1196 423 119 0 0 chr4 80199322 80199389 -75430731 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1196 560 177 41 116 chr4 80199432 80199579 -75430541 - RLTR20C LTR ERVK 0 534 399 2 1196 6461 175 29 32 chr4 80199582 80200138 -75429982 + Lx LINE L1 4563 5103 -780 2 1196 1186 55 0 0 chr4 80200138 80200284 -75429836 + B1_Mus2 SINE Alu 2 147 0 2 1196 7118 132 23 18 chr4 80200284 80201826 -75428294 + Lx LINE L1 5104 6647 -7 2 1196 287 294 16 25 chr4 80201871 80201993 -75428127 - L1MA10 LINE L1 -4 6330 6210 2 1196 25 0 0 0 chr4 80202173 80202198 -75427922 + AT_rich Low_complexity Low_complexity 1 25 0 2 1196 497 374 12 32 chr4 80202275 80202521 -75427599 + Lx7 LINE L1 6892 7132 -564 2 1196 369 0 0 0 chr4 80202521 80202562 -75427558 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1196 288 305 144 68 chr4 80202562 80202610 -75427510 + Lx8 LINE L1 7171 7218 -255 2 1196 264 91 0 0 chr4 80202646 80202690 -75427430 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1196 216 0 0 0 chr4 80202732 80202756 -75427364 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2 1196 302 138 17 0 chr4 80202844 80202902 -75427218 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1196 253 336 95 19 chr4 80204434 80204698 -75425422 + L1M5 LINE L1 5532 5815 -364 2 1196 1802 252 45 4 chr4 80204796 80205209 -75424911 + Lx9 LINE L1 7085 7511 -133 2 1196 323 60 0 20 chr4 80205209 80205260 -75424860 + (CCA)n Simple_repeat Simple_repeat 1 50 0 2 1196 1802 252 45 4 chr4 80205260 80205383 -75424737 + Lx9 LINE L1 7512 7642 -2 2 1196 1156 104 55 0 chr4 80205629 80205830 -75424290 + Lx2 LINE L1 6785 6996 -1 2 1196 22 35 0 0 chr4 80206267 80206296 -75423824 + AT_rich Low_complexity Low_complexity 1 29 0 2 1196 282 29 0 0 chr4 80206599 80206634 -75423486 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1196 522 360 16 36 chr4 80206635 80206886 -75423234 - B4A SINE B4 -35 257 12 2 1196 775 249 60 0 chr4 80207017 80207218 -75422902 + B3 SINE B2 4 216 0 2 1196 21 0 0 0 chr4 80207950 80207971 -75422149 + AT_rich Low_complexity Low_complexity 1 21 0 2 1196 30 59 0 0 chr4 80208330 80208381 -75421739 + AT_rich Low_complexity Low_complexity 1 51 0 2 1196 4349 22 0 0 chr4 80208884 80209377 -75420743 - MT2_Mm LTR ERVL 0 493 1 2 1196 314 0 0 0 chr4 80209377 80209415 -75420705 - MERVL-int LTR ERVL 0 5485 5448 2 1196 392 167 46 35 chr4 80209415 80209502 -75420618 - ORR1A3-int LTR MaLR -1323 640 553 2 1196 47566 18 0 0 chr4 80209502 80214861 -75415259 - MERVL-int LTR ERVL -125 5360 1 2 1196 4369 20 0 0 chr4 80214861 80215354 -75414766 - MT2_Mm LTR ERVL 0 493 1 2 1197 285 197 0 0 chr4 80216292 80216358 -75413762 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1197 203 81 54 0 chr4 80216369 80216406 -75413714 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 2 1197 234 0 0 0 chr4 80216795 80216821 -75413299 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1197 250 363 134 43 chr4 80218367 80218554 -75411566 - MIRb SINE MIR -45 223 20 2 1197 30 0 0 0 chr4 80218908 80218938 -75411182 + AT_rich Low_complexity Low_complexity 1 30 0 2 1197 571 335 16 27 chr4 80218940 80219124 -75410996 + B4A SINE B4 2 183 -109 2 1197 480 62 0 0 chr4 80219193 80219257 -75410863 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1197 28 48 0 0 chr4 80220665 80220707 -75409413 + AT_rich Low_complexity Low_complexity 1 42 0 2 1197 186 43 0 0 chr4 80220789 80220812 -75409308 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 2 1197 2123 270 39 12 chr4 80220870 80221458 -75408662 + Lx7 LINE L1 6697 7300 -396 2 1197 269 179 11 67 chr4 80221490 80221580 -75408540 + T-rich Low_complexity Low_complexity 5 89 0 2 1197 384 40 0 0 chr4 80221580 80221630 -75408490 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1197 279 0 0 0 chr4 80221630 80221660 -75408460 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1197 33736 74 4 7 chr4 80222033 80227964 -75402156 - L1Md_F3 LINE L1 -294 6703 441 2 1197 469 185 22 0 chr4 80227970 80228062 -75402058 - MTC LTR MaLR -327 94 1 2 1197 397 250 116 8 chr4 80228078 80228199 -75401921 + ORR1D1 LTR MaLR 239 372 -2 2 1197 975 83 44 13 chr4 80228511 80228670 -75401450 - RLTR10 LTR ERVK 0 390 227 2 1197 279 167 0 0 chr4 80228714 80228774 -75401346 - RLTR10 LTR ERVK -72 318 259 3 1197 2515 35 3 6 chr4 80228797 80229116 -75401004 - RLTR10 LTR ERVK -72 318 1 3 1197 8452 16 0 0 chr4 80229118 80230113 -75400007 - RLTR10-int LTR ERVK -3 1984 990 3 1197 7741 34 9 0 chr4 80230191 80231155 -75398965 - RLTR10-int LTR ERVK -999 988 16 3 1197 965 89 44 13 chr4 80231190 80231349 -75398771 - RLTR10 LTR ERVK 0 390 227 3 1197 279 167 0 0 chr4 80231393 80231453 -75398667 - RLTR10 LTR ERVK -72 318 259 3 1197 2515 35 3 6 chr4 80231476 80231795 -75398325 - RLTR10 LTR ERVK -72 318 1 3 1197 5251 216 15 11 chr4 80231973 80233183 -75396937 - Lx2B LINE L1 -6 6994 5780 3 1197 21 36 0 0 chr4 80233575 80233603 -75396517 + AT_rich Low_complexity Low_complexity 1 28 0 3 1197 1366 335 73 27 chr4 80233893 80235187 -75394933 + Lx8 LINE L1 6101 7470 -3 3 1197 27 62 0 0 chr4 80235193 80235241 -75394879 + AT_rich Low_complexity Low_complexity 1 48 0 3 1197 1031 94 0 21 chr4 80236002 80236143 -75393977 - B1_Mus2 SINE Alu -9 138 1 3 1197 28 48 0 0 chr4 80236143 80236185 -75393935 + AT_rich Low_complexity Low_complexity 1 42 0 3 1197 242 321 62 0 chr4 80236731 80236812 -75393308 - ID SINE ID -136 88 3 3 1197 25 51 0 0 chr4 80237179 80237218 -75392902 + AT_rich Low_complexity Low_complexity 1 39 0 3 1197 405 0 0 0 chr4 80237288 80237333 -75392787 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1197 24 0 0 0 chr4 80237803 80237827 -75392293 + AT_rich Low_complexity Low_complexity 1 24 0 3 1197 269 307 19 19 chr4 80238509 80238612 -75391508 + (TATG)n Simple_repeat Simple_repeat 2 104 0 3 1197 29 47 0 0 chr4 80239460 80239503 -75390617 + AT_rich Low_complexity Low_complexity 1 43 0 3 1197 3098 279 91 13 chr4 80239504 80240554 -75389566 - Lx6 LINE L1 -188 7272 6141 3 1197 558 302 47 65 chr4 80240607 80240883 -75389237 + Lx8 LINE L1 6239 6509 -964 3 1197 777 324 63 52 chr4 80240922 80241381 -75388739 + Lx8 LINE L1 6865 7328 -145 3 1197 420 20 0 0 chr4 80241395 80241444 -75388676 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 3 1197 234 289 13 0 chr4 80241880 80241956 -75388164 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 1197 760 230 5 45 chr4 80242762 80242985 -75387135 + Lx8 LINE L1 3917 4130 -1750 3 1197 34858 31 4 7 chr4 80242982 80248136 -75381984 + L1Md_A LINE L1 457 5586 -297 3 1197 8282 37 0 6 chr4 80248137 80249138 -75380982 + L1Md_A LINE L1 5588 6582 0 3 1197 242 292 22 40 chr4 80249140 80249368 -75380752 + Lx8 LINE L1 4112 4335 -1545 3 1197 3192 184 28 14 chr4 80249369 80250004 -75380116 + Lx4A LINE L1 6415 7058 0 3 1197 7011 101 55 7 chr4 80250011 80251475 -75378645 - L1_Mus3 LINE L1 -364 6274 4740 3 1197 1763 141 41 6 chr4 80251466 80251767 -75378353 + L1_Mus3 LINE L1 6276 6579 -59 3 1197 3786 117 107 2 chr4 80251767 80252384 -75377736 + Lx3A LINE L1 6300 6981 0 3 1197 1763 141 41 6 chr4 80252384 80252424 -75377696 + L1_Mus3 LINE L1 6580 6629 -9 3 1197 198 0 0 0 chr4 80252425 80252447 -75377673 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1197 1028 257 40 22 chr4 80252455 80252901 -75377219 + Lx8 LINE L1 4328 4781 -1099 3 1197 663 199 78 30 chr4 80253012 80253178 -75376942 + ORR1C2 LTR MaLR 2 175 -192 3 1197 449 110 0 14 chr4 80253178 80253209 -75376911 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1197 1620 0 0 0 chr4 80253209 80253389 -75376731 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1197 449 110 0 14 chr4 80253389 80253431 -75376689 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1197 789 212 84 45 chr4 80253431 80253633 -75376487 + ORR1C2 LTR MaLR 174 383 -1 3 1197 770 279 35 22 chr4 80253636 80253951 -75376169 + Lx8 LINE L1 5113 5431 -449 3 1197 827 36 18 0 chr4 80253955 80254065 -75376055 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3 1197 889 148 0 17 chr4 80254066 80254238 -75375882 + GA-rich Low_complexity Low_complexity 1 169 0 3 1197 195 129 0 0 chr4 80254249 80254280 -75375840 + (CAAGA)n Simple_repeat Simple_repeat 2 32 0 3 1197 264 263 33 133 chr4 80254426 80254667 -75375453 + Lx8 LINE L1 5691 5907 -1566 3 1197 306 174 50 34 chr4 80254826 80254856 -75375264 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 3 1197 270 0 0 0 chr4 80254856 80254886 -75375234 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1197 225 0 0 0 chr4 80254886 80254910 -75375210 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1197 306 174 50 34 chr4 80254910 80254997 -75375123 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 3 1197 1484 198 47 19 chr4 80255230 80255642 -75374478 - Lx9 LINE L1 -1695 5949 5472 3 1197 998 329 51 20 chr4 80255716 80256166 -75373954 + Lx8 LINE L1 6559 7022 -451 3 1197 574 297 22 0 chr4 80256269 80256454 -75373666 + Lx8 LINE L1 7165 7353 -120 3 1197 805 276 64 76 chr4 80256776 80257105 -75373015 - RMER13A LTR ERVK -522 338 14 3 1197 333 0 0 0 chr4 80257355 80257392 -75372728 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3 1197 266 254 41 106 chr4 80257520 80257643 -75372477 + LTR41 LTR ERVL 90 204 -564 3 1197 761 251 29 14 chr4 80258959 80259169 -75370951 + B3 SINE B2 1 213 -3 3 1197 474 306 19 42 chr4 80259891 80260106 -75370014 - B3 SINE B2 -4 212 3 3 1197 539 289 185 0 chr4 80260330 80260503 -75369617 - B3 SINE B2 -10 206 2 3 1197 955 239 50 0 chr4 80260538 80260760 -75369360 + Lx5 LINE L1 6647 6879 -171 3 1197 603 0 0 0 chr4 80261539 80261606 -75368514 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1197 714 217 14 0 chr4 80261669 80261812 -75368308 + B1_Mur4 SINE Alu 2 146 -4 3 1197 381 43 0 0 chr4 80261812 80261859 -75368261 + (ATG)n Simple_repeat Simple_repeat 1 47 0 3 1197 343 380 27 5 chr4 80261871 80262059 -75368061 - L1MEf LINE L1 -5022 1178 987 3 1197 3859 161 25 0 chr4 80262067 80262755 -75367365 - Lx2 LINE L1 -455 6542 5838 3 1197 1353 229 61 43 chr4 80262749 80263191 -75366929 - L1VL4 LINE L1 -5591 711 262 3 1197 2690 300 102 28 chr4 80263192 80264245 -75365875 + Lx7 LINE L1 5734 6874 -822 3 1197 243 0 0 0 chr4 80264245 80264272 -75365848 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1197 2690 300 102 28 chr4 80264272 80264630 -75365490 + Lx7 LINE L1 6875 7249 -447 3 1197 1732 188 58 30 chr4 80264781 80265177 -75364943 + MTB_Mm LTR MaLR 1 407 0 3 1197 236 158 0 17 chr4 80265228 80265286 -75364834 + A-rich Low_complexity Low_complexity 3 59 0 3 1197 21 0 0 0 chr4 80266284 80266305 -75363815 + GC_rich Low_complexity Low_complexity 1 21 0 3 1197 4556 119 49 16 chr4 80266658 80268098 -75362022 + L1VL1 LINE L1 194 1675 -2023 3 1197 5265 143 64 4 chr4 80268096 80269395 -75360725 + L1_Mus4 LINE L1 5255 6632 -4 3 1197 3063 85 65 0 chr4 80269457 80269903 -75360217 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1197 2001 138 57 3 chr4 80270192 80270525 -75359595 - Lx2 LINE L1 -1 6996 6646 3 1197 3419 176 78 1 chr4 80270547 80271265 -75358855 - Lx2 LINE L1 -291 5586 4814 3 1197 249 62 0 0 chr4 80271270 80271302 -75358818 - Lx2 LINE L1 -1166 4711 4680 3 1197 6603 126 5 9 chr4 80271297 80272359 -75357761 + Lx LINE L1 5591 6647 -7 3 1197 26 30 0 0 chr4 80272494 80272527 -75357593 + AT_rich Low_complexity Low_complexity 1 33 0 3 1197 651 319 100 34 chr4 80272852 80273569 -75356551 - L1_Rod LINE L1 -61 5819 5055 3 1197 333 314 16 27 chr4 80273752 80274030 -75356090 - L1_Rod LINE L1 -3109 3031 2734 3 1197 23 0 0 0 chr4 80274121 80274144 -75355976 + AT_rich Low_complexity Low_complexity 1 23 0 3 1197 1169 271 67 6 chr4 80276475 80276806 -75353314 + MTEa LTR MaLR 2 352 -27 3 1197 851 299 31 69 chr4 80278436 80278727 -75351393 - MTE2a LTR MaLR -17 362 83 3 1197 1208 61 0 0 chr4 80278727 80278874 -75351246 + B1_Mm SINE Alu 1 147 0 3 1197 180 176 0 0 chr4 80278874 80278908 -75351212 + A-rich Low_complexity Low_complexity 1 34 0 3 1197 23 0 0 0 chr4 80279111 80279134 -75350986 + AT_rich Low_complexity Low_complexity 1 23 0 3 1197 4169 44 0 0 chr4 80279163 80279665 -75350455 - L1Md_T LINE L1 0 6582 6081 3 1197 1287 39 0 0 chr4 80279665 80279821 -75350299 + L1Md_A LINE L1 5925 6080 -502 3 1197 748 177 108 0 chr4 80279916 80280074 -75350046 + Lx3B LINE L1 6795 6969 -4 3 1197 24 0 0 0 chr4 80280849 80280873 -75349247 + AT_rich Low_complexity Low_complexity 1 24 0 3 1197 432 0 0 0 chr4 80281093 80281141 -75348979 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1197 279 0 0 0 chr4 80281141 80281171 -75348949 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1197 342 247 0 0 chr4 80281172 80281257 -75348863 - Lx9 LINE L1 -165 7479 7395 3 1197 477 110 0 0 chr4 80281268 80281341 -75348779 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1197 1106 54 0 45 chr4 80283232 80283376 -75346744 + B1_Mm SINE Alu 1 138 -9 3 1197 276 30 0 0 chr4 80283376 80283409 -75346711 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 3 1197 364 287 35 2 chr4 80284617 80284708 -75345412 + B1F SINE Alu 1 92 -57 3 1197 307 254 127 0 chr4 80284967 80285038 -75345082 - B1_Mur1 SINE Alu -8 141 62 3 1197 219 139 0 0 chr4 80285286 80285322 -75344798 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1197 253 335 405 20 chr4 80285846 80286038 -75344082 + LTR53 LTR ERVL 246 511 -8 3 1197 26 30 0 0 chr4 80287380 80287413 -75342707 + AT_rich Low_complexity Low_complexity 1 33 0 3 1197 257 0 0 29 chr4 80287584 80287618 -75342502 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 1197 21 0 0 0 chr4 80288063 80288084 -75342036 + AT_rich Low_complexity Low_complexity 1 21 0 3 1197 540 56 0 0 chr4 80288188 80288260 -75341860 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1197 396 0 0 0 chr4 80288260 80288303 -75341817 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1197 277 258 74 21 chr4 80288368 80288440 -75341680 + L1M2 LINE L1 4814 4892 -1251 3 1197 261 0 0 0 chr4 80288440 80288469 -75341651 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1197 277 258 74 21 chr4 80288469 80288491 -75341629 + L1M2 LINE L1 4893 4913 -1230 3 1197 295 314 57 11 chr4 80288542 80288719 -75341401 - L1M2 LINE L1 -764 5379 5195 3 1197 249 295 96 24 chr4 80288760 80288983 -75341137 + L1M2 LINE L1 5410 5653 -659 3 1197 291 288 38 46 chr4 80289943 80290074 -75340046 + RSINE1 SINE B4 3 132 -33 3 1197 648 302 0 6 chr4 80290765 80290923 -75339197 + RSINE1 SINE B4 4 161 -4 3 1197 426 120 0 0 chr4 80290923 80290998 -75339122 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1197 289 338 98 41 chr4 80291397 80291641 -75338479 - LTR55 LTR ERV -274 274 17 3 1197 245 270 81 81 chr4 80292579 80292740 -75337380 + RLTR14 LTR ERV1 220 380 -2 3 1197 1074 121 6 0 chr4 80293834 80293999 -75336121 + B2_Mm2 SINE B2 1 166 -29 3 1197 444 196 45 34 chr4 80294007 80294051 -75336069 + RMER17C LTR ERVK 95 140 -270 3 1197 312 27 0 0 chr4 80294051 80294088 -75336032 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1197 444 196 45 34 chr4 80294088 80294222 -75335898 + RMER17C LTR ERVK 141 274 -136 3 1197 261 83 0 0 chr4 80294222 80294258 -75335862 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1197 238 307 13 13 chr4 80294689 80294765 -75335355 + B1_Mur2 SINE Alu 64 139 -10 4 1197 1359 245 84 3 chr4 80294765 80295133 -75334987 + Lx7 LINE L1 6941 7338 -358 4 1197 8709 160 17 8 chr4 80295148 80296850 -75333270 - Lx4A LINE L1 0 7058 5347 4 1197 952 129 55 0 chr4 80296850 80297013 -75333107 - Lx2 LINE L1 -3 6994 6823 4 1197 3943 148 30 19 chr4 80297013 80297174 -75332946 - Lx4A LINE L1 -531 5346 5169 4 1197 585 0 0 0 chr4 80297181 80297246 -75332874 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 4 1197 323 85 0 41 chr4 80297246 80297287 -75332833 - HAL1-3A_ME LINE L1 -842 2016 1977 4 1197 334 204 21 0 chr4 80297288 80297381 -75332739 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 1197 1007 119 0 17 chr4 80297382 80297562 -75332558 - L1_Mur2 LINE L1 -3813 2064 1888 4 1197 9522 62 14 2 chr4 80297556 80299456 -75330664 - L1Md_F2 LINE L1 0 6582 4659 4 1197 229 65 32 0 chr4 80299451 80299482 -75330638 + L1Md_F LINE L1 723 754 -5765 4 1197 3490 148 52 3 chr4 80299480 80299559 -75330561 - L1_Mur2 LINE L1 -3973 1904 1827 4 1197 315 0 0 0 chr4 80299559 80299594 -75330526 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1197 3490 152 32 5 chr4 80299594 80300610 -75329510 - L1_Mur2 LINE L1 -4051 1826 778 4 1197 799 210 161 24 chr4 80300613 80300731 -75329389 + Lx7 LINE L1 7408 7530 -166 4 1197 261 0 0 0 chr4 80300731 80300760 -75329360 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1197 799 210 161 24 chr4 80300760 80300895 -75329225 + Lx7 LINE L1 7531 7695 -1 4 1197 260 339 28 0 chr4 80302086 80302195 -75327925 + MLT1J-int LTR MaLR 114 225 -1162 4 1197 2429 136 2 12 chr4 80302287 80302704 -75327416 - L1_Mm LINE L1 -2180 3703 3291 4 1197 4136 82 12 7 chr4 80302704 80303279 -75326841 + L1_Mus2 LINE L1 5988 6565 -1 4 1197 282 383 65 52 chr4 80304721 80305027 -75325093 + BLACKJACK DNA AcHobo 53 362 -2582 4 1197 228 328 128 46 chr4 80305141 80305336 -75324784 + BLACKJACK DNA AcHobo 515 725 -2219 4 1197 790 317 69 49 chr4 80305441 80305949 -75324171 + BLACKJACK DNA AcHobo 884 1401 -1543 4 1197 249 373 45 9 chr4 80305986 80306039 -75324081 + B4A SINE B4 31 87 -205 4 1197 327 295 34 11 chr4 80306039 80306128 -75323992 + PB1D10 SINE Alu 4 94 -23 4 1197 374 0 0 21 chr4 80306134 80306181 -75323939 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 4 1197 1064 312 72 41 chr4 80306477 80306992 -75323128 + MT2A LTR ERVL 1 531 -2 4 1197 508 239 261 7 chr4 80307123 80307305 -75322815 + B3 SINE B2 8 210 -6 4 1197 1151 258 22 41 chr4 80307538 80307853 -75322267 + Lx7 LINE L1 6227 6535 -1161 4 1197 972 306 6 39 chr4 80307853 80308189 -75321931 + Lx7 LINE L1 6675 6999 -697 4 1197 391 235 92 78 chr4 80308185 80308402 -75321718 - Lx9 LINE L1 -199 7445 7226 4 1197 728 180 0 7 chr4 80308399 80308539 -75321581 + Lx9 LINE L1 6911 7049 -595 4 1197 864 296 118 8 chr4 80308587 80308951 -75321169 - Lx6 LINE L1 -27 7433 7030 4 1197 367 306 107 9 chr4 80309250 80309362 -75320758 + Lx8 LINE L1 6272 6394 -1079 4 1197 4865 135 53 16 chr4 80309362 80310236 -75319884 + RMER17A2 LTR ERVK 1 906 0 4 1197 745 354 137 14 chr4 80310236 80310950 -75319170 + Lx8 LINE L1 6389 7190 -283 4 1197 25 0 0 0 chr4 80311266 80311291 -75318829 + AT_rich Low_complexity Low_complexity 1 25 0 4 1197 230 384 20 0 chr4 80311980 80312079 -75318041 + PB1D10 SINE Alu 1 101 -16 4 1197 275 259 23 23 chr4 80312130 80312217 -75317903 + L1_Mur3 LINE L1 587 673 -7039 4 1197 2930 52 13 0 chr4 80314417 80314798 -75315322 - L1_Mus1 LINE L1 0 6567 6182 4 1197 4457 60 13 2 chr4 80314802 80315436 -75314684 + L1_Mus1 LINE L1 5525 6165 -402 4 1197 8116 50 2 2 chr4 80315447 80316681 -75313439 - L1Md_F2 LINE L1 -5 6577 5344 4 1197 568 284 15 59 chr4 80316957 80317159 -75312961 + B3A SINE B2 3 195 -3 4 1197 459 87 0 0 chr4 80317254 80317323 -75312797 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1197 282 125 0 0 chr4 80317663 80317711 -75312409 + (CATA)n Simple_repeat Simple_repeat 2 49 0 4 1197 725 253 62 9 chr4 80317877 80318104 -75312016 - Lx6 LINE L1 -11 7449 7211 4 1197 294 337 72 62 chr4 80318192 80318385 -75311735 - MIR SINE MIR -55 207 13 4 1197 6116 115 21 23 chr4 80318519 80319477 -75310643 - Lx LINE L1 -6 6648 5693 4 1197 239 329 57 0 chr4 80319963 80320033 -75310087 + MTEa LTR MaLR 21 94 -285 4 1197 418 233 131 74 chr4 80320345 80320521 -75309599 - MLT1C LTR MaLR -281 186 1 4 1197 247 305 68 32 chr4 80321479 80321699 -75308421 - L1MC4a LINE L1 -7 7875 7648 4 1197 396 0 0 0 chr4 80322503 80322547 -75307573 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1197 865 270 88 0 chr4 80322742 80322968 -75307152 - Lx6 LINE L1 -472 6988 6743 4 1197 448 229 99 21 chr4 80322975 80323167 -75306953 - L1M3 LINE L1 -1589 4551 4345 4 1197 405 0 0 0 chr4 80324187 80324232 -75305888 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1197 267 31 0 0 chr4 80324232 80324263 -75305857 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1197 276 30 0 0 chr4 80324705 80324738 -75305382 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 4 1197 189 94 0 0 chr4 80325873 80325905 -75304215 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 4 1197 903 272 169 17 chr4 80326186 80326534 -75303586 - MTD LTR MaLR -14 405 5 4 1197 23 54 0 0 chr4 80326640 80326677 -75303443 + AT_rich Low_complexity Low_complexity 1 37 0 4 1197 239 338 0 14 chr4 80326726 80326795 -75303325 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 1197 344 191 40 60 chr4 80329683 80329783 -75300337 - B1_Mm SINE Alu 0 147 50 4 1197 3833 140 50 42 chr4 80329963 80331660 -75298460 + L1VL2 LINE L1 9 1505 -2110 4 1197 1783 166 8 47 chr4 80331647 80332101 -75298019 - L1VL1 LINE L1 -5857 867 217 4 1197 30 27 0 0 chr4 80332108 80332145 -75297975 + AT_rich Low_complexity Low_complexity 1 37 0 4 1197 249 83 0 0 chr4 80332571 80332607 -75297513 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1197 243 0 0 0 chr4 80332607 80332634 -75297486 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1197 5794 128 34 19 chr4 80332782 80333606 -75296514 + Lx LINE L1 5699 6518 -136 4 1197 219 69 0 0 chr4 80333606 80333635 -75296485 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 4 1197 5467 128 34 19 chr4 80333635 80333745 -75296375 + Lx LINE L1 6519 6647 -7 4 1197 4951 215 61 26 chr4 80333778 80335003 -75295117 + Lx5 LINE L1 5781 7048 -2 4 1197 297 0 0 0 chr4 80335071 80335104 -75295016 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 1197 227 286 157 28 chr4 80335106 80335214 -75294906 - B1_Mur3 SINE Alu -9 140 19 4 1197 412 181 0 0 chr4 80335341 80335413 -75294707 - tRNA-Asp-GAY tRNA tRNA -3 72 1 4 1197 249 346 78 68 chr4 80335811 80336003 -75294117 + MIR SINE MIR 4 197 -65 4 1197 2952 142 24 29 chr4 80338073 80338656 -75291464 - Lx2 LINE L1 -716 6281 5666 4 1197 4508 148 10 4 chr4 80338656 80339381 -75290739 + Lx2 LINE L1 6268 6996 -1 4 1197 708 235 20 0 chr4 80339381 80339401 -75290719 - Lx2 LINE L1 -182 5665 5644 4 1197 333 241 77 47 chr4 80339642 80339812 -75290308 - MER33 DNA MER1_type -6 318 144 4 1197 698 277 189 47 chr4 80339834 80339910 -75290210 - MTE2a LTR MaLR -16 363 276 4 1197 990 131 12 6 chr4 80339910 80340079 -75290041 - Lx2 LINE L1 -2 6995 6826 4 1197 698 277 189 47 chr4 80340079 80340320 -75289800 - MTE2a LTR MaLR -104 275 1 4 1197 3753 168 11 17 chr4 80340719 80341368 -75288752 + Lx4A LINE L1 6411 7055 -3 4 1197 743 191 0 6 chr4 80341377 80341540 -75288580 + GA-rich Low_complexity Low_complexity 3 164 0 4 1197 308 287 31 41 chr4 80341635 80341733 -75288387 + B3 SINE B2 1 97 -119 4 1197 207 0 0 0 chr4 80342009 80342032 -75288088 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1197 21 0 0 0 chr4 80342724 80342745 -75287375 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 233 353 45 45 chr4 80343975 80344064 -75286056 + ORR1E LTR MaLR 23 111 -248 4 1197 621 61 0 0 chr4 80344115 80344197 -75285923 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1197 8179 17 0 0 chr4 80344712 80345694 -75284426 + L1Md_T LINE L1 4605 5586 -297 4 1197 8409 36 0 0 chr4 80345694 80346690 -75283430 + L1Md_T LINE L1 5587 6582 0 4 1197 1425 172 169 20 chr4 80346730 80347085 -75283035 - Lx4B LINE L1 -944 6114 5707 4 149 1244 249 24 24 chr4 80347085 80347228 -75282892 - RLTR14 LTR ERV1 0 382 239 4 1198 396 0 0 0 chr4 80347228 80347272 -75282848 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1198 1244 249 24 24 chr4 80347272 80347510 -75282610 - RLTR14 LTR ERV1 -144 238 2 4 1198 393 292 103 25 chr4 80347646 80347888 -75282232 + Charlie4a DNA MER1_type 20 280 -228 4 1198 652 141 0 16 chr4 80347998 80348121 -75281999 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 1198 636 117 0 24 chr4 80348205 80348328 -75281792 - L1Md_F2 LINE L1 0 6582 6463 4 1198 24 53 0 0 chr4 80348347 80348385 -75281735 + AT_rich Low_complexity Low_complexity 1 38 0 4 1198 332 333 73 7 chr4 80349464 80349615 -75280505 + MIRb SINE MIR 2 162 -106 4 1198 250 350 21 0 chr4 80349772 80349869 -75280251 - MIR3 SINE MIR -19 189 91 4 1198 234 299 32 137 chr4 80350414 80350538 -75279582 + PB1D10 SINE Alu 1 111 -6 4 1198 234 0 0 0 chr4 80350612 80350638 -75279482 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1198 28766 82 75 4 chr4 80350691 80355839 -75274281 - L1Md_F2 LINE L1 -647 5935 401 4 1198 8214 158 47 100 chr4 80355845 80357937 -75272183 - L1_Mur1 LINE L1 -431 5446 3465 4 1198 2136 182 34 16 chr4 80357937 80358317 -75271803 - RMER13B LTR ERVK -521 387 1 4 1198 6047 173 59 25 chr4 80358317 80360121 -75269999 - L1_Mur1 LINE L1 -3342 2544 704 4 1198 1144 290 166 22 chr4 80360540 80361271 -75268849 - Lx9 LINE L1 -451 7193 6358 4 1198 22 35 0 0 chr4 80361355 80361384 -75268736 + AT_rich Low_complexity Low_complexity 1 29 0 4 1198 5758 141 57 16 chr4 80361384 80362414 -75267706 - Lx3C LINE L1 0 6976 5904 4 1198 798 110 0 0 chr4 80362429 80362556 -75267564 - L1_Mur1 LINE L1 -844 5042 4916 4 1198 10257 152 22 15 chr4 80362685 80365247 -75264873 - L1_Mur1 LINE L1 -2688 3198 651 4 1198 790 308 88 116 chr4 80365537 80366287 -75263833 - RMER13A LTR ERVK -111 749 21 4 1198 506 57 0 14 chr4 80367514 80367585 -75262535 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1198 604 273 3 3 chr4 80368492 80368634 -75261486 - B1_Mur1 SINE Alu -7 143 2 4 1198 193 319 56 0 chr4 80370187 80370259 -75259861 - L2a LINE L2 0 3426 3351 4 1198 548 286 132 8 chr4 80370363 80370620 -75259500 + Arthur1 DNA Tip100 3636 3924 -23 4 1198 315 0 0 0 chr4 80370821 80370856 -75259264 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1198 495 0 0 0 chr4 80370856 80370910 -75259210 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1198 777 345 32 25 chr4 80370934 80371219 -75258901 - B4A SINE B4 -4 288 2 5 1198 705 271 20 15 chr4 80371375 80371464 -75258656 + B3 SINE B2 9 97 -119 5 1198 372 111 0 0 chr4 80371464 80371527 -75258593 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1198 405 0 0 0 chr4 80371527 80371571 -75258549 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1198 705 271 20 15 chr4 80371571 80371682 -75258438 + B3 SINE B2 98 210 -6 5 1198 233 265 0 0 chr4 80371934 80371983 -75258137 + CT-rich Low_complexity Low_complexity 2 50 0 5 1198 184 309 82 31 chr4 80372570 80372667 -75257453 + MIR SINE MIR 147 248 -14 5 1198 1576 162 73 11 chr4 80372948 80373223 -75256897 - ORR1B2 LTR MaLR -75 292 1 5 1198 192 77 0 0 chr4 80373792 80373818 -75256302 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1198 1672 281 53 8 chr4 80375439 80375967 -75254153 + Lx6 LINE L1 6908 7459 -1 5 1198 718 271 14 10 chr4 80376687 80376896 -75253224 - B3 SINE B2 -6 210 1 5 1198 12789 68 14 1 chr4 80376923 80378698 -75251422 + L1Md_F2 LINE L1 3486 5284 -599 5 1198 6337 32 1 5 chr4 80378700 80379457 -75250663 + L1Md_F3 LINE L1 5829 6582 -2 5 1198 602 79 0 11 chr4 80379517 80379607 -75250513 + (GGGA)n Simple_repeat Simple_repeat 2 90 0 5 1198 539 180 13 13 chr4 80379655 80379807 -75250313 + GA-rich Low_complexity Low_complexity 2 153 0 5 1198 1822 119 14 14 chr4 80379807 80380088 -75250032 + ORR1A4 LTR MaLR 1 281 -48 5 1198 2261 48 3 0 chr4 80380088 80380378 -75249742 + L1Md_F2 LINE L1 5296 5586 -297 5 1198 8194 43 2 0 chr4 80380378 80381370 -75248750 + L1Md_F2 LINE L1 5587 6580 -2 5 1198 1039 222 74 31 chr4 80384477 80384761 -75245359 - ORR1D1 LTR MaLR 0 370 1 5 1198 270 0 0 0 chr4 80385123 80385153 -75244967 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1198 623 282 69 35 chr4 80385332 80385534 -75244586 + B3 SINE B2 1 209 -7 5 1198 591 355 4 39 chr4 80386722 80386980 -75243140 + MLT2D LTR ERVL 48 296 -118 5 1198 424 315 56 6 chr4 80387043 80387222 -75242898 + Lx8 LINE L1 7102 7289 -184 5 1198 1795 163 70 73 chr4 80387273 80387657 -75242463 - RLTR41 LTR ERV1 -2 444 62 5 1198 34 0 0 0 chr4 80387748 80387782 -75242338 + AT_rich Low_complexity Low_complexity 1 34 0 5 1198 705 114 0 0 chr4 80387804 80387918 -75242202 + (TG)n Simple_repeat Simple_repeat 2 115 0 5 1198 877 211 240 42 chr4 80388800 80388906 -75241214 + ORR1C2 LTR MaLR 1 137 -237 5 1198 639 0 0 0 chr4 80388906 80388977 -75241143 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1198 877 211 240 42 chr4 80388977 80389182 -75240938 + ORR1C2 LTR MaLR 138 373 -1 5 1198 2641 237 86 24 chr4 80389182 80390170 -75239950 + ORR1C2-int LTR MaLR 1 1315 -55 5 1198 1069 157 12 0 chr4 80390172 80390344 -75239776 + ORR1C2 LTR MaLR 211 384 0 5 1198 2329 35 31 0 chr4 80390461 80390751 -75239369 - L1_Mus1 LINE L1 0 6567 6269 5 1198 24 32 0 0 chr4 80391711 80391742 -75238378 + AT_rich Low_complexity Low_complexity 1 31 0 5 1198 2404 108 6 3 chr4 80391772 80392134 -75237986 - Lx LINE L1 -6 6648 6286 5 1198 305 254 0 14 chr4 80392638 80392710 -75237410 - Lx7 LINE L1 -993 6703 6633 5 1198 605 14 14 0 chr4 80392746 80392820 -75237300 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1198 1347 266 72 18 chr4 80392821 80393404 -75236716 + Lx6 LINE L1 6540 7436 -24 5 1198 579 40 0 0 chr4 80395175 80395249 -75234871 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1198 285 29 0 0 chr4 80395296 80395330 -75234790 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1198 681 66 0 0 chr4 80395581 80395672 -75234448 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 5 1198 261 118 0 0 chr4 80396824 80396875 -75233245 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1198 325 242 8 8 chr4 80397295 80397424 -75232696 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 1198 749 162 11 11 chr4 80398025 80398200 -75231920 + (CA)n Simple_repeat Simple_repeat 2 176 0 5 1198 4861 149 41 59 chr4 80398204 80399176 -75230944 + RMER17B LTR ERVK 1 955 -3 5 1198 742 181 6 11 chr4 80399191 80399370 -75230750 + (CATA)n Simple_repeat Simple_repeat 1 178 0 5 1198 922 185 39 11 chr4 80405912 80406092 -75224028 - MTD LTR MaLR -2 417 233 5 1198 2518 138 95 3 chr4 80406092 80406759 -75223361 + Lx4A LINE L1 5394 6127 -931 5 1198 6489 99 6 7 chr4 80406760 80408212 -75221908 + Lx3_Mus LINE L1 5134 6580 -429 5 1198 4104 146 58 33 chr4 80408212 80408935 -75221185 + Lx4A LINE L1 6317 7057 -1 5 1198 666 333 10 0 chr4 80408957 80409158 -75220962 - MTD LTR MaLR -170 249 47 5 1198 864 102 0 0 chr4 80409313 80409431 -75220689 + B2_Mm2 SINE B2 3 120 -75 5 1198 4506 189 88 17 chr4 80409927 80410853 -75219267 - RLTR25B LTR ERVK 0 1028 38 5 1198 496 290 61 49 chr4 80410968 80411089 -75219031 + B3A SINE B2 8 133 -65 5 1198 1306 162 9 0 chr4 80411089 80411311 -75218809 - URR1B DNA MER1_type 0 225 2 5 1198 496 272 93 98 chr4 80411311 80411393 -75218727 + B3A SINE B2 132 210 -6 5 1198 605 297 71 6 chr4 80412103 80412286 -75217834 - ID_B1 SINE B4 -26 198 4 5 1198 226 308 114 24 chr4 80412359 80412482 -75217638 - B1F SINE Alu -2 147 14 5 1198 1896 167 97 18 chr4 80412938 80413328 -75216792 + MTC LTR MaLR 1 421 0 5 1198 306 0 0 0 chr4 80415157 80415191 -75214929 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 5 1198 1271 281 55 43 chr4 80415424 80416136 -75213984 + RMER1B Other Other 9 596 -470 5 1198 243 288 12 36 chr4 80416461 80416544 -75213576 + ID4_ SINE ID 1 81 -2 5 1198 1196 247 154 3 chr4 80417418 80417763 -75212357 + MT2A LTR ERVL 1 397 -136 5 1198 409 286 137 46 chr4 80418206 80418519 -75211601 + RMER20B LTR ERVK 124 465 -51 5 1198 912 110 163 18 chr4 80420313 80420479 -75209641 - B2_Mm2 SINE B2 -5 190 1 5 1198 557 298 14 21 chr4 80421656 80421800 -75208320 + B3 SINE B2 2 144 -72 5 1198 1593 199 49 60 chr4 80421802 80422216 -75207904 + MT2B LTR ERVL 1 558 -43 5 1198 321 26 0 0 chr4 80422216 80422254 -75207866 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1198 615 62 0 0 chr4 80422254 80422334 -75207786 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1198 1593 185 34 59 chr4 80422334 80422379 -75207741 + MT2B LTR ERVL 559 600 -1 5 1198 259 288 0 0 chr4 80422384 80422443 -75207677 + B3 SINE B2 147 205 -11 5 1198 621 136 0 0 chr4 80422508 80422611 -75207509 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 5 1198 872 325 49 8 chr4 80423416 80423683 -75206437 + B4A SINE B4 1 278 -14 5 1198 226 232 36 0 chr4 80423703 80423759 -75206361 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1198 279 0 0 0 chr4 80423775 80423806 -75206314 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1198 1470 252 37 3 chr4 80423927 80424301 -75205819 + Lx8 LINE L1 6471 6857 -616 5 1198 1942 216 64 13 chr4 80424806 80425275 -75204845 + Lx5 LINE L1 6123 6615 -435 5 1198 1402 75 5 0 chr4 80425274 80425473 -75204647 - L1_Mus3 LINE L1 -223 6415 6216 5 1198 1413 94 14 5 chr4 80425473 80425686 -75204434 + L1_Mus3 LINE L1 6410 6624 -14 5 1198 1644 227 6 15 chr4 80425691 80426031 -75204089 + Lx5 LINE L1 6589 6925 -125 5 1198 850 202 111 5 chr4 80426031 80426220 -75203900 - MTD LTR MaLR -210 209 1 5 1198 328 259 18 123 chr4 80426628 80426905 -75203215 - Lx9 LINE L1 -16 7628 7381 5 1198 731 244 0 0 chr4 80426907 80427063 -75203057 + Lx9 LINE L1 6422 6577 -1067 5 1198 335 326 82 31 chr4 80427227 80427423 -75202697 + Lx7 LINE L1 2581 2786 -3360 5 1198 235 344 53 11 chr4 80427559 80427653 -75202467 + PB1D10 SINE Alu 12 109 -8 5 1198 229 294 0 23 chr4 80427656 80427743 -75202377 + GA-rich Low_complexity Low_complexity 4 88 0 5 1198 303 318 81 60 chr4 80427745 80427979 -75202141 + Lx7 LINE L1 3493 3731 -2415 5 1198 278 241 27 34 chr4 80428126 80428272 -75201848 + Lx7 LINE L1 4230 4374 -1772 5 1198 3526 191 25 185 chr4 80428728 80429357 -75200763 + Lx7 LINE L1 5356 5862 -1834 5 1198 491 90 0 13 chr4 80429357 80429436 -75200684 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 1198 3526 235 82 80 chr4 80429436 80429673 -75200447 + Lx7 LINE L1 5863 6153 -1543 5 1198 195 42 0 0 chr4 80429673 80429697 -75200423 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1198 3526 235 82 80 chr4 80429697 80430111 -75200009 + Lx7 LINE L1 6154 6522 -1174 5 1198 763 196 0 0 chr4 80430111 80430244 -75199876 + B1_Mus1 SINE Alu 1 133 -15 5 1198 3526 235 82 80 chr4 80430244 80430494 -75199626 + Lx7 LINE L1 6523 6772 -924 5 1198 395 38 19 0 chr4 80430494 80430547 -75199573 + (TAA)n Simple_repeat Simple_repeat 2 55 0 5 1198 3526 235 82 80 chr4 80430547 80430653 -75199467 + Lx7 LINE L1 6773 6877 -819 5 1198 4771 73 1 0 chr4 80430647 80431300 -75198820 - L1Md_F2 LINE L1 -341 5542 4889 5 1198 7711 61 1 10 chr4 80431300 80432292 -75197828 + L1Md_F2 LINE L1 5588 6570 -12 5 1198 1562 263 14 26 chr4 80432294 80432723 -75197397 + Lx6 LINE L1 6858 7281 -179 5 1198 262 304 39 0 chr4 80432802 80432904 -75197216 + Lx7 LINE L1 7203 7308 -388 5 1198 36 23 0 0 chr4 80433038 80433081 -75197039 + AT_rich Low_complexity Low_complexity 1 43 0 5 1198 344 257 9 27 chr4 80433090 80433202 -75196918 + L1_Rod LINE L1 5284 5393 -454 5 1198 180 156 0 0 chr4 80433667 80433699 -75196421 + L2 LINE L2 2798 2829 -590 5 1198 369 0 0 0 chr4 80435821 80435862 -75194258 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1198 698 292 65 115 chr4 80435880 80436152 -75193968 - MT2A LTR ERVL -115 418 145 5 1198 3897 94 41 2 chr4 80436152 80436717 -75193403 + L1_Mus3 LINE L1 6048 6634 -4 5 1198 698 292 65 115 chr4 80436717 80436878 -75193242 - MT2A LTR ERVL -389 144 7 5 1198 1143 51 0 0 chr4 80437169 80437307 -75192813 + B1_Mus2 SINE Alu 1 138 -9 5 1198 410 0 0 20 chr4 80437315 80437366 -75192754 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1198 1698 189 206 18 chr4 80437379 80437880 -75192240 + Lx9 LINE L1 6698 7292 -352 5 1198 2636 78 7 66 chr4 80437870 80438278 -75191842 - L1Md_F2 LINE L1 -199 5684 5302 5 1198 6970 58 5 9 chr4 80438278 80439172 -75190948 + L1Md_F2 LINE L1 5674 6563 -19 5 1198 183 42 0 0 chr4 80439172 80439196 -75190924 + (TAA)n Simple_repeat Simple_repeat 1 24 0 5 1198 2636 78 7 66 chr4 80439196 80439210 -75190910 - L1_Mm LINE L1 -582 5301 5287 5 1198 1044 227 82 6 chr4 80439224 80439552 -75190568 + Lx9 LINE L1 7285 7637 -7 5 1198 1726 155 98 11 chr4 80440740 80441099 -75189021 - ORR1B1 LTR MaLR -4 390 1 5 1198 295 125 28 0 chr4 80441465 80441537 -75188583 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 5 1198 800 229 42 0 chr4 80441623 80441789 -75188331 - B3 SINE B2 -43 173 1 5 1198 470 172 10 0 chr4 80442267 80442366 -75187754 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 1198 26 0 0 0 chr4 80444022 80444048 -75186072 + AT_rich Low_complexity Low_complexity 1 26 0 5 1198 485 99 0 40 chr4 80444105 80444179 -75185941 + B1_Mus1 SINE Alu 1 71 -77 5 1198 4826 80 24 1 chr4 80444181 80444505 -75185615 - MusHAL1 LINE L1 -778 1934 1610 5 1198 249 33 0 0 chr4 80444505 80444535 -75185585 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1198 4826 80 24 1 chr4 80444535 80444932 -75185188 - MusHAL1 LINE L1 -1103 1609 1198 5 1198 225 0 0 0 chr4 80445210 80445235 -75184885 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1198 506 57 14 0 chr4 80445692 80445762 -75184358 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 1198 188 322 95 63 chr4 80446221 80446443 -75183677 - L2a LINE L2 0 3426 3198 6 1198 1152 174 23 0 chr4 80446612 80446830 -75183290 - URR1B DNA MER1_type 0 225 3 6 1198 2240 89 27 6 chr4 80447126 80447454 -75182666 - IAPLTR1a_Mm LTR ERVK -2 335 1 6 1198 22102 26 7 2 chr4 80447456 80450138 -75179982 - IAPEz-int LTR ERVK -2 6479 3785 6 1198 10438 1 0 0 chr4 80450139 80452048 -75178072 - L1Md_A LINE L1 0 6582 4674 6 1198 29341 29 19 30 chr4 80452048 80455987 -75174133 - IAPEz-int LTR ERVK -2682 3799 6 6 1198 2232 87 28 6 chr4 80455987 80456312 -75173808 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 1198 1889 184 17 22 chr4 80456586 80456947 -75173173 + Lx4A LINE L1 6663 7021 -37 6 1198 216 111 0 0 chr4 80457425 80457461 -75172659 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1198 254 272 160 21 chr4 80457612 80457706 -75172414 + B4A SINE B4 6 112 -180 6 1198 1451 227 76 30 chr4 80458315 80458710 -75171410 + MTD LTR MaLR 5 417 -2 6 1198 33818 35 0 0 chr4 80458921 80464134 -75165986 + L1Md_T LINE L1 280 5589 -297 6 1198 9056 4 0 0 chr4 80464134 80465130 -75164990 + L1Md_T LINE L1 5590 6585 0 6 1198 671 78 35 0 chr4 80465275 80465391 -75164729 + (TC)n Simple_repeat Simple_repeat 1 120 0 6 1198 235 200 146 24 chr4 80466458 80466540 -75163580 - MER53 DNA hAT -70 123 32 6 1198 298 319 20 58 chr4 80466653 80466876 -75163244 - L1MB4 LINE L1 0 6183 5963 6 1198 566 312 37 48 chr4 80466944 80467213 -75162907 + Lx8 LINE L1 7000 7265 -208 6 1198 1118 187 30 0 chr4 80467233 80467463 -75162657 + Lx6 LINE L1 6552 6788 -672 6 1198 2465 83 9 0 chr4 80467463 80467800 -75162320 + MTB LTR MaLR 61 400 0 6 1198 778 205 5 81 chr4 80467800 80467986 -75162134 + Lx6 LINE L1 6812 6983 -477 6 1198 414 292 30 8 chr4 80468044 80468175 -75161945 - Tigger7 DNA MER2_type -17 2474 2341 6 1198 479 250 86 12 chr4 80468187 80468349 -75161771 + Lx6 LINE L1 6019 6192 -1268 6 1198 247 263 10 10 chr4 80468365 80468461 -75161659 - L1M3 LINE L1 -741 5442 5347 6 1198 438 345 37 64 chr4 80468683 80468980 -75161140 - B4A SINE B4 -3 289 1 6 1198 243 239 14 56 chr4 80469166 80469237 -75160883 + RMER15 LTR ERVL 351 418 -157 6 1198 268 169 28 14 chr4 80469254 80469326 -75160794 + GA-rich Low_complexity Low_complexity 4 76 0 6 1198 7943 34 0 0 chr4 80470412 80471461 -75158659 - L1Md_T LINE L1 -2 6580 5532 6 1198 1782 28 5 5 chr4 80471952 80472171 -75157949 - MTB LTR MaLR 0 400 182 6 1198 2937 91 88 17 chr4 80472174 80472642 -75157478 + MTB-int LTR MaLR 598 1098 0 6 1198 3119 78 2 0 chr4 80472644 80473041 -75157079 + MTB LTR MaLR 3 400 0 6 1198 353 368 61 12 chr4 80473375 80473540 -75156580 + B3A SINE B2 1 173 -25 6 1198 180 77 0 0 chr4 80473546 80473572 -75156548 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1198 29 0 0 0 chr4 80473581 80473610 -75156510 + AT_rich Low_complexity Low_complexity 1 29 0 6 1198 455 119 13 26 chr4 80473616 80473695 -75156425 - B1_Mus2 SINE Alu 0 150 71 6 1198 432 0 0 0 chr4 80473695 80473743 -75156377 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 6 1198 357 24 0 0 chr4 80473803 80473845 -75156275 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1198 2500 128 10 5 chr4 80475043 80475443 -75154677 + Lx LINE L1 6250 6651 -3 6 1198 3044 237 66 25 chr4 80475479 80476443 -75153677 - RMER1A Other Other -3 1063 1 6 1198 325 311 43 58 chr4 80476455 80476643 -75153477 - Tigger7 DNA MER2_type -2013 478 294 6 1198 7265 138 89 4 chr4 80476786 80478072 -75152048 - Lx4A LINE L1 -3 7055 5661 6 149 189 265 40 20 chr4 80478161 80478211 -75151909 - MIRc SINE MIR -178 90 40 6 1199 279 0 0 0 chr4 80478284 80478315 -75151805 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 1199 594 311 43 0 chr4 80478632 80478860 -75151260 - Tigger7 DNA MER2_type -451 254 7 6 1199 486 340 74 30 chr4 80478918 80479188 -75150932 + L1M5 LINE L1 5536 5817 -345 6 1199 432 278 67 17 chr4 80480488 80480667 -75149453 - B3A SINE B2 -9 189 2 6 1199 1117 64 0 7 chr4 80481558 80481700 -75148420 + B1_Mus1 SINE Alu 1 141 -7 6 1199 22 0 0 0 chr4 80481700 80481722 -75148398 + AT_rich Low_complexity Low_complexity 1 22 0 6 1199 609 276 100 27 chr4 80481728 80481948 -75148172 + B4A SINE B4 43 278 -14 6 1199 333 325 48 32 chr4 80482511 80482524 -75147596 + B4 SINE B4 79 93 -199 6 1199 865 186 0 0 chr4 80482524 80482669 -75147451 + B1_Mus2 SINE Alu 3 147 0 6 1199 270 143 0 0 chr4 80484161 80484210 -75145910 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1199 369 0 0 0 chr4 80484375 80484416 -75145704 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 6 1199 345 311 0 0 chr4 80484541 80484615 -75145505 + BC1_Mm scRNA scRNA 1 74 -78 6 1199 459 0 0 0 chr4 80484617 80484668 -75145452 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 1199 787 171 57 0 chr4 80484674 80484814 -75145306 - B1_Mus1 SINE Alu 0 148 1 6 1199 357 174 0 0 chr4 80484935 80485004 -75145116 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1199 522 0 0 0 chr4 80487793 80487851 -75142269 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1199 438 20 0 0 chr4 80487851 80487901 -75142219 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1199 406 350 0 49 chr4 80487943 80488126 -75141994 - B4 SINE B4 -6 286 113 6 1199 374 270 74 67 chr4 80488006 80488141 -75141979 - B1_Mur1 SINE Alu -1 148 13 6 1199 346 291 38 0 chr4 80488559 80488638 -75141482 + RSINE1 SINE B4 3 84 -81 6 1199 216 323 41 10 chr4 80488638 80488656 -75141464 + B2_Mm2 SINE B2 2 101 -94 6 1199 369 0 0 0 chr4 80488660 80488701 -75141419 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1199 262 270 11 11 chr4 80490064 80490154 -75139966 + CT-rich Low_complexity Low_complexity 1 90 0 6 1199 468 0 0 0 chr4 80490317 80490369 -75139751 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1199 363 136 0 0 chr4 80491431 80491490 -75138630 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1199 241 364 51 60 chr4 80493468 80493585 -75136535 + PB1D10 SINE Alu 2 117 0 6 1199 992 72 0 0 chr4 80495080 80495218 -75134902 - L1Md_F2 LINE L1 -12 6570 6433 6 1199 250 328 61 68 chr4 80495933 80496080 -75134040 - MIRb SINE MIR -6 262 117 6 1199 219 367 67 13 chr4 80496232 80496381 -75133739 + MIRm SINE MIR 6 162 -114 6 1199 25 0 0 0 chr4 80496536 80496561 -75133559 + AT_rich Low_complexity Low_complexity 1 25 0 6 1199 189 74 0 0 chr4 80497656 80497683 -75132437 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1199 1068 117 0 11 chr4 80497683 80497864 -75132256 - Lx3A LINE L1 -11 6970 6792 6 1199 409 287 0 0 chr4 80497871 80497972 -75132148 + B1F2 SINE Alu 40 140 -9 6 1199 647 36 0 0 chr4 80497974 80498058 -75132062 + Lx3A LINE L1 6086 6169 -812 6 1199 379 96 0 0 chr4 80498058 80498110 -75132010 - RMER6D LTR ERVK -668 52 1 6 1199 218 395 41 26 chr4 80498279 80498474 -75131646 - L2c LINE L2 -246 3141 2944 6 1199 26 0 0 0 chr4 80499532 80499558 -75130562 + AT_rich Low_complexity Low_complexity 1 26 0 6 1199 26 50 0 0 chr4 80499586 80499626 -75130494 + AT_rich Low_complexity Low_complexity 1 40 0 6 1199 449 277 115 14 chr4 80500070 80500209 -75129911 + MER20 DNA MER1_type 4 156 -63 1 1199 399 89 0 0 chr4 80500326 80500382 -75129738 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1199 791 314 94 20 chr4 80500445 80500890 -75129230 - L1MA9 LINE L1 -168 6144 5667 3 1199 328 266 113 6 chr4 80500922 80501095 -75129025 - L1MA9 LINE L1 -785 5527 5329 3 1199 344 217 150 0 chr4 80501120 80501240 -75128880 - L1MA9 LINE L1 -852 5288 5151 3 1199 508 293 13 20 chr4 80501284 80501434 -75128686 - RSINE1 SINE B4 -13 152 4 4 1199 769 258 46 109 chr4 80501439 80501787 -75128333 - RLTR26 LTR ERVK -5 637 312 5 1199 558 208 53 8 chr4 80501776 80501907 -75128213 - RMER13B LTR ERVK -766 142 6 6 1199 24 32 0 0 chr4 80501929 80501960 -75128160 + AT_rich Low_complexity Low_complexity 1 31 0 7 1199 459 0 0 0 chr4 80502033 80502084 -75128036 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1199 290 273 218 30 chr4 80502098 80502396 -75127724 - L1MA9 LINE L1 -1909 4231 3878 3 1199 484 276 1 52 chr4 80502397 80502527 -75127593 - B1_Mur1 SINE Alu -24 125 1 9 1199 627 282 51 0 chr4 80502879 80503074 -75127046 - Lx8 LINE L1 -365 7108 6904 1 1199 578 258 93 57 chr4 80503174 80503561 -75126559 - BGLII_B LTR ERVK -40 401 1 1 1199 632 239 32 13 chr4 80503566 80503723 -75126397 - Lx8 LINE L1 -571 6902 6743 1 1199 500 301 4 39 chr4 80503736 80503928 -75126192 + Lx9 LINE L1 5790 5975 -1669 1 1199 1164 184 91 86 chr4 80503911 80504262 -75125858 + Lx2B LINE L1 6587 6939 -61 1 1199 272 254 0 0 chr4 80504313 80504368 -75125752 - B3 SINE B2 -85 131 77 1 1199 308 320 125 23 chr4 80504387 80504563 -75125557 - L1MA9 LINE L1 -2531 3612 3419 3 1199 28 29 0 0 chr4 80504658 80504693 -75125427 + AT_rich Low_complexity Low_complexity 1 35 0 1 1199 31 0 0 0 chr4 80504973 80505004 -75125116 + AT_rich Low_complexity Low_complexity 1 31 0 1 1199 302 315 189 15 chr4 80505004 80505136 -75124984 + B4A SINE B4 26 180 -112 1 1199 497 316 90 50 chr4 80505184 80505231 -75124889 - MTD LTR MaLR -122 297 246 1 1199 522 46 0 0 chr4 80505231 80505296 -75124824 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1199 497 316 90 50 chr4 80505296 80505525 -75124595 - MTD LTR MaLR -174 245 10 1 1199 441 84 0 0 chr4 80505527 80505598 -75124522 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 1199 1083 75 0 0 chr4 80505598 80505744 -75124376 + (GAA)n Simple_repeat Simple_repeat 3 148 0 2 1199 596 234 102 0 chr4 80505950 80506078 -75124042 + B1_Mur2 SINE Alu 3 143 -6 2 1199 240 143 0 0 chr4 80506476 80506518 -75123602 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1199 487 304 58 6 chr4 80506763 80506935 -75123185 + B3A SINE B2 2 182 -16 2 1199 844 281 49 0 chr4 80507002 80507205 -75122915 + B3 SINE B2 4 216 0 2 1199 455 241 0 10 chr4 80508358 80508478 -75121642 + PB1D9 SINE Alu 1 119 -1 2 1199 401 0 20 0 chr4 80509629 80509678 -75120442 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1199 387 255 89 30 chr4 80509948 80510049 -75120071 - B1_Mur2 SINE Alu -31 118 12 2 1199 501 17 0 0 chr4 80510280 80510338 -75119782 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1199 547 176 20 20 chr4 80511132 80511283 -75118837 + (TATATG)n Simple_repeat Simple_repeat 2 152 0 3 1199 1322 74 0 0 chr4 80511375 80511537 -75118583 - L1_Mus1 LINE L1 0 6567 6406 3 1199 2274 82 0 0 chr4 80511537 80511830 -75118290 + L1_Mus1 LINE L1 6046 6338 -229 3 1199 514 208 31 70 chr4 80513008 80513137 -75116983 + B1_Mur1 SINE Alu 26 149 0 3 1199 679 313 101 63 chr4 80513219 80513755 -75116365 + MT2B LTR ERVL 1 556 -45 3 1199 631 342 56 53 chr4 80513767 80514178 -75115942 - MLT1D LTR MaLR -93 412 1 3 1199 754 283 34 119 chr4 80514555 80514631 -75115489 + L1MA5 LINE L1 4534 4602 -1541 3 1199 550 269 7 78 chr4 80514631 80514772 -75115348 + B1_Mur2 SINE Alu 2 132 -17 3 1199 754 283 34 119 chr4 80514772 80515172 -75114948 + L1MA5 LINE L1 4603 4969 -1174 3 1199 2312 174 7 21 chr4 80515172 80515598 -75114522 - MTC LTR MaLR -9 412 1 3 1199 449 299 154 70 chr4 80515598 80515968 -75114152 + L1MA5 LINE L1 4965 5365 -778 3 1199 408 212 26 26 chr4 80515968 80516084 -75114036 + L1MA5 LINE L1 5512 5627 -670 3 1199 224 157 20 0 chr4 80516090 80516141 -75113979 + T-rich Low_complexity Low_complexity 3 54 0 3 1199 280 200 0 0 chr4 80516215 80516265 -75113855 - B3A SINE B2 -148 50 1 3 1199 858 242 35 20 chr4 80516275 80516477 -75113643 - B3 SINE B2 -5 211 7 4 1199 339 167 0 0 chr4 80516534 80516600 -75113520 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1199 795 283 53 7 chr4 80516604 80516889 -75113231 + L1MA5 LINE L1 5648 5945 -355 3 1199 620 308 38 16 chr4 80516917 80517102 -75113018 + B3 SINE B2 1 189 -27 4 1199 489 110 0 0 chr4 80517102 80517175 -75112945 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 4 1199 640 337 113 33 chr4 80517544 80517637 -75112483 - MER44B DNA MER2_type -2 548 452 4 1199 252 0 0 0 chr4 80517637 80517665 -75112455 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1199 640 338 113 30 chr4 80517665 80518055 -75112065 - MER44B DNA MER2_type -99 451 17 4 1199 690 133 0 0 chr4 80518501 80518614 -75111506 + (CTG)n Simple_repeat Simple_repeat 1 113 0 4 1199 189 94 0 0 chr4 80518674 80518706 -75111414 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 4 1199 354 61 0 0 chr4 80520101 80520150 -75109970 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1199 623 259 41 27 chr4 80520751 80520898 -75109222 - B1F SINE Alu 0 149 1 4 1199 259 256 198 23 chr4 80521918 80522090 -75108030 + L1M2 LINE L1 5000 5201 -942 5 1199 317 239 51 8 chr4 80522138 80522251 -75107869 - L1M3 LINE L1 -2302 3841 3723 5 1199 571 235 8 41 chr4 80522315 80522457 -75107663 + B1_Mur1 SINE Alu 1 138 -11 5 1199 243 270 19 65 chr4 80522459 80522566 -75107554 + L1M2 LINE L1 5379 5480 -820 5 1199 331 230 39 20 chr4 80522575 80522677 -75107443 + L1MA5 LINE L1 6195 6298 -2 5 1199 227 169 62 123 chr4 80523711 80523792 -75106328 - PB1D10 SINE Alu -9 108 33 5 1199 489 34 0 0 chr4 80523834 80523893 -75106227 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 5 1199 281 330 54 21 chr4 80524440 80524533 -75105587 - PB1D7 SINE Alu -1 119 24 5 1199 1383 62 68 0 chr4 80524557 80524733 -75105387 - B2_Mm2 SINE B2 -6 189 2 5 1199 848 55 0 0 chr4 80524965 80525074 -75105046 + B1_Mus1 SINE Alu 39 147 -1 5 1199 821 153 11 11 chr4 80525250 80525428 -75104692 + CT-rich Low_complexity Low_complexity 3 180 0 5 1199 251 114 0 22 chr4 80525428 80525473 -75104647 + (TCTCCC)n Simple_repeat Simple_repeat 5 48 0 6 1199 1197 73 0 0 chr4 80526007 80526228 -75103892 + (TC)n Simple_repeat Simple_repeat 1 221 0 6 1199 270 250 210 59 chr4 80527153 80527272 -75102848 - B3A SINE B2 0 198 62 6 1199 919 259 35 5 chr4 80527413 80527615 -75102505 - B3 SINE B2 -7 209 2 6 1199 35 41 0 0 chr4 80528481 80528530 -75101590 + AT_rich Low_complexity Low_complexity 1 49 0 6 1199 2097 100 3 70 chr4 80528608 80528964 -75101156 + IAPLTR1a_Mm LTR ERVK 1 332 -5 6 1199 387 218 12 69 chr4 80528951 80529074 -75101046 - B2_Mm2 SINE B2 -85 131 14 6 1199 589 311 126 13 chr4 80529074 80529383 -75100737 - Lx8 LINE L1 -12 7461 7118 6 1199 1493 90 16 0 chr4 80529599 80529788 -75100332 - B2_Mm2 SINE B2 -1 194 3 6 1199 2431 152 62 24 chr4 80530065 80530564 -75099556 - Lx4B LINE L1 -40 7018 6523 6 1199 541 296 84 19 chr4 80531939 80532262 -75097858 - L1ME2z LINE L1 -139 6305 5962 7 1199 401 324 20 48 chr4 80533319 80533465 -75096655 - RSINE1 SINE B4 -19 146 5 7 1199 26 72 0 35 chr4 80534069 80534156 -75095964 + AT_rich Low_complexity Low_complexity 1 84 0 7 1199 198 0 0 0 chr4 80534161 80534183 -75095937 + (TC)n Simple_repeat Simple_repeat 1 22 0 7 1199 420 67 0 0 chr4 80534183 80534242 -75095878 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1199 267 343 20 20 chr4 80534314 80534415 -75095705 - Lx8 LINE L1 -137 7336 7236 7 1199 757 225 0 0 chr4 80534415 80534544 -75095576 - B1_Mur3 SINE Alu -20 129 1 7 1199 250 325 33 90 chr4 80534545 80534768 -75095352 - L1MC LINE L1 -3557 2589 2381 7 1199 1196 136 11 0 chr4 80535076 80535252 -75094868 + B2_Mm1t SINE B2 3 180 -13 7 1199 322 141 316 18 chr4 80535298 80535412 -75094708 + B2_Mm2 SINE B2 47 194 -1 7 1199 359 160 13 0 chr4 80535877 80535952 -75094168 + A-rich Low_complexity Low_complexity 3 78 0 8 1199 341 250 0 0 chr4 80536167 80536239 -75093881 - RSINE1 SINE B4 -68 97 26 8 1199 671 179 102 22 chr4 80536389 80536526 -75093594 - B1_Mur2 SINE Alu -1 148 1 8 1199 983 239 150 38 chr4 80536641 80537133 -75092987 + RMER20B LTR ERVK 10 556 -71 8 1199 1134 82 0 0 chr4 80537387 80537522 -75092598 + B1_Mus1 SINE Alu 2 136 -12 8 1199 477 90 0 0 chr4 80537522 80537589 -75092531 + (TAA)n Simple_repeat Simple_repeat 2 68 0 8 1199 2051 102 49 0 chr4 80537940 80538244 -75091876 + ORR1A2 LTR MaLR 1 319 -8 8 1199 451 280 61 27 chr4 80538438 80538585 -75091535 - ID_B1 SINE B4 0 224 73 8 1199 535 139 17 0 chr4 80541123 80541238 -75088882 + GA-rich Low_complexity Low_complexity 2 118 0 8 1199 1326 256 63 8 chr4 80541454 80541817 -75088303 + Lx6 LINE L1 7068 7450 -10 8 1199 345 186 0 0 chr4 80541968 80542038 -75088082 + CT-rich Low_complexity Low_complexity 3 72 0 9 1199 315 0 0 0 chr4 80542649 80542684 -75087436 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1199 347 172 16 0 chr4 80542992 80543056 -75087064 - B1_Mur4 SINE Alu -66 84 20 9 1199 333 47 0 0 chr4 80543059 80543102 -75087018 + (CCA)n Simple_repeat Simple_repeat 2 44 0 9 1199 181 257 0 0 chr4 80543258 80543293 -75086827 + L2c LINE L2 3277 3311 -76 9 1199 231 36 0 0 chr4 80543295 80543323 -75086797 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1199 248 264 0 40 chr4 80543386 80543461 -75086659 + GA-rich Low_complexity Low_complexity 4 75 0 9 1199 660 310 21 21 chr4 80544657 80544845 -75085275 - B3A SINE B2 -9 189 2 9 1199 528 202 0 0 chr4 80544919 80545013 -75085107 - B1_Mur2 SINE Alu -17 132 39 9 1199 890 210 48 105 chr4 80545403 80545632 -75084488 - B3 SINE B2 0 216 1 9 1199 249 159 0 0 chr4 80545804 80545848 -75084272 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 1 1199 526 171 26 0 chr4 80545892 80546009 -75084111 + GA-rich Low_complexity Low_complexity 3 122 0 1 1199 243 152 44 29 chr4 80546381 80546449 -75083671 + T-rich Low_complexity Low_complexity 1 69 0 1 1199 4169 210 52 92 chr4 80546598 80547835 -75082285 + Lx7 LINE L1 6509 7696 0 1 1199 692 224 15 7 chr4 80549035 80549170 -75080950 + B1_Mur1 SINE Alu 1 136 -13 1 1199 210 279 32 32 chr4 80549239 80549302 -75080818 + ID4_ SINE ID 11 73 -10 1 1199 282 333 65 59 chr4 80549921 80550024 -75080096 + MLT1B LTR MaLR 62 160 -307 1 1199 3700 15 5 0 chr4 80550024 80550418 -75079702 - MTA_Mm LTR MaLR 0 396 1 1 1199 9840 19 20 0 chr4 80550418 80551494 -75078626 - MTA_Mm-int LTR MaLR 0 1098 1 1 1199 3674 20 5 0 chr4 80551494 80551888 -75078232 - MTA_Mm LTR MaLR 0 396 1 1 1199 282 295 124 62 chr4 80551888 80552104 -75078016 + MLT1B LTR MaLR 154 386 -4 1 1199 627 261 50 27 chr4 80552218 80552439 -75077681 + MER63D DNA AcHobo 1 226 -835 1 1199 324 35 70 0 chr4 80553042 80553099 -75077021 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 1 1199 719 199 14 7 chr4 80554646 80554793 -75075327 - B1_Mur4 SINE Alu -1 149 2 1 1199 828 88 0 312 chr4 80555902 80556117 -75074003 - B1_Mus1 SINE Alu 0 148 1 1 1199 183 100 0 0 chr4 80557399 80557429 -75072691 + (CAG)n Simple_repeat Simple_repeat 2 31 0 1 1199 224 301 31 31 chr4 80558286 80558382 -75071738 + MIR3 SINE MIR 72 167 -41 1 1199 472 121 239 8 chr4 80559002 80559119 -75071001 + URR1A DNA MER1_type 81 224 -2 1 1199 529 268 69 23 chr4 80559123 80559253 -75070867 + RSINE1 SINE B4 18 153 -12 1 1199 891 275 5 0 chr4 80559551 80559762 -75070358 - B3 SINE B2 -1 215 4 1 1199 304 268 76 97 chr4 80560055 80560207 -75069913 - B4A SINE B4 -148 144 2 1 1199 479 200 15 20 chr4 80560597 80560728 -75069392 + PB1D9 SINE Alu 22 150 0 1 1199 324 0 0 0 chr4 80560728 80560764 -75069356 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1199 239 323 64 18 chr4 80560941 80561054 -75069066 - MIRc SINE MIR -144 118 6 1 1199 333 0 0 0 chr4 80561217 80561254 -75068866 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1199 409 354 18 24 chr4 80561321 80561442 -75068678 + RSINE1 SINE B4 2 124 -41 1 1199 279 0 0 0 chr4 80561442 80561473 -75068647 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1199 409 354 18 24 chr4 80561473 80561516 -75068604 + RSINE1 SINE B4 125 164 -1 1 1199 425 185 728 16 chr4 80562242 80562367 -75067753 + B3A SINE B2 3 216 0 1 1199 839 122 112 12 chr4 80562978 80563162 -75066958 - Lx2 LINE L1 -3 6997 6775 1 1199 1737 100 0 0 chr4 80563161 80563412 -75066708 - Lx2 LINE L1 -352 6645 6395 1 1199 303 282 106 0 chr4 80563551 80563636 -75066484 - RSINE1 SINE B4 -29 136 43 1 1199 733 89 8 8 chr4 80563661 80563786 -75066334 + (TTCC)n Simple_repeat Simple_repeat 2 126 0 1 1199 420 276 38 0 chr4 80563801 80563906 -75066214 - PB1D9 SINE Alu -7 113 5 1 1199 439 241 89 0 chr4 80564206 80564318 -75065802 - B3 SINE B2 -94 122 1 1 1199 300 233 0 118 chr4 80564502 80564604 -75065516 + B4A SINE B4 106 195 -97 1 1199 342 0 0 0 chr4 80566460 80566498 -75063622 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1199 424 141 0 14 chr4 80566762 80566834 -75063286 + URR1A DNA MER1_type 52 122 -104 1 1199 225 180 0 0 chr4 80567170 80567220 -75062900 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1199 22 0 0 0 chr4 80568865 80568887 -75061233 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 21 0 0 0 chr4 80569934 80569955 -75060165 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 879 186 74 11 chr4 80570193 80570383 -75059737 - B3 SINE B2 -6 210 9 1 1199 24 0 0 0 chr4 80572112 80572136 -75057984 + AT_rich Low_complexity Low_complexity 1 24 0 1 1199 261 280 13 13 chr4 80572934 80573010 -75057110 + CT-rich Low_complexity Low_complexity 4 79 0 1 1199 536 181 39 16 chr4 80573011 80573140 -75056980 - B1_Mur1 SINE Alu -1 148 17 1 1199 226 83 111 0 chr4 80573292 80573328 -75056792 + B1_Mur1 SINE Alu 74 113 -36 1 1199 180 179 0 0 chr4 80573332 80573371 -75056749 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1199 23 0 0 0 chr4 80573534 80573557 -75056563 + AT_rich Low_complexity Low_complexity 1 23 0 1 1199 3108 34 2 85 chr4 80573588 80574011 -75056109 - RLTR10 LTR ERVK -2 388 1 1 1199 8302 19 5 0 chr4 80574013 80575003 -75055117 - RLTR10-int LTR ERVK -3 1984 990 1 1199 7390 44 8 1 chr4 80575082 80576021 -75054099 - RLTR10-int LTR ERVK -999 988 44 1 1199 918 101 7 0 chr4 80576021 80576037 -75054083 - B1_Mus2 SINE Alu -8 139 123 1 1199 3070 34 2 89 chr4 80576037 80576462 -75053658 - RLTR10 LTR ERVK -2 388 1 1 1199 918 101 7 0 chr4 80576462 80576583 -75053537 - B1_Mus2 SINE Alu -25 122 2 1 1199 1226 78 36 6 chr4 80576586 80576753 -75053367 - B2_Mm2 SINE B2 -23 172 1 1 1199 228 35 0 0 chr4 80576891 80576920 -75053200 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1199 1089 45 30 0 chr4 80576920 80577052 -75053068 - B1_Mus1 SINE Alu -11 137 2 1 1199 204 40 0 0 chr4 80577352 80577377 -75052743 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1 1199 234 0 0 0 chr4 80578020 80578046 -75052074 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1199 292 245 19 12 chr4 80578265 80578426 -75051694 + GA-rich Low_complexity Low_complexity 2 163 0 1 1199 248 297 29 38 chr4 80578584 80578689 -75051431 - PB1D10 SINE Alu -12 105 2 1 1199 220 253 0 52 chr4 80579402 80579498 -75050622 + (CCA)n Simple_repeat Simple_repeat 2 92 0 1 1199 283 94 0 45 chr4 80580005 80580072 -75050048 + (TTTTTG)n Simple_repeat Simple_repeat 2 65 0 1 1199 337 312 193 64 chr4 80580415 80580622 -75049498 - RLTR12B LTR ERVK -38 490 268 1 1199 747 0 0 0 chr4 80580622 80580705 -75049415 + (TTCCC)n Simple_repeat Simple_repeat 4 86 0 1 1199 337 290 152 52 chr4 80580705 80580916 -75049204 - RLTR12B LTR ERVK -261 267 1 1 1199 974 331 76 26 chr4 80581303 80581835 -75048285 + MER21B LTR ERV1 20 617 -246 1 1199 1123 207 0 27 chr4 80582961 80583180 -75046940 - B3 SINE B2 -3 213 1 1 1199 261 0 0 0 chr4 80583200 80583229 -75046891 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1 1199 237 65 0 0 chr4 80583234 80583265 -75046855 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 1199 320 234 51 25 chr4 80583288 80583367 -75046753 - RSINE1 SINE B4 -84 81 1 1 1199 208 139 0 0 chr4 80584680 80584716 -75045404 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1199 319 347 11 46 chr4 80585353 80585528 -75044592 - L1MCa LINE L1 -5900 608 440 1 1199 257 259 151 24 chr4 80585653 80585819 -75044301 - L1MCa LINE L1 -6271 237 51 1 1199 640 321 97 67 chr4 80586971 80587271 -75042849 - MLT1F2 LTR MaLR -31 529 221 1 1199 223 296 0 0 chr4 80587380 80587434 -75042686 + GA-rich Low_complexity Low_complexity 1 54 0 1 1199 1208 260 49 40 chr4 80587833 80588182 -75041938 - MTE2a LTR MaLR -8 371 20 1 1199 900 256 0 22 chr4 80588479 80588663 -75041457 + B3 SINE B2 3 182 -34 1 1199 30 59 0 0 chr4 80588785 80588836 -75041284 + AT_rich Low_complexity Low_complexity 1 51 0 1 1199 355 253 116 0 chr4 80589054 80589149 -75040971 - PB1D10 SINE Alu -6 111 6 1 1199 2724 52 42 3 chr4 80589257 80589620 -75040500 - MTA_Mm LTR MaLR -24 372 5 1 1199 558 0 0 0 chr4 80589620 80589682 -75040438 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1199 381 308 110 16 chr4 80590007 80590270 -75039850 + Lx9 LINE L1 7047 7427 -217 1 1199 327 49 0 0 chr4 80590270 80590311 -75039809 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1199 267 311 169 0 chr4 80590499 80590647 -75039473 + MER63D DNA AcHobo 293 465 -596 1 1199 506 237 200 61 chr4 80590654 80590834 -75039286 + B3 SINE B2 3 207 -9 1 1199 34 0 0 0 chr4 80590965 80590999 -75039121 + AT_rich Low_complexity Low_complexity 1 34 0 1 1199 3123 49 3 3 chr4 80590999 80591389 -75038731 - L1Md_F3 LINE L1 -16 6568 6179 1 1199 343 277 20 0 chr4 80591477 80591578 -75038542 + MER63D DNA AcHobo 827 929 -132 1 1199 186 43 0 0 chr4 80591613 80591636 -75038484 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1199 749 33 0 0 chr4 80591637 80591727 -75038393 - B1_Mm SINE Alu -6 141 52 1 1199 397 136 19 162 chr4 80592054 80592159 -75037961 - MTC LTR MaLR 0 419 330 1 1199 2045 140 23 6 chr4 80592159 80592512 -75037608 - RLTR15 LTR ERVK 0 359 1 1 1199 1069 144 82 5 chr4 80592544 80592739 -75037381 - MTC LTR MaLR -211 210 1 1 1199 1175 257 98 7 chr4 80593630 80593983 -75036137 + MTD LTR MaLR 6 419 0 1 1199 435 333 21 42 chr4 80594112 80594256 -75035864 - RSINE1 SINE B4 0 165 25 1 1199 809 232 108 5 chr4 80594860 80595055 -75035065 - B3 SINE B2 0 216 2 1 1199 369 271 0 76 chr4 80595156 80595248 -75034872 + RSINE1 SINE B4 2 86 -79 1 1199 251 355 27 9 chr4 80596034 80596145 -75033975 - L2b LINE L2 -1 3374 3262 1 1199 23 33 0 0 chr4 80596855 80596885 -75033235 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 1970 61 4 0 chr4 80597074 80597321 -75032799 + L1_Mus1 LINE L1 6317 6564 -3 1 1199 1103 22 7 0 chr4 80598076 80598215 -75031905 + L1Md_A LINE L1 6442 6581 -1 1 1199 213 154 0 0 chr4 80598355 80598394 -75031726 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1199 450 0 0 0 chr4 80599314 80599364 -75030756 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1199 285 250 42 85 chr4 80600739 80600857 -75029263 - RLTR42 LTR ERVK -124 115 3 1 1199 743 243 37 37 chr4 80601081 80601269 -75028851 - B3A SINE B2 0 198 11 1 1199 186 407 42 0 chr4 80601619 80601737 -75028383 - MIRm SINE MIR -126 150 28 1 1199 253 267 71 98 chr4 80602543 80602655 -75027465 - PB1D9 SINE Alu -3 117 9 1 1199 288 360 124 16 chr4 80603282 80603668 -75026452 + L2b LINE L2 2049 2476 -943 1 1199 200 349 82 24 chr4 80604104 80604189 -75025931 + L2b LINE L2 3271 3360 -15 1 1199 27 0 0 0 chr4 80604508 80604535 -75025585 + AT_rich Low_complexity Low_complexity 1 27 0 1 1199 429 66 53 0 chr4 80604851 80604927 -75025193 + L1Md_F3 LINE L1 6505 6584 0 1 1199 386 341 65 7 chr4 80604954 80605093 -75025027 + B1F SINE Alu 1 147 -2 1 1199 225 343 14 0 chr4 80605103 80605173 -75024947 + ID4_ SINE ID 3 73 -10 1 1199 29 60 0 0 chr4 80605645 80605695 -75024425 + AT_rich Low_complexity Low_complexity 1 50 0 2 1199 229 269 128 8 chr4 80606149 80606280 -75023840 + MIRb SINE MIR 112 268 0 2 1199 262 333 10 68 chr4 80606411 80606514 -75023606 + MLT1J1 LTR MaLR 47 143 -301 2 149 36360 29 0 0 chr4 80607097 80613302 -75016818 - L1Md_T LINE L1 0 6585 285 2 1200 26 30 0 0 chr4 80613302 80613335 -75016785 + AT_rich Low_complexity Low_complexity 1 33 0 2 1200 228 222 18 36 chr4 80613927 80613946 -75016174 + CYRA11_Mm Unknown Y-chromosome 153 206 -410 2 1200 281 56 0 0 chr4 80613946 80613982 -75016138 - URR1B DNA MER1_type 0 225 190 2 1200 1009 247 59 56 chr4 80614008 80614155 -75015965 + MTE2a LTR MaLR 92 229 -150 2 1200 3034 143 121 59 chr4 80614155 80614432 -75015688 - RMER6C LTR ERVK -4 686 336 2 1200 405 0 0 0 chr4 80614432 80614477 -75015643 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1200 3034 143 121 59 chr4 80614477 80614845 -75015275 - RMER6C LTR ERVK -355 335 2 2 1200 1009 247 59 56 chr4 80614845 80614984 -75015136 + MTE2a LTR MaLR 230 379 0 2 1200 2828 200 81 27 chr4 80615650 80616617 -75013503 + MYSERV16_I-int LTR ERVK 1498 2842 0 2 1200 2482 193 14 22 chr4 80616617 80617114 -75013006 + RLTR16 LTR ERVK 1 493 -12 2 1200 849 170 23 41 chr4 80618215 80618387 -75011733 - Lx3C LINE L1 0 6973 6805 2 1200 871 103 0 31 chr4 80618388 80618518 -75011602 + ORR1A2 LTR MaLR 194 319 -8 2 1200 1151 152 0 0 chr4 80618522 80618706 -75011414 - Lx3C LINE L1 -642 6334 6151 2 1200 1130 119 28 28 chr4 80618751 80618932 -75011188 + B2_Mm2 SINE B2 3 183 -12 2 1200 436 333 123 80 chr4 80619719 80620247 -75009873 + MLT2B3 LTR ERVL 1 551 -3 2 1200 1119 68 0 40 chr4 80620412 80620564 -75009556 - B1_Mus1 SINE Alu -2 146 1 2 1200 4433 176 43 78 chr4 80620823 80621758 -75008362 + RMER19B LTR ERVK 1 902 0 2 1200 4156 27 0 0 chr4 80621921 80622433 -75007687 - L1_Mm LINE L1 -301 5582 5071 2 1200 2804 39 11 63 chr4 80622433 80622814 -75007306 + L1Md_F3 LINE L1 6210 6570 -14 2 1200 526 297 43 0 chr4 80622878 80623016 -75007104 + B1_Mur1 SINE Alu 6 149 0 2 1200 640 314 82 0 chr4 80623679 80623873 -75006247 - B3 SINE B2 -3 213 4 2 1200 209 57 0 28 chr4 80623890 80623926 -75006194 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2 1200 919 199 70 0 chr4 80624044 80624245 -75005875 - B3 SINE B2 -1 215 1 2 1200 278 328 39 8 chr4 80625201 80625330 -75004790 + Lx8 LINE L1 7152 7284 -189 2 1200 1081 290 136 34 chr4 80625380 80625886 -75004234 + Lx8 LINE L1 6909 7466 -7 2 1200 200 245 0 20 chr4 80626211 80626261 -75003859 + CT-rich Low_complexity Low_complexity 2 50 0 2 1200 1358 124 6 8 chr4 80626262 80626480 -75003640 + BGLII LTR ERVK 137 421 0 2 1200 202 225 0 0 chr4 80626650 80626690 -75003430 + T-rich Low_complexity Low_complexity 2 41 0 2 1200 761 270 116 29 chr4 80626766 80626859 -75003261 - RMER15 LTR ERVL 0 575 476 2 1200 2856 75 42 0 chr4 80626859 80627243 -75002877 + MTB LTR MaLR 1 400 0 2 1200 761 270 116 29 chr4 80627243 80627424 -75002696 - RMER15 LTR ERVL -100 475 278 2 1200 609 295 12 98 chr4 80627592 80627765 -75002355 - RSINE1 SINE B4 0 165 8 2 1200 1716 195 19 53 chr4 80627903 80628277 -75001843 - ORR1B2 LTR MaLR -4 363 3 2 1200 199 71 48 0 chr4 80628731 80628773 -75001347 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1200 947 240 40 0 chr4 80629091 80629291 -75000829 - B3 SINE B2 -7 209 2 2 1200 228 250 125 0 chr4 80630002 80630066 -75000054 - MLT1K LTR MaLR -2 593 522 2 1200 834 205 96 19 chr4 80630205 80630414 -74999706 - URR1B DNA MER1_type 0 225 1 2 1200 1101 243 117 59 chr4 80630606 80630964 -74999156 - MTEa LTR MaLR 0 379 1 2 1200 372 94 0 0 chr4 80631183 80631236 -74998884 + (TTAA)n Simple_repeat Simple_repeat 2 54 0 2 1200 528 274 69 82 chr4 80631286 80631445 -74998675 + B3 SINE B2 46 202 -14 2 1200 275 253 66 66 chr4 80631356 80631538 -74998582 - RMER17C LTR ERVK -75 335 154 2 1200 1636 216 58 13 chr4 80631509 80631885 -74998235 + MTC LTR MaLR 29 421 0 2 1200 1564 220 39 24 chr4 80631890 80632314 -74997806 + MT2A LTR ERVL 1 466 -67 2 1200 275 113 19 0 chr4 80632314 80632367 -74997753 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1200 621 0 0 0 chr4 80632367 80632436 -74997684 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 1200 718 251 113 44 chr4 80632436 80632484 -74997636 + MT2A LTR ERVL 467 532 -1 2 1200 330 174 10 42 chr4 80633058 80633154 -74996966 + GA-rich Low_complexity Low_complexity 4 96 0 2 1200 2062 211 72 81 chr4 80634205 80634833 -74995287 - Lx6 LINE L1 -308 7152 6531 2 1200 2337 224 32 51 chr4 80634842 80635335 -74994785 - Lx6 LINE L1 -1204 6256 5780 2 1200 231 36 0 0 chr4 80635335 80635363 -74994757 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1200 2337 187 68 5 chr4 80635363 80635701 -74994419 - Lx6 LINE L1 -1681 5779 5414 2 1200 2348 297 55 64 chr4 80635702 80636755 -74993365 + ORR1E-int LTR MaLR 335 1473 -107 2 1200 1185 309 25 44 chr4 80636783 80637148 -74992972 + ORR1E LTR MaLR 1 358 -1 2 1200 4539 174 45 18 chr4 80639154 80639429 -74990691 - L1_Mur3 LINE L1 -2124 3756 3476 2 1200 387 69 42 0 chr4 80639429 80639501 -74990619 + (TTG)n Simple_repeat Simple_repeat 2 76 0 2 1200 4539 174 45 18 chr4 80639501 80640076 -74990044 - L1_Mur3 LINE L1 -2405 3475 2866 2 1200 189 0 0 0 chr4 80640076 80640097 -74990023 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2 1200 4539 174 45 18 chr4 80640097 80640301 -74989819 - L1_Mur3 LINE L1 -3015 2865 2673 2 1200 711 115 64 14 chr4 80640300 80640441 -74989679 + L1_Mur3 LINE L1 4075 4222 -1658 2 1200 13305 126 5 4 chr4 80640443 80641616 -74988504 + L1VL4 LINE L1 357 1530 -2384 2 1200 3372 38 2 0 chr4 80641616 80642011 -74988109 - MTA_Mm LTR MaLR 0 396 1 2 1200 13305 104 8 9 chr4 80642011 80643868 -74986252 + L1VL4 LINE L1 1531 3378 -536 2 1200 6051 76 10 6 chr4 80643868 80644685 -74985435 - L1Md_F2 LINE L1 0 6582 5763 2 1200 8690 223 32 148 chr4 80644685 80646397 -74983723 + L1VL4 LINE L1 3374 4808 -1069 2 1200 2011 119 103 168 chr4 80646397 80646952 -74983168 + MURVY-LTR LTR ERV1 1 519 0 2 1200 8690 223 32 148 chr4 80646952 80647568 -74982552 + L1VL4 LINE L1 4809 5192 -685 2 1200 1059 278 21 12 chr4 80647581 80647916 -74982204 + Lx6 LINE L1 6376 6713 -747 2 1200 468 224 144 0 chr4 80647907 80648032 -74982088 - Lx6 LINE L1 -520 6940 6798 2 1200 1231 266 23 84 chr4 80648037 80648177 -74981943 + Lx6 LINE L1 7001 7144 -316 2 1200 408 55 0 0 chr4 80648177 80648232 -74981888 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 1200 1231 266 23 84 chr4 80648232 80648567 -74981553 + Lx6 LINE L1 7145 7447 -13 2 1200 181 390 27 45 chr4 80648938 80649048 -74981072 - L2c LINE L2 -221 3166 3059 2 1200 229 377 0 9 chr4 80649084 80649191 -74980929 + L2a LINE L2 3316 3421 -5 2 1200 23 33 0 0 chr4 80649931 80649961 -74980159 + AT_rich Low_complexity Low_complexity 1 30 0 2 1200 396 0 0 0 chr4 80650900 80650944 -74979176 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1200 477 90 0 0 chr4 80653455 80653522 -74976598 + (T)n Simple_repeat Simple_repeat 1 67 0 2 1200 2971 210 17 9 chr4 80653538 80654186 -74975934 - Lx7 LINE L1 -393 7303 6651 2 1200 7125 77 21 1 chr4 80654192 80655709 -74974411 - L1_Mus2 LINE L1 0 6566 5008 2 1200 6342 199 58 138 chr4 80655709 80658924 -74971196 - Lx7 LINE L1 -1041 6655 3676 2 1200 377 234 11 0 chr4 80658931 80659025 -74971095 - Lx7 LINE L1 -3889 1991 1897 2 1200 564 266 75 39 chr4 80659358 80659612 -74970508 - Lx7 LINE L1 -6882 846 584 2 1200 557 14 0 0 chr4 80660009 80660080 -74970040 - L1Md_A LINE L1 -1 6581 6511 2 1200 225 0 0 0 chr4 80660486 80660511 -74969609 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1200 423 296 47 144 chr4 80660725 80660945 -74969175 - L1M5 LINE L1 -1565 4581 4372 2 1200 610 206 184 22 chr4 80660945 80661124 -74968996 + B3 SINE B2 2 209 -7 2 1200 423 296 47 144 chr4 80661124 80661270 -74968850 - L1M5 LINE L1 -1775 4371 4262 2 1200 743 285 29 0 chr4 80661270 80661477 -74968643 - B3 SINE B2 -3 213 1 2 1200 423 296 47 144 chr4 80661477 80661642 -74968478 - L1M5 LINE L1 -1885 4261 4102 2 1200 193 98 49 0 chr4 80661647 80661688 -74968432 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 2 1200 1727 164 16 3 chr4 80661808 80662119 -74968001 - Lx4A LINE L1 -481 6577 6263 2 1200 1268 201 35 32 chr4 80662119 80662402 -74967718 - RMER5 LTR ERV1 -238 296 13 2 1200 661 301 0 0 chr4 80664524 80664677 -74965443 + B3 SINE B2 3 155 -61 2 1200 389 295 68 58 chr4 80664805 80665215 -74964905 - L1M3 LINE L1 -3505 2635 2222 2 1200 547 249 140 11 chr4 80665382 80665646 -74964474 + L1MB1 LINE L1 5804 6101 -67 2 1200 978 251 36 113 chr4 80665696 80666033 -74964087 + MTE2b LTR MaLR 4 314 -65 2 1200 1108 199 203 13 chr4 80667757 80668068 -74962052 + ORR1D1 LTR MaLR 1 370 -4 2 1200 25 0 0 0 chr4 80668382 80668407 -74961713 + AT_rich Low_complexity Low_complexity 1 25 0 2 1200 204 40 0 0 chr4 80670522 80670547 -74959573 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1200 985 114 41 21 chr4 80670547 80670841 -74959279 + (TAGA)n Simple_repeat Simple_repeat 1 300 0 2 1200 222 150 0 0 chr4 80670841 80670881 -74959239 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 2 1200 266 215 13 0 chr4 80671095 80671174 -74958946 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 1200 1828 213 52 10 chr4 80671232 80671617 -74958503 + MTD LTR MaLR 5 405 -14 2 1200 182 91 30 0 chr4 80673940 80673973 -74956147 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 1200 932 25 0 0 chr4 80673979 80674097 -74956023 + L1Md_F2 LINE L1 6201 6318 -264 2 1200 7503 31 2 1 chr4 80674097 80674989 -74955131 + L1Md_F3 LINE L1 5678 6570 -14 2 1200 3213 165 43 13 chr4 80675000 80675259 -74954861 + RMER17D2 LTR ERVK 165 433 -376 2 1200 513 0 0 0 chr4 80675259 80675316 -74954804 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1200 3213 165 43 13 chr4 80675316 80675682 -74954438 + RMER17D2 LTR ERVK 434 808 -1 2 1200 302 356 6 6 chr4 80675733 80675911 -74954209 - L1MD3 LINE L1 -237 6096 5919 2 1200 432 252 133 8 chr4 80675953 80676081 -74954039 - B1_Mur2 SINE Alu -5 144 1 2 1200 331 339 73 22 chr4 80676082 80676260 -74953860 - L1MD3 LINE L1 -2073 5922 5736 2 1200 710 287 110 19 chr4 80677252 80677515 -74952605 - ORR1E LTR MaLR -6 353 67 2 1200 1908 280 45 30 chr4 80678079 80679073 -74951047 + Lx8 LINE L1 1218 2214 -3666 2 1200 2373 274 51 118 chr4 80679058 80679980 -74950140 + Lx8 LINE L1 4389 5336 -544 2 1200 531 240 136 0 chr4 80679980 80680105 -74950015 + B1F2 SINE Alu 6 147 -2 2 1200 2373 274 51 118 chr4 80680105 80680211 -74949909 + Lx8 LINE L1 5337 5447 -433 2 1200 197 33 0 32 chr4 80680211 80680242 -74949878 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1200 2373 274 51 118 chr4 80680242 80680530 -74949590 + Lx8 LINE L1 5448 5732 -148 2 1200 3568 77 0 2 chr4 80680559 80681041 -74949079 - L1_Mm LINE L1 -115 5768 5288 2 1200 326 177 12 37 chr4 80681079 80681093 -74949027 - L1_Mm LINE L1 -566 5317 5304 2 1200 1463 83 0 5 chr4 80681093 80681299 -74948821 - L1Md_F2 LINE L1 -10 6572 6368 2 1200 326 177 12 37 chr4 80681299 80681366 -74948754 - L1_Mm LINE L1 -580 5303 5238 2 1200 5951 73 4 0 chr4 80681366 80682143 -74947977 + L1_Mus1 LINE L1 5779 6558 -9 2 1200 654 13 0 0 chr4 80682143 80682218 -74947902 + (GAA)n Simple_repeat Simple_repeat 3 77 0 2 1200 291 292 113 62 chr4 80682218 80682554 -74947566 + Lx8 LINE L1 5793 6145 -1328 2 1200 478 143 12 0 chr4 80682554 80682638 -74947482 + Lx4A LINE L1 6145 6229 -829 2 1200 881 337 48 30 chr4 80682636 80683242 -74946878 + Lx8 LINE L1 6723 7339 -134 2 1200 290 263 66 0 chr4 80684335 80684411 -74945709 - ORR1D1 LTR MaLR 0 374 294 3 1200 439 283 57 49 chr4 80684529 80684774 -74945346 - RLTR15 LTR ERVK -68 291 45 3 1200 1265 228 20 8 chr4 80684867 80685119 -74945001 - ORR1D1 LTR MaLR -119 255 1 3 1200 3667 213 39 23 chr4 80685382 80686211 -74943909 + Lx5 LINE L1 6198 7040 -10 3 1200 221 0 0 33 chr4 80686211 80686241 -74943879 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1200 850 155 0 14 chr4 80686938 80687082 -74943038 - RMER19C LTR ERVK 0 611 470 3 1200 27 0 0 26 chr4 80687082 80687098 -74943022 + AT_rich Low_complexity Low_complexity 1 16 0 3 1200 5497 16 0 0 chr4 80687098 80687719 -74942401 - L1Md_A LINE L1 -1 6581 5961 3 1200 27 0 0 26 chr4 80687719 80687740 -74942380 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 892 57 0 0 chr4 80687759 80687922 -74942198 + L1Md_F2 LINE L1 6437 6582 0 3 1200 1379 216 146 14 chr4 80687994 80688370 -74941750 - RMER19C LTR ERVK -128 483 1 3 1200 243 289 18 80 chr4 80688550 80688663 -74941457 - Charlie5 DNA MER1_type -2487 137 32 3 1200 1061 248 62 28 chr4 80688858 80689148 -74940972 + MTE2b LTR MaLR 80 379 0 3 1200 21 36 0 0 chr4 80690224 80690252 -74939868 + AT_rich Low_complexity Low_complexity 1 28 0 3 1200 459 0 0 0 chr4 80690353 80690404 -74939716 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1200 1220 241 231 10 chr4 80690519 80691035 -74939085 - Lx8 LINE L1 -285 7188 6559 3 1200 1077 108 0 0 chr4 80691061 80691228 -74938892 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 3 1200 372 323 61 37 chr4 80692862 80693026 -74937094 + RMER5 LTR ERV1 35 202 -332 3 1200 1009 266 160 80 chr4 80693104 80693173 -74936947 - MTC-int LTR MaLR -731 527 456 3 1200 243 88 0 0 chr4 80693173 80693207 -74936913 + (CCA)n Simple_repeat Simple_repeat 3 36 0 3 1200 1009 266 160 80 chr4 80693207 80693624 -74936496 - MTC-int LTR MaLR -803 455 2 3 1200 1183 236 126 52 chr4 80693653 80694001 -74936119 - MTD LTR MaLR -45 374 1 3 1200 328 345 0 8 chr4 80694009 80694129 -74935991 - Lx8 LINE L1 -586 6887 6769 3 1200 436 307 53 0 chr4 80694352 80694502 -74935618 - MLT1E2 LTR MaLR -333 294 137 3 1200 601 205 18 0 chr4 80695531 80695702 -74934418 + CT-rich Low_complexity Low_complexity 5 178 0 3 1200 419 325 19 13 chr4 80696389 80696545 -74933575 - Lx8 LINE L1 -183 7290 7134 3 1200 2340 234 26 50 chr4 80696980 80697560 -74932560 - RMER15 LTR ERVL -1 574 9 3 1200 340 283 56 28 chr4 80699136 80699278 -74930842 + L2a LINE L2 3276 3421 -5 3 1200 21 0 0 0 chr4 80699287 80699308 -74930812 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 429 20 0 0 chr4 80700685 80700735 -74929385 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1200 2467 289 101 35 chr4 80700799 80701922 -74928198 - Lx8 LINE L1 -97 7376 6180 3 1200 570 103 0 0 chr4 80702024 80702111 -74928009 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1200 240 302 53 41 chr4 80702112 80702281 -74927839 - Lx8 LINE L1 -60 7413 7243 3 1200 372 22 0 0 chr4 80702490 80702535 -74927585 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3 1200 264 59 0 0 chr4 80702538 80702572 -74927548 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1200 680 252 0 0 chr4 80702573 80702708 -74927412 - B1_Mur2 SINE Alu -12 137 3 3 1200 365 273 153 11 chr4 80702838 80703027 -74927093 + L1MC5 LINE L1 7695 7910 -51 3 1200 206 308 130 52 chr4 80706505 80706659 -74923461 - MIRc SINE MIR -52 216 51 3 1200 244 318 0 0 chr4 80707532 80707595 -74922525 + B4 SINE B4 11 73 -219 3 1200 246 270 40 13 chr4 80708916 80708991 -74921129 + L2a LINE L2 3350 3426 0 3 1200 2111 84 17 10 chr4 80709015 80709317 -74920803 + L1_Mus3 LINE L1 6334 6637 -1 3 1200 381 22 0 0 chr4 80709398 80709444 -74920676 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 1200 867 163 43 38 chr4 80710810 80710995 -74919125 - B2_Mm2 SINE B2 -8 187 2 3 1200 378 0 0 0 chr4 80710995 80711037 -74919083 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1200 365 324 57 39 chr4 80712045 80712328 -74917792 + B4A SINE B4 1 288 -4 3 1200 39058 11 0 6 chr4 80712652 80719052 -74911068 - L1Md_A LINE L1 0 6582 225 3 1200 6631 96 39 9 chr4 80720274 80721261 -74908859 + Lx3_Mus LINE L1 5986 7001 -8 3 1200 787 265 95 73 chr4 80721361 80721760 -74908360 + Lx8 LINE L1 7063 7470 -3 3 1200 244 317 83 122 chr4 80722492 80722540 -74907580 - RMER13A LTR ERVK -83 544 491 3 1200 2836 37 5 46 chr4 80722540 80722912 -74907208 - IAPEY2_LTR LTR ERVK 0 357 1 3 1200 501 314 75 94 chr4 80722912 80723372 -74906748 - RMER13A LTR ERVK -137 490 1 3 1200 212 258 32 0 chr4 80724239 80724301 -74905819 + CT-rich Low_complexity Low_complexity 5 68 0 3 1200 342 0 0 0 chr4 80724702 80724740 -74905380 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1200 1293 299 82 34 chr4 80725449 80726093 -74904027 - Lx8 LINE L1 0 7473 6799 3 1200 405 392 61 30 chr4 80726372 80726667 -74903453 - LTR16A LTR ERVL -13 438 135 3 1200 182 171 24 0 chr4 80727068 80727109 -74903011 + CT-rich Low_complexity Low_complexity 1 42 0 3 1200 2480 225 48 11 chr4 80727156 80727906 -74902214 + Lx4B LINE L1 6219 6990 -10 3 1200 845 227 103 0 chr4 80728009 80728203 -74901917 + B3 SINE B2 1 214 -2 3 1200 35 41 0 0 chr4 80728217 80728266 -74901854 + AT_rich Low_complexity Low_complexity 1 49 0 3 1200 1037 110 0 27 chr4 80729133 80729282 -74900838 + B1_Mus2 SINE Alu 2 146 -1 3 1200 180 0 0 0 chr4 80729305 80729325 -74900795 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1200 205 309 141 39 chr4 80729889 80730017 -74900103 - MIR3 SINE MIR -64 144 4 3 1200 396 0 0 0 chr4 80730356 80730400 -74899720 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1200 620 305 43 17 chr4 80730756 80730986 -74899134 + MER2 DNA MER2_type 83 318 -27 3 1200 1011 125 139 52 chr4 80732015 80732318 -74897802 + RMER17B LTR ERVK 1 332 -626 3 1200 2018 165 104 15 chr4 80732289 80732701 -74897419 + RMER17B LTR ERVK 510 958 0 3 1200 545 28 14 0 chr4 80732747 80732818 -74897302 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1200 230 0 33 0 chr4 80732954 80732984 -74897136 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1200 245 335 111 46 chr4 80733198 80733414 -74896706 + MIRb SINE MIR 29 258 -10 3 1200 1375 270 61 23 chr4 80733529 80734173 -74895947 - L1M2 LINE L1 -1176 4967 4300 3 1200 731 248 315 10 chr4 80734179 80734490 -74895630 + MTD LTR MaLR 2 407 -12 3 1200 1699 300 103 34 chr4 80734495 80735868 -74894252 - L1_Mur3 LINE L1 -1620 4260 2793 3 1200 885 297 14 25 chr4 80736158 80736438 -74893682 - B4A SINE B4 -14 278 2 3 1200 633 299 35 83 chr4 80736695 80737034 -74893086 - MLT1B LTR MaLR -4 386 64 3 1200 3695 152 17 17 chr4 80737413 80738008 -74892112 + RLTR17 LTR ERVK 98 692 0 3 1200 26 30 0 0 chr4 80738786 80738819 -74891301 + AT_rich Low_complexity Low_complexity 1 33 0 3 1200 232 160 19 39 chr4 80738902 80738913 -74891207 + polypyrimidine Low_complexity Low_complexity 41 51 0 3 1200 1092 221 156 36 chr4 80738913 80739093 -74891027 - ORR1D1 LTR MaLR 0 374 169 3 1200 510 17 0 0 chr4 80739093 80739152 -74890968 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1200 1092 221 156 36 chr4 80739152 80739305 -74890815 - ORR1D1 LTR MaLR -206 168 1 3 1200 232 160 19 39 chr4 80739305 80739345 -74890775 + polypyrimidine Low_complexity Low_complexity 1 40 0 3 1201 22 56 0 0 chr4 80740748 80740784 -74889336 + AT_rich Low_complexity Low_complexity 1 36 0 3 1201 1109 200 5 0 chr4 80740939 80741134 -74888986 + B3 SINE B2 5 200 -16 3 1201 526 317 95 24 chr4 80741355 80741649 -74888471 + RMER15 LTR ERVL 261 575 0 3 1201 284 346 113 63 chr4 80743197 80743419 -74886701 - MLT1A0 LTR MaLR -132 233 1 3 1201 207 270 58 83 chr4 80744296 80744417 -74885703 + L2b LINE L2 2706 2823 -596 3 1201 239 370 62 40 chr4 80744485 80744710 -74885410 + L2b LINE L2 3097 3326 -49 3 1201 275 0 29 0 chr4 80745127 80745162 -74884958 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1201 280 292 40 30 chr4 80745492 80745591 -74884529 - MIRb SINE MIR -57 211 112 3 1201 342 303 180 0 chr4 80746565 80746687 -74883433 + B3A SINE B2 1 144 -54 3 1201 297 51 0 0 chr4 80746701 80746740 -74883380 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1201 2472 98 8 43 chr4 80747687 80748135 -74881985 - L1Md_F2 LINE L1 0 6582 6202 3 1201 238 323 175 40 chr4 80748375 80748527 -74881593 - Charlie24 DNA MER1_type -617 1833 1671 3 1201 1716 136 45 75 chr4 80748527 80748861 -74881259 - ORR1A3 LTR MaLR -2 324 1 3 1201 238 323 175 40 chr4 80748861 80749011 -74881109 - Charlie24 DNA MER1_type -780 1670 1490 3 1201 6411 80 16 2 chr4 80749441 80750305 -74879815 - L1_Mus4 LINE L1 -1 6635 5760 3 1201 3368 113 70 91 chr4 80750305 80750768 -74879352 - RMER17A LTR ERVK -5 746 281 3 1201 855 60 17 0 chr4 80750768 80750885 -74879235 + L1Md_F2 LINE L1 6445 6563 -19 3 1201 3368 113 70 91 chr4 80750885 80751183 -74878937 - RMER17A LTR ERVK -471 280 1 3 1201 1086 69 0 0 chr4 80751183 80751327 -74878793 - L1_Mus4 LINE L1 -866 5770 5627 3 1201 343 313 162 29 chr4 80751368 80751677 -74878443 - Charlie24 DNA MER1_type -1445 1005 656 3 1201 22 0 0 0 chr4 80751812 80751834 -74878286 + AT_rich Low_complexity Low_complexity 1 22 0 3 1201 453 303 124 28 chr4 80752082 80752299 -74877821 + RMER15 LTR ERVL 324 561 -14 3 1201 31 26 0 0 chr4 80753379 80753417 -74876703 + AT_rich Low_complexity Low_complexity 1 38 0 3 1201 941 64 0 1 chr4 80754581 80754706 -74875414 + L1Md_F2 LINE L1 5472 5586 -297 3 1201 8063 43 2 4 chr4 80754706 80755703 -74874417 + L1Md_F2 LINE L1 5587 6581 -1 3 1201 548 278 46 108 chr4 80756329 80756877 -74873243 - RMER20A LTR ERVK -71 556 1 3 1201 938 294 13 15 chr4 80757982 80758460 -74871660 + Lx5 LINE L1 6455 6886 -574 3 1201 650 288 49 5 chr4 80758463 80758648 -74871472 + B3 SINE B2 23 215 -1 3 1201 392 374 3 2 chr4 80758830 80758959 -74871161 + PB1D7 SINE Alu 10 140 -10 3 1201 1795 237 10 20 chr4 80759045 80759445 -74870675 + MTD LTR MaLR 3 398 -21 3 1201 1043 322 89 37 chr4 80760140 80760982 -74869138 - Lx8 LINE L1 -38 7435 6550 3 1201 24 0 0 0 chr4 80760991 80761015 -74869105 + AT_rich Low_complexity Low_complexity 1 24 0 4 1201 699 227 127 37 chr4 80762926 80763316 -74866804 + MT2A LTR ERVL 10 487 -114 4 1201 289 292 171 34 chr4 80763393 80763691 -74866429 - L1M5 LINE L1 -411 5829 5491 4 1201 625 235 45 13 chr4 80763830 80763985 -74866135 + RSINE1 SINE B4 6 165 0 4 1201 300 298 66 19 chr4 80764034 80764140 -74865980 - L1MD LINE L1 -1221 4925 4815 4 1201 24 53 0 0 chr4 80764172 80764210 -74865910 + AT_rich Low_complexity Low_complexity 1 38 0 4 1201 924 291 27 63 chr4 80764260 80764626 -74865494 - ORR1E LTR MaLR -2 357 5 4 1201 3868 174 13 24 chr4 80764972 80765678 -74864442 + Lx5 LINE L1 6326 7023 -27 4 1201 243 0 0 0 chr4 80765690 80765717 -74864403 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1201 409 287 2 8 chr4 80765730 80765832 -74864288 + PB1D10 SINE Alu 6 108 -9 4 1201 197 297 62 0 chr4 80765967 80766031 -74864089 - L2 LINE L2 -1325 2094 2027 4 1201 690 318 64 0 chr4 80766031 80766251 -74863869 + B4A SINE B4 59 292 0 4 1201 303 247 101 53 chr4 80766789 80766854 -74863266 - Lx8 LINE L1 -1546 5927 5861 4 1201 447 19 0 0 chr4 80766854 80766906 -74863214 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 1201 309 233 153 21 chr4 80766906 80767078 -74863042 - Lx8 LINE L1 -22 5858 5640 4 1201 1499 318 87 63 chr4 80767078 80768355 -74861765 + Lx8 LINE L1 6165 7472 -1 4 1201 1224 118 39 10 chr4 80768806 80769011 -74861109 + Lx2B LINE L1 6786 6996 -4 4 1201 432 130 0 0 chr4 80770556 80770625 -74859495 + (TCC)n Simple_repeat Simple_repeat 1 69 0 4 1201 267 263 0 62 chr4 80770631 80770653 -74859467 - RMER5 LTR ERV1 -450 84 67 4 1201 986 99 6 0 chr4 80770653 80770815 -74859305 + (TC)n Simple_repeat Simple_repeat 2 164 0 4 1201 267 263 0 62 chr4 80770815 80770873 -74859247 - RMER5 LTR ERV1 -468 66 9 4 1201 332 59 43 14 chr4 80772989 80773058 -74857062 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 4 1201 702 35 0 0 chr4 80774115 80774200 -74855920 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1201 263 405 64 19 chr4 80774373 80774529 -74855591 - MLT1G3 LTR MaLR -158 437 275 4 1201 1726 198 34 82 chr4 80774535 80775295 -74854825 + RMER6C LTR ERVK 1 670 -20 4 1201 255 170 0 0 chr4 80776219 80776266 -74853854 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1201 3107 102 4 23 chr4 80776723 80777194 -74852926 - L1Md_F2 LINE L1 -7 6575 6114 4 1201 4039 56 1 0 chr4 80777194 80777811 -74852309 + L1Md_F2 LINE L1 5496 6114 -468 4 1201 421 255 64 10 chr4 80778187 80778343 -74851777 - B3 SINE B2 -1 215 33 4 1201 294 317 142 34 chr4 80778645 80778875 -74851245 + MIRb SINE MIR 19 260 -2 4 1201 606 282 128 9 chr4 80779638 80779856 -74850264 + RMER21B LTR ERV1 322 565 -277 4 1201 1501 229 30 24 chr4 80780199 80780530 -74849590 - ORR1D2 LTR MaLR -3 367 35 4 1201 1587 139 4 8 chr4 80780531 80780770 -74849350 - ORR1A2 LTR MaLR 0 327 90 4 1201 872 293 46 74 chr4 80780821 80781287 -74848833 - RMER15 LTR ERVL 0 575 7 4 1201 8844 11 1 0 chr4 80781288 80782283 -74847837 + L1Md_A LINE L1 5587 6582 0 4 1201 434 331 88 112 chr4 80782301 80782621 -74847499 + MLT1A LTR MaLR 24 344 -30 4 1201 242 330 11 33 chr4 80782952 80783043 -74847077 + PB1D10 SINE Alu 8 96 -21 4 1201 506 190 9 0 chr4 80783043 80783159 -74846961 + GA-rich Low_complexity Low_complexity 4 120 0 4 1201 1354 45 6 6 chr4 80783159 80783338 -74846782 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 4 1201 813 256 10 10 chr4 80784248 80784445 -74845675 - RMER15 LTR ERVL -12 563 367 4 1201 921 97 0 0 chr4 80784643 80784777 -74845343 + (GAA)n Simple_repeat Simple_repeat 3 136 0 4 1201 586 287 123 25 chr4 80785244 80785875 -74844245 - L1MD LINE L1 -403 5776 5081 4 1201 222 37 0 0 chr4 80786086 80786113 -74844007 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1201 884 253 62 31 chr4 80786916 80787173 -74842947 - MLT1C LTR MaLR -200 267 3 4 1201 814 266 14 0 chr4 80787659 80787877 -74842243 + Lx8 LINE L1 6277 6497 -976 4 1201 2714 86 5 28 chr4 80788073 80788467 -74841653 + L1_Mus3 LINE L1 6254 6638 0 4 1201 36 40 0 0 chr4 80788801 80788851 -74841269 + AT_rich Low_complexity Low_complexity 1 50 0 4 1201 22 0 0 0 chr4 80788974 80788996 -74841124 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 36028 39 3 0 chr4 80789151 80794494 -74835626 - L1Md_T LINE L1 0 6585 1230 4 1201 7694 79 10 16 chr4 80794493 80795787 -74834333 - L1Md_T LINE L1 -5409 1113 2 4 1201 14673 172 40 27 chr4 80796050 80798259 -74831861 - Lx5 LINE L1 -11 7039 4800 4 1201 369 0 0 0 chr4 80798259 80798300 -74831820 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1201 14673 164 53 36 chr4 80798300 80800452 -74829668 - Lx5 LINE L1 -1078 4799 2600 4 1201 513 280 68 34 chr4 80800481 80800688 -74829432 + MurERV4-int LTR ERVK 2868 3081 -2179 4 1201 1128 108 6 0 chr4 80800694 80800851 -74829269 + B2_Mm1a SINE B2 1 158 -35 4 1201 279 0 0 0 chr4 80800851 80800882 -74829238 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 4 1201 3095 202 8 32 chr4 80800907 80801632 -74828488 + MYSERV6-int LTR ERVK 2535 3242 -5717 4 1201 1575 256 98 18 chr4 80801613 80801973 -74828147 + MYSERV6-int LTR ERVK 4116 4484 -2066 4 1201 252 0 0 0 chr4 80801973 80802001 -74828119 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1201 1575 220 62 46 chr4 80802001 80802350 -74827770 + MYSERV6-int LTR ERVK 4485 4720 -1830 4 1201 3917 11 13 8 chr4 80802350 80802826 -74827294 + L1Md_A LINE L1 6074 6551 -31 4 1201 2259 71 0 0 chr4 80802824 80803121 -74826999 - L1Md_F2 LINE L1 -189 6393 6097 4 1201 216 232 28 28 chr4 80804718 80804789 -74825331 + GA-rich Low_complexity Low_complexity 3 73 0 4 1201 232 216 0 0 chr4 80804793 80804844 -74825276 + MTE2a LTR MaLR 2 52 -327 4 1201 4021 75 4 11 chr4 80804904 80805431 -74824689 - L1_Mus1 LINE L1 -1 6566 6044 4 1201 5254 102 1 0 chr4 80805431 80806213 -74823907 + L1_Mm LINE L1 4451 5233 -650 4 1201 1222 41 0 0 chr4 80806246 80806391 -74823729 - B1_Mus2 SINE Alu -1 146 2 4 1201 568 285 99 15 chr4 80806406 80806656 -74823464 + MTE2a LTR MaLR 127 383 -36 4 1201 676 293 69 9 chr4 80807351 80807699 -74822421 + L1MA9 LINE L1 5771 6139 -173 4 1201 37295 33 5 7 chr4 80807697 80813878 -74816242 - L1Md_T LINE L1 0 6582 413 4 1201 581 285 60 38 chr4 80814305 80814571 -74815549 + RMER15 LTR ERVL 297 568 -7 4 1201 1974 210 36 75 chr4 80815470 80815710 -74814410 - MTC LTR MaLR 0 421 197 4 1201 1351 70 5 0 chr4 80815710 80815895 -74814225 - L1_Mus2 LINE L1 -1 6565 6380 4 1201 1974 210 36 75 chr4 80815895 80816092 -74814028 - MTC LTR MaLR -225 196 1 4 1201 181 91 22 43 chr4 80816763 80816809 -74813311 + (TTG)n Simple_repeat Simple_repeat 1 45 0 4 1201 738 175 156 0 chr4 80816839 80816993 -74813127 + RMER15 LTR ERVL 25 202 -373 4 1201 608 277 0 6 chr4 80816993 80817153 -74812967 - Lx9 LINE L1 -1107 6537 6379 4 1201 288 294 0 21 chr4 80817183 80817277 -74812843 - Lx9 LINE L1 -402 7242 7151 4 1201 217 147 0 0 chr4 80817875 80817909 -74812211 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1201 933 226 108 0 chr4 80818495 80818690 -74811430 - B3 SINE B2 0 216 1 4 1201 1363 247 87 8 chr4 80819236 80819628 -74810492 - Lx5 LINE L1 -8 7042 6620 4 1201 217 337 74 0 chr4 80820768 80820863 -74809257 + MIRb SINE MIR 94 195 -73 4 1201 491 281 48 149 chr4 80822502 80822883 -74807237 - MTEa LTR MaLR -11 368 42 4 1201 2534 160 84 16 chr4 80822883 80823372 -74806748 + RLTR28 LTR ERVL 1 522 -2 4 1201 491 261 52 143 chr4 80823372 80823402 -74806718 - MTEa LTR MaLR -338 41 15 4 1201 543 56 0 0 chr4 80825472 80825543 -74804577 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1201 341 301 254 22 chr4 80825547 80825775 -74804345 - B4A SINE B4 -11 281 1 4 1201 225 303 10 0 chr4 80826203 80826302 -74803818 - L1M1 LINE L1 -867 5433 5334 4 1201 26 30 0 0 chr4 80827275 80827308 -74802812 + AT_rich Low_complexity Low_complexity 1 33 0 4 1201 206 118 0 0 chr4 80827728 80827762 -74802358 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 4 1201 351 0 0 0 chr4 80828777 80828816 -74801304 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1201 351 0 0 0 chr4 80828817 80828856 -74801264 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1201 371 352 35 35 chr4 80828872 80829016 -74801104 - RSINE1 SINE B4 -17 148 5 4 1201 698 139 0 0 chr4 80829079 80829187 -74800933 - B2_Mm2 SINE B2 -87 108 1 4 1201 242 402 19 0 chr4 80829314 80829421 -74800699 - MER45B DNA Tip100 -926 114 6 4 1201 195 367 66 33 chr4 80830553 80830705 -74799415 - L2 LINE L2 -459 2960 2804 4 1201 1562 172 61 117 chr4 80831062 80831437 -74798683 - ORR1B1 LTR MaLR 0 394 41 4 1201 2151 202 67 11 chr4 80831469 80831945 -74798175 + RLTR11A2 LTR ERVK 1 503 -24 4 1201 203 171 0 0 chr4 80832692 80832727 -74797393 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1201 23 0 0 0 chr4 80833783 80833806 -74796314 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 234 268 0 0 chr4 80834850 80834973 -74795147 + (CGG)n Simple_repeat Simple_repeat 3 125 0 4 1201 315 0 0 0 chr4 80836080 80836115 -74794005 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1201 21 36 0 0 chr4 80836523 80836551 -74793569 + AT_rich Low_complexity Low_complexity 1 28 0 4 1201 243 237 67 88 chr4 80836774 80836968 -74793152 - LTR16B1 LTR ERVL -21 459 270 4 1201 576 0 0 0 chr4 80837117 80837181 -74792939 + (GAAA)n Simple_repeat Simple_repeat 4 67 0 4 1201 492 18 0 0 chr4 80837666 80837723 -74792397 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1201 762 275 93 50 chr4 80837881 80838279 -74791841 - Charlie5 DNA MER1_type -27 2597 2183 4 1201 522 0 0 0 chr4 80838324 80838382 -74791738 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1201 721 247 46 21 chr4 80838410 80838604 -74791516 - B4A SINE B4 -22 270 72 4 1201 540 0 0 0 chr4 80838621 80838681 -74791439 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1201 272 276 13 0 chr4 80838685 80838761 -74791359 - Charlie5 DNA MER1_type -433 2191 2115 4 1201 485 275 28 37 chr4 80838836 80839026 -74791094 - L1_Mur3 LINE L1 -1094 5046 4831 5 1201 1270 317 88 24 chr4 80839018 80839696 -74790424 - Lx8 LINE L1 -555 6918 6197 5 1201 1742 213 143 24 chr4 80839711 80840206 -74789914 - RMER15 LTR ERVL 0 575 22 5 1201 286 215 0 44 chr4 80840248 80840316 -74789804 - RMER15 LTR ERVL -510 65 1 5 1201 222 319 14 14 chr4 80840347 80840429 -74789691 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1201 261 0 0 0 chr4 80840429 80840458 -74789662 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1201 222 319 14 14 chr4 80840458 80840515 -74789605 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1201 765 330 78 25 chr4 80840518 80841046 -74789074 + Lx8 LINE L1 6918 7473 0 5 1201 282 362 49 39 chr4 80841062 80841266 -74788854 + MLT2D LTR ERVL 122 327 -87 5 1201 383 178 108 12 chr4 80841765 80841928 -74788192 - Ricksha DNA MuDR -495 2751 2558 5 1201 310 277 72 14 chr4 80841928 80842067 -74788053 - B1F SINE Alu 0 149 3 5 1201 304 294 29 7 chr4 80842352 80842489 -74787631 - L1MA9 LINE L1 -413 5899 5760 5 1201 1198 265 46 34 chr4 80842573 80842901 -74787219 - ORR1D2 LTR MaLR 0 370 39 5 1201 694 267 98 70 chr4 80843004 80843557 -74786563 - L1MA9 LINE L1 -264 5583 5053 5 1201 1805 185 86 22 chr4 80843633 80843993 -74786127 + ORR1B1 LTR MaLR 4 386 -8 5 1201 225 158 0 0 chr4 80844094 80844132 -74785988 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1201 450 176 0 0 chr4 80844132 80844217 -74785903 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1201 250 340 139 10 chr4 80844782 80844883 -74785237 - B3A SINE B2 -75 123 10 5 1201 4343 78 2 0 chr4 80845418 80845998 -74784122 + L1Md_F2 LINE L1 392 972 -5644 5 1201 28083 75 5 2 chr4 80846006 80850004 -74780116 + L1Md_F2 LINE L1 1577 5586 -297 5 1201 7779 53 15 4 chr4 80850004 80850989 -74779131 + L1Md_F2 LINE L1 5587 6582 0 5 1201 668 194 8 25 chr4 80851168 80851316 -74778804 + B1F SINE Alu 6 149 0 5 1201 544 277 73 31 chr4 80851340 80851627 -74778493 - Ricksha DNA MuDR -1682 1564 1266 5 1201 501 222 125 12 chr4 80851744 80851904 -74778216 - Ricksha DNA MuDR -3059 187 10 5 1201 555 316 46 42 chr4 80853754 80853995 -74776125 - MLT1A0 LTR MaLR -123 242 1 5 1201 387 262 63 7 chr4 80854320 80854465 -74775655 - Lx9 LINE L1 -1181 6463 6246 5 1201 243 0 0 0 chr4 80854465 80854492 -74775628 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 5 1201 499 282 45 11 chr4 80854566 80854873 -74775247 - Lx9 LINE L1 -1619 6025 5628 5 1201 1393 253 79 43 chr4 80854964 80855274 -74774846 + MTD LTR MaLR 5 331 -88 5 1201 1120 177 28 0 chr4 80855274 80855489 -74774631 - URR1B DNA MER1_type 0 225 5 5 1201 1393 253 79 43 chr4 80855489 80855571 -74774549 + MTD LTR MaLR 332 411 -8 5 1201 789 243 0 70 chr4 80855724 80855923 -74774197 - B3A SINE B2 -13 185 1 5 1201 340 308 142 27 chr4 80856409 80856669 -74773451 + B4 SINE B4 3 292 0 5 1201 2944 84 0 0 chr4 80856850 80857241 -74772879 + L1Md_F LINE L1 211 601 -5918 5 1201 2051 28 20 0 chr4 80857238 80857492 -74772628 + L1Md_F2 LINE L1 5328 5586 -297 5 1201 8284 33 14 0 chr4 80857493 80858470 -74771650 + L1Md_F2 LINE L1 5588 6578 -4 5 1201 798 77 0 0 chr4 80858629 80858733 -74771387 - B1_Mus2 SINE Alu -10 137 34 5 1201 2251 296 62 68 chr4 80859814 80861868 -74768252 - L1_Mur3 LINE L1 -10 5837 3795 5 1201 1166 140 10 0 chr4 80861868 80862061 -74768059 + Lx3A LINE L1 6736 6930 -51 5 1201 25 51 0 0 chr4 80862069 80862108 -74768012 + AT_rich Low_complexity Low_complexity 1 39 0 5 1201 381 22 0 0 chr4 80862116 80862162 -74767958 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1201 180 111 0 0 chr4 80862612 80862639 -74767481 + (CAT)n Simple_repeat Simple_repeat 2 28 0 5 1201 630 143 0 0 chr4 80863054 80863159 -74766961 + (TCCC)n Simple_repeat Simple_repeat 2 106 0 5 1201 254 283 0 0 chr4 80863424 80863484 -74766636 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 5 1201 196 303 11 43 chr4 80864874 80864967 -74765153 + MIRc SINE MIR 37 126 -142 5 1201 1340 244 259 19 chr4 80865047 80865381 -74764739 - RLTR40 LTR ERVK -11 806 386 5 1201 342 0 0 0 chr4 80865381 80865419 -74764701 + (TATG)n Simple_repeat Simple_repeat 4 41 0 5 1201 1340 244 259 19 chr4 80865419 80865734 -74764386 - RLTR40 LTR ERVK -432 385 2 5 1201 847 206 88 33 chr4 80865791 80865972 -74764148 + B3A SINE B2 8 198 0 5 1201 839 294 99 20 chr4 80866669 80866922 -74763198 - B4A SINE B4 -19 273 1 5 1201 463 250 0 0 chr4 80866922 80867021 -74763099 + RMER30 DNA MER1_type 104 202 0 5 1201 249 217 145 0 chr4 80867079 80867148 -74762972 + MER3 DNA MER1_type 70 148 -61 5 1201 252 362 9 9 chr4 80867292 80867398 -74762722 - MER5B DNA MER1_type -69 109 4 5 1201 217 333 80 0 chr4 80867740 80867815 -74762305 + L2c LINE L2 3273 3353 -34 5 1201 433 255 40 68 chr4 80869076 80869354 -74760766 - Lx9 LINE L1 -6 7638 7369 5 1201 232 339 45 18 chr4 80869380 80869491 -74760629 - MIRb SINE MIR -65 203 90 5 1201 4695 109 54 4 chr4 80869497 80870214 -74759906 - L1_Mus4 LINE L1 0 6636 5884 5 1201 4695 146 2 1 chr4 80870214 80871002 -74759118 + L1_Mus4 LINE L1 5095 5883 0 5 1202 644 210 21 0 chr4 80871557 80871700 -74758420 + B1_Mus2 SINE Alu 2 147 0 5 1202 1146 135 0 15 chr4 80871956 80872151 -74757969 + B2_Mm2 SINE B2 3 194 -1 5 1202 459 0 0 0 chr4 80872195 80872246 -74757874 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1202 227 246 0 30 chr4 80872910 80872977 -74757143 + L1M5 LINE L1 5007 5071 -1075 5 1202 24 32 0 0 chr4 80873106 80873137 -74756983 + AT_rich Low_complexity Low_complexity 1 31 0 5 1202 469 231 88 21 chr4 80873214 80873407 -74756713 + L1MD LINE L1 5369 5571 -762 5 1202 245 362 0 0 chr4 80873528 80873655 -74756465 - Lx9 LINE L1 -318 7326 7200 5 1202 444 322 57 9 chr4 80873655 80873884 -74756236 - Lx8 LINE L1 -539 6934 6695 5 1202 280 123 67 50 chr4 80873932 80873947 -74756173 + Lx3_Mus LINE L1 5793 5810 -828 5 1202 5497 78 57 4 chr4 80873947 80874703 -74755417 - Lx3_Mus LINE L1 -8 7001 6206 5 1202 404 58 1 1 chr4 80874703 80874757 -74755363 + Lx3_Mus LINE L1 5811 5863 -1146 5 1202 641 325 0 0 chr4 80874788 80874945 -74755175 + RSINE1 SINE B4 2 158 -7 5 1202 33789 44 1 3 chr4 80874947 80880016 -74750104 + L1Md_T LINE L1 432 5589 -297 5 1202 8366 37 1 0 chr4 80880016 80881011 -74749109 + L1Md_T LINE L1 5590 6585 0 5 1202 180 125 0 0 chr4 80881020 80881052 -74749068 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1202 1086 257 112 28 chr4 80881336 80881837 -74748283 + Lx8 LINE L1 6924 7466 -7 5 1202 3456 47 28 2 chr4 80883553 80883978 -74746142 - RLTR10C LTR ERVK 0 436 1 5 1202 963 194 39 0 chr4 80884071 80884251 -74745869 + URR1A DNA MER1_type 40 226 0 5 1202 871 259 66 0 chr4 80884374 80884571 -74745549 + B3 SINE B2 1 210 -6 5 1202 584 278 106 40 chr4 80885110 80885432 -74744688 + RLTR15 LTR ERVK 2 344 -15 5 1202 21 0 0 0 chr4 80885820 80885841 -74744279 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 303 60 0 0 chr4 80885922 80885972 -74744148 + BGLII_B LTR ERVK 1 50 -391 5 1202 487 281 168 5 chr4 80885975 80886172 -74743948 - MLT1B LTR MaLR -161 229 1 5 1202 793 246 179 68 chr4 80886462 80886802 -74743318 + MTE2b LTR MaLR 2 379 0 5 1202 2458 142 18 3 chr4 80887009 80887389 -74742731 + ORR1B1 LTR MaLR 1 386 -8 5 1202 4345 186 56 7 chr4 80887441 80888692 -74741428 + Lx3C LINE L1 5226 6535 -441 5 1202 508 189 82 63 chr4 80888683 80888841 -74741279 + Lx3C LINE L1 6816 6976 0 5 1202 473 318 144 33 chr4 80888866 80889386 -74740734 + L1ME1 LINE L1 2408 2985 -3161 5 1202 1669 295 86 38 chr4 80890209 80891437 -74738683 + L1_Mur3 LINE L1 3843 5130 -750 5 1202 471 263 24 18 chr4 80892002 80892125 -74737995 + PB1D10 SINE Alu 12 127 -22 5 1202 1068 184 3 89 chr4 80892188 80892480 -74737640 + RMER17C-int LTR ERVK 2261 2527 -711 5 1202 250 154 19 19 chr4 80892485 80892538 -74737582 - LSU-rRNA_Hsa rRNA rRNA -782 4253 4201 5 1202 1938 196 114 45 chr4 80892695 80893266 -74736854 + RMER17C-int LTR ERVK 2627 3236 -2 5 1202 651 26 0 0 chr4 80893402 80893479 -74736641 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1202 226 314 61 43 chr4 80893491 80893654 -74736466 + RMER17C LTR ERVK 181 346 -64 5 1202 320 245 214 7 chr4 80893683 80893790 -74736330 + B3 SINE B2 48 182 -34 5 1202 407 106 15 0 chr4 80893790 80893856 -74736264 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1202 320 245 214 7 chr4 80893856 80893888 -74736232 + B3 SINE B2 183 216 0 5 1202 505 318 142 40 chr4 80894132 80894633 -74735487 + L1ME1 LINE L1 5440 5991 -188 5 1202 256 317 75 69 chr4 80894736 80894909 -74735211 + B4A SINE B4 4 177 -115 5 1202 441 0 0 0 chr4 80894970 80895019 -74735101 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1202 203 195 24 0 chr4 80895177 80895218 -74734902 + GA-rich Low_complexity Low_complexity 2 43 0 5 1202 201 147 0 0 chr4 80895815 80895849 -74734271 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1202 1020 96 0 0 chr4 80897635 80897781 -74732339 + (GGAA)n Simple_repeat Simple_repeat 2 147 0 5 1202 189 0 0 0 chr4 80899409 80899430 -74730690 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1202 408 287 0 10 chr4 80899430 80899532 -74730588 - PB1D10 SINE Alu -15 102 2 5 1202 234 242 0 83 chr4 80899471 80899543 -74730577 - B4A SINE B4 -146 146 81 5 1202 741 114 0 0 chr4 80899685 80899799 -74730321 + (CA)n Simple_repeat Simple_repeat 2 115 0 5 1202 319 53 53 0 chr4 80900880 80900937 -74729183 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 5 1202 247 49 49 0 chr4 80901837 80901878 -74728242 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1202 612 0 0 0 chr4 80901879 80901947 -74728173 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1202 236 330 112 9 chr4 80902036 80902152 -74727968 - ORR1E LTR MaLR -226 133 6 5 1202 316 294 64 0 chr4 80902365 80902474 -74727646 - PB1 SINE Alu 0 127 12 5 1202 212 279 0 32 chr4 80902722 80902785 -74727335 + CT-rich Low_complexity Low_complexity 4 64 0 5 1202 292 189 36 0 chr4 80902931 80903042 -74727078 + (CAGA)n Simple_repeat Simple_repeat 2 116 0 5 1202 35143 71 8 17 chr4 80903286 80909508 -74720612 - L1Md_F2 LINE L1 -12 6570 416 5 1202 4353 20 2 0 chr4 80909923 80910415 -74719705 - MT2_Mm LTR ERVL 0 493 1 5 1202 6371 58 11 8 chr4 80911709 80912514 -74717606 + RLTR13C2 LTR ERVK 1 808 0 5 1202 371 73 18 0 chr4 80913703 80913758 -74716362 + (TCC)n Simple_repeat Simple_repeat 3 58 0 5 1202 592 212 159 0 chr4 80914837 80915007 -74715113 + B3A SINE B2 1 197 -1 5 1202 24 0 0 0 chr4 80915007 80915031 -74715089 + AT_rich Low_complexity Low_complexity 1 24 0 5 1202 799 319 38 24 chr4 80915604 80915973 -74714147 - BGLII_B LTR ERVK -18 423 50 6 1202 9719 32 0 2 chr4 80916029 80917242 -74712878 + L1_Mm LINE L1 4673 5883 0 6 1202 608 308 57 21 chr4 80919064 80919343 -74710777 - B4A SINE B4 -3 289 1 6 1202 309 312 42 26 chr4 80920518 80920599 -74709521 + MER113 DNA MER1_type 327 412 -109 6 1202 1900 140 108 53 chr4 80920599 80920905 -74709215 - MTC LTR MaLR 0 421 99 6 1202 1079 110 0 0 chr4 80920905 80921050 -74709070 - B1_Mm SINE Alu -2 145 1 6 1202 1900 140 108 53 chr4 80921050 80921142 -74708978 - MTC LTR MaLR -323 98 1 6 1202 309 312 42 26 chr4 80921142 80921251 -74708869 + MER113 DNA MER1_type 413 520 -1 6 1202 603 228 57 29 chr4 80921460 80921741 -74708379 + L1_Rod LINE L1 1141 1426 -4421 6 1202 182 238 9 38 chr4 80921760 80921865 -74708255 + GA-rich Low_complexity Low_complexity 3 104 0 6 1202 360 312 154 42 chr4 80923171 80923482 -74706638 - MLT1B LTR MaLR -2 388 43 6 1202 414 0 0 0 chr4 80923530 80923576 -74706544 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1202 486 0 0 0 chr4 80925908 80925962 -74704158 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1202 263 337 21 11 chr4 80929676 80929769 -74700351 + MER58A DNA MER1_type 1 94 -130 6 1202 29 90 0 0 chr4 80931156 80931234 -74698886 + AT_rich Low_complexity Low_complexity 1 78 0 6 1202 867 20 0 0 chr4 80932161 80932262 -74697858 + (GAGAA)n Simple_repeat Simple_repeat 3 103 0 6 1202 613 295 118 8 chr4 80932906 80933152 -74696968 - B4 SINE B4 -18 274 2 6 1202 566 238 40 24 chr4 80934567 80934692 -74695428 + B1F1 SINE Alu 14 140 -9 6 1202 216 0 0 0 chr4 80935030 80935054 -74695066 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1202 1253 166 5 9 chr4 80935303 80935522 -74694598 + URR1A DNA MER1_type 5 222 -4 6 1202 204 40 0 0 chr4 80937944 80937969 -74692151 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1202 561 283 0 0 chr4 80937977 80938097 -74692023 - B3A SINE B2 -76 122 3 6 1202 361 328 101 0 chr4 80941669 80941788 -74688332 - B4A SINE B4 -80 212 82 6 1202 279 0 0 0 chr4 80941872 80941903 -74688217 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 6 1202 544 262 53 64 chr4 80941905 80942076 -74688044 - B3A SINE B2 -15 183 15 6 1202 183 273 23 0 chr4 80942226 80942270 -74687850 - L3 LINE CR1 -2742 1747 1703 6 1202 1277 82 32 11 chr4 80942847 80943033 -74687087 + B2_Mm2 SINE B2 4 193 -2 6 1202 198 321 65 19 chr4 80944503 80944611 -74685509 - MIRb SINE MIR -52 216 104 6 1202 1422 251 35 0 chr4 80945450 80945769 -74684351 - MTD LTR MaLR -5 414 85 6 1202 441 225 109 0 chr4 80945801 80945939 -74684181 - MTC-int LTR MaLR 0 1258 1106 6 1202 444 189 62 9 chr4 80945950 80946062 -74684058 - RMER1A Other Other -84 946 829 6 1202 249 157 39 0 chr4 80946063 80946114 -74684006 + RMER1A Other Other 976 1028 -2 6 1202 1508 265 48 72 chr4 80946119 80946988 -74683132 - MTC-int LTR MaLR -195 1063 413 6 1202 1051 272 48 88 chr4 80947096 80947212 -74682908 + MTE2b LTR MaLR 9 110 -269 6 1202 225 0 0 0 chr4 80947212 80947237 -74682883 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1202 1051 272 48 88 chr4 80947237 80947471 -74682649 + MTE2b LTR MaLR 111 345 -34 6 1202 21 57 0 0 chr4 80947760 80947795 -74682325 + AT_rich Low_complexity Low_complexity 1 35 0 6 1202 273 246 174 0 chr4 80948171 80948240 -74681880 + Lx8 LINE L1 7237 7317 -156 6 1202 645 14 0 0 chr4 80948422 80948496 -74681624 + (GGAAA)n Simple_repeat Simple_repeat 2 75 0 6 1202 903 115 0 0 chr4 80948503 80948642 -74681478 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 6 1202 387 337 43 16 chr4 80949263 80949447 -74680673 - MER5A DNA MER1_type 0 189 1 6 1202 2052 280 30 45 chr4 80951051 80951676 -74678444 + RLTR18 LTR ERVK 1 616 0 6 1202 2234 76 106 6 chr4 80952058 80952388 -74677732 + L1Md_F2 LINE L1 6146 6508 -74 6 1202 432 138 0 0 chr4 80952531 80952611 -74677509 + L1Md_F2 LINE L1 6503 6582 0 6 1202 861 257 14 24 chr4 80955285 80955496 -74674624 + B3 SINE B2 8 216 0 6 1202 361 333 43 43 chr4 80956602 80956765 -74673355 + RSINE1 SINE B4 3 165 0 6 1202 180 307 31 93 chr4 80957209 80957306 -74672814 - MIR3 SINE MIR -15 193 103 6 1202 407 343 51 0 chr4 80957385 80957522 -74672598 - RSINE1 SINE B4 -15 150 7 6 1202 312 27 0 0 chr4 80959016 80959053 -74671067 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1202 1056 98 7 14 chr4 80959650 80959795 -74670325 - B1_Mus1 SINE Alu 0 148 5 6 1202 230 329 82 0 chr4 80962797 80962882 -74667238 - PB1D10 SINE Alu -17 100 9 6 1202 23 86 0 0 chr4 80964693 80964751 -74665369 + AT_rich Low_complexity Low_complexity 1 58 0 6 1202 1715 189 140 3 chr4 80966523 80966874 -74663246 - MTC LTR MaLR -20 401 3 6 1202 320 259 49 56 chr4 80966962 80967105 -74663015 + L1MB2 LINE L1 5191 5332 -808 6 1202 521 262 207 22 chr4 80967129 80967453 -74662667 + L1MB2 LINE L1 5386 5769 -402 6 1202 477 309 49 51 chr4 80967454 80967733 -74662387 + B4 SINE B4 2 288 -4 6 1202 409 327 59 23 chr4 80967796 80968103 -74662017 + L1MB2 LINE L1 5802 6119 -52 6 1202 226 282 38 13 chr4 80968651 80968730 -74661390 + ID SINE ID 1 81 -143 6 1202 236 227 29 43 chr4 80969264 80969333 -74660787 - B3 SINE B2 -36 180 113 6 1202 198 0 0 0 chr4 80969607 80969629 -74660491 + (TAA)n Simple_repeat Simple_repeat 2 23 0 6 1202 252 351 86 16 chr4 80969906 80970115 -74660005 + MIR SINE MIR 10 223 -45 6 1202 465 248 39 133 chr4 80970669 80970850 -74659270 - RSINE1 SINE B4 0 165 2 6 1202 24 53 0 0 chr4 80971744 80971782 -74658338 + AT_rich Low_complexity Low_complexity 1 38 0 6 1202 222 136 0 0 chr4 80972226 80972270 -74657850 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1202 309 219 31 0 chr4 80972584 80972712 -74657408 + CT-rich Low_complexity Low_complexity 6 137 0 6 1202 236 146 0 35 chr4 80976764 80976821 -74653299 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 6 1202 198 171 0 0 chr4 80976895 80976936 -74653184 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 6 1202 187 371 29 0 chr4 80977149 80977219 -74652901 - L2a LINE L2 -9 3417 3346 6 1202 237 65 0 0 chr4 80977838 80977869 -74652251 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1202 28 61 0 0 chr4 80977943 80977992 -74652128 + AT_rich Low_complexity Low_complexity 1 49 0 6 1202 191 305 0 17 chr4 80979905 80979965 -74650155 - L3 LINE CR1 -3591 898 840 6 1202 347 289 55 73 chr4 80981943 80982107 -74648013 - RSINE1 SINE B4 -2 163 3 6 1202 412 239 70 28 chr4 80982284 80982460 -74647660 + B3 SINE B2 3 191 -4 6 1202 534 304 81 59 chr4 80983072 80983345 -74646775 - B4 SINE B4 -13 279 1 6 1202 250 381 77 29 chr4 80983377 80983623 -74646497 + L2 LINE L2 2592 2849 -570 6 1202 22 0 0 0 chr4 80983946 80983968 -74646152 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 275 196 0 18 chr4 80984011 80984068 -74646052 - RMER1A Other Other -10 1020 965 6 1202 206 206 14 0 chr4 80984397 80984470 -74645650 + (TTG)n Simple_repeat Simple_repeat 2 75 0 6 1202 458 273 36 26 chr4 80984471 80984612 -74645508 - B1F2 SINE Alu -16 133 3 6 1202 743 188 21 14 chr4 80984633 80984773 -74645347 - B1_Mus1 SINE Alu -7 141 1 6 1202 374 267 50 64 chr4 80984789 80984929 -74645191 - B1F SINE Alu 0 149 12 6 1202 24 67 0 0 chr4 80984971 80985016 -74645104 + AT_rich Low_complexity Low_complexity 1 45 0 6 1202 414 0 0 0 chr4 80985158 80985202 -74644918 - L1Md_T LINE L1 -1365 4518 4475 6 1202 9120 30 7 0 chr4 80985201 80986260 -74643860 + L1Md_T LINE L1 4521 5586 -297 6 1202 8957 31 1 4 chr4 80986261 80987258 -74642862 + L1Md_T LINE L1 5588 6581 -1 6 1202 2517 27 24 0 chr4 80987272 80987564 -74642556 + L1Md_F2 LINE L1 5288 5586 -297 6 1202 8985 25 1 1 chr4 80987565 80988544 -74641576 + L1Md_F2 LINE L1 5588 6566 -16 6 1202 1548 279 68 43 chr4 80988550 80989334 -74640786 + L1_Mur3 LINE L1 1672 2474 -3406 6 1202 3167 263 143 10 chr4 80989431 80990441 -74639679 + Lx8 LINE L1 6184 7327 -146 6 1202 318 106 0 0 chr4 80990635 80990682 -74639438 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 6 1202 531 286 71 0 chr4 80990691 80990817 -74639303 + B1F SINE Alu 9 143 -6 6 1202 225 217 0 0 chr4 80991246 80991292 -74638828 + PB1 SINE Alu 78 123 -4 6 1202 25 0 0 0 chr4 80992093 80992118 -74638002 + AT_rich Low_complexity Low_complexity 1 25 0 6 1202 504 266 122 5 chr4 80992221 80992410 -74637710 + L1MB3 LINE L1 5731 5941 -242 6 1202 1606 194 25 57 chr4 80993188 80993554 -74636566 - ORR1B1 LTR MaLR 0 394 41 6 1202 237 359 0 0 chr4 80995971 80996049 -74634071 - ID4_ SINE ID -1 82 5 6 1202 212 238 86 120 chr4 80996347 80996566 -74633554 + MIRc SINE MIR 24 247 -21 6 1202 316 117 13 13 chr4 80997646 80997724 -74632396 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 6 1202 1197 88 0 26 chr4 80997730 80997881 -74632239 - B1_Mus2 SINE Alu 0 147 1 6 1202 753 152 0 0 chr4 80997979 80998117 -74632003 + (TA)n Simple_repeat Simple_repeat 1 138 0 6 1202 279 0 0 0 chr4 80998117 80998148 -74631972 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1202 1234 68 0 7 chr4 80998151 80998298 -74631822 - B1_Mm SINE Alu -1 146 1 6 1202 474 145 150 120 chr4 80999231 80999364 -74630756 + B1_Mur2 SINE Alu 3 139 -10 6 1202 1768 175 23 83 chr4 81001749 81002147 -74627973 + ORR1D1 LTR MaLR 1 374 0 1 1203 1719 10 0 0 chr4 81003021 81003219 -74626901 + L1Md_A LINE L1 6385 6582 0 2 1203 447 358 0 0 chr4 81003723 81003902 -74626218 + G-rich Low_complexity Low_complexity 1 179 0 3 1203 610 289 0 0 chr4 81003828 81004001 -74626119 + (CAGG)n Simple_repeat Simple_repeat 3 175 0 4 1203 245 215 24 48 chr4 81004006 81004089 -74626031 + PB1D9 SINE Alu 40 120 0 5 1203 628 79 78 9 chr4 81006404 81006519 -74623601 + L1Md_F2 LINE L1 6448 6570 -12 6 1203 229 358 51 57 chr4 81008626 81008801 -74621319 - MIR SINE MIR -57 205 32 7 1203 396 333 15 15 chr4 81011290 81011421 -74618699 + ID_B1 SINE B4 84 214 -10 8 1203 312 120 0 0 chr4 81012254 81012304 -74617816 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1203 180 111 0 0 chr4 81012371 81012398 -74617722 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1203 207 0 0 0 chr4 81013023 81013046 -74617074 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1203 226 278 43 22 chr4 81013973 81014065 -74616055 + PB1 SINE Alu 30 123 -4 1 1203 477 62 0 0 chr4 81014281 81014346 -74615774 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1203 29 84 0 0 chr4 81014662 81014733 -74615387 + AT_rich Low_complexity Low_complexity 1 71 0 1 1203 198 0 0 0 chr4 81015159 81015181 -74614939 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1203 360 311 0 11 chr4 81016657 81016748 -74613372 + B4 SINE B4 3 92 -200 1 1203 504 336 29 0 chr4 81016749 81016889 -74613231 + RSINE1 SINE B4 1 144 -21 1 1203 221 229 0 0 chr4 81017013 81017061 -74613059 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1203 336 24 0 0 chr4 81017134 81017175 -74612945 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1203 446 228 56 112 chr4 81017177 81017320 -74612800 - B3A SINE B2 -48 150 16 2 1203 283 198 34 0 chr4 81017340 81017407 -74612713 - B1_Mur2 SINE Alu -31 119 45 2 1203 408 275 49 14 chr4 81017568 81017712 -74612408 + B1F1 SINE Alu 1 149 0 2 1203 27 0 0 0 chr4 81017907 81017934 -74612186 + AT_rich Low_complexity Low_complexity 1 27 0 2 1203 745 266 103 12 chr4 81019513 81019833 -74610287 + Lx9 LINE L1 7259 7607 -37 2 1203 268 228 99 40 chr4 81019950 81020101 -74610019 + L1MB8 LINE L1 5809 5968 -210 2 1203 245 291 44 15 chr4 81020148 81020284 -74609836 + L1MB8 LINE L1 6043 6182 -2 2 1203 1203 232 116 16 chr4 81020339 81020659 -74609461 + MTB_Mm LTR MaLR 1 352 -55 2 1203 758 61 10 0 chr4 81021013 81021112 -74609008 + B1_Mus2 SINE Alu 35 134 -13 2 1203 431 18 0 18 chr4 81021112 81021169 -74608951 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 2 1203 397 115 0 16 chr4 81021276 81021338 -74608782 + MTB_Mm LTR MaLR 359 419 0 2 1203 263 194 29 15 chr4 81021880 81021948 -74608172 - L1M3 LINE L1 -282 5889 5821 2 1203 236 275 52 52 chr4 81022163 81022278 -74607842 + MER103 DNA DNA 30 144 -22 3 1203 615 287 13 7 chr4 81022790 81022941 -74607179 + B4A SINE B4 1 152 -140 3 1203 265 246 302 8 chr4 81023050 81023169 -74606951 + B4A SINE B4 132 285 -7 3 1203 402 21 0 0 chr4 81023192 81023239 -74606881 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1203 854 273 24 28 chr4 81023297 81023587 -74606533 + B4A SINE B4 4 292 0 3 1203 300 27 0 0 chr4 81023615 81023652 -74606468 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 3 1203 366 350 10 0 chr4 81023711 81023808 -74606312 - B3A SINE B2 -100 98 1 3 1203 2741 158 117 27 chr4 81026911 81027543 -74602577 + RMER6C LTR ERVK 1 689 -1 3 1203 257 348 52 9 chr4 81028331 81028447 -74601673 + Charlie5 DNA MER1_type 1 121 -2503 3 1203 1184 94 56 0 chr4 81030261 81030441 -74599679 + B2_Mm2 SINE B2 5 194 -1 3 1203 790 314 35 19 chr4 81030618 81030878 -74599242 - B4A SINE B4 0 292 29 3 1203 256 277 22 78 chr4 81031255 81031345 -74598775 + PB1D10 SINE Alu 10 94 -23 4 1203 462 153 0 0 chr4 81031528 81031606 -74598514 + Lx9 LINE L1 7399 7476 -168 4 1203 405 102 0 0 chr4 81031606 81031665 -74598455 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1203 26 0 0 0 chr4 81031671 81031697 -74598423 + GC_rich Low_complexity Low_complexity 1 26 0 4 1203 24 53 0 0 chr4 81031974 81032012 -74598108 + AT_rich Low_complexity Low_complexity 1 38 0 4 1203 1028 278 69 49 chr4 81033071 81033486 -74596634 - MTD LTR MaLR -17 402 1 4 1203 239 350 24 49 chr4 81033550 81033673 -74596447 + L2a LINE L2 3302 3421 -5 4 1203 216 0 0 0 chr4 81034127 81034151 -74595969 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1203 489 56 0 14 chr4 81034646 81034719 -74595401 + RMER17C-int LTR ERVK 2789 2860 -378 4 1203 378 0 0 0 chr4 81034719 81034761 -74595359 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1203 1310 116 169 26 chr4 81034761 81035027 -74595093 + RMER17C-int LTR ERVK 2900 3203 -35 4 1203 1371 204 42 75 chr4 81035279 81035703 -74594417 + RMER17C LTR ERVK 1 410 0 4 1203 314 370 65 47 chr4 81036191 81036469 -74593651 + L1MEg LINE L1 1497 1779 -4305 5 1203 319 298 116 26 chr4 81036492 81036647 -74593473 + L1M5 LINE L1 5294 5462 -717 5 1203 277 320 79 40 chr4 81036789 81036890 -74593230 + PB1D10 SINE Alu 13 117 0 5 1203 611 306 152 10 chr4 81037206 81037768 -74592352 + L1_Mur3 LINE L1 4356 4972 -908 5 1203 244 173 72 24 chr4 81038112 81038195 -74591925 + L1M5 LINE L1 5024 5110 -1036 5 1203 22 0 0 0 chr4 81039127 81039149 -74590971 + AT_rich Low_complexity Low_complexity 1 22 0 5 1203 577 233 102 70 chr4 81039434 81039591 -74590529 + RSINE1 SINE B4 2 163 -2 5 1203 23 0 0 0 chr4 81039641 81039664 -74590456 + AT_rich Low_complexity Low_complexity 1 23 0 5 1203 1182 304 81 81 chr4 81040215 81040769 -74589351 + Charlie1a DNA MER1_type 414 986 -469 5 1203 659 236 28 22 chr4 81040769 81040951 -74589169 + B3A SINE B2 1 183 -15 5 1203 1182 304 81 81 chr4 81040951 81041138 -74588982 + Charlie1a DNA MER1_type 987 1155 -300 5 1203 207 100 0 0 chr4 81041263 81041293 -74588827 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1203 34 65 0 0 chr4 81041376 81041438 -74588682 + AT_rich Low_complexity Low_complexity 1 62 0 6 1203 21 57 0 0 chr4 81041475 81041510 -74588610 + AT_rich Low_complexity Low_complexity 1 35 0 6 1203 456 291 52 131 chr4 81041512 81041741 -74588379 - B3A SINE B2 0 216 6 6 1203 222 128 0 0 chr4 81041959 81041998 -74588122 + (TGG)n Simple_repeat Simple_repeat 1 39 0 6 1203 195 69 0 0 chr4 81042010 81042039 -74588081 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1203 576 224 0 0 chr4 81042412 81042633 -74587487 + (ATG)n Simple_repeat Simple_repeat 1 221 0 6 1203 219 269 93 25 chr4 81043591 81043709 -74586411 + MIRb SINE MIR 31 156 -112 6 1203 513 270 58 29 chr4 81043827 81044033 -74586087 - B3 SINE B2 0 216 5 6 1203 240 59 0 0 chr4 81044060 81044094 -74586026 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1203 3826 45 0 4 chr4 81044198 81044664 -74585456 + L1Md_F2 LINE L1 6107 6570 -12 7 1203 25 0 0 0 chr4 81044901 81044926 -74585194 + AT_rich Low_complexity Low_complexity 1 25 0 7 1203 531 319 7 41 chr4 81045393 81045540 -74584580 + RSINE1 SINE B4 5 146 -19 7 1203 225 0 0 0 chr4 81045546 81045571 -74584549 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1203 735 62 0 0 chr4 81045594 81045691 -74584429 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 1203 807 221 9 26 chr4 81045717 81045949 -74584171 + L1VL1 LINE L1 72 299 -6123 7 1203 393 234 0 0 chr4 81045940 81046034 -74584086 + L1Md_F LINE L1 235 328 -6191 7 1203 555 225 0 0 chr4 81046031 81046151 -74583969 + L1Md_F3 LINE L1 306 425 -6191 7 1203 35626 47 1 6 chr4 81046191 81051324 -74578796 + L1Md_F3 LINE L1 928 6022 -562 7 1203 6824 66 0 18 chr4 81051321 81052289 -74577831 + L1Md_Gf LINE L1 192 1142 -5380 7 1203 11605 15 1 0 chr4 81055333 81056638 -74573482 + L1Md_T LINE L1 4281 5586 -297 7 1203 8602 33 0 0 chr4 81056638 81057634 -74572486 + L1Md_T LINE L1 5587 6582 0 7 1203 4678 39 18 2 chr4 81057643 81058214 -74571906 + L1Md_F3 LINE L1 6005 6584 0 7 1203 267 350 10 39 chr4 81058241 81058345 -74571775 + RSINE1 SINE B4 54 154 -11 8 1203 364 340 56 64 chr4 81058441 81058674 -74571446 - B4A SINE B4 -60 232 2 8 1203 468 0 0 0 chr4 81058986 81059038 -74571082 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1203 637 269 134 17 chr4 81059041 81059068 -74571052 - L1_Mur3 LINE L1 -1648 4232 4205 8 1203 1178 109 170 10 chr4 81059068 81059262 -74570858 + URR1B DNA MER1_type 1 225 0 8 1203 637 269 134 17 chr4 81059262 81059533 -74570587 - L1_Mur3 LINE L1 -1676 4204 3899 8 1203 273 333 52 57 chr4 81059555 81059749 -74570371 - MER20 DNA MER1_type 0 219 27 8 1203 756 147 7 13 chr4 81060482 81060634 -74569486 + (CATA)n Simple_repeat Simple_repeat 2 152 0 8 1203 26 0 0 0 chr4 81060953 81060979 -74569141 + AT_rich Low_complexity Low_complexity 1 26 0 8 1203 21 82 0 0 chr4 81062013 81062062 -74568058 + AT_rich Low_complexity Low_complexity 1 49 0 8 1203 21 0 0 0 chr4 81062427 81062448 -74567672 + AT_rich Low_complexity Low_complexity 1 21 0 8 1203 1680 31 0 0 chr4 81067201 81067394 -74562726 + B2_Mm1a SINE B2 1 193 0 9 1203 200 278 122 0 chr4 81067676 81067766 -74562354 - MIR SINE MIR -132 130 30 9 1203 1285 251 87 11 chr4 81067884 81068254 -74561866 - MTD LTR MaLR -14 405 8 9 1203 1289 82 27 21 chr4 81068561 81068749 -74561371 + B2_Mm2 SINE B2 2 190 -5 9 1203 274 273 173 0 chr4 81069662 81069772 -74560348 - B1F SINE Alu -7 142 14 9 1203 483 18 0 0 chr4 81070169 81070225 -74559895 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1203 1089 246 123 32 chr4 81070700 81071060 -74559060 - MTD LTR MaLR -20 399 20 9 1203 1089 60 0 13 chr4 81072481 81072634 -74557486 - B2_Mm2 SINE B2 -43 152 2 9 1203 240 270 32 53 chr4 81072892 81072986 -74557134 + MLT1A LTR MaLR 274 365 -9 9 1203 1548 47 0 25 chr4 81073134 81073331 -74556789 + B2_Mm1a SINE B2 2 193 0 9 1203 3482 53 16 0 chr4 81073734 81074170 -74555950 - Lx LINE L1 -625 6029 5587 1 1203 4242 96 38 0 chr4 81074204 81074807 -74555313 + Lx LINE L1 6027 6652 -2 1 1203 678 200 14 20 chr4 81077535 81077683 -74552437 + B1_Mur3 SINE Alu 2 148 -1 1 1203 438 301 74 50 chr4 81078543 81078826 -74551294 - B4A SINE B4 0 292 3 1 1203 2268 36 18 0 chr4 81078836 81079114 -74551006 - L1Md_F3 LINE L1 0 6584 6302 1 1203 577 299 15 50 chr4 81079750 81079951 -74550169 - MTE2a LTR MaLR -2 377 184 1 1203 4735 68 0 0 chr4 81080622 81081214 -74548906 + L1_Mus3 LINE L1 5726 6317 -321 1 1203 210 276 194 0 chr4 81081293 81081391 -74548729 + PB1D10 SINE Alu 1 117 0 1 1203 457 309 46 28 chr4 81081506 81081789 -74548331 + MER33 DNA MER1_type 3 290 -34 1 1203 732 238 6 6 chr4 81081792 81081961 -74548159 + B3A SINE B2 11 179 -19 1 1203 336 83 0 0 chr4 81081964 81082012 -74548108 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1203 22 56 0 0 chr4 81082336 81082372 -74547748 + AT_rich Low_complexity Low_complexity 1 36 0 1 1203 402 74 0 0 chr4 81082720 81082774 -74547346 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1203 321 68 0 0 chr4 81082855 81082899 -74547221 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1203 277 315 13 46 chr4 81082927 81083080 -74547040 + MER34A LTR ERV1 424 571 0 1 1203 549 314 85 37 chr4 81083698 81083969 -74546151 - B4A SINE B4 0 292 9 1 1203 201 162 0 0 chr4 81084045 81084082 -74546038 + CT-rich Low_complexity Low_complexity 2 38 0 1 1203 378 0 0 0 chr4 81084082 81084124 -74545996 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1203 339 141 0 0 chr4 81084279 81084343 -74545777 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1203 861 112 0 33 chr4 81084366 81084550 -74545570 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1203 21 71 0 0 chr4 81084643 81084685 -74545435 + AT_rich Low_complexity Low_complexity 1 42 0 1 1203 514 313 0 13 chr4 81084980 81085129 -74544991 + ID_B1 SINE B4 78 224 0 1 1203 523 249 116 40 chr4 81085562 81085813 -74544307 + MLT1B LTR MaLR 20 289 -101 1 1203 324 293 37 8 chr4 81085933 81086067 -74544053 + MLT1B-int LTR MaLR 55 192 -1179 1 1203 3035 61 18 13 chr4 81090037 81090435 -74539685 + MTB LTR MaLR 1 400 0 1 1203 220 269 75 0 chr4 81090978 81091045 -74539075 + MER5A DNA MER1_type 2 73 -116 1 1203 478 298 92 18 chr4 81091149 81091313 -74538807 + B3A SINE B2 1 176 -22 1 1203 333 47 0 0 chr4 81091319 81091362 -74538758 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1203 1885 314 85 21 chr4 81091719 81092222 -74537898 - Lx8 LINE L1 -440 7033 6515 1 1203 207 0 0 0 chr4 81092222 81092245 -74537875 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1203 1885 314 85 21 chr4 81092245 81092609 -74537511 - Lx8 LINE L1 -959 6514 6110 1 1203 805 263 43 26 chr4 81092768 81093002 -74537118 - ORR1D2 LTR MaLR -6 364 127 1 1203 1084 242 21 21 chr4 81093037 81093371 -74536749 - Lx7 LINE L1 -1672 5972 5638 1 1203 866 276 29 26 chr4 81093368 81093680 -74536440 + Lx7 LINE L1 5247 5559 -321 1 1203 428 257 93 66 chr4 81093682 81093865 -74536255 + B3A SINE B2 2 189 -9 1 1203 1509 68 5 0 chr4 81093982 81094174 -74535946 - B2_Mm1a SINE B2 0 193 1 1 1203 817 56 23 23 chr4 81094965 81095093 -74535027 - L1_Mus3 LINE L1 -6 6632 6505 1 1203 4184 159 75 18 chr4 81095093 81095917 -74534203 - RMER19B LTR ERVK -31 871 1 1 1203 515 292 14 7 chr4 81095922 81096067 -74534053 + B3 SINE B2 1 146 -70 1 1203 1249 95 55 10 chr4 81096268 81096470 -74533650 + L1Md_A LINE L1 6371 6581 -1 1 1203 357 290 222 9 chr4 81097019 81097231 -74532889 + RMER15 LTR ERVL 273 529 -46 1 1203 243 0 0 0 chr4 81097492 81097519 -74532601 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1203 279 0 0 0 chr4 81097520 81097551 -74532569 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1203 378 218 79 0 chr4 81097861 81097976 -74532144 + PB1D10 SINE Alu 6 131 -18 1 1203 272 328 65 21 chr4 81098134 81098417 -74531703 + L2a LINE L2 3021 3340 -86 1 1203 869 43 17 0 chr4 81098474 81098591 -74531529 + (TCTCCC)n Simple_repeat Simple_repeat 3 121 0 1 1203 300 137 0 0 chr4 81099478 81099529 -74530591 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 1 1203 245 311 14 0 chr4 81099565 81099639 -74530481 - ID_B1 SINE B4 -63 161 87 1 1203 526 297 54 86 chr4 81100834 81101276 -74528844 + RMER10A LTR ERVL 12 439 -3 1 1203 355 241 24 0 chr4 81101352 81101435 -74528685 - B3A SINE B2 -83 115 31 1 1203 360 0 0 0 chr4 81101746 81101786 -74528334 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1203 3310 33 10 2 chr4 81101948 81102341 -74527779 - MTA_Mm LTR MaLR 0 396 1 1 1203 697 57 105 0 chr4 81102771 81102876 -74527244 + LTRIS5 LTR ERV1 1 116 -331 1 1203 1111 146 22 26 chr4 81102901 81103133 -74526987 + LTRIS5 LTR ERV1 217 447 0 1 1203 258 186 31 110 chr4 81103133 81103260 -74526860 + MuRRS4-int LTR ERV1 1 117 -3581 1 1203 186 43 0 0 chr4 81103872 81103895 -74526225 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1203 303 158 140 0 chr4 81103895 81103952 -74526168 + RMER16-int LTR ERVK 180 244 -5162 1 1203 795 110 195 21 chr4 81103963 81104193 -74525927 + RMER16-int LTR ERVK 1103 1372 -4034 1 1203 226 224 50 33 chr4 81104194 81104254 -74525866 + MTC-int LTR MaLR 915 975 -283 1 1203 853 270 67 8 chr4 81104288 81104542 -74525578 + MuRRS4-int LTR ERV1 1176 1444 -3619 1 1203 1743 102 114 114 chr4 81104598 81104965 -74525155 + RLTR1B-int LTR ERV1 1248 1614 -1685 1 1203 875 69 95 0 chr4 81104951 81105067 -74525053 + RLTR1B-int LTR ERV1 2349 2475 -2588 1 1203 1212 89 0 0 chr4 81105064 81105222 -74524898 + RLTR1B-int LTR ERV1 2728 2885 -2178 1 1203 3334 117 15 27 chr4 81105222 81105809 -74524311 + ORR1A3-int LTR MaLR 942 1521 -442 1 1203 1571 279 47 30 chr4 81105812 81106344 -74523776 + RLTR1B-int LTR ERV1 3725 4265 -798 1 1203 293 95 0 0 chr4 81106371 81106413 -74523707 + RLTR6-int LTR ERV1 7737 7778 0 1 1203 909 118 74 24 chr4 81106413 81106715 -74523405 + LTRIS5 LTR ERV1 1 427 -85 1 1203 1067 51 66 0 chr4 81106715 81106852 -74523268 + B1_Mus2 SINE Alu 1 146 -1 1 1203 696 149 69 160 chr4 81106852 81106952 -74523168 + LTRIS5 LTR ERV1 428 511 -1 1 1203 1426 211 74 0 chr4 81107704 81108016 -74522104 + RMER1B Other Other 723 1057 -9 1 1203 289 253 24 0 chr4 81109124 81109207 -74520913 + B4A SINE B4 207 291 -1 1 1203 208 147 0 0 chr4 81109336 81109370 -74520750 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1203 359 138 0 0 chr4 81109568 81109626 -74520494 + B3 SINE B2 10 67 -149 1 1203 465 331 6 12 chr4 81109761 81109926 -74520194 + RSINE1 SINE B4 2 165 0 1 1203 1247 21 0 0 chr4 81110665 81110807 -74519313 + B1_Mus2 SINE Alu 1 142 -5 1 1203 1780 223 161 41 chr4 81111274 81111839 -74518281 - RMER13B LTR ERVK -4 904 272 1 1203 1105 248 62 69 chr4 81111872 81112353 -74517767 - RMER17A2 LTR ERVK -417 489 12 1 1203 1258 192 41 45 chr4 81113123 81113477 -74516643 + Lx LINE L1 6237 6654 0 1 1203 423 132 0 0 chr4 81113479 81113547 -74516573 + (GAAAA)n Simple_repeat Simple_repeat 3 70 0 1 1203 303 121 0 0 chr4 81114812 81114870 -74515250 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1203 342 0 0 0 chr4 81114880 81114918 -74515202 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 1203 766 212 7 7 chr4 81114918 81115055 -74515065 - B1_Mur2 SINE Alu -10 139 2 1 1203 2826 237 53 49 chr4 81115339 81116392 -74513728 + L1_Mur3 LINE L1 352 1401 -4479 1 1203 2808 76 14 62 chr4 81116392 81116812 -74513308 - MTB LTR MaLR 0 400 1 1 1203 725 185 52 61 chr4 81116812 81116843 -74513277 + L1_Mur3 LINE L1 1402 1431 -4449 1 1203 1099 17 0 82 chr4 81116888 81117082 -74513038 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 1 1203 666 128 0 60 chr4 81117082 81117239 -74512881 + G-rich Low_complexity Low_complexity 9 155 0 1 1203 1304 11 17 28 chr4 81117244 81117423 -74512697 + (GGGAA)n Simple_repeat Simple_repeat 1 177 0 1 1203 237 152 16 33 chr4 81117426 81117487 -74512633 + L1_Mur3 LINE L1 1427 1486 -4394 1 1203 201 74 0 0 chr4 81117696 81117723 -74512397 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1203 1343 187 207 11 chr4 81118287 81118639 -74511481 - MTC LTR MaLR 0 421 1 1 1203 276 258 128 32 chr4 81119241 81119397 -74510723 + RMER10A LTR ERVL 259 429 -13 1 1203 269 382 70 49 chr4 81119447 81119590 -74510530 - LTR41 LTR ERVL -199 569 424 1 1203 1247 152 9 14 chr4 81119644 81119857 -74510263 - URR1A DNA MER1_type -13 213 2 1 1203 493 266 15 30 chr4 81119860 81119992 -74510128 - LTR41 LTR ERVL -614 154 25 1 1203 730 226 150 19 chr4 81120266 81120573 -74509547 + L1MA8 LINE L1 5381 5727 -585 1 1203 235 433 0 0 chr4 81120847 81121025 -74509095 - Lx8 LINE L1 -254 7219 7042 1 1203 262 229 115 0 chr4 81121034 81121130 -74508990 + L1MA8 LINE L1 5724 5830 -482 1 1203 3833 173 7 14 chr4 81121127 81121890 -74508230 - L1_Mur2 LINE L1 -181 5696 4940 1 1203 234 263 171 0 chr4 81121891 81122043 -74508077 + L1MA8 LINE L1 6109 6286 -5 1 1203 230 322 43 71 chr4 81122491 81122675 -74507445 - B3A SINE B2 -10 188 10 1 1203 470 294 38 32 chr4 81122523 81122681 -74507439 - RSINE1 SINE B4 -2 163 5 1 1203 207 189 0 0 chr4 81122694 81122731 -74507389 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 1 1203 587 282 124 12 chr4 81122892 81123150 -74506970 + B4 SINE B4 2 288 -4 1 1203 311 254 22 122 chr4 81123530 81123669 -74506451 - B3 SINE B2 -5 211 87 1 1203 21 0 0 0 chr4 81123733 81123754 -74506366 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 429 227 0 60 chr4 81123870 81123987 -74506133 + B4A SINE B4 183 292 0 1 1203 429 333 91 21 chr4 81123944 81124186 -74505934 - B4A SINE B4 -29 263 5 1 1203 287 327 0 2 chr4 81124231 81124343 -74505777 + L1M2 LINE L1 5695 5804 -487 1 1203 1049 302 82 26 chr4 81124350 81124601 -74505519 + L1MA4 LINE L1 4057 4324 -1819 1 1203 1442 75 0 5 chr4 81124601 81124788 -74505332 + B2_Mm2 SINE B2 2 187 -8 1 1203 1049 302 82 26 chr4 81124788 81125270 -74504850 + L1MA4 LINE L1 4325 4831 -1312 1 1203 559 333 20 0 chr4 81125375 81125528 -74504592 + RSINE1 SINE B4 2 157 -8 1 1203 207 0 0 0 chr4 81125532 81125555 -74504565 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1203 374 304 22 7 chr4 81125643 81125850 -74504270 + L1MA4 LINE L1 5299 5515 -782 1 1203 301 296 180 57 chr4 81125852 81125886 -74504234 - B4A SINE B4 -7 285 246 1 1203 315 246 14 0 chr4 81125886 81125955 -74504165 - ID4_ SINE ID -10 73 4 1 1203 311 296 180 57 chr4 81125955 81125968 -74504152 - ID_B1 SINE B4 -47 245 199 1 1203 349 325 0 24 chr4 81125968 81126094 -74504026 - PB1 SINE Alu -3 124 2 1 1203 311 296 180 57 chr4 81126094 81126131 -74503989 - ID_B1 SINE B4 -47 198 49 1 1203 922 217 148 64 chr4 81126186 81126531 -74503589 + ORR1D1 LTR MaLR 1 374 0 1 1203 366 265 82 69 chr4 81126600 81126831 -74503289 + L1MA4 LINE L1 5678 5911 -389 1 1203 198 0 0 0 chr4 81127055 81127077 -74503043 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1203 32 43 0 0 chr4 81130121 81130167 -74499953 + AT_rich Low_complexity Low_complexity 1 46 0 2 1203 27 0 0 0 chr4 81130935 81130962 -74499158 + AT_rich Low_complexity Low_complexity 1 27 0 2 1203 1609 215 29 56 chr4 81131180 81131496 -74498624 + ORR1D1 LTR MaLR 11 319 -55 2 1203 712 103 0 8 chr4 81131496 81131614 -74498506 - Lx LINE L1 -2 6652 6536 2 1203 1609 215 29 56 chr4 81131614 81131671 -74498449 + ORR1D1 LTR MaLR 320 374 0 2 1203 763 259 6 0 chr4 81131871 81132041 -74498079 - B3 SINE B2 -5 211 41 2 1203 1023 104 24 12 chr4 81132129 81132294 -74497826 + URR1A DNA MER1_type 59 225 -1 2 1203 643 283 67 0 chr4 81132744 81132924 -74497196 + B3A SINE B2 1 192 -6 2 1203 828 266 52 91 chr4 81133219 81133511 -74496609 - B4A SINE B4 -2 290 1 2 1204 405 0 0 0 chr4 81133918 81133963 -74496157 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1204 677 311 12 12 chr4 81134577 81134740 -74495380 - B3A SINE B2 -35 163 1 2 1204 6054 60 12 6 chr4 81134713 81135516 -74494604 - RLTR13C2 LTR ERVK 0 808 1 2 1204 1425 262 56 34 chr4 81135833 81136334 -74493786 - Lx9 LINE L1 -171 7473 6962 2 1204 1827 287 85 40 chr4 81136334 81137740 -74492380 + Lx9 LINE L1 5286 6882 -762 2 1204 567 340 0 26 chr4 81137834 81137985 -74492135 - RSINE1 SINE B4 -2 163 17 2 1204 245 302 0 0 chr4 81138079 81138132 -74491988 - RSINE1 SINE B4 -4 161 109 2 1204 424 352 106 45 chr4 81138104 81138369 -74491751 - B4A SINE B4 -11 281 1 2 1204 287 289 93 0 chr4 81140258 81140355 -74489765 - L2c LINE L2 -3 3384 3279 2 1204 193 305 59 35 chr4 81140971 81141056 -74489064 - MER5B DNA MER1_type 0 178 92 2 1204 409 273 35 14 chr4 81141099 81141244 -74488876 - L1MC1 LINE L1 -8 6325 6178 2 1204 1146 233 66 33 chr4 81141348 81141712 -74488408 - RCHARR1 DNA MER1_type -78 896 521 2 1204 207 254 0 0 chr4 81141938 81142001 -74488119 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1204 2626 286 65 16 chr4 81142021 81143060 -74487060 - Lx9 LINE L1 -195 7449 6360 2 1204 216 0 0 0 chr4 81143063 81143087 -74487033 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1204 375 78 0 0 chr4 81143087 81143138 -74486982 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1204 832 243 98 0 chr4 81143187 81143401 -74486719 - RCHARR1 DNA MER1_type -735 239 5 2 1204 268 389 54 31 chr4 81143755 81143885 -74486235 + MIRb SINE MIR 65 197 -71 2 1204 623 108 8 0 chr4 81143885 81144005 -74486115 + (GA)n Simple_repeat Simple_repeat 1 121 0 2 1204 232 274 12 23 chr4 81145363 81145449 -74484671 - Lx7 LINE L1 -543 7153 7069 2 1204 28 0 0 0 chr4 81146533 81146561 -74483559 + AT_rich Low_complexity Low_complexity 1 28 0 2 1204 1254 95 0 0 chr4 81146878 81147057 -74483063 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 1204 231 355 93 29 chr4 81147837 81147976 -74482144 - MIR3 SINE MIR -57 151 4 2 1204 216 262 61 15 chr4 81150077 81150143 -74479977 + AmnSINE1 SINE SINE 1 69 -506 2 1204 314 283 8 66 chr4 81151030 81151151 -74478969 + MLT1E2 LTR MaLR 131 244 -383 2 1204 430 307 95 0 chr4 81152366 81152503 -74477617 + RSINE1 SINE B4 2 151 -14 2 1204 1321 25 0 0 chr4 81152546 81152705 -74477415 + B2_Mm1t SINE B2 2 160 -33 2 1204 243 79 0 0 chr4 81152705 81152743 -74477377 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1204 249 260 0 27 chr4 81153824 81153899 -74476221 + MTEa LTR MaLR 279 351 -28 2 1204 621 215 22 22 chr4 81154043 81154181 -74475939 - RSINE1 SINE B4 -16 149 12 2 1204 476 66 26 0 chr4 81155103 81155179 -74474941 + (TTTA)n Simple_repeat Simple_repeat 4 81 0 2 1204 2267 128 35 156 chr4 81155786 81156293 -74473827 - RLTR41 LTR ERV1 0 446 1 2 1204 207 377 0 16 chr4 81156312 81156436 -74473684 + (CATA)n Simple_repeat Simple_repeat 3 124 0 2 1204 558 148 0 0 chr4 81156438 81156539 -74473581 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 1204 345 356 47 0 chr4 81157124 81157273 -74472847 + MER5A1 DNA MER1_type 3 158 -8 2 1204 270 0 0 0 chr4 81157391 81157421 -74472699 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1204 315 71 0 0 chr4 81157421 81157462 -74472658 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1204 403 237 30 30 chr4 81157470 81157605 -74472515 + CT-rich Low_complexity Low_complexity 1 135 0 2 1204 244 343 44 15 chr4 81160004 81160140 -74469980 + MER104 DNA Tc2 32 171 -10 2 1204 734 224 98 10 chr4 81161328 81161522 -74468598 - Lx9 LINE L1 -1104 6540 6330 2 1204 414 0 0 0 chr4 81161573 81161619 -74468501 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 1204 180 330 173 9 chr4 81162377 81162487 -74467633 + MIR SINE MIR 22 149 -113 2 1204 1414 238 32 16 chr4 81162787 81163158 -74466962 - Lx9 LINE L1 -962 6682 6306 2 1204 963 239 108 21 chr4 81163374 81163762 -74466358 + Lx9 LINE L1 7218 7639 -5 2 1204 272 295 31 31 chr4 81164641 81164739 -74465381 - ID4_ SINE ID -53 99 2 2 1204 339 364 53 8 chr4 81164750 81164883 -74465237 - B1F SINE Alu -7 142 4 2 1204 288 0 0 0 chr4 81164887 81164919 -74465201 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 2 1204 358 73 0 68 chr4 81165301 81165360 -74464760 + B1_Mus1 SINE Alu 6 60 -88 2 1204 245 158 112 56 chr4 81165386 81165493 -74464627 + RLTR25B LTR ERVK 397 509 -519 2 1204 799 38 0 19 chr4 81165430 81165538 -74464582 + B1_Mus2 SINE Alu 42 147 0 2 1204 3567 92 12 9 chr4 81165538 81166098 -74464022 - L1_Mm LINE L1 -1329 4554 3993 2 1204 6852 56 6 7 chr4 81166097 81166997 -74463123 + L1_Mus1 LINE L1 5669 6567 0 2 1204 21 0 0 0 chr4 81167148 81167169 -74462951 + AT_rich Low_complexity Low_complexity 1 21 0 2 1204 25 0 0 0 chr4 81168051 81168076 -74462044 + AT_rich Low_complexity Low_complexity 1 25 0 2 1204 241 352 28 0 chr4 81168602 81168710 -74461410 - Charlie15a DNA MER1_type -18 206 96 2 1204 1988 4 0 0 chr4 81168857 81169091 -74461029 - L1Md_T LINE L1 -570 6012 5779 2 1204 852 0 0 0 chr4 81169091 81169233 -74460887 + L1Md_T LINE L1 6476 6582 0 2 1204 1540 0 0 14 chr4 81169759 81169970 -74460150 + (GAA)n Simple_repeat Simple_repeat 1 208 0 2 1204 270 0 0 0 chr4 81170074 81170104 -74460016 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1204 1600 208 30 51 chr4 81170104 81170474 -74459646 - ORR1D1 LTR MaLR -12 362 1 2 1204 873 193 99 0 chr4 81170573 81170765 -74459355 - Lx9 LINE L1 -816 6828 6618 2 1204 2277 233 61 8 chr4 81170747 81171353 -74458767 + Lx9 LINE L1 6827 7464 -180 2 1204 442 188 0 0 chr4 81171370 81171466 -74458654 + L1_Mur3 LINE L1 3660 3755 -2125 2 1204 354 23 0 0 chr4 81171466 81171509 -74458611 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1204 210 143 0 0 chr4 81171587 81171622 -74458498 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 1204 404 293 50 27 chr4 81171995 81172216 -74457904 + Lx9 LINE L1 900 1125 -6483 2 1204 767 66 0 9 chr4 81172250 81172357 -74457763 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 2 1204 837 77 43 36 chr4 81172346 81172611 -74457509 + CT-rich Low_complexity Low_complexity 1 266 0 2 1204 1117 95 0 0 chr4 81172620 81172767 -74457353 - B1_Mus1 SINE Alu 0 148 2 2 1204 4333 148 13 31 chr4 81172910 81173680 -74456440 + RMER6A LTR ERVK 1 756 0 2 1204 2533 187 74 20 chr4 81173708 81174302 -74455818 + RMER6-int LTR ERVK 7 632 -2545 2 1204 418 202 9 66 chr4 81174321 81174427 -74455693 + RMER6-int LTR ERVK 2531 2630 -547 2 1204 513 99 0 0 chr4 81174427 81174508 -74455612 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1204 712 261 80 0 chr4 81174821 81175009 -74455111 + B3 SINE B2 5 207 -9 2 1204 24 0 0 0 chr4 81175012 81175036 -74455084 + AT_rich Low_complexity Low_complexity 1 24 0 2 1204 22 0 0 0 chr4 81176884 81176906 -74453214 + AT_rich Low_complexity Low_complexity 1 22 0 2 1204 469 341 152 6 chr4 81176909 81177080 -74453040 + B4A SINE B4 2 197 -95 2 1204 1643 238 55 54 chr4 81177130 81177820 -74452300 + Lx9 LINE L1 5259 5965 -1679 2 1204 1980 31 12 8 chr4 81178033 81178290 -74451830 + MURVY-LTR LTR ERV1 262 519 0 2 1204 4960 53 0 2 chr4 81178340 81178959 -74451161 + L1Md_F2 LINE L1 5963 6580 -2 2 1204 1173 275 55 50 chr4 81179975 81180434 -74449686 + RMER5 LTR ERV1 48 508 -26 2 1204 704 252 43 14 chr4 81180446 81180655 -74449465 + B3 SINE B2 1 215 -1 2 1204 21 36 0 0 chr4 81181396 81181424 -74448696 + AT_rich Low_complexity Low_complexity 1 28 0 2 1204 252 271 23 99 chr4 81181942 81182114 -74448006 - YREP_Mm Unknown Unknown -1473 339 181 2 1204 1097 70 0 0 chr4 81181975 81182118 -74448002 + B1_Mus1 SINE Alu 6 148 0 2 1204 223 146 0 40 chr4 81182118 81182168 -74447952 + A-rich Low_complexity Low_complexity 1 48 0 2 1204 209 83 0 27 chr4 81182214 81182251 -74447869 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 1204 194 281 81 58 chr4 81183333 81183420 -74446700 - L2a LINE L2 -22 3404 3316 2 1204 518 227 99 23 chr4 81183601 81183732 -74446388 - B1_Mur1 SINE Alu -8 141 1 2 1204 1149 109 21 32 chr4 81183779 81183968 -74446152 + B2_Mm2 SINE B2 1 187 -8 2 1204 691 253 34 12 chr4 81184358 81184549 -74445571 - B3A SINE B2 -11 205 13 2 1204 253 273 4 0 chr4 81184553 81184615 -74445505 + PB1D7 SINE Alu 11 65 -55 2 1204 1505 188 91 11 chr4 81184622 81184741 -74445379 + RMER17C LTR ERVK 16 90 -320 2 1204 599 0 14 0 chr4 81184741 81184812 -74445308 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 1204 1505 185 88 6 chr4 81184812 81185101 -74445019 + RMER17C LTR ERVK 91 409 -1 2 1204 296 186 30 30 chr4 81185101 81185179 -74444941 + B1_Mur1 SINE Alu 37 149 0 2 1204 273 281 68 121 chr4 81186447 81186637 -74443483 - MTE2b LTR MaLR 0 379 200 2 1204 369 250 70 62 chr4 81186701 81186829 -74443291 - MLT1A1 LTR MaLR -279 129 1 2 1204 279 0 0 0 chr4 81188160 81188191 -74441929 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1204 22 35 0 0 chr4 81188220 81188249 -74441871 + AT_rich Low_complexity Low_complexity 1 29 0 3 1204 326 238 36 20 chr4 81188539 81188650 -74441470 - MER104 DNA Tc2 -64 117 1 3 1204 23 33 0 0 chr4 81188706 81188736 -74441384 + AT_rich Low_complexity Low_complexity 1 30 0 3 1204 479 82 41 0 chr4 81188764 81188837 -74441283 - BC1_Mm scRNA scRNA -76 76 1 3 1204 522 57 0 0 chr4 81188853 81188923 -74441197 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1204 761 275 0 42 chr4 81188923 81189113 -74441007 - B3A SINE B2 -16 182 1 3 1204 23 78 0 0 chr4 81191157 81191208 -74438912 + AT_rich Low_complexity Low_complexity 1 51 0 3 1204 198 286 13 91 chr4 81192031 81192108 -74438012 - MIRm SINE MIR -122 154 84 3 1204 3856 219 39 34 chr4 81193470 81193657 -74436463 + Lx9 LINE L1 6627 6804 -840 3 1204 3774 96 4 4 chr4 81193657 81194183 -74435937 + L1Md_F2 LINE L1 6055 6580 -2 3 1204 3856 219 39 34 chr4 81194183 81195007 -74435113 + Lx9 LINE L1 6805 7643 -1 3 1204 212 179 0 25 chr4 81195500 81195540 -74434580 + GA-rich Low_complexity Low_complexity 4 42 0 3 1204 314 301 21 128 chr4 81195540 81195681 -74434439 - RSINE1 SINE B4 -36 129 4 3 1204 181 224 40 107 chr4 81196176 81196251 -74433869 + L3 LINE CR1 912 981 -3508 3 1204 266 50 25 0 chr4 81197078 81197118 -74433002 + (TAA)n Simple_repeat Simple_repeat 3 43 0 3 1204 297 0 0 0 chr4 81197865 81197898 -74432222 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1204 2348 177 167 4 chr4 81199383 81199631 -74430489 + RMER6C LTR ERVK 58 376 -314 3 1204 342 0 0 0 chr4 81199631 81199669 -74430451 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1204 2348 177 167 4 chr4 81199669 81199964 -74430156 + RMER6C LTR ERVK 377 689 -1 3 1204 459 0 0 0 chr4 81200185 81200236 -74429884 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1204 369 0 0 0 chr4 81200236 81200276 -74429844 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1204 3096 68 2 5 chr4 81200724 81201121 -74428999 - MTA_Mm LTR MaLR 0 396 1 3 1204 313 274 42 62 chr4 81201127 81201271 -74428849 - MER2 DNA MER2_type -126 219 79 3 1204 375 214 30 30 chr4 81201897 81201998 -74428122 - PB1D10 SINE Alu -1 116 16 3 1204 344 315 0 0 chr4 81202015 81202107 -74428013 - MER63D DNA AcHobo -964 97 6 3 1204 21 0 0 0 chr4 81203925 81203946 -74426174 + AT_rich Low_complexity Low_complexity 1 21 0 3 1204 31 44 0 0 chr4 81204485 81204530 -74425590 + AT_rich Low_complexity Low_complexity 1 45 0 3 1204 1179 104 0 0 chr4 81204701 81204874 -74425246 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 3 1204 279 0 0 0 chr4 81204877 81204908 -74425212 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 3 1204 1129 82 14 0 chr4 81204908 81205054 -74425066 - B1_Mus1 SINE Alu 0 148 1 3 1204 25 51 0 0 chr4 81205058 81205097 -74425023 + AT_rich Low_complexity Low_complexity 1 39 0 3 1204 1152 60 0 0 chr4 81205250 81205399 -74424721 + (TTC)n Simple_repeat Simple_repeat 2 150 0 3 1204 1005 82 11 29 chr4 81205399 81205564 -74424556 - L1_Mus4 LINE L1 -27 6609 6445 3 1204 1828 99 0 0 chr4 81205561 81205824 -74424296 + L1_Mus4 LINE L1 5943 6205 -431 3 1204 518 205 85 8 chr4 81205833 81205845 -74424275 - B4 SINE B4 -81 211 86 3 1204 726 95 19 0 chr4 81205845 81205950 -74424170 - B1_Mus2 SINE Alu -40 107 1 3 1204 389 288 23 23 chr4 81206513 81206775 -74423345 + GA-rich Low_complexity Low_complexity 1 261 0 3 1204 374 262 13 34 chr4 81206792 81207038 -74423082 + GA-rich Low_complexity Low_complexity 1 240 0 3 1204 224 100 0 24 chr4 81207042 81207083 -74423037 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 3 1204 1164 79 0 0 chr4 81208262 81208440 -74421680 + (GA)n Simple_repeat Simple_repeat 2 179 0 3 1204 183 156 0 0 chr4 81208440 81208472 -74421648 + GA-rich Low_complexity Low_complexity 2 33 0 3 1204 294 370 29 17 chr4 81208829 81209015 -74421105 - MIRc SINE MIR -26 242 60 3 1204 480 18 0 0 chr4 81209185 81209242 -74420878 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1204 348 24 0 0 chr4 81209243 81209284 -74420836 + (TATG)n Simple_repeat Simple_repeat 2 42 0 3 1204 21 36 0 0 chr4 81212021 81212049 -74418071 + AT_rich Low_complexity Low_complexity 1 28 0 3 1204 180 176 0 0 chr4 81212555 81212589 -74417531 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 3 1204 315 0 0 0 chr4 81213828 81213863 -74416257 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1204 189 0 0 0 chr4 81214297 81214318 -74415802 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1204 444 19 0 0 chr4 81215400 81215453 -74414667 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1204 297 0 0 0 chr4 81215453 81215485 -74414635 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1204 334 127 0 27 chr4 81215801 81215874 -74414246 + A-rich Low_complexity Low_complexity 3 73 0 3 1204 22 0 0 0 chr4 81216416 81216438 -74413682 + AT_rich Low_complexity Low_complexity 1 22 0 3 1204 410 260 0 37 chr4 81216572 81216680 -74413440 - PB1D10 SINE Alu -13 104 1 3 1204 382 79 32 0 chr4 81216698 81216761 -74413359 + (CAA)n Simple_repeat Simple_repeat 2 66 0 3 1204 26 30 0 0 chr4 81217235 81217268 -74412852 + AT_rich Low_complexity Low_complexity 1 33 0 3 1204 537 16 0 0 chr4 81217582 81217644 -74412476 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1204 342 338 33 33 chr4 81218322 81218475 -74411645 + MER45A DNA Tip100 2 154 -24 3 1204 309 349 23 4 chr4 81219168 81219288 -74410832 - B1F1 SINE Alu -20 127 2 3 1204 440 283 71 0 chr4 81219327 81219440 -74410680 + RSINE1 SINE B4 3 123 -42 3 1204 860 45 0 9 chr4 81220749 81220862 -74409258 + B1_Mus1 SINE Alu 37 148 0 3 1204 188 273 121 0 chr4 81221890 81221956 -74408164 + MIRc SINE MIR 169 242 -26 3 1204 33 43 0 0 chr4 81222511 81222558 -74407562 + AT_rich Low_complexity Low_complexity 1 47 0 3 1204 205 250 174 0 chr4 81223054 81223146 -74406974 - MIRb SINE MIR -119 149 42 3 1204 22 94 0 0 chr4 81223263 81223327 -74406793 + AT_rich Low_complexity Low_complexity 1 64 0 3 1204 302 284 53 59 chr4 81223384 81223571 -74406549 - Tigger14a DNA MER2_type -56 268 83 3 1204 225 83 0 0 chr4 81224041 81224077 -74406043 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1204 21 57 0 0 chr4 81228346 81228381 -74401739 + AT_rich Low_complexity Low_complexity 1 35 0 3 1204 441 36 0 0 chr4 81229128 81229183 -74400937 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 3 1204 1065 134 0 0 chr4 81229183 81229355 -74400765 + (GGGAA)n Simple_repeat Simple_repeat 3 174 0 3 1204 250 331 60 8 chr4 81230417 81230551 -74399569 - L2a LINE L2 -12 3414 3274 3 1204 459 0 0 0 chr4 81230827 81230878 -74399242 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1204 268 294 113 47 chr4 81231219 81231369 -74398751 - MLT1J LTR MaLR -4 508 349 3 1204 1086 115 0 0 chr4 81231407 81231572 -74398548 + (TA)n Simple_repeat Simple_repeat 1 165 0 3 1204 198 0 0 0 chr4 81231572 81231594 -74398526 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1204 494 203 21 7 chr4 81231698 81231842 -74398278 + CT-rich Low_complexity Low_complexity 2 147 0 3 1204 7107 61 23 1 chr4 81231995 81233122 -74396998 - L1Md_F2 LINE L1 -12 6570 5421 3 1204 449 110 0 14 chr4 81233127 81233201 -74396919 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 3 1204 431 0 37 0 chr4 81233202 81233256 -74396864 + (TTCTC)n Simple_repeat Simple_repeat 3 58 0 3 1204 1445 34 0 6 chr4 81233256 81233436 -74396684 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 3 1204 378 0 0 0 chr4 81233436 81233478 -74396642 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 3 1204 596 198 7 84 chr4 81233479 81233622 -74396498 - B1_Mus1 SINE Alu -12 136 5 3 1204 2543 238 43 62 chr4 81234756 81234817 -74395303 + Lx7 LINE L1 6830 6891 -805 3 1204 536 0 0 15 chr4 81234817 81234882 -74395238 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1204 2543 238 43 62 chr4 81234882 81235351 -74394769 + Lx7 LINE L1 6892 7357 -339 3 1204 1930 70 0 15 chr4 81235351 81235614 -74394506 + L1Md_F2 LINE L1 6310 6568 -14 3 1204 2543 238 43 62 chr4 81235614 81235640 -74394480 + Lx7 LINE L1 7358 7363 -333 3 1204 432 0 0 0 chr4 81235640 81235688 -74394432 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1204 2543 244 52 58 chr4 81235688 81236020 -74394100 + Lx7 LINE L1 7139 7648 -48 3 1204 536 0 16 0 chr4 81236264 81236328 -74393792 + (TAG)n Simple_repeat Simple_repeat 3 67 0 3 1204 468 0 0 0 chr4 81238055 81238107 -74392013 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1204 1168 82 0 0 chr4 81239308 81239455 -74390665 + B1_Mus2 SINE Alu 1 147 0 3 1204 194 211 50 50 chr4 81241022 81241102 -74389018 - L2 LINE L2 -534 2885 2806 3 1204 1993 269 55 36 chr4 81241106 81241801 -74388319 - Lx8 LINE L1 -2 7471 6764 3 1204 216 0 0 0 chr4 81242118 81242142 -74387978 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1204 324 70 0 0 chr4 81243732 81243775 -74386345 + (TCC)n Simple_repeat Simple_repeat 1 43 0 3 1204 1167 36 0 0 chr4 81243818 81243955 -74386165 - B1_Mm SINE Alu -9 138 2 3 1204 1533 205 94 11 chr4 81243962 81244396 -74385724 - Lx2B LINE L1 -4 6996 6527 3 1204 2194 159 59 2 chr4 81244395 81244719 -74385401 + MusHAL1 LINE L1 514 839 -1873 3 1204 216 67 0 0 chr4 81244719 81244749 -74385371 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1204 2194 159 59 2 chr4 81244749 81244897 -74385223 + MusHAL1 LINE L1 840 1012 -1700 3 1204 201 74 0 0 chr4 81245792 81245819 -74384301 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1204 482 329 64 13 chr4 81246497 81246654 -74383466 + B3A SINE B2 1 165 -33 3 1204 667 313 56 16 chr4 81247664 81247914 -74382206 - MER2 DNA MER2_type 0 345 86 3 1204 1124 251 23 9 chr4 81248376 81248861 -74381259 + Lx5 LINE L1 6072 6805 -655 3 1204 532 244 236 30 chr4 81248904 81248986 -74381134 + Lx5 LINE L1 7078 7174 -286 3 1204 480 35 0 0 chr4 81248986 81249044 -74381076 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1204 532 244 236 30 chr4 81249044 81249257 -74380863 + Lx5 LINE L1 7175 7434 -26 3 1204 238 266 0 0 chr4 81249318 81249382 -74380738 + CT-rich Low_complexity Low_complexity 1 64 0 3 1204 549 55 0 0 chr4 81249394 81249467 -74380653 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1204 297 0 0 0 chr4 81249602 81249635 -74380485 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1204 212 338 19 12 chr4 81249776 81249938 -74380182 + T-rich Low_complexity Low_complexity 1 163 0 4 1204 310 282 20 48 chr4 81250680 81250869 -74379251 + L1M2 LINE L1 2243 2423 -3720 4 1204 468 77 0 0 chr4 81250896 81250961 -74379159 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1204 267 61 0 0 chr4 81250962 81250995 -74379125 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1204 348 146 0 33 chr4 81250995 81251087 -74379033 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1204 2194 252 41 80 chr4 81251087 81251812 -74378308 + MERVL_2A-int LTR ERVL 4459 5155 -606 4 1204 898 280 91 35 chr4 81251812 81252097 -74378023 + ORR1E LTR MaLR 1 301 -58 4 1204 371 289 79 0 chr4 81252131 81252245 -74377875 + MTE-int LTR MaLR 2 124 -1456 4 1204 1083 271 63 6 chr4 81252288 81252637 -74377483 + ERVL-B4-int LTR ERVL 5043 5411 -303 4 1204 318 26 0 0 chr4 81252642 81252681 -74377439 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1204 4036 266 108 20 chr4 81252685 81254295 -74375825 - MERVL_2A-int LTR ERVL -1310 4451 2701 4 1204 1846 316 55 21 chr4 81254361 81255704 -74374416 + L1M2 LINE L1 3880 5268 -875 4 1204 832 250 105 38 chr4 81255721 81256112 -74374008 + L1MB1 LINE L1 5494 5910 -279 4 1204 387 0 0 0 chr4 81256150 81256193 -74373927 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1204 297 341 96 0 chr4 81257993 81258128 -74371992 - Arthur1A DNA Tip100 -12 165 18 4 1204 181 333 73 18 chr4 81258443 81258553 -74371567 + MIR SINE MIR 125 240 -22 4 1204 440 301 52 30 chr4 81258921 81259188 -74370932 + L1M4 LINE L1 4487 4759 -1387 4 1204 255 407 26 20 chr4 81260920 81261073 -74369047 - MLT1K LTR MaLR -330 265 112 4 1204 511 203 22 96 chr4 81261777 81261913 -74368207 + B1F SINE Alu 24 149 0 4 1204 484 301 14 42 chr4 81261977 81262119 -74368001 + RSINE1 SINE B4 8 145 -20 4 1204 27 62 0 0 chr4 81262330 81262378 -74367742 + AT_rich Low_complexity Low_complexity 1 48 0 4 1204 22 56 0 0 chr4 81262824 81262860 -74367260 + AT_rich Low_complexity Low_complexity 1 36 0 4 1204 1998 190 77 5 chr4 81263115 81263506 -74366614 + MTD LTR MaLR 1 419 0 4 1204 1137 268 73 16 chr4 81263862 81264165 -74365955 + ORR1E LTR MaLR 40 359 0 4 1205 323 216 11 33 chr4 81265180 81265271 -74364849 - RMER30 DNA MER1_type -89 113 25 4 1205 222 214 0 0 chr4 81265299 81265341 -74364779 + CT-rich Low_complexity Low_complexity 2 43 0 4 1205 313 180 0 0 chr4 81266159 81266209 -74363911 - ID_B1 SINE B4 -9 215 166 4 1205 424 283 48 11 chr4 81266970 81267156 -74362964 - L1M5 LINE L1 -305 5819 5627 4 1205 392 289 0 26 chr4 81268438 81268555 -74361565 + B1F1 SINE Alu 16 129 -20 4 1205 27 29 0 0 chr4 81269538 81269572 -74360548 + AT_rich Low_complexity Low_complexity 1 34 0 4 1205 411 21 0 0 chr4 81269617 81269665 -74360455 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1205 21 0 0 0 chr4 81271038 81271059 -74359061 + AT_rich Low_complexity Low_complexity 1 21 0 4 1205 250 330 38 0 chr4 81271715 81271821 -74358299 + Tigger16b DNA Tigger 202 311 -26 4 1205 186 43 0 0 chr4 81272713 81272736 -74357384 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1205 218 200 0 22 chr4 81273328 81273374 -74356746 + GA-rich Low_complexity Low_complexity 1 45 0 4 1205 483 18 0 0 chr4 81275011 81275067 -74355053 + (TAAAA)n Simple_repeat Simple_repeat 4 59 0 4 1205 187 224 74 105 chr4 81275241 81275336 -74354784 - L4 LINE RTE -485 1544 1453 4 1205 1169 188 0 26 chr4 81275656 81275886 -74354234 + URR1A DNA MER1_type 3 226 0 4 1205 226 255 18 18 chr4 81276733 81276789 -74353331 - B1F2 SINE Alu -89 60 5 4 1205 234 302 16 0 chr4 81277276 81277339 -74352781 - MLT1I LTR MaLR 0 411 348 4 1205 325 333 43 7 chr4 81277467 81277606 -74352514 - MLT1I LTR MaLR -220 191 48 4 1205 26 50 0 0 chr4 81277635 81277675 -74352445 + AT_rich Low_complexity Low_complexity 1 40 0 4 1205 528 291 115 0 chr4 81277690 81277872 -74352248 + MER20 DNA MER1_type 17 219 0 4 1205 252 278 58 17 chr4 81278086 81278258 -74351862 + L1M5 LINE L1 4938 5116 -1030 4 1205 1087 257 46 23 chr4 81278284 81278587 -74351533 + Lx6 LINE L1 6969 7278 -182 4 1205 231 88 0 0 chr4 81278587 81278621 -74351499 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 4 1205 256 191 43 29 chr4 81278684 81278754 -74351366 + Lx7 LINE L1 7208 7278 -418 4 1205 211 212 35 12 chr4 81278799 81278885 -74351235 + (TTTG)n Simple_repeat Simple_repeat 1 88 0 4 1205 39 74 0 0 chr4 81278991 81279072 -74351048 + AT_rich Low_complexity Low_complexity 1 81 0 4 1205 745 275 172 21 chr4 81279076 81279147 -74350973 - Lx8 LINE L1 -12 7461 7387 4 1205 486 0 0 0 chr4 81279147 81279201 -74350919 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1205 745 275 172 21 chr4 81279201 81279467 -74350653 - Lx8 LINE L1 -87 7386 7073 4 1205 1671 171 92 12 chr4 81279467 81279793 -74350327 + ORR1C2 LTR MaLR 31 382 -2 4 1205 336 306 48 20 chr4 81279793 81279940 -74350180 - Lx8 LINE L1 -399 7074 6924 4 1205 535 203 67 8 chr4 81280145 81280264 -74349856 + B1_Mus2 SINE Alu 2 127 -20 4 1205 307 360 160 4 chr4 81280361 81280598 -74349522 + L1MC4a LINE L1 6831 7104 -778 4 1205 244 306 80 9 chr4 81280664 81280776 -74349344 + L1MC4a LINE L1 7346 7465 -530 4 1205 1187 69 0 0 chr4 81281591 81281736 -74348384 + B1_Mm SINE Alu 2 146 -1 4 1205 23 33 0 0 chr4 81281845 81281875 -74348245 + AT_rich Low_complexity Low_complexity 1 30 0 4 1205 274 318 51 32 chr4 81282150 81282306 -74347814 - LTR79 LTR ERVL -44 483 325 4 1205 2057 20 0 0 chr4 81283850 81284098 -74346022 - L1Md_F2 LINE L1 -570 6012 5765 4 1205 1156 85 17 6 chr4 81284098 81284275 -74345845 + L1Md_F2 LINE L1 6404 6582 0 4 1205 282 206 0 0 chr4 81285215 81285278 -74344842 + GA-rich Low_complexity Low_complexity 3 65 0 4 1205 251 93 0 23 chr4 81285957 81286001 -74344119 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1205 200 281 0 50 chr4 81286240 81286300 -74343820 + MIRm SINE MIR 110 166 -110 4 1205 347 68 96 0 chr4 81286893 81286966 -74343154 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 4 1205 280 285 41 20 chr4 81287260 81287359 -74342761 + MLT1H1 LTR MaLR 31 159 -390 4 1205 725 148 6 4 chr4 81287377 81287523 -74342597 - ORR1C1 LTR MaLR -2 382 236 4 1205 227 333 0 0 chr4 81287630 81287717 -74342403 + GA-rich Low_complexity Low_complexity 1 87 0 4 1205 561 155 498 0 chr4 81287852 81288036 -74342084 - ORR1C1 LTR MaLR -102 276 1 4 1205 596 380 14 52 chr4 81288115 81288406 -74341714 + MLT1H1 LTR MaLR 273 552 -3 4 1205 305 272 32 21 chr4 81288528 81288622 -74341498 + PB1D7 SINE Alu 16 110 -10 4 1205 421 343 7 7 chr4 81289290 81289428 -74340692 - ID_B1 SINE B4 -1 223 86 4 1205 458 234 44 193 chr4 81291361 81291548 -74338572 - B3 SINE B2 -5 211 33 4 1205 1737 116 4 0 chr4 81291548 81291815 -74338305 - L1_Mus4 LINE L1 0 6636 6369 4 1205 458 243 152 81 chr4 81291815 81291855 -74338265 - B3 SINE B2 -184 32 1 4 1205 224 258 0 31 chr4 81292625 81292689 -74337431 - L4 LINE RTE -541 1488 1427 4 1205 588 370 32 29 chr4 81293025 81293370 -74336750 - L4 LINE RTE -1119 910 565 4 1205 337 324 42 35 chr4 81293523 81293667 -74336453 - MIRb SINE MIR -68 200 56 4 1205 805 150 19 0 chr4 81294810 81294970 -74335150 + CT-rich Low_complexity Low_complexity 1 163 0 4 1205 24 53 0 0 chr4 81296214 81296252 -74333868 + AT_rich Low_complexity Low_complexity 1 38 0 4 1205 42 98 0 0 chr4 81296421 81296554 -74333566 + AT_rich Low_complexity Low_complexity 1 133 0 4 1205 207 130 74 0 chr4 81296560 81296614 -74333506 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1205 2798 205 128 58 chr4 81298777 81299672 -74330448 + RMER17B LTR ERVK 1 958 0 4 1205 207 0 0 0 chr4 81299767 81299790 -74330330 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1205 638 365 5 9 chr4 81299875 81300085 -74330035 + B4A SINE B4 79 287 -5 4 1205 191 114 29 0 chr4 81300117 81300152 -74329968 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1205 4345 72 98 0 chr4 81300224 81300817 -74329303 + L1_Mus1 LINE L1 5916 6566 -1 4 1205 732 191 8 117 chr4 81301197 81301446 -74328674 - Lx6 LINE L1 -28 7432 7211 4 1205 2493 189 29 5 chr4 81301445 81302107 -74328013 - Lx6 LINE L1 -1226 6234 5537 4 1205 2582 191 72 8 chr4 81302109 81302805 -74327315 + Lx6 LINE L1 4726 5528 -349 4 1205 264 240 288 83 chr4 81302838 81302970 -74327150 - B3A SINE B2 -20 178 20 4 1205 484 264 0 0 chr4 81302992 81303102 -74327018 - PB1D9 SINE Alu -8 112 3 4 1205 2620 230 34 4 chr4 81303108 81303662 -74326458 - Lx6 LINE L1 -1 7459 6889 4 1205 333 47 0 0 chr4 81305456 81305499 -74324621 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1205 22 70 0 0 chr4 81308092 81308135 -74321985 + AT_rich Low_complexity Low_complexity 1 43 0 4 1205 1435 111 298 0 chr4 81308615 81308867 -74321253 - ORR1A2 LTR MaLR 0 327 1 4 1205 4203 141 26 11 chr4 81308867 81309982 -74320138 - ORR1A2-int LTR MaLR 0 1963 1 4 1205 1987 157 16 0 chr4 81309982 81310301 -74319819 - ORR1A2 LTR MaLR 0 327 4 4 1205 22 0 0 0 chr4 81310588 81310610 -74319510 + AT_rich Low_complexity Low_complexity 1 22 0 4 1205 33 0 0 0 chr4 81311864 81311897 -74318223 + AT_rich Low_complexity Low_complexity 1 33 0 4 1205 3863 117 24 7 chr4 81311897 81312492 -74317628 - Lx4A LINE L1 -2 7056 6452 4 1205 247 171 26 0 chr4 81312800 81312876 -74317244 + (TTG)n Simple_repeat Simple_repeat 1 78 0 4 1205 352 330 54 43 chr4 81312885 81313069 -74317051 - L1MC4 LINE L1 -55 7987 7802 4 1205 261 0 0 0 chr4 81313280 81313309 -74316811 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1205 353 353 70 40 chr4 81313322 81314074 -74316046 - L1MC4 LINE L1 -480 7562 6788 4 1205 341 309 102 7 chr4 81314081 81314218 -74315902 - L1MC4 LINE L1 -1235 6647 6498 4 1205 22 56 0 0 chr4 81317648 81317684 -74312436 + AT_rich Low_complexity Low_complexity 1 36 0 4 1205 1104 45 0 15 chr4 81318430 81318566 -74311554 - B1_Mm SINE Alu -12 135 2 4 1205 21 36 0 0 chr4 81319184 81319212 -74310908 + AT_rich Low_complexity Low_complexity 1 28 0 4 1205 203 207 35 0 chr4 81319317 81319375 -74310745 + CT-rich Low_complexity Low_complexity 2 61 0 4 1205 419 294 72 52 chr4 81319497 81319730 -74310390 - Lx7 LINE L1 -251 7222 6949 4 1205 189 107 0 0 chr4 81320128 81320156 -74309964 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1205 846 280 90 20 chr4 81320217 81320461 -74309659 - B4A SINE B4 -29 263 3 5 1205 207 0 0 0 chr4 81322214 81322237 -74307883 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1205 457 329 29 17 chr4 81322257 81322527 -74307593 - Lx8 LINE L1 -239 7234 6948 5 1205 2146 177 46 5 chr4 81322527 81322919 -74307201 + MTC LTR MaLR 1 408 -13 5 1205 1049 344 57 2 chr4 81322933 81323411 -74306709 - Lx8 LINE L1 -511 6962 6459 5 1205 7302 63 7 1 chr4 81323404 81324620 -74305500 + L1_Mus1 LINE L1 5345 6567 0 5 1205 27 62 0 0 chr4 81325050 81325098 -74305022 + AT_rich Low_complexity Low_complexity 1 48 0 5 1205 306 315 52 42 chr4 81325106 81325298 -74304822 - L1M2 LINE L1 -1813 4330 4137 5 1205 534 126 0 46 chr4 81325550 81325658 -74304462 - L1Md_F2 LINE L1 -2 6580 6478 5 1205 513 84 0 0 chr4 81325712 81325783 -74304337 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 5 1205 255 316 20 0 chr4 81325794 81325892 -74304228 - Lx8 LINE L1 -199 7274 7175 5 1205 586 238 166 24 chr4 81325915 81326126 -74303994 - Lx8 LINE L1 -525 6948 6708 5 1205 28 0 0 0 chr4 81326468 81326496 -74303624 + AT_rich Low_complexity Low_complexity 1 28 0 5 1205 243 0 0 0 chr4 81326862 81326889 -74303231 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1205 348 232 0 0 chr4 81327390 81327522 -74302598 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 1205 22 0 0 0 chr4 81327522 81327544 -74302576 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 626 267 14 0 chr4 81328610 81328756 -74301364 - B3 SINE B2 -5 211 64 5 1205 212 54 54 0 chr4 81328946 81328983 -74301137 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1205 3049 23 0 3 chr4 81329193 81329540 -74300580 - ORR1A0 LTR MaLR 0 346 1 5 1205 192 231 26 0 chr4 81329915 81329954 -74300166 + L3 LINE CR1 4341 4380 -109 5 1205 747 343 35 30 chr4 81330002 81330399 -74299721 + Lx8 LINE L1 6722 7120 -353 5 1205 546 54 0 0 chr4 81330419 81330493 -74299627 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1205 369 307 47 8 chr4 81330640 81330768 -74299352 + MIR SINE MIR 129 261 -1 5 1205 1025 270 38 102 chr4 81331322 81331722 -74298398 + MTE2a LTR MaLR 6 379 0 5 1205 432 0 0 0 chr4 81332753 81332801 -74297319 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1205 500 76 0 12 chr4 81333094 81333174 -74296946 + L1Md_F2 LINE L1 6492 6570 -12 5 1205 977 177 21 11 chr4 81333836 81334024 -74296096 - URR1B DNA MER1_type 0 225 36 5 1205 392 0 21 0 chr4 81334105 81334153 -74295967 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1205 567 0 0 0 chr4 81334187 81334250 -74295870 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1205 24 32 0 0 chr4 81334309 81334340 -74295780 + AT_rich Low_complexity Low_complexity 1 31 0 5 1205 234 0 0 0 chr4 81335111 81335137 -74294983 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1205 1210 106 45 0 chr4 81335147 81335326 -74294794 + B2_Mm2 SINE B2 1 187 -8 5 1205 180 213 85 0 chr4 81335428 81335475 -74294645 + L2b LINE L2 3325 3375 0 5 1205 218 281 104 19 chr4 81335479 81335592 -74294528 + MIRc SINE MIR 82 199 -63 5 1205 22 0 0 0 chr4 81335669 81335691 -74294429 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 631 203 83 0 chr4 81336155 81336288 -74293832 - B1_Mur1 SINE Alu -5 144 1 5 1205 631 243 75 51 chr4 81336418 81336794 -74293326 - Lx9 LINE L1 -1536 6108 5735 5 1205 718 220 31 15 chr4 81336827 81337009 -74293111 + B3 SINE B2 8 186 -9 5 1205 3706 73 6 0 chr4 81337812 81338331 -74291789 - L1Md_F2 LINE L1 -527 5356 4835 5 1205 1689 59 0 0 chr4 81338321 81338540 -74291580 + L1Md_F2 LINE L1 5367 5585 -298 5 1205 7589 60 24 4 chr4 81338541 81339515 -74290605 + L1Md_F2 LINE L1 5587 6579 -3 5 1205 189 0 0 0 chr4 81339518 81339539 -74290581 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1205 1457 247 75 10 chr4 81340105 81340493 -74289627 - MTD LTR MaLR 0 419 7 5 1205 858 301 50 27 chr4 81341109 81341672 -74288448 - L1ME1 LINE L1 -200 5979 5404 5 1205 322 330 4 124 chr4 81341725 81341974 -74288146 - L1ME1 LINE L1 -841 5305 5087 5 1205 288 0 0 0 chr4 81342266 81342298 -74287822 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1205 207 0 0 0 chr4 81342951 81342974 -74287146 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1205 24 32 0 0 chr4 81344878 81344909 -74285211 + AT_rich Low_complexity Low_complexity 1 31 0 5 1205 39350 6 1 1 chr4 81344909 81351685 -74278435 - L1Md_A LINE L1 -1 6581 1 5 1205 1005 201 67 0 chr4 81352111 81352305 -74277815 + B3 SINE B2 10 216 0 5 1205 1433 44 0 0 chr4 81352629 81352810 -74277310 + L1Md_F3 LINE L1 6063 6243 -341 5 1205 201 94 0 0 chr4 81352859 81352891 -74277229 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1205 24 32 0 0 chr4 81353279 81353310 -74276810 + AT_rich Low_complexity Low_complexity 1 31 0 5 1205 1766 192 68 9 chr4 81354024 81354359 -74275761 + Lx7 LINE L1 5431 5791 -89 5 1205 330 26 0 0 chr4 81354359 81354398 -74275722 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1205 1766 205 103 7 chr4 81354398 81354628 -74275492 + Lx7 LINE L1 5792 6050 -1646 5 1205 890 106 7 0 chr4 81354634 81354775 -74275345 + (GGAGA)n Simple_repeat Simple_repeat 3 144 0 5 1205 600 183 130 0 chr4 81354779 81354910 -74275210 + ORR1D1 LTR MaLR 1 148 -226 5 1205 1320 98 38 19 chr4 81354910 81355119 -74275001 + RMER6B LTR ERVK 1 213 -248 5 1205 4537 218 68 23 chr4 81355119 81356265 -74273855 + Lx7 LINE L1 6164 7361 -335 5 1205 1531 193 68 7 chr4 81356270 81356562 -74273558 - ORR1C2 LTR MaLR -57 327 18 5 1205 3736 60 37 2 chr4 81356689 81357173 -74272947 + L1_Mus1 LINE L1 6067 6567 0 5 1205 458 185 45 23 chr4 81357429 81357562 -74272558 + Lx7 LINE L1 7561 7696 0 5 1205 611 279 32 7 chr4 81359356 81359511 -74270609 + MLT1A0 LTR MaLR 1 159 -206 5 1205 940 315 58 6 chr4 81359718 81360063 -74270057 - MTEb LTR MaLR 0 379 17 5 1205 216 0 0 0 chr4 81360139 81360163 -74269957 + (TATG)n Simple_repeat Simple_repeat 2 25 0 5 1205 210 37 0 0 chr4 81360653 81360680 -74269440 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1205 318 254 0 66 chr4 81361534 81361610 -74268510 + ID_B1 SINE B4 78 148 -76 5 1205 414 164 154 0 chr4 81361933 81362037 -74268083 + Lx5 LINE L1 6931 7050 0 5 1205 20709 23 2 0 chr4 81362212 81364766 -74265354 + L1Md_A LINE L1 3029 5586 -297 5 1205 8525 29 0 0 chr4 81364766 81365762 -74264358 + L1Md_A LINE L1 5587 6582 0 5 1205 629 318 48 150 chr4 81366046 81366596 -74263524 - RMER20B LTR ERVK -51 576 30 5 1205 424 256 101 81 chr4 81367392 81367689 -74262431 + L1ME2 LINE L1 5859 6161 -3 5 1205 1243 80 91 0 chr4 81368003 81368190 -74261930 - L1_Mus2 LINE L1 -1 6565 6362 5 1205 3081 269 58 25 chr4 81368190 81369287 -74260833 - RMER1C Other Other -12 1330 20 5 1205 667 246 7 0 chr4 81369333 81369471 -74260649 - B1_Mur1 SINE Alu -5 144 6 5 1205 441 54 0 0 chr4 81369484 81369540 -74260580 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1205 279 0 0 0 chr4 81369540 81369571 -74260549 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1205 393 58 0 0 chr4 81369571 81369622 -74260498 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1205 22 0 0 0 chr4 81369778 81369800 -74260320 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 612 178 45 13 chr4 81369837 81369991 -74260129 - Lx LINE L1 -7 6647 6489 5 1205 3153 234 47 63 chr4 81370143 81370509 -74259611 - ORR1B1-int LTR MaLR -606 903 530 5 1205 994 134 0 0 chr4 81370509 81370651 -74259469 + B1_Mus1 SINE Alu 5 146 -2 5 1205 3153 234 47 63 chr4 81370651 81371202 -74258918 - ORR1B1-int LTR MaLR -980 529 1 5 1205 1823 177 73 11 chr4 81371202 81371573 -74258547 - ORR1B1 LTR MaLR 0 394 1 5 1205 522 256 32 0 chr4 81371575 81371731 -74258389 + Lx9 LINE L1 6816 6976 -668 5 1205 324 0 0 0 chr4 81374076 81374112 -74256008 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1205 183 42 0 0 chr4 81374257 81374281 -74255839 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1205 210 37 0 0 chr4 81374824 81374851 -74255269 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1205 453 115 0 0 chr4 81374851 81374938 -74255182 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1205 356 351 9 0 chr4 81374950 81375061 -74255059 - RSINE1 SINE B4 -50 115 4 5 1205 576 0 0 0 chr4 81375201 81375265 -74254855 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1205 183 273 35 35 chr4 81375908 81375965 -74254155 + MIRb SINE MIR 115 171 -97 5 1205 826 246 5 11 chr4 81376094 81376283 -74253837 + B3A SINE B2 3 190 -8 5 1205 25 0 0 0 chr4 81377215 81377240 -74252880 + AT_rich Low_complexity Low_complexity 1 25 0 5 1205 387 0 0 0 chr4 81377241 81377284 -74252836 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1205 224 212 0 24 chr4 81377532 81377614 -74252506 + (CATA)n Simple_repeat Simple_repeat 3 82 0 5 1205 1501 264 125 41 chr4 81377667 81378245 -74251875 + Lx8 LINE L1 6729 7350 -123 5 1205 423 0 0 0 chr4 81378245 81378292 -74251828 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1205 315 0 0 0 chr4 81378292 81378326 -74251794 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1205 1501 264 125 41 chr4 81378326 81378433 -74251687 + Lx8 LINE L1 7351 7472 -1 5 1205 189 121 0 0 chr4 81379078 81379111 -74251009 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 1205 2506 75 3 6 chr4 81380724 81381071 -74249049 + L1Md_F2 LINE L1 6225 6570 -12 5 1205 297 398 57 37 chr4 81381276 81381576 -74248544 + MER115 DNA Tip100 35 340 -353 5 1205 234 192 133 27 chr4 81381733 81381808 -74248312 + MER115 DNA Tip100 556 638 -55 5 1205 237 33 0 0 chr4 81382171 81382201 -74247919 + (TATAA)n Simple_repeat Simple_repeat 2 31 0 5 1205 39 22 0 0 chr4 81382422 81382468 -74247652 + AT_rich Low_complexity Low_complexity 1 46 0 5 1205 5051 60 6 9 chr4 81383068 81383442 -74246678 + L1_Mus1 LINE L1 5913 6290 -277 5 1205 3550 13 2 0 chr4 81383442 81383837 -74246283 - MTA_Mm LTR MaLR 0 396 1 5 1205 5051 60 6 9 chr4 81383837 81384117 -74246003 + L1_Mus1 LINE L1 6291 6565 -2 5 1205 29 0 0 0 chr4 81384156 81384185 -74245935 + AT_rich Low_complexity Low_complexity 1 29 0 5 1205 414 0 0 0 chr4 81384448 81384494 -74245626 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1205 506 305 69 20 chr4 81384503 81384707 -74245413 - Lx8 LINE L1 -365 7108 6895 5 1205 185 260 60 0 chr4 81385111 81385161 -74244959 + MIRb SINE MIR 125 177 -91 5 1205 396 0 0 0 chr4 81386478 81386522 -74243598 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1205 396 0 0 0 chr4 81386522 81386565 -74243555 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1205 523 267 103 4 chr4 81386592 81386855 -74243265 - L1MA9 LINE L1 -188 6124 5836 6 1205 1164 28 0 0 chr4 81386918 81387062 -74243058 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 6 1205 439 245 75 0 chr4 81387066 81387160 -74242960 - B1_Mus2 SINE Alu -38 109 9 6 1205 311 222 68 80 chr4 81387088 81387176 -74242944 - MT2B LTR ERVL -361 240 154 6 1205 735 261 87 18 chr4 81387201 81387533 -74242587 - L1MA9 LINE L1 -511 5801 5447 6 1205 256 318 45 0 chr4 81388003 81388091 -74242029 - BC1_Mm scRNA scRNA -58 94 3 6 1205 330 343 56 22 chr4 81388225 81388404 -74241716 + MER58A DNA MER1_type 30 214 -10 6 1205 234 213 16 0 chr4 81388751 81388812 -74241308 + T-rich Low_complexity Low_complexity 1 62 0 6 1205 1162 95 6 6 chr4 81389241 81389421 -74240699 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 1205 346 95 15 31 chr4 81389423 81389488 -74240632 + (CCCCCT)n Simple_repeat Simple_repeat 2 65 0 6 1205 195 114 0 0 chr4 81390384 81390419 -74239701 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1205 459 0 0 0 chr4 81392163 81392214 -74237906 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1205 212 293 36 12 chr4 81392270 81392353 -74237767 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 6 1205 320 268 24 12 chr4 81392444 81392527 -74237593 - B4 SINE B4 -208 84 1 6 1205 240 375 9 0 chr4 81392718 81392830 -74237290 - MIR SINE MIR -2 260 148 6 1205 29 28 0 0 chr4 81393269 81393305 -74236815 + AT_rich Low_complexity Low_complexity 1 36 0 6 1205 474 296 5 73 chr4 81393832 81394108 -74236012 + L1M2 LINE L1 5523 5774 -468 6 1205 778 140 0 14 chr4 81394803 81394948 -74235172 + Lx LINE L1 6467 6609 -45 6 1205 488 132 9 0 chr4 81394965 81395071 -74235049 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1205 399 21 0 0 chr4 81395381 81395429 -74234691 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1206 244 333 113 10 chr4 81396339 81396436 -74233684 + MER20 DNA MER1_type 100 206 -13 6 1206 776 233 64 26 chr4 81397205 81397530 -74232590 - RMER20A LTR ERVK 0 516 137 6 1206 1081 260 59 84 chr4 81397702 81398059 -74232061 - MTE2a LTR MaLR -31 348 1 6 1206 288 0 0 0 chr4 81398284 81398316 -74231804 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1206 7773 30 6 4 chr4 81398373 81399346 -74230774 - L1Md_F2 LINE L1 -3 6579 5605 6 1206 4602 33 2 0 chr4 81399331 81399904 -74230216 + L1Md_F2 LINE L1 5039 5612 -271 6 1206 1307 173 66 4 chr4 81399925 81400152 -74229968 - MTC LTR MaLR -113 308 68 6 1206 500 196 18 0 chr4 81400170 81400282 -74229838 - RMER1C Other Other -1 1341 1228 6 1206 184 59 29 29 chr4 81400282 81400317 -74229803 + (CAA)n Simple_repeat Simple_repeat 1 35 0 6 1206 1137 177 8 46 chr4 81400331 81400591 -74229529 + RMER1C Other Other 934 1183 -159 6 1206 440 198 0 0 chr4 81400594 81400675 -74229445 - MTC LTR MaLR -340 81 1 6 1206 306 250 78 103 chr4 81401021 81401137 -74228983 - ORR1E LTR MaLR -233 126 9 6 1206 664 287 33 19 chr4 81401271 81401541 -74228579 - RLTR15 LTR ERVK -83 276 3 6 1206 3114 76 2 0 chr4 81401569 81401966 -74228154 + MTB LTR MaLR 3 400 0 6 1206 1982 191 173 7 chr4 81402014 81402760 -74227360 + Lx3C LINE L1 6069 6938 -38 6 1206 24 0 0 0 chr4 81402760 81402784 -74227336 + AT_rich Low_complexity Low_complexity 1 24 0 6 1206 302 288 33 25 chr4 81402784 81402905 -74227215 - L1M5 LINE L1 -1465 4681 4560 6 1206 246 121 0 17 chr4 81402983 81403043 -74227077 - L1_Mus2 LINE L1 0 6582 6521 6 1206 194 0 39 0 chr4 81403497 81403523 -74226597 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1206 564 355 8 4 chr4 81405047 81405299 -74224821 + Lx8 LINE L1 6279 6531 -942 6 1206 22 35 0 0 chr4 81405319 81405348 -74224772 + AT_rich Low_complexity Low_complexity 1 29 0 6 1206 438 273 125 48 chr4 81405506 81406146 -74223974 - L1ME1 LINE L1 -230 5949 5261 6 1206 362 319 17 8 chr4 81406238 81406355 -74223765 - PB1D7 SINE Alu 0 120 3 6 1206 256 267 206 71 chr4 81406355 81406379 -74223741 - ID_B1 SINE B4 0 224 65 6 1206 231 36 0 0 chr4 81406613 81406641 -74223479 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1206 248 312 15 88 chr4 81406661 81406798 -74223322 - ORR1D1 LTR MaLR -233 141 15 6 1206 183 156 0 0 chr4 81407895 81407927 -74222193 + T-rich Low_complexity Low_complexity 4 35 0 6 1206 715 158 29 36 chr4 81407930 81408068 -74222052 - B1_Mur4 SINE Alu 0 150 14 6 1206 221 180 494 0 chr4 81408191 81408280 -74221840 + B1_Mm SINE Alu 10 142 -5 6 1206 712 173 13 0 chr4 81408283 81408433 -74221687 + GA-rich Low_complexity Low_complexity 1 152 0 6 1206 265 125 18 18 chr4 81409422 81409479 -74220641 + GA-rich Low_complexity Low_complexity 2 58 0 6 1206 5100 41 3 0 chr4 81411294 81411909 -74218211 - L1Md_F2 LINE L1 -12 6570 5954 6 1206 325 0 0 43 chr4 81411920 81411967 -74218153 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1206 219 306 0 56 chr4 81412708 81412798 -74217322 + MIRc SINE MIR 72 156 -112 6 1206 222 37 0 0 chr4 81413029 81413056 -74217064 + (CCA)n Simple_repeat Simple_repeat 1 27 0 6 1206 439 250 33 59 chr4 81413596 81413749 -74216371 + RLTR14 LTR ERV1 227 375 -7 6 1206 768 313 52 49 chr4 81413755 81414202 -74215918 + RLTR14-int LTR ERV1 2 449 -4868 6 1206 246 32 0 0 chr4 81415034 81415065 -74215055 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1206 1219 117 11 0 chr4 81415863 81416043 -74214077 + RMER17B LTR ERVK 1 182 -776 6 1206 586 297 123 56 chr4 81416370 81416712 -74213408 - MLT1A0 LTR MaLR 0 365 1 6 1206 219 146 0 0 chr4 81417085 81417126 -74212994 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1206 228 35 0 0 chr4 81417305 81417334 -74212786 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 6 1206 613 274 23 9 chr4 81417456 81417670 -74212450 - L1M5 LINE L1 -368 5756 5540 6 1206 37734 29 1 7 chr4 81418366 81424761 -74205359 - L1Md_T LINE L1 0 6582 232 6 1206 7340 68 0 8 chr4 81424764 81426753 -74203367 - L1Md_Gf LINE L1 -3622 2264 196 6 1206 375 285 71 52 chr4 81426890 81427101 -74203019 + L2a LINE L2 3211 3425 -1 6 1206 331 314 68 110 chr4 81427705 81427941 -74202179 + Charlie8 DNA MER1_type 85 310 -2118 6 1206 270 263 41 31 chr4 81429307 81429405 -74200715 - L3 LINE CR1 -2289 2200 2102 6 1206 272 83 21 0 chr4 81430087 81430135 -74199985 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1206 278 321 36 36 chr4 81431223 81431388 -74198732 + AmnSINE1 SINE SINE 291 455 -120 6 1206 391 195 17 0 chr4 81432131 81432249 -74197871 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1206 1241 294 94 26 chr4 81432252 81432849 -74197271 + MER73 LTR ERVL 148 855 -46 6 1206 4339 122 74 6 chr4 81432925 81433604 -74196516 - RMER19A LTR ERVK -12 725 1 6 1206 365 261 176 13 chr4 81434673 81434832 -74195288 + MIRb SINE MIR 3 187 -81 6 1206 343 304 147 56 chr4 81435077 81435116 -74195004 - B3 SINE B2 0 216 184 6 1206 342 0 0 0 chr4 81435116 81435154 -74194966 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1206 343 304 147 56 chr4 81435154 81435257 -74194863 - B3 SINE B2 -33 183 63 6 1206 415 196 163 0 chr4 81435632 81435816 -74194304 - L1MA8 LINE L1 -4 6287 6074 6 1206 1613 269 42 30 chr4 81435896 81436490 -74193630 - Lx9 LINE L1 -725 6919 6319 6 1206 456 265 57 29 chr4 81436648 81436823 -74193297 + Lx9 LINE L1 6933 7112 -532 6 1206 443 302 43 8 chr4 81436872 81437106 -74193014 + Lx9 LINE L1 7225 7466 -178 6 1206 200 34 0 33 chr4 81437112 81437142 -74192978 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1206 1515 226 56 37 chr4 81438461 81438869 -74191251 + MTD LTR MaLR 4 419 0 6 1206 414 0 0 0 chr4 81438997 81439043 -74191077 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 6 1206 375 41 0 0 chr4 81439640 81439689 -74190431 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1206 258 362 65 28 chr4 81439790 81439898 -74190222 + MER21B LTR ERV1 8 119 -744 6 1206 206 241 0 0 chr4 81440135 81440189 -74189931 + A-rich Low_complexity Low_complexity 1 54 0 6 1206 694 343 76 45 chr4 81440308 81440662 -74189458 + MER21B LTR ERV1 189 553 -310 6 1206 420 274 112 70 chr4 81440676 81441033 -74189087 - RMER10A LTR ERVL -10 432 61 6 1206 564 15 0 0 chr4 81441058 81441123 -74188997 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 6 1206 226 328 265 6 chr4 81441124 81441305 -74188815 + MER21B LTR ERV1 575 802 -61 6 1206 1200 48 0 14 chr4 81441388 81441536 -74188584 + B1_Mm SINE Alu 1 146 -1 6 1206 26 30 0 0 chr4 81441815 81441848 -74188272 + AT_rich Low_complexity Low_complexity 1 33 0 6 1206 2505 67 24 0 chr4 81441858 81442187 -74187933 + L1_Mus1 LINE L1 6224 6560 -7 6 1206 453 62 0 0 chr4 81442375 81442440 -74187680 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1206 288 0 0 0 chr4 81442440 81442471 -74187649 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1206 2857 285 59 74 chr4 81442481 81443558 -74186562 - Lx7 LINE L1 -416 7280 6195 6 1206 207 69 0 0 chr4 81443558 81443587 -74186533 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1206 2857 285 59 74 chr4 81443587 81443863 -74186257 - Lx7 LINE L1 -1502 6194 5947 6 1206 1016 192 22 58 chr4 81443891 81444168 -74185952 - Lx7 LINE L1 -328 5552 5286 6 1206 3366 155 33 18 chr4 81444190 81444796 -74185324 - Lx4B LINE L1 -5 7053 6439 6 1206 677 55 0 0 chr4 81444846 81444937 -74185183 + L1_Mm LINE L1 5001 5091 -792 6 1206 2077 61 0 4 chr4 81444938 81445219 -74184901 + L1_Mm LINE L1 5043 5322 -561 6 1206 32907 36 20 13 chr4 81445220 81449662 -74180458 + L1Md_A LINE L1 391 4919 -964 6 1206 228 183 46 77 chr4 81449662 81449727 -74180393 - RMER20A LTR ERVK -268 248 186 6 1206 32907 36 20 13 chr4 81449727 81450379 -74179741 + L1Md_A LINE L1 4920 5585 -298 6 1206 8126 45 3 0 chr4 81450380 81451373 -74178747 + L1Md_T LINE L1 5587 6582 0 6 1206 1987 70 0 18 chr4 81451373 81451651 -74178469 + L1Md_F2 LINE L1 5314 5586 -297 6 1206 7444 79 9 4 chr4 81451652 81452642 -74177478 + L1Md_F2 LINE L1 5588 6582 0 6 1206 1066 260 81 17 chr4 81453093 81453441 -74176679 - ORR1D2 LTR MaLR 0 370 1 6 1206 2241 234 54 19 chr4 81453612 81454355 -74175765 - L1MC4a LINE L1 -167 7715 6947 6 1206 528 111 0 182 chr4 81454659 81454802 -74175318 + Lx LINE L1 6538 6654 0 7 1206 1185 95 0 0 chr4 81454809 81454978 -74175142 + (GAA)n Simple_repeat Simple_repeat 3 171 0 7 1206 33858 76 20 12 chr4 81454988 81461307 -74168813 + L1Md_F3 LINE L1 221 6567 -20 7 1206 302 289 48 32 chr4 81461477 81461602 -74168518 + L1MA9 LINE L1 2200 2326 -3820 7 1206 1003 325 35 21 chr4 81461718 81462233 -74167887 + Lx8 LINE L1 6596 7117 -356 7 1206 200 105 105 0 chr4 81462355 81462507 -74167613 + GA-rich Low_complexity Low_complexity 5 172 0 7 1206 570 161 0 0 chr4 81462552 81462707 -74167413 + GA-rich Low_complexity Low_complexity 2 156 0 7 1206 298 308 78 23 chr4 81462707 81462926 -74167194 + Lx8 LINE L1 7214 7444 -29 7 1206 5101 112 4 1 chr4 81462987 81463771 -74166349 - L1_Mur2 LINE L1 -121 5756 4971 7 1206 1128 235 11 15 chr4 81463768 81464036 -74166084 + Lx4A LINE L1 6783 7049 -9 7 1206 369 43 0 0 chr4 81464202 81464249 -74165871 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1206 688 311 125 70 chr4 81464250 81464721 -74165399 - MLT1D LTR MaLR -8 497 1 7 1206 488 129 10 0 chr4 81465863 81465964 -74164156 + (TA)n Simple_repeat Simple_repeat 2 103 0 7 1206 1107 272 117 47 chr4 81466141 81467222 -74162898 + L1MA9 LINE L1 4203 5394 -918 7 1206 441 0 0 0 chr4 81467222 81467271 -74162849 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1206 1107 277 169 19 chr4 81467271 81468045 -74162075 + L1MA9 LINE L1 5395 6307 -5 7 1206 547 294 22 0 chr4 81468448 81468584 -74161536 - B1F1 SINE Alu 0 149 11 7 1206 211 214 0 0 chr4 81469989 81470031 -74160089 + ID4_ SINE ID 8 49 -34 7 1206 330 233 234 26 chr4 81470664 81470818 -74159302 - B3A SINE B2 -11 187 2 7 1206 594 28 0 0 chr4 81471081 81471153 -74158967 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1206 270 0 0 0 chr4 81471171 81471201 -74158919 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1206 307 141 56 0 chr4 81471981 81472052 -74158068 + CT-rich Low_complexity Low_complexity 3 77 0 7 1206 870 243 24 19 chr4 81472932 81473138 -74156982 + B3 SINE B2 8 214 -2 7 1206 756 264 12 6 chr4 81473573 81473741 -74156379 + ID_B1 SINE B4 1 169 -55 7 1206 498 33 0 0 chr4 81473767 81473827 -74156293 + (AAATG)n Simple_repeat Simple_repeat 4 63 0 7 1206 292 411 0 26 chr4 81473915 81474030 -74156090 + RSINE1 SINE B4 45 156 -9 7 1206 644 36 12 0 chr4 81474438 81474521 -74155599 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1206 245 29 0 29 chr4 81475785 81475820 -74154300 + (CAA)n Simple_repeat Simple_repeat 3 36 0 7 1206 244 345 119 59 chr4 81476064 81476317 -74153803 - MLT1I LTR MaLR -109 302 35 7 1206 1221 196 92 4 chr4 81477123 81477394 -74152726 - MTD LTR MaLR 0 419 125 7 1206 7413 70 20 1 chr4 81477411 81478435 -74151685 + L1_Mus3 LINE L1 5589 6632 -6 7 1206 630 194 0 0 chr4 81478461 81478569 -74151551 - MTD LTR MaLR -299 120 13 7 1206 346 316 136 34 chr4 81479464 81479832 -74150288 - MLT1A0 LTR MaLR -18 390 1 7 1206 186 43 0 0 chr4 81480029 81480052 -74150068 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1206 212 147 0 0 chr4 81480053 81480087 -74150033 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 7 1206 571 248 82 18 chr4 81480868 81481196 -74148924 + L1MEc LINE L1 733 1081 -5319 7 1206 422 297 48 21 chr4 81481367 81481832 -74148288 + L1MEc LINE L1 2224 2703 -3616 7 1206 217 333 13 0 chr4 81481852 81481927 -74148193 + ID4 SINE ID 6 81 -2 7 1206 356 304 106 12 chr4 81481956 81482212 -74147908 + L1MEc LINE L1 2716 2995 -3324 7 1206 29 28 0 0 chr4 81482269 81482305 -74147815 + AT_rich Low_complexity Low_complexity 1 36 0 7 1206 624 245 51 36 chr4 81482422 81482617 -74147503 - B3A SINE B2 0 198 1 7 1206 6503 54 2 0 chr4 81483853 81484702 -74145418 - L1Md_F2 LINE L1 0 6582 5732 7 1206 495 107 0 0 chr4 81484786 81484861 -74145259 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 7 1206 921 32 8 16 chr4 81484872 81484999 -74145121 + (GAGAA)n Simple_repeat Simple_repeat 3 128 0 7 1206 831 93 0 0 chr4 81484999 81485116 -74145004 + (GGAA)n Simple_repeat Simple_repeat 1 118 0 7 1206 1091 255 40 25 chr4 81485290 81485688 -74144432 - CR1_Mam LINE CR1 -1258 946 543 7 1206 391 369 58 40 chr4 81486169 81486395 -74143725 - MLT1H LTR MaLR -165 384 155 7 1206 232 293 20 0 chr4 81488247 81488346 -74141774 - L1MA6 LINE L1 -130 6170 6070 7 1206 427 278 115 30 chr4 81489114 81489187 -74140933 - Lx8 LINE L1 -469 7004 6908 7 1206 2570 82 14 0 chr4 81489187 81489540 -74140580 - L1Md_F2 LINE L1 -12 6570 6213 7 1206 427 278 115 30 chr4 81489540 81489700 -74140420 - Lx8 LINE L1 -566 6907 6751 7 1206 227 208 38 25 chr4 81490219 81490298 -74139822 - L1MD1 LINE L1 -268 5974 5895 7 1206 291 228 14 62 chr4 81490315 81490466 -74139654 + L1MD LINE L1 5654 5797 -445 7 1206 343 255 128 45 chr4 81490509 81490665 -74139455 - L1MDa LINE L1 -3794 2743 2575 7 1206 12273 49 4 1 chr4 81490666 81492997 -74137123 - L1Md_F2 LINE L1 -3 6579 4240 7 1206 351 262 91 30 chr4 81493007 81493172 -74136948 - L1MDa LINE L1 -4061 2572 2398 7 1206 228 67 0 0 chr4 81493221 81493251 -74136869 + (CAGAGA)n Simple_repeat Simple_repeat 2 31 0 7 1206 738 285 72 25 chr4 81493574 81494133 -74135987 - L1M2 LINE L1 -2333 3810 3205 7 1206 474 18 0 0 chr4 81494136 81494191 -74135929 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 7 1206 605 208 87 0 chr4 81494198 81494347 -74135773 + Lx4A LINE L1 6885 7046 -12 7 1206 360 59 0 0 chr4 81494348 81494399 -74135721 + (CAAT)n Simple_repeat Simple_repeat 2 52 0 7 1206 342 273 49 16 chr4 81494505 81494628 -74135492 - L1M2 LINE L1 -2932 3211 3085 7 1206 486 315 51 29 chr4 81494640 81494954 -74135166 - L1M2 LINE L1 -3401 2742 2422 7 1206 534 254 27 27 chr4 81495296 81495442 -74134678 + B1_Mur1 SINE Alu 3 148 -1 7 1206 234 180 0 0 chr4 81495462 81495523 -74134597 + (ATG)n Simple_repeat Simple_repeat 2 62 0 7 1206 1563 105 4 4 chr4 81495538 81495777 -74134343 + L1Md_F LINE L1 274 512 -6007 7 1206 1534 138 0 16 chr4 81495777 81496027 -74134093 + L1Md_F2 LINE L1 6325 6570 -12 7 1206 184 382 0 13 chr4 81496625 81496702 -74133418 - MIRc SINE MIR -133 135 60 7 1206 583 267 16 54 chr4 81496849 81497035 -74133085 - B3A SINE B2 -16 182 4 7 1206 246 32 0 0 chr4 81497048 81497079 -74133041 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1206 1088 97 0 0 chr4 81497079 81497224 -74132896 - B1_Mus1 SINE Alu -2 146 2 7 1206 411 21 0 0 chr4 81497335 81497383 -74132737 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1206 1607 202 29 16 chr4 81497398 81497710 -74132410 + MTD LTR MaLR 1 316 -103 7 1206 610 270 127 15 chr4 81497715 81498039 -74132081 - L1M3 LINE L1 -942 5198 4839 7 1206 267 203 47 0 chr4 81498176 81498240 -74131880 - L1M3 LINE L1 -1501 4639 4573 7 1206 1017 85 0 0 chr4 81498325 81498466 -74131654 + (TTC)n Simple_repeat Simple_repeat 1 141 0 7 1206 428 336 30 22 chr4 81498503 81498637 -74131483 - RSINE1 SINE B4 -20 145 11 7 1206 352 293 51 94 chr4 81498642 81498967 -74131153 - L1M3 LINE L1 -1688 4458 4162 7 1206 1861 248 55 10 chr4 81499007 81499695 -74130425 - L1M3 LINE L1 -2080 4060 3342 7 1206 441 36 0 0 chr4 81499698 81499753 -74130367 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1206 313 292 122 18 chr4 81499813 81499977 -74130143 - L1M3 LINE L1 -2964 3179 2999 7 1206 225 305 96 61 chr4 81500002 81500365 -74129755 - L1M3 LINE L1 -3205 2935 2560 1 1206 351 113 0 0 chr4 81500374 81500427 -74129693 + (CTA)n Simple_repeat Simple_repeat 1 53 0 2 1206 5401 40 12 0 chr4 81500612 81501266 -74128854 - L1Md_T LINE L1 0 6582 5921 3 1206 195 42 0 0 chr4 81501351 81501375 -74128745 + (TTA)n Simple_repeat Simple_repeat 1 24 0 4 1206 4213 66 0 7 chr4 81501375 81501941 -74128179 - L1Md_F2 LINE L1 -23 6559 5998 5 1206 299 116 0 0 chr4 81501928 81501971 -74128149 + L1_Mm LINE L1 1293 1335 -4548 6 1206 269 26 26 0 chr4 81502319 81502357 -74127763 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1206 1122 83 14 0 chr4 81502357 81502501 -74127619 - B1_Mus1 SINE Alu -2 146 1 8 1206 247 276 56 7 chr4 81503536 81503678 -74126442 + L1MDa LINE L1 32 180 -6453 9 1206 377 267 52 5 chr4 81504168 81504360 -74125760 + L1MDa LINE L1 2189 2389 -4244 9 1206 189 0 0 0 chr4 81505440 81505461 -74124659 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 1 1206 382 292 45 50 chr4 81505463 81505665 -74124455 - B3 SINE B2 -14 202 2 1 1206 549 278 14 7 chr4 81505896 81506041 -74124079 - B1_Mur2 SINE Alu -1 148 3 1 1206 243 344 33 0 chr4 81507156 81507355 -74122765 + L1_Mur3 LINE L1 1583 1783 -2131 1 1206 32690 81 12 1 chr4 81507430 81513612 -74116508 - L1Md_F2 LINE L1 -2 6580 328 1 1206 252 297 0 62 chr4 81513835 81513932 -74116188 + RMER1B Other Other 61 151 -915 1 1206 735 202 70 28 chr4 81513980 81514194 -74115926 + RMER1B Other Other 830 1052 -14 1 1206 249 341 23 23 chr4 81514200 81514287 -74115833 - MIRc SINE MIR -90 178 92 1 1206 409 393 0 0 chr4 81514602 81514737 -74115383 - RSINE1 SINE B4 -28 137 3 1 1206 423 132 0 0 chr4 81514738 81514806 -74115314 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1206 330 363 79 32 chr4 81515586 81515792 -74114328 - MLT1B LTR MaLR 0 390 171 2 1206 546 43 0 0 chr4 81515792 81515861 -74114259 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1206 330 363 79 32 chr4 81515861 81515996 -74114124 - MLT1B LTR MaLR -220 170 33 2 1206 3316 197 85 3 chr4 81516551 81517212 -74112908 - RMER13A LTR ERVK 0 860 146 2 1206 1577 65 0 9 chr4 81517244 81517461 -74112659 - L1_Mus3 LINE L1 -789 5849 5635 2 1206 613 81 20 0 chr4 81517462 81517561 -74112559 + L1_Mus3 LINE L1 6535 6635 -3 2 1206 671 251 35 12 chr4 81517571 81517740 -74112380 - RMER13A LTR ERVK -730 178 6 2 1206 23 54 0 0 chr4 81519292 81519329 -74110791 + AT_rich Low_complexity Low_complexity 1 37 0 2 1206 7846 36 10 0 chr4 81519329 81520624 -74109496 - L1Md_A LINE L1 0 6582 5273 2 1206 39324 5 0 0 chr4 81520593 81526320 -74103800 - L1Md_A LINE L1 0 6582 854 2 1206 764 30 0 0 chr4 81526312 81526411 -74103709 - L1Md_A LINE L1 -6192 532 434 2 150 7036 28 66 62 chr4 81526404 81526801 -74103319 - L1_Mm LINE L1 -554 5329 4906 2 1207 228 183 46 77 chr4 81526801 81526866 -74103254 + RMER20A LTR ERVK 186 248 -268 2 1207 7036 28 66 62 chr4 81526866 81527448 -74102672 - L1_Mm LINE L1 -554 4905 4282 2 1207 197 169 157 71 chr4 81527470 81527540 -74102580 - L4 LINE RTE -395 1634 1559 2 1207 13387 91 14 11 chr4 81527571 81530470 -74099650 - L1VL2 LINE L1 -628 2987 82 3 1207 723 331 84 78 chr4 81531801 81531855 -74098265 - MLT1A0 LTR MaLR -6 359 311 3 1207 710 212 7 20 chr4 81531855 81532004 -74098116 - B1_Mur1 SINE Alu 0 149 3 3 1207 723 331 84 78 chr4 81532004 81532306 -74097814 - MLT1A0 LTR MaLR -55 310 1 3 1207 883 303 34 22 chr4 81533177 81533585 -74096535 + L1_Rod LINE L1 1902 2314 -3533 3 1207 26324 3 0 0 chr4 81533594 81537395 -74092725 - L1Md_A LINE L1 0 6582 2783 3 1207 1484 272 89 81 chr4 81537387 81537662 -74092458 + L1_Rod LINE L1 2303 2551 -3296 3 1207 3188 66 2 0 chr4 81537662 81538057 -74092063 - MTA_Mm LTR MaLR 0 396 1 3 1207 1484 272 89 81 chr4 81538057 81538984 -74091136 + L1_Rod LINE L1 2552 3515 -2332 3 1207 689 103 16 16 chr4 81539239 81539367 -74090753 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 1207 2045 325 55 25 chr4 81539378 81539900 -74090220 + Lx8 LINE L1 6209 6737 -736 3 1207 1306 89 0 11 chr4 81539900 81540082 -74090038 - B2_Mm2 SINE B2 -15 180 1 3 1207 2045 325 55 25 chr4 81540082 81540550 -74089570 + Lx8 LINE L1 6738 7229 -244 3 1207 764 115 0 8 chr4 81540569 81540692 -74089428 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 3 1207 1462 197 138 19 chr4 81541299 81541662 -74088458 - MTD LTR MaLR -2 417 12 4 1207 186 43 0 0 chr4 81542407 81542430 -74087690 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1207 243 0 0 0 chr4 81542589 81542616 -74087504 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1207 1295 67 11 0 chr4 81542616 81542794 -74087326 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1207 336 252 2 33 chr4 81543161 81543281 -74086839 + L1ME3 LINE L1 6016 6130 -43 4 1207 239 343 111 38 chr4 81543428 81543716 -74086404 - L4 LINE RTE -97 1932 1624 4 1207 456 135 0 0 chr4 81545354 81545428 -74084692 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1207 447 325 26 61 chr4 81546698 81547042 -74083078 - L1MC1 LINE L1 -127 6206 5875 4 1207 291 269 15 0 chr4 81547080 81547147 -74082973 - ID4_ SINE ID -6 77 10 4 1207 1000 282 90 15 chr4 81547149 81547718 -74082402 - L1MC1 LINE L1 -467 5877 5270 4 1207 713 185 6 0 chr4 81547808 81547986 -74082134 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1207 514 81 14 0 chr4 81547986 81548060 -74082060 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1207 297 0 0 0 chr4 81548072 81548105 -74082015 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1207 21 0 0 0 chr4 81548128 81548149 -74081971 + AT_rich Low_complexity Low_complexity 1 21 0 5 1207 36228 30 0 0 chr4 81548269 81554820 -74075300 - L1Md_T LINE L1 0 6585 1 5 1207 1015 245 18 33 chr4 81554823 81555201 -74074919 - MT2A LTR ERVL -70 531 1 5 1207 248 254 93 36 chr4 81555203 81555342 -74074778 - L1MC1 LINE L1 -902 5244 5098 4 1207 396 0 0 0 chr4 81555415 81555459 -74074661 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1207 508 364 55 59 chr4 81555461 81555680 -74074440 - B4A SINE B4 -59 233 16 5 1207 248 141 0 30 chr4 81555702 81555768 -74074352 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 5 1207 324 102 0 0 chr4 81555768 81555817 -74074303 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1207 413 223 95 80 chr4 81555833 81556096 -74074024 - L1MC1 LINE L1 -1578 4568 4302 4 1207 292 214 35 12 chr4 81556093 81556178 -74073942 - L1MC1 LINE L1 -3024 3122 3036 4 1207 342 0 0 0 chr4 81556719 81556757 -74073363 + (CAATA)n Simple_repeat Simple_repeat 2 39 0 5 1207 237 65 0 0 chr4 81556757 81556787 -74073333 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 6 1207 208 266 68 102 chr4 81557245 81557333 -74072787 + MIR SINE MIR 91 175 -87 6 1207 573 299 75 72 chr4 81557422 81557743 -74072377 + ORR1E LTR MaLR 18 339 -20 6 1207 405 350 52 26 chr4 81558521 81558712 -74071408 - MER63A DNA AcHobo -9 201 6 6 1207 22 0 0 0 chr4 81559936 81559958 -74070162 + AT_rich Low_complexity Low_complexity 1 22 0 6 1207 1071 112 0 0 chr4 81561517 81561678 -74068442 + (TA)n Simple_repeat Simple_repeat 1 161 0 6 1207 262 307 118 28 chr4 81562236 81562380 -74067740 - MIRb SINE MIR -15 253 97 6 1207 1239 212 150 22 chr4 81562461 81562822 -74067298 - Lx5 LINE L1 0 7050 6644 6 1207 1346 187 0 0 chr4 81562830 81563076 -74067044 + Lx4B LINE L1 6399 6644 -414 6 1207 352 321 115 74 chr4 81563149 81563472 -74066648 - ORR1E LTR MaLR -23 336 1 6 1207 557 14 14 0 chr4 81563506 81563576 -74066544 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1207 261 0 0 0 chr4 81564096 81564125 -74065995 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1207 642 311 30 30 chr4 81564131 81564396 -74065724 + Lx9 LINE L1 6389 6653 -991 7 1207 539 165 12 0 chr4 81564420 81564505 -74065615 + 5S rRNA rRNA 5 90 -31 7 1207 279 146 0 0 chr4 81564518 81564566 -74065554 + Lx9 LINE L1 6689 6736 -908 7 1207 880 285 62 24 chr4 81564613 81564904 -74065216 + MTE2b LTR MaLR 75 376 -3 7 1207 438 329 84 59 chr4 81564911 81565269 -74064851 - L1ME3A LINE L1 -35 6138 5772 7 1207 8573 5 1 0 chr4 81565381 81566654 -74063466 - L1Md_A LINE L1 0 6582 5309 7 1207 7421 1 0 0 chr4 81566654 81567468 -74062652 - L1Md_A LINE L1 0 6582 5769 7 1207 21 57 0 0 chr4 81568561 81568596 -74061524 + AT_rich Low_complexity Low_complexity 1 35 0 7 1207 433 271 139 50 chr4 81569395 81569604 -74060516 + L1MC3 LINE L1 7148 7372 -413 7 1207 459 0 0 0 chr4 81569604 81569655 -74060465 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1207 432 0 0 0 chr4 81569655 81569702 -74060418 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 1207 433 271 139 50 chr4 81569702 81569989 -74060131 + L1MC3 LINE L1 7373 7687 -98 7 1207 226 185 0 44 chr4 81571539 81571607 -74058513 + GA-rich Low_complexity Low_complexity 1 65 0 8 1207 209 57 29 0 chr4 81573900 81573935 -74056185 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 8 1207 198 191 0 0 chr4 81575246 81575288 -74054832 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 8 1207 33 0 0 0 chr4 81575459 81575492 -74054628 + AT_rich Low_complexity Low_complexity 1 33 0 8 1207 264 77 0 0 chr4 81575511 81575550 -74054570 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 8 1207 1443 272 20 0 chr4 81576319 81576665 -74053455 - ORR1D2 LTR MaLR -12 358 6 8 1207 247 314 68 10 chr4 81576897 81577000 -74053120 - MIRb SINE MIR -147 121 13 8 1207 366 288 41 41 chr4 81577028 81577362 -74052758 + L1M5 LINE L1 3493 3843 -2303 8 1207 24 0 0 0 chr4 81577533 81577557 -74052563 + AT_rich Low_complexity Low_complexity 1 24 0 9 1207 3261 51 0 7 chr4 81579132 81579545 -74050575 + L1Md_F2 LINE L1 6164 6573 -9 9 1207 1114 234 87 103 chr4 81581127 81581292 -74048828 - MTE2a LTR MaLR -14 365 193 9 1207 612 38 0 0 chr4 81581292 81581371 -74048749 + (CTTG)n Simple_repeat Simple_repeat 3 81 0 9 1207 1114 234 87 103 chr4 81581371 81581572 -74048548 - MTE2a LTR MaLR -187 192 5 9 1207 948 267 104 15 chr4 81581715 81582042 -74048078 + MTEa LTR MaLR 18 373 -6 9 1207 371 319 0 0 chr4 81582973 81583089 -74047031 - PB1D10 SINE Alu 0 117 2 9 1207 21 0 0 0 chr4 81586819 81586840 -74043280 + AT_rich Low_complexity Low_complexity 1 21 0 9 1207 726 197 0 0 chr4 81586880 81587032 -74043088 + (CATATA)n Simple_repeat Simple_repeat 5 156 0 9 1207 346 240 26 3 chr4 81587097 81587233 -74042887 + L1M5 LINE L1 5346 5486 -678 9 1207 334 337 60 40 chr4 81587498 81587699 -74042421 + MLT1D LTR MaLR 125 329 -176 9 1207 887 179 122 19 chr4 81587779 81587984 -74042136 - URR1A DNA MER1_type 0 226 1 1 1207 750 23 0 0 chr4 81589103 81589191 -74040929 + (GAA)n Simple_repeat Simple_repeat 3 90 0 1 1207 1256 278 38 36 chr4 81589510 81589875 -74040245 + ORR1D2 LTR MaLR 5 370 0 1 1207 226 127 61 45 chr4 81589920 81589986 -74040134 + T-rich Low_complexity Low_complexity 4 70 0 1 1207 985 168 32 16 chr4 81589992 81590180 -74039940 + ORR1D2-int LTR MaLR 49 239 -1131 1 1207 454 244 122 4 chr4 81590222 81590373 -74039747 + ORR1D2-int LTR MaLR 1220 1527 -53 1 1207 1129 269 68 6 chr4 81590373 81590725 -74039395 + ORR1D2 LTR MaLR 1 374 0 1 1207 223 337 128 0 chr4 81591237 81591323 -74038797 + L2a LINE L2 3309 3405 -21 1 1207 595 248 165 0 chr4 81591702 81591932 -74038188 + ORR1D2 LTR MaLR 1 268 -102 1 1207 1746 199 53 100 chr4 81591951 81592460 -74037660 - RLTR20C LTR ERVK -49 485 1 1 1207 624 172 8 17 chr4 81592460 81592568 -74037552 + ORR1D2 LTR MaLR 264 370 0 1 1207 1335 275 40 25 chr4 81592811 81593210 -74036910 + MTD LTR MaLR 3 407 -12 1 1207 406 259 54 0 chr4 81593221 81593333 -74036787 + MTD-int LTR MaLR 1 118 -1140 1 1207 846 129 0 0 chr4 81593380 81593496 -74036624 - B2_Mm2 SINE B2 -78 117 2 1 1207 323 164 0 0 chr4 81593518 81593579 -74036541 - Lx5 LINE L1 -6 7044 6984 1 1207 1799 271 86 98 chr4 81593606 81594560 -74035560 + MTD-int LTR MaLR 149 1091 -7 1 1207 210 105 0 0 chr4 81594601 81594639 -74035481 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1207 301 265 19 56 chr4 81594653 81594761 -74035359 + MTD LTR MaLR 1 104 -303 1 1207 475 304 105 6 chr4 81595058 81595220 -74034900 - MTEa LTR MaLR -201 178 1 1 1207 1264 275 54 33 chr4 81595260 81595595 -74034525 + MTE2b LTR MaLR 18 359 -20 1 1207 2622 174 37 46 chr4 81598031 81598620 -74031500 - RMER6C LTR ERVK -106 584 1 1 1207 362 319 122 57 chr4 81598798 81599192 -74030928 + MLT1B LTR MaLR 42 457 -10 1 1207 831 106 0 0 chr4 81599400 81599542 -74030578 + (GA)n Simple_repeat Simple_repeat 1 142 0 1 1207 1853 188 39 11 chr4 81599655 81600010 -74030110 - ORR1B2 LTR MaLR -2 365 1 1 1207 667 291 79 10 chr4 81600518 81600861 -74029259 + Lx5 LINE L1 5964 6363 -687 1 1207 985 320 71 49 chr4 81600887 81601397 -74028723 + Lx5 LINE L1 6506 7026 -24 1 1207 1624 37 0 0 chr4 81601495 81601683 -74028437 + B2_Mm1a SINE B2 1 188 -5 1 1207 196 243 54 54 chr4 81601799 81601873 -74028247 + L4 LINE RTE 1401 1474 -555 1 1207 243 133 16 48 chr4 81602150 81602213 -74027907 + T-rich Low_complexity Low_complexity 5 65 0 1 1207 847 161 49 0 chr4 81602216 81602359 -74027761 - B1_Mur4 SINE Alu 0 150 1 1 1207 634 269 60 16 chr4 81602445 81602630 -74027490 - B3A SINE B2 -4 194 2 1 1207 377 126 26 35 chr4 81606343 81606458 -74023662 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 1 1207 230 296 29 67 chr4 81610590 81610695 -74019425 - MER5A DNA MER1_type -57 132 32 1 1207 27 0 0 0 chr4 81610828 81610855 -74019265 + AT_rich Low_complexity Low_complexity 1 27 0 1 1207 251 112 10 73 chr4 81610891 81610987 -74019133 + A-rich Low_complexity Low_complexity 2 91 0 1 1207 234 0 0 0 chr4 81611591 81611617 -74018503 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1207 286 275 73 9 chr4 81613853 81613963 -74016157 + PB1D10 SINE Alu 1 117 0 1 1207 766 196 21 7 chr4 81614684 81614828 -74015292 - RSINE1 SINE B4 -17 148 3 1 1207 459 0 0 0 chr4 81615072 81615123 -74014997 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1207 441 0 0 0 chr4 81615123 81615171 -74014949 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1207 237 65 0 0 chr4 81615238 81615269 -74014851 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1207 189 0 0 0 chr4 81617003 81617024 -74013096 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1207 1019 294 59 43 chr4 81617119 81617196 -74012924 + MLT1C LTR MaLR 23 98 -369 1 1207 1011 139 0 0 chr4 81617196 81617362 -74012758 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 1207 1019 294 59 43 chr4 81617362 81617722 -74012398 + MLT1C LTR MaLR 99 466 -1 1 1207 340 401 33 11 chr4 81618307 81618491 -74011629 + LTR16A LTR ERVL 3 190 -261 1 1207 1316 176 0 5 chr4 81618829 81619052 -74011068 + URR1B DNA MER1_type 1 222 -3 1 1207 561 30 0 0 chr4 81619242 81619309 -74010811 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1207 201 39 0 0 chr4 81619310 81619336 -74010784 + (CAAGA)n Simple_repeat Simple_repeat 2 27 0 1 1207 24 0 0 0 chr4 81619916 81619940 -74010180 + AT_rich Low_complexity Low_complexity 1 24 0 1 1207 270 143 0 0 chr4 81620099 81620148 -74009972 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1207 593 320 134 6 chr4 81620691 81621027 -74009093 - MTEa LTR MaLR 0 379 1 1 1207 1637 207 78 13 chr4 81621185 81621582 -74008538 + ORR1B1-int LTR MaLR 240 662 -847 1 1207 5171 85 4 33 chr4 81621605 81622336 -74007784 - L1_Mus2 LINE L1 -9 6557 5848 1 1207 532 275 0 0 chr4 81622338 81622447 -74007673 + B1_Mus2 SINE Alu 13 121 -26 1 1207 240 261 0 124 chr4 81622371 81622476 -74007644 + RLTR25A LTR ERVK 522 613 -490 1 1207 5243 201 90 22 chr4 81622490 81624328 -74005792 - Lx7 LINE L1 -1326 6370 4399 1 1207 1389 214 72 9 chr4 81624323 81624756 -74005364 - Lx7 LINE L1 -6425 1303 844 1 1207 853 34 0 33 chr4 81626003 81626148 -74003972 - L1Md_F2 LINE L1 0 6582 6448 1 1207 592 321 51 101 chr4 81626387 81626782 -74003338 - MLT1B LTR MaLR -8 382 8 1 1207 1431 209 136 16 chr4 81626875 81627249 -74002871 + MTD LTR MaLR 1 419 0 1 1207 2885 253 56 53 chr4 81627261 81628138 -74001982 + MTC-int LTR MaLR 55 1015 -243 1 1207 265 333 0 64 chr4 81628248 81628357 -74001763 - LTR16A LTR ERVL -48 403 302 1 1207 880 285 83 21 chr4 81628521 81628847 -74001273 - ORR1E LTR MaLR -13 346 1 1 1207 21 0 0 0 chr4 81629024 81629045 -74001075 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 284 300 103 95 chr4 81629857 81630100 -74000020 + ORR1E LTR MaLR 19 263 -96 1 1207 1138 305 147 21 chr4 81630962 81631473 -73998647 + MLT2B3 LTR ERVL 117 710 -7 1 1207 636 143 16 8 chr4 81631999 81632126 -73997994 + GA-rich Low_complexity Low_complexity 3 130 0 1 1207 1132 281 25 18 chr4 81632192 81632475 -73997645 + B4A SINE B4 8 292 0 1 1207 267 190 0 0 chr4 81632475 81632533 -73997587 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1207 1332 48 0 0 chr4 81632910 81633078 -73997042 + (TCTCCC)n Simple_repeat Simple_repeat 5 172 0 1 1207 1433 241 77 3 chr4 81633174 81633511 -73996609 - MTEa LTR MaLR 0 379 18 1 1207 658 130 9 0 chr4 81633661 81633769 -73996351 + URR1B DNA MER1_type 115 223 -2 1 1207 269 266 75 38 chr4 81633769 81633796 -73996324 - CYRA11_Mm Unknown Y-chromosome -442 175 144 1 1207 293 374 46 41 chr4 81633818 81634013 -73996107 - ORR1E LTR MaLR -163 196 1 1 1207 191 42 104 0 chr4 81634058 81634106 -73996014 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1207 23 0 0 0 chr4 81634187 81634210 -73995910 + AT_rich Low_complexity Low_complexity 1 23 0 1 1207 31 44 0 0 chr4 81634295 81634340 -73995780 + AT_rich Low_complexity Low_complexity 1 45 0 1 1207 459 0 0 0 chr4 81636502 81636553 -73993567 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1 1207 181 286 36 0 chr4 81638578 81638634 -73991486 - MIRb SINE MIR -102 166 109 1 1207 21 0 0 0 chr4 81639201 81639222 -73990898 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 403 254 22 22 chr4 81639896 81640033 -73990087 - L1ME3B LINE L1 -264 5976 5840 1 1207 1762 92 27 4 chr4 81640850 81641113 -73989007 + L1_Mus3 LINE L1 6366 6634 -4 1 1207 252 0 0 0 chr4 81641244 81641272 -73988848 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1207 349 280 11 21 chr4 81641294 81641389 -73988731 - Tigger5 DNA MER2_type -2289 117 24 1 1207 588 284 51 6 chr4 81643719 81643875 -73986245 - RSINE1 SINE B4 0 165 3 1 1207 252 0 0 0 chr4 81644140 81644168 -73985952 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1207 471 267 22 15 chr4 81644168 81644305 -73985815 - B1F SINE Alu -11 138 1 1 1207 545 351 26 22 chr4 81644365 81644595 -73985525 - B4A SINE B4 -60 232 2 1 1207 229 288 0 15 chr4 81644680 81644747 -73985373 + (TATG)n Simple_repeat Simple_repeat 3 68 0 1 1207 602 143 0 29 chr4 81645393 81645530 -73984590 + CT-rich Low_complexity Low_complexity 3 135 0 1 1207 342 196 0 0 chr4 81646311 81646403 -73983717 + GA-rich Low_complexity Low_complexity 1 92 0 1 1207 207 0 0 0 chr4 81648327 81648350 -73981770 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1207 225 335 133 6 chr4 81648829 81648994 -73981126 + L1MB5 LINE L1 5945 6130 -44 1 1207 1245 212 130 12 chr4 81649161 81649491 -73980629 + ORR1D1 LTR MaLR 1 369 -5 1 1207 303 252 74 16 chr4 81650103 81650224 -73979896 - L1MB1 LINE L1 -246 5922 5795 1 1207 39123 9 0 0 chr4 81650281 81656857 -73973263 - L1Md_A LINE L1 0 6582 7 1 1207 234 216 21 132 chr4 81657053 81657197 -73972923 + MER63D DNA AcHobo 129 256 -805 1 1207 345 266 128 41 chr4 81657253 81657449 -73972671 + MER63D DNA AcHobo 787 999 -62 1 150 7633 41 0 0 chr4 81657532 81658772 -73971348 - L1Md_T LINE L1 0 6582 5343 1 1208 36670 9 1 7 chr4 81659078 81664248 -73965872 + L1Md_A LINE L1 459 5586 -297 1 1208 9080 2 0 0 chr4 81664248 81665244 -73964876 + L1Md_A LINE L1 5587 6582 0 1 1208 413 362 85 53 chr4 81665270 81665892 -73964228 + L1M5 LINE L1 3328 3969 -2177 1 1208 288 312 31 15 chr4 81665961 81666091 -73964029 + MER5A DNA MER1_type 4 135 -54 1 1208 244 219 46 15 chr4 81666300 81666365 -73963755 + Lx7 LINE L1 6298 6364 -1109 1 1208 1238 249 183 3 chr4 81666367 81666722 -73963398 - MTD LTR MaLR 0 419 1 1 1208 2024 320 34 27 chr4 81666746 81667680 -73962440 + Lx7 LINE L1 6440 7389 -84 1 1208 450 0 0 0 chr4 81667683 81667733 -73962387 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1208 22 0 0 0 chr4 81667829 81667851 -73962269 + AT_rich Low_complexity Low_complexity 1 22 0 1 1208 3493 291 92 23 chr4 81667885 81669102 -73961018 + Lx8 LINE L1 6172 7472 -1 1 1208 274 320 24 39 chr4 81669115 81669242 -73960878 + MER63C DNA AcHobo 2 126 -804 1 1208 591 288 120 0 chr4 81669473 81669657 -73960463 - MER58A DNA MER1_type -13 211 6 1 1208 497 303 54 70 chr4 81669703 81670001 -73960119 + MER63C DNA AcHobo 464 756 -174 1 1208 383 188 0 35 chr4 81670026 81670142 -73959978 + GA-rich Low_complexity Low_complexity 2 113 0 1 1208 719 141 5 48 chr4 81670156 81670342 -73959778 + GA-rich Low_complexity Low_complexity 3 180 0 1 1208 810 291 55 11 chr4 81670354 81670625 -73959495 + B4A SINE B4 2 284 -8 2 1208 309 200 189 0 chr4 81671424 81671514 -73958606 - L1M5 LINE L1 -685 5439 5333 2 1208 484 329 6 53 chr4 81671782 81671952 -73958168 + RSINE1 SINE B4 3 164 -1 2 1208 411 21 0 0 chr4 81671962 81672010 -73958110 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1208 190 333 48 0 chr4 81672158 81672221 -73957899 - MIRb SINE MIR -47 221 156 2 1208 241 265 56 71 chr4 81672501 81672627 -73957493 - MLT1J2 LTR MaLR -320 128 4 2 1208 198 26 0 71 chr4 81674103 81674145 -73955975 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 1208 1093 110 0 0 chr4 81674154 81674299 -73955821 - B1_Mus2 SINE Alu -2 145 1 2 1208 555 321 109 77 chr4 81675624 81676066 -73954054 - MER74B LTR ERVL -92 530 75 2 1208 537 236 23 38 chr4 81676099 81676231 -73953889 + MTEa LTR MaLR 250 379 0 2 1208 3360 263 76 15 chr4 81676231 81677141 -73952979 + MTEa-int LTR MaLR 1 966 -614 2 1208 241 152 0 21 chr4 81677141 81677188 -73952932 + MTD LTR MaLR 1 46 -375 2 1208 452 321 53 6 chr4 81677190 81677359 -73952761 + RLTR18B LTR ERVK 1 177 -335 2 1208 735 306 115 32 chr4 81677519 81677866 -73952254 + RLTR18B LTR ERVK 132 507 -5 2 1208 1550 260 16 19 chr4 81677871 81678247 -73951873 + MTD LTR MaLR 44 418 -1 2 1208 1998 288 42 48 chr4 81678248 81678869 -73951251 + MTEa-int LTR MaLR 962 1578 -2 2 1208 1292 257 109 0 chr4 81678873 81679204 -73950916 + MTEa LTR MaLR 6 372 -7 2 1208 279 0 0 0 chr4 81680956 81680987 -73949133 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1208 189 0 0 0 chr4 81682966 81682987 -73947133 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1208 191 232 68 55 chr4 81684297 81684370 -73945750 + L2 LINE L2 2438 2511 -908 2 1208 269 318 78 115 chr4 81684877 81685069 -73945051 + L2b LINE L2 3191 3375 0 2 1208 805 19 131 0 chr4 81685411 81685518 -73944602 + B1_Mus1 SINE Alu 20 140 -8 2 1208 538 90 0 0 chr4 81685562 81685640 -73944480 + L1_Mus3 LINE L1 6559 6636 -2 2 1208 207 245 40 20 chr4 81685943 81685993 -73944127 - L2b LINE L2 0 3375 3325 2 1208 995 278 146 23 chr4 81686059 81686450 -73943670 - LTR16A1 LTR ERVL -8 448 10 2 1208 261 330 0 0 chr4 81686706 81686797 -73943323 + ID_B1 SINE B4 124 214 -10 2 1208 36270 35 1 0 chr4 81687078 81692929 -73937191 + L1Md_T LINE L1 1 5589 -297 2 1208 9543 8 0 0 chr4 81692929 81693952 -73936168 + L1Md_T LINE L1 5590 6585 0 2 1208 1068 243 144 24 chr4 81694956 81695283 -73934837 + MTD LTR MaLR 6 372 -47 2 1208 1956 156 54 11 chr4 81695283 81695653 -73934467 + ORR1B1 LTR MaLR 1 386 -8 2 1208 216 119 16 33 chr4 81696382 81696443 -73933677 + T-rich Low_complexity Low_complexity 2 61 0 2 1208 29 0 0 0 chr4 81696572 81696601 -73933519 + AT_rich Low_complexity Low_complexity 1 29 0 2 1208 602 64 0 0 chr4 81696678 81696756 -73933364 + L1_Mus2 LINE L1 6489 6566 0 2 1208 729 286 18 41 chr4 81697396 81697615 -73932505 + B3A SINE B2 1 214 -2 2 1208 253 276 173 26 chr4 81697548 81697704 -73932416 - RLTR21 LTR ERVK -348 1224 1046 2 1208 688 215 130 87 chr4 81698255 81698566 -73931554 - MT2A LTR ERVL -160 315 16 2 1208 851 161 26 6 chr4 81698566 81698722 -73931398 + Lx LINE L1 6494 6652 -2 2 1208 378 178 34 197 chr4 81698722 81698753 -73931367 - MT2A LTR ERVL -586 15 1 2 1208 22 0 0 0 chr4 81699698 81699720 -73930400 + AT_rich Low_complexity Low_complexity 1 22 0 2 1208 258 278 108 18 chr4 81700076 81700201 -73929919 + MIR SINE MIR 5 139 -137 2 1208 42 57 0 0 chr4 81700350 81700420 -73929700 + AT_rich Low_complexity Low_complexity 1 70 0 2 1208 314 439 61 29 chr4 81700846 81701158 -73928962 - MER115 DNA Tip100 -265 428 107 2 1208 576 298 111 28 chr4 81701230 81701528 -73928592 - MLT1A0 LTR MaLR -6 461 39 2 1208 25 0 0 0 chr4 81702341 81702366 -73927754 + AT_rich Low_complexity Low_complexity 1 25 0 2 1208 441 0 0 0 chr4 81702580 81702629 -73927491 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1208 540 291 113 16 chr4 81703607 81703792 -73926328 - B4A SINE B4 -86 206 4 2 1208 198 318 17 76 chr4 81704125 81704244 -73925876 + MIRb SINE MIR 45 156 -112 2 1208 316 312 25 31 chr4 81704288 81704447 -73925673 - L1MC5 LINE L1 -50 7911 7754 2 1208 1188 88 0 13 chr4 81704469 81704618 -73925502 - B1_Mus1 SINE Alu -1 147 1 2 1208 1022 240 13 26 chr4 81705168 81705395 -73924725 + ORR1E LTR MaLR 1 224 -135 2 1208 1279 295 96 20 chr4 81705590 81706223 -73923897 - L1ME2z LINE L1 -356 6088 5406 2 1208 1673 284 47 14 chr4 81706223 81706737 -73923383 + MT2A LTR ERVL 3 533 0 2 1208 1279 280 63 84 chr4 81706737 81706976 -73923144 - L1ME2z LINE L1 -1039 5405 5171 2 1208 215 178 22 0 chr4 81707023 81707068 -73923052 - B4 SINE B4 -245 47 2 2 1208 359 266 60 28 chr4 81707133 81707315 -73922805 + L1ME1 LINE L1 1989 2176 -4066 2 1208 236 259 62 62 chr4 81707331 81707475 -73922645 + L1ME1 LINE L1 4623 4766 -1380 2 1208 320 350 90 27 chr4 81708058 81708357 -73921763 + L1ME1 LINE L1 5510 5827 -337 2 1208 347 255 50 20 chr4 81708488 81708588 -73921532 + L1ME1 LINE L1 6059 6161 -18 2 1208 2309 136 14 5 chr4 81709106 81709475 -73920645 - RLTR31A_Mm LTR ERVK -211 373 2 2 1208 4823 100 44 1 chr4 81709476 81710178 -73919942 - Lx3C LINE L1 -196 6780 6049 2 1208 349 330 0 0 chr4 81710181 81710278 -73919842 - Lx7 LINE L1 -1061 6635 6539 2 1208 266 311 24 24 chr4 81710318 81710443 -73919677 - MIR SINE MIR -46 216 92 2 1208 684 0 0 0 chr4 81712523 81712599 -73917521 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1208 1517 66 16 0 chr4 81712944 81713126 -73916994 - B2_Mm2 SINE B2 -6 189 5 2 1208 1422 216 53 24 chr4 81713259 81713633 -73916487 - Charlie5 DNA MER1_type -4 2620 2236 2 1208 250 207 0 0 chr4 81713638 81713696 -73916424 - Charlie5 DNA MER1_type -2502 122 65 2 1208 1557 137 17 0 chr4 81713832 81714066 -73916054 - Lx LINE L1 -2 6652 6415 2 1208 682 11 23 0 chr4 81714310 81714397 -73915723 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 1208 288 272 157 28 chr4 81714487 81714665 -73915455 + L1MA7 LINE L1 4122 4322 -1818 2 1208 671 333 13 48 chr4 81714706 81714933 -73915187 + B4A SINE B4 2 220 -72 2 1208 1971 286 119 27 chr4 81715103 81716771 -73913349 + L1MA7 LINE L1 4396 6234 -57 2 1208 390 74 0 0 chr4 81716925 81716979 -73913141 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1208 485 328 44 99 chr4 81718941 81719324 -73910796 - LTR40a LTR ERVL -18 444 83 2 1208 780 212 168 17 chr4 81719603 81719740 -73910380 - Lx7 LINE L1 0 7696 7541 2 1208 585 76 0 0 chr4 81719740 81719819 -73910301 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 2 1208 780 212 168 17 chr4 81719819 81719978 -73910142 - Lx7 LINE L1 -156 7540 7356 2 1208 1038 198 40 28 chr4 81720085 81720334 -73909786 - Lx7 LINE L1 0 7696 7445 2 1208 393 58 0 0 chr4 81720335 81720387 -73909733 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1208 6172 227 48 80 chr4 81720399 81722721 -73907399 - Lx7 LINE L1 -338 7358 5035 2 1208 1285 253 67 2 chr4 81722718 81723122 -73906998 - Lx7 LINE L1 -6948 780 351 2 1208 1843 172 0 6 chr4 81723216 81723544 -73906576 - ORR1A4 LTR MaLR -3 326 1 2 1208 645 14 0 0 chr4 81725412 81725486 -73904634 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1208 189 94 0 0 chr4 81725491 81725523 -73904597 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1208 22 0 0 0 chr4 81725561 81725583 -73904537 + AT_rich Low_complexity Low_complexity 1 22 0 2 1208 550 260 66 7 chr4 81727186 81727337 -73902783 - Lx8 LINE L1 -1063 6410 6251 2 1208 315 0 0 0 chr4 81727394 81727429 -73902691 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1208 524 331 59 7 chr4 81727438 81727590 -73902530 - B3A SINE B2 -38 160 1 2 1208 180 0 0 0 chr4 81728361 81728381 -73901739 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1208 681 95 0 0 chr4 81728381 81728496 -73901624 + (GA)n Simple_repeat Simple_repeat 2 117 0 2 1208 186 43 0 0 chr4 81729614 81729637 -73900483 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1208 414 0 0 0 chr4 81729746 81729792 -73900328 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1208 725 324 103 21 chr4 81730071 81730402 -73899718 - MLT1A0 LTR MaLR 0 365 8 2 1208 700 237 67 16 chr4 81732702 81732895 -73897225 + B3 SINE B2 1 203 -13 2 1208 609 257 14 0 chr4 81733276 81733416 -73896704 - B1_Mur3 SINE Alu -7 142 1 2 1208 1666 195 109 130 chr4 81733551 81733966 -73896154 - Lx7 LINE L1 0 7696 7355 2 1208 180 0 0 0 chr4 81733966 81733986 -73896134 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1208 1666 195 109 130 chr4 81733986 81734277 -73895843 - Lx7 LINE L1 -342 7354 7005 2 1208 2396 210 67 2 chr4 81734633 81735229 -73894891 - Lx9 LINE L1 -343 7301 6667 2 1208 236 77 0 25 chr4 81737778 81737818 -73892302 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1208 367 311 39 33 chr4 81737980 81738000 -73892120 + ID_B1 SINE B4 69 166 -58 2 1208 758 71 16 0 chr4 81738000 81738124 -73891996 + B1_Mus1 SINE Alu 8 137 -11 2 1208 208 323 21 0 chr4 81739331 81739427 -73890693 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1208 184 354 30 30 chr4 81739573 81739672 -73890448 - MIRb SINE MIR -125 143 45 2 1208 461 246 34 27 chr4 81739820 81739966 -73890154 - B1_Mur1 SINE Alu -1 148 2 2 1208 1005 201 67 0 chr4 81741001 81741195 -73888925 + B3 SINE B2 10 216 0 2 1208 4054 64 0 4 chr4 81741520 81742039 -73888081 + L1Md_F2 LINE L1 6065 6581 -1 2 1208 353 339 82 11 chr4 81742215 81742397 -73887723 + MER2 DNA MER2_type 151 345 0 2 1208 234 0 0 0 chr4 81744045 81744071 -73886049 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1208 387 0 0 0 chr4 81744371 81744414 -73885706 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1208 234 0 0 0 chr4 81745697 81745723 -73884397 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1208 3492 88 12 4 chr4 81746686 81747175 -73882945 + L1_Mus3 LINE L1 6140 6632 -6 2 1208 671 21 0 40 chr4 81747199 81747300 -73882820 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 2 1208 856 321 110 14 chr4 81747762 81748273 -73881847 + Lx8 LINE L1 6882 7441 -32 2 1208 2750 31 0 3 chr4 81748501 81748824 -73881296 + RLTRETN_Mm LTR ERVK 1 322 0 2 1208 4482 135 8 25 chr4 81749198 81750389 -73879731 + L1Md_A LINE L1 418 1590 -4293 2 1208 33692 67 3 16 chr4 81750399 81755728 -73874392 + L1Md_F LINE L1 550 5802 -81 2 1208 3352 67 2 0 chr4 81755728 81756160 -73873960 + L1Md_F2 LINE L1 6136 6568 -14 2 1208 585 42 0 0 chr4 81756160 81756232 -73873888 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1208 1342 272 125 19 chr4 81756392 81757201 -73872919 + L1M4c LINE L1 841 1735 -4649 3 1208 852 263 0 45 chr4 81757252 81757451 -73872669 + B3 SINE B2 4 193 -23 3 1208 510 284 151 22 chr4 81757560 81758049 -73872071 + L1M4c LINE L1 1942 2493 -3891 3 1208 285 308 9 63 chr4 81758293 81758404 -73871716 + RSINE1 SINE B4 59 163 -2 3 1208 417 39 0 0 chr4 81758438 81758489 -73871631 + (TAA)n Simple_repeat Simple_repeat 2 52 0 3 1208 606 234 75 59 chr4 81758489 81758675 -73871445 + B3A SINE B2 15 203 -13 3 1208 273 89 0 0 chr4 81758685 81758730 -73871390 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1208 24 0 0 0 chr4 81758730 81758754 -73871366 + AT_rich Low_complexity Low_complexity 1 24 0 3 1208 27 29 0 0 chr4 81758847 81758881 -73871239 + AT_rich Low_complexity Low_complexity 1 34 0 3 1208 245 298 91 51 chr4 81758885 81758906 -73871214 + L1M4c LINE L1 2735 2755 -3621 3 1208 1200 111 0 0 chr4 81758906 81759086 -73871034 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1208 245 298 91 51 chr4 81759086 81759537 -73870583 + L1M4c LINE L1 2756 3226 -3150 3 1208 322 276 0 124 chr4 81759559 81759720 -73870400 + L1M4c LINE L1 4292 4432 -1944 3 1208 338 224 54 40 chr4 81760080 81760229 -73869891 + L1M4c LINE L1 4900 5050 -1326 3 1208 311 323 40 8 chr4 81760258 81760383 -73869737 + L1M4c LINE L1 5120 5248 -1134 3 1208 306 284 11 54 chr4 81760802 81760895 -73869225 - RSINE1 SINE B4 -75 90 2 3 1208 298 281 119 38 chr4 81760920 81761160 -73868960 + L1M4c LINE L1 5410 5667 -752 3 1208 879 178 14 0 chr4 81761401 81761547 -73868573 - B1_Mur1 SINE Alu 0 149 2 3 1208 247 343 19 57 chr4 81761913 81762018 -73868102 - MTEa LTR MaLR -272 107 7 3 1208 1098 273 122 38 chr4 81762444 81762893 -73867227 + RMER5 LTR ERV1 33 519 -15 3 1208 21 0 0 0 chr4 81765533 81765554 -73864566 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 24 32 0 0 chr4 81766583 81766614 -73863506 + AT_rich Low_complexity Low_complexity 1 31 0 3 1208 643 239 54 30 chr4 81767636 81767804 -73862316 - B3A SINE B2 0 198 27 3 1208 276 30 0 0 chr4 81767804 81767837 -73862283 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1208 216 97 0 0 chr4 81768755 81768786 -73861334 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 1208 447 19 0 0 chr4 81768959 81769011 -73861109 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1208 371 335 57 24 chr4 81769015 81769226 -73860894 - MIRb SINE MIR -50 218 1 3 1208 467 102 11 0 chr4 81770164 81770252 -73859868 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 1208 199 240 24 118 chr4 81770656 81770741 -73859379 - MIRb SINE MIR -150 118 42 3 1208 883 185 138 5 chr4 81771048 81771177 -73858943 - URR1B DNA MER1_type -1 224 96 3 1208 2095 141 0 12 chr4 81771177 81771507 -73858613 - ORR1A3 LTR MaLR 0 326 1 3 1208 883 185 138 5 chr4 81771507 81771573 -73858547 - URR1B DNA MER1_type -130 95 3 3 1208 22 35 0 0 chr4 81772172 81772201 -73857919 + AT_rich Low_complexity Low_complexity 1 29 0 3 1208 354 132 0 0 chr4 81772208 81772284 -73857836 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1208 287 246 0 17 chr4 81772293 81772351 -73857769 - BC1_Mm scRNA scRNA -91 61 5 3 1208 1031 243 15 0 chr4 81772391 81772593 -73857527 + B3 SINE B2 2 206 -10 3 1208 564 15 0 0 chr4 81772660 81772725 -73857395 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 3 1208 1430 131 39 23 chr4 81773093 81773351 -73856769 - Lx2B LINE L1 -4 6996 6735 3 1208 456 19 0 0 chr4 81773527 81773580 -73856540 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1208 342 0 0 0 chr4 81773580 81773617 -73856503 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1208 1885 126 43 55 chr4 81773766 81774094 -73856026 + ORR1A3 LTR MaLR 3 326 0 3 1208 282 29 0 0 chr4 81774628 81774663 -73855457 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1208 331 316 0 0 chr4 81775107 81775183 -73854937 + ID2 SINE ID 6 81 -2 3 1208 375 359 78 60 chr4 81775488 81775835 -73854285 + L2c LINE L2 3027 3379 -8 3 1208 296 292 91 35 chr4 81776171 81776670 -73853450 + L1M4 LINE L1 3554 4089 -2057 3 1208 410 213 0 6 chr4 81778219 81778375 -73851745 + (TG)n Simple_repeat Simple_repeat 2 156 0 3 1208 450 0 0 0 chr4 81778628 81778678 -73851442 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1208 270 56 0 0 chr4 81778746 81778782 -73851338 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1208 364 273 121 0 chr4 81779240 81779339 -73850781 + B1F2 SINE Alu 1 111 -38 3 1208 436 230 69 0 chr4 81779253 81779340 -73850780 + ID_B1 SINE B4 98 190 -34 3 1208 245 301 66 57 chr4 81779513 81779673 -73850447 - MIRb SINE MIR -103 173 19 3 1208 276 270 43 27 chr4 81780186 81780310 -73849810 + MIR SINE MIR 48 169 -93 3 1208 659 309 50 20 chr4 81780315 81780513 -73849607 + ID_B1 SINE B4 2 205 -19 3 1208 208 316 108 57 chr4 81780570 81780728 -73849392 - MIRc SINE MIR -101 167 2 3 1208 369 43 0 0 chr4 81781343 81781390 -73848730 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1208 284 160 0 39 chr4 81782386 81782438 -73847682 + B3 SINE B2 161 210 -6 3 1208 326 183 14 0 chr4 81784293 81784364 -73845756 + GA-rich Low_complexity Low_complexity 2 73 0 3 1208 350 345 103 21 chr4 81784498 81784732 -73845388 + ORR1E LTR MaLR 1 253 -106 3 1208 243 294 0 0 chr4 81784736 81784787 -73845333 - ID4_ SINE ID -21 62 12 3 1208 273 29 0 0 chr4 81785525 81785559 -73844561 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1208 367 276 58 19 chr4 81785651 81785806 -73844314 + L1MB3 LINE L1 6020 6180 -3 3 1208 281 130 0 18 chr4 81786302 81786317 -73843803 + (GAA)n Simple_repeat Simple_repeat 2 15 0 3 1208 1234 61 0 13 chr4 81786317 81786466 -73843654 + B1_Mm SINE Alu 1 147 0 3 1208 281 130 0 18 chr4 81786466 81786505 -73843615 + (GAA)n Simple_repeat Simple_repeat 1 39 0 3 1208 276 200 48 32 chr4 81786912 81787036 -73843084 - Lx9 LINE L1 0 7644 7519 3 1208 216 0 0 0 chr4 81787037 81787061 -73843059 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1208 2959 227 38 26 chr4 81787061 81787748 -73842372 - Lx9 LINE L1 -229 7415 6721 3 1208 285 185 195 29 chr4 81788491 81788600 -73841520 - RMER6D LTR ERVK -254 466 336 3 1208 293 264 92 0 chr4 81788652 81788739 -73841381 - B1_Mus2 SINE Alu -49 98 4 3 1208 367 236 30 47 chr4 81788670 81788707 -73841413 - MT2B2 LTR ERVL -297 287 217 3 1208 236 212 0 15 chr4 81788707 81788774 -73841346 - ORR1B1-int LTR MaLR -827 682 617 3 1208 367 236 30 47 chr4 81788774 81788810 -73841310 - MT2B2 LTR ERVL -297 216 143 3 18 1346 203 11 8 chr4 81788810 81789078 -73841042 - Lx6 LINE L1 -1494 5966 5698 3 1209 590 217 247 0 chr4 81789073 81789239 -73840881 + Lx6 LINE L1 6828 7034 -426 3 1209 354 340 123 29 chr4 81789287 81789765 -73840355 + L1MC4 LINE L1 7332 7854 -188 3 1209 3348 208 45 48 chr4 81789801 81790552 -73839568 - Lx5 LINE L1 0 7050 6302 3 1209 1155 201 50 8 chr4 81790546 81790664 -73839456 + Lx5 LINE L1 5841 5964 -1086 3 1209 3184 38 14 0 chr4 81790664 81791030 -73839090 + L1Md_T LINE L1 6212 6582 0 3 1209 1155 214 51 17 chr4 81791030 81791210 -73838910 + Lx5 LINE L1 5959 6140 -860 3 1209 553 146 13 0 chr4 81791290 81791441 -73838679 + CT-rich Low_complexity Low_complexity 3 155 0 3 1209 389 54 18 0 chr4 81791433 81791489 -73838631 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1209 349 169 167 14 chr4 81791575 81791647 -73838473 - Lx5 LINE L1 -291 6759 6677 3 1209 414 0 0 0 chr4 81791647 81791693 -73838427 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1209 185 0 40 0 chr4 81792302 81792327 -73837793 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 1209 26 30 0 0 chr4 81795293 81795326 -73834794 + AT_rich Low_complexity Low_complexity 1 33 0 3 1209 303 314 41 25 chr4 81797783 81797904 -73832216 - MER5A1 DNA MER1_type -43 123 1 3 1209 186 143 14 54 chr4 81798275 81798349 -73831771 + T-rich Low_complexity Low_complexity 1 71 0 3 1209 376 301 96 24 chr4 81800454 81800662 -73829458 - MIR SINE MIR -37 225 3 3 1209 201 154 0 0 chr4 81800762 81800801 -73829319 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1209 23 33 0 0 chr4 81800938 81800968 -73829152 + AT_rich Low_complexity Low_complexity 1 30 0 3 1209 525 128 0 44 chr4 81802669 81802783 -73827337 + GA-rich Low_complexity Low_complexity 4 112 0 3 1209 31 0 0 0 chr4 81803333 81803364 -73826756 + AT_rich Low_complexity Low_complexity 1 31 0 3 1209 180 0 0 0 chr4 81804134 81804154 -73825966 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1209 259 290 0 0 chr4 81805053 81805122 -73824998 + ID4 SINE ID 2 70 -13 3 1209 21 36 0 0 chr4 81805364 81805392 -73824728 + AT_rich Low_complexity Low_complexity 1 28 0 3 1209 266 251 130 56 chr4 81805778 81805993 -73824127 + HAL1 LINE L1 825 1055 -1452 3 1209 432 0 0 0 chr4 81806825 81806873 -73823247 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1209 670 312 127 14 chr4 81807014 81807306 -73822814 - MLT1A0 LTR MaLR -40 325 1 3 1209 341 369 78 14 chr4 81808540 81808757 -73821363 - MLT1J LTR MaLR -166 346 116 3 1209 814 224 48 6 chr4 81810504 81810670 -73819450 + B3 SINE B2 20 192 -24 3 1209 2861 50 6 6 chr4 81811186 81811530 -73818590 + L1_Mus3 LINE L1 6289 6632 -6 3 1209 306 0 0 0 chr4 81811572 81811606 -73818514 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1209 414 0 0 0 chr4 81814478 81814524 -73815596 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1209 23 0 0 0 chr4 81815429 81815452 -73814668 + AT_rich Low_complexity Low_complexity 1 23 0 3 1209 267 271 28 14 chr4 81815911 81815982 -73814138 - MER5A DNA MER1_type 0 189 118 3 1209 315 132 0 0 chr4 81817377 81817430 -73812690 + Lx9 LINE L1 7591 7643 -1 3 1209 392 351 0 7 chr4 81817539 81817691 -73812429 - MIR SINE MIR -49 213 63 3 1209 3207 86 7 0 chr4 81817723 81818141 -73811979 - L1_Mm LINE L1 -46 5837 5417 3 1209 4273 50 35 51 chr4 81818141 81818706 -73811414 + L1_Mus2 LINE L1 6011 6566 0 3 1209 307 289 88 36 chr4 81821826 81822033 -73808087 + B4A SINE B4 10 250 -42 3 1209 259 357 79 0 chr4 81822086 81822212 -73807908 + MIRb SINE MIR 49 184 -84 4 1209 1424 231 108 14 chr4 81823349 81823720 -73806400 - MTD LTR MaLR -12 407 1 4 1209 2530 229 68 70 chr4 81823720 81824773 -73805347 - MTD-int LTR MaLR -27 1071 1 4 1209 1665 208 131 11 chr4 81824773 81825147 -73804973 - MTD LTR MaLR 0 419 1 4 1209 213 39 0 0 chr4 81825396 81825422 -73804698 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1209 486 0 0 0 chr4 81825422 81825475 -73804645 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1209 543 344 47 25 chr4 81825512 81825789 -73804331 - B4A SINE B4 -8 284 2 4 1209 786 270 79 10 chr4 81825851 81826053 -73804067 + B3 SINE B2 1 216 0 4 1209 275 0 29 0 chr4 81826852 81826887 -73803233 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 4 1209 247 171 21 74 chr4 81827534 81827561 -73802559 + T-rich Low_complexity Low_complexity 69 90 0 4 1209 257 0 30 0 chr4 81827561 81827594 -73802526 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 1209 247 171 21 74 chr4 81827594 81827661 -73802459 + T-rich Low_complexity Low_complexity 1 68 0 4 1209 4123 198 60 113 chr4 81827820 81828929 -73801191 + RMER1B Other Other 10 1060 -6 4 1209 1378 170 4 9 chr4 81829316 81829541 -73800579 - URR1B DNA MER1_type 0 225 2 4 1209 360 0 0 0 chr4 81829830 81829870 -73800250 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1209 435 299 7 49 chr4 81830000 81830144 -73799976 + B3A SINE B2 27 166 -32 4 1209 522 307 133 5 chr4 81830703 81831030 -73799090 - MLT1F2 LTR MaLR -136 424 27 4 1209 211 104 20 20 chr4 81831653 81831702 -73798418 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1209 561 341 75 10 chr4 81831939 81832243 -73797877 + MER70B LTR ERVL 1 470 -108 4 1209 38817 30 0 0 chr4 81833097 81839570 -73790550 - L1Md_T LINE L1 0 6585 59 4 1209 411 290 122 6 chr4 81840007 81840163 -73789957 + MIR3 SINE MIR 29 202 -6 4 1209 565 244 102 15 chr4 81840543 81840680 -73789440 - B1F2 SINE Alu 0 149 1 4 1209 222 37 0 0 chr4 81840724 81840751 -73789369 + (TTG)n Simple_repeat Simple_repeat 3 29 0 4 1209 261 57 0 0 chr4 81842657 81842692 -73787428 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1209 230 56 28 0 chr4 81844188 81844224 -73785896 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1209 401 295 68 43 chr4 81845009 81845179 -73784941 - B3A SINE B2 -13 203 33 4 1209 255 236 0 0 chr4 81848004 81848076 -73782044 + (ATG)n Simple_repeat Simple_repeat 1 72 0 4 1209 2300 4 0 0 chr4 81848194 81848437 -73781683 + L1Md_T LINE L1 6340 6582 0 4 1209 841 104 30 0 chr4 81848874 81849008 -73781112 + B2_Mm2 SINE B2 58 195 0 4 1209 1431 213 36 26 chr4 81849014 81849322 -73780798 + ORR1B1 LTR MaLR 76 386 -8 4 1209 6398 181 111 149 chr4 81849327 81851365 -73778755 + ORR1B1-int LTR MaLR 2 1963 0 4 1209 2274 172 26 13 chr4 81851365 81851754 -73778366 + ORR1B1 LTR MaLR 1 394 0 4 1209 2285 247 53 14 chr4 81851833 81852416 -73777704 - Lx7 LINE L1 -333 7363 6758 4 1209 263 167 56 0 chr4 81852799 81852853 -73777267 + B1F SINE Alu 86 142 -7 4 1209 423 215 55 18 chr4 81853855 81853964 -73776156 + ORR1E LTR MaLR 29 141 -218 4 1209 335 147 29 0 chr4 81854160 81854228 -73775892 + RMER1A Other Other 961 1030 0 4 1209 722 324 43 28 chr4 81854357 81854681 -73775439 - RLTR23 LTR ERV1 0 430 102 4 1209 500 168 0 199 chr4 81854705 81854861 -73775259 - RLTR23 LTR ERV1 -296 134 10 4 1209 442 320 90 99 chr4 81855385 81855728 -73774392 + ORR1E LTR MaLR 8 347 -12 4 1209 225 234 14 135 chr4 81855795 81855869 -73774251 - MLT1A0 LTR MaLR -260 105 41 4 1209 185 0 0 39 chr4 81855888 81855914 -73774206 + (CAT)n Simple_repeat Simple_repeat 3 27 0 4 1209 254 318 0 0 chr4 81855918 81855984 -73774136 - PB1D10 SINE Alu -14 103 38 4 1209 33391 72 5 2 chr4 81856420 81861684 -73768436 + L1Md_F2 LINE L1 307 5584 -299 4 1209 8539 48 4 3 chr4 81861686 81862681 -73767439 + L1Md_F2 LINE L1 5587 6582 0 4 1209 567 341 122 19 chr4 81862890 81863323 -73766797 + MLT1J LTR MaLR 5 482 -30 4 1209 358 266 25 0 chr4 81863425 81863504 -73766616 + BC1_Mm scRNA scRNA 6 86 -66 4 1209 306 0 0 0 chr4 81864371 81864405 -73765715 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1209 347 0 23 0 chr4 81865261 81865304 -73764816 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1209 666 130 0 0 chr4 81865799 81865930 -73764190 + (TC)n Simple_repeat Simple_repeat 2 132 0 4 1209 216 0 0 0 chr4 81865930 81865954 -73764166 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1209 307 60 29 43 chr4 81866343 81866413 -73763707 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1209 210 71 0 0 chr4 81868253 81868281 -73761839 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1209 499 178 14 22 chr4 81868309 81868447 -73761673 + C-rich Low_complexity Low_complexity 6 142 0 4 1209 1130 266 71 17 chr4 81868453 81868747 -73761373 + MTD LTR MaLR 20 329 -90 4 1209 1808 138 124 20 chr4 81868747 81869095 -73761025 + ORR1C2 LTR MaLR 1 384 0 4 1209 303 183 29 39 chr4 81869095 81869172 -73760948 + MTD LTR MaLR 283 416 -3 4 1209 928 288 30 20 chr4 81869172 81869470 -73760650 - Lx6 LINE L1 -597 6863 6563 4 1209 1503 251 48 81 chr4 81869498 81870015 -73760105 + Lx6 LINE L1 6952 7451 -9 4 1209 299 306 123 85 chr4 81872032 81872350 -73757770 + L2c LINE L2 3058 3387 0 4 1209 203 152 0 0 chr4 81872350 81872383 -73757737 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 4 1209 180 0 0 0 chr4 81872435 81872455 -73757665 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1209 270 169 231 0 chr4 81873839 81873904 -73756216 + ID4 SINE ID 1 80 -3 4 1209 379 279 162 0 chr4 81874539 81874650 -73755470 + ID_B1 SINE B4 94 222 -2 4 1209 261 243 13 13 chr4 81874997 81875072 -73755048 - LTR33A LTR ERVL -33 487 413 4 1209 296 346 25 19 chr4 81875477 81875636 -73754484 - MIR SINE MIR -13 249 90 4 1209 6634 149 69 7 chr4 81875678 81876931 -73753189 + Lx2B LINE L1 5500 6824 -176 4 1209 1010 153 6 6 chr4 81876928 81877105 -73753015 - L1_Mur2 LINE L1 -862 5015 4839 4 1209 23 86 0 0 chr4 81877113 81877171 -73752949 + AT_rich Low_complexity Low_complexity 1 58 0 4 1209 228 135 0 0 chr4 81877794 81877831 -73752289 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1209 198 0 0 0 chr4 81878282 81878304 -73751816 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1209 396 0 0 0 chr4 81878304 81878347 -73751773 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1209 279 0 0 0 chr4 81878347 81878377 -73751743 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1209 1994 201 65 15 chr4 81878450 81878849 -73751271 + MTD LTR MaLR 1 419 0 4 1209 182 299 14 56 chr4 81879079 81879150 -73750970 - L2b LINE L2 -2 3373 3306 4 1209 423 0 0 0 chr4 81879931 81879978 -73750142 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1209 209 83 0 27 chr4 81880279 81880316 -73749804 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 4 1209 291 202 0 0 chr4 81880978 81881062 -73749058 + CT-rich Low_complexity Low_complexity 1 84 0 4 1209 434 285 82 62 chr4 81881219 81881365 -73748755 + B3A SINE B2 68 216 0 4 1209 220 312 61 61 chr4 81881787 81881968 -73748152 - L2a LINE L2 -109 3317 3137 4 1209 336 253 46 0 chr4 81882030 81882117 -73748003 + B4A SINE B4 2 92 -200 4 1209 3015 97 79 17 chr4 81882513 81882933 -73747187 - RLTR41 LTR ERV1 0 446 1 4 1209 24 0 0 0 chr4 81884135 81884159 -73745961 + AT_rich Low_complexity Low_complexity 1 24 0 4 1209 295 246 18 0 chr4 81884272 81884329 -73745791 + PB1D10 SINE Alu 11 68 -49 4 1209 221 0 35 0 chr4 81884354 81884383 -73745737 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 4 1209 21 57 0 0 chr4 81884431 81884466 -73745654 + AT_rich Low_complexity Low_complexity 1 35 0 4 1209 691 248 14 7 chr4 81884669 81884807 -73745313 - RSINE1 SINE B4 -24 141 3 4 1209 258 98 0 0 chr4 81885151 81885192 -73744928 + B1_Mur4 SINE Alu 110 150 0 4 1209 320 302 125 11 chr4 81885645 81885829 -73744291 + L2 LINE L2 2396 2600 -819 4 1209 284 287 51 25 chr4 81885855 81885973 -73744147 + L2 LINE L2 2779 2899 -520 4 1209 574 298 45 14 chr4 81887190 81887411 -73742709 + L1MC LINE L1 5593 5820 -2062 4 1209 239 225 0 0 chr4 81889222 81889262 -73740858 + ORR1E LTR MaLR 1 40 -319 4 1209 207 176 0 0 chr4 81890107 81890141 -73739979 + GA-rich Low_complexity Low_complexity 3 36 0 4 1209 1029 257 94 23 chr4 81890212 81890511 -73739609 - ORR1D1 LTR MaLR 0 374 55 4 1209 1220 77 0 0 chr4 81891048 81891191 -73738929 + B1_Mus1 SINE Alu 1 143 -5 4 1209 1367 17 0 32 chr4 81891192 81891378 -73738742 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1209 669 141 15 15 chr4 81891378 81891515 -73738605 + GA-rich Low_complexity Low_complexity 1 137 0 4 1209 1832 50 11 80 chr4 81893634 81893896 -73736224 + L1_Mus2 LINE L1 6320 6563 -3 4 1209 238 274 11 45 chr4 81894712 81894800 -73735320 + L1M5 LINE L1 5811 5895 -229 4 1209 335 23 0 22 chr4 81896925 81896970 -73733150 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1209 255 368 13 7 chr4 81897066 81897219 -73732901 + MER5B DNA MER1_type 17 170 -8 4 1209 2472 98 166 10 chr4 81898215 81898626 -73731494 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1209 594 41 0 0 chr4 81898921 81898994 -73731126 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 1209 592 296 0 0 chr4 81899681 81899813 -73730307 + ORR1E LTR MaLR 8 139 -220 4 1209 811 188 11 0 chr4 81900100 81900276 -73729844 + GA-rich Low_complexity Low_complexity 3 180 0 4 1209 572 322 153 34 chr4 81901362 81901726 -73728394 + Charlie10 DNA MER1_type 32 473 -2349 4 1209 2216 64 266 6 chr4 81901726 81902042 -73728078 - MTB LTR MaLR -2 398 1 4 1209 572 322 153 34 chr4 81902042 81902317 -73727803 + Charlie10 DNA MER1_type 474 747 -2075 4 1209 1019 227 106 28 chr4 81902333 81902655 -73727465 + Lx9 LINE L1 7269 7615 -29 4 1209 293 300 49 12 chr4 81902842 81902923 -73727197 + B3A SINE B2 82 165 -33 4 1209 345 246 0 0 chr4 81903377 81903442 -73726678 + ID4_ SINE ID 5 69 -14 5 1209 342 0 0 0 chr4 81904095 81904133 -73725987 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1209 469 228 17 17 chr4 81904140 81904256 -73725864 - B3 SINE B2 -99 117 2 5 1209 3544 46 2 0 chr4 81904603 81904998 -73725122 + MTA_Mm LTR MaLR 1 396 0 5 1209 416 316 139 0 chr4 81905058 81905216 -73724904 - B3A SINE B2 -16 182 3 5 1209 261 261 0 14 chr4 81907644 81907714 -73722406 - MLT1A LTR MaLR -2 409 341 5 1209 7822 61 2 26 chr4 81907725 81908834 -73721286 - L1_Mus2 LINE L1 0 6566 5515 5 1209 192 40 0 0 chr4 81910143 81910168 -73719952 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1209 415 281 233 37 chr4 81910590 81910886 -73719234 - ORR1E LTR MaLR -2 357 4 5 1209 948 307 28 40 chr4 81911199 81911552 -73718568 - MLT1A LTR MaLR -13 361 13 5 1209 434 196 0 10 chr4 81912884 81912987 -73717133 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1209 446 227 72 9 chr4 81913038 81913149 -73716971 + PB1D7 SINE Alu 1 118 -2 5 1209 267 103 0 0 chr4 81913607 81913646 -73716474 + (CCCCCG)n Simple_repeat Simple_repeat 3 41 0 5 1209 2346 40 0 11 chr4 81915284 81915559 -73714561 + L1_Mus1 LINE L1 6290 6561 -6 5 1209 747 108 0 0 chr4 81915559 81915670 -73714450 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 5 1209 189 0 0 0 chr4 81915928 81915949 -73714171 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 5 1209 365 237 41 10 chr4 81916155 81916253 -73713867 - MLT1A LTR MaLR -273 101 1 5 1209 441 0 0 0 chr4 81916568 81916617 -73713503 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1209 783 270 161 0 chr4 81916620 81916868 -73713252 - B4A SINE B4 -4 288 1 5 1209 289 325 0 81 chr4 81917604 81917728 -73712392 - LFSINE_Vert SINE SINE -117 342 229 5 1209 234 0 0 0 chr4 81919724 81919750 -73710370 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 5 1209 236 130 22 0 chr4 81919786 81919832 -73710288 + CT-rich Low_complexity Low_complexity 2 48 0 5 1209 252 0 0 0 chr4 81919881 81919909 -73710211 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1210 201 296 27 27 chr4 81920699 81920772 -73709348 - MIR3 SINE MIR -48 160 88 5 1210 462 79 0 0 chr4 81920961 81921024 -73709096 + (TTTTTG)n Simple_repeat Simple_repeat 3 65 0 5 1210 769 208 21 0 chr4 81921271 81921415 -73708705 - B1_Mur1 SINE Alu -2 147 1 5 1210 965 232 5 16 chr4 81923843 81924027 -73706093 + B3 SINE B2 1 182 -34 5 1210 485 174 0 10 chr4 81924087 81924186 -73705934 + GA-rich Low_complexity Low_complexity 2 99 0 5 1210 24 0 0 0 chr4 81925415 81925439 -73704681 + AT_rich Low_complexity Low_complexity 1 24 0 5 1210 5538 67 0 8 chr4 81925495 81926161 -73703959 - L1_Mus2 LINE L1 0 6566 5906 5 1210 193 350 40 64 chr4 81928364 81928489 -73701631 - MIRb SINE MIR -29 239 118 5 1210 21 0 0 0 chr4 81930025 81930046 -73700074 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 5290 191 114 9 chr4 81930054 81931394 -73698726 - Lx9 LINE L1 -1 7643 6162 5 1210 769 283 0 53 chr4 81931679 81931869 -73698251 - B3A SINE B2 -18 180 1 5 1210 33 0 0 0 chr4 81932378 81932411 -73697709 + AT_rich Low_complexity Low_complexity 1 33 0 5 1210 903 191 74 11 chr4 81932917 81933107 -73697013 - B3 SINE B2 -14 202 1 5 1210 195 339 109 66 chr4 81934845 81935028 -73695092 - MIRb SINE MIR -36 232 42 5 1210 219 157 0 0 chr4 81936920 81936971 -73693149 + T-rich Low_complexity Low_complexity 1 51 0 5 1210 22 0 0 0 chr4 81938578 81938600 -73691520 + AT_rich Low_complexity Low_complexity 1 22 0 5 1210 180 77 0 0 chr4 81940284 81940310 -73689810 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1210 180 77 0 0 chr4 81940598 81940624 -73689496 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1210 261 57 0 0 chr4 81940708 81940743 -73689377 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1210 28 0 0 0 chr4 81941604 81941632 -73688488 + AT_rich Low_complexity Low_complexity 1 28 0 5 1210 267 173 0 0 chr4 81941935 81941987 -73688133 + T-rich Low_complexity Low_complexity 1 52 0 5 1210 234 0 0 0 chr4 81942082 81942108 -73688012 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1210 183 80 0 0 chr4 81942733 81942758 -73687362 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 5 1210 33 56 0 0 chr4 81942822 81942876 -73687244 + AT_rich Low_complexity Low_complexity 1 54 0 5 1210 216 170 43 0 chr4 81942893 81942940 -73687180 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1210 230 179 0 0 chr4 81943963 81944002 -73686118 + RLTR26 LTR ERVK 18 56 -586 5 1210 287 368 34 34 chr4 81944755 81944904 -73685216 + L2c LINE L2 3183 3331 -56 5 1210 274 321 96 15 chr4 81948029 81948165 -73681955 - MIR SINE MIR -113 149 3 5 1210 387 41 0 0 chr4 81949312 81949361 -73680759 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1210 450 0 0 0 chr4 81951012 81951062 -73679058 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1210 442 275 100 48 chr4 81953060 81953083 -73677037 + CYRA11_Mm Unknown Y-chromosome 147 386 -230 5 1210 1078 176 39 5 chr4 81953083 81953288 -73676832 - URR1A DNA MER1_type 0 226 15 5 1210 183 42 0 0 chr4 81953325 81953349 -73676771 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1210 341 250 45 0 chr4 81953787 81953875 -73676245 - B1_Mur2 SINE Alu -56 93 2 5 1210 1090 217 9 9 chr4 81954974 81955188 -73674932 + B3 SINE B2 2 215 -1 5 1210 235 65 97 0 chr4 81956417 81956479 -73673641 + A-rich Low_complexity Low_complexity 3 70 0 5 1210 338 208 139 0 chr4 81957861 81957933 -73672187 - PB1D10 SINE Alu -15 102 21 5 1210 23 0 0 0 chr4 81958650 81958673 -73671447 + AT_rich Low_complexity Low_complexity 1 23 0 5 1210 701 185 228 0 chr4 81959280 81959464 -73670656 + URR1A DNA MER1_type 1 226 0 5 1210 225 0 0 0 chr4 81960100 81960125 -73669995 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1210 815 277 16 37 chr4 81960169 81960360 -73669760 + ID_B1 SINE B4 1 187 -37 5 1210 220 279 36 30 chr4 81961106 81961272 -73668848 + (TCCTG)n Simple_repeat Simple_repeat 3 169 0 5 1210 237 65 0 0 chr4 81962019 81962050 -73668070 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 1210 23 33 0 0 chr4 81964935 81964965 -73665155 + AT_rich Low_complexity Low_complexity 1 30 0 5 1210 747 83 0 0 chr4 81971384 81971492 -73658628 + (TC)n Simple_repeat Simple_repeat 2 109 0 5 1210 465 90 0 0 chr4 81972713 81972780 -73657340 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1210 216 152 0 42 chr4 81973019 81973067 -73657053 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 5 1210 258 32 0 0 chr4 81973434 81973465 -73656655 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 5 1210 22 35 0 0 chr4 81974649 81974678 -73655442 + AT_rich Low_complexity Low_complexity 1 29 0 5 1210 279 0 0 0 chr4 81975269 81975300 -73654820 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1210 196 30 61 0 chr4 81975491 81975524 -73654596 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 5 1210 217 365 28 18 chr4 81976791 81976900 -73653220 - L2c LINE L2 -6 3381 3272 5 1210 257 359 48 0 chr4 81977354 81977457 -73652663 - L2a LINE L2 -4 3422 3315 5 1210 386 133 11 32 chr4 81978407 81978500 -73651620 + L1Md_F2 LINE L1 6492 6582 0 5 1210 665 284 57 16 chr4 81978729 81978922 -73651198 - B3 SINE B2 -10 206 6 5 1210 5957 52 5 9 chr4 81980348 81981108 -73649012 + L1Md_F2 LINE L1 5825 6581 -1 5 1210 276 268 14 0 chr4 81981156 81981227 -73648893 + (TATG)n Simple_repeat Simple_repeat 1 72 0 5 1210 303 247 0 138 chr4 81981227 81981321 -73648799 - PB1D10 SINE Alu -27 90 10 5 1210 450 327 33 7 chr4 81981538 81981689 -73648431 + RSINE1 SINE B4 5 159 -6 5 1210 373 192 33 8 chr4 81981796 81981917 -73648203 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 1210 207 372 20 93 chr4 81982258 81982409 -73647711 - L2b LINE L2 -23 3352 3213 5 1210 198 0 0 0 chr4 81982602 81982624 -73647496 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1210 375 23 0 0 chr4 81983925 81983969 -73646151 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1210 227 277 0 30 chr4 81984885 81984952 -73645168 + GA-rich Low_complexity Low_complexity 3 67 0 5 1210 484 294 61 14 chr4 81985576 81985724 -73644396 + ID_B1 SINE B4 70 224 0 5 1210 189 0 0 0 chr4 81985748 81985769 -73644351 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1210 21 82 0 0 chr4 81986106 81986155 -73643965 + AT_rich Low_complexity Low_complexity 1 49 0 5 1210 24 32 0 0 chr4 81986980 81987011 -73643109 + AT_rich Low_complexity Low_complexity 1 31 0 5 1210 208 121 0 0 chr4 81988541 81988574 -73641546 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1210 522 252 23 15 chr4 81988882 81989015 -73641105 - RSINE1 SINE B4 -29 136 3 5 1210 195 300 0 48 chr4 81989033 81989096 -73641024 + MIRb SINE MIR 199 258 -10 5 1210 265 351 0 0 chr4 81991021 81991135 -73638985 - MER103 DNA DNA -45 121 8 5 1210 327 104 0 0 chr4 81991485 81991533 -73638587 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 5 1210 247 258 0 75 chr4 81991533 81991600 -73638520 - ID4_ SINE ID -11 72 11 5 1210 498 182 10 39 chr4 81992880 81992994 -73637126 - PB1D9 SINE Alu -9 111 2 5 1210 617 200 190 22 chr4 81995041 81995225 -73634895 + B3 SINE B2 1 215 -1 5 1210 31 0 0 0 chr4 81995438 81995469 -73634651 + AT_rich Low_complexity Low_complexity 1 31 0 5 1210 519 285 52 70 chr4 81996826 81997056 -73633064 + MIRb SINE MIR 35 260 -8 5 1210 570 89 78 10 chr4 81998822 81998924 -73631196 - Lx2 LINE L1 0 6997 6889 6 1210 823 269 38 5 chr4 81998946 81999155 -73630965 - B3 SINE B2 0 216 1 6 1210 218 305 17 0 chr4 82000015 82000074 -73630046 + B4A SINE B4 86 145 -147 1 1210 505 237 36 29 chr4 82000024 82000163 -73629957 + B1F1 SINE Alu 10 149 0 2 1210 925 74 0 15 chr4 82000409 82000546 -73629574 + (GAA)n Simple_repeat Simple_repeat 2 136 0 3 1210 433 269 329 14 chr4 82000762 82000984 -73629136 + B4A SINE B4 1 292 0 4 1210 822 113 0 0 chr4 82001017 82001141 -73628979 + (GGGA)n Simple_repeat Simple_repeat 4 127 0 5 1210 236 28 56 0 chr4 82001415 82001451 -73628669 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 6 1210 539 268 32 24 chr4 82002769 82002895 -73627225 + B1_Mur1 SINE Alu 2 128 -21 7 1210 498 33 0 0 chr4 82002946 82003006 -73627114 + (TAG)n Simple_repeat Simple_repeat 3 62 0 8 1210 278 248 109 65 chr4 82003475 82003613 -73626507 + MamRep434 DNA TcMar 63 206 -220 9 1210 21 0 0 0 chr4 82003806 82003827 -73626293 + AT_rich Low_complexity Low_complexity 1 21 0 1 1210 276 30 0 0 chr4 82004341 82004374 -73625746 + (TTGG)n Simple_repeat Simple_repeat 4 36 0 1 1210 536 250 50 0 chr4 82004642 82004762 -73625358 - B1F1 SINE Alu -9 140 15 1 1210 369 268 45 52 chr4 82004762 82004776 -73625344 - ID_B1 SINE B4 -9 215 83 1 1210 1872 67 31 0 chr4 82006230 82006484 -73623636 + Lx2 LINE L1 6384 6645 -352 1 1210 1581 88 0 0 chr4 82006482 82006699 -73623421 + Lx2 LINE L1 6775 6991 -6 1 1210 815 129 0 14 chr4 82007355 82007497 -73622623 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 1 1210 22 0 0 0 chr4 82007961 82007983 -73622137 + AT_rich Low_complexity Low_complexity 1 22 0 1 1210 225 94 0 0 chr4 82008122 82008154 -73621966 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1210 193 244 29 157 chr4 82008897 82008999 -73621121 + MIRc SINE MIR 13 101 -167 1 1210 323 273 0 0 chr4 82009071 82009137 -73620983 + RSINE1 SINE B4 3 68 -97 1 1210 222 118 0 0 chr4 82009151 82009185 -73620935 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1210 317 278 53 44 chr4 82010084 82010197 -73619923 - AmnSINE1 SINE SINE -80 495 382 2 1210 311 233 14 14 chr4 82010589 82010663 -73619457 + L3 LINE CR1 4150 4223 -266 2 1210 25 31 0 0 chr4 82011472 82011504 -73618616 + AT_rich Low_complexity Low_complexity 1 32 0 2 1210 180 0 0 0 chr4 82011641 82011661 -73618459 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1210 1231 68 0 13 chr4 82011661 82011811 -73618309 - B1_Mus1 SINE Alu 0 148 1 2 1210 353 348 15 24 chr4 82011811 82012017 -73618103 - L1M5 LINE L1 -383 5741 5538 2 1210 237 98 0 0 chr4 82013459 82013500 -73616620 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 1210 729 265 101 0 chr4 82014409 82014598 -73615522 + B3 SINE B2 1 208 -8 2 1210 393 284 47 17 chr4 82014882 82015054 -73615066 - MER5B DNA MER1_type 0 178 2 2 1210 597 303 87 8 chr4 82015687 82015953 -73614167 + L1MB2 LINE L1 5878 6164 -7 3 1210 254 326 43 16 chr4 82016386 82016573 -73613547 - L1M6 LINE L1 -4930 1566 1375 3 1210 241 265 103 0 chr4 82017166 82017234 -73612886 - MIR SINE MIR 0 262 188 3 1210 576 217 66 0 chr4 82017592 82017698 -73612422 + B3 SINE B2 2 114 -102 3 1210 1221 68 0 0 chr4 82017893 82018039 -73612081 - B1_Mus1 SINE Alu -1 147 2 3 1210 1197 62 7 0 chr4 82018703 82018847 -73611273 + B1_Mus2 SINE Alu 1 145 -2 3 1210 309 185 0 0 chr4 82019482 82019547 -73610573 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1210 576 218 0 0 chr4 82019559 82019738 -73610382 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1210 731 317 85 28 chr4 82019798 82020045 -73610075 - B4A SINE B4 -1 291 31 3 1210 696 112 5 7 chr4 82021179 82021319 -73608801 - ORR1A3-int LTR MaLR -888 1075 982 3 1210 1008 155 159 5 chr4 82022378 82022573 -73607547 - URR1A DNA MER1_type -1 225 1 3 1210 1724 191 47 18 chr4 82022737 82023078 -73607042 + ORR1D1 LTR MaLR 1 351 -23 4 1210 200 352 39 47 chr4 82023234 82023362 -73606758 - L2 LINE L2 -954 2465 2339 4 1210 506 241 17 8 chr4 82023568 82023685 -73606435 + PB1D7 SINE Alu 1 118 -2 4 1210 210 118 0 0 chr4 82026272 82026306 -73603814 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1210 659 46 11 0 chr4 82028055 82028142 -73601978 + (TTTCC)n Simple_repeat Simple_repeat 3 90 0 4 1210 28 29 0 0 chr4 82028162 82028197 -73601923 + AT_rich Low_complexity Low_complexity 1 35 0 4 1210 195 139 0 0 chr4 82028733 82028769 -73601351 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 4 1210 207 0 0 0 chr4 82028887 82028910 -73601210 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1210 327 49 0 0 chr4 82029264 82029305 -73600815 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 1210 317 320 51 10 chr4 82030112 82030210 -73599910 + L3 LINE CR1 3193 3294 -1195 4 1210 468 123 0 0 chr4 82031234 82031307 -73598813 + (TTG)n Simple_repeat Simple_repeat 2 74 0 5 1210 180 0 0 0 chr4 82031965 82031985 -73598135 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1210 513 0 0 0 chr4 82032456 82032513 -73597607 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1210 672 13 0 0 chr4 82032513 82032589 -73597531 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1210 281 291 55 82 chr4 82033298 82033444 -73596676 - B1F1 SINE Alu -7 142 1 5 1210 470 267 25 80 chr4 82034329 82034492 -73595628 - RSINE1 SINE B4 -7 158 5 5 1210 265 310 61 14 chr4 82034683 82034830 -73595290 + L1MA6 LINE L1 6123 6276 -24 5 1210 877 114 45 8 chr4 82035009 82035142 -73594978 + B1_Mur3 SINE Alu 3 140 -9 5 1210 266 336 129 0 chr4 82035915 82036031 -73594089 + B1F2 SINE Alu 5 135 -14 5 1210 21 0 0 0 chr4 82036109 82036130 -73593990 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 518 291 0 21 chr4 82039169 82039313 -73590807 + B1F SINE Alu 9 149 0 6 1210 263 276 57 9 chr4 82039989 82040095 -73590025 + PB1D9 SINE Alu 5 115 -5 6 1210 1249 48 0 33 chr4 82040928 82041079 -73589041 + B1_Mm SINE Alu 2 147 0 6 1210 648 38 0 0 chr4 82041149 82041228 -73588892 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 6 1210 254 51 51 0 chr4 82041230 82041269 -73588851 + (AGGGGG)n Simple_repeat Simple_repeat 6 46 0 6 1210 936 0 0 0 chr4 82041269 82041373 -73588747 + (GGAAA)n Simple_repeat Simple_repeat 1 104 0 6 1210 239 68 33 33 chr4 82041766 82041827 -73588293 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 6 1210 1679 188 71 91 chr4 82041835 82041936 -73588184 + MTD LTR MaLR 19 113 -306 6 1210 243 0 0 0 chr4 82041936 82041963 -73588157 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1210 1679 188 71 91 chr4 82041963 82042270 -73587850 + MTD LTR MaLR 114 419 0 6 1210 635 300 37 51 chr4 82042370 82042584 -73587536 + B3A SINE B2 1 211 -5 6 1210 23 0 0 0 chr4 82043126 82043149 -73586971 + AT_rich Low_complexity Low_complexity 1 23 0 7 1210 323 296 3 0 chr4 82044844 82044944 -73585176 + ID4 SINE ID 15 115 -37 7 1210 462 204 0 0 chr4 82044945 82045048 -73585072 + GA-rich Low_complexity Low_complexity 4 106 0 7 1210 342 0 0 0 chr4 82046396 82046434 -73583686 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1210 387 0 0 0 chr4 82046963 82047006 -73583114 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1210 24 32 0 0 chr4 82047062 82047093 -73583027 + AT_rich Low_complexity Low_complexity 1 31 0 7 1210 262 268 14 0 chr4 82048209 82048280 -73581840 + ID4_ SINE ID 1 72 -11 7 1210 702 201 97 0 chr4 82048434 82048568 -73581552 + B1_Mur1 SINE Alu 2 148 -1 7 1210 195 100 0 0 chr4 82049032 82049062 -73581058 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1210 749 241 49 83 chr4 82049088 82049249 -73580871 + B3 SINE B2 9 176 -40 7 1210 489 76 0 0 chr4 82049249 82049315 -73580805 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1210 749 241 49 83 chr4 82049315 82049357 -73580763 + B3 SINE B2 177 205 -11 7 151 222 313 12 24 chr4 82051045 82051130 -73578990 + GA-rich Low_complexity Low_complexity 4 87 0 8 1211 697 291 61 11 chr4 82051692 82051953 -73578167 - B4A SINE B4 -17 275 2 8 1211 1033 233 39 10 chr4 82052018 82052222 -73577898 - B3 SINE B2 -6 210 1 8 1211 196 342 8 55 chr4 82052967 82053094 -73577026 - MIRb SINE MIR -114 154 34 8 1211 432 0 0 0 chr4 82053139 82053187 -73576933 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1211 192 40 0 0 chr4 82054856 82054881 -73575239 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 8 1211 180 0 0 0 chr4 82054888 82054908 -73575212 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1211 195 42 0 0 chr4 82055529 82055553 -73574567 + (CATA)n Simple_repeat Simple_repeat 4 27 0 8 1211 224 239 70 56 chr4 82056270 82056341 -73573779 + RSINE1 SINE B4 75 146 -19 8 1211 422 221 181 0 chr4 82057903 82058030 -73572090 - MIRb SINE MIR -29 239 90 9 1211 262 347 81 23 chr4 82058412 82058586 -73571534 - MER5A DNA MER1_type 0 189 6 9 1211 219 69 0 0 chr4 82058787 82058816 -73571304 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1211 278 254 13 29 chr4 82059287 82059391 -73570729 + ID4_ SINE ID 18 122 -30 9 1211 660 260 44 36 chr4 82060218 82060429 -73569691 - B3A SINE B2 -1 215 1 9 1211 1997 162 39 0 chr4 82062763 82063096 -73567024 + ORR1A1 LTR MaLR 1 346 0 9 1211 273 302 151 28 chr4 82066084 82066429 -73563691 + MLT1E2 LTR MaLR 148 590 -64 9 1211 531 0 0 0 chr4 82068121 82068180 -73561940 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1211 245 250 31 0 chr4 82068185 82068249 -73561871 - ID4_ SINE ID -16 67 2 9 1211 954 75 97 0 chr4 82068619 82068753 -73561367 + B1_Mus1 SINE Alu 2 148 0 9 1211 195 42 0 0 chr4 82068753 82068777 -73561343 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1211 318 50 0 0 chr4 82069041 82069081 -73561039 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1211 389 245 135 9 chr4 82069081 82069192 -73560928 - B1_Mur4 SINE Alu -15 135 11 1 1211 21 0 0 0 chr4 82069818 82069839 -73560281 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 1332 105 9 23 chr4 82071005 82071219 -73558901 + L1_Mus3 LINE L1 6428 6638 0 1 1211 1670 254 146 36 chr4 82071920 82072578 -73557542 + Lx8 LINE L1 6742 7471 -2 1 1211 432 0 0 0 chr4 82074074 82074122 -73555998 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1211 216 342 0 14 chr4 82075364 82075438 -73554682 + ID4_ SINE ID 10 82 -1 1 1211 426 256 92 75 chr4 82075461 82075634 -73554486 + B3A SINE B2 1 176 -22 1 1211 582 250 150 24 chr4 82076280 82076526 -73553594 - B4 SINE B4 -14 278 2 1 1211 21 57 0 0 chr4 82077188 82077223 -73552897 + AT_rich Low_complexity Low_complexity 1 35 0 1 1211 439 92 26 0 chr4 82077263 82077339 -73552781 + B1_Mur4 SINE Alu 68 145 -5 1 1211 24 0 0 0 chr4 82077339 82077363 -73552757 + AT_rich Low_complexity Low_complexity 1 24 0 1 1211 547 202 256 0 chr4 82077640 82077808 -73552312 + B3 SINE B2 5 215 -1 1 1211 261 160 0 62 chr4 82080250 82080330 -73549790 + CT-rich Low_complexity Low_complexity 1 75 0 1 1211 492 18 0 0 chr4 82082399 82082456 -73547664 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1211 456 19 0 0 chr4 82082456 82082508 -73547612 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1211 292 318 54 8 chr4 82082759 82082787 -73547333 + ID_B1 SINE B4 54 153 -71 1 1211 364 266 11 0 chr4 82082787 82082881 -73547239 + PB1D10 SINE Alu 2 96 -21 1 1211 216 0 0 0 chr4 82084516 82084540 -73545580 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1211 1041 81 15 0 chr4 82084540 82084676 -73545444 - B1_Mus1 SINE Alu -9 139 2 1 1211 477 185 0 0 chr4 82085315 82085396 -73544724 + 5S rRNA rRNA 3 83 -38 1 1211 897 130 7 7 chr4 82086685 82086824 -73543296 + B1_Mur4 SINE Alu 1 139 -11 1 1211 245 29 0 29 chr4 82086825 82086860 -73543260 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1211 819 50 0 25 chr4 82088047 82088169 -73541951 + L1Md_F3 LINE L1 6451 6569 -15 1 1211 440 277 49 49 chr4 82088291 82088435 -73541685 + B3A SINE B2 39 182 -16 1 1211 186 265 20 0 chr4 82088807 82088856 -73541264 + L2 LINE L2 2529 2578 -841 1 1211 184 321 51 51 chr4 82088945 82089083 -73541037 - L2b LINE L2 -8 3367 3230 1 1211 734 208 20 20 chr4 82089814 82089961 -73540159 + B1_Mus1 SINE Alu 2 148 0 1 1211 520 288 22 43 chr4 82090112 82090297 -73539823 + MLT1B LTR MaLR 205 385 -5 1 1211 263 207 35 0 chr4 82090520 82090578 -73539542 + RMER15 LTR ERVL 1 60 -515 1 1211 1381 259 97 16 chr4 82090601 82091096 -73539024 + RMER15 LTR ERVL 27 561 -14 1 1211 540 81 0 0 chr4 82091153 82091227 -73538893 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 1 1211 183 410 36 22 chr4 82091352 82091489 -73538631 + MIRb SINE MIR 69 207 -61 1 1211 200 35 35 0 chr4 82094174 82094203 -73535917 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1211 310 277 0 0 chr4 82094220 82094285 -73535835 - RSINE1 SINE B4 -31 134 70 1 1211 552 100 0 0 chr4 82094404 82094484 -73535636 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 1 1211 540 163 15 8 chr4 82095778 82095908 -73534212 + (TA)n Simple_repeat Simple_repeat 2 132 0 1 1211 257 326 163 16 chr4 82097852 82098042 -73532078 + MIRb SINE MIR 22 239 -29 1 1211 251 302 165 35 chr4 82099609 82099863 -73530257 + B4A SINE B4 3 289 -3 1 1211 297 0 0 0 chr4 82099887 82099920 -73530200 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1211 252 0 0 0 chr4 82102255 82102283 -73527837 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1211 300 314 42 141 chr4 82104474 82104715 -73525405 + MLT1A0 LTR MaLR 11 227 -138 1 1211 314 306 52 70 chr4 82105668 82105939 -73524181 - L4 LINE RTE -107 1922 1657 1 1211 186 430 9 0 chr4 82107046 82107153 -73522967 + L2b LINE L2 3252 3359 -16 1 1211 401 290 42 36 chr4 82107220 82107413 -73522707 + B2_Mm2 SINE B2 2 195 0 1 1211 653 200 84 8 chr4 82108171 82108302 -73521818 + RSINE1 SINE B4 1 141 -24 1 1211 1217 70 0 0 chr4 82108385 82108547 -73521573 + B2_Mm2 SINE B2 2 164 -29 1 1211 246 62 0 0 chr4 82108547 82108579 -73521541 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1 1211 1022 149 22 0 chr4 82108579 82108597 -73521523 + B2_Mm1t SINE B2 165 185 -8 1 1211 426 24 0 78 chr4 82108653 82108743 -73521377 + (TTTTTG)n Simple_repeat Simple_repeat 5 87 0 1 1211 1218 48 7 0 chr4 82108743 82108888 -73521232 - B1_Mm SINE Alu 0 147 2 1 1211 426 20 0 0 chr4 82109729 82109780 -73520340 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1211 360 43 0 0 chr4 82111776 82111822 -73518298 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1211 222 260 0 0 chr4 82113227 82113300 -73516820 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1211 405 0 0 0 chr4 82114710 82114755 -73515365 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1211 1125 59 0 0 chr4 82114780 82114915 -73515205 + B1_Mus1 SINE Alu 1 135 -13 1 1211 329 17 51 17 chr4 82114915 82114974 -73515146 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 1 1211 637 177 62 0 chr4 82114991 82115121 -73514999 + B1_Mus2 SINE Alu 10 147 0 1 1211 913 181 127 5 chr4 82115424 82115613 -73514507 - B3 SINE B2 0 216 5 1 1211 436 206 31 10 chr4 82115772 82115870 -73514250 - PB1D7 SINE Alu -9 111 12 1 1211 498 33 0 0 chr4 82116027 82116087 -73514033 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1211 213 65 0 0 chr4 82116241 82116272 -73513848 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1211 206 192 19 0 chr4 82117887 82117939 -73512181 + GA-rich Low_complexity Low_complexity 2 54 0 1 1211 27 0 0 0 chr4 82118352 82118379 -73511741 + AT_rich Low_complexity Low_complexity 1 27 0 1 1211 215 103 0 25 chr4 82118399 82118439 -73511681 + (GAAA)n Simple_repeat Simple_repeat 4 42 0 1 1211 225 94 0 0 chr4 82118695 82118727 -73511393 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1211 621 38 0 0 chr4 82119221 82119301 -73510819 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1211 302 0 26 0 chr4 82119971 82120009 -73510111 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1211 432 0 0 0 chr4 82121439 82121487 -73508633 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1211 626 248 81 38 chr4 82121522 82121732 -73508388 - ID_B1 SINE B4 -3 221 3 1 1211 207 0 0 0 chr4 82122934 82122957 -73507163 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1211 259 236 0 0 chr4 82123021 82123076 -73507044 - tRNA-Ala-GCA tRNA tRNA -9 66 12 1 1211 262 263 79 59 chr4 82123114 82123215 -73506905 + MIRb SINE MIR 16 118 -150 1 1211 201 256 0 0 chr4 82123907 82123950 -73506170 + MIR SINE MIR 26 68 -194 1 1211 437 236 0 28 chr4 82124032 82124141 -73505979 + PB1D10 SINE Alu 1 106 -11 1 1211 555 269 44 0 chr4 82125394 82125554 -73504566 + B3 SINE B2 31 197 -19 1 1211 701 230 0 0 chr4 82125648 82125787 -73504333 - B1_Mur2 SINE Alu -10 139 1 1 1211 216 0 0 0 chr4 82125870 82125894 -73504226 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1211 23 54 0 0 chr4 82126334 82126371 -73503749 + AT_rich Low_complexity Low_complexity 1 37 0 1 1211 21 71 0 0 chr4 82127191 82127233 -73502887 + AT_rich Low_complexity Low_complexity 1 42 0 1 1211 410 157 45 0 chr4 82128022 82128111 -73502009 - PB1D9 SINE Alu -1 119 27 1 1211 308 352 77 0 chr4 82128146 82128328 -73501792 - MIRb SINE MIR -17 251 56 1 1211 1520 26 11 5 chr4 82133179 82133369 -73496751 + L1Md_F3 LINE L1 6392 6582 -2 1 1211 1401 232 92 18 chr4 82133554 82133944 -73496176 + MTD LTR MaLR 1 419 0 1 1211 527 308 157 7 chr4 82133944 82134238 -73495882 + MLT1A0 LTR MaLR 16 353 -12 1 1211 24 0 0 0 chr4 82135229 82135253 -73494867 + AT_rich Low_complexity Low_complexity 1 24 0 1 1211 414 0 0 0 chr4 82139914 82139960 -73490160 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1211 261 0 0 0 chr4 82140747 82140776 -73489344 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1211 189 196 0 0 chr4 82144724 82144770 -73485350 + A-rich Low_complexity Low_complexity 1 46 0 1 1211 332 0 0 44 chr4 82145097 82145142 -73484978 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1211 468 0 0 0 chr4 82145522 82145574 -73484546 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1211 252 0 0 0 chr4 82145574 82145601 -73484519 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1211 201 176 0 0 chr4 82149082 82149116 -73481004 + A-rich Low_complexity Low_complexity 1 34 0 1 1211 192 158 0 0 chr4 82150300 82150338 -73479782 + (CCG)n Simple_repeat Simple_repeat 3 40 0 1 1211 185 0 0 39 chr4 82150999 82151025 -73479095 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 1211 189 0 0 0 chr4 82151316 82151337 -73478783 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 1 1211 218 320 0 0 chr4 82151774 82151849 -73478271 + C-rich Low_complexity Low_complexity 1 75 0 1 1211 243 88 0 0 chr4 82151888 82151922 -73478198 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 1 1211 21 36 0 0 chr4 82152207 82152235 -73477885 + GC_rich Low_complexity Low_complexity 1 28 0 1 1211 37 102 0 0 chr4 82152467 82152595 -73477525 + GC_rich Low_complexity Low_complexity 1 128 0 1 1211 228 111 0 0 chr4 82153787 82153823 -73476297 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1 1211 198 0 0 0 chr4 82155068 82155090 -73475030 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1211 259 213 0 26 chr4 82158529 82158606 -73471514 + T-rich Low_complexity Low_complexity 2 76 0 2 1211 192 40 0 0 chr4 82158771 82158796 -73471324 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1211 604 191 0 11 chr4 82158842 82159022 -73471098 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1211 249 33 0 0 chr4 82159025 82159055 -73471065 + (CGTG)n Simple_repeat Simple_repeat 4 33 0 2 1211 25 75 0 0 chr4 82159112 82159165 -73470955 + GC_rich Low_complexity Low_complexity 1 53 0 2 1211 213 39 0 0 chr4 82160764 82160790 -73469330 + (GAA)n Simple_repeat Simple_repeat 2 27 0 2 1211 24 0 0 0 chr4 82161787 82161811 -73468309 + AT_rich Low_complexity Low_complexity 1 24 0 2 1211 226 255 0 21 chr4 82162552 82162600 -73467520 + AmnSINE1 SINE SINE 12 58 -517 2 1211 237 83 0 0 chr4 82163878 82163914 -73466206 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1211 501 144 9 98 chr4 82164172 82164292 -73465828 + RMER17C LTR ERVK 74 179 -231 2 1211 658 34 0 22 chr4 82164292 82164383 -73465737 + (TCTCC)n Simple_repeat Simple_repeat 4 92 0 2 1211 501 144 9 98 chr4 82164383 82164486 -73465634 + RMER17C LTR ERVK 180 277 -133 2 1211 193 111 43 22 chr4 82164717 82164763 -73465357 + A-rich Low_complexity Low_complexity 2 48 0 2 1211 1149 61 0 33 chr4 82164787 82164939 -73465181 - B1_Mus1 SINE Alu -1 147 1 2 1211 487 288 54 0 chr4 82166578 82166783 -73463337 - MARNA DNA Mariner -164 422 207 2 1211 200 267 38 0 chr4 82166843 82166928 -73463192 + MIRc SINE MIR 48 127 -135 2 1211 243 0 0 0 chr4 82168225 82168252 -73461868 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1211 557 178 0 11 chr4 82168252 82168434 -73461686 + GA-rich Low_complexity Low_complexity 1 180 0 2 1211 495 295 119 95 chr4 82168540 82168825 -73461295 + B4 SINE B4 1 292 0 2 1211 339 25 0 0 chr4 82168837 82168877 -73461243 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1211 347 272 27 64 chr4 82168909 82169019 -73461101 + B1F SINE Alu 18 123 -26 2 1211 273 347 0 0 chr4 82169049 82169124 -73460996 + ID4_ SINE ID 3 77 -6 2 1211 261 57 0 0 chr4 82169124 82169159 -73460961 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2 1211 505 328 71 46 chr4 82169505 82169940 -73460180 - L1ME3A LINE L1 -231 5942 5497 2 1211 1203 62 0 0 chr4 82170149 82170295 -73459825 - B1_Mm SINE Alu 0 147 2 2 1211 811 133 73 0 chr4 82170555 82170705 -73459415 - B2_Mm2 SINE B2 -34 161 1 2 1211 207 0 0 0 chr4 82170711 82170734 -73459386 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1211 302 281 134 24 chr4 82170942 82171170 -73458950 - L1M5 LINE L1 -428 5752 5482 2 1211 342 0 0 0 chr4 82171192 82171230 -73458890 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1211 744 264 123 43 chr4 82171301 82171826 -73458294 - L1MD LINE L1 -763 5383 4818 2 1211 232 239 33 33 chr4 82171850 82171941 -73458179 - RSINE1 SINE B4 -62 103 13 2 1211 297 266 8 61 chr4 82172820 82172952 -73457168 - Cheshire DNA MER1_type -2216 204 80 2 1211 351 211 112 17 chr4 82173029 82173145 -73456975 + L1M5 LINE L1 5647 5773 -467 2 1211 21 36 0 0 chr4 82173387 82173415 -73456705 + AT_rich Low_complexity Low_complexity 1 28 0 2 1211 230 276 26 13 chr4 82174178 82174255 -73455865 + CT-rich Low_complexity Low_complexity 2 79 0 2 1211 489 110 0 0 chr4 82174538 82174611 -73455509 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2 1211 478 312 0 21 chr4 82174617 82174758 -73455362 - ID_B1 SINE B4 -3 221 84 2 1211 297 308 37 15 chr4 82175060 82175195 -73454925 - CR1_Mam LINE CR1 -664 1540 1403 2 1211 263 224 31 94 chr4 82175504 82175640 -73454480 - MIR SINE MIR -101 167 28 2 1211 522 83 0 0 chr4 82175879 82175951 -73454169 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1211 578 223 15 15 chr4 82176024 82176156 -73453964 - B3 SINE B2 0 216 85 2 1211 194 0 39 0 chr4 82177176 82177202 -73452918 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1211 423 0 0 0 chr4 82179068 82179115 -73451005 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1211 387 0 0 0 chr4 82179115 82179157 -73450963 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1211 621 90 0 0 chr4 82179589 82179678 -73450442 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 2 1211 420 111 0 0 chr4 82179672 82179735 -73450385 + (TCC)n Simple_repeat Simple_repeat 3 65 0 2 1211 189 0 0 0 chr4 82181627 82181648 -73448472 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1212 501 17 0 0 chr4 82185149 82185207 -73444913 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 2 1212 432 0 0 0 chr4 82185207 82185254 -73444866 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1212 477 0 0 0 chr4 82185254 82185306 -73444814 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1212 212 143 0 0 chr4 82186392 82186427 -73443693 + (G)n Simple_repeat Simple_repeat 1 35 0 2 1212 200 245 154 58 chr4 82186541 82186645 -73443475 - MIRb SINE MIR -7 261 148 2 1212 204 40 0 0 chr4 82186982 82187007 -73443113 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 2 1212 187 278 53 43 chr4 82187196 82187290 -73442830 + MIRc SINE MIR 159 253 -15 2 1212 542 224 9 0 chr4 82187381 82187488 -73442632 - B1_Mur2 SINE Alu -40 109 2 2 1212 429 204 19 48 chr4 82189556 82189659 -73440461 + MLT1B LTR MaLR 1 100 -290 2 1212 417 240 88 117 chr4 82189697 82189834 -73440286 - RSINE1 SINE B4 -31 134 2 2 1212 498 292 100 58 chr4 82189838 82190129 -73439991 + MLT1B LTR MaLR 84 386 -4 2 1212 508 304 35 12 chr4 82190239 82190409 -73439711 + MER45A DNA Tip100 2 175 -3 2 1212 186 43 0 0 chr4 82190679 82190702 -73439418 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1212 778 281 48 38 chr4 82190802 82191091 -73439029 - B4A SINE B4 0 292 1 2 1212 309 240 40 0 chr4 82191095 82191170 -73438950 + MTE2a-int LTR MaLR 1502 1579 -1 2 1212 774 287 27 87 chr4 82191170 82191571 -73438549 + MTE2a LTR MaLR 1 377 -2 2 1212 186 128 0 0 chr4 82191573 82191612 -73438508 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1212 285 256 0 24 chr4 82192650 82192734 -73437386 + ID4 SINE ID 2 83 0 2 1212 465 309 111 27 chr4 82192751 82193193 -73436927 + L1MB8 LINE L1 5696 6174 -4 2 1212 217 263 13 13 chr4 82193257 82193334 -73436786 + A-rich Low_complexity Low_complexity 2 78 0 2 1212 1884 179 78 3 chr4 82193523 82193909 -73436211 - MTC LTR MaLR -6 415 1 2 1212 6484 162 55 25 chr4 82193909 82195129 -73434991 - MTC-int LTR MaLR 0 1258 2 2 1212 2295 126 64 3 chr4 82195132 82195521 -73434599 - MTC LTR MaLR -8 413 1 2 1212 327 261 164 27 chr4 82195521 82195666 -73434454 + B3 SINE B2 51 215 -1 2 1212 359 342 138 29 chr4 82195886 82196262 -73433858 + MER63B DNA AcHobo 11 427 -9 2 1212 291 330 92 30 chr4 82196272 82196655 -73433465 + MLT1D LTR MaLR 19 474 -31 2 1212 215 211 0 0 chr4 82197280 82197318 -73432802 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1212 402 193 148 0 chr4 82197653 82197741 -73432379 - B1_Mur2 SINE Alu -23 126 26 2 1212 294 279 106 23 chr4 82198591 82198723 -73431397 + Arthur1A DNA Tip100 13 155 -22 2 1212 845 213 10 66 chr4 82198799 82198995 -73431125 + B3A SINE B2 3 187 -11 2 1212 555 29 0 0 chr4 82199948 82200017 -73430103 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1212 540 0 0 0 chr4 82200630 82200690 -73429430 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1212 238 326 44 7 chr4 82200804 82200940 -73429180 + MIR SINE MIR 119 259 -3 2 1212 450 49 0 0 chr4 82202401 82202462 -73427658 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1212 227 79 26 0 chr4 82204012 82204050 -73426070 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1212 21 0 0 0 chr4 82204173 82204194 -73425926 + AT_rich Low_complexity Low_complexity 1 21 0 2 1212 300 336 23 62 chr4 82204673 82204863 -73425257 + B4 SINE B4 46 230 -62 2 1212 562 219 32 0 chr4 82204863 82204986 -73425134 + B3A SINE B2 2 128 -70 2 1212 477 0 0 0 chr4 82205016 82205069 -73425051 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1212 192 338 13 13 chr4 82205160 82205235 -73424885 + MIR SINE MIR 27 101 -107 2 1212 442 224 30 14 chr4 82207169 82207464 -73422656 + (TG)n Simple_repeat Simple_repeat 1 299 0 2 1212 585 267 77 93 chr4 82208469 82208508 -73421612 - B3A SINE B2 -10 185 145 2 1212 306 0 0 0 chr4 82208508 82208542 -73421578 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1212 585 289 25 19 chr4 82208542 82208684 -73421436 - B3A SINE B2 -48 150 8 2 1212 350 220 17 180 chr4 82208810 82208982 -73421138 - B1F SINE Alu 0 149 6 2 1212 233 57 0 28 chr4 82209072 82209108 -73421012 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2 1212 263 322 25 57 chr4 82209199 82209321 -73420799 - MLT1J LTR MaLR -295 217 100 2 1212 1260 64 0 0 chr4 82209329 82209485 -73420635 - L1_Mus3 LINE L1 -293 6345 6190 2 1212 1886 123 40 28 chr4 82209485 82209811 -73420309 + L1_Mus3 LINE L1 6303 6632 -6 2 1212 1066 96 38 43 chr4 82210153 82210338 -73419782 + B2_Mm2 SINE B2 5 188 -7 2 1212 276 30 0 0 chr4 82210959 82210992 -73419128 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 2 1212 336 102 0 0 chr4 82211091 82211140 -73418980 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 2 1212 214 265 184 46 chr4 82211163 82211250 -73418870 + RSINE1 SINE B4 31 129 -36 2 1212 23 33 0 0 chr4 82211258 82211288 -73418832 + AT_rich Low_complexity Low_complexity 1 30 0 2 1212 595 221 87 39 chr4 82211473 82211680 -73418440 + Lx7 LINE L1 7480 7696 0 2 1212 370 283 18 9 chr4 82211829 82211943 -73418177 + MER94 DNA AcHobo 16 130 -4 2 1212 194 0 0 37 chr4 82212194 82212221 -73417899 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1212 23 33 0 0 chr4 82212471 82212501 -73417619 + AT_rich Low_complexity Low_complexity 1 30 0 2 1212 430 198 10 30 chr4 82212599 82212698 -73417422 + B1_Mur4 SINE Alu 54 150 0 2 1212 600 250 15 122 chr4 82213524 82213729 -73416391 - B3A SINE B2 -14 184 2 2 1212 634 239 0 0 chr4 82213820 82213933 -73416187 - B1_Mur2 SINE Alu -35 114 2 3 1212 22 106 0 0 chr4 82213944 82214029 -73416091 + AT_rich Low_complexity Low_complexity 1 85 0 3 1212 2178 179 50 17 chr4 82214412 82214562 -73415558 + RLTR16 LTR ERVK 1 153 -352 3 1212 180 0 0 0 chr4 82214562 82214582 -73415538 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1212 2178 179 50 17 chr4 82214582 82214908 -73415212 + RLTR16 LTR ERVK 154 492 -13 3 1212 647 264 155 12 chr4 82215127 82215319 -73414801 + MER2 DNA MER2_type 9 228 -117 3 1212 468 0 0 0 chr4 82215319 82215371 -73414749 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1212 647 264 155 12 chr4 82215371 82215423 -73414697 + MER2 DNA MER2_type 229 287 -58 3 1212 270 296 46 0 chr4 82215427 82215535 -73414585 + Ricksha_c DNA MuDR 350 462 -1586 3 1212 183 278 136 25 chr4 82215916 82216034 -73414086 - MIRb SINE MIR -75 193 63 3 1212 357 320 8 8 chr4 82216295 82216418 -73413702 - MLT1A0 LTR MaLR -220 145 23 3 1212 225 246 0 58 chr4 82216646 82216715 -73413405 + MER3 DNA MER1_type 95 159 -50 3 1212 1009 123 14 0 chr4 82216718 82216864 -73413256 - B1_Mur4 SINE Alu -1 149 2 3 1212 339 25 0 0 chr4 82216917 82216957 -73413163 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1212 288 0 0 0 chr4 82216957 82216988 -73413132 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1212 523 286 97 0 chr4 82217025 82217179 -73412941 + B3 SINE B2 2 170 -46 3 1212 243 306 0 14 chr4 82217428 82217501 -73412619 + GA-rich Low_complexity Low_complexity 3 74 0 3 1212 350 319 55 14 chr4 82217632 82217778 -73412342 + L1M5 LINE L1 5561 5712 -528 3 1212 255 125 0 0 chr4 82218762 82218802 -73411318 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1212 185 132 26 0 chr4 82219602 82219640 -73410480 + A-rich Low_complexity Low_complexity 2 40 0 3 1212 27 29 0 0 chr4 82220455 82220489 -73409631 + AT_rich Low_complexity Low_complexity 1 34 0 3 1212 928 295 70 28 chr4 82221225 82221584 -73408536 + MTD LTR MaLR 1 374 -45 3 1212 223 149 43 0 chr4 82222018 82222065 -73408055 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 3 1212 204 40 0 0 chr4 82222237 82222262 -73407858 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1212 2001 189 46 2 chr4 82222677 82223070 -73407050 - MTD LTR MaLR -9 410 1 3 1212 22 0 0 0 chr4 82223139 82223161 -73406959 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 242 247 135 0 chr4 82223285 82223374 -73406746 + L1M5 LINE L1 5372 5472 -722 3 1212 1723 187 61 25 chr4 82223457 82223852 -73406268 + MTD LTR MaLR 3 411 -8 3 1212 376 338 44 7 chr4 82223871 82224008 -73406112 + Charlie17a DNA MER1_type 1 142 -77 3 1212 279 301 19 19 chr4 82224121 82224226 -73405894 + CT-rich Low_complexity Low_complexity 1 105 0 3 1212 378 273 20 0 chr4 82224269 82224368 -73405752 - RSINE1 SINE B4 -63 102 2 3 1212 252 0 0 0 chr4 82224388 82224416 -73405704 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1212 429 287 62 20 chr4 82225658 82225804 -73404316 + RSINE1 SINE B4 11 162 -3 3 1212 241 258 173 38 chr4 82227103 82227236 -73402884 + L1MC3 LINE L1 6799 6949 -836 3 1212 686 292 52 15 chr4 82227292 82227560 -73402560 + MLT1A0 LTR MaLR 19 296 -69 3 1212 700 287 130 24 chr4 82227595 82228290 -73401830 + L1MC3 LINE L1 6973 7982 -13 3 1212 747 164 0 0 chr4 82229533 82229685 -73400435 + (TCCA)n Simple_repeat Simple_repeat 2 153 0 3 1212 185 348 29 0 chr4 82229688 82229757 -73400363 - L2b LINE L2 -9 3366 3296 3 1212 270 193 0 0 chr4 82230904 82230961 -73399159 + T-rich Low_complexity Low_complexity 1 57 0 3 1212 317 47 62 0 chr4 82231924 82231988 -73398132 + (TAA)n Simple_repeat Simple_repeat 1 68 0 3 1212 288 0 0 0 chr4 82234196 82234228 -73395892 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1212 195 42 0 0 chr4 82234253 82234277 -73395843 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1212 483 69 0 0 chr4 82234851 82234923 -73395197 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1212 433 193 88 35 chr4 82236163 82236276 -73393844 - PB1D9 SINE Alu 0 120 2 3 1212 2174 116 13 61 chr4 82236462 82236840 -73393280 - Lx2B LINE L1 -2 6998 6639 3 1212 538 303 83 45 chr4 82237172 82237438 -73392682 + B4A SINE B4 1 276 -16 3 1212 270 0 0 0 chr4 82237443 82237473 -73392647 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1212 333 0 0 0 chr4 82237473 82237509 -73392611 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1212 465 122 0 0 chr4 82238245 82238319 -73391801 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 3 1212 324 0 0 0 chr4 82238795 82238831 -73391289 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1212 360 0 0 0 chr4 82238831 82238870 -73391250 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1212 334 263 31 21 chr4 82238956 82239053 -73391067 + C-rich Low_complexity Low_complexity 6 103 0 3 1212 611 335 95 7 chr4 82239633 82239916 -73390204 + MLT1F LTR MaLR 131 438 -6 3 1212 574 301 129 21 chr4 82239921 82240296 -73389824 + MLT1F-int LTR MaLR 19 433 -954 3 1212 506 344 123 11 chr4 82240434 82240710 -73389410 + MLT1F-int LTR MaLR 673 979 -408 3 1212 23 0 0 0 chr4 82242150 82242173 -73387947 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 254 315 107 27 chr4 82242582 82242732 -73387388 - MER63D DNA AcHobo -893 168 7 3 1212 581 248 0 33 chr4 82242929 82243079 -73387041 - MT2A LTR ERVL -388 145 1 3 1212 893 310 138 26 chr4 82243419 82243910 -73386210 + MLT1F LTR MaLR 3 548 0 3 1212 196 338 15 0 chr4 82244036 82244104 -73386016 + L2a LINE L2 3358 3426 0 3 1212 435 52 0 0 chr4 82245466 82245524 -73384596 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1212 292 308 0 0 chr4 82245808 82245886 -73384234 - ID4 SINE ID 0 83 6 3 1212 336 280 58 36 chr4 82245917 82246054 -73384066 - B1F1 SINE Alu -9 140 1 3 1212 224 302 110 71 chr4 82246105 82246287 -73383833 + MIRb SINE MIR 78 266 -2 3 1212 2115 136 46 22 chr4 82246442 82246811 -73383309 - ORR1C1 LTR MaLR 0 378 1 3 1212 1097 241 159 16 chr4 82246850 82247170 -73382950 + ORR1D2 LTR MaLR 1 366 -4 3 1212 1922 249 29 39 chr4 82247174 82247718 -73382402 + ORR1D2-int LTR MaLR 1 539 -831 3 1212 1814 204 148 4 chr4 82247728 82248186 -73381934 + ORR1D2-int LTR MaLR 847 1370 0 3 1212 1223 246 43 56 chr4 82248186 82248340 -73381780 + ORR1D2 LTR MaLR 1 150 -220 3 1212 1658 32 0 0 chr4 82248340 82248526 -73381594 + B2_Mm1a SINE B2 2 187 -6 3 1212 1223 246 43 56 chr4 82248526 82248746 -73381374 + ORR1D2 LTR MaLR 151 370 0 3 1212 269 333 73 89 chr4 82248763 82249066 -73381054 - MLT1F2 LTR MaLR -47 606 309 3 1212 283 307 11 0 chr4 82249144 82249232 -73380888 - MLT1F2 LTR MaLR -413 147 59 3 1212 493 267 9 0 chr4 82249913 82250029 -73380091 + PB1D10 SINE Alu 1 117 0 3 1212 182 38 0 133 chr4 82250192 82250252 -73379868 + T-rich Low_complexity Low_complexity 2 53 0 3 1212 318 268 143 0 chr4 82251563 82251675 -73378445 + MER45A DNA Tip100 11 138 -40 3 1212 186 103 0 0 chr4 82253075 82253104 -73377016 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1212 522 241 124 0 chr4 82255920 82256065 -73374055 - MER103 DNA DNA -1 165 3 3 1212 875 80 8 0 chr4 82257549 82257674 -73372446 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 1212 675 160 99 0 chr4 82258161 82258292 -73371828 + B1_Mur3 SINE Alu 1 144 -5 3 1212 426 290 31 25 chr4 82258792 82258951 -73371169 + RSINE1 SINE B4 5 164 -1 3 1212 306 0 0 0 chr4 82259400 82259434 -73370686 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1212 342 0 0 0 chr4 82259434 82259471 -73370649 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1212 198 71 0 0 chr4 82260363 82260391 -73369729 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1212 315 0 0 0 chr4 82261183 82261218 -73368902 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1212 618 280 230 18 chr4 82261594 82261929 -73368191 + Lx8 LINE L1 6887 7292 -181 3 1212 775 259 108 35 chr4 82263245 82263589 -73366531 + ORR1D2 LTR MaLR 1 369 -1 3 1212 631 28 0 0 chr4 82265526 82265598 -73364522 - tRNA-His-CAY_ tRNA tRNA -3 72 1 3 1212 180 97 0 0 chr4 82266548 82266579 -73363541 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 3 1212 294 87 0 0 chr4 82268719 82268765 -73361355 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1212 450 0 0 0 chr4 82268785 82268835 -73361285 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1212 229 307 58 86 chr4 82269804 82269943 -73360177 + MIRb SINE MIR 96 230 -38 3 1212 421 259 69 0 chr4 82270766 82270897 -73359223 + B1F2 SINE Alu 2 141 -8 3 1212 195 114 0 0 chr4 82271007 82271042 -73359078 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1212 564 224 16 41 chr4 82271042 82271163 -73358957 - PB1D9 SINE Alu 0 120 3 3 1212 537 240 112 0 chr4 82271226 82271351 -73358769 + RSINE1 SINE B4 3 141 -24 3 1212 339 78 0 0 chr4 82271360 82271411 -73358709 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1212 232 206 15 0 chr4 82273492 82273560 -73356560 + Lx6 LINE L1 7365 7433 -27 3 1212 387 0 0 0 chr4 82273573 82273616 -73356504 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1212 330 350 35 35 chr4 82273659 82273914 -73356206 - L1ME3B LINE L1 -188 6052 5798 3 1212 1207 263 39 27 chr4 82273931 82274345 -73355775 + MTC LTR MaLR 3 421 0 3 1212 468 226 0 0 chr4 82274349 82274442 -73355678 - B1_Mur2 SINE Alu -56 93 1 3 1212 337 240 90 0 chr4 82274353 82274453 -73355667 - B4 SINE B4 -114 178 70 3 1212 462 285 83 104 chr4 82274723 82274891 -73355229 + B3A SINE B2 2 160 -35 3 1212 288 0 0 0 chr4 82274891 82274923 -73355197 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1212 251 285 83 104 chr4 82274923 82274946 -73355174 + B2_Mm2 SINE B2 161 189 -6 3 1212 216 192 19 0 chr4 82275012 82275064 -73355056 + T-rich Low_complexity Low_complexity 2 54 0 3 1212 405 67 87 0 chr4 82275167 82275271 -73354849 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1212 360 328 54 8 chr4 82275288 82275417 -73354703 - RSINE1 SINE B4 -16 149 15 3 1212 299 312 23 15 chr4 82275418 82275548 -73354572 - L1MEd LINE L1 -4951 1274 1144 3 1212 711 149 0 0 chr4 82276164 82276285 -73353835 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1212 359 342 92 55 chr4 82276356 82276792 -73353328 - L1MEd LINE L1 -5222 897 446 3 1212 2877 89 18 2 chr4 82278218 82278612 -73351508 + MTB LTR MaLR 1 400 0 3 1212 930 48 0 23 chr4 82279072 82279201 -73350919 + B1_Mus1 SINE Alu 22 147 -1 4 1212 1869 228 111 19 chr4 82279363 82279894 -73350226 + Lx9 LINE L1 7058 7637 -7 4 1212 182 369 69 8 chr4 82280337 82280468 -73349652 - MIRb SINE MIR -121 147 9 4 1212 25 51 0 0 chr4 82280712 82280751 -73349369 + AT_rich Low_complexity Low_complexity 1 39 0 4 1212 1156 159 72 0 chr4 82281041 82281248 -73348872 - URR1A DNA MER1_type 0 226 5 4 1212 321 261 0 54 chr4 82281342 82281435 -73348685 - B1F2 SINE Alu -61 88 1 4 1212 183 286 0 0 chr4 82281695 82281772 -73348348 + GA-rich Low_complexity Low_complexity 4 80 0 4 1212 24 32 0 0 chr4 82282135 82282166 -73347954 + AT_rich Low_complexity Low_complexity 1 31 0 4 1212 314 45 23 0 chr4 82283048 82283092 -73347028 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1212 219 36 0 0 chr4 82284072 82284100 -73346020 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1212 607 270 34 22 chr4 82284389 82284567 -73345553 - B3A SINE B2 -17 181 2 4 1212 285 286 113 53 chr4 82284944 82285077 -73345043 + RSINE1 SINE B4 22 162 -3 4 1212 267 349 60 28 chr4 82285463 82285681 -73344439 + L1MC LINE L1 5524 5748 -2134 4 1212 25 51 0 0 chr4 82286199 82286238 -73343882 + AT_rich Low_complexity Low_complexity 1 39 0 4 1212 189 380 22 32 chr4 82286251 82286436 -73343684 + L2 LINE L2 2770 2952 -467 4 1212 22 0 0 0 chr4 82287932 82287954 -73342166 + AT_rich Low_complexity Low_complexity 1 22 0 4 1212 237 83 0 0 chr4 82288698 82288734 -73341386 + (CAA)n Simple_repeat Simple_repeat 1 36 0 4 1212 306 0 0 0 chr4 82288996 82289030 -73341090 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1212 380 184 261 18 chr4 82289192 82289303 -73340817 - MER20 DNA MER1_type -45 174 37 4 1212 252 0 0 0 chr4 82290510 82290538 -73339582 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1212 428 344 13 6 chr4 82291340 82291498 -73338622 - B4 SINE B4 -69 223 65 4 1212 197 108 27 0 chr4 82291500 82291537 -73338583 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1212 242 290 193 18 chr4 82292251 82292360 -73337760 - MTE2a LTR MaLR -51 328 201 4 1212 681 322 121 13 chr4 82292687 82293134 -73336986 + RMER5 LTR ERV1 24 518 -16 4 1212 331 310 59 44 chr4 82293155 82293290 -73336830 - MLT1A0 LTR MaLR -155 210 74 4 1212 35586 69 13 16 chr4 82293303 82299536 -73330584 - L1Md_F2 LINE L1 -1 6581 370 4 1212 1154 244 157 11 chr4 82299701 82300141 -73329979 - Lx7 LINE L1 0 7696 7193 4 1212 252 0 0 0 chr4 82300144 82300172 -73329948 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1212 1088 101 0 0 chr4 82300172 82300311 -73329809 - B1_Mus1 SINE Alu -9 139 1 4 1212 873 262 42 4 chr4 82300328 82300569 -73329551 - MLT-int LTR MaLR -65 1670 1421 4 1212 893 284 156 22 chr4 82302193 82302821 -73327299 - L1M2 LINE L1 -811 5486 4725 4 1212 710 315 66 60 chr4 82303208 82303711 -73326409 - L1M2 LINE L1 -2197 3946 3441 4 1212 276 296 97 19 chr4 82303865 82304123 -73325997 - L1_Mur3 LINE L1 -4252 1628 1351 4 1212 297 0 0 0 chr4 82304203 82304236 -73325884 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1212 252 0 0 0 chr4 82305275 82305303 -73324817 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1212 432 0 0 0 chr4 82305303 82305350 -73324770 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1212 920 206 182 42 chr4 82306121 82306456 -73323664 + RMER5 LTR ERV1 13 394 -140 4 1212 1835 100 92 45 chr4 82306464 82306778 -73323342 + Lx4A LINE L1 6729 7057 -1 4 1212 186 71 0 0 chr4 82306817 82306845 -73323275 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1212 367 324 4 112 chr4 82306933 82307096 -73323024 + LTR31 LTR ERV1 397 536 -83 4 1212 228 35 0 0 chr4 82307096 82307125 -73322995 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1212 367 324 4 112 chr4 82307125 82307194 -73322926 + LTR31 LTR ERV1 537 604 -15 4 1212 207 341 12 0 chr4 82307607 82307692 -73322428 + GA-rich Low_complexity Low_complexity 1 86 0 4 1212 247 348 66 36 chr4 82310927 82311017 -73319103 + MIR SINE MIR 13 109 -153 4 1212 1847 119 106 20 chr4 82311017 82311318 -73318802 - ORR1A2 LTR MaLR 0 327 1 4 1212 247 348 66 36 chr4 82311318 82311394 -73318726 + MIR SINE MIR 110 184 -78 4 1212 390 17 51 0 chr4 82312249 82312308 -73317812 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 4 1212 386 349 26 16 chr4 82312509 82312701 -73317419 - MLT1A LTR MaLR 0 374 181 4 1212 384 119 0 0 chr4 82312739 82312798 -73317322 + (CACG)n Simple_repeat Simple_repeat 1 59 0 4 1212 262 271 90 35 chr4 82312834 82312979 -73317141 - MLT1A LTR MaLR -183 191 39 4 1213 230 319 35 52 chr4 82313472 82313644 -73316476 + MER5B DNA MER1_type 4 172 -6 4 1213 334 296 29 36 chr4 82313473 82313613 -73316507 - MER5A DNA MER1_type -5 184 46 4 1213 31 26 0 0 chr4 82314581 82314619 -73315501 + AT_rich Low_complexity Low_complexity 1 38 0 4 1213 206 203 27 13 chr4 82314716 82314759 -73315361 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 4 1213 790 162 13 39 chr4 82314759 82314913 -73315207 - B1_Mur4 SINE Alu 0 150 1 4 1213 206 203 27 13 chr4 82314913 82314944 -73315176 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 4 1213 525 239 43 14 chr4 82314944 82315084 -73315036 - B1F SINE Alu 0 149 6 4 1213 2121 79 11 0 chr4 82315623 82315902 -73314218 - L1_Mus1 LINE L1 0 6567 6286 4 1213 1908 199 55 8 chr4 82315928 82316328 -73313792 + MTD LTR MaLR 1 419 0 4 1213 7546 59 7 2 chr4 82316602 82317946 -73312174 + L1Md_F2 LINE L1 5195 6547 -35 4 1213 3131 57 20 15 chr4 82317946 82318355 -73311765 + RLTR10A LTR ERVK 1 411 0 4 1213 1381 72 11 14 chr4 82318355 82318603 -73311517 + IAP-d-int LTR ERVK 121 602 -1385 4 1213 662 169 154 0 chr4 82318597 82318733 -73311387 + IAP-d-int LTR ERVK 347 503 -6039 4 1213 3662 59 89 12 chr4 82318733 82319217 -73310903 + IAP-d-int LTR ERVK 5007 5527 -1015 4 1213 1620 65 19 5 chr4 82319221 82319436 -73310684 + IAP-d-int LTR ERVK 5667 5884 -658 4 1213 5102 77 19 16 chr4 82319437 82320133 -73309987 + RLTR10-int LTR ERVK 1288 1985 -2 4 1213 3146 60 25 0 chr4 82320142 82320543 -73309577 + RLTR10A LTR ERVK 1 411 0 4 1213 359 287 158 55 chr4 82321636 82321964 -73308156 + MTEa LTR MaLR 1 361 -18 4 1213 885 122 83 0 chr4 82322449 82322605 -73307515 - B2_Mm2 SINE B2 -2 193 25 4 1213 440 259 8 17 chr4 82323622 82323740 -73306380 - MTEa LTR MaLR -1 378 262 4 1213 462 269 125 71 chr4 82324621 82324845 -73305275 + B4A SINE B4 1 236 -56 4 1213 300 53 0 0 chr4 82324908 82324946 -73305174 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1213 644 213 24 0 chr4 82325002 82325129 -73304991 + B3 SINE B2 1 130 -86 4 1213 202 228 18 0 chr4 82325159 82325184 -73304936 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 4 1213 856 140 58 14 chr4 82325184 82325322 -73304798 + B1_Mur4 SINE Alu 1 144 -6 4 1213 202 228 18 0 chr4 82325322 82325353 -73304767 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1213 201 367 45 11 chr4 82326160 82326339 -73303781 + MIRb SINE MIR 67 251 -17 4 1213 1372 202 142 33 chr4 82326870 82327202 -73302918 - ORR1D2 LTR MaLR -2 368 1 4 1213 255 284 117 53 chr4 82327994 82328165 -73301955 + MLT1K LTR MaLR 398 579 -16 4 1213 231 263 31 31 chr4 82328314 82328378 -73301742 - MIRc SINE MIR -189 79 13 4 1213 387 0 0 0 chr4 82328461 82328504 -73301616 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1213 261 0 0 0 chr4 82328937 82328966 -73301154 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1213 23 33 0 0 chr4 82331229 82331259 -73298861 + AT_rich Low_complexity Low_complexity 1 30 0 4 1213 272 277 181 0 chr4 82331261 82331355 -73298765 - PB1D7 SINE Alu -9 111 1 4 1213 1252 63 101 17 chr4 82331386 82331565 -73298555 - B2_Mm2 SINE B2 0 195 2 4 1213 314 289 198 4 chr4 82332794 82333045 -73297075 + Arthur1B DNA Tip100 888 1165 -60 4 1213 279 0 0 0 chr4 82333727 82333758 -73296362 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1213 693 238 41 6 chr4 82335438 82335607 -73294513 + B3A SINE B2 6 180 -18 4 1213 424 147 0 0 chr4 82335677 82335745 -73294375 + ID4_ SINE ID 1 68 -15 4 1213 185 0 40 0 chr4 82337578 82337603 -73292517 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 4 1213 376 100 0 41 chr4 82337977 82338050 -73292070 + (TGG)n Simple_repeat Simple_repeat 2 71 0 4 1213 409 138 12 12 chr4 82339052 82339133 -73290987 + GA-rich Low_complexity Low_complexity 4 84 0 4 1213 240 111 0 0 chr4 82340219 82340255 -73289865 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1213 196 354 56 17 chr4 82340406 82340584 -73289536 + MIRb SINE MIR 74 258 -10 4 1213 301 155 42 0 chr4 82342337 82342408 -73287712 + CT-rich Low_complexity Low_complexity 2 75 0 4 1213 529 267 30 24 chr4 82342618 82342787 -73287333 - B4 SINE B4 -73 219 50 4 1213 832 237 22 68 chr4 82343627 82343648 -73286472 + B3 SINE B2 5 21 -195 4 1213 832 146 242 0 chr4 82343648 82343826 -73286294 + URR1B DNA MER1_type 5 225 0 4 1213 832 237 22 68 chr4 82343826 82344026 -73286094 + B3 SINE B2 22 216 0 4 1213 278 333 8 16 chr4 82345001 82345123 -73284997 + MIRb SINE MIR 116 236 -32 4 1213 201 219 102 0 chr4 82347071 82347128 -73282992 + L2a LINE L2 3362 3417 -9 4 1213 208 233 0 23 chr4 82351877 82351921 -73278199 + G-rich Low_complexity Low_complexity 4 46 0 4 1213 405 0 0 0 chr4 82352042 82352087 -73278033 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1213 192 40 0 0 chr4 82352521 82352546 -73277574 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 4 1213 1799 100 109 7 chr4 82353181 82353464 -73276656 - Lx2B LINE L1 -1 6999 6688 4 1213 295 89 0 43 chr4 82353464 82353511 -73276609 + Lx2B LINE L1 6661 6705 -295 4 1213 388 139 19 38 chr4 82354953 82355058 -73275062 + GA-rich Low_complexity Low_complexity 1 103 0 4 1213 305 285 87 41 chr4 82355452 82355624 -73274496 + MIRb SINE MIR 5 188 -80 4 1213 378 0 0 0 chr4 82356548 82356590 -73273530 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1213 417 217 0 0 chr4 82356590 82356673 -73273447 - B1_Mur4 SINE Alu -10 140 58 4 1213 382 295 38 8 chr4 82356808 82356941 -73273179 - B1F2 SINE Alu -1 148 12 4 1213 232 291 145 30 chr4 82357084 82357215 -73272905 + Tigger5 DNA MER2_type 1 146 -2260 5 1213 292 333 0 18 chr4 82357272 82357385 -73272735 + Tigger5 DNA MER2_type 2296 2406 0 5 1213 211 343 98 0 chr4 82358137 82358239 -73271881 - MIRm SINE MIR -9 267 156 5 1213 1715 21 0 0 chr4 82358333 82358525 -73271595 + B2_Mm1t SINE B2 2 193 0 5 1213 250 185 19 0 chr4 82359015 82359069 -73271051 - L1ME2z LINE L1 -336 6108 6054 5 1213 24 0 0 0 chr4 82359504 82359528 -73270592 + AT_rich Low_complexity Low_complexity 1 24 0 5 1213 379 319 38 53 chr4 82359896 82360158 -73269962 - L1MD LINE L1 -1139 5007 4750 5 1213 243 193 89 22 chr4 82360621 82360711 -73269409 - L1M5 LINE L1 -1816 4330 4235 5 1213 224 79 0 50 chr4 82360780 82360820 -73269300 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 5 1213 316 328 113 6 chr4 82361211 82361530 -73268590 - L1M5 LINE L1 -2231 3915 3563 5 1213 231 215 0 0 chr4 82362812 82362877 -73267243 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1213 476 204 17 6 chr4 82362890 82363067 -73267053 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1213 321 295 0 0 chr4 82363083 82363161 -73266959 - RSINE1 SINE B4 -86 79 2 5 1213 484 280 153 0 chr4 82363172 82363361 -73266759 - ID_B1 SINE B4 -5 219 2 5 1213 648 205 8 0 chr4 82363390 82363517 -73266603 + B3A SINE B2 2 129 -69 5 1213 584 38 13 0 chr4 82363519 82363598 -73266522 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1213 465 292 55 7 chr4 82364260 82364405 -73265715 + RSINE1 SINE B4 3 154 -11 5 1213 258 179 0 0 chr4 82365019 82365075 -73265045 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1213 289 287 99 26 chr4 82365083 82365296 -73264824 + L1M2 LINE L1 2142 2557 -4292 5 1213 605 299 120 11 chr4 82365553 82365928 -73264192 + L1M2 LINE L1 2836 3251 -3594 5 1213 254 235 0 0 chr4 82365961 82366012 -73264108 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1213 244 241 126 0 chr4 82366012 82366099 -73264021 + L1_Mur3 LINE L1 4164 4261 -1619 5 1213 651 184 96 0 chr4 82366658 82366783 -73263337 + B1_Mm SINE Alu 1 137 -10 5 1213 186 133 0 0 chr4 82366796 82366826 -73263294 + (GGA)n Simple_repeat Simple_repeat 2 31 0 5 1213 3603 38 28 5 chr4 82367675 82368101 -73262019 - RLTR10C LTR ERVK 0 436 1 5 1213 933 303 9 30 chr4 82369632 82369962 -73260158 + Lx5 LINE L1 6727 7049 -1 5 1213 379 242 102 7 chr4 82370857 82370967 -73259153 + B1F1 SINE Alu 1 117 0 5 1213 315 0 0 0 chr4 82371228 82371263 -73258857 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1213 678 197 35 62 chr4 82371610 82371887 -73258233 - RMER4B LTR ERVK -14 571 269 5 1213 226 256 12 12 chr4 82371937 82372020 -73258100 + (CAG)n Simple_repeat Simple_repeat 3 85 0 5 1213 654 114 157 15 chr4 82372036 82372170 -73257950 - RMER4B LTR ERVK -346 239 87 5 1213 1690 212 123 0 chr4 82372187 82372560 -73257560 - MTD LTR MaLR 0 419 1 5 1213 27 29 0 0 chr4 82372788 82372822 -73257298 + AT_rich Low_complexity Low_complexity 1 34 0 5 1213 264 190 17 0 chr4 82373159 82373217 -73256903 - MTEa LTR MaLR -320 59 1 5 1213 353 299 101 6 chr4 82373232 82373390 -73256730 - L1MB2 LINE L1 -112 6059 5887 5 1213 253 345 16 70 chr4 82373485 82373613 -73256507 + RSINE1 SINE B4 45 165 0 5 1213 22 35 0 0 chr4 82373633 82373662 -73256458 + AT_rich Low_complexity Low_complexity 1 29 0 5 1213 2346 72 171 0 chr4 82373910 82374296 -73255824 + RLTR44E LTR ERVK 1 452 0 5 1213 3463 28 5 0 chr4 82374358 82374752 -73255368 + MTA_Mm LTR MaLR 1 396 0 5 1213 2327 93 92 73 chr4 82375031 82375497 -73254623 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1213 413 294 60 92 chr4 82375801 82375898 -73254222 - ORR1D2 LTR MaLR 0 370 271 5 1213 1109 53 0 0 chr4 82375898 82376030 -73254090 + B1_Mus2 SINE Alu 2 133 -14 5 1213 194 0 39 0 chr4 82376031 82376057 -73254063 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1213 413 294 60 92 chr4 82376057 82376339 -73253781 - ORR1D2 LTR MaLR -100 270 1 5 1213 4989 211 72 22 chr4 82377017 82378507 -73251613 + Lx9 LINE L1 4763 6360 -1113 5 1213 2175 154 16 77 chr4 82378510 82379037 -73251083 + BGLII_B LTR ERVK 1 436 -5 5 1213 1236 222 29 29 chr4 82379231 82379537 -73250583 + Lx9 LINE L1 6508 6813 -831 5 1213 232 227 15 0 chr4 82379560 82379626 -73250494 + Lx9 LINE L1 7498 7564 -80 5 1213 189 0 0 0 chr4 82380044 82380065 -73250055 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1213 252 214 54 0 chr4 82380077 82380133 -73249987 + B1F SINE Alu 34 92 -57 5 1213 290 67 22 0 chr4 82380142 82380187 -73249933 + (GAAA)n Simple_repeat Simple_repeat 4 49 0 5 1213 203 248 38 0 chr4 82380190 82380295 -73249825 + GA-rich Low_complexity Low_complexity 1 109 0 5 1213 1263 60 0 0 chr4 82382052 82382267 -73247853 + (TG)n Simple_repeat Simple_repeat 1 215 0 5 1213 349 287 81 16 chr4 82383106 82383230 -73246890 + L1_Rod LINE L1 2947 3078 -2769 5 1213 180 111 0 0 chr4 82383230 82383257 -73246863 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1213 1246 302 56 24 chr4 82383261 82383963 -73246157 - Lx7 LINE L1 -1536 6160 5453 5 1213 39315 41 8 0 chr4 82383988 82390313 -73239807 - L1Md_T LINE L1 0 6582 275 5 1213 786 290 47 109 chr4 82390443 82390528 -73239592 - L1_Mur3 LINE L1 -434 5413 5329 5 1213 1179 90 79 0 chr4 82390528 82390705 -73239415 + B2_Mm2 SINE B2 2 192 -3 5 1213 1606 250 57 66 chr4 82390705 82390813 -73239307 - L1_Mur3 LINE L1 -513 5367 5262 5 1213 216 0 0 0 chr4 82390821 82390845 -73239275 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1213 1185 56 0 0 chr4 82390845 82390979 -73239141 - B1_Mm SINE Alu -8 139 6 5 1213 1606 236 60 50 chr4 82390979 82391399 -73238721 - L1_Mur3 LINE L1 -586 5294 4863 5 1213 4704 84 78 101 chr4 82391400 82392314 -73237806 + RLTR13B1 LTR ERVK 1 893 0 5 1213 25848 148 16 14 chr4 82392347 82396143 -73233977 - Lx LINE L1 0 6654 2870 5 1213 234 0 0 0 chr4 82396143 82396169 -73233951 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 5 1213 25848 134 26 13 chr4 82396169 82398220 -73231900 - Lx LINE L1 -3017 2869 785 5 1213 688 235 18 6 chr4 82398222 82398389 -73231731 - L1_Mur3 LINE L1 -1010 4870 4702 5 1213 1693 307 129 11 chr4 82398392 82399119 -73231001 + Lx8 LINE L1 6208 7020 -453 5 1213 198 0 0 0 chr4 82399267 82399289 -73230831 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1213 2963 57 48 0 chr4 82399313 82399685 -73230435 + RLTR10 LTR ERVK 1 390 0 5 1213 270 305 20 40 chr4 82399685 82399784 -73230336 + Lx8 LINE L1 7194 7290 -183 5 1213 2822 87 50 2 chr4 82400082 82400484 -73229636 + BGLII LTR ERVK 1 421 0 5 1213 626 37 0 12 chr4 82400580 82400662 -73229458 + (GGAAA)n Simple_repeat Simple_repeat 4 84 0 5 1213 351 113 0 0 chr4 82400662 82400715 -73229405 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 5 1213 710 84 9 0 chr4 82400717 82400824 -73229296 + (GAGAA)n Simple_repeat Simple_repeat 2 109 0 5 1213 365 283 29 14 chr4 82400828 82400968 -73229152 + L1M3 LINE L1 5353 5494 -677 5 1213 733 185 15 0 chr4 82400978 82401108 -73229012 + B1_Mus1 SINE Alu 2 133 -15 5 1213 576 87 0 0 chr4 82404044 82404136 -73225984 + (TC)n Simple_repeat Simple_repeat 1 92 0 5 1213 411 121 10 132 chr4 82404500 82404624 -73225496 + B1_Mur4 SINE Alu 40 149 -1 5 1213 1078 113 11 6 chr4 82404631 82404809 -73225311 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1213 305 311 9 70 chr4 82405281 82405395 -73224725 - B1F2 SINE Alu -8 141 35 5 1213 225 0 0 0 chr4 82405417 82405442 -73224678 + (CATA)n Simple_repeat Simple_repeat 1 25 0 5 1213 346 335 106 13 chr4 82405872 82406099 -73224021 - MLT1H LTR MaLR -298 251 4 5 1213 272 241 152 0 chr4 82406264 82406343 -73223777 + PB1D7 SINE Alu 23 113 -7 5 1213 239 189 132 0 chr4 82407000 82407053 -73223067 + HAL1 LINE L1 637 696 -1811 5 1213 362 295 150 40 chr4 82407053 82407226 -73222894 + B3A SINE B2 6 197 -1 5 1213 294 29 0 0 chr4 82407919 82407954 -73222166 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1213 724 122 122 0 chr4 82407954 82408085 -73222035 - Lx4A LINE L1 -4 7054 6908 5 1213 216 0 0 0 chr4 82408673 82408697 -73221423 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1213 192 111 0 0 chr4 82410302 82410338 -73219782 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1213 1250 27 7 0 chr4 82410340 82410486 -73219634 - B1_Mm SINE Alu 0 147 1 5 1213 369 0 0 0 chr4 82410754 82410795 -73219325 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1213 283 311 134 16 chr4 82410873 82411059 -73219061 - MIR SINE MIR -46 216 9 5 1213 911 96 14 7 chr4 82413305 82413452 -73216668 + URR1A DNA MER1_type 79 226 0 5 1213 535 261 13 25 chr4 82413789 82413946 -73216174 - RLTR11B LTR ERVK -15 438 284 5 1213 525 283 64 17 chr4 82414052 82414286 -73215834 - RLTR11B LTR ERVK -250 277 33 5 1213 339 299 84 56 chr4 82415299 82415823 -73214297 + L1MEc LINE L1 1353 1896 -4519 5 1213 397 279 235 4 chr4 82416112 82416346 -73213774 + MLT1A1 LTR MaLR 3 290 -118 5 1213 640 227 105 30 chr4 82416829 82417029 -73213091 - B3 SINE B2 -1 215 1 5 1213 3078 80 2 12 chr4 82417031 82417435 -73212685 - MTB LTR MaLR 0 400 1 5 1213 339 25 0 0 chr4 82417572 82417612 -73212508 + (TAA)n Simple_repeat Simple_repeat 1 40 0 5 1213 635 21 10 41 chr4 82417650 82417747 -73212373 + L1Md_F3 LINE L1 6481 6574 -10 5 1213 625 279 0 0 chr4 82417776 82417912 -73212208 + RSINE1 SINE B4 1 136 -29 5 1213 525 272 135 11 chr4 82417985 82418267 -73211853 + L1M5 LINE L1 5423 5739 -440 5 1213 38069 18 2 8 chr4 82418301 82423283 -73206837 + L1Md_A LINE L1 644 5586 -297 5 1213 8672 29 1 0 chr4 82423283 82424278 -73205842 + L1Md_A LINE L1 5587 6582 0 5 1213 338 319 194 0 chr4 82424896 82425040 -73205080 - B4 SINE B4 -2 290 119 5 1213 2796 184 5 39 chr4 82425567 82426127 -73203993 + L1VL4 LINE L1 228 768 -5534 5 1213 13125 110 30 9 chr4 82426155 82428773 -73201347 + L1VL4 LINE L1 138 2810 -749 5 1213 9391 148 28 10 chr4 82428778 82429098 -73201022 + Lx LINE L1 4268 4610 -1273 5 1213 1290 98 33 0 chr4 82429098 82429282 -73200838 - B2_Mm1t SINE B2 -3 190 1 5 1213 9391 126 23 6 chr4 82429282 82431302 -73198818 + Lx LINE L1 4611 6653 -1 5 1213 542 54 0 13 chr4 82431369 82431444 -73198676 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 5 1213 207 0 0 0 chr4 82431446 82431469 -73198651 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 5 1213 41291 14 3 6 chr4 82432044 82438392 -73191728 - L1Md_A LINE L1 0 6582 260 5 1213 268 273 13 0 chr4 82439561 82439638 -73190482 + Charlie1a DNA MER1_type 256 333 -1122 6 1213 260 262 58 23 chr4 82439863 82439949 -73190171 + Charlie1a DNA MER1_type 659 747 -708 6 1213 7619 55 35 7 chr4 82439960 82440962 -73189158 - L1_Mus1 LINE L1 0 6567 5538 6 1213 4346 80 0 0 chr4 82440959 82441525 -73188595 + L1_Mus1 LINE L1 4987 5552 -331 6 1213 2605 285 134 42 chr4 82441701 82441727 -73188393 - Lx8 LINE L1 -182 7291 7269 6 1213 1823 108 135 0 chr4 82441727 82442015 -73188105 - ORR1A2 LTR MaLR 0 327 1 6 1213 2605 285 134 42 chr4 82442015 82443093 -73187027 - Lx8 LINE L1 -205 7268 6085 6 1213 247 248 69 121 chr4 82443345 82443519 -73186601 - L1_Rod LINE L1 -136 5711 5547 6 1213 219 69 0 0 chr4 82443541 82443570 -73186550 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 6 1213 382 269 78 9 chr4 82443603 82443719 -73186401 - L1M2 LINE L1 -703 5588 5465 6 1213 469 250 101 26 chr4 82443730 82443919 -73186201 + Charlie1a DNA MER1_type 968 1170 -285 6 1213 372 253 85 1 chr4 82444020 82444146 -73185974 - B3A SINE B2 -12 204 70 6 1214 22 0 0 0 chr4 82444651 82444673 -73185447 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 372 119 0 0 chr4 82446027 82446086 -73184034 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1214 180 259 74 0 chr4 82446940 82446994 -73183126 - MIR SINE MIR -67 141 84 6 1214 305 287 139 0 chr4 82447579 82447680 -73182440 + PB1D10 SINE Alu 1 115 -2 6 1214 21 36 0 0 chr4 82447772 82447800 -73182320 + AT_rich Low_complexity Low_complexity 1 28 0 6 1214 23 33 0 0 chr4 82447990 82448020 -73182100 + AT_rich Low_complexity Low_complexity 1 30 0 6 1214 22 0 0 0 chr4 82448948 82448970 -73181150 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 250 241 0 102 chr4 82449181 82449269 -73180851 - RSINE1 SINE B4 -15 150 72 6 1214 21 0 0 0 chr4 82451891 82451912 -73178208 + AT_rich Low_complexity Low_complexity 1 21 0 6 1214 21 71 0 0 chr4 82453370 82453412 -73176708 + AT_rich Low_complexity Low_complexity 1 42 0 6 1214 829 156 31 0 chr4 82454241 82454401 -73175719 + URR1B DNA MER1_type 58 222 -3 6 1214 1271 182 5 18 chr4 82454559 82454783 -73175337 - URR1A DNA MER1_type 0 226 6 6 1214 261 75 0 0 chr4 82455051 82455091 -73175029 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1214 968 52 96 0 chr4 82455093 82455228 -73174892 - B1_Mus1 SINE Alu 0 148 1 6 1214 21 0 0 0 chr4 82456708 82456729 -73173391 + AT_rich Low_complexity Low_complexity 1 21 0 6 1214 429 170 219 52 chr4 82456733 82456888 -73173232 - B3A SINE B2 -16 182 2 6 1214 28 29 0 0 chr4 82457005 82457040 -73173080 + AT_rich Low_complexity Low_complexity 1 35 0 6 1214 1196 48 0 0 chr4 82457040 82457187 -73172933 + B1_Mus2 SINE Alu 1 147 0 6 1214 1465 56 6 0 chr4 82457189 82457369 -73172751 - B2_Mm2 SINE B2 -14 181 1 6 1214 21 0 0 0 chr4 82458826 82458847 -73171273 + AT_rich Low_complexity Low_complexity 1 21 0 6 1214 25 0 0 0 chr4 82458917 82458942 -73171178 + AT_rich Low_complexity Low_complexity 1 25 0 6 1214 1098 201 226 3 chr4 82459276 82459590 -73170530 - ORR1C2 LTR MaLR 0 384 1 6 1214 1684 58 132 8 chr4 82459722 82459965 -73170155 - Lx3_Mus LINE L1 0 7009 6737 6 1214 7612 86 19 16 chr4 82459965 82460295 -73169825 + Lx3_Mus LINE L1 5615 5943 -1066 6 1214 210 37 0 0 chr4 82460295 82460322 -73169798 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 6 1214 7612 86 19 16 chr4 82460322 82460419 -73169701 + Lx3_Mus LINE L1 5944 6034 -975 6 1214 432 0 0 0 chr4 82460419 82460467 -73169653 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 6 1214 7612 86 19 16 chr4 82460467 82461146 -73168974 + Lx3_Mus LINE L1 6035 6724 -285 6 1214 471 279 203 44 chr4 82462431 82462682 -73167438 - B4A SINE B4 0 292 2 6 1214 404 244 176 10 chr4 82463473 82463672 -73166448 + L1M5 LINE L1 5318 5549 -895 6 1214 260 282 143 5 chr4 82463738 82463955 -73166165 - L1MB8 LINE L1 -120 6058 5812 6 1214 660 264 152 19 chr4 82464198 82464507 -73165613 - L1MB8 LINE L1 -943 5203 4854 6 1214 1144 299 43 15 chr4 82464511 82464837 -73165283 + MER2 DNA MER2_type 6 340 -5 6 1214 312 267 11 0 chr4 82464845 82464935 -73165185 - L1MB8 LINE L1 -1327 4819 4729 6 1214 313 317 30 47 chr4 82465086 82465255 -73164865 - L1M5 LINE L1 -498 5626 5461 6 1214 1267 59 71 0 chr4 82465337 82465506 -73164614 - B2_Mm2 SINE B2 -14 181 1 6 1214 599 203 14 0 chr4 82466606 82466744 -73163376 + (CATA)n Simple_repeat Simple_repeat 3 142 0 6 1214 1036 62 0 0 chr4 82466789 82466917 -73163203 - B1_Mus1 SINE Alu -19 129 2 6 1214 495 0 0 0 chr4 82466933 82466988 -73163132 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1214 249 211 0 0 chr4 82467740 82467797 -73162323 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 6 1214 247 318 151 16 chr4 82468055 82468247 -73161873 + Tigger9b DNA MER2_type 47 264 -360 6 1214 232 283 114 38 chr4 82468383 82468515 -73161605 + Tigger9b DNA MER2_type 482 623 -1 6 1214 875 318 45 50 chr4 82468873 82469231 -73160889 + MLT1B LTR MaLR 30 385 -5 6 1214 378 0 0 0 chr4 82471785 82471827 -73158293 + (CATA)n Simple_repeat Simple_repeat 4 45 0 6 1214 3167 92 89 4 chr4 82472138 82472620 -73157500 + L1_Mus4 LINE L1 5882 6404 -232 6 1214 524 74 0 69 chr4 82472621 82472723 -73157397 + L1_Mus4 LINE L1 6544 6638 0 6 1214 21 36 0 0 chr4 82472869 82472897 -73157223 + AT_rich Low_complexity Low_complexity 1 28 0 6 1214 560 233 15 77 chr4 82473671 82473801 -73156319 + ID_B1 SINE B4 83 204 -20 6 1214 901 282 0 31 chr4 82474612 82474835 -73155285 - B3 SINE B2 0 216 1 6 1214 210 71 0 0 chr4 82474968 82474996 -73155124 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 6 1214 274 266 0 15 chr4 82476433 82476498 -73153622 + L1MEg LINE L1 335 398 -5686 6 1214 789 198 127 11 chr4 82476807 82476996 -73153124 + B3 SINE B2 1 211 -5 6 1214 397 266 184 34 chr4 82477030 82477644 -73152476 + L1MEg LINE L1 719 1424 -4660 6 1214 524 239 77 52 chr4 82478222 82478416 -73151704 - B4 SINE B4 0 292 94 6 1214 488 246 115 0 chr4 82478721 82478843 -73151277 - ID_B1 SINE B4 -7 217 82 6 1214 446 314 46 56 chr4 82478990 82479206 -73150914 - MER58A DNA MER1_type -8 216 3 6 1214 281 267 70 100 chr4 82479502 82479602 -73150518 + B1F SINE Alu 45 141 -8 6 1214 486 0 0 0 chr4 82479930 82479984 -73150136 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1214 333 0 0 0 chr4 82479984 82480020 -73150100 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1214 1039 173 31 53 chr4 82480318 82480544 -73149576 + URR1B DNA MER1_type 5 225 0 6 1214 323 252 71 53 chr4 82480598 82480711 -73149409 + PB1D10 SINE Alu 2 116 -1 6 1214 34 42 0 0 chr4 82480987 82481035 -73149085 + AT_rich Low_complexity Low_complexity 1 48 0 6 1214 22 0 0 0 chr4 82481094 82481116 -73149004 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 30 0 0 0 chr4 82482057 82482087 -73148033 + AT_rich Low_complexity Low_complexity 1 30 0 6 1214 24 32 0 0 chr4 82484597 82484628 -73145492 + AT_rich Low_complexity Low_complexity 1 31 0 6 1214 342 239 0 32 chr4 82484869 82484964 -73145156 - PB1D10 SINE Alu 0 117 26 6 1214 499 195 167 7 chr4 82485812 82485962 -73144158 - RCHARR1 DNA MER1_type 0 974 801 6 1214 932 257 38 0 chr4 82485984 82486245 -73143875 - RCHARR1 DNA MER1_type -212 762 492 6 1214 293 324 93 93 chr4 82486235 82486309 -73143811 - MT2B LTR ERVL -235 366 165 6 1214 623 244 0 8 chr4 82486309 82486437 -73143683 - B1F2 SINE Alu -22 127 1 6 1214 233 386 45 38 chr4 82486437 82486464 -73143656 - B4A SINE B4 -204 88 61 6 1214 744 277 105 107 chr4 82486475 82486552 -73143568 - RCHARR1 DNA MER1_type -553 421 347 6 1214 1327 100 21 0 chr4 82486552 82486742 -73143378 + B2_Mm2 SINE B2 2 195 0 6 1214 744 277 105 107 chr4 82486742 82487084 -73143036 - RCHARR1 DNA MER1_type -628 346 3 6 1214 601 194 37 0 chr4 82487306 82487414 -73142706 + B1_Mus2 SINE Alu 9 120 -27 6 1214 195 42 0 0 chr4 82487420 82487444 -73142676 + (TAA)n Simple_repeat Simple_repeat 3 26 0 6 1214 309 89 0 0 chr4 82487456 82487501 -73142619 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 6 1214 265 291 100 0 chr4 82487522 82487632 -73142488 + MTE-int LTR MaLR 90 210 -1370 6 1214 372 323 22 8 chr4 82488325 82488459 -73141661 - MER5B DNA MER1_type -3 175 40 6 1214 6936 48 15 0 chr4 82488573 82489432 -73140688 + L1Md_F2 LINE L1 5711 6582 0 6 1214 456 254 9 26 chr4 82490758 82490871 -73139249 - PB1D10 SINE Alu -1 116 6 6 1214 6598 141 43 12 chr4 82490991 82492164 -73137956 + MYSERV16_I-int LTR ERVK 936 2145 -181 6 1214 1245 41 0 0 chr4 82492194 82492341 -73137779 - B1_Mus1 SINE Alu 0 148 2 6 1214 2143 144 80 31 chr4 82492442 82492857 -73137263 + BGLII_B LTR ERVK 4 438 -3 6 1214 288 259 58 12 chr4 82493058 82493144 -73136976 + PB1D7 SINE Alu 23 112 -8 6 1214 207 0 0 0 chr4 82493148 82493171 -73136949 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 6 1214 282 194 60 0 chr4 82493870 82493937 -73136183 + L1ME3 LINE L1 5642 5712 -450 6 1214 225 306 62 18 chr4 82493968 82494081 -73136039 + L1ME3 LINE L1 5977 6094 -68 6 1214 226 276 12 95 chr4 82494455 82494539 -73135581 - MER5B DNA MER1_type 0 178 102 6 1214 211 341 162 22 chr4 82494679 82494901 -73135219 - L2c LINE L2 -42 3345 3093 6 1214 21 57 0 0 chr4 82495582 82495617 -73134503 + AT_rich Low_complexity Low_complexity 1 35 0 6 1214 253 265 0 0 chr4 82495924 82495973 -73134147 - B1F SINE Alu -10 139 91 6 1214 249 57 0 0 chr4 82497014 82497049 -73133071 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1214 293 292 97 67 chr4 82497666 82497831 -73132289 + L1MC LINE L1 5509 5678 -2204 6 1214 229 247 33 33 chr4 82498016 82498108 -73132012 + L1ME2z LINE L1 6213 6304 -140 6 1214 779 169 74 0 chr4 82498130 82498278 -73131842 - RMER4A LTR ERVK 0 466 308 6 1214 2040 142 159 17 chr4 82498280 82498377 -73131743 - RMER4A LTR ERVK 0 466 376 6 1214 573 55 0 0 chr4 82498377 82498450 -73131670 + (GGGGA)n Simple_repeat Simple_repeat 5 77 0 6 1214 2040 142 159 17 chr4 82498450 82498760 -73131360 - RMER4A LTR ERVK -91 375 1 6 1214 404 296 80 20 chr4 82499006 82499206 -73130914 + RLTR42-int LTR ERVK 1189 1400 -4122 6 1214 883 104 0 11 chr4 82500163 82500338 -73129782 + (CA)n Simple_repeat Simple_repeat 1 173 0 1 1214 351 0 0 0 chr4 82500349 82500388 -73129732 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1214 354 169 56 0 chr4 82500796 82500867 -73129253 - B3A SINE B2 -123 75 1 2 1214 703 264 0 30 chr4 82501898 82502066 -73128054 + RSINE1 SINE B4 3 165 0 3 1214 264 30 0 0 chr4 82503130 82503163 -73126957 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1214 307 206 0 0 chr4 82503440 82503508 -73126612 - ID4 SINE ID -5 78 11 5 1214 366 74 0 0 chr4 82504160 82504214 -73125906 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1214 198 299 23 11 chr4 82504590 82504678 -73125442 + MIRb SINE MIR 180 268 0 7 1214 185 306 112 69 chr4 82505828 82505944 -73124176 + MER5A DNA MER1_type 10 130 -59 8 1214 300 52 51 17 chr4 82506200 82506259 -73123861 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 9 1214 301 187 13 13 chr4 82507011 82507087 -73123033 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1214 450 65 0 0 chr4 82507111 82507173 -73122947 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1214 324 0 0 0 chr4 82507173 82507209 -73122911 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1214 186 43 0 0 chr4 82507274 82507297 -73122823 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1214 318 186 0 0 chr4 82507471 82507530 -73122590 - B1F1 SINE Alu -75 74 16 1 1214 268 254 0 0 chr4 82507485 82507548 -73122572 - B4A SINE B4 -147 145 83 1 1214 528 305 28 11 chr4 82507751 82507927 -73122193 + MER5A DNA MER1_type 6 184 -5 1 1214 2556 103 13 0 chr4 82508647 82509034 -73121086 - Lx2 LINE L1 -1 6996 6605 1 1214 269 282 0 0 chr4 82509044 82509115 -73121005 - ID4 SINE ID -11 72 2 1 1214 352 273 81 0 chr4 82509608 82509707 -73120413 - Charlie4z DNA MER1_type -1 166 60 1 1214 1213 54 0 0 chr4 82510702 82510849 -73119271 - B1_Mm SINE Alu 0 147 1 2 1214 303 246 29 0 chr4 82511353 82511422 -73118698 - tRNA-Ala-GCY_ tRNA tRNA -1 74 4 2 1214 425 292 1 12 chr4 82511422 82511540 -73118580 - PB1D10 SINE Alu -29 118 6 2 1214 5310 67 14 1 chr4 82511683 82512375 -73117745 + L1Md_F2 LINE L1 5880 6580 -2 2 1214 21 0 0 0 chr4 82512477 82512498 -73117622 + AT_rich Low_complexity Low_complexity 1 21 0 2 1214 534 285 111 49 chr4 82513764 82514070 -73116050 + RMER20B LTR ERVK 89 413 -214 2 1214 260 313 91 12 chr4 82514818 82514983 -73115137 - MER58B DNA MER1_type -2 339 162 2 1214 181 284 185 0 chr4 82515085 82515166 -73114954 + MIR SINE MIR 45 140 -122 2 1214 240 346 112 8 chr4 82515257 82515391 -73114729 + LTR84a LTR ERVL 543 690 -67 2 1214 4294 51 2 8 chr4 82516449 82516964 -73113156 - LTRIS3 LTR ERV1 0 512 1 2 1214 308 290 0 21 chr4 82518615 82518635 -73111485 + (CA)n Simple_repeat Simple_repeat 2 20 0 3 1214 276 30 0 0 chr4 82518635 82518668 -73111452 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1214 308 290 0 21 chr4 82518668 82518742 -73111378 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1214 299 231 171 27 chr4 82520055 82520166 -73109954 - B3A SINE B2 0 198 72 3 1214 206 62 31 0 chr4 82521812 82521844 -73108276 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 3 1214 224 310 0 0 chr4 82523084 82523155 -73106965 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1214 681 281 20 10 chr4 82523847 82524048 -73106072 - B3 SINE B2 -11 205 3 3 1214 490 254 49 0 chr4 82524498 82524620 -73105500 + ID_B1 SINE B4 90 217 -7 3 1214 328 335 94 45 chr4 82524657 82524901 -73105219 + MLT1I LTR MaLR 86 341 -70 3 1214 394 269 123 0 chr4 82525445 82525575 -73104545 - B4A SINE B4 -4 288 143 3 1214 966 134 0 0 chr4 82525578 82525837 -73104283 + (CA)n Simple_repeat Simple_repeat 1 259 0 4 1214 207 88 0 0 chr4 82525836 82525870 -73104250 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1214 284 330 138 0 chr4 82525870 82525979 -73104141 - B4A SINE B4 -168 124 1 3 1214 307 241 68 68 chr4 82528150 82528179 -73101941 - YREP_Mm Unknown Unknown -1485 327 182 4 1214 551 214 86 0 chr4 82528179 82528296 -73101824 + ID_B1 SINE B4 94 220 -4 4 1214 306 0 0 0 chr4 82528298 82528332 -73101788 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1214 532 73 12 12 chr4 82528332 82528415 -73101705 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1214 507 33 0 0 chr4 82531408 82531469 -73098651 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1214 507 17 0 0 chr4 82533972 82534032 -73096088 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1214 281 244 73 0 chr4 82534038 82534120 -73096000 - RSINE1 SINE B4 -34 131 44 4 1214 414 0 0 0 chr4 82534120 82534166 -73095954 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 4 1214 891 142 0 0 chr4 82534166 82534314 -73095806 + (TTTC)n Simple_repeat Simple_repeat 3 150 0 5 1214 297 0 0 0 chr4 82537571 82537604 -73092516 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1214 383 260 98 38 chr4 82538384 82538568 -73091552 + L1ME1 LINE L1 5852 6046 -133 5 1214 474 18 0 0 chr4 82538572 82538627 -73091493 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1214 749 92 65 24 chr4 82538648 82538771 -73091349 - B2_Mm2 SINE B2 -66 129 2 5 1214 321 250 0 13 chr4 82538844 82538921 -73091199 + ID_B1 SINE B4 140 215 -9 5 1214 258 32 0 0 chr4 82538921 82538952 -73091168 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1214 728 296 104 34 chr4 82539100 82539612 -73090508 + L1MC LINE L1 5177 5751 -540 5 1214 297 194 156 9 chr4 82539887 82539996 -73090124 - L1MEc LINE L1 -2850 3469 3345 5 1214 215 324 0 0 chr4 82540016 82540084 -73090036 - ID4 SINE ID 0 83 16 5 1214 408 282 47 41 chr4 82540220 82540237 -73089883 - L1MEc LINE L1 -3053 3266 3253 5 1214 480 210 180 31 chr4 82540237 82540365 -73089755 - B1_Mur2 SINE Alu -2 147 1 6 1214 572 313 93 43 chr4 82540365 82541194 -73088926 - L1MEc LINE L1 -3067 3252 2372 5 1214 1672 16 5 0 chr4 82541618 82541806 -73088314 + B2_Mm1a SINE B2 1 189 -4 6 1214 570 309 39 39 chr4 82541997 82542027 -73088093 - L1MB7 LINE L1 -15 6159 6129 6 1214 320 240 93 0 chr4 82542027 82542102 -73088018 + ID4_ SINE ID 1 82 -1 6 1214 711 309 39 39 chr4 82542102 82542354 -73087766 - L1MB7 LINE L1 -46 6128 5877 6 1214 353 86 17 0 chr4 82542473 82542531 -73087589 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1214 358 307 19 91 chr4 82542599 82542807 -73087313 - B4A SINE B4 -97 195 3 6 1214 202 353 0 19 chr4 82542877 82542981 -73087139 + MIR3 SINE MIR 105 206 -2 6 1214 1051 102 7 7 chr4 82543275 82543423 -73086697 + B1_Mus1 SINE Alu 1 148 0 6 1214 227 182 164 0 chr4 82543647 82543702 -73086418 + B4A SINE B4 83 146 -146 6 1214 349 228 87 19 chr4 82543656 82543759 -73086361 + PB1D9 SINE Alu 10 119 -1 6 1214 305 286 62 9 chr4 82546676 82546789 -73083331 - PB1D7 SINE Alu 0 120 2 7 1214 299 278 77 17 chr4 82546916 82547033 -73083087 + MIR SINE MIR 89 212 -50 7 1214 1184 188 40 71 chr4 82547033 82547318 -73082802 + Lx9 LINE L1 7306 7583 -61 7 1214 1291 150 56 5 chr4 82547318 82547532 -73082588 - URR1B DNA MER1_type 0 225 1 7 1214 1184 188 40 71 chr4 82547532 82547596 -73082524 + Lx9 LINE L1 7584 7644 0 7 1214 24 32 0 0 chr4 82547634 82547665 -73082455 + AT_rich Low_complexity Low_complexity 1 31 0 7 1214 902 235 15 10 chr4 82547682 82547884 -73082236 - B3 SINE B2 -10 206 4 7 1214 299 246 0 15 chr4 82549181 82549247 -73080873 - tRNA-Ala-GCA tRNA tRNA -9 66 2 7 1214 658 132 91 0 chr4 82549559 82549680 -73080440 + L1Md_F2 LINE L1 5478 5615 -553 7 1214 7965 53 12 2 chr4 82549680 82550666 -73079454 + L1Md_F2 LINE L1 5587 6582 0 7 1214 383 222 38 57 chr4 82550666 82550690 -73079430 + L1_Mur3 LINE L1 5582 5604 -276 7 1214 344 147 160 0 chr4 82550877 82550952 -73079168 - ID_B1 SINE B4 -6 218 132 7 1214 216 0 0 0 chr4 82550956 82550980 -73079140 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1214 36 23 0 0 chr4 82552349 82552392 -73077728 + AT_rich Low_complexity Low_complexity 1 43 0 8 1214 21 0 0 0 chr4 82554989 82555010 -73075110 + AT_rich Low_complexity Low_complexity 1 21 0 8 1214 21 0 0 0 chr4 82555157 82555178 -73074942 + AT_rich Low_complexity Low_complexity 1 21 0 8 1214 718 287 40 55 chr4 82555402 82555675 -73074445 + B4A SINE B4 4 272 -20 8 1214 306 0 0 0 chr4 82556098 82556132 -73073988 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1214 1021 180 24 5 chr4 82556184 82556391 -73073729 + URR1A DNA MER1_type 6 216 -10 8 1214 311 143 0 0 chr4 82556713 82556777 -73073343 + PB1 SINE Alu 65 149 0 8 1214 329 304 105 25 chr4 82557135 82557427 -73072693 - L1M5 LINE L1 -524 5655 5346 8 1214 247 262 16 16 chr4 82557484 82557546 -73072574 - RSINE1 SINE B4 -14 151 90 8 1214 280 257 97 35 chr4 82557619 82557764 -73072356 - L1M5 LINE L1 -849 5297 5144 8 1214 570 212 97 0 chr4 82558825 82558938 -73071182 - B1_Mus1 SINE Alu -24 124 1 9 1214 500 276 24 0 chr4 82561327 82561450 -73068670 + RSINE1 SINE B4 5 130 -35 9 1214 351 238 12 12 chr4 82561557 82561638 -73068482 - ID4_ SINE ID -1 82 2 9 1214 425 275 142 30 chr4 82564208 82564504 -73065616 - MER2 DNA MER2_type -1 344 16 9 1214 914 283 103 31 chr4 82566680 82567096 -73063024 + MLT1C LTR MaLR 1 446 -21 9 1214 22 35 0 0 chr4 82568332 82568361 -73061759 + AT_rich Low_complexity Low_complexity 1 29 0 9 1214 661 316 78 45 chr4 82571321 82571653 -73058467 - MER2 DNA MER2_type -2 343 1 9 1214 8616 26 0 0 chr4 82572084 82573295 -73056825 - L1Md_T LINE L1 0 6582 5372 9 1214 273 335 101 10 chr4 82574337 82574536 -73055584 - MER20 DNA MER1_type 0 219 3 9 1214 477 0 0 0 chr4 82574679 82574732 -73055388 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 151 1514 180 8 4 chr4 82575170 82575438 -73054682 - Lx2B LINE L1 -9 6991 6723 1 1215 306 305 52 22 chr4 82575498 82575632 -73054488 + MER20 DNA MER1_type 41 178 -41 1 1215 369 288 181 14 chr4 82576161 82576376 -73053744 + MIRb SINE MIR 4 254 -14 1 1215 381 43 0 0 chr4 82576703 82576750 -73053370 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1215 246 62 0 0 chr4 82576750 82576781 -73053339 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1215 610 119 0 38 chr4 82578469 82578574 -73051546 + BC1_Mm scRNA scRNA 4 104 -48 1 1215 216 0 0 0 chr4 82579226 82579250 -73050870 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 1 1215 1074 29 11 39 chr4 82579253 82579431 -73050689 + (TTC)n Simple_repeat Simple_repeat 2 174 0 1 1215 185 288 15 29 chr4 82579542 82579610 -73050510 + L2b LINE L2 3276 3342 -33 1 1215 507 313 126 0 chr4 82581021 82581219 -73048901 + ID_B1 SINE B4 2 224 0 1 1215 510 273 41 41 chr4 82582691 82582863 -73047257 + B4A SINE B4 121 292 0 1 1215 618 82 0 0 chr4 82583642 82583727 -73046393 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 1 1215 294 297 20 10 chr4 82585055 82585157 -73044963 + MIRb SINE MIR 96 198 -70 1 1215 899 288 81 10 chr4 82585202 82585511 -73044609 + Lx8 LINE L1 6998 7328 -145 1 1215 489 97 0 0 chr4 82585511 82585583 -73044537 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1215 1081 185 96 0 chr4 82585951 82586200 -73043920 + ORR1D1 LTR MaLR 3 275 -99 1 1215 293 257 0 14 chr4 82587050 82587141 -73042979 - ID4 SINE ID -47 105 19 1 1215 306 165 0 0 chr4 82587180 82587259 -73042861 + CT-rich Low_complexity Low_complexity 2 80 0 1 1215 213 336 17 26 chr4 82587544 82587660 -73042460 + MIR3 SINE MIR 72 186 -22 1 1215 808 272 154 46 chr4 82588142 82588492 -73041628 + MTD LTR MaLR 1 388 -31 1 1215 468 0 0 0 chr4 82588681 82588733 -73041387 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1215 1367 294 104 33 chr4 82589104 82589712 -73040408 - Lx8 LINE L1 -6 7467 6817 1 1215 822 292 56 4 chr4 82589821 82590055 -73040065 - Lx8 LINE L1 -677 6796 6551 1 1215 360 0 0 0 chr4 82590286 82590326 -73039794 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1215 387 0 0 0 chr4 82590668 82590711 -73039409 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1215 36 0 0 0 chr4 82590896 82590932 -73039188 + AT_rich Low_complexity Low_complexity 1 36 0 1 1215 235 288 14 0 chr4 82590948 82591021 -73039099 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1215 536 282 171 39 chr4 82591021 82591279 -73038841 - B4A SINE B4 0 292 1 1 1215 787 292 46 21 chr4 82594582 82594666 -73035454 + B4 SINE B4 1 86 -206 1 1215 453 62 0 0 chr4 82594666 82594731 -73035389 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 1 1215 787 292 46 21 chr4 82594731 82594929 -73035191 + B4 SINE B4 87 289 -3 1 1215 48 81 0 0 chr4 82596439 82596550 -73033570 + AT_rich Low_complexity Low_complexity 1 111 0 1 1215 975 118 58 6 chr4 82596557 82596728 -73033392 + Lx LINE L1 6474 6653 -1 1 1215 429 304 82 6 chr4 82596754 82596913 -73033207 + Lx9 LINE L1 6529 6699 -945 1 1215 1382 281 30 47 chr4 82596911 82597406 -73032714 + Lx9 LINE L1 6827 7456 -188 1 1215 591 53 0 0 chr4 82597406 82597481 -73032639 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1215 1068 358 33 24 chr4 82597481 82597618 -73032502 + Lx9 LINE L1 7328 7465 -8 1 1215 21 0 0 0 chr4 82597618 82597639 -73032481 + AT_rich Low_complexity Low_complexity 1 21 0 1 1215 997 260 48 40 chr4 82597642 82598018 -73032102 + MTEa LTR MaLR 1 379 0 1 1215 984 122 0 0 chr4 82598079 82598218 -73031902 - B1_Mus1 SINE Alu -8 140 2 1 1215 306 282 0 0 chr4 82598452 82598539 -73031581 + ID4_ SINE ID 11 97 -55 1 1215 1391 205 93 0 chr4 82598827 82599159 -73030961 + ORR1D1 LTR MaLR 12 374 0 1 1215 198 0 0 0 chr4 82599227 82599249 -73030871 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1215 189 74 0 0 chr4 82599249 82599275 -73030845 + (CG)n Simple_repeat Simple_repeat 1 27 0 1 1215 529 240 31 39 chr4 82599282 82599412 -73030708 - RSINE1 SINE B4 -33 132 4 1 1215 211 216 40 30 chr4 82599460 82599560 -73030560 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 1215 515 273 174 12 chr4 82599653 82599820 -73030300 - B3 SINE B2 -17 199 6 1 1215 905 201 92 5 chr4 82600333 82600528 -73029592 + B3 SINE B2 2 213 -3 1 1215 673 24 0 0 chr4 82600550 82600635 -73029485 + L1Md_T LINE L1 6498 6582 0 1 1215 284 0 23 0 chr4 82600635 82600678 -73029442 + L1Md_T LINE L1 6538 6581 -1 1 1215 23 0 0 0 chr4 82600688 82600711 -73029409 + AT_rich Low_complexity Low_complexity 1 23 0 1 1215 1224 192 138 67 chr4 82600999 82601390 -73028730 - MTD LTR MaLR 0 419 1 1 1215 264 30 0 0 chr4 82601873 82601906 -73028214 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1215 22 0 0 0 chr4 82602400 82602422 -73027698 + AT_rich Low_complexity Low_complexity 1 22 0 1 1215 315 203 0 0 chr4 82602802 82602871 -73027249 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1215 26 0 0 0 chr4 82603418 82603444 -73026676 + AT_rich Low_complexity Low_complexity 1 26 0 1 1215 203 247 33 22 chr4 82603635 82603726 -73026394 + GA-rich Low_complexity Low_complexity 4 95 0 1 1215 223 300 16 55 chr4 82604665 82604792 -73025328 + GA-rich Low_complexity Low_complexity 1 122 0 1 1215 658 246 83 12 chr4 82604975 82605144 -73024976 + B3A SINE B2 2 182 -16 1 1215 190 380 0 0 chr4 82605582 82605661 -73024459 - MIRc SINE MIR -37 231 153 1 1215 233 294 55 9 chr4 82606400 82606510 -73023610 - LTR16E1 LTR ERVL -7 531 417 1 1215 198 306 4 0 chr4 82607633 82607713 -73022407 + MIR SINE MIR 185 262 -6 1 1215 311 247 112 10 chr4 82607786 82607884 -73022236 - B1F SINE Alu -19 130 23 1 1215 1197 62 7 0 chr4 82608537 82608683 -73021437 + B1_Mm SINE Alu 1 147 0 1 1215 273 22 65 0 chr4 82608689 82608735 -73021385 + (TAAAA)n Simple_repeat Simple_repeat 3 51 0 1 1215 30 0 0 0 chr4 82609658 82609688 -73020432 + AT_rich Low_complexity Low_complexity 1 30 0 1 1215 24 53 0 0 chr4 82609946 82609984 -73020136 + AT_rich Low_complexity Low_complexity 1 38 0 1 1215 22 35 0 0 chr4 82610056 82610085 -73020035 + AT_rich Low_complexity Low_complexity 1 29 0 1 1215 1438 65 0 11 chr4 82610090 82610277 -73019843 + B2_Mm2 SINE B2 2 186 -9 1 1215 180 0 0 0 chr4 82610332 82610352 -73019768 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1215 316 231 20 99 chr4 82610385 82610486 -73019634 - PB1D10 SINE Alu -8 109 17 1 1215 519 244 0 36 chr4 82611683 82611823 -73018297 - L1MA7 LINE L1 -241 6050 5916 1 1215 276 270 106 20 chr4 82612349 82612500 -73017620 + RSINE1 SINE B4 2 165 0 1 1215 291 54 0 0 chr4 82612500 82612537 -73017583 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1215 818 134 214 39 chr4 82613349 82613527 -73016593 - B3 SINE B2 -3 213 5 1 1215 240 298 130 9 chr4 82614262 82614377 -73015743 - MIRb SINE MIR -119 149 21 1 1215 324 0 0 0 chr4 82614452 82614488 -73015632 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1215 187 286 115 35 chr4 82614606 82614693 -73015427 + MIR SINE MIR 90 183 -79 1 1215 294 233 0 0 chr4 82614754 82614827 -73015293 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1215 1585 58 16 0 chr4 82614904 82615094 -73015026 + B2_Mm2 SINE B2 1 193 -2 1 1215 353 356 74 0 chr4 82616748 82616883 -73013237 + RSINE1 SINE B4 2 146 -19 1 1215 296 252 9 0 chr4 82618834 82618941 -73011179 + G-rich Low_complexity Low_complexity 5 112 0 1 1215 391 333 78 22 chr4 82618973 82619111 -73011009 + Lx8 LINE L1 7187 7331 -142 1 1215 462 82 23 12 chr4 82619111 82619197 -73010923 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 1 1215 552 56 0 0 chr4 82619197 82619268 -73010852 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1215 391 333 78 22 chr4 82619268 82619398 -73010722 + Lx8 LINE L1 7332 7470 -3 1 1215 286 188 31 0 chr4 82619724 82619788 -73010332 + MADE2 DNA Mariner 1 66 -14 1 1215 536 284 182 4 chr4 82619820 82620089 -73010031 + MER2 DNA MER2_type 28 344 -1 1 1215 317 229 55 73 chr4 82620462 82620581 -73009539 + L1PB4 LINE L1 4059 4184 -1959 1 1215 1167 58 15 0 chr4 82620592 82620729 -73009391 + B1_Mur4 SINE Alu 5 143 -7 1 1215 538 200 0 29 chr4 82620730 82620869 -73009251 + GA-rich Low_complexity Low_complexity 4 138 0 1 1215 189 121 0 0 chr4 82620975 82621008 -73009112 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1215 6841 56 1 0 chr4 82621035 82621877 -73008243 + L1Md_F3 LINE L1 4744 5586 -297 1 1215 9013 29 2 1 chr4 82621877 82622873 -73007247 + L1Md_F3 LINE L1 5587 6583 -1 1 1215 309 272 186 38 chr4 82622929 82623095 -73007025 + L1PB4 LINE L1 4313 4518 -1625 1 1215 7939 57 16 12 chr4 82623095 82624056 -73006064 + L1Md_F2 LINE L1 5607 6570 -12 1 1215 309 272 186 38 chr4 82624056 82624126 -73005994 + L1PB4 LINE L1 4519 4584 -1559 1 1215 962 281 162 4 chr4 82624134 82624567 -73005553 + L1PB4 LINE L1 5388 5899 -401 1 1215 4795 194 22 31 chr4 82624844 82625821 -73004299 - Lx9 LINE L1 -167 7477 6509 1 1215 321 333 35 18 chr4 82625826 82625939 -73004181 - MTD LTR MaLR -304 115 1 1 1215 2438 73 6 0 chr4 82626468 82626785 -73003335 + ORR1A2 LTR MaLR 1 319 -8 1 1215 1272 323 61 70 chr4 82626789 82627164 -73002956 + ORR1E-int LTR MaLR 308 685 -895 1 1215 252 0 0 0 chr4 82627164 82627192 -73002928 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1215 1272 299 56 90 chr4 82627192 82627759 -73002361 + ORR1E-int LTR MaLR 55 987 -593 1 1215 2135 160 60 5 chr4 82627935 82628319 -73001801 - MTC LTR MaLR -12 409 5 1 1215 869 174 6 51 chr4 82628527 82628684 -73001436 - B1_Mur4 SINE Alu 0 150 1 1 1215 230 204 0 11 chr4 82630181 82630275 -72999845 + (TTGG)n Simple_repeat Simple_repeat 2 94 0 1 1215 231 411 56 58 chr4 82630463 82630856 -72999264 + L2b LINE L2 2984 3375 0 1 1215 213 39 0 0 chr4 82632620 82632646 -72997474 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1215 490 269 103 98 chr4 82632786 82633000 -72997120 + B3A SINE B2 1 215 -1 1 1215 367 266 149 0 chr4 82634486 82634580 -72995540 - PB1D10 SINE Alu -12 108 1 2 1215 201 86 65 65 chr4 82636391 82636453 -72993667 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 2 1215 324 0 0 0 chr4 82636757 82636793 -72993327 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1215 692 319 97 34 chr4 82638013 82638396 -72991724 + MLT1C LTR MaLR 61 467 0 2 1215 995 285 89 93 chr4 82638874 82639380 -72990740 + RLTR18B LTR ERVK 5 508 -4 2 1215 443 226 116 54 chr4 82640327 82640432 -72989688 + B1_Mur2 SINE Alu 4 115 -34 2 1215 378 61 0 0 chr4 82640432 82640481 -72989639 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1215 617 264 90 50 chr4 82641150 82641467 -72988653 + MLT1A1 LTR MaLR 10 368 -40 2 1215 772 288 112 35 chr4 82642477 82642790 -72987330 - MER2 DNA MER2_type -1 344 8 2 1215 675 226 12 207 chr4 82642969 82643215 -72986905 + B3A SINE B2 1 198 0 2 1215 180 111 0 0 chr4 82644544 82644571 -72985549 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 2 1215 1220 58 0 0 chr4 82645433 82645570 -72984550 + B1_Mus2 SINE Alu 3 139 -8 2 1215 294 50 0 0 chr4 82645570 82645610 -72984510 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 1215 1476 101 0 5 chr4 82645619 82645809 -72984311 + B2_Mm2 SINE B2 1 189 -6 2 1215 279 286 24 0 chr4 82646304 82646388 -72983732 - Tigger5 DNA MER2_type 0 2406 2321 2 1215 419 339 31 98 chr4 82646622 82646661 -72983459 + MLT2B1 LTR ERVL 190 230 -290 2 1215 566 28 14 0 chr4 82646661 82646733 -72983387 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 2 1215 705 24 0 0 chr4 82646740 82646823 -72983297 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1215 419 339 31 98 chr4 82646823 82647030 -72983090 + MLT2B1 LTR ERVL 238 426 -94 2 1215 351 0 0 0 chr4 82647031 82647070 -72983050 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1215 321 26 0 0 chr4 82647070 82647107 -72983013 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1215 496 319 76 0 chr4 82647201 82647345 -72982775 + MER5A DNA MER1_type 28 182 -7 2 1215 392 268 213 16 chr4 82647347 82647547 -72982573 - B4A SINE B4 -47 245 1 2 1215 210 222 0 0 chr4 82649020 82649074 -72981046 + GA-rich Low_complexity Low_complexity 4 57 0 2 1215 372 200 0 0 chr4 82650322 82650417 -72979703 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1215 467 211 53 69 chr4 82650520 82650708 -72979412 - L1MA5 LINE L1 0 6300 6116 2 1215 809 148 0 28 chr4 82650775 82650999 -72979121 + (TA)n Simple_repeat Simple_repeat 1 217 0 2 1215 276 322 134 20 chr4 82651022 82651171 -72978949 - B4A SINE B4 -9 283 118 2 1215 260 328 69 39 chr4 82651183 82651313 -72978807 + Charlie8 DNA MER1_type 123 256 -2172 2 1215 197 302 129 62 chr4 82652032 82652072 -72978048 + MIRb SINE MIR 28 67 -201 2 1215 632 255 112 20 chr4 82652072 82652268 -72977852 - B3 SINE B2 -2 214 1 2 1215 197 302 129 62 chr4 82652268 82652421 -72977699 + MIRb SINE MIR 68 234 -34 2 1215 513 84 0 0 chr4 82652838 82652909 -72977211 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 2 1215 408 345 133 51 chr4 82653331 82653743 -72976377 + LTR78 LTR ERV1 490 935 -369 2 1215 294 319 98 29 chr4 82653864 82654171 -72975949 + L1M6 LINE L1 1871 2198 -4298 2 1215 363 23 0 0 chr4 82654382 82654426 -72975694 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1215 25 31 0 0 chr4 82654539 82654571 -72975549 + AT_rich Low_complexity Low_complexity 1 32 0 2 1215 350 302 112 23 chr4 82654780 82655038 -72975082 + L1M6 LINE L1 4335 4615 -1785 2 1215 331 236 0 14 chr4 82655660 82655733 -72974387 + ID4 SINE ID 2 73 -10 2 1215 442 269 149 10 chr4 82656317 82656512 -72973608 - MIR SINE MIR -24 238 17 2 1215 1132 214 43 48 chr4 82657086 82657555 -72972565 + BGLII_B LTR ERVK 62 529 -24 2 1215 192 40 0 0 chr4 82657580 82657605 -72972515 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1215 1184 75 0 33 chr4 82658476 82658628 -72971492 + B1_Mus1 SINE Alu 2 148 0 2 1215 189 0 0 0 chr4 82658628 82658649 -72971471 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1215 207 161 34 51 chr4 82659214 82659273 -72970847 + T-rich Low_complexity Low_complexity 3 60 0 2 1215 418 286 9 45 chr4 82659273 82659383 -72970737 - RSINE1 SINE B4 -56 109 4 2 1215 678 259 30 37 chr4 82659417 82659581 -72970539 - RSINE1 SINE B4 0 165 3 2 1215 276 220 0 0 chr4 82660334 82660384 -72969736 + PB1 SINE Alu 78 127 0 2 1215 222 37 0 0 chr4 82660521 82660548 -72969572 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1215 231 299 39 0 chr4 82660968 82661045 -72969075 - MIRb SINE MIR -92 176 97 2 1215 1177 249 101 13 chr4 82661414 82661801 -72968319 - L1MB7 LINE L1 -168 6016 5596 2 1215 536 233 5 2 chr4 82662472 82662592 -72967528 + B1F2 SINE Alu 9 130 -20 2 1215 2163 188 100 29 chr4 82662592 82663080 -72967040 - RMER5 LTR ERV1 -11 523 1 2 1215 242 178 44 0 chr4 82663101 82663146 -72966974 - RMER5 LTR ERV1 -487 47 1 2 1215 255 167 0 0 chr4 82663149 82663191 -72966929 + B1F SINE Alu 106 147 -2 2 1215 219 157 0 0 chr4 82663901 82663952 -72966168 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 2 1215 243 0 0 0 chr4 82665187 82665214 -72964906 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1215 216 0 0 0 chr4 82665233 82665257 -72964863 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1215 317 277 21 0 chr4 82665428 82665436 -72964684 + (CATA)n Simple_repeat Simple_repeat 1 8 0 2 1215 333 0 0 0 chr4 82665436 82665473 -72964647 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1215 317 277 21 0 chr4 82665473 82665558 -72964562 + (CATA)n Simple_repeat Simple_repeat 1 87 0 2 1215 207 69 0 0 chr4 82665752 82665781 -72964339 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2 1215 211 293 0 17 chr4 82665788 82665847 -72964273 + CT-rich Low_complexity Low_complexity 6 63 0 2 1215 577 274 78 0 chr4 82666132 82666285 -72963835 + RSINE1 SINE B4 1 165 0 2 1215 261 0 0 0 chr4 82669126 82669155 -72960965 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 1215 351 254 107 0 chr4 82669251 82669373 -72960747 - RSINE1 SINE B4 -29 136 2 2 1215 186 43 0 0 chr4 82669487 82669510 -72960610 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2 1215 282 296 142 36 chr4 82669868 82670116 -72960004 + MLT1E1A LTR MaLR 382 678 -2 2 1215 284 312 149 18 chr4 82670122 82670344 -72959776 + L2 LINE L2 2631 2881 -538 2 1215 1640 194 107 8 chr4 82670997 82671371 -72958749 + MTD LTR MaLR 1 411 -8 2 1215 985 222 182 6 chr4 82671788 82672101 -72958019 - MTD LTR MaLR 0 419 52 2 1215 216 0 0 0 chr4 82672323 82672347 -72957773 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1215 1250 34 0 0 chr4 82672347 82672494 -72957626 - B1_Mm SINE Alu 0 147 1 2 1215 315 0 0 0 chr4 82672668 82672703 -72957417 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1215 1658 222 150 5 chr4 82672746 82673167 -72956953 + Lx8 LINE L1 6854 7335 -138 2 1215 645 290 17 6 chr4 82673202 82673357 -72956763 + B3 SINE B2 13 169 -47 2 1215 423 0 0 0 chr4 82673357 82673404 -72956716 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1215 645 290 17 6 chr4 82673404 82673425 -72956695 + B3 SINE B2 170 190 -26 2 1215 21 0 0 0 chr4 82673521 82673542 -72956578 + AT_rich Low_complexity Low_complexity 1 21 0 2 1215 226 326 87 0 chr4 82673622 82673714 -72956406 + MLT1J LTR MaLR 116 215 -297 2 1215 516 246 127 26 chr4 82673729 82674029 -72956091 - MTD LTR MaLR -48 371 9 2 1215 1194 139 264 14 chr4 82674346 82674638 -72955482 - ORR1B2 LTR MaLR 0 367 3 2 1215 818 178 397 26 chr4 82674965 82675261 -72954859 - MTD LTR MaLR 0 419 14 2 1215 211 283 0 0 chr4 82675660 82675720 -72954400 + A-rich Low_complexity Low_complexity 3 62 0 2 1215 281 299 84 0 chr4 82676915 82677022 -72953098 - B1F1 SINE Alu -4 123 8 2 1215 25 31 0 0 chr4 82678161 82678193 -72951927 + AT_rich Low_complexity Low_complexity 1 32 0 2 1215 201 297 0 0 chr4 82678304 82678378 -72951742 - MIR SINE MIR -57 205 132 2 1215 1284 53 0 0 chr4 82679285 82679514 -72950606 + (TG)n Simple_repeat Simple_repeat 1 229 0 2 1215 7722 155 38 32 chr4 82680431 82681935 -72948185 + Lx5 LINE L1 5504 7046 -4 2 1215 870 294 78 58 chr4 82683002 82683169 -72946951 + Lx8 LINE L1 6643 6805 -668 2 1215 986 70 78 0 chr4 82683169 82683297 -72946823 - B1_Mus1 SINE Alu -10 138 1 2 1215 870 294 78 58 chr4 82683297 82683526 -72946594 + Lx8 LINE L1 6806 7047 -426 2 1215 400 202 38 9 chr4 82683580 82683685 -72946435 + RLTR10A LTR ERVK 140 247 -164 2 1215 302 212 15 0 chr4 82683750 82683816 -72946304 + RLTR10A LTR ERVK 345 411 0 2 1215 249 371 23 29 chr4 82683872 82684044 -72946076 + Lx8 LINE L1 7056 7226 -247 2 1215 267 380 0 0 chr4 82684051 82684151 -72945969 + RMER15 LTR ERVL 371 470 -105 2 1215 238 265 250 12 chr4 82684391 82684563 -72945557 - MIR SINE MIR -6 256 44 2 1215 267 133 0 0 chr4 82684859 82684904 -72945216 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1215 341 230 45 22 chr4 82684920 82685009 -72945111 - B1F SINE Alu -44 105 15 2 1215 804 254 19 14 chr4 82685490 82685702 -72944418 + ID_B1 SINE B4 2 214 -10 2 1215 399 245 100 31 chr4 82685707 82685867 -72944253 + L1MC2 LINE L1 6062 6232 -112 2 1215 25 31 0 0 chr4 82685868 82685900 -72944220 + AT_rich Low_complexity Low_complexity 1 32 0 2 1215 840 236 60 0 chr4 82685903 82686102 -72944018 - B3 SINE B2 -3 213 3 2 1215 2607 170 39 12 chr4 82686120 82686633 -72943487 + RLTR11A LTR ERVK 2 528 0 2 1215 4787 107 28 13 chr4 82687284 82687996 -72942124 - Lx LINE L1 0 6654 5932 2 1215 1580 114 0 0 chr4 82687997 82688224 -72941896 + Lx LINE L1 5696 5922 -714 2 1215 582 214 221 64 chr4 82688255 82688490 -72941630 + B4 SINE B4 5 276 -16 2 1215 422 36 18 0 chr4 82688509 82688565 -72941555 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1215 790 250 0 16 chr4 82688588 82688771 -72941349 + B3A SINE B2 1 180 -18 2 1215 202 246 54 14 chr4 82689218 82689292 -72940828 - MER5B DNA MER1_type -77 101 25 3 1215 195 225 0 0 chr4 82689826 82689897 -72940223 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1215 234 0 0 0 chr4 82690515 82690541 -72939579 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1215 859 28 0 0 chr4 82690541 82690650 -72939470 - B1_Mus2 SINE Alu -8 139 31 3 1215 199 26 0 95 chr4 82692632 82692674 -72937446 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 3 1215 254 365 48 37 chr4 82692718 82692906 -72937214 + L3 LINE CR1 3590 3779 -710 3 1215 238 389 32 0 chr4 82693443 82693569 -72936551 + L2b LINE L2 3244 3373 -2 3 1215 750 23 0 0 chr4 82695184 82695272 -72934848 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 1215 495 0 0 0 chr4 82696740 82696795 -72933325 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1215 229 171 0 0 chr4 82696816 82696857 -72933263 - PB1D10 SINE Alu -26 91 51 3 1215 468 0 0 0 chr4 82698332 82698384 -72931736 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1215 927 61 15 0 chr4 82699381 82699513 -72930607 + B1_Mus2 SINE Alu 14 147 0 3 1215 416 203 8 88 chr4 82699572 82699812 -72930308 + A-rich Low_complexity Low_complexity 1 220 0 3 1215 1179 229 72 33 chr4 82700793 82701127 -72928993 - MTD LTR MaLR -55 364 18 3 1215 498 241 55 7 chr4 82701144 82701290 -72928830 - MTD-int LTR MaLR 0 1258 1106 3 1215 3198 168 37 12 chr4 82701494 82702062 -72928058 + Lx5 LINE L1 6468 7049 -1 3 1215 1220 264 80 67 chr4 82702065 82702625 -72927495 - MTD-int LTR MaLR -359 1221 605 3 1215 1242 135 85 19 chr4 82703315 82703526 -72926594 - URR1A DNA MER1_type 0 226 2 3 1215 28 48 0 0 chr4 82704411 82704453 -72925667 + AT_rich Low_complexity Low_complexity 1 42 0 3 1215 976 269 74 72 chr4 82704491 82705100 -72925020 + L1MA5 LINE L1 5324 5931 -369 3 1215 3646 13 0 0 chr4 82705300 82705696 -72924424 - MTA_Mm LTR MaLR 0 396 1 3 1215 2708 147 2 14 chr4 82705909 82706331 -72923789 + MTC LTR MaLR 3 419 -2 3 1216 1395 211 78 9 chr4 82707523 82707867 -72922253 - ORR1D2 LTR MaLR -2 368 1 3 1216 239 362 57 14 chr4 82708905 82708953 -72921167 - B1_Mur3 SINE Alu -3 146 94 3 1216 450 0 0 0 chr4 82708953 82709003 -72921117 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1216 252 0 0 0 chr4 82709003 82709030 -72921090 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1216 239 362 57 14 chr4 82709030 82709120 -72921000 - B1_Mur3 SINE Alu -56 93 2 3 1216 383 295 90 1 chr4 82709921 82710081 -72920039 - L1M5 LINE L1 -394 5770 5599 3 1216 1021 285 89 0 chr4 82710167 82710581 -72919539 + Charlie1b DNA MER1_type 28 478 -45 3 1216 296 344 32 25 chr4 82710851 82711009 -72919111 - MIRc SINE MIR -89 179 21 3 1216 2595 198 82 19 chr4 82711073 82711656 -72918464 + L1VL4 LINE L1 191 810 -5492 3 1216 39340 9 0 2 chr4 82711655 82718055 -72912065 + L1Md_A LINE L1 1 5586 -297 3 1216 9177 4 0 0 chr4 82718055 82719051 -72911069 + L1Md_A LINE L1 5587 6582 0 3 1216 21 0 0 0 chr4 82719051 82719072 -72911048 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 9693 138 110 6 chr4 82719072 82721107 -72909013 + MusHAL1 LINE L1 1151 3414 -2469 3 1216 2653 84 53 2 chr4 82721106 82721522 -72908598 + MusHAL1 LINE L1 1776 2212 -500 3 1216 10517 142 41 9 chr4 82721520 82723357 -72906763 + L1_Mm LINE L1 2980 4875 -1008 3 1216 341 345 28 0 chr4 82724267 82724412 -72905708 + B1F SINE Alu 1 149 0 3 1216 2866 194 73 192 chr4 82724927 82726085 -72904035 + RMER1B Other Other 45 1065 -1 3 1216 223 204 20 0 chr4 82726086 82726135 -72903985 + GA-rich Low_complexity Low_complexity 2 51 0 3 1216 305 273 149 28 chr4 82727292 82727473 -72902647 - MER57F LTR ERV1 -100 336 134 3 1216 216 319 209 0 chr4 82727902 82727993 -72902127 - RSINE1 SINE B4 0 165 56 3 1216 3453 273 79 11 chr4 82728006 82729059 -72901061 + Lx8 LINE L1 6191 7314 -159 3 1216 2419 157 66 0 chr4 82729091 82729486 -72900634 + MTC LTR MaLR 1 421 0 3 1216 308 148 0 0 chr4 82729489 82729543 -72900577 + Lx8 LINE L1 7420 7473 0 3 1216 23 0 0 0 chr4 82729677 82729700 -72900420 + AT_rich Low_complexity Low_complexity 1 23 0 3 1216 2426 189 41 15 chr4 82730112 82730574 -72899546 + Lx5 LINE L1 6574 7047 -3 3 1216 262 236 43 11 chr4 82730607 82730701 -72899419 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 3 1216 307 301 176 29 chr4 82730962 82731338 -72898782 - L1MC LINE L1 -2146 5736 5306 3 1216 185 245 57 0 chr4 82732075 82732128 -72897992 + MER5B DNA MER1_type 59 114 -64 3 1216 655 294 68 50 chr4 82732509 82732892 -72897228 + L1ME3 LINE L1 5606 5995 -167 3 1216 3667 139 16 95 chr4 82732913 82733726 -72896394 - RMER17A LTR ERVK 0 751 3 3 1216 286 173 92 13 chr4 82733729 82733805 -72896315 + L1ME3 LINE L1 6077 6158 -4 3 1216 520 315 44 68 chr4 82734905 82735009 -72895111 + L1MB5 LINE L1 5793 5902 -272 3 1216 1479 195 134 11 chr4 82735009 82735382 -72894738 + MTD LTR MaLR 1 419 0 3 1216 520 315 44 68 chr4 82735382 82735517 -72894603 + L1MB5 LINE L1 5903 6027 -147 3 1216 6065 128 14 8 chr4 82735517 82736467 -72893653 - RMER17B LTR ERVK -3 955 1 3 1216 520 315 44 68 chr4 82736467 82736611 -72893509 + L1MB5 LINE L1 6028 6168 -6 3 1216 454 282 121 45 chr4 82737530 82737753 -72892367 - Lx8 LINE L1 -9 7464 7225 3 1216 1130 299 47 37 chr4 82737827 82738257 -72891863 - Lx8 LINE L1 -955 6518 6085 3 1216 588 289 101 28 chr4 82739728 82740055 -72890065 + L1MA6 LINE L1 5714 6064 -236 3 1216 183 86 69 28 chr4 82741670 82741710 -72888410 + T-rich Low_complexity Low_complexity 37 75 0 3 1216 204 40 0 0 chr4 82741710 82741735 -72888385 + (TGG)n Simple_repeat Simple_repeat 1 25 0 3 1216 183 86 69 28 chr4 82741735 82741766 -72888354 + T-rich Low_complexity Low_complexity 2 36 0 3 1216 1829 181 3 8 chr4 82742055 82742407 -72887713 - RLTR14 LTR ERV1 0 382 33 3 1216 312 229 0 0 chr4 82743798 82743881 -72886239 + GA-rich Low_complexity Low_complexity 1 83 0 3 1216 288 260 48 9 chr4 82745798 82745903 -72884217 - ORR1E LTR MaLR -2 377 269 3 1216 335 238 39 29 chr4 82746084 82746188 -72883932 - ORR1E LTR MaLR -240 119 15 3 1216 491 265 13 20 chr4 82746302 82746452 -72883668 + B1F2 SINE Alu 1 149 0 3 1216 615 250 114 21 chr4 82746472 82746709 -72883411 + RCHARR1 DNA MER1_type 491 749 -225 3 1216 1574 153 66 0 chr4 82746711 82747012 -72883108 + MTC LTR MaLR 101 421 0 3 1216 640 219 126 21 chr4 82748603 82748794 -72881326 - B3 SINE B2 -1 215 5 3 1216 253 291 61 30 chr4 82749117 82749248 -72880872 + MER112 DNA MER1_type 4 138 -123 3 1216 359 204 10 111 chr4 82749235 82749334 -72880786 + RSINE1 SINE B4 77 165 0 3 1216 741 79 0 0 chr4 82749840 82749941 -72880179 + (GGA)n Simple_repeat Simple_repeat 3 103 0 3 1216 522 77 55 0 chr4 82751162 82751253 -72878867 + (AGGGGG)n Simple_repeat Simple_repeat 2 97 0 3 1216 1484 169 94 3 chr4 82751417 82751726 -72878394 - ORR1C1 LTR MaLR -41 337 1 3 1216 391 291 138 55 chr4 82751797 82752015 -72878105 - MER21B LTR ERV1 -273 590 355 3 1216 369 317 51 115 chr4 82752068 82752321 -72877799 - MER21B LTR ERV1 -626 237 1 3 1216 383 204 23 117 chr4 82753498 82753594 -72876526 + PB1D10 SINE Alu 13 105 -44 3 1216 189 0 0 0 chr4 82753594 82753615 -72876505 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1216 376 200 25 125 chr4 82753615 82753645 -72876475 + B1F SINE Alu 106 127 -22 3 1216 17711 137 26 97 chr4 82755210 82761879 -72868241 - L1_Mus1 LINE L1 0 6567 531 3 1216 269 324 192 19 chr4 82762342 82762654 -72867466 - LTR40c LTR ERVL -27 438 73 3 1216 567 248 70 0 chr4 82763293 82763422 -72866698 + RSINE1 SINE B4 26 163 -2 3 1216 210 143 0 0 chr4 82763422 82763457 -72866663 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1216 663 201 36 29 chr4 82763643 82763781 -72866339 + B1F SINE Alu 11 149 0 3 1216 259 117 78 0 chr4 82763925 82764028 -72866092 + (TA)n Simple_repeat Simple_repeat 2 112 0 3 1216 465 273 162 38 chr4 82764114 82764274 -72865846 + B3A SINE B2 2 181 -17 3 1216 24 0 0 0 chr4 82764603 82764627 -72865493 + AT_rich Low_complexity Low_complexity 1 24 0 3 1216 208 238 37 24 chr4 82764785 82764867 -72865253 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 3 1216 1959 287 95 21 chr4 82764901 82765659 -72864461 + Lx8 LINE L1 6293 7106 -367 3 1216 441 0 0 0 chr4 82765708 82765757 -72864363 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 3 1216 405 282 32 49 chr4 82765818 82765941 -72864179 + Tigger5 DNA MER2_type 25 145 -2261 3 1216 415 288 89 0 chr4 82765950 82766096 -72864024 + Tigger5 DNA MER2_type 2241 2399 -7 3 1216 320 282 21 78 chr4 82766322 82766464 -72863656 + RSINE1 SINE B4 15 148 -17 3 1216 1033 269 24 15 chr4 82766478 82766806 -72863314 + RCHARR1 DNA MER1_type 519 849 -125 3 1216 724 189 0 23 chr4 82766835 82766965 -72863155 - B1_Mur1 SINE Alu -1 148 22 3 1216 254 164 18 0 chr4 82767009 82767064 -72863056 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1216 515 256 122 89 chr4 82767134 82767348 -72862772 + ID_B1 SINE B4 3 223 -1 3 1216 866 132 0 0 chr4 82767446 82767575 -72862545 + MurSatRep1 Unknown Unknown 612 740 -1397 3 1216 382 156 0 0 chr4 82767571 82767635 -72862485 + MurSatRep1 Unknown Unknown 943 1006 -1131 3 1216 225 0 0 0 chr4 82768228 82768253 -72861867 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1216 673 165 17 30 chr4 82769648 82769833 -72860287 - B3 SINE B2 -9 186 7 3 1216 884 279 192 29 chr4 82769997 82770679 -72859441 - L1MC4a LINE L1 -76 7806 7014 3 1216 396 229 220 0 chr4 82770685 82770803 -72859317 + MTE2b LTR MaLR 7 150 -229 3 1216 308 242 161 39 chr4 82770817 82770972 -72859148 + MTE2b LTR MaLR 194 367 -12 3 1216 559 275 153 70 chr4 82771017 82771610 -72858510 - L1MC4a LINE L1 -1080 6962 6315 3 1216 14320 72 18 28 chr4 82771615 82774291 -72855829 + L1VL2 LINE L1 344 2989 -626 3 1216 25 65 0 0 chr4 82774439 82774485 -72855635 + AT_rich Low_complexity Low_complexity 1 46 0 3 1216 1191 68 0 0 chr4 82774491 82774637 -72855483 + B1_Mus1 SINE Alu 1 146 -2 3 1216 228 86 0 0 chr4 82774640 82774675 -72855445 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1216 691 317 82 53 chr4 82774765 82775105 -72855015 - ORR1E LTR MaLR 0 359 10 3 1216 578 264 88 14 chr4 82775335 82775696 -72854424 - L1ME1 LINE L1 -396 5963 5569 3 1216 317 214 36 125 chr4 82776094 82776206 -72853914 - RSINE1 SINE B4 -62 103 2 3 1216 648 285 36 59 chr4 82776363 82776669 -72853451 + ORR1E LTR MaLR 55 353 -6 4 1216 6881 68 7 5 chr4 82776811 82778138 -72851982 + L1Md_A LINE L1 382 1717 -4166 4 1216 8775 18 14 0 chr4 82778138 82779136 -72850984 + L1Md_T LINE L1 4575 5586 -297 4 1216 8047 36 38 0 chr4 82779136 82780096 -72850024 + L1Md_T LINE L1 5587 6582 0 4 1216 30159 54 6 28 chr4 82780104 82784074 -72846046 + L1Md_A LINE L1 1703 5586 -297 4 1216 8994 14 0 0 chr4 82784074 82785070 -72845050 + L1Md_A LINE L1 5587 6582 0 4 1216 10339 54 19 1 chr4 82785070 82786356 -72843764 + L1Md_F2 LINE L1 4277 5586 -297 4 1216 8302 40 10 1 chr4 82786356 82787343 -72842777 + L1Md_F2 LINE L1 5587 6582 0 4 1216 1170 22 0 0 chr4 82787415 82787552 -72842568 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1216 398 241 79 72 chr4 82787555 82787707 -72842413 + MLT1A0 LTR MaLR 197 349 -16 4 1216 401 238 102 64 chr4 82788076 82788233 -72841887 + RSINE1 SINE B4 3 165 0 4 1216 1693 21 0 0 chr4 82788287 82788479 -72841641 + B2_Mm1a SINE B2 2 193 0 4 1216 551 240 25 136 chr4 82788592 82788828 -72841292 - B3 SINE B2 -4 212 3 4 1216 1347 294 126 39 chr4 82789334 82790000 -72840120 + Lx8 LINE L1 6438 7161 -312 4 1216 431 185 11 0 chr4 82790111 82790203 -72839917 + GA-rich Low_complexity Low_complexity 4 96 0 4 1216 297 167 0 0 chr4 82790277 82790331 -72839789 + GA-rich Low_complexity Low_complexity 2 55 0 4 1216 180 111 0 0 chr4 82791040 82791067 -72839053 + (TGG)n Simple_repeat Simple_repeat 3 29 0 4 1216 217 276 0 0 chr4 82792260 82792318 -72837802 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1216 2506 208 67 30 chr4 82792320 82792978 -72837142 - RLTR40 LTR ERVK -135 682 1 4 1216 978 90 32 6 chr4 82794228 82794385 -72835735 + B2_Mm2 SINE B2 35 195 0 4 1216 1163 131 130 5 chr4 82794551 82794751 -72835369 + URR1A DNA MER1_type 2 226 0 4 1216 869 214 11 22 chr4 82796714 82796896 -72833224 - RLTR40 LTR ERVK -16 801 622 4 1216 612 210 71 36 chr4 82796895 82797063 -72833057 - RLTR40 LTR ERVK -643 174 1 4 1216 234 0 0 0 chr4 82797244 82797270 -72832850 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1216 594 149 132 0 chr4 82797270 82797391 -72832729 - B1_Mur4 SINE Alu -13 137 1 4 1216 423 92 0 15 chr4 82797411 82797477 -72832643 - ORR1A3 LTR MaLR 0 326 262 4 1216 317 287 64 20 chr4 82797536 82797785 -72832335 + L1MA6 LINE L1 3254 3513 -2627 4 1216 301 340 20 0 chr4 82797893 82797993 -72832127 + RSINE1 SINE B4 49 150 -15 4 1216 315 0 0 0 chr4 82798008 82798043 -72832077 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1216 347 255 191 20 chr4 82798062 82798189 -72831931 + L1MA6 LINE L1 3508 3668 -2472 4 1216 270 0 0 0 chr4 82798189 82798219 -72831901 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1216 347 255 191 20 chr4 82798219 82798295 -72831825 + L1MA6 LINE L1 3669 3746 -2394 4 1216 900 150 7 0 chr4 82798303 82798443 -72831677 + B1_Mur2 SINE Alu 3 143 -6 4 1216 633 199 0 0 chr4 82798443 82798574 -72831546 + (TAGG)n Simple_repeat Simple_repeat 1 131 0 4 1216 287 283 11 21 chr4 82798712 82798806 -72831314 + PB1D10 SINE Alu 14 106 -11 4 1216 262 206 159 14 chr4 82798820 82798889 -72831231 + ID4 SINE ID 5 83 0 4 1216 229 241 19 0 chr4 82798931 82798985 -72831135 + ORR1D2 LTR MaLR 5 59 -311 4 1216 463 215 74 0 chr4 82799016 82799137 -72830983 + ORR1D2 LTR MaLR 239 368 -2 4 1216 773 262 113 17 chr4 82799137 82799483 -72830637 + L1MA6 LINE L1 3813 4191 -1949 4 1216 552 292 58 21 chr4 82799547 82799736 -72830384 + B4A SINE B4 5 200 -92 4 1216 799 303 28 4 chr4 82799871 82800126 -72829994 + L1M3 LINE L1 4797 5057 -1083 4 1216 252 224 8 101 chr4 82800176 82800295 -72829825 + L1MA6 LINE L1 4352 4459 -1684 4 1216 1122 100 50 0 chr4 82800833 82801013 -72829107 - B2_Mm2 SINE B2 -1 194 6 4 1216 1106 284 77 48 chr4 82801399 82801984 -72828136 + L1MA6 LINE L1 4558 5159 -984 4 1216 1021 65 0 0 chr4 82802047 82802186 -72827934 - RMER19A LTR ERVK 0 737 599 4 1216 4445 12 2 12 chr4 82802189 82802687 -72827433 - MT2_Mm LTR ERVL 0 493 1 4 1216 321 0 0 0 chr4 82802687 82802725 -72827395 - MERVL-int LTR ERVL 0 5485 5448 4 1216 362 167 46 35 chr4 82802725 82802812 -72827308 - ORR1A3-int LTR MaLR -1323 640 553 4 1216 49012 14 0 0 chr4 82802812 82808171 -72821949 - MERVL-int LTR ERVL -125 5360 1 4 1216 4445 12 2 12 chr4 82808171 82808669 -72821451 - MT2_Mm LTR ERVL 0 493 1 4 1216 2642 118 236 2 chr4 82808669 82809153 -72820967 - RMER19A LTR ERVK -138 599 3 4 1216 309 238 0 0 chr4 82809155 82809218 -72820902 + PB1D10 SINE Alu 55 117 0 4 1216 284 315 14 0 chr4 82809219 82809292 -72820828 + ID4 SINE ID 9 82 -1 4 1216 454 226 88 12 chr4 82809294 82809512 -72820608 + L1MA6 LINE L1 5172 5424 -747 4 1216 770 269 172 25 chr4 82809493 82810016 -72820104 + L1MA6 LINE L1 5534 6139 -161 4 1216 4261 44 4 2 chr4 82810142 82810644 -72819476 - RLTR1C LTR ERV1 0 503 1 4 1216 277 308 218 20 chr4 82810661 82810863 -72819257 + RMER15 LTR ERVL 318 559 -16 4 1216 469 293 0 0 chr4 82810879 82811002 -72819118 + ID_B1 SINE B4 100 222 -2 4 1216 388 224 126 7 chr4 82811017 82811152 -72818968 + L1MA5 LINE L1 6126 6276 -24 4 1216 537 254 24 8 chr4 82811173 82811300 -72818820 - B1F1 SINE Alu -7 142 14 4 1216 313 276 0 26 chr4 82812075 82812153 -72817967 + ID4_ SINE ID 6 81 -2 4 1216 430 258 118 87 chr4 82812169 82812364 -72817756 - LTR16A LTR ERVL -124 327 127 4 1216 975 183 49 39 chr4 82812494 82812699 -72817421 - B3 SINE B2 -9 207 1 4 1216 213 200 0 0 chr4 82813691 82813731 -72816389 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1216 315 49 0 0 chr4 82813731 82813772 -72816348 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1216 263 227 91 26 chr4 82814026 82814103 -72816017 - ID4_ SINE ID 0 83 2 4 1216 435 248 54 81 chr4 82814111 82814260 -72815860 - ID_B1 SINE B4 0 224 80 4 1216 658 271 109 11 chr4 82814783 82815066 -72815054 - Lx7 LINE L1 -1782 5914 5604 4 1216 252 133 0 22 chr4 82815340 82815386 -72814734 - MER112 DNA MER1_type -5 256 212 4 1216 381 93 0 0 chr4 82815402 82815456 -72814664 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1216 241 290 52 31 chr4 82815562 82815658 -72814462 - PB1D10 SINE Alu -10 107 10 4 1216 476 221 130 0 chr4 82815577 82815731 -72814389 - ID_B1 SINE B4 -50 174 1 4 1216 541 262 20 33 chr4 82815807 82815957 -72814163 - B1F SINE Alu -1 148 1 4 1216 266 293 0 58 chr4 82816303 82816390 -72813730 + MLT1J LTR MaLR 238 319 -193 4 1216 424 323 76 72 chr4 82817130 82817420 -72812700 + B4A SINE B4 2 292 0 4 1216 207 214 0 0 chr4 82817468 82817510 -72812610 + A-rich Low_complexity Low_complexity 1 42 0 4 1216 369 0 0 0 chr4 82818797 82818838 -72811282 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1216 1611 111 228 0 chr4 82818865 82819172 -72810948 - ORR1C1 LTR MaLR 0 378 2 4 1216 231 250 64 171 chr4 82821532 82821672 -72808448 - ORR1E LTR MaLR -11 348 224 4 1216 184 309 18 0 chr4 82822463 82822518 -72807602 + L2c LINE L2 3294 3349 -38 4 1216 27 92 0 0 chr4 82823053 82823129 -72806991 + AT_rich Low_complexity Low_complexity 1 76 0 4 1216 1076 249 108 26 chr4 82823458 82823801 -72806319 + MTE2b LTR MaLR 1 371 -8 4 1216 1889 307 47 16 chr4 82824888 82825798 -72804322 + L1M2 LINE L1 2262 3199 -2944 4 1216 289 103 17 33 chr4 82825829 82825889 -72804231 + (CATA)n Simple_repeat Simple_repeat 2 60 0 4 1216 2280 164 62 12 chr4 82826056 82826457 -72803663 - MTC LTR MaLR 0 421 1 4 1216 465 66 0 0 chr4 82826502 82826563 -72803557 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1216 581 275 14 7 chr4 82826564 82826679 -72803441 - B3A SINE B2 -47 151 35 4 1216 306 0 0 0 chr4 82826679 82826713 -72803407 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1216 581 275 14 7 chr4 82826713 82826740 -72803380 - B3A SINE B2 -164 34 8 4 1216 294 29 0 0 chr4 82826769 82826804 -72803316 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 4 1216 1149 117 72 0 chr4 82827140 82827298 -72802822 + B2_Mm1a SINE B2 1 160 -33 4 1216 207 0 0 0 chr4 82827298 82827321 -72802799 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1216 1149 117 72 0 chr4 82827321 82827342 -72802778 + B2_Mm1a SINE B2 161 192 -1 4 1216 225 0 0 0 chr4 82827510 82827535 -72802585 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1216 473 211 182 24 chr4 82827624 82827794 -72802326 + B3A SINE B2 2 198 0 4 1216 2140 197 49 60 chr4 82829871 82830385 -72799735 + RLTR18B LTR ERVK 5 512 0 4 1216 464 261 0 18 chr4 82830413 82830526 -72799594 + B1F SINE Alu 1 111 -38 4 1216 180 268 127 0 chr4 82830863 82830934 -72799186 + MIR SINE MIR 44 123 -85 4 1216 198 0 0 0 chr4 82831407 82831429 -72798691 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1216 1540 187 52 18 chr4 82831442 82831768 -72798352 + MTD LTR MaLR 4 340 -79 4 1216 225 268 89 0 chr4 82833212 82833268 -72796852 - LTR80B LTR ERVL -115 469 409 4 1216 552 342 20 20 chr4 82833293 82833538 -72796582 - LTR80B LTR ERVL -264 320 76 4 1216 653 30 30 10 chr4 82833558 82833659 -72796461 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 1216 444 259 93 26 chr4 82833930 82834081 -72796039 + L1M4b LINE L1 18 178 -7156 4 1216 393 350 68 23 chr4 82834128 82834391 -72795729 + L1M4b LINE L1 270 544 -6790 4 1216 442 359 57 42 chr4 82834553 82834745 -72795375 - ORR1E LTR MaLR -164 195 1 4 1216 216 67 0 0 chr4 82834925 82834955 -72795165 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1216 508 289 28 7 chr4 82835197 82835340 -72794780 + L1M4b LINE L1 683 828 -6506 4 1216 339 333 29 65 chr4 82835693 82835940 -72794180 - BGLII_B LTR ERVK -27 414 178 4 1216 2221 158 34 66 chr4 82835940 82836304 -72793816 + RLTR31_Mm LTR ERVK 1 372 -189 4 1216 2934 53 42 3 chr4 82836304 82836685 -72793435 - MTA_Mm LTR MaLR 0 396 1 4 1216 2221 193 27 117 chr4 82836685 82837006 -72793114 + RLTR31_Mm LTR ERVK 330 584 0 4 1216 637 255 45 41 chr4 82837006 82837227 -72792893 - RLTR11A2 LTR ERVK -305 222 1 4 18 1391 274 108 16 chr4 82837455 82837953 -72792167 + Lx8 LINE L1 6903 7446 -27 4 1217 767 188 21 0 chr4 82837983 82838127 -72791993 + B1_Mur4 SINE Alu 2 148 -2 4 1217 429 20 0 0 chr4 82838141 82838191 -72791929 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1217 1101 105 69 37 chr4 82838427 82838615 -72791505 + B2_Mm2 SINE B2 1 194 -1 4 1217 1726 287 153 24 chr4 82838637 82839790 -72790330 + L1_Mur3 LINE L1 2076 3377 -2503 4 1217 503 270 64 36 chr4 82841122 82841341 -72788779 + L1M4 LINE L1 3452 3676 -2470 4 1217 610 251 36 91 chr4 82841342 82841561 -72788559 + B3 SINE B2 3 209 -7 4 1217 1072 235 4 12 chr4 82841573 82841831 -72788289 + L1_Mur3 LINE L1 3637 3892 -1988 4 1217 207 88 0 0 chr4 82842165 82842199 -72787921 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1217 811 179 21 0 chr4 82842202 82842347 -72787773 - B1_Mus1 SINE Alu 0 148 1 4 1217 1830 150 27 15 chr4 82842369 82842707 -72787413 + ORR1B2 LTR MaLR 26 367 0 5 1217 729 267 42 118 chr4 82843421 82843846 -72786274 + L1M2 LINE L1 4625 5017 -1126 5 1217 225 0 0 0 chr4 82843904 82843929 -72786191 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1217 236 173 0 0 chr4 82843929 82843972 -72786148 + L1M5 LINE L1 5393 5435 -727 5 1217 300 248 47 19 chr4 82844057 82844164 -72785956 + L1M2 LINE L1 5428 5537 -652 5 1217 428 264 64 0 chr4 82844173 82844298 -72785822 - MTEb LTR MaLR -196 183 51 5 1217 189 0 0 0 chr4 82844417 82844438 -72785682 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1217 983 306 53 29 chr4 82844445 82844906 -72785214 - MT2A LTR ERVL -38 546 6 5 1217 251 330 61 18 chr4 82844925 82845039 -72785081 - LTR87 LTR ERVL? -138 486 368 5 1217 576 265 68 21 chr4 82846459 82846694 -72783426 - RMER15 LTR ERVL -15 560 315 5 1217 762 209 7 0 chr4 82847529 82847668 -72782452 + B1_Mur2 SINE Alu 5 144 -5 5 1217 955 172 26 4 chr4 82848120 82848318 -72781802 - ORR1A4 LTR MaLR 0 374 163 5 1217 1910 101 23 10 chr4 82848834 82849134 -72780986 + ORR1A4 LTR MaLR 1 304 -25 5 1217 1670 241 79 24 chr4 82849436 82849460 -72780660 - MT2A LTR ERVL 0 533 510 5 1217 1425 84 118 5 chr4 82849460 82849663 -72780457 - URR1A DNA MER1_type 0 226 1 5 1217 1670 241 79 24 chr4 82849663 82850143 -72779977 - MT2A LTR ERVL -24 509 1 5 1217 937 242 23 19 chr4 82850385 82850600 -72779520 + B3 SINE B2 1 216 0 5 1217 380 295 0 9 chr4 82850640 82850746 -72779374 + PB1D10 SINE Alu 1 105 -12 5 1217 276 30 0 0 chr4 82850816 82850849 -72779271 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1217 500 266 9 0 chr4 82851713 82851826 -72778294 + RSINE1 SINE B4 35 148 -17 5 1217 28 48 0 0 chr4 82851871 82851913 -72778207 + AT_rich Low_complexity Low_complexity 1 42 0 5 1217 468 0 0 0 chr4 82853371 82853423 -72776697 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1217 227 267 0 22 chr4 82854488 82854580 -72775540 + (CGTG)n Simple_repeat Simple_repeat 2 91 0 5 1217 252 0 0 0 chr4 82854696 82854724 -72775396 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 5 1217 565 190 94 7 chr4 82854732 82854870 -72775250 - B4 SINE B4 -63 229 80 5 1217 823 229 120 5 chr4 82854875 82855059 -72775061 - B3 SINE B2 -7 209 5 5 1217 594 60 0 0 chr4 82855076 82855159 -72774961 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1217 238 277 60 0 chr4 82855166 82855249 -72774871 - B4A SINE B4 -192 100 13 5 1217 260 304 10 19 chr4 82856030 82856134 -72773986 + MLT1A1 LTR MaLR 304 406 -2 5 1217 243 241 0 0 chr4 82856150 82856204 -72773916 - L1MB7 LINE L1 -57 6127 6074 5 1217 527 220 55 34 chr4 82856204 82856350 -72773770 + B3 SINE B2 68 216 0 5 1217 1166 50 0 0 chr4 82857137 82857276 -72772844 + B1_Mus1 SINE Alu 1 139 -9 5 1217 1175 102 6 0 chr4 82857298 82857475 -72772645 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1217 270 0 0 0 chr4 82857476 82857506 -72772614 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 5 1217 418 319 9 0 chr4 82859471 82859587 -72770533 - PB1D10 SINE Alu 0 117 1 5 1217 1072 232 143 13 chr4 82859668 82859685 -72770435 + ORR1E LTR MaLR 5 21 -338 5 1217 468 0 0 0 chr4 82859685 82859737 -72770383 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1217 1072 232 143 13 chr4 82859737 82859923 -72770197 + ORR1E LTR MaLR 22 244 -115 5 1217 639 0 0 0 chr4 82859923 82859994 -72770126 + (CCTTG)n Simple_repeat Simple_repeat 3 73 0 5 1217 1072 232 143 13 chr4 82859994 82860103 -72770017 + ORR1E LTR MaLR 245 358 -1 5 1217 2066 150 47 27 chr4 82862377 82862782 -72767338 - MTC LTR MaLR -8 413 1 5 1217 298 279 127 48 chr4 82863743 82863909 -72766211 + RMER5 LTR ERV1 1 179 -355 5 1217 254 79 15 45 chr4 82863916 82863982 -72766138 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 5 1217 1181 55 0 7 chr4 82864060 82864208 -72765912 + B1_Mus1 SINE Alu 2 148 0 5 1217 27 0 0 0 chr4 82864210 82864237 -72765883 + AT_rich Low_complexity Low_complexity 1 27 0 5 1217 1164 231 16 35 chr4 82864237 82864531 -72765589 + RMER5 LTR ERV1 223 514 -20 5 1217 2055 179 57 77 chr4 82864531 82864986 -72765134 - RLTR41 LTR ERV1 0 446 1 5 1217 1164 231 16 35 chr4 82864986 82865009 -72765111 + RMER5 LTR ERV1 515 534 0 5 1217 621 319 88 11 chr4 82865440 82865858 -72764262 + LTR40a LTR ERVL 54 442 -20 5 1217 21 57 0 0 chr4 82867035 82867070 -72763050 + AT_rich Low_complexity Low_complexity 1 35 0 5 1217 210 37 0 0 chr4 82867657 82867684 -72762436 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1217 23 0 0 0 chr4 82867890 82867913 -72762207 + AT_rich Low_complexity Low_complexity 1 23 0 5 1217 240 288 0 12 chr4 82868080 82868161 -72761959 + ID4 SINE ID 1 80 -3 5 1217 779 31 0 10 chr4 82869544 82869643 -72760477 + (GGAAA)n Simple_repeat Simple_repeat 3 100 0 5 1217 663 264 52 0 chr4 82870743 82870917 -72759203 - B3A SINE B2 -15 183 1 5 1217 517 236 19 9 chr4 82871023 82871130 -72758990 - B1_Mur1 SINE Alu -37 112 5 5 1217 24 0 0 0 chr4 82871210 82871234 -72758886 + AT_rich Low_complexity Low_complexity 1 24 0 5 1217 26 30 0 0 chr4 82872718 82872751 -72757369 + AT_rich Low_complexity Low_complexity 1 33 0 5 1217 229 296 12 0 chr4 82873686 82873767 -72756353 + ID4_ SINE ID 1 82 -1 5 1217 323 285 130 8 chr4 82874602 82874733 -72755387 - RSINE1 SINE B4 -4 161 15 5 1217 203 61 30 0 chr4 82875483 82875516 -72754604 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1217 334 257 50 58 chr4 82875544 82875664 -72754456 - PB1D7 SINE Alu -1 119 1 5 1217 1347 73 17 6 chr4 82877008 82877186 -72752934 + B2_Mm2 SINE B2 2 181 -14 5 1217 297 0 0 0 chr4 82878338 82878371 -72751749 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1217 21 0 0 0 chr4 82880321 82880342 -72749778 + AT_rich Low_complexity Low_complexity 1 21 0 5 1217 492 273 15 0 chr4 82880350 82880482 -72749638 + RSINE1 SINE B4 1 134 -31 5 1217 659 226 122 51 chr4 82881956 82882152 -72747968 - B3 SINE B2 -6 210 1 5 1217 513 0 0 0 chr4 82882339 82882396 -72747724 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1217 386 272 0 66 chr4 82882667 82882789 -72747331 + MLT1A0 LTR MaLR 250 363 -2 5 1217 287 227 162 39 chr4 82884760 82884939 -72745181 + L1M5 LINE L1 5572 5777 -347 5 1217 686 232 14 0 chr4 82885478 82885620 -72744500 - B1F SINE Alu -3 146 3 5 1217 408 231 190 58 chr4 82886650 82886908 -72743212 + B4A SINE B4 1 292 0 5 1217 1522 52 21 0 chr4 82887280 82887471 -72742649 + B2_Mm2 SINE B2 1 195 0 5 1217 794 39 10 0 chr4 82887826 82887928 -72742192 + (TCC)n Simple_repeat Simple_repeat 1 103 0 5 1217 245 206 222 0 chr4 82888648 82888711 -72741409 + ID4 SINE ID 6 82 -1 5 1217 830 188 38 47 chr4 82888861 82889073 -72741047 - B3 SINE B2 -4 212 3 5 1217 21 0 0 0 chr4 82889570 82889591 -72740529 + AT_rich Low_complexity Low_complexity 1 21 0 5 1217 1246 27 0 0 chr4 82890246 82890392 -72739728 + B1_Mus2 SINE Alu 2 147 0 5 1217 990 199 37 0 chr4 82890594 82890785 -72739335 + B3 SINE B2 13 210 -6 5 1217 975 242 108 52 chr4 82891266 82891628 -72738492 + MTD LTR MaLR 18 399 -20 5 1217 255 291 0 60 chr4 82891743 82891827 -72738293 + ID4 SINE ID 4 82 -1 5 1217 392 246 82 0 chr4 82892530 82892640 -72737480 - PB1D7 SINE Alu -1 119 1 5 1217 304 270 14 0 chr4 82894128 82894202 -72735918 - ID4_ SINE ID -7 76 2 5 1217 257 274 14 0 chr4 82894302 82894375 -72735745 + ID4 SINE ID 7 80 -3 5 1217 576 257 14 7 chr4 82894575 82894720 -72735400 + B1F SINE Alu 3 148 -1 5 1217 301 337 99 17 chr4 82894936 82895108 -72735012 - B3A SINE B2 -11 187 2 5 1217 326 42 0 20 chr4 82895131 82895180 -72734940 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 5 1217 1194 35 0 0 chr4 82895181 82895322 -72734798 - B1_Mus2 SINE Alu -6 141 1 5 1217 21 57 0 0 chr4 82895411 82895446 -72734674 + AT_rich Low_complexity Low_complexity 1 35 0 5 1217 901 40 87 0 chr4 82895495 82895621 -72734499 + L1_Mus2 LINE L1 6430 6566 0 5 1217 325 324 5 55 chr4 82895649 82895848 -72734272 - B3A SINE B2 -9 189 1 5 1217 198 0 0 0 chr4 82895907 82895929 -72734191 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 5 1217 697 154 0 0 chr4 82895930 82896034 -72734086 - B1_Mus2 SINE Alu -7 140 37 5 1217 22 70 0 0 chr4 82896034 82896077 -72734043 + AT_rich Low_complexity Low_complexity 1 43 0 5 1217 249 159 0 0 chr4 82896225 82896269 -72733851 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1217 328 274 124 15 chr4 82897090 82897227 -72732893 + L1MEf LINE L1 598 749 -5451 5 1217 325 302 76 30 chr4 82897385 82897689 -72732431 + L1MEf LINE L1 1267 1584 -4616 5 1217 1300 234 77 11 chr4 82897849 82898212 -72731908 + MTD LTR MaLR 19 405 -14 5 1217 315 314 28 7 chr4 82898237 82898378 -72731742 + L1MEf LINE L1 1801 1944 -4256 5 1217 1250 21 7 0 chr4 82898407 82898552 -72731568 - B1_Mus1 SINE Alu -1 147 2 5 1217 371 272 11 11 chr4 82898571 82898664 -72731456 + PB1D10 SINE Alu 1 93 -24 5 1217 23 33 0 0 chr4 82898679 82898709 -72731411 + AT_rich Low_complexity Low_complexity 1 30 0 5 1217 328 282 12 0 chr4 82898757 82898842 -72731278 + PB1D10 SINE Alu 26 111 -6 5 1217 333 0 0 0 chr4 82899031 82899068 -72731052 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1217 369 0 0 0 chr4 82899068 82899108 -72731012 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1217 1067 127 71 6 chr4 82899521 82899703 -72730417 - B2_Mm2 SINE B2 -1 194 1 5 1217 207 0 0 0 chr4 82899758 82899781 -72730339 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1217 68 55 0 0 chr4 82900196 82900306 -72729814 + AT_rich Low_complexity Low_complexity 1 110 0 5 1217 216 0 0 0 chr4 82901456 82901480 -72728640 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1217 430 189 22 1 chr4 82901688 82901780 -72728340 + PB1D9 SINE Alu 25 124 -3 6 1217 509 145 160 17 chr4 82902280 82902399 -72727721 - B1F SINE Alu -3 146 11 6 1217 249 296 33 22 chr4 82902319 82902409 -72727711 - MT2B2 LTR ERVL -332 252 162 6 1217 238 232 118 44 chr4 82902686 82902821 -72727299 + MIRb SINE MIR 115 259 -9 6 1217 572 215 217 77 chr4 82903263 82903586 -72726534 + RLTR9A LTR ERVK 1 368 0 6 1217 453 258 31 15 chr4 82904241 82904371 -72725749 + MTD LTR MaLR 1 132 -287 6 1217 270 240 244 3 chr4 82904377 82904500 -72725620 + MTD LTR MaLR 276 421 0 6 1217 694 172 23 0 chr4 82905976 82906104 -72724016 + B1_Mur1 SINE Alu 19 149 0 6 1217 333 0 0 0 chr4 82906287 82906324 -72723796 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1217 189 0 0 0 chr4 82906324 82906344 -72723776 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1217 405 252 100 8 chr4 82908212 82908332 -72721788 + ID_B1 SINE B4 87 217 -7 6 1217 213 94 0 0 chr4 82908369 82908401 -72721719 + (CGAGG)n Simple_repeat Simple_repeat 2 33 0 6 1217 23 0 0 0 chr4 82908902 82908925 -72721195 + AT_rich Low_complexity Low_complexity 1 23 0 6 1217 369 208 12 24 chr4 82910066 82910164 -72719956 - PB1D7 SINE Alu -7 113 17 6 1217 239 354 25 17 chr4 82910266 82910384 -72719736 - LTR48 LTR ERV1 -538 249 131 6 1217 289 273 0 54 chr4 82910373 82910466 -72719654 + LTR48B LTR ERV1 12 99 -545 6 1217 253 270 26 26 chr4 82910631 82910707 -72719413 + MIRb SINE MIR 112 187 -81 6 1217 689 155 9 0 chr4 82911027 82911143 -72718977 + B1_Mur1 SINE Alu 4 120 -29 6 1217 567 0 0 0 chr4 82911150 82911213 -72718907 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 6 1217 489 217 25 16 chr4 82911463 82911585 -72718535 + B1F2 SINE Alu 6 128 -21 6 1217 444 135 0 0 chr4 82911587 82911661 -72718459 + (GGA)n Simple_repeat Simple_repeat 3 76 0 6 1217 505 274 14 0 chr4 82912162 82912308 -72717812 + B1F1 SINE Alu 1 148 -1 6 1217 881 266 15 23 chr4 82912308 82912573 -72717547 + B4 SINE B4 3 265 -27 6 1217 256 250 43 43 chr4 82912711 82912828 -72717292 - L1MB2 LINE L1 -25 6146 6030 6 1217 1124 48 0 52 chr4 82912852 82913007 -72717113 - B1_Mus1 SINE Alu 0 148 2 6 1217 305 298 98 69 chr4 82915677 82915913 -72714207 + B4 SINE B4 58 291 -1 6 1217 942 33 0 0 chr4 82916256 82916377 -72713743 + B1_Mus2 SINE Alu 27 147 0 6 1217 225 318 106 0 chr4 82916484 82916569 -72713551 + ID_B1 SINE B4 105 198 -26 6 1217 475 236 65 71 chr4 82916610 82916726 -72713394 + RSINE1 SINE B4 12 124 -41 6 1217 426 85 0 0 chr4 82916726 82916785 -72713335 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1217 475 236 65 71 chr4 82916785 82916823 -72713297 + RSINE1 SINE B4 125 164 -1 6 1217 992 114 6 29 chr4 82917357 82917529 -72712591 - URR1A DNA MER1_type 0 226 59 6 1217 353 268 78 54 chr4 82917529 82917556 -72712564 + CYRA11_Mm Unknown Y-chromosome 197 375 -242 6 1217 444 244 53 38 chr4 82917645 82917777 -72712343 - B1F2 SINE Alu -13 136 3 6 1217 225 0 0 0 chr4 82917802 82917827 -72712293 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1217 364 243 0 0 chr4 82917845 82917915 -72712205 - B1F SINE Alu -79 70 1 6 1217 741 259 45 20 chr4 82918045 82918246 -72711874 - B3 SINE B2 -10 206 1 6 1217 315 246 43 60 chr4 82918266 82918383 -72711737 - PB1D10 SINE Alu -1 116 2 6 1217 2789 206 118 62 chr4 82918828 82919735 -72710385 + RMER17B LTR ERVK 1 958 0 6 1217 632 222 129 67 chr4 82920319 82920512 -72709608 + B3 SINE B2 1 205 -11 6 1217 491 321 137 18 chr4 82921866 82922208 -72707912 - L1MB8 LINE L1 -278 5900 5518 6 1217 327 254 100 0 chr4 82922295 82922425 -72707695 + B1F1 SINE Alu 1 143 -6 6 1217 562 265 19 38 chr4 82922429 82922586 -72707534 + RSINE1 SINE B4 12 165 0 6 1217 663 250 33 0 chr4 82922616 82922768 -72707352 + B3A SINE B2 1 157 -41 6 1217 1136 224 56 122 chr4 82922770 82923288 -72706832 + RLTR12B LTR ERVK 2 485 -43 6 1217 311 284 84 0 chr4 82924451 82924546 -72705574 - PB1 SINE Alu -2 125 23 6 1217 246 238 0 114 chr4 82924634 82924705 -72705415 + RSINE1 SINE B4 65 128 -37 6 1217 333 0 0 0 chr4 82924705 82924742 -72705378 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1217 246 238 0 114 chr4 82924742 82924784 -72705336 + RSINE1 SINE B4 129 164 -1 6 1217 533 239 27 27 chr4 82925380 82925492 -72704628 - PB1D10 SINE Alu -5 112 1 6 1217 538 145 24 16 chr4 82927249 82927375 -72702745 + GA-rich Low_complexity Low_complexity 1 127 0 6 1217 501 62 0 0 chr4 82927364 82927429 -72702691 + (GAAAA)n Simple_repeat Simple_repeat 1 65 0 6 1217 261 264 0 42 chr4 82928810 82928847 -72701273 + polypurine Low_complexity Low_complexity 2 36 0 6 1217 1126 75 7 0 chr4 82928847 82928993 -72701127 + B1_Mus2 SINE Alu 1 147 0 6 1217 261 264 0 42 chr4 82928993 82929050 -72701070 + polypurine Low_complexity Low_complexity 37 91 0 6 1217 270 0 0 0 chr4 82929543 82929573 -72700547 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 6 1217 183 80 0 0 chr4 82929706 82929731 -72700389 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1217 561 125 0 35 chr4 82931591 82931707 -72698413 - L1Md_F2 LINE L1 0 6582 6471 6 1217 934 47 0 0 chr4 82931707 82931814 -72698306 - U6 snRNA snRNA 0 107 1 6 1217 327 266 34 34 chr4 82931824 82931941 -72698179 - PB1D10 SINE Alu 0 117 1 6 1217 559 265 37 0 chr4 82932127 82932263 -72697857 + ID_B1 SINE B4 84 224 0 6 1217 302 265 98 41 chr4 82932483 82932605 -72697515 - RMER15 LTR ERVL -15 560 432 6 1217 417 326 42 7 chr4 82932952 82933094 -72697026 - RSINE1 SINE B4 -16 149 3 6 1217 22 56 0 0 chr4 82933467 82933503 -72696617 + AT_rich Low_complexity Low_complexity 1 36 0 6 1217 216 122 49 0 chr4 82933737 82933778 -72696342 + G-rich Low_complexity Low_complexity 5 47 0 6 1217 254 235 0 117 chr4 82933795 82933832 -72696288 - ID4 SINE ID -13 70 42 6 1217 3311 43 5 0 chr4 82933832 82934226 -72695894 + MTA_Mm LTR MaLR 1 396 0 6 1217 254 235 0 117 chr4 82934226 82934265 -72695855 - ID4 SINE ID -42 41 3 6 1217 376 259 118 103 chr4 82934543 82934794 -72695326 + ORR1D2 LTR MaLR 112 357 -13 6 1217 2363 142 6 75 chr4 82934809 82935279 -72694841 + RLTR31A_Mm LTR ERVK 1 438 -146 6 1217 1074 98 0 0 chr4 82935456 82935734 -72694386 + (GGA)n Simple_repeat Simple_repeat 1 278 0 6 1217 786 81 0 0 chr4 82935781 82935905 -72694215 + (GGA)n Simple_repeat Simple_repeat 3 126 0 6 1217 1076 44 0 42 chr4 82936152 82936295 -72693825 + B1_Mus2 SINE Alu 1 137 -10 6 1217 586 239 158 6 chr4 82938040 82938217 -72691903 - B3 SINE B2 -4 212 9 6 1217 420 211 43 26 chr4 82938284 82938401 -72691719 + MLT1A1 LTR MaLR 11 129 -279 6 1217 1769 148 65 18 chr4 82938411 82938749 -72691371 - ORR1B1 LTR MaLR 0 394 41 6 1217 4276 52 0 2 chr4 82939052 82939574 -72690546 + L1Md_F2 LINE L1 6062 6582 0 6 1217 183 42 0 0 chr4 82939579 82939603 -72690517 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1217 739 259 94 5 chr4 82940233 82940435 -72689685 - ID_B1 SINE B4 0 224 5 6 1217 252 171 0 0 chr4 82940777 82940818 -72689302 + B1_Mur1 SINE Alu 102 142 -7 6 1217 396 0 0 0 chr4 82940818 82940862 -72689258 + (ATTAG)n Simple_repeat Simple_repeat 5 48 0 6 1217 298 331 12 18 chr4 82940873 82941036 -72689084 + L1MC3 LINE L1 7494 7655 -130 6 1217 378 245 39 0 chr4 82941716 82941818 -72688302 + PB1D10 SINE Alu 10 115 -2 6 1217 2452 144 39 10 chr4 82941900 82942307 -72687813 + MTC LTR MaLR 3 421 0 6 1217 486 274 56 52 chr4 82942489 82942736 -72687384 + MLT1B LTR MaLR 111 390 0 6 1217 699 209 0 0 chr4 82942907 82943036 -72687084 + B3 SINE B2 4 132 -84 6 1217 739 186 27 27 chr4 82943062 82943211 -72686909 - B1_Mur4 SINE Alu -1 149 1 6 1217 806 147 34 34 chr4 82943655 82943803 -72686317 - B1_Mus1 SINE Alu 0 148 1 6 1217 2023 115 0 108 chr4 82944251 82944602 -72685518 - MTC LTR MaLR 0 421 109 6 1217 1322 92 49 0 chr4 82944603 82944788 -72685332 + B2_Mm2 SINE B2 2 195 0 6 1217 194 150 25 0 chr4 82944819 82944859 -72685261 + CT-rich Low_complexity Low_complexity 4 44 0 6 1217 232 254 227 22 chr4 82945056 82945241 -72684879 + L2a LINE L2 2954 3176 -250 6 1217 1598 52 0 0 chr4 82945399 82945592 -72684528 + B2_Mm1a SINE B2 1 193 0 6 1217 338 291 8 52 chr4 82945698 82945832 -72684288 + RSINE1 SINE B4 34 161 -4 6 1217 747 224 74 32 chr4 82946149 82946338 -72683782 + B3A SINE B2 1 197 -1 6 1217 265 258 0 61 chr4 82946814 82946880 -72683240 + B1_Mur1 SINE Alu 88 149 0 6 1217 881 0 0 0 chr4 82947028 82947138 -72682982 + L1Md_T LINE L1 6473 6582 0 6 1217 240 59 0 0 chr4 82947141 82947175 -72682945 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1217 300 359 0 0 chr4 82947357 82947435 -72682685 + ID_B1 SINE B4 79 156 -68 6 1217 419 269 48 0 chr4 82947368 82947472 -72682648 + PB1D10 SINE Alu 9 117 0 6 1217 370 179 127 13 chr4 82947661 82947740 -72682380 - B1_Mm SINE Alu -1 146 59 6 1217 301 297 100 17 chr4 82947767 82947887 -72682233 - B1F SINE Alu -1 148 19 6 1217 774 159 30 0 chr4 82948039 82948171 -72681949 + B1_Mur3 SINE Alu 4 139 -10 6 1217 34 0 0 0 chr4 82949309 82949343 -72680777 + AT_rich Low_complexity Low_complexity 1 34 0 6 1217 1681 31 0 0 chr4 82950009 82950201 -72679919 - B2_Mm1a SINE B2 0 193 2 6 1217 586 124 218 24 chr4 82950204 82950328 -72679792 - B1_Mus1 SINE Alu 0 148 1 7 1217 1357 91 0 21 chr4 82950601 82950791 -72679329 + B2_Mm2 SINE B2 3 188 -7 7 1217 565 221 133 8 chr4 82950825 82950953 -72679167 + RSINE1 SINE B4 14 157 -8 7 1217 251 305 113 97 chr4 82950953 82951006 -72679114 + B3A SINE B2 13 196 -2 7 1217 654 234 206 18 chr4 82951123 82951341 -72678779 + RMER1C Other Other 1067 1325 -17 7 1217 185 100 0 48 chr4 82951789 82951831 -72678289 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1217 258 302 0 10 chr4 82952344 82952441 -72677679 - L1MC4 LINE L1 -975 7067 6972 7 1217 548 269 29 29 chr4 82952713 82952851 -72677269 + RSINE1 SINE B4 3 140 -25 7 1217 225 315 15 45 chr4 82953107 82953240 -72676880 - L1MC4 LINE L1 -944 7098 6970 7 1217 1691 51 181 38 chr4 82953323 82953599 -72676521 + L1_Mus2 LINE L1 6261 6580 -2 7 1217 186 43 0 0 chr4 82953904 82953927 -72676193 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1217 2662 138 19 10 chr4 82954585 82955002 -72675118 - MTC LTR MaLR 0 421 1 7 1217 1186 231 34 82 chr4 82955736 82955846 -72674274 - RCHARR1 DNA MER1_type -3 971 857 7 1217 967 68 104 8 chr4 82955846 82955980 -72674140 + B1_Mm SINE Alu 1 147 0 7 1217 1186 231 34 82 chr4 82955980 82956073 -72674047 - RCHARR1 DNA MER1_type -118 856 790 7 1217 866 169 126 0 chr4 82956073 82956256 -72673864 + B3 SINE B2 1 206 -10 7 1217 1186 231 34 82 chr4 82956256 82956404 -72673716 - RCHARR1 DNA MER1_type -185 789 636 7 1217 819 172 75 29 chr4 82956395 82956569 -72673551 + B2_Mm2 SINE B2 14 195 0 7 1217 411 240 79 8 chr4 82956575 82956701 -72673419 - RCHARR1 DNA MER1_type -459 515 381 7 1217 1095 223 217 25 chr4 82956938 82957265 -72672855 - MTD LTR MaLR -26 393 4 7 1217 526 176 29 0 chr4 82957711 82957813 -72672307 - ID_B1 SINE B4 -21 203 99 7 1217 236 311 56 0 chr4 82957870 82957960 -72672160 + MTEa LTR MaLR 1 95 -264 7 1217 360 128 24 71 chr4 82958188 82958272 -72671848 + MTEa LTR MaLR 290 369 -10 7 1217 231 359 7 86 chr4 82958641 82958781 -72671339 + MER5A DNA MER1_type 61 189 0 7 1217 200 354 41 10 chr4 82958806 82958903 -72671217 - L2 LINE L2 -538 2881 2782 7 1217 273 322 20 61 chr4 82959035 82959102 -72671018 + MLT1A1 LTR MaLR 44 107 -258 7 1217 1196 137 341 11 chr4 82959102 82959389 -72670731 + ORR1C2 LTR MaLR 3 384 0 7 1217 273 322 20 61 chr4 82959389 82959420 -72670700 + MLT1A1 LTR MaLR 108 138 -227 7 1217 347 250 0 48 chr4 82959483 82959567 -72670553 + ID SINE ID 5 84 -140 7 1217 1443 52 0 131 chr4 82959578 82959800 -72670320 + B2_Mm1t SINE B2 1 193 0 7 1217 289 269 181 29 chr4 82959850 82959988 -72670132 + MLT1A1 LTR MaLR 214 372 -36 7 1217 279 252 207 41 chr4 82960484 82960629 -72669491 - MIRb SINE MIR -84 184 16 7 1217 484 276 47 82 chr4 82960799 82960969 -72669151 - MER58A DNA MER1_type -60 164 1 7 1217 373 267 0 62 chr4 82961070 82961182 -72668938 - PB1 SINE Alu -14 113 9 7 1217 331 237 82 152 chr4 82962010 82962194 -72667926 + B4 SINE B4 53 223 -69 7 1217 779 146 35 55 chr4 82962052 82962197 -72667923 + B1_Mus2 SINE Alu 6 147 0 7 1217 357 24 0 0 chr4 82963120 82963162 -72666958 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1217 526 133 310 0 chr4 82964388 82964501 -72665619 + B1_Mur4 SINE Alu 2 149 -1 7 1217 249 33 0 0 chr4 82964501 82964531 -72665589 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 7 1217 395 105 0 0 chr4 82964531 82964588 -72665532 - B2_Mm2 SINE B2 -136 59 3 7 1217 560 220 0 39 chr4 82964589 82964693 -72665427 + B1_Mur2 SINE Alu 50 149 0 7 1217 666 0 0 0 chr4 82964727 82964801 -72665319 + (GGGAA)n Simple_repeat Simple_repeat 3 76 0 7 1217 268 225 33 111 chr4 82965053 82965143 -72664977 + MER66C LTR ERV1 431 513 -42 7 1217 1179 94 46 17 chr4 82965232 82965406 -72664714 - B2_Mm2 SINE B2 -14 181 3 7 1217 506 232 47 23 chr4 82965852 82965980 -72664140 + B1F2 SINE Alu 16 146 -3 7 1217 312 264 233 44 chr4 82966028 82966367 -72663753 - MER106B DNA MER1_type 0 1059 657 7 1217 3356 30 5 8 chr4 82966377 82966774 -72663346 + MTA_Mm LTR MaLR 1 396 0 7 1217 915 144 187 32 chr4 82966825 82967012 -72663108 - B3 SINE B2 0 216 1 7 1217 1156 63 0 0 chr4 82967030 82967172 -72662948 + B1_Mus1 SINE Alu 1 142 -6 7 1217 432 0 0 0 chr4 82967174 82967222 -72662898 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 7 1217 187 54 26 26 chr4 82967822 82967860 -72662260 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1217 752 136 21 77 chr4 82967899 82968042 -72662078 - B1_Mur4 SINE Alu -13 137 3 7 1217 205 211 94 19 chr4 82968414 82968467 -72661653 - L2b LINE L2 0 3375 3319 7 1218 387 234 6 48 chr4 82968693 82968786 -72661334 - PB1D10 SINE Alu -35 114 21 7 1218 276 226 81 0 chr4 82970742 82970804 -72659316 + L2a LINE L2 3316 3382 -44 7 1218 219 286 38 25 chr4 82971249 82971328 -72658792 - MIR SINE MIR -150 112 33 7 1218 1161 141 36 5 chr4 82972297 82972489 -72657631 + URR1B DNA MER1_type 28 225 0 7 1218 644 256 56 42 chr4 82972892 82973108 -72657012 + ID_B1 SINE B4 3 221 -3 7 1218 288 135 27 13 chr4 82973160 82973235 -72656885 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 1218 330 26 0 0 chr4 82973269 82973308 -72656812 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1218 252 59 0 0 chr4 82973313 82973347 -72656773 - B3A SINE B2 -163 35 2 7 1218 914 266 62 59 chr4 82974636 82974908 -72655212 + B4 SINE B4 6 278 -14 7 1218 228 235 0 0 chr4 82974925 82974941 -72655179 + MT2B2 LTR ERVL 242 257 -327 7 1218 264 161 0 151 chr4 82974941 82975014 -72655106 + B1F2 SINE Alu 1 62 -87 7 1218 1872 152 63 93 chr4 82975094 82975183 -72654937 - RMER10A LTR ERVL 0 442 369 7 1218 713 65 0 0 chr4 82975183 82975275 -72654845 + 4.5SRNA scRNA scRNA 1 92 -2 7 1218 1143 58 0 7 chr4 82975277 82975416 -72654704 + B1_Mm SINE Alu 1 138 -9 7 1218 397 17 67 0 chr4 82975416 82975476 -72654644 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 7 1218 1872 152 63 93 chr4 82975476 82975811 -72654309 - RMER10A LTR ERVL -74 368 28 7 1218 686 291 70 0 chr4 82976092 82976291 -72653829 + ID_B1 SINE B4 1 213 -11 7 1218 272 226 0 0 chr4 82976328 82976390 -72653730 + ID_B1 SINE B4 91 152 -72 7 1218 192 77 0 0 chr4 82976424 82976450 -72653670 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1218 1504 136 170 90 chr4 82976458 82976823 -72653297 + RMER10B LTR ERVL 5 398 0 7 1218 871 70 131 15 chr4 82976891 82977011 -72653109 + B1_Mus2 SINE Alu 2 138 -9 7 1218 894 106 0 0 chr4 82977011 82977143 -72652977 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 7 1218 1689 174 33 21 chr4 82977155 82977484 -72652636 + RLTR11A LTR ERVK 144 476 -52 7 1218 343 118 0 56 chr4 82977843 82977933 -72652187 + CT-rich Low_complexity Low_complexity 2 86 0 7 1218 946 188 64 10 chr4 82977942 82978146 -72651974 - B3 SINE B2 0 216 2 7 1218 336 307 69 0 chr4 82978150 82978251 -72651869 - PB1D10 SINE Alu 0 117 10 7 1218 1200 68 0 0 chr4 82978415 82978561 -72651559 + B1_Mus2 SINE Alu 2 147 0 7 1218 341 312 31 31 chr4 82979373 82979532 -72650588 + MLT1A1 LTR MaLR 1 159 -249 7 1218 233 283 0 0 chr4 82979559 82979612 -72650508 + MLT1A1 LTR MaLR 278 330 -78 7 1218 281 270 171 0 chr4 82979639 82979750 -72650370 - B1F SINE Alu -11 138 9 7 1218 242 309 15 0 chr4 82979749 82979817 -72650303 + MLT1A0 LTR MaLR 272 340 -25 7 1218 686 203 41 20 chr4 82979908 82980054 -72650066 - B1_Mur3 SINE Alu 0 149 1 7 1218 457 272 114 59 chr4 82980306 82980588 -72649532 + MLT1A LTR MaLR 68 399 -9 7 1218 630 298 124 9 chr4 82980677 82980894 -72649226 + B4A SINE B4 51 292 0 7 1218 1271 123 21 0 chr4 82980997 82981184 -72648936 + B2_Mm2 SINE B2 1 191 -4 7 1218 672 83 0 0 chr4 82981185 82981281 -72648839 + (GAAA)n Simple_repeat Simple_repeat 4 99 0 7 1218 314 322 52 43 chr4 82981408 82981609 -72648511 - MER31-int LTR ERV1 -691 4245 4042 7 1218 1093 90 0 0 chr4 82981609 82981753 -72648367 + B1_Mus1 SINE Alu 5 148 0 7 1218 668 278 114 40 chr4 82981786 82982289 -72647831 - MER50-int LTR ERV1 -1531 5674 5320 7 1218 1353 212 50 118 chr4 82982330 82982400 -72647720 + ORR1C2 LTR MaLR 11 75 -309 7 1218 1105 88 0 0 chr4 82982400 82982547 -72647573 + B1_Mus1 SINE Alu 2 148 0 7 1218 1353 212 50 118 chr4 82982547 82982876 -72647244 + ORR1C2 LTR MaLR 76 383 -1 7 1218 452 293 96 58 chr4 82982983 82983333 -72646787 - MER57A-int LTR ERV1 -2897 3290 2966 7 1218 379 330 19 0 chr4 82983343 82983449 -72646671 + RSINE1 SINE B4 2 109 -56 7 1218 810 145 0 0 chr4 82983623 82983747 -72646373 + B2_Mm2 SINE B2 2 125 -70 7 1218 287 331 21 58 chr4 82983757 82983787 -72646333 - B3A SINE B2 -16 182 1 7 1218 546 261 50 13 chr4 82983787 82983946 -72646174 - B4A SINE B4 -127 165 1 7 1218 524 264 39 0 chr4 82984160 82984289 -72645831 + B1F SINE Alu 16 149 0 7 1218 645 167 9 0 chr4 82984291 82984399 -72645721 + B1_Mus1 SINE Alu 1 109 -39 7 1218 222 37 0 0 chr4 82984712 82984739 -72645381 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1218 523 200 51 88 chr4 82984767 82984904 -72645216 - RSINE1 SINE B4 -32 133 2 7 1218 670 301 71 8 chr4 82985352 82985620 -72644500 + L1MB4 LINE L1 4036 4320 -1826 7 1218 459 0 0 0 chr4 82985637 82985688 -72644432 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1218 306 0 0 0 chr4 82985688 82985721 -72644399 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1218 1207 276 101 50 chr4 82985745 82986181 -72643939 + L1MB4 LINE L1 5311 5785 -395 7 1218 1332 83 11 6 chr4 82986181 82986363 -72643757 + B2_Mm2 SINE B2 2 184 -11 7 1218 1207 279 106 48 chr4 82986363 82986680 -72643440 + L1MB4 LINE L1 5786 6124 -50 7 1218 869 120 0 0 chr4 82986685 82986810 -72643310 - B1_Mus1 SINE Alu -17 131 7 7 1218 489 241 18 27 chr4 82986831 82986942 -72643178 - ID_B1 SINE B4 -34 190 81 8 1218 1640 31 5 0 chr4 82987013 82987205 -72642915 - B2_Mm1t SINE B2 0 193 1 8 1218 236 94 0 0 chr4 82987327 82987359 -72642761 - B1_Mus1 SINE Alu -116 32 1 7 1218 631 204 0 125 chr4 82987388 82987556 -72642564 - B1_Mus1 SINE Alu -1 147 1 8 1218 180 316 18 0 chr4 82987743 82987800 -72642320 - L2a LINE L2 -80 3346 3289 8 1218 460 222 74 0 chr4 82987803 82987911 -72642209 + PB1D10 SINE Alu 2 117 0 8 1218 182 37 37 0 chr4 82988246 82988273 -72641847 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 8 1218 318 264 21 84 chr4 82988722 82988817 -72641303 + PB1D9 SINE Alu 16 104 -16 8 1218 569 337 105 93 chr4 82988874 82989086 -72641034 - MER34A1 LTR ERV1 -20 567 357 8 1218 355 269 0 0 chr4 82989086 82989164 -72640956 - ID4 SINE ID -5 78 1 8 1218 569 337 105 93 chr4 82989164 82989179 -72640941 - MER34A1 LTR ERV1 -231 356 349 8 1218 358 246 42 50 chr4 82989179 82989299 -72640821 - PB1D9 SINE Alu 0 120 2 8 1218 569 337 105 93 chr4 82989299 82989630 -72640490 - MER34A1 LTR ERV1 -239 348 1 8 1218 1174 132 21 5 chr4 82989729 82989920 -72640200 - B2_Mm2 SINE B2 0 195 2 8 1218 477 247 212 18 chr4 82989952 82990117 -72640003 + B3A SINE B2 1 197 -1 8 1218 441 0 0 0 chr4 82990866 82990915 -72639205 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1218 324 0 0 0 chr4 82990915 82990950 -72639170 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1218 332 326 116 63 chr4 82991200 82991390 -72638730 - MLT1J LTR MaLR -236 276 77 8 1218 21 36 0 0 chr4 82991563 82991591 -72638529 + AT_rich Low_complexity Low_complexity 1 28 0 8 1218 550 309 7 0 chr4 82991623 82991762 -72638358 - Lx8 LINE L1 -1129 6344 6205 8 1218 352 339 0 59 chr4 82992078 82992197 -72637923 + ID_B1 SINE B4 65 176 -48 8 1218 535 204 9 19 chr4 82992115 82992220 -72637900 + PB1D10 SINE Alu 14 117 0 8 1218 1207 258 38 85 chr4 82992339 82992546 -72637574 - MTE2a LTR MaLR 0 379 191 8 1218 1085 73 0 7 chr4 82992546 82992684 -72637436 - B1_Mus1 SINE Alu -10 138 2 8 1218 1207 258 38 85 chr4 82992684 82992874 -72637246 - MTE2a LTR MaLR -189 190 1 8 1218 276 307 97 13 chr4 82992976 82993131 -72636989 + MLT1F1 LTR MaLR 2 169 -343 8 1218 1414 77 0 11 chr4 82993477 82993662 -72636458 - B2_Mm2 SINE B2 -10 185 3 8 1218 1100 96 7 0 chr4 82993693 82993839 -72636281 - B1_Mus1 SINE Alu 0 148 2 8 1218 1163 44 0 0 chr4 82993873 82994010 -72636110 - B1_Mus1 SINE Alu -10 138 2 8 1218 180 77 0 0 chr4 82994131 82994157 -72635963 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 8 1218 531 275 75 55 chr4 82994158 82994304 -72635816 - B1_Mur2 SINE Alu 0 149 1 8 1218 21 0 0 0 chr4 82994310 82994331 -72635789 + AT_rich Low_complexity Low_complexity 1 21 0 8 1218 563 261 31 11 chr4 82994397 82994536 -72635584 + B1F1 SINE Alu 12 144 -5 8 1218 242 255 0 0 chr4 82994571 82994618 -72635502 + polypurine Low_complexity Low_complexity 3 49 0 8 1218 318 303 55 87 chr4 82994734 82995009 -72635111 + L1MA8 LINE L1 5417 5682 -609 8 1218 281 221 167 37 chr4 82995054 82995162 -72634958 + L1MA8 LINE L1 5791 5912 -400 8 1218 5408 105 23 0 chr4 82995182 82995960 -72634160 + RMER12 LTR ERVK 1 796 -526 8 1218 396 236 34 107 chr4 82996017 82996239 -72633881 + RMER12 LTR ERVK 1127 1322 0 8 1218 463 199 133 98 chr4 82996248 82996504 -72633616 + L1MA8 LINE L1 5947 6211 -80 8 1218 581 271 105 32 chr4 82996716 82996964 -72633156 + MLT1F1 LTR MaLR 184 449 -120 8 1218 262 254 27 27 chr4 82997238 82997311 -72632809 - ID4 SINE ID -9 74 2 8 1218 694 264 17 22 chr4 82997526 82997704 -72632416 - B3A SINE B2 -18 180 4 8 1218 754 232 6 24 chr4 82997905 82998073 -72632047 + RSINE1 SINE B4 1 165 0 8 1218 514 318 129 18 chr4 82998130 82998398 -72631722 - Arthur1C DNA Tip100 -38 325 28 8 1218 268 208 64 13 chr4 82998398 82998476 -72631644 - MTEa LTR MaLR -3 376 295 8 1218 3791 103 71 7 chr4 82998511 82999076 -72631044 + MT2B LTR ERVL 1 601 0 8 1218 932 124 7 52 chr4 82999400 82999553 -72630567 + B1_Mus1 SINE Alu 3 148 0 8 1218 1187 37 0 0 chr4 82999558 82999694 -72630426 + B1_Mm SINE Alu 2 137 -10 8 1218 234 0 0 0 chr4 82999694 82999720 -72630400 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1218 586 204 102 0 chr4 83000037 83000194 -72629926 + MER57C2 LTR ERV1 249 421 -13 1 1218 235 291 38 12 chr4 83000203 83000283 -72629837 - ID4_ SINE ID 0 83 2 2 1218 1352 113 0 5 chr4 83000496 83000691 -72629429 + B2_Mm2 SINE B2 2 195 0 3 1218 747 212 0 14 chr4 83001065 83001213 -72628907 - B1_Mur1 SINE Alu 0 149 4 4 1218 346 276 68 8 chr4 83001621 83001738 -72628382 + PB1 SINE Alu 2 125 -2 5 1218 472 274 60 0 chr4 83001765 83001882 -72628238 + RSINE1 SINE B4 3 126 -39 6 1218 252 86 0 0 chr4 83001903 83001938 -72628182 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 7 1218 2075 135 28 31 chr4 83002248 83002562 -72627558 + ORR1B2 LTR MaLR 1 319 -48 8 1218 1281 106 37 11 chr4 83002562 83002752 -72627368 + B2_Mm2 SINE B2 1 195 0 9 1218 2075 135 28 31 chr4 83002752 83002797 -72627323 + ORR1B2 LTR MaLR 320 359 -8 8 1218 645 184 21 29 chr4 83002947 83003087 -72627033 + RMER6C LTR ERVK 12 150 -540 1 1218 3849 137 84 62 chr4 83003201 83003462 -72626658 - RLTR21 LTR ERVK -50 1522 1299 1 1218 309 26 0 0 chr4 83003462 83003500 -72626620 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1218 3849 137 84 62 chr4 83003500 83004080 -72626040 - RLTR21 LTR ERVK -274 1298 662 1 1218 2016 90 12 69 chr4 83004080 83004413 -72625707 - RMER2 LTR ERV1 0 567 254 1 1218 3186 134 41 4 chr4 83004408 83004919 -72625201 - RLTR21 LTR ERVK -1040 532 3 1 1218 1986 135 58 52 chr4 83004925 83005161 -72624959 + RMER6C LTR ERVK 186 418 -272 1 1218 3190 139 14 2 chr4 83005161 83005652 -72624468 - RLTR19 LTR ERVK -2 497 1 1 1218 1986 135 58 52 chr4 83005652 83005860 -72624260 + RMER6C LTR ERVK 419 633 -57 1 1218 356 286 48 114 chr4 83006020 83006186 -72623934 + MTE2b LTR MaLR 102 256 -123 1 1218 395 35 17 0 chr4 83006229 83006287 -72623833 + RMER6C LTR ERVK 465 523 -167 1 1218 1169 213 27 33 chr4 83006307 83006630 -72623490 - RMER19C LTR ERVK -449 288 1 1 1218 387 0 0 0 chr4 83006713 83006756 -72623364 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1218 984 307 93 90 chr4 83007841 83008461 -72621659 - Lx8 LINE L1 -145 7328 6707 1 1218 400 291 58 33 chr4 83008475 83008596 -72621524 - Lx8 LINE L1 -698 6775 6652 2 1218 1358 81 5 21 chr4 83008610 83008799 -72621321 + B2_Mm1a SINE B2 1 186 -7 2 1218 1002 226 5 5 chr4 83008806 83009015 -72621105 - B3 SINE B2 -7 209 1 2 1218 1226 123 0 11 chr4 83009061 83009250 -72620870 - B2_Mm2 SINE B2 -8 187 1 2 1218 1369 282 98 25 chr4 83009274 83009714 -72620406 - Lx8 LINE L1 -830 6643 6172 2 1218 619 75 53 0 chr4 83009766 83009860 -72620260 - B2_Mm1a SINE B2 -4 189 91 2 1218 571 292 138 29 chr4 83010328 83010395 -72619725 - L1M2 LINE L1 -793 5350 5276 2 1218 180 0 0 0 chr4 83010395 83010415 -72619705 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1218 571 292 138 29 chr4 83010415 83010696 -72619424 - L1M2 LINE L1 -868 5275 4965 2 1218 446 0 19 0 chr4 83010881 83010935 -72619185 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1218 584 170 9 9 chr4 83010935 83011048 -72619072 + RLTR16 LTR ERVK 4 116 -389 2 1218 576 288 7 0 chr4 83011058 83011197 -72618923 - ID_B1 SINE B4 -5 219 80 2 1218 634 221 110 7 chr4 83011216 83011362 -72618758 - RSINE1 SINE B4 -2 163 3 3 1218 628 259 11 75 chr4 83011931 83012119 -72618001 - B3A SINE B2 -5 193 18 3 1218 4484 8 2 12 chr4 83012152 83012650 -72617470 - MT2_Mm LTR ERVL 0 493 1 3 1218 321 0 0 0 chr4 83012650 83012688 -72617432 - MERVL-int LTR ERVL 0 5485 5448 3 1218 362 167 46 35 chr4 83012688 83012775 -72617345 - ORR1A3-int LTR MaLR -1323 640 553 3 1218 37069 17 0 0 chr4 83012775 83016847 -72613273 - MERVL-int LTR ERVL -125 5360 1288 3 1218 6472 14 30 0 chr4 83016836 83017955 -72612165 - MERVL-int LTR ERVL -4333 1152 1 3 1218 4484 8 2 12 chr4 83017955 83018453 -72611667 - MT2_Mm LTR ERVL 0 493 1 3 1218 2916 92 17 12 chr4 83018555 83018960 -72611160 + MTB_Mm LTR MaLR 1 407 0 3 1218 1553 214 89 87 chr4 83018966 83019518 -72610602 + RLTR31_Mur LTR ERVK 1 553 0 3 1218 3587 260 68 21 chr4 83019520 83020611 -72609509 + RMER15-int LTR ERVL 569 1710 -3289 3 1218 1581 36 91 0 chr4 83020626 83020846 -72609274 - ORR1A1 LTR MaLR -1 345 106 3 1218 830 165 22 43 chr4 83020844 83021028 -72609092 + RMER19B LTR ERVK 667 846 -56 3 1218 376 216 163 43 chr4 83021174 83021266 -72608854 - PB1D10 SINE Alu -2 115 13 3 1218 1598 21 27 0 chr4 83021272 83021458 -72608662 - B2_Mm1a SINE B2 -1 192 2 4 1218 280 300 381 11 chr4 83022031 83022192 -72607928 - ID_B1 SINE B4 -2 222 2 4 1218 236 77 0 25 chr4 83023031 83023071 -72607049 + (TTAG)n Simple_repeat Simple_repeat 4 42 0 4 1218 409 320 48 8 chr4 83023071 83023197 -72606923 - RSINE1 SINE B4 -5 160 30 4 1218 2282 153 70 117 chr4 83023584 83024139 -72605981 + RLTR24 LTR ERV1 1 529 0 4 1218 765 221 0 0 chr4 83024291 83024427 -72605693 + B1_Mur1 SINE Alu 2 137 -12 4 1218 240 86 0 0 chr4 83024427 83024462 -72605658 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1218 726 258 32 0 chr4 83024471 83024661 -72605459 + ORR1E LTR MaLR 1 196 -163 4 1218 849 163 0 0 chr4 83024889 83025030 -72605090 - URR1A DNA MER1_type -85 141 1 4 1218 1075 204 196 42 chr4 83025030 83025435 -72604685 - MT2A LTR ERVL -16 517 96 4 1218 1825 281 67 9 chr4 83025572 83026096 -72604024 + MERVL_2A-int LTR ERVL 3534 4087 -1674 5 1218 288 294 116 14 chr4 83026255 83026393 -72603727 - MER5B DNA MER1_type -12 166 15 5 1218 953 248 99 99 chr4 83026570 83026680 -72603440 + ORR1E LTR MaLR 2 108 -251 5 1218 713 171 54 0 chr4 83026680 83026809 -72603311 + B1_Mur4 SINE Alu 2 137 -13 5 1218 953 248 99 99 chr4 83026809 83027051 -72603069 + ORR1E LTR MaLR 109 354 -5 5 1218 348 263 11 0 chr4 83027055 83027150 -72602970 + PB1D10 SINE Alu 19 114 -3 5 1218 450 282 86 20 chr4 83027423 83027575 -72602545 + RSINE1 SINE B4 4 165 0 5 1218 344 97 0 16 chr4 83027575 83027638 -72602482 + (CCA)n Simple_repeat Simple_repeat 1 62 0 5 1218 2220 179 47 5 chr4 83027944 83028348 -72601772 + MTC LTR MaLR 1 421 0 5 1218 31 58 0 0 chr4 83029690 83029742 -72600378 + AT_rich Low_complexity Low_complexity 1 52 0 5 1218 912 72 0 31 chr4 83030738 83030867 -72599253 + B2_Mm2 SINE B2 2 126 -69 5 1218 189 74 0 0 chr4 83030902 83030929 -72599191 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1218 21 0 0 0 chr4 83032097 83032118 -72598002 + AT_rich Low_complexity Low_complexity 1 21 0 6 1218 2197 173 34 5 chr4 83032869 83033276 -72596844 - MTD LTR MaLR 0 419 1 6 1218 185 0 40 0 chr4 83033920 83033945 -72596175 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1218 1806 130 12 44 chr4 83034022 83034280 -72595840 - RMER6B LTR ERVK 0 461 209 6 1218 189 0 0 0 chr4 83034280 83034301 -72595819 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1218 1806 130 12 44 chr4 83034301 83034381 -72595739 - RMER6B LTR ERVK -253 208 134 6 1218 539 28 28 0 chr4 83034382 83034453 -72595667 + B1_Mur4 SINE Alu 67 139 -11 6 1218 374 19 19 0 chr4 83035231 83035283 -72594837 + B1_Mur4 SINE Alu 92 144 -6 6 1218 405 0 0 0 chr4 83035285 83035330 -72594790 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1218 705 235 72 14 chr4 83035833 83036040 -72594080 + MER57C2 LTR ERV1 11 229 -205 6 1218 837 41 177 54 chr4 83036175 83036305 -72593815 + B1_Mus1 SINE Alu 2 147 -1 7 1218 495 0 0 0 chr4 83036305 83036360 -72593760 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1218 2465 145 26 125 chr4 83036903 83037323 -72592797 + RLTR24 LTR ERV1 6 417 -112 7 1218 1212 28 14 0 chr4 83037323 83037468 -72592652 + B1_Mus2 SINE Alu 1 147 0 7 1218 2465 145 26 125 chr4 83037468 83037629 -72592491 + RLTR24 LTR ERV1 418 529 0 7 1218 549 135 0 0 chr4 83037764 83037853 -72592267 + (GGGAGA)n Simple_repeat Simple_repeat 2 90 0 7 1218 342 156 143 0 chr4 83037975 83038052 -72592068 - MTC LTR MaLR -333 88 1 7 1218 440 151 308 22 chr4 83038365 83038490 -72591630 - Lx7 LINE L1 -165 7531 7392 7 1218 957 101 0 0 chr4 83038490 83038629 -72591491 + (TA)n Simple_repeat Simple_repeat 1 139 0 7 1218 440 151 308 22 chr4 83038629 83038727 -72591393 - Lx7 LINE L1 -305 7391 7246 7 1218 351 268 0 0 chr4 83039092 83039163 -72590957 - tRNA-Ala-GCY_ tRNA tRNA -3 72 2 7 1218 234 312 21 21 chr4 83039475 83039570 -72590550 + RMER10B LTR ERVL 247 341 -57 7 1218 975 242 140 9 chr4 83039648 83039977 -72590143 - ORR1D1 LTR MaLR -2 372 1 8 1218 366 91 0 0 chr4 83040102 83040157 -72589963 - B2_Mm2 SINE B2 -94 101 47 8 1218 1343 80 11 0 chr4 83040185 83040361 -72589759 - B2_Mm1t SINE B2 -14 179 2 8 1218 1540 33 50 0 chr4 83040757 83040939 -72589181 + B2_Mm1a SINE B2 1 191 -2 8 1218 232 247 90 162 chr4 83041223 83041334 -72588786 + RMER20B LTR ERVK 350 452 -175 8 1218 454 114 278 9 chr4 83041330 83041445 -72588675 - B2_Mm2 SINE B2 -3 192 47 8 1218 1339 91 11 0 chr4 83041477 83041653 -72588467 - B2_Mm1t SINE B2 -14 179 2 8 1218 256 361 10 30 chr4 83041822 83041922 -72588198 + RMER20B LTR ERVK 515 612 -15 8 1218 346 269 48 0 chr4 83043599 83043703 -72586417 - PB1D10 SINE Alu -7 110 2 8 1218 745 188 0 139 chr4 83043997 83044170 -72585950 + B1_Mur2 SINE Alu 1 149 0 8 1218 474 217 99 15 chr4 83044305 83044436 -72585684 + B4A SINE B4 91 232 -60 8 1218 655 152 23 8 chr4 83044548 83044681 -72585439 + RLTR15 LTR ERVK 1 135 -224 9 1218 1707 216 98 9 chr4 83044672 83044732 -72585388 - RLTR20A LTR ERVK -32 509 437 9 1218 324 0 0 0 chr4 83044732 83044768 -72585352 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1218 1707 216 98 9 chr4 83044768 83045174 -72584946 - RLTR20A LTR ERVK -105 436 2 9 1218 1077 62 35 0 chr4 83045399 83045543 -72584577 - B1_Mur4 SINE Alu 0 150 2 9 1218 736 197 20 33 chr4 83045634 83045786 -72584334 + B1_Mur4 SINE Alu 1 150 0 9 1218 459 188 0 12 chr4 83047645 83047731 -72582389 + RMER10A LTR ERVL 8 92 -350 9 1218 381 216 0 0 chr4 83047729 83047803 -72582317 - B3A SINE B2 -120 78 5 9 1218 1315 95 0 11 chr4 83047847 83048028 -72582092 + B2_Mm2 SINE B2 3 181 -14 9 1218 29 0 0 0 chr4 83048212 83048241 -72581879 + AT_rich Low_complexity Low_complexity 1 29 0 9 1218 1081 108 18 0 chr4 83048501 83048667 -72581453 - ORR1C2 LTR MaLR -3 381 213 9 1218 300 71 0 0 chr4 83048669 83048706 -72581414 - ORR1C2 LTR MaLR -17 367 331 1 1218 1566 239 4 124 chr4 83048706 83048742 -72581378 - RMER19C LTR ERVK 0 611 581 1 1218 1149 73 103 6 chr4 83048742 83048907 -72581213 - B2_Mm2 SINE B2 -14 181 1 1 1218 1566 239 4 124 chr4 83048907 83049396 -72580724 - RMER19C LTR ERVK -31 580 149 1 1218 2597 197 38 43 chr4 83049397 83050027 -72580093 + RMER3D-int LTR ERVK 2187 2813 -29 1 1218 405 0 0 0 chr4 83050027 83050072 -72580048 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 1218 1790 152 81 20 chr4 83050224 83050319 -72579801 + RLTR20D LTR ERVK 1 99 -469 1 1218 2718 53 56 3 chr4 83050319 83050565 -72579555 + RLTR10D LTR ERVK 1 246 -113 1 1218 180 0 0 0 chr4 83050565 83050585 -72579535 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1218 2718 53 56 3 chr4 83050585 83050679 -72579441 + RLTR10D LTR ERVK 247 357 -2 1 1218 1790 152 81 20 chr4 83050679 83050931 -72579189 + RLTR20D LTR ERVK 100 369 -199 1 1218 202 139 28 0 chr4 83050983 83051019 -72579101 + GA-rich Low_complexity Low_complexity 2 38 0 1 1218 343 244 47 39 chr4 83051123 83051251 -72578869 + RLTR11B LTR ERVK 284 412 -41 1 1218 399 41 0 0 chr4 83051439 83051488 -72578632 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1218 1151 44 0 0 chr4 83051809 83051946 -72578174 + B1_Mm SINE Alu 1 137 -10 1 1218 264 243 41 41 chr4 83051962 83052035 -72578085 - B1_Mur2 SINE Alu -13 136 64 1 1218 526 218 0 136 chr4 83052245 83052399 -72577721 + RSINE1 SINE B4 3 135 -30 1 1218 326 212 12 24 chr4 83052475 83052557 -72577563 + ID4_ SINE ID 3 83 0 1 1218 270 54 0 0 chr4 83052740 83052777 -72577343 + B2_Mm2 SINE B2 2 38 -157 1 1218 964 89 67 0 chr4 83052783 83052918 -72577202 + B1_Mus1 SINE Alu 5 148 0 1 1218 1068 51 25 25 chr4 83052942 83053103 -72577017 + B2_Mm2 SINE B2 27 187 -8 1 1218 246 128 0 0 chr4 83053175 83053214 -72576906 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1218 361 279 56 39 chr4 83053241 83053420 -72576700 - RMER2 LTR ERV1 0 567 386 1 1218 3095 84 88 31 chr4 83053751 83054231 -72575889 + LTRIS4 LTR ERV1 1 507 0 1 1218 594 183 33 0 chr4 83054321 83054441 -72575679 - B1_Mus2 SINE Alu -23 124 1 1 1218 835 218 189 51 chr4 83054573 83054650 -72575470 - RMER16 LTR ERVK 0 533 445 1 1218 1192 92 6 11 chr4 83054650 83054805 -72575315 + B2_Mm1a SINE B2 1 156 -37 1 1218 387 0 0 0 chr4 83054805 83054848 -72575272 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1218 1192 92 6 11 chr4 83054848 83054867 -72575253 + B2_Mm1a SINE B2 157 174 -19 1 1218 835 189 141 67 chr4 83054867 83055157 -72574963 - RMER16 LTR ERVK -89 444 1 1 1218 863 114 8 0 chr4 83055185 83055317 -72574803 + B2_Mm1t SINE B2 2 134 -59 1 1218 337 80 353 29 chr4 83055341 83055443 -72574677 + B2_Mm2 SINE B2 47 181 -14 1 1218 279 0 0 0 chr4 83055450 83055481 -72574639 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1218 1164 92 121 0 chr4 83055991 83056165 -72573955 - B2_Mm2 SINE B2 0 195 1 1 1218 243 88 0 0 chr4 83056186 83056220 -72573900 - PB1D7 SINE Alu -86 34 1 1 1218 1027 75 52 0 chr4 83056252 83056386 -72573734 + B1_Mm SINE Alu 1 141 -6 1 1218 597 64 0 0 chr4 83056388 83056466 -72573654 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 1218 432 0 0 0 chr4 83056467 83056515 -72573605 + (GGAAA)n Simple_repeat Simple_repeat 1 48 0 1 1218 714 215 28 0 chr4 83056631 83056775 -72573345 - B1_Mur4 SINE Alu 0 150 3 1 1218 655 227 28 21 chr4 83057195 83057339 -72572781 + B1_Mur1 SINE Alu 3 147 -2 1 1218 516 93 0 0 chr4 83057339 83057414 -72572706 + (GGA)n Simple_repeat Simple_repeat 1 75 0 1 1218 1230 48 0 0 chr4 83057492 83057639 -72572481 + B1_Mm SINE Alu 1 147 0 1 1218 638 171 17 8 chr4 83057960 83058078 -72572042 + PB1D9 SINE Alu 1 119 -1 1 1218 1130 202 88 66 chr4 83058465 83058842 -72571278 + RMER10B LTR ERVL 1 385 -13 1 1218 596 249 41 6 chr4 83060110 83060280 -72569840 + L1MB8 LINE L1 5401 5576 -608 1 1218 255 261 109 101 chr4 83060450 83060714 -72569406 + RMER10A LTR ERVL 17 258 -140 1 1218 317 65 43 0 chr4 83060714 83060760 -72569360 - MTC LTR MaLR -8 413 366 1 1218 210 154 0 0 chr4 83061098 83061123 -72568997 + A-rich Low_complexity Low_complexity 1 25 0 1 1218 1304 20 0 0 chr4 83061123 83061270 -72568850 + B1_Mm SINE Alu 1 147 0 1 1218 210 154 0 0 chr4 83061270 83061296 -72568824 + A-rich Low_complexity Low_complexity 26 51 0 1 1218 411 73 0 0 chr4 83061647 83061702 -72568418 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1218 449 156 66 11 chr4 83061850 83061941 -72568179 - B3A SINE B2 -102 96 1 1 1218 445 152 252 5 chr4 83061969 83062095 -72568025 + MTC LTR MaLR 238 390 -31 1 1218 849 175 78 17 chr4 83062088 83062268 -72567852 - B3 SINE B2 -24 192 2 1 1218 523 214 0 0 chr4 83062271 83062388 -72567732 - ID_B1 SINE B4 -1 223 107 1 1218 228 324 0 40 chr4 83062371 83062445 -72567675 - tRNA-Ala-GCA tRNA tRNA -3 72 2 1 1218 503 278 126 48 chr4 83062446 83062628 -72567492 + L1MB8 LINE L1 5747 5941 -237 1 1218 524 209 76 0 chr4 83062628 83062733 -72567387 + PB1D9 SINE Alu 1 113 -7 1 1218 503 278 126 48 chr4 83062733 83062924 -72567196 + L1MB8 LINE L1 5942 6149 -29 1 1218 415 215 32 0 chr4 83064832 83064925 -72565195 + B1F SINE Alu 6 101 -48 1 1218 1484 59 38 0 chr4 83065170 83065356 -72564764 - B2_Mm2 SINE B2 -2 193 1 1 1218 314 282 80 60 chr4 83065501 83065652 -72564468 + B4 SINE B4 67 220 -72 1 1218 598 122 125 39 chr4 83065529 83065657 -72564463 + B1_Mur1 SINE Alu 10 148 -1 1 1218 348 231 123 19 chr4 83065757 83065863 -72564257 + B1F SINE Alu 33 149 0 1 1218 356 231 81 31 chr4 83065888 83066049 -72564071 - MER5C DNA MER1_type -86 227 59 1 1218 426 285 14 0 chr4 83066216 83066360 -72563760 + (TG)n Simple_repeat Simple_repeat 2 147 0 1 1218 398 241 0 79 chr4 83066534 83066671 -72563449 + B1F SINE Alu 1 120 0 1 1218 417 39 0 0 chr4 83066852 83066903 -72563217 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1 1218 227 302 16 0 chr4 83066905 83066968 -72563152 - B1_Mus2 SINE Alu -43 104 41 1 1218 274 111 63 0 chr4 83067955 83068018 -72562102 + T-rich Low_complexity Low_complexity 6 72 0 1 1218 883 41 41 0 chr4 83068653 83068775 -72561345 + B1_Mus2 SINE Alu 21 147 0 1 1218 475 240 30 14 chr4 83069359 83069500 -72560620 + B1F SINE Alu 2 149 0 1 1218 384 309 62 102 chr4 83069674 83069998 -72560122 - LTR41 LTR ERVL -445 323 13 1 1218 374 248 88 10 chr4 83070173 83070275 -72559845 + PB1D10 SINE Alu 1 110 -7 1 1218 656 167 0 202 chr4 83070283 83070377 -72559743 + B1_Mur4 SINE Alu 1 58 -92 1 1218 1172 57 0 0 chr4 83070377 83070517 -72559603 - B1_Mus2 SINE Alu -7 140 1 1 1218 656 167 0 202 chr4 83070517 83070610 -72559510 + B1_Mur4 SINE Alu 59 150 0 1 1218 222 62 0 0 chr4 83070672 83070704 -72559416 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1218 371 261 169 0 chr4 83071049 83071179 -72558941 + B4A SINE B4 3 154 -138 1 1218 971 246 15 0 chr4 83071186 83071389 -72558731 + B3 SINE B2 6 211 -5 1 1218 287 209 73 15 chr4 83071424 83071492 -72558628 + B1_Mur1 SINE Alu 64 135 -14 1 1218 244 330 0 33 chr4 83071482 83071573 -72558547 + B4A SINE B4 204 291 -1 1 1218 387 237 193 0 chr4 83071796 83071910 -72558210 + ID_B1 SINE B4 89 224 0 1 1218 736 275 196 46 chr4 83071917 83072054 -72558066 + L1MC4a LINE L1 6775 6905 -977 1 1218 1289 34 0 0 chr4 83072054 83072202 -72557918 + B1_Mus1 SINE Alu 1 148 0 1 1218 736 275 196 46 chr4 83072202 83072551 -72557569 + L1MC4a LINE L1 6906 7334 -548 1 1218 189 74 0 0 chr4 83072551 83072578 -72557542 + (AACTG)n Simple_repeat Simple_repeat 5 31 0 1 1218 736 275 196 46 chr4 83072578 83073053 -72557067 + L1MC4a LINE L1 7335 7881 -1 1 1218 369 237 0 13 chr4 83073055 83073132 -72556988 + ID4 SINE ID 1 76 -7 1 1218 361 244 11 32 chr4 83073132 83073148 -72556972 + ID_B1 SINE B4 1 91 -133 1 1218 294 166 185 0 chr4 83073166 83073256 -72556864 + B3A SINE B2 9 112 -104 1 1218 244 222 24 132 chr4 83073377 83073460 -72556660 + B3 SINE B2 141 214 -2 1 1218 1091 37 8 0 chr4 83073471 83073605 -72556515 - B1_Mus1 SINE Alu -12 136 2 1 1218 464 212 71 0 chr4 83074012 83074111 -72556009 - B1_Mur2 SINE Alu -43 106 1 1 1218 404 244 84 30 chr4 83074111 83074148 -72555972 - ID SINE ID -139 85 42 1 1218 236 310 112 26 chr4 83074299 83074312 -72555808 + B4 SINE B4 69 91 -201 1 1218 349 280 27 45 chr4 83074312 83074424 -72555696 + B1F2 SINE Alu 1 110 -39 1 1218 26 30 0 0 chr4 83074506 83074539 -72555581 + AT_rich Low_complexity Low_complexity 1 33 0 1 1218 391 371 21 0 chr4 83074583 83074723 -72555397 + RSINE1 SINE B4 3 145 -20 1 1218 438 53 0 0 chr4 83074729 83074786 -72555334 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1218 759 271 65 0 chr4 83074802 83075001 -72555119 + B3 SINE B2 1 212 -4 1 1218 1379 89 11 0 chr4 83075008 83075198 -72554922 + B2_Mm1t SINE B2 1 192 -1 1 1218 250 190 17 0 chr4 83075230 83075288 -72554832 + A-rich Low_complexity Low_complexity 3 61 0 1 1218 524 221 108 16 chr4 83075293 83075422 -72554698 + B1_Mur2 SINE Alu 1 141 -8 1 1218 1095 62 0 12 chr4 83075517 83075680 -72554440 - B2_Mm2 SINE B2 0 195 35 1 1218 1085 272 117 64 chr4 83075701 83075862 -72554258 - L1MB4 LINE L1 -116 6924 6767 1 1218 1018 109 7 7 chr4 83075862 83076010 -72554110 - B1_Mus1 SINE Alu 0 148 1 1 1218 1085 272 117 64 chr4 83076010 83076410 -72553710 - L1MB4 LINE L1 -274 6766 6350 1 1218 261 0 0 0 chr4 83076410 83076439 -72553681 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1218 1085 273 110 59 chr4 83076439 83076578 -72553542 - L1MB4 LINE L1 -691 6349 6186 1 1218 460 283 109 0 chr4 83076611 83076858 -72553262 - L1MB4 LINE L1 -895 6111 5838 1 1218 900 211 29 14 chr4 83076871 83077078 -72553042 - B3 SINE B2 -6 210 1 1 1218 276 30 0 0 chr4 83077195 83077228 -72552892 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 1 1218 1141 15 52 0 chr4 83077229 83077365 -72552755 - B1_Mus1 SINE Alu -5 143 1 1 1218 432 67 0 0 chr4 83077385 83077445 -72552675 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1218 654 193 17 0 chr4 83077468 83077587 -72552533 - B1_Mur1 SINE Alu -18 131 11 1 1218 366 268 75 100 chr4 83078504 83078745 -72551375 - L1MB4 LINE L1 -3650 3356 3126 1 1218 727 86 73 65 chr4 83078745 83078869 -72551251 - B1_Mus1 SINE Alu -19 129 5 1 1218 366 268 75 100 chr4 83078869 83078946 -72551174 - L1MB4 LINE L1 -3881 3125 3046 1 1218 1165 61 0 26 chr4 83079254 83079405 -72550715 - B1_Mus1 SINE Alu 0 148 2 2 1218 1093 100 92 17 chr4 83079414 83079587 -72550533 - B2_Mm2 SINE B2 -8 187 2 2 1218 250 243 97 27 chr4 83079594 83079726 -72550394 - L1MB4 LINE L1 -4747 2261 2130 1 1218 1373 142 130 36 chr4 83079806 83080113 -72550007 - ORR1B1 LTR MaLR 0 394 59 2 1218 268 242 26 167 chr4 83080282 83080332 -72549788 - RSINE1 SINE B4 -66 99 51 2 1218 1060 46 167 19 chr4 83080332 83080488 -72549632 + B2_Mm2 SINE B2 2 180 -15 2 1218 225 0 0 0 chr4 83080490 83080515 -72549605 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 2 1218 268 242 26 167 chr4 83080515 83080575 -72549545 - RSINE1 SINE B4 -115 50 2 2 1218 412 166 158 0 chr4 83080584 83080687 -72549433 - B1_Mur2 SINE Alu 0 150 26 2 1218 716 188 80 0 chr4 83080775 83080913 -72549207 + B1_Mur4 SINE Alu 2 150 0 2 1218 276 30 0 0 chr4 83080945 83080978 -72549142 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1218 251 370 12 0 chr4 83081908 83081989 -72548131 - ID4 SINE ID 0 83 2 2 1218 337 312 55 0 chr4 83082006 83082115 -72548005 + B4 SINE B4 80 194 -98 2 1218 593 114 11 0 chr4 83082028 83082130 -72547990 + B1_Mur4 SINE Alu 18 120 0 2 1218 207 139 0 0 chr4 83083726 83083762 -72546358 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 2 1218 1228 34 0 7 chr4 83083763 83083911 -72546209 - B1_Mus2 SINE Alu 0 147 1 2 1218 381 232 0 152 chr4 83083945 83083968 -72546152 + MT2B LTR ERVL 146 240 -361 2 1218 671 210 40 47 chr4 83083968 83084053 -72546067 + B1_Mur2 SINE Alu 1 84 -65 2 1218 3305 121 184 14 chr4 83084053 83084699 -72545421 - RMER6A LTR ERVK 0 756 1 2 1218 381 232 0 152 chr4 83084699 83084722 -72545398 + MT2B LTR ERVL 241 257 -344 2 1218 671 210 40 47 chr4 83084722 83084763 -72545357 + B1_Mur2 SINE Alu 85 149 0 2 1218 246 143 0 0 chr4 83084833 83084875 -72545245 - B3A SINE B2 -156 42 1 2 1218 450 0 0 0 chr4 83085101 83085151 -72544969 + (CCCTG)n Simple_repeat Simple_repeat 4 53 0 2 1218 683 161 71 28 chr4 83085390 83085531 -72544589 - B1_Mm SINE Alu 0 147 1 2 1218 235 176 0 19 chr4 83085636 83085688 -72544432 - L1MC5 LINE L1 -45 7916 7866 2 1218 321 275 33 0 chr4 83086050 83086141 -72543979 - PB1D10 SINE Alu -20 97 4 2 1218 201 74 0 0 chr4 83086368 83086395 -72543725 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 2 1218 437 311 28 43 chr4 83086395 83086536 -72543584 - B1F SINE Alu -10 139 1 2 1218 237 221 15 0 chr4 83086557 83086598 -72543522 + T-rich Low_complexity Low_complexity 31 72 0 2 1218 1257 20 7 0 chr4 83086598 83086744 -72543376 - B1_Mm SINE Alu 0 147 1 2 1218 237 221 15 0 chr4 83086744 83086770 -72543350 + T-rich Low_complexity Low_complexity 5 30 0 2 1218 348 285 30 42 chr4 83086770 83086935 -72543185 - RSINE1 SINE B4 0 165 3 2 1218 543 248 41 0 chr4 83087209 83087330 -72542790 + B1_Mus2 SINE Alu 10 135 -12 2 1218 210 254 14 0 chr4 83087895 83087966 -72542154 - PB1D7 SINE Alu -9 111 40 2 1218 264 162 22 9 chr4 83088022 83088085 -72542035 - PB1D9 SINE Alu -83 66 2 2 1218 224 231 19 0 chr4 83088039 83088091 -72542029 - B4 SINE B4 -159 133 81 2 1218 207 0 0 0 chr4 83088607 83088630 -72541490 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 1218 328 118 103 0 chr4 83088631 83088699 -72541421 - B1_Mur4 SINE Alu -6 144 70 2 1218 4493 12 2 0 chr4 83088710 83089202 -72540918 + MT2_Mm LTR ERVL 1 493 0 2 1218 48416 15 7 0 chr4 83089202 83094527 -72535593 + MERVL-int LTR ERVL 1 5360 -125 2 1218 362 167 46 35 chr4 83094527 83094614 -72535506 + ORR1A3-int LTR MaLR 553 640 -1323 2 1218 321 0 0 0 chr4 83094614 83094652 -72535468 + MERVL-int LTR ERVL 5448 5485 0 2 1218 4493 12 2 0 chr4 83094652 83095144 -72534976 + MT2_Mm LTR ERVL 1 493 0 2 1218 302 220 0 0 chr4 83095148 83095198 -72534922 - B1_Mur4 SINE Alu -98 52 3 2 1218 575 185 35 56 chr4 83095442 83095585 -72534535 + B1_Mur2 SINE Alu 1 140 -9 2 1218 608 240 8 0 chr4 83096438 83096563 -72533557 + B1_Mur1 SINE Alu 3 128 -21 2 1218 813 181 0 68 chr4 83098664 83098854 -72531266 - URR1A DNA MER1_type 0 226 50 2 1219 323 269 75 0 chr4 83103234 83103327 -72526793 + PB1D7 SINE Alu 15 114 -6 2 1219 724 82 0 35 chr4 83103485 83103598 -72526522 + B2_Mm2 SINE B2 1 109 -86 2 1219 415 226 43 0 chr4 83103832 83103925 -72526195 - B3 SINE B2 -113 103 7 2 1219 198 0 0 0 chr4 83104678 83104700 -72525420 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1219 1230 61 0 0 chr4 83104700 83104847 -72525273 - B1_Mm SINE Alu 0 147 1 2 1219 234 0 0 0 chr4 83105422 83105448 -72524672 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 2 1219 288 252 15 30 chr4 83106918 83107037 -72523083 - B1F1 SINE Alu -2 147 1 2 1219 189 0 0 0 chr4 83107536 83107557 -72522563 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1219 27 29 0 0 chr4 83107774 83107808 -72522312 + AT_rich Low_complexity Low_complexity 1 34 0 2 1219 517 187 65 9 chr4 83109809 83109917 -72520203 + B1_Mur3 SINE Alu 1 114 -35 2 1219 21 71 0 0 chr4 83110047 83110089 -72520031 + AT_rich Low_complexity Low_complexity 1 42 0 2 1219 442 318 112 19 chr4 83110221 83110426 -72519694 + B4A SINE B4 6 229 -63 2 1219 209 312 8 39 chr4 83110914 83111044 -72519076 + T-rich Low_complexity Low_complexity 1 126 0 2 1219 245 311 0 0 chr4 83110915 83110989 -72519131 + CT-rich Low_complexity Low_complexity 2 75 0 2 1219 307 236 83 0 chr4 83111158 83111230 -72518890 - B3 SINE B2 -136 80 3 2 1219 251 253 75 65 chr4 83111838 83111931 -72518189 + B3A SINE B2 20 113 -82 2 1219 37 23 0 0 chr4 83112201 83112245 -72517875 + AT_rich Low_complexity Low_complexity 1 44 0 2 1219 180 77 0 0 chr4 83113115 83113141 -72516979 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1219 4102 115 89 41 chr4 83113648 83114454 -72515666 - RMER17A2 LTR ERVK -61 845 1 2 1219 395 235 20 0 chr4 83116446 83116548 -72513572 - Tigger1 DNA MER2_type -84 2334 2231 2 1219 1217 246 81 24 chr4 83116766 83117149 -72512971 - Tigger1 DNA MER2_type -206 2212 1808 2 1219 292 259 121 36 chr4 83117154 83117294 -72512826 - Tigger1 DNA MER2_type -1005 1413 1262 2 1219 375 272 113 49 chr4 83117405 83117652 -72512468 - Tigger1 DNA MER2_type -1433 985 723 2 1219 250 225 212 55 chr4 83117747 83117893 -72512227 - Tigger1 DNA MER2_type -2088 330 162 2 1219 657 204 8 8 chr4 83117930 83118063 -72512057 + B1_Mur4 SINE Alu 17 149 -1 2 1219 1172 207 135 27 chr4 83119198 83119531 -72510589 + ORR1C1 LTR MaLR 7 375 -3 2 1219 521 274 106 12 chr4 83119716 83119886 -72510234 + B3 SINE B2 2 187 -29 2 1219 688 118 18 0 chr4 83120324 83120434 -72509686 - PB1D9 SINE Alu 0 120 9 2 1219 229 208 19 19 chr4 83120640 83120694 -72509426 + B1_Mus1 SINE Alu 34 87 -61 2 1219 186 118 0 0 chr4 83121087 83121121 -72508999 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1219 772 185 15 0 chr4 83121135 83121270 -72508850 - B1_Mus1 SINE Alu -11 137 1 2 1219 310 325 83 32 chr4 83121370 83121526 -72508594 + RSINE1 SINE B4 1 164 -1 2 1219 933 86 0 21 chr4 83121593 83121735 -72508385 + B1_Mus2 SINE Alu 1 139 -8 2 1219 210 37 0 0 chr4 83121735 83121762 -72508358 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1219 1159 74 0 0 chr4 83122438 83122586 -72507534 - B1_Mus1 SINE Alu 0 148 1 2 1219 343 311 122 37 chr4 83122591 83122885 -72507235 + L1MB8 LINE L1 5851 6169 -9 2 1219 299 318 9 18 chr4 83122916 83123028 -72507092 + ID_B1 SINE B4 80 190 -34 2 1219 493 232 80 0 chr4 83123104 83123216 -72506904 + B1_Mur1 SINE Alu 2 122 -27 2 1219 1414 52 0 59 chr4 83123255 83123297 -72506823 - B2_Mm2 SINE B2 -2 193 162 2 1219 216 0 0 0 chr4 83123297 83123321 -72506799 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1219 1414 52 0 59 chr4 83123321 83123482 -72506638 - B2_Mm2 SINE B2 -34 161 2 2 1219 588 275 52 6 chr4 83123652 83123921 -72506199 + Lx6 LINE L1 7203 7394 -66 2 1219 511 174 18 44 chr4 83123952 83124066 -72506054 + PB1D9 SINE Alu 10 120 0 2 1219 1204 41 7 0 chr4 83124167 83124314 -72505806 - B1_Mus1 SINE Alu 0 148 1 2 1219 264 292 14 0 chr4 83124444 83124516 -72505604 - ID4_ SINE ID -9 74 2 2 1219 676 154 290 0 chr4 83124545 83124707 -72505413 - B3 SINE B2 -7 209 1 2 1219 1082 171 166 78 chr4 83125111 83125472 -72504648 + RMER10B LTR ERVL 6 398 0 2 1219 237 181 140 60 chr4 83125482 83125582 -72504538 - MER5A DNA MER1_type -8 181 74 2 1219 614 137 20 0 chr4 83125737 83125839 -72504281 - B1_Mus2 SINE Alu -4 143 40 2 1219 933 165 35 55 chr4 83125852 83126051 -72504069 - B2_Mm2 SINE B2 0 195 1 2 1219 633 155 52 0 chr4 83126163 83126279 -72503841 + B1_Mur4 SINE Alu 2 123 -27 2 1219 431 113 278 0 chr4 83126313 83126423 -72503697 + B1_Mur3 SINE Alu 12 149 0 2 1219 1511 57 5 20 chr4 83127326 83127522 -72502598 + B2_Mm1t SINE B2 1 193 0 2 1219 21 36 0 0 chr4 83127619 83127647 -72502473 + AT_rich Low_complexity Low_complexity 1 28 0 2 1219 552 152 94 9 chr4 83127774 83127880 -72502240 + B1_Mur4 SINE Alu 24 138 -12 2 1219 306 222 55 11 chr4 83128148 83128239 -72501881 + B1_Mur2 SINE Alu 49 143 -6 2 1219 827 183 89 22 chr4 83128587 83128811 -72501309 - RLTR15 LTR ERVK -120 239 1 2 1219 294 231 154 0 chr4 83129154 83129245 -72500875 + B3A SINE B2 15 119 -79 2 1219 22 0 0 0 chr4 83129247 83129269 -72500851 + GC_rich Low_complexity Low_complexity 1 22 0 2 1219 211 29 257 0 chr4 83129602 83129637 -72500483 - B1_Mus2 SINE Alu -18 129 86 2 1219 350 300 114 34 chr4 83130021 83130197 -72499923 - B3A SINE B2 -5 193 4 2 1219 903 145 20 27 chr4 83130722 83130871 -72499249 + B1_Mus1 SINE Alu 1 148 0 2 1219 181 71 0 87 chr4 83131886 83131932 -72498188 + G-rich Low_complexity Low_complexity 3 44 0 2 1219 180 111 0 0 chr4 83132293 83132320 -72497800 + (CCG)n Simple_repeat Simple_repeat 1 27 0 2 1219 522 0 0 0 chr4 83134096 83134154 -72495966 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1219 261 0 0 0 chr4 83134263 83134292 -72495828 + (C)n Simple_repeat Simple_repeat 1 29 0 3 1219 279 253 133 0 chr4 83134360 83134435 -72495685 - RSINE1 SINE B4 -33 132 48 3 1219 27 0 0 0 chr4 83134620 83134647 -72495473 + AT_rich Low_complexity Low_complexity 1 27 0 3 1219 312 222 0 0 chr4 83134845 83134917 -72495203 + G-rich Low_complexity Low_complexity 1 72 0 3 1219 271 202 58 35 chr4 83135061 83135148 -72494972 - MIRc SINE MIR -115 153 65 3 1219 468 199 134 79 chr4 83135597 83135761 -72494359 + B2_Mm2 SINE B2 23 195 0 3 1219 1215 137 108 0 chr4 83135817 83136021 -72494099 + URR1A DNA MER1_type 1 226 0 3 1219 296 214 0 0 chr4 83136210 83136266 -72493854 + B3A SINE B2 9 64 -134 3 1219 807 125 22 38 chr4 83136267 83136450 -72493670 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 1219 1258 145 79 85 chr4 83136485 83136801 -72493319 - RLTR24 LTR ERV1 -215 314 1 3 1219 968 88 73 0 chr4 83136888 83137025 -72493095 - B1_Mus1 SINE Alu 0 148 2 3 1219 514 264 9 0 chr4 83137360 83137470 -72492650 + PB1D9 SINE Alu 2 112 -8 3 1219 225 0 0 0 chr4 83137927 83137952 -72492168 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1219 1214 54 0 0 chr4 83137989 83138136 -72491984 - B1_Mus2 SINE Alu 0 147 1 3 1219 398 234 34 101 chr4 83138156 83138275 -72491845 - PB1D10 SINE Alu -4 113 3 3 1219 693 192 23 0 chr4 83138475 83138605 -72491515 + B1_Mur3 SINE Alu 2 134 -15 3 1219 574 216 21 14 chr4 83138619 83138760 -72491360 + L1MC1 LINE L1 5751 5892 -441 3 1219 388 236 87 13 chr4 83139008 83139105 -72491015 + L1MC1 LINE L1 5998 6103 -230 3 1219 1345 77 27 11 chr4 83139105 83139290 -72490830 + B2_Mm2 SINE B2 2 189 -6 3 1219 388 236 87 13 chr4 83139290 83139342 -72490778 + L1MC1 LINE L1 6104 6158 -175 3 1219 249 57 0 0 chr4 83139349 83139384 -72490736 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 3 1219 339 253 13 13 chr4 83139385 83139461 -72490659 - ID_B1 SINE B4 -65 159 84 3 1219 28 29 0 0 chr4 83139478 83139513 -72490607 + AT_rich Low_complexity Low_complexity 1 35 0 3 1219 483 247 71 58 chr4 83139516 83139671 -72490449 - RSINE1 SINE B4 -6 159 3 3 1219 369 260 135 152 chr4 83139721 83140070 -72490050 - L1MC1 LINE L1 -96 6237 5895 3 1219 1481 259 47 11 chr4 83140165 83140614 -72489506 - L1MC1 LINE L1 -441 5892 5428 3 1219 818 242 155 23 chr4 83140823 83141081 -72489039 + B4 SINE B4 1 292 0 3 1219 471 214 7 21 chr4 83141153 83141296 -72488824 + CT-rich Low_complexity Low_complexity 4 144 0 3 1219 683 199 44 0 chr4 83141435 83141571 -72488549 + B1_Mur1 SINE Alu 1 142 -7 3 1219 285 98 0 0 chr4 83141774 83141815 -72488305 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1219 742 197 7 39 chr4 83141840 83141993 -72488127 - B1_Mur4 SINE Alu 0 150 3 3 1219 659 246 34 22 chr4 83142121 83142300 -72487820 - B3 SINE B2 -2 214 34 3 1219 366 61 0 0 chr4 83142327 83142376 -72487744 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1219 351 264 37 52 chr4 83142729 83142779 -72487341 - RSINE1 SINE B4 -28 137 86 3 1219 261 0 0 0 chr4 83142779 83142808 -72487312 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1219 351 264 37 52 chr4 83142808 83142893 -72487227 - RSINE1 SINE B4 -80 85 4 3 1219 772 261 64 13 chr4 83142893 83143116 -72487004 - B4A SINE B4 -56 236 2 3 1219 197 0 17 102 chr4 83143134 83143193 -72486927 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1219 1180 68 0 0 chr4 83143197 83143344 -72486776 - B1_Mm SINE Alu 0 147 1 3 1219 806 181 73 271 chr4 83143391 83143819 -72486301 + ORR1C2 LTR MaLR 1 342 -42 3 1219 1140 103 51 11 chr4 83143819 83143995 -72486125 + B2_Mm2 SINE B2 3 185 -10 3 1219 806 181 73 271 chr4 83143995 83144045 -72486075 + ORR1C2 LTR MaLR 343 384 0 3 1219 708 267 26 21 chr4 83144202 83144393 -72485727 + B3A SINE B2 4 195 -3 3 1219 21 0 0 0 chr4 83144471 83144492 -72485628 + AT_rich Low_complexity Low_complexity 1 21 0 3 1219 510 257 7 4 chr4 83144749 83144887 -72485233 + B3 SINE B2 54 193 -5 3 1219 1128 66 0 0 chr4 83145087 83145224 -72484896 + B1_Mm SINE Alu 1 137 -10 3 1219 216 0 0 0 chr4 83145224 83145248 -72484872 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1219 502 302 68 10 chr4 83145311 83145518 -72484602 - ID_B1 SINE B4 -5 219 1 3 1219 222 290 0 31 chr4 83145543 83145607 -72484513 + B4A SINE B4 86 147 -145 3 1219 710 173 14 7 chr4 83145637 83145777 -72484343 + B1_Mur3 SINE Alu 9 149 0 3 1219 589 257 98 12 chr4 83145887 83146060 -72484060 - B3A SINE B2 -6 192 5 3 1219 1187 48 0 20 chr4 83146184 83146334 -72483786 - B1_Mus2 SINE Alu 0 147 1 3 1219 185 180 0 20 chr4 83146747 83146798 -72483322 + G-rich Low_complexity Low_complexity 4 53 0 3 1219 28 48 0 0 chr4 83146886 83146928 -72483192 + AT_rich Low_complexity Low_complexity 1 42 0 3 1219 299 290 50 0 chr4 83147066 83147166 -72482954 - B1_Mur2 SINE Alu 0 149 45 3 1219 366 23 0 0 chr4 83147200 83147243 -72482877 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1219 319 305 0 0 chr4 83147332 83147414 -72482706 - ID4_ SINE ID 0 83 2 3 1219 299 271 107 50 chr4 83147426 83147566 -72482554 - ID_B1 SINE B4 -1 223 76 3 1219 186 43 0 0 chr4 83147573 83147596 -72482524 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1219 720 201 0 77 chr4 83147609 83147765 -72482355 - B1_Mus2 SINE Alu -2 145 2 3 1219 768 141 0 0 chr4 83147827 83147962 -72482158 + (TA)n Simple_repeat Simple_repeat 2 136 0 3 1219 301 286 103 21 chr4 83147962 83148263 -72481857 - L1MDa LINE L1 -3848 2689 2363 3 1219 299 242 45 175 chr4 83148456 83148656 -72481464 - ORR1E LTR MaLR -11 348 175 3 1219 393 202 11 53 chr4 83148693 83148787 -72481333 + PB1D10 SINE Alu 23 112 -5 3 1219 306 0 0 0 chr4 83148788 83148822 -72481298 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1219 252 333 42 0 chr4 83148837 83148933 -72481187 - ORR1E LTR MaLR -213 146 47 3 1219 869 161 14 0 chr4 83148947 83149090 -72481030 - B1_Mus2 SINE Alu -1 146 2 3 1219 469 255 119 65 chr4 83149122 83149243 -72480877 + B4A SINE B4 4 114 -178 3 1219 2321 156 96 18 chr4 83149243 83149732 -72480388 - RLTR11A2 LTR ERVK 0 527 1 3 1219 469 255 119 65 chr4 83149732 83149778 -72480342 + B4A SINE B4 115 180 -112 3 1219 1048 244 105 13 chr4 83149955 83150270 -72479850 - MTE2b LTR MaLR -35 344 1 3 1219 368 280 56 0 chr4 83150277 83150384 -72479736 + B1F SINE Alu 36 148 -1 3 1219 422 241 0 0 chr4 83150389 83150468 -72479652 + RSINE1 SINE B4 2 80 -85 3 1219 330 45 0 0 chr4 83150484 83150528 -72479592 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1219 405 0 0 0 chr4 83150605 83150650 -72479470 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 3 1219 457 100 12 24 chr4 83150759 83150841 -72479279 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 3 1219 1128 62 14 0 chr4 83150846 83150990 -72479130 - B1_Mm SINE Alu -1 146 1 3 1219 252 0 0 0 chr4 83151019 83151047 -72479073 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1219 1223 68 20 8 chr4 83151494 83151666 -72478454 + L1Md_F2 LINE L1 5438 5615 -559 3 1219 8227 43 3 2 chr4 83151666 83152649 -72477471 + L1Md_F2 LINE L1 5587 6570 -12 3 1219 535 14 28 0 chr4 83152820 83152892 -72477228 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 3 1219 597 288 7 78 chr4 83153438 83153747 -72476373 - L1M1 LINE L1 -613 5690 5404 3 1219 333 283 109 125 chr4 83153747 83154131 -72475989 + MTE2a LTR MaLR 1 378 -1 3 1219 1725 151 28 92 chr4 83154133 83154526 -72475594 - ORR1C2 LTR MaLR 0 384 17 3 1219 309 89 0 0 chr4 83154526 83154571 -72475549 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3 1219 4647 148 96 1 chr4 83154571 83155351 -72474769 - Lx4A LINE L1 -4 7054 6201 3 1219 358 80 0 0 chr4 83155363 83155413 -72474707 - B1_Mur4 SINE Alu -99 51 2 3 1219 3177 75 0 0 chr4 83155422 83155823 -72474297 - L1_Mur2 LINE L1 -140 5737 5337 3 1219 994 130 43 5 chr4 83155861 83156046 -72474074 - ORR1C2-int LTR MaLR 0 1509 1318 3 1219 1201 211 132 103 chr4 83156046 83156601 -72473519 + RMER4B LTR ERVK 1 571 -14 3 1219 3842 216 53 77 chr4 83156623 83157818 -72472302 - ORR1C2-int LTR MaLR -186 1184 19 3 1219 226 197 14 96 chr4 83157818 83157891 -72472229 - L1M1 LINE L1 -720 5404 5338 3 1219 180 0 0 0 chr4 83157920 83157940 -72472180 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1219 731 172 86 0 chr4 83157943 83158071 -72472049 - B1_Mus2 SINE Alu -6 141 3 3 1219 1017 109 20 0 chr4 83158122 83158269 -72471851 + B1_Mur4 SINE Alu 1 150 0 3 1219 220 193 0 34 chr4 83158272 83158315 -72471805 + A-rich Low_complexity Low_complexity 4 46 0 3 1219 764 201 35 7 chr4 83158315 83158460 -72471660 + B1_Mur3 SINE Alu 1 149 0 3 1219 220 193 0 34 chr4 83158460 83158475 -72471645 + A-rich Low_complexity Low_complexity 47 60 0 3 1219 234 226 0 0 chr4 83158535 83158588 -72471532 + RMER15 LTR ERVL 141 193 -382 3 1219 1828 106 166 14 chr4 83158600 83158923 -72471197 + RMER15 LTR ERVL 167 519 -56 3 1219 333 0 0 0 chr4 83158923 83158960 -72471160 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1219 447 19 0 0 chr4 83158960 83159011 -72471109 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1219 1828 106 166 14 chr4 83159011 83159041 -72471079 + RMER15 LTR ERVL 520 574 -1 3 1219 250 232 169 34 chr4 83159043 83159132 -72470988 - B3A SINE B2 -78 120 20 3 1219 660 177 210 59 chr4 83159657 83159843 -72470277 - B3 SINE B2 -1 215 2 3 1219 534 177 0 10 chr4 83160251 83160348 -72469772 - B1_Mur1 SINE Alu -5 144 49 3 1219 542 198 175 0 chr4 83160847 83160973 -72469147 + B1_Mur2 SINE Alu 2 149 0 3 1219 822 225 35 35 chr4 83160992 83161190 -72468930 + B3A SINE B2 1 198 0 3 1219 180 219 0 0 chr4 83161286 83161327 -72468793 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1219 327 132 0 0 chr4 83161327 83161380 -72468740 + HAL1-3A_ME LINE L1 1976 2028 -830 3 1219 236 98 0 0 chr4 83161639 83161680 -72468440 + B1_Mur4 SINE Alu 110 150 0 3 1219 258 32 0 0 chr4 83161687 83161718 -72468402 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 1219 1254 27 7 0 chr4 83161722 83161868 -72468252 + B1_Mus2 SINE Alu 1 147 0 3 1219 501 224 0 0 chr4 83161932 83162030 -72468090 + B3 SINE B2 8 105 -111 4 1219 1676 36 0 0 chr4 83162035 83162228 -72467892 - B2_Mm1a SINE B2 0 193 1 4 1219 32 0 0 0 chr4 83162303 83162335 -72467785 + AT_rich Low_complexity Low_complexity 1 32 0 4 1219 1160 192 9 0 chr4 83162795 83163008 -72467112 + B3 SINE B2 1 215 -1 4 1219 358 338 33 0 chr4 83163154 83163305 -72466815 - RSINE1 SINE B4 -5 160 5 4 1219 294 292 181 16 chr4 83163358 83163596 -72466524 - B4A SINE B4 -2 290 21 4 1219 1359 203 18 173 chr4 83163597 83163795 -72466325 - ORR1D1 LTR MaLR -1 373 194 4 1219 186 43 0 0 chr4 83163795 83163818 -72466302 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1219 1359 203 18 173 chr4 83163818 83163887 -72466233 - ORR1D1 LTR MaLR -181 193 170 4 1219 297 0 0 0 chr4 83163887 83163920 -72466200 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1219 1359 203 18 173 chr4 83163920 83164085 -72466035 - ORR1D1 LTR MaLR -205 169 7 4 1219 432 0 0 0 chr4 83164435 83164483 -72465637 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1219 1419 74 16 5 chr4 83164746 83164937 -72465183 + B2_Mm2 SINE B2 3 195 0 4 1219 461 302 22 0 chr4 83165109 83165248 -72464872 - B1F1 SINE Alu -7 142 1 4 1219 667 230 167 80 chr4 83165248 83165536 -72464584 - L1MC1 LINE L1 -489 5844 5532 4 1219 600 14 0 0 chr4 83165537 83165606 -72464514 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 4 1219 723 10 10 20 chr4 83165607 83165705 -72464415 + (TCTCC)n Simple_repeat Simple_repeat 2 98 0 4 1219 399 41 0 0 chr4 83165705 83165754 -72464366 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 4 1219 464 166 18 0 chr4 83165754 83165846 -72464274 - PB1D9 SINE Alu -12 108 13 4 1219 1327 96 21 5 chr4 83165914 83166102 -72464018 - B2_Mm2 SINE B2 0 195 5 4 1219 869 131 99 6 chr4 83166209 83166370 -72463750 - B2_Mm2 SINE B2 -16 179 4 4 1219 645 197 35 7 chr4 83166397 83166540 -72463580 - B3A SINE B2 -48 150 4 4 1219 846 196 7 0 chr4 83166592 83166740 -72463380 - B1_Mur4 SINE Alu 0 150 2 4 1219 1288 78 10 58 chr4 83166747 83166952 -72463168 - B2_Mm2 SINE B2 0 195 1 4 1219 233 89 0 22 chr4 83166957 83167003 -72463117 - L1MC1 LINE L1 -2484 5301 5257 4 1219 1154 69 7 0 chr4 83167054 83167198 -72462922 + B1_Mus2 SINE Alu 2 146 -1 4 1219 759 225 147 0 chr4 83167323 83167541 -72462579 - ORR1D2 LTR MaLR -120 250 1 4 1219 847 139 13 40 chr4 83167563 83167713 -72462407 + B1_Mur2 SINE Alu 1 146 -3 4 1219 379 208 73 0 chr4 83168725 83168821 -72461299 + PB1D10 SINE Alu 6 108 -9 4 1219 261 0 0 0 chr4 83169045 83169074 -72461046 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1219 1211 41 0 0 chr4 83169074 83169219 -72460901 - B1_Mm SINE Alu -1 146 2 4 1219 308 222 43 22 chr4 83170038 83170130 -72459990 + B1F SINE Alu 7 100 -49 4 1219 267 283 86 12 chr4 83172351 83172513 -72457607 + MIRb SINE MIR 8 175 -33 4 1219 189 0 0 0 chr4 83172767 83172788 -72457332 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1219 286 310 85 8 chr4 83173110 83173300 -72456820 + MIRb SINE MIR 38 250 -18 4 1219 1087 90 0 0 chr4 83173528 83173672 -72456448 - U4 snRNA snRNA -1 144 1 4 1219 213 65 0 0 chr4 83173696 83173727 -72456393 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1219 432 130 0 0 chr4 83173820 83173889 -72456231 + (TTCTC)n Simple_repeat Simple_repeat 4 72 0 4 1219 1179 151 18 36 chr4 83173933 83174153 -72455967 - B3 SINE B2 0 216 1 4 1219 26 30 0 0 chr4 83174156 83174189 -72455931 + AT_rich Low_complexity Low_complexity 1 33 0 4 1219 237 355 0 13 chr4 83174272 83174349 -72455771 - RSINE1 SINE B4 -87 78 3 4 1219 377 256 51 0 chr4 83174447 83174525 -72455595 - B3A SINE B2 -66 132 51 4 1219 1142 95 6 0 chr4 83174537 83174705 -72455415 - B2_Mm1a SINE B2 -23 170 2 4 1219 477 232 18 0 chr4 83174919 83175031 -72455089 - B3A SINE B2 -80 118 5 4 1219 686 203 7 48 chr4 83175183 83175328 -72454792 - B1_Mur1 SINE Alu 0 149 11 4 1219 336 200 0 0 chr4 83175365 83175435 -72454685 + CT-rich Low_complexity Low_complexity 4 73 0 4 1219 369 235 116 78 chr4 83175436 83175565 -72454555 - B1_Mur3 SINE Alu -14 135 2 4 1219 552 246 15 51 chr4 83175607 83175744 -72454376 - B1_Mus2 SINE Alu -11 136 5 4 1219 180 77 0 0 chr4 83175882 83175908 -72454212 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1219 30 45 0 0 chr4 83175911 83175955 -72454165 + AT_rich Low_complexity Low_complexity 1 44 0 4 1219 686 137 118 30 chr4 83175955 83176090 -72454030 - B1_Mus1 SINE Alu -1 147 1 4 1219 1403 89 15 25 chr4 83176100 83176296 -72453824 - B2_Mm2 SINE B2 0 195 2 4 1219 228 67 0 0 chr4 83176505 83176535 -72453585 + (CTCTG)n Simple_repeat Simple_repeat 4 33 0 4 1219 553 269 7 0 chr4 83176916 83177057 -72453063 + ID_B1 SINE B4 81 222 -2 4 1219 668 191 73 7 chr4 83177071 83177208 -72452912 + B1_Mur1 SINE Alu 1 146 -3 4 1219 272 273 0 0 chr4 83177408 83177474 -72452646 - MLT1E1A LTR MaLR -1 679 614 4 1219 968 202 19 5 chr4 83177822 83178031 -72452089 + B3 SINE B2 1 212 -4 4 1219 1311 105 16 16 chr4 83178292 83178486 -72451634 + B2_Mm2 SINE B2 2 195 0 4 1219 627 264 103 41 chr4 83178494 83178688 -72451432 + B3 SINE B2 2 207 -9 4 1219 747 188 229 0 chr4 83178857 83179027 -72451093 + B3 SINE B2 1 209 -7 4 1219 213 222 37 0 chr4 83179155 83179209 -72450911 + MIRc SINE MIR 77 132 -136 4 1219 1154 93 134 0 chr4 83179213 83179385 -72450735 - B2_Mm2 SINE B2 0 195 1 4 1219 359 161 0 0 chr4 83180617 83180679 -72449441 - B3 SINE B2 -88 128 67 4 1219 884 108 29 0 chr4 83181235 83181374 -72448746 + B1_Mus1 SINE Alu 6 148 0 4 1219 317 263 78 28 chr4 83181416 83181557 -72448563 - ID_B1 SINE B4 0 224 77 4 1219 219 36 0 0 chr4 83182111 83182139 -72447981 + (CCCCCG)n Simple_repeat Simple_repeat 3 30 0 4 1219 345 125 0 0 chr4 83182269 83182325 -72447795 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1219 560 252 58 0 chr4 83182479 83182618 -72447502 + B1_Mur1 SINE Alu 2 148 -1 4 1219 534 54 0 8 chr4 83182686 83182770 -72447350 + L1Md_F2 LINE L1 6237 6323 -259 4 1219 3165 86 53 87 chr4 83182770 83183378 -72446742 - RLTR6_Mm LTR ERV1 -67 587 1 4 1219 6797 40 21 12 chr4 83183378 83184215 -72445905 - MMVL30-int LTR ERV1 0 3698 2854 4 1219 6871 38 147 3 chr4 83184183 83185872 -72444248 - MMVL30-int LTR ERV1 -995 2703 772 4 1219 412 301 0 59 chr4 83186220 83186372 -72443748 - MMVL30-int LTR ERV1 -7023 533 391 4 1219 6652 24 46 17 chr4 83186389 83187194 -72442926 - RLTR6-int LTR ERV1 -6950 828 1 4 1219 3594 81 48 80 chr4 83187195 83187855 -72442265 - RLTR6_Mm LTR ERV1 -15 639 1 4 1219 2116 42 4 0 chr4 83187855 83188114 -72442006 + L1Md_F2 LINE L1 6323 6582 0 4 1219 794 158 13 33 chr4 83188215 83188366 -72441754 - B1_Mur3 SINE Alu 0 149 2 4 1219 21 0 0 0 chr4 83188475 83188496 -72441624 + AT_rich Low_complexity Low_complexity 1 21 0 4 1219 404 37 19 0 chr4 83188610 83188664 -72441456 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1219 437 187 0 0 chr4 83188725 83188800 -72441320 - B3 SINE B2 -139 77 3 4 1219 406 232 252 44 chr4 83188868 83189138 -72440982 - L1MB8 LINE L1 -198 5976 5651 4 1219 1135 88 0 0 chr4 83189138 83189286 -72440834 - B1_Mus1 SINE Alu 0 148 1 4 1219 814 247 102 18 chr4 83189292 83189682 -72440438 - L1MB8 LINE L1 -579 5595 5175 4 1219 607 284 80 15 chr4 83189782 83190107 -72440013 - L1MB8 LINE L1 -942 5204 4859 4 1219 561 236 98 33 chr4 83190104 83190288 -72439832 - L1MB8 LINE L1 -1474 4672 4477 4 1219 736 190 0 7 chr4 83190303 83190446 -72439674 - B1_Mur4 SINE Alu 0 150 9 4 1219 1333 75 6 6 chr4 83190526 83190701 -72439419 - B2_Mm2 SINE B2 -18 177 3 4 1219 21 36 0 0 chr4 83190843 83190871 -72439249 + AT_rich Low_complexity Low_complexity 1 28 0 4 1219 1859 199 71 22 chr4 83190901 83191307 -72438813 + Lx5 LINE L1 6618 7043 -7 4 1219 1279 67 66 11 chr4 83191394 83191576 -72438544 + B2_Mm2 SINE B2 2 193 -2 4 1219 579 191 35 35 chr4 83191599 83191740 -72438380 + B1_Mur4 SINE Alu 1 141 -9 4 1219 252 296 46 39 chr4 83191760 83191890 -72438230 - L1MD LINE L1 -2028 4118 3988 4 1219 332 298 27 34 chr4 83191896 83192042 -72438078 + B1F1 SINE Alu 2 146 -3 4 1219 306 258 0 0 chr4 83192046 83192108 -72438012 + ID4_ SINE ID 15 76 -7 4 1219 279 222 80 10 chr4 83192109 83192209 -72437911 - L1MB8 LINE L1 -2872 3274 3168 4 1219 344 264 0 94 chr4 83192900 83192917 -72437203 + MT2B LTR ERVL 152 157 -444 4 1219 859 140 15 0 chr4 83192917 83193053 -72437067 + B1_Mus2 SINE Alu 1 138 -9 4 1219 2405 113 68 5 chr4 83193360 83193742 -72436378 + MTC LTR MaLR 16 421 0 4 1219 282 225 75 0 chr4 83193910 83193990 -72436130 - PB1D10 SINE Alu -3 114 29 4 1219 374 240 45 96 chr4 83194950 83195148 -72434972 - B3A SINE B2 -9 189 2 4 1219 408 289 92 41 chr4 83195928 83196123 -72433997 - ID_B1 SINE B4 -17 207 3 4 1219 1417 97 0 0 chr4 83196458 83196644 -72433476 + B2_Mm2 SINE B2 2 187 -8 4 1219 757 266 56 122 chr4 83196734 83196975 -72433145 + L1ME2z LINE L1 5775 6014 -430 4 1219 839 222 28 37 chr4 83196975 83197173 -72432947 + B3 SINE B2 1 193 -23 4 1219 291 28 0 0 chr4 83197173 83197209 -72432911 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1219 839 222 28 37 chr4 83197209 83197225 -72432895 + B3 SINE B2 194 212 -4 4 1219 757 266 56 122 chr4 83197225 83197587 -72432533 + L1ME2z LINE L1 6015 6338 -106 4 1219 307 270 34 0 chr4 83197626 83197715 -72432405 - B3 SINE B2 -9 207 116 4 1219 1397 86 0 16 chr4 83198009 83198199 -72431921 + B2_Mm2 SINE B2 1 187 -8 4 1219 189 0 0 0 chr4 83198481 83198502 -72431618 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 4 1219 479 247 151 48 chr4 83198538 83198789 -72431331 - RMER20B LTR ERVK -263 364 88 4 1219 437 198 207 0 chr4 83198856 83198977 -72431143 + B3 SINE B2 23 168 -48 4 1219 440 272 76 110 chr4 83199049 83199350 -72430770 + B4A SINE B4 2 292 0 4 1219 1149 101 0 0 chr4 83199357 83199536 -72430584 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1219 585 76 0 0 chr4 83199607 83199686 -72430434 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 5 1219 1299 90 28 0 chr4 83199686 83199864 -72430256 - B2_Mm2 SINE B2 -12 183 1 5 1219 339 89 0 0 chr4 83199916 83199972 -72430148 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1219 373 316 14 49 chr4 83199972 83200105 -72430015 - RSINE1 SINE B4 -25 140 13 5 1219 22 56 0 0 chr4 83200119 83200155 -72429965 + AT_rich Low_complexity Low_complexity 1 36 0 5 1219 601 173 150 0 chr4 83200162 83200289 -72429831 - B1_Mus2 SINE Alu 0 147 2 5 1219 399 107 0 35 chr4 83200864 83200951 -72429169 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 5 1219 1150 55 0 27 chr4 83201293 83201442 -72428678 - B1_Mus2 SINE Alu 0 147 3 5 1219 1014 157 0 0 chr4 83201549 83201727 -72428393 + CT-rich Low_complexity Low_complexity 1 178 0 5 1219 1198 50 0 0 chr4 83201730 83201871 -72428249 - B1_Mus1 SINE Alu -7 141 1 5 1219 800 151 104 6 chr4 83201875 83201893 -72428227 - B2_Mm2 SINE B2 0 195 178 5 1219 351 0 0 0 chr4 83201893 83201932 -72428188 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1219 800 151 104 6 chr4 83201932 83202086 -72428034 - B2_Mm2 SINE B2 -18 177 6 5 1219 360 289 259 6 chr4 83203493 83203667 -72426453 - ID_B1 SINE B4 -6 218 1 5 1219 522 227 15 22 chr4 83204149 83204284 -72425836 - ID_B1 SINE B4 -3 221 88 5 1219 1718 24 5 9 chr4 83204482 83204695 -72425425 - L1_Mus1 LINE L1 -3 6564 6353 5 1219 2442 40 3 3 chr4 83204695 83204989 -72425131 + L1_Mus1 LINE L1 5758 6051 -516 5 1219 318 260 56 28 chr4 83205038 83205145 -72424975 - Lx8 LINE L1 -201 7272 7163 5 1219 1184 245 78 94 chr4 83205148 83205456 -72424664 - Lx8 LINE L1 -253 7220 6921 5 1219 789 214 64 39 chr4 83205456 83205660 -72424460 - B3 SINE B2 -7 209 1 5 1219 1184 245 78 94 chr4 83205660 83205788 -72424332 - Lx8 LINE L1 -553 6920 6791 5 1219 180 0 0 0 chr4 83205802 83205822 -72424298 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1219 500 152 232 0 chr4 83205829 83205928 -72424192 - B1_Mus1 SINE Alu -20 128 7 5 1219 266 232 0 51 chr4 83205877 83205936 -72424184 - B4 SINE B4 -151 141 86 5 1219 1466 273 26 31 chr4 83206262 83206678 -72423442 - Lx8 LINE L1 -680 6793 6380 5 1219 1874 160 66 11 chr4 83206684 83207050 -72423070 - MTC LTR MaLR -8 413 28 5 1219 1550 287 68 49 chr4 83207050 83207968 -72422152 - Lx8 LINE L1 -1142 6331 5315 5 1219 806 140 84 0 chr4 83207968 83208111 -72422009 + B3 SINE B2 1 155 -61 5 1219 243 0 0 0 chr4 83208112 83208139 -72421981 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1219 1736 279 82 50 chr4 83208139 83209018 -72421102 - Lx8 LINE L1 -769 5374 4443 5 1219 903 147 264 0 chr4 83209018 83209181 -72420939 - B3 SINE B2 -9 207 2 5 1219 1736 279 82 49 chr4 83209181 83209244 -72420876 - Lx8 LINE L1 -1675 4468 4412 5 1219 616 200 6 142 chr4 83209244 83209323 -72420797 - B1_Mus1 SINE Alu -1 147 88 5 1219 1414 78 11 0 chr4 83209323 83209514 -72420606 + B2_Mm1a SINE B2 1 193 0 5 1219 616 200 6 142 chr4 83209514 83209603 -72420517 - B1_Mus1 SINE Alu -61 87 2 5 1219 1736 284 76 74 chr4 83209603 83209680 -72420440 - Lx8 LINE L1 -1732 4411 4302 5 1219 384 286 0 0 chr4 83209733 83209817 -72420303 - RSINE1 SINE B4 -69 96 13 5 1219 503 272 52 87 chr4 83209818 83209968 -72420152 - Lx8 LINE L1 -1537 4343 4204 5 1219 438 292 28 7 chr4 83209968 83210113 -72420007 - B1_Mur2 SINE Alu 0 149 2 5 1219 503 272 52 87 chr4 83210113 83210308 -72419812 - Lx8 LINE L1 -1677 4203 4010 5 1219 209 119 24 0 chr4 83210309 83210351 -72419769 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 5 1219 5360 127 50 13 chr4 83210363 83211227 -72418893 - Lx3B LINE L1 -1 6972 6077 5 1219 8000 105 12 58 chr4 83211227 83211449 -72418671 + Lx4B LINE L1 4662 4867 -1019 5 1219 1173 75 0 0 chr4 83211449 83211596 -72418524 - B1_Mm SINE Alu 0 147 1 5 1219 8000 110 18 55 chr4 83211596 83212737 -72417383 + Lx4B LINE L1 4868 5995 -1063 5 1219 528 246 0 24 chr4 83212954 83213079 -72417041 - L1_Rod LINE L1 -1923 3924 3803 5 1219 489 34 0 0 chr4 83213685 83213744 -72416376 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1219 234 258 54 77 chr4 83213881 83213943 -72416177 - Lx7 LINE L1 -618 7078 7022 5 1219 2550 34 3 56 chr4 83213943 83214283 -72415837 - RLTRETN_Mm LTR ERVK 0 322 1 5 1219 234 258 54 77 chr4 83214283 83214350 -72415770 - Lx7 LINE L1 -675 7021 6952 5 1219 2254 280 72 57 chr4 83214345 83214719 -72415401 + Lx8 LINE L1 5642 6002 -1471 5 1219 782 226 78 5 chr4 83214719 83214910 -72415210 + B3 SINE B2 1 205 -11 5 1219 2254 280 72 57 chr4 83214910 83215445 -72414675 + Lx8 LINE L1 6003 6565 -908 5 1219 352 191 0 0 chr4 83215459 83215522 -72414598 - 4.5SRNA scRNA scRNA -19 75 13 5 1219 235 135 0 0 chr4 83215519 83215556 -72414564 + B1_Mur3 SINE Alu 80 116 -33 5 1219 210 71 0 0 chr4 83215565 83215593 -72414527 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1219 518 327 173 7 chr4 83215609 83215898 -72414222 + Lx8 LINE L1 6584 6910 -786 5 1219 611 248 62 0 chr4 83216053 83216198 -72413922 - B3A SINE B2 -43 155 2 5 1219 351 0 0 0 chr4 83216997 83217036 -72413084 + (CAA)n Simple_repeat Simple_repeat 3 41 0 5 1219 867 278 100 39 chr4 83217039 83217530 -72412590 + L1M2 LINE L1 4637 5157 -986 5 1219 773 169 7 33 chr4 83217673 83217826 -72412294 - B1_Mur4 SINE Alu -1 149 1 5 1219 795 166 22 0 chr4 83217917 83218056 -72412064 - B1_Mur4 SINE Alu 0 150 9 5 1219 944 199 48 34 chr4 83218066 83218274 -72411846 - B3 SINE B2 0 216 6 5 1219 1245 200 150 39 chr4 83218415 83218748 -72411372 + ORR1D2 LTR MaLR 1 370 0 5 1219 357 288 22 36 chr4 83219014 83219151 -72410969 - RSINE1 SINE B4 -28 137 3 5 1219 285 146 0 0 chr4 83220055 83220103 -72410017 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1219 632 204 187 38 chr4 83220258 83220446 -72409674 - ORR1D2 LTR MaLR -5 414 152 5 1219 1421 184 125 3 chr4 83220460 83220781 -72409339 + ORR1D1 LTR MaLR 11 370 -4 5 1219 716 163 35 0 chr4 83220792 83220933 -72409187 - ORR1D2 LTR MaLR -224 146 1 5 1219 3958 240 67 60 chr4 83220933 83222292 -72407828 - ORR1D2-int LTR MaLR 0 1370 3 5 1219 1070 249 148 30 chr4 83222294 83222610 -72407510 - ORR1D2 LTR MaLR 0 421 14 5 1219 252 254 27 40 chr4 83222625 83222699 -72407421 - RSINE1 SINE B4 -22 143 71 5 1219 212 158 0 0 chr4 83222794 83222832 -72407288 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1219 180 0 0 0 chr4 83222884 83222904 -72407216 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1219 609 165 82 89 chr4 83222977 83223123 -72406997 + B1_Mus2 SINE Alu 2 146 -1 5 1219 216 97 0 0 chr4 83223162 83223193 -72406927 + (CAA)n Simple_repeat Simple_repeat 2 32 0 5 1219 313 336 41 62 chr4 83223454 83223600 -72406520 + ID_B1 SINE B4 41 183 -41 5 1219 447 236 37 19 chr4 83223589 83223697 -72406423 + B3 SINE B2 106 215 -1 5 1219 7635 47 0 10 chr4 83224419 83225314 -72404806 + L1Md_F2 LINE L1 5697 6582 0 5 1219 200 35 35 0 chr4 83225618 83225647 -72404473 + (TTC)n Simple_repeat Simple_repeat 2 31 0 5 1219 423 0 0 0 chr4 83226016 83226063 -72404057 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 1219 1465 65 11 21 chr4 83226812 83227001 -72403119 - B2_Mm1t SINE B2 -5 188 2 5 1219 431 220 153 21 chr4 83227194 83227338 -72402782 - RSINE1 SINE B4 0 165 3 5 1219 256 333 39 0 chr4 83227485 83227563 -72402557 - ID2 SINE ID -2 81 1 5 1219 423 286 169 63 chr4 83227710 83227852 -72402268 - RSINE1 SINE B4 0 165 9 5 1219 279 0 0 0 chr4 83227883 83227914 -72402206 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 5 1219 477 0 0 0 chr4 83227922 83227975 -72402145 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 5 1219 475 323 16 0 chr4 83227976 83228100 -72402020 - B1F SINE Alu -12 137 12 5 1219 225 346 0 0 chr4 83228176 83228257 -72401863 - L2 LINE L2 -972 2447 2367 5 1219 315 0 0 0 chr4 83228515 83228550 -72401570 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1219 978 301 85 7 chr4 83228619 83229078 -72401042 - L1MB8 LINE L1 -4 6174 5680 5 1219 1149 113 36 2 chr4 83229085 83229279 -72400841 - ORR1B1 LTR MaLR 0 378 180 5 1219 1559 121 0 0 chr4 83229389 83229612 -72400508 - Lx2 LINE L1 0 6997 6775 5 152 7199 122 18 4 chr4 83229612 83231049 -72399071 - Lx2 LINE L1 -354 6643 5192 5 1220 703 71 188 0 chr4 83231045 83231157 -72398963 - MusHAL1 LINE L1 -1708 1004 872 5 1220 222 37 0 0 chr4 83231177 83231204 -72398916 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1220 332 120 0 0 chr4 83231204 83231245 -72398875 - B1_Mm SINE Alu -10 137 97 5 1220 2389 103 8 22 chr4 83231558 83231917 -72398203 + ORR1B1 LTR MaLR 41 394 0 5 1220 289 235 38 75 chr4 83232009 83232115 -72398005 - L1MB8 LINE L1 -743 5403 5302 5 1220 229 196 38 76 chr4 83232112 83232217 -72397903 + L1MC3 LINE L1 7654 7754 -31 5 1220 1378 88 5 11 chr4 83232449 83232633 -72397487 - B2_Mm1a SINE B2 -9 184 2 5 1220 230 118 0 0 chr4 83232704 83232738 -72397382 + B1_Mus2 SINE Alu 94 127 -20 5 1220 230 0 0 32 chr4 83232744 83232775 -72397345 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1220 518 246 35 21 chr4 83232917 83233060 -72397060 - B3 SINE B2 -6 192 36 5 1220 407 310 96 7 chr4 83233075 83233221 -72396899 - RSINE1 SINE B4 -5 160 2 5 1220 989 101 0 0 chr4 83233234 83233372 -72396748 - B1_Mus1 SINE Alu 0 148 11 5 1220 28 48 0 0 chr4 83233534 83233576 -72396544 + AT_rich Low_complexity Low_complexity 1 42 0 5 1220 900 249 0 35 chr4 83233583 83233783 -72396337 - B3 SINE B2 -2 214 22 5 1220 323 246 100 50 chr4 83233814 83233934 -72396186 - MTEb LTR MaLR -7 372 247 5 1220 597 301 6 12 chr4 83234041 83234206 -72395914 - RSINE1 SINE B4 0 165 2 5 1220 21 57 0 0 chr4 83234502 83234537 -72395583 + AT_rich Low_complexity Low_complexity 1 35 0 5 1220 23 33 0 0 chr4 83234604 83234634 -72395486 + AT_rich Low_complexity Low_complexity 1 30 0 5 1220 445 274 37 52 chr4 83235446 83235581 -72394539 - RSINE1 SINE B4 0 165 33 5 1220 15967 75 2 3 chr4 83235620 83238465 -72391655 + L1_Mus1 LINE L1 3726 6566 -1 5 1220 532 266 151 0 chr4 83238759 83238898 -72391222 - RSINE1 SINE B4 0 165 6 5 1220 1015 256 45 129 chr4 83238914 83239065 -72391055 + B4 SINE B4 28 156 -136 5 1220 1368 266 98 95 chr4 83239065 83239461 -72390659 - RLTR18 LTR ERVK -4 612 208 5 1220 264 30 0 0 chr4 83239461 83239494 -72390626 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1220 1368 266 98 95 chr4 83239494 83239707 -72390413 - RLTR18 LTR ERVK -409 207 1 5 1220 1015 274 4 51 chr4 83239707 83239781 -72390339 + B4 SINE B4 157 229 -63 5 1220 943 170 0 13 chr4 83239781 83239930 -72390190 + B1_Mus1 SINE Alu 1 147 -1 6 1220 366 23 0 0 chr4 83239932 83239975 -72390145 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1220 1015 274 4 51 chr4 83239975 83240032 -72390088 + B4 SINE B4 230 286 -6 5 1220 1075 281 25 29 chr4 83240119 83240397 -72389723 + B4 SINE B4 8 284 -8 6 1220 192 152 0 0 chr4 83240466 83240499 -72389621 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1220 656 216 92 26 chr4 83240737 83240889 -72389231 - RSINE1 SINE B4 0 165 4 6 1220 528 267 8 15 chr4 83240919 83241052 -72389068 + B1_Mur2 SINE Alu 1 132 -17 6 1220 240 35 0 0 chr4 83241062 83241091 -72389029 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1220 590 333 0 0 chr4 83242061 83242193 -72387927 + RSINE1 SINE B4 3 134 -31 6 1220 24 0 0 0 chr4 83242291 83242315 -72387805 + AT_rich Low_complexity Low_complexity 1 24 0 6 1220 414 0 0 0 chr4 83242477 83242523 -72387597 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1220 215 61 0 29 chr4 83242523 83242557 -72387563 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1220 215 178 22 0 chr4 83244104 83244149 -72385971 + B4 SINE B4 2 47 -245 6 1220 754 189 11 109 chr4 83244461 83244645 -72385475 - B2_Mm2 SINE B2 -15 180 15 6 1220 1558 179 34 24 chr4 83244883 83245225 -72384895 + ORR1D1 LTR MaLR 1 313 -61 6 1220 733 254 30 6 chr4 83245191 83245357 -72384763 + B3 SINE B2 43 212 -4 6 1220 969 151 20 0 chr4 83245361 83245507 -72384613 + B1_Mur3 SINE Alu 1 149 0 6 1220 250 186 0 17 chr4 83245509 83245569 -72384551 + A-rich Low_complexity Low_complexity 5 63 0 6 1220 552 194 350 0 chr4 83245583 83245743 -72384377 + B3 SINE B2 1 216 0 6 1220 923 191 101 5 chr4 83245996 83246185 -72383935 + B3 SINE B2 2 208 -8 6 1220 304 198 96 32 chr4 83246377 83246471 -72383649 + RLTR25B LTR ERVK 410 509 -519 6 1220 760 79 0 0 chr4 83246406 83246507 -72383613 + B1_Mus2 SINE Alu 40 140 -7 6 1220 457 290 101 64 chr4 83246661 83246849 -72383271 + B3A SINE B2 3 197 -1 6 1220 429 245 10 0 chr4 83246875 83246973 -72383147 + PB1D9 SINE Alu 3 101 -19 6 1220 287 279 73 31 chr4 83247317 83247413 -72382707 + ID_B1 SINE B4 74 173 -51 6 1220 352 205 95 35 chr4 83247330 83247428 -72382692 + PB1D10 SINE Alu 6 115 -34 6 1220 256 298 152 34 chr4 83248758 83248935 -72381185 - B3 SINE B2 -9 207 10 6 1220 731 216 40 13 chr4 83248786 83248936 -72381184 - RSINE1 SINE B4 -2 163 10 6 1220 688 181 107 20 chr4 83249167 83249364 -72380756 - Lx9 LINE L1 -7 7637 7424 6 1220 287 293 13 0 chr4 83249364 83249439 -72380681 + 4.5SRNA scRNA scRNA 9 84 -10 6 1220 244 33 0 0 chr4 83249562 83249592 -72380528 - Lx5 LINE L1 -480 6570 6541 6 1220 1154 196 107 11 chr4 83249602 83249882 -72380238 + Lx5 LINE L1 6728 7058 0 6 1220 195 42 0 0 chr4 83250535 83250559 -72379561 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6 1220 589 324 46 0 chr4 83250607 83250780 -72379340 - B4A SINE B4 -6 286 106 6 1220 216 86 0 0 chr4 83251091 83251126 -72378994 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 6 1220 572 181 57 17 chr4 83251131 83251261 -72378859 - B1_Mur1 SINE Alu -3 146 6 6 1220 486 324 7 7 chr4 83251484 83251624 -72378496 - RSINE1 SINE B4 -22 143 4 6 1220 23 0 0 0 chr4 83252563 83252586 -72377534 + AT_rich Low_complexity Low_complexity 1 23 0 6 1220 270 314 151 59 chr4 83252587 83252773 -72377347 - B3 SINE B2 -3 213 11 6 1220 598 283 82 14 chr4 83252629 83252776 -72377344 - RSINE1 SINE B4 0 165 9 6 1220 1360 50 28 11 chr4 83253093 83253275 -72376845 - B2_Mm2 SINE B2 0 195 11 6 1220 486 75 0 0 chr4 83253286 83253353 -72376767 + (ATG)n Simple_repeat Simple_repeat 1 67 0 6 1220 695 168 43 58 chr4 83253360 83253499 -72376621 - B1_Mur4 SINE Alu -1 149 13 6 1220 838 287 57 37 chr4 83253500 83253797 -72376323 - ORR1E LTR MaLR -50 309 7 6 1220 22 0 0 0 chr4 83253915 83253937 -72376183 + AT_rich Low_complexity Low_complexity 1 22 0 6 1220 386 292 99 36 chr4 83253975 83254090 -72376030 - Lx8 LINE L1 -2 7471 7344 6 1220 944 113 216 19 chr4 83254090 83254252 -72375868 - B2_Mm2 SINE B2 0 195 2 6 1220 386 292 99 36 chr4 83254252 83254328 -72375792 - Lx8 LINE L1 -130 7343 7268 6 1220 2095 249 117 91 chr4 83254327 83254562 -72375558 - Lx8 LINE L1 -323 7150 6842 6 1220 512 231 263 12 chr4 83254562 83254733 -72375387 + B3 SINE B2 3 216 0 6 1220 2095 249 117 91 chr4 83254733 83255336 -72374784 - Lx8 LINE L1 -632 6841 6290 6 1220 1921 178 59 23 chr4 83255349 83255549 -72374571 - MTD LTR MaLR -14 405 206 6 1220 291 28 0 0 chr4 83255549 83255585 -72374535 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 6 1220 1921 178 59 23 chr4 83255585 83255775 -72374345 - MTD LTR MaLR -214 205 3 6 1220 441 328 56 10 chr4 83255775 83255972 -72374148 - Lx8 LINE L1 -1180 6293 6088 6 1220 1123 266 17 10 chr4 83256286 83256617 -72373503 - Lx8 LINE L1 -1554 5919 5542 6 1220 877 245 28 19 chr4 83258778 83258990 -72371130 - B3 SINE B2 0 216 3 6 1220 976 204 56 5 chr4 83259390 83259587 -72370533 - B3 SINE B2 -9 207 1 6 1220 7909 64 3 2 chr4 83260182 83261190 -72368930 + L1_Mus1 LINE L1 5587 6567 0 6 1220 24 0 0 0 chr4 83261190 83261214 -72368906 + AT_rich Low_complexity Low_complexity 1 24 0 6 1220 180 0 0 0 chr4 83261217 83261237 -72368883 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1220 374 36 0 35 chr4 83261845 83261902 -72368218 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1220 984 55 8 0 chr4 83261910 83262038 -72368082 - B1_Mus1 SINE Alu 0 148 20 6 1220 234 0 0 0 chr4 83262050 83262076 -72368044 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1220 297 0 0 0 chr4 83262076 83262108 -72368012 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1220 221 245 20 0 chr4 83262117 83262166 -72367954 - B3A SINE B2 -55 143 94 6 1220 211 184 0 0 chr4 83262185 83262223 -72367897 - B3A SINE B2 -160 38 1 6 1220 749 214 0 21 chr4 83262624 83262767 -72367353 - B1_Mur1 SINE Alu -9 140 1 6 1220 502 263 213 18 chr4 83262795 83262845 -72367275 - B3A SINE B2 -10 206 155 6 1220 1783 175 202 8 chr4 83262845 83263231 -72366889 - RMER6B LTR ERVK 0 461 1 6 1220 502 257 227 13 chr4 83263231 83263355 -72366765 - B3A SINE B2 -40 158 1 6 1220 2338 252 59 19 chr4 83264014 83264959 -72365161 - Lx5 LINE L1 -55 7405 6161 6 1220 443 286 113 11 chr4 83266111 83266288 -72363832 + B4A SINE B4 1 195 -97 6 1220 289 200 12 24 chr4 83266339 83266421 -72363699 + CT-rich Low_complexity Low_complexity 4 84 0 6 1220 328 255 31 0 chr4 83267044 83267142 -72362978 - MamRep434 DNA TcMar -4 422 322 6 1220 885 236 25 25 chr4 83267891 83268091 -72362029 - B3 SINE B2 -9 207 8 6 1220 405 247 225 7 chr4 83269041 83269192 -72360928 - MTE2b LTR MaLR -104 275 92 6 1220 272 234 38 38 chr4 83269615 83269695 -72360425 - ID2 SINE ID -2 81 2 6 1220 433 263 77 19 chr4 83269750 83269905 -72360215 - RSINE1 SINE B4 -1 164 1 6 1220 1610 290 97 23 chr4 83270334 83270983 -72359137 - Lx8 LINE L1 -149 7324 6628 6 1220 809 228 71 67 chr4 83270998 83271266 -72358854 + MTD LTR MaLR 10 278 -141 6 1220 1443 246 54 0 chr4 83271353 83271740 -72358380 - Lx8 LINE L1 -845 6628 6221 6 1220 3151 149 112 0 chr4 83271741 83272266 -72357854 - RMER4B LTR ERVK 0 585 2 6 1220 297 0 0 0 chr4 83272530 83272563 -72357557 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1220 643 188 64 21 chr4 83273264 83273405 -72356715 - B1_Mur1 SINE Alu 0 149 3 6 1220 22 0 0 0 chr4 83273408 83273430 -72356690 + AT_rich Low_complexity Low_complexity 1 22 0 6 1220 378 295 53 1 chr4 83273643 83273789 -72356331 + B3A SINE B2 1 151 -65 6 1220 204 97 0 0 chr4 83274575 83274606 -72355514 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1220 1632 53 0 5 chr4 83274803 83274993 -72355127 - B2_Mm2 SINE B2 -5 190 2 6 1220 260 361 22 65 chr4 83274993 83275132 -72354988 + ORR1E LTR MaLR 84 216 -143 6 1220 304 164 0 116 chr4 83275146 83275215 -72354905 - ORR1D1 LTR MaLR -313 61 1 6 1220 262 296 16 0 chr4 83275223 83275323 -72354797 - Lx2B LINE L1 -1119 5881 5757 6 1220 508 275 60 60 chr4 83275372 83275554 -72354566 - B3A SINE B2 -16 182 1 6 1220 856 325 47 3 chr4 83275557 83275940 -72354180 - L1MA5 LINE L1 -473 5827 5428 6 1220 1126 197 5 46 chr4 83275951 83276169 -72353951 - B3 SINE B2 -6 210 2 6 1220 24 53 0 0 chr4 83276179 83276217 -72353903 + AT_rich Low_complexity Low_complexity 1 38 0 6 1220 427 214 77 10 chr4 83276345 83276449 -72353671 + Lx9 LINE L1 5804 5914 -1730 6 1220 1564 173 344 17 chr4 83276451 83276817 -72353303 + Lx9 LINE L1 6957 7427 -217 6 1220 384 22 0 0 chr4 83276817 83276862 -72353258 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1220 1564 206 99 20 chr4 83276862 83277041 -72353079 + Lx9 LINE L1 7428 7636 -8 6 1220 432 195 81 0 chr4 83277080 83277167 -72352953 + Lx9 LINE L1 7007 7100 -544 6 1220 381 281 26 0 chr4 83277241 83277355 -72352765 - PB1D9 SINE Alu -1 119 3 6 1220 353 322 85 17 chr4 83277372 83277549 -72352571 + MIRb SINE MIR 17 205 -63 6 1220 265 284 95 4 chr4 83277556 83277717 -72352403 + L1M4b LINE L1 3569 3687 -3647 6 1220 730 286 135 25 chr4 83277707 83278151 -72351969 + L1M4b LINE L1 4186 4678 -2328 6 1220 335 207 0 0 chr4 83278473 83278531 -72351589 - ID4_ SINE ID -2 81 24 6 1220 563 264 169 30 chr4 83278559 83279102 -72351018 + Tigger7 DNA MER2_type 23 697 -8 6 1220 444 62 0 0 chr4 83279458 83279522 -72350598 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 6 1220 4012 66 4 8 chr4 83279529 83280019 -72350101 - L1_Mus2 LINE L1 0 6566 6079 6 1220 251 279 214 0 chr4 83280034 83280174 -72349946 + L2 LINE L2 1993 2162 -1257 6 1220 549 42 0 0 chr4 83280596 83280668 -72349452 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1220 716 310 70 15 chr4 83280973 83281232 -72348888 - B4A SINE B4 -19 273 1 6 1220 619 167 70 62 chr4 83282456 83282584 -72347536 - B1_Mus2 SINE Alu -8 139 11 6 1220 21 71 0 0 chr4 83282803 83282845 -72347275 + AT_rich Low_complexity Low_complexity 1 42 0 7 1220 567 243 0 0 chr4 83282846 83282957 -72347163 + B3 SINE B2 1 111 -105 7 1220 38797 32 1 1 chr4 83282997 83290067 -72340053 - L1Md_T LINE L1 0 6585 1 7 1220 538 262 70 7 chr4 83290093 83290104 -72340016 - RSINE1 SINE B4 -13 152 142 7 1220 546 43 0 0 chr4 83290104 83290173 -72339947 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1220 538 262 70 7 chr4 83290173 83290303 -72339817 - RSINE1 SINE B4 -24 141 3 7 1220 391 302 116 32 chr4 83290441 83290631 -72339489 + LTR33 LTR ERVL 2 207 -308 7 1220 609 292 72 50 chr4 83291517 83291795 -72338325 + L1MA9 LINE L1 6028 6311 -1 7 1220 333 328 149 0 chr4 83291804 83292039 -72338081 + L2 LINE L2 2808 3077 -342 7 1220 925 188 0 7 chr4 83292346 83292496 -72337624 - B1_Mur1 SINE Alu 0 149 1 7 1220 667 284 19 0 chr4 83293049 83293211 -72336909 + B3 SINE B2 1 165 -51 7 1220 357 125 0 0 chr4 83293211 83293267 -72336853 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1220 702 222 149 47 chr4 83293914 83294235 -72335885 + ORR1E LTR MaLR 1 354 -5 7 1220 22 56 0 0 chr4 83294469 83294505 -72335615 + AT_rich Low_complexity Low_complexity 1 36 0 7 1220 913 128 83 0 chr4 83294560 83294693 -72335427 - B1_Mur4 SINE Alu -6 144 1 7 1220 219 125 0 0 chr4 83294864 83294904 -72335216 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1220 1043 198 45 55 chr4 83295021 83295281 -72334839 + MTD LTR MaLR 158 402 -17 7 1220 444 268 110 0 chr4 83295397 83295524 -72334596 - B1_Mur1 SINE Alu -8 141 1 7 1220 477 339 68 42 chr4 83295661 83296061 -72334059 - ERVL-E-int LTR ERVL -792 4875 4466 7 1220 564 366 70 11 chr4 83296073 83296528 -72333592 - ERVL-E-int LTR ERVL -1226 4488 3940 7 1220 601 335 82 18 chr4 83296541 83296884 -72333236 - ERVL-E-int LTR ERVL -1775 3892 3528 7 1220 339 85 0 0 chr4 83296913 83296960 -72333160 + (TAA)n Simple_repeat Simple_repeat 1 47 0 7 1220 665 276 138 23 chr4 83296977 83297237 -72332883 - ERVL-E-int LTR ERVL -2210 3457 3168 7 1220 330 302 46 0 chr4 83297317 83297449 -72332671 - ERVL-E-int LTR ERVL -3018 2739 2558 7 1220 253 295 61 86 chr4 83297623 83297786 -72332334 - ERVL-E-int LTR ERVL -3354 2360 2202 7 1220 651 112 0 0 chr4 83298200 83298298 -72331822 + (GA)n Simple_repeat Simple_repeat 1 98 0 7 1220 246 246 14 14 chr4 83298726 83298800 -72331320 + CT-rich Low_complexity Low_complexity 3 76 0 7 1220 1635 230 114 53 chr4 83299185 83299757 -72330363 + RMER1C Other Other 370 1341 -1 7 1220 707 253 20 0 chr4 83300456 83300602 -72329518 - B1_Mur1 SINE Alu 0 149 1 7 1220 215 406 46 65 chr4 83304753 83304906 -72325214 + MIRb SINE MIR 9 158 -110 7 1220 21 57 0 0 chr4 83304983 83305018 -72325102 + AT_rich Low_complexity Low_complexity 1 35 0 7 1220 875 250 33 19 chr4 83305022 83305234 -72324886 - B3 SINE B2 0 216 2 7 1220 257 183 0 16 chr4 83305858 83305919 -72324201 + CT-rich Low_complexity Low_complexity 1 60 0 7 1220 643 175 108 0 chr4 83305919 83306039 -72324081 - B1_Mm SINE Alu -5 142 10 7 1220 26 0 0 0 chr4 83306093 83306119 -72324001 + AT_rich Low_complexity Low_complexity 1 26 0 7 1220 2518 77 42 0 chr4 83306233 83306545 -72323575 - ORR1A2 LTR MaLR -2 325 1 7 1220 558 179 18 0 chr4 83309748 83309860 -72320260 - PB1D9 SINE Alu 0 120 7 7 1220 310 236 188 45 chr4 83309860 83309875 -72320245 - B4A SINE B4 -60 197 81 7 1220 1166 106 0 11 chr4 83310254 83310436 -72319684 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1220 323 277 82 25 chr4 83310748 83310870 -72319250 + ORR1E LTR MaLR 64 192 -167 7 1220 1791 147 117 35 chr4 83311269 83311636 -72318484 - Lx3C LINE L1 -325 6651 6255 7 1220 599 283 105 41 chr4 83311711 83312149 -72317971 - L1ME2 LINE L1 -231 5933 5468 7 1220 25 31 0 0 chr4 83312410 83312442 -72317678 + AT_rich Low_complexity Low_complexity 1 32 0 7 1220 594 234 133 0 chr4 83312561 83312719 -72317401 - Lx9 LINE L1 -215 7429 7251 7 1220 1201 212 74 9 chr4 83312747 83313104 -72317016 - RMER6C LTR ERVK -4 686 304 7 1220 7429 38 1 0 chr4 83313104 83314001 -72316119 - L1Md_F2 LINE L1 -135 6447 5550 7 1220 1972 141 54 112 chr4 83314001 83314503 -72315617 - RMER6C LTR ERVK -217 473 1 7 1220 1112 232 63 53 chr4 83314505 83314824 -72315296 - Lx9 LINE L1 -425 7219 6898 7 1220 290 323 108 40 chr4 83314825 83315047 -72315073 + MER47B DNA MER2_type 119 418 0 7 1220 23 0 0 0 chr4 83315112 83315135 -72314985 + AT_rich Low_complexity Low_complexity 1 23 0 7 1220 1517 75 16 0 chr4 83315145 83315333 -72314787 + B2_Mm1t SINE B2 2 192 -1 7 1220 723 285 74 63 chr4 83315674 83316120 -72314000 - L1M5 LINE L1 -418 5761 5311 7 1220 322 265 181 0 chr4 83316121 83316204 -72313916 - B1F SINE Alu -51 98 1 7 1220 522 46 0 0 chr4 83316250 83316315 -72313805 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 7 1220 243 0 0 0 chr4 83316316 83316343 -72313777 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 7 1220 449 230 88 9 chr4 83316349 83316463 -72313657 - B1_Mur1 SINE Alu -20 129 7 7 1220 21 36 0 0 chr4 83316666 83316694 -72313426 + AT_rich Low_complexity Low_complexity 1 28 0 7 1220 1886 114 18 0 chr4 83316703 83316983 -72313137 + ORR1A2 LTR MaLR 1 285 -42 7 1220 212 329 35 101 chr4 83317206 83317375 -72312745 - MIRb SINE MIR 0 268 111 7 1220 369 0 0 0 chr4 83317991 83318032 -72312088 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1220 234 0 0 0 chr4 83318134 83318160 -72311960 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 1220 291 136 0 0 chr4 83318176 83318235 -72311885 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1220 444 222 119 0 chr4 83318677 83318803 -72311317 - L1M4 LINE L1 -556 5628 5488 7 1220 22 0 0 0 chr4 83319285 83319307 -72310813 + AT_rich Low_complexity Low_complexity 1 22 0 7 1220 227 130 143 36 chr4 83320346 83320402 -72309718 - Lx8 LINE L1 -2 7471 7410 7 1220 578 197 8 0 chr4 83320432 83320559 -72309561 + CT-rich Low_complexity Low_complexity 1 128 0 7 1220 1165 78 14 0 chr4 83320559 83320701 -72309419 - B1_Mus2 SINE Alu -1 146 3 7 1220 180 0 0 0 chr4 83320770 83320790 -72309330 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1220 862 156 7 0 chr4 83320792 83320927 -72309193 - B1_Mus2 SINE Alu -5 142 7 7 1220 442 210 37 112 chr4 83320822 83320956 -72309164 - MT2B LTR ERVL -337 264 141 7 1220 28 48 0 0 chr4 83321054 83321096 -72309024 + AT_rich Low_complexity Low_complexity 1 42 0 7 1220 3534 275 68 56 chr4 83323119 83323761 -72306359 - Lx8 LINE L1 -56 7417 6748 7 1220 3394 39 23 0 chr4 83323761 83324148 -72305972 + MTA_Mm LTR MaLR 1 396 0 7 1220 3534 275 68 56 chr4 83324148 83324713 -72305407 - Lx8 LINE L1 -726 6747 6196 7 1220 853 154 260 0 chr4 83326483 83326652 -72303468 - B3 SINE B2 -3 213 1 7 1220 491 31 15 0 chr4 83328610 83328675 -72301445 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1220 893 192 13 157 chr4 83328691 83328926 -72301194 - B3 SINE B2 -14 202 2 7 1220 41 78 0 0 chr4 83329572 83329662 -72300458 + AT_rich Low_complexity Low_complexity 1 90 0 7 1220 32 0 0 0 chr4 83329805 83329837 -72300283 + AT_rich Low_complexity Low_complexity 1 32 0 7 1220 378 274 101 13 chr4 83329993 83330152 -72299968 - Lx8 LINE L1 -1662 5811 5639 7 1220 289 244 57 35 chr4 83330200 83330344 -72299776 - L1M LINE L1 -780 5400 5254 7 1220 10035 127 37 23 chr4 83330370 83332704 -72297416 - Lx2B LINE L1 -378 6622 4265 7 1220 655 213 138 66 chr4 83333116 83333312 -72296808 - B3 SINE B2 -6 210 1 7 1220 429 240 136 25 chr4 83333312 83333407 -72296713 + B3A SINE B2 105 216 0 7 1220 484 279 22 22 chr4 83333699 83333838 -72296282 + ID_B1 SINE B4 84 222 -2 7 1220 247 291 18 0 chr4 83333863 83333918 -72296202 + ID4 SINE ID 27 82 -1 7 1220 363 283 40 32 chr4 83333975 83334099 -72296021 + B4A SINE B4 59 183 -109 7 1220 240 347 0 0 chr4 83334117 83334189 -72295931 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1220 437 300 68 17 chr4 83334502 83334736 -72295384 + L1M4 LINE L1 5528 5773 -411 7 1220 343 191 29 0 chr4 83334987 83335055 -72295065 - ID4 SINE ID -10 73 4 7 1220 1230 160 382 41 chr4 83335441 83335706 -72294414 + MTC LTR MaLR 10 370 -51 7 1220 1320 86 0 21 chr4 83335706 83335897 -72294223 - B2_Mm2 SINE B2 -8 187 1 7 1220 1230 158 9 53 chr4 83335897 83335955 -72294165 + MTC LTR MaLR 371 421 0 7 1220 334 326 67 0 chr4 83336815 83336950 -72293170 + B1F2 SINE Alu 1 144 -5 7 1220 796 222 175 30 chr4 83340466 83340813 -72289307 - Lx7 LINE L1 0 7696 7299 7 1220 429 70 0 0 chr4 83340813 83340870 -72289250 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1220 796 222 175 30 chr4 83340870 83340922 -72289198 - Lx7 LINE L1 -398 7298 7241 7 1220 198 0 0 0 chr4 83340930 83340952 -72289168 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 7 1220 506 216 111 8 chr4 83340974 83341100 -72289020 + RMER19B LTR ERVK 1 139 -763 7 1220 1187 174 14 19 chr4 83341079 83341295 -72288825 + RMER19B LTR ERVK 60 274 -628 7 1220 372 22 0 0 chr4 83341814 83341859 -72288261 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1220 949 215 15 35 chr4 83341859 83342057 -72288063 - B3A SINE B2 -4 194 1 7 1220 375 233 37 22 chr4 83342598 83342734 -72287386 - Lx7 LINE L1 0 7696 7559 7 1220 2704 216 109 10 chr4 83342801 83343751 -72286369 - Lx7 LINE L1 -282 7414 6371 7 1220 1703 115 3 85 chr4 83343772 83344066 -72286054 - RMER6D LTR ERVK -450 270 1 7 1220 763 208 69 57 chr4 83344074 83344319 -72285801 - Lx7 LINE L1 -1622 6074 5827 7 1220 1545 189 40 27 chr4 83344319 83345000 -72285120 - L1_Mur3 LINE L1 -4348 1532 844 7 1220 445 227 56 7 chr4 83345349 83345491 -72284629 - L1_Mur3 LINE L1 -6898 830 682 7 1220 214 206 87 87 chr4 83345577 83345591 -72284529 + BC1_Mm scRNA scRNA 3 13 -139 7 1220 3140 132 41 53 chr4 83345591 83346173 -72283947 - RMER15 LTR ERVL 0 575 1 7 1220 214 206 87 87 chr4 83346173 83346227 -72283893 + BC1_Mm scRNA scRNA 14 71 -81 7 1220 982 217 58 0 chr4 83346227 83346399 -72283721 + B4 SINE B4 12 250 -42 7 1220 453 237 158 26 chr4 83346430 83346664 -72283456 - L1MA7 LINE L1 -27 6264 6000 7 1220 21 0 0 0 chr4 83346968 83346989 -72283131 + AT_rich Low_complexity Low_complexity 1 21 0 7 1220 1221 106 0 0 chr4 83347209 83347389 -72282731 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1220 435 38 0 0 chr4 83347391 83347444 -72282676 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 8 1220 1141 74 0 7 chr4 83347458 83347607 -72282513 - B1_Mus1 SINE Alu 0 148 1 8 1220 7504 49 0 8 chr4 83348223 83349522 -72280598 - L1Md_F2 LINE L1 0 6582 5299 8 1220 189 0 0 0 chr4 83349619 83349640 -72280480 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 8 1220 233 274 27 45 chr4 83349921 83349935 -72280185 + MT2B LTR ERVL 152 163 -438 8 1220 445 178 78 10 chr4 83349935 83350037 -72280083 + B1_Mus2 SINE Alu 2 110 -37 8 1220 523 250 0 9 chr4 83350421 83350530 -72279590 - PB1D10 SINE Alu -7 110 3 8 1220 25 31 0 0 chr4 83350685 83350717 -72279403 + AT_rich Low_complexity Low_complexity 1 32 0 8 1220 538 297 117 20 chr4 83350989 83351185 -72278935 + MIRb SINE MIR 3 217 -51 8 1220 402 241 24 0 chr4 83351417 83351500 -72278620 + RSINE1 SINE B4 81 165 0 8 1220 24 67 0 0 chr4 83351646 83351691 -72278429 + AT_rich Low_complexity Low_complexity 1 45 0 8 1220 215 73 0 47 chr4 83352736 83352779 -72277341 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1220 229 319 132 0 chr4 83352885 83352976 -72277144 + MER58C DNA MER1_type 56 158 -57 8 1220 296 195 89 25 chr4 83352996 83353075 -72277045 - MLT1A1 LTR MaLR 0 365 282 8 1220 318 296 42 34 chr4 83353213 83353332 -72276788 - MLT1A1 LTR MaLR -251 157 38 8 1220 25 51 0 0 chr4 83353928 83353967 -72276153 + AT_rich Low_complexity Low_complexity 1 39 0 8 1220 27 49 0 0 chr4 83354029 83354070 -72276050 + AT_rich Low_complexity Low_complexity 1 41 0 8 1220 2987 190 51 12 chr4 83354082 83354765 -72275355 + L1_Mur3 LINE L1 3699 4408 -1472 8 1220 408 40 0 0 chr4 83354811 83354861 -72275259 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1220 302 276 91 0 chr4 83355027 83355153 -72274967 + Lx8 LINE L1 5801 5931 -369 8 1220 185 211 19 0 chr4 83355182 83355234 -72274886 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1220 247 214 0 0 chr4 83356470 83356526 -72273594 - L1M5 LINE L1 -372 5790 5735 8 1220 711 216 94 55 chr4 83356565 83356820 -72273300 + Lx9 LINE L1 7373 7637 -7 8 1220 332 217 140 11 chr4 83356865 83356958 -72273162 + B1_Mur4 SINE Alu 15 119 -1 8 1220 248 274 0 0 chr4 83357988 83358050 -72272070 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 8 1220 387 89 0 0 chr4 83358096 83358152 -72271968 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1220 207 0 0 0 chr4 83358204 83358227 -72271893 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1220 3203 65 0 16 chr4 83358227 83358651 -72271469 - LTRIS2 LTR ERV1 -79 485 69 8 1220 942 204 51 0 chr4 83358651 83358886 -72271234 - MuRRS4-int LTR ERV1 -26 5037 4791 8 1220 2080 177 27 17 chr4 83359169 83359572 -72270548 - MTB_Mm LTR MaLR 0 407 1 8 1220 940 210 10 10 chr4 83359647 83359849 -72270271 - B3 SINE B2 -10 206 5 8 1220 2466 253 71 16 chr4 83360191 83360963 -72269157 - Lx9 LINE L1 -501 7143 6329 8 1221 2032 149 67 5 chr4 83362220 83362591 -72267529 + ORR1B1 LTR MaLR 1 394 0 8 1221 24 0 0 0 chr4 83362727 83362751 -72267369 + AT_rich Low_complexity Low_complexity 1 24 0 8 1221 378 349 50 44 chr4 83362979 83363138 -72266982 + MLT1G3 LTR MaLR 249 408 -187 8 1221 300 318 53 30 chr4 83363153 83363286 -72266834 + MLT1G3 LTR MaLR 460 595 0 8 1221 324 374 20 13 chr4 83363287 83363436 -72266684 - HAL1 LINE L1 -1635 872 723 8 1221 309 192 0 99 chr4 83363855 83363936 -72266184 - B3A SINE B2 -7 191 119 8 1221 23 33 0 0 chr4 83364380 83364410 -72265710 + AT_rich Low_complexity Low_complexity 1 30 0 8 1221 252 0 0 0 chr4 83365258 83365286 -72264834 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1221 184 226 125 31 chr4 83365296 83365360 -72264760 - L2 LINE L2 -2019 1400 1331 8 1221 21 57 0 0 chr4 83366198 83366233 -72263887 + AT_rich Low_complexity Low_complexity 1 35 0 8 1221 5542 96 18 22 chr4 83367143 83368039 -72262081 - L1_Mur2 LINE L1 -293 5584 4693 8 1221 291 347 40 0 chr4 83368497 83368621 -72261499 - MIRb SINE MIR -44 224 96 8 1221 791 254 63 0 chr4 83368788 83368977 -72261143 - B3 SINE B2 -7 209 9 8 1221 482 218 40 40 chr4 83369130 83369278 -72260842 - B1F1 SINE Alu -1 148 1 8 1221 189 213 0 0 chr4 83371471 83371518 -72258602 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1221 270 353 10 0 chr4 83371526 83371628 -72258492 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 8 1221 252 0 0 0 chr4 83371638 83371666 -72258454 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1221 238 189 69 42 chr4 83371880 83371952 -72258168 - ID4_ SINE ID -9 74 1 8 1221 3557 38 0 0 chr4 83372336 83372759 -72257361 - L1Md_T LINE L1 0 6582 6160 8 1221 305 221 79 17 chr4 83373489 83373595 -72256525 + MIR SINE MIR 85 197 -71 8 1221 189 0 0 0 chr4 83373806 83373827 -72256293 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 8 1221 9802 71 12 7 chr4 83373827 83375723 -72254397 - Lx3_Mus LINE L1 -22 6987 5087 8 1221 1635 208 37 21 chr4 83376491 83376869 -72253251 - Lx9 LINE L1 -804 6840 6457 8 1221 1651 211 79 7 chr4 83376864 83377321 -72252799 + Lx9 LINE L1 7154 7643 -1 8 1221 504 89 0 0 chr4 83377759 83377838 -72252282 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1221 429 20 0 0 chr4 83377838 83377887 -72252233 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1221 1360 184 193 15 chr4 83378048 83378385 -72251735 + MTD LTR MaLR 20 416 -3 8 1221 18431 149 54 8 chr4 83378596 83382229 -72247891 - Lx5 LINE L1 -3 7047 3225 8 1221 903 9 26 0 chr4 83382229 83382345 -72247775 + (TC)n Simple_repeat Simple_repeat 2 120 0 8 1221 18431 138 44 4 chr4 83382345 83383161 -72246959 - Lx5 LINE L1 -2653 3224 2376 8 1221 238 390 13 0 chr4 83383765 83383842 -72246278 - ID4 SINE ID -4 79 2 8 1221 1050 98 14 0 chr4 83384223 83384366 -72245754 - B1_Mur4 SINE Alu -5 145 1 8 1221 276 149 0 0 chr4 83385265 83385312 -72244808 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1221 418 284 68 18 chr4 83387128 83387350 -72242770 - L1MA6 LINE L1 -49 6251 6019 8 1221 39298 6 0 0 chr4 83390067 83396647 -72233473 - L1Md_A LINE L1 0 6582 1 8 1221 526 276 112 41 chr4 83397310 83397328 -72232792 - B4A SINE B4 -1 291 275 8 1221 486 0 0 0 chr4 83397328 83397382 -72232738 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1221 526 276 112 41 chr4 83397382 83397631 -72232489 - B4A SINE B4 -18 274 5 8 1221 31 0 0 0 chr4 83397861 83397892 -72232228 + AT_rich Low_complexity Low_complexity 1 31 0 8 1221 1107 245 198 45 chr4 83397908 83398691 -72231429 - Lx6 LINE L1 -3 7457 6555 8 1221 2320 71 17 75 chr4 83399044 83399393 -72230727 + ORR1A4 LTR MaLR 1 329 0 8 1221 249 159 0 0 chr4 83399661 83399705 -72230415 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1221 691 281 0 24 chr4 83399711 83399879 -72230241 - RSINE1 SINE B4 0 165 2 8 1221 3341 66 36 5 chr4 83400155 83400597 -72229523 + L1Md_F2 LINE L1 6127 6582 0 8 1221 688 224 97 38 chr4 83400615 83400801 -72229319 + B3A SINE B2 2 198 0 8 1221 440 274 9 0 chr4 83400826 83400932 -72229188 - PB1D10 SINE Alu -8 109 3 8 1221 662 275 45 28 chr4 83401198 83401374 -72228746 + B3A SINE B2 5 183 -15 8 1221 423 273 0 143 chr4 83401469 83401713 -72228407 - L1MB7 LINE L1 -202 5982 5774 8 1221 421 277 95 49 chr4 83401710 83401953 -72228167 - L1M2 LINE L1 -723 5574 5321 8 1221 2386 51 3 0 chr4 83401961 83402254 -72227866 - L1_Mus1 LINE L1 -4 6563 6270 8 1221 38168 25 1 6 chr4 83402255 83408437 -72221683 - L1Md_T LINE L1 0 6582 440 8 1221 1691 82 0 0 chr4 83408438 83408670 -72221450 - L1_Mus1 LINE L1 -284 6283 6052 8 1221 441 226 23 45 chr4 83408675 83408851 -72221269 - L1M2 LINE L1 -817 5326 5155 8 1221 251 162 40 26 chr4 83408875 83408951 -72221169 - Lx7 LINE L1 -20 7676 7600 8 1221 226 167 0 20 chr4 83408972 83409021 -72221099 + (CAAAC)n Simple_repeat Simple_repeat 1 48 0 8 1221 2976 286 53 15 chr4 83409033 83410032 -72220088 - Lx7 LINE L1 -365 7331 6295 8 1221 1613 101 89 0 chr4 83410038 83410285 -72219835 - ORR1A4 LTR MaLR 0 329 61 8 1221 191 154 45 15 chr4 83410287 83410353 -72219767 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1221 758 51 5 82 chr4 83410399 83410593 -72219527 + (TCC)n Simple_repeat Simple_repeat 1 179 0 8 1221 1112 92 0 0 chr4 83410596 83410738 -72219382 - B1_Mus1 SINE Alu -6 142 1 8 1221 3480 212 67 16 chr4 83410746 83411892 -72218228 - Lx7 LINE L1 -1602 6094 4901 8 1221 244 269 130 0 chr4 83411903 83412011 -72218109 - L1M2 LINE L1 -1087 5056 4935 8 1221 3536 140 83 9 chr4 83412042 83412691 -72217429 - RMER1A Other Other 0 1030 334 8 1221 688 290 66 56 chr4 83412755 83413091 -72217029 - L1M2 LINE L1 -1312 4831 4508 8 1221 2284 147 82 10 chr4 83413091 83413483 -72216637 + MTC LTR MaLR 1 420 -1 8 1221 688 290 66 56 chr4 83413483 83413502 -72216618 - L1M2 LINE L1 -1636 4507 4480 8 1221 3409 176 31 39 chr4 83413502 83414175 -72215945 - Lx5 LINE L1 -1 7049 6382 8 1221 688 290 66 56 chr4 83414175 83414527 -72215593 - L1M2 LINE L1 -1664 4479 4117 8 1221 198 0 0 0 chr4 83414871 83414893 -72215227 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1221 515 223 247 0 chr4 83414981 83415147 -72214973 - MTD LTR MaLR -5 414 208 8 1221 412 192 0 37 chr4 83415197 83415278 -72214842 - MTD LTR MaLR -343 78 1 8 1221 818 322 75 15 chr4 83415322 83415653 -72214467 + MTD LTR MaLR 49 399 -20 8 1221 430 279 68 28 chr4 83415717 83415894 -72214226 - L1M4c LINE L1 -564 5846 5663 8 1221 237 263 110 110 chr4 83415895 83416104 -72214016 + YREP_Mm Unknown Unknown 78 286 -1526 8 1221 480 262 38 45 chr4 83415988 83416120 -72214000 - ID_B1 SINE B4 0 224 94 8 1221 353 254 73 15 chr4 83416184 83416320 -72213800 + Lx6 LINE L1 7290 7433 -27 8 1221 23 33 0 0 chr4 83416350 83416380 -72213740 + AT_rich Low_complexity Low_complexity 1 30 0 8 1221 331 176 35 24 chr4 83416522 83416661 -72213459 - L1M4c LINE L1 -1648 4728 4589 8 1221 339 25 0 0 chr4 83416765 83416805 -72213315 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1221 705 270 177 31 chr4 83416827 83417467 -72212653 - L1M4c LINE L1 -2352 4024 3270 8 1221 467 176 8 48 chr4 83417467 83417592 -72212528 + Lx7 LINE L1 7577 7696 0 8 1221 705 263 177 30 chr4 83417592 83417707 -72212413 - L1M4c LINE L1 -3113 3269 3159 8 1221 1600 250 68 3 chr4 83417740 83418121 -72211999 + MTD LTR MaLR 1 406 -13 8 1221 611 321 5 5 chr4 83418287 83418481 -72211639 - Lx9 LINE L1 -985 6659 6466 9 1221 288 0 0 0 chr4 83418611 83418643 -72211477 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 1221 1178 280 34 15 chr4 83418656 83419127 -72210993 - Lx8 LINE L1 -167 7306 6827 9 1221 319 183 0 0 chr4 83419136 83419196 -72210924 + L1_Mur3 LINE L1 5646 5705 -175 9 1221 30 0 0 0 chr4 83419300 83419330 -72210790 + AT_rich Low_complexity Low_complexity 1 30 0 9 1221 240 35 0 0 chr4 83419361 83419390 -72210730 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 9 1221 420 20 0 0 chr4 83419494 83419543 -72210577 + (T)n Simple_repeat Simple_repeat 1 49 0 9 1221 302 255 137 7 chr4 83419555 83419701 -72210419 - L1M4c LINE L1 -4275 2109 1945 8 1221 1069 178 63 142 chr4 83419747 83420201 -72209919 - Lx7 LINE L1 -67 7629 7106 9 1221 1003 185 5 10 chr4 83420246 83420443 -72209677 - Lx7 LINE L1 -407 7289 7094 9 1221 657 160 163 16 chr4 83420442 83420626 -72209494 - Lx7 LINE L1 -1626 6070 5860 9 1221 21 36 0 0 chr4 83420667 83420695 -72209425 + AT_rich Low_complexity Low_complexity 1 28 0 9 1221 7290 172 55 57 chr4 83420696 83423646 -72206474 - Lx6 LINE L1 -53 7407 4467 9 1221 2951 132 226 95 chr4 83423627 83423952 -72206168 - Lx6 LINE L1 -1858 4022 3630 9 1221 384 78 29 59 chr4 83423952 83424020 -72206100 - RLTR15 LTR ERVK -293 66 1 9 1221 2951 132 226 95 chr4 83424020 83424637 -72205483 - Lx6 LINE L1 -1858 3629 2881 9 1221 325 295 62 35 chr4 83424642 83424786 -72205334 - L1M4c LINE L1 -4591 1793 1646 8 1221 1437 235 129 14 chr4 83424975 83425346 -72204774 - MTD LTR MaLR -5 414 1 9 1221 3786 219 35 88 chr4 83425346 83426419 -72203701 - MTD-int LTR MaLR 0 1258 243 9 1221 21 0 0 0 chr4 83426419 83426440 -72203680 + AT_rich Low_complexity Low_complexity 1 21 0 9 1221 3006 131 1112 1 chr4 83426440 83426537 -72203583 - Lx9 LINE L1 -193 7451 7441 9 1221 204 40 0 0 chr4 83426537 83426562 -72203558 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1221 3006 213 102 8 chr4 83426562 83427336 -72202784 - Lx9 LINE L1 -204 7440 6592 9 1221 709 233 153 48 chr4 83427338 83427586 -72202534 - MTD-int LTR MaLR -984 274 1 9 1221 1871 225 10 53 chr4 83427588 83428006 -72202114 - MTD LTR MaLR -2 417 18 9 1221 892 197 73 8 chr4 83428135 83428381 -72201739 - L1M2 LINE L1 -345 6525 6264 9 1221 197 83 28 0 chr4 83428484 83428520 -72201600 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 9 1221 249 276 37 19 chr4 83428593 83428700 -72201420 - L1M2 LINE L1 -878 5964 5856 9 1221 636 282 143 2 chr4 83428755 83429293 -72200827 - L1M2 LINE L1 -3364 3478 2855 9 1221 1368 172 25 36 chr4 83429302 83429579 -72200541 + RLTR46 LTR ERVK 42 315 -5 9 1221 331 280 83 17 chr4 83429586 83429706 -72200414 - L1M2 LINE L1 -3990 2860 2733 9 1221 1369 220 95 9 chr4 83429760 83430086 -72200034 - ORR1D1 LTR MaLR -5 369 16 9 1221 3562 72 8 4 chr4 83430130 83430605 -72199515 - L1_Mus3 LINE L1 -5 6633 6157 9 1221 242 68 45 0 chr4 83430736 83430780 -72199340 + (TTATA)n Simple_repeat Simple_repeat 5 50 0 9 1221 243 182 30 15 chr4 83430787 83430854 -72199266 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 9 1221 563 195 340 13 chr4 83431118 83431274 -72198846 - B3 SINE B2 -7 209 3 9 1221 404 334 106 7 chr4 83431281 83431702 -72198418 - L1M2 LINE L1 -4252 2597 1766 9 1221 269 321 28 19 chr4 83432641 83432749 -72197371 + L2c LINE L2 3278 3386 -1 9 1221 705 24 0 0 chr4 83434193 83434276 -72195844 + (TC)n Simple_repeat Simple_repeat 1 83 0 9 1221 21 71 0 0 chr4 83434394 83434436 -72195684 + AT_rich Low_complexity Low_complexity 1 42 0 9 1221 185 83 0 27 chr4 83434592 83434629 -72195491 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 9 1221 795 257 91 26 chr4 83434652 83434916 -72195204 - Lx7 LINE L1 -393 7303 7023 9 1221 22 0 0 0 chr4 83435009 83435031 -72195089 + AT_rich Low_complexity Low_complexity 1 22 0 9 1221 24 0 0 0 chr4 83435065 83435089 -72195031 + AT_rich Low_complexity Low_complexity 1 24 0 9 1221 21 0 0 0 chr4 83435282 83435303 -72194817 + AT_rich Low_complexity Low_complexity 1 21 0 9 1221 1588 222 85 28 chr4 83435338 83435727 -72194393 - MTD LTR MaLR -8 411 1 9 1221 234 254 0 0 chr4 83436183 83436238 -72193882 + B3A SINE B2 1 55 -143 9 1221 27 49 0 0 chr4 83436315 83436356 -72193764 + AT_rich Low_complexity Low_complexity 1 41 0 9 1221 31 26 0 0 chr4 83436404 83436442 -72193678 + AT_rich Low_complexity Low_complexity 1 38 0 9 1221 260 169 0 27 chr4 83436571 83436644 -72193476 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 9 1221 204 235 0 0 chr4 83436674 83436725 -72193395 + (TATG)n Simple_repeat Simple_repeat 4 54 0 9 1221 403 202 45 56 chr4 83436704 83436882 -72193238 + (TTTG)n Simple_repeat Simple_repeat 3 178 0 9 1221 572 181 126 0 chr4 83436924 83437051 -72193069 - B1_Mus1 SINE Alu -1 147 5 9 1221 180 200 0 0 chr4 83438910 83438950 -72191170 + (ACTG)n Simple_repeat Simple_repeat 4 43 0 9 1221 489 252 41 0 chr4 83438950 83439073 -72191047 - B1F SINE Alu -10 139 12 9 1221 231 221 0 29 chr4 83439217 83439287 -72190833 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1221 559 328 113 49 chr4 83439291 83439557 -72190563 - B4A SINE B4 -2 290 8 9 1221 279 0 0 0 chr4 83439604 83439635 -72190485 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1221 3542 74 146 2 chr4 83439683 83440210 -72189910 + Lx3_Mus LINE L1 6407 7009 0 9 1221 21 82 0 0 chr4 83442258 83442307 -72187813 + AT_rich Low_complexity Low_complexity 1 49 0 9 1221 339 169 0 0 chr4 83442799 83442870 -72187250 + (CTG)n Simple_repeat Simple_repeat 1 71 0 9 1221 245 377 69 0 chr4 83442940 83443070 -72187050 - MIRb SINE MIR -95 173 35 9 1221 898 237 146 93 chr4 83443342 83443939 -72186181 - L1MA5 LINE L1 -9 6291 5668 9 1221 265 299 105 29 chr4 83447561 83447771 -72182349 + MIRc SINE MIR 15 240 -28 9 1221 288 77 0 0 chr4 83448204 83448243 -72181877 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1221 531 232 167 0 chr4 83449055 83449193 -72180927 + B4 SINE B4 1 161 -131 9 1221 233 267 176 115 chr4 83449193 83449237 -72180883 + B3A SINE B2 1 193 -5 9 1221 911 194 11 53 chr4 83449442 83449632 -72180488 + B3A SINE B2 1 182 -16 9 1221 257 203 26 26 chr4 83449680 83449756 -72180364 - Lx8 LINE L1 -2 7471 7396 9 1221 581 336 7 0 chr4 83449884 83450027 -72180093 + ID_B1 SINE B4 45 188 -36 9 1221 468 0 0 0 chr4 83450029 83450081 -72180039 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1221 393 22 0 0 chr4 83450081 83450126 -72179994 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1221 3028 131 173 12 chr4 83450451 83451045 -72179075 - RMER6C LTR ERVK 0 690 1 9 1221 615 234 48 17 chr4 83451123 83451432 -72178688 + L1M3 LINE L1 5150 5480 -832 9 1221 973 264 73 20 chr4 83451443 83451734 -72178386 + L1_Mur3 LINE L1 3931 4231 -1649 9 1221 2589 85 31 13 chr4 83451734 83452126 -72177994 - Lx LINE L1 0 6654 6256 9 1221 973 264 73 20 chr4 83452126 83452380 -72177740 + L1_Mur3 LINE L1 4232 4505 -1375 9 1221 632 221 36 7 chr4 83452432 83452569 -72177551 + B1_Mur1 SINE Alu 2 142 -7 9 1221 22 0 0 0 chr4 83452569 83452591 -72177529 + AT_rich Low_complexity Low_complexity 1 22 0 9 1221 549 292 139 12 chr4 83452591 83452764 -72177356 + B3A SINE B2 3 197 -1 9 1221 980 280 124 27 chr4 83452768 83453573 -72176547 + L1M2 LINE L1 4538 5422 -425 9 1221 550 303 139 19 chr4 83453578 83453837 -72176283 + B4 SINE B4 1 290 -2 9 1221 29 28 0 0 chr4 83453869 83453905 -72176215 + AT_rich Low_complexity Low_complexity 1 36 0 9 1221 225 206 39 67 chr4 83453914 83454018 -72176102 + L1MCa LINE L1 1863 1963 -4545 9 1221 1066 302 139 6 chr4 83454043 83454552 -72175568 - Lx8 LINE L1 -471 7002 6426 9 1221 611 57 11 0 chr4 83454632 83454720 -72175400 + (TG)n Simple_repeat Simple_repeat 2 90 0 9 1221 477 308 0 8 chr4 83454739 83454873 -72175247 + Lx8 LINE L1 6268 6400 -1073 9 1221 453 248 83 23 chr4 83455623 83455755 -72174365 - RMER15 LTR ERVL -126 449 310 9 1221 268 252 67 75 chr4 83455801 83455921 -72174199 - RMER15 LTR ERVL -446 129 11 9 1221 750 23 0 0 chr4 83456854 83456942 -72173178 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 9 1221 1158 51 0 0 chr4 83456942 83457079 -72173041 - B1_Mm SINE Alu -10 137 1 9 1221 446 204 9 0 chr4 83458518 83458631 -72171489 + (TA)n Simple_repeat Simple_repeat 2 115 0 9 1221 27 0 0 0 chr4 83458681 83458708 -72171412 + AT_rich Low_complexity Low_complexity 1 27 0 9 1221 307 310 40 33 chr4 83459093 83459243 -72170877 - L1MD1 LINE L1 -13 6229 6079 9 1221 393 255 117 29 chr4 83459295 83459594 -72170526 - L1MD1 LINE L1 -454 5905 5527 9 1221 1798 61 0 9 chr4 83460328 83460561 -72169559 - L1Md_F2 LINE L1 -16 6566 6336 9 1221 5954 45 1 0 chr4 83460561 83461375 -72168745 + L1Md_F2 LINE L1 5519 6333 -249 9 1221 253 341 28 49 chr4 83461616 83461758 -72168362 - MIRc SINE MIR -67 201 63 9 1221 180 0 0 0 chr4 83463411 83463431 -72166689 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1221 464 297 83 0 chr4 83463580 83463725 -72166395 - B4A SINE B4 -134 158 2 9 1221 259 326 33 85 chr4 83465039 83465250 -72164870 + L2a LINE L2 3205 3404 -22 9 1221 39 22 0 0 chr4 83466112 83466158 -72163962 + AT_rich Low_complexity Low_complexity 1 46 0 9 1221 219 396 43 0 chr4 83466790 83466929 -72163191 - L2 LINE L2 -1308 2111 1967 9 1221 298 254 74 17 chr4 83467136 83467455 -72162665 - L1MD2 LINE L1 -3842 2702 2363 9 1221 491 0 0 17 chr4 83467483 83467543 -72162577 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 9 1221 2497 191 109 11 chr4 83467630 83468291 -72161829 - Lx9 LINE L1 0 7644 6919 9 1221 319 381 101 48 chr4 83468409 83468767 -72161353 - L1MD2 LINE L1 -5656 891 515 9 1221 180 0 0 0 chr4 83471154 83471174 -72158946 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1221 957 202 64 0 chr4 83471551 83471754 -72158366 + B3 SINE B2 1 216 0 9 1221 744 264 44 39 chr4 83473180 83473385 -72156735 + B3 SINE B2 1 206 -10 9 1221 252 0 0 0 chr4 83473526 83473554 -72156566 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1221 2347 208 53 101 chr4 83473799 83474573 -72155547 - Lx7 LINE L1 0 7696 6960 9 1221 498 281 97 81 chr4 83474600 83474803 -72155317 + L1MB5 LINE L1 4954 5186 -960 9 1221 224 0 65 0 chr4 83474803 83474834 -72155286 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1221 498 281 97 81 chr4 83474834 83474973 -72155147 + L1MB5 LINE L1 5187 5306 -840 9 1221 1706 77 0 4 chr4 83474973 83475209 -72154911 - L1_Mus4 LINE L1 -5 6631 6397 9 1221 498 281 97 81 chr4 83475209 83475287 -72154833 + L1MB5 LINE L1 5307 5382 -764 9 1221 691 272 92 102 chr4 83475325 83475571 -72154549 + L1MB5 LINE L1 5589 5822 -352 9 1221 788 224 50 25 chr4 83475571 83475772 -72154348 - B3 SINE B2 -9 207 2 9 1221 691 273 97 102 chr4 83475772 83476103 -72154017 + L1MB5 LINE L1 5819 6175 -5 9 1221 291 389 12 31 chr4 83476186 83476348 -72153772 + MIR3 SINE MIR 41 199 -9 9 1221 247 294 101 40 chr4 83480137 83480286 -72149834 + Charlie21a DNA MER1_type 240 397 -816 9 1221 297 140 0 0 chr4 83480644 83480701 -72149419 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1221 1080 279 14 24 chr4 83480733 83481023 -72149097 - B4A SINE B4 0 292 6 1 1221 29 28 0 0 chr4 83481041 83481077 -72149043 + AT_rich Low_complexity Low_complexity 1 36 0 1 1221 326 341 51 0 chr4 83481085 83481223 -72148897 + RSINE1 SINE B4 3 147 -18 1 1221 468 0 0 0 chr4 83481246 83481298 -72148822 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1221 26 74 0 0 chr4 83481449 83481503 -72148617 + AT_rich Low_complexity Low_complexity 1 54 0 1 1221 357 264 46 28 chr4 83482733 83482842 -72147278 + RSINE1 SINE B4 53 163 -2 1 1221 23 0 0 0 chr4 83483024 83483047 -72147073 + AT_rich Low_complexity Low_complexity 1 23 0 1 1221 22 70 0 0 chr4 83483922 83483965 -72146155 + AT_rich Low_complexity Low_complexity 1 43 0 1 1221 518 220 17 6 chr4 83483981 83484159 -72145961 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1221 295 227 93 0 chr4 83484430 83484505 -72145615 - MTE2b LTR MaLR -295 84 3 1 1221 510 290 140 19 chr4 83484544 83484801 -72145319 + B4 SINE B4 1 288 -4 1 1221 546 63 0 0 chr4 83484826 83484905 -72145215 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1221 694 263 138 39 chr4 83484980 83485285 -72144835 + MLT1B LTR MaLR 53 387 -3 1 1221 209 180 20 0 chr4 83486066 83486116 -72144004 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1221 289 358 19 6 chr4 83486121 83486281 -72143839 - RSINE1 SINE B4 0 165 4 1 1221 372 263 85 73 chr4 83486368 83486614 -72143506 - L1MB2 LINE L1 -102 6305 6057 1 1221 891 236 33 19 chr4 83486669 83486881 -72143239 - B3 SINE B2 -1 215 1 1 1221 415 157 369 10 chr4 83486904 83487007 -72143113 - B1_Mur1 SINE Alu -7 142 3 1 1221 458 286 29 17 chr4 83487009 83487207 -72142913 - L1MB2 LINE L1 -382 6037 5837 1 1221 1914 52 0 53 chr4 83487213 83487475 -72142645 - L1Md_F2 LINE L1 -12 6570 6323 1 1221 925 78 0 0 chr4 83487475 83487604 -72142516 + L1Md_F2 LINE L1 6123 6251 -331 1 1221 306 236 0 58 chr4 83487713 83487902 -72142218 + (CTG)n Simple_repeat Simple_repeat 2 179 0 1 1221 215 258 0 58 chr4 83488001 83488190 -72141930 + (CTG)n Simple_repeat Simple_repeat 2 179 0 1 1221 263 242 0 58 chr4 83488209 83488398 -72141722 + (CTG)n Simple_repeat Simple_repeat 2 179 0 1 1221 229 253 0 60 chr4 83488449 83488634 -72141486 + (CTG)n Simple_repeat Simple_repeat 3 176 0 1 1221 227 245 0 58 chr4 83488753 83488926 -72141194 + (CTG)n Simple_repeat Simple_repeat 2 164 0 1 1221 584 287 87 35 chr4 83488992 83489550 -72140570 - L1MB2 LINE L1 -698 5721 5124 1 1221 1687 269 180 29 chr4 83489638 83490933 -72139187 - L1MB2 LINE L1 -4871 1513 24 1 1221 643 232 60 35 chr4 83491076 83491122 -72138998 - B3 SINE B2 -7 209 159 1 1221 234 0 0 0 chr4 83491122 83491148 -72138972 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1221 643 232 60 35 chr4 83491148 83491302 -72138818 - B3 SINE B2 -58 158 4 1 1222 375 121 0 0 chr4 83493564 83493622 -72136498 + (CAA)n Simple_repeat Simple_repeat 1 58 0 1 1222 22 0 0 0 chr4 83494357 83494379 -72135741 + AT_rich Low_complexity Low_complexity 1 22 0 1 1222 248 224 17 17 chr4 83494389 83494448 -72135672 + ID4_ SINE ID 19 77 -6 1 1222 180 0 0 0 chr4 83495234 83495254 -72134866 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1222 215 321 0 0 chr4 83495256 83495309 -72134811 + L2a LINE L2 3346 3398 -28 1 1222 316 306 72 32 chr4 83495321 83495446 -72134674 + L1MA7 LINE L1 5166 5295 -848 1 1222 605 297 28 0 chr4 83495473 83495618 -72134502 + B3A SINE B2 34 182 -16 1 1222 477 0 0 0 chr4 83495622 83495675 -72134445 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1222 245 238 0 0 chr4 83495692 83495755 -72134365 + L1MA7 LINE L1 5301 5363 -780 1 1222 251 266 121 71 chr4 83495809 83495991 -72134129 + Lx8 LINE L1 7282 7472 -1 1 1222 509 68 14 0 chr4 83496068 83496142 -72133978 + (TCTA)n Simple_repeat Simple_repeat 1 75 0 1 1222 1969 269 64 18 chr4 83496149 83496342 -72133778 + L1MA7 LINE L1 5395 5596 -695 1 1222 297 0 0 0 chr4 83496342 83496375 -72133745 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1222 1969 269 64 18 chr4 83496375 83497026 -72133094 + L1MA7 LINE L1 5597 6277 -14 1 1222 720 352 50 22 chr4 83498470 83498525 -72131595 + MER58B DNA MER1_type 16 71 -270 1 1222 1968 165 42 6 chr4 83498525 83498879 -72131241 - ORR1B2 LTR MaLR 0 367 1 1 1222 720 352 50 22 chr4 83498879 83499140 -72130980 + MER58B DNA MER1_type 72 341 0 1 1222 324 0 0 0 chr4 83499791 83499827 -72130293 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1222 337 339 70 18 chr4 83499829 83500000 -72130120 + Tigger5 DNA MER2_type 1 180 -2226 1 1222 242 176 98 0 chr4 83500000 83500051 -72130069 + Tigger5 DNA MER2_type 181 236 -2170 1 1222 315 71 0 0 chr4 83500148 83500190 -72129930 + (TATG)n Simple_repeat Simple_repeat 4 45 0 2 1222 392 336 0 9 chr4 83500384 83500492 -72129628 - PB1D10 SINE Alu -8 109 3 3 1222 1134 267 11 4 chr4 83500974 83501241 -72128879 + B4 SINE B4 1 269 -23 4 1222 414 0 0 0 chr4 83501241 83501287 -72128833 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1222 1786 222 21 21 chr4 83501431 83501909 -72128211 - RCHARR1 DNA MER1_type 0 974 497 6 1222 33 25 0 0 chr4 83501912 83501952 -72128168 + AT_rich Low_complexity Low_complexity 1 40 0 7 1222 1135 209 14 0 chr4 83501952 83502162 -72127958 - B3 SINE B2 -3 213 1 8 1222 362 281 98 8 chr4 83502218 83502340 -72127780 - RCHARR1 DNA MER1_type -834 140 8 6 1222 198 308 111 48 chr4 83503351 83503559 -72126561 + MIRb SINE MIR 47 267 -1 9 1222 1271 263 96 20 chr4 83505182 83505679 -72124441 + Lx8 LINE L1 6917 7473 0 1 1222 246 192 0 42 chr4 83506952 83507072 -72123048 + CT-rich Low_complexity Low_complexity 1 114 0 1 1222 369 0 0 0 chr4 83507593 83507634 -72122486 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1222 643 302 102 32 chr4 83507651 83508052 -72122068 + L1MA7 LINE L1 5617 6045 -246 1 1222 616 101 15 23 chr4 83509384 83509516 -72120604 + (TA)n Simple_repeat Simple_repeat 2 132 0 1 1222 201 39 0 0 chr4 83511197 83511223 -72118897 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1222 192 158 0 0 chr4 83512047 83512085 -72118035 + T-rich Low_complexity Low_complexity 2 39 0 1 1222 306 0 0 0 chr4 83512339 83512373 -72117747 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1222 299 318 0 0 chr4 83513638 83513723 -72116397 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1222 667 295 38 31 chr4 83513978 83514268 -72115852 - B4 SINE B4 0 292 1 1 1222 186 227 0 0 chr4 83514298 83514342 -72115778 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1222 796 165 57 12 chr4 83514608 83514795 -72115325 - URR1A DNA MER1_type -14 212 1 2 1222 3779 78 26 17 chr4 83515517 83516049 -72114071 + Lx3A LINE L1 6444 6980 -1 2 1222 21 0 0 0 chr4 83516049 83516070 -72114050 + AT_rich Low_complexity Low_complexity 1 21 0 2 1222 2248 74 7 0 chr4 83517436 83517732 -72112388 - Lx3_Mus LINE L1 0 7009 6712 2 1222 833 142 0 28 chr4 83518457 83518602 -72111518 + B1_Mur4 SINE Alu 1 141 -9 2 1222 919 290 101 78 chr4 83518617 83518914 -72111206 - L1MB7 LINE L1 -5 6179 5882 2 1222 622 168 75 68 chr4 83518914 83519061 -72111059 - B1_Mus1 SINE Alu 0 148 1 2 1222 919 290 101 78 chr4 83519061 83519504 -72110616 - L1MB7 LINE L1 -303 5881 5422 2 1222 235 183 42 12 chr4 83519546 83519604 -72110516 - PB1D7 SINE Alu -1 148 73 2 1222 2514 272 91 58 chr4 83519649 83521388 -72108732 - L1MB7 LINE L1 -778 5368 3572 2 1222 22 70 0 0 chr4 83521587 83521630 -72108490 + AT_rich Low_complexity Low_complexity 1 43 0 2 1222 23 54 0 0 chr4 83521640 83521677 -72108443 + AT_rich Low_complexity Low_complexity 1 37 0 3 1222 2757 254 89 16 chr4 83522565 83523338 -72106782 + Lx8 LINE L1 6410 7239 -234 3 1222 1104 223 118 12 chr4 83523916 83524247 -72105873 + ORR1D2 LTR MaLR 3 368 -2 3 1222 296 284 21 10 chr4 83525275 83525371 -72104749 + MIRb SINE MIR 80 176 -92 3 1222 1297 154 9 5 chr4 83525758 83525980 -72104140 - URR1B DNA MER1_type -2 223 1 3 1222 3434 69 29 0 chr4 83526765 83527212 -72102908 - L1_Mus3 LINE L1 -3 6635 6176 3 1222 255 61 0 0 chr4 83527837 83527870 -72102250 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1222 243 0 0 0 chr4 83528237 83528264 -72101856 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1222 256 102 41 0 chr4 83528397 83528446 -72101674 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1222 237 65 0 0 chr4 83530452 83530483 -72099637 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1222 786 272 0 0 chr4 83530488 83530650 -72099470 - B3A SINE B2 -34 164 3 4 1222 322 286 93 19 chr4 83530838 83530945 -72099175 - PB1 SINE Alu -7 120 6 4 1222 265 346 58 49 chr4 83531712 83531937 -72098183 - LTR16B1 LTR ERVL -250 230 4 4 1222 397 252 191 0 chr4 83532133 83532264 -72097856 + RSINE1 SINE B4 10 165 0 4 1222 4012 124 2 2 chr4 83533471 83534070 -72096050 + L1_Mur2 LINE L1 4917 5515 -362 4 1222 243 0 0 0 chr4 83534806 83534833 -72095287 + (CCCCG)n Simple_repeat Simple_repeat 3 29 0 4 1222 215 154 26 0 chr4 83535127 83535166 -72094954 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 4 1222 525 16 0 0 chr4 83536506 83536568 -72093552 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1222 224 281 47 0 chr4 83536717 83536781 -72093339 + B1F SINE Alu 24 90 -59 4 1222 441 0 0 0 chr4 83537118 83537167 -72092953 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1222 280 233 0 0 chr4 83539471 83539531 -72090589 + tRNA-Ala-GCY_ tRNA tRNA 7 66 -9 5 1222 196 185 37 0 chr4 83539599 83539653 -72090467 + CT-rich Low_complexity Low_complexity 1 56 0 5 1222 553 315 41 0 chr4 83539653 83539799 -72090321 - RSINE1 SINE B4 -12 153 2 5 1222 763 259 118 13 chr4 83539799 83540286 -72089834 + L1M4 LINE L1 4892 5434 -744 5 1222 654 291 65 11 chr4 83540280 83540558 -72089562 + L1MA4 LINE L1 5486 5778 -513 5 1222 483 48 0 0 chr4 83540567 83540629 -72089491 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1222 352 268 16 24 chr4 83540655 83540781 -72089339 + ID_B1 SINE B4 91 215 -9 5 1222 1074 121 0 0 chr4 83540784 83541033 -72089087 + (GAA)n Simple_repeat Simple_repeat 1 249 0 5 1222 343 265 9 29 chr4 83541041 83541146 -72088974 + L1MA4 LINE L1 5836 5938 -362 5 1222 280 64 43 0 chr4 83541212 83541259 -72088861 + (CCCCCT)n Simple_repeat Simple_repeat 6 54 0 5 1222 652 303 34 57 chr4 83541446 83541869 -72088251 + RMER15 LTR ERVL 1 532 -43 5 1222 580 350 11 30 chr4 83541902 83542167 -72087953 + RMER15-int LTR ERVL 109 368 -4631 5 1222 868 312 97 13 chr4 83542438 83542902 -72087218 + RMER15-int LTR ERVL 716 1218 -3781 5 1222 870 171 7 7 chr4 83542938 83543085 -72087035 - B1_Mur4 SINE Alu -2 148 2 6 1222 621 213 18 0 chr4 83543091 83543255 -72086865 + (TA)n Simple_repeat Simple_repeat 2 168 0 6 1222 1235 329 44 23 chr4 83543255 83543775 -72086345 + RMER15-int LTR ERVL 1253 1783 -3216 5 1222 188 323 0 0 chr4 83544564 83544626 -72085494 - MIR3 SINE MIR -5 203 142 6 1222 654 100 0 0 chr4 83544679 83544779 -72085341 + (TCCC)n Simple_repeat Simple_repeat 3 102 0 6 1222 239 158 247 13 chr4 83545261 83545338 -72084782 - PB1D10 SINE Alu 0 117 23 6 1222 302 311 67 0 chr4 83545776 83545866 -72084254 + B4A SINE B4 6 101 -191 6 1222 309 238 0 0 chr4 83545869 83545970 -72084150 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 6 1222 251 326 142 15 chr4 83545996 83546130 -72083990 + B4 SINE B4 124 274 -18 6 1222 351 0 0 0 chr4 83546173 83546212 -72083908 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1222 237 65 0 0 chr4 83546213 83546244 -72083876 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1222 464 117 13 0 chr4 83546246 83546323 -72083797 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 6 1222 554 52 26 0 chr4 83546401 83546478 -72083642 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 7 1222 1031 109 208 47 chr4 83547060 83547252 -72082868 - URR1A DNA MER1_type -3 223 1 7 1222 967 343 79 38 chr4 83547409 83548066 -72082054 + MER21B LTR ERV1 98 781 -82 7 1222 391 237 43 36 chr4 83550901 83551041 -72079079 + RMER15 LTR ERVL 422 562 -13 7 1222 400 255 124 64 chr4 83551656 83551874 -72078246 - L1MB3 LINE L1 -18 6165 5935 7 1222 1030 305 59 17 chr4 83551902 83552259 -72077861 - MTE2b LTR MaLR 0 379 8 7 1222 373 164 40 40 chr4 83552392 83552468 -72077652 - L1M4 LINE L1 -549 5635 5560 7 1222 240 35 0 0 chr4 83555637 83555666 -72074454 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1222 24 0 0 0 chr4 83556266 83556290 -72073830 + AT_rich Low_complexity Low_complexity 1 24 0 7 1222 338 353 84 10 chr4 83556670 83556873 -72073247 + MLT1I LTR MaLR 194 411 0 7 1222 313 260 0 0 chr4 83558077 83558150 -72071970 + ID_B1 SINE B4 152 224 0 8 1222 315 0 0 0 chr4 83558158 83558193 -72071927 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1222 268 256 11 65 chr4 83558649 83558741 -72071379 + MER5A1 DNA MER1_type 37 123 -43 8 1222 408 274 16 173 chr4 83558807 83558873 -72071247 + B4 SINE B4 26 91 -201 8 1222 1161 56 7 0 chr4 83558873 83559017 -72071103 + B1_Mus2 SINE Alu 3 147 0 8 1222 408 274 16 173 chr4 83559017 83559135 -72070985 + B4 SINE B4 92 181 -111 8 1222 1253 231 165 51 chr4 83559131 83559787 -72070333 + MTD-int LTR MaLR 407 1258 0 8 1222 722 213 210 20 chr4 83559787 83560139 -72069981 + MTD LTR MaLR 1 419 0 8 1222 21 0 0 0 chr4 83561521 83561542 -72068578 + AT_rich Low_complexity Low_complexity 1 21 0 8 1222 302 215 12 48 chr4 83562207 83562290 -72067830 - ID4 SINE ID -2 81 2 8 1222 215 179 0 0 chr4 83562320 83562359 -72067761 - PB1 SINE Alu -10 117 79 8 1222 232 221 108 81 chr4 83562496 83562570 -72067550 - MLT1K LTR MaLR -83 282 207 8 1222 351 261 152 21 chr4 83565096 83565241 -72064879 - MLT1K LTR MaLR -413 182 19 8 1222 477 0 0 0 chr4 83565949 83566002 -72064118 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1222 325 44 20 91 chr4 83566270 83566369 -72063751 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 9 1222 282 360 72 49 chr4 83567581 83567967 -72062153 + L1MEg LINE L1 474 868 -5251 9 1222 1023 260 67 47 chr4 83567987 83568330 -72061790 - ORR1D2 LTR MaLR 0 370 21 9 1222 386 334 104 42 chr4 83568442 83568995 -72061125 + L1MEg LINE L1 1064 1684 -4541 9 1222 2055 250 48 34 chr4 83569563 83570054 -72060066 - MMAR1 DNA Mariner 0 1286 781 9 1222 1382 141 9 22 chr4 83570054 83570279 -72059841 - URR1A DNA MER1_type 0 226 5 9 1222 2055 250 48 34 chr4 83570279 83570407 -72059713 - MMAR1 DNA Mariner -506 780 659 9 1222 361 268 89 8 chr4 83570439 83570563 -72059557 - MMAR1 DNA Mariner -694 592 459 9 1222 1432 251 19 8 chr4 83570585 83570962 -72059158 - MMAR1 DNA Mariner -905 381 1 9 1222 247 288 171 56 chr4 83571525 83571776 -72058344 - MLT1J LTR MaLR -110 338 59 9 1222 9215 1 0 0 chr4 83572908 83574032 -72056088 - L1Md_A LINE L1 0 6582 5459 9 1222 5782 5 0 0 chr4 83574032 83574669 -72055451 + L1Md_A LINE L1 4816 5452 -431 9 1222 435 314 29 14 chr4 83575221 83575360 -72054760 - ID_B1 SINE B4 0 224 84 9 1222 233 70 0 44 chr4 83575417 83575462 -72054658 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 9 1222 270 340 118 13 chr4 83579098 83579250 -72050870 - MER20 DNA MER1_type -1 218 51 1 1222 306 115 0 0 chr4 83580532 83580584 -72049536 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1222 181 189 27 13 chr4 83580613 83580688 -72049432 + A-rich Low_complexity Low_complexity 2 77 0 1 1222 3102 241 22 11 chr4 83580699 83581414 -72048706 - Lx7 LINE L1 -375 7321 6599 1 1222 749 302 45 24 chr4 83581964 83582296 -72047824 + MER44A DNA MER2_type 1 339 0 1 1222 189 121 0 0 chr4 83582341 83582374 -72047746 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1222 219 88 0 0 chr4 83582441 83582475 -72047645 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1222 469 228 0 43 chr4 83582487 83582675 -72047445 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1222 441 306 157 0 chr4 83582706 83582853 -72047267 - B4A SINE B4 -1 291 122 1 1222 2271 216 35 20 chr4 83582854 83583463 -72046657 - RCHARR1 DNA MER1_type -63 911 294 1 1222 464 184 17 3 chr4 83583610 83583731 -72046389 - B1_Mur4 SINE Alu 0 120 1 1 1222 549 44 0 0 chr4 83585066 83585134 -72044986 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1222 315 0 0 0 chr4 83586050 83586085 -72044035 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1222 1019 169 32 78 chr4 83586243 83586461 -72043659 + B3 SINE B2 5 212 -4 1 1222 35 0 0 0 chr4 83587485 83587520 -72042600 + AT_rich Low_complexity Low_complexity 1 35 0 1 1222 432 0 0 0 chr4 83588515 83588563 -72041557 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1222 206 220 0 0 chr4 83589486 83589536 -72040584 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1222 270 0 0 0 chr4 83590326 83590356 -72039764 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1222 209 339 39 16 chr4 83590683 83590821 -72039299 + MIR SINE MIR 1 145 -63 1 1222 228 225 24 36 chr4 83591035 83591118 -72039002 + T-rich Low_complexity Low_complexity 4 85 0 1 1222 231 364 62 38 chr4 83591238 83591398 -72038722 - MIRb SINE MIR -34 234 71 1 1222 240 269 60 0 chr4 83591410 83591477 -72038643 - MER63D DNA AcHobo -679 382 312 1 1222 574 335 23 54 chr4 83595070 83595423 -72034697 - ORR1E LTR MaLR -9 350 9 1 1222 241 322 222 7 chr4 83595660 83595813 -72034307 + MIR SINE MIR 51 236 -26 1 1222 414 317 143 16 chr4 83597928 83598236 -72031884 + MLT1K LTR MaLR 186 532 -63 1 1222 2034 116 0 144 chr4 83598453 83598835 -72031285 - ORR1A2 LTR MaLR 0 327 1 1 1222 3846 202 14 64 chr4 83598971 83599861 -72030259 - Lx7 LINE L1 -146 7550 6706 1 1222 352 19 58 0 chr4 83600223 83600275 -72029845 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 1 1222 529 178 7 7 chr4 83600289 83600442 -72029678 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 1 1222 24 0 0 0 chr4 83600813 83600837 -72029283 + AT_rich Low_complexity Low_complexity 1 24 0 1 1222 483 250 47 31 chr4 83601299 83601427 -72028693 - B1F SINE Alu -19 130 1 1 1222 375 274 70 28 chr4 83602030 83602244 -72027876 + MER112 DNA MER1_type 29 251 -10 1 1222 225 316 0 71 chr4 83603531 83603616 -72026504 + MLT1H2 LTR MaLR 76 154 -335 1 1222 183 188 0 0 chr4 83603854 83603902 -72026218 + A-rich Low_complexity Low_complexity 1 48 0 1 1222 490 255 0 72 chr4 83604041 83604193 -72025927 - B3A SINE B2 -5 193 53 1 1222 519 247 65 24 chr4 83604366 83604536 -72025584 + L1MA9 LINE L1 6126 6302 -10 1 1222 36184 34 1 0 chr4 83604683 83610555 -72019565 + L1Md_T LINE L1 1 5589 -297 1 1222 9107 8 0 0 chr4 83610555 83611551 -72018569 + L1Md_T LINE L1 5590 6585 0 1 1222 930 276 106 16 chr4 83612331 83612749 -72017371 + MLT1C LTR MaLR 1 455 -12 1 1222 607 320 14 24 chr4 83612822 83613033 -72017087 - MIR SINE MIR -27 235 27 1 1222 26 30 0 0 chr4 83613457 83613490 -72016630 + AT_rich Low_complexity Low_complexity 1 33 0 1 1222 615 174 0 0 chr4 83613737 83613881 -72016239 + (TG)n Simple_repeat Simple_repeat 2 145 0 1 1222 262 291 118 38 chr4 83615003 83615189 -72014931 + MLT1K LTR MaLR 324 524 -71 1 1222 606 159 0 0 chr4 83615336 83615443 -72014677 + GA-rich Low_complexity Low_complexity 2 108 0 1 1222 306 0 0 0 chr4 83615643 83615677 -72014443 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1222 378 0 0 0 chr4 83616188 83616230 -72013890 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1222 228 182 0 0 chr4 83617074 83617118 -72013002 + GA-rich Low_complexity Low_complexity 3 46 0 1 1222 576 282 0 47 chr4 83617126 83617275 -72012845 - RSINE1 SINE B4 -15 150 9 1 1222 902 206 4 153 chr4 83619581 83619816 -72010304 + B3 SINE B2 17 216 0 1 1222 447 19 0 0 chr4 83621737 83621789 -72008331 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1222 203 135 54 0 chr4 83621812 83621849 -72008271 + A-rich Low_complexity Low_complexity 5 43 0 1 152 623 304 93 5 chr4 83623804 83624009 -72006111 + ID_B1 SINE B4 1 223 -1 1 1223 378 42 0 0 chr4 83624399 83624447 -72005673 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1223 342 0 0 0 chr4 83624447 83624484 -72005636 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1223 323 318 99 12 chr4 83625475 83625647 -72004473 + LTR33 LTR ERVL 325 511 -4 1 1223 1858 191 49 16 chr4 83626255 83626623 -72003497 + MTD LTR MaLR 2 381 -38 1 1223 866 83 14 0 chr4 83626814 83626959 -72003161 + (TCTCTG)n Simple_repeat Simple_repeat 4 150 0 1 1223 192 299 29 15 chr4 83627160 83627228 -72002892 + MIRm SINE MIR 102 170 -106 1 1223 480 250 48 66 chr4 83627478 83627598 -72002522 - Lx7 LINE L1 -358 7338 7219 1 1223 234 0 0 0 chr4 83627598 83627624 -72002496 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1223 480 250 48 66 chr4 83627624 83627670 -72002450 - Lx7 LINE L1 -478 7218 7175 1 1223 544 196 92 31 chr4 83627924 83628087 -72002033 + MTD LTR MaLR 247 419 0 1 1223 220 111 0 0 chr4 83628087 83628123 -72001997 + B4A SINE B4 41 76 -216 1 1223 189 94 0 0 chr4 83628287 83628319 -72001801 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1223 533 208 6 0 chr4 83628557 83628735 -72001385 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1223 703 303 33 83 chr4 83628757 83629051 -72001069 + ID_B1 SINE B4 8 292 0 1 1223 643 194 0 22 chr4 83629051 83629235 -72000885 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1223 731 196 0 5 chr4 83629275 83629683 -72000437 + (CA)n Simple_repeat Simple_repeat 1 406 0 1 1223 744 182 0 0 chr4 83629697 83629917 -72000203 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1223 517 317 86 62 chr4 83631506 83631787 -71998333 + ORR1E LTR MaLR 1 282 -77 1 1223 356 16 66 0 chr4 83631787 83631848 -71998272 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1223 517 317 86 62 chr4 83631848 83631902 -71998218 + ORR1E LTR MaLR 283 343 -16 1 1223 778 286 91 98 chr4 83631919 83632380 -71997740 + MLT1E LTR MaLR 142 599 -54 1 1223 257 0 0 29 chr4 83632574 83632608 -71997512 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1223 231 275 101 98 chr4 83633527 83633728 -71996392 + MIRm SINE MIR 3 214 -54 1 1223 237 65 0 0 chr4 83634675 83634706 -71995414 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1223 231 306 24 0 chr4 83634926 83635011 -71995109 + (TCCA)n Simple_repeat Simple_repeat 1 87 0 1 1223 959 147 130 79 chr4 83635372 83635587 -71994533 - URR1A DNA MER1_type 0 226 1 1 1223 243 378 11 11 chr4 83636993 83637175 -71992945 - Tigger14a DNA MER2_type -4 320 139 1 1223 186 333 0 16 chr4 83637906 83637967 -71992153 + L2c LINE L2 3286 3345 -42 1 1223 204 178 0 43 chr4 83638076 83638123 -71991997 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 1 1223 1146 62 0 14 chr4 83638388 83638525 -71991595 + B1_Mm SINE Alu 1 136 -11 1 1223 218 0 45 45 chr4 83638525 83638569 -71991551 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1223 510 17 0 0 chr4 83638847 83638906 -71991214 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1223 359 333 11 0 chr4 83640858 83640945 -71989175 - B4A SINE B4 -202 90 3 1 1223 619 180 111 11 chr4 83640965 83641145 -71988975 - Lx9 LINE L1 0 7644 7447 1 1223 3313 169 153 54 chr4 83641178 83641955 -71988165 - Lx4B LINE L1 -616 6442 5589 1 1223 2216 176 195 25 chr4 83641960 83642483 -71987637 + Lx4B LINE L1 6440 7051 -7 1 1223 250 377 81 33 chr4 83643379 83643590 -71986530 + MER102a DNA MER1_type 93 313 -17 1 1223 384 22 0 0 chr4 83643609 83643654 -71986466 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1223 207 139 0 0 chr4 83644005 83644041 -71986079 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1223 1047 330 133 20 chr4 83644128 83644625 -71985495 + MLT1F1 LTR MaLR 3 555 -14 1 1223 181 156 31 0 chr4 83645423 83645455 -71984665 - MIRm SINE MIR -206 70 38 1 1223 386 232 9 0 chr4 83645724 83645836 -71984284 + GA-rich Low_complexity Low_complexity 3 115 0 1 1223 585 305 18 32 chr4 83645989 83646241 -71983879 - MER44A DNA MER2_type 0 339 94 1 1223 387 0 0 0 chr4 83646650 83646693 -71983427 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1223 261 303 91 0 chr4 83648693 83648782 -71981338 + ID2 SINE ID 4 100 -52 1 1223 1959 211 98 24 chr4 83649008 83649518 -71980602 - Lx9 LINE L1 0 7644 7097 1 1223 224 308 40 101 chr4 83650170 83650318 -71979802 + L2a LINE L2 3280 3418 -8 1 1223 888 303 22 16 chr4 83651627 83651949 -71978171 - L1M2 LINE L1 -633 5667 5344 1 1223 229 246 43 14 chr4 83651985 83652055 -71978065 - ID SINE ID -137 87 16 1 1223 347 306 185 0 chr4 83652112 83652344 -71977776 - L1M2 LINE L1 -890 5253 4979 1 1223 855 162 7 22 chr4 83652698 83652837 -71977283 - B1_Mur2 SINE Alu -1 148 12 1 1223 558 250 21 123 chr4 83652837 83652885 -71977235 - ID_B1 SINE B4 -1 223 56 1 1223 868 248 128 61 chr4 83653361 83653657 -71976463 - MTEa LTR MaLR -63 316 1 1 1223 1544 231 45 20 chr4 83655038 83655396 -71974724 - MTD LTR MaLR 0 419 53 1 1223 253 346 121 40 chr4 83658219 83658405 -71971715 + MIRb SINE MIR 33 238 -30 1 1223 2806 134 2 2 chr4 83658460 83658870 -71971250 + MTC LTR MaLR 1 410 -11 1 1223 253 330 66 0 chr4 83659978 83660084 -71970036 + L1ME2 LINE L1 5526 5638 -526 1 1223 379 318 123 34 chr4 83660124 83660531 -71969589 + L1ME2 LINE L1 5710 6152 -292 1 1223 1051 263 58 25 chr4 83660550 83660969 -71969151 - MT2A LTR ERVL 0 601 2 2 1223 958 281 34 11 chr4 83661021 83661284 -71968836 - B4 SINE B4 -10 282 14 2 1223 648 244 111 23 chr4 83661315 83661487 -71968633 + RMER30 DNA MER1_type 11 197 -5 2 1223 423 56 0 0 chr4 83662293 83662347 -71967773 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1223 276 53 0 0 chr4 83662354 83662392 -71967728 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1223 399 220 88 0 chr4 83662395 83662486 -71967634 - B1F SINE Alu -47 102 4 2 1223 309 333 77 0 chr4 83663406 83663523 -71966597 + MIRb SINE MIR 32 157 -111 2 1223 250 387 85 25 chr4 83663536 83663772 -71966348 - MLT1J2 LTR MaLR 0 448 199 2 1223 371 280 11 0 chr4 83663772 83663865 -71966255 - LTR40a LTR ERVL -425 94 1 2 1223 302 226 0 0 chr4 83663867 83663920 -71966200 + MER63D DNA AcHobo 313 365 -696 2 1223 248 53 26 0 chr4 83664727 83664765 -71965355 + (CCA)n Simple_repeat Simple_repeat 2 40 0 2 1223 210 219 0 0 chr4 83665688 83665729 -71964391 + CT-rich Low_complexity Low_complexity 1 41 0 2 1223 216 256 191 46 chr4 83666281 83666412 -71963708 - MIRb SINE MIR -28 240 91 2 1223 188 184 132 0 chr4 83666381 83666419 -71963701 - MIRm SINE MIR -150 126 84 2 1223 585 96 0 0 chr4 83667036 83667130 -71962990 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 1223 284 247 78 53 chr4 83667130 83667264 -71962856 + L1MA8 LINE L1 5801 5939 -250 2 1223 279 225 99 0 chr4 83667476 83667547 -71962573 + Lx8 LINE L1 7394 7471 -2 2 1223 1214 264 41 31 chr4 83667634 83668024 -71962096 - MLT2D LTR ERVL -20 394 1 2 1223 199 395 45 13 chr4 83668037 83668191 -71961929 - MIRb SINE MIR -76 192 34 2 1223 1034 103 13 20 chr4 83669716 83669865 -71960255 + B1_Mur4 SINE Alu 2 149 -1 2 1223 402 21 0 0 chr4 83669866 83669913 -71960207 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 1223 454 254 9 9 chr4 83670052 83670167 -71959953 - PB1D10 SINE Alu 0 117 3 2 1223 215 326 201 9 chr4 83671079 83671308 -71958812 + L2a LINE L2 2804 3076 -343 2 1223 198 323 260 0 chr4 83671387 83671579 -71958541 + L2a LINE L2 3185 3426 0 2 1223 369 0 0 0 chr4 83673460 83673501 -71956619 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1223 344 343 74 6 chr4 83673683 83673859 -71956261 + MER5A DNA MER1_type 1 188 -1 2 1223 261 0 0 0 chr4 83675585 83675614 -71954506 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1223 456 19 0 0 chr4 83676683 83676736 -71953384 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1223 411 78 0 0 chr4 83676738 83676802 -71953318 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 2 1223 378 0 0 0 chr4 83677687 83677729 -71952391 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1223 26 64 0 0 chr4 83678848 83678895 -71951225 + AT_rich Low_complexity Low_complexity 1 47 0 2 1223 188 225 97 14 chr4 83679790 83679862 -71950258 + L2a LINE L2 3348 3425 -1 2 1223 515 303 25 80 chr4 83679978 83680179 -71949941 - B3A SINE B2 -8 190 1 2 1223 949 170 10 25 chr4 83680227 83680426 -71949694 - Lx LINE L1 -3 6651 6456 2 1223 220 55 17 68 chr4 83680579 83680638 -71949482 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1223 1531 174 107 6 chr4 83680746 83681082 -71949038 - ORR1B1 LTR MaLR -24 370 1 2 1223 241 192 0 19 chr4 83681884 83681937 -71948183 + GA-rich Low_complexity Low_complexity 2 53 0 2 1223 337 20 20 20 chr4 83681949 83682000 -71948120 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1223 205 246 16 0 chr4 83683163 83683224 -71946896 - L2a LINE L2 -256 3170 3109 2 1223 285 358 61 6 chr4 83683609 83683789 -71946331 - MLT1J LTR MaLR -322 190 1 2 1223 504 68 0 0 chr4 83685217 83685290 -71944830 + (CAG)n Simple_repeat Simple_repeat 2 74 0 2 1223 230 145 94 24 chr4 83685870 83685955 -71944165 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 2 1223 871 261 72 93 chr4 83686515 83686903 -71943217 + MLT1B LTR MaLR 11 390 0 2 1223 279 266 94 22 chr4 83687885 83688066 -71942054 + L1MC2 LINE L1 5167 5360 -786 2 1223 1239 233 65 65 chr4 83688094 83688448 -71941672 + ORR1E LTR MaLR 4 357 -2 2 1223 1154 276 92 27 chr4 83688512 83689110 -71941010 + L1MC2 LINE L1 5679 6337 -7 2 1223 279 237 17 0 chr4 83689121 83689180 -71940940 - ID4_ SINE ID -19 64 5 2 1223 743 271 59 20 chr4 83690337 83690642 -71939478 + L1_Mur3 LINE L1 906 1222 -6490 2 1223 231 342 78 26 chr4 83691502 83691694 -71938426 - MIR SINE MIR -14 248 47 2 1223 228 108 14 58 chr4 83691699 83691768 -71938352 + T-rich Low_complexity Low_complexity 2 67 0 2 1223 259 333 86 7 chr4 83691898 83692037 -71938083 + MIR SINE MIR 68 217 -45 2 1223 339 229 26 3 chr4 83691997 83692110 -71938010 - MIRc SINE MIR -15 193 77 2 1223 231 36 0 0 chr4 83693954 83693982 -71936138 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1223 1570 214 69 28 chr4 83694237 83694626 -71935494 - MTD LTR MaLR 0 419 15 2 1223 211 0 57 29 chr4 83694627 83694662 -71935458 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2 1223 552 227 117 56 chr4 83695536 83695732 -71934388 - B3 SINE B2 -7 209 2 2 1223 248 77 0 25 chr4 83696893 83696933 -71933187 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1223 228 233 9 64 chr4 83698471 83698581 -71931539 + T-rich Low_complexity Low_complexity 5 108 0 2 1223 524 301 0 22 chr4 83698595 83698734 -71931386 - RSINE1 SINE B4 -3 162 27 2 1223 439 268 32 90 chr4 83698815 83698971 -71931149 - RSINE1 SINE B4 -17 148 2 2 1223 31 44 0 0 chr4 83699782 83699827 -71930293 + AT_rich Low_complexity Low_complexity 1 45 0 2 1223 414 225 9 18 chr4 83699831 83699944 -71930176 - Lx7 LINE L1 0 7696 7585 2 1223 333 0 0 0 chr4 83699948 83699985 -71930135 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1223 1900 248 73 34 chr4 83700000 83700895 -71929225 - Lx7 LINE L1 -339 7357 6395 2 1223 591 53 0 0 chr4 83700895 83700970 -71929150 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 1223 1732 273 99 86 chr4 83700970 83701092 -71929028 - Lx7 LINE L1 -1066 6394 6280 2 1223 675 125 0 9 chr4 83701092 83701197 -71928923 + B1_Mur4 SINE Alu 20 123 -27 2 1223 688 212 90 12 chr4 83701197 83701364 -71928756 - Lx7 LINE L1 -1425 6271 6092 2 1223 24 32 0 0 chr4 83701442 83701473 -71928647 + AT_rich Low_complexity Low_complexity 1 31 0 2 1223 210 180 0 0 chr4 83701640 83701701 -71928419 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1223 490 312 25 79 chr4 83701785 83702025 -71928095 - B4A SINE B4 -6 286 60 2 1223 261 262 0 15 chr4 83703177 83703243 -71926877 + MLT1L LTR MaLR 122 186 -424 2 1223 249 315 53 53 chr4 83703354 83703505 -71926615 + MLT1L LTR MaLR 330 480 -130 2 1223 330 26 0 0 chr4 83704349 83704388 -71925732 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1223 784 186 79 28 chr4 83704389 83704566 -71925554 - B3 SINE B2 -30 186 1 2 1223 1084 213 130 3 chr4 83704572 83704735 -71925385 + Lx9 LINE L1 7314 7476 -168 2 1223 180 77 0 0 chr4 83704735 83704761 -71925359 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1223 1084 213 130 3 chr4 83704761 83704889 -71925231 + Lx9 LINE L1 7477 7641 -3 2 1223 517 200 37 37 chr4 83704907 83705016 -71925104 - Lx8 LINE L1 -213 7260 7152 2 1223 525 212 45 15 chr4 83705419 83705553 -71924567 - MamRep564 Unknown Unknown -137 220 83 2 1223 2149 152 60 8 chr4 83705949 83706347 -71923773 + MTC LTR MaLR 1 419 -2 2 1223 206 233 0 23 chr4 83706813 83706857 -71923263 + polypurine Low_complexity Low_complexity 1 43 0 2 1223 225 65 0 0 chr4 83707563 83707594 -71922526 + (TCTCCC)n Simple_repeat Simple_repeat 4 34 0 2 1223 210 91 0 0 chr4 83707617 83707650 -71922470 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1223 898 194 97 28 chr4 83708884 83709101 -71921019 - ORR1B1 LTR MaLR -162 232 1 2 1223 218 173 68 0 chr4 83712680 83712734 -71917386 - MIRm SINE MIR -17 259 194 2 1223 848 268 223 3 chr4 83712896 83713277 -71916843 + Lx8 LINE L1 6859 7323 -150 2 1223 279 298 98 37 chr4 83713247 83713411 -71916709 + RMER1C Other Other 1166 1339 -3 2 1223 297 0 0 0 chr4 83714454 83714487 -71915633 + (CAA)n Simple_repeat Simple_repeat 3 35 0 2 1223 34 42 0 0 chr4 83715205 83715253 -71914867 + AT_rich Low_complexity Low_complexity 1 48 0 2 1223 192 217 0 0 chr4 83716560 83716606 -71913514 + GA-rich Low_complexity Low_complexity 1 46 0 2 1223 29 0 0 0 chr4 83717987 83718016 -71912104 + AT_rich Low_complexity Low_complexity 1 29 0 2 1223 212 189 94 0 chr4 83720337 83720390 -71909730 + MIRm SINE MIR 219 276 0 2 1223 317 287 182 4 chr4 83720545 83720760 -71909360 + MIRb SINE MIR 16 261 -1 2 1223 196 333 67 0 chr4 83721001 83721091 -71909029 + MIRb SINE MIR 102 197 -71 2 1223 697 285 37 144 chr4 83722080 83722585 -71907535 + RMER20B LTR ERVK 30 530 -97 2 1223 711 262 43 25 chr4 83723577 83723812 -71906308 + RMER15 LTR ERVL 337 575 0 2 1223 676 259 114 84 chr4 83726800 83727099 -71903021 - MLT1A0 LTR MaLR -45 320 13 2 1223 186 43 0 0 chr4 83728852 83728875 -71901245 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1223 512 298 87 0 chr4 83729524 83729742 -71900378 - L1M5 LINE L1 -434 5739 5503 2 1223 229 322 0 0 chr4 83729960 83730019 -71900101 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1223 1093 282 45 51 chr4 83730197 83730463 -71899657 - Lx8 LINE L1 -127 7346 7072 2 1223 513 71 0 0 chr4 83730463 83730533 -71899587 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1223 1093 282 45 51 chr4 83730533 83730715 -71899405 - Lx8 LINE L1 -402 7071 6901 2 1223 282 253 49 25 chr4 83730738 83730819 -71899301 - B4 SINE B4 -198 94 12 2 1223 234 0 0 0 chr4 83730970 83730996 -71899124 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1223 530 272 6 71 chr4 83731004 83731174 -71898946 - Lx9 LINE L1 -463 7181 7023 2 1223 21 36 0 0 chr4 83731431 83731459 -71898661 + AT_rich Low_complexity Low_complexity 1 28 0 3 1223 1328 293 141 4 chr4 83731499 83732037 -71898083 + Lx9 LINE L1 6367 6978 -666 3 1223 604 289 123 28 chr4 83732127 83732581 -71897539 - L1M5 LINE L1 -1024 5122 4618 2 1223 252 286 12 12 chr4 83732648 83732733 -71897387 - L1M5 LINE L1 -1536 4610 4526 2 1223 466 234 79 31 chr4 83732878 83733099 -71897021 - L1M5 LINE L1 -2147 3999 3776 2 1223 287 326 26 58 chr4 83734601 83734757 -71895363 - MIRb SINE MIR -1 267 117 3 1223 755 86 13 38 chr4 83735059 83735217 -71894903 + (TCTCTG)n Simple_repeat Simple_repeat 2 155 0 3 1223 185 324 174 28 chr4 83736414 83736592 -71893528 + L3b LINE CR1 243 446 -36 3 1223 298 315 78 98 chr4 83736703 83736907 -71893213 - MLT1K LTR MaLR 0 595 396 3 1223 185 278 222 0 chr4 83737063 83737135 -71892985 - L2a LINE L2 -28 3398 3311 3 1223 302 368 54 83 chr4 83739455 83739828 -71890292 + ORR1D2 LTR MaLR 9 370 0 3 1223 510 61 0 0 chr4 83739908 83739974 -71890146 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 3 1223 866 158 14 0 chr4 83739974 83740113 -71890007 - B1_Mur4 SINE Alu -9 141 1 3 1223 226 182 15 15 chr4 83740125 83740192 -71889928 + CT-rich Low_complexity Low_complexity 3 69 0 3 1223 320 309 180 19 chr4 83740250 83740511 -71889609 + L1MA9 LINE L1 5792 6094 -197 3 1223 263 28 0 27 chr4 83740622 83740659 -71889461 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 3 1223 1699 222 111 12 chr4 83740992 83741415 -71888705 - MLT1C LTR MaLR -1 466 2 3 1223 203 307 26 13 chr4 83741436 83741512 -71888608 - L3 LINE CR1 -311 4178 4102 3 1223 270 257 185 68 chr4 83742413 83742559 -71887561 - MLT1A LTR MaLR 0 374 212 3 1223 598 294 125 59 chr4 83743076 83743467 -71886653 - MER97a DNA MER1_type? -13 881 465 3 1223 253 309 14 14 chr4 83745857 83745926 -71884194 + ORR1E LTR MaLR 1 69 -290 3 1223 298 272 27 38 chr4 83745977 83746108 -71884012 + ORR1E LTR MaLR 29 176 -183 3 1223 289 294 49 0 chr4 83747183 83747285 -71882835 + L2 LINE L2 2294 2400 -1019 3 1223 208 298 11 11 chr4 83747843 83747938 -71882182 + CT-rich Low_complexity Low_complexity 1 95 0 3 1223 378 282 137 27 chr4 83748165 83748311 -71881809 - RSINE1 SINE B4 -2 163 2 3 1223 270 0 0 0 chr4 83749985 83750015 -71880105 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1223 231 274 38 88 chr4 83750598 83750678 -71879442 + MLT1J LTR MaLR 102 177 -335 3 1223 324 0 0 0 chr4 83752056 83752092 -71878028 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1223 185 167 0 40 chr4 83752949 83752999 -71877121 + CT-rich Low_complexity Low_complexity 1 48 0 3 1223 180 0 0 0 chr4 83753024 83753044 -71877076 + (CTG)n Simple_repeat Simple_repeat 1 20 0 3 1223 393 244 103 17 chr4 83753078 83753195 -71876925 - LTR33B LTR ERVL -308 195 69 3 1223 296 289 12 0 chr4 83753362 83753445 -71876675 + MIR3 SINE MIR 96 179 -29 3 1224 364 265 24 0 chr4 83755245 83755328 -71874792 - PB1D10 SINE Alu -32 85 1 3 1224 228 197 50 50 chr4 83755879 83755959 -71874161 + RMER17A LTR ERVK 154 233 -518 3 1224 396 0 0 0 chr4 83756482 83756526 -71873594 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1224 514 298 48 43 chr4 83756937 83757144 -71872976 + MIRb SINE MIR 1 208 -60 3 1224 486 0 0 0 chr4 83757251 83757305 -71872815 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1224 689 321 32 19 chr4 83757330 83757546 -71872574 - B4 SINE B4 -72 220 2 3 1224 509 304 85 45 chr4 83757700 83757924 -71872196 - B4A SINE B4 -59 233 1 3 1224 303 307 50 0 chr4 83758889 83758990 -71871130 + Lx8 LINE L1 7168 7273 -200 3 1224 241 306 38 76 chr4 83759546 83759677 -71870443 + Charlie26a DNA MER1_type 189 314 -11 3 1224 250 289 131 12 chr4 83761226 83761310 -71868810 + MLT1J LTR MaLR 405 498 -14 3 1224 1214 184 10 5 chr4 83761552 83761759 -71868361 + B3 SINE B2 6 213 -3 3 1224 738 316 0 27 chr4 83761899 83762120 -71868000 + MIR SINE MIR 10 224 -38 3 1224 216 143 0 0 chr4 83762180 83762222 -71867898 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1224 1876 113 124 0 chr4 83762593 83762884 -71867236 + ORR1A2 LTR MaLR 1 327 0 3 1224 1640 158 193 6 chr4 83763375 83763707 -71866413 + ORR1B1 LTR MaLR 1 394 0 3 1224 482 345 18 51 chr4 83763837 83764112 -71866008 + L4 LINE RTE 523 788 -1241 3 1224 397 0 38 0 chr4 83764266 83764319 -71865801 + (TGG)n Simple_repeat Simple_repeat 2 56 0 3 1224 606 103 77 11 chr4 83764321 83764606 -71865514 + (TG)n Simple_repeat Simple_repeat 1 304 0 3 1224 769 89 29 18 chr4 83764683 83764854 -71865266 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1224 873 90 0 0 chr4 83765319 83765452 -71864668 + (CA)n Simple_repeat Simple_repeat 2 134 0 3 1224 349 306 100 44 chr4 83767406 83767635 -71862485 + LTR16A1 LTR ERVL 215 456 0 3 1224 196 325 78 19 chr4 83767657 83767811 -71862309 + L2 LINE L2 2353 2515 -904 3 1224 1337 209 53 25 chr4 83768577 83768900 -71861220 + Lx7 LINE L1 5926 6257 -1439 3 1224 2632 195 46 66 chr4 83768909 83769557 -71860563 + Lx7 LINE L1 7062 7696 0 3 1224 1001 89 7 0 chr4 83769563 83769709 -71860411 + (GGA)n Simple_repeat Simple_repeat 1 147 0 3 1224 246 62 0 0 chr4 83769739 83769771 -71860349 + (GGA)n Simple_repeat Simple_repeat 3 34 0 3 1224 405 0 0 0 chr4 83770344 83770389 -71859731 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1224 690 281 44 22 chr4 83770462 83770688 -71859432 - B4A SINE B4 -61 231 1 3 1224 799 182 5 86 chr4 83771205 83771403 -71858717 + B3A SINE B2 1 182 -16 3 1224 353 78 20 0 chr4 83771403 83771454 -71858666 + HAL1-3A_ME LINE L1 1983 2034 -824 3 1224 597 122 0 0 chr4 83771456 83771571 -71858549 + (CAGA)n Simple_repeat Simple_repeat 2 116 0 3 1224 186 191 0 0 chr4 83771903 83771950 -71858170 + A-rich Low_complexity Low_complexity 1 47 0 3 1224 271 355 96 96 chr4 83772897 83773084 -71857036 - MLT1B LTR MaLR -8 382 196 3 1224 256 186 54 65 chr4 83773185 83773277 -71856843 - L1M3 LINE L1 -1116 5024 4934 3 1224 624 291 99 37 chr4 83773439 83773682 -71856438 - B4 SINE B4 -34 258 1 3 1224 496 270 85 30 chr4 83773687 83773851 -71856269 - MLT1B LTR MaLR -215 175 3 3 1224 1966 173 98 16 chr4 83774038 83774425 -71855695 - MTC LTR MaLR -2 419 1 3 1224 728 258 133 73 chr4 83774958 83775259 -71854861 + MLT1A0 LTR MaLR 39 357 -8 3 1224 480 317 14 0 chr4 83776002 83776144 -71853976 + B1F SINE Alu 1 144 -5 3 1224 279 0 0 0 chr4 83777633 83777664 -71852456 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1224 258 339 62 9 chr4 83778110 83778223 -71851897 + MIRc SINE MIR 8 126 -142 3 1224 188 338 154 50 chr4 83778260 83778721 -71851399 + L2 LINE L2 2006 2514 -905 3 1224 530 267 7 43 chr4 83778929 83779054 -71851066 + B3 SINE B2 81 203 -13 3 1224 768 203 14 0 chr4 83779054 83779197 -71850923 + B1_Mur2 SINE Alu 5 149 0 3 1224 530 267 7 43 chr4 83779197 83779212 -71850908 + B3 SINE B2 204 216 0 3 1224 429 179 0 48 chr4 83779784 83779972 -71850148 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1224 840 123 0 32 chr4 83780023 83780208 -71849912 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1224 257 51 26 0 chr4 83780521 83780560 -71849560 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1224 350 324 0 0 chr4 83780563 83780668 -71849452 - PB1D10 SINE Alu -12 105 1 3 1224 316 277 54 85 chr4 83780697 83780827 -71849293 - MER63B DNA AcHobo -5 431 306 3 1224 346 196 51 40 chr4 83782385 83782560 -71847560 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 1224 208 203 15 15 chr4 83782578 83782643 -71847477 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1224 473 165 10 0 chr4 83782661 83782758 -71847362 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 1224 639 98 0 0 chr4 83784175 83784267 -71845853 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1224 1690 171 108 60 chr4 83784836 83785216 -71844904 - MTD LTR MaLR -21 398 1 3 1224 315 264 28 0 chr4 83785385 83785457 -71844663 + 7SLRNA srpRNA srpRNA 7 80 -234 3 1224 568 215 117 7 chr4 83785857 83785996 -71844124 - ORR1D1 LTR MaLR 0 374 220 3 1224 3221 146 30 6 chr4 83785996 83786521 -71843599 - RLTR20A LTR ERVK -3 538 1 3 1224 710 150 12 18 chr4 83786522 83786685 -71843435 - ORR1D1 LTR MaLR -161 213 1 3 1224 386 285 99 19 chr4 83786830 83786991 -71843129 + MLT1E3 LTR MaLR 3 176 -189 3 1224 833 144 129 32 chr4 83787014 83787200 -71842920 - ORR1D2 LTR MaLR 0 370 167 3 1224 2439 87 0 0 chr4 83787204 83787525 -71842595 + ORR1A2 LTR MaLR 7 327 0 3 1224 650 297 50 15 chr4 83787525 83787693 -71842427 - ORR1D2 LTR MaLR -195 175 1 3 1224 4641 212 129 34 chr4 83787695 83788945 -71841175 - ORR1D2-int LTR MaLR -2 1368 1 3 1224 990 269 117 7 chr4 83788945 83789245 -71840875 - ORR1D2 LTR MaLR 0 370 38 3 1224 250 286 13 13 chr4 83789332 83789410 -71840710 + L1ME3A LINE L1 5872 5949 -224 3 1224 441 311 0 8 chr4 83789412 83789532 -71840588 + B1F2 SINE Alu 18 136 -13 3 1224 328 309 0 60 chr4 83789532 83789546 -71840574 + ID_B1 SINE B4 99 224 0 3 1224 39 0 0 0 chr4 83789595 83789634 -71840486 + AT_rich Low_complexity Low_complexity 1 39 0 3 1224 212 241 144 51 chr4 83789870 83789988 -71840132 - MIRm SINE MIR -142 134 6 3 1224 830 83 0 8 chr4 83790542 83790574 -71839546 + (GAA)n Simple_repeat Simple_repeat 1 32 0 3 1224 1536 22 0 0 chr4 83790574 83790754 -71839366 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1224 830 83 0 8 chr4 83790754 83790842 -71839278 + (GAA)n Simple_repeat Simple_repeat 3 90 0 3 1224 1731 163 113 59 chr4 83791546 83791917 -71838203 - ORR1B1 LTR MaLR -3 391 1 3 1224 896 318 83 53 chr4 83792314 83792785 -71837335 + MLT1E3 LTR MaLR 139 623 -1 3 1224 1714 179 88 48 chr4 83792839 83793108 -71837012 + ORR1B2 LTR MaLR 1 295 -72 3 1224 1157 71 0 0 chr4 83793108 83793249 -71836871 + B1_Mus1 SINE Alu 1 141 -7 3 1224 1714 179 88 48 chr4 83793249 83793332 -71836788 + ORR1B2 LTR MaLR 296 367 0 3 1224 192 40 0 0 chr4 83793474 83793499 -71836621 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 1224 648 64 20 41 chr4 83794208 83794355 -71835765 + (TA)n Simple_repeat Simple_repeat 1 144 0 3 1224 234 0 0 0 chr4 83794355 83794380 -71835740 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1224 587 330 64 25 chr4 83794583 83794863 -71835257 - MLT1C LTR MaLR -34 433 143 3 1224 1130 240 54 70 chr4 83794861 83795175 -71834945 - ORR1E LTR MaLR -4 355 47 3 1224 234 300 66 11 chr4 83795223 83795314 -71834806 - MLT1C LTR MaLR -371 96 1 3 1224 182 285 71 116 chr4 83795389 83795544 -71834576 + MIRb SINE MIR 121 268 0 3 1224 433 140 39 32 chr4 83795930 83796085 -71834035 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 1224 339 126 65 16 chr4 83796096 83796288 -71833832 + (CA)n Simple_repeat Simple_repeat 1 201 0 3 1224 25 0 0 0 chr4 83797078 83797103 -71833017 + AT_rich Low_complexity Low_complexity 1 25 0 4 1224 200 341 32 32 chr4 83798569 83798663 -71831457 + MIRm SINE MIR 68 161 -115 4 1224 248 340 83 25 chr4 83798772 83798950 -71831170 - MIRb SINE MIR -72 196 4 4 1224 623 174 264 22 chr4 83799029 83799211 -71830909 - URR1A DNA MER1_type 0 226 1 4 1224 197 379 23 11 chr4 83800061 83800149 -71829971 + MIRc SINE MIR 21 109 -159 4 1224 484 278 113 23 chr4 83800908 83801085 -71829035 + MER58A DNA MER1_type 29 221 -3 4 1224 186 43 0 0 chr4 83801195 83801218 -71828902 + (CTG)n Simple_repeat Simple_repeat 2 24 0 4 1224 621 181 0 0 chr4 83801264 83801402 -71828718 + CT-rich Low_complexity Low_complexity 2 139 0 4 1224 243 374 53 8 chr4 83802891 83803023 -71827097 - MIR SINE MIR -60 202 65 4 1224 350 381 63 32 chr4 83803318 83803570 -71826550 + LTR33 LTR ERVL 27 286 -229 4 1224 29 0 0 0 chr4 83804704 83804733 -71825387 + AT_rich Low_complexity Low_complexity 1 29 0 4 1224 286 212 190 36 chr4 83804733 83804842 -71825278 - B1F1 SINE Alu -39 110 5 4 1224 284 293 154 21 chr4 83804749 83804892 -71825228 - ID_B1 SINE B4 -30 194 33 4 1224 463 295 124 96 chr4 83804895 83804956 -71825164 + ORR1E LTR MaLR 6 67 -292 4 1224 3393 38 0 0 chr4 83804956 83805352 -71824768 - L1Md_A LINE L1 0 6582 6187 4 1224 463 295 124 96 chr4 83805352 83805613 -71824507 + ORR1E LTR MaLR 68 337 -22 4 1224 468 35 0 0 chr4 83805635 83805693 -71824427 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 4 1224 282 261 0 55 chr4 83805710 83805783 -71824337 - ID4 SINE ID -13 70 2 4 1224 497 312 57 16 chr4 83806097 83806289 -71823831 - B4A SINE B4 -92 200 1 4 1224 393 371 93 19 chr4 83806780 83807038 -71823082 - MLT1L LTR MaLR -324 286 10 4 1224 597 28 0 0 chr4 83807058 83807129 -71822991 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1224 486 75 0 0 chr4 83807130 83807197 -71822923 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1224 239 208 38 0 chr4 83807578 83807631 -71822489 + ID4_ SINE ID 2 56 -27 4 1224 687 84 0 0 chr4 83807740 83807835 -71822285 + (TTTTG)n Simple_repeat Simple_repeat 3 97 0 4 1224 260 292 15 0 chr4 83808528 83808593 -71821527 + MIRc SINE MIR 86 151 -117 4 1224 1085 261 66 79 chr4 83808593 83808972 -71821148 + MTE2a LTR MaLR 5 378 -1 4 1224 971 214 65 16 chr4 83809261 83809595 -71820525 + ORR1D1 LTR MaLR 1 421 0 4 1224 351 288 98 67 chr4 83809606 83809770 -71820350 - MLT1A1 LTR MaLR -8 400 232 4 1224 362 352 101 27 chr4 83811178 83811397 -71818723 - L2a LINE L2 -5 3421 3187 4 1224 492 345 81 14 chr4 83811411 83811634 -71818486 - MLT1E1A LTR MaLR -15 665 428 4 1224 367 239 138 26 chr4 83811639 83811755 -71818365 - MLT1E1A LTR MaLR -364 316 188 4 1224 276 378 0 0 chr4 83811859 83811957 -71818163 + MIR SINE MIR 18 115 -147 4 1224 305 296 115 36 chr4 83812255 83812420 -71817700 + MIRb SINE MIR 11 188 -80 4 1224 668 293 41 104 chr4 83812470 83812863 -71817257 + MLT1A LTR MaLR 7 374 0 4 1224 544 320 83 47 chr4 83813545 83813846 -71816274 - MLT1A0 LTR MaLR -50 315 4 4 1224 1135 261 7 29 chr4 83813966 83814225 -71815895 + MTE2a LTR MaLR 1 256 -123 4 1224 3120 80 0 15 chr4 83814225 83814594 -71815526 + MTB LTR MaLR 1 369 -31 4 1224 441 103 0 0 chr4 83814594 83814662 -71815458 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1224 3120 80 0 15 chr4 83814662 83814698 -71815422 + MTB LTR MaLR 370 400 0 4 1224 1764 158 71 32 chr4 83814698 83814855 -71815265 - ORR1C2 LTR MaLR -31 353 192 4 1224 294 29 0 0 chr4 83814855 83814890 -71815230 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1224 531 0 0 0 chr4 83814890 83814949 -71815171 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1224 1764 158 71 32 chr4 83814949 83815130 -71814990 - ORR1C2 LTR MaLR -193 191 2 4 1224 420 252 78 0 chr4 83815130 83815233 -71814887 + MTE2a LTR MaLR 269 379 0 4 1224 1031 274 158 6 chr4 83815234 83815557 -71814563 + MTE2a-int LTR MaLR 3 374 -1206 4 1224 2233 265 136 16 chr4 83815643 83816311 -71813809 + MTE2a-int LTR MaLR 833 1580 0 4 1224 955 250 132 46 chr4 83816311 83816659 -71813461 + MTE2a LTR MaLR 1 378 -1 4 1224 1877 281 113 40 chr4 83816905 83817701 -71812419 + MER45B DNA Tip100 32 885 -155 4 1224 361 289 31 0 chr4 83817714 83817811 -71812309 + B1F SINE Alu 2 101 -48 4 1224 210 344 30 50 chr4 83817721 83817822 -71812298 + ID_B1 SINE B4 90 188 -36 4 1224 226 299 60 45 chr4 83817836 83817969 -71812151 + MER45B DNA Tip100 890 1024 -16 4 1224 774 264 58 64 chr4 83819416 83819744 -71810376 + LTR81A LTR ERV1? 6 331 -1019 4 1224 180 111 0 0 chr4 83822435 83822462 -71807658 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1224 1284 20 7 0 chr4 83822637 83822783 -71807337 + B1_Mm SINE Alu 1 147 0 4 1224 3587 18 2 0 chr4 83824061 83824456 -71805664 + MTA_Mm LTR MaLR 1 396 0 4 1224 9320 34 4 1 chr4 83824456 83825551 -71804569 + MTA_Mm-int LTR MaLR 1 1098 0 4 1224 3587 18 2 0 chr4 83825551 83825946 -71804174 + MTA_Mm LTR MaLR 1 396 0 4 1224 811 274 14 14 chr4 83827246 83827457 -71802663 + ID_B1 SINE B4 1 211 -13 4 1224 1237 275 102 37 chr4 83827624 83827845 -71802275 + L1MA6 LINE L1 5476 5719 -581 4 1224 1290 231 23 65 chr4 83827845 83828230 -71801890 + ORR1D2 LTR MaLR 1 369 -1 4 1224 1237 275 102 37 chr4 83828230 83828624 -71801496 + L1MA6 LINE L1 5720 6131 -169 4 1224 975 277 54 10 chr4 83828647 83828942 -71801178 + ORR1E LTR MaLR 50 357 -2 4 1224 429 338 21 0 chr4 83829103 83829248 -71800872 - MER97c DNA MER1_type? -917 173 26 4 1224 302 306 175 36 chr4 83829264 83829493 -71800627 - L1M5 LINE L1 -676 5486 5226 4 1224 477 274 0 0 chr4 83830199 83830316 -71799804 + MIR SINE MIR 144 260 -2 4 1224 1668 278 60 57 chr4 83830320 83830969 -71799151 - Tigger13a DNA MER2_type -4 767 117 4 1224 287 188 86 86 chr4 83831187 83831292 -71798828 + MIRb SINE MIR 15 119 -149 4 1224 546 82 0 0 chr4 83832216 83832301 -71797819 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1224 379 350 7 0 chr4 83834378 83834521 -71795599 + (TG)n Simple_repeat Simple_repeat 2 145 0 4 1224 21 0 0 0 chr4 83834612 83834633 -71795487 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 443 264 61 64 chr4 83835416 83835664 -71794456 - MIRm SINE MIR -17 251 6 4 1224 556 296 136 30 chr4 83835917 83836182 -71793938 + MLT1A0 LTR MaLR 4 296 -69 4 1224 338 107 18 0 chr4 83836610 83836666 -71793454 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 4 1224 2171 172 24 8 chr4 83837174 83837556 -71792564 - ORR1B1 LTR MaLR 0 394 7 4 1224 225 0 0 0 chr4 83837804 83837829 -71792291 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1224 242 346 0 55 chr4 83838755 83838865 -71791255 + MIRb SINE MIR 47 150 -118 4 1224 311 202 200 10 chr4 83839041 83839141 -71790979 - L1MD LINE L1 -2945 3201 3083 4 1224 678 105 11 0 chr4 83839143 83839238 -71790882 - B1_Mus2 SINE Alu 0 147 52 4 1224 276 319 202 24 chr4 83840657 83841029 -71789091 + L2 LINE L2 208 645 -2774 4 1224 440 201 0 37 chr4 83841204 83841338 -71788782 + CT-rich Low_complexity Low_complexity 1 129 0 4 1224 364 266 43 0 chr4 83841338 83841432 -71788688 - BC1_Mm scRNA scRNA -53 99 2 4 1224 252 286 84 59 chr4 83841860 83841979 -71788141 + MIR SINE MIR 60 181 -81 4 1224 200 323 0 0 chr4 83842148 83842213 -71787907 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1224 260 278 34 95 chr4 83843487 83843634 -71786486 + ID_B1 SINE B4 39 176 -48 4 1224 270 274 10 40 chr4 83843561 83843660 -71786460 + PB1D10 SINE Alu 22 117 0 4 1224 465 120 0 0 chr4 83843887 83843979 -71786141 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 1224 690 127 0 0 chr4 83843979 83844105 -71786015 + (GA)n Simple_repeat Simple_repeat 1 126 0 4 1224 448 305 14 7 chr4 83846073 83846215 -71783905 + (CCTG)n Simple_repeat Simple_repeat 2 144 0 4 1224 243 0 0 0 chr4 83846395 83846422 -71783698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1224 310 278 0 100 chr4 83846447 83846547 -71783573 + Charlie2a DNA MER1_type 2717 2806 -55 4 1224 281 26 0 26 chr4 83847545 83847584 -71782536 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1224 356 0 23 0 chr4 83847895 83847939 -71782181 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1224 678 296 152 10 chr4 83848311 83848621 -71781499 - MLT1B LTR MaLR -2 388 35 4 1224 354 333 22 0 chr4 83851138 83851273 -71778847 + MER5A1 DNA MER1_type 22 159 -7 4 1224 21 0 0 0 chr4 83851763 83851784 -71778336 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 210 298 18 0 chr4 83854707 83854764 -71775356 + MIR3 SINE MIR 104 161 -47 4 1224 279 0 0 0 chr4 83855321 83855352 -71774768 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 4 1224 324 230 0 86 chr4 83855352 83855433 -71774687 - ID4 SINE ID -8 75 2 4 1224 1332 171 0 9 chr4 83855944 83856162 -71773958 + B3 SINE B2 1 216 0 4 1224 1611 69 55 5 chr4 83858614 83858832 -71771288 + L1_Mus1 LINE L1 6337 6565 -2 4 1224 205 382 24 8 chr4 83860269 83860393 -71769727 - MER5A DNA MER1_type -61 128 3 4 1224 652 316 16 0 chr4 83860496 83860683 -71769437 + MER117 DNA MER1_type 1 190 -7 4 1224 227 345 11 22 chr4 83861215 83861307 -71768813 + MLT1K LTR MaLR 444 534 -61 4 1224 249 119 0 0 chr4 83862316 83862358 -71767762 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 4 1224 262 309 82 52 chr4 83864414 83864646 -71765474 + MLT1K LTR MaLR 188 426 -169 4 1224 435 19 0 0 chr4 83865612 83865664 -71764456 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1224 297 0 0 0 chr4 83865664 83865696 -71764424 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1224 817 220 3 9 chr4 83866169 83866477 -71763643 + C-rich Low_complexity Low_complexity 1 306 0 4 1224 267 217 0 0 chr4 83866501 83866561 -71763559 + CT-rich Low_complexity Low_complexity 4 63 0 4 1224 552 77 33 0 chr4 83866671 83866762 -71763358 + (TC)n Simple_repeat Simple_repeat 1 94 0 4 1224 253 330 107 75 chr4 83869022 83869274 -71760846 + MIRb SINE MIR 1 260 -8 4 1224 875 161 0 20 chr4 83869479 83869625 -71760495 + B1_Mus1 SINE Alu 3 145 -3 4 1224 222 37 0 0 chr4 83869625 83869652 -71760468 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1224 204 40 0 0 chr4 83869671 83869696 -71760424 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 5 1224 377 375 71 0 chr4 83869719 83869943 -71760177 - L1ME4a LINE L1 -45 6079 5840 5 1224 378 0 0 0 chr4 83871489 83871531 -71758589 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1224 543 351 96 0 chr4 83871802 83871990 -71758130 - MLT1A0 LTR MaLR -159 206 1 5 1224 270 331 155 0 chr4 83872543 83872700 -71757420 - MIR SINE MIR -18 244 64 5 1224 211 227 149 64 chr4 83873101 83873195 -71756925 - L2a LINE L2 -8 3418 3317 5 1224 409 346 115 99 chr4 83873241 83873606 -71756514 - MLT1H2 LTR MaLR -2 487 117 5 1224 285 338 82 37 chr4 83874368 83874503 -71755617 - MamGypLTR1c LTR Gypsy -662 141 1 5 1224 574 319 67 25 chr4 83874844 83875082 -71755038 - MIRb SINE MIR 0 268 21 5 1224 225 227 197 13 chr4 83878768 83878844 -71751276 + MIRb SINE MIR 97 186 -82 5 1224 487 281 65 0 chr4 83878866 83879019 -71751101 - MIRb SINE MIR -20 248 86 5 1224 299 322 7 7 chr4 83879245 83879389 -71750731 + (TG)n Simple_repeat Simple_repeat 1 144 0 5 1224 297 0 0 0 chr4 83879389 83879422 -71750698 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1224 414 0 0 0 chr4 83880214 83880260 -71749860 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1224 532 236 96 62 chr4 83882758 83882974 -71747146 - MTEa LTR MaLR -2 377 149 5 1224 353 22 0 21 chr4 83882974 83883021 -71747099 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1224 449 296 128 105 chr4 83883021 83883147 -71746973 - MTEa LTR MaLR -211 148 10 5 1224 216 0 0 0 chr4 83883256 83883280 -71746840 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1224 232 307 36 78 chr4 83884012 83884231 -71745889 - RLTR21 LTR ERVK -292 1280 1071 5 1224 189 214 0 0 chr4 83884472 83884514 -71745606 + (TTG)n Simple_repeat Simple_repeat 1 42 0 5 1224 235 0 0 54 chr4 83886023 83886060 -71744060 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 2 1037 98 0 40 chr4 83886060 83886204 -71743916 - B1_Mm SINE Alu -4 143 6 5 1225 220 179 0 0 chr4 83886583 83886622 -71743498 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1225 499 269 171 10 chr4 83888857 83889056 -71741064 - MLT1E2 LTR MaLR -3 624 394 5 1225 787 208 166 35 chr4 83889121 83889320 -71740800 - URR1B DNA MER1_type 0 225 1 5 1225 1144 206 83 12 chr4 83889881 83890205 -71739915 + Charlie1a DNA MER1_type 1088 1434 -21 5 1225 872 80 29 21 chr4 83890299 83890439 -71739681 - Lx2 LINE L1 -6 6991 6851 5 1225 226 284 0 86 chr4 83890813 83890894 -71739226 + L2a LINE L2 3351 3424 -2 5 1225 244 282 98 88 chr4 83892502 83892696 -71737424 - MER2 DNA MER2_type -22 323 128 5 1225 276 77 0 0 chr4 83892976 83893015 -71737105 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 1225 259 269 0 69 chr4 83893910 83893982 -71736138 - L2b LINE L2 -1 3386 3317 5 1225 5438 57 0 0 chr4 83894129 83894791 -71735329 + L1Md_T LINE L1 5921 6582 0 5 1225 396 0 0 0 chr4 83896305 83896349 -71733771 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1225 342 296 12 30 chr4 83897913 83898080 -71732040 - RSINE1 SINE B4 0 165 2 5 1225 21 36 0 0 chr4 83899486 83899514 -71730606 + AT_rich Low_complexity Low_complexity 1 28 0 5 1225 249 108 0 0 chr4 83899563 83899600 -71730520 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1225 553 308 47 17 chr4 83900147 83900381 -71729739 - MLT1I LTR MaLR -127 284 39 5 1225 366 289 0 0 chr4 83900905 83901071 -71729049 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 1225 227 275 0 28 chr4 83901202 83901273 -71728847 + BLACKJACK DNA AcHobo 2874 2942 -2 5 1225 424 330 9 0 chr4 83901279 83901412 -71728708 + MIR SINE MIR 17 150 -118 5 1225 286 274 117 41 chr4 83902344 83902661 -71727459 + LTR50 LTR ERVL 387 640 -155 5 1225 322 252 260 35 chr4 83903509 83903678 -71726442 + B4A SINE B4 1 207 -85 5 1225 645 285 97 7 chr4 83904058 83904494 -71725626 - L1MEf LINE L1 -5098 1404 921 5 1225 335 292 137 20 chr4 83904495 83904743 -71725377 - MLT1F2 LTR MaLR -3 557 281 5 1225 8161 31 0 0 chr4 83905070 83906003 -71724117 + L1Md_T LINE L1 5650 6582 0 5 1225 613 297 130 6 chr4 83906017 83906339 -71723781 + L1MB3 LINE L1 5729 6090 -93 5 1225 519 219 241 56 chr4 83907578 83907864 -71722256 - Lx8 LINE L1 0 7473 7135 5 1225 1919 312 27 15 chr4 83907875 83908471 -71721649 - Lx8 LINE L1 -537 6936 6334 5 1225 312 137 0 0 chr4 83908868 83908919 -71721201 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 5 1225 308 273 34 11 chr4 83908925 83909023 -71721097 - B1F SINE Alu -20 100 1 5 1225 210 143 0 0 chr4 83910281 83910316 -71719804 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1225 495 0 0 0 chr4 83915311 83915366 -71714754 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1225 229 183 16 16 chr4 83916231 83916292 -71713828 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1225 206 118 0 0 chr4 83920964 83920998 -71709122 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1225 298 42 42 0 chr4 83921374 83921422 -71708698 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1225 426 69 0 0 chr4 83923872 83923930 -71706190 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1225 1278 256 54 32 chr4 83926579 83926950 -71703170 + MTE2b LTR MaLR 1 379 0 5 1225 387 0 0 0 chr4 83927243 83927286 -71702834 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1225 660 276 116 35 chr4 83927289 83927608 -71702512 - MER2 DNA MER2_type 0 345 1 5 1225 519 95 0 0 chr4 83931106 83931180 -71698940 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1225 345 24 0 0 chr4 83934327 83934369 -71695751 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1225 204 40 0 0 chr4 83935395 83935420 -71694700 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1225 641 279 138 48 chr4 83940837 83941357 -71688763 + L1MC4a LINE L1 7272 7838 -44 5 1225 1179 134 119 5 chr4 83942887 83943089 -71687031 - URR1A DNA MER1_type -1 225 1 5 1225 266 311 141 7 chr4 83943195 83943344 -71686776 + MER5C1 DNA MER1_type 92 260 -3 5 1225 1129 259 36 10 chr4 83944359 83944773 -71685347 + L1_Mur3 LINE L1 4311 4735 -1145 5 1225 1170 261 45 23 chr4 83944773 83945266 -71684854 + Lx8 LINE L1 5339 5930 -373 5 1225 244 311 9 64 chr4 83945297 83945407 -71684713 - Lx8 LINE L1 -893 6580 6477 5 1225 1482 281 165 46 chr4 83945413 83946092 -71684028 + Lx8 LINE L1 6418 7161 -312 5 1225 411 21 0 0 chr4 83946092 83946140 -71683980 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1225 1482 274 53 63 chr4 83946140 83946404 -71683716 + Lx8 LINE L1 7162 7439 -34 5 1225 429 346 93 26 chr4 83946982 83947326 -71682794 + L1ME1 LINE L1 5787 6153 -26 5 1225 434 318 40 7 chr4 83947571 83947723 -71682397 - RSINE1 SINE B4 -4 161 5 5 1225 1294 143 236 0 chr4 83948077 83948335 -71681785 - MTC LTR MaLR -45 376 58 5 1225 215 164 0 35 chr4 83948661 83948718 -71681402 + (TATG)n Simple_repeat Simple_repeat 1 55 0 5 1225 263 0 81 0 chr4 83949372 83949409 -71680711 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 5 1225 333 0 0 0 chr4 83950406 83950443 -71679677 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1225 931 118 33 0 chr4 83955098 83955251 -71674869 + URR1B DNA MER1_type 68 225 0 5 1225 26 0 0 0 chr4 83956669 83956695 -71673425 + AT_rich Low_complexity Low_complexity 1 26 0 5 1225 180 267 48 32 chr4 83956883 83956945 -71673175 - MIR SINE MIR -84 124 62 5 1225 307 196 44 6 chr4 83958706 83958865 -71671255 + (TA)n Simple_repeat Simple_repeat 2 166 0 5 1225 373 198 8 87 chr4 83958866 83958993 -71671127 - L1MA4 LINE L1 -374 5926 5810 5 1225 258 280 63 21 chr4 83959040 83959135 -71670985 - ID_B1 SINE B4 -5 219 121 5 1225 305 245 0 0 chr4 83959155 83959216 -71670904 - B1F1 SINE Alu -88 61 1 5 1225 772 318 111 39 chr4 83960214 83960600 -71669520 - MER68 LTR ERVL -2 561 148 5 1225 206 118 0 0 chr4 83964332 83964366 -71665754 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1225 618 221 11 11 chr4 83964865 83965315 -71664805 + (CA)n Simple_repeat Simple_repeat 1 450 0 5 1225 907 226 65 5 chr4 83966255 83966455 -71663665 - B3 SINE B2 0 216 5 5 1225 261 0 0 0 chr4 83967002 83967031 -71663089 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1225 211 328 0 0 chr4 83971396 83971463 -71658657 + L2b LINE L2 3081 3147 -228 5 1225 240 341 37 82 chr4 83971505 83971639 -71658481 + L2b LINE L2 3227 3354 -21 5 1225 490 165 0 56 chr4 83971876 83971966 -71658154 - PB1D9 SINE Alu -6 114 30 5 1225 532 241 226 18 chr4 83972515 83972798 -71657322 + ORR1D2 LTR MaLR 2 370 -4 5 1225 251 274 0 0 chr4 83974117 83974201 -71655919 - L1ME2z LINE L1 -19 6425 6342 5 1225 240 363 38 70 chr4 83974588 83974745 -71655375 - MIR SINE MIR -1 261 110 5 1225 184 270 51 63 chr4 83975133 83975212 -71654908 + MIRb SINE MIR 189 266 -2 5 1225 351 136 0 0 chr4 83976332 83976391 -71653729 + (GGA)n Simple_repeat Simple_repeat 3 61 0 5 1225 252 0 0 0 chr4 83976400 83976428 -71653692 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 5 1225 207 69 0 0 chr4 83978318 83978347 -71651773 + (CG)n Simple_repeat Simple_repeat 1 29 0 5 1225 204 40 0 0 chr4 83978347 83978371 -71651749 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1225 210 290 0 0 chr4 83980828 83980983 -71649137 + (CATAA)n Simple_repeat Simple_repeat 3 157 0 5 1225 27 0 0 0 chr4 83981429 83981456 -71648664 + AT_rich Low_complexity Low_complexity 1 27 0 5 1225 243 0 0 0 chr4 83982153 83982180 -71647940 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1225 1453 184 48 28 chr4 83982346 83982778 -71647342 + Lx4B LINE L1 6480 6904 -96 5 1225 726 230 0 0 chr4 83983595 83983769 -71646351 + (TA)n Simple_repeat Simple_repeat 1 174 0 6 1225 685 327 19 0 chr4 83983769 83983928 -71646192 - RSINE1 SINE B4 0 165 4 6 1225 23 0 0 0 chr4 83983934 83983957 -71646163 + AT_rich Low_complexity Low_complexity 1 23 0 6 1225 359 273 149 92 chr4 83984809 83984950 -71645170 + B1_Mur1 SINE Alu 1 149 0 6 1225 247 265 77 88 chr4 83985489 83985561 -71644559 - L2b LINE L2 -5 3382 3296 6 1225 359 41 20 0 chr4 83985561 83985610 -71644510 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 6 1225 198 265 77 88 chr4 83985610 83985628 -71644492 - L2b LINE L2 -77 3310 3293 6 1225 247 343 14 0 chr4 83986802 83986872 -71643248 + ID SINE ID 12 82 -142 6 1225 841 176 23 28 chr4 83988049 83988225 -71641895 - URR1A DNA MER1_type 0 226 52 6 1225 197 395 69 41 chr4 83988368 83988690 -71641430 - L2a LINE L2 -17 3409 3032 6 1225 231 191 68 81 chr4 83989656 83989730 -71640390 + ID4_ SINE ID 10 82 -1 6 1225 289 71 0 51 chr4 83989745 83989804 -71640316 + (CAA)n Simple_repeat Simple_repeat 2 57 0 6 1225 202 339 199 22 chr4 83990694 83990875 -71639245 + MIR SINE MIR 13 225 -37 6 1225 222 209 0 0 chr4 83990910 83990953 -71639167 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1225 612 289 99 14 chr4 83991843 83992052 -71638068 + B4 SINE B4 1 227 -65 6 1225 970 328 15 0 chr4 83992052 83992320 -71637800 + B4A SINE B4 1 272 -20 6 1225 2732 203 162 7 chr4 83993141 83993874 -71636246 + Lx4B LINE L1 6208 7054 -4 6 1225 303 348 7 7 chr4 83995397 83995533 -71634587 + MIRb SINE MIR 95 230 -38 6 1225 25 0 0 0 chr4 83997231 83997256 -71632864 + AT_rich Low_complexity Low_complexity 1 25 0 6 1225 221 225 0 0 chr4 83998108 83998148 -71631972 + polypyrimidine Low_complexity Low_complexity 2 41 0 6 1225 192 40 0 0 chr4 83999540 83999565 -71630555 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1225 483 164 49 0 chr4 84000219 84000341 -71629779 - Lx9 LINE L1 -8 7636 7509 1 1225 185 200 0 0 chr4 84000435 84000470 -71629650 + MIR SINE MIR 110 144 -118 2 1225 225 0 0 0 chr4 84002245 84002270 -71627850 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1225 234 91 0 0 chr4 84002948 84002981 -71627139 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1225 189 0 0 0 chr4 84003060 84003081 -71627039 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1225 218 32 32 0 chr4 84005568 84005599 -71624521 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 6 1225 250 326 74 0 chr4 84006459 84006554 -71623566 - MIR SINE MIR -88 174 73 7 1225 24 32 0 0 chr4 84008824 84008855 -71621265 + AT_rich Low_complexity Low_complexity 1 31 0 8 1225 271 286 15 85 chr4 84009822 84009952 -71620168 + Arthur1C DNA Tip100 152 272 -91 9 1225 2703 163 114 2 chr4 84010588 84011184 -71618936 + Lx9 LINE L1 6981 7643 -1 1 1225 183 310 97 29 chr4 84012280 84012383 -71617737 - L2c LINE L2 -9 3378 3269 1 1225 353 355 108 0 chr4 84014296 84014499 -71615621 + L1MC4a LINE L1 5626 5850 -2032 1 1225 532 344 175 18 chr4 84014516 84014916 -71615204 - MLT1D LTR MaLR -20 485 23 1 1225 30 59 0 0 chr4 84015320 84015371 -71614749 + AT_rich Low_complexity Low_complexity 1 51 0 1 1226 545 238 119 96 chr4 84017214 84017474 -71612646 + B4A SINE B4 5 270 -22 1 1226 309 316 0 0 chr4 84017894 84017970 -71612150 + PB1D10 SINE Alu 24 99 -18 1 1226 279 0 0 0 chr4 84017978 84018009 -71612111 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1226 460 308 95 0 chr4 84018248 84018459 -71611661 + MER63D DNA AcHobo 4 234 -827 1 1226 278 241 92 12 chr4 84018520 84018605 -71611515 + PB1D7 SINE Alu 21 111 -38 1 1226 273 195 33 54 chr4 84019389 84019481 -71610639 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 2 1226 252 206 139 0 chr4 84020885 84020979 -71609141 + PB1D7 SINE Alu 9 113 -34 2 1226 249 270 91 147 chr4 84021343 84021578 -71608542 + MLT1H2 LTR MaLR 9 270 -279 2 1226 27 0 0 0 chr4 84025904 84025931 -71604189 + AT_rich Low_complexity Low_complexity 1 27 0 2 1226 258 143 0 171 chr4 84028017 84028093 -71602027 + B4A SINE B4 83 145 -147 2 1226 382 244 68 17 chr4 84028038 84028155 -71601965 + B1_Mur4 SINE Alu 6 128 -22 2 1226 342 172 0 17 chr4 84029057 84029116 -71601004 - BC1_Mm scRNA scRNA -67 85 28 2 1226 209 356 96 22 chr4 84029411 84029546 -71600574 - MIRb SINE MIR -122 146 2 2 1226 270 0 0 0 chr4 84029577 84029607 -71600513 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1226 886 158 0 7 chr4 84029707 84029847 -71600273 + B1_Mus1 SINE Alu 10 148 0 2 1226 278 298 119 28 chr4 84029936 84030112 -71600008 - MIRb SINE MIR -10 258 67 3 1226 23 0 0 0 chr4 84032967 84032990 -71597130 + AT_rich Low_complexity Low_complexity 1 23 0 3 1226 3783 52 19 0 chr4 84033050 84033516 -71596604 + MT2C_Mm LTR ERVL 1 475 0 3 1226 244 241 19 0 chr4 84033702 84033756 -71596364 + B3A SINE B2 1 55 -143 3 1226 23 0 0 0 chr4 84033847 84033870 -71596250 + AT_rich Low_complexity Low_complexity 1 23 0 3 1226 3091 14 0 6 chr4 84034296 84034644 -71595476 + ORR1A0 LTR MaLR 1 346 0 3 1226 931 290 66 11 chr4 84035151 84035500 -71594620 + ORR1D2 LTR MaLR 1 368 -2 3 1226 265 304 147 0 chr4 84037418 84037520 -71592600 + PB1D10 SINE Alu 1 117 0 3 1226 272 278 134 48 chr4 84037612 84037746 -71592374 + PB1D10 SINE Alu 1 144 -5 3 1226 25 51 0 0 chr4 84039532 84039571 -71590549 + AT_rich Low_complexity Low_complexity 1 39 0 3 1226 411 352 48 21 chr4 84039571 84039716 -71590404 - RSINE1 SINE B4 -6 159 11 4 1226 245 297 0 0 chr4 84039901 84039965 -71590155 - MER58A DNA MER1_type -135 89 26 4 1226 256 274 66 74 chr4 84040225 84040347 -71589773 - MT2B LTR ERVL -285 316 196 4 1226 513 263 30 15 chr4 84040244 84040379 -71589741 - B1_Mus2 SINE Alu -4 143 7 4 1226 336 296 55 36 chr4 84041443 84041608 -71588512 + L2 LINE L2 1950 2117 -1302 4 1226 393 304 94 6 chr4 84041850 84042009 -71588111 - MER5A DNA MER1_type 0 189 17 4 1226 479 290 162 18 chr4 84042511 84042739 -71587381 + Charlie2a DNA MER1_type 676 936 -1925 4 1226 218 81 0 26 chr4 84042769 84042807 -71587313 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1226 207 100 49 24 chr4 84042925 84042966 -71587154 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1226 369 43 0 0 chr4 84044520 84044567 -71585553 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1226 569 202 68 23 chr4 84044827 84044959 -71585161 + B1_Mus2 SINE Alu 1 138 -9 5 1226 215 140 0 57 chr4 84044978 84045031 -71585089 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 5 1226 23 0 0 0 chr4 84045719 84045742 -71584378 + AT_rich Low_complexity Low_complexity 1 23 0 5 1226 212 184 0 0 chr4 84045779 84045817 -71584303 + (TAA)n Simple_repeat Simple_repeat 1 38 0 5 1226 366 23 0 0 chr4 84047945 84047988 -71582132 + (CAGG)n Simple_repeat Simple_repeat 3 45 0 5 1226 658 280 80 0 chr4 84051131 84051306 -71578814 - ID_B1 SINE B4 -34 190 2 5 1226 382 238 61 38 chr4 84051410 84051541 -71578579 - MER33 DNA MER1_type -152 172 39 5 1226 588 241 0 0 chr4 84052639 84052755 -71577365 - ID_B1 SINE B4 -1 223 108 5 1226 775 273 0 0 chr4 84054771 84054932 -71575188 + B3A SINE B2 2 162 -36 5 1226 279 0 0 0 chr4 84054954 84054985 -71575135 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1226 29 28 0 0 chr4 84055990 84056026 -71574094 + AT_rich Low_complexity Low_complexity 1 36 0 6 1226 285 118 0 0 chr4 84057176 84057227 -71572893 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1226 234 235 0 19 chr4 84058217 84058269 -71571851 - tRNA-Ala-GCA tRNA tRNA -20 55 5 6 1226 240 262 25 0 chr4 84058550 84058630 -71571490 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1226 692 294 141 18 chr4 84058669 84058995 -71571125 + MLT1B LTR MaLR 1 366 -24 6 1226 189 74 0 0 chr4 84060035 84060062 -71570058 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1226 279 54 0 0 chr4 84060067 84060104 -71570016 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1226 1058 170 136 4 chr4 84060969 84061241 -71568879 + RMER1B Other Other 563 870 -196 6 1226 315 0 0 0 chr4 84062531 84062566 -71567554 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1226 275 270 153 22 chr4 84064127 84064280 -71565840 - MIR SINE MIR -77 185 18 6 1226 430 207 0 65 chr4 84064667 84064760 -71565360 - RSINE1 SINE B4 -57 108 22 7 1226 252 254 55 0 chr4 84064741 84064796 -71565324 + ID_B1 SINE B4 150 207 -17 7 1226 297 0 0 0 chr4 84065234 84065267 -71564853 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1226 309 247 113 41 chr4 84065267 84065355 -71564765 + PB1 SINE Alu 29 127 0 7 1226 315 0 0 0 chr4 84065843 84065878 -71564242 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1226 254 284 45 0 chr4 84066233 84066300 -71563820 - BC1_Mm scRNA scRNA -66 86 17 7 1226 575 269 113 32 chr4 84067580 84067960 -71562160 + L1MB7 LINE L1 5759 6169 -15 7 1226 205 173 36 55 chr4 84069690 84069745 -71560375 + GA-rich Low_complexity Low_complexity 5 58 0 7 1226 1119 148 119 0 chr4 84073511 84073713 -71556407 + URR1A DNA MER1_type 1 226 0 7 1226 244 139 0 0 chr4 84076675 84076711 -71553409 + (CCCTAG)n Simple_repeat Simple_repeat 6 41 0 7 1226 540 296 28 46 chr4 84077876 84078092 -71552028 - LFSINE_Vert SINE SINE -193 266 55 8 1226 343 273 81 9 chr4 84079314 84079425 -71550695 + B4A SINE B4 152 270 -22 8 1226 22 0 0 0 chr4 84079505 84079527 -71550593 + AT_rich Low_complexity Low_complexity 1 22 0 8 1226 22 0 0 0 chr4 84079566 84079588 -71550532 + AT_rich Low_complexity Low_complexity 1 22 0 8 1226 42 77 0 0 chr4 84079649 84079740 -71550380 + AT_rich Low_complexity Low_complexity 1 91 0 8 1226 13298 68 8 0 chr4 84082543 84084703 -71545417 + L1Md_F2 LINE L1 4019 6196 -386 8 1226 478 167 16 48 chr4 84084703 84084829 -71545291 + L1Md_F2 LINE L1 6460 6581 -1 8 1226 206 339 0 0 chr4 84084965 84085021 -71545099 - L2c LINE L2 -8 3379 3324 8 1226 246 62 0 0 chr4 84087507 84087539 -71542581 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1226 194 311 105 22 chr4 84088264 84088445 -71541675 - L2c LINE L2 -62 3325 3130 8 1226 213 312 16 0 chr4 84088474 84088538 -71541582 + L2c LINE L2 3284 3348 -39 8 1226 717 279 79 32 chr4 84088688 84088966 -71541154 + LTR48 LTR ERV1 479 769 -18 9 1226 878 288 40 33 chr4 84090344 84090620 -71539500 + B4A SINE B4 1 278 -14 9 1226 229 118 39 0 chr4 84090902 84090953 -71539167 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 9 1226 285 284 47 39 chr4 84091207 84091335 -71538785 + MER34 LTR ERV1 8 136 -435 9 1226 300 355 88 58 chr4 84091380 84091640 -71538480 + MER34 LTR ERV1 271 538 -4 9 1226 187 378 16 40 chr4 84091712 84091836 -71538284 - MIRc SINE MIR -144 124 4 9 1226 691 197 0 16 chr4 84092439 84092568 -71537552 + B1_Mur1 SINE Alu 17 143 -6 9 1226 185 319 140 68 chr4 84092945 84093167 -71536953 - MIRb SINE MIR -27 241 4 9 1226 22 35 0 0 chr4 84094258 84094287 -71535833 + AT_rich Low_complexity Low_complexity 1 29 0 9 1226 180 0 0 0 chr4 84096120 84096140 -71533980 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1226 242 237 184 0 chr4 84097013 84097089 -71533031 + MER33 DNA MER1_type 1 90 -234 9 1226 206 290 0 31 chr4 84097544 84097608 -71532512 + (TATG)n Simple_repeat Simple_repeat 2 63 0 1 1226 23 0 0 0 chr4 84100362 84100385 -71529735 + AT_rich Low_complexity Low_complexity 1 23 0 1 1226 213 189 0 0 chr4 84101541 84101559 -71528561 + (CA)n Simple_repeat Simple_repeat 2 19 0 1 1226 405 0 0 0 chr4 84101559 84101604 -71528516 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1 1226 213 189 0 0 chr4 84101604 84101638 -71528482 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1226 498 249 4 4 chr4 84101627 84101890 -71528230 + (TA)n Simple_repeat Simple_repeat 1 263 0 1 1226 366 80 0 0 chr4 84104076 84104126 -71525994 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1226 369 0 0 0 chr4 84104126 84104167 -71525953 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1226 207 0 0 0 chr4 84105128 84105151 -71524969 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1226 234 0 0 0 chr4 84105151 84105176 -71524944 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1226 1180 68 0 0 chr4 84105179 84105325 -71524795 - B1_Mus2 SINE Alu 0 147 2 1 1226 26 0 0 0 chr4 84105728 84105754 -71524366 + AT_rich Low_complexity Low_complexity 1 26 0 1 1226 216 67 0 0 chr4 84105844 84105874 -71524246 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1226 288 0 0 0 chr4 84106440 84106472 -71523648 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1226 1138 62 0 14 chr4 84106472 84106610 -71523510 - B1_Mus2 SINE Alu -9 138 1 1 1226 902 109 55 0 chr4 84106750 84106878 -71523242 - B1_Mus1 SINE Alu -12 136 2 1 1226 234 0 0 0 chr4 84107422 84107448 -71522672 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1226 1217 42 0 0 chr4 84109533 84109677 -71520443 + B1_Mm SINE Alu 1 144 -3 1 1226 203 0 37 0 chr4 84109677 84109704 -71520416 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1226 746 230 18 0 chr4 84111119 84111284 -71518836 + URR1A DNA MER1_type 59 226 0 1 1226 291 304 75 81 chr4 84114642 84114803 -71515317 + RSINE1 SINE B4 4 163 -2 1 1226 764 295 56 30 chr4 84115488 84115757 -71514363 + B4A SINE B4 1 276 -16 1 1226 324 48 0 0 chr4 84115769 84115811 -71514309 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1226 1194 55 0 0 chr4 84115832 84115978 -71514142 + B1_Mm SINE Alu 2 147 0 1 1226 302 263 189 39 chr4 84116873 84117079 -71513041 + MIR SINE MIR 13 249 -13 1 1226 702 184 0 0 chr4 84119070 84119249 -71510871 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1226 475 217 0 22 chr4 84119268 84119452 -71510668 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1226 213 200 46 0 chr4 84119454 84119519 -71510601 + (CCCA)n Simple_repeat Simple_repeat 4 71 0 1 1226 534 216 0 0 chr4 84119520 84119696 -71510424 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1226 301 306 0 75 chr4 84119947 84120067 -71510053 + PB1D10 SINE Alu 1 111 -6 1 1226 1462 308 67 16 chr4 84120801 84121409 -71508711 + Lx8 LINE L1 6603 7241 -232 1 1226 21 36 0 0 chr4 84121540 84121568 -71508552 + AT_rich Low_complexity Low_complexity 1 28 0 1 1226 474 363 32 27 chr4 84123181 84123368 -71506752 + B3 SINE B2 1 188 -28 1 1226 225 164 29 29 chr4 84123370 84123439 -71506681 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 1 1226 323 78 0 19 chr4 84123441 84123493 -71506627 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 1 1226 204 125 0 0 chr4 84125462 84125494 -71504626 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1226 432 0 0 0 chr4 84128165 84128213 -71501907 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1226 203 147 0 0 chr4 84128350 84128384 -71501736 + (G)n Simple_repeat Simple_repeat 1 34 0 1 1226 210 105 0 0 chr4 84129202 84129240 -71500880 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1226 233 29 29 0 chr4 84130094 84130128 -71499992 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1226 1060 112 0 6 chr4 84130434 84130595 -71499525 + B2_Mm2 SINE B2 2 161 -34 1 1226 195 42 0 0 chr4 84130596 84130620 -71499500 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1226 504 323 58 0 chr4 84130837 84130992 -71499128 + RSINE1 SINE B4 2 165 0 1 1226 2563 53 31 6 chr4 84131417 84131776 -71498344 - L1Md_F2 LINE L1 -37 6545 6178 1 1226 259 267 51 39 chr4 84132522 84132600 -71497520 + MIRc SINE MIR 92 170 -98 1 1226 21 0 0 0 chr4 84132955 84132976 -71497144 + AT_rich Low_complexity Low_complexity 1 21 0 1 1226 23 33 0 0 chr4 84132996 84133026 -71497094 + AT_rich Low_complexity Low_complexity 1 30 0 1 1226 252 0 0 0 chr4 84133699 84133727 -71496393 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1226 631 187 82 7 chr4 84133828 84133963 -71496157 + B1_Mur3 SINE Alu 1 145 -4 1 1226 735 159 0 0 chr4 84134141 84134254 -71495866 - B3 SINE B2 -87 129 17 1 1226 22 0 0 0 chr4 84134926 84134948 -71495172 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 182 146 72 12 chr4 84135458 84135541 -71494579 + (CACG)n Simple_repeat Simple_repeat 4 91 0 1 1226 219 246 33 50 chr4 84135951 84136011 -71494109 + ID_B1 SINE B4 91 149 -75 1 1226 638 212 20 0 chr4 84136615 84136755 -71493365 - B1_Mus1 SINE Alu -1 149 2 1 1226 223 208 21 0 chr4 84136758 84136806 -71493314 + (TTG)n Simple_repeat Simple_repeat 2 50 0 1 1226 398 274 26 17 chr4 84136808 84136923 -71493197 - PB1D9 SINE Alu 0 120 5 1 1226 396 0 0 0 chr4 84138696 84138740 -71491380 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1226 1117 91 0 0 chr4 84139508 84139651 -71490469 + B1_Mus1 SINE Alu 1 143 -5 1 1226 404 223 10 0 chr4 84139651 84139754 -71490366 + GA-rich Low_complexity Low_complexity 2 105 0 1 1226 210 208 0 0 chr4 84139795 84139843 -71490277 + GA-rich Low_complexity Low_complexity 1 48 0 1 1226 185 384 71 0 chr4 84143419 84143518 -71486602 + MIRm SINE MIR 158 263 -13 1 1226 22 0 0 0 chr4 84146457 84146479 -71483641 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 21 36 0 0 chr4 84147791 84147819 -71482301 + AT_rich Low_complexity Low_complexity 1 28 0 1 1227 234 0 0 0 chr4 84148798 84148824 -71481296 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1227 581 72 12 0 chr4 84148824 84148906 -71481214 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1227 447 92 0 0 chr4 84152179 84152244 -71477876 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 1 1227 471 260 47 0 chr4 84153922 84154049 -71476071 - ID_B1 SINE B4 0 224 92 1 1227 522 270 102 8 chr4 84154061 84154188 -71475932 - B3 SINE B2 -5 211 73 1 1227 635 133 8 0 chr4 84156051 84156179 -71473941 + (TC)n Simple_repeat Simple_repeat 2 130 0 1 1227 795 75 0 0 chr4 84156890 84157010 -71473110 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 1227 716 181 67 15 chr4 84158289 84158424 -71471696 + B1_Mur4 SINE Alu 1 142 -8 1 1227 332 173 0 0 chr4 84159416 84159468 -71470652 + B1F1 SINE Alu 13 64 -85 1 1227 1112 69 7 0 chr4 84159567 84159712 -71470408 + B1_Mm SINE Alu 2 147 0 1 1227 267 337 58 0 chr4 84159738 84159824 -71470296 + PB1D10 SINE Alu 3 93 -24 1 1227 420 20 0 0 chr4 84159983 84160032 -71470088 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1227 235 321 0 18 chr4 84162728 84162785 -71467335 + Cheshire DNA MER1_type 2 57 -2363 1 1227 190 136 0 43 chr4 84162814 84162860 -71467260 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 1 1227 378 0 0 0 chr4 84162876 84162918 -71467202 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1227 705 276 41 18 chr4 84163019 84163237 -71466883 - ID_B1 SINE B4 0 224 2 1 1227 890 33 197 0 chr4 84163446 84163568 -71466552 + B1_Mm SINE Alu 2 147 0 1 1227 267 104 0 0 chr4 84163568 84163616 -71466504 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1227 223 266 0 30 chr4 84163626 84163692 -71466428 + CT-rich Low_complexity Low_complexity 3 66 0 1 1227 198 0 0 0 chr4 84163872 84163894 -71466226 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1227 378 0 0 0 chr4 84163894 84163935 -71466185 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1227 845 145 15 0 chr4 84164165 84164296 -71465824 + B1_Mus2 SINE Alu 9 141 -6 1 1227 318 259 53 134 chr4 84164171 84164358 -71465762 + MT2B LTR ERVL 179 350 -251 1 1227 378 114 0 0 chr4 84164472 84164542 -71465578 + (A)n Simple_repeat Simple_repeat 1 70 0 1 1227 1750 253 162 37 chr4 84165819 84166943 -71463177 + Lx6 LINE L1 5948 7434 -26 1 1227 236 264 2 52 chr4 84167477 84167571 -71462549 + RLTR25B LTR ERVK 590 754 -349 1 1227 225 171 205 26 chr4 84167528 84167606 -71462514 + PB1 SINE Alu 29 120 -7 1 1227 273 188 159 0 chr4 84170611 84170680 -71459440 + ID4_ SINE ID 2 81 -2 1 1227 25 31 0 0 chr4 84171440 84171472 -71458648 + AT_rich Low_complexity Low_complexity 1 32 0 1 1227 517 291 59 26 chr4 84171804 84171956 -71458164 - RSINE1 SINE B4 -6 159 3 1 1227 326 271 0 12 chr4 84172271 84172357 -71457763 + B4A SINE B4 4 88 -204 1 1227 292 250 167 79 chr4 84172370 84172496 -71457624 + B4A SINE B4 147 283 -9 1 1227 360 0 0 0 chr4 84172497 84172537 -71457583 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1227 432 0 0 0 chr4 84172846 84172894 -71457226 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1227 234 91 0 0 chr4 84174029 84174062 -71456058 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1 1227 363 87 29 14 chr4 84174966 84175036 -71455084 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1227 1265 27 0 0 chr4 84177493 84177640 -71452480 + B1_Mm SINE Alu 1 147 0 1 1227 360 0 0 0 chr4 84177640 84177680 -71452440 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1227 1013 88 131 0 chr4 84177680 84177840 -71452280 - B2_Mm2 SINE B2 -14 181 1 1 1227 234 0 0 0 chr4 84178161 84178187 -71451933 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1227 994 256 52 59 chr4 84179809 84180133 -71449987 + MER102b DNA MER1_type 1 322 -19 2 1227 207 0 0 0 chr4 84180899 84180922 -71449198 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1227 1087 90 0 7 chr4 84180922 84181067 -71449053 - B1_Mus2 SINE Alu -3 144 1 2 1227 210 171 0 0 chr4 84181074 84181115 -71449005 + T-rich Low_complexity Low_complexity 1 41 0 2 1227 225 311 93 29 chr4 84183142 84183281 -71446839 - Kanga11a DNA Tc2 -397 573 426 2 1227 261 0 0 0 chr4 84188917 84188946 -71441174 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1227 203 162 0 0 chr4 84189598 84189635 -71440485 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1227 198 0 0 0 chr4 84190633 84190655 -71439465 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1227 29 70 0 0 chr4 84191476 84191533 -71438587 + GC_rich Low_complexity Low_complexity 1 57 0 2 1227 22 35 0 0 chr4 84193255 84193284 -71436836 + AT_rich Low_complexity Low_complexity 1 29 0 2 1227 216 0 0 0 chr4 84194258 84194282 -71435838 + (CCTG)n Simple_repeat Simple_repeat 4 27 0 2 1227 282 211 12 50 chr4 84194286 84194393 -71435727 + CT-rich Low_complexity Low_complexity 1 102 0 2 1227 302 172 35 0 chr4 84194441 84194499 -71435621 + HAL1-3A_ME LINE L1 1966 2025 -833 2 1227 294 123 0 0 chr4 84195856 84195913 -71434207 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1227 468 0 0 0 chr4 84196739 84196791 -71433329 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1227 582 171 51 102 chr4 84196792 84196929 -71433191 - B1_Mur1 SINE Alu -19 130 1 2 1227 636 81 0 0 chr4 84197057 84197144 -71432976 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1227 29 60 0 0 chr4 84198368 84198418 -71431702 + AT_rich Low_complexity Low_complexity 1 50 0 2 1227 540 167 9 73 chr4 84198474 84198584 -71431536 - B1_Mur2 SINE Alu 0 149 47 2 1227 572 273 21 14 chr4 84198910 84199051 -71431069 + B1_Mur2 SINE Alu 8 149 0 2 1227 235 292 53 53 chr4 84199293 84199481 -71430639 + RLTR21 LTR ERVK 1064 1251 -321 2 1227 750 246 0 0 chr4 84199484 84199768 -71430352 + (TG)n Simple_repeat Simple_repeat 1 284 0 2 1227 363 286 0 0 chr4 84200853 84201031 -71429089 + (CATA)n Simple_repeat Simple_repeat 1 178 0 2 1227 22 35 0 0 chr4 84201104 84201133 -71428987 + AT_rich Low_complexity Low_complexity 1 29 0 2 1227 231 114 0 0 chr4 84201270 84201305 -71428815 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1227 201 324 126 69 chr4 84202279 84202438 -71427682 - L2b LINE L2 -9 3366 3199 2 1227 625 250 83 0 chr4 84202935 84203091 -71427029 + B3A SINE B2 4 172 -26 2 1227 1029 84 35 0 chr4 84203560 84203702 -71426418 + B1_Mm SINE Alu 1 147 0 2 1227 957 116 13 40 chr4 84203723 84203875 -71426245 + B1_Mur4 SINE Alu 2 149 -1 2 1227 233 125 18 0 chr4 84203896 84203952 -71426168 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1227 603 272 53 9 chr4 84203952 84204178 -71425942 - Lx9 LINE L1 -171 7473 7238 2 1227 338 210 25 25 chr4 84204187 84204309 -71425811 + Lx9 LINE L1 7520 7641 -3 2 1227 361 191 16 0 chr4 84204540 84204603 -71425517 + B3A SINE B2 67 130 -68 2 1227 240 163 0 0 chr4 84204607 84204650 -71425470 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2 1227 360 0 0 0 chr4 84205772 84205812 -71424308 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1227 206 32 32 0 chr4 84205837 84205868 -71424252 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1227 210 37 0 0 chr4 84207462 84207489 -71422631 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 1227 216 274 180 29 chr4 84207772 84207911 -71422209 + MIR SINE MIR 92 251 -11 2 1227 306 0 0 0 chr4 84207913 84207947 -71422173 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1227 222 37 0 0 chr4 84207947 84207973 -71422147 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1227 249 33 0 0 chr4 84207992 84208022 -71422098 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1227 568 206 0 0 chr4 84208365 84208467 -71421653 - B1_Mur2 SINE Alu -47 102 1 2 1227 317 247 37 102 chr4 84208384 84208492 -71421628 - MT2B LTR ERVL -363 238 138 2 1227 181 250 0 0 chr4 84209297 84209333 -71420787 - MIRm SINE MIR -16 260 225 2 1227 262 114 42 28 chr4 84209840 84209912 -71420208 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1227 189 0 0 0 chr4 84210196 84210217 -71419903 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1227 272 309 12 12 chr4 84210260 84210342 -71419778 - MIRb SINE MIR -89 179 98 2 1227 2082 157 62 29 chr4 84216316 84216690 -71413430 + ORR1B1 LTR MaLR 1 386 -8 2 1227 236 294 105 59 chr4 84216827 84216979 -71413141 + LTR68 LTR ERV1 222 380 -360 2 1227 22 56 0 0 chr4 84217764 84217800 -71412320 + AT_rich Low_complexity Low_complexity 1 36 0 2 1227 330 238 24 36 chr4 84218492 84218575 -71411545 - ID4_ SINE ID 0 83 2 2 1227 686 298 148 53 chr4 84218793 84219141 -71410979 - MLT1D LTR MaLR -22 445 84 2 1227 336 24 0 0 chr4 84219202 84219243 -71410877 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1227 613 314 76 40 chr4 84219260 84219509 -71410611 - B4A SINE B4 -26 266 9 2 1227 348 200 56 45 chr4 84220870 84220959 -71409161 + MER106B DNA MER1_type 54 143 -916 2 1227 231 36 0 0 chr4 84221352 84221380 -71408740 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 2 1227 270 0 0 0 chr4 84221436 84221466 -71408654 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1227 404 77 15 0 chr4 84221523 84221588 -71408532 + L1_Mus2 LINE L1 6500 6565 -1 2 1227 32 0 0 0 chr4 84221765 84221797 -71408323 + AT_rich Low_complexity Low_complexity 1 32 0 2 1227 1181 119 5 49 chr4 84221804 84222007 -71408113 + B2_Mm2 SINE B2 1 194 -1 2 1227 315 236 73 73 chr4 84222265 84222361 -71407759 + MT2B LTR ERVL 169 264 -337 2 1227 489 160 137 11 chr4 84222279 84222374 -71407746 + B1_Mur2 SINE Alu 21 127 -22 2 1227 264 273 41 91 chr4 84222291 84222412 -71407708 + RLTR25A LTR ERVK 521 635 -468 2 1227 414 237 118 35 chr4 84223456 84223600 -71406520 - MIRc SINE MIR -26 242 87 2 1227 313 294 103 58 chr4 84225053 84225295 -71404825 + ORR1E LTR MaLR 51 303 -56 2 1227 455 294 59 0 chr4 84226799 84226952 -71403168 - L3b LINE CR1 -212 270 109 2 1227 957 250 14 0 chr4 84229128 84229336 -71400784 - B3 SINE B2 -5 211 1 2 1227 195 331 62 62 chr4 84229342 84229487 -71400633 - MIRb SINE MIR -67 201 57 2 1227 378 0 0 0 chr4 84232584 84232626 -71397494 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1227 432 0 0 0 chr4 84232626 84232673 -71397447 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1227 633 204 105 0 chr4 84233625 84233777 -71396343 + B3 SINE B2 48 215 -1 2 1227 180 0 0 0 chr4 84233999 84234019 -71396101 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1227 3256 56 42 2 chr4 84234029 84234458 -71395662 - L1Md_F2 LINE L1 -11 6571 6126 2 1227 880 215 71 10 chr4 84234566 84234763 -71395357 - B3 SINE B2 -7 209 1 2 1227 1248 47 0 0 chr4 84234868 84235016 -71395104 + B1_Mus1 SINE Alu 1 148 0 2 1227 1140 55 14 0 chr4 84235090 84235235 -71394885 + B1_Mm SINE Alu 1 147 0 2 1227 261 260 180 0 chr4 84235306 84235406 -71394714 + MER5A DNA MER1_type 16 133 -56 2 1227 442 164 16 0 chr4 84236359 84236481 -71393639 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1227 266 355 9 0 chr4 84236710 84236817 -71393303 + RMER12 LTR ERVK 748 855 -467 2 1227 21 0 0 0 chr4 84236833 84236854 -71393266 + AT_rich Low_complexity Low_complexity 1 21 0 2 1227 1044 215 146 76 chr4 84237319 84237778 -71392342 - RCHARR1 DNA MER1_type 0 974 484 2 1227 1214 268 42 66 chr4 84237889 84238052 -71392068 - RCHARR1 DNA MER1_type -469 505 354 2 1227 1671 31 0 0 chr4 84238052 84238244 -71391876 + B2_Mm1a SINE B2 2 193 0 2 1227 1214 268 42 66 chr4 84238244 84238552 -71391568 - RCHARR1 DNA MER1_type -621 353 45 2 1227 1206 35 0 7 chr4 84239268 84239413 -71390707 - B1_Mus2 SINE Alu -2 145 2 2 1227 293 0 27 0 chr4 84239818 84239855 -71390265 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1227 602 290 88 74 chr4 84240881 84241097 -71389023 - ID_B1 SINE B4 -2 222 4 2 1227 21 57 0 0 chr4 84241123 84241158 -71388962 + AT_rich Low_complexity Low_complexity 1 35 0 2 1227 553 232 79 7 chr4 84241507 84241646 -71388474 - B1_Mur2 SINE Alu 0 149 1 2 1227 218 231 0 15 chr4 84242625 84242691 -71387429 + GA-rich Low_complexity Low_complexity 3 67 0 2 1227 271 215 30 30 chr4 84242926 84242993 -71387127 - Arthur1B DNA Tip100 -1093 132 66 2 1227 1110 234 119 19 chr4 84243442 84243820 -71386300 + MTD LTR MaLR 3 418 -1 2 1227 320 296 102 0 chr4 84244755 84244863 -71385257 + MIR SINE MIR 20 138 -124 2 1227 22 0 0 0 chr4 84244929 84244951 -71385169 + AT_rich Low_complexity Low_complexity 1 22 0 2 1227 384 293 191 51 chr4 84245584 84245934 -71384186 - Lx8 LINE L1 -30 7443 7045 2 1227 231 253 0 13 chr4 84246426 84246502 -71383618 + L1MC3 LINE L1 5901 5975 -1810 2 1227 1052 325 60 23 chr4 84246602 84247072 -71383048 - Tigger6a DNA MER2_type -337 746 260 2 1227 230 284 75 0 chr4 84247110 84247177 -71382943 - Tigger6a DNA MER2_type -971 112 41 2 1227 238 390 56 7 chr4 84247566 84247708 -71382412 - MIR SINE MIR -70 192 44 2 1227 315 0 0 0 chr4 84248825 84248860 -71381260 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 1227 465 19 0 0 chr4 84249981 84250035 -71380085 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2 1227 3008 184 30 56 chr4 84250098 84250958 -71379162 - Lx6 LINE L1 -1407 6053 5197 2 1227 1752 283 47 18 chr4 84250950 84251990 -71378130 + Lx6 LINE L1 6082 7434 -26 2 1227 1703 218 30 3 chr4 84252132 84252496 -71377624 + ORR1D1 LTR MaLR 1 374 0 2 1227 180 0 0 0 chr4 84253111 84253131 -71376989 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1227 23 54 0 0 chr4 84253693 84253730 -71376390 + AT_rich Low_complexity Low_complexity 1 37 0 3 1227 393 188 59 59 chr4 84253764 84253866 -71376254 - B3 SINE B2 -113 103 2 3 1227 1956 109 31 13 chr4 84254156 84254473 -71375647 + L1_Mus3 LINE L1 6314 6636 -2 3 1227 234 0 0 0 chr4 84256820 84256846 -71373274 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1227 291 114 0 0 chr4 84257200 84257244 -71372876 + (GGA)n Simple_repeat Simple_repeat 3 46 0 3 1227 531 0 0 0 chr4 84257245 84257304 -71372816 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 3 1227 925 70 16 0 chr4 84257866 84257995 -71372125 + L1_Mus1 LINE L1 6437 6567 0 3 1227 198 103 0 0 chr4 84260429 84260458 -71369662 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1227 286 312 177 0 chr4 84262388 84262529 -71367591 - MIR SINE MIR -96 166 1 3 1227 800 29 20 0 chr4 84263402 84263504 -71366616 + (GAAAA)n Simple_repeat Simple_repeat 2 105 0 3 1227 310 260 0 13 chr4 84264633 84264711 -71365409 + ID4 SINE ID 6 82 -1 3 1227 297 0 0 0 chr4 84264941 84264974 -71365146 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1227 600 70 0 0 chr4 84264974 84265059 -71365061 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1227 205 261 127 28 chr4 84265102 84265173 -71364947 - MIR SINE MIR -86 122 45 3 1227 295 284 35 118 chr4 84266437 84266665 -71363455 - RMER17C LTR ERVK -61 349 141 3 1227 252 0 0 0 chr4 84266667 84266695 -71363425 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 3 1227 290 203 141 51 chr4 84267074 84267087 -71363033 - ID SINE ID -139 85 1 3 1227 290 200 154 0 chr4 84267087 84267152 -71362968 - ID4_ SINE ID -8 75 1 3 1227 255 248 99 89 chr4 84267175 84267388 -71362732 + MT2B LTR ERVL 64 278 -323 3 1227 860 121 30 0 chr4 84267282 84267414 -71362706 + B1_Mur4 SINE Alu 15 150 0 3 1227 206 118 0 0 chr4 84267415 84267449 -71362671 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1227 33 25 0 0 chr4 84268441 84268481 -71361639 + AT_rich Low_complexity Low_complexity 1 40 0 3 1227 289 257 70 87 chr4 84268772 84268887 -71361233 + B1F1 SINE Alu 2 114 -33 3 1227 186 43 0 0 chr4 84270393 84270416 -71359704 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1227 441 0 0 0 chr4 84270771 84270820 -71359300 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1227 207 0 0 0 chr4 84270820 84270842 -71359278 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1227 733 141 30 145 chr4 84271374 84271540 -71358580 + B1_Mus1 SINE Alu 2 148 0 3 1227 386 310 92 87 chr4 84271581 84271754 -71358366 + B4A SINE B4 2 175 -117 3 1227 26 64 0 0 chr4 84271933 84271980 -71358140 + AT_rich Low_complexity Low_complexity 1 47 0 3 1227 313 250 26 0 chr4 84272063 84272139 -71357981 - MER33 DNA MER1_type -246 78 1 3 1227 346 339 9 9 chr4 84272147 84272260 -71357860 - MIR SINE MIR -34 228 116 3 1227 224 222 71 47 chr4 84272636 84272721 -71357399 + BC1_Mm scRNA scRNA 14 100 -52 3 1227 324 0 0 0 chr4 84274673 84274709 -71355411 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1227 315 0 0 0 chr4 84274709 84274743 -71355377 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1227 1292 165 14 5 chr4 84274799 84275018 -71355102 - URR1B DNA MER1_type 0 225 5 3 1227 386 302 0 0 chr4 84275904 84276000 -71354120 - RSINE1 SINE B4 -39 126 31 3 1227 354 253 13 0 chr4 84278165 84278244 -71351876 + PB1 SINE Alu 48 127 0 3 1227 207 0 0 0 chr4 84278826 84278849 -71351271 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 3 1228 608 265 213 41 chr4 84282449 84282693 -71347427 - B4A SINE B4 -6 286 1 3 1228 354 23 0 0 chr4 84283424 84283467 -71346653 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1228 30 0 0 0 chr4 84284296 84284326 -71345794 + AT_rich Low_complexity Low_complexity 1 30 0 3 1228 362 240 104 53 chr4 84285987 84286210 -71343910 + ORR1E LTR MaLR 25 270 -100 3 1228 243 211 69 17 chr4 84286391 84286449 -71343671 - B3A SINE B2 -65 133 73 3 1228 338 308 8 79 chr4 84286467 84286594 -71343526 + B3A SINE B2 81 198 0 3 1228 180 77 0 0 chr4 84286752 84286778 -71343342 + (TCCCC)n Simple_repeat Simple_repeat 2 27 0 3 1228 256 214 71 0 chr4 84286778 84286834 -71343286 - B1_Mur1 SINE Alu -16 133 74 3 1228 581 235 22 50 chr4 84286997 84287035 -71343085 + ID_B1 SINE B4 51 224 0 3 1228 1029 86 0 7 chr4 84287035 84287176 -71342944 + B1_Mus2 SINE Alu 7 146 -1 3 1228 910 302 38 34 chr4 84289037 84289328 -71340792 + B4A SINE B4 1 292 0 3 1228 297 277 10 19 chr4 84289818 84289921 -71340199 - MIR SINE MIR -36 226 125 3 1228 304 279 18 18 chr4 84289974 84290087 -71340033 + RMER12 LTR ERVK 744 856 -466 3 1228 459 0 0 0 chr4 84290113 84290164 -71339956 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 3 1228 331 261 39 40 chr4 84292270 84292413 -71337707 + B1F1 SINE Alu 4 149 0 3 1228 304 298 37 82 chr4 84292567 84292702 -71337418 - L2c LINE L2 -6 3381 3253 3 1228 3182 132 118 19 chr4 84293957 84294489 -71335631 + RMER4B LTR ERVK 1 585 0 3 1228 579 127 0 0 chr4 84294787 84294905 -71335215 + (GA)n Simple_repeat Simple_repeat 1 118 0 3 1228 1115 101 6 0 chr4 84295640 84295799 -71334321 + L1_Mus2 LINE L1 6407 6566 0 3 1228 1099 135 65 0 chr4 84296218 84296237 -71333883 - B2_Mm2 SINE B2 -13 182 164 3 1228 213 121 0 0 chr4 84296237 84296270 -71333850 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1228 1099 135 65 0 chr4 84296270 84296420 -71333700 - B2_Mm2 SINE B2 -32 163 3 3 1228 209 33 33 0 chr4 84296657 84296687 -71333433 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 3 1228 993 57 0 0 chr4 84296727 84296850 -71333270 + B1_Mus2 SINE Alu 18 140 -7 3 1228 255 31 0 0 chr4 84296856 84296888 -71333232 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1228 949 110 7 0 chr4 84296981 84297127 -71332993 + URR1B DNA MER1_type 79 225 0 3 1228 474 282 6 0 chr4 84298488 84298629 -71331491 + B4 SINE B4 77 290 -2 3 1228 557 153 19 75 chr4 84299436 84299542 -71330578 + Lx6 LINE L1 5850 5949 -1511 3 1228 1833 251 113 54 chr4 84299543 84300170 -71329950 + Lx6 LINE L1 6797 7460 0 3 1228 447 298 45 19 chr4 84300697 84300851 -71329269 + RSINE1 SINE B4 1 158 -7 3 1228 186 71 0 0 chr4 84301063 84301091 -71329029 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 3 1228 464 290 72 34 chr4 84301180 84301387 -71328733 + B4A SINE B4 78 292 0 3 1228 438 312 21 14 chr4 84302383 84302523 -71327597 - B1F SINE Alu -4 145 5 3 1228 690 307 75 9 chr4 84302623 84302837 -71327283 + B4A SINE B4 53 280 -12 3 1228 833 210 139 5 chr4 84304074 84304261 -71325859 - ID_B1 SINE B4 0 224 13 3 1228 8641 125 16 11 chr4 84304505 84306043 -71324077 + L1_Mus4 LINE L1 4450 5987 -649 3 1228 423 0 0 0 chr4 84307578 84307625 -71322495 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1228 198 0 0 0 chr4 84307701 84307723 -71322397 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1228 482 46 0 15 chr4 84307789 84307855 -71322265 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1228 269 26 26 0 chr4 84308130 84308168 -71321952 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1228 236 309 0 14 chr4 84308206 84308229 -71321891 + ID_B1 SINE B4 130 197 -27 3 1228 241 239 0 0 chr4 84308229 84308275 -71321845 + B1F SINE Alu 74 119 -30 3 1228 526 191 17 9 chr4 84308528 84308644 -71321476 - URR1B DNA MER1_type 0 225 109 3 1228 1728 255 118 82 chr4 84308649 84309604 -71320516 - Lx5 LINE L1 0 7050 6040 3 1228 632 202 9 0 chr4 84309613 84309722 -71320398 - URR1B DNA MER1_type -114 111 2 3 1228 311 210 16 0 chr4 84310022 84310084 -71320036 - AluG_3 SINE Alu -97 214 152 3 1228 663 160 57 25 chr4 84310217 84310339 -71319781 - B1_Mur4 SINE Alu 0 150 25 3 1228 224 214 70 18 chr4 84311101 84311158 -71318962 + B4 SINE B4 14 73 -219 3 1228 23 0 0 0 chr4 84311224 84311247 -71318873 + AT_rich Low_complexity Low_complexity 1 23 0 3 1228 639 241 3 36 chr4 84312230 84312466 -71317654 + L1M3 LINE L1 5108 5342 -900 3 1228 418 248 86 0 chr4 84312523 84312640 -71317480 + PB1 SINE Alu 1 127 0 3 1228 350 287 84 81 chr4 84312770 84313043 -71317077 + L1M3 LINE L1 5409 5682 -489 3 1228 234 260 0 0 chr4 84313034 84313084 -71317036 + L1MB8 LINE L1 5041 5090 -1056 3 1228 473 247 19 73 chr4 84313275 84313480 -71316640 + L1MB8 LINE L1 5112 5305 -841 3 1228 464 228 22 0 chr4 84313484 84313576 -71316544 + RSINE1 SINE B4 3 96 -69 3 1228 216 0 0 0 chr4 84313645 84313669 -71316451 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1228 264 248 108 18 chr4 84313720 84313831 -71316289 + L1MB8 LINE L1 5601 5721 -457 3 1228 241 207 85 0 chr4 84313870 84313952 -71316168 + L1MB8 LINE L1 6088 6176 -2 3 1228 783 273 20 5 chr4 84314223 84314422 -71315698 - B4 SINE B4 -89 203 2 3 1228 199 0 65 0 chr4 84317003 84317034 -71313086 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1228 198 0 0 0 chr4 84318050 84318072 -71312048 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1228 25 0 0 0 chr4 84320454 84320479 -71309641 + GC_rich Low_complexity Low_complexity 1 25 0 3 1228 201 121 0 0 chr4 84320657 84320690 -71309430 + (CCCG)n Simple_repeat Simple_repeat 4 36 0 3 1228 29 28 0 0 chr4 84320790 84320826 -71309294 + GC_rich Low_complexity Low_complexity 1 36 0 3 1228 260 232 0 34 chr4 84320946 84321068 -71309052 + C-rich Low_complexity Low_complexity 1 117 0 3 1228 26 64 0 0 chr4 84321214 84321261 -71308859 + GC_rich Low_complexity Low_complexity 1 47 0 3 1228 195 42 0 0 chr4 84322519 84322543 -71307577 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1228 1022 170 181 0 chr4 84323400 84323588 -71306532 + URR1B DNA MER1_type 1 222 -3 3 1228 368 323 76 76 chr4 84324103 84324170 -71305950 + Charlie1b DNA MER1_type 15 81 -442 3 1228 221 0 35 0 chr4 84324170 84324199 -71305921 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1228 1213 58 0 0 chr4 84324200 84324338 -71305782 - B1_Mus2 SINE Alu -8 139 2 4 1228 368 323 76 76 chr4 84324338 84324543 -71305577 + Charlie1b DNA MER1_type 82 289 -234 3 1228 403 279 181 50 chr4 84324584 84324944 -71305176 - MLT1D LTR MaLR -2 503 97 4 1228 1052 30 0 29 chr4 84325664 84325800 -71304320 + B1_Mus2 SINE Alu 16 147 0 4 1228 291 265 216 0 chr4 84325891 84325993 -71304127 - MER99 DNA hAT? -12 819 696 4 1228 635 217 133 38 chr4 84326089 84326300 -71303820 - MER99 DNA hAT? -305 526 296 4 1228 1051 54 5 0 chr4 84326447 84326584 -71303536 + B1_Mus2 SINE Alu 1 141 -6 4 1228 475 246 23 15 chr4 84327184 84327316 -71302804 - RLTR42-int LTR ERVK -1295 4227 4095 4 1228 366 235 0 23 chr4 84327374 84327461 -71302659 - RLTR42-int LTR ERVK -1426 4096 4012 4 1228 424 262 0 10 chr4 84327670 84327774 -71302346 - RLTR42-int LTR ERVK -2548 2974 2872 4 1228 573 287 0 0 chr4 84327897 84328012 -71302108 - B1F SINE Alu -32 117 3 4 1228 419 242 38 69 chr4 84328063 84328223 -71301897 + MLT1A1 LTR MaLR 1 155 -253 4 1228 232 277 118 10 chr4 84328398 84328500 -71301620 - MER99 DNA hAT? -718 113 1 4 1228 231 331 144 13 chr4 84330995 84331148 -71298972 - MIRb SINE MIR -76 192 20 4 1228 29 28 0 0 chr4 84331436 84331472 -71298648 + AT_rich Low_complexity Low_complexity 1 36 0 4 1228 229 336 178 7 chr4 84332141 84332276 -71297844 - L2a LINE L2 -31 3395 3238 4 1228 522 0 0 0 chr4 84332588 84332646 -71297474 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1228 270 336 66 59 chr4 84332919 84333071 -71297049 + MIR3 SINE MIR 1 153 -123 4 1228 383 239 52 17 chr4 84333486 84333601 -71296519 + PB1D7 SINE Alu 1 119 -1 4 1228 21 36 0 0 chr4 84333844 84333872 -71296248 + AT_rich Low_complexity Low_complexity 1 28 0 4 1228 188 275 86 14 chr4 84333926 84333996 -71296124 - MER5A DNA MER1_type -6 183 109 4 1228 1385 196 89 9 chr4 84334135 84334494 -71295626 + MTC LTR MaLR 2 414 -7 4 1228 351 0 0 0 chr4 84334812 84334851 -71295269 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1228 714 154 73 0 chr4 84334851 84334974 -71295146 - B1_Mur4 SINE Alu -17 133 2 4 1228 534 335 118 11 chr4 84335399 84335671 -71294449 - MLT1A0 LTR MaLR -4 361 61 4 1228 238 339 0 0 chr4 84335738 84335797 -71294323 - PB1 SINE Alu -28 99 41 4 1228 207 0 0 0 chr4 84335814 84335837 -71294283 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1228 261 0 0 0 chr4 84336004 84336033 -71294087 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1228 442 285 34 27 chr4 84336074 84336222 -71293898 - B1F2 SINE Alu 0 149 1 4 1228 210 105 0 0 chr4 84336533 84336571 -71293549 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1228 680 273 77 9 chr4 84337027 84337249 -71292871 - Lx9 LINE L1 -679 6965 6729 4 1228 253 293 24 24 chr4 84337278 84337362 -71292758 + PB1 SINE Alu 8 91 -36 4 1228 239 73 49 0 chr4 84337878 84337919 -71292201 + (TCTCTG)n Simple_repeat Simple_repeat 1 43 0 4 1228 231 313 199 0 chr4 84337989 84338120 -71292000 + L1MC LINE L1 5579 5735 -2147 4 1228 502 181 105 11 chr4 84338121 84338216 -71291904 + B1_Mur4 SINE Alu 1 104 -16 4 1228 213 226 0 0 chr4 84338217 84338301 -71291819 + G-rich Low_complexity Low_complexity 1 84 0 4 1228 1458 224 114 26 chr4 84339313 84339698 -71290422 + MTD LTR MaLR 1 419 0 4 1228 524 317 52 36 chr4 84339738 84339990 -71290130 + MLT1H LTR MaLR 66 321 -228 4 1228 387 41 0 0 chr4 84341682 84341731 -71288389 + (CATCC)n Simple_repeat Simple_repeat 3 51 0 4 1228 1313 239 72 41 chr4 84341744 84342107 -71288013 + ORR1D1 LTR MaLR 1 374 0 4 1228 180 0 0 0 chr4 84342454 84342474 -71287646 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 4 1228 190 246 76 15 chr4 84342653 84342719 -71287401 + L2b LINE L2 3304 3373 -2 4 1228 489 212 6 175 chr4 84343021 84343198 -71286922 + B1F2 SINE Alu 1 147 -2 4 1228 25 0 0 0 chr4 84343200 84343225 -71286895 + AT_rich Low_complexity Low_complexity 1 25 0 4 1228 1016 129 7 0 chr4 84343281 84343421 -71286699 - B1_Mus1 SINE Alu -7 141 1 4 1228 279 0 0 0 chr4 84345028 84345059 -71285061 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1228 5015 142 65 68 chr4 84345828 84346732 -71283388 - RMER19B LTR ERVK 0 902 1 4 1228 745 141 65 32 chr4 84347079 84347233 -71282887 + B2_Mm2 SINE B2 19 177 -18 4 1228 1407 259 50 6 chr4 84347451 84347793 -71282327 + ORR1E LTR MaLR 3 359 0 4 1228 1271 54 0 0 chr4 84347944 84348091 -71282029 - B1_Mus2 SINE Alu 0 147 1 4 1228 1442 228 44 65 chr4 84348462 84348847 -71281273 + RMER1B Other Other 35 411 -655 4 1228 239 215 0 15 chr4 84348856 84348922 -71281198 + GA-rich Low_complexity Low_complexity 3 67 0 4 1228 303 321 0 0 chr4 84348970 84349051 -71281069 - ID4_ SINE ID 0 83 3 4 1228 304 296 0 0 chr4 84349248 84349264 -71280856 + B4 SINE B4 70 85 -207 4 1228 388 262 0 97 chr4 84349264 84349378 -71280742 + B1F2 SINE Alu 1 103 -46 4 1228 494 295 87 29 chr4 84349358 84349564 -71280556 - MER57E1 LTR ERV1 -14 358 141 4 1228 298 290 0 0 chr4 84349597 84349659 -71280461 - MER57E1 LTR ERV1 -301 71 10 4 1228 225 0 0 0 chr4 84349667 84349692 -71280428 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 1228 432 0 0 0 chr4 84350046 84350094 -71280026 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1228 237 211 0 0 chr4 84350094 84350132 -71279988 + tRNA-Ala-GCY_ tRNA tRNA 33 70 -5 4 1228 288 0 0 0 chr4 84351714 84351746 -71278374 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1228 650 292 94 91 chr4 84353479 84353765 -71276355 + B4A SINE B4 2 288 -4 4 1228 1468 136 42 4 chr4 84354789 84355025 -71275095 + Lx5 LINE L1 5631 5875 -1175 4 1228 2816 193 58 6 chr4 84355026 84355551 -71274569 + Lx5 LINE L1 6480 7034 -16 4 1228 528 16 0 0 chr4 84355551 84355612 -71274508 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 4 1228 293 276 0 0 chr4 84356126 84356184 -71273936 + PB1D10 SINE Alu 14 71 -46 4 1228 313 211 66 0 chr4 84356257 84356333 -71273787 + MER5A DNA MER1_type 1 81 -108 4 1228 346 179 29 15 chr4 84356334 84356402 -71273718 + ID4 SINE ID 4 72 -11 4 1228 234 0 0 0 chr4 84356517 84356543 -71273577 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1228 273 57 0 0 chr4 84358176 84358211 -71271909 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1228 393 22 0 0 chr4 84358211 84358256 -71271864 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1228 615 331 31 17 chr4 84358323 84358612 -71271508 - Lx8 LINE L1 -217 7256 6964 4 1228 1881 97 75 0 chr4 84359923 84360202 -71269918 - ORR1A2 LTR MaLR 0 327 28 4 1228 1163 315 105 22 chr4 84360261 84360997 -71269123 - Lx9 LINE L1 -27 7617 6821 4 1228 5401 224 54 71 chr4 84361030 84362307 -71267813 - L1_Rod LINE L1 -1701 4146 2915 4 1228 315 0 0 0 chr4 84362307 84362342 -71267778 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1228 5401 224 54 71 chr4 84362342 84362833 -71267287 - L1_Rod LINE L1 -2933 2914 2407 4 1228 1369 231 110 6 chr4 84362833 84362956 -71267164 - ORR1D2 LTR MaLR -4 366 235 4 1228 415 29 97 10 chr4 84362956 84363059 -71267061 + (CAGG)n Simple_repeat Simple_repeat 4 115 0 4 1228 1369 231 110 6 chr4 84363059 84363262 -71266858 - ORR1D2 LTR MaLR -136 234 8 4 1228 256 172 52 0 chr4 84363268 84363326 -71266794 - L1_Rod LINE L1 -3441 2406 2346 4 1228 238 279 33 0 chr4 84364330 84364391 -71265729 - B1F SINE Alu -86 63 1 4 1228 1140 252 115 30 chr4 84364419 84364750 -71265370 - MTEa LTR MaLR -20 359 1 4 1228 285 276 97 68 chr4 84364779 84364938 -71265182 - MTE2a LTR MaLR -4 375 200 4 1228 2756 67 3 3 chr4 84365063 84365425 -71264695 - MTB LTR MaLR -38 362 1 4 1228 1620 189 0 0 chr4 84365445 84365726 -71264394 - Lx9 LINE L1 -442 7202 6922 4 1228 763 197 166 0 chr4 84365725 84366109 -71264011 + Lx9 LINE L1 7172 7643 -1 4 1228 4761 34 0 0 chr4 84366145 84366670 -71263450 + L1Md_T LINE L1 6058 6582 0 4 1228 280 276 9 54 chr4 84366692 84366803 -71263317 - MTE-int LTR MaLR -275 1305 1200 4 1228 271 201 397 0 chr4 84367178 84367273 -71262847 + PB1D10 SINE Alu 11 140 -9 4 1228 248 222 14 14 chr4 84367299 84367372 -71262748 + L1MA8 LINE L1 3031 3103 -3040 4 1228 435 190 0 93 chr4 84367535 84367686 -71262434 + L1MA8 LINE L1 3229 3365 -2775 4 1228 810 281 61 30 chr4 84367686 84367793 -71262327 + B4A SINE B4 53 167 -125 4 1228 1973 152 74 26 chr4 84367793 84368143 -71261977 + ORR1B2 LTR MaLR 1 367 0 4 1228 810 281 61 30 chr4 84368143 84368266 -71261854 + B4A SINE B4 168 290 -2 4 1228 1558 227 125 46 chr4 84368268 84368874 -71261246 + L1MA8 LINE L1 5436 6089 -202 4 1228 1143 207 23 79 chr4 84368875 84369292 -71260828 + MT2A LTR ERVL 2 500 -84 4 1228 313 156 0 25 chr4 84369292 84369371 -71260749 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1228 324 50 0 0 chr4 84369378 84369438 -71260682 + MT2A LTR ERVL 469 528 -5 4 1228 382 272 92 6 chr4 84369438 84369601 -71260519 + L1MA8 LINE L1 6088 6264 -27 4 1228 1546 151 0 4 chr4 84369657 84369884 -71260236 + URR1A DNA MER1_type 1 226 0 4 1228 298 196 9 36 chr4 84370264 84370375 -71259745 + CT-rich Low_complexity Low_complexity 1 108 0 4 1228 351 291 90 21 chr4 84370375 84370519 -71259601 - HAL1-3A_ME LINE L1 -421 2437 2284 4 1228 311 222 73 12 chr4 84370700 84370782 -71259338 - PB1D10 SINE Alu 0 117 31 4 1228 195 42 0 0 chr4 84370885 84370909 -71259211 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1228 235 135 0 0 chr4 84371467 84371504 -71258616 + L1MB7 LINE L1 4622 4658 -1488 4 1228 228 157 216 0 chr4 84371519 84371570 -71258550 + L1MB7 LINE L1 4632 4693 -1447 4 1228 526 243 156 68 chr4 84371564 84372019 -71258101 + L1MB7 LINE L1 4812 5306 -840 4 1228 277 121 32 79 chr4 84372156 84372219 -71257901 + ID_B1 SINE B4 160 219 -5 4 1228 399 323 36 5 chr4 84372281 84372474 -71257646 + L1M1 LINE L1 5368 5566 -734 4 1228 1540 228 58 70 chr4 84372484 84372556 -71257564 + MTD LTR MaLR 14 82 -337 4 1228 1584 72 0 0 chr4 84372556 84372750 -71257370 + L1_Mus1 LINE L1 6374 6567 0 4 1228 1540 228 58 70 chr4 84372750 84372803 -71257317 + MTD LTR MaLR 83 118 -301 4 1228 233 57 29 0 chr4 84372803 84372838 -71257282 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 4 1228 1540 228 58 70 chr4 84372838 84373108 -71257012 + MTD LTR MaLR 119 405 -14 4 1228 920 311 67 35 chr4 84373171 84373664 -71256456 + L1MB7 LINE L1 5674 6182 -2 4 1228 332 261 0 0 chr4 84373815 84373880 -71256240 - ID4 SINE ID -16 67 3 4 1228 426 310 22 45 chr4 84375280 84375370 -71254750 - L1ME4a LINE L1 -209 5915 5831 4 1228 530 274 178 32 chr4 84375370 84375589 -71254531 - MIR SINE MIR -10 252 2 4 1228 426 310 22 45 chr4 84375589 84375721 -71254399 - L1ME4a LINE L1 -294 5830 5699 4 1228 2507 289 160 42 chr4 84375752 84376579 -71253541 - L1M4 LINE L1 -771 5375 4398 4 1228 661 80 45 0 chr4 84376579 84376691 -71253429 - L1_Mus3 LINE L1 0 6638 6522 5 1228 2507 289 160 42 chr4 84376691 84377516 -71252604 - L1M4 LINE L1 -1749 4397 3529 4 1228 23 33 0 0 chr4 84377784 84377814 -71252306 + AT_rich Low_complexity Low_complexity 1 30 0 5 1228 698 125 0 0 chr4 84378379 84378483 -71251637 - B1_Mur4 SINE Alu -20 130 27 5 1228 462 291 73 20 chr4 84381262 84381413 -71248707 + RMER15 LTR ERVL 347 505 -70 5 1228 407 316 97 80 chr4 84381495 84381856 -71248264 - Zaphod DNA Tip100 -3346 685 319 5 1228 285 29 0 0 chr4 84382042 84382076 -71248044 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1228 239 301 27 0 chr4 84382079 84382152 -71247968 - ID4 SINE ID -5 78 4 5 1228 24 0 0 0 chr4 84383060 84383084 -71247036 + AT_rich Low_complexity Low_complexity 1 24 0 5 1228 180 167 0 0 chr4 84383703 84383751 -71246369 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 5 1228 602 150 38 4 chr4 84383806 84383997 -71246123 + (TAGA)n Simple_repeat Simple_repeat 1 197 0 5 1228 1221 69 7 0 chr4 84383997 84384142 -71245978 + B1_Mus1 SINE Alu 1 146 -2 5 1228 491 0 0 17 chr4 84384142 84384202 -71245918 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1228 402 184 41 6 chr4 84384202 84384401 -71245719 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 5 1228 1447 61 6 19 chr4 84385215 84385584 -71244536 + (TTCTCC)n Simple_repeat Simple_repeat 1 363 0 5 1228 443 200 238 0 chr4 84385865 84385970 -71244150 + B1F SINE Alu 13 142 -7 5 1228 235 314 0 28 chr4 84386143 84386215 -71243905 + L2c LINE L2 3266 3335 -52 5 1228 507 288 52 7 chr4 84386246 84386400 -71243720 - B3A SINE B2 -35 163 3 5 1228 547 108 0 21 chr4 84386685 84386780 -71243340 + (GGA)n Simple_repeat Simple_repeat 2 94 0 5 1228 246 294 26 36 chr4 84386985 84387098 -71243022 - PB1 SINE Alu -1 116 2 5 1228 224 237 95 76 chr4 84387008 84387113 -71243007 - ID_B1 SINE B4 -48 176 70 5 1228 302 266 0 0 chr4 84387933 84388012 -71242108 + (TATG)n Simple_repeat Simple_repeat 2 80 0 5 1228 1198 263 52 0 chr4 84388023 84388293 -71241827 - B4A SINE B4 -7 285 2 5 1228 995 256 43 29 chr4 84388340 84388766 -71241354 - L1M3 LINE L1 -721 5447 5009 5 1228 445 325 69 20 chr4 84388801 84389005 -71241115 - B4 SINE B4 0 292 79 5 1228 414 267 37 7 chr4 84389071 84389207 -71240913 - L1M3 LINE L1 -1199 4941 4802 5 1228 228 343 40 0 chr4 84389910 84390009 -71240111 - MIRc SINE MIR -107 161 59 5 1228 695 244 19 81 chr4 84390292 84390502 -71239618 + B3A SINE B2 2 198 0 5 1228 376 167 15 0 chr4 84391431 84391497 -71238623 + ID4_ SINE ID 2 68 -15 5 1228 267 255 147 11 chr4 84391932 84392027 -71238093 + PB1D10 SINE Alu 1 108 -9 5 1228 25 51 0 0 chr4 84392801 84392840 -71237280 + AT_rich Low_complexity Low_complexity 1 39 0 5 1228 303 237 0 0 chr4 84393030 84393089 -71237031 + L1MEg LINE L1 1882 1940 -4144 5 1228 267 103 0 0 chr4 84393541 84393580 -71236540 + (TTA)n Simple_repeat Simple_repeat 3 41 0 5 1228 222 356 33 0 chr4 84394755 84394845 -71235275 - L2c LINE L2 -6 3381 3289 5 1228 1072 208 20 0 chr4 84394939 84395141 -71234979 + B3 SINE B2 3 208 -8 5 1228 219 69 0 0 chr4 84395142 84395171 -71234949 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1228 270 0 0 0 chr4 84395298 84395328 -71234792 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1228 5461 199 93 8 chr4 84395333 84396542 -71233578 + Lx9 LINE L1 6327 7638 -6 5 1228 31 44 0 0 chr4 84396646 84396691 -71233429 + AT_rich Low_complexity Low_complexity 1 45 0 5 1228 292 127 96 48 chr4 84398233 84398316 -71231804 - RMER10A LTR ERVL -268 174 88 5 1228 191 88 29 0 chr4 84399324 84399358 -71230762 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 5 1228 405 0 0 0 chr4 84399468 84399513 -71230607 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1228 186 71 0 0 chr4 84399655 84399683 -71230437 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1228 714 327 69 66 chr4 84401168 84401817 -71228303 - L1ME1 LINE L1 -2 6177 5527 5 1228 902 274 106 32 chr4 84402056 84402425 -71227695 + L1MB2 LINE L1 5775 6170 -1 5 1228 498 248 22 37 chr4 84403313 84403447 -71226673 - B1F SINE Alu -8 141 10 5 1228 345 274 67 103 chr4 84406771 84406995 -71223125 - MIR SINE MIR 0 262 47 5 1228 2018 176 80 3 chr4 84407574 84407961 -71222159 + MTD LTR MaLR 1 417 -2 5 1228 234 247 0 0 chr4 84408081 84408154 -71221966 + A-rich Low_complexity Low_complexity 1 73 0 5 1228 353 321 41 42 chr4 84408196 84408556 -71221564 + MLT1E3 LTR MaLR 155 572 -52 5 1228 540 30 0 0 chr4 84408688 84408754 -71221366 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 1228 193 351 70 0 chr4 84409071 84409185 -71220935 + L2b LINE L2 3233 3354 -21 5 1228 599 277 13 0 chr4 84409311 84409466 -71220654 + B3A SINE B2 42 198 0 5 1228 293 247 11 86 chr4 84409537 84409630 -71220490 - PB1 SINE Alu -36 91 6 5 1228 479 299 0 15 chr4 84409731 84409867 -71220253 + RSINE1 SINE B4 10 143 -22 5 1228 893 288 33 8 chr4 84410077 84410322 -71219798 - B4 SINE B4 -41 251 1 5 1229 274 320 118 16 chr4 84410374 84410501 -71219619 + ORR1E LTR MaLR 1 140 -219 5 1229 332 286 57 0 chr4 84410742 84410847 -71219273 - PB1D10 SINE Alu -6 111 1 5 1229 823 229 52 33 chr4 84411344 84411556 -71218564 - B3 SINE B2 0 216 1 5 1229 582 258 64 25 chr4 84411578 84411781 -71218339 - B3 SINE B2 -5 211 1 5 1229 198 128 0 0 chr4 84413148 84413187 -71216933 + (CATG)n Simple_repeat Simple_repeat 3 41 0 5 1229 200 294 137 38 chr4 84415244 84415375 -71214745 - L2a LINE L2 -1 3425 3282 5 1229 609 158 40 32 chr4 84415907 84416019 -71214101 + B1_Mur1 SINE Alu 25 136 -13 5 1229 212 0 36 0 chr4 84416019 84416047 -71214073 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 5 1229 609 158 40 32 chr4 84416047 84416058 -71214062 + B1_Mur1 SINE Alu 137 149 0 5 1229 414 0 0 0 chr4 84416353 84416399 -71213721 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1229 498 252 7 0 chr4 84416489 84416624 -71213496 - B4 SINE B4 -156 136 1 5 1229 393 287 14 27 chr4 84416704 84416851 -71213269 + LTR16B LTR ERVL 265 409 -54 5 1229 351 0 0 0 chr4 84417205 84417244 -71212876 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1229 297 0 0 0 chr4 84417244 84417276 -71212844 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1229 659 0 0 122 chr4 84417628 84417914 -71212206 + (GGGTG)n Simple_repeat Simple_repeat 1 251 0 5 1229 352 303 60 33 chr4 84417937 84418087 -71212033 + HERV16-int LTR ERVL 691 844 -4152 5 1229 312 298 112 8 chr4 84418164 84418289 -71211831 + HERV16-int LTR ERVL 942 1079 -3917 5 1229 237 65 0 0 chr4 84419051 84419082 -71211038 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 5 1229 180 0 0 0 chr4 84419806 84419826 -71210294 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1229 793 279 60 60 chr4 84420450 84420850 -71209270 - Charlie4a DNA MER1_type -40 468 69 5 1229 181 326 0 0 chr4 84423922 84423968 -71206152 + MIR SINE MIR 1 46 -216 5 1229 316 259 63 27 chr4 84424351 84424462 -71205658 + MIR SINE MIR 116 230 -32 5 1229 478 313 118 43 chr4 84424648 84425050 -71205070 + MLT2B4 LTR ERVL 9 469 -51 5 1229 833 287 61 18 chr4 84426563 84426585 -71203535 - B4A SINE B4 0 292 271 5 1229 261 0 0 0 chr4 84426585 84426614 -71203506 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1229 833 287 61 18 chr4 84426614 84426871 -71203249 - B4A SINE B4 -22 270 2 5 1229 319 292 25 25 chr4 84426921 84427083 -71203037 - L1MA4 LINE L1 -369 5931 5783 5 1229 2091 275 73 7 chr4 84427200 84427877 -71202243 - Lx5 LINE L1 -76 6974 6455 5 1229 592 289 39 0 chr4 84427877 84428057 -71202063 - L1MA4 LINE L1 -712 5591 5405 5 1229 565 286 94 13 chr4 84428062 84428278 -71201842 - ORR1E LTR MaLR -3 376 113 5 1229 1570 145 11 84 chr4 84428278 84428625 -71201495 - RLTRETN_Mm LTR ERVK 0 322 1 5 1229 565 259 121 18 chr4 84428625 84428722 -71201398 - ORR1E LTR MaLR -247 112 8 5 1229 307 279 57 0 chr4 84428730 84428870 -71201250 - L1MA4 LINE L1 -891 5406 5259 5 1229 1219 131 10 5 chr4 84428874 84429074 -71201046 - URR1A DNA MER1_type -4 222 22 5 1229 22 35 0 0 chr4 84429321 84429350 -71200770 + AT_rich Low_complexity Low_complexity 1 29 0 5 1229 321 287 45 50 chr4 84429417 84429595 -71200525 + MIR SINE MIR 34 209 -59 5 1229 257 221 10 148 chr4 84430937 84431038 -71199082 + MT2A LTR ERVL 7 93 -440 5 1229 671 232 150 19 chr4 84430950 84431270 -71198850 + MTD LTR MaLR 18 418 -1 5 1229 279 225 240 48 chr4 84431281 84431510 -71198610 - B4 SINE B4 -18 274 2 5 1229 229 373 80 7 chr4 84433750 84433901 -71196219 + L2 LINE L2 2701 2862 -557 5 1229 411 337 8 1 chr4 84434541 84434716 -71195404 - MER58A DNA MER1_type -16 208 32 5 1229 797 227 289 33 chr4 84434847 84435247 -71194873 - RLTR28B LTR ERVL -14 510 9 5 1229 444 163 287 0 chr4 84436139 84436169 -71193951 + URR1A DNA MER1_type 59 88 -138 5 1229 414 0 0 0 chr4 84436169 84436215 -71193905 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1229 444 163 287 0 chr4 84436215 84436313 -71193807 + URR1A DNA MER1_type 89 223 -3 5 1229 321 270 0 34 chr4 84436532 84436651 -71193469 - BC1_Mm scRNA scRNA -37 115 1 5 1229 517 253 130 16 chr4 84436671 84436856 -71193264 - L1MA4A LINE L1 -368 5935 5730 5 1229 579 279 74 32 chr4 84437057 84437246 -71192874 + B3A SINE B2 1 197 -1 5 1229 412 278 50 41 chr4 84437965 84438207 -71191913 + L1ME3B LINE L1 5361 5620 -559 5 1229 328 259 72 46 chr4 84438486 84438680 -71191440 + L1ME3B LINE L1 6004 6202 -38 5 1229 188 399 8 0 chr4 84438794 84438927 -71191193 + MIRb SINE MIR 127 260 -8 5 1229 282 339 27 0 chr4 84439863 84439975 -71190145 + L2a LINE L2 3312 3426 0 5 1229 1268 204 109 27 chr4 84440298 84440554 -71189566 - MTD LTR MaLR -17 402 119 5 1229 405 0 0 0 chr4 84440554 84440599 -71189521 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1229 1268 204 109 27 chr4 84440599 84440710 -71189410 - MTD LTR MaLR -301 118 5 5 1229 1049 64 57 0 chr4 84440941 84441081 -71189039 + B1_Mus1 SINE Alu 1 148 0 5 1229 939 272 52 57 chr4 84441182 84441688 -71188432 + L1MA4 LINE L1 5496 5971 -1725 5 1229 281 314 67 8 chr4 84441955 84442074 -71188046 + RMER15 LTR ERVL 346 471 -104 6 1229 486 0 0 0 chr4 84442396 84442450 -71187670 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1229 414 0 0 0 chr4 84442450 84442495 -71187625 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1229 514 211 174 26 chr4 84442683 84442878 -71187242 + L1_Rod LINE L1 5175 5398 -449 6 1229 551 271 0 8 chr4 84442886 84443016 -71187104 - B1F1 SINE Alu -20 129 1 6 1229 491 0 17 0 chr4 84443491 84443550 -71186570 + (TTATA)n Simple_repeat Simple_repeat 3 62 0 6 1229 467 134 12 0 chr4 84443796 84443878 -71186242 + (TCC)n Simple_repeat Simple_repeat 3 85 0 6 1229 579 29 0 0 chr4 84443886 84443955 -71186165 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1229 935 330 41 83 chr4 84445124 84445607 -71184513 - Lx8 LINE L1 -144 7329 6842 6 1229 432 0 0 0 chr4 84445607 84445655 -71184465 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1229 935 330 41 83 chr4 84445655 84445855 -71184265 - Lx8 LINE L1 -632 6841 6675 6 1229 448 232 63 25 chr4 84445856 84446015 -71184105 + Lx2B LINE L1 6833 6997 -3 6 1229 1073 321 48 27 chr4 84446018 84446478 -71183642 - Lx8 LINE L1 -800 6673 6201 6 1229 360 0 0 0 chr4 84446478 84446518 -71183602 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1229 1073 321 48 27 chr4 84446518 84446541 -71183579 - Lx8 LINE L1 -1273 6200 6180 6 1229 470 262 98 0 chr4 84447256 84447378 -71182742 + B1F SINE Alu 15 148 -1 6 1229 378 0 0 0 chr4 84448070 84448112 -71182008 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1229 441 281 7 22 chr4 84448117 84448255 -71181865 + B1_Mus2 SINE Alu 3 138 -9 6 1229 446 310 75 45 chr4 84448253 84448587 -71181533 + Kanga1b DNA Tc2 423 766 -13 6 1229 3011 196 78 5 chr4 84448831 84449482 -71180638 - Lx9 LINE L1 -640 7004 6306 6 1229 6959 94 26 11 chr4 84449549 84450752 -71179368 + Lx LINE L1 5429 6649 -5 6 1229 493 212 26 17 chr4 84450823 84450938 -71179182 - MTE2b LTR MaLR -253 126 11 6 1229 389 313 133 94 chr4 84452741 84452974 -71177146 - B4 SINE B4 -50 242 1 6 1229 432 353 75 62 chr4 84453220 84453415 -71176705 - LTR16E2 LTR ERVL -1 567 375 6 1229 1206 256 63 19 chr4 84453415 84453778 -71176342 + MTE2a LTR MaLR 1 379 0 6 1229 432 353 75 62 chr4 84453778 84453887 -71176233 - LTR16E2 LTR ERVL -194 374 259 6 1229 189 0 0 0 chr4 84453985 84454006 -71176114 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1229 187 371 32 8 chr4 84454246 84454371 -71175749 - L2 LINE L2 -1324 2095 1968 6 1229 1119 289 27 20 chr4 84455429 84455835 -71174285 + Lx8 LINE L1 6918 7326 -147 6 1229 287 247 0 0 chr4 84456009 84456082 -71174038 + A-rich Low_complexity Low_complexity 6 78 0 6 1229 302 289 124 15 chr4 84456155 84456386 -71173734 - L1MB8 LINE L1 -42 6142 5887 6 1229 242 271 172 50 chr4 84456434 84456737 -71173383 + L1ME4a LINE L1 5598 5937 -187 6 1229 745 295 100 77 chr4 84456848 84457329 -71172791 - LTR48B LTR ERV1 -21 623 132 6 1229 1258 262 41 47 chr4 84457335 84457676 -71172444 - ORR1E LTR MaLR -20 339 1 6 1229 392 180 18 26 chr4 84458034 84458148 -71171972 + CT-rich Low_complexity Low_complexity 4 116 0 6 1229 279 0 0 0 chr4 84458181 84458212 -71171908 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1229 250 263 70 0 chr4 84458214 84458271 -71171849 - ID4_ SINE ID -11 72 12 6 1229 813 241 180 53 chr4 84458509 84458626 -71171494 + MTC LTR MaLR 8 133 -288 6 1229 396 0 0 0 chr4 84458626 84458670 -71171450 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1229 813 241 180 53 chr4 84458670 84458907 -71171213 + MTC LTR MaLR 134 406 -15 6 1229 533 248 39 0 chr4 84459053 84459182 -71170938 + B3 SINE B2 74 207 -9 6 1229 684 269 34 78 chr4 84459272 84459478 -71170642 - B3A SINE B2 -1 197 1 6 1229 1386 109 27 0 chr4 84459796 84460016 -71170104 - Lx LINE L1 0 6654 6429 6 1229 2355 171 24 0 chr4 84460018 84460475 -71169645 - L1_Mm LINE L1 -317 5566 5099 6 1229 32775 62 7 16 chr4 84460463 84461794 -71168326 - L1Md_F2 LINE L1 -2 6580 5267 6 1229 6472 59 4 21 chr4 84461794 84462631 -71167489 - RLTR13B2 LTR ERVK 0 822 1 6 1229 32775 71 5 14 chr4 84462631 84465528 -71164592 - L1Md_F2 LINE L1 -617 5266 2407 6 1229 4018 43 0 14 chr4 84465528 84466017 -71164103 + LTRIS_Mm LTR ERV1 1 482 0 6 1229 32775 78 10 8 chr4 84466017 84468074 -71162046 - L1Md_F2 LINE L1 -3477 2406 334 6 1229 488 192 0 0 chr4 84468065 84468164 -71161956 - L1_Mur1 LINE L1 -771 5115 5017 6 1229 6708 88 14 1 chr4 84468179 84469795 -71160325 - L1_Mus1 LINE L1 0 6567 4931 6 1229 4663 77 5 6 chr4 84469796 84470467 -71159653 + L1_Mm LINE L1 4027 4696 -1187 6 1229 17886 152 18 5 chr4 84470490 84473931 -71156189 - L1_Mm LINE L1 -853 5030 1545 6 1229 4630 121 60 0 chr4 84473931 84474697 -71155423 - L1VL2 LINE L1 -5395 940 129 6 1229 225 0 0 0 chr4 84474819 84474844 -71155276 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1229 210 37 0 0 chr4 84474881 84474908 -71155212 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1229 312 292 19 9 chr4 84474908 84475015 -71155105 - MIR SINE MIR -51 211 104 6 1229 33 66 0 0 chr4 84475522 84475583 -71154537 + AT_rich Low_complexity Low_complexity 1 61 0 6 1229 3558 197 54 28 chr4 84475896 84476695 -71153425 - RLTR25A LTR ERVK 0 1103 284 6 1229 189 0 0 0 chr4 84476695 84476716 -71153404 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1229 1243 34 0 0 chr4 84476716 84476862 -71153258 - B1_Mm SINE Alu 0 147 2 6 1229 1228 186 23 38 chr4 84477206 84477604 -71152516 + RLTR24 LTR ERV1 1 455 -74 6 1229 269 343 103 0 chr4 84477721 84477861 -71152259 - MIR SINE MIR -51 157 2 6 1229 216 0 0 0 chr4 84478011 84478035 -71152085 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 6 1229 706 173 196 6 chr4 84478053 84478216 -71151904 + URR1A DNA MER1_type 1 194 -32 6 1229 196 330 122 26 chr4 84479796 84479911 -71150209 + L2 LINE L2 2119 2244 -1175 6 1229 218 190 169 17 chr4 84479984 84480043 -71150077 + L4 LINE RTE 1707 1774 -255 6 1229 229 333 0 0 chr4 84480471 84480537 -71149583 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 6 1229 486 98 0 0 chr4 84480726 84480808 -71149312 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 6 1229 318 284 172 5 chr4 84480867 84481065 -71149055 - L1M5 LINE L1 -438 5735 5505 6 1229 1186 160 47 0 chr4 84482296 84482509 -71147611 - URR1B DNA MER1_type 0 225 3 6 1229 338 0 0 23 chr4 84484358 84484401 -71145719 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1229 22 35 0 0 chr4 84484441 84484470 -71145650 + AT_rich Low_complexity Low_complexity 1 29 0 6 1229 3412 94 8 0 chr4 84484805 84485283 -71144837 - L1Md_F2 LINE L1 0 6582 6101 6 1229 204 304 139 20 chr4 84485361 84485512 -71144608 + MIRc SINE MIR 48 216 -52 6 1229 198 0 0 0 chr4 84486786 84486808 -71143312 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1229 261 200 47 128 chr4 84486886 84486972 -71143148 - MER112 DNA MER1_type -176 85 7 6 1229 21 0 0 0 chr4 84487018 84487039 -71143081 + AT_rich Low_complexity Low_complexity 1 21 0 6 1229 813 186 212 5 chr4 84487572 84487756 -71142364 - URR1A DNA MER1_type 0 226 5 6 1229 21 36 0 0 chr4 84488656 84488684 -71141436 + AT_rich Low_complexity Low_complexity 1 28 0 6 1229 271 259 104 7 chr4 84488883 84489027 -71141093 - L1ME4a LINE L1 -4 6120 5963 6 1229 338 277 68 8 chr4 84489040 84489277 -71140843 - L1ME4a LINE L1 -194 5930 5680 6 1229 33 73 0 0 chr4 84489539 84489607 -71140513 + AT_rich Low_complexity Low_complexity 1 68 0 6 1229 1843 181 42 76 chr4 84490293 84490699 -71139421 + ORR1B1 LTR MaLR 3 394 0 6 1229 219 295 56 104 chr4 84490742 84490867 -71139253 + MIR SINE MIR 33 151 -111 6 1229 182 360 116 32 chr4 84490931 84491086 -71139034 - MIRm SINE MIR -107 169 2 6 1229 372 43 0 0 chr4 84491351 84491397 -71138723 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 6 1229 204 254 32 0 chr4 84491399 84491462 -71138658 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 6 1229 1012 300 124 51 chr4 84491462 84491873 -71138247 - MLT2B1 LTR ERVL -79 441 1 6 1229 220 192 0 40 chr4 84492418 84492494 -71137626 + GA-rich Low_complexity Low_complexity 3 75 0 6 1229 590 276 150 32 chr4 84492520 84492834 -71137286 + Charlie22a DNA MER1_type 141 491 0 6 1229 627 250 64 6 chr4 84492836 84492993 -71137127 + Charlie22a DNA MER1_type 313 478 -13 6 1229 315 241 23 11 chr4 84493727 84493815 -71136305 - Kanga1d DNA Tc2 -69 540 452 6 1229 491 280 25 8 chr4 84494250 84494369 -71135751 + RSINE1 SINE B4 15 135 -30 6 1229 559 252 80 62 chr4 84494405 84494680 -71135440 - MER113 DNA MER1_type -122 399 120 6 1229 330 242 0 0 chr4 84494833 84494895 -71135225 - ID4_ SINE ID -19 64 3 6 1229 342 0 0 0 chr4 84494897 84494935 -71135185 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1229 539 302 64 29 chr4 84495100 84495381 -71134739 - MLT1E3 LTR MaLR 0 624 273 6 1229 618 14 0 0 chr4 84495452 84495523 -71134597 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1229 441 0 0 0 chr4 84496107 84496156 -71133964 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1229 447 311 0 0 chr4 84496924 84497043 -71133077 - ID_B1 SINE B4 0 224 106 6 1229 510 202 38 9 chr4 84497211 84497316 -71132804 - B3 SINE B2 -89 127 20 6 1229 349 304 79 34 chr4 84497713 84497890 -71132230 + MIR SINE MIR 21 205 -57 6 1229 1367 206 62 53 chr4 84497927 84498285 -71131835 - ORR1C2 LTR MaLR 0 384 1 6 1229 2378 66 25 9 chr4 84498602 84498924 -71131196 + ORR1A2 LTR MaLR 1 327 0 6 1229 1187 120 0 6 chr4 84499225 84499401 -71130719 + URR1A DNA MER1_type 52 226 0 6 1229 324 0 0 0 chr4 84500329 84500365 -71129755 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1229 261 0 0 0 chr4 84500365 84500393 -71129727 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1229 392 281 11 11 chr4 84500624 84500714 -71129406 + ID_B1 SINE B4 6 95 -129 3 1229 219 326 21 73 chr4 84500632 84500728 -71129392 + MamSINE1 SINE tRNA 14 104 -186 4 1229 236 363 44 0 chr4 84501087 84501178 -71128942 + MLT1J2 LTR MaLR 44 138 -310 5 1229 276 369 155 6 chr4 84501151 84501312 -71128808 - MLT1E2 LTR MaLR -134 493 309 6 1229 837 244 59 10 chr4 84501447 84501650 -71128470 + ID_B1 SINE B4 4 216 -8 7 1229 657 122 0 0 chr4 84501650 84501765 -71128355 + (CCAA)n Simple_repeat Simple_repeat 4 118 0 8 1229 233 269 0 69 chr4 84501786 84501858 -71128262 - MLT1E2 LTR MaLR -518 109 43 6 1229 1224 42 0 0 chr4 84502197 84502341 -71127779 - B1_Mus2 SINE Alu -3 144 1 9 1229 816 201 8 0 chr4 84503449 84503583 -71126537 + B1_Mur3 SINE Alu 14 148 -1 1 1229 1175 73 14 99 chr4 84503586 84503799 -71126321 + B2_Mm2 SINE B2 1 195 0 1 1229 330 91 0 0 chr4 84503802 84503857 -71126263 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1229 321 89 0 0 chr4 84503870 84503915 -71126205 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 1 1229 383 176 182 18 chr4 84504528 84504638 -71125482 - B3 SINE B2 0 216 89 1 1229 429 228 0 42 chr4 84504657 84504753 -71125367 + RLTR23 LTR ERV1 8 99 -331 1 1229 528 127 0 0 chr4 84504824 84504903 -71125217 - B3 SINE B2 -136 80 2 1 1229 465 115 0 0 chr4 84505168 84505255 -71124865 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1 1229 770 212 125 0 chr4 84505264 84505448 -71124672 - ID_B1 SINE B4 -17 207 1 1 1229 384 22 0 0 chr4 84505932 84505977 -71124143 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1229 368 333 114 74 chr4 84507320 84507914 -71122206 - L1ME3B LINE L1 0 6240 5623 1 1229 2076 160 45 6 chr4 84507932 84508290 -71121830 - MTC LTR MaLR 0 421 50 2 1229 970 68 0 0 chr4 84508290 84508423 -71121697 + Lx4A LINE L1 6121 6253 -805 2 1229 268 85 64 0 chr4 84508427 84508474 -71121646 + Lx4A LINE L1 6517 6566 -492 2 1229 431 135 0 0 chr4 84508468 84508542 -71121578 + Lx4B LINE L1 6619 6692 -366 2 1229 632 78 0 0 chr4 84508542 84508632 -71121488 + Lx4A LINE L1 6164 6253 -805 2 1229 259 189 0 0 chr4 84508634 84508687 -71121433 + Lx5 LINE L1 6494 6546 -504 2 1229 2371 140 59 28 chr4 84508677 84509022 -71121098 + Lx4A LINE L1 6620 6983 -75 2 1229 3711 16 121 0 chr4 84509022 84509462 -71120658 + MT2_Mm LTR ERVL 1 493 0 2 1229 2371 140 59 28 chr4 84509462 84509542 -71120578 + Lx4A LINE L1 6984 7058 0 2 1229 683 259 0 6 chr4 84509760 84509919 -71120201 - RSINE1 SINE B4 0 165 8 2 1229 995 290 70 59 chr4 84510038 84510565 -71119555 - L1MC2 LINE L1 -230 6114 5582 2 1229 639 270 56 14 chr4 84510570 84510784 -71119336 + ID_B1 SINE B4 2 224 0 2 1229 363 78 0 0 chr4 84510826 84510877 -71119243 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 2 1229 547 233 141 45 chr4 84510943 84511380 -71118740 - L1MC2 LINE L1 -826 5518 5029 2 1229 635 311 31 62 chr4 84511386 84511708 -71118412 + Lx8 LINE L1 6922 7233 -240 3 1229 185 122 0 47 chr4 84511775 84511818 -71118302 + GA-rich Low_complexity Low_complexity 1 41 0 3 1229 272 27 27 0 chr4 84511821 84511858 -71118262 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1229 744 94 0 0 chr4 84511858 84511963 -71118157 + (GA)n Simple_repeat Simple_repeat 2 107 0 3 1229 357 200 83 39 chr4 84511968 84512124 -71117996 - Lx3B LINE L1 -4 6969 6807 3 1229 743 91 0 0 chr4 84512128 84512227 -71117893 - Lx3_Mus LINE L1 -1273 5736 5638 3 1229 3173 80 9 0 chr4 84512224 84512677 -71117443 + L1_Mur1 LINE L1 4696 5152 -734 3 1229 1780 267 55 50 chr4 84512689 84513654 -71116466 - RMER17B LTR ERVK -9 899 2 3 1229 3562 82 52 2 chr4 84513663 84514186 -71115934 + L1_Mur1 LINE L1 5147 5695 -191 3 1229 603 134 341 0 chr4 84514259 84514447 -71115673 + Lx9 LINE L1 7392 7643 -1 3 1229 446 312 67 38 chr4 84514476 84514686 -71115434 - L1M4 LINE L1 -1250 4896 4681 4 1229 4262 117 46 13 chr4 84514698 84515388 -71114732 - RLTR19B LTR ERVK 0 715 3 4 1229 36 0 0 0 chr4 84515409 84515445 -71114675 + AT_rich Low_complexity Low_complexity 1 36 0 4 1229 1134 219 40 139 chr4 84515791 84515923 -71114197 - RMER6D LTR ERVK -56 634 400 4 1229 2244 175 5 13 chr4 84515923 84516300 -71113820 - MTB_Mm LTR MaLR -33 374 1 4 1229 1134 219 40 139 chr4 84516300 84516521 -71113599 - RMER6D LTR ERVK -56 399 1 4 1229 881 258 104 17 chr4 84516604 84517115 -71113005 - L1MA9 LINE L1 -24 7248 6688 4 1229 1137 246 149 19 chr4 84517115 84517484 -71112636 + MTD LTR MaLR 1 417 -2 4 1229 625 245 34 60 chr4 84517484 84517608 -71112512 - L1MA9 LINE L1 -578 6694 6574 4 1229 3147 155 59 39 chr4 84517608 84518284 -71111836 - RMER6C LTR ERVK 0 690 1 4 1229 625 245 34 60 chr4 84518284 84518424 -71111696 - L1MA9 LINE L1 -699 6573 6438 4 1229 354 246 131 6 chr4 84518868 84518908 -71111212 - L1MA9 LINE L1 -2464 4636 4597 4 1229 222 37 0 0 chr4 84518908 84518935 -71111185 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1229 354 246 131 6 chr4 84518935 84519062 -71111058 - L1MA9 LINE L1 -2504 4596 4448 4 1229 429 266 78 72 chr4 84519234 84519566 -71110554 - L1MA9 LINE L1 -4516 2511 2178 4 1229 222 37 0 0 chr4 84519582 84519609 -71110511 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4 1229 505 263 126 93 chr4 84519699 84520055 -71110065 - L1MA9 LINE L1 -5009 2021 1654 4 1229 198 368 97 29 chr4 84523201 84523411 -71106709 - L2c LINE L2 -128 3247 3024 5 1229 671 293 94 36 chr4 84523952 84524228 -71105892 + B4 SINE B4 1 292 0 5 1229 355 290 143 30 chr4 84524263 84524494 -71105626 + ORSL-2a DNA Tip100 77 333 -9 5 1229 538 261 35 15 chr4 84524972 84525179 -71104941 + L1MB4 LINE L1 5650 5842 -338 5 1229 306 0 0 0 chr4 84525597 84525631 -71104489 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1229 416 157 110 25 chr4 84526569 84526687 -71103433 + Lx4B LINE L1 6923 7050 -8 5 1229 262 289 26 0 chr4 84526792 84526868 -71103252 + B1_Mus1 SINE Alu 1 78 -70 5 1229 470 319 87 20 chr4 84526949 84527032 -71103088 + L1MB7 LINE L1 5327 5417 -763 5 1229 261 0 0 0 chr4 84527032 84527061 -71103059 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 5 1229 508 319 87 20 chr4 84527061 84527437 -71102683 + L1MB7 LINE L1 5418 5817 -357 5 1229 426 273 8 60 chr4 84527498 84527588 -71102532 + B3 SINE B2 78 165 -51 5 1229 261 0 0 0 chr4 84527588 84527617 -71102503 + (CATA)n Simple_repeat Simple_repeat 2 30 0 6 1229 426 273 8 60 chr4 84527617 84527643 -71102477 + B3 SINE B2 166 188 -28 5 1229 647 250 110 4 chr4 84527652 84527897 -71102223 + L1MB7 LINE L1 5813 6083 -101 5 1229 984 54 33 17 chr4 84528044 84528351 -71101769 + (TCTA)n Simple_repeat Simple_repeat 1 312 0 6 1229 785 246 69 58 chr4 84528882 84529158 -71100962 - B4A SINE B4 -12 280 2 6 1229 189 0 0 0 chr4 84529345 84529366 -71100754 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1229 215 31 0 30 chr4 84531349 84531382 -71098738 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 6 1229 21 36 0 0 chr4 84532561 84532589 -71097531 + AT_rich Low_complexity Low_complexity 1 28 0 6 1229 285 146 0 0 chr4 84533010 84533058 -71097062 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1229 1000 256 62 38 chr4 84533349 84533637 -71096483 + MTD LTR MaLR 125 419 0 6 1229 254 248 223 33 chr4 84533637 84533758 -71096362 + RSINE1 SINE B4 5 148 -17 6 1229 354 23 0 0 chr4 84533772 84533815 -71096305 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 1229 613 264 13 0 chr4 84533821 84533976 -71096144 - Lx8 LINE L1 -142 7331 7175 7 1229 470 245 0 0 chr4 84534303 84534405 -71095715 - B3 SINE B2 -114 102 1 7 1229 198 0 0 0 chr4 84535346 84535368 -71094752 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1229 249 264 90 48 chr4 84535858 84536025 -71094095 + Charlie7a DNA MER1_type 92 265 -7 7 1229 908 310 136 9 chr4 84536083 84536432 -71093688 - MT2A LTR ERVL -3 530 18 7 1229 266 322 23 92 chr4 84536432 84536538 -71093582 - MTE2a LTR MaLR -257 122 23 7 1229 1268 251 141 17 chr4 84536538 84537012 -71093108 + MT2A LTR ERVL 1 533 0 7 1229 2078 124 132 3 chr4 84537014 84537363 -71092757 + ORR1B1 LTR MaLR 1 394 0 7 1229 266 322 23 92 chr4 84537363 84537383 -71092737 - MTE2a LTR MaLR -357 22 2 7 1229 2200 89 0 3 chr4 84537411 84537705 -71092415 - L1_Mus1 LINE L1 0 6567 6275 7 1229 285 211 0 0 chr4 84540016 84540068 -71090052 + RMER5 LTR ERV1 235 286 -248 7 1229 510 316 40 49 chr4 84540299 84540522 -71089598 + RLTR26 LTR ERVK 197 417 -225 8 1229 468 228 77 23 chr4 84540736 84540866 -71089254 - B3 SINE B2 -79 137 1 8 1229 245 261 72 0 chr4 84541017 84541086 -71089034 + ID4_ SINE ID 3 76 -7 8 1229 501 84 0 0 chr4 84541102 84541173 -71088947 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 1230 1237 255 99 38 chr4 84542313 84542705 -71087415 + MTD LTR MaLR 1 416 -3 8 1230 21 0 0 0 chr4 84542716 84542737 -71087383 + AT_rich Low_complexity Low_complexity 1 21 0 8 1230 439 315 7 33 chr4 84543146 84543297 -71086823 + MTEb LTR MaLR 2 148 -231 8 1230 427 294 30 20 chr4 84543326 84543524 -71086596 - L1M4 LINE L1 -1304 4836 4637 8 1230 37016 39 1 3 chr4 84543534 84549430 -71080690 - L1Md_F2 LINE L1 -7 6578 603 8 1230 2142 72 3 3 chr4 84549429 84549736 -71080384 - L1_Mm LINE L1 -516 5367 5061 8 1230 265 288 71 28 chr4 84549752 84549963 -71080157 - L1M4 LINE L1 -1527 4613 4394 8 1230 1109 98 17 0 chr4 84549972 84550145 -71079975 - Lx LINE L1 -3 6651 6476 9 1230 310 265 115 19 chr4 84550527 84550631 -71079489 - MTEa LTR MaLR -265 114 1 9 1230 627 268 121 51 chr4 84550715 84551014 -71079106 - L1M4 LINE L1 -1840 4300 3983 8 1230 890 228 18 5 chr4 84551014 84551234 -71078886 - URR1B DNA MER1_type 0 225 3 9 1230 627 271 150 32 chr4 84551234 84551839 -71078281 - L1M4 LINE L1 -2157 3989 3278 8 1230 494 244 115 24 chr4 84551974 84552226 -71077894 - L1M4 LINE L1 -3231 2909 2635 8 1230 230 250 34 151 chr4 84552504 84552601 -71077519 + MER70B LTR ERVL 378 457 -121 9 1230 1494 210 22 51 chr4 84552601 84552957 -71077163 + ORR1B2 LTR MaLR 1 346 -21 9 1230 656 212 113 38 chr4 84553337 84553523 -71076597 - B3 SINE B2 -16 200 1 9 1230 556 281 125 0 chr4 84553594 84553754 -71076366 - B3A SINE B2 -17 181 2 9 1230 22 0 0 0 chr4 84553801 84553823 -71076297 + AT_rich Low_complexity Low_complexity 1 22 0 9 1230 2837 86 65 14 chr4 84553945 84554360 -71075760 + L1_Mus3 LINE L1 6203 6638 0 9 1230 1959 275 160 13 chr4 84554449 84555047 -71075073 - Lx6 LINE L1 -4 7456 6739 9 1230 549 30 0 0 chr4 84555047 84555114 -71075006 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1230 1959 292 112 67 chr4 84555114 84555714 -71074406 - Lx6 LINE L1 -722 6738 5885 9 1230 2232 100 0 23 chr4 84555716 84556063 -71074057 - L1_Mus4 LINE L1 -75 6561 6223 1 1230 10278 177 35 20 chr4 84556073 84558128 -71071992 - L1_Mur2 LINE L1 -51 5826 3740 1 1230 24 32 0 0 chr4 84559005 84559036 -71071084 + AT_rich Low_complexity Low_complexity 1 31 0 1 1230 390 115 0 0 chr4 84559185 84559246 -71070874 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1230 2444 251 41 28 chr4 84559269 84559975 -71070145 - Lx9 LINE L1 -212 7432 6718 1 1230 773 173 191 28 chr4 84559978 84560156 -71069964 - RMER6B LTR ERVK -3 458 252 1 1230 285 319 71 30 chr4 84560198 84560366 -71069754 - MMERGLN-int LTR ERV1 -5360 2196 2022 1 1230 292 312 55 91 chr4 84560566 84560820 -71069300 - MMERGLN-int LTR ERV1 -5791 1765 1521 1 1230 421 294 97 27 chr4 84560814 84560999 -71069121 - RLTR19-int LTR ERVK -5916 221 24 1 1230 1652 226 88 23 chr4 84561019 84561494 -71068626 - RLTR19C LTR ERVK 0 506 1 1 1230 1097 182 39 10 chr4 84561534 84561739 -71068381 + MTC LTR MaLR 1 211 -210 1 1230 21 36 0 0 chr4 84562834 84562862 -71067258 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 487 85 24 0 chr4 84562898 84562980 -71067140 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1230 25 0 0 0 chr4 84563009 84563034 -71067086 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 215 247 116 63 chr4 84563456 84563551 -71066569 - PB1D10 SINE Alu -1 116 17 1 1230 285 29 0 0 chr4 84563659 84563693 -71066427 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1230 1180 48 7 0 chr4 84563701 84563847 -71066273 + B1_Mus1 SINE Alu 2 148 0 1 1230 1334 173 0 17 chr4 84563881 84564111 -71066009 + MTC LTR MaLR 196 421 0 1 1230 234 245 58 127 chr4 84564124 84564297 -71065823 - Lx9 LINE L1 -1398 6246 6086 1 1230 645 304 24 10 chr4 84564335 84564378 -71065742 - B3 SINE B2 -7 209 167 1 1230 335 100 0 32 chr4 84564378 84564440 -71065680 + (TATG)n Simple_repeat Simple_repeat 2 61 0 1 1230 645 304 24 10 chr4 84564440 84564602 -71065518 - B3 SINE B2 -50 166 2 1 1230 538 292 75 20 chr4 84564608 84564755 -71065365 - B3A SINE B2 -4 194 40 1 1230 613 99 0 18 chr4 84564788 84564901 -71065219 - L1_Mus4 LINE L1 -6 6630 6520 1 1230 2141 113 0 3 chr4 84564944 84565255 -71064865 + L1_Mm LINE L1 5217 5526 -357 1 1230 377 293 89 78 chr4 84565309 84565579 -71064541 + B4A SINE B4 1 273 -19 1 1230 194 91 30 0 chr4 84565658 84565691 -71064429 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1230 1968 148 101 29 chr4 84565824 84566199 -71063921 + MTC LTR MaLR 1 402 -19 1 1230 1012 295 59 28 chr4 84566258 84566680 -71063440 - Lx9 LINE L1 -127 7517 7083 1 1230 230 248 54 31 chr4 84566804 84566933 -71063187 + Lx9 LINE L1 6121 6252 -1392 1 1230 808 271 119 13 chr4 84567123 84567586 -71062534 - L1MDa LINE L1 -2118 4419 3908 1 1230 329 305 112 0 chr4 84567786 84567973 -71062147 - L1MDa LINE L1 -4557 2076 1869 1 1230 317 233 152 12 chr4 84568149 84568314 -71061806 - L1_Rod LINE L1 -1097 4750 4563 1 1230 315 409 91 40 chr4 84568320 84568595 -71061525 - L1MDa LINE L1 -5971 662 374 1 1230 295 158 362 18 chr4 84568622 84568726 -71061394 - B2_Mm2 SINE B2 -26 169 21 1 1230 1191 108 17 0 chr4 84568777 84568953 -71061167 - B2_Mm1t SINE B2 -14 179 1 1 1230 446 302 121 26 chr4 84568954 84569226 -71060894 - L1MDa LINE L1 -6258 375 78 1 1230 1176 155 54 36 chr4 84570934 84571155 -71058965 + URR1B DNA MER1_type 1 225 0 1 1230 619 231 77 67 chr4 84572526 84572721 -71057399 + B3A SINE B2 2 198 0 1 1230 620 276 189 16 chr4 84572765 84573130 -71056990 - Lx9 LINE L1 -1 7643 7216 1 1230 269 208 167 0 chr4 84573124 84573196 -71056924 + Lx9 LINE L1 7104 7187 -457 1 1230 3450 315 77 60 chr4 84573239 84574121 -71055999 - Lx8 LINE L1 -9 7464 6535 1 1230 207 0 0 0 chr4 84574121 84574144 -71055976 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1230 3450 315 77 60 chr4 84574144 84574391 -71055729 - Lx8 LINE L1 -939 6534 6268 1 1230 1167 115 67 43 chr4 84574391 84574600 -71055520 - L1Md_F2 LINE L1 0 6582 6369 1 1230 3450 293 70 36 chr4 84574600 84575949 -71054171 - Lx8 LINE L1 -1206 6267 4935 1 1230 526 272 30 50 chr4 84575941 84576142 -71053978 + L1_Mur3 LINE L1 4544 4740 -1140 1 1230 24 0 0 0 chr4 84576366 84576390 -71053730 + AT_rich Low_complexity Low_complexity 1 24 0 1 1230 25 0 0 0 chr4 84576586 84576611 -71053509 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 24 32 0 0 chr4 84576639 84576670 -71053450 + AT_rich Low_complexity Low_complexity 1 31 0 1 1230 1121 226 5 0 chr4 84577095 84577303 -71052817 - B3 SINE B2 -6 210 2 1 1230 3130 220 154 48 chr4 84577499 84578425 -71051695 - RMER1C Other Other -1 1341 317 1 1230 12628 63 0 0 chr4 84578435 84580059 -71050061 + L1_Mm LINE L1 3737 5360 -523 1 1230 1802 244 65 25 chr4 84580056 84580624 -71049496 - Lx9 LINE L1 -180 7464 6874 1 1230 269 254 103 60 chr4 84580628 84580642 -71049478 - B3A SINE B2 -75 123 2 1 1230 383 221 26 19 chr4 84580642 84580745 -71049375 - B4A SINE B4 -62 103 2 1 1230 2218 199 68 23 chr4 84581305 84581820 -71048300 - Lx9 LINE L1 0 7644 7107 1 1230 455 281 92 12 chr4 84581947 84582120 -71048000 - MER119 DNA MER1_type -127 456 270 1 1230 955 56 8 0 chr4 84582211 84582337 -71047783 - B1_Mus2 SINE Alu -11 136 10 1 1230 250 278 39 13 chr4 84582240 84582393 -71047727 - ORR1B1-int LTR MaLR -755 754 598 1 1230 268 372 90 0 chr4 84582426 84582571 -71047549 - MER119 DNA MER1_type -399 184 27 1 1230 356 324 162 24 chr4 84582721 84582974 -71047146 + B4A SINE B4 1 288 -4 1 1230 1138 271 82 43 chr4 84583559 84583945 -71046175 - MTD LTR MaLR -21 398 1 1 1230 373 356 87 25 chr4 84583956 84584152 -71045968 - MIR SINE MIR -2 260 53 1 1230 8535 112 20 14 chr4 84584183 84585481 -71044639 - Lx2A LINE L1 0 7008 5703 1 1230 357 293 24 24 chr4 84586551 84586635 -71043485 + RSINE1 SINE B4 69 152 -13 1 1230 199 388 50 0 chr4 84587357 84587437 -71042683 - L3b LINE CR1 -231 251 168 1 1230 25 51 0 0 chr4 84589167 84589206 -71040914 + AT_rich Low_complexity Low_complexity 1 39 0 1 1230 516 100 0 0 chr4 84591088 84591168 -71038952 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1 1230 337 327 121 62 chr4 84591266 84591556 -71038564 + L2 LINE L2 1952 2258 -1161 1 1230 1988 225 120 48 chr4 84591787 84592553 -71037567 + L1_Rod LINE L1 1908 2728 -3119 1 1230 25 0 0 0 chr4 84593237 84593262 -71036858 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 251 219 125 0 chr4 84593306 84593370 -71036750 + ID4 SINE ID 3 74 -9 1 1230 1305 311 61 56 chr4 84594079 84594651 -71035469 - MTEa-int LTR MaLR -30 1550 976 1 1230 890 102 0 8 chr4 84594663 84594792 -71035328 - ORR1A2 LTR MaLR -8 319 192 1 1230 261 102 0 0 chr4 84594792 84594841 -71035279 + L1_Mus4 LINE L1 6587 6635 -1 1 1230 1051 182 116 0 chr4 84594841 84595083 -71035037 - ORR1B1 LTR MaLR -124 270 1 1 1230 703 357 110 68 chr4 84595084 84595849 -71034271 - MTEa-int LTR MaLR -611 969 173 1 1230 1709 217 84 25 chr4 84595849 84596255 -71033865 - RMER15 LTR ERVL 0 575 146 1 1230 289 277 128 10 chr4 84596396 84596498 -71033622 - MTEa-int LTR MaLR -1466 114 1 1 1230 711 305 96 58 chr4 84596506 84596851 -71033269 - MTEa LTR MaLR -14 365 8 1 1230 30 59 0 0 chr4 84596979 84597030 -71033090 + AT_rich Low_complexity Low_complexity 1 51 0 1 1230 448 303 63 22 chr4 84597207 84597477 -71032643 - L1MCa LINE L1 -6227 281 1 1 1230 290 274 53 0 chr4 84600153 84600266 -71029854 + L1ME3B LINE L1 5826 5944 -296 1 1230 23 0 0 0 chr4 84600475 84600498 -71029622 + AT_rich Low_complexity Low_complexity 1 23 0 1 1230 210 273 0 0 chr4 84600606 84600672 -71029448 + (CAGCC)n Simple_repeat Simple_repeat 4 69 0 1 1230 485 336 0 0 chr4 84600889 84601038 -71029082 + B1F1 SINE Alu 1 149 0 1 1230 1061 58 51 0 chr4 84601124 84601262 -71028858 - B1_Mus2 SINE Alu 0 147 3 1 1230 25 0 0 0 chr4 84604802 84604827 -71025293 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 429 176 34 140 chr4 84604839 84604926 -71025194 - L1M4c LINE L1 -687 6092 6030 1 1230 381 221 65 0 chr4 84604926 84605003 -71025117 - ID4 SINE ID 0 83 2 1 1230 429 176 34 140 chr4 84605003 84605093 -71025027 - L1M4c LINE L1 -750 6029 5934 1 1230 582 15 0 0 chr4 84605497 84605564 -71024556 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1230 491 234 162 30 chr4 84605777 84606011 -71024109 - L1M4c LINE L1 -1270 5477 5213 1 1230 28 0 0 0 chr4 84606227 84606255 -71023865 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 368 284 60 33 chr4 84606406 84606621 -71023499 - L1M4c LINE L1 -4075 2674 2454 1 1230 1114 274 104 37 chr4 84606667 84607232 -71022888 - L1_Mur3 LINE L1 -1816 4064 3462 1 1230 602 316 106 22 chr4 84607314 84607984 -71022136 - L1_Mur3 LINE L1 -3934 1913 1203 1 1230 1041 46 0 0 chr4 84608012 84608143 -71021977 + (TTTCC)n Simple_repeat Simple_repeat 5 135 0 1 1230 234 0 0 0 chr4 84608462 84608488 -71021632 + (CAGTT)n Simple_repeat Simple_repeat 3 28 0 1 1230 351 0 0 0 chr4 84608496 84608535 -71021585 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1230 340 358 74 42 chr4 84608632 84608944 -71021176 - L1M4c LINE L1 -5362 1283 962 1 1230 287 299 71 45 chr4 84608948 84609060 -71021060 + PB1D7 SINE Alu 5 119 -1 1 1230 292 307 160 48 chr4 84609098 84609597 -71020523 - L1M4c LINE L1 -5752 855 301 1 1230 266 307 101 52 chr4 84609777 84610140 -71019980 - L1M4b LINE L1 -4686 2416 1916 1 1230 333 243 61 35 chr4 84610179 84610294 -71019826 - L1M4b LINE L1 -5585 1749 1632 1 1230 1059 255 162 18 chr4 84610466 84610842 -71019278 - Lx5 LINE L1 -575 6885 6470 1 1230 243 105 35 17 chr4 84610906 84610964 -71019156 + G-rich Low_complexity Low_complexity 1 59 0 1 1230 305 365 60 4 chr4 84611310 84611560 -71018560 - L1M4b LINE L1 -6105 1229 966 1 1230 432 284 43 8 chr4 84611585 84611702 -71018418 + B1F1 SINE Alu 14 134 -15 1 1230 813 275 80 0 chr4 84612104 84612406 -71017714 - L1MB2 LINE L1 -194 5977 5652 1 1230 285 265 68 10 chr4 84612413 84612516 -71017604 - B1_Mur4 SINE Alu -31 119 11 1 1230 342 261 121 38 chr4 84612527 84612729 -71017391 - L1MB2 LINE L1 -563 5605 5376 1 1230 351 0 0 0 chr4 84612947 84612986 -71017134 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1230 2138 264 58 52 chr4 84612988 84613236 -71016884 - RMER1C Other Other -148 1194 966 1 1230 1089 53 0 8 chr4 84613236 84613370 -71016750 + B1_Mm SINE Alu 2 134 -13 1 1230 294 50 0 0 chr4 84613370 84613410 -71016710 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1230 2138 264 58 52 chr4 84613410 84613896 -71016224 - RMER1C Other Other -377 965 455 1 1230 5525 76 7 40 chr4 84614148 84615451 -71014669 - L1_Mur1 LINE L1 0 3914 2717 1 1230 226 289 109 40 chr4 84615746 84615847 -71014273 - L2a LINE L2 -96 3330 3223 1 1230 1264 313 73 6 chr4 84615921 84616413 -71013707 - Lx8 LINE L1 -172 7301 6777 1 1230 229 277 0 58 chr4 84616436 84616505 -71013615 - ID4 SINE ID -18 65 1 1 1230 455 107 0 13 chr4 84617920 84617947 -71012173 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1230 997 141 0 11 chr4 84617947 84618127 -71011993 + GA-rich Low_complexity Low_complexity 3 180 0 1 1230 455 107 0 13 chr4 84618127 84618175 -71011945 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1230 23 33 0 0 chr4 84618323 84618353 -71011767 + AT_rich Low_complexity Low_complexity 1 30 0 2 1230 28 61 0 0 chr4 84618944 84618993 -71011127 + AT_rich Low_complexity Low_complexity 1 49 0 2 1230 2097 270 73 29 chr4 84621130 84623220 -71006900 - Lx7 LINE L1 -16 7680 5257 2 1230 200 34 0 33 chr4 84623822 84623852 -71006268 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1230 2185 230 131 37 chr4 84624191 84625033 -71005087 - Lx6 LINE L1 0 7460 6299 2 1230 604 344 76 4 chr4 84625585 84625836 -71004284 - B4A SINE B4 0 292 24 2 1230 475 258 13 50 chr4 84625844 84626003 -71004117 + MTE2a LTR MaLR 7 159 -220 2 1230 378 134 0 0 chr4 84626007 84626074 -71004046 + (TCC)n Simple_repeat Simple_repeat 3 69 0 2 1230 9179 103 16 2 chr4 84626076 84627704 -71002416 - Lx3B LINE L1 -4 6969 5316 2 1230 692 240 143 20 chr4 84627712 84627908 -71002212 + MTE2a LTR MaLR 160 379 0 2 1230 580 286 68 19 chr4 84627982 84628226 -71001894 + MER2 DNA MER2_type 76 342 -3 2 1230 25 0 0 0 chr4 84628932 84628957 -71001163 + AT_rich Low_complexity Low_complexity 1 25 0 2 1230 771 304 92 14 chr4 84628970 84629254 -71000866 - Lx8 LINE L1 -207 7266 6961 2 1230 277 30 0 0 chr4 84629693 84629726 -71000394 + L1Md_F3 LINE L1 6161 6193 -391 2 1230 2286 36 0 4 chr4 84629727 84630008 -71000112 - MTA_Mm LTR MaLR -116 280 1 2 1230 308 263 92 34 chr4 84630052 84630288 -70999832 - L1_Mur3 LINE L1 -4141 1745 1497 2 1230 180 125 0 0 chr4 84631397 84631429 -70998691 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 2 1230 306 125 0 0 chr4 84632773 84632821 -70997299 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1230 211 238 16 0 chr4 84632843 84632906 -70997214 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1230 504 0 0 0 chr4 84632911 84632967 -70997153 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2 1230 5865 100 72 5 chr4 84634796 84635741 -70994379 + L1_Mur1 LINE L1 4588 5595 -291 2 1230 297 0 0 0 chr4 84635813 84635846 -70994274 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1230 29 84 0 0 chr4 84635984 84636055 -70994065 + AT_rich Low_complexity Low_complexity 1 71 0 2 1230 878 154 42 0 chr4 84636782 84636925 -70993195 + B1_Mur4 SINE Alu 1 149 -1 2 1230 24 0 0 0 chr4 84637289 84637313 -70992807 + AT_rich Low_complexity Low_complexity 1 24 0 2 1230 686 224 8 0 chr4 84638620 84638745 -70991375 + B1_Mus2 SINE Alu 1 126 -21 2 1230 182 98 0 47 chr4 84638754 84638797 -70991323 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 2 1230 306 0 0 0 chr4 84638798 84638832 -70991288 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1230 479 277 40 111 chr4 84639530 84639729 -70990391 + B3A SINE B2 2 186 -9 2 1230 26 30 0 0 chr4 84640873 84640906 -70989214 + AT_rich Low_complexity Low_complexity 1 33 0 2 1230 618 39 0 0 chr4 84640990 84641067 -70989053 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 2 1230 646 219 70 32 chr4 84642901 84643057 -70987063 - MTEa LTR MaLR -215 164 3 2 1230 347 265 19 12 chr4 84643092 84643203 -70986917 + ID4 SINE ID 12 124 -28 2 1230 265 294 0 0 chr4 84643386 84643454 -70986666 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1230 486 353 112 31 chr4 84643500 84643760 -70986360 - MLT2B1 LTR ERVL -78 442 162 2 1230 682 258 72 138 chr4 84644245 84644622 -70985498 - MLT1B LTR MaLR -4 386 35 2 1230 951 304 62 32 chr4 84644756 84645127 -70984993 - RMER5 LTR ERV1 -48 486 105 2 1230 874 288 103 16 chr4 84645223 84645534 -70984586 - MTD LTR MaLR -81 338 1 2 1230 254 236 76 30 chr4 84645631 84645762 -70984358 + Lx8 LINE L1 7314 7450 -23 2 1230 5784 117 11 21 chr4 84646105 84647013 -70983107 + Lx3C LINE L1 6078 6976 0 2 1230 186 103 0 0 chr4 84647048 84647077 -70983043 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1230 382 114 14 14 chr4 84648436 84648507 -70981613 + (TCC)n Simple_repeat Simple_repeat 1 71 0 2 1230 207 175 0 0 chr4 84648517 84648574 -70981546 + CT-rich Low_complexity Low_complexity 2 58 0 2 1230 471 56 27 14 chr4 84648679 84648752 -70981368 + L1_Mus1 LINE L1 6492 6565 -2 2 1230 605 277 58 16 chr4 84648782 84648973 -70981147 - MER82 DNA MER2_type -331 322 124 2 1230 24 32 0 0 chr4 84649011 84649042 -70981078 + AT_rich Low_complexity Low_complexity 1 31 0 2 1230 718 94 17 0 chr4 84649838 84649955 -70980165 + (TCCC)n Simple_repeat Simple_repeat 2 120 0 2 1230 231 114 0 0 chr4 84649962 84650006 -70980114 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1230 302 312 26 0 chr4 84650006 84650083 -70980037 - B3 SINE B2 -67 149 71 2 1230 21 0 0 0 chr4 84650494 84650515 -70979605 + AT_rich Low_complexity Low_complexity 1 21 0 2 1230 589 304 100 35 chr4 84651388 84651647 -70978473 + LFSINE_Vert SINE SINE 74 349 -110 2 1230 276 284 0 89 chr4 84652567 84652679 -70977441 - RMER12 LTR ERVK -472 850 749 2 1230 228 182 45 15 chr4 84653674 84653741 -70976379 - L1MB8 LINE L1 -1 6177 6109 2 1230 2123 162 68 48 chr4 84653878 84654332 -70975788 + RMER1C Other Other 879 1341 -1 2 1230 1163 68 0 7 chr4 84654536 84654683 -70975437 + B1_Mus2 SINE Alu 1 146 -1 2 1230 394 222 121 45 chr4 84654803 84654935 -70975185 + B1F SINE Alu 7 148 -1 2 1230 783 202 139 8 chr4 84655026 84655270 -70974850 + RCHARR1 DNA MER1_type 420 695 -279 2 1230 531 186 10 0 chr4 84655530 84655632 -70974488 + MTC LTR MaLR 1 103 -318 2 1230 734 117 8 0 chr4 84655632 84655752 -70974368 + (TCC)n Simple_repeat Simple_repeat 3 123 0 2 1230 22 56 0 0 chr4 84656069 84656105 -70974015 + AT_rich Low_complexity Low_complexity 1 36 0 2 1230 1907 131 49 21 chr4 84656105 84656434 -70973686 + MTC LTR MaLR 83 420 -1 2 1230 232 332 125 7 chr4 84656545 84656824 -70973296 - L1MDa LINE L1 -917 5620 5309 2 1230 309 202 48 75 chr4 84657262 84657372 -70972748 + PB1D7 SINE Alu 15 120 0 2 1230 897 277 86 21 chr4 84657581 84658049 -70972071 - L1MDa LINE L1 -4721 1912 1415 2 1230 929 106 119 0 chr4 84658128 84658288 -70971832 - L1Md_F2 LINE L1 -4 6578 6400 2 1230 264 268 62 16 chr4 84658291 84658420 -70971700 - L1_Rod LINE L1 -2247 3600 3466 2 1230 295 176 0 0 chr4 84658451 84658502 -70971618 - MTD LTR MaLR 0 419 369 2 1230 241 275 43 0 chr4 84658554 84658567 -70971553 - MTC LTR MaLR -282 114 102 2 1230 623 48 12 0 chr4 84658567 84658650 -70971470 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 2 1230 305 118 4 18 chr4 84658650 84658705 -70971415 - MTC LTR MaLR -295 101 44 2 1230 879 281 144 43 chr4 84658698 84659141 -70970979 - RMER19B LTR ERVK -414 488 1 2 1230 3598 191 55 45 chr4 84659143 84660054 -70970066 - L1_Rod LINE L1 -2956 2891 1972 2 1230 367 136 15 0 chr4 84660052 84660118 -70970002 - L1_Rod LINE L1 -4228 1619 1553 2 1230 530 249 52 33 chr4 84660314 84660703 -70969417 - L1_Rod LINE L1 -4293 1554 1112 2 1230 6923 162 23 10 chr4 84660741 84662049 -70968071 - Lx2B LINE L1 -157 6843 5509 2 1230 5494 142 70 12 chr4 84662043 84662467 -70967653 + L1_Mur2 LINE L1 4249 4722 -1155 2 1230 522 0 0 0 chr4 84662467 84662525 -70967595 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1230 5494 142 70 12 chr4 84662525 84663108 -70967012 + L1_Mur2 LINE L1 4723 5315 -562 2 1230 9966 59 8 2 chr4 84663144 84665080 -70965040 - L1Md_F2 LINE L1 -4 6578 4632 2 1230 833 116 0 0 chr4 84665084 84665205 -70964915 + L1_Mur2 LINE L1 5326 5446 -440 2 1230 2107 226 94 22 chr4 84665205 84665382 -70964738 - L1_Rod LINE L1 -6463 1145 950 2 1230 399 21 0 0 chr4 84665382 84665430 -70964690 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1230 3034 156 31 29 chr4 84665430 84665984 -70964136 - Lx2 LINE L1 -6 6991 6437 2 1230 2107 226 94 22 chr4 84665984 84666452 -70963668 - L1_Rod LINE L1 -6659 949 454 2 1230 390 339 0 17 chr4 84667023 84667143 -70962977 + PB1 SINE Alu 3 120 -7 2 1230 232 244 40 138 chr4 84667786 84667938 -70962182 - YREP_Mm Unknown Unknown -1496 316 180 2 1230 1090 44 0 0 chr4 84667806 84667942 -70962178 + B1_Mus1 SINE Alu 13 148 0 2 1230 24 0 0 0 chr4 84667942 84667966 -70962154 + AT_rich Low_complexity Low_complexity 1 24 0 2 1230 405 0 0 0 chr4 84668221 84668266 -70961854 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1230 6010 168 98 17 chr4 84668267 84669705 -70960415 - Lx5 LINE L1 -16 7034 5472 2 1230 3278 151 390 7 chr4 84669707 84670724 -70959396 - Lx5 LINE L1 -2063 3814 2408 2 1230 31 26 0 0 chr4 84671043 84671081 -70959039 + AT_rich Low_complexity Low_complexity 1 38 0 2 1230 285 350 64 46 chr4 84671264 84671656 -70958464 + L1M5 LINE L1 4961 5359 -787 2 1230 315 0 0 0 chr4 84671915 84671950 -70958170 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1230 2171 41 48 0 chr4 84671952 84672242 -70957878 - L1Md_F2 LINE L1 -69 6513 6210 2 153 603 290 92 15 chr4 84672315 84672596 -70957524 - MER31A LTR ERV1 -4 462 169 2 1231 252 143 0 0 chr4 84673305 84673347 -70956773 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1231 1366 105 9 0 chr4 84673349 84673568 -70956552 + Lx2 LINE L1 6776 6996 -1 2 1231 572 219 52 7 chr4 84673669 84673829 -70956291 + B3A SINE B2 51 216 0 2 1231 405 0 0 0 chr4 84673940 84673985 -70956135 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1231 28 48 0 0 chr4 84673995 84674037 -70956083 + AT_rich Low_complexity Low_complexity 1 42 0 2 1231 234 0 0 0 chr4 84674425 84674451 -70955669 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1231 208 210 24 36 chr4 84674804 84674888 -70955232 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2 1231 1466 246 76 3 chr4 84675089 84675472 -70954648 - MTD LTR MaLR -8 411 1 2 1231 430 279 10 0 chr4 84675472 84675576 -70954544 - MTD-int LTR MaLR 0 1258 1154 2 1231 244 247 12 105 chr4 84676184 84676270 -70953850 - B4 SINE B4 0 292 215 2 1231 208 224 0 0 chr4 84676270 84676319 -70953801 + CT-rich Low_complexity Low_complexity 2 50 0 2 1231 405 0 0 0 chr4 84676320 84676365 -70953755 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2 1231 544 189 362 17 chr4 84676377 84676615 -70953505 - ORR1D1 LTR MaLR -53 321 1 2 1231 301 299 137 3 chr4 84676646 84676865 -70953255 - L1M2 LINE L1 -4007 2575 2368 2 1231 714 239 3 79 chr4 84676902 84677193 -70952927 + RMER17C LTR ERVK 1 269 -141 2 1231 4305 140 49 30 chr4 84677197 84677991 -70952129 + RMER17D2 LTR ERVK 1 809 0 2 1231 312 27 0 0 chr4 84678583 84678620 -70951500 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1231 622 316 11 17 chr4 84678665 84678842 -70951278 - B4A SINE B4 -116 176 1 2 1231 213 390 85 0 chr4 84679156 84679238 -70950882 + PB1D10 SINE Alu 1 89 -28 3 1231 46 62 0 0 chr4 84679239 84679320 -70950800 + AT_rich Low_complexity Low_complexity 1 81 0 3 1231 180 184 0 0 chr4 84679341 84679390 -70950730 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1231 23 86 0 0 chr4 84679394 84679452 -70950668 + AT_rich Low_complexity Low_complexity 1 58 0 3 1231 21 0 0 0 chr4 84680586 84680607 -70949513 + AT_rich Low_complexity Low_complexity 1 21 0 3 1231 262 258 14 75 chr4 84680917 84681083 -70949037 + L1M3 LINE L1 5670 5823 -348 3 1231 36325 15 2 7 chr4 84681089 84686491 -70943629 + L1Md_A LINE L1 214 5586 -297 3 1231 8684 17 3 5 chr4 84686491 84687489 -70942631 + L1Md_A LINE L1 5587 6582 0 3 1231 288 233 136 0 chr4 84687503 84687606 -70942514 + L1MA4A LINE L1 5814 5930 -373 3 1231 482 184 0 8 chr4 84687609 84687735 -70942385 + (TA)n Simple_repeat Simple_repeat 1 125 0 3 1231 507 247 30 35 chr4 84687913 84688110 -70942010 + Lx6 LINE L1 7265 7460 0 3 1231 1603 102 8 4 chr4 84688228 84688464 -70941656 + L1_Mus3 LINE L1 6400 6636 -2 3 1231 1317 7 0 0 chr4 84688581 84688735 -70941385 + L1Md_A LINE L1 6429 6582 0 3 1231 22 0 0 0 chr4 84689118 84689140 -70940980 + AT_rich Low_complexity Low_complexity 1 22 0 3 1231 266 224 67 0 chr4 84689520 84689602 -70940518 - PB1D10 SINE Alu -31 118 30 3 1231 1835 52 0 4 chr4 84689731 84689961 -70940159 - L1Md_T LINE L1 0 6582 6354 3 1231 444 19 0 0 chr4 84690321 84690374 -70939746 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1231 24 53 0 0 chr4 84693513 84693551 -70936569 + AT_rich Low_complexity Low_complexity 1 38 0 3 1231 294 347 0 0 chr4 84693566 84693638 -70936482 - ID4 SINE ID -6 77 6 3 1231 235 266 31 0 chr4 84693678 84693742 -70936378 - B1F SINE Alu -10 139 74 3 1231 276 30 0 0 chr4 84693926 84693959 -70936161 + (TTC)n Simple_repeat Simple_repeat 2 34 0 3 1231 637 266 91 81 chr4 84693959 84694096 -70936024 - B4 SINE B4 -69 223 85 3 1231 612 0 0 0 chr4 84694096 84694164 -70935956 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1231 637 266 91 81 chr4 84694164 84694247 -70935873 - B4 SINE B4 -208 84 1 3 1231 407 252 78 0 chr4 84697473 84697588 -70932532 - ORR1D2 LTR MaLR -3 367 244 3 1231 788 242 168 31 chr4 84697692 84697948 -70932172 - ORR1D2 LTR MaLR -79 291 1 3 1231 450 0 0 0 chr4 84697976 84698026 -70932094 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1231 1090 57 0 0 chr4 84698031 84698171 -70931949 - B2_Mm2 SINE B2 -54 141 2 3 1231 429 261 106 0 chr4 84698205 84698347 -70931773 - LTR48 LTR ERV1 -630 157 1 3 1231 336 88 75 0 chr4 84698351 84698431 -70931689 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 3 1231 233 352 41 34 chr4 84698432 84698579 -70931541 + MER5B DNA MER1_type 25 172 -6 3 1231 261 352 179 7 chr4 84698650 84698790 -70931330 + RSINE1 SINE B4 2 165 0 3 1231 1185 211 56 178 chr4 84699374 84699823 -70930297 + MTD LTR MaLR 10 403 -16 3 1231 423 52 0 0 chr4 84700072 84700130 -70929990 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 3 1231 1147 95 6 11 chr4 84700130 84700311 -70929809 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1231 216 0 0 0 chr4 84700315 84700339 -70929781 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1231 323 85 0 33 chr4 84700350 84700411 -70929709 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 3 1231 719 231 15 90 chr4 84700417 84700617 -70929503 + ORR1C2 LTR MaLR 200 384 0 3 1231 327 235 49 0 chr4 84701034 84701115 -70929005 - PB1D10 SINE Alu -6 111 27 3 1231 511 298 112 48 chr4 84701147 84701456 -70928664 + MLT2B4 LTR ERVL 191 560 0 3 1231 685 284 12 40 chr4 84702310 84702529 -70927591 + MTD LTR MaLR 1 224 -195 3 1231 1230 103 22 0 chr4 84702659 84702844 -70927276 + B2_Mm2 SINE B2 3 191 -4 3 1231 228 322 0 0 chr4 84702895 84702954 -70927166 - L2a LINE L2 -20 3406 3348 3 1231 1141 189 14 0 chr4 84703214 84703436 -70926684 - URR1B DNA MER1_type 0 225 1 3 1231 237 272 24 12 chr4 84703449 84703531 -70926589 + Charlie15a DNA MER1_type 142 224 0 3 1231 221 316 158 20 chr4 84704663 84704866 -70925254 + L2a LINE L2 2458 2688 -731 3 1231 456 292 97 108 chr4 84705610 84705898 -70924222 + B4A SINE B4 2 286 -6 3 1231 2211 96 15 36 chr4 84706004 84706057 -70924063 - ORR1A2 LTR MaLR 0 327 275 3 1231 1223 55 0 0 chr4 84706057 84706203 -70923917 - B1_Mus2 SINE Alu -1 146 1 3 1231 2211 96 15 36 chr4 84706203 84706483 -70923637 - ORR1A2 LTR MaLR -53 274 1 3 1231 253 227 76 0 chr4 84706568 84706634 -70923486 - ID4 SINE ID -11 72 2 3 1231 200 296 74 0 chr4 84707059 84707113 -70923007 + L3 LINE CR1 4026 4083 -406 3 1231 1145 104 0 12 chr4 84707376 84707542 -70922578 - ORR1C2 LTR MaLR 0 384 221 3 1231 232 146 0 0 chr4 84707560 84707601 -70922519 + L1P5 LINE L1 5427 5467 -689 3 1231 1099 207 12 78 chr4 84707605 84707891 -70922229 - ORR1C2 LTR MaLR -144 240 3 3 1231 941 307 57 33 chr4 84707948 84708497 -70921623 - L1MA5 LINE L1 -376 5924 5350 3 1231 285 315 22 72 chr4 84708498 84708679 -70921441 + L2a LINE L2 3224 3395 -31 3 1231 213 146 0 0 chr4 84709029 84709077 -70921043 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1231 273 216 12 86 chr4 84709673 84709754 -70920366 + PB1D10 SINE Alu 41 115 -2 3 1231 280 319 60 18 chr4 84710948 84711114 -70919006 + L1MDa LINE L1 280 452 -6181 3 1231 399 89 0 0 chr4 84711148 84711204 -70918916 + (TCC)n Simple_repeat Simple_repeat 3 58 0 3 1231 265 326 107 17 chr4 84711312 84711721 -70918399 + L1MDa LINE L1 630 1095 -5538 3 1231 234 0 0 0 chr4 84711737 84711763 -70918357 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1231 285 29 0 0 chr4 84711763 84711796 -70918324 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1231 304 273 101 40 chr4 84711802 84711951 -70918169 + L1MDa LINE L1 1183 1340 -5293 3 1231 472 305 90 35 chr4 84712056 84712512 -70917608 + L1MDa LINE L1 5271 5751 -786 3 1231 252 314 14 0 chr4 84712856 84712926 -70917194 - B1F SINE Alu -43 106 36 3 1231 26 30 0 0 chr4 84713196 84713229 -70916891 + AT_rich Low_complexity Low_complexity 1 33 0 3 1231 1004 294 95 34 chr4 84713911 84713982 -70916138 + RCHARR1 DNA MER1_type 13 100 -874 3 1231 1150 71 0 0 chr4 84713982 84714123 -70915997 + B1_Mm SINE Alu 5 145 -2 3 1231 1004 294 95 34 chr4 84714123 84714149 -70915971 + RCHARR1 DNA MER1_type 101 117 -857 3 1231 1227 91 0 88 chr4 84714149 84714353 -70915767 + B2_Mm2 SINE B2 1 186 -9 3 1231 1004 299 269 27 chr4 84714353 84714827 -70915293 + RCHARR1 DNA MER1_type 118 706 -268 3 1231 358 240 67 0 chr4 84714970 84715074 -70915046 - RCHARR1 DNA MER1_type -164 810 700 3 1231 339 316 25 79 chr4 84715175 84715306 -70914814 - L1M5 LINE L1 -2099 4047 3927 3 1231 372 211 104 19 chr4 84715306 84715412 -70914708 - PB1D9 SINE Alu -1 119 5 3 1231 339 317 48 67 chr4 84715412 84715546 -70914574 - L1M5 LINE L1 -2220 3926 3776 3 1231 21 57 0 0 chr4 84716518 84716553 -70913567 + AT_rich Low_complexity Low_complexity 1 35 0 3 1231 187 372 39 10 chr4 84717184 84717287 -70912833 - MIRb SINE MIR -111 157 52 3 1231 1128 278 82 32 chr4 84717289 84717605 -70912515 - ORR1D2 LTR MaLR 0 370 39 3 1231 766 249 14 32 chr4 84717606 84717826 -70912294 + B3 SINE B2 1 216 0 3 1231 418 333 0 11 chr4 84717960 84718054 -70912066 - B3A SINE B2 -57 141 49 3 1231 1105 176 19 5 chr4 84718680 84718886 -70911234 + ORR1D1 LTR MaLR 1 209 -165 3 1231 405 0 0 0 chr4 84719053 84719098 -70911022 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1231 369 0 0 0 chr4 84719099 84719140 -70910980 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1231 1616 232 28 6 chr4 84719142 84719502 -70910618 - Lx6 LINE L1 -215 7245 6878 3 1231 4541 190 99 29 chr4 84719602 84720690 -70909430 - Lx5 LINE L1 -4 7046 5882 3 1231 726 229 25 107 chr4 84720829 84721025 -70909095 + ORR1D1 LTR MaLR 195 374 0 3 1231 189 0 0 0 chr4 84721886 84721907 -70908213 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1231 263 217 29 14 chr4 84723088 84723158 -70906962 - PB1D9 SINE Alu -14 106 36 3 1231 266 0 29 0 chr4 84723579 84723613 -70906507 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1231 213 122 20 39 chr4 84723670 84723721 -70906399 + A-rich Low_complexity Low_complexity 2 51 0 3 1231 22 0 0 0 chr4 84724320 84724342 -70905778 + AT_rich Low_complexity Low_complexity 1 22 0 3 1231 32 0 0 0 chr4 84724413 84724445 -70905675 + AT_rich Low_complexity Low_complexity 1 32 0 3 1231 248 275 125 66 chr4 84725191 84725343 -70904777 + RSINE1 SINE B4 5 165 0 3 1231 228 241 0 0 chr4 84725344 84725402 -70904718 + (TAA)n Simple_repeat Simple_repeat 1 58 0 3 1231 244 356 4 2 chr4 84725416 84725524 -70904596 + ID4_ SINE ID 1 107 -45 3 1231 183 42 0 0 chr4 84725935 84725959 -70904161 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1231 28 61 0 0 chr4 84726781 84726830 -70903290 + AT_rich Low_complexity Low_complexity 1 49 0 3 1231 253 329 53 0 chr4 84728036 84728112 -70902008 + B1F1 SINE Alu 3 82 -67 3 1231 303 49 0 0 chr4 84728115 84728156 -70901964 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1231 279 104 0 0 chr4 84728156 84728204 -70901916 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 3 1231 252 0 0 0 chr4 84728535 84728563 -70901557 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 3 1231 360 125 0 0 chr4 84728563 84728627 -70901493 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1231 974 79 0 14 chr4 84728645 84728787 -70901333 + (TCTCCC)n Simple_repeat Simple_repeat 6 145 0 3 1231 366 237 92 30 chr4 84729656 84729791 -70900329 + MLT1E1 LTR MaLR 415 634 -20 3 1231 494 325 0 62 chr4 84730213 84730341 -70899779 + RSINE1 SINE B4 6 125 -40 3 1231 815 207 135 24 chr4 84730341 84730549 -70899571 + RMER17B LTR ERVK 1 231 -727 3 1231 1334 298 135 8 chr4 84730523 84731004 -70899116 + MTE2b-int LTR MaLR 1034 1575 -5 3 1231 680 293 26 119 chr4 84731008 84731310 -70898810 + MTE2b LTR MaLR 1 274 -105 3 1231 520 180 91 30 chr4 84731310 84731442 -70898678 - MTD LTR MaLR -8 411 272 3 1231 461 252 35 18 chr4 84731442 84731555 -70898565 - MTD LTR MaLR -304 115 1 3 1231 768 202 40 64 chr4 84731555 84731804 -70898316 - MTD-int LTR MaLR 0 1258 1016 3 1231 2344 210 272 33 chr4 84731835 84732721 -70897399 - MTD-int LTR MaLR -155 1103 6 3 1231 799 223 46 0 chr4 84732731 84732906 -70897214 - MTD LTR MaLR -10 409 227 3 1231 511 220 10 0 chr4 84732901 84733001 -70897119 - MTD LTR MaLR -315 104 4 3 1231 320 238 99 0 chr4 84733001 84733101 -70897019 + MTE2b LTR MaLR 266 375 -4 3 1231 409 324 112 10 chr4 84733104 84733310 -70896810 - MLT1E1A LTR MaLR -304 376 150 3 1231 33 0 0 0 chr4 84733535 84733568 -70896552 + AT_rich Low_complexity Low_complexity 1 33 0 3 1231 230 245 37 28 chr4 84733717 84733826 -70896294 - L1MA8 LINE L1 -300 5991 5882 3 1231 519 265 32 38 chr4 84733834 84733991 -70896129 - RMER15 LTR ERVL -17 558 403 4 1231 305 330 9 0 chr4 84734143 84734249 -70895871 - Lx8 LINE L1 -311 7162 7056 4 1231 432 0 0 0 chr4 84734979 84735027 -70895093 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1231 514 256 191 38 chr4 84735028 84735122 -70894998 - ID_B1 SINE B4 -13 211 92 4 1231 1748 155 65 0 chr4 84735122 84735431 -70894689 + ORR1A4 LTR MaLR 1 329 0 4 1231 514 256 191 38 chr4 84735431 84735519 -70894601 - ID_B1 SINE B4 -133 91 2 4 1231 610 44 0 0 chr4 84735977 84736067 -70894053 + L1Md_F2 LINE L1 6487 6576 -6 4 1231 1679 141 100 7 chr4 84736161 84736461 -70893659 - ORR1A4 LTR MaLR 0 329 2 4 1231 839 289 168 35 chr4 84736596 84736937 -70893183 + Lx8 LINE L1 6810 7237 -236 4 1231 354 80 0 0 chr4 84736937 84736987 -70893133 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1231 839 289 168 35 chr4 84736987 84737216 -70892904 + Lx8 LINE L1 7238 7456 -17 4 1231 315 0 0 0 chr4 84738232 84738267 -70891853 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1231 28 29 0 0 chr4 84738421 84738456 -70891664 + AT_rich Low_complexity Low_complexity 1 35 0 4 1231 890 163 7 7 chr4 84740480 84740628 -70889492 + B1_Mur3 SINE Alu 1 148 -1 4 1231 641 290 100 36 chr4 84740664 84740965 -70889155 - MLT1B LTR MaLR -70 320 1 4 1231 332 328 69 74 chr4 84741950 84742309 -70887811 - MLT1F1 LTR MaLR -122 427 12 4 1231 30 69 0 0 chr4 84742481 84742539 -70887581 + AT_rich Low_complexity Low_complexity 1 58 0 4 1231 337 358 0 0 chr4 84743374 84743455 -70886665 + B1F SINE Alu 2 82 -67 4 1231 199 274 13 64 chr4 84743612 84743690 -70886430 + MIR SINE MIR 150 223 -39 4 1231 22 0 0 0 chr4 84743971 84743993 -70886127 + AT_rich Low_complexity Low_complexity 1 22 0 4 1231 183 80 0 0 chr4 84744446 84744471 -70885649 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1231 4974 79 61 14 chr4 84744471 84745255 -70884865 - Lx3_Mus LINE L1 -23 6986 6166 4 1231 351 44 0 0 chr4 84745312 84745357 -70884763 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1231 25 0 0 0 chr4 84745506 84745531 -70884589 + AT_rich Low_complexity Low_complexity 1 25 0 4 1231 1008 176 31 5 chr4 84745623 84745817 -70884303 - B3 SINE B2 -17 199 1 4 1231 1072 65 14 7 chr4 84747245 84747377 -70882743 + B1_Mus2 SINE Alu 5 138 -9 4 1231 190 0 32 32 chr4 84747377 84747408 -70882712 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1231 255 325 38 45 chr4 84747777 84747909 -70882211 + L2b LINE L2 3240 3370 -5 4 1231 503 222 184 35 chr4 84748284 84748450 -70881670 + B3A SINE B2 2 185 -10 4 1231 641 278 40 11 chr4 84749506 84749681 -70880439 + B3 SINE B2 8 187 -29 4 1231 343 308 88 6 chr4 84750206 84750402 -70879718 + MIRc SINE MIR 30 242 -20 4 1231 234 0 0 0 chr4 84751168 84751194 -70878926 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1231 303 262 23 35 chr4 84752487 84752574 -70877546 - MTEa LTR MaLR -8 371 286 4 1231 429 205 313 6 chr4 84752588 84752827 -70877293 - L1_Mur3 LINE L1 -706 5594 5305 4 1231 546 241 0 14 chr4 84752875 84753018 -70877102 - Lx9 LINE L1 -680 6964 6824 4 1231 26 0 0 0 chr4 84753238 84753264 -70876856 + AT_rich Low_complexity Low_complexity 1 26 0 4 1231 282 335 137 59 chr4 84753316 84753586 -70876534 + B4 SINE B4 2 292 0 4 1231 357 75 0 0 chr4 84753607 84753660 -70876460 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1231 384 259 83 32 chr4 84753729 84754018 -70876102 + L1M4 LINE L1 1671 2235 -4544 4 1231 206 23 93 0 chr4 84754018 84754061 -70876059 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 4 1231 255 292 61 18 chr4 84754217 84754381 -70875739 + L1M4 LINE L1 2371 2541 -4308 4 1231 754 59 0 1 chr4 84754444 84754563 -70875557 - L1Md_F LINE L1 -5765 1217 1100 4 1231 3911 35 0 0 chr4 84754566 84755026 -70875094 + L1Md_T LINE L1 6123 6582 0 4 1231 2155 266 179 30 chr4 84755468 84757117 -70873003 + L1M4 LINE L1 2843 4733 -2112 4 1231 723 311 61 28 chr4 84757270 84757807 -70872313 + L1M4 LINE L1 5039 5594 -1251 4 1231 189 0 0 0 chr4 84757807 84757828 -70872292 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1231 723 311 61 28 chr4 84757828 84757860 -70872260 + L1M4 LINE L1 5595 5627 -1218 4 1231 774 274 91 42 chr4 84757914 84758223 -70871897 - ORR1E LTR MaLR -7 352 29 4 1231 320 280 124 32 chr4 84758259 84758573 -70871547 + L1ME2z LINE L1 6069 6411 -33 4 1231 22 0 0 0 chr4 84758806 84758828 -70871292 + AT_rich Low_complexity Low_complexity 1 22 0 4 1231 5620 70 8 1 chr4 84758844 84759578 -70870542 - L1_Mus3 LINE L1 -3 6635 5897 4 1231 382 57 0 0 chr4 84759578 84759631 -70870489 + L1_Mus3 LINE L1 5855 5907 -731 4 1231 829 245 165 30 chr4 84759631 84759928 -70870192 + MTD LTR MaLR 83 419 0 4 1231 351 0 0 0 chr4 84760232 84760271 -70869849 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1231 226 367 58 0 chr4 84760882 84761002 -70869118 - Tigger13a DNA MER2_type -643 128 2 4 1231 453 19 0 0 chr4 84761686 84761740 -70868380 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1231 223 213 13 13 chr4 84761777 84761853 -70868267 + GA-rich Low_complexity Low_complexity 2 77 0 4 1231 471 258 25 16 chr4 84761876 84761998 -70868122 - PB1 SINE Alu -2 125 3 4 1231 612 236 122 25 chr4 84762022 84762218 -70867902 - B3 SINE B2 0 216 2 4 1231 324 64 0 0 chr4 84762305 84762352 -70867768 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 4 1231 252 0 0 0 chr4 84762733 84762761 -70867359 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1231 216 257 0 0 chr4 84763059 84763129 -70866991 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1231 852 176 0 0 chr4 84763723 84763888 -70866232 + GA-rich Low_complexity Low_complexity 1 165 0 4 1231 738 225 7 26 chr4 84763888 84764043 -70866077 - B3A SINE B2 -45 153 2 4 1231 676 239 58 74 chr4 84765775 84765965 -70864155 - B3A SINE B2 0 198 12 4 1231 25 83 0 0 chr4 84766140 84766200 -70863920 + AT_rich Low_complexity Low_complexity 1 60 0 4 1231 671 0 13 0 chr4 84766790 84766869 -70863251 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1231 189 0 0 0 chr4 84768625 84768646 -70861474 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1231 325 355 148 8 chr4 84768959 84769203 -70860917 + L1M4 LINE L1 5479 5756 -418 4 1231 198 71 0 0 chr4 84769209 84769237 -70860883 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1231 305 154 77 0 chr4 84770692 84770744 -70859376 + PB1D9 SINE Alu 1 56 -64 4 1231 2713 27 9 0 chr4 84771017 84771388 -70858732 + L1Md_F3 LINE L1 6225 6584 0 4 1231 1167 68 7 0 chr4 84771755 84771902 -70858218 + B1_Mus1 SINE Alu 1 148 0 4 1231 191 36 36 0 chr4 84771907 84771935 -70858185 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1231 601 268 0 85 chr4 84772148 84772348 -70857772 + B3A SINE B2 1 183 -15 4 1231 259 82 20 0 chr4 84772373 84772422 -70857698 + Lx2 LINE L1 6947 6996 -1 4 1231 32 26 0 0 chr4 84772837 84772876 -70857244 + AT_rich Low_complexity Low_complexity 1 39 0 4 1231 247 323 28 94 chr4 84772931 84773037 -70857083 - B3 SINE B2 -6 210 112 4 1231 407 256 155 80 chr4 84773002 84773253 -70856867 - B4A SINE B4 -15 277 8 4 1231 23 0 0 0 chr4 84773256 84773279 -70856841 + AT_rich Low_complexity Low_complexity 1 23 0 4 1231 691 279 41 73 chr4 84773293 84773634 -70856486 + Lx8 LINE L1 7058 7387 -86 4 1231 482 246 95 40 chr4 84776337 84776485 -70853635 - RSINE1 SINE B4 -7 158 3 4 1231 24 77 0 0 chr4 84776939 84776991 -70853129 + AT_rich Low_complexity Low_complexity 1 52 0 4 1231 794 348 112 28 chr4 84777651 84777988 -70852132 + Cheshire DNA MER1_type 2 358 -2062 4 1231 4171 136 51 33 chr4 84777988 84778690 -70851430 + Lx LINE L1 5940 6654 0 4 1231 794 348 112 28 chr4 84778690 84778993 -70851127 + Cheshire DNA MER1_type 359 696 -1724 4 1231 217 311 9 19 chr4 84779164 84779269 -70850851 + GA-rich Low_complexity Low_complexity 2 105 0 4 1231 237 333 112 19 chr4 84779302 84779409 -70850711 + MLT1D LTR MaLR 232 348 -157 4 1231 338 295 61 88 chr4 84779605 84779688 -70850432 + L1MD LINE L1 3859 3947 -2199 4 1231 365 307 65 7 chr4 84779688 84779842 -70850278 + RSINE1 SINE B4 3 165 0 4 1231 338 295 61 88 chr4 84779842 84780100 -70850020 + L1MD LINE L1 3948 4191 -1955 4 1231 449 282 103 15 chr4 84780146 84780409 -70849711 + L1MD LINE L1 4301 4586 -1560 4 1231 210 91 0 0 chr4 84780475 84780508 -70849612 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1231 308 296 126 26 chr4 84780551 84780742 -70849378 + L1MD LINE L1 4767 4976 -1170 4 1231 300 271 178 49 chr4 84780762 84780987 -70849133 + Lx8 LINE L1 7185 7438 -35 4 1231 210 71 0 0 chr4 84781002 84781030 -70849090 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1231 455 318 128 5 chr4 84781042 84781260 -70848860 - B4A SINE B4 -43 249 5 4 1231 255 255 142 81 chr4 84781295 84781555 -70848565 + L1MD LINE L1 5024 5299 -847 4 1231 306 235 44 56 chr4 84782082 84782172 -70847948 - L1M3 LINE L1 -462 5706 5618 4 1231 417 287 66 7 chr4 84783333 84783470 -70846650 + ID_B1 SINE B4 80 224 0 4 1231 480 229 57 8 chr4 84783348 84783471 -70846649 + B1_Mur1 SINE Alu 21 149 0 4 1231 252 0 0 0 chr4 84783487 84783515 -70846605 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1231 276 336 73 91 chr4 84783644 84783670 -70846450 + B4 SINE B4 1 26 -266 4 1231 1176 234 17 94 chr4 84783670 84784076 -70846044 + MTE2a LTR MaLR 2 376 -3 4 1231 276 336 73 91 chr4 84784076 84784281 -70845839 + B4 SINE B4 27 228 -64 4 1231 1310 64 0 0 chr4 84784295 84784466 -70845654 + L1_Mus2 LINE L1 6396 6566 0 4 1231 587 261 100 9 chr4 84784691 84784911 -70845209 + ERVL-B4-int LTR ERVL 3915 4154 -1603 4 1231 1110 301 104 8 chr4 84784947 84785342 -70844778 + ERVL-B4-int LTR ERVL 4224 4656 -1058 4 1231 856 283 81 8 chr4 84785338 84785598 -70844522 + ERVL-B4-int LTR ERVL 4766 5044 -670 4 1231 603 318 78 46 chr4 84785598 84785944 -70844176 + ORR1E LTR MaLR 3 359 0 4 1231 979 254 55 28 chr4 84785962 84786253 -70843867 + ERVL-B4-int LTR ERVL 5085 5383 -331 4 1231 271 230 192 12 chr4 84786272 84786439 -70843681 + MLT2B4 LTR ERVL 32 228 -328 4 1231 1784 218 91 78 chr4 84786834 84787319 -70842801 - Lx9 LINE L1 -2 7642 7163 4 1231 255 31 0 0 chr4 84787319 84787351 -70842769 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1231 1784 233 256 54 chr4 84787351 84787703 -70842417 - Lx9 LINE L1 -482 7162 6729 4 1231 833 152 23 0 chr4 84787747 84787918 -70842202 + CT-rich Low_complexity Low_complexity 2 176 0 4 1231 1634 199 112 2 chr4 84788121 84788606 -70841514 - RMER4B LTR ERVK -10 575 1 4 1231 855 121 0 0 chr4 84788636 84788777 -70841343 + URR1A DNA MER1_type 85 225 -1 5 1231 514 269 28 21 chr4 84788871 84789015 -70841105 + B1_Mur1 SINE Alu 3 147 -2 5 1231 534 287 164 36 chr4 84789030 84789359 -70840761 - L1MD2 LINE L1 -128 6231 5861 5 1231 241 297 153 87 chr4 84789621 84790079 -70840041 - L1MD2 LINE L1 -816 5330 4843 5 1231 2397 197 139 53 chr4 84790459 84791207 -70838913 + RLTR40 LTR ERVK 2 813 -4 5 1231 299 113 0 19 chr4 84791341 84791395 -70838725 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1231 560 328 8 12 chr4 84791395 84791636 -70838484 - Lx9 LINE L1 -152 7492 7253 5 1231 310 282 0 56 chr4 84791628 84791718 -70838402 - Lx9 LINE L1 -505 7139 7055 5 1231 216 0 0 0 chr4 84791723 84791747 -70838373 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1231 2418 285 33 14 chr4 84791765 84792460 -70837660 - Lx9 LINE L1 -594 7050 6343 5 1231 386 273 58 90 chr4 84792485 84792763 -70837357 - L1MD2 LINE L1 -1631 4515 4247 5 1231 1611 274 86 34 chr4 84793379 84793939 -70836181 - Lx8 LINE L1 -270 7203 6615 5 1231 1004 267 66 7 chr4 84793964 84794251 -70835869 - RMER15-int LTR ERVL -534 4465 4162 5 1231 351 0 0 0 chr4 84794288 84794327 -70835793 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1231 198 0 0 0 chr4 84794331 84794353 -70835767 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1231 1771 276 67 115 chr4 84794357 84795338 -70834782 + Lx5 LINE L1 6092 7031 -19 5 1231 460 286 144 16 chr4 84795373 84795561 -70834559 - L1M2 LINE L1 -1053 5090 4879 5 1231 270 224 0 95 chr4 84795569 84795643 -70834477 + MTE2b LTR MaLR 18 84 -295 5 1231 1058 279 4 30 chr4 84795647 84795910 -70834210 + MTE2b LTR MaLR 58 313 -66 5 1231 350 171 13 26 chr4 84795932 84796010 -70834110 + MTE2b LTR MaLR 301 377 -2 5 1231 1076 291 178 16 chr4 84796025 84796824 -70833296 - L1_Mur3 LINE L1 -1047 4833 3906 5 1231 431 146 0 24 chr4 84798656 84798740 -70831380 + (TATG)n Simple_repeat Simple_repeat 1 82 0 5 1231 577 277 135 12 chr4 84798741 84799000 -70831120 - B4 SINE B4 -1 291 1 5 1231 922 48 8 0 chr4 84799268 84799393 -70830727 - L1Md_A LINE L1 0 6582 6457 5 1231 1190 37 0 0 chr4 84799393 84799528 -70830592 + L1Md_F2 LINE L1 6250 6384 -198 5 1231 187 234 21 0 chr4 84800487 84800534 -70829586 + MIRb SINE MIR 163 210 -58 5 1231 245 70 47 0 chr4 84802066 84802109 -70828011 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 5 1231 818 239 221 3 chr4 84802145 84802439 -70827681 - MLT2B4 LTR ERVL -193 363 6 5 1231 369 226 78 44 chr4 84802584 84802740 -70827380 + B3A SINE B2 8 173 -22 5 1231 616 272 139 126 chr4 84802896 84803485 -70826635 + MER90a LTR ERV1 3 599 -15 5 1232 267 31 0 0 chr4 84805180 84805212 -70824908 + (TAG)n Simple_repeat Simple_repeat 1 32 0 5 1232 325 321 50 50 chr4 84805219 84805360 -70824760 - RSINE1 SINE B4 -13 152 12 5 1232 234 292 0 0 chr4 84805786 84805858 -70824262 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1232 287 288 190 16 chr4 84806445 84806692 -70823428 + L1MC3 LINE L1 7282 7571 -214 5 1232 256 261 31 52 chr4 84806763 84806860 -70823260 + L1MC3 LINE L1 7546 7640 -145 5 1232 209 0 97 0 chr4 84807165 84807196 -70822924 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1232 1158 65 0 7 chr4 84807335 84807489 -70822631 + L1_Mus1 LINE L1 6415 6567 0 5 1232 414 0 0 0 chr4 84808174 84808220 -70821900 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1232 21 0 0 0 chr4 84808637 84808658 -70821462 + GC_rich Low_complexity Low_complexity 1 21 0 5 1232 297 0 0 0 chr4 84809209 84809242 -70820878 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1232 236 377 34 14 chr4 84809726 84809874 -70820246 - MIR SINE MIR -68 194 44 5 1232 204 294 243 0 chr4 84810492 84810603 -70819517 - MIRc SINE MIR -107 161 20 5 1232 368 278 37 0 chr4 84810637 84810745 -70819375 + PB1D7 SINE Alu 1 112 -8 5 1232 8712 24 0 0 chr4 84811444 84812689 -70817431 - L1Md_A LINE L1 0 6582 5338 5 1232 1454 208 97 19 chr4 84813421 84813793 -70816327 - MTC LTR MaLR -3 418 18 5 1232 2052 194 61 76 chr4 84814012 84814605 -70815515 - RLTR31A_Mm LTR ERVK 0 584 1 5 1232 292 286 10 99 chr4 84814639 84814740 -70815380 - RMER30 DNA MER1_type -1 201 110 5 1232 1048 95 0 20 chr4 84814893 84815043 -70815077 + B1_Mus1 SINE Alu 2 148 0 5 1232 618 263 8 0 chr4 84815130 84815263 -70814857 - RSINE1 SINE B4 -26 139 6 5 1232 691 269 148 31 chr4 84815464 84815848 -70814272 - L1MB8 LINE L1 -187 5991 5563 5 1232 693 99 0 0 chr4 84817378 84817499 -70812621 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1232 594 273 67 37 chr4 84817611 84817881 -70812239 - RMER15 LTR ERVL -22 553 276 5 1232 305 216 37 64 chr4 84817882 84817991 -70812129 - RMER15 LTR ERVL -417 158 53 5 1232 1181 267 26 52 chr4 84818931 84819314 -70810806 - ORR1D1 LTR MaLR -1 373 1 5 1232 3069 197 98 5 chr4 84819333 84819996 -70810124 - Lx9 LINE L1 0 7644 6920 5 1232 2289 72 0 0 chr4 84820178 84820470 -70809650 - L1_Mus4 LINE L1 -689 5947 5656 5 1232 4034 160 17 7 chr4 84820470 84821163 -70808957 + Lx LINE L1 5955 6654 0 5 1232 313 310 17 8 chr4 84821864 84821981 -70808139 - Lx8 LINE L1 -3 7470 7353 5 1232 572 62 12 0 chr4 84822266 84822347 -70807773 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1232 1304 285 30 65 chr4 84823021 84823486 -70806634 - Lx8 LINE L1 -157 7316 6868 5 1232 575 62 0 12 chr4 84823504 84823585 -70806535 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 5 1232 425 250 153 28 chr4 84823585 84823729 -70806391 - Lx8 LINE L1 -764 6709 6548 5 1232 207 0 0 0 chr4 84824959 84824982 -70805138 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 5 1232 14098 89 20 66 chr4 84824982 84826236 -70803884 - Lx3_Mus LINE L1 -22 6987 5795 5 1232 2947 48 0 0 chr4 84826236 84826591 -70803529 - L1_Mus1 LINE L1 0 6567 6213 5 1232 14098 72 7 71 chr4 84826591 84828559 -70801561 - Lx3_Mus LINE L1 -89 5797 3887 5 1232 565 273 113 19 chr4 84828964 84829274 -70800846 + L1M5 LINE L1 3675 4013 -2133 5 1232 507 182 1 185 chr4 84829297 84829460 -70800660 - B1_Mur4 SINE Alu 0 150 17 5 1232 324 0 0 0 chr4 84829599 84829635 -70800485 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1232 549 341 58 18 chr4 84829694 84829972 -70800148 - B4A SINE B4 -2 290 2 5 1232 307 300 85 44 chr4 84830295 84830588 -70799532 + L1M5 LINE L1 2705 3009 -3137 5 1232 300 280 61 46 chr4 84830654 84830785 -70799335 + MLT1A1 LTR MaLR 13 145 -263 5 1232 3456 166 27 98 chr4 84830832 84831599 -70798521 + Lx7 LINE L1 6764 7476 -220 5 1232 4356 191 82 67 chr4 84831593 84832964 -70797156 - RMER1A Other Other -3 1027 7 5 1232 323 261 175 25 chr4 84833255 84833455 -70796665 + Lx7 LINE L1 7467 7696 0 5 1232 324 70 0 0 chr4 84833610 84833653 -70796467 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1232 1079 239 25 14 chr4 84834508 84834788 -70795332 + MTD LTR MaLR 137 419 0 5 1232 20668 70 7 5 chr4 84835088 84838693 -70791427 + L1Md_F2 LINE L1 280 3988 -1898 5 1232 4582 56 0 0 chr4 84838690 84839247 -70790873 + L1Md_F2 LINE L1 5033 5589 -297 5 1232 8272 45 2 2 chr4 84839247 84840242 -70789878 + L1Md_F2 LINE L1 5590 6584 -1 5 1232 2222 91 28 6 chr4 84840457 84840777 -70789343 + ORR1A2 LTR MaLR 1 327 0 5 1232 311 199 14 33 chr4 84840799 84840892 -70789228 + B1F2 SINE Alu 1 88 -29 5 1232 1243 166 32 5 chr4 84840943 84841161 -70788959 + URR1B DNA MER1_type 1 224 -1 5 1232 675 234 29 92 chr4 84841720 84841927 -70788193 + B3A SINE B2 9 202 -14 5 1232 22 35 0 0 chr4 84841927 84841956 -70788164 + AT_rich Low_complexity Low_complexity 1 29 0 5 1232 361 279 36 29 chr4 84842869 84843009 -70787111 - Tigger5 DNA MER2_type -8 2398 2258 5 1232 376 119 15 0 chr4 84843053 84843117 -70787003 - MTC LTR MaLR -309 70 2 5 1232 354 255 20 0 chr4 84843130 84843232 -70786888 - Tigger5 DNA MER2_type -168 2238 2135 5 1232 384 311 36 42 chr4 84843470 84843638 -70786482 + MLT1C LTR MaLR 1 167 -300 5 1232 605 292 32 16 chr4 84843652 84843840 -70786280 - B3A SINE B2 -7 191 1 5 1232 572 242 35 56 chr4 84844039 84844236 -70785884 + B3A SINE B2 3 195 -3 5 1232 183 77 0 0 chr4 84844546 84844572 -70785548 - MER5A DNA MER1_type -22 167 142 5 1232 369 0 0 0 chr4 84844780 84844821 -70785299 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 1232 965 87 0 26 chr4 84844821 84844974 -70785146 - B2_Mm2 SINE B2 -34 161 13 5 1232 612 0 0 0 chr4 84845224 84845292 -70784828 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1232 1338 143 5 0 chr4 84849320 84849537 -70780583 + URR1B DNA MER1_type 1 218 -7 5 1232 22 35 0 0 chr4 84851348 84851377 -70778743 + GC_rich Low_complexity Low_complexity 1 29 0 5 1232 925 135 136 25 chr4 84852613 84852811 -70777309 - Lx3C LINE L1 0 6976 6757 5 1232 387 0 0 0 chr4 84853182 84853225 -70776895 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 5 1232 1795 152 105 38 chr4 84854414 84854757 -70775363 - ORR1B2 LTR MaLR 0 367 2 5 1232 882 322 68 30 chr4 84854848 84855287 -70774833 - MLT1C LTR MaLR -2 465 10 5 1232 441 294 167 24 chr4 84855400 84855693 -70774427 + MLT1A0 LTR MaLR 1 335 -30 5 1232 297 226 81 35 chr4 84855714 84855801 -70774319 - MLT1A1 LTR MaLR -16 392 302 5 1232 504 0 0 0 chr4 84856599 84856655 -70773465 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 5 1232 793 169 6 6 chr4 84856655 84856816 -70773304 + CT-rich Low_complexity Low_complexity 3 163 0 5 1232 235 145 0 75 chr4 84856818 84856885 -70773235 - B2_Mm2 SINE B2 0 195 134 5 1232 443 134 12 0 chr4 84858110 84858192 -70771928 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1232 566 231 53 37 chr4 84858223 84858412 -70771708 - Lx4B LINE L1 -4 7054 6863 5 1232 744 281 19 29 chr4 84858517 84858726 -70771394 - ORR1D2 LTR MaLR -135 235 29 5 1232 505 268 143 37 chr4 84858728 84858972 -70771148 + B4 SINE B4 5 274 -18 5 1232 363 44 0 0 chr4 84858979 84859024 -70771096 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1232 402 115 0 0 chr4 84859025 84859086 -70771034 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1232 2413 278 87 40 chr4 84859541 84860497 -70769623 + Lx8 LINE L1 6469 7469 -4 5 1232 604 319 102 38 chr4 84860501 84860710 -70769410 + MLT1E2 LTR MaLR 176 393 -234 5 1232 396 0 0 0 chr4 84860710 84860754 -70769366 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 5 1232 604 319 102 38 chr4 84860754 84860965 -70769155 + MLT1E2 LTR MaLR 394 622 -5 5 1232 324 273 33 0 chr4 84861113 84861213 -70768907 + PB1D7 SINE Alu 10 112 -8 6 1232 3041 82 0 26 chr4 84863570 84863986 -70766134 - MTB_Mm LTR MaLR -2 405 1 6 1232 640 291 196 38 chr4 84864623 84865066 -70765054 - MLT2B3 LTR ERVL -40 514 2 6 1232 306 260 0 38 chr4 84865143 84865223 -70764897 - PB1D10 SINE Alu -28 89 13 6 1232 1076 293 65 43 chr4 84865442 84865995 -70764125 + MER21B LTR ERV1 2 566 -297 6 1232 3400 192 82 83 chr4 84866009 84866939 -70763181 - Lx7 LINE L1 -22 7674 6803 6 1232 1348 202 107 14 chr4 84866934 84867281 -70762839 - Lx7 LINE L1 -1691 6005 5627 6 1232 4061 161 149 47 chr4 84867279 84868220 -70761900 - Lx7 LINE L1 -843 5037 4001 6 1232 382 285 136 70 chr4 84868224 84868496 -70761624 + MER21B LTR ERV1 568 857 -6 6 1232 282 246 0 0 chr4 84869560 84869625 -70760495 + L2c LINE L2 3320 3384 -3 6 1232 468 0 0 0 chr4 84869684 84869736 -70760384 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 6 1232 1101 52 0 7 chr4 84869736 84869871 -70760249 - B1_Mus1 SINE Alu -14 134 1 6 1232 483 237 57 38 chr4 84870010 84870168 -70759952 - MIRb SINE MIR -76 192 28 6 1232 281 254 47 3 chr4 84870429 84870507 -70759613 - B1F2 SINE Alu -10 110 31 6 1232 332 228 167 95 chr4 84872192 84872318 -70757802 - RSINE1 SINE B4 0 165 31 6 1232 450 0 0 0 chr4 84873237 84873287 -70756833 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1232 273 306 42 0 chr4 84873315 84873387 -70756733 - ID4_ SINE ID -6 77 3 6 1232 337 191 0 29 chr4 84873503 84873573 -70756547 - tRNA-Ala-GCY_ tRNA tRNA 0 75 8 6 1232 323 247 0 0 chr4 84873513 84873586 -70756534 - ID4_ SINE ID -10 73 1 6 1232 180 0 0 0 chr4 84874204 84874224 -70755896 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1232 341 223 104 21 chr4 84875228 84875324 -70754796 - PB1D9 SINE Alu -15 105 2 6 1232 459 0 0 0 chr4 84875654 84875705 -70754415 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1232 292 328 40 24 chr4 84876711 84876836 -70753284 - MIR SINE MIR -82 180 54 6 1232 213 167 24 0 chr4 84877699 84877741 -70752379 + T-rich Low_complexity Low_complexity 2 44 0 6 1232 427 285 46 0 chr4 84877751 84877881 -70752239 - B1F2 SINE Alu -11 138 3 6 1232 636 120 0 0 chr4 84877914 84878014 -70752106 + (TCC)n Simple_repeat Simple_repeat 1 100 0 6 1232 677 98 7 40 chr4 84879367 84879516 -70750604 + (TTCTC)n Simple_repeat Simple_repeat 2 145 0 6 1232 492 123 12 12 chr4 84879516 84879598 -70750522 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 6 1232 4505 12 2 0 chr4 84880183 84880675 -70749445 - MT2_Mm LTR ERVL 0 493 1 6 1232 321 0 0 0 chr4 84880675 84880713 -70749407 - MERVL-int LTR ERVL 0 5485 5448 6 1232 375 123 13 40 chr4 84880713 84880789 -70749331 - ORR1A3-int LTR MaLR -1323 640 567 6 1232 48391 16 6 0 chr4 84880789 84886127 -70743993 - MERVL-int LTR ERVL -114 5371 1 6 1232 4491 14 2 0 chr4 84886127 84886619 -70743501 - MT2_Mm LTR ERVL 0 493 1 6 1232 723 183 189 0 chr4 84888176 84888345 -70741775 - Lx9 LINE L1 -845 6799 6599 6 1232 1376 217 101 27 chr4 84888344 84888709 -70741411 + Lx9 LINE L1 6206 6597 -1047 6 1232 212 59 29 0 chr4 84889610 84889644 -70740476 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1232 360 0 0 0 chr4 84889706 84889746 -70740374 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1232 5355 60 5 12 chr4 84889980 84890642 -70739478 - L1Md_F2 LINE L1 -1 6581 5925 6 1232 1847 38 0 0 chr4 84890642 84891058 -70739062 + L1Md_Gf LINE L1 919 1431 -4455 6 1232 27 0 0 0 chr4 84891653 84891680 -70738440 + GC_rich Low_complexity Low_complexity 1 27 0 6 1232 294 266 14 25 chr4 84892136 84892221 -70737899 - RSINE1 SINE B4 -205 87 3 6 1232 294 29 0 0 chr4 84892244 84892279 -70737841 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1232 2414 175 65 17 chr4 84892413 84892815 -70737305 - MTC LTR MaLR 0 421 1 6 1232 641 251 135 48 chr4 84893223 84893474 -70736646 - B4A SINE B4 0 292 20 6 1232 261 0 0 0 chr4 84893691 84893720 -70736400 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1232 310 291 6 122 chr4 84894970 84895142 -70734978 - L1MB8 LINE L1 -16 6162 6011 6 1232 753 296 0 22 chr4 84895267 84895447 -70734673 - B3A SINE B2 -22 176 1 6 1232 349 243 28 18 chr4 84895447 84895556 -70734564 - L1MB8 LINE L1 -237 5941 5832 6 1232 243 0 0 0 chr4 84896622 84896649 -70733471 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 1232 279 271 62 0 chr4 84897381 84897477 -70732643 - LTR86B2 LTR ERVL -293 194 93 6 1232 465 158 0 0 chr4 84897790 84897910 -70732210 + CT-rich Low_complexity Low_complexity 2 121 0 6 1232 207 0 0 0 chr4 84897911 84897934 -70732186 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1232 852 120 0 0 chr4 84898546 84898761 -70731359 + (GA)n Simple_repeat Simple_repeat 1 215 0 6 1232 273 131 0 0 chr4 84898763 84898796 -70731324 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1232 192 40 0 0 chr4 84898796 84898821 -70731299 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 6 1232 273 131 0 0 chr4 84898821 84898838 -70731282 + (TG)n Simple_repeat Simple_repeat 1 17 0 6 1232 261 0 0 0 chr4 84898838 84898867 -70731253 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1232 273 131 0 0 chr4 84898867 84898876 -70731244 + (TG)n Simple_repeat Simple_repeat 2 10 0 6 1232 23 0 0 0 chr4 84899091 84899114 -70731006 + AT_rich Low_complexity Low_complexity 1 23 0 6 1232 606 170 0 0 chr4 84899129 84899235 -70730885 - B1_Mur3 SINE Alu -7 142 37 6 1232 294 167 16 48 chr4 84899180 84899243 -70730877 - 4.5SRNA scRNA scRNA -8 86 26 6 1232 22 35 0 0 chr4 84899274 84899303 -70730817 + AT_rich Low_complexity Low_complexity 1 29 0 6 1232 27 0 0 0 chr4 84899382 84899409 -70730711 + AT_rich Low_complexity Low_complexity 1 27 0 6 1232 229 371 56 22 chr4 84899731 84899910 -70730210 - MIR SINE MIR -34 228 44 6 1232 436 259 48 20 chr4 84900446 84900592 -70729528 + B3A SINE B2 38 187 -11 6 1232 1785 232 104 28 chr4 84901317 84901846 -70728274 + Lx9 LINE L1 6847 7415 -229 6 1232 360 0 0 0 chr4 84901908 84901948 -70728172 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1232 272 146 202 10 chr4 84901954 84902058 -70728062 + Lx9 LINE L1 7516 7639 -5 6 1232 511 175 8 8 chr4 84904213 84904334 -70725786 + CT-rich Low_complexity Low_complexity 3 123 0 6 1232 231 220 203 0 chr4 84904338 84904397 -70725723 + ID4 SINE ID 3 73 -10 6 1232 227 271 86 0 chr4 84904901 84904971 -70725149 - MIRb SINE MIR -178 90 15 6 1232 638 106 19 0 chr4 84904999 84905103 -70725017 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 6 1232 350 289 50 88 chr4 84905206 84905388 -70724732 - B4A SINE B4 -117 175 1 6 1232 288 274 62 21 chr4 84907772 84907869 -70722251 - PB1D10 SINE Alu -7 110 10 6 1232 408 125 0 0 chr4 84908984 84909048 -70721072 + (A)n Simple_repeat Simple_repeat 1 64 0 6 1232 2017 118 71 62 chr4 84910659 84910983 -70719137 + ORR1A2 LTR MaLR 1 327 0 6 1232 23 33 0 0 chr4 84912857 84912887 -70717233 + AT_rich Low_complexity Low_complexity 1 30 0 6 1232 1517 191 154 22 chr4 84913361 84913731 -70716389 - MTD LTR MaLR 0 419 1 6 1232 530 41 14 0 chr4 84914376 84914449 -70715671 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1232 1249 55 7 0 chr4 84914478 84914623 -70715497 + B1_Mm SINE Alu 1 146 -1 6 1232 297 0 0 0 chr4 84914801 84914834 -70715286 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1232 441 0 0 0 chr4 84914834 84914882 -70715238 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1232 426 94 0 0 chr4 84915196 84915260 -70714860 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1232 465 233 47 28 chr4 84915352 84915458 -70714662 + RSINE1 SINE B4 8 115 -50 6 1232 555 43 0 0 chr4 84916117 84916187 -70713933 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1232 251 264 26 78 chr4 84917132 84917247 -70712873 + MLT1A1 LTR MaLR 289 397 -11 6 1232 540 0 0 0 chr4 84917467 84917527 -70712593 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1232 309 159 0 64 chr4 84919856 84919950 -70710170 + (CCA)n Simple_repeat Simple_repeat 1 88 0 6 1232 393 75 0 0 chr4 84920011 84920064 -70710056 + (CCA)n Simple_repeat Simple_repeat 1 53 0 6 1232 3846 114 30 5 chr4 84920332 84920932 -70709188 + RMER12 LTR ERVK 1 615 -707 6 1232 399 194 36 38 chr4 84920932 84921038 -70709082 + RMER12 LTR ERVK 1089 1249 -73 6 1232 851 292 49 11 chr4 84921161 84921424 -70708696 + B4 SINE B4 1 273 -19 6 1232 1284 259 76 32 chr4 84922214 84922685 -70707435 + RMER5 LTR ERV1 33 524 -10 6 1232 2180 100 26 13 chr4 84923020 84923333 -70706787 + L1_Mus3 LINE L1 6322 6638 0 6 1232 437 218 0 40 chr4 84923579 84923756 -70706364 + CT-rich Low_complexity Low_complexity 1 170 0 6 1232 685 171 131 8 chr4 84923777 84923907 -70706213 - B1_Mur1 SINE Alu -1 148 3 6 1232 610 224 109 28 chr4 84924192 84924370 -70705750 - MTEb LTR MaLR -8 371 163 6 1232 594 109 0 0 chr4 84924370 84924462 -70705658 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 1232 309 291 38 3 chr4 84924481 84924593 -70705527 - MTEb LTR MaLR -228 151 37 6 1232 262 345 26 17 chr4 84925658 84925773 -70704347 + MIRc SINE MIR 115 230 -38 6 1232 23 0 0 0 chr4 84925941 84925964 -70704156 + AT_rich Low_complexity Low_complexity 1 23 0 6 1232 6439 213 60 18 chr4 84925967 84927572 -70702548 - Lx9 LINE L1 -1 7643 5843 6 1232 3162 211 48 28 chr4 84927630 84928030 -70702090 - Lx9 LINE L1 -198 5649 5251 6 1232 231 36 0 0 chr4 84928030 84928058 -70702062 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1232 3162 211 48 28 chr4 84928058 84928476 -70701644 - Lx9 LINE L1 -597 5250 4815 6 1232 2516 94 35 8 chr4 84929029 84929404 -70700716 - RLTR44E LTR ERVK -59 393 9 6 1232 2153 301 99 53 chr4 84930608 84931511 -70698609 - Lx8 LINE L1 -2 7471 6528 6 1232 2792 204 121 42 chr4 84931511 84932055 -70698065 + RLTR40 LTR ERVK 1 568 -249 6 1232 353 22 22 0 chr4 84932055 84932101 -70698019 + (CAGA)n Simple_repeat Simple_repeat 3 49 0 6 1232 2792 204 121 42 chr4 84932101 84932302 -70697818 + RLTR40 LTR ERVK 569 804 -13 6 1232 698 243 7 0 chr4 84932307 84932455 -70697665 - Lx8 LINE L1 -941 6532 6384 6 1232 180 0 0 0 chr4 84932464 84932484 -70697636 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6 1232 1333 217 179 40 chr4 84932484 84932570 -70697550 - RLTR20C LTR ERVK -1 550 459 6 1232 378 0 0 0 chr4 84932570 84932612 -70697508 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1232 1455 191 121 59 chr4 84932612 84933004 -70697116 - RLTR20C LTR ERVK -93 458 5 6 1232 258 116 0 0 chr4 84933004 84933047 -70697073 + (ATG)n Simple_repeat Simple_repeat 3 45 0 6 1232 324 314 38 0 chr4 84933069 84933174 -70696946 - Lx8 LINE L1 -1167 6306 6198 6 19 3044 268 43 55 chr4 84933209 84934713 -70695407 - Lx8 LINE L1 -1629 6015 4497 6 1233 3708 55 20 6 chr4 84934713 84935202 -70694918 - LTRIS2 LTR ERV1 0 564 69 6 1233 874 264 135 18 chr4 84935217 84935603 -70694517 - L1_Mur3 LINE L1 -1356 4524 4094 7 1233 31 44 0 0 chr4 84936778 84936823 -70693297 + AT_rich Low_complexity Low_complexity 1 45 0 7 1233 374 208 69 0 chr4 84938220 84938292 -70691828 - BC1_Mm scRNA scRNA -71 81 5 7 1233 492 285 171 27 chr4 84938458 84938757 -70691363 - L1MD2 LINE L1 -444 5915 5574 7 1233 534 31 0 0 chr4 84938882 84938946 -70691174 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1233 209 300 0 0 chr4 84939172 84939232 -70690888 - MER5A DNA MER1_type -21 168 109 7 1233 280 296 26 52 chr4 84941259 84941412 -70688708 - MLT1H LTR MaLR -30 519 371 7 1233 558 0 0 0 chr4 84941813 84941875 -70688245 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 7 1233 185 0 40 0 chr4 84941952 84941977 -70688143 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 7 1233 867 271 121 96 chr4 84942013 84942483 -70687637 - Lx7 LINE L1 -718 6978 6497 7 1233 340 285 135 36 chr4 84942497 84942690 -70687430 - Lx7 LINE L1 -1413 6283 6072 7 1233 3455 264 58 50 chr4 84942781 84943250 -70686870 - Lx7 LINE L1 -1593 6103 5615 7 1233 468 0 0 0 chr4 84943250 84943302 -70686818 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1233 3455 256 50 51 chr4 84943302 84944378 -70685742 - Lx7 LINE L1 -266 5614 4548 7 1233 1126 48 7 33 chr4 84945367 84945518 -70684602 - B1_Mm SINE Alu 0 147 1 7 1233 363 44 0 0 chr4 84945876 84945921 -70684199 + (TTGG)n Simple_repeat Simple_repeat 1 45 0 7 1233 666 204 23 0 chr4 84945921 84946053 -70684067 - B1_Mus2 SINE Alu -8 139 5 7 1233 1038 262 128 14 chr4 84946320 84946672 -70683448 - RCHARR1 DNA MER1_type -582 392 1 7 1233 408 20 0 0 chr4 84946766 84946815 -70683305 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1233 753 89 0 0 chr4 84946815 84946938 -70683182 + (GA)n Simple_repeat Simple_repeat 1 124 0 7 1233 320 284 80 83 chr4 84947115 84947415 -70682705 + L1MCc LINE L1 1150 1448 -4975 7 1233 1129 87 105 0 chr4 84947441 84947613 -70682507 + B2_Mm2 SINE B2 1 190 -5 7 1233 288 53 0 0 chr4 84948298 84948336 -70681784 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1233 234 371 64 29 chr4 84948393 84948565 -70681555 - MLT2C1 LTR ERVL -40 357 180 7 1233 21 0 0 0 chr4 84948974 84948995 -70681125 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 21 0 0 0 chr4 84949057 84949078 -70681042 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 183 329 11 23 chr4 84949099 84949186 -70680934 + L3b LINE CR1 298 383 -99 7 1233 499 169 16 33 chr4 84949860 84950043 -70680077 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1233 764 314 102 53 chr4 84950518 84951331 -70678789 + L1MC3 LINE L1 6708 7560 -225 7 1233 241 326 94 40 chr4 84951724 84951925 -70678195 + L2a LINE L2 3208 3419 -7 7 1233 276 354 9 5 chr4 84953285 84953495 -70676625 - Lx9 LINE L1 -127 7517 7307 7 1233 3884 69 42 6 chr4 84954106 84954628 -70675492 - L1Md_F2 LINE L1 0 6582 6042 7 1233 284 303 67 27 chr4 84956020 84956169 -70673951 + RSINE1 SINE B4 3 157 -8 7 1233 708 119 0 0 chr4 84956191 84956300 -70673820 + (CA)n Simple_repeat Simple_repeat 2 110 0 7 1233 369 198 0 0 chr4 84956300 84956416 -70673704 + GA-rich Low_complexity Low_complexity 1 116 0 7 1233 256 164 67 180 chr4 84957492 84957545 -70672575 - PB1D10 SINE Alu -15 102 55 7 1233 354 23 0 0 chr4 84957545 84957588 -70672532 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1233 256 164 67 180 chr4 84957588 84957623 -70672497 - PB1D10 SINE Alu -63 54 24 7 1233 1008 111 0 14 chr4 84957892 84958038 -70672082 + B1_Mur4 SINE Alu 5 148 -2 7 1233 678 282 24 51 chr4 84959805 84960017 -70670103 - B3A SINE B2 -3 213 1 7 1233 633 49 0 0 chr4 84960358 84960439 -70669681 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1233 1549 256 77 93 chr4 84960796 84961487 -70668633 - Lx8 LINE L1 -151 7322 6635 7 1233 195 42 0 0 chr4 84961487 84961511 -70668609 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 7 1233 1549 256 77 93 chr4 84961511 84961678 -70668442 - Lx8 LINE L1 -839 6634 6478 7 1233 254 376 21 0 chr4 84961916 84962057 -70668063 + Lx8 LINE L1 7123 7266 -207 7 1233 216 0 0 0 chr4 84962059 84962083 -70668037 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1233 419 319 97 107 chr4 84962147 84962382 -70667738 - MLT1C LTR MaLR -56 411 183 7 1233 909 199 64 39 chr4 84962382 84962586 -70667534 - B3 SINE B2 -6 210 2 7 1233 419 319 97 107 chr4 84962586 84962733 -70667387 - MLT1C LTR MaLR -285 182 33 7 1233 270 264 0 21 chr4 84962809 84962902 -70667218 + L1M5 LINE L1 2263 2353 -3862 7 1233 486 46 0 0 chr4 84963033 84963098 -70667022 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1233 434 329 77 73 chr4 84963110 84963369 -70666751 - B4 SINE B4 -17 275 16 7 1233 621 212 51 29 chr4 84963415 84963590 -70666530 - Lx7 LINE L1 -1 7695 7517 7 1233 267 146 0 0 chr4 84965464 84965519 -70664601 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 7 1233 792 171 27 0 chr4 84965519 84965665 -70664455 - B1_Mur4 SINE Alu 0 150 1 7 1233 25 31 0 0 chr4 84965917 84965949 -70664171 + AT_rich Low_complexity Low_complexity 1 32 0 7 1233 462 36 0 0 chr4 84966171 84966227 -70663893 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1233 297 0 0 0 chr4 84968415 84968448 -70661672 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1233 200 35 35 0 chr4 84968610 84968639 -70661481 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 7 1233 2972 87 73 2 chr4 84968830 84969266 -70660854 + Lx2 LINE L1 6530 6996 -1 7 1233 310 296 78 73 chr4 84970407 84970611 -70659509 - L2c LINE L2 0 3387 3183 7 1233 813 21 0 0 chr4 84972348 84972443 -70657677 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 7 1233 3538 66 0 13 chr4 84973240 84973715 -70656405 + L1Md_F2 LINE L1 6114 6582 0 7 1233 596 251 106 27 chr4 84973930 84974118 -70656002 + MTE2a LTR MaLR 134 336 -43 7 1233 298 305 45 116 chr4 84974269 84974299 -70655821 - ID_B1 SINE B4 -52 240 165 7 1233 525 297 0 15 chr4 84974299 84974429 -70655691 - B1_Mur1 SINE Alu -10 139 12 7 1233 298 305 45 116 chr4 84974429 84974479 -70655641 - ID_B1 SINE B4 -52 164 31 7 1233 428 192 0 10 chr4 84975515 84975615 -70654505 + (TA)n Simple_repeat Simple_repeat 2 100 0 7 1233 459 0 0 0 chr4 84975946 84975997 -70654123 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1233 326 277 229 19 chr4 84976328 84976538 -70653582 - RMER15 LTR ERVL -17 558 305 7 1233 269 302 77 8 chr4 84976536 84976653 -70653467 - RMER15 LTR ERVL -450 125 1 7 1233 1423 321 28 86 chr4 84976653 84977516 -70652604 - RMER15-int LTR ERVL -26 4973 4161 7 1233 458 273 78 21 chr4 84978169 84978311 -70651809 - RMER15-int LTR ERVL -3695 1304 1155 7 1233 307 355 39 7 chr4 84978330 84978483 -70651637 + L1M5 LINE L1 5462 5619 -621 7 1233 642 291 30 161 chr4 84978486 84978847 -70651273 - MTEa LTR MaLR -8 371 58 7 1233 254 286 111 0 chr4 84978861 84978924 -70651196 + RSINE1 SINE B4 68 137 -28 7 1233 279 54 0 0 chr4 84978963 84979000 -70651120 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 7 1233 263 268 111 44 chr4 84979051 84979141 -70650979 - MTEa LTR MaLR -283 96 1 7 1233 1079 90 0 0 chr4 84980900 84981044 -70649076 + B1_Mus1 SINE Alu 5 148 0 7 1233 1624 32 0 0 chr4 84981885 84982070 -70648050 - B2_Mm1t SINE B2 -7 186 2 7 1233 195 129 0 0 chr4 84983021 84983052 -70647068 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 7 1233 429 277 50 8 chr4 84983106 84983226 -70646894 + B1F2 SINE Alu 12 136 -13 7 1233 189 0 0 0 chr4 84983226 84983247 -70646873 + (GGAAA)n Simple_repeat Simple_repeat 3 23 0 7 1233 412 282 104 97 chr4 84983354 84983613 -70646507 - MLT2C1 LTR ERVL -5 392 132 7 1233 1290 158 0 9 chr4 84984594 84984817 -70645303 + URR1B DNA MER1_type 1 221 -4 7 1233 22 0 0 0 chr4 84985705 84985727 -70644393 + AT_rich Low_complexity Low_complexity 1 22 0 7 1233 30 0 0 0 chr4 84985950 84985980 -70644140 + AT_rich Low_complexity Low_complexity 1 30 0 7 1233 31 0 0 0 chr4 84986057 84986088 -70644032 + AT_rich Low_complexity Low_complexity 1 31 0 7 1233 21 0 0 0 chr4 84987121 84987142 -70642978 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 190 81 0 51 chr4 84987707 84987746 -70642374 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 1233 1359 260 135 77 chr4 84987843 84988456 -70641664 + Lx6 LINE L1 6785 7433 -27 7 1233 3143 61 2 8 chr4 84988497 84988895 -70641225 - MTA_Mm LTR MaLR 0 396 1 7 1233 7600 86 5 55 chr4 84988895 84990050 -70640070 - MTA_Mm-int LTR MaLR 0 1098 1 7 1233 3212 56 2 5 chr4 84990050 84990447 -70639673 - MTA_Mm LTR MaLR 0 396 1 7 1233 342 0 0 0 chr4 84990996 84991034 -70639086 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1233 284 0 28 0 chr4 84991136 84991172 -70638948 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1233 265 266 48 44 chr4 84992747 84992856 -70637264 + MIRc SINE MIR 4 110 -158 7 1233 188 229 68 54 chr4 84993484 84993558 -70636562 + MIR3 SINE MIR 5 79 -129 7 1233 288 343 82 71 chr4 84995505 84995772 -70634348 - L2b LINE L2 0 3375 3106 7 1233 255 61 0 0 chr4 84998063 84998096 -70632024 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 7 1233 1893 191 47 8 chr4 84998096 84998460 -70631660 - Lx5 LINE L1 -19 7031 6654 7 1233 354 324 9 37 chr4 84998516 84998625 -70631495 - B4A SINE B4 -185 107 2 7 1233 463 254 31 31 chr4 85000758 85000888 -70629232 - RSINE1 SINE B4 -24 141 12 1 1233 660 26 0 0 chr4 85002095 85002173 -70627947 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1233 3697 297 99 32 chr4 85002785 85002901 -70627219 - Lx8 LINE L1 -1 7472 7349 3 1233 288 0 0 0 chr4 85002901 85002933 -70627187 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1233 3697 297 99 32 chr4 85002933 85004284 -70625836 - Lx8 LINE L1 -125 7348 5924 3 1233 3014 63 34 8 chr4 85004284 85004670 -70625450 - MTA_Mm LTR MaLR 0 396 1 5 1233 477 0 0 0 chr4 85004679 85004732 -70625388 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1233 3697 283 109 65 chr4 85004732 85006895 -70623225 - Lx8 LINE L1 -1559 5914 3697 3 1233 279 0 0 0 chr4 85006895 85006926 -70623194 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1233 3689 283 109 65 chr4 85006926 85007315 -70622805 - Lx8 LINE L1 -2184 3696 3246 3 1233 394 291 85 97 chr4 85007372 85007631 -70622489 + B4 SINE B4 2 257 -35 8 1233 881 200 54 24 chr4 85007628 85007833 -70622287 - ORR1C2 LTR MaLR -7 377 167 9 1233 270 176 0 0 chr4 85007833 85007884 -70622236 + GA-rich Low_complexity Low_complexity 2 52 0 1 1233 824 193 0 130 chr4 85007899 85008107 -70622013 - ORR1C2 LTR MaLR -203 181 1 9 1233 259 292 18 119 chr4 85008109 85008218 -70621902 - MIRb SINE MIR -178 98 1 1 1233 1672 173 126 8 chr4 85010613 85011010 -70619110 - RLTR40 LTR ERVK -366 451 8 1 1233 295 294 58 71 chr4 85011090 85011244 -70618876 + MLT1E1 LTR MaLR 389 540 -114 1 1233 29 0 0 0 chr4 85012371 85012400 -70617720 + AT_rich Low_complexity Low_complexity 1 29 0 1 1233 626 245 63 5 chr4 85012401 85012590 -70617530 + B3 SINE B2 10 209 -7 1 1233 450 154 0 0 chr4 85012591 85012669 -70617451 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1233 564 274 130 51 chr4 85012715 85013069 -70617051 - L1MB2 LINE L1 -4 6167 5786 1 1233 241 294 178 18 chr4 85013062 85013287 -70616833 - L1MB2 LINE L1 -2308 3832 3572 1 1233 968 116 17 6 chr4 85013675 85013848 -70616272 + (TTC)n Simple_repeat Simple_repeat 3 177 0 1 1233 357 79 8 88 chr4 85013850 85013975 -70616145 + CT-rich Low_complexity Low_complexity 3 117 0 1 1233 811 308 19 25 chr4 85014603 85015071 -70615049 - Lx7 LINE L1 -274 6023 5529 2 1233 258 279 169 0 chr4 85015116 85015252 -70614868 - L1M5 LINE L1 -505 5668 5510 2 1233 765 193 174 15 chr4 85015762 85015957 -70614163 - URR1A DNA MER1_type 0 226 1 2 1233 1927 38 0 21 chr4 85017790 85018033 -70612087 - L1Md_F2 LINE L1 0 6582 6345 2 1233 200 261 8 67 chr4 85018807 85018926 -70611194 + T-rich Low_complexity Low_complexity 5 116 0 2 1233 420 55 0 0 chr4 85019329 85019384 -70610736 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1233 207 0 0 0 chr4 85021618 85021641 -70608479 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1233 695 221 0 75 chr4 85023655 85023816 -70606304 - B1_Mur4 SINE Alu 0 150 2 2 1233 342 0 0 0 chr4 85024436 85024474 -70605646 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1233 974 342 47 37 chr4 85026082 85026571 -70603549 - MLT2B3 LTR ERVL -60 494 1 2 1233 380 325 115 15 chr4 85028126 85028326 -70601794 - Tigger5 DNA MER2_type -2181 225 6 3 1233 8840 124 41 8 chr4 85028796 85030576 -70599544 - Lx4A LINE L1 -2 7056 5204 3 1233 2409 112 60 3 chr4 85030576 85030943 -70599177 + Lx4A LINE L1 4808 5195 -682 3 1233 468 0 0 0 chr4 85031008 85031060 -70599060 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1233 23 0 0 0 chr4 85032662 85032685 -70597435 + AT_rich Low_complexity Low_complexity 1 23 0 3 1233 1436 158 82 14 chr4 85033134 85033416 -70596704 + RLTR20B1 LTR ERVK 262 562 -1 3 1233 1270 46 28 0 chr4 85034203 85034486 -70595634 + (TCTA)n Simple_repeat Simple_repeat 1 291 0 3 1233 647 258 153 51 chr4 85035638 85035912 -70594208 - Lx8 LINE L1 0 7473 7172 3 1233 322 105 70 0 chr4 85036111 85036197 -70593923 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 3 1233 1352 204 177 14 chr4 85036612 85036974 -70593146 + MTC LTR MaLR 1 421 0 3 1233 1707 176 95 17 chr4 85038367 85038714 -70591406 - ORR1D1 LTR MaLR 0 374 1 3 1233 4785 114 24 118 chr4 85039288 85040286 -70589834 + RMER17A2 LTR ERVK 3 906 0 4 1233 358 306 110 26 chr4 85041956 85042147 -70587973 - LTR84b LTR ERVL -240 521 315 4 1233 349 329 101 6 chr4 85042673 85042832 -70587288 + B4A SINE B4 25 198 -94 4 1233 774 248 122 0 chr4 85042834 85043048 -70587072 + MTD LTR MaLR 2 241 -178 4 1233 518 285 8 0 chr4 85043050 85043173 -70586947 + Lx8 LINE L1 6455 6578 -895 4 1233 619 220 59 13 chr4 85043187 85043339 -70586781 + MTD LTR MaLR 247 405 -14 4 1233 235 299 0 67 chr4 85043344 85043448 -70586672 + B4A SINE B4 196 292 0 4 1233 363 121 0 0 chr4 85043464 85043522 -70586598 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1233 1332 136 13 8 chr4 85043525 85043763 -70586357 - RLTR20B2 LTR ERVK -108 452 214 4 1233 1402 265 31 8 chr4 85043803 85044157 -70585963 - Lx8 LINE L1 -883 6590 6229 4 1233 517 351 88 13 chr4 85044606 85044923 -70585197 + Helitron3Na_Mam RC Helitron 142 482 -4 4 1233 3948 124 132 7 chr4 85045361 85046033 -70584087 + RMER6A LTR ERVK 1 756 0 4 1233 322 224 455 41 chr4 85047221 85047417 -70582703 - MTB_Mm LTR MaLR -130 277 1 5 1233 207 189 0 0 chr4 85047459 85047496 -70582624 + GA-rich Low_complexity Low_complexity 1 37 0 5 1233 405 335 95 48 chr4 85048341 85048657 -70581463 + MT2A LTR ERVL 98 428 -105 5 1233 244 269 227 0 chr4 85048700 85048819 -70581301 + MT2A LTR ERVL 388 533 0 5 1233 227 270 149 51 chr4 85049364 85049465 -70580655 - L2a LINE L2 -2 3424 3315 5 1233 351 0 0 0 chr4 85049465 85049504 -70580616 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1233 855 78 0 0 chr4 85049504 85049619 -70580501 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 1233 227 270 149 51 chr4 85049619 85049711 -70580409 - L2a LINE L2 -112 3314 3212 5 1233 278 313 20 115 chr4 85050241 85050389 -70579731 - ID_B1 SINE B4 -1 223 90 5 1233 186 43 0 0 chr4 85050702 85050725 -70579395 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1233 477 0 0 0 chr4 85051196 85051249 -70578871 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1233 459 0 0 0 chr4 85052636 85052687 -70577433 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1233 28634 36 0 7 chr4 85053277 85059536 -70570584 - L1Md_T LINE L1 0 6585 268 6 1233 252 0 0 0 chr4 85059868 85059896 -70570224 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1233 2100 231 44 25 chr4 85060156 85060246 -70569874 - RLTR20C LTR ERVK 0 534 446 6 1233 216 86 0 0 chr4 85060246 85060281 -70569839 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1233 714 44 0 0 chr4 85060281 85060370 -70569750 + (GA)n Simple_repeat Simple_repeat 2 91 0 6 1233 2100 231 44 25 chr4 85060370 85060802 -70569318 - RLTR20C LTR ERVK -89 445 3 6 1233 621 0 0 0 chr4 85061236 85061305 -70568815 + (CTGTG)n Simple_repeat Simple_repeat 3 71 0 6 1233 25 31 0 0 chr4 85061834 85061866 -70568254 + AT_rich Low_complexity Low_complexity 1 32 0 6 1233 243 0 0 0 chr4 85062045 85062072 -70568048 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1233 419 293 17 0 chr4 85062941 85063057 -70567063 + B4A SINE B4 43 160 -132 6 1233 8337 40 0 0 chr4 85063093 85064028 -70566092 + L1Md_T LINE L1 5635 6569 -13 6 1233 21 0 0 0 chr4 85064030 85064051 -70566069 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 189 74 0 0 chr4 85064215 85064242 -70565878 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1233 312 70 0 0 chr4 85064252 85064295 -70565825 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 7 1233 25 31 0 0 chr4 85064398 85064430 -70565690 + AT_rich Low_complexity Low_complexity 1 32 0 7 1233 429 20 0 0 chr4 85064569 85064619 -70565501 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1233 420 20 0 0 chr4 85064700 85064749 -70565371 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1233 1336 185 115 130 chr4 85064757 85065148 -70564972 - ORR1B1 LTR MaLR -9 385 1 7 154 1482 288 62 19 chr4 85065406 85066033 -70564087 - L1MDa LINE L1 -4432 2201 1548 7 1234 247 243 0 14 chr4 85066029 85066100 -70564020 - RMER1C Other Other 0 1342 1273 7 1234 186 43 0 0 chr4 85066110 85066133 -70563987 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1234 396 321 103 45 chr4 85066231 85066553 -70563567 + L1MD LINE L1 2921 3264 -2882 8 1234 769 301 74 4 chr4 85066553 85066823 -70563297 + B4A SINE B4 2 290 -2 8 1234 396 321 103 45 chr4 85066823 85066859 -70563261 + L1MD LINE L1 3265 3300 -2846 8 1234 562 346 78 18 chr4 85066906 85067188 -70562932 + Tigger9b DNA MER2_type 11 309 -315 8 1234 418 257 67 7 chr4 85067282 85067431 -70562689 + Tigger9b DNA MER2_type 460 617 -7 8 1234 670 230 185 0 chr4 85067475 85067653 -70562467 + Lx6 LINE L1 6656 6866 -594 8 1234 987 242 85 100 chr4 85067645 85068060 -70562060 + Lx7 LINE L1 7042 7454 -242 8 1234 445 53 26 26 chr4 85068060 85068137 -70561983 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 8 1234 987 177 197 41 chr4 85068137 85068282 -70561838 + Lx7 LINE L1 7455 7696 0 8 1234 230 229 14 0 chr4 85068489 85068559 -70561561 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1234 375 272 18 0 chr4 85068575 85068744 -70561376 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1234 486 0 0 0 chr4 85070556 85070610 -70559510 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 8 1234 262 277 0 0 chr4 85070611 85070694 -70559426 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 1234 28 29 0 0 chr4 85070710 85070745 -70559375 + AT_rich Low_complexity Low_complexity 1 35 0 8 1234 398 261 47 85 chr4 85070829 85071039 -70559081 - L1MC4 LINE L1 -167 7875 7639 9 1234 267 281 0 0 chr4 85071164 85071228 -70558892 - MTEb LTR MaLR -311 68 5 9 1234 267 351 37 32 chr4 85071545 85071697 -70558423 - MLT1J2 LTR MaLR -255 189 40 9 1234 261 0 0 0 chr4 85071997 85072026 -70558094 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1234 690 316 35 10 chr4 85074423 85074621 -70555499 - B4 SINE B4 -88 204 2 9 1234 268 316 157 49 chr4 85074647 85074933 -70555187 - L1M5 LINE L1 -527 5635 5319 9 1234 276 357 41 0 chr4 85074935 85075033 -70555087 + PB1D10 SINE Alu 7 108 -9 9 1234 251 317 159 12 chr4 85075099 85075262 -70554858 - L1M5 LINE L1 -921 5225 5039 9 1234 670 218 23 0 chr4 85075878 85076011 -70554109 - Lx7 LINE L1 -756 6940 6805 9 1234 1662 163 80 17 chr4 85076023 85076322 -70553798 + MTC LTR MaLR 104 421 0 9 1234 255 306 0 77 chr4 85076348 85076441 -70553679 + RSINE1 SINE B4 2 86 -206 9 1234 1578 216 201 13 chr4 85076443 85076841 -70553279 + Lx9 LINE L1 6447 6919 -725 1 1234 183 80 0 0 chr4 85076898 85076923 -70553197 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1234 352 324 114 27 chr4 85077112 85077331 -70552789 + ORR1E LTR MaLR 4 241 -118 1 1234 655 286 90 69 chr4 85077488 85077825 -70552295 + L1M4 LINE L1 3634 3990 -2156 1 1234 1211 57 0 21 chr4 85077825 85077969 -70552151 + B1_Mus1 SINE Alu 2 142 -6 1 1234 969 110 0 0 chr4 85077973 85078118 -70552002 + (GAAA)n Simple_repeat Simple_repeat 3 147 0 1 1234 655 286 90 69 chr4 85078118 85078210 -70551910 + L1M4 LINE L1 3991 4077 -2069 1 1234 224 316 13 0 chr4 85078487 85078563 -70551557 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1234 224 298 65 37 chr4 85079781 85079889 -70550231 - L3 LINE CR1 -409 4080 3970 1 1234 203 175 0 0 chr4 85080222 85080262 -70549858 + A-rich Low_complexity Low_complexity 2 41 0 1 1234 640 125 50 0 chr4 85081383 85081503 -70548617 + Lx5 LINE L1 6925 7050 0 1 1234 488 243 27 41 chr4 85083567 85083713 -70546407 - MER57E1 LTR ERV1 0 372 229 1 1234 202 321 133 24 chr4 85084162 85084295 -70545825 + L2b LINE L2 3246 3426 0 1 1234 260 236 62 62 chr4 85084831 85084944 -70545176 + L2c LINE L2 3184 3296 -91 1 1234 313 310 14 72 chr4 85085401 85085540 -70544580 - LFSINE_Vert SINE SINE -165 294 164 1 1234 733 314 132 11 chr4 85086912 85087276 -70542844 - MLT1A1 LTR MaLR 0 408 1 1 1234 225 47 22 44 chr4 85087281 85087326 -70542794 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1234 3143 190 248 11 chr4 85087727 85087933 -70542187 + L1_Mus4 LINE L1 4854 5192 -688 1 1234 3681 96 10 0 chr4 85087933 85088414 -70541706 + L1_Mus3 LINE L1 6147 6632 -6 1 1234 7015 104 43 6 chr4 85088414 85089762 -70540358 + L1_Mus4 LINE L1 5193 6636 0 1 1234 4504 234 81 59 chr4 85089758 85091185 -70538935 + Lx7 LINE L1 5781 7238 -458 1 1234 553 61 0 0 chr4 85091198 85091264 -70538856 - L1_Mus1 LINE L1 -135 6432 6367 1 1234 1176 187 90 22 chr4 85091273 85091541 -70538579 + Lx7 LINE L1 7411 7696 0 1 1234 203 88 0 29 chr4 85092527 85092562 -70537558 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1234 281 317 159 51 chr4 85093358 85093534 -70536586 + ORR1E LTR MaLR 60 254 -105 1 1234 501 236 80 20 chr4 85094179 85094394 -70535726 - MLT1A1 LTR MaLR -23 367 119 1 1234 192 77 0 0 chr4 85094445 85094471 -70535649 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1234 279 209 18 45 chr4 85094906 85095016 -70535104 - HAL1b LINE L1 -164 1845 1739 1 1234 463 307 14 0 chr4 85095093 85095233 -70534887 - B1F SINE Alu 0 149 8 1 1234 227 317 84 53 chr4 85095241 85095431 -70534689 - HAL1b LINE L1 -326 1683 1488 1 1234 333 0 0 0 chr4 85095544 85095581 -70534539 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1234 441 0 0 0 chr4 85095581 85095629 -70534491 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1234 385 314 182 12 chr4 85095895 85096153 -70533967 - HAL1b LINE L1 -578 1431 1130 1 1234 309 293 0 13 chr4 85096179 85096255 -70533865 + ID4 SINE ID 2 76 -7 1 1234 207 0 0 0 chr4 85096304 85096327 -70533793 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1234 387 0 0 0 chr4 85096327 85096370 -70533750 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 1 1234 447 380 96 54 chr4 85096374 85096688 -70533432 - RMER13A LTR ERVK -1 859 533 1 1234 1253 230 97 47 chr4 85096728 85097130 -70532990 - RMER13A LTR ERVK -437 423 2 1 1234 324 158 0 0 chr4 85097142 85097199 -70532921 + (CCA)n Simple_repeat Simple_repeat 3 59 0 1 1234 3921 197 21 14 chr4 85097830 85098858 -70531262 + L1_Mur3 LINE L1 986 2023 -3854 1 1234 1450 155 94 8 chr4 85098858 85099125 -70530995 + Lx5 LINE L1 6754 7043 -7 1 1234 339 306 109 12 chr4 85099220 85099478 -70530642 - L1MB2 LINE L1 -7 6173 5882 1 1234 441 0 0 0 chr4 85099936 85099985 -70530135 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1234 271 200 0 35 chr4 85100024 85100081 -70530039 - B1_Mur4 SINE Alu 0 150 96 1 1234 267 291 108 36 chr4 85100117 85100256 -70529864 - L1MB2 LINE L1 -572 5608 5460 1 1234 375 23 0 0 chr4 85100387 85100431 -70529689 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1234 306 0 0 0 chr4 85100455 85100489 -70529631 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1234 1006 153 58 0 chr4 85100564 85100753 -70529367 - ORR1C1 LTR MaLR -51 327 128 1 1234 300 53 0 0 chr4 85100871 85100909 -70529211 + (CCCCCT)n Simple_repeat Simple_repeat 2 39 0 1 1234 1101 74 0 0 chr4 85100909 85101057 -70529063 + (TTC)n Simple_repeat Simple_repeat 2 149 0 1 1234 509 259 63 28 chr4 85101969 85102112 -70528008 - RSINE1 SINE B4 -10 155 8 1 1234 354 137 49 0 chr4 85103317 85103419 -70526701 + (TCTCTG)n Simple_repeat Simple_repeat 6 112 0 1 1234 360 341 47 53 chr4 85103422 85103777 -70526343 + MTEb LTR MaLR 1 356 -23 1 1234 229 298 47 12 chr4 85104018 85104103 -70526017 - MIRb SINE MIR -64 204 117 1 1234 247 321 55 55 chr4 85105212 85105357 -70524763 - B1F2 SINE Alu -4 145 1 1 1234 189 0 0 0 chr4 85105614 85105635 -70524485 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 1 1234 1746 218 5 50 chr4 85105787 85106001 -70524119 - MTD LTR MaLR -28 391 196 1 1234 4115 26 15 11 chr4 85106001 85106476 -70523644 - L1Md_F3 LINE L1 -12 6572 6096 1 1234 1746 218 5 50 chr4 85106476 85106658 -70523462 - MTD LTR MaLR -224 195 13 1 1234 262 143 20 0 chr4 85106667 85106716 -70523404 + RMER1B Other Other 1015 1064 -2 1 1234 264 263 0 0 chr4 85107415 85107472 -70522648 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1234 423 254 0 0 chr4 85108398 85108536 -70521584 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 1234 1320 262 30 98 chr4 85109687 85109896 -70520224 - MTD LTR MaLR -12 407 198 1 1234 243 0 0 0 chr4 85109896 85109923 -70520197 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1234 1320 262 30 98 chr4 85109923 85110121 -70519999 - MTD LTR MaLR -222 197 27 1 1234 378 0 0 0 chr4 85110121 85110163 -70519957 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1234 1320 262 30 98 chr4 85110163 85110181 -70519939 - MTD LTR MaLR -393 26 10 1 1234 559 180 18 30 chr4 85112532 85112698 -70517422 + (TATG)n Simple_repeat Simple_repeat 3 166 0 1 1234 342 0 0 0 chr4 85113038 85113076 -70517044 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1234 1611 304 37 55 chr4 85113464 85114027 -70516093 - Lx5 LINE L1 -18 7032 6480 1 1234 1416 118 61 9 chr4 85115810 85116023 -70514097 + URR1B DNA MER1_type 2 225 0 1 1234 686 303 78 69 chr4 85116068 85116415 -70513705 + ORR1E LTR MaLR 1 350 -9 1 1234 351 303 99 118 chr4 85116692 85117473 -70512647 - L1MEc LINE L1 -4000 2400 1635 1 1234 219 97 0 0 chr4 85118027 85118058 -70512062 - B3 SINE B2 -184 32 2 1 1234 735 296 110 24 chr4 85118680 85119016 -70511104 + MLT1D LTR MaLR 141 505 0 1 1234 6006 6 0 0 chr4 85119024 85119697 -70510423 - L1_Mm LINE L1 -2036 3847 3175 1 1234 5544 7 0 2 chr4 85119686 85120305 -70509815 + L1Md_A LINE L1 4969 5586 -297 1 1234 9658 1 0 0 chr4 85120305 85121301 -70508819 + L1Md_A LINE L1 5587 6582 0 1 1234 684 89 0 0 chr4 85121544 85121645 -70508475 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1234 246 95 0 0 chr4 85123124 85123166 -70506954 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1234 42183 5 0 0 chr4 85123169 85129543 -70500577 - L1Md_A LINE L1 0 6582 208 1 1234 277 325 185 19 chr4 85129543 85129700 -70500420 - MIR SINE MIR -75 187 5 1 1234 294 252 78 29 chr4 85130183 85130285 -70499835 + ORSL DNA Tip100 5 111 -164 1 1234 512 289 52 0 chr4 85133295 85133430 -70496690 + ID_B1 SINE B4 83 224 0 1 1234 31 26 0 0 chr4 85134165 85134203 -70495917 + AT_rich Low_complexity Low_complexity 1 38 0 1 1234 650 299 42 57 chr4 85134248 85134602 -70495518 - L1MB7 LINE L1 -22 6162 5814 1 1234 216 305 48 12 chr4 85134617 85134700 -70495420 - PB1D7 SINE Alu -29 91 6 1 1234 613 285 49 49 chr4 85134703 85134928 -70495192 - L1MB7 LINE L1 -2167 5828 5604 1 1234 338 309 32 39 chr4 85134911 85135066 -70495054 + L1MB7 LINE L1 5897 6050 -134 1 1234 255 278 103 26 chr4 85135089 85135244 -70494876 - L1MB7 LINE L1 -649 5591 5425 1 1234 536 304 14 28 chr4 85135275 85135479 -70494641 + MLT1A1 LTR MaLR 156 403 -5 1 1234 426 266 30 53 chr4 85135484 85135615 -70494505 + MLT1B LTR MaLR 243 378 -12 1 1234 22 0 0 0 chr4 85136008 85136030 -70494090 + AT_rich Low_complexity Low_complexity 1 22 0 1 1234 397 263 9 78 chr4 85136030 85136060 -70494060 - L1M5 LINE L1 -665 5497 5476 1 1234 5572 120 14 63 chr4 85136060 85136932 -70493188 - Lx3C LINE L1 -3 6973 6145 1 1234 8220 133 34 4 chr4 85136940 85138152 -70491968 - Lx4A LINE L1 -1 7057 5810 1 1234 6696 112 20 40 chr4 85138152 85139279 -70490841 - Lx4A LINE L1 -447 5430 4326 1 1234 185 241 0 0 chr4 85139403 85139432 -70490688 + MIR SINE MIR 35 63 -199 1 1234 239 299 15 0 chr4 85139505 85139572 -70490548 + MIR SINE MIR 161 228 -34 1 1234 1981 182 95 80 chr4 85139575 85140111 -70490009 + RMER4B LTR ERVK 42 585 0 1 1234 30 0 0 0 chr4 85140198 85140228 -70489892 + AT_rich Low_complexity Low_complexity 1 30 0 1 1234 330 299 41 0 chr4 85140291 85140388 -70489732 + MLT1E1A LTR MaLR 2 102 -578 1 1234 1464 275 65 27 chr4 85140419 85140893 -70489227 + MLT1E1A LTR MaLR 182 673 -7 1 1234 434 289 46 26 chr4 85141315 85141468 -70488652 - MLT1A1 LTR MaLR -4 404 249 1 1234 253 317 24 35 chr4 85141505 85141675 -70488445 + GA-rich Low_complexity Low_complexity 1 168 0 1 1234 1261 75 0 0 chr4 85141713 85141860 -70488260 + B1_Mm SINE Alu 1 147 0 1 1234 222 37 0 0 chr4 85141860 85141887 -70488233 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1234 223 370 84 24 chr4 85142143 85142356 -70487764 + L2c LINE L2 3137 3362 -25 1 1234 23 68 0 0 chr4 85143344 85143388 -70486732 + AT_rich Low_complexity Low_complexity 1 44 0 1 1234 1939 166 62 0 chr4 85143639 85143995 -70486125 - Lx5 LINE L1 -540 5337 4960 1 1234 6913 172 26 12 chr4 85144008 85145091 -70485029 + Lx5 LINE L1 5339 6434 -616 1 1234 302 67 22 0 chr4 85145091 85145136 -70484984 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1234 6913 204 39 13 chr4 85145136 85145509 -70484611 + Lx5 LINE L1 6435 6821 -229 1 1234 234 0 0 0 chr4 85145509 85145535 -70484585 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 1 1234 6913 204 39 13 chr4 85145535 85145741 -70484379 + Lx5 LINE L1 6822 7047 -3 1 1234 1024 282 45 102 chr4 85147135 85147537 -70482583 + MTE2a LTR MaLR 1 379 0 1 1234 414 0 0 0 chr4 85148132 85148178 -70481942 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1234 345 100 0 0 chr4 85148831 85148881 -70481239 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1234 381 22 0 0 chr4 85150166 85150212 -70479908 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1234 680 198 16 36 chr4 85151430 85151624 -70478496 - Lx9 LINE L1 -83 7561 7372 1 1234 211 246 88 0 chr4 85151841 85151898 -70478222 + L4 LINE RTE 1965 2026 -3 2 1234 216 0 0 0 chr4 85152571 85152595 -70477525 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1234 194 271 0 78 chr4 85153088 85153152 -70476968 - L2a LINE L2 -9 3417 3359 2 1234 182 303 39 13 chr4 85154724 85154801 -70475319 - L2a LINE L2 -1296 2123 2045 2 1234 22 0 0 0 chr4 85154827 85154849 -70475271 + AT_rich Low_complexity Low_complexity 1 22 0 2 1234 1142 96 0 14 chr4 85154929 85155077 -70475043 - B1_Mus2 SINE Alu 0 147 2 2 1234 204 279 201 39 chr4 85155703 85155882 -70474238 - L2a LINE L2 -1295 2124 1917 2 1234 516 72 0 0 chr4 85156194 85156263 -70473857 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1234 420 279 117 31 chr4 85156708 85157052 -70473068 - RMER20B LTR ERVK -46 470 87 2 1234 1347 64 3 0 chr4 85157064 85157378 -70472742 + (CA)n Simple_repeat Simple_repeat 1 315 0 2 1234 206 173 19 19 chr4 85158741 85158794 -70471326 + (TGGG)n Simple_repeat Simple_repeat 4 56 0 2 1234 1430 91 5 5 chr4 85163190 85163378 -70466742 - B2_Mm2 SINE B2 -6 189 2 2 1234 240 328 115 59 chr4 85163550 85163890 -70466230 - L1ME2 LINE L1 -2 6162 5804 2 1234 306 267 113 9 chr4 85164116 85164222 -70465898 + Tigger7 DNA MER2_type 1 117 -2374 2 1234 268 291 21 95 chr4 85164288 85164383 -70465737 + Tigger7 DNA MER2_type 2403 2490 -1 2 1234 401 267 144 19 chr4 85164404 85164584 -70465536 - L1ME2 LINE L1 -758 5539 5347 2 1234 382 243 51 13 chr4 85164727 85164912 -70465208 - L1ME2 LINE L1 -786 5360 5172 2 1234 1172 282 44 29 chr4 85164932 85165272 -70464848 - MTEa LTR MaLR -16 363 19 2 1234 246 334 94 35 chr4 85165285 85165626 -70464494 - L1ME2 LINE L1 -985 5161 4801 2 1234 312 230 0 67 chr4 85165652 85165750 -70464370 - ID4 SINE ID -43 109 26 2 1234 373 269 110 23 chr4 85165805 85166052 -70464068 - L1ME2 LINE L1 -1450 4696 4422 2 1234 180 152 0 0 chr4 85166057 85166090 -70464030 + CT-rich Low_complexity Low_complexity 3 35 0 2 1234 345 47 0 0 chr4 85166131 85166174 -70463946 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1234 433 330 111 53 chr4 85166185 85166558 -70463562 - MLT2B2 LTR ERVL -247 470 88 2 1234 730 239 125 0 chr4 85166604 85166780 -70463340 + B3 SINE B2 1 198 -18 2 1234 35 54 0 0 chr4 85166869 85166925 -70463195 + AT_rich Low_complexity Low_complexity 1 56 0 2 1234 942 281 141 30 chr4 85166925 85167338 -70462782 - L1ME2 LINE L1 -2469 3677 3212 2 1234 642 254 73 31 chr4 85167338 85167529 -70462591 - B3 SINE B2 -17 199 1 2 1234 700 281 141 30 chr4 85167529 85168010 -70462110 - L1ME2 LINE L1 -2935 3211 2685 2 1234 24 32 0 0 chr4 85168662 85168693 -70461427 + AT_rich Low_complexity Low_complexity 1 31 0 2 1234 1487 218 82 8 chr4 85168710 85169062 -70461058 - ORR1C1 LTR MaLR 0 378 1 2 1234 337 282 31 10 chr4 85169128 85169279 -70460841 - L1MB5 LINE L1 -254 5930 5782 2 1234 2477 91 28 3 chr4 85169279 85169632 -70460488 - Lx3_Mus LINE L1 -19 6990 6629 2 1234 335 320 98 26 chr4 85169632 85169908 -70460212 - L1MB5 LINE L1 -2214 5781 5456 2 1234 264 370 12 0 chr4 85169791 85169953 -70460167 - L1M3 LINE L1 -597 5574 5411 2 1234 369 0 0 0 chr4 85170042 85170083 -70460037 + (CCCTG)n Simple_repeat Simple_repeat 3 43 0 2 1234 237 65 0 0 chr4 85170174 85170205 -70459915 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1234 505 341 27 9 chr4 85170529 85170748 -70459372 - MER58A DNA MER1_type 0 224 2 2 1234 239 260 39 13 chr4 85171282 85171360 -70458760 - HAL1 LINE L1 -2427 80 1 2 1234 516 32 0 0 chr4 85171527 85171589 -70458531 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1234 968 139 158 10 chr4 85172236 85172432 -70457688 - URR1B DNA MER1_type 0 225 1 2 1234 369 305 41 112 chr4 85172581 85172751 -70457369 - RSINE1 SINE B4 0 165 8 2 1234 327 49 0 0 chr4 85172989 85173030 -70457090 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1234 625 88 10 10 chr4 85174559 85174662 -70455458 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 2 1234 261 0 0 0 chr4 85175182 85175211 -70454909 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 1234 592 270 113 68 chr4 85176065 85176446 -70453674 - L1MB2 LINE L1 -43 6128 5731 2 1234 21 0 0 0 chr4 85176563 85176584 -70453536 + AT_rich Low_complexity Low_complexity 1 21 0 2 1234 1951 192 35 58 chr4 85177176 85177607 -70452513 - MTC LTR MaLR 0 421 1 2 1234 326 310 8 25 chr4 85177686 85177805 -70452315 - PB1D10 SINE Alu 0 117 1 2 1234 711 216 7 0 chr4 85178356 85178495 -70451625 + ORR1C2 LTR MaLR 245 384 0 2 1234 902 0 34 0 chr4 85179024 85179142 -70450978 + (CATA)n Simple_repeat Simple_repeat 2 123 0 2 1234 688 173 428 20 chr4 85180780 85180981 -70449139 - ORR1C2 LTR MaLR 0 384 102 2 1234 3272 168 123 86 chr4 85181454 85182214 -70447906 + RLTR25B LTR ERVK 1 836 -192 2 1234 324 0 0 0 chr4 85182214 85182250 -70447870 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1234 3272 168 123 86 chr4 85182250 85182383 -70447737 + RLTR25B LTR ERVK 837 927 -101 2 1234 256 227 45 0 chr4 85182515 85182581 -70447539 + PB1D10 SINE Alu 43 111 -6 2 1234 294 245 57 75 chr4 85182632 85182738 -70447382 - MLT1D LTR MaLR -118 387 284 2 1234 291 292 411 20 chr4 85183147 85183558 -70446562 + L2 LINE L2 2500 3070 -349 2 1234 184 270 47 16 chr4 85184041 85184105 -70446015 + MIR3 SINE MIR 130 195 -13 2 1234 300 181 0 12 chr4 85184780 85184864 -70445256 - Lx9 LINE L1 -42 7602 7520 2 1234 21 57 0 0 chr4 85185198 85185233 -70444887 + AT_rich Low_complexity Low_complexity 1 35 0 2 1234 364 287 47 122 chr4 85185488 85185702 -70444418 - MER121 Unknown Unknown -214 198 1 2 1234 180 0 0 0 chr4 85186342 85186362 -70443758 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 2 1234 932 161 0 11 chr4 85186362 85186544 -70443576 + CT-rich Low_complexity Low_complexity 1 180 0 2 1234 249 33 0 0 chr4 85186545 85186575 -70443545 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2 1234 511 165 18 0 chr4 85186698 85186807 -70443313 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 1234 5573 60 4 0 chr4 85187233 85187929 -70442191 - L1_Mus2 LINE L1 -2 6564 5866 2 1234 223 296 0 0 chr4 85188004 85188048 -70442072 + PB1 SINE Alu 1 44 -83 2 1234 308 191 233 67 chr4 85188200 85188290 -70441830 - B1_Mus2 SINE Alu 0 147 43 2 1234 591 198 58 53 chr4 85189122 85189311 -70440809 - B3A SINE B2 -2 193 11 2 1234 540 306 91 29 chr4 85189864 85190178 -70439942 - MLT1A0 LTR MaLR 0 365 4 2 1234 981 141 35 6 chr4 85190494 85190665 -70439455 + ORR1B1 LTR MaLR 1 176 -218 2 1234 444 187 11 0 chr4 85190665 85190756 -70439364 + Lx9 LINE L1 7072 7163 -481 2 1234 1081 294 27 26 chr4 85190765 85191245 -70438875 - MERVL_2A-int LTR ERVL -4440 1274 775 2 1234 1072 340 77 26 chr4 85191290 85191785 -70438335 - MT2A LTR ERVL -13 520 1 2 1234 1448 249 43 0 chr4 85191847 85192197 -70437923 - Lx8 LINE L1 -767 6706 6342 2 1234 403 333 35 0 chr4 85192213 85192384 -70437736 + Lx8 LINE L1 6936 7112 -361 2 1234 25 83 0 0 chr4 85192505 85192565 -70437555 + AT_rich Low_complexity Low_complexity 1 60 0 2 1234 237 318 35 0 chr4 85192896 85192981 -70437139 - LTR33 LTR ERVL -47 468 381 2 1234 239 255 0 0 chr4 85193209 85193260 -70436860 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1234 817 274 21 0 chr4 85194150 85194340 -70435780 - ID_B1 SINE B4 -19 205 12 2 1234 292 234 0 59 chr4 85194280 85194348 -70435772 - BC1_Mm scRNA scRNA -82 70 7 2 1234 2781 147 17 0 chr4 85194916 85195387 -70434733 - L1_Mus4 LINE L1 -292 5591 5113 2 1234 6660 87 44 3 chr4 85195384 85196363 -70433757 + L1_Mus4 LINE L1 5607 6625 -11 2 1234 260 111 0 22 chr4 85196363 85196409 -70433711 + (TAA)n Simple_repeat Simple_repeat 1 45 0 2 1234 240 35 0 0 chr4 85196407 85196436 -70433684 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2 1235 783 346 49 28 chr4 85197651 85197936 -70432184 - B4A SINE B4 0 292 2 2 1235 9914 94 3 1 chr4 85197936 85199414 -70430706 + L1_Mm LINE L1 3644 5123 -760 2 1235 911 50 8 0 chr4 85199414 85199534 -70430586 + B1_Mm SINE Alu 27 147 0 2 1235 1044 97 0 0 chr4 85199534 85199688 -70430432 + L1_Mm LINE L1 5293 5446 -437 2 1235 275 49 24 0 chr4 85199949 85199990 -70430130 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2 1235 386 320 146 31 chr4 85200261 85200487 -70429633 + MLT1C LTR MaLR 185 436 -31 2 1235 31 44 0 0 chr4 85202428 85202473 -70427647 + AT_rich Low_complexity Low_complexity 1 45 0 2 1235 2270 215 78 19 chr4 85202575 85203148 -70426972 + Lx5 LINE L1 6431 7037 -13 2 1235 4285 50 9 6 chr4 85203367 85203913 -70426207 + L1Md_F2 LINE L1 6023 6570 -12 2 1235 534 130 0 0 chr4 85206654 85206762 -70423358 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 1235 22 0 0 0 chr4 85206776 85206798 -70423322 + AT_rich Low_complexity Low_complexity 1 22 0 2 1235 317 287 35 4 chr4 85206865 85207034 -70423086 + L1MD1 LINE L1 5920 6092 -267 2 1235 920 255 19 5 chr4 85207469 85207678 -70422442 + B3 SINE B2 2 213 -3 2 1235 234 232 43 14 chr4 85211522 85211592 -70418528 + Lx9 LINE L1 6672 6743 -901 2 1235 211 184 0 0 chr4 85211833 85211871 -70418249 + (CCA)n Simple_repeat Simple_repeat 3 40 0 2 1235 1662 235 52 32 chr4 85212880 85213315 -70416805 + Lx7 LINE L1 6918 7359 -337 2 1235 669 25 0 0 chr4 85213315 85213394 -70416726 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1235 1662 235 52 32 chr4 85213394 85213454 -70416666 + Lx7 LINE L1 7360 7423 -273 2 1235 4449 68 15 8 chr4 85213492 85214083 -70416037 - L1Md_F2 LINE L1 0 6582 5988 2 1235 9425 124 34 11 chr4 85214087 85216582 -70413538 - L1Md_F LINE L1 -3330 2553 31 2 1235 680 194 159 14 chr4 85216591 85216811 -70413309 + Lx7 LINE L1 7445 7696 0 2 1235 207 267 0 0 chr4 85217131 85217176 -70412944 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1235 589 269 13 52 chr4 85217284 85217437 -70412683 + RSINE1 SINE B4 2 148 -17 2 1235 27 0 0 0 chr4 85217437 85217464 -70412656 + AT_rich Low_complexity Low_complexity 1 27 0 2 1235 394 264 48 6 chr4 85220691 85220859 -70409261 - L1MA9 LINE L1 -8 6540 6366 2 1235 1656 229 74 6 chr4 85220859 85221211 -70408909 - MTC LTR MaLR -35 386 11 2 1235 246 276 37 19 chr4 85221245 85221352 -70408768 - L1MA9 LINE L1 -389 6138 6030 2 1235 390 94 0 0 chr4 85221471 85221535 -70408585 + (TCTG)n Simple_repeat Simple_repeat 2 65 0 2 1235 330 265 0 10 chr4 85221544 85221643 -70408477 + CT-rich Low_complexity Low_complexity 2 99 0 2 1235 489 273 52 22 chr4 85221713 85222010 -70408110 - L1MA9 LINE L1 -562 5845 5538 2 1235 235 281 18 0 chr4 85222035 85222092 -70408028 - B4A SINE B4 -194 98 41 3 1235 433 326 39 90 chr4 85222146 85222402 -70407718 - MLT1A0 LTR MaLR 0 365 123 3 1235 1390 295 46 46 chr4 85222471 85222698 -70407422 - L1MA9 LINE L1 -883 5493 5263 2 1235 792 73 0 46 chr4 85222698 85222828 -70407292 - L1Md_F2 LINE L1 0 6582 6459 3 1235 1390 295 46 46 chr4 85222828 85223298 -70406822 - L1MA9 LINE L1 -1114 5262 4796 2 1235 1534 214 152 75 chr4 85223298 85223792 -70406328 + MT2A LTR ERVL 1 532 -1 3 1235 1390 295 46 46 chr4 85223792 85223948 -70406172 - L1MA9 LINE L1 -1581 4795 4639 2 1235 366 269 99 16 chr4 85223961 85224082 -70406038 - B1F SINE Alu -9 140 10 3 1235 329 361 40 33 chr4 85224082 85224113 -70406007 - ID_B1 SINE B4 -9 215 63 3 1235 453 301 141 7 chr4 85224236 85224540 -70405580 - L1MA9 LINE L1 -1918 4458 4114 2 1235 234 104 21 0 chr4 85224565 85224613 -70405507 - Lx9 LINE L1 -3 7641 7593 3 1235 740 290 36 7 chr4 85224627 85224908 -70405212 - L1MA9 LINE L1 -2256 4120 3832 2 1235 1187 289 116 31 chr4 85225329 85226520 -70403600 - L1MA9 LINE L1 -2601 3775 2484 2 1235 426 69 0 0 chr4 85226549 85226607 -70403513 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1235 566 264 16 8 chr4 85226612 85226738 -70403382 + RSINE1 SINE B4 14 140 -25 3 1235 317 325 69 20 chr4 85226809 85227054 -70403066 - L1MA9 LINE L1 -3995 2389 2133 2 1235 228 301 48 0 chr4 85227278 85227381 -70402739 - L1MA9 LINE L1 -4606 1778 1671 2 1235 432 82 0 0 chr4 85227386 85227447 -70402673 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 3 1235 329 274 126 0 chr4 85227456 85227551 -70402569 - PB1 SINE Alu -20 107 1 3 1235 536 329 120 31 chr4 85227709 85228101 -70402019 + MT2A LTR ERVL 1 427 -106 3 1235 421 281 130 42 chr4 85228163 85228876 -70401244 - L1M3c LINE L1 -4445 2404 1638 3 1235 2182 267 48 24 chr4 85230210 85230973 -70399147 - Lx8 LINE L1 -10 7463 6682 3 1235 313 111 93 0 chr4 85230972 85231026 -70399094 - Lx8 LINE L1 -1055 6418 6360 3 1235 975 162 0 0 chr4 85231738 85231892 -70398228 - URR1B DNA MER1_type -71 154 1 3 1235 292 118 29 0 chr4 85235598 85235666 -70394454 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 3 1235 661 292 64 32 chr4 85235667 85235918 -70394202 - MER44A DNA MER2_type -79 260 2 3 1235 600 282 43 47 chr4 85236161 85236462 -70393658 + L1M2 LINE L1 5494 5793 -498 3 1235 441 122 0 0 chr4 85236474 85236548 -70393572 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1235 288 77 0 0 chr4 85236548 85236587 -70393533 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1235 234 260 77 0 chr4 85236587 85236691 -70393429 + L1M2 LINE L1 5819 5930 -373 3 1235 248 203 0 104 chr4 85236732 85236809 -70393311 + RLTR22_Mur LTR ERVK 1306 1374 -474 3 1235 580 249 126 28 chr4 85239375 85239557 -70390563 + B3 SINE B2 1 200 -16 3 1235 495 48 0 0 chr4 85239557 85239619 -70390501 + (AAATG)n Simple_repeat Simple_repeat 2 63 0 3 1235 203 61 0 29 chr4 85240074 85240108 -70390012 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1235 233 289 13 13 chr4 85240236 85240313 -70389807 - MLT1A1 LTR MaLR -295 113 37 3 1235 189 0 0 0 chr4 85240974 85240995 -70389125 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1235 186 43 0 0 chr4 85241733 85241756 -70388364 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 3 1235 7714 48 1 0 chr4 85241951 85243516 -70386604 - L1Md_F2 LINE L1 -14 6568 5003 3 1235 200 359 103 0 chr4 85244451 85244568 -70385552 + MIRc SINE MIR 9 137 -131 3 1235 396 0 0 0 chr4 85244758 85244802 -70385318 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1235 234 105 0 0 chr4 85244870 85244908 -70385212 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1235 1200 311 55 90 chr4 85244918 85245386 -70384734 - Lx9 LINE L1 -213 7431 6995 3 1235 453 234 165 38 chr4 85245386 85245519 -70384601 + B1_Mur4 SINE Alu 1 150 0 3 1235 1200 311 55 90 chr4 85245519 85245908 -70384212 - Lx9 LINE L1 -650 6994 6604 3 1235 208 324 133 63 chr4 85246940 85247098 -70383022 + MIRb SINE MIR 100 268 0 3 1235 594 189 12 6 chr4 85247377 85247537 -70382583 + Lx2B LINE L1 6839 6999 -1 3 1235 349 331 68 68 chr4 85247627 85247643 -70382477 - RSINE1 SINE B4 0 165 150 3 1235 306 0 0 0 chr4 85247643 85247677 -70382443 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1235 349 331 68 68 chr4 85247677 85247822 -70382298 - RSINE1 SINE B4 -16 149 4 3 1235 198 0 0 0 chr4 85247844 85247866 -70382254 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 3 1235 23 0 0 29 chr4 85247868 85247885 -70382235 + AT_rich Low_complexity Low_complexity 1 17 0 3 1235 4667 44 0 5 chr4 85247885 85248451 -70381669 + L1Md_F2 LINE L1 6009 6571 -11 3 1235 23 0 0 29 chr4 85248451 85248467 -70381653 + AT_rich Low_complexity Low_complexity 1 16 0 3 1235 1136 68 14 7 chr4 85248467 85248614 -70381506 - B1_Mus1 SINE Alu 0 148 1 3 1235 306 0 0 0 chr4 85248678 85248712 -70381408 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1235 609 254 30 0 chr4 85250473 85250607 -70379513 + ORR1D1 LTR MaLR 233 370 -4 3 1235 522 114 0 0 chr4 85250839 85250918 -70379202 + (A)n Simple_repeat Simple_repeat 1 79 0 3 1235 294 74 354 12 chr4 85251270 85251352 -70378768 - Lx3A LINE L1 -2 6979 6870 3 1235 2762 83 39 0 chr4 85251353 85251785 -70378335 + Lx3_Mus LINE L1 5474 5918 -1091 3 1235 690 125 0 0 chr4 85251785 85251897 -70378223 + (GAA)n Simple_repeat Simple_repeat 1 112 0 3 1235 1326 87 11 60 chr4 85251901 85252170 -70377950 + Lx3_Mus LINE L1 5926 6181 -828 3 1235 1138 138 4 2 chr4 85252644 85252825 -70377295 - ORR1B1 LTR MaLR -51 343 142 3 1235 270 317 13 8 chr4 85253448 85253538 -70376582 + MIR SINE MIR 127 218 -50 3 1235 205 321 0 26 chr4 85254061 85254176 -70375944 + (TCTG)n Simple_repeat Simple_repeat 2 113 0 3 1235 21 0 0 0 chr4 85254583 85254604 -70375516 + AT_rich Low_complexity Low_complexity 1 21 0 3 1235 375 23 0 0 chr4 85254664 85254708 -70375412 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1235 339 25 0 0 chr4 85254921 85254961 -70375159 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1235 212 320 66 28 chr4 85255665 85255771 -70374349 - L2c LINE L2 -9 3378 3269 3 1235 2142 145 60 0 chr4 85255807 85256173 -70373947 + ORR1B1 LTR MaLR 1 388 -6 3 1235 4712 52 17 15 chr4 85256862 85257463 -70372657 - L1Md_F2 LINE L1 -1 6581 5980 3 1235 206 303 69 29 chr4 85257756 85257858 -70372262 - MIR3 SINE MIR -15 193 88 3 1235 656 276 5 16 chr4 85258403 85258587 -70371533 - Lx9 LINE L1 -374 7270 7089 3 1235 568 195 138 72 chr4 85258601 85258877 -70371243 + Lx9 LINE L1 7306 7599 -45 3 1235 180 295 66 0 chr4 85260825 85260886 -70369234 + L2a LINE L2 3347 3411 -15 3 1235 420 336 33 33 chr4 85261024 85261298 -70368822 + B4A SINE B4 3 276 -16 3 1235 450 0 0 0 chr4 85262058 85262108 -70368012 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1235 618 282 32 109 chr4 85262789 85263100 -70367020 + B4A SINE B4 2 288 -4 3 1235 7478 37 2 0 chr4 85263634 85264571 -70365549 - L1Md_A LINE L1 -1 6581 5643 3 1235 21 0 0 0 chr4 85265017 85265038 -70365082 + AT_rich Low_complexity Low_complexity 1 21 0 3 1235 655 12 24 0 chr4 85266193 85266277 -70363843 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1235 818 299 64 78 chr4 85266379 85266738 -70363382 - ORR1E LTR MaLR 0 359 6 3 1235 195 42 0 0 chr4 85267008 85267032 -70363088 + (TAA)n Simple_repeat Simple_repeat 3 26 0 3 1235 326 275 71 64 chr4 85268268 85268408 -70361712 + MLT1A0 LTR MaLR 224 364 -1 3 1235 532 342 130 75 chr4 85272000 85272522 -70357598 + MLT1F2 LTR MaLR 1 551 -9 3 1235 910 320 96 31 chr4 85272524 85273034 -70357086 + MLT1F2-int LTR MaLR 1 543 -946 3 1235 416 320 106 12 chr4 85273023 85273279 -70356841 + MLT1F2-int LTR MaLR 696 975 -514 3 1235 358 281 11 0 chr4 85273277 85273366 -70356754 - B1F SINE Alu -58 91 2 3 1235 220 253 10 125 chr4 85273366 85273381 -70356739 - ID_B1 SINE B4 -55 169 78 3 1235 251 210 158 12 chr4 85273464 85273546 -70356574 + RMER30 DNA MER1_type 52 145 -57 3 1235 246 219 31 0 chr4 85273996 85274060 -70356060 - L1MC1 LINE L1 -31 6302 6237 3 1235 315 328 33 8 chr4 85274828 85274948 -70355172 + MER5A DNA MER1_type 40 162 -27 3 1235 283 162 12 59 chr4 85277484 85277569 -70352551 + L1MA7 LINE L1 6155 6235 -56 3 1235 687 305 39 24 chr4 85278222 85278430 -70351690 - B3 SINE B2 0 216 6 3 1235 1734 133 57 10 chr4 85278502 85278798 -70351322 - Lx2A1 LINE L1 -6 7002 6693 3 1235 209 200 0 0 chr4 85279292 85279327 -70350793 + polypyrimidine Low_complexity Low_complexity 2 36 0 3 1235 5620 65 68 4 chr4 85279335 85280102 -70350018 - L1_Mus1 LINE L1 -1 6566 5751 3 1235 1325 36 6 0 chr4 85280102 85280269 -70349851 + L1_Mus1 LINE L1 5587 5754 -813 3 1235 328 389 0 36 chr4 85280630 85280742 -70349378 + PB1D10 SINE Alu 1 108 -9 3 1235 22 35 0 0 chr4 85281204 85281233 -70348887 + AT_rich Low_complexity Low_complexity 1 29 0 3 1235 720 229 32 19 chr4 85281244 85281400 -70348720 - B3 SINE B2 -57 159 2 3 1235 674 335 78 0 chr4 85281906 85282136 -70347984 + B4A SINE B4 9 256 -36 3 1235 423 106 0 0 chr4 85282137 85282203 -70347917 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1235 188 208 188 0 chr4 85282868 85282916 -70347204 + L2c LINE L2 3125 3181 -206 3 1235 413 62 31 0 chr4 85283540 85283604 -70346516 + (TCTCTG)n Simple_repeat Simple_repeat 4 69 0 3 1235 456 77 0 0 chr4 85283622 85283687 -70346433 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1235 5811 62 49 0 chr4 85284898 85285690 -70344430 + L1_Mus2 LINE L1 5732 6562 -4 3 1235 2656 136 35 7 chr4 85286144 85286574 -70343546 + Lx4A LINE L1 6607 7048 -10 3 1235 21 0 0 0 chr4 85286791 85286812 -70343308 + AT_rich Low_complexity Low_complexity 1 21 0 3 1235 370 330 142 38 chr4 85286851 85287324 -70342796 + BLACKJACK DNA AcHobo 179 700 -2244 3 1235 581 149 0 24 chr4 85287454 85287578 -70342542 + GA-rich Low_complexity Low_complexity 2 122 0 3 1235 1219 41 0 0 chr4 85287614 85287761 -70342359 - B1_Mm SINE Alu 0 147 1 3 1235 726 62 18 18 chr4 85287931 85288045 -70342075 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 3 1235 349 320 39 0 chr4 85288045 85288148 -70341972 - PB1D7 SINE Alu -13 107 1 3 1235 450 317 158 20 chr4 85288208 85288707 -70341413 + BLACKJACK DNA AcHobo 852 1419 -1525 3 1235 294 316 51 36 chr4 85288752 85288890 -70341230 + B3A SINE B2 1 140 -58 3 1235 31 0 0 0 chr4 85288945 85288976 -70341144 + AT_rich Low_complexity Low_complexity 1 31 0 3 1235 510 321 41 37 chr4 85289403 85289697 -70340423 + BLACKJACK DNA AcHobo 1747 2041 -903 3 1235 242 204 20 20 chr4 85291316 85291366 -70338754 - L2a LINE L2 -11 3415 3366 3 1235 315 0 0 0 chr4 85293360 85293395 -70336725 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1235 368 386 40 17 chr4 85293608 85293782 -70336338 - MLT1J LTR MaLR -130 382 205 4 1235 262 229 57 0 chr4 85294419 85294489 -70335631 - LTR50 LTR ERVL -18 777 704 4 1235 391 222 182 18 chr4 85294525 85294635 -70335485 + MER20 DNA MER1_type 4 131 -88 4 1235 687 44 0 0 chr4 85295170 85295261 -70334859 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1235 544 314 131 59 chr4 85296266 85296655 -70333465 - MLT1C LTR MaLR -9 458 42 4 1235 582 341 28 55 chr4 85296740 85297029 -70333091 + MLT1L LTR MaLR 199 479 -131 4 1235 207 0 0 0 chr4 85298835 85298858 -70331262 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1235 7424 139 23 3 chr4 85299332 85300792 -70329328 - Lx LINE L1 -690 5964 4473 4 1235 3806 148 40 11 chr4 85300793 85301435 -70328685 + Lx LINE L1 5980 6640 -14 4 1235 206 250 50 0 chr4 85302381 85302441 -70327679 - MIRm SINE MIR -11 265 203 4 1235 665 244 22 0 chr4 85302576 85302711 -70327409 + RSINE1 SINE B4 3 140 -25 4 1235 311 312 96 28 chr4 85302711 85302754 -70327366 + B2_Mm2 SINE B2 2 191 -4 4 1235 277 354 60 89 chr4 85305303 85305653 -70324467 + L2c LINE L2 3034 3373 -14 4 1235 396 0 0 0 chr4 85306795 85306839 -70323281 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1235 231 36 0 0 chr4 85306839 85306866 -70323254 + (CG)n Simple_repeat Simple_repeat 1 28 0 4 1235 1395 155 47 117 chr4 85307298 85307684 -70322436 - RMER1B Other Other -4 1062 704 4 1235 1376 159 17 7 chr4 85307703 85307980 -70322140 + RMER1B Other Other 300 732 -334 4 1235 23 0 0 0 chr4 85308464 85308487 -70321633 + AT_rich Low_complexity Low_complexity 1 23 0 4 1235 24 0 0 0 chr4 85309251 85309275 -70320845 + AT_rich Low_complexity Low_complexity 1 24 0 4 1235 202 211 0 0 chr4 85311195 85311233 -70318887 + T-rich Low_complexity Low_complexity 2 39 0 4 1235 1143 57 0 0 chr4 85311247 85311388 -70318732 - B1_Mus2 SINE Alu -6 141 1 4 1235 498 254 132 41 chr4 85313881 85314078 -70316042 + ID_B1 SINE B4 2 216 -8 4 1235 26 0 0 0 chr4 85314083 85314109 -70316011 + AT_rich Low_complexity Low_complexity 1 26 0 4 1235 363 340 9 9 chr4 85314174 85314281 -70315839 + B1F SINE Alu 2 108 -41 4 1235 497 289 139 0 chr4 85315130 85315317 -70314803 + B3 SINE B2 2 214 -2 4 1235 513 327 25 63 chr4 85315580 85315864 -70314256 + L3b LINE CR1 10 282 -200 4 1235 415 247 178 8 chr4 85316614 85316855 -70313265 + MER33 DNA MER1_type 11 292 -32 4 1235 543 281 126 7 chr4 85316862 85317156 -70312964 + Lx9 LINE L1 7069 7397 -247 4 1235 369 0 0 0 chr4 85317156 85317197 -70312923 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1235 185 0 40 0 chr4 85317881 85317906 -70312214 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1235 307 190 56 0 chr4 85318762 85318904 -70311216 + GA-rich Low_complexity Low_complexity 2 151 0 4 1235 588 84 0 0 chr4 85318937 85319020 -70311100 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 4 1235 21 0 0 0 chr4 85319822 85319843 -70310277 + AT_rich Low_complexity Low_complexity 1 21 0 4 1235 657 0 0 0 chr4 85320065 85320138 -70309982 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 4 1235 1195 35 7 0 chr4 85320143 85320284 -70309836 - B1_Mus1 SINE Alu -6 142 1 4 1235 607 25 0 0 chr4 85320304 85320415 -70309705 - L1Md_F2 LINE L1 0 6582 6483 4 1235 498 46 0 0 chr4 85321262 85321327 -70308793 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1235 942 210 423 4 chr4 85321577 85321851 -70308269 - ORR1B2 LTR MaLR -5 389 1 4 1235 996 265 46 71 chr4 85322521 85322887 -70307233 + ORR1E LTR MaLR 1 357 -2 4 1235 22 0 0 0 chr4 85323212 85323234 -70306886 + AT_rich Low_complexity Low_complexity 1 22 0 4 1235 214 229 16 32 chr4 85324895 85324958 -70305162 + GA-rich Low_complexity Low_complexity 4 65 0 4 1235 1541 6 0 0 chr4 85325658 85325836 -70304284 + L1Md_A LINE L1 6405 6582 0 4 1235 2363 272 64 25 chr4 85326354 85326518 -70303602 - Lx8 LINE L1 -6 7467 7285 4 1235 276 30 0 0 chr4 85326518 85326551 -70303569 + (TATG)n Simple_repeat Simple_repeat 4 36 0 4 1235 2363 272 64 25 chr4 85326551 85327182 -70302938 - Lx8 LINE L1 -189 7284 6642 4 1235 180 182 0 0 chr4 85327713 85327757 -70302363 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 154 454 285 7 0 chr4 85327852 85327996 -70302124 - L1MA4 LINE L1 -370 5930 5786 4 1236 27 0 0 0 chr4 85328918 85328945 -70301175 + AT_rich Low_complexity Low_complexity 1 27 0 4 1236 866 268 57 63 chr4 85330877 85331208 -70298912 + MTEa LTR MaLR 51 379 0 4 1236 796 330 30 80 chr4 85331268 85331568 -70298552 + B4A SINE B4 3 287 -5 4 1236 238 298 123 19 chr4 85331841 85331947 -70298173 - L2a LINE L2 -35 3391 3275 4 1236 213 178 22 22 chr4 85331947 85331993 -70298127 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 4 1236 342 311 229 16 chr4 85332029 85332287 -70297833 - L2a LINE L2 -157 3269 2957 4 1236 229 335 107 41 chr4 85332373 85332569 -70297551 + MIRb SINE MIR 2 210 -58 4 1236 180 182 0 0 chr4 85333072 85333116 -70297004 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 4 1236 377 55 36 0 chr4 85333127 85333182 -70296938 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 4 1236 526 259 88 58 chr4 85334780 85335178 -70294942 + L1M3 LINE L1 4784 5193 -947 4 1236 240 350 10 0 chr4 85335258 85335355 -70294765 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1236 186 43 0 0 chr4 85336066 85336089 -70294031 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1236 330 91 0 0 chr4 85336089 85336144 -70293976 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1236 637 273 22 0 chr4 85336162 85336301 -70293819 - RSINE1 SINE B4 -22 143 2 4 1236 292 228 63 32 chr4 85339383 85339478 -70290642 + MER5A1 DNA MER1_type 62 159 -7 4 1236 342 355 56 42 chr4 85339534 85339840 -70290280 - L1MC5 LINE L1 -1008 6953 6644 4 1236 2444 230 53 12 chr4 85340047 85340636 -70289484 + Lx6 LINE L1 6842 7454 -6 4 1236 21 0 0 0 chr4 85340714 85340735 -70289385 + AT_rich Low_complexity Low_complexity 1 21 0 4 1236 260 291 0 23 chr4 85341000 85341088 -70289032 - B3A SINE B2 -103 95 10 4 1236 398 208 0 13 chr4 85341011 85341089 -70289031 - B4A SINE B4 -207 85 9 4 1236 277 306 30 10 chr4 85341207 85341306 -70288814 + Charlie5 DNA MER1_type 2 102 -2522 4 1236 248 324 137 8 chr4 85342027 85342407 -70287713 - L1M4 LINE L1 -396 5783 5355 4 1236 703 342 34 41 chr4 85342414 85342707 -70287413 - B4A SINE B4 -1 291 1 4 1236 253 199 116 0 chr4 85342846 85342953 -70287167 - L1M4 LINE L1 -1067 5079 4963 4 1236 467 340 97 0 chr4 85343070 85343308 -70286812 - L1M4 LINE L1 -1327 4819 4559 4 1236 195 42 0 0 chr4 85343387 85343411 -70286709 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1236 347 329 35 13 chr4 85343543 85343774 -70286346 - L1MD LINE L1 -1855 4291 4056 4 1236 332 323 8 23 chr4 85343924 85344057 -70286063 + CT-rich Low_complexity Low_complexity 2 132 0 4 1236 26 0 0 0 chr4 85344246 85344272 -70285848 + AT_rich Low_complexity Low_complexity 1 26 0 4 1236 1175 241 136 59 chr4 85344301 85344675 -70285445 + MTD LTR MaLR 10 412 -7 4 1236 1662 153 31 65 chr4 85344992 85345313 -70284807 + ORR1A4 LTR MaLR 1 310 -19 4 1236 298 71 0 0 chr4 85345801 85345843 -70284277 - Lx LINE L1 -709 5945 5904 4 1236 6645 128 24 14 chr4 85345843 85346911 -70283209 + Lx2 LINE L1 5919 6997 0 4 1236 1174 67 6 6 chr4 85346912 85347078 -70283042 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 4 1236 608 125 0 0 chr4 85348152 85348248 -70281872 + L1_Mur2 LINE L1 4345 4440 -1437 4 1236 358 231 79 53 chr4 85348367 85348481 -70281639 - Lx7 LINE L1 -375 7321 7205 4 1236 237 185 200 32 chr4 85348516 85348611 -70281509 - MER103 DNA DNA -50 116 6 4 1236 246 95 0 0 chr4 85348858 85348900 -70281220 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1236 248 70 0 23 chr4 85348989 85349033 -70281087 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1236 4135 66 0 2 chr4 85349089 85349617 -70280503 + L1Md_F2 LINE L1 6044 6570 -12 4 1236 3204 255 82 31 chr4 85349678 85351460 -70278660 - Lx7 LINE L1 -408 7288 5381 4 1236 425 161 11 0 chr4 85352835 85352922 -70277198 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 1236 486 0 0 0 chr4 85352943 85352997 -70277123 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1236 662 270 72 39 chr4 85355931 85356139 -70273981 - B3 SINE B2 0 216 2 4 1236 789 246 45 9 chr4 85356770 85356991 -70273129 + MER121 Unknown Unknown 84 312 -100 4 1236 708 68 0 0 chr4 85357381 85357484 -70272636 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1236 852 117 0 0 chr4 85357484 85357637 -70272483 + (GA)n Simple_repeat Simple_repeat 1 154 0 4 1236 251 272 74 0 chr4 85358322 85358403 -70271717 + L2b LINE L2 3287 3373 -2 4 1236 7619 58 4 0 chr4 85359669 85360745 -70269375 + L1_Mus1 LINE L1 5486 6565 -2 4 1236 672 124 0 0 chr4 85360757 85360862 -70269258 + (GAA)n Simple_repeat Simple_repeat 2 106 0 4 1236 392 78 0 0 chr4 85360862 85360913 -70269207 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 4 1236 4045 23 0 0 chr4 85361027 85361508 -70268612 - MERVL-int LTR ERVL -935 4550 4070 4 1236 286 373 36 12 chr4 85363436 85363604 -70266516 - MIR SINE MIR -7 255 84 4 1236 225 283 32 11 chr4 85363781 85363874 -70266246 + RLTR20A2 LTR ERVK 107 201 -377 4 1236 851 184 6 22 chr4 85363877 85364248 -70265872 + GA-rich Low_complexity Low_complexity 1 364 0 4 1236 223 152 0 0 chr4 85364249 85364282 -70265838 + polypurine Low_complexity Low_complexity 4 36 0 4 1236 972 75 105 0 chr4 85365190 85365323 -70264797 - B1_Mus2 SINE Alu 0 147 1 4 1236 199 352 157 16 chr4 85365371 85365677 -70264443 + L2a LINE L2 2403 2751 -668 5 1236 28 0 0 0 chr4 85365713 85365741 -70264379 + AT_rich Low_complexity Low_complexity 1 28 0 5 1236 315 0 0 0 chr4 85365869 85365904 -70264216 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1236 327 25 0 0 chr4 85365927 85365967 -70264153 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1236 262 345 19 39 chr4 85366010 85366164 -70263956 - Lx9 LINE L1 -292 7352 7202 5 1236 526 270 5 75 chr4 85366163 85366363 -70263757 + Lx9 LINE L1 6975 7160 -484 5 1236 206 350 117 35 chr4 85366466 85366805 -70263315 + L2a LINE L2 2869 3246 -180 5 1236 841 274 18 0 chr4 85366826 85367049 -70263071 - MER2 DNA MER2_type -4 341 115 5 1236 524 276 344 0 chr4 85368629 85368771 -70261349 - MTD LTR MaLR -42 377 178 5 1236 675 0 0 0 chr4 85368771 85368846 -70261274 + (TTA)n Simple_repeat Simple_repeat 3 77 0 5 1236 524 283 278 18 chr4 85368846 85368983 -70261137 - MTD LTR MaLR -242 177 3 5 1236 726 323 148 54 chr4 85369248 85369749 -70260371 - MLT1F LTR MaLR 0 548 1 5 1236 2175 242 121 0 chr4 85370043 85370597 -70259523 - Lx6 LINE L1 -8 7452 6832 5 1236 277 191 0 0 chr4 85370620 85370667 -70259453 - Lx6 LINE L1 -763 6697 6651 5 1236 201 220 74 74 chr4 85371011 85371065 -70259055 - L2 LINE L2 -3014 405 352 5 1236 369 347 71 0 chr4 85371758 85371928 -70258192 - L1MB7 LINE L1 -135 6049 5868 5 1236 617 0 14 0 chr4 85371937 85372010 -70258110 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 1236 2121 311 53 16 chr4 85372119 85372980 -70257140 - Lx8 LINE L1 -220 7253 6361 5 1236 250 386 74 22 chr4 85373054 85373189 -70256931 - ID_B1 SINE B4 -82 142 1 5 1236 265 303 35 25 chr4 85373197 85373400 -70256720 - L1M4 LINE L1 -303 5881 5677 5 1236 376 278 37 0 chr4 85373414 85373522 -70256598 - PB1D10 SINE Alu -4 113 2 5 1236 234 0 0 0 chr4 85374786 85374812 -70255308 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1236 1020 279 57 13 chr4 85375277 85375578 -70254542 + MTEa LTR MaLR 28 341 -38 5 1236 213 330 28 0 chr4 85376016 85376125 -70253995 + CT-rich Low_complexity Low_complexity 5 116 0 5 1236 305 169 12 0 chr4 85377023 85377106 -70253014 + CT-rich Low_complexity Low_complexity 1 84 0 5 1236 361 283 30 10 chr4 85377221 85377321 -70252799 + MTEb LTR MaLR 278 379 0 5 1236 234 254 0 43 chr4 85377469 85377539 -70252581 + MT2A LTR ERVL 63 129 -404 5 1236 700 277 127 32 chr4 85377478 85377761 -70252359 + MTE2b LTR MaLR 70 379 0 5 1236 7219 82 4 17 chr4 85378012 85379477 -70250643 + L1_Mus2 LINE L1 5123 6566 0 5 1236 477 0 0 0 chr4 85379480 85379533 -70250587 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1236 4365 134 37 11 chr4 85379552 85380305 -70249815 - Lx4A LINE L1 -653 6405 5633 5 1236 276 307 166 18 chr4 85381239 85381408 -70248712 + MIRc SINE MIR 69 262 -6 5 1236 836 254 12 12 chr4 85382470 85382641 -70247479 + B3 SINE B2 1 171 -45 5 1236 321 26 0 0 chr4 85382689 85382727 -70247393 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1236 182 369 96 37 chr4 85383061 85383196 -70246924 - L2b LINE L2 0 3375 3233 5 1236 265 303 88 24 chr4 85383289 85383414 -70246706 - MER68 LTR ERVL -13 550 418 5 1236 949 249 19 0 chr4 85383440 85383649 -70246471 - B3 SINE B2 -3 213 1 5 1236 254 362 25 17 chr4 85383766 85383884 -70246236 - MER68 LTR ERVL -423 140 22 5 1236 642 113 0 0 chr4 85383993 85384090 -70246030 + (TG)n Simple_repeat Simple_repeat 1 97 0 5 1236 318 212 146 0 chr4 85384103 85384240 -70245880 + Lx9 LINE L1 7465 7621 -23 5 1236 490 15 30 0 chr4 85385303 85385370 -70244750 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1236 1988 191 42 0 chr4 85385769 85386125 -70243995 + RLTR30 LTR ERV1 1 371 -8 5 1236 210 265 61 0 chr4 85386260 85386309 -70243811 + ID4 SINE ID 2 53 -30 5 1236 715 288 67 46 chr4 85389198 85389950 -70240170 + L1MC LINE L1 4912 5673 -2112 5 1236 440 350 73 7 chr4 85390004 85390178 -70239942 + B3A SINE B2 2 189 -27 5 1236 390 324 44 6 chr4 85390828 85391011 -70239109 + Lx8 LINE L1 6943 7132 -341 5 1236 247 306 92 33 chr4 85391018 85391170 -70238950 + Lx8 LINE L1 7257 7417 -56 5 1236 7220 94 88 11 chr4 85391388 85392492 -70237628 - Lx3A LINE L1 -7 6974 5786 5 1236 422 299 18 48 chr4 85393320 85393485 -70236635 + RSINE1 SINE B4 4 163 -2 5 1236 245 347 51 0 chr4 85394642 85394740 -70235380 + MER5A DNA MER1_type 4 106 -83 5 1236 738 86 0 0 chr4 85395737 85395853 -70234267 + (TC)n Simple_repeat Simple_repeat 1 116 0 5 1236 608 317 48 5 chr4 85396298 85396504 -70233616 - RMER15 LTR ERVL 0 575 361 5 1236 557 259 60 66 chr4 85397198 85397380 -70232740 - B3A SINE B2 -9 189 9 5 1236 213 132 0 0 chr4 85398523 85398561 -70231559 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 1236 232 230 13 63 chr4 85399934 85400013 -70230107 - MLT1G LTR MaLR -15 576 502 5 1236 318 50 0 0 chr4 85401258 85401298 -70228822 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 1236 442 337 93 36 chr4 85401381 85401698 -70228422 - LTR16B2 LTR ERVL -102 378 22 5 1236 660 115 0 0 chr4 85402245 85402358 -70227762 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 1236 21 57 0 0 chr4 85403666 85403701 -70226419 + AT_rich Low_complexity Low_complexity 1 35 0 5 1236 1223 80 0 4 chr4 85405106 85405369 -70224751 + (GAA)n Simple_repeat Simple_repeat 1 262 0 5 1236 261 0 0 0 chr4 85407430 85407459 -70222661 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1236 233 385 33 0 chr4 85407495 85407586 -70222534 - MLT1J2 LTR MaLR -352 96 3 5 1236 983 113 7 0 chr4 85407876 85408017 -70222103 + B1_Mus2 SINE Alu 5 146 -1 5 1236 21 82 0 0 chr4 85408167 85408216 -70221904 + AT_rich Low_complexity Low_complexity 1 49 0 5 1236 459 318 80 0 chr4 85408418 85408569 -70221551 - B3 SINE B2 -6 210 48 5 1236 180 0 0 0 chr4 85408974 85408994 -70221126 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1236 1501 53 11 0 chr4 85409457 85409644 -70220476 + B2_Mm1t SINE B2 1 189 -4 5 1236 241 365 144 0 chr4 85409957 85410138 -70219982 + MIRb SINE MIR 5 211 -57 5 1236 948 129 14 0 chr4 85413393 85413532 -70216588 - B1_Mur4 SINE Alu -6 144 4 5 1236 512 293 35 23 chr4 85413657 85413828 -70216292 + B3 SINE B2 1 173 -43 5 1236 26 50 0 0 chr4 85414583 85414623 -70215497 + AT_rich Low_complexity Low_complexity 1 40 0 5 1236 407 273 28 95 chr4 85416494 85416736 -70213384 - RMER15 LTR ERVL -11 564 296 5 1236 242 311 69 69 chr4 85416730 85416889 -70213231 - RMER15 LTR ERVL -416 159 1 5 1236 219 215 15 15 chr4 85417053 85417119 -70213001 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 5 1236 246 174 0 0 chr4 85418387 85418433 -70211687 + GA-rich Low_complexity Low_complexity 2 47 0 5 1236 23 33 0 0 chr4 85419134 85419164 -70210956 + AT_rich Low_complexity Low_complexity 1 30 0 5 1236 1033 264 50 83 chr4 85419989 85420352 -70209768 + MTE2a LTR MaLR 1 351 -28 5 1236 288 53 0 0 chr4 85420509 85420547 -70209573 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1236 264 232 0 0 chr4 85421143 85421199 -70208921 + RMER15 LTR ERVL 403 458 -117 5 1236 6459 64 24 1 chr4 85421717 85422609 -70207511 - L1_Mus3 LINE L1 -7 6631 5720 5 1236 21 36 0 0 chr4 85422730 85422758 -70207362 + AT_rich Low_complexity Low_complexity 1 28 0 5 1236 521 271 170 40 chr4 85422766 85423012 -70207108 + B4 SINE B4 11 288 -4 5 1236 324 0 0 0 chr4 85423039 85423075 -70207045 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1236 1243 65 65 0 chr4 85423413 85423599 -70206521 - L1_Mus3 LINE L1 -252 6386 6189 5 1236 1721 164 47 6 chr4 85423600 85423920 -70206200 - RLTR11A2 LTR ERVK -194 333 1 5 1236 1164 284 73 8 chr4 85424073 85424476 -70205644 - Lx6 LINE L1 -150 7310 6507 5 1236 396 284 78 50 chr4 85424479 85424620 -70205500 - B1F2 SINE Alu 0 149 5 5 1236 775 286 6 27 chr4 85424498 85424681 -70205439 - ID_B1 SINE B4 -22 202 24 5 1236 906 330 10 3 chr4 85424762 85425060 -70205060 - RMER1C Other Other -589 753 454 5 1236 1965 120 39 18 chr4 85425627 85425958 -70204162 - IAPEY_LTR LTR ERVK 0 385 48 5 1236 242 338 0 13 chr4 85426037 85426115 -70204005 + ID4_ SINE ID 15 91 -61 5 1236 443 322 68 0 chr4 85427415 85427533 -70202587 - RSINE1 SINE B4 -36 129 4 5 1236 207 0 0 0 chr4 85427580 85427603 -70202517 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1236 211 320 57 19 chr4 85428498 85428603 -70201517 - MIR SINE MIR -117 145 37 5 1236 198 0 0 0 chr4 85429046 85429068 -70201052 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 5 1236 771 83 0 0 chr4 85429068 85429175 -70200945 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1236 798 321 63 22 chr4 85430676 85430991 -70199129 - MER2 DNA MER2_type -8 337 10 5 1236 828 299 38 16 chr4 85434430 85434483 -70195637 - MTEb LTR MaLR 0 379 327 5 1236 504 0 0 0 chr4 85434483 85434539 -70195581 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 5 1236 828 299 38 16 chr4 85434539 85434856 -70195264 - MTEb LTR MaLR -53 326 3 5 1236 584 305 217 5 chr4 85434857 85435078 -70195042 + B4A SINE B4 3 270 -22 5 1236 306 0 0 0 chr4 85435112 85435146 -70194974 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1236 467 253 0 0 chr4 85435164 85435259 -70194861 + ID_B1 SINE B4 130 224 0 5 1236 306 73 0 0 chr4 85435261 85435302 -70194818 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1236 276 77 0 0 chr4 85435783 85435822 -70194298 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1236 796 156 16 0 chr4 85435855 85435983 -70194137 - B3 SINE B2 -86 130 1 5 1236 881 268 16 73 chr4 85435983 85436217 -70193903 - B4A SINE B4 -71 221 2 5 1236 956 60 105 0 chr4 85437822 85437955 -70192165 + B1_Mus1 SINE Alu 2 148 0 5 1236 1017 116 7 0 chr4 85439236 85439383 -70190737 - Lx2B LINE L1 -177 6823 6676 6 1236 298 143 0 0 chr4 85439379 85439435 -70190685 + L1_Mur2 LINE L1 4093 4148 -1729 6 1236 3204 140 8 4 chr4 85439435 85439938 -70190182 + MT2B LTR ERVL 97 601 0 6 1236 3445 65 13 2 chr4 85440239 85440687 -70189433 - L1_Mus2 LINE L1 -1 6565 6113 6 1236 653 291 26 42 chr4 85441263 85441453 -70188667 + B3A SINE B2 3 189 -9 6 1236 1282 272 53 35 chr4 85441592 85442102 -70188018 - Lx7 LINE L1 -883 6813 6295 6 1236 1390 31 0 40 chr4 85442100 85442301 -70187819 + L1Md_F3 LINE L1 6383 6575 -9 6 1236 498 267 45 40 chr4 85442295 85442494 -70187626 - Lx7 LINE L1 -1404 6292 6093 6 1236 2130 221 137 25 chr4 85442527 85443331 -70186789 - Lx7 LINE L1 -1712 5984 5110 6 1236 5662 93 10 2 chr4 85443336 85444153 -70185967 - Lx LINE L1 -209 6445 5623 6 1236 4109 153 27 0 chr4 85444153 85444897 -70185223 + Lx3C LINE L1 4879 5642 -1334 6 1236 21 0 0 0 chr4 85445090 85445111 -70185009 + AT_rich Low_complexity Low_complexity 1 21 0 6 1236 251 193 22 22 chr4 85447544 85447634 -70182486 + CT-rich Low_complexity Low_complexity 3 92 0 6 1236 24 0 0 0 chr4 85448154 85448178 -70181942 + AT_rich Low_complexity Low_complexity 1 24 0 6 1236 1001 189 90 88 chr4 85448179 85448253 -70181867 + Lx7 LINE L1 7315 7363 -333 6 1236 486 0 0 0 chr4 85448253 85448307 -70181813 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 6 1236 1001 189 90 88 chr4 85448307 85448371 -70181749 + Lx7 LINE L1 7364 7422 -274 6 1236 432 123 0 0 chr4 85448371 85448444 -70181676 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1236 1001 189 90 88 chr4 85448444 85448681 -70181439 + Lx7 LINE L1 7423 7691 -5 6 1236 452 288 37 112 chr4 85449183 85449299 -70180821 + Zaphod DNA Tip100 2540 2637 -1394 6 1236 434 259 82 72 chr4 85449299 85449507 -70180613 - ID_B1 SINE B4 -14 210 1 6 1236 452 288 37 112 chr4 85449507 85449605 -70180515 + Zaphod DNA Tip100 2638 2738 -1293 6 1236 369 0 0 0 chr4 85449606 85449647 -70180473 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1236 342 337 37 99 chr4 85449649 85449840 -70180280 + B3A SINE B2 19 197 -1 6 1236 444 273 54 9 chr4 85450335 85450446 -70179674 - B3A SINE B2 -82 116 1 6 1236 292 276 74 7 chr4 85450446 85450581 -70179539 + Zaphod DNA Tip100 3798 3941 -90 6 1236 1614 78 23 0 chr4 85450591 85450864 -70179256 - L1_Mus1 LINE L1 0 6567 6339 6 1236 387 314 99 32 chr4 85452251 85452504 -70177616 - L1MEe LINE L1 -4144 710 441 6 1236 597 28 0 0 chr4 85452510 85452581 -70177539 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1236 258 56 0 0 chr4 85453307 85453343 -70176777 + (ACTG)n Simple_repeat Simple_repeat 2 37 0 6 1236 658 271 61 128 chr4 85453415 85453923 -70176197 + RMER20B LTR ERVK 30 569 -58 6 1236 481 261 132 11 chr4 85454077 85454267 -70175853 + B3 SINE B2 4 216 0 6 1236 485 320 33 57 chr4 85454272 85454484 -70175636 - MLT1A1 LTR MaLR -51 357 151 6 1236 386 260 55 27 chr4 85454615 85454779 -70175341 - MLT1A1-int LTR MaLR -12 1723 1591 6 1236 24 77 0 0 chr4 85454982 85455034 -70175086 + AT_rich Low_complexity Low_complexity 1 52 0 6 1236 707 311 29 33 chr4 85455186 85455459 -70174661 - B4A SINE B4 -18 274 3 6 1236 227 337 28 47 chr4 85455503 85455609 -70174511 - Tigger15a DNA TcMar -456 259 156 6 1236 524 155 49 0 chr4 85455831 85455973 -70174147 + (TA)n Simple_repeat Simple_repeat 2 150 0 6 1236 498 165 25 25 chr4 85456750 85456912 -70173208 + CT-rich Low_complexity Low_complexity 3 164 0 6 1236 227 173 0 37 chr4 85457351 85457405 -70172715 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1237 321 306 279 45 chr4 85459102 85459417 -70170703 + L2 LINE L2 1864 2252 -1167 6 1237 6957 167 57 3 chr4 85460970 85462605 -70167515 - Lx2B LINE L1 0 7000 5269 6 1237 301 256 134 24 chr4 85462615 85462699 -70167421 - L1MC3 LINE L1 -26 7759 7664 6 1237 393 75 0 0 chr4 85462699 85462752 -70167368 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1237 505 28 28 0 chr4 85462752 85462822 -70167298 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1237 301 256 134 24 chr4 85462822 85462900 -70167220 - L1MC3 LINE L1 -122 7663 7579 6 1237 285 29 0 0 chr4 85464167 85464201 -70165919 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1237 734 295 12 0 chr4 85467278 85467451 -70162669 + B3A SINE B2 7 181 -17 6 1237 1214 71 53 12 chr4 85468225 85468396 -70161724 + B2_Mm2 SINE B2 1 178 -17 6 1237 553 264 6 0 chr4 85468605 85468768 -70161352 + L1M3 LINE L1 3761 3924 -2216 6 1237 1488 167 24 41 chr4 85468905 85469125 -70160995 + MTC LTR MaLR 126 346 -75 6 1237 208 28 83 0 chr4 85469125 85469161 -70160959 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 6 1237 1488 167 24 41 chr4 85469161 85469233 -70160887 + MTC LTR MaLR 347 413 -8 6 1237 23 54 0 0 chr4 85469599 85469636 -70160484 + AT_rich Low_complexity Low_complexity 1 37 0 6 1237 1787 214 77 5 chr4 85469793 85470183 -70159937 + MTD LTR MaLR 1 418 -1 6 1237 297 0 0 0 chr4 85470747 85470780 -70159340 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1237 387 0 0 0 chr4 85471100 85471143 -70158977 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1237 333 47 0 0 chr4 85471831 85471874 -70158246 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1237 474 314 95 30 chr4 85471930 85472193 -70157927 - B4A SINE B4 -12 280 1 6 1237 772 108 8 8 chr4 85473068 85473199 -70156921 + (GGAA)n Simple_repeat Simple_repeat 1 131 0 6 1237 360 0 0 0 chr4 85475462 85475502 -70154618 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 6 1237 1800 297 42 23 chr4 85476284 85476935 -70153185 - Lx9 LINE L1 -675 6969 6307 6 1237 349 177 35 9 chr4 85476938 85477052 -70153068 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1237 1440 53 0 0 chr4 85478526 85478864 -70151256 + (TG)n Simple_repeat Simple_repeat 1 338 0 6 1237 219 222 55 14 chr4 85479176 85479249 -70150871 - L2c LINE L2 -44 3343 3268 6 1237 489 286 77 99 chr4 85480049 85480270 -70149850 + B3 SINE B2 1 216 0 6 1237 467 274 15 7 chr4 85480370 85480506 -70149614 + L1MB4 LINE L1 5483 5619 -561 6 1237 411 21 0 0 chr4 85480922 85480970 -70149150 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1237 434 222 59 17 chr4 85481076 85481195 -70148925 + ID_B1 SINE B4 56 179 -45 6 1237 714 76 5 0 chr4 85481104 85481213 -70148907 + B1_Mus1 SINE Alu 9 120 0 6 1237 24 0 0 0 chr4 85481213 85481237 -70148883 + AT_rich Low_complexity Low_complexity 1 24 0 6 1237 286 268 181 3 chr4 85481287 85481565 -70148555 + L1MB4 LINE L1 5841 6180 -3 6 1237 282 359 40 31 chr4 85482192 85482419 -70147701 + L2 LINE L2 1997 2225 -1194 6 1237 405 70 0 0 chr4 85485186 85485243 -70144877 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1237 190 193 0 34 chr4 85485679 85485738 -70144382 + GA-rich Low_complexity Low_complexity 1 57 0 6 1237 302 0 0 26 chr4 85485919 85485958 -70144162 + (TCC)n Simple_repeat Simple_repeat 3 40 0 6 1237 219 103 0 0 chr4 85485975 85486014 -70144106 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 6 1237 1200 63 17 6 chr4 85486014 85486189 -70143931 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1237 282 371 0 24 chr4 85486545 85486672 -70143448 + MLT1B LTR MaLR 199 322 -68 6 1237 1633 55 5 18 chr4 85486730 85486993 -70143127 + L1Md_F2 LINE L1 6361 6582 0 6 1237 260 216 10 17 chr4 85487010 85487076 -70143044 + MLT1B LTR MaLR 295 373 -1 6 1237 255 377 66 90 chr4 85487688 85487932 -70142188 + MIRb SINE MIR 23 264 -4 6 1237 293 354 42 42 chr4 85488591 85488827 -70141293 - Lx8 LINE L1 -1204 6269 6034 6 1237 250 257 0 28 chr4 85488831 85488903 -70141217 + Lx8 LINE L1 6264 6333 -1140 6 1237 355 289 0 0 chr4 85488972 85489069 -70141051 + Lx8 LINE L1 6351 6447 -1026 6 1237 316 292 14 71 chr4 85489428 85489568 -70140552 + MT2B LTR ERVL 152 283 -318 6 1237 646 266 36 0 chr4 85489445 85489584 -70140536 + B1F2 SINE Alu 6 149 0 6 1237 6320 163 32 24 chr4 85492876 85494499 -70135621 - Lx4B LINE L1 -11 6965 5317 6 1237 1099 95 7 0 chr4 85494499 85494646 -70135474 + B1_Mus1 SINE Alu 1 148 0 6 1237 3414 150 38 59 chr4 85494646 85494792 -70135328 - Lx4B LINE L1 -561 5316 5183 6 1237 198 128 0 0 chr4 85494792 85494831 -70135289 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1237 1296 25 0 0 chr4 85494851 85495008 -70135112 - L1Md_A LINE L1 -3 6579 6423 6 1237 388 188 0 24 chr4 85495008 85495090 -70135030 - Lx4B LINE L1 -693 5184 5105 6 1237 4380 149 32 27 chr4 85495090 85495940 -70134180 + Lx4B LINE L1 4268 5121 -756 6 1237 724 330 5 5 chr4 85496550 85496751 -70133369 - MLT1A0 LTR MaLR -18 347 147 6 1237 552 298 110 34 chr4 85496858 85497122 -70132998 - B4A SINE B4 -8 284 1 6 1237 515 306 92 13 chr4 85497523 85497720 -70132400 - B3A SINE B2 -1 215 1 6 1237 269 208 62 10 chr4 85498720 85498817 -70131303 + Lx9 LINE L1 7521 7622 -22 6 1237 798 65 0 53 chr4 85498837 85498968 -70131152 + L1Md_F2 LINE L1 6458 6581 -1 6 1237 444 318 93 27 chr4 85501083 85501558 -70128562 - L1ME1 LINE L1 -9 6170 5665 1 1237 389 240 45 40 chr4 85501753 85501953 -70128167 - L1MC LINE L1 -770 5376 5176 2 1237 1328 105 5 0 chr4 85502295 85502485 -70127635 - B2_Mm2 SINE B2 -4 191 1 3 1237 23 68 0 0 chr4 85502601 85502645 -70127475 + AT_rich Low_complexity Low_complexity 1 44 0 4 1237 238 205 127 13 chr4 85502649 85502728 -70127392 - Lx8 LINE L1 -2 7471 7384 5 1237 1570 320 42 43 chr4 85502771 85503111 -70127009 - Lx8 LINE L1 -56 7417 7081 6 1237 3218 129 14 2 chr4 85503111 85503623 -70126497 - Lx3_Mus LINE L1 -5 7004 6487 7 1237 1570 320 42 43 chr4 85503623 85504184 -70125936 - Lx8 LINE L1 -393 7080 6517 6 1237 446 305 59 36 chr4 85504387 85504800 -70125320 - Lx8 LINE L1 -1284 6189 5763 6 1237 1184 254 23 25 chr4 85504814 85505209 -70124911 + L1_Mur3 LINE L1 4494 4887 -993 8 1237 2732 212 136 17 chr4 85505205 85505953 -70124167 + RMER1B Other Other 131 1053 -13 9 1237 1665 290 61 22 chr4 85505999 85506860 -70123260 + L1_Mur3 LINE L1 4879 5794 -86 8 1237 225 0 0 0 chr4 85507005 85507030 -70123090 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1237 478 296 284 42 chr4 85507030 85507254 -70122866 + B4 SINE B4 15 292 0 1 1237 201 360 0 0 chr4 85507256 85507331 -70122789 + (CATA)n Simple_repeat Simple_repeat 1 75 0 1 1237 566 313 107 4 chr4 85507453 85507687 -70122433 + MER2 DNA MER2_type 81 338 -7 1 1237 1976 250 129 8 chr4 85507694 85508545 -70121575 - L1MA9 LINE L1 -78 6234 5281 1 1237 1109 349 18 54 chr4 85508710 85509579 -70120541 - Lx8 LINE L1 -379 7094 6257 1 1237 344 222 111 0 chr4 85509655 85509772 -70120348 - L1MA9 LINE L1 -2135 4008 3876 1 1237 229 292 11 0 chr4 85509864 85509953 -70120167 - L1MA9 LINE L1 -2251 3889 3800 1 1237 502 292 62 36 chr4 85510059 85510251 -70119869 - B4A SINE B4 -52 240 44 1 1237 510 289 16 37 chr4 85510251 85510495 -70119625 - L1MA9 LINE L1 -2353 3787 3549 1 1237 739 298 53 57 chr4 85510521 85511225 -70118895 - L1MA9 LINE L1 -3244 2896 2196 1 1237 1879 48 0 0 chr4 85511832 85512061 -70118059 + L1_Mus1 LINE L1 6339 6567 0 1 1237 252 259 0 0 chr4 85512132 85512186 -70117934 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1237 633 319 34 22 chr4 85512186 85512602 -70117518 - Lx9 LINE L1 -176 7468 7048 1 1237 737 300 17 0 chr4 85512608 85512841 -70117279 - Lx9 LINE L1 -757 6887 6651 1 1237 270 0 0 0 chr4 85513286 85513316 -70116804 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1237 4050 98 14 3 chr4 85513530 85514122 -70115998 - Lx2 LINE L1 -2 6995 6398 2 1237 339 63 0 0 chr4 85514138 85514189 -70115931 + L1_Mur1 LINE L1 5485 5539 -347 2 1237 220 299 0 0 chr4 85514817 85514884 -70115236 + GA-rich Low_complexity Low_complexity 2 68 0 2 1237 289 252 0 26 chr4 85515484 85515572 -70114548 + MTE2a LTR MaLR 273 359 -20 2 1237 416 291 25 23 chr4 85515589 85515733 -70114387 - MIRc SINE MIR -120 156 10 2 1237 442 310 125 80 chr4 85516085 85516285 -70113835 - MER58A DNA MER1_type 0 224 16 2 1237 247 289 62 50 chr4 85518333 85518413 -70111707 - Charlie4z DNA MER1_type -84 83 3 2 1237 214 217 15 104 chr4 85519224 85519291 -70110829 - RSINE1 SINE B4 -89 76 16 2 1237 216 171 0 0 chr4 85519981 85520016 -70110104 + T-rich Low_complexity Low_complexity 2 36 0 2 1237 373 299 36 46 chr4 85521323 85521530 -70108590 + MTEb LTR MaLR 169 379 0 3 1237 2541 84 24 0 chr4 85521830 85522201 -70107919 + BGLII_Mus LTR ERVK 43 422 0 3 1237 968 346 17 23 chr4 85522706 85523227 -70106893 - Lx7 LINE L1 -385 7311 6794 3 1237 262 282 28 0 chr4 85523262 85523333 -70106787 + RMER15-int LTR ERVL 4628 4700 -299 3 1237 382 284 16 19 chr4 85523388 85523541 -70106579 + PB1D10 SINE Alu 1 147 0 3 1237 23 33 0 0 chr4 85523889 85523919 -70106201 + AT_rich Low_complexity Low_complexity 1 30 0 3 1237 213 175 0 0 chr4 85526080 85526120 -70104000 + T-rich Low_complexity Low_complexity 1 40 0 3 1237 207 0 0 0 chr4 85526266 85526289 -70103831 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1237 445 307 118 11 chr4 85526881 85527059 -70103061 + B3A SINE B2 1 197 -1 3 1237 531 0 0 0 chr4 85527587 85527646 -70102474 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1237 288 0 0 0 chr4 85527646 85527677 -70102443 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1237 190 267 0 0 chr4 85527729 85527774 -70102346 + L2 LINE L2 36 80 -3339 4 1237 411 329 63 19 chr4 85528562 85528720 -70101400 - MER5A DNA MER1_type -18 171 7 4 1237 1205 159 103 16 chr4 85529011 85529103 -70101017 - Lx3C LINE L1 -5 6971 6878 4 1237 213 39 0 0 chr4 85529103 85529129 -70100991 + (CACCC)n Simple_repeat Simple_repeat 3 28 0 4 1237 1205 159 103 16 chr4 85529129 85529279 -70100841 - Lx3C LINE L1 -99 6877 6710 4 1237 180 348 134 55 chr4 85529613 85529777 -70100343 + MIRb SINE MIR 67 243 -25 4 1237 617 219 154 12 chr4 85529949 85530111 -70100009 + MER5A DNA MER1_type 2 186 -3 4 1237 238 301 94 40 chr4 85530934 85531083 -70099037 + MLT1E2 LTR MaLR 3 159 -468 4 1237 225 306 153 0 chr4 85531084 85531156 -70098964 - ID4 SINE ID 0 83 1 4 1237 734 322 141 73 chr4 85531163 85531257 -70098863 + MLT1E2 LTR MaLR 152 254 -373 4 1237 1456 232 91 40 chr4 85531257 85531652 -70098468 - MTD LTR MaLR 0 419 5 4 1237 734 322 141 73 chr4 85531652 85531982 -70098138 + MLT1E2 LTR MaLR 255 605 -22 4 1237 245 380 23 8 chr4 85532787 85532917 -70097203 + MLT1A0 LTR MaLR 184 315 -50 5 1237 691 254 24 9 chr4 85532941 85533152 -70096968 - Lx6 LINE L1 -26 7434 7221 5 1237 249 33 0 0 chr4 85533154 85533184 -70096936 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1237 312 27 0 0 chr4 85533412 85533449 -70096671 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1237 1448 227 104 10 chr4 85535347 85535730 -70094390 + MTD LTR MaLR 1 419 0 5 1237 189 348 26 26 chr4 85535811 85535945 -70094175 - MIRm SINE MIR -97 179 38 5 1237 352 324 20 47 chr4 85536287 85536436 -70093684 + MLT1A0 LTR MaLR 46 190 -175 5 1237 268 322 88 11 chr4 85537097 85537273 -70092847 + MIRb SINE MIR 2 197 -71 5 1237 33605 49 1 3 chr4 85537543 85542992 -70087128 + L1Md_T LINE L1 59 5589 -297 5 1237 8582 28 0 0 chr4 85542992 85543988 -70086132 + L1Md_T LINE L1 5590 6585 0 5 1237 2205 167 82 43 chr4 85544752 85545241 -70084879 - RMER1B Other Other -2 1064 557 5 1237 467 223 109 51 chr4 85545366 85545503 -70084617 + B1_Mur3 SINE Alu 5 149 0 6 1237 1448 75 10 0 chr4 85545505 85545704 -70084416 - L1Md_F LINE L1 -5741 778 578 6 1237 4290 55 2 0 chr4 85545704 85546230 -70083890 + L1_Mus1 LINE L1 6041 6567 0 6 1237 695 134 0 16 chr4 85546257 85546386 -70083734 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 6 1237 197 328 30 0 chr4 85546429 85546496 -70083624 - L2a LINE L2 -16 3410 3342 6 1237 459 307 19 32 chr4 85548012 85548170 -70081950 + RSINE1 SINE B4 3 158 -7 6 1237 224 253 85 37 chr4 85548317 85548399 -70081721 + MIRm SINE MIR 14 99 -177 6 1237 287 305 98 15 chr4 85548460 85548593 -70081527 + MTE2a LTR MaLR 3 146 -233 6 1237 445 292 88 44 chr4 85548653 85548943 -70081177 + MT2A LTR ERVL 187 560 0 6 1237 654 288 102 47 chr4 85549283 85549538 -70080582 + B4A SINE B4 1 269 -23 6 1237 1672 243 55 104 chr4 85549666 85550212 -70079908 - RLTR18 LTR ERVK -4 612 94 7 1237 631 283 27 36 chr4 85550286 85550498 -70079622 + B3A SINE B2 3 203 -13 7 1237 256 304 0 0 chr4 85550498 85550554 -70079566 + (CACG)n Simple_repeat Simple_repeat 3 58 0 7 1237 349 224 13 0 chr4 85550555 85550631 -70079489 + HAL1-3A_ME LINE L1 1976 2052 -806 7 1237 264 312 55 9 chr4 85551570 85551680 -70078440 - RMER12 LTR ERVK -466 856 742 7 1237 456 331 73 16 chr4 85552207 85552453 -70077667 - MER2 DNA MER2_type 0 345 86 7 1237 184 331 22 43 chr4 85553570 85553709 -70076411 - MIR SINE MIR -4 258 123 7 1237 2716 211 10 26 chr4 85553884 85554464 -70075656 - Lx6 LINE L1 -11 7449 6879 7 1237 585 76 0 0 chr4 85554466 85554545 -70075575 + (CCCCCT)n Simple_repeat Simple_repeat 4 82 0 7 1237 782 308 19 9 chr4 85555817 85556030 -70074090 + 7SK RNA RNA 4 218 -113 7 1237 342 80 0 0 chr4 85557104 85557154 -70072966 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1237 424 318 62 68 chr4 85557297 85557459 -70072661 - B4A SINE B4 -117 175 15 8 1237 24 0 0 0 chr4 85558792 85558816 -70071304 + AT_rich Low_complexity Low_complexity 1 24 0 8 1237 1602 251 61 0 chr4 85559265 85559644 -70070476 + MTD LTR MaLR 18 419 0 8 1237 193 367 82 0 chr4 85560119 85560217 -70069903 + MIR SINE MIR 1 106 -156 8 1237 3863 52 34 15 chr4 85560268 85560794 -70069326 - LTRIS2 LTR ERV1 0 564 29 8 1237 226 296 0 0 chr4 85562613 85562667 -70067453 + MIRc SINE MIR 98 151 -117 8 1237 375 244 144 42 chr4 85563003 85563170 -70066950 - MIRb SINE MIR 0 268 85 8 1237 3616 74 78 0 chr4 85563306 85563795 -70066325 + L1_Mus1 LINE L1 6039 6565 -2 8 1237 192 40 0 0 chr4 85564735 85564760 -70065360 + (CTG)n Simple_repeat Simple_repeat 1 25 0 8 1237 183 80 0 0 chr4 85564960 85564985 -70065135 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1237 4961 92 3 3 chr4 85565389 85566076 -70064044 + L1_Mus3 LINE L1 5945 6631 -7 9 1237 423 68 0 0 chr4 85567867 85567926 -70062194 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 9 1237 3473 242 62 55 chr4 85567931 85568286 -70061834 - Lx9 LINE L1 -185 7459 7099 9 1237 1875 215 22 191 chr4 85568286 85569021 -70061099 - RMER19C LTR ERVK 0 611 1 9 1237 3473 242 62 55 chr4 85569021 85569764 -70060356 - Lx9 LINE L1 -546 7098 6353 9 1237 823 178 6 24 chr4 85569882 85570049 -70060071 + B2_Mm2 SINE B2 2 165 -30 9 1237 676 141 52 7 chr4 85570065 85570201 -70059919 - Lx4A LINE L1 0 7058 6917 9 1237 830 228 15 15 chr4 85571049 85571254 -70058866 - B3 SINE B2 -11 205 1 9 1237 37100 47 12 3 chr4 85571279 85577555 -70052565 - L1Md_T LINE L1 0 6582 290 9 1237 181 283 38 0 chr4 85577898 85577951 -70052169 - MIR SINE MIR -3 259 205 9 1237 209 130 0 42 chr4 85578012 85578060 -70052060 + T-rich Low_complexity Low_complexity 4 49 0 1 1237 276 200 0 32 chr4 85578631 85578693 -70051427 - L1M5 LINE L1 -296 5828 5769 1 1237 36 40 0 0 chr4 85578693 85578743 -70051377 + AT_rich Low_complexity Low_complexity 1 50 0 1 1237 296 148 136 0 chr4 85578744 85578832 -70051288 + Tigger7 DNA MER2_type 2286 2385 -106 1 1237 8812 69 28 1 chr4 85579577 85581433 -70048687 - L1Md_F2 LINE L1 -5 6577 4673 1 1237 293 269 30 0 chr4 85581679 85581746 -70048374 + ID4 SINE ID 15 83 0 1 1237 1601 193 244 8 chr4 85581856 85582359 -70047761 + Lx9 LINE L1 7017 7638 -6 1 1237 1534 253 45 8 chr4 85583917 85584411 -70045709 - L1MB7 LINE L1 -16 6168 5657 1 1237 348 24 0 0 chr4 85584680 85584721 -70045399 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1237 211 366 50 0 chr4 85584953 85585054 -70045066 + MIRc SINE MIR 41 146 -122 1 1237 665 325 65 4 chr4 85585074 85585306 -70044814 - B4A SINE B4 -46 246 1 1 1237 203 330 23 138 chr4 85586028 85586158 -70043962 + MIRb SINE MIR 93 207 -61 1 1237 191 354 62 0 chr4 85586525 85586621 -70043499 + MIRb SINE MIR 48 149 -119 1 1237 259 25 24 24 chr4 85586863 85586904 -70043216 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 1 1237 327 244 173 31 chr4 85587361 85587488 -70042632 - L1ME4a LINE L1 -5 6119 5975 1 1237 276 326 88 107 chr4 85587935 85588151 -70041969 + LFSINE_Vert SINE SINE 138 349 -110 1 1237 278 292 167 36 chr4 85589530 85589722 -70040398 + MIRb SINE MIR 21 237 -31 1 1237 984 18 0 0 chr4 85589880 85589994 -70040126 + (GAGAA)n Simple_repeat Simple_repeat 2 115 0 1 1238 370 256 32 110 chr4 85591224 85591378 -70038742 + B1F SINE Alu 1 142 -7 1 1238 469 304 10 58 chr4 85592204 85592410 -70037710 - B3A SINE B2 0 198 3 1 1238 180 0 0 0 chr4 85592498 85592518 -70037602 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1238 1506 148 76 4 chr4 85592770 85593034 -70037086 + Lx3C LINE L1 6692 6974 -2 1 1238 209 33 33 0 chr4 85593036 85593066 -70037054 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1238 256 318 75 60 chr4 85594019 85594153 -70035967 + MIR SINE MIR 31 166 -96 1 1238 232 286 133 0 chr4 85595912 85596010 -70034110 - MIRc SINE MIR -30 238 128 1 1238 566 296 52 61 chr4 85597060 85597116 -70033004 - B3 SINE B2 -6 210 158 1 1238 468 0 0 0 chr4 85597116 85597168 -70032952 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1238 423 0 0 0 chr4 85597168 85597214 -70032906 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1238 566 296 52 61 chr4 85597214 85597248 -70032872 - B3 SINE B2 -59 157 117 1 1238 1350 196 106 62 chr4 85597248 85597606 -70032514 + ORR1D1 LTR MaLR 1 374 0 1 1238 566 296 52 61 chr4 85597606 85597725 -70032395 - B3 SINE B2 -100 116 3 1 1238 194 329 74 62 chr4 85598192 85598354 -70031766 - MER5B DNA MER1_type 0 178 15 1 1238 294 29 0 0 chr4 85598574 85598609 -70031511 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1238 26 50 0 0 chr4 85598644 85598684 -70031436 + AT_rich Low_complexity Low_complexity 1 40 0 1 1238 876 211 36 0 chr4 85598755 85598949 -70031171 + Lx5 LINE L1 6847 7047 -3 1 1238 214 314 56 77 chr4 85598950 85599122 -70030998 + MIR SINE MIR 16 181 -81 1 1238 243 308 124 9 chr4 85599307 85599412 -70030708 - PB1D10 SINE Alu 0 117 1 1 1238 251 175 0 17 chr4 85600311 85600369 -70029751 + CT-rich Low_complexity Low_complexity 1 57 0 1 1238 309 240 58 28 chr4 85600444 85600604 -70029516 - L1MA6 LINE L1 -31 6269 6109 1 1238 1089 278 165 3 chr4 85600791 85601137 -70028983 - MTE-int LTR MaLR -251 1329 928 1 1238 216 0 0 0 chr4 85601159 85601183 -70028937 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1238 560 87 11 0 chr4 85601183 85601275 -70028845 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 1238 255 309 12 0 chr4 85601276 85601360 -70028760 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1238 539 222 62 0 chr4 85601397 85601541 -70028579 + MER57A-int LTR ERV1 5830 5982 -205 1 1238 265 167 15 29 chr4 85601826 85601894 -70028226 + (TTG)n Simple_repeat Simple_repeat 3 69 0 1 1238 215 272 88 5 chr4 85603684 85603784 -70026336 - MIRb SINE MIR -8 260 145 1 1238 288 0 0 0 chr4 85603902 85603934 -70026186 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1238 329 267 58 0 chr4 85604136 85604256 -70025864 + L1MA4A LINE L1 5815 5941 -362 1 1238 201 39 0 0 chr4 85604271 85604297 -70025823 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1238 242 333 17 95 chr4 85606000 85606179 -70023941 - MER5A1 DNA MER1_type 0 166 2 1 1238 1110 183 27 5 chr4 85606450 85606669 -70023451 + URR1A DNA MER1_type 2 225 -1 1 1238 3503 81 14 16 chr4 85607837 85608326 -70021794 - L1_Mus3 LINE L1 0 6638 6151 1 1238 681 85 0 0 chr4 85608326 85608420 -70021700 + L1_Mus3 LINE L1 6052 6145 -493 1 1238 495 0 0 0 chr4 85609110 85609165 -70020955 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1238 7940 30 10 1 chr4 85609165 85610334 -70019786 - L1Md_F3 LINE L1 -21 6563 5386 1 1238 282 259 144 0 chr4 85612343 85612446 -70017674 - PB1D10 SINE Alu 0 120 1 1 1238 2213 169 19 17 chr4 85612877 85613297 -70016823 - MTC LTR MaLR 0 421 1 1 1238 12095 21 0 0 chr4 85613297 85614769 -70015351 + L1Md_T LINE L1 4115 5586 -297 1 1238 7948 55 7 0 chr4 85614769 85615757 -70014363 + L1Md_T LINE L1 5587 6581 -1 1 1238 6231 81 22 1 chr4 85615880 85616774 -70013346 - L1_Mus3 LINE L1 -6 6632 5720 1 1238 539 254 14 58 chr4 85617039 85617177 -70012943 + B4 SINE B4 157 288 -4 1 1238 432 55 0 0 chr4 85617197 85617252 -70012868 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1238 210 242 0 31 chr4 85618119 85618183 -70011937 + (CCCCAA)n Simple_repeat Simple_repeat 3 64 0 1 1238 240 368 6 38 chr4 85618440 85618598 -70011522 - L4 LINE RTE -1228 801 649 1 1238 244 174 42 28 chr4 85618715 85618786 -70011334 - Lx6 LINE L1 -16 7444 7373 1 1238 450 0 0 0 chr4 85618948 85618998 -70011122 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 1 1238 203 88 29 0 chr4 85620703 85620737 -70009383 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1238 230 270 97 49 chr4 85621305 85621449 -70008671 + MLT1L LTR MaLR 378 528 -82 1 1238 564 53 0 0 chr4 85621873 85621949 -70008171 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1238 3780 121 48 9 chr4 85622807 85623440 -70006680 + Lx LINE L1 5938 6594 -60 1 1238 180 0 0 0 chr4 85623468 85623488 -70006632 + (TAAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1238 303 198 58 196 chr4 85624705 85624750 -70005370 - MLT1D LTR MaLR -9 496 462 1 1238 894 159 7 7 chr4 85624750 85624896 -70005224 - B1_Mus2 SINE Alu 0 147 2 1 1238 303 198 58 196 chr4 85624896 85624988 -70005132 - MLT1D LTR MaLR -44 461 378 1 1238 276 294 118 50 chr4 85625057 85625218 -70004902 - MLT1D LTR MaLR -270 235 64 1 1238 241 336 54 15 chr4 85625696 85625826 -70004294 - Kanga1 DNA Tc2 -1607 138 4 1 1238 327 49 0 0 chr4 85626546 85626587 -70003533 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1238 200 288 51 64 chr4 85626900 85626978 -70003142 - MIRm SINE MIR 0 276 200 1 1238 275 152 0 33 chr4 85626987 85627048 -70003072 + GA-rich Low_complexity Low_complexity 6 64 0 1 1238 252 279 27 71 chr4 85627115 85627227 -70002893 + ORR1B1-int LTR MaLR 1232 1338 -171 1 1238 475 258 68 8 chr4 85627863 85627996 -70002124 - Lx8 LINE L1 -1128 6345 6205 1 1238 359 178 40 0 chr4 85628002 85628103 -70002017 + CT-rich Low_complexity Low_complexity 4 108 0 1 1238 191 88 0 29 chr4 85628248 85628283 -70001837 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1 1238 255 253 101 0 chr4 85628287 85628366 -70001754 - Arthur1B DNA Tip100 -1120 105 19 1 1238 1027 113 0 0 chr4 85629601 85629742 -70000378 + B1_Mus1 SINE Alu 2 142 -6 1 1238 511 142 6 51 chr4 85629742 85629898 -70000222 + (TAAA)n Simple_repeat Simple_repeat 1 149 0 1 1238 1975 274 140 86 chr4 85629924 85630740 -69999380 - RMER13A LTR ERVK 0 860 1 1 1238 667 243 81 0 chr4 85633448 85633596 -69996524 - B3A SINE B2 -30 168 9 1 1238 508 319 138 20 chr4 85634370 85634565 -69995555 + B4A SINE B4 3 220 -72 1 1238 463 251 17 38 chr4 85634798 85634992 -69995128 - L1MA5 LINE L1 0 6300 6115 1 1238 262 222 144 0 chr4 85635102 85635192 -69994928 - L1MA5 LINE L1 -272 6019 5917 1 1238 22 35 0 0 chr4 85635720 85635749 -69994371 + AT_rich Low_complexity Low_complexity 1 29 0 1 1238 270 81 0 0 chr4 85635886 85635923 -69994197 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1238 251 200 16 16 chr4 85635939 85636000 -69994120 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1238 591 112 0 0 chr4 85636000 85636089 -69994031 + (GGGAGA)n Simple_repeat Simple_repeat 3 91 0 1 1238 590 0 14 0 chr4 85636538 85636608 -69993512 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1238 1674 269 44 22 chr4 85636614 85637157 -69992963 - Lx5 LINE L1 -17 7033 6479 1 1238 225 262 0 0 chr4 85637153 85637214 -69992906 - Lx5 LINE L1 -686 6364 6304 1 1238 987 235 57 15 chr4 85637214 85637478 -69992642 + Lx5 LINE L1 6046 6320 -730 1 1238 326 0 68 0 chr4 85637780 85637824 -69992296 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1238 618 51 0 0 chr4 85638235 85638313 -69991807 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 1238 360 0 0 0 chr4 85638654 85638694 -69991426 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1238 24 0 0 0 chr4 85639343 85639367 -69990753 + AT_rich Low_complexity Low_complexity 1 24 0 1 1238 684 93 0 0 chr4 85639576 85639673 -69990447 + (TGGA)n Simple_repeat Simple_repeat 4 100 0 1 1238 1197 299 117 38 chr4 85639701 85640982 -69989138 + L1MEc LINE L1 45 1427 -4973 1 1238 435 194 0 0 chr4 85641361 85641459 -69988661 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1238 1323 295 94 42 chr4 85641575 85641933 -69988187 - Lx8 LINE L1 -1553 5920 5514 1 1238 2915 156 58 28 chr4 85641933 85642499 -69987621 + RMER4B LTR ERVK 3 585 0 1 1238 1323 293 92 44 chr4 85642499 85642996 -69987124 - Lx8 LINE L1 -334 5513 4986 1 1238 318 253 14 0 chr4 85643042 85643157 -69986963 + L1MEc LINE L1 1650 1816 -4523 1 1238 856 304 130 45 chr4 85643207 85644602 -69985518 + L1MEc LINE L1 2885 4397 -1922 1 1238 805 249 40 20 chr4 85644661 85644862 -69985258 + B3 SINE B2 1 205 -11 1 1238 20598 7 1 1 chr4 85644924 85648789 -69981331 + L1Md_A LINE L1 1 3684 -2199 2 1238 230 158 34 34 chr4 85648935 85648994 -69981126 + L1M4 LINE L1 4283 4341 -1805 2 1238 203 156 78 0 chr4 85649392 85649482 -69980638 + (CAGA)n Simple_repeat Simple_repeat 2 98 0 2 1238 238 310 100 78 chr4 85649486 85649846 -69980274 + L1MEc LINE L1 4957 5324 -995 1 1238 307 298 41 64 chr4 85650082 85650301 -69979819 + L1ME1 LINE L1 5865 6078 -101 2 1238 216 0 0 0 chr4 85651787 85651811 -69978309 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1238 387 0 0 0 chr4 85651811 85651853 -69978267 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1238 227 385 12 0 chr4 85652445 85652528 -69977592 + L3b LINE CR1 342 425 -57 2 1238 198 0 0 0 chr4 85652925 85652947 -69977173 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1238 431 311 50 96 chr4 85653104 85653385 -69976735 + ORR1E LTR MaLR 90 357 -2 2 1238 384 236 57 0 chr4 85653608 85653714 -69976406 - PB1D7 SINE Alu -8 112 1 2 1238 366 282 45 0 chr4 85654889 85654999 -69975121 + PB1D9 SINE Alu 1 115 -5 2 1238 384 22 0 0 chr4 85655008 85655053 -69975067 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1238 321 167 39 19 chr4 85655053 85655109 -69975011 + polypurine Low_complexity Low_complexity 6 61 0 2 1238 1019 89 0 58 chr4 85655109 85655300 -69974820 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1238 321 167 39 19 chr4 85655300 85655347 -69974773 + polypurine Low_complexity Low_complexity 62 111 0 2 1238 895 155 11 0 chr4 85655332 85655506 -69974614 + GA-rich Low_complexity Low_complexity 4 179 0 2 1238 630 223 0 0 chr4 85655805 85655917 -69974203 - PB1D9 SINE Alu -8 112 1 2 1238 537 208 12 6 chr4 85656913 85657082 -69973038 + GA-rich Low_complexity Low_complexity 1 170 0 2 1238 343 311 71 19 chr4 85658247 85658401 -69971719 - MER5A1 DNA MER1_type -4 162 1 2 1238 363 391 45 14 chr4 85659610 85659833 -69970287 - L3 LINE CR1 -3 4486 4257 2 1238 315 0 0 0 chr4 85661404 85661439 -69968681 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1238 1214 109 36 10 chr4 85662464 85662659 -69967461 + Lx3_Mus LINE L1 6704 6903 -106 2 1238 261 57 0 0 chr4 85662670 85662705 -69967415 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 2 1238 542 323 10 11 chr4 85663043 85663206 -69966914 + ID_B1 SINE B4 90 255 -37 2 1238 204 337 129 44 chr4 85664087 85664382 -69965738 + L2 LINE L2 1847 2166 -1253 2 1238 730 133 19 19 chr4 85665166 85665327 -69964793 + CT-rich Low_complexity Low_complexity 5 165 0 2 1238 203 318 0 0 chr4 85665950 85666016 -69964104 + GA-rich Low_complexity Low_complexity 1 66 0 2 1238 222 37 0 0 chr4 85666031 85666058 -69964062 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 1238 1572 114 31 0 chr4 85666065 85666320 -69963800 - Lx3_Mus LINE L1 -8 7001 6739 2 1238 588 29 0 0 chr4 85666919 85666989 -69963131 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 2 1238 584 74 17 0 chr4 85667165 85667261 -69962859 - L1_Mus4 LINE L1 -163 6473 6398 2 1238 194 0 0 37 chr4 85667373 85667400 -69962720 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1238 420 211 133 2 chr4 85668548 85668738 -69961382 + L1MB7 LINE L1 5795 6012 -162 2 1238 766 276 74 56 chr4 85669611 85669895 -69960225 - B4A SINE B4 -3 289 1 2 1238 542 104 10 0 chr4 85670076 85670172 -69959948 + (GA)n Simple_repeat Simple_repeat 2 98 0 2 1238 231 36 0 0 chr4 85670373 85670401 -69959719 + (GGA)n Simple_repeat Simple_repeat 3 30 0 2 1238 188 146 0 47 chr4 85670579 85670622 -69959498 + CT-rich Low_complexity Low_complexity 3 43 0 2 1238 648 281 71 0 chr4 85671729 85671925 -69958195 + B3 SINE B2 1 210 -6 2 1238 238 356 42 21 chr4 85672312 85672511 -69957609 - MIRc SINE MIR -37 231 28 2 1238 365 340 67 10 chr4 85672912 85673105 -69957015 - MIR SINE MIR -16 246 43 2 1238 225 0 0 0 chr4 85673323 85673348 -69956772 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1238 291 259 193 69 chr4 85673363 85673508 -69956612 + RSINE1 SINE B4 3 165 0 2 1238 880 299 98 8 chr4 85673687 85673953 -69956167 - B4A SINE B4 0 292 3 2 1238 711 302 146 20 chr4 85674149 85674402 -69955718 + B4A SINE B4 8 292 0 2 1238 443 118 13 0 chr4 85674453 85674529 -69955591 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1238 231 253 147 0 chr4 85674821 85674896 -69955224 - PB1 SINE Alu -4 123 38 2 1238 260 271 149 37 chr4 85674919 85675053 -69955067 - MIR SINE MIR -118 150 2 2 1238 360 111 0 0 chr4 85675922 85675976 -69954144 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1238 237 303 22 0 chr4 85677392 85677481 -69952639 - Charlie2a DNA MER1_type -67 2794 2704 2 1238 237 188 0 40 chr4 85677646 85677696 -69952424 - Charlie2a DNA MER1_type -389 2472 2425 2 1238 25 0 0 0 chr4 85678218 85678243 -69951877 + AT_rich Low_complexity Low_complexity 1 25 0 2 1238 320 333 107 5 chr4 85678243 85678439 -69951681 - Charlie2a DNA MER1_type -968 1893 1678 2 1238 1300 270 53 18 chr4 85678478 85679023 -69951097 + L1_Mur2 LINE L1 5254 5798 -381 2 1238 321 296 94 6 chr4 85679025 85679195 -69950925 + L1ME1 LINE L1 5995 6179 0 2 1238 354 23 0 0 chr4 85679389 85679432 -69950688 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1238 432 0 0 0 chr4 85679432 85679480 -69950640 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1238 368 358 36 36 chr4 85679748 85679916 -69950204 - Charlie2a DNA MER1_type -2265 596 429 2 1238 465 246 0 145 chr4 85679921 85680059 -69950061 + B3A SINE B2 7 124 -74 2 1238 1791 123 155 25 chr4 85680085 85680452 -69949668 - RLTR9F LTR ERVK 0 415 1 2 1238 308 276 112 19 chr4 85680638 85680745 -69949375 - Charlie2a DNA MER1_type -2476 385 269 2 1238 872 284 58 27 chr4 85680829 85681090 -69949030 + B4A SINE B4 24 292 0 2 1238 321 118 0 0 chr4 85681129 85681180 -69948940 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1238 459 0 0 0 chr4 85681180 85681230 -69948890 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1238 482 217 19 6 chr4 85682882 85683044 -69947076 + CT-rich Low_complexity Low_complexity 2 165 0 2 1238 640 262 126 67 chr4 85683495 85683749 -69946371 - L3b LINE CR1 -209 273 5 2 1238 35 24 0 0 chr4 85687766 85687808 -69942312 + AT_rich Low_complexity Low_complexity 1 42 0 2 1238 301 274 25 8 chr4 85687942 85688060 -69942060 - L1MA8 LINE L1 -3 6288 6169 2 1238 313 217 108 0 chr4 85688908 85689028 -69941092 - L1MB3 LINE L1 -8 6175 6043 2 1238 202 62 62 0 chr4 85689180 85689212 -69940908 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1238 254 22 0 0 chr4 85689251 85689296 -69940824 - L1_Mus4 LINE L1 -2 6634 6590 2 1238 614 120 69 10 chr4 85689297 85689398 -69940722 - U6 snRNA snRNA 0 107 1 2 1238 582 274 28 0 chr4 85689414 85689593 -69940527 - L1MB3 LINE L1 -409 5774 5591 2 1238 414 0 0 0 chr4 85690254 85690300 -69939820 + (TTG)n Simple_repeat Simple_repeat 3 48 0 2 1238 240 143 0 0 chr4 85690302 85690344 -69939776 + (CTG)n Simple_repeat Simple_repeat 1 42 0 2 1238 183 362 62 0 chr4 85690518 85690598 -69939522 - L4 LINE RTE -208 1821 1737 2 1238 229 354 107 24 chr4 85691003 85691171 -69938949 - MLT1J LTR MaLR -197 315 134 2 1238 328 229 45 9 chr4 85691597 85691707 -69938413 + L1MA8 LINE L1 6174 6287 -4 2 1238 450 0 0 0 chr4 85692332 85692382 -69937738 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1238 383 237 29 29 chr4 85692382 85692521 -69937599 + L1MA8 LINE L1 6148 6286 -5 2 1238 1056 121 27 58 chr4 85693329 85693543 -69936577 + URR1B DNA MER1_type 1 225 0 2 1238 387 0 0 0 chr4 85694010 85694053 -69936067 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1238 414 0 0 0 chr4 85694514 85694560 -69935560 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1238 259 302 170 26 chr4 85695491 85695644 -69934476 - MLT1N2 LTR MaLR -298 264 90 2 1238 259 380 0 52 chr4 85695514 85695650 -69934470 - LTR33B LTR ERVL -309 194 66 2 1238 209 250 171 48 chr4 85696977 85697082 -69933038 + MIRc SINE MIR 14 131 -137 2 1238 198 0 0 0 chr4 85697678 85697700 -69932420 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1238 537 110 0 0 chr4 85697700 85697800 -69932320 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 1238 1628 68 5 13 chr4 85698108 85698332 -69931788 + L1_Mus1 LINE L1 6346 6567 0 2 1238 186 43 0 0 chr4 85699793 85699816 -69930304 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 2 1238 324 0 0 0 chr4 85700084 85700120 -69930000 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1238 230 281 61 20 chr4 85701874 85701972 -69928148 - MIRb SINE MIR -35 233 132 2 1238 501 47 0 0 chr4 85704735 85704799 -69925321 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1238 350 405 112 26 chr4 85705433 85705780 -69924340 + MLT1J2 LTR MaLR 33 409 -39 2 1238 327 34 32 48 chr4 85706330 85706392 -69923728 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 2 1238 290 211 138 68 chr4 85706453 85706590 -69923530 - MLT1A1 LTR MaLR -2 406 227 2 1238 217 306 48 16 chr4 85706937 85707000 -69923120 - B4A SINE B4 -191 101 37 2 1238 210 37 0 0 chr4 85708875 85708902 -69921218 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1238 364 250 0 0 chr4 85710045 85710125 -69919995 - ID4_ SINE ID -1 82 3 2 1238 229 196 20 0 chr4 85710209 85710260 -69919860 - Charlie18a DNA MER1_type -10 332 281 2 1238 26 64 0 0 chr4 85710297 85710344 -69919776 + AT_rich Low_complexity Low_complexity 1 47 0 2 1238 408 350 11 43 chr4 85712317 85712502 -69917618 + MER104 DNA Tc2 1 179 -2 2 1238 210 158 0 0 chr4 85712611 85712649 -69917471 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1238 453 76 0 0 chr4 85717116 85717182 -69912938 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1238 497 266 59 65 chr4 85718468 85718621 -69911499 - Charlie4z DNA MER1_type 0 167 16 2 1238 736 88 0 17 chr4 85720043 85720159 -69909961 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 2 1238 234 222 0 0 chr4 85720159 85720213 -69909907 + G-rich Low_complexity Low_complexity 4 57 0 3 1238 926 138 0 22 chr4 85720224 85720452 -69909668 + GA-rich Low_complexity Low_complexity 1 223 0 3 1239 270 0 0 0 chr4 85721614 85721644 -69908476 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1239 530 82 0 12 chr4 85721644 85721729 -69908391 + (TA)n Simple_repeat Simple_repeat 2 86 0 3 1239 377 318 23 13 chr4 85722378 85722517 -69907603 + B1F SINE Alu 1 131 -16 3 1239 941 90 20 7 chr4 85722956 85723102 -69907018 - L1_Mus1 LINE L1 0 6567 6420 3 1239 1380 276 128 15 chr4 85725031 85725576 -69904544 - Lx8 LINE L1 -3 7470 6864 3 1239 16711 74 15 24 chr4 85726039 85728774 -69901346 + Lx3_Mus LINE L1 3418 6050 -959 3 1239 213 39 0 0 chr4 85728774 85728800 -69901320 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 3 1239 8473 95 23 72 chr4 85728800 85729702 -69900418 + Lx3_Mus LINE L1 6051 6966 -43 3 1239 710 161 0 30 chr4 85730780 85730914 -69899206 + URR1B DNA MER1_type 96 225 0 3 1239 221 365 0 111 chr4 85731329 85731446 -69898674 - AluG_3 SINE Alu -89 222 1 3 1239 1269 251 40 12 chr4 85732013 85732433 -69897687 - L1MB3 LINE L1 -31 6152 5721 3 1239 185 318 56 11 chr4 85732443 85732532 -69897588 - MIR SINE MIR -60 202 110 3 1239 529 61 24 0 chr4 85732767 85732849 -69897271 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1239 1071 301 47 16 chr4 85734991 85735564 -69894556 - L1_Mur3 LINE L1 -1746 4134 3544 3 1239 228 279 49 0 chr4 85735949 85736010 -69894110 - ID SINE ID -153 71 8 3 1239 296 286 35 85 chr4 85736204 85736403 -69893717 - L1_Mur1 LINE L1 -4128 1758 1570 3 1239 1881 230 14 32 chr4 85736410 85736850 -69893270 + Lx6 LINE L1 7025 7456 -4 3 1239 206 238 0 0 chr4 85739210 85739252 -69890868 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 3 1239 477 34 0 0 chr4 85740571 85740630 -69889490 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1239 401 42 41 27 chr4 85742215 85742288 -69887832 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 3 1239 242 224 0 0 chr4 85743412 85743461 -69886659 - L2a LINE L2 0 3426 3378 3 1239 2737 115 26 39 chr4 85744142 85744604 -69885516 + RMER6B LTR ERVK 1 456 -5 3 1239 1183 305 64 2 chr4 85744606 85745122 -69884998 - L1MB1 LINE L1 -99 6069 5522 3 1239 671 267 99 55 chr4 85745143 85745358 -69884762 + L1MA4 LINE L1 5526 5775 -525 3 1239 186 43 0 0 chr4 85745358 85745381 -69884739 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 3 1239 671 267 99 55 chr4 85745381 85745530 -69884590 + L1MA4 LINE L1 5776 5906 -394 3 1239 189 0 0 0 chr4 85745556 85745577 -69884543 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1239 207 211 0 0 chr4 85745831 85745869 -69884251 + (TATG)n Simple_repeat Simple_repeat 4 41 0 3 1239 620 297 47 40 chr4 85745879 85746156 -69883964 - B4A SINE B4 -10 282 4 3 1239 2305 270 100 22 chr4 85746173 85747618 -69882502 - L1MB1 LINE L1 -745 5423 3861 3 1239 403 311 53 23 chr4 85747622 85747793 -69882327 + MER5B DNA MER1_type 2 177 -1 3 1239 758 304 71 57 chr4 85748426 85748792 -69881328 + Lx8 LINE L1 7095 7465 -8 3 1239 305 214 0 18 chr4 85749395 85749452 -69880668 - ID4 SINE ID -26 57 2 3 1239 323 255 168 40 chr4 85750090 85750287 -69879833 - HAL1-3A_ME LINE L1 -416 2442 2285 3 1239 359 163 53 23 chr4 85751716 85751848 -69878272 + CT-rich Low_complexity Low_complexity 4 139 0 3 1239 1687 191 63 26 chr4 85753133 85753514 -69876606 - RMER13B LTR ERVK -130 778 384 3 1239 766 146 6 38 chr4 85753525 85753682 -69876438 - L1Md_F3 LINE L1 0 6584 6433 3 1239 3666 63 6 0 chr4 85753682 85754172 -69875948 + L1_Mus1 LINE L1 5836 6328 -239 3 1239 2193 152 10 47 chr4 85754172 85754579 -69875541 - RMER13B LTR ERVK -516 392 1 3 1239 345 238 147 38 chr4 85755109 85755266 -69874854 + MIRb SINE MIR 37 210 -58 3 1239 285 254 141 0 chr4 85755340 85755411 -69874709 + ID4 SINE ID 3 83 0 3 1239 214 106 0 41 chr4 85755411 85755460 -69874660 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1239 204 214 95 0 chr4 85755906 85755948 -69874172 + MIRc SINE MIR 112 157 -111 3 1239 439 341 0 22 chr4 85756173 85756356 -69873764 + L1M5 LINE L1 5504 5682 -442 3 1239 212 296 74 0 chr4 85756532 85756586 -69873534 + RSINE1 SINE B4 3 60 -105 3 1239 259 323 29 58 chr4 85757122 85757260 -69872860 - L2c LINE L2 -1 3386 3253 3 1239 535 210 45 68 chr4 85758031 85758164 -69871956 - B1_Mur1 SINE Alu -18 131 2 3 1239 1006 215 19 24 chr4 85758418 85758628 -69871492 + B3 SINE B2 5 213 -3 3 1239 300 173 40 0 chr4 85758638 85758713 -69871407 - Lx5 LINE L1 0 7050 6973 3 1239 273 324 84 19 chr4 85758815 85758922 -69871198 - MLT1A1 LTR MaLR -25 340 227 3 1239 278 258 78 49 chr4 85758945 85759047 -69871073 - MLT1A1 LTR MaLR -289 119 15 3 1239 263 283 0 0 chr4 85759156 85759202 -69870918 + ID4_ SINE ID 32 77 -6 3 1239 21 36 0 0 chr4 85760020 85760048 -69870072 + AT_rich Low_complexity Low_complexity 1 28 0 3 1239 401 0 0 20 chr4 85760406 85760456 -69869664 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 3 1239 572 253 81 46 chr4 85760786 85760960 -69869160 + B3A SINE B2 1 180 -18 3 1239 781 293 49 36 chr4 85761085 85761450 -69868670 + ORR1D2 LTR MaLR 1 370 0 3 1239 252 229 41 41 chr4 85762025 85762098 -69868022 + ID4_ SINE ID 5 77 -6 3 1239 193 327 57 47 chr4 85762836 85762942 -69867178 + MIR3 SINE MIR 86 192 -16 3 1239 2019 176 60 5 chr4 85764065 85764464 -69865656 - MTC LTR MaLR 0 421 1 3 1239 751 296 48 29 chr4 85764465 85764737 -69865383 + MER119 DNA MER1_type 285 561 -22 3 1239 413 281 107 46 chr4 85764863 85765143 -69864977 - L2a LINE L2 -4 3422 3126 3 1239 838 152 258 0 chr4 85765778 85765956 -69864164 + URR1A DNA MER1_type 2 225 -1 3 1239 202 132 38 0 chr4 85766435 85766488 -69863632 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1239 23 0 0 0 chr4 85766703 85766726 -69863394 + AT_rich Low_complexity Low_complexity 1 23 0 3 1239 318 308 151 50 chr4 85766903 85767122 -69862998 + MLT1B LTR MaLR 15 255 -135 3 1239 242 193 18 0 chr4 85767122 85767179 -69862941 + GA-rich Low_complexity Low_complexity 6 63 0 3 1239 360 318 93 20 chr4 85767187 85767338 -69862782 + MLT1B LTR MaLR 219 380 -10 3 1239 435 288 43 43 chr4 85767380 85767518 -69862602 - B1F2 SINE Alu -7 142 5 3 1239 2146 262 39 32 chr4 85772576 85773191 -69856929 - MER82 DNA MER2_type -33 620 2 3 1239 279 314 15 99 chr4 85773625 85773756 -69856364 + MLT1E LTR MaLR 12 131 -496 3 1239 261 0 0 0 chr4 85773760 85773789 -69856331 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 1239 366 340 108 49 chr4 85773789 85774168 -69855952 + MLT1E LTR MaLR 199 651 -2 3 1239 27 29 0 0 chr4 85774202 85774236 -69855884 + AT_rich Low_complexity Low_complexity 1 34 0 3 1239 345 308 70 6 chr4 85774237 85774394 -69855726 + L1MEe LINE L1 647 813 -4041 3 1239 732 42 0 0 chr4 85774613 85774709 -69855411 + (TTTTA)n Simple_repeat Simple_repeat 2 97 0 3 1239 1067 163 40 15 chr4 85774709 85774901 -69855219 - B3 SINE B2 -16 200 3 3 1239 870 287 55 4 chr4 85775951 85776224 -69853896 + B4A SINE B4 1 287 -5 3 1239 373 293 36 77 chr4 85776507 85776703 -69853417 - L1MEe LINE L1 -3703 1151 964 3 1239 404 19 0 19 chr4 85776926 85776980 -69853140 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1239 450 0 0 0 chr4 85777300 85777350 -69852770 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1239 491 275 127 34 chr4 85777378 85777615 -69852505 - B4A SINE B4 -20 272 14 3 1239 309 363 83 51 chr4 85777634 85777910 -69852210 - L1MEe LINE L1 -4488 366 82 3 1239 326 328 34 17 chr4 85778334 85778511 -69851609 + L1M2 LINE L1 2370 2549 -3594 3 1239 21 57 0 0 chr4 85778579 85778614 -69851506 + AT_rich Low_complexity Low_complexity 1 35 0 3 1239 1680 301 78 35 chr4 85778627 85779456 -69850664 + Lx8 LINE L1 2605 3461 -2419 3 1239 1263 94 0 0 chr4 85779456 85779636 -69850484 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1239 1680 301 78 35 chr4 85779636 85780016 -69850104 + Lx8 LINE L1 3462 3865 -2015 3 1239 800 269 127 28 chr4 85780051 85780494 -69849626 + Lx8 LINE L1 5387 5905 -1568 3 1239 378 0 0 0 chr4 85780901 85780943 -69849177 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1239 434 303 109 56 chr4 85781070 85781374 -69848746 - L1MC1 LINE L1 -70 6263 5944 3 1239 2034 117 8 85 chr4 85782388 85782742 -69847378 + ORR1A2 LTR MaLR 1 327 0 3 1239 285 100 0 0 chr4 85783972 85784022 -69846098 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1239 218 200 0 20 chr4 85784128 85784179 -69845941 + G-rich Low_complexity Low_complexity 3 52 0 3 1239 385 312 103 72 chr4 85786260 85786619 -69843501 - L2a LINE L2 -94 3332 2963 3 1239 612 252 26 13 chr4 85786894 85787047 -69843073 + MER5A DNA MER1_type 30 184 -5 3 1239 1199 188 19 0 chr4 85787852 85788059 -69842061 + B3 SINE B2 1 211 -5 3 1239 732 203 14 21 chr4 85788212 85788353 -69841767 + ID_B1 SINE B4 78 217 -7 3 1239 22 56 0 0 chr4 85788361 85788397 -69841723 + AT_rich Low_complexity Low_complexity 1 36 0 3 1239 2945 63 5 5 chr4 85788886 85789270 -69840850 + L1Md_F2 LINE L1 6187 6570 -12 3 1239 210 37 16 129 chr4 85789438 85789500 -69840620 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1239 402 21 0 0 chr4 85789708 85789755 -69840365 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1239 33118 89 14 13 chr4 85789775 85796124 -69833996 - L1Md_F2 LINE L1 -13 6569 208 3 1239 700 227 57 0 chr4 85796672 85796848 -69833272 + MER121 Unknown Unknown 72 257 -155 3 1239 1151 278 99 10 chr4 85798711 85799096 -69831024 + MTD LTR MaLR 1 419 0 3 1239 545 158 7 0 chr4 85799275 85799414 -69830706 + CT-rich Low_complexity Low_complexity 3 142 0 3 1239 198 0 0 0 chr4 85799429 85799451 -69830669 + (CAT)n Simple_repeat Simple_repeat 3 24 0 3 1239 3287 252 41 94 chr4 85799461 85800743 -69829377 - Lx9 LINE L1 -171 7473 6260 3 1239 967 86 0 14 chr4 85800803 85800945 -69829175 + L1Md_F2 LINE L1 6429 6568 -14 3 1239 23 0 0 0 chr4 85801216 85801239 -69828881 + AT_rich Low_complexity Low_complexity 1 23 0 4 1239 400 309 32 0 chr4 85801665 85801759 -69828361 + B1F SINE Alu 1 97 -52 4 1239 1032 244 0 0 chr4 85801834 85802027 -69828093 + B3 SINE B2 16 208 -8 4 1239 474 18 0 0 chr4 85803179 85803234 -69826886 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1239 447 277 87 43 chr4 85804082 85804267 -69825853 + B3A SINE B2 1 193 -5 4 1239 221 340 11 54 chr4 85804467 85804570 -69825550 - MIR SINE MIR -169 107 8 4 1239 917 160 157 50 chr4 85804850 85805048 -69825072 - URR1B DNA MER1_type 0 225 7 4 1239 1398 56 0 0 chr4 85806314 85806494 -69823626 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1239 203 308 0 0 chr4 85806570 85806622 -69823498 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1239 4370 155 61 46 chr4 85806624 85807235 -69822885 + RLTR25A LTR ERVK 86 714 -389 4 1239 1225 48 0 0 chr4 85807235 85807382 -69822738 + B1_Mus2 SINE Alu 1 147 0 4 1239 4370 155 61 46 chr4 85807382 85807572 -69822548 + RLTR25A LTR ERVK 715 896 -207 4 1239 603 0 0 0 chr4 85807572 85807639 -69822481 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 1239 4370 171 82 86 chr4 85807639 85807790 -69822330 + RLTR25A LTR ERVK 820 1027 -1 4 1239 195 321 110 0 chr4 85808044 85808153 -69821967 + MIRb SINE MIR 34 154 -114 4 1239 327 232 29 0 chr4 85808329 85808398 -69821722 + ID4_ SINE ID 7 77 -6 4 1239 281 256 37 37 chr4 85808398 85808410 -69821710 + ID SINE ID 7 87 -137 4 1239 183 42 0 0 chr4 85808877 85808901 -69821219 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 4 1239 491 175 62 0 chr4 85809139 85809236 -69820884 + Lx7 LINE L1 6377 6479 -1217 4 1239 8153 183 191 91 chr4 85809231 85811834 -69818286 - Lx7 LINE L1 -454 7242 3800 4 1239 244 250 117 63 chr4 85811834 85811945 -69818175 - RLTR20C LTR ERVK -325 209 93 4 1239 8153 183 191 91 chr4 85811945 85812634 -69817486 - Lx7 LINE L1 -454 3799 2886 4 1239 1101 65 0 0 chr4 85812634 85812772 -69817348 + B1_Mus1 SINE Alu 1 138 -10 4 1239 245 29 0 29 chr4 85812772 85812807 -69817313 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1239 8153 159 277 142 chr4 85812807 85813024 -69817096 - Lx7 LINE L1 -2995 2885 2654 4 1239 405 0 0 0 chr4 85813024 85813069 -69817051 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1239 8153 159 277 142 chr4 85813069 85814041 -69816079 - Lx7 LINE L1 -3227 2653 2060 4 1239 324 0 0 0 chr4 85814041 85814077 -69816043 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1239 8153 186 133 68 chr4 85814077 85816084 -69814036 - Lx7 LINE L1 -3821 2059 154 4 1239 286 200 138 0 chr4 85816087 85816152 -69813968 - Lx7 LINE L1 -7501 227 154 4 1239 960 209 113 30 chr4 85816155 85816554 -69813566 - L1_Mur3 LINE L1 -7259 453 5 4 1239 293 270 56 0 chr4 85816579 85816668 -69813452 + MIRb SINE MIR 123 216 -52 4 1239 351 287 21 11 chr4 85818281 85818376 -69811744 - MLT1B LTR MaLR -39 351 256 4 1239 207 0 0 0 chr4 85818530 85818553 -69811567 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1239 310 344 118 16 chr4 85819329 85819456 -69810664 - B1F SINE Alu -9 140 1 4 1239 489 241 51 8 chr4 85819468 85819585 -69810535 - B1F1 SINE Alu -19 130 9 4 1239 1147 351 65 24 chr4 85820257 85820765 -69809355 - MER77 LTR ERVL -26 581 53 4 1239 584 265 14 23 chr4 85821016 85821236 -69808884 + L1MB7 LINE L1 5558 5775 -403 4 1239 579 29 0 0 chr4 85821326 85821395 -69808725 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1239 267 295 8 118 chr4 85821582 85821709 -69808411 - MLT1A LTR MaLR -228 146 34 4 1239 355 313 36 99 chr4 85821711 85821934 -69808186 + L1MB7 LINE L1 5891 6099 -85 4 1239 21 36 0 0 chr4 85822486 85822514 -69807606 + AT_rich Low_complexity Low_complexity 1 28 0 4 1239 355 329 60 38 chr4 85823661 85823830 -69806290 - MIR3 SINE MIR -9 199 28 4 1239 22 0 0 0 chr4 85824001 85824023 -69806097 + AT_rich Low_complexity Low_complexity 1 22 0 4 1239 219 263 0 0 chr4 85824695 85824752 -69805368 + T-rich Low_complexity Low_complexity 1 57 0 4 1239 360 294 67 40 chr4 85824800 85824949 -69805171 - HAL1-3A_ME LINE L1 -420 2438 2286 4 1239 23 33 0 0 chr4 85825734 85825764 -69804356 + AT_rich Low_complexity Low_complexity 1 30 0 4 1239 1155 74 0 0 chr4 85826099 85826247 -69803873 + B1_Mus1 SINE Alu 1 148 0 4 1239 464 138 23 0 chr4 85826248 85826335 -69803785 + GA-rich Low_complexity Low_complexity 2 90 0 4 1239 23 33 0 0 chr4 85826617 85826647 -69803473 + AT_rich Low_complexity Low_complexity 1 30 0 4 1239 723 252 5 114 chr4 85826667 85826886 -69803234 + RMER30 DNA MER1_type 7 201 -1 4 1239 335 371 75 19 chr4 85828484 85828685 -69801435 - MIRb SINE MIR -51 217 2 4 1239 975 285 74 67 chr4 85828943 85829548 -69800572 - L1MB3 LINE L1 -1 6182 5576 4 1239 1394 66 0 22 chr4 85830964 85831149 -69798971 - B2_Mm2 SINE B2 -14 181 1 4 1239 1201 112 17 0 chr4 85832102 85832280 -69797840 + B2_Mm2 SINE B2 1 181 -14 4 1239 21 36 0 0 chr4 85832361 85832389 -69797731 + AT_rich Low_complexity Low_complexity 1 28 0 4 1239 433 254 114 47 chr4 85832396 85832545 -69797575 - RLTR14 LTR ERV1 0 382 224 4 1239 21 36 0 0 chr4 85834756 85834784 -69795336 + AT_rich Low_complexity Low_complexity 1 28 0 4 1239 455 253 196 73 chr4 85836672 85836932 -69793188 + B4A SINE B4 1 292 0 4 1239 180 0 0 0 chr4 85837087 85837107 -69793013 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1239 204 361 90 45 chr4 85837911 85838111 -69792009 - L2a LINE L2 -273 3153 2945 4 1239 594 0 0 0 chr4 85838325 85838391 -69791729 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1239 315 282 9 43 chr4 85839053 85839168 -69790952 - Charlie19a DNA Charlie -34 352 242 4 1239 262 420 25 0 chr4 85839238 85839357 -69790763 - Charlie19a DNA Charlie -239 147 26 4 1239 221 158 0 26 chr4 85839481 85839520 -69790600 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1239 213 159 0 22 chr4 85839517 85839562 -69790558 + (TTG)n Simple_repeat Simple_repeat 1 44 0 4 1239 220 303 79 0 chr4 85839782 85839858 -69790262 + MIRb SINE MIR 63 144 -124 4 1239 218 345 0 0 chr4 85839897 85839955 -69790165 + L4 LINE RTE 1380 1437 -592 4 1239 500 324 32 32 chr4 85839959 85840147 -69789973 + MER117 DNA MER1_type 3 190 -7 4 1239 995 87 65 0 chr4 85841505 85841643 -69788477 + B1_Mus1 SINE Alu 2 148 0 4 1239 1612 261 25 14 chr4 85842175 85842607 -69787513 - Lx8 LINE L1 -800 6673 6237 4 1239 207 422 0 0 chr4 85843243 85843333 -69786787 - L2b LINE L2 -249 3126 3037 4 1239 264 122 0 0 chr4 85845599 85845640 -69784480 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1239 23 0 0 0 chr4 85847060 85847083 -69783037 + AT_rich Low_complexity Low_complexity 1 23 0 4 1239 432 0 0 0 chr4 85847375 85847423 -69782697 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1239 282 326 147 60 chr4 85848738 85849427 -69780693 - L2a LINE L2 -11 3415 2668 4 1239 552 264 81 63 chr4 85849468 85849739 -69780381 - Kanga1b DNA Tc2 -15 764 489 4 1239 459 0 0 0 chr4 85849868 85849919 -69780201 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1239 231 320 11 51 chr4 85849963 85850141 -69779979 - L1MEc LINE L1 -1380 4939 4769 4 1239 565 339 62 52 chr4 85850158 85850581 -69779539 + L1MD LINE L1 4258 4684 -1462 4 1239 308 316 107 45 chr4 85850587 85850752 -69779368 - L1M5 LINE L1 -1902 4244 4068 4 1239 3739 49 11 6 chr4 85850752 85851226 -69778894 - L1Md_F2 LINE L1 0 6582 6107 4 1239 308 316 107 45 chr4 85851226 85851302 -69778818 - L1M5 LINE L1 -2079 4067 3990 4 1239 431 70 0 27 chr4 85851313 85851386 -69778734 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 4 1239 249 33 0 0 chr4 85851390 85851420 -69778700 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1239 350 170 11 0 chr4 85851420 85851514 -69778606 + GA-rich Low_complexity Low_complexity 1 95 0 4 1239 589 287 112 44 chr4 85851514 85851944 -69778176 - L1MEc LINE L1 -2178 4141 3683 4 154 1683 207 148 10 chr4 85851947 85852439 -69777681 - L1MEc LINE L1 -5402 998 439 4 1240 496 97 21 0 chr4 85852455 85852548 -69777572 + (TC)n Simple_repeat Simple_repeat 2 96 0 4 1240 247 328 169 22 chr4 85852826 85853004 -69777116 - Kanga1b DNA Tc2 -403 376 173 4 1240 253 271 14 126 chr4 85854307 85854522 -69775598 - Lx8 LINE L1 -10 7463 7273 4 1240 2068 138 67 9 chr4 85854773 85855117 -69775003 + ORR1B2 LTR MaLR 3 366 -1 4 1240 831 208 65 0 chr4 85856025 85856179 -69773941 - B3 SINE B2 -52 164 1 4 1240 1024 160 20 49 chr4 85856739 85856943 -69773177 - B3A SINE B2 0 198 1 4 1240 1100 82 0 7 chr4 85857072 85857207 -69772913 + B1_Mm SINE Alu 1 135 -12 4 1240 257 25 0 70 chr4 85857207 85857250 -69772870 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1240 1100 82 0 7 chr4 85857250 85857262 -69772858 + B1_Mm SINE Alu 136 147 0 4 1240 545 289 82 0 chr4 85857585 85857744 -69772376 + B3A SINE B2 1 172 -26 4 1240 3659 36 0 7 chr4 85857852 85858295 -69771825 - L1Md_F3 LINE L1 0 6584 6145 4 1240 1037 179 16 10 chr4 85859215 85859407 -69770713 - URR1A DNA MER1_type -1 225 33 4 1240 447 242 18 128 chr4 85860163 85860271 -69769849 + B4A SINE B4 1 96 -196 4 1240 615 257 1 12 chr4 85860271 85860422 -69769698 + B3 SINE B2 1 139 -56 4 1240 598 13 25 0 chr4 85860444 85860523 -69769597 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 4 1240 742 267 15 41 chr4 85860542 85860737 -69769383 + B4A SINE B4 98 287 -5 4 1240 310 89 22 0 chr4 85860743 85860788 -69769332 + HAL1-3A_ME LINE L1 1977 2022 -836 4 1240 371 198 256 5 chr4 85860909 85861106 -69769014 + Lx9 LINE L1 7395 7640 -4 4 1240 26 30 0 0 chr4 85861238 85861271 -69768849 + AT_rich Low_complexity Low_complexity 1 33 0 4 1240 261 258 26 0 chr4 85861299 85861388 -69768732 + CT-rich Low_complexity Low_complexity 1 91 0 4 1240 794 181 0 0 chr4 85861390 85861523 -69768597 - B1_Mus1 SINE Alu -15 133 1 4 1240 676 135 45 8 chr4 85863059 85863305 -69766815 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 4 1240 213 326 133 7 chr4 85865314 85865475 -69764645 - MIRc SINE MIR -90 178 4 4 1240 2011 268 74 34 chr4 85865784 85867047 -69763073 - L1M2 LINE L1 -565 5726 4417 4 1240 321 307 35 35 chr4 85867164 85867306 -69762814 + MIRb SINE MIR 69 210 -58 4 1240 377 331 54 16 chr4 85869518 85869647 -69760473 - RSINE1 SINE B4 -29 136 3 4 1240 200 284 70 56 chr4 85869866 85869937 -69760183 - L2c LINE L2 0 3387 3316 4 1240 288 0 0 0 chr4 85870638 85870670 -69759450 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1240 321 336 44 35 chr4 85871194 85871308 -69758812 + MIRb SINE MIR 6 120 -148 5 1240 22 0 0 0 chr4 85871346 85871368 -69758752 + AT_rich Low_complexity Low_complexity 1 22 0 5 1240 181 213 20 41 chr4 85873169 85873218 -69756902 - MER5A DNA MER1_type -98 91 44 5 1240 647 228 88 7 chr4 85873386 85873523 -69756597 - B1_Mur2 SINE Alu -1 148 1 5 1240 1086 90 0 46 chr4 85875037 85875189 -69754931 + B1_Mus1 SINE Alu 2 146 -2 5 1240 339 130 0 0 chr4 85875189 85875243 -69754877 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1240 1756 225 87 8 chr4 85875334 85875715 -69754405 - MTD LTR MaLR -8 411 1 5 1240 341 342 157 44 chr4 85875840 85876088 -69754032 + B4A SINE B4 3 278 -14 5 1240 549 42 0 0 chr4 85876093 85876165 -69753955 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1240 630 122 0 0 chr4 85876169 85876267 -69753853 + (GA)n Simple_repeat Simple_repeat 2 99 0 5 1240 420 20 0 0 chr4 85876745 85876794 -69753326 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1240 270 0 0 0 chr4 85876794 85876824 -69753296 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1240 22 56 0 0 chr4 85878155 85878191 -69751929 + AT_rich Low_complexity Low_complexity 1 36 0 5 1240 689 294 107 68 chr4 85881160 85881423 -69748697 + B4A SINE B4 20 292 0 5 1240 460 324 76 40 chr4 85881945 85882196 -69747924 + Tigger12A DNA MER2_type 119 378 -413 5 1240 207 0 0 0 chr4 85882722 85882745 -69747375 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1240 658 324 36 32 chr4 85882929 85883181 -69746939 + MIRb SINE MIR 8 260 -8 5 1240 309 51 0 0 chr4 85886418 85886457 -69743663 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1240 26 0 0 0 chr4 85891012 85891038 -69739082 + AT_rich Low_complexity Low_complexity 1 26 0 5 1240 648 0 0 0 chr4 85893077 85893149 -69736971 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 5 1240 249 224 29 15 chr4 85893504 85893572 -69736548 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1240 316 302 8 49 chr4 85894599 85894721 -69735399 + PB1D10 SINE Alu 1 117 0 5 1240 228 283 0 0 chr4 85894747 85894793 -69735327 + ID4_ SINE ID 17 62 -21 5 1240 438 20 0 0 chr4 85894815 85894866 -69735254 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1240 441 0 0 0 chr4 85895496 85895545 -69734575 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1240 186 43 0 0 chr4 85895627 85895650 -69734470 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1240 302 161 35 35 chr4 85896188 85896246 -69733874 - HAL1-3A_ME LINE L1 -825 2033 1976 5 1240 510 108 0 0 chr4 85896273 85896356 -69733764 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1240 236 196 0 29 chr4 85896435 85896509 -69733611 - Lx5 LINE L1 -387 5925 5786 5 1240 225 211 0 0 chr4 85896649 85896701 -69733419 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1240 302 352 20 27 chr4 85897285 85897434 -69732686 + MIRb SINE MIR 116 263 -5 5 1240 374 183 0 53 chr4 85899078 85899153 -69730967 + ID4 SINE ID 3 73 -10 5 1240 378 0 0 0 chr4 85899156 85899198 -69730922 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 5 1240 189 0 0 0 chr4 85899906 85899927 -69730193 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1240 351 0 0 0 chr4 85900019 85900058 -69730062 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1240 22 0 0 0 chr4 85900999 85901021 -69729099 + AT_rich Low_complexity Low_complexity 1 22 0 5 1240 34910 34 0 0 chr4 85901508 85906183 -69723937 + L1Md_T LINE L1 860 5589 -297 5 1240 8024 56 0 0 chr4 85906183 85907204 -69722916 + L1Md_T LINE L1 5590 6585 0 5 1240 217 261 0 21 chr4 85907412 85907459 -69722661 + ID4 SINE ID 2 47 -36 5 1240 673 255 45 15 chr4 85907681 85907880 -69722240 - B3 SINE B2 -10 206 2 5 1240 444 339 72 6 chr4 85907884 85908065 -69722055 - B3A SINE B2 -5 193 1 5 1240 884 325 80 3 chr4 85908263 85908599 -69721521 + Lx8 LINE L1 6931 7292 -181 5 1240 21 36 0 0 chr4 85908795 85908823 -69721297 + AT_rich Low_complexity Low_complexity 1 28 0 5 1240 26 30 0 0 chr4 85909289 85909322 -69720798 + AT_rich Low_complexity Low_complexity 1 33 0 5 1240 31 0 0 0 chr4 85909858 85909889 -69720231 + AT_rich Low_complexity Low_complexity 1 31 0 5 1240 1240 178 9 9 chr4 85910681 85910897 -69719223 + B3 SINE B2 1 216 0 5 1240 983 232 10 5 chr4 85911028 85911213 -69718907 + B3 SINE B2 15 200 -16 5 1240 1259 41 0 0 chr4 85911213 85911359 -69718761 + B1_Mus2 SINE Alu 2 147 0 5 1240 253 344 33 0 chr4 85911977 85912067 -69718053 + MIRb SINE MIR 97 189 -79 5 1240 183 198 160 85 chr4 85912860 85912954 -69717166 - L3 LINE CR1 -3496 993 893 5 1240 347 261 13 113 chr4 85913566 85913598 -69716522 + ID SINE ID 56 72 -152 5 1240 442 214 0 144 chr4 85913598 85913733 -69716387 + B1F SINE Alu 2 117 0 5 1240 565 319 85 9 chr4 85913773 85913985 -69716135 + B4 SINE B4 1 228 -64 5 1240 667 253 94 11 chr4 85914621 85914801 -69715319 + B4A SINE B4 1 195 -97 5 1240 244 250 18 0 chr4 85914795 85914851 -69715269 - RSINE1 SINE B4 -106 59 3 5 1240 23 78 0 0 chr4 85914863 85914914 -69715206 + AT_rich Low_complexity Low_complexity 1 51 0 5 1240 195 69 0 0 chr4 85914930 85914959 -69715161 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 5 1240 298 302 136 19 chr4 85915052 85915214 -69714906 - L2 LINE L2 -1146 2273 2093 5 1240 236 293 61 0 chr4 85915215 85915297 -69714823 - MTE2b LTR MaLR 0 379 293 5 1240 1434 107 20 8 chr4 85915372 85915618 -69714502 - BGLII_Mus LTR ERVK -17 405 157 5 1240 1506 141 8 8 chr4 85915616 85915874 -69714246 - BGLII_Mus LTR ERVK -164 258 1 5 1240 25 0 0 0 chr4 85916454 85916479 -69713641 + AT_rich Low_complexity Low_complexity 1 25 0 5 1240 800 278 0 32 chr4 85917168 85917384 -69712736 + B3 SINE B2 2 210 -6 5 1240 716 315 112 20 chr4 85917496 85917800 -69712320 - MER44A DNA MER2_type -7 332 1 5 1240 495 255 107 27 chr4 85917817 85918079 -69712041 - LTR37A LTR ERV1 -81 345 63 5 1240 298 196 491 0 chr4 85918388 85918500 -69711620 + B3 SINE B2 39 205 -11 5 1240 216 265 0 0 chr4 85918580 85918629 -69711491 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1240 517 247 36 54 chr4 85918630 85918797 -69711323 - RSINE1 SINE B4 0 165 2 5 1240 419 107 13 0 chr4 85918915 85918990 -69711130 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1240 612 0 0 0 chr4 85919084 85919152 -69710968 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1240 199 192 27 0 chr4 85919419 85919492 -69710628 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1240 324 0 0 0 chr4 85920217 85920253 -69709867 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1240 360 0 0 0 chr4 85920423 85920463 -69709657 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1240 450 0 0 0 chr4 85920481 85920531 -69709589 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1240 581 265 86 6 chr4 85920691 85920854 -69709266 + MER58A DNA MER1_type 46 221 -3 5 1240 648 26 0 0 chr4 85923494 85923572 -69706548 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1240 231 321 70 63 chr4 85923594 85923737 -69706383 - MIRc SINE MIR -122 146 3 5 1240 753 261 82 11 chr4 85924018 85924285 -69705835 - B4A SINE B4 -6 286 1 5 1240 343 302 0 19 chr4 85925056 85925164 -69704956 - PB1D10 SINE Alu -7 110 5 5 1240 792 251 88 60 chr4 85926444 85926717 -69703403 + B4A SINE B4 2 281 -11 5 1240 221 163 0 23 chr4 85926739 85926783 -69703337 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1240 217 302 0 0 chr4 85927794 85927857 -69702263 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 5 1240 1141 289 81 14 chr4 85927873 85928407 -69701713 - L1MA6 LINE L1 -365 5935 5356 5 1240 946 136 6 6 chr4 85928407 85928577 -69701543 + (TTC)n Simple_repeat Simple_repeat 2 171 0 5 1240 1075 299 78 18 chr4 85928577 85928590 -69701530 - L1MA6 LINE L1 -933 5367 5355 5 1240 461 298 140 73 chr4 85928629 85928901 -69701219 - B4A SINE B4 0 292 3 5 1240 477 0 0 0 chr4 85928963 85929016 -69701104 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1240 821 296 174 6 chr4 85929081 85929726 -69700394 - L1MA6 LINE L1 -1017 5126 4374 5 1240 292 244 37 196 chr4 85929786 85929949 -69700171 - MTEb LTR MaLR -7 372 218 5 1240 5206 87 12 10 chr4 85930094 85930823 -69699297 - L1_Mus3 LINE L1 0 6638 5908 5 1240 467 234 14 79 chr4 85931271 85931410 -69698710 - B1F SINE Alu -15 134 5 5 1240 186 118 0 0 chr4 85931503 85931537 -69698583 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1240 1233 20 7 0 chr4 85931537 85931683 -69698437 - B1_Mus2 SINE Alu 0 147 1 5 1240 422 295 86 23 chr4 85932637 85932823 -69697297 + MIRb SINE MIR 60 260 -2 5 1240 4525 252 66 18 chr4 85933374 85935234 -69694886 - Lx9 LINE L1 -9 7635 5501 5 1240 287 237 12 62 chr4 85935368 85935449 -69694671 - ID4 SINE ID -5 78 2 5 1240 318 98 0 0 chr4 85937438 85937489 -69692631 + (TTA)n Simple_repeat Simple_repeat 3 53 0 5 1240 612 0 0 0 chr4 85938335 85938403 -69691717 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1240 995 322 29 25 chr4 85939129 85939648 -69690472 + Lx9 LINE L1 7100 7620 -24 5 1240 519 241 35 28 chr4 85940126 85940271 -69689849 + B1F SINE Alu 2 147 -2 5 1240 305 267 13 13 chr4 85940284 85940360 -69689760 + ID4_ SINE ID 4 79 -4 5 1240 223 364 15 99 chr4 85940360 85940415 -69689705 + B4A SINE B4 4 123 -169 5 1240 30 0 0 0 chr4 85940484 85940514 -69689606 + AT_rich Low_complexity Low_complexity 1 30 0 6 1240 234 345 17 34 chr4 85941679 85941796 -69688324 - L2c LINE L2 -219 3168 3054 6 1240 255 250 125 0 chr4 85942634 85942706 -69687414 - L2a LINE L2 -5 3421 3341 6 1240 601 64 18 109 chr4 85943080 85943198 -69686922 + ORR1C2 LTR MaLR 273 384 0 6 1240 266 88 3 0 chr4 85943526 85943566 -69686554 - ORR1C2 LTR MaLR -326 41 1 6 1240 721 183 158 79 chr4 85943661 85943863 -69686257 - ORR1C2 LTR MaLR 0 384 167 6 1240 258 125 0 0 chr4 85943854 85943902 -69686218 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1240 623 197 6 0 chr4 85943914 85944092 -69686028 + GA-rich Low_complexity Low_complexity 2 180 0 6 1240 810 163 62 53 chr4 85944097 85944164 -69685956 - ORR1C2 LTR MaLR -185 189 127 6 1240 189 0 0 0 chr4 85944164 85944185 -69685935 + (C)n Simple_repeat Simple_repeat 1 21 0 6 1240 810 142 75 29 chr4 85944185 85944315 -69685805 - ORR1C2 LTR MaLR -250 134 4 6 1240 671 278 133 52 chr4 85944672 85945002 -69685118 - ORR1E LTR MaLR -2 357 1 6 1240 1090 154 116 29 chr4 85945116 85945323 -69684797 - URR1A DNA MER1_type -1 225 1 6 1240 256 193 0 0 chr4 85945376 85945433 -69684687 + Lx6 LINE L1 7378 7434 -26 6 1240 273 89 0 0 chr4 85946041 85946086 -69684034 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1240 298 61 41 0 chr4 85946306 85946355 -69683765 + (TAA)n Simple_repeat Simple_repeat 2 52 0 6 1240 182 227 164 15 chr4 85946528 85946595 -69683525 + MIR SINE MIR 161 237 -25 6 1240 231 351 79 22 chr4 85949819 85949997 -69680123 + MIR SINE MIR 21 208 -54 6 1240 204 301 200 14 chr4 85950825 85950970 -69679150 + MIR SINE MIR 61 232 -30 6 1240 414 0 0 0 chr4 85951435 85951481 -69678639 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1240 501 92 0 0 chr4 85951614 85951690 -69678430 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1240 280 308 7 27 chr4 85951706 85951853 -69678267 + (TATG)n Simple_repeat Simple_repeat 1 144 0 6 1240 286 255 145 38 chr4 85953225 85953384 -69676736 - MLT1B LTR MaLR -210 180 5 6 1240 876 308 40 50 chr4 85954040 85954542 -69675578 - L1MA5 LINE L1 -1 6299 5803 6 1240 642 290 45 5 chr4 85954878 85955079 -69675041 + B3 SINE B2 1 209 -7 6 1240 587 273 78 48 chr4 85955764 85955929 -69674191 + B4 SINE B4 43 221 -71 6 1240 279 0 0 0 chr4 85955929 85955960 -69674160 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1240 587 273 78 48 chr4 85955960 85956012 -69674108 + B4 SINE B4 222 269 -23 6 1240 402 21 0 0 chr4 85956012 85956059 -69674061 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1240 522 0 0 0 chr4 85956059 85956116 -69674004 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1240 587 273 78 48 chr4 85956116 85956127 -69673993 + B4 SINE B4 270 279 -13 6 1240 215 347 143 20 chr4 85956506 85956653 -69673467 - MIR SINE MIR -70 192 28 6 1240 655 309 99 12 chr4 85957187 85957521 -69672599 - MLT1A1 LTR MaLR -2 406 44 6 1240 758 279 65 53 chr4 85957521 85957858 -69672262 - L1MC4 LINE L1 -1014 7028 6688 6 1240 453 264 96 14 chr4 85957907 85958053 -69672067 + B4A SINE B4 1 158 -134 6 1240 192 77 0 0 chr4 85958072 85958098 -69672022 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1240 303 290 0 20 chr4 85958138 85958240 -69671880 - L1MC4 LINE L1 -1485 6557 6458 6 1240 853 282 144 24 chr4 85958817 85959059 -69671061 - L1MA4 LINE L1 -297 6003 5715 6 1240 252 0 0 0 chr4 85959059 85959087 -69671033 + (TTA)n Simple_repeat Simple_repeat 1 28 0 6 1240 853 274 140 21 chr4 85959087 85959363 -69670757 - L1MA4 LINE L1 -586 5714 5423 6 1240 256 218 208 8 chr4 85959671 85959796 -69670324 - L1MA4 LINE L1 -801 5342 5193 6 1240 198 0 0 0 chr4 85960041 85960063 -69670057 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1240 375 333 35 7 chr4 85960774 85960919 -69669201 + MIRc SINE MIR 2 150 -118 6 1240 228 308 118 9 chr4 85961188 85961301 -69668819 + MIR SINE MIR 104 219 -43 6 1240 240 35 0 0 chr4 85961969 85961998 -69668122 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1240 291 248 45 45 chr4 85962377 85962487 -69667633 - MLT1C LTR MaLR -4 463 354 6 1240 257 286 99 54 chr4 85962616 85962727 -69667393 - RMER10B LTR ERVL -10 388 273 6 1240 2035 198 14 84 chr4 85963055 85963540 -69666580 - RMER15 LTR ERVL -45 530 80 6 1240 393 248 33 0 chr4 85963543 85963664 -69666456 - MLT1C LTR MaLR -342 125 1 6 1240 5535 62 4 1 chr4 85964621 85965321 -69664799 - L1_Mus2 LINE L1 0 6566 5865 6 1240 233 284 162 17 chr4 85965344 85965523 -69664597 - L1M5 LINE L1 -277 5896 5692 6 1240 320 331 140 37 chr4 85965575 85965954 -69664166 - MLT1F LTR MaLR 0 548 131 6 1240 241 312 0 0 chr4 85968697 85968761 -69661359 + MER58A DNA MER1_type 1 64 -160 6 1240 333 0 0 0 chr4 85968888 85968925 -69661195 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1240 244 218 18 0 chr4 85969168 85969223 -69660897 + MER94 DNA AcHobo 77 132 -2 6 1240 439 312 109 50 chr4 85969396 85969716 -69660404 + MER2 DNA MER2_type 1 339 -6 6 1240 244 282 0 23 chr4 85969913 85970000 -69660120 - MIRb SINE MIR -77 191 107 6 1240 261 75 0 0 chr4 85971245 85971285 -69658835 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1240 33 56 0 0 chr4 85971745 85971799 -69658321 + AT_rich Low_complexity Low_complexity 1 54 0 6 1240 525 291 145 26 chr4 85972954 85973264 -69656856 - MLT1D LTR MaLR -1 504 158 6 1240 219 133 0 0 chr4 85973444 85973489 -69656631 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1240 5519 77 32 20 chr4 85973493 85974278 -69655842 - Lx3_Mus LINE L1 -1 7008 6215 6 1240 1703 228 120 30 chr4 85975798 85976299 -69653821 - RMER15 LTR ERVL -3 572 27 6 1240 405 0 0 0 chr4 85977761 85977806 -69652314 + (CATA)n Simple_repeat Simple_repeat 4 48 0 6 1240 494 30 0 29 chr4 85977842 85977911 -69652209 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 6 1240 191 295 12 25 chr4 85978103 85978183 -69651937 - L2a LINE L2 -2 3424 3346 6 1240 1136 82 0 0 chr4 85979372 85979519 -69650601 + B1_Mus2 SINE Alu 1 147 0 6 1240 414 0 0 0 chr4 85979519 85979565 -69650555 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1240 317 268 12 12 chr4 85979846 85979929 -69650191 + ID2 SINE ID 1 83 0 6 1240 201 339 0 0 chr4 85980013 85980078 -69650042 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 6 1240 377 326 86 33 chr4 85980409 85980561 -69649559 + RSINE1 SINE B4 6 165 0 6 1240 217 238 0 0 chr4 85980562 85980604 -69649516 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1240 1272 92 0 0 chr4 85980720 85981005 -69649115 + (TTCC)n Simple_repeat Simple_repeat 1 285 0 6 1240 582 231 183 21 chr4 85981030 85981216 -69648904 - B3 SINE B2 0 216 1 6 1240 474 327 89 20 chr4 85981853 85982056 -69648064 - MLT1J LTR MaLR -295 217 1 6 1241 183 389 88 19 chr4 85984694 85984854 -69645266 + MIRb SINE MIR 46 216 -52 6 1241 241 274 128 64 chr4 85985140 85985265 -69644855 + B4A SINE B4 148 280 -12 6 1241 380 20 20 0 chr4 85985290 85985339 -69644781 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1241 210 71 0 0 chr4 85985989 85986017 -69644103 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 6 1241 1260 155 0 9 chr4 85986693 85986914 -69643206 - URR1A DNA MER1_type 0 226 8 6 1241 396 0 0 0 chr4 85989392 85989436 -69640684 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 1241 510 175 0 0 chr4 85990515 85990658 -69639462 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 1241 198 361 96 0 chr4 85991715 85991798 -69638322 - L2b LINE L2 -43 3332 3242 6 1241 190 321 69 35 chr4 85992284 85992429 -69637691 - L2b LINE L2 -266 3160 3011 6 1241 367 79 0 45 chr4 85993023 85993089 -69637031 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 6 1241 232 222 14 14 chr4 85993301 85993374 -69636746 + (CATA)n Simple_repeat Simple_repeat 2 74 0 6 1241 5167 53 0 5 chr4 85993851 85994476 -69635644 - L1_Mus1 LINE L1 -1 6566 5945 6 1241 1135 164 92 0 chr4 85994649 85994856 -69635264 - URR1A DNA MER1_type 0 226 1 6 1241 248 290 93 33 chr4 85995086 85995236 -69634884 - MIR SINE MIR -69 193 35 6 1241 341 366 65 60 chr4 85996296 85996648 -69633472 - ORR1E LTR MaLR -5 354 1 6 1241 23 0 0 0 chr4 85996793 85996816 -69633304 + AT_rich Low_complexity Low_complexity 1 23 0 6 1241 1676 276 93 7 chr4 85996816 85997387 -69632733 - Lx8 LINE L1 -3 7470 6851 6 1241 342 0 0 0 chr4 85997472 85997510 -69632610 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1241 201 254 28 14 chr4 85997521 85997593 -69632527 + GA-rich Low_complexity Low_complexity 2 74 0 6 1241 35 0 0 0 chr4 85998787 85998822 -69631298 + AT_rich Low_complexity Low_complexity 1 35 0 6 1241 308 268 21 0 chr4 85999484 85999581 -69630539 + PB1D10 SINE Alu 2 100 -17 6 1241 182 301 21 117 chr4 85999818 85999912 -69630208 - MIR SINE MIR -102 106 22 6 1241 270 0 0 0 chr4 86000383 86000413 -69629707 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1241 423 0 0 0 chr4 86003161 86003208 -69626912 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1241 410 309 59 0 chr4 86003894 86004030 -69626090 + B1F SINE Alu 1 144 -5 3 1241 681 185 224 0 chr4 86004260 86004465 -69625655 + Lx9 LINE L1 7373 7623 -21 4 1241 252 0 0 0 chr4 86004466 86004494 -69625626 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1241 228 295 48 41 chr4 86004895 86005040 -69625080 + MIR SINE MIR 99 244 -18 6 1241 874 295 82 91 chr4 86007013 86007317 -69622803 - L1MB8 LINE L1 -1 6177 5851 7 1241 219 36 0 0 chr4 86007317 86007345 -69622775 + (CCA)n Simple_repeat Simple_repeat 2 29 0 8 1241 874 295 82 91 chr4 86007345 86007801 -69622319 - L1MB8 LINE L1 -328 5850 5424 7 1241 297 0 0 0 chr4 86007916 86007949 -69622171 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 9 1241 515 329 214 0 chr4 86008083 86008475 -69621645 - MLT1E2 LTR MaLR -139 488 13 1 1241 21 0 0 0 chr4 86009182 86009203 -69620917 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 211 187 26 39 chr4 86009634 86009712 -69620408 + (TATAA)n Simple_repeat Simple_repeat 2 78 0 1 1241 183 220 0 0 chr4 86010492 86010542 -69619578 + CT-rich Low_complexity Low_complexity 2 51 0 1 1241 348 94 0 0 chr4 86011723 86011776 -69618344 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1 1241 291 359 69 0 chr4 86011909 86012040 -69618080 - MLT1J1 LTR MaLR -268 176 37 1 1241 763 204 169 55 chr4 86012216 86012527 -69617593 + MTD LTR MaLR 12 414 -5 1 1241 656 201 29 29 chr4 86012967 86013105 -69617015 + B1F2 SINE Alu 1 138 -11 1 1241 216 0 0 0 chr4 86013116 86013140 -69616980 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1241 1309 280 69 60 chr4 86015092 86015366 -69614754 + L1MD1 LINE L1 19 281 -6352 1 1241 456 19 0 0 chr4 86015366 86015419 -69614701 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1241 1309 280 69 60 chr4 86015419 86015679 -69614441 + L1MD1 LINE L1 282 558 -6075 1 1241 314 298 167 61 chr4 86015734 86016027 -69614093 + L1MD1 LINE L1 764 1087 -5546 1 1241 227 316 13 0 chr4 86016039 86016115 -69614005 + L1MD1 LINE L1 4487 4563 -1974 1 1241 351 65 0 0 chr4 86016183 86016229 -69613891 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1241 254 201 184 17 chr4 86016681 86016805 -69613315 + L1MD1 LINE L1 4717 4858 -1679 1 1241 487 342 74 4 chr4 86016994 86017264 -69612856 + L1MD1 LINE L1 5095 5383 -1154 1 1241 26 50 0 0 chr4 86017347 86017387 -69612733 + AT_rich Low_complexity Low_complexity 1 40 0 2 1241 1037 235 58 13 chr4 86017480 86017790 -69612330 + L1MD1 LINE L1 5367 5690 -847 1 1241 866 113 7 34 chr4 86018663 86018810 -69611310 + URR1B DNA MER1_type 83 225 0 2 1241 417 237 58 26 chr4 86019690 86019846 -69610274 + L1MD1 LINE L1 5711 5871 -762 1 1241 904 298 90 81 chr4 86019877 86020479 -69609641 + L1MD1 LINE L1 6019 6625 -8 1 1241 232 222 0 0 chr4 86021083 86021137 -69608983 - L1MA5 LINE L1 -2 6298 6245 2 1241 370 272 76 0 chr4 86021265 86021357 -69608763 - B1F1 SINE Alu -38 111 13 2 1241 766 296 60 16 chr4 86021631 86021882 -69608238 + B4A SINE B4 4 265 -27 2 1241 307 192 0 25 chr4 86021923 86022003 -69608117 + GA-rich Low_complexity Low_complexity 2 79 0 2 1241 3153 289 55 21 chr4 86022058 86023337 -69606783 + L1_Mur3 LINE L1 4481 5802 -78 2 1241 1006 159 67 10 chr4 86023636 86023845 -69606275 + URR1A DNA MER1_type 6 226 0 2 1241 261 0 0 0 chr4 86026113 86026142 -69603978 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1241 216 67 0 0 chr4 86026755 86026785 -69603335 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1241 519 151 0 0 chr4 86026829 86026915 -69603205 + BC1_Mm scRNA scRNA 1 86 -66 3 1241 694 292 31 62 chr4 86027147 86027439 -69602681 - B4A SINE B4 0 292 10 3 1241 580 268 95 24 chr4 86030016 86030184 -69599936 + B3A SINE B2 1 180 -18 3 1241 1318 202 15 0 chr4 86030650 86030912 -69599208 - Lx9 LINE L1 -177 7467 7202 3 1241 283 312 0 48 chr4 86035050 86035134 -69594986 + L1MC1 LINE L1 6221 6300 -33 3 1241 447 19 0 0 chr4 86036695 86036747 -69593373 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1241 414 301 88 0 chr4 86036749 86036862 -69593258 - B3A SINE B2 -72 126 4 3 1241 326 366 72 27 chr4 86038098 86038390 -69591730 - L1M5 LINE L1 -347 5777 5473 3 1241 1034 311 83 22 chr4 86038990 86039636 -69590484 - L1ME1 LINE L1 -325 5854 5164 4 1241 267 321 36 54 chr4 86039774 86039942 -69590178 + MER58A DNA MER1_type 51 215 -9 4 1241 772 271 111 12 chr4 86040178 86040421 -69589699 + B4A SINE B4 3 269 -23 4 1241 282 56 0 0 chr4 86040421 86040457 -69589663 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1241 1313 131 28 0 chr4 86040457 86040671 -69589449 - URR1B DNA MER1_type -5 220 1 4 1241 261 313 14 58 chr4 86041422 86041561 -69588559 - L2 LINE L2 -386 3033 2901 4 1241 272 202 180 0 chr4 86041898 86041987 -69588133 + MER5B DNA MER1_type 30 134 -44 4 1241 229 331 81 43 chr4 86042332 86042493 -69587627 - MER58B DNA MER1_type -1 340 174 4 1241 220 277 23 46 chr4 86044021 86044108 -69586012 + MIRb SINE MIR 150 234 -34 4 1241 1168 36 7 0 chr4 86044749 86044887 -69585233 + B1_Mus2 SINE Alu 1 139 -8 4 1241 265 250 43 21 chr4 86045297 86045391 -69584729 + MIRb SINE MIR 105 200 -68 5 1241 345 47 0 0 chr4 86045829 86045872 -69584248 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1241 542 348 108 38 chr4 86047663 86047977 -69582143 + MER2 DNA MER2_type 10 345 0 5 1241 1239 41 0 0 chr4 86048082 86048229 -69581891 + B1_Mm SINE Alu 1 147 0 5 1241 237 250 84 25 chr4 86048287 86048406 -69581714 - L1MC4 LINE L1 -520 7362 7237 5 1241 426 291 65 52 chr4 86048424 86048656 -69581464 - L1MC4 LINE L1 -967 7075 6841 5 1241 285 270 120 35 chr4 86048694 86048836 -69581284 - L1MC4 LINE L1 -1361 6681 6528 5 1241 596 165 9 0 chr4 86049018 86049133 -69580987 + GA-rich Low_complexity Low_complexity 2 117 0 5 1241 495 268 139 20 chr4 86049382 86049584 -69580536 - MLT1D LTR MaLR -2 503 278 5 1241 449 283 105 21 chr4 86049623 86049814 -69580306 - MLT1D LTR MaLR -294 211 5 5 1241 394 304 119 6 chr4 86050482 86050641 -69579479 + MER58A DNA MER1_type 34 210 -14 5 1241 593 90 18 18 chr4 86050928 86051041 -69579079 + (TA)n Simple_repeat Simple_repeat 2 114 0 5 1241 401 189 65 22 chr4 86051183 86051275 -69578845 - RMER10A LTR ERVL -29 413 318 5 1241 234 299 20 10 chr4 86051324 86051422 -69578698 + GA-rich Low_complexity Low_complexity 1 99 0 6 1241 237 132 0 0 chr4 86052767 86052805 -69577315 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 1241 594 0 0 0 chr4 86054667 86054733 -69575387 + (TCC)n Simple_repeat Simple_repeat 1 66 0 6 1241 312 91 0 0 chr4 86055620 86055664 -69574456 + (TGG)n Simple_repeat Simple_repeat 1 44 0 6 1241 1853 80 0 20 chr4 86057252 86057506 -69572614 - L1_Mus1 LINE L1 0 6567 6319 6 1241 270 0 0 0 chr4 86057638 86057668 -69572452 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 1241 910 218 66 0 chr4 86057818 86058015 -69572105 + B3 SINE B2 1 210 -6 6 1241 278 98 20 0 chr4 86058395 86058446 -69571674 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1241 432 0 0 0 chr4 86060111 86060159 -69569961 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1241 1170 68 0 7 chr4 86061090 86061238 -69568882 - B1_Mus2 SINE Alu 0 147 1 6 1241 1047 127 66 6 chr4 86061792 86061974 -69568146 + Lx2 LINE L1 6805 6997 0 7 1241 278 239 117 21 chr4 86064139 86064233 -69565887 + PB1D10 SINE Alu 13 115 -2 7 1241 450 0 0 0 chr4 86064605 86064655 -69565465 + (TTGG)n Simple_repeat Simple_repeat 1 50 0 7 1241 454 234 272 4 chr4 86066321 86066549 -69563571 + L1M4 LINE L1 4814 5102 -1044 7 1241 896 149 13 54 chr4 86067009 86067158 -69562962 + B1_Mur4 SINE Alu 1 143 -7 7 1241 423 98 0 0 chr4 86067158 86067219 -69562901 + (GGA)n Simple_repeat Simple_repeat 1 61 0 7 1241 245 220 34 0 chr4 86067396 86067455 -69562665 + L1M4 LINE L1 5543 5603 -571 7 1241 236 232 14 42 chr4 86067469 86067541 -69562579 + Lx8 LINE L1 7404 7473 0 7 1241 329 245 140 28 chr4 86067687 86067830 -69562290 + B3A SINE B2 22 180 -18 7 1241 201 108 0 0 chr4 86074776 86074813 -69555307 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 7 1241 180 211 18 55 chr4 86075052 86075107 -69555013 + L2 LINE L2 64 116 -3303 7 1241 21908 84 9 4 chr4 86075712 86079445 -69550675 + L1_Mus1 LINE L1 2815 6567 0 8 1241 30 27 0 0 chr4 86079451 86079488 -69550632 + AT_rich Low_complexity Low_complexity 1 37 0 8 1241 279 71 0 0 chr4 86079745 86079787 -69550333 + (A)n Simple_repeat Simple_repeat 1 42 0 8 1241 708 284 81 35 chr4 86081878 86082137 -69547983 + MLT1A1 LTR MaLR 72 342 -66 8 1241 325 102 34 0 chr4 86082159 86082218 -69547902 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1241 198 0 0 0 chr4 86082608 86082630 -69547490 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 8 1241 650 173 0 8 chr4 86083380 86083514 -69546606 + GA-rich Low_complexity Low_complexity 4 136 0 8 1241 375 274 42 0 chr4 86083610 86083705 -69546415 + PB1D7 SINE Alu 10 108 -12 8 1241 234 0 0 0 chr4 86083705 86083731 -69546389 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 8 1241 224 130 22 0 chr4 86083830 86083876 -69546244 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 8 1241 263 96 19 0 chr4 86083905 86083957 -69546163 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 9 1241 503 316 55 59 chr4 86084669 86084941 -69545179 + MLT1K LTR MaLR 14 284 -311 9 1241 338 277 0 11 chr4 86085183 86085278 -69544842 + MER103 DNA DNA 28 121 -45 9 1241 232 333 85 31 chr4 86085639 86085769 -69544351 - Tigger15a DNA TcMar -313 402 266 9 1241 252 0 0 0 chr4 86086991 86087019 -69543101 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 9 1241 295 224 102 0 chr4 86087394 86087492 -69542628 + Lx9 LINE L1 6648 6755 -889 9 1241 614 206 48 0 chr4 86087723 86087849 -69542271 - B1_Mur1 SINE Alu -8 141 10 9 1241 25 0 0 0 chr4 86088312 86088337 -69541783 + AT_rich Low_complexity Low_complexity 1 25 0 9 1241 1198 78 0 18 chr4 86088642 86088812 -69541308 + B2_Mm2 SINE B2 3 169 -26 9 1241 1008 86 0 0 chr4 86088814 86088954 -69541166 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 9 1241 33 0 0 0 chr4 86089732 86089765 -69540355 + AT_rich Low_complexity Low_complexity 1 33 0 1 1241 189 0 0 0 chr4 86092409 86092430 -69537690 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1241 351 274 94 77 chr4 86093339 86093372 -69536748 + CYRA11_Mm Unknown Y-chromosome 140 259 -358 1 1241 1025 155 86 19 chr4 86093372 86093453 -69536667 - URR1B DNA MER1_type -1 224 131 1 1241 6016 57 0 4 chr4 86093453 86094193 -69535927 - L1Md_F2 LINE L1 -12 6570 5834 1 1241 351 274 94 77 chr4 86094193 86094311 -69535809 + CYRA11_Mm Unknown Y-chromosome 260 375 -242 1 1241 691 205 8 0 chr4 86095948 86096070 -69534050 - B1_Mur3 SINE Alu -26 123 1 1 1241 423 38 0 0 chr4 86096071 86096124 -69533996 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1241 347 255 197 7 chr4 86096137 86096279 -69533841 - B3A SINE B2 -18 180 12 1 1241 230 291 0 34 chr4 86096378 86096467 -69533653 + T-rich Low_complexity Low_complexity 2 87 0 1 1241 746 250 30 30 chr4 86097216 86097414 -69532706 + B3A SINE B2 1 198 0 1 1241 342 45 0 0 chr4 86097688 86097732 -69532388 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1241 254 268 42 73 chr4 86097842 86098007 -69532113 + L1MEe LINE L1 1319 1478 -4606 1 1241 342 258 155 0 chr4 86098204 86098301 -69531819 + ID_B1 SINE B4 82 193 -31 1 1241 346 328 60 28 chr4 86098378 86098626 -69531494 + L1_Mur3 LINE L1 2162 2417 -3463 1 1241 1163 313 40 68 chr4 86098636 86099509 -69530611 + L1_Rod LINE L1 4708 5556 -291 1 1241 198 71 0 0 chr4 86099509 86099537 -69530583 + (CCCTAA)n Simple_repeat Simple_repeat 5 32 0 1 1241 2245 306 118 50 chr4 86099650 86101754 -69528366 - L1M4b LINE L1 -1112 5891 3644 1 1241 654 229 57 0 chr4 86101762 86101902 -69528218 + B1_Mur1 SINE Alu 2 149 0 1 1241 435 310 36 79 chr4 86102723 86102975 -69527145 - B4A SINE B4 -48 244 4 1 1241 493 295 31 25 chr4 86103239 86103399 -69526721 - RSINE1 SINE B4 -2 163 3 1 1241 252 277 15 0 chr4 86103535 86103600 -69526520 - RSINE1 SINE B4 -97 68 3 1 1241 314 256 0 93 chr4 86103798 86103884 -69526236 + B1F SINE Alu 1 78 -71 1 1241 327 289 217 37 chr4 86103896 86104230 -69525890 - L1M4b LINE L1 -4595 2507 2003 1 1241 3549 20 2 0 chr4 86104230 86104625 -69525495 + MTA_Mm LTR MaLR 1 396 0 1 1241 9323 33 4 1 chr4 86104625 86105720 -69524400 + MTA_Mm-int LTR MaLR 1 1098 0 1 1241 3543 20 2 0 chr4 86105720 86106115 -69524005 + MTA_Mm LTR MaLR 1 396 0 1 1241 9323 33 4 1 chr4 86106115 86107210 -69522910 + MTA_Mm-int LTR MaLR 1 1098 0 1 1241 3543 20 2 0 chr4 86107210 86107605 -69522515 + MTA_Mm LTR MaLR 1 396 0 1 1241 9323 33 4 1 chr4 86107605 86108700 -69521420 + MTA_Mm-int LTR MaLR 1 1098 0 1 1241 3549 20 2 0 chr4 86108700 86109095 -69521025 + MTA_Mm LTR MaLR 1 396 0 1 1241 316 309 141 49 chr4 86109095 86109354 -69520766 - L1M4b LINE L1 -4902 2002 1723 1 1241 2029 105 13 0 chr4 86109433 86109738 -69520382 - ORR1A2 LTR MaLR 0 327 19 1 1241 354 147 0 0 chr4 86109738 86109806 -69520314 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 1 1241 281 228 50 12 chr4 86110597 86110677 -69519443 - L1M4b LINE L1 -6411 493 411 1 1241 180 0 0 0 chr4 86110723 86110743 -69519377 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1241 225 0 0 0 chr4 86111162 86111187 -69518933 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1241 335 73 29 29 chr4 86111443 86111513 -69518607 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 1 1241 438 276 54 47 chr4 86112109 86112352 -69517768 + MLT1A1 LTR MaLR 4 241 -124 1 1241 269 192 0 0 chr4 86113036 86113088 -69517032 + MTE2a LTR MaLR 1 52 -327 1 1241 342 273 114 36 chr4 86113206 86113373 -69516747 + Lx9 LINE L1 5809 5988 -1656 1 155 4498 248 56 54 chr4 86113426 86114906 -69515214 + Lx9 LINE L1 6162 7644 0 1 1242 239 243 149 0 chr4 86114938 86115012 -69515108 + L1MA6 LINE L1 6128 6212 -88 1 1242 36310 43 1 3 chr4 86115028 86120282 -69509838 + L1Md_T LINE L1 250 5589 -297 1 1242 9177 5 0 0 chr4 86120282 86121278 -69508842 + L1Md_T LINE L1 5590 6585 0 1 1242 1250 21 0 0 chr4 86121304 86121444 -69508676 + L1Md_T LINE L1 5447 5586 -297 1 1242 8647 32 0 0 chr4 86121444 86122440 -69507680 + L1Md_T LINE L1 5587 6582 0 1 1242 1004 140 0 30 chr4 86122440 86122468 -69507652 + L1_Mur1 LINE L1 5590 5612 -274 1 1242 347 243 0 0 chr4 86122689 86122822 -69507298 + B3 SINE B2 1 215 -1 1 1242 237 119 0 0 chr4 86123083 86123125 -69506995 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 1 1242 355 325 106 0 chr4 86123622 86123782 -69506338 + B3 SINE B2 39 215 -1 1 1242 326 231 13 0 chr4 86123823 86123901 -69506219 + L1MA5 LINE L1 6219 6297 -3 1 1242 274 240 80 0 chr4 86123994 86124069 -69506051 + ID4_ SINE ID 1 81 -2 1 1242 274 385 52 0 chr4 86124311 86124446 -69505674 - MER58B DNA MER1_type -18 323 182 1 1242 565 68 11 0 chr4 86124455 86124543 -69505577 + 4.5SRNA scRNA scRNA 1 89 -5 1 1242 323 265 129 57 chr4 86124560 86124700 -69505420 - MER58B DNA MER1_type -183 158 9 1 1242 27 39 0 19 chr4 86128127 86128158 -69501962 + AT_rich Low_complexity Low_complexity 1 31 0 1 1242 3037 87 41 28 chr4 86128158 86128622 -69501498 - Lx2 LINE L1 0 6997 6528 1 1242 27 39 0 19 chr4 86128622 86128642 -69501478 + AT_rich Low_complexity Low_complexity 1 20 0 1 1242 419 294 94 69 chr4 86129494 86129739 -69500381 + L1MEb LINE L1 395 645 -5449 1 1242 237 83 0 0 chr4 86129897 86129933 -69500187 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1242 237 273 17 60 chr4 86129941 86130058 -69500062 + PB1D7 SINE Alu 4 115 -5 1 1242 242 214 162 19 chr4 86130063 86130168 -69499952 + L1MEb LINE L1 892 1011 -5189 1 1242 31 26 0 0 chr4 86130556 86130594 -69499526 + AT_rich Low_complexity Low_complexity 1 38 0 1 1242 270 116 0 0 chr4 86130627 86130670 -69499450 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1242 255 61 0 0 chr4 86130927 86130960 -69499160 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1242 228 35 0 0 chr4 86131586 86131615 -69498505 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 1242 662 230 16 0 chr4 86134703 86134829 -69495291 + B3 SINE B2 2 129 -87 1 1242 383 297 36 14 chr4 86135530 86135670 -69494450 - B4 SINE B4 -149 143 1 1 1242 415 278 27 27 chr4 86136275 86136386 -69493734 - PB1D10 SINE Alu -6 111 1 1 1242 1393 201 89 10 chr4 86136941 86137233 -69492887 + Lx6 LINE L1 6794 7108 -352 1 1242 1213 220 146 15 chr4 86137233 86137575 -69492545 + MTD LTR MaLR 19 405 -14 1 1242 327 227 57 22 chr4 86137626 86137720 -69492400 + PB1D7 SINE Alu 14 111 -9 1 1242 248 311 35 78 chr4 86137784 86137899 -69492221 - PB1D9 SINE Alu -9 111 2 1 1242 238 320 0 25 chr4 86137921 86138001 -69492119 + ID4_ SINE ID 2 79 -4 1 1242 263 223 54 0 chr4 86138003 86138115 -69492005 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 1242 28 0 0 0 chr4 86138115 86138143 -69491977 + AT_rich Low_complexity Low_complexity 1 28 0 1 1242 434 281 54 14 chr4 86138590 86138738 -69491382 - Tigger7 DNA MER2_type -3 2488 2335 1 1242 959 285 139 10 chr4 86138763 86139167 -69490953 - Tigger7 DNA MER2_type -2027 464 9 1 1242 1416 316 38 60 chr4 86139901 86140251 -69489869 + Lx8 LINE L1 6545 6882 -591 1 1242 828 231 71 15 chr4 86140251 86140449 -69489671 + B3 SINE B2 2 210 -6 1 1242 1416 320 48 75 chr4 86140449 86140981 -69489139 + Lx8 LINE L1 6883 7412 -61 1 1242 595 248 125 7 chr4 86141309 86141488 -69488632 + B3A SINE B2 2 182 -34 1 1242 633 276 141 3 chr4 86142180 86142464 -69487656 - MER33 DNA MER1_type -1 323 1 1 1242 342 218 13 0 chr4 86142602 86142680 -69487440 + ID_B1 SINE B4 146 224 0 1 1242 522 288 7 14 chr4 86142948 86143089 -69487031 - RSINE1 SINE B4 -23 142 3 1 1242 669 221 68 6 chr4 86143236 86143413 -69486707 - L1MA6 LINE L1 0 6300 6113 1 1242 310 271 37 9 chr4 86143421 86143529 -69486591 + Lx9 LINE L1 6696 6806 -838 1 1242 964 314 98 15 chr4 86143548 86144087 -69486033 + Lx9 LINE L1 7061 7644 0 1 1242 181 286 62 16 chr4 86144310 86144374 -69485746 - MIRm SINE MIR -117 159 93 1 1242 221 347 15 53 chr4 86144666 86144797 -69485323 - MIR3 SINE MIR -15 193 68 1 1242 572 350 62 15 chr4 86145362 86145473 -69484647 - Lx8 LINE L1 -21 7452 7333 1 1242 189 0 0 0 chr4 86145473 86145494 -69484626 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1242 572 350 62 15 chr4 86145494 86145718 -69484402 - Lx8 LINE L1 -141 7332 7102 1 1242 1304 172 231 34 chr4 86145722 86146107 -69484013 + RMER6B LTR ERVK 1 461 0 1 1242 602 284 41 0 chr4 86146109 86146278 -69483842 - Lx8 LINE L1 -381 7092 6917 1 1242 370 253 0 0 chr4 86146675 86146750 -69483370 - RSINE1 SINE B4 -43 122 48 1 1242 716 138 199 7 chr4 86146808 86146954 -69483166 + B2_Mm2 SINE B2 2 175 -20 1 1242 4334 276 81 43 chr4 86146966 86148892 -69481228 + Lx8 LINE L1 5355 7349 -124 1 1242 816 249 112 36 chr4 86148913 86149163 -69480957 + ORR1D2 LTR MaLR 102 370 0 1 1242 240 206 25 88 chr4 86149554 86149634 -69480486 + Lx8 LINE L1 7397 7471 -2 1 1242 381 354 73 20 chr4 86149950 86150253 -69479867 + L1ME2z LINE L1 5966 6284 -160 1 1242 766 237 19 76 chr4 86151122 86151332 -69478788 + B3A SINE B2 1 198 0 1 1242 553 253 134 21 chr4 86152564 86152758 -69477362 + B3 SINE B2 1 216 0 1 1242 902 9 9 0 chr4 86153008 86153115 -69477005 + (GAGAA)n Simple_repeat Simple_repeat 4 111 0 1 1242 522 114 0 0 chr4 86153981 86154060 -69476060 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1242 1040 60 7 20 chr4 86154645 86154798 -69475322 + L1Md_F2 LINE L1 6429 6579 -3 1 1242 466 92 0 0 chr4 86155064 86155129 -69474991 + U6 snRNA snRNA 43 107 0 1 1242 25 0 0 0 chr4 86155129 86155154 -69474966 + AT_rich Low_complexity Low_complexity 1 25 0 1 1242 297 0 0 0 chr4 86155544 86155577 -69474543 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1242 688 258 204 0 chr4 86156052 86156238 -69473882 + ID_B1 SINE B4 1 224 0 1 1242 414 0 0 0 chr4 86156782 86156828 -69473292 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1242 5229 78 22 35 chr4 86156949 86157548 -69472572 + L1VL2 LINE L1 283 875 -5460 1 1242 741 91 0 0 chr4 86157548 86157693 -69472427 + L1Md_F2 LINE L1 6458 6582 0 1 1242 9895 72 38 26 chr4 86157693 86157742 -69472378 + L1VL2 LINE L1 876 923 -2692 1 1242 3261 60 2 0 chr4 86157742 86158141 -69471979 - MTB LTR MaLR 0 400 1 1 1242 9895 64 59 14 chr4 86158141 86158515 -69471605 + L1VL2 LINE L1 924 1297 -2318 1 1242 7233 32 0 4 chr4 86158515 86159340 -69470780 + RLTR13B2 LTR ERVK 1 822 0 1 1242 9895 64 59 14 chr4 86159340 86160370 -69469750 + L1VL2 LINE L1 1298 2394 -1221 1 1242 28 61 0 0 chr4 86160785 86160834 -69469286 + AT_rich Low_complexity Low_complexity 1 49 0 1 1242 303 278 59 34 chr4 86160933 86161052 -69469068 + L1MC4 LINE L1 6756 6877 -1005 1 1242 273 83 0 0 chr4 86161054 86161090 -69469030 + L1Md_F2 LINE L1 5071 5106 -777 1 1242 2520 55 6 6 chr4 86161090 86161403 -69468717 + L1Md_F2 LINE L1 5274 5586 -297 1 1242 8213 33 13 0 chr4 86161403 86162375 -69467745 + L1Md_F3 LINE L1 5587 6571 -13 1 1242 3962 53 0 4 chr4 86162375 86162843 -69467277 + L1Md_F2 LINE L1 5127 5594 -289 1 1242 7910 54 4 4 chr4 86162843 86163817 -69466303 + L1Md_F2 LINE L1 5608 6581 -1 1 1242 473 286 202 27 chr4 86163945 86164459 -69465661 + L1MC4 LINE L1 7050 7653 -389 1 1242 2775 212 58 99 chr4 86164685 86165430 -69464690 + RMER1B Other Other 353 1066 0 1 1242 306 0 0 0 chr4 86165852 86165886 -69464234 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1242 461 329 6 31 chr4 86167973 86168133 -69461987 + RSINE1 SINE B4 6 161 -4 2 1242 444 37 0 0 chr4 86168142 86168196 -69461924 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1242 402 310 60 47 chr4 86168284 86168433 -69461687 - RSINE1 SINE B4 0 165 15 2 1242 591 292 51 86 chr4 86169242 86169534 -69460586 + B4A SINE B4 1 282 -10 2 1242 481 200 11 0 chr4 86169599 86169694 -69460426 + B1_Mur3 SINE Alu 39 134 -15 2 1242 30 45 0 0 chr4 86170128 86170172 -69459948 + AT_rich Low_complexity Low_complexity 1 44 0 2 1242 398 232 59 59 chr4 86171575 86171694 -69458426 + PB1D9 SINE Alu 2 120 0 2 1242 1210 266 40 29 chr4 86171803 86172059 -69458061 + ORR1D2 LTR MaLR 18 279 -91 2 1242 1043 149 120 34 chr4 86172059 86172267 -69457853 - URR1A DNA MER1_type 0 226 1 2 1242 1210 266 40 29 chr4 86172267 86172359 -69457761 + ORR1D2 LTR MaLR 280 370 0 2 1242 275 315 0 0 chr4 86174433 86174506 -69455614 + ID4 SINE ID 5 77 -6 2 1242 270 0 0 0 chr4 86174557 86174587 -69455533 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 1242 237 333 0 53 chr4 86174704 86174799 -69455321 + Zaphod2 DNA Tip100 5 94 -3430 2 1242 367 273 60 60 chr4 86176303 86176486 -69453634 + B3A SINE B2 1 183 -15 2 1242 22 35 0 0 chr4 86176859 86176888 -69453232 + AT_rich Low_complexity Low_complexity 1 29 0 2 1242 291 157 0 0 chr4 86177770 86177821 -69452299 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 2 1242 198 0 0 0 chr4 86177821 86177843 -69452277 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1242 458 255 24 48 chr4 86177994 86178159 -69451961 - MLT1B LTR MaLR -171 219 59 2 1242 908 276 54 18 chr4 86178657 86178934 -69451186 + B4A SINE B4 2 288 -4 2 1242 234 0 0 0 chr4 86179228 86179254 -69450866 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1242 24 53 0 0 chr4 86180414 86180452 -69449668 + AT_rich Low_complexity Low_complexity 1 38 0 2 1242 1986 172 16 42 chr4 86180798 86181175 -69448945 + ORR1B2 LTR MaLR 1 367 0 2 1242 522 262 106 32 chr4 86181359 86181548 -69448572 + B4A SINE B4 10 212 -80 2 1242 273 98 0 0 chr4 86181591 86181632 -69448488 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1242 195 167 0 0 chr4 86181855 86181897 -69448223 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1242 763 147 103 0 chr4 86182203 86182339 -69447781 - B1_Mur4 SINE Alu 0 150 1 2 1242 969 285 88 86 chr4 86182358 86183152 -69446968 + L1M4 LINE L1 3942 4737 -1409 2 1242 452 258 20 23 chr4 86183169 86183352 -69446768 + L1MB4 LINE L1 5996 6178 -2 2 1242 1192 116 25 64 chr4 86183577 86183730 -69446390 + B2_Mm2 SINE B2 1 153 -42 2 1242 789 67 0 0 chr4 86183730 86183834 -69446286 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 2 1242 1192 116 25 64 chr4 86183834 86183882 -69446238 + B2_Mm2 SINE B2 154 194 -1 2 1242 208 0 0 119 chr4 86183954 86183996 -69446124 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1242 874 162 25 70 chr4 86184026 86184225 -69445895 - B2_Mm2 SINE B2 -5 190 1 2 1242 475 240 88 7 chr4 86184246 86184393 -69445727 + MER58B DNA MER1_type 45 203 -138 2 1242 2135 117 51 0 chr4 86184431 86184764 -69445356 + Lx3A LINE L1 6632 6981 0 2 1242 387 0 0 0 chr4 86185245 86185288 -69444832 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1242 334 200 25 174 chr4 86185289 86185410 -69444710 - PB1D7 SINE Alu -8 112 10 2 1242 546 16 0 0 chr4 86185734 86185797 -69444323 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 1242 1053 118 51 45 chr4 86185803 86185981 -69444139 - B2_Mm2 SINE B2 -16 179 1 2 1242 438 277 145 26 chr4 86186116 86186309 -69443811 + MLT1J LTR MaLR 289 504 -8 2 1242 180 111 0 0 chr4 86186414 86186441 -69443679 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1242 256 275 35 58 chr4 86186514 86186600 -69443520 + BC1_Mm scRNA scRNA 1 86 -66 2 1242 333 0 0 0 chr4 86186651 86186688 -69443432 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1242 396 289 31 63 chr4 86186693 86186852 -69443268 - RSINE1 SINE B4 -1 164 11 2 1242 240 340 48 82 chr4 86187041 86187333 -69442787 - B4A SINE B4 -4 288 7 2 1242 312 274 52 10 chr4 86189240 86189336 -69440784 + ID_B1 SINE B4 96 195 -29 2 1242 235 141 51 13 chr4 86190495 86190574 -69439546 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1242 523 304 78 5 chr4 86191133 86191338 -69438782 + ID_B1 SINE B4 2 221 -3 2 1242 274 238 36 129 chr4 86192127 86192267 -69437853 + MT2B LTR ERVL 152 278 -323 2 1242 750 152 0 8 chr4 86192158 86192284 -69437836 + B1_Mur1 SINE Alu 14 138 -11 2 1242 511 313 8 0 chr4 86192461 86192592 -69437528 + B4 SINE B4 65 196 -96 2 1242 2677 91 0 110 chr4 86192595 86192910 -69437210 + Lx5 LINE L1 5488 5799 -87 2 1242 1157 61 0 13 chr4 86192910 86193059 -69437061 + B1_Mm SINE Alu 1 147 0 2 1242 2677 133 27 101 chr4 86193059 86193353 -69436767 + Lx5 LINE L1 5797 6069 -981 2 1242 2721 129 64 2 chr4 86193354 86193806 -69436314 + Lx3B LINE L1 6486 6965 -8 2 1242 312 137 0 0 chr4 86193806 86193857 -69436263 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1242 939 18 0 0 chr4 86193939 86194048 -69436072 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 2 1242 371 21 21 0 chr4 86194090 86194138 -69435982 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1242 229 324 8 67 chr4 86194772 86194891 -69435229 + MER5A DNA MER1_type 74 185 -4 2 1242 555 276 0 16 chr4 86195086 86195215 -69434905 - RSINE1 SINE B4 -31 134 8 2 1242 327 250 96 63 chr4 86195218 86195347 -69434773 + MER20 DNA MER1_type 58 187 -596 2 1242 21 0 0 0 chr4 86195607 86195628 -69434492 + AT_rich Low_complexity Low_complexity 1 21 0 2 1242 525 275 0 0 chr4 86195628 86195748 -69434372 + RSINE1 SINE B4 3 122 -43 2 1242 357 24 0 0 chr4 86195752 86195794 -69434326 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1242 297 328 30 22 chr4 86195802 86195936 -69434184 - L3 LINE CR1 -959 3530 3396 2 1242 875 183 200 0 chr4 86196665 86196845 -69433275 - B3 SINE B2 0 216 1 2 1242 549 262 8 15 chr4 86196851 86196983 -69433137 + RSINE1 SINE B4 2 132 -33 2 1242 433 252 0 25 chr4 86197601 86197719 -69432401 + RSINE1 SINE B4 4 118 -47 2 1242 362 285 24 71 chr4 86198029 86198199 -69431921 - MIR SINE MIR -78 184 23 2 1242 288 276 0 13 chr4 86199257 86199334 -69430786 + ID4 SINE ID 6 81 -2 2 1242 562 249 111 45 chr4 86199529 86199727 -69430393 - B3 SINE B2 -4 212 2 2 1242 488 209 159 80 chr4 86199757 86199908 -69430212 - RSINE1 SINE B4 0 165 3 2 1242 322 265 0 105 chr4 86199924 86200038 -69430082 + PB1D10 SINE Alu 1 102 -15 2 1242 423 0 0 0 chr4 86200598 86200645 -69429475 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1242 22 0 0 0 chr4 86200755 86200777 -69429343 + AT_rich Low_complexity Low_complexity 1 22 0 2 1242 36 0 0 0 chr4 86201035 86201071 -69429049 + AT_rich Low_complexity Low_complexity 1 36 0 2 1242 1309 141 48 17 chr4 86201222 86201453 -69428667 - Lx LINE L1 0 6654 6417 2 1242 460 273 0 0 chr4 86201492 86201591 -69428529 + PB1D10 SINE Alu 1 99 -18 2 1242 323 310 80 0 chr4 86201607 86201707 -69428413 + ID_B1 SINE B4 84 191 -33 2 1242 301 246 0 0 chr4 86201706 86201767 -69428353 - B3 SINE B2 -154 62 2 2 1242 295 169 108 0 chr4 86202627 86202692 -69427428 + L1MEc LINE L1 623 694 -5706 2 1242 390 42 0 0 chr4 86203620 86203668 -69426452 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1242 464 276 79 6 chr4 86204694 86204858 -69425262 - MER5A DNA MER1_type -7 182 7 2 1242 268 250 71 87 chr4 86204941 86205068 -69425052 + ID_B1 SINE B4 52 176 -48 2 1242 454 171 51 103 chr4 86204982 86205099 -69425021 + PB1D7 SINE Alu 8 118 -2 2 1242 266 0 29 0 chr4 86205350 86205384 -69424736 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2 1242 336 356 17 0 chr4 86205418 86205536 -69424584 - RSINE1 SINE B4 -16 149 30 2 1242 471 257 121 30 chr4 86205891 86206083 -69424037 + RLTR12B LTR ERVK 11 227 -341 2 1242 504 0 0 0 chr4 86206083 86206139 -69423981 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1242 445 250 206 45 chr4 86206139 86206337 -69423783 + RLTR12B LTR ERVK 95 332 -27 2 1242 1882 101 24 3 chr4 86206441 86206739 -69423381 + RMER12 LTR ERVK 1 304 -1018 2 1242 444 145 0 0 chr4 86206737 86206806 -69423314 + RMER12 LTR ERVK 820 888 -434 2 1242 387 0 0 0 chr4 86206807 86206850 -69423270 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1242 400 204 40 10 chr4 86206852 86206951 -69423169 + RLTR21 LTR ERVK 1308 1409 -163 2 1242 189 0 0 0 chr4 86207051 86207072 -69423048 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1242 435 239 8 34 chr4 86207604 86207721 -69422399 + RSINE1 SINE B4 2 115 -50 2 1242 194 0 0 37 chr4 86207725 86207752 -69422368 + (CACAC)n Simple_repeat Simple_repeat 1 26 0 2 1242 203 264 0 19 chr4 86208062 86208116 -69422004 + GA-rich Low_complexity Low_complexity 3 55 0 2 1242 1237 101 16 0 chr4 86208256 86208444 -69421676 + URR1A DNA MER1_type 36 226 0 2 1242 403 303 56 14 chr4 86208444 86208588 -69421532 + MER68 LTR ERVL 412 561 -2 2 1242 560 294 103 16 chr4 86208598 86208850 -69421270 + L1ME1 LINE L1 5402 5675 -504 2 1242 623 212 0 0 chr4 86208871 86208984 -69421136 + B1_Mur1 SINE Alu 25 137 -12 2 1242 198 0 0 0 chr4 86208984 86209006 -69421114 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2 1242 562 258 8 0 chr4 86209012 86209132 -69420988 + RSINE1 SINE B4 7 127 -38 2 1242 584 285 70 32 chr4 86209307 86209651 -69420469 + L1ME1 LINE L1 5680 6036 -143 2 1242 315 271 10 0 chr4 86209746 86209845 -69420275 + BC1_Mm scRNA scRNA 5 104 -48 3 1242 747 197 49 7 chr4 86209864 86210007 -69420113 + B1_Mur2 SINE Alu 1 149 0 3 1242 821 132 13 94 chr4 86210236 86210395 -69419725 - B1_Mus2 SINE Alu -1 146 1 3 1242 234 292 15 0 chr4 86210464 86210529 -69419591 - HAL1 LINE L1 -2113 394 329 3 1242 244 293 86 8 chr4 86210571 86210688 -69419432 + HAL1 LINE L1 167 292 -2215 3 1242 1411 230 78 32 chr4 86210700 86211203 -69418917 + RMER5 LTR ERV1 1 526 -8 3 1242 246 363 94 13 chr4 86211242 86211401 -69418719 + HAL1 LINE L1 348 519 -1988 3 1242 524 159 0 33 chr4 86211831 86211922 -69418198 + B1_Mur4 SINE Alu 55 142 -8 3 1242 2145 120 29 13 chr4 86212205 86212821 -69417299 + RLTR33 LTR ERVK 10 676 -2 3 1242 28 0 0 0 chr4 86212871 86212899 -69417221 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 398 307 184 0 chr4 86212960 86213074 -69417046 + RSINE1 SINE B4 12 146 -19 3 1242 21 82 0 0 chr4 86213092 86213141 -69416979 + AT_rich Low_complexity Low_complexity 1 49 0 3 1242 1000 270 59 86 chr4 86213405 86213880 -69416240 + RLTR12B LTR ERVK 54 515 -13 3 1242 561 289 36 12 chr4 86214547 86214715 -69415405 + B3A SINE B2 1 172 -26 3 1242 261 0 0 0 chr4 86214737 86214766 -69415354 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1242 3822 184 59 43 chr4 86215044 86215909 -69414211 + RLTR18-int LTR ERVK 4124 5002 -359 3 1242 2419 93 19 0 chr4 86215914 86216235 -69413885 + ORR1A2 LTR MaLR 1 327 0 3 1242 1685 148 23 26 chr4 86216235 86216374 -69413746 + RLTR18-int LTR ERVK 5052 5194 -167 3 1242 3024 78 8 2 chr4 86216374 86216772 -69413348 - MTB LTR MaLR 0 400 1 3 1242 1685 148 23 26 chr4 86216772 86216938 -69413182 + RLTR18-int LTR ERVK 5195 5356 -5 3 1242 2055 232 13 64 chr4 86216948 86217481 -69412639 + RLTR18B LTR ERVK 5 510 -2 3 1242 437 306 60 51 chr4 86217535 86218010 -69412110 + L1_Mur3 LINE L1 1203 1685 -4162 3 1242 297 209 140 21 chr4 86218038 86218131 -69411989 - RMER4B LTR ERVK 0 585 482 3 1242 318 315 34 0 chr4 86218157 86218246 -69411874 + B3A SINE B2 42 133 -65 3 1242 333 0 0 0 chr4 86218288 86218325 -69411795 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1242 2786 228 132 44 chr4 86218552 86219341 -69410779 + Lx8 LINE L1 6097 6954 -519 3 1242 4299 110 61 37 chr4 86219410 86219817 -69410303 - RMER6A LTR ERVK 0 756 325 3 1242 312 27 0 0 chr4 86219817 86219854 -69410266 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1242 252 0 0 0 chr4 86219854 86219881 -69410239 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1242 4299 110 61 37 chr4 86219881 86220210 -69409910 - RMER6A LTR ERVK -432 324 2 3 1242 334 143 0 5 chr4 86220251 86220316 -69409804 - B2_Mm2 SINE B2 -107 109 47 3 1242 1197 99 35 6 chr4 86220329 86220502 -69409618 - B2_Mm1t SINE B2 -14 179 2 3 1242 651 229 62 86 chr4 86220535 86220689 -69409431 - B3 SINE B2 -11 205 39 3 1242 279 0 0 0 chr4 86220689 86220720 -69409400 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1242 651 229 62 86 chr4 86220720 86220775 -69409345 - B3 SINE B2 -178 38 1 3 1242 201 94 0 0 chr4 86223001 86223033 -69407087 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1242 905 204 34 17 chr4 86223301 86223480 -69406640 + B3 SINE B2 1 182 -34 3 1242 437 244 172 22 chr4 86223525 86223705 -69406415 + ID_B1 SINE B4 11 217 -7 3 1242 249 277 108 0 chr4 86223713 86223778 -69406342 + ID4_ SINE ID 4 75 -8 3 1242 390 296 10 30 chr4 86224123 86224224 -69405896 + PB1D7 SINE Alu 22 120 0 3 1242 274 104 0 3 chr4 86224549 86224595 -69405525 + B1_Mur1 SINE Alu 82 140 -9 3 1242 227 273 0 0 chr4 86225233 86225277 -69404843 + ID_B1 SINE B4 95 138 -86 3 1242 371 261 22 22 chr4 86225238 86225328 -69404792 + PB1D7 SINE Alu 19 108 -12 3 1242 464 119 226 10 chr4 86225462 86225564 -69404556 - B1_Mur2 SINE Alu -7 142 19 3 1242 531 213 229 6 chr4 86225609 86225779 -69404341 + B3 SINE B2 3 210 -6 3 1242 22 0 0 0 chr4 86225811 86225833 -69404287 + AT_rich Low_complexity Low_complexity 1 22 0 3 1242 186 232 0 44 chr4 86226408 86226453 -69403667 - MER5A DNA MER1_type -121 68 26 3 1242 189 290 185 9 chr4 86226467 86226575 -69403545 + MIRb SINE MIR 105 231 -37 3 1242 24 67 0 0 chr4 86228192 86228237 -69401883 + AT_rich Low_complexity Low_complexity 1 45 0 3 1242 367 169 84 0 chr4 86228292 86228375 -69401745 + MLT1B LTR MaLR 4 93 -297 3 1242 408 20 0 0 chr4 86228381 86228430 -69401690 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1242 270 0 0 0 chr4 86228430 86228459 -69401661 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1242 271 292 0 20 chr4 86228593 86228684 -69401436 + B1F SINE Alu 39 127 -22 3 1242 893 96 177 13 chr4 86230124 86230282 -69399838 + B2_Mm2 SINE B2 4 187 -8 3 1242 453 285 54 0 chr4 86230294 86230424 -69399696 - MER58A DNA MER1_type -43 181 45 3 1242 361 188 67 101 chr4 86230804 86230893 -69399227 - RSINE1 SINE B4 -4 161 76 3 1242 226 167 18 53 chr4 86231473 86231530 -69398590 - B3A SINE B2 -141 57 3 3 1242 444 302 8 37 chr4 86232065 86232199 -69397921 + B1F SINE Alu 20 149 0 3 1242 400 248 124 0 chr4 86232671 86232726 -69397394 + PB1D7 SINE Alu 1 55 -65 3 1242 1242 62 0 0 chr4 86232726 86232870 -69397250 + B1_Mus1 SINE Alu 5 148 0 3 1242 400 248 124 0 chr4 86232870 86232919 -69397201 + PB1D7 SINE Alu 56 117 -3 3 1242 262 327 157 9 chr4 86232920 86233028 -69397092 + RSINE1 SINE B4 1 124 -41 3 1242 189 0 0 0 chr4 86233030 86233051 -69397069 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1242 39 22 0 0 chr4 86233233 86233279 -69396841 + AT_rich Low_complexity Low_complexity 1 46 0 3 1242 29 28 0 0 chr4 86233430 86233466 -69396654 + AT_rich Low_complexity Low_complexity 1 36 0 3 1242 1328 122 0 5 chr4 86233547 86233736 -69396384 + B2_Mm1t SINE B2 1 188 -5 3 1242 284 303 59 20 chr4 86233882 86233983 -69396137 + RSINE1 SINE B4 43 147 -18 3 1242 202 95 48 0 chr4 86233983 86234025 -69396095 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1242 315 228 120 0 chr4 86234073 86234165 -69395955 + PB1D9 SINE Alu 10 112 -8 3 1242 336 48 0 0 chr4 86234165 86234207 -69395913 + (TAA)n Simple_repeat Simple_repeat 2 43 0 3 1242 662 235 141 0 chr4 86234240 86234410 -69395710 + B3 SINE B2 17 210 -6 3 1242 213 232 0 111 chr4 86235064 86235127 -69394993 - ID2 SINE ID -22 61 6 3 1242 469 266 97 0 chr4 86235497 86235621 -69394499 + ID_B1 SINE B4 89 224 0 3 1242 887 151 65 0 chr4 86236295 86236434 -69393686 - B1_Mus1 SINE Alu 0 148 1 3 1242 481 218 175 35 chr4 86236651 86236765 -69393355 + B3 SINE B2 1 130 -86 3 1242 842 143 0 0 chr4 86236812 86236938 -69393182 + B1_Mur4 SINE Alu 25 150 0 3 1242 232 192 19 0 chr4 86236946 86236998 -69393122 + A-rich Low_complexity Low_complexity 2 54 0 3 1242 223 250 0 88 chr4 86237005 86237062 -69393058 + B1F SINE Alu 80 131 -18 3 1242 328 237 0 0 chr4 86237320 86237379 -69392741 + ID_B1 SINE B4 99 157 -67 3 1242 235 293 103 58 chr4 86237379 86237407 -69392713 + B1F2 SINE Alu 18 108 -41 3 1242 1989 143 102 162 chr4 86237721 86238203 -69391917 + RLTR11B LTR ERVK 1 453 0 3 1242 426 226 63 3 chr4 86238297 86238402 -69391718 + B1F1 SINE Alu 8 125 -2 3 1242 665 258 86 0 chr4 86238466 86238629 -69391491 + B3A SINE B2 1 177 -21 3 1242 270 211 0 19 chr4 86238966 86239019 -69391101 + PB1D7 SINE Alu 2 53 -67 3 1242 526 252 72 29 chr4 86239122 86239261 -69390859 + RSINE1 SINE B4 21 165 0 3 1242 634 222 22 7 chr4 86239336 86239472 -69390648 + B1F2 SINE Alu 5 142 -7 3 1242 885 279 20 5 chr4 86239728 86239930 -69390190 - B3 SINE B2 -11 205 1 3 1242 543 277 29 0 chr4 86240203 86240340 -69389780 + ID_B1 SINE B4 84 224 0 3 1242 1284 48 0 7 chr4 86240951 86241099 -69389021 + B1_Mus2 SINE Alu 1 147 0 3 1242 222 118 0 0 chr4 86241830 86241864 -69388256 + (CATA)n Simple_repeat Simple_repeat 1 34 0 3 1242 477 233 19 19 chr4 86241956 86242061 -69388059 - B1_Mur1 SINE Alu -1 148 44 3 1242 246 261 42 42 chr4 86242009 86242081 -69388039 - RLTR25A LTR ERVK -534 569 498 3 1242 285 100 0 0 chr4 86242109 86242159 -69387961 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1242 6121 114 40 40 chr4 86242272 86243230 -69386890 + RMER17B LTR ERVK 1 958 0 3 1242 607 252 78 14 chr4 86243233 86243374 -69386746 + B4 SINE B4 73 222 -70 3 1242 675 182 0 64 chr4 86243372 86243513 -69386607 + B1_Mur1 SINE Alu 18 149 0 3 1242 505 272 31 23 chr4 86243886 86244014 -69386106 + B1_Mur1 SINE Alu 21 149 0 3 1242 728 123 0 42 chr4 86244050 86244169 -69385951 + B1_Mur2 SINE Alu 34 147 -2 3 1242 475 239 16 41 chr4 86244511 86244633 -69385487 + PB1D9 SINE Alu 1 119 -1 3 1242 229 179 0 0 chr4 86244665 86244704 -69385416 + PB1D10 SINE Alu 21 59 -58 3 1242 503 274 55 115 chr4 86244733 86244898 -69385222 + RSINE1 SINE B4 11 165 0 3 1243 979 68 95 29 chr4 86245400 86245537 -69384583 + B1_Mus2 SINE Alu 2 147 0 3 1243 338 252 20 180 chr4 86245611 86245761 -69384359 - B1_Mur1 SINE Alu -23 126 1 3 1243 255 170 0 0 chr4 86245885 86245932 -69384188 + GA-rich Low_complexity Low_complexity 5 51 0 3 1243 23 54 0 0 chr4 86246088 86246125 -69383995 + AT_rich Low_complexity Low_complexity 1 37 0 3 1243 918 255 65 0 chr4 86246128 86246328 -69383792 - B3 SINE B2 0 216 4 3 1243 452 183 139 37 chr4 86246835 86246943 -69383177 + PB1D9 SINE Alu 1 119 -1 3 1243 454 254 88 34 chr4 86247306 86247453 -69382667 + RSINE1 SINE B4 9 163 -2 4 1243 439 223 132 0 chr4 86247609 86247730 -69382390 + B1F2 SINE Alu 13 149 0 4 1243 345 174 0 0 chr4 86247758 86247827 -69382293 + (CATA)n Simple_repeat Simple_repeat 2 70 0 4 1243 1422 144 51 32 chr4 86247829 86248210 -69381910 - RMER4A LTR ERVK 0 466 1 4 1243 1058 209 39 0 chr4 86248380 86248586 -69381534 + B3 SINE B2 2 215 -1 4 1243 303 257 68 81 chr4 86249359 86249380 -69380740 - B1F1 SINE Alu 0 149 131 4 1243 686 226 45 0 chr4 86249380 86249513 -69380607 - B1F SINE Alu -9 140 2 4 1243 303 257 68 81 chr4 86249513 86249639 -69380481 - B1F1 SINE Alu -19 130 4 4 1243 275 259 35 49 chr4 86249655 86249771 -69380349 - B1F1 SINE Alu -35 114 4 4 1243 790 221 69 83 chr4 86250247 86250464 -69379656 - B3 SINE B2 -1 215 2 4 1243 469 204 39 39 chr4 86250695 86250797 -69379323 + B1_Mur2 SINE Alu 2 103 -46 4 1243 512 323 70 37 chr4 86250797 86251010 -69379110 + B4A SINE B4 3 216 -76 4 1243 938 134 28 0 chr4 86251010 86251152 -69378968 + B1_Mur3 SINE Alu 4 149 0 4 1243 512 323 70 37 chr4 86251152 86251211 -69378909 + B4A SINE B4 217 284 -8 4 1243 503 240 46 39 chr4 86251359 86251489 -69378631 - B1F2 SINE Alu -1 148 18 4 1243 1892 165 65 44 chr4 86251656 86252042 -69378078 - ORR1B1 LTR MaLR 0 394 1 4 1243 250 257 82 68 chr4 86252249 86252267 -69377853 + ID_B1 SINE B4 77 153 -71 4 1243 471 189 114 26 chr4 86252267 86252381 -69377739 + B1_Mur1 SINE Alu 13 136 -13 4 1243 250 257 82 68 chr4 86252381 86252395 -69377725 + ID_B1 SINE B4 154 224 0 4 1243 515 173 9 28 chr4 86252505 86252612 -69377508 + PB1D9 SINE Alu 10 114 -6 4 1243 1175 118 5 2 chr4 86252648 86252845 -69377275 + B2_Mm1a SINE B2 2 195 0 4 1243 417 112 49 24 chr4 86253061 86253143 -69376977 + ORR1C2 LTR MaLR 3 86 -298 4 1243 307 193 0 34 chr4 86253166 86253225 -69376895 - B3 SINE B2 -155 61 5 4 1243 305 211 232 0 chr4 86253310 86253405 -69376715 + B1F2 SINE Alu 23 139 -10 4 1243 803 131 30 30 chr4 86253580 86253714 -69376406 + B1_Mus2 SINE Alu 1 134 -13 4 1243 588 160 0 29 chr4 86254927 86255030 -69375090 + RSINE1 SINE B4 12 111 -54 4 1243 378 296 56 62 chr4 86255061 86255205 -69374915 + RSINE1 SINE B4 23 165 0 4 1243 476 267 89 30 chr4 86255238 86255373 -69374747 + ID_B1 SINE B4 82 224 0 4 1243 277 197 0 26 chr4 86255391 86255469 -69374651 + GA-rich Low_complexity Low_complexity 3 78 0 4 1243 393 149 0 0 chr4 86255462 86255529 -69374591 + (GAAA)n Simple_repeat Simple_repeat 4 70 0 4 1243 268 307 0 51 chr4 86255599 86255678 -69374442 + B1F1 SINE Alu 4 78 -71 4 1243 775 235 0 20 chr4 86255678 86255830 -69374290 + B1_Mur2 SINE Alu 1 149 0 4 1243 477 50 0 0 chr4 86255968 86256028 -69374092 + (TTTTC)n Simple_repeat Simple_repeat 1 60 0 4 1243 1099 76 15 0 chr4 86256028 86256160 -69373960 - B1_Mus2 SINE Alu -12 135 2 4 1243 246 260 96 0 chr4 86256195 86256268 -69373852 + RCHARR1 DNA MER1_type 38 117 -857 4 1243 548 192 106 0 chr4 86256356 86256507 -69373613 + RCHARR1 DNA MER1_type 765 931 -43 4 1243 408 199 68 12 chr4 86256538 86256676 -69373444 + B1_Mus1 SINE Alu 1 150 0 4 1243 575 210 48 8 chr4 86256706 86256831 -69373289 + B3 SINE B2 1 130 -86 4 1243 1326 40 0 0 chr4 86256952 86257100 -69373020 + B1_Mus1 SINE Alu 1 148 0 4 1243 552 161 159 16 chr4 86258302 86258428 -69371692 + B1_Mur4 SINE Alu 6 149 -1 4 1243 229 226 250 5 chr4 86258440 86258540 -69371580 - B1F1 SINE Alu -13 136 12 4 1243 232 308 115 43 chr4 86258631 86258770 -69371350 - ID_B1 SINE B4 -13 211 63 4 1243 781 100 0 0 chr4 86258784 86258894 -69371226 + B1_Mus1 SINE Alu 33 142 -6 4 1243 5424 70 55 3 chr4 86258925 86259693 -69370427 + RLTR22_Mus LTR ERVK 1 808 -1000 4 1243 325 297 128 59 chr4 86259953 86260157 -69369963 + RMER12 LTR ERVK 1101 1318 -4 4 1243 277 322 219 37 chr4 86260158 86260568 -69369552 + L2 LINE L2 474 958 -2461 4 1243 476 281 43 0 chr4 86260721 86260860 -69369260 - L1MC5 LINE L1 -1153 6808 6664 4 1243 584 276 75 70 chr4 86260960 86261291 -69368829 + RLTR12B LTR ERVK 1 333 -195 4 1243 369 0 0 0 chr4 86261463 86261504 -69368616 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1243 296 258 76 83 chr4 86261630 86261774 -69368346 - RLTR25B LTR ERVK -445 583 441 4 1243 534 246 0 17 chr4 86261676 86261792 -69368328 - B1_Mur1 SINE Alu -12 137 24 4 1243 596 226 7 74 chr4 86261948 86262096 -69368024 - ID_B1 SINE B4 -1 223 86 4 1243 257 258 58 117 chr4 86261957 86262128 -69367992 + YREP_Mm Unknown Unknown 187 347 -1465 4 1243 988 146 7 0 chr4 86262254 86262398 -69367722 + B1_Mus2 SINE Alu 3 147 0 4 1243 1291 34 7 0 chr4 86262459 86262605 -69367515 - B1_Mus2 SINE Alu 0 147 1 4 1243 459 267 103 8 chr4 86262673 86262790 -69367330 - RSINE1 SINE B4 -34 131 4 4 1243 378 0 0 0 chr4 86263051 86263093 -69367027 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 4 1243 463 255 11 0 chr4 86263146 86263240 -69366880 - ID_B1 SINE B4 -37 187 93 4 1243 269 267 21 32 chr4 86263250 86263343 -69366777 - L1MB4 LINE L1 -39 6141 6050 4 1243 302 236 14 14 chr4 86263566 86263639 -69366481 - ID2 SINE ID -10 73 1 4 1243 292 208 63 25 chr4 86263658 86263737 -69366383 - PB1D10 SINE Alu -4 113 32 4 1243 717 12 0 0 chr4 86263836 86263918 -69366202 + (TC)n Simple_repeat Simple_repeat 2 83 0 4 1243 443 163 31 22 chr4 86263920 86264019 -69366101 - PB1D9 SINE Alu -7 113 14 4 1243 214 192 19 37 chr4 86264082 86264136 -69365984 + ID_B1 SINE B4 88 140 -84 4 1243 2966 47 3 6 chr4 86264237 86264595 -69365525 + L1_Mm LINE L1 5230 5586 -297 4 1243 8488 50 2 5 chr4 86264595 86265582 -69364538 + L1Md_F2 LINE L1 5587 6570 -12 4 1243 1391 88 0 27 chr4 86265593 86265779 -69364341 - B2_Mm2 SINE B2 -14 181 1 4 1243 562 275 35 79 chr4 86265789 86266018 -69364102 - B4A SINE B4 -73 219 1 4 1243 414 286 94 9 chr4 86266521 86266627 -69363493 - B1F SINE Alu -4 116 2 4 1243 477 97 0 0 chr4 86266771 86266843 -69363277 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1243 208 294 0 0 chr4 86266857 86266908 -69363212 + MER5A DNA MER1_type 4 54 -135 4 1243 1135 122 0 34 chr4 86266933 86267096 -69363024 + B2_Mm2 SINE B2 1 158 -37 4 1243 195 42 0 0 chr4 86267096 86267120 -69363000 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1243 1135 122 0 34 chr4 86267120 86267134 -69362986 + B2_Mm2 SINE B2 159 172 -23 4 1243 579 167 83 0 chr4 86267150 86267258 -69362862 + B1_Mus1 SINE Alu 32 148 0 4 1243 329 255 206 0 chr4 86267485 86267587 -69362533 - PB1 SINE Alu 0 127 5 4 1243 856 295 14 5 chr4 86267656 86267874 -69362246 - ID_B1 SINE B4 0 224 5 4 1243 1251 100 0 16 chr4 86267879 86267897 -69362223 - B2_Mm2 SINE B2 -15 180 163 4 1243 213 39 0 0 chr4 86267897 86267923 -69362197 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 4 1243 1251 100 0 16 chr4 86267923 86268087 -69362033 - B2_Mm2 SINE B2 -33 162 1 4 1243 388 248 90 14 chr4 86268121 86268299 -69361821 + L1M4 LINE L1 5465 5669 -510 4 1243 599 47 58 12 chr4 86268466 86268552 -69361568 + MTA_Mm LTR MaLR 1 90 -306 4 1243 1213 72 66 86 chr4 86268581 86268736 -69361384 - B2_Mm2 SINE B2 -1 194 41 4 1243 1618 53 5 5 chr4 86268736 86268927 -69361193 - B2_Mm1t SINE B2 0 193 3 4 1243 1213 72 66 86 chr4 86268927 86268968 -69361152 - B2_Mm2 SINE B2 -155 40 2 4 1243 876 73 153 0 chr4 86268975 86269099 -69361021 - B1_Mus2 SINE Alu 0 147 5 4 1243 192 40 0 0 chr4 86269225 86269250 -69360870 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1243 252 224 0 0 chr4 86269250 86269299 -69360821 + (GCTG)n Simple_repeat Simple_repeat 3 51 0 4 1243 690 149 0 36 chr4 86269580 86269691 -69360429 - B1_Mus1 SINE Alu -20 128 22 4 1243 297 233 40 14 chr4 86269842 86269916 -69360204 + PB1D9 SINE Alu 7 82 -38 4 1243 590 204 81 29 chr4 86269980 86270116 -69360004 + RSINE1 SINE B4 2 144 -21 4 1243 203 139 0 44 chr4 86270391 86270436 -69359684 + T-rich Low_complexity Low_complexity 6 48 0 4 1243 873 186 0 14 chr4 86270441 86270588 -69359532 - B1_Mus1 SINE Alu -3 145 1 4 1243 813 280 24 14 chr4 86270744 86270954 -69359166 - B3 SINE B2 -4 212 1 4 1243 423 0 0 0 chr4 86270971 86271018 -69359102 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 4 1243 899 267 30 0 chr4 86271018 86271220 -69358900 - ID_B1 SINE B4 -12 212 5 4 1243 757 251 49 6 chr4 86271635 86271799 -69358321 + B3 SINE B2 3 173 -43 4 1243 439 226 344 6 chr4 86271854 86272014 -69358106 - B3 SINE B2 0 216 3 4 1243 627 160 180 23 chr4 86272030 86272158 -69357962 - B1F2 SINE Alu 0 149 2 4 1243 237 83 0 0 chr4 86272163 86272199 -69357921 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1243 518 259 35 0 chr4 86272219 86272335 -69357785 - RSINE1 SINE B4 -44 121 2 4 1243 243 148 77 62 chr4 86272359 86272424 -69357696 - PB1 SINE Alu -28 99 34 4 1243 261 83 0 0 chr4 86273529 86273565 -69356555 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1243 1023 136 55 28 chr4 86273710 86273891 -69356229 - B2_Mm2 SINE B2 -8 187 2 4 1243 310 261 377 0 chr4 86273916 86274071 -69356049 - B3 SINE B2 -2 214 1 4 1243 250 272 59 47 chr4 86274071 86274149 -69355971 - PB1D10 SINE Alu -38 79 1 4 1243 369 0 0 0 chr4 86274158 86274199 -69355921 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 1243 238 236 0 68 chr4 86274199 86274247 -69355873 - B1F1 SINE Alu -17 132 88 5 1243 623 279 0 0 chr4 86274244 86274373 -69355747 + ID_B1 SINE B4 96 224 0 5 1243 372 250 54 0 chr4 86274403 86274495 -69355625 + ID_B1 SINE B4 128 224 0 5 1243 505 285 53 7 chr4 86274495 86274560 -69355560 + RSINE1 SINE B4 5 75 -90 5 1243 831 230 244 10 chr4 86274560 86274863 -69355257 + ORR1D1 LTR MaLR 1 374 0 5 1243 505 285 53 7 chr4 86274863 86274949 -69355171 + RSINE1 SINE B4 76 162 -3 5 1243 300 91 0 0 chr4 86274966 86275010 -69355110 + (ATTG)n Simple_repeat Simple_repeat 4 47 0 5 1243 588 232 65 7 chr4 86275029 86275168 -69354952 + B1_Mur1 SINE Alu 2 148 -1 5 1243 571 193 8 45 chr4 86275744 86275889 -69354231 - PB1D9 SINE Alu -6 143 6 5 1243 295 204 22 3 chr4 86275916 86275983 -69354137 + B1F SINE Alu 3 70 -77 5 1243 731 227 79 37 chr4 86276137 86276352 -69353768 + ID_B1 SINE B4 1 224 0 5 1243 216 125 53 18 chr4 86276354 86276411 -69353709 + A-rich Low_complexity Low_complexity 3 61 0 5 1243 228 260 40 0 chr4 86276725 86276775 -69353345 - ID4 SINE ID 0 83 32 5 1243 486 216 21 0 chr4 86276841 86276938 -69353182 - PB1D9 SINE Alu -5 115 17 5 1243 1170 68 0 63 chr4 86277239 86277397 -69352723 + B1_Mus1 SINE Alu 1 148 0 5 1243 452 179 134 59 chr4 86277813 86277932 -69352188 - B1_Mus1 SINE Alu 0 148 21 5 1243 297 291 0 0 chr4 86278302 86278381 -69351739 + C-rich Low_complexity Low_complexity 4 82 0 5 1243 219 268 72 0 chr4 86278665 86278762 -69351358 + B1F1 SINE Alu 42 145 -4 5 1243 216 337 0 11 chr4 86279171 86279258 -69350862 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1243 401 239 111 0 chr4 86279276 86279393 -69350727 + B1F1 SINE Alu 3 132 -17 5 1243 189 0 0 0 chr4 86279581 86279602 -69350518 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 1243 659 237 0 22 chr4 86279639 86279777 -69350343 + B1_Mur1 SINE Alu 4 138 -11 5 1243 535 201 0 15 chr4 86279778 86279914 -69350206 + GA-rich Low_complexity Low_complexity 1 134 0 5 1243 194 0 39 0 chr4 86279982 86280008 -69350112 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1243 574 254 0 0 chr4 86280083 86280213 -69349907 - B1_Mur2 SINE Alu -19 130 1 5 1243 831 205 12 0 chr4 86280863 86281034 -69349086 - MTC LTR MaLR -143 278 106 5 1243 594 216 63 8 chr4 86281040 86281166 -69348954 + B1_Mus2 SINE Alu 9 141 -6 5 1243 1146 15 0 0 chr4 86281189 86281321 -69348799 + (GGAAA)n Simple_repeat Simple_repeat 4 135 0 5 1243 1116 214 32 0 chr4 86281351 86281603 -69348517 + ORR1D-int LTR MaLR 305 564 -806 5 1243 419 93 58 0 chr4 86281878 86281964 -69348156 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 5 1243 307 212 204 0 chr4 86282072 86282185 -69347935 - Tigger7 DNA MER2_type -100 2391 2256 5 1243 248 315 14 0 chr4 86282250 86282323 -69347797 - Tigger7 DNA MER2_type -2295 196 123 5 1243 2996 25 51 11 chr4 86282361 86282731 -69347389 - L1Md_F2 LINE L1 -1 6581 6197 5 1243 1461 189 99 3 chr4 86282731 86283013 -69347107 - RLTR27 LTR ERVK 0 309 1 5 1243 1393 142 55 31 chr4 86283013 86283268 -69346852 - MMERVK10C-int LTR ERVK 0 7581 7321 5 1243 417 306 18 24 chr4 86283402 86283566 -69346554 - MMERVK10C-int LTR ERVK -512 7069 6907 5 1243 347 261 52 47 chr4 86283654 86283847 -69346273 - RLTR10-int LTR ERVK -5392 1429 1236 5 1243 276 250 0 0 chr4 86284007 86284083 -69346037 - RLTR10-int LTR ERVK -6765 915 840 5 1243 707 194 59 79 chr4 86284189 86284391 -69345729 - RLTR10-int LTR ERVK -1135 852 655 5 1243 328 109 0 0 chr4 86284422 86284468 -69345652 - RLTR10-int LTR ERVK -7314 267 222 5 1243 1681 181 16 3 chr4 86284499 86284804 -69345316 - RLTR27 LTR ERVK 0 309 1 5 1243 36152 45 4 1 chr4 86284804 86285982 -69344138 - L1Md_F2 LINE L1 -380 6202 5026 5 1243 3680 27 121 0 chr4 86285982 86286422 -69343698 + MT2_Mm LTR ERVL 1 493 0 5 1243 36152 67 6 3 chr4 86286422 86291035 -69339085 - L1Md_F2 LINE L1 -858 5025 392 5 1243 351 0 0 0 chr4 86291098 86291137 -69338983 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1243 486 226 19 10 chr4 86291145 86291248 -69338872 + PB1D9 SINE Alu 10 113 -7 5 1243 528 245 0 19 chr4 86291324 86291428 -69338692 - RSINE1 SINE B4 -15 150 49 5 1243 4033 182 72 10 chr4 86291451 86292283 -69337837 + RMER19B LTR ERVK 1 884 -18 5 1243 1159 70 0 0 chr4 86292283 86292425 -69337695 + B1_Mus1 SINE Alu 1 142 -6 5 1243 423 0 0 0 chr4 86292426 86292473 -69337647 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1243 780 141 0 0 chr4 86292536 86292699 -69337421 + (TTGG)n Simple_repeat Simple_repeat 1 163 0 5 1243 438 125 0 0 chr4 86292711 86292791 -69337329 + (TTGG)n Simple_repeat Simple_repeat 1 80 0 5 1243 231 299 39 0 chr4 86292843 86292920 -69337200 + ID_B1 SINE B4 100 179 -45 5 1243 352 277 0 2 chr4 86292911 86292997 -69337123 + B1F SINE Alu 55 141 -8 5 1243 595 234 27 14 chr4 86293007 86293154 -69336966 + B1_Mur1 SINE Alu 1 149 0 5 1243 502 190 17 25 chr4 86293160 86293313 -69336807 + B1_Mus2 SINE Alu 2 149 0 5 1243 351 0 0 0 chr4 86293414 86293453 -69336667 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1243 379 275 78 52 chr4 86293453 86293494 -69336626 - RSINE1 SINE B4 -44 121 72 5 1243 2751 127 42 87 chr4 86293494 86294037 -69336083 - MURVY-LTR LTR ERV1 0 519 1 5 1243 379 275 78 52 chr4 86294037 86294110 -69336010 - RSINE1 SINE B4 -94 71 4 5 1243 409 163 31 22 chr4 86294705 86294804 -69335316 + PB1D9 SINE Alu 14 113 -7 5 1243 573 15 0 0 chr4 86294806 86294872 -69335248 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1243 21 57 0 0 chr4 86294881 86294916 -69335204 + AT_rich Low_complexity Low_complexity 1 35 0 5 1243 340 207 0 24 chr4 86294968 86295052 -69335068 + PB1D10 SINE Alu 32 113 -4 5 1243 292 236 14 14 chr4 86295071 86295144 -69334976 + ID2 SINE ID 1 73 -10 5 1243 227 258 20 49 chr4 86295358 86295460 -69334660 + L1MB4 LINE L1 6043 6141 -39 5 1243 458 245 9 29 chr4 86295461 86295566 -69334554 + ID_B1 SINE B4 87 189 -35 5 1243 1537 43 16 0 chr4 86295726 86295910 -69334210 - B2_Mm2 SINE B2 -6 189 3 5 1243 666 279 89 16 chr4 86295911 86296159 -69333961 - B4A SINE B4 -26 266 1 5 1243 375 262 23 23 chr4 86296661 86296771 -69333349 - B1F SINE Alu -4 116 3 5 1243 717 114 0 29 chr4 86296940 86297111 -69333009 + (TCTCTG)n Simple_repeat Simple_repeat 1 166 0 5 1243 185 0 40 0 chr4 86297922 86297947 -69332173 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1243 250 305 42 10 chr4 86297948 86298044 -69332076 + MER91B DNA Tip100 24 122 -68 5 1243 26 0 0 0 chr4 86298651 86298677 -69331443 + AT_rich Low_complexity Low_complexity 1 26 0 5 1243 222 333 45 27 chr4 86298677 86298788 -69331332 - PB1D10 SINE Alu 0 117 5 5 1243 22 0 0 0 chr4 86298804 86298826 -69331294 + AT_rich Low_complexity Low_complexity 1 22 0 5 1243 1457 68 15 25 chr4 86298961 86299157 -69330963 + B2_Mm2 SINE B2 2 195 0 5 1243 1416 65 48 0 chr4 86299472 86299658 -69330462 + B2_Mm2 SINE B2 1 195 0 5 1243 575 192 62 4 chr4 86299682 86299802 -69330318 + B1_Mus1 SINE Alu 4 128 -21 5 1243 336 194 30 0 chr4 86299895 86299962 -69330158 - MTC LTR MaLR -211 210 142 5 1243 489 97 0 0 chr4 86299963 86300035 -69330085 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 5 1243 414 0 0 0 chr4 86300035 86300081 -69330039 + (ACTG)n Simple_repeat Simple_repeat 3 48 0 5 1243 505 237 53 0 chr4 86300373 86300487 -69329633 - B1_Mus1 SINE Alu -20 128 9 5 1243 259 321 67 22 chr4 86300376 86300510 -69329610 - ID_B1 SINE B4 -20 204 65 5 1243 268 233 40 14 chr4 86300610 86300684 -69329436 + PB1D9 SINE Alu 7 82 -38 5 1243 432 190 47 30 chr4 86300730 86300851 -69329269 + PB1 SINE Alu 1 125 -2 5 1243 456 202 27 168 chr4 86300851 86301000 -69329120 + RSINE1 SINE B4 3 130 -35 5 1243 847 184 0 13 chr4 86301339 86301488 -69328632 - B1_Mus1 SINE Alu -1 147 1 5 1243 739 280 24 14 chr4 86301644 86301854 -69328266 - B3 SINE B2 -4 212 1 5 1243 414 0 0 0 chr4 86301871 86301917 -69328203 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1243 813 271 30 0 chr4 86301917 86302120 -69328000 - ID_B1 SINE B4 -11 213 5 5 1243 201 291 156 7 chr4 86303501 86303636 -69326484 - MIRb SINE MIR -88 180 26 5 1243 1404 81 16 0 chr4 86303941 86304127 -69325993 - B2_Mm2 SINE B2 -6 189 1 5 1243 278 200 17 0 chr4 86304180 86304240 -69325880 - RSINE1 SINE B4 -37 128 68 5 1243 240 281 12 12 chr4 86304296 86304379 -69325741 - PB1D10 SINE Alu -32 85 3 5 1243 702 248 0 20 chr4 86304947 86305099 -69325021 + B1F2 SINE Alu 1 149 0 5 1243 509 168 63 63 chr4 86305344 86305471 -69324649 - B1_Mur2 SINE Alu 0 149 23 5 1243 21 36 0 0 chr4 86305478 86305506 -69324614 + AT_rich Low_complexity Low_complexity 1 28 0 5 1243 1072 203 14 0 chr4 86305512 86305724 -69324396 - B3 SINE B2 0 216 2 5 1243 536 45 45 0 chr4 86306317 86306405 -69323715 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1243 987 116 66 50 chr4 86306553 86306734 -69323386 - B2_Mm2 SINE B2 -10 185 2 5 1243 493 226 381 0 chr4 86306759 86306914 -69323206 - B3 SINE B2 -2 214 1 5 1243 1707 21 0 0 chr4 86306936 86307127 -69322993 + B2_Mm1a SINE B2 2 192 -1 5 1243 258 226 0 46 chr4 86307175 86307240 -69322880 - B1F1 SINE Alu 0 149 88 5 1243 562 287 0 0 chr4 86307237 86307366 -69322754 + ID_B1 SINE B4 96 224 0 5 1243 335 245 116 11 chr4 86307389 86307484 -69322636 + ID_B1 SINE B4 115 219 -5 5 1243 592 250 28 7 chr4 86307649 86307790 -69322330 + B1_Mur1 SINE Alu 5 148 -1 5 1243 511 194 17 39 chr4 86308366 86308505 -69321615 - PB1D9 SINE Alu -6 143 10 5 1243 273 192 19 0 chr4 86308537 86308589 -69321531 + B1F SINE Alu 3 55 -94 5 1243 636 245 74 33 chr4 86308758 86308973 -69321147 + ID_B1 SINE B4 1 224 0 5 1243 182 107 53 18 chr4 86308975 86309032 -69321088 + A-rich Low_complexity Low_complexity 3 61 0 6 1243 1087 73 0 0 chr4 86309279 86309415 -69320705 - B1_Mus2 SINE Alu -11 136 1 6 1243 404 207 23 0 chr4 86309628 86309715 -69320405 - PB1D9 SINE Alu -5 115 27 6 1243 509 233 66 45 chr4 86311060 86311073 -69319047 + L1MB8 LINE L1 5570 5583 -601 6 1243 1004 171 14 43 chr4 86311073 86311281 -69318839 - B3 SINE B2 -14 202 1 6 1243 509 233 66 45 chr4 86311281 86311465 -69318655 + L1MB8 LINE L1 5584 5771 -413 6 1243 257 323 116 80 chr4 86311470 86311746 -69318374 + B4A SINE B4 1 286 -6 6 1243 180 77 0 0 chr4 86311754 86311780 -69318340 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1243 1882 159 50 25 chr4 86311796 86312195 -69317925 + MTC LTR MaLR 5 413 -8 6 1243 377 233 15 181 chr4 86312198 86312397 -69317723 + L1MB8 LINE L1 5774 5939 -245 6 1243 357 225 0 0 chr4 86312488 86312559 -69317561 - ID4_ SINE ID -4 79 9 6 1243 21 0 0 0 chr4 86312662 86312683 -69317437 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 489 234 69 49 chr4 86312734 86312878 -69317242 + B1F SINE Alu 1 147 -2 6 1243 1194 104 10 5 chr4 86312883 86313038 -69317082 + B2_Mm2 SINE B2 1 155 -40 6 1243 3474 28 2 0 chr4 86313038 86313433 -69316687 - MTA_Mm LTR MaLR 0 396 1 6 1243 1194 104 10 5 chr4 86313433 86313470 -69316650 + B2_Mm2 SINE B2 156 193 -2 6 1243 216 270 16 0 chr4 86313488 86313551 -69316569 + RSINE1 SINE B4 4 67 -98 6 1243 459 223 21 0 chr4 86313779 86313873 -69316247 - B1_Mur1 SINE Alu -5 144 49 6 1243 234 0 0 0 chr4 86313917 86313943 -69316177 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1243 392 195 153 8 chr4 86313947 86314071 -69316049 - B1F SINE Alu -7 142 1 6 1243 435 181 171 0 chr4 86314959 86315064 -69315056 - B1_Mur3 SINE Alu -7 142 20 6 1243 211 273 34 0 chr4 86315485 86315573 -69314547 + B1F1 SINE Alu 42 132 -17 6 1243 362 184 0 62 chr4 86316408 86316489 -69313631 + B1F SINE Alu 5 80 -69 6 1243 384 22 0 0 chr4 86317240 86317285 -69312835 + (TATG)n Simple_repeat Simple_repeat 1 45 0 6 1243 247 282 13 53 chr4 86317293 86317368 -69312752 - B3A SINE B2 -41 157 86 6 1243 447 216 41 0 chr4 86317370 86317467 -69312653 + B1F1 SINE Alu 33 133 -16 6 1243 216 0 0 0 chr4 86317472 86317496 -69312624 + (CAAAC)n Simple_repeat Simple_repeat 4 27 0 6 1243 26 0 0 0 chr4 86317557 86317583 -69312537 + AT_rich Low_complexity Low_complexity 1 26 0 6 1243 1204 120 81 5 chr4 86317598 86317808 -69312312 + URR1A DNA MER1_type 1 226 0 6 1243 659 250 21 0 chr4 86318175 86318319 -69311801 - B1F SINE Alu 0 149 3 6 1243 264 284 2 0 chr4 86318585 86318662 -69311458 + MIR SINE MIR 90 171 -97 6 1243 381 268 116 0 chr4 86318742 86318854 -69311266 - B1F SINE Alu -7 142 18 6 1243 656 216 146 35 chr4 86318919 86319145 -69310975 + B4A SINE B4 1 251 -41 6 1243 389 258 102 0 chr4 86319240 86319368 -69310752 + B1F1 SINE Alu 3 143 -6 6 1243 359 290 9 27 chr4 86319379 86319489 -69310631 + RSINE1 SINE B4 17 124 -41 6 1243 605 210 16 24 chr4 86319597 86319724 -69310396 + B1_Mus2 SINE Alu 1 126 -21 6 1243 507 225 83 0 chr4 86319933 86320053 -69310067 - B1_Mur2 SINE Alu -19 130 1 6 1243 800 206 18 0 chr4 86320704 86320874 -69309246 - MTC LTR MaLR -143 278 106 6 1243 710 218 0 8 chr4 86320880 86321014 -69309106 + B1_Mus2 SINE Alu 9 141 -6 6 1243 1172 97 11 0 chr4 86321037 86321213 -69308907 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 1243 1126 209 31 0 chr4 86321254 86321508 -69308612 + ORR1D-int LTR MaLR 305 566 -804 6 1243 234 181 35 24 chr4 86321778 86321863 -69308257 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 6 1243 1889 186 72 9 chr4 86322047 86322480 -69307640 + RLTR16 LTR ERVK 1 460 -45 6 1243 306 0 0 0 chr4 86322480 86322514 -69307606 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1243 387 0 0 0 chr4 86322514 86322556 -69307564 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1243 1212 80 16 36 chr4 86322556 86322750 -69307370 + B2_Mm2 SINE B2 6 195 0 6 1243 331 263 53 0 chr4 86322864 86322959 -69307161 - MER44B DNA MER2_type -354 196 97 6 1243 498 243 18 9 chr4 86323018 86323130 -69306990 + PB1D9 SINE Alu 1 113 -7 6 1243 548 231 0 157 chr4 86323206 86323333 -69306787 - RSINE1 SINE B4 -15 150 43 6 1243 4349 184 66 9 chr4 86323333 86324187 -69305933 + RMER19B LTR ERVK 1 902 0 6 1243 548 231 0 157 chr4 86324187 86324218 -69305902 - RSINE1 SINE B4 -123 42 17 6 1243 993 133 2 6 chr4 86324223 86324746 -69305374 + (TTGG)n Simple_repeat Simple_repeat 1 520 0 6 1243 324 239 13 220 chr4 86324782 86324932 -69305188 + B1F SINE Alu 19 137 -12 6 1243 652 196 36 14 chr4 86324946 86325086 -69305034 + B1_Mur1 SINE Alu 1 143 -6 6 1243 568 211 37 0 chr4 86325627 86325736 -69304384 - PB1D10 SINE Alu -4 113 1 6 1243 333 245 61 10 chr4 86325768 86325867 -69304253 - PB1D10 SINE Alu -13 104 1 6 1243 200 200 67 0 chr4 86325876 86325921 -69304199 + CT-rich Low_complexity Low_complexity 5 52 0 6 1243 1125 128 61 0 chr4 86325932 86326112 -69304008 - B2_Mm2 SINE B2 -4 191 1 6 1243 933 18 0 0 chr4 86326157 86326268 -69303852 + (TG)n Simple_repeat Simple_repeat 2 112 0 6 1243 924 40 8 8 chr4 86326287 86326413 -69303707 + B1_Mm SINE Alu 22 147 0 6 1243 687 204 28 14 chr4 86326510 86326654 -69303466 - B1F SINE Alu -1 148 3 6 1243 390 336 10 0 chr4 86326775 86326879 -69303241 + B1F2 SINE Alu 1 105 -44 6 1243 1221 106 0 0 chr4 86326898 86327078 -69303042 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1243 1376 152 13 60 chr4 86327079 86327380 -69302740 + RMER10B LTR ERVL 112 398 0 6 1243 210 345 0 11 chr4 86328228 86328319 -69301801 + CT-rich Low_complexity Low_complexity 2 91 0 6 1243 277 243 57 123 chr4 86328402 86328524 -69301596 + MT2B LTR ERVL 136 249 -352 6 1243 486 190 151 0 chr4 86328441 86328555 -69301565 + B1_Mus1 SINE Alu 5 142 -6 6 1243 440 254 0 63 chr4 86328685 86328811 -69301309 - PB1D9 SINE Alu -1 119 2 6 1243 248 0 31 0 chr4 86328905 86328937 -69301183 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1243 793 71 18 0 chr4 86328937 86329049 -69301071 + B1_Mm SINE Alu 34 147 0 6 1243 219 140 0 0 chr4 86329059 86329109 -69301011 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1243 614 211 22 29 chr4 86329111 86329248 -69300872 + B1F2 SINE Alu 12 147 -2 6 1243 207 0 0 0 chr4 86329249 86329272 -69300848 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1243 321 241 101 67 chr4 86329281 86329370 -69300750 + B4A SINE B4 11 103 -62 6 1243 475 204 111 0 chr4 86329364 86329472 -69300648 + RSINE1 SINE B4 15 134 -31 6 1243 4088 160 50 70 chr4 86329535 86330383 -69299737 - RMER1B Other Other -1 1065 235 6 1243 543 196 10 0 chr4 86330534 86330631 -69299489 + B1_Mur2 SINE Alu 1 98 -51 6 1243 426 225 101 0 chr4 86330868 86330997 -69299123 + B1F1 SINE Alu 7 148 -1 6 1243 226 247 103 69 chr4 86332037 86332124 -69297996 + ID_B1 SINE B4 111 200 -24 6 1243 263 228 0 122 chr4 86332787 86332877 -69297243 - PB1D9 SINE Alu -8 112 34 6 1243 1112 89 20 82 chr4 86332952 86333030 -69297090 - MT2B LTR ERVL -417 184 111 6 1243 1250 61 73 0 chr4 86333030 86333195 -69296925 + B2_Mm2 SINE B2 4 180 -15 6 1243 1112 89 20 82 chr4 86333195 86333312 -69296808 - MT2B LTR ERVL -491 110 1 6 1243 270 318 77 31 chr4 86333444 86333462 -69296658 - ID_B1 SINE B4 -7 217 86 6 1243 481 269 0 0 chr4 86333462 86333570 -69296550 - B1_Mur1 SINE Alu -37 112 5 6 1243 715 273 77 0 chr4 86333580 86333774 -69296346 - ID_B1 SINE B4 -8 216 8 6 1243 326 158 0 34 chr4 86334090 86334149 -69295971 + tRNA-Ala-GCA tRNA tRNA 2 58 -17 6 1243 252 0 0 0 chr4 86334177 86334205 -69295915 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1243 731 239 24 38 chr4 86334519 86334728 -69295392 + B3 SINE B2 1 206 -10 6 1243 274 351 103 6 chr4 86335076 86335251 -69294869 + MER58A DNA MER1_type 1 192 -32 6 1243 270 221 52 96 chr4 86335637 86335752 -69294368 + PB1D7 SINE Alu 1 110 -10 6 1243 437 252 65 32 chr4 86335839 86335962 -69294158 + ID_B1 SINE B4 39 165 -59 6 1243 657 0 0 0 chr4 86336433 86336506 -69293614 + (CTGGGG)n Simple_repeat Simple_repeat 1 73 0 6 1243 269 246 0 0 chr4 86336594 86336655 -69293465 + ID_B1 SINE B4 160 220 -4 6 1243 303 229 15 32 chr4 86336747 86336835 -69293285 - B1F SINE Alu -68 81 1 6 1243 254 248 130 123 chr4 86336835 86336906 -69293214 - ID SINE ID -150 74 3 6 1243 452 255 57 0 chr4 86337106 86337212 -69292908 + PB1D7 SINE Alu 1 112 -8 6 1243 423 288 0 9 chr4 86337536 86337648 -69292472 - B1F2 SINE Alu -15 134 24 6 1243 180 0 0 0 chr4 86337762 86337782 -69292338 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 1243 1109 92 0 0 chr4 86337784 86337926 -69292194 - B1_Mus2 SINE Alu -5 142 1 6 1243 773 155 0 0 chr4 86337961 86338090 -69292030 - B3 SINE B2 -87 129 1 6 1243 571 271 23 0 chr4 86338097 86338226 -69291894 + B1_Mur1 SINE Alu 18 149 0 6 1243 770 146 0 14 chr4 86338226 86338337 -69291783 + polypurine Low_complexity Low_complexity 3 113 0 6 1243 1344 6 0 37 chr4 86338337 86338524 -69291596 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1243 770 146 0 14 chr4 86338524 86338558 -69291562 + polypurine Low_complexity Low_complexity 114 145 0 6 1243 287 283 88 29 chr4 86338558 86338660 -69291460 + B1F1 SINE Alu 2 109 -40 6 1243 270 281 125 0 chr4 86338669 86338797 -69291323 + L1M5 LINE L1 5330 5473 -971 7 1243 189 0 0 0 chr4 86338865 86338886 -69291234 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1243 1067 115 0 0 chr4 86338886 86339034 -69291086 - B1_Mus1 SINE Alu 0 148 1 7 1243 228 263 18 0 chr4 86339055 86339112 -69291008 + ID4_ SINE ID 5 62 -21 7 1243 267 282 0 13 chr4 86339227 86339306 -69290814 + PB1D10 SINE Alu 35 112 -5 7 1243 2402 84 19 0 chr4 86339368 86339688 -69290432 - ORR1A2 LTR MaLR 0 327 2 7 1243 422 210 67 0 chr4 86339704 86339811 -69290309 - B1_Mur2 SINE Alu -6 143 12 7 1243 498 257 104 16 chr4 86339830 86340012 -69290108 - B3A SINE B2 0 198 1 7 1243 311 220 140 0 chr4 86340045 86340145 -69289975 - B1F SINE Alu 0 149 36 7 1243 576 308 58 27 chr4 86340179 86340439 -69289681 + B4A SINE B4 14 281 -11 7 1243 449 242 88 29 chr4 86340516 86340652 -69289468 - RSINE1 SINE B4 -15 150 7 7 1243 274 295 13 0 chr4 86340706 86340784 -69289336 - PB1D10 SINE Alu -21 96 18 7 1243 510 193 35 35 chr4 86340882 86340995 -69289125 - B1_Mur3 SINE Alu -36 113 1 7 1243 740 268 10 30 chr4 86341084 86341284 -69288836 + B3A SINE B2 2 197 -1 7 1243 6136 46 22 0 chr4 86341298 86342035 -69288085 + L1_Mus1 LINE L1 5815 6567 0 7 1243 862 210 139 5 chr4 86342337 86342524 -69287596 + B3 SINE B2 3 214 -2 7 1243 756 168 36 0 chr4 86342527 86342664 -69287456 - B1_Mus2 SINE Alu -5 142 1 7 1243 25 0 0 0 chr4 86342671 86342696 -69287424 + AT_rich Low_complexity Low_complexity 1 25 0 7 1243 298 240 40 0 chr4 86342697 86342772 -69287348 + ID_B1 SINE B4 146 223 -1 7 1243 767 159 8 0 chr4 86343057 86343189 -69286931 - B1_Mus2 SINE Alu -6 141 9 7 1243 736 150 0 16 chr4 86343236 86343365 -69286755 + B1_Mur4 SINE Alu 23 149 -1 7 1243 192 40 0 0 chr4 86343397 86343422 -69286698 + (TTG)n Simple_repeat Simple_repeat 1 25 0 7 1243 465 266 123 0 chr4 86343423 86343577 -69286543 - ID_B1 SINE B4 -1 223 51 7 1243 1578 296 157 69 chr4 86343578 86344488 -69285632 + Lx8 LINE L1 6379 7368 -105 7 1243 716 111 0 0 chr4 86344554 86344662 -69285458 + B2_Mm2 SINE B2 1 108 -87 7 1243 205 274 0 0 chr4 86344693 86344755 -69285365 + A-rich Low_complexity Low_complexity 1 62 0 7 1243 345 47 0 0 chr4 86344759 86344802 -69285318 + (TGG)n Simple_repeat Simple_repeat 2 44 0 7 1243 629 154 0 57 chr4 86344802 86344926 -69285194 + B1_Mur3 SINE Alu 18 134 -15 7 1243 350 206 0 171 chr4 86344926 86344954 -69285166 + ID_B1 SINE B4 99 224 0 7 1243 1819 213 65 25 chr4 86345200 86345643 -69284477 + RLTR20D LTR ERVK 51 511 -57 7 1243 296 252 94 8 chr4 86345692 86345820 -69284300 + L1M2 LINE L1 1866 2004 -4845 7 1243 1345 94 10 10 chr4 86345877 86346070 -69284050 + B2_Mm2 SINE B2 2 194 -1 7 1243 389 298 72 14 chr4 86346098 86346176 -69283944 + L1_Mur3 LINE L1 1459 1538 -4342 7 1243 261 0 0 0 chr4 86346176 86346205 -69283915 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 1243 389 298 72 14 chr4 86346205 86346402 -69283718 + L1_Mur3 LINE L1 1539 1749 -4131 7 1243 21 0 0 0 chr4 86346488 86346509 -69283611 + AT_rich Low_complexity Low_complexity 1 21 0 7 1243 279 342 10 48 chr4 86346557 86346763 -69283357 + L1M2 LINE L1 2004 2201 -4649 7 1243 1347 241 84 11 chr4 86346803 86347185 -69282935 + MTD LTR MaLR 10 419 0 7 1243 226 316 0 0 chr4 86347373 86347452 -69282668 + L1M2 LINE L1 2836 2914 -4030 7 1243 457 239 0 0 chr4 86347463 86347551 -69282569 + B3A SINE B2 8 95 -103 7 1243 3122 61 2 41 chr4 86347624 86348036 -69282084 - MTA_Mm LTR MaLR 0 396 1 7 1243 7784 76 10 69 chr4 86348036 86349202 -69280918 - MTA_Mm-int LTR MaLR 0 1098 1 7 1243 3193 58 5 8 chr4 86349202 86349599 -69280521 - MTA_Mm LTR MaLR 0 396 1 7 1243 1183 34 0 39 chr4 86349652 86349805 -69280315 + B1_Mus2 SINE Alu 1 147 0 7 1243 258 105 0 0 chr4 86349805 86349843 -69280277 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1243 892 345 26 17 chr4 86349845 86350362 -69279758 + L1M2 LINE L1 3044 3557 -3288 7 1243 3679 133 144 14 chr4 86350448 86351164 -69278956 + RMER17D2 LTR ERVK 1 809 0 7 1243 366 239 0 0 chr4 86351165 86351232 -69278888 - ID SINE ID -144 80 14 7 1243 1094 83 14 0 chr4 86351259 86351404 -69278716 - B1_Mus1 SINE Alu 0 148 2 7 1243 1218 41 0 0 chr4 86351435 86351581 -69278539 - B1_Mm SINE Alu -1 146 1 7 1243 1133 57 0 0 chr4 86352903 86353044 -69277076 + B1_Mm SINE Alu 1 141 -6 7 1243 333 0 0 0 chr4 86353046 86353083 -69277037 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 7 1243 195 42 0 0 chr4 86353085 86353109 -69277011 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1243 678 228 44 0 chr4 86353119 86353255 -69276865 + B1_Mus1 SINE Alu 1 142 -6 7 1243 27 29 0 0 chr4 86353347 86353381 -69276739 + AT_rich Low_complexity Low_complexity 1 34 0 7 1243 1144 44 0 7 chr4 86353391 86353528 -69276592 - B1_Mm SINE Alu -10 137 2 7 1243 737 224 0 52 chr4 86353669 86353824 -69276296 - B1_Mur1 SINE Alu -1 148 2 7 1243 330 163 19 204 chr4 86353847 86353955 -69276165 - ID_B1 SINE B4 -8 216 129 7 1243 1799 225 29 51 chr4 86354204 86354658 -69275462 - Lx7 LINE L1 -313 7383 6940 7 1243 717 12 0 0 chr4 86354751 86354833 -69275287 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 7 1243 854 113 78 0 chr4 86354838 86354980 -69275140 - B2_Mm2 SINE B2 -41 154 2 7 1243 201 39 0 0 chr4 86355037 86355063 -69275057 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1243 1373 159 44 0 chr4 86355194 86355445 -69274675 - RLTR12A LTR ERVK -7 561 300 7 1243 594 170 167 54 chr4 86355445 86355613 -69274507 - MYSERV6-int LTR ERVK -538 8421 8265 7 1243 245 308 110 8 chr4 86355865 86355983 -69274137 + MTE2a LTR MaLR 7 136 -243 7 1243 484 318 111 13 chr4 86355903 86356218 -69273902 + MT2A LTR ERVL 53 398 -135 7 1243 5246 156 80 6 chr4 86356228 86357255 -69272865 + RLTR25A LTR ERVK 1 1103 0 7 1243 201 74 0 0 chr4 86357522 86357549 -69272571 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 7 1243 374 260 52 0 chr4 86357628 86357724 -69272396 - PB1D7 SINE Alu 0 120 20 7 1243 536 192 92 118 chr4 86357823 86357976 -69272144 + B1_Mur2 SINE Alu 1 149 0 7 1243 351 308 18 18 chr4 86357991 86358100 -69272020 + PB1D10 SINE Alu 4 112 -5 7 1243 1074 116 0 0 chr4 86358204 86358350 -69271770 - B1_Mus1 SINE Alu 0 148 3 7 1243 314 218 8 160 chr4 86359478 86359609 -69270511 + PB1D7 SINE Alu 10 120 0 7 1243 236 200 36 36 chr4 86359766 86359787 -69270333 + T-rich Low_complexity Low_complexity 62 84 0 7 1243 408 262 49 21 chr4 86359787 86359931 -69270189 - B1F2 SINE Alu -1 148 1 7 1243 236 200 36 36 chr4 86359931 86359992 -69270128 + T-rich Low_complexity Low_complexity 2 61 0 7 1243 944 136 90 63 chr4 86360124 86360168 -69269952 - B2_Mm2 SINE B2 0 195 163 7 1243 180 0 0 0 chr4 86360168 86360188 -69269932 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1243 944 136 90 63 chr4 86360188 86360332 -69269788 - B2_Mm2 SINE B2 -33 162 2 7 1243 939 218 22 54 chr4 86360339 86360518 -69269602 - B3 SINE B2 0 216 41 7 1243 2485 111 16 11 chr4 86360518 86360883 -69269237 - ORR1B2 LTR MaLR 0 367 1 7 1243 939 218 22 54 chr4 86360883 86360926 -69269194 - B3 SINE B2 -176 40 1 7 1243 1314 106 16 0 chr4 86360988 86361177 -69268943 - B2_Mm2 SINE B2 0 195 4 7 1243 1067 273 60 47 chr4 86361266 86361735 -69268385 + L1MA4 LINE L1 5463 5937 -363 7 1243 1074 220 9 19 chr4 86361762 86361975 -69268145 + B3 SINE B2 2 212 -4 7 1243 24 0 0 0 chr4 86361985 86362009 -69268111 + AT_rich Low_complexity Low_complexity 1 24 0 7 1243 911 242 29 5 chr4 86362270 86362478 -69267642 + B3 SINE B2 3 215 -1 7 1243 653 252 117 28 chr4 86362488 86362737 -69267383 + B4A SINE B4 4 274 -18 7 1243 238 158 70 0 chr4 86362765 86362822 -69267298 + (CATA)n Simple_repeat Simple_repeat 4 64 0 7 1243 669 256 58 15 chr4 86363491 86363697 -69266423 - B3 SINE B2 0 216 2 7 1243 480 292 52 12 chr4 86363748 86363921 -69266199 + B3A SINE B2 1 180 -18 7 1243 282 56 0 0 chr4 86363922 86363958 -69266162 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1243 796 181 0 0 chr4 86363959 86364092 -69266028 - B1_Mus1 SINE Alu -5 143 11 7 1243 969 49 0 0 chr4 86364109 86364232 -69265888 + (GAAA)n Simple_repeat Simple_repeat 3 125 0 7 1243 398 69 0 17 chr4 86364514 86364573 -69265547 + (AGGGGG)n Simple_repeat Simple_repeat 2 59 0 7 1243 1066 52 73 0 chr4 86364700 86364836 -69265284 + B1_Mm SINE Alu 2 147 0 7 1243 798 221 11 32 chr4 86364841 86365028 -69265092 + B3 SINE B2 27 209 -7 7 1243 217 296 72 27 chr4 86365123 86365234 -69264886 - MIRb SINE MIR -64 204 89 7 1243 675 164 90 0 chr4 86365496 86365618 -69264502 + B1_Mur1 SINE Alu 6 138 -11 7 1243 279 0 0 0 chr4 86365625 86365656 -69264464 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 7 1243 644 192 90 23 chr4 86365840 86365973 -69264147 + B1_Mur2 SINE Alu 1 142 -7 7 1243 573 160 0 0 chr4 86366231 86366337 -69263783 + GA-rich Low_complexity Low_complexity 3 108 0 7 1243 334 306 32 32 chr4 86366386 86366511 -69263609 + ID_B1 SINE B4 100 224 0 7 1243 246 128 0 0 chr4 86366611 86366650 -69263470 + (TCC)n Simple_repeat Simple_repeat 2 40 0 7 1243 491 254 111 7 chr4 86366650 86366785 -69263335 - B1_Mur1 SINE Alu 0 149 1 7 1243 600 173 238 25 chr4 86366820 86366980 -69263140 - B3 SINE B2 0 216 23 7 1243 742 239 41 0 chr4 86367052 86367249 -69262871 - RMER10B LTR ERVL 0 398 194 7 1243 763 191 11 176 chr4 86367233 86367512 -69262608 - RMER10B LTR ERVL -134 264 32 7 1243 399 301 19 0 chr4 86367576 86367679 -69262441 + RSINE1 SINE B4 30 134 -31 7 1243 204 67 0 0 chr4 86367717 86367747 -69262373 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1243 496 293 15 0 chr4 86368036 86368169 -69261951 + ID_B1 SINE B4 86 220 -4 8 1243 294 284 12 0 chr4 86368196 86368277 -69261843 + ID4_ SINE ID 2 83 0 8 1243 655 237 126 40 chr4 86368488 86368686 -69261434 - ID_B1 SINE B4 -9 215 1 8 1243 566 248 0 33 chr4 86368937 86369087 -69261033 - B1F1 SINE Alu -2 147 3 8 1243 550 200 0 9 chr4 86369124 86369240 -69260880 - B1_Mus1 SINE Alu 0 148 34 8 1243 446 271 6 89 chr4 86369254 86369412 -69260708 - B1F SINE Alu 0 149 5 8 1243 216 97 0 0 chr4 86369426 86369457 -69260663 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1243 1108 41 0 121 chr4 86369457 86369623 -69260497 - B1_Mm SINE Alu 0 147 2 8 1243 668 12 0 12 chr4 86369821 86369903 -69260217 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 8 1243 472 221 116 14 chr4 86369918 86370056 -69260064 + B3A SINE B2 47 198 0 8 1243 369 288 125 29 chr4 86370078 86370214 -69259906 + B1F1 SINE Alu 1 149 0 8 1243 1270 27 0 0 chr4 86370582 86370728 -69259392 + B1_Mm SINE Alu 2 147 0 8 1243 282 132 0 0 chr4 86370742 86370795 -69259325 + (A)n Simple_repeat Simple_repeat 1 53 0 8 1243 227 226 19 0 chr4 86371620 86371673 -69258447 + MER5A1 DNA MER1_type 61 114 -52 8 1243 820 160 30 0 chr4 86371870 86372001 -69258119 - B1_Mur3 SINE Alu -13 136 2 8 1243 1208 55 0 0 chr4 86372454 86372599 -69257521 + B1_Mus2 SINE Alu 1 145 -2 8 1243 234 0 0 0 chr4 86372601 86372627 -69257493 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1243 23 33 0 0 chr4 86372653 86372683 -69257437 + AT_rich Low_complexity Low_complexity 1 30 0 8 1243 957 91 6 19 chr4 86372713 86372870 -69257250 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 8 1243 511 226 0 0 chr4 86372874 86372976 -69257144 - ID_B1 SINE B4 -21 203 102 8 1243 405 299 34 8 chr4 86372878 86372996 -69257124 - B1F2 SINE Alu -28 121 1 8 1243 679 163 33 66 chr4 86373023 86373174 -69256946 - B1_Mur2 SINE Alu -2 147 2 8 1243 227 51 0 49 chr4 86373328 86373357 -69256763 + B1_Mur4 SINE Alu 110 138 -12 8 1243 234 0 0 0 chr4 86373357 86373383 -69256737 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 1243 227 51 0 49 chr4 86373383 86373394 -69256726 + B1_Mur4 SINE Alu 139 148 -2 8 1243 363 239 33 92 chr4 86373942 86374062 -69256058 + B3A SINE B2 84 196 -2 8 1243 650 202 293 6 chr4 86374102 86374266 -69255854 - B3 SINE B2 -4 212 2 8 1243 730 188 0 0 chr4 86374273 86374401 -69255719 + B1_Mur4 SINE Alu 17 144 -6 8 1243 931 186 0 0 chr4 86374409 86374565 -69255555 + B3 SINE B2 2 157 -59 8 1243 22 0 0 0 chr4 86375161 86375183 -69254937 + AT_rich Low_complexity Low_complexity 1 22 0 8 1243 483 63 0 0 chr4 86375205 86375268 -69254852 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1243 369 0 0 0 chr4 86375573 86375614 -69254506 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1243 480 248 25 50 chr4 86375854 86376015 -69254105 + RSINE1 SINE B4 3 159 -6 8 155 1323 191 34 105 chr4 86376351 86376716 -69253404 - ORR1B2 LTR MaLR -1 420 83 8 1244 309 288 29 88 chr4 86376716 86376853 -69253267 - RMER10B LTR ERVL 0 398 270 8 1244 436 198 0 30 chr4 86377137 86377236 -69252884 - ORR1B2 LTR MaLR -325 96 1 8 1244 5561 173 54 29 chr4 86377236 86378237 -69251883 - ORR1B2-int LTR MaLR 0 1258 225 8 1244 2306 89 6 58 chr4 86378237 86378581 -69251539 - ORR1A3 LTR MaLR 0 326 1 8 1244 5561 173 54 29 chr4 86378581 86378804 -69251316 - ORR1B2-int LTR MaLR -1034 224 3 8 1244 2061 118 66 0 chr4 86378810 86379142 -69250978 - ORR1B2 LTR MaLR -8 359 6 8 1244 657 186 46 8 chr4 86379197 86379327 -69250793 - MTD LTR MaLR 0 419 285 8 1244 320 173 195 12 chr4 86379313 86379375 -69250745 + B3 SINE B2 113 183 -33 8 1244 189 0 0 0 chr4 86379375 86379396 -69250724 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 8 1244 320 173 195 12 chr4 86379396 86379415 -69250705 + B3 SINE B2 184 209 -7 8 1244 1405 170 68 35 chr4 86379607 86379642 -69250478 - RMER19C LTR ERVK -7 604 571 8 1244 1453 73 11 0 chr4 86379642 86379833 -69250287 - B2_Mm1t SINE B2 0 193 1 8 1244 1405 170 68 35 chr4 86379833 86380108 -69250012 - RMER19C LTR ERVK -41 570 284 8 1244 590 181 108 23 chr4 86380477 86380607 -69249513 - B1F SINE Alu -8 141 1 8 1244 440 298 55 28 chr4 86380617 86380762 -69249358 - B1F SINE Alu 0 149 1 8 1244 731 246 36 31 chr4 86380764 86380986 -69249134 - L1M2 LINE L1 -469 5822 5600 8 1244 1117 79 0 0 chr4 86381000 86381140 -69248980 + B1_Mus1 SINE Alu 2 141 -7 8 1244 273 57 0 0 chr4 86381278 86381313 -69248807 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1244 1005 244 9 9 chr4 86381370 86381581 -69248539 - B3 SINE B2 0 216 6 8 1244 551 53 13 0 chr4 86381587 86381662 -69248458 + (TTTTC)n Simple_repeat Simple_repeat 3 78 0 8 1244 1180 63 0 0 chr4 86381673 86381816 -69248304 - B1_Mus2 SINE Alu -3 144 2 8 1244 1052 180 95 0 chr4 86381913 86382102 -69248018 - B3 SINE B2 -8 208 2 8 1244 264 280 71 53 chr4 86382126 86382239 -69247881 - PB1D7 SINE Alu -1 119 5 8 1244 1245 113 26 31 chr4 86382296 86382487 -69247633 - B2_Mm1t SINE B2 -3 190 1 8 1244 842 44 18 0 chr4 86382496 86382610 -69247510 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 8 1244 1596 199 101 70 chr4 86382672 86383057 -69247063 + Lx5 LINE L1 6401 7097 -363 8 1244 1116 54 0 45 chr4 86383057 86383211 -69246909 + B1_Mus2 SINE Alu 1 147 0 8 1244 1596 180 68 130 chr4 86383211 86383575 -69246545 + Lx5 LINE L1 6710 7050 0 8 1244 1374 76 5 11 chr4 86383667 86383854 -69246266 - B2_Mm2 SINE B2 -8 187 2 8 1244 3883 143 27 27 chr4 86383863 86384610 -69245510 - RMER6A LTR ERVK -9 747 1 8 1244 289 297 40 0 chr4 86384613 86384687 -69245433 - ID_B1 SINE B4 -67 157 81 8 1244 772 244 5 30 chr4 86385092 86385295 -69244825 - B3A SINE B2 0 198 1 8 1244 340 297 124 11 chr4 86385533 86385597 -69244523 + ID SINE ID 4 78 -146 8 1244 405 0 0 0 chr4 86385597 86385642 -69244478 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1244 340 297 124 11 chr4 86385642 86385754 -69244366 + ID_B1 SINE B4 79 200 -24 8 1244 1787 121 86 3 chr4 86385758 86385790 -69244330 - MT2B LTR ERVL -8 593 562 8 1244 210 71 0 0 chr4 86385790 86385818 -69244302 + (CATA)n Simple_repeat Simple_repeat 4 31 0 8 1244 1787 148 104 63 chr4 86385818 86386266 -69243854 - MT2B LTR ERVL -40 561 2 8 1244 204 40 0 0 chr4 86386518 86386543 -69243577 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 8 1244 408 162 40 0 chr4 86386554 86386628 -69243492 - B1_Mur2 SINE Alu -32 117 41 8 1244 329 255 51 76 chr4 86386760 86386917 -69243203 - MLT1F LTR MaLR -4 544 392 8 1244 583 112 7 29 chr4 86386997 86387135 -69242985 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 8 1244 366 280 50 57 chr4 86387135 86387225 -69242895 - ID_B1 SINE B4 -64 160 79 8 1244 180 77 0 0 chr4 86387225 86387251 -69242869 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 8 1244 366 280 50 57 chr4 86387251 86387319 -69242801 - ID SINE ID -146 78 3 8 1244 321 279 0 0 chr4 86387488 86387590 -69242530 - B1F2 SINE Alu -37 112 11 8 1244 286 274 87 10 chr4 86387612 86387715 -69242405 + B1F1 SINE Alu 25 135 -14 8 1244 21 0 0 0 chr4 86387719 86387740 -69242380 + AT_rich Low_complexity Low_complexity 1 21 0 8 1244 497 248 70 23 chr4 86387750 86387878 -69242242 + ID_B1 SINE B4 86 219 -5 8 1244 447 295 71 0 chr4 86387902 86388014 -69242106 + RSINE1 SINE B4 8 127 -38 8 1244 591 315 129 15 chr4 86388134 86388398 -69241722 + 7SK RNA RNA 16 309 -22 8 1244 278 194 14 0 chr4 86388423 86388495 -69241625 + C-rich Low_complexity Low_complexity 3 75 0 8 1244 1230 145 0 186 chr4 86388496 86388775 -69241345 + RMER19B LTR ERVK 1 227 -675 8 1244 2731 154 75 17 chr4 86388796 86389318 -69240802 + RMER19B LTR ERVK 339 890 -12 8 1244 538 214 0 0 chr4 86389342 86389445 -69240675 - ID_B1 SINE B4 -4 220 118 8 1244 901 128 68 37 chr4 86389602 86389764 -69240356 + MTC LTR MaLR 247 413 -8 8 1244 277 260 39 0 chr4 86390398 86390475 -69239645 - ID4 SINE ID -2 81 2 8 1244 672 186 8 8 chr4 86390485 86390604 -69239516 - PB1D9 SINE Alu 0 120 2 8 1244 388 259 50 25 chr4 86390744 86390863 -69239257 - B3 SINE B2 0 216 95 8 1244 450 280 32 83 chr4 86391022 86391178 -69238942 - Lx8 LINE L1 -147 7326 7179 8 1244 358 103 14 29 chr4 86391454 86391524 -69238596 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 8 1244 918 201 130 5 chr4 86391554 86391748 -69238372 - MTC LTR MaLR 0 421 203 8 1244 524 92 13 0 chr4 86391748 86391824 -69238296 + MTC LTR MaLR 1 77 -344 8 1244 2293 117 28 0 chr4 86391950 86392267 -69237853 - ORR1A3 LTR MaLR 0 326 1 8 1244 1218 75 0 14 chr4 86392505 86392653 -69237467 + B1_Mus1 SINE Alu 2 147 -1 8 1244 189 94 0 0 chr4 86392654 86392686 -69237434 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1244 1101 68 13 64 chr4 86393072 86393228 -69236892 - B1_Mus1 SINE Alu 0 148 1 8 1244 380 183 187 28 chr4 86393427 86393534 -69236586 + B1F1 SINE Alu 9 132 -17 8 1244 305 297 89 0 chr4 86393650 86393751 -69236369 + B3A SINE B2 1 110 -88 8 1244 621 0 0 0 chr4 86394104 86394173 -69235947 + (CAAAA)n Simple_repeat Simple_repeat 4 72 0 8 1244 476 248 41 34 chr4 86396994 86397140 -69232980 + B1_Mur2 SINE Alu 1 147 -2 8 1244 22 35 0 0 chr4 86397244 86397273 -69232847 + AT_rich Low_complexity Low_complexity 1 29 0 8 1244 288 190 69 0 chr4 86397289 86397347 -69232773 - PB1D9 SINE Alu -42 78 17 8 1244 335 266 116 11 chr4 86397450 86397545 -69232575 - ID_B1 SINE B4 -30 194 90 8 1244 405 331 73 0 chr4 86397897 86398033 -69232087 + ID_B1 SINE B4 77 222 -2 8 1244 586 299 29 0 chr4 86398037 86398174 -69231946 + RSINE1 SINE B4 3 143 -22 8 1244 215 151 18 36 chr4 86398176 86398231 -69231889 + A-rich Low_complexity Low_complexity 3 56 0 8 1244 530 240 47 28 chr4 86398245 86398352 -69231768 + PB1D10 SINE Alu 6 114 -3 9 1244 534 271 140 25 chr4 86398378 86398637 -69231483 + L1MC1 LINE L1 5988 6272 -61 9 1244 320 267 98 10 chr4 86398647 86398663 -69231457 - B4A SINE B4 -99 193 86 9 1244 370 207 24 12 chr4 86398663 86398746 -69231374 - B1F2 SINE Alu -65 84 1 9 1244 341 203 58 0 chr4 86398850 86398919 -69231201 - B3A SINE B2 -123 75 3 9 1244 527 229 161 50 chr4 86399243 86399404 -69230716 + B3 SINE B2 1 179 -37 9 1244 319 314 76 49 chr4 86399469 86399613 -69230507 - B1F SINE Alu -1 148 1 9 1244 572 276 25 13 chr4 86399888 86400046 -69230074 + RSINE1 SINE B4 4 163 -2 9 1244 336 143 0 0 chr4 86400330 86400400 -69229720 + (T)n Simple_repeat Simple_repeat 1 70 0 9 1244 1279 55 7 0 chr4 86400402 86400548 -69229572 - B1_Mus2 SINE Alu 0 147 1 9 1244 740 103 337 66 chr4 86400550 86400716 -69229404 - B3 SINE B2 -3 213 3 9 1244 244 133 0 82 chr4 86400722 86400771 -69229349 - PB1D7 SINE Alu 0 120 76 9 1244 4678 16 2 0 chr4 86400771 86401263 -69228857 + MT2_Mm LTR ERVL 1 493 0 9 1244 48182 16 7 0 chr4 86401263 86406585 -69223535 + MERVL-int LTR ERVL 1 5360 -125 9 1244 387 167 46 35 chr4 86406585 86406672 -69223448 + ORR1A3-int LTR MaLR 553 640 -1323 9 1244 322 0 0 0 chr4 86406672 86406710 -69223410 + MERVL-int LTR ERVL 5448 5485 0 9 1244 3920 18 123 0 chr4 86406710 86407149 -69222971 + MT2_Mm LTR ERVL 1 493 0 9 1244 350 202 47 81 chr4 86407245 86407331 -69222789 - PB1D9 SINE Alu -13 107 25 9 1244 252 0 0 0 chr4 86407335 86407363 -69222757 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1244 529 290 105 53 chr4 86407469 86407735 -69222385 - B4A SINE B4 -3 289 10 9 1244 722 271 39 0 chr4 86407759 86407914 -69222206 - RSINE1 SINE B4 -2 163 3 9 1244 868 216 107 45 chr4 86408136 86408498 -69221622 - RMER17C LTR ERVK 0 410 1 9 1244 1929 164 28 86 chr4 86408487 86408997 -69221123 - RMER10A LTR ERVL -1 441 1 9 1244 479 90 316 26 chr4 86409090 86409204 -69220916 - B2_Mm2 SINE B2 -2 193 47 9 1244 1327 108 23 0 chr4 86409270 86409446 -69220674 - B2_Mm2 SINE B2 -14 181 2 9 1244 517 196 65 0 chr4 86409670 86409777 -69220343 - B1_Mur4 SINE Alu -36 114 1 9 1244 1795 150 62 19 chr4 86409811 86410253 -69219867 - RMER17C LTR ERVK -519 439 16 9 1244 1043 159 26 21 chr4 86410294 86410487 -69219633 + B2_Mm2 SINE B2 2 195 0 9 1244 800 262 11 21 chr4 86410526 86410717 -69219403 - B3A SINE B2 0 198 10 9 1244 896 119 14 0 chr4 86410722 86410865 -69219255 - URR1A DNA MER1_type 0 226 82 9 1244 240 306 65 0 chr4 86410904 86411012 -69219108 - PB1D9 SINE Alu -5 115 1 9 1244 368 318 35 41 chr4 86411013 86411210 -69218910 - L1MB8 LINE L1 -116 6062 5867 9 1244 994 210 101 35 chr4 86411371 86411628 -69218492 + B4A SINE B4 1 274 -18 9 1244 21 0 0 31 chr4 86411688 86411702 -69218418 + AT_rich Low_complexity Low_complexity 1 14 0 9 1244 254 311 95 0 chr4 86411702 86411776 -69218344 - ID4_ SINE ID 0 83 3 9 1244 21 0 0 31 chr4 86411776 86411793 -69218327 + AT_rich Low_complexity Low_complexity 1 17 0 9 1244 324 178 0 0 chr4 86412096 86412169 -69217951 + CT-rich Low_complexity Low_complexity 1 73 0 9 1244 327 297 34 67 chr4 86412203 86412322 -69217798 - B1F1 SINE Alu -4 145 31 9 1244 1222 49 14 0 chr4 86412631 86412775 -69217345 - B1_Mus2 SINE Alu 0 147 2 9 1244 302 200 0 0 chr4 86412871 86412921 -69217199 + PB1D9 SINE Alu 3 52 -68 9 1244 269 197 0 15 chr4 86413144 86413211 -69216909 + GA-rich Low_complexity Low_complexity 2 67 0 9 1244 508 256 113 0 chr4 86413237 86413370 -69216750 + B1F SINE Alu 1 148 -1 9 1244 566 278 88 38 chr4 86413394 86413712 -69216408 + L1M2 LINE L1 5495 5834 -340 9 1244 672 294 22 38 chr4 86413841 86414025 -69216095 + B3A SINE B2 2 182 -16 9 1244 1246 48 7 0 chr4 86414039 86414184 -69215936 - B1_Mus2 SINE Alu 0 147 2 9 1244 976 232 29 5 chr4 86414204 86414412 -69215708 - B3 SINE B2 -3 213 1 9 1244 1405 102 0 26 chr4 86414445 86414637 -69215483 - B2_Mm2 SINE B2 -8 187 1 9 1244 605 204 10 0 chr4 86414659 86414762 -69215358 + B1F2 SINE Alu 40 143 -6 9 1244 36 70 0 0 chr4 86415207 86415278 -69214842 + AT_rich Low_complexity Low_complexity 1 71 0 9 1244 1062 182 98 16 chr4 86415278 86415462 -69214658 - B3 SINE B2 -14 202 4 9 1244 675 125 208 0 chr4 86415787 86415907 -69214213 + B1_Mus2 SINE Alu 2 146 -1 9 1244 266 252 67 79 chr4 86416059 86416235 -69213885 - MIRb SINE MIR -8 260 71 9 1244 685 263 72 102 chr4 86416909 86417214 -69212906 + Lx8 LINE L1 7144 7439 -34 9 1244 2103 128 125 0 chr4 86417228 86417571 -69212549 - ORR1B1 LTR MaLR -8 386 1 9 1244 342 67 0 0 chr4 86417737 86417782 -69212338 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 9 1244 278 265 60 0 chr4 86417783 86417866 -69212254 - PB1D9 SINE Alu -14 106 19 9 1244 655 150 16 4 chr4 86417830 86417946 -69212174 - B2_Mm2 SINE B2 -61 155 32 9 1244 235 0 0 54 chr4 86417950 86417987 -69212133 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1244 3358 58 29 5 chr4 86417990 86418406 -69211714 - L1_Mus1 LINE L1 0 6567 6142 9 1244 1330 34 0 0 chr4 86418418 86418565 -69211555 - B1_Mus2 SINE Alu 0 147 1 9 1244 1298 168 10 0 chr4 86418613 86418815 -69211305 - B3 SINE B2 -11 205 2 9 1244 498 331 129 6 chr4 86418822 86418840 -69211280 - B3A SINE B2 -5 193 177 9 1244 251 104 21 0 chr4 86418840 86418888 -69211232 + (TATG)n Simple_repeat Simple_repeat 2 50 0 9 1244 599 304 98 0 chr4 86418888 86419039 -69211081 - B3 SINE B2 -22 176 3 9 1244 471 237 28 56 chr4 86419058 86419201 -69210919 + B1_Mur1 SINE Alu 6 144 -5 9 1244 340 106 45 0 chr4 86419202 86419268 -69210852 + (CATA)n Simple_repeat Simple_repeat 2 70 0 9 1244 1769 36 0 0 chr4 86419402 86419594 -69210526 - B2_Mm1t SINE B2 0 193 2 9 1244 467 320 39 19 chr4 86419643 86419799 -69210321 - RSINE1 SINE B4 -5 160 2 9 1244 407 248 99 0 chr4 86419809 86419910 -69210210 - PB1D7 SINE Alu -8 112 2 9 1244 22 70 0 0 chr4 86420554 86420597 -69209523 + AT_rich Low_complexity Low_complexity 1 43 0 9 1244 682 115 10 0 chr4 86420659 86420763 -69209357 - B2_Mm2 SINE B2 -89 106 2 9 1244 678 240 8 0 chr4 86420913 86421038 -69209082 + ID_B1 SINE B4 90 215 -9 9 1244 517 255 23 90 chr4 86421090 86421149 -69208971 + ID SINE ID 34 80 -144 9 1244 571 234 8 0 chr4 86421149 86421273 -69208847 + B1_Mus1 SINE Alu 1 125 -23 9 1244 324 226 0 0 chr4 86421273 86421335 -69208785 + B1_Mm SINE Alu 67 128 -19 9 1244 676 195 57 0 chr4 86421385 86421508 -69208612 + B3 SINE B2 1 130 -86 9 1244 1269 41 0 14 chr4 86421580 86421728 -69208392 - B1_Mus2 SINE Alu -1 146 1 9 1244 459 0 0 0 chr4 86422041 86422092 -69208028 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1244 236 276 53 0 chr4 86422293 86422369 -69207751 - L1MD3 LINE L1 -15 7980 7901 9 1244 38 39 0 0 chr4 86422378 86422430 -69207690 + AT_rich Low_complexity Low_complexity 1 52 0 9 1244 384 191 15 0 chr4 86422481 86422549 -69207571 - B3 SINE B2 -146 70 2 9 1244 606 196 0 104 chr4 86422563 86422688 -69207432 - PB1D9 SINE Alu -7 113 2 9 1244 23 0 0 0 chr4 86422752 86422775 -69207345 + AT_rich Low_complexity Low_complexity 1 23 0 9 1244 518 263 29 50 chr4 86422836 86422976 -69207144 - RSINE1 SINE B4 -14 151 15 9 1244 252 0 0 0 chr4 86422992 86423020 -69207100 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 9 1244 329 281 22 0 chr4 86423020 86423109 -69207011 - B1F SINE Alu -12 137 47 9 1244 415 171 45 0 chr4 86423169 86423252 -69206868 - B1F2 SINE Alu -34 115 31 9 1244 451 248 25 33 chr4 86424322 86424443 -69205677 + ID_B1 SINE B4 99 218 -6 9 1244 522 253 38 45 chr4 86424728 86424885 -69205235 - RSINE1 SINE B4 -8 157 2 9 1244 815 262 36 45 chr4 86425101 86425325 -69204795 - ID_B1 SINE B4 -1 223 2 9 1244 798 183 0 8 chr4 86425361 86425493 -69204627 - B1_Mur4 SINE Alu -15 135 5 9 1244 400 267 8 49 chr4 86425494 86425616 -69204504 - PB1D10 SINE Alu 0 117 1 9 1244 240 35 0 0 chr4 86427149 86427178 -69202942 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1244 283 137 0 89 chr4 86427178 86427234 -69202886 - B1_Mur4 SINE Alu 0 150 100 9 1244 21 57 0 0 chr4 86427299 86427334 -69202786 + AT_rich Low_complexity Low_complexity 1 35 0 9 1244 565 192 20 0 chr4 86427916 86428015 -69202105 + B1_Mur2 SINE Alu 38 138 -11 9 1244 279 0 0 0 chr4 86428015 86428046 -69202074 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1244 574 96 346 0 chr4 86428168 86428272 -69201848 - B2_Mm2 SINE B2 -32 163 24 9 1244 657 199 99 0 chr4 86428377 86428508 -69201612 + B1_Mur1 SINE Alu 6 149 0 9 1244 401 250 11 0 chr4 86428597 86428685 -69201435 - B4A SINE B4 -199 93 5 9 1244 210 270 92 31 chr4 86429248 86429307 -69200813 + ID4 SINE ID 12 75 -8 9 1244 1858 54 11 80 chr4 86429307 86429569 -69200551 + L1_Mus2 LINE L1 6321 6564 -2 9 1244 728 142 118 0 chr4 86429600 86429727 -69200393 - ORR1C1 LTR MaLR -236 142 1 9 1244 1384 275 119 46 chr4 86429729 86430468 -69199652 + L1MB4 LINE L1 5332 6124 -56 9 1244 1114 75 0 120 chr4 86430549 86430649 -69199471 - B1_Mus2 SINE Alu 0 147 60 1 1244 1577 42 0 54 chr4 86430649 86430852 -69199268 + B2_Mm2 SINE B2 1 192 -3 1 1244 1114 75 0 120 chr4 86430852 86430918 -69199202 - B1_Mus2 SINE Alu -88 59 1 1 1244 521 321 49 78 chr4 86430957 86431200 -69198920 + B4 SINE B4 3 238 -54 1 1244 376 297 83 51 chr4 86431400 86431556 -69198564 - RSINE1 SINE B4 0 165 5 1 1244 213 159 0 0 chr4 86431580 86431624 -69198496 + (TTCTG)n Simple_repeat Simple_repeat 2 45 0 1 1244 215 294 0 0 chr4 86431816 86431867 -69198253 + ID4 SINE ID 22 72 -11 1 1244 234 0 0 0 chr4 86432707 86432733 -69197387 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1244 254 250 122 24 chr4 86432734 86432816 -69197304 - PB1D7 SINE Alu -13 107 18 1 1244 733 254 118 5 chr4 86432834 86433020 -69197100 + B3 SINE B2 1 207 -9 1 1244 760 233 20 46 chr4 86433082 86433235 -69196885 - RSINE1 SINE B4 -14 151 3 1 1244 256 94 0 0 chr4 86433659 86433712 -69196408 - B2_Mm1t SINE B2 0 193 141 1 1244 313 131 16 35 chr4 86433704 86433768 -69196352 - B2_Mm2 SINE B2 -107 109 50 1 1244 1386 92 11 0 chr4 86433826 86434000 -69196120 - B2_Mm1t SINE B2 -14 179 4 1 1244 684 188 17 8 chr4 86434076 86434194 -69195926 - PB1D9 SINE Alu 0 120 2 1 1244 523 221 169 29 chr4 86434217 86434389 -69195731 - B3 SINE B2 -1 215 20 1 1244 575 233 45 8 chr4 86434449 86434583 -69195537 - B1F SINE Alu -1 148 10 1 1244 249 33 0 0 chr4 86435875 86435905 -69194215 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1 1244 395 296 9 9 chr4 86436029 86436138 -69193982 + PB1D10 SINE Alu 1 109 -8 1 1244 932 291 28 41 chr4 86436338 86436628 -69193492 + B4 SINE B4 3 288 -4 1 1244 185 327 129 6 chr4 86436760 86436923 -69193197 + L2a LINE L2 2654 2836 -583 1 1244 678 327 54 18 chr4 86437632 86437912 -69192208 - RMER15 LTR ERVL -13 562 273 1 1244 369 0 0 0 chr4 86438096 86438137 -69191983 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1244 273 326 11 22 chr4 86438495 86438507 -69191613 - B4A SINE B4 -200 92 3 1 1244 295 178 51 76 chr4 86438507 86438586 -69191534 - B3A SINE B2 -119 79 3 1 1244 414 0 0 0 chr4 86438611 86438657 -69191463 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1244 737 293 35 0 chr4 86438659 86438833 -69191287 - B3A SINE B2 -18 180 1 1 1244 416 265 79 29 chr4 86438841 86438981 -69191139 - B1F SINE Alu 0 149 3 1 1244 185 240 26 13 chr4 86439099 86439175 -69190945 + L2a LINE L2 3224 3300 -126 1 1244 364 267 137 80 chr4 86439198 86439373 -69190747 + MER58A DNA MER1_type 25 209 -15 1 1244 194 340 42 21 chr4 86439376 86439472 -69190648 + L2a LINE L2 3302 3399 -27 1 1244 1039 194 54 10 chr4 86439829 86440032 -69190088 - B3 SINE B2 -4 212 1 1 1244 398 120 13 0 chr4 86440168 86440243 -69189877 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1244 606 260 99 17 chr4 86440246 86440418 -69189702 - B4 SINE B4 -25 267 82 1 1244 26 0 0 0 chr4 86440541 86440567 -69189553 + AT_rich Low_complexity Low_complexity 1 26 0 1 1244 531 211 19 0 chr4 86441334 86441438 -69188682 + PB1D9 SINE Alu 10 115 -5 1 1244 759 243 116 5 chr4 86441450 86441640 -69188480 + ID_B1 SINE B4 2 212 -12 1 1244 395 248 117 25 chr4 86441755 86441875 -69188245 + ID_B1 SINE B4 88 218 -6 1 1244 436 205 0 43 chr4 86441793 86441885 -69188235 + B1F SINE Alu 62 149 0 1 1244 252 304 0 0 chr4 86442065 86442134 -69187986 - ID4_ SINE ID -13 70 2 1 1244 546 191 66 73 chr4 86442139 86442275 -69187845 - ID_B1 SINE B4 -3 221 87 1 1244 304 318 9 18 chr4 86442384 86442493 -69187627 - MIR SINE MIR -103 159 52 1 1244 1518 57 6 0 chr4 86442531 86442708 -69187412 - B2_Mm2 SINE B2 -17 178 1 1 1244 439 313 76 0 chr4 86442850 86442981 -69187139 - B1F2 SINE Alu -8 141 1 1 1244 339 259 97 18 chr4 86443038 86443152 -69186968 - L1MEd LINE L1 -5488 631 509 1 1244 192 111 0 0 chr4 86444156 86444192 -69185928 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1244 238 215 157 70 chr4 86444226 86444341 -69185779 - B2_Mm2 SINE B2 -70 125 1 1 1244 396 299 122 7 chr4 86444595 86444743 -69185377 - ID_B1 SINE B4 -58 166 2 1 1244 275 278 0 14 chr4 86444850 86444923 -69185197 + PB1D10 SINE Alu 25 96 -21 1 1244 273 119 0 0 chr4 86444923 86444965 -69185155 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1244 237 65 0 0 chr4 86445000 86445031 -69185089 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 1244 1225 54 0 0 chr4 86445033 86445180 -69184940 - B1_Mm SINE Alu 0 147 1 1 1244 249 264 209 0 chr4 86446258 86446387 -69183733 - MER33 DNA MER1_type -5 319 164 1 1244 1227 87 87 0 chr4 86446389 86446561 -69183559 - B2_Mm2 SINE B2 -8 187 1 1 1244 917 35 0 0 chr4 86446578 86446692 -69183428 - B1_Mus2 SINE Alu 0 147 34 1 1244 247 296 94 23 chr4 86446715 86446843 -69183277 - MER33 DNA MER1_type -165 159 23 1 1244 370 281 25 8 chr4 86446927 86447049 -69183071 + CT-rich Low_complexity Low_complexity 1 124 0 1 1244 674 221 25 0 chr4 86447256 86447378 -69182742 + B1F2 SINE Alu 17 141 -8 1 1244 712 286 24 12 chr4 86447378 86447544 -69182576 + B3A SINE B2 5 172 -26 1 1244 309 26 0 0 chr4 86447545 86447583 -69182537 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1244 752 175 14 20 chr4 86448421 86448567 -69181553 - B1_Mur3 SINE Alu 0 149 5 1 1244 1203 48 0 0 chr4 86449135 86449282 -69180838 + B1_Mus2 SINE Alu 1 147 0 1 1244 1590 31 0 21 chr4 86449392 86449586 -69180534 + B2_Mm1a SINE B2 1 190 -3 1 1244 1284 114 10 0 chr4 86449601 86449794 -69180326 + B2_Mm2 SINE B2 1 195 0 1 1244 1121 57 19 19 chr4 86449795 86449956 -69180164 + B2_Mm1t SINE B2 27 187 -6 1 1244 333 264 43 32 chr4 86450053 86450147 -69179973 - ID_B1 SINE B4 -3 221 127 1 1244 505 232 68 61 chr4 86450204 86450351 -69179769 - B1F2 SINE Alu 0 149 2 1 1244 568 254 45 0 chr4 86450590 86450724 -69179396 + B1F1 SINE Alu 1 140 -9 1 1244 628 258 66 59 chr4 86450837 86451125 -69178995 - B4A SINE B4 -1 291 2 1 1244 209 159 23 0 chr4 86451135 86451179 -69178941 + CT-rich Low_complexity Low_complexity 2 46 0 1 1244 23 0 0 0 chr4 86451202 86451225 -69178895 + AT_rich Low_complexity Low_complexity 1 23 0 1 1244 21 0 0 0 chr4 86452087 86452108 -69178012 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 39 22 0 0 chr4 86453201 86453247 -69176873 + AT_rich Low_complexity Low_complexity 1 46 0 1 1244 700 234 29 21 chr4 86453664 86453799 -69176321 + B1_Mur1 SINE Alu 3 139 -10 1 1244 3006 45 37 3 chr4 86453799 86454177 -69175943 + L1Md_F2 LINE L1 6192 6582 0 1 1244 465 176 30 37 chr4 86454192 86454296 -69175824 + B1_Mus1 SINE Alu 1 78 -70 1 1244 1217 286 95 50 chr4 86454298 86455024 -69175096 - L1MB7 LINE L1 -13 6171 5413 1 1244 302 279 81 16 chr4 86455456 86455580 -69174540 + RSINE1 SINE B4 30 161 -4 1 1244 941 181 100 17 chr4 86455579 86455809 -69174311 - RCHARR1 DNA MER1_type -277 697 449 1 1244 958 279 51 40 chr4 86455816 86456014 -69174106 + B4 SINE B4 17 218 -74 1 1244 228 67 0 0 chr4 86456014 86456044 -69174076 + (CAGAA)n Simple_repeat Simple_repeat 1 30 0 1 1244 958 279 51 40 chr4 86456044 86456118 -69174002 + B4 SINE B4 219 292 0 1 1244 520 339 77 50 chr4 86456149 86456273 -69173847 - RCHARR1 DNA MER1_type -536 438 313 1 1244 1179 55 7 0 chr4 86456273 86456419 -69173701 + B1_Mus2 SINE Alu 1 147 0 1 1244 520 339 77 50 chr4 86456419 86456633 -69173487 - RCHARR1 DNA MER1_type -662 312 92 1 1244 794 278 133 100 chr4 86456634 86457137 -69172983 + Lx6 LINE L1 6535 7434 -26 1 1244 371 222 13 21 chr4 86457647 86457739 -69172381 + B1F SINE Alu 5 91 -58 1 1244 308 292 52 10 chr4 86458032 86458129 -69171991 - ID_B1 SINE B4 -2 222 122 1 1244 998 218 330 32 chr4 86458461 86458813 -69171307 - L1MA8 LINE L1 -24 6267 5818 1 1244 183 42 0 0 chr4 86458813 86458837 -69171283 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1244 998 249 178 44 chr4 86458837 86459103 -69171017 - L1MA8 LINE L1 -474 5817 5508 1 1244 28 0 0 0 chr4 86459129 86459157 -69170963 + AT_rich Low_complexity Low_complexity 1 28 0 1 1244 221 288 229 9 chr4 86459157 86459262 -69170858 - RSINE1 SINE B4 -35 130 3 1 1244 181 148 0 0 chr4 86460360 86460387 -69169733 - L2c LINE L2 -81 3306 3280 1 1244 1715 21 0 0 chr4 86461032 86461224 -69168896 - B2_Mm1t SINE B2 0 193 2 1 1244 698 159 146 52 chr4 86461302 86461494 -69168626 - B3 SINE B2 -6 210 1 1 1244 688 268 85 10 chr4 86461828 86462028 -69168092 - B3 SINE B2 0 216 2 1 1244 395 313 97 32 chr4 86462359 86462514 -69167606 - RSINE1 SINE B4 0 165 1 1 1244 318 164 36 0 chr4 86462630 86462685 -69167435 - PB1D9 SINE Alu -24 96 40 1 1244 322 249 186 41 chr4 86462728 86463121 -69166999 - L1MC4a LINE L1 -499 7543 7094 1 1244 311 355 20 55 chr4 86463359 86463505 -69166615 - L1MC4a LINE L1 -1075 6807 6667 1 1244 209 222 0 0 chr4 86463547 86463592 -69166528 + T-rich Low_complexity Low_complexity 1 45 0 1 1244 22 35 0 0 chr4 86463645 86463674 -69166446 + AT_rich Low_complexity Low_complexity 1 29 0 1 1244 403 231 221 8 chr4 86464846 86464968 -69165152 + B1F1 SINE Alu 1 148 -1 1 1244 324 318 160 31 chr4 86465119 86465437 -69164683 - L1MC4a LINE L1 -1572 6310 5952 1 1244 1412 56 56 0 chr4 86466000 86466178 -69163942 - B2_Mm2 SINE B2 -6 189 2 1 1244 238 250 78 67 chr4 86466313 86466327 -69163793 - B1F SINE Alu -54 95 5 1 1244 246 278 0 53 chr4 86466327 86466403 -69163717 - ID_B1 SINE B4 -67 157 86 1 1244 806 105 100 50 chr4 86466880 86467040 -69163080 + B2_Mm2 SINE B2 2 169 -26 1 1244 342 287 19 0 chr4 86467614 86467722 -69162398 + MER2 DNA MER2_type 191 300 -45 1 1244 210 256 0 0 chr4 86468108 86468147 -69161973 + B1F2 SINE Alu 3 41 -108 1 1244 255 299 15 0 chr4 86468144 86468211 -69161909 - MLT1A0 LTR MaLR -209 156 89 1 1244 301 273 121 0 chr4 86468289 86468388 -69161732 - B1F SINE Alu -1 148 38 1 1244 583 271 14 35 chr4 86468437 86468582 -69161538 - RSINE1 SINE B4 -21 144 3 1 1244 306 233 0 85 chr4 86468582 86468600 -69161520 - PB1D10 SINE Alu -1 116 31 1 1244 318 270 0 26 chr4 86468600 86468676 -69161444 - ID_B1 SINE B4 -39 185 112 1 1244 374 237 60 30 chr4 86468747 86468885 -69161235 + B3 SINE B2 1 208 -8 1 1244 536 211 7 0 chr4 86468893 86469035 -69161085 + (TA)n Simple_repeat Simple_repeat 2 144 0 1 1244 387 0 0 0 chr4 86469035 86469078 -69161042 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1244 756 222 36 108 chr4 86469153 86469375 -69160745 + B3 SINE B2 5 210 -6 1 1244 793 176 13 20 chr4 86469419 86469570 -69160550 + B1_Mur4 SINE Alu 1 150 0 1 1244 225 94 0 0 chr4 86469779 86469811 -69160309 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1244 235 225 0 0 chr4 86469971 86470011 -69160109 - ID4_ SINE ID -40 43 4 1 1244 514 62 300 58 chr4 86470123 86470243 -69159877 - B2_Mm2 SINE B2 0 195 47 1 1244 1250 102 11 0 chr4 86470286 86470462 -69159658 - B2_Mm1t SINE B2 -14 179 2 1 1244 684 262 0 28 chr4 86472177 86472322 -69157798 + ID_B1 SINE B4 84 224 0 1 1244 968 175 113 0 chr4 86472327 86472521 -69157599 + B3 SINE B2 1 216 0 1 1244 1507 43 21 0 chr4 86474985 86475171 -69154949 - B2_Mm1a SINE B2 -2 191 2 1 1244 660 194 71 5 chr4 86475757 86475939 -69154181 + B4A SINE B4 2 224 -68 1 1244 5853 83 29 93 chr4 86475974 86476928 -69153192 - RLTR13B1 LTR ERVK 0 893 1 1 1244 421 179 67 0 chr4 86476931 86477026 -69153094 + PB1D9 SINE Alu 18 120 0 1 1244 346 339 98 12 chr4 86477026 86477104 -69153016 + B4A SINE B4 103 290 -2 1 1244 210 244 0 0 chr4 86477104 86477149 -69152971 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 1244 220 243 187 13 chr4 86477244 86477319 -69152801 + BC1_Mm scRNA scRNA 1 88 -64 1 1244 217 351 39 0 chr4 86477428 86477505 -69152615 - ID4 SINE ID -3 80 1 1 1244 25 31 0 0 chr4 86477559 86477591 -69152529 + AT_rich Low_complexity Low_complexity 1 32 0 1 1244 229 250 0 138 chr4 86477593 86477658 -69152462 - RSINE1 SINE B4 -4 161 106 1 1244 320 266 61 40 chr4 86477695 86477825 -69152295 - RSINE1 SINE B4 -148 144 1 1 1244 232 242 15 0 chr4 86477830 86477896 -69152224 - L1MCa LINE L1 -4123 2385 2319 1 1244 931 216 41 5 chr4 86478185 86478380 -69151740 - B3 SINE B2 -6 210 9 1 1244 331 346 49 27 chr4 86478429 86478613 -69151507 - HAL1 LINE L1 -893 1614 1427 1 1244 1033 101 124 0 chr4 86478666 86478835 -69151285 - B2_Mm2 SINE B2 -4 191 2 1 1244 228 35 0 0 chr4 86479525 86479554 -69150566 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1244 969 9 0 0 chr4 86479932 86480042 -69150078 + (TC)n Simple_repeat Simple_repeat 2 111 0 1 1244 609 72 0 45 chr4 86480042 86480130 -69149990 - BC1_Mm scRNA scRNA -68 84 1 1 1244 524 277 130 74 chr4 86480120 86480389 -69149731 - MLT1F2 LTR MaLR -274 286 3 1 1244 428 359 71 10 chr4 86480554 86480751 -69149369 - MLT2F LTR ERVL -239 424 216 1 1244 342 302 84 39 chr4 86480887 86481042 -69149078 - L1ME2 LINE L1 -19 6145 5984 1 1244 345 258 0 0 chr4 86481244 86481310 -69148810 - PB1D10 SINE Alu -10 107 42 1 1244 778 221 70 25 chr4 86481313 86481513 -69148607 - B3 SINE B2 -7 209 1 1 1244 557 223 7 71 chr4 86481757 86481897 -69148223 + B1_Mur1 SINE Alu 10 140 -9 1 1244 747 136 129 0 chr4 86481910 86482042 -69148078 + B1_Mur4 SINE Alu 1 149 -1 1 1244 559 265 20 20 chr4 86482078 86482228 -69147892 - RSINE1 SINE B4 -1 164 15 1 1244 925 76 233 6 chr4 86483004 86483163 -69146957 - B2_Mm2 SINE B2 0 195 1 1 1244 1043 272 47 7 chr4 86483661 86483935 -69146185 + B4A SINE B4 4 288 -4 1 1244 565 273 14 0 chr4 86484043 86484182 -69145938 - B1F2 SINE Alu -8 141 1 1 1244 383 225 0 0 chr4 86484212 86484283 -69145837 - PB1D9 SINE Alu -14 106 36 1 1244 444 316 100 42 chr4 86484320 86484561 -69145559 - L1MC5 LINE L1 -101 7860 7606 1 1244 36 53 0 0 chr4 86484790 86484847 -69145273 + AT_rich Low_complexity Low_complexity 1 57 0 1 1244 323 128 11 143 chr4 86484980 86485071 -69145049 + RLTR25A LTR ERVK 504 582 -521 1 1244 784 30 0 29 chr4 86485005 86485108 -69145012 + B1_Mm SINE Alu 47 146 -1 1 1244 228 266 128 0 chr4 86485161 86485255 -69144865 - B1_Mur4 SINE Alu 0 150 45 1 1244 316 381 49 34 chr4 86485970 86486174 -69143946 - MLT1J LTR MaLR -208 304 98 1 1244 1359 87 22 0 chr4 86486189 86486372 -69143748 - B2_Mm2 SINE B2 -7 188 2 1 1244 248 348 99 7 chr4 86486401 86486543 -69143577 - MIRb SINE MIR -85 183 29 1 1244 1129 89 0 0 chr4 86487037 86487183 -69142937 + B1_Mus1 SINE Alu 2 147 -1 1 1244 377 243 93 37 chr4 86487212 86487319 -69142801 + PB1D9 SINE Alu 1 113 -7 1 1244 1316 77 44 0 chr4 86487327 86487509 -69142611 - B2_Mm2 SINE B2 -3 192 3 1 1244 293 165 190 90 chr4 86487529 86487629 -69142491 + MT2B LTR ERVL 169 278 -323 1 1244 666 123 123 0 chr4 86487541 86487655 -69142465 + B1_Mur3 SINE Alu 21 148 -1 1 1244 337 296 206 8 chr4 86487703 86487829 -69142291 + RSINE1 SINE B4 7 157 -8 1 1244 396 0 0 0 chr4 86487838 86487882 -69142238 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1244 270 0 0 0 chr4 86487990 86488020 -69142100 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1244 429 158 0 0 chr4 86488213 86488295 -69141825 + (TCCA)n Simple_repeat Simple_repeat 2 83 0 1 1244 825 203 0 0 chr4 86488570 86488713 -69141407 - B1_Mur4 SINE Alu -7 143 1 1 1244 1404 65 48 5 chr4 86489204 86489391 -69140729 + B2_Mm2 SINE B2 1 195 0 1 1244 543 244 43 36 chr4 86489438 86489578 -69140542 + B1F SINE Alu 1 141 -8 1 1244 753 131 82 0 chr4 86490234 86490356 -69139764 - B1_Mur4 SINE Alu -10 140 9 1 1244 375 279 78 85 chr4 86490356 86490375 -69139745 - B4 SINE B4 -76 216 77 1 1244 2705 187 81 30 chr4 86490937 86490961 -69139159 - RMER1B Other Other -1 1065 1035 1 1244 603 0 0 0 chr4 86490961 86491028 -69139092 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1244 2705 202 82 44 chr4 86491028 86491743 -69138377 - RMER1B Other Other -32 1034 116 1 1244 1574 47 16 0 chr4 86491818 86492009 -69138111 + B2_Mm2 SINE B2 1 194 -1 1 1244 461 267 85 38 chr4 86492011 86492296 -69137824 - RLTR15 LTR ERVK -75 284 48 1 1244 782 210 0 14 chr4 86492768 86492913 -69137207 - B1_Mur1 SINE Alu 0 149 7 1 1244 387 241 0 0 chr4 86493185 86493264 -69136856 - PB1D10 SINE Alu -36 81 3 1 1244 478 277 51 0 chr4 86493645 86493782 -69136338 + B1F SINE Alu 2 145 -4 1 1244 291 28 0 0 chr4 86493977 86494013 -69136107 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1244 268 253 40 0 chr4 86494032 86494107 -69136013 + BC1_Mm scRNA scRNA 20 97 -55 1 1244 369 295 81 88 chr4 86494089 86494249 -69135871 + MTEb LTR MaLR 164 322 -57 1 1244 215 271 59 101 chr4 86494281 86494400 -69135720 + PB1D10 SINE Alu 1 114 -3 1 1244 448 216 11 0 chr4 86494416 86494504 -69135616 + RSINE1 SINE B4 54 142 -23 1 1244 307 177 60 48 chr4 86495660 86495743 -69134377 + PB1D9 SINE Alu 26 109 -11 1 1244 478 187 13 0 chr4 86495760 86495835 -69134285 + ID4 SINE ID 5 80 -3 1 1244 195 42 0 0 chr4 86496578 86496602 -69133518 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1244 244 191 16 0 chr4 86496750 86496763 -69133357 + (TTTG)n Simple_repeat Simple_repeat 1 14 0 1 1244 590 212 121 0 chr4 86496763 86496895 -69133225 - B1_Mus1 SINE Alu 0 148 1 1 1244 244 191 16 0 chr4 86496895 86496930 -69133190 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1244 1235 35 7 0 chr4 86496930 86497075 -69133045 - B1_Mm SINE Alu -1 146 1 1 1244 244 191 16 0 chr4 86497075 86497088 -69133032 + (TTTG)n Simple_repeat Simple_repeat 1 13 0 1 1244 1901 192 111 20 chr4 86497208 86497805 -69132315 + Lx5 LINE L1 5936 6673 -377 1 1244 1184 179 175 43 chr4 86497805 86498221 -69131899 - RMER6A LTR ERVK 0 756 183 1 1244 726 130 113 0 chr4 86498221 86498336 -69131784 + B2_Mm2 SINE B2 2 129 -66 1 1244 342 0 0 0 chr4 86498355 86498393 -69131727 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1244 1126 43 50 0 chr4 86498393 86498532 -69131588 - B1_Mm SINE Alu 0 147 2 1 1244 805 128 24 0 chr4 86498601 86498726 -69131394 + B3 SINE B2 3 130 -86 1 1244 241 204 0 53 chr4 86499283 86499340 -69130780 + B1F1 SINE Alu 85 138 -11 1 1244 457 239 83 0 chr4 86499859 86499968 -69130152 + B1_Mus2 SINE Alu 22 139 -8 1 1244 273 342 53 0 chr4 86503917 86504031 -69126089 - B1_Mur2 SINE Alu 0 149 30 1 1244 271 262 38 0 chr4 86504031 86504111 -69126009 - L1MB2 LINE L1 -235 5936 5854 2 1244 195 222 0 0 chr4 86504132 86504177 -69125943 + (CG)n Simple_repeat Simple_repeat 2 46 0 3 1244 767 216 28 28 chr4 86504196 86504403 -69125717 - B3 SINE B2 -4 191 1 4 1244 484 305 23 0 chr4 86504443 86504571 -69125549 + B1F1 SINE Alu 10 140 -9 5 1244 432 254 52 67 chr4 86504629 86504764 -69125356 - ID_B1 SINE B4 -13 211 79 6 1244 430 277 43 26 chr4 86504818 86504933 -69125187 - PB1 SINE Alu -1 126 10 7 1244 1141 75 7 0 chr4 86505107 86505253 -69124867 - B1_Mus1 SINE Alu 0 148 2 8 1244 264 326 11 11 chr4 86505299 86505392 -69124728 + PB1D10 SINE Alu 22 114 -3 9 1244 437 224 38 34 chr4 86505458 86505606 -69124514 + B1_Mur3 SINE Alu 1 147 -2 1 1244 216 326 43 33 chr4 86505842 86505934 -69124186 + ID_B1 SINE B4 91 183 -41 1 1244 582 269 202 22 chr4 86505949 86506177 -69123943 - MER2 DNA MER2_type -16 329 61 1 1244 384 234 34 51 chr4 86506228 86506345 -69123775 + ID_B1 SINE B4 82 196 -28 1 1244 547 261 26 9 chr4 86506364 86506480 -69123640 + B1F SINE Alu 1 118 -31 1 1244 441 0 0 0 chr4 86506550 86506599 -69123521 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1244 501 32 0 0 chr4 86506599 86506661 -69123459 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1244 654 319 18 18 chr4 86506714 86506725 -69123395 - B4A SINE B4 -86 206 196 1 1244 4334 195 51 1 chr4 86506725 86507516 -69122604 - Lx5 LINE L1 0 7050 6221 1 155 654 322 16 21 chr4 86507516 86507671 -69122449 - B4A SINE B4 -97 195 51 1 1245 435 71 0 0 chr4 86507671 86507727 -69122393 + RMER6B LTR ERVK 1 56 -405 1 1245 1351 118 95 13 chr4 86507729 86507961 -69122159 + RMER6B LTR ERVK 211 461 0 1 1245 900 196 55 80 chr4 86508197 86508397 -69121723 - B3A SINE B2 0 198 4 2 1245 602 291 7 13 chr4 86508436 86508586 -69121534 - RSINE1 SINE B4 -1 164 16 2 1245 569 223 116 0 chr4 86508624 86508745 -69121375 - B1_Mus2 SINE Alu -12 135 1 2 1245 1282 172 173 11 chr4 86508758 86509111 -69121009 + RMER17C LTR ERVK 1 410 0 2 1245 271 225 28 0 chr4 86509124 86509195 -69120925 + L1MCa LINE L1 1726 1798 -4710 2 1245 355 312 18 0 chr4 86509243 86509355 -69120765 - PB1D10 SINE Alu -3 114 1 2 1245 231 36 0 0 chr4 86509361 86509389 -69120731 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2 1245 315 242 190 2 chr4 86509395 86509480 -69120640 - B1_Mur4 SINE Alu -51 99 1 2 1245 536 77 13 0 chr4 86509513 86509591 -69120529 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1245 231 357 10 58 chr4 86509594 86509698 -69120422 + B1F SINE Alu 1 99 -50 2 1245 1207 84 84 0 chr4 86509972 86510151 -69119969 + B2_Mm2 SINE B2 2 195 0 3 1245 358 256 24 0 chr4 86510198 86510280 -69119840 - B1_Mur1 SINE Alu -1 148 65 3 1245 641 220 38 65 chr4 86510274 86510431 -69119689 + B3 SINE B2 33 191 -25 3 1245 1104 114 114 0 chr4 86510431 86510598 -69119522 + B2_Mm1t SINE B2 2 187 -6 3 1245 641 220 38 65 chr4 86510598 86510625 -69119495 + B3 SINE B2 192 212 -4 3 1245 507 181 359 6 chr4 86510684 86510840 -69119280 + B3 SINE B2 2 212 -4 3 1245 423 0 0 0 chr4 86510979 86511026 -69119094 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1245 636 213 35 28 chr4 86511154 86511299 -69118821 - B1_Mur1 SINE Alu -1 148 3 3 1245 309 26 0 0 chr4 86511305 86511343 -69118777 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1245 652 160 158 16 chr4 86511371 86511498 -69118622 - B1_Mur2 SINE Alu 0 149 5 3 1245 372 293 116 43 chr4 86512189 86512396 -69117724 - L1MC5 LINE L1 -31 7930 7709 3 1245 243 271 97 0 chr4 86512653 86512751 -69117369 - L1MD3 LINE L1 -177 6002 5894 4 1245 364 210 56 74 chr4 86512795 86512903 -69117217 - B1F SINE Alu -31 118 13 4 1245 410 253 0 0 chr4 86513671 86513750 -69116370 - PB1D9 SINE Alu -39 81 3 4 1245 267 291 0 95 chr4 86513750 86513766 -69116354 - MT2B LTR ERVL -365 236 151 4 1245 377 303 33 0 chr4 86513808 86513930 -69116190 - B1F1 SINE Alu 0 149 24 4 1245 774 260 74 42 chr4 86514170 86514387 -69115733 - ID_B1 SINE B4 0 224 1 4 1245 198 71 0 0 chr4 86514578 86514606 -69115514 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4 1245 200 156 43 43 chr4 86514607 86514654 -69115466 + CT-rich Low_complexity Low_complexity 2 48 0 4 1245 278 208 63 25 chr4 86514664 86514743 -69115377 - ID4_ SINE ID 0 83 2 4 1245 225 200 80 0 chr4 86514796 86514846 -69115274 + B1F2 SINE Alu 8 61 -88 4 1245 630 316 80 27 chr4 86514888 86515112 -69115008 - MTEa LTR MaLR 0 379 144 5 1245 3769 94 79 4 chr4 86515587 86516130 -69113990 + MT2B2 LTR ERVL 1 584 0 5 1245 1334 104 126 3 chr4 86516130 86516414 -69113706 + ORR1A2 LTR MaLR 1 319 -8 5 1245 477 0 0 0 chr4 86516474 86516527 -69113593 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1245 297 0 0 0 chr4 86516529 86516562 -69113558 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1245 262 239 111 14 chr4 86516979 86517041 -69113079 + ID4_ SINE ID 4 73 -10 5 1245 806 10 20 0 chr4 86517041 86517139 -69112981 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 5 1245 1234 169 23 0 chr4 86517322 86517541 -69112579 - URR1A DNA MER1_type 0 226 3 5 1245 266 227 104 157 chr4 86517541 86517588 -69112532 + ID_B1 SINE B4 51 91 -133 5 1245 327 189 176 0 chr4 86517588 86517662 -69112458 + PB1D9 SINE Alu 2 88 -32 5 1245 264 333 11 95 chr4 86517713 86517892 -69112228 + MER34A LTR ERV1 408 571 0 6 1245 1238 167 14 23 chr4 86517950 86518165 -69111955 + B3 SINE B2 4 216 0 6 1245 660 290 28 81 chr4 86518187 86518472 -69111648 + B4A SINE B4 1 270 -22 6 1245 366 219 101 42 chr4 86518541 86518660 -69111460 - Charlie1a DNA MER1_type -25 1430 1305 6 1245 861 54 0 0 chr4 86518725 86518836 -69111284 + (GGGAGA)n Simple_repeat Simple_repeat 5 115 0 6 1245 295 156 0 0 chr4 86518876 86518921 -69111199 + ID_B1 SINE B4 177 221 -3 5 1245 247 254 0 35 chr4 86519070 86519127 -69110993 - B4 SINE B4 -173 119 65 6 1245 243 0 0 0 chr4 86520866 86520893 -69109227 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1245 311 279 13 0 chr4 86522079 86522158 -69107962 - PB1D10 SINE Alu 0 117 38 6 1245 922 136 0 14 chr4 86522557 86522699 -69107421 - B1_Mur1 SINE Alu -5 144 5 6 1245 256 225 140 118 chr4 86522705 86522841 -69107279 - B1F1 SINE Alu -10 139 1 6 1245 1190 55 0 33 chr4 86523328 86523479 -69106641 + B1_Mm SINE Alu 2 147 0 7 1245 1357 69 34 0 chr4 86523489 86523664 -69106456 + B2_Mm2 SINE B2 1 181 -14 7 1245 389 168 22 18 chr4 86523664 86523775 -69106345 + B2_Mm2 SINE B2 2 109 -107 7 1245 23 33 0 0 chr4 86523787 86523817 -69106303 + AT_rich Low_complexity Low_complexity 1 30 0 7 1245 382 239 16 117 chr4 86523817 86523945 -69106175 + MT2B LTR ERVL 149 263 -338 7 1245 727 169 62 0 chr4 86523846 86523976 -69106144 + B1_Mm SINE Alu 9 146 -1 7 1245 278 209 75 0 chr4 86524057 86524074 -69106046 + ID4 SINE ID 2 73 -10 7 1245 279 180 20 0 chr4 86524074 86524124 -69105996 + ID SINE ID 24 74 -150 7 1245 1281 246 75 3 chr4 86524264 86524582 -69105538 - RLTR18B LTR ERVK 0 512 172 7 1245 337 175 0 45 chr4 86524578 86524644 -69105476 - RLTR18B LTR ERVK -553 63 1 7 1245 326 330 19 10 chr4 86524644 86524729 -69105391 - ID_B1 SINE B4 -58 166 81 7 1245 680 225 49 0 chr4 86524885 86525027 -69105093 + B1_Mur2 SINE Alu 1 149 0 8 1245 210 105 0 0 chr4 86525075 86525113 -69105007 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 8 1245 189 0 0 0 chr4 86525111 86525132 -69104988 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1245 638 255 28 0 chr4 86525175 86525320 -69104800 - B1F SINE Alu 0 149 1 8 1245 23 0 0 0 chr4 86525796 86525819 -69104301 + AT_rich Low_complexity Low_complexity 1 23 0 8 1245 907 186 48 48 chr4 86525851 86526060 -69104060 - B3 SINE B2 -5 211 3 8 1245 222 37 0 0 chr4 86526060 86526087 -69104033 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1245 180 0 0 0 chr4 86526087 86526107 -69104013 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1245 443 295 36 0 chr4 86526108 86526220 -69103900 - RSINE1 SINE B4 -22 143 28 8 1245 296 291 25 25 chr4 86526222 86526303 -69103817 + MER81 DNA AcHobo 25 105 -9 8 1245 225 337 19 29 chr4 86526985 86527089 -69103031 + B4 SINE B4 77 179 -113 9 1245 430 209 26 79 chr4 86527006 86527120 -69103000 + PB1D9 SINE Alu 12 119 -1 9 1245 629 276 8 0 chr4 86527327 86527461 -69102659 + ID_B1 SINE B4 84 218 -6 9 1245 611 298 59 43 chr4 86527911 86528097 -69102023 - B4A SINE B4 -103 189 1 9 1245 1741 183 69 59 chr4 86528283 86528690 -69101430 + MTD LTR MaLR 1 411 -8 9 1245 422 210 0 12 chr4 86528720 86528802 -69101318 - ID2 SINE ID -1 82 2 9 1245 723 294 12 0 chr4 86528848 86529011 -69101109 - RSINE1 SINE B4 0 165 1 9 1245 491 222 18 27 chr4 86529023 86529170 -69100950 - B1F SINE Alu -8 141 1 9 1245 366 314 69 74 chr4 86529171 86529222 -69100898 - B3 SINE B2 -4 212 169 9 1245 865 243 0 57 chr4 86529222 86529449 -69100671 - B3 SINE B2 0 216 3 9 1245 450 265 98 12 chr4 86529449 86529600 -69100520 - B3A SINE B2 -48 168 11 9 1245 371 223 100 64 chr4 86529753 86529863 -69100257 + L1M3 LINE L1 5443 5556 -627 1 1245 254 278 119 46 chr4 86529940 86530091 -69100029 - MLT1A0 LTR MaLR -21 344 183 1 1245 354 238 0 36 chr4 86530142 86530225 -69099895 - ID4_ SINE ID -2 81 2 1 1245 257 296 37 12 chr4 86530262 86530344 -69099776 + MER33 DNA MER1_type 35 118 -206 1 1245 1309 62 0 0 chr4 86530350 86530510 -69099610 + B2_Mm2 SINE B2 3 162 -33 1 1245 207 69 0 0 chr4 86530510 86530539 -69099581 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1245 54 50 0 10 chr4 86530588 86530633 -69099487 + AT_rich Low_complexity Low_complexity 1 45 0 1 1245 1326 81 27 5 chr4 86530633 86530820 -69099300 + B2_Mm1a SINE B2 2 192 -1 1 1245 54 50 0 10 chr4 86530820 86530874 -69099246 + AT_rich Low_complexity Low_complexity 1 54 0 1 1245 1116 176 54 0 chr4 86530915 86531119 -69099001 - B3 SINE B2 0 216 2 1 1245 234 150 0 0 chr4 86531122 86531162 -69098958 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1245 25 0 0 0 chr4 86531289 86531314 -69098806 + AT_rich Low_complexity Low_complexity 1 25 0 1 1245 221 327 131 0 chr4 86531434 86531541 -69098579 - ID_B1 SINE B4 -20 204 84 1 1245 515 118 12 0 chr4 86532729 86532814 -69097306 + (TC)n Simple_repeat Simple_repeat 2 87 0 1 1245 23 0 0 0 chr4 86532886 86532909 -69097211 + AT_rich Low_complexity Low_complexity 1 23 0 1 1245 470 274 43 10 chr4 86533384 86533523 -69096597 + B3A SINE B2 73 216 0 1 1245 31 0 0 24 chr4 86533666 86533682 -69096438 + AT_rich Low_complexity Low_complexity 1 16 0 1 1245 1363 73 17 0 chr4 86533682 86533861 -69096259 - B2_Mm1t SINE B2 -11 182 1 1 1245 31 0 0 24 chr4 86533861 86533886 -69096234 + AT_rich Low_complexity Low_complexity 1 25 0 1 1245 943 217 17 0 chr4 86533892 86534072 -69096048 - B3 SINE B2 0 216 34 1 1245 652 288 5 59 chr4 86534097 86534300 -69095820 - B3A SINE B2 0 198 7 1 1245 409 257 62 35 chr4 86534326 86534471 -69095649 - B1F2 SINE Alu 0 149 1 1 1245 479 202 162 0 chr4 86534572 86534671 -69095449 - B1_Mur1 SINE Alu -33 116 2 1 1245 260 333 64 18 chr4 86534584 86534694 -69095426 - MT2B LTR ERVL -344 257 143 1 1245 1288 82 43 16 chr4 86534896 86535083 -69095037 + B2_Mm2 SINE B2 2 193 -2 1 1245 211 254 186 0 chr4 86535229 86535288 -69094832 - ID4 SINE ID -13 70 1 1 1245 405 158 0 0 chr4 86537922 86538004 -69092116 + T-rich Low_complexity Low_complexity 1 82 0 1 1245 443 121 0 3 chr4 86538008 86538076 -69092044 - B1_Mus1 SINE Alu -83 66 1 1 1245 1497 68 16 0 chr4 86538078 86538268 -69091852 - B2_Mm2 SINE B2 -1 194 2 1 1245 273 309 12 36 chr4 86538424 86538508 -69091612 + ID SINE ID 2 83 -141 1 1245 317 311 14 0 chr4 86538435 86538509 -69091611 + ID4 SINE ID 9 83 0 1 1245 4487 16 0 0 chr4 86538548 86539041 -69091079 - MT2_Mm LTR ERVL 0 493 1 1 1245 319 0 0 0 chr4 86539041 86539079 -69091041 - MERVL-int LTR ERVL 0 5485 5448 1 1245 386 179 46 35 chr4 86539079 86539166 -69090954 - ORR1A3-int LTR MaLR -1323 640 553 1 1245 15433 25 1 0 chr4 86539166 86540892 -69089228 - MERVL-int LTR ERVL -125 5360 3634 1 1245 6613 11 44 1 chr4 86540882 86541630 -69088490 - MERVL-int LTR ERVL -4705 780 1 1 1245 4487 16 0 0 chr4 86541630 86542123 -69087997 - MT2_Mm LTR ERVL 0 493 1 1 1245 976 217 189 23 chr4 86542224 86542531 -69087589 - MTD LTR MaLR -60 359 2 1 1245 23 33 0 0 chr4 86542648 86542678 -69087442 + AT_rich Low_complexity Low_complexity 1 30 0 1 1245 440 185 32 21 chr4 86543699 86543793 -69086327 - PB1D7 SINE Alu 0 120 26 1 1245 1294 46 6 11 chr4 86544105 86544280 -69085840 + (TCTCC)n Simple_repeat Simple_repeat 4 177 0 1 1245 751 310 23 0 chr4 86544297 86544513 -69085607 - ID_B1 SINE B4 -1 223 3 1 1245 441 0 0 0 chr4 86544547 86544596 -69085524 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1245 243 340 10 31 chr4 86545175 86545272 -69084848 - MIR3 SINE MIR -28 180 86 1 1245 340 281 190 0 chr4 86545555 86545676 -69084444 + MER58A DNA MER1_type 62 205 -19 1 1245 399 270 17 0 chr4 86545680 86545795 -69084325 - PB1D10 SINE Alu 0 117 1 1 1245 1018 184 153 0 chr4 86546011 86546207 -69083913 + URR1A DNA MER1_type 1 226 0 1 1245 348 83 0 0 chr4 86546612 86546660 -69083460 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1245 25 0 0 0 chr4 86546665 86546690 -69083430 + AT_rich Low_complexity Low_complexity 1 25 0 1 1245 446 235 119 81 chr4 86546697 86546882 -69083238 - B3A SINE B2 -5 193 2 1 1245 495 254 159 21 chr4 86546900 86547045 -69083075 + B3 SINE B2 1 165 -51 1 1245 328 255 41 130 chr4 86547075 86547199 -69082921 - PB1D7 SINE Alu -21 128 16 1 1245 43 0 0 0 chr4 86547212 86547255 -69082865 + AT_rich Low_complexity Low_complexity 1 43 0 1 1245 894 202 136 5 chr4 86547258 86547442 -69082678 - B3 SINE B2 -8 208 1 1 1245 445 138 322 52 chr4 86547455 86547570 -69082550 - B1_Mur3 SINE Alu -1 148 3 1 1245 555 16 0 0 chr4 86547906 86547970 -69082150 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1245 1223 125 10 25 chr4 86548652 86548849 -69081271 + B2_Mm2 SINE B2 1 194 -1 1 1245 756 246 53 24 chr4 86548863 86549071 -69081049 + B3 SINE B2 1 214 -2 1 1245 909 182 46 15 chr4 86549150 86549345 -69080775 - Lx5 LINE L1 0 7050 6850 1 1245 1337 79 22 6 chr4 86549373 86549551 -69080569 + B2_Mm2 SINE B2 1 181 -14 1 1245 459 67 164 41 chr4 86549579 86549691 -69080429 + B2_Mm2 SINE B2 47 186 -7 1 1245 755 209 0 45 chr4 86549729 86549884 -69080236 + B1_Mur2 SINE Alu 2 149 0 1 1245 749 170 13 64 chr4 86550382 86550539 -69079581 - B1_Mur2 SINE Alu 0 149 1 1 1245 225 238 0 60 chr4 86550542 86550609 -69079511 + CT-rich Low_complexity Low_complexity 3 65 0 1 1245 306 330 133 6 chr4 86550849 86551029 -69079091 - L2a LINE L2 0 3426 3224 1 1245 766 179 52 0 chr4 86551188 86551322 -69078798 - B1_Mur1 SINE Alu 0 149 9 1 1245 301 132 0 36 chr4 86551329 86551384 -69078736 - HAL1-3A_ME LINE L1 -828 2030 1978 1 1245 513 76 0 0 chr4 86551387 86551466 -69078654 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 1 1245 624 222 6 75 chr4 86551483 86551643 -69078477 - B3 SINE B2 -13 203 50 1 1245 1574 194 109 35 chr4 86551859 86552227 -69077893 + MTD LTR MaLR 11 405 -14 1 1245 2370 148 99 25 chr4 86552661 86553132 -69076988 - RLTR11A LTR ERVK 0 528 1 1 1245 190 281 88 0 chr4 86553183 86553240 -69076880 - L2a LINE L2 -6 3420 3359 1 1245 256 254 74 11 chr4 86553296 86553381 -69076739 + B4A SINE B4 68 150 -142 1 1245 320 218 0 0 chr4 86553329 86553384 -69076736 + B1_Mur4 SINE Alu 15 69 -81 1 1245 1762 244 102 33 chr4 86553387 86553907 -69076213 - RLTR12A LTR ERVK -12 556 1 1 1245 625 138 0 11 chr4 86553907 86554000 -69076120 + B1_Mur3 SINE Alu 58 149 0 1 1245 250 133 43 22 chr4 86554106 86554152 -69075968 - ORR1D2 LTR MaLR -7 363 317 1 1245 1171 238 50 42 chr4 86554154 86554731 -69075389 - Lx7 LINE L1 -2 7694 7205 1 1245 1311 89 10 45 chr4 86554737 86554937 -69075183 - B2_Mm1t SINE B2 0 193 1 1 1245 2531 191 67 34 chr4 86555082 86555677 -69074443 - Lx7 LINE L1 -491 7205 6591 1 1245 259 204 0 0 chr4 86555983 86556027 -69074093 - Lx7 LINE L1 -1098 6598 6555 1 1245 841 178 13 7 chr4 86556030 86556183 -69073937 - RLTR25A LTR ERVK 0 1103 950 1 1245 1043 184 1 17 chr4 86556189 86556379 -69073741 - RLTR11A LTR ERVK 0 528 342 1 1245 935 55 23 0 chr4 86556379 86556507 -69073613 + (TTTTC)n Simple_repeat Simple_repeat 4 134 0 1 1245 476 32 0 16 chr4 86556509 86556572 -69073548 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 1245 836 250 36 32 chr4 86556572 86556597 -69073523 - RLTR11A LTR ERVK -186 341 311 1 1245 1198 68 0 0 chr4 86556604 86556750 -69073370 - B1_Mm SINE Alu 0 147 2 1 1245 397 151 182 36 chr4 86556750 86556860 -69073260 - ORR1D2 LTR MaLR -244 126 1 1 1245 308 377 58 29 chr4 86556868 86557073 -69073047 - L2a LINE L2 -287 3139 2929 1 1245 189 180 0 0 chr4 86558363 86558413 -69071707 + C-rich Low_complexity Low_complexity 1 50 0 1 1245 751 199 71 0 chr4 86558444 86558585 -69071535 - B3A SINE B2 -47 151 1 1 1245 396 336 8 0 chr4 86558780 86558902 -69071218 + B1_Mur1 SINE Alu 2 124 -25 1 1245 1022 52 7 7 chr4 86558916 86559051 -69071069 + B2_Mm1t SINE B2 58 192 -1 1 1245 428 82 284 0 chr4 86559049 86559178 -69070942 + B2_Mm2 SINE B2 27 191 -4 1 1245 232 240 60 0 chr4 86559399 86559449 -69070671 - RMER30 DNA MER1_type -142 60 8 1 1245 830 288 30 20 chr4 86559479 86559681 -69070439 - ID_B1 SINE B4 -9 215 12 1 1245 374 121 15 0 chr4 86559775 86559841 -69070279 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1245 449 322 13 20 chr4 86559965 86560117 -69070003 - B4A SINE B4 -8 284 134 1 1245 468 286 98 0 chr4 86560354 86560487 -69069633 + ID_B1 SINE B4 2 147 -77 1 1245 294 250 91 13 chr4 86560448 86560525 -69069595 + PB1D7 SINE Alu 27 109 -11 1 1245 573 285 14 14 chr4 86560564 86560710 -69069410 - B1_Mur1 SINE Alu -3 146 1 1 1245 263 242 165 0 chr4 86560722 86560813 -69069307 - PB1D10 SINE Alu -11 106 1 1 1245 842 135 24 0 chr4 86561207 86561333 -69068787 - B1_Mur1 SINE Alu -3 146 18 1 1245 270 136 0 0 chr4 86561545 86561589 -69068531 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1245 1099 96 0 14 chr4 86561591 86561739 -69068381 - B1_Mus2 SINE Alu 0 147 2 1 1245 219 69 0 0 chr4 86561764 86561793 -69068327 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1245 1255 41 0 0 chr4 86561793 86561938 -69068182 - B1_Mm SINE Alu -2 145 1 1 1245 23 54 0 0 chr4 86561995 86562032 -69068088 + AT_rich Low_complexity Low_complexity 1 37 0 1 1245 690 258 10 64 chr4 86562040 86562243 -69067877 + B3A SINE B2 1 192 -6 2 1245 33 43 0 0 chr4 86562245 86562292 -69067828 + AT_rich Low_complexity Low_complexity 1 47 0 2 1245 626 266 12 42 chr4 86562296 86562461 -69067659 - RSINE1 SINE B4 -2 163 4 2 1245 222 229 16 0 chr4 86562547 86562608 -69067512 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 2 1245 610 172 127 32 chr4 86562611 86562737 -69067383 - B1_Mus2 SINE Alu -1 146 9 2 1245 688 209 149 32 chr4 86565324 86565512 -69064608 + B3 SINE B2 1 210 -6 2 1245 25 0 0 0 chr4 86566806 86566831 -69063289 + AT_rich Low_complexity Low_complexity 1 25 0 2 1245 554 51 13 0 chr4 86566838 86566916 -69063204 + (TATG)n Simple_repeat Simple_repeat 4 82 0 2 1245 465 228 0 52 chr4 86566951 86567048 -69063072 - RSINE1 SINE B4 -71 94 3 2 1245 530 255 13 78 chr4 86567053 86567186 -69062934 - ID_B1 SINE B4 -2 222 99 2 1245 765 216 332 7 chr4 86567186 86567466 -69062654 + ORR1D1 LTR MaLR 4 374 0 2 1245 530 255 13 78 chr4 86567466 86567485 -69062635 - ID_B1 SINE B4 -126 98 81 2 1245 202 167 0 45 chr4 86567519 86567563 -69062557 + CT-rich Low_complexity Low_complexity 1 42 0 2 1245 263 222 6 0 chr4 86567564 86567621 -69062499 - B1F SINE Alu -6 143 56 2 1245 648 179 11 132 chr4 86567935 86568109 -69062011 - Lx5 LINE L1 -80 6970 6818 2 1245 294 31 45 45 chr4 86568186 86568253 -69061867 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1245 347 0 23 0 chr4 86568623 86568666 -69061454 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1245 246 219 0 0 chr4 86569156 86569220 -69060900 + GA-rich Low_complexity Low_complexity 3 66 0 2 1245 627 286 68 0 chr4 86569266 86569413 -69060707 + RSINE1 SINE B4 2 158 -7 2 1245 259 292 30 50 chr4 86569477 86569578 -69060542 + L1MA6 LINE L1 5649 5747 -544 2 1245 605 191 109 0 chr4 86569939 86570086 -69060034 - L1MA4 LINE L1 -360 5940 5778 2 1245 391 318 59 18 chr4 86570193 86570465 -69059655 + L1MA6 LINE L1 6013 6295 -5 2 1245 204 206 0 0 chr4 86570711 86570758 -69059362 + C-rich Low_complexity Low_complexity 1 47 0 2 1245 268 272 136 0 chr4 86570788 86570869 -69059251 - PB1 SINE Alu -11 116 25 2 1245 312 91 0 0 chr4 86571030 86571074 -69059046 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 2 1245 373 275 8 92 chr4 86571534 86571654 -69058466 - ID_B1 SINE B4 -23 201 92 2 1245 600 191 156 22 chr4 86571686 86571845 -69058275 - B3 SINE B2 -6 210 50 2 1245 668 149 97 0 chr4 86572105 86572219 -69057901 + B1_Mus2 SINE Alu 7 131 -16 2 1245 1702 31 0 0 chr4 86572426 86572618 -69057502 - B2_Mm1t SINE B2 0 193 2 2 1245 4446 168 116 74 chr4 86573308 86573396 -69056724 - RLTR14-int LTR ERV1 -4104 1213 1098 2 1245 330 132 0 0 chr4 86573396 86573449 -69056671 + (CAT)n Simple_repeat Simple_repeat 3 55 0 2 1245 4446 168 116 74 chr4 86573449 86574169 -69055951 - RLTR14-int LTR ERV1 -4220 1097 419 2 1245 777 49 0 0 chr4 86574169 86574271 -69055849 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1245 4446 168 116 74 chr4 86574271 86574505 -69055615 - RLTR14-int LTR ERV1 -4899 418 128 2 1245 2181 165 5 13 chr4 86574582 86574963 -69055157 - RLTR14 LTR ERV1 0 382 5 2 1245 235 108 27 0 chr4 86574970 86575007 -69055113 - RMER5 LTR ERV1 -66 468 431 2 1245 277 269 25 13 chr4 86576361 86576440 -69053680 - B1F SINE Alu -3 146 67 2 1245 180 0 0 0 chr4 86576440 86576460 -69053660 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1245 276 30 0 0 chr4 86576464 86576497 -69053623 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 1245 946 222 78 81 chr4 86576676 86577100 -69053020 + L1VL1 LINE L1 10 392 -6030 2 1245 498 245 44 25 chr4 86577095 86577270 -69052850 + L1Md_F LINE L1 670 812 -5804 2 1245 560 174 87 0 chr4 86577270 86577385 -69052735 + L1Md_F LINE L1 725 849 -5767 2 1245 3179 131 104 7 chr4 86577394 86577931 -69052189 - RLTR1D LTR ERV1 -16 589 1 2 1245 2782 104 0 0 chr4 86577931 86578335 -69051785 + L1Md_F LINE L1 833 1236 -5380 2 1245 436 84 0 14 chr4 86578334 86578406 -69051714 + L1Md_F LINE L1 1347 1417 -4466 2 1245 218 307 11 33 chr4 86578410 86578501 -69051619 + C-rich Low_complexity Low_complexity 4 92 0 2 1245 1136 73 7 0 chr4 86578554 86578705 -69051415 - B2_Mm2 SINE B2 -42 153 2 2 1245 529 312 80 89 chr4 86579886 86580347 -69049773 + MLT2C2 LTR ERVL 3 459 -5 2 1245 2289 234 100 82 chr4 86580472 86581058 -69049062 - RLTR40 LTR ERVK -10 807 175 2 1245 944 138 13 27 chr4 86581058 86581207 -69048913 - B1_Mur3 SINE Alu 0 149 3 2 1245 2289 234 100 82 chr4 86581207 86581275 -69048845 - RLTR40 LTR ERVK -643 174 116 2 1245 852 142 6 57 chr4 86581275 86581432 -69048688 - B1_Mur3 SINE Alu 0 149 1 2 1245 2289 234 100 82 chr4 86581432 86581453 -69048667 - RLTR40 LTR ERVK -702 115 115 2 1245 1233 54 0 0 chr4 86581453 86581600 -69048520 - B1_Mus1 SINE Alu 0 148 2 2 1245 2289 234 100 82 chr4 86581600 86581715 -69048405 - RLTR40 LTR ERVK -702 115 1 2 1245 1119 218 5 5 chr4 86582498 86582710 -69047410 + B3 SINE B2 5 216 0 2 1245 339 25 0 0 chr4 86582741 86582781 -69047339 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1245 212 154 0 0 chr4 86582902 86582941 -69047179 + C-rich Low_complexity Low_complexity 1 39 0 2 1245 3524 23 2 0 chr4 86583555 86583950 -69046170 - MTA_Mm LTR MaLR 0 396 1 2 1245 353 248 35 35 chr4 86584178 86584291 -69045829 + RLTR11B LTR ERVK 1 113 -340 2 1245 257 271 73 87 chr4 86584294 86584512 -69045608 + RLTR15 LTR ERVK 70 284 -75 2 1245 292 43 0 42 chr4 86584518 86584566 -69045554 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 2 1245 1165 73 0 0 chr4 86584566 86584717 -69045403 - B2_Mm2 SINE B2 -43 152 2 2 1245 25 0 0 0 chr4 86584804 86584829 -69045291 + AT_rich Low_complexity Low_complexity 1 25 0 2 1245 305 350 100 39 chr4 86585079 86585132 -69044988 - L1M5 LINE L1 -603 5559 5505 2 1245 3361 41 5 0 chr4 86585132 86585526 -69044594 + MTA_Mm LTR MaLR 1 396 0 2 1245 333 342 48 25 chr4 86585526 86585701 -69044419 - L1M5 LINE L1 -658 5504 5317 2 1245 21 0 0 0 chr4 86585768 86585789 -69044331 + AT_rich Low_complexity Low_complexity 1 21 0 2 1245 748 117 0 0 chr4 86585802 86585905 -69044215 - RMER1A Other Other -189 841 739 2 1245 1218 232 59 11 chr4 86585925 86586212 -69043908 - RMER1B Other Other -759 307 7 2 1245 3799 204 68 55 chr4 86586568 86586636 -69043484 - RMER1B Other Other -43 1023 955 2 1245 234 0 0 0 chr4 86586636 86586662 -69043458 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1245 3799 204 68 55 chr4 86586662 86587532 -69042588 - RMER1B Other Other -112 954 74 2 1245 1428 260 19 11 chr4 86587644 86588010 -69042110 + ORR1D2 LTR MaLR 2 370 0 2 1245 214 336 27 62 chr4 86588645 86588791 -69041329 + MER5A DNA MER1_type 2 142 -47 2 1245 3014 110 37 12 chr4 86588948 86589453 -69040667 - RLTR31A_Mm LTR ERVK 0 561 6 2 1245 1082 227 27 63 chr4 86590237 86590544 -69039576 - ORR1C2 LTR MaLR 0 384 112 2 1245 207 0 0 0 chr4 86591113 86591136 -69038984 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1245 582 114 0 0 chr4 86591571 86591659 -69038461 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 2 1245 255 236 40 27 chr4 86591659 86591733 -69038387 - B2_Mm2 SINE B2 0 195 121 2 1245 627 167 160 42 chr4 86591707 86591851 -69038269 - RLTR31A_Mm LTR ERVK -121 463 303 2 1245 1273 102 11 0 chr4 86591940 86592117 -69038003 - B2_Mm1t SINE B2 -14 179 1 2 1245 205 316 0 17 chr4 86592164 86592222 -69037898 + MIRc SINE MIR 52 108 -160 2 1245 360 283 70 76 chr4 86592372 86592544 -69037576 + MER5B DNA MER1_type 1 171 -7 2 1245 899 287 55 28 chr4 86592824 86593114 -69037006 + MTD LTR MaLR 1 298 -121 2 1245 363 296 104 0 chr4 86593149 86593284 -69036836 + MTD LTR MaLR 269 417 -2 2 1245 704 275 67 38 chr4 86593296 86593534 -69036586 + B4 SINE B4 48 292 0 2 1245 436 264 81 76 chr4 86593981 86594178 -69035942 - MLT1H LTR MaLR -7 542 345 2 1245 999 148 68 0 chr4 86594235 86594411 -69035709 + RLTR25B LTR ERVK 346 533 -495 2 1245 430 209 81 0 chr4 86594429 86594515 -69035605 + RLTR25B LTR ERVK 621 713 -315 2 1245 717 85 28 19 chr4 86594562 86594670 -69035450 - B2_Mm2 SINE B2 -85 110 2 2 1245 1918 226 30 20 chr4 86594772 86595173 -69034947 + MTD LTR MaLR 1 405 -14 2 1245 1715 150 158 6 chr4 86595192 86595527 -69034593 + ORR1B1 LTR MaLR 1 386 -8 2 1245 6322 66 1 18 chr4 86595534 86596362 -69033758 + L1Md_F2 LINE L1 5756 6569 -13 2 1245 22 0 0 0 chr4 86596362 86596384 -69033736 + AT_rich Low_complexity Low_complexity 1 22 0 2 1245 2816 70 75 0 chr4 86596434 86596806 -69033314 + MTB LTR MaLR 1 400 0 2 1245 269 319 68 20 chr4 86596869 86597016 -69033104 + ORR1E LTR MaLR 98 251 -108 2 1245 1285 120 16 5 chr4 86597276 86597469 -69032651 + B2_Mm2 SINE B2 1 195 0 2 1245 639 0 0 0 chr4 86597747 86597818 -69032302 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 2 1245 2969 150 30 12 chr4 86597906 86598412 -69031708 - RLTR11A2 LTR ERVK -12 515 1 2 1245 387 304 189 37 chr4 86598481 86598672 -69031448 + ID_B1 SINE B4 5 224 0 2 1245 21 0 0 0 chr4 86598684 86598705 -69031415 + AT_rich Low_complexity Low_complexity 1 21 0 2 1245 214 179 0 0 chr4 86599050 86599089 -69031031 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1245 570 200 10 34 chr4 86599337 86599497 -69030623 - L1MA4A LINE L1 -403 5897 5737 2 1245 311 333 75 6 chr4 86599702 86599862 -69030258 - MER117 DNA MER1_type -26 171 1 2 1245 349 191 53 63 chr4 86599906 86600001 -69030119 + PB1D7 SINE Alu 27 120 0 2 1245 281 351 0 21 chr4 86600160 86600256 -69029864 - ORR1E LTR MaLR 0 359 266 2 1245 465 100 0 0 chr4 86600385 86600432 -69029688 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1245 1272 41 12 6 chr4 86600432 86600604 -69029516 + (GAA)n Simple_repeat Simple_repeat 3 175 0 2 1245 465 100 0 0 chr4 86600604 86600626 -69029494 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1245 253 350 23 47 chr4 86600626 86600755 -69029365 - ORR1E LTR MaLR -170 189 64 2 1245 230 340 35 70 chr4 86600780 86600894 -69029226 - ORR1E LTR MaLR -264 110 1 2 1245 604 254 70 17 chr4 86600897 86601069 -69029051 - B3A SINE B2 -16 182 2 2 1245 207 0 0 0 chr4 86602016 86602039 -69028081 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1245 343 255 165 57 chr4 86602103 86602261 -69027859 - MER3 DNA MER1_type -18 191 17 2 1245 183 184 0 0 chr4 86602344 86602382 -69027738 + T-rich Low_complexity Low_complexity 1 38 0 2 1245 226 105 0 0 chr4 86602383 86602421 -69027699 - B1_Mur4 SINE Alu -1 149 112 3 1245 955 267 169 55 chr4 86602699 86603171 -69026949 - RMER5 LTR ERV1 0 534 9 3 1245 478 244 116 22 chr4 86603493 86603631 -69026489 - RSINE1 SINE B4 -3 162 12 3 1245 1517 24 2 23 chr4 86604711 86605191 -69024929 + (TTC)n Simple_repeat Simple_repeat 1 470 0 3 1245 1245 48 0 0 chr4 86605194 86605340 -69024780 - B1_Mm SINE Alu 0 147 2 3 1245 236 53 26 0 chr4 86605351 86605389 -69024731 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1245 7376 12 0 0 chr4 86605534 86606347 -69023773 - L1Md_A LINE L1 0 6582 5770 3 1245 697 243 52 46 chr4 86606979 86607173 -69022947 + B3A SINE B2 4 198 0 3 1245 182 254 194 0 chr4 86607622 86607689 -69022431 - MIRm SINE MIR -133 143 64 3 1245 277 263 84 75 chr4 86608089 86608196 -69021924 - PB1D10 SINE Alu 0 117 10 3 1245 418 183 73 0 chr4 86608117 86608199 -69021921 - 4.5SRNA scRNA scRNA -1 93 6 3 1245 3616 157 5 28 chr4 86608597 86609206 -69020914 + RLTR17 LTR ERVK 98 692 0 3 1245 219 119 48 0 chr4 86609210 86609252 -69020868 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 3 1245 683 207 0 0 chr4 86609552 86609692 -69020428 - Lx LINE L1 -6 6648 6509 3 1245 3271 152 13 69 chr4 86610032 86610641 -69019479 + RMER15 LTR ERVL 1 575 0 3 1245 2689 224 99 95 chr4 86611368 86612212 -69017908 - RMER13A LTR ERVK -12 848 1 3 1245 1166 191 128 36 chr4 86612259 86612563 -69017557 - IAPEY3_LTR LTR ERVK 0 332 1 3 1245 347 326 63 56 chr4 86612679 86612965 -69017155 - B4 SINE B4 -2 290 3 3 1245 21 36 0 0 chr4 86613638 86613666 -69016454 + AT_rich Low_complexity Low_complexity 1 28 0 3 1245 233 351 7 79 chr4 86613681 86613702 -69016418 - RSINE1 SINE B4 0 165 148 3 1245 316 40 0 39 chr4 86613702 86613754 -69016366 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1245 233 351 7 79 chr4 86613754 86613871 -69016249 - RSINE1 SINE B4 -18 147 37 3 1245 893 32 0 16 chr4 86614054 86614182 -69015938 - L1Md_F3 LINE L1 0 6584 6459 3 1245 1686 117 7 4 chr4 86614519 86614793 -69015327 + RMER6C LTR ERVK 416 690 0 3 1245 27 29 0 0 chr4 86615038 86615072 -69015048 + AT_rich Low_complexity Low_complexity 1 34 0 3 1245 225 65 0 0 chr4 86615150 86615181 -69014939 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1245 3586 121 118 12 chr4 86615182 86615861 -69014259 - RLTR40 LTR ERVK -64 753 3 3 1245 315 0 0 0 chr4 86615865 86615900 -69014220 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1245 1054 298 76 50 chr4 86615924 86616326 -69013794 + Lx7 LINE L1 711 1133 -6595 3 1245 1401 83 10 5 chr4 86616326 86616520 -69013600 + B2_Mm2 SINE B2 1 195 0 3 1245 2541 205 150 20 chr4 86616520 86617310 -69012810 + Lx7 LINE L1 1134 2032 -3848 3 1245 2379 229 110 89 chr4 86617400 86618689 -69011431 + RMER1B Other Other 45 1064 -2 3 1245 2451 182 32 4 chr4 86618683 86619178 -69010942 + Lx7 LINE L1 2020 2528 -3352 3 1245 316 231 15 0 chr4 86619178 86619243 -69010877 - L1_Mur3 LINE L1 -2534 3346 3281 3 1245 1163 82 0 0 chr4 86619261 86619407 -69010713 - B1_Mm SINE Alu 0 147 2 3 1245 928 171 55 6 chr4 86619440 86619487 -69010633 - ORR1B2 LTR MaLR -8 359 313 3 1245 216 0 0 0 chr4 86619487 86619511 -69010609 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1245 928 177 55 7 chr4 86619511 86619667 -69010453 - ORR1B2 LTR MaLR -55 312 110 3 1245 1379 195 45 3 chr4 86619667 86619981 -69010139 + Lx7 LINE L1 5164 5490 -390 3 1245 2712 249 40 39 chr4 86619975 86620695 -69009425 + Lx7 LINE L1 5976 6696 -1000 3 1245 1681 237 28 62 chr4 86620709 86621373 -69008747 + RLTR18B LTR ERVK 5 511 -1 3 1245 2721 252 33 23 chr4 86621384 86622083 -69008037 + Lx7 LINE L1 6691 7396 -300 3 1245 267 229 60 12 chr4 86622111 86622195 -69007925 + Lx8 LINE L1 7358 7445 -28 3 1245 524 272 188 43 chr4 86623204 86623619 -69006501 + Lx8 LINE L1 6970 7444 -29 3 1245 349 203 0 0 chr4 86624290 86624354 -69005766 - MTEa LTR MaLR -6 373 310 3 1245 313 119 17 0 chr4 86624376 86624435 -69005685 - RMER10A LTR ERVL -7 435 376 3 1245 717 181 109 17 chr4 86624717 86624736 -69005384 - B2_Mm1t SINE B2 -3 190 166 3 1245 306 0 0 0 chr4 86624736 86624770 -69005350 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3 1245 822 131 71 7 chr4 86624770 86624924 -69005196 - B2_Mm2 SINE B2 -31 164 1 3 1245 186 296 0 0 chr4 86625099 86625170 -69004950 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1245 1448 83 16 0 chr4 86625626 86625818 -69004302 - B2_Mm2 SINE B2 0 195 1 3 1245 781 207 0 7 chr4 86626164 86626310 -69003810 - B1F SINE Alu -2 147 3 3 1245 322 247 227 81 chr4 86626480 86626665 -69003455 + MER20 DNA MER1_type 2 213 -6 3 1245 1094 73 0 0 chr4 86627078 86627215 -69002905 + B1_Mus2 SINE Alu 1 137 -10 3 1245 237 194 30 0 chr4 86627223 86627290 -69002830 + A-rich Low_complexity Low_complexity 1 69 0 3 1245 303 244 0 0 chr4 86627317 86627395 -69002725 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1245 1276 41 44 9 chr4 86627467 86627816 -69002304 + (TCTA)n Simple_repeat Simple_repeat 1 361 0 3 1245 474 331 8 0 chr4 86628725 86628849 -69001271 - ID_B1 SINE B4 -7 217 93 3 1245 185 0 40 0 chr4 86628993 86629018 -69001102 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1245 208 0 30 30 chr4 86629795 86629828 -69000292 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1245 430 225 45 9 chr4 86629830 86629942 -69000178 - PB1D10 SINE Alu -1 116 1 3 1245 21 0 0 0 chr4 86631038 86631059 -68999061 + AT_rich Low_complexity Low_complexity 1 21 0 3 1245 288 259 0 0 chr4 86631844 86631902 -68998218 + polypurine Low_complexity Low_complexity 3 60 0 3 1245 207 0 0 0 chr4 86632049 86632072 -68998048 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 3 1245 26 30 0 0 chr4 86636792 86636825 -68993295 + AT_rich Low_complexity Low_complexity 1 33 0 3 1245 23 33 0 0 chr4 86636912 86636942 -68993178 + AT_rich Low_complexity Low_complexity 1 30 0 3 1245 708 203 8 8 chr4 86638053 86638187 -68991933 + B1_Mur2 SINE Alu 5 138 -11 3 1245 987 34 0 0 chr4 86638217 86638336 -68991784 + (CCAA)n Simple_repeat Simple_repeat 1 119 0 3 1246 630 122 0 0 chr4 86638717 86638815 -68991305 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 3 1246 510 332 52 52 chr4 86639082 86639352 -68990768 + ORR1E LTR MaLR 44 313 -46 3 1246 379 305 99 0 chr4 86639701 86639842 -68990278 + ID_B1 SINE B4 8 162 -62 3 1246 618 71 0 0 chr4 86639872 86639956 -68990164 + (CAAAC)n Simple_repeat Simple_repeat 4 87 0 3 1246 386 191 146 0 chr4 86640041 86640130 -68989990 - ID_B1 SINE B4 -2 222 121 3 1246 23 0 0 0 chr4 86640177 86640200 -68989920 + AT_rich Low_complexity Low_complexity 1 23 0 3 1246 24 0 0 0 chr4 86640474 86640498 -68989622 + AT_rich Low_complexity Low_complexity 1 24 0 3 1246 621 40 0 0 chr4 86640877 86640953 -68989167 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 1246 221 297 40 0 chr4 86643162 86643236 -68986884 + MIRb SINE MIR 119 195 -73 3 1246 423 0 0 0 chr4 86643357 86643404 -68986716 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 3 1246 291 231 31 0 chr4 86643406 86643471 -68986649 - ID4 SINE ID -15 68 2 3 1246 432 276 0 37 chr4 86643475 86643584 -68986536 - PB1D10 SINE Alu -6 111 7 3 1246 391 203 14 0 chr4 86643975 86644049 -68986071 + RSINE1 SINE B4 22 96 -69 3 1246 313 125 41 14 chr4 86644156 86644229 -68985891 + RCHARR1 DNA MER1_type 453 527 -447 3 1246 562 252 56 7 chr4 86644231 86644375 -68985745 + RSINE1 SINE B4 2 152 -13 3 1246 1088 267 88 34 chr4 86644434 86644841 -68985279 + RCHARR1 DNA MER1_type 546 974 0 3 1246 282 365 63 0 chr4 86645134 86645260 -68984860 - B1F SINE Alu -15 134 1 3 1246 234 0 0 0 chr4 86645564 86645590 -68984530 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1246 4384 65 5 19 chr4 86645633 86646212 -68983908 - L1Md_F2 LINE L1 0 6582 6012 3 1246 845 153 135 0 chr4 86646254 86646417 -68983703 + B2_Mm2 SINE B2 1 185 -10 3 1246 605 282 118 48 chr4 86646426 86646698 -68983422 + B4A SINE B4 2 292 0 3 1246 586 0 27 0 chr4 86646727 86646801 -68983319 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 3 1246 312 127 0 0 chr4 86646817 86646872 -68983248 + (GGGAGA)n Simple_repeat Simple_repeat 6 60 0 3 1246 375 277 104 37 chr4 86647554 86647689 -68982431 - B1F SINE Alu -5 144 1 3 1246 225 0 0 0 chr4 86647832 86647857 -68982263 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1246 418 317 8 16 chr4 86648327 86648449 -68981671 + RSINE1 SINE B4 1 121 -44 3 1246 251 0 59 0 chr4 86649105 86649139 -68980981 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 3 1246 897 190 0 0 chr4 86649137 86649316 -68980804 + CT-rich Low_complexity Low_complexity 2 180 0 3 1246 1133 82 0 0 chr4 86649319 86649466 -68980654 - B1_Mus1 SINE Alu 0 148 2 3 1246 186 43 0 0 chr4 86650573 86650596 -68979524 + (CAT)n Simple_repeat Simple_repeat 2 24 0 3 1246 257 408 10 0 chr4 86651257 86651360 -68978760 - PB1D10 SINE Alu -12 105 2 3 1246 182 62 31 0 chr4 86651419 86651451 -68978669 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1246 561 274 0 0 chr4 86651452 86651576 -68978544 - RSINE1 SINE B4 -41 124 1 3 1246 2122 121 16 3 chr4 86652702 86653025 -68977095 + ORR1A4 LTR MaLR 3 329 0 3 1246 548 305 87 37 chr4 86653027 86653412 -68976708 + MLT1H LTR MaLR 79 624 0 3 1246 3241 41 8 3 chr4 86653689 86654081 -68976039 - MTA_Mm LTR MaLR -2 394 1 3 1246 2350 176 7 2 chr4 86654295 86654700 -68975420 - MTC LTR MaLR -12 409 3 3 1246 1270 265 36 8 chr4 86654912 86655270 -68974850 + MTEa LTR MaLR 1 368 -11 3 1246 439 262 146 79 chr4 86655381 86655634 -68974486 - MTEa LTR MaLR -108 271 2 3 1246 2596 132 39 44 chr4 86655686 86656110 -68974010 + RLTR28 LTR ERVL 5 419 -105 3 1246 1186 35 14 0 chr4 86656110 86656253 -68973867 - B1_Mm SINE Alu -1 146 2 4 1246 2596 131 36 44 chr4 86656253 86656364 -68973756 + RLTR28 LTR ERVL 420 524 0 3 1246 690 245 40 4 chr4 86656940 86657136 -68972984 - B3A SINE B2 -15 201 1 4 1246 472 169 0 0 chr4 86657181 86657258 -68972862 - B1_Mur4 SINE Alu -21 129 53 4 1246 435 266 8 24 chr4 86657236 86657363 -68972757 + MLT1G3 LTR MaLR 443 567 -28 4 1246 420 266 32 8 chr4 86660636 86660761 -68969359 + B1F SINE Alu 5 132 -17 4 1246 243 0 0 0 chr4 86660763 86660790 -68969330 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1246 675 67 0 0 chr4 86660790 86660878 -68969242 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1246 535 260 79 0 chr4 86662065 86662192 -68967928 - B4A SINE B4 -94 198 62 4 1246 616 238 27 0 chr4 86662181 86662328 -68967792 - B4A SINE B4 -141 151 1 4 1246 237 65 0 0 chr4 86662406 86662437 -68967683 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1246 1370 201 181 18 chr4 86662584 86662902 -68967218 + Lx9 LINE L1 7132 7500 -144 4 1246 450 0 0 0 chr4 86662902 86662952 -68967168 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1246 1370 201 181 18 chr4 86662952 86663069 -68967051 + Lx9 LINE L1 7501 7638 -6 4 1246 272 284 0 0 chr4 86663753 86663827 -68966293 + MIR SINE MIR 189 262 0 4 1246 1860 170 48 85 chr4 86664541 86664661 -68965459 + MTC LTR MaLR 1 104 -317 4 1246 1065 137 95 0 chr4 86664661 86664851 -68965269 + Lx2A1 LINE L1 6786 6993 -15 4 1246 1860 170 48 85 chr4 86664851 86665167 -68964953 + MTC LTR MaLR 105 421 0 4 1246 292 283 46 23 chr4 86665544 86665674 -68964446 + MLT1A LTR MaLR 54 186 -188 4 1246 239 348 0 0 chr4 86665856 86665925 -68964195 + MLT1A LTR MaLR 293 361 -29 4 1246 1085 163 39 43 chr4 86667129 86667360 -68962760 + RMER1C Other Other 1111 1340 -2 4 1246 738 169 0 0 chr4 86668419 86668561 -68961559 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 4 1246 515 257 43 0 chr4 86668724 86668864 -68961256 + B1_Mur2 SINE Alu 2 147 -2 4 1246 261 316 70 63 chr4 86670042 86670184 -68959936 - MIR SINE MIR -80 182 40 4 1246 547 246 92 0 chr4 86670237 86670367 -68959753 - ID_B1 SINE B4 -49 175 34 4 1246 443 293 66 7 chr4 86670706 86670857 -68959263 - MER58C DNA MER1_type -19 196 37 4 1246 275 279 25 0 chr4 86670923 86671002 -68959118 - ID4 SINE ID -2 81 1 4 1246 1229 160 46 43 chr4 86671623 86671904 -68958216 + RMER4B LTR ERVK 10 291 -294 4 1246 434 136 0 0 chr4 86671916 86671997 -68958123 + RMER4B LTR ERVK 497 577 -8 4 1246 189 0 0 0 chr4 86672167 86672188 -68957932 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 4 1246 525 104 0 0 chr4 86672480 86672557 -68957563 + (GGA)n Simple_repeat Simple_repeat 3 79 0 4 1246 328 314 92 32 chr4 86673541 86673791 -68956329 + MIRb SINE MIR 4 268 0 4 1246 289 355 19 0 chr4 86675008 86675115 -68955005 + MIRm SINE MIR 39 147 -129 4 1246 796 250 5 20 chr4 86675367 86675563 -68954557 + B3A SINE B2 1 193 -5 4 1246 400 200 94 62 chr4 86675782 86675878 -68954242 + PB1D7 SINE Alu 27 125 -2 4 1246 1243 54 0 0 chr4 86676253 86676400 -68953720 + B1_Mm SINE Alu 1 147 0 4 1246 198 0 0 0 chr4 86676794 86676816 -68953304 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1246 624 293 158 0 chr4 86677416 86677662 -68952458 - B4A SINE B4 -4 288 4 4 1246 651 260 7 0 chr4 86679538 86679684 -68950436 - RSINE1 SINE B4 -17 148 2 4 1246 314 276 42 119 chr4 86680051 86680244 -68949876 + MTEa LTR MaLR 198 375 -4 4 1246 540 0 0 0 chr4 86682262 86682322 -68947798 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1246 495 88 22 11 chr4 86684031 86684123 -68945997 + (TG)n Simple_repeat Simple_repeat 1 93 0 4 1246 207 0 0 0 chr4 86684941 86684964 -68945156 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1246 212 100 0 24 chr4 86686594 86686635 -68943485 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1246 717 163 0 0 chr4 86686818 86686953 -68943167 + CT-rich Low_complexity Low_complexity 4 138 0 4 1246 929 206 57 38 chr4 86686958 86687170 -68942950 - B3 SINE B2 0 216 1 4 1246 443 107 13 0 chr4 86687185 86687260 -68942860 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1246 294 367 0 30 chr4 86688409 86688541 -68941579 + L1MC LINE L1 5517 5644 -2238 4 1246 881 123 167 83 chr4 86688568 86688772 -68941348 + URR1B DNA MER1_type 5 225 0 4 1246 387 278 173 21 chr4 86690893 86691084 -68939036 + MLT1J LTR MaLR 260 479 -33 4 1246 668 264 14 0 chr4 86691852 86691992 -68938128 - RSINE1 SINE B4 -17 148 7 4 1246 25 0 0 0 chr4 86697144 86697169 -68932951 + AT_rich Low_complexity Low_complexity 1 25 0 4 1246 203 0 37 0 chr4 86698439 86698466 -68931654 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1246 858 142 14 28 chr4 86698483 86698628 -68931492 - B1_Mur4 SINE Alu -7 143 1 4 1246 199 389 31 16 chr4 86699685 86699813 -68930307 + MIRb SINE MIR 9 138 -130 4 1246 274 294 78 52 chr4 86701011 86701039 -68929081 + YREP_Mm Unknown Unknown 147 301 -1508 4 1246 435 295 0 8 chr4 86701039 86701162 -68928958 - ID_B1 SINE B4 -9 215 94 4 1246 581 180 53 0 chr4 86701301 86701433 -68928687 - B1_Mur3 SINE Alu 0 149 9 4 1246 286 338 28 41 chr4 86701304 86701449 -68928671 - B4 SINE B4 -69 223 81 4 1246 310 223 0 87 chr4 86702360 86702463 -68927657 + MLT1A1 LTR MaLR 315 408 0 4 1246 243 0 0 0 chr4 86702567 86702594 -68927526 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1246 1105 72 0 0 chr4 86702594 86702732 -68927388 - B1_Mus2 SINE Alu -8 139 2 4 1246 243 0 0 0 chr4 86704133 86704160 -68925960 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1246 241 309 12 23 chr4 86704165 86704251 -68925869 + MIRb SINE MIR 106 190 -78 4 1246 237 329 0 48 chr4 86706426 86706509 -68923611 - ID4_ SINE ID 0 83 5 4 1246 816 200 138 21 chr4 86706684 86706873 -68923247 - B3 SINE B2 -1 215 5 4 1246 604 266 32 32 chr4 86706888 86707078 -68923042 + ORR1D2 LTR MaLR 89 278 -92 4 1246 824 242 52 45 chr4 86709019 86709309 -68920811 + B4A SINE B4 1 292 0 4 1246 400 236 6 6 chr4 86709309 86709467 -68920653 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 1246 269 271 8 0 chr4 86709486 86709608 -68920512 + (CA)n Simple_repeat Simple_repeat 1 123 0 4 1246 1157 103 6 0 chr4 86710180 86710355 -68919765 + (TTC)n Simple_repeat Simple_repeat 1 176 0 4 1246 678 84 0 0 chr4 86710842 86710949 -68919171 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 4 1246 432 37 0 0 chr4 86711617 86711671 -68918449 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1246 228 333 17 17 chr4 86712501 86712620 -68917500 + GA-rich Low_complexity Low_complexity 5 123 0 4 1246 1054 156 235 4 chr4 86712696 86712942 -68917178 - MTC LTR MaLR -14 407 113 4 1246 212 59 0 29 chr4 86712992 86713027 -68917093 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1246 184 205 0 0 chr4 86713094 86713133 -68916987 - MIRb SINE MIR -97 171 133 4 1246 448 342 196 3 chr4 86714611 86714937 -68915183 + MLT1H1 LTR MaLR 86 474 -81 4 1246 198 0 0 0 chr4 86715426 86715448 -68914672 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1246 378 0 0 0 chr4 86715886 86715928 -68914192 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1246 456 132 0 0 chr4 86715963 86716046 -68914074 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 1246 473 264 24 0 chr4 86716067 86716192 -68913928 - MIR SINE MIR -121 141 14 4 1246 199 321 0 13 chr4 86717056 86717135 -68912985 - MIR SINE MIR -71 137 60 4 1246 1012 119 12 0 chr4 86717289 86717457 -68912663 + (TC)n Simple_repeat Simple_repeat 1 170 0 4 1246 213 39 0 0 chr4 86720183 86720209 -68909911 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1246 884 173 0 0 chr4 86720209 86720348 -68909772 - B1_Mur2 SINE Alu -10 139 1 4 1246 1475 58 5 11 chr4 86720682 86720873 -68909247 - B2_Mm1t SINE B2 -3 190 1 4 1246 420 188 0 24 chr4 86722416 86722498 -68907622 - B2_Mm2 SINE B2 -111 84 5 4 1246 340 303 0 0 chr4 86725843 86725932 -68904188 + MIR SINE MIR 66 154 -108 4 1246 290 301 0 14 chr4 86726960 86727034 -68903086 - RSINE1 SINE B4 -6 159 87 4 1246 192 40 0 0 chr4 86727034 86727059 -68903061 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1246 750 66 9 0 chr4 86727060 86727166 -68902954 - B1_Mm SINE Alu 0 147 41 4 1246 253 242 31 52 chr4 86727278 86727374 -68902746 - Charlie7a DNA MER1_type -170 102 9 4 1246 241 224 103 0 chr4 86728058 86728116 -68902004 - ID2 SINE ID -5 78 15 4 1246 622 24 12 12 chr4 86728167 86728252 -68901868 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1246 595 208 121 0 chr4 86728360 86728509 -68901611 - B4A SINE B4 -124 168 2 4 1246 224 317 118 33 chr4 86728597 86728757 -68901363 - MIRb SINE MIR -60 208 30 4 1246 371 258 8 75 chr4 86729420 86729554 -68900566 - L2a LINE L2 0 3426 3302 4 1246 222 333 27 82 chr4 86729422 86729605 -68900515 - MIRm SINE MIR 0 276 104 4 1246 1369 264 22 19 chr4 86730805 86731168 -68898952 + MTEa LTR MaLR 16 379 0 4 1246 799 288 75 25 chr4 86731534 86732084 -68898036 - L1MD LINE L1 -671 5688 5111 4 1246 261 299 45 22 chr4 86732156 86732245 -68897875 - RSINE1 SINE B4 0 165 75 4 1246 230 260 20 0 chr4 86732440 86732490 -68897630 - ID4_ SINE ID -4 79 29 4 1246 432 55 0 0 chr4 86733707 86733762 -68896358 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1246 557 292 0 19 chr4 86734034 86734191 -68895929 - RSINE1 SINE B4 0 165 12 4 1246 247 49 49 0 chr4 86735441 86735482 -68894638 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 4 1246 231 253 168 0 chr4 86735539 86735634 -68894486 - MIRb SINE MIR -103 165 55 4 1246 570 200 9 0 chr4 86736053 86736158 -68893962 - PB1D9 SINE Alu -14 106 1 5 1246 532 279 94 71 chr4 86736212 86736478 -68893642 + B4A SINE B4 3 274 -18 5 1246 294 73 0 0 chr4 86736544 86736585 -68893535 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1246 4176 124 11 3 chr4 86737502 86738165 -68891955 + RLTR33 LTR ERVK 3 670 -8 5 1246 259 300 25 0 chr4 86738203 86738283 -68891837 + MLT1H LTR MaLR 131 212 -337 5 1246 916 297 33 62 chr4 86739023 86739511 -68890609 + Lx8 LINE L1 6998 7471 -2 5 1246 321 233 14 36 chr4 86739990 86740061 -68890059 + A-rich Low_complexity Low_complexity 2 69 0 5 1246 543 31 0 0 chr4 86740061 86740126 -68889994 + (CCAA)n Simple_repeat Simple_repeat 2 66 0 5 1246 321 233 14 36 chr4 86740126 86740192 -68889928 + A-rich Low_complexity Low_complexity 70 136 0 5 1246 252 0 0 0 chr4 86740298 86740326 -68889794 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1246 1389 35 17 23 chr4 86740431 86740607 -68889513 + B2_Mm2 SINE B2 3 177 -18 5 1246 235 267 11 95 chr4 86741131 86741226 -68888894 + L2 LINE L2 2360 2446 -973 5 1246 688 267 5 46 chr4 86741360 86741556 -68888564 - B3A SINE B2 -4 194 7 5 1246 279 0 0 0 chr4 86742868 86742899 -68887221 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1246 446 279 12 81 chr4 86742902 86743062 -68887058 - RSINE1 SINE B4 -14 151 3 5 1246 189 74 0 0 chr4 86743072 86743099 -68887021 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1246 524 140 226 0 chr4 86743269 86743362 -68886758 + Lx8 LINE L1 6327 6440 -1033 5 1246 8873 80 5 1 chr4 86744060 86745951 -68884169 + L1_Mus1 LINE L1 4675 6654 0 5 1246 1104 141 141 0 chr4 86745969 86746167 -68883953 + URR1A DNA MER1_type 1 226 0 5 1246 2858 183 29 177 chr4 86746618 86747483 -68882637 + RMER1A Other Other 58 794 -236 5 1246 840 195 104 35 chr4 86747658 86747860 -68882260 - B3 SINE B2 0 216 1 5 1246 192 77 0 0 chr4 86748488 86748514 -68881606 + (TTC)n Simple_repeat Simple_repeat 2 27 0 5 1246 252 184 0 0 chr4 86748853 86748902 -68881218 + (CACG)n Simple_repeat Simple_repeat 1 49 0 5 1246 413 92 0 0 chr4 86749269 86749334 -68880786 + BGLII LTR ERVK 250 314 -107 5 1246 231 207 0 0 chr4 86750604 86750662 -68879458 + T-rich Low_complexity Low_complexity 1 58 0 5 1246 219 69 0 0 chr4 86750727 86750756 -68879364 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1246 231 175 0 0 chr4 86750803 86750860 -68879260 + A-rich Low_complexity Low_complexity 1 57 0 5 1246 1595 238 44 22 chr4 86751613 86752021 -68878099 + MTD LTR MaLR 3 419 0 5 1246 233 342 88 7 chr4 86752413 86752560 -68877560 - MIRb SINE MIR -35 233 75 5 1246 291 256 0 75 chr4 86754487 86754580 -68875540 - Lx9 LINE L1 -175 7469 7384 5 1246 1549 266 18 41 chr4 86754589 86755028 -68875092 + Lx9 LINE L1 6927 7355 -289 5 1246 346 212 65 75 chr4 86755392 86755499 -68874621 - MamSINE1 SINE tRNA -146 144 39 5 1246 221 165 52 60 chr4 86756432 86756548 -68873572 + (CAAAC)n Simple_repeat Simple_repeat 2 116 0 5 1246 198 0 0 0 chr4 86756567 86756589 -68873531 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1246 501 191 124 0 chr4 86756990 86757095 -68873025 - B1_Mur2 SINE Alu -29 120 3 5 1246 420 306 89 30 chr4 86757263 86757465 -68872655 + MLT1D LTR MaLR 7 220 -285 5 1246 966 161 88 5 chr4 86758036 86758229 -68871891 - B3 SINE B2 -1 215 7 5 1246 237 256 74 128 chr4 86758708 86758856 -68871264 - ORR1E LTR MaLR -40 319 180 5 1246 577 273 28 33 chr4 86758894 86759076 -68871044 - RMER30 DNA MER1_type -9 193 13 5 1246 723 308 55 4 chr4 86759544 86759798 -68870322 - L1ME1 LINE L1 -6 6173 5907 5 1246 294 197 155 0 chr4 86759845 86759916 -68870204 - ID4 SINE ID 0 83 2 5 1246 446 186 59 0 chr4 86759919 86760021 -68870099 - PB1D10 SINE Alu -4 113 6 5 1246 301 267 196 12 chr4 86761136 86761299 -68868821 + Tigger15a DNA TcMar 519 711 -4 5 1246 1164 187 9 18 chr4 86762193 86762411 -68867709 + B3 SINE B2 1 216 0 5 1246 822 175 180 33 chr4 86762553 86762736 -68867384 - B3 SINE B2 -6 210 1 5 1246 216 0 0 0 chr4 86763831 86763855 -68866265 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 5 1246 402 233 265 33 chr4 86763885 86764036 -68866084 - B3A SINE B2 -11 187 2 5 1246 942 231 72 34 chr4 86764861 86765152 -68864968 + L1MA6 LINE L1 5999 6300 0 5 1246 383 325 84 11 chr4 86765224 86765414 -68864706 + MLT1C LTR MaLR 257 460 -7 5 1246 7144 119 47 2 chr4 86766580 86767903 -68862217 + Lx2 LINE L1 5489 6981 -19 5 1246 450 241 78 7 chr4 86769257 86769399 -68860721 - MER33 DNA MER1_type -1 323 172 5 1247 204 122 0 0 chr4 86769841 86769882 -68860238 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1247 185 361 0 20 chr4 86770378 86770477 -68859643 - MIRc SINE MIR -130 138 42 5 1247 1355 149 8 51 chr4 86770574 86770808 -68859312 + URR1B DNA MER1_type 1 224 -1 5 1247 318 275 124 30 chr4 86771285 86771579 -68858541 + MLT1C LTR MaLR 33 372 -133 5 1247 180 111 0 0 chr4 86771612 86771639 -68858481 + (ATGGTG)n Simple_repeat Simple_repeat 6 32 0 5 1247 251 203 14 0 chr4 86771637 86771706 -68858414 + GA-rich Low_complexity Low_complexity 2 71 0 5 1247 911 205 29 39 chr4 86772229 86772437 -68857683 - B3 SINE B2 -10 206 1 5 1247 1481 120 58 0 chr4 86773530 86773772 -68856348 + MT2B LTR ERVL 1 256 -345 5 1247 247 275 157 8 chr4 86773682 86773803 -68856317 + B4 SINE B4 88 226 -66 5 1247 712 86 0 0 chr4 86773804 86773898 -68856222 + Lx4B LINE L1 5924 6017 -1041 5 1247 3502 130 31 21 chr4 86773898 86774478 -68855642 + Lx4A LINE L1 6473 7058 0 5 1247 706 113 9 0 chr4 86774478 86774489 -68855631 + Lx4B LINE L1 6018 6029 -1029 5 1247 728 194 60 0 chr4 86774780 86774914 -68855206 + B1_Mur1 SINE Alu 1 142 -7 5 1247 22 35 0 0 chr4 86774973 86775002 -68855118 + AT_rich Low_complexity Low_complexity 1 29 0 5 1247 22 0 0 0 chr4 86775254 86775276 -68854844 + AT_rich Low_complexity Low_complexity 1 22 0 5 1247 360 0 0 0 chr4 86775797 86775837 -68854283 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1247 1080 72 0 0 chr4 86775837 86775990 -68854130 - B2_Mm2 SINE B2 -42 153 1 5 1247 245 353 53 0 chr4 86776486 86776656 -68853464 + L2a LINE L2 3183 3361 -65 5 1247 207 139 0 0 chr4 86776786 86776822 -68853298 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 5 1247 185 0 40 0 chr4 86777598 86777623 -68852497 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1247 221 0 0 33 chr4 86777956 86777986 -68852134 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1247 195 152 0 0 chr4 86779663 86779709 -68850411 + T-rich Low_complexity Low_complexity 1 46 0 5 1247 4943 28 0 0 chr4 86779825 86780360 -68849760 - L1Md_T LINE L1 0 6582 6048 5 1247 244 247 39 106 chr4 86780784 86780888 -68849232 + AmnSINE1 SINE SINE 462 558 -17 5 1247 300 280 72 57 chr4 86780939 86781079 -68849041 + MIR SINE MIR 18 150 -58 5 1247 231 255 78 48 chr4 86781536 86781639 -68848481 + MLT2B2 LTR ERVL 1 106 -409 5 1247 216 97 0 0 chr4 86781908 86781939 -68848181 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1247 1448 138 42 0 chr4 86782505 86782722 -68847398 + URR1A DNA MER1_type 1 226 0 5 1247 216 0 0 0 chr4 86782728 86782752 -68847368 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 5 1247 1108 229 5 5 chr4 86782780 86782991 -68847129 + B3 SINE B2 6 216 0 5 1247 3503 40 15 12 chr4 86783072 86783482 -68846638 + IAPLTR2a LTR ERVK 1 411 0 5 1247 300 197 49 0 chr4 86784762 86784823 -68845297 + L1MA5 LINE L1 6234 6297 -3 5 1247 27 29 0 0 chr4 86785061 86785095 -68845025 + AT_rich Low_complexity Low_complexity 1 34 0 5 1247 869 191 74 6 chr4 86785266 86785429 -68844691 + B3 SINE B2 3 176 -40 5 1247 200 270 68 0 chr4 86786832 86786906 -68843214 - MIR SINE MIR -77 131 53 5 1247 788 282 14 73 chr4 86787684 86787959 -68842161 - B4 SINE B4 -32 260 2 5 1247 465 19 0 0 chr4 86789619 86789673 -68840447 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1247 360 0 0 0 chr4 86789673 86789712 -68840408 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1247 321 266 13 0 chr4 86789717 86789796 -68840324 - ID_B1 SINE B4 -54 170 91 5 1247 737 200 125 36 chr4 86789850 86790042 -68840078 - MLT1D LTR MaLR -283 222 14 5 1247 572 292 49 38 chr4 86790073 86790258 -68839862 + LTR16C LTR ERVL 286 472 -17 5 1247 361 306 80 16 chr4 86790650 86790878 -68839242 - MIR SINE MIR -24 244 12 5 1247 1251 249 22 108 chr4 86791816 86792231 -68837889 + MTE2a LTR MaLR 1 379 0 5 1247 736 276 6 33 chr4 86792546 86792726 -68837394 + B3A SINE B2 1 175 -23 5 1247 204 40 0 0 chr4 86792726 86792751 -68837369 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1247 278 205 38 13 chr4 86792753 86792832 -68837288 - MER113 DNA MER1_type -130 391 311 5 1247 225 65 0 0 chr4 86792960 86792991 -68837129 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1247 1259 101 84 0 chr4 86793187 86793366 -68836754 - B2_Mm2 SINE B2 -1 194 1 5 1247 401 296 72 22 chr4 86794842 86794980 -68835140 + B3A SINE B2 1 145 -50 5 1247 681 76 0 0 chr4 86794983 86795075 -68835045 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1247 270 0 0 0 chr4 86795075 86795104 -68835016 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1247 1342 242 122 23 chr4 86795735 86796178 -68833942 + RLTR40 LTR ERVK 1 487 -330 6 1247 474 183 50 16 chr4 86796459 86796637 -68833483 + RLTR40 LTR ERVK 490 757 -60 6 1247 232 167 21 0 chr4 86797133 86797181 -68832939 + Charlie1 DNA MER1_type 2678 2726 -55 6 1247 467 186 105 0 chr4 86797425 86797549 -68832571 + MER2 DNA MER2_type 140 276 -69 6 1247 364 272 43 0 chr4 86797594 86797686 -68832434 + Charlie1 DNA MER1_type 103 198 -2583 6 1247 373 189 21 21 chr4 86797702 86797799 -68832321 + Charlie1 DNA MER1_type 2648 2744 -37 6 1247 249 419 29 23 chr4 86798856 86799027 -68831093 + L2a LINE L2 2910 3081 -345 6 1247 297 229 0 16 chr4 86799038 86799097 -68831023 - MER20 DNA MER1_type -31 188 131 6 1247 415 340 22 58 chr4 86799097 86799372 -68830748 + B4A SINE B4 2 260 -32 6 1247 384 22 0 0 chr4 86799402 86799447 -68830673 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1247 455 267 157 8 chr4 86799449 86799570 -68830550 - MER20 DNA MER1_type -80 139 1 6 1247 391 302 70 35 chr4 86799570 86799769 -68830351 + L2a LINE L2 3079 3284 -142 6 1247 323 128 80 52 chr4 86800256 86800349 -68829771 - L1_Mus2 LINE L1 -4 6578 6483 6 1247 330 26 0 0 chr4 86800715 86800754 -68829366 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1247 869 191 118 36 chr4 86801312 86801507 -68828613 - B3 SINE B2 -5 211 1 6 1247 1200 236 115 16 chr4 86801543 86801857 -68828263 + MTE2a LTR MaLR 4 348 -31 6 1247 384 290 0 70 chr4 86801898 86802013 -68828107 - B1F1 SINE Alu -13 107 1 6 1247 236 350 0 48 chr4 86801922 86802027 -68828093 - ID_B1 SINE B4 -55 169 70 6 1247 2013 114 103 3 chr4 86802311 86802662 -68827458 - ORR1B1 LTR MaLR -8 386 1 6 1247 23 0 0 0 chr4 86803142 86803165 -68826955 + AT_rich Low_complexity Low_complexity 1 23 0 6 1247 508 169 25 0 chr4 86803681 86803799 -68826321 + Lx9 LINE L1 7524 7644 0 6 1247 232 0 39 59 chr4 86804721 86804772 -68825348 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 6 1247 228 287 0 84 chr4 86805168 86805263 -68824857 + polypyrimidine Low_complexity Low_complexity 6 92 0 6 1247 363 203 0 108 chr4 86805281 86805364 -68824756 - PB1D10 SINE Alu -12 105 32 6 1247 22 0 0 0 chr4 86805408 86805430 -68824690 + AT_rich Low_complexity Low_complexity 1 22 0 6 1247 729 250 7 0 chr4 86805433 86805577 -68824543 - B1_Mur1 SINE Alu -4 145 1 6 1247 1214 238 121 27 chr4 86805748 86806120 -68824000 + MTD LTR MaLR 11 417 -2 6 1247 184 30 61 0 chr4 86806957 86806990 -68823130 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1247 356 256 17 44 chr4 86807005 86807236 -68822884 + (TG)n Simple_repeat Simple_repeat 1 224 0 6 1247 376 299 6 28 chr4 86807277 86807456 -68822664 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1247 202 211 0 0 chr4 86807758 86807796 -68822324 + GA-rich Low_complexity Low_complexity 3 40 0 6 1247 223 140 20 20 chr4 86808561 86808612 -68821508 + CT-rich Low_complexity Low_complexity 2 52 0 6 1247 511 254 111 70 chr4 86811645 86811844 -68818276 + MER20 DNA MER1_type 13 219 0 6 1247 198 71 0 0 chr4 86812526 86812554 -68817566 + (CAACC)n Simple_repeat Simple_repeat 1 28 0 6 1247 198 103 0 0 chr4 86813596 86813625 -68816495 + (GGAAA)n Simple_repeat Simple_repeat 3 31 0 6 1247 232 287 36 36 chr4 86814179 86814291 -68815829 + L2a LINE L2 3219 3330 -96 6 1247 428 216 0 0 chr4 86814548 86814622 -68815498 - RSINE1 SINE B4 -22 143 70 6 1247 383 222 0 0 chr4 86814933 86815005 -68815115 - RSINE1 SINE B4 -91 74 3 6 1247 292 115 66 0 chr4 86815464 86815525 -68814595 + CT-rich Low_complexity Low_complexity 2 66 0 6 1247 14119 86 53 10 chr4 86815598 86818385 -68811735 - L1VL2 LINE L1 -628 2987 66 6 1247 429 20 0 0 chr4 86818602 86818652 -68811468 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1247 207 0 0 0 chr4 86819435 86819458 -68810662 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1247 335 333 36 77 chr4 86820147 86820342 -68809778 + MLT1A LTR MaLR 1 187 -187 6 1247 471 141 0 0 chr4 86820342 86820420 -68809700 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 6 1247 202 150 0 24 chr4 86820453 86820494 -68809626 + A-rich Low_complexity Low_complexity 4 43 0 6 1247 436 285 45 15 chr4 86820495 86820627 -68809493 + MLT1A LTR MaLR 223 358 -16 6 1247 24 32 0 0 chr4 86820795 86820826 -68809294 + AT_rich Low_complexity Low_complexity 1 31 0 6 1247 256 158 0 0 chr4 86821076 86821114 -68809006 + B3A SINE B2 1 38 -160 6 1247 404 0 39 0 chr4 86821179 86821230 -68808890 + (CTCA)n Simple_repeat Simple_repeat 2 54 0 6 1247 468 254 96 65 chr4 86822500 86822680 -68807440 - B3A SINE B2 -32 184 2 6 1247 369 131 0 0 chr4 86824082 86824143 -68805977 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 6 1247 467 325 52 35 chr4 86824180 86824352 -68805768 - B4A SINE B4 -117 175 1 6 1247 249 311 72 77 chr4 86824402 86824597 -68805523 + L1ME3A LINE L1 2062 2255 -3987 6 1247 3459 203 104 39 chr4 86824660 86825541 -68804579 + Lx9 LINE L1 6698 7636 -8 6 1247 251 300 20 10 chr4 86825630 86825731 -68804389 + L1ME3A LINE L1 2440 2541 -3605 6 1247 675 316 76 26 chr4 86825871 86826173 -68803947 - Zaphod DNA Tip100 -16 4015 3699 6 1247 353 117 0 16 chr4 86826316 86826377 -68803743 + (TTA)n Simple_repeat Simple_repeat 1 60 0 6 1247 1463 313 5 17 chr4 86826377 86826787 -68803333 - Lx5 LINE L1 -17 7033 6629 6 1247 276 267 43 68 chr4 86827160 86827323 -68802797 + L1ME3A LINE L1 4131 4289 -1857 6 1247 271 312 79 6 chr4 86827446 86827623 -68802497 + L1ME3A LINE L1 4471 4660 -1486 6 1247 881 228 58 24 chr4 86827675 86827882 -68802238 + B3 SINE B2 3 216 0 6 1247 284 281 93 33 chr4 86828099 86828250 -68801870 + L1ME3A LINE L1 5073 5232 -914 6 1247 533 312 117 24 chr4 86828363 86828776 -68801344 + L1ME3A LINE L1 5405 5874 -288 6 1247 687 244 25 15 chr4 86828792 86828996 -68801124 + L1M2 LINE L1 4933 5138 -1005 6 1247 772 289 133 42 chr4 86829506 86830137 -68799983 + L1PB4 LINE L1 5233 5939 -217 6 1247 186 43 0 0 chr4 86830238 86830261 -68799859 + (GGA)n Simple_repeat Simple_repeat 2 24 0 6 1247 264 295 51 31 chr4 86830452 86830550 -68799570 + L1ME3A LINE L1 6007 6106 -67 6 1247 466 285 94 51 chr4 86830953 86831208 -68798912 + LTR50 LTR ERVL 24 289 -506 6 1247 588 271 122 18 chr4 86831277 86831506 -68798614 + LTR50 LTR ERVL 541 793 -2 6 1247 3620 33 2 2 chr4 86831708 86832104 -68798016 + MTA_Mm LTR MaLR 1 396 0 6 1247 4540 11 0 0 chr4 86832992 86833469 -68796651 - L1Md_A LINE L1 0 6582 6106 6 1247 4194 17 0 1 chr4 86833469 86833943 -68796177 + L1Md_A LINE L1 5641 6452 -556 6 1247 612 276 167 20 chr4 86834575 86834826 -68795294 + B4A SINE B4 1 288 -4 6 1247 306 0 0 0 chr4 86834865 86834899 -68795221 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1247 372 387 23 32 chr4 86835522 86835741 -68794379 - MER102a DNA MER1_type -73 257 41 6 1247 371 272 127 8 chr4 86836034 86836160 -68793960 + MER5A DNA MER1_type 49 189 0 6 1247 1111 276 61 3 chr4 86836496 86836809 -68793311 - Lx8 LINE L1 -704 6769 6439 6 1247 922 324 91 49 chr4 86836825 86837433 -68792687 + Lx8 LINE L1 6796 7428 -45 6 1247 943 145 0 11 chr4 86837920 86838094 -68792026 + GA-rich Low_complexity Low_complexity 2 173 0 6 1247 792 0 0 0 chr4 86838122 86838210 -68791910 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1247 582 15 0 0 chr4 86838581 86838648 -68791472 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 6 1247 704 120 0 31 chr4 86838684 86838813 -68791307 - L1Md_F2 LINE L1 -2 6580 6456 6 1247 1240 57 0 0 chr4 86838831 86838971 -68791149 - B1_Mm SINE Alu -7 140 1 6 1247 1329 70 0 6 chr4 86838993 86839165 -68790955 - L1Md_F3 LINE L1 0 6584 6414 6 1247 619 312 58 102 chr4 86839496 86839561 -68790559 - B4A SINE B4 -8 284 224 6 1247 212 0 36 0 chr4 86839561 86839589 -68790531 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1247 946 165 0 0 chr4 86839589 86839722 -68790398 - B1_Mur2 SINE Alu -12 137 5 6 1247 619 312 58 102 chr4 86839722 86839948 -68790172 - B4A SINE B4 -69 223 6 6 1247 269 282 311 0 chr4 86840094 86840197 -68789923 + MIRb SINE MIR 108 242 -26 6 1247 435 274 87 57 chr4 86840443 86840674 -68789446 - MIR SINE MIR -29 233 3 6 1247 1521 212 64 20 chr4 86841007 86841349 -68788771 + ORR1D1 LTR MaLR 16 372 -2 6 1247 201 240 75 62 chr4 86841678 86841758 -68788362 + MIRm SINE MIR 22 102 -174 6 1247 459 219 15 8 chr4 86842145 86842263 -68787857 + B1_Mur1 SINE Alu 16 136 -13 6 1247 186 43 0 0 chr4 86842265 86842288 -68787832 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1247 681 241 57 0 chr4 86842820 86842961 -68787159 + B1F SINE Alu 1 149 0 6 1247 364 331 32 11 chr4 86842987 86843176 -68786944 + MER53 DNA hAT 1 193 0 6 1247 235 384 108 50 chr4 86843510 86843751 -68786369 - MLT1D LTR MaLR -52 453 199 6 1247 786 73 31 39 chr4 86844474 86844603 -68785517 - Lx LINE L1 -6 6648 6521 6 1247 229 271 68 41 chr4 86844795 86844868 -68785252 - MER5B DNA MER1_type -99 79 5 6 1247 190 346 18 36 chr4 86845778 86845889 -68784231 + MIRb SINE MIR 30 138 -130 6 1247 949 266 40 22 chr4 86845997 86846271 -68783849 + MTD LTR MaLR 1 316 -63 6 1247 314 364 98 0 chr4 86846319 86846462 -68783658 - MIR SINE MIR -81 181 25 6 1247 313 361 226 0 chr4 86847600 86847808 -68782312 + MIR SINE MIR 2 256 -6 6 1247 302 282 101 84 chr4 86848232 86848410 -68781710 + MamRep605 Unknown Unknown 500 680 -196 6 1247 231 296 61 12 chr4 86848493 86848575 -68781545 + MamRep605 Unknown Unknown 682 767 -109 6 1247 197 349 53 44 chr4 86848648 86848762 -68781358 + MIRm SINE MIR 160 274 -2 6 1247 10638 23 3 1 chr4 86848966 86850878 -68779242 - L1Md_T LINE L1 0 6582 4668 6 1247 307 302 48 48 chr4 86851037 86851162 -68778958 - MLT1E3 LTR MaLR 0 624 500 6 1247 1425 86 0 31 chr4 86851780 86851972 -68778148 - B2_Mm2 SINE B2 -9 186 1 6 1247 285 29 0 0 chr4 86852142 86852176 -68777944 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1247 321 275 151 62 chr4 86854073 86854364 -68775756 + L2 LINE L2 1495 1811 -1608 6 1247 481 221 17 0 chr4 86854376 86854484 -68775636 + B1F SINE Alu 10 127 0 6 1247 729 239 92 27 chr4 86854540 86854725 -68775395 - B3A SINE B2 0 198 2 6 1247 642 328 149 45 chr4 86854738 86855450 -68774670 + L2 LINE L2 1991 2776 -643 6 1247 375 23 0 0 chr4 86855857 86855901 -68774219 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1247 277 272 22 0 chr4 86855902 86856017 -68774103 + (TA)n Simple_repeat Simple_repeat 1 117 0 6 1247 196 275 86 12 chr4 86856601 86856682 -68773438 - MIRc SINE MIR -60 208 122 6 1247 423 0 0 0 chr4 86857948 86857995 -68772125 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1247 1043 243 14 23 chr4 86858075 86858290 -68771830 + B3 SINE B2 1 213 -3 6 1247 445 247 82 20 chr4 86858750 86859033 -68771087 + L1MB7 LINE L1 5201 5523 -661 6 1247 219 355 26 52 chr4 86859035 86859151 -68770969 + PB1D10 SINE Alu 5 117 0 7 1247 1177 294 139 7 chr4 86859188 86859777 -68770343 + L1MB7 LINE L1 5518 6184 0 6 1247 252 0 0 0 chr4 86860470 86860498 -68769622 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 7 1247 345 24 0 0 chr4 86860501 86860543 -68769577 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 7 1247 795 126 0 0 chr4 86860923 86861050 -68769070 + (TC)n Simple_repeat Simple_repeat 1 127 0 7 1247 195 146 0 0 chr4 86861068 86861109 -68769011 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1247 460 195 50 37 chr4 86861111 86861238 -68768882 - B1F SINE Alu -11 138 11 7 1247 573 289 104 14 chr4 86861504 86861715 -68768405 + MER2 DNA MER2_type 28 257 -88 7 1247 1492 211 50 91 chr4 86862207 86862625 -68767495 - MTD LTR MaLR -1 418 18 7 1247 230 156 0 0 chr4 86862642 86862687 -68767433 + (CAA)n Simple_repeat Simple_repeat 2 46 0 7 1247 384 22 0 0 chr4 86862871 86862916 -68767204 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1247 404 289 28 28 chr4 86863140 86863247 -68766873 + RSINE1 SINE B4 5 111 -54 7 1247 297 0 0 0 chr4 86863257 86863290 -68766830 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1247 411 73 0 0 chr4 86863292 86863347 -68766773 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1247 240 410 8 47 chr4 86863362 86863490 -68766630 - MER91A DNA Tip100 -49 147 25 7 1247 248 135 0 0 chr4 86863743 86863780 -68766340 + tRNA-Arg-AGA tRNA tRNA 1 37 -39 7 1247 431 215 13 0 chr4 86863801 86863880 -68766240 + ID4 SINE ID 2 81 -2 7 1247 22 0 0 0 chr4 86863889 86863911 -68766209 + AT_rich Low_complexity Low_complexity 1 22 0 7 1247 238 318 30 0 chr4 86864016 86864082 -68766038 + MIRb SINE MIR 1 68 -200 7 1247 267 279 64 46 chr4 86864952 86865125 -68764995 + L1M5 LINE L1 5326 5501 -623 7 1247 21 0 0 0 chr4 86865353 86865374 -68764746 + AT_rich Low_complexity Low_complexity 1 21 0 7 1247 250 255 85 25 chr4 86866123 86866268 -68763852 + L1MEe LINE L1 2168 2335 -3831 7 1247 333 0 0 0 chr4 86866310 86866347 -68763773 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1247 432 0 0 0 chr4 86866347 86866394 -68763726 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1247 342 352 68 32 chr4 86866395 86866647 -68763473 - B4A SINE B4 -25 267 7 7 1247 230 260 62 38 chr4 86867113 86867193 -68762927 + PB1D10 SINE Alu 17 98 -19 7 1247 252 0 0 0 chr4 86867971 86867999 -68762121 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1247 273 29 0 0 chr4 86867999 86868032 -68762088 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1247 314 332 70 19 chr4 86868275 86868491 -68761629 - MIR SINE MIR -6 256 37 7 1247 1707 287 75 57 chr4 86868491 86869223 -68760897 + Lx8 LINE L1 5939 6683 -790 7 1247 1176 300 104 14 chr4 86869242 86869743 -68760377 + Lx8 LINE L1 6926 7471 -2 7 1247 430 329 14 35 chr4 86871314 86871459 -68758661 + RSINE1 SINE B4 24 165 0 7 1247 324 48 0 0 chr4 86871520 86871562 -68758558 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1247 331 250 0 38 chr4 86872152 86872259 -68757861 + ID4_ SINE ID 7 106 -46 7 1247 237 83 0 0 chr4 86872678 86872714 -68757406 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1247 619 236 123 4 chr4 86874032 86874202 -68755918 - B3A SINE B2 -3 213 26 7 1247 360 236 0 0 chr4 86874216 86874305 -68755815 + (TA)n Simple_repeat Simple_repeat 1 89 0 7 1247 326 127 0 25 chr4 86874306 86874387 -68755733 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 7 1247 261 83 0 0 chr4 86874450 86874486 -68755634 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1247 234 320 83 60 chr4 86877113 86877246 -68752874 - LTR81B LTR ERV1? -1100 293 158 7 1247 207 0 0 0 chr4 86877812 86877835 -68752285 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1247 1938 186 34 175 chr4 86878085 86878724 -68751396 + RMER15 LTR ERVL 27 575 0 7 1247 1176 96 0 0 chr4 86878743 86878889 -68751231 + B1_Mus1 SINE Alu 1 146 -2 7 1247 212 216 0 0 chr4 86878912 86878949 -68751171 + B1_Mus2 SINE Alu 33 69 -78 7 1247 2041 260 19 14 chr4 86878976 86879495 -68750625 - Lx8 LINE L1 -616 6857 6336 7 1247 244 325 175 0 chr4 86880419 86880533 -68749587 - MIRc SINE MIR -112 156 23 7 1247 405 0 0 0 chr4 86880793 86880838 -68749282 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 7 1247 266 286 125 16 chr4 86882276 86882404 -68747716 - HAL1 LINE L1 -985 1522 1381 7 1247 582 188 23 15 chr4 86882433 86882563 -68747557 - Lx7 LINE L1 0 7696 7566 7 1247 1781 167 7 16 chr4 86882545 86882849 -68747271 + Lx2 LINE L1 6697 6997 0 7 1247 3226 193 47 78 chr4 86882856 86883686 -68746434 - Lx7 LINE L1 -122 7574 6771 7 1247 696 24 0 0 chr4 86883691 86883773 -68746347 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 7 1247 588 14 0 0 chr4 86883774 86883843 -68746277 + (TTCTC)n Simple_repeat Simple_repeat 5 73 0 7 1247 542 137 179 0 chr4 86883843 86883938 -68746182 - B1_Mus1 SINE Alu -28 120 9 7 1247 374 43 21 0 chr4 86883938 86883985 -68746135 + L1Md_F2 LINE L1 5539 5586 -297 7 1247 8956 32 0 1 chr4 86883985 86884976 -68745144 + L1Md_F2 LINE L1 5587 6576 -6 7 1247 483 94 0 0 chr4 86885135 86885199 -68744921 - PB1D9 SINE Alu -56 64 1 7 1247 4966 206 67 25 chr4 86885204 86886331 -68743789 - Lx7 LINE L1 -935 6761 5587 7 1247 2644 176 42 32 chr4 86886339 86886672 -68743448 - Lx7 LINE L1 -2030 3850 3514 7 1247 1653 33 22 0 chr4 86886672 86886855 -68743265 - B2_Mm1a SINE B2 -6 187 1 7 1247 2644 176 42 32 chr4 86886855 86887045 -68743075 - Lx7 LINE L1 -2367 3513 3322 7 1247 569 136 82 0 chr4 86887041 86887151 -68742969 - L1_Mur3 LINE L1 -1470 4410 4292 7 1247 1256 90 7 0 chr4 86887154 86887435 -68742685 + (TG)n Simple_repeat Simple_repeat 1 283 0 7 1247 2088 158 40 33 chr4 86887436 86887984 -68742136 - Lx7 LINE L1 -4246 1634 1077 7 1247 295 251 3 3 chr4 86888212 86888287 -68741833 - ID4 SINE ID -56 96 22 7 1247 937 148 33 33 chr4 86888314 86888496 -68741624 - B2_Mm2 SINE B2 0 195 14 7 1247 435 256 22 1 chr4 86888953 86889058 -68741062 - PB1D10 SINE Alu -7 142 38 7 1247 278 271 55 47 chr4 86889471 86889599 -68740521 + MLT1A1 LTR MaLR 1 129 -279 7 1247 504 262 38 57 chr4 86890078 86890236 -68739884 - RSINE1 SINE B4 -8 157 3 7 1247 27 49 0 0 chr4 86890242 86890283 -68739837 + AT_rich Low_complexity Low_complexity 1 41 0 7 1247 612 286 57 79 chr4 86890766 86891118 -68739002 - MLT1C LTR MaLR -15 452 57 7 1247 2393 101 0 3 chr4 86891248 86891575 -68738545 - ORR1A2 LTR MaLR -1 326 1 7 1247 1100 170 22 48 chr4 86892339 86892568 -68737552 + URR1B DNA MER1_type 3 225 0 7 1247 560 274 112 9 chr4 86893951 86894173 -68735947 + B4A SINE B4 28 286 -6 7 1247 24329 19 0 1 chr4 86895011 86897986 -68732134 + L1Md_A LINE L1 2612 5585 -298 7 1247 8643 22 0 0 chr4 86897987 86898982 -68731138 + L1Md_A LINE L1 5587 6581 -1 7 1247 1215 271 112 40 chr4 86899230 86899536 -68730584 - L1M4 LINE L1 -1478 4668 4326 7 1247 674 24 12 0 chr4 86899536 86899620 -68730500 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 7 1247 1215 271 112 40 chr4 86899620 86900065 -68730055 - L1M4 LINE L1 -1821 4325 3863 7 155 985 219 24 19 chr4 86900572 86900777 -68729343 + B3 SINE B2 2 207 -9 7 1248 369 0 0 0 chr4 86900777 86900818 -68729302 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1248 4576 52 7 2 chr4 86901776 86902353 -68727767 + L1Md_F2 LINE L1 6003 6582 0 7 1248 1220 183 5 0 chr4 86902366 86902574 -68727546 + B3 SINE B2 2 210 -6 7 1248 599 156 158 39 chr4 86902605 86902732 -68727388 + B1_Mur4 SINE Alu 1 142 -8 7 1248 246 62 0 0 chr4 86902732 86902764 -68727356 + (CAG)n Simple_repeat Simple_repeat 1 32 0 7 1248 840 77 0 0 chr4 86902859 86902976 -68727144 + (TC)n Simple_repeat Simple_repeat 2 118 0 7 1248 225 0 0 0 chr4 86902976 86903000 -68727120 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1248 666 285 150 0 chr4 86903020 86903213 -68726907 - B4 SINE B4 -69 223 2 7 1248 411 21 0 0 chr4 86903467 86903515 -68726605 + (TATG)n Simple_repeat Simple_repeat 1 48 0 7 1248 3439 45 29 5 chr4 86903515 86903936 -68726184 + RLTR10C LTR ERVK 5 435 -1 7 1248 225 0 0 0 chr4 86903936 86903961 -68726159 + (TATG)n Simple_repeat Simple_repeat 3 27 0 7 1248 6864 138 67 46 chr4 86903961 86905691 -68724429 - Lx4B LINE L1 -21 7037 5254 7 1248 2173 114 75 3 chr4 86905682 86906068 -68724052 + Lx4B LINE L1 4891 5304 -573 7 1248 587 268 178 12 chr4 86906917 86907165 -68722955 + B4 SINE B4 1 289 -3 7 1248 566 316 35 35 chr4 86907353 86907664 -68722456 + MLT1A0 LTR MaLR 1 364 -26 7 1248 27 49 0 0 chr4 86907695 86907736 -68722384 + AT_rich Low_complexity Low_complexity 1 41 0 7 1248 262 321 82 15 chr4 86908141 86908337 -68721783 - L1MEg1 LINE L1 -4623 2710 2502 7 1248 236 307 95 13 chr4 86908455 86908759 -68721361 - L1MEg1 LINE L1 -5045 2288 1960 7 1248 368 284 11 0 chr4 86909158 86909253 -68720867 - L1MEg1 LINE L1 -5780 455 360 7 1248 3168 83 31 9 chr4 86909877 86910397 -68719723 - L1Md_F2 LINE L1 0 6582 6120 7 1248 342 0 0 0 chr4 86911268 86911306 -68718814 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1248 639 208 85 35 chr4 86911590 86911789 -68718331 + RMER20B LTR ERVK 128 335 -181 7 1248 899 161 142 6 chr4 86915511 86915673 -68714447 - MTD LTR MaLR 0 419 236 7 1248 347 127 16 0 chr4 86916163 86916226 -68713894 + (GGA)n Simple_repeat Simple_repeat 3 66 0 7 1248 1038 131 0 0 chr4 86916227 86916395 -68713725 + (GAA)n Simple_repeat Simple_repeat 2 169 0 7 1248 1857 173 50 12 chr4 86916445 86916784 -68713336 - MTC LTR MaLR 0 421 70 7 1248 4120 61 2 0 chr4 86916784 86917327 -68712793 + L1Md_F2 LINE L1 5042 5585 -298 7 1248 7956 50 10 3 chr4 86917328 86918316 -68711804 + L1Md_F2 LINE L1 5587 6581 -1 7 1248 260 192 39 0 chr4 86918316 86918368 -68711752 - MTC LTR MaLR -359 60 7 7 1248 477 253 102 37 chr4 86918427 86918673 -68711447 - L1MC4 LINE L1 0 8042 7781 7 1248 334 346 53 16 chr4 86919031 86919219 -68710901 + MamRep137 DNA TcMar? 121 315 -129 7 1248 2461 256 54 17 chr4 86921320 86922024 -68708096 - Lx8 LINE L1 -530 6943 6214 7 1248 24 0 0 0 chr4 86922041 86922065 -68708055 + AT_rich Low_complexity Low_complexity 1 24 0 7 1248 1614 213 110 8 chr4 86922686 86923051 -68707069 - MTD LTR MaLR 0 419 18 7 1248 25 0 0 0 chr4 86923159 86923184 -68706936 + AT_rich Low_complexity Low_complexity 1 25 0 7 1248 1138 68 7 0 chr4 86923184 86923331 -68706789 - B1_Mus1 SINE Alu 0 148 1 8 1248 291 18 0 111 chr4 86923786 86923849 -68706271 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 8 1248 1121 96 0 0 chr4 86923857 86924003 -68706117 - B1_Mm SINE Alu 0 147 2 8 1248 904 176 0 0 chr4 86924178 86924326 -68705794 + B1_Mur2 SINE Alu 1 148 -1 8 1248 191 290 71 14 chr4 86924339 86924409 -68705711 - MIRc SINE MIR -107 161 88 8 1248 185 309 132 0 chr4 86924448 86924516 -68705604 - L3 LINE CR1 -1300 3189 3113 8 1248 407 289 86 8 chr4 86926726 86926841 -68703279 + B1F1 SINE Alu 2 116 -1 8 1248 505 330 46 33 chr4 86927424 86928275 -68701845 - L1M2 LINE L1 -3387 3458 2592 8 1248 2094 142 119 0 chr4 86928275 86928627 -68701493 + ORR1B1 LTR MaLR 1 394 0 8 1248 486 311 53 46 chr4 86928627 86928932 -68701188 - L1M2 LINE L1 -4258 2591 2290 8 1248 576 329 79 32 chr4 86929868 86930373 -68699747 + ERVL-B4-int LTR ERVL 4050 4578 -1136 8 1248 314 379 29 19 chr4 86932155 86932365 -68697755 + L4 LINE RTE 1682 1893 -136 8 1248 24 53 0 0 chr4 86933152 86933190 -68696930 + AT_rich Low_complexity Low_complexity 1 38 0 8 1248 317 362 0 51 chr4 86933190 86933327 -68696793 - RSINE1 SINE B4 -5 160 31 8 1248 225 357 27 0 chr4 86933612 86933724 -68696396 - L2c LINE L2 -20 3367 3253 8 1248 3674 188 40 66 chr4 86934237 86935279 -68694841 - Lx5 LINE L1 0 7058 6059 8 1248 297 346 10 0 chr4 86935314 86935415 -68694705 + PB1D10 SINE Alu 11 112 -5 8 1248 988 317 10 17 chr4 86936681 86936973 -68693147 - B4A SINE B4 0 292 3 8 1248 424 288 138 11 chr4 86937066 86937575 -68692545 - L1M5 LINE L1 -591 5588 5011 8 1248 314 98 20 0 chr4 86938314 86938365 -68691755 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1248 743 279 157 4 chr4 86938447 86939052 -68691068 - L1M5 LINE L1 -2163 3983 3292 8 1248 938 220 228 23 chr4 86939102 86939409 -68690711 - ORR1D2 LTR MaLR 0 370 1 8 1248 3175 238 121 34 chr4 86939409 86939757 -68690363 - ORR1D2-int LTR MaLR 0 1370 997 8 1248 423 0 0 0 chr4 86939757 86939804 -68690316 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1248 3175 238 121 34 chr4 86939804 86940291 -68689829 - ORR1D2-int LTR MaLR -374 996 464 8 1248 1060 86 136 0 chr4 86940292 86940454 -68689666 - ORR1A2 LTR MaLR 0 327 144 8 1248 447 298 162 60 chr4 86940472 86940786 -68689334 - MTEa LTR MaLR -33 346 1 8 1248 460 307 175 79 chr4 86941338 86942048 -68688072 - Charlie24 DNA MER1_type -160 2290 1513 8 1248 409 75 0 0 chr4 86942083 86942136 -68687984 - ORR1A3 LTR MaLR -2 324 272 8 1248 22 0 0 0 chr4 86942141 86942163 -68687957 + AT_rich Low_complexity Low_complexity 1 22 0 8 1248 4882 70 2 2 chr4 86942183 86942809 -68687311 - L1_Mus2 LINE L1 0 6566 5941 8 1248 2880 88 7 5 chr4 86942809 86943242 -68686878 + L1_Mm LINE L1 4989 5422 -461 8 1248 313 139 0 27 chr4 86943223 86943297 -68686823 - Lx3A LINE L1 -14 6967 6896 8 1248 1957 114 19 9 chr4 86943313 86943632 -68686488 - Lx3A LINE L1 -874 6107 5786 8 1248 1754 139 18 0 chr4 86943632 86943906 -68686214 - ORR1A3 LTR MaLR -47 279 1 8 1248 1886 296 95 30 chr4 86943926 86944790 -68685330 - Charlie24 DNA MER1_type -1018 1432 513 8 1248 380 302 29 7 chr4 86944813 86944953 -68685167 - Charlie24 DNA MER1_type -2026 424 282 8 1248 189 237 0 0 chr4 86945135 86945194 -68684926 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1248 257 318 30 0 chr4 86946865 86946931 -68683189 - ID4_ SINE ID -11 72 5 8 1248 469 259 88 15 chr4 86948003 86948140 -68681980 + MTEa LTR MaLR 1 147 -232 8 1248 532 351 59 13 chr4 86948069 86948375 -68681745 + MT2A LTR ERVL 75 394 -139 8 1248 484 291 187 32 chr4 86948681 86948832 -68681288 + MTE2b LTR MaLR 2 163 -216 8 1248 4702 63 16 10 chr4 86948832 86949408 -68680712 + L1Md_F2 LINE L1 5991 6569 -13 8 1248 484 291 187 32 chr4 86949408 86949572 -68680548 + MTE2b LTR MaLR 164 366 -13 8 1248 1405 255 61 0 chr4 86949581 86949958 -68680162 + MTE2b-int LTR MaLR 1 400 -1180 8 1248 554 262 21 18 chr4 86949983 86950183 -68679937 + MTE2b LTR MaLR 247 377 -2 8 1248 943 294 74 2 chr4 86950195 86950713 -68679407 + ERVL-int LTR ERVL 142 756 -5005 8 1248 916 127 78 0 chr4 86950768 86950934 -68679186 - Lx LINE L1 0 6654 6476 8 1248 12621 80 4 4 chr4 86950934 86952695 -68677425 + MusHAL1 LINE L1 378 2138 -574 8 1248 31480 29 2 8 chr4 86952694 86957214 -68672906 + L1Md_A LINE L1 391 4876 -1007 8 1248 22990 35 4 25 chr4 86957220 86960531 -68669589 - L1Md_A LINE L1 0 6582 3294 8 1248 2353 4 0 0 chr4 86960531 86960777 -68669343 - L1Md_A LINE L1 -2 6580 6335 8 1248 18157 163 3 164 chr4 86960777 86962738 -68667382 - L1Md_A LINE L1 -2587 3299 2048 8 1248 6466 15 0 1 chr4 86962739 86963466 -68666654 + L1Md_A LINE L1 4861 5586 -297 8 1248 8818 35 5 0 chr4 86963466 86964457 -68665663 + L1Md_A LINE L1 5587 6582 0 8 1248 3086 122 35 0 chr4 86964458 86964633 -68665487 + L1_Mur1 LINE L1 3297 3487 -2399 8 1248 318 26 0 0 chr4 86964633 86964672 -68665448 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1248 3086 122 35 0 chr4 86964672 86965005 -68665115 + L1_Mur1 LINE L1 3488 3822 -2064 8 1248 284 337 105 12 chr4 86965028 86965199 -68664921 + ERVL-int LTR ERVL 814 1000 -4761 8 1248 399 250 9 9 chr4 86965220 86965329 -68664791 + ERVL-int LTR ERVL 1008 1116 -4598 8 1248 4883 99 40 0 chr4 86965894 86966561 -68663559 - Lx3_Mus LINE L1 -6 7003 6310 8 1248 4590 93 44 5 chr4 86966572 86967231 -68662889 + Lx3_Mus LINE L1 5587 6271 -738 8 1248 1084 231 21 8 chr4 86967232 86967472 -68662648 + ERVL-int LTR ERVL 1180 1422 -4339 8 1248 7530 268 55 10 chr4 86967490 86969510 -68660610 + ERVL-int LTR ERVL 1482 3591 -2166 8 1248 3690 267 72 28 chr4 86969521 86970793 -68659327 + ERVL-int LTR ERVL 4411 5761 0 8 1248 433 239 112 0 chr4 86970795 86970917 -68659203 + MTEa LTR MaLR 8 143 -236 8 1248 356 301 111 65 chr4 86970899 86971116 -68659004 + MT2A LTR ERVL 138 364 -169 8 1248 976 90 5 0 chr4 86972163 86972305 -68657815 + B1_Mus1 SINE Alu 3 150 0 8 1248 288 316 40 158 chr4 86972800 86972881 -68657239 - MLT2F LTR ERVL -124 539 475 8 1248 1395 224 216 75 chr4 86972881 86972925 -68657195 - MT2A LTR ERVL 0 533 489 8 1248 432 0 0 0 chr4 86972925 86972973 -68657147 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1248 1395 224 216 75 chr4 86972973 86973395 -68656725 - MT2A LTR ERVL -45 488 3 8 1248 288 316 40 158 chr4 86973395 86973432 -68656688 - MLT2F LTR ERVL -189 474 440 8 1248 1161 58 29 0 chr4 86973432 86973570 -68656550 - B1_Mus1 SINE Alu -5 143 2 8 1248 288 316 40 158 chr4 86973570 86973747 -68656373 - MLT2F LTR ERVL -224 439 278 8 1248 240 329 0 28 chr4 86974014 86974086 -68656034 + ID4 SINE ID 5 74 -9 8 1248 231 36 0 0 chr4 86974142 86974170 -68655950 + (ATG)n Simple_repeat Simple_repeat 2 29 0 8 1248 833 272 0 0 chr4 86974772 86974930 -68655190 - RSINE1 SINE B4 -6 159 2 8 1248 784 336 128 45 chr4 86975343 86976195 -68653925 + L2b LINE L2 2201 3123 -252 8 1248 183 359 64 0 chr4 86976393 86976471 -68653649 + L2b LINE L2 3291 3373 -2 8 1248 227 301 58 35 chr4 86976703 86976789 -68653331 - MIR SINE MIR -138 124 37 8 1248 504 369 44 29 chr4 86977695 86978010 -68652110 - MLT1J LTR MaLR -172 340 21 8 1248 199 376 12 12 chr4 86978019 86978105 -68652015 - MIRb SINE MIR -182 86 1 8 1248 292 333 31 56 chr4 86979781 86979943 -68650177 - MIRb SINE MIR -59 209 52 8 1248 225 244 118 35 chr4 86980007 86980092 -68650028 + MIR SINE MIR 98 189 -73 8 1248 1384 216 115 22 chr4 86980503 86980859 -68649261 + MTD LTR MaLR 1 389 -30 8 1248 402 207 0 0 chr4 86981120 86981284 -68648836 + CT-rich Low_complexity Low_complexity 1 164 0 8 1248 522 0 0 0 chr4 86981284 86981342 -68648778 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1248 1468 186 94 3 chr4 86981345 86981631 -68648489 + RMER15 LTR ERVL 5 316 -259 8 1248 733 203 65 0 chr4 86981628 86981766 -68648354 + RMER15 LTR ERVL 429 575 0 8 1248 626 189 208 57 chr4 86981867 86982152 -68647968 - ORR1C2 LTR MaLR -49 335 8 8 1248 236 242 32 0 chr4 86982186 86982248 -68647872 + RLTR19C LTR ERVK 34 97 -409 8 1248 5594 39 0 2 chr4 86983845 86984466 -68645654 - L1Md_F2 LINE L1 -9 6573 5954 8 1248 622 285 0 7 chr4 86984550 86984695 -68645425 + MTD LTR MaLR 43 186 -233 8 1248 591 200 17 9 chr4 86984690 86984806 -68645314 + MTD LTR MaLR 303 419 0 8 1248 234 333 24 0 chr4 86984819 86984903 -68645217 - MLT1A0 LTR MaLR -29 361 276 8 1248 355 240 93 79 chr4 86985001 86985141 -68644979 - MLT1A0 LTR MaLR -214 151 10 8 1248 908 123 260 12 chr4 86985233 86985406 -68644714 + B3 SINE B2 1 216 0 8 1248 17408 112 14 8 chr4 86985580 86988964 -68641156 + L1_Mus3 LINE L1 3221 6626 -12 8 1248 863 256 36 0 chr4 86989067 86989228 -68640892 - B3 SINE B2 -11 205 39 8 1248 270 0 0 0 chr4 86989228 86989258 -68640862 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 1248 863 256 36 0 chr4 86989258 86989291 -68640829 - B3 SINE B2 -178 38 5 8 1248 366 352 24 12 chr4 86989333 86989497 -68640623 + MER5A1 DNA MER1_type 1 166 0 8 1248 571 224 0 9 chr4 86989656 86989764 -68640356 + B1F2 SINE Alu 43 149 0 8 1248 507 107 0 0 chr4 86989764 86989848 -68640272 + (CAAAA)n Simple_repeat Simple_repeat 1 84 0 8 1248 1554 141 5 5 chr4 86989900 86990121 -68639999 + URR1B DNA MER1_type 5 225 0 8 1248 186 196 16 125 chr4 86990428 86990492 -68639628 + L2c LINE L2 3241 3297 -90 8 1248 452 231 67 42 chr4 86991465 86991640 -68638480 + MLT1A1 LTR MaLR 269 408 0 8 1248 290 385 63 23 chr4 86991961 86992264 -68637856 - L3 LINE CR1 -841 3648 3334 8 1248 6062 185 29 8 chr4 86992353 86993480 -68636640 - Lx9 LINE L1 -7 7637 6487 8 1248 628 287 85 54 chr4 86993794 86994052 -68636068 + RMER15 LTR ERVL 296 561 -14 8 1248 333 0 0 0 chr4 86994654 86994691 -68635429 + (TC)n Simple_repeat Simple_repeat 2 38 0 8 1248 189 0 0 0 chr4 86994691 86994711 -68635409 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1248 369 24 90 45 chr4 86994712 86994801 -68635319 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 8 1248 805 168 13 0 chr4 86995291 86995446 -68634674 - Lx2 LINE L1 0 6997 6841 8 1248 251 85 21 0 chr4 86995548 86995595 -68634525 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1248 1665 270 148 72 chr4 86996125 86996345 -68633775 - Charlie12 DNA MER1_type -3 2870 2620 8 1248 455 328 38 0 chr4 86996345 86996528 -68633592 + B3A SINE B2 2 191 -7 8 1248 1665 270 148 72 chr4 86996528 86996686 -68633434 - Charlie12 DNA MER1_type -254 2619 2441 8 1248 360 0 0 0 chr4 86996686 86996726 -68633394 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1248 1665 270 148 72 chr4 86996726 86996740 -68633380 - Charlie12 DNA MER1_type -433 2440 2435 8 1248 1708 141 61 11 chr4 86996740 86997020 -68633100 - Lx4A LINE L1 -2 7056 6763 8 1248 1665 270 148 72 chr4 86997020 86997606 -68632514 - Charlie12 DNA MER1_type -439 2434 1818 8 1248 338 347 0 0 chr4 86997626 86997724 -68632396 - Charlie12 DNA MER1_type -2371 502 405 8 1248 350 206 54 11 chr4 86998011 86998035 -68632085 - L1MB7 LINE L1 -277 5907 5884 8 1248 1155 163 44 44 chr4 86998035 86998260 -68631860 - URR1A DNA MER1_type 0 226 2 8 1248 350 206 54 11 chr4 86998260 86998328 -68631792 - L1MB7 LINE L1 -301 5883 5811 8 1248 624 226 0 0 chr4 86998339 86998454 -68631666 + PB1D9 SINE Alu 1 115 -5 8 1248 210 37 0 0 chr4 86998456 86998483 -68631637 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 8 1248 289 169 10 162 chr4 86998599 86998698 -68631422 - Lx4B LINE L1 -75 6983 6900 8 1248 477 0 0 0 chr4 86998962 86999015 -68631105 + (TTA)n Simple_repeat Simple_repeat 1 53 0 8 1248 567 297 130 28 chr4 86999021 86999236 -68630884 - B4 SINE B4 -28 264 28 8 1248 1370 136 94 4 chr4 86999446 86999690 -68630430 - ORR1B1 LTR MaLR -128 266 1 8 1248 436 243 23 41 chr4 86999717 86999869 -68630251 - L1MB7 LINE L1 -1301 4839 4693 8 1248 209 189 0 0 chr4 87000046 87000083 -68630037 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 1248 307 299 94 21 chr4 87000759 87000950 -68629170 - L1M5 LINE L1 -1443 4703 4499 2 1248 4119 149 6 3 chr4 87003296 87004002 -68626118 - L1_Mur2 LINE L1 -1724 4153 3446 3 1248 7817 91 18 6 chr4 87004001 87005274 -68624846 + Lx LINE L1 5366 6654 0 4 1248 314 257 65 26 chr4 87005967 87006149 -68623971 + MIRb SINE MIR 48 241 -21 5 1248 846 149 22 0 chr4 87006504 87006638 -68623482 - B1_Mur3 SINE Alu -12 137 1 6 1248 549 256 27 124 chr4 87006715 87007142 -68622978 - L1MA4 LINE L1 -1607 6089 5706 7 1248 295 188 0 6 chr4 87008615 87008680 -68621440 - B2_Mm2 SINE B2 -107 109 47 8 1248 1133 148 11 0 chr4 87008692 87008868 -68621252 - B2_Mm1t SINE B2 -13 180 3 9 1248 342 273 108 15 chr4 87008891 87009021 -68621099 - ORSL DNA Tip100 -133 142 1 1 1248 6215 91 63 7 chr4 87009781 87010571 -68619549 + L1_Mus3 LINE L1 5684 6518 -120 1 1248 192 40 0 0 chr4 87010571 87010596 -68619524 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 1 1248 6215 91 63 7 chr4 87010596 87010863 -68619257 + L1_Mus3 LINE L1 6519 6638 0 1 1248 578 307 44 19 chr4 87010863 87011069 -68619051 + B4A SINE B4 82 292 0 1 1248 304 57 0 0 chr4 87011211 87011246 -68618874 - Lx2 LINE L1 -494 6503 6469 1 1248 843 181 0 26 chr4 87011303 87011456 -68618664 - B1_Mur3 SINE Alu 0 149 1 1 1248 180 0 0 0 chr4 87011478 87011498 -68618622 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 1248 653 176 0 0 chr4 87011514 87011622 -68618498 - B3 SINE B2 -86 130 23 1 1248 674 78 19 0 chr4 87011759 87011786 -68618334 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 1 1248 1359 62 0 0 chr4 87011786 87011964 -68618156 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 1 1248 674 78 19 0 chr4 87011964 87012039 -68618081 + (TTTCC)n Simple_repeat Simple_repeat 2 78 0 2 1248 570 54 0 0 chr4 87012039 87012113 -68618007 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 2 1248 306 230 27 13 chr4 87012120 87012195 -68617925 - B1F SINE Alu -34 115 40 2 1248 267 211 0 0 chr4 87016127 87016179 -68613941 + MIR SINE MIR 16 67 -195 2 1248 649 267 5 16 chr4 87016567 87016761 -68613359 - L1M2 LINE L1 -1174 4969 4778 2 1248 295 277 133 83 chr4 87016855 87017036 -68613084 - B4A SINE B4 -67 225 36 2 1248 339 25 0 0 chr4 87017079 87017119 -68613001 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1248 440 309 50 7 chr4 87017167 87017307 -68612813 - RSINE1 SINE B4 -13 152 7 2 1248 294 188 0 0 chr4 87017308 87017377 -68612743 - L1M2 LINE L1 -1404 4739 4671 2 1248 365 167 0 13 chr4 87017452 87017531 -68612589 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1248 210 71 0 0 chr4 87017830 87017858 -68612262 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1248 269 254 120 53 chr4 87018387 87018520 -68611600 + RMER30 DNA MER1_type 48 189 -13 3 1248 234 328 16 0 chr4 87018647 87018711 -68611409 + (CAG)n Simple_repeat Simple_repeat 1 65 0 3 1248 191 333 0 87 chr4 87018863 87018955 -68611165 + MER5A DNA MER1_type 95 178 -11 3 1248 429 20 0 0 chr4 87019171 87019221 -68610899 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1248 309 364 51 11 chr4 87020939 87021114 -68609006 - L4 LINE RTE -166 1863 1682 3 1248 648 222 7 0 chr4 87021912 87022047 -68608073 - B1_Mur1 SINE Alu -5 144 9 3 1248 212 59 0 29 chr4 87022621 87022656 -68607464 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 3 1248 2417 178 150 35 chr4 87022755 87023348 -68606772 - Lx9 LINE L1 -7 7637 6977 3 1248 4887 161 30 18 chr4 87023379 87024276 -68605844 + RMER13B LTR ERVK 1 908 0 3 1248 281 321 22 8 chr4 87026750 87026909 -68603211 - MIR SINE MIR -35 227 67 3 1248 294 29 0 0 chr4 87026948 87026983 -68603137 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 4 1248 1294 161 5 0 chr4 87027379 87027596 -68602524 + URR1B DNA MER1_type 8 225 0 4 1248 588 29 0 0 chr4 87027669 87027739 -68602381 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1248 725 254 13 30 chr4 87027838 87028069 -68602051 + MamRep4096 DNA hAT? 66 292 -134 4 1248 33 0 0 0 chr4 87030899 87030932 -68599188 + AT_rich Low_complexity Low_complexity 1 33 0 4 1248 228 67 0 0 chr4 87030950 87030980 -68599140 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 4 1248 426 114 0 0 chr4 87030982 87031052 -68599068 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1248 531 45 0 0 chr4 87031064 87031130 -68598990 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 19 789 146 0 0 chr4 87031759 87031896 -68598224 + (GA)n Simple_repeat Simple_repeat 1 137 0 4 1249 403 212 169 0 chr4 87033313 87033431 -68596689 + MER5A1 DNA MER1_type 14 151 -15 4 1249 188 348 117 17 chr4 87033787 87033907 -68596213 - L2a LINE L2 0 3426 3295 5 1249 262 252 130 58 chr4 87034523 87034746 -68595374 - L1M4 LINE L1 -863 5283 5045 5 1249 249 33 0 0 chr4 87034750 87034780 -68595340 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1249 785 231 74 68 chr4 87034797 87034903 -68595217 - ORR1D1 LTR MaLR -143 231 101 5 1249 342 0 0 0 chr4 87034903 87034941 -68595179 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1249 785 213 71 62 chr4 87034941 87035084 -68595036 - ORR1D1 LTR MaLR -211 163 5 5 1249 339 282 128 25 chr4 87035132 87035414 -68594706 - L1M4 LINE L1 -1426 4714 4414 5 1249 243 291 130 25 chr4 87035492 87035654 -68594466 - MER119 DNA MER1_type 0 583 405 5 1249 711 273 70 10 chr4 87036137 87036282 -68593838 + B3 SINE B2 2 152 -64 5 1249 1863 163 76 12 chr4 87036282 87036624 -68593496 - ORR1B2 LTR MaLR -3 364 1 5 1249 711 273 70 10 chr4 87036624 87036678 -68593442 + B3 SINE B2 153 213 -3 5 1249 995 228 8 91 chr4 87037131 87037396 -68592724 + ORR1E LTR MaLR 3 245 -114 5 1249 773 286 113 36 chr4 87037907 87038244 -68591876 + MLT1A0 LTR MaLR 1 363 -2 5 1249 764 287 87 30 chr4 87038429 87038659 -68591461 + B4 SINE B4 48 290 -2 6 1249 396 40 0 0 chr4 87038672 87038722 -68591398 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1249 415 244 16 87 chr4 87038745 87038871 -68591249 + B1_Mur2 SINE Alu 32 148 -1 6 1249 342 0 0 0 chr4 87039770 87039808 -68590312 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1249 392 288 52 29 chr4 87039808 87039900 -68590220 - B3A SINE B2 -57 141 50 6 1249 1215 221 175 126 chr4 87039900 87040408 -68589712 + MT2A LTR ERVL 1 533 0 6 1249 392 288 52 29 chr4 87040408 87040451 -68589669 - B3A SINE B2 -149 49 3 6 1249 212 274 0 0 chr4 87041773 87041824 -68588296 + L2c LINE L2 3334 3384 -3 6 1249 451 290 93 0 chr4 87042011 87042173 -68587947 + B3A SINE B2 1 177 -21 6 1249 253 303 0 13 chr4 87042529 87042606 -68587514 + MIRb SINE MIR 191 266 -2 6 1249 365 284 109 29 chr4 87042936 87043134 -68586986 + MLT1F1 LTR MaLR 10 223 -346 6 1249 189 147 0 0 chr4 87043172 87043206 -68586914 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1249 391 294 139 7 chr4 87043627 87043771 -68586349 - RSINE1 SINE B4 0 165 3 7 1249 406 339 55 83 chr4 87043936 87044299 -68585821 - ORR1E LTR MaLR -1 358 6 7 1249 5449 114 27 2 chr4 87045144 87046249 -68583871 - L1_Mus4 LINE L1 -499 6137 5007 7 1249 2924 97 93 17 chr4 87046249 87046711 -68583409 + Lx LINE L1 6158 6654 0 7 1249 24 0 0 0 chr4 87048910 87048934 -68581186 + AT_rich Low_complexity Low_complexity 1 24 0 7 1249 888 19 0 0 chr4 87049194 87049300 -68580820 + (CA)n Simple_repeat Simple_repeat 2 107 0 7 1249 260 246 18 0 chr4 87049658 87049715 -68580405 + C-rich Low_complexity Low_complexity 6 63 0 7 1249 239 336 100 62 chr4 87051045 87051264 -68578856 + MLT1H2 LTR MaLR 73 331 -218 7 1249 296 263 29 39 chr4 87051264 87051367 -68578753 - MTEb LTR MaLR 0 379 278 7 1249 1438 54 38 0 chr4 87052557 87052742 -68577378 + B2_Mm1a SINE B2 2 193 0 8 1249 215 31 31 0 chr4 87053003 87053035 -68577085 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1249 414 0 0 0 chr4 87053093 87053139 -68576981 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1249 316 290 153 68 chr4 87053401 87053623 -68576497 + MER5C DNA MER1_type 2 242 -71 8 1249 806 186 14 14 chr4 87053668 87053815 -68576305 + B1F2 SINE Alu 2 148 -1 8 1249 645 25 0 0 chr4 87053842 87053921 -68576199 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 8 1249 390 139 0 0 chr4 87055951 87056023 -68574097 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1249 291 264 7 160 chr4 87056034 87056178 -68573942 - MLT1L LTR MaLR -343 267 146 8 1249 36 40 0 0 chr4 87056455 87056505 -68573615 + AT_rich Low_complexity Low_complexity 1 50 0 8 1249 322 324 96 7 chr4 87057098 87057244 -68572876 + RMER15 LTR ERVL 377 535 -40 8 1249 180 310 126 0 chr4 87057380 87057467 -68572653 - MIR SINE MIR -158 104 7 9 1249 277 203 217 48 chr4 87057586 87057669 -68572451 - RSINE1 SINE B4 -43 122 26 9 1249 7822 12 5 0 chr4 87058751 87059569 -68570551 - RLTR13B2 LTR ERVK 0 822 1 9 1249 11427 51 4 0 chr4 87059753 87061147 -68568973 + L1Md_F2 LINE L1 4186 5584 -299 9 1249 8715 35 8 0 chr4 87061150 87062123 -68567997 + L1Md_F2 LINE L1 5588 6568 -14 9 1249 7810 63 8 5 chr4 87062172 87063322 -68566798 - L1Md_F2 LINE L1 0 6582 5430 9 1249 323 362 123 17 chr4 87063424 87063716 -68566404 + L1MC4 LINE L1 7203 7525 -517 9 1249 308 339 3 25 chr4 87064145 87064294 -68565826 - L2b LINE L2 -222 3165 3018 9 1249 597 105 0 0 chr4 87064334 87064429 -68565691 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1249 499 258 103 9 chr4 87064446 87064669 -68565451 + L1MA6 LINE L1 5821 6064 -236 9 1249 434 326 95 44 chr4 87064670 87064756 -68565364 + L1ME1 LINE L1 4401 4505 -1641 9 1249 459 0 0 0 chr4 87064756 87064807 -68565313 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1249 434 326 95 44 chr4 87064807 87065269 -68564851 + L1ME1 LINE L1 4506 4976 -1170 9 1249 1048 296 25 51 chr4 87065441 87065852 -68564268 + L1ME1 LINE L1 5467 5869 -310 9 1249 635 267 29 88 chr4 87065852 87066057 -68564063 + B3A SINE B2 1 193 -5 1 1249 1048 296 25 51 chr4 87066057 87066196 -68563924 + L1ME1 LINE L1 5870 6003 -176 9 1249 602 277 67 42 chr4 87066565 87067089 -68563031 + L1M4 LINE L1 4976 5507 -673 1 1249 426 318 87 7 chr4 87067421 87067570 -68562550 + RSINE1 SINE B4 4 164 -1 1 1249 1321 155 27 5 chr4 87069332 87069552 -68560568 + URR1B DNA MER1_type 1 225 0 1 1249 459 0 0 0 chr4 87069784 87069835 -68560285 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1249 214 261 33 43 chr4 87070588 87070680 -68559440 - MIRb SINE MIR -69 199 109 1 1249 941 291 20 57 chr4 87071119 87071367 -68558753 + B4 SINE B4 40 278 -14 1 1249 4843 98 32 13 chr4 87071576 87072266 -68557854 + Lx LINE L1 5952 6654 0 1 1249 33 66 0 0 chr4 87073338 87073399 -68556721 + AT_rich Low_complexity Low_complexity 1 61 0 1 1249 210 302 94 0 chr4 87073913 87074019 -68556101 - MIR3 SINE MIR -78 130 15 1 1249 21 57 0 0 chr4 87074781 87074816 -68555304 + AT_rich Low_complexity Low_complexity 1 35 0 1 1249 1258 42 0 7 chr4 87075070 87075214 -68554906 - B1_Mus2 SINE Alu 0 147 5 1 1249 875 85 8 0 chr4 87075217 87075347 -68554773 + (TTTTC)n Simple_repeat Simple_repeat 2 132 0 1 1249 775 67 0 19 chr4 87075351 87075458 -68554662 - B1_Mm SINE Alu 0 147 43 1 1249 277 145 183 28 chr4 87075396 87075467 -68554653 - RLTR25B LTR ERVK -519 509 428 1 1249 659 310 6 0 chr4 87075542 87075702 -68554418 + B3 SINE B2 8 168 -48 1 1249 246 105 0 0 chr4 87075702 87075740 -68554380 + (CATG)n Simple_repeat Simple_repeat 1 38 0 1 1249 659 310 6 0 chr4 87075740 87075753 -68554367 + B3 SINE B2 169 181 -35 1 1249 201 368 45 11 chr4 87076143 87076231 -68553889 - MIRm SINE MIR -116 160 70 1 1249 367 236 104 0 chr4 87076245 87076351 -68553769 - ORR1D1 LTR MaLR 0 374 258 1 1249 22 56 0 0 chr4 87076809 87076845 -68553275 + AT_rich Low_complexity Low_complexity 1 36 0 1 1249 746 230 0 13 chr4 87077176 87077326 -68552794 + B3 SINE B2 3 150 -66 1 1249 531 202 0 0 chr4 87077350 87077464 -68552656 + (TA)n Simple_repeat Simple_repeat 1 114 0 1 1249 28 29 0 0 chr4 87077467 87077502 -68552618 + AT_rich Low_complexity Low_complexity 1 35 0 1 1249 180 111 0 0 chr4 87077588 87077615 -68552505 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1249 906 277 106 12 chr4 87077632 87077888 -68552232 - B4A SINE B4 -4 288 9 1 1249 522 46 0 0 chr4 87078184 87078249 -68551871 + (CGG)n Simple_repeat Simple_repeat 3 67 0 1 1249 190 277 60 30 chr4 87078734 87078801 -68551319 - MIR SINE MIR -192 70 2 1 1249 282 264 14 14 chr4 87079591 87079664 -68550456 + MIRb SINE MIR 121 193 -75 1 1249 202 281 46 58 chr4 87080758 87080845 -68549275 - MIRc SINE MIR -128 140 55 1 1249 565 298 7 14 chr4 87081015 87081158 -68548962 - MER58A DNA MER1_type -22 202 61 1 1249 528 59 0 0 chr4 87082383 87082451 -68547669 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1249 2979 12 0 0 chr4 87082956 87083286 -68546834 + L1Md_T LINE L1 5257 5586 -297 1 1249 9077 28 1 0 chr4 87083286 87084281 -68545839 + L1Md_T LINE L1 5587 6582 0 1 1249 23 33 0 0 chr4 87084281 87084311 -68545809 + AT_rich Low_complexity Low_complexity 1 30 0 1 1249 200 292 0 0 chr4 87084454 87084519 -68545601 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1249 457 182 277 97 chr4 87085437 87085632 -68544488 - MER2 DNA MER2_type 0 345 116 1 1249 384 215 10 70 chr4 87086234 87086334 -68543786 - B4A SINE B4 -5 287 194 1 1249 432 0 0 0 chr4 87086987 87087035 -68543085 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1249 204 125 0 0 chr4 87087056 87087088 -68543032 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 1 1249 424 234 79 26 chr4 87087507 87087621 -68542499 + PB1D9 SINE Alu 1 120 0 1 1249 1128 67 0 0 chr4 87087641 87087791 -68542329 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 1 1249 216 182 0 0 chr4 87087885 87087929 -68542191 + CT-rich Low_complexity Low_complexity 1 44 0 1 1249 688 232 21 7 chr4 87088015 87088158 -68541962 + B1_Mur2 SINE Alu 5 149 0 1 1249 569 267 7 40 chr4 87088889 87089041 -68541079 + B3A SINE B2 6 152 -46 1 1249 1262 174 26 31 chr4 87090426 87090652 -68539468 - URR1B DNA MER1_type 0 225 1 1 1249 273 119 0 0 chr4 87091389 87091431 -68538689 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 1249 486 0 0 0 chr4 87091431 87091485 -68538635 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1249 1767 254 24 38 chr4 87091489 87091992 -68538128 - Lx9 LINE L1 -192 7452 6957 1 1249 184 319 29 14 chr4 87092015 87092085 -68538035 - MIRb SINE MIR -79 189 119 1 1249 184 148 0 0 chr4 87092503 87092530 -68537590 - L2a LINE L2 -33 3393 3367 1 1249 243 61 0 0 chr4 87094577 87094610 -68535510 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1249 437 233 95 0 chr4 87094667 87094783 -68535337 - MER112 DNA MER1_type -127 134 8 1 1249 278 278 153 10 chr4 87094786 87094884 -68535236 + L2c LINE L2 3276 3387 0 1 1249 646 285 41 52 chr4 87095076 87095346 -68534774 + L1M2 LINE L1 4778 5044 -1099 1 1249 183 167 0 0 chr4 87095889 87095931 -68534189 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1249 1330 226 95 38 chr4 87095946 87096263 -68533857 + MTD LTR MaLR 18 352 -67 1 1249 418 266 23 31 chr4 87097947 87098056 -68532064 + B3 SINE B2 89 200 -16 1 1249 243 0 0 0 chr4 87098056 87098083 -68532037 + (CAAAT)n Simple_repeat Simple_repeat 4 30 0 1 1249 418 266 23 31 chr4 87098083 87098101 -68532019 + B3 SINE B2 201 215 -1 1 1249 186 43 0 0 chr4 87098423 87098446 -68531674 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1249 902 257 22 27 chr4 87098495 87098719 -68531401 + ID_B1 SINE B4 2 224 0 1 1249 3734 18 2 0 chr4 87098764 87099159 -68530961 - MTA_Mm LTR MaLR 0 396 1 1 1249 708 219 14 42 chr4 87099216 87099359 -68530761 - B1_Mur1 SINE Alu -8 141 3 1 1249 233 210 0 16 chr4 87099399 87099462 -68530658 + GA-rich Low_complexity Low_complexity 4 65 0 1 1249 198 258 314 36 chr4 87100858 87100995 -68529125 + MIRb SINE MIR 6 180 -88 1 1249 236 255 68 90 chr4 87101572 87101749 -68528371 - Lx7 LINE L1 -15 7681 7509 1 1249 2242 261 62 11 chr4 87101752 87101769 -68528351 - Lx7 LINE L1 -363 7333 7317 1 1249 207 0 0 0 chr4 87101769 87101792 -68528328 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1249 2242 261 62 11 chr4 87101792 87102386 -68527734 - Lx7 LINE L1 -380 7316 6691 1 1249 207 309 58 23 chr4 87102935 87103021 -68527099 + MIRb SINE MIR 180 268 0 1 1249 207 0 0 0 chr4 87103248 87103271 -68526849 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1249 329 239 0 14 chr4 87103653 87103725 -68526395 + MER20 DNA MER1_type 4 74 -145 1 1249 180 298 21 106 chr4 87104127 87104221 -68525899 + MIRb SINE MIR 58 143 -125 1 1249 333 0 0 0 chr4 87107877 87107914 -68522206 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1249 265 185 36 36 chr4 87108829 87108885 -68521235 + L2a LINE L2 3312 3367 -8 1 1249 264 85 0 48 chr4 87108921 87108969 -68521151 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1249 447 19 0 0 chr4 87108969 87109021 -68521099 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1249 264 85 0 48 chr4 87109021 87109034 -68521086 + (TA)n Simple_repeat Simple_repeat 1 13 0 1 1249 210 335 29 69 chr4 87109215 87109388 -68520732 - MIR SINE MIR -26 236 71 1 1249 3599 172 20 18 chr4 87109421 87110072 -68520048 + Lx9 LINE L1 6865 7516 -128 1 1249 555 152 0 0 chr4 87110072 87110184 -68519936 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1249 356 248 64 0 chr4 87110184 87110341 -68519779 + Lx9 LINE L1 7455 7621 -23 1 1249 270 250 15 0 chr4 87110654 87110722 -68519398 + GA-rich Low_complexity Low_complexity 4 72 0 1 1249 238 152 0 33 chr4 87111215 87111276 -68518844 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 1249 204 111 0 0 chr4 87111276 87111312 -68518808 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1249 506 300 51 51 chr4 87111320 87111478 -68518642 - RSINE1 SINE B4 -6 159 2 1 1249 258 32 0 0 chr4 87111585 87111616 -68518504 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1249 370 247 13 0 chr4 87111647 87111724 -68518396 - PB1D10 SINE Alu -18 99 22 1 1249 214 320 82 29 chr4 87112005 87112122 -68517998 + MIRb SINE MIR 4 132 -136 1 1249 508 262 120 116 chr4 87112211 87112470 -68517650 - MLT1A0 LTR MaLR -41 324 65 1 1249 222 253 71 12 chr4 87112728 87112812 -68517308 - MIRb SINE MIR -13 255 167 1 1249 268 254 0 17 chr4 87112825 87112885 -68517235 + L2a LINE L2 3358 3416 -10 1 1249 303 28 0 0 chr4 87113942 87113978 -68516142 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1249 186 143 0 0 chr4 87114001 87114036 -68516084 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1249 236 374 85 52 chr4 87114196 87114467 -68515653 - LTR33A_ LTR ERVL -216 315 36 1 1249 468 0 0 0 chr4 87114497 87114549 -68515571 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1249 270 0 0 0 chr4 87114841 87114871 -68515249 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1249 290 45 23 0 chr4 87114948 87114992 -68515128 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 1 1249 1225 75 0 0 chr4 87114992 87115138 -68514982 - B1_Mus2 SINE Alu 0 147 2 1 1249 791 178 0 36 chr4 87115413 87115553 -68514567 + B1_Mus2 SINE Alu 3 137 -10 1 1249 935 176 43 48 chr4 87116841 87117050 -68513070 + RMER1C Other Other 1131 1338 -4 1 1249 326 235 146 67 chr4 87117430 87117594 -68512526 - MER121 Unknown Unknown -76 336 160 1 1249 383 262 12 0 chr4 87117728 87117808 -68512312 - ID4 SINE ID -2 81 1 1 1249 413 281 7 97 chr4 87118266 87118420 -68511700 + MLT1A0 LTR MaLR 105 244 -121 1 1249 1185 75 0 0 chr4 87120098 87120236 -68509884 + B1_Mm SINE Alu 1 138 -9 1 1249 186 43 0 0 chr4 87120236 87120259 -68509861 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1249 315 130 0 0 chr4 87120301 87120355 -68509765 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1249 825 212 14 7 chr4 87120357 87120504 -68509616 - B1_Mur2 SINE Alu -1 148 1 2 1249 495 285 187 25 chr4 87120925 87121166 -68508954 + B4A SINE B4 1 280 -12 2 1249 407 354 47 17 chr4 87121278 87121514 -68508606 - MIR SINE MIR 0 262 20 2 1249 264 128 18 0 chr4 87121524 87121578 -68508542 - B1_Mur3 SINE Alu -1 146 89 2 1249 221 67 0 0 chr4 87121575 87121605 -68508515 - B3A SINE B2 -168 30 1 2 1249 204 40 0 0 chr4 87121730 87121755 -68508365 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1249 258 302 0 0 chr4 87121936 87121999 -68508121 + ID4_ SINE ID 2 64 -19 2 1249 297 0 0 0 chr4 87122007 87122040 -68508080 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1249 21 0 0 0 chr4 87122200 87122221 -68507899 + AT_rich Low_complexity Low_complexity 1 21 0 2 1249 281 245 104 38 chr4 87123002 87123108 -68507012 - MIRb SINE MIR -110 158 46 2 1249 1136 78 35 0 chr4 87123453 87123595 -68506525 + B1_Mm SINE Alu 1 147 0 2 1249 186 43 0 0 chr4 87123597 87123620 -68506500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1249 23 0 0 0 chr4 87124076 87124099 -68506021 + AT_rich Low_complexity Low_complexity 1 23 0 2 1249 991 169 14 0 chr4 87124099 87124247 -68505873 - B1_Mur4 SINE Alu 0 150 1 2 1249 569 278 35 7 chr4 87124330 87124475 -68505645 - RSINE1 SINE B4 -14 151 3 2 1249 312 307 40 0 chr4 87124626 87124727 -68505393 + MLT1D LTR MaLR 3 107 -398 2 1249 259 123 105 0 chr4 87124796 87124853 -68505267 + Lx8 LINE L1 7409 7471 -2 2 1249 274 262 0 0 chr4 87124877 87124938 -68505182 + MLT1D LTR MaLR 120 180 -447 2 1249 417 273 122 10 chr4 87125002 87125198 -68504922 + L1MB7 LINE L1 2672 2889 -3257 2 1249 744 115 0 0 chr4 87125229 87125342 -68504778 + (GGA)n Simple_repeat Simple_repeat 3 115 0 2 1249 1476 153 400 31 chr4 87125360 87125745 -68504375 - RLTR11A2 LTR ERVK 0 527 1 2 1249 760 255 129 42 chr4 87125865 87126286 -68503834 + L1MB7 LINE L1 3178 3644 -2502 2 1249 441 0 0 0 chr4 87126310 87126359 -68503761 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1249 498 165 35 17 chr4 87126407 87126580 -68503540 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1249 277 198 34 8 chr4 87126641 87126758 -68503362 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1249 540 194 28 8 chr4 87126792 87127045 -68503075 + (TG)n Simple_repeat Simple_repeat 1 258 0 2 1249 420 370 147 8 chr4 87127090 87127335 -68502785 - B4A SINE B4 -13 279 1 2 1249 324 316 41 69 chr4 87127366 87127611 -68502509 + L1MB7 LINE L1 3767 4004 -2142 2 1249 1419 232 105 1 chr4 87127614 87127990 -68502130 - MTD LTR MaLR -14 405 1 2 1249 257 314 12 74 chr4 87128198 87128456 -68501664 + L1MB7 LINE L1 4287 4528 -1618 2 1249 510 254 117 6 chr4 87128473 87128720 -68501400 + L1MB7 LINE L1 4619 4913 -1233 2 1249 358 203 36 48 chr4 87128954 87129037 -68501083 + PB1D10 SINE Alu 14 95 -22 2 1249 242 297 14 0 chr4 87129039 87129113 -68501007 + GA-rich Low_complexity Low_complexity 4 78 0 2 1249 741 187 14 14 chr4 87129268 87129409 -68500711 + B1_Mur3 SINE Alu 9 149 0 2 1249 3083 144 228 22 chr4 87129600 87129983 -68500137 - RMER6A LTR ERVK 0 756 345 2 1249 611 13 13 0 chr4 87129983 87130059 -68500061 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1249 3083 144 228 22 chr4 87130059 87130302 -68499818 - RMER6A LTR ERVK -412 344 3 2 1249 325 273 223 29 chr4 87130321 87130443 -68499677 + L1MB7 LINE L1 5654 5824 -355 2 1249 234 0 0 0 chr4 87130443 87130469 -68499651 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1249 343 273 223 29 chr4 87130469 87130731 -68499389 + L1MB7 LINE L1 5825 6112 -67 2 1249 224 69 0 94 chr4 87131719 87131783 -68498337 + A-rich Low_complexity Low_complexity 3 60 0 2 1249 189 0 0 0 chr4 87131942 87131963 -68498157 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 2 1249 374 299 153 36 chr4 87134404 87134823 -68495297 + L1MC4 LINE L1 7430 7897 -145 2 1249 707 62 10 0 chr4 87134826 87134923 -68495197 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1249 475 74 25 0 chr4 87134985 87135066 -68495054 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1249 329 0 24 0 chr4 87135066 87135107 -68495013 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1249 2558 230 47 27 chr4 87135192 87135368 -68494752 - Lx7 LINE L1 -319 7377 7313 2 1249 243 0 0 0 chr4 87135368 87135395 -68494725 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1249 2558 196 57 14 chr4 87135395 87135834 -68494286 - Lx7 LINE L1 -384 7312 6849 2 1249 1104 149 101 20 chr4 87135872 87136070 -68494050 + RMER19B LTR ERVK 677 890 -12 2 1249 720 268 72 112 chr4 87137141 87137569 -68492551 + MER110A LTR ERV1 55 465 -3 2 1249 290 83 41 14 chr4 87138241 87138314 -68491806 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 2 1249 227 273 167 35 chr4 87138608 87138722 -68491398 + MLT1C LTR MaLR 1 129 -376 2 1249 293 331 127 16 chr4 87138699 87138825 -68491295 - MLT1E LTR MaLR -72 581 442 2 1249 532 303 62 32 chr4 87138796 87139059 -68491061 - MLT1E LTR MaLR -343 310 38 2 1249 193 197 30 0 chr4 87139930 87139996 -68490124 + GA-rich Low_complexity Low_complexity 1 68 0 2 1249 200 340 65 77 chr4 87140364 87140533 -68489587 - MIRb SINE MIR -76 192 26 2 1249 344 296 150 62 chr4 87141078 87141305 -68488815 + MLT1C LTR MaLR 221 467 0 2 1249 605 248 31 30 chr4 87141445 87141629 -68488491 + L1MA8 LINE L1 5757 5941 -223 2 1249 4209 55 61 0 chr4 87141711 87142200 -68487920 + MURVY-LTR LTR ERV1 1 519 0 2 1249 27 29 0 0 chr4 87142431 87142465 -68487655 + AT_rich Low_complexity Low_complexity 1 34 0 2 1249 901 224 73 54 chr4 87142473 87142733 -68487387 + B4A SINE B4 9 273 -19 2 1249 313 332 110 17 chr4 87144521 87144757 -68485363 + MLT1C LTR MaLR 204 461 -6 2 1249 1138 234 0 0 chr4 87145380 87145589 -68484531 + B3 SINE B2 1 209 -7 2 1249 367 41 0 0 chr4 87145609 87145658 -68484462 + L1Md_F3 LINE L1 6521 6569 -15 2 1249 180 111 0 0 chr4 87146858 87146885 -68483235 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1249 1081 236 35 0 chr4 87146954 87147157 -68482963 - B3 SINE B2 -6 210 1 2 1249 651 159 60 15 chr4 87147477 87147611 -68482509 + CT-rich Low_complexity Low_complexity 1 140 0 2 1249 534 70 0 0 chr4 87147611 87147682 -68482438 + (TTTTC)n Simple_repeat Simple_repeat 1 71 0 2 1249 239 89 35 35 chr4 87148697 87148755 -68481365 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1249 38954 10 1 8 chr4 87148891 87154314 -68475806 + L1Md_A LINE L1 209 5586 -297 2 1249 9449 13 0 0 chr4 87154314 87155310 -68474810 + L1Md_A LINE L1 5587 6582 0 2 1249 22 0 0 0 chr4 87155318 87155340 -68474780 + AT_rich Low_complexity Low_complexity 1 22 0 2 1249 432 55 0 0 chr4 87155382 87155437 -68474683 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 2 1249 704 144 0 14 chr4 87155718 87155859 -68474261 + GA-rich Low_complexity Low_complexity 3 141 0 2 1249 469 312 8 2 chr4 87156772 87156890 -68473230 - PB1D10 SINE Alu -12 105 1 2 1249 310 94 15 15 chr4 87157575 87157640 -68472480 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1249 672 173 0 0 chr4 87157640 87157819 -68472301 + GA-rich Low_complexity Low_complexity 2 180 0 2 1249 557 326 63 15 chr4 87157854 87158122 -68471998 - B4A SINE B4 -10 282 2 2 1249 34 72 0 0 chr4 87158995 87159064 -68471056 + AT_rich Low_complexity Low_complexity 1 69 0 2 1249 448 249 69 73 chr4 87159083 87159287 -68470833 - L1MA9 LINE L1 -69 6243 6041 2 1249 282 255 235 0 chr4 87159746 87159848 -68470272 + Charlie1a DNA MER1_type 6 131 -1324 2 1249 2270 173 43 8 chr4 87159875 87160271 -68469849 + RMER1B Other Other 646 1055 -11 2 1249 515 306 133 52 chr4 87160306 87160640 -68469480 + Charlie1a DNA MER1_type 616 965 -490 2 1249 6877 128 30 19 chr4 87160640 87161659 -68468461 + Lx4A LINE L1 6026 7056 -2 2 1249 515 306 133 52 chr4 87161659 87161955 -68468165 + Charlie1a DNA MER1_type 966 1297 -158 2 1249 362 162 0 93 chr4 87161945 87162020 -68468100 - B1_Mus2 SINE Alu -1 146 79 2 1249 2169 130 67 32 chr4 87162024 87162397 -68467723 - ORR1B1 LTR MaLR -8 386 1 2 1249 394 224 0 0 chr4 87162398 87162465 -68467655 - B1_Mus1 SINE Alu -65 83 17 2 1249 794 283 5 25 chr4 87162530 87162726 -68467394 - B3A SINE B2 -4 194 3 2 1250 626 161 137 0 chr4 87163404 87163528 -68466592 - URR1A DNA MER1_type -6 220 80 2 1250 795 21 0 0 chr4 87163854 87163949 -68466171 - L1Md_A LINE L1 -2 6580 6486 2 1250 200 354 12 0 chr4 87165699 87165781 -68464339 + L3b LINE CR1 195 277 -205 2 1250 477 0 0 0 chr4 87166630 87166683 -68463437 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1250 220 273 0 0 chr4 87166691 87166735 -68463385 - ID4 SINE ID -39 44 1 2 1250 938 9 9 0 chr4 87166742 87166853 -68463267 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 2 1250 28 29 0 0 chr4 87167987 87168022 -68462098 + AT_rich Low_complexity Low_complexity 1 35 0 2 1250 203 189 19 0 chr4 87168043 87168096 -68462024 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1250 842 287 60 36 chr4 87168096 87168429 -68461691 - Lx8 LINE L1 -20 7453 7113 2 1250 647 304 0 0 chr4 87168428 87168586 -68461534 + Lx8 LINE L1 6549 6706 -767 2 1250 828 296 35 18 chr4 87168594 87168876 -68461244 + Lx8 LINE L1 6828 7114 -359 2 1250 594 41 0 0 chr4 87169688 87169761 -68460359 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1250 9114 9 0 0 chr4 87169802 87171091 -68459029 - L1Md_T LINE L1 0 6582 5294 2 1250 2355 44 4 0 chr4 87171069 87171607 -68458513 + L1Md_Gf LINE L1 886 1522 -4364 2 1250 494 248 34 76 chr4 87171724 87171842 -68458278 - PB1D7 SINE Alu -7 113 1 2 1250 258 317 30 0 chr4 87172332 87172433 -68457687 + LTR33 LTR ERVL 403 506 -9 2 1250 347 244 226 0 chr4 87172464 87172579 -68457541 + MER5A1 DNA MER1_type 23 163 -3 2 1250 180 0 0 0 chr4 87172689 87172709 -68457411 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2 1250 324 0 0 0 chr4 87174119 87174155 -68455965 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1250 660 113 8 31 chr4 87174155 87174283 -68455837 + (TA)n Simple_repeat Simple_repeat 2 126 0 2 1250 1725 305 97 9 chr4 87174283 87175058 -68455062 - L1_Mur3 LINE L1 -131 5749 4907 2 1250 361 269 52 15 chr4 87175065 87175201 -68454919 + L1M2 LINE L1 4779 4919 -1224 2 1250 260 273 264 11 chr4 87175208 87175386 -68454734 + MIR SINE MIR 10 232 -30 2 1250 1630 224 78 14 chr4 87175759 87176103 -68454017 + ORR1D2 LTR MaLR 1 366 -4 2 1250 22 0 0 0 chr4 87176322 87176344 -68453776 + AT_rich Low_complexity Low_complexity 1 22 0 2 1250 265 284 17 114 chr4 87176611 87176786 -68453334 - L1M5 LINE L1 -293 5831 5674 2 1250 1002 284 133 22 chr4 87176787 87177389 -68452731 + L1MEc LINE L1 36 704 -5696 3 1250 432 0 0 0 chr4 87177750 87177798 -68452322 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1250 909 35 0 0 chr4 87178317 87178430 -68451690 + (GGGAGA)n Simple_repeat Simple_repeat 3 115 0 3 1250 1412 73 79 0 chr4 87179594 87179754 -68450366 + B2_Mm1t SINE B2 1 160 -33 3 1250 387 0 0 0 chr4 87179754 87179797 -68450323 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1250 1412 73 79 0 chr4 87179797 87179813 -68450307 + B2_Mm1t SINE B2 161 189 -4 3 1250 215 304 76 0 chr4 87180208 87180300 -68449820 - MIRb SINE MIR -10 258 160 3 1250 334 336 44 0 chr4 87181187 87181300 -68448820 + MLT1F2 LTR MaLR 38 155 -405 3 1250 960 181 50 0 chr4 87181527 87181709 -68448411 - MTC LTR MaLR 0 421 231 3 1250 817 287 93 55 chr4 87181714 87182057 -68448063 - ORR1E LTR MaLR -3 356 1 3 1250 1748 178 22 19 chr4 87182213 87182579 -68447541 - RMER1C Other Other -1 1341 975 3 1250 312 334 106 46 chr4 87182804 87183133 -68446987 - L1M5 LINE L1 -1310 4836 4488 3 1250 696 269 15 2 chr4 87183170 87183322 -68446798 + B3A SINE B2 1 155 -38 3 1250 372 22 0 0 chr4 87183322 87183367 -68446753 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1250 299 280 86 97 chr4 87183367 87183400 -68446720 + B2_Mm1a SINE B2 156 184 -9 3 1250 186 377 0 0 chr4 87183750 87183827 -68446293 - MER5B DNA MER1_type -3 175 99 3 1250 405 156 0 0 chr4 87184710 87184787 -68445333 + CT-rich Low_complexity Low_complexity 1 77 0 3 1250 663 48 0 0 chr4 87184820 87184903 -68445217 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 1250 246 128 0 0 chr4 87184939 87184978 -68445142 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 3 1250 259 284 135 18 chr4 87185002 87185113 -68445007 + MTEb LTR MaLR 249 372 -7 3 1250 654 304 60 39 chr4 87185242 87185579 -68444541 - MLT1A0 LTR MaLR -7 367 37 3 1250 1592 66 0 0 chr4 87185580 87185778 -68444342 + L1_Mus1 LINE L1 6369 6566 -1 3 1250 1508 91 0 0 chr4 87185817 87186016 -68444104 - L1_Mus4 LINE L1 -429 6207 6009 3 1250 8619 128 17 13 chr4 87186004 87186445 -68443675 + L1_Mus4 LINE L1 4523 4946 -937 3 1250 4909 101 7 13 chr4 87186445 87186728 -68443392 - L1_Mus3 LINE L1 -6 6632 6353 3 1250 3518 38 5 5 chr4 87186728 87187124 -68442996 + MTA_Mm LTR MaLR 1 396 0 3 1250 4909 101 7 13 chr4 87187124 87187514 -68442606 - L1_Mus3 LINE L1 -286 6352 5963 3 1250 8619 107 16 6 chr4 87187514 87189171 -68440949 + L1_Mus4 LINE L1 4947 6635 -1 3 1250 538 240 123 8 chr4 87190212 87190342 -68439778 + RSINE1 SINE B4 5 149 -16 3 1250 243 250 144 22 chr4 87191240 87191330 -68438790 + MTEa LTR MaLR 1 101 -269 3 1250 462 65 0 0 chr4 87191365 87191427 -68438693 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1250 244 325 38 61 chr4 87191451 87191582 -68438538 + MTEa LTR MaLR 200 327 -52 3 1250 537 282 41 27 chr4 87191614 87191760 -68438360 - RSINE1 SINE B4 -17 148 1 3 1250 271 268 89 29 chr4 87191997 87192186 -68437934 - L1M5 LINE L1 -625 5539 5342 3 1250 21 0 0 0 chr4 87192893 87192914 -68437206 + AT_rich Low_complexity Low_complexity 1 21 0 3 1250 213 94 0 0 chr4 87193132 87193164 -68436956 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1250 9151 129 20 7 chr4 87193870 87195484 -68434636 - Lx2B LINE L1 -1 6999 5368 3 1250 559 72 10 40 chr4 87195495 87195596 -68434524 - L1Md_F2 LINE L1 0 6582 6485 3 1250 32 67 0 0 chr4 87195752 87195812 -68434308 + AT_rich Low_complexity Low_complexity 1 60 0 3 1250 335 23 23 0 chr4 87195826 87195870 -68434250 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1250 183 133 0 0 chr4 87196139 87196169 -68433951 - L2c LINE L2 0 3387 3358 3 1250 2104 143 17 98 chr4 87196279 87196689 -68433431 - MTC LTR MaLR 0 378 2 3 1250 6826 178 59 55 chr4 87196690 87198192 -68431928 - MTC-int LTR MaLR 0 1509 2 3 1250 2702 160 0 5 chr4 87198195 87198610 -68431510 - MTC LTR MaLR -8 413 1 3 1250 1003 183 105 0 chr4 87198668 87198859 -68431261 - ORR1C2 LTR MaLR -173 211 1 3 1250 265 324 48 0 chr4 87199232 87199337 -68430783 + L1M4 LINE L1 4818 4927 -1219 3 1250 1649 109 86 0 chr4 87199361 87199618 -68430502 + Lx2A1 LINE L1 6728 7006 -2 3 1250 459 245 10 0 chr4 87199666 87199768 -68430352 + B3 SINE B2 114 216 0 3 1250 230 326 95 0 chr4 87199789 87199884 -68430236 + PB1D9 SINE Alu 1 104 -16 3 1250 363 149 0 0 chr4 87199888 87199962 -68430158 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1250 441 95 0 0 chr4 87200806 87200869 -68429251 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1250 432 0 0 0 chr4 87200869 87200916 -68429204 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1250 186 376 145 27 chr4 87201774 87201960 -68428160 + MIRb SINE MIR 45 252 -16 3 1250 229 350 82 65 chr4 87202346 87202578 -68427542 - L2c LINE L2 -12 3375 3140 3 1250 875 219 197 18 chr4 87202733 87203007 -68427113 + ORR1D2 LTR MaLR 13 335 -35 3 1250 3493 36 3 0 chr4 87203568 87203952 -68426168 - IAPEY_LTR LTR ERVK 0 385 1 3 1250 26 50 0 0 chr4 87204119 87204159 -68425961 + AT_rich Low_complexity Low_complexity 1 40 0 3 1250 31947 97 8 1 chr4 87204162 87207565 -68422555 - L1_Mus1 LINE L1 -1 6566 3143 3 1250 210 37 0 0 chr4 87207565 87207592 -68422528 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1250 31947 158 26 41 chr4 87207592 87210514 -68419606 - L1_Mus1 LINE L1 -2741 3142 217 3 1250 9356 84 57 19 chr4 87210524 87212317 -68417803 - Lx3A LINE L1 -2 6979 5179 3 1250 201 74 0 0 chr4 87212318 87212345 -68417775 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 3 1250 1018 259 104 34 chr4 87212945 87213273 -68416847 + ORR1E LTR MaLR 6 356 -3 3 1250 199 200 140 35 chr4 87213659 87213716 -68416404 + MIR3 SINE MIR 13 75 -133 3 1250 325 133 32 32 chr4 87213924 87213986 -68416134 + PB1D9 SINE Alu 57 118 -2 3 1250 360 81 13 26 chr4 87213996 87214072 -68416048 + (CAAAA)n Simple_repeat Simple_repeat 4 78 0 3 1250 1707 181 79 15 chr4 87214279 87214621 -68415499 + ORR1D1 LTR MaLR 11 374 0 3 1250 22 0 0 0 chr4 87215699 87215721 -68414399 + AT_rich Low_complexity Low_complexity 1 22 0 3 1250 200 222 44 0 chr4 87216283 87216328 -68413792 - L2a LINE L2 -5 3421 3375 3 1250 246 62 0 0 chr4 87217220 87217252 -68412868 + (CAA)n Simple_repeat Simple_repeat 3 34 0 3 1250 230 222 105 53 chr4 87217590 87217666 -68412454 + ID4 SINE ID 4 83 0 3 1250 4518 30 0 0 chr4 87218209 87218702 -68411418 - L1Md_T LINE L1 0 6582 6090 3 1250 437 213 0 9 chr4 87218757 87218866 -68411254 + (CATATA)n Simple_repeat Simple_repeat 6 113 0 3 1250 207 82 0 0 chr4 87220520 87220556 -68409564 + MIRc SINE MIR 69 107 -161 3 1250 2433 98 3 58 chr4 87221459 87221805 -68408315 - ORR1A2 LTR MaLR 0 327 1 3 1250 224 154 19 0 chr4 87225134 87225186 -68404934 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1250 553 286 67 0 chr4 87225215 87225334 -68404786 + RSINE1 SINE B4 3 129 -36 3 1250 231 36 0 0 chr4 87225346 87225374 -68404746 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 3 1250 5602 144 2 1 chr4 87225380 87226337 -68403783 + L1_Mm LINE L1 4412 5369 -514 3 1250 189 0 0 0 chr4 87226348 87226369 -68403751 + (CTGTG)n Simple_repeat Simple_repeat 1 21 0 3 1250 1652 26 0 0 chr4 87226821 87227011 -68403109 + B2_Mm1t SINE B2 2 191 -2 3 1250 1145 68 0 0 chr4 87227211 87227348 -68402772 + B1_Mus1 SINE Alu 2 138 -10 3 1250 224 30 0 29 chr4 87227348 87227382 -68402738 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1250 215 333 51 0 chr4 87228912 87228990 -68401130 - ID4 SINE ID 0 83 2 3 1250 6973 107 9 46 chr4 87229840 87230328 -68399792 + Lx LINE L1 5355 5841 -42 3 1250 1006 103 0 76 chr4 87230328 87230486 -68399634 + B1_Mus1 SINE Alu 3 148 0 3 1250 6973 83 17 48 chr4 87230486 87231331 -68398789 + Lx LINE L1 5842 6654 0 3 1250 658 290 0 79 chr4 87233954 87234257 -68395863 - Lx9 LINE L1 -529 7115 6837 3 1250 1543 260 46 2 chr4 87234267 87234787 -68395333 + L1M2 LINE L1 4279 4821 -1322 3 1250 691 162 281 0 chr4 87234898 87235058 -68395062 + B3 SINE B2 2 206 -10 3 1250 21 0 0 0 chr4 87235058 87235079 -68395041 + AT_rich Low_complexity Low_complexity 1 21 0 3 1250 553 315 58 33 chr4 87236131 87236374 -68393746 - MER58B DNA MER1_type -56 285 37 3 1250 716 33 11 0 chr4 87236634 87236725 -68393395 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 3 1250 31 26 0 0 chr4 87237185 87237223 -68392897 + AT_rich Low_complexity Low_complexity 1 38 0 3 1250 325 282 0 64 chr4 87237508 87237633 -68392487 + PB1D10 SINE Alu 1 117 0 3 1250 24 53 0 0 chr4 87237895 87237933 -68392187 + AT_rich Low_complexity Low_complexity 1 38 0 3 1250 494 170 340 0 chr4 87238132 87238238 -68391882 + B1_Mur1 SINE Alu 1 142 -7 3 1250 247 392 29 0 chr4 87238665 87238767 -68391353 - MLT1J2 LTR MaLR -155 293 189 3 1250 238 342 81 0 chr4 87240346 87240457 -68389663 + MIRc SINE MIR 85 204 -64 3 1250 21 0 0 0 chr4 87241046 87241067 -68389053 + AT_rich Low_complexity Low_complexity 1 21 0 3 1250 1388 74 5 21 chr4 87241243 87241435 -68388685 + B2_Mm1t SINE B2 1 189 -4 3 1250 4007 123 69 21 chr4 87241539 87242400 -68387720 + L1_Mus1 LINE L1 441 1344 -5380 3 1250 6870 81 29 2 chr4 87242411 87243776 -68386344 + L1_Mus1 LINE L1 5175 6567 0 3 1250 185 94 31 0 chr4 87243787 87243819 -68386301 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 3 1250 636 209 71 1 chr4 87244822 87244975 -68385145 + MTE2a LTR MaLR 217 379 0 3 1250 867 226 57 21 chr4 87245501 87245695 -68384425 - B3 SINE B2 -14 202 2 3 1250 435 211 0 0 chr4 87247040 87247135 -68382985 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 1250 401 264 45 11 chr4 87247135 87247223 -68382897 + PB1D7 SINE Alu 28 118 -2 3 1250 189 107 0 0 chr4 87247490 87247518 -68382602 + (CAGC)n Simple_repeat Simple_repeat 4 31 0 3 1250 667 179 74 54 chr4 87247896 87248044 -68382076 - ORR1D1 LTR MaLR -223 151 1 3 1250 2203 225 55 65 chr4 87248445 87249059 -68381061 + RMER19C LTR ERVK 1 608 -3 4 1250 270 0 0 0 chr4 87249778 87249808 -68380312 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1250 3074 124 41 58 chr4 87249872 87250439 -68379681 + Lx4A LINE L1 6502 7058 0 4 1250 246 194 83 0 chr4 87250924 87250996 -68379124 + L1MC4 LINE L1 1025 1102 -5113 4 1250 374 39 19 0 chr4 87251340 87251392 -68378728 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1250 530 289 35 21 chr4 87251392 87251537 -68378583 - B3 SINE B2 -68 148 2 4 1250 287 49 24 0 chr4 87251792 87251833 -68378287 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1250 702 256 8 0 chr4 87252259 87252388 -68377732 - B3 SINE B2 -84 132 3 4 1250 280 200 162 27 chr4 87252463 87252516 -68377604 - RMER17C LTR ERVK -135 275 218 4 1250 603 27 0 0 chr4 87252516 87252589 -68377531 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 1250 280 200 162 27 chr4 87252589 87252720 -68377400 - RMER17C LTR ERVK -193 217 66 4 1250 786 311 97 84 chr4 87252751 87253658 -68376462 + L1MB4 LINE L1 5256 6174 -6 4 1250 1957 326 16 24 chr4 87253820 87254618 -68375502 + Lx8 LINE L1 6537 7328 -145 4 1250 22 0 0 0 chr4 87254794 87254816 -68375304 + AT_rich Low_complexity Low_complexity 1 22 0 4 1250 191 88 29 0 chr4 87254858 87254892 -68375228 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1250 441 282 19 0 chr4 87254895 87254998 -68375122 - PB1D10 SINE Alu -9 108 4 4 1250 554 261 42 32 chr4 87255173 87255363 -68374757 + B3A SINE B2 1 192 -6 4 1250 225 320 13 0 chr4 87256469 87256544 -68373576 - ID2 SINE ID -3 80 5 4 1250 330 354 60 12 chr4 87256557 87256723 -68373397 - MIR SINE MIR -11 251 78 4 1250 601 317 57 26 chr4 87257471 87258114 -68372006 + L1M2c LINE L1 1798 2514 -3975 4 1250 5600 82 4 12 chr4 87258677 87260184 -68369936 + L1Md_F LINE L1 480 1973 -3910 4 1250 333 62 0 0 chr4 87260184 87260232 -68369888 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1250 248 114 0 0 chr4 87260232 87260276 -68369844 + MusHAL1 LINE L1 774 817 -1895 4 1250 36638 8 2 7 chr4 87260277 87265682 -68364438 + L1Md_A LINE L1 214 5586 -297 4 1250 8770 16 1 0 chr4 87265682 87266677 -68363443 + L1Md_A LINE L1 5587 6582 0 4 1250 21635 76 6 7 chr4 87266679 87269800 -68360320 + L1_Mm LINE L1 2009 5127 -756 4 1250 628 82 0 26 chr4 87269802 87269915 -68360205 + L1Md_F2 LINE L1 6473 6582 0 4 1250 210 191 0 0 chr4 87270449 87270496 -68359624 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1250 351 0 0 0 chr4 87270499 87270538 -68359582 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1250 495 0 0 0 chr4 87270538 87270592 -68359528 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1250 1503 233 104 5 chr4 87271230 87271605 -68358515 - MTD LTR MaLR 0 419 8 4 1250 634 258 110 78 chr4 87272230 87272512 -68357608 + B4 SINE B4 2 292 0 4 1250 240 111 0 0 chr4 87272623 87272659 -68357461 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1250 289 242 15 95 chr4 87272992 87273129 -68356991 - RLTR11B LTR ERVK -138 315 190 4 1250 947 80 0 21 chr4 87273226 87273237 -68356883 + L1Md_F2 LINE L1 5795 5805 -777 4 1250 4629 70 8 16 chr4 87273237 87273878 -68356242 - L1Md_F2 LINE L1 0 6582 5948 4 1250 947 80 0 21 chr4 87273878 87274005 -68356115 + L1Md_F2 LINE L1 5806 5930 -652 4 1250 1389 322 81 61 chr4 87274017 87275356 -68354764 - MYSERV-int LTR ERVK -1393 5157 3793 4 1250 598 295 118 44 chr4 87275510 87275918 -68354202 + L1MA5 LINE L1 5828 6265 -35 4 1250 8611 8 0 0 chr4 87276162 87277508 -68352612 - L1Md_T LINE L1 0 6582 5237 4 1250 23 33 0 0 chr4 87277637 87277667 -68352453 + AT_rich Low_complexity Low_complexity 1 30 0 4 1250 312 311 11 32 chr4 87277741 87277834 -68352286 - RSINE1 SINE B4 -73 92 2 4 1250 724 138 139 4 chr4 87278135 87278292 -68351828 - ORR1C2 LTR MaLR -3 381 213 4 1250 558 43 0 0 chr4 87278292 87278361 -68351759 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1250 580 153 81 58 chr4 87278361 87278376 -68351744 - ORR1C2 LTR MaLR -166 212 199 4 1250 241 225 225 0 chr4 87278399 87278479 -68351641 - ORR1C2 LTR MaLR -276 98 1 4 1250 2606 247 112 20 chr4 87279207 87279806 -68350314 + L1MA8 LINE L1 5145 5773 -518 4 1250 270 0 0 0 chr4 87279806 87279836 -68350284 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1250 2606 244 123 13 chr4 87279836 87280262 -68349858 + L1MA8 LINE L1 5774 6271 -20 4 1250 270 329 63 54 chr4 87281037 87281259 -68348861 + MIRb SINE MIR 35 258 -10 4 1250 236 246 0 0 chr4 87281694 87281751 -68348369 - B1F SINE Alu -52 97 41 4 1250 395 243 54 0 chr4 87282300 87282411 -68347709 + MER5A1 DNA MER1_type 46 162 -4 4 1250 444 111 0 0 chr4 87282981 87283062 -68347058 + (TCTG)n Simple_repeat Simple_repeat 2 82 0 4 1250 728 263 160 14 chr4 87283110 87283392 -68346728 + MLT1D LTR MaLR 180 502 -3 4 1250 255 61 0 0 chr4 87283882 87283915 -68346205 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1250 209 402 9 9 chr4 87285101 87285209 -68344911 + MIRc SINE MIR 55 162 -106 4 1250 490 239 13 139 chr4 87285437 87285588 -68344532 + RSINE1 SINE B4 34 165 0 4 1250 2193 92 13 22 chr4 87285828 87286140 -68343980 + RLTR27 LTR ERVK 1 309 0 4 1250 273 216 22 159 chr4 87286610 87286748 -68343372 - MTEb LTR MaLR -21 358 240 4 1250 306 48 0 0 chr4 87287064 87287106 -68343014 + RLTR10B2 LTR ERVK 1 42 -250 4 1250 1849 85 83 51 chr4 87287128 87287464 -68342656 + RLTR10B2 LTR ERVK 18 364 -1 4 1250 21 0 0 0 chr4 87288387 87288408 -68341712 + AT_rich Low_complexity Low_complexity 1 21 0 4 1250 369 0 0 0 chr4 87289095 87289136 -68340984 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1250 396 59 0 0 chr4 87289136 87289186 -68340934 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1250 418 248 73 9 chr4 87289210 87289320 -68340800 + PB1D10 SINE Alu 1 117 0 4 1250 251 190 0 17 chr4 87289450 87289509 -68340611 + GA-rich Low_complexity Low_complexity 3 60 0 4 1250 542 290 32 13 chr4 87289938 87290069 -68340051 + RSINE1 SINE B4 2 137 -28 4 1250 237 65 0 0 chr4 87290069 87290100 -68340020 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1250 542 290 32 13 chr4 87290100 87290125 -68339995 + RSINE1 SINE B4 138 161 -4 4 1250 2034 189 74 59 chr4 87290291 87290591 -68339529 - RMER15 LTR ERVL -1 574 289 4 1250 400 293 97 92 chr4 87290591 87290940 -68339180 - ORR1E LTR MaLR -4 355 5 4 1250 2034 189 74 59 chr4 87290940 87291179 -68338941 - RMER15 LTR ERVL -287 288 27 4 1250 298 197 0 146 chr4 87291198 87291287 -68338833 - RMER15 LTR ERVL -499 76 1 4 1250 404 286 0 0 chr4 87291319 87291416 -68338704 + B3A SINE B2 5 101 -97 4 1250 444 257 53 71 chr4 87291416 87291642 -68338478 + BGLII_B LTR ERVK 1 222 -219 4 1250 306 314 11 11 chr4 87291905 87291992 -68338128 + B3A SINE B2 96 182 -16 4 1250 1089 63 0 0 chr4 87291993 87292135 -68337985 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 4 1250 222 297 40 0 chr4 87292863 87292937 -68337183 - ID4_ SINE ID -5 78 2 4 1250 397 302 15 30 chr4 87292941 87293074 -68337046 - B1F SINE Alu -7 142 12 4 1250 1433 214 85 3 chr4 87293089 87293417 -68336703 - MTD LTR MaLR -64 355 1 4 1251 486 120 0 0 chr4 87294853 87294928 -68335192 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1251 297 0 0 0 chr4 87295196 87295229 -68334891 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1251 603 142 0 0 chr4 87295229 87295349 -68334771 + (GA)n Simple_repeat Simple_repeat 2 121 0 4 1251 322 324 29 0 chr4 87295838 87295940 -68334180 - PB1D7 SINE Alu -6 114 10 4 1251 193 29 29 29 chr4 87295949 87295984 -68334136 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1251 1169 36 0 0 chr4 87295984 87296122 -68333998 - B1_Mus1 SINE Alu -9 139 2 4 1251 895 317 174 11 chr4 87296423 87296901 -68333219 - Arthur1B DNA Tip100 -669 556 1 4 1251 241 338 92 6 chr4 87296930 87297094 -68333026 - MARNA DNA Mariner -171 415 238 4 1251 398 53 0 17 chr4 87297996 87298054 -68332066 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 4 1251 573 187 14 7 chr4 87298112 87298252 -68331868 + GA-rich Low_complexity Low_complexity 1 141 0 4 1251 219 341 0 23 chr4 87299495 87299582 -68330538 + G-rich Low_complexity Low_complexity 5 89 0 4 1251 409 341 71 77 chr4 87300151 87300516 -68329604 - ORR1D2 LTR MaLR -7 363 1 4 1251 2601 286 118 63 chr4 87300766 87302543 -68327577 + Charlie1 DNA MER1_type 908 2781 0 4 1251 186 319 98 32 chr4 87302579 87302702 -68327418 + L2c LINE L2 3257 3387 0 4 1251 327 73 44 0 chr4 87305386 87305454 -68324666 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 4 1251 662 159 0 0 chr4 87305838 87305945 -68324175 - B1_Mur3 SINE Alu -1 148 42 4 1251 608 249 24 0 chr4 87305945 87306114 -68324006 + (CCTG)n Simple_repeat Simple_repeat 2 174 0 4 1251 968 191 11 0 chr4 87306053 87306231 -68323889 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 4 1251 318 211 0 0 chr4 87306237 87306294 -68323826 - B1F2 SINE Alu -92 57 1 4 1251 615 27 0 0 chr4 87306826 87306899 -68323221 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1251 492 369 0 13 chr4 87306923 87307074 -68323046 - RSINE1 SINE B4 -11 154 6 4 1251 750 276 6 32 chr4 87307201 87307451 -68322669 - L1MB1 LINE L1 -244 5924 5686 4 1251 328 331 3 7 chr4 87307455 87307599 -68322521 + L1MB1 LINE L1 5966 6107 -205 4 1251 681 321 88 24 chr4 87307899 87308240 -68321880 - MLT1A0 LTR MaLR -2 363 1 4 1251 978 263 76 92 chr4 87308269 87308638 -68321482 + MTE2a LTR MaLR 8 370 -9 4 1251 456 220 29 29 chr4 87310174 87310277 -68319843 + PB1D7 SINE Alu 1 103 -17 4 1251 298 292 71 77 chr4 87310373 87310670 -68319450 + L1ME3A LINE L1 5736 6030 -143 4 1251 201 121 0 0 chr4 87311780 87311813 -68318307 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1251 742 275 158 17 chr4 87312311 87312666 -68317454 - MTD LTR MaLR -14 405 1 4 1251 426 300 40 13 chr4 87312712 87312864 -68317256 - MLT1E1 LTR MaLR -36 618 463 4 1251 216 162 0 0 chr4 87315068 87315105 -68315015 + G-rich Low_complexity Low_complexity 1 37 0 4 1251 1911 142 52 55 chr4 87315737 87316103 -68314017 - Lx4B LINE L1 0 7058 6694 4 1251 249 83 0 0 chr4 87316395 87316431 -68313689 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1251 287 200 88 20 chr4 87316588 87316690 -68313430 + L1M5 LINE L1 5118 5226 -920 5 1251 441 0 0 0 chr4 87317888 87317937 -68312183 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1251 298 230 108 0 chr4 87319729 87319803 -68310317 + PB1D10 SINE Alu 2 83 -34 5 1251 214 151 0 54 chr4 87319811 87319867 -68310253 + CT-rich Low_complexity Low_complexity 2 54 0 5 1251 288 0 0 0 chr4 87319870 87319902 -68310218 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1251 32 26 0 0 chr4 87320376 87320415 -68309705 + AT_rich Low_complexity Low_complexity 1 39 0 5 1251 38718 30 0 0 chr4 87320419 87326842 -68303278 - L1Md_T LINE L1 0 6585 66 5 1251 183 312 30 61 chr4 87328856 87328955 -68301165 + MIRb SINE MIR 24 119 -149 5 1251 1331 211 113 21 chr4 87328981 87329353 -68300767 + MTD LTR MaLR 14 419 0 5 1251 1026 207 80 6 chr4 87330148 87330404 -68299716 - MTD LTR MaLR -49 347 72 5 1251 207 0 0 0 chr4 87330404 87330427 -68299693 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1251 3375 60 0 0 chr4 87330427 87330861 -68299259 + MusHAL1 LINE L1 2279 2712 0 5 1251 249 321 26 35 chr4 87331774 87331887 -68298233 - MIRc SINE MIR -64 144 33 5 1251 21 0 0 0 chr4 87332925 87332946 -68297174 + AT_rich Low_complexity Low_complexity 1 21 0 5 1251 637 126 0 0 chr4 87333089 87333184 -68296936 + MTD LTR MaLR 1 95 -324 5 1251 4846 142 4 0 chr4 87333193 87333898 -68296222 - MERVL_2A-int LTR ERVL -3723 2038 1331 5 1251 1230 252 33 10 chr4 87333901 87334201 -68295919 + MTD LTR MaLR 113 419 0 5 1251 21 0 0 0 chr4 87334820 87334841 -68295279 + AT_rich Low_complexity Low_complexity 1 21 0 5 1251 333 0 0 0 chr4 87334984 87335021 -68295099 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1251 405 0 0 0 chr4 87335806 87335851 -68294269 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1251 924 285 28 66 chr4 87336018 87336382 -68293738 + ORR1E LTR MaLR 3 352 -7 5 1251 350 291 195 68 chr4 87336445 87336681 -68293439 - B4A SINE B4 0 292 27 5 1251 25 51 0 0 chr4 87336702 87336741 -68293379 + AT_rich Low_complexity Low_complexity 1 39 0 5 1251 398 242 8 0 chr4 87336966 87337090 -68293030 + (TG)n Simple_repeat Simple_repeat 2 126 0 5 1251 885 248 44 140 chr4 87337701 87338114 -68292006 - MTEa LTR MaLR -2 377 5 5 1251 523 311 66 55 chr4 87338644 87338982 -68291138 + MER47B DNA MER2_type 12 416 -2 5 1251 252 374 7 37 chr4 87338988 87339124 -68290996 + MLT1A0 LTR MaLR 36 167 -198 5 1251 196 319 42 0 chr4 87339315 87339387 -68290733 + MIR SINE MIR 21 95 -113 5 1251 767 276 75 45 chr4 87339658 87339950 -68290170 - MLT1A0 LTR MaLR -53 312 12 5 1251 575 200 17 29 chr4 87340217 87340365 -68289755 + MT2A LTR ERVL 1 134 -341 5 1251 352 277 8 16 chr4 87340344 87340479 -68289641 + MT2A LTR ERVL 242 452 -149 5 1251 197 65 32 0 chr4 87340511 87340542 -68289578 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 5 1251 239 195 24 56 chr4 87340547 87340672 -68289448 + (TATAA)n Simple_repeat Simple_repeat 3 123 0 5 1251 282 148 0 69 chr4 87340672 87340730 -68289390 + MT2A LTR ERVL 531 584 0 5 1251 449 332 93 23 chr4 87340790 87341006 -68289114 + MIR SINE MIR 28 258 -4 5 1251 369 252 65 8 chr4 87340997 87341121 -68288999 + MIRb SINE MIR 83 213 -55 5 1251 416 186 0 121 chr4 87341341 87341457 -68288663 + MT2B LTR ERVL 163 264 -337 5 1251 1025 65 0 0 chr4 87341353 87341491 -68288629 + B1_Mm SINE Alu 9 146 -1 5 1251 196 77 51 0 chr4 87341492 87341531 -68288589 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 5 1251 941 268 31 71 chr4 87341789 87342142 -68287978 - ORR1E LTR MaLR -20 339 1 5 1251 663 87 45 34 chr4 87342604 87342782 -68287338 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1251 234 62 0 0 chr4 87343552 87343584 -68286536 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1251 342 341 158 14 chr4 87343739 87344036 -68286084 - MLT1L LTR MaLR -122 488 149 5 1251 378 0 0 0 chr4 87344477 87344519 -68285601 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1251 201 277 0 0 chr4 87344567 87344614 -68285506 - MIRc SINE MIR -115 153 107 5 1251 261 0 0 0 chr4 87344723 87344752 -68285368 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1251 394 300 30 53 chr4 87345407 87345576 -68284544 + MER5B DNA MER1_type 5 169 -9 5 1251 246 349 47 0 chr4 87346253 87346339 -68283781 - L2b LINE L2 -9 3366 3277 5 1251 183 298 53 0 chr4 87346345 87346402 -68283718 - MIRm SINE MIR -1 275 216 5 1251 520 177 21 29 chr4 87346821 87347097 -68283023 + GA-rich Low_complexity Low_complexity 1 274 0 5 1251 345 324 78 21 chr4 87347521 87347817 -68282303 - MLT1G1 LTR MaLR 0 579 241 5 1251 1983 67 20 0 chr4 87348061 87348315 -68281805 + L1_Mus1 LINE L1 6254 6512 -55 5 1251 255 244 36 12 chr4 87349309 87349392 -68280728 + MIRb SINE MIR 81 165 -103 5 1251 185 35 69 0 chr4 87350787 87350816 -68279304 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1251 201 224 20 0 chr4 87351194 87351243 -68278877 + MIRb SINE MIR 155 204 -64 5 1251 944 161 0 11 chr4 87352235 87352417 -68277703 + CT-rich Low_complexity Low_complexity 1 180 0 5 1251 293 242 30 0 chr4 87352477 87352543 -68277577 - ID4 SINE ID -13 70 3 5 1251 251 302 34 43 chr4 87352560 87352695 -68277425 - PB1D7 SINE Alu -9 141 14 5 1251 304 286 9 37 chr4 87354466 87354575 -68275545 - L2c LINE L2 -5 3382 3277 5 1251 425 90 15 0 chr4 87354678 87354745 -68275375 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1251 406 280 17 8 chr4 87354748 87354867 -68275253 - RSINE1 SINE B4 -43 122 3 5 1251 240 59 0 0 chr4 87355914 87355948 -68274172 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 5 1251 306 219 26 40 chr4 87355988 87356064 -68274056 - L4 LINE RTE -168 1861 1787 5 1251 277 290 42 31 chr4 87357105 87357201 -68272919 + MTEa LTR MaLR 1 97 -282 5 1251 327 356 77 22 chr4 87357989 87358170 -68271950 - L2 LINE L2 -491 2928 2738 5 1251 467 291 0 0 chr4 87360934 87361051 -68269069 + MLT1C LTR MaLR 350 466 -1 5 1251 906 298 75 11 chr4 87361563 87361939 -68268181 - L1ME3A LINE L1 -80 6093 5694 5 1251 474 279 52 10 chr4 87361972 87362164 -68267956 - L1ME3A LINE L1 -1567 4579 4380 5 1251 7472 92 7 4 chr4 87362182 87363196 -68266924 - L1_Mus3 LINE L1 0 6638 5622 5 1251 293 258 178 7 chr4 87363567 87363719 -68266401 - MIR SINE MIR -1 261 84 5 1251 316 288 109 31 chr4 87363893 87364187 -68265933 - L1ME4a LINE L1 -238 5886 5570 5 1251 557 273 55 6 chr4 87365454 87365643 -68264477 - MLT2B4 LTR ERVL -49 513 323 5 1251 270 337 0 33 chr4 87365658 87365750 -68264370 - ID_B1 SINE B4 -134 90 2 5 1251 346 337 43 79 chr4 87365750 87366003 -68264117 + MLT1B LTR MaLR 147 467 0 5 1251 382 286 34 0 chr4 87367384 87367503 -68262617 - PB1 SINE Alu -2 125 3 5 1251 356 240 3 76 chr4 87367671 87367756 -68262364 + B3A SINE B2 72 157 -59 5 1251 405 109 0 0 chr4 87367756 87367820 -68262300 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1251 356 250 8 77 chr4 87367820 87367882 -68262238 + B3A SINE B2 156 210 -6 5 1251 268 320 26 0 chr4 87368110 87368188 -68261932 + MLT1G1 LTR MaLR 54 133 -446 5 1251 669 293 77 4 chr4 87368352 87368612 -68261508 + MLT1G1 LTR MaLR 301 579 0 5 1251 625 238 126 29 chr4 87370070 87370308 -68259812 - B4A SINE B4 -27 265 5 5 1251 321 325 159 5 chr4 87370474 87370669 -68259451 - MLT1C LTR MaLR 0 467 243 5 1251 505 239 7 69 chr4 87370701 87370845 -68259275 - MLT1C LTR MaLR -293 174 40 5 1251 207 0 0 0 chr4 87371379 87371402 -68258718 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1251 360 0 0 0 chr4 87372621 87372661 -68257459 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1251 7419 65 8 9 chr4 87373087 87374126 -68255994 + L1_Mus2 LINE L1 5483 6520 -46 5 1251 558 152 71 0 chr4 87374126 87374225 -68255895 + B1_Mur2 SINE Alu 44 149 0 5 1251 596 93 0 10 chr4 87374225 87374323 -68255797 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 5 1251 212 256 107 24 chr4 87374881 87374965 -68255155 - MIRb SINE MIR -71 197 107 5 1251 245 350 25 17 chr4 87375087 87375206 -68254914 - MIR SINE MIR -34 228 109 5 1251 773 222 30 15 chr4 87375966 87376184 -68253936 - ORR1D1 LTR MaLR -151 233 3 5 1251 216 158 0 0 chr4 87376276 87376333 -68253787 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 5 1251 360 0 0 0 chr4 87376753 87376793 -68253327 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 5 1251 1901 250 110 101 chr4 87377994 87379224 -68250896 - L1MC1 LINE L1 0 6333 5104 5 1251 303 287 9 9 chr4 87379397 87379506 -68250614 - L1M5 LINE L1 -458 5666 5558 5 1251 270 125 0 0 chr4 87379578 87379626 -68250494 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1251 8354 132 38 51 chr4 87379966 87381582 -68248538 - ORR1D1-int LTR MaLR -296 1667 73 5 1251 275 296 74 0 chr4 87382307 87382442 -68247678 - MER113 DNA MER1_type -121 400 256 5 1251 211 336 50 8 chr4 87383345 87383465 -68246655 + MIRb SINE MIR 55 179 -89 5 1251 195 42 0 0 chr4 87384243 87384267 -68245853 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1251 201 279 162 52 chr4 87386665 87386801 -68243319 - L2a LINE L2 -1 3425 3275 5 1251 488 339 95 24 chr4 87387034 87387403 -68242717 - L2a LINE L2 -395 3024 2630 5 1251 615 207 25 8 chr4 87387733 87387855 -68242265 + RSINE1 SINE B4 8 131 -34 5 1251 212 320 13 0 chr4 87388366 87388444 -68241676 - L2a LINE L2 -10 3416 3338 5 1251 1148 70 0 7 chr4 87388724 87388868 -68241252 + B1_Mm SINE Alu 5 147 0 5 1251 528 244 0 39 chr4 87388888 87389016 -68241104 + RSINE1 SINE B4 10 132 -33 5 1251 206 121 0 0 chr4 87389075 87389108 -68241012 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1251 3366 95 23 4 chr4 87389326 87389800 -68240320 + L1Md_F2 LINE L1 6100 6582 0 5 1251 279 0 0 0 chr4 87390365 87390396 -68239724 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1251 308 380 44 22 chr4 87390527 87390756 -68239364 + L1MC LINE L1 5539 5772 -2110 5 1251 2144 80 13 0 chr4 87392365 87392664 -68237456 - ORR1A2 LTR MaLR -24 303 1 6 1251 225 373 91 32 chr4 87392681 87392966 -68237154 - MLT1C LTR MaLR -162 305 4 6 1251 3408 73 5 2 chr4 87392997 87393434 -68236686 + L1_Mus1 LINE L1 6128 6565 -2 6 1251 470 273 30 18 chr4 87393505 87393669 -68236451 - LTR33A_ LTR ERVL -28 503 338 6 1251 249 33 0 0 chr4 87394069 87394099 -68236021 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1251 207 0 0 0 chr4 87394457 87394480 -68235640 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1251 261 0 0 0 chr4 87394595 87394624 -68235496 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1251 180 0 0 0 chr4 87394825 87394845 -68235275 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1251 252 296 57 0 chr4 87395195 87395283 -68234837 + MamGypLTR1a LTR Gypsy 639 731 -53 6 1251 195 298 0 0 chr4 87395409 87395456 -68234664 + L2b LINE L2 3329 3375 0 6 1251 558 0 0 0 chr4 87396037 87396099 -68234021 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1251 285 288 128 0 chr4 87396271 87396396 -68233724 - L2b LINE L2 -2 3373 3233 6 1251 213 163 0 0 chr4 87396508 87396557 -68233563 + C-rich Low_complexity Low_complexity 1 49 0 6 1251 915 261 59 87 chr4 87397749 87398139 -68231981 - MTEa LTR MaLR 0 379 1 6 1251 5058 118 29 20 chr4 87399197 87400165 -68229955 - RMER17B LTR ERVK 0 958 1 6 1251 2915 167 66 42 chr4 87400639 87401228 -68228892 - L1Md_F LINE L1 -5659 860 258 6 1251 198 0 0 0 chr4 87401727 87401749 -68228371 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1251 216 0 0 0 chr4 87401749 87401772 -68228348 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1251 3286 55 2 2 chr4 87401839 87402239 -68227881 + MTB LTR MaLR 1 400 0 6 1251 548 71 36 0 chr4 87402275 87402359 -68227761 + (TCTCCC)n Simple_repeat Simple_repeat 5 91 0 6 1251 593 316 11 0 chr4 87403018 87403208 -68226912 + Lx9 LINE L1 7245 7436 -208 6 1251 459 0 0 0 chr4 87403228 87403279 -68226841 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1251 230 0 33 0 chr4 87403371 87403401 -68226719 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1251 211 277 0 0 chr4 87403972 87404037 -68226083 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 6 1251 549 319 67 138 chr4 87404485 87404844 -68225276 + MLT1F2 LTR MaLR 129 489 -71 6 1251 193 29 59 0 chr4 87404844 87404878 -68225242 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6 1251 549 319 67 138 chr4 87404878 87404980 -68225140 + MLT1F2 LTR MaLR 490 557 -3 6 1251 1297 259 62 63 chr4 87405452 87406004 -68224116 - RLTR20B3 LTR ERVK -26 551 1 6 1251 686 229 0 6 chr4 87407603 87407783 -68222337 + CT-rich Low_complexity Low_complexity 1 179 0 6 1251 181 57 57 0 chr4 87409116 87409151 -68220969 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1251 6179 137 56 8 chr4 87409363 87410458 -68219662 - L1_Mur1 LINE L1 -2053 3833 2687 6 1251 1389 229 55 44 chr4 87410460 87410825 -68219295 + Lx2B LINE L1 6632 7000 0 6 1251 321 26 0 0 chr4 87411155 87411193 -68218927 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1251 238 288 192 40 chr4 87411394 87411614 -68218506 - MIRc SINE MIR -13 255 2 6 1251 384 97 0 0 chr4 87411930 87411992 -68218128 + (CAG)n Simple_repeat Simple_repeat 2 63 0 6 1251 22 0 0 0 chr4 87413292 87413314 -68216806 + AT_rich Low_complexity Low_complexity 1 22 0 6 1251 252 247 45 0 chr4 87413807 87413896 -68216224 + (CTCA)n Simple_repeat Simple_repeat 2 94 0 6 1251 207 69 0 0 chr4 87416424 87416453 -68213667 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1251 180 0 0 0 chr4 87417055 87417075 -68213045 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1251 270 0 0 0 chr4 87417182 87417212 -68212908 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 6 1251 21 36 0 0 chr4 87418172 87418200 -68211920 + AT_rich Low_complexity Low_complexity 1 28 0 6 1251 627 176 124 168 chr4 87420491 87420717 -68209403 + B3 SINE B2 1 216 0 6 1251 537 110 0 0 chr4 87421543 87421643 -68208477 + (CA)n Simple_repeat Simple_repeat 2 101 0 6 1251 1132 81 0 0 chr4 87422020 87422168 -68207952 - B1_Mus1 SINE Alu 0 148 1 6 1251 332 313 34 17 chr4 87422321 87422438 -68207682 + PB1D7 SINE Alu 1 119 -1 6 1251 306 0 0 0 chr4 87422468 87422502 -68207618 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 6 1251 252 86 0 0 chr4 87422865 87422900 -68207220 + (TAA)n Simple_repeat Simple_repeat 3 37 0 6 1251 21 0 0 0 chr4 87423366 87423387 -68206733 + AT_rich Low_complexity Low_complexity 1 21 0 6 1251 244 87 86 14 chr4 87423533 87423603 -68206517 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1251 501 17 0 0 chr4 87423830 87423888 -68206232 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1251 2692 114 35 2 chr4 87424216 87424619 -68205501 - Lx4A LINE L1 -15 7043 6628 6 156 34 55 0 0 chr4 87425006 87425061 -68205059 + AT_rich Low_complexity Low_complexity 1 55 0 6 1252 384 119 0 0 chr4 87425509 87425568 -68204552 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1252 588 95 0 0 chr4 87425568 87425652 -68204468 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1252 494 320 117 35 chr4 87426679 87426860 -68203260 + MER2 DNA MER2_type 3 202 -143 6 1252 1234 101 31 26 chr4 87426860 87427053 -68203067 + B2_Mm2 SINE B2 1 194 -1 6 1252 494 320 117 35 chr4 87427053 87427153 -68202967 + MER2 DNA MER2_type 203 307 -38 6 1252 751 298 14 37 chr4 87428328 87428544 -68201576 + B3A SINE B2 6 216 0 6 1252 183 397 0 0 chr4 87430718 87430791 -68199329 + L3b LINE CR1 409 481 -1 6 1252 250 311 9 28 chr4 87432511 87432617 -68197503 + MLT1A1 LTR MaLR 26 129 -279 6 1252 274 242 0 125 chr4 87432840 87432944 -68197176 + ORR1E LTR MaLR 269 359 0 6 1252 204 182 0 0 chr4 87436447 87436491 -68193629 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1252 631 236 172 0 chr4 87437495 87437669 -68192451 - ID_B1 SINE B4 -9 215 12 6 1252 765 278 10 35 chr4 87438056 87438257 -68191863 + B3 SINE B2 15 210 -6 6 1252 261 0 0 0 chr4 87438815 87438844 -68191276 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1252 402 307 35 0 chr4 87440236 87440350 -68189770 + MamSINE1 SINE tRNA 10 127 -163 6 1252 423 248 140 0 chr4 87441841 87441965 -68188155 + B1_Mur1 SINE Alu 6 147 -1 6 1252 297 0 0 0 chr4 87442146 87442179 -68187941 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1252 293 280 84 0 chr4 87442179 87442286 -68187834 + B3 SINE B2 101 216 0 6 1252 3543 89 10 15 chr4 87442286 87442767 -68187353 + L1Md_F2 LINE L1 6047 6525 -57 6 1252 198 167 0 0 chr4 87442788 87442824 -68187296 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 6 1252 244 177 97 0 chr4 87442987 87443049 -68187071 - MTD LTR MaLR -14 405 338 6 1252 844 271 35 56 chr4 87443062 87443347 -68186773 - MTD LTR MaLR -140 279 1 6 1252 312 27 0 0 chr4 87443612 87443649 -68186471 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1252 31 26 0 0 chr4 87444180 87444218 -68185902 + AT_rich Low_complexity Low_complexity 1 38 0 6 1252 261 372 80 7 chr4 87444918 87445056 -68185064 + MLT1A LTR MaLR 37 184 -190 6 1252 207 0 0 0 chr4 87448716 87448739 -68181381 + (TATG)n Simple_repeat Simple_repeat 2 24 0 6 1252 288 0 0 0 chr4 87449350 87449382 -68180738 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1252 207 100 0 0 chr4 87449811 87449841 -68180279 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1252 222 333 81 30 chr4 87450410 87450509 -68179611 + L4 LINE RTE 1724 1827 -202 6 1252 206 370 117 37 chr4 87453152 87453340 -68176780 + MIR SINE MIR 60 262 0 6 1252 733 267 24 28 chr4 87453601 87453813 -68176307 + B3 SINE B2 1 211 -5 6 1252 1391 71 22 5 chr4 87454031 87454215 -68175905 - B2_Mm2 SINE B2 -7 188 2 6 1252 288 148 43 43 chr4 87455629 87455721 -68174399 + Lx9 LINE L1 7548 7639 -5 6 1252 488 333 121 0 chr4 87457239 87457437 -68172683 - MER58A DNA MER1_type -2 222 1 6 1252 279 0 0 0 chr4 87458326 87458357 -68171763 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1252 246 305 87 34 chr4 87459208 87459415 -68170705 + L1MB8 LINE L1 5784 6001 -177 6 1252 471 243 18 18 chr4 87459811 87459924 -68170196 - PB1D9 SINE Alu -7 113 1 6 1252 4253 136 22 15 chr4 87460569 87461241 -68168879 + Lx4A LINE L1 6382 7058 0 6 1252 198 0 0 0 chr4 87462081 87462103 -68168017 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1252 559 137 49 0 chr4 87462247 87462349 -68167771 - B1_Mus2 SINE Alu -5 142 36 6 1252 23 0 0 0 chr4 87464920 87464943 -68165177 + AT_rich Low_complexity Low_complexity 1 23 0 6 1252 845 292 67 19 chr4 87466541 87466957 -68163163 + L1MA4 LINE L1 5749 6184 -116 6 1252 1920 236 80 83 chr4 87467877 87468576 -68161544 + Lx8 LINE L1 6575 7271 -202 6 1252 378 0 0 0 chr4 87469954 87469996 -68160124 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1252 240 265 50 10 chr4 87470494 87470593 -68159527 + L1MC5 LINE L1 6985 7087 -874 6 1252 420 226 235 0 chr4 87471212 87471327 -68158793 + B1F SINE Alu 7 148 -1 6 1252 887 71 0 135 chr4 87471560 87471751 -68158369 + L1_Mus1 LINE L1 6427 6567 0 6 1252 9096 14 0 0 chr4 87472686 87474531 -68155589 - L1Md_T LINE L1 0 6582 4779 6 1252 364 310 35 65 chr4 87475457 87475626 -68154494 + RSINE1 SINE B4 2 165 0 6 1252 510 346 12 42 chr4 87475656 87475822 -68154298 + RSINE1 SINE B4 4 164 -1 6 1252 621 261 131 25 chr4 87476089 87476333 -68153787 + B4A SINE B4 2 271 -21 6 1252 500 285 23 23 chr4 87477079 87477212 -68152908 + RSINE1 SINE B4 4 136 -29 6 1252 217 312 11 21 chr4 87477531 87477626 -68152494 + GA-rich Low_complexity Low_complexity 4 97 0 7 1252 21 36 0 0 chr4 87477736 87477764 -68152356 + AT_rich Low_complexity Low_complexity 1 28 0 7 1252 388 294 443 0 chr4 87477787 87477988 -68152132 + B4A SINE B4 2 292 0 7 1252 247 221 13 105 chr4 87478078 87478154 -68151966 + ID SINE ID 10 78 -146 7 1252 225 293 13 39 chr4 87478161 87478239 -68151881 + B1_Mus1 SINE Alu 28 103 -45 7 1252 399 160 0 0 chr4 87478265 87478340 -68151780 + GA-rich Low_complexity Low_complexity 2 76 0 7 1252 229 273 0 70 chr4 87479162 87479233 -68150887 - B1_Mus2 SINE Alu -78 69 4 7 1252 925 244 34 0 chr4 87479773 87479982 -68150138 + B3 SINE B2 1 216 0 7 1252 712 180 215 0 chr4 87481370 87481542 -68148578 - URR1B DNA MER1_type -14 211 3 7 1252 311 299 129 21 chr4 87481838 87481978 -68148142 + HAL1-3A_ME LINE L1 2285 2439 -419 7 1252 183 286 78 0 chr4 87482242 87482319 -68147801 - MIRm SINE MIR -154 122 40 7 1252 479 194 91 10 chr4 87482716 87482815 -68147305 + B1F SINE Alu 22 128 -21 7 1252 198 0 0 0 chr4 87482822 87482844 -68147276 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 7 1252 441 180 261 0 chr4 87482916 87483027 -68147093 + B1_Mur3 SINE Alu 1 140 -9 7 1252 353 243 14 0 chr4 87483141 87483215 -68146905 - B4A SINE B4 -1 291 217 7 1252 545 233 31 25 chr4 87483368 87483531 -68146589 - Lx9 LINE L1 -221 7423 7260 7 1252 688 295 47 24 chr4 87483553 87483765 -68146355 - B4A SINE B4 -62 230 14 7 1252 893 162 7 0 chr4 87484244 87484380 -68145740 - B1_Mur4 SINE Alu -13 137 1 7 1252 270 304 0 0 chr4 87484865 87484934 -68145186 - Charlie9 DNA MER1_type -2669 88 20 7 1252 966 63 0 0 chr4 87487144 87487270 -68142850 + (CTG)n Simple_repeat Simple_repeat 1 126 0 7 1252 841 109 80 0 chr4 87487353 87487490 -68142630 - URR1A DNA MER1_type 0 226 79 7 1252 1061 212 25 0 chr4 87488478 87488681 -68141439 + B3 SINE B2 2 209 -7 7 1252 22 0 0 0 chr4 87489730 87489752 -68140368 + AT_rich Low_complexity Low_complexity 1 22 0 7 1252 537 257 60 7 chr4 87489793 87489942 -68140178 + RSINE1 SINE B4 3 159 -6 7 1252 545 239 43 50 chr4 87490174 87490315 -68139805 + B1F2 SINE Alu 5 144 -5 7 1252 522 257 60 69 chr4 87490325 87490542 -68139578 + B3 SINE B2 2 216 0 7 1252 766 222 85 80 chr4 87492568 87492744 -68137376 + B3A SINE B2 4 180 -15 7 1252 298 295 74 28 chr4 87493080 87493188 -68136932 - Tigger7 DNA MER2_type -2372 119 7 7 1252 189 214 0 0 chr4 87493820 87493862 -68136258 + A-rich Low_complexity Low_complexity 1 42 0 7 1252 225 367 59 59 chr4 87494850 87494913 -68135207 - MIR SINE MIR -119 143 79 7 1252 333 0 0 0 chr4 87494913 87494950 -68135170 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1252 225 367 59 59 chr4 87494950 87495022 -68135098 - MIR SINE MIR -184 78 8 7 1252 453 116 0 0 chr4 87495078 87495147 -68134973 + (TC)n Simple_repeat Simple_repeat 1 69 0 7 1252 870 306 15 30 chr4 87496057 87496326 -68133794 + B4A SINE B4 2 266 -26 7 1252 25 31 0 0 chr4 87496675 87496707 -68133413 + AT_rich Low_complexity Low_complexity 1 32 0 7 1252 1833 250 75 34 chr4 87497068 87497709 -68132411 + Lx7 LINE L1 6741 7407 -289 7 1252 923 308 64 41 chr4 87498556 87498897 -68131223 + RMER5 LTR ERV1 47 386 -148 7 1252 2175 47 0 21 chr4 87498897 87499177 -68130943 + L1Md_F3 LINE L1 6310 6583 -1 7 1252 923 308 64 41 chr4 87499177 87499302 -68130818 + RMER5 LTR ERV1 387 523 -11 7 1252 321 313 118 35 chr4 87499624 87499962 -68130158 + Lx8 LINE L1 7014 7379 -94 7 1252 216 0 0 0 chr4 87500007 87500031 -68130089 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 1 1252 198 140 17 50 chr4 87500118 87500178 -68129942 + GA-rich Low_complexity Low_complexity 2 59 0 2 1252 760 293 6 0 chr4 87501029 87501210 -68128910 + B3A SINE B2 1 182 -16 3 1252 342 0 0 0 chr4 87501239 87501277 -68128843 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1252 765 211 95 81 chr4 87501287 87501450 -68128670 + B3 SINE B2 3 169 -47 5 1252 351 119 0 0 chr4 87501450 87501517 -68128603 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1252 765 211 95 81 chr4 87501517 87501564 -68128556 + B3 SINE B2 170 216 0 5 1252 288 329 24 0 chr4 87501589 87501674 -68128446 + B1F SINE Alu 1 87 -62 7 1252 988 258 86 11 chr4 87501969 87502236 -68127884 + B4A SINE B4 4 290 -2 8 1252 313 287 11 33 chr4 87502522 87502612 -68127508 + L2a LINE L2 3333 3420 -6 9 1252 181 345 11 45 chr4 87502619 87502707 -68127413 - L2c LINE L2 -19 3368 3284 1 1252 269 274 48 16 chr4 87503221 87503347 -68126773 + L1MC4 LINE L1 7434 7563 -479 1 1252 1070 273 117 10 chr4 87505474 87505884 -68124236 + Lx8 LINE L1 6857 7310 -163 1 1252 22 70 0 0 chr4 87505978 87506021 -68124099 + AT_rich Low_complexity Low_complexity 1 43 0 1 1252 1070 90 0 6 chr4 87507011 87507168 -68122952 + (GAAA)n Simple_repeat Simple_repeat 1 156 0 1 1252 387 62 0 95 chr4 87507368 87507494 -68122626 + (CCCCAG)n Simple_repeat Simple_repeat 1 114 0 1 1252 459 0 0 0 chr4 87507604 87507655 -68122465 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 1 1252 737 218 14 21 chr4 87507658 87507803 -68122317 + B1_Mur2 SINE Alu 6 149 0 1 1252 357 214 8 31 chr4 87508094 87508224 -68121896 + (TGG)n Simple_repeat Simple_repeat 2 128 0 1 1252 868 234 208 22 chr4 87508224 87508455 -68121665 - B4A SINE B4 -17 275 2 1 1252 243 0 0 0 chr4 87509446 87509473 -68120647 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1252 29 0 0 0 chr4 87509636 87509665 -68120455 + AT_rich Low_complexity Low_complexity 1 29 0 2 1252 244 217 22 0 chr4 87509686 87509732 -68120388 - Alu SINE Alu -116 59 13 2 1252 294 224 91 10 chr4 87511829 87511928 -68118192 + L1MC LINE L1 5352 5458 -2424 2 1252 24 0 0 0 chr4 87513855 87513879 -68116241 + AT_rich Low_complexity Low_complexity 1 24 0 2 1252 316 244 43 22 chr4 87514463 87514552 -68115568 + RCHARR1 DNA MER1_type 3 93 -881 2 1252 577 293 92 138 chr4 87514552 87514761 -68115359 + B4A SINE B4 2 221 -71 2 1252 512 264 134 27 chr4 87514761 87514948 -68115172 + B3 SINE B2 3 209 -7 2 1252 577 293 92 138 chr4 87514948 87515043 -68115077 + B4A SINE B4 222 292 0 2 1252 566 311 69 15 chr4 87515043 87515245 -68114875 + RCHARR1 DNA MER1_type 88 300 -674 2 1252 1195 248 114 61 chr4 87515346 87515714 -68114406 + RCHARR1 DNA MER1_type 432 844 -130 2 1252 1494 86 0 9 chr4 87515714 87515925 -68114195 + L1_Mus2 LINE L1 6358 6566 0 2 1252 1195 248 114 61 chr4 87515925 87516063 -68114057 + RCHARR1 DNA MER1_type 845 965 -9 2 1252 6339 78 2 2 chr4 87517130 87517975 -68112145 - L1_Mus4 LINE L1 0 6636 5792 2 1252 282 29 0 0 chr4 87518108 87518143 -68111977 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1252 1161 102 0 0 chr4 87518407 87518573 -68111547 + L1_Mus1 LINE L1 6402 6567 0 3 1252 308 289 181 16 chr4 87519242 87519435 -68110685 + RMER15 LTR ERVL 280 504 -71 3 1252 679 266 52 0 chr4 87521441 87521614 -68108506 - B3A SINE B2 -16 182 1 3 1252 903 147 0 0 chr4 87521920 87522097 -68108023 + (GGGA)n Simple_repeat Simple_repeat 4 180 0 3 1252 583 253 13 128 chr4 87522387 87522614 -68107506 + B3 SINE B2 1 201 -15 3 1252 369 218 47 28 chr4 87523331 87523435 -68106685 - B1_Mur1 SINE Alu -37 112 9 3 1252 566 307 89 36 chr4 87523734 87524227 -68105893 + L1MB7 LINE L1 5337 5855 -329 3 1252 284 200 12 0 chr4 87524374 87524454 -68105666 + CT-rich Low_complexity Low_complexity 2 82 0 3 1252 246 62 0 0 chr4 87524455 87524487 -68105633 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 3 1252 1116 146 68 10 chr4 87526367 87526574 -68103546 + URR1B DNA MER1_type 5 223 -2 4 1252 469 298 52 6 chr4 87526941 87527113 -68103007 + B3A SINE B2 2 181 -17 4 1252 282 250 128 20 chr4 87527713 87527815 -68102305 + MLT1A0 LTR MaLR 1 113 -261 4 1252 675 291 78 10 chr4 87527841 87528150 -68101970 + Lx8 LINE L1 6858 7187 -286 4 1252 491 284 75 25 chr4 87528380 87528579 -68101541 + MLT1A0 LTR MaLR 154 362 -3 4 1252 529 214 0 37 chr4 87528992 87529099 -68101021 - PB1D10 SINE Alu -14 103 1 4 1252 461 303 6 79 chr4 87529832 87529997 -68100123 + RSINE1 SINE B4 3 155 -10 4 1252 557 276 0 0 chr4 87529950 87530073 -68100047 - B1_Mur2 SINE Alu -15 134 12 4 1252 650 320 29 19 chr4 87530071 87530278 -68099842 - B4 SINE B4 -81 211 3 4 1252 455 257 43 0 chr4 87530465 87530605 -68099515 + Lx6 LINE L1 7291 7436 -24 4 1252 234 0 0 0 chr4 87531583 87531609 -68098511 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1252 739 248 149 22 chr4 87532481 87532749 -68097371 + ORR1D2 LTR MaLR 69 370 0 5 1252 252 77 0 0 chr4 87533363 87533402 -68096718 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1252 693 285 35 5 chr4 87533635 87533669 -68096451 - B3 SINE B2 -8 208 171 5 1252 519 17 0 0 chr4 87533669 87533729 -68096391 + (TATG)n Simple_repeat Simple_repeat 3 62 0 5 1252 693 285 35 5 chr4 87533729 87533895 -68096225 - B3 SINE B2 -46 170 2 5 1252 338 154 0 30 chr4 87536285 87536352 -68093768 - HAL1-3A_ME LINE L1 -818 2040 1976 5 1252 344 0 0 150 chr4 87536414 87536621 -68093499 + (CTGTG)n Simple_repeat Simple_repeat 5 180 0 5 1252 200 143 24 0 chr4 87536618 87536660 -68093460 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 5 1252 628 298 28 79 chr4 87536691 87536906 -68093214 - ID_B1 SINE B4 -20 204 1 5 1252 872 209 58 44 chr4 87538495 87538700 -68091420 - B3 SINE B2 -7 209 2 5 1252 25 51 0 0 chr4 87538819 87538858 -68091262 + AT_rich Low_complexity Low_complexity 1 39 0 5 1252 313 295 83 8 chr4 87539686 87539819 -68090301 - B1F SINE Alu -6 143 1 6 1252 255 293 0 100 chr4 87540493 87540603 -68089517 - PB1D10 SINE Alu -1 116 18 6 1252 213 257 0 0 chr4 87540629 87540664 -68089456 - B1F2 SINE Alu -113 36 2 6 1252 333 140 0 0 chr4 87541358 87541415 -68088705 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1252 313 162 73 0 chr4 87541436 87541504 -68088616 - RMER1B Other Other -603 463 391 6 1252 1717 195 147 52 chr4 87541544 87541969 -68088151 + RMER1B Other Other 460 918 -148 6 1252 306 0 0 0 chr4 87541969 87542003 -68088117 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1252 1717 195 147 52 chr4 87542003 87542129 -68087991 + RMER1B Other Other 919 1062 -4 6 1252 189 0 0 0 chr4 87543786 87543807 -68086313 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1252 369 214 214 0 chr4 87544349 87544438 -68085682 - PB1D9 SINE Alu -11 109 2 6 1252 332 218 76 0 chr4 87546563 87546647 -68083473 + PB1D10 SINE Alu 5 98 -19 6 1252 202 262 38 0 chr4 87546980 87547060 -68083060 + T-rich Low_complexity Low_complexity 1 83 0 7 1252 219 130 43 0 chr4 87547012 87547058 -68083062 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 7 1252 607 242 65 5 chr4 87547634 87547792 -68082328 - ID_B1 SINE B4 -46 246 82 7 1252 567 0 0 0 chr4 87547792 87547855 -68082265 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 7 1252 489 273 0 69 chr4 87548355 87548528 -68081592 + RSINE1 SINE B4 4 164 -1 7 1252 448 248 62 99 chr4 87549166 87549184 -68080936 + B4A SINE B4 78 227 -60 7 1252 847 145 14 0 chr4 87549184 87549322 -68080798 + B1_Mur3 SINE Alu 8 147 -2 7 1252 293 277 15 0 chr4 87549675 87549740 -68080380 + MTEa LTR MaLR 4 69 -290 7 1252 356 211 73 29 chr4 87549830 87549948 -68080172 + MTEa LTR MaLR 256 379 0 7 1252 744 165 50 14 chr4 87550236 87550377 -68079743 - B1_Mur2 SINE Alu -1 148 3 7 1252 395 298 166 7 chr4 87550669 87550980 -68079140 + Tigger7 DNA MER2_type 39 411 -2080 7 1252 795 291 13 17 chr4 87550981 87551219 -68078901 + Tigger7 DNA MER2_type 2255 2490 -1 7 1252 227 197 0 76 chr4 87553275 87553341 -68076779 + B3 SINE B2 145 205 -11 8 1252 535 259 28 14 chr4 87554767 87554908 -68075212 + RSINE1 SINE B4 1 143 -22 8 1252 412 245 95 11 chr4 87555320 87555415 -68074705 + PB1D10 SINE Alu 15 117 0 8 1253 316 244 85 0 chr4 87557023 87557105 -68073015 - ID_B1 SINE B4 0 224 136 8 1253 465 308 117 50 chr4 87558087 87558309 -68071811 + ORR1E LTR MaLR 3 239 -120 8 1253 734 323 54 4 chr4 87558324 87558585 -68071535 + B4A SINE B4 1 274 -18 8 1253 288 91 0 0 chr4 87558592 87558636 -68071484 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1253 217 320 12 60 chr4 87558711 87558783 -68071337 + (CATA)n Simple_repeat Simple_repeat 1 73 0 8 1253 378 0 0 0 chr4 87558783 87558825 -68071295 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1253 233 274 0 16 chr4 87558825 87558918 -68071202 + (CA)n Simple_repeat Simple_repeat 1 91 0 8 1253 297 75 0 0 chr4 87559746 87559786 -68070334 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1253 558 263 43 7 chr4 87559797 87559935 -68070185 - RSINE1 SINE B4 -18 147 5 9 1253 506 211 159 16 chr4 87560723 87560866 -68069254 - B3 SINE B2 -30 168 4 9 1253 552 293 109 69 chr4 87561073 87561348 -68068772 - B4A SINE B4 -5 287 2 9 1253 340 306 0 47 chr4 87561403 87561417 -68068703 - ID_B1 SINE B4 -17 207 87 9 1253 566 232 0 9 chr4 87561417 87561530 -68068590 - B1_Mur1 SINE Alu -32 117 6 9 1253 576 283 113 31 chr4 87561676 87562092 -68068028 + L1MA6 LINE L1 5571 6020 -280 9 1253 236 272 65 22 chr4 87562208 87562346 -68067774 + L1MA6 LINE L1 6164 6300 0 9 1253 37 52 0 0 chr4 87562992 87563050 -68067070 + AT_rich Low_complexity Low_complexity 1 58 0 9 1253 566 209 7 41 chr4 87563651 87563796 -68066324 - RSINE1 SINE B4 -24 141 2 9 1253 409 309 104 16 chr4 87564053 87564178 -68065942 + RSINE1 SINE B4 1 136 -29 9 1253 450 256 185 26 chr4 87564254 87564439 -68065681 + B4A SINE B4 16 230 -62 9 1253 430 325 56 38 chr4 87564439 87564599 -68065521 + RSINE1 SINE B4 3 165 0 1 1253 252 250 0 30 chr4 87564599 87564665 -68065455 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1253 180 0 0 0 chr4 87564669 87564689 -68065431 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1 1253 248 304 14 0 chr4 87564728 87564797 -68065323 + B4 SINE B4 222 291 -1 9 1253 22 0 0 0 chr4 87564827 87564849 -68065271 + AT_rich Low_complexity Low_complexity 1 22 0 1 1253 213 119 0 0 chr4 87565283 87565325 -68064795 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1253 897 262 30 5 chr4 87565353 87565556 -68064564 - B3 SINE B2 -8 208 1 1 1253 297 317 33 0 chr4 87565745 87565865 -68064255 + MER5A1 DNA MER1_type 39 162 -4 1 1253 198 0 0 0 chr4 87565892 87565914 -68064206 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1253 248 297 17 67 chr4 87567640 87567759 -68062361 - L1M5 LINE L1 -407 5757 5645 1 1253 343 347 40 40 chr4 87567855 87568077 -68062043 + ORR1E LTR MaLR 27 248 -111 1 1253 211 305 0 37 chr4 87568081 87568190 -68061930 + (CCA)n Simple_repeat Simple_repeat 1 105 0 1 1253 330 271 9 48 chr4 87568190 87568330 -68061790 + ORR1E LTR MaLR 237 367 -12 1 1253 265 296 103 32 chr4 87568354 87568539 -68061581 - L1MC LINE L1 -2183 5602 5405 1 1253 630 257 176 28 chr4 87568593 87568946 -68061174 - MLT1C LTR MaLR -52 415 11 1 1253 1436 72 28 0 chr4 87569618 87569798 -68060322 + B2_Mm2 SINE B2 2 186 -9 1 1253 782 238 128 49 chr4 87570309 87570574 -68059546 - B4A SINE B4 0 292 7 1 1253 237 98 0 0 chr4 87571092 87571133 -68058987 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1253 284 291 38 19 chr4 87571262 87571367 -68058753 + B3A SINE B2 13 119 -79 1 1253 616 272 63 94 chr4 87571580 87571803 -68058317 + ID_B1 SINE B4 1 216 -8 1 1253 616 305 172 13 chr4 87571916 87572114 -68058006 + L1MA8 LINE L1 5061 5303 -840 1 1253 207 0 0 0 chr4 87572114 87572137 -68057983 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1253 1116 253 152 25 chr4 87572137 87572435 -68057685 + L1MA8 LINE L1 5302 5734 -566 1 1253 459 0 0 0 chr4 87572435 87572486 -68057634 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1253 1455 253 111 28 chr4 87572486 87572522 -68057598 + L1MA8 LINE L1 5735 5780 -511 1 1253 402 74 0 0 chr4 87572522 87572576 -68057544 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1253 1455 247 74 30 chr4 87572576 87573048 -68057072 + L1MA8 LINE L1 5781 6279 -12 1 1253 534 287 22 22 chr4 87573048 87573187 -68056933 + ID_B1 SINE B4 78 216 -8 1 1253 1041 222 19 14 chr4 87573789 87573999 -68056121 + B3 SINE B2 1 211 -5 1 1253 325 253 33 33 chr4 87575468 87575558 -68054562 - PB1D10 SINE Alu -6 111 22 1 1253 534 319 0 0 chr4 87575734 87575869 -68054251 + RSINE1 SINE B4 29 163 -2 1 1253 365 264 115 0 chr4 87576375 87576462 -68053658 + PB1D7 SINE Alu 1 97 -23 1 1253 50 18 0 0 chr4 87577315 87577372 -68052748 + AT_rich Low_complexity Low_complexity 1 57 0 1 1253 752 241 14 91 chr4 87578429 87578639 -68051481 + B3A SINE B2 2 195 -3 1 1253 384 200 23 34 chr4 87578641 87578729 -68051391 + B1_Mur1 SINE Alu 63 149 0 1 1253 30 0 0 0 chr4 87579130 87579160 -68050960 + AT_rich Low_complexity Low_complexity 1 30 0 1 1253 430 293 31 62 chr4 87579911 87580104 -68050016 + MER5A DNA MER1_type 3 189 0 1 1253 1238 276 8 81 chr4 87580622 87580992 -68049128 - MER54A LTR ERVL -2 899 557 1 1253 1257 297 96 8 chr4 87580998 87581436 -68048684 - MER54A LTR ERVL -460 441 19 1 1253 572 286 47 39 chr4 87581452 87581643 -68048477 + B3A SINE B2 1 195 0 1 1253 372 292 50 21 chr4 87582325 87582465 -68047655 - HERVL74-int LTR ERVL -2033 3652 3509 1 1253 330 295 120 11 chr4 87582490 87582665 -68047455 - HERVL74-int LTR ERVL -2367 3318 3125 1 1253 5748 66 3 8 chr4 87582955 87583659 -68046461 - L1Md_F2 LINE L1 0 6582 5883 1 1253 231 271 0 0 chr4 87585467 87585526 -68044594 + L1MD3 LINE L1 6820 6878 -1164 1 1253 334 342 80 15 chr4 87585631 87585830 -68044290 + L1MD3 LINE L1 7131 7342 -540 1 1253 455 297 60 25 chr4 87585943 87586143 -68043977 + L1MD3 LINE L1 7604 7810 -185 1 1253 1170 119 19 8 chr4 87586429 87586621 -68043499 + B2_Mm2 SINE B2 1 211 -5 1 1253 277 24 48 0 chr4 87586643 87586685 -68043435 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1253 982 178 119 16 chr4 87586698 87586892 -68043228 + B3 SINE B2 3 216 0 1 1253 999 250 15 5 chr4 87586953 87587158 -68042962 - B3 SINE B2 -9 207 1 1 1253 645 271 26 0 chr4 87588041 87588192 -68041928 + RSINE1 SINE B4 9 163 -2 1 1253 183 182 0 120 chr4 87588444 87588494 -68041626 - MER5A DNA MER1_type -111 78 35 1 1253 321 188 0 30 chr4 87588505 87588571 -68041549 + L1MC1 LINE L1 6258 6321 -12 1 1253 48 32 0 0 chr4 87588817 87588879 -68041241 + AT_rich Low_complexity Low_complexity 1 62 0 1 1253 629 279 164 81 chr4 87590057 87590704 -68039416 - L1ME3A LINE L1 -230 5943 5243 1 1253 704 318 106 3 chr4 87591502 87591786 -68038334 - Tigger8 DNA MER2_type -28 638 326 1 1253 399 210 0 0 chr4 87591830 87591953 -68038167 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1253 23 54 0 0 chr4 87592093 87592130 -68037990 + AT_rich Low_complexity Low_complexity 1 37 0 1 1253 636 306 0 0 chr4 87592954 87593098 -68037022 + RSINE1 SINE B4 2 145 -20 1 1253 357 125 0 0 chr4 87593100 87593156 -68036964 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1253 595 246 79 71 chr4 87593292 87593559 -68036561 + L1M2 LINE L1 4131 4399 -1744 1 1253 1018 301 129 12 chr4 87593572 87594154 -68035966 + L1M2 LINE L1 4597 5246 -897 1 1253 269 247 40 27 chr4 87594154 87594229 -68035891 + PB1D10 SINE Alu 42 117 0 1 1253 413 208 56 56 chr4 87594574 87594681 -68035439 - PB1D9 SINE Alu -1 119 13 1 1253 329 300 54 18 chr4 87594733 87594845 -68035275 - PB1D9 SINE Alu -2 118 3 1 1253 713 276 12 0 chr4 87594845 87594926 -68035194 - ID SINE ID -141 83 1 1 1253 602 222 0 0 chr4 87595180 87595288 -68034832 + PB1D9 SINE Alu 5 112 -8 1 1253 1022 235 59 0 chr4 87595837 87596041 -68034079 - B3 SINE B2 0 216 1 1 1253 531 158 198 8 chr4 87596300 87596421 -68033699 + B1_Mur1 SINE Alu 6 149 0 1 1253 696 212 7 62 chr4 87596454 87596600 -68033520 + B1_Mur2 SINE Alu 2 139 -10 1 1253 405 0 0 0 chr4 87596600 87596645 -68033475 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1253 221 98 98 0 chr4 87596646 87596687 -68033433 + GA-rich Low_complexity Low_complexity 2 46 0 1 1253 207 0 0 0 chr4 87596695 87596718 -68033402 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1253 5073 106 39 11 chr4 87596752 87597292 -68032828 + L1_Mm LINE L1 5047 5586 -297 1 1253 9631 3 0 0 chr4 87597292 87598288 -68031832 + L1Md_A LINE L1 5587 6582 0 1 1253 5073 106 39 11 chr4 87598288 87598547 -68031573 + L1_Mm LINE L1 5587 5868 -15 1 1253 774 248 6 6 chr4 87599015 87599177 -68030943 + B3 SINE B2 48 209 -7 1 1253 1010 157 0 0 chr4 87601639 87601786 -68028334 - B1_Mur4 SINE Alu -1 149 3 1 1253 413 270 112 84 chr4 87601837 87602015 -68028105 - B3A SINE B2 -15 183 1 1 1253 237 232 107 0 chr4 87602819 87602875 -68027245 + ID4_ SINE ID 1 62 -21 1 1253 227 305 101 62 chr4 87602943 87603121 -68026999 - MIR SINE MIR -66 196 12 1 1253 748 266 19 19 chr4 87603199 87603410 -68026710 + ID_B1 SINE B4 1 211 -13 1 1253 212 233 133 0 chr4 87603641 87603701 -68026419 + ID SINE ID 2 69 -155 1 1253 279 0 0 0 chr4 87603703 87603734 -68026386 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1253 313 271 141 91 chr4 87603768 87604044 -68026076 - B4A SINE B4 -1 291 2 1 1253 357 251 144 50 chr4 87604053 87604275 -68025845 + L1MB2 LINE L1 5155 5397 -743 1 1253 228 277 23 57 chr4 87604313 87604401 -68025719 + MLT1A0 LTR MaLR 50 134 -231 1 1253 1041 172 140 10 chr4 87604620 87604820 -68025300 - URR1A DNA MER1_type 0 226 1 1 1253 763 298 112 68 chr4 87604893 87605437 -68024683 + L1MB2 LINE L1 5381 5948 -223 1 1253 2110 181 91 2 chr4 87605805 87606214 -68023906 + MT2A LTR ERVL 1 445 -88 1 1253 34 55 0 0 chr4 87607275 87607330 -68022790 + AT_rich Low_complexity Low_complexity 1 55 0 1 1253 24 0 0 0 chr4 87607680 87607704 -68022416 + AT_rich Low_complexity Low_complexity 1 24 0 1 1253 238 273 89 25 chr4 87607845 87607924 -68022196 + ORR1E LTR MaLR 117 200 -159 1 1253 499 127 0 0 chr4 87608358 87608437 -68021683 - Lx LINE L1 -369 6285 6207 1 1253 920 260 47 0 chr4 87608438 87608630 -68021490 - B3 SINE B2 -14 202 2 1 1253 8939 36 0 0 chr4 87609918 87610911 -68019209 + L1Md_T LINE L1 5590 6582 0 1 1253 245 245 65 56 chr4 87611480 87611588 -68018532 + MT2B LTR ERVL 160 268 -333 1 1253 537 218 113 0 chr4 87611493 87611617 -68018503 + B1_Mur2 SINE Alu 12 149 0 1 1253 1058 179 128 126 chr4 87613184 87613603 -68016517 + MT2A LTR ERVL 1 556 -45 1 1253 456 240 0 0 chr4 87613605 87613726 -68016394 + (TGGA)n Simple_repeat Simple_repeat 3 123 0 1 1253 227 152 22 0 chr4 87613724 87613770 -68016350 + G-rich Low_complexity Low_complexity 3 49 0 1 1253 297 0 0 0 chr4 87614610 87614643 -68015477 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1253 336 294 16 70 chr4 87614643 87614771 -68015349 - HAL1-3A_ME LINE L1 -762 2096 1976 1 1253 474 293 142 51 chr4 87615122 87615496 -68014624 + Charlie2b DNA MER1_type 1855 2262 -520 1 1253 525 306 40 33 chr4 87615594 87615746 -68014374 - RSINE1 SINE B4 -8 157 5 1 1253 214 250 148 37 chr4 87617607 87617715 -68012405 - MER5A DNA MER1_type -23 166 47 1 1253 435 187 245 12 chr4 87618307 87618465 -68011655 + B3 SINE B2 7 197 -1 1 1253 602 60 12 0 chr4 87619474 87619557 -68010563 + (GGGA)n Simple_repeat Simple_repeat 3 86 0 1 1253 207 246 62 47 chr4 87619646 87619710 -68010410 - L2c LINE L2 -2 3385 3321 1 1253 648 252 50 25 chr4 87619940 87620099 -68010021 + MTEa LTR MaLR 16 178 -201 1 1253 285 236 0 0 chr4 87620598 87620653 -68009467 + MTEa LTR MaLR 317 371 -8 1 1253 510 228 67 59 chr4 87620687 87620822 -68009298 + ID_B1 SINE B4 80 215 -9 1 1253 21 0 0 0 chr4 87621183 87621204 -68008916 + AT_rich Low_complexity Low_complexity 1 21 0 1 1253 219 210 132 24 chr4 87622266 87622349 -68007771 - RSINE1 SINE B4 -71 94 3 2 1253 681 194 26 65 chr4 87623248 87623402 -68006718 - B1_Mur1 SINE Alu 0 149 2 2 1253 428 331 145 16 chr4 87624431 87624624 -68005496 - LFSINE_Vert SINE SINE -238 221 4 2 1253 534 261 14 36 chr4 87625405 87625544 -68004576 + RSINE1 SINE B4 2 137 -28 2 1253 322 265 0 0 chr4 87625589 87625657 -68004463 + ID4 SINE ID 8 75 -8 2 1253 194 279 72 14 chr4 87625896 87625965 -68004155 + L2c LINE L2 3283 3355 -32 2 1253 207 0 0 0 chr4 87626249 87626272 -68003848 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1253 324 198 108 24 chr4 87626274 87626357 -68003763 + MT2B LTR ERVL 168 257 -344 2 1253 628 170 19 0 chr4 87626288 87626394 -68003726 + B1_Mus1 SINE Alu 33 140 -8 2 1253 346 157 12 12 chr4 87626398 87626482 -68003638 + GA-rich Low_complexity Low_complexity 4 87 0 2 1253 501 88 0 0 chr4 87628005 87628085 -68002035 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 2 1253 866 248 13 68 chr4 87628087 87628321 -68001799 + ID_B1 SINE B4 3 223 -1 2 1253 307 222 187 30 chr4 87628661 87628811 -68001309 - MIRb SINE MIR -63 205 26 2 1253 521 248 151 34 chr4 87630996 87631377 -67998743 + L1MA9 LINE L1 5110 5538 -774 2 1253 295 235 37 64 chr4 87631374 87631483 -67998637 + L1MA9 LINE L1 5671 5776 -515 2 1253 1106 37 4 55 chr4 87631483 87631737 -67998383 + (GGGAGA)n Simple_repeat Simple_repeat 1 241 0 2 1253 286 308 34 8 chr4 87631759 87631877 -67998243 + L1MA9 LINE L1 5821 5941 -371 2 1253 246 140 158 0 chr4 87631895 87631952 -67998168 + L1MA7 LINE L1 6112 6177 -114 2 1253 399 259 69 51 chr4 87631954 87632129 -67997991 + B2_Mm2 SINE B2 1 178 -17 2 1253 500 171 125 39 chr4 87632387 87632469 -67997651 + B3 SINE B2 76 168 -48 2 1253 495 87 0 0 chr4 87632469 87632538 -67997582 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1253 500 171 125 39 chr4 87632538 87632583 -67997537 + B3 SINE B2 169 213 -3 2 1253 373 228 12 60 chr4 87632817 87632901 -67997219 + ID4 SINE ID 4 83 0 2 1253 247 253 49 25 chr4 87633240 87633321 -67996799 + PB1 SINE Alu 22 104 -23 2 1253 357 82 0 0 chr4 87633323 87633372 -67996748 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 2 1253 435 231 24 13 chr4 87633385 87633498 -67996622 + B1_Mur4 SINE Alu 1 117 -33 2 1253 343 331 8 46 chr4 87633913 87634043 -67996077 - MER5A DNA MER1_type -39 150 26 2 1253 712 325 90 7 chr4 87634175 87634475 -67995645 + MER2 DNA MER2_type 19 343 -2 2 1253 494 204 0 22 chr4 87635053 87635156 -67994964 + B1_Mur3 SINE Alu 1 100 -20 2 1253 216 0 0 0 chr4 87635161 87635185 -67994935 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 1253 273 290 69 98 chr4 87635456 87635659 -67994461 + LTR33B LTR ERVL 284 480 -23 2 1253 273 119 0 0 chr4 87635682 87635724 -67994396 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 2 1253 211 300 43 43 chr4 87635901 87635995 -67994125 + PB1D10 SINE Alu 21 114 -3 2 1253 714 216 70 6 chr4 87636002 87636174 -67993946 + B3A SINE B2 1 183 -15 2 1253 233 300 14 0 chr4 87636209 87636279 -67993841 + MER33 DNA MER1_type 238 308 -16 2 1253 250 231 78 139 chr4 87636723 87636737 -67993383 - RLTR25B LTR ERVK -490 538 489 2 1253 650 246 16 0 chr4 87636737 87636863 -67993257 - B1_Mur2 SINE Alu -21 128 1 2 1253 250 231 78 139 chr4 87636863 87636889 -67993231 - RLTR25B LTR ERVK -490 488 383 2 1253 312 278 0 53 chr4 87637485 87637511 -67992609 + RMER12 LTR ERVK 749 769 -553 2 1253 207 0 0 0 chr4 87637511 87637534 -67992586 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1253 312 278 0 53 chr4 87637534 87637621 -67992499 + RMER12 LTR ERVK 770 856 -466 2 1253 183 80 0 0 chr4 87637629 87637654 -67992466 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1253 483 278 67 31 chr4 87637756 87637949 -67992171 - Lx8 LINE L1 -149 7324 7125 2 1253 396 330 9 9 chr4 87638120 87638236 -67991884 + RSINE1 SINE B4 15 130 -35 2 1253 277 205 64 0 chr4 87638352 87638430 -67991690 + MER2 DNA MER2_type 97 179 -166 2 1253 1747 192 90 3 chr4 87638430 87638774 -67991346 + ORR1D1 LTR MaLR 1 374 0 2 1253 350 251 82 168 chr4 87639133 87639377 -67990743 + MamRep434 DNA TcMar 53 275 -151 2 1253 201 196 0 0 chr4 87639823 87639869 -67990251 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1253 207 88 0 0 chr4 87640064 87640098 -67990022 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1253 369 0 0 0 chr4 87640098 87640138 -67989982 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1253 752 236 81 0 chr4 87640138 87640312 -67989808 - B3 SINE B2 -27 189 2 2 1253 422 285 61 18 chr4 87640606 87640854 -67989266 - L1MC2 LINE L1 -543 5901 5636 2 1253 922 159 35 0 chr4 87640856 87641001 -67989119 + B1_Mur4 SINE Alu 1 150 0 2 1253 180 0 0 0 chr4 87641001 87641021 -67989099 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1253 180 0 0 0 chr4 87641088 87641108 -67989012 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2 1253 900 164 0 22 chr4 87641108 87641245 -67988875 - B1_Mur2 SINE Alu -14 135 2 2 1253 351 309 98 29 chr4 87641246 87641419 -67988701 - MLT1A LTR MaLR -37 328 144 2 1253 365 102 0 0 chr4 87641421 87641470 -67988650 - HAL1-3A_ME LINE L1 -835 2023 1975 2 1253 381 303 111 35 chr4 87641548 87641719 -67988401 - MLT1A LTR MaLR -206 184 1 2 1253 474 206 112 60 chr4 87641719 87641853 -67988267 - L1MC2 LINE L1 -715 5618 5478 2 1253 741 233 68 0 chr4 87641862 87642025 -67988095 - B3 SINE B2 -4 212 39 2 1253 807 204 84 13 chr4 87642402 87642556 -67987564 + B3 SINE B2 1 165 -51 2 1253 255 61 0 0 chr4 87642556 87642589 -67987531 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2 1253 263 244 228 65 chr4 87643048 87643140 -67986980 + PB1D9 SINE Alu 1 107 -13 2 1253 600 27 0 0 chr4 87643766 87643840 -67986280 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1253 218 193 121 17 chr4 87644990 87645048 -67985072 + ID4_ SINE ID 16 79 -4 2 1253 425 213 42 8 chr4 87645158 87645259 -67984861 + B1_Mur4 SINE Alu 7 142 -8 2 1253 198 0 0 0 chr4 87645259 87645281 -67984839 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2 1253 567 267 0 8 chr4 87645812 87645929 -67984191 - B1F2 SINE Alu -12 137 22 2 1253 328 296 61 0 chr4 87645937 87646035 -67984085 - PB1D9 SINE Alu -14 106 3 2 1253 564 42 0 0 chr4 87646072 87646143 -67983977 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1253 369 0 0 0 chr4 87646143 87646183 -67983937 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1253 3676 191 70 108 chr4 87646539 87647601 -67982519 + RMER1B Other Other 45 1065 -1 2 1253 1595 279 136 15 chr4 87647630 87648231 -67981889 + Lx8 LINE L1 6799 7472 -1 2 1253 765 220 70 61 chr4 87648657 87648870 -67981250 + B3 SINE B2 2 216 0 2 1253 557 279 49 6 chr4 87650350 87650512 -67979608 + MER3 DNA MER1_type 40 208 -1 2 1253 201 94 0 0 chr4 87650832 87650864 -67979256 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1253 195 42 0 0 chr4 87650883 87650907 -67979213 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1253 590 287 8 0 chr4 87650914 87651036 -67979084 - RSINE1 SINE B4 -36 129 7 2 1253 304 268 144 78 chr4 87651621 87651665 -67978455 - L1MB8 LINE L1 -15 6163 6125 2 1253 1012 149 0 33 chr4 87651665 87651818 -67978302 + B1_Mur1 SINE Alu 2 149 0 2 1253 304 268 144 78 chr4 87651818 87652044 -67978076 - L1MB8 LINE L1 -54 6124 5875 2 1253 1728 272 105 43 chr4 87652060 87653431 -67976689 - L1MB8 LINE L1 -435 5749 4296 2 1253 21 36 0 0 chr4 87653673 87653701 -67976419 + AT_rich Low_complexity Low_complexity 1 28 0 2 1253 1016 222 24 14 chr4 87654741 87654951 -67975169 - B3 SINE B2 -4 212 1 2 1253 399 301 95 70 chr4 87655398 87655598 -67974522 + B4 SINE B4 14 218 -74 2 1253 426 276 39 23 chr4 87655694 87655824 -67974296 + B4 SINE B4 2 133 -159 2 1253 921 234 44 0 chr4 87655851 87656056 -67974064 + B3 SINE B2 2 215 -1 2 1253 594 240 16 0 chr4 87656111 87656240 -67973880 + B1_Mus2 SINE Alu 14 144 -3 2 1253 495 229 138 8 chr4 87656263 87656393 -67973727 + B1_Mur1 SINE Alu 2 142 -7 2 1253 325 211 53 53 chr4 87657060 87657155 -67972965 + B1_Mm SINE Alu 23 117 -30 2 1253 678 255 6 38 chr4 87657183 87657342 -67972778 - RSINE1 SINE B4 -8 157 4 2 1253 223 85 21 21 chr4 87657834 87657882 -67972238 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2 1253 216 0 0 0 chr4 87658667 87658691 -67971429 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 1253 491 235 75 69 chr4 87659456 87659616 -67970504 + RSINE1 SINE B4 3 163 -2 2 1253 599 242 111 20 chr4 87664718 87664916 -67965204 + B3 SINE B2 1 216 0 2 1253 470 291 72 7 chr4 87664969 87665121 -67964999 - B3A SINE B2 -35 163 2 2 1253 216 0 0 0 chr4 87665434 87665458 -67964662 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1253 261 220 158 10 chr4 87665588 87665689 -67964431 + BC1_Mm scRNA scRNA 1 116 -36 2 1253 484 309 79 0 chr4 87665687 87665852 -67964268 + MER2 DNA MER2_type 151 328 -17 2 1253 608 259 35 7 chr4 87666279 87666423 -67963697 + B1F2 SINE Alu 1 148 -1 2 1253 365 260 91 138 chr4 87666423 87666655 -67963465 + B4 SINE B4 3 223 -69 2 1253 665 211 0 72 chr4 87666661 87666814 -67963306 + B1_Mur2 SINE Alu 8 149 0 2 1253 195 146 0 0 chr4 87667018 87667059 -67963061 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1253 1052 131 6 0 chr4 87668335 87668510 -67961610 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 2 1253 894 229 17 0 chr4 87668581 87668760 -67961360 + B3A SINE B2 2 183 -15 2 1253 266 266 0 12 chr4 87668939 87669019 -67961101 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1253 435 119 0 0 chr4 87669027 87669094 -67961026 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2 1253 537 248 59 15 chr4 87669113 87669248 -67960872 + B1_Mur1 SINE Alu 9 149 0 2 1253 252 0 0 0 chr4 87669943 87669971 -67960149 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1253 401 267 125 7 chr4 87670302 87670438 -67959682 - B3A SINE B2 -33 165 14 3 1253 313 331 29 87 chr4 87670811 87670983 -67959137 + RSINE1 SINE B4 4 165 0 3 1253 574 168 34 34 chr4 87670998 87671115 -67959005 + B1_Mur2 SINE Alu 19 135 -14 3 1253 930 211 45 5 chr4 87671190 87671390 -67958730 - B3 SINE B2 -8 208 1 3 1253 42 57 0 0 chr4 87671722 87671792 -67958328 + AT_rich Low_complexity Low_complexity 1 70 0 3 1253 508 269 35 17 chr4 87672047 87672221 -67957899 - B3A SINE B2 -18 180 4 3 1253 313 267 38 0 chr4 87672272 87672377 -67957743 + GA-rich Low_complexity Low_complexity 5 113 0 3 1253 183 100 0 0 chr4 87673198 87673228 -67956892 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 3 1253 25 0 0 0 chr4 87677237 87677262 -67952858 + GC_rich Low_complexity Low_complexity 1 25 0 3 1253 28 61 0 0 chr4 87677318 87677367 -67952753 + GC_rich Low_complexity Low_complexity 1 49 0 3 1253 25 31 0 0 chr4 87677786 87677818 -67952302 + GC_rich Low_complexity Low_complexity 1 32 0 3 1253 282 286 0 9 chr4 87678746 87678852 -67951268 + G-rich Low_complexity Low_complexity 3 107 0 3 1253 243 0 0 0 chr4 87679202 87679229 -67950891 + (CAG)n Simple_repeat Simple_repeat 2 28 0 3 1253 246 128 0 0 chr4 87679926 87679965 -67950155 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1253 207 162 0 0 chr4 87680428 87680465 -67949655 + GA-rich Low_complexity Low_complexity 2 38 0 3 1253 239 257 92 26 chr4 87681822 87681898 -67948222 + PB1D10 SINE Alu 35 115 -34 3 1253 477 320 74 30 chr4 87682616 87682819 -67947301 + ID_B1 SINE B4 9 220 -4 3 1253 22 0 0 0 chr4 87682819 87682841 -67947279 + AT_rich Low_complexity Low_complexity 1 22 0 3 1253 276 30 0 0 chr4 87683784 87683817 -67946303 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1253 591 310 56 49 chr4 87683962 87684250 -67945870 - B4A SINE B4 0 292 3 3 1253 694 176 180 6 chr4 87684264 87684447 -67945673 - B3 SINE B2 0 216 2 3 1253 409 213 24 0 chr4 87684673 87684800 -67945320 + GA-rich Low_complexity Low_complexity 3 132 0 3 1253 551 275 14 14 chr4 87685167 87685307 -67944813 - B1_Mur1 SINE Alu -8 141 2 3 1253 577 283 18 12 chr4 87685356 87685524 -67944596 + ID_B1 SINE B4 56 224 0 3 1253 441 36 0 0 chr4 87685686 87685741 -67944379 + (TTTTG)n Simple_repeat Simple_repeat 5 59 0 3 1253 741 187 44 7 chr4 87685753 87685888 -67944232 - B1_Mur4 SINE Alu -9 141 2 3 1253 636 269 47 6 chr4 87685939 87686111 -67944009 + B3A SINE B2 2 180 -18 3 1253 370 328 20 56 chr4 87686554 87686806 -67943314 + L1MC4 LINE L1 7411 7653 -389 3 1254 180 0 0 0 chr4 87687208 87687228 -67942892 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1254 640 197 16 0 chr4 87687228 87687350 -67942770 - B1_Mur1 SINE Alu -13 136 13 3 1254 312 216 19 102 chr4 87687254 87687362 -67942758 - MT2B LTR ERVL -338 263 165 3 1254 351 297 20 0 chr4 87687403 87687504 -67942616 - ID_B1 SINE B4 -121 103 1 3 1254 411 21 0 0 chr4 87687892 87687940 -67942180 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1254 1005 89 226 6 chr4 87688382 87688541 -67941579 + B2_Mm2 SINE B2 2 195 0 3 1254 358 188 98 24 chr4 87689469 87689551 -67940569 + B1_Mur4 SINE Alu 14 101 -48 3 1254 756 215 99 5 chr4 87690415 87690607 -67939513 + B3 SINE B2 2 211 -5 3 1254 411 250 29 0 chr4 87690678 87690782 -67939338 + MTE2b LTR MaLR 1 107 -272 3 1254 564 222 8 45 chr4 87690778 87690910 -67939210 - B3 SINE B2 -89 127 1 3 1254 468 35 0 0 chr4 87691024 87691082 -67939038 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1254 414 0 0 0 chr4 87691082 87691127 -67938993 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1254 234 0 0 0 chr4 87691607 87691633 -67938487 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1254 318 276 114 114 chr4 87691892 87692081 -67938039 - B4A SINE B4 -46 246 51 3 1254 870 190 301 12 chr4 87692081 87692118 -67938002 - MTD LTR MaLR 0 419 382 3 1254 468 0 0 0 chr4 87692118 87692170 -67937950 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1254 870 190 301 12 chr4 87692170 87692457 -67937663 - MTD LTR MaLR -38 381 3 3 1254 318 276 114 114 chr4 87692457 87692512 -67937608 - B4A SINE B4 -242 50 3 3 1254 359 236 60 94 chr4 87692605 87692806 -67937314 + B3A SINE B2 5 198 0 3 1254 318 294 59 0 chr4 87692905 87692990 -67937130 + PB1D9 SINE Alu 26 115 -5 3 1254 27 73 0 0 chr4 87693029 87693084 -67937036 + AT_rich Low_complexity Low_complexity 1 55 0 3 1254 797 225 118 0 chr4 87693084 87693271 -67936849 - B3 SINE B2 -7 209 1 3 1254 372 287 80 7 chr4 87693271 87693408 -67936712 - MTEa LTR MaLR -4 375 229 3 1254 244 213 129 16 chr4 87693472 87693534 -67936586 + ID4_ SINE ID 1 69 -14 3 1254 3770 55 12 62 chr4 87694159 87694678 -67935442 - MT2_Mm LTR ERVL 0 493 1 3 1254 450 237 171 34 chr4 87694859 87695034 -67935086 + B3 SINE B2 5 203 -13 3 1254 882 172 348 12 chr4 87695453 87695712 -67934408 + ORR1C2 LTR MaLR 39 384 0 3 1254 453 223 84 8 chr4 87695823 87695954 -67934166 - B1_Mur1 SINE Alu 0 149 9 3 1254 1603 189 99 15 chr4 87695966 87696369 -67933751 + RMER10A LTR ERVL 1 437 -5 3 1254 549 80 0 0 chr4 87696372 87696447 -67933673 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 3 1254 234 265 0 0 chr4 87696459 87696527 -67933593 + CT-rich Low_complexity Low_complexity 3 70 0 3 1254 284 331 22 7 chr4 87696650 87696787 -67933333 - MER31A LTR ERV1 -117 368 230 3 1254 534 258 15 0 chr4 87696967 87697099 -67933021 + B1_Mur1 SINE Alu 16 149 0 3 1254 558 237 103 7 chr4 87697541 87697677 -67932443 + B1_Mur2 SINE Alu 1 149 0 3 1254 332 60 0 39 chr4 87697678 87697730 -67932390 + (GAAAA)n Simple_repeat Simple_repeat 2 51 0 3 1254 527 267 103 72 chr4 87697943 87698274 -67931846 - RMER5 LTR ERV1 -156 378 38 3 1254 691 144 24 0 chr4 87698283 87698408 -67931712 + ORR1C1 LTR MaLR 251 378 0 3 1254 1375 214 88 20 chr4 87698616 87698959 -67931161 - ORR1D2 LTR MaLR 0 370 5 3 1254 340 282 62 39 chr4 87698960 87699089 -67931031 + RSINE1 SINE B4 5 136 -29 3 1254 378 0 0 0 chr4 87699097 87699139 -67930981 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1254 2349 81 3 30 chr4 87699139 87699471 -67930649 - ORR1A2 LTR MaLR 0 327 5 3 1254 180 0 0 0 chr4 87699471 87699491 -67930629 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1254 37345 31 12 0 chr4 87699513 87705637 -67924483 - L1Md_T LINE L1 0 6585 283 3 1254 21 57 0 0 chr4 87705643 87705678 -67924442 + AT_rich Low_complexity Low_complexity 1 35 0 3 1254 2266 151 37 56 chr4 87706029 87706457 -67923663 + MTC LTR MaLR 1 420 -1 3 1254 284 227 40 0 chr4 87706471 87706546 -67923574 + B1F SINE Alu 72 149 0 3 1254 473 152 0 132 chr4 87707419 87707466 -67922654 - PB1D9 SINE Alu -16 104 58 3 1254 2705 87 71 0 chr4 87707466 87707859 -67922261 + BGLII LTR ERVK 1 421 0 3 1254 473 152 0 132 chr4 87707859 87707925 -67922195 - PB1D9 SINE Alu -63 57 6 3 1254 251 272 126 26 chr4 87708048 87708199 -67921921 + YREP_Mm Unknown Unknown 129 294 -1518 3 1254 861 255 7 20 chr4 87708075 87708279 -67921841 - ID_B1 SINE B4 -1 223 24 3 1254 369 0 0 0 chr4 87708451 87708492 -67921628 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1254 328 252 148 9 chr4 87708516 87708624 -67921496 - ID_B1 SINE B4 -7 217 95 3 1254 267 319 11 11 chr4 87708542 87708637 -67921483 - PB1D10 SINE Alu -22 95 1 3 1254 280 203 34 0 chr4 87708758 87708817 -67921303 - ID_B1 SINE B4 0 224 164 3 1254 7913 73 0 5 chr4 87708849 87710127 -67919993 - L1_Mus1 LINE L1 -1 6566 5295 3 1254 1593 86 0 22 chr4 87710127 87710354 -67919766 - L1Md_F2 LINE L1 -13 6569 6348 3 1254 6673 97 1 16 chr4 87710354 87710704 -67919416 - L1_Mus1 LINE L1 -589 5294 4953 3 1254 1434 86 0 0 chr4 87710704 87710890 -67919230 + L1_Mus1 LINE L1 4769 4954 -929 3 1254 336 241 76 0 chr4 87710895 87710974 -67919146 - ID_B1 SINE B4 -75 149 65 3 1254 254 219 15 15 chr4 87711423 87711488 -67918632 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 3 1254 273 250 53 0 chr4 87711775 87711851 -67918269 + ID_B1 SINE B4 101 180 -44 3 1254 215 143 0 87 chr4 87711842 87711888 -67918232 - B2_Mm2 SINE B2 -153 42 1 3 1254 606 215 123 39 chr4 87712047 87712226 -67917894 + B3A SINE B2 2 195 -3 3 1254 1159 222 124 41 chr4 87712383 87712745 -67917375 + MTD LTR MaLR 16 407 -12 3 1254 1189 262 14 14 chr4 87712987 87713208 -67916912 + B4A SINE B4 3 220 -72 3 1254 180 97 0 0 chr4 87713208 87713239 -67916881 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 3 1254 1189 262 14 14 chr4 87713239 87713307 -67916813 + B4A SINE B4 221 290 -2 3 1254 613 209 0 0 chr4 87713418 87713533 -67916587 + B1_Mur4 SINE Alu 12 126 -24 3 1254 576 286 70 64 chr4 87713533 87713720 -67916400 - B3 SINE B2 -28 188 1 3 1254 33 0 0 0 chr4 87713727 87713760 -67916360 + AT_rich Low_complexity Low_complexity 1 33 0 3 1254 256 228 304 0 chr4 87713813 87713892 -67916228 + B1_Mur1 SINE Alu 27 129 -20 3 1254 321 155 0 0 chr4 87713893 87713951 -67916169 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 3 1254 370 269 77 0 chr4 87713969 87714073 -67916047 + ID_B1 SINE B4 82 193 -31 3 1254 257 349 91 0 chr4 87714073 87714101 -67916019 + B1F SINE Alu 1 144 -5 3 1254 329 348 7 41 chr4 87714585 87714732 -67915388 + B4A SINE B4 3 144 -148 3 1254 520 281 44 20 chr4 87715105 87715308 -67914812 - B3 SINE B2 -8 208 1 3 1254 408 206 10 6 chr4 87715357 87715455 -67914665 + ID_B1 SINE B4 71 163 -61 3 1254 516 235 8 8 chr4 87715467 87715587 -67914533 + PB1D7 SINE Alu 1 120 0 4 1254 487 288 41 12 chr4 87715632 87715875 -67914245 - L1M5 LINE L1 -1494 4652 4403 4 1254 1048 229 149 61 chr4 87716213 87716794 -67913326 - MT2A LTR ERVL 0 533 1 4 1254 1317 241 97 23 chr4 87717416 87717806 -67912314 - MTD LTR MaLR 0 419 1 4 1254 275 209 115 52 chr4 87717870 87717966 -67912154 - B3A SINE B2 -92 106 5 4 1254 823 145 0 22 chr4 87718775 87718909 -67911211 + B1_Mus1 SINE Alu 8 138 -10 4 1254 198 0 0 0 chr4 87718909 87718931 -67911189 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1254 255 383 37 0 chr4 87719042 87719149 -67910971 + PB1D10 SINE Alu 2 112 -5 4 1254 303 179 29 15 chr4 87719181 87719249 -67910871 + PB1D9 SINE Alu 52 120 0 4 1254 453 36 0 0 chr4 87719394 87719449 -67910671 + (GAAAA)n Simple_repeat Simple_repeat 1 55 0 4 1254 1127 185 53 10 chr4 87719454 87719661 -67910459 + B3 SINE B2 1 216 0 4 1254 368 241 184 18 chr4 87719683 87719797 -67910323 + ID_B1 SINE B4 82 214 -10 4 1254 294 29 0 0 chr4 87720061 87720096 -67910024 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 1254 408 184 31 31 chr4 87720104 87720233 -67909887 + Lx9 LINE L1 7509 7637 -7 4 1254 653 142 0 7 chr4 87720679 87720821 -67909299 + (TC)n Simple_repeat Simple_repeat 1 141 0 4 1254 239 237 17 0 chr4 87721040 87721099 -67909021 - ID SINE ID -164 60 1 4 1254 242 128 0 41 chr4 87721661 87721710 -67908410 + CT-rich Low_complexity Low_complexity 2 48 0 4 1254 630 174 18 0 chr4 87721731 87721840 -67908280 - B1_Mur2 SINE Alu -33 116 6 4 1254 769 278 5 32 chr4 87721841 87722057 -67908063 - B3 SINE B2 0 216 7 4 1254 185 241 55 18 chr4 87722096 87722151 -67907969 + L4 LINE RTE 398 454 -1575 4 1254 297 0 0 0 chr4 87722320 87722353 -67907767 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 4 1254 34 72 0 0 chr4 87723156 87723225 -67906895 + AT_rich Low_complexity Low_complexity 1 69 0 4 1254 1057 206 0 20 chr4 87723226 87723424 -67906696 - B3 SINE B2 -12 204 11 4 1254 630 191 70 49 chr4 87723439 87723582 -67906538 - B1_Mur1 SINE Alu -3 146 1 4 1254 817 261 21 16 chr4 87723603 87723794 -67906326 - B3A SINE B2 0 198 7 4 1254 259 229 69 50 chr4 87724315 87724416 -67905704 + MLT1B LTR MaLR 5 107 -283 4 1254 438 20 0 0 chr4 87724423 87724474 -67905646 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 1254 587 217 8 25 chr4 87724474 87724592 -67905528 - ID_B1 SINE B4 -9 215 100 4 1254 472 241 46 9 chr4 87724842 87724951 -67905169 - PB1D9 SINE Alu 0 120 8 4 1254 236 359 0 32 chr4 87724879 87724974 -67905146 - B4A SINE B4 -123 169 78 4 1254 2584 74 42 16 chr4 87725052 87725436 -67904684 + BGLII_Mus LTR ERVK 29 422 0 4 1254 234 226 0 19 chr4 87725528 87725582 -67904538 + PB1D9 SINE Alu 4 56 -64 4 1254 591 85 0 0 chr4 87725674 87725756 -67904364 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1254 240 271 14 0 chr4 87725840 87725910 -67904210 + ID4_ SINE ID 1 71 -12 4 1254 196 302 0 0 chr4 87725935 87725978 -67904142 - L2c LINE L2 -68 3319 3277 4 1254 710 195 62 0 chr4 87726050 87726178 -67903942 + B1_Mur4 SINE Alu 1 136 -14 4 1254 345 285 0 0 chr4 87726192 87726322 -67903798 + (CATA)n Simple_repeat Simple_repeat 2 131 0 4 1254 288 258 172 0 chr4 87726674 87726767 -67903353 - PB1D9 SINE Alu -11 109 1 4 1254 210 111 28 0 chr4 87727017 87727053 -67903067 - PB1D9 SINE Alu -1 119 83 4 1254 321 300 68 29 chr4 87727731 87727834 -67902286 + RSINE1 SINE B4 59 165 0 4 1254 499 201 0 14 chr4 87727837 87727978 -67902142 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 1254 334 244 63 13 chr4 87728063 87728142 -67901978 + ID_B1 SINE B4 93 175 -49 4 1254 225 0 0 0 chr4 87728438 87728463 -67901657 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1254 5293 27 3 0 chr4 87728601 87729184 -67900936 + L1Md_F3 LINE L1 5999 6583 -1 4 1254 270 0 0 0 chr4 87729345 87729375 -67900745 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1254 348 352 39 83 chr4 87729436 87729690 -67900430 + LTR33 LTR ERVL 23 265 -250 4 1254 235 244 49 49 chr4 87729819 87729901 -67900219 - MLT1L LTR MaLR -451 159 78 4 1254 766 281 138 82 chr4 87730823 87731255 -67898865 + Cheshire DNA MER1_type 426 886 -1534 4 1254 780 268 26 5 chr4 87731255 87731446 -67898674 + B3A SINE B2 2 196 -2 4 1254 766 281 138 82 chr4 87731446 87731528 -67898592 + Cheshire DNA MER1_type 887 968 -1452 4 1254 719 252 7 26 chr4 87731550 87731701 -67898419 + RSINE1 SINE B4 2 149 -16 4 1254 778 274 55 17 chr4 87731874 87732112 -67898008 - Lx8 LINE L1 -10 7463 7217 4 1254 595 246 42 14 chr4 87732348 87732492 -67897628 - B1_Mur1 SINE Alu 0 149 2 4 1254 1350 244 49 3 chr4 87732492 87732842 -67897278 + Cheshire DNA MER1_type 1504 1869 -551 4 1254 1202 268 88 126 chr4 87732844 87733117 -67897003 + L1M3 LINE L1 4480 4760 -1380 4 1254 282 254 14 82 chr4 87733117 87733190 -67896930 + ID4 SINE ID 16 83 0 4 1254 1202 268 88 126 chr4 87733190 87733313 -67896807 + L1M3 LINE L1 4761 4888 -1252 4 1254 3281 65 0 19 chr4 87733313 87733736 -67896384 - L1Md_F2 LINE L1 0 6582 6168 4 1254 1202 268 88 126 chr4 87733736 87734141 -67895979 + L1M3 LINE L1 4889 5321 -819 4 1254 342 309 9 18 chr4 87734170 87734282 -67895838 + ID_B1 SINE B4 106 216 -8 4 1254 384 291 83 46 chr4 87734704 87734920 -67895200 + RMER15 LTR ERVL 347 570 -5 4 1254 417 210 134 0 chr4 87734920 87735039 -67895081 + L1M3 LINE L1 5646 5780 -532 4 1254 447 238 0 0 chr4 87735066 87735146 -67894974 - ID2 SINE ID 0 83 4 4 1254 377 0 42 0 chr4 87735191 87735239 -67894881 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 1254 318 286 9 45 chr4 87735239 87735349 -67894771 - PB1D10 SINE Alu -10 107 2 4 1254 537 236 0 18 chr4 87735524 87735636 -67894484 - Lx8 LINE L1 -1119 6354 6245 4 1254 432 0 0 0 chr4 87735637 87735685 -67894435 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1254 406 200 62 26 chr4 87736159 87736272 -67893848 + LTR33 LTR ERVL 395 511 -4 4 1254 284 296 21 85 chr4 87736275 87736552 -67893568 - L2a LINE L2 -271 3155 2848 4 1254 230 229 0 0 chr4 87736835 87736883 -67893237 + CT-rich Low_complexity Low_complexity 3 50 0 4 1254 491 295 62 0 chr4 87737075 87737204 -67892916 + RSINE1 SINE B4 4 140 -25 4 1254 1763 110 62 71 chr4 87737584 87737908 -67892212 + ORR1A4 LTR MaLR 1 321 -8 4 1254 864 132 101 22 chr4 87738095 87738234 -67891886 - B1_Mur4 SINE Alu 0 150 1 4 1254 384 227 16 127 chr4 87738242 87738286 -67891834 + MLT1A0 LTR MaLR 32 72 -293 4 1254 441 164 30 0 chr4 87738286 87738353 -67891767 + ID4 SINE ID 4 72 -11 4 1254 384 237 16 124 chr4 87738353 87738452 -67891668 + MLT1A0 LTR MaLR 73 162 -246 4 1254 348 299 34 0 chr4 87738458 87738575 -67891545 + B1F SINE Alu 24 144 -5 4 1254 453 323 68 26 chr4 87738725 87738916 -67891204 + MLT1A0 LTR MaLR 165 363 -2 4 1254 242 300 125 13 chr4 87739013 87739165 -67890955 + MIR SINE MIR 77 245 -17 4 1254 628 168 30 154 chr4 87739199 87739368 -67890752 + B1_Mur2 SINE Alu 1 148 -1 4 1254 237 289 128 32 chr4 87739664 87739789 -67890331 + MER5B DNA MER1_type 22 158 -20 4 1254 252 0 0 0 chr4 87741439 87741467 -67888653 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1254 216 0 0 0 chr4 87741477 87741501 -67888619 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1254 22 70 0 0 chr4 87742048 87742091 -67888029 + AT_rich Low_complexity Low_complexity 1 43 0 4 1254 377 317 33 8 chr4 87742785 87742906 -67887214 - ID_B1 SINE B4 -57 167 44 4 1254 381 43 0 0 chr4 87742916 87742963 -67887157 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1254 754 301 24 6 chr4 87742963 87743127 -67886993 - B3A SINE B2 -27 171 5 4 1254 280 305 24 0 chr4 87743149 87743231 -67886889 - Tigger5 DNA MER2_type 0 2406 2323 4 1254 494 210 30 0 chr4 87743249 87743349 -67886771 + B1_Mur1 SINE Alu 34 136 -13 4 1254 655 336 84 19 chr4 87743348 87743609 -67886511 + B4A SINE B4 14 291 -1 4 1254 225 0 0 0 chr4 87743636 87743661 -67886459 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1254 737 319 21 57 chr4 87743694 87743976 -67886144 + B4 SINE B4 21 292 0 4 1254 721 280 44 72 chr4 87744066 87744316 -67885804 - Tigger5 DNA MER2_type -2163 243 2 4 1254 288 330 19 19 chr4 87744355 87744463 -67885657 + PB1 SINE Alu 3 110 -17 4 1254 462 218 35 0 chr4 87744591 87744678 -67885442 - PB1D9 SINE Alu -5 115 26 4 1254 418 189 69 67 chr4 87744916 87745043 -67885077 + B1_Mur4 SINE Alu 23 147 0 4 1254 296 267 44 71 chr4 87745265 87745292 -67884828 - B4A SINE B4 -180 112 3 4 1254 499 174 47 0 chr4 87745292 87745378 -67884742 - B3A SINE B2 -106 92 3 4 1254 1114 226 9 14 chr4 87745420 87745635 -67884485 - B3 SINE B2 -1 215 2 4 1254 456 214 11 11 chr4 87746176 87746266 -67883854 + B4A SINE B4 4 93 -199 4 1254 388 287 0 65 chr4 87746283 87746391 -67883729 + B4A SINE B4 192 292 0 4 1254 480 291 63 0 chr4 87746731 87746858 -67883262 - RSINE1 SINE B4 -28 137 3 4 1254 321 100 0 0 chr4 87746974 87747024 -67883096 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1254 687 227 62 34 chr4 87747024 87747193 -67882927 - ORR1D2 LTR MaLR -8 362 189 4 1254 620 266 122 0 chr4 87747231 87747370 -67882750 + B3A SINE B2 2 157 -41 4 1254 378 0 0 0 chr4 87747382 87747424 -67882696 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1254 223 300 0 0 chr4 87747556 87747606 -67882514 + polypyrimidine Low_complexity Low_complexity 5 54 0 4 1254 514 226 0 0 chr4 87747684 87747777 -67882343 - PB1D7 SINE Alu -8 112 20 4 1254 297 338 110 34 chr4 87747987 87748223 -67881897 + L2a LINE L2 2937 3190 -236 4 1254 21 36 0 0 chr4 87748565 87748593 -67881527 + AT_rich Low_complexity Low_complexity 1 28 0 5 1254 696 251 86 10 chr4 87748829 87749026 -67881094 + ID_B1 SINE B4 2 213 -11 5 1254 218 200 0 0 chr4 87749027 87749067 -67881053 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 5 1254 224 30 30 0 chr4 87749068 87749101 -67881019 + (CAA)n Simple_repeat Simple_repeat 3 36 0 5 1254 213 121 0 0 chr4 87749533 87749566 -67880554 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1254 5047 220 91 29 chr4 87749620 87749814 -67880306 - Lx6 LINE L1 -478 6982 6761 5 1254 1030 125 6 6 chr4 87749814 87749991 -67880129 + (TTC)n Simple_repeat Simple_repeat 1 177 0 5 1254 5047 203 88 33 chr4 87749991 87751196 -67878924 - Lx6 LINE L1 -700 6760 5498 5 1254 320 323 10 20 chr4 87751475 87751576 -67878544 - ID_B1 SINE B4 -124 100 1 5 1254 30 0 0 0 chr4 87751624 87751654 -67878466 + AT_rich Low_complexity Low_complexity 1 30 0 5 1254 357 329 117 27 chr4 87751665 87751996 -67878124 + L2a LINE L2 2783 3158 -268 5 1254 751 181 84 67 chr4 87752031 87752209 -67877911 - B3A SINE B2 -16 182 2 5 1254 249 211 182 13 chr4 87752904 87752981 -67877139 - B4 SINE B4 0 292 203 5 1254 810 234 49 106 chr4 87752990 87753345 -67876775 - Lx5 LINE L1 -685 6365 6007 5 1254 1651 153 45 23 chr4 87753343 87753651 -67876469 + Lx5 LINE L1 5678 5992 -1058 5 1254 538 172 164 0 chr4 87753777 87753899 -67876221 + B1_Mur1 SINE Alu 6 147 -2 5 1254 486 260 30 30 chr4 87753939 87754024 -67876096 + 7SK RNA RNA 2 87 -244 5 1254 546 16 0 0 chr4 87754024 87754087 -67876033 + (TGG)n Simple_repeat Simple_repeat 2 64 0 5 1254 486 260 30 30 chr4 87754087 87754132 -67875988 + 7SK RNA RNA 88 132 -199 5 1254 249 290 87 0 chr4 87754172 87754241 -67875879 + ID4_ SINE ID 2 76 -7 5 1254 401 319 93 71 chr4 87755181 87755363 -67874757 + B4A SINE B4 104 289 -3 5 1254 195 194 145 0 chr4 87755523 87755585 -67874535 - L2c LINE L2 -7 3380 3310 5 1254 632 230 28 14 chr4 87756157 87756298 -67873822 + B1_Mur1 SINE Alu 2 144 -5 5 1254 318 106 0 0 chr4 87756319 87756366 -67873754 + (CAA)n Simple_repeat Simple_repeat 1 47 0 5 1254 315 151 38 0 chr4 87756738 87756791 -67873329 - B3A SINE B2 -85 113 59 5 1254 604 261 0 27 chr4 87757465 87757611 -67872509 - B1F2 SINE Alu -6 143 2 5 1254 493 230 63 113 chr4 87757631 87757773 -67872347 - ID_B1 SINE B4 -4 220 86 5 1254 786 220 0 0 chr4 87757809 87757941 -67872179 - B1_Mur2 SINE Alu -17 132 1 5 1254 483 248 42 17 chr4 87758024 87758143 -67871977 + PB1 SINE Alu 3 124 -3 5 1254 1117 95 88 16 chr4 87758367 87758560 -67871560 - Lx2 LINE L1 0 6997 6791 5 1254 467 176 0 0 chr4 87758573 87758647 -67871473 - PB1D10 SINE Alu -8 109 36 5 1254 2806 75 0 11 chr4 87758710 87759060 -67871060 - L1_Mus2 LINE L1 -1 6565 6220 5 1254 3103 91 169 2 chr4 87759266 87759705 -67870415 + RLTR1B LTR ERV1 1 512 0 5 1254 270 266 114 0 chr4 87760134 87760213 -67869907 - PB1 SINE Alu -13 114 27 5 1254 321 214 181 35 chr4 87760228 87760344 -67869776 - B1_Mus1 SINE Alu -3 145 13 5 1254 457 259 46 0 chr4 87760241 87760349 -67869771 - ID_B1 SINE B4 -25 199 87 5 1254 183 139 0 0 chr4 87760581 87760617 -67869503 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1254 750 240 169 5 chr4 87760736 87760920 -67869200 + ID_B1 SINE B4 2 215 -9 5 1254 925 252 116 19 chr4 87761540 87761807 -67868313 + Tigger7 DNA MER2_type 1 293 -2198 5 1254 215 375 114 36 chr4 87763434 87763766 -67866354 + L4 LINE RTE 1422 1779 -250 5 1254 689 272 5 62 chr4 87763943 87764151 -67865969 - B3A SINE B2 0 198 3 5 1254 25 0 0 0 chr4 87765268 87765293 -67864827 + AT_rich Low_complexity Low_complexity 1 25 0 5 1254 287 25 25 0 chr4 87765293 87765333 -67864787 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1254 212 152 0 0 chr4 87765333 87765366 -67864754 - RSINE1 SINE B4 -41 124 92 5 1254 566 171 0 139 chr4 87765360 87765482 -67864638 - B1F2 SINE Alu -4 145 41 5 1254 489 229 67 0 chr4 87765484 87765589 -67864531 - B1_Mur1 SINE Alu -36 113 2 5 1254 308 333 94 26 chr4 87765488 87765605 -67864515 - B4 SINE B4 -94 198 74 5 1254 22 0 0 0 chr4 87765605 87765627 -67864493 + AT_rich Low_complexity Low_complexity 1 22 0 5 1254 200 277 114 38 chr4 87765636 87765741 -67864379 + L2a LINE L2 3310 3422 -4 5 1254 407 129 157 45 chr4 87766253 87766342 -67863778 - B1_Mur1 SINE Alu 0 149 51 5 1254 361 273 28 56 chr4 87766633 87766823 -67863297 - B3 SINE B2 -9 186 2 5 1254 327 267 65 26 chr4 87768659 87768813 -67861307 + Kanga1a DNA Tc2 588 747 -7 5 1254 280 306 85 90 chr4 87769396 87769555 -67860565 + B3 SINE B2 2 163 -53 5 1254 1140 101 0 0 chr4 87769555 87769733 -67860387 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1254 678 249 11 75 chr4 87769733 87769747 -67860373 + RSINE1 SINE B4 154 165 0 5 1254 1137 98 0 0 chr4 87769755 87769929 -67860191 + (CA)n Simple_repeat Simple_repeat 1 174 0 5 1254 280 306 85 90 chr4 87769929 87769947 -67860173 + B3 SINE B2 185 200 -16 5 1254 211 289 108 0 chr4 87770269 87770352 -67859768 + MIR SINE MIR 157 248 -14 5 1254 190 0 32 32 chr4 87770580 87770611 -67859509 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 1254 1640 221 81 3 chr4 87770631 87771003 -67859117 + MTD LTR MaLR 5 405 -14 5 1254 248 250 0 61 chr4 87771140 87771238 -67858882 + CT-rich Low_complexity Low_complexity 5 96 0 5 1254 571 297 12 31 chr4 87771753 87771913 -67858207 - RSINE1 SINE B4 0 165 9 5 1254 1177 66 137 12 chr4 87771940 87772108 -67858012 - B2_Mm1t SINE B2 -3 190 2 5 1254 264 175 30 38 chr4 87772743 87772874 -67857246 + (GTGTG)n Simple_repeat Simple_repeat 1 130 0 5 1254 245 172 51 32 chr4 87772943 87773099 -67857021 + (TG)n Simple_repeat Simple_repeat 1 159 0 5 1254 214 184 63 38 chr4 87773124 87773203 -67856917 + (GTGTG)n Simple_repeat Simple_repeat 4 84 0 5 1254 248 168 39 29 chr4 87773204 87773308 -67856812 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1254 482 251 65 45 chr4 87773365 87773595 -67856525 - B4A SINE B4 -8 284 2 5 1254 418 221 0 55 chr4 87773723 87773814 -67856306 - B3A SINE B2 -109 89 4 5 1254 1259 48 0 0 chr4 87775165 87775312 -67854808 + B1_Mm SINE Alu 1 147 0 5 1254 240 130 0 0 chr4 87775312 87775358 -67854762 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1254 337 307 0 0 chr4 87776092 87776229 -67853891 + (CTG)n Simple_repeat Simple_repeat 1 137 0 5 1254 36 40 0 0 chr4 87776404 87776454 -67853666 + AT_rich Low_complexity Low_complexity 1 50 0 5 1254 1443 84 21 16 chr4 87776866 87777060 -67853060 - B2_Mm2 SINE B2 0 195 1 5 1254 675 71 0 0 chr4 87777077 87777175 -67852945 + (CA)n Simple_repeat Simple_repeat 2 99 0 5 1254 236 267 133 0 chr4 87777476 87777551 -67852569 + RSINE1 SINE B4 81 165 0 5 1254 745 175 298 6 chr4 87777635 87777796 -67852324 + B3 SINE B2 2 209 -7 5 1254 230 260 0 0 chr4 87778286 87778336 -67851784 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 5 1254 717 245 104 0 chr4 87778337 87778500 -67851620 - B3 SINE B2 -36 180 1 5 1254 2076 291 103 83 chr4 87778729 87779979 -67850141 - Lx8 LINE L1 -2 7471 6197 5 1254 290 79 63 0 chr4 87779981 87780044 -67850076 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1254 387 60 0 0 chr4 87780046 87780096 -67850024 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1254 416 158 78 19 chr4 87780614 87780717 -67849403 - MTEa LTR MaLR -1 378 270 5 1254 609 255 45 125 chr4 87780829 87781053 -67849067 - B4 SINE B4 -72 220 15 5 1254 345 286 21 0 chr4 87781068 87781184 -67848936 - PB1 SINE Alu 0 127 10 5 1254 195 260 31 0 chr4 87784582 87784678 -67845442 + CT-rich Low_complexity Low_complexity 2 100 0 5 1254 614 241 69 28 chr4 87784708 87784853 -67845267 - ID_B1 SINE B4 -20 204 54 5 1254 528 16 0 0 chr4 87784871 87784932 -67845188 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 5 1254 204 191 0 73 chr4 87785952 87786020 -67844100 + A-rich Low_complexity Low_complexity 2 64 0 5 1254 358 276 91 24 chr4 87786186 87786394 -67843726 - L1MC5 LINE L1 -722 7239 7018 5 1254 217 192 17 103 chr4 87786394 87786452 -67843668 + B3A SINE B2 5 57 -141 5 1254 18540 68 3 11 chr4 87786452 87789405 -67840715 - L1Md_F2 LINE L1 -164 6418 3488 5 1254 1411 66 0 0 chr4 87789403 87789584 -67840536 - L1Md_F LINE L1 -6040 479 299 5 1254 3584 117 86 0 chr4 87789585 87790131 -67839989 - L1Md_F2 LINE L1 -5492 1124 532 5 1254 1601 42 5 30 chr4 87790301 87790498 -67839622 - B2_Mm1t SINE B2 0 193 2 5 1254 460 220 9 60 chr4 87790956 87791072 -67839048 - PB1D9 SINE Alu 0 120 11 5 1254 256 278 105 76 chr4 87790987 87791092 -67839028 - MT2B LTR ERVL -339 262 155 5 1254 212 346 46 69 chr4 87791403 87791577 -67838543 - L2b LINE L2 -201 3186 3017 5 1254 472 162 0 13 chr4 87791992 87792067 -67838053 + URR1A DNA MER1_type 1 74 -152 5 1254 1277 191 27 0 chr4 87792063 87792288 -67837832 - ORR1A2 LTR MaLR -96 231 1 5 1254 1431 72 39 0 chr4 87793983 87794164 -67835956 + B2_Mm2 SINE B2 1 188 -7 5 1254 1144 145 0 0 chr4 87794815 87794987 -67835133 + B2_Mm2 SINE B2 3 174 -21 5 1254 476 85 396 0 chr4 87795033 87795139 -67834981 + B2_Mm2 SINE B2 48 195 0 5 1254 555 180 11 44 chr4 87795868 87795949 -67834171 + T-rich Low_complexity Low_complexity 104 177 0 5 1254 1028 102 6 22 chr4 87795949 87796130 -67833990 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1254 555 180 11 44 chr4 87796130 87796228 -67833892 + T-rich Low_complexity Low_complexity 5 103 0 6 1254 941 150 0 17 chr4 87796247 87796423 -67833697 + CT-rich Low_complexity Low_complexity 1 173 0 6 1254 233 233 32 48 chr4 87797028 87797091 -67833029 - ID4 SINE ID -21 62 1 6 1254 301 220 0 0 chr4 87798172 87798222 -67831898 - HAL1 LINE L1 -835 2023 1974 6 1254 518 183 9 0 chr4 87798225 87798340 -67831780 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 1254 240 251 245 122 chr4 87798374 87798610 -67831510 - B4 SINE B4 -2 290 26 6 1254 676 207 168 18 chr4 87798908 87799075 -67831045 + B3A SINE B2 1 192 -6 6 1254 361 186 34 42 chr4 87799075 87799193 -67830927 - MER33 DNA MER1_type -43 281 165 6 1254 936 163 7 7 chr4 87799217 87799365 -67830755 - B1_Mur3 SINE Alu -1 148 1 6 1254 543 221 13 97 chr4 87799386 87799541 -67830579 - B3 SINE B2 -8 208 67 6 1254 227 316 0 0 chr4 87799780 87799837 -67830283 + MIR SINE MIR 198 254 -8 6 1254 314 299 70 58 chr4 87799875 87800134 -67829986 - HAL1 LINE L1 -1428 1079 818 6 1254 233 312 37 61 chr4 87800379 87800461 -67829659 + ID4_ SINE ID 2 81 -2 6 1254 236 254 0 0 chr4 87800699 87800758 -67829362 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1254 513 310 45 6 chr4 87800771 87800927 -67829193 - RSINE1 SINE B4 0 165 4 6 1254 180 111 0 0 chr4 87801174 87801201 -67828919 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1254 222 152 22 0 chr4 87802070 87802116 -67828004 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 1254 556 176 0 0 chr4 87802116 87802207 -67827913 - PB1D9 SINE Alu -29 91 1 6 1254 200 246 45 15 chr4 87802268 87802334 -67827786 + CT-rich Low_complexity Low_complexity 3 70 0 6 1254 597 261 44 11 chr4 87802590 87802772 -67827348 - L1MB8 LINE L1 -5 6173 5986 6 1254 229 216 0 19 chr4 87802790 87802842 -67827278 - MER5B DNA MER1_type -3 175 125 6 1254 231 182 161 18 chr4 87803000 87803056 -67827064 - MER5A1 DNA MER1_type -72 94 31 6 1254 252 274 58 66 chr4 87803069 87803206 -67826914 + MER5A1 DNA MER1_type 28 163 -3 6 1254 457 295 80 35 chr4 87805202 87805402 -67824718 - MER102b DNA MER1_type -129 212 4 6 1254 312 27 0 0 chr4 87806157 87806194 -67823926 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1254 681 237 29 7 chr4 87807141 87807277 -67822843 - B1_Mur1 SINE Alu 0 149 11 6 1254 387 0 0 0 chr4 87807280 87807323 -67822797 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 6 1254 331 196 206 0 chr4 87807345 87807447 -67822673 - PB1 SINE Alu -4 123 1 6 1254 941 241 158 11 chr4 87807477 87807629 -67822491 - L1MB7 LINE L1 -16 6168 6007 6 1254 3043 41 3 3 chr4 87807629 87807975 -67822145 + ORR1A1 LTR MaLR 1 346 0 6 1254 941 248 150 15 chr4 87807975 87808231 -67821889 - L1MB7 LINE L1 -178 6006 5709 6 1254 180 0 0 0 chr4 87810149 87810169 -67819951 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1254 193 286 48 0 chr4 87810813 87810876 -67819244 - MIR3 SINE MIR -48 160 95 6 1254 537 224 241 13 chr4 87810917 87811075 -67819045 + ID_B1 SINE B4 10 203 -21 6 1254 225 0 0 0 chr4 87811081 87811106 -67819014 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1254 330 299 96 14 chr4 87811434 87811580 -67818540 - MTE2a LTR MaLR -52 327 170 6 1254 370 122 13 26 chr4 87811586 87811662 -67818458 + CT-rich Low_complexity Low_complexity 1 75 0 6 1254 354 323 46 0 chr4 87812183 87812313 -67817807 + MER20 DNA MER1_type 2 137 -82 6 1254 660 188 38 22 chr4 87813170 87813354 -67816766 - B3 SINE B2 -1 192 6 6 1254 263 341 109 11 chr4 87813944 87814036 -67816084 - MER5B DNA MER1_type -22 156 56 6 1254 254 227 95 74 chr4 87814073 87814168 -67815952 - MER5A DNA MER1_type -89 100 4 6 1254 406 310 89 63 chr4 87814258 87814527 -67815593 + B4 SINE B4 4 279 -13 6 1254 183 156 0 0 chr4 87814537 87814569 -67815551 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 6 1254 280 239 27 53 chr4 87814614 87814689 -67815431 + ID4 SINE ID 5 77 -6 6 1254 527 273 18 0 chr4 87814721 87814831 -67815289 + RSINE1 SINE B4 33 144 -21 6 1254 22 0 0 0 chr4 87814848 87814870 -67815250 + AT_rich Low_complexity Low_complexity 1 22 0 6 1254 805 247 80 5 chr4 87815206 87815405 -67814715 + B3 SINE B2 2 215 -1 6 1254 532 291 37 0 chr4 87816674 87816808 -67813312 - B1_Mur1 SINE Alu -9 140 2 6 1255 653 92 10 0 chr4 87818336 87818434 -67811686 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 6 1255 600 302 57 22 chr4 87818655 87818882 -67811238 - Tigger7 DNA MER2_type -2021 470 236 6 1255 799 105 162 50 chr4 87818897 87818976 -67811144 - URR1A DNA MER1_type -1 225 144 6 1255 1037 102 0 6 chr4 87818976 87819134 -67810986 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 6 1255 1085 111 7 0 chr4 87819134 87819278 -67810842 - B1_Mus1 SINE Alu -3 145 1 6 1255 799 105 162 50 chr4 87819278 87819357 -67810763 - URR1A DNA MER1_type -83 143 49 6 1255 550 37 24 35 chr4 87819443 87819528 -67810592 + (GGAAA)n Simple_repeat Simple_repeat 1 84 0 6 1255 472 286 40 0 chr4 87819584 87819710 -67810410 - Tigger7 DNA MER2_type -2344 147 17 6 1255 1532 251 117 29 chr4 87819988 87820468 -67809652 + RMER5 LTR ERV1 13 534 0 6 1255 4261 44 0 32 chr4 87823435 87823933 -67806187 - LTRIS_Mm LTR ERV1 0 482 1 6 1255 316 306 123 8 chr4 87824547 87824669 -67805451 + B1F SINE Alu 13 148 -1 6 1255 776 206 13 27 chr4 87824673 87824823 -67805297 + B1_Mur2 SINE Alu 1 148 -1 6 1255 225 0 0 0 chr4 87824862 87824887 -67805233 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1255 587 250 93 20 chr4 87826239 87826443 -67803677 + Lx8 LINE L1 7253 7471 -2 6 1255 1736 204 44 18 chr4 87826642 87827125 -67802995 - Lx2B LINE L1 -2 6998 6441 6 1255 180 111 0 0 chr4 87827140 87827167 -67802953 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1255 593 212 42 0 chr4 87828990 87829108 -67801012 + RSINE1 SINE B4 6 128 -37 6 1255 896 207 16 32 chr4 87829869 87830054 -67800066 + B3 SINE B2 25 206 -10 6 1255 255 321 103 15 chr4 87830091 87830227 -67799893 - RSINE1 SINE B4 -14 151 4 6 1255 573 15 0 0 chr4 87832320 87832386 -67797734 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 6 1255 300 53 0 0 chr4 87832397 87832435 -67797685 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 1255 459 221 132 9 chr4 87832457 87832571 -67797549 - B3A SINE B2 -51 147 20 6 1255 23 0 0 0 chr4 87832942 87832965 -67797155 + AT_rich Low_complexity Low_complexity 1 23 0 6 1255 671 276 0 69 chr4 87832982 87833157 -67796963 - RSINE1 SINE B4 0 165 3 6 1255 202 200 0 0 chr4 87834228 87834273 -67795847 + G-rich Low_complexity Low_complexity 1 45 0 6 1255 3154 49 5 5 chr4 87835007 87835399 -67794721 - MTA_Mm LTR MaLR 0 396 5 6 1255 220 39 0 0 chr4 87836147 87836173 -67793947 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1255 507 73 0 0 chr4 87836173 87836241 -67793879 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 6 1255 355 310 119 63 chr4 87836502 87836771 -67793349 - L1MB8 LINE L1 -3 6175 5892 6 1255 709 185 34 0 chr4 87836787 87836906 -67793214 - B1_Mur4 SINE Alu -14 136 14 6 1255 386 316 68 11 chr4 87836911 87837087 -67793033 - L1MB8 LINE L1 -373 5801 5616 6 1255 33 35 0 17 chr4 87837089 87837102 -67793018 + AT_rich Low_complexity Low_complexity 1 13 0 6 1255 1442 78 0 0 chr4 87837102 87837294 -67792826 - L1_Mus1 LINE L1 0 6567 6376 6 1255 33 35 0 17 chr4 87837294 87837338 -67792782 + AT_rich Low_complexity Low_complexity 1 44 0 6 1255 2652 68 4 145 chr4 87837364 87837826 -67792294 - L1Md_T LINE L1 -2 6580 6184 6 1255 2180 78 15 15 chr4 87837826 87838153 -67791967 + L1_Mus1 LINE L1 5833 6159 -408 6 1255 282 283 28 0 chr4 87838186 87838292 -67791828 - L1MB8 LINE L1 -636 5548 5440 6 1255 993 113 0 0 chr4 87838572 87838722 -67791398 + (TCCC)n Simple_repeat Simple_repeat 2 151 0 6 1255 1645 74 30 0 chr4 87838869 87839100 -67791020 - L1_Mus3 LINE L1 -1 6637 6400 6 1255 429 151 151 66 chr4 87839215 87839336 -67790784 - B1_Mur4 SINE Alu 0 150 15 6 1255 56 61 0 0 chr4 87839502 87839600 -67790520 + AT_rich Low_complexity Low_complexity 1 98 0 6 1255 301 322 88 50 chr4 87839663 87839714 -67790406 - B3 SINE B2 -4 212 166 6 1255 261 0 0 0 chr4 87839714 87839743 -67790377 + (TATG)n Simple_repeat Simple_repeat 2 30 0 6 1255 301 322 88 50 chr4 87839743 87839851 -67790269 - B3 SINE B2 -51 165 47 6 1255 258 274 239 0 chr4 87839930 87840047 -67790073 - B1_Mur1 SINE Alu -3 146 2 6 1255 243 88 0 0 chr4 87840049 87840083 -67790037 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 6 1255 208 233 0 0 chr4 87841090 87841133 -67788987 + (CAATA)n Simple_repeat Simple_repeat 5 47 0 6 1255 395 261 106 50 chr4 87841424 87841776 -67788344 + L1MB7 LINE L1 5759 6131 -43 6 1255 196 279 132 52 chr4 87843252 87843388 -67786732 - L2b LINE L2 -2 3373 3227 6 1255 371 56 19 0 chr4 87843907 87843961 -67786159 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1255 211 279 0 0 chr4 87844811 87844854 -67785266 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1255 1919 291 99 20 chr4 87845035 87845735 -67784385 - Lx8 LINE L1 -284 7189 6435 6 1255 2873 38 0 6 chr4 87847406 87847754 -67782366 - ORR1A1 LTR MaLR 0 346 1 6 1255 1008 244 5 5 chr4 87848179 87848385 -67781735 + B3 SINE B2 1 206 -10 6 1255 369 267 103 8 chr4 87848579 87848696 -67781424 - B1F SINE Alu 0 149 22 6 1255 1024 281 59 20 chr4 87849541 87849897 -67780223 - ORR1D2 LTR MaLR 0 370 1 6 1255 22 0 0 0 chr4 87850326 87850348 -67779772 + AT_rich Low_complexity Low_complexity 1 22 0 6 1255 270 340 65 20 chr4 87854058 87854259 -67775861 - L2c LINE L2 0 3387 3178 6 1255 411 38 0 0 chr4 87855048 87855101 -67775019 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1255 287 323 10 51 chr4 87855107 87855205 -67774915 + LTR78 LTR ERV1 446 539 -765 7 1255 186 211 26 0 chr4 87855229 87855267 -67774853 + L3 LINE CR1 3498 3536 -953 7 1255 22 0 0 0 chr4 87858084 87858106 -67772014 + GC_rich Low_complexity Low_complexity 1 22 0 7 1255 224 72 53 18 chr4 87858285 87858342 -67771778 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1255 204 97 0 0 chr4 87858867 87858898 -67771222 + (TATG)n Simple_repeat Simple_repeat 4 34 0 7 1255 455 261 71 18 chr4 87858902 87859015 -67771105 - RSINE1 SINE B4 -30 135 17 7 1255 854 309 30 27 chr4 87859110 87859373 -67770747 + B4A SINE B4 27 290 -2 7 1255 318 260 71 77 chr4 87859408 87859495 -67770625 - MER33 DNA MER1_type -81 243 153 7 1255 1011 79 0 48 chr4 87859495 87859641 -67770479 + B1_Mus1 SINE Alu 2 140 -8 7 1255 306 0 0 0 chr4 87859641 87859675 -67770445 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1255 318 260 71 77 chr4 87859675 87859782 -67770338 - MER33 DNA MER1_type -172 152 50 7 1255 1035 258 55 22 chr4 87859796 87860069 -67770051 - RMER15 LTR ERVL 0 575 294 7 1255 222 286 0 31 chr4 87860420 87860480 -67769640 - B1_Mur4 SINE Alu 0 150 93 7 1255 476 342 142 38 chr4 87860480 87860953 -67769167 - MT2A LTR ERVL 0 533 12 7 1255 513 44 0 0 chr4 87861135 87861203 -67768917 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1255 2855 109 5 2 chr4 87861531 87861937 -67768183 - MTB_Mm LTR MaLR 0 407 1 7 1255 225 302 32 0 chr4 87862167 87862230 -67767890 - B1F SINE Alu -81 68 4 7 1255 364 345 36 0 chr4 87862771 87862910 -67767210 - B4 SINE B4 -86 206 63 7 1255 357 62 0 0 chr4 87863147 87863195 -67766925 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1255 386 138 25 0 chr4 87863248 87863328 -67766792 + (TCTG)n Simple_repeat Simple_repeat 3 84 0 7 1255 181 83 27 27 chr4 87863328 87863353 -67766767 + (TATG)n Simple_repeat Simple_repeat 2 27 0 7 1255 216 111 0 0 chr4 87863353 87863389 -67766731 + (CCTA)n Simple_repeat Simple_repeat 4 39 0 7 1255 181 83 27 27 chr4 87863389 87863400 -67766720 + (TATG)n Simple_repeat Simple_repeat 3 13 0 7 1255 555 318 84 33 chr4 87863646 87863919 -67766201 - B4A SINE B4 -5 287 1 7 1255 289 234 83 21 chr4 87864512 87864608 -67765512 + ORR1E LTR MaLR 246 347 -12 7 1255 390 57 0 0 chr4 87865887 87865940 -67764180 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1255 325 221 0 14 chr4 87866728 87866797 -67763323 - B3 SINE B2 -5 211 144 7 1255 964 233 147 20 chr4 87866839 87867145 -67762975 - RLTR15 LTR ERVK -7 352 8 7 1255 955 147 15 92 chr4 87867200 87867395 -67762725 + URR1A DNA MER1_type 46 225 -1 7 1255 300 27 0 0 chr4 87867685 87867722 -67762398 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1255 284 367 43 32 chr4 87867724 87867817 -67762303 - PB1 SINE Alu -33 94 1 7 1255 862 189 109 16 chr4 87867821 87868014 -67762106 - B3 SINE B2 -5 211 1 7 1255 461 275 36 0 chr4 87869385 87869523 -67760597 - B1_Mur2 SINE Alu -5 144 2 7 1255 24 0 0 0 chr4 87869652 87869676 -67760444 + AT_rich Low_complexity Low_complexity 1 24 0 7 1255 530 294 103 56 chr4 87869683 87870166 -67759954 - L1MB1 LINE L1 -70 6098 5593 7 1255 392 324 110 50 chr4 87870276 87870659 -67759461 - L1M4c LINE L1 -3886 2498 2093 7 1255 601 275 22 0 chr4 87870757 87870895 -67759225 + RSINE1 SINE B4 3 143 -22 7 1255 346 298 28 42 chr4 87870984 87871201 -67758919 - L1M4c LINE L1 -4563 1821 1608 7 1255 238 232 28 28 chr4 87871259 87871330 -67758790 - L1M2 LINE L1 -4393 2456 2386 7 1255 489 229 157 0 chr4 87871807 87871979 -67758141 - Lx4B LINE L1 -17 7041 6752 7 1255 283 322 40 59 chr4 87872853 87873005 -67757115 - B1F1 SINE Alu 0 149 1 7 1255 21 0 0 0 chr4 87873038 87873059 -67757061 + AT_rich Low_complexity Low_complexity 1 21 0 7 1255 2567 100 13 0 chr4 87873059 87873448 -67756672 + L1_Mm LINE L1 4920 5313 -570 7 1255 2537 268 118 19 chr4 87873452 87874104 -67756016 - Lx9 LINE L1 -5 7639 6944 7 1255 453 19 0 0 chr4 87874104 87874158 -67755962 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 1255 2537 268 118 19 chr4 87874158 87874543 -67755577 - Lx9 LINE L1 -701 6943 6500 7 1255 271 217 0 14 chr4 87874593 87874663 -67755457 - L1MB8 LINE L1 -31 6147 6079 7 1255 445 276 0 28 chr4 87876783 87876891 -67753229 - PB1D10 SINE Alu -1 116 12 7 1255 1321 192 8 15 chr4 87877658 87877917 -67752203 + Lx5 LINE L1 6789 7045 -5 7 1255 845 307 35 4 chr4 87877989 87878221 -67751899 + B4A SINE B4 2 240 -52 7 1255 194 62 0 30 chr4 87878366 87878399 -67751721 + (TAG)n Simple_repeat Simple_repeat 1 32 0 7 1255 201 74 0 0 chr4 87879314 87879341 -67750779 + (ATG)n Simple_repeat Simple_repeat 3 29 0 7 1255 989 191 88 0 chr4 87880522 87880726 -67749394 - URR1A DNA MER1_type 0 226 5 7 1255 456 211 80 36 chr4 87880910 87881048 -67749072 + B1_Mur3 SINE Alu 3 146 -3 7 1255 210 71 0 0 chr4 87882239 87882267 -67747853 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1255 198 0 0 0 chr4 87882760 87882782 -67747338 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1255 189 0 0 0 chr4 87883988 87884009 -67746111 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1255 618 272 130 70 chr4 87886051 87886095 -67744025 - MT2A LTR ERVL 0 601 549 7 1255 489 34 0 0 chr4 87886095 87886154 -67743966 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1255 1267 222 139 22 chr4 87886154 87886521 -67743599 - MT2A LTR ERVL -53 548 1 7 1255 315 227 0 39 chr4 87886575 87886653 -67743467 - ORR1A3-int LTR MaLR -1324 639 565 7 1255 2831 189 77 21 chr4 87886653 87887237 -67742883 - MERVL_2A-int LTR ERVL -133 5628 5033 7 1255 2768 47 0 121 chr4 87887237 87887652 -67742468 - RLTR10B2 LTR ERVK 0 365 1 7 1255 2831 189 77 21 chr4 87887652 87887743 -67742377 - MERVL_2A-int LTR ERVL -729 5032 4915 7 1255 242 267 83 8 chr4 87888098 87888219 -67741901 - L1MB7 LINE L1 -15 6169 6040 7 1255 601 265 44 39 chr4 87888342 87888546 -67741574 - ID_B1 SINE B4 -2 222 18 7 1255 243 83 0 0 chr4 87888675 87888685 -67741435 + (TG)n Simple_repeat Simple_repeat 2 11 0 7 1255 246 62 0 0 chr4 87888685 87888717 -67741403 + (CTTTG)n Simple_repeat Simple_repeat 1 32 0 7 1255 243 83 0 0 chr4 87888717 87888742 -67741378 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1255 460 239 80 0 chr4 87889346 87889459 -67740661 - MTEa LTR MaLR -257 122 1 7 1255 1246 94 28 6 chr4 87889836 87890018 -67740102 + B2_Mm2 SINE B2 1 186 -9 7 1255 707 250 52 11 chr4 87891653 87891827 -67738293 - B3A SINE B2 -17 181 1 7 1255 396 0 0 0 chr4 87892244 87892288 -67737832 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1255 985 196 115 19 chr4 87892351 87892664 -67737456 + Lx7 LINE L1 7354 7696 0 7 1255 230 108 0 0 chr4 87892834 87892871 -67737249 - B1_Mur1 SINE Alu -17 132 96 7 1255 531 269 132 81 chr4 87892872 87893141 -67736979 - Lx8 LINE L1 -981 6492 6192 7 1255 777 262 23 23 chr4 87893141 87893356 -67736764 - B3 SINE B2 0 216 2 7 1255 531 269 132 81 chr4 87893356 87893434 -67736686 - Lx8 LINE L1 -1282 6191 6127 7 1255 340 187 0 86 chr4 87893586 87893963 -67736157 + (CATCC)n Simple_repeat Simple_repeat 1 344 0 7 1255 3707 284 87 61 chr4 87893969 87897333 -67732787 - Lx8 LINE L1 -1658 5986 2527 7 1255 191 289 19 0 chr4 87897433 87897485 -67732635 - MIRb SINE MIR -191 77 25 7 1255 545 259 67 67 chr4 87897523 87897837 -67732283 - L1MB8 LINE L1 -9 6169 5856 7 1255 28 0 0 0 chr4 87898350 87898378 -67731742 + AT_rich Low_complexity Low_complexity 1 28 0 7 1255 380 158 184 7 chr4 87898451 87898546 -67731574 - ORR1D2 LTR MaLR -3 376 270 7 1255 295 260 0 14 chr4 87898553 87898627 -67731493 - ORR1D2 LTR MaLR -297 73 1 7 1255 4327 222 54 80 chr4 87898627 87899536 -67730584 - ORR1D2-int LTR MaLR 0 1370 452 7 1255 249 128 0 0 chr4 87899536 87899583 -67730537 + (TATG)n Simple_repeat Simple_repeat 2 48 0 7 1255 4327 222 54 80 chr4 87899583 87900079 -67730041 - ORR1D2-int LTR MaLR -919 451 1 7 1255 1135 269 99 22 chr4 87900079 87900391 -67729729 - ORR1D2 LTR MaLR 0 370 35 7 1255 3113 26 2 78 chr4 87900499 87900921 -67729199 + RLTR10 LTR ERVK 1 390 0 7 1255 7606 15 29 0 chr4 87900931 87901852 -67728268 + RLTR10-int LTR ERVK 41 988 -999 7 1255 8143 27 6 0 chr4 87901928 87902917 -67727203 + RLTR10-int LTR ERVK 990 1984 -3 7 1255 3113 26 2 78 chr4 87902919 87903341 -67726779 + RLTR10 LTR ERVK 1 390 0 7 1255 605 296 53 8 chr4 87903437 87903602 -67726518 - B4A SINE B4 -14 278 109 7 1255 195 42 0 0 chr4 87903602 87903626 -67726494 + (GGTTG)n Simple_repeat Simple_repeat 1 24 0 7 1255 605 296 53 8 chr4 87903626 87903725 -67726395 - B4A SINE B4 -184 108 3 7 1255 273 57 0 0 chr4 87904606 87904641 -67725479 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 7 1255 253 333 56 0 chr4 87904641 87904731 -67725389 - B3 SINE B2 -17 199 105 7 1255 383 197 0 0 chr4 87904726 87904797 -67725323 - B2_Mm2 SINE B2 -123 72 2 7 1255 262 300 186 0 chr4 87904809 87904949 -67725171 + Charlie2a DNA MER1_type 49 214 -2647 7 1255 517 267 139 15 chr4 87905083 87905349 -67724771 + Charlie2a DNA MER1_type 2265 2563 -298 7 1255 318 244 0 0 chr4 87905349 87905431 -67724689 + (TA)n Simple_repeat Simple_repeat 1 82 0 7 1255 419 276 74 21 chr4 87905453 87905642 -67724478 + Charlie2a DNA MER1_type 2599 2797 -64 7 1255 201 305 17 118 chr4 87905891 87906010 -67724110 + L2b LINE L2 3234 3340 -35 7 1255 804 132 0 0 chr4 87906590 87906719 -67723401 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 7 1255 369 297 20 0 chr4 87906735 87906836 -67723284 - B1_Mur1 SINE Alu 0 149 47 7 1255 230 276 45 11 chr4 87906846 87906934 -67723186 + MER5A1 DNA MER1_type 37 127 -39 7 1255 561 333 0 0 chr4 87907034 87907187 -67722933 + MER58A DNA MER1_type 1 153 -71 7 1255 414 85 0 0 chr4 87907222 87907281 -67722839 + (TATG)n Simple_repeat Simple_repeat 3 61 0 7 1255 551 145 212 36 chr4 87907281 87907446 -67722674 - Lx3C LINE L1 -15 6961 6768 7 1255 351 351 96 35 chr4 87907510 87907708 -67722412 + L2 LINE L2 1439 1648 -1771 7 1255 21 0 0 0 chr4 87907878 87907899 -67722221 + AT_rich Low_complexity Low_complexity 1 21 0 7 1255 262 338 39 13 chr4 87908570 87908661 -67721459 - B1F SINE Alu -14 106 14 7 1255 421 287 76 72 chr4 87908877 87909158 -67720962 + B4 SINE B4 7 281 -11 7 1255 486 0 0 0 chr4 87909169 87909223 -67720897 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1255 751 271 45 53 chr4 87909478 87909743 -67720377 + Lx6 LINE L1 7125 7387 -73 7 1255 437 245 133 41 chr4 87910738 87910934 -67719186 - MIRb SINE MIR -45 223 10 7 1255 294 247 12 0 chr4 87911554 87911635 -67718485 + L1MB8 LINE L1 5824 5905 -273 8 1255 1066 286 113 31 chr4 87911939 87912708 -67717412 - L1MC4a LINE L1 -182 7700 6869 8 1255 452 327 6 69 chr4 87913314 87913488 -67716632 - RSINE1 SINE B4 0 165 3 8 1255 575 284 0 16 chr4 87913503 87913632 -67716488 - ID_B1 SINE B4 -1 223 97 8 1255 235 0 0 54 chr4 87913659 87913696 -67716424 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 1255 303 289 68 75 chr4 87913697 87913858 -67716262 - RSINE1 SINE B4 -3 162 3 8 1255 325 384 53 0 chr4 87914227 87914378 -67715742 - L1MEd LINE L1 -5737 382 224 8 1255 469 223 11 10 chr4 87914517 87914628 -67715492 + B1F SINE Alu 12 117 0 8 1255 610 164 56 11 chr4 87915572 87915751 -67714369 - Lx9 LINE L1 -1 7643 7457 8 1255 1250 208 65 3 chr4 87915752 87916061 -67714059 + Lx9 LINE L1 7086 7413 -231 8 1255 23 54 0 0 chr4 87917084 87917121 -67712999 + AT_rich Low_complexity Low_complexity 1 37 0 8 1255 764 50 10 0 chr4 87917254 87917355 -67712765 + (TTCTC)n Simple_repeat Simple_repeat 1 102 0 8 1255 708 74 0 0 chr4 87917360 87917455 -67712665 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 8 1255 378 0 0 0 chr4 87918177 87918219 -67711901 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1255 4144 108 18 26 chr4 87918942 87919597 -67710523 - Lx LINE L1 -7 6647 5998 8 1255 228 203 87 0 chr4 87919627 87919696 -67710424 - ID4_ SINE ID -4 79 5 8 1255 537 16 0 0 chr4 87919699 87919761 -67710359 + (TCCCC)n Simple_repeat Simple_repeat 1 62 0 8 1255 365 287 36 14 chr4 87919788 87919926 -67710194 - B1F SINE Alu -8 141 1 8 1255 688 312 10 50 chr4 87920768 87920967 -67709153 - B3 SINE B2 -25 191 1 8 1255 336 294 18 24 chr4 87921678 87921845 -67708275 + CT-rich Low_complexity Low_complexity 2 167 0 8 1255 2750 192 11 74 chr4 87921945 87922564 -67707556 - RMER1B Other Other 0 1066 487 8 1255 320 281 40 40 chr4 87922544 87922670 -67707450 - RMER1A Other Other -746 284 159 8 1255 707 291 60 26 chr4 87924467 87924732 -67705388 - B4 SINE B4 -13 279 6 8 1255 233 200 43 22 chr4 87925764 87925810 -67704310 - ID4_ SINE ID -6 77 31 8 1255 229 316 15 127 chr4 87925802 87925936 -67704184 + MT2B LTR ERVL 139 257 -344 8 1255 639 264 0 27 chr4 87925834 87925982 -67704138 + B1_Mur1 SINE Alu 5 148 -1 8 1255 195 42 0 0 chr4 87926112 87926136 -67703984 + (TTATA)n Simple_repeat Simple_repeat 5 28 0 8 1255 766 206 56 47 chr4 87926513 87926727 -67703393 + B3 SINE B2 1 216 0 8 1255 36232 30 1 0 chr4 87927055 87933983 -67696137 - L1Md_T LINE L1 0 6585 1 8 1255 219 218 0 0 chr4 87934402 87934457 -67695663 + CT-rich Low_complexity Low_complexity 3 57 0 8 1255 21 0 0 0 chr4 87935295 87935316 -67694804 + AT_rich Low_complexity Low_complexity 1 21 0 8 1255 552 217 0 19 chr4 87935573 87935681 -67694439 + B3A SINE B2 1 106 -92 8 1255 547 262 147 19 chr4 87935984 87936291 -67693829 - L1MB8 LINE L1 -1 6177 5832 8 1255 966 289 91 35 chr4 87936415 87937209 -67692911 - L1MA5A LINE L1 -366 5931 5076 8 1255 696 229 44 30 chr4 87937211 87937414 -67692706 + B3 SINE B2 1 206 -10 8 1255 537 242 17 0 chr4 87937446 87937566 -67692554 + ID_B1 SINE B4 100 221 -3 8 1255 958 289 115 43 chr4 87937619 87938096 -67692024 - L1MA5A LINE L1 -1100 5043 4531 8 1255 1132 66 0 0 chr4 87938096 87938233 -67691887 + B1_Mus2 SINE Alu 2 138 -9 8 1255 958 289 115 43 chr4 87938233 87938846 -67691274 - L1MA5A LINE L1 -1613 4530 3875 8 1255 562 243 168 23 chr4 87938887 87939060 -67691060 - B3 SINE B2 0 216 19 8 1255 563 236 166 37 chr4 87939089 87939415 -67690705 - L1MA5A LINE L1 -2296 3847 3480 8 1255 2844 186 76 7 chr4 87939399 87939978 -67690142 - Lx5 LINE L1 0 7050 6432 8 1255 1138 88 0 0 chr4 87940336 87940483 -67689637 - B1_Mus2 SINE Alu 0 147 1 8 1255 562 269 77 0 chr4 87940532 87940662 -67689458 - RSINE1 SINE B4 -15 150 11 8 1255 315 0 0 0 chr4 87940671 87940706 -67689414 + (TATG)n Simple_repeat Simple_repeat 2 36 0 8 1255 1002 112 35 0 chr4 87940724 87940867 -67689253 - B1_Mus1 SINE Alu 0 148 1 8 1255 457 311 5 7 chr4 87940875 87941106 -67689014 - L1MB8 LINE L1 -355 5829 5601 8 1255 713 292 5 15 chr4 87942129 87942324 -67687796 - B3A SINE B2 -5 193 1 8 1255 234 0 0 0 chr4 87942567 87942593 -67687527 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1255 732 189 63 0 chr4 87942612 87942739 -67687381 - B1_Mur2 SINE Alu -11 138 4 8 1255 24 32 0 0 chr4 87943400 87943431 -67686689 + AT_rich Low_complexity Low_complexity 1 31 0 8 1255 2040 210 15 60 chr4 87943464 87943985 -67686135 - Lx5 LINE L1 -75 6975 6478 8 1255 656 226 196 11 chr4 87944003 87944182 -67685938 - B3 SINE B2 0 216 5 8 1255 299 242 0 0 chr4 87944400 87944462 -67685658 + B1F SINE Alu 65 126 -23 8 1255 29 0 0 0 chr4 87944662 87944691 -67685429 + AT_rich Low_complexity Low_complexity 1 29 0 8 1255 26 0 0 0 chr4 87944768 87944794 -67685326 + AT_rich Low_complexity Low_complexity 1 26 0 8 1255 21 0 0 0 chr4 87945013 87945034 -67685086 + AT_rich Low_complexity Low_complexity 1 21 0 8 1255 1230 100 0 0 chr4 87945811 87945991 -67684129 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1255 568 267 42 134 chr4 87946017 87946155 -67683965 - B3 SINE B2 0 216 85 8 1255 317 24 24 0 chr4 87946155 87946197 -67683923 + (TATG)n Simple_repeat Simple_repeat 4 46 0 8 1255 568 267 42 134 chr4 87946197 87946296 -67683824 - B3 SINE B2 -132 84 1 8 1255 519 352 103 12 chr4 87947208 87947461 -67682659 - LTR33 LTR ERVL -237 278 3 8 1255 277 188 24 0 chr4 87947475 87947560 -67682560 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1255 283 288 17 35 chr4 87947583 87947698 -67682422 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 8 1255 740 315 20 43 chr4 87947810 87948109 -67682011 - B4A SINE B4 0 292 1 8 1256 245 321 0 53 chr4 87949583 87949754 -67680366 + L1MEg2 LINE L1 3 164 -6288 8 1256 582 295 85 37 chr4 87949849 87950237 -67679883 + L1MA4A LINE L1 5366 5764 -539 8 1256 180 111 0 0 chr4 87950237 87950264 -67679856 + (TAA)n Simple_repeat Simple_repeat 1 27 0 8 1256 582 295 85 37 chr4 87950264 87950333 -67679787 + L1MA4A LINE L1 5765 5844 -459 8 1256 227 318 11 11 chr4 87950659 87950748 -67679372 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1256 392 251 55 12 chr4 87950753 87950866 -67679254 - B4A SINE B4 -6 286 169 8 1256 279 0 0 0 chr4 87950918 87950949 -67679171 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1256 1739 214 29 48 chr4 87951022 87951435 -67678685 - MTD LTR MaLR -14 405 1 8 1256 397 323 94 16 chr4 87951593 87951848 -67678272 + L1MEg2 LINE L1 4571 4845 -2609 8 1256 1018 286 115 45 chr4 87952036 87953024 -67677096 + L1MEg2 LINE L1 5122 6178 -1276 8 1256 560 312 49 12 chr4 87953220 87953382 -67676738 - B4A SINE B4 -120 172 5 8 1256 497 293 37 16 chr4 87953550 87953741 -67676379 - Lx8 LINE L1 -590 6883 6689 8 1256 337 271 32 41 chr4 87953706 87953829 -67676291 + Lx8 LINE L1 7171 7292 -181 8 1256 1210 252 67 24 chr4 87954134 87954464 -67675656 + MER2 DNA MER2_type 1 344 -1 8 1256 252 311 38 8 chr4 87954881 87955014 -67675106 + L1ME3A LINE L1 5999 6135 -38 8 1256 28 29 0 0 chr4 87955488 87955523 -67674597 + AT_rich Low_complexity Low_complexity 1 35 0 8 1256 306 0 0 0 chr4 87955906 87955940 -67674180 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1256 364 298 17 85 chr4 87956188 87956364 -67673756 - RSINE1 SINE B4 0 165 2 8 1256 415 302 58 45 chr4 87956378 87956534 -67673586 - RSINE1 SINE B4 -6 159 2 8 1256 404 319 36 30 chr4 87957077 87957223 -67672897 + B3A SINE B2 53 205 -11 8 1256 937 137 283 25 chr4 87957243 87957483 -67672637 - Lx2B LINE L1 0 7000 6699 8 1256 571 295 69 27 chr4 87957636 87957824 -67672296 + Tigger5 DNA MER2_type 45 240 -2166 8 1256 425 279 9 26 chr4 87957822 87957936 -67672184 + Tigger5 DNA MER2_type 2291 2402 -4 8 1256 224 296 427 8 chr4 87957941 87958058 -67672062 - MIR SINE MIR -64 198 33 8 1256 431 252 96 20 chr4 87958059 87958205 -67671915 - Tigger7 DNA MER2_type -2018 473 317 8 1256 699 322 66 0 chr4 87958232 87958443 -67671677 - Tigger7 DNA MER2_type -2255 236 12 8 1256 186 43 0 0 chr4 87958524 87958547 -67671573 + (GTTTG)n Simple_repeat Simple_repeat 3 25 0 8 1256 323 287 208 51 chr4 87958629 87959080 -67671040 - L1M5 LINE L1 -403 5776 5255 8 1256 5894 85 17 8 chr4 87959232 87960216 -67669904 - Lx3_Mus LINE L1 -509 6500 5508 8 1256 3314 81 10 75 chr4 87960216 87960723 -67669397 + Lx3A LINE L1 6492 6965 -16 8 1256 249 33 0 0 chr4 87960724 87960754 -67669366 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 8 1256 25 31 0 0 chr4 87960797 87960829 -67669291 + AT_rich Low_complexity Low_complexity 1 32 0 8 1256 419 130 13 0 chr4 87961109 87961186 -67668934 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 8 1256 282 116 0 0 chr4 87961707 87961750 -67668370 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 8 1256 422 286 157 0 chr4 87961752 87961930 -67668190 - B3 SINE B2 -10 206 1 8 1256 907 283 154 20 chr4 87961939 87963265 -67666855 - L1MCa LINE L1 -1479 4842 3327 8 1256 5115 59 36 1 chr4 87963357 87964018 -67666102 - L1_Mus3 LINE L1 0 6638 5955 8 1256 264 340 133 12 chr4 87964124 87964446 -67665674 - L1MCa LINE L1 -6048 460 100 8 1256 387 105 0 0 chr4 87965305 87965362 -67664758 + (TCC)n Simple_repeat Simple_repeat 2 58 0 8 1256 41 0 0 36 chr4 87965373 87965408 -67664712 + AT_rich Low_complexity Low_complexity 1 34 0 8 1256 3131 60 0 7 chr4 87965408 87965812 -67664308 + L1Md_F2 LINE L1 6169 6569 -13 8 1256 41 0 0 36 chr4 87965812 87965832 -67664288 + AT_rich Low_complexity Low_complexity 1 20 0 8 1256 251 192 14 0 chr4 87966611 87966684 -67663436 + G-rich Low_complexity Low_complexity 5 78 0 8 1256 692 212 36 21 chr4 87967284 87967424 -67662696 - B1_Mur2 SINE Alu -7 142 1 8 1256 285 89 0 0 chr4 87967428 87967473 -67662647 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 8 1256 393 243 27 13 chr4 87967509 87967603 -67662517 + PB1D10 SINE Alu 2 98 -51 8 1256 271 272 0 90 chr4 87967633 87967722 -67662398 + ID2 SINE ID 3 83 0 8 1256 767 235 47 26 chr4 87968647 87968839 -67661281 - B3A SINE B2 -1 197 2 8 1256 403 264 111 25 chr4 87968975 87969173 -67660947 - L1ME1 LINE L1 -15 6164 5950 9 1256 433 247 106 11 chr4 87969534 87969714 -67660406 - L1ME1 LINE L1 -446 5728 5532 9 1256 288 0 0 0 chr4 87971487 87971519 -67658601 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1256 754 308 35 26 chr4 87972877 87973187 -67656933 + Lx8 LINE L1 7068 7380 -93 9 1256 427 319 68 50 chr4 87974623 87974844 -67655276 - MIRb SINE MIR -9 259 35 9 1256 28 29 0 0 chr4 87974900 87974935 -67655185 + AT_rich Low_complexity Low_complexity 1 35 0 9 1256 186 171 0 0 chr4 87974950 87974991 -67655129 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 9 1256 364 296 182 0 chr4 87974993 87975125 -67654995 - RSINE1 SINE B4 -9 156 1 9 1256 278 130 22 0 chr4 87975642 87975688 -67654432 - B3 SINE B2 -169 47 1 9 1256 4090 33 6 0 chr4 87976340 87976823 -67653297 - L1Md_F2 LINE L1 -3 6579 6094 9 1256 662 296 132 3 chr4 87977179 87977481 -67652639 - MER2 DNA MER2_type -4 341 1 9 1256 1144 187 34 10 chr4 87978020 87978225 -67651895 - B3 SINE B2 -6 210 1 9 1256 25 0 0 0 chr4 87978638 87978663 -67651457 + AT_rich Low_complexity Low_complexity 1 25 0 9 1256 183 80 0 0 chr4 87978994 87979019 -67651101 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1256 239 358 116 67 chr4 87979046 87979522 -67650598 - L2a LINE L2 -3 3423 2925 9 1256 713 351 178 24 chr4 87979525 87980434 -67649686 - L2a LINE L2 -648 2771 1723 9 1256 21 36 0 0 chr4 87980692 87980720 -67649400 + AT_rich Low_complexity Low_complexity 1 28 0 9 1256 709 246 107 21 chr4 87980736 87980923 -67649197 + B3 SINE B2 1 203 -13 9 1256 507 95 0 0 chr4 87980958 87981032 -67649088 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1256 298 208 128 13 chr4 87981308 87981386 -67648734 - MLT1A LTR MaLR -7 367 281 9 1256 293 337 0 11 chr4 87981416 87981506 -67648614 - MLT1A LTR MaLR -172 193 105 9 1256 424 269 90 21 chr4 87981836 87981980 -67648140 - RSINE1 SINE B4 -8 157 4 9 1256 285 238 53 106 chr4 87984782 87984876 -67645244 - ORR1B2 LTR MaLR -278 89 1 9 1256 412 141 103 0 chr4 87984876 87984953 -67645167 - B2_Mm2 SINE B2 -109 86 2 9 1256 229 231 31 48 chr4 87986103 87986176 -67643944 - B1F SINE Alu -1 148 43 9 1256 234 0 0 0 chr4 87988300 87988326 -67641794 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1256 259 350 37 53 chr4 87988546 87988733 -67641387 + MIRc SINE MIR 66 249 -19 9 1256 201 47 22 44 chr4 87989162 87989207 -67640913 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1256 339 85 0 0 chr4 87990790 87990837 -67639283 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1256 584 179 214 0 chr4 87992397 87992514 -67637606 - B1_Mur2 SINE Alu -6 143 2 9 1256 216 0 0 0 chr4 87992721 87992745 -67637375 + (TTG)n Simple_repeat Simple_repeat 1 24 0 9 1256 622 288 35 55 chr4 87992772 87992974 -67637146 + B3A SINE B2 1 198 0 9 1256 883 228 14 50 chr4 87993002 87993224 -67636896 + B3 SINE B2 1 214 -2 9 1256 414 39 0 0 chr4 87993537 87993589 -67636531 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1256 469 307 0 52 chr4 87994375 87994509 -67635611 - RSINE1 SINE B4 0 165 39 9 1256 375 233 13 27 chr4 87994556 87994631 -67635489 - ID4 SINE ID -5 78 5 9 1256 191 258 44 29 chr4 87997159 87997227 -67632893 + MIRc SINE MIR 195 263 -5 9 1256 558 155 0 0 chr4 87997458 87997555 -67632565 + CT-rich Low_complexity Low_complexity 4 100 0 9 1256 321 320 173 5 chr4 87997606 87997819 -67632301 - B4 SINE B4 -41 251 2 9 1256 422 79 0 88 chr4 87998851 87998912 -67631208 + polypurine Low_complexity Low_complexity 1 59 0 9 1256 1065 128 0 0 chr4 87998912 87999092 -67631028 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1256 422 79 0 88 chr4 87999092 87999155 -67630965 + polypurine Low_complexity Low_complexity 60 114 0 9 1256 477 233 0 0 chr4 88000713 88000829 -67629291 + CT-rich Low_complexity Low_complexity 4 119 0 1 1256 1184 101 0 6 chr4 88000832 88001011 -67629109 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 2 1256 330 87 0 0 chr4 88002167 88002213 -67627907 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1256 1041 139 189 21 chr4 88002871 88003062 -67627058 - URR1A DNA MER1_type -3 223 1 4 1256 192 40 0 0 chr4 88003279 88003304 -67626816 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1256 259 307 82 52 chr4 88003657 88003791 -67626329 - MT2B LTR ERVL -297 304 167 6 1256 573 193 43 9 chr4 88003678 88003793 -67626327 - B1_Mur1 SINE Alu -30 119 1 7 1256 222 167 0 59 chr4 88003798 88003835 -67626285 + T-rich Low_complexity Low_complexity 12 48 0 8 1256 1247 41 0 0 chr4 88003835 88003982 -67626138 - B1_Mm SINE Alu 0 147 1 9 1256 222 167 0 59 chr4 88003982 88003995 -67626125 + T-rich Low_complexity Low_complexity 1 11 0 1 1256 339 279 193 5 chr4 88004312 88004514 -67625606 + L1MB2 LINE L1 5868 6107 -64 1 1256 36124 35 0 0 chr4 88006743 88012322 -67617798 + L1Md_T LINE L1 1 5589 -297 1 1256 9139 5 1 0 chr4 88012322 88013317 -67616803 + L1Md_T LINE L1 5590 6585 0 1 1256 28 0 0 0 chr4 88013317 88013345 -67616775 + AT_rich Low_complexity Low_complexity 1 28 0 1 1256 992 238 28 5 chr4 88014020 88014235 -67615885 - ID_B1 SINE B4 0 224 5 1 1256 33 0 0 0 chr4 88014261 88014294 -67615826 + AT_rich Low_complexity Low_complexity 1 33 0 1 1256 186 134 45 0 chr4 88015755 88015822 -67614298 + (TTTG)n Simple_repeat Simple_repeat 4 73 0 1 1256 21 0 0 0 chr4 88017475 88017496 -67612624 + AT_rich Low_complexity Low_complexity 1 21 0 1 1256 180 0 0 0 chr4 88019221 88019241 -67610879 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1256 230 308 54 45 chr4 88019281 88019393 -67610727 - B1_Mur2 SINE Alu -36 113 1 1 1256 373 247 31 0 chr4 88019299 88019396 -67610724 - ID_B1 SINE B4 -46 178 79 2 1256 188 34 0 33 chr4 88019921 88019951 -67610169 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1256 1190 43 0 0 chr4 88019951 88020089 -67610031 - B1_Mus1 SINE Alu -10 138 1 2 1256 31 0 0 0 chr4 88020098 88020129 -67609991 + AT_rich Low_complexity Low_complexity 1 31 0 2 1256 407 252 75 0 chr4 88020209 88020316 -67609804 + B1F1 SINE Alu 14 128 -21 2 1256 621 262 91 10 chr4 88020489 88020686 -67609434 - ID_B1 SINE B4 -10 214 2 2 1256 1158 241 113 18 chr4 88020837 88021218 -67608902 + MTD LTR MaLR 1 417 -2 2 1256 483 250 26 0 chr4 88021309 88021425 -67608695 + RSINE1 SINE B4 2 120 -45 2 1256 347 257 152 39 chr4 88021696 88021814 -67608306 - B3 SINE B2 -14 202 71 2 1256 459 52 0 0 chr4 88021814 88021872 -67608248 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1256 347 257 152 39 chr4 88021872 88021931 -67608189 - B3 SINE B2 -146 70 5 2 1256 196 337 60 20 chr4 88022001 88022101 -67608019 + MIRc SINE MIR 50 153 -115 3 1256 36126 34 1 0 chr4 88022101 88028086 -67602034 + L1Md_T LINE L1 1 5589 -297 3 1256 9120 7 0 0 chr4 88028086 88029081 -67601039 + L1Md_T LINE L1 5590 6584 -1 3 1256 22 0 0 0 chr4 88029314 88029336 -67600784 + AT_rich Low_complexity Low_complexity 1 22 0 3 1256 316 286 13 13 chr4 88029407 88029485 -67600635 - RSINE1 SINE B4 -85 80 3 3 1256 213 39 0 0 chr4 88029528 88029554 -67600566 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 1256 540 309 74 11 chr4 88029694 88030047 -67600073 - L1MC4 LINE L1 -402 7640 7266 3 1256 291 190 0 0 chr4 88030047 88030105 -67600015 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1256 180 219 0 0 chr4 88030097 88030138 -67599982 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 3 1256 231 186 0 0 chr4 88030275 88030318 -67599802 - L1MC4 LINE L1 -1092 6790 6748 3 1256 297 0 0 0 chr4 88031027 88031060 -67599060 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1256 523 234 38 105 chr4 88032519 88032729 -67597391 + B3A SINE B2 1 196 -2 3 1256 1082 81 0 33 chr4 88033314 88033467 -67596653 + B1_Mus1 SINE Alu 1 148 0 4 1256 708 12 0 0 chr4 88033528 88033609 -67596511 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1256 411 291 37 9 chr4 88033738 88033904 -67596216 - RSINE1 SINE B4 -118 174 1 4 1256 2615 67 60 20 chr4 88034184 88034535 -67595585 - RLTR8 LTR ERVK 0 365 1 4 1256 833 62 27 0 chr4 88034535 88034647 -67595473 - SRV_MM-int LTR ERVK 0 6167 6053 4 1256 21 36 0 0 chr4 88038044 88038072 -67592048 + AT_rich Low_complexity Low_complexity 1 28 0 4 1256 2004 97 32 0 chr4 88038207 88038517 -67591603 - ORR1A2 LTR MaLR -7 320 1 4 1256 795 182 210 0 chr4 88038583 88038759 -67591361 + B3 SINE B2 4 216 0 4 1256 642 171 20 7 chr4 88038787 88038934 -67591186 + GA-rich Low_complexity Low_complexity 3 151 0 4 1256 452 271 17 8 chr4 88038949 88039068 -67591052 - MTD LTR MaLR -299 120 1 4 1256 681 248 14 55 chr4 88040608 88040826 -67589294 - B4A SINE B4 -19 273 65 4 1256 712 283 90 51 chr4 88040909 88041241 -67588879 - Lx8 LINE L1 -25 7448 7104 5 1256 270 0 0 0 chr4 88042249 88042279 -67587841 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1256 626 264 12 19 chr4 88042282 88042444 -67587676 + B4A SINE B4 122 282 -10 5 1256 435 38 0 0 chr4 88042453 88042506 -67587614 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1256 23 0 0 0 chr4 88043428 88043451 -67586669 + AT_rich Low_complexity Low_complexity 1 23 0 5 1256 374 282 175 25 chr4 88044560 88044720 -67585400 + MER5A DNA MER1_type 1 184 -5 5 1256 600 294 63 0 chr4 88044784 88045005 -67585115 + MIR SINE MIR 13 247 -15 5 1256 1293 307 55 14 chr4 88045017 88045654 -67584466 - Charlie1a DNA MER1_type -450 1005 343 5 1256 876 249 14 32 chr4 88045702 88045922 -67584198 - B3 SINE B2 0 216 1 5 1256 320 312 12 0 chr4 88045993 88046073 -67584047 - Charlie1a DNA MER1_type -1372 83 3 5 1256 392 225 48 61 chr4 88046099 88046246 -67583874 - RLTR23 LTR ERV1 0 430 286 5 1256 2836 43 0 41 chr4 88047377 88047742 -67582378 - L1Md_F3 LINE L1 -13 6571 6222 6 1256 428 250 0 32 chr4 88047854 88047949 -67582171 - B1_Mur2 SINE Alu -56 93 2 6 1256 31 26 0 0 chr4 88048123 88048161 -67581959 + AT_rich Low_complexity Low_complexity 1 38 0 6 1256 201 143 0 0 chr4 88048164 88048199 -67581921 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1256 370 305 56 43 chr4 88048199 88048360 -67581760 - RSINE1 SINE B4 0 165 3 6 1256 570 203 54 30 chr4 88048612 88048793 -67581327 + B3 SINE B2 2 186 -9 6 1256 3671 109 11 9 chr4 88050385 88050938 -67579182 + L1_Mm LINE L1 3868 4421 -1462 6 1256 8121 74 20 59 chr4 88050933 88051973 -67578147 - Lx3_Mus LINE L1 -65 6944 5921 6 1256 198 0 0 0 chr4 88051973 88051995 -67578125 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1256 8121 74 20 59 chr4 88051995 88052176 -67577944 - Lx3_Mus LINE L1 -1089 5920 5773 6 1256 902 74 0 0 chr4 88052176 88052297 -67577823 + B1_Mus1 SINE Alu 18 138 -10 6 1256 209 33 33 0 chr4 88052297 88052327 -67577793 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1256 22 94 0 0 chr4 88052606 88052670 -67577450 + AT_rich Low_complexity Low_complexity 1 64 0 7 1256 268 303 26 35 chr4 88054369 88054482 -67575638 + MIRc SINE MIR 11 122 -146 7 1256 231 338 0 0 chr4 88059584 88059661 -67570459 + MLT1A LTR MaLR 260 336 -38 7 1256 694 230 147 43 chr4 88060959 88061305 -67568815 - L1MA5 LINE L1 -463 5837 5456 7 1256 279 0 0 0 chr4 88061355 88061386 -67568734 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1256 251 143 141 16 chr4 88061476 88061540 -67568580 - L1MA5 LINE L1 -912 5231 5160 7 1256 329 246 66 0 chr4 88061535 88061657 -67568463 + L1M3 LINE L1 4482 4611 -1529 7 1256 419 249 195 45 chr4 88061671 88062154 -67567966 - L1MA5 LINE L1 -992 5151 4597 7 1256 498 273 115 31 chr4 88062230 88062491 -67567629 - B4A SINE B4 -8 284 2 7 1256 437 244 139 9 chr4 88062493 88062707 -67567413 - L1MA5 LINE L1 -1529 4611 4374 7 1256 1002 249 235 31 chr4 88063027 88064031 -67566089 - L1MA5 LINE L1 -1952 4191 2978 7 1256 240 35 0 0 chr4 88064031 88064060 -67566060 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1256 1002 249 235 31 chr4 88064060 88064120 -67566000 - L1MA5 LINE L1 -3166 2977 2911 7 1256 339 25 0 0 chr4 88064733 88064773 -67565347 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1256 481 30 30 0 chr4 88064773 88064839 -67565281 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1256 533 219 0 25 chr4 88064845 88064967 -67565153 - PB1D9 SINE Alu -1 119 1 8 1256 814 223 113 11 chr4 88064988 88065174 -67564946 - B3 SINE B2 -6 210 6 8 1256 452 304 113 28 chr4 88065181 88065465 -67564655 + Charlie22a DNA MER1_type 137 444 -47 8 1256 360 261 34 11 chr4 88066064 88066153 -67563967 - MER103 DNA DNA -21 145 55 8 1256 1132 219 14 0 chr4 88066426 88066636 -67563484 - B3 SINE B2 -3 213 1 8 1256 435 219 190 4 chr4 88067317 88067564 -67562556 - L1MA7 LINE L1 -3 6288 5996 8 1256 24 77 0 0 chr4 88067702 88067754 -67562366 + AT_rich Low_complexity Low_complexity 1 52 0 8 1256 201 336 122 0 chr4 88068396 88068527 -67561593 - MIRc SINE MIR -120 148 2 8 1256 339 179 30 0 chr4 88068610 88068677 -67561443 - B1_Mur1 SINE Alu -7 142 74 8 1256 540 270 121 12 chr4 88069633 88069798 -67560322 - MTEb LTR MaLR -196 183 1 9 1256 237 106 0 0 chr4 88069820 88069867 -67560253 - L1M4 LINE L1 -1009 5137 5091 9 1256 756 269 166 12 chr4 88069883 88070473 -67559647 - L1M4 LINE L1 -1190 4956 4276 9 1256 494 248 91 15 chr4 88070484 88070681 -67559439 - L1M4 LINE L1 -1960 4186 3975 9 1256 1074 256 95 13 chr4 88070787 88071251 -67558869 + L1MB7 LINE L1 5677 6178 -6 9 1256 208 312 0 0 chr4 88071253 88071301 -67558819 - MIRm SINE MIR -156 120 73 9 1256 456 213 465 24 chr4 88071850 88072137 -67557983 - MTD LTR MaLR 0 419 6 9 1256 626 231 62 0 chr4 88072493 88072623 -67557497 - B1_Mur1 SINE Alu -10 139 2 9 1256 23 0 0 0 chr4 88072940 88072963 -67557157 + AT_rich Low_complexity Low_complexity 1 23 0 9 1256 1229 183 4 9 chr4 88073070 88073296 -67556824 + URR1B DNA MER1_type 1 225 0 9 1256 234 0 0 0 chr4 88073989 88074015 -67556105 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1256 669 257 165 38 chr4 88074179 88074470 -67555650 - Charlie13b DNA Charlie -13 499 172 9 1256 243 0 0 0 chr4 88074785 88074812 -67555308 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1256 23 0 0 0 chr4 88075226 88075249 -67554871 + AT_rich Low_complexity Low_complexity 1 23 0 1 1256 402 287 28 56 chr4 88075447 88075591 -67554529 + RSINE1 SINE B4 5 144 -21 1 1256 21 0 0 0 chr4 88075591 88075612 -67554508 + AT_rich Low_complexity Low_complexity 1 21 0 1 1256 560 358 5 0 chr4 88076053 88076240 -67553880 - B4A SINE B4 -5 287 100 1 1256 553 235 45 13 chr4 88076301 88076456 -67553664 - RSINE1 SINE B4 -1 164 5 1 1256 904 64 0 0 chr4 88077636 88077761 -67552359 - L1_Mus1 LINE L1 0 6567 6443 1 1256 35 41 0 0 chr4 88079153 88079202 -67550918 + AT_rich Low_complexity Low_complexity 1 49 0 1 1256 195 42 0 0 chr4 88079382 88079406 -67550714 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1256 593 296 44 0 chr4 88079901 88080036 -67550084 - RSINE1 SINE B4 -22 143 3 1 1257 1128 146 30 48 chr4 88081940 88082170 -67547950 + URR1A DNA MER1_type 1 226 0 1 1257 266 187 0 52 chr4 88085528 88085624 -67544496 + A-rich Low_complexity Low_complexity 1 91 0 1 1257 302 346 39 31 chr4 88085672 88085817 -67544303 - MIRc SINE MIR -104 164 14 1 1257 499 202 39 24 chr4 88086007 88086134 -67543986 + B1F SINE Alu 8 136 -13 1 1257 24 0 0 0 chr4 88087377 88087401 -67542719 + AT_rich Low_complexity Low_complexity 1 24 0 1 1257 505 204 282 0 chr4 88087430 88087572 -67542548 - B3A SINE B2 -16 182 1 1 1257 227 237 141 69 chr4 88087954 88088115 -67542005 + MIRm SINE MIR 82 258 -18 1 1257 222 272 0 36 chr4 88088523 88088607 -67541513 + CT-rich Low_complexity Low_complexity 2 82 0 1 1257 381 248 118 45 chr4 88089122 88089232 -67540888 - B1_Mm SINE Alu -26 121 4 1 1257 428 195 26 0 chr4 88089165 88089242 -67540878 - MT2B LTR ERVL -367 234 156 1 1257 3058 166 23 0 chr4 88089231 88089762 -67540358 - ORR1A3-int LTR MaLR -1420 543 1 1 1257 2190 92 21 59 chr4 88089762 88090099 -67540021 - ORR1A3 LTR MaLR 0 326 3 1 1257 324 250 233 0 chr4 88090211 88090331 -67539789 - B1F1 SINE Alu -1 148 1 1 1257 276 337 87 39 chr4 88090392 88090625 -67539495 - MIRb SINE MIR -13 255 3 1 1257 6027 187 41 7 chr4 88090725 88091857 -67538263 + Lx5 LINE L1 5878 7047 -3 1 1257 291 244 157 5 chr4 88092083 88092268 -67537852 + L1ME2 LINE L1 5272 5484 -695 1 1257 414 0 0 0 chr4 88092456 88092502 -67537618 + (TAA)n Simple_repeat Simple_repeat 1 46 0 1 1257 673 290 13 8 chr4 88092508 88092800 -67537320 + L1ME2 LINE L1 5728 6023 -139 1 1257 450 250 10 10 chr4 88092845 88092946 -67537174 + PB1D10 SINE Alu 10 110 -7 1 1257 233 109 22 0 chr4 88094743 88094789 -67535331 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 1257 1052 313 27 62 chr4 88095474 88095771 -67534349 - MT2A LTR ERVL -2 531 245 1 1257 192 77 0 0 chr4 88095771 88095797 -67534323 + (CAG)n Simple_repeat Simple_repeat 2 27 0 1 1257 1052 313 27 62 chr4 88095797 88095986 -67534134 - MT2A LTR ERVL -289 244 62 1 1257 406 256 0 0 chr4 88095911 88095997 -67534123 - MTE2b LTR MaLR -243 136 51 1 1257 771 236 73 22 chr4 88096736 88096914 -67533206 - MTD LTR MaLR -107 312 126 1 1257 227 79 0 26 chr4 88096914 88096953 -67533167 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1257 198 191 0 0 chr4 88096971 88097013 -67533107 + (CAA)n Simple_repeat Simple_repeat 2 43 0 1 1257 5005 76 16 5 chr4 88097013 88097685 -67532435 + L1Md_F2 LINE L1 5901 6580 -2 1 1257 415 123 0 12 chr4 88097738 88097820 -67532300 - Lx2A LINE L1 -4 7004 6924 1 1257 410 106 45 34 chr4 88097820 88097908 -67532212 - Lx2A LINE L1 -40 6968 6880 1 1257 29808 77 8 17 chr4 88097911 88102356 -67527764 + L1Md_F2 LINE L1 1184 5586 -297 1 1257 7655 65 0 14 chr4 88102357 88103364 -67526756 + L1Md_F2 LINE L1 5588 6580 -2 1 1257 248 28 56 0 chr4 88103368 88103404 -67526716 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1257 251 212 0 0 chr4 88103409 88103475 -67526645 + Lx7 LINE L1 4394 4459 -1421 1 1257 5605 222 47 26 chr4 88103496 88104555 -67525565 + Lx7 LINE L1 4753 5841 -1855 1 1257 1455 185 50 71 chr4 88104555 88104934 -67525186 + ORR1D1 LTR MaLR 1 371 -3 1 1257 5605 266 53 20 chr4 88104934 88106426 -67523694 + Lx7 LINE L1 5842 7384 -312 1 1257 262 143 41 0 chr4 88106496 88106545 -67523575 + PB1D10 SINE Alu 63 113 -4 1 1257 251 279 101 70 chr4 88106853 88107011 -67523109 + L1M2 LINE L1 2125 2287 -3856 1 1257 900 255 218 8 chr4 88107175 88107708 -67522412 + L1M2 LINE L1 2398 3042 -3101 1 1257 1286 274 27 27 chr4 88107715 88108090 -67522030 + MTEb LTR MaLR 1 375 -4 1 1257 367 302 10 30 chr4 88108094 88108193 -67521927 + PB1D10 SINE Alu 6 102 -15 1 1257 332 216 140 63 chr4 88108227 88108370 -67521750 + L1M2 LINE L1 3063 3216 -2927 1 1257 1782 201 45 40 chr4 88108424 88108827 -67521293 - MTD LTR MaLR -14 405 1 1 1257 836 213 74 32 chr4 88108877 88109066 -67521054 - B3 SINE B2 -1 215 19 1 1257 576 0 0 0 chr4 88109771 88109835 -67520285 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1257 508 262 74 21 chr4 88110936 88111178 -67518942 + L1M2 LINE L1 1606 1860 -3987 1 1257 8051 112 42 0 chr4 88111267 88112455 -67517665 - Lx2 LINE L1 -35 6962 5725 1 1257 1672 290 64 35 chr4 88112474 88113300 -67516820 + L1_Mur3 LINE L1 2135 2984 -2896 1 1257 34 55 0 0 chr4 88113343 88113398 -67516722 + AT_rich Low_complexity Low_complexity 1 55 0 1 1257 898 249 122 52 chr4 88113458 88113809 -67516311 + L1M2 LINE L1 4397 4826 -1317 1 1257 599 202 96 9 chr4 88113811 88113926 -67516194 + B1_Mur1 SINE Alu 1 125 -24 1 1257 582 89 3 13 chr4 88114074 88114163 -67515957 - ORR1B1 LTR MaLR -8 386 288 1 1257 2918 150 12 10 chr4 88114174 88114672 -67515448 + L1_Mur2 LINE L1 4858 5356 -521 1 1257 1149 296 39 60 chr4 88114672 88115605 -67514515 - L1_Mur3 LINE L1 -3032 3111 2196 1 1257 375 23 0 0 chr4 88115633 88115677 -67514443 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1257 247 358 21 21 chr4 88115679 88115776 -67514344 - B4A SINE B4 -194 98 2 1 1257 1437 264 95 21 chr4 88116089 88116572 -67513548 - Lx9 LINE L1 -118 7526 7008 1 1257 327 192 0 0 chr4 88116643 88116716 -67513404 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1257 257 76 52 52 chr4 88116808 88116905 -67513215 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1257 541 266 49 21 chr4 88116965 88117107 -67513013 - B1_Mur2 SINE Alu -2 147 2 1 1257 252 279 0 32 chr4 88118347 88118410 -67511710 + L1MA4 LINE L1 382 442 -6407 1 1257 1457 132 5 18 chr4 88118526 88118750 -67511370 - URR1A DNA MER1_type 0 226 6 1 1257 256 303 76 21 chr4 88119323 88119468 -67510652 + L1MA4 LINE L1 2605 2757 -4092 1 1257 977 304 31 28 chr4 88119468 88119747 -67510373 + B4A SINE B4 1 281 -11 1 1257 414 0 0 0 chr4 88119747 88119793 -67510327 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1257 977 304 31 28 chr4 88119793 88119804 -67510316 + B4A SINE B4 282 292 0 1 1257 282 333 0 0 chr4 88119815 88119887 -67510233 + B4 SINE B4 221 292 0 1 1257 810 251 82 94 chr4 88119934 88120418 -67509702 + L1MA4 LINE L1 2773 3239 -3606 1 1257 3049 288 91 36 chr4 88120567 88122052 -67508068 + L1MA4 LINE L1 4412 5978 -867 1 1257 2049 302 70 22 chr4 88122142 88122874 -67507246 + Lx8 LINE L1 6244 7010 -463 1 1257 587 271 14 0 chr4 88122884 88123028 -67507092 + Lx8 LINE L1 6829 6974 -499 1 1257 965 262 60 28 chr4 88123294 88123386 -67506734 + L1MA4 LINE L1 6393 6484 -518 1 1257 216 0 0 0 chr4 88123386 88123410 -67506710 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1257 965 262 60 28 chr4 88123410 88123635 -67506485 + L1MA4 LINE L1 6485 6719 -283 1 1257 327 253 1 0 chr4 88123665 88123772 -67506348 - L1M1 LINE L1 -591 5700 5593 1 1257 2977 56 97 0 chr4 88123829 88124189 -67505931 - MTA_Mm LTR MaLR 0 396 2 1 1257 705 274 48 16 chr4 88124237 88124426 -67505694 + B3A SINE B2 1 195 -3 1 1257 25 0 0 0 chr4 88125616 88125641 -67504479 + AT_rich Low_complexity Low_complexity 1 25 0 1 1257 704 270 73 90 chr4 88126341 88126638 -67503482 - B4A SINE B4 0 292 2 1 1257 2383 120 3 18 chr4 88126657 88126989 -67503131 - ORR1A2 LTR MaLR 0 327 1 1 1257 37724 27 0 8 chr4 88127281 88132322 -67497798 + L1Md_T LINE L1 591 5586 -297 1 1257 9003 34 0 0 chr4 88132322 88133318 -67496802 + L1Md_T LINE L1 5587 6582 0 1 1257 180 0 0 0 chr4 88133579 88133599 -67496521 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1257 486 0 0 0 chr4 88133639 88133693 -67496427 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1257 607 283 99 92 chr4 88134311 88134824 -67495296 - MLT2B5 LTR ERVL -83 518 2 1 1257 273 217 0 0 chr4 88135004 88135133 -67494987 + CT-rich Low_complexity Low_complexity 2 130 0 1 1257 180 182 0 0 chr4 88135144 88135188 -67494932 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 1 1257 225 0 0 0 chr4 88135205 88135230 -67494890 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1257 198 0 0 0 chr4 88135230 88135251 -67494869 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1257 186 43 0 0 chr4 88135256 88135279 -67494841 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1257 239 115 21 84 chr4 88135308 88135403 -67494717 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 1 1257 261 0 0 0 chr4 88135407 88135436 -67494684 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1257 2723 83 3 0 chr4 88136037 88136363 -67493757 + ORR1A2 LTR MaLR 1 327 0 1 1257 224 91 0 22 chr4 88136672 88136717 -67493403 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1257 1553 206 122 6 chr4 88136746 88137108 -67493012 - MTD LTR MaLR 0 419 16 1 1257 438 139 0 0 chr4 88137108 88137180 -67492940 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1257 330 185 0 0 chr4 88137226 88137280 -67492840 + 5S rRNA rRNA 1 54 -67 1 1257 1412 80 42 11 chr4 88137414 88137603 -67492517 + B2_Mm2 SINE B2 1 195 0 1 1257 626 327 25 127 chr4 88137615 88138018 -67492102 - MLT1B LTR MaLR -23 367 6 1 1257 354 295 24 39 chr4 88138133 88138260 -67491860 + MER5A1 DNA MER1_type 8 132 -34 1 1257 304 370 82 0 chr4 88138308 88138454 -67491666 + MER5A DNA MER1_type 1 158 -31 1 1257 3481 73 2 20 chr4 88138903 88139351 -67490769 + L1Md_F2 LINE L1 6132 6571 -11 1 1257 5098 154 42 21 chr4 88139679 88139908 -67490212 + RMER19B LTR ERVK 1 230 -672 1 1257 258 56 0 0 chr4 88139908 88139944 -67490176 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1257 5098 154 42 21 chr4 88139944 88140585 -67489535 + RMER19B LTR ERVK 231 889 -13 1 1257 754 220 8 0 chr4 88140596 88140728 -67489392 - B1_Mur1 SINE Alu -16 133 1 1 1257 193 321 64 0 chr4 88140870 88140979 -67489141 - L2a LINE L2 -74 3352 3237 1 1257 407 305 65 7 chr4 88141179 88141334 -67488786 - MER3 DNA MER1_type -1 208 45 2 1257 362 331 12 54 chr4 88142451 88142617 -67487503 + MLT1A0 LTR MaLR 114 272 -93 2 1257 14786 21 0 0 chr4 88143062 88144745 -67485375 - L1_Mm LINE L1 -661 5222 3540 2 1257 3246 23 0 30 chr4 88144744 88144839 -67485281 + L1_Mm LINE L1 5209 5293 -590 2 1257 1957 9 0 0 chr4 88144839 88145050 -67485070 + L1Md_A LINE L1 6372 6582 0 2 1257 3246 23 0 30 chr4 88145050 88145343 -67484777 + L1_Mm LINE L1 5294 5586 -297 2 1257 8892 40 0 0 chr4 88145343 88146337 -67483783 + L1Md_T LINE L1 5587 6580 -2 2 1257 641 278 42 0 chr4 88147460 88147604 -67482516 + RSINE1 SINE B4 12 161 -4 2 1257 225 322 186 0 chr4 88148321 88148439 -67481681 + MIR SINE MIR 15 154 -108 2 1257 306 0 0 0 chr4 88150081 88150115 -67480005 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1257 333 208 0 0 chr4 88151532 88151609 -67478511 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1257 442 280 76 8 chr4 88151815 88151934 -67478186 - B4A SINE B4 -165 127 1 2 1257 9131 126 58 3 chr4 88152304 88153823 -67476297 - Lx4A LINE L1 0 7058 5461 2 1257 405 158 66 0 chr4 88153816 88153892 -67476228 + RMER1A Other Other 715 795 -235 2 1257 3879 146 91 18 chr4 88153894 88154522 -67475598 - RLTR33 LTR ERVK -4 674 1 2 1257 873 102 61 77 chr4 88154662 88154843 -67475277 + RMER1A Other Other 791 968 -62 2 1257 302 107 18 0 chr4 88154853 88154909 -67475211 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1257 533 306 0 101 chr4 88154923 88155101 -67475019 + B3A SINE B2 39 198 0 2 1257 545 105 12 0 chr4 88157189 88157275 -67472845 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1257 201 333 33 0 chr4 88157698 88157758 -67472362 - MIRb SINE MIR -6 262 201 2 1257 389 347 71 45 chr4 88158478 88158858 -67471262 + MLT1B LTR MaLR 1 390 0 2 1257 450 0 0 0 chr4 88159996 88160046 -67470074 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1257 189 191 0 60 chr4 88161265 88161315 -67468805 - MIRb SINE MIR -81 187 141 2 1257 346 296 0 80 chr4 88162327 88162452 -67467668 + L1M3 LINE L1 5616 5730 -453 2 1257 200 155 56 0 chr4 88162517 88162588 -67467532 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1257 252 115 81 16 chr4 88162625 88162749 -67467371 + (TG)n Simple_repeat Simple_repeat 2 133 0 2 1257 456 286 123 55 chr4 88163223 88163874 -67466246 - L1MB7 LINE L1 -295 5889 5191 2 1257 422 284 104 25 chr4 88164287 88164489 -67465631 - L1MC LINE L1 -535 5644 5427 2 1257 276 324 21 7 chr4 88164751 88164948 -67465172 - L1MC LINE L1 -757 5389 5186 2 1257 250 274 0 14 chr4 88165715 88165789 -67464331 - MLT1A1 LTR MaLR 0 408 336 2 1257 206 301 50 82 chr4 88166803 88166962 -67463158 + MIR SINE MIR 70 223 -39 2 1257 33 56 0 0 chr4 88167956 88168010 -67462110 + AT_rich Low_complexity Low_complexity 1 54 0 2 1257 24 0 0 0 chr4 88170226 88170250 -67459870 + AT_rich Low_complexity Low_complexity 1 24 0 2 1257 324 298 0 23 chr4 88170279 88170365 -67459755 - RSINE1 SINE B4 -12 153 70 2 1257 388 293 20 0 chr4 88170750 88170849 -67459271 + PB1D10 SINE Alu 1 101 -16 2 1257 1997 183 85 5 chr4 88170857 88170902 -67459218 + MTC LTR MaLR 1 51 -370 2 1257 2742 92 5 18 chr4 88170902 88171298 -67458822 + L1_Mus3 LINE L1 6247 6637 -1 2 1257 1997 183 85 5 chr4 88171298 88171642 -67458478 + MTC LTR MaLR 52 421 0 2 1257 231 258 34 0 chr4 88172615 88172704 -67457416 + L1MA5 LINE L1 6188 6279 -21 2 1257 432 0 0 0 chr4 88173185 88173233 -67456887 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1257 712 276 49 0 chr4 88173819 88173982 -67456138 + B3 SINE B2 46 216 0 2 1257 493 298 8 8 chr4 88174104 88174229 -67455891 + PB1 SINE Alu 1 125 -2 2 1257 736 279 0 49 chr4 88174244 88174406 -67455714 + RSINE1 SINE B4 12 165 0 2 1257 493 142 38 0 chr4 88174408 88174514 -67455606 + (CATA)n Simple_repeat Simple_repeat 1 110 0 2 1257 282 69 17 33 chr4 88174729 88174789 -67455331 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1257 390 302 55 12 chr4 88174829 88175084 -67455036 + L1M3 LINE L1 2253 2518 -3625 2 1257 29 70 0 0 chr4 88175169 88175226 -67454894 + AT_rich Low_complexity Low_complexity 1 57 0 2 1257 842 291 105 42 chr4 88175317 88175366 -67454754 + L1M3 LINE L1 2700 2749 -3391 2 1257 6225 96 24 8 chr4 88175366 88176297 -67453823 - Lx3A LINE L1 -1 6980 6035 2 1257 842 291 105 42 chr4 88176297 88177132 -67452988 + L1M3 LINE L1 2750 3639 -2501 2 1257 1323 268 107 6 chr4 88177139 88177503 -67452617 - MTD LTR MaLR 0 419 19 2 1257 5773 78 27 0 chr4 88177792 88178858 -67451262 - L1_Mus1 LINE L1 -569 6067 4962 2 1257 256 159 120 86 chr4 88178911 88179028 -67451092 - L1MCa LINE L1 -4979 1066 946 2 1257 397 221 99 42 chr4 88179753 88179895 -67450225 - L1MCa LINE L1 -5944 807 658 2 1257 342 45 0 0 chr4 88180533 88180577 -67449543 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1257 21 36 0 0 chr4 88181144 88181172 -67448948 + AT_rich Low_complexity Low_complexity 1 28 0 2 1257 695 206 28 0 chr4 88182327 88182468 -67447652 - B1_Mur3 SINE Alu 0 149 5 2 1257 1095 304 129 15 chr4 88182838 88183302 -67446818 + MLT2B3 LTR ERVL 17 533 -21 2 1257 314 239 48 116 chr4 88184500 88184647 -67445473 - L1M4 LINE L1 -639 5545 5409 2 1257 667 282 85 24 chr4 88184690 88184702 -67445418 - B4 SINE B4 -66 226 215 2 1257 621 40 0 0 chr4 88184702 88184778 -67445342 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1257 667 282 85 24 chr4 88184778 88184976 -67445144 - B4 SINE B4 -78 214 4 2 1257 359 248 105 30 chr4 88184981 88185114 -67445006 - L1M4 LINE L1 -816 5330 5188 2 1257 8856 127 35 12 chr4 88185118 88185229 -67444891 - Lx3C LINE L1 0 7000 6860 2 1257 459 0 0 0 chr4 88185229 88185280 -67444840 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1257 8856 105 22 34 chr4 88185280 88187457 -67442663 - Lx3C LINE L1 -117 6859 4749 2 1257 4758 64 0 0 chr4 88187457 88188053 -67442067 - L1_Mus1 LINE L1 0 6567 5972 2 1257 6922 108 13 67 chr4 88188053 88188094 -67442026 - Lx3C LINE L1 -1138 4748 4708 2 1257 397 323 96 4 chr4 88188102 88188332 -67441788 + L1M2 LINE L1 4597 4847 -1296 2 1257 527 226 26 9 chr4 88188416 88188532 -67441588 - B3 SINE B2 -36 180 63 2 1257 809 266 97 0 chr4 88188531 88188738 -67441382 - B4A SINE B4 -64 228 2 2 1257 417 320 113 34 chr4 88190452 88190779 -67439341 + L1M3a LINE L1 206 558 -6188 2 1257 696 295 116 0 chr4 88190820 88191027 -67439093 - B4A SINE B4 -56 236 6 2 1257 243 0 0 0 chr4 88191292 88191319 -67438801 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1257 270 0 0 0 chr4 88191319 88191348 -67438772 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1257 447 375 10 10 chr4 88192096 88192298 -67437822 + L1M3a LINE L1 1028 1229 -5540 2 1257 21 0 0 0 chr4 88193715 88193736 -67436384 + GC_rich Low_complexity Low_complexity 1 21 0 2 1257 216 167 0 0 chr4 88193774 88193822 -67436298 + A-rich Low_complexity Low_complexity 1 48 0 2 1257 290 294 65 38 chr4 88194457 88194719 -67435401 + L1M3a LINE L1 2280 2548 -4301 2 1257 1282 235 75 27 chr4 88195503 88195786 -67434334 + Lx7 LINE L1 5745 6046 -1650 2 1257 360 0 0 0 chr4 88195786 88195826 -67434294 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1257 1282 235 75 27 chr4 88195826 88196023 -67434097 + Lx7 LINE L1 6047 6247 -1449 2 1257 878 187 33 6 chr4 88196020 88196203 -67433917 + Lx6 LINE L1 6449 6636 -824 2 1257 222 259 144 11 chr4 88196786 88196876 -67433244 - PB1D10 SINE Alu -15 102 1 2 1257 982 219 53 9 chr4 88197181 88197407 -67432713 - MTC LTR MaLR 0 421 186 2 1257 198 0 0 0 chr4 88197792 88197814 -67432306 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1257 22 0 0 0 chr4 88198065 88198087 -67432033 + AT_rich Low_complexity Low_complexity 1 22 0 2 1257 4915 108 61 1 chr4 88198208 88199185 -67430935 - Lx4A LINE L1 -990 6068 5041 2 1257 412 315 117 25 chr4 88200271 88200587 -67429533 - RMER5 LTR ERV1 -11 523 179 2 1257 222 277 106 89 chr4 88200758 88200881 -67429239 - L2b LINE L2 -203 3172 3048 2 1257 191 174 43 0 chr4 88201001 88201047 -67429073 + T-rich Low_complexity Low_complexity 2 49 0 2 1257 24 32 0 0 chr4 88201442 88201473 -67428647 + AT_rich Low_complexity Low_complexity 1 31 0 2 1257 233 215 190 0 chr4 88201956 88202035 -67428085 + L1M2 LINE L1 4565 4658 -1485 2 1257 379 275 123 12 chr4 88202353 88202515 -67427605 + Lx8 LINE L1 7116 7295 -178 2 1257 500 316 6 0 chr4 88202530 88202698 -67427422 + GA-rich Low_complexity Low_complexity 3 171 0 2 1257 361 242 11 0 chr4 88202898 88202993 -67427127 + L1MA6 LINE L1 5910 6005 -295 2 1257 225 0 0 0 chr4 88203373 88203398 -67426722 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1257 21 57 0 0 chr4 88204723 88204758 -67425362 + AT_rich Low_complexity Low_complexity 1 35 0 2 1257 338 396 14 7 chr4 88204804 88204944 -67425176 + RSINE1 SINE B4 16 156 -9 2 1257 411 21 0 0 chr4 88204953 88205001 -67425119 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1257 306 316 70 60 chr4 88205043 88205242 -67424878 - L1M4c LINE L1 -5278 1106 906 2 1257 21 0 0 0 chr4 88205469 88205490 -67424630 + AT_rich Low_complexity Low_complexity 1 21 0 2 1257 1294 200 42 12 chr4 88206438 88207090 -67423030 + L1_Mur2 LINE L1 888 1507 -4370 2 1257 2892 224 75 9 chr4 88207122 88207960 -67422160 - RMER1B Other Other -13 1053 1 2 1257 12120 162 79 32 chr4 88207979 88208209 -67421911 + L1_Mur2 LINE L1 2564 2793 -3093 2 1257 336 48 0 0 chr4 88208209 88208251 -67421869 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 1257 12120 162 79 32 chr4 88208251 88210699 -67419421 + L1_Mur2 LINE L1 2794 5367 -519 2 157 18071 56 82 0 chr4 88210699 88213244 -67416876 + L1Md_F2 LINE L1 2833 5586 -297 2 1258 8262 43 0 2 chr4 88213244 88214242 -67415878 + L1Md_F2 LINE L1 5587 6582 0 2 1258 1586 94 5 0 chr4 88214247 88214471 -67415649 + L1Md_F2 LINE L1 5362 5586 -297 2 1258 6793 105 12 10 chr4 88214472 88214719 -67415401 + L1Md_F2 LINE L1 5588 5836 -746 2 1258 981 116 0 0 chr4 88214719 88214857 -67415263 + B1_Mus2 SINE Alu 1 138 -9 2 1258 396 0 0 0 chr4 88214857 88214901 -67415219 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1258 6793 105 12 10 chr4 88214901 88215645 -67414475 + L1Md_F2 LINE L1 5837 6581 -1 2 1258 2549 198 9 15 chr4 88216042 88216569 -67413551 + RLTR28 LTR ERVL 1 524 0 2 1258 243 0 0 0 chr4 88216926 88216953 -67413167 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2 1258 27 62 0 0 chr4 88218343 88218391 -67411729 + AT_rich Low_complexity Low_complexity 1 48 0 2 1258 345 289 24 12 chr4 88218519 88218603 -67411517 + RSINE1 SINE B4 18 102 -63 2 1258 361 156 13 13 chr4 88218651 88218729 -67411391 + CT-rich Low_complexity Low_complexity 2 79 0 2 1258 592 314 81 16 chr4 88219894 88220217 -67409903 + Lx8 LINE L1 6970 7313 -160 2 1258 256 283 0 34 chr4 88220217 88220334 -67409786 + GA-rich Low_complexity Low_complexity 1 113 0 2 1258 841 145 0 0 chr4 88220982 88221127 -67408993 + L1Md_F LINE L1 290 434 -6185 3 1258 16006 71 1 5 chr4 88221123 88223635 -67406485 + L1Md_F LINE L1 799 3361 -2525 3 1258 7856 40 0 3 chr4 88223635 88224527 -67405593 + L1Md_F2 LINE L1 5694 6582 0 3 1258 7640 95 9 5 chr4 88224922 88226036 -67404084 + L1_Mus4 LINE L1 5519 6636 0 3 1258 1791 181 45 21 chr4 88226643 88227020 -67403100 + RLTR31_Mm LTR ERVK 176 561 0 3 1258 5798 210 179 48 chr4 88227020 88228215 -67401905 + L1_Mur2 LINE L1 3263 4711 -1166 3 1258 1228 56 0 14 chr4 88228215 88228361 -67401759 + B1_Mus2 SINE Alu 3 146 -1 3 1258 5798 210 179 48 chr4 88228361 88228924 -67401196 + L1_Mur2 LINE L1 4712 5250 -627 3 1258 2438 177 11 27 chr4 88229995 88230349 -67399771 + Lx LINE L1 6070 6423 -231 3 1258 2240 133 10 0 chr4 88230349 88230657 -67399463 + RLTR10E LTR ERVK 1 311 0 3 1258 2438 177 11 27 chr4 88230657 88230748 -67399372 + Lx LINE L1 6424 6508 -146 3 1258 7709 44 25 1 chr4 88230748 88231716 -67398404 + L1Md_A LINE L1 215 1205 -5519 3 1258 10593 22 0 0 chr4 88231750 88232956 -67397164 + L1Md_T LINE L1 4381 5586 -297 3 1258 8968 38 0 0 chr4 88232956 88233952 -67396168 + L1Md_T LINE L1 5587 6582 0 3 1258 750 139 59 13 chr4 88233963 88234116 -67396004 + Lx LINE L1 6494 6653 -1 3 1258 724 294 70 35 chr4 88234134 88234540 -67395580 + Lx8 LINE L1 6877 7306 -167 3 1258 7381 106 22 16 chr4 88235590 88235601 -67394519 - Lx3A LINE L1 -4 6977 6969 3 1258 504 0 0 0 chr4 88235601 88235657 -67394463 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3 1258 7381 106 22 16 chr4 88235657 88236710 -67393410 - Lx3A LINE L1 -13 6968 5906 3 1258 383 162 12 0 chr4 88237463 88237543 -67392577 + (TAAA)n Simple_repeat Simple_repeat 1 81 0 3 1258 29 28 0 0 chr4 88238847 88238883 -67391237 + AT_rich Low_complexity Low_complexity 1 36 0 3 1258 267 31 0 0 chr4 88239060 88239092 -67391028 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1258 336 64 0 0 chr4 88239092 88239138 -67390982 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1258 292 302 36 36 chr4 88239920 88240030 -67390090 - MT2A LTR ERVL -312 221 112 3 1258 464 239 51 8 chr4 88240062 88240180 -67389940 - MT2A LTR ERVL -410 123 1 3 1258 286 333 28 0 chr4 88240188 88240296 -67389824 + B4A SINE B4 160 270 -22 3 1258 592 287 11 11 chr4 88240398 88240574 -67389546 + L1_Mur3 LINE L1 4989 5164 -716 3 1258 414 0 0 0 chr4 88241168 88241214 -67388906 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1258 352 336 55 0 chr4 88241233 88241361 -67388759 - B4A SINE B4 0 292 158 3 1258 551 305 53 46 chr4 88242344 88242629 -67387491 - RMER5 LTR ERV1 -10 524 238 3 1258 804 77 0 0 chr4 88242894 88242998 -67387122 + BGLII LTR ERVK 318 421 0 3 1258 251 78 6 0 chr4 88243211 88243251 -67386869 + BGLII LTR ERVK 382 422 0 3 1258 1007 147 0 6 chr4 88243319 88243497 -67386623 + CT-rich Low_complexity Low_complexity 3 179 0 3 1258 288 0 0 0 chr4 88243515 88243547 -67386573 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 3 1258 1092 112 0 16 chr4 88243550 88243916 -67386204 + (TTCC)n Simple_repeat Simple_repeat 1 359 0 3 1258 396 0 0 0 chr4 88243916 88243960 -67386160 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 3 1258 285 316 10 21 chr4 88244094 88244191 -67385929 + Lx8 LINE L1 7203 7298 -175 3 1258 230 191 0 0 chr4 88246198 88246240 -67383880 + MamGypLTR1a LTR Gypsy 96 137 -647 3 1258 387 306 109 23 chr4 88246275 88246496 -67383624 + Lx8 LINE L1 7042 7281 -192 3 1258 186 43 0 0 chr4 88246585 88246608 -67383512 + (CATA)n Simple_repeat Simple_repeat 2 24 0 3 1258 2020 58 0 4 chr4 88246649 88246893 -67383227 - L1_Mus2 LINE L1 0 6566 6324 3 1258 1690 262 44 13 chr4 88247071 88247598 -67382522 - MurERV4-int LTR ERVK -783 4477 3935 3 1258 2146 218 6 25 chr4 88247605 88248089 -67382031 + RLTR28 LTR ERVL 46 520 -4 3 1258 305 103 0 33 chr4 88248400 88248460 -67381660 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 3 1258 44 56 0 0 chr4 88249574 88249646 -67380474 + AT_rich Low_complexity Low_complexity 1 72 0 3 1258 595 171 13 0 chr4 88249928 88250086 -67380034 + CT-rich Low_complexity Low_complexity 1 160 0 3 1258 390 196 0 0 chr4 88250085 88250187 -67379933 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1258 8308 148 10 4 chr4 88250257 88251615 -67378505 - L1_Mm LINE L1 -7 5876 4511 3 1258 192 77 0 0 chr4 88251907 88251933 -67378187 + (TTATA)n Simple_repeat Simple_repeat 5 30 0 3 1258 237 197 0 0 chr4 88252252 88252323 -67377797 + CT-rich Low_complexity Low_complexity 2 72 0 3 1258 361 343 43 70 chr4 88252342 88252527 -67377593 - B4A SINE B4 0 292 113 3 1258 241 299 31 126 chr4 88253404 88253595 -67376525 - RMER5 LTR ERV1 -7 527 355 3 1258 777 22 0 0 chr4 88254068 88254159 -67375961 + (TC)n Simple_repeat Simple_repeat 2 92 0 3 1258 283 319 58 15 chr4 88255021 88255158 -67374962 + L1M3 LINE L1 4518 4660 -1480 3 1258 1069 213 13 22 chr4 88255192 88255418 -67374702 - MTB_Mm LTR MaLR -183 224 1 3 1258 419 118 12 50 chr4 88255778 88255858 -67374262 - B1_Mm SINE Alu 0 147 71 3 1258 315 0 0 0 chr4 88255928 88255963 -67374157 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1258 1667 102 13 4 chr4 88255996 88256231 -67373889 - L1_Mus3 LINE L1 0 6638 6402 3 1258 261 122 0 0 chr4 88256231 88256272 -67373848 + L1_Mm LINE L1 5166 5206 -677 3 1258 5454 144 69 6 chr4 88256871 88257725 -67372395 + Lx4A LINE L1 6149 7056 -2 3 1258 1174 61 0 70 chr4 88258680 88258838 -67371282 - B1_Mus1 SINE Alu 0 148 2 3 1258 371 275 97 30 chr4 88260560 88260725 -67369395 + ID_B1 SINE B4 26 201 -23 3 1258 270 296 104 0 chr4 88260743 88260858 -67369262 + ID_B1 SINE B4 85 211 -13 3 1258 198 0 0 0 chr4 88260871 88260893 -67369227 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3 1258 40605 26 0 6 chr4 88261111 88267091 -67363029 - L1Md_T LINE L1 -1 6581 643 3 1258 211 289 0 0 chr4 88267151 88267196 -67362924 + PB1D10 SINE Alu 36 80 -37 3 1258 425 291 8 0 chr4 88267272 88267389 -67362731 + B1_Mus2 SINE Alu 4 121 -26 3 1258 868 201 7 0 chr4 88267444 88267593 -67362527 + B1_Mur4 SINE Alu 1 150 0 3 1258 19617 108 19 5 chr4 88267810 88269487 -67360633 + Lx3_Mus LINE L1 2977 6276 -362 3 1258 240 35 0 0 chr4 88269487 88269516 -67360604 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1258 19617 103 29 4 chr4 88269516 88270758 -67359362 + Lx3_Mus LINE L1 4638 5917 -1092 3 1258 465 103 0 0 chr4 88270758 88270826 -67359294 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1258 9310 92 59 3 chr4 88270826 88271848 -67358272 + Lx3_Mus LINE L1 5918 6999 -10 3 1258 1461 231 68 26 chr4 88271871 88272253 -67357867 + RLTR28 LTR ERVL 113 510 -14 3 1258 24 0 0 0 chr4 88273952 88273976 -67356144 + AT_rich Low_complexity Low_complexity 1 24 0 3 1258 209 312 44 59 chr4 88274871 88274939 -67355181 - MER91A DNA Tip100 -31 165 99 3 1258 679 226 0 64 chr4 88276204 88276360 -67353760 - B1_Mur4 SINE Alu 0 150 5 3 1258 222 143 0 0 chr4 88277008 88277057 -67353063 + (GAA)n Simple_repeat Simple_repeat 2 50 0 3 1258 739 144 0 16 chr4 88277061 88277082 -67353038 + polypurine Low_complexity Low_complexity 1 21 0 3 1258 990 122 0 0 chr4 88277082 88277262 -67352858 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1258 739 144 0 16 chr4 88277262 88277320 -67352800 + polypurine Low_complexity Low_complexity 22 78 0 3 1258 1068 106 0 0 chr4 88277320 88277499 -67352621 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 1258 739 144 0 16 chr4 88277499 88277601 -67352519 + polypurine Low_complexity Low_complexity 79 180 0 3 1258 1140 79 0 0 chr4 88277608 88277786 -67352334 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 1258 362 257 88 10 chr4 88277986 88278088 -67352032 - B1F2 SINE Alu 0 149 40 3 1258 414 231 0 0 chr4 88278166 88278283 -67351837 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1258 1126 166 36 5 chr4 88278376 88278585 -67351535 - B2_Mm2 SINE B2 -1 215 1 3 1258 303 341 51 63 chr4 88278589 88278635 -67351485 - ID_B1 SINE B4 0 224 123 3 1258 395 247 10 20 chr4 88278635 88278734 -67351386 - B1_Mus1 SINE Alu -50 98 1 3 1258 303 341 51 63 chr4 88278734 88278764 -67351356 - ID_B1 SINE B4 0 122 52 3 1258 1393 185 37 3 chr4 88278983 88279281 -67350839 - Lx3C LINE L1 -60 6916 6609 3 1258 2975 157 52 4 chr4 88279279 88279874 -67350246 + Lx3C LINE L1 5327 5934 -1042 3 1258 2101 206 67 38 chr4 88281028 88281579 -67348541 + RMER2 LTR ERV1 1 567 0 3 1258 3210 124 33 4 chr4 88281629 88282115 -67348005 - RMER19A LTR ERVK -237 500 1 3 1258 608 151 0 0 chr4 88282115 88282206 -67347914 + B1_Mus1 SINE Alu 38 128 -20 3 1258 503 118 12 0 chr4 88282217 88282302 -67347818 + (GA)n Simple_repeat Simple_repeat 2 87 0 3 1258 22 35 0 0 chr4 88282428 88282457 -67347663 + AT_rich Low_complexity Low_complexity 1 29 0 3 1258 626 241 20 83 chr4 88282495 88282699 -67347421 - B3A SINE B2 0 198 8 3 1258 629 273 0 7 chr4 88282943 88283087 -67347033 - B1_Mur2 SINE Alu -6 143 1 3 1258 350 286 0 70 chr4 88283924 88284052 -67346068 + PB1D7 SINE Alu 1 119 -1 3 1258 201 74 0 0 chr4 88284276 88284303 -67345817 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 1258 379 154 31 0 chr4 88284306 88284371 -67345749 - B1_Mur2 SINE Alu -15 134 68 3 1258 3047 204 32 19 chr4 88284381 88285125 -67344995 - L1_Mur2 LINE L1 -3421 2456 1703 3 1258 1991 49 4 0 chr4 88285125 88285388 -67344732 - L1Md_F3 LINE L1 0 6584 6321 3 1258 1750 169 76 4 chr4 88285388 88285948 -67344172 - L1_Mur2 LINE L1 -4176 1701 1108 3 1258 4340 18 4 0 chr4 88286167 88286658 -67343462 + MT2_Mm LTR ERVL 1 493 0 3 1258 195 42 0 0 chr4 88286817 88286841 -67343279 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1258 505 221 166 0 chr4 88287673 88287818 -67342302 - Lx4A LINE L1 -781 6277 6109 3 1258 1984 123 8 14 chr4 88287815 88288185 -67341935 + L1_Mur2 LINE L1 3113 3480 -2397 3 1258 705 34 0 0 chr4 88288331 88288419 -67341701 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1258 26 0 0 0 chr4 88290576 88290602 -67339518 + AT_rich Low_complexity Low_complexity 1 26 0 3 1258 4549 130 26 11 chr4 88290612 88291333 -67338787 - Lx3B LINE L1 0 6973 6242 4 1258 34 72 0 0 chr4 88291438 88291507 -67338613 + AT_rich Low_complexity Low_complexity 1 69 0 4 1258 229 331 64 57 chr4 88291651 88291792 -67338328 + RSINE1 SINE B4 5 146 -19 4 1258 405 0 0 0 chr4 88291802 88291847 -67338273 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1258 360 0 0 0 chr4 88291847 88291886 -67338234 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1258 225 299 54 54 chr4 88291903 88291995 -67338125 + RSINE1 SINE B4 5 96 -69 4 1258 423 0 0 0 chr4 88292054 88292101 -67338019 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1258 276 53 0 0 chr4 88292101 88292138 -67337982 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1258 453 266 151 53 chr4 88292800 88293056 -67337064 - MT2A LTR ERVL -189 344 90 4 1258 327 278 67 42 chr4 88293051 88293171 -67336949 - MT2A LTR ERVL -410 123 1 4 1258 432 255 26 62 chr4 88293179 88293292 -67336828 + B4A SINE B4 160 268 -24 4 1258 226 208 0 0 chr4 88293297 88293345 -67336775 + Lx9 LINE L1 7105 7152 -492 4 1258 372 310 51 13 chr4 88293459 88293616 -67336504 + Lx8 LINE L1 7119 7281 -192 4 1258 430 211 18 0 chr4 88293662 88293776 -67336344 + GA-rich Low_complexity Low_complexity 4 119 0 4 1258 382 306 21 21 chr4 88293973 88294160 -67335960 + L1MA6 LINE L1 5912 6098 -202 4 1258 1155 88 0 0 chr4 88295506 88295653 -67334467 + B1_Mus2 SINE Alu 1 147 0 4 1258 2655 181 20 6 chr4 88295747 88296292 -67333828 - L1_Mur2 LINE L1 -3264 2613 2061 4 1258 539 29 0 14 chr4 88296293 88296363 -67333757 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1258 823 272 64 75 chr4 88296363 88296766 -67333354 - MT2A LTR ERVL -89 512 1 4 1258 475 288 14 43 chr4 88296767 88296905 -67333215 + B4A SINE B4 153 286 -6 4 1258 1492 271 17 14 chr4 88297019 88297538 -67332582 + L1_Mur3 LINE L1 4645 5165 -715 4 1258 458 284 72 61 chr4 88297912 88298190 -67331930 - RMER5 LTR ERV1 -16 518 238 4 1258 196 200 15 15 chr4 88298622 88298688 -67331432 + CT-rich Low_complexity Low_complexity 3 68 0 4 1258 336 281 110 67 chr4 88299935 88300099 -67330021 + RLTR41 LTR ERV1 276 446 0 4 1258 227 274 56 47 chr4 88300347 88300454 -67329666 + Lx7 LINE L1 6962 7069 -627 4 1258 304 350 72 18 chr4 88300484 88300650 -67329470 + Lx8 LINE L1 7126 7300 -173 4 1258 274 286 0 23 chr4 88300660 88300746 -67329374 + GA-rich Low_complexity Low_complexity 3 86 0 4 1258 297 243 26 67 chr4 88300947 88301139 -67328981 + L1MA8 LINE L1 5912 6089 -202 4 1258 9787 88 69 6 chr4 88301410 88303683 -67326437 + L1VL2 LINE L1 90 2522 -1093 4 1258 559 100 76 48 chr4 88303696 88303801 -67326319 + Lx LINE L1 6541 6648 -6 4 1258 3253 119 27 21 chr4 88303807 88304321 -67325799 + Lx LINE L1 6136 6652 -2 4 1258 30725 72 7 4 chr4 88304325 88309504 -67320616 + L1Md_F2 LINE L1 392 5586 -297 4 1258 8240 39 6 2 chr4 88309505 88310493 -67319627 + L1Md_F2 LINE L1 5588 6579 -3 4 1258 13291 161 18 9 chr4 88310507 88313141 -67316979 - L1_Mur1 LINE L1 -1390 4496 1841 4 1258 33778 35 0 0 chr4 88314202 88319652 -67310468 + L1Md_T LINE L1 43 5589 -297 4 1258 8869 12 0 0 chr4 88319652 88320648 -67309472 + L1Md_T LINE L1 5590 6585 0 4 1258 2321 204 34 20 chr4 88320926 88321422 -67308698 + RLTR28 LTR ERVL 1 503 -21 4 1258 1179 109 11 0 chr4 88321658 88321832 -67308288 + B2_Mm1t SINE B2 9 184 -9 4 1258 375 98 0 0 chr4 88321976 88322037 -67308083 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 1258 27 81 0 0 chr4 88323108 88323170 -67306950 + AT_rich Low_complexity Low_complexity 1 62 0 4 1258 427 69 17 0 chr4 88323470 88323528 -67306592 - HAL1-3A_ME LINE L1 -824 2034 1976 4 1258 417 39 0 0 chr4 88323529 88323580 -67306540 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1258 723 239 173 138 chr4 88323595 88324075 -67306045 - MT2A LTR ERVL -36 497 1 4 1258 290 313 67 30 chr4 88324076 88324211 -67305909 + B4A SINE B4 153 292 0 4 1258 1018 291 17 5 chr4 88324314 88324722 -67305398 + L1_Mur3 LINE L1 4645 5057 -823 4 1258 434 298 30 8 chr4 88324736 88324868 -67305252 - B4A SINE B4 0 292 158 4 1258 323 328 78 22 chr4 88325854 88326125 -67303995 - RMER5 LTR ERV1 -11 523 238 4 1258 312 152 38 12 chr4 88326536 88326616 -67303504 + CT-rich Low_complexity Low_complexity 3 84 0 4 1258 212 261 11 33 chr4 88326996 88327087 -67303033 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1258 454 312 88 19 chr4 88327783 88328090 -67302030 + Lx8 LINE L1 6971 7298 -175 4 1258 255 103 0 0 chr4 88328132 88328171 -67301949 + (GGA)n Simple_repeat Simple_repeat 2 40 0 4 1258 241 268 65 87 chr4 88328417 88328601 -67301519 + L1MA7 LINE L1 5910 6089 -202 4 1258 243 0 0 0 chr4 88328903 88328930 -67301190 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1258 546 211 93 8 chr4 88330186 88330315 -67299805 + B1_Mus2 SINE Alu 3 142 -5 4 1258 402 57 0 0 chr4 88330668 88330721 -67299399 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1258 195 274 6 11 chr4 88330720 88330897 -67299223 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1258 231 333 6 13 chr4 88330972 88331130 -67298990 + (CA)n Simple_repeat Simple_repeat 2 158 0 4 1258 185 247 0 23 chr4 88331163 88331250 -67298870 + (CATA)n Simple_repeat Simple_repeat 2 86 0 4 1258 1998 182 147 49 chr4 88331282 88331814 -67298306 + RLTR31A_Mm LTR ERVK 1 584 0 4 1258 297 222 0 0 chr4 88331839 88331938 -67298182 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1258 347 328 97 5 chr4 88332712 88332908 -67297212 - L1M2 LINE L1 -827 5316 5103 4 1258 316 316 48 48 chr4 88333154 88333257 -67296863 - RMER12 LTR ERVK 0 1322 1220 4 1258 727 247 14 53 chr4 88333521 88333730 -67296390 - RMER12 LTR ERVK -131 1191 991 4 1258 270 0 0 0 chr4 88333740 88333770 -67296350 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1258 3769 149 23 80 chr4 88333794 88334519 -67295601 - RMER12 LTR ERVK -581 741 61 4 1258 3292 89 16 9 chr4 88334519 88334949 -67295171 + RLTR10C LTR ERVK 1 433 -3 4 1258 3769 149 23 80 chr4 88334949 88335009 -67295111 - RMER12 LTR ERVK -1262 60 1 4 1258 3729 108 26 37 chr4 88335616 88336183 -67293937 + Lx LINE L1 6088 6648 -6 4 1258 32 26 0 0 chr4 88336340 88336379 -67293741 + AT_rich Low_complexity Low_complexity 1 39 0 4 1258 278 384 69 0 chr4 88337527 88337686 -67292434 + B4A SINE B4 4 173 -119 4 1258 265 296 0 0 chr4 88338379 88338460 -67291660 + CT-rich Low_complexity Low_complexity 1 81 0 4 1258 369 0 0 0 chr4 88338460 88338501 -67291619 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1258 456 67 0 0 chr4 88339333 88339393 -67290727 + (TTTTC)n Simple_repeat Simple_repeat 5 64 0 4 1258 260 292 0 0 chr4 88341290 88341362 -67288758 - B3 SINE B2 -130 86 15 4 1258 2519 62 7 3 chr4 88341369 88341676 -67288444 + L1_Mus3 LINE L1 6331 6638 0 4 1259 225 266 135 61 chr4 88344057 88344205 -67285915 + RMER2 LTR ERV1 367 525 -42 4 1259 22 56 0 0 chr4 88344727 88344763 -67285357 + AT_rich Low_complexity Low_complexity 1 36 0 4 1259 735 12 0 0 chr4 88345656 88345740 -67284380 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1259 572 281 30 30 chr4 88346559 88346728 -67283392 + ID_B1 SINE B4 56 224 0 4 1259 302 116 0 0 chr4 88347314 88347357 -67282763 + HAL1-3A_ME LINE L1 1979 2021 -837 4 1259 385 264 171 26 chr4 88348441 88348593 -67281527 + RLTR31_Mm LTR ERVK 519 692 0 4 1259 1060 238 64 85 chr4 88348593 88349076 -67281044 + RMER3D-int LTR ERVK 1 473 -2369 4 1259 7727 189 48 49 chr4 88349094 88350988 -67279132 + RMER3D-int LTR ERVK 949 2840 -2 4 1259 2296 160 15 10 chr4 88351000 88351410 -67278710 + RLTR31_Mm LTR ERVK 10 421 -140 4 1259 300 53 0 0 chr4 88352434 88352472 -67277648 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1259 254 50 0 24 chr4 88352472 88352513 -67277607 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1259 381 22 0 0 chr4 88353106 88353152 -67276968 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1259 243 0 0 0 chr4 88354751 88354778 -67275342 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1259 521 312 21 127 chr4 88354816 88354954 -67275166 - B4 SINE B4 -16 276 149 4 1259 1872 229 19 8 chr4 88354954 88355320 -67274800 + ORR1D2 LTR MaLR 1 370 0 4 1259 521 312 21 127 chr4 88355320 88355336 -67274784 - B4 SINE B4 -144 148 144 4 1259 1339 271 79 6 chr4 88355336 88355678 -67274442 - ORR1D2 LTR MaLR -1 369 3 4 1259 521 312 21 127 chr4 88355678 88355805 -67274315 - B4 SINE B4 -149 143 24 4 1259 1077 72 72 7 chr4 88355811 88355950 -67274170 + B1_Mus1 SINE Alu 1 148 0 4 1259 234 311 56 9 chr4 88355968 88356075 -67274045 - MER106B DNA MER1_type -625 434 323 4 1259 621 307 62 21 chr4 88356106 88356349 -67273771 - MER106B DNA MER1_type -797 262 10 4 1259 1112 219 24 19 chr4 88357144 88357354 -67272766 + B3 SINE B2 1 211 -5 4 1259 1219 75 0 7 chr4 88357876 88358024 -67272096 + B1_Mm SINE Alu 1 147 0 4 1259 232 300 85 85 chr4 88358046 88358199 -67271921 - RMER10B LTR ERVL -2 396 244 4 1259 3134 54 8 3 chr4 88358214 88358587 -67271533 - L1_Mus2 LINE L1 -4 6562 6188 4 1259 1005 53 45 0 chr4 88358587 88358719 -67271401 + L1_Mus2 LINE L1 6023 6160 -406 4 1259 717 255 153 31 chr4 88359561 88359816 -67270304 + B4A SINE B4 2 287 -5 4 1259 978 109 15 0 chr4 88359896 88360033 -67270087 + B1_Mus1 SINE Alu 10 148 0 4 1259 373 250 124 7 chr4 88360114 88360267 -67269853 + L1M2 LINE L1 4068 4238 -1905 4 1259 1173 63 35 0 chr4 88360697 88360840 -67269280 + B1_Mus1 SINE Alu 1 148 0 4 1259 230 21 62 21 chr4 88360840 88360888 -67269232 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 4 1259 546 78 0 0 chr4 88361568 88361645 -67268475 + B1_Mur4 SINE Alu 74 150 0 4 1259 571 241 58 29 chr4 88361662 88361800 -67268320 + B3 SINE B2 27 167 -49 4 1259 303 28 0 0 chr4 88361800 88361836 -67268284 + (CATA)n Simple_repeat Simple_repeat 4 39 0 4 1259 911 246 5 20 chr4 88361863 88362058 -67268062 + B4A SINE B4 97 288 -4 4 1259 358 300 0 0 chr4 88362065 88362165 -67267955 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1259 267 31 0 0 chr4 88362290 88362322 -67267798 + (TATG)n Simple_repeat Simple_repeat 4 35 0 4 1259 617 228 48 155 chr4 88362322 88362469 -67267651 - B3 SINE B2 -49 167 34 5 1259 1151 109 0 0 chr4 88362469 88362616 -67267504 - B1_Mus1 SINE Alu 0 148 2 5 1259 617 228 48 155 chr4 88362616 88362655 -67267465 - B3 SINE B2 -183 33 1 5 1259 341 284 37 0 chr4 88362907 88363016 -67267104 - PB1D10 SINE Alu 0 117 5 5 1259 1159 75 158 16 chr4 88363867 88364057 -67266063 + Lx2 LINE L1 6781 6997 0 5 1259 231 36 0 0 chr4 88365009 88365037 -67265083 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1259 215 156 22 22 chr4 88368439 88368485 -67261635 + G-rich Low_complexity Low_complexity 2 47 0 5 1259 723 179 271 12 chr4 88369920 88370090 -67260030 - B3 SINE B2 0 216 3 5 1259 1668 27 27 0 chr4 88370123 88370307 -67259813 + B2_Mm1t SINE B2 1 189 -4 5 1259 25 31 0 0 chr4 88370435 88370467 -67259653 + AT_rich Low_complexity Low_complexity 1 32 0 5 1259 1451 80 16 5 chr4 88370531 88370719 -67259401 - B2_Mm2 SINE B2 -4 191 2 5 1259 30 0 0 0 chr4 88370732 88370762 -67259358 + AT_rich Low_complexity Low_complexity 1 30 0 5 1259 402 229 0 118 chr4 88370842 88370961 -67259159 + MT2B LTR ERVL 160 264 -337 5 1259 877 169 0 0 chr4 88370855 88370991 -67259129 + B1_Mur4 SINE Alu 10 145 -5 5 1259 1924 113 59 92 chr4 88371800 88372171 -67257949 + ORR1B1 LTR MaLR 36 394 0 5 1259 973 230 170 11 chr4 88372473 88372750 -67257370 - ORR1D1 LTR MaLR 0 374 54 5 1259 612 289 39 10 chr4 88372749 88372952 -67257168 + ORR1D2 LTR MaLR 162 370 0 5 1259 6736 95 11 20 chr4 88374208 88375498 -67254622 + L1VL4 LINE L1 1 1275 -2284 5 1259 3251 86 7 0 chr4 88375477 88375931 -67254189 + L1VL4 LINE L1 2352 2808 -751 5 1259 2520 113 111 34 chr4 88375931 88376372 -67253748 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1259 6223 43 4 12 chr4 88376372 88377124 -67252996 - IAPEz-int LTR ERVK 0 6481 5736 5 1259 2261 61 0 0 chr4 88377123 88377401 -67252719 - IAPEz-int LTR ERVK -4845 1636 1359 5 1259 3667 60 1 16 chr4 88377401 88377979 -67252141 - IAPEz-int LTR ERVK -5819 662 168 5 1259 231 273 0 0 chr4 88377979 88378023 -67252097 - RLTR27 LTR ERVK -34 275 232 5 1259 312 53 0 0 chr4 88378023 88378061 -67252059 - IAPEz-int LTR ERVK -7400 181 144 5 1259 225 306 0 0 chr4 88378061 88378110 -67252010 - RLTR27 LTR ERVK -38 271 223 5 1259 268 0 0 0 chr4 88378110 88378139 -67251981 - IAPEz-int LTR ERVK -1785 202 174 5 1259 226 308 0 0 chr4 88378139 88378191 -67251929 - RLTR27 LTR ERVK -38 271 220 5 1259 382 117 18 153 chr4 88378191 88378302 -67251818 - IAPEz-int LTR ERVK -6369 112 17 5 1259 322 110 77 64 chr4 88378325 88378403 -67251717 - IAPEz-int LTR ERVK -1906 81 3 5 1259 2607 107 106 34 chr4 88378405 88378848 -67251272 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1259 16218 149 9 11 chr4 88378850 88382342 -67247778 + Lx LINE L1 3162 6650 -4 5 1259 21 36 0 0 chr4 88383056 88383084 -67247036 + AT_rich Low_complexity Low_complexity 1 28 0 5 1259 939 265 212 3 chr4 88383613 88383901 -67246219 - MTE2b LTR MaLR -4 375 28 5 1259 24 32 0 0 chr4 88384258 88384289 -67245831 + AT_rich Low_complexity Low_complexity 1 31 0 5 1259 739 237 120 5 chr4 88384476 88384667 -67245453 - B3 SINE B2 0 216 4 5 1259 987 295 30 60 chr4 88385116 88385484 -67244636 + MTEa LTR MaLR 5 361 -18 5 1259 946 119 18 18 chr4 88385736 88385899 -67244221 + URR1A DNA MER1_type 59 221 -5 5 1259 362 273 86 21 chr4 88385751 88385938 -67244182 - CYRA11_Mm Unknown Y-chromosome -289 328 130 5 1259 1325 41 0 0 chr4 88387131 88387278 -67242842 + B1_Mus2 SINE Alu 1 147 0 5 1259 216 86 0 0 chr4 88387282 88387317 -67242803 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1259 1309 54 0 0 chr4 88387821 88387968 -67242152 + B1_Mus1 SINE Alu 1 147 -1 5 1259 1396 137 113 64 chr4 88387979 88388306 -67241814 - RLTR28 LTR ERVL -37 487 145 5 1259 257 346 0 46 chr4 88388403 88388512 -67241608 + G-rich Low_complexity Low_complexity 6 109 0 5 1259 28 0 0 0 chr4 88389982 88390010 -67240110 + AT_rich Low_complexity Low_complexity 1 28 0 5 1259 296 146 0 0 chr4 88390527 88390575 -67239545 + RLTR13D5 LTR ERVK 1 48 -975 5 1259 5021 63 30 3 chr4 88390564 88391263 -67238857 + RLTR13D5 LTR ERVK 306 1023 0 5 1259 3204 211 74 71 chr4 88391670 88392820 -67237300 - RMER12 LTR ERVK -6 1842 194 5 1259 252 0 0 0 chr4 88392820 88392848 -67237272 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1259 891 188 196 38 chr4 88392848 88392993 -67237127 - RMER12 LTR ERVK -1656 192 3 5 1259 689 0 12 0 chr4 88393043 88393124 -67236996 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 1259 2567 145 23 16 chr4 88393385 88393638 -67236482 - RMER6-int LTR ERVK -2544 633 380 5 1259 4027 95 9 21 chr4 88393638 88394208 -67235912 - RMER2 LTR ERV1 -4 563 1 5 1259 2567 145 23 16 chr4 88394208 88394438 -67235682 - RMER6-int LTR ERVK -2798 379 148 5 1259 1560 114 12 0 chr4 88394438 88394684 -67235436 - RMER6A LTR ERVK -507 249 1 5 1259 261 119 0 0 chr4 88395265 88395307 -67234813 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 5 1259 208 281 18 0 chr4 88395407 88395464 -67234656 + CT-rich Low_complexity Low_complexity 4 61 0 5 1259 18965 125 20 9 chr4 88395906 88398888 -67231232 + L1VL1 LINE L1 365 3388 -2495 5 1259 4276 70 31 7 chr4 88398888 88399435 -67230685 + LTRIS2 LTR ERV1 5 564 0 5 1259 18965 117 4 4 chr4 88399435 88400345 -67229775 + L1VL1 LINE L1 3389 4294 -1589 5 1259 723 294 123 53 chr4 88402145 88402428 -67227692 - RLTR11A2 LTR ERVK -79 448 148 5 1259 455 17 34 0 chr4 88402428 88402487 -67227633 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 5 1259 723 294 123 53 chr4 88402487 88402616 -67227504 - RLTR11A2 LTR ERVK -380 147 7 5 1259 220 152 15 15 chr4 88403236 88403303 -67226817 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 719 312 49 73 chr4 88405118 88405571 -67224549 - RLTR11A2 LTR ERVK -79 448 7 5 1259 216 167 0 0 chr4 88406218 88406266 -67223854 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 5 1259 842 301 65 147 chr4 88407948 88408506 -67221614 - RLTR11A2 LTR ERVK -9 518 7 5 1259 239 167 15 0 chr4 88409135 88409201 -67220919 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 3310 55 0 130 chr4 88410110 88410611 -67219509 - RLTR10C LTR ERVK 0 436 1 5 1259 19793 19 0 21 chr4 88410611 88413012 -67217108 - MMERVK10C-int LTR ERVK 0 7581 5231 5 1259 23327 18 1 1 chr4 88413007 88415815 -67214305 - MMERVK10C-int LTR ERVK -2291 5290 1885 5 1259 295 228 0 0 chr4 88415820 88415877 -67214243 - MMERVK10C-int LTR ERVK -5143 994 938 5 1259 715 209 224 45 chr4 88415880 88416268 -67213852 - MMERVK10C-int LTR ERVK -4795 611 291 5 1259 840 148 4 177 chr4 88416340 88416611 -67213509 - MMERVK10C-int LTR ERVK -6629 952 729 5 1259 2727 61 0 0 chr4 88416609 88416952 -67213168 - MMERVK10C-int LTR ERVK -7238 343 1 5 1259 3387 48 0 130 chr4 88416952 88417453 -67212667 - RLTR10C LTR ERVK 0 436 1 5 1259 786 311 65 142 chr4 88418236 88418791 -67211329 - RLTR11A2 LTR ERVK -9 518 7 5 1259 239 167 15 0 chr4 88419420 88419486 -67210634 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 829 314 70 104 chr4 88421159 88421562 -67208558 - RLTR11A2 LTR ERVK -9 518 134 5 1259 192 40 0 0 chr4 88421562 88421587 -67208533 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1259 829 314 70 104 chr4 88421587 88421713 -67208407 - RLTR11A2 LTR ERVK -394 133 8 5 1259 205 56 0 77 chr4 88421717 88421756 -67208364 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 5 1259 239 167 15 0 chr4 88422348 88422414 -67207706 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 825 314 70 104 chr4 88424087 88424490 -67205630 - RLTR11A2 LTR ERVK -9 518 134 5 1259 192 40 0 0 chr4 88424490 88424515 -67205605 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1259 825 314 70 104 chr4 88424515 88424641 -67205479 - RLTR11A2 LTR ERVK -394 133 8 5 1259 205 56 0 77 chr4 88424645 88424684 -67205436 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 5 1259 239 167 15 0 chr4 88425276 88425342 -67204778 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 791 300 65 145 chr4 88427020 88427577 -67202543 - RLTR11A2 LTR ERVK -9 518 7 5 1259 205 56 0 77 chr4 88427581 88427620 -67202500 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 5 1259 216 167 0 0 chr4 88428230 88428278 -67201842 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 5 1259 786 308 69 138 chr4 88429956 88430506 -67199614 - RLTR11A2 LTR ERVK -9 518 7 5 1259 239 167 15 0 chr4 88431135 88431201 -67198919 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 786 308 69 138 chr4 88432879 88433429 -67196691 - RLTR11A2 LTR ERVK -9 518 7 5 1259 239 167 15 0 chr4 88434058 88434124 -67195996 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 778 296 82 100 chr4 88435897 88436347 -67193773 - RLTR11A2 LTR ERVK -79 448 7 5 1259 239 167 15 0 chr4 88436976 88437042 -67193078 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 777 290 77 108 chr4 88438828 88439284 -67190836 - RLTR11A2 LTR ERVK -79 448 7 5 1259 239 167 15 0 chr4 88439913 88439979 -67190141 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 786 308 69 138 chr4 88441644 88442194 -67187926 - RLTR11A2 LTR ERVK -9 518 7 5 1259 239 167 15 0 chr4 88442823 88442889 -67187231 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 620 290 77 108 chr4 88444661 88445117 -67185003 - RLTR11A2 LTR ERVK -79 448 7 5 1259 239 167 15 0 chr4 88445746 88445812 -67184308 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 671 279 105 77 chr4 88447597 88447900 -67182220 - RLTR11A2 LTR ERVK -79 448 141 5 1259 192 40 0 0 chr4 88447900 88447925 -67182195 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1259 671 279 105 77 chr4 88447925 88448051 -67182069 - RLTR11A2 LTR ERVK -387 140 7 5 1259 239 167 15 0 chr4 88448680 88448746 -67181374 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 595 299 82 102 chr4 88450532 88450983 -67179137 - RLTR11A2 LTR ERVK -79 448 7 5 1259 239 167 15 0 chr4 88451612 88451678 -67178442 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 5 1259 233 300 67 0 chr4 88453914 88454064 -67176056 - L1MA6 LINE L1 -19 6281 6122 5 1259 722 304 166 3 chr4 88455606 88455896 -67174224 + MTE2b LTR MaLR 7 343 -36 5 1259 456 19 0 0 chr4 88455896 88455949 -67174171 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1259 1591 269 79 119 chr4 88456039 88456368 -67173752 + MTE-int LTR MaLR 27 371 -1209 5 1259 3880 170 96 15 chr4 88456368 88457157 -67172963 + RMER13A LTR ERVK 4 856 -4 5 1259 1591 269 79 119 chr4 88457157 88457676 -67172444 + MTE-int LTR MaLR 372 841 -739 5 1259 2146 140 56 6 chr4 88457679 88458039 -67172081 - ORR1C1 LTR MaLR 0 378 1 5 1259 667 103 16 72 chr4 88458039 88458164 -67171956 - ORR1C1-int LTR MaLR 0 1509 1392 5 1259 1553 114 4 8 chr4 88458164 88458411 -67171709 - L1_Mur2 LINE L1 -483 5394 5149 5 1259 6474 106 77 24 chr4 88458408 88458961 -67171159 + Lx LINE L1 5397 5961 -693 5 1259 1427 81 5 0 chr4 88458961 88459147 -67170973 + B2_Mm1t SINE B2 2 188 -5 5 1259 6474 91 75 36 chr4 88459147 88459811 -67170309 + Lx LINE L1 5962 6654 0 5 1259 704 144 28 20 chr4 88459822 88460005 -67170115 - ORR1C1-int LTR MaLR -104 1405 1070 5 1259 207 0 0 0 chr4 88460668 88460691 -67169429 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1259 798 100 0 0 chr4 88460691 88460830 -67169290 + (GA)n Simple_repeat Simple_repeat 2 141 0 5 1259 288 53 0 0 chr4 88461673 88461711 -67168409 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1259 225 94 0 0 chr4 88461984 88462016 -67168104 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1259 192 40 0 0 chr4 88462884 88462909 -67167211 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 1259 243 299 41 10 chr4 88463275 88463373 -67166747 - L1MA6 LINE L1 -240 6060 5960 5 1259 776 247 5 5 chr4 88463675 88463735 -67166385 + RMER12 LTR ERVK 1 60 -1262 5 1259 194 0 0 37 chr4 88463735 88463762 -67166358 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1259 776 247 5 5 chr4 88463762 88463888 -67166232 + RMER12 LTR ERVK 61 186 -1136 5 1259 255 247 0 0 chr4 88464012 88464101 -67166019 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1259 403 335 3 3 chr4 88464128 88464438 -67165682 + (TG)n Simple_repeat Simple_repeat 1 310 0 6 1259 273 279 4 7 chr4 88464556 88464832 -67165288 + (TG)n Simple_repeat Simple_repeat 1 275 0 6 1259 243 0 0 0 chr4 88464832 88464859 -67165261 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1259 528 219 93 8 chr4 88465230 88465359 -67164761 - B1_Mus2 SINE Alu -5 142 3 6 1259 23 0 0 0 chr4 88465434 88465457 -67164663 + AT_rich Low_complexity Low_complexity 1 23 0 6 1259 294 95 0 0 chr4 88466615 88466657 -67163463 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1259 23 105 0 0 chr4 88466679 88466765 -67163355 + AT_rich Low_complexity Low_complexity 1 86 0 6 1259 262 301 38 60 chr4 88466967 88467151 -67162969 - L1MA7 LINE L1 -202 6089 5910 6 1259 234 128 0 0 chr4 88467397 88467436 -67162684 + (TCC)n Simple_repeat Simple_repeat 2 40 0 6 1259 574 311 89 16 chr4 88467475 88467779 -67162341 - Lx8 LINE L1 -175 7298 6973 6 1259 287 195 17 50 chr4 88468920 88469039 -67161081 + GA-rich Low_complexity Low_complexity 2 116 0 6 1259 239 309 89 33 chr4 88469452 88469723 -67160397 + RMER5 LTR ERV1 238 523 -11 6 1259 419 290 30 8 chr4 88470698 88470830 -67159290 + B4A SINE B4 158 292 0 6 1259 1089 285 25 7 chr4 88470849 88471256 -67158864 - L1_Mur3 LINE L1 -822 5058 4645 6 1259 268 257 14 0 chr4 88471420 88471494 -67158626 - B4A SINE B4 -65 227 153 6 1259 563 242 171 139 chr4 88471495 88471970 -67158150 + MT2A LTR ERVL 1 490 -43 6 1259 368 125 28 0 chr4 88471976 88472048 -67158072 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 6 1259 418 164 7 14 chr4 88472057 88472117 -67158003 + (CAGAGA)n Simple_repeat Simple_repeat 4 63 0 6 1259 870 133 0 0 chr4 88472117 88472290 -67157830 + (GA)n Simple_repeat Simple_repeat 2 174 0 6 1259 418 164 7 14 chr4 88472290 88472371 -67157749 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 6 1259 31 0 0 0 chr4 88472563 88472594 -67157526 + AT_rich Low_complexity Low_complexity 1 31 0 6 1259 1000 98 0 7 chr4 88472654 88472798 -67157322 - B1_Mm SINE Alu -2 145 3 6 1260 188 35 35 0 chr4 88474072 88474101 -67156019 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 1260 345 100 0 0 chr4 88474815 88474865 -67155255 + (TCC)n Simple_repeat Simple_repeat 3 52 0 6 1260 362 340 95 26 chr4 88474895 88475200 -67154920 - Lx8 LINE L1 -175 7298 6973 6 1260 302 277 84 0 chr4 88475393 88475512 -67154608 - L1M2 LINE L1 -1485 4658 4530 6 1260 208 230 33 33 chr4 88475938 88476028 -67154092 + (TA)n Simple_repeat Simple_repeat 1 90 0 6 1260 418 0 53 0 chr4 88476211 88476268 -67153852 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1260 292 263 13 0 chr4 88476407 88476483 -67153637 + A-rich Low_complexity Low_complexity 2 78 0 6 1260 192 97 0 0 chr4 88476486 88476517 -67153603 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 6 1260 234 191 21 0 chr4 88476525 88476572 -67153548 + GA-rich Low_complexity Low_complexity 1 48 0 6 1260 385 322 70 11 chr4 88476968 88477238 -67152882 + RMER5 LTR ERV1 238 523 -11 6 1260 21 0 0 0 chr4 88477688 88477709 -67152411 + AT_rich Low_complexity Low_complexity 1 21 0 6 1260 384 305 30 8 chr4 88478153 88478285 -67151835 + B4A SINE B4 158 292 0 6 1260 566 269 91 130 chr4 88478298 88478729 -67151391 - L1_Mur3 LINE L1 -822 5058 4645 6 1260 283 285 75 23 chr4 88478831 88478964 -67151156 - B4A SINE B4 0 292 153 6 1260 479 262 178 143 chr4 88478965 88479442 -67150678 + MT2A LTR ERVL 1 494 -39 6 1260 537 183 0 0 chr4 88479443 88479547 -67150573 + (CA)n Simple_repeat Simple_repeat 1 104 0 6 1260 238 371 42 7 chr4 88479616 88479760 -67150360 - B4 SINE B4 -138 154 6 6 1260 24 32 0 0 chr4 88480680 88480711 -67149409 + AT_rich Low_complexity Low_complexity 1 31 0 6 1260 997 103 0 14 chr4 88480759 88480906 -67149214 - B1_Mm SINE Alu 0 147 3 6 1260 219 69 0 0 chr4 88482188 88482217 -67147903 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 1260 1111 82 14 0 chr4 88482596 88482742 -67147378 - B1_Mus1 SINE Alu 0 148 1 6 1260 675 0 0 0 chr4 88483136 88483211 -67146909 + (TCC)n Simple_repeat Simple_repeat 1 75 0 6 1260 306 351 108 10 chr4 88483228 88483533 -67146587 - Lx8 LINE L1 -166 7307 6973 6 1260 183 129 0 0 chr4 88484335 88484366 -67145754 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 6 1260 237 185 18 18 chr4 88484715 88484770 -67145350 + GA-rich Low_complexity Low_complexity 3 57 0 6 1260 251 148 37 0 chr4 88484791 88484845 -67145275 + GA-rich Low_complexity Low_complexity 4 59 0 6 1260 325 294 88 37 chr4 88485278 88485550 -67144570 + RMER5 LTR ERV1 238 523 -11 6 1260 4750 127 31 3 chr4 88486406 88487283 -67142837 - L1VL2 LINE L1 -2489 1126 220 6 1260 306 73 0 0 chr4 88488515 88488556 -67141564 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 6 1260 234 0 0 0 chr4 88488703 88488729 -67141391 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1260 1267 34 0 0 chr4 88488731 88488877 -67141243 - B1_Mm SINE Alu -1 146 1 6 1260 336 48 0 0 chr4 88489467 88489509 -67140611 + (TCC)n Simple_repeat Simple_repeat 2 43 0 6 1260 507 324 86 21 chr4 88489552 88489842 -67140278 - Lx8 LINE L1 -192 7281 6973 6 1260 243 297 19 25 chr4 88490574 88490733 -67139387 + (TA)n Simple_repeat Simple_repeat 1 158 0 6 1260 21 0 0 0 chr4 88490918 88490939 -67139181 + AT_rich Low_complexity Low_complexity 1 21 0 6 1260 783 141 20 10 chr4 88491083 88491378 -67138742 + GA-rich Low_complexity Low_complexity 1 298 0 6 1260 326 307 43 6 chr4 88491840 88492004 -67138116 + RMER5 LTR ERV1 354 523 -11 6 1260 1221 269 20 10 chr4 88493115 88493510 -67136610 - L1_Mur3 LINE L1 -837 5043 4645 6 1260 377 210 74 34 chr4 88493730 88493863 -67136257 + MT2A LTR ERVL 3 130 -471 6 1260 505 292 257 7 chr4 88493875 88494171 -67135949 + MT2A LTR ERVL 87 456 -77 6 1260 244 335 70 32 chr4 88494273 88494430 -67135690 - B4 SINE B4 -123 169 7 6 1260 638 75 11 0 chr4 88495127 88495220 -67134900 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 1260 32 0 0 0 chr4 88495568 88495600 -67134520 + AT_rich Low_complexity Low_complexity 1 32 0 6 1260 318 143 0 0 chr4 88496717 88496780 -67133340 + (TATG)n Simple_repeat Simple_repeat 2 64 0 6 1260 22 0 0 0 chr4 88496902 88496924 -67133196 + AT_rich Low_complexity Low_complexity 1 22 0 6 1260 2332 206 15 39 chr4 88497154 88497690 -67132430 - RLTR28 LTR ERVL 0 524 2 6 1260 4108 112 41 5 chr4 88498055 88498663 -67131457 - Lx2 LINE L1 -2 6995 6366 6 1260 3820 117 43 30 chr4 88498662 88499316 -67130804 - Lx2 LINE L1 -784 6213 5623 6 1260 1146 115 0 0 chr4 88499316 88499490 -67130630 + (TCTCC)n Simple_repeat Simple_repeat 5 178 0 6 1260 1168 57 0 0 chr4 88499490 88499631 -67130489 - B1_Mus1 SINE Alu -6 142 2 6 1260 2336 146 8 0 chr4 88499631 88500000 -67130120 - Lx2 LINE L1 -249 5634 5263 6 1260 11397 148 23 24 chr4 88500010 88502048 -67128072 - L1_Mur2 LINE L1 -623 5254 3219 1 1260 2599 178 31 20 chr4 88502041 88502528 -67127592 - L1VL4 LINE L1 -5494 808 317 2 1260 3216 76 5 2 chr4 88502767 88503164 -67126956 + MTB LTR MaLR 3 400 0 3 1260 21 0 0 0 chr4 88504827 88504848 -67125272 + AT_rich Low_complexity Low_complexity 1 21 0 4 1260 2210 188 22 5 chr4 88504974 88505380 -67124740 + MTC LTR MaLR 1 413 -8 5 1260 582 212 14 62 chr4 88505498 88505644 -67124476 - B1_Mur2 SINE Alu -2 147 9 6 1260 227 241 111 79 chr4 88506567 88506630 -67123490 + B4A SINE B4 223 287 -5 7 1260 949 17 17 0 chr4 88507401 88507520 -67122600 + (TTCTC)n Simple_repeat Simple_repeat 2 122 0 8 1260 825 148 148 0 chr4 88507951 88508079 -67122041 - B1_Mus1 SINE Alu -1 147 1 9 1260 233 131 43 21 chr4 88508647 88508694 -67121426 - ORR1D2 LTR MaLR -4 366 319 1 1260 1140 226 139 49 chr4 88508661 88509029 -67121091 - MTD LTR MaLR -18 401 1 1 1260 342 0 0 0 chr4 88509073 88509111 -67121009 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 1 1260 2759 178 53 62 chr4 88509444 88510355 -67119765 + RLTR13D1 LTR ERVK 1 855 0 1 1260 25 51 0 0 chr4 88511649 88511688 -67118432 + AT_rich Low_complexity Low_complexity 1 39 0 1 1260 690 13 0 0 chr4 88513285 88513364 -67116756 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1260 292 352 11 21 chr4 88513634 88513727 -67116393 + RSINE1 SINE B4 70 161 -4 1 1260 189 74 0 0 chr4 88514359 88514386 -67115734 + (C)n Simple_repeat Simple_repeat 1 27 0 1 1260 269 26 0 26 chr4 88514753 88514792 -67115328 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1260 576 47 163 0 chr4 88514792 88514878 -67115242 - B1_Mm SINE Alu -8 139 40 1 1260 1324 250 46 108 chr4 88514859 88514900 -67115220 - RLTR31_Mm LTR ERVK -71 513 473 2 1260 4006 134 35 33 chr4 88514900 88515563 -67114557 - Lx LINE L1 -5 6649 5986 2 1260 2325 145 56 51 chr4 88515563 88515972 -67114148 - RLTR31_Mm LTR ERVK -112 472 87 2 1260 315 0 0 0 chr4 88515972 88516007 -67114113 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1260 333 0 0 0 chr4 88516007 88516043 -67114077 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1260 2325 128 58 42 chr4 88516043 88516137 -67113983 - RLTR31_Mm LTR ERVK -468 93 2 2 1260 4199 186 56 53 chr4 88516139 88517221 -67112899 - RMER3D-int LTR ERVK -2 2840 1755 2 1260 857 181 191 0 chr4 88517255 88517443 -67112677 + MTD LTR MaLR 196 419 0 2 1260 456 279 15 94 chr4 88518089 88518291 -67111829 - Lx9 LINE L1 -505 7139 6954 2 1260 651 259 0 0 chr4 88518484 88518615 -67111505 + B1_Mur1 SINE Alu 3 133 -16 2 1260 407 218 0 18 chr4 88518617 88518729 -67111391 + GA-rich Low_complexity Low_complexity 3 112 0 2 1260 1647 226 91 18 chr4 88519839 88520223 -67109897 - Lx6 LINE L1 -72 7388 6977 2 1260 497 232 55 29 chr4 88520457 88520645 -67109475 - B3A SINE B2 -10 185 3 2 1260 180 0 0 0 chr4 88520990 88521010 -67109110 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1260 1124 250 70 129 chr4 88521429 88521989 -67108131 + Lx9 LINE L1 6881 7407 -237 3 1260 259 248 89 27 chr4 88522012 88522124 -67107996 + Lx9 LINE L1 7506 7624 -20 3 1260 195 42 0 0 chr4 88523298 88523322 -67106798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1260 864 173 14 28 chr4 88523322 88523465 -67106655 - B1_Mur4 SINE Alu -9 141 1 3 1260 190 250 43 145 chr4 88523611 88523728 -67106392 + MIRc SINE MIR 40 144 -124 3 1260 252 258 214 23 chr4 88524984 88525115 -67105005 - L1MC LINE L1 -2424 5458 5303 3 1260 2182 120 88 0 chr4 88527084 88527426 -67102694 - ORR1B1 LTR MaLR -22 372 1 3 1260 23 78 0 0 chr4 88528061 88528112 -67102008 + AT_rich Low_complexity Low_complexity 1 51 0 3 1260 603 331 51 62 chr4 88528130 88528484 -67101636 + ORR1E LTR MaLR 3 352 -7 3 1260 576 0 0 0 chr4 88528484 88528548 -67101572 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 1260 713 259 184 13 chr4 88528555 88528942 -67101178 - L1MA6 LINE L1 -34 6266 5814 4 1260 778 290 6 0 chr4 88529010 88529172 -67100948 - B3A SINE B2 -30 168 6 4 1260 971 217 105 0 chr4 88529209 88529467 -67100653 - L1MA6 LINE L1 -483 5817 5533 4 1260 373 272 172 16 chr4 88529523 88529773 -67100347 - L1MD LINE L1 -3275 2871 2583 4 1260 886 34 0 17 chr4 88529788 88529908 -67100212 + L1Md_F3 LINE L1 6453 6570 -14 4 1260 252 59 0 0 chr4 88529929 88529963 -67100157 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1260 629 85 9 0 chr4 88529963 88530069 -67100051 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 1260 383 323 136 52 chr4 88530111 88530493 -67099627 - L1M5 LINE L1 -3590 2556 2143 4 1260 417 293 73 20 chr4 88530647 88530797 -67099323 - Zaphod DNA Tip100 -3459 572 415 4 1260 301 137 0 0 chr4 88531209 88531260 -67098860 + L1_Mur1 LINE L1 4747 4797 -1089 4 1260 407 136 115 19 chr4 88531252 88531355 -67098765 + Lx LINE L1 6534 6634 -2 4 1260 10322 56 18 2 chr4 88531452 88533428 -67096692 - L1Md_F2 LINE L1 -8 6574 4562 5 1260 190 156 0 0 chr4 88533851 88533883 -67096237 - L3 LINE CR1 -6 4483 4452 5 1260 267 211 105 0 chr4 88534105 88534181 -67095939 + L1MC4 LINE L1 7560 7643 -399 5 1260 338 344 48 0 chr4 88534675 88534800 -67095320 + MIR SINE MIR 50 180 -82 5 1260 299 319 11 0 chr4 88536587 88536681 -67093439 - MIR SINE MIR -66 196 102 5 1260 339 25 0 0 chr4 88536794 88536834 -67093286 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1260 896 240 11 6 chr4 88537750 88537926 -67092194 + B3A SINE B2 1 177 -21 5 1260 21 36 0 0 chr4 88538654 88538682 -67091438 + AT_rich Low_complexity Low_complexity 1 28 0 5 1260 257 51 26 0 chr4 88538866 88538905 -67091215 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 1260 421 118 32 32 chr4 88540498 88540621 -67089499 + (CA)n Simple_repeat Simple_repeat 1 123 0 5 1260 306 151 0 36 chr4 88540633 88540688 -67089432 + HAL1-3A_ME LINE L1 1977 2029 -829 6 1260 459 291 35 36 chr4 88540936 88541087 -67089033 - B4A SINE B4 -74 218 60 6 1260 202 208 0 40 chr4 88541129 88541179 -67088941 + T-rich Low_complexity Low_complexity 2 49 0 6 1260 185 154 26 0 chr4 88541180 88541219 -67088901 + CT-rich Low_complexity Low_complexity 4 43 0 6 1260 478 272 88 0 chr4 88541226 88541351 -67088769 - ID_B1 SINE B4 -3 221 86 6 1260 245 347 13 0 chr4 88541462 88541537 -67088583 + ID4_ SINE ID 1 76 -7 6 1260 749 210 66 28 chr4 88541619 88541800 -67088320 + B2_Mm2 SINE B2 1 188 -7 6 1260 238 242 0 16 chr4 88542407 88542470 -67087650 + (TTA)n Simple_repeat Simple_repeat 2 63 0 6 1260 424 254 174 42 chr4 88542497 88542641 -67087479 - RSINE1 SINE B4 0 165 3 6 1260 6672 68 8 7 chr4 88542675 88543537 -67086583 - L1Md_F2 LINE L1 0 6582 5720 6 1260 387 0 0 0 chr4 88545399 88545442 -67084678 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 7 1260 512 260 98 0 chr4 88545442 88545565 -67084555 - B1_Mur1 SINE Alu -13 136 2 7 1260 1600 249 24 5 chr4 88546016 88546388 -67083732 + MTEa LTR MaLR 1 379 0 7 1260 1687 243 50 5 chr4 88546388 88546785 -67083335 + MTEa-int LTR MaLR 1 415 -1165 7 1260 236 256 190 29 chr4 88546834 88546971 -67083149 - Lx8 LINE L1 -2 7471 7313 7 1260 256 221 43 29 chr4 88546974 88547044 -67083076 + MTEa-int LTR MaLR 417 487 -1093 7 1260 1026 103 121 0 chr4 88547312 88547486 -67082634 + L1Md_F2 LINE L1 6387 6581 -1 7 1260 617 329 23 37 chr4 88547522 88547737 -67082383 + Lx8 LINE L1 6190 6401 -1072 7 1260 935 252 98 24 chr4 88547737 88548034 -67082086 + MTEa-int LTR MaLR 1262 1580 0 7 1260 1286 236 154 18 chr4 88548044 88548381 -67081739 - MTD LTR MaLR -16 403 21 7 1260 1061 242 84 76 chr4 88548380 88548737 -67081383 + MTEa LTR MaLR 8 367 -12 7 1260 273 163 0 0 chr4 88549344 88549393 -67080727 + A-rich Low_complexity Low_complexity 1 49 0 7 1260 358 229 16 99 chr4 88549591 88549712 -67080408 + MT2B LTR ERVL 154 264 -337 7 1260 751 182 30 0 chr4 88549605 88549737 -67080383 + B1_Mur1 SINE Alu 6 141 -8 7 1260 253 273 87 43 chr4 88550240 88550332 -67079788 - B4A SINE B4 -13 279 184 8 1260 300 275 0 71 chr4 88550361 88550397 -67079723 - B4A SINE B4 -200 92 62 8 1260 1050 0 52 17 chr4 88550397 88550570 -67079550 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1260 300 275 0 71 chr4 88550570 88550631 -67079489 - B4A SINE B4 -231 61 2 8 1260 6275 33 0 0 chr4 88551101 88551796 -67078324 - L1Md_A LINE L1 0 6582 5888 8 1260 254 233 50 0 chr4 88552702 88552762 -67077358 - ID4 SINE ID -16 67 5 8 1260 249 287 6 189 chr4 88552764 88552923 -67077197 - ID_B1 SINE B4 -38 186 57 8 1260 475 368 53 0 chr4 88553176 88553328 -67076792 - RSINE1 SINE B4 -5 160 1 8 1260 248 336 32 65 chr4 88553478 88553602 -67076518 - MIRc SINE MIR -147 121 2 8 1260 300 412 7 13 chr4 88554154 88554309 -67075811 + MER5A DNA MER1_type 6 159 -30 8 1260 240 143 0 0 chr4 88554608 88554664 -67075456 + (A)n Simple_repeat Simple_repeat 1 56 0 8 1260 261 0 0 0 chr4 88555059 88555088 -67075032 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1260 254 305 73 25 chr4 88556280 88556451 -67073669 - L2a LINE L2 -384 3035 2845 9 1260 319 340 0 36 chr4 88557079 88557189 -67072931 + L1MC LINE L1 5688 5793 -2089 9 1260 568 254 216 67 chr4 88558180 88558509 -67071611 - MTE2b LTR MaLR -1 378 1 9 1260 195 344 108 0 chr4 88560816 88560909 -67069211 + MIRb SINE MIR 102 204 -64 9 1260 421 303 19 111 chr4 88561051 88561259 -67068861 + MLT1A LTR MaLR 3 191 -183 9 1260 216 255 255 0 chr4 88561929 88561980 -67068140 + B1F SINE Alu 1 64 -85 9 1260 233 208 145 53 chr4 88561949 88562025 -67068095 + PB1D10 SINE Alu 34 116 -1 9 1260 254 122 14 29 chr4 88562197 88562266 -67067854 - L1_Mus2 LINE L1 0 6582 6511 9 1260 1346 93 5 5 chr4 88562913 88563118 -67067002 + L1_Mus4 LINE L1 6432 6636 0 9 1260 315 0 0 0 chr4 88564810 88564845 -67065275 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1260 232 286 110 37 chr4 88565458 88565567 -67064553 + MamRep38 DNA hAT 153 269 -26 1 1260 528 271 56 7 chr4 88565731 88565951 -67064169 - MER44D DNA MER2_type -89 250 12 1 1260 2197 109 0 73 chr4 88566218 88566573 -67063547 - ORR1A4 LTR MaLR 0 329 1 1 1260 436 242 11 0 chr4 88566863 88566954 -67063166 + ID_B1 SINE B4 123 214 -10 1 1260 408 208 0 0 chr4 88568135 88568212 -67061908 - ID4_ SINE ID -2 81 5 1 1260 440 225 124 8 chr4 88568768 88568889 -67061231 - B1F SINE Alu -12 137 3 1 1260 1039 230 153 40 chr4 88569146 88569544 -67060576 + RCHARR1 DNA MER1_type 524 966 -8 1 1260 715 267 46 43 chr4 88569690 88569972 -67060148 + Lx9 LINE L1 7135 7417 -227 1 1260 1157 55 0 7 chr4 88570251 88570398 -67059722 + B1_Mm SINE Alu 1 146 -1 1 1260 1519 165 134 21 chr4 88571739 88572068 -67058052 + ORR1D1 LTR MaLR 1 366 -8 1 1260 627 142 85 0 chr4 88572815 88572921 -67057199 + BC1_Mm scRNA scRNA 5 119 -33 1 1260 201 74 0 0 chr4 88572939 88572966 -67057154 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1260 215 274 96 78 chr4 88573445 88573560 -67056560 + MIRm SINE MIR 159 275 -1 1 1260 225 289 46 46 chr4 88574825 88574912 -67055208 + MIR SINE MIR 132 218 -44 1 1260 688 257 0 0 chr4 88574948 88575084 -67055036 - B3 SINE B2 -38 178 43 1 1260 393 39 0 0 chr4 88575370 88575421 -67054699 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1260 714 328 20 24 chr4 88575447 88575697 -67054423 - B4A SINE B4 0 292 44 1 1260 21 36 0 0 chr4 88576487 88576515 -67053605 + AT_rich Low_complexity Low_complexity 1 28 0 1 1260 395 192 24 71 chr4 88576515 88576599 -67053521 - B4 SINE B4 -212 80 1 1 1260 518 252 181 30 chr4 88576599 88576869 -67053251 - Charlie4a DNA MER1_type -181 327 17 1 1260 332 273 104 48 chr4 88577008 88577227 -67052893 - MIR SINE MIR -10 258 24 1 1260 23 54 0 0 chr4 88577758 88577795 -67052325 + AT_rich Low_complexity Low_complexity 1 37 0 1 1260 591 259 60 26 chr4 88578125 88578276 -67051844 - RSINE1 SINE B4 -1 164 9 1 1260 24 32 0 0 chr4 88579904 88579935 -67050185 + AT_rich Low_complexity Low_complexity 1 31 0 1 1260 594 0 0 0 chr4 88579956 88580022 -67050098 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1260 216 280 0 0 chr4 88580219 88580269 -67049851 - ID4 SINE ID -1 82 33 1 1260 231 36 0 0 chr4 88580947 88580975 -67049145 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1260 357 24 0 0 chr4 88580975 88581016 -67049104 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1260 202 61 0 57 chr4 88582083 88582118 -67048002 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1260 31 0 0 0 chr4 88583604 88583635 -67046485 + AT_rich Low_complexity Low_complexity 1 31 0 1 1260 200 150 0 62 chr4 88584401 88584465 -67045655 + (CCCCG)n Simple_repeat Simple_repeat 3 62 0 1 1260 434 291 102 0 chr4 88587084 88587211 -67042909 + RSINE1 SINE B4 3 142 -23 1 1260 270 0 0 0 chr4 88587227 88587257 -67042863 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1260 28 0 0 0 chr4 88587275 88587303 -67042817 + AT_rich Low_complexity Low_complexity 1 28 0 1 1260 185 65 32 0 chr4 88588893 88588924 -67041196 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1260 389 131 12 0 chr4 88589393 88589477 -67040643 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1260 342 0 0 0 chr4 88589844 88589882 -67040238 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1260 652 167 61 0 chr4 88590073 88590187 -67039933 + B1_Mur1 SINE Alu 29 149 0 1 1260 852 228 41 9 chr4 88590782 88591003 -67039117 + Lx8 LINE L1 6908 7135 -338 1 1260 423 0 0 0 chr4 88591606 88591653 -67038467 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1260 23 54 0 0 chr4 88592347 88592384 -67037736 + AT_rich Low_complexity Low_complexity 1 37 0 1 1260 809 254 58 21 chr4 88593695 88593884 -67036236 + B3 SINE B2 14 209 -7 1 1260 194 336 133 0 chr4 88594089 88594202 -67035918 - MIR SINE MIR -54 208 81 1 1260 202 308 19 0 chr4 88597861 88597913 -67032207 - L2 LINE L2 -530 2889 2837 1 1260 320 265 58 48 chr4 88598587 88598690 -67031430 + PB1D10 SINE Alu 14 117 0 1 1260 216 0 0 0 chr4 88598847 88598871 -67031249 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1 1260 530 15 15 0 chr4 88598871 88598938 -67031182 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1260 21 0 0 0 chr4 88598938 88598959 -67031161 + AT_rich Low_complexity Low_complexity 1 21 0 1 1260 468 0 0 0 chr4 88599612 88599664 -67030456 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1260 351 0 0 0 chr4 88603322 88603361 -67026759 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1260 466 29 0 29 chr4 88603581 88603651 -67026469 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 1 1260 1129 45 0 0 chr4 88603651 88603785 -67026335 - B1_Mm SINE Alu -13 134 1 1 1260 1244 86 0 4 chr4 88603946 88604218 -67025902 + (GGAA)n Simple_repeat Simple_repeat 1 270 0 1 1260 538 293 14 21 chr4 88604247 88604390 -67025730 + B1F SINE Alu 1 142 -7 1 1260 245 346 122 0 chr4 88604396 88604503 -67025617 + MIR SINE MIR 20 139 -123 1 1260 186 43 0 0 chr4 88604594 88604617 -67025503 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1261 441 0 0 0 chr4 88605046 88605095 -67025025 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1261 24 53 0 0 chr4 88605491 88605529 -67024591 + AT_rich Low_complexity Low_complexity 1 38 0 1 1261 187 304 29 0 chr4 88606990 88607059 -67023061 - MIR SINE MIR -105 157 87 1 1261 27 49 0 0 chr4 88607178 88607219 -67022901 + AT_rich Low_complexity Low_complexity 1 41 0 1 1261 651 103 0 18 chr4 88607600 88607709 -67022411 - Lx3C LINE L1 -2 6974 6868 1 1261 1427 272 93 40 chr4 88607710 88608364 -67021756 - Lx8 LINE L1 -42 7431 6743 1 1261 403 197 13 0 chr4 88608561 88608637 -67021483 - B1_Mur4 SINE Alu -9 141 65 1 1261 1042 321 86 14 chr4 88608651 88609153 -67020967 + Lx8 LINE L1 6205 6742 -731 1 1261 450 0 0 0 chr4 88609291 88609341 -67020779 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 1 1261 192 337 34 0 chr4 88609352 88609441 -67020679 - L2a LINE L2 -3 3423 3332 1 1261 358 316 75 12 chr4 88609539 88609699 -67020421 - MIRc SINE MIR -87 181 12 1 1261 605 282 182 20 chr4 88610010 88610268 -67019852 + B4A SINE B4 1 291 -1 1 1261 391 163 43 0 chr4 88610409 88610501 -67019619 + GA-rich Low_complexity Low_complexity 2 97 0 1 1261 1074 86 11 22 chr4 88610502 88610680 -67019440 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1261 1121 103 11 0 chr4 88610698 88610872 -67019248 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1261 733 153 0 26 chr4 88610883 88610960 -67019160 + polypurine Low_complexity Low_complexity 4 79 0 1 1261 1172 97 0 11 chr4 88610960 88611138 -67018982 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1261 733 153 0 26 chr4 88611138 88611214 -67018906 + polypurine Low_complexity Low_complexity 80 153 0 1 1261 330 378 29 61 chr4 88612423 88612647 -67017473 - LTR33A LTR ERVL -285 246 24 1 1261 1784 26 0 0 chr4 88613105 88613296 -67016824 - B2_Mm1a SINE B2 -1 192 2 1 1261 454 283 72 48 chr4 88613905 88614113 -67016007 + RMER1A Other Other 72 284 -746 1 1261 232 80 59 20 chr4 88614764 88614815 -67015305 + A-rich Low_complexity Low_complexity 1 53 0 1 1261 847 234 59 17 chr4 88614830 88615069 -67015051 - Lx7 LINE L1 -388 7308 7060 1 1261 1769 214 38 22 chr4 88615147 88615515 -67014605 + ORR1D1 LTR MaLR 1 374 0 1 1261 285 326 73 7 chr4 88615714 88615850 -67014270 - L1MB2 LINE L1 -14 6169 6025 1 1261 1239 281 175 24 chr4 88615877 88616831 -67013289 - L1MB2 LINE L1 -228 5943 4850 1 1261 1254 49 0 0 chr4 88617751 88617894 -67012226 + B1_Mm SINE Alu 2 144 -3 1 1261 712 283 16 92 chr4 88618117 88618324 -67011796 - B4A SINE B4 -61 231 38 1 1261 4533 41 0 2 chr4 88618324 88618833 -67011287 - L1Md_F2 LINE L1 0 6582 6075 1 1261 712 283 16 92 chr4 88618833 88618874 -67011246 - B4A SINE B4 -255 37 2 1 1261 382 338 42 21 chr4 88618962 88619104 -67011016 - MLT1J1 LTR MaLR -157 287 143 1 1261 1311 54 0 0 chr4 88619729 88619897 -67010223 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 1 1261 246 237 18 118 chr4 88620422 88620532 -67009588 - Lx8 LINE L1 -12 7461 7363 1 1261 6352 120 48 7 chr4 88621287 88622255 -67007865 - Lx3_Mus LINE L1 -16 6993 5987 1 1261 1010 38 8 22 chr4 88622256 88622390 -67007730 + Lx3A LINE L1 5830 5961 -1020 1 1261 378 244 24 35 chr4 88622399 88622483 -67007637 - PB1D10 SINE Alu -8 109 27 1 1261 951 282 78 34 chr4 88622483 88622803 -67007317 + MER2 DNA MER2_type 2 335 -10 1 1261 884 129 7 0 chr4 88623314 88623461 -67006659 + (GGGAA)n Simple_repeat Simple_repeat 3 150 0 1 1261 243 289 12 35 chr4 88623632 88623718 -67006402 + MLT1E3 LTR MaLR 518 601 -23 1 1261 1290 243 97 9 chr4 88623768 88624108 -67006012 - ORR1D2 LTR MaLR 0 370 1 1 1261 505 248 0 45 chr4 88624421 88624531 -67005589 + PB1D7 SINE Alu 5 109 -11 1 1261 1468 206 126 27 chr4 88624531 88624865 -67005255 - ORR1D1 LTR MaLR -7 367 1 1 1261 24 0 0 0 chr4 88624956 88624980 -67005140 + AT_rich Low_complexity Low_complexity 1 24 0 1 1261 3308 264 75 52 chr4 88625041 88625540 -67004580 + Lx9 LINE L1 6386 6880 -764 1 1261 369 0 0 0 chr4 88625540 88625581 -67004539 + (CTA)n Simple_repeat Simple_repeat 1 41 0 1 1261 3308 264 75 52 chr4 88625581 88626149 -67003971 + Lx9 LINE L1 6881 7478 -166 1 1261 237 33 0 0 chr4 88626149 88626179 -67003941 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1261 3308 264 75 52 chr4 88626179 88626250 -67003870 + Lx9 LINE L1 7479 7552 -92 1 1261 3175 118 13 11 chr4 88626274 88626752 -67003368 + RLTR20A2 LTR ERVK 1 479 -99 1 1261 432 0 0 0 chr4 88626752 88626800 -67003320 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1261 25 65 0 0 chr4 88626902 88626948 -67003172 + AT_rich Low_complexity Low_complexity 1 46 0 2 1261 614 13 13 0 chr4 88627320 88627395 -67002725 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1261 425 208 0 14 chr4 88627683 88627756 -67002364 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 2 1261 24 0 0 0 chr4 88627756 88627780 -67002340 + AT_rich Low_complexity Low_complexity 1 24 0 2 1261 317 257 39 131 chr4 88628103 88628233 -67001887 + RSINE1 SINE B4 2 119 -46 2 1261 396 0 0 0 chr4 88628235 88628279 -67001841 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1261 1975 179 73 13 chr4 88628745 88629129 -67000991 + Lx5 LINE L1 6633 7039 -11 2 1261 297 0 0 0 chr4 88629129 88629162 -67000958 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1261 2120 157 79 19 chr4 88629175 88629592 -67000528 - RMER10A LTR ERVL 0 442 1 2 1261 199 348 130 0 chr4 88631104 88631219 -66998901 + L2c LINE L2 3241 3370 -17 2 1261 4105 48 57 14 chr4 88631765 88632273 -66997847 - L1Md_F2 LINE L1 -1 6581 6052 2 1261 222 333 43 17 chr4 88632599 88632715 -66997405 - MIR SINE MIR -10 252 134 2 1261 1788 152 41 46 chr4 88633149 88633634 -66996486 + RMER17C LTR ERVK 16 439 -519 2 1261 788 129 92 7 chr4 88633659 88633800 -66996320 + RMER17C LTR ERVK 258 410 0 2 1261 529 277 171 19 chr4 88634719 88634977 -66995143 + RMER15 LTR ERVL 279 575 0 2 1261 554 170 170 43 chr4 88635745 88635886 -66994234 - RMER1C Other Other -69 1273 1115 2 1261 3061 195 73 26 chr4 88635887 88636443 -66993677 + Lx3C LINE L1 6226 6800 -176 2 1261 233 53 53 0 chr4 88636443 88636481 -66993639 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2 1261 3061 195 73 26 chr4 88636481 88636495 -66993625 + Lx3C LINE L1 6801 6813 -163 2 1261 3121 82 16 24 chr4 88636495 88636614 -66993506 - Lx3_Mus LINE L1 -14 6995 6878 2 1261 279 0 0 0 chr4 88636614 88636645 -66993475 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1261 1147 66 0 0 chr4 88636645 88636782 -66993338 - B1_Mm SINE Alu -9 138 2 2 1261 3121 82 16 24 chr4 88636782 88637084 -66993036 - Lx3_Mus LINE L1 -132 6877 6577 2 1261 3061 195 73 26 chr4 88637084 88637228 -66992892 + Lx3C LINE L1 6814 6974 -2 2 1261 451 121 96 0 chr4 88637242 88637325 -66992795 - RMER1C Other Other -214 1128 1038 2 1261 186 43 0 0 chr4 88638350 88638373 -66991747 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1261 491 270 9 9 chr4 88638571 88638683 -66991437 + RSINE1 SINE B4 3 114 -51 2 1261 456 19 0 0 chr4 88638767 88638820 -66991300 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1261 1200 105 0 0 chr4 88639220 88639482 -66990638 + (GAAA)n Simple_repeat Simple_repeat 1 262 0 2 1261 604 301 20 0 chr4 88639560 88639713 -66990407 + B4A SINE B4 100 255 -37 2 1261 198 0 0 0 chr4 88639734 88639756 -66990364 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1261 945 199 130 16 chr4 88639802 88639986 -66990134 - B3 SINE B2 -10 206 2 2 1261 512 282 24 0 chr4 88639998 88640122 -66989998 - B1F2 SINE Alu -10 139 13 2 1261 2048 210 29 10 chr4 88640966 88641375 -66988745 - MTD LTR MaLR 0 419 3 2 1261 2641 96 3 0 chr4 88642703 88643026 -66987094 - ORR1A2 LTR MaLR 0 327 4 2 1261 798 171 346 38 chr4 88643033 88643322 -66986798 + ORR1C2 LTR MaLR 1 378 0 2 1261 2123 156 6 21 chr4 88643430 88643764 -66986356 - ORR1A4 LTR MaLR 0 329 1 2 1261 193 328 31 0 chr4 88648080 88648144 -66981976 - MIR3 SINE MIR -11 197 132 2 1261 198 0 0 0 chr4 88648333 88648355 -66981765 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1261 885 294 16 3 chr4 88648537 88648769 -66981351 - B4 SINE B4 -46 246 15 2 1261 1390 287 39 28 chr4 88648775 88649312 -66980808 - L1MA4 LINE L1 -120 6180 5638 2 1261 2724 50 0 0 chr4 88649312 88649650 -66980470 + ORR1A1 LTR MaLR 1 338 -8 2 1261 721 137 53 12 chr4 88650258 88650414 -66979706 + MTA_Mm LTR MaLR 160 396 0 2 1261 9703 36 2 2 chr4 88650414 88651512 -66978608 + MTA_Mm-int LTR MaLR 1 1098 0 2 1261 3731 18 2 0 chr4 88651512 88651907 -66978213 + MTA_Mm LTR MaLR 1 396 0 2 1261 238 365 47 33 chr4 88652301 88652516 -66977604 + L2a LINE L2 3025 3242 -184 2 1261 1192 295 38 72 chr4 88652557 88653058 -66977062 - RMER5 LTR ERV1 -11 523 40 2 1261 21 0 0 0 chr4 88653643 88653664 -66976456 + AT_rich Low_complexity Low_complexity 1 21 0 2 1261 450 283 61 79 chr4 88653686 88653851 -66976269 + MTE2a LTR MaLR 73 234 -145 2 1261 451 231 22 11 chr4 88653950 88654042 -66976078 + MTE2a LTR MaLR 220 312 -67 2 1261 494 289 130 25 chr4 88654803 88655087 -66975033 - L1ME3B LINE L1 -102 6138 5825 2 1261 21 0 0 0 chr4 88655660 88655681 -66974439 + AT_rich Low_complexity Low_complexity 1 21 0 2 1261 26 0 0 0 chr4 88655881 88655907 -66974213 + AT_rich Low_complexity Low_complexity 1 26 0 2 1261 516 296 44 62 chr4 88656147 88656420 -66973700 + MER33 DNA MER1_type 1 268 -56 2 1261 2585 203 7 114 chr4 88656420 88656836 -66973284 - RMER19C LTR ERVK 0 611 234 2 1261 3538 38 2 2 chr4 88656836 88657232 -66972888 + MTA_Mm LTR MaLR 1 396 0 2 1261 2585 203 7 114 chr4 88657232 88657499 -66972621 - RMER19C LTR ERVK -378 233 1 2 1261 199 314 147 31 chr4 88657723 88657914 -66972206 - MIRb SINE MIR -53 215 3 2 1261 426 39 0 0 chr4 88659140 88659192 -66970928 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1261 297 0 0 0 chr4 88659192 88659224 -66970896 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1261 288 171 11 11 chr4 88659228 88659289 -66970831 + MLT2C1 LTR ERVL 507 567 0 2 1261 512 239 77 0 chr4 88659722 88659839 -66970281 + B3A SINE B2 1 126 -72 2 1261 2589 57 60 0 chr4 88660472 88660822 -66969298 + RLTR10A LTR ERVK 1 371 -40 2 1261 1151 35 7 0 chr4 88660822 88660963 -66969157 + L1Md_T LINE L1 6441 6582 0 2 1261 198 103 0 0 chr4 88660982 88661011 -66969109 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1261 314 160 0 0 chr4 88661013 88661063 -66969057 + RLTR10A LTR ERVK 362 411 0 2 1261 420 67 0 0 chr4 88661371 88661431 -66968689 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1261 241 347 52 21 chr4 88661701 88661798 -66968322 + MER63B DNA AcHobo 337 436 0 2 1261 328 313 68 17 chr4 88661868 88662087 -66968033 + L1M5 LINE L1 2624 2858 -3288 2 1261 395 246 168 12 chr4 88662161 88662334 -66967786 + Lx8 LINE L1 7272 7471 -2 2 1261 1189 180 86 72 chr4 88662705 88663053 -66967067 + Lx7 LINE L1 7215 7567 -129 2 1261 1318 73 0 38 chr4 88663059 88663243 -66966877 - L1_Mus2 LINE L1 -1 6565 6389 2 1261 1465 51 0 0 chr4 88663243 88663421 -66966699 + L1_Mus2 LINE L1 6205 6382 -184 2 1261 453 188 45 38 chr4 88663426 88663559 -66966561 + Lx7 LINE L1 7563 7696 0 2 1261 21 0 0 0 chr4 88663562 88663583 -66966537 + AT_rich Low_complexity Low_complexity 1 21 0 2 1261 284 366 18 9 chr4 88663720 88663833 -66966287 + PB1D10 SINE Alu 4 117 0 2 1261 29 28 0 0 chr4 88663957 88663993 -66966127 + AT_rich Low_complexity Low_complexity 1 36 0 2 1261 3589 130 74 24 chr4 88664469 88665051 -66965069 - Lx2B LINE L1 -3 6997 6387 2 1261 13912 134 18 12 chr4 88665051 88665623 -66964497 - L1_Mur1 LINE L1 -22 5864 5304 2 1261 1147 108 0 7 chr4 88665623 88665772 -66964348 - B1_Mus1 SINE Alu 0 148 1 2 1261 13912 134 18 12 chr4 88665772 88667436 -66962684 - L1_Mur1 LINE L1 -583 5303 3615 2 1261 634 305 53 21 chr4 88667804 88668085 -66962035 - B4A SINE B4 0 292 3 2 1261 285 254 14 14 chr4 88668103 88668175 -66961945 - MLT2B2 LTR ERVL -426 89 18 2 1261 251 140 0 0 chr4 88668383 88668433 -66961687 - L1Md_F2 LINE L1 -12 6570 6521 2 1261 1132 76 7 0 chr4 88669449 88669593 -66960527 + B1_Mus2 SINE Alu 2 146 -1 2 1261 342 372 34 34 chr4 88670250 88670428 -66959692 + MER5B DNA MER1_type 1 178 0 2 1261 253 379 0 11 chr4 88670931 88671019 -66959101 + MER5A DNA MER1_type 75 161 -28 2 1261 7926 98 10 19 chr4 88671674 88672855 -66957265 + Lx2 LINE L1 5814 6983 -14 2 1261 23 68 0 0 chr4 88672855 88672899 -66957221 + AT_rich Low_complexity Low_complexity 1 44 0 2 1261 7407 68 0 0 chr4 88673584 88674716 -66955404 + L1_Mus1 LINE L1 5435 6566 -1 2 1261 900 223 93 18 chr4 88674915 88675261 -66954859 - MTD LTR MaLR -16 403 1 2 1261 356 333 147 65 chr4 88675301 88675718 -66954402 + MLT2B3 LTR ERVL 2 459 -95 2 1261 980 188 93 10 chr4 88675718 88675922 -66954198 - URR1B DNA MER1_type -3 222 2 2 1261 356 333 147 65 chr4 88675922 88676015 -66954105 + MLT2B3 LTR ERVL 460 554 0 2 1261 250 338 94 14 chr4 88676676 88676844 -66953276 - MIRb SINE MIR -24 244 58 2 1261 181 216 115 19 chr4 88677125 88677177 -66952943 - L3 LINE CR1 -996 3493 3437 2 1261 707 173 7 0 chr4 88678111 88678250 -66951870 + GA-rich Low_complexity Low_complexity 2 141 0 2 1261 401 291 53 30 chr4 88678333 88678464 -66951656 - B3 SINE B2 -82 134 1 2 1261 264 30 0 0 chr4 88678523 88678556 -66951564 + (CG)n Simple_repeat Simple_repeat 1 33 0 2 1261 321 47 0 0 chr4 88678556 88678598 -66951522 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1261 1170 68 0 7 chr4 88678656 88678804 -66951316 + B1_Mm SINE Alu 1 147 0 2 1261 205 205 11 103 chr4 88679211 88679298 -66950822 + MER5B DNA MER1_type 17 95 -83 2 1261 272 278 117 27 chr4 88679909 88680020 -66950100 + MTD LTR MaLR 2 122 -237 2 1261 248 333 17 0 chr4 88680584 88680704 -66949416 - L1MA5 LINE L1 -5 6295 6174 2 1261 735 245 33 0 chr4 88680879 88681030 -66949090 + MTD LTR MaLR 133 288 -131 2 1261 233 274 133 31 chr4 88681115 88681213 -66948907 - ORR1E LTR MaLR -250 109 2 2 1261 1861 273 158 5 chr4 88681469 88682216 -66947904 - Lx8 LINE L1 -5 7468 6608 2 1261 2190 38 0 0 chr4 88683025 88683290 -66946830 - L1Md_F2 LINE L1 -217 6365 6101 2 1261 1870 39 0 13 chr4 88683290 88683522 -66946598 + L1Md_F2 LINE L1 6342 6570 -12 2 1261 210 37 0 0 chr4 88684007 88684034 -66946086 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1261 547 350 83 12 chr4 88684724 88685155 -66944965 - L1MB2 LINE L1 -30 6141 5680 2 1261 195 340 168 12 chr4 88685731 88685892 -66944228 - MIRb SINE MIR -22 246 61 2 1261 232 387 67 0 chr4 88687145 88687264 -66942856 - MER5B DNA MER1_type -1 177 51 2 1261 417 234 13 6 chr4 88687297 88687456 -66942664 + (TA)n Simple_repeat Simple_repeat 1 160 0 2 1261 180 0 0 0 chr4 88687472 88687492 -66942628 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1261 523 278 0 0 chr4 88687584 88687692 -66942428 + PB1D10 SINE Alu 4 111 -6 3 1261 290 132 0 19 chr4 88687822 88687876 -66942244 + CT-rich Low_complexity Low_complexity 6 58 0 3 1261 578 184 4 1 chr4 88687883 88687994 -66942126 - B1_Mus1 SINE Alu -7 113 1 3 1261 314 259 144 69 chr4 88687994 88688057 -66942063 - B4 SINE B4 -73 219 33 3 1261 632 191 7 0 chr4 88688058 88688194 -66941926 - L1MA7 LINE L1 -382 5909 5773 3 1261 2696 260 84 43 chr4 88688217 88689213 -66940907 - Lx8 LINE L1 -23 7450 6414 3 1261 875 232 0 37 chr4 88689214 88689456 -66940664 - L1MA7 LINE L1 -512 5779 5547 3 1261 225 0 0 0 chr4 88689493 88689518 -66940602 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1261 5384 170 43 54 chr4 88690546 88691881 -66938239 + Lx6 LINE L1 4637 5961 -1499 3 1261 2753 206 73 10 chr4 88691905 88692174 -66937946 + Lx6 LINE L1 6468 6737 -723 3 1261 258 32 0 0 chr4 88692174 88692205 -66937915 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 1261 2753 206 73 10 chr4 88692205 88692538 -66937582 + Lx6 LINE L1 6738 7106 -354 3 1261 187 152 21 21 chr4 88693037 88693084 -66937036 + GA-rich Low_complexity Low_complexity 4 50 0 3 1261 1984 100 122 3 chr4 88694392 88694703 -66935417 + Lx3A LINE L1 6625 6972 -9 3 1261 371 90 51 0 chr4 88694726 88694804 -66935316 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1261 378 0 0 0 chr4 88696485 88696527 -66933593 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1261 486 0 0 0 chr4 88696527 88696580 -66933540 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1261 537 304 24 0 chr4 88696587 88696712 -66933408 - RSINE1 SINE B4 -34 131 4 3 1261 510 169 12 0 chr4 88697319 88697402 -66932718 - Lx6 LINE L1 -452 7008 6925 3 1261 415 258 98 117 chr4 88698490 88698777 -66931343 - Charlie2b DNA MER1_type -173 2609 2332 3 1261 1901 70 0 69 chr4 88698777 88699052 -66931068 + L1_Mus2 LINE L1 6311 6566 0 3 1261 415 258 98 117 chr4 88699052 88699335 -66930785 - Charlie2b DNA MER1_type -451 2331 2050 3 1261 1014 296 45 14 chr4 88699341 88699694 -66930426 - Lx6 LINE L1 -4 7456 7093 3 1261 1242 212 38 0 chr4 88699678 88699966 -66930154 - Lx7 LINE L1 -606 7090 6792 3 1261 526 259 104 18 chr4 88699978 88700198 -66929922 - Charlie2b DNA MER1_type -726 2056 1818 3 1261 245 317 83 45 chr4 88700353 88700485 -66929635 - Charlie2b DNA MER1_type -2645 137 1 3 1261 212 178 22 0 chr4 88700618 88700663 -66929457 - B4 SINE B4 -245 47 2 3 1261 27 29 0 0 chr4 88700666 88700700 -66929420 + AT_rich Low_complexity Low_complexity 1 34 0 3 1261 576 233 50 0 chr4 88700859 88700979 -66929141 - B1F SINE Alu -21 128 3 3 1261 29 60 0 0 chr4 88700989 88701039 -66929081 + AT_rich Low_complexity Low_complexity 1 50 0 3 1261 993 73 6 47 chr4 88701054 88701226 -66928894 - L1_Mus4 LINE L1 0 6636 6472 3 1261 1517 35 30 0 chr4 88701244 88701444 -66928676 - L1Md_F3 LINE L1 -2 6582 6377 3 1261 264 30 0 0 chr4 88702536 88702569 -66927551 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1261 183 80 0 0 chr4 88703088 88703113 -66927007 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1261 555 214 18 9 chr4 88705007 88705120 -66925000 + ID_B1 SINE B4 107 220 -4 3 1261 23 0 0 0 chr4 88705284 88705307 -66924813 + AT_rich Low_complexity Low_complexity 1 23 0 3 1261 32 26 0 0 chr4 88705549 88705588 -66924532 + AT_rich Low_complexity Low_complexity 1 39 0 3 1261 321 328 94 36 chr4 88705588 88705886 -66924234 - MTEb LTR MaLR -8 371 31 3 1261 188 303 162 55 chr4 88706080 88706426 -66923694 - L2a LINE L2 -109 3317 2935 3 1261 2958 98 0 0 chr4 88706774 88707224 -66922896 + L1_Mm LINE L1 1904 2353 -3530 3 1261 253 363 85 35 chr4 88708435 88708635 -66921485 - LTR16A LTR ERVL -21 430 221 3 1261 350 311 11 0 chr4 88708934 88709024 -66921096 - MER45B DNA Tip100 0 1040 950 3 1261 423 38 0 0 chr4 88709141 88709194 -66920926 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1261 1289 21 0 0 chr4 88709353 88709498 -66920622 + B1_Mm SINE Alu 2 146 -1 3 1261 334 378 72 0 chr4 88709585 88709757 -66920363 - MER45B DNA Tip100 -418 622 437 3 1261 699 71 0 0 chr4 88709757 88709855 -66920265 + (TG)n Simple_repeat Simple_repeat 2 99 0 3 1261 334 378 72 0 chr4 88709855 88709875 -66920245 - MER45B DNA Tip100 -604 436 417 3 1261 774 247 53 5 chr4 88709873 88710060 -66920060 + MTE2b LTR MaLR 184 379 0 3 1261 2033 281 35 25 chr4 88710056 88710624 -66919496 + MTE2b-int LTR MaLR 1 574 -1006 3 1261 1138 275 71 3 chr4 88710632 88710971 -66919149 + MTE2b-int LTR MaLR 1217 1578 -2 3 1261 1003 252 125 13 chr4 88710973 88711278 -66918842 + MTE2b LTR MaLR 1 339 -40 3 1261 181 109 21 21 chr4 88711460 88711507 -66918613 + A-rich Low_complexity Low_complexity 3 49 0 3 1261 22 35 0 0 chr4 88712283 88712312 -66917808 + AT_rich Low_complexity Low_complexity 1 29 0 3 1261 264 290 0 16 chr4 88712563 88712626 -66917494 + B3A SINE B2 122 183 -15 3 1261 346 298 129 0 chr4 88712632 88712756 -66917364 + HAL1-3A_ME LINE L1 1976 2115 -743 3 1261 305 327 55 41 chr4 88713198 88713509 -66916611 - MLT1A0 LTR MaLR -70 338 56 3 1261 192 254 0 35 chr4 88713619 88713676 -66916444 - L2 LINE L2 -1165 2254 2200 3 1261 5401 130 23 21 chr4 88713863 88714776 -66915344 - L1_Mur3 LINE L1 -2896 2984 2059 3 1261 495 60 0 0 chr4 88714776 88714843 -66915277 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1261 5401 130 23 21 chr4 88714843 88714911 -66915209 - L1_Mur3 LINE L1 -3822 2058 2002 3 1261 996 198 25 33 chr4 88714910 88715151 -66914969 - L1_Mur3 LINE L1 -7055 673 435 3 1261 426 218 17 52 chr4 88715242 88715254 -66914866 - PB1D9 SINE Alu 0 120 111 3 1261 318 26 0 0 chr4 88715254 88715293 -66914827 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1261 426 218 17 52 chr4 88715293 88715396 -66914724 - PB1D9 SINE Alu -10 110 10 3 1261 183 162 0 0 chr4 88715701 88715738 -66914382 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1261 623 281 0 35 chr4 88715796 88715940 -66914180 - B1_Mur1 SINE Alu -10 139 1 3 1261 911 100 0 14 chr4 88716276 88716418 -66913702 + (TTTC)n Simple_repeat Simple_repeat 3 142 0 3 1261 677 266 19 31 chr4 88717241 88717400 -66912720 + RSINE1 SINE B4 2 158 -7 3 1261 284 0 0 27 chr4 88717400 88717437 -66912683 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1261 432 0 0 0 chr4 88719971 88720019 -66910101 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 1261 24 32 0 0 chr4 88720160 88720191 -66909929 + AT_rich Low_complexity Low_complexity 1 31 0 3 1261 956 240 162 25 chr4 88720794 88721157 -66908963 - MLT2D LTR ERVL -1 413 1 3 1261 180 203 136 0 chr4 88721376 88721435 -66908685 + L3 LINE CR1 800 866 -3623 3 1261 367 304 88 0 chr4 88721675 88721777 -66908343 + ID_B1 SINE B4 76 186 -38 3 1261 410 237 8 0 chr4 88722166 88722284 -66907836 + CT-rich Low_complexity Low_complexity 6 124 0 3 1261 225 273 33 22 chr4 88723520 88723610 -66906510 - ORR1E LTR MaLR -1 369 279 3 1261 268 363 34 51 chr4 88723701 88723878 -66906242 - ORR1E LTR MaLR -166 193 20 3 1261 221 352 34 0 chr4 88724469 88724557 -66905563 + MIR SINE MIR 70 160 -102 3 1261 203 179 26 0 chr4 88724580 88724619 -66905501 + L3 LINE CR1 4445 4484 -5 3 1261 464 236 94 0 chr4 88725107 88725213 -66904907 + B1F SINE Alu 3 118 -31 3 1261 184 54 81 0 chr4 88725340 88725377 -66904743 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1261 205 253 75 12 chr4 88725611 88725691 -66904429 + MIRb SINE MIR 125 209 -59 3 1261 415 247 0 0 chr4 88725922 88726003 -66904117 - ID4 SINE ID -1 82 2 3 1261 276 313 12 0 chr4 88726430 88726513 -66903607 + MTEb LTR MaLR 242 325 -54 3 1261 329 200 0 0 chr4 88726552 88726617 -66903503 + MTEb LTR MaLR 315 379 0 3 1261 892 179 243 0 chr4 88726666 88726839 -66903281 + B3 SINE B2 2 216 0 3 1261 21 0 0 0 chr4 88726839 88726860 -66903260 + AT_rich Low_complexity Low_complexity 1 21 0 3 1261 1413 54 0 0 chr4 88727434 88727601 -66902519 - L1Md_T LINE L1 0 6582 6416 3 1261 1038 118 177 0 chr4 88727624 88727810 -66902310 + URR1B DNA MER1_type 7 225 0 3 1261 620 308 56 43 chr4 88727811 88728113 -66902007 + MER63C DNA AcHobo 345 650 -280 3 1261 28 29 0 0 chr4 88728389 88728424 -66901696 + AT_rich Low_complexity Low_complexity 1 35 0 3 1261 183 80 0 0 chr4 88729144 88729169 -66900951 + (GAA)n Simple_repeat Simple_repeat 2 26 0 3 1261 2292 131 40 30 chr4 88730796 88731166 -66898954 - Lx2 LINE L1 -1 6996 6623 3 1261 1134 281 91 42 chr4 88731172 88731344 -66898776 + Lx8 LINE L1 6789 6953 -520 3 1261 327 49 0 0 chr4 88731344 88731385 -66898735 + (TCC)n Simple_repeat Simple_repeat 1 41 0 3 1261 1134 281 91 42 chr4 88731385 88731662 -66898458 + Lx8 LINE L1 6954 7260 -213 3 1261 1768 153 10 7 chr4 88731939 88732228 -66897892 - ORR1B1 LTR MaLR 0 394 105 3 1261 1475 162 54 8 chr4 88732404 88732764 -66897356 + RMER1B Other Other 658 1057 -9 3 1261 1057 289 69 22 chr4 88732996 88733400 -66896720 + L1MEg LINE L1 1095 1517 -4567 3 1261 285 75 0 0 chr4 88733433 88733473 -66896647 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1261 426 39 0 0 chr4 88733474 88733526 -66896594 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1261 793 211 14 14 chr4 88735394 88735538 -66894582 - B1F2 SINE Alu -5 144 1 3 1262 818 206 212 0 chr4 88736899 88737083 -66893037 + URR1B DNA MER1_type 1 223 -2 3 1262 242 363 140 56 chr4 88737532 88737981 -66892139 - L2 LINE L2 -409 3010 2524 3 1262 291 54 0 0 chr4 88739019 88739056 -66891064 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1262 231 271 55 41 chr4 88739079 88739152 -66890968 - B4 SINE B4 -38 254 181 3 1262 289 240 160 0 chr4 88739114 88739189 -66890931 - PB1D10 SINE Alu -8 109 23 3 1262 24 32 0 0 chr4 88739258 88739289 -66890831 + AT_rich Low_complexity Low_complexity 1 31 0 3 1262 462 276 10 75 chr4 88739716 88739915 -66890205 + MLT1C LTR MaLR 151 388 -79 3 1262 231 36 0 0 chr4 88739915 88739943 -66890177 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1262 258 288 0 0 chr4 88739956 88740015 -66890105 + MLT1C LTR MaLR 409 467 0 3 1262 412 314 77 15 chr4 88740052 88740311 -66889809 - L1MB8 LINE L1 -92 6086 5812 3 1262 202 329 27 41 chr4 88741205 88741278 -66888842 - MIRm SINE MIR -25 251 180 3 1262 629 178 31 0 chr4 88742004 88742128 -66887992 + RMER1C Other Other 1205 1332 -10 3 1262 1059 117 62 0 chr4 88742128 88742307 -66887813 + Lx2 LINE L1 6808 6997 0 3 1262 590 143 0 9 chr4 88742326 88742432 -66887688 + GA-rich Low_complexity Low_complexity 3 107 0 3 1262 307 284 72 108 chr4 88742438 88742604 -66887516 + RSINE1 SINE B4 2 161 -4 3 1262 210 208 0 0 chr4 88742643 88742691 -66887429 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1262 204 335 84 48 chr4 88743294 88743460 -66886660 - MIR SINE MIR -61 201 30 3 1262 648 245 122 52 chr4 88744440 88744711 -66885409 - MER67D LTR ERV1 -203 311 22 4 1262 1569 73 5 0 chr4 88744961 88745152 -66884968 - B2_Mm1t SINE B2 -1 192 1 4 1262 432 0 0 0 chr4 88745243 88745291 -66884829 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1262 638 11 0 42 chr4 88747699 88747794 -66882326 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1262 587 268 80 0 chr4 88748250 88748388 -66881732 - B1F SINE Alu 0 149 1 4 1262 233 206 101 14 chr4 88748451 88748520 -66881600 + L2c LINE L2 3304 3378 -9 4 1262 423 170 0 0 chr4 88748755 88748855 -66881265 + CT-rich Low_complexity Low_complexity 2 101 0 4 1262 784 311 82 31 chr4 88749190 88749509 -66880611 + MLT1A LTR MaLR 34 368 -6 4 1262 1484 231 48 20 chr4 88749935 88750293 -66879827 - ORR1D2 LTR MaLR 0 370 3 4 1262 1423 228 41 70 chr4 88750639 88751026 -66879094 - MTEb LTR MaLR -3 376 1 4 1262 840 9 28 0 chr4 88751894 88752003 -66878117 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 4 1262 484 302 18 59 chr4 88752195 88752364 -66877756 + RSINE1 SINE B4 2 163 -2 4 1262 1284 267 89 37 chr4 88752366 88752422 -66877698 - MTD LTR MaLR -14 405 354 4 1262 225 0 0 0 chr4 88752422 88752447 -66877673 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1262 351 0 0 0 chr4 88752457 88752496 -66877624 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1262 1284 267 89 37 chr4 88752496 88752809 -66877311 - MTD LTR MaLR -73 346 5 4 1262 21 57 0 0 chr4 88752856 88752891 -66877229 + AT_rich Low_complexity Low_complexity 1 35 0 4 1262 2016 166 243 47 chr4 88752914 88753358 -66876762 + MT2A LTR ERVL 3 533 0 4 1262 297 263 19 48 chr4 88753736 88753840 -66876280 + MLT1A1 LTR MaLR 307 407 -1 4 1262 363 94 435 0 chr4 88754024 88754109 -66876011 + URR1B DNA MER1_type 1 122 -103 4 1262 11400 35 1 0 chr4 88754109 88755525 -66874595 - L1Md_F2 LINE L1 -624 5958 4542 4 1262 5219 49 3 7 chr4 88755526 88756138 -66873982 + L1Md_F2 LINE L1 5972 6581 -1 4 1262 663 130 9 0 chr4 88756138 88756246 -66873874 + URR1B DNA MER1_type 110 218 -7 4 1262 256 290 14 14 chr4 88756853 88756923 -66873197 + B4A SINE B4 214 283 -9 4 1262 198 97 0 0 chr4 88757123 88757134 -66872986 + (GA)n Simple_repeat Simple_repeat 2 12 0 4 1262 240 137 0 0 chr4 88757134 88757185 -66872935 + (ACTG)n Simple_repeat Simple_repeat 3 53 0 4 1262 198 97 0 0 chr4 88757185 88757204 -66872916 + (GA)n Simple_repeat Simple_repeat 1 19 0 4 1262 391 276 166 37 chr4 88757330 88757594 -66872526 + MLT1D LTR MaLR 124 392 -113 4 1262 411 351 13 25 chr4 88757840 88757998 -66872122 - RSINE1 SINE B4 -5 160 5 4 1262 192 77 0 0 chr4 88759078 88759104 -66871016 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1262 606 28 0 0 chr4 88759153 88759225 -66870895 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1262 295 363 94 10 chr4 88759905 88760108 -66870012 + MIRb SINE MIR 31 250 -18 4 1262 242 163 32 85 chr4 88760440 88760451 -66869669 + RMER17C LTR ERVK 172 184 -226 4 1262 494 324 13 7 chr4 88760451 88760600 -66869520 + RSINE1 SINE B4 3 152 -13 4 1262 242 163 32 85 chr4 88760600 88760682 -66869438 + RMER17C LTR ERVK 185 260 -150 4 1262 5344 57 5 8 chr4 88760718 88761352 -66868768 - L1Md_F2 LINE L1 -1 6581 5950 4 1262 1252 176 28 0 chr4 88761844 88762060 -66868060 - URR1B DNA MER1_type 0 225 4 4 1262 2737 152 32 2 chr4 88762211 88762620 -66867500 - MTC LTR MaLR 0 421 1 4 1262 886 112 108 36 chr4 88763088 88763227 -66866893 - B1_Mur4 SINE Alu -1 149 1 4 1262 958 17 161 0 chr4 88763873 88763991 -66866129 + B1_Mm SINE Alu 1 137 -10 4 1262 333 0 0 0 chr4 88763991 88764028 -66866092 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1262 424 296 89 21 chr4 88764224 88764414 -66865706 - RMER15 LTR ERVL -18 557 355 4 1262 401 269 18 26 chr4 88764713 88764839 -66865281 + B4A SINE B4 17 132 -92 4 1262 224 388 40 20 chr4 88764876 88765026 -66865094 - L2a LINE L2 -314 3112 2960 4 1262 1788 205 40 12 chr4 88765049 88765395 -66864725 - ORR1D1 LTR MaLR -18 356 1 4 1262 320 379 51 38 chr4 88765405 88765604 -66864516 - L2a LINE L2 -526 2893 2688 4 1262 510 277 7 28 chr4 88765604 88765745 -66864375 + B1_Mur1 SINE Alu 2 139 -10 4 1262 320 379 51 38 chr4 88765745 88765838 -66864282 - L2a LINE L2 -732 2687 2597 4 1262 297 319 2 0 chr4 88765868 88765953 -66864167 + ID4_ SINE ID 3 88 -64 4 1262 223 327 105 54 chr4 88766199 88766438 -66863682 - L2a LINE L2 -1104 2315 2065 4 1262 3031 123 18 2 chr4 88767380 88767821 -66862299 - Lx2B LINE L1 -4 6996 6549 4 1262 1728 118 1 4 chr4 88767821 88768076 -66862044 + Lx2 LINE L1 6306 6555 -426 4 1262 428 325 103 20 chr4 88768274 88768478 -66861642 - MIR SINE MIR -6 256 36 4 1262 393 353 6 50 chr4 88768639 88768785 -66861335 + B3A SINE B2 9 148 -50 4 1262 483 18 0 0 chr4 88768785 88768841 -66861279 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1262 393 355 20 48 chr4 88768841 88768865 -66861255 + B3A SINE B2 149 177 -39 4 1262 1367 79 45 0 chr4 88768865 88769043 -66861077 - B2_Mm2 SINE B2 -9 186 1 4 1262 331 358 40 45 chr4 88769043 88769070 -66861050 + B3 SINE B2 178 205 -11 4 1262 1067 294 163 30 chr4 88770312 88770881 -66859239 - Lx8 LINE L1 -3 7470 6826 4 1262 312 330 113 0 chr4 88770885 88770982 -66859138 - PB1D10 SINE Alu -1 116 9 4 1262 1203 88 0 0 chr4 88771429 88771577 -66858543 - B1_Mus1 SINE Alu 0 148 1 4 1262 3966 82 21 7 chr4 88771896 88772471 -66857649 + MusHAL1 LINE L1 1021 1603 -1109 4 1262 189 107 0 0 chr4 88773016 88773044 -66857076 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1262 805 313 25 21 chr4 88773087 88773371 -66856749 - B4A SINE B4 -6 286 2 4 1262 216 135 0 0 chr4 88773821 88773858 -66856262 + (TCC)n Simple_repeat Simple_repeat 3 39 0 4 1262 588 223 123 0 chr4 88773858 88773988 -66856132 - B1_Mus2 SINE Alu 0 147 2 4 1262 189 179 0 49 chr4 88775323 88775364 -66854756 + L4 LINE RTE 1241 1279 -750 4 1262 668 274 92 4 chr4 88775623 88775861 -66854259 - L1MA6 LINE L1 0 6300 6042 4 1262 200 34 0 33 chr4 88775876 88775906 -66854214 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1262 200 348 14 0 chr4 88776122 88776191 -66853929 + GA-rich Low_complexity Low_complexity 1 70 0 4 1262 26 30 0 0 chr4 88776543 88776576 -66853544 + AT_rich Low_complexity Low_complexity 1 33 0 4 1262 325 226 132 47 chr4 88776586 88776743 -66853377 + L1M2 LINE L1 4358 4518 -1625 4 1262 387 0 0 0 chr4 88776743 88776786 -66853334 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1262 325 211 164 9 chr4 88776786 88776809 -66853311 + L1M2 LINE L1 4519 4541 -1602 4 1262 2406 166 117 27 chr4 88776815 88777304 -66852816 - RMER16 LTR ERVK 0 533 1 4 1262 5048 119 86 32 chr4 88777314 88777666 -66852454 + Lx5 LINE L1 4227 4593 -1284 4 1262 818 47 0 9 chr4 88777666 88777774 -66852346 + (GAA)n Simple_repeat Simple_repeat 2 108 0 4 1262 7009 128 70 33 chr4 88777774 88777794 -66852326 + Lx5 LINE L1 4594 4616 -1261 4 1262 2005 129 9 63 chr4 88777794 88778142 -66851978 + ORR1A4 LTR MaLR 1 329 0 4 1262 7009 128 70 33 chr4 88778142 88778720 -66851400 + Lx5 LINE L1 4617 5225 -652 4 1262 279 0 0 0 chr4 88778720 88778751 -66851369 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1262 7009 128 70 33 chr4 88778751 88779075 -66851045 + Lx5 LINE L1 5226 5550 -327 4 1262 5393 147 64 18 chr4 88779076 88779227 -66850893 + Lx5 LINE L1 5727 5873 -1177 4 1262 1136 59 0 0 chr4 88779227 88779362 -66850758 + B1_Mus2 SINE Alu 2 136 -11 4 1262 180 77 0 0 chr4 88779362 88779388 -66850732 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1262 5393 147 64 18 chr4 88779388 88780173 -66849947 + Lx5 LINE L1 5874 6706 -344 4 1262 630 192 32 0 chr4 88780168 88780293 -66849827 + Lx4B LINE L1 6890 7018 -40 4 1262 374 326 106 0 chr4 88780480 88780555 -66849565 - RSINE1 SINE B4 -1 164 86 4 1262 2116 144 11 6 chr4 88780555 88780912 -66849208 - RLTR15 LTR ERVK 0 359 1 4 1262 374 326 106 0 chr4 88780912 88780977 -66849143 - RSINE1 SINE B4 -80 85 10 4 1262 470 282 0 0 chr4 88781028 88781145 -66848975 - PB1D10 SINE Alu 0 117 1 4 1262 658 285 111 39 chr4 88781323 88781764 -66848356 - RMER5 LTR ERV1 -4 530 58 4 1262 1283 105 28 0 chr4 88781933 88782114 -66848006 + B2_Mm2 SINE B2 2 187 -8 4 1262 541 184 118 4 chr4 88782130 88782245 -66847875 + B3A SINE B2 2 126 -67 4 1262 297 68 0 0 chr4 88782245 88782289 -66847831 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1262 265 287 143 46 chr4 88782289 88782348 -66847772 + B2_Mm1a SINE B2 127 192 -1 4 1262 253 279 0 14 chr4 88782590 88782659 -66847461 - ID4_ SINE ID -14 69 2 4 1262 403 290 0 44 chr4 88782663 88782800 -66847320 - ID_B1 SINE B4 -3 221 91 4 1262 379 271 86 0 chr4 88784603 88784754 -66845366 - ERVL-int LTR ERVL -2850 2907 2744 4 1262 397 320 31 38 chr4 88785104 88785263 -66844857 + B4A SINE B4 10 167 -125 4 1262 405 0 0 0 chr4 88785277 88785322 -66844798 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1262 197 324 99 0 chr4 88786007 88786078 -66844042 - L2c LINE L2 -11 3376 3299 4 1262 363 289 135 53 chr4 88786178 88786386 -66843734 + MLT1A0 LTR MaLR 72 296 -69 4 1262 213 175 0 0 chr4 88786713 88786753 -66843367 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 1262 322 276 47 0 chr4 88786761 88786888 -66843232 - L2c LINE L2 -532 2887 2755 4 1262 248 270 0 105 chr4 88789044 88789168 -66840952 - MLT1B LTR MaLR -71 319 209 4 1262 455 235 287 21 chr4 88789213 88789547 -66840573 - RMER5 LTR ERV1 -79 455 33 4 1262 2133 108 3 50 chr4 88789742 88789791 -66840329 - ORR1A2 LTR MaLR -3 324 287 4 1262 1497 58 10 16 chr4 88789791 88789985 -66840135 - B2_Mm2 SINE B2 -2 193 1 4 1262 2133 108 3 50 chr4 88789985 88790275 -66839845 - ORR1A2 LTR MaLR -41 286 1 4 1262 891 132 282 0 chr4 88790957 88791131 -66838989 + URR1A DNA MER1_type 4 226 0 4 1262 340 250 0 0 chr4 88792053 88792125 -66837995 - ID_B1 SINE B4 -26 198 127 4 1262 696 192 219 6 chr4 88792825 88793003 -66837117 - B3 SINE B2 0 216 1 4 1262 566 87 5 36 chr4 88793121 88793233 -66836887 + B1_Mm SINE Alu 40 149 0 4 1262 261 0 0 0 chr4 88793329 88793358 -66836762 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1262 1367 108 0 20 chr4 88793686 88793885 -66836235 + B2_Mm2 SINE B2 1 195 0 4 1262 6404 174 48 28 chr4 88794248 88796107 -66834013 - Lx5 LINE L1 -5 7045 5139 4 1262 2908 148 107 11 chr4 88796103 88796747 -66833373 - Lx5 LINE L1 -2555 3322 2617 4 1262 1371 66 50 0 chr4 88796824 88797005 -66833115 - B2_Mm2 SINE B2 -4 191 2 4 1262 294 98 0 0 chr4 88797987 88798038 -66832082 + (T)n Simple_repeat Simple_repeat 1 51 0 5 1262 25 0 0 0 chr4 88799002 88799027 -66831093 + AT_rich Low_complexity Low_complexity 1 25 0 5 1262 301 140 0 50 chr4 88799039 88799099 -66831021 - B2_Mm2 SINE B2 -92 103 47 5 1262 974 111 28 0 chr4 88799142 88799286 -66830834 - B2_Mm1t SINE B2 -45 148 1 5 1262 22 0 0 0 chr4 88799390 88799412 -66830708 + GC_rich Low_complexity Low_complexity 1 22 0 5 1262 699 178 230 22 chr4 88799892 88800070 -66830050 - B3 SINE B2 -1 215 1 5 1262 678 239 14 0 chr4 88800581 88800723 -66829397 - B1_Mur4 SINE Alu 0 150 7 5 1262 1013 71 50 0 chr4 88800941 88801081 -66829039 - B1_Mus1 SINE Alu 0 148 2 5 1262 479 96 12 0 chr4 88801159 88801242 -66828878 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1262 21 36 0 0 chr4 88801307 88801335 -66828785 + AT_rich Low_complexity Low_complexity 1 28 0 5 1262 1098 122 0 6 chr4 88801640 88801813 -66828307 + B2_Mm2 SINE B2 5 176 -19 5 1262 180 0 0 0 chr4 88801874 88801894 -66828226 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1262 489 139 297 0 chr4 88801962 88802063 -66828057 + B1_Mus1 SINE Alu 5 135 -13 5 1262 552 30 0 0 chr4 88802067 88802133 -66827987 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 5 1262 552 306 162 18 chr4 88802782 88803387 -66826733 - L1MA9 LINE L1 -228 6084 5343 5 1262 374 179 0 25 chr4 88803373 88803453 -66826667 - L1_Rod LINE L1 -637 5210 5133 5 1262 238 200 67 0 chr4 88803849 88803909 -66826211 - L1M3 LINE L1 -3069 3071 3008 5 1262 241 238 94 50 chr4 88804027 88804186 -66825934 - L1MA6 LINE L1 -312 5979 5814 5 1262 1198 41 0 13 chr4 88804203 88804352 -66825768 - B1_Mm SINE Alu 0 147 1 5 1262 805 138 27 14 chr4 88804493 88804640 -66825480 + B1_Mur4 SINE Alu 2 150 0 5 1262 398 240 40 0 chr4 88804734 88804834 -66825286 + PB1D9 SINE Alu 12 115 -5 5 1262 3400 46 24 1 chr4 88805441 88805950 -66824170 + MERVL-int LTR ERVL 4965 5626 -135 5 1262 229 75 32 145 chr4 88805956 88806018 -66824102 + ORR1A3-int LTR MaLR 586 640 -1323 5 1262 296 53 0 0 chr4 88806018 88806056 -66824064 + MERVL-int LTR ERVL 5448 5485 0 5 1262 1604 75 13 0 chr4 88806056 88806284 -66823836 + MT2C_Mm LTR ERVL 1 231 -244 5 1262 341 281 35 82 chr4 88807041 88807381 -66822739 - RMER13A LTR ERVK -77 550 183 5 1262 279 0 0 0 chr4 88807547 88807578 -66822542 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1262 1609 189 57 38 chr4 88808840 88809209 -66820911 - MTB_Mm LTR MaLR -31 376 1 5 1262 793 90 36 0 chr4 88810971 88811082 -66819038 - PB1D9 SINE Alu -5 115 1 5 1262 660 244 119 0 chr4 88811742 88811918 -66818202 - B3 SINE B2 0 216 20 5 1262 225 94 0 0 chr4 88812047 88812079 -66818041 + (TTCG)n Simple_repeat Simple_repeat 2 33 0 5 1262 1250 101 6 27 chr4 88812409 88812592 -66817528 + B2_Mm1t SINE B2 1 179 -14 5 1262 354 136 330 68 chr4 88812605 88812723 -66817397 + B2_Mm2 SINE B2 47 195 0 5 1262 968 245 104 62 chr4 88812871 88813228 -66816892 + MTE2a LTR MaLR 6 377 -2 5 1262 303 311 52 72 chr4 88813365 88813559 -66816561 - MIR SINE MIR -51 211 22 5 1262 363 310 57 45 chr4 88813688 88813864 -66816256 - MLT1D LTR MaLR -11 494 317 5 1262 358 269 160 0 chr4 88814200 88814319 -66815801 - MLT1A LTR MaLR 0 374 237 5 1262 787 194 7 0 chr4 88815144 88815283 -66814837 - B1_Mur2 SINE Alu -7 142 3 5 1262 648 118 219 0 chr4 88815389 88815508 -66814612 + B1_Mus1 SINE Alu 4 148 0 5 1262 206 32 32 0 chr4 88816603 88816634 -66813486 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1262 662 54 0 0 chr4 88817257 88817349 -66812771 + L1_Mus2 LINE L1 6475 6566 0 5 1262 254 276 63 38 chr4 88819401 88819509 -66810611 - ORR1D1 LTR MaLR -184 190 81 5 1262 1200 157 18 18 chr4 88819509 88819730 -66810390 + URR1B DNA MER1_type 5 225 0 5 1262 254 276 63 38 chr4 88819730 88819779 -66810341 - ORR1D1 LTR MaLR -294 80 30 5 1262 287 360 7 32 chr4 88819876 88820031 -66810089 - ORR1E LTR MaLR -208 151 1 5 1262 3870 25 5 0 chr4 88820726 88821160 -66808960 - RLTR10C LTR ERVK 0 436 1 5 1262 186 224 0 0 chr4 88821177 88821226 -66808894 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1262 251 348 0 0 chr4 88821232 88821301 -66808819 - ID4 SINE ID -13 70 2 5 1262 385 266 41 41 chr4 88822030 88822175 -66807945 - MLT1A0 LTR MaLR 0 365 221 5 1262 740 118 467 0 chr4 88822215 88822470 -66807650 - ORR1D1 LTR MaLR 0 374 1 5 1262 343 316 87 29 chr4 88824393 88824420 -66805700 + B4A SINE B4 55 177 -115 5 1262 609 230 67 0 chr4 88824420 88824555 -66805565 + B1_Mur1 SINE Alu 6 149 0 5 1262 343 316 87 29 chr4 88824555 88824566 -66805554 + B4A SINE B4 178 237 -55 5 1262 276 30 0 0 chr4 88824854 88824887 -66805233 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1262 288 0 0 0 chr4 88824928 88824960 -66805160 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1262 662 217 22 7 chr4 88824970 88825109 -66805011 - RSINE1 SINE B4 -22 143 3 5 1262 477 314 26 0 chr4 88826790 88826984 -66803136 - L1MA4 LINE L1 -424 5876 5678 5 1262 2180 182 134 41 chr4 88827149 88827687 -66802433 - RMER1B Other Other 0 1066 479 5 1262 1178 89 87 34 chr4 88827954 88828162 -66801958 - ORR1A2 LTR MaLR -16 311 93 5 1262 297 0 0 0 chr4 88828162 88828195 -66801925 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1262 654 148 67 31 chr4 88828729 88828925 -66801195 - ORR1A2 LTR MaLR -133 196 1 5 1262 198 208 94 0 chr4 88829056 88829109 -66801011 + L2 LINE L2 1739 1796 -1623 5 1262 1377 216 73 28 chr4 88829294 88829655 -66800465 - MTE2b LTR MaLR 0 370 1 5 1262 222 128 0 0 chr4 88830057 88830096 -66800024 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1262 27 49 0 0 chr4 88830266 88830307 -66799813 + AT_rich Low_complexity Low_complexity 1 41 0 5 1262 345 24 0 0 chr4 88830400 88830442 -66799678 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1262 572 244 30 8 chr4 88830460 88830592 -66799528 - RSINE1 SINE B4 -29 136 2 5 1262 3055 15 0 0 chr4 88831108 88831445 -66798675 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1262 52686 18 13 7 chr4 88831455 88837868 -66792252 + IAPEz-int LTR ERVK 35 6481 0 5 1262 3066 12 0 0 chr4 88837868 88838205 -66791915 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1262 914 297 40 4 chr4 88838235 88838512 -66791608 - Lx8 LINE L1 -292 7181 6895 5 1262 260 288 0 0 chr4 88838517 88838576 -66791544 + Lx8 LINE L1 7268 7326 -147 5 1262 22 0 0 0 chr4 88838747 88838769 -66791351 + AT_rich Low_complexity Low_complexity 1 22 0 5 1262 353 289 83 71 chr4 88838904 88839201 -66790919 + MLT1A0 LTR MaLR 1 361 -4 5 1262 24 0 0 0 chr4 88839603 88839627 -66790493 + AT_rich Low_complexity Low_complexity 1 24 0 5 1262 675 218 22 50 chr4 88839651 88839787 -66790333 + MTD LTR MaLR 19 153 -266 5 1262 2258 129 0 3 chr4 88839787 88840114 -66790006 - ORR1A3 LTR MaLR 0 326 1 5 1262 675 218 22 50 chr4 88840114 88840156 -66789964 + MTD LTR MaLR 154 192 -227 5 1262 484 164 140 6 chr4 88840173 88840312 -66789808 + MTD LTR MaLR 249 421 0 5 1262 334 293 50 0 chr4 88840367 88840466 -66789654 - RSINE1 SINE B4 -17 148 45 5 1262 516 195 108 17 chr4 88840772 88840892 -66789228 + B1F SINE Alu 18 148 -1 5 1262 628 187 43 7 chr4 88841244 88841384 -66788736 - B1_Mur1 SINE Alu 0 149 5 5 1262 264 247 0 47 chr4 88841387 88841472 -66788648 - Lx8 LINE L1 -1281 6192 6112 5 1262 1599 281 88 41 chr4 88841475 88841868 -66788252 + Lx8 LINE L1 6285 6688 -785 5 1262 3816 118 18 4 chr4 88841868 88842427 -66787693 + RMER2 LTR ERV1 1 567 0 5 1262 1599 281 88 41 chr4 88842427 88842671 -66787449 + Lx8 LINE L1 6689 6952 -521 5 1262 342 0 0 0 chr4 88842671 88842709 -66787411 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1262 244 340 20 10 chr4 88842724 88842822 -66787298 + RMER5 LTR ERV1 416 514 -20 5 1262 341 264 37 19 chr4 88843234 88843342 -66786778 + RMER5 LTR ERV1 258 367 -167 5 1262 9081 93 21 30 chr4 88843345 88844940 -66785180 + Lx3B LINE L1 5403 6973 0 5 1262 684 223 185 0 chr4 88845201 88845385 -66784735 - MTD LTR MaLR -201 218 1 5 1262 417 322 48 55 chr4 88845961 88846250 -66783870 + B4A SINE B4 6 292 0 5 1262 232 300 56 0 chr4 88846609 88846699 -66783421 + ORR1E LTR MaLR 1 95 -264 5 1262 353 241 37 117 chr4 88846901 88847114 -66783006 + L1M4b LINE L1 3506 3591 -3743 5 1262 791 264 76 0 chr4 88847114 88847311 -66782809 - B3 SINE B2 -4 212 1 5 1262 250 265 38 192 chr4 88847311 88847410 -66782710 + L1M4b LINE L1 3261 3344 -3662 5 1262 1204 68 0 0 chr4 88847414 88847560 -66782560 + B1_Mus2 SINE Alu 2 147 0 5 1262 189 0 0 0 chr4 88847560 88847581 -66782539 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1262 18894 16 0 1 chr4 88847632 88849773 -66780347 + L1Md_A LINE L1 3447 5586 -297 5 1262 8621 29 1 1 chr4 88849773 88850769 -66779351 + L1Md_A LINE L1 5587 6582 0 5 1262 415 270 122 78 chr4 88850776 88851146 -66778974 + L1M4b LINE L1 3390 3775 -3231 5 1262 354 207 85 0 chr4 88851148 88851230 -66778890 + ORR1E LTR MaLR 4 92 -267 5 1262 1132 279 97 77 chr4 88851230 88851804 -66778316 + L1M4b LINE L1 4909 5473 -1533 5 1262 1414 162 25 0 chr4 88851804 88852039 -66778081 - Lx4A LINE L1 -4 7054 6814 5 1262 1132 279 97 77 chr4 88852039 88852390 -66777730 + L1M4b LINE L1 5474 5853 -1153 5 1262 3326 292 86 9 chr4 88852422 88853575 -66776545 + Lx8 LINE L1 6210 7450 -23 5 1262 267 243 107 9 chr4 88853580 88853692 -66776428 + L1M4b LINE L1 5888 6010 -990 5 1262 1049 279 58 38 chr4 88853705 88854104 -66776016 + Lx8 LINE L1 6944 7350 -123 5 1262 1038 264 67 11 chr4 88854120 88854428 -66775692 + Lx8 LINE L1 6709 7164 -480 5 1262 720 0 0 0 chr4 88854460 88854540 -66775580 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 1262 860 169 0 0 chr4 88854540 88854676 -66775444 - B1_Mus1 SINE Alu -12 136 1 5 1262 395 209 0 9 chr4 88854701 88854812 -66775308 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 1262 339 25 0 0 chr4 88854815 88854855 -66775265 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1262 337 237 31 0 chr4 88854860 88854957 -66775163 + L1M4b LINE L1 6022 6121 -885 5 1262 1305 87 66 0 chr4 88854972 88855155 -66774965 - B2_Mm2 SINE B2 0 195 1 5 1262 1610 196 70 13 chr4 88855158 88855541 -66774579 - MTD LTR MaLR -14 405 1 5 1262 4344 165 60 53 chr4 88855808 88856699 -66773421 + RMER19B LTR ERVK 1 897 -5 5 1262 1200 235 70 10 chr4 88856843 88857213 -66772907 - Lx9 LINE L1 -1673 5971 5541 5 1262 2138 243 133 42 chr4 88857203 88857902 -66772218 + Lx9 LINE L1 6327 7089 -555 5 1262 477 286 17 29 chr4 88857922 88858095 -66772025 + L1MB1 LINE L1 5894 6064 -104 6 1262 519 279 90 128 chr4 88858111 88858477 -66771643 - MTEb LTR MaLR 0 379 28 6 1262 282 300 22 0 chr4 88858411 88858501 -66771619 - MLT2B2 LTR ERVL -404 111 20 6 1262 1857 158 10 81 chr4 88858500 88858894 -66771226 + RLTR14 LTR ERV1 15 380 -2 6 1262 216 286 99 14 chr4 88858944 88859015 -66771105 + ID4 SINE ID 1 77 -6 6 1262 26 50 0 0 chr4 88859091 88859131 -66770989 + AT_rich Low_complexity Low_complexity 1 40 0 6 1262 375 41 0 0 chr4 88859141 88859190 -66770930 - L1_Mus2 LINE L1 -2 6564 6516 6 1262 2529 79 60 3 chr4 88859217 88859587 -66770533 - L1_Mus3 LINE L1 -5 6633 6243 6 1262 26 0 0 0 chr4 88859642 88859668 -66770452 + AT_rich Low_complexity Low_complexity 1 26 0 6 1262 4343 53 15 2 chr4 88859887 88860493 -66769627 + MT-int LTR MaLR 485 1098 0 6 1262 189 0 0 0 chr4 88860513 88860534 -66769586 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1262 753 247 10 63 chr4 88860615 88860822 -66769298 - B3 SINE B2 0 216 21 6 1262 7628 65 10 2 chr4 88860980 88862614 -66767506 - L1Md_F2 LINE L1 -12 6570 4922 6 1262 420 99 0 0 chr4 88863017 88863088 -66767032 + (G)n Simple_repeat Simple_repeat 1 71 0 6 1262 589 118 0 0 chr4 88864396 88864481 -66765639 - L1Md_F2 LINE L1 -937 4946 4862 6 1262 1166 0 0 0 chr4 88864482 88864607 -66765513 + L1_Mm LINE L1 5462 5586 -297 6 1262 9214 2 0 0 chr4 88864607 88865603 -66764517 + L1Md_A LINE L1 5587 6582 0 6 1262 26592 75 8 19 chr4 88865615 88865901 -66764219 - L1Md_F2 LINE L1 -1007 4876 4616 6 1262 1235 131 16 0 chr4 88865901 88866092 -66764028 - B2_Mm2 SINE B2 0 195 2 6 1262 26592 75 8 19 chr4 88866092 88866153 -66763967 - L1Md_F2 LINE L1 -1268 4615 4561 6 1262 3481 47 28 5 chr4 88866153 88866579 -66763541 + RLTR10C LTR ERVK 1 436 0 6 157 26592 75 8 19 chr4 88866579 88868679 -66761441 - L1Md_F2 LINE L1 -1323 4560 2462 6 1263 3057 45 16 0 chr4 88868679 88869053 -66761067 - L1Md_F2 LINE L1 0 6582 6203 6 1263 26592 80 12 37 chr4 88869053 88871138 -66758982 - L1Md_F2 LINE L1 -3422 2461 429 6 1263 3203 59 15 0 chr4 88871139 88871528 -66758592 + MTA_Mm LTR MaLR 2 396 0 6 1263 2013 168 11 0 chr4 88871528 88871879 -66758241 + Lx2B LINE L1 5766 6120 -880 6 1263 38596 15 3 7 chr4 88871879 88877259 -66752861 + L1Md_A LINE L1 235 5586 -297 6 1263 8774 24 0 0 chr4 88877259 88878255 -66751865 + L1Md_A LINE L1 5587 6582 0 6 1263 1753 147 22 13 chr4 88878304 88878615 -66751505 + Lx2B LINE L1 6099 6412 -588 6 1263 1176 240 29 38 chr4 88878615 88878931 -66751189 - ORR1E LTR MaLR -1 358 46 6 1263 290 220 17 0 chr4 88879021 88879080 -66751040 + 5S rRNA rRNA 18 77 -44 6 1263 1140 134 41 0 chr4 88879224 88879396 -66750724 + B2_Mm1t SINE B2 1 179 -14 6 1263 281 155 15 27 chr4 88879447 88879520 -66750600 + B2_Mm2 SINE B2 47 121 -95 6 1263 25 31 0 0 chr4 88879526 88879558 -66750562 + AT_rich Low_complexity Low_complexity 1 32 0 6 1263 903 218 31 10 chr4 88879902 88880097 -66750023 - B3 SINE B2 -9 207 9 6 1263 594 107 0 0 chr4 88880097 88880181 -66749939 + RMER13B LTR ERVK 1 84 -824 6 1263 230 288 142 14 chr4 88880599 88880740 -66749380 + RMER21A LTR ERV1 526 684 -263 6 1263 342 202 82 31 chr4 88881433 88881494 -66748626 + RMER15 LTR ERVL 474 531 -44 6 1263 471 18 0 0 chr4 88881494 88881550 -66748570 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1263 342 202 82 31 chr4 88881550 88881585 -66748535 + RMER15 LTR ERVL 532 574 -1 6 1263 5430 202 98 30 chr4 88881658 88883081 -66747039 - Lx9 LINE L1 0 7644 6124 6 1263 726 322 108 82 chr4 88883083 88883682 -66746438 - Lx7 LINE L1 -30 7443 6818 6 1263 319 244 24 24 chr4 88883698 88883782 -66746338 - L1_Mur3 LINE L1 -3617 2263 2180 6 1263 21 0 0 0 chr4 88883782 88883803 -66746317 + AT_rich Low_complexity Low_complexity 1 21 0 6 1263 447 19 0 0 chr4 88883821 88883873 -66746247 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1263 1591 282 79 39 chr4 88883885 88884494 -66745626 - Lx9 LINE L1 -215 7429 6797 6 1263 885 239 0 15 chr4 88884501 88884764 -66745356 - L1_Rod LINE L1 -4442 1405 1147 6 1263 21848 119 14 27 chr4 88884801 88888974 -66741146 + L1Md_F LINE L1 261 4400 -1483 6 1263 720 112 9 0 chr4 88888974 88889090 -66741030 + L1_Mus1 LINE L1 6451 6567 0 6 1263 5104 99 43 23 chr4 88889100 88889875 -66740245 + Lx LINE L1 5863 6652 -2 6 1263 1208 213 148 26 chr4 88889903 88890255 -66739865 - L1_Rod LINE L1 -6483 689 295 6 1263 558 324 33 9 chr4 88891134 88891349 -66738771 + ID_B1 SINE B4 5 224 0 6 1263 777 259 6 0 chr4 88891375 88891545 -66738575 + B3A SINE B2 1 171 -27 6 1263 963 283 93 51 chr4 88891997 88892713 -66737407 - L1MD1 LINE L1 -84 6158 5363 6 1263 5093 93 27 1 chr4 88892713 88893422 -66736698 - Lx3_Mus LINE L1 -8 7001 6275 6 1263 663 263 67 40 chr4 88893422 88893690 -66736430 - L1MD1 LINE L1 -997 5362 5081 6 1263 458 143 0 0 chr4 88894035 88894098 -66736022 + Lx8 LINE L1 7270 7332 -141 6 1263 1460 105 0 0 chr4 88894101 88894291 -66735829 - L1_Mur1 LINE L1 -294 5592 5403 6 1263 1461 54 32 5 chr4 88894307 88894493 -66735627 + B2_Mm2 SINE B2 1 191 -4 6 1263 351 245 48 19 chr4 88894496 88894600 -66735520 - RMER5 LTR ERV1 -168 366 260 6 1263 625 127 291 0 chr4 88894600 88894734 -66735386 + Lx3_Mus LINE L1 6824 6996 -13 6 1263 519 95 0 0 chr4 88894743 88894817 -66735303 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 6 1263 1076 72 46 0 chr4 88894855 88895008 -66735112 + B2_Mm2 SINE B2 2 161 -34 6 1263 180 0 0 0 chr4 88895009 88895029 -66735091 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1263 247 245 115 19 chr4 88895049 88895153 -66734967 + Lx8 LINE L1 7359 7472 -1 6 1263 510 285 31 12 chr4 88895746 88895924 -66734196 - L1MD1 LINE L1 -1143 5003 4823 6 1263 207 0 0 0 chr4 88895937 88895960 -66734160 + (CCA)n Simple_repeat Simple_repeat 1 23 0 6 1263 708 219 30 96 chr4 88896023 88896103 -66734017 - B3 SINE B2 -5 211 135 6 1263 3028 68 5 8 chr4 88896103 88896500 -66733620 + MTA_Mm LTR MaLR 1 396 0 6 1263 708 219 35 17 chr4 88896500 88896619 -66733501 - B3 SINE B2 -58 158 38 6 1263 1228 251 106 57 chr4 88896772 88897030 -66733090 + RLTR20B3 LTR ERVK 24 309 -268 6 1263 1104 90 7 0 chr4 88897030 88897175 -66732945 + B1_Mus2 SINE Alu 1 146 -1 6 1263 265 24 0 45 chr4 88897180 88897224 -66732896 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 6 1263 1228 251 106 57 chr4 88897224 88897393 -66732727 + RLTR20B3 LTR ERVK 310 468 -109 6 1263 396 0 0 0 chr4 88897393 88897437 -66732683 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1263 1228 251 106 57 chr4 88897437 88897530 -66732590 + RLTR20B3 LTR ERVK 469 576 -1 6 1263 454 272 86 17 chr4 88897549 88897781 -66732339 - L1MD1 LINE L1 -1601 4545 4298 6 1263 695 206 110 0 chr4 88897782 88897937 -66732183 + ORR1C1 LTR MaLR 207 378 0 6 1263 216 323 119 52 chr4 88897937 88898205 -66731915 - L2 LINE L2 -983 2436 2151 6 1263 3310 70 3 0 chr4 88898505 88899224 -66730896 + L1VL2 LINE L1 598 1318 -2297 6 1263 2745 91 2 18 chr4 88899219 88899612 -66730508 + L1_Mus4 LINE L1 6203 6589 -47 6 1263 2140 217 88 22 chr4 88899745 88900347 -66729773 - RLTR26 LTR ERVK 0 642 1 6 1263 321 270 33 75 chr4 88900428 88900471 -66729649 + MT2B2 LTR ERVL 123 160 -424 6 1263 452 272 19 19 chr4 88900471 88900576 -66729544 + B1_Mur2 SINE Alu 4 108 -41 6 1263 2357 159 53 34 chr4 88901237 88901707 -66728413 + Lx9 LINE L1 6986 7464 -180 6 1263 477 0 0 0 chr4 88901707 88901760 -66728360 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1263 180 0 0 0 chr4 88901821 88901841 -66728279 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1263 418 223 264 0 chr4 88901850 88901998 -66728122 + B3 SINE B2 29 215 -1 6 1263 489 262 0 0 chr4 88902255 88902362 -66727758 + B1_Mur3 SINE Alu 43 149 0 6 1263 180 111 0 0 chr4 88902364 88902391 -66727729 + (GGA)n Simple_repeat Simple_repeat 3 29 0 6 1263 486 49 0 0 chr4 88902401 88902462 -66727658 + (GGGGA)n Simple_repeat Simple_repeat 5 65 0 6 1263 665 243 118 30 chr4 88902534 88902899 -66727221 + L1MC LINE L1 4094 4490 -1656 6 1263 369 278 19 39 chr4 88902903 88903027 -66727093 + RSINE1 SINE B4 5 118 -174 6 1263 830 89 6 34 chr4 88903205 88903380 -66726740 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 1263 270 0 0 0 chr4 88903380 88903409 -66726711 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1263 626 245 33 48 chr4 88903415 88903625 -66726495 + L1MC LINE L1 4477 4683 -1463 6 1263 234 208 94 94 chr4 88903638 88903755 -66726365 + RMER15 LTR ERVL 14 130 -445 6 1263 436 276 61 43 chr4 88903798 88903961 -66726159 + RMER15 LTR ERVL 256 421 -154 6 1263 784 262 39 43 chr4 88903978 88904164 -66725956 + RMER15-int LTR ERVL 680 867 -4132 6 1263 3443 38 2 0 chr4 88904164 88904559 -66725561 + MTA_Mm LTR MaLR 1 396 0 6 1263 1482 288 173 29 chr4 88904559 88905218 -66724902 + RMER15-int LTR ERVL 868 1619 -3380 6 1263 227 276 20 30 chr4 88906032 88906133 -66723987 + MER63D DNA AcHobo 5 104 -957 6 1263 1305 104 5 11 chr4 88906141 88906326 -66723794 + B2_Mm1t SINE B2 1 184 -9 6 1263 447 174 12 0 chr4 88906360 88906446 -66723674 - B1_Mur3 SINE Alu -1 148 62 6 1263 192 228 0 0 chr4 88906464 88906521 -66723599 + A-rich Low_complexity Low_complexity 1 57 0 6 1263 5431 211 85 24 chr4 88906566 88906969 -66723151 - Lx7 LINE L1 -465 7231 6760 6 1263 213 39 0 0 chr4 88906969 88906995 -66723125 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1263 5431 211 85 24 chr4 88906995 88907821 -66722299 - Lx7 LINE L1 -937 6759 5926 6 1263 1704 114 107 38 chr4 88907841 88908159 -66721961 + MTC LTR MaLR 12 351 -70 6 1263 1305 104 5 11 chr4 88908271 88908456 -66721664 + B2_Mm1t SINE B2 1 184 -9 6 1263 447 174 12 0 chr4 88908490 88908576 -66721544 - B1_Mur3 SINE Alu -1 148 62 6 1263 192 228 0 0 chr4 88908594 88908651 -66721469 + A-rich Low_complexity Low_complexity 1 57 0 6 1263 5378 213 85 24 chr4 88908696 88909099 -66721021 - Lx7 LINE L1 -465 7231 6760 6 1263 213 39 0 0 chr4 88909099 88909125 -66720995 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1263 5378 213 85 24 chr4 88909125 88909951 -66720169 - Lx7 LINE L1 -937 6759 5926 6 1263 1704 114 107 38 chr4 88909971 88910289 -66719831 + MTC LTR MaLR 12 351 -70 6 1263 1799 182 124 11 chr4 88910471 88910603 -66719517 - MTC LTR MaLR 0 421 268 6 1263 1620 0 0 0 chr4 88910603 88910811 -66719309 + (CAGGG)n Simple_repeat Simple_repeat 1 208 0 6 1263 1799 182 124 11 chr4 88910811 88911055 -66719065 - MTC LTR MaLR -154 267 3 6 1263 22 35 0 0 chr4 88911225 88911254 -66718866 + AT_rich Low_complexity Low_complexity 1 29 0 6 1263 720 227 54 22 chr4 88911484 88911697 -66718423 + MTD LTR MaLR 177 419 0 6 1263 221 215 37 25 chr4 88912188 88912269 -66717851 + A-rich Low_complexity Low_complexity 3 84 0 6 1263 1292 19 0 0 chr4 88912867 88913026 -66717094 + B2_Mm1a SINE B2 1 159 -34 7 1263 288 0 0 0 chr4 88913026 88913058 -66717062 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1263 1061 106 0 77 chr4 88913058 88913093 -66717027 + B2_Mm2 SINE B2 159 180 -15 7 1263 432 314 123 46 chr4 88913082 88913342 -66716778 - MLT1D LTR MaLR -100 405 126 7 1263 299 276 106 126 chr4 88913354 88913561 -66716559 + MLT1D LTR MaLR 23 225 -280 7 1263 243 0 70 23 chr4 88913608 88913651 -66716469 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1263 1744 164 153 16 chr4 88913678 88914045 -66716075 + MTC LTR MaLR 5 421 0 7 1263 229 103 0 49 chr4 88914260 88914321 -66715799 + T-rich Low_complexity Low_complexity 2 59 0 7 1263 1340 110 11 0 chr4 88914388 88914579 -66715541 + B2_Mm1t SINE B2 1 193 0 7 1263 187 321 18 0 chr4 88914756 88914812 -66715308 - MIRb SINE MIR -92 176 120 7 1263 1212 108 11 5 chr4 88915003 88915190 -66714930 + B2_Mm2 SINE B2 1 188 -7 7 1263 183 129 0 0 chr4 88915467 88915498 -66714622 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1263 496 281 14 61 chr4 88915498 88915646 -66714474 - B3A SINE B2 -51 147 7 7 1263 238 313 81 7 chr4 88916180 88916328 -66713792 - L1MC LINE L1 -2132 5750 5592 7 1263 640 191 138 117 chr4 88916473 88916704 -66713416 - Lx5 LINE L1 0 7050 6815 7 1263 324 64 0 0 chr4 88916771 88916818 -66713302 + (ATG)n Simple_repeat Simple_repeat 1 47 0 7 1263 898 164 0 14 chr4 88916819 88916967 -66713153 - B1_Mur2 SINE Alu -1 148 3 7 1263 893 81 6 97 chr4 88917092 88917257 -66712863 + L1_Mus2 LINE L1 6417 6566 0 7 1263 767 135 0 8 chr4 88917650 88917784 -66712336 + (TA)n Simple_repeat Simple_repeat 2 134 0 7 1263 979 145 122 25 chr4 88918281 88918628 -66711492 + Lx4A LINE L1 6619 7057 -1 7 1263 575 51 13 0 chr4 88918644 88918723 -66711397 + (CAAAC)n Simple_repeat Simple_repeat 2 81 0 7 1263 495 0 0 0 chr4 88919094 88919149 -66710971 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1263 233 241 99 25 chr4 88919448 88919529 -66710591 - B1F1 SINE Alu -52 97 11 7 1263 216 0 0 0 chr4 88919720 88919744 -66710376 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1263 302 186 14 28 chr4 88920398 88920470 -66709650 - Lx3C LINE L1 -2 6974 6904 7 1263 289 62 0 40 chr4 88920482 88920532 -66709588 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 7 1263 1094 67 0 0 chr4 88921599 88921734 -66708386 - B1_Mus1 SINE Alu -11 137 3 7 1263 513 255 64 29 chr4 88921913 88922081 -66708039 - B3A SINE B2 -40 176 2 7 1263 216 0 0 0 chr4 88922340 88922364 -66707756 + (CGGG)n Simple_repeat Simple_repeat 3 26 0 7 1263 1155 209 127 50 chr4 88923747 88924109 -66706011 - MTD LTR MaLR 0 419 30 7 1263 507 296 68 25 chr4 88924130 88924293 -66705827 + ID_B1 SINE B4 37 206 -18 7 1263 293 183 195 0 chr4 88924314 88924396 -66705724 + Lx6 LINE L1 7358 7455 -5 7 1263 479 16 16 0 chr4 88924422 88924486 -66705634 + B1_Mus2 SINE Alu 83 147 0 7 1263 302 115 19 0 chr4 88924486 88924538 -66705582 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 7 1263 350 252 44 53 chr4 88924882 88924995 -66705125 + B3 SINE B2 105 216 0 7 1263 489 237 49 41 chr4 88925220 88925343 -66704777 + RSINE1 SINE B4 9 132 -33 7 1263 495 0 0 0 chr4 88926074 88926129 -66703991 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1263 432 100 0 0 chr4 88926500 88926580 -66703540 + Lx3_Mus LINE L1 6015 6094 -915 7 1263 302 236 56 11 chr4 88926760 88926850 -66703270 - PB1D9 SINE Alu -3 117 24 7 1263 833 144 23 0 chr4 88926898 88927072 -66703048 + CT-rich Low_complexity Low_complexity 1 178 0 7 1263 265 176 0 48 chr4 88929031 88929100 -66701020 - B1_Mus2 SINE Alu -44 76 18 7 1263 666 130 22 0 chr4 88929286 88929383 -66700737 + polypurine Low_complexity Low_complexity 1 99 0 7 1263 333 0 0 0 chr4 88929383 88929420 -66700700 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1263 666 130 22 0 chr4 88929420 88929460 -66700660 + polypurine Low_complexity Low_complexity 100 140 0 7 1263 351 0 0 0 chr4 88930357 88930396 -66699724 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1263 30 0 0 0 chr4 88930783 88930813 -66699307 + AT_rich Low_complexity Low_complexity 1 30 0 7 1263 366 212 0 118 chr4 88930923 88931261 -66698859 + GA-rich Low_complexity Low_complexity 1 298 0 7 1263 241 231 0 126 chr4 88931282 88931480 -66698640 + GA-rich Low_complexity Low_complexity 3 175 0 7 1263 1079 108 108 0 chr4 88931878 88932044 -66698076 + B2_Mm1t SINE B2 2 185 -8 7 1263 219 139 0 0 chr4 88933050 88933086 -66697034 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1263 250 91 36 0 chr4 88933706 88933761 -66696359 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 7 1263 1053 49 0 7 chr4 88933772 88933915 -66696205 - B1_Mus1 SINE Alu 0 148 7 7 1263 595 170 12 67 chr4 88933915 88933934 -66696186 - ID_B1 SINE B4 0 222 70 7 1263 706 221 36 0 chr4 88935837 88935977 -66694143 + B1_Mur2 SINE Alu 5 149 0 7 1263 24 32 0 0 chr4 88936014 88936045 -66694075 + AT_rich Low_complexity Low_complexity 1 31 0 7 1263 499 168 178 0 chr4 88936142 88936249 -66693871 + B1_Mur2 SINE Alu 15 140 -9 7 1263 207 100 0 0 chr4 88936876 88936906 -66693214 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1263 721 160 107 0 chr4 88936908 88937039 -66693081 - B1_Mur3 SINE Alu -4 145 1 7 1263 243 325 13 0 chr4 88938126 88938203 -66691917 - ID_B1 SINE B4 -20 204 127 7 1263 271 308 55 0 chr4 88938231 88938322 -66691798 - ID_B1 SINE B4 -92 132 37 7 1263 1117 67 0 0 chr4 88938399 88938534 -66691586 + B1_Mus2 SINE Alu 3 137 -10 7 1263 670 125 32 40 chr4 88938910 88939035 -66691085 + B1_Mus2 SINE Alu 22 145 -2 7 1263 180 0 0 0 chr4 88939192 88939212 -66690908 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1263 201 132 0 0 chr4 88939661 88939699 -66690421 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 7 1263 324 0 0 0 chr4 88939859 88939895 -66690225 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1263 227 233 0 0 chr4 88939976 88940019 -66690101 + T-rich Low_complexity Low_complexity 1 43 0 7 1263 300 291 25 33 chr4 88941194 88941315 -66688805 + C-rich Low_complexity Low_complexity 6 125 0 7 1263 501 292 231 21 chr4 88943031 88943269 -66686851 + B4A SINE B4 3 290 -2 7 1263 268 326 116 0 chr4 88943338 88943424 -66686696 + PB1D10 SINE Alu 14 109 -8 7 1263 355 291 61 85 chr4 88943436 88943601 -66686519 + B4A SINE B4 2 162 -130 7 1263 302 180 30 10 chr4 88944712 88944813 -66685307 + (TA)n Simple_repeat Simple_repeat 1 103 0 7 1263 25 0 0 0 chr4 88944950 88944975 -66685145 + AT_rich Low_complexity Low_complexity 1 25 0 7 1263 1186 62 0 0 chr4 88945980 88946126 -66683994 - B1_Mus2 SINE Alu -1 146 1 7 1263 24 53 0 0 chr4 88946787 88946825 -66683295 + AT_rich Low_complexity Low_complexity 1 38 0 7 1263 225 253 232 0 chr4 88947584 88947679 -66682441 - Lx7 LINE L1 -17 7679 7563 7 1263 2377 211 123 12 chr4 88947802 88948386 -66681734 - Lx7 LINE L1 -401 7295 6647 7 1263 810 282 70 74 chr4 88948429 88948904 -66681216 - L1_Mur3 LINE L1 -6413 1299 827 7 1263 2565 125 22 2 chr4 88949195 88949605 -66680515 - Lx2 LINE L1 -803 6194 5777 7 1263 554 121 61 0 chr4 88949803 88949902 -66680218 + B1_Mus1 SINE Alu 1 105 -43 7 1263 268 267 40 0 chr4 88950366 88950441 -66679679 + L1MA7 LINE L1 6173 6250 -41 7 1263 252 206 162 0 chr4 88951356 88951424 -66678696 - B3A SINE B2 -119 79 1 7 1263 366 143 0 0 chr4 88951447 88951510 -66678610 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1263 224 340 50 40 chr4 88951511 88951612 -66678508 - B3A SINE B2 -15 183 82 7 1263 212 329 47 0 chr4 88952045 88952130 -66677990 + PB1D7 SINE Alu 27 115 -5 7 1263 192 111 0 0 chr4 88952152 88952188 -66677932 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 7 1263 3177 222 92 44 chr4 88953543 88953671 -66676449 - Lx6 LINE L1 -10 7450 7312 7 1263 1187 55 0 7 chr4 88953671 88953819 -66676301 + B1_Mus1 SINE Alu 2 148 0 7 1263 3177 222 92 44 chr4 88953819 88954548 -66675572 - Lx6 LINE L1 -149 7311 6552 7 1263 862 221 209 29 chr4 88954622 88954962 -66675158 + MTD LTR MaLR 19 419 0 7 1263 22 0 0 0 chr4 88957447 88957469 -66672651 + AT_rich Low_complexity Low_complexity 1 22 0 7 1263 297 0 0 0 chr4 88958553 88958586 -66671534 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1263 434 330 79 29 chr4 88958586 88958864 -66671256 - B4A SINE B4 0 292 1 7 1263 438 20 0 0 chr4 88959058 88959109 -66671011 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1263 423 178 115 62 chr4 88959683 88959779 -66670341 + PB1D7 SINE Alu 20 120 0 7 1263 196 374 120 11 chr4 88959942 88960126 -66669994 - MIRb SINE MIR -45 223 20 7 1263 394 234 102 31 chr4 88960874 88961002 -66669118 - B1F SINE Alu -3 146 10 7 1263 254 259 0 0 chr4 88960956 88961014 -66669106 - B4A SINE B4 -152 140 83 7 1263 493 296 50 66 chr4 88961323 88961565 -66668555 - L1MC5 LINE L1 -1068 6893 6656 7 1263 2705 60 40 6 chr4 88962056 88962465 -66667655 - L1Md_F2 LINE L1 0 6582 6201 7 1264 3429 35 0 2 chr4 89012883 89013279 -66616841 - MTA_Mm LTR MaLR -1 395 1 1 1264 203 0 0 36 chr4 89013324 89013352 -66616768 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2 1264 565 291 102 4 chr4 89013352 89013469 -66616651 - L1M2 LINE L1 -690 5610 5493 3 1264 225 0 0 0 chr4 89013469 89013494 -66616626 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1264 565 291 102 4 chr4 89013494 89013621 -66616499 - L1M2 LINE L1 -808 5492 5344 3 1264 774 197 212 6 chr4 89013675 89013854 -66616266 - B3 SINE B2 0 216 1 5 1264 1107 88 7 0 chr4 89013948 89014095 -66616025 - B1_Mus1 SINE Alu 0 148 1 6 1264 470 303 78 6 chr4 89014285 89014451 -66615669 - B3A SINE B2 -20 178 1 7 1264 1320 120 16 0 chr4 89014599 89014790 -66615330 - B2_Mm2 SINE B2 -1 194 1 8 1264 429 36 0 0 chr4 89017757 89017812 -66612308 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1264 1436 97 0 5 chr4 89017862 89018058 -66612062 - B2_Mm2 SINE B2 0 195 1 1 1264 1501 43 0 5 chr4 89018062 89018250 -66611870 - L1_Mus1 LINE L1 -46 6521 6335 1 1264 207 69 0 0 chr4 89019263 89019292 -66610828 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 1 1264 207 0 0 0 chr4 89019632 89019655 -66610465 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 1 1264 216 225 0 0 chr4 89019660 89019700 -66610420 + L2c LINE L2 3294 3333 -54 1 1264 703 170 72 29 chr4 89021278 89021417 -66608703 + B1_Mur3 SINE Alu 5 149 0 1 1264 23 33 0 0 chr4 89021683 89021713 -66608407 + AT_rich Low_complexity Low_complexity 1 30 0 1 1264 396 207 0 0 chr4 89022308 89022424 -66607696 + CT-rich Low_complexity Low_complexity 1 116 0 1 1264 453 66 0 0 chr4 89022691 89022752 -66607368 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1 1264 360 182 32 64 chr4 89023274 89023368 -66606752 + MLT1C LTR MaLR 95 185 -282 1 1264 230 363 83 6 chr4 89023393 89023562 -66606558 + MLT1C LTR MaLR 278 459 -8 1 1264 410 86 35 0 chr4 89024735 89024793 -66605327 - Lx LINE L1 -686 5950 5891 2 1264 4909 96 20 21 chr4 89024793 89025483 -66604637 + Lx LINE L1 5945 6634 -20 2 1264 1403 85 27 0 chr4 89025483 89025671 -66604449 + B2_Mm2 SINE B2 2 194 -1 2 1264 4909 96 20 21 chr4 89025671 89025685 -66604435 + Lx LINE L1 6635 6648 -6 2 1264 25 0 0 0 chr4 89026052 89026077 -66604043 + AT_rich Low_complexity Low_complexity 1 25 0 2 1264 402 121 0 0 chr4 89026196 89026262 -66603858 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1264 407 36 0 0 chr4 89027395 89027450 -66602670 + L1_Mus3 LINE L1 6564 6618 -20 2 1264 199 372 12 0 chr4 89027840 89027926 -66602194 - L2b LINE L2 0 3375 3289 2 1264 309 323 75 0 chr4 89029942 89030035 -66600085 - B1F SINE Alu -41 108 9 2 1264 420 97 0 0 chr4 89030499 89030561 -66599559 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1264 3851 194 53 79 chr4 89030586 89031244 -66598876 + Lx7 LINE L1 6712 7363 -333 2 1264 405 0 0 0 chr4 89031244 89031289 -66598831 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1264 3851 194 53 79 chr4 89031289 89031641 -66598479 + Lx7 LINE L1 7364 7696 0 2 1264 180 0 0 0 chr4 89031851 89031871 -66598249 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1264 308 216 10 0 chr4 89032518 89032615 -66597505 + GA-rich Low_complexity Low_complexity 1 98 0 3 1264 445 182 18 92 chr4 89034163 89034272 -66595848 + B3A SINE B2 1 101 -97 3 1264 522 0 0 0 chr4 89034274 89034332 -66595788 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 3 1264 1210 41 7 0 chr4 89034978 89035123 -66594997 - B1_Mm SINE Alu 0 147 2 3 1264 214 290 16 0 chr4 89035166 89035228 -66594892 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 3 1264 887 40 48 16 chr4 89036795 89036921 -66593199 + B1_Mus1 SINE Alu 19 148 0 3 1264 40 0 0 0 chr4 89036921 89036961 -66593159 + AT_rich Low_complexity Low_complexity 1 40 0 3 1264 6555 8 0 0 chr4 89037079 89037801 -66592319 + L1Md_T LINE L1 4865 5586 -297 3 1264 8614 32 1 0 chr4 89037801 89038796 -66591324 + L1Md_T LINE L1 5587 6582 0 3 1264 379 282 12 0 chr4 89039274 89039359 -66590761 + B1F SINE Alu 35 120 -29 3 1264 282 350 33 8 chr4 89039731 89039852 -66590268 - MIR SINE MIR -77 185 62 4 1264 195 42 0 0 chr4 89040468 89040492 -66589628 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1264 1174 98 34 28 chr4 89040492 89040671 -66589449 - B2_Mm2 SINE B2 -15 180 1 4 1264 1071 197 72 8 chr4 89042301 89042537 -66587583 - MTC LTR MaLR -13 408 158 4 1264 333 217 45 0 chr4 89042618 89042752 -66587368 - B3 SINE B2 0 216 40 4 1264 707 194 42 0 chr4 89042744 89042888 -66587232 - MTC LTR MaLR -271 150 1 4 1264 976 190 30 15 chr4 89042955 89043158 -66586962 + B3 SINE B2 2 207 -9 4 1264 349 261 68 0 chr4 89043321 89043409 -66586711 + PB1D10 SINE Alu 1 94 -23 4 1264 290 330 80 17 chr4 89043662 89043838 -66586282 - MLT1I LTR MaLR 0 411 225 4 1264 1085 198 34 0 chr4 89043929 89044136 -66585984 - B3 SINE B2 -1 215 2 4 1264 1066 172 29 24 chr4 89044449 89044657 -66585463 + B3 SINE B2 2 210 -6 4 1264 1370 109 31 22 chr4 89045070 89045294 -66584826 - Lx2 LINE L1 0 6997 6772 5 1264 3080 94 36 2 chr4 89045289 89045735 -66584385 - Lx2 LINE L1 -354 6643 6183 5 1264 362 292 11 0 chr4 89045800 89045889 -66584231 + ORR1E LTR MaLR 3 92 -267 5 1264 229 268 0 78 chr4 89046003 89046080 -66584040 + MTEb LTR MaLR 309 379 0 5 1264 643 258 38 25 chr4 89046186 89046345 -66583775 - RSINE1 SINE B4 -2 163 3 5 1264 240 278 174 10 chr4 89046920 89047018 -66583102 + MIRb SINE MIR 29 142 -126 5 1264 324 0 0 0 chr4 89047204 89047240 -66582880 + (TGG)n Simple_repeat Simple_repeat 3 38 0 5 1264 242 143 0 20 chr4 89047240 89047290 -66582830 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1264 756 52 0 0 chr4 89047532 89047629 -66582491 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 1264 888 159 0 0 chr4 89047630 89047787 -66582333 + C-rich Low_complexity Low_complexity 4 160 0 5 1264 612 0 0 0 chr4 89047787 89047855 -66582265 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 5 1264 366 336 23 0 chr4 89047861 89047992 -66582128 - B4A SINE B4 -148 144 11 6 1264 1188 55 0 0 chr4 89048832 89048978 -66581142 - B1_Mus1 SINE Alu -2 146 1 6 1264 538 176 59 0 chr4 89049012 89049131 -66580989 - Lx9 LINE L1 -7 7637 7512 6 1264 691 241 0 0 chr4 89049131 89049276 -66580844 - Lx9 LINE L1 -415 7229 7085 6 1264 306 0 0 0 chr4 89049567 89049601 -66580519 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1264 235 179 35 18 chr4 89049679 89049736 -66580384 - MIRc SINE MIR -51 217 160 6 1264 588 29 0 0 chr4 89051117 89051187 -66578933 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1264 421 202 28 130 chr4 89051224 89051332 -66578788 + PB1D10 SINE Alu 13 109 -8 6 1264 548 254 28 21 chr4 89051335 89051480 -66578640 - Lx9 LINE L1 -230 7414 7269 6 1264 497 146 0 12 chr4 89051482 89051565 -66578555 + Lx9 LINE L1 7402 7483 -161 6 1264 357 145 0 0 chr4 89051565 89051627 -66578493 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1264 1389 200 75 78 chr4 89051627 89052301 -66577819 + L1_Mur3 LINE L1 3873 4443 -1437 7 1264 419 216 24 8 chr4 89052480 89052606 -66577514 + Lx9 LINE L1 7517 7644 0 6 1264 656 181 76 48 chr4 89052974 89053119 -66577001 - B1_Mur4 SINE Alu 0 150 2 7 1264 1368 67 0 0 chr4 89054244 89054678 -66575442 + (TG)n Simple_repeat Simple_repeat 1 434 0 7 1264 469 135 108 0 chr4 89054678 89054789 -66575331 + Lx9 LINE L1 7520 7642 -2 7 1264 180 0 0 0 chr4 89054969 89054989 -66575131 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 7 1264 219 88 0 0 chr4 89055141 89055175 -66574945 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1264 206 207 17 0 chr4 89055731 89055789 -66574331 + CT-rich Low_complexity Low_complexity 3 61 0 7 1264 238 268 110 0 chr4 89055798 89055880 -66574240 - PB1D10 SINE Alu -16 101 11 7 1264 843 262 33 73 chr4 89056785 89057086 -66573034 + B4 SINE B4 2 290 -2 7 1264 262 263 85 34 chr4 89057091 89057209 -66572911 - L1MA9 LINE L1 -32 6280 6157 7 1264 321 291 117 4 chr4 89057490 89057738 -66572382 - Charlie5 DNA MER1_type -104 2520 2245 8 1264 23 0 0 0 chr4 89057750 89057773 -66572347 + AT_rich Low_complexity Low_complexity 1 23 0 8 1264 234 62 0 0 chr4 89058467 89058499 -66571621 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1264 25 65 0 0 chr4 89058677 89058723 -66571397 + AT_rich Low_complexity Low_complexity 1 46 0 8 1264 604 196 244 52 chr4 89058732 89058904 -66571216 - B3 SINE B2 -10 206 2 8 1264 381 191 16 0 chr4 89059102 89059165 -66570955 - B1_Mus1 SINE Alu -80 68 5 8 1264 501 17 0 0 chr4 89059776 89059834 -66570286 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 8 1264 654 245 29 29 chr4 89061033 89061221 -66568899 + B3A SINE B2 1 185 -10 8 1264 456 19 0 0 chr4 89061302 89061355 -66568765 + (TATG)n Simple_repeat Simple_repeat 4 56 0 8 1264 804 190 35 7 chr4 89061378 89061521 -66568599 - B1_Mur1 SINE Alu 0 149 3 8 1264 183 162 0 0 chr4 89061588 89061625 -66568495 + CT-rich Low_complexity Low_complexity 4 40 0 9 1264 228 309 18 0 chr4 89061664 89061719 -66568401 - ID_B1 SINE B4 -86 138 83 9 1264 276 238 15 31 chr4 89062131 89062196 -66567924 + ID4 SINE ID 6 69 -14 9 1264 247 271 27 41 chr4 89062132 89062205 -66567915 + tRNA-Ala-GCA tRNA tRNA 1 72 -3 9 1264 3440 84 4 43 chr4 89063141 89063611 -66566509 - L1_Mus2 LINE L1 0 6566 6115 9 1264 8126 133 3 91 chr4 89063612 89064847 -66565273 + L1_Mus4 LINE L1 4478 5583 -300 9 1264 3137 89 2 2 chr4 89064847 89065243 -66564877 - MTA_Mm LTR MaLR 0 396 1 9 1264 8126 92 9 8 chr4 89065243 89066299 -66563821 + L1_Mus4 LINE L1 5584 6636 0 9 1264 288 186 0 0 chr4 89066355 89066414 -66563706 + (TA)n Simple_repeat Simple_repeat 2 60 0 9 1264 185 119 0 23 chr4 89066411 89066454 -66563666 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 9 1264 405 0 0 0 chr4 89067129 89067174 -66562946 + (GTGTG)n Simple_repeat Simple_repeat 2 46 0 9 1264 191 235 29 29 chr4 89067352 89067422 -66562698 - L2 LINE L2 -930 2489 2420 1 1264 489 181 240 0 chr4 89067516 89067687 -66562433 - Lx9 LINE L1 0 7644 7433 1 1264 596 182 145 7 chr4 89067685 89067823 -66562297 + Lx9 LINE L1 7263 7419 -225 1 1264 375 23 0 0 chr4 89067823 89067867 -66562253 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1264 554 0 15 0 chr4 89067867 89067932 -66562188 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1264 653 259 14 7 chr4 89068067 89068215 -66561905 + B1_Mur3 SINE Alu 1 149 0 1 1264 1573 53 26 0 chr4 89068266 89068455 -66561665 - B2_Mm2 SINE B2 0 195 2 1 1264 2651 289 119 19 chr4 89068511 89069525 -66560595 + Lx8 LINE L1 6358 7473 0 1 1264 1499 143 9 18 chr4 89069621 89069848 -66560272 - URR1A DNA MER1_type 0 226 2 1 1264 252 234 0 0 chr4 89069952 89069999 -66560121 - ID4_ SINE ID -34 49 3 1 1264 1087 281 10 46 chr4 89070462 89070486 -66559634 - B4A SINE B4 -1 291 273 1 1264 396 0 0 0 chr4 89070486 89070530 -66559590 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1264 1087 281 10 46 chr4 89070530 89070807 -66559313 - B4A SINE B4 -20 272 1 1 1264 313 286 95 138 chr4 89071239 89071470 -66558650 + MLT1L LTR MaLR 260 480 -130 1 1264 2314 53 0 0 chr4 89071605 89071871 -66558249 + L1Md_T LINE L1 6317 6582 0 1 1264 260 231 13 0 chr4 89072067 89072145 -66557975 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1264 21 36 0 0 chr4 89073132 89073160 -66556960 + AT_rich Low_complexity Low_complexity 1 28 0 1 1264 8539 45 1 1 chr4 89073877 89075600 -66554520 - L1Md_F2 LINE L1 0 6582 4859 1 1264 5353 69 6 0 chr4 89075595 89076280 -66553840 - L1Md_F2 LINE L1 -5437 1179 491 1 1264 201 121 0 0 chr4 89076530 89076563 -66553557 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1264 961 215 0 30 chr4 89076934 89077135 -66552985 + ORR1E LTR MaLR 3 197 -162 1 1264 26896 106 83 26 chr4 89077746 89083262 -66546858 - L1_Mus1 LINE L1 0 6567 725 1 1264 488 244 16 8 chr4 89083270 89083398 -66546722 - L1_Mus1 LINE L1 -5813 803 675 1 1264 309 281 33 35 chr4 89083456 89083646 -66546474 - L1VL1 LINE L1 -6030 392 87 1 1264 207 0 0 0 chr4 89084068 89084091 -66546029 + (TTTCC)n Simple_repeat Simple_repeat 1 23 0 1 1264 1295 67 11 0 chr4 89084091 89084269 -66545851 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1264 696 83 0 0 chr4 89084279 89084375 -66545745 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 1 1264 700 209 256 0 chr4 89084382 89084554 -66545566 - B3 SINE B2 0 216 1 1 1264 303 289 0 0 chr4 89084604 89084680 -66545440 - MIRb SINE MIR -9 259 184 1 1264 629 108 20 0 chr4 89085115 89085217 -66544903 + Lx2B LINE L1 6895 6998 -2 1 1264 7983 30 0 0 chr4 89086681 89087593 -66542527 - L1Md_T LINE L1 0 6582 5671 1 1264 309 155 0 0 chr4 89087949 89088007 -66542113 + (CAA)n Simple_repeat Simple_repeat 2 59 0 1 1264 346 350 60 0 chr4 89088784 89088967 -66541153 - L2b LINE L2 -260 3115 2922 1 1264 807 201 0 7 chr4 89089144 89089289 -66540831 - B1_Mur2 SINE Alu 0 149 6 1 1264 339 232 32 111 chr4 89089181 89089307 -66540813 - MT2B LTR ERVL -338 263 148 1 1264 225 132 0 0 chr4 89089643 89089681 -66540439 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1264 1773 210 75 39 chr4 89089880 89090267 -66539853 - Lx5 LINE L1 -4 7046 6646 1 1264 262 202 9 18 chr4 89090323 89090434 -66539686 + Lx5 LINE L1 6020 6129 -921 1 1264 2918 194 65 5 chr4 89090443 89091038 -66539082 - Lx5 LINE L1 -410 6640 6010 1 1264 755 90 9 0 chr4 89091130 89091241 -66538879 + URR1B DNA MER1_type 83 194 -31 1 1264 533 280 169 28 chr4 89091299 89091590 -66538530 - L1M4 LINE L1 -392 5786 5482 1 1264 243 0 0 0 chr4 89091590 89091617 -66538503 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1 1264 533 248 75 66 chr4 89091617 89091785 -66538335 - L1M4 LINE L1 -697 5481 5270 1 1264 740 83 9 0 chr4 89092320 89092429 -66537691 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 1 1264 516 116 0 0 chr4 89092429 89092514 -66537606 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1264 558 0 0 0 chr4 89092514 89092575 -66537545 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1264 450 0 0 0 chr4 89094436 89094486 -66535634 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1264 23 0 0 0 chr4 89095872 89095895 -66534225 + AT_rich Low_complexity Low_complexity 1 23 0 1 1264 528 296 58 36 chr4 89095998 89096289 -66533831 + ORR1E LTR MaLR 1 400 -19 1 1264 377 345 18 35 chr4 89096680 89096851 -66533269 - MLT1G1 LTR MaLR -2 577 410 1 1264 316 374 43 27 chr4 89096945 89097129 -66532991 - MLT1G1 LTR MaLR -337 258 72 1 1264 193 315 21 21 chr4 89097539 89097633 -66532487 - MIR SINE MIR -77 185 92 1 1264 445 259 27 0 chr4 89097685 89097797 -66532323 - L1MA4A LINE L1 -371 5932 5818 1 1264 22 0 0 0 chr4 89098883 89098905 -66531215 + AT_rich Low_complexity Low_complexity 1 22 0 1 1264 423 249 73 16 chr4 89099075 89099194 -66530926 - B1_Mus1 SINE Alu -29 120 3 1 1264 290 214 12 0 chr4 89099859 89099943 -66530177 + CT-rich Low_complexity Low_complexity 2 86 0 1 1264 690 197 87 0 chr4 89099943 89100070 -66530050 - B1_Mur1 SINE Alu -1 148 11 1 1264 1114 97 7 0 chr4 89101475 89101619 -66528501 - B1_Mus2 SINE Alu -2 145 1 1 1264 1249 176 66 51 chr4 89102396 89102731 -66527389 + RLTR15 LTR ERVK 1 340 -19 1 1264 335 233 33 0 chr4 89102883 89102973 -66527147 + GA-rich Low_complexity Low_complexity 4 96 0 1 1264 675 221 0 0 chr4 89103094 89103252 -66526868 + (TA)n Simple_repeat Simple_repeat 1 158 0 1 1264 252 0 0 0 chr4 89103259 89103287 -66526833 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1264 3445 232 99 40 chr4 89104072 89105021 -66525099 - RMER1A Other Other -12 1018 83 1 1264 849 234 0 108 chr4 89105538 89105778 -66524342 + B3 SINE B2 1 214 -2 1 1264 438 36 0 0 chr4 89106900 89106956 -66523164 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1264 287 304 52 45 chr4 89107762 89107917 -66522203 + Charlie16a DNA MER1_type 70 225 -117 1 1264 845 208 28 7 chr4 89108376 89108521 -66521599 - B1_Mur1 SINE Alu 0 149 2 1 1264 628 159 196 0 chr4 89108570 89108708 -66521412 - Lx5 LINE L1 -1 7049 6885 1 1264 787 165 1 11 chr4 89108703 89108856 -66521264 - Lx5 LINE L1 -766 6292 6146 1 1264 1348 105 21 16 chr4 89109185 89109378 -66520742 - B2_Mm2 SINE B2 -1 194 1 1 1264 2818 86 141 137 chr4 89109614 89110124 -66519996 + RLTR1B LTR ERV1 1 512 0 1 1264 200 188 19 38 chr4 89112461 89112566 -66517554 + (CAGAGA)n Simple_repeat Simple_repeat 3 105 0 1 1264 390 252 110 14 chr4 89113304 89113449 -66516671 + MIR SINE MIR 85 243 -19 1 1264 332 234 108 39 chr4 89114187 89114316 -66515804 + MIRb SINE MIR 61 198 -70 1 1264 227 238 59 70 chr4 89114644 89114790 -66515330 - MIRm SINE MIR -30 178 47 1 1264 25 0 0 0 chr4 89114810 89114835 -66515285 + AT_rich Low_complexity Low_complexity 1 25 0 1 1264 254 282 67 25 chr4 89114983 89115103 -66515017 - MIR SINE MIR -27 235 111 1 1264 683 270 67 0 chr4 89115205 89115383 -66514737 - Lx9 LINE L1 -794 6850 6661 1 1264 1059 314 61 39 chr4 89115443 89116157 -66513963 - Lx9 LINE L1 -973 6671 5817 1 1264 1333 104 44 0 chr4 89116225 89116407 -66513713 + B2_Mm1t SINE B2 2 191 -2 1 1264 1499 235 123 47 chr4 89116615 89117186 -66512934 - L1_Mur3 LINE L1 -1604 4276 3663 1 1264 21 0 0 0 chr4 89118468 89118489 -66511631 + AT_rich Low_complexity Low_complexity 1 21 0 1 1264 361 295 90 41 chr4 89118639 89118784 -66511336 + MARNA DNA Mariner 11 162 -424 1 1264 628 298 106 4 chr4 89118972 89119228 -66510892 - B4A SINE B4 -9 283 2 1 1264 788 199 14 7 chr4 89119309 89119456 -66510664 - B1_Mus1 SINE Alu 0 148 1 1 1264 949 194 140 17 chr4 89119757 89119990 -66510130 - MTD LTR MaLR -3 416 155 1 1264 2223 187 95 14 chr4 89119990 89120473 -66509647 - RLTR11A LTR ERVK 0 528 7 1 1264 421 153 271 39 chr4 89120471 89120600 -66509520 - MTD LTR MaLR -260 159 1 1 1264 2258 248 82 55 chr4 89120600 89121689 -66508431 - MTD-int LTR MaLR 0 1098 1 1 1264 1224 186 167 7 chr4 89121692 89121968 -66508152 + MTD LTR MaLR 1 320 -99 1 1264 606 252 24 0 chr4 89122237 89122364 -66507756 + RSINE1 SINE B4 3 132 -33 1 1264 378 0 0 0 chr4 89122368 89122410 -66507710 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1264 411 162 14 0 chr4 89122420 89122494 -66507626 + MTD LTR MaLR 345 419 0 1 1264 224 337 47 0 chr4 89122558 89122644 -66507476 + PB1D7 SINE Alu 13 102 -18 1 1264 207 271 0 0 chr4 89122651 89122699 -66507421 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1264 4950 196 53 43 chr4 89123176 89123386 -66506734 - Lx9 LINE L1 -2 7642 7458 1 1264 447 100 0 0 chr4 89123386 89123456 -66506664 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1264 4950 196 53 43 chr4 89123456 89124427 -66505693 - Lx9 LINE L1 -187 7457 6449 1 1264 26 0 0 0 chr4 89125689 89125715 -66504405 + AT_rich Low_complexity Low_complexity 1 26 0 1 1264 198 294 128 35 chr4 89127072 89127213 -66502907 - MIRb SINE MIR -23 245 92 1 1264 335 194 0 31 chr4 89127219 89127283 -66502837 + Lx9 LINE L1 7170 7231 -413 1 1264 848 139 0 11 chr4 89127283 89127465 -66502655 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1264 39 0 0 0 chr4 89127532 89127571 -66502549 + AT_rich Low_complexity Low_complexity 1 39 0 1 1264 506 277 0 97 chr4 89128161 89128337 -66501783 + B3A SINE B2 24 182 -16 1 1265 325 241 23 81 chr4 89129342 89129428 -66500692 + ID4_ SINE ID 2 82 -1 1 1265 2443 162 91 101 chr4 89132627 89133223 -66496897 - RMER19B LTR ERVK -312 590 1 1 1265 782 305 93 73 chr4 89133902 89134351 -66495769 + MLT1C LTR MaLR 4 461 -6 1 1265 41 0 0 0 chr4 89134442 89134483 -66495637 + AT_rich Low_complexity Low_complexity 1 41 0 1 1265 316 287 11 0 chr4 89134646 89134740 -66495380 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1265 554 326 35 0 chr4 89134903 89135044 -66495076 + RSINE1 SINE B4 9 154 -11 1 1265 405 0 0 0 chr4 89135131 89135176 -66494944 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1265 189 121 0 0 chr4 89135194 89135227 -66494893 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1265 1244 57 0 0 chr4 89135230 89135371 -66494749 - B1_Mus2 SINE Alu -6 141 1 1 1265 232 61 39 39 chr4 89135857 89135908 -66494212 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 2 1265 909 104 0 0 chr4 89135908 89136146 -66493974 + (CA)n Simple_repeat Simple_repeat 1 238 0 2 1265 284 188 36 48 chr4 89137628 89137712 -66492408 + MER58C DNA MER1_type 123 205 -10 2 1265 202 234 0 0 chr4 89137983 89138030 -66492090 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1265 414 0 0 0 chr4 89138137 89138183 -66491937 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1265 1103 297 266 15 chr4 89138183 89138703 -66491417 - Lx8 LINE L1 -146 7327 6677 2 1265 708 210 55 4 chr4 89139096 89139235 -66490885 + B1_Mur1 SINE Alu 2 143 -6 2 1265 904 284 58 49 chr4 89139360 89139704 -66490416 + ORR1E LTR MaLR 13 359 0 2 1265 2832 320 90 41 chr4 89139728 89140026 -66490094 + MTE-int LTR MaLR 54 346 -1234 2 1265 980 117 141 6 chr4 89140026 89140189 -66489931 + B2_Mm2 SINE B2 2 186 -9 2 1265 2832 320 90 41 chr4 89140189 89141066 -66489054 + MTE-int LTR MaLR 347 1287 -293 2 1265 1197 75 0 0 chr4 89141068 89141229 -66488891 + (TTCTC)n Simple_repeat Simple_repeat 5 165 0 2 1265 822 48 0 0 chr4 89141229 89141332 -66488788 + (TCCCC)n Simple_repeat Simple_repeat 4 106 0 2 1265 269 118 20 0 chr4 89141332 89141383 -66488737 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1265 416 222 9 0 chr4 89141383 89141491 -66488629 - L1_Rod LINE L1 -1526 4321 4213 2 1265 294 336 26 34 chr4 89141754 89141871 -66488249 + MTEa LTR MaLR 254 369 -10 2 1265 1202 285 51 36 chr4 89141880 89142291 -66487829 + ERVL-B4-int LTR ERVL 2482 2898 -2816 2 1265 29 0 0 0 chr4 89142291 89142320 -66487800 + AT_rich Low_complexity Low_complexity 1 29 0 2 1265 1939 284 39 5 chr4 89142425 89143036 -66487084 + L1MC3 LINE L1 7036 7667 -118 2 1265 378 0 0 0 chr4 89143339 89143381 -66486739 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1265 443 289 42 7 chr4 89143491 89143634 -66486486 + B1F1 SINE Alu 2 149 0 2 1265 329 276 53 0 chr4 89143648 89143724 -66486396 + ID4_ SINE ID 4 83 0 2 1265 1917 146 108 0 chr4 89144207 89144502 -66485618 + ORR1A2 LTR MaLR 1 327 0 2 1265 788 307 26 11 chr4 89144674 89145023 -66485097 + L1MA4 LINE L1 5315 5668 -635 2 1265 348 255 65 36 chr4 89145084 89145291 -66484829 + L1MA4 LINE L1 5794 5998 -170 2 1265 375 371 101 47 chr4 89145769 89146196 -66483924 + LTR16E1 LTR ERVL 10 459 -79 2 1265 279 79 0 0 chr4 89146532 89146570 -66483550 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2 1265 250 231 220 8 chr4 89147051 89147169 -66482951 - L1MEf LINE L1 -4605 1595 1453 2 1265 5774 166 14 13 chr4 89147231 89148179 -66481941 - Lx2B LINE L1 -4 6996 6048 2 1265 472 280 65 20 chr4 89148322 89148475 -66481645 - Lx8 LINE L1 -82 7391 7232 2 1265 1431 298 71 71 chr4 89148713 89149415 -66480705 - Lx8 LINE L1 -23 7450 6749 2 1265 2544 104 8 72 chr4 89149419 89149821 -66480299 + Lx3B LINE L1 6593 6968 -5 2 1265 2280 151 49 11 chr4 89149866 89150235 -66479885 - Lx2A1 LINE L1 -8 7000 6618 2 1265 3074 121 34 4 chr4 89150237 89150712 -66479408 + Lx2B LINE L1 6128 6616 -384 2 1265 697 274 5 11 chr4 89150887 89151075 -66479045 + L3b LINE CR1 204 390 -92 2 1265 327 78 0 0 chr4 89151742 89151793 -66478327 + (A)n Simple_repeat Simple_repeat 1 51 0 2 1265 207 333 25 85 chr4 89152170 89152288 -66477832 - MIRb SINE MIR -149 119 9 2 1265 306 260 13 13 chr4 89154160 89154238 -66475882 + B4 SINE B4 1 78 -214 2 1265 814 181 18 24 chr4 89154344 89154508 -66475612 + MTD LTR MaLR 255 417 -2 2 1265 193 359 47 53 chr4 89154548 89154698 -66475422 + MIRb SINE MIR 5 153 -115 2 1265 984 48 0 0 chr4 89154927 89155053 -66475067 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 1265 314 321 18 28 chr4 89156538 89156647 -66473473 - PB1D7 SINE Alu -2 118 11 2 1265 2807 146 67 52 chr4 89156764 89157298 -66472822 + RMER15 LTR ERVL 13 554 -21 2 1265 22 0 0 0 chr4 89157404 89157426 -66472694 + AT_rich Low_complexity Low_complexity 1 22 0 2 1265 846 241 108 0 chr4 89157959 89158154 -66471966 + B3 SINE B2 1 216 0 2 1265 27019 105 16 14 chr4 89158370 89160255 -66469865 - L1_Mus4 LINE L1 -6 6630 4734 2 1265 243 0 0 0 chr4 89160255 89160282 -66469838 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1265 27019 148 18 8 chr4 89160282 89164401 -66465719 - L1_Mus4 LINE L1 -1150 4733 575 2 1265 7797 105 58 21 chr4 89164447 89165613 -66464507 - Lx3B LINE L1 -2 6971 5763 2 1265 23 68 0 0 chr4 89166164 89166208 -66463912 + AT_rich Low_complexity Low_complexity 1 44 0 2 1265 393 22 0 0 chr4 89166227 89166273 -66463847 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1265 236 295 141 94 chr4 89166584 89166797 -66463323 - MLT1E1A LTR MaLR -300 380 158 2 1265 709 209 143 0 chr4 89166653 89166863 -66463257 - MLT2C2 LTR ERVL -219 245 6 2 1265 236 196 0 0 chr4 89166951 89167002 -66463118 + T-rich Low_complexity Low_complexity 1 51 0 2 1265 234 0 0 0 chr4 89167406 89167432 -66462688 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1265 498 206 165 8 chr4 89167465 89167592 -66462528 + B1_Mm SINE Alu 1 147 0 2 1265 360 204 17 69 chr4 89168166 89168282 -66461838 - Lx2B LINE L1 -1 6999 6890 2 1265 1151 194 179 21 chr4 89168290 89168737 -66461383 + Lx9 LINE L1 6350 6953 -691 2 1265 1063 250 125 26 chr4 89168792 89169137 -66460983 - MTE2a LTR MaLR 0 379 1 2 1265 243 0 0 0 chr4 89170021 89170048 -66460072 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1265 423 0 0 0 chr4 89170048 89170094 -66460026 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1265 911 182 192 6 chr4 89170174 89170356 -66459764 + B3 SINE B2 1 216 0 2 1265 799 266 5 0 chr4 89170793 89170985 -66459135 - B3 SINE B2 -6 210 18 2 1265 308 291 79 17 chr4 89171625 89171803 -66458317 - L1MC4a LINE L1 -1830 6052 5864 2 1265 283 247 67 27 chr4 89173262 89173337 -66456783 - ID4_ SINE ID -3 80 3 2 1265 452 250 44 53 chr4 89173361 89173475 -66456645 - B1F SINE Alu 0 149 37 2 1265 320 324 66 47 chr4 89173503 89173821 -66456299 - Charlie4a DNA MER1_type -184 324 1 2 1265 21 57 0 0 chr4 89174593 89174628 -66455492 + AT_rich Low_complexity Low_complexity 1 35 0 2 1265 204 175 31 16 chr4 89174730 89174794 -66455326 + CT-rich Low_complexity Low_complexity 1 65 0 2 1265 28 0 0 0 chr4 89174794 89174822 -66455298 + AT_rich Low_complexity Low_complexity 1 28 0 2 1265 1235 161 101 72 chr4 89175833 89175969 -66454151 - Lx9 LINE L1 -1 7643 7485 2 1265 369 0 0 0 chr4 89175969 89176010 -66454110 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1265 1235 161 101 72 chr4 89176010 89176180 -66453940 - Lx9 LINE L1 -160 7484 7329 2 1265 229 68 22 22 chr4 89177140 89177185 -66452935 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 2 1265 28 0 0 0 chr4 89177607 89177635 -66452485 + AT_rich Low_complexity Low_complexity 1 28 0 2 1265 4396 124 33 26 chr4 89177651 89178345 -66451775 - Lx3B LINE L1 -10 6963 6265 2 1265 3886 108 21 6 chr4 89178346 89178913 -66451207 - Lx3B LINE L1 -837 6136 5587 2 1265 2541 69 0 0 chr4 89179177 89179481 -66450639 + L1_Mus1 LINE L1 6264 6567 0 2 1265 668 98 10 0 chr4 89179590 89179692 -66450428 + (GAAA)n Simple_repeat Simple_repeat 1 103 0 2 1265 27 0 0 0 chr4 89179747 89179774 -66450346 + AT_rich Low_complexity Low_complexity 1 27 0 2 1265 980 248 70 23 chr4 89179958 89180259 -66449861 - Lx9 LINE L1 0 7644 7330 2 1265 996 244 167 60 chr4 89181100 89181466 -66448654 - MTD LTR MaLR -14 405 1 2 1265 254 265 66 41 chr4 89182745 89182867 -66447253 - MLT1I LTR MaLR -5 406 282 2 1265 201 258 0 0 chr4 89183024 89183090 -66447030 + CT-rich Low_complexity Low_complexity 4 69 0 2 1265 4842 36 4 5 chr4 89183512 89184065 -66446055 + L1Md_F2 LINE L1 6017 6568 -14 2 1265 523 204 111 58 chr4 89185059 89185110 -66445010 + Lx9 LINE L1 7425 7479 -165 2 1265 297 0 0 0 chr4 89185110 89185143 -66444977 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1265 523 204 111 58 chr4 89185143 89185299 -66444821 + Lx9 LINE L1 7480 7643 -1 2 1265 190 300 71 0 chr4 89186309 89186379 -66443741 - L3 LINE CR1 -3516 973 899 2 1265 876 111 0 0 chr4 89186935 89187070 -66443050 + (TCCCC)n Simple_repeat Simple_repeat 3 137 0 2 1265 265 278 0 89 chr4 89187104 89187183 -66442937 - ID4 SINE ID -10 73 2 2 1265 308 276 19 58 chr4 89187183 89187287 -66442833 - PB1D10 SINE Alu -2 115 16 2 1265 414 0 0 0 chr4 89187857 89187903 -66442217 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1265 432 0 0 0 chr4 89188157 89188205 -66441915 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1265 517 247 167 116 chr4 89189281 89189556 -66440564 + B4 SINE B4 3 291 -1 2 1265 249 33 0 0 chr4 89189584 89189614 -66440506 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1265 189 338 0 0 chr4 89189772 89189840 -66440280 + MIR SINE MIR 149 216 -46 2 1265 798 243 36 16 chr4 89190703 89190895 -66439225 - B3A SINE B2 -2 196 1 2 1265 22 0 0 0 chr4 89191239 89191261 -66438859 + AT_rich Low_complexity Low_complexity 1 22 0 2 1265 1464 44 47 47 chr4 89192198 89192390 -66437730 - B2_Mm1a SINE B2 0 193 2 2 1265 1593 294 42 24 chr4 89192587 89193086 -66437034 - Lx5 LINE L1 -7 7043 6536 2 1265 554 160 183 8 chr4 89194513 89194633 -66435487 + B1_Mus1 SINE Alu 1 141 -7 2 1265 337 275 99 29 chr4 89195229 89195401 -66434719 + Charlie20a DNA Charlie 119 302 -505 2 1265 440 233 0 0 chr4 89197375 89197465 -66432655 - 5S rRNA rRNA -31 90 1 2 1265 273 346 30 8 chr4 89198660 89198794 -66431326 - MIR SINE MIR -16 246 110 2 1265 507 17 0 0 chr4 89199604 89199664 -66430456 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1265 189 0 0 0 chr4 89199761 89199782 -66430338 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1265 1597 289 89 47 chr4 89199980 89200982 -66429138 - L1MA6 LINE L1 -61 6239 5131 3 1265 180 365 10 0 chr4 89200988 89201092 -66429028 + MIRb SINE MIR 72 176 -92 3 1265 254 204 0 0 chr4 89201183 89201237 -66428883 - L1MA5 LINE L1 -59 6241 6188 3 1265 1474 131 0 31 chr4 89201240 89201469 -66428651 - Lx2 LINE L1 -1 6996 6775 3 1265 5326 112 58 1 chr4 89201469 89202302 -66427818 - Lx2 LINE L1 -354 6643 5764 3 1265 339 143 0 0 chr4 89202302 89202358 -66427762 - Lx2 LINE L1 -6 6991 6936 3 1265 1366 174 4 0 chr4 89202373 89202614 -66427506 - L1_Mm LINE L1 -453 5430 5189 3 1265 3753 162 22 1 chr4 89202614 89203238 -66426882 - Lx2 LINE L1 -114 5769 5141 3 1265 952 206 32 50 chr4 89203238 89203458 -66426662 - B3 SINE B2 0 216 1 3 1265 1049 304 69 121 chr4 89203458 89204219 -66425901 - Lx2 LINE L1 -998 5145 4463 3 1265 793 281 73 18 chr4 89204219 89204491 -66425629 - B4 SINE B4 -2 290 4 3 1265 1049 304 69 121 chr4 89204491 89204889 -66425231 - Lx2 LINE L1 -1681 4462 4072 3 1265 1317 112 15 15 chr4 89205316 89205516 -66424604 - L1_Mus3 LINE L1 -1 6637 6438 3 1265 294 305 104 0 chr4 89205870 89206018 -66424102 + MIR SINE MIR 57 221 -41 3 1265 711 276 146 14 chr4 89206178 89206472 -66423648 + Lx8 LINE L1 7137 7469 -4 3 1265 32822 31 0 0 chr4 89206890 89211477 -66418643 - L1Md_T LINE L1 0 6582 2024 3 1265 266 227 0 13 chr4 89211494 89211570 -66418550 + CT-rich Low_complexity Low_complexity 2 76 0 3 1265 1434 57 0 0 chr4 89212421 89212691 -66417429 + (TTCC)n Simple_repeat Simple_repeat 1 270 0 3 1265 1245 210 194 3 chr4 89212692 89213034 -66417086 + MTD LTR MaLR 13 405 -14 3 1265 227 250 15 0 chr4 89213197 89213265 -66416855 - Lx9 LINE L1 -15 7629 7561 3 1265 265 178 40 40 chr4 89213284 89213360 -66416760 - Lx9 LINE L1 -52 7592 7517 3 1265 549 0 0 0 chr4 89213360 89213421 -66416699 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1265 471 82 0 0 chr4 89213422 89213495 -66416625 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 3 1265 238 235 86 67 chr4 89214755 89214860 -66415260 - RMER17B LTR ERVK -763 195 89 3 1265 216 0 0 0 chr4 89217872 89217896 -66412224 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1265 2040 110 7 17 chr4 89217952 89218248 -66411872 + Lx2B LINE L1 6708 7000 0 3 1265 1165 37 0 14 chr4 89218578 89218716 -66411404 + B1_Mus2 SINE Alu 2 137 -10 3 1265 352 0 0 40 chr4 89218716 89218766 -66411354 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1265 384 22 0 0 chr4 89219042 89219087 -66411033 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1265 301 237 69 40 chr4 89221830 89221931 -66408189 - MLT1A1 LTR MaLR 0 408 305 3 1265 293 308 52 52 chr4 89221982 89222136 -66407984 - MLT1A1 LTR MaLR -215 159 6 3 1265 321 26 0 0 chr4 89222143 89222181 -66407939 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1265 520 40 0 26 chr4 89222182 89222259 -66407861 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1265 273 118 0 0 chr4 89222280 89222331 -66407789 + (TCTCTG)n Simple_repeat Simple_repeat 6 56 0 3 1265 1820 296 131 19 chr4 89223168 89224085 -66406035 - Lx8 LINE L1 -365 7108 6089 3 1265 7057 72 6 3 chr4 89224275 89225249 -66404871 + L1_Mus1 LINE L1 5591 6567 0 3 1265 292 231 10 44 chr4 89225298 89225429 -66404691 - Lx8 LINE L1 -1640 5833 5675 3 1265 201 108 0 0 chr4 89225451 89225488 -66404632 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1265 868 233 62 11 chr4 89225488 89225666 -66404454 - B3 SINE B2 -29 187 1 3 1265 681 251 33 19 chr4 89225681 89225892 -66404228 - B3 SINE B2 -1 215 2 3 1265 491 297 70 27 chr4 89226002 89226189 -66403931 - RMER30 DNA MER1_type -1 201 7 3 1265 295 284 14 0 chr4 89226670 89226744 -66403376 + ORR1E LTR MaLR 1 75 -284 3 1265 332 320 72 38 chr4 89226764 89227027 -66403093 - RLTR15 LTR ERVK -14 345 74 3 1265 347 221 20 40 chr4 89227022 89227121 -66402999 - RLTR15 LTR ERVK -229 130 34 3 1265 669 234 54 129 chr4 89227138 89227433 -66402687 + ORR1E LTR MaLR 85 357 -2 3 1265 992 272 90 54 chr4 89227427 89227815 -66402305 + ORR1E-int LTR MaLR 3 404 -1176 3 1265 274 347 13 53 chr4 89227883 89228035 -66402085 + ORR1E-int LTR MaLR 392 537 -1043 3 1265 384 214 0 0 chr4 89228333 89228445 -66401675 + CT-rich Low_complexity Low_complexity 1 112 0 3 1265 555 16 0 0 chr4 89228640 89228704 -66401416 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 3 1265 1509 291 44 8 chr4 89228764 89229350 -66400770 - Lx8 LINE L1 -121 7352 6746 3 1265 459 0 0 0 chr4 89229556 89229607 -66400513 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1265 202 182 0 0 chr4 89229607 89229640 -66400480 + polypyrimidine Low_complexity Low_complexity 3 35 0 3 1265 210 71 0 0 chr4 89229872 89229900 -66400220 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1265 586 308 147 33 chr4 89229905 89230150 -66399970 - B4A SINE B4 -19 273 1 3 1265 279 0 0 0 chr4 89230463 89230494 -66399626 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1265 201 147 0 0 chr4 89231296 89231330 -66398790 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 3 1265 1013 145 0 6 chr4 89231330 89231510 -66398610 + GA-rich Low_complexity Low_complexity 1 179 0 3 1265 1003 281 47 48 chr4 89232127 89232579 -66397541 - MLT2B2 LTR ERVL -8 554 3 3 1265 2239 162 0 13 chr4 89232940 89233316 -66396804 - RLTR14 LTR ERV1 0 382 12 3 1265 614 49 12 0 chr4 89235445 89235527 -66394593 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 3 1265 1820 213 17 25 chr4 89236199 89236604 -66393516 + Lx6 LINE L1 7059 7460 0 3 1265 336 48 0 0 chr4 89237102 89237144 -66392976 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 3 1265 712 318 41 28 chr4 89237569 89237713 -66392407 - L1MB2 LINE L1 -9 6162 6015 3 1265 230 292 14 0 chr4 89237713 89237785 -66392335 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 3 1265 712 321 50 30 chr4 89237785 89238103 -66392017 - L1MB2 LINE L1 -175 6014 5679 3 1265 180 77 0 0 chr4 89238340 89238366 -66391754 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1265 6023 122 37 8 chr4 89238368 89239317 -66390803 - Lx3B LINE L1 -4 6969 5994 3 1265 801 0 30 37 chr4 89239391 89239525 -66390595 + (TTCTC)n Simple_repeat Simple_repeat 5 137 0 3 1265 250 278 181 8 chr4 89240226 89240353 -66389767 - MIR SINE MIR -7 255 107 3 1265 3775 50 0 28 chr4 89240628 89241122 -66388998 - L1Md_F2 LINE L1 0 6582 6103 3 1265 930 114 0 0 chr4 89241459 89241698 -66388422 + (CA)n Simple_repeat Simple_repeat 1 239 0 3 1265 432 0 0 0 chr4 89241698 89241745 -66388375 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1265 213 236 55 0 chr4 89242266 89242321 -66387799 + B4 SINE B4 2 59 -233 3 1265 1934 68 0 4 chr4 89242491 89242756 -66387364 + L1_Mur1 LINE L1 5293 5556 -330 3 1265 269 369 40 90 chr4 89243030 89243253 -66386867 - MamRep605 Unknown Unknown -323 553 342 3 1265 288 304 0 0 chr4 89244041 89244110 -66386010 + RMER15 LTR ERVL 403 471 -104 3 1265 188 341 100 14 chr4 89244200 89244340 -66385780 + L2 LINE L2 2433 2584 -835 3 1265 210 359 43 0 chr4 89244432 89244549 -66385571 + L2 LINE L2 2602 2723 -696 3 1265 21 0 0 0 chr4 89244738 89244759 -66385361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1265 1084 110 0 0 chr4 89245172 89245318 -66384802 - B1_Mus2 SINE Alu 0 147 2 3 1265 368 299 50 28 chr4 89245318 89245497 -66384623 - L1M2 LINE L1 -507 5784 5602 3 1265 3333 153 33 8 chr4 89245524 89246420 -66383700 - Lx4B LINE L1 -766 6292 5355 3 1265 2490 212 72 18 chr4 89246429 89247095 -66383025 + Lx2B LINE L1 6296 6997 -3 3 1265 3321 217 58 22 chr4 89247116 89247948 -66382172 - Lx9 LINE L1 -687 6957 6096 3 1265 321 311 8 8 chr4 89248000 89248120 -66382000 - L1M2 LINE L1 -928 5215 5096 3 1265 500 295 46 13 chr4 89248152 89248303 -66381817 + RSINE1 SINE B4 3 158 -7 3 1265 35 0 0 0 chr4 89248523 89248558 -66381562 + AT_rich Low_complexity Low_complexity 1 35 0 3 1265 1041 126 0 0 chr4 89248624 89248799 -66381321 + (TC)n Simple_repeat Simple_repeat 2 176 0 3 1265 2487 285 60 51 chr4 89248822 89249379 -66380741 - L1M2 LINE L1 -869 5274 4685 3 1265 513 47 0 0 chr4 89249379 89249443 -66380677 + (TATG)n Simple_repeat Simple_repeat 1 64 0 3 1265 639 40 30 0 chr4 89249444 89249543 -66380577 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 3 1265 2487 285 60 51 chr4 89249543 89250556 -66379564 - L1M2 LINE L1 -1459 4684 3688 3 1265 974 120 0 22 chr4 89250564 89250743 -66379377 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 3 1265 600 256 15 15 chr4 89250743 89250945 -66379175 - L1M2 LINE L1 -2451 3692 3491 3 1265 379 350 87 68 chr4 89251512 89251776 -66378344 - B4 SINE B4 -12 280 12 3 1265 365 186 98 68 chr4 89252117 89252250 -66377870 + Lx9 LINE L1 7502 7638 -6 3 1265 891 280 29 29 chr4 89252646 89253061 -66377059 - L1MC4 LINE L1 -4469 1746 1332 3 1265 327 310 55 45 chr4 89253068 89253288 -66376832 - L1MC2 LINE L1 -10 6334 6113 3 1265 634 288 31 25 chr4 89253520 89253716 -66376404 + ORR1E LTR MaLR 1 197 -162 3 1265 397 257 195 77 chr4 89253722 89254174 -66375946 - L1MC4 LINE L1 -5051 1164 660 3 1265 30 27 0 0 chr4 89254268 89254305 -66375815 + AT_rich Low_complexity Low_complexity 1 37 0 3 1265 449 138 22 33 chr4 89254487 89254577 -66375543 + Lx7 LINE L1 5595 5683 -2013 3 1265 483 82 0 0 chr4 89255617 89255690 -66374430 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1265 955 70 7 7 chr4 89256109 89256252 -66373868 - L1_Mm LINE L1 -1067 4816 4674 3 1265 678 275 119 1 chr4 89256247 89256497 -66373623 - Lx6 LINE L1 -575 6885 6483 3 1265 602 343 53 28 chr4 89257400 89257682 -66372438 + MLT1B LTR MaLR 53 341 -49 3 1265 441 282 15 77 chr4 89258092 89258288 -66371832 + MLT2C1 LTR ERVL 5 188 -209 3 1265 462 282 72 5 chr4 89258483 89258690 -66371430 + ERVL-B4-int LTR ERVL 27 247 -5467 3 1265 594 242 60 38 chr4 89258723 89258989 -66371131 + Lx9 LINE L1 5794 6065 -1579 3 158 4952 208 41 35 chr4 89259000 89260194 -66369926 + Lx9 LINE L1 6438 7638 -6 3 1266 285 153 42 0 chr4 89260619 89260691 -66369429 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 3 1266 397 175 51 25 chr4 89261068 89261226 -66368894 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 3 1266 538 231 39 138 chr4 89261813 89261994 -66368126 + B3A SINE B2 20 182 -16 3 1266 608 212 115 5 chr4 89262408 89262616 -66367504 - Lx9 LINE L1 -1 7643 7413 3 1266 1139 117 0 6 chr4 89262926 89263107 -66367013 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1266 669 165 0 0 chr4 89263107 89263228 -66366892 + CT-rich Low_complexity Low_complexity 1 121 0 3 1266 2731 72 41 5 chr4 89263228 89263621 -66366499 - L1Md_F2 LINE L1 -28 6554 6148 4 1266 25432 78 10 10 chr4 89263619 89266407 -66363713 - L1Md_F LINE L1 -869 5014 2215 4 1266 5379 56 6 0 chr4 89266407 89267087 -66363033 - L1Md_F2 LINE L1 0 6582 5899 4 1266 25432 111 32 6 chr4 89267087 89269069 -66361051 - L1Md_F LINE L1 -3669 2214 189 4 1266 22 35 0 0 chr4 89269628 89269657 -66360463 + AT_rich Low_complexity Low_complexity 1 29 0 4 1266 426 20 0 0 chr4 89269675 89269726 -66360394 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1266 232 301 54 0 chr4 89270726 89270819 -66359301 - MIR3 SINE MIR -6 202 105 4 1266 482 208 55 55 chr4 89271037 89271164 -66358956 - B1F2 SINE Alu -5 144 18 4 1266 21 36 0 0 chr4 89271356 89271384 -66358736 + AT_rich Low_complexity Low_complexity 1 28 0 4 1266 657 314 89 32 chr4 89271384 89271700 -66358420 + ORR1E LTR MaLR 9 342 -17 4 1266 328 255 58 157 chr4 89271738 89271929 -66358191 + MTEa LTR MaLR 208 379 0 4 1266 2512 140 34 7 chr4 89272001 89272417 -66357703 - Lx LINE L1 -2 6652 6226 4 1266 235 213 27 0 chr4 89272898 89272973 -66357147 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1266 473 307 40 0 chr4 89272986 89273087 -66357033 - B3A SINE B2 -30 168 64 4 1266 4666 140 18 21 chr4 89273090 89273888 -66356232 - RMER12 LTR ERVK -527 795 1 4 1266 620 359 33 55 chr4 89274089 89274360 -66355760 + B4A SINE B4 1 265 -27 4 1266 548 111 11 0 chr4 89274403 89274493 -66355627 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1266 3579 77 13 0 chr4 89275544 89276014 -66354106 + Lx3_Mus LINE L1 6534 7009 0 4 1266 585 132 0 0 chr4 89276228 89276349 -66353771 + (CAGA)n Simple_repeat Simple_repeat 2 122 0 4 1266 369 0 0 0 chr4 89276546 89276587 -66353533 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1266 276 111 0 0 chr4 89278244 89278289 -66351831 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1266 36271 31 1 0 chr4 89278590 89285628 -66344492 - L1Md_T LINE L1 0 6585 1 4 1266 22 35 0 0 chr4 89285793 89285822 -66344298 + AT_rich Low_complexity Low_complexity 1 29 0 4 1266 384 205 58 35 chr4 89286546 89286632 -66343488 - PB1D10 SINE Alu -29 88 1 4 1266 189 0 0 0 chr4 89288694 89288715 -66341405 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1266 841 187 0 0 chr4 89289466 89289605 -66340515 - B1_Mur2 SINE Alu -8 141 3 4 1266 360 43 0 0 chr4 89289641 89289687 -66340433 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1266 1056 73 20 0 chr4 89289941 89290092 -66340028 + L1_Mus4 LINE L1 5826 5979 -657 4 1266 2924 101 41 2 chr4 89290092 89290528 -66339592 + L1_Mus4 LINE L1 6184 6636 0 4 1266 226 444 14 43 chr4 89290710 89290849 -66339271 - L2c LINE L2 -179 3208 3074 4 1266 323 316 25 17 chr4 89291025 89291144 -66338976 - MLT1G3 LTR MaLR -311 284 165 4 1266 674 109 10 0 chr4 89291319 89291420 -66338700 - ORR1D2 LTR MaLR 0 370 269 4 1266 1060 94 29 0 chr4 89291494 89291664 -66338456 - L1Md_F3 LINE L1 0 6584 6410 4 1266 29 28 0 0 chr4 89291684 89291720 -66338400 + AT_rich Low_complexity Low_complexity 1 36 0 4 1266 1001 109 52 56 chr4 89291720 89291933 -66338187 - L1_Mus3 LINE L1 -7 6631 6420 4 1266 319 229 83 12 chr4 89291936 89292020 -66338100 - ORR1D2 LTR MaLR -277 93 4 4 1266 6544 91 9 5 chr4 89292339 89293293 -66336827 + L1_Mus4 LINE L1 5673 6630 -6 4 1266 429 20 0 0 chr4 89294781 89294831 -66335289 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1266 222 128 0 0 chr4 89294846 89294885 -66335235 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 4 1266 275 293 84 73 chr4 89295893 89296180 -66333940 + Lx9 LINE L1 7350 7639 -5 4 1266 21 89 0 0 chr4 89296343 89296399 -66333721 + AT_rich Low_complexity Low_complexity 1 56 0 4 1266 376 319 152 66 chr4 89299231 89299533 -66330587 + ORR1D2 LTR MaLR 30 357 -13 4 1266 384 280 99 40 chr4 89300652 89300875 -66329245 + Lx9 LINE L1 5790 6025 -1619 4 1266 3528 89 6 2 chr4 89300961 89301434 -66328686 + MT2C_Mm LTR ERVL 1 475 0 4 1266 1512 297 62 19 chr4 89301540 89301577 -66328543 + Lx9 LINE L1 6362 6398 -1246 4 1266 2192 162 5 50 chr4 89301577 89301973 -66328147 - ORR1C1 LTR MaLR 0 378 1 4 1266 1512 297 62 19 chr4 89301973 89302518 -66327602 + Lx9 LINE L1 6399 6969 -675 4 1266 513 0 0 0 chr4 89302645 89302702 -66327418 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 1266 1220 121 112 0 chr4 89302745 89302968 -66327152 + Lx3C LINE L1 6718 6965 -11 4 1266 727 198 55 46 chr4 89303257 89303278 -66326842 - Lx5 LINE L1 0 7050 7030 4 1266 189 0 0 0 chr4 89303278 89303299 -66326821 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 4 1266 727 198 55 46 chr4 89303299 89303494 -66326626 - Lx5 LINE L1 -21 7029 6832 4 1266 949 235 52 29 chr4 89303785 89304057 -66326063 - Lx7 LINE L1 -383 7313 7036 4 1266 191 346 80 53 chr4 89305818 89305931 -66324189 + L3 LINE CR1 2897 3012 -1477 4 1266 181 316 26 13 chr4 89306009 89306086 -66324034 + MIRc SINE MIR 71 148 -120 4 1266 676 267 39 116 chr4 89306665 89307080 -66323040 - MLT1B LTR MaLR -3 387 5 4 1266 490 340 63 24 chr4 89307432 89307637 -66322483 - MER20 DNA MER1_type 0 219 7 4 1266 220 239 0 0 chr4 89308351 89308397 -66321723 + T-rich Low_complexity Low_complexity 1 46 0 4 1266 616 350 32 21 chr4 89309518 89309798 -66320322 - RMER15 LTR ERVL -36 539 257 4 1266 464 278 183 10 chr4 89310322 89310531 -66319589 + B4 SINE B4 36 280 -12 4 1266 977 39 94 0 chr4 89311808 89311935 -66318185 - B1_Mm SINE Alu -4 143 5 4 1266 399 41 0 0 chr4 89313763 89313812 -66316308 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1266 381 340 112 10 chr4 89314318 89314514 -66315606 + MIRb SINE MIR 17 232 -36 4 1266 333 0 0 0 chr4 89315974 89316011 -66314109 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1266 385 45 61 0 chr4 89316013 89316079 -66314041 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 4 1266 564 15 0 0 chr4 89318785 89318850 -66311270 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1266 396 0 0 0 chr4 89318850 89318893 -66311227 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1266 844 226 13 97 chr4 89319134 89319258 -66310862 + MMAR1 DNA Mariner 22 133 -1153 4 1266 1136 78 0 0 chr4 89319258 89319399 -66310721 - B1_Mus1 SINE Alu -7 141 1 4 1266 844 226 13 97 chr4 89319399 89319573 -66310547 + MMAR1 DNA Mariner 134 295 -991 4 1266 887 266 40 0 chr4 89319888 89320110 -66310010 + MMAR1 DNA Mariner 317 547 -739 4 1266 254 212 247 45 chr4 89320128 89320217 -66309903 + MMAR1 DNA Mariner 603 709 -577 4 1266 207 0 0 0 chr4 89323639 89323662 -66306458 + (TTA)n Simple_repeat Simple_repeat 3 25 0 4 1266 370 184 0 44 chr4 89323827 89323918 -66306202 + L1ME2z LINE L1 5785 5871 -573 4 1266 27 0 0 0 chr4 89324077 89324104 -66306016 + AT_rich Low_complexity Low_complexity 1 27 0 4 1266 473 304 62 12 chr4 89326102 89326262 -66303858 - B4A SINE B4 -16 276 109 4 1266 351 0 0 0 chr4 89326550 89326589 -66303531 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1266 25 31 0 0 chr4 89326631 89326663 -66303457 + AT_rich Low_complexity Low_complexity 1 32 0 4 1266 508 133 62 0 chr4 89327518 89327631 -66302489 - Lx9 LINE L1 -1 7643 7524 4 1266 601 229 109 5 chr4 89327655 89327857 -66302263 - Lx9 LINE L1 -178 7466 7244 4 1266 236 269 24 143 chr4 89329631 89329757 -66300363 + PB1D9 SINE Alu 1 111 -9 4 1266 426 245 108 0 chr4 89329662 89329764 -66300356 + ID_B1 SINE B4 110 222 -2 4 1266 668 293 0 13 chr4 89329778 89329937 -66300183 + RSINE1 SINE B4 9 165 0 4 1266 681 277 58 5 chr4 89331160 89331367 -66298753 + Lx9 LINE L1 6324 6541 -1103 4 1266 566 286 112 0 chr4 89331370 89331664 -66298456 + Lx9 LINE L1 7302 7628 -16 4 1266 6899 130 21 6 chr4 89331918 89333046 -66297074 - Lx2B LINE L1 -129 6871 5727 4 1266 32956 73 3 1 chr4 89333055 89339215 -66290905 - L1Md_F2 LINE L1 -19 6563 392 4 1266 247 362 0 36 chr4 89339262 89339345 -66290775 + ID2 SINE ID 2 81 -2 4 1266 471 224 259 4 chr4 89339359 89339598 -66290522 + Lx9 LINE L1 7129 7427 -217 4 1266 258 203 13 26 chr4 89339760 89339836 -66290284 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1266 32 0 0 0 chr4 89341281 89341313 -66288807 + AT_rich Low_complexity Low_complexity 1 32 0 4 1266 758 266 85 0 chr4 89341423 89341622 -66288498 - B3 SINE B2 0 216 1 4 1266 183 42 0 0 chr4 89341709 89341733 -66288387 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1266 3280 254 80 27 chr4 89341825 89342960 -66287160 + Lx9 LINE L1 6156 7350 -294 4 1266 1377 213 40 46 chr4 89342949 89343299 -66286821 - L1_Rod LINE L1 -106 5741 5394 4 1266 244 227 12 96 chr4 89343580 89343663 -66286457 - MLT1A1 LTR MaLR -321 87 12 4 1266 204 312 0 0 chr4 89344156 89344220 -66285900 - MIR3 SINE MIR -7 201 138 4 1266 25 51 0 0 chr4 89345163 89345202 -66284918 + AT_rich Low_complexity Low_complexity 1 39 0 4 1266 753 228 25 30 chr4 89346452 89346651 -66283469 - B3A SINE B2 0 198 1 4 1266 225 65 0 0 chr4 89346894 89346925 -66283195 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 1266 1353 198 6 48 chr4 89348071 89348405 -66281715 + Lx2B LINE L1 6681 7000 0 4 1266 464 119 36 0 chr4 89349030 89349114 -66281006 + CT-rich Low_complexity Low_complexity 2 88 0 4 1266 311 235 14 90 chr4 89349410 89349555 -66280565 - Lx4B LINE L1 0 7058 6925 4 1266 29 0 0 0 chr4 89349638 89349667 -66280453 + AT_rich Low_complexity Low_complexity 1 29 0 4 1266 189 0 0 0 chr4 89349667 89349688 -66280432 + (TTTAA)n Simple_repeat Simple_repeat 2 22 0 4 1266 482 329 64 49 chr4 89349695 89350428 -66279692 - L1M4 LINE L1 -1359 4787 4044 4 1266 2192 71 86 30 chr4 89350753 89351089 -66279031 + IAPEY2_LTR LTR ERVK 1 355 -2 4 1266 528 16 0 0 chr4 89352406 89352467 -66277653 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 4 1266 6245 177 51 25 chr4 89352604 89352620 -66277500 - Lx5 LINE L1 -128 6922 6906 4 1266 198 0 0 0 chr4 89352620 89352642 -66277478 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 4 1266 6245 177 51 25 chr4 89352642 89352655 -66277465 - Lx5 LINE L1 -145 6905 6900 4 1266 441 0 0 0 chr4 89352655 89352704 -66277416 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 1266 6245 161 54 21 chr4 89352704 89354325 -66275795 - Lx5 LINE L1 -151 6899 5220 4 1266 1388 150 12 0 chr4 89354324 89354577 -66275543 + Lx5 LINE L1 4984 5239 -638 4 1266 414 0 0 0 chr4 89357940 89357986 -66272134 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1266 387 0 0 0 chr4 89357986 89358028 -66272092 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1266 450 0 0 0 chr4 89359010 89359060 -66271060 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1266 646 213 79 0 chr4 89360936 89361063 -66269057 + B1_Mur4 SINE Alu 3 139 -11 5 1266 231 61 0 0 chr4 89361063 89361096 -66269024 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1266 23 54 0 0 chr4 89361115 89361152 -66268968 + AT_rich Low_complexity Low_complexity 1 37 0 5 1266 191 315 0 0 chr4 89361475 89361529 -66268591 - MIRm SINE MIR -18 258 205 5 1266 307 227 111 56 chr4 89362290 89362416 -66267704 + MIRb SINE MIR 94 226 -42 5 1266 233 316 83 65 chr4 89362731 89362900 -66267220 - LTR33C LTR ERVL -3 626 455 5 1266 527 333 62 9 chr4 89363471 89363698 -66266422 + Tigger5 DNA MER2_type 31 269 -2137 5 1266 683 88 9 0 chr4 89363800 89363913 -66266207 + (CA)n Simple_repeat Simple_repeat 2 115 0 5 1266 856 314 87 60 chr4 89364255 89364904 -66265216 - ERVL-E-int LTR ERVL -826 4888 4152 5 1266 2458 158 109 33 chr4 89366107 89366629 -66263491 - RLTR12A LTR ERVK -4 564 3 5 1266 279 0 0 0 chr4 89367128 89367159 -66262961 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1266 513 0 0 0 chr4 89367159 89367215 -66262905 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1266 1529 232 86 53 chr4 89367808 89368848 -66261272 + L1_Rod LINE L1 898 1967 -3880 5 1266 416 211 30 11 chr4 89368855 89368980 -66261140 - Lx5 LINE L1 -1437 6023 5896 5 1266 207 167 20 20 chr4 89368982 89369031 -66261089 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1266 680 200 10 62 chr4 89369138 89369330 -66260790 - Lx5 LINE L1 -1144 5906 5725 5 1266 38339 16 2 6 chr4 89369311 89375482 -66254638 - L1Md_A LINE L1 0 6582 442 5 1266 400 193 126 5 chr4 89375529 89375678 -66254442 - Lx5 LINE L1 -356 5823 5589 5 1266 409 284 0 0 chr4 89375769 89375871 -66254249 - Lx6 LINE L1 -103 7357 7256 5 1266 305 206 55 20 chr4 89375944 89376242 -66253878 + (TA)n Simple_repeat Simple_repeat 1 308 0 5 1266 297 179 0 0 chr4 89376307 89376374 -66253746 + L1_Rod LINE L1 2359 2425 -3422 5 1266 2619 236 90 21 chr4 89376384 89377377 -66252743 + L1_Rod LINE L1 1967 3027 -2820 5 1266 3358 154 7 5 chr4 89377397 89378012 -66252108 + L1VL4 LINE L1 344 959 -5343 5 1266 2788 83 12 43 chr4 89378014 89378430 -66251690 + RLTR9D LTR ERVK 1 403 0 5 1266 787 279 27 70 chr4 89378432 89378833 -66251287 + ETnERV2-int LTR ERVK 3 386 -2928 5 1266 4785 132 77 21 chr4 89378848 89379810 -66250310 + ETnERV2-int LTR ERVK 1071 2086 -5320 5 1266 6335 137 63 10 chr4 89379834 89381048 -66249072 + ETnERV2-int LTR ERVK 2496 3773 -3633 5 1266 32700 59 7 5 chr4 89381049 89386227 -66243893 + L1Md_T LINE L1 442 5586 -297 5 1266 8330 38 0 0 chr4 89386227 89387256 -66242864 + L1Md_T LINE L1 5587 6582 0 5 1266 4693 42 0 2 chr4 89387256 89387856 -66242264 + L1Md_F2 LINE L1 4988 5586 -297 5 1266 7846 48 6 18 chr4 89387856 89388852 -66241268 + L1Md_F2 LINE L1 5587 6570 -12 5 1266 3804 198 35 49 chr4 89388859 89390571 -66239549 + MMETn-int LTR ERVK 2356 3749 -1095 5 1266 2843 86 13 5 chr4 89390603 89391000 -66239120 + RLTR9D LTR ERVK 4 403 0 5 158 26065 145 12 19 chr4 89391001 89393153 -66236967 + L1_Mus4 LINE L1 1312 3477 -2406 5 1267 2211 95 41 15 chr4 89393153 89393496 -66236624 + L1Md_F2 LINE L1 6231 6582 0 5 1267 26065 131 17 14 chr4 89393496 89396691 -66233429 + L1_Mus4 LINE L1 3478 6630 -6 5 1267 552 285 29 38 chr4 89396682 89396996 -66233124 + L1_Rod LINE L1 3013 3323 -2524 5 1267 323 237 119 22 chr4 89397000 89397134 -66232986 + ORR1D1 LTR MaLR 1 147 -227 5 1267 1467 90 48 0 chr4 89397141 89397375 -66232745 - Lx LINE L1 -1048 5952 5673 5 1267 3472 129 2 12 chr4 89397446 89398024 -66232096 - Lx LINE L1 -811 5825 5253 5 1267 4584 111 17 4 chr4 89398024 89398714 -66231406 + Lx LINE L1 5948 6646 -8 5 1267 746 260 112 5 chr4 89398718 89398923 -66231197 + ORR1D1 LTR MaLR 148 374 0 5 1267 718 249 74 40 chr4 89398923 89399067 -66231053 + L1_Rod LINE L1 3320 3468 -2379 5 1267 396 0 0 0 chr4 89399067 89399111 -66231009 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1267 718 249 74 40 chr4 89399111 89399292 -66230828 + L1_Rod LINE L1 3469 3656 -2191 5 1267 1345 236 137 5 chr4 89400118 89400519 -66229601 - Lx9 LINE L1 -1 7643 7190 5 1267 211 176 0 0 chr4 89400573 89400607 -66229513 + polypyrimidine Low_complexity Low_complexity 3 36 0 5 1267 278 292 21 10 chr4 89401165 89401262 -66228858 + Lx9 LINE L1 6301 6398 -1246 5 1267 1667 145 6 119 chr4 89401265 89401625 -66228495 + ORR1A4 LTR MaLR 3 321 -8 5 1267 2706 298 40 55 chr4 89401626 89402297 -66227823 + Lx9 LINE L1 6392 7056 -588 5 1267 1323 82 22 11 chr4 89402297 89402482 -66227638 - B2_Mm2 SINE B2 -8 187 1 5 1267 2706 298 40 55 chr4 89402482 89402844 -66227276 + Lx9 LINE L1 7057 7409 -235 5 1267 250 336 7 96 chr4 89402844 89402979 -66227141 - RMER12 LTR ERVK -455 867 745 5 1267 27 29 0 0 chr4 89404390 89404424 -66225696 + AT_rich Low_complexity Low_complexity 1 34 0 5 1267 356 265 0 107 chr4 89404752 89404883 -66225237 + PB1D7 SINE Alu 4 120 0 5 1267 8069 37 1 3 chr4 89405013 89405989 -66224131 + L1Md_F2 LINE L1 5609 6582 0 5 1267 21 0 0 0 chr4 89406156 89406177 -66223943 + AT_rich Low_complexity Low_complexity 1 21 0 5 1267 2757 105 11 56 chr4 89406299 89406763 -66223357 - L1_Mm LINE L1 -840 5043 4601 5 1267 267 29 0 0 chr4 89406765 89406789 -66223331 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1267 348 24 0 0 chr4 89406789 89406830 -66223290 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1267 267 29 0 0 chr4 89406830 89406839 -66223281 + (TA)n Simple_repeat Simple_repeat 2 10 0 5 1267 8061 49 1 2 chr4 89407186 89408809 -66221311 - L1Md_F3 LINE L1 0 6584 4964 5 1267 366 136 0 0 chr4 89408806 89408865 -66221255 - L1Md_F3 LINE L1 -1279 4604 4546 5 1267 7058 70 21 7 chr4 89408868 89409825 -66220295 + L1_Mus3 LINE L1 5664 6633 -5 5 1267 24 53 0 0 chr4 89410166 89410204 -66219916 + AT_rich Low_complexity Low_complexity 1 38 0 5 1267 389 261 67 0 chr4 89410241 89410375 -66219745 - Lx9 LINE L1 -13 7631 7489 5 1267 403 292 45 18 chr4 89410380 89410577 -66219543 - Lx8 LINE L1 -246 7227 7011 5 1267 1290 210 61 0 chr4 89410572 89410867 -66219253 - Lx9 LINE L1 -139 7505 7193 5 1267 653 326 78 10 chr4 89410970 89411370 -66218750 - Lx8 LINE L1 -59 7414 6988 5 1267 22335 168 20 49 chr4 89412579 89416524 -66213596 - Lx5 LINE L1 -99 6951 3012 5 1267 696 96 0 0 chr4 89416524 89416639 -66213481 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 5 1267 22335 149 20 65 chr4 89416639 89418326 -66211794 - Lx5 LINE L1 -2866 3011 1503 5 1267 6551 81 2 6 chr4 89418349 89419235 -66210885 - L1Md_F2 LINE L1 0 6582 5700 5 1267 2201 172 22 26 chr4 89419227 89419551 -66210569 - Lx5 LINE L1 -4374 1503 1188 5 1267 3957 79 4 2 chr4 89419551 89420081 -66210039 - L1_Mus3 LINE L1 -6 6632 6102 5 1267 2201 197 65 47 chr4 89420081 89420534 -66209586 - Lx5 LINE L1 -5899 1187 480 5 1267 1173 230 112 75 chr4 89421494 89422011 -66208109 + L1_Rod LINE L1 3513 4048 -1799 5 1267 2366 194 44 14 chr4 89422011 89422514 -66207606 - RMER6C LTR ERVK 0 690 173 5 1267 551 208 139 25 chr4 89422560 89422725 -66207395 + L1_Rod LINE L1 4024 4208 -1669 5 1267 2347 200 52 15 chr4 89422725 89423249 -66206871 + ORR1C2-int LTR MaLR 828 1370 0 5 1267 1181 235 92 22 chr4 89423251 89423421 -66206699 + ORR1C2 LTR MaLR 3 171 -213 5 1267 513 32 0 0 chr4 89423421 89423484 -66206636 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1267 1181 235 92 22 chr4 89423484 89423670 -66206450 + ORR1C2 LTR MaLR 172 383 -1 5 1267 3890 188 40 11 chr4 89423673 89424548 -66205572 + Lx9 LINE L1 6745 7644 0 5 1267 508 397 18 14 chr4 89424894 89425116 -66205004 + B4A SINE B4 2 224 -68 5 1267 603 247 20 7 chr4 89425230 89425377 -66204743 - Lx8 LINE L1 -658 6815 6667 5 1267 1119 300 125 15 chr4 89425431 89425895 -66204225 + Lx8 LINE L1 6959 7473 0 5 1267 414 79 0 0 chr4 89426067 89426130 -66203990 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1267 305 269 57 71 chr4 89426601 89426741 -66203379 - L1MC LINE L1 -2452 5430 5293 5 1267 576 330 66 26 chr4 89426907 89427178 -66202942 - B4A SINE B4 -5 287 6 5 1267 3337 64 28 2 chr4 89427203 89427628 -66202492 + RLTR10C LTR ERVK 1 436 0 5 1267 2925 99 85 2 chr4 89427925 89428370 -66201750 - Lx LINE L1 -2 6652 6171 5 1267 252 0 0 0 chr4 89428525 89428553 -66201567 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1267 420 123 0 0 chr4 89428553 89428625 -66201495 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1267 1488 221 71 51 chr4 89429357 89429768 -66200352 + MTD LTR MaLR 1 419 0 5 1267 1136 241 106 38 chr4 89430144 89430485 -66199635 - ORR1D1 LTR MaLR -8 366 3 5 1267 525 316 21 29 chr4 89430596 89430736 -66199384 - RSINE1 SINE B4 -13 152 14 5 1267 330 310 146 5 chr4 89431923 89432108 -66198012 + B3 SINE B2 1 211 -5 5 1267 401 354 56 10 chr4 89432108 89432305 -66197815 + Lx8 LINE L1 6785 6990 -483 5 1267 298 276 36 115 chr4 89432307 89432446 -66197674 + MT2B LTR ERVL 138 265 -336 5 1267 368 312 39 31 chr4 89432321 89432333 -66197787 + B4 SINE B4 77 142 -150 5 1267 644 204 0 0 chr4 89432333 89432441 -66197679 + B1_Mur4 SINE Alu 2 109 -41 5 1267 2561 59 2 178 chr4 89432496 89432969 -66197151 - RLTR10 LTR ERVK 0 390 1 5 1267 16366 29 1 29 chr4 89432969 89434972 -66195148 - RLTR10-int LTR ERVK -1 1986 41 5 1267 2555 55 2 179 chr4 89434982 89435451 -66194669 - RLTR10 LTR ERVK 0 390 5 5 1267 2105 117 12 26 chr4 89435467 89435809 -66194311 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1267 267 268 239 40 chr4 89435934 89435995 -66194125 + Lx8 LINE L1 7143 7212 -261 5 1267 465 19 0 0 chr4 89435995 89436049 -66194071 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1267 267 268 239 40 chr4 89436049 89436263 -66193857 + Lx8 LINE L1 7213 7473 0 5 1267 294 343 73 22 chr4 89436370 89436507 -66193613 - ORR1E LTR MaLR -215 144 1 5 1267 383 318 55 0 chr4 89436934 89437044 -66193076 + PB1D9 SINE Alu 5 120 0 5 1267 443 242 11 11 chr4 89437547 89437727 -66192393 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1267 181 240 27 0 chr4 89437757 89437832 -66192288 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1267 305 303 183 39 chr4 89437966 89438196 -66191924 - L1M4b LINE L1 -2486 4520 4258 5 1267 234 157 59 0 chr4 89438196 89438247 -66191873 - RMER1A Other Other -460 570 517 5 1267 285 297 140 27 chr4 89438341 89438790 -66191330 - L1M4b LINE L1 -2799 4207 3708 5 1267 244 271 83 28 chr4 89438923 89439190 -66190930 - L1M4b LINE L1 -4591 2511 2126 5 1267 255 294 133 91 chr4 89439226 89440022 -66190098 - L1M4b LINE L1 -5308 2026 1197 5 1267 1132 81 0 0 chr4 89440046 89440194 -66189926 + B1_Mus1 SINE Alu 1 148 0 5 1267 221 111 0 43 chr4 89440195 89440242 -66189878 + A-rich Low_complexity Low_complexity 4 48 0 5 1267 285 356 80 24 chr4 89440537 89440750 -66189370 - L1M4b LINE L1 -6525 809 585 5 1267 285 29 0 0 chr4 89440871 89440905 -66189215 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1267 444 252 90 0 chr4 89441505 89441616 -66188504 - ID_B1 SINE B4 -19 205 85 5 1267 239 320 26 0 chr4 89441772 89441850 -66188270 + GA-rich Low_complexity Low_complexity 1 80 0 5 1267 2944 113 7 28 chr4 89444466 89444930 -66185190 + Lx2 LINE L1 6542 6995 -2 5 1267 434 298 16 62 chr4 89445121 89445314 -66184806 + Lx9 LINE L1 6773 6956 -688 5 1267 802 171 6 117 chr4 89445334 89445513 -66184607 - ORR1C1 LTR MaLR -216 162 4 5 1267 352 265 25 11 chr4 89445681 89445782 -66184338 + ORR1E LTR MaLR 270 377 -2 5 1267 345 344 134 67 chr4 89446982 89447415 -66182705 - MLT2B3 LTR ERVL -2 552 91 6 1267 581 328 20 5 chr4 89447710 89447906 -66182214 - B4A SINE B4 -10 282 84 6 1267 2276 311 74 22 chr4 89448046 89449117 -66181003 - Lx8 LINE L1 -158 7315 6190 6 1267 274 197 16 0 chr4 89449135 89449196 -66180924 - Lx7 LINE L1 0 7696 7635 6 1267 3092 126 8 6 chr4 89449210 89449682 -66180438 - Lx4A LINE L1 -147 6911 6439 6 1267 711 280 63 63 chr4 89449940 89450371 -66179749 - L1_Rod LINE L1 -3552 2295 1865 6 1267 1704 211 62 34 chr4 89450403 89450791 -66179329 - MTD LTR MaLR -14 405 7 6 1267 1165 277 39 8 chr4 89450853 89451481 -66178639 - L1_Rod LINE L1 -4041 1806 1163 6 1267 473 206 0 77 chr4 89451481 89451676 -66178444 + RMER17C LTR ERVK 98 277 -133 6 1267 4829 108 16 3 chr4 89452035 89452729 -66177391 - Lx3B LINE L1 -2 6971 6269 6 1267 3787 92 147 0 chr4 89452729 89453382 -66176738 + L1_Mur1 LINE L1 4570 5318 -568 6 1267 24 53 0 0 chr4 89453447 89453485 -66176635 + AT_rich Low_complexity Low_complexity 1 38 0 6 1267 3255 81 23 8 chr4 89454509 89454981 -66175139 - L1Md_F2 LINE L1 0 6582 6104 6 1267 1324 81 20 3 chr4 89455883 89456083 -66174037 + MTB LTR MaLR 1 218 -201 6 1267 566 190 8 57 chr4 89456246 89456369 -66173751 + B1_Mur4 SINE Alu 34 150 0 6 1267 180 0 0 0 chr4 89456422 89456442 -66173678 + (CCA)n Simple_repeat Simple_repeat 1 20 0 6 1267 2280 45 3 0 chr4 89456533 89456819 -66173301 - L1Md_A LINE L1 -1 6581 6295 6 1267 15516 3 0 0 chr4 89456829 89459341 -66170779 - L1Md_A LINE L1 0 6582 4071 6 1267 33781 35 1 0 chr4 89459336 89465000 -66165120 + L1Md_T LINE L1 1 5589 -297 6 1267 8980 6 0 3 chr4 89465000 89465999 -66164121 + L1Md_T LINE L1 5590 6585 0 6 1267 24049 10 0 1 chr4 89466012 89470506 -66159614 - L1Md_A LINE L1 -1799 4084 1 6 1267 3498 42 28 5 chr4 89470568 89470994 -66159126 - RLTR10C LTR ERVK 0 436 1 6 1267 4490 96 10 3 chr4 89471029 89471656 -66158464 - Lx3_Mus LINE L1 0 7009 6379 6 1267 327 246 34 0 chr4 89472923 89473041 -66157079 - L1MB3 LINE L1 -1 6182 6061 6 1267 231 257 28 19 chr4 89473258 89473365 -66156755 - L1MB3 LINE L1 -746 5437 5330 6 1267 444 328 92 51 chr4 89473381 89473742 -66156378 + MLT1B LTR MaLR 5 500 -5 6 1267 272 289 0 0 chr4 89473833 89473885 -66156235 + ID4 SINE ID 4 55 -28 6 1267 26 50 0 0 chr4 89474492 89474532 -66155588 + AT_rich Low_complexity Low_complexity 1 40 0 6 1267 1417 261 38 54 chr4 89475018 89475516 -66154604 - Lx6 LINE L1 -26 7434 6945 6 1267 262 315 6 95 chr4 89475721 89475879 -66154241 - RMER2 LTR ERV1 -136 431 288 6 1267 423 250 0 51 chr4 89475936 89476054 -66154066 - RMER2 LTR ERV1 -451 116 5 6 1267 732 255 111 24 chr4 89476403 89476744 -66153376 + L1_Rod LINE L1 5079 5449 -398 6 1267 1033 258 59 59 chr4 89476750 89477125 -66152995 + Lx9 LINE L1 6968 7342 -302 6 1267 432 0 0 0 chr4 89477125 89477173 -66152947 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1267 2296 34 0 3 chr4 89477189 89477483 -66152637 + L1Md_F3 LINE L1 6262 6554 -30 6 1267 180 111 0 0 chr4 89477493 89477520 -66152600 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1267 25 31 0 0 chr4 89477550 89477582 -66152538 + AT_rich Low_complexity Low_complexity 1 32 0 6 1267 268 233 271 30 chr4 89477621 89477713 -66152407 + Lx9 LINE L1 7383 7518 -126 6 1267 363 96 0 0 chr4 89477713 89477765 -66152355 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1267 306 0 0 0 chr4 89477765 89477798 -66152322 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1267 268 233 271 30 chr4 89477798 89477903 -66152217 + Lx9 LINE L1 7519 7628 -16 6 1267 278 338 175 7 chr4 89477921 89478064 -66152056 - MLT1H-int LTR MaLR -974 435 269 6 1267 448 114 0 0 chr4 89478578 89478648 -66151472 - L1Md_F2 LINE L1 -11 6571 6502 6 1267 995 33 0 0 chr4 89478648 89478770 -66151350 + L1Md_F2 LINE L1 6032 6153 -429 6 1267 194 378 88 0 chr4 89478873 89479021 -66151099 - MIRb SINE MIR -48 220 60 6 1267 1202 55 0 7 chr4 89479738 89479886 -66150234 + B1_Mus1 SINE Alu 2 148 0 6 1267 215 73 0 47 chr4 89479886 89479929 -66150191 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 6 1267 927 237 126 103 chr4 89480198 89480508 -66149612 - ORR1D1 LTR MaLR -57 317 1 6 1267 2634 220 49 2 chr4 89480508 89481055 -66149065 - ORR1D1-int LTR MaLR 0 1370 798 6 1267 642 228 16 0 chr4 89481053 89481180 -66148940 - ORR1D1 LTR MaLR -81 293 165 6 1267 1282 114 16 0 chr4 89481180 89481364 -66148756 - B2_Mm2 SINE B2 -7 188 2 6 1267 21 57 0 0 chr4 89481427 89481462 -66148658 + AT_rich Low_complexity Low_complexity 1 35 0 6 1267 2204 260 57 8 chr4 89484903 89485536 -66144584 - Lx8 LINE L1 -398 7075 6412 6 1267 711 260 38 22 chr4 89486049 89486234 -66143886 - B3 SINE B2 -27 189 2 6 1267 27 0 0 0 chr4 89486797 89486824 -66143296 + AT_rich Low_complexity Low_complexity 1 27 0 6 1267 266 361 73 8 chr4 89488055 89488178 -66141942 - B1F1 SINE Alu -7 142 12 6 1267 1346 88 0 30 chr4 89488179 89488378 -66141742 + B2_Mm2 SINE B2 3 195 0 6 1267 730 278 36 0 chr4 89488713 89488961 -66141159 + L1MC1 LINE L1 5336 5592 -741 6 1267 528 16 0 0 chr4 89488961 89489022 -66141098 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1267 513 0 0 0 chr4 89489022 89489078 -66141042 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1267 1476 233 69 2 chr4 89489101 89489536 -66140584 + L1MC1 LINE L1 5650 6113 -220 6 1267 191 341 35 12 chr4 89489658 89489744 -66140376 - L2a LINE L2 0 3426 3339 6 1267 591 328 92 13 chr4 89490290 89490596 -66139524 - Lx8 LINE L1 -289 7184 6855 6 1267 816 321 67 57 chr4 89490692 89491187 -66138933 - Lx8 LINE L1 -627 6846 6347 6 1267 297 0 0 0 chr4 89491197 89491230 -66138890 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1267 848 235 164 46 chr4 89491273 89491621 -66138499 + MTD-int LTR MaLR 866 1254 -4 6 1267 904 262 265 15 chr4 89491630 89491957 -66138163 + MTD LTR MaLR 10 418 -1 6 1267 1777 194 71 6 chr4 89491963 89492316 -66137804 - RLTR30 LTR ERV1 0 379 4 6 1267 1190 176 158 104 chr4 89492508 89493031 -66137089 + RMER6C LTR ERVK 1 683 -7 6 1267 21 0 0 0 chr4 89494604 89494625 -66135495 + AT_rich Low_complexity Low_complexity 1 21 0 6 1267 720 122 0 0 chr4 89494749 89494872 -66135248 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1267 1174 62 14 0 chr4 89494974 89495119 -66135001 + B1_Mus2 SINE Alu 1 147 0 6 1267 216 0 0 0 chr4 89495119 89495143 -66134977 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 6 1267 727 278 20 26 chr4 89495435 89495764 -66134356 - Lx7 LINE L1 -1799 5897 5537 6 1267 1490 75 0 5 chr4 89495894 89496094 -66134026 - L1_Mus1 LINE L1 0 6567 6369 6 1267 1287 91 14 50 chr4 89496275 89496494 -66133626 - L1_Mm LINE L1 -958 4925 4715 6 1267 1122 135 0 37 chr4 89496498 89496713 -66133407 - Lx3B LINE L1 -884 6089 5883 6 1267 744 52 0 0 chr4 89496708 89496804 -66133316 + Lx3_Mus LINE L1 5799 5894 -1115 6 1267 5569 191 81 11 chr4 89496808 89498162 -66131958 - Lx3C LINE L1 -3 6973 5541 6 1267 5074 139 52 52 chr4 89498162 89498591 -66131529 + L1_Mur2 LINE L1 4481 4866 -1011 6 1267 1252 112 0 26 chr4 89498591 89498783 -66131337 - B2_Mm2 SINE B2 -6 189 3 6 1267 5074 139 52 52 chr4 89498783 89499397 -66130723 + L1_Mur2 LINE L1 4867 5524 -353 6 1267 341 326 87 21 chr4 89502067 89502308 -66127812 + L1M5 LINE L1 5565 5821 -303 1 1267 282 277 0 0 chr4 89502995 89503060 -66127060 - RMER30 DNA MER1_type -1 201 137 2 1267 499 215 65 0 chr4 89503217 89503324 -66126796 - B1_Mur1 SINE Alu -5 144 31 3 1267 7417 81 13 7 chr4 89503355 89504881 -66125239 - Lx3_Mus LINE L1 -637 6372 4842 4 1267 29112 120 28 34 chr4 89504887 89511133 -66118987 - L1_Mus2 LINE L1 -3 6633 220 5 1267 3430 114 28 0 chr4 89511369 89511903 -66118217 - L1_Mur1 LINE L1 -1006 4880 4332 6 1267 2171 61 4 0 chr4 89511916 89512195 -66117925 - LTRIS5 LTR ERV1 -79 368 89 7 1267 6506 57 11 0 chr4 89512195 89513019 -66117101 - L1Md_F2 LINE L1 0 6582 5750 8 1267 12465 59 1 0 chr4 89513019 89514588 -66115532 + L1Md_F2 LINE L1 4191 5760 -123 8 1267 1998 98 3 29 chr4 89514587 89514901 -66115219 - L1_Mur1 LINE L1 -1542 4344 4039 6 1267 3942 97 23 3 chr4 89514920 89515488 -66114632 + Lx3_Mus LINE L1 6423 7001 -8 9 1267 779 302 65 127 chr4 89515550 89516140 -66113980 - RLTR18 LTR ERVK -4 612 67 1 1267 669 118 0 0 chr4 89516153 89516263 -66113857 + (TC)n Simple_repeat Simple_repeat 2 111 0 1 1267 2236 306 80 24 chr4 89516325 89517279 -66112841 - Lx8 LINE L1 -358 7115 6109 1 1267 1152 256 154 18 chr4 89517291 89517992 -66112128 - Lx8 LINE L1 -1592 6052 5226 1 1267 450 260 109 23 chr4 89517994 89518250 -66111870 + L1_Mur3 LINE L1 4182 4459 -1421 1 1267 721 232 50 31 chr4 89518242 89518464 -66111656 + L1_Mur3 LINE L1 536 761 -6951 1 1267 1235 167 124 0 chr4 89518485 89518665 -66111455 + Lx7 LINE L1 6701 6901 -795 1 1267 228 35 0 0 chr4 89518665 89518694 -66111426 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1267 1235 167 124 0 chr4 89518694 89518771 -66111349 + Lx7 LINE L1 6902 6989 -707 1 1267 881 108 50 0 chr4 89519240 89519379 -66110741 - L1_Mus2 LINE L1 0 6566 6421 1 1267 1404 95 5 5 chr4 89519380 89519591 -66110529 + L1_Mm LINE L1 5166 5376 -507 1 1267 3209 54 0 5 chr4 89519626 89520036 -66110084 - L1Md_F2 LINE L1 -14 6568 6161 1 1267 1742 245 101 14 chr4 89520243 89520739 -66109381 - Lx5 LINE L1 0 7050 6512 2 1267 2616 57 19 39 chr4 89520751 89521156 -66108964 - L1Md_F2 LINE L1 0 6582 6205 2 1267 478 314 13 0 chr4 89521942 89522095 -66108025 - MLT1B LTR MaLR -29 361 207 2 158 8149 84 91 0 chr4 89522125 89523707 -66106413 + L1Md_F2 LINE L1 3587 5580 -297 2 1268 8155 44 2 0 chr4 89523707 89524701 -66105419 + L1Md_F2 LINE L1 5587 6582 0 2 1268 980 266 68 16 chr4 89526063 89526384 -66103736 - RMER15 LTR ERVL 0 575 238 2 1268 350 322 0 33 chr4 89527061 89527214 -66102906 - L1ME1 LINE L1 0 6164 6019 2 1268 611 330 6 6 chr4 89527346 89527529 -66102591 - MTD LTR MaLR -217 202 20 2 1268 21 36 0 0 chr4 89527710 89527738 -66102382 + AT_rich Low_complexity Low_complexity 1 28 0 2 1268 1059 176 0 0 chr4 89527820 89527985 -66102135 - RMER6A LTR ERVK 0 756 592 2 1268 570 121 11 0 chr4 89527983 89528074 -66102046 - RMER6A LTR ERVK -664 92 1 2 1268 352 162 15 0 chr4 89528094 89528162 -66101958 - Lx4B LINE L1 -581 6477 6409 2 1268 4921 135 2 12 chr4 89528161 89528985 -66101135 + L1_Mur2 LINE L1 3376 4191 -1686 3 1268 289 324 43 43 chr4 89529635 89529819 -66100301 - L1MC4 LINE L1 -1043 6999 6816 3 1268 364 282 49 157 chr4 89530105 89530290 -66099830 - ID_B1 SINE B4 -59 165 1 3 1268 1521 119 0 0 chr4 89530316 89530543 -66099577 - L1_Mus1 LINE L1 -614 5269 5043 3 1268 7559 76 4 6 chr4 89530538 89531811 -66098309 + L1_Mus1 LINE L1 5298 6567 0 3 1268 566 314 35 11 chr4 89531847 89532021 -66098099 + B3 SINE B2 29 206 -10 3 1268 207 373 21 50 chr4 89532456 89532597 -66097523 + MIR SINE MIR 105 241 -21 3 1268 25 0 0 0 chr4 89532681 89532706 -66097414 + AT_rich Low_complexity Low_complexity 1 25 0 3 1268 914 252 19 29 chr4 89532707 89532915 -66097205 - B3 SINE B2 -5 211 6 3 1268 237 185 0 0 chr4 89533671 89533736 -66096384 + T-rich Low_complexity Low_complexity 1 65 0 3 1268 1921 26 0 0 chr4 89533740 89533968 -66096152 - L1Md_A LINE L1 -4 6578 6351 3 1268 4191 144 8 18 chr4 89534073 89534786 -66095334 - Lx3C LINE L1 -7 6969 6264 4 1268 307 196 21 11 chr4 89534882 89534975 -66095145 + L1_Mus3 LINE L1 6539 6632 -6 4 1268 570 29 0 0 chr4 89537690 89537758 -66092362 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 1268 632 334 114 38 chr4 89538687 89539238 -66090882 + L3 LINE CR1 3563 4155 -334 4 1268 21 36 0 0 chr4 89540212 89540240 -66089880 + AT_rich Low_complexity Low_complexity 1 28 0 4 1268 807 293 35 31 chr4 89540251 89540540 -66089580 + Lx8 LINE L1 6197 6486 -987 4 1268 696 341 14 33 chr4 89540543 89540569 -66089551 + Lx9 LINE L1 6998 7023 -621 4 1268 2373 52 26 6 chr4 89540569 89540880 -66089240 + L1Md_F2 LINE L1 6266 6582 0 4 1268 696 341 14 33 chr4 89540880 89541214 -66088906 + Lx9 LINE L1 7024 7351 -293 4 1268 262 351 43 79 chr4 89541228 89541367 -66088753 + RMER12 LTR ERVK 718 851 -471 4 1268 279 0 0 0 chr4 89541369 89541400 -66088720 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1268 453 36 0 0 chr4 89541399 89541454 -66088666 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1268 340 150 12 12 chr4 89541481 89541562 -66088558 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1268 27 49 0 0 chr4 89541658 89541699 -66088421 + AT_rich Low_complexity Low_complexity 1 41 0 5 1268 2660 64 207 21 chr4 89542181 89542518 -66087602 + Lx3_Mus LINE L1 6417 6833 -176 5 1268 2285 139 46 52 chr4 89542518 89542996 -66087124 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1268 2660 64 207 21 chr4 89542996 89543088 -66087032 + Lx3_Mus LINE L1 6834 6926 -83 5 1268 210 174 0 0 chr4 89543089 89543135 -66086985 + A-rich Low_complexity Low_complexity 1 46 0 5 1268 14323 21 3 0 chr4 89544308 89546641 -66083479 - L1Md_T LINE L1 -1 6581 4239 5 1268 7310 21 0 0 chr4 89546633 89547489 -66082631 + L1Md_T LINE L1 3386 4241 -1642 5 1268 477 0 0 0 chr4 89548669 89548722 -66081398 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1268 351 0 0 0 chr4 89548722 89548760 -66081360 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1268 1672 31 0 0 chr4 89549303 89549495 -66080625 + B2_Mm1a SINE B2 1 192 -1 5 1268 1117 71 0 0 chr4 89551137 89551278 -66078842 + B1_Mus1 SINE Alu 1 141 -7 6 1268 663 104 0 0 chr4 89551281 89551396 -66078724 + (CATA)n Simple_repeat Simple_repeat 2 116 0 6 1268 1234 220 7 29 chr4 89551503 89551784 -66078336 + RLTR12A LTR ERVK 290 564 -4 6 1268 619 145 265 54 chr4 89551884 89551950 -66078170 + Lx9 LINE L1 7397 7476 -168 6 1268 492 62 0 0 chr4 89551950 89552014 -66078106 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1268 619 145 265 54 chr4 89552014 89552151 -66077969 + Lx9 LINE L1 7477 7643 -1 6 1268 1519 102 9 172 chr4 89552294 89552625 -66077495 + Lx3A LINE L1 6689 6965 -16 6 1268 234 0 0 0 chr4 89552625 89552651 -66077469 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1268 394 157 57 57 chr4 89552651 89552663 -66077457 + Lx3_Mus LINE L1 6986 6994 -15 6 1268 9188 84 7 0 chr4 89552696 89554723 -66075397 - L1_Mus1 LINE L1 -1 6566 4524 6 1268 22 35 0 0 chr4 89554809 89554838 -66075282 + AT_rich Low_complexity Low_complexity 1 29 0 6 1268 1127 226 128 105 chr4 89554856 89555373 -66074747 + MT2A LTR ERVL 3 530 -3 7 1268 348 43 0 0 chr4 89555390 89555436 -66074684 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 7 1268 1140 307 95 6 chr4 89555640 89556062 -66074058 + L1_Mur3 LINE L1 4014 4471 -1409 7 1268 209 33 33 0 chr4 89556062 89556092 -66074028 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1268 1140 307 94 8 chr4 89556092 89556393 -66073727 + L1_Mur3 LINE L1 4472 4831 -1315 7 1268 450 0 0 0 chr4 89556524 89556574 -66073546 + (CAGAA)n Simple_repeat Simple_repeat 3 52 0 7 1268 546 296 0 0 chr4 89556600 89556762 -66073358 + L1M2 LINE L1 4844 5005 -1138 7 1268 2870 96 8 8 chr4 89556759 89557159 -66072961 - Lx3_Mus LINE L1 -151 5735 5336 7 1268 8290 101 31 8 chr4 89557156 89558408 -66071712 + Lx3_Mus LINE L1 5728 7008 -1 7 1268 188 331 99 62 chr4 89558678 89558839 -66071281 + MIR SINE MIR 1 167 -95 7 1268 654 293 127 12 chr4 89558841 89559100 -66071020 + B4A SINE B4 2 290 -2 7 1268 1281 253 33 36 chr4 89559437 89559798 -66070322 + ORR1D2 LTR MaLR 11 370 0 7 1268 420 171 0 0 chr4 89560009 89560091 -66070029 + GA-rich Low_complexity Low_complexity 1 82 0 8 1268 479 45 15 0 chr4 89561967 89562033 -66068087 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 8 1268 26 0 0 0 chr4 89562041 89562067 -66068053 + AT_rich Low_complexity Low_complexity 1 26 0 8 1268 21 36 0 0 chr4 89562414 89562442 -66067678 + AT_rich Low_complexity Low_complexity 1 28 0 8 1268 202 350 51 8 chr4 89563355 89563473 -66066647 - MIR SINE MIR -44 218 96 8 1268 1059 49 0 0 chr4 89564514 89564656 -66065464 + (GA)n Simple_repeat Simple_repeat 2 143 0 8 1268 427 184 25 107 chr4 89564666 89564788 -66065332 + MT2B LTR ERVL 153 264 -337 8 1268 1147 21 0 0 chr4 89564681 89564823 -66065297 + B1_Mm SINE Alu 6 147 0 8 1268 888 257 155 4 chr4 89564920 89565197 -66064923 + MTEb LTR MaLR 59 377 -2 8 1268 777 136 0 0 chr4 89565595 89565735 -66064385 + (CA)n Simple_repeat Simple_repeat 2 141 0 8 1268 663 13 0 0 chr4 89566900 89566976 -66063144 + (TG)n Simple_repeat Simple_repeat 1 76 0 9 1268 381 343 7 34 chr4 89567009 89567157 -66062963 - RSINE1 SINE B4 -19 146 3 9 1268 341 270 22 0 chr4 89567496 89567585 -66062535 - L1MD2 LINE L1 -4937 1703 1613 9 1268 406 397 48 24 chr4 89568003 89568292 -66061828 - L1MD2 LINE L1 -5637 910 615 9 1268 1098 23 0 0 chr4 89568454 89568583 -66061537 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 9 1268 188 34 0 33 chr4 89569550 89569580 -66060540 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1268 419 48 0 16 chr4 89570853 89570916 -66059204 + (CAA)n Simple_repeat Simple_repeat 2 63 0 9 1268 498 199 21 7 chr4 89571247 89571389 -66058731 - Lx9 LINE L1 -2 7642 7499 9 1268 405 0 0 0 chr4 89571748 89571793 -66058327 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 9 1268 380 258 56 0 chr4 89571929 89572018 -66058102 - B1F SINE Alu -7 142 49 9 1268 2385 128 42 0 chr4 89572334 89572718 -66057402 - Lx2A1 LINE L1 -5 7003 6604 9 1268 771 194 0 8 chr4 89572890 89573020 -66057100 - MTC LTR MaLR -8 413 285 1 1268 460 290 47 31 chr4 89573017 89573209 -66056911 - RLTR16 LTR ERVK -279 226 32 1 1268 770 189 12 0 chr4 89574020 89574184 -66055936 + GA-rich Low_complexity Low_complexity 3 168 0 1 1268 194 0 39 0 chr4 89575824 89575850 -66054270 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1268 1084 88 0 20 chr4 89575855 89576005 -66054115 - B1_Mus1 SINE Alu 0 148 2 1 1268 1792 196 34 6 chr4 89576094 89576443 -66053677 - ORR1B2 LTR MaLR -8 359 1 1 1268 531 287 39 0 chr4 89576503 89576632 -66053488 + RSINE1 SINE B4 4 137 -28 1 1268 24 0 0 0 chr4 89577588 89577612 -66052508 + AT_rich Low_complexity Low_complexity 1 24 0 1 1268 304 323 29 29 chr4 89577616 89577718 -66052402 - B1F SINE Alu -39 110 9 1 1268 1553 245 107 39 chr4 89577800 89578267 -66051853 - Lx6 LINE L1 -15 7445 6947 1 1268 307 197 70 0 chr4 89578268 89578339 -66051781 - ID_B1 SINE B4 -8 216 141 1 1268 275 257 98 98 chr4 89578339 89578380 -66051740 - PB1D7 SINE Alu -8 112 1 1 1268 417 342 40 48 chr4 89578824 89578950 -66051170 - RSINE1 SINE B4 -2 163 39 1 1268 7217 138 38 4 chr4 89579490 89580687 -66049433 + Lx2 LINE L1 5757 6993 -4 1 1268 459 48 0 0 chr4 89581404 89581466 -66048654 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1268 2471 137 32 23 chr4 89581484 89581924 -66048196 + BGLII_A LTR ERVK 1 444 -1 1 1268 528 56 0 0 chr4 89581981 89582053 -66048067 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1268 423 361 119 16 chr4 89582054 89582375 -66047745 - Lx9 LINE L1 -226 7418 7065 1 1268 24 0 0 0 chr4 89582504 89582528 -66047592 + AT_rich Low_complexity Low_complexity 1 24 0 1 1268 258 297 60 64 chr4 89582881 89583147 -66046973 + L1_Mur3 LINE L1 1077 1341 -6387 1 1268 1213 273 28 52 chr4 89583378 89583912 -66046208 + L1_Mur3 LINE L1 1489 2009 -3871 1 1268 2065 207 41 0 chr4 89583914 89584305 -66045815 + MTC LTR MaLR 1 407 -14 1 1268 384 286 176 20 chr4 89584321 89584559 -66045561 + L1_Mur3 LINE L1 2025 2285 -3595 1 1268 306 50 0 0 chr4 89584559 89584599 -66045521 + (CAA)n Simple_repeat Simple_repeat 1 40 0 1 1268 384 286 176 20 chr4 89584599 89584706 -66045414 + L1_Mur3 LINE L1 2286 2423 -3457 1 1268 1365 265 93 3 chr4 89584944 89585273 -66044847 - MTD LTR MaLR -5 414 57 1 1268 1548 58 31 18 chr4 89585273 89585501 -66044619 - L1Md_F2 LINE L1 0 6582 6352 1 1268 1365 265 93 3 chr4 89585501 89585549 -66044571 - MTD LTR MaLR -363 56 4 1 1268 404 337 43 24 chr4 89585569 89585779 -66044341 + Lx9 LINE L1 7077 7290 -354 1 1268 425 200 57 43 chr4 89585781 89585922 -66044198 - Lx2B LINE L1 -4 6996 6854 1 1268 483 336 22 28 chr4 89585922 89586240 -66043880 + Lx9 LINE L1 7278 7593 -51 1 1268 1397 272 61 30 chr4 89586335 89586971 -66043149 + L1_Mur3 LINE L1 3321 3976 -1904 1 1268 6959 177 53 54 chr4 89587009 89587662 -66042458 + Lx8 LINE L1 1426 2057 -3823 1 1268 186 43 0 0 chr4 89587662 89587685 -66042435 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1268 6959 177 53 54 chr4 89587685 89588651 -66041469 + Lx8 LINE L1 2058 3050 -2830 1 1268 991 190 71 0 chr4 89588651 89588862 -66041258 - URR1A DNA MER1_type 0 226 1 1 1268 6959 177 53 54 chr4 89588862 89588961 -66041159 + Lx8 LINE L1 3051 3143 -2737 1 1268 198 0 0 0 chr4 89589737 89589759 -66040361 + (TAA)n Simple_repeat Simple_repeat 3 24 0 1 1268 1089 254 14 7 chr4 89589851 89590128 -66039992 + Lx7 LINE L1 7090 7368 -328 1 1268 252 0 0 0 chr4 89590207 89590235 -66039885 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1268 992 183 182 9 chr4 89590304 89590535 -66039585 - Lx4B LINE L1 -4 7054 6784 1 1268 4147 58 0 0 chr4 89590747 89591263 -66038857 - L1_Mus1 LINE L1 0 6567 6052 1 1268 970 220 86 45 chr4 89591278 89591545 -66038575 + Lx7 LINE L1 7419 7696 0 1 1268 3035 284 71 34 chr4 89591599 89592912 -66037208 + Lx8 LINE L1 4010 5371 -509 1 1268 2110 165 13 0 chr4 89592917 89593299 -66036821 - L1_Mur2 LINE L1 -536 5341 4955 1 1268 6998 112 30 15 chr4 89593291 89594595 -66035525 + Lx LINE L1 5322 6648 -6 1 1268 373 215 35 78 chr4 89594593 89594709 -66035411 + Lx8 LINE L1 5363 5473 -407 1 1268 1223 313 154 42 chr4 89594693 89595671 -66034449 + Lx8 LINE L1 5831 6918 -555 1 1268 336 200 0 0 chr4 89595837 89595912 -66034208 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1268 1393 176 79 67 chr4 89596651 89596980 -66033140 + RMER1B Other Other 543 875 -191 1 1268 1846 173 145 13 chr4 89596981 89597373 -66032747 + RMER19B LTR ERVK 2 445 -457 1 1268 1037 159 57 21 chr4 89597352 89597545 -66032575 + RMER19B LTR ERVK 691 890 -12 1 1268 663 197 5 102 chr4 89597556 89597771 -66032349 + RMER1B Other Other 869 1062 -4 1 1268 3801 169 106 32 chr4 89598196 89599043 -66031077 - RLTR22_Mur LTR ERVK -938 910 1 1 1268 559 216 191 0 chr4 89599151 89599313 -66030807 + ORR1B2 LTR MaLR 1 193 -174 1 1268 852 258 40 37 chr4 89599478 89599800 -66030320 + RLTR15 LTR ERVK 1 323 -36 1 1268 1396 66 22 0 chr4 89600871 89601053 -66029067 - B2_Mm2 SINE B2 -9 186 1 1 1268 3663 69 78 8 chr4 89601613 89602127 -66027993 - L1_Mus3 LINE L1 0 6638 6089 1 1268 1838 113 95 90 chr4 89602141 89602529 -66027591 - ORR1B1 LTR MaLR -4 390 1 1 1268 4288 222 28 8 chr4 89603119 89604001 -66026119 - Lx2B LINE L1 -13 6987 6088 1 1268 2172 214 51 17 chr4 89604694 89604997 -66025123 - RLTR20B3 LTR ERVK 0 577 280 1 1268 459 0 0 0 chr4 89604997 89605048 -66025072 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1268 2172 214 51 17 chr4 89605048 89605214 -66024906 - RLTR20B3 LTR ERVK -298 279 93 1 1268 225 171 49 0 chr4 89605478 89605519 -66024601 + MLT1M LTR MaLR 233 275 -397 1 1268 393 227 33 24 chr4 89607545 89607675 -66022445 + MLT1A1 LTR MaLR 217 396 -12 1 1268 368 208 14 14 chr4 89609367 89609440 -66020680 - ID4_ SINE ID -7 76 4 1 1268 1072 328 106 10 chr4 89609441 89609931 -66020189 + Lx8 LINE L1 6816 7352 -121 1 1268 240 111 0 0 chr4 89610263 89610299 -66019821 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1268 2233 33 7 7 chr4 89610568 89610843 -66019277 - L1Md_F3 LINE L1 -2 6582 6308 1 1268 2301 263 107 17 chr4 89611400 89612219 -66017901 + RCHARR1 DNA MER1_type 10 902 -72 1 1268 297 0 0 0 chr4 89612251 89612284 -66017836 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1268 1460 209 58 61 chr4 89612301 89612496 -66017624 + Lx9 LINE L1 6957 7153 -491 1 1268 825 96 101 14 chr4 89612496 89612634 -66017486 - L1Md_F2 LINE L1 -12 6570 6421 1 1268 1460 209 58 61 chr4 89612634 89612800 -66017320 + Lx9 LINE L1 7154 7317 -327 1 1268 333 118 0 0 chr4 89613051 89613102 -66017018 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1268 748 255 71 14 chr4 89613691 89613902 -66016218 - Lx6 LINE L1 -6 7454 7232 1 1268 23 33 0 0 chr4 89614000 89614030 -66016090 + AT_rich Low_complexity Low_complexity 1 30 0 1 1268 482 286 101 24 chr4 89616877 89617085 -66013035 + MER82 DNA MER2_type 9 232 -421 1 1268 433 319 25 76 chr4 89617422 89617619 -66012501 - B4A SINE B4 0 292 106 1 1268 370 284 31 16 chr4 89617692 89617821 -66012299 + MER82 DNA MER2_type 210 340 -313 1 1268 3673 117 20 10 chr4 89617827 89618423 -66011697 - Lx3_Mus LINE L1 -1 7008 6407 1 1268 559 149 14 11 chr4 89618426 89618548 -66011572 + Lx3A LINE L1 6283 6401 -575 1 1268 1740 151 37 25 chr4 89620337 89620690 -66009430 - RLTR15 LTR ERVK -2 357 1 1 1268 4433 111 44 1 chr4 89620789 89621473 -66008647 + L1_Mus4 LINE L1 5924 6636 0 1 1268 471 170 0 0 chr4 89621824 89621924 -66008196 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1268 1190 249 30 102 chr4 89622082 89622453 -66007667 + MTD LTR MaLR 5 348 -71 1 1268 267 54 0 0 chr4 89622647 89622684 -66007436 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1268 584 347 0 0 chr4 89622684 89622831 -66007289 - RSINE1 SINE B4 -16 149 3 1 1268 27 0 0 0 chr4 89625076 89625103 -66005017 + AT_rich Low_complexity Low_complexity 1 27 0 1 1268 246 62 0 0 chr4 89627213 89627245 -66002875 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1268 551 273 61 0 chr4 89627504 89627636 -66002484 + B1_Mur1 SINE Alu 5 144 -5 1 1268 790 229 48 38 chr4 89628056 89628265 -66001855 - ORR1D1 LTR MaLR -1 373 163 1 1268 848 196 35 6 chr4 89628347 89628521 -66001599 - ORR1D1 LTR MaLR -195 179 1 1 1268 1736 47 0 0 chr4 89628855 89629069 -66001051 - L1Md_T LINE L1 0 6582 6369 1 1268 5076 27 0 8 chr4 89629069 89629673 -66000447 + L1Md_T LINE L1 5760 6358 -224 1 1268 281 296 77 59 chr4 89630981 89631150 -65998970 + MLT2B5 LTR ERVL 155 326 -391 1 1268 495 0 0 0 chr4 89633734 89633789 -65996331 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1268 698 300 40 0 chr4 89634234 89634434 -65995686 - B3 SINE B2 -5 211 4 1 1268 362 282 35 0 chr4 89635772 89635857 -65994263 + RSINE1 SINE B4 3 90 -75 1 1268 616 336 14 41 chr4 89636736 89636956 -65993164 + MLT1E1 LTR MaLR 433 646 -8 1 1268 1601 294 38 13 chr4 89637202 89637726 -65992394 - Lx7 LINE L1 -278 7418 6882 1 1268 2333 279 61 21 chr4 89637723 89638496 -65991624 - Lx7 LINE L1 -1031 6665 5862 1 1268 3519 218 41 169 chr4 89638498 89639435 -65990685 + Lx7 LINE L1 4463 5347 -533 1 1268 410 268 145 8 chr4 89639435 89639559 -65990561 + B1_Mur4 SINE Alu 9 149 -1 1 1268 3519 218 41 169 chr4 89639559 89640081 -65990039 + Lx7 LINE L1 5348 5842 -38 1 1268 255 125 0 0 chr4 89640250 89640290 -65989830 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 1268 970 106 12 12 chr4 89640783 89640946 -65989174 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1 1268 337 325 69 34 chr4 89641557 89641732 -65988388 - MLT2B3 LTR ERVL -344 210 30 1 1268 212 393 0 0 chr4 89641792 89641904 -65988216 + MIR SINE MIR 78 189 -73 1 1268 536 287 19 6 chr4 89643793 89643951 -65986169 - Lx5 LINE L1 -217 6833 6674 1 1268 1967 96 36 0 chr4 89644030 89644311 -65985809 - L1_Mus3 LINE L1 -8 6630 6340 1 1268 439 231 6 140 chr4 89644312 89644483 -65985637 - Lx5 LINE L1 -381 6669 6522 1 1268 531 45 0 0 chr4 89644505 89644571 -65985549 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1268 537 176 23 8 chr4 89644915 89645047 -65985073 + CT-rich Low_complexity Low_complexity 4 137 0 1 1268 273 168 78 0 chr4 89645258 89645330 -65984790 + L1_Rod LINE L1 5090 5222 -921 1 1268 3543 229 19 13 chr4 89645406 89646187 -65983933 - Lx5 LINE L1 -461 6589 5804 1 1268 2019 221 22 15 chr4 89646192 89646648 -65983472 + Lx5 LINE L1 6588 7046 -4 1 1268 308 228 48 16 chr4 89646757 89646882 -65983238 + L1_Rod LINE L1 5308 5436 -411 1 1268 283 276 0 0 chr4 89646903 89646979 -65983141 + L1M2 LINE L1 5477 5552 -748 1 1268 2091 226 193 40 chr4 89647942 89648683 -65981437 - RMER1B Other Other -9 1057 204 1 1268 347 0 23 0 chr4 89648833 89648876 -65981244 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1268 242 29 0 28 chr4 89649524 89649560 -65980560 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1268 983 91 8 0 chr4 89649560 89649692 -65980428 - B1_Mm SINE Alu -2 145 13 1 1268 814 259 54 102 chr4 89649691 89650044 -65980076 + MTD LTR MaLR 84 419 0 1 1268 272 293 13 0 chr4 89650679 89650754 -65979366 + PB1D7 SINE Alu 18 93 -27 1 1268 26 30 0 0 chr4 89650782 89650815 -65979305 + AT_rich Low_complexity Low_complexity 1 33 0 2 1268 363 23 0 0 chr4 89650815 89650859 -65979261 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1268 194 194 15 0 chr4 89651007 89651074 -65979046 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1268 369 376 87 100 chr4 89651136 89651777 -65978343 + MER21B LTR ERV1 22 654 -209 2 1268 21 0 0 0 chr4 89651868 89651889 -65978231 + AT_rich Low_complexity Low_complexity 1 21 0 2 1268 258 233 151 0 chr4 89652472 89652545 -65977575 + MER46C DNA MER2_type 245 328 -10 2 1268 249 323 63 0 chr4 89652647 89652774 -65977346 - MIR SINE MIR -24 238 104 2 1268 397 365 12 37 chr4 89652791 89653134 -65976986 + Lx9 LINE L1 6916 7372 -272 2 1268 545 0 15 0 chr4 89653161 89653226 -65976894 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1269 36 77 0 0 chr4 89653267 89653345 -65976775 + AT_rich Low_complexity Low_complexity 1 78 0 2 1269 222 167 0 23 chr4 89653428 89653471 -65976649 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1269 1376 91 16 0 chr4 89653532 89653718 -65976402 - B2_Mm2 SINE B2 -6 189 1 2 1269 430 314 139 100 chr4 89654379 89654735 -65975385 + ORR1E LTR MaLR 1 370 0 2 1269 21 0 0 0 chr4 89655371 89655392 -65974728 + AT_rich Low_complexity Low_complexity 1 21 0 2 1269 897 128 0 24 chr4 89655393 89655561 -65974559 - Lx3A LINE L1 -6 6975 6812 2 1269 1149 186 23 0 chr4 89655856 89656077 -65974043 - URR1A DNA MER1_type 0 226 1 2 1269 459 0 0 0 chr4 89657696 89657747 -65972373 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1269 486 33 0 0 chr4 89657747 89657806 -65972314 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1269 280 239 15 15 chr4 89658090 89658158 -65971962 + GA-rich Low_complexity Low_complexity 1 68 0 2 1269 410 344 33 116 chr4 89660343 89660519 -65969601 - MLT1D LTR MaLR -8 497 322 2 1269 351 0 0 0 chr4 89660519 89660558 -65969562 + (TTC)n Simple_repeat Simple_repeat 1 39 0 2 1269 410 344 33 116 chr4 89660558 89660575 -65969545 - MLT1D LTR MaLR -184 321 315 2 1269 695 158 19 70 chr4 89660575 89660732 -65969388 - Lx3C LINE L1 -8 6968 6820 2 1269 410 344 33 116 chr4 89660732 89661018 -65969102 - MLT1D LTR MaLR -191 314 57 2 1269 4530 67 2 0 chr4 89661036 89661619 -65968501 - L1_Mus1 LINE L1 0 6567 5984 2 1269 1133 257 80 6 chr4 89661890 89662203 -65967917 - Lx6 LINE L1 -758 6702 6367 2 1269 2473 242 96 18 chr4 89662203 89662366 -65967754 + Lx6 LINE L1 6718 6882 -578 2 1269 753 12 0 0 chr4 89662366 89662452 -65967668 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1269 2473 242 96 18 chr4 89662452 89662962 -65967158 + Lx6 LINE L1 6883 7443 -17 2 1269 300 141 42 0 chr4 89663125 89663196 -65966924 - L1Md_A LINE L1 -1 6581 6508 2 1269 1297 193 29 0 chr4 89663230 89663473 -65966647 - Lx9 LINE L1 -448 7196 6947 2 1269 1294 203 124 47 chr4 89663484 89663809 -65966311 + Lx9 LINE L1 7182 7520 -124 2 1269 2401 103 6 0 chr4 89663809 89664158 -65965962 - L1_Mus3 LINE L1 -6 6632 6282 2 1269 1294 203 124 47 chr4 89664158 89664260 -65965860 + Lx9 LINE L1 7521 7641 -3 2 1269 594 41 0 0 chr4 89665296 89665369 -65964751 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1269 486 120 0 0 chr4 89665369 89665443 -65964677 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1269 729 245 17 81 chr4 89668238 89668456 -65961664 + ORR1D1 LTR MaLR 2 205 -189 2 1269 933 261 31 22 chr4 89668456 89668683 -65961437 + Lx5 LINE L1 6819 7047 -3 2 1269 726 318 64 21 chr4 89668704 89669056 -65961064 + Lx8 LINE L1 6876 7271 -202 2 1269 3617 94 20 6 chr4 89669080 89669591 -65960529 - Lx3A LINE L1 0 6981 6464 2 1269 1235 79 6 0 chr4 89669593 89669758 -65960362 + Lx3A LINE L1 6265 6430 -551 2 1269 212 136 0 43 chr4 89669976 89670022 -65960098 + A-rich Low_complexity Low_complexity 2 45 0 2 1269 212 299 13 0 chr4 89671532 89671609 -65958511 + CT-rich Low_complexity Low_complexity 1 78 0 2 1269 1342 170 100 33 chr4 89671984 89672283 -65957837 + Lx5 LINE L1 6732 7050 0 2 1269 215 90 0 82 chr4 89674822 89674895 -65955225 + T-rich Low_complexity Low_complexity 6 72 0 2 1269 295 311 0 11 chr4 89675127 89675218 -65954902 - MTEa LTR MaLR -287 92 3 2 1269 635 282 27 27 chr4 89675280 89675466 -65954654 + RMER30 DNA MER1_type 5 190 -12 2 1269 1146 238 9 15 chr4 89675726 89676050 -65954070 - L1_Mur3 LINE L1 -3163 2717 2396 2 1269 882 239 50 0 chr4 89676781 89676982 -65953138 + B3 SINE B2 1 211 -5 2 1269 1908 144 3 58 chr4 89677150 89677496 -65952624 + L1_Mur2 LINE L1 3970 4296 -1581 2 1269 895 113 19 19 chr4 89677504 89677666 -65952454 + Lx2B LINE L1 5811 5972 -1028 2 1269 2244 114 9 17 chr4 89677637 89677984 -65952136 + Lx2B LINE L1 6389 6732 -268 2 1269 2935 81 8 2 chr4 89677996 89678393 -65951727 + MTB_Mm LTR MaLR 9 407 0 2 1269 1489 173 0 11 chr4 89678393 89678667 -65951453 + Lx2B LINE L1 6730 7000 0 2 1269 338 243 111 59 chr4 89678667 89678820 -65951300 + L1ME1 LINE L1 5707 5867 -312 2 1269 216 0 0 0 chr4 89679210 89679234 -65950886 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1269 753 284 133 9 chr4 89679858 89680181 -65949939 - MTEa LTR MaLR -6 373 11 2 1269 637 57 47 9 chr4 89680484 89680590 -65949530 + L1Md_F3 LINE L1 6473 6582 -2 2 1269 379 256 0 35 chr4 89680744 89680914 -65949206 + CT-rich Low_complexity Low_complexity 3 166 0 2 1269 363 352 24 16 chr4 89680994 89681121 -65948999 - LTR16A LTR ERVL -300 151 24 2 1269 894 284 31 10 chr4 89682002 89682290 -65947830 - Lx6 LINE L1 -30 7430 7137 2 1269 400 276 28 35 chr4 89682270 89682387 -65947733 + Lx6 LINE L1 7025 7127 -333 2 1269 2377 280 102 27 chr4 89682791 89683399 -65946721 + Lx8 LINE L1 5490 6163 -1310 2 1269 348 24 0 0 chr4 89683399 89683440 -65946680 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1269 2377 317 115 34 chr4 89683440 89684466 -65945654 + Lx8 LINE L1 6164 7253 -220 2 1269 441 0 0 0 chr4 89684591 89684640 -65945480 + (TAAAA)n Simple_repeat Simple_repeat 5 53 0 2 1269 195 204 0 0 chr4 89684728 89684777 -65945343 + A-rich Low_complexity Low_complexity 1 49 0 2 1269 573 284 48 9 chr4 89684915 89685125 -65944995 - L1M2 LINE L1 -1245 4898 4681 2 1269 1251 161 36 73 chr4 89685126 89685151 -65944969 - L1_Mm LINE L1 -495 5388 5364 2 1269 267 0 45 23 chr4 89685151 89685195 -65944925 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 1269 1251 181 40 66 chr4 89685195 89685480 -65944640 - L1_Mm LINE L1 -755 5385 5109 2 1269 248 239 27 82 chr4 89685614 89685687 -65944433 - ID4_ SINE ID -4 79 11 2 1269 454 111 0 0 chr4 89685777 89685849 -65944271 - L1_Mus2 LINE L1 0 6566 6495 2 1269 941 90 0 0 chr4 89685849 89685982 -65944138 + L1_Mus2 LINE L1 6387 6519 -47 2 1269 1533 166 0 4 chr4 89685973 89686239 -65943881 - L1_Mm LINE L1 -745 5138 4874 2 1269 3168 72 0 0 chr4 89686238 89686773 -65943347 + L1_Mus3 LINE L1 5428 5962 -604 2 1269 6065 58 4 3 chr4 89686776 89687540 -65942580 + L1_Mus1 LINE L1 5803 6567 0 2 1269 207 125 17 51 chr4 89687564 89687597 -65942523 + A-rich Low_complexity Low_complexity 2 33 0 2 1269 4517 97 32 6 chr4 89687597 89688283 -65941837 + L1_Mus3 LINE L1 5956 6638 0 2 1269 2618 252 21 27 chr4 89688312 89689116 -65941004 + Lx7 LINE L1 6794 7665 -31 2 1269 235 266 0 12 chr4 89689116 89689196 -65940924 - L1M2 LINE L1 -1916 4227 4149 2 1269 590 319 36 55 chr4 89689206 89689974 -65940146 + L1_Mur3 LINE L1 4910 5647 -653 2 1269 450 0 0 0 chr4 89689996 89690046 -65940074 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1269 627 221 90 90 chr4 89690095 89690239 -65939881 - B3 SINE B2 -43 152 9 2 1269 618 274 54 2 chr4 89690254 89690502 -65939618 + Lx9 LINE L1 5625 5905 -1739 2 1269 471 18 0 0 chr4 89690525 89690581 -65939539 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1269 2583 287 25 3 chr4 89690810 89691537 -65938583 + ERVL-B4-int LTR ERVL 2187 2929 -2785 2 1269 843 313 48 17 chr4 89691619 89691976 -65938144 + ERVL-B4-int LTR ERVL 3094 3461 -2296 2 1269 249 33 0 0 chr4 89692202 89692232 -65937888 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1269 468 0 0 0 chr4 89692232 89692283 -65937837 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1269 1143 288 45 54 chr4 89692283 89692745 -65937375 + ERVL-B4-int LTR ERVL 3913 4370 -1391 2 1269 1148 324 75 33 chr4 89692759 89693883 -65936237 + Lx5 LINE L1 4693 5864 -1186 2 1269 22 35 0 0 chr4 89693912 89693941 -65936179 + AT_rich Low_complexity Low_complexity 1 29 0 2 1269 7477 77 3 9 chr4 89695622 89696765 -65933355 - L1Md_F2 LINE L1 0 6582 5447 2 1269 8412 37 0 0 chr4 89696760 89698408 -65931712 - L1Md_T LINE L1 0 6582 4935 2 1269 35208 49 6 3 chr4 89698635 89704044 -65926076 + L1Md_T LINE L1 70 5589 -297 2 1269 8378 35 0 2 chr4 89704044 89705042 -65925078 + L1Md_T LINE L1 5590 6585 0 2 1269 5925 246 52 36 chr4 89705296 89706941 -65923179 + Lx6 LINE L1 5601 7547 -149 2 1269 534 103 0 0 chr4 89706941 89707019 -65923101 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 2 1269 909 237 142 3 chr4 89707019 89707165 -65922955 + Lx6 LINE L1 7548 7695 -1 2 1269 261 0 0 0 chr4 89707291 89707320 -65922800 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1269 252 0 0 0 chr4 89707322 89707350 -65922770 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1269 29 28 0 0 chr4 89707870 89707906 -65922214 + AT_rich Low_complexity Low_complexity 1 36 0 2 1269 1131 155 37 5 chr4 89708128 89708342 -65921778 + URR1B DNA MER1_type 3 223 -2 2 1269 1599 236 66 45 chr4 89708711 89709140 -65920980 + Lx7 LINE L1 6981 7576 -120 2 1269 672 13 0 0 chr4 89709140 89709217 -65920903 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1269 283 229 132 46 chr4 89709217 89709309 -65920811 + Lx7 LINE L1 7577 7679 -17 2 1269 17792 73 10 1 chr4 89710014 89713071 -65917049 - L1Md_F2 LINE L1 -12 6570 3486 2 1269 1253 87 0 0 chr4 89713067 89713240 -65916880 - L1_Mm LINE L1 -852 5031 4859 2 1269 45 19 0 0 chr4 89713565 89713617 -65916503 + AT_rich Low_complexity Low_complexity 1 52 0 2 1269 7437 127 67 11 chr4 89714223 89716285 -65913835 + Lx4A LINE L1 4466 6661 -397 2 1269 2880 120 26 30 chr4 89716279 89716743 -65913377 + Lx LINE L1 6193 6654 0 2 1269 2168 168 10 23 chr4 89716745 89717135 -65912985 + Lx4A LINE L1 6671 7055 -3 2 1269 725 283 202 15 chr4 89717228 89717566 -65912554 + Lx8 LINE L1 6944 7344 -129 2 1269 310 352 55 47 chr4 89718780 89718795 -65911325 + ID_B1 SINE B4 70 198 -26 2 1269 494 273 9 26 chr4 89718795 89718908 -65911212 + B1F SINE Alu 10 120 -29 2 1269 243 0 0 0 chr4 89719077 89719104 -65911016 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1269 521 147 0 10 chr4 89719671 89719767 -65910353 + GA-rich Low_complexity Low_complexity 1 95 0 2 1269 234 0 0 0 chr4 89720056 89720082 -65910038 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1269 330 154 21 79 chr4 89720281 89720471 -65909649 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 1269 233 152 59 29 chr4 89721766 89721834 -65908286 + L1M5 LINE L1 2949 3018 -3128 2 1269 30 27 0 0 chr4 89721886 89721923 -65908197 + AT_rich Low_complexity Low_complexity 1 37 0 3 1269 229 216 0 0 chr4 89722014 89722065 -65908055 + A-rich Low_complexity Low_complexity 2 52 0 3 1269 241 356 62 28 chr4 89722298 89722509 -65907611 - L1M7 LINE L1 -4605 1613 1396 3 1269 2076 96 3 7 chr4 89722509 89722802 -65907318 - ORR1A2 LTR MaLR -2 325 34 3 1269 760 92 49 7 chr4 89723042 89723185 -65906935 + (TTTCC)n Simple_repeat Simple_repeat 3 151 0 3 1269 741 84 9 0 chr4 89723187 89723294 -65906826 - B1_Mm SINE Alu 0 147 40 3 1269 288 275 24 24 chr4 89723299 89723381 -65906739 + Lx9 LINE L1 7072 7153 -491 3 1269 243 334 269 7 chr4 89723410 89723550 -65906570 + Lx8 LINE L1 7153 7329 -144 3 1269 663 299 71 37 chr4 89723825 89724179 -65905941 - L1MB7 LINE L1 -20 6164 5799 3 1269 1381 295 32 43 chr4 89724218 89724750 -65905370 + Lx8 LINE L1 6941 7466 -7 3 1269 237 83 0 0 chr4 89724757 89724793 -65905327 + (GGA)n Simple_repeat Simple_repeat 2 37 0 3 1269 24 32 0 0 chr4 89725793 89725824 -65904296 + AT_rich Low_complexity Low_complexity 1 31 0 3 1269 468 0 0 0 chr4 89725965 89726017 -65904103 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1269 3414 298 98 36 chr4 89726022 89727566 -65902554 - Lx7 LINE L1 -384 7312 5672 3 1269 23 54 0 0 chr4 89728074 89728111 -65902009 + AT_rich Low_complexity Low_complexity 1 37 0 3 1269 240 352 11 0 chr4 89729647 89729735 -65900385 + Tigger5 DNA MER2_type 2318 2406 0 3 1269 4278 256 47 46 chr4 89730052 89731389 -65898731 - Lx9 LINE L1 -1 7643 6306 3 1269 2696 191 29 0 chr4 89731485 89731976 -65898144 - RMER15 LTR ERVL 0 575 71 3 1269 351 282 45 18 chr4 89732102 89732214 -65897906 - PB1D10 SINE Alu -2 115 1 3 1269 1332 19 0 0 chr4 89732573 89732732 -65897388 + (TTCCC)n Simple_repeat Simple_repeat 4 162 0 3 1269 711 35 0 0 chr4 89732738 89732824 -65897296 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 3 1269 35 24 0 0 chr4 89732881 89732923 -65897197 + AT_rich Low_complexity Low_complexity 1 42 0 3 1269 4803 47 0 2 chr4 89732929 89733521 -65896599 - L1Md_F2 LINE L1 -11 6571 5981 3 1269 2834 54 0 0 chr4 89733521 89733871 -65896249 + L1Md_F2 LINE L1 5658 6007 -575 3 1269 3869 107 30 17 chr4 89733991 89734208 -65895912 - L1_Mm LINE L1 -302 5581 5373 3 1269 1079 83 14 0 chr4 89734208 89734353 -65895767 + B1_Mus1 SINE Alu 2 148 0 3 1269 3869 107 30 17 chr4 89734353 89734736 -65895384 - L1_Mm LINE L1 -511 5372 4973 3 1269 458 314 62 59 chr4 89734736 89734811 -65895309 + B4A SINE B4 3 73 -219 3 1269 252 0 0 0 chr4 89734811 89734839 -65895281 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1269 458 314 62 59 chr4 89734839 89735051 -65895069 + B4A SINE B4 74 291 -1 3 1269 658 253 97 5 chr4 89735363 89735558 -65894562 - B3 SINE B2 -2 214 2 3 1269 219 388 12 0 chr4 89736112 89736192 -65893928 + B4A SINE B4 3 83 -209 3 1269 384 301 9 72 chr4 89736180 89736291 -65893829 + ID_B1 SINE B4 98 201 -23 3 1269 792 32 0 0 chr4 89736321 89736416 -65893704 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 3 1269 536 306 34 38 chr4 89737097 89737362 -65892758 - Lx8 LINE L1 -7 7466 7203 3 1269 274 386 37 67 chr4 89738359 89738523 -65891597 + B4 SINE B4 21 179 -113 3 1269 26 50 0 0 chr4 89738882 89738922 -65891198 + AT_rich Low_complexity Low_complexity 1 40 0 3 1269 426 288 36 0 chr4 89738951 89739062 -65891058 - RSINE1 SINE B4 -36 129 15 3 1269 828 342 76 17 chr4 89740204 89740745 -65889375 - Lx9 LINE L1 -6 7638 7066 3 1269 641 226 95 53 chr4 89740755 89741009 -65889111 - Lx6 LINE L1 -584 6876 6456 3 1269 1559 166 173 15 chr4 89741020 89741350 -65888770 + Lx4B LINE L1 6663 7044 -14 3 1269 396 0 0 0 chr4 89741350 89741394 -65888726 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 3 1269 3872 163 48 7 chr4 89741479 89741643 -65888477 + Lx4B LINE L1 5115 5288 -589 3 1269 2499 81 19 16 chr4 89741643 89742007 -65888113 + L1Md_F2 LINE L1 6218 6582 0 3 1269 3872 172 40 7 chr4 89742007 89742928 -65887192 + Lx4B LINE L1 5289 6242 -816 3 1269 775 275 80 17 chr4 89742853 89743223 -65886897 - Lx6 LINE L1 -623 6427 6017 3 1269 717 251 23 53 chr4 89743262 89743680 -65886440 + Lx5 LINE L1 5838 5974 -1076 3 1269 182 312 37 12 chr4 89744217 89744298 -65885822 + L3 LINE CR1 58 140 -4349 3 1269 303 317 93 51 chr4 89745437 89745673 -65884447 - L1MC4 LINE L1 -495 7547 7302 3 1269 1586 240 14 14 chr4 89745812 89746180 -65883940 + Lx9 LINE L1 6385 6752 -892 3 1269 2288 201 40 53 chr4 89746182 89746270 -65883850 + Lx9 LINE L1 6722 6786 -858 3 1269 680 76 233 8 chr4 89746270 89746390 -65883730 - B1_Mus1 SINE Alu -1 147 1 3 1269 2288 201 40 53 chr4 89746390 89746851 -65883269 + Lx9 LINE L1 6787 7264 -380 3 1269 1093 76 21 0 chr4 89747063 89747207 -65882913 + B1_Mus2 SINE Alu 1 147 0 3 1269 419 105 0 34 chr4 89747207 89747296 -65882824 + (A)n Simple_repeat Simple_repeat 1 86 0 3 1269 550 290 48 0 chr4 89747503 89747627 -65882493 + RSINE1 SINE B4 3 132 -33 3 1269 1151 109 6 0 chr4 89747658 89747823 -65882297 + L1_Mus4 LINE L1 6263 6428 -208 3 1269 300 53 0 0 chr4 89747823 89747861 -65882259 + (CAGT)n Simple_repeat Simple_repeat 1 38 0 3 1269 7056 90 25 11 chr4 89748076 89749069 -65881051 - L1_Mus3 LINE L1 -3 6635 5629 3 1269 1385 146 0 0 chr4 89749067 89749272 -65880848 + L1_Mus3 LINE L1 5431 5635 -248 3 1269 23 0 0 0 chr4 89751431 89751454 -65878666 + AT_rich Low_complexity Low_complexity 1 23 0 3 1269 411 289 33 0 chr4 89754498 89754619 -65875501 + RMER15 LTR ERVL 346 470 -105 3 1269 1297 235 6 67 chr4 89755077 89755433 -65874687 + Lx6 LINE L1 7115 7448 -12 3 1269 327 49 0 0 chr4 89755864 89755905 -65874215 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 3 1269 4433 103 17 3 chr4 89756887 89757537 -65872583 + Lx LINE L1 5989 6647 -7 3 1269 898 241 283 40 chr4 89757564 89757902 -65872218 + MTD LTR MaLR 3 374 -5 3 1269 31 58 0 0 chr4 89758035 89758087 -65872033 + AT_rich Low_complexity Low_complexity 1 52 0 3 1269 31 26 0 0 chr4 89758244 89758282 -65871838 + AT_rich Low_complexity Low_complexity 1 38 0 3 1269 373 306 170 20 chr4 89759630 89759877 -65870243 - RMER5 LTR ERV1 0 534 251 3 1269 231 167 0 0 chr4 89760065 89760107 -65870013 + T-rich Low_complexity Low_complexity 3 44 0 3 1269 551 345 28 24 chr4 89761665 89761956 -65868164 + Lx8 LINE L1 6554 6845 -628 3 1269 516 124 0 0 chr4 89762025 89762130 -65867990 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1269 700 269 55 6 chr4 89762840 89763165 -65866955 - L1MC3 LINE L1 0 7785 7445 3 1269 2119 89 13 50 chr4 89763196 89763550 -65866570 - L1_Mus3 LINE L1 0 6638 6305 3 1269 3896 96 8 4 chr4 89763556 89764223 -65865897 - L1_Mus3 LINE L1 -508 6130 5458 3 1269 736 260 408 8 chr4 89764397 89764642 -65865478 - MTD LTR MaLR 0 419 77 3 1269 1185 108 0 0 chr4 89764645 89764821 -65865299 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 3 1269 6364 139 49 7 chr4 89764825 89765866 -65864254 - Lx2 LINE L1 -60 6937 5853 3 1269 291 181 32 24 chr4 89765866 89765940 -65864180 - MTD LTR MaLR -332 75 6 3 1269 867 196 24 33 chr4 89766058 89766269 -65863851 - Lx9 LINE L1 -1693 5951 5743 3 1269 323 273 119 70 chr4 89766499 89766684 -65863436 - L1MC3 LINE L1 -938 7057 6864 3 1269 345 257 72 11 chr4 89766847 89767028 -65863092 - L1MCa LINE L1 -5041 1710 1519 3 1269 1094 85 0 0 chr4 89767035 89767176 -65862944 + B1_Mus1 SINE Alu 2 142 -6 3 1269 346 15 91 0 chr4 89767177 89767243 -65862877 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 3 1269 351 0 0 0 chr4 89767431 89767470 -65862650 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1269 249 33 0 0 chr4 89767470 89767499 -65862621 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1269 227 333 29 12 chr4 89767634 89767804 -65862316 - L1MCa LINE L1 -4848 1197 1025 3 1269 335 363 106 80 chr4 89767855 89768720 -65861400 - L1MCa LINE L1 -5100 945 58 3 1269 1170 68 0 0 chr4 89768869 89769015 -65861105 + B1_Mm SINE Alu 2 147 0 3 1269 861 312 222 4 chr4 89769643 89770151 -65859969 - Lx8 LINE L1 -13 7460 6842 3 1269 632 275 6 24 chr4 89770176 89770340 -65859780 + MTE2b LTR MaLR 219 379 0 3 1269 198 0 0 0 chr4 89770406 89770428 -65859692 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1269 201 39 0 0 chr4 89770785 89770811 -65859309 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3 1269 6354 176 50 42 chr4 89770822 89772549 -65857571 - Lx4B LINE L1 -44 7014 5283 3 1269 7724 70 1 1 chr4 89772571 89773608 -65856512 - L1_Mus1 LINE L1 0 6567 5528 3 1269 266 89 0 43 chr4 89773590 89773637 -65856483 - L1_Mur3 LINE L1 -572 5308 5264 3 1269 1265 69 6 0 chr4 89777308 89777482 -65852638 + L1_Mus2 LINE L1 6392 6566 0 3 1269 38864 35 0 0 chr4 89777585 89782998 -65847122 - L1Md_T LINE L1 0 6582 1170 3 1269 5442 156 25 31 chr4 89783004 89784089 -65846031 - L1Md_T LINE L1 -5411 1205 128 3 1269 207 0 0 0 chr4 89784170 89784193 -65845927 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 158 301 321 80 6 chr4 89784261 89784424 -65845696 - L2a LINE L2 -3 3423 3249 3 1270 1124 192 4 26 chr4 89784563 89784793 -65845327 - Lx3B LINE L1 0 6973 6749 3 1270 234 0 0 0 chr4 89784793 89784819 -65845301 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1270 562 243 64 0 chr4 89785049 89785189 -65844931 - B1_Mur4 SINE Alu 0 150 2 3 1270 6799 56 2 18 chr4 89785204 89786090 -65844030 - L1Md_F2 LINE L1 0 6582 5711 3 1270 770 150 0 16 chr4 89786081 89786203 -65843917 - Lx3B LINE L1 -218 6755 6636 3 1270 1173 112 6 2 chr4 89786198 89786385 -65843735 + Lx3B LINE L1 5801 5985 -582 3 1270 766 291 123 21 chr4 89786576 89787105 -65843015 + L1MC LINE L1 4722 5304 -842 3 1270 1576 185 7 30 chr4 89787130 89787426 -65842694 + Lx4A LINE L1 6770 7058 0 3 1270 429 258 178 45 chr4 89787433 89787500 -65842620 + L1MC1 LINE L1 5295 5370 -2625 3 1270 480 118 12 0 chr4 89787500 89787585 -65842535 + Lx LINE L1 6563 6648 -6 3 1270 449 258 178 45 chr4 89787585 89787761 -65842359 + L1MC1 LINE L1 5371 5588 -2407 3 1270 2175 30 8 4 chr4 89787761 89788028 -65842092 - L1Md_F3 LINE L1 0 6584 6317 3 1270 449 286 55 32 chr4 89788028 89788160 -65841960 + L1MC1 LINE L1 5589 5721 -612 3 1270 402 268 105 19 chr4 89788213 89788422 -65841698 + Lx9 LINE L1 7391 7617 -27 3 1270 595 304 19 15 chr4 89788453 89788720 -65841400 + L1MC1 LINE L1 5762 6029 -304 3 1270 277 113 31 31 chr4 89789280 89789344 -65840776 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 3 1270 1847 187 67 5 chr4 89789767 89790138 -65839982 - RMER6B LTR ERVK -67 394 1 3 1270 3830 139 25 8 chr4 89790144 89790774 -65839346 - MYSERV6-int LTR ERVK -1198 7761 7121 4 1270 459 0 0 0 chr4 89790774 89790825 -65839295 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1270 271 246 75 55 chr4 89790879 89791025 -65839095 - RLTR15 LTR ERVK -22 337 189 4 1270 668 275 155 53 chr4 89791537 89792530 -65837590 + L1MD2 LINE L1 4760 5837 -522 4 1270 1581 160 26 67 chr4 89792605 89792946 -65837174 + ORR1A4 LTR MaLR 3 329 0 4 1270 21 0 0 0 chr4 89794631 89794652 -65835468 + AT_rich Low_complexity Low_complexity 1 21 0 4 1270 459 0 0 0 chr4 89794682 89794733 -65835387 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1270 315 290 53 11 chr4 89794918 89795012 -65835108 + U6 snRNA snRNA 2 99 -8 4 1270 3834 242 67 60 chr4 89795017 89796561 -65833559 + L1_Mur3 LINE L1 1732 3285 -2595 4 1270 490 331 82 7 chr4 89796566 89796712 -65833408 + B3 SINE B2 1 157 -59 4 1270 500 0 17 0 chr4 89796721 89796781 -65833339 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1270 602 229 110 5 chr4 89796791 89796883 -65833237 + L1_Mur3 LINE L1 3275 3384 -2496 4 1270 351 0 0 0 chr4 89796883 89796922 -65833198 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1270 602 229 110 5 chr4 89796922 89797048 -65833072 + L1_Mur3 LINE L1 3385 3515 -2365 4 1270 24244 25 0 1 chr4 89797049 89800604 -65829516 - L1Md_T LINE L1 0 6582 3032 4 1270 561 99 0 0 chr4 89801041 89801122 -65828998 + (GA)n Simple_repeat Simple_repeat 1 81 0 4 1270 519 364 34 9 chr4 89801292 89801525 -65828595 - MLT1D LTR MaLR -15 490 252 4 1270 205 233 13 27 chr4 89801790 89801865 -65828255 + (CAGAGA)n Simple_repeat Simple_repeat 6 79 0 4 1270 248 316 47 89 chr4 89802094 89802285 -65827835 + MTEa LTR MaLR 197 379 0 4 1270 37 0 0 0 chr4 89803193 89803230 -65826890 + AT_rich Low_complexity Low_complexity 1 37 0 4 1270 1468 241 44 44 chr4 89803745 89804153 -65825967 + Lx9 LINE L1 6429 6836 -808 4 1270 698 368 10 3 chr4 89804219 89804508 -65825612 - Lx7 LINE L1 -689 6784 6494 4 1270 935 270 75 26 chr4 89804626 89805108 -65825012 - Lx7 LINE L1 -1512 5961 5468 4 1270 560 224 52 19 chr4 89805150 89805305 -65824815 - Lx7 LINE L1 -855 5025 4866 4 1270 1303 277 75 16 chr4 89805995 89806486 -65823634 - L1_Rod LINE L1 -2790 3057 2538 4 1270 761 283 48 21 chr4 89806524 89806860 -65823260 - L1_Rod LINE L1 -3512 2335 1991 4 1270 244 242 75 15 chr4 89806972 89807039 -65823081 - MIRc SINE MIR -127 141 71 4 1270 315 0 0 0 chr4 89807078 89807113 -65823007 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1270 189 0 0 0 chr4 89807147 89807168 -65822952 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1270 328 286 52 73 chr4 89807568 89807760 -65822360 + RLTR14 LTR ERV1 154 341 -41 4 1270 605 252 61 25 chr4 89807824 89808023 -65822097 + Lx9 LINE L1 5680 5921 -1723 4 1270 276 154 0 0 chr4 89808052 89808104 -65822016 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1270 1084 97 0 0 chr4 89808271 89808416 -65821704 + B1_Mus1 SINE Alu 2 146 -2 4 1270 594 0 0 0 chr4 89808438 89808504 -65821616 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 4 1270 220 143 36 0 chr4 89808671 89808727 -65821393 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1270 2111 323 41 31 chr4 89808771 89809303 -65820817 + Lx9 LINE L1 6476 7015 -629 4 1270 1167 84 0 6 chr4 89809303 89809471 -65820649 + L1Md_F2 LINE L1 6404 6570 -12 4 1270 2111 323 41 31 chr4 89809471 89810013 -65820107 + Lx9 LINE L1 7016 7561 -83 4 1270 22 35 0 0 chr4 89810398 89810427 -65819693 + AT_rich Low_complexity Low_complexity 1 29 0 4 1270 708 284 13 0 chr4 89810432 89810587 -65819533 - RSINE1 SINE B4 0 165 9 4 1270 22 35 0 0 chr4 89811197 89811226 -65818894 + AT_rich Low_complexity Low_complexity 1 29 0 4 1270 409 325 37 8 chr4 89811926 89812248 -65817872 + L1MDa LINE L1 1022 1359 -5181 4 1270 313 354 105 29 chr4 89812289 89812603 -65817517 + L1MDa LINE L1 1438 1775 -4858 4 1270 589 98 29 0 chr4 89812618 89812720 -65817400 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 4 1270 405 313 0 57 chr4 89812732 89812854 -65817266 - Lx8 LINE L1 -153 7320 7206 4 1270 755 344 69 21 chr4 89812911 89813438 -65816682 - Lx8 LINE L1 -453 7020 6424 4 1270 1218 100 0 0 chr4 89813480 89813660 -65816460 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1270 786 22 0 0 chr4 89813660 89813752 -65816368 + (TTTC)n Simple_repeat Simple_repeat 4 95 0 4 1270 391 289 164 12 chr4 89813773 89813935 -65816185 - B3 SINE B2 0 216 30 4 1270 260 258 60 15 chr4 89813991 89814058 -65816062 - B3A SINE B2 -43 155 86 4 1270 40 79 0 0 chr4 89814325 89814414 -65815706 + AT_rich Low_complexity Low_complexity 1 89 0 4 1270 1701 294 19 37 chr4 89814663 89815203 -65814917 - Lx5 LINE L1 -4 7046 6517 4 1270 681 34 44 11 chr4 89815203 89815293 -65814827 - MTB LTR MaLR 0 400 308 4 1270 3088 51 23 3 chr4 89815295 89815687 -65814433 + MTB LTR MaLR 1 400 0 4 1270 2061 285 49 23 chr4 89815687 89816433 -65813687 - Lx5 LINE L1 -623 6837 5830 4 1270 1832 238 100 2 chr4 89816432 89816934 -65813186 + L1_Mur3 LINE L1 5137 5687 -193 4 1270 5969 78 4 93 chr4 89816934 89817900 -65812220 - RLTR13B1 LTR ERVK 0 893 14 4 1270 576 164 27 0 chr4 89817900 89818010 -65812110 + L1_Mur2 LINE L1 5680 5792 -85 4 1270 34314 70 10 7 chr4 89818013 89823133 -65806987 + L1Md_F2 LINE L1 428 5589 -297 4 1270 7619 63 11 2 chr4 89823133 89824120 -65806000 + L1Md_F2 LINE L1 5590 6585 0 4 1270 323 70 0 0 chr4 89824120 89824163 -65805957 + Lx5 LINE L1 5787 5829 -1221 4 1270 4222 241 42 42 chr4 89824177 89825262 -65804858 - Lx7 LINE L1 -437 7259 6176 4 1270 252 179 39 0 chr4 89825263 89825341 -65804779 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1270 1205 54 0 0 chr4 89825446 89825594 -65804526 + B1_Mus1 SINE Alu 1 148 0 4 1270 834 132 0 0 chr4 89825594 89825730 -65804390 + (GAAA)n Simple_repeat Simple_repeat 3 138 0 4 1270 2383 73 6 0 chr4 89826177 89826492 -65803628 + ORR1A1 LTR MaLR 26 342 -4 4 1270 212 333 112 58 chr4 89826592 89826780 -65803340 - L4 LINE RTE -449 1580 1383 4 1270 507 17 0 0 chr4 89827710 89827770 -65802350 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1270 365 238 8 14 chr4 89827915 89828012 -65802108 + Lx9 LINE L1 5553 5666 -214 4 1270 349 284 72 166 chr4 89828018 89828474 -65801646 + RMER2 LTR ERV1 1 540 -27 4 1270 1907 303 133 82 chr4 89828489 89830168 -65799952 + Lx9 LINE L1 5673 7438 -206 4 1270 729 284 14 5 chr4 89830518 89830727 -65799393 + B3 SINE B2 2 212 -4 4 1270 4891 119 49 3 chr4 89831396 89832173 -65797947 + Lx3C LINE L1 6162 6974 -2 4 1270 212 0 36 0 chr4 89832514 89832542 -65797578 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1270 10899 65 15 5 chr4 89833073 89835171 -65794949 - L1Md_F2 LINE L1 -2 6580 4464 4 1270 13803 72 2 1 chr4 89835161 89837007 -65793113 + L1Md_F2 LINE L1 2608 4456 -1427 4 1270 415 278 94 17 chr4 89838416 89838533 -65791587 - RSINE1 SINE B4 -34 131 6 4 1270 450 258 19 30 chr4 89838568 89838684 -65791436 - PB1D10 SINE Alu -21 129 9 4 1270 458 285 20 14 chr4 89838798 89838944 -65791176 - B1F SINE Alu -2 147 1 4 1270 189 358 63 0 chr4 89838997 89839092 -65791028 + L2a LINE L2 3319 3419 -7 4 1270 564 313 47 42 chr4 89839521 89839711 -65790409 + MLT1A1 LTR MaLR 9 199 -209 4 1270 834 339 126 5 chr4 89839927 89840507 -65789613 + MLT-int LTR MaLR 137 787 -948 4 1270 324 200 114 79 chr4 89840678 89840792 -65789328 + Charlie12 DNA MER1_type 29 146 -2727 4 1270 365 247 24 0 chr4 89840842 89840927 -65789193 - RMER30 DNA MER1_type -115 87 1 4 1270 372 269 49 63 chr4 89841051 89841194 -65788926 + MLT-int LTR MaLR 1485 1625 -110 4 1270 2538 85 58 43 chr4 89841195 89841612 -65788508 - Lx3_Mus LINE L1 -803 6206 5784 4 1270 531 0 0 0 chr4 89841612 89841671 -65788449 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1270 1530 203 47 10 chr4 89841671 89841970 -65788150 - ORR1B2 LTR MaLR -57 310 1 4 1270 606 131 0 0 chr4 89842046 89842145 -65787975 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 4 1270 12460 101 7 4 chr4 89842170 89844601 -65785519 - L1_Mus3 LINE L1 0 6638 4202 4 1270 2236 130 11 38 chr4 89844601 89844968 -65785152 - IAPEY2_LTR LTR ERVK 0 357 1 4 1270 12460 117 4 6 chr4 89844968 89845158 -65784962 - L1_Mus3 LINE L1 -1682 4201 4012 4 1270 29520 64 0 1 chr4 89845160 89849106 -65781014 + L1Md_A LINE L1 1123 5064 -819 4 1270 12336 100 12 6 chr4 89849105 89851031 -65779089 - MusHAL1 LINE L1 -768 1944 6 4 1270 2252 213 10 22 chr4 89851028 89851522 -65778598 - L1VL1 LINE L1 -5741 681 194 4 1270 1523 92 5 0 chr4 89851524 89851731 -65778389 - L1_Mur1 LINE L1 -90 5796 5589 4 1270 5278 98 35 9 chr4 89851731 89852501 -65777619 + Lx3_Mus LINE L1 6219 7008 -1 4 1270 1264 310 41 15 chr4 89852617 89853007 -65777113 + MLT1A1 LTR MaLR 6 405 -3 4 1270 219 69 0 0 chr4 89853301 89853330 -65776790 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1270 227 295 0 16 chr4 89855945 89856007 -65774113 + MIRc SINE MIR 83 143 -125 4 1270 526 294 130 40 chr4 89856508 89857122 -65772998 - L1M4 LINE L1 -1226 5418 4748 4 1270 279 0 0 0 chr4 89857122 89857153 -65772967 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1270 526 294 130 40 chr4 89857153 89857283 -65772837 - L1M4 LINE L1 -1897 4747 4607 4 1270 387 0 0 0 chr4 89857395 89857438 -65772682 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1270 428 234 132 2 chr4 89857621 89857857 -65772263 - L1M4 LINE L1 -5038 1608 1342 4 1270 29 60 0 0 chr4 89857926 89857976 -65772144 + AT_rich Low_complexity Low_complexity 1 50 0 4 1270 37 52 0 0 chr4 89858333 89858391 -65771729 + AT_rich Low_complexity Low_complexity 1 58 0 4 1270 227 229 16 16 chr4 89858911 89858973 -65771147 - MLT1J2 LTR MaLR -22 426 365 4 1270 305 308 22 0 chr4 89859285 89859376 -65770744 - L1MEe LINE L1 -4634 220 128 4 1270 1012 117 7 14 chr4 89859494 89859780 -65770340 + (TCTA)n Simple_repeat Simple_repeat 1 284 0 4 1270 21 36 0 0 chr4 89859906 89859934 -65770186 + AT_rich Low_complexity Low_complexity 1 28 0 4 1270 316 243 49 92 chr4 89860431 89860594 -65769526 + L1MA9 LINE L1 6044 6199 -113 4 1270 29 60 0 0 chr4 89860779 89860829 -65769291 + AT_rich Low_complexity Low_complexity 1 50 0 4 1270 34223 65 5 5 chr4 89861042 89865116 -65765004 - L1Md_F2 LINE L1 -3 6579 2513 4 1270 5010 59 3 0 chr4 89865116 89865758 -65764362 - L1Md_F2 LINE L1 -13 6569 5926 4 1270 34223 80 5 8 chr4 89865758 89867771 -65762349 - L1Md_F2 LINE L1 -3371 2512 503 4 1270 797 254 101 3 chr4 89867879 89868207 -65761913 - L1_Mur3 LINE L1 -3706 2174 1815 4 1270 420 349 6 0 chr4 89868282 89868457 -65761663 + Lx9 LINE L1 7247 7422 -222 5 1270 357 330 87 15 chr4 89868488 89868733 -65761387 + MTD LTR MaLR 9 301 -120 5 1270 441 262 54 36 chr4 89868809 89868975 -65761145 + Lx7 LINE L1 2191 2359 -3521 5 1270 1077 112 94 30 chr4 89868976 89869179 -65760941 - RMER3D-int LTR ERVK -625 2217 2002 5 1270 3356 158 116 14 chr4 89869179 89869807 -65760313 + RLTR17 LTR ERVK 1 692 0 5 1270 825 220 147 0 chr4 89869828 89870087 -65760033 + Lx7 LINE L1 2398 2694 -3186 5 1270 1357 134 186 9 chr4 89870130 89870462 -65759658 - RLTR9D LTR ERVK -12 391 1 5 1270 4188 254 62 45 chr4 89870463 89873582 -65756538 + Lx7 LINE L1 2725 6369 -1327 5 1270 23 68 0 0 chr4 89873588 89873632 -65756488 + AT_rich Low_complexity Low_complexity 1 44 0 5 1270 227 211 77 26 chr4 89873686 89873764 -65756356 + Lx7 LINE L1 7615 7696 0 5 1270 6919 90 15 2 chr4 89875384 89876345 -65753775 + L1_Mus4 LINE L1 5646 6618 -18 5 1270 24 0 0 0 chr4 89876361 89876385 -65753735 + AT_rich Low_complexity Low_complexity 1 24 0 5 1270 286 277 65 65 chr4 89877681 89877789 -65752331 + PB1D10 SINE Alu 1 108 -9 5 1270 249 192 58 0 chr4 89877807 89877859 -65752261 + ID_B1 SINE B4 168 222 -2 5 1270 257 345 0 65 chr4 89879219 89879343 -65750777 + polypyrimidine Low_complexity Low_complexity 1 116 0 5 1270 213 77 18 55 chr4 89879374 89879429 -65750691 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1270 240 35 0 0 chr4 89879583 89879612 -65750508 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1270 191 361 35 35 chr4 89879635 89879721 -65750399 - MIR SINE MIR -79 129 44 5 1270 1135 62 7 0 chr4 89880384 89880528 -65749592 + B1_Mus1 SINE Alu 3 147 -1 5 1270 237 108 0 0 chr4 89880563 89880600 -65749520 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1270 1100 89 0 0 chr4 89880647 89880793 -65749327 + B1_Mm SINE Alu 2 147 0 5 1270 8122 17 0 0 chr4 89880793 89881725 -65748395 + L1Md_T LINE L1 4655 5586 -297 5 1270 8049 53 0 0 chr4 89881725 89882721 -65747399 + L1Md_T LINE L1 5587 6582 0 5 1270 318 132 0 0 chr4 89882741 89882794 -65747326 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 5 1270 192 77 0 0 chr4 89882803 89882829 -65747291 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1270 1506 22 0 0 chr4 89883508 89883686 -65746434 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1270 225 0 0 0 chr4 89883686 89883711 -65746409 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 5 1270 233 338 48 28 chr4 89883711 89883793 -65746327 - L1MDa LINE L1 -4559 2074 1988 5 1270 3392 81 2 11 chr4 89883793 89884253 -65745867 - L1Md_F2 LINE L1 -13 6569 6114 5 1270 4656 114 2 0 chr4 89884253 89885063 -65745057 - L1VL1 LINE L1 -1972 1726 915 5 1270 288 274 10 10 chr4 89885095 89885191 -65744929 + MT2B LTR ERVL 1 96 -437 5 1270 892 253 47 72 chr4 89885397 89885764 -65744356 + MT2B LTR ERVL 180 573 -28 5 1270 749 120 13 45 chr4 89885767 89885924 -65744196 - Lx2 LINE L1 -2 6995 6844 5 1270 7378 170 16 38 chr4 89885952 89887490 -65742630 - L1_Mur1 LINE L1 -1767 4119 2616 5 1270 466 309 15 7 chr4 89888380 89888517 -65741603 + MER21B LTR ERV1 209 346 -517 5 1270 180 152 0 0 chr4 89888643 89888676 -65741444 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 5 1270 180 217 0 0 chr4 89888700 89888746 -65741374 + CT-rich Low_complexity Low_complexity 3 48 0 5 1270 340 333 8 8 chr4 89888819 89888952 -65741168 - Lx6 LINE L1 -1026 6434 6302 5 1270 2870 203 83 20 chr4 89889036 89889640 -65740480 - RLTR26 LTR ERVK 0 642 1 5 1270 216 97 0 0 chr4 89892379 89892410 -65737710 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 5 1270 1242 153 42 75 chr4 89893217 89893550 -65736570 + RLTRETN_Mm LTR ERVK 1 322 0 5 1270 5488 42 0 4 chr4 89893550 89894242 -65735878 + ETnERV-int LTR ERVK 1 689 -2625 5 1270 14420 142 27 29 chr4 89894233 89897169 -65732951 + ETnERV2-int LTR ERVK 3219 7299 -107 5 1270 1164 193 33 72 chr4 89897169 89897504 -65732616 + RLTRETN_Mm LTR ERVK 1 322 0 5 1270 594 250 14 35 chr4 89898696 89898837 -65731283 - B1_Mur2 SINE Alu 0 149 12 5 1270 587 170 52 46 chr4 89898837 89899070 -65731050 + RMER17C LTR ERVK 1 392 -18 5 1270 386 269 239 8 chr4 89899205 89899585 -65730535 + L1MD LINE L1 5014 5479 -763 5 1270 929 265 124 14 chr4 89899666 89899949 -65730171 + MTD LTR MaLR 43 356 -63 5 1270 368 344 16 0 chr4 89899965 89900090 -65730030 + L1ME2 LINE L1 6037 6163 -1 5 1270 325 265 102 7 chr4 89900117 89900254 -65729866 + Arthur1 DNA Tip100 3775 3924 -23 5 1270 21 57 0 0 chr4 89900411 89900446 -65729674 + AT_rich Low_complexity Low_complexity 1 35 0 5 1270 2527 163 98 62 chr4 89901024 89901553 -65728567 + RMER15 LTR ERVL 11 558 -17 5 1270 547 341 100 52 chr4 89901555 89901824 -65728296 + B4 SINE B4 11 292 0 5 1270 2825 168 35 17 chr4 89902026 89902344 -65727776 - RLTR17 LTR ERVK -70 622 297 5 1270 2018 128 91 19 chr4 89902344 89902718 -65727402 + RLTR9D LTR ERVK 1 401 -2 5 1270 2825 168 35 17 chr4 89902718 89902915 -65727205 - RLTR17 LTR ERVK -396 296 99 5 1270 24 91 0 0 chr4 89902951 89903017 -65727103 + AT_rich Low_complexity Low_complexity 1 66 0 5 1270 198 357 20 30 chr4 89903084 89903185 -65726935 + L2a LINE L2 3327 3426 0 5 1270 336 304 156 29 chr4 89903421 89903594 -65726526 - MLT1I LTR MaLR -191 220 26 5 1270 4447 118 63 11 chr4 89903782 89904493 -65725627 - Lx LINE L1 -7 6647 5900 5 1270 808 170 156 24 chr4 89904876 89905081 -65725039 - MTD LTR MaLR -187 232 1 5 1270 1810 151 77 24 chr4 89906159 89906499 -65723621 + RLTR9B2 LTR ERVK 63 420 0 5 1270 1644 245 49 9 chr4 89906499 89906924 -65723196 - Lx5 LINE L1 -277 6773 6332 5 1270 1947 159 45 25 chr4 89906920 89907158 -65722962 + L1_Mur2 LINE L1 4087 4334 -1543 5 1270 1065 34 20 0 chr4 89907158 89907304 -65722816 + (TCTA)n Simple_repeat Simple_repeat 4 152 0 5 1270 1947 159 45 25 chr4 89907304 89907465 -65722655 + L1_Mur2 LINE L1 4335 4494 -1383 5 1270 7409 125 40 19 chr4 89907463 89908753 -65721367 + Lx2 LINE L1 5680 6995 -2 5 1270 207 0 0 0 chr4 89909468 89909491 -65720629 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1270 880 344 60 28 chr4 89909510 89910156 -65719964 + ERVL-B4-int LTR ERVL 3520 4186 -1528 5 1270 192 77 0 0 chr4 89910638 89910664 -65719456 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1270 252 298 68 34 chr4 89910690 89910836 -65719284 + ERVL-B4-int LTR ERVL 4263 4413 -1072 5 1270 392 300 50 11 chr4 89910874 89911056 -65719064 + ERVL-B4-int LTR ERVL 4516 4704 -1053 5 1270 278 253 69 0 chr4 89911045 89911132 -65718988 + ERVL-B4-int LTR ERVL 5111 5203 -554 5 1270 405 269 39 10 chr4 89911235 89911438 -65718682 + ERVL-B4-int LTR ERVL 5396 5604 -153 5 1270 508 284 2 10 chr4 89911588 89911733 -65718387 + MLT2B2 LTR ERVL 10 152 -404 5 1270 1139 243 165 29 chr4 89911808 89912047 -65718073 - RLTR21 LTR ERVK -42 1530 1291 5 1270 507 78 0 0 chr4 89912047 89912124 -65717996 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1270 1139 243 165 29 chr4 89912124 89912266 -65717854 - RLTR21 LTR ERVK -282 1290 1098 5 1270 1044 212 13 20 chr4 89912244 89912494 -65717626 - RMER12B LTR ERVK -180 1224 1037 5 1270 243 0 0 0 chr4 89912495 89912522 -65717598 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1270 779 58 0 0 chr4 89912522 89912619 -65717501 - B1_Mus2 SINE Alu -8 139 43 5 1270 228 178 112 56 chr4 89912556 89912663 -65717457 - RLTR25B LTR ERVK -519 509 397 5 1270 228 99 15 96 chr4 89912663 89912934 -65717186 + CT-rich Low_complexity Low_complexity 1 248 0 5 1270 380 53 0 35 chr4 89912938 89912996 -65717124 - B1_Mus1 SINE Alu -88 60 5 5 1270 2070 101 27 46 chr4 89912994 89913366 -65716754 - RMER12B LTR ERVK -350 1054 690 5 1270 1847 278 94 119 chr4 89913366 89914722 -65715398 - RMER12 LTR ERVK 0 1322 1 5 158 2643 200 92 78 chr4 89914723 89915407 -65714713 - RMER12B LTR ERVK -710 694 1 5 1271 539 347 66 38 chr4 89915435 89915784 -65714336 + MLT2B2 LTR ERVL 197 538 -24 5 1271 201 39 0 0 chr4 89916141 89916167 -65713953 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 5 1271 410 0 0 20 chr4 89916280 89916331 -65713789 + (TTC)n Simple_repeat Simple_repeat 2 51 0 5 1271 14943 127 23 27 chr4 89916349 89917625 -65712495 - Lx3B LINE L1 -3 6970 5687 5 1271 423 0 0 0 chr4 89917625 89917672 -65712448 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1271 921 138 7 0 chr4 89917674 89917812 -65712308 - B1_Mus2 SINE Alu -7 140 2 5 1271 448 223 0 111 chr4 89917711 89917837 -65712283 - MT2B LTR ERVL -344 257 146 5 1271 14943 124 30 72 chr4 89917812 89920512 -65709608 - Lx3B LINE L1 -200 5684 2977 5 1271 1069 313 106 62 chr4 89920565 89920874 -65709246 + Lx8 LINE L1 6619 6920 -553 5 1271 8009 35 1 0 chr4 89920874 89921802 -65708318 + RLTR13B3 LTR ERVK 1 929 0 5 1271 1069 313 106 62 chr4 89921802 89922201 -65707919 + Lx8 LINE L1 6921 7358 -115 5 1271 289 304 89 0 chr4 89922338 89922473 -65707647 - L1MA5A LINE L1 -413 5884 5738 5 1271 4880 208 75 79 chr4 89922482 89922972 -65707148 + RMER12B LTR ERVK 2 529 -875 5 1271 1501 94 44 9 chr4 89922972 89923198 -65706922 + L1Md_F2 LINE L1 6337 6570 -12 5 1271 4880 208 75 79 chr4 89923198 89923821 -65706299 + RMER12B LTR ERVK 530 1133 -271 5 1271 5924 72 82 16 chr4 89923821 89924658 -65705462 - RLTR13B1 LTR ERVK 0 893 1 5 1271 4880 208 75 79 chr4 89924658 89924952 -65705168 + RMER12B LTR ERVK 1134 1404 0 5 1271 426 221 75 92 chr4 89925134 89925308 -65704812 - Lx6 LINE L1 -40 7420 7250 5 1271 2658 158 20 20 chr4 89925310 89925608 -65704512 + ETnERV2-int LTR ERVK 5697 6000 -1406 5 1271 243 0 0 0 chr4 89925608 89925635 -65704485 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1271 2658 158 20 20 chr4 89925635 89925845 -65704275 + ETnERV2-int LTR ERVK 6001 6204 -1202 5 1271 187 300 28 28 chr4 89925927 89925999 -65704121 + MIRm SINE MIR 63 134 -142 5 1271 295 157 54 54 chr4 89926307 89926381 -65703739 + ETnERV2-int LTR ERVK 7331 7404 -2 5 1271 2635 119 11 5 chr4 89926382 89926763 -65703357 + RLTR9A2 LTR ERVK 1 383 0 5 1271 798 290 9 5 chr4 89926763 89926985 -65703135 - Lx6 LINE L1 -204 7256 7034 5 1271 1940 57 0 0 chr4 89926988 89927234 -65702886 + MT2C_Mm LTR ERVL 1 246 -229 5 1271 501 265 313 0 chr4 89927235 89927318 -65702802 - Lx6 LINE L1 -591 6869 6770 5 1271 3547 51 48 2 chr4 89927318 89927603 -65702517 + MT2C_Mm LTR ERVL 1 284 -191 5 1271 342 0 0 0 chr4 89927603 89927641 -65702479 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1271 3547 51 48 2 chr4 89927641 89927809 -65702311 + MT2C_Mm LTR ERVL 285 473 -2 5 1271 1481 258 96 34 chr4 89927809 89928600 -65701520 - Lx6 LINE L1 -691 6769 5649 5 1271 2060 130 75 9 chr4 89928603 89928952 -65701168 + RLTR9D LTR ERVK 1 372 -31 5 1271 814 238 37 112 chr4 89928952 89929107 -65701013 + ETnERV2-int LTR ERVK 28 162 -3152 5 1271 3616 27 7 39 chr4 89929107 89929569 -65700551 + L1Md_F3 LINE L1 6137 6583 -1 5 1271 814 238 37 112 chr4 89929569 89929815 -65700305 + ETnERV2-int LTR ERVK 163 399 -2915 5 1271 4044 132 91 16 chr4 89929803 89930608 -65699512 + ETnERV2-int LTR ERVK 1050 1914 -5492 5 1271 14622 53 3 14 chr4 89930608 89933299 -65696821 + L1Md_F2 LINE L1 3902 6557 -25 5 1271 396 0 0 0 chr4 89933303 89933347 -65696773 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 5 1271 11481 158 56 34 chr4 89933349 89936511 -65693609 + ETnERV2-int LTR ERVK 1775 5439 -1805 5 1271 1014 250 17 18 chr4 89936516 89936901 -65693219 + ETnERV2-int LTR ERVK 6222 6429 -977 5 1271 380 72 69 42 chr4 89937108 89937180 -65692940 + ETnERV2-int LTR ERVK 7331 7404 -2 5 1271 2085 91 186 14 chr4 89937181 89937525 -65692595 + RLTR9D LTR ERVK 1 403 0 5 1271 871 241 29 17 chr4 89937525 89937766 -65692354 - Lx6 LINE L1 -230 5650 5407 5 1271 275 189 19 0 chr4 89937763 89937816 -65692304 - L1_Mus4 LINE L1 -104 6532 6479 5 1271 1848 215 78 26 chr4 89937813 89938349 -65691771 + Lx4B LINE L1 6493 7056 -2 5 1271 503 367 19 10 chr4 89938554 89938763 -65691357 + MER20 DNA MER1_type 8 218 -1 5 1271 1761 144 87 0 chr4 89938810 89939108 -65691012 - IAPEY3_LTR LTR ERVK -8 324 1 5 1271 6648 121 18 10 chr4 89939108 89940394 -65689726 - MMERVK10C-int LTR ERVK 0 7513 6210 5 1271 207 0 0 0 chr4 89940414 89940437 -65689683 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1271 844 147 40 5 chr4 89940443 89940641 -65689479 + IAPEY3-int LTR ERVK 546 750 -6930 6 1271 209 315 0 0 chr4 89940641 89940730 -65689390 + A-rich Low_complexity Low_complexity 1 89 0 6 1271 1551 190 219 23 chr4 89940872 89941348 -65688772 + RMER16-int LTR ERVK 251 819 -4587 6 1271 449 221 88 0 chr4 89941353 89941466 -65688654 + RMER16-int LTR ERVK 938 1060 -5077 6 1271 428 182 0 0 chr4 89941582 89941659 -65688461 + ETnERV2-int LTR ERVK 2635 2711 -4695 6 1271 3204 138 147 10 chr4 89941702 89941817 -65688303 + ETnERV2-int LTR ERVK 3567 3678 -3728 6 1271 2944 40 0 0 chr4 89941817 89942163 -65687957 - ORR1A0 LTR MaLR 0 346 1 6 1271 3204 138 147 10 chr4 89942163 89942667 -65687453 + ETnERV2-int LTR ERVK 3679 4271 -3135 6 1271 478 178 9 36 chr4 89942672 89942783 -65687337 + MMETn-int LTR ERVK 2357 2464 -2380 6 1271 1118 90 0 0 chr4 89942809 89942965 -65687155 + ETnERV2-int LTR ERVK 4530 4685 -2896 6 1271 1315 102 0 0 chr4 89942965 89943151 -65686969 + ETnERV2-int LTR ERVK 4877 5062 -2519 6 1271 679 158 35 14 chr4 89943131 89943272 -65686848 - IAPEY3-int LTR ERVK -7536 144 1 6 1271 1758 149 86 0 chr4 89943275 89943576 -65686544 - IAPEY3_LTR LTR ERVK -5 327 1 6 1271 224 135 19 37 chr4 89943921 89943975 -65686145 + A-rich Low_complexity Low_complexity 2 54 0 6 1271 423 0 0 0 chr4 89945234 89945281 -65684839 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1271 426 53 0 0 chr4 89945281 89945338 -65684782 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1271 3218 162 48 32 chr4 89946635 89947259 -65682861 + Lx4B LINE L1 6423 7056 -2 6 1271 2998 20 0 17 chr4 89947608 89947960 -65682160 + ORR1A0 LTR MaLR 1 346 0 6 1271 13988 45 16 3 chr4 89947961 89949730 -65680390 + ORR1A0-int LTR MaLR 2 1792 0 6 1271 3028 26 0 0 chr4 89949730 89950076 -65680044 + ORR1A0 LTR MaLR 1 346 0 6 1271 200 128 0 25 chr4 89950596 89950636 -65679484 + A-rich Low_complexity Low_complexity 4 42 0 6 1271 915 216 147 11 chr4 89951328 89951709 -65678411 + Lx9 LINE L1 7204 7636 -8 6 1271 21 0 0 0 chr4 89952026 89952047 -65678073 + AT_rich Low_complexity Low_complexity 1 21 0 6 1271 226 185 26 145 chr4 89952126 89952146 -65677974 - ORR1D1 LTR MaLR -288 86 71 6 1271 1759 153 60 22 chr4 89952146 89952460 -65677660 - ORR1A3 LTR MaLR 0 326 1 6 1271 9828 151 41 78 chr4 89952460 89953636 -65676484 - ORR1A3-int LTR MaLR 0 1963 784 6 1271 998 126 18 23 chr4 89953636 89953807 -65676313 + Lx2 LINE L1 6828 6997 0 6 1271 9828 151 41 78 chr4 89953807 89954669 -65675451 - ORR1A3-int LTR MaLR -1180 783 1 6 1271 1618 174 46 3 chr4 89954673 89954978 -65675142 - ORR1A3 LTR MaLR -8 318 1 6 1271 3498 146 28 12 chr4 89955262 89955801 -65674319 - RMER6A LTR ERVK 0 756 212 6 1271 3206 41 8 8 chr4 89955801 89956196 -65673924 + MTA_Mm LTR MaLR 1 395 -1 6 1271 3498 142 617 9 chr4 89956196 89956325 -65673795 - RMER6A LTR ERVK -545 211 2 6 1271 363 282 31 118 chr4 89957130 89957291 -65672829 + B1F SINE Alu 3 149 0 6 1271 23 0 0 0 chr4 89957355 89957378 -65672742 + AT_rich Low_complexity Low_complexity 1 23 0 6 1271 324 275 0 0 chr4 89958887 89958956 -65671164 - ID4 SINE ID -10 73 5 6 1271 245 27 54 0 chr4 89959657 89959694 -65670426 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 6 1271 678 25 0 0 chr4 89959926 89960006 -65670114 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1271 2933 88 2 17 chr4 89960157 89960572 -65669548 - L1_Mus2 LINE L1 0 6566 6158 6 1271 337 235 85 12 chr4 89960932 89961096 -65669024 + Lx9 LINE L1 7461 7636 -8 6 1271 3088 177 34 13 chr4 89961100 89961724 -65668396 + Lx4B LINE L1 6415 7051 -7 6 1271 217 337 45 109 chr4 89961895 89962005 -65668115 - PB1D10 SINE Alu 0 117 15 6 1271 342 0 0 0 chr4 89962369 89962407 -65667713 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 6 1271 2082 71 33 20 chr4 89963631 89963934 -65666186 + IAPLTR2b LTR ERVK 1 307 -20 6 1271 1655 211 111 47 chr4 89964060 89964572 -65665548 + RLTR31_Mm LTR ERVK 17 561 0 6 1271 227 171 0 0 chr4 89964597 89964638 -65665482 + Lx6 LINE L1 5718 5758 -122 6 1271 1100 30 0 0 chr4 89964680 89964815 -65665305 - B1_Mus1 SINE Alu 0 148 14 6 1271 418 253 21 100 chr4 89964824 89965105 -65665015 + Lx6 LINE L1 5792 6042 -1654 6 1271 468 291 93 43 chr4 89965295 89965557 -65664563 - MTEa LTR MaLR -4 375 85 6 1271 268 289 16 88 chr4 89965692 89965795 -65664325 + MLT1D LTR MaLR 23 116 -511 6 1271 508 374 26 0 chr4 89965795 89965950 -65664170 + B3A SINE B2 2 160 -38 6 1271 264 127 0 0 chr4 89965953 89966008 -65664112 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1271 1069 330 8 45 chr4 89966168 89966653 -65663467 - MuLV-int LTR ERV1 -2302 5304 4838 6 1271 942 337 89 64 chr4 89966711 89967985 -65662135 - RLTR4_MM-int LTR ERV1 -4295 3306 2079 6 1271 819 306 84 21 chr4 89968476 89968856 -65661264 - RLTR4_MM-int LTR ERV1 -6088 1690 1287 6 1271 831 256 53 125 chr4 89969826 89970282 -65659838 - RLTR23 LTR ERV1 0 430 8 6 1271 441 126 0 59 chr4 89970305 89970440 -65659680 + (TTTA)n Simple_repeat Simple_repeat 1 127 0 6 1271 1150 62 0 0 chr4 89970440 89970584 -65659536 - B1_Mus1 SINE Alu 0 148 5 6 1271 1239 228 5 37 chr4 89970598 89970976 -65659144 - L1_Rod LINE L1 -442 5405 5040 6 1271 1481 240 72 20 chr4 89970982 89971471 -65658649 + Lx9 LINE L1 7130 7643 -1 6 1271 597 312 47 5 chr4 89971474 89971664 -65658456 + MLT1D LTR MaLR 308 505 0 6 1271 223 137 39 0 chr4 89971939 89971990 -65658130 + A-rich Low_complexity Low_complexity 3 55 0 6 1271 403 373 106 28 chr4 89972651 89972971 -65657149 + MLT2B1 LTR ERVL 3 347 -173 6 1271 22 0 0 0 chr4 89974006 89974028 -65656092 + AT_rich Low_complexity Low_complexity 1 22 0 6 1271 1927 224 22 9 chr4 89974049 89974505 -65655615 + Lx LINE L1 6193 6654 0 6 1271 1201 256 141 0 chr4 89974514 89974834 -65655286 + Lx5 LINE L1 6681 7045 -5 6 1271 207 0 0 0 chr4 89975074 89975097 -65655023 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1271 552 213 0 0 chr4 89976164 89976286 -65653834 + (TATG)n Simple_repeat Simple_repeat 3 124 0 6 1271 183 100 0 0 chr4 89976350 89976380 -65653740 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1271 412 327 82 68 chr4 89976457 89976647 -65653473 + L1ME1 LINE L1 5311 5515 -2480 6 1271 260 53 26 0 chr4 89976647 89976685 -65653435 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1271 485 329 76 66 chr4 89976685 89977085 -65653035 + L1ME1 LINE L1 5516 5912 -267 6 1271 203 318 23 12 chr4 89977274 89977360 -65652760 + GA-rich Low_complexity Low_complexity 1 87 0 6 1271 189 185 15 30 chr4 89977396 89977463 -65652657 + GA-rich Low_complexity Low_complexity 3 68 0 6 1271 266 295 0 11 chr4 89978384 89978473 -65651647 - MT2B2 LTR ERVL 0 584 497 6 1271 354 300 44 64 chr4 89978541 89978790 -65651330 + RLTR15 LTR ERVK 48 291 -68 6 1271 826 300 38 78 chr4 89978843 89979241 -65650879 - MT2B LTR ERVL -36 565 184 6 1271 21034 83 46 11 chr4 89979262 89982432 -65647688 + Lx3_Mus LINE L1 2639 5930 -1051 6 1271 4847 99 65 8 chr4 89982419 89983131 -65646989 + Lx3_Mus LINE L1 6215 6955 -54 6 1271 276 30 0 0 chr4 89983131 89983164 -65646956 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1271 4847 99 65 8 chr4 89983164 89983192 -65646928 + Lx3_Mus LINE L1 6956 6996 -13 6 1271 370 205 12 25 chr4 89983226 89983306 -65646814 - MT2B LTR ERVL -522 79 1 6 1271 4458 12 0 0 chr4 89983424 89983917 -65646203 - MT2_Mm LTR ERVL 0 493 1 6 1271 314 0 0 0 chr4 89983917 89983955 -65646165 - MERVL-int LTR ERVL 0 5485 5448 6 1271 392 167 46 35 chr4 89983955 89984042 -65646078 - ORR1A3-int LTR MaLR -1323 640 553 6 1271 32381 20 2 0 chr4 89984042 89988080 -65642040 - MERVL-int LTR ERVL -125 5360 1276 6 1271 818 0 0 0 chr4 89988071 89988161 -65641959 - MERVL-int LTR ERVL -5395 90 1 6 1271 4416 16 0 0 chr4 89988161 89988654 -65641466 - MT2_Mm LTR ERVL 0 493 1 6 1271 832 80 8 8 chr4 89989160 89989286 -65640834 - L1Md_F2 LINE L1 -16 6566 6441 6 1271 737 325 140 17 chr4 89989286 89989637 -65640483 - MTD LTR MaLR -13 406 13 6 1271 29 47 0 0 chr4 89989680 89989723 -65640397 + AT_rich Low_complexity Low_complexity 1 43 0 6 1271 411 78 0 0 chr4 89989918 89989982 -65640138 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1271 927 303 102 3 chr4 89990173 89990537 -65639583 - Tigger7 DNA MER2_type -8 2483 2084 6 1271 283 301 58 0 chr4 89990547 89990650 -65639470 - Tigger7 DNA MER2_type -2056 435 327 6 1271 328 219 258 10 chr4 89990962 89991059 -65639061 + RMER15 LTR ERVL 357 477 -98 6 1271 619 309 10 31 chr4 89991104 89991298 -65638822 + B3A SINE B2 8 197 -1 6 1271 855 109 69 48 chr4 89991378 89991523 -65638597 + B1_Mus1 SINE Alu 1 148 0 6 1271 358 266 23 61 chr4 89994444 89994576 -65635544 + MTEa LTR MaLR 253 379 0 6 1271 351 279 83 35 chr4 89995082 89995227 -65634893 + Lx7 LINE L1 6962 7113 -583 6 1271 397 309 79 31 chr4 89995234 89995551 -65634569 - L1_Mur2 LINE L1 -742 5135 4804 6 1271 1011 291 98 21 chr4 89995591 89996058 -65634062 + Lx8 LINE L1 6968 7470 -3 6 1271 738 316 133 47 chr4 89996406 89996983 -65633137 + Lx9 LINE L1 6973 7599 -45 6 1271 10520 145 19 56 chr4 89997029 89999749 -65630371 + L1Md_F LINE L1 261 2835 -3048 6 1271 2078 80 22 0 chr4 89999725 90000000 -65630120 + L1_Mus1 LINE L1 5962 6242 -325 6 1271 2287 67 19 0 chr4 90000000 90000316 -65629804 + L1_Mus1 LINE L1 6243 6564 -3 1 1271 1032 119 6 11 chr4 90001031 90001210 -65628910 + (GAA)n Simple_repeat Simple_repeat 1 178 0 2 1271 245 29 0 29 chr4 90001210 90001245 -65628875 + (GGA)n Simple_repeat Simple_repeat 2 35 0 3 1271 33 0 0 0 chr4 90001652 90001685 -65628435 + AT_rich Low_complexity Low_complexity 1 33 0 4 1271 1804 140 66 37 chr4 90002122 90002470 -65627650 + ORR1B1 LTR MaLR 37 394 0 5 1271 306 260 64 128 chr4 90002564 90002736 -65627384 - RLTR24 LTR ERV1 -46 483 323 6 1271 272 365 8 45 chr4 90002870 90003002 -65627118 - RLTR24 LTR ERV1 -402 127 1 6 1271 423 0 0 0 chr4 90003340 90003387 -65626733 + (TTA)n Simple_repeat Simple_repeat 2 48 0 7 1271 852 246 54 27 chr4 90005317 90005614 -65624506 + L1_Mur3 LINE L1 879 1183 -6529 8 1271 861 188 122 0 chr4 90005619 90005816 -65624304 - URR1B DNA MER1_type -4 221 1 9 1271 768 292 90 84 chr4 90005872 90006222 -65623898 - MER67C LTR ERV1 -288 423 51 1 1271 6615 75 26 16 chr4 90006222 90007142 -65622978 + RLTR13B3 LTR ERVK 1 929 0 1 1271 567 291 78 110 chr4 90007142 90007189 -65622931 - MER67C LTR ERV1 -464 50 1 1 1271 391 265 103 32 chr4 90007873 90008029 -65622091 - L1MC4 LINE L1 -196 7846 7680 1 1271 565 148 44 59 chr4 90008170 90008306 -65621814 + RLTR22_Mur LTR ERVK 229 371 -1437 1 1271 25 0 0 0 chr4 90008638 90008663 -65621457 + AT_rich Low_complexity Low_complexity 1 25 0 1 1271 481 288 31 54 chr4 90008998 90009222 -65620898 + Lx9 LINE L1 7041 7259 -385 1 1271 357 322 21 57 chr4 90009249 90009443 -65620677 - Lx9 LINE L1 -889 6755 6569 1 1271 221 174 22 0 chr4 90009540 90009586 -65620534 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1271 747 305 4 29 chr4 90009618 90009861 -65620259 + Lx9 LINE L1 6341 6577 -1067 1 1271 286 279 7 65 chr4 90010682 90010820 -65619300 + Lx4B LINE L1 6866 6995 -63 1 1271 180 0 0 0 chr4 90010838 90010858 -65619262 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1271 12013 88 104 7 chr4 90011660 90013725 -65616395 - L1_Mus2 LINE L1 -591 5975 3676 2 1271 4570 79 2 14 chr4 90013725 90014352 -65615768 + L1_Mus2 LINE L1 5948 6566 0 2 1271 1292 82 10 158 chr4 90014357 90014388 -65615732 - L1_Mm LINE L1 -1007 4876 4849 2 1271 4586 65 3 3 chr4 90014388 90014975 -65615145 - LTRIS_Mus LTR ERV1 0 587 1 2 1271 1292 82 10 158 chr4 90014975 90015234 -65614886 - L1_Mm LINE L1 -1035 4848 4629 2 1271 243 88 0 0 chr4 90015858 90015892 -65614228 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 1271 283 81 15 46 chr4 90017318 90017383 -65612737 + (TTTTTG)n Simple_repeat Simple_repeat 3 65 0 2 1271 247 236 167 0 chr4 90017407 90017479 -65612641 - PB1 SINE Alu -2 125 42 2 1271 238 296 14 0 chr4 90017800 90017871 -65612249 + RMER1C Other Other 10 81 -1261 2 1271 2107 194 55 39 chr4 90017976 90018179 -65611941 + RLTR11A LTR ERVK 1 212 -316 2 1271 933 136 0 0 chr4 90018179 90018333 -65611787 + (GGA)n Simple_repeat Simple_repeat 3 156 0 2 1271 2107 194 55 39 chr4 90018333 90018638 -65611482 + RLTR11A LTR ERVK 213 516 -12 2 1271 1358 246 149 26 chr4 90018639 90019095 -65611025 + RMER1C Other Other 700 1211 -131 2 1271 1183 211 44 34 chr4 90019203 90019540 -65610580 - Lx2B LINE L1 0 7000 6634 3 1271 245 48 286 0 chr4 90019527 90019569 -65610551 + Lx2B LINE L1 6354 6407 -593 3 1271 267 310 86 26 chr4 90019675 90019791 -65610329 - MT2A LTR ERVL -326 207 85 3 1271 469 252 15 45 chr4 90019814 90019947 -65610173 - MT2A LTR ERVL -404 129 1 3 1271 1178 199 48 42 chr4 90019951 90020308 -65609812 - MERVL_2A-int LTR ERVL -4 5757 5399 3 1271 1189 274 25 61 chr4 90020308 90020361 -65609759 - MT2B LTR ERVL 0 601 554 3 1271 378 0 0 0 chr4 90020361 90020403 -65609717 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3 1271 1189 277 26 86 chr4 90020403 90020834 -65609286 - MT2B LTR ERVL -48 553 1 3 1271 261 317 56 48 chr4 90020976 90021006 -65609114 - MT2A LTR ERVL -313 220 188 3 1271 427 30 60 0 chr4 90021006 90021073 -65609047 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 3 1271 261 317 56 48 chr4 90021073 90021168 -65608952 - MT2A LTR ERVL -346 187 94 3 1271 376 262 19 37 chr4 90021204 90021311 -65608809 - MT2A LTR ERVL -410 123 19 3 1271 625 216 50 20 chr4 90021328 90021526 -65608594 - MERVL_2A-int LTR ERVL 0 5761 5558 3 1271 718 241 11 17 chr4 90021528 90021705 -65608415 + ORR1B2 LTR MaLR 2 177 -190 3 1271 3038 200 6 71 chr4 90021706 90022183 -65607937 - L1_Mur1 LINE L1 -3890 1987 1547 3 1271 1156 74 0 0 chr4 90022183 90022331 -65607789 - B1_Mus1 SINE Alu 0 148 1 3 1271 3232 167 19 38 chr4 90022331 90023342 -65606778 - L1_Mur1 LINE L1 -4331 1546 518 3 1271 1419 221 60 132 chr4 90023343 90023796 -65606324 - RMER19B LTR ERVK -482 420 1 4 1271 1027 167 0 0 chr4 90023797 90023983 -65606137 + Lx2B LINE L1 5875 6060 -940 4 1271 596 290 5 31 chr4 90023980 90024204 -65605916 + Lx2B LINE L1 6770 6987 -13 4 1271 240 175 0 0 chr4 90024279 90024342 -65605778 + GA-rich Low_complexity Low_complexity 1 63 0 4 1271 957 227 63 30 chr4 90024593 90024790 -65605330 - MERVL_2A-int LTR ERVL 0 5761 5556 4 1271 1296 248 22 25 chr4 90024790 90025154 -65604966 + ORR1B2 LTR MaLR 5 367 0 4 1271 957 227 63 30 chr4 90025154 90025319 -65604801 - MERVL_2A-int LTR ERVL -206 5555 5387 4 1271 1106 101 0 0 chr4 90025516 90025664 -65604456 + B1_Mus1 SINE Alu 1 148 0 4 1271 633 13 0 0 chr4 90025702 90025778 -65604342 + B1_Mm SINE Alu 62 137 -10 4 1271 183 42 0 0 chr4 90025778 90025802 -65604318 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1271 198 0 0 0 chr4 90028711 90028733 -65601387 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1271 341 379 5 10 chr4 90028733 90028938 -65601182 + Lx6 LINE L1 6234 6437 -1023 5 1271 206 182 36 0 chr4 90029008 90029063 -65601057 + GA-rich Low_complexity Low_complexity 3 59 0 5 1271 203 0 37 0 chr4 90029068 90029095 -65601025 + (CAT)n Simple_repeat Simple_repeat 2 29 0 5 1271 682 71 292 0 chr4 90029263 90029376 -65600744 + B1_Mus1 SINE Alu 1 146 -2 5 1271 261 0 0 0 chr4 90029376 90029405 -65600715 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1271 424 308 30 15 chr4 90029440 90029575 -65600545 - MER21B LTR ERV1 -518 345 209 5 1271 270 0 0 0 chr4 90029681 90029711 -65600409 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1271 21 0 0 0 chr4 90029847 90029868 -65600252 + AT_rich Low_complexity Low_complexity 1 21 0 5 1271 2234 156 26 4 chr4 90030601 90031092 -65599028 + RMER2 LTR ERV1 1 532 -35 5 1271 947 252 84 50 chr4 90031320 90031713 -65598407 - MT2B LTR ERVL -1 600 85 5 1271 2108 31 0 15 chr4 90031808 90032073 -65598047 - L1Md_F3 LINE L1 0 6584 6324 6 1271 757 251 25 23 chr4 90032176 90032419 -65597701 + ORR1B2 LTR MaLR 139 378 0 6 1271 441 217 73 24 chr4 90032421 90032586 -65597534 - MERVL_2A-int LTR ERVL -202 5559 5387 6 1271 241 206 14 14 chr4 90034022 90034057 -65596063 + T-rich Low_complexity Low_complexity 36 70 0 6 1271 2628 175 26 22 chr4 90034057 90034150 -65595970 - Lx4A LINE L1 -15 7043 6952 6 1271 3374 45 0 0 chr4 90034150 90034546 -65595574 + MTA_Mm LTR MaLR 1 396 0 6 1271 2628 175 26 22 chr4 90034546 90034955 -65595165 - Lx4A LINE L1 -107 6951 6539 6 1271 241 206 14 14 chr4 90034955 90034988 -65595132 + T-rich Low_complexity Low_complexity 3 35 0 6 1271 831 181 33 6 chr4 90034994 90035177 -65594943 - Lx3B LINE L1 -1 6972 6785 6 1271 1038 115 17 0 chr4 90035177 90035351 -65594769 + L1_Mur1 LINE L1 4113 4289 -1597 6 1271 4490 115 46 3 chr4 90036612 90036959 -65593161 + L1_Mur1 LINE L1 4275 4633 -1253 6 1271 207 0 0 0 chr4 90036959 90036982 -65593138 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1271 4490 115 46 3 chr4 90036982 90037385 -65592735 + L1_Mur1 LINE L1 4634 5046 -840 6 1271 441 0 0 0 chr4 90037385 90037434 -65592686 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1271 405 0 0 0 chr4 90037434 90037478 -65592642 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1271 4490 115 46 3 chr4 90037478 90037503 -65592617 + L1_Mur1 LINE L1 5047 5082 -804 6 1271 224 216 39 58 chr4 90037605 90037708 -65592412 + T-rich Low_complexity Low_complexity 4 104 0 7 1271 452 298 102 35 chr4 90039346 90039572 -65590548 + MIRb SINE MIR 27 267 -1 7 1271 2105 121 6 0 chr4 90040628 90040958 -65589162 + Lx2 LINE L1 6315 6646 -351 7 1271 1433 133 34 0 chr4 90040967 90041200 -65588920 + Lx2 LINE L1 6756 6996 -1 7 1271 23 0 0 0 chr4 90041851 90041874 -65588246 + AT_rich Low_complexity Low_complexity 1 23 0 7 1271 1992 225 60 50 chr4 90042588 90042901 -65587219 - Lx9 LINE L1 -385 7259 6932 7 1271 5485 181 13 11 chr4 90042901 90043933 -65586187 + Lx2 LINE L1 5951 6984 -13 7 1271 1992 225 60 50 chr4 90043933 90044203 -65585917 - Lx9 LINE L1 -713 6931 6670 7 1271 867 284 19 41 chr4 90044190 90044557 -65585563 + L1VL4 LINE L1 188 546 -5756 7 1271 1107 187 0 73 chr4 90044556 90044804 -65585316 - L1VL4 LINE L1 -5671 631 402 7 1271 536 220 111 68 chr4 90044807 90045041 -65585079 + Lx9 LINE L1 7400 7643 -1 8 1271 324 264 11 11 chr4 90045217 90045309 -65584811 + Lx8 LINE L1 6493 6584 -889 8 1271 288 0 0 0 chr4 90045340 90045372 -65584748 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1271 1192 272 60 31 chr4 90045566 90045919 -65584201 - MTE2a LTR MaLR -1 378 16 8 1271 486 49 0 0 chr4 90045934 90045995 -65584125 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 158 4979 157 45 30 chr4 90046010 90047170 -65582950 - Lx3B LINE L1 -1 6972 5878 8 1272 672 107 29 91 chr4 90047422 90047597 -65582523 - Lx3_Mus LINE L1 0 7009 6846 8 1272 24 0 0 0 chr4 90047739 90047763 -65582357 + AT_rich Low_complexity Low_complexity 1 24 0 8 1272 1326 256 42 89 chr4 90047841 90048269 -65581851 + MTD LTR MaLR 12 419 0 8 1272 2068 127 22 0 chr4 90048626 90048942 -65581178 - ORR1A2 LTR MaLR 0 327 5 8 1272 8968 16 53 53 chr4 90049125 90049642 -65580478 + L1_Mm LINE L1 4351 4895 -988 9 1272 231 183 46 77 chr4 90049642 90049707 -65580413 - RMER20A LTR ERVK -268 248 186 9 1272 8968 16 53 53 chr4 90049707 90050361 -65579759 + L1_Mm LINE L1 4896 5586 -297 9 1272 8365 36 1 0 chr4 90050361 90051380 -65578740 + L1Md_T LINE L1 5587 6582 0 9 1272 1233 48 0 0 chr4 90052439 90052586 -65577534 + B1_Mus2 SINE Alu 1 147 0 9 1272 235 337 55 22 chr4 90052893 90052984 -65577136 - L2c LINE L2 -1 3386 3293 9 1272 459 0 0 0 chr4 90053168 90053219 -65576901 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1272 360 0 0 0 chr4 90053288 90053328 -65576792 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1272 456 51 0 0 chr4 90053328 90053386 -65576734 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1272 6988 53 24 0 chr4 90054049 90054939 -65575181 + L1Md_F2 LINE L1 5671 6581 -1 9 1272 571 261 17 78 chr4 90055366 90055545 -65574575 + B2_Mm2 SINE B2 2 169 -26 9 1272 663 207 63 21 chr4 90055548 90055691 -65574429 + B1_Mur3 SINE Alu 1 149 0 1 1272 465 343 39 50 chr4 90055879 90055927 -65574193 - B4A SINE B4 -16 276 228 1 1272 342 0 0 0 chr4 90055927 90055965 -65574155 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1 1272 465 343 39 50 chr4 90055965 90056195 -65573925 - B4A SINE B4 -65 227 1 1 1272 31 0 0 0 chr4 90056270 90056301 -65573819 + AT_rich Low_complexity Low_complexity 1 31 0 1 1272 384 22 0 0 chr4 90056456 90056501 -65573619 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1272 377 208 113 0 chr4 90056899 90057058 -65573062 - Lx9 LINE L1 -2 7642 7466 1 1272 1531 172 82 23 chr4 90057071 90057374 -65572746 + ORR1A4 LTR MaLR 1 321 -8 1 1272 2219 248 41 24 chr4 90057384 90057971 -65572149 - Lx9 LINE L1 -201 7443 6847 1 1272 5372 65 0 0 chr4 90058272 90058953 -65571167 + L1_Mm LINE L1 4896 5576 -307 1 1272 337 314 42 6 chr4 90058949 90059178 -65570942 - L1_Mur3 LINE L1 -744 5136 4892 1 1272 4217 25 12 0 chr4 90059225 90059712 -65570408 - MT2_Mm LTR ERVL 0 493 1 1 1272 314 0 0 0 chr4 90059712 90059750 -65570370 - MERVL-int LTR ERVL 0 5485 5448 1 1272 242 115 36 71 chr4 90059750 90059806 -65570314 - ORR1A3-int LTR MaLR -1323 640 587 1 1272 19890 24 0 0 chr4 90059807 90062070 -65568050 + MERVL-int LTR ERVL 2940 5201 -284 1 1272 1035 43 0 0 chr4 90062077 90062215 -65567905 - MT-int LTR MaLR -290 808 671 1 1272 9436 21 0 3 chr4 90062215 90063315 -65566805 + MTA_Mm-int LTR MaLR 2 1098 0 1 1272 3415 20 10 0 chr4 90063315 90063707 -65566413 + MTA_Mm LTR MaLR 1 396 0 1 1272 358 337 15 94 chr4 90063707 90063942 -65566178 - L1_Mur3 LINE L1 -1048 4832 4627 1 1272 243 0 0 0 chr4 90063942 90063969 -65566151 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1272 358 337 15 94 chr4 90063969 90064061 -65566059 - L1_Mur3 LINE L1 -1254 4626 4531 1 1272 522 332 60 7 chr4 90064086 90064368 -65565752 - L1_Mur3 LINE L1 -1939 3941 3645 1 1272 1797 54 0 0 chr4 90064486 90064710 -65565410 - L1Md_F3 LINE L1 -17 6567 6344 1 1272 1325 38 0 0 chr4 90064710 90064867 -65565253 + L1Md_F3 LINE L1 6178 6334 -248 1 1272 210 134 45 0 chr4 90065975 90066042 -65564078 + T-rich Low_complexity Low_complexity 3 72 0 1 1272 1101 88 0 0 chr4 90066042 90066189 -65563931 - B1_Mus1 SINE Alu 0 148 2 1 1272 200 200 0 0 chr4 90066969 90067009 -65563111 + A-rich Low_complexity Low_complexity 2 41 0 1 1272 246 340 45 58 chr4 90067360 90067516 -65562604 - L2c LINE L2 -147 3240 3087 1 1272 207 114 0 0 chr4 90067697 90067732 -65562388 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 1272 4350 137 11 3 chr4 90070853 90071549 -65558571 + Lx2 LINE L1 6296 6997 0 1 1272 1098 286 68 20 chr4 90071550 90071903 -65558217 - Lx6 LINE L1 -136 7324 6955 1 1272 282 237 79 0 chr4 90071900 90071976 -65558144 + L1M2 LINE L1 3631 3712 -2431 1 1272 334 285 181 26 chr4 90071964 90072119 -65558001 + Lx7 LINE L1 5362 5540 -340 1 1272 2957 288 88 24 chr4 90072139 90072312 -65557808 + Lx7 LINE L1 5984 6173 -1523 1 1272 486 0 0 0 chr4 90072312 90072366 -65557754 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1272 462 36 0 0 chr4 90072366 90072421 -65557699 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1272 2957 288 88 24 chr4 90072421 90073379 -65556741 + Lx7 LINE L1 6174 7188 -508 1 1272 270 318 64 82 chr4 90073386 90073605 -65556515 - MLT1E1A LTR MaLR -327 353 139 1 1272 573 55 0 0 chr4 90075133 90075206 -65554914 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 1 1272 4450 86 15 5 chr4 90075252 90075862 -65554258 - L1_Mus1 LINE L1 0 6567 5952 1 1272 3624 58 0 1 chr4 90075862 90076403 -65553717 + L1_Mus1 LINE L1 5416 5955 -611 1 1272 1247 350 52 16 chr4 90076835 90077525 -65552595 + Lx8 LINE L1 6752 7466 -7 1 1272 6678 236 48 48 chr4 90078377 90080561 -65549559 + Lx7 LINE L1 5334 7516 -180 1 1272 910 305 33 19 chr4 90080524 90081005 -65549115 - L1_Mur3 LINE L1 -3269 2611 2124 1 1272 594 41 0 0 chr4 90081024 90081097 -65549023 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1272 2795 203 260 10 chr4 90081216 90081789 -65548331 + Lx LINE L1 4779 5525 -355 1 1272 537 30 0 0 chr4 90081789 90081856 -65548264 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1272 6915 120 14 3 chr4 90081856 90082917 -65547203 + Lx LINE L1 5526 6648 -6 1 1272 263 207 111 2 chr4 90082928 90083036 -65547084 - L1MC4a LINE L1 -906 7089 6976 1 1272 336 328 131 23 chr4 90083052 90083227 -65546893 - MTC LTR MaLR -109 291 98 1 1272 2228 119 148 17 chr4 90083251 90083671 -65546449 + IAPLTR2a LTR ERVK 1 475 0 1 1272 3583 100 26 47 chr4 90083673 90084546 -65545574 + IAPEz-int LTR ERVK 3 662 -5819 1 1272 2202 72 0 0 chr4 90084546 90084824 -65545296 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1272 5518 67 13 20 chr4 90084823 90085572 -65544548 + IAPEz-int LTR ERVK 5736 6479 -2 1 1272 2335 94 100 21 chr4 90085574 90085955 -65544165 + IAPLTR2a LTR ERVK 1 411 0 1 1272 368 241 24 12 chr4 90085955 90086039 -65544081 - MTC LTR MaLR -336 85 1 1 1272 1241 314 78 37 chr4 90086041 90086399 -65543721 + L1_Mur3 LINE L1 2755 3135 -2745 1 1272 213 39 0 0 chr4 90086399 90086425 -65543695 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1272 1241 314 78 37 chr4 90086425 90087070 -65543050 + L1_Mur3 LINE L1 3136 3798 -2082 1 1272 35 24 0 0 chr4 90087079 90087121 -65542999 + AT_rich Low_complexity Low_complexity 1 42 0 1 1272 917 205 33 113 chr4 90087135 90087532 -65542588 + Lx9 LINE L1 5080 5444 -403 1 1272 3166 176 154 76 chr4 90087536 90088362 -65541758 + RMER19B LTR ERVK 1 890 -12 1 1272 1820 221 3 39 chr4 90088389 90088827 -65541293 + Lx9 LINE L1 5458 5916 -1728 1 1272 1205 228 43 7 chr4 90088834 90089112 -65541008 + Lx9 LINE L1 6962 7249 -395 1 1272 477 50 0 0 chr4 90089848 90089908 -65540212 + (TTA)n Simple_repeat Simple_repeat 2 61 0 1 1272 2317 98 51 19 chr4 90090069 90090442 -65539678 - Lx LINE L1 -7 6647 6263 1 1272 770 311 85 101 chr4 90090463 90091156 -65538964 - Lx8 LINE L1 -59 7414 6733 1 1272 441 36 0 0 chr4 90091162 90091217 -65538903 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1272 6547 128 32 2 chr4 90091219 90092295 -65537825 - Lx3C LINE L1 -8 6968 5861 1 1272 5112 250 45 21 chr4 90092297 90093590 -65536530 + Lx5 LINE L1 5716 7039 -11 1 1272 301 198 65 9 chr4 90093608 90093715 -65536405 - L1_Mur3 LINE L1 -530 5350 5238 1 1272 1379 254 64 36 chr4 90093747 90094139 -65535981 - MTD LTR MaLR -8 411 9 1 1272 1673 292 101 54 chr4 90094144 90095318 -65534802 - L1_Mur3 LINE L1 -677 5203 3975 1 1272 203 61 0 29 chr4 90095491 90095525 -65534595 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1272 261 325 8 55 chr4 90097136 90097263 -65532857 - MER45A DNA Tip100 -3 175 55 1 1272 619 146 0 48 chr4 90097640 90097806 -65532314 + (TA)n Simple_repeat Simple_repeat 1 158 0 1 1272 3860 184 147 98 chr4 90098361 90099339 -65530781 - RLTR25A LTR ERVK 0 1028 3 1 1272 609 118 25 0 chr4 90099865 90099984 -65530136 + (TA)n Simple_repeat Simple_repeat 2 123 0 1 1272 561 15 0 0 chr4 90100263 90100329 -65529791 + (TTC)n Simple_repeat Simple_repeat 3 68 0 1 1272 742 194 17 0 chr4 90100314 90100489 -65529631 + CT-rich Low_complexity Low_complexity 3 180 0 1 1272 477 110 0 0 chr4 90100985 90101058 -65529062 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 1 1272 253 229 0 32 chr4 90101064 90101127 -65528993 + (TTA)n Simple_repeat Simple_repeat 3 63 0 1 1272 356 183 0 0 chr4 90101209 90101269 -65528851 - URR1B DNA MER1_type -2 223 164 1 1272 1872 175 47 19 chr4 90101268 90101708 -65528412 + RMER17C LTR ERVK 16 444 -514 1 1272 773 249 6 0 chr4 90101708 90101873 -65528247 - URR1B DNA MER1_type -57 168 3 1 1272 206 205 0 0 chr4 90102231 90102270 -65527850 + CT-rich Low_complexity Low_complexity 1 39 0 1 1272 324 0 0 0 chr4 90102297 90102333 -65527787 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1272 333 0 0 0 chr4 90102333 90102369 -65527751 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1272 21 0 0 0 chr4 90102570 90102591 -65527529 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 533 333 7 0 chr4 90103311 90103455 -65526665 - B3A SINE B2 -53 145 1 1 1272 2065 184 34 24 chr4 90107258 90107675 -65522445 - MTC LTR MaLR 0 421 1 1 1272 683 300 131 51 chr4 90107972 90108660 -65521460 + L1_Mur3 LINE L1 4546 5296 -590 1 1272 1005 288 62 23 chr4 90108666 90109227 -65520893 - L1MC LINE L1 -3262 2884 2302 1 1272 458 247 106 142 chr4 90109242 90109686 -65520434 - RLTR23 LTR ERV1 0 430 3 1 1272 240 300 51 58 chr4 90109937 90110075 -65520045 - L1MD2 LINE L1 -207 6152 6016 1 1272 790 284 0 23 chr4 90110154 90110370 -65519750 - B3 SINE B2 -1 215 5 1 1272 22 35 0 0 chr4 90110998 90111027 -65519093 + AT_rich Low_complexity Low_complexity 1 29 0 1 1272 853 279 10 19 chr4 90112573 90112778 -65517342 - B3 SINE B2 0 216 14 1 1272 424 330 20 45 chr4 90113174 90113418 -65516702 + Charlie1a DNA MER1_type 894 1131 -324 1 1272 230 368 0 29 chr4 90113471 90113541 -65516579 + B4A SINE B4 78 145 -147 1 1272 441 326 13 140 chr4 90113487 90113637 -65516483 + B1F2 SINE Alu 7 137 -12 1 1272 263 238 81 62 chr4 90113656 90113817 -65516303 + Charlie1a DNA MER1_type 1220 1383 -72 1 1272 369 0 0 0 chr4 90114199 90114240 -65515880 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1272 500 245 30 85 chr4 90114347 90114374 -65515746 + CYRA11_Mm Unknown Y-chromosome 156 171 -446 1 1272 1244 171 0 0 chr4 90114374 90114579 -65515541 - URR1B DNA MER1_type -1 224 20 1 1272 662 287 25 0 chr4 90114579 90114736 -65515384 - B3A SINE B2 -36 162 2 1 1272 1092 285 38 73 chr4 90114973 90115344 -65514776 - ORR1D2 LTR MaLR 0 370 13 1 1272 324 48 0 0 chr4 90117913 90117955 -65512165 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1272 240 315 0 22 chr4 90118650 90118741 -65511379 - RMER15 LTR ERVL -66 509 421 1 1272 529 200 31 0 chr4 90118805 90118935 -65511185 - Lx2 LINE L1 -3 6994 6861 1 1272 1404 259 83 43 chr4 90118935 90119444 -65510676 - RMER19C LTR ERVK -17 594 27 1 1272 398 307 26 17 chr4 90119444 90119560 -65510560 - RMER15 LTR ERVL -134 441 325 1 1272 695 275 63 0 chr4 90121263 90121470 -65508650 - MER2 DNA MER2_type 0 345 126 1 1272 217 309 0 0 chr4 90121490 90121545 -65508575 + B1F2 SINE Alu 21 75 -74 1 1272 242 306 28 0 chr4 90121708 90121780 -65508340 + ORR1E LTR MaLR 24 97 -262 1 1272 705 313 95 21 chr4 90122038 90122322 -65507798 + MTE-int LTR MaLR 11 315 -1265 1 1272 538 242 123 128 chr4 90122467 90122608 -65507512 + RMER10A LTR ERVL 24 163 -279 1 1272 189 0 0 0 chr4 90122608 90122629 -65507491 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 1 1272 538 242 123 128 chr4 90122629 90122894 -65507226 + RMER10A LTR ERVL 164 428 -14 1 1272 1069 361 43 27 chr4 90122903 90123418 -65506702 + MTE-int LTR MaLR 301 823 -757 1 1272 1755 190 85 0 chr4 90123463 90123794 -65506326 - ORR1B2 LTR MaLR -8 359 1 1 1272 1549 347 93 14 chr4 90123891 90124521 -65505599 + MTE-int LTR MaLR 847 1527 -53 1 1272 306 344 21 0 chr4 90124521 90124617 -65505503 + ORR1E LTR MaLR 1 98 -261 1 1272 202 135 0 26 chr4 90124744 90124782 -65505338 + CT-rich Low_complexity Low_complexity 3 39 0 1 1272 235 248 0 73 chr4 90125220 90125329 -65504791 + Lx5 LINE L1 867 967 -6119 1 1272 1164 178 143 0 chr4 90125318 90125604 -65504516 - L1_Mur2 LINE L1 -3017 2860 2534 1 1272 2503 171 4 13 chr4 90125601 90126075 -65504045 + Lx5 LINE L1 4652 5121 -756 1 1272 599 291 104 30 chr4 90126074 90126343 -65503777 - L1_Mur3 LINE L1 -897 4983 4695 1 1272 5819 182 52 21 chr4 90126347 90128104 -65502016 + Lx5 LINE L1 5114 6908 -142 1 1272 419 205 70 18 chr4 90128630 90128744 -65501376 + Lx7 LINE L1 6874 6993 -703 2 1272 6821 141 23 5 chr4 90128744 90130629 -65499491 + Lx2 LINE L1 4729 6645 -352 2 1272 1289 128 24 5 chr4 90130627 90130839 -65499281 + Lx LINE L1 6427 6642 -12 2 1272 271 207 69 0 chr4 90130988 90131046 -65499074 + MTEa LTR MaLR 4 65 -314 2 1272 569 299 111 60 chr4 90131128 90131462 -65498658 + MT2A LTR ERVL 183 533 0 2 1272 6087 107 20 8 chr4 90132897 90133804 -65496316 - L1_Mus4 LINE L1 -6 6630 5713 2 1272 401 326 41 0 chr4 90133916 90134088 -65496032 - L1M4c LINE L1 -4606 1778 1600 2 1272 552 310 114 19 chr4 90134086 90134738 -65495382 + L1M3 LINE L1 5030 5748 -564 2 1272 4623 215 72 170 chr4 90134814 90135845 -65494275 + Lx9 LINE L1 4807 5811 -1833 2 1272 1150 42 0 20 chr4 90135845 90135992 -65494128 + B1_Mm SINE Alu 4 147 0 2 1272 4623 255 88 99 chr4 90135992 90137847 -65492273 + Lx9 LINE L1 5812 7639 -5 2 1272 775 322 80 18 chr4 90137960 90138562 -65491558 + L1ME2z LINE L1 5395 6038 -406 2 1272 3173 208 10 2 chr4 90138671 90139249 -65490871 + Lx5 LINE L1 6453 7035 -15 2 1272 21 36 0 0 chr4 90139250 90139278 -65490842 + AT_rich Low_complexity Low_complexity 1 28 0 2 1272 27 29 0 0 chr4 90140128 90140162 -65489958 + AT_rich Low_complexity Low_complexity 1 34 0 2 1272 491 250 47 8 chr4 90140928 90141057 -65489063 + B1_Mur1 SINE Alu 2 135 -14 2 1272 351 311 131 54 chr4 90141133 90141460 -65488660 - Lx9 LINE L1 -163 7481 7131 2 1272 192 477 0 0 chr4 90142294 90142382 -65487738 + MIRb SINE MIR 42 129 -139 2 1272 255 152 0 0 chr4 90142983 90143029 -65487091 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1272 3707 146 5 8 chr4 90145632 90146225 -65483895 - RLTR17 LTR ERVK 0 692 102 2 1272 505 308 20 0 chr4 90146874 90147020 -65483100 + RSINE1 SINE B4 15 163 -2 2 1272 1028 85 7 0 chr4 90148204 90148345 -65481775 - B1_Mus1 SINE Alu -6 142 1 2 1272 596 360 16 0 chr4 90148411 90148600 -65481520 - B4A SINE B4 0 292 101 2 1272 25 75 0 0 chr4 90148891 90148944 -65481176 + AT_rich Low_complexity Low_complexity 1 53 0 2 1272 1126 64 0 0 chr4 90149383 90149523 -65480597 - B1_Mus1 SINE Alu -7 141 2 2 1272 551 304 106 19 chr4 90150019 90150401 -65479719 - L1MA8 LINE L1 -401 5890 5479 2 1272 268 234 41 29 chr4 90150436 90150608 -65479512 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 2 1272 368 278 78 0 chr4 90150891 90151032 -65479088 - RLTR21 LTR ERVK -136 1436 1288 2 1272 6713 90 26 3 chr4 90151043 90152056 -65478064 + MusHAL1 LINE L1 1051 2086 -626 2 1272 5076 123 7 1 chr4 90152658 90153622 -65476498 + Lx LINE L1 5357 6326 -328 2 1272 959 156 12 6 chr4 90153703 90153871 -65476249 + RLTR19 LTR ERVK 2 170 -329 2 1272 1802 183 26 24 chr4 90153863 90153883 -65476237 - RMER6A LTR ERVK -266 490 474 2 1272 465 129 0 73 chr4 90153883 90153992 -65476128 - Lx2B LINE L1 0 7000 6900 2 1272 1802 181 217 24 chr4 90153992 90154385 -65475735 - RMER6A LTR ERVK -283 473 1 2 1272 514 260 38 38 chr4 90154390 90154550 -65475570 - MT2A LTR ERVL -359 174 15 2 1272 234 0 0 0 chr4 90155252 90155278 -65474842 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1272 360 0 0 0 chr4 90155278 90155317 -65474803 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1272 4260 140 29 71 chr4 90155420 90156332 -65473788 - Lx4A LINE L1 -686 6372 5494 2 1272 2916 158 51 4 chr4 90156304 90156922 -65473198 + Lx4A LINE L1 6333 7041 -9 2 1272 288 0 0 0 chr4 90156965 90156997 -65473123 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 2 1272 930 170 0 0 chr4 90157003 90157174 -65472946 + GA-rich Low_complexity Low_complexity 2 172 0 2 1272 183 186 0 0 chr4 90157818 90157861 -65472259 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 2 1272 290 156 39 96 chr4 90158083 90158239 -65471881 + (TTATA)n Simple_repeat Simple_repeat 5 151 0 2 1272 23 0 0 0 chr4 90158343 90158366 -65471754 + AT_rich Low_complexity Low_complexity 1 23 0 2 1272 576 319 74 26 chr4 90159677 90159947 -65470173 - RMER15 LTR ERVL 0 575 293 2 1272 4738 50 0 0 chr4 90160148 90160724 -65469396 + L1Md_F2 LINE L1 5995 6570 -12 2 1272 311 0 26 0 chr4 90160745 90160784 -65469336 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 1272 236 28 56 0 chr4 90160794 90160830 -65469290 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1272 1125 81 0 0 chr4 90160851 90160999 -65469121 + B1_Mus1 SINE Alu 1 148 0 2 1272 702 91 0 0 chr4 90161016 90161115 -65469005 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 2 1272 286 167 0 0 chr4 90162046 90162094 -65468026 - Lx9 LINE L1 -213 7431 7384 2 1272 1224 67 0 0 chr4 90162828 90163008 -65467112 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1272 516 268 11 0 chr4 90163012 90163129 -65466991 - B1_Mur1 SINE Alu -16 133 10 2 1272 1212 283 40 35 chr4 90163509 90163886 -65466234 + MTE2a LTR MaLR 1 379 0 2 1272 26 64 0 0 chr4 90165356 90165403 -65464717 + AT_rich Low_complexity Low_complexity 1 47 0 2 1272 401 288 54 114 chr4 90166942 90167091 -65463029 - RSINE1 SINE B4 -14 151 12 2 1272 441 0 0 0 chr4 90167243 90167292 -65462828 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1272 4115 229 60 4 chr4 90167320 90168150 -65461970 + Lx5 LINE L1 6142 7018 -32 2 1272 192 40 0 0 chr4 90168156 90168181 -65461939 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2 1272 352 309 80 48 chr4 90168448 90168635 -65461485 - B3A SINE B2 -1 197 5 2 1272 2961 139 25 2 chr4 90169278 90169293 -65460827 - L1_Mur2 LINE L1 -1132 4745 4730 2 1272 243 0 0 0 chr4 90169293 90169320 -65460800 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1272 2961 139 25 2 chr4 90169320 90169822 -65460298 - Lx3C LINE L1 -1148 4729 4216 2 1272 7491 155 15 18 chr4 90169817 90172049 -65458071 + Lx3C LINE L1 4745 6974 -2 2 1272 3417 30 2 0 chr4 90172667 90173062 -65457058 - MTA_Mm LTR MaLR 0 396 1 2 1272 695 298 78 34 chr4 90173375 90173848 -65456272 + L1ME2 LINE L1 5473 5966 -198 2 1272 265 347 167 27 chr4 90174835 90175285 -65454835 + L2 LINE L2 1646 2158 -1261 2 1272 1333 134 14 22 chr4 90175583 90175787 -65454333 + RMER10B LTR ERVL 1 204 -194 2 1272 756 88 0 0 chr4 90175787 90175901 -65454219 + (TC)n Simple_repeat Simple_repeat 2 115 0 2 1272 1333 134 14 22 chr4 90175901 90175918 -65454202 + RMER10B LTR ERVL 205 220 -178 2 1272 305 139 0 0 chr4 90175929 90175972 -65454148 + RMER10B LTR ERVL 356 398 0 2 1272 1617 230 24 0 chr4 90176432 90176767 -65453353 + ORR1D2 LTR MaLR 28 370 0 2 1272 692 266 75 157 chr4 90177075 90177526 -65452594 + RLTR23 LTR ERV1 13 426 -4 2 1273 198 0 0 0 chr4 90178296 90178318 -65451802 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1273 248 143 0 18 chr4 90179763 90179783 -65450337 + (TA)n Simple_repeat Simple_repeat 2 20 0 2 1273 243 0 0 0 chr4 90179783 90179810 -65450310 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1273 248 143 0 18 chr4 90179810 90179830 -65450290 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1273 1124 71 0 0 chr4 90179830 90179971 -65450149 - B1_Mus2 SINE Alu -2 145 5 2 1273 248 143 0 18 chr4 90179971 90179986 -65450134 + (TA)n Simple_repeat Simple_repeat 1 15 0 2 1273 419 125 14 0 chr4 90180302 90180374 -65449746 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2 1273 234 0 0 0 chr4 90180545 90180571 -65449549 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1273 400 267 30 109 chr4 90180613 90180815 -65449305 + L1_Mm LINE L1 5390 5575 -308 2 1273 426 88 0 0 chr4 90180815 90180883 -65449237 + (TAAAA)n Simple_repeat Simple_repeat 1 68 0 2 1273 188 143 24 0 chr4 90181183 90181225 -65448895 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1273 1691 170 13 105 chr4 90181405 90181644 -65448476 - ORR1A0 LTR MaLR 0 346 113 2 1273 490 99 11 21 chr4 90181644 90181737 -65448383 - L1Md_F2 LINE L1 -12 6570 6479 2 1273 1691 170 13 105 chr4 90181737 90181878 -65448242 - ORR1A0 LTR MaLR -234 112 1 2 1273 4112 158 155 6 chr4 90181878 90182689 -65447431 - ORR1A0-int LTR MaLR 0 1792 861 2 1273 225 0 0 0 chr4 90182689 90182714 -65447406 + (TTTAA)n Simple_repeat Simple_repeat 2 26 0 2 1273 22809 172 25 6 chr4 90182714 90188698 -65441422 - Lx LINE L1 -13 6641 542 2 1273 1603 208 214 13 chr4 90188698 90189253 -65440867 - ORR1A2-int LTR MaLR -920 1043 377 2 1273 1438 189 4 4 chr4 90189245 90189505 -65440615 - ORR1A2 LTR MaLR -67 260 1 2 1273 228 185 30 30 chr4 90189624 90189691 -65440429 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 2 1273 186 71 0 0 chr4 90189967 90189995 -65440125 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1273 23 0 0 0 chr4 90190102 90190125 -65439995 + AT_rich Low_complexity Low_complexity 1 23 0 2 1273 4253 250 64 43 chr4 90191015 90191165 -65438955 + Lx6 LINE L1 5875 6024 -1436 2 1273 324 0 0 0 chr4 90191165 90191201 -65438919 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 2 1273 4253 250 64 43 chr4 90191201 90192283 -65437837 + Lx6 LINE L1 6025 7133 -327 2 1273 840 221 84 0 chr4 90192281 90192507 -65437613 - Lx2A1 LINE L1 -2 7006 6762 2 1273 1120 178 62 18 chr4 90192504 90192778 -65437342 + Lx7 LINE L1 7410 7695 -1 2 1273 319 157 0 35 chr4 90192784 90192870 -65437250 + GA-rich Low_complexity Low_complexity 2 84 0 2 1273 842 180 0 6 chr4 90192883 90193062 -65437058 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1273 709 225 0 0 chr4 90193218 90193360 -65436760 - B1_Mus1 SINE Alu -5 143 2 2 1273 964 212 77 0 chr4 90194045 90194267 -65435853 + Lx5 LINE L1 6691 6929 -121 2 1273 626 232 105 41 chr4 90194272 90194443 -65435677 - ORR1A4-int LTR MaLR -695 1268 1087 2 1273 2888 179 108 81 chr4 90194441 90195183 -65434937 - ORR1A4-int LTR MaLR -1201 762 1 2 1273 1767 158 40 16 chr4 90195183 90195504 -65434616 - ORR1A4 LTR MaLR 0 329 1 2 1273 241 276 25 38 chr4 90195723 90195802 -65434318 + MT2B LTR ERVL 10 87 -446 2 1273 1058 246 27 116 chr4 90195834 90196247 -65433873 + MT2B LTR ERVL 226 601 0 2 1273 248 53 26 0 chr4 90197016 90197054 -65433066 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1273 282 26 0 0 chr4 90197056 90197095 -65433025 - Lx2 LINE L1 -10 6987 6949 2 1273 3565 154 57 0 chr4 90197092 90197728 -65432392 - L1_Mur2 LINE L1 -1454 4423 3752 2 1273 3485 118 35 41 chr4 90197706 90198340 -65431780 - MusHAL1 LINE L1 -1124 1588 959 2 1273 1195 91 0 0 chr4 90198410 90198575 -65431545 - Lx3C LINE L1 -1018 5958 5794 2 1273 301 320 90 11 chr4 90198972 90199149 -65430971 - L1MCa LINE L1 -4970 1538 1348 3 1273 3932 77 4 0 chr4 90199518 90200036 -65430084 - L1_Mus1 LINE L1 0 6567 6048 3 1273 4779 78 0 0 chr4 90200037 90200678 -65429442 + L1_Mm LINE L1 4947 5616 -567 3 1273 7270 67 21 16 chr4 90200678 90201659 -65428461 + L1Md_F2 LINE L1 5588 6573 -9 3 1273 1102 265 25 17 chr4 90201659 90201703 -65428417 + L1_Mm LINE L1 5617 5663 -520 3 1273 326 147 15 0 chr4 90201874 90201942 -65428178 + CT-rich Low_complexity Low_complexity 2 70 0 3 1273 555 56 0 0 chr4 90201942 90202013 -65428107 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1273 462 314 92 10 chr4 90203058 90203254 -65426866 + B3 SINE B2 5 216 0 3 1273 7008 61 26 9 chr4 90203971 90204893 -65425227 + L1Md_F2 LINE L1 5642 6579 -3 3 1273 1065 135 73 0 chr4 90204968 90205160 -65424960 - Lx4B LINE L1 -1069 5989 5784 3 1273 648 252 29 19 chr4 90205159 90205431 -65424689 + Lx4B LINE L1 6020 6416 -581 3 1273 1964 70 0 0 chr4 90205775 90206032 -65424088 - L1_Mus2 LINE L1 -1 6565 6309 3 1273 3575 78 14 4 chr4 90206032 90206518 -65423602 + L1_Mus2 LINE L1 5825 6315 -251 3 1273 207 0 0 0 chr4 90207494 90207517 -65422603 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1273 23 33 0 0 chr4 90207619 90207649 -65422471 + AT_rich Low_complexity Low_complexity 1 30 0 3 1273 237 232 147 0 chr4 90207660 90207755 -65422365 + Lx9 LINE L1 7525 7633 -11 3 1273 338 333 118 69 chr4 90207783 90208131 -65421989 + MLT1A0 LTR MaLR 1 365 0 3 1273 715 318 17 39 chr4 90208240 90208472 -65421648 + B4A SINE B4 2 228 -64 3 1273 434 136 12 0 chr4 90208550 90208631 -65421489 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1273 1546 263 47 40 chr4 90209232 90209704 -65420416 - RMER19C LTR ERVK 0 611 137 3 1273 304 340 0 76 chr4 90209945 90210063 -65420057 - PB1D7 SINE Alu -11 109 1 3 1273 554 319 0 0 chr4 90211061 90211196 -65418924 + MTD LTR MaLR 84 218 -201 3 1273 1331 82 0 10 chr4 90211201 90211398 -65418722 + L1Md_F2 LINE L1 6348 6542 -40 3 1273 269 68 0 22 chr4 90211398 90211443 -65418677 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 1273 1090 208 37 0 chr4 90211473 90211689 -65418431 + MTD LTR MaLR 196 419 0 3 1273 411 328 45 11 chr4 90212213 90212392 -65417728 + MTEa LTR MaLR 193 377 -2 3 1273 23621 161 28 9 chr4 90213286 90219341 -65410779 + Lx LINE L1 395 6572 -82 3 1273 191 333 114 40 chr4 90219443 90219618 -65410502 + L3 LINE CR1 3559 3746 -743 3 1273 639 303 26 26 chr4 90220192 90220382 -65409738 - B3A SINE B2 0 198 9 3 1273 36729 24 0 0 chr4 90220444 90226938 -65403182 - L1Md_T LINE L1 0 6585 41 3 1273 336 341 102 15 chr4 90227097 90227234 -65402886 - B1F1 SINE Alu 0 149 1 3 1273 395 322 18 79 chr4 90227882 90228047 -65402073 - RSINE1 SINE B4 0 165 11 3 1273 6382 70 0 2 chr4 90228306 90229132 -65400988 + L1Md_F2 LINE L1 4763 5586 -297 3 1273 7744 56 8 16 chr4 90229132 90230136 -65399984 + L1Md_F2 LINE L1 5587 6582 0 3 1273 1252 273 10 12 chr4 90230136 90230178 -65399942 + L1M4 LINE L1 5616 5657 -517 3 1273 22 0 0 0 chr4 90230245 90230267 -65399853 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 208 280 67 0 chr4 90230304 90230379 -65399741 - MIR SINE MIR -9 253 174 3 1273 231 345 12 12 chr4 90230782 90230867 -65399253 - MLT1A0 LTR MaLR -18 449 365 3 1273 276 349 53 8 chr4 90230947 90231080 -65399040 - MLT1A0 LTR MaLR -216 149 11 3 1273 811 332 39 14 chr4 90231095 90231379 -65398741 + MLT1E LTR MaLR 361 651 -2 3 1273 321 26 0 0 chr4 90231414 90231452 -65398668 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 3 1273 598 246 173 0 chr4 90231452 90231631 -65398489 - ID_B1 SINE B4 -11 213 4 3 1273 21 0 0 0 chr4 90232936 90232957 -65397163 + AT_rich Low_complexity Low_complexity 1 21 0 3 1273 25 0 0 0 chr4 90234143 90234168 -65395952 + AT_rich Low_complexity Low_complexity 1 25 0 3 1273 183 319 14 0 chr4 90234931 90235003 -65395117 + MIRb SINE MIR 130 202 -66 3 1273 239 180 0 20 chr4 90235096 90235147 -65394973 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 3 1273 243 396 65 7 chr4 90235551 90235826 -65394294 - LTR79 LTR ERVL -118 409 119 3 1273 28 29 0 0 chr4 90236057 90236092 -65394028 + AT_rich Low_complexity Low_complexity 1 35 0 3 1273 419 276 8 8 chr4 90237064 90237181 -65392939 + B1_Mur2 SINE Alu 33 149 0 3 1273 578 335 11 5 chr4 90237270 90237459 -65392661 + Tigger5 DNA MER2_type 38 227 -2179 3 1273 22 70 0 0 chr4 90239310 90239353 -65390767 + AT_rich Low_complexity Low_complexity 1 43 0 3 1273 3213 230 53 12 chr4 90239353 90240102 -65390018 - Lx3C LINE L1 -2 6974 6195 3 1273 357 145 0 0 chr4 90240130 90240192 -65389928 + (TTA)n Simple_repeat Simple_repeat 1 62 0 3 1273 5611 124 48 20 chr4 90240192 90241133 -65388987 - Lx3C LINE L1 -4 6972 6006 3 1273 29 0 0 0 chr4 90241249 90241278 -65388842 + AT_rich Low_complexity Low_complexity 1 29 0 3 1273 191 307 48 38 chr4 90241299 90241404 -65388716 - MIR SINE MIR -60 208 103 3 1273 329 196 202 0 chr4 90242102 90242198 -65387922 + RMER17D LTR ERVK 357 466 -423 3 1273 998 71 7 0 chr4 90242198 90242338 -65387782 + (TTTC)n Simple_repeat Simple_repeat 3 143 0 3 1273 329 196 202 0 chr4 90242338 90242399 -65387721 + RMER17D LTR ERVK 467 545 -344 3 1273 222 37 0 0 chr4 90244233 90244260 -65385860 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1273 258 345 51 102 chr4 90244270 90244486 -65385634 + B4 SINE B4 88 292 0 3 1273 2613 112 15 12 chr4 90244715 90245120 -65385000 - Lx2 LINE L1 0 6997 6592 3 1273 24 67 0 0 chr4 90245174 90245219 -65384901 + AT_rich Low_complexity Low_complexity 1 45 0 3 1273 546 198 0 0 chr4 90245249 90245426 -65384694 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1273 311 352 16 54 chr4 90245426 90245612 -65384508 - B3A SINE B2 -16 182 4 3 1273 872 282 27 27 chr4 90245634 90245929 -65384191 - Lx6 LINE L1 -12 7448 7154 3 1273 27 62 0 0 chr4 90246030 90246078 -65384042 + AT_rich Low_complexity Low_complexity 1 48 0 3 1273 35 0 0 0 chr4 90246392 90246427 -65383693 + AT_rich Low_complexity Low_complexity 1 35 0 3 1273 243 100 75 0 chr4 90246779 90246819 -65383301 - ORR1D1 LTR MaLR -8 366 324 3 1273 195 69 0 0 chr4 90246898 90246927 -65383193 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1273 873 358 97 38 chr4 90247316 90247813 -65382307 - MTE-int LTR MaLR -34 1546 1021 3 1273 763 276 47 38 chr4 90247872 90248083 -65382037 + MTD LTR MaLR 12 224 -195 3 1273 2998 45 0 0 chr4 90248083 90248457 -65381663 - L1_Mm LINE L1 -1784 4099 3726 3 1273 1135 80 11 28 chr4 90248457 90248636 -65381484 + L1Md_F2 LINE L1 6407 6582 0 3 1273 662 253 56 10 chr4 90248636 90248832 -65381288 + MTD LTR MaLR 215 419 0 3 1273 631 317 89 98 chr4 90248832 90249166 -65380954 - MTE-int LTR MaLR -588 992 662 3 1273 473 311 114 0 chr4 90249312 90249444 -65380676 - RSINE1 SINE B4 -11 154 8 3 1273 307 333 92 17 chr4 90249665 90249784 -65380336 - MTE-int LTR MaLR -1277 303 176 3 1273 5048 65 0 0 chr4 90249788 90250431 -65379689 + L1Md_F2 LINE L1 5940 6582 0 3 1273 2144 187 0 8 chr4 90250899 90251292 -65378828 - ORR1B1 LTR MaLR 0 394 5 3 1273 296 241 11 11 chr4 90251362 90251450 -65378670 + (TAAA)n Simple_repeat Simple_repeat 1 88 0 3 1273 11666 97 3 1 chr4 90251505 90253885 -65376235 - L1_Mus1 LINE L1 0 6567 4183 3 1273 194 288 0 17 chr4 90255587 90255647 -65374473 + L3 LINE CR1 2794 2852 -1637 3 1273 210 351 15 8 chr4 90256260 90256384 -65373736 + MIR SINE MIR 39 160 -102 3 1273 192 309 18 0 chr4 90256573 90256628 -65373492 + L4 LINE RTE 96 151 -1878 3 1273 687 162 0 31 chr4 90256628 90256787 -65373333 + CT-rich Low_complexity Low_complexity 2 155 0 3 1273 262 318 24 0 chr4 90256793 90256878 -65373242 - B1_Mus1 SINE Alu -51 97 11 3 1273 1154 182 22 22 chr4 90257327 90257552 -65372568 + URR1B DNA MER1_type 1 225 0 3 1273 2343 107 33 0 chr4 90258409 90258772 -65371348 - Lx LINE L1 -6 6648 6274 3 1273 213 308 25 8 chr4 90259095 90259216 -65370904 + (TA)n Simple_repeat Simple_repeat 2 124 0 3 1273 230 206 32 0 chr4 90259199 90259262 -65370858 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1273 321 316 8 81 chr4 90259267 90259391 -65370729 - B1_Mur1 SINE Alu -1 148 34 3 1273 393 308 98 0 chr4 90259602 90259745 -65370375 - RSINE1 SINE B4 0 165 9 3 1273 3493 101 95 0 chr4 90259907 90260424 -65369696 - RMER2 LTR ERV1 -1 566 1 3 1273 243 0 0 0 chr4 90261760 90261787 -65368333 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1273 27 0 0 0 chr4 90261886 90261913 -65368207 + AT_rich Low_complexity Low_complexity 1 27 0 3 1273 213 39 0 0 chr4 90262336 90262362 -65367758 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3 1273 668 295 21 52 chr4 90262364 90262557 -65367563 - B3A SINE B2 -5 193 7 3 1273 1726 222 48 134 chr4 90262867 90263450 -65366670 + MT2A LTR ERVL 1 533 0 3 1273 1925 224 61 2 chr4 90263481 90263987 -65366133 - RCHARR1 DNA MER1_type -94 880 345 3 1273 615 149 0 0 chr4 90263992 90264099 -65366021 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1273 342 219 137 0 chr4 90264617 90264690 -65365430 - MLT1B LTR MaLR -296 94 12 3 1273 326 219 16 0 chr4 90264750 90264814 -65365306 + PB1D9 SINE Alu 1 65 -55 3 1273 22 35 0 0 chr4 90264816 90264845 -65365275 + AT_rich Low_complexity Low_complexity 1 29 0 3 1273 3230 25 19 24 chr4 90266228 90266641 -65363479 + IAPLTR2a LTR ERVK 1 411 0 3 1273 1206 78 0 16 chr4 90266672 90266855 -65363265 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1273 252 0 0 0 chr4 90267605 90267633 -65362487 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1273 1394 145 12 12 chr4 90267635 90267928 -65362192 - Lx3B LINE L1 -5 7004 6655 3 1273 1405 190 92 22 chr4 90267950 90268267 -65361853 - RLTR24 LTR ERV1 0 529 191 3 1273 1146 108 33 22 chr4 90268292 90268472 -65361648 - B2_Mm2 SINE B2 -11 184 3 4 1273 473 139 23 11 chr4 90268490 90268577 -65361543 - RLTR24 LTR ERV1 -309 220 133 3 1273 32913 68 4 2 chr4 90268578 90273728 -65356392 + L1Md_F2 LINE L1 392 5589 -297 4 1273 7821 55 6 0 chr4 90273729 90274718 -65355402 + L1Md_F2 LINE L1 5591 6585 0 4 1273 736 165 68 0 chr4 90274718 90274851 -65355269 - RLTR24 LTR ERV1 -387 142 1 3 1273 793 31 28 78 chr4 90274878 90275019 -65355101 - L1Md_F3 LINE L1 0 6584 6451 4 1273 219 69 0 0 chr4 90275020 90275049 -65355071 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1273 537 16 0 0 chr4 90275049 90275111 -65355009 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1273 960 243 151 50 chr4 90276805 90277203 -65352917 + RMER10A LTR ERVL 2 439 -3 4 1273 689 103 0 8 chr4 90277813 90277930 -65352190 - Lx LINE L1 0 6654 6539 4 1273 21 36 0 0 chr4 90278327 90278355 -65351765 + AT_rich Low_complexity Low_complexity 1 28 0 4 1273 772 236 16 12 chr4 90278745 90278990 -65351130 + RLTR42-int LTR ERVK 1870 2115 -3407 4 1273 481 324 111 29 chr4 90279550 90279928 -65350192 + L1MC3 LINE L1 7277 7685 -100 4 1273 25 31 0 0 chr4 90280043 90280075 -65350045 + AT_rich Low_complexity Low_complexity 1 32 0 4 1273 333 62 0 0 chr4 90280433 90280481 -65349639 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1273 792 59 0 0 chr4 90280481 90280582 -65349538 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1273 321 290 58 51 chr4 90281692 90281830 -65348290 + RMER5 LTR ERV1 388 526 -8 4 1273 295 276 0 94 chr4 90282691 90282819 -65347301 + MER3 DNA MER1_type 81 196 -13 4 1273 390 21 0 0 chr4 90283282 90283329 -65346791 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1273 683 286 23 32 chr4 90283630 90283847 -65346273 + B3 SINE B2 2 216 0 4 1273 809 331 64 14 chr4 90283987 90284269 -65345851 + ORR1E LTR MaLR 58 353 -6 4 1273 1864 306 84 30 chr4 90284331 90285237 -65344883 + MTE-int LTR MaLR 88 1531 -49 4 1273 746 297 45 117 chr4 90285212 90285284 -65344836 + ORR1E LTR MaLR 85 152 -207 4 1273 1064 102 0 26 chr4 90285284 90285435 -65344685 + B1_Mus1 SINE Alu 2 148 0 4 1273 746 297 45 117 chr4 90285435 90285652 -65344468 + ORR1E LTR MaLR 153 353 -6 4 1273 664 227 15 30 chr4 90286486 90286618 -65343502 - B3 SINE B2 -6 210 81 4 1273 37 39 0 0 chr4 90286842 90286893 -65343227 + AT_rich Low_complexity Low_complexity 1 51 0 4 1273 22 0 0 0 chr4 90288142 90288164 -65341956 + AT_rich Low_complexity Low_complexity 1 22 0 4 1273 22 0 0 0 chr4 90288359 90288381 -65341739 + AT_rich Low_complexity Low_complexity 1 22 0 4 1273 519 328 15 69 chr4 90288632 90288835 -65341285 + RMER30 DNA MER1_type 9 200 -2 4 1273 21 36 0 0 chr4 90288913 90288941 -65341179 + AT_rich Low_complexity Low_complexity 1 28 0 4 1273 1333 141 15 53 chr4 90289999 90290262 -65339858 + Lx3B LINE L1 6721 6973 0 4 1273 288 0 0 0 chr4 90290273 90290305 -65339815 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1273 298 305 64 57 chr4 90290882 90291150 -65338970 - MLT2B3 LTR ERVL 0 554 202 4 1273 360 276 137 63 chr4 90291073 90291278 -65338842 - MTEa LTR MaLR -159 220 1 4 1273 3413 65 2 2 chr4 90291688 90292135 -65337985 - L1_Mus2 LINE L1 0 6566 6120 4 1273 231 36 0 0 chr4 90292135 90292163 -65337957 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1273 497 346 93 33 chr4 90292210 90292724 -65337396 + MLT1F2 LTR MaLR 9 560 0 4 1273 189 0 0 0 chr4 90292918 90292939 -65337181 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1273 672 272 32 0 chr4 90293046 90293204 -65336916 - B3 SINE B2 -45 171 9 4 1273 1802 216 111 102 chr4 90293256 90294030 -65336090 - Lx9 LINE L1 -3 7641 6861 4 1273 22 35 0 0 chr4 90294313 90294342 -65335778 + AT_rich Low_complexity Low_complexity 1 29 0 4 1273 23 0 0 0 chr4 90294483 90294506 -65335614 + AT_rich Low_complexity Low_complexity 1 23 0 4 1273 524 226 148 26 chr4 90295827 90296091 -65334029 - Lx9 LINE L1 -20 7624 7329 4 1273 189 290 0 0 chr4 90296675 90296744 -65333376 + GA-rich Low_complexity Low_complexity 6 74 0 4 1273 250 221 23 15 chr4 90296788 90296921 -65333199 + GA-rich Low_complexity Low_complexity 2 135 0 4 1273 779 31 0 10 chr4 90296921 90297020 -65333100 + (GAGAA)n Simple_repeat Simple_repeat 5 102 0 4 1273 2287 335 66 81 chr4 90297231 90297941 -65332179 - Lx8 LINE L1 -93 7380 6701 4 1273 294 29 0 0 chr4 90297941 90297976 -65332144 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 4 1273 2287 335 66 81 chr4 90297976 90298318 -65331802 - Lx8 LINE L1 -773 6700 6346 4 1273 1469 173 210 17 chr4 90298318 90298671 -65331449 + MTC LTR MaLR 1 421 0 4 1273 2287 324 64 55 chr4 90298671 90299603 -65330517 - Lx8 LINE L1 -1128 6345 5438 4 1273 947 122 0 51 chr4 90299609 90299765 -65330355 - B2_Mm2 SINE B2 -23 172 25 4 1273 735 204 73 12 chr4 90299814 90299978 -65330142 + Lx9 LINE L1 6764 6937 -707 4 1273 699 178 8 0 chr4 90299978 90300096 -65330024 - B2_Mm1t SINE B2 -69 124 6 4 1273 1283 204 48 97 chr4 90300100 90300452 -65329668 + Lx9 LINE L1 6951 7285 -359 4 1273 677 203 46 0 chr4 90300501 90300698 -65329422 + Lx9 LINE L1 7432 7637 -7 4 1273 554 369 43 28 chr4 90300727 90301009 -65329111 + B4A SINE B4 1 286 -6 4 1273 1107 290 84 41 chr4 90301227 90302109 -65328011 - Lx8 LINE L1 -915 5228 4309 4 1273 749 296 88 50 chr4 90302229 90302467 -65327653 - Lx8 LINE L1 -2129 4014 3771 4 1273 472 275 179 6 chr4 90302467 90302646 -65327474 - B3 SINE B2 -5 211 2 4 1273 749 299 96 48 chr4 90302646 90303091 -65327029 - Lx8 LINE L1 -2358 3782 3287 4 1273 210 80 19 39 chr4 90304085 90304137 -65325983 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1273 208 154 0 25 chr4 90304180 90304220 -65325900 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 4 1273 342 67 0 0 chr4 90304220 90304265 -65325855 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1273 233 292 33 11 chr4 90307129 90307219 -65322901 - L3 LINE CR1 -1051 3438 3347 4 1273 249 159 0 0 chr4 90307709 90307753 -65322367 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 4 1274 22 0 0 0 chr4 90308813 90308835 -65321285 + AT_rich Low_complexity Low_complexity 1 22 0 4 1274 194 349 103 39 chr4 90310394 90310549 -65319571 + MIRb SINE MIR 96 260 -8 4 1274 556 257 92 50 chr4 90313061 90313323 -65316797 - B4A SINE B4 -18 274 2 4 1274 850 313 35 23 chr4 90314070 90314545 -65315575 + MLT2B4 LTR ERVL 6 540 -16 4 1274 1677 282 102 4 chr4 90314997 90315478 -65314642 + MER68 LTR ERVL 9 536 -27 4 1274 323 314 60 106 chr4 90316598 90316815 -65313305 + HAL1 LINE L1 491 697 -1810 4 1274 1752 53 111 0 chr4 90317209 90317452 -65312668 - L1_Mus1 LINE L1 -436 6131 5862 4 1274 40972 15 5 6 chr4 90317488 90324695 -65305425 - L1Md_A LINE L1 0 6582 1 4 1274 1369 48 0 0 chr4 90324694 90324860 -65305260 - L1_Mus1 LINE L1 -688 5879 5714 4 1274 3140 53 9 49 chr4 90324858 90325182 -65304938 + L1_Mus1 LINE L1 6112 6424 -143 4 1274 1174 48 7 0 chr4 90325182 90325328 -65304792 - B1_Mm SINE Alu 0 147 1 4 1274 3140 53 9 49 chr4 90325328 90325435 -65304685 + L1_Mus1 LINE L1 6425 6526 -41 4 1274 35487 43 0 4 chr4 90325434 90330681 -65299439 + L1Md_T LINE L1 268 5589 -297 4 1274 8414 32 0 0 chr4 90330681 90331676 -65298444 + L1Md_T LINE L1 5590 6584 -1 4 1274 264 113 19 0 chr4 90331676 90331729 -65298391 + L1_Mus1 LINE L1 6513 6566 -1 4 1274 1079 328 80 91 chr4 90332621 90333763 -65296357 + L1M3e LINE L1 9 1137 -5893 4 1274 234 288 17 0 chr4 90333802 90333861 -65296259 + RMER15 LTR ERVL 1 60 -515 4 1274 1508 264 132 36 chr4 90333865 90334364 -65295756 + RMER15 LTR ERVL 10 556 -19 4 1274 474 324 48 76 chr4 90334383 90334817 -65295303 + L1M3e LINE L1 1638 2059 -4971 4 1274 258 385 0 40 chr4 90334915 90335064 -65295056 + RSINE1 SINE B4 4 146 -19 4 1274 311 285 81 2 chr4 90335423 90335593 -65294527 + L1M3e LINE L1 2698 2861 -4246 4 1274 220 232 43 0 chr4 90336077 90336146 -65293974 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1274 528 353 7 26 chr4 90336375 90336529 -65293591 + RSINE1 SINE B4 11 161 -4 4 1274 549 0 0 0 chr4 90336833 90336894 -65293226 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1274 3786 102 45 22 chr4 90336894 90337476 -65292644 - L1_Mus4 LINE L1 -11 6625 6031 4 1274 4507 130 1 6 chr4 90337476 90338390 -65291730 + Lx LINE L1 5112 6021 -633 4 1274 662 226 36 0 chr4 90338572 90338709 -65291411 + B1_Mus1 SINE Alu 7 148 0 4 1274 38 39 0 0 chr4 90338751 90338803 -65291317 + AT_rich Low_complexity Low_complexity 1 52 0 4 1274 313 324 28 21 chr4 90338803 90338945 -65291175 + Lx7 LINE L1 7103 7245 -451 4 1274 305 275 76 21 chr4 90339623 90339768 -65290352 - L1M3e LINE L1 -6864 166 14 4 1274 21 0 0 0 chr4 90340183 90340204 -65289916 + AT_rich Low_complexity Low_complexity 1 21 0 4 1274 3278 179 82 9 chr4 90340901 90341572 -65288548 - RMER6D LTR ERVK 0 720 1 4 1274 2330 198 47 21 chr4 90341574 90342062 -65288058 - RMER6-int LTR ERVK -2 3175 2675 4 1274 309 51 0 0 chr4 90342062 90342101 -65288019 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1274 2330 287 7 6 chr4 90342101 90342249 -65287871 - RMER6-int LTR ERVK -503 2674 2653 4 1274 22926 159 17 44 chr4 90342251 90348735 -65281385 + Lx2 LINE L1 357 6643 -354 4 1274 1136 160 18 18 chr4 90348735 90348866 -65281254 + Lx2 LINE L1 6775 6907 -90 4 1274 1019 79 7 0 chr4 90348866 90349006 -65281114 + B1_Mm SINE Alu 1 141 -6 4 1274 608 0 14 0 chr4 90349007 90349079 -65281041 + (TAAA)n Simple_repeat Simple_repeat 4 76 0 4 1274 1136 160 18 18 chr4 90349079 90349162 -65280958 + Lx2 LINE L1 6908 6991 -6 4 1274 2585 224 5 35 chr4 90349162 90349421 -65280699 - MurERV4-int LTR ERVK -417 4843 4593 4 1274 3210 46 8 2 chr4 90349421 90349815 -65280305 - MTA_Mm LTR MaLR 0 396 1 4 1274 2585 224 5 35 chr4 90349815 90350033 -65280087 - MurERV4-int LTR ERVK -668 4592 4378 4 1274 185 35 69 0 chr4 90350033 90350062 -65280058 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1274 2585 224 5 35 chr4 90350062 90350073 -65280047 - MurERV4-int LTR ERVK -883 4377 4367 4 1274 1581 150 5 148 chr4 90350073 90350457 -65279663 + ORR1A4 LTR MaLR 1 329 0 4 1274 2585 224 5 35 chr4 90350457 90350586 -65279534 - MurERV4-int LTR ERVK -894 4366 4243 4 1274 226 281 34 0 chr4 90352413 90352502 -65277618 - L1MA8 LINE L1 -35 6277 6186 4 1274 2773 38 12 3 chr4 90352502 90352841 -65277279 + ORR1A1 LTR MaLR 5 346 0 4 1274 1079 296 130 24 chr4 90352863 90353439 -65276681 - L1MA8 LINE L1 -173 6118 5486 4 1274 396 0 0 0 chr4 90353439 90353483 -65276637 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1274 1079 273 127 13 chr4 90353483 90353915 -65276205 - L1MA8 LINE L1 -806 5485 4991 4 1274 226 309 62 0 chr4 90354970 90355051 -65275069 + LTR85a LTR Gypsy? 18 103 -599 4 1274 241 311 109 15 chr4 90355147 90355284 -65274836 - MIR SINE MIR -64 198 49 4 1274 24 77 0 0 chr4 90356637 90356689 -65273431 + AT_rich Low_complexity Low_complexity 1 52 0 4 1274 3778 217 63 80 chr4 90357776 90358946 -65271174 - Lx9 LINE L1 -5 7639 6489 4 1274 1887 254 51 60 chr4 90358973 90359090 -65271030 + L1_Rod LINE L1 658 770 -6838 4 1274 1807 102 11 8 chr4 90359090 90359357 -65270763 + L1_Mus3 LINE L1 6367 6634 -4 4 1274 1887 254 51 60 chr4 90359357 90359596 -65270524 + L1_Rod LINE L1 771 1009 -6599 4 1274 3126 93 7 0 chr4 90359596 90360025 -65270095 - L1_Mus2 LINE L1 -1 6565 6134 4 1274 1887 218 133 27 chr4 90360025 90360595 -65269525 + L1_Rod LINE L1 1010 1626 -4221 4 1274 453 234 169 0 chr4 90360605 90360729 -65269391 + B1_Mur1 SINE Alu 3 147 -2 4 1274 279 0 0 0 chr4 90360925 90360956 -65269164 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1274 276 30 0 0 chr4 90360956 90360988 -65269132 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1274 258 32 0 0 chr4 90361409 90361440 -65268680 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1274 441 36 0 0 chr4 90362650 90362705 -65267415 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1274 201 161 0 0 chr4 90364805 90364836 -65265284 + (CATA)n Simple_repeat Simple_repeat 1 31 0 5 1274 349 388 26 9 chr4 90365090 90365316 -65264804 + MIR SINE MIR 2 231 -31 5 1274 571 234 211 0 chr4 90366069 90366244 -65263876 + B3 SINE B2 4 215 -1 5 1274 204 40 0 0 chr4 90366833 90366858 -65263262 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 5 1274 215 93 23 0 chr4 90366876 90366919 -65263201 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1274 372 22 0 0 chr4 90366962 90367007 -65263113 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1274 333 70 55 14 chr4 90367012 90367085 -65263035 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 5 1274 721 277 65 149 chr4 90367277 90367859 -65262261 - MT2A LTR ERVL 0 533 1 5 1274 3179 161 124 10 chr4 90367946 90368543 -65261577 - RLTR33 LTR ERVK -13 665 1 5 1274 594 246 49 16 chr4 90368998 90369214 -65260906 - MT2A LTR ERVL 0 601 356 5 1274 2629 194 0 6 chr4 90369238 90369752 -65260368 - Lx LINE L1 -1 6653 6143 5 1274 368 105 2 0 chr4 90369752 90369811 -65260309 + Lx LINE L1 6070 6122 -532 5 1274 1714 186 102 0 chr4 90369838 90370171 -65259949 + ORR1B2 LTR MaLR 1 367 0 5 1274 535 191 13 0 chr4 90370806 90370963 -65259157 + CT-rich Low_complexity Low_complexity 1 159 0 5 1274 552 214 98 15 chr4 90370963 90371096 -65259024 - B1_Mus1 SINE Alu -3 145 2 5 1274 1492 316 53 4 chr4 90371097 90371603 -65258517 - Lx9 LINE L1 -752 6892 6362 5 1274 216 0 0 0 chr4 90371628 90371652 -65258468 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 1274 368 40 20 0 chr4 90371652 90371701 -65258419 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1274 270 255 0 0 chr4 90371718 90371769 -65258351 - Lx9 LINE L1 -1097 6547 6497 5 1274 201 74 0 0 chr4 90371813 90371840 -65258280 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5 1274 337 218 0 130 chr4 90371842 90371942 -65258178 + MT2B LTR ERVL 178 264 -337 5 1274 957 65 0 0 chr4 90371853 90371977 -65258143 + B1_Mus1 SINE Alu 25 148 0 5 1274 183 42 0 0 chr4 90371977 90372001 -65258119 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 5 1274 238 375 0 0 chr4 90373550 90373630 -65256490 + MIRb SINE MIR 60 139 -129 5 1274 526 274 49 10 chr4 90374040 90374243 -65255877 - B3 SINE B2 -5 211 1 5 1274 21 0 0 0 chr4 90374493 90374514 -65255606 + AT_rich Low_complexity Low_complexity 1 21 0 5 1274 22 35 0 0 chr4 90375634 90375663 -65254457 + AT_rich Low_complexity Low_complexity 1 29 0 5 1274 192 246 85 34 chr4 90376916 90376975 -65253145 + L2 LINE L2 2313 2374 -1045 5 1274 1513 62 5 14 chr4 90377091 90377304 -65252816 + L1Md_F2 LINE L1 6367 6577 -5 5 1274 735 71 0 0 chr4 90377327 90377425 -65252695 + (GGGAA)n Simple_repeat Simple_repeat 4 101 0 5 1274 207 65 21 42 chr4 90377976 90378024 -65252096 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1274 706 193 13 46 chr4 90378024 90378176 -65251944 - B1_Mur3 SINE Alu 0 149 3 5 1274 486 278 22 29 chr4 90378177 90378314 -65251806 - B1F SINE Alu -1 148 13 5 1274 1053 147 171 49 chr4 90378431 90378569 -65251551 + Lx7 LINE L1 7376 7550 -146 5 1274 195 42 0 0 chr4 90378569 90378593 -65251527 + (TTA)n Simple_repeat Simple_repeat 1 24 0 5 1274 1053 147 171 49 chr4 90378593 90378740 -65251380 + Lx7 LINE L1 7551 7695 -1 5 1274 309 51 0 0 chr4 90378743 90378782 -65251338 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 1274 225 108 0 0 chr4 90379650 90379687 -65250433 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1274 210 250 0 13 chr4 90379693 90379770 -65250350 + (TTTG)n Simple_repeat Simple_repeat 2 77 0 5 1274 788 254 45 18 chr4 90380987 90381299 -65248821 + Lx8 LINE L1 6964 7316 -157 5 1274 450 0 0 0 chr4 90381312 90381362 -65248758 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1274 2656 73 0 0 chr4 90381566 90381910 -65248210 + L1_Mus4 LINE L1 5587 5930 -706 5 1274 2056 184 43 0 chr4 90381906 90382329 -65247791 - L1_Mur3 LINE L1 -129 5751 5311 5 1274 3424 275 79 44 chr4 90382322 90382653 -65247467 + Lx6 LINE L1 6154 6479 -981 5 1274 2138 71 14 3 chr4 90382653 90382949 -65247171 + L1_Mus2 LINE L1 6266 6564 -2 5 1274 3424 275 79 44 chr4 90382949 90383740 -65246380 + Lx6 LINE L1 6480 7316 -144 5 1274 1105 268 41 53 chr4 90384437 90384756 -65245364 - ORR1E LTR MaLR -42 317 3 5 1274 3677 40 9 0 chr4 90384875 90385322 -65244798 - L1Md_F3 LINE L1 0 6584 6134 5 1274 285 342 112 18 chr4 90385350 90385627 -65244493 - L2 LINE L2 -583 2836 2534 5 1274 269 328 69 39 chr4 90386410 90386446 -65243674 + Lx9 LINE L1 6436 6471 -1173 5 1274 686 117 0 23 chr4 90386446 90386577 -65243543 + L1_Mus4 LINE L1 6506 6633 -3 5 1274 269 328 69 39 chr4 90386577 90386670 -65243450 + Lx9 LINE L1 6472 6569 -1075 5 1274 263 28 28 0 chr4 90386682 90386718 -65243402 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1274 1234 264 128 90 chr4 90386730 90387442 -65242678 + RMER19C LTR ERVK 18 902 0 5 1274 3542 247 73 15 chr4 90387442 90388460 -65241660 + Lx9 LINE L1 6566 7642 -2 5 1274 249 109 0 0 chr4 90388888 90388934 -65241186 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 5 1274 1153 81 0 0 chr4 90388937 90389085 -65241035 - B1_Mus1 SINE Alu 0 148 1 5 1274 3560 98 28 10 chr4 90389281 90389786 -65240334 - Lx3_Mus LINE L1 -36 5850 5337 5 1274 6049 124 83 9 chr4 90389786 90390816 -65239304 + Lx3_Mus LINE L1 5883 6990 -19 5 1274 198 0 0 0 chr4 90390816 90390838 -65239282 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 5 1274 907 101 98 31 chr4 90391237 90391400 -65238720 - L1_Mus3 LINE L1 -6 6632 6459 5 1274 537 259 92 23 chr4 90391546 90391720 -65238400 - MLT1A1 LTR MaLR 0 408 223 5 1274 2230 163 42 12 chr4 90391781 90392185 -65237935 - RMER1B Other Other -3 1063 648 5 1274 1929 129 12 67 chr4 90392197 90392538 -65237582 + ORR1A4 LTR MaLR 8 329 0 5 1274 2265 224 112 36 chr4 90392540 90393100 -65237020 - RMER1B Other Other -419 647 45 5 1274 3383 95 51 2 chr4 90393166 90393236 -65236884 + Lx3_Mus LINE L1 5376 5453 -433 5 1274 558 0 0 0 chr4 90393236 90393298 -65236822 + (CCCTAA)n Simple_repeat Simple_repeat 2 63 0 5 1274 4866 90 28 5 chr4 90393298 90394117 -65236003 + Lx3_Mus LINE L1 5454 6300 -709 5 1274 562 289 75 85 chr4 90394107 90394206 -65235914 - L1MA5 LINE L1 -470 5830 5729 5 1274 623 191 229 0 chr4 90394206 90394389 -65235731 - URR1B DNA MER1_type 0 225 1 5 1274 562 289 75 85 chr4 90394389 90394506 -65235614 - L1MA5 LINE L1 -572 5728 5617 5 1274 933 90 0 0 chr4 90394506 90394639 -65235481 + (CTTTG)n Simple_repeat Simple_repeat 2 134 0 5 1274 980 132 0 0 chr4 90394639 90394775 -65235345 - B1_Mus1 SINE Alu -10 138 3 5 1274 562 297 70 76 chr4 90394775 90394979 -65235141 - L1MA5 LINE L1 -684 5616 5384 5 1274 3024 185 53 18 chr4 90396037 90396643 -65233477 - RMER20B LTR ERVK 0 627 1 5 1274 962 262 72 19 chr4 90400196 90400515 -65229605 + Lx6 LINE L1 7125 7460 0 5 1274 560 347 80 52 chr4 90400524 90401065 -65229055 + L1MEg LINE L1 1252 1807 -4277 5 1274 232 184 0 0 chr4 90401555 90401593 -65228527 - MLT1A0 LTR MaLR 0 624 587 5 1274 793 230 77 0 chr4 90401613 90401809 -65228311 - MLT1A0 LTR MaLR 0 365 155 5 1274 333 247 13 13 chr4 90401932 90402010 -65228110 - MLT1A0 LTR MaLR -207 158 81 5 1274 413 269 61 8 chr4 90402931 90403062 -65227058 + Lx7 LINE L1 7559 7696 0 5 1274 2184 121 60 6 chr4 90404826 90405175 -65224945 - Lx2B LINE L1 -1 6999 6632 5 1274 252 0 0 0 chr4 90405324 90405352 -65224768 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1274 213 154 0 0 chr4 90405607 90405646 -65224474 + CT-rich Low_complexity Low_complexity 3 41 0 5 1274 436 306 0 34 chr4 90405652 90405801 -65224319 - B1_Mur1 SINE Alu -5 144 1 5 1274 4532 106 48 9 chr4 90406159 90406771 -65223349 + Lx LINE L1 5945 6554 -100 5 1274 195 42 0 0 chr4 90406771 90406795 -65223325 + (AGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1274 4532 106 48 9 chr4 90406795 90406865 -65223255 + Lx LINE L1 6555 6653 -1 5 1274 840 262 0 11 chr4 90406890 90407064 -65223056 + MTC LTR MaLR 196 367 -54 5 1274 1213 248 82 34 chr4 90407078 90407516 -65222604 + Lx9 LINE L1 7059 7517 -127 5 1274 375 227 84 39 chr4 90407514 90407693 -65222427 + Lx9 LINE L1 7458 7644 0 5 1274 22 56 0 0 chr4 90408020 90408056 -65222064 + AT_rich Low_complexity Low_complexity 1 36 0 5 1274 184 224 15 15 chr4 90409087 90409155 -65220965 + GA-rich Low_complexity Low_complexity 1 68 0 5 1274 577 306 97 33 chr4 90409686 90410354 -65219766 - L1MA4A LINE L1 -1607 6089 5417 5 1274 959 221 20 0 chr4 90411534 90411729 -65218391 + Lx7 LINE L1 6807 7005 -691 5 1274 971 343 36 57 chr4 90411749 90412243 -65217877 - Lx5 LINE L1 -88 6962 6479 5 1274 671 308 42 45 chr4 90412240 90412529 -65217591 - Lx5 LINE L1 -687 6363 6076 5 1274 1154 289 14 46 chr4 90412849 90413216 -65216904 - ORR1E LTR MaLR -2 357 3 5 1274 204 308 15 15 chr4 90413295 90413361 -65216759 + MIR SINE MIR 152 217 -45 5 1274 1965 244 103 65 chr4 90413558 90414186 -65215934 + Lx7 LINE L1 6957 7603 -93 5 1274 270 0 0 0 chr4 90414186 90414216 -65215904 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1274 1965 242 106 66 chr4 90414216 90414284 -65215836 + Lx7 LINE L1 7604 7692 -4 5 1274 23 0 0 0 chr4 90414284 90414307 -65215813 + AT_rich Low_complexity Low_complexity 1 23 0 5 1274 242 272 31 52 chr4 90414986 90415083 -65215037 - L2a LINE L2 -10 3416 3322 5 1274 5451 198 50 35 chr4 90415557 90416772 -65213348 + Lx4B LINE L1 5805 7038 -20 5 1274 351 0 0 0 chr4 90416790 90416829 -65213291 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1274 794 167 0 22 chr4 90416835 90417019 -65213101 + GA-rich Low_complexity Low_complexity 1 180 0 5 1274 552 335 56 97 chr4 90417273 90417613 -65212507 - ORR1E LTR MaLR -3 356 31 5 1274 195 318 56 45 chr4 90417615 90417704 -65212416 - MER5A DNA MER1_type -50 139 50 5 1274 300 320 39 54 chr4 90417942 90418071 -65212049 - RMER15 LTR ERVL -43 532 406 5 1274 297 75 0 0 chr4 90418567 90418607 -65211513 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1274 429 129 0 0 chr4 90418689 90418759 -65211361 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 6 1274 2632 83 6 8 chr4 90421921 90422286 -65207834 - L1_Mus3 LINE L1 -1 6637 6274 6 1274 564 290 100 38 chr4 90422527 90422817 -65207303 - L1M2 LINE L1 -598 5714 5407 6 1274 428 282 51 13 chr4 90422818 90422976 -65207144 + Lx9 LINE L1 7254 7417 -227 6 1274 498 125 0 0 chr4 90422978 90423058 -65207062 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1274 2780 130 21 27 chr4 90423195 90423671 -65206449 - Lx LINE L1 -1 6653 6181 6 1274 31 26 0 0 chr4 90423736 90423774 -65206346 + AT_rich Low_complexity Low_complexity 1 38 0 6 1274 228 240 215 44 chr4 90423835 90423970 -65206150 + RMER15 LTR ERVL 3 160 -415 6 1274 245 267 111 0 chr4 90424025 90424115 -65206005 + RMER15 LTR ERVL 347 446 -129 6 1274 258 277 151 26 chr4 90424159 90424311 -65205809 + RMER15 LTR ERVL 405 575 0 6 1274 504 194 0 0 chr4 90424681 90424805 -65205315 + (CA)n Simple_repeat Simple_repeat 1 124 0 6 1274 606 68 0 0 chr4 90425357 90425445 -65204675 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1274 324 356 39 0 chr4 90425447 90425551 -65204569 - RSINE1 SINE B4 -16 149 42 6 1274 315 0 0 0 chr4 90426477 90426512 -65203608 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1274 910 360 46 7 chr4 90426723 90427184 -65202936 - Lx8 LINE L1 -280 7193 6715 6 1274 24 53 0 0 chr4 90427189 90427227 -65202893 + AT_rich Low_complexity Low_complexity 1 38 0 6 1274 1148 93 0 6 chr4 90427229 90427391 -65202729 + B2_Mm2 SINE B2 2 162 -33 6 1274 378 0 0 0 chr4 90427393 90427435 -65202685 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1274 439 192 57 16 chr4 90427448 90427570 -65202550 - Lx9 LINE L1 -22 7622 7496 6 1274 1747 257 25 2 chr4 90427622 90428024 -65202096 - Lx8 LINE L1 -826 6647 6237 6 1274 3522 18 0 0 chr4 90428074 90428470 -65201650 - MTA_Mm LTR MaLR 0 396 1 6 1274 6328 43 13 9 chr4 90428470 90429308 -65200812 - MTA_Mm-int LTR MaLR 0 1098 258 6 1274 256 263 7 31 chr4 90429712 90429783 -65200337 + MTE2a LTR MaLR 279 349 -30 6 1274 192 125 0 0 chr4 90431125 90431157 -65198963 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 1274 235 239 0 53 chr4 90431799 90431874 -65198246 - MLT1A1 LTR MaLR -159 249 179 6 1274 183 139 0 0 chr4 90432207 90432243 -65197877 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1274 282 323 0 42 chr4 90432431 90432596 -65197524 + L1ME4a LINE L1 5770 5927 -197 6 1274 189 0 0 0 chr4 90433099 90433120 -65197000 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1274 2358 171 12 10 chr4 90433360 90433778 -65196342 + MTC LTR MaLR 3 421 0 6 1274 272 120 20 0 chr4 90434444 90434494 -65195626 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1274 626 216 0 0 chr4 90435627 90435743 -65194377 + B3 SINE B2 5 120 -96 6 1274 5156 57 0 0 chr4 90435760 90436396 -65193724 + L1_Mus1 LINE L1 5931 6566 -1 6 1274 3895 79 64 14 chr4 90436424 90436974 -65193146 + L1_Mus2 LINE L1 5990 6566 0 6 1274 218 281 233 11 chr4 90437312 90437402 -65192718 - PB1D10 SINE Alu -7 110 1 6 1274 180 0 0 0 chr4 90437646 90437666 -65192454 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1274 1015 83 14 20 chr4 90438114 90438262 -65191858 - B1_Mus1 SINE Alu 0 148 2 6 1274 1278 242 25 114 chr4 90438462 90438821 -65191299 + MTD LTR MaLR 1 327 -92 6 1274 2156 264 82 99 chr4 90438831 90439549 -65190571 + MTD-int LTR MaLR 415 1117 -141 6 159 4587 42 2 5 chr4 90439549 90440117 -65190003 - L1Md_F2 LINE L1 -2 6580 6015 6 1275 2156 264 82 99 chr4 90440117 90440257 -65189863 + MTD-int LTR MaLR 1118 1258 0 6 1275 413 317 14 0 chr4 90440257 90440399 -65189721 + MTD LTR MaLR 1 144 -275 6 1275 565 256 28 49 chr4 90440508 90440652 -65189468 - MTEa LTR MaLR -187 192 52 6 1275 5230 226 33 50 chr4 90440665 90441958 -65188162 + Lx7 LINE L1 6242 7512 -184 6 1275 511 199 23 15 chr4 90442062 90442195 -65187925 + Lx7 LINE L1 7563 7696 0 6 1275 25 95 0 0 chr4 90442468 90442542 -65187578 + AT_rich Low_complexity Low_complexity 1 74 0 6 1275 812 244 25 15 chr4 90443237 90443441 -65186679 - B3 SINE B2 -10 206 1 6 1275 29 28 0 0 chr4 90444155 90444191 -65185929 + AT_rich Low_complexity Low_complexity 1 36 0 6 1275 21 0 0 0 chr4 90445999 90446020 -65184100 + AT_rich Low_complexity Low_complexity 1 21 0 6 1275 182 65 0 61 chr4 90447642 90447675 -65182445 + (TCC)n Simple_repeat Simple_repeat 3 33 0 6 1275 668 379 50 10 chr4 90447867 90448269 -65181851 + Lx8 LINE L1 6779 7196 -277 6 1275 1596 219 59 6 chr4 90448282 90448640 -65181480 - ORR1B1 LTR MaLR -17 377 1 6 1275 828 168 17 38 chr4 90449997 90450289 -65179831 + (TATATG)n Simple_repeat Simple_repeat 1 285 0 6 1275 790 381 63 11 chr4 90451043 90451391 -65178729 - LTR16B LTR ERVL -93 370 5 6 1275 2470 136 29 21 chr4 90451997 90452417 -65177703 - Lx2B LINE L1 -24 6976 6554 6 1275 22 80 0 0 chr4 90453402 90453452 -65176668 + AT_rich Low_complexity Low_complexity 1 50 0 6 1275 270 0 0 0 chr4 90454849 90454879 -65175241 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1275 2233 271 65 59 chr4 90456122 90456366 -65173754 - MTD-int LTR MaLR -433 825 606 6 1275 2175 102 15 58 chr4 90456366 90456708 -65173412 - ORR1A2 LTR MaLR 0 327 1 6 1275 9976 148 69 10 chr4 90456708 90458561 -65171559 - ORR1A2-int LTR MaLR 0 1963 1 6 1275 2233 271 65 59 chr4 90458561 90459134 -65170986 - MTD-int LTR MaLR -653 605 3 6 1275 1033 242 235 6 chr4 90459136 90459477 -65170643 - MTD LTR MaLR 0 419 1 6 1275 419 327 100 0 chr4 90459517 90459667 -65170453 - Lx9 LINE L1 -1122 6522 6358 6 1275 351 0 0 0 chr4 90459684 90459723 -65170397 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1275 1253 272 101 105 chr4 90459729 90460431 -65169689 + Lx9 LINE L1 6926 7624 -20 6 1275 440 312 6 67 chr4 90460625 90460645 -65169475 - RSINE1 SINE B4 0 165 146 6 1275 428 62 16 0 chr4 90460645 90460709 -65169411 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 6 1275 440 312 6 67 chr4 90460709 90460853 -65169267 - RSINE1 SINE B4 -20 145 11 6 1275 34 24 0 0 chr4 90461420 90461461 -65168659 + AT_rich Low_complexity Low_complexity 1 41 0 6 1275 609 52 0 0 chr4 90461481 90461558 -65168562 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1275 5608 231 138 17 chr4 90461736 90463681 -65166439 - Lx7 LINE L1 -1598 6098 3916 6 1275 301 283 24 24 chr4 90463776 90463906 -65166214 + GA-rich Low_complexity Low_complexity 1 130 0 6 1275 186 308 0 30 chr4 90464481 90464548 -65165572 - MER5B DNA MER1_type -18 160 96 6 1275 355 276 31 0 chr4 90464788 90464886 -65165234 + MIRb SINE MIR 47 147 -121 6 1275 232 286 55 37 chr4 90466336 90466445 -65163675 + Lx8 LINE L1 7359 7469 -4 6 1275 361 208 0 27 chr4 90466870 90466944 -65163176 - Lx9 LINE L1 -451 7193 7122 6 1275 396 0 0 0 chr4 90467382 90467426 -65162694 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1275 386 159 10 21 chr4 90467457 90467553 -65162567 + Lx9 LINE L1 7543 7637 -7 6 1275 315 392 85 57 chr4 90467764 90468045 -65162075 + LTR78 LTR ERV1 877 1165 -139 6 1275 234 0 0 0 chr4 90468394 90468420 -65161700 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1275 1300 61 6 6 chr4 90468528 90468708 -65161412 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1275 317 315 96 77 chr4 90470196 90470416 -65159704 + MTEa LTR MaLR 1 224 -155 6 1275 431 322 51 38 chr4 90473431 90473589 -65156531 + RSINE1 SINE B4 6 165 0 6 1275 26 50 0 0 chr4 90473950 90473990 -65156130 + AT_rich Low_complexity Low_complexity 1 40 0 6 1275 249 83 0 0 chr4 90474259 90474295 -65155825 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1275 481 300 96 3 chr4 90474317 90474609 -65155511 + ORR1D2 LTR MaLR 1 370 0 6 1275 416 283 94 65 chr4 90474661 90474831 -65155289 + B3 SINE B2 2 176 -19 6 1275 369 313 37 33 chr4 90474855 90475032 -65155088 + B4 SINE B4 4 171 -121 6 1275 696 272 193 12 chr4 90475347 90476027 -65154093 + L1M5 LINE L1 3805 4607 -1539 6 1275 627 409 78 14 chr4 90476424 90477167 -65152953 + L1M2a LINE L1 883 1673 -5495 6 1275 237 380 25 0 chr4 90477216 90477337 -65152783 + L1M2a LINE L1 1764 1887 -5281 6 1275 29 60 0 0 chr4 90477591 90477641 -65152479 + AT_rich Low_complexity Low_complexity 1 50 0 6 1275 581 186 16 0 chr4 90477804 90477928 -65152192 + Lx9 LINE L1 7512 7637 -7 6 1275 1242 66 0 19 chr4 90478041 90478206 -65151914 + L1_Mus1 LINE L1 5549 5714 -169 6 1275 3845 72 0 10 chr4 90478206 90478723 -65151397 + L1Md_F2 LINE L1 6071 6582 0 6 1275 6685 77 17 28 chr4 90478723 90479673 -65150447 + L1_Mus1 LINE L1 5698 6567 0 6 1275 571 301 88 31 chr4 90479669 90479909 -65150211 + L1M2c LINE L1 1724 1980 -4869 6 1275 3197 51 10 129 chr4 90479909 90480404 -65149716 - RLTR10C LTR ERVK 0 436 1 6 1275 571 307 102 24 chr4 90480404 90480903 -65149217 + L1M2c LINE L1 1981 2522 -4327 6 1275 2573 248 24 66 chr4 90481344 90481636 -65148484 + Lx9 LINE L1 5093 5342 -505 6 1275 2853 156 27 23 chr4 90481636 90482148 -65147972 + Lx2B LINE L1 6484 6997 -3 6 1275 2573 253 26 60 chr4 90482148 90482714 -65147406 + Lx9 LINE L1 5343 5957 -1687 6 1275 220 109 65 0 chr4 90482923 90482969 -65147151 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1275 541 0 29 0 chr4 90482976 90483045 -65147075 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 1275 573 289 45 12 chr4 90483332 90483577 -65146543 + L1M2c LINE L1 2825 3077 -3768 6 1275 683 265 12 0 chr4 90483599 90483769 -65146351 + Lx8 LINE L1 6791 6962 -511 6 1275 400 337 70 10 chr4 90484203 90484404 -65145716 + Lx8 LINE L1 6962 7174 -299 6 1275 302 61 0 0 chr4 90484649 90484698 -65145422 + L1_Mus4 LINE L1 6582 6630 -6 6 1275 577 175 30 0 chr4 90484723 90484889 -65145231 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 1275 439 298 115 23 chr4 90485063 90485324 -65144796 + L1MB4 LINE L1 4910 5194 -952 6 1275 22 35 0 0 chr4 90485489 90485518 -65144602 + AT_rich Low_complexity Low_complexity 1 29 0 6 1275 715 297 62 21 chr4 90485542 90486137 -65143983 + L1MB4 LINE L1 5223 5873 -307 6 1275 2735 258 47 21 chr4 90486146 90487237 -65142883 + L1_Mur3 LINE L1 23 910 -6802 6 1275 369 263 97 59 chr4 90487247 90487528 -65142592 + L1VL1 LINE L1 36 489 -5929 6 1275 334 296 17 9 chr4 90487546 90487662 -65142458 + L1Md_F LINE L1 675 791 -5825 6 1275 25959 117 26 22 chr4 90487663 90492348 -65137772 + L1Md_F LINE L1 708 5394 -489 6 1275 4433 168 79 8 chr4 90492345 90492999 -65137121 + L1_Mur3 LINE L1 1370 2059 -3821 6 1275 477 34 0 0 chr4 90492999 90493058 -65137062 + (CCA)n Simple_repeat Simple_repeat 1 59 0 6 1275 4433 168 79 8 chr4 90493058 90493406 -65136714 + L1_Mur3 LINE L1 2060 2442 -3438 6 1275 2189 223 45 22 chr4 90493427 90493960 -65136160 + Lx6 LINE L1 5587 6131 -1329 6 1275 493 237 71 186 chr4 90493960 90494140 -65135980 - RLTR21 LTR ERVK 0 1404 1252 6 1275 1401 38 0 0 chr4 90494140 90494428 -65135692 + (CA)n Simple_repeat Simple_repeat 1 288 0 7 1275 4511 169 43 48 chr4 90494428 90495400 -65134720 - RLTR21 LTR ERVK -153 1251 178 6 1275 937 264 22 36 chr4 90495385 90495609 -65134511 + RLTR21 LTR ERVK 37 257 -1315 7 1275 3434 221 50 18 chr4 90495609 90496349 -65133771 + Lx6 LINE L1 6697 7460 0 6 1275 256 330 33 0 chr4 90496498 90496589 -65133531 + L1MB7 LINE L1 5994 6087 -97 7 1275 450 0 0 0 chr4 90496610 90496660 -65133460 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1275 4006 30 5 0 chr4 90496707 90497336 -65132784 - L1Md_F2 LINE L1 -510 6072 5441 7 1275 3831 41 13 6 chr4 90497336 90497804 -65132316 + L1Md_F2 LINE L1 6099 6569 -13 7 1275 478 320 104 43 chr4 90497895 90498250 -65131870 + L1ME3A LINE L1 5544 5930 -243 7 1275 6576 32 0 3 chr4 90498250 90499028 -65131092 + L1Md_T LINE L1 5800 6575 -7 7 1275 478 320 104 43 chr4 90499028 90499259 -65130861 + L1ME3A LINE L1 5931 6166 -7 7 1275 228 86 0 0 chr4 90499723 90499758 -65130362 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1275 195 42 0 0 chr4 90499758 90499782 -65130338 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1275 447 93 11 34 chr4 90499889 90499978 -65130142 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 7 1275 1270 263 71 27 chr4 90500002 90500452 -65129668 - Lx9 LINE L1 -188 7456 6987 1 1275 1049 237 71 50 chr4 90500468 90500930 -65129190 + Lx9 LINE L1 5627 6098 -1546 2 1275 23 54 0 0 chr4 90501261 90501298 -65128822 + AT_rich Low_complexity Low_complexity 1 37 0 3 1275 797 305 50 0 chr4 90502541 90502741 -65127379 - ID_B1 SINE B4 -8 216 7 4 1275 426 276 15 38 chr4 90502764 90502896 -65127224 - B1_Mur2 SINE Alu -19 130 2 5 1275 236 30 30 0 chr4 90503025 90503058 -65127062 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1275 22 35 0 0 chr4 90503103 90503132 -65126988 + AT_rich Low_complexity Low_complexity 1 29 0 7 1275 182 62 31 0 chr4 90503154 90503186 -65126934 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 8 1275 342 255 0 41 chr4 90503213 90503311 -65126809 - Lx7 LINE L1 -421 7275 7182 9 1275 458 254 114 42 chr4 90503600 90503793 -65126327 - MTD LTR MaLR -14 405 199 1 1275 181 30 0 83 chr4 90503820 90503856 -65126264 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1 1275 604 60 150 0 chr4 90503872 90503972 -65126148 - Lx3A LINE L1 -5 6976 6862 1 1275 326 274 85 39 chr4 90504026 90504155 -65125965 - MTD LTR MaLR -284 135 1 1 1275 2286 102 9 12 chr4 90504197 90504532 -65125588 + Lx3_Mus LINE L1 6665 7000 -9 1 1275 348 24 0 0 chr4 90504532 90504573 -65125547 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 1 1275 505 314 52 36 chr4 90505406 90505598 -65124522 + MLT1A1 LTR MaLR 210 404 -4 1 1275 193 274 48 0 chr4 90505692 90505754 -65124366 + MIR SINE MIR 101 165 -97 1 1275 352 176 10 10 chr4 90507107 90507210 -65122910 + GA-rich Low_complexity Low_complexity 2 104 0 1 1275 245 300 9 18 chr4 90507254 90507366 -65122754 + GA-rich Low_complexity Low_complexity 2 112 0 1 1275 2830 224 111 29 chr4 90508000 90508666 -65121454 - Lx9 LINE L1 -24 7620 6910 1 1275 549 0 0 0 chr4 90508666 90508727 -65121393 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1275 2830 224 111 29 chr4 90508727 90508964 -65121156 - Lx9 LINE L1 -735 6909 6643 1 1275 401 0 20 0 chr4 90508971 90509020 -65121100 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1275 517 300 136 43 chr4 90510007 90510601 -65119519 - Lx9 LINE L1 -22 7622 6974 2 1275 202 225 0 0 chr4 90510622 90510662 -65119458 + (CATA)n Simple_repeat Simple_repeat 1 40 0 2 1275 1543 300 49 12 chr4 90510674 90510710 -65119410 + Lx9 LINE L1 6358 6393 -1251 2 1275 656 24 24 0 chr4 90510710 90510795 -65119325 + (AAATG)n Simple_repeat Simple_repeat 3 89 0 2 1275 1543 300 49 12 chr4 90510795 90511325 -65118795 + Lx9 LINE L1 6394 6945 -699 2 1275 386 244 12 0 chr4 90511360 90511442 -65118678 + RCHARR1 DNA MER1_type 892 974 0 2 1275 274 300 0 14 chr4 90511945 90512016 -65118104 - MTEb LTR MaLR -16 363 294 2 1275 419 100 0 0 chr4 90512360 90512420 -65117700 + L1Md_F2 LINE L1 5527 5586 -297 2 1275 7751 52 8 9 chr4 90512420 90513402 -65116718 + L1Md_F2 LINE L1 5590 6570 -12 2 1275 448 185 185 0 chr4 90513715 90513888 -65116232 + Lx9 LINE L1 7438 7642 -2 2 1275 5538 107 75 1 chr4 90514575 90515416 -65114704 + Lx2A LINE L1 6099 7001 -7 2 1275 23 68 0 0 chr4 90515908 90515952 -65114168 + AT_rich Low_complexity Low_complexity 1 44 0 3 1275 1535 341 113 43 chr4 90516378 90517860 -65112260 + Lx8 LINE L1 5858 7443 -30 3 1275 597 14 0 0 chr4 90518177 90518247 -65111873 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1275 387 0 0 0 chr4 90518247 90518289 -65111831 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1275 1702 263 101 46 chr4 90519329 90520179 -65109941 + Lx9 LINE L1 6748 7644 0 3 1275 21 36 0 0 chr4 90520563 90520591 -65109529 + AT_rich Low_complexity Low_complexity 1 28 0 3 1275 294 346 60 23 chr4 90520658 90520791 -65109329 + ID_B1 SINE B4 80 217 -7 3 1275 248 296 14 155 chr4 90520843 90520991 -65109129 + MT2B2 LTR ERVL 126 252 -332 3 1275 464 239 26 26 chr4 90520915 90521031 -65109089 + ID_B1 SINE B4 102 217 -7 3 1275 594 316 26 0 chr4 90521050 90521240 -65108880 - Lx8 LINE L1 -278 7195 7001 3 1275 741 263 216 54 chr4 90521297 90521540 -65108580 + MTD LTR MaLR 8 314 -105 4 1275 1326 100 0 6 chr4 90521540 90521721 -65108399 + B2_Mm2 SINE B2 2 181 -14 4 1275 741 263 216 54 chr4 90521721 90521811 -65108309 + MTD LTR MaLR 315 395 -24 4 1275 320 262 161 31 chr4 90522493 90522753 -65107367 + L1M4b LINE L1 1261 1554 -5780 4 1275 435 317 131 46 chr4 90522774 90523299 -65106821 + L1M4b LINE L1 1595 2164 -5170 4 1275 322 291 200 38 chr4 90524517 90525001 -65105119 + L1M4b LINE L1 4624 5190 -1816 4 1275 983 101 118 6 chr4 90525080 90525250 -65104870 + B2_Mm2 SINE B2 1 189 -6 4 1275 500 304 132 20 chr4 90525260 90525807 -65104313 + L1M4b LINE L1 5306 5913 -1093 4 1275 381 289 25 110 chr4 90525876 90526121 -65103999 + L1M4b LINE L1 5927 6150 -856 4 1275 2710 79 11 11 chr4 90526410 90526814 -65103306 + L1Md_F2 LINE L1 6192 6582 0 4 1275 255 31 0 0 chr4 90527083 90527115 -65103005 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1275 1372 232 97 33 chr4 90528808 90529169 -65100951 - MTD LTR MaLR 0 419 36 4 1275 430 324 0 0 chr4 90529290 90529398 -65100722 - PB1D10 SINE Alu -9 108 1 4 1275 242 357 16 0 chr4 90530203 90530329 -65099791 - L2 LINE L2 -810 2609 2482 4 1275 242 333 42 34 chr4 90530410 90530528 -65099592 - L2 LINE L2 -954 2465 2347 4 1275 522 46 0 0 chr4 90530724 90530789 -65099331 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1275 243 0 0 0 chr4 90532276 90532303 -65097817 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1275 566 284 81 65 chr4 90533644 90533961 -65096159 - MLT1A0 LTR MaLR -5 403 31 5 1275 985 283 90 18 chr4 90533972 90534307 -65095813 - ORR1E LTR MaLR 0 359 1 5 1275 618 14 0 0 chr4 90534338 90534409 -65095711 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1275 1556 237 79 15 chr4 90535629 90536023 -65094097 + MTD LTR MaLR 1 419 0 5 1275 3735 249 58 34 chr4 90536024 90537022 -65093098 + MTD-int LTR MaLR 2 1023 -235 5 1275 1455 154 28 55 chr4 90538495 90538784 -65091336 + Lx3B LINE L1 6692 6972 -1 5 1275 1146 331 71 20 chr4 90539462 90540193 -65089927 - Lx8 LINE L1 -274 7199 6432 5 1275 381 320 75 108 chr4 90540435 90540859 -65089261 - RMER10A LTR ERVL -15 427 18 5 1275 510 180 20 10 chr4 90541135 90541236 -65088884 + RLTR17 LTR ERVK 1 102 -590 5 1275 2382 62 0 29 chr4 90541264 90541580 -65088540 - L1_Mus1 LINE L1 0 6567 6261 5 1275 1934 139 241 30 chr4 90541693 90542161 -65087959 + RLTR6_Mm LTR ERV1 37 603 -51 6 1275 49628 30 22 0 chr4 90542162 90548364 -65081756 + RLTR6-int LTR ERV1 1 6338 -1440 6 1275 8436 29 1 3 chr4 90548357 90549383 -65080737 + RLTR6-int LTR ERV1 6755 7778 0 6 1275 1925 132 250 31 chr4 90549496 90549948 -65080172 + RLTR6_Mm LTR ERV1 37 587 -67 6 1275 1359 99 10 0 chr4 90549948 90550140 -65079980 - L1_Mus1 LINE L1 -306 6261 6068 5 1275 953 279 44 1 chr4 90550150 90550536 -65079584 - L1_Mur3 LINE L1 -1994 3889 3491 6 1275 228 152 0 0 chr4 90550528 90550574 -65079546 - Lx4B LINE L1 -367 6691 6646 6 1275 3439 176 18 11 chr4 90550600 90551305 -65078815 - L1_Mur2 LINE L1 -1422 4455 3746 6 1275 579 261 152 21 chr4 90551349 90551594 -65078526 + RLTR10A LTR ERVK 114 411 0 6 1275 198 0 0 0 chr4 90551647 90551669 -65078451 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1275 443 146 730 26 chr4 90551703 90551840 -65078280 - Lx4B LINE L1 -57 7001 6765 6 1275 396 0 0 0 chr4 90551840 90551884 -65078236 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1275 432 198 8 38 chr4 90551884 90552006 -65078114 - Lx4B LINE L1 -294 6764 6662 6 1275 5600 202 100 15 chr4 90552006 90552229 -65077891 - L1_Mur2 LINE L1 -2164 3713 3486 6 1275 306 73 0 0 chr4 90552229 90552270 -65077850 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 6 1275 5600 202 100 15 chr4 90552270 90553601 -65076519 - L1_Mur2 LINE L1 -2392 3485 2029 6 1275 2536 222 55 12 chr4 90555175 90555762 -65074358 + Lx9 LINE L1 6373 6984 -660 7 1275 2055 242 29 62 chr4 90555762 90556322 -65073798 + RLTR20A LTR ERVK 1 541 0 7 1275 1218 244 11 18 chr4 90556322 90556594 -65073526 + Lx9 LINE L1 6979 7248 -396 7 1275 1549 201 20 0 chr4 90556594 90556897 -65073223 - RLTR12A LTR ERVK 0 568 260 7 1275 510 53 63 0 chr4 90556956 90557051 -65073069 + (TC)n Simple_repeat Simple_repeat 2 102 0 7 1275 252 0 0 0 chr4 90557413 90557441 -65072679 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1275 426 39 0 0 chr4 90557441 90557493 -65072627 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1275 372 243 38 28 chr4 90557508 90557614 -65072506 + MTC LTR MaLR 303 409 -12 7 1275 534 262 58 21 chr4 90557801 90557992 -65072128 - RCHARR1 DNA MER1_type -15 959 762 7 1275 32 26 0 0 chr4 90558044 90558083 -65072037 + AT_rich Low_complexity Low_complexity 1 39 0 7 1275 1092 230 48 30 chr4 90558083 90558419 -65071701 + Lx7 LINE L1 7355 7696 0 7 1275 353 308 51 0 chr4 90558660 90558777 -65071343 - Lx8 LINE L1 -175 7298 7176 8 1275 1766 213 90 8 chr4 90558846 90559224 -65070896 - MTC LTR MaLR -12 409 1 8 1275 2363 296 28 41 chr4 90559301 90559391 -65070729 - Lx8 LINE L1 -383 7090 7006 8 1275 1244 97 17 0 chr4 90559391 90559566 -65070554 - B2_Mm1t SINE B2 -14 179 2 8 1275 2363 296 28 41 chr4 90559566 90560228 -65069892 - Lx8 LINE L1 -468 7005 6348 8 1275 247 238 0 0 chr4 90560258 90560321 -65069799 - L1_Mur3 LINE L1 -424 5456 5394 8 1275 328 257 148 39 chr4 90560326 90560508 -65069612 - Lx8 LINE L1 0 7473 7272 8 1275 481 258 25 142 chr4 90560506 90560859 -65069261 - L1_Rod LINE L1 -479 5368 5057 8 1275 236 243 0 0 chr4 90560860 90560934 -65069186 - L1_Rod LINE L1 -2486 3394 3321 8 1275 1069 181 21 81 chr4 90561963 90562198 -65067922 + URR1B DNA MER1_type 5 225 0 8 1275 298 305 75 14 chr4 90564206 90564419 -65065701 - L1ME2 LINE L1 -50 6114 5889 8 1275 2393 320 98 41 chr4 90564895 90565893 -65064227 - Lx8 LINE L1 -83 7390 6303 8 1275 2271 106 20 17 chr4 90565893 90566249 -65063871 + IAPEY2_LTR LTR ERVK 1 357 0 8 1275 2393 325 52 42 chr4 90566249 90566378 -65063742 - Lx8 LINE L1 -1170 6303 6190 8 1275 936 199 124 0 chr4 90566378 90566579 -65063541 + URR1A DNA MER1_type 1 226 0 9 1275 2393 325 52 32 chr4 90566579 90567203 -65062917 - Lx8 LINE L1 -1284 6189 5589 8 1275 1415 213 71 29 chr4 90567222 90567672 -65062448 - L1_Mur3 LINE L1 -1731 4149 3681 9 1275 318 223 85 0 chr4 90567673 90567767 -65062353 - L1_Mur3 LINE L1 -2564 3316 3215 9 1275 510 289 133 16 chr4 90568442 90568751 -65061369 + Lx9 LINE L1 7300 7644 0 9 1275 327 321 64 0 chr4 90569112 90569252 -65060868 + L1M2 LINE L1 2361 2509 -4340 9 1275 499 304 224 33 chr4 90569429 90569857 -65060263 + L1M3 LINE L1 2689 3198 -2948 9 1275 663 188 17 0 chr4 90569863 90570039 -65060081 + GA-rich Low_complexity Low_complexity 2 180 0 9 159 1099 283 101 32 chr4 90570039 90570831 -65059289 + L1M3 LINE L1 3229 4075 -2065 9 1276 333 0 0 0 chr4 90570831 90570868 -65059252 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 9 1276 653 265 28 35 chr4 90570868 90571095 -65059025 + Lx4B LINE L1 6738 7049 -9 9 1276 669 315 92 47 chr4 90571111 90571432 -65058688 + L1M3 LINE L1 4080 4410 -1730 9 1276 2386 73 3 0 chr4 90571432 90571745 -65058375 + L1_Mus2 LINE L1 6253 6566 0 9 1276 669 315 92 47 chr4 90571745 90572219 -65057901 + L1M3 LINE L1 4411 4911 -1229 9 1276 262 280 99 52 chr4 90572410 90572621 -65057499 + L1M3 LINE L1 5161 5381 -762 9 1276 30 59 0 0 chr4 90572644 90572695 -65057425 + AT_rich Low_complexity Low_complexity 1 51 0 9 1276 180 77 0 0 chr4 90573810 90573836 -65056284 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1276 843 310 71 38 chr4 90573919 90574285 -65055835 - MTEb LTR MaLR 0 379 2 1 1276 218 105 26 0 chr4 90574346 90574384 -65055736 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1276 1785 86 75 0 chr4 90574757 90575024 -65055096 + Lx3A LINE L1 6688 6974 -7 1 1276 26 0 0 0 chr4 90575026 90575052 -65055068 + AT_rich Low_complexity Low_complexity 1 26 0 1 1276 21 0 0 0 chr4 90575108 90575129 -65054991 + AT_rich Low_complexity Low_complexity 1 21 0 1 1276 889 360 47 5 chr4 90575994 90576401 -65053719 - MER54A LTR ERVL -474 427 4 1 1276 1968 148 3 3 chr4 90577163 90577474 -65052646 - RLTR10E LTR ERVK 0 311 1 1 1276 1659 238 10 34 chr4 90577687 90578070 -65052050 - ORR1D1 LTR MaLR 0 374 1 1 1276 535 284 57 15 chr4 90578338 90578506 -65051614 + ID_B1 SINE B4 2 180 -112 1 1276 226 156 0 43 chr4 90578519 90578566 -65051554 + GA-rich Low_complexity Low_complexity 2 46 0 1 1276 334 356 104 19 chr4 90578566 90578778 -65051342 + L1MCb LINE L1 230 459 -5586 1 1276 203 0 37 0 chr4 90579010 90579037 -65051083 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1276 234 293 50 71 chr4 90579168 90579267 -65050853 - RLTR28B LTR ERVL -252 229 133 1 1276 226 277 48 36 chr4 90579472 90579637 -65050483 + L1MCb LINE L1 1654 1820 -4840 1 1276 1177 62 7 0 chr4 90579665 90579811 -65050309 + B1_Mus2 SINE Alu 1 147 0 1 1276 405 0 0 0 chr4 90579812 90579857 -65050263 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1276 1117 275 24 11 chr4 90579871 90580158 -65049962 + B4 SINE B4 2 292 0 1 1276 241 295 77 10 chr4 90580457 90580652 -65049468 + L1MCb LINE L1 1936 2143 -4608 1 1276 340 317 94 65 chr4 90580668 90581322 -65048798 + L1MCb LINE L1 2201 2875 -3689 1 1276 354 23 0 0 chr4 90581465 90581508 -65048612 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1276 257 281 101 22 chr4 90581531 90581669 -65048451 + L1MCb LINE L1 2890 3038 -3526 1 1276 8568 26 1 0 chr4 90582208 90583498 -65046622 - L1Md_A LINE L1 0 6582 5302 1 1276 28 0 0 0 chr4 90583623 90583651 -65046469 + AT_rich Low_complexity Low_complexity 1 28 0 1 1276 1750 158 41 3 chr4 90585319 90585611 -65044509 + MTC LTR MaLR 1 303 -118 1 1276 679 166 5 17 chr4 90585844 90585976 -65044144 + MTC LTR MaLR 285 421 0 1 1276 190 367 46 15 chr4 90586076 90586206 -65043914 + L2c LINE L2 3023 3156 -231 1 1276 720 103 0 0 chr4 90588152 90588259 -65041861 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 1276 486 49 0 0 chr4 90588316 90588377 -65041743 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 1276 1359 246 48 26 chr4 90589534 90589885 -65040235 - MTEb LTR MaLR -12 367 9 1 1276 300 53 0 0 chr4 90590195 90590233 -65039887 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1276 630 291 13 19 chr4 90590233 90590387 -65039733 - B3A SINE B2 -44 154 2 1 1276 441 0 0 0 chr4 90591629 90591678 -65038442 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1276 644 379 98 39 chr4 90592446 90592885 -65037235 - LTR33 LTR ERVL 0 515 51 1 1276 180 0 0 0 chr4 90593208 90593228 -65036892 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1276 543 235 66 16 chr4 90593516 90593637 -65036483 + B1_Mur1 SINE Alu 23 149 0 1 1276 353 22 22 0 chr4 90593644 90593690 -65036430 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1276 255 114 0 0 chr4 90593826 90593870 -65036250 + (TCG)n Simple_repeat Simple_repeat 2 45 0 1 1276 237 318 119 23 chr4 90594826 90595003 -65035117 + L2 LINE L2 2435 2628 -791 1 1276 180 0 0 0 chr4 90595035 90595055 -65035065 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1276 29 0 0 0 chr4 90595151 90595180 -65034940 + AT_rich Low_complexity Low_complexity 1 29 0 1 1276 2967 35 0 0 chr4 90595182 90595529 -65034591 - L1Md_F2 LINE L1 -14 6568 6222 1 1276 367 323 34 77 chr4 90596346 90596554 -65033566 + RMER15 LTR ERVL 361 559 -16 1 1276 536 311 6 11 chr4 90596829 90597008 -65033112 + RMER15-int LTR ERVL 1461 1638 -3361 1 1276 526 334 60 45 chr4 90597416 90597748 -65032372 + RMER15-int LTR ERVL 2046 2382 -2617 1 1276 991 348 83 10 chr4 90597811 90598293 -65031827 + Lx8 LINE L1 6219 6735 -738 1 1276 245 296 200 0 chr4 90598598 90598713 -65031407 + RMER15 LTR ERVL 422 559 -16 1 1276 199 367 31 0 chr4 90599086 90599184 -65030936 - MIR SINE MIR -160 102 2 1 1276 234 182 15 29 chr4 90599292 90599360 -65030760 + A-rich Low_complexity Low_complexity 2 68 0 1 1276 1089 293 83 7 chr4 90600877 90601334 -65028786 + L1MB2 LINE L1 5577 6068 -103 1 1276 23 54 0 0 chr4 90601432 90601469 -65028651 + AT_rich Low_complexity Low_complexity 1 37 0 1 1276 1141 259 20 49 chr4 90601539 90601929 -65028191 - MTEb LTR MaLR 0 379 1 1 1276 373 60 60 0 chr4 90603252 90603319 -65026801 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 1276 689 246 25 78 chr4 90603373 90603655 -65026465 - RodERV21-int LTR ERV1 -105 4886 4620 1 1276 729 343 28 56 chr4 90603652 90604149 -65025971 - RodERV21-int LTR ERV1 -1753 3238 2756 1 1276 3582 67 2 0 chr4 90604737 90605352 -65024768 - L1_Mus1 LINE L1 -533 6034 5419 1 1276 3815 86 4 0 chr4 90605352 90605893 -65024227 + L1_Mus1 LINE L1 6045 6567 0 1 1276 2900 58 39 13 chr4 90606544 90606930 -65023190 + MTA_Mm LTR MaLR 1 396 0 1 1276 435 330 34 34 chr4 90607559 90607797 -65022323 - MER52-int LTR ERV1 -3017 4074 3837 1 1276 282 56 0 0 chr4 90608297 90608333 -65021787 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1 1276 569 297 0 0 chr4 90608481 90608609 -65021511 - RodERV21-int LTR ERV1 -2854 2137 2010 1 1276 1037 307 29 27 chr4 90608693 90609068 -65021052 - RodERV21-int LTR ERV1 -3884 1107 732 1 1276 337 202 19 96 chr4 90609049 90609153 -65020967 - RMER17C-int LTR ERVK -2714 524 429 1 1276 207 364 24 63 chr4 90609728 90609854 -65020266 + MIRb SINE MIR 35 155 -113 1 1276 198 246 92 62 chr4 90610159 90610224 -65019896 + MIRm SINE MIR 111 177 -99 1 1276 370 354 0 0 chr4 90610279 90610392 -65019728 + MTE2b LTR MaLR 1 113 -266 1 1276 535 286 66 0 chr4 90610479 90610675 -65019445 - Tigger14a DNA MER2_type -113 211 3 1 1276 201 191 24 0 chr4 90613077 90613119 -65017001 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1276 329 323 10 0 chr4 90613348 90613447 -65016673 + BC1_Mm scRNA scRNA 3 102 -50 1 1276 279 0 0 0 chr4 90613604 90613635 -65016485 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1276 360 0 0 0 chr4 90613635 90613674 -65016446 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1276 3809 59 8 58 chr4 90614615 90615115 -65015005 - MT2C_Mm LTR ERVL 0 475 1 1 1276 249 108 0 0 chr4 90615194 90615231 -65014889 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1276 327 78 0 0 chr4 90616586 90616637 -65013483 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1276 495 0 0 0 chr4 90616996 90617051 -65013069 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1276 216 0 0 0 chr4 90617200 90617224 -65012896 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1276 7287 100 43 5 chr4 90617640 90618953 -65011167 - L1_Mus4 LINE L1 -2 6634 5258 1 1276 3586 8 0 0 chr4 90618953 90619331 -65010789 - L1Md_A LINE L1 0 6582 6205 1 1276 5697 152 34 16 chr4 90619331 90619711 -65010409 - L1_Mus4 LINE L1 -626 5257 4884 1 1276 189 195 0 0 chr4 90619715 90619756 -65010364 + T-rich Low_complexity Low_complexity 1 41 0 1 1276 424 257 64 103 chr4 90620458 90620614 -65009506 + MER5A1 DNA MER1_type 16 165 -1 1 1276 223 369 74 15 chr4 90620727 90620862 -65009258 + MIRb SINE MIR 88 230 -38 1 1276 21 0 0 0 chr4 90621439 90621460 -65008660 + AT_rich Low_complexity Low_complexity 1 21 0 1 1276 1222 287 23 29 chr4 90622451 90622799 -65007321 + ORR1E LTR MaLR 8 353 -6 1 1276 438 290 83 13 chr4 90622836 90622993 -65007127 + MER58A DNA MER1_type 42 209 -15 1 1276 487 326 49 45 chr4 90623186 90623430 -65006690 + MLT1D LTR MaLR 6 250 -255 1 1276 268 297 35 26 chr4 90623478 90623592 -65006528 + MLT1D LTR MaLR 389 503 -2 1 1276 4442 95 62 3 chr4 90623698 90624311 -65005809 + L1_Mus3 LINE L1 5984 6632 -6 1 1276 904 248 26 0 chr4 90624349 90624575 -65005545 + Lx9 LINE L1 7215 7446 -198 1 1276 207 0 0 0 chr4 90624576 90624599 -65005521 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1276 24 32 0 0 chr4 90624647 90624678 -65005442 + AT_rich Low_complexity Low_complexity 1 31 0 1 1276 413 272 161 11 chr4 90624729 90624906 -65005214 + B4 SINE B4 4 197 -27 1 1276 857 158 0 6 chr4 90625092 90625222 -65004898 + polypurine Low_complexity Low_complexity 6 135 0 1 1276 1536 22 0 0 chr4 90625222 90625402 -65004718 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1276 857 158 0 6 chr4 90625402 90625430 -65004690 + polypurine Low_complexity Low_complexity 136 163 0 1 1276 1325 47 12 0 chr4 90625430 90625602 -65004518 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1 1276 249 331 168 37 chr4 90626258 90626632 -65003488 + L2 LINE L2 2644 3066 -353 1 1276 197 211 26 0 chr4 90627023 90627061 -65003059 - L2a LINE L2 -38 3388 3350 1 1276 3915 65 0 8 chr4 90627595 90628090 -65002030 - L1Md_F2 LINE L1 -25 6557 6067 1 1276 654 49 0 0 chr4 90628762 90628844 -65001276 + (TTA)n Simple_repeat Simple_repeat 3 84 0 1 1276 1178 148 90 9 chr4 90628844 90629056 -65001064 - Lx3B LINE L1 -10 6963 6735 1 1276 1250 207 101 95 chr4 90629094 90629268 -65000852 + ORR1D1 LTR MaLR 5 200 -174 1 1276 6150 73 24 1 chr4 90629268 90630034 -65000086 + L1_Mus3 LINE L1 5850 6632 -6 1 1276 1250 207 101 95 chr4 90630034 90630227 -64999893 + ORR1D1 LTR MaLR 201 374 0 1 1276 332 358 15 15 chr4 90630227 90630363 -64999757 + B1F SINE Alu 13 148 -1 1 1276 926 262 5 42 chr4 90630379 90630594 -64999526 + B3 SINE B2 5 211 -5 1 1276 34 42 0 0 chr4 90630594 90630642 -64999478 + AT_rich Low_complexity Low_complexity 1 48 0 1 1276 765 261 67 42 chr4 90632513 90632868 -64997252 + L1MB5 LINE L1 5700 6063 -121 1 1276 753 74 33 0 chr4 90632882 90633003 -64997117 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 1 1276 185 159 0 22 chr4 90633038 90633083 -64997037 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1276 225 408 72 5 chr4 90634137 90634344 -64995776 + L2c LINE L2 2916 3136 -251 1 1276 300 83 0 0 chr4 90634996 90635044 -64995076 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1276 982 273 78 13 chr4 90635218 90635526 -64994594 - RMER15 LTR ERVL -10 565 238 1 1276 200 277 21 0 chr4 90636471 90636518 -64993602 + polypurine Low_complexity Low_complexity 5 52 0 1 1276 21 36 0 0 chr4 90636809 90636837 -64993283 + AT_rich Low_complexity Low_complexity 1 28 0 2 1276 1721 40 0 0 chr4 90637641 90637843 -64992277 - L1Md_A LINE L1 0 6582 6381 2 1276 38814 31 0 1 chr4 90637857 90644644 -64985476 - L1Md_T LINE L1 0 6585 1 2 1276 1270 53 0 0 chr4 90644644 90644794 -64985326 - L1Md_A LINE L1 -192 6390 6241 2 1276 565 58 11 11 chr4 90644898 90644985 -64985135 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1276 348 182 0 0 chr4 90645235 90645323 -64984797 + CT-rich Low_complexity Low_complexity 1 88 0 2 1276 333 0 0 0 chr4 90645323 90645360 -64984760 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1276 419 35 18 0 chr4 90645360 90645416 -64984704 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1276 926 323 41 4 chr4 90645419 90645689 -64984431 - B4A SINE B4 -3 289 10 2 1276 36146 37 1 1 chr4 90645885 90652414 -64977706 + L1Md_T LINE L1 1 5589 -297 2 1276 9613 4 0 0 chr4 90652414 90653435 -64976685 + L1Md_T LINE L1 5590 6585 0 2 1276 35916 45 0 3 chr4 90653435 90658422 -64971698 + L1Md_T LINE L1 518 5589 -297 2 1276 9047 31 0 0 chr4 90658422 90659418 -64970702 + L1Md_T LINE L1 5590 6585 0 2 1276 947 234 46 13 chr4 90659488 90659726 -64970394 - Lx2B LINE L1 -4 6996 6751 2 1276 1629 191 0 0 chr4 90659716 90660009 -64970111 - L1_Mur1 LINE L1 -896 4990 4698 2 1276 9109 138 44 55 chr4 90660002 90661793 -64968327 + L1_Mur2 LINE L1 2859 4628 -1249 2 1276 999 53 0 8 chr4 90661921 90662054 -64968066 - L1Md_F2 LINE L1 -12 6570 6439 2 1276 22 35 0 0 chr4 90662133 90662162 -64967958 + AT_rich Low_complexity Low_complexity 1 29 0 2 1276 244 333 0 68 chr4 90662332 90662435 -64967685 - MLT1E2 LTR MaLR -2 625 530 2 1276 258 278 34 92 chr4 90662460 90662579 -64967541 + PB1D10 SINE Alu 6 117 0 2 1276 354 309 30 118 chr4 90662585 90662754 -64967366 - MLT1E2 LTR MaLR -125 502 349 2 1276 735 177 0 0 chr4 90662934 90663058 -64967062 - RMER1B Other Other -139 927 804 2 1276 1169 280 125 68 chr4 90663061 90664206 -64965914 - RMER1B Other Other -441 589 2 2 1276 258 105 0 0 chr4 90664697 90664735 -64965385 + (CTTG)n Simple_repeat Simple_repeat 1 38 0 2 1276 220 83 19 94 chr4 90664735 90664788 -64965332 - B1_Mus2 SINE Alu -1 146 98 2 1276 468 355 57 23 chr4 90664794 90665094 -64965026 + MLT1J-int LTR MaLR 151 460 -927 2 1276 671 282 115 127 chr4 90665168 90665672 -64964448 - MLT1D LTR MaLR -7 498 1 2 1276 36230 12 1 8 chr4 90666048 90671256 -64958864 + L1Md_A LINE L1 423 5586 -297 2 1276 8775 16 1 0 chr4 90671256 90672251 -64957869 + L1Md_A LINE L1 5587 6582 0 2 1276 288 0 0 0 chr4 90672491 90672523 -64957597 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1276 23 54 0 0 chr4 90673559 90673596 -64956524 + AT_rich Low_complexity Low_complexity 1 37 0 2 1276 23542 137 13 10 chr4 90673628 90675005 -64955115 + Lx LINE L1 516 1908 -3975 2 1276 3478 18 2 2 chr4 90675005 90675401 -64954719 - MTA_Mm LTR MaLR 0 396 1 2 1276 23542 165 8 19 chr4 90675401 90677708 -64952412 + Lx LINE L1 1909 4198 -1685 2 1276 549 0 0 0 chr4 90677708 90677769 -64952351 + (GTTTG)n Simple_repeat Simple_repeat 3 63 0 2 1276 1076 92 0 7 chr4 90677779 90677922 -64952198 - B1_Mus1 SINE Alu -2 146 5 2 1276 23542 143 16 19 chr4 90677922 90680401 -64949719 + Lx LINE L1 4199 6649 -5 2 1276 6362 57 0 7 chr4 90681343 90682187 -64947933 + L1Md_F2 LINE L1 5725 6562 -20 2 1276 197 241 194 16 chr4 90682803 90682927 -64947193 + MIRc SINE MIR 35 175 -93 2 1276 1311 292 124 42 chr4 90683071 90683428 -64946692 + Lx9 LINE L1 6735 7084 -560 2 1276 1089 95 0 0 chr4 90683428 90683575 -64946545 - B1_Mm SINE Alu 0 147 1 2 1276 1311 292 124 42 chr4 90683575 90684046 -64946074 + Lx9 LINE L1 7085 7631 -13 2 1276 226 138 35 0 chr4 90684382 90684440 -64945680 + (TATAG)n Simple_repeat Simple_repeat 4 63 0 2 1276 230 208 19 0 chr4 90685563 90685616 -64944504 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1276 229 375 131 31 chr4 90685649 90686001 -64944119 - L2b LINE L2 -37 3338 2952 2 1276 21 36 0 0 chr4 90686571 90686599 -64943521 + AT_rich Low_complexity Low_complexity 1 28 0 2 1276 879 261 100 22 chr4 90686622 90686892 -64943228 + B4A SINE B4 2 292 0 2 1276 395 231 11 61 chr4 90686897 90687077 -64943043 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 2 1276 2028 257 56 16 chr4 90688077 90688594 -64941526 - RMER15 LTR ERVL -1 574 37 2 1276 1061 87 7 0 chr4 90689609 90689758 -64940362 + URR1A DNA MER1_type 77 226 0 2 1276 2155 242 44 89 chr4 90690043 90690706 -64939414 - Lx5 LINE L1 -5 7045 6413 2 1276 586 338 52 66 chr4 90695623 90695987 -64934133 - ORR1E LTR MaLR 0 359 1 2 1276 588 297 85 59 chr4 90696297 90696533 -64933587 - MER74C LTR ERVL 0 460 219 2 1276 191 36 36 0 chr4 90696536 90696564 -64933556 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 2 1276 7732 130 53 5 chr4 90696581 90698217 -64931903 - Lx2 LINE L1 -19 6978 5259 2 1276 263 385 77 0 chr4 90698217 90698334 -64931786 - MER74C LTR ERVL -222 238 113 2 1276 264 279 60 48 chr4 90698762 90698845 -64931275 + MLT1E2 LTR MaLR 2 85 -542 2 1276 6652 89 29 35 chr4 90698979 90700204 -64929916 + L1_Mus3 LINE L1 5414 6631 -7 2 1276 21 57 0 0 chr4 90700212 90700247 -64929873 + AT_rich Low_complexity Low_complexity 1 35 0 2 159 29220 66 4 3 chr4 90700298 90704545 -64925575 + L1Md_F2 LINE L1 1016 5267 -616 2 1277 23 54 0 0 chr4 90704991 90705028 -64925092 + AT_rich Low_complexity Low_complexity 1 37 0 2 1277 2499 47 3 0 chr4 90705029 90705348 -64924772 + L1Md_F2 LINE L1 5266 5585 -298 2 1277 8101 49 2 0 chr4 90705349 90706331 -64923789 + L1Md_F2 LINE L1 5587 6570 -12 2 1277 840 20 0 0 chr4 90707752 90707850 -64922270 + (TTGG)n Simple_repeat Simple_repeat 1 98 0 2 1277 245 51 26 0 chr4 90708186 90708225 -64921895 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1277 8153 199 58 48 chr4 90708598 90711930 -64918190 - Lx6 LINE L1 -172 7288 3946 2 1277 3483 81 0 51 chr4 90711930 90712437 -64917683 - L1Md_F2 LINE L1 -4 6578 6098 2 1277 8153 176 60 61 chr4 90712437 90712578 -64917542 - Lx6 LINE L1 -1935 3945 3792 2 1277 271 308 37 22 chr4 90712779 90712915 -64917205 - L1M2 LINE L1 -1094 5049 4912 2 1277 762 251 67 0 chr4 90712925 90713120 -64917000 - B3 SINE B2 -8 208 1 2 1277 3236 46 5 5 chr4 90713320 90713716 -64916404 - MTA_Mm LTR MaLR 0 396 1 2 1277 320 333 119 28 chr4 90713717 90713893 -64916227 - L1MC LINE L1 -2026 4120 3929 2 1277 7645 45 8 0 chr4 90713915 90715318 -64914802 - L1Md_F3 LINE L1 -14 6570 5157 2 1277 427 321 245 12 chr4 90715349 90715869 -64914251 - L1MC LINE L1 -2243 3903 3266 2 1277 262 328 36 44 chr4 90715911 90716048 -64914072 + MER105 DNA DNA 7 142 -62 2 1277 448 330 44 72 chr4 90716073 90716455 -64913665 - L1MC LINE L1 -2907 3239 2865 2 1277 265 310 23 0 chr4 90716465 90716552 -64913568 + L1M2 LINE L1 4877 4965 -1178 2 1277 284 159 120 9 chr4 90716560 90716668 -64913452 - Lx9 LINE L1 -1 7643 7524 2 1277 324 0 0 0 chr4 90716758 90716794 -64913326 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1277 350 253 102 52 chr4 90716825 90716920 -64913200 - L1M3 LINE L1 -941 5202 5090 2 1277 411 38 0 0 chr4 90716920 90716973 -64913147 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 2 1277 350 242 63 52 chr4 90716973 90717110 -64913010 - L1M3 LINE L1 -1051 5089 4950 2 1277 198 261 0 80 chr4 90717440 90717490 -64912630 + MIRb SINE MIR 214 259 -9 2 1277 189 362 0 0 chr4 90720243 90720312 -64909808 + L3 LINE CR1 4258 4326 -163 2 1277 444 302 45 40 chr4 90720357 90720533 -64909587 + MIRb SINE MIR 16 192 -76 2 1277 244 310 40 150 chr4 90721088 90721335 -64908785 - L2a LINE L2 -59 3367 3148 2 1277 889 314 71 21 chr4 90721425 90721750 -64908370 + ORR1E LTR MaLR 19 359 0 2 1277 1202 186 0 13 chr4 90722064 90722293 -64907827 - URR1A DNA MER1_type 0 226 1 2 1277 282 328 8 23 chr4 90722993 90723121 -64906999 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 2 1277 309 284 12 12 chr4 90723408 90723490 -64906630 - B4A SINE B4 -209 83 2 2 1277 653 24 12 0 chr4 90723610 90723693 -64906427 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 2 1277 29 0 0 0 chr4 90725698 90725727 -64904393 + AT_rich Low_complexity Low_complexity 1 29 0 2 1277 24 32 0 0 chr4 90726287 90726318 -64903802 + AT_rich Low_complexity Low_complexity 1 31 0 2 1277 640 263 18 152 chr4 90726355 90726579 -64903541 - B3A SINE B2 -1 194 1 2 1277 568 319 49 10 chr4 90726786 90726989 -64903131 - ORR1E-int LTR MaLR -1369 211 1 2 1277 280 238 16 0 chr4 90726989 90727052 -64903068 - ORR1E LTR MaLR 0 379 316 2 1277 358 40 0 0 chr4 90727060 90727110 -64903010 + L1_Mus2 LINE L1 6517 6566 0 2 1277 609 291 40 72 chr4 90727746 90727968 -64902152 - ORR1E LTR MaLR -120 239 25 2 1277 347 389 22 22 chr4 90728999 90729178 -64900942 + MIRb SINE MIR 59 237 -31 2 1277 37362 31 1 11 chr4 90729698 90735918 -64894202 - L1Md_T LINE L1 0 6582 422 2 1277 189 340 70 0 chr4 90736633 90736733 -64893387 - MIRb SINE MIR -62 206 100 2 1277 280 384 40 80 chr4 90736970 90737120 -64893000 + L3b LINE CR1 291 434 -48 2 1277 242 56 0 27 chr4 90737575 90737612 -64892508 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 2 1277 26 30 0 0 chr4 90737896 90737929 -64892191 + AT_rich Low_complexity Low_complexity 1 33 0 2 1277 473 301 94 37 chr4 90737936 90738181 -64891939 - MIRc SINE MIR -6 262 4 2 1277 209 296 103 8 chr4 90738323 90738449 -64891671 - MIRb SINE MIR 0 268 131 2 1277 1664 167 98 57 chr4 90738499 90738868 -64891252 + ORR1C2 LTR MaLR 1 384 0 2 1277 315 235 121 10 chr4 90739012 90739111 -64891009 + MER5A DNA MER1_type 71 180 -9 2 1277 250 178 233 0 chr4 90739150 90739240 -64890880 + Lx9 LINE L1 7533 7643 -1 2 1277 496 350 7 0 chr4 90739861 90740001 -64890119 + ID_B1 SINE B4 83 223 -1 2 1277 3296 48 0 5 chr4 90740407 90740805 -64889315 + MTA_Mm LTR MaLR 1 396 0 2 1277 274 336 69 14 chr4 90740985 90741130 -64888990 - MIR SINE MIR -7 255 103 2 1277 451 299 63 0 chr4 90742769 90742895 -64887225 + B4A SINE B4 97 230 -62 2 1277 517 313 130 27 chr4 90742895 90743079 -64887041 + B3 SINE B2 1 203 -13 2 1277 263 28 0 27 chr4 90743094 90743131 -64886989 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 1277 386 66 0 32 chr4 90743209 90743272 -64886848 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 2 1277 236 359 13 0 chr4 90744059 90744137 -64885983 + MIRb SINE MIR 20 98 -170 2 1277 369 0 0 0 chr4 90744563 90744604 -64885516 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1277 503 265 19 38 chr4 90744629 90744786 -64885334 - MIRb SINE MIR -10 258 105 3 1277 197 346 18 27 chr4 90745160 90745270 -64884850 - MIR SINE MIR -57 205 97 3 1277 1814 172 102 0 chr4 90745661 90746004 -64884116 + ORR1C1 LTR MaLR 1 378 0 3 1277 756 142 32 3 chr4 90746295 90746605 -64883515 + CT-rich Low_complexity Low_complexity 1 319 0 3 1277 315 0 0 0 chr4 90746605 90746640 -64883480 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1277 465 305 85 0 chr4 90746650 90746768 -64883352 - RSINE1 SINE B4 -32 133 6 3 1277 772 158 72 2 chr4 90748200 90748358 -64881762 + URR1B DNA MER1_type 59 225 0 3 1277 222 37 0 0 chr4 90749954 90749981 -64880139 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1277 3055 277 50 6 chr4 90750032 90750996 -64879124 - Lx8 LINE L1 -133 7340 6334 3 1277 315 0 0 0 chr4 90750996 90751031 -64879089 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1277 3055 277 50 6 chr4 90751031 90751161 -64878959 - Lx8 LINE L1 -1140 6333 6198 3 1277 182 345 93 17 chr4 90751300 90751418 -64878702 - MIRm SINE MIR -92 184 58 3 1277 459 0 0 0 chr4 90751539 90751590 -64878530 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1277 306 310 165 30 chr4 90751945 90752078 -64878042 + MamRep38 DNA hAT 6 156 -139 3 1277 281 328 100 21 chr4 90753345 90753485 -64876635 - LTR33B LTR ERVL -352 151 1 3 1277 723 240 99 10 chr4 90753769 90753971 -64876149 - Charlie22a DNA MER1_type -169 322 103 3 1277 393 22 0 0 chr4 90754286 90754332 -64875788 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1277 270 0 0 0 chr4 90754711 90754741 -64875379 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1277 394 400 88 39 chr4 90755194 90755579 -64874541 - L2b LINE L2 0 3375 2972 3 1277 324 0 0 0 chr4 90756656 90756692 -64873428 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1277 1182 153 5 0 chr4 90757428 90757631 -64872489 - Lx9 LINE L1 -644 7000 6797 3 1277 2109 190 115 19 chr4 90757627 90758094 -64872026 + Lx9 LINE L1 6996 7481 -163 3 1277 468 0 0 0 chr4 90758094 90758146 -64871974 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1277 2109 190 115 19 chr4 90758146 90758268 -64871852 + Lx9 LINE L1 7482 7641 -3 3 1277 556 188 0 0 chr4 90758281 90758382 -64871738 + BC1_Mm scRNA scRNA 7 107 -45 3 1277 207 0 0 0 chr4 90759646 90759669 -64870451 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1277 481 311 25 45 chr4 90759731 90759925 -64870195 + B4A SINE B4 2 184 -108 3 1277 306 0 0 0 chr4 90760615 90760649 -64869471 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1277 227 285 0 97 chr4 90760961 90761007 -64869113 + RMER17C LTR ERVK 181 226 -184 3 1277 465 110 0 0 chr4 90761007 90761080 -64869040 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1277 227 285 0 97 chr4 90761080 90761177 -64868943 + RMER17C LTR ERVK 227 310 -100 3 1277 372 77 0 0 chr4 90761688 90761740 -64868380 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1277 258 56 0 0 chr4 90761742 90761778 -64868342 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1277 615 289 0 0 chr4 90762193 90762335 -64867785 + ID_B1 SINE B4 81 222 -2 3 1277 277 421 28 11 chr4 90762620 90762800 -64867320 + MIRb SINE MIR 50 232 -36 3 1277 391 272 31 133 chr4 90764529 90764724 -64865396 + MER5B DNA MER1_type 4 178 0 3 1277 267 265 0 19 chr4 90765084 90765188 -64864932 + L1M3 LINE L1 5648 5749 -422 3 1277 1335 258 19 22 chr4 90765213 90765578 -64864542 + ORR1D2 LTR MaLR 2 365 -5 3 1277 358 160 40 13 chr4 90765643 90765719 -64864401 + MTD LTR MaLR 341 418 -1 3 1277 1891 214 51 62 chr4 90765730 90766263 -64863857 + RLTR11A2 LTR ERVK 1 527 0 3 1277 255 31 0 0 chr4 90766875 90766907 -64863213 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1277 331 331 13 90 chr4 90766933 90767083 -64863037 - MER5A DNA MER1_type -7 182 45 3 1277 439 346 61 61 chr4 90767083 90767378 -64862742 + MLT1A0 LTR MaLR 3 297 -68 3 1277 297 0 0 0 chr4 90767547 90767580 -64862540 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1277 232 284 60 0 chr4 90767599 90767666 -64862454 - MLT1J1 LTR MaLR -264 180 110 3 1277 189 121 0 0 chr4 90768218 90768251 -64861869 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 1277 7076 34 9 1 chr4 90768752 90769655 -64860465 - L1Md_F3 LINE L1 0 6584 5675 3 1277 411 302 123 27 chr4 90771077 90771264 -64858856 - ORR1E LTR MaLR -154 205 1 3 1277 935 248 60 51 chr4 90771264 90771575 -64858545 - ORR1E-int LTR MaLR -52 1528 1215 3 1277 318 159 10 154 chr4 90771595 90771632 -64858488 - ORR1E-int LTR MaLR -1485 95 72 3 1277 189 0 0 0 chr4 90771632 90771653 -64858467 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1277 318 159 10 154 chr4 90771653 90771719 -64858401 - ORR1E-int LTR MaLR -1509 71 7 3 1277 364 321 107 14 chr4 90771725 90771992 -64858128 - ORR1E LTR MaLR 0 379 67 3 1277 279 0 0 0 chr4 90772033 90772064 -64858056 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1277 323 349 23 8 chr4 90772304 90772437 -64857683 + MLT1J2 LTR MaLR 13 147 -301 3 1277 3468 105 39 7 chr4 90773195 90773740 -64856380 - Lx3_Mus LINE L1 -13 6996 6435 3 1277 406 211 0 78 chr4 90773740 90773843 -64856277 - RMER1B Other Other -731 335 241 3 1277 702 257 47 0 chr4 90774134 90774282 -64855838 + B3A SINE B2 2 156 -42 3 1277 405 0 0 0 chr4 90774295 90774340 -64855780 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1277 393 336 91 8 chr4 90774549 90774681 -64855439 + B3A SINE B2 26 168 -30 3 1277 504 0 0 0 chr4 90774684 90774740 -64855380 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1277 545 282 8 0 chr4 90774783 90774914 -64855206 + B1F SINE Alu 5 136 -13 3 1277 229 208 0 27 chr4 90774917 90774991 -64855129 + GA-rich Low_complexity Low_complexity 3 74 0 3 1277 207 222 89 0 chr4 90775619 90775664 -64854456 + MIR SINE MIR 19 67 -195 3 1277 230 285 81 106 chr4 90777446 90777607 -64852513 - MIR SINE MIR -22 186 28 3 1277 407 305 193 52 chr4 90777759 90778008 -64852112 - B4A SINE B4 -8 284 1 3 1277 257 354 40 14 chr4 90779127 90779301 -64850819 + MIRb SINE MIR 20 203 -65 3 1277 209 312 94 0 chr4 90780134 90780198 -64849922 + L4 LINE RTE 1019 1088 -941 3 1277 208 321 80 42 chr4 90780368 90780608 -64849512 + MIRb SINE MIR 3 260 -8 3 1277 237 132 0 0 chr4 90781040 90781078 -64849042 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 3 1277 893 9 9 0 chr4 90782551 90782657 -64847463 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 1277 5623 82 14 1 chr4 90782661 90783370 -64846750 + L1_Mus2 LINE L1 5849 6566 0 3 1277 23 0 0 0 chr4 90783427 90783450 -64846670 + AT_rich Low_complexity Low_complexity 1 23 0 3 1277 303 301 46 65 chr4 90783616 90783769 -64846351 - MIRb SINE MIR -117 151 2 3 1277 306 0 0 0 chr4 90783990 90784024 -64846096 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1277 338 268 7 2 chr4 90784041 90784133 -64845987 - Lx8 LINE L1 -262 5927 5821 3 1277 206 333 0 0 chr4 90784133 90784193 -64845927 + L2b LINE L2 3315 3374 -1 3 1277 213 326 113 28 chr4 90784355 90784532 -64845588 - MIRb SINE MIR -66 202 11 3 1277 280 294 0 48 chr4 90785252 90785377 -64844743 + MER57-int LTR ERV1 7148 7266 -271 3 1277 486 50 12 48 chr4 90786343 90786427 -64843693 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 3 1277 506 254 173 70 chr4 90789331 90789602 -64840518 - Lx8 LINE L1 -6 7467 7169 3 1277 510 289 72 37 chr4 90789730 90790079 -64840041 + Lx7 LINE L1 5838 6198 -1498 3 1277 5228 71 0 11 chr4 90790309 90790951 -64839169 + L1_Mus1 LINE L1 5933 6567 0 3 1277 306 244 101 34 chr4 90791352 90791441 -64838679 - PB1D10 SINE Alu -21 96 2 3 1277 616 255 7 60 chr4 90791609 90791759 -64838361 + B1_Mur1 SINE Alu 7 148 -1 3 1277 5210 67 17 0 chr4 90792858 90793490 -64836630 + L1_Mus1 LINE L1 5925 6567 0 3 1277 932 268 26 0 chr4 90793825 90794015 -64836105 + B3 SINE B2 16 210 -6 3 1277 200 306 221 25 chr4 90795080 90795284 -64834836 - L3 LINE CR1 -778 3711 3468 3 1277 351 65 0 0 chr4 90795551 90795597 -64834523 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1277 240 35 0 0 chr4 90795833 90795862 -64834258 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1277 1628 241 39 53 chr4 90796049 90796672 -64833448 - RMER15 LTR ERVL 0 575 27 3 1277 275 269 29 15 chr4 90796773 90796841 -64833279 - MER21B LTR ERV1 -576 287 219 3 1277 433 248 27 18 chr4 90797232 90797343 -64832777 + MLT1A1 LTR MaLR 295 406 -2 3 1277 432 0 0 0 chr4 90798312 90798360 -64831760 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1277 491 358 88 5 chr4 90798407 90798623 -64831497 - B4A SINE B4 -22 270 37 3 1277 261 340 55 88 chr4 90800121 90800395 -64829725 - L2b LINE L2 -5 3382 3118 3 1277 387 352 44 6 chr4 90800542 90800702 -64829418 + MIRb SINE MIR 79 244 -24 3 1277 822 252 30 76 chr4 90800765 90801027 -64829093 + MTEa LTR MaLR 8 257 -122 3 1277 436 247 73 19 chr4 90801036 90801167 -64828953 + MTEa LTR MaLR 237 373 -6 3 1277 231 36 0 0 chr4 90801257 90801285 -64828835 + (TTG)n Simple_repeat Simple_repeat 3 30 0 3 1277 234 0 0 0 chr4 90801319 90801345 -64828775 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 3 1277 419 284 25 25 chr4 90801352 90801471 -64828649 - PB1D7 SINE Alu -1 119 1 3 1277 218 155 0 65 chr4 90802872 90802934 -64827186 + T-rich Low_complexity Low_complexity 2 59 0 3 1277 1156 95 0 13 chr4 90802938 90803088 -64827032 - B1_Mus1 SINE Alu 0 148 1 3 1277 531 267 250 27 chr4 90803501 90803797 -64826323 + MLT1A0 LTR MaLR 1 362 -3 3 1277 553 284 48 84 chr4 90804778 90804913 -64825207 + B4 SINE B4 71 213 -79 3 1277 261 0 0 0 chr4 90804913 90804942 -64825178 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 3 1277 553 279 43 85 chr4 90804942 90804956 -64825164 + B4 SINE B4 213 219 -73 3 1277 432 0 0 0 chr4 90804956 90805004 -64825116 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1277 553 279 43 85 chr4 90805004 90805075 -64825045 + B4 SINE B4 220 288 -4 3 1277 369 0 0 0 chr4 90805121 90805162 -64824958 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1277 216 0 0 0 chr4 90805426 90805450 -64824670 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1277 679 186 6 10 chr4 90806115 90806246 -64823874 - ORR1B1 LTR MaLR -217 177 50 4 1277 536 168 23 23 chr4 90806345 90806516 -64823604 + GA-rich Low_complexity Low_complexity 4 174 0 4 1277 286 293 30 20 chr4 90806676 90806777 -64823343 + RMER1C Other Other 30 131 -1211 4 1277 1999 268 85 8 chr4 90806824 90807412 -64822708 + RMER1C Other Other 710 1342 0 4 1277 225 108 0 0 chr4 90808259 90808296 -64821824 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1277 300 221 0 0 chr4 90808324 90808401 -64821719 + GA-rich Low_complexity Low_complexity 2 78 0 4 1277 243 374 14 21 chr4 90808452 90808594 -64821526 - Lx8 LINE L1 -223 7250 7110 4 1277 607 257 228 26 chr4 90809650 90809918 -64820202 + MLT1A1 LTR MaLR 68 389 -19 4 1277 208 369 60 0 chr4 90810058 90810142 -64819978 + MIRb SINE MIR 20 108 -160 4 1277 450 238 126 0 chr4 90811161 90811304 -64818816 - L1MC2 LINE L1 -7 6337 6177 4 1277 1729 197 86 14 chr4 90811719 90812080 -64818040 - Lx5 LINE L1 0 7050 6664 4 1277 756 272 91 24 chr4 90812108 90812360 -64817760 + B4A SINE B4 1 269 -23 4 1277 342 0 0 0 chr4 90812361 90812399 -64817721 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1277 267 281 39 109 chr4 90812673 90812829 -64817291 - MLT1A0 LTR MaLR -183 182 38 4 1277 207 69 0 0 chr4 90814295 90814324 -64815796 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1277 3162 297 7 34 chr4 90816356 90817338 -64812782 + Lx9 LINE L1 6382 7337 -307 4 1277 21 95 0 0 chr4 90817397 90817460 -64812660 + AT_rich Low_complexity Low_complexity 1 63 0 4 1277 191 215 15 0 chr4 90817635 90817700 -64812420 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1277 232 274 104 78 chr4 90817704 90817819 -64812301 - MIRb SINE MIR -78 190 73 4 1277 236 246 33 0 chr4 90818058 90818119 -64812001 + T-rich Low_complexity Low_complexity 2 64 0 4 1277 1049 301 102 12 chr4 90818184 90818775 -64811345 - Lx7 LINE L1 -1788 5908 5297 4 1277 25 0 0 0 chr4 90818779 90818804 -64811316 + AT_rich Low_complexity Low_complexity 1 25 0 4 1277 704 246 29 184 chr4 90818918 90819326 -64810794 - Tigger7 DNA MER2_type -1 2490 2146 4 1277 2047 76 4 11 chr4 90819370 90819650 -64810470 - L1Md_F2 LINE L1 -63 6519 6242 4 1277 218 317 12 47 chr4 90819732 90819818 -64810302 - ID2 SINE ID 0 83 1 4 1277 259 250 82 14 chr4 90819818 90819889 -64810231 - Tigger7 DNA MER2_type -2411 80 5 4 1277 22 0 0 0 chr4 90819892 90819914 -64810206 + AT_rich Low_complexity Low_complexity 1 22 0 4 1277 719 270 38 5 chr4 90821048 90821260 -64808860 + MIR SINE MIR 44 262 0 4 1277 465 19 0 0 chr4 90821543 90821597 -64808523 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1277 405 0 0 0 chr4 90821597 90821641 -64808479 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1277 279 178 0 0 chr4 90821694 90821739 -64808381 - B4A SINE B4 -68 224 180 4 1277 346 309 0 36 chr4 90821765 90821849 -64808271 - B4A SINE B4 -73 219 139 4 1277 1189 50 0 0 chr4 90821849 90821989 -64808131 - L1_Mus1 LINE L1 -165 6402 6263 4 1277 665 82 144 0 chr4 90821989 90822086 -64808034 + L1Md_F2 LINE L1 6453 6563 -19 4 1277 267 353 40 7 chr4 90822235 90822386 -64807734 - MamRep605 Unknown Unknown -260 616 461 4 1277 280 337 10 29 chr4 90822711 90822815 -64807305 - Tigger7 DNA MER2_type 0 2491 2390 4 1277 225 297 72 0 chr4 90822827 90822938 -64807182 - MamRep605 Unknown Unknown -735 141 23 4 1277 449 236 11 11 chr4 90824570 90824664 -64805456 + RSINE1 SINE B4 2 95 -70 4 1277 572 40 13 0 chr4 90824702 90824777 -64805343 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1277 618 285 139 49 chr4 90824790 90825056 -64805064 + B4A SINE B4 3 292 0 4 1277 446 295 173 0 chr4 90825528 90825701 -64804419 - MER3 DNA MER1_type -6 203 1 4 1277 552 30 0 0 chr4 90826455 90826521 -64803599 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 4 1277 846 249 116 25 chr4 90827977 90828331 -64801789 + MLT2B2 LTR ERVL 10 366 -48 4 1277 276 288 177 41 chr4 90828963 90829148 -64800972 - MLT1A1 LTR MaLR -2 406 172 4 1277 186 273 59 29 chr4 90829726 90829794 -64800326 - L2a LINE L2 -25 3401 3332 4 1277 663 181 23 158 chr4 90829985 90830162 -64799958 + ORR1D1 LTR MaLR 1 153 -221 4 1277 1445 34 6 0 chr4 90830199 90830378 -64799742 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1277 288 0 0 0 chr4 90830378 90830410 -64799710 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 4 1277 342 98 0 0 chr4 90830407 90830458 -64799662 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1277 500 204 73 8 chr4 90830458 90830603 -64799517 + ORR1D1 LTR MaLR 149 297 -77 4 1277 879 94 0 0 chr4 90830613 90830740 -64799380 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 4 1277 360 0 0 0 chr4 90831585 90831625 -64798495 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1277 24 32 0 0 chr4 90832094 90832125 -64797995 + AT_rich Low_complexity Low_complexity 1 31 0 4 1277 705 226 23 0 chr4 90832242 90832375 -64797745 + B1F SINE Alu 7 142 -7 4 1277 232 274 216 82 chr4 90832375 90832410 -64797710 + MT2B2 LTR ERVL 171 361 -223 4 159 351 279 48 41 chr4 90832670 90832903 -64797217 - MER89 LTR ERV1 -25 534 229 4 1278 700 324 69 83 chr4 90833327 90833774 -64796346 + LTR86A1 LTR ERVL 9 449 -64 4 1278 189 0 0 0 chr4 90833780 90833801 -64796319 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1278 253 182 12 83 chr4 90834090 90834174 -64795946 + Lx7 LINE L1 7601 7678 -18 4 1278 3161 21 18 0 chr4 90834294 90834634 -64795486 + ORR1A0 LTR MaLR 1 346 0 4 1278 408 279 96 5 chr4 90834707 90834905 -64795215 + MER63D DNA AcHobo 37 252 -809 4 1278 407 241 0 0 chr4 90834991 90835070 -64795050 - B3A SINE B2 -119 79 1 4 1278 36289 50 0 12 chr4 90835511 90836966 -64793154 + L1Md_T LINE L1 288 1822 -4064 4 1278 2752 66 28 45 chr4 90836966 90837363 -64792757 + RLTR10 LTR ERVK 1 390 0 4 1278 36289 41 0 2 chr4 90837363 90841135 -64788985 + L1Md_T LINE L1 1823 5588 -298 4 1278 9058 31 0 0 chr4 90841136 90842132 -64787988 + L1Md_T LINE L1 5590 6585 0 4 1278 499 250 44 0 chr4 90842330 90842490 -64787630 - RCHARR1 DNA MER1_type -7 967 801 4 1278 662 271 136 54 chr4 90842560 90842818 -64787302 - B4A SINE B4 -7 285 7 4 1278 2819 221 38 58 chr4 90842978 90843742 -64786378 - RCHARR1 DNA MER1_type -160 814 66 4 1278 225 0 0 0 chr4 90843958 90843983 -64786137 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 4 1278 828 260 107 93 chr4 90844533 90844889 -64785231 - MTEa LTR MaLR -14 365 5 4 1278 340 328 28 22 chr4 90845860 90846038 -64784082 - MIR SINE MIR -23 239 61 4 1278 310 190 37 37 chr4 90848926 90849008 -64781112 - MTE2a-int LTR MaLR -947 633 552 4 1278 1018 276 99 52 chr4 90849019 90849402 -64780718 - MTE2a-int LTR MaLR -1179 401 1 4 1278 1230 283 50 6 chr4 90849402 90849765 -64780355 - MTE2a LTR MaLR 0 379 1 4 1278 207 0 0 0 chr4 90849857 90849880 -64780240 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1278 244 236 11 11 chr4 90849964 90850054 -64780066 + GA-rich Low_complexity Low_complexity 4 93 0 4 1278 219 139 0 0 chr4 90850095 90850131 -64779989 + (ATG)n Simple_repeat Simple_repeat 3 38 0 4 1278 324 0 0 0 chr4 90850334 90850370 -64779750 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1278 38692 31 0 0 chr4 90850426 90856741 -64773379 - L1Md_T LINE L1 0 6585 174 4 1278 387 0 0 0 chr4 90857531 90857574 -64772546 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1278 206 158 0 17 chr4 90857574 90857627 -64772493 + CT-rich Low_complexity Low_complexity 7 58 0 4 1278 264 226 0 0 chr4 90857650 90857712 -64772408 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1278 764 173 7 0 chr4 90858537 90858687 -64771433 + CT-rich Low_complexity Low_complexity 3 153 0 4 1278 258 284 30 0 chr4 90858882 90858949 -64771171 + MT2B2 LTR ERVL 173 241 -343 4 1278 358 161 36 36 chr4 90858900 90858984 -64771136 + PB1D10 SINE Alu 34 117 0 4 1278 233 131 48 32 chr4 90860128 90860191 -64769929 - Lx7 LINE L1 -1 7695 7632 4 1278 279 75 0 0 chr4 90860229 90860242 -64769878 + (TA)n Simple_repeat Simple_repeat 1 13 0 4 1278 333 0 0 0 chr4 90860242 90860279 -64769841 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1278 279 75 0 0 chr4 90860279 90860305 -64769815 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1278 617 264 42 47 chr4 90860373 90860588 -64769532 - Lx7 LINE L1 -300 7396 7183 4 1278 341 75 19 0 chr4 90860964 90861017 -64769103 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 4 1278 890 191 202 0 chr4 90861155 90861343 -64768777 + URR1A DNA MER1_type 1 226 0 4 1278 489 17 0 0 chr4 90861775 90861833 -64768287 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1278 262 273 77 13 chr4 90862823 90862901 -64767219 + B3A SINE B2 4 86 -112 4 1278 378 61 0 0 chr4 90862907 90862956 -64767164 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1278 774 281 51 15 chr4 90862993 90863183 -64766937 + ID_B1 SINE B4 2 199 -25 4 1278 396 0 0 0 chr4 90863183 90863227 -64766893 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1278 369 0 0 0 chr4 90864304 90864345 -64765775 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1278 21 36 0 0 chr4 90864972 90865000 -64765120 + AT_rich Low_complexity Low_complexity 1 28 0 4 1278 2330 114 25 0 chr4 90865496 90865812 -64764308 + ORR1A2 LTR MaLR 1 324 -3 4 1278 218 351 0 0 chr4 90865919 90865976 -64764144 + ID SINE ID 24 80 -144 4 1278 705 318 5 30 chr4 90866115 90866313 -64763807 + B3A SINE B2 1 193 -5 4 1278 365 344 69 81 chr4 90866833 90867327 -64762793 + Tigger5 DNA MER2_type 702 1189 -1217 4 1278 183 413 40 0 chr4 90867434 90867509 -64762611 + L2b LINE L2 3266 3343 -32 4 1278 784 197 44 0 chr4 90867548 90867685 -64762435 - B1_Mur3 SINE Alu -6 143 1 4 1278 387 0 0 0 chr4 90867785 90867828 -64762292 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1278 430 266 133 82 chr4 90868980 90869213 -64760907 + ORR1D2 LTR MaLR 2 246 -121 5 1278 254 284 0 13 chr4 90869234 90869309 -64760811 + ORR1D2 LTR MaLR 306 379 0 5 1278 392 65 48 0 chr4 90869819 90869881 -64760239 + (CACCAT)n Simple_repeat Simple_repeat 1 65 0 5 1278 601 248 13 65 chr4 90869901 90870056 -64760064 + B4 SINE B4 6 152 -140 5 1278 280 233 160 43 chr4 90870000 90870094 -64760026 + PB1D10 SINE Alu 10 114 -3 5 1278 2018 246 75 73 chr4 90870112 90870542 -64759578 + Lx9 LINE L1 6908 7316 -328 5 1278 3856 143 75 15 chr4 90870542 90871194 -64758926 + RLTR17 LTR ERVK 2 692 0 5 1278 2018 246 75 73 chr4 90871194 90871484 -64758636 + Lx9 LINE L1 7317 7629 -15 5 1278 231 310 99 52 chr4 90871636 90871809 -64758311 - MIRb SINE MIR -50 218 32 5 1278 270 0 0 0 chr4 90872747 90872777 -64757343 + (TTGG)n Simple_repeat Simple_repeat 3 32 0 5 1278 503 269 30 75 chr4 90872804 90873005 -64757115 - Tigger9b DNA MER2_type -165 459 268 5 1278 278 279 47 28 chr4 90873545 90873652 -64756468 + L2 LINE L2 2790 2898 -521 5 1278 306 0 0 0 chr4 90873980 90874014 -64756106 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1278 353 118 338 0 chr4 90875496 90875564 -64754556 + RMER15 LTR ERVL 47 137 -438 5 1278 2148 145 93 129 chr4 90875555 90876111 -64754009 + RMER15 LTR ERVL 40 575 0 5 1278 509 281 60 71 chr4 90877997 90878181 -64751939 + B3A SINE B2 1 182 -16 5 1278 466 221 98 55 chr4 90878229 90878442 -64751678 + L1MD2 LINE L1 5696 5925 -434 5 1278 378 314 105 0 chr4 90880051 90880204 -64749916 + Charlie19a DNA Charlie 68 236 -150 5 1278 188 277 21 0 chr4 90880585 90880632 -64749488 - MER5A DNA MER1_type -88 101 54 5 1278 361 278 82 164 chr4 90880643 90880923 -64749197 - MLT2C1 LTR ERVL -10 387 131 5 1278 216 67 0 0 chr4 90881131 90881161 -64748959 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 5 1278 333 0 0 0 chr4 90881165 90881202 -64748918 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1278 368 321 28 19 chr4 90881203 90881311 -64748809 - PB1D10 SINE Alu -8 109 1 5 1278 296 229 28 14 chr4 90882395 90882490 -64747630 + B4 SINE B4 24 122 -43 5 1278 486 0 0 0 chr4 90882505 90882559 -64747561 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1278 625 279 134 24 chr4 90883307 90883397 -64746723 + Lx8 LINE L1 7144 7242 -231 5 1278 216 0 0 0 chr4 90883397 90883421 -64746699 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 5 1278 625 279 134 24 chr4 90883421 90883583 -64746537 + Lx8 LINE L1 7243 7423 -50 5 1278 195 167 0 0 chr4 90883614 90883656 -64746464 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5 1278 737 296 84 30 chr4 90883666 90883880 -64746240 + B4A SINE B4 1 227 -65 5 1278 474 214 0 0 chr4 90883880 90883969 -64746151 + B1_Mur3 SINE Alu 1 89 -60 5 1278 228 35 0 0 chr4 90883975 90884004 -64746116 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1278 311 146 24 0 chr4 90884001 90884083 -64746037 + (CAGAGA)n Simple_repeat Simple_repeat 6 89 0 5 1278 900 300 75 32 chr4 90884104 90884476 -64745644 + MLT1D LTR MaLR 40 427 -78 5 1278 257 48 48 0 chr4 90884704 90884746 -64745374 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1278 296 284 0 24 chr4 90886673 90886756 -64743364 + GA-rich Low_complexity Low_complexity 6 86 0 5 1278 473 306 54 42 chr4 90887001 90887260 -64742860 - L1MC2 LINE L1 -8 6336 6075 5 1278 221 57 0 28 chr4 90887270 90887306 -64742814 + (CCCTAA)n Simple_repeat Simple_repeat 6 40 0 5 1278 413 246 67 53 chr4 90888515 90888665 -64741455 + L1ME3A LINE L1 6020 6171 -2 5 1278 516 56 0 0 chr4 90889664 90889736 -64740384 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1278 210 191 0 0 chr4 90889762 90889804 -64740316 + GA-rich Low_complexity Low_complexity 5 46 0 5 1278 235 313 169 18 chr4 90889884 90890050 -64740070 - L2b LINE L2 -222 3153 2963 5 1278 558 277 9 0 chr4 90892944 90893056 -64737064 - RSINE1 SINE B4 -51 114 2 5 1278 539 225 39 8 chr4 90893227 90893357 -64736763 + MLT2B4 LTR ERVL 14 147 -373 5 1278 338 314 158 50 chr4 90893357 90893599 -64736521 - MLT2B1 LTR ERVL 0 567 244 5 1278 313 247 11 21 chr4 90893672 90893767 -64736353 - MLT2B1 LTR ERVL -462 94 1 5 1278 644 304 99 51 chr4 90893790 90894164 -64735956 + MLT2B4 LTR ERVL 162 553 -3 5 1278 577 258 85 32 chr4 90901049 90901237 -64728883 + MER58A DNA MER1_type 11 208 -16 5 1278 443 339 8 23 chr4 90901413 90901543 -64728577 - B4A SINE B4 -72 220 93 5 1278 892 275 101 62 chr4 90903289 90903645 -64726475 - MTEa LTR MaLR -9 370 1 5 1278 382 234 138 43 chr4 90904282 90904398 -64725722 + PB1 SINE Alu 1 127 0 5 1278 207 0 0 0 chr4 90904418 90904441 -64725679 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1278 186 43 0 0 chr4 90904778 90904801 -64725319 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 5 1278 1256 190 5 5 chr4 90904901 90905107 -64725013 - B3 SINE B2 -9 207 2 5 1278 312 299 0 20 chr4 90907147 90907246 -64722874 + Lx8 LINE L1 7253 7349 -124 5 1278 233 75 25 0 chr4 90907604 90907644 -64722476 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1278 258 357 63 25 chr4 90908805 90908963 -64721157 - MER5A1 DNA MER1_type -1 165 2 5 1278 216 224 0 39 chr4 90909495 90909546 -64720574 + (CATG)n Simple_repeat Simple_repeat 3 51 0 5 1278 886 241 8 67 chr4 90912318 90912558 -64717562 + URR1A DNA MER1_type 1 226 0 5 1278 378 0 0 0 chr4 90915589 90915631 -64714489 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1278 440 286 57 0 chr4 90916721 90916826 -64713294 + PB1D9 SINE Alu 1 111 -9 5 1278 189 0 0 0 chr4 90916827 90916848 -64713272 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1278 205 167 0 40 chr4 90917199 90917249 -64712871 + T-rich Low_complexity Low_complexity 2 49 0 5 1278 23 0 0 0 chr4 90917376 90917399 -64712721 + AT_rich Low_complexity Low_complexity 1 23 0 5 1278 36 40 0 0 chr4 90917753 90917803 -64712317 + AT_rich Low_complexity Low_complexity 1 50 0 5 1278 22 0 0 0 chr4 90917971 90917993 -64712127 + AT_rich Low_complexity Low_complexity 1 22 0 5 1278 250 179 0 51 chr4 90919482 90919541 -64710579 + A-rich Low_complexity Low_complexity 3 58 0 5 1278 197 86 57 0 chr4 90920505 90920540 -64709580 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1278 22 0 0 0 chr4 90924504 90924526 -64705594 + AT_rich Low_complexity Low_complexity 1 22 0 5 1278 296 219 39 27 chr4 90925104 90925218 -64704902 - PB1 SINE Alu -184 130 7 5 1278 238 374 30 0 chr4 90926581 90926680 -64703440 + Cheshire DNA MER1_type 7 108 -2312 5 1278 244 200 0 52 chr4 90926680 90926738 -64703382 + GA-rich Low_complexity Low_complexity 1 55 0 5 1278 587 307 39 0 chr4 90927043 90927222 -64702898 - MER20 DNA MER1_type -31 188 3 5 1278 180 200 0 0 chr4 90927298 90927338 -64702782 + A-rich Low_complexity Low_complexity 1 40 0 5 1278 238 275 39 108 chr4 90928946 90929048 -64701072 + PB1D7 SINE Alu 26 120 0 5 1278 296 143 18 0 chr4 90929050 90929106 -64701014 + GA-rich Low_complexity Low_complexity 2 58 0 5 1278 255 214 29 50 chr4 90929244 90929329 -64700791 - MER5A1 DNA MER1_type -49 117 37 5 1278 28 0 0 0 chr4 90931389 90931417 -64698703 + AT_rich Low_complexity Low_complexity 1 28 0 5 1278 683 303 63 43 chr4 90931503 90931851 -64698269 - Lx7 LINE L1 -361 7335 6981 5 1278 196 370 45 18 chr4 90933170 90933280 -64696840 + MIR SINE MIR 10 122 -140 5 1278 692 242 0 26 chr4 90933675 90933828 -64696292 - B1F SINE Alu 0 149 1 5 1278 884 174 13 40 chr4 90937426 90937576 -64692544 + B1_Mus1 SINE Alu 3 148 0 5 1278 331 254 121 48 chr4 90937851 90937975 -64692145 + RSINE1 SINE B4 4 136 -29 5 1278 846 153 7 14 chr4 90938031 90938170 -64691950 - B1_Mus1 SINE Alu -2 146 9 5 1278 528 93 0 0 chr4 90941581 90941656 -64688464 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1278 207 0 0 0 chr4 90941685 90941708 -64688412 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 5 1278 589 309 94 90 chr4 90942824 90943049 -64687071 + B4A SINE B4 47 273 -19 5 1278 522 0 0 0 chr4 90943049 90943107 -64687013 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1278 589 309 94 90 chr4 90943107 90943126 -64686994 + B4A SINE B4 274 292 0 5 1278 243 146 0 0 chr4 90943126 90943181 -64686939 + (CCA)n Simple_repeat Simple_repeat 3 57 0 5 1278 22 56 0 0 chr4 90943714 90943750 -64686370 + AT_rich Low_complexity Low_complexity 1 36 0 5 1278 296 373 31 12 chr4 90947055 90947218 -64682902 + MER117 DNA MER1_type 26 191 -6 5 1278 244 298 3 0 chr4 90949576 90949659 -64680461 + ID4 SINE ID 5 88 -64 5 1278 245 152 102 0 chr4 90949708 90949767 -64680353 + B3 SINE B2 146 210 -6 5 1278 405 258 53 30 chr4 90949946 90950078 -64680042 + MIRb SINE MIR 32 166 -102 5 1278 229 275 148 52 chr4 90950382 90950497 -64679623 - MER5A DNA MER1_type -12 177 52 5 1278 252 0 0 0 chr4 90950534 90950562 -64679558 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1278 423 288 0 51 chr4 90950605 90950722 -64679398 - RSINE1 SINE B4 -52 113 3 5 1278 970 305 104 12 chr4 90951423 90952007 -64678113 + Lx8 LINE L1 6831 7468 -5 5 1278 1256 90 11 6 chr4 90952529 90952707 -64677413 - B2_Mm1t SINE B2 -14 179 1 5 1278 23 0 0 0 chr4 90955593 90955616 -64674504 + AT_rich Low_complexity Low_complexity 1 23 0 5 1278 558 0 0 0 chr4 90957386 90957448 -64672672 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1278 227 339 36 86 chr4 90957875 90958014 -64672106 - MIRb SINE MIR -119 149 18 5 1278 303 113 0 0 chr4 90961400 90961453 -64668667 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1278 330 314 19 0 chr4 90961680 90961785 -64668335 - PB1D10 SINE Alu -9 108 2 5 1278 212 322 71 87 chr4 90962166 90962292 -64667828 + B3A SINE B2 45 168 -30 5 1278 234 167 0 0 chr4 90962360 90962396 -64667724 + ID_B1 SINE B4 155 190 -34 6 1278 305 264 103 9 chr4 90963266 90963373 -64666747 + PB1D7 SINE Alu 1 117 -3 6 159 249 219 0 0 chr4 90963945 90963986 -64666134 + ID4_ SINE ID 35 75 -8 6 1279 24 53 0 0 chr4 90964035 90964073 -64666047 + AT_rich Low_complexity Low_complexity 1 38 0 6 1279 665 305 60 0 chr4 90964720 90964920 -64665200 - B3 SINE B2 -4 212 1 6 1279 2630 183 113 29 chr4 90965242 90965834 -64664286 + Lx5 LINE L1 6406 7047 -3 6 1279 189 0 0 0 chr4 90966868 90966889 -64663231 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1279 539 40 14 0 chr4 90966889 90966962 -64663158 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1279 389 322 46 68 chr4 90967354 90967634 -64662486 - B4A SINE B4 -16 276 3 6 1279 405 361 45 0 chr4 90967994 90968127 -64661993 + ID_B1 SINE B4 78 216 -8 6 1279 261 83 0 0 chr4 90968238 90968274 -64661846 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1279 623 274 113 56 chr4 90968669 90969006 -64661114 + ORR1E LTR MaLR 4 359 0 6 1279 528 331 81 46 chr4 90969039 90969346 -64660774 + MER34A LTR ERV1 22 339 -232 6 1279 557 179 17 0 chr4 90969483 90969600 -64660520 + (TATG)n Simple_repeat Simple_repeat 2 120 0 6 1279 590 303 43 16 chr4 90969672 90969874 -64660246 + B3A SINE B2 1 204 -12 6 1279 283 336 105 40 chr4 90970021 90970173 -64659947 + B4 SINE B4 131 292 0 6 1279 297 0 0 0 chr4 90970213 90970246 -64659874 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1279 23 0 0 0 chr4 90970480 90970503 -64659617 + AT_rich Low_complexity Low_complexity 1 23 0 6 1279 404 297 0 10 chr4 90972314 90972416 -64657704 + PB1D10 SINE Alu 12 112 -5 6 1279 282 196 0 0 chr4 90972670 90972716 -64657404 - B1_Mur4 SINE Alu -9 141 96 6 1279 623 261 74 20 chr4 90972929 90973132 -64656988 - Lx8 LINE L1 -181 7292 7079 6 1279 238 292 15 30 chr4 90973815 90973882 -64656238 + ID4 SINE ID 4 69 -14 6 1279 459 0 0 0 chr4 90973898 90973949 -64656171 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1279 432 314 29 0 chr4 90975045 90975185 -64654935 + B1F SINE Alu 3 146 -3 6 1279 34 0 0 0 chr4 90975186 90975220 -64654900 + AT_rich Low_complexity Low_complexity 1 34 0 6 1279 186 43 0 0 chr4 90975936 90975959 -64654161 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1279 203 0 37 0 chr4 90977969 90977996 -64652124 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1279 27 0 0 0 chr4 90978639 90978666 -64651454 + AT_rich Low_complexity Low_complexity 1 27 0 6 1279 207 0 0 0 chr4 90979031 90979054 -64651066 + (TATG)n Simple_repeat Simple_repeat 2 24 0 6 1279 377 311 233 55 chr4 90983195 90983607 -64646513 + MLT1D LTR MaLR 5 486 -19 6 1279 235 296 260 35 chr4 90983660 90983979 -64646141 - L2 LINE L2 -405 3014 2624 6 1279 336 77 0 0 chr4 90984051 90984103 -64646017 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 1279 223 265 181 0 chr4 90984400 90984483 -64645637 + PB1D10 SINE Alu 11 108 -9 6 1279 848 192 7 0 chr4 90984497 90984643 -64645477 + B1_Mur3 SINE Alu 2 148 -1 6 1279 231 114 0 0 chr4 90984644 90984679 -64645441 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 6 1279 309 169 0 0 chr4 90985486 90985545 -64644575 + A-rich Low_complexity Low_complexity 1 59 0 6 1279 199 280 38 57 chr4 90986742 90986848 -64643272 + MIRc SINE MIR 164 267 -1 6 1279 8633 121 21 26 chr4 90987282 90988751 -64641369 + Lx4A LINE L1 5587 7048 -10 6 1279 538 230 49 35 chr4 90989502 90989646 -64640474 - B1F SINE Alu -2 147 2 6 1279 1936 276 79 26 chr4 90991920 90992797 -64637323 + Lx7 LINE L1 6266 7227 -246 6 1279 1451 113 212 125 chr4 90992960 90993304 -64636816 + ORR1C1 LTR MaLR 5 378 0 6 1279 1595 211 24 32 chr4 90993872 90994249 -64635871 + ORR1D1 LTR MaLR 1 374 0 6 1279 448 161 159 11 chr4 90994275 90994363 -64635757 + B1_Mur3 SINE Alu 9 109 -40 6 1279 373 311 9 0 chr4 90994550 90994656 -64635464 + PB1D10 SINE Alu 1 107 -10 6 1279 349 171 23 0 chr4 90996724 90996812 -64633308 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1279 770 201 28 0 chr4 90996822 90996966 -64633154 - B1_Mur3 SINE Alu -1 148 1 6 1279 207 0 0 0 chr4 90996967 90996990 -64633130 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1279 230 329 0 38 chr4 90997073 90997152 -64632968 + A-rich Low_complexity Low_complexity 2 77 0 6 1279 217 248 30 15 chr4 90999026 90999093 -64631027 - L2b LINE L2 -255 3171 3103 6 1279 194 289 54 22 chr4 90999227 90999319 -64630801 - MIR3 SINE MIR -3 205 111 6 1279 224 232 43 14 chr4 91001211 91001281 -64628839 + GA-rich Low_complexity Low_complexity 1 72 0 1 1279 348 242 70 31 chr4 91001604 91001732 -64628388 - MIRb SINE MIR -34 234 102 2 1279 242 246 44 44 chr4 91001871 91001939 -64628181 - MER5B DNA MER1_type -108 70 3 3 1279 409 282 187 22 chr4 91002246 91002380 -64627740 + RSINE1 SINE B4 8 163 -2 4 1279 191 36 36 0 chr4 91003495 91003523 -64626597 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 5 1279 520 218 98 18 chr4 91003547 91003659 -64626461 - B1_Mur3 SINE Alu -24 125 5 6 1279 352 219 80 40 chr4 91003572 91003672 -64626448 - MT2B LTR ERVL -346 255 152 7 1279 180 0 0 0 chr4 91004335 91004355 -64625765 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1279 21 36 0 0 chr4 91005093 91005121 -64624999 + AT_rich Low_complexity Low_complexity 1 28 0 9 1279 305 185 0 36 chr4 91005129 91005185 -64624935 - B2_Mm2 SINE B2 -95 100 47 1 1279 936 84 254 0 chr4 91005228 91005370 -64624750 - B2_Mm1t SINE B2 -14 179 2 1 1279 702 0 0 0 chr4 91005548 91005626 -64624494 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1279 235 337 20 10 chr4 91005660 91005762 -64624358 + MLT1B LTR MaLR 286 388 -2 1 1279 762 256 79 35 chr4 91005979 91006181 -64623939 - B3 SINE B2 -2 214 4 1 1279 808 166 20 27 chr4 91006566 91006715 -64623405 + B1_Mur4 SINE Alu 3 150 0 1 1279 21 0 0 0 chr4 91008048 91008069 -64622051 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 621 0 0 0 chr4 91008287 91008356 -64621764 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1279 478 263 160 48 chr4 91010440 91010628 -64619492 + B3 SINE B2 1 209 -7 1 1279 377 264 90 66 chr4 91012894 91013060 -64617060 - URR1B DNA MER1_type -55 170 1 1 1279 317 234 48 12 chr4 91013461 91013559 -64616561 - B1F2 SINE Alu -15 105 5 2 1279 212 171 0 0 chr4 91014271 91014306 -64615814 + B4A SINE B4 4 38 -254 2 1279 2132 158 115 25 chr4 91014310 91014718 -64615402 - BGLII_A LTR ERVK 0 445 1 2 1279 1661 196 85 0 chr4 91014718 91015131 -64614989 - MYSERV16_I-int LTR ERVK 0 2326 1879 2 1279 559 304 87 4 chr4 91015132 91015363 -64614757 + B4 SINE B4 43 292 0 2 1279 297 250 48 48 chr4 91016967 91017072 -64613048 - PB1D9 SINE Alu -3 117 13 2 1279 261 257 71 0 chr4 91017353 91017423 -64612697 + Charlie1 DNA MER1_type 2644 2718 -63 2 1279 1455 69 16 5 chr4 91017458 91017647 -64612473 + B2_Mm2 SINE B2 1 191 -4 2 1279 779 191 7 14 chr4 91018082 91018220 -64611900 + B1_Mur1 SINE Alu 5 141 -8 2 1279 700 311 22 0 chr4 91018238 91018421 -64611699 + B3 SINE B2 2 188 -28 2 1279 419 267 7 0 chr4 91018424 91018570 -64611550 + (TA)n Simple_repeat Simple_repeat 1 147 0 2 1279 202 188 0 0 chr4 91019498 91019530 -64610590 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 3 1279 28 29 0 0 chr4 91019640 91019675 -64610445 + AT_rich Low_complexity Low_complexity 1 35 0 3 1279 991 200 77 5 chr4 91020805 91021001 -64609119 + B3 SINE B2 1 210 -6 3 1279 287 263 24 84 chr4 91021197 91021280 -64608840 + ID4 SINE ID 3 80 -3 3 1279 225 94 0 0 chr4 91022086 91022118 -64608002 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1279 1477 233 100 43 chr4 91022260 91022771 -64607349 - Lx7 LINE L1 -2 7694 7155 3 1279 276 202 317 0 chr4 91022786 91022890 -64607230 + Lx7 LINE L1 6965 7101 -595 3 1279 258 387 20 72 chr4 91023066 91023110 -64607010 + B4A SINE B4 54 201 -91 3 1279 706 201 7 21 chr4 91023110 91023252 -64606868 + B1_Mur1 SINE Alu 10 149 0 3 1279 21 0 0 0 chr4 91023719 91023740 -64606380 + AT_rich Low_complexity Low_complexity 1 21 0 3 1279 207 0 0 0 chr4 91023892 91023915 -64606205 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1279 520 280 64 0 chr4 91024129 91024254 -64605866 - RSINE1 SINE B4 -30 135 3 4 1279 605 231 7 39 chr4 91024687 91024827 -64605293 + B1_Mur2 SINE Alu 2 139 -10 4 1279 210 37 0 0 chr4 91024827 91024854 -64605266 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1279 605 231 7 39 chr4 91024854 91024866 -64605254 + B1_Mur2 SINE Alu 140 149 0 4 1279 1098 90 0 0 chr4 91026093 91026271 -64603849 + (GA)n Simple_repeat Simple_repeat 1 178 0 4 1279 1065 90 0 0 chr4 91026290 91026467 -64603653 + (GA)n Simple_repeat Simple_repeat 2 178 0 4 1279 216 0 0 0 chr4 91027846 91027870 -64602250 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1279 491 278 25 62 chr4 91030276 91030437 -64599683 + ID_B1 SINE B4 68 222 -2 4 1279 706 181 21 14 chr4 91030444 91030584 -64599536 + B1_Mur3 SINE Alu 9 149 0 4 1279 291 140 0 0 chr4 91031037 91031087 -64599033 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1279 499 74 319 0 chr4 91031832 91031958 -64598162 + MT2B2 LTR ERVL 335 500 -84 4 1279 714 175 76 49 chr4 91034165 91034309 -64595811 + B1_Mur3 SINE Alu 1 148 -1 4 1279 227 289 93 106 chr4 91035534 91035654 -64594466 + MLT1F-int LTR MaLR 752 943 -546 5 1279 244 270 98 33 chr4 91035654 91035746 -64594374 - MER45A DNA Tip100 0 178 81 5 1279 227 289 93 106 chr4 91035746 91035770 -64594350 + MLT1F-int LTR MaLR 944 984 -505 5 1279 205 53 25 50 chr4 91035964 91036004 -64594116 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 5 1279 21 0 0 0 chr4 91036230 91036251 -64593869 + AT_rich Low_complexity Low_complexity 1 21 0 5 1279 192 125 0 0 chr4 91038548 91038580 -64591540 + (CCCCCG)n Simple_repeat Simple_repeat 2 33 0 5 1279 194 0 39 0 chr4 91042023 91042049 -64588071 + (CCCCAG)n Simple_repeat Simple_repeat 1 27 0 5 1279 207 0 0 0 chr4 91042465 91042488 -64587632 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1279 417 39 0 0 chr4 91043735 91043786 -64586334 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1279 603 0 0 0 chr4 91047357 91047424 -64582696 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1279 183 80 0 0 chr4 91048295 91048320 -64581800 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1279 22 0 0 0 chr4 91051268 91051290 -64578830 + AT_rich Low_complexity Low_complexity 1 22 0 6 1279 201 291 144 44 chr4 91053802 91053892 -64576228 - MIRm SINE MIR -132 144 46 6 1279 21 0 0 0 chr4 91055495 91055516 -64574604 + AT_rich Low_complexity Low_complexity 1 21 0 6 1279 342 288 41 41 chr4 91056275 91056398 -64573722 + MIRb SINE MIR 45 167 -101 6 1279 858 171 14 0 chr4 91056448 91056588 -64573532 + B1_Mur3 SINE Alu 2 143 -6 6 1279 613 126 9 9 chr4 91056596 91056708 -64573412 + (GGGGA)n Simple_repeat Simple_repeat 3 114 0 6 1279 714 24 0 0 chr4 91056870 91056954 -64573166 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 6 1279 535 156 23 15 chr4 91056977 91057107 -64573013 + GA-rich Low_complexity Low_complexity 2 132 0 6 1279 423 0 0 0 chr4 91057638 91057685 -64572435 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1279 435 19 0 0 chr4 91057685 91057736 -64572384 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1279 186 71 0 0 chr4 91058678 91058706 -64571414 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1279 24 0 0 0 chr4 91060529 91060553 -64569567 + AT_rich Low_complexity Low_complexity 1 24 0 7 1279 25 51 0 0 chr4 91060666 91060705 -64569415 + AT_rich Low_complexity Low_complexity 1 39 0 7 1279 261 188 50 0 chr4 91061548 91061628 -64568492 + T-rich Low_complexity Low_complexity 5 88 0 7 1279 186 103 0 0 chr4 91062278 91062307 -64567813 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 7 1279 1303 77 10 5 chr4 91062789 91062984 -64567136 + L1_Mus3 LINE L1 6443 6638 0 7 1279 689 209 12 73 chr4 91063030 91063195 -64566925 + RSINE1 SINE B4 11 165 0 7 1279 358 280 0 0 chr4 91063242 91063317 -64566803 + ID4 SINE ID 4 78 -5 7 1279 790 296 5 0 chr4 91063563 91063762 -64566358 + B3 SINE B2 4 203 -13 7 1279 303 26 0 0 chr4 91063762 91063786 -64566334 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 1279 423 0 0 0 chr4 91063786 91063833 -64566287 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1279 303 26 0 0 chr4 91063833 91063846 -64566274 + (TA)n Simple_repeat Simple_repeat 2 14 0 8 1279 26 30 0 0 chr4 91064008 91064041 -64566079 + AT_rich Low_complexity Low_complexity 1 33 0 8 1279 21 71 0 0 chr4 91064174 91064216 -64565904 + AT_rich Low_complexity Low_complexity 1 42 0 8 1279 468 0 0 0 chr4 91066905 91066957 -64563163 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 1279 246 81 0 0 chr4 91066960 91066997 -64563123 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 8 1279 360 0 0 0 chr4 91067055 91067095 -64563025 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1279 450 244 58 8 chr4 91068153 91068278 -64561842 - B1F SINE Alu -9 140 11 8 1279 321 330 115 9 chr4 91068410 91068523 -64561597 - B1F SINE Alu -14 135 11 8 1279 254 240 106 0 chr4 91068735 91068839 -64561281 - MamRep434 DNA TcMar -114 312 198 8 1279 299 355 28 0 chr4 91068848 91068955 -64561165 - PB1D10 SINE Alu -7 110 1 9 1279 724 230 14 52 chr4 91068987 91069196 -64560924 - B3A SINE B2 -13 203 1 9 1279 5471 179 74 10 chr4 91069513 91070675 -64559445 - Lx5 LINE L1 -2 7048 5813 9 1279 604 184 10 0 chr4 91070836 91070939 -64559181 + B1_Mur2 SINE Alu 15 118 -31 9 1279 770 25 82 0 chr4 91070946 91071104 -64559016 + (GA)n Simple_repeat Simple_repeat 2 172 0 9 1279 200 371 80 0 chr4 91072057 91072208 -64557912 + MIRb SINE MIR 80 242 -26 9 1279 260 333 29 98 chr4 91072442 91072615 -64557505 + MLT1J LTR MaLR 224 384 -128 9 1279 216 0 0 0 chr4 91073258 91073282 -64556838 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1279 265 113 16 0 chr4 91074005 91074067 -64556053 - MT2A LTR ERVL -3 530 468 9 1279 205 130 41 55 chr4 91074086 91074159 -64555961 + (TA)n Simple_repeat Simple_repeat 2 73 0 9 1279 1831 167 3 23 chr4 91074169 91074476 -64555644 - MT2A LTR ERVL -232 301 1 9 1279 776 247 124 0 chr4 91074782 91074968 -64555152 - B3 SINE B2 -6 210 2 1 1279 695 279 48 24 chr4 91074998 91075204 -64554916 - B3 SINE B2 -5 211 1 1 1279 228 194 0 0 chr4 91075386 91075422 -64554698 - B3A SINE B2 -160 38 3 1 1279 244 275 57 14 chr4 91076729 91076799 -64553321 + B1_Mus1 SINE Alu 3 75 -73 1 1279 2381 240 2 0 chr4 91076878 91077344 -64552776 + MT2A LTR ERVL 2 468 -65 1 1279 1605 224 50 22 chr4 91077354 91077711 -64552409 - ORR1D1 LTR MaLR -7 367 1 1 1279 420 276 43 119 chr4 91077830 91078056 -64552064 - MLT1D LTR MaLR -402 225 2 1 1279 21 0 0 0 chr4 91078895 91078916 -64551204 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 21 0 0 0 chr4 91079480 91079501 -64550619 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 1272 20 0 0 chr4 91079965 91080118 -64550002 - L1Md_F2 LINE L1 -736 5846 5694 1 1279 333 62 46 15 chr4 91080118 91080183 -64549937 + L1Md_F2 LINE L1 6513 6579 -3 1 1279 378 0 0 0 chr4 91080273 91080315 -64549805 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1279 384 326 0 0 chr4 91080325 91080414 -64549706 - B3A SINE B2 -44 154 66 1 1279 275 339 0 129 chr4 91080696 91080889 -64549231 + MLT2B4 LTR ERVL 4 171 -385 1 1279 618 339 30 60 chr4 91080955 91080987 -64549133 - B4A SINE B4 -55 237 208 1 1279 2296 177 112 60 chr4 91080987 91081534 -64548586 - RMER15 LTR ERVL 0 575 1 1 1279 618 339 30 60 chr4 91081534 91081736 -64548384 - B4A SINE B4 -85 207 10 1 1279 192 150 0 0 chr4 91081757 91081770 -64548350 + (T)n Simple_repeat Simple_repeat 1 13 0 1 1279 1034 88 0 92 chr4 91081770 91081933 -64548187 - B1_Mus1 SINE Alu 0 148 1 1 1279 192 150 0 0 chr4 91081933 91081959 -64548161 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1279 26 0 0 0 chr4 91082114 91082140 -64547980 + AT_rich Low_complexity Low_complexity 1 26 0 1 1279 672 288 0 25 chr4 91082141 91082298 -64547822 - RSINE1 SINE B4 0 165 13 1 1279 432 0 0 0 chr4 91082424 91082472 -64547648 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1279 216 0 0 0 chr4 91082518 91082542 -64547578 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1279 249 83 0 0 chr4 91082561 91082597 -64547523 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1279 508 269 59 80 chr4 91082913 91083151 -64546969 - LTR78 LTR ERV1 -4 1300 1068 1 1279 290 226 16 16 chr4 91083374 91083437 -64546683 - PB1D10 SINE Alu -8 109 47 1 1279 298 329 94 21 chr4 91084378 91084647 -64545473 + ORR1E LTR MaLR 50 364 -15 1 1279 382 205 53 58 chr4 91084694 91084865 -64545255 - MER96B DNA hAT -200 217 48 1 1279 306 209 66 0 chr4 91084876 91084967 -64545153 - L1MB8 LINE L1 -10 6168 6072 1 1279 486 96 0 0 chr4 91084973 91085046 -64545074 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1279 462 338 165 0 chr4 91085099 91085232 -64544888 - RSINE1 SINE B4 -8 157 3 1 1279 396 326 0 77 chr4 91085282 91085438 -64544682 - RSINE1 SINE B4 -19 146 3 1 1279 755 219 120 0 chr4 91085483 91085675 -64544445 + B3 SINE B2 2 216 0 1 1279 30 59 0 0 chr4 91086216 91086267 -64543853 + AT_rich Low_complexity Low_complexity 1 51 0 1 1279 1192 292 81 63 chr4 91086270 91086881 -64543239 - Lx8 LINE L1 -9 7464 6841 1 1279 1629 162 98 11 chr4 91086881 91087167 -64542953 + RLTR10E LTR ERVK 1 311 0 1 1279 1192 292 81 63 chr4 91087167 91087187 -64542933 - Lx8 LINE L1 -633 6840 6822 1 1279 2019 138 32 0 chr4 91087362 91087673 -64542447 - ORR1A4 LTR MaLR -8 321 1 1 1279 329 293 53 0 chr4 91087744 91087877 -64542243 - L1MB2 LINE L1 -89 6082 5943 1 1279 1052 128 157 10 chr4 91087933 91088130 -64541990 + URR1A DNA MER1_type 1 226 0 1 1279 397 214 54 20 chr4 91088541 91088689 -64541431 - L1MA9 LINE L1 -145 6167 6015 1 1279 782 297 57 14 chr4 91088688 91089112 -64541008 - L1M3 LINE L1 -1479 4661 4220 1 1279 1045 272 96 15 chr4 91089219 91089551 -64540569 - Lx6 LINE L1 -17 7443 7085 1 1279 792 189 7 7 chr4 91089682 91089826 -64540294 - B1_Mur3 SINE Alu -1 148 5 1 1279 25 0 0 0 chr4 91089845 91089870 -64540250 + AT_rich Low_complexity Low_complexity 1 25 0 1 1279 628 302 74 35 chr4 91090373 91090603 -64539517 - L1M3 LINE L1 -2314 3826 3606 1 1279 792 154 220 39 chr4 91090603 91090785 -64539335 - B3 SINE B2 0 216 2 1 1279 628 302 74 35 chr4 91090785 91090931 -64539189 - L1M3 LINE L1 -2535 3605 3435 1 1279 445 263 133 114 chr4 91091079 91091111 -64539009 - L1M3 LINE L1 -2695 3448 3403 1 1279 288 0 0 0 chr4 91091111 91091143 -64538977 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1279 445 263 133 114 chr4 91091143 91091470 -64538650 - L1M3 LINE L1 -2741 3402 3083 1 1279 23 0 0 0 chr4 91091905 91091928 -64538192 + AT_rich Low_complexity Low_complexity 1 23 0 1 1279 664 207 34 34 chr4 91091947 91092096 -64538024 - B3 SINE B2 -6 210 44 1 1279 22 35 0 0 chr4 91092175 91092204 -64537916 + AT_rich Low_complexity Low_complexity 1 29 0 1 1279 544 286 40 0 chr4 91092574 91092700 -64537420 + RSINE1 SINE B4 2 132 -33 1 1279 426 20 0 0 chr4 91092755 91092806 -64537314 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1279 184 91 22 22 chr4 91092842 91092887 -64537233 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1279 225 0 0 0 chr4 91094067 91094092 -64536028 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1279 247 188 83 111 chr4 91094329 91094437 -64535683 - Lx8 LINE L1 -2 7471 7367 1 1279 23 0 0 0 chr4 91094947 91094970 -64535150 + AT_rich Low_complexity Low_complexity 1 23 0 1 1280 595 317 26 114 chr4 91095779 91096164 -64533956 + MTEa LTR MaLR 1 351 -28 1 1280 537 198 141 0 chr4 91096328 91096449 -64533671 + B1_Mur2 SINE Alu 5 142 -7 1 1280 647 207 297 21 chr4 91096449 91096870 -64533250 - RMER1B Other Other -224 842 268 1 1280 248 288 82 0 chr4 91096875 91096948 -64533172 + RSINE1 SINE B4 70 148 -17 1 1280 31788 68 1 13 chr4 91097051 91100913 -64529207 + L1Md_F2 LINE L1 631 4430 -1453 1 1280 2741 54 0 14 chr4 91100913 91101270 -64528850 + L1Md_F3 LINE L1 6219 6570 -14 1 1280 31788 62 1 9 chr4 91101270 91102443 -64527677 + L1Md_F2 LINE L1 4431 5586 -297 1 1280 7576 63 8 4 chr4 91102443 91103420 -64526700 + L1Md_F2 LINE L1 5587 6567 -15 1 1280 250 293 0 17 chr4 91103521 91103580 -64526540 - ID4 SINE ID -22 61 4 1 1280 753 59 0 10 chr4 91103787 91103895 -64526225 + L1Md_T LINE L1 5495 5616 -684 1 1280 8494 30 0 1 chr4 91103895 91104891 -64525229 + L1Md_T LINE L1 5588 6582 0 1 1280 342 0 0 0 chr4 91105441 91105479 -64524641 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1280 261 0 0 0 chr4 91105479 91105507 -64524613 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1280 364 315 115 68 chr4 91105507 91105742 -64524378 - B4 SINE B4 -16 276 31 1 1280 599 259 65 21 chr4 91105765 91105970 -64524150 - B3A SINE B2 -5 211 1 1 1280 256 231 46 0 chr4 91106030 91106095 -64524025 + CT-rich Low_complexity Low_complexity 3 70 0 1 1280 213 274 0 0 chr4 91106101 91106152 -64523968 - PB1D9 SINE Alu -2 118 68 1 1280 677 167 0 27 chr4 91106168 91106338 -64523782 + CT-rich Low_complexity Low_complexity 16 180 0 1 1280 1286 78 0 6 chr4 91106338 91106519 -64523601 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1280 677 167 0 27 chr4 91106519 91106533 -64523587 + polypyrimidine Low_complexity Low_complexity 2 15 0 1 1280 219 36 0 0 chr4 91108674 91108702 -64521418 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 1 1280 699 144 0 0 chr4 91108731 91108856 -64521264 + (GGGAGA)n Simple_repeat Simple_repeat 6 130 0 1 1280 1009 229 0 19 chr4 91109139 91109344 -64520776 + B3 SINE B2 1 201 -15 1 1280 3161 186 61 10 chr4 91109344 91110014 -64520106 + Lx6 LINE L1 296 999 -6729 1 1280 635 181 8 8 chr4 91110017 91110134 -64519986 - MTB_Mm LTR MaLR 0 407 291 1 1280 5528 236 79 45 chr4 91110141 91111592 -64518528 + Lx6 LINE L1 5749 7299 -161 1 1280 1200 48 7 0 chr4 91111592 91111737 -64518383 + B1_Mus2 SINE Alu 2 147 0 1 1280 4056 226 82 49 chr4 91111737 91111938 -64518182 + Lx6 LINE L1 7300 7456 -4 1 1280 202 232 14 42 chr4 91111945 91112017 -64518103 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 1 1280 584 309 42 5 chr4 91112133 91112322 -64517798 + MTD LTR MaLR 1 196 -223 1 1280 532 180 22 0 chr4 91112338 91112427 -64517693 + MTD LTR MaLR 272 362 -57 1 1280 266 0 0 29 chr4 91112786 91112821 -64517299 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1280 329 355 86 29 chr4 91113008 91113217 -64516903 + MIR SINE MIR 12 232 -30 1 1280 2930 161 27 90 chr4 91113479 91114215 -64515905 - RMER6C LTR ERVK 0 690 1 1 1280 252 0 0 0 chr4 91115286 91115314 -64514806 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1280 316 271 68 41 chr4 91115403 91115549 -64514571 - L1M5 LINE L1 -2745 3401 3252 1 1280 342 0 0 0 chr4 91116312 91116350 -64513770 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1280 1419 333 113 39 chr4 91116432 91117053 -64513067 + MER21B LTR ERV1 13 679 -184 1 1280 1525 70 9 9 chr4 91117229 91117446 -64512674 - L1_Mus3 LINE L1 0 6638 6422 1 1280 1461 257 82 16 chr4 91118153 91118603 -64511517 + Lx6 LINE L1 6981 7460 0 1 1280 492 93 0 0 chr4 91118788 91118863 -64511257 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1280 423 0 0 0 chr4 91118863 91118909 -64511211 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1280 339 413 0 28 chr4 91118981 91119158 -64510962 + L1MEf LINE L1 605 776 -5466 1 1280 195 159 0 0 chr4 91119188 91119210 -64510910 + A-rich Low_complexity Low_complexity 1 22 0 1 1280 453 150 25 12 chr4 91119210 91119291 -64510829 + ID4 SINE ID 2 83 0 1 1280 195 159 0 0 chr4 91119291 91119312 -64510808 + A-rich Low_complexity Low_complexity 23 43 0 1 1280 384 249 141 15 chr4 91119364 91119647 -64510473 + L1MEf LINE L1 2269 2577 -3569 1 1280 489 286 52 10 chr4 91119772 91120080 -64510040 + L1MEf LINE L1 4352 4688 -1458 1 1280 618 219 98 0 chr4 91120197 91120355 -64509765 + ORR1D1 LTR MaLR 155 328 -46 1 1280 1705 186 63 48 chr4 91120355 91120683 -64509437 + ORR1C2 LTR MaLR 1 345 -39 1 1280 3211 71 55 7 chr4 91120683 91121136 -64508984 + L1_Mus3 LINE L1 6161 6635 -3 1 1280 1705 186 63 48 chr4 91121136 91121185 -64508935 + ORR1C2 LTR MaLR 346 384 0 1 1280 345 315 114 10 chr4 91121265 91121495 -64508625 + Lx7 LINE L1 6957 7233 -240 1 1280 459 0 0 0 chr4 91121495 91121546 -64508574 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1280 284 321 101 18 chr4 91121546 91121576 -64508544 + Lx7 LINE L1 7234 7262 -211 1 1280 318 87 0 0 chr4 91121650 91121696 -64508424 + (GGA)n Simple_repeat Simple_repeat 3 48 0 2 1280 473 285 86 11 chr4 91122029 91122203 -64507917 - MER58A DNA MER1_type 0 224 38 2 1280 394 211 198 24 chr4 91122476 91122602 -64507518 - B1F SINE Alu -1 148 1 2 1280 3355 200 31 43 chr4 91123075 91123860 -64506260 - Lx5 LINE L1 -4 7046 6272 2 1280 8483 147 56 33 chr4 91123856 91124081 -64506039 - Lx5 LINE L1 -974 6076 5849 2 1280 2165 128 12 0 chr4 91124081 91124402 -64505718 - ORR1A3 LTR MaLR 0 326 2 2 1280 8483 144 21 14 chr4 91124402 91125906 -64504214 - Lx5 LINE L1 -29 5848 4328 2 1280 28807 83 34 6 chr4 91125923 91131309 -64498811 - Lx3_Mus LINE L1 -6 7003 1446 2 1280 243 0 0 0 chr4 91131611 91131638 -64498482 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1280 533 253 24 136 chr4 91131751 91131863 -64498257 - B3 SINE B2 -30 186 85 2 1280 246 125 0 0 chr4 91131863 91131911 -64498209 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2 1280 533 253 24 136 chr4 91131911 91132004 -64498116 - B3 SINE B2 -132 84 4 2 1280 1052 110 0 0 chr4 91132020 91132166 -64497954 - B1_Mus2 SINE Alu 0 147 2 2 1280 2796 59 0 34 chr4 91132194 91132577 -64497543 - L1_Mus1 LINE L1 -1 6566 6197 2 1280 301 306 144 58 chr4 91132577 91132846 -64497274 + L1M5 LINE L1 5096 5388 -758 2 1280 905 249 79 0 chr4 91132885 91133126 -64496994 + MTD LTR MaLR 18 277 -142 2 1280 235 288 27 0 chr4 91133147 91133220 -64496900 + MTD LTR MaLR 345 419 0 2 1280 32368 67 1 16 chr4 91133744 91138924 -64491196 + L1Md_F2 LINE L1 487 5586 -297 2 1280 8091 50 1 0 chr4 91138924 91139919 -64490201 + L1Md_F2 LINE L1 5587 6582 0 2 1280 735 211 42 0 chr4 91140310 91140452 -64489668 + B1_Mur3 SINE Alu 2 149 0 2 1280 603 314 126 31 chr4 91140562 91140848 -64489272 + ORR1E LTR MaLR 47 359 0 2 1280 239 179 15 15 chr4 91140950 91141018 -64489102 - Lx2B LINE L1 -1 6999 6932 2 1280 5364 73 0 0 chr4 91141054 91141738 -64488382 - Lx3_Mus LINE L1 0 7009 6326 2 1280 387 0 0 0 chr4 91141810 91141853 -64488267 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1280 331 302 14 28 chr4 91142210 91142353 -64487767 + L1MC4 LINE L1 7859 7999 -43 2 1280 811 151 218 24 chr4 91142481 91142651 -64487469 + B3 SINE B2 1 203 -13 2 1280 209 174 0 42 chr4 91142705 91142753 -64487367 + A-rich Low_complexity Low_complexity 2 47 0 2 1280 299 231 173 12 chr4 91143246 91143408 -64486712 + Lx8 LINE L1 7282 7469 -4 2 1280 365 259 82 35 chr4 91145198 91145430 -64484690 - Lx9 LINE L1 -23 7621 7379 2 1280 907 247 56 49 chr4 91145474 91145798 -64484322 - Lx9 LINE L1 -372 7272 6947 2 1280 2582 240 26 28 chr4 91146123 91146846 -64483274 - Lx9 LINE L1 -707 6937 6216 2 1280 1586 182 28 47 chr4 91149937 91150300 -64479820 + Lx5 LINE L1 6683 7038 -12 2 1280 1018 241 0 10 chr4 91150492 91150689 -64479431 - B3 SINE B2 -21 195 1 2 1280 2999 150 21 0 chr4 91151368 91151896 -64478224 + L1_Mur1 LINE L1 4922 5460 -426 2 1280 3859 138 10 14 chr4 91151893 91152102 -64478018 + L1_Mur1 LINE L1 3273 3487 -2399 2 1280 450 0 0 0 chr4 91152102 91152152 -64477968 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 1280 3859 138 10 14 chr4 91152152 91152642 -64477478 + L1_Mur1 LINE L1 3488 3969 -1917 2 1280 21 0 0 0 chr4 91152961 91152982 -64477138 + AT_rich Low_complexity Low_complexity 1 21 0 2 1280 1177 56 0 0 chr4 91152987 91153130 -64476990 + B1_Mus2 SINE Alu 5 147 0 2 1280 410 287 16 31 chr4 91153170 91153364 -64476756 - Lx6 LINE L1 -26 7434 7244 2 1280 45 19 0 0 chr4 91153441 91153493 -64476627 + AT_rich Low_complexity Low_complexity 1 52 0 2 1280 1225 186 5 0 chr4 91153493 91153708 -64476412 - B3 SINE B2 0 216 1 2 1280 26 0 0 0 chr4 91154142 91154168 -64475952 + AT_rich Low_complexity Low_complexity 1 26 0 2 1280 36131 30 0 0 chr4 91154168 91160377 -64469743 - L1Md_T LINE L1 0 6585 278 2 1280 372 244 73 0 chr4 91160486 91160568 -64469552 + ID_B1 SINE B4 3 90 -134 2 1280 243 88 0 0 chr4 91160614 91160648 -64469472 + (TAAG)n Simple_repeat Simple_repeat 2 35 0 2 1280 6775 157 72 7 chr4 91160944 91162211 -64467909 - Lx4A LINE L1 0 7058 5710 2 1280 4783 118 44 3 chr4 91162202 91162978 -64467142 + Lx4A LINE L1 4893 5700 -177 2 1280 472 286 90 8 chr4 91163938 91164072 -64466048 + RSINE1 SINE B4 3 147 -18 2 1280 211 28 0 53 chr4 91164584 91164622 -64465498 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1280 333 253 67 33 chr4 91165536 91165623 -64464497 + RMER5 LTR ERV1 34 123 -411 2 1280 822 192 14 0 chr4 91165623 91165769 -64464351 + B1_Mus1 SINE Alu 1 148 0 2 1280 387 60 0 0 chr4 91165771 91165821 -64464299 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1280 843 291 160 16 chr4 91165821 91166184 -64463936 + RMER5 LTR ERV1 118 532 -2 2 1280 2248 216 20 11 chr4 91167018 91167468 -64462652 - Lx5 LINE L1 -12 7038 6585 2 1280 5717 157 52 27 chr4 91167458 91168549 -64461571 - Lx3C LINE L1 -225 6751 5633 2 1280 222 37 0 0 chr4 91168584 91168611 -64461509 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 1280 605 328 76 34 chr4 91169071 91169308 -64460812 + MER89 LTR ERV1 58 304 -255 2 1280 600 125 62 10 chr4 91170402 91170499 -64459621 + MTD LTR MaLR 1 102 -317 2 1280 571 260 137 6 chr4 91170485 91170667 -64459453 + MTD LTR MaLR 214 419 0 2 1280 815 302 91 89 chr4 91170701 91171217 -64458903 + RLTR18 LTR ERVK 3 519 -97 2 1280 2332 226 63 57 chr4 91171210 91171824 -64458296 + MTC-int LTR MaLR 514 1131 -127 2 1280 925 256 36 21 chr4 91171825 91172101 -64458019 + MTD LTR MaLR 6 282 -118 2 1280 1380 285 10 94 chr4 91172104 91172604 -64457516 + Lx6 LINE L1 6968 7425 -35 2 1280 1027 222 53 0 chr4 91172649 91172856 -64457264 + MTD LTR MaLR 194 411 -8 2 1280 315 0 0 0 chr4 91173353 91173388 -64456732 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1280 495 0 0 0 chr4 91173388 91173442 -64456678 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1280 376 289 38 13 chr4 91173466 91173624 -64456496 + L1_Mur3 LINE L1 4356 4517 -1363 2 1280 207 0 0 0 chr4 91173658 91173681 -64456439 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1280 380 230 0 11 chr4 91173681 91173769 -64456351 - RMER12 LTR ERVK -472 850 764 2 1280 1351 102 54 0 chr4 91173870 91174075 -64456045 - L1Md_F2 LINE L1 -12 6570 6355 2 1280 570 43 0 0 chr4 91174075 91174144 -64455976 + L1Md_F2 LINE L1 6283 6351 -231 2 1280 905 299 50 24 chr4 91174151 91174531 -64455589 - L1MA4 LINE L1 -401 5899 5510 2 1280 425 260 11 2 chr4 91174534 91174686 -64455434 - L1M2 LINE L1 -1462 4678 4519 2 1280 766 315 34 75 chr4 91174688 91174980 -64455140 + B4A SINE B4 11 290 -2 2 1280 924 51 0 0 chr4 91174984 91175102 -64455018 + (CA)n Simple_repeat Simple_repeat 1 118 0 2 1280 337 267 87 93 chr4 91175124 91175285 -64454835 - RMER2 LTR ERV1 -79 488 329 2 1280 2119 285 65 65 chr4 91175531 91176813 -64453307 - L1M2 LINE L1 -1926 4217 2936 2 1280 5840 226 36 43 chr4 91177535 91178943 -64451177 - Lx5 LINE L1 -210 6766 5393 2 1280 198 0 0 0 chr4 91178943 91178965 -64451155 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 1280 5840 229 110 31 chr4 91178965 91180523 -64449597 - Lx5 LINE L1 -485 5392 3695 2 1280 9903 145 2 6 chr4 91180548 91182220 -64447900 - L1_Mur1 LINE L1 -1326 4560 2895 2 1280 263 313 30 0 chr4 91182216 91182315 -64447805 + L1MD LINE L1 3593 3694 -2452 2 1280 1235 314 42 38 chr4 91182321 91183267 -64446853 + L1MA4A LINE L1 4851 5869 -434 2 1280 396 323 126 34 chr4 91183267 91183586 -64446534 + L1M2 LINE L1 4564 4921 -1222 2 1280 2083 168 14 65 chr4 91183586 91184001 -64446119 + ORR1B1 LTR MaLR 1 394 0 2 1280 396 323 126 34 chr4 91184001 91184062 -64446058 + L1M2 LINE L1 4922 4979 -1164 2 1280 434 269 49 55 chr4 91184089 91184290 -64445830 + L1M2 LINE L1 5363 5596 -704 2 1280 282 56 0 0 chr4 91184834 91184870 -64445250 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 2 1280 595 348 42 27 chr4 91185839 91186315 -64443805 + L1ME1 LINE L1 5342 5824 -355 2 1280 1193 55 0 0 chr4 91186319 91186465 -64443655 + B1_Mus2 SINE Alu 2 147 0 2 1280 228 224 0 0 chr4 91186603 91186670 -64443450 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1280 381 277 68 42 chr4 91186672 91186864 -64443256 + L1ME1 LINE L1 5967 6163 -16 2 1280 1183 187 27 0 chr4 91187327 91187546 -64442574 - URR1B DNA MER1_type 0 225 1 2 1280 27 0 0 0 chr4 91187660 91187687 -64442433 + AT_rich Low_complexity Low_complexity 1 27 0 2 1280 1087 136 27 0 chr4 91187688 91187872 -64442248 - Lx2 LINE L1 -6 6991 6803 2 1280 3056 92 14 2 chr4 91187880 91188305 -64441815 - Lx2 LINE L1 -352 6645 6216 2 1280 231 306 14 0 chr4 91188519 91188591 -64441529 - Lx8 LINE L1 -412 7061 6989 2 1280 233 267 83 0 chr4 91188613 91188673 -64441447 - PB1D10 SINE Alu -47 70 6 2 1280 22 0 0 0 chr4 91188719 91188741 -64441379 + AT_rich Low_complexity Low_complexity 1 22 0 2 1280 233 311 21 53 chr4 91189250 91189345 -64440775 - MIRb SINE MIR -156 112 21 2 1280 489 76 0 0 chr4 91190682 91190748 -64439372 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1280 856 164 0 0 chr4 91190956 91191096 -64439024 + B1_Mur2 SINE Alu 1 140 -9 2 1280 180 135 0 0 chr4 91191383 91191420 -64438700 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1280 212 295 22 133 chr4 91192312 91192402 -64437718 + PB1D10 SINE Alu 30 109 -8 2 1280 277 217 81 45 chr4 91192409 91192520 -64437600 + Lx8 LINE L1 7353 7467 -6 2 1280 1053 89 7 40 chr4 91193019 91193171 -64436949 - B1_Mus2 SINE Alu 0 147 1 2 1280 2883 82 0 15 chr4 91193228 91193634 -64436486 + BGLII LTR ERVK 1 400 -21 2 1280 733 71 0 0 chr4 91193624 91193722 -64436398 + BGLII LTR ERVK 324 421 0 2 1280 819 261 133 34 chr4 91194098 91194391 -64435729 - Lx8 LINE L1 0 7473 7152 2 1280 2451 243 69 62 chr4 91194404 91195142 -64434978 + RCHARR1 DNA MER1_type 3 745 -229 2 1280 399 174 123 14 chr4 91195188 91195334 -64434786 + RCHARR1 DNA MER1_type 733 894 -80 2 1280 5889 113 31 1 chr4 91195383 91196271 -64433849 + Lx3B LINE L1 6053 6967 -6 2 1280 180 200 0 0 chr4 91196275 91196320 -64433800 + A-rich Low_complexity Low_complexity 4 48 0 2 1280 31 104 0 0 chr4 91196544 91196659 -64433461 + AT_rich Low_complexity Low_complexity 1 115 0 2 1280 185 294 59 0 chr4 91196850 91196918 -64433202 + MIRc SINE MIR 86 157 -111 2 1280 685 290 91 5 chr4 91197023 91197204 -64432916 + B3 SINE B2 1 197 -19 2 1280 3936 134 113 8 chr4 91197204 91197867 -64432253 + RMER19A LTR ERVK 1 733 -4 2 1280 636 281 7 0 chr4 91198481 91198620 -64431500 + RSINE1 SINE B4 12 151 -14 2 1280 1114 270 19 22 chr4 91198686 91199050 -64431070 + L1MA4 LINE L1 4630 4992 -1151 2 1280 184 0 62 31 chr4 91199051 91199083 -64431037 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1280 529 287 95 60 chr4 91199094 91199576 -64430544 + L1_Rod LINE L1 4908 5406 -441 3 1280 4350 138 32 29 chr4 91199584 91199956 -64430164 - RMER6A LTR ERVK -2 754 368 3 1280 2980 23 3 0 chr4 91199956 91200301 -64429819 - ORR1A0 LTR MaLR 0 346 1 3 1280 4350 138 32 29 chr4 91200301 91200680 -64429440 - RMER6A LTR ERVK -389 367 1 3 1280 981 286 60 44 chr4 91200684 91201137 -64428983 + L1MA4 LINE L1 5471 5930 -370 2 1280 24 0 0 0 chr4 91201449 91201473 -64428647 + AT_rich Low_complexity Low_complexity 1 24 0 3 1280 435 312 72 0 chr4 91202102 91202240 -64427880 - B1F SINE Alu 0 149 2 3 1280 465 366 65 50 chr4 91202615 91202894 -64427226 + B4 SINE B4 2 284 -8 3 1280 774 105 0 0 chr4 91203116 91203230 -64426890 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 3 1280 414 0 0 0 chr4 91203230 91203276 -64426844 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1280 1084 103 0 0 chr4 91203288 91203433 -64426687 - B1_Mus1 SINE Alu -2 146 2 3 1280 252 0 0 0 chr4 91203537 91203565 -64426555 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1280 222 37 0 0 chr4 91204853 91204880 -64425240 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1280 2375 87 78 16 chr4 91204880 91205267 -64424853 + IAPLTR2a LTR ERVK 1 411 0 3 1280 620 328 104 9 chr4 91205540 91205866 -64424254 + L1_Mur2 LINE L1 281 637 -6075 3 1280 254 89 267 0 chr4 91205863 91205908 -64424212 + Lx5 LINE L1 4245 4301 -1576 3 1280 4840 196 226 17 chr4 91205907 91206058 -64424062 + Lx5 LINE L1 4274 4423 -1463 3 1280 3305 45 2 5 chr4 91206058 91206455 -64423665 - MTA_Mm LTR MaLR 0 396 1 3 1280 5871 195 91 19 chr4 91206455 91208690 -64421430 + Lx5 LINE L1 4424 6932 -44 3 1280 1332 198 23 40 chr4 91208699 91208999 -64421121 + Lx5 LINE L1 6743 7037 -13 3 1280 335 60 20 0 chr4 91209002 91209052 -64421068 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 3 1280 258 32 0 0 chr4 91209248 91209279 -64420841 + (ATG)n Simple_repeat Simple_repeat 1 31 0 3 1280 513 319 6 18 chr4 91209827 91209996 -64420124 + LFSINE_Vert SINE SINE 10 176 -283 3 1280 444 132 0 0 chr4 91210577 91210660 -64419460 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1280 448 235 9 29 chr4 91211338 91211443 -64418677 - B4 SINE B4 -188 104 2 3 1280 267 152 0 0 chr4 91211495 91211541 -64418579 + CT-rich Low_complexity Low_complexity 2 47 0 3 1280 291 376 0 10 chr4 91211613 91211715 -64418405 - B3A SINE B2 -96 102 2 3 1280 374 0 22 0 chr4 91212252 91212298 -64417822 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 1280 8331 33 1 4 chr4 91212305 91213601 -64416519 - L1Md_F2 LINE L1 0 6582 5290 3 1280 5246 64 0 3 chr4 91213596 91214297 -64415823 - L1Md_F2 LINE L1 -1980 3903 3205 3 1280 294 267 131 19 chr4 91214573 91214680 -64415440 - PB1D9 SINE Alu -1 119 1 3 1280 604 268 10 54 chr4 91214741 91214946 -64415174 - B3A SINE B2 0 198 3 3 1280 23 33 0 0 chr4 91215126 91215156 -64414964 + AT_rich Low_complexity Low_complexity 1 30 0 3 1280 228 67 0 0 chr4 91216329 91216359 -64413761 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 3 1280 573 283 94 8 chr4 91216362 91216629 -64413491 - MER45B DNA Tip100 -61 979 690 3 1280 303 287 155 9 chr4 91216668 91216784 -64413336 - B1_Mur1 SINE Alu 0 149 17 3 1280 324 317 106 67 chr4 91216691 91216881 -64413239 - B4 SINE B4 -83 209 1 3 1280 1050 310 85 95 chr4 91216895 91217001 -64413119 - MTE-int LTR MaLR -133 1447 1358 3 1280 1633 36 0 0 chr4 91217001 91217193 -64412927 + B2_Mm1a SINE B2 2 193 0 3 1280 1050 310 85 95 chr4 91217193 91217824 -64412296 - MTE-int LTR MaLR -223 1357 717 3 1280 181 135 0 37 chr4 91217917 91217971 -64412149 + T-rich Low_complexity Low_complexity 2 53 0 3 1280 841 46 0 0 chr4 91217973 91218081 -64412039 - B1_Mm SINE Alu 0 147 40 3 1280 343 186 88 55 chr4 91218016 91218107 -64412013 - RLTR25B LTR ERVK -519 509 416 3 1280 31 26 0 0 chr4 91218293 91218331 -64411789 + AT_rich Low_complexity Low_complexity 1 38 0 3 1280 253 245 109 69 chr4 91218332 91218433 -64411687 - MTE-int LTR MaLR -1110 470 366 3 1280 514 307 49 56 chr4 91218549 91218711 -64411409 + RSINE1 SINE B4 3 163 -2 3 1280 423 38 0 0 chr4 91218716 91218769 -64411351 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1280 375 23 0 0 chr4 91218779 91218823 -64411297 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1280 45 34 0 0 chr4 91218824 91218883 -64411237 + AT_rich Low_complexity Low_complexity 1 59 0 3 1280 885 241 18 23 chr4 91218889 91219106 -64411014 + B3 SINE B2 1 216 0 3 1280 707 107 7 22 chr4 91220045 91220182 -64409938 + B1_Mm SINE Alu 19 149 0 3 1280 841 257 14 23 chr4 91220304 91220519 -64409601 - B3 SINE B2 0 216 4 3 1280 234 128 0 0 chr4 91220914 91220953 -64409167 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1280 2940 198 85 39 chr4 91222041 91222734 -64407386 - Lx7 LINE L1 -617 7079 6355 3 1280 333 68 0 0 chr4 91223102 91223146 -64406974 + (CTTAT)n Simple_repeat Simple_repeat 2 45 0 3 1280 405 0 0 0 chr4 91223245 91223290 -64406830 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1280 546 89 0 0 chr4 91223290 91223380 -64406740 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 1280 440 300 130 12 chr4 91225318 91225649 -64404471 + L1M5 LINE L1 3845 4214 -1932 3 19 1268 285 83 53 chr4 91225737 91226618 -64403502 - L1_Mur3 LINE L1 -3304 2576 1670 3 1281 7500 58 3 0 chr4 91226628 91227845 -64402275 + L1_Mus1 LINE L1 5327 6547 -20 3 1281 307 247 0 0 chr4 91227893 91227982 -64402138 - L1_Mur3 LINE L1 -4258 1622 1534 3 1281 610 206 141 47 chr4 91228086 91228329 -64401791 + Lx6 LINE L1 7254 7691 -5 3 1281 267 311 37 18 chr4 91228358 91228522 -64401598 - L1_Rod LINE L1 -4444 1403 1237 3 1281 755 81 22 29 chr4 91229052 91229191 -64400929 + (TTTCC)n Simple_repeat Simple_repeat 2 139 0 3 1281 243 329 0 12 chr4 91229210 91229290 -64400830 - MTEb LTR MaLR -196 183 105 3 1281 1619 289 126 8 chr4 91229346 91229876 -64400244 - MTE-int LTR MaLR -7 1573 981 3 1281 275 253 28 149 chr4 91229895 91230002 -64400118 + MTEb LTR MaLR 243 336 -43 3 1281 282 29 0 0 chr4 91230236 91230271 -64399849 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1281 309 289 95 15 chr4 91230342 91230479 -64399641 + L1MEf LINE L1 1392 1539 -4661 3 1281 479 218 0 19 chr4 91230496 91230599 -64399521 + B1_Mm SINE Alu 47 147 0 3 1281 266 87 0 21 chr4 91230602 91230649 -64399471 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 1281 426 312 44 26 chr4 91230939 91231278 -64398842 - L1MCa LINE L1 -5340 1788 1444 3 1281 419 319 149 16 chr4 91231357 91231551 -64398569 - L1MCa LINE L1 -5169 1254 1035 3 1281 372 43 0 0 chr4 91232137 91232183 -64397937 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1281 948 216 52 0 chr4 91232197 91232391 -64397729 - B3 SINE B2 -10 206 3 3 1281 470 17 17 0 chr4 91232664 91232723 -64397397 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1281 854 270 88 97 chr4 91234230 91234582 -64395538 - MTE2a LTR MaLR 0 379 31 3 1281 2398 312 33 17 chr4 91234586 91235484 -64394636 + Lx8 LINE L1 6413 7325 -148 3 1281 256 24 49 0 chr4 91235487 91235528 -64394592 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1281 267 318 43 81 chr4 91236016 91236201 -64393919 + ID_B1 SINE B4 47 224 0 3 1281 559 237 68 8 chr4 91236070 91236202 -64393918 + B1_Mur1 SINE Alu 10 149 0 3 1281 423 169 0 38 chr4 91236275 91236287 -64393833 + ID_B1 SINE B4 70 145 -78 3 1281 499 60 0 0 chr4 91236287 91236354 -64393766 + B1_Mus1 SINE Alu 1 67 -81 3 1281 37931 27 0 7 chr4 91237207 91243451 -64386669 - L1Md_T LINE L1 0 6582 440 3 1281 225 339 288 5 chr4 91243915 91244099 -64386021 + MIRc SINE MIR 2 237 -31 3 1281 994 89 7 14 chr4 91244515 91244663 -64385457 + URR1A DNA MER1_type 80 226 0 3 1281 456 245 48 72 chr4 91244663 91244676 -64385444 - CYRA11_Mm Unknown Y-chromosome -293 283 162 3 1281 1516 287 71 46 chr4 91245635 91246150 -64383970 + L1MA5 LINE L1 4179 4717 -1426 3 1281 486 0 0 0 chr4 91246150 91246204 -64383916 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1281 1100 71 0 0 chr4 91246205 91246345 -64383775 - B1_Mus1 SINE Alu -7 141 2 3 1281 1516 287 71 46 chr4 91246345 91246364 -64383756 + L1MA5 LINE L1 4718 4728 -1415 3 1281 2207 111 6 0 chr4 91246364 91246689 -64383431 - L1_Mus3 LINE L1 -1 6637 6311 3 1281 1516 287 71 46 chr4 91246689 91247168 -64382952 + L1MA5 LINE L1 4729 5218 -925 3 1281 662 244 32 13 chr4 91247212 91247366 -64382754 + RSINE1 SINE B4 3 159 -6 3 1281 68 0 0 0 chr4 91247389 91247457 -64382663 + AT_rich Low_complexity Low_complexity 1 68 0 3 1281 1006 266 61 93 chr4 91247483 91247983 -64382137 + L1MA5 LINE L1 5265 5777 -523 3 1281 354 23 0 0 chr4 91247983 91248026 -64382094 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1281 955 266 61 93 chr4 91248026 91248290 -64381830 + L1MA5 LINE L1 5778 6005 -295 3 1281 217 85 62 21 chr4 91248915 91248963 -64381157 + A-rich Low_complexity Low_complexity 4 53 0 3 1281 628 178 21 91 chr4 91249059 91249245 -64380875 - RMER10A LTR ERVL 0 442 270 3 1281 631 126 0 0 chr4 91249214 91249309 -64380811 - RMER10A LTR ERVL -347 95 1 3 1281 288 258 52 41 chr4 91249365 91249462 -64380658 - B1F SINE Alu -50 99 2 3 1281 228 35 0 0 chr4 91249593 91249622 -64380498 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1281 595 344 84 4 chr4 91250752 91250938 -64379182 - B4 SINE B4 -4 288 87 3 1281 528 16 0 0 chr4 91250938 91250999 -64379121 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1281 595 344 84 4 chr4 91250999 91251037 -64379083 - B4 SINE B4 -206 86 47 3 1281 297 320 0 0 chr4 91251584 91251684 -64378436 + Ricksha_c DNA MuDR 355 454 -1594 3 1281 514 75 25 0 chr4 91254015 91254095 -64376025 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 3 1281 441 0 0 0 chr4 91254131 91254180 -64375940 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1281 464 297 138 13 chr4 91254444 91254688 -64375432 + LTR80A LTR ERVL 1 294 -290 3 1281 371 333 115 28 chr4 91254898 91255151 -64374969 + LTR80A LTR ERVL 296 570 -13 3 1281 221 309 71 26 chr4 91255703 91255816 -64374304 + MIRb SINE MIR 36 153 -115 3 1281 1808 169 127 14 chr4 91257559 91257680 -64372440 + ORR1B1 LTR MaLR 1 121 -273 3 1281 414 0 0 0 chr4 91257680 91257726 -64372394 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1281 378 0 0 0 chr4 91257726 91257767 -64372353 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1281 1808 169 127 14 chr4 91257767 91257998 -64372122 + ORR1B1 LTR MaLR 122 393 -1 3 1281 699 311 75 39 chr4 91257998 91258333 -64371787 + ORR1E LTR MaLR 13 359 0 4 1281 617 25 13 0 chr4 91258540 91258619 -64371501 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 4 1281 304 270 180 14 chr4 91259359 91259498 -64370622 + HAL1-3A_ME LINE L1 2277 2438 -420 4 1281 214 247 178 0 chr4 91260060 91260133 -64369987 - MIRb SINE MIR -161 107 22 4 1281 3150 156 36 12 chr4 91260300 91260877 -64369243 - Lx2B LINE L1 0 7000 6410 4 1281 180 0 0 0 chr4 91261278 91261298 -64368822 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1281 313 359 62 19 chr4 91261328 91261490 -64368630 - MIRb SINE MIR -8 260 92 4 1281 238 220 0 0 chr4 91262015 91262065 -64368055 + T-rich Low_complexity Low_complexity 1 50 0 4 1281 874 265 38 129 chr4 91262430 91262825 -64367295 + ORR1E LTR MaLR 1 359 0 4 1281 234 279 35 11 chr4 91264638 91264725 -64365395 - MIR SINE MIR 0 262 174 4 1281 552 360 5 23 chr4 91264734 91264953 -64365167 - MIRb SINE MIR 0 268 54 4 1281 244 352 53 30 chr4 91264977 91265109 -64365011 - MIR SINE MIR -105 157 23 4 1281 277 216 0 22 chr4 91265148 91265238 -64364882 + CT-rich Low_complexity Low_complexity 1 88 0 4 1281 223 270 102 74 chr4 91265240 91265348 -64364772 - PB1D10 SINE Alu -6 111 1 4 1281 421 333 96 73 chr4 91265373 91265810 -64364310 + Tigger13a DNA MER2_type 54 500 -271 4 1281 3164 98 0 9 chr4 91265848 91266293 -64363827 - BGLII_A LTR ERVK -4 441 1 4 1281 501 282 80 9 chr4 91267040 91267250 -64362870 + MTD LTR MaLR 1 217 -204 4 1281 351 274 78 10 chr4 91267298 91267401 -64362719 + B1_Mur1 SINE Alu 35 144 -5 4 1281 427 350 101 3 chr4 91267434 91267761 -64362359 - MLT1F LTR MaLR -111 437 80 4 1281 279 323 52 0 chr4 91267920 91268016 -64362104 - PB1D10 SINE Alu -15 102 2 4 1281 230 268 76 118 chr4 91268082 91268226 -64361894 - MLT1F1 LTR MaLR 0 569 432 4 1281 1613 152 27 119 chr4 91268367 91268814 -64361306 - RMER17C LTR ERVK 0 410 5 4 1281 191 318 111 9 chr4 91268957 91269065 -64361055 + L2c LINE L2 3264 3382 -5 4 1281 2203 146 16 3 chr4 91269106 91269492 -64360628 - Lx2B LINE L1 -667 5210 4820 4 1281 3308 174 26 9 chr4 91269490 91269515 -64360605 + Lx2B LINE L1 5204 5228 -649 4 1281 360 0 0 0 chr4 91269515 91269555 -64360565 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1281 3500 190 60 11 chr4 91269555 91270888 -64359232 + Lx2B LINE L1 5229 6667 -341 4 1281 31981 77 4 12 chr4 91270892 91276049 -64354071 + L1Md_F3 LINE L1 238 5302 -581 4 1281 2329 51 0 13 chr4 91276049 91276348 -64353772 + L1Md_A LINE L1 6288 6582 0 4 1281 31981 54 1 14 chr4 91276348 91276643 -64353477 + L1Md_F3 LINE L1 5303 5586 -297 4 1281 8147 39 2 1 chr4 91276644 91277626 -64352494 + L1Md_F3 LINE L1 5588 6570 -14 4 1281 905 214 142 39 chr4 91277627 91277938 -64352182 + Lx3C LINE L1 6658 7007 -1 4 1281 183 42 0 0 chr4 91277945 91277969 -64352151 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1281 27 29 0 0 chr4 91278507 91278541 -64351579 + AT_rich Low_complexity Low_complexity 1 34 0 4 1281 24 0 0 0 chr4 91278652 91278676 -64351444 + AT_rich Low_complexity Low_complexity 1 24 0 4 1281 547 351 99 67 chr4 91278857 91279364 -64350756 - MLT1G3 LTR MaLR -8 587 61 4 1281 230 318 11 22 chr4 91279652 91279742 -64350378 - MLT1B LTR MaLR -17 578 490 4 1281 450 134 10 30 chr4 91279844 91279944 -64350176 - L1Md_F2 LINE L1 0 6582 6485 4 1281 282 353 38 147 chr4 91280929 91281275 -64348845 - ORR1E LTR MaLR -51 308 1 4 1281 696 316 90 54 chr4 91282329 91282683 -64347437 - MLT1B LTR MaLR 0 390 24 4 1281 401 283 181 72 chr4 91282723 91282824 -64347296 - L2a LINE L2 -160 3266 3173 4 1281 217 0 29 29 chr4 91282824 91282858 -64347262 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1281 401 283 181 72 chr4 91282858 91283049 -64347071 - L2a LINE L2 -254 3172 2942 4 1281 228 295 104 50 chr4 91283369 91283551 -64346569 + LTR73 LTR ERV1 44 235 -337 4 1281 219 328 16 0 chr4 91284782 91284843 -64345277 + MIRb SINE MIR 5 66 -202 4 1281 6930 77 20 3 chr4 91285385 91286681 -64343439 + L1_Mus1 LINE L1 5249 6567 0 4 1281 363 325 51 6 chr4 91287231 91287389 -64342731 + L1MA6 LINE L1 5040 5204 -939 4 1281 947 266 88 16 chr4 91287411 91287907 -64342213 + L1MA6 LINE L1 5255 5775 -525 4 1281 316 243 69 63 chr4 91287908 91288068 -64342052 - B3A SINE B2 -34 161 2 4 1281 761 285 79 6 chr4 91288069 91288422 -64341698 + L1MA6 LINE L1 5910 6288 -12 4 1281 216 0 0 0 chr4 91291972 91291996 -64338124 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 4 1281 360 0 0 0 chr4 91293112 91293152 -64336968 + (CTAA)n Simple_repeat Simple_repeat 3 42 0 4 1281 3408 30 2 0 chr4 91293152 91293545 -64336575 + MTA_Mm LTR MaLR 2 395 -1 4 1281 315 0 0 0 chr4 91293545 91293580 -64336540 + (CTAA)n Simple_repeat Simple_repeat 4 38 0 4 1281 24 0 0 0 chr4 91294821 91294845 -64335275 + AT_rich Low_complexity Low_complexity 1 24 0 4 1281 190 243 0 0 chr4 91296281 91296318 -64333802 + MER5B DNA MER1_type 19 55 -123 4 1281 522 0 0 0 chr4 91296939 91296997 -64333123 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1281 2637 242 69 38 chr4 91296999 91297858 -64332262 - Lx9 LINE L1 -188 7456 6572 4 1281 8144 21 0 0 chr4 91299058 91300728 -64329392 - L1Md_T LINE L1 0 6582 4913 4 1281 34974 40 1 36 chr4 91300724 91307383 -64322737 - L1Md_T LINE L1 0 6585 81 4 1281 391 286 26 9 chr4 91307463 91307576 -64322544 - PB1D10 SINE Alu -2 115 1 4 1281 274 319 75 33 chr4 91308160 91308308 -64321812 - B3A SINE B2 -3 213 65 4 1281 3694 151 68 0 chr4 91308315 91309006 -64321114 - L1_Mm LINE L1 -34 5849 5112 4 1281 5445 96 42 2 chr4 91309006 91309808 -64320312 + L1_Mus4 LINE L1 5803 6636 0 4 1281 297 0 0 0 chr4 91309879 91309912 -64320208 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 4 1281 639 0 0 0 chr4 91309912 91309982 -64320138 + (GAGAA)n Simple_repeat Simple_repeat 5 75 0 4 1281 276 176 0 0 chr4 91309992 91310043 -64320077 - B3A SINE B2 -143 55 5 4 1281 1896 272 12 21 chr4 91310441 91311016 -64319104 - Lx9 LINE L1 -128 7516 6947 4 1281 307 281 28 64 chr4 91311016 91311267 -64318853 - L1M2 LINE L1 -761 5382 5141 4 1281 480 236 141 33 chr4 91312878 91313062 -64317058 + Lx9 LINE L1 7134 7337 -307 4 1281 639 300 103 77 chr4 91313367 91313746 -64316374 + L4 LINE RTE 1532 1920 -109 4 1281 994 163 119 0 chr4 91314520 91314722 -64315398 + URR1A DNA MER1_type 1 226 0 4 1281 459 0 0 0 chr4 91315390 91315441 -64314679 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1281 1055 241 125 23 chr4 91315461 91315805 -64314315 + MTEb LTR MaLR 1 379 0 4 1281 261 0 0 0 chr4 91316030 91316059 -64314061 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1281 354 361 85 21 chr4 91317012 91317247 -64312873 - Kanga1c DNA Tc2 -6 723 474 4 1281 42 20 0 0 chr4 91317262 91317311 -64312809 + AT_rich Low_complexity Low_complexity 1 49 0 4 1281 935 321 30 0 chr4 91317450 91317749 -64312371 - Kanga1c DNA Tc2 -259 470 163 4 1281 441 0 0 0 chr4 91317897 91317946 -64312174 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 1281 4300 94 46 3 chr4 91318200 91318831 -64311289 - L1_Mus4 LINE L1 -15 6621 5964 4 1281 2633 41 0 0 chr4 91318831 91319151 -64310969 - IAPEY2_LTR LTR ERVK -6 351 32 4 1281 1256 84 0 0 chr4 91319155 91319334 -64310786 - L1_Mus4 LINE L1 -655 5981 5803 4 1281 3944 143 18 6 chr4 91319330 91320000 -64310120 + L1_Mus4 LINE L1 5108 5785 -98 4 1281 227 292 15 0 chr4 91320860 91320925 -64309195 - MIRc SINE MIR -135 133 68 4 1281 33765 36 1 0 chr4 91321308 91327412 -64302708 + L1Md_T LINE L1 1 5589 -297 4 1281 9032 5 0 0 chr4 91327412 91328408 -64301712 + L1Md_T LINE L1 5590 6585 0 4 1281 228 220 0 39 chr4 91329513 91329565 -64300555 + (TATG)n Simple_repeat Simple_repeat 3 52 0 4 1281 477 110 0 0 chr4 91330199 91330272 -64299848 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1281 1100 82 7 0 chr4 91333680 91333826 -64296294 + B1_Mus2 SINE Alu 1 147 0 4 1281 2356 209 50 64 chr4 91334868 91335093 -64295027 + Lx5 LINE L1 6497 6715 -335 4 1281 3039 73 2 5 chr4 91335093 91335490 -64294630 - MTA_Mm LTR MaLR 0 396 1 4 1281 2356 209 50 64 chr4 91335490 91335513 -64294607 + Lx5 LINE L1 6716 6731 -319 4 1281 360 43 0 0 chr4 91335513 91335559 -64294561 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1281 2356 209 50 64 chr4 91335559 91335871 -64294249 + Lx5 LINE L1 6732 7050 0 4 1281 360 219 79 0 chr4 91335950 91336064 -64294056 + L1M3e LINE L1 39 161 -6869 4 1281 308 315 69 8 chr4 91336488 91336619 -64293501 + Lx8 LINE L1 6862 7000 -473 4 1281 7405 90 12 10 chr4 91336620 91338350 -64291770 + L1_Mus1 LINE L1 4832 6567 0 4 1281 432 0 0 0 chr4 91338558 91338606 -64291514 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1281 270 288 94 45 chr4 91339014 91339258 -64290862 + L1M3e LINE L1 2044 2299 -4738 4 1281 514 225 116 0 chr4 91339366 91339495 -64290625 - L1M2 LINE L1 -568 5723 5580 4 1281 198 0 0 0 chr4 91340171 91340193 -64289927 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1281 274 227 78 26 chr4 91340623 91340700 -64289420 + RLTR25A LTR ERVK 507 587 -516 4 1281 780 79 0 0 chr4 91340633 91340734 -64289386 + B1_Mm SINE Alu 47 147 0 4 1281 282 56 0 0 chr4 91340734 91340770 -64289350 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1281 195 184 0 0 chr4 91342755 91342793 -64287327 + (CAT)n Simple_repeat Simple_repeat 3 40 0 4 1281 367 349 94 22 chr4 91343287 91343562 -64286558 - L1ME3A LINE L1 -226 5947 5653 4 1281 226 246 142 8 chr4 91343603 91343730 -64286390 - L1MC LINE L1 -907 5239 5096 4 1281 899 63 8 45 chr4 91344734 91344866 -64285254 + B1_Mus1 SINE Alu 22 148 0 4 1281 257 253 48 107 chr4 91344972 91345056 -64285064 - ID4_ SINE ID -3 80 2 4 1281 21 36 0 0 chr4 91345616 91345644 -64284476 + AT_rich Low_complexity Low_complexity 1 28 0 4 1281 631 344 0 13 chr4 91346146 91346305 -64283815 + RSINE1 SINE B4 8 164 -1 4 1281 414 0 0 0 chr4 91346317 91346363 -64283757 + (CTAA)n Simple_repeat Simple_repeat 2 47 0 4 1281 225 108 0 0 chr4 91346884 91346921 -64283199 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1281 22 35 0 0 chr4 91348878 91348907 -64281213 + AT_rich Low_complexity Low_complexity 1 29 0 4 1281 1089 55 0 46 chr4 91349066 91349202 -64280918 - B1_Mm SINE Alu 0 147 18 4 1281 2000 173 160 3 chr4 91349202 91349590 -64280530 - RLTR44B LTR ERVK 0 449 1 4 1281 1089 55 0 46 chr4 91349590 91349606 -64280514 - B1_Mm SINE Alu -130 17 2 4 1281 801 243 51 43 chr4 91349680 91349934 -64280186 + Lx5 LINE L1 6227 6482 -991 5 1281 4871 237 68 21 chr4 91349933 91351686 -64278434 + Lx5 LINE L1 5985 7414 -59 5 1281 297 0 0 0 chr4 91351686 91351719 -64278401 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 160 21043 167 16 38 chr4 91351876 91358260 -64271860 + Lx LINE L1 430 6654 0 5 1282 289 232 11 11 chr4 91358312 91358372 -64271748 + B1F SINE Alu 42 104 -13 5 1282 513 0 0 0 chr4 91358372 91358429 -64271691 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1282 432 0 0 0 chr4 91358429 91358476 -64271644 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1282 232 239 82 82 chr4 91358476 91358487 -64271633 + PB1D10 SINE Alu 105 113 -4 5 1282 207 88 0 0 chr4 91358759 91358793 -64271327 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 5 1282 351 0 0 0 chr4 91358806 91358845 -64271275 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 1282 840 331 65 15 chr4 91359021 91359346 -64270774 + MLT1A0 LTR MaLR 6 346 -19 5 1282 201 39 0 0 chr4 91359711 91359737 -64270383 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1282 808 40 0 0 chr4 91359737 91359838 -64270282 - B1_Mm SINE Alu -9 138 38 5 1282 308 88 103 17 chr4 91359786 91359844 -64270276 - 4.5SRNA scRNA scRNA -8 86 24 5 1282 210 184 20 0 chr4 91360293 91360342 -64269778 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 1282 186 43 0 0 chr4 91360342 91360365 -64269755 + (CCA)n Simple_repeat Simple_repeat 3 25 0 5 1282 181 338 235 0 chr4 91361389 91361525 -64268595 + L2 LINE L2 2792 2959 -460 5 1282 266 113 93 19 chr4 91361612 91361666 -64268454 + Lx7 LINE L1 7631 7688 -8 5 1282 567 254 33 55 chr4 91361802 91361985 -64268135 - B3A SINE B2 -16 182 4 5 1282 29 0 0 0 chr4 91362242 91362271 -64267849 + AT_rich Low_complexity Low_complexity 1 29 0 5 1282 731 95 3 0 chr4 91362335 91362452 -64267668 + Lx2 LINE L1 5679 5797 -1200 5 1282 14538 78 1 8 chr4 91362453 91365175 -64264945 + L1Md_F2 LINE L1 424 3224 -2662 5 1282 5369 59 1 0 chr4 91365172 91365851 -64264269 + L1Md_F2 LINE L1 4910 5589 -297 5 1282 7856 55 2 4 chr4 91365851 91366849 -64263271 + L1Md_F2 LINE L1 5590 6585 0 5 1282 7220 138 30 1 chr4 91366855 91368030 -64262090 + Lx2 LINE L1 5788 6996 -1 5 1282 1179 234 121 21 chr4 91368238 91368582 -64261538 + RLTR20C LTR ERVK 65 432 -102 5 1282 348 43 0 0 chr4 91368582 91368628 -64261492 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1282 1179 234 121 21 chr4 91368628 91368663 -64261457 + RLTR20C LTR ERVK 433 481 -53 5 1282 308 111 0 16 chr4 91368796 91368860 -64261260 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 5 1282 445 264 104 0 chr4 91371283 91371389 -64258731 - B3 SINE B2 -2 214 98 5 1282 249 217 0 0 chr4 91371397 91371443 -64258677 - B2_Mm2 SINE B2 -143 52 7 5 1282 222 237 12 73 chr4 91371562 91371644 -64258476 + L2b LINE L2 3299 3375 0 5 1282 183 80 0 0 chr4 91372289 91372314 -64257806 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1282 594 39 0 0 chr4 91372314 91372390 -64257730 + (GA)n Simple_repeat Simple_repeat 1 77 0 5 1282 843 95 0 63 chr4 91373844 91374035 -64256085 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1282 595 318 19 19 chr4 91374527 91374732 -64255388 + B3 SINE B2 2 206 -10 5 1282 185 267 117 26 chr4 91376252 91376329 -64253791 - L2 LINE L2 -819 2600 2517 5 1282 1470 39 0 0 chr4 91378117 91378329 -64251791 + (TTCCC)n Simple_repeat Simple_repeat 1 212 0 5 1282 479 273 273 0 chr4 91381390 91381555 -64248565 + ID_B1 SINE B4 2 211 -13 5 1282 189 315 119 20 chr4 91381692 91381848 -64248272 + MIRb SINE MIR 85 259 -9 5 1282 519 284 102 31 chr4 91382826 91383022 -64247098 - B3 SINE B2 -6 210 1 5 1282 25 75 0 0 chr4 91384151 91384204 -64245916 + AT_rich Low_complexity Low_complexity 1 53 0 5 1282 631 71 0 0 chr4 91385983 91386068 -64244052 - B1_Mus2 SINE Alu 0 147 63 5 1282 23 33 0 0 chr4 91386722 91386752 -64243368 + AT_rich Low_complexity Low_complexity 1 30 0 5 1282 308 203 16 0 chr4 91387760 91387824 -64242296 + L1_Mur3 LINE L1 5352 5416 -464 5 1282 691 170 0 20 chr4 91387826 91387976 -64242144 + CT-rich Low_complexity Low_complexity 2 148 0 5 1282 973 136 0 0 chr4 91387978 91388118 -64242002 - B1_Mus1 SINE Alu -8 140 1 5 1282 1192 246 148 24 chr4 91388118 91388613 -64241507 + Lx8 LINE L1 5377 5951 -1522 5 1282 476 290 67 32 chr4 91389342 91389649 -64240471 - L1M2 LINE L1 -650 5662 5351 5 1282 1208 259 92 30 chr4 91389711 91390328 -64239792 - L1MC LINE L1 -585 5748 5110 5 1282 402 325 98 0 chr4 91392226 91392349 -64237771 + RSINE1 SINE B4 7 141 -24 5 1282 27 81 0 0 chr4 91392372 91392434 -64237686 + AT_rich Low_complexity Low_complexity 1 62 0 5 1282 610 340 92 60 chr4 91392506 91392909 -64237211 + MLT1D LTR MaLR 3 418 -87 5 1282 1779 355 34 11 chr4 91394040 91394925 -64235195 - Lx8 LINE L1 -185 7288 6384 5 1282 542 191 66 7 chr4 91394924 91395061 -64235059 + L1_Mur3 LINE L1 3850 3994 -1886 5 1282 639 238 80 18 chr4 91395075 91395238 -64234882 + ORR1D1 LTR MaLR 8 180 -194 5 1282 320 73 71 24 chr4 91395262 91395346 -64234774 + (TCTG)n Simple_repeat Simple_repeat 2 89 0 5 1282 428 240 10 10 chr4 91395349 91395450 -64234670 + ORR1D1 LTR MaLR 164 264 -110 5 1282 3067 201 9 15 chr4 91395450 91396135 -64233985 - L1_Mur3 LINE L1 -1456 4424 3744 5 1282 901 245 47 45 chr4 91396169 91396846 -64233274 - L1_Mur3 LINE L1 -4301 1579 886 5 1282 471 63 0 0 chr4 91397020 91397083 -64233037 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 5 1282 339 219 14 0 chr4 91397123 91397196 -64232924 + Lx6 LINE L1 6941 7014 -446 5 1282 751 291 121 18 chr4 91398177 91398443 -64231677 + Lx6 LINE L1 7005 7516 -180 5 1282 25 0 0 0 chr4 91398479 91398504 -64231616 + AT_rich Low_complexity Low_complexity 1 25 0 5 1282 1754 236 45 66 chr4 91398533 91399412 -64230708 - Lx6 LINE L1 -176 7284 6462 5 1282 304 299 0 0 chr4 91399412 91399479 -64230641 + URR1B DNA MER1_type 1 67 -158 5 1282 239 276 41 0 chr4 91400026 91400124 -64229996 - L1ME3 LINE L1 -174 6161 6060 5 1282 209 33 33 0 chr4 91400143 91400173 -64229947 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1282 395 394 70 63 chr4 91400207 91400494 -64229626 - B4A SINE B4 0 292 4 5 1282 2095 118 3 12 chr4 91400505 91400832 -64229288 - L1_Mm LINE L1 -573 5310 4987 5 1282 13505 122 1 77 chr4 91400830 91405029 -64225091 - L1Md_F2 LINE L1 -12 6570 3029 5 1282 7272 79 7 0 chr4 91405032 91405983 -64224137 + L1_Mus2 LINE L1 5608 6565 -1 5 1282 306 364 43 6 chr4 91406045 91406208 -64223912 - L1ME3 LINE L1 -457 5956 5788 5 1282 523 107 0 37 chr4 91406428 91406535 -64223585 - L1_Mus3 LINE L1 0 6638 6536 5 1282 1160 350 42 33 chr4 91406671 91406905 -64223215 - Lx8 LINE L1 -688 6785 6550 5 1282 536 262 7 47 chr4 91406905 91407053 -64223067 - B1_Mur1 SINE Alu -3 146 5 5 1282 1160 350 42 33 chr4 91407053 91407362 -64222758 - Lx8 LINE L1 -924 6549 6237 5 1282 333 317 116 6 chr4 91407472 91407653 -64222467 - L1ME3 LINE L1 -1048 5271 5071 5 1282 1830 204 9 9 chr4 91407999 91408345 -64221775 + RLTR15 LTR ERVK 14 359 0 5 1282 250 252 51 25 chr4 91408592 91408710 -64221410 - L1ME3 LINE L1 -5552 848 728 5 1282 704 289 131 27 chr4 91408721 91409383 -64220737 - L1M3 LINE L1 -995 5145 4415 5 1282 2290 186 31 45 chr4 91409457 91409968 -64220152 - Lx2B LINE L1 0 7000 6497 5 1282 353 302 97 20 chr4 91409983 91410251 -64219869 - L1M3 LINE L1 -2694 3449 3153 5 1282 234 0 0 0 chr4 91410251 91410277 -64219843 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1282 353 302 97 20 chr4 91410277 91410461 -64219659 - L1M3 LINE L1 -2991 3152 2962 5 1282 504 290 46 15 chr4 91411103 91411299 -64218821 - L1MB3 LINE L1 -31 6152 5951 5 1282 340 316 80 14 chr4 91412049 91412187 -64217933 + L1M2 LINE L1 2860 3006 -3137 5 1282 13723 141 114 17 chr4 91412189 91412926 -64217194 + L1_Mur1 LINE L1 209 1244 -5740 5 1282 1048 75 8 0 chr4 91412926 91413060 -64217060 + B1_Mm SINE Alu 2 136 -11 5 1282 272 27 0 26 chr4 91413060 91413098 -64217022 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 1282 13723 88 21 30 chr4 91413098 91413230 -64216890 + L1_Mur1 LINE L1 1245 1374 -4512 5 1282 7542 29 8 4 chr4 91413230 91414141 -64215979 + L1Md_F3 LINE L1 5669 6582 -2 5 1282 13723 88 21 30 chr4 91414141 91416127 -64213993 + L1_Mur1 LINE L1 1375 3351 -2535 5 1282 2258 310 70 27 chr4 91416201 91417251 -64212869 - Lx8 LINE L1 -200 7273 6178 5 1282 426 138 4 0 chr4 91417263 91417342 -64212778 - L1_Mur1 LINE L1 -578 5546 5466 5 1282 21 57 0 0 chr4 91417832 91417867 -64212253 + AT_rich Low_complexity Low_complexity 1 35 0 5 1282 231 357 40 0 chr4 91418742 91418848 -64211272 + MIR SINE MIR 64 179 -89 5 1282 237 260 68 0 chr4 91419075 91419148 -64210972 - LTR79 LTR ERVL -77 450 373 5 1282 189 74 0 0 chr4 91419982 91420009 -64210111 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1282 194 193 18 0 chr4 91420056 91420113 -64210007 + CT-rich Low_complexity Low_complexity 2 59 0 5 1282 2807 40 20 6 chr4 91421313 91421661 -64208459 + IAPEY2_LTR LTR ERVK 1 353 -4 5 1282 9369 129 11 20 chr4 91421661 91423293 -64206827 + IAPEY3-int LTR ERVK 16 1982 -5698 5 1282 3512 69 9 0 chr4 91423270 91423718 -64206402 + IAPEY3-int LTR ERVK 2238 2689 -4991 5 1282 224 360 44 0 chr4 91423733 91423847 -64206273 + L3b LINE CR1 335 453 -29 5 1282 2970 120 14 31 chr4 91423847 91424504 -64205616 + IAPEY3-int LTR ERVK 6984 7581 0 5 1282 2509 38 9 0 chr4 91424515 91424834 -64205286 + IAPEY2_LTR LTR ERVK 33 354 -3 5 1282 22 35 0 0 chr4 91424969 91424998 -64205122 + AT_rich Low_complexity Low_complexity 1 29 0 5 1282 332 300 11 11 chr4 91425172 91425263 -64204857 - PB1D10 SINE Alu -22 95 5 5 1282 481 329 67 62 chr4 91425295 91425633 -64204487 - L1ME3 LINE L1 -197 5965 5627 5 1282 2294 152 293 4 chr4 91425633 91426107 -64204013 - RMER19C LTR ERVK 0 611 1 5 1282 336 336 83 66 chr4 91426107 91426247 -64203873 - L1ME3 LINE L1 -553 5626 5480 5 1282 270 160 0 0 chr4 91426270 91426320 -64203800 + CT-rich Low_complexity Low_complexity 3 52 0 5 1282 207 0 0 0 chr4 91426327 91426350 -64203770 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 5 1282 1206 7 0 0 chr4 91426368 91426503 -64203617 + L1_Mm LINE L1 5714 5848 -35 5 1282 1073 286 52 30 chr4 91426526 91426656 -64203464 - MTE2b LTR MaLR -44 335 193 5 1282 2580 163 31 11 chr4 91426656 91427108 -64203012 - RMER6B LTR ERVK 0 461 1 5 1282 1073 286 52 30 chr4 91427108 91427305 -64202815 - MTE2b LTR MaLR -187 192 1 5 1282 200 34 0 33 chr4 91427550 91427580 -64202540 + (TCC)n Simple_repeat Simple_repeat 3 31 0 5 1282 351 257 129 0 chr4 91427591 91427731 -64202389 - L1ME3 LINE L1 -2458 3688 3531 5 1282 468 322 22 43 chr4 91428782 91428967 -64201153 - B3A SINE B2 -16 182 2 5 1282 265 336 76 44 chr4 91429068 91429410 -64200710 - L1M2 LINE L1 -4348 2501 2149 5 1282 610 284 50 0 chr4 91429426 91429627 -64200493 - B3 SINE B2 -5 211 1 5 1282 529 34 0 116 chr4 91429801 91429999 -64200121 + CT-rich Low_complexity Low_complexity 6 180 0 5 1282 1078 82 0 39 chr4 91430009 91430162 -64199958 - B1_Mus2 SINE Alu 0 147 1 5 1282 945 0 0 0 chr4 91430163 91430268 -64199852 + (TTC)n Simple_repeat Simple_repeat 1 105 0 6 1282 2628 58 0 9 chr4 91430902 91431247 -64198873 + L1_Mus1 LINE L1 6213 6554 -13 6 1282 24 0 0 0 chr4 91431248 91431272 -64198848 + AT_rich Low_complexity Low_complexity 1 24 0 6 1282 23 33 0 0 chr4 91432127 91432157 -64197963 + AT_rich Low_complexity Low_complexity 1 30 0 6 1282 534 128 0 0 chr4 91432268 91432362 -64197758 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 1282 791 334 40 38 chr4 91432390 91432816 -64197304 - Lx9 LINE L1 -226 7418 6992 6 1282 301 323 111 58 chr4 91432890 91433061 -64197059 - B3A SINE B2 -18 180 1 6 1282 547 323 81 29 chr4 91433241 91433588 -64196532 - L1MEe LINE L1 -3830 1024 660 6 1282 425 194 29 0 chr4 91434201 91434304 -64195816 + L1MB4 LINE L1 6074 6179 -1 6 1282 28 0 0 0 chr4 91434540 91434568 -64195552 + AT_rich Low_complexity Low_complexity 1 28 0 6 1282 263 392 0 40 chr4 91434844 91434945 -64195175 + RSINE1 SINE B4 67 163 -2 6 1282 387 0 0 0 chr4 91434965 91435008 -64195112 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1282 610 293 114 9 chr4 91435018 91435245 -64194875 + MER2 DNA MER2_type 89 339 -6 6 1282 574 273 76 48 chr4 91435256 91435610 -64194510 + L1MCa LINE L1 2058 2421 -4087 6 1282 7472 77 6 1 chr4 91435967 91436956 -64193164 - L1_Mus3 LINE L1 -2 6636 5643 6 1282 349 250 15 0 chr4 91437144 91437212 -64192908 - B1_Mur4 SINE Alu -80 70 2 6 1282 795 249 84 3 chr4 91437213 91437548 -64192572 - L1M2 LINE L1 -754 5389 5028 6 1282 10259 68 1 4 chr4 91437759 91439803 -64190317 - L1Md_F2 LINE L1 -13 6569 4532 6 1282 18861 64 14 2 chr4 91439799 91442335 -64187785 + L1Md_F2 LINE L1 1974 4539 -1344 6 1282 306 306 49 8 chr4 91442335 91442457 -64187663 - L1M2 LINE L1 -1311 4832 4706 6 1282 611 349 59 10 chr4 91442494 91442798 -64187322 - L1MCa LINE L1 -6187 321 3 6 1282 1644 311 33 20 chr4 91443257 91443857 -64186263 - Lx8 LINE L1 -27 7446 6839 6 1282 437 314 76 0 chr4 91443989 91444107 -64186013 + RSINE1 SINE B4 3 129 -36 6 1282 441 0 0 0 chr4 91444125 91444174 -64185946 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1282 24 53 0 0 chr4 91444291 91444329 -64185791 + AT_rich Low_complexity Low_complexity 1 38 0 6 1282 3963 82 2 0 chr4 91444560 91445130 -64184990 + MusHAL1 LINE L1 1698 2268 -444 6 1282 4359 113 21 0 chr4 91445130 91445757 -64184363 - Lx2A LINE L1 -108 6900 6261 6 1282 461 32 16 0 chr4 91446579 91446642 -64183478 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1282 1861 221 24 21 chr4 91446847 91447222 -64182898 + MTC LTR MaLR 1 376 -45 6 1282 260 30 0 0 chr4 91447466 91447499 -64182621 + ORR1A2 LTR MaLR 5 37 -290 6 1282 977 86 58 0 chr4 91447499 91447638 -64182482 + ORR1A2 LTR MaLR 173 319 -8 6 1282 481 303 11 69 chr4 91448746 91448934 -64181186 - B3A SINE B2 -16 182 6 6 1282 305 348 16 21 chr4 91449206 91449394 -64180726 - Lx9 LINE L1 -223 7421 7235 6 1282 41084 6 0 0 chr4 91449388 91455733 -64174387 - L1Md_A LINE L1 0 6582 237 6 1282 2295 279 49 30 chr4 91455734 91456505 -64173615 - Lx9 LINE L1 -391 7253 6468 6 1282 492 59 0 0 chr4 91456747 91456815 -64173305 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1282 881 156 81 6 chr4 91457098 91457259 -64172861 + MER5B DNA MER1_type 2 174 -4 6 1282 37 39 0 0 chr4 91459307 91459358 -64170762 + AT_rich Low_complexity Low_complexity 1 51 0 6 1282 273 57 0 0 chr4 91459379 91459414 -64170706 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 6 1282 6835 156 25 1 chr4 91459986 91461156 -64168964 + Lx2 LINE L1 5799 6996 -1 6 1282 227 358 18 45 chr4 91461707 91461818 -64168302 + MLT1G3 LTR MaLR 488 595 0 6 1282 34 24 0 0 chr4 91462257 91462298 -64167822 + AT_rich Low_complexity Low_complexity 1 41 0 6 1282 1871 116 57 10 chr4 91462609 91462923 -64167197 + Lx3A LINE L1 6653 6981 0 6 1282 22 0 0 0 chr4 91462927 91462949 -64167171 + AT_rich Low_complexity Low_complexity 1 22 0 6 1282 738 218 83 22 chr4 91463314 91463544 -64166576 - Lx7 LINE L1 0 7696 7453 6 1282 979 139 0 6 chr4 91463611 91463770 -64166350 + L1_Mur2 LINE L1 3593 3750 -2127 6 1282 864 111 0 0 chr4 91463772 91463898 -64166222 - Lx2 LINE L1 -1206 5791 5666 6 1282 2651 194 39 17 chr4 91463898 91464438 -64165682 + Lx LINE L1 6094 6645 -9 6 1282 561 167 0 0 chr4 91464441 91464537 -64165583 + L1_Mur2 LINE L1 3745 3840 -2037 6 1282 3394 208 84 4 chr4 91464534 91465245 -64164875 + Lx5 LINE L1 6280 7047 -3 6 1282 225 83 0 0 chr4 91465335 91465371 -64164749 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 1282 8402 30 0 1 chr4 91465384 91466679 -64163441 - L1Md_A LINE L1 -1 6581 5288 6 1282 39407 21 1 0 chr4 91466673 91472015 -64158105 - L1Md_A LINE L1 -1 6581 1236 6 1282 6080 43 14 52 chr4 91473277 91474115 -64156005 - L1Md_A LINE L1 -5474 1250 445 6 1282 3605 251 33 3 chr4 91474150 91475000 -64155120 - Lx7 LINE L1 -399 7297 6423 6 1282 1241 89 0 0 chr4 91476517 91476679 -64153441 - L1_Mus3 LINE L1 -96 6470 6309 6 1282 680 110 23 8 chr4 91476679 91476807 -64153313 + L1_Mus3 LINE L1 6502 6631 -7 6 1282 1269 135 0 5 chr4 91476996 91477212 -64152908 + L1_Mus4 LINE L1 6422 6636 0 6 1282 315 365 81 63 chr4 91477489 91478047 -64152073 + L2 LINE L2 2285 2852 -567 6 1282 1115 209 27 0 chr4 91478546 91478766 -64151354 - URR1A DNA MER1_type 0 226 1 6 1282 360 274 106 0 chr4 91479467 91479580 -64150540 - Lx8 LINE L1 -360 7113 6989 6 1282 377 306 158 56 chr4 91480750 91481072 -64149048 - MLT1A0 LTR MaLR -10 355 1 6 1282 7555 139 9 13 chr4 91481274 91483149 -64146971 + L1VL4 LINE L1 204 2070 -1489 6 1282 13636 131 6 7 chr4 91483147 91486173 -64143947 + L1_Mus4 LINE L1 3614 6633 -3 6 1282 1130 253 27 57 chr4 91486583 91486773 -64143347 + L1_Mur3 LINE L1 1890 2070 -3810 6 1282 456 19 0 0 chr4 91486773 91486826 -64143294 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1282 477 0 0 0 chr4 91486826 91486878 -64143242 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1282 1130 253 27 57 chr4 91486878 91487028 -64143092 + L1_Mur3 LINE L1 2071 2217 -3663 6 1282 450 0 0 0 chr4 91487028 91487078 -64143042 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1282 360 0 0 0 chr4 91487078 91487117 -64143003 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1282 1130 253 27 57 chr4 91487117 91487179 -64142941 + L1_Mur3 LINE L1 2218 2280 -3600 6 160 4989 205 30 10 chr4 91487157 91488350 -64141770 + L1_Mur3 LINE L1 3049 4265 -1615 6 1283 1699 269 51 5 chr4 91488347 91488796 -64141324 + Lx6 LINE L1 6989 7458 -2 6 1283 556 82 41 0 chr4 91488798 91488896 -64141224 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 6 1283 551 102 11 0 chr4 91489933 91490021 -64140099 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 6 1283 234 0 0 0 chr4 91490056 91490082 -64140038 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1283 1327 124 203 8 chr4 91490315 91490576 -64139544 + Lx LINE L1 6342 6653 -1 6 1283 21 36 0 0 chr4 91491025 91491053 -64139067 + AT_rich Low_complexity Low_complexity 1 28 0 6 1283 264 325 53 0 chr4 91492045 91492159 -64137961 - MER5A1 DNA MER1_type -19 147 28 6 1283 219 336 33 27 chr4 91493530 91493680 -64136440 - L2b LINE L2 -229 3146 2996 6 1283 1620 243 47 18 chr4 91494101 91494483 -64135637 - MTD LTR MaLR -8 411 19 6 1283 786 306 38 13 chr4 91497260 91497499 -64132621 + B4A SINE B4 1 248 -44 6 1283 1303 221 40 102 chr4 91497499 91497871 -64132249 + MTD LTR MaLR 1 349 -70 6 1283 237 182 23 0 chr4 91497919 91497963 -64132157 + MTD LTR MaLR 362 406 -13 6 1283 306 73 0 0 chr4 91498013 91498054 -64132066 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1283 302 156 0 25 chr4 91498631 91498710 -64131410 + GA-rich Low_complexity Low_complexity 3 79 0 6 1283 4763 114 0 22 chr4 91498922 91499998 -64130122 + L1Md_F LINE L1 877 1895 -2019 6 1283 21273 128 7 3 chr4 91500001 91503394 -64126726 + L1_Mm LINE L1 1899 5304 -579 1 1283 36997 30 3 59 chr4 91503392 91508456 -64121664 + L1_Mus2 LINE L1 561 5586 -297 2 1283 8316 38 0 0 chr4 91508456 91509450 -64120670 + L1Md_T LINE L1 5587 6580 -2 3 1283 36997 59 8 29 chr4 91509450 91510711 -64119409 + L1_Mus2 LINE L1 5587 6566 0 2 1283 201 94 0 0 chr4 91510880 91510912 -64119208 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1283 8896 178 107 12 chr4 91511285 91513390 -64116730 - L1_Mur2 LINE L1 -1981 3896 1592 5 1283 350 328 72 53 chr4 91513396 91513726 -64116394 + Lx8 LINE L1 7176 7473 0 6 1283 737 178 71 49 chr4 91514108 91514291 -64115829 - Lx5 LINE L1 -4 7046 6860 7 1283 2157 212 68 19 chr4 91514356 91514841 -64115279 + Lx4B LINE L1 6152 6660 -398 8 1283 765 248 50 10 chr4 91516381 91516581 -64113539 + B3 SINE B2 5 212 -4 9 1283 597 255 0 20 chr4 91516705 91516853 -64113267 + B1_Mur4 SINE Alu 1 145 -5 1 1283 33 43 0 0 chr4 91516930 91516977 -64113143 + AT_rich Low_complexity Low_complexity 1 47 0 1 1283 416 300 47 54 chr4 91517084 91517100 -64113020 - B1_Mus2 SINE Alu 0 147 135 1 1283 207 0 0 0 chr4 91517100 91517123 -64112997 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1283 536 272 54 1 chr4 91517123 91517254 -64112866 - B1_Mur1 SINE Alu -13 136 1 1 1283 204 40 0 0 chr4 91518153 91518178 -64111942 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1283 278 115 0 19 chr4 91519526 91519579 -64110541 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 1283 932 340 55 13 chr4 91519779 91520235 -64109885 + RMER5 LTR ERV1 49 523 -11 1 1283 1034 298 33 15 chr4 91520239 91520693 -64109427 - L1MC LINE L1 -2169 3977 3516 1 1283 1091 292 59 53 chr4 91520781 91521272 -64108848 - Lx8 LINE L1 -1 7472 6979 1 1283 1061 265 85 113 chr4 91521388 91522221 -64107899 - L1MC LINE L1 -2802 3344 2535 1 1283 565 158 8 8 chr4 91522698 91522819 -64107301 + (TG)n Simple_repeat Simple_repeat 1 121 0 1 1283 608 269 64 5 chr4 91523337 91523539 -64106581 - B3 SINE B2 0 216 3 2 1283 195 114 0 0 chr4 91523663 91523698 -64106422 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 2 1283 441 0 0 0 chr4 91523700 91523749 -64106371 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1283 321 89 0 0 chr4 91524518 91524563 -64105557 + (CAAAG)n Simple_repeat Simple_repeat 2 46 0 2 1283 246 152 0 0 chr4 91524808 91524867 -64105253 + T-rich Low_complexity Low_complexity 1 59 0 2 1283 1182 48 0 14 chr4 91524867 91525015 -64105105 - B1_Mus2 SINE Alu 0 147 2 2 1283 274 330 8 99 chr4 91525017 91525138 -64104982 + MER20 DNA MER1_type 20 129 -90 2 1283 2188 12 0 0 chr4 91526139 91526388 -64103732 + L1Md_A LINE L1 6334 6582 0 2 1283 209 54 0 75 chr4 91527802 91527842 -64102278 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1283 381 86 0 0 chr4 91530441 91530499 -64099621 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1283 792 69 0 0 chr4 91531354 91531470 -64098650 + (TG)n Simple_repeat Simple_repeat 1 116 0 3 1283 7428 95 7 7 chr4 91533029 91534127 -64095993 - L1_Mus3 LINE L1 -7 6631 5535 3 1283 1352 326 36 9 chr4 91534129 91534578 -64095542 - MT2A LTR ERVL 0 533 73 3 1283 353 347 45 28 chr4 91534481 91534659 -64095461 - MTD LTR MaLR -219 200 20 3 1283 204 125 0 0 chr4 91534721 91534753 -64095367 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1283 28 48 0 0 chr4 91534849 91534891 -64095229 + AT_rich Low_complexity Low_complexity 1 42 0 3 1283 186 327 55 55 chr4 91535437 91535602 -64094518 - L2a LINE L2 -46 3380 3216 3 1283 345 62 0 0 chr4 91535715 91535763 -64094357 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1283 189 214 0 0 chr4 91535926 91535968 -64094152 + (CATA)n Simple_repeat Simple_repeat 1 42 0 3 1283 345 163 74 37 chr4 91535968 91536076 -64094044 + HAL1-2a_MD LINE L1 2398 2509 -515 3 1283 426 237 119 0 chr4 91536076 91536194 -64093926 + L1_Mur2 LINE L1 593 724 -6362 4 1283 6607 123 35 18 chr4 91536192 91537349 -64092771 + L1_Mur2 LINE L1 3034 4209 -1668 4 1283 4364 141 47 4 chr4 91537349 91538070 -64092050 + Lx4A LINE L1 6300 7051 -7 4 1283 234 91 0 0 chr4 91538070 91538103 -64092017 + (ATG)n Simple_repeat Simple_repeat 1 33 0 4 1283 2965 251 73 14 chr4 91538767 91539497 -64090623 + Lx6 LINE L1 6670 7442 -18 4 1283 507 60 0 0 chr4 91539509 91539576 -64090544 + (TTTTA)n Simple_repeat Simple_repeat 3 69 0 4 1283 468 0 0 0 chr4 91539702 91539754 -64090366 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1283 483 154 0 0 chr4 91539759 91539837 -64090283 - Lx4A LINE L1 -892 6166 6089 4 1283 19914 160 29 54 chr4 91539838 91541045 -64089075 - Lx4A LINE L1 -521 5356 4200 4 1283 3792 139 95 104 chr4 91541045 91541959 -64088161 - RMER17A2 LTR ERVK 0 906 1 4 1283 19914 162 30 51 chr4 91541959 91544425 -64085695 - Lx4A LINE L1 -1678 4199 1727 4 1283 268 143 53 18 chr4 91544425 91544482 -64085638 - RLTR12B LTR ERVK -69 459 401 4 1283 19914 162 30 51 chr4 91544482 91545319 -64084801 - Lx4A LINE L1 -1678 1726 886 4 1283 29 0 0 0 chr4 91545854 91545883 -64084237 + AT_rich Low_complexity Low_complexity 1 29 0 4 1283 4084 135 6 25 chr4 91546354 91547032 -64083088 - L1_Mus3 LINE L1 -2 5881 5217 5 1283 5333 81 19 0 chr4 91547032 91547761 -64082359 + L1_Mus3 LINE L1 5896 6638 0 5 1283 597 83 0 0 chr4 91548098 91548182 -64081938 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1283 1029 61 0 8 chr4 91548430 91548563 -64081557 + B1_Mus2 SINE Alu 3 134 -13 5 1283 378 0 0 0 chr4 91548563 91548605 -64081515 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 5 1283 206 267 16 16 chr4 91549313 91549374 -64080746 - MIR3 SINE MIR -46 162 102 5 1283 553 286 75 74 chr4 91550974 91551237 -64078883 - MLT1E1 LTR MaLR -11 669 418 5 1283 492 281 71 82 chr4 91551403 91551585 -64078535 + B3A SINE B2 3 182 -34 5 1283 552 284 47 94 chr4 91551621 91551789 -64078331 - Lx6 LINE L1 -16 7444 7283 5 1283 1425 171 73 0 chr4 91551789 91552063 -64078057 + Lx3C LINE L1 6680 6973 -3 5 1283 552 284 47 94 chr4 91552063 91552127 -64077993 - Lx6 LINE L1 -178 7282 7223 5 1283 8351 44 1 2 chr4 91552166 91553612 -64076508 - L1Md_F2 LINE L1 -3 6579 5135 5 1283 444 289 15 23 chr4 91553612 91553743 -64076377 - Lx6 LINE L1 -224 7236 7107 5 1283 25 0 0 0 chr4 91553759 91553784 -64076336 + AT_rich Low_complexity Low_complexity 1 25 0 6 1283 312 187 143 0 chr4 91553805 91553853 -64076267 - L1MA6 LINE L1 -114 6186 6129 6 1283 261 0 0 0 chr4 91553853 91553882 -64076238 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1283 312 187 143 0 chr4 91553882 91553924 -64076196 - L1MA6 LINE L1 -172 6128 6084 6 1283 459 332 127 37 chr4 91554750 91554842 -64075278 - L1M5 LINE L1 -756 5390 5294 6 1283 776 57 9 0 chr4 91554842 91554948 -64075172 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 6 1283 459 332 127 37 chr4 91554948 91555077 -64075043 - L1M5 LINE L1 -853 5293 5153 6 1283 312 359 13 0 chr4 91555077 91555236 -64074884 + RSINE1 SINE B4 5 165 0 6 1283 459 332 127 37 chr4 91555236 91555602 -64074518 - L1M5 LINE L1 -994 5152 4751 6 1283 282 340 46 39 chr4 91556774 91556927 -64073193 - LTR33 LTR ERVL -352 163 10 6 1283 251 323 84 30 chr4 91557314 91557445 -64072675 + MER58A DNA MER1_type 17 154 -70 6 1283 311 286 24 0 chr4 91559261 91559345 -64070775 + MTEb LTR MaLR 294 379 0 6 1283 27 92 0 0 chr4 91559548 91559624 -64070496 + AT_rich Low_complexity Low_complexity 1 76 0 6 1283 21 0 0 0 chr4 91559716 91559737 -64070383 + AT_rich Low_complexity Low_complexity 1 21 0 7 1283 6980 132 11 6 chr4 91559738 91561127 -64068993 - Lx LINE L1 -6 6648 5252 7 1283 37863 30 0 0 chr4 91561128 91567552 -64062568 - L1Md_T LINE L1 0 6585 65 7 1283 3254 167 0 3 chr4 91567556 91568127 -64061993 - L1_Mur2 LINE L1 -620 5257 4689 7 1283 7486 153 22 27 chr4 91568125 91569550 -64060570 + L1_Mur2 LINE L1 3255 4672 -1205 7 1283 510 311 0 43 chr4 91569854 91570042 -64060078 - B3A SINE B2 -16 182 3 7 1283 225 65 0 0 chr4 91571140 91571171 -64058949 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1283 299 273 104 1 chr4 91571414 91571512 -64058608 - PB1D7 SINE Alu -27 122 16 7 1283 21 0 0 0 chr4 91573448 91573469 -64056651 + AT_rich Low_complexity Low_complexity 1 21 0 7 1283 262 359 89 27 chr4 91575716 91575862 -64054258 + MIRb SINE MIR 12 166 -102 7 1283 760 324 57 41 chr4 91576311 91576698 -64053422 + Lx8 LINE L1 6762 7154 -319 7 1283 228 227 60 15 chr4 91577383 91577450 -64052670 - L1M4c LINE L1 -6023 361 292 8 1283 643 223 38 0 chr4 91577483 91577640 -64052480 - L1M4c LINE L1 -6207 177 15 8 1283 25 51 0 0 chr4 91578374 91578413 -64051707 + AT_rich Low_complexity Low_complexity 1 39 0 8 1283 21 0 0 0 chr4 91578615 91578636 -64051484 + AT_rich Low_complexity Low_complexity 1 21 0 8 1283 243 400 25 0 chr4 91578858 91578978 -64051142 + RSINE1 SINE B4 2 124 -41 8 1283 324 0 0 0 chr4 91578978 91579014 -64051106 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1283 2068 143 104 11 chr4 91579522 91579896 -64050224 + Lx4A LINE L1 6646 7054 -4 8 1283 3121 202 16 23 chr4 91579919 91580855 -64049265 + L1_Mur3 LINE L1 1006 1931 -3949 8 1283 340 189 244 8 chr4 91580855 91580978 -64049142 + L1_Mur3 LINE L1 1891 2042 -3838 8 1283 582 15 0 0 chr4 91581303 91581370 -64048750 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 1283 932 304 87 36 chr4 91581464 91582615 -64047505 + L1MB1 LINE L1 4910 6111 -78 8 1283 368 241 146 18 chr4 91583391 91583501 -64046619 + ID_B1 SINE B4 96 219 -5 8 1283 284 274 0 124 chr4 91583397 91583518 -64046602 + B1F1 SINE Alu 21 126 -23 9 1283 238 262 47 23 chr4 91584134 91584220 -64045900 + L1M1 LINE L1 5831 5918 -382 9 1283 254 317 9 19 chr4 91585125 91585231 -64044889 + MIR SINE MIR 82 186 -76 9 1283 247 305 29 0 chr4 91585246 91585351 -64044769 - L1MC4 LINE L1 -980 7062 6955 9 1283 21 57 0 0 chr4 91585390 91585425 -64044695 + AT_rich Low_complexity Low_complexity 1 35 0 9 1283 756 0 0 0 chr4 91586267 91586351 -64043769 + (TTC)n Simple_repeat Simple_repeat 1 84 0 9 1283 315 113 0 0 chr4 91588019 91588072 -64042048 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1283 414 108 0 0 chr4 91588072 91588146 -64041974 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1283 411 224 65 18 chr4 91589067 91589235 -64040885 + Lx9 LINE L1 7468 7643 -1 9 1283 446 326 36 40 chr4 91589235 91589680 -64040440 + L1_Rod LINE L1 4653 5095 -1048 9 1283 708 298 46 12 chr4 91589734 91589975 -64040145 + Lx9 LINE L1 6406 6654 -990 1 1283 595 289 121 19 chr4 91590160 91590484 -64039636 + L1_Rod LINE L1 5318 5713 -584 9 1283 180 0 0 0 chr4 91590484 91590504 -64039616 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1283 595 301 119 15 chr4 91590504 91590597 -64039523 + L1_Rod LINE L1 5646 5807 -490 9 1283 631 192 14 7 chr4 91590905 91591052 -64039068 + CT-rich Low_complexity Low_complexity 3 150 0 1 1283 578 274 75 89 chr4 91591827 91592119 -64038001 + MLT2B4 LTR ERVL 132 419 -137 1 1283 211 312 82 31 chr4 91592309 91592468 -64037652 - L2 LINE L2 -1791 1628 1462 1 1283 3434 172 50 25 chr4 91592495 91593170 -64036950 + Lx2B LINE L1 6305 6996 -4 1 1283 385 45 56 3 chr4 91593938 91594008 -64036112 - L1_Mus1 LINE L1 -639 5999 5926 1 1283 1715 55 0 5 chr4 91594008 91594228 -64035892 + L1_Mus1 LINE L1 6347 6565 -2 1 1283 795 48 0 0 chr4 91594543 91594647 -64035473 + (TG)n Simple_repeat Simple_repeat 2 105 0 1 1283 360 64 0 0 chr4 91595614 91595661 -64034459 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1 1283 181 364 97 7 chr4 91595939 91596083 -64034037 + MIRc SINE MIR 78 234 -34 1 1283 388 161 55 55 chr4 91596826 91596971 -64033149 - Lx9 LINE L1 -9 7635 7491 1 1283 33 43 0 0 chr4 91596991 91597038 -64033082 + AT_rich Low_complexity Low_complexity 1 47 0 1 1283 999 152 34 51 chr4 91597051 91597287 -64032833 - Lx9 LINE L1 -126 7518 7287 1 1283 795 289 5 0 chr4 91597303 91597514 -64032606 - B3 SINE B2 -3 213 2 1 1283 262 336 122 0 chr4 91597527 91597634 -64032486 + MER117 DNA MER1_type 37 156 -41 1 1283 549 44 0 0 chr4 91598677 91598745 -64031375 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1283 1111 213 44 18 chr4 91600144 91600417 -64029703 + Lx4B LINE L1 6723 7002 -56 1 1283 26 30 0 0 chr4 91600439 91600472 -64029648 + AT_rich Low_complexity Low_complexity 1 33 0 1 1283 225 0 0 0 chr4 91601371 91601396 -64028724 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1283 827 95 15 0 chr4 91601397 91601534 -64028586 - L1_Mus3 LINE L1 -15 6623 6485 1 1283 1376 85 35 0 chr4 91601534 91601734 -64028386 + L1_Mus4 LINE L1 5795 6001 -635 1 1283 23 68 0 0 chr4 91601803 91601847 -64028273 + AT_rich Low_complexity Low_complexity 1 44 0 1 1283 768 218 86 6 chr4 91601924 91602099 -64028021 - Lx4B LINE L1 -2 7056 6868 1 1283 945 207 5 27 chr4 91602097 91602281 -64027839 + Lx4B LINE L1 6706 6885 -173 1 1283 23 0 0 0 chr4 91602403 91602426 -64027694 + AT_rich Low_complexity Low_complexity 1 23 0 1 1283 450 0 0 0 chr4 91603722 91603772 -64026348 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 1283 387 0 0 0 chr4 91604107 91604150 -64025970 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1283 391 310 26 0 chr4 91604164 91604280 -64025840 - PB1 SINE Alu -8 119 1 1 1283 1121 68 7 0 chr4 91605174 91605320 -64024800 - B1_Mus1 SINE Alu 0 148 2 1 1283 24 0 0 0 chr4 91606808 91606832 -64023288 + AT_rich Low_complexity Low_complexity 1 24 0 1 1283 22 35 0 0 chr4 91607456 91607485 -64022635 + AT_rich Low_complexity Low_complexity 1 29 0 1 1283 477 0 0 0 chr4 91607668 91607721 -64022399 + (CAAAC)n Simple_repeat Simple_repeat 1 53 0 1 1283 3270 121 4 8 chr4 91608020 91608520 -64021600 - Lx3A LINE L1 -1 6980 6483 1 1283 180 263 72 84 chr4 91608917 91609000 -64021120 - MIRb SINE MIR -59 209 128 1 1283 1125 321 78 25 chr4 91609015 91609819 -64020301 - Lx8 LINE L1 0 7473 6627 1 1283 1258 31 19 0 chr4 91609901 91610062 -64020058 + L1Md_F3 LINE L1 6407 6570 -14 1 1283 21 0 0 0 chr4 91610067 91610088 -64020032 + AT_rich Low_complexity Low_complexity 1 21 0 1 1283 971 171 80 5 chr4 91611564 91611764 -64018356 + URR1A DNA MER1_type 10 224 -2 1 1283 342 343 29 39 chr4 91612103 91612309 -64017811 - MIR SINE MIR -46 216 13 1 1283 405 328 32 0 chr4 91612313 91612438 -64017682 - Lx9 LINE L1 -1159 6485 6357 1 1283 1326 244 58 34 chr4 91612495 91613004 -64017116 - Lx9 LINE L1 -1687 5957 5401 1 1283 1462 237 36 30 chr4 91612999 91613465 -64016655 - Lx9 LINE L1 -660 5187 4719 1 1283 195 129 0 0 chr4 91614029 91614060 -64016060 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1283 296 289 35 49 chr4 91615045 91615187 -64014933 - B1F1 SINE Alu -5 144 5 1 1283 189 74 0 0 chr4 91615645 91615672 -64014448 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1283 754 268 67 26 chr4 91615901 91616096 -64014024 - B3 SINE B2 -9 207 5 1 1283 183 129 0 0 chr4 91616478 91616509 -64013611 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 1283 415 311 110 42 chr4 91616748 91617057 -64013063 - MTEb LTR MaLR -49 330 1 1 1283 576 291 211 14 chr4 91617108 91617383 -64012737 + MTEb LTR MaLR 49 377 -2 1 1283 274 286 12 0 chr4 91618646 91618730 -64011390 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1283 389 250 135 18 chr4 91618806 91618930 -64011190 - B1_Mur2 SINE Alu 0 149 1 1 1284 744 132 0 0 chr4 91620240 91620369 -64009751 + (TC)n Simple_repeat Simple_repeat 2 130 0 1 1284 510 169 21 42 chr4 91622977 91623126 -64006994 - RMER17C LTR ERVK -131 279 140 1 1284 308 119 0 29 chr4 91623126 91623195 -64006925 + L1_Mus3 LINE L1 6571 6637 -1 1 1284 673 161 23 67 chr4 91623195 91623372 -64006748 - RMER17C LTR ERVK -284 126 1 1 1284 588 310 74 48 chr4 91623538 91623774 -64006346 - B4A SINE B4 -12 280 35 1 1284 362 269 28 19 chr4 91623797 91623903 -64006217 - RLTR23 LTR ERV1 0 430 324 1 1284 546 268 58 67 chr4 91625462 91625670 -64004450 + MTE2a LTR MaLR 3 208 -171 1 1284 23 78 0 0 chr4 91626334 91626385 -64003735 + AT_rich Low_complexity Low_complexity 1 51 0 1 1284 225 328 164 0 chr4 91626606 91626722 -64003398 + MIR SINE MIR 98 232 -30 1 1284 972 82 0 0 chr4 91627303 91627438 -64002682 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 1284 558 352 17 58 chr4 91627442 91627801 -64002319 - Lx9 LINE L1 -232 7412 7069 1 1284 3046 210 53 32 chr4 91628902 91629596 -64000524 + RMER6D LTR ERVK 1 709 -11 1 1284 983 217 10 79 chr4 91629711 91630013 -64000107 - Lx5 LINE L1 -393 5791 5523 1 1284 297 0 0 0 chr4 91631104 91631137 -63998983 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1284 222 118 0 0 chr4 91631153 91631187 -63998933 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1284 200 262 16 0 chr4 91631249 91631310 -63998810 + (CCA)n Simple_repeat Simple_repeat 2 63 0 1 1284 19139 182 3 36 chr4 91631347 91631782 -63998338 + L1Md_F2 LINE L1 1713 2107 -3779 1 1284 807 64 0 0 chr4 91631782 91631892 -63998228 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 1 1284 24600 92 3 3 chr4 91631892 91635463 -63994657 + L1Md_F2 LINE L1 2102 5589 -297 1 1284 7248 84 4 7 chr4 91635463 91636462 -63993658 + L1Md_F2 LINE L1 5587 6582 0 1 1284 204 40 0 0 chr4 91636469 91636494 -63993626 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1284 216 0 0 0 chr4 91636504 91636528 -63993592 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1284 3305 106 40 33 chr4 91636592 91637111 -63993009 - L1Md_F2 LINE L1 -16 6566 6044 1 1284 4520 82 11 0 chr4 91637111 91637746 -63992374 - L1_Mm LINE L1 -1535 4348 3707 1 1284 396 0 0 0 chr4 91638390 91638434 -63991686 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1284 276 30 0 0 chr4 91638974 91639007 -63991113 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1284 2908 21 3 0 chr4 91639123 91639459 -63990661 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1284 55120 24 15 6 chr4 91639459 91645872 -63984248 + IAPEz-int LTR ERVK 8 6481 0 1 1284 2908 21 3 0 chr4 91645872 91646208 -63983912 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1284 1290 65 0 0 chr4 91646282 91646591 -63983529 + (CA)n Simple_repeat Simple_repeat 1 309 0 1 1284 573 335 23 6 chr4 91646723 91646900 -63983220 - MLT1H1 LTR MaLR -58 497 318 1 1284 305 196 124 143 chr4 91647279 91647354 -63982766 - Lx7 LINE L1 -264 7432 7348 1 1284 369 0 0 0 chr4 91647354 91647395 -63982725 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1284 305 196 124 143 chr4 91647395 91647409 -63982711 - Lx7 LINE L1 -349 7347 7338 1 1284 2967 18 9 3 chr4 91647409 91647752 -63982368 + ORR1A0 LTR MaLR 1 345 -1 1 1284 183 80 0 0 chr4 91647752 91647777 -63982343 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 1 1284 305 196 124 143 chr4 91647777 91647846 -63982274 - Lx7 LINE L1 -359 7337 7276 1 1284 436 304 86 99 chr4 91649046 91649379 -63980741 - ORR1E LTR MaLR -2 357 27 1 1284 1929 145 3 79 chr4 91649379 91649732 -63980388 - ORR1A3 LTR MaLR 0 326 1 1 1284 436 304 86 99 chr4 91649732 91649760 -63980360 - ORR1E LTR MaLR -333 26 1 1 1284 315 347 108 58 chr4 91650014 91650274 -63979846 + LTR16E2 LTR ERVL 217 559 -9 1 1284 1100 40 20 0 chr4 91650384 91650585 -63979535 - L1Md_F2 LINE L1 0 6582 6431 1 1284 225 235 15 0 chr4 91650585 91650599 -63979521 + polypyrimidine Low_complexity Low_complexity 3 16 0 1 1284 339 386 90 8 chr4 91650852 91651108 -63979012 + Tigger7 DNA MER2_type 32 308 -2183 1 1284 590 272 66 51 chr4 91651447 91651780 -63978340 - RLTR15 LTR ERVK -21 338 1 1 1284 4193 213 62 39 chr4 91651782 91651841 -63978279 - MYSERV6-int LTR ERVK -2 8957 8899 1 1284 3140 72 2 16 chr4 91651841 91652266 -63977854 + L1Md_F2 LINE L1 6162 6580 -2 1 1284 4193 213 62 39 chr4 91652266 91653369 -63976751 - MYSERV6-int LTR ERVK -61 8898 7768 1 1284 525 309 50 20 chr4 91653377 91653575 -63976545 - RMER4A LTR ERVK -9 457 254 1 1284 1485 289 54 38 chr4 91653578 91654192 -63975928 - MYSERV6-int LTR ERVK -1424 5126 4503 1 1284 2758 219 38 20 chr4 91654201 91654944 -63975176 - MYSERV6-int LTR ERVK -1936 3324 2105 1 1284 452 201 5 78 chr4 91655041 91655246 -63974874 - RMER17C LTR ERVK -136 274 85 1 1284 1589 338 68 59 chr4 91655252 91655422 -63974698 - MYSERV6-int LTR ERVK -6999 1960 1785 1 1284 188 255 21 0 chr4 91655422 91655469 -63974651 - L3 LINE CR1 -3573 916 869 1 1284 1589 338 68 59 chr4 91655469 91656785 -63973335 - MYSERV6-int LTR ERVK -6999 1784 414 1 1284 26 0 0 0 chr4 91657919 91657945 -63972175 + AT_rich Low_complexity Low_complexity 1 26 0 1 1284 477 0 0 0 chr4 91658049 91658102 -63972018 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1284 13103 178 26 112 chr4 91658110 91658798 -63971322 + L1_Mur2 LINE L1 2061 2753 -3124 1 1284 3884 56 24 8 chr4 91658798 91659304 -63970816 - L1Md_F3 LINE L1 -14 6570 6057 1 1284 13103 178 26 112 chr4 91659304 91662213 -63967907 + L1_Mur2 LINE L1 2754 5348 -529 1 1284 180 0 0 0 chr4 91662213 91662233 -63967887 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1284 7818 57 1 1 chr4 91662329 91663482 -63966638 - L1Md_F2 LINE L1 -12 6570 5418 1 1284 480 170 28 0 chr4 91663477 91663583 -63966537 + L1_Mur2 LINE L1 5341 5449 -428 1 1284 1711 223 127 5 chr4 91663577 91664237 -63965883 + Lx5 LINE L1 6306 7046 -4 1 1284 963 211 42 0 chr4 91664267 91664480 -63965640 + URR1A DNA MER1_type 1 222 -4 1 1284 585 0 0 0 chr4 91666181 91666246 -63963874 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1284 188 245 20 20 chr4 91666616 91666666 -63963454 + L3 LINE CR1 3239 3288 -1201 2 1284 735 178 50 44 chr4 91667476 91667635 -63962485 - B2_Mm2 SINE B2 -10 185 26 2 1284 600 285 24 63 chr4 91667842 91668048 -63962072 - B3A SINE B2 0 198 1 2 1284 216 158 0 0 chr4 91668596 91668634 -63961486 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 1284 657 157 0 0 chr4 91669074 91669189 -63960931 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 2 1284 28 48 0 0 chr4 91669355 91669397 -63960723 + AT_rich Low_complexity Low_complexity 1 42 0 2 1284 7016 129 15 63 chr4 91669464 91669938 -63960182 + Lx2A LINE L1 5799 6263 -745 2 1284 7593 84 20 1 chr4 91669938 91670942 -63959178 + RLTR13D5 LTR ERVK 1 1023 0 2 1284 7016 129 15 63 chr4 91670942 91671737 -63958383 + Lx2A LINE L1 6264 7007 -1 2 1284 1381 184 59 50 chr4 91673111 91673513 -63956607 - RMER16 LTR ERVK 0 533 1 2 1284 232 301 123 20 chr4 91673700 91673846 -63956274 + L2 LINE L2 2007 2167 -1252 2 1284 1062 88 7 7 chr4 91674739 91674887 -63955233 - B1_Mus1 SINE Alu 0 148 1 2 1284 845 19 10 0 chr4 91675233 91675336 -63954784 + (GAA)n Simple_repeat Simple_repeat 2 105 0 2 1284 7416 31 0 0 chr4 91675747 91676617 -63953503 - L1Md_T LINE L1 -1 6581 5712 2 1284 3916 39 0 0 chr4 91676610 91677076 -63953044 + L1Md_T LINE L1 5260 5725 -158 2 1284 309 109 0 0 chr4 91677228 91677274 -63952846 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 2 1284 327 85 0 0 chr4 91677648 91677695 -63952425 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 2 1284 1068 259 42 16 chr4 91678176 91678482 -63951638 - MTC LTR MaLR -7 414 101 2 1284 922 113 0 0 chr4 91678482 91678606 -63951514 - Lx3A LINE L1 -159 6822 6699 2 1284 488 158 0 10 chr4 91678606 91678702 -63951418 + Lx3A LINE L1 6884 6978 -3 2 1284 554 217 43 0 chr4 91678749 91678864 -63951256 - MTC LTR MaLR -299 120 1 2 1284 6319 62 0 0 chr4 91679027 91679828 -63950292 + L1Md_T LINE L1 5782 6582 0 2 1284 21 36 0 0 chr4 91680086 91680114 -63950006 + AT_rich Low_complexity Low_complexity 1 28 0 2 1284 23 0 0 0 chr4 91680608 91680631 -63949489 + AT_rich Low_complexity Low_complexity 1 23 0 2 1284 18056 147 89 4 chr4 91680631 91686290 -63943830 - L1Md_F2 LINE L1 -3 6579 392 2 1284 965 82 0 0 chr4 91686347 91686482 -63943638 - L1_Mus1 LINE L1 0 6567 6433 2 1284 533 333 94 33 chr4 91686996 91687241 -63942879 + B4A SINE B4 25 284 -8 2 1284 315 0 0 0 chr4 91687281 91687316 -63942804 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1284 495 0 0 0 chr4 91687316 91687370 -63942750 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1284 215 317 38 38 chr4 91687723 91687854 -63942266 + L2a LINE L2 1630 1760 -1659 2 1284 342 307 141 45 chr4 91688262 91688460 -63941660 + LTR33C LTR ERVL 411 627 -2 2 1284 266 65 0 42 chr4 91688973 91689021 -63941099 + L1Md_F2 LINE L1 6525 6570 -12 2 1284 678 299 26 0 chr4 91689587 91689741 -63940379 - RSINE1 SINE B4 0 165 8 2 1284 206 328 0 0 chr4 91689741 91689808 -63940312 + L2a LINE L2 3342 3408 -18 2 1284 298 82 66 0 chr4 91690421 91690482 -63939638 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 1284 527 354 89 75 chr4 91690492 91690773 -63939347 - B4A SINE B4 0 292 8 2 1284 2137 217 19 25 chr4 91692123 91692653 -63937467 + RLTR11A2 LTR ERVK 1 527 0 2 1284 1013 246 22 14 chr4 91692673 91692896 -63937224 - RLTR11A LTR ERVK -293 235 11 2 1284 231 280 0 96 chr4 91693113 91693259 -63936861 + L1M6 LINE L1 917 1048 -5448 2 1284 1270 224 98 20 chr4 91693491 91693838 -63936282 + ORR1D1 LTR MaLR 1 374 0 2 1284 1193 62 0 0 chr4 91694377 91694523 -63935597 + B1_Mm SINE Alu 2 147 0 2 1284 209 119 0 23 chr4 91694523 91694566 -63935554 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1284 227 197 45 0 chr4 91694886 91694952 -63935168 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 2 1284 1070 187 22 14 chr4 91695324 91695546 -63934574 - URR1B DNA MER1_type 0 225 2 2 1284 2132 93 9 40 chr4 91696431 91696777 -63933343 + Lx3A LINE L1 6641 6975 -6 2 1284 4021 150 12 85 chr4 91696870 91697685 -63932435 + Lx2 LINE L1 6241 6996 -1 2 1284 338 0 24 0 chr4 91697895 91697937 -63932183 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1284 414 0 0 0 chr4 91697937 91697982 -63932138 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1284 1163 68 0 0 chr4 91698476 91698623 -63931497 + B1_Mm SINE Alu 1 147 0 2 1284 294 195 0 0 chr4 91698626 91698703 -63931417 + A-rich Low_complexity Low_complexity 1 77 0 2 1284 1173 231 81 12 chr4 91698704 91699050 -63931070 - Lx9 LINE L1 -4 7640 7271 2 1284 358 375 131 19 chr4 91699456 91699869 -63930251 + MLT1E3 LTR MaLR 137 595 -29 2 1284 2180 59 7 17 chr4 91699911 91700206 -63929914 - L1_Mus1 LINE L1 -1 6566 6275 2 1284 251 260 272 16 chr4 91702927 91703052 -63927068 - MLT2B2 LTR ERVL -8 554 398 2 1284 1035 109 0 20 chr4 91703373 91703509 -63926611 + B1_Mus1 SINE Alu 2 136 -12 2 1284 342 0 0 0 chr4 91703509 91703547 -63926573 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1284 1035 109 0 20 chr4 91703547 91703560 -63926560 + B1_Mus1 SINE Alu 137 148 0 2 1284 554 256 155 23 chr4 91703594 91703858 -63926262 - ERVL-B4-int LTR ERVL -130 5584 5286 2 1284 28 0 0 0 chr4 91703914 91703942 -63926178 + AT_rich Low_complexity Low_complexity 1 28 0 2 1284 271 221 38 38 chr4 91703960 91704040 -63926080 - ERVL-B4-int LTR ERVL -613 5144 5065 2 1284 1047 309 64 23 chr4 91704055 91704443 -63925677 + MTC LTR MaLR 1 404 -17 2 1284 1714 319 55 32 chr4 91705082 91706311 -63923809 + L1_Mur3 LINE L1 1784 3041 -2839 2 1284 777 292 93 50 chr4 91706723 91707141 -63922979 - ERVL-B4-int LTR ERVL -3647 2067 1632 2 1284 275 333 20 34 chr4 91707498 91707647 -63922473 - Lx7 LINE L1 -394 7302 7156 2 1284 844 311 120 12 chr4 91707661 91707987 -63922133 + Lx7 LINE L1 6743 7103 -593 2 1284 577 98 235 0 chr4 91708113 91708215 -63921905 - B1_Mus1 SINE Alu 0 148 23 2 1284 343 258 156 31 chr4 91708119 91708247 -63921873 - B4A SINE B4 -71 221 78 2 1284 280 344 84 9 chr4 91710149 91710363 -63919757 - ERVL-B4-int LTR ERVL -5055 659 430 2 1284 926 56 8 0 chr4 91710697 91710822 -63919298 + (TCTCC)n Simple_repeat Simple_repeat 3 128 0 2 1284 474 118 0 0 chr4 91710827 91710920 -63919200 + (TTTTTG)n Simple_repeat Simple_repeat 4 96 0 2 1284 257 359 20 34 chr4 91712705 91712852 -63917268 - B1F SINE Alu 0 149 5 2 1284 23 0 0 0 chr4 91713235 91713258 -63916862 + AT_rich Low_complexity Low_complexity 1 23 0 2 1284 6502 82 9 9 chr4 91714539 91715440 -63914680 - Lx3_Mus LINE L1 0 7009 6109 2 1284 795 339 75 6 chr4 91715443 91715980 -63914140 - L1MA7 LINE L1 -439 5852 5279 2 1284 257 278 115 39 chr4 91715994 91716210 -63913910 - L1MA7 LINE L1 -2167 3976 3758 2 1284 210 117 32 32 chr4 91716296 91716358 -63913762 + T-rich Low_complexity Low_complexity 2 63 0 2 1284 3385 63 0 14 chr4 91716867 91717304 -63912816 - L1_Mus1 LINE L1 -1 6566 6136 2 1284 1250 99 0 0 chr4 91717318 91717490 -63912630 + L1_Mus1 LINE L1 5997 6168 -399 2 1284 26 30 0 0 chr4 91717565 91717598 -63912522 + AT_rich Low_complexity Low_complexity 1 33 0 2 1284 431 336 29 81 chr4 91717739 91718047 -63912073 - B4 SINE B4 0 292 1 2 1284 1466 78 0 35 chr4 91718077 91718304 -63911816 - L1Md_F3 LINE L1 0 6584 6366 2 1284 2937 138 15 0 chr4 91718311 91718773 -63911347 - Lx3A LINE L1 -8 6973 6505 2 1284 329 300 119 57 chr4 91718954 91719325 -63910795 - L1M4 LINE L1 -1227 4919 4526 2 1284 626 290 21 0 chr4 91719343 91719529 -63910591 + Lx7 LINE L1 7163 7352 -344 2 1284 243 61 0 0 chr4 91719530 91719563 -63910557 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1284 23 54 0 0 chr4 91720008 91720045 -63910075 + AT_rich Low_complexity Low_complexity 1 37 0 2 1284 1017 103 7 0 chr4 91720214 91720360 -63909760 - B1_Mus2 SINE Alu 0 147 1 2 1284 415 361 25 43 chr4 91720475 91720637 -63909483 - RSINE1 SINE B4 -2 163 5 2 1284 321 26 0 0 chr4 91720777 91720815 -63909305 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1284 476 90 39 0 chr4 91720815 91720893 -63909227 - Lx9 LINE L1 -168 7476 7396 2 1284 270 171 53 67 chr4 91721763 91721838 -63908282 + L1_Mur1 LINE L1 2481 2554 -3332 2 1284 574 85 21 0 chr4 91722447 91722541 -63907579 + (TC)n Simple_repeat Simple_repeat 1 96 0 2 1284 243 307 120 22 chr4 91722643 91722826 -63907294 + MIRc SINE MIR 9 209 -59 2 1284 8684 113 29 7 chr4 91722975 91724487 -63905633 - Lx3_Mus LINE L1 -4 7005 5456 2 1284 1503 204 81 64 chr4 91724490 91724910 -63905210 - RMER1C Other Other -38 1304 878 2 1284 670 312 108 25 chr4 91725316 91725556 -63904564 - B4A SINE B4 -27 265 6 2 1284 317 234 16 116 chr4 91725849 91725970 -63904150 + HAL1-2a_MD LINE L1 802 910 -2114 2 1284 436 341 30 0 chr4 91726086 91726218 -63903902 + RSINE1 SINE B4 8 143 -22 2 1284 204 243 29 0 chr4 91727304 91727374 -63902746 + (CAAAC)n Simple_repeat Simple_repeat 3 74 0 2 1284 243 0 0 0 chr4 91728527 91728554 -63901566 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1284 255 367 44 12 chr4 91729755 91729915 -63900205 + MIRb SINE MIR 50 214 -54 2 1284 1085 89 7 0 chr4 91730532 91730678 -63899442 - B1_Mus2 SINE Alu 0 147 1 2 1284 9003 3 0 0 chr4 91732264 91733793 -63896327 - L1Md_A LINE L1 0 6582 5054 2 1284 1595 21 10 0 chr4 91733791 91733983 -63896137 + L1_Mm LINE L1 3693 3886 -1997 2 1284 21 71 0 0 chr4 91734320 91734362 -63895758 + AT_rich Low_complexity Low_complexity 1 42 0 2 1284 1931 181 156 46 chr4 91734419 91734789 -63895331 - RMER6C LTR ERVK 0 690 328 2 1284 183 80 0 0 chr4 91734789 91734814 -63895306 + (AACTG)n Simple_repeat Simple_repeat 1 25 0 2 1284 1931 181 156 46 chr4 91734814 91734989 -63895131 - RMER6C LTR ERVK -363 327 85 2 1284 21 0 0 0 chr4 91735015 91735036 -63895084 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 585 274 63 84 chr4 91735263 91735354 -63894766 + Lx6 LINE L1 7201 7275 -185 2 1284 282 29 0 0 chr4 91735354 91735389 -63894731 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1284 585 274 63 84 chr4 91735389 91735536 -63894584 + Lx6 LINE L1 7276 7434 -26 2 1284 22 0 0 0 chr4 91735536 91735558 -63894562 + AT_rich Low_complexity Low_complexity 1 22 0 2 1284 400 314 31 19 chr4 91735672 91735831 -63894289 - Lx7 LINE L1 -585 7111 6951 3 1284 869 0 10 0 chr4 91735839 91735940 -63894180 + (TC)n Simple_repeat Simple_repeat 2 103 0 3 1284 223 286 52 0 chr4 91736470 91736547 -63893573 + PB1D10 SINE Alu 31 111 -6 3 1284 853 247 81 45 chr4 91737700 91738088 -63892032 + MTD LTR MaLR 4 405 -14 3 1284 248 191 30 45 chr4 91738105 91738171 -63891949 + RMER17D2 LTR ERVK 1 65 -744 3 1284 412 233 0 23 chr4 91738172 91738260 -63891860 + RLTR26 LTR ERVK 557 642 0 3 1284 23 0 0 0 chr4 91738260 91738283 -63891837 + AT_rich Low_complexity Low_complexity 1 23 0 3 1284 231 339 50 74 chr4 91738418 91738539 -63891581 - Tigger12c DNA MER2_type -482 252 135 3 1284 207 0 0 0 chr4 91739550 91739573 -63890547 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1284 261 0 0 0 chr4 91739623 91739652 -63890468 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1284 536 334 64 22 chr4 91739689 91740096 -63890024 - L1MA5 LINE L1 -430 5870 5447 3 1284 308 167 0 35 chr4 91740115 91740202 -63889918 - L1Md_F2 LINE L1 -4 6578 6495 3 1284 23 33 0 0 chr4 91740790 91740820 -63889300 + AT_rich Low_complexity Low_complexity 1 30 0 3 1284 239 374 22 11 chr4 91740847 91740939 -63889181 - B3A SINE B2 -31 167 75 3 1284 422 0 38 0 chr4 91740940 91740993 -63889127 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 1284 25 65 0 0 chr4 91741811 91741857 -63888263 + AT_rich Low_complexity Low_complexity 1 46 0 3 1284 8234 131 12 3 chr4 91741996 91743273 -63886847 - Lx2 LINE L1 0 6997 5710 3 1284 629 228 6 0 chr4 91743920 91744087 -63886033 + CT-rich Low_complexity Low_complexity 3 170 0 3 1284 184 206 0 0 chr4 91744713 91744747 -63885373 - L2 LINE L2 -874 2545 2512 3 1284 2531 159 50 15 chr4 91744919 91745456 -63884664 - Lx2 LINE L1 -510 5367 4812 3 1284 189 371 100 11 chr4 91747643 91747733 -63882387 + MIRb SINE MIR 15 112 -156 3 160 4864 214 41 157 chr4 91748015 91751484 -63878636 - Lx5 LINE L1 -5 7045 3962 3 1285 198 0 0 0 chr4 91752859 91752881 -63877239 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1285 284 276 46 56 chr4 91753663 91753859 -63876261 + Lx9 LINE L1 7451 7644 0 3 1285 427 266 142 20 chr4 91755064 91755310 -63874810 - L1MB3 LINE L1 -219 5964 5689 3 1285 282 309 98 33 chr4 91755710 91755984 -63874136 - L1M5 LINE L1 -2480 3666 3375 3 1285 312 27 0 0 chr4 91756928 91756965 -63873155 + (TAG)n Simple_repeat Simple_repeat 1 37 0 3 1285 1540 251 37 3 chr4 91756994 91757349 -63872771 - Lx6 LINE L1 -20 7440 7074 3 1285 1786 198 46 3 chr4 91757809 91758158 -63871962 + ORR1B2 LTR MaLR 3 366 -1 3 1285 23 0 0 0 chr4 91758355 91758378 -63871742 + AT_rich Low_complexity Low_complexity 1 23 0 3 1285 4599 99 40 3 chr4 91758524 91759254 -63870866 + Lx4A LINE L1 2270 3026 -2851 3 1285 1347 152 13 0 chr4 91759248 91759484 -63870636 - Lx4A LINE L1 -1871 4006 3768 3 1285 9285 141 45 43 chr4 91759480 91762515 -63867605 + Lx4A LINE L1 4020 7057 -1 3 1285 459 0 0 0 chr4 91768506 91768557 -63861563 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1285 283 339 87 77 chr4 91769042 91769250 -63860870 + L2 LINE L2 2310 2519 -900 3 1285 1456 112 27 27 chr4 91769828 91770084 -63860036 + L1_Mus3 LINE L1 6383 6638 0 3 1285 1014 325 102 20 chr4 91770259 91770847 -63859273 - Lx8 LINE L1 -553 6920 6285 3 1285 735 286 37 37 chr4 91770867 91771056 -63859064 + B3 SINE B2 4 192 -24 3 1285 1799 318 38 38 chr4 91771064 91771845 -63858275 + Lx9 LINE L1 6399 7179 -465 3 1285 24 53 0 0 chr4 91773221 91773259 -63856861 + AT_rich Low_complexity Low_complexity 1 38 0 3 1285 25 0 0 0 chr4 91773866 91773891 -63856229 + GC_rich Low_complexity Low_complexity 1 25 0 3 1285 494 316 94 49 chr4 91774955 91775361 -63854759 + HAL1 LINE L1 748 1171 -1336 3 1285 339 319 20 27 chr4 91776567 91776715 -63853405 - L3b LINE CR1 -123 359 213 3 1285 275 65 22 0 chr4 91777943 91777989 -63852131 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1285 22 35 0 0 chr4 91778860 91778889 -63851231 + AT_rich Low_complexity Low_complexity 1 29 0 3 1285 630 129 9 0 chr4 91778906 91779022 -63851098 - Lx LINE L1 -1 6653 6537 3 1285 288 274 47 28 chr4 91779266 91779394 -63850726 - MIRb SINE MIR -88 188 60 3 1285 273 128 0 0 chr4 91779636 91779683 -63850437 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1285 22 35 0 0 chr4 91781366 91781395 -63848725 + AT_rich Low_complexity Low_complexity 1 29 0 3 1285 860 186 6 0 chr4 91781632 91781809 -63848311 + CT-rich Low_complexity Low_complexity 1 178 0 3 1285 227 191 167 56 chr4 91781874 91781946 -63848174 + ORR1A3-int LTR MaLR 994 1073 -890 3 1285 410 274 234 10 chr4 91782210 91782402 -63847718 + LTR78 LTR ERV1 1070 1304 0 3 1285 459 0 0 0 chr4 91783017 91783068 -63847052 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1285 32 26 0 0 chr4 91783977 91784016 -63846104 + AT_rich Low_complexity Low_complexity 1 39 0 3 1285 1332 262 74 25 chr4 91784055 91784447 -63845673 + MTD LTR MaLR 9 419 0 3 1285 23 0 0 0 chr4 91786677 91786700 -63843420 + AT_rich Low_complexity Low_complexity 1 23 0 3 1285 243 0 0 0 chr4 91787267 91787294 -63842826 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1285 438 20 0 0 chr4 91787294 91787344 -63842776 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1285 717 114 0 0 chr4 91787939 91788062 -63842058 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1285 5283 122 31 22 chr4 91788507 91789377 -63840743 - Lx LINE L1 -2 6652 5775 3 1285 212 0 36 0 chr4 91790088 91790116 -63840004 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1285 378 299 16 33 chr4 91791210 91791331 -63838789 + B1F SINE Alu 21 139 -10 3 1285 315 0 0 0 chr4 91791335 91791370 -63838750 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 3 1285 206 151 37 19 chr4 91793270 91793324 -63836796 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1285 21 0 0 0 chr4 91794142 91794163 -63835957 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 26 30 0 0 chr4 91794354 91794387 -63835733 + AT_rich Low_complexity Low_complexity 1 33 0 3 1285 271 311 19 10 chr4 91794727 91794831 -63835289 + MER33 DNA MER1_type 2 106 -218 3 1285 317 201 199 14 chr4 91794858 91794999 -63835121 - Lx9 LINE L1 -21 7623 7457 3 1285 242 260 153 30 chr4 91795922 91796184 -63833936 + Charlie5 DNA MER1_type 2228 2521 -103 3 1285 438 327 76 8 chr4 91796198 91796365 -63833755 + B3 SINE B2 5 189 -27 3 1285 257 250 0 121 chr4 91796461 91796552 -63833568 + MER33 DNA MER1_type 245 324 0 3 1285 1037 96 7 0 chr4 91798163 91798309 -63831811 - B1_Mus2 SINE Alu 0 147 1 3 1285 230 260 38 76 chr4 91799197 91799276 -63830844 + PB1D10 SINE Alu 25 100 -49 3 1285 422 307 79 0 chr4 91800231 91800345 -63829775 + RSINE1 SINE B4 4 126 -39 3 1285 751 246 97 8 chr4 91801112 91801355 -63828765 + Lx3C LINE L1 6712 7053 -5 3 1285 27 73 0 0 chr4 91801425 91801480 -63828640 + AT_rich Low_complexity Low_complexity 1 55 0 3 1285 332 229 21 10 chr4 91801484 91801581 -63828539 - Lx9 LINE L1 -8 7636 7539 3 1285 613 207 190 0 chr4 91801573 91801747 -63828373 + Lx9 LINE L1 7321 7527 -117 3 1285 252 178 13 52 chr4 91801876 91801890 -63828230 + A-rich Low_complexity Low_complexity 6 18 0 3 1285 1154 57 0 0 chr4 91801890 91802030 -63828090 + B1_Mm SINE Alu 1 140 -7 3 1285 252 178 13 52 chr4 91802030 91802092 -63828028 + A-rich Low_complexity Low_complexity 19 79 0 3 1285 486 0 0 0 chr4 91802121 91802175 -63827945 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1285 998 137 0 0 chr4 91802217 91802363 -63827757 + B1_Mus1 SINE Alu 2 147 -1 3 1285 37 81 0 0 chr4 91802473 91802559 -63827561 + AT_rich Low_complexity Low_complexity 1 86 0 3 1285 284 173 0 0 chr4 91802559 91802611 -63827509 - MTD LTR MaLR -19 400 349 3 1285 412 307 0 17 chr4 91802623 91802739 -63827381 + MTC LTR MaLR 300 413 -8 3 1285 725 325 46 5 chr4 91802809 91803037 -63827083 - MTD LTR MaLR -92 329 78 3 1285 24 53 0 0 chr4 91803042 91803080 -63827040 + AT_rich Low_complexity Low_complexity 1 38 0 3 1285 427 281 57 45 chr4 91803596 91803900 -63826220 + Lx8 LINE L1 5791 6098 -1598 3 1285 216 111 0 0 chr4 91803948 91803984 -63826136 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1285 1233 53 0 0 chr4 91803984 91804153 -63825967 + (GA)n Simple_repeat Simple_repeat 1 170 0 3 1285 431 286 54 36 chr4 91804164 91804331 -63825789 + Lx8 LINE L1 6350 6519 -954 3 1285 9556 101 19 21 chr4 91804359 91805441 -63824679 - Lx3_Mus LINE L1 0 7009 5921 3 1285 195 42 0 0 chr4 91805441 91805465 -63824655 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1285 15375 98 15 8 chr4 91805465 91806124 -63823996 - Lx3_Mus LINE L1 -1089 5920 5267 3 1285 573 15 0 0 chr4 91806124 91806190 -63823930 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1285 15375 97 14 7 chr4 91806190 91807866 -63822254 - Lx3_Mus LINE L1 -620 5266 3583 3 1285 5541 95 8 0 chr4 91807864 91808686 -63821434 + Lx3_Mus LINE L1 2742 3570 -2316 3 1285 1334 333 52 42 chr4 91808691 91809409 -63820711 + Lx8 LINE L1 6538 7262 -211 3 1285 435 326 37 5 chr4 91809697 91809885 -63820235 + Lx9 LINE L1 6666 6859 -785 3 1285 231 366 32 0 chr4 91809980 91810073 -63820047 + MIRb SINE MIR 2 97 -171 3 1285 540 0 0 0 chr4 91810219 91810279 -63819841 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1285 496 284 97 49 chr4 91810465 91810732 -63819388 + B4A SINE B4 13 292 0 3 1285 22 35 0 0 chr4 91811487 91811516 -63818604 + AT_rich Low_complexity Low_complexity 1 29 0 3 1285 769 85 0 25 chr4 91812073 91812194 -63817926 - L1_Mus1 LINE L1 -1 6566 6449 3 1285 280 376 76 28 chr4 91814736 91814985 -63815135 - MIRb SINE MIR -2 266 6 3 1285 387 268 79 7 chr4 91815239 91815378 -63814742 - MER58B DNA MER1_type -16 325 177 3 1285 1864 195 41 39 chr4 91815379 91815790 -63814330 + Lx5 LINE L1 6639 7050 0 3 1285 183 42 0 0 chr4 91816443 91816467 -63813653 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 1285 265 98 0 0 chr4 91816502 91816543 -63813577 - L1Md_T LINE L1 -22 6560 6520 3 1285 502 325 28 52 chr4 91816628 91816839 -63813281 - B3 SINE B2 -10 206 1 3 1285 918 330 43 6 chr4 91817665 91818015 -63812105 + Lx8 LINE L1 6960 7322 -151 4 1285 1372 314 87 17 chr4 91818029 91818717 -63811403 + Lx8 LINE L1 6678 7413 -60 4 1285 297 0 0 0 chr4 91818748 91818781 -63811339 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1285 333 263 41 69 chr4 91820309 91820469 -63809651 + B4A SINE B4 1 152 -140 4 1285 303 130 0 0 chr4 91820599 91820653 -63809467 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1285 20652 161 29 8 chr4 91820705 91822931 -63807189 - Lx2B LINE L1 0 7000 4741 4 1285 279 0 0 0 chr4 91822931 91822962 -63807158 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1285 20652 181 34 19 chr4 91822962 91824186 -63805934 - Lx2B LINE L1 -1146 4740 3489 4 1285 185 0 40 0 chr4 91824186 91824211 -63805909 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1285 20652 182 35 22 chr4 91824211 91826540 -63803580 - Lx2B LINE L1 -2398 3488 798 4 1285 906 271 76 0 chr4 91826877 91827139 -63802981 - Lx3C LINE L1 -15 6985 6682 4 1285 1534 112 0 29 chr4 91827135 91827241 -63802879 - L1Md_F3 LINE L1 -198 6810 6711 4 1285 5913 127 24 66 chr4 91827241 91828308 -63801812 + RLTR13D5 LTR ERVK 1 1023 0 4 1285 1534 112 0 29 chr4 91828308 91828439 -63801681 - L1Md_F3 LINE L1 -298 6710 6580 4 1285 27865 51 3 1 chr4 91829536 91833755 -63796365 - L1Md_F3 LINE L1 -14 6570 2342 4 1285 210 118 0 0 chr4 91834269 91834303 -63795817 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1285 645 295 18 34 chr4 91835413 91835709 -63794411 + L1M2 LINE L1 5422 5723 -461 4 1285 378 0 0 0 chr4 91836647 91836689 -63793431 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 4 1285 4708 142 6 42 chr4 91836699 91837495 -63792625 - Lx2 LINE L1 0 6997 6230 4 1285 257 356 25 17 chr4 91837875 91837995 -63792125 - L2b LINE L2 -222 3153 3033 4 1285 401 95 16 0 chr4 91839129 91839192 -63790928 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1285 2770 247 75 50 chr4 91839353 91839701 -63790419 - Lx7 LINE L1 -2 7694 7369 4 1285 405 0 0 0 chr4 91839701 91839746 -63790374 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 4 1285 2770 247 75 50 chr4 91839746 91840315 -63789805 - Lx7 LINE L1 -328 7368 6754 4 1285 1866 240 58 19 chr4 91840317 91840382 -63789738 - Lx7 LINE L1 -1514 6182 6113 4 1285 543 31 0 0 chr4 91840382 91840447 -63789673 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1285 3814 206 29 47 chr4 91840447 91841572 -63788548 - Lx7 LINE L1 -1584 6112 4996 4 1285 2078 202 72 81 chr4 91841581 91842250 -63787870 + Lx7 LINE L1 4285 4947 -933 4 1285 228 331 66 46 chr4 91843776 91843928 -63786192 - L2c LINE L2 -44 3343 3189 4 1285 228 111 0 0 chr4 91844416 91844452 -63785668 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1285 23 54 0 0 chr4 91844523 91844560 -63785560 + AT_rich Low_complexity Low_complexity 1 37 0 4 1285 2240 116 27 102 chr4 91845166 91845537 -63784583 - Lx LINE L1 0 6654 6317 4 1285 4944 60 0 11 chr4 91845537 91846177 -63783943 - L1Md_F2 LINE L1 -1 6581 5949 4 1285 2240 116 27 102 chr4 91846177 91846256 -63783864 - Lx LINE L1 -338 6316 6238 4 1285 1386 243 70 8 chr4 91846256 91846613 -63783507 + MTD LTR MaLR 39 417 -2 4 1285 338 333 20 40 chr4 91846869 91847019 -63783101 - B4A SINE B4 -28 264 118 4 1285 35007 69 5 7 chr4 91847715 91853777 -63776343 - L1Md_F3 LINE L1 0 6584 540 4 1285 181 231 146 52 chr4 91854446 91854542 -63775578 + L3 LINE CR1 3983 4087 -402 4 1285 412 18 17 17 chr4 91854962 91855020 -63775100 + (TAA)n Simple_repeat Simple_repeat 1 58 0 4 1285 828 134 0 0 chr4 91855205 91855339 -63774781 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 4 1285 305 358 66 20 chr4 91855548 91855699 -63774421 + RSINE1 SINE B4 4 161 -4 4 1285 400 303 36 19 chr4 91856435 91856641 -63773479 - L1_Rod LINE L1 -329 5554 5357 4 1285 616 230 0 16 chr4 91856748 91856876 -63773244 - B1_Mur4 SINE Alu -11 139 14 4 1285 567 117 0 0 chr4 91856908 91857011 -63773109 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1285 303 350 108 11 chr4 91857024 91857284 -63772836 - L1M5 LINE L1 -838 5308 5024 4 1285 220 173 38 19 chr4 91857963 91858016 -63772104 + CT-rich Low_complexity Low_complexity 3 56 0 4 1285 723 275 250 41 chr4 91858661 91859340 -63770780 - L1_Mur3 LINE L1 -1526 4617 3763 4 1285 283 333 110 29 chr4 91859351 91859623 -63770497 - Lx8 LINE L1 -2 7471 7178 4 1285 471 172 70 10 chr4 91859839 91859939 -63770181 + ORR1C2 LTR MaLR 222 327 -57 4 1285 22 0 0 0 chr4 91859945 91859967 -63770153 + AT_rich Low_complexity Low_complexity 1 22 0 4 1285 821 175 19 0 chr4 91859969 91860129 -63769991 - L1_Mus3 LINE L1 -18 6620 6458 4 1285 5649 71 13 19 chr4 91860129 91860902 -63769218 + L1_Mus2 LINE L1 5649 6416 -150 4 1285 303 167 0 77 chr4 91860902 91860967 -63769153 + ORR1C2 LTR MaLR 311 370 -8 4 1285 264 315 78 34 chr4 91861204 91861500 -63768620 - L1_Rod LINE L1 -2466 3381 3073 4 1285 39 0 0 0 chr4 91861554 91861593 -63768527 + AT_rich Low_complexity Low_complexity 1 39 0 4 1285 367 268 70 8 chr4 91861780 91861908 -63768212 - L1_Mur3 LINE L1 -3214 2929 2794 4 1285 735 324 38 47 chr4 91862109 91862376 -63767744 - MTE2b LTR MaLR -1 378 112 4 1285 306 50 0 0 chr4 91862376 91862416 -63767704 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1285 735 324 38 47 chr4 91862416 91862466 -63767654 - MTE2b LTR MaLR -268 111 64 4 1285 234 295 16 0 chr4 91862471 91862532 -63767588 - MTE2b LTR MaLR -281 98 37 4 1285 3875 114 42 28 chr4 91862535 91863176 -63766944 + Lx LINE L1 6005 6654 0 4 1285 31 44 0 0 chr4 91863470 91863515 -63766605 + AT_rich Low_complexity Low_complexity 1 45 0 4 1285 311 0 26 0 chr4 91863968 91864007 -63766113 + (TTA)n Simple_repeat Simple_repeat 1 40 0 4 1285 1073 194 145 59 chr4 91864010 91864328 -63765792 - Lx3C LINE L1 -7 6969 6635 4 1285 531 0 0 0 chr4 91864335 91864394 -63765726 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1285 396 0 0 0 chr4 91865102 91865146 -63764974 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1285 266 0 29 0 chr4 91866061 91866095 -63764025 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1285 1072 96 7 7 chr4 91866095 91866231 -63763889 - B1_Mus1 SINE Alu -10 138 2 4 1285 21 82 0 0 chr4 91866231 91866280 -63763840 + AT_rich Low_complexity Low_complexity 1 49 0 4 1285 23 0 0 0 chr4 91867708 91867731 -63762389 + AT_rich Low_complexity Low_complexity 1 23 0 4 1285 960 259 111 15 chr4 91868894 91869219 -63760901 - Lx9 LINE L1 -41 7603 7248 4 1285 275 308 0 13 chr4 91870111 91870190 -63759930 + RSINE1 SINE B4 3 80 -85 4 1285 450 36 0 0 chr4 91870214 91870270 -63759850 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1285 314 301 92 42 chr4 91870634 91870894 -63759226 + L1M5 LINE L1 2887 3159 -2987 4 1285 1056 260 26 29 chr4 91871235 91871270 -63758850 - Lx5 LINE L1 -198 6860 6829 4 1285 570 54 0 0 chr4 91871270 91871344 -63758776 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1285 1386 222 8 1 chr4 91871344 91871617 -63758503 - Lx5 LINE L1 -230 6828 6542 4 1285 5116 110 22 1 chr4 91871661 91872415 -63757705 + Lx3A LINE L1 6201 6970 -11 4 1285 22 35 0 0 chr4 91872515 91872544 -63757576 + AT_rich Low_complexity Low_complexity 1 29 0 4 1285 27 0 0 0 chr4 91872617 91872644 -63757476 + AT_rich Low_complexity Low_complexity 1 27 0 4 1285 275 0 29 0 chr4 91872929 91872964 -63757156 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1285 341 301 89 20 chr4 91873158 91873304 -63756816 + RSINE1 SINE B4 2 157 -8 4 1285 22 35 0 0 chr4 91874542 91874571 -63755549 + AT_rich Low_complexity Low_complexity 1 29 0 4 1285 1459 142 0 4 chr4 91874574 91874808 -63755312 - Lx2 LINE L1 -17 6980 6748 4 1285 10015 47 3 0 chr4 91876014 91877968 -63752152 - L1Md_F3 LINE L1 -14 6570 4610 4 1285 5586 88 24 4 chr4 91878924 91879727 -63750393 + RLTR22_Mus LTR ERVK 1 819 -989 4 1285 1031 115 134 95 chr4 91879979 91880210 -63749910 + RLTR22_Mus LTR ERVK 1543 1782 -26 4 1285 31 44 0 0 chr4 91880458 91880503 -63749617 + AT_rich Low_complexity Low_complexity 1 45 0 4 1285 3988 149 46 12 chr4 91880503 91881202 -63748918 - Lx2A LINE L1 -1301 5707 4991 4 1285 243 0 0 0 chr4 91881222 91881249 -63748871 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1285 531 85 0 0 chr4 91881249 91881331 -63748789 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1286 21 0 0 0 chr4 91881891 91881912 -63748208 + AT_rich Low_complexity Low_complexity 1 21 0 4 1286 29 60 0 0 chr4 91882164 91882214 -63747906 + AT_rich Low_complexity Low_complexity 1 50 0 4 1286 29 28 0 0 chr4 91882281 91882317 -63747803 + AT_rich Low_complexity Low_complexity 1 36 0 4 1286 23 54 0 0 chr4 91883518 91883555 -63746565 + AT_rich Low_complexity Low_complexity 1 37 0 4 1286 316 290 62 37 chr4 91884519 91884680 -63745440 + RMER15 LTR ERVL 395 559 -16 4 1286 22 35 0 0 chr4 91885372 91885401 -63744719 + AT_rich Low_complexity Low_complexity 1 29 0 4 1286 483 33 0 0 chr4 91886260 91886321 -63743799 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1286 399 21 0 0 chr4 91886321 91886368 -63743752 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1286 324 0 0 0 chr4 91888127 91888163 -63741957 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1286 360 0 0 0 chr4 91888165 91888205 -63741915 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1286 747 67 16 25 chr4 91888227 91888349 -63741771 + L1Md_F2 LINE L1 6460 6580 -2 4 1286 1056 108 0 0 chr4 91889168 91889325 -63740795 + (TC)n Simple_repeat Simple_repeat 2 158 0 4 1286 24 53 0 0 chr4 91890605 91890643 -63739477 + AT_rich Low_complexity Low_complexity 1 38 0 4 1286 730 250 18 58 chr4 91895548 91895773 -63734347 + B3 SINE B2 1 216 0 4 1286 198 103 0 0 chr4 91896697 91896726 -63733394 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1286 697 214 143 32 chr4 91896973 91897222 -63732898 - MTD LTR MaLR -143 278 1 4 1286 777 28 9 18 chr4 91897250 91897360 -63732760 + (GTGTG)n Simple_repeat Simple_repeat 1 109 0 4 1286 41128 5 0 0 chr4 91897510 91904085 -63726035 - L1Md_A LINE L1 0 6582 7 4 1286 180 0 0 0 chr4 91904785 91904805 -63725315 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1286 361 170 43 71 chr4 91906534 91906718 -63723402 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 4 1286 196 214 53 18 chr4 91907017 91907074 -63723046 - MIRc SINE MIR -52 216 158 4 1286 347 330 9 9 chr4 91907076 91907186 -63722934 + HAL1-3A_ME LINE L1 1940 2049 -809 4 1286 198 0 0 0 chr4 91907186 91907208 -63722912 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 1286 370 311 40 13 chr4 91907460 91907610 -63722510 + MIRc SINE MIR 115 268 0 4 1286 435 16 47 0 chr4 91908356 91908420 -63721700 + (TTA)n Simple_repeat Simple_repeat 3 69 0 5 1286 241 321 131 6 chr4 91908450 91908610 -63721510 + L2a LINE L2 3242 3421 -5 5 1286 729 102 0 0 chr4 91909732 91909850 -63720270 - L1_Mus4 LINE L1 0 6636 6519 5 1286 1332 176 45 0 chr4 91910077 91910298 -63719822 - Lx5 LINE L1 -359 6691 6461 5 1286 4606 195 58 17 chr4 91910517 91911273 -63718847 + RLTR25B LTR ERVK 13 806 -222 5 1286 429 20 0 0 chr4 91911273 91911323 -63718797 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1286 4606 195 58 17 chr4 91911323 91911542 -63718578 + RLTR25B LTR ERVK 807 1027 -1 5 1286 2411 94 20 0 chr4 91911711 91912061 -63718059 + RLTR1B LTR ERV1 156 512 0 5 1286 23 0 0 0 chr4 91912229 91912252 -63717868 + AT_rich Low_complexity Low_complexity 1 23 0 5 1286 22 0 0 0 chr4 91912373 91912395 -63717725 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 427 327 93 0 chr4 91912433 91912583 -63717537 - B3 SINE B2 -52 164 1 5 1286 24 0 0 0 chr4 91913302 91913326 -63716794 + AT_rich Low_complexity Low_complexity 1 24 0 5 1286 210 233 16 16 chr4 91914222 91914283 -63715837 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1286 558 41 0 0 chr4 91914414 91914487 -63715633 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 5 1286 234 0 0 0 chr4 91914487 91914513 -63715607 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1286 215 307 40 0 chr4 91914526 91914627 -63715493 + (TATG)n Simple_repeat Simple_repeat 2 106 0 5 1286 186 43 0 0 chr4 91915188 91915211 -63714909 + (CCCCAA)n Simple_repeat Simple_repeat 1 23 0 5 1286 717 262 76 13 chr4 91915462 91915698 -63714422 - Lx9 LINE L1 -329 7315 7065 5 1286 243 305 24 24 chr4 91917398 91917482 -63712638 - L1M2 LINE L1 -1162 4981 4898 5 1286 909 227 60 48 chr4 91917489 91917757 -63712363 - Lx9 LINE L1 -417 7227 6957 5 1286 802 260 142 14 chr4 91917755 91918099 -63712021 + Lx9 LINE L1 7230 7617 -27 5 1286 1560 171 9 101 chr4 91918199 91918401 -63711719 - RMER17C LTR ERVK 0 410 231 5 1286 621 40 0 0 chr4 91918401 91918477 -63711643 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1286 1560 180 14 91 chr4 91918477 91918759 -63711361 - RMER17C LTR ERVK -523 435 15 5 1286 660 303 25 5 chr4 91919173 91919496 -63710624 - L1M2 LINE L1 -1316 4827 4498 5 1286 840 190 99 28 chr4 91919496 91919707 -63710413 + URR1A DNA MER1_type 1 226 0 5 1286 660 303 25 5 chr4 91919707 91919751 -63710369 - L1M2 LINE L1 -1646 4497 4453 5 1286 265 302 79 22 chr4 91919934 91920161 -63709959 - L1M4 LINE L1 -324 5854 5615 5 1286 870 258 81 79 chr4 91920640 91921049 -63709071 + MT2B LTR ERVL 13 554 -47 5 1286 228 220 40 0 chr4 91921098 91921148 -63708972 + MT2B LTR ERVL 533 584 0 5 1286 6104 166 58 18 chr4 91921709 91922455 -63707665 + Lx4A LINE L1 5825 6602 -456 5 1286 4819 122 46 3 chr4 91922455 91923209 -63706911 - Lx2 LINE L1 0 6997 6211 5 1286 6104 166 58 18 chr4 91923209 91923611 -63706509 + Lx4A LINE L1 6603 7019 -39 5 1286 26 23 0 23 chr4 91923611 91923629 -63706491 + AT_rich Low_complexity Low_complexity 1 18 0 5 1286 306 73 0 0 chr4 91923629 91923670 -63706450 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 1286 26 23 0 23 chr4 91923670 91923695 -63706425 + AT_rich Low_complexity Low_complexity 1 25 0 5 1286 1150 56 25 0 chr4 91923851 91924012 -63706108 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 5 1286 327 146 0 0 chr4 91924601 91924656 -63705464 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1286 252 86 0 0 chr4 91924828 91924863 -63705257 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1286 27 62 0 0 chr4 91925261 91925309 -63704811 + AT_rich Low_complexity Low_complexity 1 48 0 5 1286 301 363 126 23 chr4 91927424 91927599 -63702521 + LTR33 LTR ERVL 2 194 -321 5 1286 217 333 12 23 chr4 91927665 91927751 -63702369 + CT-rich Low_complexity Low_complexity 6 90 0 5 1286 949 143 109 43 chr4 91928202 91928413 -63701707 + Lx LINE L1 6430 6654 0 5 1286 22 0 0 0 chr4 91928424 91928446 -63701674 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 290 80 20 0 chr4 91928517 91928567 -63701553 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1286 410 292 25 8 chr4 91929824 91929945 -63700175 - B4 SINE B4 -153 139 17 5 1286 4453 146 5 25 chr4 91929945 91930734 -63699386 + Lx3C LINE L1 6196 6968 -8 5 1286 1406 75 11 0 chr4 91930857 91931045 -63699075 - B2_Mm1t SINE B2 -3 190 1 5 1286 24 32 0 0 chr4 91931065 91931096 -63699024 + AT_rich Low_complexity Low_complexity 1 31 0 5 1286 405 0 0 0 chr4 91931457 91931502 -63698618 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1286 294 29 0 0 chr4 91931502 91931536 -63698584 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1286 1161 229 4 0 chr4 91931679 91931923 -63698197 + Lx4B LINE L1 6235 6479 -579 5 1286 310 57 19 19 chr4 91932195 91932249 -63697871 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1286 306 391 8 0 chr4 91932325 91932453 -63697667 - MER5A DNA MER1_type -39 150 22 5 1286 283 404 22 0 chr4 91932803 91932939 -63697181 + MIRb SINE MIR 10 148 -120 5 1286 231 36 0 0 chr4 91933549 91933577 -63696543 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 5 1286 4213 223 45 16 chr4 91933578 91934486 -63695634 - Lx5 LINE L1 -13 7037 6104 5 1286 2329 188 9 5 chr4 91934505 91934939 -63695181 + L1_Mur2 LINE L1 5240 5675 -202 5 1286 1456 318 56 7 chr4 91935543 91936082 -63694038 + Lx8 LINE L1 6211 6775 -698 5 1286 344 304 24 16 chr4 91936218 91936345 -63693775 - Lx8 LINE L1 -181 7292 7165 5 1286 444 118 0 0 chr4 91936485 91936553 -63693567 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1286 960 348 101 6 chr4 91936564 91937140 -63692980 - Lx8 LINE L1 -586 6887 6270 5 1286 2829 73 3 3 chr4 91937155 91937537 -63692583 + L1_Mus2 LINE L1 6183 6564 -2 5 1286 26 0 0 0 chr4 91937752 91937778 -63692342 + AT_rich Low_complexity Low_complexity 1 26 0 5 1286 2337 87 0 15 chr4 91938338 91938675 -63691445 + L1Md_F2 LINE L1 6251 6582 0 5 1286 609 14 0 0 chr4 91938924 91938994 -63691126 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1286 429 306 33 23 chr4 91940445 91940659 -63689461 + B3 SINE B2 1 216 0 5 1286 21 82 0 0 chr4 91942838 91942887 -63687233 + AT_rich Low_complexity Low_complexity 1 49 0 5 1286 21 36 0 0 chr4 91943423 91943451 -63686669 + AT_rich Low_complexity Low_complexity 1 28 0 5 1286 756 112 93 31 chr4 91943498 91943518 -63686602 - Lx2A LINE L1 -1084 5924 5907 5 1286 2873 190 13 2 chr4 91943518 91944062 -63686058 - Lx LINE L1 -7 6647 6098 5 1286 747 108 88 44 chr4 91944062 91944177 -63685943 - Lx2A LINE L1 -1102 5906 5783 5 1286 2619 83 6 14 chr4 91944172 91944537 -63685583 - L1Md_F2 LINE L1 0 6582 6221 5 1286 900 81 0 0 chr4 91944539 91944662 -63685458 + B1_Mus1 SINE Alu 5 127 -21 5 1286 4502 177 2 2 chr4 91944685 91945496 -63684624 - Lx2A LINE L1 -86 5797 4987 5 1286 6472 188 75 30 chr4 91945492 91947352 -63682768 - Lx LINE L1 0 6654 4686 5 1286 2433 107 42 15 chr4 91947355 91947755 -63682365 - IAPLTR2a LTR ERVK 0 411 1 5 1286 6048 42 3 19 chr4 91947757 91948513 -63681607 - IAPEz-int LTR ERVK -2 6479 5736 5 1286 2270 54 0 0 chr4 91948512 91948790 -63681330 - IAPEz-int LTR ERVK -4845 1636 1359 5 1286 3693 54 26 20 chr4 91948790 91949282 -63680838 - IAPEz-int LTR ERVK -5819 662 168 5 1286 232 250 0 0 chr4 91949282 91949326 -63680794 - RLTR27 LTR ERVK -34 275 232 5 1286 1089 112 0 105 chr4 91949335 91949544 -63680576 - IAPEz-int LTR ERVK -6286 195 9 5 1286 2415 107 45 15 chr4 91949545 91949944 -63680176 - IAPLTR2a LTR ERVK 0 411 1 5 1286 12863 184 54 19 chr4 91949944 91952804 -63677316 - Lx LINE L1 -1195 4691 1733 5 1286 639 39 0 0 chr4 91952812 91952890 -63677230 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1286 745 347 24 4 chr4 91953016 91953481 -63676639 - Lx5 LINE L1 -584 6876 6180 5 1286 873 210 12 135 chr4 91953467 91953572 -63676548 + L1_Mur3 LINE L1 5019 5113 -767 5 1286 5417 156 7 7 chr4 91953572 91954492 -63675628 + Lx2 LINE L1 6077 6996 -1 5 1286 873 210 12 135 chr4 91954492 91954705 -63675415 + L1_Mur3 LINE L1 5114 5298 -582 5 1286 5119 191 54 117 chr4 91954735 91955630 -63674490 + Lx3A LINE L1 760 1701 -4185 5 1286 396 0 0 0 chr4 91955630 91955674 -63674446 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1286 5119 167 79 220 chr4 91955674 91955738 -63674382 + Lx3A LINE L1 1702 1765 -4121 5 1286 396 0 0 0 chr4 91955738 91955782 -63674338 + (CTA)n Simple_repeat Simple_repeat 1 44 0 5 1286 5119 167 79 220 chr4 91955782 91955816 -63674304 + Lx3A LINE L1 1766 1766 -4120 5 1286 804 79 8 16 chr4 91955816 91955944 -63674176 + (TTC)n Simple_repeat Simple_repeat 3 129 0 5 1286 1145 99 0 6 chr4 91955947 91956110 -63674010 - B2_Mm2 SINE B2 -30 165 4 5 1286 5119 167 79 220 chr4 91956110 91957448 -63672672 + Lx3A LINE L1 1769 2888 -2998 5 1286 1101 74 0 0 chr4 91957448 91957596 -63672524 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 5 1286 5119 167 79 220 chr4 91957596 91957839 -63672281 + Lx3A LINE L1 2889 3189 -2697 5 1286 6836 196 48 4 chr4 91957844 91959972 -63670148 + Lx3A LINE L1 4569 6805 -176 5 1286 314 164 11 102 chr4 91960072 91960160 -63669960 + L4 LINE RTE 1758 1837 -192 5 1286 451 117 3 14 chr4 91960315 91960398 -63669722 + L1_Mm LINE L1 2577 2663 -3223 5 1286 217 267 0 0 chr4 91960431 91960476 -63669644 + B3A SINE B2 1 45 -153 5 1286 202 324 26 26 chr4 91960494 91960570 -63669550 + (CATG)n Simple_repeat Simple_repeat 3 78 0 5 1286 21 82 0 0 chr4 91960794 91960843 -63669277 + AT_rich Low_complexity Low_complexity 1 49 0 5 1286 22 0 0 0 chr4 91961105 91961127 -63668993 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 251 319 55 34 chr4 91962093 91962239 -63667881 + MIR SINE MIR 114 262 0 5 1286 22 0 0 0 chr4 91962506 91962528 -63667592 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 1052 89 0 0 chr4 91963032 91963167 -63666953 + B1_Mus1 SINE Alu 2 136 -12 5 1286 378 0 0 0 chr4 91963167 91963209 -63666911 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 1286 386 325 69 40 chr4 91964105 91964409 -63665711 + L1M5 LINE L1 4355 4667 -1479 5 1286 1331 138 26 4 chr4 91965925 91966151 -63663969 + Lx3B LINE L1 5783 6013 -960 5 1286 30117 111 5 11 chr4 91966158 91968441 -63661679 + L1_Mus1 LINE L1 1152 3414 -2469 5 1286 1017 136 0 0 chr4 91968441 91968588 -63661532 - B1_Mus1 SINE Alu 0 148 2 5 1286 30117 104 7 8 chr4 91968588 91971737 -63658383 + L1_Mus1 LINE L1 3415 6566 -1 5 1286 180 0 0 0 chr4 91971750 91971770 -63658350 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1286 238 256 24 24 chr4 91972886 91972970 -63657150 - Lx8 LINE L1 -113 7360 7277 5 1286 21 57 0 0 chr4 91973879 91973914 -63656206 + AT_rich Low_complexity Low_complexity 1 35 0 5 1286 1921 313 42 20 chr4 91973953 91974700 -63655420 - Lx7 LINE L1 -361 7335 6573 5 1286 28 71 0 0 chr4 91974883 91974939 -63655181 + AT_rich Low_complexity Low_complexity 1 56 0 5 1286 1797 246 112 22 chr4 91975316 91975861 -63654259 - RMER19B LTR ERVK 0 902 309 5 1286 741 206 35 0 chr4 91975927 91976097 -63654023 + Lx9 LINE L1 7328 7503 -141 5 1286 7143 91 12 17 chr4 91976496 91978003 -63652117 + L1_Mus2 LINE L1 5067 6564 -2 5 1286 225 0 0 0 chr4 91978011 91978036 -63652084 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6 1286 504 307 42 104 chr4 91978095 91978404 -63651716 - B4A SINE B4 0 292 3 6 1286 513 0 0 0 chr4 91978544 91978601 -63651519 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1286 378 0 0 0 chr4 91978601 91978642 -63651478 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1286 409 345 69 43 chr4 91978659 91978892 -63651228 - B4A SINE B4 -23 269 31 6 1286 381 346 77 16 chr4 91982069 91982316 -63647804 - Lx9 LINE L1 -212 7432 7171 6 1286 348 83 0 0 chr4 91982400 91982448 -63647672 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1286 261 83 0 0 chr4 91982612 91982648 -63647472 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 6 1286 304 305 25 102 chr4 91982691 91982848 -63647272 + Lx9 LINE L1 6461 6605 -1039 6 1286 834 330 13 40 chr4 91982913 91983308 -63646812 + Lx9 LINE L1 6764 7147 -497 6 1286 198 0 0 0 chr4 91983323 91983345 -63646775 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1286 206 288 15 15 chr4 91983637 91983704 -63646416 - MIR3 SINE MIR -12 196 130 6 1286 920 211 25 10 chr4 91984111 91984307 -63645813 - MTC LTR MaLR 0 421 223 6 1286 780 11 0 0 chr4 91986061 91986150 -63643970 + (TTCCC)n Simple_repeat Simple_repeat 3 91 0 6 1286 9117 120 22 9 chr4 91986151 91988397 -63641723 - L1_Mus3 LINE L1 -6 6632 4360 6 1286 180 311 54 0 chr4 91988534 91988608 -63641512 + MIRm SINE MIR 71 148 -128 6 1286 351 154 0 0 chr4 91988853 91988918 -63641202 + T-rich Low_complexity Low_complexity 1 65 0 6 1286 213 214 0 0 chr4 91989492 91989534 -63640586 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1286 24 0 0 0 chr4 91989626 91989650 -63640470 + AT_rich Low_complexity Low_complexity 1 24 0 6 1286 1069 96 0 0 chr4 91989661 91989807 -63640313 + B1_Mm SINE Alu 2 147 0 6 1286 191 88 0 29 chr4 91989808 91989843 -63640277 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1286 221 146 21 0 chr4 91989935 91989983 -63640137 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1286 883 273 67 14 chr4 91991271 91991552 -63638568 + Lx6 LINE L1 7139 7396 -64 6 1286 210 158 0 0 chr4 91991552 91991590 -63638530 + A-rich Low_complexity Low_complexity 5 42 0 6 1286 1485 312 47 4 chr4 91991598 91992049 -63638071 - Lx6 LINE L1 -59 7401 6932 6 1286 2551 247 53 3 chr4 91992045 91992667 -63637453 - Lx6 LINE L1 -707 6753 6101 6 1286 351 172 52 103 chr4 91992721 91992818 -63637302 - HAL1-3A_ME LINE L1 -791 2067 1976 6 1286 316 278 241 0 chr4 91992825 91992958 -63637162 - B3 SINE B2 -13 203 39 6 1286 4708 61 2 0 chr4 91993029 91993618 -63636502 - L1Md_F2 LINE L1 -12 6570 5981 6 1286 4784 45 2 0 chr4 91993618 91994270 -63635850 + L1Md_F2 LINE L1 5297 5949 -633 6 1286 486 0 0 0 chr4 91995389 91995443 -63634677 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1286 23 68 0 0 chr4 91996014 91996058 -63634062 + AT_rich Low_complexity Low_complexity 1 44 0 6 1286 351 78 0 0 chr4 91996312 91996363 -63633757 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1286 1057 98 0 0 chr4 91996368 91996511 -63633609 - B1_Mm SINE Alu -4 143 1 6 1286 21 36 0 0 chr4 91996538 91996566 -63633554 + AT_rich Low_complexity Low_complexity 1 28 0 6 1286 648 38 0 0 chr4 91996669 91996748 -63633372 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 6 1286 3703 83 2 8 chr4 91997287 91997797 -63632323 - L1Md_F2 LINE L1 0 6582 6076 6 1286 23 33 0 0 chr4 91999156 91999186 -63630934 + AT_rich Low_complexity Low_complexity 1 30 0 6 1286 2411 107 62 30 chr4 91999446 91999879 -63630241 - L1_Mus4 LINE L1 -1 6635 6189 6 1286 596 355 22 0 chr4 92000015 92000198 -63629922 - B3 SINE B2 -22 194 8 1 1286 314 227 26 84 chr4 92000243 92000397 -63629723 - Lx9 LINE L1 -8 7636 7492 2 1286 221 385 40 66 chr4 92000756 92000984 -63629136 + B4A SINE B4 6 227 -65 3 1286 265 394 30 18 chr4 92000997 92001165 -63628955 + B4A SINE B4 58 227 -65 4 1286 1954 111 4 0 chr4 92001187 92001466 -63628654 - L1_Mm LINE L1 -235 5648 5369 5 1286 7221 149 13 13 chr4 92001463 92002720 -63627400 - L1_Mm LINE L1 -835 5048 3792 5 1286 3010 109 0 0 chr4 92002702 92003132 -63626988 + L1_Mus4 LINE L1 5662 6091 -545 6 1286 429 253 11 0 chr4 92003248 92003335 -63626785 - B3 SINE B2 -92 124 37 7 1286 12572 19 1 3 chr4 92003386 92004862 -63625258 + L1Md_A LINE L1 4114 5586 -297 8 1286 8511 29 0 0 chr4 92004862 92005858 -63624262 + L1Md_A LINE L1 5587 6582 0 8 1286 26 30 0 0 chr4 92006732 92006765 -63623355 + AT_rich Low_complexity Low_complexity 1 33 0 9 1286 469 297 69 0 chr4 92007456 92007601 -63622519 - ID_B1 SINE B4 -68 156 2 1 1286 422 318 54 0 chr4 92007688 92007836 -63622284 + RSINE1 SINE B4 4 159 -6 1 1286 23 0 0 0 chr4 92009029 92009052 -63621068 + AT_rich Low_complexity Low_complexity 1 23 0 1 1286 267 79 0 0 chr4 92009813 92009851 -63620269 + (CAAAG)n Simple_repeat Simple_repeat 2 39 0 1 1286 23 0 0 0 chr4 92009893 92009916 -63620204 + AT_rich Low_complexity Low_complexity 1 23 0 1 1286 2690 134 18 33 chr4 92009924 92010319 -63619801 - Lx3_Mus LINE L1 -8 7001 6613 1 1286 4068 110 9 131 chr4 92010319 92011174 -63618946 - RMER17A LTR ERVK 0 751 1 1 1286 2690 134 18 33 chr4 92011174 92011234 -63618886 - Lx3_Mus LINE L1 -397 6612 6553 1 1286 2041 125 0 7 chr4 92011234 92011532 -63618588 + Lx3_Mus LINE L1 6249 6544 -465 1 1286 720 248 57 9 chr4 92012066 92012294 -63617826 + Lx9 LINE L1 6805 7043 -601 1 1286 408 214 103 56 chr4 92012296 92012415 -63617705 + Lx9 LINE L1 7401 7518 -126 1 1286 363 60 0 0 chr4 92012415 92012465 -63617655 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 160 408 214 103 56 chr4 92012465 92012578 -63617542 + Lx9 LINE L1 7519 7644 0 1 1287 2486 217 32 2 chr4 92012678 92013236 -63616884 + RMER15 LTR ERVL 1 575 0 1 1287 24 0 0 0 chr4 92013300 92013324 -63616796 + AT_rich Low_complexity Low_complexity 1 24 0 2 1287 914 302 43 47 chr4 92013559 92014049 -63616071 - Lx9 LINE L1 -504 7140 6653 2 1287 564 56 0 0 chr4 92014334 92014406 -63615714 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1287 237 167 29 57 chr4 92014432 92014502 -63615618 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 2 1287 481 320 109 11 chr4 92014596 92014838 -63615282 + MTEa LTR MaLR 3 265 -114 2 1287 26 0 0 0 chr4 92015014 92015040 -63615080 + AT_rich Low_complexity Low_complexity 1 26 0 2 1287 5473 121 23 5 chr4 92015363 92016228 -63613892 + Lx3A LINE L1 6098 6978 -3 2 1287 204 304 0 0 chr4 92017058 92017114 -63613006 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2 1287 24 32 0 0 chr4 92018431 92018462 -63611658 + AT_rich Low_complexity Low_complexity 1 31 0 2 1287 541 267 20 14 chr4 92018650 92018798 -63611322 - B1_Mur2 SINE Alu 0 149 1 2 1287 504 0 0 0 chr4 92018898 92018954 -63611166 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 3 1287 938 106 23 0 chr4 92018954 92019086 -63611034 - B1_Mus2 SINE Alu -12 135 1 3 1287 256 105 0 0 chr4 92020129 92020167 -63609953 + RMER17C LTR ERVK 1 38 -372 3 1287 794 164 13 145 chr4 92020178 92020197 -63609923 + RMER17C LTR ERVK 213 230 -180 3 1287 1215 102 0 0 chr4 92020197 92020374 -63609746 + (TTC)n Simple_repeat Simple_repeat 3 179 0 3 1287 370 48 31 31 chr4 92020374 92020438 -63609682 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1287 794 164 13 145 chr4 92020438 92020645 -63609475 + RMER17C LTR ERVK 231 409 -1 3 1287 320 131 333 18 chr4 92020982 92021090 -63609030 - B2_Mm2 SINE B2 -7 188 47 3 1287 989 161 29 0 chr4 92021137 92021311 -63608809 - B2_Mm1t SINE B2 -14 179 1 3 1287 209 176 39 0 chr4 92021841 92021892 -63608228 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1287 2876 21 27 0 chr4 92021982 92022319 -63607801 - ORR1A0 LTR MaLR 0 346 1 3 1287 189 0 0 0 chr4 92023174 92023195 -63606925 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1287 26 64 0 0 chr4 92023839 92023886 -63606234 + AT_rich Low_complexity Low_complexity 1 47 0 4 1287 1582 92 5 0 chr4 92024493 92024711 -63605409 - L1_Mus2 LINE L1 -1 6565 6347 4 1287 4592 156 44 46 chr4 92024740 92025700 -63604420 + RMER17B LTR ERVK 1 958 0 4 1287 483 123 0 0 chr4 92026500 92026581 -63603539 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 4 1287 331 373 54 50 chr4 92026611 92026851 -63603269 - Lx8 LINE L1 -725 6748 6509 4 1287 1778 214 19 3 chr4 92026851 92027212 -63602908 + ORR1B2 LTR MaLR 1 367 0 4 1287 331 373 54 50 chr4 92027212 92027248 -63602872 - Lx8 LINE L1 -965 6508 6471 4 1287 484 227 0 0 chr4 92027763 92027860 -63602260 + Lx9 LINE L1 6748 6844 -800 4 1287 2790 120 9 25 chr4 92027851 92028295 -63601825 + L1_Mus4 LINE L1 5704 6140 -496 4 1287 25 0 0 0 chr4 92028396 92028421 -63601699 + AT_rich Low_complexity Low_complexity 1 25 0 4 1287 1456 63 11 0 chr4 92029315 92029504 -63600616 + B2_Mm1t SINE B2 2 192 -1 4 1287 202 62 62 0 chr4 92029586 92029618 -63600502 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 5 1287 1134 82 0 0 chr4 92029618 92029764 -63600356 - B1_Mus2 SINE Alu 0 147 2 5 1287 340 323 0 16 chr4 92030945 92031074 -63599046 - Lx9 LINE L1 -235 7409 7283 5 1287 765 181 0 0 chr4 92031158 92031335 -63598785 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1287 523 121 84 0 chr4 92031361 92031444 -63598676 + RMER6C LTR ERVK 3 92 -598 5 1287 1573 185 60 21 chr4 92031455 92031786 -63598334 + RMER6C LTR ERVK 347 690 0 5 1287 325 256 36 24 chr4 92031985 92031997 -63598123 + Lx2A1 LINE L1 5942 5955 -1053 5 1287 2212 110 17 20 chr4 92031997 92032349 -63597771 - L1_Mus4 LINE L1 0 6636 6286 5 1287 1140 104 6 0 chr4 92032349 92032513 -63597607 + L1_Mus4 LINE L1 5956 6120 -516 5 1287 607 335 39 0 chr4 92032543 92032725 -63597395 + B3 SINE B2 5 193 -23 5 1287 180 111 0 0 chr4 92032726 92032753 -63597367 + (TAA)n Simple_repeat Simple_repeat 3 29 0 5 1287 26 30 0 0 chr4 92033372 92033405 -63596715 + AT_rich Low_complexity Low_complexity 1 33 0 5 1287 4615 253 27 50 chr4 92034014 92034246 -63595874 - Lx3C LINE L1 -4 6996 6753 6 1287 414 0 0 0 chr4 92034246 92034292 -63595828 + (CTG)n Simple_repeat Simple_repeat 1 46 0 6 1287 4615 253 27 50 chr4 92034292 92034339 -63595781 - Lx3C LINE L1 -248 6752 6723 6 1287 528 16 0 0 chr4 92034339 92034400 -63595720 + (TAG)n Simple_repeat Simple_repeat 3 63 0 6 1287 7199 139 11 11 chr4 92034400 92035819 -63594301 - Lx3C LINE L1 -250 6726 5334 6 1287 24 0 0 0 chr4 92036496 92036520 -63593600 + AT_rich Low_complexity Low_complexity 1 24 0 6 1287 24 53 0 0 chr4 92037335 92037373 -63592747 + AT_rich Low_complexity Low_complexity 1 38 0 6 1287 36 82 0 0 chr4 92037413 92037498 -63592622 + AT_rich Low_complexity Low_complexity 1 85 0 6 1287 4171 206 30 34 chr4 92037742 92038866 -63591254 - Lx4B LINE L1 -429 6629 5498 6 1287 1368 232 92 11 chr4 92038874 92039232 -63590888 + Lx2B LINE L1 6611 6997 -3 6 1287 22 56 0 0 chr4 92039232 92039268 -63590852 + AT_rich Low_complexity Low_complexity 1 36 0 6 1287 2256 122 22 6 chr4 92040232 92040596 -63589524 - Lx2 LINE L1 -1 6996 6627 6 1287 643 206 14 14 chr4 92040952 92041100 -63589020 - B1_Mur1 SINE Alu -1 148 1 7 1287 1772 352 71 18 chr4 92041753 92042864 -63587256 + RMER15-int LTR ERVL 369 1538 -3461 7 1287 766 304 37 11 chr4 92043035 92043304 -63586816 + RMER15-int LTR ERVL 2208 2483 -2516 7 1287 29 0 0 0 chr4 92043367 92043396 -63586724 + AT_rich Low_complexity Low_complexity 1 29 0 7 1287 1294 208 7 32 chr4 92043405 92043713 -63586407 + L1_Mur3 LINE L1 2581 2880 -3000 7 1287 276 170 0 0 chr4 92043727 92043774 -63586346 - MER92C LTR ERV1 -2 552 506 7 1287 295 256 12 25 chr4 92043974 92044054 -63586066 - MER92C LTR ERV1 -475 79 1 7 1287 22 0 0 0 chr4 92044283 92044305 -63585815 + AT_rich Low_complexity Low_complexity 1 22 0 7 1287 381 298 26 9 chr4 92045381 92045496 -63584624 - MLT1C LTR MaLR -292 175 59 7 1287 612 321 43 15 chr4 92045689 92045951 -63584169 - B4A SINE B4 -4 288 15 7 1287 314 141 30 30 chr4 92046314 92046380 -63583740 - RMER17C LTR ERVK -114 296 231 7 1287 825 11 0 0 chr4 92046382 92046476 -63583644 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 1287 799 312 66 50 chr4 92047941 92048141 -63581979 - MLT1C LTR MaLR 0 467 257 8 1287 201 74 0 0 chr4 92048141 92048168 -63581952 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1287 799 312 66 50 chr4 92048168 92048345 -63581775 - MLT1C LTR MaLR -211 256 85 8 1287 834 110 29 6 chr4 92048424 92048598 -63581522 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 8 1287 627 218 76 41 chr4 92048623 92048795 -63581325 - Lx5 LINE L1 -12 7038 6861 8 1287 1159 175 18 31 chr4 92048915 92049139 -63580981 - Lx5 LINE L1 -197 6853 6633 8 1287 22 0 0 0 chr4 92049543 92049565 -63580555 + AT_rich Low_complexity Low_complexity 1 22 0 8 1287 203 380 88 0 chr4 92049756 92049893 -63580227 + L2a LINE L2 3011 3159 -267 8 1287 183 80 0 0 chr4 92049983 92050008 -63580112 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1287 2532 72 17 6 chr4 92050158 92050509 -63579611 - L1Md_F2 LINE L1 -4 6578 6224 8 1287 406 99 0 0 chr4 92050515 92050578 -63579542 - L1_Mm LINE L1 -571 5607 5534 8 1287 1427 284 51 8 chr4 92051887 92052360 -63577760 - RLTR16 LTR ERVK -12 493 1 8 1287 416 163 0 165 chr4 92052360 92052434 -63577686 + MT2B LTR ERVL 203 259 -342 9 1287 232 217 0 0 chr4 92052434 92052480 -63577640 + B1F2 SINE Alu 3 48 -101 9 1287 1596 191 16 69 chr4 92052509 92052886 -63577234 + RLTR8 LTR ERVK 1 357 -8 9 1287 1146 186 96 25 chr4 92052931 92053212 -63576908 + RMER6A LTR ERVK 340 640 -116 9 1287 2067 74 0 7 chr4 92053214 92053498 -63576622 + L1Md_F2 LINE L1 6298 6579 -3 9 1287 3962 246 63 38 chr4 92054199 92055330 -63574790 + Lx9 LINE L1 6308 7466 -178 9 1287 345 82 0 0 chr4 92055512 92055561 -63574559 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1287 22 35 0 0 chr4 92056012 92056041 -63574079 + AT_rich Low_complexity Low_complexity 1 29 0 9 1287 207 69 0 0 chr4 92056063 92056092 -63574028 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1287 194 383 77 16 chr4 92056147 92056330 -63573790 + MIRb SINE MIR 11 204 -64 9 1287 225 0 0 0 chr4 92056887 92056912 -63573208 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1287 2745 96 7 0 chr4 92057129 92057544 -63572576 - MusHAL1 LINE L1 -2074 638 221 1 1287 6352 137 37 9 chr4 92057548 92058660 -63571460 + Lx2 LINE L1 5492 6631 -366 1 1287 1357 134 9 5 chr4 92058660 92058884 -63571236 + Lx2 LINE L1 6770 6994 -3 1 1287 192 217 0 0 chr4 92058939 92058985 -63571135 + CT-rich Low_complexity Low_complexity 3 48 0 1 1287 1169 62 0 0 chr4 92059264 92059410 -63570710 + B1_Mus2 SINE Alu 2 147 0 1 1287 222 246 0 0 chr4 92059467 92059528 -63570592 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 1 1287 489 62 0 0 chr4 92059550 92059615 -63570505 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1287 2205 259 36 46 chr4 92059622 92060258 -63569862 - Lx6 LINE L1 -583 6877 6248 1 1287 286 314 14 0 chr4 92060294 92060364 -63569756 + RSINE1 SINE B4 70 140 -25 1 1287 237 287 63 27 chr4 92061862 92061973 -63568147 + MLT1A1 LTR MaLR 294 408 0 1 1287 483 33 0 0 chr4 92062070 92062131 -63567989 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 1 1287 265 312 84 42 chr4 92064148 92064315 -63565805 + L4 LINE RTE 729 902 -1127 1 1287 25 31 0 0 chr4 92066891 92066923 -63563197 + AT_rich Low_complexity Low_complexity 1 32 0 1 1287 1858 137 21 57 chr4 92067413 92067747 -63562373 + ORR1A2 LTR MaLR 1 322 -5 1 1287 740 328 38 35 chr4 92068246 92068559 -63561561 - RMER15 LTR ERVL -16 559 246 1 1287 216 0 0 0 chr4 92068582 92068606 -63561514 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1287 5118 61 0 3 chr4 92068608 92068629 -63561491 - L1Md_F2 LINE L1 -1 6581 6562 1 1287 462 49 0 0 chr4 92068629 92068690 -63561430 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1287 5118 61 0 3 chr4 92068690 92069313 -63560807 - L1Md_F2 LINE L1 -21 6561 5939 1 1287 1712 87 0 4 chr4 92069313 92069566 -63560554 + L1_Mm LINE L1 1274 1525 -4358 1 1287 371 324 92 46 chr4 92069713 92069865 -63560255 + ID_B1 SINE B4 12 170 -54 1 1287 5187 102 3 21 chr4 92069961 92070738 -63559382 + L1Md_F LINE L1 263 1025 -5494 1 1287 36976 23 3 7 chr4 92070736 92075929 -63554191 + L1Md_A LINE L1 419 5586 -297 1 1287 8382 36 0 0 chr4 92075929 92076925 -63553195 + L1Md_A LINE L1 5587 6582 0 1 1287 32072 78 1 5 chr4 92076925 92081436 -63548684 + L1Md_F2 LINE L1 999 5589 -297 1 1287 7589 63 3 1 chr4 92081437 92082417 -63547703 + L1Md_F2 LINE L1 5591 6572 -13 1 1287 22 70 0 0 chr4 92082420 92082463 -63547657 + AT_rich Low_complexity Low_complexity 1 43 0 1 1287 3454 23 2 0 chr4 92082468 92082863 -63547257 - MTA_Mm LTR MaLR 0 396 1 1 1287 271 250 8 24 chr4 92083649 92083776 -63546344 + GA-rich Low_complexity Low_complexity 2 126 0 1 1287 194 62 31 0 chr4 92084011 92084043 -63546077 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1287 26 0 0 0 chr4 92084671 92084697 -63545423 + AT_rich Low_complexity Low_complexity 1 26 0 1 1287 342 0 0 0 chr4 92087181 92087219 -63542901 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1287 2798 261 82 76 chr4 92088915 92089317 -63540803 + Lx3_Mus LINE L1 26 706 -6278 1 1287 2835 44 32 0 chr4 92089317 92089660 -63540460 - IAPEY2_LTR LTR ERVK -3 354 1 1 1287 15266 118 39 15 chr4 92089660 92092034 -63538086 + Lx3_Mus LINE L1 707 3134 -2752 1 1287 300 27 0 0 chr4 92092034 92092071 -63538049 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1287 15266 115 13 9 chr4 92092071 92092634 -63537486 + Lx3_Mus LINE L1 3135 3716 -2170 1 1287 26140 160 29 7 chr4 92092659 92095030 -63535090 + L1_Mus3 LINE L1 693 3131 -2752 1 1287 296 64 21 0 chr4 92095030 92095077 -63535043 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1287 26140 134 17 3 chr4 92095077 92098544 -63531576 + L1_Mus3 LINE L1 3132 6638 0 1 1287 13805 119 27 5 chr4 92098576 92101828 -63528292 + Lx3_Mus LINE L1 3695 7009 0 1 1287 439 267 145 40 chr4 92101953 92102105 -63528015 + B4 SINE B4 124 291 -1 1 1287 207 167 0 0 chr4 92102125 92102167 -63527953 + (CCA)n Simple_repeat Simple_repeat 3 44 0 1 1287 5530 107 0 1 chr4 92102199 92103071 -63527049 - L1_Mm LINE L1 -3801 2082 1212 1 1287 3478 69 19 4 chr4 92103071 92103535 -63526585 + L1_Mus2 LINE L1 6095 6565 -1 1 1287 198 174 0 0 chr4 92103743 92103789 -63526331 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1287 200 273 0 0 chr4 92104567 92104611 -63525509 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1287 256 165 0 13 chr4 92104656 92104719 -63525401 - MT2A LTR ERVL 0 567 484 1 1287 426 218 29 29 chr4 92104737 92104912 -63525208 + (TA)n Simple_repeat Simple_repeat 1 175 0 1 1287 21 0 0 0 chr4 92104927 92104948 -63525172 + AT_rich Low_complexity Low_complexity 1 21 0 1 1287 692 43 11 0 chr4 92104954 92105046 -63525074 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 1 1287 924 263 82 55 chr4 92105046 92105441 -63524679 - MT2A LTR ERVL -55 546 1 1 1287 275 222 13 40 chr4 92105497 92105572 -63524548 - ORR1A3-int LTR MaLR -1324 639 567 1 1287 4698 225 39 8 chr4 92105572 92106701 -63523419 - MERVL_2A-int LTR ERVL -133 5628 4465 1 1287 23 54 0 0 chr4 92106956 92106993 -63523127 + AT_rich Low_complexity Low_complexity 1 37 0 1 1287 1279 317 86 29 chr4 92107073 92107876 -63522244 - Lx9 LINE L1 -151 7493 6645 1 1287 633 250 49 51 chr4 92107875 92108214 -63521906 - L1_Rod LINE L1 -580 5603 5203 1 1287 941 40 8 0 chr4 92108224 92108349 -63521771 - B1_Mm SINE Alu 0 147 22 1 1287 682 291 84 13 chr4 92108351 92108674 -63521446 - L1_Rod LINE L1 -591 5289 4909 1 1287 28 86 0 0 chr4 92110645 92110715 -63519405 + AT_rich Low_complexity Low_complexity 1 70 0 1 1287 773 246 141 0 chr4 92111286 92111345 -63518775 - Lx9 LINE L1 -142 7502 7438 1 1287 438 20 0 0 chr4 92111345 92111396 -63518724 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1287 773 246 141 0 chr4 92111396 92111592 -63518528 - Lx9 LINE L1 -207 7437 7213 1 1287 1533 183 99 17 chr4 92112164 92112526 -63517594 - RMER6C LTR ERVK 0 690 299 1 1287 681 57 124 0 chr4 92112580 92112685 -63517435 - B1_Mm SINE Alu 0 147 30 1 1287 257 163 0 39 chr4 92112688 92112739 -63517381 - RMER6C LTR ERVK -381 339 291 1 1287 252 143 0 0 chr4 92112743 92112785 -63517335 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1287 522 221 94 8 chr4 92112786 92112914 -63517206 - RLTR25B LTR ERVK -889 139 1 1 1287 3202 196 57 40 chr4 92113100 92113802 -63516318 + RMER6D LTR ERVK 1 714 -6 1 1287 25 51 0 0 chr4 92113976 92114015 -63516105 + AT_rich Low_complexity Low_complexity 1 39 0 1 1287 305 352 101 17 chr4 92114793 92115030 -63515090 + L1MC LINE L1 5426 5682 -662 1 1287 29 28 0 0 chr4 92115321 92115357 -63514763 + AT_rich Low_complexity Low_complexity 1 36 0 1 1287 900 102 7 45 chr4 92116135 92116289 -63513831 + L1_Mus1 LINE L1 6420 6567 0 1 1287 204 185 18 18 chr4 92117698 92117753 -63512367 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1287 1692 264 25 38 chr4 92117939 92118411 -63511709 - RMER19C LTR ERVK -5 606 141 1 1287 408 254 70 0 chr4 92119542 92119656 -63510464 - Lx3C LINE L1 -287 6689 6568 1 1287 9440 180 43 4 chr4 92119658 92121776 -63508344 - L1_Mur2 LINE L1 -2553 3333 1125 1 1287 353 60 0 0 chr4 92122267 92122338 -63507782 - L1_Mus1 LINE L1 0 6567 6509 1 1287 23 54 0 0 chr4 92122742 92122779 -63507341 + AT_rich Low_complexity Low_complexity 1 37 0 1 1287 230 73 0 24 chr4 92123356 92123398 -63506722 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1287 1103 78 0 0 chr4 92124022 92124163 -63505957 + B1_Mm SINE Alu 1 141 -6 1 1287 207 0 0 0 chr4 92124163 92124186 -63505934 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1287 38 68 0 0 chr4 92124238 92124311 -63505809 + AT_rich Low_complexity Low_complexity 1 73 0 1 1287 4498 175 28 15 chr4 92124599 92125464 -63504656 - Lx2 LINE L1 -1 6996 6121 1 1287 332 204 117 0 chr4 92125468 92125571 -63504549 + Lx2 LINE L1 5985 6099 -898 1 1287 228 182 0 0 chr4 92125729 92125773 -63504347 + CT-rich Low_complexity Low_complexity 2 45 0 1 1287 920 244 79 25 chr4 92125796 92126112 -63504008 - Lx7 LINE L1 0 7696 7364 1 1287 2286 243 55 26 chr4 92126167 92126722 -63503398 - L1_Mur3 LINE L1 -6397 1315 732 1 1287 195 69 0 0 chr4 92126722 92126751 -63503369 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1287 2286 243 55 26 chr4 92126751 92126922 -63503198 - L1_Mur3 LINE L1 -6981 731 568 1 1287 283 246 122 8 chr4 92127006 92127129 -63502991 - L1_Mur3 LINE L1 -7345 367 231 1 1287 455 200 202 14 chr4 92128149 92128372 -63501748 - Lx9 LINE L1 -7 7637 7373 1 1287 24 0 0 0 chr4 92128436 92128460 -63501660 + AT_rich Low_complexity Low_complexity 1 24 0 1 1287 504 0 0 0 chr4 92129014 92129070 -63501050 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 1287 307 289 41 0 chr4 92129199 92129296 -63500824 - Lx8 LINE L1 -451 7022 6922 1 1287 328 344 59 32 chr4 92129336 92129522 -63500598 - L1MCa LINE L1 -992 5329 5139 1 1287 312 308 41 0 chr4 92129816 92129985 -63500135 - L1MCa LINE L1 -1462 4859 4684 1 1287 720 241 15 30 chr4 92130046 92130243 -63499877 - B2_Mm2 SINE B2 -1 194 1 1 1287 937 305 66 28 chr4 92130280 92131013 -63499107 - L1MCa LINE L1 -3044 3277 2497 1 1287 316 294 125 27 chr4 92131102 92131469 -63498651 - L1MCa LINE L1 -4161 2347 1945 1 1287 528 16 0 0 chr4 92131584 92131645 -63498475 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 1 1287 435 363 64 36 chr4 92131770 92132301 -63497819 - L1MCa LINE L1 -5866 642 97 1 1287 1115 55 14 0 chr4 92132642 92132787 -63497333 + B1_Mm SINE Alu 1 147 0 1 1287 913 75 0 95 chr4 92133983 92134131 -63495989 + B1_Mm SINE Alu 2 135 -12 1 1287 603 62 0 0 chr4 92134131 92134211 -63495909 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1287 4550 216 48 12 chr4 92134256 92135286 -63494834 - Lx2B LINE L1 -1 6999 5933 1 1287 319 336 67 31 chr4 92135429 92135765 -63494355 - MLT2B1 LTR ERVL -65 491 20 1 1287 428 181 102 48 chr4 92135974 92136160 -63493960 + RMER17C LTR ERVK 80 275 -135 1 1287 35 63 0 0 chr4 92136188 92136251 -63493869 + AT_rich Low_complexity Low_complexity 1 63 0 1 1287 22 0 0 0 chr4 92136430 92136452 -63493668 + AT_rich Low_complexity Low_complexity 1 22 0 1 1287 243 0 0 0 chr4 92137154 92137181 -63492939 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1287 4039 144 66 13 chr4 92137268 92138252 -63491868 + L1_Mur1 LINE L1 519 1501 -4385 1 1287 5583 153 4 35 chr4 92138241 92139247 -63490873 + Lx LINE L1 5680 6654 0 1 1287 30 0 0 0 chr4 92139269 92139299 -63490821 + AT_rich Low_complexity Low_complexity 1 30 0 1 1287 5454 165 77 3 chr4 92139757 92141271 -63488849 + L1_Mur1 LINE L1 2206 3958 -1922 1 1287 870 136 0 0 chr4 92141268 92141400 -63488720 + L1_Mur1 LINE L1 5490 5621 -265 1 1287 2890 126 2 13 chr4 92141406 92141863 -63488257 + Lx3A LINE L1 6066 6517 -464 1 1287 3768 53 0 4 chr4 92141863 92142322 -63487798 + L1Md_F3 LINE L1 6096 6553 -31 2 1287 461 17 17 0 chr4 92142322 92142380 -63487740 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1287 3768 53 0 4 chr4 92142380 92142396 -63487724 + L1Md_F3 LINE L1 6554 6569 -15 2 1287 2698 132 51 16 chr4 92142391 92142844 -63487276 + Lx3A LINE L1 6504 6972 -9 1 1287 982 269 84 27 chr4 92142976 92143428 -63486692 + Lx9 LINE L1 5447 5940 -1704 2 160 1817 256 27 34 chr4 92143498 92144084 -63486036 + Lx9 LINE L1 7062 7643 -1 2 1288 618 278 64 0 chr4 92144098 92144332 -63485788 - RCHARR1 DNA MER1_type -88 886 638 2 1288 212 253 13 26 chr4 92144743 92144820 -63485300 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1288 414 0 0 0 chr4 92144842 92144888 -63485232 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1288 208 226 32 0 chr4 92146555 92146617 -63483503 + T-rich Low_complexity Low_complexity 1 64 0 2 1288 2252 197 74 46 chr4 92147104 92147673 -63482447 + RMER4B LTR ERVK 1 585 0 2 1288 1710 221 138 30 chr4 92147783 92148200 -63481920 + RLTR20B3 LTR ERVK 1 473 -104 2 1288 627 51 0 0 chr4 92148200 92148279 -63481841 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 1288 1710 221 138 30 chr4 92148279 92148369 -63481751 + RLTR20B3 LTR ERVK 474 562 -15 2 1288 291 224 0 0 chr4 92148636 92148712 -63481408 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1288 431 339 22 82 chr4 92148728 92148911 -63481209 - B4 SINE B4 -96 196 25 2 1288 700 63 31 16 chr4 92149318 92149447 -63480673 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 2 1288 23 33 0 0 chr4 92150153 92150183 -63479937 + AT_rich Low_complexity Low_complexity 1 30 0 2 1288 1605 208 24 49 chr4 92150679 92151129 -63478991 + RMER17B LTR ERVK 1 439 -519 2 1288 2144 238 72 28 chr4 92151139 92151754 -63478366 + RMER13B LTR ERVK 263 904 -4 2 1288 1710 183 12 60 chr4 92152240 92152572 -63477548 + ORR1A4 LTR MaLR 14 329 0 2 1288 489 366 17 40 chr4 92153050 92153346 -63476774 + B4A SINE B4 2 290 -2 2 1288 387 0 0 0 chr4 92153351 92153394 -63476726 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1288 1085 254 74 50 chr4 92153397 92153774 -63476346 + RLTR20C LTR ERVK 1 386 -148 2 1288 6619 69 17 2 chr4 92153774 92154639 -63475481 + L1_Mus1 LINE L1 5696 6654 0 2 1288 274 217 0 16 chr4 92154653 92154699 -63475421 + RLTR20C LTR ERVK 393 438 -103 2 1288 366 23 0 0 chr4 92154699 92154742 -63475378 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1288 274 217 0 16 chr4 92154742 92154756 -63475364 + RLTR20C LTR ERVK 439 452 -89 2 1288 22 0 0 0 chr4 92154884 92154906 -63475214 + AT_rich Low_complexity Low_complexity 1 22 0 2 1288 1082 278 98 3 chr4 92155876 92156204 -63473916 - MTD LTR MaLR 0 419 61 2 1288 6846 165 24 12 chr4 92156950 92158309 -63471811 - Lx2 LINE L1 -256 6741 5528 2 1288 1151 244 75 22 chr4 92158332 92158651 -63471469 + RMER5 LTR ERV1 1 336 -198 2 1288 391 312 27 54 chr4 92158650 92158836 -63471284 + RLTR15 LTR ERVK 48 228 -131 2 1288 268 161 68 51 chr4 92158976 92159035 -63471085 + RMER5 LTR ERV1 468 527 -7 2 1288 1800 216 52 90 chr4 92159025 92159559 -63470561 + RLTR20B3 LTR ERVK 6 519 -58 2 1288 207 0 0 0 chr4 92159908 92159931 -63470189 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1288 499 281 36 52 chr4 92160595 92160829 -63469291 - RLTR15 LTR ERVK -17 342 112 2 1288 441 36 0 0 chr4 92160829 92160884 -63469236 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 1288 499 281 36 52 chr4 92160884 92160897 -63469223 - RLTR15 LTR ERVK -248 111 99 2 1288 21 36 0 0 chr4 92162607 92162635 -63467485 + AT_rich Low_complexity Low_complexity 1 28 0 2 1288 252 250 0 0 chr4 92162793 92162841 -63467279 - MTEb LTR MaLR -326 53 6 2 1288 1909 47 0 0 chr4 92163744 92163978 -63466142 - L1Md_F2 LINE L1 -514 6068 5835 2 1288 3772 53 48 18 chr4 92163995 92164477 -63465643 + L1Md_F2 LINE L1 6066 6563 -19 2 1288 752 32 11 0 chr4 92164477 92164572 -63465548 + (GAA)n Simple_repeat Simple_repeat 2 97 0 2 1288 3772 53 48 18 chr4 92164572 92164590 -63465530 + L1Md_F2 LINE L1 6564 6581 -1 2 1288 7304 49 0 0 chr4 92164897 92165795 -63464325 + L1Md_F2 LINE L1 5685 6582 0 2 1288 21 36 0 0 chr4 92165849 92165877 -63464243 + AT_rich Low_complexity Low_complexity 1 28 0 2 1288 533 256 17 0 chr4 92166798 92166915 -63463205 + RMER20B LTR ERVK 1 119 -508 2 1288 652 265 104 5 chr4 92167066 92167267 -63462853 + RMER20B LTR ERVK 172 392 -235 2 1288 621 0 0 0 chr4 92167683 92167752 -63462368 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1288 22 88 0 0 chr4 92168689 92168746 -63461374 + AT_rich Low_complexity Low_complexity 1 57 0 2 1288 877 308 70 42 chr4 92168767 92169126 -63460994 - Lx5 LINE L1 -36 7014 6646 2 1288 477 354 112 24 chr4 92169244 92169574 -63460546 + L4 LINE RTE 1536 1894 -135 2 1288 706 299 50 0 chr4 92170321 92170522 -63459598 + B3 SINE B2 6 216 0 2 1288 16000 121 9 4 chr4 92170675 92173811 -63456309 - L1_Mus3 LINE L1 -5 6633 3486 2 1288 330 26 0 0 chr4 92173811 92173850 -63456270 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 1288 16000 139 9 3 chr4 92173850 92174095 -63456025 - L1_Mus3 LINE L1 -2398 3485 3233 2 1288 38371 6 0 0 chr4 92174096 92179393 -63450727 + L1Md_A LINE L1 289 5586 -297 2 1288 8938 7 0 0 chr4 92179393 92180389 -63449731 + L1Md_A LINE L1 5587 6582 0 2 1288 9575 160 74 8 chr4 92180389 92182655 -63447465 - L1_Mus3 LINE L1 -2637 3246 836 2 1288 4478 67 3 47 chr4 92182655 92183280 -63446840 + L1Md_F2 LINE L1 5973 6582 0 2 1288 4273 181 52 33 chr4 92183280 92183713 -63446407 - L1_Mus3 LINE L1 -5799 835 386 2 1288 403 158 16 0 chr4 92185009 92185136 -63444984 + (TA)n Simple_repeat Simple_repeat 2 130 0 2 1288 259 242 30 0 chr4 92185363 92185429 -63444691 - Lx7 LINE L1 -852 6844 6777 2 1288 1627 163 21 0 chr4 92185439 92185727 -63444393 - L1_Mm LINE L1 -79 5804 5511 2 1288 16467 159 72 9 chr4 92185833 92190230 -63439890 - L1_Mur1 LINE L1 -11 5875 757 2 1288 3163 55 3 0 chr4 92190230 92190614 -63439506 + IAPEY_LTR LTR ERVK 1 385 0 2 1288 5805 182 98 14 chr4 92190614 92191280 -63438840 - L1_Mur1 LINE L1 -6228 756 3 2 1288 558 308 131 45 chr4 92191571 92191884 -63438236 - MLT-int LTR MaLR -9 1726 1387 2 1288 1165 56 7 0 chr4 92192574 92192718 -63437402 + B1_Mm SINE Alu 1 145 -2 2 1288 309 26 0 0 chr4 92192732 92192770 -63437350 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1288 1504 178 25 3 chr4 92192811 92193093 -63437027 + Lx LINE L1 6359 6646 -8 2 1288 35 0 0 0 chr4 92193251 92193286 -63436834 + AT_rich Low_complexity Low_complexity 1 35 0 2 1288 250 329 0 0 chr4 92193790 92193875 -63436245 + GA-rich Low_complexity Low_complexity 3 87 0 2 1288 944 235 176 65 chr4 92196850 92197191 -63432929 + RLTR30 LTR ERV1 1 379 0 2 1288 491 377 44 4 chr4 92197194 92197468 -63432652 - Lx8 LINE L1 -292 7181 6897 2 1288 689 243 99 66 chr4 92197640 92198032 -63432088 - RLTR11B LTR ERVK -27 414 7 2 1288 827 223 151 47 chr4 92198040 92198463 -63431657 - L1_Rod LINE L1 -3892 1955 1489 2 1288 534 283 121 32 chr4 92198461 92198775 -63431345 - L1_Rod LINE L1 -6368 1240 899 2 1288 34374 75 2 29 chr4 92198784 92205644 -63424476 - L1Md_F2 LINE L1 0 6585 101 2 1288 302 152 0 0 chr4 92205622 92205668 -63424452 - L1Md_F2 LINE L1 -6392 227 182 2 1288 342 0 0 0 chr4 92206438 92206476 -63423644 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1288 282 160 0 0 chr4 92206483 92206533 -63423587 + CT-rich Low_complexity Low_complexity 1 50 0 2 1288 351 0 0 0 chr4 92206544 92206583 -63423537 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1288 323 288 27 67 chr4 92206749 92206898 -63423222 + Lx5 LINE L1 6890 7032 -18 2 1288 387 0 0 0 chr4 92207038 92207081 -63423039 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1288 588 81 0 0 chr4 92207081 92207167 -63422953 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1288 447 78 0 0 chr4 92207172 92207236 -63422884 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2 1288 601 301 84 25 chr4 92207358 92207644 -63422476 + Lx8 LINE L1 6822 7124 -349 2 1288 458 300 88 0 chr4 92207655 92207825 -63422295 + Lx5 LINE L1 6866 7050 0 2 1288 227 303 0 0 chr4 92207860 92207926 -63422194 + GA-rich Low_complexity Low_complexity 4 69 0 2 1288 510 17 0 0 chr4 92207931 92207990 -63422130 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 1288 540 0 0 0 chr4 92208188 92208248 -63421872 + (TCTCC)n Simple_repeat Simple_repeat 5 64 0 2 1288 208 325 0 0 chr4 92209176 92209256 -63420864 - MIR3 SINE MIR -3 205 126 2 1288 399 351 15 22 chr4 92210381 92210515 -63419605 + LTR33B LTR ERVL 80 212 -291 2 1288 21 0 0 0 chr4 92211670 92211691 -63418429 + AT_rich Low_complexity Low_complexity 1 21 0 2 1288 26 0 0 0 chr4 92211776 92211802 -63418318 + AT_rich Low_complexity Low_complexity 1 26 0 2 1288 364 350 40 74 chr4 92211826 92212004 -63418116 + B3A SINE B2 39 213 -3 2 1288 22 56 0 0 chr4 92212797 92212833 -63417287 + AT_rich Low_complexity Low_complexity 1 36 0 2 1288 23 0 0 0 chr4 92213017 92213040 -63417080 + AT_rich Low_complexity Low_complexity 1 23 0 2 1288 2814 45 0 11 chr4 92213059 92213417 -63416703 - L1_Mus2 LINE L1 -540 6026 5673 2 1288 2688 118 7 14 chr4 92213416 92213836 -63416284 + L1_Mus2 LINE L1 5261 5677 -206 2 1288 610 307 44 33 chr4 92215196 92215570 -63414550 - L1_Mur3 LINE L1 -1164 4979 4564 2 1288 390 145 0 0 chr4 92215622 92215684 -63414436 - Lx4A LINE L1 -715 6343 6282 2 1288 359 363 0 0 chr4 92215724 92215859 -63414261 + Lx8 LINE L1 6243 6377 -1096 2 1288 621 342 82 34 chr4 92215888 92216327 -63413793 + Lx8 LINE L1 6563 7022 -451 2 1288 246 32 0 0 chr4 92217363 92217394 -63412726 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1288 1099 66 0 0 chr4 92217394 92217531 -63412589 - B1_Mus1 SINE Alu -9 139 3 2 1288 560 323 141 21 chr4 92217532 92218138 -63411982 - L1MC LINE L1 -2355 3791 3114 2 1288 508 379 15 87 chr4 92218188 92218454 -63411666 + B4A SINE B4 30 276 -16 2 1288 14839 25 0 0 chr4 92218645 92221069 -63409051 - L1Md_T LINE L1 -1 6581 4158 2 1288 297 71 0 0 chr4 92221274 92221284 -63408836 + (TG)n Simple_repeat Simple_repeat 1 10 0 2 1288 328 0 115 0 chr4 92221284 92221336 -63408784 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2 1288 297 71 0 0 chr4 92221336 92221367 -63408753 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1288 377 326 39 33 chr4 92221381 92221562 -63408558 - B3A SINE B2 -16 182 1 2 1288 30 0 0 0 chr4 92222590 92222620 -63407500 + AT_rich Low_complexity Low_complexity 1 30 0 2 1288 239 296 14 62 chr4 92222624 92222768 -63407352 - Lx7 LINE L1 0 7696 7560 2 1288 3368 278 81 15 chr4 92222776 92223787 -63406333 - Lx7 LINE L1 -447 7249 6170 2 1288 423 98 0 0 chr4 92223787 92223848 -63406272 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1288 3368 278 81 15 chr4 92223848 92223896 -63406224 - Lx7 LINE L1 -1527 6169 6120 2 1288 1241 291 160 25 chr4 92224732 92225296 -63404824 - RLTR26 LTR ERVK 0 642 3 2 1288 482 0 17 0 chr4 92225505 92225563 -63404557 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1288 26 64 0 0 chr4 92226793 92226840 -63403280 + AT_rich Low_complexity Low_complexity 1 47 0 2 1288 28 0 0 0 chr4 92227177 92227205 -63402915 + AT_rich Low_complexity Low_complexity 1 28 0 3 1288 1106 316 29 31 chr4 92227304 92227794 -63402326 - Lx9 LINE L1 -182 7462 6974 3 1288 6951 136 37 8 chr4 92227794 92228985 -63401135 + L1_Mm LINE L1 3250 4475 -1408 3 1288 299 194 0 0 chr4 92228987 92229049 -63401071 - Lx9 LINE L1 -683 6961 6900 3 1288 257 280 33 33 chr4 92229229 92229351 -63400769 + L1MC1 LINE L1 5651 5772 -572 3 1288 353 291 18 114 chr4 92229946 92230113 -63400007 + MLT1A1 LTR MaLR 250 400 -8 3 1288 404 336 100 8 chr4 92230119 92230359 -63399761 + L1MC1 LINE L1 6070 6331 -2 3 1288 3380 138 34 14 chr4 92230657 92231218 -63398902 - Lx2B LINE L1 -5 6995 6424 3 1288 389 116 116 0 chr4 92231224 92231265 -63398855 + Lx2B LINE L1 6343 6383 -617 3 1288 378 0 0 0 chr4 92231265 92231307 -63398813 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1288 389 116 116 0 chr4 92231307 92231334 -63398786 + Lx2B LINE L1 6384 6417 -583 3 1288 760 99 28 0 chr4 92231423 92231564 -63398556 - RMER17B LTR ERVK -498 460 316 3 1288 924 306 48 48 chr4 92232937 92233438 -63396682 - Lx7 LINE L1 -455 7241 6741 3 1288 22 0 0 0 chr4 92233446 92233468 -63396652 + AT_rich Low_complexity Low_complexity 1 22 0 3 1288 284 188 0 14 chr4 92233645 92233715 -63396405 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1288 552 15 0 0 chr4 92233779 92233844 -63396276 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1288 3432 38 0 2 chr4 92235260 92235681 -63394439 - L1Md_F3 LINE L1 -3 6581 6162 3 1288 2284 52 48 175 chr4 92235736 92236154 -63393966 - RLTR10B2 LTR ERVK 0 365 1 3 1288 245 408 13 44 chr4 92236231 92236390 -63393730 + RSINE1 SINE B4 4 157 -8 3 1288 210 37 0 0 chr4 92236779 92236806 -63393314 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1288 210 118 0 0 chr4 92236983 92237017 -63393103 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 3 1288 393 39 0 0 chr4 92237017 92237068 -63393052 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1288 252 329 13 0 chr4 92237086 92237162 -63392958 - ID_B1 SINE B4 -26 198 122 3 1288 226 379 0 0 chr4 92237914 92237980 -63392140 + B4A SINE B4 1 66 -226 3 1288 443 219 0 7 chr4 92238816 92238954 -63391166 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1288 1300 170 123 6 chr4 92239822 92240027 -63390093 + Lx2 LINE L1 6693 6882 -115 3 1288 183 80 0 0 chr4 92240027 92240052 -63390068 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 3 1288 1300 168 125 5 chr4 92240052 92240162 -63389958 + Lx2 LINE L1 6883 6996 -1 3 1288 3536 269 42 12 chr4 92240162 92241149 -63388971 + Lx5 LINE L1 5933 6960 -90 3 1288 494 329 56 79 chr4 92241383 92241687 -63388433 - MER21B LTR ERV1 -121 742 446 3 1288 26 30 0 0 chr4 92242267 92242300 -63387820 + AT_rich Low_complexity Low_complexity 1 33 0 3 1288 23 54 0 0 chr4 92243790 92243827 -63386293 + AT_rich Low_complexity Low_complexity 1 37 0 3 1288 2744 108 7 14 chr4 92243928 92244361 -63385759 - L1_Mus3 LINE L1 0 6638 6209 3 1288 549 80 0 0 chr4 92244722 92244797 -63385323 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1288 31 26 0 0 chr4 92245951 92245989 -63384131 + AT_rich Low_complexity Low_complexity 1 38 0 3 1288 24 0 0 0 chr4 92246506 92246530 -63383590 + AT_rich Low_complexity Low_complexity 1 24 0 3 1288 342 81 10 131 chr4 92247320 92247419 -63382701 - Lx3_Mus LINE L1 0 7009 6923 3 1288 3461 56 0 22 chr4 92248424 92248881 -63381239 + L1Md_F2 LINE L1 6136 6582 0 3 1288 24 0 0 0 chr4 92250107 92250131 -63379989 + AT_rich Low_complexity Low_complexity 1 24 0 3 1288 242 191 204 45 chr4 92250288 92250376 -63379744 - MLT1A1 LTR MaLR 0 408 307 3 1288 22 0 0 0 chr4 92250913 92250935 -63379185 + AT_rich Low_complexity Low_complexity 1 22 0 3 1288 994 98 0 0 chr4 92250935 92251068 -63379052 + B1_Mm SINE Alu 3 135 -12 3 1288 195 42 0 0 chr4 92251069 92251093 -63379027 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 3 1288 761 80 18 0 chr4 92251163 92251276 -63378844 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 3 1288 405 0 0 0 chr4 92251435 92251480 -63378640 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1288 725 185 23 0 chr4 92251496 92251669 -63378451 + GA-rich Low_complexity Low_complexity 2 178 0 3 1288 1013 98 6 23 chr4 92251681 92251858 -63378262 + (GAGAA)n Simple_repeat Simple_repeat 3 176 0 3 1288 510 149 0 0 chr4 92251858 92251932 -63378188 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 3 1288 1066 86 12 6 chr4 92253726 92253890 -63376230 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 3 1288 23 101 0 0 chr4 92254015 92254094 -63376026 + AT_rich Low_complexity Low_complexity 1 79 0 3 1288 799 240 34 6 chr4 92254658 92254834 -63375286 + Lx6 LINE L1 7278 7458 -2 3 1288 468 0 0 0 chr4 92254918 92254970 -63375150 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1288 482 57 14 0 chr4 92254970 92255039 -63375081 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1288 21 36 0 0 chr4 92255402 92255430 -63374690 + AT_rich Low_complexity Low_complexity 1 28 0 3 1288 29 0 0 0 chr4 92255654 92255683 -63374437 + AT_rich Low_complexity Low_complexity 1 29 0 3 1288 3506 76 2 25 chr4 92255810 92256296 -63373824 + MT2C_Mm LTR ERVL 1 475 0 3 1288 506 43 14 0 chr4 92256616 92256685 -63373435 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1288 625 294 84 53 chr4 92256920 92257146 -63372974 + B4A SINE B4 2 234 -58 3 1288 815 201 17 6 chr4 92257151 92257326 -63372794 + Lx3A LINE L1 6794 6970 -11 3 1288 225 108 0 0 chr4 92257727 92257764 -63372356 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1288 182 33 0 62 chr4 92258065 92258097 -63372023 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 1288 22 56 0 0 chr4 92258260 92258296 -63371824 + AT_rich Low_complexity Low_complexity 1 36 0 3 1288 207 0 0 0 chr4 92259225 92259248 -63370872 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1288 459 311 104 11 chr4 92262420 92262602 -63367518 + B3A SINE B2 2 200 -16 3 1288 227 79 26 0 chr4 92262874 92262912 -63367208 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1288 405 0 0 0 chr4 92264041 92264086 -63366034 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3 1288 26 0 0 0 chr4 92264324 92264350 -63365770 + AT_rich Low_complexity Low_complexity 1 26 0 3 1288 2212 134 3 11 chr4 92265152 92265521 -63364599 - Lx LINE L1 0 6654 6289 3 1288 241 350 39 10 chr4 92265555 92265659 -63364461 - Lx7 LINE L1 -795 6849 6743 3 1288 421 333 32 32 chr4 92265671 92265857 -63364263 - Lx7 LINE L1 -960 6684 6499 3 1288 369 0 0 0 chr4 92265990 92266031 -63364089 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1288 814 311 108 16 chr4 92266608 92266980 -63363140 + MTD LTR MaLR 13 418 -1 3 1288 764 247 173 17 chr4 92266998 92267384 -63362736 - Lx7 LINE L1 -1705 5991 5521 3 1288 1625 26 0 16 chr4 92267551 92267745 -63362375 + B2_Mm1t SINE B2 3 193 0 3 1288 282 73 0 0 chr4 92268231 92268272 -63361848 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1288 423 38 0 0 chr4 92268357 92268410 -63361710 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1288 256 239 14 29 chr4 92268607 92268676 -63361444 + RLTR10D LTR ERVK 292 359 0 3 1288 693 387 18 14 chr4 92268698 92269143 -63360977 - Lx8 LINE L1 -830 6643 6197 3 1288 498 17 0 0 chr4 92269147 92269206 -63360914 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1288 543 31 0 0 chr4 92269288 92269353 -63360767 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1288 352 196 75 15 chr4 92269361 92269448 -63360672 - Lx8 LINE L1 -1553 5920 5832 3 1288 1047 97 0 0 chr4 92271448 92271593 -63358527 - B1_Mus1 SINE Alu -2 146 2 3 1288 48 32 0 0 chr4 92271954 92272016 -63358104 + AT_rich Low_complexity Low_complexity 1 62 0 3 1288 569 297 0 60 chr4 92272217 92272432 -63357688 + MYSERV6-int LTR ERVK 3989 4190 -4769 3 1288 5201 182 35 48 chr4 92272433 92272636 -63357484 - RLTR25A LTR ERVK 0 1103 906 3 1288 952 57 11 63 chr4 92272636 92272825 -63357295 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1288 5201 182 35 48 chr4 92272825 92273739 -63356381 - RLTR25A LTR ERVK -198 905 1 3 2 14067 151 54 8 chr4 92273971 92276841 -63353279 - Lx4A LINE L1 -859 6199 3191 3 1289 1263 217 59 21 chr4 92276857 92277144 -63352976 + Lx3C LINE L1 6668 6965 -11 3 1289 934 54 8 8 chr4 92277162 92277292 -63352828 + (GAA)n Simple_repeat Simple_repeat 3 132 0 3 1289 3679 141 18 1 chr4 92277300 92278076 -63352044 + L1_Mur2 LINE L1 1081 1874 -4003 3 1289 2701 258 74 79 chr4 92278077 92280026 -63350094 + MYSERV6-int LTR ERVK 7817 8956 -3 3 1289 837 308 45 28 chr4 92280033 92280391 -63349729 + BGLII_B LTR ERVK 31 394 -47 3 1289 21 82 0 0 chr4 92283149 92283198 -63346922 + AT_rich Low_complexity Low_complexity 1 49 0 3 1289 443 317 10 73 chr4 92283481 92283685 -63346435 + B3A SINE B2 2 192 -6 3 1289 500 223 0 0 chr4 92284843 92284937 -63345183 - RMER19C LTR ERVK 0 611 518 3 1289 332 294 56 56 chr4 92286768 92286930 -63343190 + RLTR4_MM-int LTR ERV1 1239 1400 -6052 3 1289 444 289 113 44 chr4 92287207 92287410 -63342710 + RLTR4_MM-int LTR ERV1 1952 2168 -5433 3 1289 386 211 73 66 chr4 92287613 92287750 -63342370 + MuRRS4-int LTR ERV1 3506 3643 -3809 3 1289 315 0 0 0 chr4 92287774 92287809 -63342311 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1289 1019 162 14 19 chr4 92287813 92288021 -63342099 - Lx LINE L1 -6 6648 6442 3 1289 349 323 83 3 chr4 92288290 92288496 -63341624 + MuRRS4-int LTR ERV1 2490 2669 -2648 3 1289 1218 324 43 28 chr4 92288852 92289389 -63340731 + MuRRS4-int LTR ERV1 3470 4014 -1049 3 1289 2926 175 40 7 chr4 92289436 92290010 -63340110 + RLTR25A LTR ERVK 255 847 -256 3 1289 641 206 53 40 chr4 92290093 92290245 -63339875 - RMER19C LTR ERVK -90 521 368 3 1289 409 265 0 20 chr4 92290220 92290320 -63339800 - RMER19C LTR ERVK -180 431 334 3 1289 610 231 18 24 chr4 92290320 92290484 -63339636 - Lx9 LINE L1 -161 7483 7321 3 1289 629 310 136 46 chr4 92290670 92291010 -63339110 + MTEb LTR MaLR 9 367 -12 3 1289 234 105 0 0 chr4 92291376 92291414 -63338706 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1289 250 333 16 0 chr4 92291707 92291770 -63338350 - RMER20B LTR ERVK -563 64 1 3 1289 625 238 127 8 chr4 92291819 92292056 -63338064 + Lx9 LINE L1 7373 7637 -7 3 1289 348 326 61 23 chr4 92292394 92292658 -63337462 + L1MCa LINE L1 56 329 -6179 3 1289 561 287 91 33 chr4 92292719 92292993 -63337127 + L1M2 LINE L1 4049 4338 -1805 3 1289 365 207 2 29 chr4 92293212 92293352 -63336768 + L1MCa LINE L1 4586 4720 -1601 3 1289 1113 220 103 16 chr4 92293569 92293879 -63336241 - Lx4A LINE L1 -36 7022 6686 3 1289 1017 65 36 0 chr4 92294182 92294321 -63335799 + B1_Mus1 SINE Alu 5 148 0 4 1289 323 57 27 41 chr4 92294322 92294395 -63335725 + (CAAAAA)n Simple_repeat Simple_repeat 1 72 0 4 1289 799 253 36 93 chr4 92294677 92294925 -63335195 + RMER1C Other Other 10 243 -1099 4 1289 801 0 0 0 chr4 92295142 92295231 -63334889 + (TTC)n Simple_repeat Simple_repeat 2 90 0 4 1289 8960 23 1 1 chr4 92295233 92296292 -63333828 - Lx4A LINE L1 -1218 5840 4785 3 1289 6469 42 0 0 chr4 92296292 92297100 -63333020 + L1Md_T LINE L1 5805 6582 0 4 1289 1843 242 166 14 chr4 92297116 92297433 -63332687 + RMER1C Other Other 681 1039 -303 4 1289 6408 130 24 42 chr4 92297433 92298594 -63331526 + Lx3A LINE L1 5829 6968 -13 4 1289 261 0 0 0 chr4 92298594 92298623 -63331497 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1289 1843 242 166 14 chr4 92298623 92298878 -63331242 + RMER1C Other Other 1040 1339 -3 4 1289 1158 75 0 0 chr4 92298886 92299032 -63331088 + B1_Mus1 SINE Alu 1 146 -2 4 1289 180 97 0 0 chr4 92299035 92299066 -63331054 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1289 29 78 0 0 chr4 92299142 92299206 -63330914 + AT_rich Low_complexity Low_complexity 1 64 0 4 1289 249 218 85 39 chr4 92299284 92299413 -63330707 + L1MA7 LINE L1 6150 6284 -7 4 1289 1807 260 23 41 chr4 92299644 92300158 -63329962 - Lx9 LINE L1 -725 6919 6415 4 1289 309 51 0 0 chr4 92300233 92300272 -63329848 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1289 409 261 104 17 chr4 92300464 92300694 -63329426 + L1MA8 LINE L1 6027 6276 -15 4 1289 333 159 0 0 chr4 92301144 92301207 -63328913 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 4 1289 252 182 51 25 chr4 92301603 92301682 -63328438 + A-rich Low_complexity Low_complexity 2 82 0 4 1289 2353 100 61 11 chr4 92301694 92302069 -63328051 + L1Md_F2 LINE L1 6187 6580 -2 4 1289 26598 141 22 15 chr4 92302150 92308336 -63321784 - L1_Mus3 LINE L1 -5 6633 397 4 1289 3217 51 2 17 chr4 92309458 92309877 -63320243 - L1Md_F2 LINE L1 0 6582 6170 4 1289 1041 135 4 65 chr4 92309877 92310122 -63319998 + MusHAL1 LINE L1 84 313 -2399 4 1289 1741 110 12 0 chr4 92310122 92310530 -63319590 - L1Md_A LINE L1 -4425 1458 1047 4 1289 1900 138 125 11 chr4 92310517 92310884 -63319236 - L1VL1 LINE L1 -5365 1057 649 4 1289 3739 160 6 3 chr4 92311037 92311677 -63318443 + L1Md_F2 LINE L1 380 1021 -5595 4 1289 25582 93 64 3 chr4 92311674 92315542 -63314578 + L1Md_F2 LINE L1 1483 5586 -297 4 1289 6802 86 32 3 chr4 92315543 92316492 -63313628 + L1Md_F2 LINE L1 5588 6563 -19 4 1289 760 338 24 21 chr4 92316849 92317181 -63312939 - Lx8 LINE L1 -365 7108 6776 4 1289 21 0 0 0 chr4 92317331 92317352 -63312768 + AT_rich Low_complexity Low_complexity 1 21 0 4 1289 459 0 0 0 chr4 92317456 92317507 -63312613 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1289 191 196 0 51 chr4 92317891 92317950 -63312170 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 4 1289 21 57 0 0 chr4 92317987 92318022 -63312098 + AT_rich Low_complexity Low_complexity 1 35 0 4 1289 423 312 68 12 chr4 92318387 92318727 -63311393 - L1M2 LINE L1 -1527 4616 4258 4 1289 705 56 0 0 chr4 92319758 92319848 -63310272 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 4 1289 24 32 0 0 chr4 92320496 92320527 -63309593 + AT_rich Low_complexity Low_complexity 1 31 0 4 1289 260 308 26 0 chr4 92320588 92320666 -63309454 - Lx9 LINE L1 -1110 6534 6455 4 1289 2055 212 91 6 chr4 92320652 92321126 -63308994 + Lx9 LINE L1 6825 7338 -306 4 1289 315 154 60 60 chr4 92321134 92321251 -63308869 + Lx9 LINE L1 7528 7644 0 4 1289 25 0 0 0 chr4 92321910 92321935 -63308185 + AT_rich Low_complexity Low_complexity 1 25 0 4 1289 1052 104 0 0 chr4 92323189 92323333 -63306787 + B1_Mm SINE Alu 2 145 -2 4 1289 628 23 11 33 chr4 92323887 92323978 -63306142 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1289 1373 238 100 71 chr4 92324279 92324731 -63305389 - RLTR20B3 LTR ERVK -108 469 5 4 1289 365 135 156 11 chr4 92324738 92324828 -63305292 - MYSERV16_I-int LTR ERVK -3 2323 2221 4 1289 1756 199 24 76 chr4 92324835 92325108 -63305012 - MYSERV16_I-int LTR ERVK -238 2088 1829 4 1289 4165 44 0 6 chr4 92325108 92325616 -63304504 + L1Md_F3 LINE L1 6079 6583 -1 4 1289 1756 199 24 76 chr4 92325616 92325800 -63304320 - MYSERV16_I-int LTR ERVK -498 1828 1655 4 1289 1266 245 22 58 chr4 92327268 92327628 -63302492 - Lx2B LINE L1 -5 6995 6649 4 1289 280 329 35 13 chr4 92328264 92328451 -63301669 - L1M3 LINE L1 -3435 2708 2515 4 1289 192 152 0 0 chr4 92329067 92329100 -63301020 + (CAT)n Simple_repeat Simple_repeat 2 34 0 4 1289 810 294 106 32 chr4 92329648 92329996 -63300124 - Lx9 LINE L1 -315 7329 6956 4 1289 230 272 64 0 chr4 92330078 92330203 -63299917 + Lx9 LINE L1 7510 7642 -2 4 1289 21 36 0 0 chr4 92330234 92330262 -63299858 + AT_rich Low_complexity Low_complexity 1 28 0 4 1289 244 330 18 28 chr4 92331390 92331499 -63298621 - MLT1H2 LTR MaLR 0 489 382 4 1289 230 275 110 0 chr4 92331890 92331981 -63298139 + L1ME2 LINE L1 5998 6098 -66 4 1289 28 61 0 0 chr4 92331984 92332033 -63298087 + AT_rich Low_complexity Low_complexity 1 49 0 4 1289 1207 41 0 7 chr4 92332245 92332391 -63297729 + B1_Mm SINE Alu 1 145 -2 4 1289 412 32 16 16 chr4 92332395 92332458 -63297662 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 4 1289 207 264 0 65 chr4 92333059 92333152 -63296968 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 4 1289 24 53 0 0 chr4 92333235 92333273 -63296847 + AT_rich Low_complexity Low_complexity 1 38 0 4 1289 633 80 0 0 chr4 92333423 92333511 -63296609 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1289 887 327 99 13 chr4 92333547 92333919 -63296201 - MTD LTR MaLR -15 404 1 4 1289 716 218 58 79 chr4 92334028 92334341 -63295779 - Lx7 LINE L1 0 7696 7389 4 1289 212 56 83 0 chr4 92334341 92334377 -63295743 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4 1289 716 218 58 79 chr4 92334377 92334392 -63295728 - Lx7 LINE L1 -308 7388 7376 4 1289 240 167 0 0 chr4 92334418 92334466 -63295654 + GA-rich Low_complexity Low_complexity 1 48 0 4 1289 787 287 60 45 chr4 92334501 92334562 -63295558 - Lx7 LINE L1 -371 7325 7264 4 1289 3060 72 47 0 chr4 92334562 92334964 -63295156 + L1_Mus1 LINE L1 6147 6567 0 4 1289 787 287 60 45 chr4 92334964 92335234 -63294886 - Lx7 LINE L1 -433 7263 6989 4 1289 444 67 0 0 chr4 92335258 92335318 -63294802 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1289 249 292 57 21 chr4 92335324 92335464 -63294656 - Lx7 LINE L1 -1527 6169 6025 4 1289 3717 159 52 29 chr4 92335475 92336205 -63293915 - Lx LINE L1 0 6654 5908 4 1289 2526 163 18 12 chr4 92336205 92336696 -63293424 + L1_Mur2 LINE L1 3423 3916 -1961 4 1289 5574 79 4 10 chr4 92336698 92337507 -63292613 + L1_Mus2 LINE L1 5528 6332 -234 4 1289 2632 122 13 0 chr4 92337505 92338002 -63292118 + Lx LINE L1 5420 5926 -728 4 1289 871 271 15 26 chr4 92338006 92338271 -63291849 - Lx7 LINE L1 -1683 6013 5752 4 1289 33 56 0 0 chr4 92338739 92338793 -63291327 + AT_rich Low_complexity Low_complexity 1 54 0 4 1289 22 56 0 0 chr4 92338863 92338899 -63291221 + AT_rich Low_complexity Low_complexity 1 36 0 4 1289 201 324 15 0 chr4 92340796 92340864 -63289256 + MIR SINE MIR 86 154 -108 4 1289 21 0 0 0 chr4 92343392 92343413 -63286707 + AT_rich Low_complexity Low_complexity 1 21 0 4 1289 805 309 79 22 chr4 92344091 92344409 -63285711 - Lx7 LINE L1 -523 7173 6838 4 1289 2778 261 44 25 chr4 92344416 92345638 -63284482 - Lx7 LINE L1 -1151 6545 4920 4 1289 408 40 0 0 chr4 92345638 92345688 -63284432 + (CAT)n Simple_repeat Simple_repeat 2 51 0 4 1289 826 241 37 20 chr4 92345688 92345703 -63284417 - Lx7 LINE L1 -961 4919 4907 4 1289 2484 162 30 2 chr4 92345703 92346142 -63283978 - Lx3B LINE L1 -14 6959 6509 4 1289 826 241 37 20 chr4 92346142 92346262 -63283858 - Lx7 LINE L1 -974 4906 4784 4 1289 237 289 183 76 chr4 92346263 92346302 -63283818 - ORR1D1 LTR MaLR -1 373 342 4 1289 396 0 0 0 chr4 92346302 92346346 -63283774 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1289 237 289 183 76 chr4 92346346 92346437 -63283683 - ORR1D1 LTR MaLR -33 341 229 4 1289 867 265 14 5 chr4 92346473 92346685 -63283435 - B3 SINE B2 0 216 3 4 1289 2027 142 20 20 chr4 92347230 92347588 -63282532 - Lx LINE L1 0 6654 6297 4 1289 204 289 24 24 chr4 92348628 92348713 -63281407 + (TCTCTG)n Simple_repeat Simple_repeat 6 90 0 4 1289 390 234 28 9 chr4 92349554 92349662 -63280458 + HAL1-2a_MD LINE L1 2345 2454 -570 4 1289 648 247 42 47 chr4 92349832 92350023 -63280097 + Lx6 LINE L1 7267 7456 -4 4 1289 364 256 42 53 chr4 92350211 92350401 -63279719 + L1MC2 LINE L1 5679 5866 -478 4 1289 1848 260 91 24 chr4 92350909 92351536 -63278584 + Lx6 LINE L1 5702 6370 -1090 4 1289 4309 164 57 5 chr4 92351544 92352399 -63277721 + L1_Mm LINE L1 4121 5020 -863 4 1289 999 276 45 124 chr4 92352399 92352985 -63277135 - RMER13B LTR ERVK -1 957 370 4 1289 681 13 0 0 chr4 92352985 92353063 -63277057 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1289 762 303 83 127 chr4 92353063 92353123 -63276997 - RMER13B LTR ERVK -531 427 340 4 1289 7495 145 29 43 chr4 92353126 92354537 -63275583 + ETnERV3-int LTR ERVK 3999 5389 -419 4 1289 1374 134 76 17 chr4 92354537 92354773 -63275347 + ETnERV3-int LTR ERVK 5529 5778 -30 4 1289 4503 144 13 69 chr4 92354788 92355639 -63274481 + RLTR13B4 LTR ERVK 1 803 0 4 1289 2164 158 47 12 chr4 92355639 92356044 -63274076 + Lx LINE L1 6228 6646 -8 4 1289 1133 96 0 0 chr4 92357960 92358106 -63272014 + B1_Mm SINE Alu 2 147 0 4 1289 25 0 0 0 chr4 92358106 92358131 -63271989 + AT_rich Low_complexity Low_complexity 1 25 0 4 1289 267 252 42 56 chr4 92358233 92358376 -63271744 + Lx9 LINE L1 7480 7620 -24 4 1289 1141 204 134 33 chr4 92358528 92358827 -63271293 - ORR1A4 LTR MaLR 0 329 1 4 1289 525 32 0 0 chr4 92358834 92358897 -63271223 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1289 360 64 0 0 chr4 92358897 92358943 -63271177 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1289 951 315 82 18 chr4 92358977 92359469 -63270651 - Lx5 LINE L1 -57 7403 6542 4 1289 2278 253 45 19 chr4 92359512 92360385 -63269735 - Lx5 LINE L1 -673 6377 5462 4 1289 7801 175 30 1 chr4 92360419 92361824 -63268296 - Lx2B LINE L1 -12 6988 5539 4 1289 2148 147 45 31 chr4 92361859 92362280 -63267840 - Lx2 LINE L1 -859 6138 5712 4 1289 4915 157 9 11 chr4 92362280 92363124 -63266996 + Lx2 LINE L1 6144 6986 -11 4 1289 210 62 40 40 chr4 92363124 92363174 -63266946 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 4 1289 3179 231 39 3 chr4 92363183 92364047 -63266073 - Lx2 LINE L1 -465 5412 4518 4 1289 3856 140 9 16 chr4 92364047 92364684 -63265436 - Lx LINE L1 -5 6649 6017 4 1289 3690 156 114 13 chr4 92364684 92365357 -63264763 + Lx LINE L1 5243 5983 -671 4 1289 1199 238 16 14 chr4 92365352 92365722 -63264398 - Lx2 LINE L1 -1353 4527 4157 4 1289 344 370 90 4 chr4 92365734 92365989 -63264131 - L1MC3 LINE L1 -1809 5976 5700 4 1289 803 335 82 48 chr4 92366000 92366354 -63263766 - ORR1D2 LTR MaLR 0 370 5 4 1289 559 194 46 8 chr4 92366358 92366488 -63263632 - ORR1D2-int LTR MaLR 0 1370 1236 4 1289 674 319 73 50 chr4 92366476 92366793 -63263327 - ORR1D2-int LTR MaLR -377 993 670 4 1289 378 0 0 0 chr4 92366793 92366835 -63263285 + (CAG)n Simple_repeat Simple_repeat 2 43 0 4 1289 1408 258 22 27 chr4 92366914 92367284 -63262836 - ORR1D2-int LTR MaLR -1002 368 1 4 1289 792 248 169 44 chr4 92367289 92367609 -63262511 - ORR1D2 LTR MaLR -5 365 6 4 1289 567 81 0 0 chr4 92367724 92367810 -63262310 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1289 448 190 0 65 chr4 92368532 92368656 -63261464 - Lx9 LINE L1 0 7644 7529 4 1289 787 290 28 12 chr4 92368651 92368906 -63261214 - Lx9 LINE L1 -226 7418 7160 4 1289 498 33 0 0 chr4 92370475 92370535 -63259585 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1289 618 96 0 0 chr4 92370535 92370639 -63259481 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1289 21 0 0 0 chr4 92370887 92370908 -63259212 + AT_rich Low_complexity Low_complexity 1 21 0 5 1289 306 386 42 47 chr4 92370991 92371184 -63258936 - Lx8 LINE L1 -146 7327 7136 5 1289 37918 42 0 3 chr4 92371185 92377438 -63252682 - L1Md_T LINE L1 0 6585 253 5 1289 725 316 26 25 chr4 92377529 92377969 -63252151 + Lx7 LINE L1 5475 5914 -1782 5 1289 508 267 173 0 chr4 92378991 92379141 -63250979 + ORR1D2 LTR MaLR 1 176 -194 5 1289 549 99 0 0 chr4 92379141 92379222 -63250898 + (CCCCCT)n Simple_repeat Simple_repeat 4 84 0 5 1289 304 295 109 40 chr4 92379245 92379446 -63250674 + ORR1D2 LTR MaLR 149 363 -7 5 1289 225 83 0 0 chr4 92379506 92379542 -63250578 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1289 516 336 38 100 chr4 92379612 92379830 -63250290 - B3A SINE B2 -7 209 7 5 1289 1103 259 111 70 chr4 92381287 92381772 -63248348 + Lx9 LINE L1 6822 7326 -318 5 1289 306 0 0 0 chr4 92381788 92381822 -63248298 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1289 376 140 161 45 chr4 92381879 92381991 -63248129 + Lx9 LINE L1 7519 7643 -1 5 1289 1834 125 29 20 chr4 92382603 92382946 -63247174 - Lx LINE L1 0 6654 6309 5 1289 330 338 43 27 chr4 92383320 92383621 -63246499 - L1M1 LINE L1 -516 5787 5482 5 1289 310 178 156 0 chr4 92383663 92383753 -63246367 + Lx9 LINE L1 7476 7579 -65 5 1289 1525 249 65 28 chr4 92384042 92384537 -63245583 - Lx6 LINE L1 -1247 6213 5701 5 1289 804 239 6 0 chr4 92384533 92384713 -63245407 - Lx6 LINE L1 -655 5225 5045 5 1289 238 341 0 0 chr4 92384908 92384996 -63245124 + CT-rich Low_complexity Low_complexity 2 89 0 5 1289 329 153 14 0 chr4 92385118 92385190 -63244930 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1289 955 118 14 0 chr4 92385471 92385615 -63244505 - B1_Mus1 SINE Alu 0 148 3 5 1289 4658 104 19 1 chr4 92385707 92386436 -63243684 - L1_Mur1 LINE L1 -2072 3814 3073 5 1289 2105 140 16 0 chr4 92386433 92386754 -63243366 + Lx3A LINE L1 6205 6530 -479 5 1289 888 95 0 7 chr4 92386754 92386892 -63243228 + L1_Mus2 LINE L1 6429 6565 -1 5 1289 26 50 0 0 chr4 92386896 92386936 -63243184 + AT_rich Low_complexity Low_complexity 1 40 0 5 1289 2664 152 15 17 chr4 92386941 92387415 -63242705 + Lx3A LINE L1 6509 6981 0 5 1289 441 0 0 0 chr4 92387441 92387490 -63242630 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 5 1289 24 0 0 0 chr4 92387626 92387650 -63242470 + AT_rich Low_complexity Low_complexity 1 24 0 5 1289 949 330 62 62 chr4 92387873 92388280 -63241840 + Lx8 LINE L1 6922 7350 -123 5 1289 1005 181 35 4 chr4 92388280 92388508 -63241612 + Lx LINE L1 6420 6654 0 5 1289 949 330 62 62 chr4 92388508 92388649 -63241471 + Lx8 LINE L1 7351 7470 -3 5 1289 847 90 0 0 chr4 92389172 92389294 -63240826 + B1_Mus2 SINE Alu 1 122 -25 5 1289 3074 276 40 48 chr4 92389823 92390827 -63239293 + Lx2B LINE L1 343 1338 -6390 5 1289 4629 161 6 1 chr4 92392204 92393024 -63237096 - Lx2B LINE L1 -1439 4438 3615 5 1289 6469 198 25 36 chr4 92393022 92394321 -63235799 + Lx2B LINE L1 4442 5732 -145 5 1289 1063 101 0 26 chr4 92394321 92394473 -63235647 + B1_Mus1 SINE Alu 1 148 0 5 1289 6469 214 58 32 chr4 92394473 92395670 -63234450 + Lx2B LINE L1 5728 6979 -21 5 1289 2289 162 5 5 chr4 92396136 92396545 -63233575 - L1_Mm LINE L1 -982 4901 4493 5 1289 1797 187 11 3 chr4 92396545 92396899 -63233221 + L1_Mur2 LINE L1 4205 4561 -1316 5 1289 1617 180 214 3 chr4 92396896 92397558 -63232562 - L1_Mur2 LINE L1 -4161 1716 915 5 1289 625 261 32 28 chr4 92397952 92398169 -63231951 + RLTR45 LTR ERVK 265 482 0 5 1289 548 338 43 34 chr4 92398659 92399008 -63231112 + Lx9 LINE L1 7064 7415 -229 5 1289 507 17 0 0 chr4 92399044 92399104 -63231016 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1289 6779 93 25 4 chr4 92400822 92401782 -63228338 - L1_Mus2 LINE L1 0 6566 5587 5 1289 860 332 53 25 chr4 92401798 92402119 -63228001 + ORR1E LTR MaLR 28 357 -2 5 1289 27 29 0 0 chr4 92404081 92404115 -63226005 + AT_rich Low_complexity Low_complexity 1 34 0 5 1289 23 105 0 0 chr4 92404719 92404805 -63225315 + AT_rich Low_complexity Low_complexity 1 86 0 5 1289 237 159 0 0 chr4 92405590 92405634 -63224486 + (TCCA)n Simple_repeat Simple_repeat 4 47 0 5 1290 3562 284 41 51 chr4 92407061 92408314 -63221806 + Lx6 LINE L1 5999 7238 -222 5 1290 705 183 10 7 chr4 92408306 92408464 -63221656 - L1_Mur2 LINE L1 -1745 4138 3976 5 1290 21 0 0 0 chr4 92408535 92408556 -63221564 + AT_rich Low_complexity Low_complexity 1 21 0 5 1290 645 286 49 6 chr4 92409454 92409637 -63220483 + B3A SINE B2 6 196 -2 5 1290 1153 363 78 24 chr4 92410678 92411651 -63218469 - Lx8 LINE L1 -191 7282 6257 5 1290 544 128 9 18 chr4 92411727 92411838 -63218282 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 5 1290 578 331 93 34 chr4 92411914 92412408 -63217712 + Lx7 LINE L1 5587 6109 -1587 5 1290 21 71 0 0 chr4 92415763 92415805 -63214315 + AT_rich Low_complexity Low_complexity 1 42 0 5 1290 672 309 35 13 chr4 92415943 92416169 -63213951 - B4A SINE B4 -60 232 2 5 1290 29 28 0 0 chr4 92416339 92416375 -63213745 + AT_rich Low_complexity Low_complexity 1 36 0 5 1290 624 311 14 5 chr4 92416380 92416593 -63213527 + B3 SINE B2 1 215 -1 5 1290 242 352 130 14 chr4 92416657 92416873 -63213247 - MER110 LTR ERV1 -218 273 33 5 1290 3477 18 2 0 chr4 92417263 92417658 -63212462 + MTA_Mm LTR MaLR 1 396 0 5 1290 9580 16 1 2 chr4 92417658 92418757 -63211363 + MTA_Mm-int LTR MaLR 1 1098 0 5 1290 3477 18 2 0 chr4 92418757 92419152 -63210968 + MTA_Mm LTR MaLR 1 396 0 5 1290 4009 80 72 3 chr4 92419489 92420068 -63210052 + L1Md_F2 LINE L1 5952 6570 -12 5 1290 494 313 107 38 chr4 92420262 92420551 -63209569 - MLT1A1 LTR MaLR -5 403 95 5 1290 3664 57 2 0 chr4 92420734 92421192 -63208928 - L1Md_F2 LINE L1 -369 6213 5755 5 1290 2892 71 10 19 chr4 92421192 92421606 -63208514 + L1Md_F2 LINE L1 6163 6572 -10 5 1290 380 282 57 40 chr4 92421856 92422033 -63208087 + L1M4 LINE L1 2335 2514 -3632 5 1290 492 282 145 73 chr4 92422720 92423332 -63206788 + L1M4 LINE L1 2529 3184 -2962 5 1290 324 344 106 19 chr4 92423439 92424023 -63206097 + L1M4 LINE L1 3582 4216 -1930 5 1290 210 37 0 0 chr4 92424556 92424583 -63205537 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1290 420 20 0 0 chr4 92424583 92424631 -63205489 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1290 38553 48 1 4 chr4 92424722 92430854 -63199266 - L1Md_T LINE L1 0 6582 466 5 1290 2204 87 96 0 chr4 92430860 92431193 -63198927 - L1_Mus1 LINE L1 -9 6558 6194 5 1290 20037 97 8 7 chr4 92431369 92434940 -63195180 - L1Md_F2 LINE L1 -1 6581 3008 5 1290 2253 100 9 0 chr4 92435036 92435366 -63194754 - L1_Mur1 LINE L1 -1342 4544 4212 5 1290 584 174 17 17 chr4 92435364 92435481 -63194639 + Lx3B LINE L1 5976 6092 -881 5 1290 409 162 0 0 chr4 92435484 92435564 -63194556 + Lx3B LINE L1 6895 6974 -7 5 1290 38 0 0 0 chr4 92435565 92435603 -63194517 + AT_rich Low_complexity Low_complexity 1 38 0 5 1290 4931 138 67 3 chr4 92436166 92437015 -63193105 + Lx2 LINE L1 6095 6997 0 5 1290 252 0 0 0 chr4 92437015 92437043 -63193077 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1290 430 172 20 0 chr4 92437486 92437585 -63192535 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1290 3337 30 0 8 chr4 92437813 92438213 -63191907 + L1Md_F3 LINE L1 6174 6570 -14 5 1290 341 351 44 78 chr4 92439899 92440103 -63190017 + B3A SINE B2 1 197 -1 5 1290 185 108 0 26 chr4 92440211 92440249 -63189871 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1290 33 25 0 0 chr4 92440286 92440326 -63189794 + AT_rich Low_complexity Low_complexity 1 40 0 5 1290 22 35 0 0 chr4 92441048 92441077 -63189043 + AT_rich Low_complexity Low_complexity 1 29 0 5 1290 378 0 0 0 chr4 92441244 92441286 -63188834 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1290 1183 221 27 17 chr4 92441507 92441802 -63188318 + RMER6C LTR ERVK 1 300 -456 5 1290 198 268 113 0 chr4 92441916 92441987 -63188133 + MIRb SINE MIR 106 184 -84 5 1290 22 0 0 0 chr4 92442369 92442391 -63187729 + AT_rich Low_complexity Low_complexity 1 22 0 5 1290 1803 209 87 8 chr4 92443146 92443536 -63186584 - MTC LTR MaLR 0 421 1 5 1290 352 242 0 0 chr4 92443572 92443638 -63186482 + B2_Mm2 SINE B2 3 68 -127 5 1290 2357 117 41 62 chr4 92443652 92444090 -63186030 + Lx2A LINE L1 6578 7006 -2 5 1290 647 241 163 161 chr4 92444155 92444452 -63185668 - Lx9 LINE L1 -7 7637 7296 5 1290 297 75 0 0 chr4 92444452 92444492 -63185628 + (TGG)n Simple_repeat Simple_repeat 1 40 0 5 1290 647 241 163 161 chr4 92444492 92444753 -63185367 - Lx9 LINE L1 -349 7295 7078 5 1290 1213 187 18 50 chr4 92444824 92445106 -63185014 + RMER6C LTR ERVK 418 690 0 5 1290 432 276 65 0 chr4 92445106 92445229 -63184891 - Lx9 LINE L1 -1190 6454 6324 5 1290 1264 258 74 44 chr4 92445410 92445950 -63184170 - Lx9 LINE L1 -1441 6203 5648 5 1290 722 262 94 16 chr4 92445935 92446191 -63183929 + Lx9 LINE L1 5309 5584 -263 5 1290 743 311 51 7 chr4 92446422 92446697 -63183423 + Lx8 LINE L1 7028 7314 -159 5 1290 186 43 0 0 chr4 92447111 92447134 -63182986 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1290 536 235 0 0 chr4 92447359 92447457 -63182663 - RLTR33 LTR ERVK -2 676 579 5 1290 4373 129 51 0 chr4 92447457 92448146 -63181974 + L1Md_F LINE L1 284 1007 -5512 5 1290 1410 72 26 0 chr4 92448146 92448341 -63181779 + L1Md_F2 LINE L1 6369 6568 -14 5 1290 2632 185 143 0 chr4 92448346 92448946 -63181174 - RMER6C LTR ERVK -4 686 1 5 1290 1093 290 25 28 chr4 92448946 92449265 -63180855 + RMER1C Other Other 600 917 -425 5 1290 1088 199 326 15 chr4 92449267 92449477 -63180643 + RMER10A LTR ERVL 1 275 -167 5 1290 2195 113 190 0 chr4 92449477 92449840 -63180280 + RLTR10C LTR ERVK 3 434 -2 5 1290 1088 203 39 35 chr4 92449840 92450005 -63180115 + RMER10A LTR ERVL 276 441 -1 5 1290 1055 246 50 4 chr4 92450006 92450267 -63179853 + RMER1C Other Other 916 1188 -154 5 1290 29 47 0 0 chr4 92450559 92450602 -63179518 + AT_rich Low_complexity Low_complexity 1 43 0 5 1290 488 308 113 17 chr4 92450678 92450969 -63179151 - L1M5 LINE L1 -394 5779 5461 5 1290 231 146 0 0 chr4 92451397 92451438 -63178682 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1290 26 30 0 0 chr4 92451629 92451662 -63178458 + AT_rich Low_complexity Low_complexity 1 33 0 5 1290 408 314 41 15 chr4 92451883 92452169 -63177951 + L1_Mur3 LINE L1 4035 4310 -1570 5 1290 24 32 0 0 chr4 92452212 92452243 -63177877 + AT_rich Low_complexity Low_complexity 1 31 0 5 1290 547 241 97 11 chr4 92452243 92452419 -63177701 + Lx6 LINE L1 7269 7459 -1 5 1290 499 284 99 29 chr4 92452478 92452790 -63177330 + L1_Mur3 LINE L1 4420 4753 -1127 5 1290 1436 263 30 16 chr4 92452798 92453165 -63176955 + ORR1D1 LTR MaLR 1 372 -2 6 1290 1476 331 47 29 chr4 92453175 92454129 -63175991 + L1_Mur3 LINE L1 4764 5734 -146 5 1290 342 0 0 0 chr4 92454130 92454168 -63175952 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1290 660 154 6 33 chr4 92454168 92454349 -63175771 + (TA)n Simple_repeat Simple_repeat 2 177 0 6 1290 507 314 24 0 chr4 92454483 92454607 -63175513 + RSINE1 SINE B4 3 129 -36 6 1290 37 62 0 0 chr4 92454646 92454711 -63175409 + AT_rich Low_complexity Low_complexity 1 65 0 6 1290 732 306 22 11 chr4 92456068 92456250 -63173870 - B3 SINE B2 -29 187 4 6 1290 447 19 0 0 chr4 92456590 92456642 -63173478 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6 1290 400 274 11 0 chr4 92457526 92457621 -63172499 - PB1D10 SINE Alu -17 100 5 6 1290 333 0 0 0 chr4 92458089 92458126 -63171994 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1290 214 178 0 0 chr4 92458299 92458344 -63171776 + T-rich Low_complexity Low_complexity 1 45 0 6 1290 342 115 0 0 chr4 92460427 92460479 -63169641 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1290 27 49 0 0 chr4 92461090 92461131 -63168989 + AT_rich Low_complexity Low_complexity 1 41 0 6 1290 24 32 0 0 chr4 92461194 92461225 -63168895 + AT_rich Low_complexity Low_complexity 1 31 0 6 1290 228 321 71 0 chr4 92461335 92461419 -63168701 + MLT1E2 LTR MaLR 536 625 -2 6 1290 296 382 32 8 chr4 92462114 92462238 -63167882 + RSINE1 SINE B4 4 130 -35 6 1290 210 143 0 0 chr4 92462257 92462292 -63167828 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 6 1290 705 296 78 83 chr4 92462422 92462794 -63167326 - ORR1D2 LTR MaLR 0 370 1 6 1290 406 197 62 27 chr4 92462902 92463048 -63167072 - Lx9 LINE L1 -1 7643 7493 6 1290 21 0 0 0 chr4 92463737 92463758 -63166362 + AT_rich Low_complexity Low_complexity 1 21 0 6 1290 411 21 0 0 chr4 92464248 92464296 -63165824 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1290 276 103 0 0 chr4 92465613 92465652 -63164468 - Lx2B LINE L1 -1085 5915 5877 6 1290 1750 114 14 8 chr4 92465652 92465941 -63164179 + BGLII LTR ERVK 1 315 -126 6 1290 4125 163 49 5 chr4 92465941 92466698 -63163422 + Lx2 LINE L1 6208 6997 0 6 1290 445 346 0 124 chr4 92467199 92467384 -63162736 + RSINE1 SINE B4 4 165 0 6 1290 22 35 0 0 chr4 92467409 92467438 -63162682 + AT_rich Low_complexity Low_complexity 1 29 0 6 1290 915 306 121 44 chr4 92467506 92468050 -63162070 - Lx8 LINE L1 -352 7121 6536 6 1290 250 309 19 87 chr4 92468068 92468171 -63161949 - B4 SINE B4 -52 240 145 6 1290 212 385 143 0 chr4 92468186 92468277 -63161843 - B4A SINE B4 -188 104 1 6 1290 347 253 35 57 chr4 92468740 92468955 -63161165 - L1_Rod LINE L1 -425 5455 5248 6 1290 6261 187 21 6 chr4 92468960 92470920 -63159200 + Lx5 LINE L1 4917 6916 -134 6 1290 3330 25 5 10 chr4 92471237 92471635 -63158485 - MTA_Mm LTR MaLR 0 396 1 6 1290 732 311 89 89 chr4 92471650 92471930 -63158190 - RLTR40 LTR ERVK -228 589 301 6 1290 249 57 0 0 chr4 92471930 92471965 -63158155 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1290 732 311 89 89 chr4 92471965 92472199 -63157921 - RLTR40 LTR ERVK -517 300 75 6 1290 686 341 29 19 chr4 92472251 92472735 -63157385 + L1MA6 LINE L1 5412 5900 -400 6 1290 1139 62 0 7 chr4 92472751 92472896 -63157224 + B1_Mus1 SINE Alu 5 148 0 6 1290 22 56 0 0 chr4 92472981 92473017 -63157103 + AT_rich Low_complexity Low_complexity 1 36 0 6 1290 236 113 0 86 chr4 92473372 92473430 -63156690 + A-rich Low_complexity Low_complexity 3 55 0 6 1290 254 313 101 0 chr4 92474127 92474226 -63155894 + PB1D9 SINE Alu 5 113 -7 6 1290 219 36 0 0 chr4 92474451 92474479 -63155641 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1290 1013 100 0 7 chr4 92474810 92474951 -63155169 + B1_Mm SINE Alu 5 144 -3 6 1290 4989 144 113 6 chr4 92476359 92476411 -63153709 + Lx4A LINE L1 1915 1966 -3911 6 1290 210 37 0 0 chr4 92476411 92476438 -63153682 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1290 4989 144 113 6 chr4 92476438 92476500 -63153620 + Lx4A LINE L1 1967 2046 -3831 6 1290 180 0 0 0 chr4 92476500 92476520 -63153600 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1290 4989 144 113 6 chr4 92476520 92477252 -63152868 + Lx4A LINE L1 2047 2861 -3016 6 1290 996 156 0 0 chr4 92477252 92477432 -63152688 + GA-rich Low_complexity Low_complexity 1 180 0 6 1290 4989 144 113 6 chr4 92477432 92477574 -63152546 + Lx4A LINE L1 2862 3010 -2867 6 1290 34771 52 3 3 chr4 92477575 92483029 -63147091 + L1Md_T LINE L1 41 5589 -297 6 1290 8356 35 2 0 chr4 92483029 92484023 -63146097 + L1Md_T LINE L1 5590 6585 0 6 1290 14332 146 49 45 chr4 92484052 92486278 -63143842 + Lx4A LINE L1 2992 5261 -616 6 1290 964 96 7 0 chr4 92486278 92486414 -63143706 + B1_Mus2 SINE Alu 3 139 -8 6 1290 14332 146 41 35 chr4 92486414 92487277 -63142843 + Lx4A LINE L1 5262 6099 -959 6 1290 4159 209 40 12 chr4 92487279 92488097 -63142023 + RMER13A LTR ERVK 1 841 -19 6 1290 2613 172 30 9 chr4 92488100 92488563 -63141557 + Lx4A LINE L1 6112 6584 -474 6 1290 945 265 60 111 chr4 92488642 92489028 -63141092 - MTE2a LTR MaLR -6 373 8 6 1290 6145 106 28 6 chr4 92489086 92490588 -63139532 + L1VL2 LINE L1 57 1591 -2024 6 1290 4489 119 40 43 chr4 92490578 92491412 -63138708 + L1VL2 LINE L1 2151 2981 -634 6 1290 22 56 0 0 chr4 92491580 92491616 -63138504 + AT_rich Low_complexity Low_complexity 1 36 0 6 1290 255 103 0 0 chr4 92491734 92491773 -63138347 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1290 440 265 53 6 chr4 92491863 92492034 -63138086 - Lx9 LINE L1 0 7644 7466 6 1290 24 0 0 0 chr4 92492645 92492669 -63137451 + AT_rich Low_complexity Low_complexity 1 24 0 6 1290 392 157 11 46 chr4 92492848 92492935 -63137185 - RLTR22_Mur LTR ERVK 0 1848 1765 6 1290 4861 92 3 0 chr4 92492935 92493600 -63136520 + L1_Mus1 LINE L1 5899 6565 -2 6 1290 483 95 0 0 chr4 92493625 92493699 -63136421 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1290 3245 133 19 52 chr4 92493699 92494316 -63135804 - RLTR22_Mur LTR ERVK -1251 597 1 6 1290 477 0 0 0 chr4 92494342 92494395 -63135725 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1290 27 49 0 0 chr4 92495108 92495149 -63134971 + AT_rich Low_complexity Low_complexity 1 41 0 6 1290 1036 184 41 0 chr4 92495161 92495357 -63134763 + Lx4A LINE L1 6165 6368 -690 6 1290 45 34 0 0 chr4 92496220 92496279 -63133841 + AT_rich Low_complexity Low_complexity 1 59 0 6 1290 35 0 0 0 chr4 92498706 92498741 -63131379 + AT_rich Low_complexity Low_complexity 1 35 0 6 1290 334 351 0 11 chr4 92498896 92498991 -63131129 + MIR SINE MIR 19 112 -150 6 1290 590 281 7 20 chr4 92502637 92502786 -63127334 - B1_Mur1 SINE Alu 0 149 3 1 1290 204 250 100 0 chr4 92503637 92503697 -63126423 + MER5A DNA MER1_type 11 76 -113 2 1290 252 0 0 0 chr4 92503730 92503758 -63126362 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1290 1231 314 15 20 chr4 92503803 92504200 -63125920 - Lx6 LINE L1 0 7460 7066 4 1290 1260 298 39 27 chr4 92504183 92505131 -63124989 - L1_Mur3 LINE L1 -7047 665 3 5 1290 396 40 0 0 chr4 92505267 92505317 -63124803 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1290 7817 72 2 0 chr4 92505427 92506752 -63123368 + L1_Mus1 LINE L1 5268 6567 0 7 1290 21 0 0 0 chr4 92508220 92508241 -63121879 + AT_rich Low_complexity Low_complexity 1 21 0 8 1290 3006 302 59 86 chr4 92508254 92509739 -63120381 - Lx5 LINE L1 -19 7031 5587 9 1290 475 235 8 0 chr4 92509823 92509955 -63120165 - Lx9 LINE L1 0 7644 7512 1 1290 1415 280 84 0 chr4 92510050 92510429 -63119691 - Lx5 LINE L1 -6 7044 6634 1 1290 279 204 0 0 chr4 92510430 92510484 -63119636 + HY1 scRNA scRNA 2 55 -57 1 1290 359 102 0 0 chr4 92510488 92510537 -63119583 + Lx9 LINE L1 7139 7187 -457 1 1290 554 306 47 74 chr4 92510966 92511181 -63118939 + MTEa LTR MaLR 1 209 -170 1 1290 423 0 0 0 chr4 92512653 92512700 -63117420 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1290 639 71 0 0 chr4 92513168 92513253 -63116867 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1290 508 265 30 15 chr4 92513750 92513884 -63116236 - B1_Mur1 SINE Alu -1 148 13 1 1290 357 350 17 79 chr4 92514343 92514697 -63115423 + L1ME3A LINE L1 5658 5989 -184 1 1290 313 302 31 20 chr4 92514707 92514805 -63115315 + PB1 SINE Alu 29 127 0 1 1290 1030 264 42 19 chr4 92515046 92515359 -63114761 - Lx6 LINE L1 -20 7440 7121 2 1290 2899 121 9 2 chr4 92515377 92515818 -63114302 + L1_Mus4 LINE L1 6185 6628 -8 2 1290 504 380 16 5 chr4 92515846 92516039 -63114081 - B3 SINE B2 -10 206 12 2 1290 28 0 0 0 chr4 92516576 92516604 -63113516 + AT_rich Low_complexity Low_complexity 1 28 0 2 1290 1602 175 6 7 chr4 92517448 92517744 -63112376 + L1VL1 LINE L1 1 454 -5968 2 1290 14944 174 65 66 chr4 92517744 92522247 -63107873 + L1Md_F LINE L1 277 4842 -1041 2 1290 284 247 148 0 chr4 92522247 92522328 -63107792 + MTD LTR MaLR 100 192 -227 2 1290 14944 174 65 66 chr4 92522328 92523182 -63106938 + L1Md_F LINE L1 4843 5709 -174 2 1290 1909 101 11 7 chr4 92523182 92523462 -63106658 + L1Md_F2 LINE L1 6301 6581 -1 2 1290 377 256 67 82 chr4 92524173 92524441 -63105679 - Lx9 LINE L1 -27 7617 7354 2 1290 234 0 0 0 chr4 92524446 92524472 -63105648 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1290 6742 50 13 0 chr4 92524591 92525433 -63104687 - L1Md_F3 LINE L1 -20 6564 5712 3 1290 1747 296 42 42 chr4 92525453 92526207 -63103913 - Lx9 LINE L1 -323 7321 6568 2 1290 270 309 60 64 chr4 92526235 92526518 -63103602 - RLTR15 LTR ERVK -14 345 64 3 1290 188 34 0 33 chr4 92526633 92526663 -63103457 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1290 1223 167 59 18 chr4 92526783 92527003 -63103117 + RLTR15 LTR ERVK 126 354 -5 3 1290 401 274 41 33 chr4 92527008 92527129 -63102991 - Lx9 LINE L1 -1086 6558 6437 2 1290 23 86 0 0 chr4 92527560 92527618 -63102502 + AT_rich Low_complexity Low_complexity 1 58 0 3 1290 216 0 0 0 chr4 92528560 92528584 -63101536 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1290 299 293 0 12 chr4 92528593 92528676 -63101444 - MLT1D LTR MaLR -384 121 40 3 1290 996 240 33 4 chr4 92528725 92529001 -63101119 - L1M4 LINE L1 -568 5616 5333 3 1290 27 29 0 0 chr4 92529241 92529275 -63100845 + AT_rich Low_complexity Low_complexity 1 34 0 3 1290 44 63 0 0 chr4 92529697 92529776 -63100344 + AT_rich Low_complexity Low_complexity 1 79 0 3 1290 2330 212 9 56 chr4 92529811 92530454 -63099666 - L1_Mur3 LINE L1 -1165 4715 4103 4 1290 504 132 0 0 chr4 92531403 92531486 -63098634 + (CATA)n Simple_repeat Simple_repeat 2 84 0 4 1290 360 338 70 10 chr4 92531618 92531818 -63098302 + B3 SINE B2 5 216 0 4 1290 3120 268 97 22 chr4 92532045 92533150 -63096970 - Lx9 LINE L1 -130 7514 6327 4 1290 429 257 9 0 chr4 92533166 92533271 -63096849 - U6 snRNA snRNA -1 106 1 4 1290 30 0 0 0 chr4 92533282 92533312 -63096808 + AT_rich Low_complexity Low_complexity 1 30 0 4 1290 47 19 0 0 chr4 92534604 92534658 -63095462 + AT_rich Low_complexity Low_complexity 1 54 0 4 1290 6353 152 7 6 chr4 92534658 92535767 -63094353 - Lx3A LINE L1 0 6981 5872 4 1290 354 217 11 2 chr4 92535770 92535864 -63094256 - Lx4B LINE L1 -518 6540 6445 4 1290 1134 105 0 0 chr4 92535936 92536098 -63094022 - Lx3C LINE L1 -1109 5867 5706 4 1290 1716 234 88 32 chr4 92536296 92536724 -63093396 + Lx2B LINE L1 6466 6921 -79 5 161 2767 129 14 7 chr4 92536724 92537154 -63092966 - RLTR10C LTR ERVK -3 433 1 5 1291 1716 234 88 32 chr4 92537154 92537224 -63092896 + Lx2B LINE L1 6922 6992 -8 5 1291 181 155 35 0 chr4 92537703 92537761 -63092359 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 5 1291 2560 45 0 0 chr4 92538805 92539119 -63091001 - L1Md_T LINE L1 0 6582 6269 5 1291 33096 29 0 8 chr4 92539119 92543650 -63086470 - L1Md_T LINE L1 -679 5204 717 5 1291 748 302 83 23 chr4 92544114 92544463 -63085657 + ORR1D2 LTR MaLR 1 370 0 5 1291 839 189 94 143 chr4 92545288 92545701 -63084419 - RLTR9C LTR ERVK 0 393 1 5 1291 28 0 0 0 chr4 92545707 92545735 -63084385 + AT_rich Low_complexity Low_complexity 1 28 0 5 1291 219 103 0 0 chr4 92545926 92545965 -63084155 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1291 426 299 172 50 chr4 92546063 92546563 -63083557 - L1MA4 LINE L1 -395 5905 5345 5 1291 1076 63 35 7 chr4 92546760 92546903 -63083217 + B1_Mm SINE Alu 1 147 0 5 1291 197 98 24 0 chr4 92546904 92546945 -63083175 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 6 1291 275 252 58 10 chr4 92547025 92547129 -63082991 - L1MA4 LINE L1 -1138 5005 4897 5 1291 1085 310 126 29 chr4 92547316 92547576 -63082544 + L1_Mur3 LINE L1 4682 4936 -944 6 1291 416 0 46 15 chr4 92547576 92547641 -63082479 + (TTAAA)n Simple_repeat Simple_repeat 4 70 0 6 1291 1085 310 126 29 chr4 92547641 92548303 -63081817 + L1_Mur3 LINE L1 4937 5692 -188 6 1291 522 0 0 0 chr4 92548396 92548454 -63081666 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1291 243 0 0 0 chr4 92549894 92549921 -63080199 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1291 1125 36 0 0 chr4 92549921 92550058 -63080062 - B1_Mus2 SINE Alu -10 137 1 6 1291 403 176 0 0 chr4 92550479 92550547 -63079573 - L1_Mm LINE L1 -771 5112 5045 6 1291 664 136 0 0 chr4 92550551 92550661 -63079459 - L1_Mur3 LINE L1 -1269 4611 4502 6 1291 6729 129 26 11 chr4 92550655 92551887 -63078233 + L1_Mus4 LINE L1 5375 6636 0 6 1291 1651 230 36 49 chr4 92552410 92552904 -63077216 - RMER6C LTR ERVK 0 690 203 6 1291 3259 272 51 6 chr4 92552937 92553796 -63076324 - Lx5 LINE L1 0 7050 6153 7 1291 1791 123 87 0 chr4 92553796 92554096 -63076024 + IAPEY3_LTR LTR ERVK 1 326 -6 7 1291 36423 92 14 3 chr4 92554104 92560341 -63069779 + IAPEY3-int LTR ERVK 3 6292 -1388 7 1291 5826 86 48 22 chr4 92560321 92561185 -63068935 + IAPEY3-int LTR ERVK 6795 7680 0 7 1291 1765 139 86 0 chr4 92561185 92561486 -63068634 + IAPEY3_LTR LTR ERVK 1 327 -5 7 1291 596 259 49 49 chr4 92561496 92561740 -63068380 - Lx5 LINE L1 -906 6144 5901 7 1291 1063 174 63 25 chr4 92561741 92562014 -63068106 - RMER6C LTR ERVK -468 288 1 7 1291 315 164 0 0 chr4 92562260 92562321 -63067799 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1291 316 322 31 31 chr4 92562655 92562840 -63067280 + L1MC4a LINE L1 7242 7426 -616 7 1291 3315 132 21 0 chr4 92562906 92563436 -63066684 + Lx LINE L1 6114 6654 0 7 1291 565 348 29 0 chr4 92563571 92563775 -63066345 + B3 SINE B2 2 211 -5 7 1291 5498 54 4 0 chr4 92563784 92564487 -63065633 - L1_Mm LINE L1 -994 4889 4184 7 1291 1781 47 0 0 chr4 92564483 92564698 -63065422 + L1Md_F3 LINE L1 5370 5584 -299 7 1291 8171 40 4 3 chr4 92564700 92565693 -63064427 + L1Md_F3 LINE L1 5587 6580 -4 7 1291 235 333 24 12 chr4 92566741 92566823 -63063297 - Lx9 LINE L1 -1101 6543 6461 7 1291 702 127 13 6 chr4 92566923 92567082 -63063038 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 8 1291 2245 269 88 11 chr4 92567192 92567827 -63062293 + Lx6 LINE L1 6776 7459 -1 8 1291 671 112 0 9 chr4 92567838 92567946 -63062174 + (TA)n Simple_repeat Simple_repeat 2 108 0 8 1291 2803 132 26 17 chr4 92567946 92568409 -63061711 + L1_Mus3 LINE L1 6166 6632 -6 8 1291 513 32 0 0 chr4 92568666 92568729 -63061391 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1291 927 243 36 14 chr4 92568739 92569088 -63061032 - Lx9 LINE L1 -1682 5962 5574 7 1291 570 29 0 0 chr4 92569090 92569158 -63060962 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1291 254 132 0 19 chr4 92569265 92569319 -63060801 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1291 777 194 0 0 chr4 92569383 92569543 -63060577 + (TA)n Simple_repeat Simple_repeat 2 161 0 8 1291 525 306 106 31 chr4 92569653 92569974 -63060146 + Lx9 LINE L1 6674 7018 -626 8 1291 456 19 0 0 chr4 92569974 92570027 -63060093 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1291 2499 95 48 52 chr4 92570028 92570428 -63059692 - RLTR9D LTR ERVK -2 401 4 9 1291 363 23 0 0 chr4 92570428 92570472 -63059648 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1291 513 0 0 0 chr4 92570473 92570530 -63059590 + (GA)n Simple_repeat Simple_repeat 2 58 0 9 1291 256 212 61 0 chr4 92570744 92570810 -63059310 + Lx9 LINE L1 7304 7373 -271 8 1291 384 40 0 0 chr4 92570884 92570934 -63059186 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1291 245 135 19 0 chr4 92571075 92571127 -63058993 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1291 642 262 65 14 chr4 92571895 92572112 -63058008 + L1M5 LINE L1 5571 5798 -326 9 1291 274 220 0 33 chr4 92573382 92573401 -63056719 - L1Md_F2 LINE L1 -708 5874 5857 9 1291 3426 118 36 13 chr4 92573401 92573935 -63056185 - Lx LINE L1 -2 6652 6107 9 1291 348 56 8 0 chr4 92573935 92573985 -63056135 - Lx LINE L1 -798 5856 5805 9 1291 1201 67 61 0 chr4 92573981 92574145 -63055975 + L1_Mus4 LINE L1 5646 5819 -817 9 1291 2998 92 0 2 chr4 92576185 92576586 -63053534 - MTB LTR MaLR 0 400 1 1 1291 192 77 0 0 chr4 92577349 92577375 -63052745 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1291 284 0 28 0 chr4 92577547 92577583 -63052537 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1291 202 0 91 0 chr4 92578150 92578183 -63051937 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1291 23 0 0 0 chr4 92578895 92578918 -63051202 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 1184 204 102 31 chr4 92578933 92579226 -63050894 - RLTR46 LTR ERVK -6 314 1 1 1291 229 159 0 0 chr4 92579619 92579663 -63050457 + RLTR20D LTR ERVK 54 97 -454 1 1291 369 78 37 47 chr4 92579664 92579771 -63050349 + T-rich Low_complexity Low_complexity 2 107 0 1 1291 543 293 22 44 chr4 92579771 92579996 -63050124 + RLTR20D LTR ERVK 72 291 -277 1 1291 461 259 34 85 chr4 92579968 92580040 -63050080 + RLTR20D LTR ERVK 411 487 -91 1 1291 702 0 0 0 chr4 92580040 92580118 -63050002 + (TCTCCC)n Simple_repeat Simple_repeat 1 78 0 1 1291 342 0 0 0 chr4 92580124 92580162 -63049958 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1291 461 259 34 85 chr4 92580162 92580259 -63049861 + RLTR20D LTR ERVK 488 578 0 1 1291 474 289 113 44 chr4 92580607 92580951 -63049169 + ORR1D2 LTR MaLR 1 368 -2 1 1291 755 348 44 61 chr4 92581028 92581503 -63048617 - MT2A LTR ERVL -64 469 3 1 1291 192 125 0 0 chr4 92581838 92581870 -63048250 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1291 654 322 29 10 chr4 92582255 92582462 -63047658 + B4A SINE B4 24 234 -58 1 1291 410 341 0 24 chr4 92582460 92582586 -63047534 + RSINE1 SINE B4 5 127 -38 1 1291 227 333 130 9 chr4 92582529 92582644 -63047476 - RMER3D3 LTR ERVK -398 195 67 1 1291 773 193 14 13 chr4 92582704 92582858 -63047262 + B2_Mm2 SINE B2 2 169 -47 1 1291 261 0 0 0 chr4 92582867 92582896 -63047224 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1291 2015 320 80 32 chr4 92582912 92584043 -63046077 + Lx7 LINE L1 5734 6969 -504 1 1291 339 65 0 0 chr4 92584043 92584089 -63046031 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1291 2015 301 48 30 chr4 92584089 92584182 -63045938 + Lx7 LINE L1 6955 7045 -651 1 1291 408 288 41 65 chr4 92584202 92584495 -63045625 + Lx7 LINE L1 7132 7417 -279 1 1291 3818 189 54 74 chr4 92584595 92585609 -63044511 + Lx LINE L1 5654 6647 -7 1 1291 5239 160 58 12 chr4 92585622 92586565 -63043555 + Lx2B LINE L1 6011 6997 -3 1 1291 2560 196 74 19 chr4 92587009 92587785 -63042335 - RLTR13D3 LTR ERVK 0 1114 1 1 1291 4300 79 30 18 chr4 92588025 92588629 -63041491 + RLTR1 LTR ERV1 1 611 -13 1 1291 25 65 0 0 chr4 92588976 92589022 -63041098 + AT_rich Low_complexity Low_complexity 1 46 0 1 1291 23 33 0 0 chr4 92589189 92589219 -63040901 + AT_rich Low_complexity Low_complexity 1 30 0 1 1291 26 64 0 0 chr4 92589591 92589638 -63040482 + AT_rich Low_complexity Low_complexity 1 47 0 1 1291 2429 74 0 3 chr4 92590488 92590813 -63039307 - L1_Mus2 LINE L1 -629 5937 5614 1 1291 4194 99 11 8 chr4 92590813 92591432 -63038688 + L1_Mus2 LINE L1 5943 6563 -3 1 1291 35124 33 12 20 chr4 92591594 92596059 -63034061 + L1Md_A LINE L1 440 4921 -962 1 1291 225 183 46 77 chr4 92596059 92596124 -63033996 - RMER20A LTR ERVK -268 248 186 1 1291 35124 33 12 20 chr4 92596124 92596785 -63033335 + L1Md_A LINE L1 4922 5586 -297 1 1291 8350 31 7 0 chr4 92596785 92597772 -63032348 + L1Md_T LINE L1 5587 6580 -2 1 1291 323 364 72 18 chr4 92598533 92598810 -63031310 + L1ME1 LINE L1 187 478 -5922 1 1291 1389 224 123 15 chr4 92598905 92599231 -63030889 + ORR1B2 LTR MaLR 1 361 -6 1 1291 23 33 0 0 chr4 92599281 92599311 -63030809 + AT_rich Low_complexity Low_complexity 1 30 0 1 1291 21 57 0 0 chr4 92599478 92599513 -63030607 + AT_rich Low_complexity Low_complexity 1 35 0 1 1291 231 279 55 55 chr4 92600667 92600777 -63029343 + L1ME1 LINE L1 1631 1740 -4675 1 1291 2832 197 16 12 chr4 92601081 92601651 -63028469 + L1_Mur2 LINE L1 5105 5676 -201 1 1291 465 325 101 24 chr4 92602036 92602503 -63027617 + L1ME1 LINE L1 4580 5082 -1237 1 1291 1237 229 52 16 chr4 92602579 92602889 -63027231 + Lx4B LINE L1 6672 6992 -66 1 1291 1613 60 9 5 chr4 92603099 92603317 -63026803 + L1_Mus3 LINE L1 6414 6632 -6 1 1291 4719 75 17 29 chr4 92603422 92604082 -63026038 - L1Md_F2 LINE L1 -14 6568 5917 1 1291 387 362 83 46 chr4 92604209 92604640 -63025480 + L1ME1 LINE L1 5884 6330 -22 1 1291 22 0 0 0 chr4 92606743 92606765 -63023355 + AT_rich Low_complexity Low_complexity 1 22 0 1 1291 272 311 74 94 chr4 92607588 92607897 -63022223 + ORR1E LTR MaLR 12 314 -45 1 1291 554 298 66 25 chr4 92608595 92608791 -63021329 - MIR SINE MIR -47 215 12 1 1291 354 289 108 40 chr4 92609705 92609753 -63020367 + B4A SINE B4 66 223 -69 1 1291 676 40 180 0 chr4 92609753 92609853 -63020267 + B1_Mus1 SINE Alu 28 145 -3 1 1291 197 33 33 0 chr4 92609853 92609883 -63020237 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1291 3549 40 0 0 chr4 92610907 92611333 -63018787 - L1Md_T LINE L1 0 6582 6157 1 1291 22 0 0 0 chr4 92611874 92611896 -63018224 + AT_rich Low_complexity Low_complexity 1 22 0 1 1291 326 308 101 29 chr4 92611950 92612157 -63017963 - L1ME3B LINE L1 -353 5887 5666 1 1291 1086 110 0 0 chr4 92612575 92612721 -63017399 - B1_Mus1 SINE Alu 0 148 3 1 1291 251 227 90 39 chr4 92614255 92614333 -63015787 + L1MC LINE L1 2371 2452 -3694 1 1291 2388 151 23 16 chr4 92614371 92614802 -63015318 - L1_Mus4 LINE L1 -6 6630 6197 1 1291 3180 170 29 5 chr4 92614802 92615204 -63014916 - L1_Mur1 LINE L1 -1989 3897 3494 1 1291 192 40 0 0 chr4 92615204 92615229 -63014891 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 1291 3180 170 29 5 chr4 92615229 92615446 -63014674 - L1_Mur1 LINE L1 -2393 3493 3265 1 1291 26621 75 65 39 chr4 92615435 92617391 -63012729 - L1Md_F2 LINE L1 -4 6578 4877 1 1291 7509 37 0 0 chr4 92617391 92618285 -63011835 + L1Md_T LINE L1 5689 6582 0 1 1291 26621 82 92 71 chr4 92618285 92620620 -63009500 - L1Md_F2 LINE L1 -1007 4876 2190 1 1291 3478 42 28 2 chr4 92620620 92621045 -63009075 + RLTR10C LTR ERVK 1 436 0 1 1291 26621 107 67 48 chr4 92621045 92622865 -63007255 - L1Md_F2 LINE L1 -3694 2189 357 1 1291 7258 127 23 4 chr4 92622865 92624245 -63005875 - L1_Mm LINE L1 -2605 3278 1784 1 1291 1961 178 54 2 chr4 92624236 92624663 -63005457 - L1_Mur3 LINE L1 -1467 4413 3965 1 1291 226 267 33 0 chr4 92625007 92625067 -63005053 + B4A SINE B4 4 65 -227 1 1291 884 196 64 0 chr4 92625082 92625255 -63004865 - Lx5 LINE L1 -601 6449 6266 1 1291 3521 219 108 17 chr4 92625383 92626308 -63003812 - Lx2B LINE L1 0 7000 5992 1 1291 516 93 0 0 chr4 92626705 92626780 -63003340 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1291 771 286 16 10 chr4 92627085 92627279 -63002841 + B3 SINE B2 9 203 -13 1 1291 492 210 0 0 chr4 92627284 92627451 -63002669 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1291 215 222 74 0 chr4 92629664 92629718 -63000402 + MIRc SINE MIR 41 98 -170 1 1291 405 221 80 69 chr4 92629827 92630002 -63000118 + Lx7 LINE L1 7516 7692 -4 1 1291 285 307 98 10 chr4 92630079 92630181 -62999939 + B4 SINE B4 32 142 -150 1 1291 368 227 191 5 chr4 92630183 92630382 -62999738 + Lx9 LINE L1 7407 7642 -2 1 1291 344 346 29 43 chr4 92630404 92630543 -62999577 + B4A SINE B4 134 270 -22 1 1291 2240 209 104 29 chr4 92630543 92630868 -62999252 - RMER6C LTR ERVK -26 664 327 1 1291 369 0 0 0 chr4 92630868 92630909 -62999211 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1291 2240 209 104 29 chr4 92630909 92631170 -62998950 - RMER6C LTR ERVK -364 326 34 1 1291 470 61 15 0 chr4 92631224 92631290 -62998830 + (TTTTC)n Simple_repeat Simple_repeat 2 68 0 1 1291 1101 89 0 0 chr4 92631292 92631438 -62998682 - B1_Mm SINE Alu 0 147 2 1 1291 6356 173 38 38 chr4 92631439 92632774 -62997346 - RMER6-int LTR ERVK -1 3176 1843 1 1291 1181 168 0 0 chr4 92632766 92632974 -62997146 + RMER6-int LTR ERVK 1207 1414 -1763 1 1291 6564 152 29 3 chr4 92632990 92633024 -62997096 - RMER6-int LTR ERVK -1349 1828 1795 1 1291 2835 177 56 11 chr4 92633024 92633560 -62996560 - Lx LINE L1 -2 6652 6093 1 1291 6564 152 29 3 chr4 92633560 92634613 -62995507 - RMER6-int LTR ERVK -1383 1794 713 1 1291 2707 144 159 35 chr4 92634613 92634849 -62995271 + RMER6C LTR ERVK 12 260 -430 1 1291 3875 127 57 43 chr4 92634849 92635554 -62994566 + RLTR19B LTR ERVK 1 715 0 1 1291 2707 144 159 35 chr4 92635554 92635921 -62994199 + RMER6C LTR ERVK 261 690 0 1 1291 1342 292 62 44 chr4 92635922 92636696 -62993424 - RMER1B Other Other -415 651 2 1 1291 184 200 67 0 chr4 92636908 92636953 -62993167 - L3 LINE CR1 -1607 2882 2835 1 1291 441 0 0 0 chr4 92637496 92637545 -62992575 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1291 363 262 54 36 chr4 92637553 92637664 -62992456 + Lx9 LINE L1 6881 6993 -651 1 1291 746 194 12 12 chr4 92637866 92638033 -62992087 - Lx2 LINE L1 0 6997 6831 1 1291 1940 115 0 0 chr4 92638035 92638304 -62991816 + Lx2 LINE L1 6547 6815 -182 1 1291 452 167 13 0 chr4 92638305 92638383 -62991737 + Lx LINE L1 6263 6341 -656 1 1291 28 79 0 0 chr4 92638631 92638694 -62991426 + AT_rich Low_complexity Low_complexity 1 63 0 1 1291 23 0 0 0 chr4 92638737 92638760 -62991360 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 2702 68 0 0 chr4 92639568 92639908 -62990212 + L1_Mus1 LINE L1 6218 6557 -10 1 1291 195 42 0 0 chr4 92639908 92639932 -62990188 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1291 268 73 24 0 chr4 92639932 92639973 -62990147 - L1Md_F2 LINE L1 -19 6563 6522 1 1291 24 0 0 0 chr4 92639977 92640001 -62990119 + AT_rich Low_complexity Low_complexity 1 24 0 1 1291 185 94 0 30 chr4 92640001 92640034 -62990086 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1291 2846 134 41 16 chr4 92640087 92640602 -62989518 - L1_Mur2 LINE L1 -1713 4164 3637 1 1291 1168 135 48 5 chr4 92640602 92640810 -62989310 + Lx LINE L1 6426 6642 -12 1 1291 453 312 26 77 chr4 92640869 92640999 -62989121 + Lx8 LINE L1 6301 6418 -1055 1 1291 4399 90 3 6 chr4 92640999 92641628 -62988492 + L1_Mus3 LINE L1 6009 6635 -3 1 1291 453 316 38 85 chr4 92641628 92641793 -62988327 + Lx8 LINE L1 6419 6726 -918 1 1291 22 0 0 0 chr4 92642178 92642200 -62987920 + AT_rich Low_complexity Low_complexity 1 22 0 1 1291 474 18 0 0 chr4 92642217 92642272 -62987848 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1291 1164 271 123 53 chr4 92643152 92643714 -62986406 - MT2B LTR ERVL 0 601 1 1 1291 348 211 0 0 chr4 92643779 92643855 -62986265 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1291 429 321 73 42 chr4 92645800 92645992 -62984128 - B3A SINE B2 -6 210 13 1 1291 213 39 0 0 chr4 92646607 92646633 -62983487 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1291 503 322 45 90 chr4 92648620 92649006 -62981114 - MLT1A LTR MaLR -5 406 16 1 1291 2753 78 0 26 chr4 92650557 92650939 -62979181 + L1Md_F2 LINE L1 6199 6570 -12 1 1291 285 212 219 8 chr4 92651407 92651526 -62978594 - Lx6 LINE L1 0 7460 7317 2 1291 3761 85 30 2 chr4 92651526 92652055 -62978065 + L1_Mus1 LINE L1 6023 6566 -1 2 1291 628 165 28 0 chr4 92652065 92652174 -62977946 + L1_Mur3 LINE L1 5388 5499 -381 2 1291 808 86 156 0 chr4 92652174 92652302 -62977818 + B1_Mus1 SINE Alu 1 148 0 2 1291 4173 47 9 0 chr4 92652325 92652973 -62977147 + L1Md_F2 LINE L1 1 561 -5961 2 1291 35389 35 0 0 chr4 92652993 92658461 -62971659 + L1Md_T LINE L1 25 5589 -297 2 1291 8818 8 3 0 chr4 92658461 92659452 -62970668 + L1Md_T LINE L1 5590 6583 -2 2 1291 26 0 0 0 chr4 92659453 92659479 -62970641 + AT_rich Low_complexity Low_complexity 1 26 0 2 1291 1361 67 0 0 chr4 92659699 92659878 -62970242 - L1Md_F2 LINE L1 -1390 4496 4318 2 1291 8269 62 22 21 chr4 92659878 92661004 -62969116 + L1Md_F2 LINE L1 4462 5588 -298 2 1291 7514 71 3 8 chr4 92661005 92662002 -62968118 + L1Md_F2 LINE L1 5590 6581 -4 2 1291 364 336 57 11 chr4 92662594 92662874 -62967246 - L1M2 LINE L1 -751 5549 5257 2 1291 29 47 0 0 chr4 92663450 92663493 -62966627 + AT_rich Low_complexity Low_complexity 1 43 0 2 1291 186 133 0 0 chr4 92663493 92663523 -62966597 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1291 5430 127 9 12 chr4 92663524 92664371 -62965749 - Lx3A LINE L1 -15 6966 6122 2 1291 3042 14 43 0 chr4 92664371 92664723 -62965397 - IAPLTR1_Mm LTR ERVK 0 367 1 2 161 44730 18 9 1 chr4 92664723 92671123 -62958997 - IAPEz-int LTR ERVK 0 6481 8 2 1292 3052 11 43 0 chr4 92671123 92671475 -62958645 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1292 7479 106 71 13 chr4 92671475 92672924 -62957196 - Lx3A LINE L1 -854 6127 4598 2 1292 1164 246 93 32 chr4 92672924 92673268 -62956852 - ORR1D1 LTR MaLR -9 365 1 2 1292 509 344 10 50 chr4 92673942 92674125 -62955995 + B3A SINE B2 1 179 -19 2 1292 231 36 0 0 chr4 92674125 92674153 -62955967 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1292 509 344 10 50 chr4 92674153 92674171 -62955949 + B3A SINE B2 180 194 -4 2 1292 3391 231 65 47 chr4 92674788 92675676 -62954444 + RMER13B LTR ERVK 5 908 0 2 1292 1290 139 0 5 chr4 92675676 92675878 -62954242 + Lx2 LINE L1 6190 6390 -607 2 1292 2082 138 11 8 chr4 92675866 92676225 -62953895 + Lx3_Mus LINE L1 744 1103 -5881 2 1292 1087 82 0 7 chr4 92676229 92676376 -62953744 + B1_Mus1 SINE Alu 1 146 -2 2 1292 4629 100 28 0 chr4 92676377 92677223 -62952897 + Lx3_Mus LINE L1 5178 6040 -969 2 1292 9059 19 0 0 chr4 92677220 92678273 -62951847 - L1Md_T LINE L1 -508 5375 4323 2 1292 1937 18 0 0 chr4 92678272 92678493 -62951627 + L1Md_T LINE L1 5366 5586 -297 2 1292 8000 52 0 5 chr4 92678493 92679494 -62950626 + L1Md_T LINE L1 5587 6582 0 2 1292 195 325 65 24 chr4 92679941 92680064 -62950056 + MIRb SINE MIR 78 205 -63 2 1292 671 294 12 0 chr4 92680195 92680358 -62949762 - RSINE1 SINE B4 0 165 1 2 1292 5893 126 43 6 chr4 92680744 92681704 -62948416 + Lx3_Mus LINE L1 6007 7001 -8 2 1292 26 50 0 0 chr4 92681753 92681793 -62948327 + AT_rich Low_complexity Low_complexity 1 40 0 2 1292 1481 147 28 8 chr4 92681845 92682098 -62948022 + Lx3B LINE L1 6712 6969 -4 2 1292 431 73 15 0 chr4 92682106 92682174 -62947946 + (TAA)n Simple_repeat Simple_repeat 2 70 0 2 1292 423 0 0 0 chr4 92682330 92682377 -62947743 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1292 1060 81 0 0 chr4 92682377 92682513 -62947607 - B1_Mus1 SINE Alu -10 138 3 2 1292 211 346 0 58 chr4 92684146 92684232 -62945888 + RSINE1 SINE B4 2 82 -83 2 1292 503 181 34 17 chr4 92684603 92684721 -62945399 - Lx6 LINE L1 0 7460 7341 2 1292 227 259 11 23 chr4 92685302 92685389 -62944731 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 1292 1662 16 0 0 chr4 92687805 92687993 -62942127 - B2_Mm1a SINE B2 -4 189 2 2 1292 198 352 43 21 chr4 92688134 92688227 -62941893 - L2c LINE L2 -8 3379 3285 2 1292 989 164 78 46 chr4 92688946 92689163 -62940957 + URR1A DNA MER1_type 3 226 0 2 1292 1917 208 3 14 chr4 92689208 92689579 -62940541 - ORR1B2 LTR MaLR 0 367 1 2 1292 3088 210 140 31 chr4 92689579 92690430 -62939690 - ORR1B2-int LTR MaLR 0 1509 566 2 1292 24 0 0 0 chr4 92690441 92690465 -62939655 + AT_rich Low_complexity Low_complexity 1 24 0 2 1292 422 101 14 0 chr4 92691402 92691471 -62938649 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1292 1629 339 8 35 chr4 92691836 92692379 -62937741 - Lx5 LINE L1 -20 7030 6502 2 1292 4416 159 8 3 chr4 92692379 92693144 -62936976 - Lx LINE L1 -4 6650 5882 2 1292 1629 339 8 35 chr4 92693144 92693197 -62936923 - Lx5 LINE L1 -549 6501 6450 2 1292 194 116 23 0 chr4 92693268 92693311 -62936809 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1292 300 328 19 108 chr4 92693322 92693466 -62936654 - Lx6 LINE L1 -733 6727 6596 2 1292 419 0 20 0 chr4 92693466 92693517 -62936603 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1292 390 149 0 0 chr4 92693517 92693584 -62936536 - Lx2 LINE L1 -590 6407 6341 2 1292 471 218 0 0 chr4 92693598 92693699 -62936421 - Lx4A LINE L1 -13 7045 6945 2 1292 2677 125 14 9 chr4 92693697 92694118 -62936002 - Lx LINE L1 -3 6651 6229 2 1292 3415 155 28 2 chr4 92694119 92694719 -62935401 - Lx2 LINE L1 -583 6414 5799 2 1292 4084 161 66 16 chr4 92694722 92695448 -62934672 - Lx4A LINE L1 -130 6928 6167 2 1292 803 244 17 0 chr4 92695504 92695742 -62934378 + L1_Mur3 LINE L1 5156 5397 -483 2 1292 264 88 0 50 chr4 92695743 92695803 -62934317 + Lx2 LINE L1 6947 6997 0 2 1292 619 410 53 29 chr4 92695864 92696278 -62933842 + MLT2B3 LTR ERVL 76 499 -55 2 1292 288 0 0 0 chr4 92696705 92696737 -62933383 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1292 3891 118 24 2 chr4 92696737 92697316 -62932804 - Lx3_Mus LINE L1 -21 6988 6397 2 1292 816 103 51 0 chr4 92697330 92697447 -62932673 + B2_Mm2 SINE B2 3 125 -70 2 1292 354 23 0 0 chr4 92697713 92697756 -62932364 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1292 40 21 0 0 chr4 92697756 92697803 -62932317 + AT_rich Low_complexity Low_complexity 1 47 0 2 1292 473 326 51 68 chr4 92698432 92698533 -62931587 + B4A SINE B4 2 88 -204 2 1292 1152 137 11 0 chr4 92698533 92698716 -62931404 + B2_Mm1t SINE B2 2 186 -7 2 1292 473 326 51 68 chr4 92698716 92698910 -62931210 + B4A SINE B4 89 292 0 2 1292 249 233 78 52 chr4 92700187 92700264 -62929856 - RSINE1 SINE B4 -12 153 75 2 1292 1097 287 101 25 chr4 92700678 92701187 -62928933 + Lx6 LINE L1 5329 5903 -1557 2 1292 758 262 178 57 chr4 92701167 92702138 -62927982 - L1_Rod LINE L1 -1913 3973 2865 2 1292 397 263 81 25 chr4 92702175 92702335 -62927785 - L1_Rod LINE L1 -3124 2723 2555 2 1292 316 262 12 0 chr4 92702345 92702425 -62927695 - L1_Rod LINE L1 -4239 1608 1528 2 1292 318 309 50 38 chr4 92702495 92702815 -62927305 - L1_Rod LINE L1 -4321 1526 1203 2 1292 243 255 0 0 chr4 92704798 92704849 -62925271 + MLT1A1 LTR MaLR 4 54 -311 2 1292 35124 76 1 14 chr4 92704851 92711014 -62919106 - L1Md_F2 LINE L1 0 6582 505 2 1292 297 383 54 22 chr4 92711021 92711205 -62918915 + MLT1A1 LTR MaLR 20 209 -199 2 1292 1959 216 141 88 chr4 92711253 92711833 -62918287 - RMER19C LTR ERVK 0 611 1 2 1292 10764 146 35 31 chr4 92711833 92713992 -62916128 - MurERV4_19-int LTR ERVK 0 5780 3463 2 1292 1896 200 14 0 chr4 92713995 92714360 -62915760 - MurERV4_19-int LTR ERVK -4240 1540 1171 2 1292 1309 103 39 5 chr4 92714372 92714577 -62915543 - L1_Mus1 LINE L1 0 6567 6356 2 1292 3423 87 0 8 chr4 92714577 92715052 -62915068 + L1_Mus2 LINE L1 5744 6214 -352 2 1292 2650 191 65 9 chr4 92715054 92715593 -62914527 - MurERV4_19-int LTR ERVK -4594 1186 618 2 1292 2014 228 71 104 chr4 92715598 92716230 -62913890 - RMER19C LTR ERVK 0 611 1 2 1292 303 330 106 10 chr4 92716258 92716362 -62913758 - PB1D7 SINE Alu -27 120 7 2 1292 246 353 0 0 chr4 92716304 92716372 -62913748 - B4A SINE B4 -143 149 82 2 1292 248 400 13 0 chr4 92717355 92717430 -62912690 - RSINE1 SINE B4 -8 157 82 2 1292 254 409 26 9 chr4 92717501 92717617 -62912503 - B4A SINE B4 -173 119 2 2 1292 257 283 0 0 chr4 92717874 92717934 -62912186 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1292 581 0 14 0 chr4 92717957 92718026 -62912094 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1292 180 111 0 0 chr4 92719085 92719112 -62911008 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1292 393 99 43 21 chr4 92719113 92719206 -62910914 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 2 1292 972 88 0 0 chr4 92719462 92719598 -62910522 + (GA)n Simple_repeat Simple_repeat 1 136 0 2 1292 227 313 120 63 chr4 92719664 92719855 -62910265 - Charlie15a DNA MER1_type -21 203 2 2 1292 23 33 0 0 chr4 92720111 92720141 -62909979 + AT_rich Low_complexity Low_complexity 1 30 0 2 1292 240 35 0 0 chr4 92721735 92721764 -62908356 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1292 444 86 0 0 chr4 92721803 92721873 -62908247 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1292 1080 82 7 0 chr4 92723296 92723442 -62906678 - B1_Mus1 SINE Alu 0 148 2 2 1292 265 306 10 10 chr4 92723741 92723840 -62906280 + CT-rich Low_complexity Low_complexity 1 99 0 2 1292 740 103 0 8 chr4 92723843 92723960 -62906160 + (TTC)n Simple_repeat Simple_repeat 1 116 0 2 1292 232 355 33 11 chr4 92723998 92724089 -62906031 - B1F1 SINE Alu -45 104 12 2 1292 567 275 17 6 chr4 92724344 92724516 -62905604 + Lx6 LINE L1 7276 7449 -11 2 1292 22 0 0 0 chr4 92724860 92724882 -62905238 + AT_rich Low_complexity Low_complexity 1 22 0 2 1292 358 316 0 0 chr4 92726049 92726144 -62903976 + RSINE1 SINE B4 9 103 -62 2 1292 902 89 15 0 chr4 92726154 92726355 -62903765 + (TATATG)n Simple_repeat Simple_repeat 1 203 0 2 1292 27 0 0 0 chr4 92726988 92727015 -62903105 + AT_rich Low_complexity Low_complexity 1 27 0 2 1292 697 299 80 32 chr4 92727223 92727624 -62902496 - L1_Mur3 LINE L1 -3154 2693 2274 2 1292 21 89 0 0 chr4 92727633 92727689 -62902431 + AT_rich Low_complexity Low_complexity 1 56 0 2 1292 780 202 18 12 chr4 92727822 92727987 -62902133 + Lx3B LINE L1 6802 6967 -6 2 1292 246 315 13 27 chr4 92728124 92728274 -62901846 - L1_Mur3 LINE L1 -3852 2028 1881 2 1292 2620 170 72 6 chr4 92728293 92728791 -62901329 - Lx2B LINE L1 0 7000 6470 2 1292 965 39 0 0 chr4 92728791 92728920 -62901200 - L1Md_T LINE L1 0 6582 6454 2 1292 254 95 0 106 chr4 92728920 92728967 -62901153 - Lx2B LINE L1 -518 6479 6438 2 1292 5806 188 34 6 chr4 92728953 92729011 -62901109 + L1_Mur1 LINE L1 4684 4742 -1144 2 1292 263 28 28 0 chr4 92729011 92729047 -62901073 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1292 5806 188 34 6 chr4 92729047 92730158 -62899962 + L1_Mur1 LINE L1 4743 5886 0 2 1292 238 286 11 56 chr4 92730284 92730373 -62899747 + MLT1H-int LTR MaLR 460 544 -865 2 1292 30 59 0 0 chr4 92730924 92730975 -62899145 + AT_rich Low_complexity Low_complexity 1 51 0 2 1292 784 299 97 29 chr4 92731879 92732230 -62897890 + MTE2b LTR MaLR 1 375 -4 2 1292 35854 73 5 7 chr4 92732257 92738630 -62891490 - L1Md_F3 LINE L1 -1 6583 227 2 1292 390 94 153 0 chr4 92739675 92739760 -62890360 - Lx9 LINE L1 -7 7637 7540 2 1292 278 297 66 59 chr4 92739877 92740013 -62890107 - MER57D LTR ERV1 -133 278 142 2 1292 1373 224 26 32 chr4 92740097 92740443 -62889677 + ORR1A1 LTR MaLR 3 346 0 3 1292 348 83 0 0 chr4 92742581 92742629 -62887491 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1292 35 78 0 0 chr4 92742772 92742849 -62887271 + AT_rich Low_complexity Low_complexity 1 77 0 3 1292 235 294 58 10 chr4 92743047 92743150 -62886970 - L1M3 LINE L1 -268 5903 5796 3 1292 1362 281 111 41 chr4 92743151 92743766 -62886354 + RCHARR1 DNA MER1_type 3 660 -314 3 1292 1099 291 79 9 chr4 92743836 92744176 -62885944 + ORR1D2 LTR MaLR 1 364 -6 3 1292 390 190 30 68 chr4 92744310 92744682 -62885438 + (TATAA)n Simple_repeat Simple_repeat 1 357 0 3 1292 524 155 20 20 chr4 92745457 92745556 -62884564 - B2_Mm2 SINE B2 -13 182 84 3 1292 2520 121 30 2 chr4 92745556 92745954 -62884166 + Lx3_Mus LINE L1 6601 7009 0 3 1292 2590 111 53 17 chr4 92745972 92746383 -62883737 - Lx3A LINE L1 -8 6973 6548 3 1292 935 87 14 0 chr4 92746426 92746564 -62883556 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 3 1292 2742 102 12 25 chr4 92746683 92747086 -62883034 - MTB LTR MaLR 0 400 3 3 1292 569 365 24 8 chr4 92747237 92747483 -62882637 + MTE2b LTR MaLR 25 274 -105 3 1292 22 0 0 0 chr4 92747956 92747978 -62882142 + AT_rich Low_complexity Low_complexity 1 22 0 3 1292 387 13 11 123 chr4 92747985 92748164 -62881956 + (TA)n Simple_repeat Simple_repeat 1 159 0 3 1292 576 0 7 137 chr4 92748165 92748444 -62881676 + (CATATA)n Simple_repeat Simple_repeat 1 242 0 3 1292 477 124 0 91 chr4 92748376 92748701 -62881419 + (TA)n Simple_repeat Simple_repeat 1 295 0 3 1292 1002 208 40 27 chr4 92750577 92750997 -62879123 + L1_Mur2 LINE L1 908 1413 -4464 3 1292 595 263 98 60 chr4 92750986 92751338 -62878782 + Lx3B LINE L1 6573 7041 -17 3 1292 224 30 30 0 chr4 92751356 92751389 -62878731 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 3 1292 5772 181 59 3 chr4 92751391 92753144 -62876976 + Lx5 LINE L1 4989 6862 -188 3 1292 586 265 86 47 chr4 92753144 92753386 -62876734 - ORR1E LTR MaLR -119 251 1 3 1292 351 277 121 67 chr4 92754319 92754559 -62875561 + B4A SINE B4 1 253 -39 3 1292 956 79 62 28 chr4 92754589 92754733 -62875387 - B1_Mur3 SINE Alu 0 149 1 3 1292 246 284 136 45 chr4 92755227 92755382 -62874738 - MLT1D LTR MaLR -2 503 335 3 1292 373 275 51 90 chr4 92755522 92755678 -62874442 - MLT1D LTR MaLR -353 152 3 3 1292 186 209 0 0 chr4 92755779 92755822 -62874298 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1292 212 217 81 32 chr4 92756063 92756125 -62873995 + PB1D10 SINE Alu 52 116 -1 3 1292 33 0 0 0 chr4 92757100 92757133 -62872987 + AT_rich Low_complexity Low_complexity 1 33 0 3 1292 1295 186 56 68 chr4 92757306 92757720 -62872400 - RMER17C LTR ERVK -1 409 1 3 1292 1827 47 13 4 chr4 92757747 92757984 -62872136 - L1_Mus3 LINE L1 -452 6186 5948 3 1292 3157 89 11 38 chr4 92757984 92758462 -62871658 + L1_Mus3 LINE L1 6174 6638 0 3 1292 1162 100 0 11 chr4 92758474 92758656 -62871464 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1292 410 188 0 10 chr4 92758944 92759046 -62871074 + CT-rich Low_complexity Low_complexity 1 101 0 3 1292 227 281 97 35 chr4 92759453 92759597 -62870523 - MIRb SINE MIR -30 238 86 3 1292 348 295 59 23 chr4 92760832 92761002 -62869118 + MIRb SINE MIR 36 212 -56 3 1292 513 0 0 0 chr4 92761101 92761158 -62868962 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1292 370 318 137 34 chr4 92761885 92762178 -62867942 + RMER5 LTR ERV1 164 486 -48 3 1292 1055 108 0 20 chr4 92762182 92762333 -62867787 + B1_Mus1 SINE Alu 1 148 0 3 1292 21 89 0 0 chr4 92762611 92762667 -62867453 + AT_rich Low_complexity Low_complexity 1 56 0 3 1292 1485 232 89 23 chr4 92762963 92763356 -62866764 + MTD LTR MaLR 1 419 0 3 1292 23 33 0 0 chr4 92765132 92765162 -62864958 + AT_rich Low_complexity Low_complexity 1 30 0 3 1292 260 351 35 63 chr4 92766888 92767012 -62863108 - MLT1J LTR MaLR -146 366 246 3 1292 756 0 0 0 chr4 92767012 92767096 -62863024 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 3 1292 260 351 35 63 chr4 92767096 92767114 -62863006 - MLT1J LTR MaLR -267 245 228 3 1292 316 357 35 84 chr4 92767135 92767337 -62862783 - MLT1J LTR MaLR -253 259 68 3 1292 339 340 92 3 chr4 92767591 92767768 -62862352 - MLT1A0 LTR MaLR 0 374 182 3 1292 391 289 59 24 chr4 92768627 92768797 -62861323 + L1MA8 LINE L1 5982 6157 -134 3 1292 243 361 15 22 chr4 92768986 92769122 -62860998 + B1F1 SINE Alu 14 148 -1 3 1292 1292 266 35 14 chr4 92769362 92769728 -62860392 - ORR1D1 LTR MaLR 0 374 1 3 1292 243 234 138 15 chr4 92769896 92770026 -62860094 + L1MD LINE L1 3398 3543 -2603 3 1292 25 31 0 0 chr4 92770035 92770067 -62860053 + AT_rich Low_complexity Low_complexity 1 32 0 3 1292 207 0 0 0 chr4 92770132 92770155 -62859965 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1292 314 316 64 12 chr4 92770249 92770422 -62859698 + L1M5 LINE L1 3974 4155 -1991 3 1292 882 332 95 44 chr4 92770420 92770733 -62859387 + Lx8 LINE L1 6333 6646 -827 3 1292 4358 14 2 2 chr4 92770733 92771226 -62858894 + MT2_Mm LTR ERVL 1 493 0 3 1292 9584 16 0 0 chr4 92771228 92772326 -62857794 + MTA_Mm-int LTR MaLR 1 1098 0 3 1292 3456 18 5 0 chr4 92772326 92772720 -62857400 + MTA_Mm LTR MaLR 1 396 0 3 1292 882 332 95 44 chr4 92772720 92773055 -62857065 + Lx8 LINE L1 6647 7017 -456 3 1292 300 83 0 40 chr4 92773055 92773105 -62857015 + B3 SINE B2 2 49 -167 3 1292 1321 64 0 11 chr4 92773105 92773280 -62856840 - L1Md_F3 LINE L1 -177 6405 6233 3 1292 895 62 0 23 chr4 92773280 92773411 -62856709 + L1Md_F3 LINE L1 6443 6570 -14 3 1292 746 234 86 0 chr4 92773434 92773609 -62856511 + B3 SINE B2 27 216 0 3 1292 8565 134 47 7 chr4 92774078 92775980 -62854140 - Lx2 LINE L1 0 6997 5011 3 1292 309 279 110 26 chr4 92776843 92777030 -62853090 + Lx8 LINE L1 6988 7214 -259 3 1292 228 184 0 0 chr4 92777085 92777134 -62852986 + L1MD LINE L1 5643 5691 -668 3 1292 230 135 18 55 chr4 92777808 92777863 -62852257 + A-rich Low_complexity Low_complexity 4 56 0 3 1292 280 328 24 8 chr4 92778083 92778206 -62851914 + Lx8 LINE L1 7105 7229 -244 3 1292 775 183 221 6 chr4 92778222 92778403 -62851717 + URR1A DNA MER1_type 7 226 0 3 1292 702 204 143 6 chr4 92778480 92778648 -62851472 + URR1A DNA MER1_type 7 197 -29 3 1292 1919 189 15 71 chr4 92778695 92779104 -62851016 + ORR1B1 LTR MaLR 1 386 -8 3 1292 276 268 120 30 chr4 92780147 92780247 -62849873 + ID_B1 SINE B4 82 190 -34 3 1292 1566 49 0 0 chr4 92780817 92781002 -62849118 + B2_Mm1t SINE B2 1 185 -8 3 1292 821 56 0 0 chr4 92781085 92781193 -62848927 + B1_Mm SINE Alu 40 147 0 3 1292 24 77 0 0 chr4 92781301 92781353 -62848767 + AT_rich Low_complexity Low_complexity 1 52 0 3 1292 327 179 0 0 chr4 92781485 92781552 -62848568 + CT-rich Low_complexity Low_complexity 2 68 0 3 1292 328 171 0 24 chr4 92781556 92781640 -62848480 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1292 23 33 0 0 chr4 92782133 92782163 -62847957 + AT_rich Low_complexity Low_complexity 1 30 0 3 1292 1003 38 0 0 chr4 92782360 92782492 -62847628 - L1Md_T LINE L1 -2 6580 6449 3 1292 639 257 83 17 chr4 92782587 92782828 -62847292 - L1_Mur3 LINE L1 -3246 2634 2378 3 1292 1283 241 150 72 chr4 92782835 92783318 -62846802 - L1_Mur3 LINE L1 -3760 2120 1574 3 1292 245 75 25 0 chr4 92783318 92783358 -62846762 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1292 1283 241 150 72 chr4 92783358 92783538 -62846582 - L1_Mur3 LINE L1 -4307 1573 1423 3 1292 381 93 0 0 chr4 92783538 92783592 -62846528 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1292 1283 241 150 72 chr4 92783592 92783637 -62846483 - L1_Mur3 LINE L1 -4458 1422 1346 3 1292 444 51 0 0 chr4 92783637 92783696 -62846424 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1292 1283 241 150 72 chr4 92783696 92783794 -62846326 - L1_Mur3 LINE L1 -4535 1345 1249 3 1292 245 263 84 8 chr4 92783840 92783959 -62846161 - L1_Mur3 LINE L1 -6496 1232 1105 3 1292 29875 18 0 0 chr4 92783915 92787414 -62842706 + L1Md_A LINE L1 2512 5977 -297 3 1292 8247 39 1 0 chr4 92787414 92788409 -62841711 + L1Md_A LINE L1 5978 6973 0 3 1292 226 338 21 41 chr4 92788502 92788647 -62841473 - L1_Mur3 LINE L1 -6685 1027 886 3 1292 712 316 19 116 chr4 92788913 92789285 -62840835 + MTE2b LTR MaLR 1 336 -43 3 1292 249 378 36 63 chr4 92789346 92789569 -62840551 + B4A SINE B4 2 218 -74 3 1292 1145 313 34 29 chr4 92789679 92790097 -62840023 + Lx8 LINE L1 6192 6611 -862 3 1292 483 371 88 6 chr4 92790093 92790456 -62839664 + Lx8 LINE L1 6713 7105 -368 3 1292 457 284 52 7 chr4 92790562 92790697 -62839423 + MTEb LTR MaLR 55 195 -184 3 1292 371 191 17 17 chr4 92790909 92791026 -62839094 - Lx9 LINE L1 0 7644 7528 3 1292 3368 108 0 0 chr4 92791262 92791725 -62838395 - L1_Mm LINE L1 -15 5868 5406 3 1292 897 69 0 51 chr4 92791725 92791863 -62838257 + L1_Mus1 LINE L1 6436 6566 -1 3 1292 234 395 30 23 chr4 92792078 92792210 -62837910 + MER82 DNA MER2_type 514 646 -7 3 1292 30 0 0 0 chr4 92792311 92792341 -62837779 + AT_rich Low_complexity Low_complexity 1 30 0 3 1292 22 56 0 0 chr4 92792435 92792471 -62837649 + AT_rich Low_complexity Low_complexity 1 36 0 3 1292 240 222 12 12 chr4 92792586 92792668 -62837452 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1292 312 243 14 14 chr4 92792668 92792739 -62837381 - HAL1-3A_ME LINE L1 -830 2028 1958 3 1292 219 336 22 59 chr4 92794273 92794317 -62835803 - MIR SINE MIR -109 153 110 3 1292 1589 268 79 55 chr4 92794317 92794914 -62835206 + RMER19C LTR ERVK 1 611 0 3 1292 219 336 22 59 chr4 92794914 92795005 -62835115 - MIR SINE MIR -153 109 23 3 1292 441 0 0 0 chr4 92797106 92797155 -62832965 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1292 587 165 172 8 chr4 92797369 92797482 -62832638 + B1_Mur4 SINE Alu 9 142 -8 3 1292 603 0 0 0 chr4 92797482 92797549 -62832571 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3 1292 989 249 107 8 chr4 92797579 92797842 -62832278 + RMER1C Other Other 686 974 -368 3 1292 891 221 105 9 chr4 92797900 92798128 -62831992 + RMER1C Other Other 1089 1338 -4 3 1292 249 83 0 0 chr4 92798160 92798196 -62831924 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 1292 3941 150 25 3 chr4 92798197 92798845 -62831275 - Lx4A LINE L1 -3 7055 6394 3 161 1868 151 0 4 chr4 92798847 92799169 -62830951 + L1_Mur2 LINE L1 5128 5473 -691 3 1293 23 33 0 0 chr4 92799350 92799380 -62830740 + AT_rich Low_complexity Low_complexity 1 30 0 3 1293 475 271 16 63 chr4 92799432 92799558 -62830562 - B1_Mur2 SINE Alu -7 142 23 3 1293 1326 4 33 0 chr4 92800415 92800655 -62829465 + (TAGA)n Simple_repeat Simple_repeat 1 247 0 3 1293 463 88 22 11 chr4 92800778 92800870 -62829250 + L1Md_F3 LINE L1 6490 6582 -2 4 1293 386 158 24 0 chr4 92801079 92801161 -62828959 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 4 1293 219 69 0 0 chr4 92803347 92803376 -62826744 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1293 236 152 51 0 chr4 92803376 92803435 -62826685 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 4 1293 7242 128 12 3 chr4 92804290 92805437 -62824683 + L1_Mur1 LINE L1 4386 5543 -343 4 1293 4553 108 3 1 chr4 92805471 92806141 -62823979 - L1_Mur1 LINE L1 -453 5433 4763 4 1293 270 286 0 0 chr4 92806283 92806360 -62823760 - Lx8 LINE L1 -616 6857 6781 4 1293 206 98 49 0 chr4 92807600 92807641 -62822479 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 4 1293 410 254 11 9 chr4 92807641 92807758 -62822362 - B1_Mur1 SINE Alu 0 149 7 4 1293 1022 332 161 12 chr4 92807782 92808523 -62821597 - Lx8 LINE L1 -6 7467 6617 4 1293 366 243 29 23 chr4 92809426 92809599 -62820521 + (CAGAGA)n Simple_repeat Simple_repeat 6 179 0 4 1293 220 254 0 15 chr4 92810115 92810251 -62819869 + CT-rich Low_complexity Low_complexity 3 136 0 4 1293 1126 89 0 0 chr4 92810789 92810935 -62819185 + B1_Mus1 SINE Alu 2 147 -1 4 1293 352 332 95 26 chr4 92811168 92811357 -62818763 - L1MEc LINE L1 -6143 257 56 4 1293 238 344 0 0 chr4 92812081 92812145 -62817975 - ID_B1 SINE B4 -5 219 156 4 1293 1085 262 99 73 chr4 92812768 92813039 -62817081 - MTD LTR MaLR -14 405 120 4 1293 1457 96 28 77 chr4 92813039 92813287 -62816833 + L1_Mus2 LINE L1 6331 6566 0 4 1293 1085 262 99 73 chr4 92813287 92813410 -62816710 - MTD LTR MaLR -300 119 1 4 1293 895 304 60 22 chr4 92813416 92813511 -62816609 - MTEa LTR MaLR -44 335 240 4 1293 705 24 0 0 chr4 92813511 92813594 -62816526 + (GA)n Simple_repeat Simple_repeat 1 83 0 4 1293 895 304 60 22 chr4 92813594 92813817 -62816303 - MTEa LTR MaLR -140 239 5 4 1293 351 0 0 0 chr4 92813873 92813912 -62816208 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1293 306 0 0 0 chr4 92815038 92815072 -62815048 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1293 378 0 0 0 chr4 92815072 92815113 -62815007 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1293 641 304 0 0 chr4 92815143 92815301 -62814819 - Lx6 LINE L1 -263 7197 7040 4 1293 2317 237 122 36 chr4 92815316 92815978 -62814142 - Lx6 LINE L1 -567 6893 6175 4 1293 5629 175 46 31 chr4 92815957 92817250 -62812870 - L1_Mur3 LINE L1 -2075 3805 2493 4 1293 2952 207 24 13 chr4 92817310 92818201 -62811919 - L1_Mur3 LINE L1 -3968 1912 1015 4 1293 279 360 63 79 chr4 92818334 92818524 -62811596 + MER21B LTR ERV1 608 794 -69 4 1293 33716 104 10 11 chr4 92819311 92825667 -62804453 - L1Md_F2 LINE L1 -12 6570 238 4 1293 525 99 0 0 chr4 92826024 92826105 -62804015 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 4 1293 300 53 0 0 chr4 92826115 92826153 -62803967 + (TCC)n Simple_repeat Simple_repeat 3 40 0 4 1293 409 331 68 23 chr4 92826259 92826392 -62803728 + RSINE1 SINE B4 5 143 -22 4 1293 236 292 0 0 chr4 92826409 92826474 -62803646 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1293 30 27 0 0 chr4 92826498 92826535 -62803585 + AT_rich Low_complexity Low_complexity 1 37 0 4 1293 1848 116 51 13 chr4 92827025 92827340 -62802780 + L1_Mus3 LINE L1 6307 6633 -5 4 1293 26 0 0 0 chr4 92828581 92828607 -62801513 + AT_rich Low_complexity Low_complexity 1 26 0 4 1293 27 49 0 0 chr4 92828638 92828679 -62801441 + AT_rich Low_complexity Low_complexity 1 41 0 4 1293 2599 249 61 32 chr4 92828684 92829407 -62800713 - Lx2B LINE L1 -10 6990 6247 4 1293 766 298 8 31 chr4 92829449 92829705 -62800415 - MER2 DNA MER2_type -1 344 95 4 1293 370 94 15 15 chr4 92830143 92830208 -62799912 + (TTG)n Simple_repeat Simple_repeat 2 66 0 4 1293 500 306 0 7 chr4 92830634 92830779 -62799341 + B1_Mur1 SINE Alu 5 148 -1 4 1293 626 262 178 98 chr4 92831484 92831749 -62798371 + ORR1D2 LTR MaLR 48 342 -28 4 1293 340 320 64 58 chr4 92832187 92832343 -62797777 - RSINE1 SINE B4 -7 158 2 4 1293 1777 253 65 17 chr4 92833073 92833853 -62796267 + Lx7 LINE L1 5358 6165 -1531 4 1293 4742 16 0 0 chr4 92833913 92834458 -62795662 - L1_Mm LINE L1 -314 5569 5025 4 1293 7386 31 0 0 chr4 92834458 92835325 -62794795 + L1Md_A LINE L1 5716 6582 0 4 1293 249 337 12 12 chr4 92835375 92835459 -62794661 + Lx7 LINE L1 6947 7030 -666 4 1293 2153 286 38 67 chr4 92835449 92836328 -62793792 + Lx7 LINE L1 6510 7362 -334 4 1293 378 0 0 0 chr4 92836520 92836562 -62793558 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1293 180 0 0 0 chr4 92836902 92836922 -62793198 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1293 874 124 20 0 chr4 92836977 92837130 -62792990 - L1_Mus3 LINE L1 -7 6631 6476 4 1293 1913 206 147 14 chr4 92838469 92838987 -62791133 + Lx9 LINE L1 6903 7489 -155 4 1293 320 64 0 21 chr4 92839029 92839077 -62791043 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1293 4444 74 8 10 chr4 92839114 92839717 -62790403 + L1Md_F2 LINE L1 5981 6582 0 4 1293 807 118 14 7 chr4 92840104 92840249 -62789871 + (TCTCC)n Simple_repeat Simple_repeat 3 148 0 4 1293 218 289 122 9 chr4 92840596 92840711 -62789409 + L3 LINE CR1 3599 3726 -763 4 1293 206 294 158 77 chr4 92840887 92841108 -62789012 + L3 LINE CR1 3925 4163 -326 4 1293 483 73 0 0 chr4 92841904 92841972 -62788148 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 4 1293 444 216 0 0 chr4 92842084 92842186 -62787934 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 4 1293 1670 312 44 22 chr4 92842248 92842297 -62787823 - Lx9 LINE L1 -683 6961 6918 4 1293 3050 65 94 2 chr4 92842297 92842732 -62787388 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1293 1670 312 44 22 chr4 92842732 92843269 -62786851 - Lx9 LINE L1 -727 6917 6362 4 1293 22 56 0 0 chr4 92843339 92843375 -62786745 + AT_rich Low_complexity Low_complexity 1 36 0 4 1293 378 0 0 0 chr4 92844236 92844278 -62785842 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1293 4567 180 37 7 chr4 92844879 92845824 -62784296 + L1_Mur2 LINE L1 2077 3049 -2828 4 1293 251 281 110 0 chr4 92846173 92846319 -62783801 - L1MD3 LINE L1 -10 7985 7824 4 1293 1145 120 0 7 chr4 92846604 92846906 -62783214 + (GAAA)n Simple_repeat Simple_repeat 1 300 0 4 1293 6799 154 19 19 chr4 92846906 92847609 -62782511 + L1_Mur2 LINE L1 3041 3746 -2131 4 1293 1085 132 23 11 chr4 92847609 92847785 -62782335 + B2_Mm2 SINE B2 1 178 -17 4 1293 6799 154 19 19 chr4 92847785 92848368 -62781752 + L1_Mur2 LINE L1 3747 4326 -1551 4 1293 3941 221 68 25 chr4 92848360 92849403 -62780717 + Lx2B LINE L1 5913 7000 0 4 1293 493 331 0 0 chr4 92849435 92849556 -62780564 + B3 SINE B2 56 176 -40 4 1293 3535 192 41 6 chr4 92849561 92850225 -62779895 + RLTR17 LTR ERVK 6 692 0 4 1293 203 0 37 0 chr4 92852902 92852929 -62777191 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 4 1293 2801 169 33 119 chr4 92853086 92853152 -62776968 - RMER6A LTR ERVK 0 756 690 4 1293 4772 54 18 8 chr4 92853152 92853751 -62776369 - RLTR1D LTR ERV1 0 605 1 4 1293 2801 169 33 119 chr4 92853751 92854450 -62775670 - RMER6A LTR ERVK -67 689 58 4 1293 1087 107 17 0 chr4 92854539 92854716 -62775404 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1293 21 36 0 0 chr4 92855411 92855439 -62774681 + AT_rich Low_complexity Low_complexity 1 28 0 4 1293 2439 284 35 39 chr4 92857102 92857345 -62772775 + Lx3_Mus LINE L1 4868 5109 -768 4 1293 5424 126 8 11 chr4 92857345 92858189 -62771931 + Lx LINE L1 5809 6650 -4 4 1293 2799 173 18 21 chr4 92858189 92858996 -62771124 + Lx3_Mus LINE L1 5110 5920 -1089 4 1293 225 0 0 0 chr4 92858996 92859021 -62771099 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1293 6746 114 15 54 chr4 92859021 92860159 -62769961 + Lx3_Mus LINE L1 5908 7001 -8 4 1293 232 250 0 0 chr4 92860285 92860337 -62769783 + L1M1 LINE L1 5594 5645 -655 4 1293 444 37 0 0 chr4 92860344 92860398 -62769722 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1293 25 0 0 0 chr4 92860590 92860615 -62769505 + AT_rich Low_complexity Low_complexity 1 25 0 4 1293 1114 157 144 32 chr4 92861697 92861947 -62768173 - Lx LINE L1 -17 6637 6360 4 1293 569 295 60 35 chr4 92862580 92862780 -62767340 - MER21B LTR ERV1 -423 440 236 4 1293 1344 267 18 101 chr4 92862788 92863225 -62766895 + MTD LTR MaLR 6 406 -13 4 1293 714 12 0 0 chr4 92863976 92864059 -62766061 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 4 1293 23 78 0 0 chr4 92864636 92864687 -62765433 + AT_rich Low_complexity Low_complexity 1 51 0 4 1293 462 36 0 0 chr4 92864748 92864804 -62765316 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1293 288 0 0 0 chr4 92864804 92864835 -62765285 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1293 1506 233 57 6 chr4 92865908 92866133 -62763987 + ORR1D1 LTR MaLR 3 228 -146 4 1293 381 22 0 0 chr4 92866133 92866179 -62763941 + (CCTG)n Simple_repeat Simple_repeat 1 46 0 4 1293 1506 233 57 6 chr4 92866179 92866307 -62763813 + ORR1D1 LTR MaLR 229 372 -2 4 1293 623 297 73 12 chr4 92870308 92870667 -62759453 + MTD LTR MaLR 1 419 0 4 1293 2103 235 40 42 chr4 92871180 92871708 -62758412 + RMER15 LTR ERVL 48 574 -1 4 1293 453 278 34 64 chr4 92872062 92872247 -62757873 - MLT1D LTR MaLR -21 484 277 4 1293 570 122 0 0 chr4 92872393 92872491 -62757629 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1293 693 344 54 0 chr4 92872506 92872747 -62757373 - B4A SINE B4 -32 260 7 4 1293 405 319 81 109 chr4 92872794 92873153 -62756967 + ORR1E LTR MaLR 6 354 -5 4 1293 189 0 0 0 chr4 92874098 92874119 -62756001 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1293 2367 253 84 9 chr4 92874589 92875336 -62754784 - RCHARR1 DNA MER1_type 0 974 172 4 1293 225 377 0 0 chr4 92875600 92875677 -62754443 + ID4 SINE ID 7 83 0 4 1293 220 375 0 0 chr4 92876808 92876872 -62753248 + ID4_ SINE ID 14 77 -6 4 1293 1246 176 14 0 chr4 92877021 92877242 -62752878 + URR1B DNA MER1_type 1 224 -1 4 1293 284 264 43 54 chr4 92877333 92877425 -62752695 + PB1D10 SINE Alu 26 116 -1 4 1293 409 365 66 70 chr4 92877598 92877732 -62752388 - L1MEc LINE L1 -5785 615 480 4 1293 327 105 0 0 chr4 92877732 92877789 -62752331 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 4 1293 507 126 0 0 chr4 92877796 92877891 -62752229 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1293 409 365 66 70 chr4 92877891 92878351 -62751769 - L1MEc LINE L1 -5927 473 15 4 1293 3605 74 0 8 chr4 92880422 92880896 -62749224 - L1_Mus1 LINE L1 -3 6564 6095 5 1293 2788 90 22 2 chr4 92881430 92881840 -62748280 - L1_Mus3 LINE L1 -5 6633 6216 5 1293 1035 317 42 34 chr4 92882118 92882474 -62747646 + MTD LTR MaLR 47 405 -14 5 1293 710 47 19 0 chr4 92883065 92883171 -62746949 - L1Md_F2 LINE L1 -19 6563 6456 5 1293 2209 172 186 54 chr4 92884449 92884698 -62745422 + RMER6C LTR ERVK 2 347 -343 5 1293 570 29 0 0 chr4 92884698 92884766 -62745354 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1293 2209 172 186 54 chr4 92884766 92885125 -62744995 + RMER6C LTR ERVK 348 689 -1 5 1293 247 346 102 30 chr4 92885181 92885403 -62744717 + MTEb LTR MaLR 53 257 -122 5 1293 27 49 0 0 chr4 92885949 92885990 -62744130 + AT_rich Low_complexity Low_complexity 1 41 0 5 1293 349 324 70 55 chr4 92886514 92886713 -62743407 + MIR SINE MIR 46 247 -15 5 1293 23 0 0 0 chr4 92886747 92886770 -62743350 + AT_rich Low_complexity Low_complexity 1 23 0 5 1293 341 200 12 0 chr4 92887092 92887172 -62742948 - Lx9 LINE L1 -6 7638 7558 5 1293 4195 52 7 7 chr4 92890677 92890788 -62739332 - L1Md_F2 LINE L1 0 6582 6473 5 1293 282 29 0 0 chr4 92890788 92890823 -62739297 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1293 4195 52 7 7 chr4 92890823 92891251 -62738869 - L1Md_F2 LINE L1 -110 6472 6044 5 1293 322 239 65 0 chr4 92891351 92891443 -62738677 + Lx7 LINE L1 7206 7303 -393 5 1293 26 50 0 0 chr4 92891685 92891725 -62738395 + AT_rich Low_complexity Low_complexity 1 40 0 5 1293 608 77 0 11 chr4 92891772 92891864 -62738256 + (GGA)n Simple_repeat Simple_repeat 3 93 0 5 1293 187 311 54 108 chr4 92893428 92893576 -62736544 - MIRm SINE MIR -118 158 19 5 1293 2025 63 19 0 chr4 92893796 92894065 -62736055 + L1Md_F3 LINE L1 6310 6583 -1 5 1293 26 30 0 0 chr4 92894091 92894124 -62735996 + AT_rich Low_complexity Low_complexity 1 33 0 5 1293 17686 87 4 13 chr4 92894128 92897327 -62732793 - L1Md_F2 LINE L1 -5 6577 3409 5 1293 2634 98 10 5 chr4 92897325 92897723 -62732397 + L1Md_F2 LINE L1 3021 3420 -2463 5 1293 8185 163 1 2 chr4 92897792 92899126 -62730994 - Lx2B LINE L1 -2 6998 5666 5 1293 243 0 0 0 chr4 92899127 92899154 -62730966 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1293 529 206 92 35 chr4 92899154 92899295 -62730825 + B1_Mur4 SINE Alu 2 150 0 5 1293 27 29 0 0 chr4 92899943 92899977 -62730143 + AT_rich Low_complexity Low_complexity 1 34 0 5 1293 644 135 0 9 chr4 92901211 92901323 -62728797 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1293 333 89 0 0 chr4 92901323 92901368 -62728752 - HAL1-3A_ME LINE L1 -846 2012 1968 5 1293 24 32 0 0 chr4 92901801 92901832 -62728288 + AT_rich Low_complexity Low_complexity 1 31 0 5 1293 224 284 85 38 chr4 92903779 92903885 -62726235 + MIR SINE MIR 152 262 0 5 1293 1023 171 15 29 chr4 92903945 92904150 -62725970 + Lx3B LINE L1 6771 6972 -1 5 1293 21 0 0 0 chr4 92904151 92904172 -62725948 + AT_rich Low_complexity Low_complexity 1 21 0 5 1293 243 0 0 0 chr4 92904236 92904263 -62725857 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 5 1293 250 47 70 0 chr4 92904322 92904365 -62725755 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 5 1293 1422 280 21 36 chr4 92904567 92904952 -62725168 - MTE2b LTR MaLR 0 379 1 5 1293 464 319 71 0 chr4 92905558 92905727 -62724393 + B3A SINE B2 2 182 -16 5 1293 5960 119 13 1 chr4 92906403 92908033 -62722087 + L1VL1 LINE L1 196 1848 -1850 5 1293 15683 101 14 1 chr4 92908040 92911087 -62719033 + L1_Mus3 LINE L1 3541 6631 -7 5 1293 324 0 0 0 chr4 92911115 92911151 -62718969 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1293 435 68 0 0 chr4 92912178 92912237 -62717883 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1293 477 130 47 27 chr4 92913689 92913839 -62716281 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 5 1293 480 86 0 0 chr4 92913844 92913914 -62716206 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1293 561 329 129 53 chr4 92913978 92914241 -62715879 - B4A SINE B4 -8 284 2 5 1293 22 0 0 0 chr4 92914265 92914287 -62715833 + AT_rich Low_complexity Low_complexity 1 22 0 5 1293 894 293 25 83 chr4 92915352 92915581 -62714539 - MER67C LTR ERV1 -309 402 171 5 1293 210 37 0 0 chr4 92915581 92915608 -62714512 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1293 894 293 25 83 chr4 92915608 92915773 -62714347 - MER67C LTR ERV1 -541 170 31 5 1293 478 286 90 17 chr4 92915863 92916041 -62714079 - Lx6 LINE L1 -25 7435 7245 5 1293 396 0 0 0 chr4 92917176 92917220 -62712900 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 1293 210 229 21 0 chr4 92917270 92917318 -62712802 - MIR SINE MIR -36 226 178 5 1293 374 178 8 33 chr4 92917658 92917780 -62712340 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 5 1293 215 61 30 0 chr4 92919730 92919763 -62710357 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1293 604 274 59 0 chr4 92920250 92920454 -62709666 + B3 SINE B2 1 216 0 5 1293 561 13 39 0 chr4 92920915 92920993 -62709127 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 5 1293 342 0 0 0 chr4 92921040 92921078 -62709042 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 1293 708 315 93 25 chr4 92921079 92921518 -62708602 - RMER5 LTR ERV1 -23 511 43 5 1293 24 0 0 0 chr4 92921652 92921676 -62708444 + AT_rich Low_complexity Low_complexity 1 24 0 5 1293 379 299 70 35 chr4 92921721 92921863 -62708257 + B1F1 SINE Alu 3 149 0 5 1293 30 0 0 0 chr4 92921981 92922011 -62708109 + AT_rich Low_complexity Low_complexity 1 30 0 5 1293 23 0 0 0 chr4 92922630 92922653 -62707467 + AT_rich Low_complexity Low_complexity 1 23 0 5 1293 348 350 86 31 chr4 92922917 92923074 -62707046 + L1M5 LINE L1 2416 2579 -3567 5 1293 236 30 0 29 chr4 92923074 92923108 -62707012 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1293 348 350 86 31 chr4 92923108 92923277 -62706843 + L1M5 LINE L1 2580 2760 -3386 5 1293 30807 99 6 5 chr4 92924551 92929891 -62700229 + L1Md_F2 LINE L1 239 5586 -297 5 161 7215 86 3 3 chr4 92929891 92930880 -62699240 + L1Md_F2 LINE L1 5587 6575 -7 5 1294 711 112 0 0 chr4 92931355 92931462 -62698658 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 1294 387 301 0 0 chr4 92932120 92932266 -62697854 + CT-rich Low_complexity Low_complexity 1 146 0 5 1294 421 314 17 45 chr4 92934008 92934185 -62695935 - ORR1E LTR MaLR -127 232 61 5 1294 309 245 135 19 chr4 92934164 92934268 -62695852 + MLT1J2 LTR MaLR 331 446 -2 5 1294 201 148 15 62 chr4 92935297 92935362 -62694758 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 5 1294 1061 101 35 35 chr4 92936807 92936981 -62693139 - BGLII LTR ERVK 0 421 248 5 1294 198 308 17 93 chr4 92937222 92937340 -62692780 + MIRm SINE MIR 81 189 -87 5 1294 396 0 0 0 chr4 92937561 92937605 -62692515 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1294 963 208 87 0 chr4 92937621 92937828 -62692292 + URR1B DNA MER1_type 1 225 0 5 1294 1762 315 35 34 chr4 92937829 92938542 -62691578 + Lx9 LINE L1 6480 7193 -451 5 1294 22 35 0 0 chr4 92939284 92939313 -62690807 + AT_rich Low_complexity Low_complexity 1 29 0 5 1294 833 304 54 0 chr4 92939318 92939542 -62690578 + Lx5 LINE L1 6805 7040 -10 5 1294 314 229 12 71 chr4 92939670 92939839 -62690281 + RMER17A LTR ERVK 323 481 -270 5 1294 5229 91 3 1 chr4 92942041 92942767 -62687353 - L1Md_F2 LINE L1 0 6582 5856 5 1294 32852 86 5 6 chr4 92942766 92948002 -62682118 - L1Md_A LINE L1 -237 5646 416 5 1294 23 33 0 0 chr4 92948394 92948424 -62681696 + AT_rich Low_complexity Low_complexity 1 30 0 5 1294 3574 108 10 2 chr4 92951163 92951685 -62678435 - L1_Mus4 LINE L1 -3 6633 6108 5 1294 571 70 42 0 chr4 92953288 92953373 -62676747 - L1_Mus2 LINE L1 -267 5916 5793 5 1294 5275 67 7 32 chr4 92953373 92954087 -62676033 + L1_Mus2 LINE L1 5871 6566 0 5 1294 24 53 0 0 chr4 92955550 92955588 -62674532 + AT_rich Low_complexity Low_complexity 1 38 0 5 1294 1016 173 10 10 chr4 92955991 92956295 -62673825 + GA-rich Low_complexity Low_complexity 1 304 0 5 1294 1739 168 10 0 chr4 92958027 92958330 -62671790 - Lx5 LINE L1 -971 6079 5774 5 1294 3243 217 28 25 chr4 92958330 92959000 -62671120 + Lx5 LINE L1 6117 6788 -262 5 1294 387 0 0 0 chr4 92959154 92959197 -62670923 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1294 3836 119 9 14 chr4 92959661 92960230 -62669890 - Lx2 LINE L1 -14 6983 6418 5 1294 255 323 19 39 chr4 92960790 92960893 -62669227 - MLT1A1 LTR MaLR -4 404 304 5 1294 1234 260 0 29 chr4 92961191 92961472 -62668648 - MTD LTR MaLR -139 280 8 5 1294 2648 184 56 271 chr4 92961700 92962850 -62667270 + RMER19B LTR ERVK 1 902 0 5 1294 201 338 14 14 chr4 92963292 92963364 -62666756 - L2b LINE L2 0 3375 3304 5 1294 4582 141 108 7 chr4 92964403 92965265 -62664855 + RMER17B LTR ERVK 10 958 0 5 1294 336 262 0 12 chr4 92965805 92965886 -62664234 + ID4_ SINE ID 3 82 -1 5 1294 465 19 0 0 chr4 92966510 92966564 -62663556 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1294 311 209 14 43 chr4 92968240 92968310 -62661810 - B3A SINE B2 -121 77 10 5 1294 200 143 0 28 chr4 92969010 92969046 -62661074 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1294 25 0 0 0 chr4 92969354 92969379 -62660741 + AT_rich Low_complexity Low_complexity 1 25 0 5 1294 21 36 0 0 chr4 92969629 92969657 -62660463 + AT_rich Low_complexity Low_complexity 1 28 0 5 1294 404 332 45 45 chr4 92969921 92970120 -62660000 + MLT1D LTR MaLR 272 470 -35 5 1294 670 245 13 26 chr4 92970277 92970432 -62659688 - ORR1C2 LTR MaLR 0 384 232 5 1294 2195 206 80 10 chr4 92970474 92970633 -62659487 - MTC-int LTR MaLR -714 544 370 5 1294 573 88 10 10 chr4 92970633 92970736 -62659384 - L1Md_F3 LINE L1 0 6584 6482 5 1294 2195 206 80 10 chr4 92970736 92971077 -62659043 - MTC-int LTR MaLR -889 369 10 5 1294 1840 194 83 3 chr4 92971077 92971464 -62658656 - MTC LTR MaLR -3 418 1 5 1294 474 344 6 43 chr4 92971464 92971628 -62658492 + B3A SINE B2 41 198 0 5 1294 311 372 37 47 chr4 92971760 92971867 -62658253 + PB1D10 SINE Alu 1 106 -11 5 1294 22 0 0 0 chr4 92971868 92971890 -62658230 + AT_rich Low_complexity Low_complexity 1 22 0 6 1294 192 329 62 85 chr4 92972088 92972264 -62657856 - MIR SINE MIR -34 228 57 6 1294 190 29 88 0 chr4 92973067 92973101 -62657019 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 1294 293 183 0 0 chr4 92974518 92974578 -62655542 - Lx3C LINE L1 -37 6939 6880 6 1294 2782 245 23 58 chr4 92974578 92975409 -62654711 - RMER13B LTR ERVK -19 889 88 6 1294 1316 105 0 5 chr4 92975409 92975601 -62654519 - B2_Mm2 SINE B2 0 195 5 6 1294 2905 81 0 42 chr4 92975601 92976011 -62654109 + L1Md_F2 LINE L1 6099 6491 -91 6 1294 352 296 33 59 chr4 92976011 92976179 -62653941 - RMER13B LTR ERVK -468 174 3 6 1294 4381 152 62 15 chr4 92976180 92976990 -62653130 - Lx3C LINE L1 -183 6793 5946 6 1294 2622 162 71 20 chr4 92976975 92977467 -62652653 - L1_Mur1 LINE L1 -133 5753 5237 6 1294 922 305 29 21 chr4 92977520 92977801 -62652319 + B4 SINE B4 2 284 -8 6 1294 441 0 0 0 chr4 92977960 92978009 -62652111 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1294 1426 258 97 11 chr4 92978461 92978841 -62651279 - MTC LTR MaLR -3 418 6 6 1294 185 228 51 34 chr4 92979249 92979308 -62650812 + MIRc SINE MIR 166 225 -43 6 1294 21 0 0 0 chr4 92979364 92979385 -62650735 + AT_rich Low_complexity Low_complexity 1 21 0 6 1294 472 364 49 69 chr4 92979999 92980406 -62649714 + MLT1A1 LTR MaLR 10 408 0 6 1294 234 191 0 0 chr4 92980415 92980462 -62649658 + (CATA)n Simple_repeat Simple_repeat 1 47 0 6 1294 468 0 0 0 chr4 92980468 92980520 -62649600 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1294 642 275 18 55 chr4 92980535 92980754 -62649366 + B3 SINE B2 1 211 -5 6 1294 253 313 12 24 chr4 92981492 92981577 -62648543 + MER33 DNA MER1_type 11 94 -230 6 1294 874 321 52 23 chr4 92982137 92982484 -62647636 + ORR1E LTR MaLR 3 359 0 6 1294 222 316 0 0 chr4 92982812 92982869 -62647251 - ID4_ SINE ID -24 59 3 6 1294 315 191 0 0 chr4 92982881 92982949 -62647171 + (TTG)n Simple_repeat Simple_repeat 2 69 0 6 1294 1033 286 78 6 chr4 92984239 92984590 -62645530 - MTEb-int LTR MaLR -1190 390 14 6 1294 947 305 133 12 chr4 92984590 92984928 -62645192 - MTEb LTR MaLR 0 379 1 6 1294 438 293 44 22 chr4 92985039 92985175 -62644945 + B1_Mur3 SINE Alu 11 149 0 6 1294 306 204 132 53 chr4 92985331 92985445 -62644675 - Lx4B LINE L1 -1 7057 6935 6 1294 311 143 0 0 chr4 92985441 92985497 -62644623 - Lx LINE L1 -649 6005 5950 6 1294 1015 201 143 20 chr4 92985854 92986132 -62643988 - MTC LTR MaLR -76 345 48 6 1294 22739 174 38 16 chr4 92986132 92990799 -62639321 - Lx2 LINE L1 -25 6972 2214 6 1294 198 0 0 0 chr4 92990799 92990821 -62639299 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1294 22739 186 27 47 chr4 92990821 92992497 -62637623 - Lx2 LINE L1 -3673 2213 574 6 1294 375 200 0 14 chr4 92992497 92992568 -62637552 - MTC LTR MaLR -351 70 1 6 1294 303 301 118 54 chr4 92992698 92992884 -62637236 + MLT1A LTR MaLR 1 198 -176 6 1294 221 0 0 33 chr4 92992949 92992979 -62637141 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1294 1090 80 0 0 chr4 92992979 92993116 -62637004 - B1_Mus1 SINE Alu -10 138 2 6 1294 255 281 0 0 chr4 92993147 92993204 -62636916 - B3A SINE B2 -139 59 3 6 1294 192 152 15 29 chr4 92993216 92993284 -62636836 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1294 245 91 45 0 chr4 92993793 92993837 -62636283 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 6 1294 462 49 0 0 chr4 92993840 92993901 -62636219 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1294 4068 98 7 9 chr4 92993958 92994523 -62635597 - LTRIS2 LTR ERV1 0 564 1 6 1294 1351 228 8 158 chr4 92994631 92995125 -62634995 - RLTR25B LTR ERVK 0 1103 684 6 1294 1542 180 117 6 chr4 92995150 92995475 -62634645 - RLTR17 LTR ERVK -326 366 6 6 1294 1419 175 115 69 chr4 92995483 92996050 -62634070 + RMER3D-int LTR ERVK 1498 2090 -752 6 1294 2718 184 78 17 chr4 92996053 92996633 -62633487 - RLTR25B LTR ERVK -411 617 3 6 1294 192 97 0 0 chr4 92996789 92996820 -62633300 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1294 604 112 11 0 chr4 92996946 92997035 -62633085 + B1_Mus2 SINE Alu 58 147 0 6 1294 24 77 0 0 chr4 92997035 92997087 -62633033 + AT_rich Low_complexity Low_complexity 1 52 0 6 1294 192 97 0 0 chr4 92997334 92997365 -62632755 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1294 282 311 0 53 chr4 92997504 92997599 -62632521 - MLT1A1 LTR MaLR -315 93 4 6 1294 593 259 21 35 chr4 92997897 92998041 -62632079 + B1_Mur1 SINE Alu 8 149 0 6 1294 1140 75 0 0 chr4 92998907 92999053 -62631067 + B1_Mm SINE Alu 2 147 0 6 1294 198 0 0 0 chr4 92999053 92999075 -62631045 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1294 865 64 0 0 chr4 92999281 92999391 -62630729 - B1_Mus2 SINE Alu -12 135 26 6 1294 373 274 29 10 chr4 93000375 93000478 -62629642 + PB1D10 SINE Alu 10 114 -3 1 1294 22 35 0 0 chr4 93000955 93000984 -62629136 + AT_rich Low_complexity Low_complexity 1 29 0 2 1294 261 282 0 25 chr4 93001963 93002083 -62628037 + C-rich Low_complexity Low_complexity 3 119 0 3 1294 25 0 0 0 chr4 93002148 93002173 -62627947 + GC_rich Low_complexity Low_complexity 1 25 0 4 1294 541 215 0 62 chr4 93003463 93003607 -62626513 + ID_B1 SINE B4 78 212 -12 5 1294 902 71 8 0 chr4 93003481 93003608 -62626512 + B1_Mm SINE Alu 9 136 -11 6 1294 219 36 0 0 chr4 93003608 93003636 -62626484 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1294 270 56 0 0 chr4 93003910 93003946 -62626174 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1294 941 206 44 29 chr4 93004041 93004246 -62625874 - B3 SINE B2 -1 215 8 9 1294 22 0 0 0 chr4 93005014 93005036 -62625084 + AT_rich Low_complexity Low_complexity 1 22 0 1 1294 2642 156 22 14 chr4 93005088 93005583 -62624537 - Lx LINE L1 0 6654 6156 1 1294 1927 54 0 0 chr4 93005583 93005824 -62624296 - Lx LINE L1 -710 5944 5704 1 1294 1185 255 26 39 chr4 93006143 93006453 -62623667 + MTC LTR MaLR 116 421 0 1 1294 290 286 88 39 chr4 93006458 93006560 -62623560 + MLT2B3 LTR ERVL 441 547 -7 1 1294 249 253 82 24 chr4 93008346 93008431 -62621689 - MER3 DNA MER1_type -63 146 57 1 1294 942 278 107 55 chr4 93008703 93009048 -62621072 + ORR1D2 LTR MaLR 6 370 0 1 1294 814 241 137 15 chr4 93009067 93009370 -62620750 + MTD LTR MaLR 61 405 -14 1 1294 5449 234 46 14 chr4 93011409 93012674 -62617446 - Lx6 LINE L1 -50 7646 5971 1 1294 426 79 0 0 chr4 93012674 93012737 -62617383 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1294 2439 170 32 28 chr4 93012737 93013283 -62616837 - Lx6 LINE L1 -1490 5970 5417 1 1294 1320 174 190 56 chr4 93013286 93013422 -62616698 + L1_Mur3 LINE L1 4902 5033 -847 1 1294 3895 140 65 18 chr4 93013422 93014144 -62615976 + RMER6A LTR ERVK 1 756 0 2 1294 1320 174 190 56 chr4 93014144 93014219 -62615901 + L1_Mur3 LINE L1 5034 5112 -768 1 1294 2838 152 49 25 chr4 93014219 93014771 -62615349 - Lx2B LINE L1 -5 6995 6431 2 1294 1320 174 190 56 chr4 93014771 93014955 -62615165 + L1_Mur3 LINE L1 5113 5347 -533 1 1294 496 126 26 51 chr4 93014955 93015072 -62615048 + L1_Mus3 LINE L1 6523 6636 -2 2 1294 1320 174 190 56 chr4 93015072 93015106 -62615014 + L1_Mur3 LINE L1 5348 5389 -491 1 1294 390 345 127 73 chr4 93016270 93016736 -62613384 - LTR48B LTR ERV1 0 644 154 2 1294 1030 66 0 21 chr4 93016829 93016969 -62613151 + Lx LINE L1 6239 6375 -279 2 1294 358 346 87 33 chr4 93016999 93017274 -62612846 - B4A SINE B4 0 292 3 2 1294 737 165 7 57 chr4 93018579 93018720 -62611400 - B1_Mm SINE Alu 0 147 14 2 1294 4002 70 0 2 chr4 93018990 93019509 -62610611 + L1Md_F2 LINE L1 6065 6582 0 2 1294 201 146 0 0 chr4 93021074 93021122 -62608998 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 2 1294 1063 62 13 40 chr4 93021123 93021273 -62608847 - B1_Mus2 SINE Alu -1 146 1 2 1294 1449 49 38 0 chr4 93021273 93021457 -62608663 - B2_Mm2 SINE B2 -3 192 1 3 1294 429 104 0 0 chr4 93021485 93021562 -62608558 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 3 1294 482 0 0 17 chr4 93021563 93021622 -62608498 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1294 831 290 41 4 chr4 93021644 93021890 -62608230 - B4A SINE B4 -36 256 2 3 1294 434 307 123 91 chr4 93022318 93022594 -62607526 + B4 SINE B4 6 290 -2 3 1294 211 175 0 34 chr4 93022623 93022682 -62607438 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1294 645 289 73 20 chr4 93022725 93023082 -62607038 + L1_Mur3 LINE L1 3907 4282 -1598 3 1294 292 247 97 0 chr4 93023082 93023175 -62606945 - ORR1D1 LTR MaLR -1 383 282 3 1294 757 185 41 47 chr4 93023188 93023358 -62606762 - ORR1D1 LTR MaLR -66 308 140 3 1294 1406 40 6 0 chr4 93023407 93023584 -62606536 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1294 195 42 0 0 chr4 93023594 93023618 -62606502 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 3 1294 781 264 36 47 chr4 93023632 93023994 -62606126 + L1M2 LINE L1 4416 4773 -1370 4 1294 289 233 238 50 chr4 93026525 93026706 -62603414 + B3 SINE B2 2 216 0 4 1294 23 0 0 0 chr4 93026900 93026923 -62603197 + AT_rich Low_complexity Low_complexity 1 23 0 4 1294 593 329 96 27 chr4 93026938 93027523 -62602597 + L1MC4a LINE L1 6356 6980 -902 4 1294 295 324 111 59 chr4 93027766 93028019 -62602101 - RMER15 LTR ERVL -17 558 293 4 1294 236 71 48 0 chr4 93028350 93028392 -62601728 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1294 275 315 10 73 chr4 93028475 93028571 -62601549 + B1F1 SINE Alu 2 91 -58 4 1294 344 304 92 35 chr4 93028607 93028924 -62601196 + L1MC4a LINE L1 7547 7881 -1 4 1294 369 319 9 38 chr4 93029464 93029585 -62600535 - B1F SINE Alu 0 120 3 4 1294 217 283 57 0 chr4 93030113 93030166 -62599954 + MIRm SINE MIR 217 272 -4 4 1294 2803 87 14 12 chr4 93030543 93030963 -62599157 + BGLII LTR ERVK 1 421 0 4 1294 281 222 111 0 chr4 93031733 93031805 -62598315 + MER44D DNA MER2_type 19 98 -607 5 1294 218 151 19 19 chr4 93033414 93033468 -62596652 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 5 1294 198 0 0 0 chr4 93033768 93033790 -62596330 + (CAA)n Simple_repeat Simple_repeat 3 24 0 5 1294 588 14 0 0 chr4 93034320 93034389 -62595731 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1294 450 263 17 17 chr4 93034396 93034570 -62595550 + L1_Mm LINE L1 4317 4490 -1393 5 1294 414 0 0 0 chr4 93034635 93034681 -62595439 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1294 511 260 0 20 chr4 93034699 93034848 -62595272 + Lx8 LINE L1 4695 4840 -1040 5 1294 841 144 155 0 chr4 93034845 93034920 -62595200 + Lx LINE L1 6442 6538 -116 5 1294 180 111 0 0 chr4 93034920 93034947 -62595173 + (TGAG)n Simple_repeat Simple_repeat 2 28 0 5 1294 841 144 155 0 chr4 93034947 93035052 -62595068 + Lx LINE L1 6539 6649 -5 5 1294 1017 322 72 75 chr4 93035083 93035976 -62594144 + Lx8 LINE L1 4854 5751 -129 5 1294 1060 153 0 26 chr4 93035976 93036170 -62593950 + Lx LINE L1 6458 6646 -8 5 1294 1017 302 48 13 chr4 93036170 93036390 -62593730 + Lx8 LINE L1 5752 5975 -1669 5 1294 227 167 18 18 chr4 93036635 93036690 -62593430 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 6 1294 378 0 0 0 chr4 93036766 93036808 -62593312 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1294 270 0 0 0 chr4 93036808 93036838 -62593282 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1294 2322 311 141 16 chr4 93036840 93037972 -62592148 + Lx8 LINE L1 6200 7473 0 5 1294 263 264 23 11 chr4 93037987 93038075 -62592045 + GA-rich Low_complexity Low_complexity 3 91 0 6 1294 21 0 0 0 chr4 93038409 93038430 -62591690 + AT_rich Low_complexity Low_complexity 1 21 0 6 1294 1149 82 0 0 chr4 93039277 93039424 -62590696 - B1_Mm SINE Alu 0 147 1 6 1294 24 0 0 0 chr4 93040675 93040699 -62589421 + AT_rich Low_complexity Low_complexity 1 24 0 6 1294 238 252 25 11 chr4 93041010 93041116 -62589004 + L1ME3A LINE L1 5294 5400 -762 6 1294 481 326 94 24 chr4 93041191 93041574 -62588546 + L1ME3A LINE L1 5579 5988 -185 6 1294 396 252 22 65 chr4 93041809 93041976 -62588144 - MLT1A0 LTR MaLR -27 440 251 6 1294 449 260 22 38 chr4 93041977 93042161 -62587959 + L1MA4 LINE L1 4520 4700 -1443 6 1294 284 330 0 0 chr4 93042158 93042261 -62587859 + L1MA4 LINE L1 5834 5936 -364 6 1294 335 332 82 72 chr4 93042530 93042738 -62587382 + MLT1A1 LTR MaLR 15 224 -184 7 1294 945 311 88 23 chr4 93042751 93044135 -62585985 - L1MEe LINE L1 -3112 3733 2194 7 1294 25 0 0 0 chr4 93044411 93044436 -62585684 + AT_rich Low_complexity Low_complexity 1 25 0 7 1294 244 312 75 0 chr4 93045168 93045261 -62584859 + Lx7 LINE L1 7581 7680 -16 7 1294 1457 231 44 28 chr4 93045650 93046011 -62584109 + ORR1B2 LTR MaLR 1 367 0 7 1294 261 107 39 26 chr4 93046059 93046136 -62583984 + A-rich Low_complexity Low_complexity 3 80 0 7 1294 6793 132 62 12 chr4 93046703 93048463 -62581657 + Lx2 LINE L1 4770 6643 -354 7 1294 1316 149 0 5 chr4 93048463 93048686 -62581434 + Lx2 LINE L1 6775 6996 -1 7 1294 2659 263 121 8 chr4 93050220 93051078 -62579042 + RCHARR1 DNA MER1_type 14 968 -6 7 1294 1865 239 14 19 chr4 93051160 93051586 -62578534 - Lx6 LINE L1 -23 7437 7014 7 1294 1901 153 42 0 chr4 93052289 93052597 -62577523 - ORR1A4 LTR MaLR -8 321 1 7 1294 8382 33 1 2 chr4 93053054 93054374 -62575746 - L1Md_F2 LINE L1 -12 6570 5252 8 1294 196 373 58 26 chr4 93054575 93054765 -62575355 - MIR SINE MIR -65 197 2 8 1294 856 308 28 90 chr4 93055552 93055952 -62574168 - MTEa LTR MaLR -2 377 3 8 1294 557 330 40 4 chr4 93055961 93056186 -62573934 - LTR50 LTR ERVL -120 675 443 8 1294 316 175 0 0 chr4 93056281 93056338 -62573782 - ORR1A4 LTR MaLR -39 290 234 8 1294 210 258 0 0 chr4 93056343 93056405 -62573715 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 8 1294 849 194 0 0 chr4 93056404 93056584 -62573536 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 1294 291 28 0 0 chr4 93056687 93056723 -62573397 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1294 324 0 0 0 chr4 93056781 93056817 -62573303 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1294 1790 203 20 41 chr4 93056832 93057018 -62573102 - RLTR14 LTR ERV1 0 382 197 8 1294 2018 121 18 56 chr4 93057018 93057360 -62572760 - ORR1A4 LTR MaLR 0 329 1 8 1294 1790 203 20 41 chr4 93057360 93057563 -62572557 - RLTR14 LTR ERV1 -186 196 1 8 1294 205 149 43 0 chr4 93059159 93059206 -62570914 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 9 1294 392 216 80 0 chr4 93059222 93059310 -62570810 - B1F1 SINE Alu -51 98 4 9 1294 1652 189 38 27 chr4 93059387 93059756 -62570364 - ORR1D1 LTR MaLR -1 373 1 9 1294 21 0 0 0 chr4 93061070 93061091 -62569029 + AT_rich Low_complexity Low_complexity 1 21 0 9 1295 1629 40 0 5 chr4 93061136 93061336 -62568784 - L1_Mus1 LINE L1 -674 5893 5695 9 1295 5303 68 7 1 chr4 93061336 93062027 -62568093 + L1_Mus1 LINE L1 5873 6567 0 9 1295 865 308 43 36 chr4 93062491 93062936 -62567184 - L1MA4 LINE L1 -375 5925 5478 9 1295 234 311 75 9 chr4 93062998 93063105 -62567015 - Tigger6a DNA MER2_type -462 621 508 9 1295 840 298 74 17 chr4 93063170 93063522 -62566598 - Tigger6a DNA MER2_type -711 372 1 9 1295 462 36 0 0 chr4 93063931 93063987 -62566133 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1295 5007 104 17 26 chr4 93064821 93065603 -62564517 - L1_Mus3 LINE L1 -13 6625 5851 9 1295 1602 219 100 8 chr4 93066785 93067154 -62562966 - MTD LTR MaLR -5 414 12 9 1295 543 296 74 98 chr4 93067998 93068324 -62561796 + RMER15 LTR ERVL 220 537 -38 1 1295 13111 170 21 17 chr4 93068867 93071892 -62558228 + L1VL4 LINE L1 752 3797 -2089 1 1295 4185 198 79 4 chr4 93071892 93072692 -62557428 - RMER13A LTR ERVK 0 860 1 1 1295 1982 161 2 59 chr4 93072692 93073101 -62557019 + L1VL4 LINE L1 3783 4168 -1709 1 1295 3606 118 23 123 chr4 93073132 93073952 -62556168 - RMER17A LTR ERVK -13 738 1 1 1295 1720 156 3 0 chr4 93073952 93074241 -62555879 + L1VL4 LINE L1 4158 4447 -1430 1 1295 1656 197 71 8 chr4 93074244 93074612 -62555508 + Lx3C LINE L1 6584 6974 -2 1 1295 24 0 0 0 chr4 93074666 93074690 -62555430 + AT_rich Low_complexity Low_complexity 1 24 0 1 1295 3792 58 0 4 chr4 93075344 93075830 -62554290 + L1Md_F2 LINE L1 5102 5585 -298 1 1295 7528 69 3 9 chr4 93075831 93076821 -62553299 + L1Md_F2 LINE L1 5587 6570 -12 1 1295 477 0 0 0 chr4 93077561 93077614 -62552506 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1295 240 35 0 0 chr4 93078454 93078483 -62551637 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1295 893 222 225 19 chr4 93079106 93079413 -62550707 - ORR1D2 LTR MaLR 0 370 1 1 1295 23 0 0 0 chr4 93080314 93080337 -62549783 + AT_rich Low_complexity Low_complexity 1 23 0 1 1295 275 141 51 0 chr4 93080979 93081057 -62549063 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1295 28 0 0 0 chr4 93081114 93081142 -62548978 + AT_rich Low_complexity Low_complexity 1 28 0 1 1295 516 72 0 0 chr4 93081640 93081709 -62548411 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1295 707 258 13 0 chr4 93081857 93082016 -62548104 - MTE2b LTR MaLR -14 365 205 1 1295 1113 69 0 0 chr4 93082249 93082393 -62547727 + B1_Mus1 SINE Alu 2 145 -3 1 1295 180 0 0 0 chr4 93082393 93082413 -62547707 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1295 245 75 25 0 chr4 93082481 93082521 -62547599 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1295 391 312 66 20 chr4 93082686 93082882 -62547238 - B3 SINE B2 -10 206 2 1 1295 278 262 24 0 chr4 93083114 93083198 -62546922 - MLT1A1 LTR MaLR -1 407 322 1 1295 1141 264 90 16 chr4 93083282 93083605 -62546515 - MTD LTR MaLR -41 378 32 1 1295 702 253 45 6 chr4 93084179 93084358 -62545762 + B4A SINE B4 105 290 -2 1 1295 230 29 0 56 chr4 93084527 93084563 -62545557 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1295 212 120 20 0 chr4 93084638 93084688 -62545432 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1295 483 63 0 0 chr4 93084688 93084751 -62545369 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1295 24 32 0 0 chr4 93084862 93084893 -62545227 + AT_rich Low_complexity Low_complexity 1 31 0 1 1295 766 316 108 10 chr4 93086334 93086731 -62543389 + Lx8 LINE L1 7020 7455 -18 1 1295 231 328 34 8 chr4 93086728 93086845 -62543275 + Lx8 LINE L1 7005 7124 -349 1 1295 351 0 0 0 chr4 93086886 93086925 -62543195 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1295 203 224 40 0 chr4 93087843 93087855 -62542265 + (TA)n Simple_repeat Simple_repeat 1 12 0 1 1295 654 13 0 0 chr4 93087855 93087930 -62542190 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1295 203 224 40 0 chr4 93087930 93087993 -62542127 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1295 341 327 73 34 chr4 93088041 93088247 -62541873 - L1ME4a LINE L1 -199 5925 5712 1 1295 22 0 0 0 chr4 93088478 93088500 -62541620 + AT_rich Low_complexity Low_complexity 1 22 0 1 1295 379 324 87 39 chr4 93088520 93088751 -62541369 - L1ME4a LINE L1 -645 5595 5354 1 1295 25 0 0 0 chr4 93089739 93089764 -62540356 + AT_rich Low_complexity Low_complexity 1 25 0 1 1295 241 318 0 0 chr4 93089788 93089854 -62540266 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 1295 2347 184 20 45 chr4 93089972 93090480 -62539640 + Lx2B LINE L1 6493 6987 -13 1 1295 351 0 0 0 chr4 93090480 93090519 -62539601 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1295 1472 240 58 50 chr4 93090537 93090822 -62539298 - MTD LTR MaLR -34 385 85 1 1295 3714 55 6 4 chr4 93090822 93091296 -62538824 - L1Md_F2 LINE L1 0 6582 6108 1 1295 1472 240 58 50 chr4 93091296 93091391 -62538729 - MTD LTR MaLR -335 84 2 1 1295 321 327 182 18 chr4 93091465 93091630 -62538490 - B4 SINE B4 -20 272 81 1 1295 5616 151 21 11 chr4 93091650 93092605 -62537515 - Lx3C LINE L1 -20 6956 5993 1 1295 540 306 108 31 chr4 93092991 93093251 -62536869 - B4A SINE B4 -12 280 1 1 1295 29 28 0 0 chr4 93094338 93094374 -62535746 + AT_rich Low_complexity Low_complexity 1 36 0 1 1295 43 0 0 0 chr4 93095173 93095216 -62534904 + AT_rich Low_complexity Low_complexity 1 43 0 1 1295 969 274 66 18 chr4 93095331 93095769 -62534351 - L1MA8 LINE L1 -333 5958 5500 1 1295 489 307 144 32 chr4 93095913 93095930 -62534190 - L1MA8 LINE L1 -761 5382 5368 1 1295 180 77 0 0 chr4 93095930 93095956 -62534164 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1295 489 307 144 32 chr4 93095956 93095978 -62534142 - L1MA8 LINE L1 -776 5367 5350 1 1295 680 121 137 0 chr4 93095978 93096102 -62534018 - B1_Mus1 SINE Alu -6 142 2 1 1295 221 0 0 33 chr4 93096102 93096132 -62533988 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1295 489 307 144 32 chr4 93096132 93096527 -62533593 - L1MA8 LINE L1 -794 5349 4898 1 1295 15177 15 0 1 chr4 93096582 93098334 -62531786 + L1Md_T LINE L1 3836 5586 -297 1 1295 8483 29 0 0 chr4 93098334 93099328 -62530792 + L1Md_T LINE L1 5587 6580 -2 1 1295 342 0 0 0 chr4 93099332 93099370 -62530750 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 1295 1274 103 0 16 chr4 93099528 93099716 -62530404 + B2_Mm2 SINE B2 2 186 -9 1 1295 6386 39 0 0 chr4 93101005 93101769 -62528351 + L1Md_T LINE L1 5819 6582 0 1 1295 2361 161 182 23 chr4 93101789 93102305 -62527815 - MT2B LTR ERVL -3 598 1 1 1295 2117 95 19 82 chr4 93102515 93102883 -62527237 - L1Md_F2 LINE L1 0 6582 6238 1 1295 181 333 72 0 chr4 93103282 93103351 -62526769 - MIRb SINE MIR -72 196 123 1 1295 204 286 0 28 chr4 93107104 93107176 -62522944 + CT-rich Low_complexity Low_complexity 3 72 0 1 1295 217 214 0 23 chr4 93107107 93107150 -62522970 + C-rich Low_complexity Low_complexity 1 42 0 1 1295 270 0 0 0 chr4 93107314 93107344 -62522776 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1295 860 295 95 55 chr4 93107549 93107897 -62522223 + MLT1-int LTR MaLR 938 1299 -72 1 1295 489 62 0 0 chr4 93108334 93108399 -62521721 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1295 583 289 173 28 chr4 93108433 93108792 -62521328 - Lx9 LINE L1 -316 7328 6918 1 1295 233 321 9 9 chr4 93108845 93108952 -62521168 + Lx9 LINE L1 7350 7456 -188 1 1295 468 51 0 0 chr4 93108953 93109012 -62521108 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1295 252 0 0 0 chr4 93109018 93109046 -62521074 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1295 231 36 0 0 chr4 93109046 93109073 -62521047 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1295 240 361 66 29 chr4 93109678 93109815 -62520305 - B1_Mus1 SINE Alu 0 148 7 1 1295 247 330 47 0 chr4 93109879 93109985 -62520135 + L1MD LINE L1 2706 2816 -3330 1 1295 3244 215 56 85 chr4 93110561 93111400 -62518720 - Lx5 LINE L1 -212 6838 6024 1 1295 2051 181 66 52 chr4 93111397 93111880 -62518240 - L1_Mur2 LINE L1 -636 5241 4752 1 1295 200 149 21 0 chr4 93111913 93111960 -62518160 + CT-rich Low_complexity Low_complexity 2 49 0 1 1295 994 85 35 0 chr4 93111962 93112103 -62518017 - B1_Mus1 SINE Alu -1 147 2 1 1295 851 161 24 0 chr4 93112109 93112277 -62517843 - L1_Mur2 LINE L1 -1841 4036 3865 1 1295 425 137 41 0 chr4 93112275 93112348 -62517772 + Lx3A LINE L1 5696 5771 -1210 1 1295 1483 189 161 13 chr4 93112344 93112899 -62517221 - L1_Mur2 LINE L1 -4423 1454 817 1 1295 272 255 78 39 chr4 93113159 93113261 -62516859 - MLT1I LTR MaLR -205 206 101 1 1295 1314 275 75 9 chr4 93114576 93114921 -62515199 + MTEb LTR MaLR 2 369 -10 1 1295 243 0 0 0 chr4 93115173 93115200 -62514920 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1295 333 0 0 0 chr4 93115200 93115236 -62514884 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1295 387 0 0 0 chr4 93115684 93115727 -62514393 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1295 493 307 39 0 chr4 93115733 93115886 -62514234 - B3 SINE B2 -28 188 30 1 1295 351 189 210 15 chr4 93117070 93117301 -62512819 - L1MA5A LINE L1 -7 6293 6020 1 1295 21 0 0 0 chr4 93117454 93117475 -62512645 + AT_rich Low_complexity Low_complexity 1 21 0 1 1295 233 327 34 34 chr4 93118493 93118610 -62511510 + MIRb SINE MIR 104 224 -44 1 1295 1086 250 83 14 chr4 93118913 93119262 -62510858 - MTE2a LTR MaLR -2 377 5 1 1295 2006 317 161 51 chr4 93119266 93120689 -62509431 - MTE2a-int LTR MaLR 0 1580 2 1 1295 835 290 23 42 chr4 93120690 93120949 -62509171 - MTE2a LTR MaLR -1 378 125 1 1295 24 53 0 0 chr4 93120966 93121004 -62509116 + AT_rich Low_complexity Low_complexity 1 38 0 1 1295 1438 41 0 0 chr4 93121048 93121218 -62508902 - L1_Mus1 LINE L1 -811 5756 5587 1 1295 6026 69 13 0 chr4 93121220 93122004 -62508116 + L1_Mus1 LINE L1 5756 6549 -18 1 1295 4659 71 2 8 chr4 93122005 93122645 -62507475 - L1Md_F2 LINE L1 -1500 4383 3748 1 1295 9270 67 0 5 chr4 93122643 93123850 -62506270 + L1Md_F2 LINE L1 4386 5586 -297 1 1295 8153 43 1 4 chr4 93123851 93124849 -62505271 + L1Md_F2 LINE L1 5588 6582 0 1 1295 212 179 0 0 chr4 93125050 93125089 -62505031 + A-rich Low_complexity Low_complexity 1 39 0 1 1295 1553 91 5 0 chr4 93125994 93126203 -62503917 - Lx3_Mus LINE L1 -276 6733 6524 1 1295 1787 113 15 0 chr4 93126203 93126469 -62503651 + Lx3_Mus LINE L1 6740 7009 0 1 1295 22 0 0 0 chr4 93126469 93126491 -62503629 + AT_rich Low_complexity Low_complexity 1 22 0 1 1295 1114 65 0 0 chr4 93126491 93126629 -62503491 + B1_Mm SINE Alu 1 138 -9 1 1295 356 0 0 22 chr4 93126629 93126674 -62503446 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1295 345 47 0 0 chr4 93126674 93126716 -62503404 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1295 307 323 10 10 chr4 93127483 93127583 -62502537 + ID_B1 SINE B4 76 175 -49 1 1295 426 276 10 10 chr4 93127500 93127599 -62502521 + PB1D10 SINE Alu 12 110 -7 1 1295 389 174 123 44 chr4 93127965 93128040 -62502080 + Lx9 LINE L1 7362 7442 -202 1 1295 2447 131 37 41 chr4 93128040 93128501 -62501619 + RMER6B LTR ERVK 1 459 -2 1 1295 389 174 123 44 chr4 93128501 93128539 -62501581 + Lx9 LINE L1 7443 7484 -160 1 1295 564 219 0 0 chr4 93130223 93130328 -62499792 - B1_Mur4 SINE Alu -23 127 23 1 1295 183 100 0 0 chr4 93130332 93130362 -62499758 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1295 4069 98 25 0 chr4 93130445 93131037 -62499083 + Lx3_Mus LINE L1 6401 7007 -2 1 1295 2584 35 6 0 chr4 93131185 93131497 -62498623 - L1_Mm LINE L1 -111 5772 5459 1 1295 2823 35 0 0 chr4 93131497 93131836 -62498284 + L1Md_A LINE L1 6244 6582 0 2 1295 246 243 14 0 chr4 93132287 93132361 -62497759 + T-rich Low_complexity Low_complexity 1 75 0 2 1295 225 141 78 0 chr4 93132443 93132507 -62497613 + CT-rich Low_complexity Low_complexity 2 70 0 2 1295 339 215 0 12 chr4 93132751 93132896 -62497224 + CT-rich Low_complexity Low_complexity 1 143 0 2 1295 180 0 0 0 chr4 93133311 93133331 -62496789 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1295 195 42 0 0 chr4 93133470 93133494 -62496626 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1295 312 27 0 0 chr4 93133533 93133570 -62496550 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1295 288 0 0 0 chr4 93133570 93133601 -62496519 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1295 916 286 56 78 chr4 93134057 93134417 -62495703 - ORR1E LTR MaLR -4 355 4 2 1295 583 348 131 28 chr4 93134636 93134964 -62495156 + MTEa LTR MaLR 1 362 -17 2 1295 311 281 44 0 chr4 93135031 93135145 -62494975 - L1MEc LINE L1 -5359 1041 923 2 1295 399 333 48 0 chr4 93135392 93135578 -62494542 + Lx6 LINE L1 7240 7434 -26 2 1295 222 326 0 0 chr4 93135839 93135885 -62494235 + MER5A DNA MER1_type 1 46 -143 2 1295 409 298 148 111 chr4 93136131 93136490 -62493630 - MTE2a LTR MaLR -3 376 5 2 1295 21 0 0 0 chr4 93136541 93136562 -62493558 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 3263 45 17 0 chr4 93136601 93137004 -62493116 - L1Md_F3 LINE L1 -2 6582 6173 2 1295 5847 56 3 2 chr4 93137004 93137979 -62492141 + L1Md_F3 LINE L1 5122 6098 -486 2 1295 198 0 0 0 chr4 93138054 93138076 -62492044 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 2 1295 5087 85 8 12 chr4 93138131 93138859 -62491261 - L1Md_F2 LINE L1 -2 6580 5856 2 1295 27071 92 15 12 chr4 93138859 93143570 -62486550 - L1Md_F LINE L1 -783 5100 376 2 1295 24 32 0 0 chr4 93143584 93143615 -62486505 + AT_rich Low_complexity Low_complexity 1 31 0 2 1295 2297 120 43 14 chr4 93144446 93144817 -62485303 + Lx LINE L1 6272 6653 -1 2 1295 306 130 0 0 chr4 93145047 93145093 -62485027 - ORR1B1 LTR MaLR -8 386 341 2 1295 4398 87 46 9 chr4 93145133 93145782 -62484338 - Lx3_Mus LINE L1 -8 7001 6329 2 1295 1389 106 0 0 chr4 93145782 93145980 -62484140 + Lx3_Mus LINE L1 6109 6306 -703 2 1295 1343 222 123 6 chr4 93145980 93146297 -62483823 - ORR1B1 LTR MaLR -40 354 1 2 1295 196 340 136 41 chr4 93146489 93146636 -62483484 + L4 LINE RTE 1212 1372 -657 2 1295 373 23 0 0 chr4 93146659 93146702 -62483418 + (GAA)n Simple_repeat Simple_repeat 3 45 0 2 1295 912 151 0 0 chr4 93146702 93146881 -62483239 + GA-rich Low_complexity Low_complexity 2 180 0 2 1295 241 193 129 54 chr4 93148069 93148162 -62481958 - LTR84a LTR ERVL -106 651 552 2 1295 430 256 177 28 chr4 93148266 93148515 -62481605 + L1MA9 LINE L1 5994 6279 -33 2 1295 660 308 51 32 chr4 93149070 93149388 -62480732 + MER2 DNA MER2_type 1 330 -6 2 1295 1200 101 0 0 chr4 93149414 93149592 -62480528 + (CTA)n Simple_repeat Simple_repeat 2 179 0 2 1295 420 111 0 0 chr4 93149592 93149655 -62480465 + (CTG)n Simple_repeat Simple_repeat 2 64 0 2 1295 239 373 0 0 chr4 93149655 93149722 -62480398 - MER45R DNA Tip100 -1197 384 318 2 1295 421 312 45 20 chr4 93150163 93150408 -62479712 - L1ME3 LINE L1 -139 6023 5773 2 1295 324 58 87 0 chr4 93150518 93150587 -62479533 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 1295 315 0 0 0 chr4 93151330 93151365 -62478755 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1295 522 0 0 0 chr4 93151365 93151422 -62478698 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1295 253 297 75 69 chr4 93151450 93151609 -62478511 - MLT1B LTR MaLR -219 171 12 2 1295 594 262 38 33 chr4 93151660 93151873 -62478247 - B3 SINE B2 -2 214 1 2 1295 21 36 0 0 chr4 93151929 93151957 -62478163 + AT_rich Low_complexity Low_complexity 1 28 0 2 1295 390 299 84 71 chr4 93152085 93152119 -62478001 - CYRA11_Mm Unknown Y-chromosome -201 416 176 2 1295 744 234 69 15 chr4 93152119 93152323 -62477797 + URR1B DNA MER1_type 6 220 -5 2 1295 290 292 82 27 chr4 93153319 93153571 -62476549 - MER67A LTR ERV1 -222 439 25 2 1295 555 135 301 17 chr4 93153626 93153799 -62476321 + Lx9 LINE L1 7407 7628 -16 2 1295 230 211 53 0 chr4 93154295 93154352 -62475768 - U2 snRNA snRNA -128 60 1 2 1295 1270 267 113 25 chr4 93154934 93155733 -62474387 - Lx7 LINE L1 -1463 6233 5356 2 1295 2163 212 25 38 chr4 93155733 93156254 -62473866 + Lx9 LINE L1 7124 7637 -7 2 1295 1151 274 73 12 chr4 93156287 93156768 -62473352 - Lx7 LINE L1 -547 5333 4824 2 1295 5344 133 10 50 chr4 93156774 93158024 -62472096 - Lx7 LINE L1 -2272 3611 2459 2 1295 944 134 5 63 chr4 93158046 93158237 -62471883 - Lx3B LINE L1 -1 6972 6793 2 1295 1146 130 0 6 chr4 93158237 93158399 -62471721 + Lx3B LINE L1 6640 6800 -173 2 1295 327 271 2 1 chr4 93158442 93158565 -62471555 - L1_Mur3 LINE L1 -3463 2414 2291 2 1295 222 0 0 73 chr4 93158569 93158610 -62471510 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1295 327 295 108 33 chr4 93158610 93158795 -62471325 - L1_Mur3 LINE L1 -2656 3224 3012 2 1295 570 15 0 0 chr4 93158795 93158862 -62471258 + (TTTC)n Simple_repeat Simple_repeat 1 67 0 2 1295 327 304 102 32 chr4 93158862 93159117 -62471003 - L1_Mur3 LINE L1 -3081 3065 2801 2 1295 251 257 0 51 chr4 93159660 93159738 -62470382 - LTR48 LTR ERV1 -709 78 5 2 1295 32 67 0 0 chr4 93162089 93162149 -62467971 + AT_rich Low_complexity Low_complexity 1 60 0 2 1295 732 59 0 0 chr4 93162243 93162345 -62467775 + (TC)n Simple_repeat Simple_repeat 1 102 0 2 1295 200 269 19 0 chr4 93162345 93162397 -62467723 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1295 310 351 92 12 chr4 93162557 93162730 -62467390 + MLT1F LTR MaLR 44 230 -318 2 1295 364 283 113 21 chr4 93162745 93162967 -62467153 + MLT1F LTR MaLR 305 653 0 2 1295 376 357 58 78 chr4 93164290 93164548 -62465572 + B4A SINE B4 1 253 -39 2 1295 24 0 0 0 chr4 93164556 93164580 -62465540 + AT_rich Low_complexity Low_complexity 1 24 0 2 1295 1251 124 62 4 chr4 93164581 93164807 -62465313 - Lx3A LINE L1 -1 6980 6742 2 1295 642 207 0 0 chr4 93164914 93165093 -62465027 + GA-rich Low_complexity Low_complexity 2 180 0 2 1295 394 340 44 13 chr4 93165645 93165803 -62464317 + RSINE1 SINE B4 3 165 0 2 1295 690 13 0 0 chr4 93166118 93166197 -62463923 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1295 348 24 0 0 chr4 93166197 93166237 -62463883 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2 1295 718 329 21 21 chr4 93167776 93168012 -62462108 - B4A SINE B4 -2 290 55 2 1295 3432 171 185 57 chr4 93168039 93168110 -62462010 + RLTR25B LTR ERVK 50 120 -908 2 1295 700 68 0 19 chr4 93168110 93168215 -62461905 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 1295 3432 171 185 57 chr4 93168215 93168699 -62461421 + RLTR25B LTR ERVK 121 628 -400 2 1295 432 0 0 0 chr4 93168699 93168747 -62461373 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1295 3432 171 185 57 chr4 93168747 93169056 -62461064 + RLTR25B LTR ERVK 629 1025 -3 2 1295 1924 75 4 0 chr4 93170066 93170333 -62459787 - Lx3_Mus LINE L1 0 7009 6742 2 1295 2863 89 28 0 chr4 93170333 93170726 -62459394 + Lx3_Mus LINE L1 6345 6748 -261 2 1295 489 304 52 22 chr4 93170982 93171333 -62458787 - L1M3 LINE L1 -782 5361 4982 2 1295 1038 107 0 0 chr4 93171333 93171510 -62458610 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 1295 489 298 43 23 chr4 93171510 93171530 -62458590 - L1M3 LINE L1 -1159 4981 4963 2 1295 198 160 0 0 chr4 93171530 93171580 -62458540 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1295 272 127 0 18 chr4 93171980 93172036 -62458084 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1295 4877 118 15 34 chr4 93172135 93172959 -62457161 + RLTR13C2 LTR ERVK 1 808 0 2 1295 2361 79 0 0 chr4 93175162 93175467 -62454653 - Lx LINE L1 -414 6240 5936 2 1295 401 123 12 36 chr4 93175467 93175551 -62454569 + Lx LINE L1 6558 6639 -15 2 1295 1209 69 0 0 chr4 93175551 93175711 -62454409 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 2 1295 1699 198 99 61 chr4 93175776 93175862 -62454258 - RLTR12A LTR ERVK -3 565 479 2 1295 225 0 0 0 chr4 93175862 93175887 -62454233 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1295 1699 198 99 61 chr4 93175887 93176105 -62454015 - RLTR12A LTR ERVK -90 478 255 2 1295 513 0 0 0 chr4 93176105 93176162 -62453958 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1295 1699 198 99 61 chr4 93176162 93176400 -62453720 - RLTR12A LTR ERVK -314 254 4 2 1295 296 192 0 27 chr4 93177771 93177846 -62452274 + GA-rich Low_complexity Low_complexity 4 76 0 2 1295 324 296 38 28 chr4 93178270 93178381 -62451739 + RSINE1 SINE B4 1 104 -188 2 1295 201 74 0 0 chr4 93178384 93178411 -62451709 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1295 21 0 0 0 chr4 93178411 93178432 -62451688 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 1507 168 70 20 chr4 93179601 93179899 -62450221 - Lx3B LINE L1 -1 6972 6660 2 1295 21 0 0 0 chr4 93184891 93184912 -62445208 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 609 336 61 16 chr4 93185318 93185681 -62444439 + L1MEd LINE L1 26 404 -5715 2 1295 1793 178 88 14 chr4 93186007 93186372 -62443748 - ORR1B1 LTR MaLR -2 392 1 2 1295 222 37 0 0 chr4 93187292 93187319 -62442801 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1295 575 81 12 0 chr4 93187736 93187822 -62442298 + (TTGG)n Simple_repeat Simple_repeat 2 88 0 2 1295 982 289 76 30 chr4 93189003 93189396 -62440724 + Lx8 LINE L1 7002 7412 -61 2 1295 1277 265 46 23 chr4 93190681 93191029 -62439091 - MTEa LTR MaLR -23 356 1 2 1295 6098 177 7 3 chr4 93191040 93191675 -62438445 + Lx2B LINE L1 5118 5756 -130 2 1295 324 0 0 0 chr4 93191675 93191711 -62438409 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 161 6098 193 48 60 chr4 93191711 93192978 -62437142 + Lx2B LINE L1 5753 6999 -1 2 1296 298 278 52 0 chr4 93194816 93194913 -62435207 + MLT1B LTR MaLR 49 150 -240 2 1296 239 139 28 73 chr4 93195556 93195665 -62434455 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 2 1296 346 263 74 0 chr4 93195670 93195765 -62434355 - B1F SINE Alu -45 104 3 2 1296 786 275 16 0 chr4 93196007 93196196 -62433924 + B3A SINE B2 1 192 -6 2 1296 460 318 34 34 chr4 93196374 93196670 -62433450 + HAL1 LINE L1 2045 2340 -167 2 1296 784 186 0 12 chr4 93197333 93197583 -62432537 + GA-rich Low_complexity Low_complexity 1 247 0 2 1296 3362 28 5 0 chr4 93198341 93198735 -62431385 - MTA_Mm LTR MaLR 0 396 1 2 1296 9464 19 3 0 chr4 93198735 93199830 -62430290 - MTA_Mm-int LTR MaLR 0 1098 1 2 1296 3307 16 29 0 chr4 93199830 93200215 -62429905 - MTA_Mm LTR MaLR 0 396 1 2 1296 433 212 244 32 chr4 93201852 93202008 -62428112 - MTD LTR MaLR -38 381 193 3 1296 521 179 81 8 chr4 93202012 93202136 -62427984 - RMER1B Other Other -15 1051 919 3 1296 1791 226 46 8 chr4 93202143 93202535 -62427585 - RMER1B Other Other -349 717 311 3 1296 644 279 6 22 chr4 93202535 93202718 -62427402 - MTD LTR MaLR -237 182 3 3 1296 5816 51 4 1 chr4 93204055 93204777 -62425343 - L1Md_F2 LINE L1 -12 6570 5847 3 1296 699 12 0 0 chr4 93204966 93205046 -62425074 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 3 1296 910 57 8 8 chr4 93205063 93205188 -62424932 - B1_Mur4 SINE Alu 0 150 26 3 1296 1677 206 46 46 chr4 93208700 93209051 -62421069 + RMER6D LTR ERVK 327 716 -4 3 1296 3347 30 20 2 chr4 93209429 93209836 -62420284 + L1Md_A LINE L1 6167 6580 -2 3 1296 273 210 62 70 chr4 93209863 93209975 -62420145 - L1M4 LINE L1 -742 5438 5326 3 1296 186 43 0 0 chr4 93209976 93209999 -62420121 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1296 207 167 0 0 chr4 93210061 93210103 -62420017 + T-rich Low_complexity Low_complexity 1 42 0 3 1296 434 314 89 48 chr4 93210591 93210905 -62419215 - RMER20B LTR ERVK -67 560 234 3 1296 1426 80 0 0 chr4 93211153 93211353 -62418767 - L1Md_F2 LINE L1 0 6582 6383 3 1296 216 0 0 0 chr4 93211477 93211501 -62418619 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1296 1182 71 0 0 chr4 93212014 93212168 -62417952 - L1_Mus1 LINE L1 -6 6561 6408 3 1296 375 23 0 0 chr4 93214032 93214076 -62416044 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 1296 42 36 0 0 chr4 93214720 93214776 -62415344 + AT_rich Low_complexity Low_complexity 1 56 0 3 1296 224 279 15 0 chr4 93215224 93215292 -62414828 + CT-rich Low_complexity Low_complexity 3 71 0 3 1296 221 405 11 0 chr4 93215433 93215522 -62414598 - PB1D9 SINE Alu -27 93 4 3 1296 26 30 0 0 chr4 93215964 93215997 -62414123 + AT_rich Low_complexity Low_complexity 1 33 0 3 1296 24 53 0 0 chr4 93217299 93217337 -62412783 + AT_rich Low_complexity Low_complexity 1 38 0 3 1296 279 0 0 0 chr4 93217714 93217745 -62412375 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1296 495 0 0 0 chr4 93217745 93217799 -62412321 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1296 188 356 19 38 chr4 93218126 93218231 -62411889 - L2b LINE L2 -12 3363 3261 3 1296 181 300 76 22 chr4 93218375 93218467 -62411653 - MER5A DNA MER1_type -83 106 10 3 1296 184 398 59 19 chr4 93219057 93219313 -62410807 - L2b LINE L2 -799 2620 2355 3 1296 974 72 191 0 chr4 93220193 93220345 -62409775 - B2_Mm2 SINE B2 -14 181 1 3 1296 1643 110 25 46 chr4 93221592 93221877 -62408243 - L1_Mus3 LINE L1 -6 6632 6354 3 1296 4880 73 32 1 chr4 93221877 93222522 -62407598 + L1_Mus3 LINE L1 5713 6378 -260 3 1296 4879 110 59 4 chr4 93222522 93223269 -62406851 - Lx LINE L1 -15 6639 5852 3 1296 11226 59 0 2 chr4 93223449 93224879 -62405241 + L1Md_F2 LINE L1 4160 5586 -297 3 1296 8010 49 1 0 chr4 93224879 93225861 -62404259 + L1Md_F2 LINE L1 5587 6569 -13 3 1296 594 0 0 0 chr4 93227210 93227276 -62402844 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3 1296 608 315 90 19 chr4 93227512 93227768 -62402352 - B4A SINE B4 -18 274 1 3 1296 204 291 0 18 chr4 93228300 93228356 -62401764 - MIR SINE MIR -92 170 116 3 1296 227 340 60 98 chr4 93228716 93228951 -62401169 + MLT1I LTR MaLR 136 361 -50 3 1296 21 0 0 0 chr4 93229221 93229242 -62400878 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 444 37 0 0 chr4 93229669 93229723 -62400397 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1296 459 0 0 0 chr4 93230056 93230107 -62400013 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1296 211 293 160 67 chr4 93230282 93230432 -62399688 - MIR SINE MIR -91 171 8 3 1296 217 170 19 0 chr4 93230823 93230876 -62399244 + T-rich Low_complexity Low_complexity 2 55 0 3 1296 286 320 101 8 chr4 93231007 93231136 -62398984 - MLT1A LTR MaLR -233 141 1 3 1296 349 355 169 30 chr4 93231909 93232281 -62397839 + L2 LINE L2 2385 2808 -611 3 1296 435 68 0 0 chr4 93232493 93232552 -62397568 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1296 380 318 56 97 chr4 93232778 93232994 -62397126 + RMER20B LTR ERVK 195 418 -209 3 1296 237 381 80 62 chr4 93233233 93233345 -62396775 + RMER20B LTR ERVK 489 602 -25 3 1296 872 297 105 56 chr4 93233625 93234246 -62395874 + MamRep1161 DNA TcMar 2 652 -305 3 1296 2981 171 86 35 chr4 93235424 93235764 -62394356 + RMER6C LTR ERVK 1 372 -318 3 1296 641 36 12 0 chr4 93235764 93235848 -62394272 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 1296 2981 171 86 35 chr4 93235848 93236156 -62393964 + RMER6C LTR ERVK 373 682 -8 3 1296 618 14 0 0 chr4 93236387 93236458 -62393662 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1296 188 169 0 44 chr4 93236838 93236906 -62393214 + T-rich Low_complexity Low_complexity 4 68 0 3 1296 2222 191 32 0 chr4 93236964 93237372 -62392748 - MTC LTR MaLR 0 421 1 3 1296 744 61 0 0 chr4 93237630 93237728 -62392392 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1296 591 250 23 0 chr4 93237944 93238072 -62392048 + B1_Mur2 SINE Alu 5 135 -14 3 1296 351 119 0 0 chr4 93238074 93238141 -62391979 + (CATA)n Simple_repeat Simple_repeat 2 68 0 3 1296 285 51 0 0 chr4 93238194 93238233 -62391887 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1296 1167 75 0 0 chr4 93238233 93238380 -62391740 - B1_Mus2 SINE Alu 0 147 1 3 1296 616 225 57 43 chr4 93238388 93238584 -62391536 + RMER1B Other Other 817 1005 -61 3 1296 21 0 0 0 chr4 93238589 93238610 -62391510 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 5696 15 0 8 chr4 93238794 93239450 -62390670 - L1Md_A LINE L1 -2 6580 5930 3 1296 301 312 127 33 chr4 93241083 93241161 -62388959 + L1MB4 LINE L1 5872 5958 -222 3 1296 6188 39 3 1 chr4 93241161 93241913 -62388207 + L1Md_F3 LINE L1 5832 6584 0 3 1296 301 312 127 33 chr4 93241913 93242079 -62388041 + L1MB4 LINE L1 5959 6139 -41 3 1296 220 304 0 14 chr4 93242082 93242152 -62387968 + B3 SINE B2 2 70 -146 3 1296 366 100 0 0 chr4 93242191 93242251 -62387869 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1296 206 244 12 0 chr4 93242250 93242332 -62387788 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1296 202 245 41 0 chr4 93242860 93242909 -62387211 + CT-rich Low_complexity Low_complexity 1 51 0 3 1296 201 39 0 0 chr4 93243016 93243042 -62387078 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1296 229 301 81 14 chr4 93243307 93243381 -62386739 + RMER15 LTR ERVL 295 373 -202 3 1296 22 0 0 0 chr4 93243428 93243450 -62386670 + AT_rich Low_complexity Low_complexity 1 22 0 3 1296 197 358 55 62 chr4 93244682 93244810 -62385310 + MER5A DNA MER1_type 61 187 -2 3 1296 2260 269 134 52 chr4 93246195 93247388 -62382732 + RMER1B Other Other 1 936 -130 3 1296 579 88 0 0 chr4 93247388 93247479 -62382641 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1296 2260 252 143 7 chr4 93247479 93247581 -62382539 + RMER1B Other Other 937 1051 -15 3 1296 3090 19 84 0 chr4 93247640 93248019 -62382101 - IAPLTR2a LTR ERVK 0 411 1 3 1296 21 95 0 0 chr4 93248115 93248178 -62381942 + AT_rich Low_complexity Low_complexity 1 63 0 3 1296 1221 312 73 30 chr4 93248454 93249012 -62381108 + Lx8 LINE L1 6734 7315 -158 3 1296 2044 224 17 0 chr4 93249067 93249478 -62380642 + Lx9 LINE L1 6857 7274 -370 3 1296 875 202 61 0 chr4 93249477 93249553 -62380567 + Lx9 LINE L1 7396 7476 -168 3 1296 321 26 0 0 chr4 93249553 93249591 -62380529 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1296 875 202 61 0 chr4 93249591 93249742 -62380378 + Lx9 LINE L1 7477 7636 -8 3 1296 280 282 64 46 chr4 93249779 93249998 -62380122 + L1MD3 LINE L1 7760 7982 -13 3 1296 1200 126 14 5 chr4 93250812 93251020 -62379100 + L1_Mus3 LINE L1 6429 6638 0 3 1296 26 0 0 0 chr4 93251119 93251145 -62378975 + AT_rich Low_complexity Low_complexity 1 26 0 3 1296 8010 159 104 14 chr4 93251236 93253680 -62376440 - Lx3B LINE L1 -23 6950 4098 3 1296 8082 47 0 8 chr4 93253678 93254672 -62375448 + L1_Mm LINE L1 4596 5586 -297 3 1296 7821 53 2 22 chr4 93254672 93255688 -62374432 + L1Md_F2 LINE L1 5587 6582 0 3 1296 8082 75 43 29 chr4 93255688 93256090 -62374030 + L1_Mm LINE L1 5587 5602 -281 3 1296 228 135 0 0 chr4 93256116 93256153 -62373967 + L1M3b LINE L1 1433 1469 -4812 3 1296 710 200 244 34 chr4 93256169 93256345 -62373775 - B3 SINE B2 -3 213 1 3 1296 660 287 175 64 chr4 93256527 93256806 -62373314 + L1M3 LINE L1 4371 4687 -1453 3 1296 496 235 63 101 chr4 93256806 93256995 -62373125 + B3A SINE B2 1 182 -16 3 1296 660 287 175 64 chr4 93256995 93257544 -62372576 + L1M3 LINE L1 4688 5291 -849 3 1296 256 312 58 0 chr4 93257572 93257710 -62372410 + L1M3 LINE L1 5340 5485 -806 3 1296 1238 280 70 17 chr4 93257792 93258322 -62371798 + L1MB1 LINE L1 5587 6144 -24 3 1296 540 0 0 0 chr4 93258544 93258604 -62371516 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1296 222 150 0 0 chr4 93258608 93258648 -62371472 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 3 1296 228 357 124 25 chr4 93259759 93259960 -62370160 - MIRb SINE MIR -8 260 40 3 1296 21 57 0 0 chr4 93260073 93260108 -62370012 + AT_rich Low_complexity Low_complexity 1 35 0 3 1296 243 0 0 0 chr4 93260890 93260917 -62369203 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1296 757 259 20 70 chr4 93260922 93261121 -62368999 + B3A SINE B2 4 192 -6 3 1296 201 74 0 0 chr4 93261139 93261166 -62368954 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1296 310 312 0 0 chr4 93261166 93261243 -62368877 + HAL1-3A_ME LINE L1 1975 2051 -807 3 1296 547 370 9 51 chr4 93261748 93261962 -62368158 + B4 SINE B4 4 208 -84 3 1296 283 337 0 0 chr4 93262000 93262098 -62368022 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1296 5732 110 1 1 chr4 93263313 93264131 -62365989 - L1_Mus1 LINE L1 -286 5597 4780 3 1296 7804 54 3 4 chr4 93264128 93265091 -62365029 + L1_Mus1 LINE L1 5600 6561 -6 3 1296 331 176 202 19 chr4 93265304 93265408 -62364712 + L1MEc LINE L1 266 388 -6012 3 1296 1026 202 58 0 chr4 93267460 93267668 -62362452 + URR1A DNA MER1_type 2 221 -5 3 1296 508 234 0 0 chr4 93267669 93267776 -62362344 + U6 snRNA snRNA 1 107 0 3 1296 2732 208 31 26 chr4 93267882 93268283 -62361837 + L1_Mur2 LINE L1 872 1271 -5815 3 1296 185 0 40 0 chr4 93268283 93268308 -62361812 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1296 2732 194 48 7 chr4 93268308 93268847 -62361273 + L1_Mur2 LINE L1 1272 1839 -4038 3 1296 1704 142 15 0 chr4 93268871 93269139 -62360981 + L1_Mur2 LINE L1 5574 5845 -32 3 1296 22 0 0 0 chr4 93269173 93269195 -62360925 + AT_rich Low_complexity Low_complexity 1 22 0 4 1296 558 0 0 0 chr4 93269196 93269258 -62360862 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1296 407 331 100 7 chr4 93271016 93271156 -62358964 + RSINE1 SINE B4 13 165 0 4 1296 194 270 118 67 chr4 93271340 93271459 -62358661 + MIR SINE MIR 110 234 -28 4 1296 585 305 0 0 chr4 93272187 93272318 -62357802 - RSINE1 SINE B4 -33 132 2 4 1296 234 0 0 0 chr4 93272322 93272348 -62357772 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1296 2181 190 73 12 chr4 93273363 93273869 -62356251 - Lx9 LINE L1 -18 7626 7090 4 1296 5873 36 0 0 chr4 93274456 93275153 -62354967 + L1Md_T LINE L1 5882 6578 -4 4 1296 452 321 36 18 chr4 93275461 93275629 -62354491 + RMER15 LTR ERVL 405 575 0 4 1296 22 35 0 0 chr4 93275927 93275956 -62354164 + AT_rich Low_complexity Low_complexity 1 29 0 4 1296 1865 147 174 32 chr4 93276338 93276656 -62353464 + RMER4A LTR ERVK 1 342 -124 4 1296 549 0 0 0 chr4 93276656 93276717 -62353403 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1296 257 0 30 0 chr4 93276717 93276749 -62353371 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1296 1865 147 174 32 chr4 93276749 93276837 -62353283 + RMER4A LTR ERVK 343 464 -2 4 1296 660 158 85 46 chr4 93276839 93276992 -62353128 + RMER4A LTR ERVK 308 466 0 4 1296 422 373 26 21 chr4 93277161 93277350 -62352770 - B3 SINE B2 -26 190 1 4 1296 25 31 0 0 chr4 93277612 93277644 -62352476 + AT_rich Low_complexity Low_complexity 1 32 0 4 1296 338 333 0 0 chr4 93278245 93278353 -62351767 + PB1D10 SINE Alu 1 108 -9 4 1296 415 279 74 0 chr4 93279448 93279570 -62350550 - MTE2a LTR MaLR -8 371 241 4 1296 182 62 0 30 chr4 93279648 93279681 -62350439 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1296 260 267 37 141 chr4 93279681 93279816 -62350304 - MTE2a LTR MaLR -298 121 1 4 1296 351 325 35 63 chr4 93279873 93280047 -62350073 + MER97c DNA MER1_type? 11 179 -911 4 1296 24 32 0 0 chr4 93280439 93280470 -62349650 + AT_rich Low_complexity Low_complexity 1 31 0 4 1296 3211 270 77 6 chr4 93280523 93281425 -62348695 - Lx6 LINE L1 -15 7445 6480 4 1296 200 122 0 39 chr4 93281429 93281480 -62348640 + A-rich Low_complexity Low_complexity 3 51 0 4 1296 301 170 0 0 chr4 93281480 93281527 -62348593 + Lx6 LINE L1 6440 6486 -974 4 1296 2456 63 6 0 chr4 93281568 93281887 -62348233 - Lx3_Mus LINE L1 0 7009 6689 4 1296 7648 94 10 17 chr4 93281887 93282989 -62347131 + Lx3_Mus LINE L1 5608 6701 -308 4 1296 401 251 159 28 chr4 93282995 93283269 -62346851 - MER33 DNA MER1_type -8 316 3 4 1296 425 306 106 13 chr4 93283734 93283992 -62346128 - MER67D LTR ERV1 -196 465 44 4 1296 432 292 0 0 chr4 93285267 93285363 -62344757 + PB1D10 SINE Alu 15 110 -7 4 1296 424 308 103 23 chr4 93285384 93285768 -62344352 + MER67D LTR ERV1 176 510 -4 4 1296 1422 241 68 28 chr4 93285956 93286352 -62343768 + Lx6 LINE L1 7003 7414 -46 4 1296 522 0 0 0 chr4 93286449 93286507 -62343613 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1296 351 268 195 13 chr4 93286642 93286801 -62343319 + MamRep434 DNA TcMar 140 327 -99 4 1296 274 269 0 0 chr4 93287896 93287963 -62342157 - B1F SINE Alu -1 148 82 4 1296 418 352 25 37 chr4 93288317 93288479 -62341641 + B3A SINE B2 39 198 0 4 1296 476 361 8 8 chr4 93288556 93288687 -62341433 - ID_B1 SINE B4 -10 214 84 4 1296 996 76 0 0 chr4 93288781 93288912 -62341208 - B1_Mus1 SINE Alu -16 132 2 4 1296 280 361 213 0 chr4 93289046 93289168 -62340952 + MTE-int LTR MaLR 1028 1175 -405 4 1296 2246 114 153 0 chr4 93289189 93289601 -62340519 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1296 6044 42 5 12 chr4 93289603 93290352 -62339768 - IAPEz-int LTR ERVK -2 6479 5736 4 1296 2250 61 0 0 chr4 93290351 93290629 -62339491 - IAPEz-int LTR ERVK -4845 1636 1359 4 1296 4504 59 30 30 chr4 93290629 93291256 -62338864 - IAPEz-int LTR ERVK -5819 662 36 4 1296 479 192 62 152 chr4 93291256 93291268 -62338852 + ORR1D2-int LTR MaLR 1038 1047 -323 4 1296 2312 90 58 68 chr4 93291268 93291683 -62338437 - IAPLTR2a LTR ERVK 0 411 1 4 1296 479 192 62 152 chr4 93291683 93291848 -62338272 + ORR1D2-int LTR MaLR 1048 1199 -171 4 1296 3833 80 84 0 chr4 93291853 93292390 -62337730 - Lx3_Mus LINE L1 -9 7000 6419 4 1296 2112 105 19 22 chr4 93292390 93292712 -62337408 + Lx3_Mus LINE L1 6070 6390 -619 4 1296 710 251 50 6 chr4 93292712 93292892 -62337228 + ORR1D2-int LTR MaLR 1181 1368 -2 4 1296 930 255 72 48 chr4 93292887 93293138 -62336982 + ORR1D2 LTR MaLR 1 257 -113 4 1296 4400 14 2 0 chr4 93293153 93293645 -62336475 - MT2_Mm LTR ERVL 0 493 1 4 1296 314 0 0 0 chr4 93293645 93293683 -62336437 - MERVL-int LTR ERVL 0 5485 5448 4 1296 375 179 46 35 chr4 93293683 93293770 -62336350 - ORR1A3-int LTR MaLR -1323 640 553 4 1296 29070 20 0 0 chr4 93293770 93297055 -62333065 - MERVL-int LTR ERVL -125 5360 2075 4 1296 10092 10 29 0 chr4 93297044 93298194 -62331926 - MERVL-int LTR ERVL -4255 1230 48 4 1296 257 298 96 88 chr4 93298194 93298241 -62331879 + ORR1D2 LTR MaLR 216 264 -95 4 1296 4400 14 2 0 chr4 93298241 93298733 -62331387 - MT2_Mm LTR ERVL 0 493 1 4 1296 288 257 75 3 chr4 93298733 93298830 -62331290 + ORR1D2 LTR MaLR 265 370 0 4 1296 357 323 10 0 chr4 93300265 93300361 -62329759 + PB1D10 SINE Alu 10 106 -11 4 1296 8247 147 32 7 chr4 93301652 93301728 -62328392 - Lx2B LINE L1 -3 6997 6916 4 1296 207 0 0 0 chr4 93301728 93301751 -62328369 + (CATCC)n Simple_repeat Simple_repeat 4 26 0 4 1296 8247 165 30 7 chr4 93301751 93304039 -62326081 - Lx2B LINE L1 -85 6915 4589 4 1296 4631 155 68 19 chr4 93304041 93305238 -62324882 - L1VL4 LINE L1 -1877 1821 549 4 1296 291 202 16 0 chr4 93305401 93305471 -62324649 - L1VL2 LINE L1 -5843 492 443 4 1296 2419 192 30 16 chr4 93305586 93306077 -62324043 + RLTR28 LTR ERVL 1 498 -26 4 1296 270 301 58 58 chr4 93306812 93306967 -62323153 - MER58B DNA MER1_type -158 183 29 4 1296 216 0 0 0 chr4 93307533 93307557 -62322563 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1296 296 339 84 11 chr4 93307860 93308051 -62322069 + Charlie16a DNA MER1_type 7 211 -131 4 1296 284 312 111 114 chr4 93308363 93308660 -62321460 - ORR1E LTR MaLR 0 359 64 4 1296 189 94 0 0 chr4 93309382 93309414 -62320706 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 1296 2102 309 60 49 chr4 93310925 93311952 -62318168 + Lx9 LINE L1 6584 7622 -22 4 1296 684 261 19 57 chr4 93312686 93312747 -62317373 - Tigger7 DNA MER2_type -10 2481 2420 4 1296 3198 63 0 2 chr4 93312747 93313144 -62316976 + MTA_Mm LTR MaLR 1 396 0 4 1296 684 261 19 57 chr4 93313144 93313293 -62316827 - Tigger7 DNA MER2_type -72 2419 2279 4 1296 1261 52 23 0 chr4 93314261 93314435 -62315685 - L1Md_F2 LINE L1 -2 6580 6403 4 1296 2382 211 49 69 chr4 93314452 93315149 -62314971 - RMER6C LTR ERVK -7 683 1 4 1296 234 374 122 0 chr4 93315566 93315673 -62314447 + RSINE1 SINE B4 46 165 0 4 1296 263 292 121 93 chr4 93315931 93316146 -62313974 + MLT1A0 LTR MaLR 99 319 -46 4 1296 679 101 0 15 chr4 93316369 93316500 -62313620 - L1Md_F2 LINE L1 0 6582 6454 4 1296 3330 65 23 7 chr4 93316500 93316937 -62313183 - L1Md_F2 LINE L1 -12 6570 6127 4 1296 394 197 50 17 chr4 93316993 93317112 -62313008 - L1M4 LINE L1 -918 5228 5106 4 1296 245 297 30 45 chr4 93317635 93317702 -62312418 - tRNA-Ala-GCA tRNA tRNA -8 67 2 4 1296 227 273 15 0 chr4 93317953 93318019 -62312101 - MTEb LTR MaLR -26 353 287 4 1296 980 252 26 43 chr4 93318392 93318740 -62311380 + RLTR15 LTR ERVK 1 342 -17 4 1296 1514 105 63 16 chr4 93319172 93319424 -62310696 - L1_Mus4 LINE L1 -1 6635 6372 4 1296 512 84 0 0 chr4 93319424 93319495 -62310625 + L1_Mus4 LINE L1 6302 6372 -264 4 1296 1189 187 4 4 chr4 93319899 93320125 -62309995 - URR1A DNA MER1_type 0 226 1 4 1296 339 85 0 0 chr4 93322286 93322333 -62307787 + (TCC)n Simple_repeat Simple_repeat 2 48 0 4 1296 3820 174 7 25 chr4 93322344 93322680 -62307440 - Lx2 LINE L1 -6 6991 6655 4 1296 873 96 0 0 chr4 93322680 93322805 -62307315 + (TTTC)n Simple_repeat Simple_repeat 3 127 0 4 1296 3820 174 7 25 chr4 93322805 93323163 -62306957 - Lx2 LINE L1 -343 6654 6309 4 1297 441 0 0 0 chr4 93325311 93325360 -62304760 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1297 492 18 0 0 chr4 93325943 93326000 -62304120 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1297 225 0 0 0 chr4 93326000 93326024 -62304096 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1297 27 49 0 0 chr4 93326597 93326638 -62303482 + AT_rich Low_complexity Low_complexity 1 41 0 4 1297 203 189 0 0 chr4 93326696 93326733 -62303387 + T-rich Low_complexity Low_complexity 1 37 0 4 1297 1116 103 0 0 chr4 93326733 93326879 -62303241 - B1_Mus1 SINE Alu 0 148 3 4 1297 453 133 0 0 chr4 93329348 93329423 -62300697 + (TCCC)n Simple_repeat Simple_repeat 1 75 0 4 1297 207 0 0 0 chr4 93329897 93329920 -62300200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1297 1742 122 0 24 chr4 93330584 93330877 -62299243 - Lx2 LINE L1 0 6997 6712 4 1297 21 82 0 0 chr4 93331903 93331952 -62298168 + AT_rich Low_complexity Low_complexity 1 49 0 4 1297 208 0 0 59 chr4 93333461 93333495 -62296625 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 1297 873 68 0 0 chr4 93333497 93333615 -62296505 - B1_Mus1 SINE Alu 0 148 31 4 1297 4993 189 39 16 chr4 93334466 93335540 -62294580 - Lx2B LINE L1 -13 6987 5889 4 1297 238 267 57 9 chr4 93336092 93336198 -62293922 - Lx9 LINE L1 -18 7626 7516 4 1297 611 94 10 0 chr4 93336208 93336304 -62293816 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1297 241 360 47 0 chr4 93336304 93336454 -62293666 - Lx9 LINE L1 -278 7366 7210 4 1297 28 0 0 0 chr4 93337288 93337316 -62292804 + AT_rich Low_complexity Low_complexity 1 28 0 4 1297 1509 231 20 133 chr4 93337584 93338044 -62292076 - RMER15 LTR ERVL -141 434 27 4 1297 252 258 61 10 chr4 93338406 93338504 -62291616 + L1MEg LINE L1 1369 1471 -4613 4 1297 2722 37 0 0 chr4 93338510 93338838 -62291282 + L1Md_A LINE L1 6254 6581 -1 4 1297 235 196 54 0 chr4 93338924 93338980 -62291140 + MLT1E1 LTR MaLR 596 654 0 4 1297 32 43 0 0 chr4 93339181 93339227 -62290893 + AT_rich Low_complexity Low_complexity 1 46 0 4 1297 23 86 0 0 chr4 93339398 93339456 -62290664 + AT_rich Low_complexity Low_complexity 1 58 0 4 1297 826 151 0 0 chr4 93339546 93339685 -62290435 + L1_Mur3 LINE L1 4444 4582 -1298 4 1297 319 233 14 14 chr4 93339682 93339756 -62290364 + Lx6 LINE L1 6365 6438 -1022 4 1297 1938 257 105 2 chr4 93339755 93340258 -62289862 + Lx6 LINE L1 6810 7364 -96 4 1297 351 187 26 13 chr4 93340262 93340338 -62289782 + ID_B1 SINE B4 124 200 -24 4 1297 332 269 141 24 chr4 93340488 93340701 -62289419 + L1MC5 LINE L1 7687 7924 -37 4 1297 1753 41 9 0 chr4 93341006 93341227 -62288893 - L1Md_F3 LINE L1 -14 6570 6348 4 1297 2581 19 22 0 chr4 93341227 93341539 -62288581 + L1Md_F3 LINE L1 5641 5959 -625 4 1297 300 339 144 32 chr4 93343769 93344019 -62286101 + B4A SINE B4 1 278 -14 5 1297 513 47 0 0 chr4 93344075 93344139 -62285981 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1297 220 333 12 0 chr4 93344140 93344224 -62285896 + (TATATG)n Simple_repeat Simple_repeat 1 85 0 5 1297 275 300 0 0 chr4 93344324 93344384 -62285736 - ID4_ SINE ID -5 78 19 5 1297 279 278 14 0 chr4 93344388 93344460 -62285660 - LTR37A LTR ERV1 -73 353 281 5 1297 482 57 14 0 chr4 93344583 93344653 -62285467 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 1297 22 35 0 0 chr4 93344701 93344730 -62285390 + AT_rich Low_complexity Low_complexity 1 29 0 5 1297 258 306 31 98 chr4 93345081 93345244 -62284876 - MLT1B LTR MaLR -174 216 65 5 1297 211 422 14 0 chr4 93345504 93345651 -62284469 + MIR3 SINE MIR 52 200 -8 5 1297 793 138 7 7 chr4 93346872 93347018 -62283102 + CT-rich Low_complexity Low_complexity 1 146 0 5 1297 219 69 0 0 chr4 93347021 93347050 -62283070 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1297 869 223 11 32 chr4 93347095 93347285 -62282835 - B3 SINE B2 -25 191 6 5 1297 349 328 15 28 chr4 93347431 93347588 -62282532 - B3A SINE B2 -25 170 27 5 1297 8602 59 2 1 chr4 93347588 93349402 -62280718 - L1Md_F2 LINE L1 -4 6578 4762 5 1297 506 311 29 91 chr4 93349828 93350037 -62280083 - B3A SINE B2 0 198 3 5 1297 219 103 0 0 chr4 93351911 93351950 -62278170 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1297 774 226 0 0 chr4 93352811 93352957 -62277163 + B1_Mus1 SINE Alu 2 147 -1 5 1297 224 30 30 0 chr4 93352960 93352993 -62277127 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1297 3618 267 51 25 chr4 93353157 93354458 -62275662 + RMER1A Other Other 1 788 -242 5 1297 495 0 0 0 chr4 93354458 93354513 -62275607 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1297 3618 219 77 0 chr4 93354513 93354670 -62275450 + RMER1A Other Other 789 1038 -28 5 1297 630 215 7 56 chr4 93357557 93357700 -62272420 + B1_Mus2 SINE Alu 10 145 -2 5 1297 422 259 128 66 chr4 93358365 93358576 -62271544 + MLT1A0 LTR MaLR 5 228 -137 5 1297 23 33 0 0 chr4 93358965 93358995 -62271125 + AT_rich Low_complexity Low_complexity 1 30 0 5 1297 195 271 55 41 chr4 93359213 93359286 -62270834 - MIRb SINE MIR -157 111 38 5 1297 395 225 0 18 chr4 93359747 93359860 -62270260 - Lx9 LINE L1 -8 7636 7526 5 1297 35413 45 0 5 chr4 93359918 93365348 -62264772 + L1Md_T LINE L1 92 5589 -297 5 1297 8434 34 0 0 chr4 93365348 93366344 -62263776 + L1Md_T LINE L1 5590 6585 0 5 1297 39 60 0 0 chr4 93366406 93366473 -62263647 + AT_rich Low_complexity Low_complexity 1 67 0 5 1297 240 310 99 0 chr4 93367494 93367565 -62262555 + B4A SINE B4 137 214 -78 5 1297 417 39 0 0 chr4 93367660 93367711 -62262409 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1297 5605 246 56 13 chr4 93369012 93370418 -62259702 + Lx7 LINE L1 5958 7424 -272 5 1297 32790 36 0 0 chr4 93370421 93375559 -62254561 + L1Md_Gf LINE L1 66 5301 -585 5 1297 21 0 0 0 chr4 93375607 93375628 -62254492 + GC_rich Low_complexity Low_complexity 1 21 0 5 1297 231 61 0 0 chr4 93375736 93375769 -62254351 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1297 204 67 0 0 chr4 93375788 93375818 -62254302 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1297 263 221 14 14 chr4 93375818 93375887 -62254233 - RLTR31_Mm LTR ERVK -6 555 487 5 1297 2005 145 58 0 chr4 93375892 93376217 -62253903 - RLTR17 LTR ERVK -106 586 243 5 1297 378 61 0 0 chr4 93376372 93376421 -62253699 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1297 687 46 0 0 chr4 93376453 93376540 -62253580 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 5 1297 606 291 76 9 chr4 93377872 93378097 -62252023 - RMER15 LTR ERVL 0 575 336 5 1297 684 242 26 49 chr4 93378421 93378647 -62251473 - RMER15-int LTR ERVL -110 4889 4669 5 1297 4794 136 93 4 chr4 93379008 93379810 -62250310 - Lx4A LINE L1 -73 6985 6112 5 1297 23 54 0 0 chr4 93379908 93379945 -62250175 + AT_rich Low_complexity Low_complexity 1 37 0 5 1297 21 36 0 0 chr4 93380838 93380866 -62249254 + AT_rich Low_complexity Low_complexity 1 28 0 5 1297 378 0 0 0 chr4 93380969 93381011 -62249109 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1297 335 295 0 0 chr4 93381015 93381093 -62249027 - Lx8 LINE L1 -285 7188 7111 5 1297 189 0 0 0 chr4 93381544 93381565 -62248555 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1297 24 32 0 0 chr4 93382369 93382400 -62247720 + AT_rich Low_complexity Low_complexity 1 31 0 5 1297 22 0 0 0 chr4 93383166 93383188 -62246932 + AT_rich Low_complexity Low_complexity 1 22 0 5 1297 642 26 0 0 chr4 93383855 93383931 -62246189 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 5 1297 320 299 37 0 chr4 93386132 93386239 -62243881 - PB1D7 SINE Alu -7 113 3 5 1297 368 214 93 46 chr4 93387561 93387669 -62242451 - MLT1I LTR MaLR -6 405 293 5 1297 269 349 22 36 chr4 93387793 93387930 -62242190 + B1F2 SINE Alu 5 139 -10 5 1297 24 32 0 0 chr4 93388977 93389008 -62241112 + AT_rich Low_complexity Low_complexity 1 31 0 5 1297 810 145 254 32 chr4 93389540 93389596 -62240524 - URR1A DNA MER1_type 0 226 166 5 1297 3215 58 2 0 chr4 93389596 93389991 -62240129 + MTA_Mm LTR MaLR 1 396 0 5 1297 810 145 254 32 chr4 93389991 93390119 -62240001 - URR1A DNA MER1_type -61 165 1 5 1297 392 318 28 92 chr4 93390871 93391197 -62238923 + Lx8 LINE L1 7151 7455 -18 5 1297 271 320 46 23 chr4 93392031 93392162 -62237958 + MIRb SINE MIR 121 254 -14 5 1297 4682 51 5 2 chr4 93392419 93393004 -62237116 + L1_Mus1 LINE L1 5981 6567 0 5 1297 240 170 0 0 chr4 93394210 93394263 -62235857 + T-rich Low_complexity Low_complexity 1 53 0 5 1297 879 9 0 0 chr4 93394263 93394368 -62235752 - B1_Mm SINE Alu 0 147 43 5 1297 304 221 20 59 chr4 93394285 93394386 -62235734 - RLTR25B LTR ERVK -507 521 425 5 1297 2006 237 45 73 chr4 93395288 93395701 -62234419 + RMER2 LTR ERV1 2 388 -179 5 1297 1840 107 48 17 chr4 93395701 93395995 -62234125 - Lx LINE L1 -1 6653 6351 5 1297 2006 237 45 73 chr4 93395995 93396159 -62233961 + RMER2 LTR ERV1 389 563 -4 5 1297 950 278 42 52 chr4 93396579 93396974 -62233146 + MTE2a LTR MaLR 10 405 -14 5 1297 224 352 186 25 chr4 93397318 93397872 -62232248 + L2 LINE L2 2439 3081 -338 5 1297 8900 126 30 8 chr4 93399089 93400556 -62229564 - Lx2 LINE L1 -1 6996 5499 5 1297 3093 31 3 0 chr4 93400556 93400912 -62229208 + IAPEY2_LTR LTR ERVK 1 357 0 5 1297 3188 176 18 26 chr4 93400912 93401148 -62228972 - Lx2 LINE L1 -385 5498 5267 5 1297 491 221 0 0 chr4 93401273 93401359 -62228761 - B1_Mur1 SINE Alu -18 131 46 5 1297 760 241 94 51 chr4 93401361 93401615 -62228505 - Lx9 LINE L1 -350 7294 7030 5 1297 568 162 18 0 chr4 93401617 93401728 -62228392 + Lx9 LINE L1 7383 7495 -149 5 1297 342 138 0 0 chr4 93401732 93401790 -62228330 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1297 714 143 0 0 chr4 93401835 93401954 -62228166 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1297 248 203 16 0 chr4 93401954 93402018 -62228102 + Lx9 LINE L1 7569 7633 -11 5 1297 294 143 0 0 chr4 93402082 93402099 -62228021 + (A)n Simple_repeat Simple_repeat 1 17 0 5 1297 1226 54 0 0 chr4 93402099 93402247 -62227873 + B1_Mus1 SINE Alu 1 148 0 5 1297 294 143 0 0 chr4 93402247 93402285 -62227835 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1297 3460 15 5 0 chr4 93402706 93403100 -62227020 - MTA_Mm LTR MaLR 0 396 1 5 1297 9065 35 4 1 chr4 93403100 93404195 -62225925 - MTA_Mm-int LTR MaLR 0 1098 1 5 1297 3460 15 5 0 chr4 93404195 93404589 -62225531 - MTA_Mm LTR MaLR 0 396 1 5 1297 572 281 40 20 chr4 93405586 93405735 -62224385 - ETnERV2-int LTR ERVK -185 7221 7070 5 1297 10668 107 8 31 chr4 93405955 93408515 -62221605 - L1_Mus3 LINE L1 0 6638 4145 5 1297 1086 207 60 63 chr4 93408515 93408834 -62221286 - RMER17A LTR ERVK 0 751 434 5 1297 316 106 0 0 chr4 93408822 93408869 -62221251 - RMER17A LTR ERVK -704 47 1 5 1297 2660 113 2 5 chr4 93408869 93409279 -62220841 - L1_Mus3 LINE L1 -1733 4150 3742 5 1297 237 33 0 0 chr4 93409506 93409536 -62220584 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1297 262 330 57 52 chr4 93409968 93410160 -62219960 + B2_Mm2 SINE B2 1 193 -2 5 1297 928 273 9 9 chr4 93411411 93411622 -62218498 - B3 SINE B2 0 216 6 5 1297 729 194 7 14 chr4 93411688 93411829 -62218291 + MTD LTR MaLR 1 140 -279 5 1297 22 0 0 0 chr4 93412743 93412765 -62217355 + AT_rich Low_complexity Low_complexity 1 22 0 5 1297 21 0 0 0 chr4 93413238 93413259 -62216861 + AT_rich Low_complexity Low_complexity 1 21 0 5 1297 363 44 0 0 chr4 93413993 93414038 -62216082 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1297 1111 66 0 0 chr4 93414038 93414175 -62215945 - B1_Mus1 SINE Alu -10 138 2 5 1297 983 118 59 6 chr4 93414276 93414446 -62215674 - L1Md_F2 LINE L1 0 6582 6404 5 1297 547 320 66 6 chr4 93414490 93414672 -62215448 - MTEb LTR MaLR 0 379 187 5 1297 3115 79 2 0 chr4 93414682 93415088 -62215032 + L1_Mus1 LINE L1 6157 6563 -4 5 1297 21 0 0 0 chr4 93415144 93415165 -62214955 + AT_rich Low_complexity Low_complexity 1 21 0 5 1297 602 285 46 0 chr4 93415870 93416021 -62214099 + RSINE1 SINE B4 6 163 -2 5 1297 224 245 0 0 chr4 93416021 93416074 -62214046 + (TAA)n Simple_repeat Simple_repeat 3 55 0 5 1297 741 105 28 0 chr4 93416205 93416348 -62213772 - RMER17B LTR ERVK -498 460 314 5 1297 355 335 51 42 chr4 93416416 93416622 -62213498 + LTR50 LTR ERVL 33 236 -295 5 1297 257 291 58 0 chr4 93416867 93416970 -62213150 + LTR50 LTR ERVL 406 514 -6 5 1297 474 344 20 62 chr4 93417055 93417250 -62212870 + B3A SINE B2 6 192 -6 5 1297 186 189 27 0 chr4 93417305 93417342 -62212778 + MIR SINE MIR 94 131 -131 5 1297 324 302 88 18 chr4 93418517 93418932 -62211188 + L1M5 LINE L1 3707 4148 -1998 5 1297 267 224 28 0 chr4 93418962 93419069 -62211051 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1297 374 0 0 21 chr4 93419260 93419307 -62210813 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 5 1297 1115 75 0 0 chr4 93419311 93419458 -62210662 - B1_Mm SINE Alu 0 147 1 6 1297 252 77 0 0 chr4 93419527 93419566 -62210554 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1297 380 263 18 0 chr4 93419569 93419581 -62210539 + L1M5 LINE L1 5709 5722 -622 5 1297 3808 100 0 0 chr4 93419581 93420099 -62210021 - L1_Mus1 LINE L1 -1 6566 6049 6 1297 2806 64 0 0 chr4 93420099 93420458 -62209662 + L1_Mus1 LINE L1 5692 6050 -517 6 1297 507 366 28 64 chr4 93424673 93425000 -62205120 + L2 LINE L2 1269 1583 -1836 6 1297 1492 111 13 0 chr4 93425533 93425767 -62204353 + L1_Mus3 LINE L1 6401 6637 -1 6 1297 693 345 168 7 chr4 93425777 93426212 -62203908 + LTR69 LTR ERVL 82 586 -2 6 1297 265 281 43 33 chr4 93428128 93428220 -62201900 + MTE2a LTR MaLR 275 367 -12 6 1297 619 243 158 11 chr4 93428649 93428676 -62201444 + MTD LTR MaLR 1 27 -392 6 1297 3609 81 51 2 chr4 93428676 93429182 -62200938 + L1_Mus3 LINE L1 6105 6635 -3 6 1297 619 259 146 17 chr4 93429182 93429365 -62200755 + MTD LTR MaLR 28 215 -164 6 1297 3002 78 47 18 chr4 93429365 93429808 -62200312 - Lx3_Mus LINE L1 -727 6282 5827 6 1297 1623 90 28 20 chr4 93429808 93430058 -62200062 + Lx3_Mus LINE L1 6758 7009 0 6 1297 965 245 18 5 chr4 93430080 93430301 -62199819 + MTD LTR MaLR 196 419 0 6 1297 312 379 115 60 chr4 93431739 93432140 -62197980 + MLT1C LTR MaLR 8 430 -37 6 1297 248 170 0 19 chr4 93432231 93432285 -62197835 + CT-rich Low_complexity Low_complexity 2 54 0 6 1297 228 281 58 58 chr4 93433552 93433639 -62196481 + LTR82B Low_complexity ERVL 114 200 -630 6 1297 420 20 0 0 chr4 93434773 93434822 -62195298 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1297 2071 248 37 6 chr4 93435361 93435843 -62194277 + RMER20B LTR ERVK 34 530 -97 6 1297 327 250 9 26 chr4 93435977 93436084 -62194036 + (CATATA)n Simple_repeat Simple_repeat 1 107 0 6 1297 269 26 26 0 chr4 93436084 93436122 -62193998 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 6 1297 327 250 9 26 chr4 93436122 93436129 -62193991 + (CATATA)n Simple_repeat Simple_repeat 6 11 0 6 1297 200 295 159 19 chr4 93436663 93436770 -62193350 - MIRb SINE MIR -66 202 81 6 1297 302 349 174 39 chr4 93439006 93439316 -62190804 - LTR68 LTR ERV1 -277 463 112 6 1297 1790 107 15 4 chr4 93440394 93440657 -62189463 - ORR1A2 LTR MaLR -61 266 1 6 1297 22 35 0 0 chr4 93441085 93441114 -62189006 + AT_rich Low_complexity Low_complexity 1 29 0 6 1297 256 224 211 0 chr4 93441124 93441276 -62188844 - Lx9 LINE L1 -45 7599 7416 6 1297 31851 24 0 0 chr4 93441271 93447913 -62182207 - L1Md_T LINE L1 0 6585 2 6 1297 36 23 0 0 chr4 93448069 93448112 -62182008 + AT_rich Low_complexity Low_complexity 1 43 0 6 1297 24 32 0 0 chr4 93448692 93448723 -62181397 + AT_rich Low_complexity Low_complexity 1 31 0 6 1297 8548 10 0 0 chr4 93449023 93449993 -62180127 + L1Md_A LINE L1 4617 5586 -297 6 1297 8823 13 0 0 chr4 93449993 93450989 -62179131 + L1Md_A LINE L1 5587 6582 0 6 1297 1912 143 3 7 chr4 93451644 93451946 -62178174 - ORR1A2 LTR MaLR 0 327 27 6 1297 9491 156 63 17 chr4 93451955 93453828 -62176292 - ORR1A2-int LTR MaLR -2 1961 1 6 1297 2221 91 3 59 chr4 93453834 93454174 -62175946 - ORR1A2 LTR MaLR -6 321 1 6 1298 21 0 0 0 chr4 93454527 93454548 -62175572 + AT_rich Low_complexity Low_complexity 1 21 0 6 1298 22 0 0 0 chr4 93454934 93454956 -62175164 + AT_rich Low_complexity Low_complexity 1 22 0 6 1298 23 0 0 0 chr4 93456032 93456055 -62174065 + AT_rich Low_complexity Low_complexity 1 23 0 6 1298 1041 276 109 16 chr4 93456092 93456405 -62173715 - MTEb LTR MaLR -10 369 28 6 1298 22 35 0 0 chr4 93456532 93456561 -62173559 + AT_rich Low_complexity Low_complexity 1 29 0 6 1298 431 269 79 57 chr4 93456880 93457189 -62172931 - RLTR10D LTR ERVK 0 411 40 6 1298 377 299 46 23 chr4 93458085 93458215 -62171905 - RMER15 LTR ERVL -21 554 422 6 1298 995 302 44 6 chr4 93458748 93459068 -62171052 + Lx7 LINE L1 6994 7325 -371 6 1298 354 231 34 92 chr4 93459116 93459235 -62170885 + Lx7 LINE L1 7565 7676 -20 6 1298 231 61 0 0 chr4 93462819 93462852 -62167268 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1298 204 67 0 0 chr4 93462871 93462901 -62167219 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1298 263 221 14 14 chr4 93462901 93462970 -62167150 - RLTR31_Mm LTR ERVK -6 555 487 6 1298 2005 145 58 0 chr4 93462975 93463300 -62166820 - RLTR17 LTR ERVK -106 586 243 6 1298 378 61 0 0 chr4 93463455 93463504 -62166616 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1298 723 44 0 0 chr4 93463536 93463627 -62166493 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 6 1298 606 291 76 9 chr4 93464959 93465184 -62164936 - RMER15 LTR ERVL 0 575 336 6 1298 684 242 26 49 chr4 93465508 93465734 -62164386 - RMER15-int LTR ERVL -110 4889 4669 6 1298 4794 136 93 4 chr4 93466095 93466897 -62163223 - Lx4A LINE L1 -73 6985 6112 6 1298 23 54 0 0 chr4 93466995 93467032 -62163088 + AT_rich Low_complexity Low_complexity 1 37 0 6 1298 21 36 0 0 chr4 93467925 93467953 -62162167 + AT_rich Low_complexity Low_complexity 1 28 0 6 1298 1302 7 0 0 chr4 93468052 93468207 -62161913 + L1Md_T LINE L1 6428 6582 0 6 1298 198 0 0 0 chr4 93468215 93468237 -62161883 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1298 198 103 0 0 chr4 93468309 93468338 -62161782 + (TATG)n Simple_repeat Simple_repeat 2 30 0 6 1298 580 254 56 18 chr4 93468506 93468739 -62161381 + L1_Rod LINE L1 5017 5287 -593 6 1298 23 0 0 0 chr4 93469512 93469535 -62160585 + AT_rich Low_complexity Low_complexity 1 23 0 6 1298 466 226 30 9 chr4 93469718 93469847 -62160273 + PB1D7 SINE Alu 3 130 -19 6 1298 197 225 0 0 chr4 93469848 93469888 -62160232 - L2a LINE L2 -86 3340 3301 6 1298 1525 230 96 20 chr4 93470293 93470779 -62159341 + L1_Rod LINE L1 5274 5748 -99 6 1298 1108 259 24 77 chr4 93470782 93471239 -62158881 + Lx9 LINE L1 5473 5944 -1700 6 1298 1793 182 75 3 chr4 93471241 93471572 -62158548 - ORR1B2 LTR MaLR -12 355 1 6 1298 5736 195 93 8 chr4 93471572 93472672 -62157448 - ORR1B2-int LTR MaLR 0 1509 312 6 1298 270 0 0 0 chr4 93472672 93472702 -62157418 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 6 1298 5736 195 93 8 chr4 93472702 93472991 -62157129 - ORR1B2-int LTR MaLR -1198 311 3 6 1298 1320 69 0 0 chr4 93473023 93473197 -62156923 + L1_Mus1 LINE L1 6394 6567 0 6 1298 1179 202 18 0 chr4 93473223 93473441 -62156679 - ORR1B2 LTR MaLR -29 338 117 6 1298 3478 72 2 2 chr4 93473441 93473934 -62156186 - L1_Mus1 LINE L1 -522 6045 5553 6 1298 364 174 36 136 chr4 93473934 93473965 -62156155 - ORR1B2 LTR MaLR -200 126 93 6 1298 3955 45 32 10 chr4 93473965 93474461 -62155659 + L1_Mus1 LINE L1 6061 6567 0 6 1298 534 91 187 6 chr4 93474461 93474569 -62155551 - ORR1B2 LTR MaLR -244 123 1 6 1298 22 0 0 0 chr4 93474680 93474702 -62155418 + AT_rich Low_complexity Low_complexity 1 22 0 6 1298 561 305 13 50 chr4 93475097 93475256 -62154864 - RSINE1 SINE B4 -1 164 12 6 1298 231 47 0 0 chr4 93476737 93476780 -62153340 - L1_Mus4 LINE L1 -2 6634 6592 6 1298 46 33 0 0 chr4 93477102 93477162 -62152958 + AT_rich Low_complexity Low_complexity 1 60 0 6 1298 37 0 0 0 chr4 93477284 93477321 -62152799 + AT_rich Low_complexity Low_complexity 1 37 0 6 1298 417 20 0 0 chr4 93477424 93477474 -62152646 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1298 284 314 17 115 chr4 93477512 93477576 -62152544 - Lx9 LINE L1 -208 7436 7396 6 1298 1829 5 0 0 chr4 93477576 93477785 -62152335 - L1Md_A LINE L1 0 6582 6374 6 1298 284 314 17 115 chr4 93477785 93477954 -62152166 - Lx9 LINE L1 -249 7395 7226 6 1298 2012 186 53 61 chr4 93478077 93478120 -62152000 - RLTR20B3 LTR ERVK -50 527 485 6 1298 279 114 0 0 chr4 93478120 93478164 -62151956 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1298 2012 186 53 61 chr4 93478164 93478631 -62151489 - RLTR20B3 LTR ERVK -93 484 23 6 1298 1943 286 62 34 chr4 93478656 93479330 -62150790 - Lx9 LINE L1 -594 7050 6358 6 1298 1592 266 25 17 chr4 93479562 93480157 -62149963 - Lx9 LINE L1 -1596 6048 5417 6 1298 21 0 0 0 chr4 93481041 93481062 -62149058 + AT_rich Low_complexity Low_complexity 1 21 0 6 1298 748 229 104 18 chr4 93482453 93482691 -62147429 - MTE2a LTR MaLR 0 379 95 6 1298 852 146 0 0 chr4 93482692 93482829 -62147291 + URR1B DNA MER1_type 89 225 0 6 1298 541 302 45 35 chr4 93482859 93483074 -62147046 - MTE2a LTR MaLR -208 213 5 6 1298 312 298 9 63 chr4 93483815 93483926 -62146194 + Lx8 LINE L1 7062 7166 -307 6 1298 549 323 88 10 chr4 93484563 93484757 -62145363 + B3 SINE B2 1 209 -7 6 1298 422 352 137 35 chr4 93485110 93485494 -62144626 - L2a LINE L2 -289 3137 2735 6 1298 446 175 12 0 chr4 93485537 93485617 -62144503 + RLTR12A LTR ERVK 1 81 -487 6 1298 1242 138 15 0 chr4 93485621 93485817 -62144303 + RLTR12A LTR ERVK 367 565 -3 6 1298 849 281 25 0 chr4 93486362 93486565 -62143555 + B3 SINE B2 1 208 -8 6 1298 273 344 51 20 chr4 93487683 93487781 -62142339 - RSINE1 SINE B4 0 165 65 6 1298 29 28 0 0 chr4 93488305 93488341 -62141779 + AT_rich Low_complexity Low_complexity 1 36 0 6 1298 1606 289 108 69 chr4 93488341 93489199 -62140921 - Lx8 LINE L1 -8 7465 6574 6 1298 1786 223 11 3 chr4 93489419 93489792 -62140328 - ORR1C1 LTR MaLR 0 378 3 6 1298 802 287 31 23 chr4 93490213 93490470 -62139650 + RMER15 LTR ERVL 303 561 -14 6 1298 4682 142 2 16 chr4 93490738 93491535 -62138585 - Lx2B LINE L1 -713 5164 4379 6 1298 3779 161 2 6 chr4 93491533 93492176 -62137944 + Lx2B LINE L1 5156 5795 -82 6 1298 2809 166 49 18 chr4 93492155 93492708 -62137412 + Lx2B LINE L1 5930 6499 -501 6 1298 189 224 0 141 chr4 93493169 93493247 -62136873 - MIRb SINE MIR -84 184 118 6 1298 251 276 90 94 chr4 93493274 93493433 -62136687 - L1MD LINE L1 -2083 4063 3906 6 1298 252 0 0 0 chr4 93493433 93493461 -62136659 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1298 251 276 90 94 chr4 93493461 93493557 -62136563 - L1MD LINE L1 -2241 3905 3809 6 1298 275 189 189 0 chr4 93493573 93493613 -62136507 + RMER4B LTR ERVK 17 56 -410 6 1298 552 15 0 0 chr4 93493613 93493678 -62136442 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1298 1459 148 92 42 chr4 93493678 93493963 -62136157 + RMER4B LTR ERVK 57 435 -150 6 1298 1603 236 88 11 chr4 93493978 93494457 -62135663 + RMER20B LTR ERVK 1 543 -84 6 1298 375 200 106 0 chr4 93494494 93494579 -62135541 + RMER4B LTR ERVK 480 573 -12 6 1298 233 287 141 42 chr4 93494605 93494889 -62135231 - L1MC LINE L1 -2370 3776 3465 6 1298 275 324 182 36 chr4 93496182 93496429 -62133691 - B4A SINE B4 -8 284 2 6 1298 561 42 0 0 chr4 93496641 93496713 -62133407 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1298 199 50 0 70 chr4 93497453 93497496 -62132624 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1298 349 300 99 8 chr4 93497569 93497690 -62132430 - MamRep605 Unknown Unknown -49 827 696 6 1298 252 0 0 0 chr4 93498184 93498212 -62131908 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1298 23 33 0 0 chr4 93499150 93499180 -62130940 + AT_rich Low_complexity Low_complexity 1 30 0 6 1298 1194 270 97 3 chr4 93499381 93499712 -62130408 - ORR1D2 LTR MaLR 0 370 9 6 1298 507 308 30 24 chr4 93500001 93500193 -62129927 + MIR SINE MIR 33 232 -36 1 1298 225 0 0 0 chr4 93500536 93500561 -62129559 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1298 785 148 14 14 chr4 93500561 93500697 -62129423 + URR1A DNA MER1_type 89 225 -1 3 1298 265 320 0 0 chr4 93500909 93500987 -62129133 - RLTR33 LTR ERVK -85 593 516 4 1298 714 176 50 21 chr4 93501051 93501227 -62128893 + RLTR31_Mm LTR ERVK 1 283 -162 5 1298 356 310 48 61 chr4 93501248 93501413 -62128707 + HAL1-3A_ME LINE L1 2282 2444 -414 6 1298 343 290 48 61 chr4 93501388 93501553 -62128567 + HAL1-3A_ME LINE L1 2282 2444 -414 6 1298 246 194 62 0 chr4 93501553 93501713 -62128407 + GA-rich Low_complexity Low_complexity 5 174 0 7 1298 1980 207 38 45 chr4 93501748 93502280 -62127840 + RLTR31_Mur LTR ERVK 26 553 0 8 1298 211 28 27 27 chr4 93502458 93502495 -62127625 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 9 1298 2061 62 0 0 chr4 93503015 93503272 -62126848 + L1_Mus1 LINE L1 6309 6565 -2 1 1298 2942 93 9 9 chr4 93503302 93503758 -62126362 - MusHAL1 LINE L1 -1066 1646 1191 1 1298 2426 108 19 3 chr4 93503758 93504129 -62125991 + Lx LINE L1 6269 6645 -9 1 1298 269 323 107 30 chr4 93505227 93505396 -62124724 - MER20 DNA MER1_type -37 182 1 1 1298 198 0 0 0 chr4 93506024 93506046 -62124074 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1298 23 0 0 0 chr4 93506674 93506697 -62123423 + AT_rich Low_complexity Low_complexity 1 23 0 1 1298 206 204 0 39 chr4 93506833 93506884 -62123236 + GA-rich Low_complexity Low_complexity 3 51 0 1 1298 288 295 65 8 chr4 93506962 93507085 -62123035 + MLT1C LTR MaLR 1 130 -260 1 1298 1132 278 31 60 chr4 93507102 93507488 -62122632 - RMER15 LTR ERVL -12 563 189 1 1298 271 192 25 99 chr4 93507517 93507598 -62122522 - RMER15 LTR ERVL -500 75 1 1 1298 312 301 70 70 chr4 93507603 93507691 -62122429 + MLT1C LTR MaLR 139 225 -242 1 1298 297 0 0 0 chr4 93507691 93507724 -62122396 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1298 312 301 70 70 chr4 93507724 93507792 -62122328 + MLT1C LTR MaLR 226 295 -172 1 1298 22 0 0 0 chr4 93507885 93507907 -62122213 + AT_rich Low_complexity Low_complexity 1 22 0 2 1298 382 343 0 49 chr4 93508021 93508165 -62121955 + Lx8 LINE L1 7207 7343 -130 2 1298 510 340 32 13 chr4 93509081 93509236 -62120884 + RSINE1 SINE B4 4 161 -4 2 1298 324 174 0 0 chr4 93509623 93509715 -62120405 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1298 571 318 45 38 chr4 93509855 93510584 -62119536 - L1M2 LINE L1 -482 5815 5079 2 1298 3135 38 0 0 chr4 93510587 93510959 -62119161 + L1Md_T LINE L1 6209 6580 -2 2 1298 252 0 0 0 chr4 93510988 93511016 -62119104 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1298 802 0 0 20 chr4 93511096 93511196 -62118924 + (TTAGGG)n Simple_repeat Simple_repeat 3 100 0 2 1298 247 287 19 0 chr4 93511371 93511479 -62118641 - L1M2 LINE L1 -1317 4826 4717 2 1298 213 94 0 0 chr4 93511735 93511767 -62118353 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2 1298 963 142 0 0 chr4 93511959 93512121 -62117999 + (TA)n Simple_repeat Simple_repeat 1 162 0 2 1298 426 111 12 36 chr4 93513124 93513208 -62116912 + Lx LINE L1 5382 5463 -420 3 1298 994 116 0 39 chr4 93513209 93513362 -62116758 + B1_Mus1 SINE Alu 2 148 0 3 1298 366 100 0 0 chr4 93513364 93513424 -62116696 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 3 1298 6897 120 9 1 chr4 93513426 93514625 -62115495 + Lx LINE L1 5446 6653 -1 3 1298 185 320 68 29 chr4 93515254 93515357 -62114763 - MIRb SINE MIR -21 247 141 3 1298 252 0 0 0 chr4 93515436 93515464 -62114656 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1298 198 219 0 0 chr4 93515747 93515811 -62114309 + T-rich Low_complexity Low_complexity 1 64 0 3 1298 1226 211 18 4 chr4 93517099 93517328 -62112792 + RMER19C LTR ERVK 253 484 -127 3 1298 15154 26 0 0 chr4 93517328 93519863 -62110257 - L1Md_T LINE L1 -1 6581 4047 3 1298 671 168 23 39 chr4 93519865 93519995 -62110125 + RMER19C LTR ERVK 484 611 0 3 1298 310 358 36 7 chr4 93520393 93520531 -62109589 - L2 LINE L2 -2043 1376 1235 3 1298 271 368 0 64 chr4 93520531 93520656 -62109464 - PB1D9 SINE Alu -2 118 2 3 1298 1664 329 64 28 chr4 93521156 93522003 -62108117 + Lx7 LINE L1 6347 7223 -473 4 1298 225 208 75 0 chr4 93522364 93522417 -62107703 + MLT1A LTR MaLR 10 66 -308 4 1298 371 269 67 9 chr4 93522629 93522734 -62107386 - L3 LINE CR1 -164 4325 4215 4 1298 191 279 136 25 chr4 93523129 93523210 -62106910 + L3 LINE CR1 4317 4406 -83 4 1298 1067 282 65 107 chr4 93523906 93524360 -62105760 + Lx8 LINE L1 4941 5392 -488 4 1298 1092 116 0 0 chr4 93524360 93524507 -62105613 + B1_Mus2 SINE Alu 1 147 0 4 1298 1067 282 65 107 chr4 93524507 93524941 -62105179 + Lx8 LINE L1 5393 5792 -88 4 1298 1110 164 95 16 chr4 93524940 93525182 -62104938 + L1VL2 LINE L1 124 384 -5951 4 1298 21625 151 26 9 chr4 93525181 93530028 -62100092 + Lx LINE L1 1752 6651 -3 4 1298 278 262 114 8 chr4 93530046 93530169 -62099951 + Lx8 LINE L1 5780 5915 -1558 4 1298 766 332 87 14 chr4 93530434 93530847 -62099273 + Lx8 LINE L1 6787 7229 -244 4 1298 430 297 22 16 chr4 93531160 93531345 -62098775 + L1M4c LINE L1 26 211 -6173 4 1298 220 255 0 0 chr4 93531399 93531450 -62098670 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 4 1298 591 27 0 0 chr4 93531451 93531524 -62098596 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1298 249 183 33 0 chr4 93531525 93531585 -62098535 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1298 350 327 31 84 chr4 93531615 93531936 -62098184 + L1M4c LINE L1 326 629 -5755 4 1298 953 283 122 39 chr4 93531964 93532481 -62097639 + L1M4c LINE L1 795 1372 -5012 4 1298 6188 124 87 11 chr4 93532481 93533525 -62096595 + Lx3C LINE L1 5842 6964 -12 5 1298 486 0 0 0 chr4 93533525 93533579 -62096541 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1298 953 283 122 39 chr4 93533579 93534087 -62096033 + L1M4c LINE L1 1373 1905 -4479 4 1298 537 274 43 77 chr4 93534304 93534344 -62095776 + L1MB3 LINE L1 5869 5908 -275 5 1298 213 39 0 0 chr4 93534344 93534370 -62095750 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1298 537 274 43 77 chr4 93534370 93534653 -62095467 + L1MB3 LINE L1 5909 6181 -2 5 1298 2798 128 95 22 chr4 93536443 93536947 -62093173 + RMER2 LTR ERV1 1 541 -26 5 1298 270 0 0 0 chr4 93537581 93537611 -62092509 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1298 486 0 0 0 chr4 93537611 93537664 -62092456 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1298 219 69 0 0 chr4 93537664 93537692 -62092428 + (CG)n Simple_repeat Simple_repeat 2 30 0 5 1298 185 273 69 52 chr4 93538043 93538101 -62092019 - L3 LINE CR1 -510 3979 3921 6 1298 204 40 0 0 chr4 93538229 93538254 -62091866 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 1298 459 152 0 0 chr4 93538298 93538377 -62091743 + CT-rich Low_complexity Low_complexity 1 79 0 6 1298 997 71 43 0 chr4 93538380 93538520 -62091600 - B1_Mm SINE Alu 0 147 2 6 1298 22 0 0 0 chr4 93539022 93539044 -62091076 + AT_rich Low_complexity Low_complexity 1 22 0 6 1298 820 346 51 14 chr4 93541012 93541308 -62088812 + MTE2b LTR MaLR 1 307 -72 6 1298 2494 58 0 3 chr4 93541310 93541623 -62088497 + L1_Mus1 LINE L1 6256 6567 0 6 1298 249 242 116 0 chr4 93541642 93541690 -62088430 - MER67C LTR ERV1 -2 709 658 6 1298 441 0 0 0 chr4 93541690 93541739 -62088381 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1298 249 242 116 0 chr4 93541739 93541785 -62088335 - MER67C LTR ERV1 -54 657 605 6 1298 299 331 22 95 chr4 93541758 93541895 -62088225 - PB1 SINE Alu 0 127 1 6 1298 290 364 110 7 chr4 93542529 93542684 -62087436 - MIRb SINE MIR -76 192 22 7 1298 23 0 0 0 chr4 93543148 93543171 -62086949 + AT_rich Low_complexity Low_complexity 1 23 0 7 1298 582 150 22 8 chr4 93543201 93543701 -62086419 + (TG)n Simple_repeat Simple_repeat 1 507 0 7 1298 316 303 69 91 chr4 93543712 93544017 -62086103 - B4 SINE B4 -14 278 3 7 1298 510 17 0 0 chr4 93544503 93544562 -62085558 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1298 240 59 0 0 chr4 93545581 93545615 -62084505 + (TCTCTG)n Simple_repeat Simple_repeat 6 39 0 7 1298 609 40 0 0 chr4 93545629 93545705 -62084415 + (TCTCC)n Simple_repeat Simple_repeat 1 76 0 7 1298 185 35 0 65 chr4 93545712 93545743 -62084377 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 7 1298 567 0 0 0 chr4 93546726 93546789 -62083331 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1298 195 309 163 12 chr4 93549664 93549865 -62080255 + L2b LINE L2 3183 3423 -3 7 1298 249 57 0 0 chr4 93550133 93550168 -62079952 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1298 425 283 33 0 chr4 93550553 93550645 -62079475 + RSINE1 SINE B4 35 129 -36 8 1298 957 92 0 0 chr4 93550663 93550793 -62079327 - ORR1A2 LTR MaLR -5 322 193 8 1298 264 272 141 0 chr4 93550837 93550929 -62079191 + MER3 DNA MER1_type 104 208 -1 8 1298 216 0 0 0 chr4 93551217 93551241 -62078879 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1298 3676 56 2 69 chr4 93551243 93551763 -62078357 - L1_Mus2 LINE L1 -10 6556 6072 8 1298 633 294 36 133 chr4 93551790 93551986 -62078134 - B3A SINE B2 -16 177 1 8 1298 239 203 0 13 chr4 93553940 93554015 -62076105 + CT-rich Low_complexity Low_complexity 3 76 0 8 1298 258 257 0 119 chr4 93554088 93554172 -62075948 - MER5A DNA MER1_type -9 180 107 8 1298 27 0 0 0 chr4 93554331 93554358 -62075762 + AT_rich Low_complexity Low_complexity 1 27 0 8 1298 257 0 30 0 chr4 93554366 93554399 -62075721 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 9 1298 933 73 0 53 chr4 93554401 93554588 -62075532 + (GGGGA)n Simple_repeat Simple_repeat 1 177 0 9 1298 1699 184 80 40 chr4 93554619 93555043 -62075077 - RMER10A LTR ERVL -1 441 1 9 1298 35089 44 3 3 chr4 93555876 93561116 -62069004 + L1Md_T LINE L1 256 5589 -297 9 1298 8419 33 0 0 chr4 93561116 93562112 -62068008 + L1Md_T LINE L1 5590 6585 0 9 1298 186 103 0 0 chr4 93562589 93562618 -62067502 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1298 2730 304 96 26 chr4 93563285 93564290 -62065830 + Lx8 LINE L1 6229 7303 -170 9 1298 198 87 65 0 chr4 93564297 93564343 -62065777 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1298 211 309 93 0 chr4 93564546 93564643 -62065477 + MIRb SINE MIR 92 197 -71 9 1298 210 308 0 37 chr4 93564782 93564863 -62065257 - MIR3 SINE MIR -6 202 125 9 1298 568 293 17 45 chr4 93565120 93565354 -62064766 + MIRb SINE MIR 33 260 -8 9 1298 362 274 147 35 chr4 93566143 93566313 -62063807 - B3A SINE B2 -9 189 1 1 1298 252 221 65 37 chr4 93567354 93567462 -62062658 + Lx8 LINE L1 7359 7469 -4 1 1298 230 279 32 105 chr4 93568214 93568338 -62061782 - MIRc SINE MIR -122 146 32 1 1298 225 94 0 0 chr4 93568993 93569025 -62061095 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1298 243 208 37 49 chr4 93569444 93569516 -62060604 - Lx8 LINE L1 0 7473 7402 1 1298 2851 37 7 109 chr4 93569516 93569946 -62060174 - RLTR10 LTR ERVK -4 386 1 1 1298 8475 32 0 2 chr4 93569954 93570945 -62059175 - RLTR10-int LTR ERVK -9 1978 990 1 1298 365 232 62 39 chr4 93571027 93571157 -62058963 - RLTR10-int LTR ERVK -5987 1594 1462 1 1298 7812 35 13 8 chr4 93571221 93572175 -62057945 - RLTR10-int LTR ERVK -989 998 41 1 1298 2915 36 7 108 chr4 93572185 93572619 -62057501 - RLTR10 LTR ERVK 0 390 1 1 1298 1153 281 86 4 chr4 93572636 93573094 -62057026 - Lx8 LINE L1 -100 7373 6837 1 1298 218 300 33 22 chr4 93573951 93574043 -62056077 - BC1_Mm scRNA scRNA -58 94 2 1 1298 26 50 0 0 chr4 93574360 93574400 -62055720 + AT_rich Low_complexity Low_complexity 1 40 0 1 1298 330 129 0 0 chr4 93574509 93574571 -62055549 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1298 1572 270 119 0 chr4 93574626 93575081 -62055039 - Lx7 LINE L1 -382 7314 6806 1 1298 2704 228 73 51 chr4 93575053 93576011 -62054109 + L1_Mur3 LINE L1 4413 5391 -489 1 1298 470 276 71 11 chr4 93576162 93576345 -62053775 - B3A SINE B2 -1 197 4 1 1298 813 106 19 12 chr4 93576652 93576814 -62053306 + (CAGAA)n Simple_repeat Simple_repeat 5 167 0 1 1298 385 238 57 93 chr4 93576821 93576956 -62053164 + B1F SINE Alu 1 133 -17 1 1298 292 279 81 8 chr4 93577066 93577189 -62052931 - MER58C DNA MER1_type -1 214 83 1 1298 1383 187 121 65 chr4 93577189 93577295 -62052825 - L1_Mur3 LINE L1 -1133 4747 4625 1 1298 423 0 0 0 chr4 93577295 93577342 -62052778 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1298 1383 187 121 65 chr4 93577342 93577664 -62052456 - L1_Mur3 LINE L1 -1256 4624 4295 1 1298 779 311 12 0 chr4 93577672 93577916 -62052204 + Lx7 LINE L1 7066 7312 -384 1 1298 29 28 0 0 chr4 93578087 93578123 -62051997 + AT_rich Low_complexity Low_complexity 1 36 0 1 1298 2014 216 86 105 chr4 93578230 93578937 -62051183 + Lx7 LINE L1 7003 7696 0 1 1298 260 159 14 42 chr4 93579181 93579253 -62050867 + T-rich Low_complexity Low_complexity 2 71 0 1 1298 3264 247 30 16 chr4 93579255 93579812 -62050308 - Lx6 LINE L1 0 7460 6904 1 1298 657 0 0 0 chr4 93579812 93579885 -62050235 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1298 3264 247 30 16 chr4 93579885 93580089 -62050031 - Lx6 LINE L1 -557 6903 6688 1 1298 1918 252 66 10 chr4 93580096 93580613 -62049507 - Lx6 LINE L1 -1006 6454 5909 1 1298 836 148 49 82 chr4 93580613 93580856 -62049264 + L1_Mur3 LINE L1 3127 3361 -2519 1 1298 2713 132 63 42 chr4 93580856 93581117 -62049003 - RLTR21 LTR ERVK 0 1572 1305 1 1298 279 0 0 0 chr4 93581117 93581148 -62048972 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1298 513 0 0 0 chr4 93581148 93581204 -62048916 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1298 6432 171 50 30 chr4 93581204 93582598 -62047522 - RLTR21 LTR ERVK -268 1304 1 1 1298 3299 170 26 45 chr4 93582598 93583295 -62046825 + L1_Mur3 LINE L1 3356 4039 -1841 1 1298 26 50 0 0 chr4 93583868 93583908 -62046212 + AT_rich Low_complexity Low_complexity 1 40 0 1 1298 21 0 0 0 chr4 93584171 93584192 -62045928 + AT_rich Low_complexity Low_complexity 1 21 0 1 1298 8445 125 34 16 chr4 93584633 93584726 -62045394 - Lx3B LINE L1 -7 6966 6878 1 1298 194 0 39 0 chr4 93584726 93584752 -62045368 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 1 162 8445 119 25 11 chr4 93584752 93586108 -62044012 - Lx3B LINE L1 -96 6877 5495 1 1299 383 199 5 0 chr4 93586104 93586194 -62043926 - L1_Mur1 LINE L1 -6231 751 677 1 1299 486 0 0 0 chr4 93586348 93586402 -62043718 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1299 274 61 29 43 chr4 93587606 93587675 -62042445 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 1 1299 1235 34 0 0 chr4 93588037 93588184 -62041936 + B1_Mm SINE Alu 1 147 0 1 1299 180 111 0 0 chr4 93588184 93588211 -62041909 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1299 647 282 83 15 chr4 93589647 93589852 -62040268 - ID_B1 SINE B4 0 224 6 1 1299 196 382 73 36 chr4 93589988 93590208 -62039912 + MIRb SINE MIR 2 229 -39 1 1299 426 312 126 36 chr4 93593512 93593821 -62036299 + Charlie16a DNA MER1_type 6 342 0 1 1299 1353 75 37 5 chr4 93594377 93594566 -62035554 + B2_Mm2 SINE B2 1 195 0 1 1299 1282 96 27 5 chr4 93594578 93594766 -62035354 + B2_Mm1t SINE B2 2 193 0 1 1299 346 277 64 46 chr4 93594889 93595108 -62035012 + MTEa LTR MaLR 100 341 -38 1 1299 270 355 16 8 chr4 93597403 93597528 -62032592 - MIRb SINE MIR -52 216 91 1 1299 28 61 0 0 chr4 93597663 93597712 -62032408 + AT_rich Low_complexity Low_complexity 1 49 0 1 1299 289 275 0 0 chr4 93597970 93598039 -62032081 + CT-rich Low_complexity Low_complexity 4 72 0 1 1299 28 0 0 0 chr4 93598615 93598643 -62031477 + AT_rich Low_complexity Low_complexity 1 28 0 1 1299 19477 65 2 2 chr4 93598746 93601318 -62028802 + L1Md_F2 LINE L1 3014 5586 -297 1 1299 8042 51 1 8 chr4 93601318 93602321 -62027799 + L1Md_F2 LINE L1 5587 6582 0 1 1299 558 0 0 0 chr4 93603683 93603745 -62026375 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1299 407 342 95 5 chr4 93604442 93604642 -62025478 + MLT1F1 LTR MaLR 350 567 -2 1 1299 22 35 0 0 chr4 93605668 93605697 -62024423 + AT_rich Low_complexity Low_complexity 1 29 0 1 1299 222 302 54 31 chr4 93605871 93606001 -62024119 - L3 LINE CR1 -2308 2181 2049 1 1299 234 295 19 112 chr4 93606499 93606606 -62023514 - PB1 SINE Alu -12 115 19 1 1299 181 321 71 0 chr4 93606618 93606702 -62023418 + MIR SINE MIR 118 207 -55 1 1299 1074 255 120 19 chr4 93606762 93607237 -62022883 + L1MA8 LINE L1 5470 5992 -299 1 1299 226 205 0 0 chr4 93607349 93607388 -62022732 + polypyrimidine Low_complexity Low_complexity 4 42 0 1 1299 610 11 42 21 chr4 93607389 93607485 -62022635 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1 1299 967 289 130 33 chr4 93608259 93608893 -62021227 + Lx8 LINE L1 6779 7473 0 1 1299 1192 176 13 31 chr4 93609372 93609600 -62020520 + URR1B DNA MER1_type 1 224 -1 1 1299 301 265 3 3 chr4 93609612 93609693 -62020427 + BC1_Mm scRNA scRNA 5 85 -67 1 1299 21 36 0 0 chr4 93609782 93609810 -62020310 + AT_rich Low_complexity Low_complexity 1 28 0 1 1299 203 333 43 11 chr4 93609821 93609915 -62020205 - MIRb SINE MIR -17 251 155 1 1299 3837 220 24 59 chr4 93614709 93615575 -62014545 - Lx9 LINE L1 0 7644 6813 1 1299 2598 153 0 18 chr4 93615575 93616015 -62014105 - Lx3A LINE L1 -9 6972 6541 1 1299 3837 220 24 59 chr4 93616015 93616158 -62013962 - Lx9 LINE L1 -832 6812 6671 1 1299 593 288 15 55 chr4 93616185 93616387 -62013733 - Lx9 LINE L1 -1139 6505 6312 1 1299 1350 218 10 21 chr4 93616720 93617010 -62013110 + Lx7 LINE L1 7092 7378 -318 1 1299 22 35 0 0 chr4 93617174 93617203 -62012917 + AT_rich Low_complexity Low_complexity 1 29 0 1 1299 219 69 0 0 chr4 93617607 93617636 -62012484 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1299 822 132 11 33 chr4 93617852 93617944 -62012176 + polypurine Low_complexity Low_complexity 2 91 0 1 1299 1245 56 11 11 chr4 93617944 93618124 -62011996 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1299 822 132 11 33 chr4 93618124 93618212 -62011908 + polypurine Low_complexity Low_complexity 92 178 0 1 1299 186 167 0 0 chr4 93618212 93618248 -62011872 + GA-rich Low_complexity Low_complexity 1 36 0 1 1299 2718 83 59 55 chr4 93618355 93618828 -62011292 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1299 3396 72 11 25 chr4 93618830 93619679 -62010441 + IAPEz-int LTR ERVK 3 662 -5819 1 1299 442 66 0 32 chr4 93619679 93619742 -62010378 + IAPEz-int LTR ERVK 1359 1419 -5062 1 1299 1839 111 4 4 chr4 93619731 93619993 -62010127 + IAPEz-int LTR ERVK 2236 2497 -5183 1 1299 918 81 24 0 chr4 93619990 93620113 -62010007 + IAPEz-int LTR ERVK 4785 4910 -2770 1 1299 26096 17 4 0 chr4 93620113 93623059 -62007061 + IAPEz-int LTR ERVK 3525 6481 0 1 1299 2700 94 51 47 chr4 93623063 93623532 -62006588 + IAPLTR2_Mm LTR ERVK 5 475 0 1 1299 186 71 0 0 chr4 93624842 93624870 -62005250 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1299 650 323 43 8 chr4 93625148 93625382 -62004738 - B4A SINE B4 -12 280 39 1 1299 407 294 3 5 chr4 93626184 93626299 -62003821 + B1F SINE Alu 7 120 0 1 1299 210 37 0 0 chr4 93627340 93627367 -62002753 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1299 1257 243 93 6 chr4 93627367 93627723 -62002397 - Lx7 LINE L1 -308 7388 7002 1 1299 397 296 124 24 chr4 93628041 93628397 -62001723 - L1M2 LINE L1 -106 5741 5337 1 1299 678 286 31 138 chr4 93628464 93628984 -62001136 - L1M2 LINE L1 -873 5270 4807 1 1299 216 0 0 0 chr4 93629096 93629120 -62001000 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1299 356 352 99 29 chr4 93629147 93629460 -62000660 + L2a LINE L2 2747 3081 -338 1 1299 209 419 40 8 chr4 93629615 93629740 -62000380 + L2a LINE L2 3297 3425 -1 1 1299 633 204 53 8 chr4 93629775 93629908 -62000212 - B1_Mur1 SINE Alu -6 143 5 1 1299 250 284 36 108 chr4 93630102 93630185 -61999935 - PB1D7 SINE Alu -39 81 5 1 1299 313 307 174 24 chr4 93630290 93630457 -61999663 + B3A SINE B2 1 192 -6 1 1299 238 345 69 63 chr4 93630555 93631065 -61999055 - L3 LINE CR1 -1950 2539 2027 1 1299 207 373 79 24 chr4 93631550 93631715 -61998405 + MIR SINE MIR 8 181 -81 1 1299 509 302 83 0 chr4 93632138 93632307 -61997813 + MTD LTR MaLR 19 201 -220 1 1299 2562 136 36 40 chr4 93632310 93632756 -61997364 + Lx2B LINE L1 6542 6985 -15 1 1299 780 202 3 0 chr4 93632771 93633136 -61996984 + GA-rich Low_complexity Low_complexity 1 365 0 1 1299 945 121 12 6 chr4 93633171 93633337 -61996783 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 1 1299 599 254 237 5 chr4 93633352 93633538 -61996582 + MTD LTR MaLR 191 419 0 1 1299 3185 48 8 0 chr4 93635410 93635806 -61994314 - L1Md_F2 LINE L1 -11 6571 6173 1 1299 435 54 0 0 chr4 93635806 93635862 -61994258 + L1Md_F2 LINE L1 6110 6165 -417 1 1299 373 196 246 6 chr4 93635862 93635987 -61994133 - ORR1D2 LTR MaLR -221 163 1 1 1299 2048 76 47 0 chr4 93636218 93636495 -61993625 + L1_Mus2 LINE L1 6277 6566 0 1 1299 875 307 116 14 chr4 93637024 93637368 -61992752 + MTEa LTR MaLR 1 379 0 1 1299 851 65 8 0 chr4 93637535 93637658 -61992462 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 1299 487 281 74 0 chr4 93637659 93637780 -61992340 - RSINE1 SINE B4 -33 132 3 1 1299 24 77 0 0 chr4 93637905 93637957 -61992163 + AT_rich Low_complexity Low_complexity 1 52 0 1 1299 192 382 118 25 chr4 93638111 93638315 -61991805 + MIR SINE MIR 4 226 -36 1 1299 24 32 0 0 chr4 93638343 93638374 -61991746 + AT_rich Low_complexity Low_complexity 1 31 0 1 1299 21 57 0 0 chr4 93638451 93638486 -61991634 + AT_rich Low_complexity Low_complexity 1 35 0 2 1299 29 0 0 0 chr4 93638542 93638571 -61991549 + AT_rich Low_complexity Low_complexity 1 29 0 2 1299 504 0 0 0 chr4 93639052 93639108 -61991012 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1299 186 43 0 0 chr4 93639108 93639130 -61990990 + (CG)n Simple_repeat Simple_repeat 2 24 0 2 1299 573 300 66 66 chr4 93639436 93639722 -61990398 + B4A SINE B4 6 291 -1 2 1299 241 371 0 22 chr4 93640739 93640830 -61989290 + ID_B1 SINE B4 78 166 -58 2 1299 811 272 11 16 chr4 93641239 93641422 -61988698 - B3 SINE B2 0 216 35 2 1299 1795 230 51 61 chr4 93641436 93641973 -61988147 + RMER19C LTR ERVK 75 611 0 2 1299 301 242 131 40 chr4 93641973 93642015 -61988105 - B3A SINE B2 -147 51 1 2 1299 350 241 12 12 chr4 93642021 93642101 -61988019 - PB1D10 SINE Alu -7 110 31 2 1299 1118 70 0 27 chr4 93642255 93642403 -61987717 + B1_Mm SINE Alu 2 145 -2 2 1299 423 0 0 0 chr4 93642405 93642452 -61987668 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1299 706 94 0 0 chr4 93642454 93642560 -61987560 + L1_Mus2 LINE L1 6459 6564 -2 2 1299 20079 49 13 0 chr4 93643828 93646654 -61983466 - L1Md_F3 LINE L1 -420 6164 3299 2 1299 3123 37 0 8 chr4 93646655 93647041 -61983079 + L1Md_F3 LINE L1 6188 6570 -14 2 1299 234 368 0 22 chr4 93647121 93647210 -61982910 + MLT1L LTR MaLR 104 190 -420 2 1299 305 348 51 0 chr4 93647221 93647339 -61982781 - MLT1E2 LTR MaLR -1 626 503 2 1299 258 106 0 0 chr4 93647339 93647386 -61982734 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1299 3349 242 72 13 chr4 93647817 93648669 -61981451 + Lx6 LINE L1 6557 7458 -2 2 1299 761 154 96 13 chr4 93648821 93648998 -61981122 + Lx3C LINE L1 6797 7058 0 2 1299 936 246 14 9 chr4 93649071 93649284 -61980836 - B3 SINE B2 -1 215 2 2 1299 21 0 0 0 chr4 93649336 93649357 -61980763 + AT_rich Low_complexity Low_complexity 1 21 0 2 1299 252 0 0 0 chr4 93649357 93649385 -61980735 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1299 459 35 0 0 chr4 93649385 93649441 -61980679 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1299 1596 233 27 22 chr4 93649856 93650260 -61979860 - RMER20A LTR ERVK -43 473 68 2 1299 2317 259 62 2 chr4 93650260 93650790 -61979330 - Lx6 LINE L1 -131 7329 6768 2 1299 829 131 11 0 chr4 93650814 93650990 -61979130 + (TC)n Simple_repeat Simple_repeat 1 178 0 2 1299 1625 264 48 10 chr4 93650995 93651412 -61978708 - Lx6 LINE L1 -777 6683 6251 2 1299 627 265 62 39 chr4 93651628 93651836 -61978284 + B3 SINE B2 3 215 -1 2 1299 279 190 0 0 chr4 93652004 93652062 -61978058 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1299 1430 238 110 22 chr4 93652063 93652598 -61977522 + RCHARR1 DNA MER1_type 7 588 -386 2 1299 1989 169 15 88 chr4 93652598 93653052 -61977068 + MTC LTR MaLR 1 421 0 2 1299 1284 304 69 6 chr4 93653075 93653436 -61976684 + MTD LTR MaLR 18 401 -18 2 1299 6994 123 11 3 chr4 93653446 93654753 -61975367 + Lx2 LINE L1 5328 6643 -354 2 1299 1193 150 45 36 chr4 93654753 93654974 -61975146 + Lx2 LINE L1 6775 6997 0 2 1299 227 31 31 0 chr4 93655012 93655044 -61975076 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 2 1299 1489 189 58 11 chr4 93655052 93655416 -61974704 + RCHARR1 DNA MER1_type 593 973 -1 2 1299 380 284 91 65 chr4 93655867 93656037 -61974083 + MIRb SINE MIR 78 260 -8 2 1299 198 0 0 0 chr4 93657570 93657592 -61972528 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1299 249 108 0 0 chr4 93657869 93657906 -61972214 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1299 303 181 81 50 chr4 93657995 93658021 -61972099 + ORR1A3-int LTR MaLR 581 609 -1354 2 1299 768 262 132 70 chr4 93658021 93658501 -61971619 + MT2B LTR ERVL 3 544 -57 2 1299 366 202 29 96 chr4 93658469 93658573 -61971547 + RMER12 LTR ERVK 755 851 -471 2 1299 251 307 11 33 chr4 93658932 93659023 -61971097 - Zaphod DNA Tip100 0 4016 3928 2 1299 310 325 0 0 chr4 93659128 93659205 -61970915 + MER3 DNA MER1_type 9 85 -124 2 1299 452 389 56 35 chr4 93659307 93659648 -61970472 - Zaphod DNA Tip100 -3459 572 225 2 1299 2608 112 15 7 chr4 93661237 93661640 -61968480 + L1_Mus3 LINE L1 6233 6638 0 2 1299 247 278 14 0 chr4 93661683 93661755 -61968365 + MER68 LTR ERVL 146 218 -345 2 1299 639 333 69 8 chr4 93663277 93663522 -61966598 - RCHARR1 DNA MER1_type -713 261 2 2 1299 247 371 76 46 chr4 93663525 93663827 -61966293 + Lx8 LINE L1 7157 7467 -6 2 1299 1027 112 91 34 chr4 93663909 93664085 -61966035 + B2_Mm2 SINE B2 2 187 -8 2 1299 1180 91 0 18 chr4 93664088 93664255 -61965865 + B2_Mm2 SINE B2 2 165 -30 2 1299 309 271 177 57 chr4 93664321 93664462 -61965658 + RSINE1 SINE B4 8 165 0 2 1299 537 16 0 0 chr4 93664492 93664554 -61965566 + (TAGG)n Simple_repeat Simple_repeat 1 62 0 2 1299 1403 23 18 0 chr4 93664559 93664777 -61965343 + (TAGA)n Simple_repeat Simple_repeat 1 221 0 2 1299 333 0 0 0 chr4 93665162 93665199 -61964921 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1299 750 78 0 0 chr4 93666043 93666145 -61963975 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1299 980 164 0 6 chr4 93666227 93666405 -61963715 + Lx2 LINE L1 6820 6996 -1 2 1299 375 23 0 0 chr4 93668795 93668839 -61961281 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1299 407 48 48 0 chr4 93668924 93668976 -61961144 + (TTTTC)n Simple_repeat Simple_repeat 3 57 0 2 1299 234 0 0 0 chr4 93668976 93669002 -61961118 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1299 407 48 48 0 chr4 93669002 93669011 -61961109 + (TTTTC)n Simple_repeat Simple_repeat 4 12 0 2 1299 349 351 91 22 chr4 93670309 93670539 -61959581 + ORR1E LTR MaLR 9 254 -105 2 1299 277 367 64 45 chr4 93670965 93671185 -61958935 - LTR85c LTR Gypsy? -25 798 575 2 1299 871 263 21 10 chr4 93672996 93673188 -61956932 + B4 SINE B4 12 205 -87 2 1299 192 125 0 0 chr4 93673322 93673354 -61956766 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1299 207 0 0 0 chr4 93674418 93674441 -61955679 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1299 22 35 0 0 chr4 93675267 93675296 -61954824 + AT_rich Low_complexity Low_complexity 1 29 0 2 1299 233 322 92 34 chr4 93676236 93676355 -61953765 + B2_Mm1a SINE B2 1 126 -67 2 1299 452 188 0 34 chr4 93676328 93676416 -61953704 + B3 SINE B2 123 207 -9 2 1299 393 280 191 0 chr4 93676856 93677024 -61953096 + B3 SINE B2 1 200 -16 2 1299 194 159 21 64 chr4 93677415 93677462 -61952658 - L3 LINE CR1 -3055 1434 1390 2 1299 721 263 253 8 chr4 93679477 93679726 -61950394 - MTD LTR MaLR -1 418 109 2 1299 270 209 147 15 chr4 93679728 93679796 -61950324 + BC1_Mm scRNA scRNA 2 78 -74 2 1299 2179 182 67 21 chr4 93679799 93680232 -61949888 + Lx4A LINE L1 6606 7058 0 2 1299 237 287 91 18 chr4 93680392 93680502 -61949618 - MER94 DNA AcHobo -10 124 7 2 1299 26 30 0 0 chr4 93680972 93681005 -61949115 + AT_rich Low_complexity Low_complexity 1 33 0 2 1299 342 0 0 0 chr4 93681225 93681263 -61948857 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1299 251 269 118 18 chr4 93681359 93681469 -61948651 - MER5A1 DNA MER1_type -2 164 44 2 1299 197 372 110 0 chr4 93681519 93681664 -61948456 - MER5B DNA MER1_type -17 161 1 2 1299 2050 185 108 7 chr4 93681854 93682198 -61947922 + RLTR16 LTR ERVK 26 413 -92 2 1299 531 0 0 0 chr4 93682198 93682257 -61947863 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1299 2050 185 108 7 chr4 93682257 93682348 -61947772 + RLTR16 LTR ERVK 414 504 -1 2 1299 592 160 0 36 chr4 93682748 93682858 -61947262 + MTD LTR MaLR 1 106 -313 2 1299 356 309 47 18 chr4 93682841 93683005 -61947115 + MTD LTR MaLR 229 391 -28 2 1299 255 184 8 43 chr4 93683007 93683081 -61947039 + MTD LTR MaLR 299 419 0 2 1299 423 329 56 12 chr4 93683110 93683270 -61946850 - MER5A DNA MER1_type 0 189 23 2 1299 1978 140 66 14 chr4 93683516 93683864 -61946256 - Lx2 LINE L1 -1 6996 6631 2 1299 547 279 50 0 chr4 93686224 93686364 -61943756 - MTEb LTR MaLR -230 149 3 2 1299 461 298 182 42 chr4 93687873 93688087 -61942033 - MLT1F2 LTR MaLR 0 560 317 2 1299 618 284 37 0 chr4 93688176 93688338 -61941782 - MLT1F2 LTR MaLR -390 170 3 2 1299 242 294 0 56 chr4 93688955 93689027 -61941093 - MIRm SINE MIR -113 163 96 2 1299 590 273 39 0 chr4 93689145 93689273 -61940847 + RSINE1 SINE B4 3 135 -30 2 1299 512 101 11 0 chr4 93689280 93689369 -61940751 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1299 695 83 0 16 chr4 93689401 93689523 -61940597 + L1_Mus2 LINE L1 6447 6566 0 2 1299 3101 137 2 2 chr4 93689593 93690091 -61940029 - L1_Mus4 LINE L1 -870 5013 4516 2 1299 7714 112 3 1 chr4 93690091 93691729 -61938391 + L1_Mus4 LINE L1 4992 6633 -3 2 1299 1596 268 188 8 chr4 93692136 93692651 -61937469 + Lx6 LINE L1 6555 7162 -298 2 1299 422 355 59 35 chr4 93692660 93693031 -61937089 + Lx8 LINE L1 7094 7473 0 2 1299 263 167 54 50 chr4 93693019 93693128 -61936992 + L1M LINE L1 5289 5398 -893 2 1299 805 211 85 14 chr4 93693166 93693378 -61936742 - RLTR28 LTR ERVL 0 524 298 2 1299 1006 96 0 0 chr4 93693369 93693504 -61936616 + B1_Mus1 SINE Alu 14 148 0 2 1299 1656 194 10 0 chr4 93693530 93693829 -61936291 - RLTR28 LTR ERVL -222 302 1 2 1299 295 312 101 31 chr4 93693829 93693915 -61936205 - B3A SINE B2 -102 96 2 2 1299 270 0 0 0 chr4 93694428 93694458 -61935662 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1299 372 22 0 0 chr4 93695114 93695159 -61934961 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1299 311 0 0 25 chr4 93696074 93696114 -61934006 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1299 246 167 0 0 chr4 93696193 93696253 -61933867 + A-rich Low_complexity Low_complexity 1 60 0 2 1299 2595 231 42 27 chr4 93696588 93697225 -61932895 + RMER1C Other Other 689 1335 -7 2 1299 652 254 135 13 chr4 93697378 93697689 -61932431 + Lx7 LINE L1 5821 6169 -1527 2 1299 486 0 0 0 chr4 93697689 93697743 -61932377 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1299 2759 243 95 4 chr4 93697748 93698435 -61931685 + Lx7 LINE L1 6209 6957 -739 2 1299 328 257 80 58 chr4 93698436 93698643 -61931477 + Lx7 LINE L1 7559 7696 0 2 1299 345 100 0 0 chr4 93700661 93700721 -61929399 - Lx2B LINE L1 0 7000 6941 3 1299 5318 172 45 36 chr4 93700732 93701940 -61928180 - Lx2B LINE L1 -238 6820 5639 3 1299 424 267 112 15 chr4 93701934 93702193 -61927927 - L1MD LINE L1 -1706 4440 4157 3 1299 33 56 0 0 chr4 93702394 93702448 -61927672 + AT_rich Low_complexity Low_complexity 1 54 0 3 1299 351 314 9 28 chr4 93702735 93702843 -61927277 + PB1D7 SINE Alu 13 118 -2 3 1299 3858 71 0 39 chr4 93703241 93703786 -61926334 - Lx3_Mus LINE L1 -232 5654 5131 3 1299 9116 81 43 6 chr4 93703784 93703990 -61926130 + Lx3_Mus LINE L1 5676 5907 -1102 3 1299 369 58 0 0 chr4 93703990 93704042 -61926078 + (TTAAA)n Simple_repeat Simple_repeat 4 55 0 3 1299 9116 81 43 6 chr4 93704042 93705121 -61924999 + Lx3_Mus LINE L1 5908 7009 0 3 1299 252 59 0 0 chr4 93705575 93705609 -61924511 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1299 543 53 0 0 chr4 93705704 93705779 -61924341 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 3 1299 240 286 142 9 chr4 93706026 93706139 -61923981 - MIRc SINE MIR -29 239 112 3 1299 220 419 31 57 chr4 93706177 93706405 -61923715 - MIRb SINE MIR 0 268 47 3 1299 444 198 35 0 chr4 93706895 93706981 -61923139 + MLT1A LTR MaLR 28 116 -258 3 1299 520 76 0 0 chr4 93707357 93707436 -61922684 - L1_Mus3 LINE L1 -4 6634 6556 3 1299 354 45 0 0 chr4 93707609 93707653 -61922467 + (ATG)n Simple_repeat Simple_repeat 2 45 0 3 1299 25 31 0 0 chr4 93707774 93707806 -61922314 + AT_rich Low_complexity Low_complexity 1 32 0 3 1299 1032 96 7 0 chr4 93710307 93710453 -61919667 + URR1A DNA MER1_type 79 225 -1 3 1299 522 0 0 0 chr4 93710978 93711036 -61919084 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 3 1299 960 111 0 0 chr4 93711036 93711179 -61918941 + (GGAGA)n Simple_repeat Simple_repeat 3 146 0 3 1299 232 222 0 0 chr4 93711334 93711379 -61918741 + GA-rich Low_complexity Low_complexity 2 46 0 3 1299 1555 67 19 0 chr4 93711722 93711932 -61918188 + L1_Mus2 LINE L1 6351 6564 -2 3 1299 779 335 29 0 chr4 93712343 93712621 -61917499 - Lx7 LINE L1 -1169 6527 6242 3 1299 3661 95 50 33 chr4 93714012 93714612 -61915508 + Lx2 LINE L1 6378 6987 -10 3 1299 531 345 46 27 chr4 93714713 93715074 -61915046 - MLT2B4 LTR ERVL -36 520 103 3 1299 339 245 0 0 chr4 93715436 93715530 -61914590 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 1299 306 323 128 5 chr4 93715714 93715932 -61914188 + L1M5 LINE L1 2426 2670 -3476 3 162 4734 216 32 18 chr4 93716330 93717354 -61912766 - Lx5 LINE L1 0 7050 6012 3 1300 21 36 0 0 chr4 93717384 93717412 -61912708 + AT_rich Low_complexity Low_complexity 1 28 0 3 1300 1127 207 63 15 chr4 93717536 93717806 -61912314 - Lx4B LINE L1 -3 7055 6773 3 1300 3822 101 86 6 chr4 93717809 93718435 -61911685 + L1_Mur2 LINE L1 3723 4398 -1479 3 1300 278 329 244 43 chr4 93718435 93718784 -61911336 + MLT1G1 LTR MaLR 129 547 -32 3 1300 207 337 22 22 chr4 93719960 93720051 -61910069 - MIR SINE MIR -68 140 50 3 1300 272 219 83 50 chr4 93720151 93720271 -61909849 - Lx9 LINE L1 -40 7604 7481 3 1300 446 219 18 0 chr4 93720271 93720385 -61909735 + (TATG)n Simple_repeat Simple_repeat 2 117 0 3 1300 699 307 81 58 chr4 93720437 93721008 -61909112 - Lx9 LINE L1 -235 7409 6826 3 1300 1328 303 77 18 chr4 93721095 93721592 -61908528 + Lx9 LINE L1 6301 6826 -818 3 1300 405 301 96 87 chr4 93721909 93722138 -61907982 - ORR1E LTR MaLR -105 254 24 3 1300 3713 121 19 25 chr4 93723429 93724023 -61906097 + Lx4A LINE L1 6461 7050 -8 3 1300 186 43 0 0 chr4 93724026 93724049 -61906071 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 3 1300 253 184 103 26 chr4 93724278 93724356 -61905764 + ORR1D1 LTR MaLR 32 115 -259 3 1300 529 285 148 11 chr4 93724940 93725203 -61904917 - Lx8 LINE L1 -11 7462 7164 3 1300 315 0 0 0 chr4 93725451 93725486 -61904634 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1300 414 0 0 0 chr4 93725486 93725531 -61904589 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1300 212 0 36 0 chr4 93725738 93725766 -61904354 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1300 252 0 0 0 chr4 93726200 93726228 -61903892 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 1300 1063 89 0 33 chr4 93726241 93726392 -61903728 + B1_Mus1 SINE Alu 2 147 -1 3 1300 888 267 0 16 chr4 93726588 93726782 -61903338 - B3 SINE B2 0 216 26 3 1300 2035 106 54 3 chr4 93727096 93727390 -61902730 - RLTR27 LTR ERVK 0 309 1 3 1300 1392 146 0 58 chr4 93727390 93727667 -61902453 - MMERVK10C-int LTR ERVK 0 7581 7321 3 1300 285 319 18 24 chr4 93727801 93727965 -61902155 - MMERVK10C-int LTR ERVK -512 7069 6907 3 1300 5698 309 35 42 chr4 93728456 93732454 -61897666 - MMERVK10C-int LTR ERVK -2103 5478 1505 3 1300 233 268 0 53 chr4 93733114 93733189 -61896931 + T-rich Low_complexity Low_complexity 5 75 0 3 1300 682 228 46 41 chr4 93733190 93733387 -61896733 - MMERVK10C-int LTR ERVK -1135 852 655 3 1300 350 68 6 8 chr4 93733419 93733473 -61896647 - MMERVK10C-int LTR ERVK -7314 267 162 3 1300 2094 107 37 3 chr4 93733497 93733796 -61896324 - RLTR27 LTR ERVK 0 309 1 3 1300 331 274 51 0 chr4 93734408 93734525 -61895595 - L1MC1 LINE L1 -20 6313 6191 3 1300 459 0 0 0 chr4 93734599 93734650 -61895470 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1300 1051 291 71 61 chr4 93734659 93735042 -61895078 - L1MC1 LINE L1 -276 6057 5677 3 1300 1125 63 0 0 chr4 93735042 93735185 -61894935 - B1_Mus2 SINE Alu -4 143 1 3 1300 1051 283 98 39 chr4 93735185 93735887 -61894233 - L1MC1 LINE L1 -657 5676 4933 3 1300 241 316 25 50 chr4 93735901 93736021 -61894099 - MER21B LTR ERV1 -419 444 328 3 1300 278 268 78 35 chr4 93736040 93736062 -61894058 - ID_B1 SINE B4 -29 195 111 3 1300 329 224 58 23 chr4 93736062 93736149 -61893971 - PB1D10 SINE Alu -27 90 1 3 1300 417 325 30 67 chr4 93736152 93736170 -61893950 - RSINE1 SINE B4 0 165 150 3 1300 486 0 0 0 chr4 93736170 93736224 -61893896 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1300 417 325 30 67 chr4 93736224 93736370 -61893750 - RSINE1 SINE B4 -16 149 7 3 1300 821 285 42 14 chr4 93736341 93736590 -61893530 - B4 SINE B4 -43 249 1 3 1300 614 278 134 36 chr4 93737240 93737464 -61892656 + B4A SINE B4 43 288 -4 3 1300 1947 138 16 0 chr4 93738675 93738979 -61891141 + Lx2 LINE L1 6689 6997 0 3 1300 431 226 49 0 chr4 93740650 93740747 -61889373 - B1F SINE Alu -18 102 1 3 1300 371 280 86 19 chr4 93740834 93741047 -61889073 + L1MB7 LINE L1 5587 5799 -385 3 1300 495 278 59 44 chr4 93741047 93741250 -61888870 + B3 SINE B2 1 206 -10 3 1300 371 310 82 55 chr4 93741250 93741435 -61888685 + L1MB7 LINE L1 5800 6006 -178 3 1300 22 56 0 0 chr4 93741552 93741588 -61888532 + AT_rich Low_complexity Low_complexity 1 36 0 3 1300 206 335 60 14 chr4 93742834 93742846 -61887274 - L2a LINE L2 -9 3417 3398 3 1300 204 268 0 0 chr4 93742846 93742887 -61887233 - MIRb SINE MIR -17 251 211 3 1300 206 335 60 14 chr4 93742887 93742989 -61887131 - L2a LINE L2 -9 3397 3214 3 1300 192 163 139 0 chr4 93744391 93744434 -61885686 + L2 LINE L2 3030 3078 -341 3 1300 21 57 0 0 chr4 93744743 93744778 -61885342 + AT_rich Low_complexity Low_complexity 1 35 0 3 1300 637 294 206 0 chr4 93745650 93745960 -61884160 + MTEa LTR MaLR 5 378 -1 3 1300 567 0 0 0 chr4 93746231 93746294 -61883826 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 1300 758 264 193 38 chr4 93746298 93746630 -61883490 + MTD LTR MaLR 13 419 0 3 1300 778 281 66 44 chr4 93747021 93747492 -61882628 - MTD LTR MaLR -15 404 1 3 1300 25 31 0 0 chr4 93747549 93747581 -61882539 + AT_rich Low_complexity Low_complexity 1 32 0 3 1300 252 151 26 40 chr4 93750976 93751052 -61879068 + T-rich Low_complexity Low_complexity 3 77 0 3 1300 378 0 0 0 chr4 93751054 93751096 -61879024 + (CTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1300 304 338 117 37 chr4 93751115 93751278 -61878842 - B3A SINE B2 -22 176 1 3 1300 582 286 0 35 chr4 93751292 93751437 -61878683 - ID_B1 SINE B4 -9 215 76 3 1300 512 302 157 26 chr4 93751921 93752189 -61877931 - RMER15 LTR ERVL 0 575 273 3 1300 253 276 241 0 chr4 93754366 93754453 -61875667 + PB1D10 SINE Alu 3 110 -7 3 1300 749 67 10 0 chr4 93754453 93754557 -61875563 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 3 1300 340 311 73 0 chr4 93754566 93754730 -61875390 + L1M2 LINE L1 2193 2368 -3775 3 1300 201 74 0 0 chr4 93754751 93754778 -61875342 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1300 1988 212 8 3 chr4 93754790 93755164 -61874956 - RLTR14 LTR ERV1 0 382 7 3 1300 508 312 106 31 chr4 93755409 93755664 -61874456 + MLT1A0 LTR MaLR 87 360 -5 3 1300 2070 228 26 39 chr4 93755676 93756242 -61873878 + Lx7 LINE L1 6636 7194 -502 3 1300 1816 51 0 0 chr4 93756249 93756483 -61873637 - RLTR10-int LTR ERVK -753 1234 1001 3 1300 807 248 251 19 chr4 93756483 93756746 -61873374 - MTD LTR MaLR -90 329 6 3 1300 404 258 85 99 chr4 93758652 93759005 -61871115 - L1ME1 LINE L1 -134 6045 5698 3 1300 190 135 26 51 chr4 93759741 93759780 -61870340 + L2a LINE L2 3350 3387 -39 3 1300 21 36 0 0 chr4 93760862 93760890 -61869230 + AT_rich Low_complexity Low_complexity 1 28 0 3 1300 1277 62 79 0 chr4 93761626 93761804 -61868316 - L1_Mus1 LINE L1 0 6567 6376 3 1300 244 45 21 43 chr4 93761971 93762018 -61868102 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 3 1300 664 245 179 105 chr4 93762467 93762769 -61867351 + RLTR31_Mur LTR ERVK 1 316 -237 3 1300 243 0 0 0 chr4 93762769 93762796 -61867324 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1300 664 245 179 105 chr4 93762796 93763008 -61867112 + RLTR31_Mur LTR ERVK 317 553 0 3 1300 354 45 0 0 chr4 93763652 93763696 -61866424 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1300 276 285 92 65 chr4 93763925 93763955 -61866165 + L1MEg LINE L1 1168 1198 -4886 3 1300 2892 113 82 2 chr4 93763955 93764416 -61865704 + Lx2 LINE L1 6500 6997 0 3 1300 276 285 92 65 chr4 93764416 93764723 -61865397 + L1MEg LINE L1 1199 1514 -4570 3 1300 267 269 0 43 chr4 93764723 93764793 -61865327 + B4A SINE B4 220 286 -6 3 1300 640 200 7 7 chr4 93765108 93765249 -61864871 + Lx9 LINE L1 6859 6999 -645 3 1300 231 188 0 0 chr4 93765476 93765524 -61864596 - MT2A LTR ERVL 0 533 486 3 1300 480 171 210 34 chr4 93765530 93765620 -61864500 + Lx9 LINE L1 7435 7557 -87 3 1300 2352 15 0 0 chr4 93765620 93765886 -61864234 + L1Md_A LINE L1 6317 6582 0 3 1300 480 171 210 34 chr4 93765886 93765971 -61864149 + Lx9 LINE L1 7558 7641 -3 3 1300 2397 192 48 0 chr4 93765987 93766425 -61863695 - MT2A LTR ERVL -74 459 1 4 1300 603 313 59 65 chr4 93766495 93766801 -61863319 + MTE2a LTR MaLR 19 341 -78 4 1300 3620 149 26 15 chr4 93766801 93767471 -61862649 - RMER6A LTR ERVK 0 756 1 4 1300 260 388 85 15 chr4 93767650 93767909 -61862211 - L3 LINE CR1 -495 3994 3718 4 1300 825 295 0 16 chr4 93768869 93769062 -61861058 - B3 SINE B2 -26 190 1 4 1300 320 327 159 43 chr4 93769456 93769782 -61860338 - L3 LINE CR1 -62 4427 4064 4 1300 916 252 61 0 chr4 93770165 93770363 -61859757 - B3 SINE B2 -6 210 1 4 1300 549 0 0 0 chr4 93771504 93771565 -61858555 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1300 315 0 0 0 chr4 93771565 93771599 -61858521 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1300 290 224 64 73 chr4 93771736 93771885 -61858235 - ID2 SINE ID 0 152 3 4 1300 22 35 0 0 chr4 93771889 93771918 -61858202 + AT_rich Low_complexity Low_complexity 1 29 0 4 1300 21 0 0 0 chr4 93772515 93772536 -61857584 + AT_rich Low_complexity Low_complexity 1 21 0 4 1300 401 276 54 90 chr4 93772579 93772969 -61857151 - L1MA6 LINE L1 -51 6249 5874 4 1300 1578 124 16 0 chr4 93774223 93774465 -61855655 - Lx2B LINE L1 -139 6861 6616 4 1300 2586 148 59 35 chr4 93774465 93774956 -61855164 + Lx2 LINE L1 6101 6603 -394 4 1300 1549 161 73 29 chr4 93774956 93775279 -61854841 - ORR1A2 LTR MaLR -41 329 1 4 1300 1356 83 16 5 chr4 93776703 93776896 -61853224 - B2_Mm2 SINE B2 0 195 1 4 1300 465 408 56 53 chr4 93776923 93777355 -61852765 - MER115 DNA Tip100 -125 568 136 4 1300 387 0 0 0 chr4 93777506 93777549 -61852571 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1300 424 307 9 0 chr4 93778106 93778220 -61851900 - MER94 DNA AcHobo -6 128 14 4 1300 182 239 26 66 chr4 93778262 93778338 -61851782 + L2c LINE L2 3260 3332 -55 4 1300 486 227 0 0 chr4 93779012 93779144 -61850976 + CT-rich Low_complexity Low_complexity 2 133 0 4 1300 191 0 0 94 chr4 93779298 93779330 -61850790 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1300 324 127 53 66 chr4 93779330 93779406 -61850714 + MTEa LTR MaLR 305 379 0 4 1300 440 276 19 28 chr4 93780217 93780362 -61849758 - MTEa LTR MaLR -9 370 214 4 1300 407 302 0 16 chr4 93780394 93780522 -61849598 - MTEa LTR MaLR -226 133 8 4 1300 600 14 0 0 chr4 93780817 93780886 -61849234 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1300 197 419 12 30 chr4 93781388 93781553 -61848567 + MIR SINE MIR 1 162 -100 4 1300 233 261 106 21 chr4 93782013 93782107 -61848013 + RMER12 LTR ERVK 750 851 -471 4 1300 221 167 0 0 chr4 93783108 93783150 -61846970 + A-rich Low_complexity Low_complexity 1 42 0 4 1300 730 247 34 6 chr4 93783241 93783420 -61846700 + B3A SINE B2 6 189 -9 4 1300 205 312 172 30 chr4 93783834 93784032 -61846088 - L3 LINE CR1 -351 4138 3913 4 1300 3247 78 11 0 chr4 93784317 93784750 -61845370 + Lx3_Mus LINE L1 6572 7009 0 4 1300 665 300 27 41 chr4 93786077 93786296 -61843824 + B3 SINE B2 1 216 0 4 1300 1010 86 7 0 chr4 93788398 93788538 -61841582 + B1_Mus2 SINE Alu 1 141 -6 4 1300 234 0 0 0 chr4 93788694 93788720 -61841400 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 4 1300 27 73 0 0 chr4 93789067 93789122 -61840998 + AT_rich Low_complexity Low_complexity 1 55 0 4 1300 361 288 18 59 chr4 93789317 93789487 -61840633 - RSINE1 SINE B4 0 165 3 4 1300 817 154 7 14 chr4 93789602 93789747 -61840373 - B1_Mm SINE Alu -3 144 1 4 1300 432 229 172 0 chr4 93790610 93790732 -61839388 - MER2 DNA MER2_type -121 224 82 4 1300 2071 117 9 0 chr4 93790987 93791304 -61838816 + RLTR46 LTR ERVK 1 320 0 4 1300 951 268 66 59 chr4 93791417 93791706 -61838414 + B4A SINE B4 2 292 0 4 1300 45 90 0 0 chr4 93791706 93791828 -61838292 + AT_rich Low_complexity Low_complexity 1 122 0 4 1300 349 228 66 47 chr4 93792037 93792143 -61837977 - PB1D7 SINE Alu -4 116 9 4 1300 589 250 18 68 chr4 93792179 93792342 -61837778 + RSINE1 SINE B4 9 163 -2 4 1300 211 310 138 32 chr4 93792571 93792730 -61837390 + MIR SINE MIR 41 223 -45 4 1300 511 297 17 102 chr4 93793059 93793194 -61836926 + RSINE1 SINE B4 3 129 -36 4 1300 369 43 0 0 chr4 93793194 93793241 -61836879 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1300 511 297 17 102 chr4 93793241 93793281 -61836839 + RSINE1 SINE B4 130 163 -2 4 1300 219 36 0 0 chr4 93793714 93793742 -61836378 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1300 364 299 109 67 chr4 93794040 93794205 -61835915 + MTEa LTR MaLR 203 374 -5 4 1300 188 388 0 0 chr4 93795137 93795186 -61834934 + L2b LINE L2 3298 3346 -29 4 1300 378 308 143 37 chr4 93795212 93795401 -61834719 - MIR SINE MIR -34 228 20 4 1300 2573 222 72 67 chr4 93796049 93796405 -61833715 - Lx7 LINE L1 0 7696 7348 4 1300 1211 89 6 0 chr4 93796405 93796584 -61833536 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1300 2573 222 72 67 chr4 93796584 93796991 -61833129 - Lx7 LINE L1 -349 7347 6930 4 1300 6059 153 122 6 chr4 93796970 93798185 -61831935 - L1_Mur3 LINE L1 -1180 4700 3345 4 1300 1743 226 79 45 chr4 93798197 93798702 -61831418 - RLTR11A LTR ERVK -6 522 1 4 1300 3290 169 137 8 chr4 93798702 93798905 -61831215 - L1_Mur3 LINE L1 -2531 3349 3129 4 1300 327 25 0 0 chr4 93798905 93798945 -61831175 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 1300 3290 169 137 8 chr4 93798945 93799062 -61831058 - L1_Mur3 LINE L1 -2752 3128 3011 4 1300 660 83 0 0 chr4 93799062 93799158 -61830962 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 4 1300 3290 169 137 8 chr4 93799158 93799619 -61830501 - L1_Mur3 LINE L1 -2870 3010 2469 4 1300 4169 161 60 54 chr4 93799640 93801383 -61828737 - L1_Mur3 LINE L1 -3830 2050 294 4 1300 29 47 0 0 chr4 93801706 93801749 -61828371 + AT_rich Low_complexity Low_complexity 1 43 0 4 1300 243 0 0 0 chr4 93801971 93801998 -61828122 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1300 387 278 95 26 chr4 93802578 93802911 -61827209 + L1MEf LINE L1 2055 2400 -4000 4 1300 4588 99 6 0 chr4 93802904 93803550 -61826570 - L1_Mus1 LINE L1 -6 5877 5228 4 1300 5579 67 6 0 chr4 93803550 93804262 -61825858 + L1_Mus1 LINE L1 5850 6565 -2 4 1300 874 255 119 22 chr4 93804337 93804787 -61825333 + L1M2 LINE L1 5299 5783 -508 4 1300 267 190 0 0 chr4 93805122 93805180 -61824940 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1300 219 349 79 8 chr4 93805772 93805899 -61824221 + MIRc SINE MIR 14 149 -119 4 1300 5041 149 76 9 chr4 93805922 93806820 -61823300 + RMER17B LTR ERVK 1 958 0 4 1300 302 319 156 0 chr4 93807018 93807153 -61822967 + MIR SINE MIR 90 245 -17 4 1300 733 306 106 24 chr4 93807456 93808141 -61821979 - L1_Rod LINE L1 -3022 2858 2126 4 1300 197 304 88 12 chr4 93809488 93809568 -61820552 + L2c LINE L2 3285 3370 -17 4 1300 366 328 33 16 chr4 93809858 93809979 -61820141 - MER94 DNA AcHobo -11 123 1 4 1300 267 346 45 8 chr4 93809981 93810115 -61820005 - MIR SINE MIR -74 188 50 4 1300 357 337 62 39 chr4 93811059 93811238 -61818882 - MER5A DNA MER1_type -6 183 1 4 1300 201 250 33 0 chr4 93811799 93811859 -61818261 + CT-rich Low_complexity Low_complexity 4 65 0 4 1300 254 226 242 4 chr4 93813918 93814028 -61816092 + MIR SINE MIR 80 234 -34 4 1300 417 362 91 74 chr4 93814438 93814832 -61815288 - MLT1I LTR MaLR -10 401 1 4 1300 320 250 0 0 chr4 93815389 93815453 -61814667 - MIR SINE MIR -72 136 73 4 1300 183 292 54 43 chr4 93816327 93816420 -61813700 + MIRb SINE MIR 120 213 -55 4 1300 23 0 0 0 chr4 93816569 93816592 -61813528 + AT_rich Low_complexity Low_complexity 1 23 0 4 1300 2726 128 2 2 chr4 93817279 93817709 -61812411 + L1_Mus4 LINE L1 6207 6636 0 4 1300 3062 86 2 2 chr4 93818408 93818815 -61811305 + MTB_Mm LTR MaLR 1 407 0 4 1300 1759 153 44 6 chr4 93818911 93819226 -61810894 + RLTR15 LTR ERVK 1 327 -32 4 1300 501 241 23 0 chr4 93819464 93819597 -61810523 - L1M2 LINE L1 -759 5541 5406 4 1300 1794 289 132 27 chr4 93819631 93820653 -61809467 - L1MC3 LINE L1 -2 7783 6655 4 1300 545 283 163 16 chr4 93820654 93820905 -61809215 - MLT1A LTR MaLR 0 374 87 4 1300 1181 296 83 24 chr4 93820941 93821522 -61808598 - L1MC3 LINE L1 -1131 6654 6040 4 1300 679 286 48 0 chr4 93823343 93823549 -61806571 + B3 SINE B2 1 216 0 4 1300 3399 89 28 0 chr4 93824663 93825123 -61804997 - L1_Mus1 LINE L1 -4 6563 6091 4 1300 3729 68 36 0 chr4 93825123 93825624 -61804496 + L1_Mus1 LINE L1 5623 6141 -426 4 1300 21 0 0 0 chr4 93826223 93826244 -61803876 + AT_rich Low_complexity Low_complexity 1 21 0 4 1300 477 0 0 0 chr4 93827095 93827148 -61802972 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1300 556 227 37 30 chr4 93827839 93828100 -61802020 - RMER10A LTR ERVL -6 436 106 4 1300 1675 167 3 11 chr4 93828081 93828366 -61801754 - RLTR10E LTR ERVK -28 283 1 4 1300 856 196 0 0 chr4 93828396 93828539 -61801581 - RMER10A LTR ERVL -299 143 1 4 1300 584 319 35 59 chr4 93828754 93829028 -61801092 + B4A SINE B4 1 269 -23 4 1300 441 36 0 0 chr4 93829028 93829083 -61801037 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1300 584 319 35 59 chr4 93829083 93829095 -61801025 + B4A SINE B4 270 280 -12 4 1300 234 275 0 0 chr4 93830299 93830379 -61799741 + CT-rich Low_complexity Low_complexity 2 81 0 4 1300 302 373 41 6 chr4 93830879 93831049 -61799071 + L1MEd LINE L1 440 615 -5504 4 1300 405 0 0 0 chr4 93831328 93831373 -61798747 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1300 417 86 0 0 chr4 93831373 93831430 -61798690 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1300 1642 178 52 12 chr4 93831827 93832157 -61797963 - RMER1A Other Other -14 1016 674 4 1300 201 204 0 20 chr4 93832327 93832358 -61797762 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4 1300 477 0 0 0 chr4 93832358 93832411 -61797709 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1300 201 204 0 20 chr4 93832411 93832429 -61797691 + (TATG)n Simple_repeat Simple_repeat 4 21 0 4 1300 218 321 84 45 chr4 93833240 93833442 -61796678 - L2a LINE L2 -9 3417 3208 4 1300 243 290 0 0 chr4 93834262 93834324 -61795796 + GA-rich Low_complexity Low_complexity 6 67 0 5 1300 7052 12 0 0 chr4 93834328 93835165 -61794955 + L1Md_T LINE L1 4749 5585 -298 5 1300 8415 30 8 0 chr4 93835166 93836154 -61793966 + L1Md_T LINE L1 5587 6582 0 5 1300 706 296 62 18 chr4 93836194 93836418 -61793702 - MLT2C2 LTR ERVL -103 361 128 5 1300 317 313 0 29 chr4 93836459 93836551 -61793569 - ID4 SINE ID -64 88 6 5 1300 242 317 91 8 chr4 93836921 93837042 -61793078 - LTR65 LTR ERV1 -64 605 475 5 1300 905 108 0 6 chr4 93837550 93837718 -61792402 + (GA)n Simple_repeat Simple_repeat 2 168 0 5 1300 274 335 125 36 chr4 93838413 93838605 -61791515 + MIRc SINE MIR 3 211 -57 5 1300 2065 50 0 0 chr4 93839059 93839321 -61790799 + L1_Mm LINE L1 5512 5773 -110 5 1300 584 331 36 25 chr4 93839635 93839911 -61790209 + L3 LINE CR1 3128 3406 -1083 5 1300 1003 130 0 14 chr4 93840119 93840267 -61789853 - B1_Mus1 SINE Alu -1 147 2 5 1300 288 0 0 0 chr4 93840391 93840423 -61789697 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1300 839 188 25 20 chr4 93840424 93840625 -61789495 + Lx7 LINE L1 7495 7696 0 5 1300 327 321 13 101 chr4 93840867 93841016 -61789104 - RSINE1 SINE B4 -28 137 2 5 1300 273 29 0 0 chr4 93841823 93841857 -61788263 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1300 526 39 26 0 chr4 93841857 93841933 -61788187 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1300 822 212 0 0 chr4 93842037 93842174 -61787946 - B1_Mur1 SINE Alu -11 138 2 5 1300 237 65 0 0 chr4 93842182 93842213 -61787907 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 5 1300 507 338 24 70 chr4 93842226 93842439 -61787681 - B4A SINE B4 -88 204 2 5 1300 22 70 0 0 chr4 93842558 93842601 -61787519 + AT_rich Low_complexity Low_complexity 1 43 0 5 1300 1039 300 14 29 chr4 93842731 93843012 -61787108 + B4A SINE B4 2 278 -14 5 1300 211 267 0 0 chr4 93843318 93843363 -61786757 + CT-rich Low_complexity Low_complexity 3 47 0 5 1300 892 229 17 6 chr4 93843495 93843675 -61786445 - MER5A DNA MER1_type 0 189 8 5 1300 247 364 44 93 chr4 93843679 93843927 -61786193 + L2b LINE L2 3134 3369 -6 5 1300 268 385 68 52 chr4 93844071 93844323 -61785797 + B4A SINE B4 36 291 -1 5 1300 1108 78 0 0 chr4 93844346 93844488 -61785632 + B1_Mm SINE Alu 1 142 -5 5 1300 21 57 0 0 chr4 93845637 93845672 -61784448 + AT_rich Low_complexity Low_complexity 1 35 0 5 1300 350 335 55 50 chr4 93846549 93846731 -61783389 + MTEa LTR MaLR 1 183 -196 5 1300 493 318 87 0 chr4 93847300 93847473 -61782647 + B3A SINE B2 1 188 -10 5 1301 195 290 58 0 chr4 93849382 93849451 -61780669 - MIRb SINE MIR -58 210 138 5 1301 471 272 44 0 chr4 93849581 93849695 -61780425 - PB1D7 SINE Alu 0 120 2 5 1301 334 287 241 0 chr4 93851177 93851372 -61778748 + MIR SINE MIR 19 260 -2 5 1301 314 102 34 0 chr4 93852212 93852271 -61777849 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 5 1301 226 253 55 44 chr4 93852361 93852452 -61777668 - ID_B1 SINE B4 -31 193 102 5 1301 306 0 0 0 chr4 93852892 93852926 -61777194 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 5 1301 2687 71 0 0 chr4 93853016 93853366 -61776754 + L1Md_T LINE L1 6233 6582 0 5 1301 1095 50 0 14 chr4 93854256 93854267 -61775853 - B1_Mm SINE Alu 0 147 138 5 1301 354 23 0 0 chr4 93854267 93854310 -61775810 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 5 1301 1095 50 0 14 chr4 93854310 93854441 -61775679 - B1_Mm SINE Alu -10 137 7 5 1301 643 213 81 0 chr4 93854586 93854722 -61775398 - B1_Mur2 SINE Alu -1 148 2 5 1301 997 236 19 0 chr4 93855092 93855308 -61774812 - ID_B1 SINE B4 -3 221 2 5 1301 26 0 0 0 chr4 93855973 93855999 -61774121 + AT_rich Low_complexity Low_complexity 1 26 0 5 1301 2548 76 0 66 chr4 93856837 93857217 -61772903 + L1_Mus2 LINE L1 6212 6566 0 5 1301 1134 76 7 0 chr4 93857227 93857372 -61772748 + B1_Mus2 SINE Alu 2 147 0 5 1301 573 241 13 40 chr4 93858795 93858946 -61771174 + B1F SINE Alu 1 147 -2 5 1301 584 363 14 14 chr4 93860663 93860940 -61769180 - B4 SINE B4 -13 279 3 5 1301 286 303 9 9 chr4 93861472 93861582 -61768538 + PB1 SINE Alu 18 127 0 5 1301 251 311 136 57 chr4 93861771 93861948 -61768172 - MLT1J LTR MaLR -161 351 161 5 1301 792 287 122 11 chr4 93862609 93863078 -61767042 + L1MA8 LINE L1 4760 5280 -863 5 1301 442 222 33 0 chr4 93863101 93863191 -61766929 + B3A SINE B2 8 100 -98 5 1301 35850 30 5 0 chr4 93863195 93869771 -61760349 - L1Md_T LINE L1 0 6585 1 5 1301 545 321 13 19 chr4 93869771 93869930 -61760190 + B3 SINE B2 54 211 -5 5 1301 800 117 0 0 chr4 93869959 93870070 -61760050 + B1_Mus1 SINE Alu 1 111 -37 5 1301 457 264 219 15 chr4 93870080 93870306 -61759814 + L1MA8 LINE L1 5508 5788 -383 5 1301 419 35 18 0 chr4 93870306 93870363 -61759757 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1301 826 278 116 18 chr4 93870363 93870805 -61759315 + L1MA8 LINE L1 5789 6270 -21 5 1301 483 314 66 42 chr4 93872623 93872836 -61757284 - L2 LINE L2 -924 2495 2278 5 1301 337 348 66 0 chr4 93872934 93873115 -61757005 - MER113A DNA MER1_type -120 194 2 5 1301 919 246 25 0 chr4 93873498 93873701 -61756419 - B3 SINE B2 -7 209 2 5 1301 2766 9 6 0 chr4 93873701 93874034 -61756086 + L1Md_T LINE L1 5252 5586 -297 5 1301 8931 8 0 2 chr4 93874034 93875032 -61755088 + L1Md_T LINE L1 5587 6582 0 5 1301 1184 68 0 0 chr4 93877740 93877887 -61752233 + B1_Mus1 SINE Alu 2 148 0 5 1301 216 0 0 0 chr4 93878598 93878622 -61751498 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1301 189 320 107 29 chr4 93878659 93878762 -61751358 - L2b LINE L2 -40 3335 3225 5 1301 307 331 181 46 chr4 93879029 93879148 -61750972 + L1MC4a LINE L1 6467 6602 -1280 5 1301 342 0 0 0 chr4 93879148 93879186 -61750934 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1301 307 331 181 46 chr4 93879186 93879326 -61750794 + L1MC4a LINE L1 6603 6760 -1122 5 1301 504 59 0 0 chr4 93879953 93880021 -61750099 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1301 585 72 0 0 chr4 93880021 93880103 -61750017 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1301 22 35 0 0 chr4 93880161 93880190 -61749930 + AT_rich Low_complexity Low_complexity 1 29 0 5 1301 577 251 103 74 chr4 93880567 93880946 -61749174 + MLT1B LTR MaLR 1 390 0 5 1301 255 194 0 0 chr4 93881043 93881136 -61748984 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 5 1301 287 301 116 20 chr4 93881600 93881746 -61748374 - MTE2a LTR MaLR -125 254 95 5 1301 198 0 0 0 chr4 93882318 93882340 -61747780 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 5 1301 460 289 18 70 chr4 93882605 93882776 -61747344 + RSINE1 SINE B4 4 165 0 5 1301 306 0 0 0 chr4 93882805 93882839 -61747281 + (CATA)n Simple_repeat Simple_repeat 4 37 0 5 1301 330 304 14 0 chr4 93883141 93883210 -61746910 + MER45R DNA Tip100 21 90 -1491 5 1301 1287 218 61 37 chr4 93883254 93883907 -61746213 - L1M2 LINE L1 -550 5741 5066 5 1301 539 257 68 30 chr4 93883947 93884212 -61745908 + L1MB5 LINE L1 5870 6144 -30 5 1301 22 0 0 0 chr4 93884242 93884264 -61745856 + AT_rich Low_complexity Low_complexity 1 22 0 5 1301 972 295 65 7 chr4 93884566 93884982 -61745138 + L1MA10 LINE L1 5880 6319 -15 5 1301 1642 276 87 12 chr4 93885211 93886100 -61744020 + L1MA5 LINE L1 4520 5480 -820 5 1301 508 303 47 47 chr4 93886113 93886262 -61743858 + RSINE1 SINE B4 17 165 0 5 1301 291 200 117 29 chr4 93886307 93886410 -61743710 + L1MA5 LINE L1 5487 5598 -699 5 1301 887 290 59 9 chr4 93886413 93886733 -61743387 - Lx9 LINE L1 -319 7325 6990 5 1301 664 252 87 14 chr4 93886742 93887028 -61743092 + Lx9 LINE L1 7317 7623 -21 5 1301 405 344 46 16 chr4 93887048 93887355 -61742765 + L1MA5 LINE L1 5593 5908 -392 5 1301 468 0 0 0 chr4 93887392 93887444 -61742676 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1301 1524 217 116 39 chr4 93887503 93887892 -61742228 - MTD LTR MaLR 0 419 1 5 1301 1074 83 0 0 chr4 93888342 93888487 -61741633 + B1_Mus1 SINE Alu 1 145 -3 5 1301 306 0 0 0 chr4 93888489 93888523 -61741597 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1301 274 250 33 0 chr4 93889336 93889428 -61740692 + L1MEc LINE L1 317 411 -5989 5 1301 427 344 162 3 chr4 93889510 93889819 -61740301 + L1MEc LINE L1 522 879 -5521 5 1301 611 26 0 13 chr4 93890541 93890619 -61739501 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 1301 180 115 56 37 chr4 93891429 93891483 -61738637 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 1301 292 382 124 28 chr4 93892067 93892285 -61737835 - MLT1J LTR MaLR -172 340 102 5 1301 525 307 16 0 chr4 93892399 93892526 -61737594 + B1F2 SINE Alu 19 147 -2 5 1301 269 56 0 0 chr4 93892732 93892768 -61737352 + U2 snRNA snRNA 1 36 -152 5 1301 463 325 8 16 chr4 93894169 93894294 -61735826 + RSINE1 SINE B4 2 125 -40 5 1301 198 103 0 0 chr4 93894337 93894366 -61735754 + (CAT)n Simple_repeat Simple_repeat 1 29 0 5 1301 571 305 19 0 chr4 93894390 93894544 -61735576 + RSINE1 SINE B4 3 159 -6 5 1301 377 16 31 31 chr4 93894872 93894936 -61735184 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1301 3238 61 0 0 chr4 93894954 93895366 -61734754 + L1_Mus1 LINE L1 6069 6480 -87 5 1301 347 251 409 28 chr4 93896317 93896724 -61733396 - L1MB5 LINE L1 -111 6063 5504 5 1301 2011 179 10 43 chr4 93896724 93896755 -61733365 + ORR1C1 LTR MaLR 1 26 -352 5 1301 1080 90 0 14 chr4 93896755 93896902 -61733218 + B1_Mus1 SINE Alu 2 146 -2 5 1301 261 0 0 0 chr4 93896902 93896931 -61733189 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1301 2011 179 10 43 chr4 93896931 93897289 -61732831 + ORR1C1 LTR MaLR 27 377 -1 5 1301 6226 182 160 8 chr4 93897292 93897898 -61732222 + ORR1C1-int LTR MaLR 7 648 -861 5 1301 606 204 20 47 chr4 93897898 93898047 -61732073 + B1_Mus2 SINE Alu 2 146 -1 5 1301 6226 182 160 8 chr4 93898047 93898745 -61731375 + ORR1C1-int LTR MaLR 649 1508 -1 5 1301 1832 144 65 62 chr4 93898745 93899114 -61731006 + ORR1C1 LTR MaLR 1 370 -8 5 1301 5082 170 22 13 chr4 93899314 93900233 -61729887 - Lx2 LINE L1 0 6997 6071 5 1301 329 257 27 25 chr4 93900555 93900692 -61729428 + MTEb LTR MaLR 241 379 0 5 1301 377 312 9 0 chr4 93902541 93902650 -61727470 + B4 SINE B4 116 225 -67 6 1301 885 315 56 37 chr4 93902654 93903245 -61726875 + Lx9 LINE L1 7016 7617 -27 6 1301 232 403 0 0 chr4 93903320 93903397 -61726723 + B4 SINE B4 215 291 -1 6 1301 479 60 0 15 chr4 93903598 93903666 -61726454 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1301 327 323 0 57 chr4 93903684 93903789 -61726331 - B4A SINE B4 -1 291 193 6 1301 6631 14 1 0 chr4 93904537 93905402 -61724718 - L1Md_T LINE L1 -627 5955 5090 6 1301 5273 30 0 0 chr4 93905402 93906012 -61724108 + L1Md_T LINE L1 5973 6582 0 6 1301 744 287 19 71 chr4 93906815 93907123 -61722997 + B4A SINE B4 1 292 0 6 1301 318 184 0 0 chr4 93907123 93907199 -61722921 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1301 610 294 17 11 chr4 93907219 93907398 -61722722 + B3A SINE B2 4 183 -15 6 1301 288 0 0 0 chr4 93907399 93907431 -61722689 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1301 625 24 24 0 chr4 93907432 93907515 -61722605 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 6 1301 46 68 0 0 chr4 93907529 93907617 -61722503 + AT_rich Low_complexity Low_complexity 1 88 0 6 1301 443 295 0 0 chr4 93907792 93907887 -61722233 - RSINE1 SINE B4 -68 97 3 6 1301 210 71 0 0 chr4 93907905 93907933 -61722187 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 6 1301 519 286 73 6 chr4 93908309 93908488 -61721632 - ORR1E LTR MaLR -168 191 1 6 1301 358 208 42 0 chr4 93909464 93909536 -61720584 + Tigger14a DNA MER2_type 209 283 -41 6 1301 214 344 53 21 chr4 93910159 93910254 -61719866 - MIR3 SINE MIR -23 185 88 6 1301 274 388 66 6 chr4 93911973 93912139 -61717981 - MER97c DNA MER1_type? -914 176 1 6 1301 952 58 0 0 chr4 93912386 93912506 -61717614 + B1_Mus1 SINE Alu 23 142 -6 6 1301 954 50 0 0 chr4 93912717 93912837 -61717283 + (GGAAA)n Simple_repeat Simple_repeat 1 120 0 6 1301 474 271 57 7 chr4 93913106 93913247 -61716873 + B1F2 SINE Alu 1 148 -1 6 1301 498 324 19 19 chr4 93913887 93914095 -61716025 - L1M2c LINE L1 -5204 1585 1378 6 1301 1379 255 76 6 chr4 93914319 93914662 -61715458 - MTE2b LTR MaLR -3 376 10 6 1301 318 287 36 20 chr4 93915667 93915947 -61714173 - L1M3c LINE L1 -4459 2330 2062 6 1301 444 269 40 11 chr4 93915956 93916133 -61713987 - L1M3c LINE L1 -4866 1853 1672 6 1301 357 335 26 40 chr4 93916137 93916364 -61713756 + L1_Mur3 LINE L1 73 296 -7432 6 1301 1379 188 54 24 chr4 93916401 93917066 -61713054 + L1_Mur3 LINE L1 870 1565 -4315 6 1301 5851 50 1 1 chr4 93917064 93917823 -61712297 - L1_Mm LINE L1 -12 5871 5113 6 1301 1234 280 20 3 chr4 93917837 93918181 -61711939 + Lx6 LINE L1 6378 6727 -733 6 1301 699 172 122 32 chr4 93918193 93918349 -61711771 + MTB_Mm LTR MaLR 183 352 -55 6 1301 408 370 33 5 chr4 93918415 93918627 -61711493 - L1M3c LINE L1 -5738 403 186 6 1301 851 325 30 41 chr4 93918648 93918943 -61711177 + B4A SINE B4 1 292 0 6 1301 30 27 0 0 chr4 93919083 93919120 -61711000 + AT_rich Low_complexity Low_complexity 1 37 0 6 1301 30 0 0 0 chr4 93919345 93919375 -61710745 + AT_rich Low_complexity Low_complexity 1 30 0 6 1301 1288 98 16 5 chr4 93919375 93919559 -61710561 - B2_Mm2 SINE B2 -8 187 2 6 1301 405 0 0 0 chr4 93919780 93919825 -61710295 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 1301 1075 102 0 0 chr4 93919856 93920003 -61710117 - B1_Mus1 SINE Alu 0 148 2 6 1301 238 345 65 92 chr4 93920042 93920307 -61709813 + L2c LINE L2 2981 3238 -137 6 1301 201 147 0 0 chr4 93920350 93920384 -61709736 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 1301 1706 229 22 11 chr4 93921170 93921537 -61708583 + ORR1D1 LTR MaLR 4 374 0 6 1301 879 311 139 21 chr4 93921654 93922123 -61707997 + Lx9 LINE L1 6747 7270 -374 6 1301 462 241 86 25 chr4 93922730 93922892 -61707228 + MLT2D LTR ERVL 33 204 -210 6 1301 440 243 5 0 chr4 93923705 93923884 -61706236 - Lx9 LINE L1 -29 7615 7388 6 1301 895 277 11 11 chr4 93923883 93924164 -61705956 + Lx9 LINE L1 7107 7387 -257 6 1301 6579 27 4 0 chr4 93925963 93926731 -61703389 - L1Md_F2 LINE L1 0 6582 5812 6 1301 401 252 37 46 chr4 93927256 93927364 -61702756 - B1_Mur1 SINE Alu 0 149 43 6 1301 3470 96 6 8 chr4 93928565 93929069 -61701051 - L1_Mus4 LINE L1 -5 6631 6129 6 1301 1417 68 16 0 chr4 93929069 93929261 -61700859 + L1_Mus4 LINE L1 5949 6143 -493 6 1301 210 98 0 56 chr4 93929409 93929463 -61700657 + GA-rich Low_complexity Low_complexity 1 51 0 6 1301 19902 75 8 1 chr4 93929832 93933300 -61696820 - L1Md_F2 LINE L1 -4 6578 3088 6 1301 5366 94 19 11 chr4 93933650 93934457 -61695663 + L1_Mus2 LINE L1 5736 6548 -18 6 1301 25407 91 26 2 chr4 93934456 93939180 -61690940 + L1Md_F2 LINE L1 452 5589 -297 6 1301 8021 43 9 0 chr4 93939181 93940154 -61689966 + L1Md_F2 LINE L1 5588 6569 -13 6 1301 702 0 0 0 chr4 93940158 93940236 -61689884 + (GAA)n Simple_repeat Simple_repeat 2 79 0 6 1301 4502 89 10 105 chr4 93940236 93941024 -61689096 + MTA_Mm-int LTR MaLR 386 1098 0 6 1301 2947 84 13 0 chr4 93941024 93941415 -61688705 + MTA_Mm LTR MaLR 1 396 0 6 1301 2080 96 33 0 chr4 93941416 93941717 -61688403 - L1VL2 LINE L1 -5853 482 172 6 1301 4715 152 48 0 chr4 93941874 93942645 -61687475 - Lx2 LINE L1 -3 6994 6187 6 1301 6653 153 38 12 chr4 93942647 93944313 -61685807 + Lx2 LINE L1 4448 6153 -844 6 1301 1282 28 21 58 chr4 93944470 93944659 -61685461 - L1Md_F3 LINE L1 0 6584 6403 6 1301 609 335 18 22 chr4 93946751 93946980 -61683140 - RMER15 LTR ERVL -14 561 334 6 1301 2678 173 27 18 chr4 93947167 93947744 -61682376 - Lx4B LINE L1 -137 6913 6262 6 1301 695 323 5 20 chr4 93947770 93947966 -61682154 + B3 SINE B2 1 193 -23 6 1301 189 0 0 0 chr4 93948293 93948314 -61681806 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1301 286 288 17 17 chr4 93953048 93953168 -61676952 + MER52-int LTR ERV1 5024 5143 -1948 6 1301 482 377 27 0 chr4 93956675 93956821 -61673299 - RSINE1 SINE B4 -13 152 3 6 1301 936 251 128 75 chr4 93957083 93957441 -61672679 + MTE2a LTR MaLR 3 379 0 6 1301 256 302 0 0 chr4 93957536 93957589 -61672531 + MER68 LTR ERVL 43 95 -468 6 1301 805 267 8 114 chr4 93957814 93958051 -61672069 + B4A SINE B4 58 269 -23 6 1301 465 122 0 0 chr4 93958052 93958126 -61671994 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1301 476 346 67 46 chr4 93958642 93959014 -61671106 + MER68-int LTR ERVL 15 394 -2596 6 1301 311 130 0 0 chr4 93959089 93959135 -61670985 + MER68-int LTR ERVL 584 629 -2361 6 1301 1362 299 62 50 chr4 93959312 93960017 -61670103 + MER68-int LTR ERVL 877 1590 -1400 6 1301 368 261 49 61 chr4 93960061 93960224 -61669896 + MER68-int LTR ERVL 2829 2989 -1 6 1301 540 341 70 13 chr4 93960245 93960474 -61669646 + MER68 LTR ERVL 35 276 -287 6 1301 284 285 22 115 chr4 93960483 93960622 -61669498 + MLT1C LTR MaLR 11 136 -331 6 1301 1151 275 15 11 chr4 93961473 93961738 -61668382 - B4 SINE B4 -1 291 26 6 1301 405 0 0 0 chr4 93961747 93961792 -61668328 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1301 4478 143 114 63 chr4 93961800 93962770 -61667350 - RLTR13D2 LTR ERVK -3 1020 1 6 1301 682 320 91 14 chr4 93962784 93962993 -61667127 - B4A SINE B4 0 292 68 6 1301 24 0 0 0 chr4 93963038 93963062 -61667058 + AT_rich Low_complexity Low_complexity 1 24 0 6 1301 255 371 9 0 chr4 93963127 93963232 -61666888 + PB1D7 SINE Alu 13 118 -2 6 1301 2578 89 101 5 chr4 93963232 93963617 -61666503 + BGLII_Mus LTR ERVK 1 422 0 6 1301 231 241 145 0 chr4 93965901 93965984 -61664136 - L1ME2 LINE L1 -30 6134 6040 6 1301 621 237 135 0 chr4 93966132 93966406 -61663714 - L1MEc LINE L1 -5409 991 681 6 1301 299 299 52 0 chr4 93966788 93966922 -61663198 - L1MEc LINE L1 -6215 185 45 6 1301 189 292 153 0 chr4 93967152 93967224 -61662896 + MIRc SINE MIR 53 135 -133 6 1301 21 36 0 0 chr4 93967423 93967451 -61662669 + AT_rich Low_complexity Low_complexity 1 28 0 6 1301 253 287 129 22 chr4 93968556 93968695 -61661425 + MIRb SINE MIR 8 161 -107 6 1301 5238 106 12 35 chr4 93969950 93970785 -61659335 - Lx3C LINE L1 -2 6974 6159 6 1301 1069 209 54 15 chr4 93971368 93971723 -61658397 + MTD LTR MaLR 1 419 0 6 1301 2052 187 136 26 chr4 93971827 93972430 -61657690 + Lx9 LINE L1 6976 7644 0 6 1301 1412 310 74 20 chr4 93973346 93973793 -61656327 + Lx8 LINE L1 6518 6999 -474 6 1301 510 17 0 0 chr4 93973793 93973852 -61656268 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1301 1412 310 74 20 chr4 93973852 93974065 -61656055 + Lx8 LINE L1 7000 7213 -260 6 1301 2749 53 0 0 chr4 93974138 93974478 -61655642 + L1Md_F2 LINE L1 6231 6570 -12 6 1301 2889 242 151 13 chr4 93975745 93976675 -61653445 + Lx9 LINE L1 6581 7638 -6 6 1301 407 96 0 52 chr4 93977859 93977936 -61652184 + L1Md_F2 LINE L1 6498 6570 -12 6 1301 665 123 7 0 chr4 93978329 93978467 -61651653 + (TC)n Simple_repeat Simple_repeat 1 139 0 6 1301 288 0 0 0 chr4 93978467 93978499 -61651621 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1302 34 24 0 0 chr4 93978751 93978792 -61651328 + AT_rich Low_complexity Low_complexity 1 41 0 6 1302 482 102 56 22 chr4 93986171 93986261 -61643859 - B2_Mm1t SINE B2 0 193 101 6 1302 324 0 0 0 chr4 93990899 93990935 -61639185 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1302 1732 249 86 35 chr4 93991022 93991712 -61638408 - L1MA6 LINE L1 -237 6063 5339 6 1302 390 42 0 0 chr4 93991805 93991853 -61638267 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1302 252 0 0 0 chr4 93994547 93994575 -61635545 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1302 612 0 0 0 chr4 93996973 93997041 -61633079 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1302 197 407 53 43 chr4 93997147 93997355 -61632765 + L2b LINE L2 2975 3184 -191 6 1302 27 29 0 0 chr4 93998459 93998493 -61631627 + AT_rich Low_complexity Low_complexity 1 34 0 6 1302 5501 71 5 0 chr4 93999249 94000000 -61630120 - L1Md_F2 LINE L1 -4 6578 5824 6 1302 33912 72 2 5 chr4 94000000 94005225 -61624895 - L1Md_A LINE L1 -60 5823 620 1 1302 505 186 41 0 chr4 94005226 94005323 -61624797 - ORR1D2 LTR MaLR -2 368 268 2 1302 689 237 101 124 chr4 94005420 94005535 -61624585 - ORR1D2 LTR MaLR -121 249 128 2 1302 549 0 0 0 chr4 94005535 94005596 -61624524 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1302 689 237 101 124 chr4 94005596 94005697 -61624423 - ORR1D2 LTR MaLR -202 168 14 2 1302 417 20 0 0 chr4 94007939 94007989 -61622131 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1302 1297 260 52 19 chr4 94011194 94011559 -61618561 - MTE2b LTR MaLR -2 377 1 5 1302 234 353 106 27 chr4 94011585 94011841 -61618279 + L2 LINE L2 1367 1642 -1777 6 1302 290 371 27 47 chr4 94011981 94012131 -61617989 + B1F1 SINE Alu 3 149 0 7 1302 329 93 0 18 chr4 94012163 94012218 -61617902 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1302 183 281 53 0 chr4 94012340 94012397 -61617723 + MER5B DNA MER1_type 118 177 -1 9 1302 2000 159 12 0 chr4 94012409 94012730 -61617390 + ORR1A3 LTR MaLR 1 325 -1 1 1302 290 79 63 0 chr4 94012733 94012796 -61617324 + (TTG)n Simple_repeat Simple_repeat 2 68 0 1 1302 230 386 71 12 chr4 94014084 94014252 -61615868 + MIRb SINE MIR 51 228 -40 1 1302 24 0 0 0 chr4 94014361 94014385 -61615735 + AT_rich Low_complexity Low_complexity 1 24 0 1 1302 304 296 139 62 chr4 94014839 94014935 -61615185 - LTR16A LTR ERVL -8 443 330 1 1302 420 20 0 0 chr4 94014935 94014984 -61615136 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1302 304 296 139 62 chr4 94014984 94015096 -61615024 - LTR16A LTR ERVL -122 329 219 1 1302 586 299 132 29 chr4 94015401 94015811 -61614309 + Charlie10 DNA MER1_type 2287 2738 -84 1 1302 339 333 37 53 chr4 94016006 94016196 -61613924 + MamRep564 Unknown Unknown 100 286 -71 1 1302 1121 252 128 14 chr4 94016927 94017217 -61612903 - MTE2b LTR MaLR -16 363 41 1 1302 729 215 7 22 chr4 94018133 94018271 -61611849 + B1_Mur2 SINE Alu 9 144 -5 1 1302 230 237 17 17 chr4 94018736 94018796 -61611324 + GA-rich Low_complexity Low_complexity 1 60 0 2 1302 279 224 0 0 chr4 94019224 94019300 -61610820 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1302 416 282 6 94 chr4 94019776 94019956 -61610164 + RSINE1 SINE B4 2 165 0 2 1302 471 309 32 16 chr4 94020288 94020413 -61609707 + RSINE1 SINE B4 11 137 -28 2 1302 30 27 0 0 chr4 94020868 94020905 -61609215 + AT_rich Low_complexity Low_complexity 1 37 0 2 1302 214 191 0 0 chr4 94020946 94020988 -61609132 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2 1302 423 0 0 0 chr4 94021887 94021934 -61608186 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1302 189 94 0 0 chr4 94022144 94022176 -61607944 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1302 276 53 0 0 chr4 94022218 94022256 -61607864 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1302 492 18 0 0 chr4 94022260 94022317 -61607803 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1302 235 326 137 7 chr4 94022636 94022775 -61607345 - MIRc SINE MIR -64 204 48 2 1302 198 418 23 69 chr4 94023042 94023118 -61607002 + L2a LINE L2 3098 3174 -201 3 1302 1821 201 67 56 chr4 94023118 94023471 -61606649 + RLTR11A2 LTR ERVK 1 342 -185 3 1302 1148 84 0 0 chr4 94023471 94023614 -61606506 + B1_Mus1 SINE Alu 1 143 -5 3 1302 1821 201 67 56 chr4 94023614 94023781 -61606339 + RLTR11A2 LTR ERVK 343 527 0 3 1302 213 321 44 78 chr4 94023781 94024003 -61606117 + L2a LINE L2 3175 3426 0 3 1302 25 0 0 0 chr4 94024056 94024081 -61606039 + AT_rich Low_complexity Low_complexity 1 25 0 3 1302 183 216 149 64 chr4 94025100 94025194 -61604926 - L3 LINE CR1 -4383 106 5 3 1302 267 404 20 20 chr4 94026160 94026314 -61603806 - L2a LINE L2 -338 3088 2932 3 1302 222 37 0 0 chr4 94026388 94026415 -61603705 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1302 204 299 116 35 chr4 94026666 94026839 -61603281 - MIR SINE MIR -64 198 12 3 1302 204 158 0 26 chr4 94028076 94028115 -61602005 + CT-rich Low_complexity Low_complexity 5 42 0 3 1302 585 95 8 17 chr4 94029516 94029634 -61600486 + (TTTTG)n Simple_repeat Simple_repeat 4 120 0 3 1302 272 286 96 58 chr4 94029648 94029804 -61600316 + MIRb SINE MIR 83 244 -24 4 1302 810 285 219 21 chr4 94030161 94030494 -61599626 - MT2A LTR ERVL -134 399 1 4 1302 729 0 0 0 chr4 94030552 94030633 -61599487 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1302 265 260 92 20 chr4 94030633 94030731 -61599389 - PB1D10 SINE Alu -12 105 1 4 1302 772 281 74 65 chr4 94030788 94031127 -61598993 + L3 LINE CR1 3530 3871 -618 4 1302 794 64 0 9 chr4 94031720 94031830 -61598290 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 4 1302 210 351 51 41 chr4 94034492 94034590 -61595530 + PB1D7 SINE Alu 21 119 -1 4 1302 476 238 34 82 chr4 94035074 94035307 -61594813 + RCHARR1 DNA MER1_type 753 974 0 4 1302 565 319 0 11 chr4 94035998 94036188 -61593932 + B3A SINE B2 1 188 -10 4 1302 516 84 0 0 chr4 94036202 94036285 -61593835 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1302 270 0 0 0 chr4 94036285 94036315 -61593805 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1302 1083 202 15 5 chr4 94036454 94036658 -61593462 + B3 SINE B2 5 210 -6 5 1302 21 36 0 0 chr4 94038652 94038680 -61591440 + AT_rich Low_complexity Low_complexity 1 28 0 5 1302 538 261 0 25 chr4 94038686 94038804 -61591316 + B3A SINE B2 1 115 -83 5 1302 471 35 0 0 chr4 94038827 94038884 -61591236 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1302 297 0 0 0 chr4 94038884 94038916 -61591204 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1302 23 68 0 0 chr4 94038916 94038960 -61591160 + AT_rich Low_complexity Low_complexity 1 44 0 5 1302 1219 285 102 33 chr4 94039090 94039162 -61590958 + MTD LTR MaLR 1 73 -346 5 1302 837 8 91 0 chr4 94039162 94039294 -61590826 + (TTGG)n Simple_repeat Simple_repeat 2 145 0 5 1302 1219 285 102 33 chr4 94039294 94039613 -61590507 + MTD LTR MaLR 74 419 0 5 1302 4870 235 63 18 chr4 94039654 94041039 -61589081 + Lx9 LINE L1 5862 7416 -228 5 1302 387 0 0 0 chr4 94041043 94041086 -61589034 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1302 6370 194 57 20 chr4 94041176 94042615 -61587505 + Lx5 LINE L1 5584 7047 -3 6 1302 285 189 116 0 chr4 94042632 94042727 -61587393 + Lx9 LINE L1 7532 7637 -7 5 1302 213 281 50 45 chr4 94043181 94043308 -61586812 + MIR3 SINE MIR 54 220 -48 6 1302 288 0 0 0 chr4 94043346 94043378 -61586742 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1302 277 240 10 20 chr4 94043602 94043704 -61586416 + GA-rich Low_complexity Low_complexity 1 101 0 6 1302 252 381 35 12 chr4 94044080 94044165 -61585955 + ID SINE ID 3 89 -135 6 1302 318 257 34 68 chr4 94044220 94044337 -61585783 - MER67D LTR ERV1 -97 417 305 6 1302 808 286 56 34 chr4 94044651 94045064 -61585056 - L1MA6 LINE L1 -286 6014 5593 6 1302 4945 63 2 3 chr4 94047654 94048319 -61581801 + L1_Mus1 LINE L1 5935 6567 0 6 1302 25 31 0 0 chr4 94048731 94048763 -61581357 + AT_rich Low_complexity Low_complexity 1 32 0 6 1302 4342 184 25 20 chr4 94049367 94050243 -61579877 + Lx2B LINE L1 6117 6996 -4 7 1302 1457 170 103 3 chr4 94050487 94050799 -61579321 - Lx9 LINE L1 -717 6927 6585 7 1302 528 311 47 74 chr4 94051732 94052053 -61578067 + B4A SINE B4 1 282 -10 7 1302 1000 305 91 39 chr4 94055245 94055824 -61574296 + Lx7 LINE L1 6836 7444 -29 7 1302 366 23 0 0 chr4 94056600 94056643 -61573477 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1302 378 0 0 0 chr4 94056643 94056684 -61573436 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1302 367 236 129 8 chr4 94056720 94056844 -61573276 + MLT1A1 LTR MaLR 262 400 -8 7 1302 393 222 135 53 chr4 94057292 94057425 -61572695 - RSINE1 SINE B4 -19 146 3 7 1302 335 293 46 58 chr4 94057979 94058153 -61571967 + LTR33 LTR ERVL 3 174 -341 7 1302 286 264 107 8 chr4 94059703 94059825 -61570295 - B4 SINE B4 -157 135 2 7 1302 595 276 64 32 chr4 94061914 94062071 -61568049 - RSINE1 SINE B4 -1 164 3 8 1302 23 0 0 0 chr4 94062966 94062989 -61567131 + AT_rich Low_complexity Low_complexity 1 23 0 8 1302 322 266 0 48 chr4 94063403 94063486 -61566634 + ID4 SINE ID 5 83 0 8 1302 212 200 25 0 chr4 94066097 94066137 -61563983 + B4 SINE B4 8 48 -244 8 1302 567 0 0 0 chr4 94066153 94066216 -61563904 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 8 1302 22 56 0 0 chr4 94066784 94066820 -61563300 + AT_rich Low_complexity Low_complexity 1 36 0 8 1302 547 304 56 15 chr4 94067274 94067471 -61562649 - MLT1B LTR MaLR -4 386 182 8 1302 2111 44 3 39 chr4 94067715 94068001 -61562119 + L1Md_F3 LINE L1 6309 6584 0 8 1302 192 111 0 0 chr4 94068023 94068059 -61562061 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1302 516 227 390 18 chr4 94068378 94068668 -61561452 + L1MA5 LINE L1 4469 4895 -1248 8 1302 1053 286 90 53 chr4 94068671 94069318 -61560802 + L1MA5 LINE L1 5254 5924 -373 8 1302 2350 134 2 35 chr4 94069798 94070200 -61559920 - Lx2 LINE L1 0 6997 6609 9 1302 593 182 19 38 chr4 94071493 94071653 -61558467 - Lx9 LINE L1 -6 7638 7482 9 1302 450 0 0 0 chr4 94071762 94071812 -61558308 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1302 327 104 0 0 chr4 94071813 94071861 -61558259 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1302 803 224 87 30 chr4 94071868 94072098 -61558022 - Lx9 LINE L1 -183 7461 7219 9 1302 261 186 0 0 chr4 94072103 94072146 -61557974 + Lx9 LINE L1 6711 6753 -891 9 1302 258 32 0 0 chr4 94072147 94072178 -61557942 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1302 204 270 27 0 chr4 94072250 94072324 -61557796 - MIRc SINE MIR 0 268 193 9 1302 353 276 87 87 chr4 94073034 94073217 -61556903 + MER5A DNA MER1_type 6 188 -1 9 1302 498 265 91 51 chr4 94075234 94075409 -61554711 + B3A SINE B2 1 182 -16 9 1302 28 48 0 0 chr4 94075415 94075457 -61554663 + AT_rich Low_complexity Low_complexity 1 42 0 9 1302 204 366 23 47 chr4 94076046 94076121 -61553999 + L2c LINE L2 3254 3328 -59 1 1302 658 245 45 55 chr4 94076121 94076320 -61553800 - B3A SINE B2 0 198 2 1 1302 204 366 23 47 chr4 94076320 94076373 -61553747 + L2c LINE L2 3329 3379 -8 1 1302 266 363 10 0 chr4 94076468 94076570 -61553550 + ID_B1 SINE B4 74 176 -48 1 1302 338 314 38 0 chr4 94076483 94076588 -61553532 + PB1D10 SINE Alu 9 117 0 1 1302 306 0 0 0 chr4 94076785 94076819 -61553301 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1302 441 0 0 0 chr4 94076937 94076986 -61553134 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 1 1302 2326 118 63 6 chr4 94077318 94077683 -61552437 - Lx2 LINE L1 0 6997 6612 1 1302 502 316 45 75 chr4 94079188 94079455 -61550665 + MLT1B LTR MaLR 128 386 -4 1 1302 617 322 106 39 chr4 94079979 94080338 -61549782 + MLT1A1 LTR MaLR 1 383 -25 1 1302 261 0 0 0 chr4 94080338 94080367 -61549753 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1302 996 254 112 48 chr4 94081015 94081308 -61548812 + MTD LTR MaLR 97 405 -14 1 1302 511 243 110 52 chr4 94081403 94081555 -61548565 + B3 SINE B2 1 154 -41 1 1302 273 29 0 0 chr4 94081555 94081589 -61548531 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1302 860 114 0 7 chr4 94081589 94081730 -61548390 + (TAGA)n Simple_repeat Simple_repeat 3 142 0 1 1302 400 266 59 71 chr4 94081730 94081746 -61548374 + B2_Mm2 SINE B2 155 167 -28 1 1302 869 202 22 0 chr4 94084647 94084830 -61545290 + Lx5 LINE L1 6861 7047 -3 1 1302 445 248 6 131 chr4 94086182 94086246 -61543874 + MT2B LTR ERVL 111 152 -449 1 1302 999 63 0 0 chr4 94086246 94086373 -61543747 + B1_Mus1 SINE Alu 2 128 -20 1 1302 696 282 9 9 chr4 94086826 94087048 -61543072 + Lx7 LINE L1 6584 6805 -891 1 1302 346 363 33 61 chr4 94088050 94088264 -61541856 - MLT1J2 LTR MaLR -1 447 240 1 1302 477 0 0 0 chr4 94088282 94088335 -61541785 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1302 240 321 0 13 chr4 94088441 94088520 -61541600 - MIR SINE MIR -72 190 113 1 1302 509 305 6 79 chr4 94088558 94088736 -61541384 + RSINE1 SINE B4 1 165 0 1 1302 559 339 37 21 chr4 94088771 94088990 -61541130 - MLT1D LTR MaLR -3 502 280 1 1302 911 117 7 7 chr4 94088990 94089136 -61540984 - URR1A DNA MER1_type 0 226 81 1 1302 513 0 0 0 chr4 94089229 94089286 -61540834 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1302 378 0 0 0 chr4 94089286 94089327 -61540793 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1302 268 282 87 0 chr4 94089544 94089647 -61540473 + L1M2 LINE L1 5664 5775 -525 1 1302 816 311 22 0 chr4 94089652 94089922 -61540198 + B4 SINE B4 1 276 -16 1 1302 241 170 0 19 chr4 94089988 94090042 -61540078 + L1M2 LINE L1 5773 5825 -478 1 1302 248 298 8 16 chr4 94090155 94090278 -61539842 + L1MA6 LINE L1 5871 5992 -308 1 1302 234 0 0 0 chr4 94090464 94090490 -61539630 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1302 229 246 98 0 chr4 94090523 94090584 -61539536 + PB1D10 SINE Alu 23 89 -28 1 1302 281 191 25 139 chr4 94090828 94090907 -61539213 - MTD LTR MaLR -12 367 298 1 1302 3586 212 43 13 chr4 94090907 94091737 -61538383 + Lx5 LINE L1 5889 6743 -307 1 1302 586 324 71 31 chr4 94091737 94091963 -61538157 - MTD LTR MaLR -81 338 104 1 1302 489 252 22 37 chr4 94091995 94092131 -61537989 + Lx5 LINE L1 6890 7023 -27 1 1302 1460 121 188 10 chr4 94092191 94092484 -61537636 - IAPLTR4 LTR ERVK 0 345 1 1 1302 297 309 0 12 chr4 94092940 94093022 -61537098 + ID4_ SINE ID 2 82 -1 1 1302 307 246 186 0 chr4 94093118 94093236 -61536884 - HAL1-3A_ME LINE L1 -730 2128 1989 1 1302 220 154 57 19 chr4 94093348 94093401 -61536719 + (CACTA)n Simple_repeat Simple_repeat 2 56 0 1 1302 362 290 0 0 chr4 94095742 94095849 -61534271 + RMER1C Other Other 30 136 -1206 1 1302 1641 181 167 42 chr4 94095883 94096343 -61533777 + RMER1C Other Other 369 1286 -56 1 1302 441 0 0 0 chr4 94096343 94096392 -61533728 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1302 1641 176 173 44 chr4 94096392 94096427 -61533693 + RMER1C Other Other 1287 1333 -9 1 1302 5220 156 133 10 chr4 94096597 94097589 -61532531 - RLTR13D3 LTR ERVK 0 1114 1 1 1302 254 193 43 117 chr4 94098489 94098583 -61531537 + Charlie18a DNA MER1_type 148 234 -108 1 1302 508 243 1 0 chr4 94099790 94099901 -61530219 + PB1D7 SINE Alu 6 117 -3 1 1302 1347 64 0 0 chr4 94100476 94100681 -61529439 + (TC)n Simple_repeat Simple_repeat 1 205 0 1 1302 711 269 6 28 chr4 94100991 94101167 -61528953 - 7SK RNA RNA -152 179 8 1 1302 21 0 0 0 chr4 94101444 94101465 -61528655 + AT_rich Low_complexity Low_complexity 1 21 0 1 1302 228 67 0 0 chr4 94102874 94102904 -61527216 + (CTTA)n Simple_repeat Simple_repeat 1 30 0 1 1302 368 71 18 0 chr4 94102905 94102961 -61527159 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1 1302 364 321 22 7 chr4 94103048 94103186 -61526934 - B1F2 SINE Alu -5 144 5 1 1302 646 270 141 12 chr4 94103196 94103645 -61526475 - L1MB2 LINE L1 -4 6167 5661 1 1302 213 274 91 30 chr4 94103826 94103944 -61526176 - MIR SINE MIR -94 174 51 1 1302 294 87 0 0 chr4 94103945 94103991 -61526129 + (TTG)n Simple_repeat Simple_repeat 3 48 0 1 1302 1155 118 0 0 chr4 94105192 94105692 -61524428 + (CA)n Simple_repeat Simple_repeat 1 500 0 1 1302 741 241 71 24 chr4 94106856 94107068 -61523052 + ID_B1 SINE B4 2 223 -1 1 1302 207 69 0 0 chr4 94107338 94107367 -61522753 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1302 644 282 129 12 chr4 94107387 94107642 -61522478 - B4A SINE B4 -6 286 2 1 1302 2157 128 19 0 chr4 94107668 94107989 -61522131 + ORR1A2 LTR MaLR 1 327 0 1 1302 682 330 26 5 chr4 94108703 94108895 -61521225 + ID_B1 SINE B4 3 198 -26 1 1302 283 149 45 36 chr4 94108903 94109014 -61521106 + (CAGA)n Simple_repeat Simple_repeat 1 112 0 1 1302 2940 32 9 0 chr4 94109348 94109691 -61520429 - ORR1A0 LTR MaLR 0 346 1 1 1303 909 303 15 130 chr4 94110942 94111272 -61518848 - B4A SINE B4 0 292 1 1 1303 269 263 19 48 chr4 94111302 94111406 -61518714 - PB1 SINE Alu -22 105 5 1 1303 634 330 53 13 chr4 94111512 94111791 -61518329 + MLT1D LTR MaLR 259 624 -3 1 1303 721 286 69 18 chr4 94112644 94112918 -61517202 - B4A SINE B4 -2 290 3 1 1303 944 223 24 5 chr4 94113999 94114211 -61515909 + B3 SINE B2 1 216 0 1 1303 31 26 0 0 chr4 94114211 94114249 -61515871 + AT_rich Low_complexity Low_complexity 1 38 0 1 1303 812 241 120 0 chr4 94114350 94114541 -61515579 + B3 SINE B2 1 214 -2 1 1303 29 0 0 0 chr4 94115157 94115186 -61514934 + AT_rich Low_complexity Low_complexity 1 29 0 1 1303 237 282 14 0 chr4 94115220 94115291 -61514829 + LTR90B LTR LTR 725 796 0 1 1303 803 10 10 0 chr4 94116460 94116556 -61513564 + (CTTTG)n Simple_repeat Simple_repeat 2 98 0 1 1303 854 188 0 0 chr4 94116556 94116694 -61513426 - B1_Mur2 SINE Alu -10 139 2 1 1303 560 223 0 8 chr4 94116858 94116989 -61513131 + BC1_Mm scRNA scRNA 1 130 -22 1 1303 537 58 0 0 chr4 94116989 94117058 -61513062 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 1 1303 2231 140 57 29 chr4 94117120 94117503 -61512617 + ORR1B1 LTR MaLR 1 394 0 1 1303 253 333 58 0 chr4 94117574 94117643 -61512477 - ID4 SINE ID -6 77 5 1 1303 377 315 46 23 chr4 94117655 94117785 -61512335 - ID_B1 SINE B4 -2 222 90 1 1303 280 294 35 23 chr4 94117709 94117796 -61512324 - PB1D10 SINE Alu -29 88 1 1 1303 306 296 117 70 chr4 94118495 94118666 -61511454 - MLT1K LTR MaLR -25 570 392 1 1303 902 253 104 61 chr4 94118775 94119123 -61510997 - MTE2a LTR MaLR 0 419 46 1 1303 498 204 8 115 chr4 94119123 94119245 -61510875 + B1_Mur4 SINE Alu 1 109 -41 1 1303 6211 72 12 11 chr4 94119334 94120160 -61509960 + Lx3_Mus LINE L1 6167 6993 -16 1 1303 5542 186 70 10 chr4 94120160 94121462 -61508658 + Lx5 LINE L1 5589 7005 -45 1 1303 1880 254 68 37 chr4 94121507 94122096 -61508024 - Lx7 LINE L1 -472 7224 6618 1 1303 1873 201 49 0 chr4 94122096 94122444 -61507676 - ORR1D1 LTR MaLR -3 371 7 1 1303 1125 314 66 26 chr4 94122444 94122947 -61507173 - Lx7 LINE L1 -1083 6613 6091 1 1303 232 182 0 0 chr4 94122945 94122989 -61507131 - L1M2 LINE L1 -740 5557 5514 1 1303 265 280 87 34 chr4 94123035 94123301 -61506819 + L1MB2 LINE L1 5892 6171 0 1 1303 304 173 39 0 chr4 94123837 94123889 -61506231 - MamRep605 Unknown Unknown -802 74 21 1 1303 206 377 17 9 chr4 94124525 94124640 -61505480 - MIRb SINE MIR -108 160 45 1 1303 632 301 107 21 chr4 94124655 94124842 -61505278 + ID_B1 SINE B4 2 204 -20 1 1303 2082 142 3 0 chr4 94125074 94125399 -61504721 + ORR1A3 LTR MaLR 1 326 0 1 1303 365 246 272 28 chr4 94125592 94125809 -61504311 - RLTR12B LTR ERVK -242 286 17 1 1303 345 275 109 34 chr4 94126057 94126172 -61503948 - L1M5 LINE L1 -712 5452 5324 1 1303 2640 180 57 4 chr4 94126172 94126668 -61503452 - Lx5 LINE L1 -3 7047 6526 1 1303 345 284 104 33 chr4 94126668 94126717 -61503403 - L1M5 LINE L1 -861 5323 5277 1 1303 971 300 70 27 chr4 94126717 94126895 -61503225 + L1ME2 LINE L1 5477 5659 -535 1 1303 270 0 0 0 chr4 94126895 94126925 -61503195 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1303 971 295 71 26 chr4 94126925 94127272 -61502848 + L1ME2 LINE L1 5660 6024 -140 1 1303 300 175 16 16 chr4 94127545 94127609 -61502511 - ID4_ SINE ID -18 65 2 1 1303 478 0 32 0 chr4 94128048 94128110 -61502010 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1303 375 290 21 11 chr4 94129334 94129428 -61500692 + RSINE1 SINE B4 4 98 -67 1 1303 488 245 43 0 chr4 94129443 94129537 -61500583 + B1F1 SINE Alu 6 103 -46 1 1303 306 0 0 0 chr4 94129538 94129572 -61500548 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1303 1231 41 0 0 chr4 94129591 94129736 -61500384 + B1_Mm SINE Alu 3 147 0 2 1303 693 57 14 114 chr4 94129868 94130008 -61500112 + L1Md_F3 LINE L1 6459 6584 0 2 1303 466 211 48 55 chr4 94130156 94130321 -61499799 + L1MC4a LINE L1 7643 7806 -76 2 1303 1079 184 32 9 chr4 94131425 94131645 -61498475 + URR1B DNA MER1_type 1 225 0 2 1303 478 236 82 8 chr4 94133091 94133225 -61496895 + B1F1 SINE Alu 4 149 0 2 1303 1056 56 0 0 chr4 94133259 94133401 -61496719 + B1_Mus2 SINE Alu 6 147 0 2 1303 189 0 0 0 chr4 94133401 94133422 -61496698 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1303 288 0 0 0 chr4 94133617 94133649 -61496471 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1303 23 86 0 0 chr4 94133877 94133935 -61496185 + AT_rich Low_complexity Low_complexity 1 58 0 2 1303 180 97 0 0 chr4 94134318 94134349 -61495771 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1303 240 288 82 0 chr4 94135318 94135391 -61494729 + PB1D10 SINE Alu 13 91 -26 2 1303 231 293 131 24 chr4 94137152 94137236 -61492884 - L2c LINE L2 -3 3384 3292 2 1303 31 0 0 0 chr4 94137914 94137945 -61492175 + AT_rich Low_complexity Low_complexity 1 31 0 2 1303 557 280 67 5 chr4 94138506 94138714 -61491406 + ID_B1 SINE B4 2 222 -2 2 1303 459 335 60 66 chr4 94139960 94140261 -61489859 + MLT1A LTR MaLR 8 306 -68 2 1303 480 264 124 47 chr4 94141203 94141461 -61488659 - RMER5 LTR ERV1 -25 509 232 2 1303 21 57 0 0 chr4 94142430 94142465 -61487655 + AT_rich Low_complexity Low_complexity 1 35 0 2 1303 595 312 125 58 chr4 94143805 94144118 -61486002 - MTEa LTR MaLR -43 336 3 2 1303 421 274 113 31 chr4 94144693 94144969 -61485151 + L1M4 LINE L1 5149 5442 -2600 2 1303 744 96 8 23 chr4 94145250 94145378 -61484742 + Lx LINE L1 6529 6654 0 2 1303 736 296 88 74 chr4 94145775 94146059 -61484061 + B4A SINE B4 5 292 0 2 1303 890 183 83 5 chr4 94146459 94146651 -61483469 + B3 SINE B2 2 208 -8 2 1303 844 70 16 0 chr4 94146651 94146780 -61483340 + (GA)n Simple_repeat Simple_repeat 2 132 0 2 1303 1164 209 244 18 chr4 94146784 94147170 -61482950 + RMER15 LTR ERVL 33 505 -70 2 1303 840 138 19 76 chr4 94147374 94147531 -61482589 - B1_Mur3 SINE Alu -1 148 1 2 1303 451 230 40 10 chr4 94148178 94148279 -61481841 + B1F SINE Alu 17 120 -29 2 1303 1231 40 0 0 chr4 94148319 94148467 -61481653 + B1_Mus1 SINE Alu 1 148 0 2 1303 27 0 0 0 chr4 94148585 94148612 -61481508 + AT_rich Low_complexity Low_complexity 1 27 0 2 1303 738 159 312 0 chr4 94148615 94148785 -61481335 - URR1A DNA MER1_type -2 224 2 2 1303 186 43 0 0 chr4 94148889 94148912 -61481208 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 1303 1605 279 10 25 chr4 94149348 94149644 -61480476 + Lx7 LINE L1 6805 7104 -592 2 1303 1475 148 95 86 chr4 94149644 94149970 -61480150 + ORR1A4 LTR MaLR 1 329 0 2 1303 1605 279 10 25 chr4 94149970 94150191 -61479929 + Lx7 LINE L1 7105 7314 -382 2 1303 354 308 91 33 chr4 94151002 94151101 -61479019 + L1MEf LINE L1 760 872 -5328 2 1303 210 71 0 0 chr4 94151101 94151129 -61478991 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1303 354 308 91 33 chr4 94151129 94151392 -61478728 + L1MEf LINE L1 873 1143 -5057 2 1303 295 241 159 28 chr4 94151415 94151560 -61478560 + L1MEf LINE L1 1355 1518 -4682 2 1303 251 258 220 40 chr4 94151568 94151940 -61478180 + L1MEc LINE L1 40 478 -5922 2 1303 356 336 62 0 chr4 94152017 94152243 -61477877 + L1MEc LINE L1 605 844 -5556 2 1303 261 333 57 23 chr4 94152439 94152703 -61477417 + L1MEc LINE L1 1187 1459 -4941 2 1303 689 269 102 10 chr4 94152749 94153053 -61477067 + L1MB7 LINE L1 5821 6152 -32 2 1303 202 184 0 58 chr4 94154109 94154161 -61475959 + C-rich Low_complexity Low_complexity 3 51 0 2 1303 894 270 5 28 chr4 94154195 94154412 -61475708 - B3 SINE B2 0 216 5 2 1303 548 226 98 0 chr4 94154424 94154557 -61475563 - B1_Mur2 SINE Alu 0 149 4 2 1303 849 20 0 0 chr4 94154678 94154777 -61475343 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 2 1303 667 155 178 13 chr4 94156075 94156232 -61473888 + B3A SINE B2 4 186 -12 2 1303 533 285 31 0 chr4 94156269 94156399 -61473721 + RSINE1 SINE B4 1 134 -31 2 1303 23 33 0 0 chr4 94156402 94156432 -61473688 + AT_rich Low_complexity Low_complexity 1 30 0 2 1303 512 276 197 26 chr4 94156605 94156839 -61473281 - B4 SINE B4 -18 274 1 2 1303 2200 166 39 23 chr4 94156839 94157270 -61472850 - Lx5 LINE L1 -46 7004 6567 2 1303 772 140 28 35 chr4 94157376 94157517 -61472603 + B1_Mus1 SINE Alu 9 148 0 2 1303 330 312 64 77 chr4 94157381 94157537 -61472583 + B4 SINE B4 95 248 -44 2 1303 218 264 0 0 chr4 94159588 94159641 -61470479 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1303 387 288 106 38 chr4 94159775 94160258 -61469862 + L1_Mur3 LINE L1 1203 1701 -4146 2 1303 319 362 101 27 chr4 94160692 94161030 -61469090 + HAL1 LINE L1 1379 1741 -766 2 1303 386 303 89 31 chr4 94161160 94161552 -61468568 + HAL1 LINE L1 1984 2398 -109 2 1303 270 0 0 0 chr4 94161817 94161847 -61468273 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1303 289 271 0 0 chr4 94161958 94162043 -61468077 + Lx6 LINE L1 7365 7449 -11 2 1303 508 335 65 35 chr4 94162483 94162743 -61467377 - B4A SINE B4 -1 291 24 2 1303 289 258 93 39 chr4 94162844 94162973 -61467147 + B1F SINE Alu 2 137 -12 2 1303 374 308 34 0 chr4 94162974 94163091 -61467029 + RSINE1 SINE B4 4 124 -41 2 1303 279 0 0 0 chr4 94163091 94163122 -61466998 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1303 26 23 0 23 chr4 94163141 94163155 -61466965 + AT_rich Low_complexity Low_complexity 1 14 0 2 1303 1409 76 32 0 chr4 94163155 94163340 -61466780 - B2_Mm2 SINE B2 -4 191 1 2 1303 26 23 0 23 chr4 94163340 94163369 -61466751 + AT_rich Low_complexity Low_complexity 1 29 0 2 1303 512 231 144 23 chr4 94163385 94163558 -61466562 + B3A SINE B2 1 194 -4 2 1303 1467 51 10 0 chr4 94164308 94164505 -61465615 + L1Md_F2 LINE L1 6384 6582 0 2 1303 247 273 32 74 chr4 94165201 94165296 -61464824 + B1F1 SINE Alu 1 91 -58 2 1303 1269 101 26 5 chr4 94165329 94165518 -61464602 + B2_Mm2 SINE B2 2 194 -1 2 1303 186 43 0 0 chr4 94165841 94165864 -61464256 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1303 1160 75 0 0 chr4 94165864 94166011 -61464109 - B1_Mm SINE Alu 0 147 1 2 1303 186 43 0 0 chr4 94167013 94167036 -61463084 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2 1303 23 78 0 0 chr4 94167534 94167585 -61462535 + AT_rich Low_complexity Low_complexity 1 51 0 2 1303 222 222 0 0 chr4 94167973 94168027 -61462093 + (CAG)n Simple_repeat Simple_repeat 2 55 0 2 1303 1294 69 11 11 chr4 94168749 94168924 -61461196 + B2_Mm2 SINE B2 2 176 -19 2 1303 225 94 0 0 chr4 94168924 94168956 -61461164 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1303 25 31 0 0 chr4 94169073 94169105 -61461015 + AT_rich Low_complexity Low_complexity 1 32 0 2 1303 5993 44 3 12 chr4 94169115 94169868 -61460252 + L1Md_F2 LINE L1 5835 6580 -2 2 1303 243 307 67 38 chr4 94170378 94170483 -61459637 + MTE-int LTR MaLR 862 969 -611 2 1303 472 254 53 0 chr4 94170493 94170607 -61459513 + MTE-int LTR MaLR 1396 1515 -65 2 1303 225 119 0 0 chr4 94170798 94170840 -61459280 + (TCTCTG)n Simple_repeat Simple_repeat 3 44 0 2 1303 656 267 58 20 chr4 94171607 94171868 -61458252 + Lx2B LINE L1 6719 6957 -24 2 1303 1070 69 7 20 chr4 94171870 94172017 -61458103 + B1_Mus1 SINE Alu 4 148 0 2 1303 261 277 30 60 chr4 94173848 94173931 -61456189 + ID4 SINE ID 2 83 -69 2 1303 1160 98 0 6 chr4 94173931 94174105 -61456015 + (GGGAGA)n Simple_repeat Simple_repeat 5 177 0 2 1303 240 277 30 60 chr4 94174105 94174121 -61455999 + BC1_Mm scRNA scRNA 84 98 -54 2 1303 227 190 17 0 chr4 94174197 94174255 -61455865 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 1303 340 0 83 0 chr4 94174473 94174533 -61455587 + (CAAAAA)n Simple_repeat Simple_repeat 1 65 0 2 1303 660 277 19 77 chr4 94174624 94174831 -61455289 + B3A SINE B2 1 195 -3 2 1303 272 226 214 0 chr4 94174861 94174945 -61455175 + PB1D10 SINE Alu 10 111 -6 2 1303 853 331 96 22 chr4 94174964 94175395 -61454725 + Lx8 LINE L1 6843 7316 -157 2 1303 2223 119 3 12 chr4 94176260 94176582 -61453538 - ORR1A2 LTR MaLR -8 319 1 2 1303 545 298 8 22 chr4 94176582 94176716 -61453404 + RSINE1 SINE B4 34 165 0 2 1303 182 314 0 0 chr4 94177270 94177321 -61452799 + L3 LINE CR1 3115 3165 -1324 2 1303 842 255 9 67 chr4 94178186 94178409 -61451711 - B4 SINE B4 0 292 83 2 1303 702 169 46 1 chr4 94178441 94178606 -61451514 - ORR1A3 LTR MaLR -153 176 1 2 1303 10277 129 72 25 chr4 94178606 94179115 -61451005 - ORR1A3-int LTR MaLR 0 1963 1438 2 1303 2256 83 3 33 chr4 94179115 94179451 -61450669 + IAPLTR3 LTR ERVK 1 326 0 2 1303 10277 129 72 25 chr4 94179451 94180640 -61449480 - ORR1A3-int LTR MaLR -526 1437 163 2 1303 575 45 0 11 chr4 94180640 94180731 -61449389 + L1Md_F2 LINE L1 6493 6582 0 2 1303 10277 129 72 25 chr4 94180731 94180906 -61449214 - ORR1A3-int LTR MaLR -1801 162 1 2 1303 2019 127 35 6 chr4 94180906 94181223 -61448897 - ORR1A3 LTR MaLR 0 326 1 2 1303 395 237 52 0 chr4 94181224 94181321 -61448799 + PB1D10 SINE Alu 4 105 -12 2 1303 627 307 51 43 chr4 94181495 94181771 -61448349 + B4A SINE B4 8 285 -7 2 1303 366 61 0 0 chr4 94181776 94181825 -61448295 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1303 308 321 42 76 chr4 94181933 94182051 -61448069 + B1F2 SINE Alu 3 116 -33 2 1303 324 0 0 0 chr4 94182400 94182436 -61447684 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1303 410 298 39 0 chr4 94182669 94182773 -61447347 - PB1D10 SINE Alu -9 108 1 2 1303 284 331 69 41 chr4 94182773 94182808 -61447312 - ID_B1 SINE B4 -27 179 49 2 1303 27 73 0 0 chr4 94182964 94183019 -61447101 + AT_rich Low_complexity Low_complexity 1 55 0 2 1303 844 123 168 0 chr4 94183327 94183482 -61446638 + URR1A DNA MER1_type 46 226 0 2 1303 422 250 0 0 chr4 94183926 94184006 -61446114 - ID4 SINE ID 0 83 4 2 1303 263 282 37 49 chr4 94185939 94186021 -61444099 + ID4 SINE ID 1 81 -2 3 1303 450 248 27 9 chr4 94186600 94186710 -61443410 + PB1D10 SINE Alu 2 113 -4 3 1303 21 0 0 0 chr4 94186710 94186731 -61443389 + AT_rich Low_complexity Low_complexity 1 21 0 3 1303 21 0 0 0 chr4 94189206 94189227 -61440893 + AT_rich Low_complexity Low_complexity 1 21 0 3 1303 334 282 119 30 chr4 94189396 94189699 -61440421 + L1MC4 LINE L1 7563 7892 -150 3 1303 382 263 118 49 chr4 94189731 94189875 -61440245 + RSINE1 SINE B4 12 165 0 3 1303 231 204 0 0 chr4 94189875 94189924 -61440196 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1303 406 263 0 41 chr4 94190309 94190432 -61439688 + PB1D7 SINE Alu 1 118 -2 3 1303 279 0 0 0 chr4 94191156 94191187 -61438933 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1303 681 245 26 0 chr4 94191192 94191343 -61438777 - B3A SINE B2 -42 156 2 3 1303 22 35 0 0 chr4 94191343 94191372 -61438748 + AT_rich Low_complexity Low_complexity 1 29 0 3 1303 327 353 60 0 chr4 94191814 94191930 -61438190 + RSINE1 SINE B4 43 165 0 3 1303 345 221 70 19 chr4 94191951 94192100 -61438020 + L1M4 LINE L1 5107 5263 -883 3 1303 316 345 34 0 chr4 94192100 94192219 -61437901 + PB1 SINE Alu 1 123 -4 3 1303 1203 289 66 9 chr4 94192258 94192593 -61437527 + ORR1E LTR MaLR 4 357 -2 3 1303 9062 91 35 7 chr4 94192617 94193922 -61436198 + Lx2 LINE L1 5656 6997 0 3 1303 352 259 30 28 chr4 94193949 94194150 -61435970 + L1M4 LINE L1 5326 5519 -659 3 1303 194 81 0 26 chr4 94194186 94194224 -61435896 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 3 1303 1023 161 29 0 chr4 94194294 94194468 -61435652 + B2_Mm1t SINE B2 1 179 -14 3 1303 324 85 361 46 chr4 94194481 94194589 -61435531 + B2_Mm2 SINE B2 47 188 -7 3 1303 764 175 20 20 chr4 94194683 94194829 -61435291 + B1_Mur3 SINE Alu 2 147 -2 3 1303 263 404 54 36 chr4 94194872 94195039 -61435081 - MLT1E2 LTR MaLR -134 493 324 3 1303 318 191 105 35 chr4 94195287 94195401 -61434719 + L1ME2 LINE L1 5779 5900 -264 3 1303 244 291 68 23 chr4 94195407 94195495 -61434625 + B2_Mm2 SINE B2 1 92 -103 3 1303 198 0 0 0 chr4 94196266 94196288 -61433832 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1303 729 256 37 42 chr4 94196307 94196579 -61433541 - ORR1E LTR MaLR -123 251 1 3 1303 264 250 88 0 chr4 94196579 94196621 -61433499 - ORR1E-int LTR MaLR -53 1527 1480 3 1303 211 227 44 22 chr4 94196622 94196667 -61433453 - PB1D9 SINE Alu -73 47 2 3 1303 327 297 145 6 chr4 94196868 94197034 -61433086 - MIR SINE MIR 0 262 74 3 1303 225 273 38 25 chr4 94197207 94197286 -61432834 - PB1D10 SINE Alu 0 117 38 3 1303 536 268 293 22 chr4 94197622 94197946 -61432174 + MLT1D LTR MaLR 25 436 -69 3 1303 237 275 33 99 chr4 94197954 94198075 -61432045 + PB1D10 SINE Alu 2 114 -3 3 1303 1849 201 41 44 chr4 94198768 94199180 -61430940 - MTD LTR MaLR -8 411 1 3 1303 22 35 0 0 chr4 94199561 94199590 -61430530 + AT_rich Low_complexity Low_complexity 1 29 0 3 1303 1381 70 32 0 chr4 94199614 94199801 -61430319 + B2_Mm2 SINE B2 2 194 -1 3 1303 288 0 0 0 chr4 94200000 94200032 -61430088 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1303 312 324 59 52 chr4 94200515 94200668 -61429452 + HAL1-3A_ME LINE L1 2277 2430 -428 3 1303 1048 229 111 40 chr4 94200675 94201026 -61429094 + MTEb LTR MaLR 1 376 -3 3 1303 642 272 7 33 chr4 94201148 94201300 -61428820 - RSINE1 SINE B4 -10 155 8 3 1303 431 342 32 19 chr4 94201328 94201486 -61428634 - RSINE1 SINE B4 -2 163 4 3 1303 1204 54 0 0 chr4 94201517 94201664 -61428456 + B1_Mus2 SINE Alu 1 147 0 3 1303 180 0 0 0 chr4 94201664 94201684 -61428436 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1303 455 277 8 43 chr4 94201848 94201965 -61428155 + RSINE1 SINE B4 43 155 -10 3 1303 312 348 17 0 chr4 94202629 94202744 -61427376 - PB1D10 SINE Alu 0 117 1 3 1303 1140 197 203 15 chr4 94202744 94203069 -61427051 - MTD LTR MaLR -1 418 33 3 1303 560 283 31 25 chr4 94203200 94203396 -61426724 + B3A SINE B2 2 198 0 3 1303 1323 88 0 40 chr4 94203445 94203645 -61426475 + B2_Mm2 SINE B2 3 194 -1 3 1303 440 324 26 33 chr4 94204339 94204492 -61425628 + RSINE1 SINE B4 14 165 0 3 1303 225 340 65 9 chr4 94204584 94204691 -61425429 + PB1D10 SINE Alu 3 115 -2 3 1303 495 194 19 19 chr4 94204791 94204896 -61425224 + B3A SINE B2 1 105 -93 3 1303 615 139 20 0 chr4 94204893 94204994 -61425126 + ORR1B2-int LTR MaLR 1407 1509 0 3 1303 1943 183 31 6 chr4 94204994 94205352 -61424768 + ORR1B2 LTR MaLR 1 367 0 3 1303 290 356 118 6 chr4 94205417 94205595 -61424525 - MLT1D LTR MaLR 0 505 308 3 1303 903 44 0 0 chr4 94206222 94206336 -61423784 + B1_Mus1 SINE Alu 35 148 0 3 1303 347 202 38 0 chr4 94206353 94206432 -61423688 + B1_Mus2 SINE Alu 1 82 -65 3 1303 345 350 24 0 chr4 94206626 94206749 -61423371 + ID_B1 SINE B4 91 216 -8 3 1303 1365 65 0 41 chr4 94206759 94206953 -61423167 + L1_Mus2 LINE L1 6379 6564 -2 3 1303 634 202 8 0 chr4 94206982 94207111 -61423009 - Tigger5 DNA MER2_type -64 2342 2213 3 1303 231 274 63 79 chr4 94207132 94207223 -61422897 - L1MA6 LINE L1 -34 6266 6174 3 1303 788 214 53 32 chr4 94207223 94207411 -61422709 - B3A SINE B2 -5 193 2 3 1303 231 274 63 79 chr4 94207411 94207446 -61422674 - L1MA6 LINE L1 -127 6173 6142 3 1303 651 180 107 0 chr4 94207446 94207568 -61422552 + B1_Mus1 SINE Alu 1 135 -13 3 1303 1027 194 57 88 chr4 94207642 94207941 -61422179 + ORR1C2 LTR MaLR 1 342 -42 3 1303 1185 88 35 0 chr4 94207941 94208112 -61422008 + B2_Mm1t SINE B2 1 177 -16 3 1303 304 162 21 27 chr4 94208112 94208254 -61421866 + B2_Mm2 SINE B2 21 195 0 3 1303 379 111 0 0 chr4 94208255 94208309 -61421811 + ORR1C2 LTR MaLR 331 384 0 3 1303 382 236 0 0 chr4 94208311 94208400 -61421720 - L1MA6 LINE L1 -210 6090 6002 3 1303 266 225 27 53 chr4 94208400 94208475 -61421645 - Tigger5 DNA MER2_type -186 2220 2148 3 1303 314 279 101 107 chr4 94208597 94208892 -61421228 - RSINE1 SINE B4 -18 274 10 3 1303 718 254 39 137 chr4 94209062 94209432 -61420688 + L1MB1 LINE L1 5485 5805 -384 3 1303 267 79 0 0 chr4 94209432 94209470 -61420650 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 1303 718 254 39 137 chr4 94209470 94209565 -61420555 + L1MB1 LINE L1 5806 5904 -285 3 1303 481 218 67 112 chr4 94209570 94209704 -61420416 + B1_Mur2 SINE Alu 1 128 -21 3 1303 649 223 142 11 chr4 94209824 94210014 -61420106 + B3 SINE B2 2 216 0 3 1303 1324 101 16 11 chr4 94210034 94210224 -61419896 + B2_Mm2 SINE B2 1 191 -4 3 1303 244 236 32 11 chr4 94210265 94210359 -61419761 + L1MA9 LINE L1 5999 6094 -218 3 1303 335 333 57 47 chr4 94210379 94210590 -61419530 - L1M5 LINE L1 -2329 3817 3605 3 1303 525 327 18 36 chr4 94212398 94212563 -61417557 - RSINE1 SINE B4 0 165 4 3 1303 375 323 24 8 chr4 94213076 94213201 -61416919 + PB1 SINE Alu 1 127 0 3 1303 480 247 79 70 chr4 94213213 94213432 -61416688 + B3A SINE B2 2 215 -1 3 1303 520 268 16 22 chr4 94214017 94214200 -61415920 - B3 SINE B2 0 216 1 3 1303 1195 84 66 0 chr4 94214339 94214505 -61415615 + B2_Mm2 SINE B2 5 181 -14 3 1303 308 246 29 0 chr4 94214627 94214696 -61415424 + ID4_ SINE ID 2 72 -11 3 1303 1150 75 0 7 chr4 94214886 94215034 -61415086 - B1_Mus2 SINE Alu 0 147 1 3 1303 537 16 0 0 chr4 94215388 94215450 -61414670 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1303 270 81 0 0 chr4 94215458 94215495 -61414625 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1303 792 247 13 0 chr4 94215523 94215677 -61414443 + B3A SINE B2 1 156 -42 3 1303 192 77 0 0 chr4 94215691 94215717 -61414403 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1303 26 0 0 0 chr4 94215753 94215779 -61414341 + AT_rich Low_complexity Low_complexity 1 26 0 3 1303 378 0 0 0 chr4 94216035 94216077 -61414043 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1303 281 305 89 41 chr4 94216095 94216118 -61414002 - RSINE1 SINE B4 -35 130 2 3 1303 547 220 0 0 chr4 94216118 94216218 -61413902 - B3A SINE B2 -98 100 1 3 1303 388 220 44 0 chr4 94216373 94216464 -61413656 - B3A SINE B2 -2 196 102 3 1303 28 29 0 0 chr4 94216831 94216866 -61413254 + AT_rich Low_complexity Low_complexity 1 35 0 3 1303 580 290 0 0 chr4 94219156 94219287 -61410833 + B1_Mur1 SINE Alu 6 136 -13 3 1303 195 42 0 0 chr4 94219288 94219312 -61410808 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1303 294 239 10 61 chr4 94219440 94219538 -61410582 + PB1D9 SINE Alu 28 120 0 3 1303 353 222 0 0 chr4 94219830 94219893 -61410227 + ID2 SINE ID 2 64 -19 3 1303 241 151 57 0 chr4 94219895 94219948 -61410172 + GA-rich Low_complexity Low_complexity 3 58 0 3 1303 746 118 0 52 chr4 94220184 94220300 -61409820 + B1_Mus1 SINE Alu 2 111 -37 3 1303 566 185 282 12 chr4 94220328 94220498 -61409622 + B3 SINE B2 1 216 0 3 1303 1121 88 0 0 chr4 94220524 94220672 -61409448 + B1_Mus1 SINE Alu 1 148 0 3 1303 864 168 249 0 chr4 94220685 94220858 -61409262 + B3 SINE B2 1 216 0 3 1303 307 292 130 24 chr4 94220923 94221046 -61409074 + RSINE1 SINE B4 4 139 -26 3 1303 1046 162 63 14 chr4 94221229 94221436 -61408684 + URR1B DNA MER1_type 1 217 -8 3 1303 390 221 135 63 chr4 94221653 94221764 -61408356 + PB1D9 SINE Alu 1 119 -1 3 1303 391 229 0 103 chr4 94221854 94221971 -61408149 + B1F2 SINE Alu 14 118 -31 3 1303 220 236 0 40 chr4 94223225 94223300 -61406820 + C-rich Low_complexity Low_complexity 4 75 0 4 1303 225 0 0 0 chr4 94223815 94223840 -61406280 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1303 1094 88 7 0 chr4 94224008 94224155 -61405965 + B1_Mus1 SINE Alu 1 148 0 4 1303 886 171 54 24 chr4 94224298 94224466 -61405654 - RMER5 LTR ERV1 -345 189 17 4 1303 242 29 29 0 chr4 94224466 94224501 -61405619 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1303 256 268 42 0 chr4 94224571 94224642 -61405478 - ID_B1 SINE B4 -5 219 146 4 1303 999 240 5 5 chr4 94224692 94224901 -61405219 - B3 SINE B2 -6 210 2 4 1303 532 293 16 0 chr4 94224905 94225028 -61405092 - ID_B1 SINE B4 -71 153 29 4 1303 250 233 85 43 chr4 94225221 94225315 -61404805 + B3A SINE B2 119 216 0 4 1303 1110 41 0 52 chr4 94225320 94225474 -61404646 + B1_Mus2 SINE Alu 2 147 0 4 1303 1048 96 90 6 chr4 94225597 94225751 -61404369 + B2_Mm2 SINE B2 2 162 -33 4 1303 180 0 0 0 chr4 94225751 94225771 -61404349 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1303 1048 96 90 6 chr4 94225771 94225794 -61404326 + B2_Mm2 SINE B2 163 193 -2 4 1303 529 248 117 18 chr4 94226436 94226658 -61403462 + RMER20B LTR ERVK 176 419 -208 4 1303 337 366 24 8 chr4 94226779 94226903 -61403217 + B4A SINE B4 99 224 -68 4 1303 552 274 115 21 chr4 94227121 94227356 -61402764 - RMER5 LTR ERV1 0 534 278 4 1303 251 147 12 171 chr4 94227351 94227365 -61402755 + ID_B1 SINE B4 152 219 -4 4 1303 330 138 0 134 chr4 94227365 94227432 -61402688 + B1_Mur4 SINE Alu 88 145 -5 4 1303 782 172 60 0 chr4 94228102 94228236 -61401884 + B1_Mur4 SINE Alu 1 142 -8 4 1303 281 0 39 39 chr4 94228256 94228307 -61401813 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1303 350 147 37 49 chr4 94228485 94228649 -61401471 + (TATG)n Simple_repeat Simple_repeat 1 162 0 4 1303 217 133 0 0 chr4 94228714 94228744 -61401376 + B1F1 SINE Alu 68 97 -52 4 1303 272 357 97 18 chr4 94228872 94228986 -61401134 + B1F1 SINE Alu 3 125 -24 4 1303 1108 75 7 0 chr4 94229352 94229498 -61400622 - B1_Mus1 SINE Alu 0 148 2 4 1303 1986 180 34 15 chr4 94230131 94230542 -61399578 - MTD LTR MaLR 0 419 1 4 1303 216 86 0 0 chr4 94230796 94230831 -61399289 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1303 1236 48 0 0 chr4 94230838 94230985 -61399135 - B1_Mm SINE Alu 0 147 1 4 1303 1625 271 122 7 chr4 94231228 94231804 -61398316 - Lx8 LINE L1 -306 7167 6526 4 1303 286 254 113 113 chr4 94232203 94232327 -61397793 + Tigger5 DNA MER2_type 40 163 -2243 4 1303 465 253 93 35 chr4 94232666 94232838 -61397282 - B3A SINE B2 -16 182 1 4 1303 786 210 46 77 chr4 94232902 94233098 -61397022 - B3 SINE B2 -26 190 1 4 1303 678 165 105 0 chr4 94234719 94234852 -61395268 + B1_Mm SINE Alu 1 147 0 4 1303 216 0 0 0 chr4 94235981 94236005 -61394115 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1303 2213 193 47 25 chr4 94236742 94237258 -61392862 + RLTR11A2 LTR ERVK 1 527 0 4 1303 970 221 10 0 chr4 94237781 94237985 -61392135 + B3 SINE B2 3 208 -8 4 1303 403 239 182 35 chr4 94238828 94238971 -61391149 - RSINE1 SINE B4 0 165 2 4 1303 23 0 0 0 chr4 94239181 94239204 -61390916 + AT_rich Low_complexity Low_complexity 1 23 0 4 1303 368 212 121 0 chr4 94239539 94239638 -61390482 - RSINE1 SINE B4 -35 130 20 4 1303 778 111 26 0 chr4 94239695 94239812 -61390308 - PB1D9 SINE Alu 0 120 1 4 1303 271 227 243 6 chr4 94239835 94240012 -61390108 - Lx7 LINE L1 -40 7656 7438 4 1303 537 272 43 21 chr4 94240364 94240552 -61389568 + B2_Mm2 SINE B2 1 192 -3 4 1304 1115 77 112 0 chr4 94241051 94241221 -61388899 + B2_Mm1t SINE B2 2 190 -3 4 1304 481 292 8 15 chr4 94241390 94241522 -61388598 + B1_Mur2 SINE Alu 1 131 -18 4 1304 262 163 0 0 chr4 94241627 94241670 -61388450 + B1_Mus1 SINE Alu 10 52 -96 4 1304 245 343 0 0 chr4 94241719 94241789 -61388331 - ID4 SINE ID 0 83 14 4 1304 930 204 18 75 chr4 94242083 94242311 -61387809 + B3 SINE B2 1 215 -1 4 1304 198 0 0 0 chr4 94243070 94243092 -61387028 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1304 1090 60 143 6 chr4 94243772 94243940 -61386180 - B2_Mm2 SINE B2 -4 191 1 4 1304 190 286 18 0 chr4 94244473 94244529 -61385591 - MIR SINE MIR -145 117 61 4 1304 392 264 91 0 chr4 94244529 94244560 -61385560 - PB1 SINE Alu -6 121 91 4 1304 903 95 0 26 chr4 94244560 94244712 -61385408 + (TTTC)n Simple_repeat Simple_repeat 4 151 0 4 1304 569 90 0 0 chr4 94244712 94244790 -61385330 - B1_Mus2 SINE Alu -68 79 2 4 1304 673 218 0 0 chr4 94245361 94245494 -61384626 + Lx7 LINE L1 7203 7335 -361 4 1304 848 259 42 0 chr4 94245526 94245715 -61384405 - B3 SINE B2 -19 197 1 4 1304 198 103 0 0 chr4 94246125 94246154 -61383966 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1304 23 33 0 0 chr4 94246362 94246392 -61383728 + AT_rich Low_complexity Low_complexity 1 30 0 4 1304 1729 135 59 101 chr4 94246521 94246592 -61383528 - ORR1A2 LTR MaLR -4 323 270 4 1304 987 114 0 0 chr4 94246592 94246732 -61383388 - B1_Mus1 SINE Alu -7 141 2 4 1304 1729 135 59 101 chr4 94246732 94246997 -61383123 - ORR1A2 LTR MaLR -58 269 1 4 1304 850 82 33 20 chr4 94247175 94247325 -61382795 + RMER17B LTR ERVK 312 463 -495 4 1304 1737 169 106 6 chr4 94247667 94248007 -61382113 + ORR1D1 LTR MaLR 1 374 0 4 1304 455 270 36 80 chr4 94248032 94248169 -61381951 + RSINE1 SINE B4 1 131 -34 4 1304 21 36 0 0 chr4 94248243 94248271 -61381849 + AT_rich Low_complexity Low_complexity 1 28 0 4 1304 566 263 83 29 chr4 94248279 94248483 -61381637 - B3 SINE B2 0 216 2 4 1304 811 276 10 48 chr4 94248500 94248706 -61381414 - B3A SINE B2 0 198 1 4 1304 640 168 10 0 chr4 94248746 94248847 -61381273 - B3 SINE B2 -5 211 110 4 1304 276 192 19 0 chr4 94248834 94248886 -61381234 - B2_Mm2 SINE B2 -138 57 5 4 1304 39 74 0 0 chr4 94249933 94250014 -61380106 + AT_rich Low_complexity Low_complexity 1 81 0 4 1304 258 299 84 0 chr4 94250984 94251091 -61379029 - PB1D10 SINE Alu 0 117 2 4 1304 231 209 103 15 chr4 94251197 94251265 -61378855 + PB1D10 SINE Alu 44 117 0 4 1304 1143 74 0 0 chr4 94252167 94252315 -61377805 - B1_Mus1 SINE Alu 0 148 1 4 1304 257 361 0 0 chr4 94254421 94254504 -61375616 + MIR SINE MIR 8 90 -172 4 1304 576 234 41 31 chr4 94254543 94254703 -61375417 - B3 SINE B2 0 216 58 4 1304 805 275 21 47 chr4 94254873 94255106 -61375014 + B4 SINE B4 1 227 -65 4 1304 476 313 30 8 chr4 94255115 94255247 -61374873 + RSINE1 SINE B4 12 146 -19 4 1304 348 303 0 44 chr4 94255613 94255727 -61374393 + ID_B1 SINE B4 86 194 -30 4 1304 351 320 2 32 chr4 94255727 94255741 -61374379 + PB1D10 SINE Alu 5 128 -19 4 1304 327 253 38 0 chr4 94255824 94255903 -61374217 + MER58B DNA MER1_type 251 332 -9 4 1304 311 337 46 58 chr4 94256273 94256446 -61373674 + B2_Mm2 SINE B2 1 171 -24 4 1304 1070 71 84 0 chr4 94257400 94257555 -61372565 + B2_Mm2 SINE B2 1 168 -27 4 1304 189 0 0 0 chr4 94257579 94257600 -61372520 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1304 336 318 193 25 chr4 94257772 94258208 -61371912 + L1M4c LINE L1 668 1176 -5832 4 1304 299 288 21 21 chr4 94258317 94258459 -61371661 + L1M4c LINE L1 1163 1304 -5704 4 1304 316 293 0 75 chr4 94258464 94258571 -61371549 + L1M4c LINE L1 1444 1542 -5466 4 1304 371 277 52 35 chr4 94258645 94258761 -61371359 + RSINE1 SINE B4 46 163 -2 4 1304 845 264 62 39 chr4 94258857 94259113 -61371007 + B4A SINE B4 24 285 -7 4 1304 230 356 0 52 chr4 94259173 94259250 -61370870 + tRNA-Ala-GCA tRNA tRNA 1 73 -2 4 1304 328 236 39 6 chr4 94259317 94259472 -61370648 + L1M4c LINE L1 2242 2396 -4938 4 1304 217 234 88 59 chr4 94259537 94259605 -61370515 + B1F SINE Alu 14 83 -66 4 1304 276 287 33 33 chr4 94259608 94259698 -61370422 + RSINE1 SINE B4 25 114 -51 4 1304 318 26 0 0 chr4 94259698 94259737 -61370383 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1304 590 245 83 23 chr4 94259788 94260047 -61370073 + L1M4c LINE L1 2997 3271 -3735 4 1304 22 0 0 0 chr4 94260388 94260410 -61369710 + AT_rich Low_complexity Low_complexity 1 22 0 4 1304 300 238 168 5 chr4 94260499 94260702 -61369418 + L1MB3 LINE L1 5591 5826 -345 4 1304 371 193 45 0 chr4 94260711 94260799 -61369321 + L1M4c LINE L1 2379 2470 -3914 4 1304 647 240 133 30 chr4 94260822 94261093 -61369027 + L1MB3 LINE L1 5824 6122 -61 4 1304 426 305 63 63 chr4 94261123 94261298 -61368822 + B4A SINE B4 2 176 -116 4 1304 589 193 56 130 chr4 94261356 94261517 -61368603 + ORR1D1 LTR MaLR 1 149 -225 4 1304 210 71 0 0 chr4 94261543 94261571 -61368549 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1304 351 111 0 36 chr4 94261591 94261647 -61368473 - B2_Mm2 SINE B2 -95 100 47 4 1304 801 106 35 251 chr4 94261706 94261933 -61368187 - B2_Mm1t SINE B2 -14 179 2 4 1304 715 225 48 43 chr4 94261945 94262131 -61367989 + ORR1D1 LTR MaLR 166 352 -22 4 1304 265 189 0 39 chr4 94262712 94262789 -61367331 + CT-rich Low_complexity Low_complexity 3 76 0 4 1304 578 173 0 19 chr4 94262796 94262902 -61367218 - B1_Mur4 SINE Alu -6 144 41 4 1304 396 0 0 0 chr4 94262905 94262949 -61367171 - HAL1-3A_ME LINE L1 -839 2019 1976 4 1304 402 39 0 0 chr4 94262952 94263004 -61367116 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1304 241 125 0 0 chr4 94263004 94263036 -61367084 - PB1D9 SINE Alu -83 37 6 4 1304 7313 56 16 10 chr4 94263084 94264098 -61366022 - L1Md_F2 LINE L1 0 6582 5587 4 1304 226 335 66 20 chr4 94264767 94264919 -61365201 + HAL1 LINE L1 727 885 -1622 4 1304 410 321 76 55 chr4 94265296 94265586 -61364534 + HAL1 LINE L1 1483 1778 -729 4 1304 1375 61 17 6 chr4 94265724 94265905 -61364215 + B2_Mm2 SINE B2 1 183 -12 5 1304 21 71 0 0 chr4 94266974 94267016 -61363104 + AT_rich Low_complexity Low_complexity 1 42 0 5 1304 318 309 94 52 chr4 94267150 94267362 -61362758 + HAL1 LINE L1 2248 2468 -39 4 1304 1301 95 16 5 chr4 94268192 94268382 -61361738 - B2_Mm2 SINE B2 -3 192 1 5 1304 25 0 0 0 chr4 94268867 94268892 -61361228 + AT_rich Low_complexity Low_complexity 1 25 0 5 1304 231 61 0 0 chr4 94268906 94268939 -61361181 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 5 1304 225 314 27 45 chr4 94269272 94269382 -61360738 - MIR SINE MIR -81 127 20 5 1304 312 277 106 0 chr4 94270533 94270627 -61359493 - PB1D7 SINE Alu -1 119 16 5 1304 1151 132 31 11 chr4 94270918 94271109 -61359011 - B2_Mm2 SINE B2 0 195 1 5 1304 347 287 73 9 chr4 94271289 94271398 -61358722 + B1F SINE Alu 31 146 -3 5 1304 218 165 38 12 chr4 94271465 94271545 -61358575 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1304 229 262 12 0 chr4 94271733 94271813 -61358307 + T-rich Low_complexity Low_complexity 6 86 0 5 1304 494 319 0 47 chr4 94271816 94271987 -61358133 - RSINE1 SINE B4 0 165 3 5 1304 349 250 101 22 chr4 94272408 94272579 -61357541 - LTR48B LTR ERV1 -477 310 107 5 1304 522 288 12 124 chr4 94272747 94272818 -61357302 - Tigger5 DNA MER2_type -1 2405 2347 5 1304 472 261 35 98 chr4 94272818 94272941 -61357179 + RSINE1 SINE B4 2 121 -44 5 1304 450 0 0 0 chr4 94272941 94272991 -61357129 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1304 472 261 35 98 chr4 94272991 94273041 -61357079 + RSINE1 SINE B4 122 164 -1 5 1304 528 270 13 33 chr4 94273041 94273211 -61356909 - Tigger5 DNA MER2_type -60 2346 2191 5 1304 325 333 21 170 chr4 94273251 94273323 -61356797 - Tigger5 DNA MER2_type -2203 203 138 5 1304 765 128 17 8 chr4 94273323 94273441 -61356679 + PB1D9 SINE Alu 2 120 0 5 1304 325 333 21 170 chr4 94273441 94273603 -61356517 - Tigger5 DNA MER2_type -2269 137 4 5 1304 1367 200 75 3 chr4 94273979 94274350 -61355770 + Lx9 LINE L1 7239 7636 -8 5 1304 235 291 12 37 chr4 94275630 94275712 -61354408 - MER34A LTR ERV1 0 571 492 5 1304 421 220 220 0 chr4 94275709 94275827 -61354293 + ID_B1 SINE B4 80 223 -1 5 1304 1154 64 0 0 chr4 94275892 94276032 -61354088 + B1_Mus1 SINE Alu 1 140 -8 5 1304 3317 174 156 7 chr4 94276373 94277087 -61353033 + RLTR25B LTR ERVK 208 1027 -1 5 1304 2336 224 12 22 chr4 94277087 94277597 -61352523 + RLTR18 LTR ERVK 112 616 0 5 1304 522 0 0 0 chr4 94277649 94277707 -61352413 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1304 1008 59 73 0 chr4 94277862 94277998 -61352122 - B1_Mus2 SINE Alu -1 146 1 5 1304 856 203 70 35 chr4 94277998 94278228 -61351892 - RCHARR1 DNA MER1_type -312 662 425 5 1304 1407 50 44 0 chr4 94278328 94278508 -61351612 - B2_Mm2 SINE B2 -6 189 2 5 1304 1145 107 45 0 chr4 94278635 94278812 -61351308 + B2_Mm1t SINE B2 3 187 -6 5 1304 3322 135 53 11 chr4 94278903 94279464 -61350656 - RMER4B LTR ERVK 0 585 1 5 1304 1115 244 127 18 chr4 94279509 94279839 -61350281 - RCHARR1 DNA MER1_type -606 368 3 5 1304 186 43 0 0 chr4 94279921 94279944 -61350176 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1304 396 0 0 0 chr4 94279995 94280039 -61350081 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1304 182 316 18 0 chr4 94280076 94280133 -61349987 - L2c LINE L2 -58 3329 3272 5 1304 427 229 134 22 chr4 94280336 94280470 -61349650 + B1_Mur2 SINE Alu 1 149 0 5 1304 1922 25 21 4 chr4 94282473 94282712 -61347408 - L1Md_F3 LINE L1 0 6584 6342 5 1304 26 0 0 0 chr4 94282715 94282741 -61347379 + AT_rich Low_complexity Low_complexity 1 26 0 5 1304 225 330 112 36 chr4 94283383 94283606 -61346514 - L2c LINE L2 -925 2494 2255 5 1304 437 306 20 34 chr4 94284299 94284448 -61345672 - RSINE1 SINE B4 -17 148 2 5 1304 361 35 34 17 chr4 94285477 94285536 -61344584 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 1304 1131 38 0 0 chr4 94285536 94285669 -61344451 - B1_Mm SINE Alu -13 134 2 5 1304 772 167 0 0 chr4 94285671 94285797 -61344323 + B1_Mus1 SINE Alu 16 141 -7 5 1304 234 0 0 0 chr4 94285798 94285824 -61344296 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1304 228 35 0 0 chr4 94286031 94286060 -61344060 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1304 393 194 86 0 chr4 94286377 94286470 -61343650 + B1F SINE Alu 35 135 -14 5 1304 340 169 0 25 chr4 94286504 94286583 -61343537 + GA-rich Low_complexity Low_complexity 4 80 0 5 1304 887 68 0 15 chr4 94287526 94287661 -61342459 - Lx LINE L1 -6 6648 6516 5 1304 28 0 0 0 chr4 94287677 94287705 -61342415 + AT_rich Low_complexity Low_complexity 1 28 0 5 1304 26 0 0 0 chr4 94287794 94287820 -61342300 + AT_rich Low_complexity Low_complexity 1 26 0 5 1304 300 351 61 0 chr4 94288069 94288200 -61341920 - RSINE1 SINE B4 -11 154 16 5 1304 1210 14 14 14 chr4 94288221 94288368 -61341752 + B1_Mm SINE Alu 1 147 0 5 1304 230 182 23 0 chr4 94288386 94288430 -61341690 - PB1D10 SINE Alu -7 110 66 5 1304 1094 88 0 7 chr4 94288775 94288923 -61341197 - B1_Mus1 SINE Alu 0 148 2 5 1304 195 42 0 0 chr4 94289008 94289032 -61341088 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1304 303 317 47 47 chr4 94289176 94289305 -61340815 + RSINE1 SINE B4 33 161 -4 5 1304 528 325 36 86 chr4 94289418 94289640 -61340480 - ID_B1 SINE B4 -8 216 6 5 1304 493 310 39 24 chr4 94289782 94289987 -61340133 + MER2 DNA MER2_type 138 345 0 5 1304 33 0 0 0 chr4 94289987 94290020 -61340100 + AT_rich Low_complexity Low_complexity 1 33 0 5 1304 621 265 36 7 chr4 94290078 94290215 -61339905 - RSINE1 SINE B4 -16 149 9 5 1304 887 196 5 89 chr4 94290562 94290775 -61339345 - B3A SINE B2 -2 196 2 5 1304 31 0 0 0 chr4 94290796 94290827 -61339293 + AT_rich Low_complexity Low_complexity 1 31 0 5 1304 2371 107 49 6 chr4 94290827 94291193 -61338927 - Lx4A LINE L1 0 7058 6677 5 1304 1155 289 7 14 chr4 94291701 94291985 -61338135 - B4 SINE B4 -6 286 5 5 1304 642 273 94 169 chr4 94292035 94292388 -61337732 - MLT1A0 LTR MaLR 0 408 89 5 1304 741 210 0 0 chr4 94292388 94292526 -61337594 - B1_Mur2 SINE Alu -10 139 2 5 1304 609 273 94 169 chr4 94292526 94292609 -61337511 - MLT1A0 LTR MaLR -320 88 5 5 1304 658 211 60 0 chr4 94292827 94292960 -61337160 - B1_Mur2 SINE Alu -8 141 1 5 1304 784 242 0 24 chr4 94293011 94293180 -61336940 - B3 SINE B2 -3 213 49 5 1304 618 241 7 14 chr4 94293299 94293442 -61336678 - B1F2 SINE Alu -6 143 2 5 1304 1210 119 16 16 chr4 94294077 94294265 -61335855 + B2_Mm2 SINE B2 1 188 -7 5 1304 35 54 0 0 chr4 94294415 94294471 -61335649 + AT_rich Low_complexity Low_complexity 1 56 0 5 1304 368 328 104 7 chr4 94294473 94294608 -61335512 - RSINE1 SINE B4 -8 157 10 5 1304 303 28 0 0 chr4 94295072 94295108 -61335012 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1304 1018 110 0 20 chr4 94295108 94295257 -61334863 - B1_Mus2 SINE Alu 0 147 2 5 1304 298 320 53 37 chr4 94295360 94295393 -61334727 - B2_Mm2 SINE B2 0 195 161 5 1304 224 30 30 0 chr4 94295393 94295426 -61334694 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1304 478 293 91 39 chr4 94295426 94295580 -61334540 - B3A SINE B2 -33 165 5 5 1304 11285 78 1 25 chr4 94295635 94296947 -61333173 + L1_Mus1 LINE L1 4351 5643 -240 5 1304 1167 30 0 0 chr4 94296947 94297082 -61333038 + B1_Mm SINE Alu 3 137 -10 5 1304 11285 74 2 65 chr4 94297082 94298033 -61332087 + L1_Mus1 LINE L1 5644 6547 -20 5 1304 997 83 14 20 chr4 94298256 94298404 -61331716 - B1_Mus2 SINE Alu 0 147 1 5 1304 578 187 44 9 chr4 94298566 94298679 -61331441 + B1_Mur2 SINE Alu 23 139 -10 5 1304 207 0 0 0 chr4 94298680 94298703 -61331417 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1304 182 164 0 18 chr4 94298907 94298963 -61331157 + T-rich Low_complexity Low_complexity 2 56 0 5 1304 4958 108 130 38 chr4 94299579 94300499 -61329621 - Lx3B LINE L1 0 6973 5969 5 1304 1328 65 16 27 chr4 94300573 94300761 -61329359 - B2_Mm2 SINE B2 -8 187 2 5 1304 844 246 34 6 chr4 94300857 94301033 -61329087 - B3 SINE B2 -30 186 6 5 1304 606 211 13 107 chr4 94301272 94301421 -61328699 - B1_Mur3 SINE Alu -2 147 13 5 1304 801 94 132 8 chr4 94301421 94301550 -61328570 + B1_Mus2 SINE Alu 3 147 0 5 1304 270 0 0 0 chr4 94301550 94301580 -61328540 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1304 29 28 0 0 chr4 94301681 94301717 -61328403 + AT_rich Low_complexity Low_complexity 1 36 0 5 1304 441 0 0 0 chr4 94301799 94301848 -61328272 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 5 1304 258 95 0 0 chr4 94301933 94301975 -61328145 + (TATG)n Simple_repeat Simple_repeat 2 43 0 5 1304 1153 121 6 0 chr4 94301975 94302141 -61327979 - B2_Mm2 SINE B2 -27 168 2 5 1304 820 196 201 0 chr4 94302647 94302826 -61327294 - B3 SINE B2 0 216 2 5 1304 267 259 0 112 chr4 94302847 94302934 -61327186 - B1_Mus1 SINE Alu -39 81 8 5 1304 217 263 53 0 chr4 94302886 94302943 -61327177 - B4A SINE B4 -153 139 80 5 1304 361 0 41 0 chr4 94303830 94303879 -61326241 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1304 868 271 30 0 chr4 94306174 94306377 -61323743 + B3 SINE B2 2 210 -6 5 1304 414 0 0 0 chr4 94306504 94306556 -61323564 + L1Md_F2 LINE L1 6521 6572 -10 5 1304 568 272 0 0 chr4 94306717 94306831 -61323289 - PB1D9 SINE Alu -5 115 2 5 1304 234 0 0 0 chr4 94306932 94306958 -61323162 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1304 401 284 0 44 chr4 94307953 94308067 -61322053 + PB1D10 SINE Alu 9 117 0 5 1304 725 188 21 35 chr4 94308240 94308383 -61321737 - B1_Mur4 SINE Alu -9 141 1 5 1304 371 275 120 11 chr4 94308414 94308506 -61321614 + B1_Mur2 SINE Alu 9 110 -39 5 1304 263 369 39 0 chr4 94308690 94308702 -61321418 - PB1D10 SINE Alu -10 107 51 5 1304 307 277 48 0 chr4 94308702 94308785 -61321335 - ID_B1 SINE B4 -48 176 90 6 1304 207 0 0 0 chr4 94309086 94309109 -61321011 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1304 21 0 0 0 chr4 94309171 94309192 -61320928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1304 443 112 12 0 chr4 94309192 94309272 -61320848 - L1Md_F2 LINE L1 0 6582 6502 6 1304 758 251 23 32 chr4 94309281 94309499 -61320621 - B3 SINE B2 0 216 1 6 1304 23 54 0 0 chr4 94309597 94309634 -61320486 + AT_rich Low_complexity Low_complexity 1 37 0 6 1304 318 308 24 42 chr4 94309695 94309861 -61320259 - RSINE1 SINE B4 0 165 3 6 1304 1156 70 6 25 chr4 94310292 94310453 -61319667 - B2_Mm2 SINE B2 -35 160 3 6 1304 401 328 71 86 chr4 94310584 94311051 -61319069 - HAL1 LINE L1 -186 2321 1862 6 1304 369 109 0 0 chr4 94311151 94311206 -61318914 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1304 821 78 0 0 chr4 94311206 94311321 -61318799 - B1_Mus2 SINE Alu 0 147 33 6 1304 6927 92 18 21 chr4 94311449 94312478 -61317642 - Lx3_Mus LINE L1 0 7009 5985 6 1304 8938 70 25 43 chr4 94312478 94313651 -61316469 + Lx3_Mus LINE L1 4620 5787 -99 6 1304 1128 68 0 20 chr4 94313651 94313801 -61316319 + B1_Mus2 SINE Alu 1 147 0 6 1304 8938 74 38 63 chr4 94313801 94314060 -61316060 + Lx3_Mus LINE L1 5785 6027 -982 6 1304 252 306 70 20 chr4 94314263 94314363 -61315757 - HAL1 LINE L1 -2384 123 19 6 1304 207 189 0 0 chr4 94314872 94314909 -61315211 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 6 1304 422 152 163 0 chr4 94315231 94315323 -61314797 + B1_Mur2 SINE Alu 1 107 -42 6 1304 33 66 0 0 chr4 94316146 94316207 -61313913 + AT_rich Low_complexity Low_complexity 1 61 0 6 1304 466 67 36 108 chr4 94316269 94316436 -61313684 - RMER17C LTR ERVK -136 274 120 6 1304 32 43 0 0 chr4 94316482 94316528 -61313592 + AT_rich Low_complexity Low_complexity 1 46 0 6 1304 3170 68 0 12 chr4 94317058 94317463 -61312657 - MTB LTR MaLR 0 400 1 6 1304 845 138 0 19 chr4 94317899 94318054 -61312066 + A-rich Low_complexity Low_complexity 4 155 0 6 1304 703 238 7 0 chr4 94318351 94318498 -61311622 - B1_Mur1 SINE Alu 0 149 2 6 1304 180 0 0 0 chr4 94318514 94318534 -61311586 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1304 913 244 34 0 chr4 94318728 94318937 -61311183 + B3 SINE B2 1 216 0 6 1304 370 324 18 0 chr4 94319047 94319158 -61310962 - Lx7 LINE L1 -1994 5702 5590 6 1304 462 226 118 0 chr4 94320042 94320144 -61309976 - B1_Mur2 SINE Alu -2 147 34 6 1304 1606 31 0 20 chr4 94320320 94320517 -61309603 - B2_Mm1a SINE B2 0 193 1 6 1304 1334 86 27 0 chr4 94320824 94321010 -61309110 - B2_Mm1t SINE B2 -1 192 2 6 1304 186 265 0 0 chr4 94321089 94321157 -61308963 + CT-rich Low_complexity Low_complexity 4 71 0 6 1304 2421 167 20 42 chr4 94321661 94321770 -61308350 - L1_Mur2 LINE L1 -792 5085 4996 6 1304 1469 53 37 0 chr4 94321770 94321958 -61308162 - B2_Mm2 SINE B2 0 195 1 6 1304 2421 167 20 42 chr4 94321958 94322343 -61307777 - L1_Mur2 LINE L1 -882 4995 4602 6 1304 744 148 8 0 chr4 94322348 94322476 -61307644 - L1_Mur2 LINE L1 -1752 4125 3997 6 1304 7526 159 138 6 chr4 94322476 94324064 -61306056 - L1_Mur2 LINE L1 -2009 3868 2072 6 1304 2915 71 0 15 chr4 94324077 94324477 -61305643 + MTB LTR MaLR 1 394 -6 6 1304 3431 167 22 16 chr4 94324478 94325159 -61304961 - L1VL4 LINE L1 -5457 845 193 6 1304 787 192 0 7 chr4 94325390 94325537 -61304583 - B1_Mus1 SINE Alu -1 147 2 6 1304 535 355 0 14 chr4 94326223 94326366 -61303754 + RSINE1 SINE B4 19 159 -6 6 1304 510 214 113 53 chr4 94326491 94326624 -61303496 + B1_Mur3 SINE Alu 1 141 -8 6 1304 225 0 0 0 chr4 94326658 94326683 -61303437 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1304 254 240 28 65 chr4 94326748 94326855 -61303265 + MER53 DNA hAT 90 192 -1 6 1304 1095 222 118 106 chr4 94326939 94327256 -61302864 - MTC LTR MaLR -2 419 97 6 1304 183 80 0 0 chr4 94327256 94327281 -61302839 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1304 677 237 15 0 chr4 94327282 94327417 -61302703 - B1_Mur3 SINE Alu -12 137 1 6 1304 1095 222 118 106 chr4 94327417 94327511 -61302609 - MTC LTR MaLR -325 96 1 6 1304 1213 292 92 66 chr4 94327859 94328795 -61301325 - L1MB7 LINE L1 0 6184 5233 6 1304 2741 64 3 6 chr4 94328807 94329154 -61300966 - ORR1A1 LTR MaLR 0 346 1 6 1304 31 44 0 0 chr4 94329993 94330038 -61300082 + AT_rich Low_complexity Low_complexity 1 45 0 6 1304 363 44 0 0 chr4 94330066 94330111 -61300009 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 6 1304 888 116 0 0 chr4 94330121 94330250 -61299870 - B3 SINE B2 -86 130 2 6 1304 209 333 137 0 chr4 94330374 94330491 -61299629 - MIRc SINE MIR -121 147 15 6 1304 426 267 14 51 chr4 94330922 94331060 -61299060 + B1_Mur2 SINE Alu 2 134 -15 6 1304 693 0 0 0 chr4 94331532 94331609 -61298511 + (AATAG)n Simple_repeat Simple_repeat 3 79 0 6 1304 376 373 32 32 chr4 94331869 94332027 -61298093 + L2c LINE L2 2686 2843 -576 6 1304 602 290 7 0 chr4 94332140 94332278 -61297842 - B1F SINE Alu -10 139 1 6 1304 283 303 13 13 chr4 94332530 94332607 -61297513 + L2c LINE L2 3243 3319 -68 6 1304 474 308 28 32 chr4 94332894 94333112 -61297008 + MTE-int LTR MaLR 262 478 -1102 6 1304 1405 85 16 0 chr4 94333239 94333428 -61296692 - B2_Mm2 SINE B2 -2 193 2 6 1304 1320 77 39 0 chr4 94333544 94333725 -61296395 - B2_Mm2 SINE B2 -6 189 2 6 1304 247 312 82 14 chr4 94334190 94334336 -61295784 - HAL1 LINE L1 -2257 250 95 6 1304 346 161 97 0 chr4 94334431 94334493 -61295627 + B1_Mur3 SINE Alu 1 68 -81 6 1304 1166 55 0 14 chr4 94334638 94334786 -61295334 - B1_Mus2 SINE Alu -1 146 1 6 1304 288 286 60 20 chr4 94334940 94335040 -61295080 + PB1D9 SINE Alu 10 113 -7 6 1304 307 217 10 144 chr4 94335085 94335182 -61294938 + PB1 SINE Alu 29 112 -15 6 1304 913 301 42 47 chr4 94335383 94335742 -61294378 - ORR1E LTR MaLR 0 359 3 6 1304 1089 50 43 0 chr4 94335962 94336102 -61294018 + B1_Mus2 SINE Alu 2 147 0 6 1304 646 238 28 14 chr4 94336126 94336271 -61293849 + B1_Mur2 SINE Alu 2 148 -1 6 1304 21 82 0 0 chr4 94336368 94336417 -61293703 + AT_rich Low_complexity Low_complexity 1 49 0 6 1304 2112 130 90 14 chr4 94337044 94337410 -61292710 - Lx4B LINE L1 -5 7053 6660 6 1304 234 0 0 0 chr4 94337649 94337675 -61292445 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1304 432 0 0 0 chr4 94337675 94337722 -61292398 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1304 456 291 81 81 chr4 94337728 94337889 -61292231 - RSINE1 SINE B4 -2 163 3 6 1304 369 288 0 24 chr4 94337924 94338006 -61292114 + PB1D10 SINE Alu 8 87 -30 6 1304 183 162 0 0 chr4 94338223 94338260 -61291860 + GA-rich Low_complexity Low_complexity 4 40 0 6 1304 4931 87 11 40 chr4 94338375 94339117 -61291003 - Lx LINE L1 0 6654 5935 6 1304 3674 98 2 9 chr4 94339117 94339799 -61290321 + Lx LINE L1 5276 5948 -706 6 1304 316 305 160 0 chr4 94339990 94340121 -61289999 + MER5A DNA MER1_type 38 189 0 6 1304 649 307 208 0 chr4 94340339 94340570 -61289550 + MTE2b LTR MaLR 13 291 -88 6 1304 954 103 21 0 chr4 94341021 94341194 -61288926 - BGLII LTR ERVK 0 422 242 6 1304 330 182 0 0 chr4 94341206 94341261 -61288859 + MTC LTR MaLR 3 57 -364 6 1304 687 61 92 0 chr4 94341261 94341359 -61288761 + B1_Mm SINE Alu 40 146 -1 6 1304 1643 166 5 77 chr4 94341905 94342283 -61287837 - BGLII LTR ERVK -70 351 1 6 1304 182 62 31 0 chr4 94342382 94342414 -61287706 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1304 278 242 141 113 chr4 94342435 94342612 -61287508 - B3A SINE B2 -16 182 1 6 1304 523 350 0 24 chr4 94342911 94343078 -61287042 + RSINE1 SINE B4 3 165 0 6 1304 193 259 88 66 chr4 94344267 94344358 -61285762 + L2 LINE L2 2504 2596 -823 6 1304 223 329 38 12 chr4 94344626 94344706 -61285414 + L3 LINE CR1 4306 4387 -102 6 1304 22 56 0 0 chr4 94345770 94345806 -61284314 + AT_rich Low_complexity Low_complexity 1 36 0 6 1304 237 163 0 0 chr4 94346772 94346821 -61283299 + T-rich Low_complexity Low_complexity 2 50 0 6 1304 531 328 53 21 chr4 94347126 94347313 -61282807 + Tigger5 DNA MER2_type 37 229 -2177 6 1304 255 167 93 0 chr4 94347311 94347365 -61282755 - MER67A LTR ERV1 -474 69 11 6 1304 649 274 83 71 chr4 94347980 94348220 -61281900 + B4A SINE B4 4 246 -46 6 1304 719 270 30 0 chr4 94348429 94348693 -61281427 - L1MA4 LINE L1 -382 5918 5645 6 1304 261 264 123 8 chr4 94348855 94348985 -61281135 - L1MB1 LINE L1 -154 6014 5870 6 1304 307 269 75 0 chr4 94350581 94350674 -61279446 - PB1D10 SINE Alu -7 110 11 6 1304 816 289 99 23 chr4 94350898 94351119 -61279001 - B4A SINE B4 0 292 57 6 1304 2496 35 10 3 chr4 94351119 94351432 -61278688 - L1Md_F3 LINE L1 -1 6583 6269 6 1304 816 289 99 23 chr4 94351432 94351472 -61278648 - B4A SINE B4 -236 56 11 6 1304 351 0 0 0 chr4 94351601 94351640 -61278480 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 6 1304 384 22 0 0 chr4 94351640 94351685 -61278435 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1304 1073 106 0 0 chr4 94351685 94351827 -61278293 - B1_Mus1 SINE Alu -5 143 2 6 1304 691 310 42 15 chr4 94351993 94352255 -61277865 - MER82 DNA MER2_type -285 368 100 6 1304 528 16 0 0 chr4 94352518 94352579 -61277541 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 6 1304 853 89 19 25 chr4 94352586 94352747 -61277373 + (TTCCC)n Simple_repeat Simple_repeat 2 161 0 6 1304 225 100 39 20 chr4 94352736 94352787 -61277333 + CT-rich Low_complexity Low_complexity 3 54 0 6 1304 607 278 99 15 chr4 94352789 94352990 -61277130 - ID_B1 SINE B4 0 224 7 6 1304 408 226 169 6 chr4 94354288 94354448 -61275672 - Lx7 LINE L1 0 7696 7511 6 1304 1945 179 49 21 chr4 94354502 94354929 -61275191 - Lx7 LINE L1 -288 7408 6970 6 1304 231 346 28 18 chr4 94354929 94355038 -61275082 - Lx8 LINE L1 -204 7269 7160 7 1304 668 272 25 37 chr4 94355086 94355330 -61274790 - Lx8 LINE L1 -428 7045 6805 7 1304 273 98 0 0 chr4 94355339 94355380 -61274740 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 7 1304 354 45 0 0 chr4 94355384 94355428 -61274692 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1304 1386 50 44 6 chr4 94355455 94355637 -61274483 - B2_Mm2 SINE B2 -6 189 1 7 1304 1261 99 16 11 chr4 94356337 94356521 -61273599 + B2_Mm1t SINE B2 1 185 -8 7 1304 1293 51 79 6 chr4 94356713 94356891 -61273229 + B2_Mm1t SINE B2 2 192 -1 7 1304 252 418 14 7 chr4 94358642 94358784 -61271336 + MIR SINE MIR 1 143 -119 7 1304 235 204 0 0 chr4 94359366 94359420 -61270700 + Lx5 LINE L1 6996 7049 -1 7 1304 648 184 152 26 chr4 94359977 94360128 -61269992 + B3 SINE B2 41 210 -6 7 1304 1053 124 0 0 chr4 94360756 94360925 -61269195 + L1_Mur1 LINE L1 4946 5114 -772 7 1304 1183 98 6 0 chr4 94360930 94361094 -61269026 + B2_Mm1t SINE B2 1 165 -28 7 1304 338 122 8 34 chr4 94361154 94361220 -61268900 + B2_Mm2 SINE B2 47 114 -102 7 1304 327 49 0 0 chr4 94361235 94361276 -61268844 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 7 1304 1053 119 16 5 chr4 94361276 94361461 -61268659 + L1_Mur1 LINE L1 5106 5292 -585 7 1304 3141 72 0 5 chr4 94361457 94361889 -61268231 - Lx LINE L1 -301 6353 5924 7 1304 1450 151 63 11 chr4 94361890 94362177 -61267943 + Lx LINE L1 6353 6654 0 7 1304 23 68 0 0 chr4 94362556 94362600 -61267520 + AT_rich Low_complexity Low_complexity 1 44 0 7 1304 252 0 0 0 chr4 94362882 94362910 -61267210 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1304 356 87 0 0 chr4 94362950 94362996 -61267124 - B1_Mus1 SINE Alu -97 51 6 7 1304 293 279 0 40 chr4 94362996 94363050 -61267070 - B4 SINE B4 -157 135 43 7 1304 227 239 43 43 chr4 94363310 94363380 -61266740 + MLT1A1 LTR MaLR 322 391 -17 7 1304 310 316 16 109 chr4 94364240 94364368 -61265752 - PB1D10 SINE Alu 0 117 2 7 1304 320 352 48 0 chr4 94364679 94364784 -61265336 + RSINE1 SINE B4 56 165 0 7 1304 7007 46 0 41 chr4 94364890 94365476 -61264644 - L1Md_F2 LINE L1 -12 6570 5998 7 1304 1142 88 0 0 chr4 94365476 94365623 -61264497 + B1_Mus1 SINE Alu 2 148 0 7 1304 7007 46 0 41 chr4 94365623 94366005 -61264115 - L1Md_F2 LINE L1 -585 5997 5642 7 20 36248 30 0 0 chr4 94366007 94372246 -61257874 - L1Md_T LINE L1 0 6585 250 7 1305 1715 24 0 0 chr4 94372442 94372650 -61257470 - L1Md_F2 LINE L1 -227 5656 5449 7 1305 1490 225 102 11 chr4 94372689 94373071 -61257049 - MTD LTR MaLR 0 419 3 7 1305 850 183 160 107 chr4 94373073 94373447 -61256673 - MTD-int LTR MaLR 0 1258 865 7 1305 830 206 81 20 chr4 94373444 94373642 -61256478 - MTD-int LTR MaLR -1043 215 6 7 1305 1498 213 118 9 chr4 94373667 94373998 -61256122 - MTD LTR MaLR -35 384 15 7 1305 302 0 26 0 chr4 94373998 94374036 -61256084 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1305 1498 213 118 9 chr4 94374036 94374050 -61256070 - MTD LTR MaLR -405 14 1 7 1305 14776 63 63 49 chr4 94374050 94375164 -61254956 + Lx3A LINE L1 3472 4664 -1222 7 1305 1498 21 15 64 chr4 94375164 94375366 -61254754 - B2_Mm1a SINE B2 -1 192 1 7 1305 14776 78 64 34 chr4 94375366 94377692 -61252428 + Lx3A LINE L1 4665 6974 -7 7 1305 226 194 16 16 chr4 94378024 94378087 -61252033 + (TTG)n Simple_repeat Simple_repeat 2 64 0 7 1305 786 205 76 20 chr4 94378632 94378986 -61251134 - RMER19B LTR ERVK -319 418 1 7 1305 903 63 32 0 chr4 94378986 94379112 -61251008 - L1_Mur2 LINE L1 -380 5497 5368 7 1305 3790 99 12 55 chr4 94379106 94379551 -61250569 + L1_Mur2 LINE L1 3246 3666 -2211 7 1305 342 0 0 0 chr4 94379551 94379589 -61250531 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1305 1143 51 14 0 chr4 94379591 94379729 -61250391 - B1_Mm SINE Alu -6 141 2 7 1305 3790 99 12 55 chr4 94379729 94379950 -61250170 + L1_Mur2 LINE L1 3667 3886 -1991 7 1305 525 237 0 42 chr4 94379950 94380069 -61250051 - B1F SINE Alu -3 146 33 7 1305 538 270 92 56 chr4 94380246 94380442 -61249678 + B4 SINE B4 89 291 -1 7 1305 324 311 146 0 chr4 94380788 94381000 -61249120 - MER33 DNA MER1_type -77 247 5 7 1305 367 314 80 37 chr4 94382127 94382289 -61247831 - MARNA DNA Mariner -349 237 69 7 1305 441 319 63 26 chr4 94382598 94382788 -61247332 + MLT1D LTR MaLR 22 218 -287 7 1305 234 297 8 98 chr4 94383489 94383526 -61246594 + MT2B LTR ERVL 134 244 -356 7 1305 364 306 12 0 chr4 94383526 94383611 -61246509 + PB1D10 SINE Alu 1 86 -31 7 1305 4206 143 26 30 chr4 94383667 94384436 -61245684 - Lx3C LINE L1 -11 6965 6200 7 1305 769 150 275 0 chr4 94385091 94385258 -61244862 - B3 SINE B2 0 216 4 7 1305 443 302 132 75 chr4 94385531 94385796 -61244324 + B4A SINE B4 1 280 -12 7 1305 576 191 6 27 chr4 94385869 94386052 -61244068 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1305 25 31 0 0 chr4 94386111 94386143 -61243977 + AT_rich Low_complexity Low_complexity 1 32 0 7 1305 999 200 11 0 chr4 94386159 94386339 -61243781 - B3A SINE B2 -16 182 1 7 1305 233 250 152 71 chr4 94387694 94387793 -61242327 + PB1D10 SINE Alu 5 111 -6 7 1305 285 309 12 0 chr4 94389433 94389517 -61240603 + GA-rich Low_complexity Low_complexity 3 87 0 7 1305 355 282 216 9 chr4 94389544 94389655 -61240465 + B1F SINE Alu 6 139 -10 7 1305 297 0 0 0 chr4 94389655 94389688 -61240432 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1305 753 79 0 0 chr4 94389688 94389801 -61240319 + (GA)n Simple_repeat Simple_repeat 2 115 0 7 1305 705 274 126 57 chr4 94390491 94390944 -61239176 - L1MC3 LINE L1 -1519 6266 5783 7 1305 624 171 73 110 chr4 94390957 94391131 -61238989 - MTD LTR MaLR -13 406 240 7 1305 1113 128 0 0 chr4 94391417 94391597 -61238523 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1305 279 79 0 0 chr4 94391597 94391635 -61238485 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1305 274 320 13 0 chr4 94391664 94391739 -61238381 - MIRb SINE MIR -39 229 154 7 1305 352 221 93 37 chr4 94392045 94392153 -61237967 - PB1D7 SINE Alu -2 118 5 7 1305 200 340 21 0 chr4 94392598 94392692 -61237428 - L2b LINE L2 -348 3027 2932 7 1305 897 256 35 0 chr4 94393528 94393731 -61236389 - B3 SINE B2 -6 210 1 7 1305 222 180 0 32 chr4 94393953 94394016 -61236104 + T-rich Low_complexity Low_complexity 2 62 0 7 1305 539 252 142 8 chr4 94394642 94394882 -61235238 + L1MD LINE L1 2703 2974 -3172 7 1305 27 0 0 0 chr4 94394909 94394936 -61235184 + AT_rich Low_complexity Low_complexity 1 27 0 7 1305 648 220 0 0 chr4 94394961 94395120 -61235000 + (TA)n Simple_repeat Simple_repeat 1 159 0 7 1305 1151 253 14 3 chr4 94395120 94395414 -61234706 - Lx9 LINE L1 -127 7517 7221 7 1305 561 259 31 10 chr4 94395522 94395702 -61234418 + L1MD LINE L1 5470 5648 -652 7 1305 2143 178 60 3 chr4 94395708 94396091 -61234029 - MTD LTR MaLR -14 405 1 7 1305 3038 50 16 1 chr4 94396125 94396537 -61233583 - L1_Mus4 LINE L1 -671 5965 5548 7 1305 5392 75 9 0 chr4 94396537 94397201 -61232919 + L1_Mus4 LINE L1 5965 6634 -2 7 1305 563 256 74 65 chr4 94397201 94397308 -61232812 + L1MA4 LINE L1 5678 5787 -513 7 1305 378 0 0 0 chr4 94397308 94397350 -61232770 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1305 563 256 74 65 chr4 94397350 94397472 -61232648 + L1MA4 LINE L1 5788 5909 -391 7 1305 395 346 84 16 chr4 94397786 94397977 -61232143 + MLT1H LTR MaLR 95 298 -251 7 1305 186 339 0 0 chr4 94398306 94398362 -61231758 - L2c LINE L2 -232 3155 3100 7 1305 37 23 0 0 chr4 94398368 94398412 -61231708 + AT_rich Low_complexity Low_complexity 1 44 0 7 1305 252 253 30 36 chr4 94398447 94398543 -61231577 - ID4_ SINE ID -51 101 7 7 1305 183 250 0 0 chr4 94398558 94398610 -61231510 + CT-rich Low_complexity Low_complexity 1 52 0 7 1305 759 68 17 17 chr4 94398640 94398760 -61231360 + (TTCC)n Simple_repeat Simple_repeat 3 122 0 7 1305 210 143 0 0 chr4 94398857 94398892 -61231228 + (TCC)n Simple_repeat Simple_repeat 1 35 0 7 1305 532 241 29 14 chr4 94398902 94399041 -61231079 - B1F1 SINE Alu -8 141 1 7 1305 654 136 442 6 chr4 94399902 94400058 -61230062 - URR1B DNA MER1_type 0 225 2 7 1305 189 132 0 0 chr4 94400416 94400454 -61229666 + (TGG)n Simple_repeat Simple_repeat 3 40 0 7 1305 236 320 47 31 chr4 94400510 94400639 -61229481 - MIRb SINE MIR -112 156 26 7 1305 188 355 148 27 chr4 94400839 94401102 -61229018 - L2a LINE L2 -32 3394 3100 7 1305 356 324 28 0 chr4 94401885 94401993 -61228127 + PB1D10 SINE Alu 2 112 -5 7 1305 186 43 0 0 chr4 94402001 94402024 -61228096 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1305 403 307 9 4 chr4 94402228 94402334 -61227786 + B1F SINE Alu 1 109 -11 7 1305 4310 145 9 13 chr4 94402537 94403289 -61226831 - Lx2B LINE L1 -714 6286 5541 7 1305 3068 176 65 89 chr4 94403285 94404011 -61226109 + Lx2B LINE L1 6291 6998 -2 7 1305 355 308 158 0 chr4 94404268 94404388 -61225732 - ID_B1 SINE B4 -8 216 78 7 1305 337 243 90 56 chr4 94404412 94404556 -61225564 + B1F2 SINE Alu 1 149 0 7 1305 394 289 157 0 chr4 94405268 94405389 -61224731 + B1F SINE Alu 3 142 -7 7 1305 264 127 0 0 chr4 94406654 94406709 -61223411 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1305 1063 108 216 0 chr4 94409003 94409179 -61220941 - URR1A DNA MER1_type -11 215 2 7 1305 201 315 27 0 chr4 94409726 94409799 -61220321 + MIRb SINE MIR 150 224 -44 7 1305 929 240 25 15 chr4 94410086 94410289 -61219831 - B3 SINE B2 -9 207 3 7 1305 256 143 271 0 chr4 94410652 94410663 -61219457 + MT2B LTR ERVL 152 181 -420 7 1305 363 63 365 0 chr4 94410663 94410726 -61219394 + B1_Mus2 SINE Alu 2 87 -60 7 1305 396 284 0 0 chr4 94411102 94411183 -61218937 - ID4 SINE ID -2 81 1 7 1305 477 286 8 23 chr4 94411183 94411312 -61218808 + ID_B1 SINE B4 91 217 -7 7 1305 349 325 0 0 chr4 94411317 94411397 -61218723 + ID4_ SINE ID 3 82 -1 7 1305 356 281 115 15 chr4 94411584 94411714 -61218406 - B1F2 SINE Alu -5 144 2 7 1305 189 0 0 0 chr4 94412348 94412369 -61217751 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1305 261 0 0 0 chr4 94412805 94412834 -61217286 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1305 269 279 245 19 chr4 94412838 94412944 -61217176 - RSINE1 SINE B4 -31 134 5 8 1305 189 0 0 0 chr4 94413210 94413231 -61216889 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1305 243 247 83 36 chr4 94413688 94413772 -61216348 - MIRb SINE MIR -83 185 98 8 1305 239 331 111 44 chr4 94414030 94414210 -61215910 + MLT1K LTR MaLR 401 592 -3 8 1305 1651 175 160 3 chr4 94415341 94415691 -61214429 + MTD LTR MaLR 3 407 -12 8 1305 399 41 0 0 chr4 94415694 94415743 -61214377 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1305 369 0 0 0 chr4 94415743 94415783 -61214337 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1305 5746 97 50 29 chr4 94417061 94417930 -61212190 - RMER17D LTR ERVK -2 887 1 8 1305 303 333 10 0 chr4 94418009 94418105 -61212015 - RMER15 LTR ERVL -108 467 371 8 1305 276 149 0 0 chr4 94418226 94418273 -61211847 + (TTC)n Simple_repeat Simple_repeat 2 48 0 8 1305 196 292 47 70 chr4 94418853 94418982 -61211138 + MIR SINE MIR 127 252 -10 8 1305 429 200 17 42 chr4 94419746 94419761 -61210359 + ID_B1 SINE B4 97 212 -11 8 1305 854 39 0 0 chr4 94419761 94419865 -61210255 + B1_Mus1 SINE Alu 33 136 -12 8 1305 318 26 0 0 chr4 94419866 94419905 -61210215 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1305 1090 312 168 35 chr4 94419921 94420314 -61209806 + Tigger7 DNA MER2_type 10 437 -2054 8 1305 189 0 0 0 chr4 94420314 94420335 -61209785 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1305 1090 291 121 33 chr4 94420335 94420541 -61209579 + Tigger7 DNA MER2_type 438 615 -1876 8 1305 229 185 146 18 chr4 94420687 94420742 -61209378 - RSINE1 SINE B4 -31 134 73 8 1305 323 235 15 0 chr4 94420869 94420937 -61209183 + MER82 DNA MER2_type 94 162 -491 8 1305 579 259 81 45 chr4 94420977 94421175 -61208945 + MER82 DNA MER2_type 296 500 -153 8 1305 780 206 101 25 chr4 94421978 94422177 -61207943 - B3 SINE B2 -1 215 2 8 1305 552 289 49 0 chr4 94422380 94422522 -61207598 + B1F SINE Alu 1 149 0 8 1305 205 231 19 0 chr4 94422656 94422708 -61207412 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 1305 1228 61 0 7 chr4 94422810 94422958 -61207162 - B1_Mus1 SINE Alu 0 148 2 8 1305 707 224 36 86 chr4 94423367 94423587 -61206533 - B3 SINE B2 -7 209 1 8 1305 447 78 0 0 chr4 94424959 94425023 -61205097 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 1305 207 0 0 0 chr4 94425024 94425047 -61205073 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1305 365 157 116 63 chr4 94426207 94426302 -61203818 - PB1D10 SINE Alu 0 117 18 8 1305 315 167 14 27 chr4 94426308 94426382 -61203738 - L1MA6 LINE L1 -4 6296 6224 8 1305 2336 125 69 0 chr4 94426445 94426806 -61203314 + ORR1B1 LTR MaLR 1 386 -8 8 1305 731 159 0 0 chr4 94428088 94428195 -61201925 + B3 SINE B2 1 107 -109 8 1305 952 252 28 9 chr4 94428308 94428520 -61201600 + B3 SINE B2 1 216 0 8 1305 275 85 21 0 chr4 94428610 94428657 -61201463 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 1305 293 287 84 32 chr4 94429504 94429659 -61200461 + L1MA6 LINE L1 5989 6151 -149 8 1305 581 285 14 7 chr4 94429666 94429811 -61200309 + ID_B1 SINE B4 77 222 -2 8 1305 4883 143 141 18 chr4 94430169 94430299 -61199821 - RLTR25B LTR ERVK 0 1028 873 8 1305 594 0 0 0 chr4 94430299 94430365 -61199755 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1305 426 20 0 0 chr4 94430365 94430415 -61199705 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1305 4883 143 141 18 chr4 94430415 94431196 -61198924 - RLTR25B LTR ERVK -156 872 4 8 1305 235 244 75 32 chr4 94431196 94431235 -61198885 - LTR33 LTR ERVL -451 64 22 8 1305 449 319 0 0 chr4 94431256 94431372 -61198748 + PB1 SINE Alu 2 117 -10 8 1305 306 273 0 29 chr4 94431750 94431818 -61198302 + RSINE1 SINE B4 16 81 -84 8 1305 498 96 0 0 chr4 94431829 94431902 -61198218 + (TA)n Simple_repeat Simple_repeat 2 74 0 8 1305 549 0 0 0 chr4 94432277 94432338 -61197782 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1305 325 203 95 24 chr4 94432472 94432598 -61197522 + Lx5 LINE L1 6916 7050 0 8 1305 1881 162 46 16 chr4 94432669 94433039 -61197081 + BGLII_B LTR ERVK 1 381 -60 8 1305 24 32 0 0 chr4 94433360 94433391 -61196729 + AT_rich Low_complexity Low_complexity 1 31 0 8 1305 749 325 9 19 chr4 94433808 94434018 -61196102 - B4 SINE B4 0 292 85 8 1305 1584 37 15 46 chr4 94434333 94434529 -61195591 - B2_Mm1t SINE B2 -2 191 2 8 1305 197 154 39 0 chr4 94434541 94434593 -61195527 + CT-rich Low_complexity Low_complexity 3 56 0 8 1305 441 274 18 28 chr4 94434594 94434703 -61195417 - PB1D10 SINE Alu -9 108 1 8 1305 496 257 80 120 chr4 94435325 94435626 -61194494 - ORR1E LTR MaLR 0 359 71 8 1305 513 0 0 0 chr4 94436161 94436218 -61193902 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 8 1305 8559 45 10 1 chr4 94436679 94438406 -61191714 - L1Md_F2 LINE L1 -2 6580 4838 8 1305 208 49 0 68 chr4 94438479 94438523 -61191597 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1305 407 252 49 78 chr4 94438646 94438788 -61191332 - RSINE1 SINE B4 0 165 28 8 1305 8630 29 1 3 chr4 94439679 94440793 -61189327 - L1Md_F3 LINE L1 -4 6580 5469 8 1305 391 206 44 0 chr4 94441021 94441089 -61189031 + ID4_ SINE ID 2 72 -11 8 1305 1161 285 21 11 chr4 94441107 94441394 -61188726 + B4 SINE B4 1 290 -2 8 1305 394 303 8 15 chr4 94441418 94441552 -61188568 - B4A SINE B4 -158 134 2 8 1305 677 248 43 0 chr4 94441675 94441816 -61188304 + RSINE1 SINE B4 4 150 -15 8 1305 270 0 0 0 chr4 94441822 94441852 -61188268 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1305 249 33 0 0 chr4 94442860 94442890 -61187230 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1305 827 313 102 18 chr4 94443537 94443872 -61186248 + MTD LTR MaLR 18 380 -39 8 1305 710 52 0 25 chr4 94443964 94444082 -61186038 + L1Md_F3 LINE L1 6470 6584 0 8 1305 1405 75 16 5 chr4 94444731 94444918 -61185202 + B2_Mm2 SINE B2 2 190 -5 8 1305 345 254 0 0 chr4 94445220 94445291 -61184829 - ID4_ SINE ID -11 72 2 8 1305 420 20 0 0 chr4 94445430 94445479 -61184641 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1305 1751 225 97 55 chr4 94445660 94446384 -61183736 + RLTR40 LTR ERVK 19 772 -45 8 1305 27 49 0 0 chr4 94446537 94446578 -61183542 + AT_rich Low_complexity Low_complexity 1 41 0 8 1305 405 0 0 0 chr4 94446676 94446721 -61183399 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1305 2254 208 112 4 chr4 94446882 94447390 -61182730 - Lx2B LINE L1 0 7000 6438 8 1305 400 325 29 11 chr4 94448284 94448458 -61181662 + B3A SINE B2 4 180 -18 8 1305 351 0 0 0 chr4 94448460 94448499 -61181621 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1305 342 0 0 0 chr4 94448499 94448536 -61181584 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1305 257 240 0 0 chr4 94448536 94448586 -61181534 + B3 SINE B2 17 66 -150 8 1305 336 35 0 49 chr4 94448586 94448647 -61181473 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 8 1305 860 92 130 0 chr4 94448650 94448781 -61181339 - B1_Mus1 SINE Alu 0 148 1 8 1305 391 202 48 0 chr4 94448823 94448907 -61181213 + B3 SINE B2 118 205 -11 8 1305 27 0 0 0 chr4 94448922 94448949 -61181171 + AT_rich Low_complexity Low_complexity 1 27 0 8 1305 223 220 20 60 chr4 94449020 94449170 -61180950 + (TTAA)n Simple_repeat Simple_repeat 1 144 0 8 1305 244 340 144 50 chr4 94449367 94449568 -61180552 - MLT1H LTR MaLR -316 233 14 8 1305 1043 193 25 0 chr4 94449960 94450162 -61179958 - B3 SINE B2 -4 212 6 8 1305 635 269 19 12 chr4 94450274 94450436 -61179684 - RSINE1 SINE B4 0 165 3 8 1305 238 327 36 48 chr4 94450439 94450606 -61179514 - MER5A1 DNA MER1_type 0 166 2 8 1305 374 324 62 7 chr4 94451269 94451415 -61178705 + MIRb SINE MIR 55 208 -60 8 1305 4163 142 50 38 chr4 94451957 94452704 -61177416 - RMER6A LTR ERVK 0 756 1 8 1305 243 215 175 12 chr4 94452716 94452796 -61177324 - B1F SINE Alu -54 95 3 8 1305 455 290 129 38 chr4 94453065 94453134 -61176986 + B4 SINE B4 2 83 -209 8 1305 204 40 0 0 chr4 94453134 94453159 -61176961 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1305 455 290 129 38 chr4 94453159 94453329 -61176791 + B4 SINE B4 84 262 -30 8 1305 692 234 69 6 chr4 94453892 94454051 -61176069 - ID_B1 SINE B4 -1 223 55 8 1305 217 319 91 24 chr4 94454333 94454542 -61175578 - L2b LINE L2 -80 3295 3073 8 1305 1286 224 93 0 chr4 94454918 94455271 -61174849 - ORR1B1 LTR MaLR -8 386 1 8 1305 551 226 100 6 chr4 94455341 94455501 -61174619 + MIR SINE MIR 82 256 -6 8 1305 208 93 0 65 chr4 94456383 94456429 -61173691 + C-rich Low_complexity Low_complexity 2 44 0 8 1305 1991 138 3 44 chr4 94456487 94456827 -61173293 - ORR1A3 LTR MaLR 0 326 1 8 1305 331 136 0 0 chr4 94457350 94457416 -61172704 - L1Md_F2 LINE L1 -2 6580 6515 8 1305 42138 4 0 0 chr4 94458295 94464871 -61165249 - L1Md_A LINE L1 0 6582 7 8 1305 22 0 0 0 chr4 94464971 94464993 -61165127 + AT_rich Low_complexity Low_complexity 1 22 0 8 1305 2866 78 7 48 chr4 94466167 94466584 -61163536 - MTB LTR MaLR 0 400 1 8 1305 423 337 72 0 chr4 94467836 94468002 -61162118 - MER21B LTR ERV1 -124 739 562 8 1305 6546 38 4 5 chr4 94468002 94468778 -61161342 - L1Md_F2 LINE L1 -1 6581 5807 8 1305 1204 73 0 6 chr4 94468778 94468943 -61161177 + B2_Mm2 SINE B2 13 176 -19 9 1305 364 331 80 48 chr4 94468947 94469134 -61160986 - MER21B LTR ERV1 -670 193 1 8 1305 301 273 80 18 chr4 94472100 94472212 -61157908 - L1MA9 LINE L1 -97 6215 6097 9 1305 281 295 24 39 chr4 94472302 94472429 -61157691 - L1MA9 LINE L1 -371 5941 5817 9 1305 372 269 63 0 chr4 94472491 94472686 -61157434 - L1MA9 LINE L1 -665 5626 5411 9 1305 379 276 29 0 chr4 94472750 94472855 -61157265 - L1MA9 LINE L1 -747 5424 5317 9 1305 2205 253 60 9 chr4 94472849 94473431 -61156689 - Lx2B LINE L1 -2 6998 6387 9 1305 252 304 105 64 chr4 94473428 94473723 -61156397 - L1MA9 LINE L1 -816 5327 5021 9 1305 515 287 72 44 chr4 94473745 94474066 -61156054 - L1MA9 LINE L1 -1234 4906 4577 9 1305 26 0 0 0 chr4 94474501 94474527 -61155593 + AT_rich Low_complexity Low_complexity 1 26 0 9 1305 390 21 0 0 chr4 94474530 94474577 -61155543 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1305 5014 133 48 2 chr4 94474579 94475385 -61154735 - L1_Mur2 LINE L1 -294 5583 4741 9 1305 3991 195 43 0 chr4 94475386 94476124 -61153996 + Lx5 LINE L1 6269 7038 -12 9 1305 1343 256 63 0 chr4 94476124 94476456 -61153664 - MTE2b LTR MaLR -25 354 2 9 1305 28 55 0 40 chr4 94476586 94476661 -61153459 + AT_rich Low_complexity Low_complexity 1 72 0 9 1305 23 33 0 0 chr4 94477044 94477074 -61153046 + AT_rich Low_complexity Low_complexity 1 30 0 9 1305 655 313 89 44 chr4 94477179 94477768 -61152352 - L1MEb LINE L1 -5466 734 103 9 1305 396 0 0 0 chr4 94478213 94478257 -61151863 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1305 920 215 72 113 chr4 94478305 94478640 -61151480 - ORR1D1 LTR MaLR -5 369 38 9 1305 255 250 125 0 chr4 94478756 94478836 -61151284 - ORR1D1 LTR MaLR -283 91 2 9 1305 185 0 40 0 chr4 94479752 94479777 -61150343 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 9 1305 2791 45 0 6 chr4 94479933 94480272 -61149848 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1305 19180 18 1 2 chr4 94480272 94482397 -61147723 - IAPEz-int LTR ERVK 0 6481 4359 9 1305 29425 30 36 11 chr4 94482395 94485864 -61144256 - IAPEz-int LTR ERVK -2919 3562 8 9 1305 2804 42 0 6 chr4 94485864 94486203 -61143917 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1305 210 211 553 0 chr4 94486206 94486282 -61143838 + MIR SINE MIR 42 159 -103 9 1305 1413 223 83 11 chr4 94486340 94486689 -61143431 - MTE2a LTR MaLR -1 378 5 9 1305 21 0 0 0 chr4 94486744 94486765 -61143355 + AT_rich Low_complexity Low_complexity 1 21 0 9 1305 739 221 99 52 chr4 94487420 94487782 -61142338 - Lx7 LINE L1 0 7696 7318 9 1305 1674 167 39 87 chr4 94487854 94488235 -61141885 - ORR1B1 LTR MaLR 0 394 1 9 1305 785 206 38 0 chr4 94488240 94488400 -61141720 - Lx7 LINE L1 -413 7283 7118 9 1305 5782 180 53 67 chr4 94488397 94489901 -61140219 - Lx7 LINE L1 -776 6920 5454 9 1305 533 305 98 0 chr4 94490005 94490267 -61139853 - L1M3e LINE L1 -1176 5930 5637 9 1305 584 296 81 0 chr4 94490300 94490472 -61139648 - B3 SINE B2 -30 186 1 9 1305 351 239 181 31 chr4 94490528 94490688 -61139432 - L1M3e LINE L1 -1527 5576 5393 9 1305 527 296 112 10 chr4 94490686 94490929 -61139191 - L1M3e LINE L1 -2007 5096 4829 9 1305 796 300 34 0 chr4 94490940 94491155 -61138965 - L1M3e LINE L1 -2445 4658 4438 9 1305 215 79 26 0 chr4 94491155 94491193 -61138927 + (TAG)n Simple_repeat Simple_repeat 1 39 0 9 1305 796 300 34 0 chr4 94491193 94491300 -61138820 - L1M3e LINE L1 -2666 4437 4326 9 1305 1867 165 45 20 chr4 94491309 94491681 -61138439 - ORR1C1 LTR MaLR -12 366 1 9 1305 531 206 108 32 chr4 94491707 94491958 -61138162 - L1M3e LINE L1 -2817 4286 4017 9 1305 1075 303 58 59 chr4 94491954 94492665 -61137455 - L1_Mur3 LINE L1 -3633 2247 1540 9 1305 215 31 31 0 chr4 94492665 94492697 -61137423 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1305 1075 303 58 59 chr4 94492697 94492768 -61137352 - L1_Mur3 LINE L1 -4341 1539 1466 9 1305 617 325 63 33 chr4 94493100 94493434 -61136686 - L1M3e LINE L1 -6678 352 9 9 1305 647 270 16 22 chr4 94495437 94495619 -61134501 + B3 SINE B2 36 216 0 9 1305 23 0 0 0 chr4 94496468 94496491 -61133629 + AT_rich Low_complexity Low_complexity 1 23 0 9 1305 24 0 0 0 chr4 94497135 94497159 -61132961 + AT_rich Low_complexity Low_complexity 1 24 0 9 1305 313 277 67 67 chr4 94497159 94497337 -61132783 - HAL1 LINE L1 0 2507 2330 9 1305 307 281 16 198 chr4 94497352 94497420 -61132700 - MER5A DNA MER1_type -25 164 106 9 1305 872 208 18 62 chr4 94497420 94497646 -61132474 - B3 SINE B2 0 216 1 9 1305 307 281 16 198 chr4 94497646 94497759 -61132361 - MER5A DNA MER1_type -84 105 16 9 1305 785 168 6 16 chr4 94497795 94497977 -61132143 + CT-rich Low_complexity Low_complexity 1 180 0 9 1305 226 87 21 21 chr4 94498024 94498071 -61132049 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 9 1305 451 281 47 0 chr4 94498075 94498203 -61131917 - B1F SINE Alu 0 149 16 9 1305 1539 75 0 5 chr4 94499786 94500000 -61130120 - Lx3_Mus LINE L1 0 7009 6797 9 1305 6884 96 82 12 chr4 94500000 94501114 -61129006 - Lx3A LINE L1 -203 6778 5587 1 1305 2851 156 168 20 chr4 94501139 94501918 -61128202 - RMER19B LTR ERVK -9 893 1 2 1305 243 0 0 0 chr4 94502308 94502335 -61127785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1305 1031 59 22 0 chr4 94502335 94502470 -61127650 - B1_Mus1 SINE Alu -10 138 1 4 1306 262 243 47 37 chr4 94503462 94503569 -61126551 - L1M5 LINE L1 -459 5665 5558 5 1306 518 300 9 0 chr4 94504819 94504929 -61125191 - B3 SINE B2 -104 112 2 6 1306 485 286 7 13 chr4 94505409 94505558 -61124562 - B1F SINE Alu 0 149 2 7 1306 663 260 33 128 chr4 94505593 94506014 -61124106 - L1_Mur3 LINE L1 -324 5559 5146 8 1306 36722 38 5 6 chr4 94506025 94512300 -61117820 - L1Md_T LINE L1 0 6585 219 9 1306 262 256 0 37 chr4 94512296 94512377 -61117743 - L1M2 LINE L1 -926 5214 5137 1 1306 378 61 0 0 chr4 94512389 94512438 -61117682 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1306 1087 278 152 26 chr4 94512438 94513124 -61116996 - L1M2 LINE L1 -1007 5136 4365 1 1306 937 220 36 23 chr4 94513163 94513382 -61116738 - ID_B1 SINE B4 -2 222 1 1 1306 784 279 72 82 chr4 94513568 94513670 -61116450 - L1_Mur3 LINE L1 -1870 4010 3934 8 1306 1182 55 7 0 chr4 94513670 94513816 -61116304 - B1_Mus2 SINE Alu 0 147 1 1 1306 784 279 72 82 chr4 94513816 94514271 -61115849 - L1_Mur3 LINE L1 -1947 3933 3459 8 1306 719 268 232 0 chr4 94514713 94514941 -61115179 + B4A SINE B4 10 290 -2 1 1306 355 330 25 8 chr4 94515806 94515925 -61114195 + MIR SINE MIR 1 121 -141 1 1306 23 0 0 0 chr4 94515958 94515981 -61114139 + AT_rich Low_complexity Low_complexity 1 23 0 1 1306 898 9 9 9 chr4 94516928 94517040 -61113080 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1306 200 213 180 0 chr4 94520578 94520639 -61109481 - MER5A DNA MER1_type -6 183 112 1 1306 276 268 96 25 chr4 94520655 94520759 -61109361 - MER5A DNA MER1_type -72 117 14 1 1306 471 200 61 40 chr4 94520891 94520990 -61109130 - B1F SINE Alu -1 148 48 1 1306 429 269 56 69 chr4 94522500 94522644 -61107476 - B1F SINE Alu -1 148 7 2 1306 808 268 11 11 chr4 94523241 94523426 -61106694 + B3 SINE B2 2 186 -30 2 1306 1394 62 17 0 chr4 94523432 94523608 -61106512 + B2_Mm2 SINE B2 3 181 -14 2 1306 188 35 35 0 chr4 94523794 94523823 -61106297 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1306 25 65 0 0 chr4 94523862 94523908 -61106212 + AT_rich Low_complexity Low_complexity 1 46 0 2 1306 1104 285 52 30 chr4 94523916 94524318 -61105802 - Lx5 LINE L1 -12 7038 6628 2 1306 2239 172 59 43 chr4 94524356 94524914 -61105206 + L1_Mur3 LINE L1 4019 4585 -1295 2 1306 189 74 0 0 chr4 94525536 94525563 -61104557 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1306 731 273 29 10 chr4 94527197 94527404 -61102716 - Lx8 LINE L1 -1072 6401 6191 2 1306 290 335 47 82 chr4 94527938 94528289 -61101831 - L2b LINE L2 -113 3274 2910 2 1306 4341 116 43 18 chr4 94529222 94529949 -61100171 - RMER6A LTR ERVK -11 745 1 3 1306 2667 253 71 111 chr4 94532765 94533232 -61096888 + Lx8 LINE L1 1135 1581 -4299 3 1306 1164 62 7 0 chr4 94533232 94533376 -61096744 + B1_Mus2 SINE Alu 3 147 0 3 1306 2667 247 75 120 chr4 94533376 94533577 -61096543 + Lx8 LINE L1 1582 1715 -4165 3 1306 756 0 0 0 chr4 94533577 94533661 -61096459 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 3 1306 2667 247 75 120 chr4 94533661 94534317 -61095803 + Lx8 LINE L1 1716 2388 -3492 3 1306 1183 187 27 5 chr4 94534317 94534537 -61095583 - URR1B DNA MER1_type 0 225 1 3 1306 2667 247 75 120 chr4 94534537 94535103 -61095017 + Lx8 LINE L1 2389 2953 -2927 3 1306 1244 213 228 3 chr4 94535107 94535418 -61094702 + MTC LTR MaLR 39 419 -2 3 1306 2211 273 75 109 chr4 94535420 94536025 -61094095 + Lx8 LINE L1 4192 4731 -1149 3 1306 288 0 0 0 chr4 94536025 94536057 -61094063 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1306 2211 254 60 80 chr4 94536057 94536619 -61093501 + Lx8 LINE L1 4732 5302 -578 3 1306 4898 69 2 16 chr4 94536619 94537263 -61092857 - L1_Mus1 LINE L1 0 6567 5933 3 1306 2211 254 60 80 chr4 94537263 94537520 -61092600 + Lx8 LINE L1 5303 5561 -319 3 1306 962 90 25 37 chr4 94537520 94537682 -61092438 + L1_Mus3 LINE L1 6476 6635 -3 3 1306 2211 254 60 80 chr4 94537682 94537737 -61092383 + Lx8 LINE L1 5562 5606 -274 3 1306 247 287 19 19 chr4 94537898 94538001 -61092119 + Lx8 LINE L1 6101 6203 -1270 3 1306 2931 293 25 16 chr4 94538086 94539040 -61091080 + Lx8 LINE L1 6197 7159 -314 3 1306 218 248 28 9 chr4 94539089 94539195 -61090925 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1306 400 225 45 0 chr4 94539195 94539284 -61090836 - MLT1A0 LTR MaLR -65 300 208 4 1306 279 295 116 0 chr4 94540060 94540155 -61089965 - MIR3 SINE MIR -21 187 82 4 1306 4332 102 44 12 chr4 94541686 94542348 -61087772 + Lx LINE L1 5970 6652 -2 4 1306 21 0 0 0 chr4 94542392 94542413 -61087707 + AT_rich Low_complexity Low_complexity 1 21 0 4 1306 409 275 55 40 chr4 94542819 94543059 -61087061 + L1M3c LINE L1 1570 1808 -4981 4 1306 1512 256 49 54 chr4 94543257 94543905 -61086215 + L1_Mur3 LINE L1 397 1041 -6671 4 1306 677 168 14 21 chr4 94543905 94544045 -61086075 - RMER12 LTR ERVK 0 1322 1184 4 1306 1071 207 0 63 chr4 94544036 94544258 -61085862 + ORR1B2 LTR MaLR 160 367 0 4 1306 1157 56 14 0 chr4 94544267 94544411 -61085709 + B1_Mm SINE Alu 2 147 0 4 1306 222 116 0 0 chr4 94544411 94544454 -61085666 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1306 1105 83 0 0 chr4 94544462 94544607 -61085513 + B1_Mus1 SINE Alu 1 145 -3 5 1306 821 10 0 10 chr4 94544610 94544709 -61085411 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 5 1306 393 290 58 7 chr4 94545003 94545142 -61084978 - B1F1 SINE Alu 0 149 4 5 1306 384 77 0 0 chr4 94545784 94545836 -61084284 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1306 290 213 13 51 chr4 94546597 94546676 -61083444 - MIRb SINE MIR -99 169 94 5 1306 36305 14 1 7 chr4 94546782 94551966 -61078154 + L1Md_A LINE L1 444 5586 -297 5 1306 8807 16 0 0 chr4 94551966 94552962 -61077158 + L1Md_A LINE L1 5587 6582 0 5 1306 2055 110 27 61 chr4 94553394 94553724 -61076396 + ORR1A2 LTR MaLR 1 319 -8 5 1306 1999 168 49 27 chr4 94554422 94554832 -61075288 - Lx7 LINE L1 -1688 6008 5590 5 1306 877 210 51 4 chr4 94555176 94555429 -61074691 + L1_Mur3 LINE L1 949 1213 -6515 5 1306 6726 158 33 33 chr4 94555449 94555732 -61074388 + L1_Mur3 LINE L1 1773 2056 -3824 5 1306 270 0 0 0 chr4 94555732 94555762 -61074358 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1306 7406 158 33 33 chr4 94555762 94556952 -61073168 + L1_Mur3 LINE L1 2057 3246 -2634 5 1306 1263 55 7 0 chr4 94556952 94557098 -61073022 + B1_Mm SINE Alu 1 147 0 6 1306 3503 154 10 102 chr4 94557112 94557859 -61072261 + L1_Mur3 LINE L1 4477 5131 -749 5 1306 36095 36 1 0 chr4 94557860 94563862 -61066258 + L1Md_T LINE L1 1 5589 -297 6 1306 9584 5 0 0 chr4 94563862 94564858 -61065262 + L1Md_T LINE L1 5590 6585 0 6 1306 1517 174 105 33 chr4 94564858 94564929 -61065191 + L1_Mur3 LINE L1 5118 5188 -692 5 1306 2536 77 157 0 chr4 94564929 94565293 -61064827 + BGLII LTR ERVK 1 421 0 6 1306 1517 174 105 33 chr4 94565293 94565584 -61064536 + L1_Mur3 LINE L1 5189 5506 -374 5 1306 841 161 99 6 chr4 94565580 94565742 -61064378 - Lx7 LINE L1 -351 5529 5353 5 1306 6000 123 13 1 chr4 94566002 94566847 -61063273 - Lx4A LINE L1 0 7058 6204 6 1306 1415 150 159 7 chr4 94566847 94567146 -61062974 - Lx7 LINE L1 -531 5349 5002 5 1306 403 316 141 47 chr4 94567178 94567477 -61062643 + MER82 DNA MER2_type 325 651 -2 6 1306 429 36 0 0 chr4 94569607 94569662 -61060458 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1306 5682 121 19 71 chr4 94569900 94570849 -61059271 + RLTR13D6 LTR ERVK 1 900 -2 6 1306 212 0 36 0 chr4 94571811 94571839 -61058281 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1306 432 208 0 13 chr4 94571855 94571933 -61058187 - ID4 SINE ID -2 81 5 6 1306 803 291 23 5 chr4 94572760 94572974 -61057146 - ID_B1 SINE B4 -5 219 2 6 1306 470 232 55 85 chr4 94573444 94573609 -61056511 - RSINE1 SINE B4 -2 163 4 7 1306 10807 114 18 96 chr4 94574919 94576901 -61053219 + L1VL4 LINE L1 193 2100 -1459 7 1306 850 108 0 8 chr4 94576901 94577023 -61053097 - B2_Mm2 SINE B2 -73 122 2 7 1306 10807 114 18 96 chr4 94577023 94577525 -61052595 + L1VL4 LINE L1 2101 2585 -974 7 1306 7680 98 18 1 chr4 94577526 94579077 -61051043 + L1_Mus4 LINE L1 5060 6632 -4 7 1306 28 48 0 0 chr4 94579172 94579214 -61050906 + AT_rich Low_complexity Low_complexity 1 42 0 7 1306 36183 35 1 0 chr4 94579309 94585286 -61044834 + L1Md_T LINE L1 1 5589 -297 7 1306 9515 9 0 0 chr4 94585286 94586282 -61043838 + L1Md_T LINE L1 5590 6585 0 7 1306 21 0 0 0 chr4 94586541 94586562 -61043558 + GC_rich Low_complexity Low_complexity 1 21 0 7 1306 250 273 29 29 chr4 94587563 94587631 -61042489 + ID4 SINE ID 14 81 -2 7 1306 1952 136 70 76 chr4 94587761 94588144 -61041976 + ORR1B1 LTR MaLR 1 381 -13 7 1306 504 191 0 33 chr4 94588211 94588303 -61041817 - B1_Mur2 SINE Alu -36 113 25 7 1306 552 222 9 18 chr4 94589544 94589654 -61040466 + B3 SINE B2 57 165 -51 8 1306 333 0 0 0 chr4 94589654 94589691 -61040429 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1306 1007 24 16 0 chr4 94589704 94589829 -61040291 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 8 1306 230 159 167 24 chr4 94589835 94589919 -61040201 + L1MC2 LINE L1 6248 6343 -1 8 1306 375 78 0 0 chr4 94589923 94589974 -61040146 + (TA)n Simple_repeat Simple_repeat 1 51 0 8 1306 208 239 45 0 chr4 94590021 94590109 -61040011 + (TA)n Simple_repeat Simple_repeat 2 93 0 8 1306 318 302 90 25 chr4 94590549 94590671 -61039449 + MER82 DNA MER2_type 234 363 -290 8 1306 270 333 10 50 chr4 94590724 94590825 -61039295 + MER82 DNA MER2_type 547 643 -10 8 1306 200 219 16 0 chr4 94591961 94592025 -61038095 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 1306 241 33 0 0 chr4 94592630 94592660 -61037460 - L1_Mm LINE L1 -85 5798 5769 8 1306 5035 58 16 5 chr4 94592662 94593267 -61036853 + L1Md_F2 LINE L1 5967 6578 -4 8 1306 740 340 90 33 chr4 94594030 94594420 -61035700 + MLT1C LTR MaLR 42 453 -14 8 1306 1299 68 27 48 chr4 94594698 94594884 -61035236 + B2_Mm2 SINE B2 2 183 -12 9 1306 180 0 0 0 chr4 94594884 94594904 -61035216 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1306 186 125 20 40 chr4 94595810 94595860 -61034260 + A-rich Low_complexity Low_complexity 2 50 0 9 1306 183 156 0 0 chr4 94596901 94596933 -61033187 + CT-rich Low_complexity Low_complexity 1 32 0 9 1306 677 165 26 0 chr4 94596958 94597073 -61033047 - B1_Mur2 SINE Alu 0 149 32 9 1306 280 299 0 0 chr4 94597238 94597305 -61032815 + MLT1C LTR MaLR 1 67 -400 9 1306 713 99 19 26 chr4 94597685 94597841 -61032279 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 9 1306 318 270 160 0 chr4 94597845 94597945 -61032175 - PB1D9 SINE Alu 0 120 5 9 1306 444 172 344 0 chr4 94598349 94598477 -61031643 + URR1A DNA MER1_type 1 172 -54 9 1306 242 283 33 0 chr4 94598728 94598788 -61031332 - B4 SINE B4 0 292 231 9 1306 443 269 25 22 chr4 94598800 94599043 -61031077 + CT-rich Low_complexity Low_complexity 1 243 0 1 1306 1801 237 77 34 chr4 94599149 94599616 -61030504 - RMER19C LTR ERVK -1 610 124 1 1306 337 247 34 34 chr4 94599676 94599852 -61030268 + CT-rich Low_complexity Low_complexity 1 176 0 1 1306 379 289 11 39 chr4 94599818 94599859 -61030261 + polypyrimidine Low_complexity Low_complexity 136 176 0 1 1306 788 86 17 0 chr4 94599859 94599976 -61030144 + (TTTC)n Simple_repeat Simple_repeat 4 122 0 1 1306 379 304 21 20 chr4 94599976 94600225 -61029895 + CT-rich Low_complexity Low_complexity 1 249 0 1 1306 258 353 6 19 chr4 94600257 94600413 -61029707 + CT-rich Low_complexity Low_complexity 2 155 0 1 1306 317 327 77 39 chr4 94600465 94600621 -61029499 - HAL1-3A_ME LINE L1 -421 2437 2276 1 1306 37 23 0 0 chr4 94600782 94600826 -61029294 + AT_rich Low_complexity Low_complexity 1 44 0 1 1306 1342 95 28 6 chr4 94601058 94601238 -61028882 + B2_Mm2 SINE B2 4 187 -8 1 1306 1114 180 72 0 chr4 94602112 94602334 -61027786 + RLTR16 LTR ERVK 1 238 -267 1 1306 182 107 53 18 chr4 94602421 94602478 -61027642 + GA-rich Low_complexity Low_complexity 2 60 0 1 1306 207 0 0 0 chr4 94602960 94602983 -61027137 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1306 260 321 60 0 chr4 94603100 94603184 -61026936 + B4A SINE B4 86 174 -118 1 1306 228 302 111 30 chr4 94603107 94603206 -61026914 + PB1D7 SINE Alu 8 114 -6 1 1306 371 22 0 0 chr4 94603214 94603259 -61026861 + B1_Mus1 SINE Alu 1 45 -103 1 1306 1016 176 68 0 chr4 94603256 94603461 -61026659 + RLTR16 LTR ERVK 239 457 -48 1 1306 273 222 12 132 chr4 94603899 94603982 -61026138 + RMER16 LTR ERVK 1 73 -460 1 1306 4003 178 83 14 chr4 94604037 94604426 -61025694 - Lx5 LINE L1 -593 6457 6025 1 1306 393 22 0 0 chr4 94604426 94604472 -61025648 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 1 1306 4319 149 31 7 chr4 94604472 94605324 -61024796 - Lx5 LINE L1 -1026 6024 5156 1 1306 4149 65 0 4 chr4 94605984 94606482 -61023638 + L1_Mus1 LINE L1 6071 6566 -1 1 1306 230 277 0 21 chr4 94606539 94606587 -61023533 - RSINE1 SINE B4 0 165 119 1 1306 2981 99 41 25 chr4 94607841 94608352 -61021768 + RMER17B LTR ERVK 1 559 -347 1 1306 1317 204 102 31 chr4 94608367 94608691 -61021429 + ORR1D1 LTR MaLR 25 371 -3 1 1306 1188 54 0 75 chr4 94609227 94609386 -61020734 - B1_Mus2 SINE Alu 0 147 1 1 1306 503 188 16 111 chr4 94609420 94609546 -61020574 - PB1D9 SINE Alu 0 120 7 1 1306 336 239 21 74 chr4 94609465 94609560 -61020560 - MT2B2 LTR ERVL -340 244 155 1 1306 350 288 97 10 chr4 94610908 94611115 -61019005 + ORSL DNA Tip100 29 253 -22 1 1306 321 93 0 0 chr4 94611458 94611512 -61018608 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1306 255 61 0 0 chr4 94612659 94612692 -61017428 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1306 189 0 0 0 chr4 94613285 94613306 -61016814 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1306 197 278 109 34 chr4 94615842 94615961 -61014159 - MIR SINE MIR -77 185 58 1 1306 30 0 0 0 chr4 94616452 94616482 -61013638 + AT_rich Low_complexity Low_complexity 1 30 0 1 1306 2386 60 119 11 chr4 94617097 94617449 -61012671 + RLTR10 LTR ERVK 1 390 0 1 1306 436 298 133 85 chr4 94617936 94618207 -61011913 + B4A SINE B4 3 286 -6 1 1306 288 342 24 79 chr4 94618281 94618408 -61011712 + PB1D7 SINE Alu 1 120 0 1 1306 207 0 0 0 chr4 94618651 94618674 -61011446 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1306 194 128 43 0 chr4 94620117 94620164 -61009956 + A-rich Low_complexity Low_complexity 4 52 0 1 1306 422 223 17 43 chr4 94620939 94621056 -61009064 + PB1D9 SINE Alu 2 115 -5 1 1306 22 0 0 0 chr4 94621290 94621312 -61008808 + AT_rich Low_complexity Low_complexity 1 22 0 1 1306 606 275 34 0 chr4 94621327 94621476 -61008644 - B3 SINE B2 -5 211 58 1 1306 629 255 75 0 chr4 94621740 94621940 -61008180 + B3 SINE B2 2 216 0 1 1306 187 264 95 42 chr4 94622518 94622613 -61007507 + L3 LINE CR1 3698 3797 -692 1 1306 25 0 0 0 chr4 94623276 94623301 -61006819 + AT_rich Low_complexity Low_complexity 1 25 0 1 1306 356 320 177 39 chr4 94623319 94623572 -61006548 + B4 SINE B4 3 290 -2 1 1306 298 214 43 0 chr4 94624168 94624238 -61005882 + ID4 SINE ID 2 74 -9 1 1306 264 325 35 9 chr4 94624286 94624401 -61005719 + MIR SINE MIR 62 179 -83 1 1306 200 367 93 16 chr4 94624438 94624621 -61005499 + L2c LINE L2 2965 3161 -226 1 1306 432 37 0 0 chr4 94625282 94625336 -61004784 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1306 541 237 17 0 chr4 94626445 94626563 -61003557 - PB1D9 SINE Alu 0 120 1 1 1306 815 234 75 0 chr4 94626591 94626792 -61003328 - B3 SINE B2 0 216 1 1 1306 569 269 76 0 chr4 94627732 94627877 -61002243 - RSINE1 SINE B4 -8 157 2 1 1306 23 33 0 0 chr4 94628593 94628623 -61001497 + AT_rich Low_complexity Low_complexity 1 30 0 1 1306 22 0 0 0 chr4 94629026 94629048 -61001072 + AT_rich Low_complexity Low_complexity 1 22 0 1 1306 185 396 46 19 chr4 94629397 94629505 -61000615 - L2a LINE L2 -18 3408 3298 1 1306 310 302 93 62 chr4 94630745 94630971 -60999149 + MIRc SINE MIR 27 259 -9 1 1306 338 229 0 10 chr4 94633151 94633248 -60996872 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 1306 305 256 0 0 chr4 94633252 94633338 -60996782 - Lx7 LINE L1 -1939 5757 5672 1 1306 859 233 30 25 chr4 94633438 94633636 -60996484 + B3 SINE B2 2 200 -16 1 1307 346 254 142 40 chr4 94634140 94634288 -60995832 + RSINE1 SINE B4 3 165 0 1 1307 302 294 122 47 chr4 94634345 94634452 -60995668 + PB1D10 SINE Alu 1 115 -2 1 1307 474 65 0 0 chr4 94634883 94634945 -60995175 + (CCTA)n Simple_repeat Simple_repeat 1 62 0 1 1307 22 0 0 0 chr4 94634968 94634990 -60995130 + AT_rich Low_complexity Low_complexity 1 22 0 1 1307 918 149 18 24 chr4 94635849 94636014 -60994106 - URR1B DNA MER1_type -14 211 48 1 1307 422 259 93 17 chr4 94636526 94636644 -60993476 - B1_Mus2 SINE Alu -4 143 17 1 1307 454 217 34 116 chr4 94637031 94637177 -60992943 + B3A SINE B2 61 194 -4 1 1307 602 283 42 66 chr4 94638022 94638177 -60991943 + MER33 DNA MER1_type 2 150 -174 1 1307 771 284 60 35 chr4 94638177 94638462 -60991658 + B4A SINE B4 1 292 0 1 1307 602 279 45 71 chr4 94638462 94638628 -60991492 + MER33 DNA MER1_type 151 301 -23 1 1307 594 213 207 0 chr4 94638758 94638932 -60991188 + B3 SINE B2 6 215 -1 1 1307 539 300 133 63 chr4 94640079 94640474 -60989646 + L2b LINE L2 2337 2764 -655 1 1307 1142 68 0 0 chr4 94640474 94640621 -60989499 - B1_Mus2 SINE Alu 0 147 1 1 1307 539 300 133 63 chr4 94640621 94640655 -60989465 + L2b LINE L2 2765 2796 -623 1 1307 184 402 37 0 chr4 94640750 94640857 -60989263 + L2b LINE L2 3032 3142 -233 1 1307 1176 62 7 0 chr4 94641225 94641371 -60988749 - B1_Mus1 SINE Alu 0 148 2 1 1307 1090 103 7 0 chr4 94641411 94641557 -60988563 - B1_Mus2 SINE Alu 0 147 1 1 1307 183 80 0 0 chr4 94641568 94641593 -60988527 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1307 1271 41 0 0 chr4 94641595 94641742 -60988378 - B1_Mus1 SINE Alu 0 148 2 1 1307 342 0 0 0 chr4 94642165 94642203 -60987917 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1307 247 250 211 24 chr4 94642629 94642752 -60987368 + L2a LINE L2 3281 3426 0 1 1307 358 285 112 28 chr4 94642806 94642926 -60987194 + ID_B1 SINE B4 78 190 -34 1 1307 609 14 0 0 chr4 94643793 94643863 -60986257 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 1 1307 251 198 32 32 chr4 94643878 94643972 -60986148 + GA-rich Low_complexity Low_complexity 5 98 0 1 1307 1602 218 56 44 chr4 94643972 94644400 -60985720 - RMER10A LTR ERVL -9 433 1 1 1307 214 376 60 65 chr4 94645136 94645335 -60984785 - MIRb SINE MIR -46 222 25 1 1307 209 179 0 0 chr4 94645803 94645842 -60984278 + G-rich Low_complexity Low_complexity 3 41 0 1 1307 183 375 77 0 chr4 94646083 94646187 -60983933 - MIRc SINE MIR -74 194 83 1 1307 220 323 112 20 chr4 94646358 94646456 -60983664 + L2b LINE L2 3242 3348 -27 1 1307 1146 82 0 0 chr4 94646516 94646662 -60983458 - B1_Mus2 SINE Alu 0 147 2 1 1307 694 290 86 73 chr4 94648160 94648762 -60981358 + L1MEc LINE L1 563 1172 -5228 1 1307 370 296 109 18 chr4 94648804 94648969 -60981151 + L1MEc LINE L1 1276 1455 -4945 1 1307 443 234 0 43 chr4 94649130 94649246 -60980874 - PB1D10 SINE Alu -2 115 5 1 1307 1130 58 0 0 chr4 94649306 94649445 -60980675 + B1_Mm SINE Alu 3 141 -6 1 1307 25 0 0 28 chr4 94649449 94649468 -60980652 + AT_rich Low_complexity Low_complexity 1 19 0 1 1307 865 132 32 75 chr4 94649468 94649656 -60980464 + B2_Mm2 SINE B2 2 181 -14 1 1307 25 0 0 28 chr4 94649656 94649672 -60980448 + AT_rich Low_complexity Low_complexity 1 16 0 1 1307 5694 73 18 8 chr4 94649766 94650678 -60979442 + L1VL4 LINE L1 406 1321 -2238 1 1307 1096 103 0 0 chr4 94650678 94650823 -60979297 + B1_Mm SINE Alu 1 145 -2 1 1307 321 26 0 0 chr4 94650823 94650861 -60979259 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1307 5694 70 32 16 chr4 94650861 94651288 -60978832 + L1VL4 LINE L1 1322 1762 -1797 1 1307 6631 101 68 6 chr4 94651287 94652790 -60977330 + Lx2 LINE L1 5339 6654 0 1 1307 252 0 0 0 chr4 94652834 94652862 -60977258 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1307 899 261 82 8 chr4 94652892 94652955 -60977165 - B4A SINE B4 -18 274 212 1 1307 360 64 0 0 chr4 94652955 94653002 -60977118 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1307 899 261 82 8 chr4 94653002 94653193 -60976927 - B4A SINE B4 -81 211 1 1 1307 255 190 0 0 chr4 94653327 94653385 -60976735 + (ATG)n Simple_repeat Simple_repeat 2 59 0 1 1307 2698 162 70 2 chr4 94653445 94653927 -60976193 + MT2A LTR ERVL 18 532 -1 1 1307 259 269 156 9 chr4 94654959 94655068 -60975052 - MIRb SINE MIR -18 250 126 1 1307 364 295 120 42 chr4 94655157 94655348 -60974772 - MLT1K LTR MaLR -383 212 7 2 1307 275 271 10 100 chr4 94655382 94655525 -60974595 + MIR SINE MIR 65 198 -10 2 1307 316 291 0 103 chr4 94655723 94655888 -60974232 - Charlie8 DNA MER1_type -2196 232 85 2 1307 270 0 0 0 chr4 94656121 94656151 -60973969 + (CTAA)n Simple_repeat Simple_repeat 2 31 0 2 1307 25 65 0 0 chr4 94656212 94656258 -60973862 + AT_rich Low_complexity Low_complexity 1 46 0 2 1307 234 143 0 0 chr4 94656267 94656316 -60973804 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 2 1307 543 299 7 7 chr4 94656323 94656458 -60973662 - RSINE1 SINE B4 -29 136 2 2 1307 760 296 50 85 chr4 94656518 94656889 -60973231 + L1MB3 LINE L1 5482 5842 -341 2 1307 1109 134 32 11 chr4 94656889 94657077 -60973043 - B2_Mm2 SINE B2 -3 192 1 2 1307 760 296 50 85 chr4 94657077 94657425 -60972695 + L1MB3 LINE L1 5843 6176 -7 2 1307 1828 195 29 153 chr4 94657442 94658102 -60972018 + Lx7 LINE L1 7119 7696 0 2 1307 247 257 37 73 chr4 94660035 94660144 -60969976 + LTR16E2 LTR ERVL 460 564 -4 2 1307 183 299 25 25 chr4 94660152 94660231 -60969889 - L2b LINE L2 -248 3127 3049 2 1307 211 75 94 0 chr4 94660544 94660597 -60969523 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1307 1595 199 26 32 chr4 94661176 94661555 -60968565 + ORR1C2 LTR MaLR 5 381 -3 2 1307 316 307 24 102 chr4 94662549 94662676 -60967444 - PB1D10 SINE Alu 0 117 1 2 1307 279 0 0 0 chr4 94662891 94662922 -60967198 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1307 800 295 35 116 chr4 94662922 94663242 -60966878 - Tigger7 DNA MER2_type -2082 409 98 2 1307 1341 67 0 40 chr4 94663242 94663359 -60966761 + L1_Mus4 LINE L1 6438 6547 -89 2 1307 1754 137 85 0 chr4 94663359 94663665 -60966455 - IAPEY3_LTR LTR ERVK 0 332 1 2 1307 1341 67 0 40 chr4 94663665 94663748 -60966372 + L1_Mus4 LINE L1 6548 6630 -6 2 1307 800 295 35 116 chr4 94663748 94663849 -60966271 - Tigger7 DNA MER2_type -2394 97 23 2 1307 1544 186 100 6 chr4 94664007 94664337 -60965783 - MTD LTR MaLR -58 361 1 2 1307 185 288 83 83 chr4 94664698 94664819 -60965301 + MIRm SINE MIR 27 147 -129 2 1307 558 333 91 54 chr4 94665920 94666348 -60963772 - MLT1H1 LTR MaLR -134 457 1 2 1307 294 308 132 42 chr4 94666414 94666604 -60963516 - MIRb SINE MIR -59 209 3 2 1307 776 283 31 78 chr4 94666752 94667009 -60963111 - ORR1E LTR MaLR -10 349 105 2 1307 488 268 51 17 chr4 94668642 94668817 -60961303 - Tigger7 DNA MER2_type -25 2466 2286 2 1307 543 303 0 8 chr4 94669829 94669962 -60960158 - B1F SINE Alu -12 137 6 2 1307 1237 28 7 0 chr4 94670200 94670343 -60959777 + B1_Mus1 SINE Alu 5 148 0 2 1307 333 0 0 0 chr4 94670354 94670391 -60959729 + (CCA)n Simple_repeat Simple_repeat 1 37 0 2 1307 225 0 0 0 chr4 94670391 94670416 -60959704 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 1307 448 304 19 6 chr4 94670876 94671038 -60959082 + MLT1B LTR MaLR 1 164 -226 2 1307 625 252 14 0 chr4 94671073 94671216 -60958904 + MLT1B LTR MaLR 246 390 0 2 1307 546 16 0 0 chr4 94671712 94671775 -60958345 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1307 243 125 0 0 chr4 94671930 94671970 -60958150 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1307 26 0 0 0 chr4 94672640 94672666 -60957454 + AT_rich Low_complexity Low_complexity 1 26 0 2 1307 279 294 47 0 chr4 94672803 94672888 -60957232 + PB1D10 SINE Alu 1 89 -28 2 1307 263 305 67 0 chr4 94672808 94672913 -60957207 + ID_B1 SINE B4 87 198 -26 2 1307 282 282 0 0 chr4 94672992 94673063 -60957057 + ID4_ SINE ID 7 77 -6 2 1307 1247 41 0 0 chr4 94673188 94673334 -60956786 + B1_Mus2 SINE Alu 2 147 0 2 1307 327 150 0 0 chr4 94673335 94673395 -60956725 + (A)n Simple_repeat Simple_repeat 1 60 0 2 1307 1209 174 116 11 chr4 94674097 94674365 -60955755 + Lx9 LINE L1 7349 7644 0 2 1307 216 329 0 12 chr4 94674580 94674660 -60955460 + MIR SINE MIR 99 177 -85 2 1307 180 313 82 24 chr4 94675613 94675698 -60954422 - MIR SINE MIR -76 132 43 2 1307 233 260 122 28 chr4 94676111 94676218 -60953902 - L2c LINE L2 -3 3384 3268 2 1307 1366 241 80 40 chr4 94677024 94677500 -60952620 + RMER20A LTR ERVK 21 515 -1 2 1307 243 311 120 84 chr4 94677695 94677969 -60952151 - L3 LINE CR1 -160 4329 4046 2 1307 1749 154 81 39 chr4 94678115 94678473 -60951647 + ORR1D1 LTR MaLR 1 373 -1 2 1307 3679 17 0 0 chr4 94678474 94678887 -60951233 + L1Md_A LINE L1 6170 6582 0 2 1307 6324 214 32 3 chr4 94678913 94680244 -60949876 + ORR1D1-int LTR MaLR 1 1370 0 2 1307 605 257 143 118 chr4 94680244 94680461 -60949659 + ORR1D1 LTR MaLR 1 208 -166 2 1307 531 0 0 0 chr4 94680461 94680520 -60949600 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 2 1307 605 257 143 118 chr4 94680520 94680659 -60949461 + ORR1D1 LTR MaLR 209 366 -8 2 1307 954 214 48 43 chr4 94680886 94681096 -60949024 - B3 SINE B2 -5 211 1 2 1307 32 57 0 0 chr4 94681313 94681366 -60948754 + AT_rich Low_complexity Low_complexity 1 53 0 2 1307 222 100 0 0 chr4 94681448 94681478 -60948642 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1307 396 130 0 0 chr4 94681478 94681547 -60948573 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1307 23 0 0 0 chr4 94681782 94681805 -60948315 + AT_rich Low_complexity Low_complexity 1 23 0 2 1307 643 289 19 33 chr4 94682889 94683100 -60947020 + B3 SINE B2 9 216 0 2 1307 583 235 15 0 chr4 94683120 94683241 -60946879 + B4A SINE B4 108 230 -62 2 1307 751 200 0 0 chr4 94683241 94683371 -60946749 + RSINE1 SINE B4 3 132 -33 2 1307 384 88 0 0 chr4 94683381 94683438 -60946682 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1307 279 0 0 0 chr4 94683438 94683468 -60946652 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1307 212 86 29 0 chr4 94683477 94683512 -60946608 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2 1307 312 253 13 0 chr4 94683523 94683598 -60946522 + B4A SINE B4 216 291 -1 2 1307 261 0 0 0 chr4 94683622 94683651 -60946469 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1307 813 79 0 0 chr4 94683776 94683903 -60946217 + (TC)n Simple_repeat Simple_repeat 2 128 0 2 1307 946 173 24 48 chr4 94683905 94684111 -60946009 + ORR1C1 LTR MaLR 178 378 0 2 1307 291 309 12 0 chr4 94685598 94685682 -60944438 - PB1 SINE Alu -19 108 24 2 1307 611 257 29 12 chr4 94685713 94685886 -60944234 - L1MA6 LINE L1 -1 6299 6124 2 1307 1432 200 35 65 chr4 94685895 94686275 -60943845 - Lx7 LINE L1 0 7696 7074 2 1307 833 76 8 0 chr4 94686410 94686528 -60943592 + (TC)n Simple_repeat Simple_repeat 2 120 0 2 1307 381 317 35 23 chr4 94686554 94686725 -60943395 - L1MA6 LINE L1 -390 5913 5741 2 1307 279 344 78 23 chr4 94687608 94687825 -60942295 + MIR SINE MIR 34 262 0 2 1307 240 177 88 9 chr4 94688312 94688426 -60941694 + RMER17D LTR ERVK 385 507 -382 2 1307 279 244 60 37 chr4 94689746 94689890 -60940230 + MIRc SINE MIR 45 196 -80 2 1307 241 318 79 75 chr4 94690447 94690688 -60939432 - MIRm SINE MIR 0 276 35 2 1307 344 348 63 14 chr4 94690708 94690851 -60939269 - MLT1A1 LTR MaLR 0 408 259 2 1307 192 284 67 22 chr4 94691380 94691470 -60938650 + MIR3 SINE MIR 104 197 -11 2 1307 229 383 17 9 chr4 94693632 94693748 -60936372 + MIRb SINE MIR 7 123 -145 2 1307 603 301 14 0 chr4 94695029 94695172 -60934948 + RSINE1 SINE B4 3 147 -18 2 1307 376 307 56 56 chr4 94695270 94695484 -60934636 - B3 SINE B2 0 216 3 2 1307 22 0 0 0 chr4 94695731 94695753 -60934367 + AT_rich Low_complexity Low_complexity 1 22 0 2 1307 357 159 0 0 chr4 94696338 94696401 -60933719 + (CAT)n Simple_repeat Simple_repeat 2 64 0 2 1307 510 223 10 0 chr4 94696402 94696505 -60933615 - B1_Mur4 SINE Alu -8 142 39 2 1307 453 189 0 0 chr4 94697519 94697614 -60932506 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 2 1307 324 414 0 19 chr4 94697669 94697829 -60932291 + MER91A DNA Tip100 17 173 -23 2 1307 271 316 32 9 chr4 94698328 94698460 -60931660 + MIRm SINE MIR 53 189 -79 2 1307 1192 68 0 0 chr4 94698826 94698972 -60931148 - B1_Mus1 SINE Alu -1 147 2 2 1307 216 158 0 0 chr4 94699127 94699165 -60930955 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1307 1305 107 11 5 chr4 94699917 94700105 -60930015 - B2_Mm1t SINE B2 -3 190 2 2 1307 622 251 88 135 chr4 94701150 94701536 -60928584 - MTE2a LTR MaLR -2 377 10 2 1307 228 257 57 0 chr4 94701636 94701706 -60928414 + MTEb LTR MaLR 296 369 -10 2 1307 201 186 23 0 chr4 94702198 94702241 -60927879 + L2b LINE L2 3107 3150 -225 2 1307 338 91 0 18 chr4 94702690 94702746 -60927374 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1307 1173 266 34 55 chr4 94702846 94703231 -60926889 - MTEa LTR MaLR -2 377 1 2 1307 329 339 8 16 chr4 94704207 94704330 -60925790 - MIRb SINE MIR -36 232 111 2 1307 495 0 0 0 chr4 94705049 94705104 -60925016 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1307 375 339 17 34 chr4 94705186 94705363 -60924757 - MIRb SINE MIR -78 190 17 2 1307 465 99 0 0 chr4 94705655 94705736 -60924384 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 2 1307 269 371 49 70 chr4 94706668 94707013 -60923107 - MLT1I LTR MaLR -7 404 67 2 1307 1032 163 103 5 chr4 94708554 94708664 -60921456 - Lx2 LINE L1 0 6997 6889 2 1307 180 77 0 0 chr4 94708664 94708690 -60921430 + (CCCA)n Simple_repeat Simple_repeat 4 29 0 2 1307 1032 163 103 5 chr4 94708690 94708782 -60921338 - Lx2 LINE L1 -109 6888 6777 2 1307 7297 112 20 6 chr4 94708780 94710147 -60919973 - Lx2 LINE L1 -352 6645 5262 2 1307 6529 83 6 9 chr4 94710146 94711720 -60918400 - L1VL4 LINE L1 -1805 1754 186 2 1307 183 354 37 0 chr4 94711742 94711824 -60918296 + L2a LINE L2 3302 3386 -40 2 1307 186 353 14 14 chr4 94713754 94713823 -60916297 - L2b LINE L2 -20 3355 3287 2 1307 427 334 7 13 chr4 94713979 94714140 -60915980 - MTD LTR MaLR 0 421 268 2 1307 21 0 0 0 chr4 94716437 94716458 -60913662 + AT_rich Low_complexity Low_complexity 1 21 0 2 1307 203 167 0 0 chr4 94717324 94717366 -60912754 + (CTG)n Simple_repeat Simple_repeat 3 44 0 3 1307 198 103 0 0 chr4 94718813 94718842 -60911278 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 3 1307 219 69 0 0 chr4 94719416 94719445 -60910675 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1307 187 359 13 0 chr4 94720182 94720260 -60909860 + MIRb SINE MIR 100 178 -90 3 1307 288 0 0 0 chr4 94720749 94720781 -60909339 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1307 271 340 65 20 chr4 94720851 94721004 -60909116 - MIRb SINE MIR -31 237 78 3 1307 285 51 0 0 chr4 94721329 94721368 -60908752 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1307 349 262 82 0 chr4 94721549 94721662 -60908458 - MLT1I LTR MaLR -208 203 82 3 1307 407 183 161 0 chr4 94722367 94722460 -60907660 - PB1D10 SINE Alu 0 117 10 3 1307 788 157 7 0 chr4 94722564 94722711 -60907409 + C-rich Low_complexity Low_complexity 4 151 0 3 1307 302 311 34 88 chr4 94723146 94723294 -60906826 + RMER15 LTR ERVL 346 485 -90 3 1307 429 395 87 34 chr4 94723565 94723921 -60906199 - MLT1I LTR MaLR -6 405 31 3 1307 592 244 0 0 chr4 94724328 94724443 -60905677 + RSINE1 SINE B4 11 125 -40 3 1307 252 0 0 0 chr4 94724443 94724471 -60905649 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1307 201 74 0 0 chr4 94724475 94724502 -60905618 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3 1307 188 265 45 67 chr4 94724523 94724612 -60905508 + L2c LINE L2 3104 3190 -197 3 1307 506 371 99 25 chr4 94725071 94725436 -60904684 - MLT1I LTR MaLR -19 392 1 3 1307 201 211 12 106 chr4 94725539 94725624 -60904496 - L3 LINE CR1 -311 4178 4102 3 1307 558 226 17 42 chr4 94728987 94729107 -60901013 + B1F1 SINE Alu 3 119 -1 3 1307 405 152 0 0 chr4 94729347 94729406 -60900714 + 5S rRNA rRNA 13 71 -50 3 1307 517 269 126 7 chr4 94730690 94730853 -60899267 + B3 SINE B2 2 177 -16 3 1307 407 194 11 0 chr4 94730902 94730995 -60899125 + GA-rich Low_complexity Low_complexity 1 94 0 3 1307 565 58 23 0 chr4 94731570 94731656 -60898464 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1307 234 258 54 43 chr4 94731669 94731762 -60898358 - Tigger9a DNA Tigger -23 709 616 3 1307 442 285 30 42 chr4 94732181 94732346 -60897774 + RNLTR23 LTR ERVK 480 642 0 3 1307 207 0 0 0 chr4 94732489 94732512 -60897608 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 3 1307 217 205 0 0 chr4 94734933 94734972 -60895148 + (TGG)n Simple_repeat Simple_repeat 2 40 0 3 1307 473 296 44 16 chr4 94734979 94735141 -60894979 - MIRb SINE MIR -80 188 17 3 1307 189 0 0 0 chr4 94736103 94736124 -60893996 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1307 348 24 0 0 chr4 94736124 94736165 -60893955 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1307 480 227 74 30 chr4 94736601 94736766 -60893354 + MIRb SINE MIR 1 169 -93 3 1307 210 302 63 0 chr4 94736768 94736831 -60893289 + L2c LINE L2 3273 3339 -48 3 1307 358 319 25 25 chr4 94736852 94736974 -60893146 + MIRb SINE MIR 33 154 -114 3 1307 1016 45 15 0 chr4 94737686 94737819 -60892301 + (TCTCC)n Simple_repeat Simple_repeat 5 139 0 3 1307 722 201 28 0 chr4 94737856 94738000 -60892120 - B1_Mur3 SINE Alu 0 149 2 3 1307 340 326 140 25 chr4 94738107 94738393 -60891727 + L2a LINE L2 2967 3285 -141 3 1307 187 214 0 23 chr4 94738517 94738560 -60891560 + MIRm SINE MIR 217 258 -18 3 1307 619 310 69 69 chr4 94738766 94739099 -60891021 - MLT1B LTR MaLR -16 374 42 3 1307 281 148 18 18 chr4 94739802 94739857 -60890263 - MTD LTR MaLR -300 119 65 3 1307 224 241 0 0 chr4 94740343 94740397 -60889723 + T-rich Low_complexity Low_complexity 1 54 0 3 1307 1424 223 115 24 chr4 94740502 94740884 -60889236 - MTD LTR MaLR 0 419 3 3 1307 216 327 26 78 chr4 94742752 94742868 -60887252 + MIRm SINE MIR 38 147 -129 3 1307 186 43 0 0 chr4 94744016 94744039 -60886081 + (TGG)n Simple_repeat Simple_repeat 2 24 0 3 1307 374 309 68 77 chr4 94744067 94744264 -60885856 + MIR SINE MIR 24 208 -54 3 1307 319 324 62 13 chr4 94744462 94744627 -60885493 - MIRb SINE MIR -28 234 60 3 1307 187 115 0 0 chr4 94744776 94744802 -60885318 + MIRm SINE MIR 230 255 -21 3 1307 21 36 0 0 chr4 94745236 94745264 -60884856 + AT_rich Low_complexity Low_complexity 1 28 0 3 1307 643 235 73 0 chr4 94746430 94746566 -60883554 + RSINE1 SINE B4 4 149 -16 3 1307 504 175 24 0 chr4 94746858 94746984 -60883136 + CT-rich Low_complexity Low_complexity 4 132 0 3 1307 351 0 0 0 chr4 94747006 94747045 -60883075 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 3 1307 192 19 73 55 chr4 94747253 94747308 -60882812 + (TTG)n Simple_repeat Simple_repeat 2 57 0 3 1307 335 267 11 22 chr4 94747336 94747428 -60882692 + PB1D10 SINE Alu 27 117 0 3 1307 507 216 33 41 chr4 94747528 94747649 -60882471 - B1F SINE Alu -21 128 9 3 1307 186 329 40 0 chr4 94747893 94747969 -60882151 + MIRc SINE MIR 107 185 -83 3 1307 236 304 0 0 chr4 94750021 94750077 -60880043 + MIR SINE MIR 202 257 -5 3 1307 209 222 31 31 chr4 94750148 94750213 -60879907 + L2c LINE L2 3280 3344 -43 3 1307 262 339 105 11 chr4 94750305 94750437 -60879683 + MIRc SINE MIR 2 143 -125 3 1307 398 20 0 19 chr4 94750437 94750489 -60879631 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1307 262 339 105 11 chr4 94750489 94750547 -60879573 + MIRc SINE MIR 144 210 -58 3 1307 821 244 58 102 chr4 94750591 94750982 -60879138 + ORR1E LTR MaLR 1 379 0 3 1307 222 62 0 0 chr4 94751314 94751346 -60878774 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1307 2028 160 45 31 chr4 94751480 94751861 -60878259 - ORR1B1 LTR MaLR -8 386 1 3 1307 371 377 58 32 chr4 94752252 94752529 -60877591 + L1M5 LINE L1 2898 3181 -2965 3 1307 275 26 0 49 chr4 94752593 94752634 -60877486 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 3 1307 1013 276 69 33 chr4 94753154 94753514 -60876606 + MTEb LTR MaLR 1 373 -6 3 1307 2828 159 25 23 chr4 94753641 94754167 -60875953 - RLTR11A2 LTR ERVK 0 527 1 3 1307 540 0 0 0 chr4 94754342 94754402 -60875718 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1307 299 250 0 0 chr4 94754746 94754810 -60875310 - ID4_ SINE ID -19 64 1 3 1307 909 207 35 84 chr4 94755066 94755293 -60874827 - B3 SINE B2 0 216 1 3 1307 250 176 137 0 chr4 94755397 94755448 -60874672 + ZP3AR Satellite Satellite 28 85 -127 3 1307 676 232 16 58 chr4 94755406 94755594 -60874526 + ID_B1 SINE B4 2 181 -43 3 1307 452 254 151 0 chr4 94755496 94755622 -60874498 + B1F1 SINE Alu 5 149 0 3 1307 2437 125 2 67 chr4 94755993 94756397 -60873723 - ORR1C1 LTR MaLR 0 378 1 3 1307 563 229 95 0 chr4 94756413 94756518 -60873602 + MTE-int LTR MaLR 899 1013 -567 3 1307 613 229 434 0 chr4 94756574 94756816 -60873304 + MTEa LTR MaLR 26 372 -7 3 1307 190 281 63 58 chr4 94756950 94757063 -60873057 + MIRc SINE MIR 43 168 -100 3 1307 1660 208 48 14 chr4 94757381 94757752 -60872368 - ORR1C2 LTR MaLR 0 384 1 3 1307 645 14 0 0 chr4 94760945 94761019 -60869101 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1307 315 0 0 0 chr4 94761019 94761053 -60869067 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1307 470 287 86 28 chr4 94761141 94761375 -60868745 + MIRb SINE MIR 10 260 -8 3 1307 208 77 0 49 chr4 94761486 94761527 -60868593 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 3 1307 262 313 94 47 chr4 94761545 94761736 -60868384 - L3 LINE CR1 -660 3829 3630 3 1307 241 294 53 35 chr4 94761910 94762023 -60868097 + MIRb SINE MIR 108 222 -46 3 1307 388 349 84 66 chr4 94762659 94763039 -60867081 + MLT2B3 LTR ERVL 167 553 -1 3 1307 289 273 173 8 chr4 94763040 94763173 -60866947 - LTR40b LTR ERVL -249 213 59 3 1307 262 48 0 0 chr4 94764107 94764149 -60865971 + L1Md_F3 LINE L1 6529 6570 -14 3 1307 196 351 52 0 chr4 94764190 94764267 -60865853 + MIR SINE MIR 165 245 -17 3 1307 265 282 25 114 chr4 94764282 94764464 -60865656 + MIRb SINE MIR 40 210 -58 3 1308 345 326 124 44 chr4 94766504 94766777 -60863343 - MLT1C LTR MaLR -116 351 57 3 1308 955 323 66 47 chr4 94767195 94767762 -60862358 + MLT2B4 LTR ERVL 167 717 0 3 1308 293 307 10 29 chr4 94767803 94767907 -60862213 - MIRc SINE MIR -49 219 118 3 1308 241 369 99 15 chr4 94768639 94768840 -60861280 + MIRb SINE MIR 35 252 -16 3 1308 217 261 28 42 chr4 94769000 94769072 -60861048 + MIRb SINE MIR 104 174 -94 3 1308 189 0 0 0 chr4 94769176 94769197 -60860923 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1308 549 227 84 0 chr4 94769309 94769428 -60860692 + B1F2 SINE Alu 1 129 -20 3 1308 238 270 65 43 chr4 94769579 94769672 -60860448 - ID_B1 SINE B4 -9 215 121 3 1308 225 254 79 157 chr4 94769672 94769719 -60860401 - B1F SINE Alu -9 140 12 3 1308 390 147 0 0 chr4 94770864 94770932 -60859188 + (TCC)n Simple_repeat Simple_repeat 2 69 0 3 1308 290 329 87 7 chr4 94771018 94771156 -60858964 - B1F SINE Alu 0 149 1 3 1308 287 301 6 8 chr4 94771307 94771413 -60858707 - MIR SINE MIR -77 131 26 3 1308 426 85 0 0 chr4 94771502 94771561 -60858559 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1308 262 253 131 80 chr4 94771598 94771774 -60858346 - Lx8 LINE L1 -48 7425 7241 3 1308 1157 89 0 11 chr4 94772432 94772614 -60857506 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1308 219 304 83 53 chr4 94773486 94773618 -60856502 - MIR SINE MIR -46 216 81 4 1308 767 144 6 28 chr4 94773966 94774145 -60855975 + CT-rich Low_complexity Low_complexity 1 175 0 4 1308 293 314 58 76 chr4 94774188 94774412 -60855708 + MER121 Unknown Unknown 58 277 -135 4 1308 315 0 0 0 chr4 94774992 94775027 -60855093 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1308 214 264 157 22 chr4 94776273 94776362 -60853758 + MIRm SINE MIR 165 265 -11 4 1308 895 109 14 0 chr4 94776362 94776509 -60853611 + (TA)n Simple_repeat Simple_repeat 2 150 0 4 1308 366 316 10 10 chr4 94777484 94777583 -60852537 + B4 SINE B4 5 103 -189 4 1308 1739 141 0 0 chr4 94777583 94777831 -60852289 + L1_Mus1 LINE L1 233 480 -6158 4 1308 32353 76 34 6 chr4 94777831 94783621 -60846499 + L1_Mus1 LINE L1 606 6567 0 4 1308 468 272 88 47 chr4 94783644 94783814 -60846306 + B4 SINE B4 95 271 -21 4 1308 288 0 0 0 chr4 94783822 94783854 -60846266 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1308 232 219 125 26 chr4 94784290 94784400 -60845720 + MIR3 SINE MIR 7 121 -155 4 1308 2187 234 121 18 chr4 94784507 94785359 -60844761 + RCHARR1 DNA MER1_type 4 943 -31 4 1308 225 94 0 0 chr4 94786049 94786081 -60844039 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1308 264 339 141 30 chr4 94786280 94786478 -60843642 - LTR33 LTR ERVL -152 363 144 4 1308 444 66 0 95 chr4 94786736 94786820 -60843300 + L1Md_F2 LINE L1 6507 6582 0 4 1308 219 36 0 0 chr4 94786828 94786856 -60843264 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1308 360 0 0 0 chr4 94787393 94787433 -60842687 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1308 228 264 214 22 chr4 94789087 94789265 -60840855 - L1MA9 LINE L1 -2 6310 6099 4 1308 1605 147 227 3 chr4 94789313 94789613 -60840507 + ORR1B2 LTR MaLR 1 367 0 4 1308 509 280 105 16 chr4 94790958 94791239 -60838881 - L1M3 LINE L1 -586 5582 5280 4 1308 22 0 0 0 chr4 94791303 94791325 -60838795 + AT_rich Low_complexity Low_complexity 1 22 0 4 1308 398 191 18 41 chr4 94791375 94791544 -60838576 + GA-rich Low_complexity Low_complexity 4 168 0 4 1308 417 283 43 0 chr4 94793013 94793151 -60836969 + Charlie10 DNA MER1_type 7 150 -2672 4 1308 432 0 0 0 chr4 94793327 94793375 -60836745 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1308 261 0 0 0 chr4 94793375 94793403 -60836717 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1308 250 297 54 11 chr4 94793640 94793732 -60836388 + Kanga11a DNA Tc2 872 967 -3 4 1308 284 232 43 0 chr4 94793763 94793832 -60836288 + PB1D10 SINE Alu 43 114 -3 4 1308 459 0 0 0 chr4 94794472 94794523 -60835597 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1308 201 74 0 0 chr4 94795311 94795338 -60834782 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 4 1308 207 0 0 0 chr4 94795655 94795678 -60834442 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1308 270 200 85 43 chr4 94797406 94797500 -60832620 - Charlie14a DNA MER1_type -79 1085 988 4 1308 213 316 0 0 chr4 94797721 94797778 -60832342 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 4 1308 218 288 13 27 chr4 94798534 94798609 -60831511 + PB1D7 SINE Alu 46 119 -1 4 1308 185 91 30 0 chr4 94799446 94799479 -60830641 - L2c LINE L2 -22 3365 3332 4 1308 314 284 92 60 chr4 94799973 94800001 -60830119 - CYRA11_Mm Unknown Y-chromosome -200 417 265 4 1308 1080 157 78 10 chr4 94800001 94800207 -60829913 + URR1B DNA MER1_type 1 220 -5 4 1308 314 284 92 60 chr4 94800207 94800224 -60829896 - CYRA11_Mm Unknown Y-chromosome -200 264 159 4 1308 273 250 0 0 chr4 94801042 94801098 -60829022 - MIRb SINE MIR -6 262 207 4 1308 525 32 0 0 chr4 94802355 94802418 -60827702 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1308 257 0 0 29 chr4 94803155 94803189 -60826931 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1308 243 310 161 8 chr4 94803425 94803555 -60826565 + L2a LINE L2 3268 3417 -9 4 1308 336 268 0 0 chr4 94805370 94805452 -60824668 - L2a LINE L2 -1 3425 3344 4 1308 226 361 0 0 chr4 94805452 94805524 -60824596 - L2a LINE L2 -3 3423 3352 4 1308 254 141 184 23 chr4 94805688 94805775 -60824345 + B1F1 SINE Alu 49 149 0 4 1308 310 203 70 39 chr4 94805870 94805998 -60824122 + MER33 DNA MER1_type 91 222 -102 4 1308 228 308 110 55 chr4 94806322 94806449 -60823671 + MLT1J LTR MaLR 48 181 -331 4 1308 1076 224 182 32 chr4 94806456 94806802 -60823318 + MTD LTR MaLR 5 402 -17 4 1308 510 17 0 0 chr4 94806856 94806915 -60823205 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1308 633 256 0 36 chr4 94806920 94807086 -60823034 - B3A SINE B2 -38 160 1 4 1308 280 316 80 29 chr4 94807139 94807276 -60822844 + MLT1J LTR MaLR 299 442 -70 4 1308 464 287 21 35 chr4 94807548 94807689 -60822431 - B3 SINE B2 -7 209 71 4 1308 917 270 0 5 chr4 94808912 94809124 -60820996 - ID_B1 SINE B4 -13 211 1 4 1308 190 313 15 0 chr4 94809308 94809375 -60820745 + MIR SINE MIR 85 152 -110 4 1308 1220 41 0 0 chr4 94809513 94809660 -60820460 - B1_Mus1 SINE Alu 0 148 2 4 1308 252 0 0 0 chr4 94810673 94810701 -60819419 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1308 190 241 92 25 chr4 94813118 94813237 -60816883 + L2 LINE L2 2472 2598 -821 4 1308 237 308 22 11 chr4 94813680 94813772 -60816348 + MLT1H LTR MaLR 457 549 0 4 1308 563 303 69 5 chr4 94814180 94814274 -60815846 + RMER30 DNA MER1_type 2 106 -96 4 1308 261 0 0 0 chr4 94814274 94814303 -60815817 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1308 563 303 69 5 chr4 94814303 94814397 -60815723 + RMER30 DNA MER1_type 107 202 0 4 1308 207 348 50 31 chr4 94814495 94814655 -60815465 + MIRb SINE MIR 35 197 -71 4 1308 181 274 113 0 chr4 94815942 94816048 -60814072 - L2a LINE L2 -53 3373 3256 4 1308 1355 171 141 26 chr4 94816078 94816210 -60813910 + ORR1B2 LTR MaLR 1 151 -216 4 1308 528 16 0 0 chr4 94816210 94816271 -60813849 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1308 1355 171 141 26 chr4 94816271 94816353 -60813767 + ORR1B2 LTR MaLR 152 254 -113 4 1308 3459 30 2 0 chr4 94816353 94816748 -60813372 - MTA_Mm LTR MaLR 0 396 1 4 1308 1355 171 141 26 chr4 94816748 94816838 -60813282 + ORR1B2 LTR MaLR 255 341 -26 4 1308 237 65 0 0 chr4 94816908 94816939 -60813181 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1308 229 291 25 12 chr4 94816958 94817038 -60813082 + PB1D10 SINE Alu 37 117 0 4 1308 377 286 115 50 chr4 94817186 94817568 -60812552 - Charlie4a DNA MER1_type -35 473 67 4 1308 1315 180 14 0 chr4 94818052 94818274 -60811846 + URR1B DNA MER1_type 1 225 0 4 1308 203 116 0 44 chr4 94819369 94819414 -60810706 + GA-rich Low_complexity Low_complexity 3 45 0 4 1308 504 0 0 0 chr4 94819864 94819920 -60810200 + (TTA)n Simple_repeat Simple_repeat 2 57 0 4 1308 457 315 7 46 chr4 94819924 94820077 -60810043 - B4A SINE B4 0 292 146 4 1308 334 315 100 34 chr4 94821091 94821317 -60808803 + MIR SINE MIR 32 261 -1 4 1308 193 267 17 0 chr4 94821426 94821486 -60808634 - MIR3 SINE MIR -54 154 94 4 1308 272 277 210 11 chr4 94821877 94822063 -60808057 + Charlie5 DNA MER1_type 2399 2621 -3 4 1308 197 395 0 34 chr4 94823195 94823313 -60806807 - MIR3 SINE MIR -82 126 13 4 1308 21 0 0 0 chr4 94823385 94823406 -60806714 + AT_rich Low_complexity Low_complexity 1 21 0 4 1308 218 319 69 0 chr4 94823952 94824068 -60806052 - MIRc SINE MIR -32 236 113 4 1308 233 180 0 39 chr4 94825856 94825908 -60804212 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4 1308 980 150 3 0 chr4 94826072 94826389 -60803731 + (CCCA)n Simple_repeat Simple_repeat 1 318 0 4 1308 180 367 98 37 chr4 94826460 94826706 -60803414 - L2c LINE L2 -74 3313 3053 4 1308 292 333 52 7 chr4 94826771 94826925 -60803195 - MIR SINE MIR -89 173 13 4 1308 215 103 26 0 chr4 94827089 94827128 -60802992 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1308 218 304 63 0 chr4 94827306 94827385 -60802735 + MIRm SINE MIR 170 253 -23 4 1308 353 294 50 38 chr4 94828554 94828713 -60801407 + MIR SINE MIR 54 214 -48 4 1308 186 299 91 11 chr4 94828896 94828984 -60801136 - MIRb SINE MIR -62 206 112 4 1308 332 284 0 0 chr4 94829023 94829104 -60801016 - ID_B1 SINE B4 -1 223 143 4 1308 507 256 84 18 chr4 94829173 94829340 -60800780 - B3A SINE B2 -20 178 1 4 1308 797 282 37 36 chr4 94832973 94833284 -60796836 + ORR1E LTR MaLR 4 304 -66 4 1308 567 0 0 0 chr4 94833675 94833738 -60796382 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1308 198 315 0 0 chr4 94834387 94834441 -60795679 - L2b LINE L2 -4 3371 3318 4 1308 484 312 6 12 chr4 94834528 94834700 -60795420 - MIR SINE MIR 0 262 92 4 1308 2739 221 46 33 chr4 94835019 94835774 -60794346 + RCHARR1 DNA MER1_type 63 827 -147 4 1308 294 182 0 0 chr4 94836598 94836664 -60793456 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1308 185 338 68 49 chr4 94836744 94836906 -60793214 + MIRb SINE MIR 60 224 -44 4 1308 733 242 10 50 chr4 94837089 94837293 -60792827 - B3 SINE B2 0 216 23 4 1308 1585 209 60 9 chr4 94837331 94837678 -60792442 - ORR1D1 LTR MaLR 0 374 10 4 1308 396 0 0 0 chr4 94838186 94838230 -60791890 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1308 335 269 97 0 chr4 94838253 94838398 -60791722 + L1MEc LINE L1 124 282 -6118 4 1308 347 219 85 0 chr4 94838602 94838737 -60791383 + L1MEc LINE L1 3056 3201 -3118 4 1308 351 205 23 13 chr4 94838744 94838845 -60791275 + L1MEc LINE L1 4164 4268 -2051 4 1308 5121 85 71 4 chr4 94838909 94839633 -60790487 - Lx8 LINE L1 -1591 5882 5116 4 1308 8231 72 6 46 chr4 94839634 94840539 -60789581 + Lx3_Mus LINE L1 5877 6745 -264 4 1308 261 0 0 0 chr4 94840539 94840568 -60789552 + (CATAT)n Simple_repeat Simple_repeat 2 30 0 4 1308 8231 72 6 46 chr4 94840568 94840842 -60789278 + Lx3_Mus LINE L1 6746 7009 0 4 1308 459 0 0 0 chr4 94840913 94840964 -60789156 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1308 451 282 55 21 chr4 94840967 94841112 -60789008 - B3 SINE B2 -66 150 1 4 1308 232 258 76 0 chr4 94841167 94841233 -60788887 - Lx4B LINE L1 -6 7052 6982 5 1308 1243 173 117 8 chr4 94841235 94841491 -60788629 - Lx2B LINE L1 -194 6806 6523 5 1308 2416 209 50 4 chr4 94841487 94841991 -60788129 + Lx4B LINE L1 5978 6504 -554 5 1308 3584 186 33 120 chr4 94842270 94843114 -60787006 + Lx5 LINE L1 6277 7047 -3 5 1308 635 263 199 5 chr4 94843136 94843794 -60786326 + L1ME2 LINE L1 5188 5981 -183 5 1308 1042 66 0 79 chr4 94843833 94843997 -60786123 - B2_Mm2 SINE B2 -43 152 2 5 1308 1268 41 0 0 chr4 94844040 94844186 -60785934 - B1_Mus1 SINE Alu -1 147 2 5 1308 378 162 28 9 chr4 94844186 94844292 -60785828 + MTC-int LTR MaLR 1087 1194 -64 5 1308 189 314 125 44 chr4 94846176 94846262 -60783858 - MIR SINE MIR -52 210 114 5 1308 2152 143 49 0 chr4 94846262 94846612 -60783508 - ORR1B2 LTR MaLR 0 367 1 5 1308 189 314 125 44 chr4 94846612 94846685 -60783435 - MIR SINE MIR -149 113 38 5 1308 1169 149 119 5 chr4 94846894 94847096 -60783024 - URR1A DNA MER1_type 0 226 2 5 1308 256 284 39 87 chr4 94847100 94847204 -60782916 - ORR1E LTR MaLR -260 99 1 5 1308 1488 180 167 21 chr4 94847523 94847720 -60782400 - ORR1C1 LTR MaLR 0 378 183 5 1308 798 62 0 0 chr4 94847720 94847833 -60782287 + (GA)n Simple_repeat Simple_repeat 2 114 0 5 1308 1488 180 167 21 chr4 94847833 94847965 -60782155 - ORR1C1 LTR MaLR -196 182 3 5 1308 1067 188 128 8 chr4 94850146 94850404 -60779716 - Lx9 LINE L1 -7 7637 7349 5 1308 861 251 161 29 chr4 94850528 94850572 -60779548 - MLT2C1 LTR ERVL -3 394 348 5 1308 683 54 11 0 chr4 94850572 94850664 -60779456 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 5 1308 861 251 161 29 chr4 94850664 94850967 -60779153 - MLT2C1 LTR ERVL -50 347 2 5 1308 237 389 19 0 chr4 94851391 94851499 -60778621 + L2b LINE L2 3266 3375 0 5 1308 342 289 18 35 chr4 94852032 94852199 -60777921 + MIRb SINE MIR 51 221 -47 5 1308 591 163 6 22 chr4 94853243 94853425 -60776695 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1308 293 316 25 34 chr4 94855460 94855578 -60774542 + ORSL DNA Tip100 159 275 0 5 1308 316 318 76 19 chr4 94855959 94856116 -60774004 - MER45A DNA Tip100 -7 171 6 5 1308 825 54 0 0 chr4 94856813 94856924 -60773196 + B1_Mus2 SINE Alu 37 147 0 5 1308 640 319 44 0 chr4 94858763 94859033 -60771087 + L1MB3 LINE L1 5793 6074 -109 5 1308 188 302 0 0 chr4 94859626 94859679 -60770441 - MIR SINE MIR -1 261 209 5 1308 480 18 0 0 chr4 94860672 94860729 -60769391 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1308 332 137 0 0 chr4 94860731 94860782 -60769338 - B1_Mus1 SINE Alu -97 51 1 5 1308 1088 92 6 0 chr4 94861299 94861462 -60768658 + (GA)n Simple_repeat Simple_repeat 1 164 0 5 1308 360 191 0 0 chr4 94861665 94861749 -60768371 + CT-rich Low_complexity Low_complexity 1 84 0 5 1308 1899 153 120 3 chr4 94861749 94862116 -60768004 - MTD LTR MaLR 0 419 10 5 1308 234 193 0 0 chr4 94862152 94862209 -60767911 + CT-rich Low_complexity Low_complexity 3 59 0 5 1308 26 0 0 0 chr4 94863227 94863253 -60766867 + AT_rich Low_complexity Low_complexity 1 26 0 5 1308 206 291 11 23 chr4 94863717 94863805 -60766315 - MIRm SINE MIR -148 128 42 5 1308 252 0 0 0 chr4 94864371 94864399 -60765721 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1308 248 316 65 7 chr4 94865212 94865365 -60764755 + L2 LINE L2 1360 1521 -1898 5 1308 2212 181 5 10 chr4 94865714 94866126 -60763994 + MTC LTR MaLR 2 411 -10 5 1308 317 333 142 40 chr4 94866616 94866919 -60763201 - L2 LINE L2 -443 2976 2643 5 1308 226 355 44 44 chr4 94867085 94867291 -60762829 - L2 LINE L2 -1553 1866 1661 5 1308 1420 261 61 32 chr4 94867332 94867739 -60762381 + MTD LTR MaLR 1 419 0 5 1308 568 0 0 27 chr4 94868629 94868703 -60761417 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 5 1308 468 0 0 0 chr4 94868779 94868831 -60761289 + (TAAAA)n Simple_repeat Simple_repeat 3 54 0 5 1308 303 221 393 34 chr4 94869849 94869994 -60760126 - RLTR26 LTR ERVK 0 642 446 5 1308 250 338 0 14 chr4 94870325 94870397 -60759723 - MLT1A1 LTR MaLR -279 129 59 5 1308 708 12 0 0 chr4 94870639 94870720 -60759400 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 5 1308 1046 108 0 7 chr4 94870727 94870876 -60759244 - B1_Mus1 SINE Alu 0 148 1 5 1308 570 266 121 78 chr4 94871424 94871770 -60758350 + L1MA5 LINE L1 5548 5908 -392 5 1308 423 0 0 0 chr4 94871790 94871837 -60758283 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1308 387 0 0 0 chr4 94871837 94871879 -60758241 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1308 1652 225 34 29 chr4 94872038 94872450 -60757670 - MTC LTR MaLR 0 421 8 5 1308 218 293 0 26 chr4 94873630 94873707 -60756413 + L2b LINE L2 3029 3103 -272 5 1308 198 292 0 0 chr4 94876135 94876183 -60753937 + L2b LINE L2 3120 3167 -220 5 1308 763 294 17 40 chr4 94876246 94876544 -60753576 - MER2 DNA MER2_type -52 293 3 5 1308 384 223 17 17 chr4 94877383 94877561 -60752559 + GA-rich Low_complexity Low_complexity 3 180 0 5 1308 1277 72 0 16 chr4 94877561 94877744 -60752376 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1308 962 145 124 0 chr4 94878112 94878305 -60751815 - URR1A DNA MER1_type 0 226 10 5 1308 1747 196 47 11 chr4 94878479 94878840 -60751280 + ORR1D1 LTR MaLR 1 374 0 5 1308 1811 149 35 77 chr4 94879019 94879447 -60750673 - RMER17C LTR ERVK 0 410 1 5 1308 198 328 30 0 chr4 94880373 94880440 -60749680 + MIRc SINE MIR 83 151 -117 5 1308 1012 184 242 13 chr4 94880985 94881283 -60748837 + ORR1D1 LTR MaLR 9 374 0 5 1308 813 212 16 0 chr4 94881283 94881476 -60748644 + ORR1D1-int LTR MaLR 15 210 -1160 5 1308 656 232 0 21 chr4 94881473 94881614 -60748506 + ORR1D1 LTR MaLR 136 273 -111 5 1308 295 343 10 0 chr4 94881716 94881818 -60748302 - MIR SINE MIR -123 139 37 5 1308 1059 161 179 71 chr4 94881881 94882161 -60747959 + RMER19C LTR ERVK 1 310 -301 5 1308 529 157 17 0 chr4 94882230 94882345 -60747775 + CT-rich Low_complexity Low_complexity 2 118 0 5 1308 1543 179 3 18 chr4 94882362 94882646 -60747474 + RMER19C LTR ERVK 326 605 -6 5 1308 16839 144 17 1 chr4 94882661 94885257 -60744863 + MurERV4_19-int LTR ERVK 19 2656 -3124 5 1308 3165 185 99 69 chr4 94885232 94885925 -60744195 + MurERV4_19-int LTR ERVK 4837 5544 -236 5 1308 204 40 0 0 chr4 94885925 94885950 -60744170 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 1308 3165 185 99 69 chr4 94885950 94886172 -60743948 + MurERV4_19-int LTR ERVK 5545 5780 0 5 1308 2615 148 114 65 chr4 94886172 94886743 -60743377 + RMER19C LTR ERVK 1 599 -12 5 1308 786 253 134 29 chr4 94886773 94886791 -60743329 + MTD LTR MaLR 114 125 -294 5 1308 1434 233 56 20 chr4 94886791 94887146 -60742974 + ORR1D2 LTR MaLR 3 370 0 5 1308 786 253 134 29 chr4 94887146 94887404 -60742716 + MTD LTR MaLR 126 419 0 5 1308 273 325 61 0 chr4 94888620 94888734 -60741386 - MIRm SINE MIR -132 144 24 5 1308 198 0 0 0 chr4 94888861 94888883 -60741237 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 5 1308 214 197 141 26 chr4 94889941 94890019 -60740101 + L2c LINE L2 3038 3124 -263 5 1308 511 282 27 0 chr4 94890154 94890303 -60739817 - B4 SINE B4 -4 288 136 5 1308 837 0 0 0 chr4 94890303 94890396 -60739724 + (TTC)n Simple_repeat Simple_repeat 1 93 0 5 1308 35329 70 2 3 chr4 94890397 94893482 -60736638 - L1Md_F2 LINE L1 -14 6568 3486 5 1308 252 0 0 0 chr4 94893482 94893510 -60736610 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 163 35329 84 19 2 chr4 94893510 94896543 -60733577 - L1Md_F2 LINE L1 -2398 3485 398 5 1309 257 274 0 16 chr4 94896585 94896648 -60733472 - B4 SINE B4 -212 80 19 5 1309 21 0 0 0 chr4 94896670 94896691 -60733429 + AT_rich Low_complexity Low_complexity 1 21 0 5 1309 210 174 0 0 chr4 94898392 94898438 -60731682 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1309 363 60 0 0 chr4 94898441 94898491 -60731629 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 5 1309 694 263 65 0 chr4 94898492 94898678 -60731442 - B3 SINE B2 -17 199 2 5 1309 197 33 33 0 chr4 94898938 94898968 -60731152 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1309 269 68 0 22 chr4 94899008 94899053 -60731067 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 1309 1042 74 20 0 chr4 94899054 94899203 -60730917 - B2_Mm2 SINE B2 -43 152 1 5 1309 299 325 80 31 chr4 94900029 94900353 -60729767 + L1ME4a LINE L1 5559 5898 -226 5 1309 282 331 103 21 chr4 94900389 94900583 -60729537 - MIR SINE MIR -1 261 52 5 1309 758 230 55 73 chr4 94901295 94901515 -60728605 + B3 SINE B2 1 216 0 5 1309 2123 153 102 3 chr4 94902338 94902719 -60727401 - MTD LTR MaLR 0 419 1 5 1309 260 291 147 16 chr4 94904055 94904184 -60725936 + MLT1B LTR MaLR 4 149 -241 5 1309 311 65 22 0 chr4 94904208 94904254 -60725866 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1309 369 235 24 87 chr4 94904538 94904664 -60725456 - L2c LINE L2 -2 3385 3268 5 1309 2496 179 54 0 chr4 94905516 94905981 -60724139 - Lx9 LINE L1 0 7644 7155 5 1309 581 153 61 0 chr4 94905981 94906079 -60724041 - Lx9 LINE L1 -835 6809 6706 5 1309 15650 213 77 45 chr4 94906097 94909415 -60720705 - Lx9 LINE L1 -1010 6463 3012 5 1309 333 0 0 0 chr4 94909415 94909452 -60720668 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5 1309 15650 199 79 47 chr4 94909452 94910439 -60719681 - Lx9 LINE L1 -2836 3011 2016 5 1309 2334 130 81 2 chr4 94910439 94910833 -60719287 - Lx3C LINE L1 0 6976 6552 5 1309 15650 207 115 43 chr4 94910833 94912289 -60717831 - Lx9 LINE L1 -3832 2015 443 5 1309 294 299 49 42 chr4 94914717 94914860 -60715260 - HERV16-int LTR ERVL -4499 497 354 5 1309 301 328 60 43 chr4 94915959 94916144 -60713976 - MLT1J LTR MaLR -324 188 1 5 1309 245 235 57 29 chr4 94916472 94916577 -60713543 + RMER1C Other Other 1223 1330 -12 5 1309 260 226 71 0 chr4 94918611 94918695 -60711425 - MIRc SINE MIR -118 150 61 5 1309 1100 150 24 10 chr4 94919201 94919409 -60710711 - Lx LINE L1 -5 6649 6439 5 1309 377 288 102 83 chr4 94919834 94920050 -60710070 + B4A SINE B4 1 220 -72 5 1309 1661 146 50 16 chr4 94920085 94920405 -60709715 - RLTR15 LTR ERVK 0 359 29 5 1309 228 122 0 0 chr4 94920450 94920491 -60709629 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1309 364 299 55 0 chr4 94920589 94920716 -60709404 - MER58A DNA MER1_type -46 178 45 5 1309 286 284 39 0 chr4 94920716 94920818 -60709302 + L1MC LINE L1 3601 3706 -2440 5 1309 2997 61 200 9 chr4 94920945 94921375 -60708745 + RLTR1B LTR ERV1 1 512 0 5 1309 68015 20 1 0 chr4 94921375 94928927 -60701193 + MMERGLN-int LTR ERV1 1 7556 0 5 1309 2994 63 200 9 chr4 94928927 94929357 -60700763 + RLTR1B LTR ERV1 1 512 0 5 1309 31943 105 19 7 chr4 94930217 94936334 -60693786 - L1_Mus1 LINE L1 0 6654 377 5 1309 193 316 61 9 chr4 94937079 94937194 -60692926 + MIRb SINE MIR 82 202 -66 5 1309 1355 202 104 68 chr4 94937375 94937741 -60692379 - MTEa LTR MaLR 0 379 1 6 1309 185 256 0 12 chr4 94937759 94937842 -60692278 + GA-rich Low_complexity Low_complexity 2 83 0 6 1309 433 218 140 53 chr4 94937863 94938013 -60692107 + L1M3 LINE L1 5476 5638 -545 6 1309 235 294 79 122 chr4 94938185 94938368 -60691752 - MIR SINE MIR -71 197 25 6 1309 910 240 61 30 chr4 94939117 94939455 -60690665 + MTD LTR MaLR 2 379 -40 6 1309 1764 127 12 63 chr4 94939455 94939774 -60690346 + ORR1A3 LTR MaLR 3 305 -21 6 1309 526 268 216 29 chr4 94939820 94940024 -60690096 + B4A SINE B4 37 278 -14 6 1309 624 197 39 8 chr4 94940077 94940205 -60689915 + MT2A LTR ERVL 1 132 -401 6 1309 4089 140 48 30 chr4 94940247 94940989 -60689131 - RMER6A LTR ERVK 0 756 1 6 1309 849 211 86 84 chr4 94940990 94941379 -60688741 + MT2A LTR ERVL 101 533 0 6 1309 629 204 75 15 chr4 94941478 94941612 -60688508 + B1_Mur2 SINE Alu 5 146 -3 6 1309 272 216 108 0 chr4 94942297 94942371 -60687749 + MIRb SINE MIR 121 202 -66 6 1309 311 331 81 38 chr4 94942905 94943090 -60687030 + MLT1D LTR MaLR 22 214 -291 6 1309 203 297 87 11 chr4 94943453 94943545 -60686575 + MIRb SINE MIR 61 159 -109 6 1309 350 294 107 68 chr4 94943979 94944260 -60685860 + B4A SINE B4 1 292 0 6 1309 192 311 70 38 chr4 94946069 94946226 -60683894 + L2c LINE L2 3001 3162 -225 6 1309 2354 177 34 2 chr4 94947437 94947844 -60682276 - MTC LTR MaLR -1 420 1 6 1309 546 16 0 0 chr4 94948129 94948192 -60681928 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1309 188 238 0 16 chr4 94948407 94948471 -60681649 + CT-rich Low_complexity Low_complexity 1 63 0 6 1309 300 83 0 0 chr4 94949526 94949574 -60680546 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1309 604 304 129 19 chr4 94949778 94950157 -60679963 + MLT1D LTR MaLR 79 499 -6 6 1309 235 279 185 17 chr4 94950453 94950672 -60679448 - L2b LINE L2 -260 3115 2866 6 1309 966 264 35 11 chr4 94951480 94951763 -60678357 + Lx7 LINE L1 7113 7402 -294 6 1309 354 115 0 0 chr4 94951783 94951844 -60678276 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1309 236 213 71 44 chr4 94951844 94951957 -60678163 + Lx7 LINE L1 7578 7693 -3 6 1309 198 171 0 0 chr4 94952642 94952683 -60677437 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1309 24 32 0 0 chr4 94952919 94952950 -60677170 + AT_rich Low_complexity Low_complexity 1 31 0 6 1309 804 262 55 0 chr4 94953017 94953219 -60676901 - B3 SINE B2 -3 213 1 6 1309 193 333 14 0 chr4 94953698 94953767 -60676353 - L4 LINE RTE -1243 786 717 6 1309 246 220 17 0 chr4 94954086 94954145 -60675975 - PB1 SINE Alu -56 71 12 6 1309 444 214 0 0 chr4 94956290 94956402 -60673718 + (TGGA)n Simple_repeat Simple_repeat 3 114 0 6 1309 198 277 89 32 chr4 94957445 94957568 -60672552 + MIRc SINE MIR 18 147 -121 6 1309 287 282 120 15 chr4 94958348 94958481 -60671639 - MER5A DNA MER1_type 0 189 43 6 1309 23 0 0 0 chr4 94958686 94958709 -60671411 + AT_rich Low_complexity Low_complexity 1 23 0 6 1309 584 267 141 54 chr4 94959100 94959433 -60670687 + MLT1A0 LTR MaLR 3 364 -1 6 1309 585 207 26 0 chr4 94960794 94960910 -60669210 + PB1D9 SINE Alu 2 120 0 6 1309 432 313 44 6 chr4 94961146 94961329 -60668791 - MLT1A0 LTR MaLR -22 343 154 6 1309 940 312 70 6 chr4 94961374 94961719 -60668401 + MLT1A1 LTR MaLR 35 401 -7 6 1309 293 282 92 46 chr4 94961722 94961852 -60668268 - MLT1A0 LTR MaLR -227 138 3 6 1309 918 109 0 74 chr4 94962014 94962162 -60667958 + B1_Mus2 SINE Alu 1 137 -10 6 1309 320 43 22 0 chr4 94962162 94962208 -60667912 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1309 203 278 37 0 chr4 94962290 94962344 -60667776 + MIR3 SINE MIR 128 183 -25 6 1309 323 195 0 25 chr4 94963839 94963918 -60666202 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 6 1309 296 292 56 11 chr4 94964590 94964680 -60665440 - ORR1C2 LTR MaLR -117 267 174 6 1309 248 154 24 49 chr4 94964680 94964762 -60665358 + GA-rich Low_complexity Low_complexity 3 82 0 6 1309 297 109 0 0 chr4 94964834 94964880 -60665240 + (TCC)n Simple_repeat Simple_repeat 3 48 0 6 1309 1018 200 29 10 chr4 94965419 94965626 -60664494 - ORR1C2 LTR MaLR 0 384 174 6 1309 636 191 12 24 chr4 94965626 94965874 -60664246 + GA-rich Low_complexity Low_complexity 1 244 0 6 1309 922 287 14 18 chr4 94965915 94966135 -60663985 - B4A SINE B4 -18 274 56 6 1309 354 23 0 0 chr4 94966137 94966180 -60663940 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1309 261 83 0 0 chr4 94966180 94966215 -60663905 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1309 660 231 92 65 chr4 94966506 94966723 -60663397 - B4 SINE B4 -62 230 8 6 1309 245 298 53 11 chr4 94967927 94968022 -60662098 - B1F SINE Alu -8 141 43 6 1309 270 283 22 0 chr4 94969207 94969299 -60660821 + L2 LINE L2 2834 2927 -492 6 1309 467 314 62 5 chr4 94969697 94969889 -60660231 - Tigger7 DNA MER2_type 0 2491 2289 6 1309 231 179 185 39 chr4 94970718 94970812 -60659308 - MIRc SINE MIR -102 160 55 6 1309 2130 192 9 23 chr4 94971895 94972322 -60657798 + MTC LTR MaLR 1 421 0 6 1309 8109 62 3 3 chr4 94972595 94973872 -60656248 + L1_Mus1 LINE L1 5291 6567 0 6 1309 213 108 0 0 chr4 94973903 94973940 -60656180 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1309 285 98 0 0 chr4 94974198 94974239 -60655881 + (TCC)n Simple_repeat Simple_repeat 1 41 0 6 1309 256 304 0 0 chr4 94974246 94974315 -60655805 + CT-rich Low_complexity Low_complexity 6 74 0 6 1309 1069 181 5 19 chr4 94974451 94974659 -60655461 - ORR1D1 LTR MaLR -4 370 166 6 1309 201 138 0 0 chr4 94974672 94974701 -60655419 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1309 331 239 68 0 chr4 94974872 94974971 -60655149 + MIR SINE MIR 61 158 -104 6 1309 723 248 195 61 chr4 94975759 94976103 -60654017 - MTD LTR MaLR -21 398 9 6 1309 483 233 86 8 chr4 94976359 94976476 -60653644 + RSINE1 SINE B4 3 128 -37 6 1309 219 69 0 0 chr4 94976482 94976511 -60653609 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1309 422 156 29 29 chr4 94976512 94976651 -60653469 + (CAGAGA)n Simple_repeat Simple_repeat 2 140 0 6 1309 194 378 31 0 chr4 94976837 94976935 -60653185 + MIRc SINE MIR 51 151 -117 6 1309 315 0 0 0 chr4 94977751 94977786 -60652334 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1309 279 0 0 0 chr4 94977786 94977816 -60652304 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1309 252 274 0 61 chr4 94977821 94977887 -60652233 - B4 SINE B4 0 292 231 6 1309 779 106 16 0 chr4 94977890 94978013 -60652107 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 6 1309 662 265 90 5 chr4 94978014 94978035 -60652085 - B4A SINE B4 -46 246 226 6 1309 663 48 0 0 chr4 94978035 94978118 -60652002 + (TTTCC)n Simple_repeat Simple_repeat 3 85 0 6 1309 803 226 89 0 chr4 94978118 94978308 -60651812 - B4 SINE B4 -69 223 17 6 1309 245 315 40 47 chr4 94978425 94978575 -60651545 - L2a LINE L2 -1 3425 3277 6 1309 513 0 0 0 chr4 94978928 94978985 -60651135 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1309 6338 234 52 38 chr4 94979137 94980236 -60649884 + Lx7 LINE L1 5804 6909 -787 6 1309 5552 134 37 37 chr4 94980236 94981229 -60648891 - Lx3C LINE L1 -2 6974 5982 6 1309 6338 234 52 38 chr4 94981229 94981490 -60648630 + Lx7 LINE L1 6910 7168 -528 6 1309 2119 157 81 18 chr4 94981490 94981886 -60648234 - MTC LTR MaLR 0 421 1 6 1309 6338 234 52 38 chr4 94981886 94982117 -60648003 + Lx7 LINE L1 7169 7416 -280 6 1309 180 0 0 0 chr4 94982119 94982139 -60647981 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1309 1025 134 252 6 chr4 94982171 94982390 -60647730 + Lx2 LINE L1 6744 6993 -4 6 1309 916 253 20 5 chr4 94982676 94982871 -60647249 + B3 SINE B2 1 198 -18 6 1309 1432 207 128 22 chr4 94983469 94983790 -60646330 + MTD LTR MaLR 1 355 -64 6 1309 250 292 21 10 chr4 94983975 94984072 -60646048 - L2a LINE L2 -455 2964 2867 6 1309 197 257 176 0 chr4 94985817 94985891 -60644229 - MIR SINE MIR -130 132 46 6 1309 214 215 106 15 chr4 94986182 94986248 -60643872 + MIRc SINE MIR 4 75 -193 6 1309 238 250 0 0 chr4 94986369 94986417 -60643703 + CT-rich Low_complexity Low_complexity 5 52 0 6 1309 571 246 8 8 chr4 94986624 94986751 -60643369 - MTD LTR MaLR 0 419 293 6 1309 1418 221 83 12 chr4 94986761 94987168 -60642952 - RMER10A LTR ERVL -6 436 1 6 1309 1241 231 59 0 chr4 94987169 94987459 -60642661 - MTD LTR MaLR -112 307 1 6 1309 4227 140 17 53 chr4 94987687 94987939 -60642181 - RMER6A LTR ERVK 0 756 506 6 1309 627 14 0 0 chr4 94987939 94988011 -60642109 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 1309 4227 140 17 53 chr4 94988011 94988543 -60641577 - RMER6A LTR ERVK -251 505 1 6 1309 1010 209 24 5 chr4 94988766 94988978 -60641142 - B3 SINE B2 0 216 1 6 1309 303 342 83 3 chr4 94989208 94989496 -60640624 + L1M2c LINE L1 2093 2480 -4009 6 1309 361 258 23 27 chr4 94989839 94990015 -60640105 + L1M2c LINE L1 2889 3065 -3720 6 1309 287 216 0 0 chr4 94990089 94990140 -60639980 - B3A SINE B2 -118 80 30 6 1309 253 301 82 21 chr4 94990159 94990368 -60639752 - L1_Rod LINE L1 -4081 1766 1535 6 1309 271 293 85 51 chr4 94990410 94990586 -60639534 + L1M2c LINE L1 3131 3312 -3473 6 1309 1011 316 100 30 chr4 94990605 94991376 -60638744 + L1_Mur3 LINE L1 3171 3995 -1885 6 1309 674 299 44 11 chr4 94991540 94991814 -60638306 + B4A SINE B4 2 284 -8 6 1309 317 217 0 0 chr4 94992108 94992168 -60637952 - Lx8 LINE L1 -360 7113 7054 6 1309 258 189 0 3 chr4 94992181 94992255 -60637865 - L1M2 LINE L1 -906 5391 5319 6 1309 742 269 44 24 chr4 94992306 94992599 -60637521 - L1M2 LINE L1 -955 5188 4890 6 1309 180 0 0 0 chr4 94993405 94993425 -60636695 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1309 25 95 0 0 chr4 94993916 94993990 -60636130 + AT_rich Low_complexity Low_complexity 1 74 0 6 1309 285 301 37 160 chr4 94994044 94994313 -60635807 + ORR1E LTR MaLR 99 334 -25 6 1309 312 27 0 0 chr4 94994894 94994931 -60635189 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1309 1525 174 62 20 chr4 94994994 94995335 -60634785 - ORR1B2 LTR MaLR -8 359 5 6 1309 609 83 0 0 chr4 94995357 94995441 -60634679 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 1309 228 189 17 102 chr4 94995831 94995890 -60634230 - MER34 LTR ERV1 -104 438 385 7 1309 428 184 0 10 chr4 94997003 94997107 -60633013 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1309 587 273 7 48 chr4 94997110 94997256 -60632864 - RSINE1 SINE B4 0 165 26 7 1309 438 259 83 7 chr4 94997282 94997426 -60632694 + B3A SINE B2 2 156 -42 7 1309 207 343 70 11 chr4 94998269 94998374 -60631746 - MIR SINE MIR -141 127 13 7 1309 188 339 62 35 chr4 94999110 94999223 -60630897 - L2 LINE L2 -574 2845 2730 7 1309 412 317 138 9 chr4 94999298 94999530 -60630590 + LTR50 LTR ERVL 55 316 -479 7 1309 334 290 129 6 chr4 94999573 94999736 -60630384 + LTR50 LTR ERVL 387 569 -226 7 1309 2006 46 4 0 chr4 94999738 95000000 -60630120 + MTA_Mm LTR MaLR 1 263 -133 7 1309 1055 38 0 0 chr4 95000000 95000133 -60629987 + MTA_Mm LTR MaLR 264 396 0 1 1309 250 254 48 0 chr4 95000580 95000643 -60629477 + ID SINE ID 6 71 -153 2 1309 227 284 44 15 chr4 95000582 95000650 -60629470 + tRNA-Ala-GCA tRNA tRNA 2 71 -4 3 1309 274 233 55 0 chr4 95001581 95001654 -60628466 + L1MC1 LINE L1 5989 6065 -268 4 1309 244 242 76 0 chr4 95002138 95002204 -60627916 - MER53 DNA hAT -5 188 118 5 1309 981 244 4 52 chr4 95002205 95002438 -60627682 - Lx9 LINE L1 -753 6891 6670 6 1309 900 195 0 67 chr4 95002440 95002467 -60627653 + ORR1C2 LTR MaLR 1 22 -362 7 1309 2107 132 22 0 chr4 95002467 95002785 -60627335 - ORR1A2 LTR MaLR 0 327 3 8 1309 900 195 0 67 chr4 95002785 95002966 -60627154 + ORR1C2 LTR MaLR 23 195 -189 7 1309 307 103 29 29 chr4 95002968 95003038 -60627082 + (TCTG)n Simple_repeat Simple_repeat 3 72 0 9 1309 1037 171 19 51 chr4 95003049 95003060 -60627060 + ORR1C2 LTR MaLR 174 184 -200 7 1309 333 0 0 0 chr4 95003060 95003097 -60627023 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1309 1037 171 19 51 chr4 95003097 95003301 -60626819 + ORR1C2 LTR MaLR 185 382 -2 7 1309 3549 228 107 98 chr4 95003303 95004658 -60625462 + ORR1C2-int LTR MaLR 1 1369 -140 7 1309 660 147 0 34 chr4 95004658 95004772 -60625348 + Lx LINE L1 6512 6623 -31 1 1309 1115 90 0 0 chr4 95004772 95004916 -60625204 + B1_Mus1 SINE Alu 5 148 0 1 1309 660 147 0 34 chr4 95004916 95004949 -60625171 + Lx LINE L1 6624 6654 0 1 1309 3549 228 107 98 chr4 95004949 95005088 -60625032 + ORR1C2-int LTR MaLR 1370 1509 0 7 1309 474 171 0 0 chr4 95005088 95005170 -60624950 + ORR1C2 LTR MaLR 1 82 -302 7 1309 2086 160 60 5 chr4 95005192 95005575 -60624545 + MTC LTR MaLR 13 416 -5 1 1309 668 193 28 0 chr4 95005608 95005753 -60624367 + Lx9 LINE L1 7495 7643 -1 1 1309 258 276 26 0 chr4 95005988 95006064 -60624056 - MER5A1 DNA MER1_type -88 78 1 1 1309 264 159 0 0 chr4 95006444 95006488 -60623632 - MTE2b LTR MaLR -16 363 320 1 1309 644 36 0 12 chr4 95006818 95006902 -60623218 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 1 1309 200 176 0 0 chr4 95006906 95006940 -60623180 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1309 22 0 0 0 chr4 95007671 95007693 -60622427 + AT_rich Low_complexity Low_complexity 1 22 0 1 1309 1031 246 164 28 chr4 95008676 95009005 -60621115 + MTEa LTR MaLR 1 374 -5 2 1309 432 0 0 0 chr4 95009267 95009315 -60620805 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1309 219 216 0 0 chr4 95009334 95009371 -60620749 + ID SINE ID 42 78 -146 2 1309 35 24 0 0 chr4 95009845 95009887 -60620233 + AT_rich Low_complexity Low_complexity 1 42 0 2 1309 1553 210 52 33 chr4 95010132 95010461 -60619659 + ORR1D1 LTR MaLR 2 341 -33 2 1309 2424 161 26 0 chr4 95010461 95010845 -60619275 + ORR1B1 LTR MaLR 1 394 0 2 1309 1553 210 52 33 chr4 95010845 95010879 -60619241 + ORR1D1 LTR MaLR 342 372 -2 2 1309 801 217 32 43 chr4 95011277 95011465 -60618655 - B3 SINE B2 -30 186 1 2 1309 225 247 85 12 chr4 95012762 95012844 -60617276 + MIR SINE MIR 105 192 -70 2 1309 224 266 142 35 chr4 95014110 95014223 -60615897 - MIRb SINE MIR -97 171 47 2 1309 307 282 0 0 chr4 95014255 95014326 -60615794 - ID4_ SINE ID -11 72 2 2 1309 230 311 140 32 chr4 95014335 95014428 -60615692 - PB1 SINE Alu -2 125 23 3 1309 294 29 0 0 chr4 95014614 95014649 -60615471 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1309 231 257 52 52 chr4 95014730 95014845 -60615275 + MIRb SINE MIR 54 168 -100 3 1309 197 281 83 46 chr4 95015809 95015917 -60614203 - MIRb SINE MIR -133 135 24 3 1309 789 279 5 10 chr4 95016094 95016286 -60613834 + ID_B1 SINE B4 3 193 -31 3 1309 3248 104 24 33 chr4 95016431 95016940 -60613180 + Lx3B LINE L1 6466 6969 -4 3 1309 456 303 80 11 chr4 95017200 95017387 -60612733 + MER3 DNA MER1_type 10 209 0 3 1309 1361 224 89 18 chr4 95017925 95018316 -60611804 + MTD LTR MaLR 1 419 0 3 1309 589 268 0 79 chr4 95018790 95019005 -60611115 - B3A SINE B2 0 198 1 3 1309 228 278 118 34 chr4 95019258 95019377 -60610743 - LTR48 LTR ERV1 -657 130 2 3 1309 634 210 32 16 chr4 95019759 95019885 -60610235 + RSINE1 SINE B4 11 138 -27 4 1309 228 67 0 0 chr4 95019885 95019915 -60610205 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1309 208 294 22 56 chr4 95021409 95021499 -60608621 + MIR SINE MIR 70 156 -106 4 1309 468 0 0 0 chr4 95021660 95021712 -60608408 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1309 298 226 125 19 chr4 95022159 95022263 -60607857 - B4A SINE B4 -173 119 5 4 1309 287 164 16 0 chr4 95023159 95023220 -60606900 + (ATG)n Simple_repeat Simple_repeat 2 63 0 4 1309 2126 147 103 39 chr4 95023617 95024055 -60606065 + RMER4A LTR ERVK 1 466 0 4 1309 22 0 0 0 chr4 95024097 95024119 -60606001 + AT_rich Low_complexity Low_complexity 1 22 0 4 1309 315 0 0 0 chr4 95024151 95024186 -60605934 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1309 405 0 0 0 chr4 95024703 95024748 -60605372 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1309 204 67 0 0 chr4 95025000 95025030 -60605090 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1309 3420 133 84 82 chr4 95025030 95025741 -60604379 - RMER1B Other Other -1 1065 353 5 1309 245 307 22 43 chr4 95026659 95026751 -60603369 + MIR SINE MIR 163 252 -10 5 1309 316 316 51 8 chr4 95026801 95026919 -60603201 - MIRb SINE MIR -94 174 52 5 1310 267 237 115 67 chr4 95027577 95027681 -60602439 + MIRc SINE MIR 61 169 -99 5 1310 302 330 109 78 chr4 95028696 95029450 -60600670 - L1MC4 LINE L1 -146 7896 7120 5 1310 645 276 46 0 chr4 95029883 95030057 -60600063 - B3A SINE B2 -8 190 9 5 1310 827 130 12 12 chr4 95030058 95030229 -60599891 + CT-rich Low_complexity Low_complexity 2 172 0 5 1310 298 325 0 0 chr4 95030490 95030570 -60599550 - MLT1J LTR MaLR -398 114 35 5 1310 1808 138 124 84 chr4 95030736 95031115 -60599005 - ORR1B1 LTR MaLR 0 394 1 5 1310 250 309 22 0 chr4 95031611 95031709 -60598411 + L2a LINE L2 3249 3399 -27 6 1310 185 94 0 30 chr4 95031962 95031995 -60598125 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1310 646 261 0 8 chr4 95032001 95032132 -60597988 - RSINE1 SINE B4 -33 132 3 6 1310 824 161 30 76 chr4 95032301 95032563 -60597557 + MurERV4_19-int LTR ERVK 5529 5778 -2 6 1310 368 307 64 19 chr4 95032616 95032928 -60597192 - L1M5 LINE L1 -3096 3050 2725 6 1310 180 111 0 0 chr4 95033202 95033229 -60596891 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1310 1117 271 157 23 chr4 95033602 95034043 -60596077 + MLT1F2 LTR MaLR 19 518 -42 6 1310 280 295 53 0 chr4 95034061 95034156 -60595964 + L1MC4 LINE L1 5625 5724 -2158 6 1310 1444 91 0 0 chr4 95034164 95034351 -60595769 - Lx3A LINE L1 -223 6758 6572 6 1310 1414 153 4 4 chr4 95034466 95034696 -60595424 + Lx3A LINE L1 6736 6965 -16 6 1310 270 0 0 0 chr4 95034700 95034730 -60595390 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 7 1310 530 155 10 10 chr4 95034813 95034911 -60595209 + L1VL1 LINE L1 192 289 -6133 7 1310 30520 75 46 10 chr4 95034913 95039413 -60590707 + L1Md_F2 LINE L1 936 5584 -299 7 1310 7856 69 0 2 chr4 95039415 95040401 -60589719 + L1Md_F2 LINE L1 5587 6570 -12 7 1310 2580 150 79 8 chr4 95040481 95040973 -60589147 - RLTR11A2 LTR ERVK 0 527 1 7 1310 307 312 108 19 chr4 95040973 95041130 -60588990 - MLT1H2 LTR MaLR -123 366 196 7 1310 248 287 36 103 chr4 95041312 95041506 -60588614 + L1MC4 LINE L1 5876 6056 -1826 6 1310 212 59 0 29 chr4 95041529 95041564 -60588556 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 7 1310 442 276 52 0 chr4 95041619 95041753 -60588367 + Lx8 LINE L1 6986 7126 -347 7 1310 1267 34 0 0 chr4 95041783 95041930 -60588190 + B1_Mus2 SINE Alu 1 147 0 7 1310 210 133 0 43 chr4 95041932 95041979 -60588141 + A-rich Low_complexity Low_complexity 4 48 0 7 1310 255 269 0 29 chr4 95041992 95042061 -60588059 + Lx8 LINE L1 7156 7222 -251 7 1310 201 94 0 0 chr4 95042070 95042102 -60588018 + (C)n Simple_repeat Simple_repeat 1 32 0 7 1310 215 61 0 29 chr4 95042228 95042262 -60587858 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 1310 28 0 0 0 chr4 95042313 95042341 -60587779 + AT_rich Low_complexity Low_complexity 1 28 0 8 1310 311 291 58 45 chr4 95042472 95042627 -60587493 + L1MC4 LINE L1 7741 7897 -145 6 1310 343 290 10 0 chr4 95042877 95042977 -60587143 + L1MC4 LINE L1 7940 8040 -2 6 1310 263 370 16 8 chr4 95043754 95043882 -60586238 + MER5A1 DNA MER1_type 1 129 -37 8 1310 432 293 98 12 chr4 95044672 95044905 -60585215 - MIR SINE MIR 0 262 22 8 1310 293 253 127 64 chr4 95044914 95045087 -60585033 + MER5A DNA MER1_type 6 189 0 8 1310 190 374 33 0 chr4 95046223 95046314 -60583806 - MIRb SINE MIR -56 212 119 8 1310 1603 170 62 73 chr4 95046382 95046738 -60583382 + ORR1B2 LTR MaLR 1 352 -15 8 1310 193 277 0 0 chr4 95047801 95047848 -60582272 + MIRb SINE MIR 120 166 -102 8 1310 3874 80 0 4 chr4 95047848 95048349 -60581771 + L1_Mus2 LINE L1 6067 6565 -1 8 1310 390 265 168 5 chr4 95048858 95048991 -60581129 + B3A SINE B2 3 156 -42 8 1310 380 20 0 20 chr4 95048992 95049042 -60581078 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1310 672 13 0 0 chr4 95049042 95049118 -60581002 + (GA)n Simple_repeat Simple_repeat 2 78 0 9 1310 484 205 170 0 chr4 95049153 95049265 -60580855 + B1_Mur2 SINE Alu 9 139 -10 9 1310 605 99 0 0 chr4 95049337 95049428 -60580692 - B2_Mm2 SINE B2 -104 91 1 9 1310 185 138 0 0 chr4 95049466 95049495 -60580625 - MIRc SINE MIR -122 146 118 9 1310 1054 164 44 0 chr4 95050712 95050895 -60579225 - B2_Mm2 SINE B2 -4 191 1 9 1310 259 305 22 79 chr4 95052008 95052147 -60577973 - RLTR42-int LTR ERVK -1762 4375 4245 9 1310 321 179 104 0 chr4 95052348 95052415 -60577705 - RLTR42-int LTR ERVK -2023 4114 4041 9 1310 658 209 50 39 chr4 95052621 95052800 -60577320 - RLTR42-int LTR ERVK -2431 3706 3526 9 1310 318 282 35 145 chr4 95053078 95053368 -60576752 - RLTR42-int LTR ERVK -2934 3203 2946 9 1310 2950 174 74 11 chr4 95053380 95053938 -60576182 + RMER1B Other Other 8 1048 -18 9 1310 1310 244 58 72 chr4 95054059 95054863 -60575257 - RLTR42-int LTR ERVK -3242 2895 1870 9 1310 239 306 62 18 chr4 95057107 95057220 -60572900 + L1M5 LINE L1 5501 5618 -506 9 1310 235 255 196 9 chr4 95057375 95057482 -60572638 + MIRm SINE MIR 134 260 -16 9 1310 399 289 3 3 chr4 95058467 95058767 -60571353 + (TGG)n Simple_repeat Simple_repeat 1 300 0 1 1310 423 0 0 0 chr4 95058916 95058963 -60571157 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1310 2283 264 45 19 chr4 95059187 95059813 -60570307 - Lx8 LINE L1 -355 7118 6477 1 1310 294 305 163 22 chr4 95059818 95060179 -60569941 - L1MD LINE L1 -3475 2671 2265 1 1310 266 191 0 0 chr4 95060788 95060835 -60569285 + ORR1C2 LTR MaLR 1 47 -337 1 1310 200 59 29 0 chr4 95061174 95061208 -60568912 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1310 437 402 74 34 chr4 95061625 95062042 -60568078 - LTR33 LTR ERVL -26 489 56 1 1310 297 0 0 0 chr4 95062089 95062122 -60567998 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1310 546 360 131 6 chr4 95062123 95062444 -60567676 + MLT1J LTR MaLR 152 512 0 1 1310 250 338 0 37 chr4 95062498 95062633 -60567487 - MLT1N2 LTR MaLR -14 548 419 1 1310 22 35 0 0 chr4 95063177 95063206 -60566914 + AT_rich Low_complexity Low_complexity 1 29 0 1 1310 206 136 0 22 chr4 95063986 95064031 -60566089 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1 1310 236 314 148 44 chr4 95064238 95064421 -60565699 - MLT1N2 LTR MaLR -214 298 97 1 1310 794 261 65 11 chr4 95064440 95064626 -60565494 - B3A SINE B2 -1 197 2 1 1310 266 169 11 115 chr4 95064930 95065017 -60565103 + MIRc SINE MIR 72 149 -119 1 1310 1258 164 82 5 chr4 95065710 95065918 -60564202 - URR1A DNA MER1_type -2 224 1 1 1310 229 213 0 0 chr4 95065974 95066021 -60564099 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 1 1310 645 69 0 0 chr4 95066053 95066140 -60563980 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1310 540 316 71 82 chr4 95066144 95066496 -60563624 + MLT1A0 LTR MaLR 1 348 -17 1 1310 227 208 0 19 chr4 95066514 95066568 -60563552 + GA-rich Low_complexity Low_complexity 3 55 0 1 1310 449 34 17 0 chr4 95067004 95067063 -60563057 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 1 1310 209 233 0 0 chr4 95067305 95067348 -60562772 + T-rich Low_complexity Low_complexity 1 43 0 1 1310 223 349 78 28 chr4 95067520 95067738 -60562382 - L2c LINE L2 -5 3382 3154 1 1310 712 332 92 19 chr4 95067742 95068067 -60562053 + MLT1A0 LTR MaLR 17 365 0 1 1310 892 179 8 0 chr4 95068136 95068270 -60561850 + B1_Mur4 SINE Alu 2 136 -14 1 1310 423 0 0 0 chr4 95068274 95068321 -60561799 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1310 288 53 0 0 chr4 95068328 95068366 -60561754 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1310 422 301 57 35 chr4 95068369 95068510 -60561610 - RSINE1 SINE B4 -17 148 5 1 1310 225 0 0 0 chr4 95069666 95069691 -60560429 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1310 1293 205 26 3 chr4 95070192 95070495 -60559625 + L1_Mur3 LINE L1 871 1180 -6532 1 1310 3063 6 0 0 chr4 95071292 95071614 -60558506 - RLTRETN_Mm LTR ERVK 0 322 1 1 1310 199 278 108 32 chr4 95071780 95071873 -60558247 - L2a LINE L2 -33 3393 3294 1 1310 2470 221 76 14 chr4 95072128 95072696 -60557424 + Lx7 LINE L1 6805 7407 -289 1 1310 4010 201 45 38 chr4 95073789 95074737 -60555383 + Lx9 LINE L1 542 1485 -4362 1 1310 228 35 0 0 chr4 95074737 95074766 -60555354 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1310 4010 178 42 41 chr4 95074766 95075452 -60554668 + Lx9 LINE L1 1486 2182 -3665 1 1310 558 146 0 40 chr4 95075462 95075562 -60554558 + L1_Rod LINE L1 1451 1546 -4301 1 1310 3424 203 18 9 chr4 95075559 95075842 -60554278 + Lx9 LINE L1 2185 2471 -3376 1 1310 216 0 0 0 chr4 95075842 95075866 -60554254 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1310 3424 203 18 9 chr4 95075866 95076343 -60553777 + Lx9 LINE L1 2472 2951 -2896 1 1310 2986 214 68 36 chr4 95076355 95077165 -60552955 + Lx9 LINE L1 4812 5682 -1962 1 1310 198 0 0 0 chr4 95077165 95077187 -60552933 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1310 410 103 0 0 chr4 95077187 95077226 -60552894 + Lx9 LINE L1 5683 5705 -1939 1 1310 2686 199 118 3 chr4 95077215 95077850 -60552270 + Lx9 LINE L1 6935 7642 -2 1 1310 27 87 0 0 chr4 95077908 95077977 -60552143 + AT_rich Low_complexity Low_complexity 1 69 0 1 1310 276 310 98 30 chr4 95078427 95078560 -60551560 + MER5A DNA MER1_type 22 163 -26 1 1310 243 245 16 197 chr4 95078564 95078691 -60551429 + ORR1E LTR MaLR 3 106 -253 1 1310 1228 275 21 75 chr4 95078722 95079095 -60551025 - ORR1E LTR MaLR -6 353 1 1 1310 3645 299 97 34 chr4 95079095 95079253 -60550867 - ORR1E-int LTR MaLR -53 1527 1365 1 1310 5309 196 28 23 chr4 95079253 95079615 -60550505 + Lx5 LINE L1 6082 6437 -613 1 1310 516 45 0 0 chr4 95079615 95079682 -60550438 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1310 5309 196 28 23 chr4 95079682 95080273 -60549847 + Lx5 LINE L1 6438 7040 -10 1 1310 3645 299 97 34 chr4 95080273 95080881 -60549239 - ORR1E-int LTR MaLR -216 1364 726 1 1310 1046 127 179 5 chr4 95080881 95081071 -60549049 + URR1B DNA MER1_type 2 224 -1 1 1310 3645 299 97 34 chr4 95081071 95081651 -60548469 - ORR1E-int LTR MaLR -855 725 94 1 1310 1101 72 58 0 chr4 95081652 95081791 -60548329 + B1_Mm SINE Alu 1 147 0 1 1310 189 139 0 0 chr4 95081795 95081838 -60548282 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1310 727 243 11 53 chr4 95081928 95082115 -60548005 - ORR1E LTR MaLR 0 379 201 1 1310 758 224 27 16 chr4 95082164 95082350 -60547770 - ORR1E LTR MaLR -168 191 4 1 1310 219 139 0 0 chr4 95083348 95083384 -60546736 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1310 220 269 79 43 chr4 95083568 95083708 -60546412 - MIRb SINE MIR -11 257 113 1 1310 316 345 140 6 chr4 95085553 95085731 -60544389 + MIRb SINE MIR 22 223 -45 1 1310 321 26 0 0 chr4 95085965 95086003 -60544117 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1310 284 186 25 114 chr4 95086013 95086092 -60544028 - Charlie4z DNA MER1_type -77 90 19 1 1310 202 233 60 28 chr4 95086834 95086918 -60543202 - L2a LINE L2 -2 3424 3300 1 1310 1610 72 50 67 chr4 95087190 95087472 -60542648 + MT-int LTR MaLR 552 828 -270 1 1310 297 0 0 0 chr4 95087527 95087560 -60542560 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1310 2141 280 168 24 chr4 95087686 95088604 -60541516 + Lx8 LINE L1 6392 7441 -32 1 1310 303 223 113 24 chr4 95088604 95088728 -60541392 + MER33 DNA MER1_type 189 323 -1 1 1310 697 276 58 69 chr4 95089064 95089538 -60540582 - Lx8 LINE L1 -1616 6080 5625 1 1310 186 315 0 36 chr4 95089922 95089978 -60540142 - L2 LINE L2 -3109 310 257 1 1310 251 311 56 0 chr4 95090138 95090228 -60539892 - MER5A DNA MER1_type -23 166 72 1 1310 454 243 54 20 chr4 95090908 95091055 -60539065 - MER33 DNA MER1_type -79 245 94 1 1310 216 288 30 0 chr4 95091173 95091239 -60538881 + MIRb SINE MIR 179 246 -22 1 1310 218 401 14 14 chr4 95091579 95091718 -60538402 + MIRb SINE MIR 13 151 -117 1 1310 838 146 17 52 chr4 95092160 95092333 -60537787 + URR1A DNA MER1_type 52 218 -8 1 1310 868 272 4 89 chr4 95092355 95092625 -60537495 + MTEa LTR MaLR 121 367 -12 1 1310 597 136 0 31 chr4 95093086 95093215 -60536905 + GA-rich Low_complexity Low_complexity 1 125 0 1 1310 14214 154 10 4 chr4 95094177 95097308 -60532812 - Lx LINE L1 -5 6649 3507 1 1310 257 328 74 16 chr4 95097603 95097724 -60532396 - MLT1A1 LTR MaLR -21 387 260 1 1310 566 286 67 81 chr4 95098059 95098356 -60531764 - RLTR26 LTR ERVK -181 461 169 1 1310 854 109 38 23 chr4 95098530 95098662 -60531458 - B2_Mm2 SINE B2 -61 134 1 1 1310 509 119 48 0 chr4 95098662 95098744 -60531376 + B2_Mm1t SINE B2 96 181 -12 1 1310 415 64 330 26 chr4 95098755 95098867 -60531253 + B2_Mm2 SINE B2 47 192 -3 1 1310 3190 141 64 2 chr4 95099683 95100181 -60529939 - RLTR24 LTR ERV1 0 529 1 1 1310 300 53 0 0 chr4 95100528 95100566 -60529554 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1310 235 286 0 0 chr4 95100894 95100943 -60529177 - 4.5SRNA scRNA scRNA 0 94 46 1 1310 239 292 0 0 chr4 95100901 95100949 -60529171 - PB1D10 SINE Alu -28 89 42 1 1310 1160 92 7 0 chr4 95102117 95102259 -60527861 - B1_Mus2 SINE Alu 0 147 5 1 1310 288 255 6 2 chr4 95102272 95102367 -60527753 + L1M5 LINE L1 5344 5440 -919 1 1310 729 244 24 0 chr4 95102371 95102539 -60527581 + B4 SINE B4 11 182 -110 1 1310 527 284 137 0 chr4 95102659 95102849 -60527271 + L1M5 LINE L1 5495 5710 -452 1 1310 1491 149 14 0 chr4 95103509 95103731 -60526389 - URR1B DNA MER1_type 0 225 1 1 1310 1079 277 33 122 chr4 95103836 95104375 -60525745 - RLTR12B LTR ERVK -32 496 6 1 1310 246 277 142 27 chr4 95104693 95104858 -60525262 - MIRb SINE MIR -1 261 77 1 1310 199 327 18 0 chr4 95105509 95105564 -60524556 - MIR SINE MIR -80 128 73 1 1310 306 300 33 22 chr4 95106255 95106347 -60523773 - PB1D10 SINE Alu -3 114 22 1 1310 232 270 69 20 chr4 95106993 95107095 -60523025 + L1MC LINE L1 4845 4951 -1195 1 1310 860 237 130 0 chr4 95107100 95107307 -60522813 + Lx9 LINE L1 7100 7333 -311 1 1310 1308 286 54 28 chr4 95107362 95107943 -60522177 + L1MB8 LINE L1 5177 5771 -407 1 1310 630 267 74 23 chr4 95108059 95108274 -60521846 + L1MB8 LINE L1 5767 5992 -186 1 1310 421 241 77 47 chr4 95108315 95108485 -60521635 - Lx9 LINE L1 -2 7642 7468 1 1310 510 213 64 0 chr4 95108491 95108632 -60521488 + L1MB8 LINE L1 6023 6172 -6 1 1310 2268 197 2 14 chr4 95108746 95109164 -60520956 + MTC LTR MaLR 1 413 -8 1 1310 1416 45 0 0 chr4 95109765 95109941 -60520179 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 1 1310 398 312 66 108 chr4 95110117 95110422 -60519698 + MLT1L LTR MaLR 140 431 -179 1 1310 223 193 18 0 chr4 95110566 95110615 -60519505 + MIRc SINE MIR 56 108 -100 1 1310 534 252 58 52 chr4 95110619 95110774 -60519346 - MER5A DNA MER1_type 0 189 34 1 1310 300 116 88 34 chr4 95112270 95112340 -60517780 - L1MB3 LINE L1 -263 5905 5837 1 1310 1631 188 80 9 chr4 95112346 95112684 -60517436 - ORR1C1 LTR MaLR -14 364 3 1 1310 3540 159 29 23 chr4 95112686 95112763 -60517357 - ORR1C1-int LTR MaLR -6 1503 1428 1 1310 4930 110 51 3 chr4 95112763 95113466 -60516654 + RMER19A LTR ERVK 1 737 0 1 1310 3540 159 29 23 chr4 95113466 95114069 -60516051 - ORR1C1-int LTR MaLR -82 1427 820 1 1310 1859 191 65 109 chr4 95114069 95114610 -60515510 - RMER19C LTR ERVK -2 609 93 1 1310 2564 208 47 2 chr4 95114610 95115117 -60515003 - RMER13B LTR ERVK 0 908 379 1 1310 1821 192 18 39 chr4 95115117 95115611 -60514509 + RLTR31_Mm LTR ERVK 1 440 -144 1 1310 2301 133 8 3 chr4 95115627 95116003 -60514117 - RMER13B LTR ERVK -525 383 6 1 1310 430 188 10 50 chr4 95116017 95116118 -60514002 + RLTR17 LTR ERVK 596 692 0 1 1310 2724 211 90 18 chr4 95116197 95116407 -60513713 - ORR1C1-int LTR MaLR -687 822 590 1 1310 1884 94 18 4 chr4 95116407 95116684 -60513436 + L1_Mus4 LINE L1 6351 6631 -5 2 1310 2724 211 90 18 chr4 95116684 95117240 -60512880 - ORR1C1-int LTR MaLR -920 589 1 1 1310 738 160 134 3 chr4 95117240 95117529 -60512591 - ORR1C1 LTR MaLR 0 367 1 1 1310 1090 272 57 94 chr4 95117594 95118489 -60511631 - L1M3 LINE L1 -448 5732 4867 2 1310 270 179 36 0 chr4 95118489 95118545 -60511575 + ORR1D2 LTR MaLR 1 58 -312 2 1310 274 216 0 0 chr4 95118547 95118598 -60511522 + RLTR18B LTR ERVK 1 51 -461 2 1310 1371 152 0 13 chr4 95118595 95118834 -60511286 + RLTR18B LTR ERVK 270 505 -7 2 1310 938 239 119 18 chr4 95118850 95118939 -60511181 + ORR1D2 LTR MaLR 61 165 -205 2 1310 907 89 57 0 chr4 95118939 95119062 -60511058 + B1_Mus1 SINE Alu 2 131 -17 2 1310 938 239 119 18 chr4 95119062 95119249 -60510871 + ORR1D2 LTR MaLR 166 364 -6 2 1310 215 250 0 0 chr4 95119387 95119435 -60510685 - ID4 SINE ID 0 83 36 2 1310 357 232 116 0 chr4 95119963 95120058 -60510062 + L1M3 LINE L1 3961 4066 -2074 2 1310 375 379 0 32 chr4 95120120 95120278 -60509842 - RSINE1 SINE B4 0 165 13 2 1310 816 207 0 0 chr4 95120391 95120531 -60509589 - B1_Mur2 SINE Alu -7 142 3 2 1310 1107 272 48 6 chr4 95120537 95120892 -60509228 - L1M3 LINE L1 -1818 4322 3953 2 1310 1066 197 55 27 chr4 95121549 95121768 -60508352 + URR1B DNA MER1_type 1 225 0 2 1310 4928 142 99 7 chr4 95122159 95123036 -60507084 - RMER17B LTR ERVK 0 958 1 2 1310 3850 36 23 8 chr4 95124198 95124668 -60505452 - L1Md_F3 LINE L1 0 6584 6108 2 1310 9867 38 1 1 chr4 95124668 95126030 -60504090 + L1Md_F3 LINE L1 4697 6059 -525 2 1310 507 256 120 50 chr4 95126030 95126349 -60503771 - MLT1C LTR MaLR -35 355 62 2 1310 1963 131 68 28 chr4 95126349 95126743 -60503377 + RMER17C LTR ERVK 1 410 0 2 1310 507 253 134 25 chr4 95126743 95126781 -60503339 - MLT1C LTR MaLR -406 61 14 2 1310 423 0 0 0 chr4 95126932 95126979 -60503141 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1310 21 0 0 0 chr4 95127231 95127252 -60502868 + AT_rich Low_complexity Low_complexity 1 21 0 2 1310 453 66 0 0 chr4 95128346 95128407 -60501713 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1310 274 311 14 0 chr4 95129301 95129375 -60500745 - MIR SINE MIR -117 145 71 2 1310 214 271 187 41 chr4 95129935 95130058 -60500062 - MIR SINE MIR -115 147 7 2 1310 180 231 135 0 chr4 95131194 95131246 -60498874 + MIR SINE MIR 68 126 -136 2 1310 3155 68 2 5 chr4 95131359 95131760 -60498360 - MTB LTR MaLR 0 400 1 2 1310 291 280 0 0 chr4 95131825 95131894 -60498226 + ID4 SINE ID 9 77 -75 2 1310 531 0 0 0 chr4 95133149 95133208 -60496912 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1310 630 307 175 42 chr4 95134731 95135343 -60494777 + Tigger7 DNA MER2_type 10 702 -3 2 1310 299 353 74 26 chr4 95136480 95136669 -60493451 - RMER13A LTR ERVK 0 860 663 2 1310 2523 234 66 12 chr4 95136705 95137355 -60492765 - RMER13A LTR ERVK -175 685 1 2 1310 1947 169 33 19 chr4 95137512 95137875 -60492245 - ORR1C1 LTR MaLR -10 368 1 2 1310 594 263 132 8 chr4 95138217 95138474 -60491646 + L1MA7 LINE L1 5996 6284 -7 2 1310 25 0 0 0 chr4 95138477 95138502 -60491618 + AT_rich Low_complexity Low_complexity 1 25 0 2 1310 772 305 168 17 chr4 95138502 95138919 -60491201 - MLT1F1 LTR MaLR -50 519 40 2 1310 909 137 174 0 chr4 95139152 95139342 -60490778 - URR1B DNA MER1_type 0 225 3 2 1310 1284 89 0 0 chr4 95140663 95140843 -60489277 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 1310 728 83 0 18 chr4 95140844 95140954 -60489166 + (TCTCC)n Simple_repeat Simple_repeat 5 112 0 2 1310 431 234 21 0 chr4 95142503 95142597 -60487523 - PB1D10 SINE Alu -1 116 21 2 1310 201 74 0 0 chr4 95145138 95145165 -60484955 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1310 427 329 93 7 chr4 95145432 95145711 -60484409 - MER2 DNA MER2_type -18 327 25 2 1310 326 325 94 6 chr4 95145730 95145895 -60484225 - MLT1H1 LTR MaLR -323 226 45 2 1310 207 341 47 0 chr4 95146308 95146393 -60483727 + MIRm SINE MIR 69 157 -119 2 1310 1040 139 0 11 chr4 95147087 95147269 -60482851 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1310 630 71 0 0 chr4 95147477 95147561 -60482559 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 2 1310 333 0 0 0 chr4 95147562 95147599 -60482521 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 2 1310 2372 76 71 24 chr4 95147601 95147991 -60482129 - L1_Mus1 LINE L1 0 6567 6215 2 1310 1203 55 0 0 chr4 95148034 95148179 -60481941 - B1_Mm SINE Alu 0 147 3 2 1310 199 73 73 0 chr4 95148230 95148271 -60481849 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1310 216 0 0 0 chr4 95148359 95148383 -60481737 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1310 432 246 76 97 chr4 95148502 95148856 -60481264 + MTEa LTR MaLR 24 379 0 2 1310 561 88 0 0 chr4 95148912 95148992 -60481128 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1310 214 292 196 31 chr4 95149486 95149680 -60480440 + MIR SINE MIR 10 235 -27 2 1310 457 242 142 13 chr4 95149754 95149909 -60480211 - B4 SINE B4 -14 278 104 2 1310 270 0 0 0 chr4 95149923 95149953 -60480167 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1310 465 90 0 0 chr4 95150210 95150277 -60479843 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1310 297 282 12 0 chr4 95150861 95150946 -60479174 + MIR SINE MIR 45 130 -78 2 1310 263 264 138 39 chr4 95151277 95151407 -60478713 - MLT1D LTR MaLR -362 143 1 2 1310 572 272 12 14 chr4 95152250 95152421 -60477699 + B3A SINE B2 1 168 -48 2 1310 474 18 0 0 chr4 95152424 95152479 -60477641 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1310 386 293 141 39 chr4 95153089 95153373 -60476747 + L1MB5 LINE L1 5829 6141 -33 2 1310 232 376 35 56 chr4 95153386 95153583 -60476537 - MLT1J LTR MaLR -94 418 226 2 1310 225 0 0 0 chr4 95154715 95154740 -60475380 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1310 190 282 42 0 chr4 95154740 95154811 -60475309 - MIRm SINE MIR -129 147 74 2 1310 227 289 41 72 chr4 95155374 95155471 -60474649 + LTR33 LTR ERVL 412 505 -10 2 1310 237 197 15 15 chr4 95157510 95157577 -60472543 - Lx8 LINE L1 0 7473 7407 2 1310 1041 251 204 33 chr4 95157578 95157823 -60472297 - RMER4B LTR ERVK 0 585 281 2 1310 351 125 0 0 chr4 95157823 95157895 -60472225 + (CAG)n Simple_repeat Simple_repeat 1 72 0 2 1310 1041 251 204 33 chr4 95157895 95158135 -60471985 - RMER4B LTR ERVK -305 280 17 2 163 1170 307 58 82 chr4 95158142 95158730 -60471390 - Lx8 LINE L1 -72 7401 6828 2 1311 2749 111 35 21 chr4 95158743 95159175 -60470945 + Lx LINE L1 6212 6649 -5 2 1311 512 42 0 14 chr4 95159914 95159943 -60470177 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1311 507 33 0 0 chr4 95159943 95160004 -60470116 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1311 512 42 0 14 chr4 95160004 95160046 -60470074 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1311 943 97 0 0 chr4 95160048 95160182 -60469938 - B1_Mus1 SINE Alu -1 147 14 2 1311 409 176 43 128 chr4 95160092 95160209 -60469911 - MT2B LTR ERVL -344 257 151 2 1311 383 284 50 100 chr4 95160182 95160226 -60469894 - B4A SINE B4 -64 226 58 2 1311 437 353 145 25 chr4 95160692 95161099 -60469021 - MLT2B1 LTR ERVL -40 480 25 2 1311 607 292 63 36 chr4 95161260 95161512 -60468608 - MLT1B LTR MaLR -129 261 3 2 1311 504 0 0 0 chr4 95161659 95161715 -60468405 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1311 24 0 0 0 chr4 95161777 95161801 -60468319 + AT_rich Low_complexity Low_complexity 1 24 0 2 1311 601 239 35 0 chr4 95161970 95162083 -60468037 - B3A SINE B2 -80 118 2 2 1311 252 0 0 0 chr4 95162085 95162113 -60468007 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1311 291 273 29 57 chr4 95162114 95162219 -60467901 - MTC LTR MaLR -222 199 98 2 1311 2249 116 0 0 chr4 95163061 95163378 -60466742 - L1_Mm LINE L1 -1255 4628 4312 2 1311 677 85 17 8 chr4 95163378 95163497 -60466623 + L1_Mus3 LINE L1 6519 6638 0 2 1311 815 78 9 0 chr4 95163513 95163629 -60466491 + (GAA)n Simple_repeat Simple_repeat 2 118 0 2 1311 357 50 0 91 chr4 95163667 95163724 -60466396 + B1_Mm SINE Alu 86 137 -10 2 1311 347 0 23 0 chr4 95163724 95163767 -60466353 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1311 8183 34 0 0 chr4 95164003 95165578 -60464542 - L1Md_T LINE L1 0 6582 5009 2 1311 1201 55 0 0 chr4 95165726 95165872 -60464248 + B1_Mus1 SINE Alu 3 148 0 2 1311 332 311 85 27 chr4 95165882 95166081 -60464039 + MLT1A0 LTR MaLR 189 365 0 2 1311 24 0 0 0 chr4 95167619 95167643 -60462477 + AT_rich Low_complexity Low_complexity 1 24 0 2 1311 310 370 47 17 chr4 95168944 95169241 -60460879 - ERVL-B4-int LTR ERVL -830 4884 4579 2 1311 2833 142 59 12 chr4 95169577 95170068 -60460052 + RMER20A LTR ERVK 3 516 0 2 1311 417 330 41 11 chr4 95170384 95170651 -60459469 - HERV16-int LTR ERVL -2914 2082 1808 2 1311 28 29 0 0 chr4 95171386 95171421 -60458699 + AT_rich Low_complexity Low_complexity 1 35 0 2 1311 215 31 31 0 chr4 95171882 95171914 -60458206 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1311 24 0 0 0 chr4 95171998 95172022 -60458098 + AT_rich Low_complexity Low_complexity 1 24 0 2 1311 381 348 39 6 chr4 95172340 95172522 -60457598 + ORR1E LTR MaLR 1 188 -171 2 1311 342 100 0 0 chr4 95172547 95172607 -60457513 + (TCTG)n Simple_repeat Simple_repeat 1 60 0 2 1311 602 89 0 11 chr4 95172654 95172745 -60457375 + (TCTCCC)n Simple_repeat Simple_repeat 2 91 0 2 1311 1507 270 77 46 chr4 95173023 95173544 -60456576 + RCHARR1 DNA MER1_type 3 539 -435 2 1311 528 217 35 87 chr4 95173533 95173705 -60456415 + RCHARR1 DNA MER1_type 812 974 0 2 1311 206 341 106 0 chr4 95174857 95174942 -60455178 - MIRc SINE MIR -79 189 96 2 1311 1211 55 0 0 chr4 95175124 95175270 -60454850 + B1_Mm SINE Alu 2 147 0 2 1311 1391 90 0 26 chr4 95175526 95175719 -60454401 - B2_Mm2 SINE B2 -7 188 1 2 1311 245 146 21 0 chr4 95175910 95175958 -60454162 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1311 219 133 0 0 chr4 95175967 95176012 -60454108 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1311 36764 9 0 1 chr4 95176442 95182652 -60447468 + L1Md_A LINE L1 1 5586 -297 3 1311 9044 3 0 0 chr4 95182652 95183648 -60446472 + L1Md_A LINE L1 5587 6582 0 3 1311 715 284 77 19 chr4 95185120 95185328 -60444792 - ID_B1 SINE B4 -4 220 1 3 1311 205 379 86 0 chr4 95185866 95185982 -60444138 + L2b LINE L2 3250 3375 0 3 1311 306 192 0 99 chr4 95186085 95186166 -60443954 + Lx9 LINE L1 7400 7472 -172 3 1311 375 78 0 0 chr4 95186169 95186220 -60443900 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1311 488 254 101 0 chr4 95186485 95186623 -60443497 + L2a LINE L2 3270 3421 -5 3 1311 216 342 124 56 chr4 95186725 95186886 -60443234 - MIRb SINE MIR -96 172 1 3 1311 661 303 21 39 chr4 95188161 95188446 -60441674 + L1MC4 LINE L1 7369 7648 -394 3 1311 629 266 94 29 chr4 95188490 95188792 -60441328 + ORR1D1 LTR MaLR 9 165 -209 3 1311 4201 72 18 12 chr4 95188792 95189358 -60440762 + L1Md_F2 LINE L1 6002 6570 -12 3 1311 385 272 205 19 chr4 95189358 95189386 -60440734 + ORR1D1-int LTR MaLR 1019 1044 -465 3 1311 763 119 104 7 chr4 95189359 95189494 -60440626 + ORR1D1-int LTR MaLR 1220 1367 -3 3 1311 1348 180 147 17 chr4 95189498 95189797 -60440323 + ORR1D1 LTR MaLR 37 374 0 3 1311 222 271 30 113 chr4 95190205 95190338 -60439782 - MIRb SINE MIR -16 252 131 3 1311 809 258 6 0 chr4 95190736 95190895 -60439225 + U1 snRNA snRNA 3 162 -3 3 1311 231 269 12 37 chr4 95191016 95191097 -60439023 + CT-rich Low_complexity Low_complexity 6 84 0 3 1311 673 108 18 0 chr4 95191229 95191340 -60438780 - Lx3A LINE L1 -9 6972 6860 3 1311 201 264 119 28 chr4 95191633 95191742 -60438378 - L3b LINE CR1 -95 387 269 3 1311 259 367 40 20 chr4 95192219 95192319 -60437801 + MIRb SINE MIR 26 127 -141 3 1311 845 213 38 52 chr4 95192606 95192819 -60437301 - B3 SINE B2 -4 212 3 3 1311 197 289 145 0 chr4 95192851 95192927 -60437193 + L2a LINE L2 3336 3422 -4 3 1311 1236 48 0 0 chr4 95193071 95193216 -60436904 + B1_Mus2 SINE Alu 1 145 -2 3 1311 382 286 119 129 chr4 95193884 95194278 -60435842 - MLT1B LTR MaLR 0 390 1 3 1311 293 233 54 8 chr4 95194621 95194751 -60435369 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 1311 219 125 0 0 chr4 95196967 95197007 -60433113 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1311 232 175 32 0 chr4 95197873 95197936 -60432184 + (TATG)n Simple_repeat Simple_repeat 2 66 0 3 1311 686 299 6 0 chr4 95197951 95198118 -60432002 - B3A SINE B2 -27 171 4 3 1311 280 302 35 70 chr4 95199174 95199288 -60430832 + ORR1E LTR MaLR 87 196 -163 3 1311 2004 113 29 65 chr4 95199415 95199756 -60430364 + ORR1A4 LTR MaLR 1 329 0 3 1311 2478 335 92 66 chr4 95199793 95201280 -60428840 + ORR1A4-int LTR MaLR 1 1527 -53 3 1311 243 293 59 35 chr4 95201280 95201365 -60428755 + ORR1A4 LTR MaLR 1 87 -272 3 1311 313 191 48 0 chr4 95201853 95201958 -60428162 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1311 182 389 10 21 chr4 95202073 95202170 -60427950 + L2 LINE L2 2906 3001 -418 3 1311 241 206 49 0 chr4 95202548 95202650 -60427470 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1311 225 355 79 35 chr4 95202819 95202933 -60427187 + LTR33A_ LTR ERVL 84 202 -329 3 1311 375 259 104 22 chr4 95204320 95204454 -60425666 + MER104 DNA Tc2 3 147 -34 3 1311 283 351 104 62 chr4 95204481 95204721 -60425399 - MIRb SINE MIR -18 250 1 3 1311 501 17 0 0 chr4 95205515 95205573 -60424547 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 3 1311 216 302 31 16 chr4 95205594 95205658 -60424462 - L2b LINE L2 -211 3164 3100 3 1311 578 374 48 64 chr4 95206021 95206430 -60423690 + MLT2B1 LTR ERVL 65 515 -39 3 1311 627 51 0 0 chr4 95206430 95206509 -60423611 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1311 225 384 53 70 chr4 95206509 95206540 -60423580 + MLT2B1 LTR ERVL 516 551 -3 3 1311 260 289 73 107 chr4 95208817 95208995 -60421125 + MLT1H1 LTR MaLR 135 306 -249 3 1311 23 0 0 0 chr4 95209140 95209163 -60420957 + AT_rich Low_complexity Low_complexity 1 23 0 3 1311 393 302 133 67 chr4 95209273 95209589 -60420531 - LTR37B LTR ERV1 -79 389 53 3 1311 796 231 0 0 chr4 95209657 95209800 -60420320 - ID_B1 SINE B4 0 224 82 3 1311 262 387 41 18 chr4 95210572 95210743 -60419377 + MIRb SINE MIR 23 197 -71 3 1311 3478 23 2 0 chr4 95210804 95211199 -60418921 + MTA_Mm LTR MaLR 1 396 0 3 1311 8908 34 19 2 chr4 95211199 95212278 -60417842 + MTA_Mm-int LTR MaLR 1 1098 0 3 1311 3478 23 2 0 chr4 95212278 95212673 -60417447 + MTA_Mm LTR MaLR 1 396 0 3 1311 378 0 0 0 chr4 95212793 95212835 -60417285 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1311 319 216 31 102 chr4 95215030 95215128 -60414992 + PB1D10 SINE Alu 27 117 0 3 1311 212 259 224 0 chr4 95215251 95215336 -60414784 + MIRb SINE MIR 155 258 -10 3 1311 195 129 0 0 chr4 95215477 95215508 -60414612 + (GGAGAA)n Simple_repeat Simple_repeat 6 36 0 3 1311 631 260 8 0 chr4 95216699 95216826 -60413294 + RSINE1 SINE B4 3 130 -35 3 1311 468 0 0 0 chr4 95216843 95216895 -60413225 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1311 263 387 75 0 chr4 95217526 95217632 -60412488 + MER45A DNA Tip100 20 133 -45 3 1311 1071 243 88 18 chr4 95217954 95218297 -60411823 + ORR1D2 LTR MaLR 2 368 -2 3 1311 228 67 0 0 chr4 95218376 95218406 -60411714 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1311 305 262 38 0 chr4 95218818 95218898 -60411222 - MIRb SINE MIR -75 193 111 3 1311 1304 181 8 0 chr4 95219052 95219301 -60410819 - Lx7 LINE L1 -752 6944 6694 3 1311 386 188 0 0 chr4 95219302 95219382 -60410738 + Lx7 LINE L1 7617 7696 0 3 1311 21 36 0 0 chr4 95220569 95220597 -60409523 + AT_rich Low_complexity Low_complexity 1 28 0 3 1311 236 423 33 30 chr4 95221152 95221454 -60408666 + MLT1K LTR MaLR 259 561 -34 3 1311 229 315 9 18 chr4 95221857 95221970 -60408150 + (TATG)n Simple_repeat Simple_repeat 1 112 0 3 1311 298 268 29 176 chr4 95222188 95222324 -60407796 + ORR1E LTR MaLR 22 137 -228 3 1311 269 236 94 94 chr4 95222711 95222828 -60407292 - MLT1J LTR MaLR -122 390 274 3 1311 744 154 14 14 chr4 95223252 95223397 -60406723 - URR1A DNA MER1_type 0 226 82 3 1311 225 94 0 0 chr4 95223654 95223686 -60406434 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1311 288 77 0 0 chr4 95225551 95225590 -60404530 + (CAA)n Simple_repeat Simple_repeat 3 41 0 3 1311 414 283 136 13 chr4 95225769 95225943 -60404177 - L1MC LINE L1 -2372 3774 3573 3 1311 396 0 0 0 chr4 95225943 95225987 -60404133 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1311 414 283 136 13 chr4 95225987 95226048 -60404072 - L1MC LINE L1 -2574 3572 3510 3 1311 353 259 89 65 chr4 95226089 95226213 -60403907 - MTEb LTR MaLR -8 371 245 3 1311 917 170 42 59 chr4 95226214 95226451 -60403669 + MYSERV-int LTR ERVK 6308 6540 -10 3 1311 393 247 54 55 chr4 95226482 95226652 -60403468 - MTEb LTR MaLR -145 234 61 3 1311 567 0 0 0 chr4 95226774 95226837 -60403283 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 3 1311 599 266 105 11 chr4 95226880 95227146 -60402974 - L1MA9 LINE L1 -119 6895 6605 3 1311 386 273 45 73 chr4 95227432 95227610 -60402510 + RMER15 LTR ERVL 330 502 -73 3 1311 245 98 24 0 chr4 95227696 95227737 -60402383 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 3 1311 644 264 78 125 chr4 95227774 95228108 -60402012 + MTD LTR MaLR 71 419 0 3 1311 240 269 29 29 chr4 95228108 95228177 -60401943 - MER2 DNA MER2_type -191 154 86 3 1311 622 271 86 37 chr4 95228236 95228504 -60401616 - L1MA9 LINE L1 -1161 5681 5401 3 1311 486 0 0 0 chr4 95228905 95228959 -60401161 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1311 249 33 0 0 chr4 95228979 95229009 -60401111 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1311 1072 251 44 37 chr4 95229009 95229282 -60400838 + B4A SINE B4 10 284 -8 3 1311 283 170 234 9 chr4 95229359 95229466 -60400654 - L1MA9 LINE L1 -1914 4928 4798 3 1311 309 267 33 0 chr4 95229477 95229567 -60400553 - L1MA9 LINE L1 -2560 4282 4190 3 1311 443 212 62 40 chr4 95229666 95229843 -60400277 - RMER17C LTR ERVK -133 277 97 3 1311 804 238 218 16 chr4 95229852 95230414 -60399706 - L1MA9 LINE L1 -2694 4151 3473 3 1311 288 244 51 0 chr4 95230404 95230482 -60399638 - L1MA9 LINE L1 -3968 2882 2801 3 1311 371 316 64 20 chr4 95231107 95231404 -60398716 - L1MA9 LINE L1 -4410 2439 2125 3 1311 1194 254 34 108 chr4 95231416 95231796 -60398324 + MTE2a LTR MaLR 13 364 -15 3 1311 380 276 134 90 chr4 95231936 95232190 -60397930 - L1MA9 LINE L1 -4823 1956 1694 3 1311 339 25 0 0 chr4 95232190 95232230 -60397890 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1311 216 0 0 0 chr4 95232230 95232253 -60397867 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1311 380 276 134 90 chr4 95232253 95232466 -60397654 - L1MA9 LINE L1 -5086 1693 1468 3 1311 269 323 43 62 chr4 95232681 95232892 -60397228 - L1MA9 LINE L1 -5723 1056 850 3 1311 598 315 79 25 chr4 95233034 95233706 -60396414 - L1MEc LINE L1 -2684 4322 3597 3 1311 225 0 0 0 chr4 95233917 95233942 -60396178 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1311 1278 48 0 0 chr4 95234386 95234531 -60395589 - B1_Mus2 SINE Alu -1 146 2 3 1311 246 195 0 0 chr4 95235453 95235494 -60394626 - L1MEc LINE L1 -3985 3117 3077 3 1311 487 292 130 14 chr4 95235607 95236107 -60394013 - L1MEc LINE L1 -4209 2878 2256 3 1311 516 273 106 42 chr4 95236098 95236457 -60393663 - L1MEc LINE L1 -4801 2286 1905 3 1311 262 270 82 4 chr4 95236481 95236570 -60393550 + B2_Mm2 SINE B2 4 110 -88 3 1311 290 272 105 54 chr4 95236641 95236975 -60393145 - L1MEc LINE L1 -5230 1857 1507 3 1311 856 95 15 0 chr4 95237165 95237302 -60392818 + (GA)n Simple_repeat Simple_repeat 1 139 0 3 1311 324 267 0 13 chr4 95237314 95237390 -60392730 - B4A SINE B4 -216 76 2 3 1311 368 300 8 8 chr4 95237463 95237584 -60392536 - L1MEc LINE L1 -5626 1461 1341 3 1311 204 40 0 0 chr4 95237927 95237952 -60392168 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1311 545 241 0 9 chr4 95239238 95239347 -60390773 - B1F SINE Alu 0 149 42 3 1311 1572 131 5 5 chr4 95240135 95240357 -60389763 - URR1A DNA MER1_type -1 225 4 3 1311 1078 233 184 37 chr4 95241168 95241489 -60388631 - ORR1D2 LTR MaLR -1 369 2 3 1311 29 28 0 0 chr4 95241543 95241579 -60388541 + AT_rich Low_complexity Low_complexity 1 36 0 3 1311 929 214 0 6 chr4 95241633 95241802 -60388318 + B3 SINE B2 3 170 -46 3 1311 750 260 56 15 chr4 95241800 95241995 -60388125 + MTD LTR MaLR 217 419 0 3 1311 356 145 29 0 chr4 95242064 95242133 -60387987 + GA-rich Low_complexity Low_complexity 2 72 0 3 1311 306 0 0 0 chr4 95242413 95242447 -60387673 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1311 665 176 57 40 chr4 95242527 95242651 -60387469 + B3 SINE B2 1 126 -90 3 1311 609 14 0 0 chr4 95243221 95243291 -60386829 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1311 2378 201 125 45 chr4 95243294 95243744 -60386376 - Lx5 LINE L1 0 7050 6540 3 1311 1217 75 14 0 chr4 95243744 95243890 -60386230 + B1_Mus1 SINE Alu 1 148 0 3 1311 2378 201 125 45 chr4 95243890 95244023 -60386097 - Lx5 LINE L1 -511 6539 6420 3 1311 2471 200 10 12 chr4 95244020 95244532 -60385588 + Lx5 LINE L1 5896 6406 -644 3 1311 1213 140 9 46 chr4 95245341 95245558 -60384562 - URR1B DNA MER1_type 0 225 17 3 1311 276 30 0 0 chr4 95248090 95248123 -60381997 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1311 902 294 77 38 chr4 95248365 95248730 -60381390 + MTE2b LTR MaLR 1 379 0 4 1311 255 31 0 0 chr4 95249006 95249038 -60381082 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 4 1311 186 352 136 0 chr4 95249399 95249524 -60380596 - L2b LINE L2 -24 3351 3210 4 1311 195 243 73 98 chr4 95252506 95252670 -60377450 - MIR3 SINE MIR -28 180 21 4 1311 375 291 112 17 chr4 95253639 95253817 -60376303 + MIR SINE MIR 32 226 -36 4 1311 218 339 158 21 chr4 95254205 95254395 -60375725 - MIRb SINE MIR -30 238 23 4 1311 274 344 24 0 chr4 95254747 95254872 -60375248 + (TATG)n Simple_repeat Simple_repeat 1 128 0 4 1311 979 262 49 21 chr4 95254872 95255156 -60374964 - B4 SINE B4 0 292 1 4 1311 241 328 63 39 chr4 95255170 95255297 -60374823 - MIRm SINE MIR 0 276 147 4 1311 282 276 170 44 chr4 95255371 95255553 -60374567 - MIRc SINE MIR 0 268 64 4 1311 213 263 0 0 chr4 95258268 95258306 -60371814 + B4A SINE B4 24 61 -231 4 1311 180 200 0 0 chr4 95258318 95258358 -60371762 + CT-rich Low_complexity Low_complexity 6 45 0 4 1311 367 265 45 52 chr4 95258359 95258514 -60371606 - HAL1-3A_ME LINE L1 -419 2439 2286 4 1311 210 147 0 0 chr4 95258514 95258548 -60371572 + (TTCCC)n Simple_repeat Simple_repeat 1 34 0 4 1311 435 303 98 29 chr4 95258549 95258794 -60371326 - Lx8 LINE L1 -50 7423 7162 4 1311 389 254 98 0 chr4 95258810 95258932 -60371188 - Lx8 LINE L1 -360 7113 6980 4 1311 306 134 0 0 chr4 95258945 95259012 -60371108 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1311 367 280 61 0 chr4 95259071 95259203 -60370917 - L1MC LINE L1 -1751 4395 4256 4 1311 561 42 0 0 chr4 95259225 95259297 -60370823 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1311 12326 63 1 1 chr4 95259340 95260893 -60369227 + L1Md_F2 LINE L1 4034 5586 -297 4 1311 8312 61 2 9 chr4 95260893 95261896 -60368224 + L1Md_F2 LINE L1 5587 6582 0 4 1311 492 315 122 40 chr4 95261981 95262689 -60367431 - L1M4 LINE L1 -1904 4242 3477 4 1311 247 236 0 0 chr4 95262844 95262899 -60367221 - L1M5 LINE L1 -621 5823 5769 4 1311 369 250 20 40 chr4 95263683 95263783 -60366337 - ID4_ SINE ID -53 99 2 4 1311 791 234 94 16 chr4 95263817 95264008 -60366112 - B3 SINE B2 -10 206 1 4 1311 1072 285 112 40 chr4 95264627 95264974 -60365146 - MTE2b LTR MaLR -7 372 1 4 1311 456 35 0 0 chr4 95265710 95265768 -60364352 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1311 1624 232 54 5 chr4 95265978 95266364 -60363756 + MTD LTR MaLR 1 405 -14 4 1311 258 32 0 0 chr4 95266395 95266426 -60363694 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1311 378 0 0 0 chr4 95267270 95267312 -60362808 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 4 1311 566 319 6 79 chr4 95267314 95267345 -60362775 - RSINE1 SINE B4 0 165 138 4 1311 279 0 0 0 chr4 95267345 95267376 -60362744 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1311 566 319 6 79 chr4 95267376 95267521 -60362599 - RSINE1 SINE B4 -28 137 2 4 1311 269 314 62 71 chr4 95268056 95268169 -60361951 - PB1D9 SINE Alu -8 112 1 4 1311 323 320 46 32 chr4 95268173 95268342 -60361778 - MIRb SINE MIR -92 184 3 4 1311 230 239 81 1 chr4 95268369 95268447 -60361673 - MIR SINE MIR -178 90 5 4 1311 180 390 33 33 chr4 95268982 95269104 -60361016 + MIR3 SINE MIR 38 159 -49 4 1311 180 254 55 0 chr4 95269234 95269289 -60360831 - MIRb SINE MIR -189 79 22 4 1311 654 311 50 15 chr4 95269602 95269801 -60360319 - 7SLRNA srpRNA srpRNA -106 208 3 4 1311 510 261 20 27 chr4 95270039 95270185 -60359935 - MER5A1 DNA MER1_type -1 165 21 4 1311 523 255 10 0 chr4 95270419 95270517 -60359603 - RSINE1 SINE B4 -61 104 6 4 1311 245 323 70 8 chr4 95271358 95271486 -60358634 + MER58B DNA MER1_type 118 253 -88 4 1311 196 362 65 84 chr4 95271635 95271849 -60358271 + L2b LINE L2 3131 3340 -35 4 1311 1310 149 43 0 chr4 95272827 95273035 -60357085 - URR1B DNA MER1_type -1 224 8 4 1311 477 0 0 0 chr4 95273216 95273269 -60356851 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1311 198 414 9 9 chr4 95273412 95273524 -60356596 + MIRb SINE MIR 19 130 -138 4 1311 306 290 21 11 chr4 95274006 95274100 -60356020 - MIRb SINE MIR -70 198 104 4 1311 380 333 84 14 chr4 95274323 95274536 -60355584 - MIR SINE MIR -27 235 8 4 1311 252 167 0 0 chr4 95274812 95274860 -60355260 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1311 188 407 19 62 chr4 95275027 95275187 -60354933 - L2 LINE L2 -477 2942 2790 4 1311 441 0 0 0 chr4 95275208 95275257 -60354863 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1311 343 287 104 123 chr4 95275773 95276091 -60354029 + MER102b DNA MER1_type 27 338 -3 4 1311 195 360 61 50 chr4 95276203 95276384 -60353736 + L2b LINE L2 3010 3192 -183 4 1311 218 253 40 13 chr4 95280248 95280324 -60349796 + CT-rich Low_complexity Low_complexity 4 81 0 4 1311 853 203 92 15 chr4 95280970 95281165 -60348955 + B3 SINE B2 1 210 -6 4 1311 222 330 50 72 chr4 95281231 95281377 -60348743 + MIR SINE MIR 25 162 -100 4 1311 699 46 0 0 chr4 95281377 95281464 -60348656 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 1311 222 330 50 72 chr4 95281464 95281539 -60348581 + MIR SINE MIR 163 241 -21 4 1311 890 276 43 86 chr4 95282964 95283360 -60346760 + MTE2a LTR MaLR 1 379 0 4 1311 229 151 38 0 chr4 95283846 95283899 -60346221 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 4 1311 211 354 39 8 chr4 95284304 95284432 -60345688 + MIRc SINE MIR 112 243 -25 4 1311 241 193 397 13 chr4 95287468 95287624 -60342496 - Lx9 LINE L1 -1 7643 7428 4 163 2096 115 25 3 chr4 95289130 95289452 -60340668 - ORR1A4 LTR MaLR 0 329 1 4 1312 294 313 9 9 chr4 95291616 95291732 -60338388 + CT-rich Low_complexity Low_complexity 2 117 0 4 1312 254 250 50 10 chr4 95291909 95292010 -60338110 + MIRb SINE MIR 75 179 -89 4 1312 234 318 0 11 chr4 95292092 95292181 -60337939 - B4A SINE B4 -3 289 202 4 1312 213 224 0 0 chr4 95292904 95292962 -60337158 + (TAA)n Simple_repeat Simple_repeat 1 58 0 4 1312 464 260 112 11 chr4 95293680 95293859 -60336261 - L1MC3 LINE L1 -7 7778 7582 4 1312 1278 227 80 3 chr4 95293865 95294179 -60335941 - RMER15 LTR ERVL 0 575 238 4 1312 1410 199 94 21 chr4 95294180 95294605 -60335515 - RMER13B LTR ERVK 0 908 453 4 1312 607 231 12 70 chr4 95294609 95294781 -60335339 - RMER15 LTR ERVL -395 180 19 4 1312 404 242 142 36 chr4 95294848 95295067 -60335053 - L1MC3 LINE L1 -200 7585 7344 4 1312 249 359 23 0 chr4 95295140 95295271 -60334849 - L1MC3 LINE L1 -600 7185 7052 4 1312 183 188 0 0 chr4 95295430 95295478 -60334642 + T-rich Low_complexity Low_complexity 2 49 0 4 1312 312 214 0 14 chr4 95295592 95295663 -60334457 + B1F SINE Alu 48 117 -32 4 1312 23 86 0 0 chr4 95295890 95295948 -60334172 + AT_rich Low_complexity Low_complexity 1 58 0 4 1312 2003 141 62 19 chr4 95295977 95296011 -60334109 - ORR1B1 LTR MaLR -8 386 358 4 1312 2628 55 61 0 chr4 95296011 95296337 -60333783 - ORR1A1 LTR MaLR 0 346 1 4 1312 2003 141 62 19 chr4 95296337 95296672 -60333448 - ORR1B1 LTR MaLR -37 357 1 4 1312 254 212 81 70 chr4 95296971 95297057 -60333063 + MTEb LTR MaLR 282 368 -11 4 1312 561 303 113 46 chr4 95298095 95298528 -60331592 - L1MB4 LINE L1 -27 6153 5692 4 1312 263 330 72 30 chr4 95298936 95299167 -60330953 - L1MB4 LINE L1 -501 5682 5429 4 1312 198 0 0 0 chr4 95299666 95299688 -60330432 + (TTA)n Simple_repeat Simple_repeat 2 23 0 4 1312 727 291 5 32 chr4 95300307 95300492 -60329628 + B3A SINE B2 10 189 -9 4 1312 3983 195 118 38 chr4 95300973 95301915 -60328205 + Lx5 LINE L1 6034 7050 0 4 1312 220 245 20 0 chr4 95303910 95303959 -60326161 + CT-rich Low_complexity Low_complexity 3 52 0 4 1312 333 0 0 0 chr4 95304069 95304106 -60326014 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1312 2151 53 7 62 chr4 95305229 95305533 -60324587 + L1_Mus2 LINE L1 6280 6566 0 4 1312 368 304 193 4 chr4 95305545 95305773 -60324347 + Arthur1C DNA Tip100 40 310 -53 4 1312 414 264 109 55 chr4 95306110 95306238 -60323882 + RSINE1 SINE B4 3 137 -28 4 1312 229 292 65 83 chr4 95306351 95306519 -60323601 - MTEb LTR MaLR -14 365 201 4 1312 417 20 0 0 chr4 95308597 95308647 -60321473 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1312 310 191 88 26 chr4 95309244 95309281 -60320839 + ID_B1 SINE B4 105 222 0 4 1312 506 40 27 0 chr4 95309281 95309355 -60320765 + B1_Mur4 SINE Alu 75 150 0 4 1312 303 28 0 0 chr4 95309357 95309393 -60320727 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1312 587 286 66 42 chr4 95311391 95311632 -60318488 + B4A SINE B4 7 253 -39 4 1312 202 315 126 0 chr4 95312036 95312147 -60317973 + MIR SINE MIR 112 236 -26 4 1312 268 355 43 0 chr4 95312841 95312934 -60317186 - PB1 SINE Alu -25 102 6 4 1312 1093 236 125 33 chr4 95313204 95313220 -60316900 - MTD LTR MaLR -8 411 396 4 1312 618 89 0 0 chr4 95313220 95313310 -60316810 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 4 1312 1093 236 125 33 chr4 95313310 95313661 -60316459 - MTD LTR MaLR -24 395 10 4 1312 932 88 0 7 chr4 95314545 95314682 -60315438 + (TTTC)n Simple_repeat Simple_repeat 4 139 0 4 1312 27 0 0 0 chr4 95315200 95315227 -60314893 + AT_rich Low_complexity Low_complexity 1 27 0 4 1312 686 167 0 8 chr4 95315851 95315984 -60314136 + GA-rich Low_complexity Low_complexity 2 133 0 4 1312 1974 208 25 2 chr4 95317322 95317723 -60312397 - MTC LTR MaLR -4 417 8 4 1312 297 263 81 91 chr4 95317986 95318195 -60311925 - MER82 DNA MER2_type -441 212 6 4 1312 204 97 0 0 chr4 95318246 95318277 -60311843 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1312 207 69 0 0 chr4 95319270 95319299 -60310821 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 4 1312 465 19 0 0 chr4 95320446 95320500 -60309620 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1312 540 30 0 0 chr4 95320515 95320581 -60309539 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1312 216 158 0 0 chr4 95320836 95320874 -60309246 + GA-rich Low_complexity Low_complexity 5 42 0 5 1312 250 241 208 48 chr4 95321665 95321896 -60308224 - L1MC4a LINE L1 -832 7050 6783 5 1312 9096 11 0 0 chr4 95321924 95323066 -60307054 - L1Md_T LINE L1 0 6582 5441 5 1312 540 213 43 22 chr4 95324108 95324247 -60305873 + B1_Mur1 SINE Alu 3 144 -5 5 1312 242 56 28 0 chr4 95324820 95324856 -60305264 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 1312 408 279 25 55 chr4 95326316 95326479 -60303641 + MIRb SINE MIR 111 268 0 5 1312 195 246 53 0 chr4 95326661 95326718 -60303402 - MIR SINE MIR -3 259 200 5 1312 405 0 0 0 chr4 95327066 95327111 -60303009 + (CCA)n Simple_repeat Simple_repeat 1 45 0 5 1312 260 186 0 17 chr4 95327373 95327433 -60302687 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1312 1782 145 7 0 chr4 95327570 95327859 -60302261 - Lx2B LINE L1 -4 6996 6706 5 1312 991 312 7 11 chr4 95329484 95329769 -60300351 + B4A SINE B4 9 292 0 5 1312 203 133 0 0 chr4 95329811 95329841 -60300279 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 5 1312 441 0 0 0 chr4 95330079 95330128 -60299992 + (TCG)n Simple_repeat Simple_repeat 1 49 0 5 1312 1005 9 0 0 chr4 95330128 95330242 -60299878 + (TTC)n Simple_repeat Simple_repeat 3 116 0 5 1312 1026 263 77 11 chr4 95331415 95331688 -60298432 + B4A SINE B4 1 291 -1 5 1312 234 0 0 0 chr4 95331705 95331731 -60298389 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1312 396 0 0 0 chr4 95331731 95331774 -60298346 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1312 437 34 17 0 chr4 95332704 95332763 -60297357 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1312 627 328 46 33 chr4 95334813 95335116 -60295004 - MER2 DNA MER2_type -30 315 9 5 1312 225 315 17 92 chr4 95335250 95335369 -60294751 + MER21B LTR ERV1 6 115 -748 5 1312 490 294 95 35 chr4 95335703 95336005 -60294115 + MER21B LTR ERV1 377 741 -122 5 1312 182 394 19 0 chr4 95336341 95336445 -60293675 + L2c LINE L2 3242 3347 -40 5 1312 391 268 158 60 chr4 95336481 95336664 -60293456 - MER20 DNA MER1_type -2 217 17 5 1312 261 0 0 0 chr4 95336713 95336742 -60293378 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1312 188 299 126 0 chr4 95337529 95337616 -60292504 + L2c LINE L2 3289 3386 -1 5 1312 533 328 93 64 chr4 95337855 95338200 -60291920 - MLT1A0 LTR MaLR 0 365 11 5 1312 335 286 95 0 chr4 95338471 95338576 -60291544 - MIRc SINE MIR -74 194 80 5 1312 27 29 0 0 chr4 95339601 95339635 -60290485 + AT_rich Low_complexity Low_complexity 1 34 0 5 1312 253 250 0 0 chr4 95340309 95340358 -60289762 + polypyrimidine Low_complexity Low_complexity 8 56 0 5 1312 1090 117 6 6 chr4 95340358 95340538 -60289582 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1312 844 134 29 0 chr4 95340545 95340716 -60289404 + CT-rich Low_complexity Low_complexity 3 178 0 5 1312 475 201 18 12 chr4 95340727 95340898 -60289222 + CT-rich Low_complexity Low_complexity 3 174 0 5 1312 249 294 71 0 chr4 95341072 95341085 -60289035 - ID_B1 SINE B4 -128 96 6 5 1312 298 189 83 42 chr4 95341085 95341157 -60288963 - ID4_ SINE ID -3 80 6 5 1312 1188 55 0 0 chr4 95342261 95342407 -60287713 + B1_Mus2 SINE Alu 2 147 0 5 1312 22 0 0 0 chr4 95342407 95342429 -60287691 + AT_rich Low_complexity Low_complexity 1 22 0 5 1312 183 80 0 0 chr4 95342441 95342466 -60287654 + (TAA)n Simple_repeat Simple_repeat 2 26 0 5 1312 21 57 0 0 chr4 95342790 95342825 -60287295 + AT_rich Low_complexity Low_complexity 1 35 0 5 1312 2336 300 24 26 chr4 95342928 95342998 -60287122 - Lx9 LINE L1 -85 7559 7492 5 1312 213 94 0 0 chr4 95342998 95343030 -60287090 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1312 2336 300 24 26 chr4 95343030 95343927 -60286193 - Lx9 LINE L1 -153 7491 6594 5 1312 335 283 51 22 chr4 95343955 95344089 -60286031 - Lx9 LINE L1 -1173 6471 6362 5 1312 214 115 19 19 chr4 95344482 95344535 -60285585 + A-rich Low_complexity Low_complexity 3 55 0 5 1312 225 0 0 0 chr4 95344994 95345019 -60285101 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1312 355 349 7 20 chr4 95345511 95345663 -60284457 + RSINE1 SINE B4 4 153 -12 5 1312 378 0 0 0 chr4 95348291 95348333 -60281787 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1312 825 292 89 62 chr4 95349145 95349514 -60280606 + MTE2b LTR MaLR 1 379 0 5 1312 375 217 0 0 chr4 95349752 95349821 -60280299 - B3 SINE B2 -145 71 3 5 1312 365 0 0 22 chr4 95350533 95350579 -60279541 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1312 598 322 27 0 chr4 95350583 95350729 -60279391 - RSINE1 SINE B4 -13 152 3 5 1312 236 268 155 50 chr4 95350764 95350925 -60279195 + MIRb SINE MIR 57 234 -34 5 1312 195 42 0 0 chr4 95350984 95351008 -60279112 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1312 263 135 0 0 chr4 95352019 95352056 -60278064 - tRNA-Met_ tRNA tRNA -39 37 1 5 1312 275 257 121 7 chr4 95352244 95352385 -60277735 - Lx8 LINE L1 -291 7182 7026 5 1312 322 315 11 0 chr4 95352398 95352487 -60277633 + CT-rich Low_complexity Low_complexity 4 93 0 5 1312 570 286 34 51 chr4 95352487 95352723 -60277397 - Lx8 LINE L1 -528 6945 6714 5 1312 453 328 83 40 chr4 95353381 95353683 -60276437 - L1M6 LINE L1 -2579 3821 3507 5 1312 496 283 32 89 chr4 95354104 95354294 -60275826 - B4A SINE B4 -1 291 113 5 1312 398 245 27 36 chr4 95354516 95354626 -60275494 + B3A SINE B2 1 109 -89 5 1312 432 82 0 0 chr4 95354640 95354701 -60275419 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1312 31 88 0 0 chr4 95354701 95354781 -60275339 + AT_rich Low_complexity Low_complexity 1 80 0 5 1312 283 250 0 62 chr4 95355109 95355190 -60274930 + Lx9 LINE L1 7343 7418 -226 5 1312 339 85 0 0 chr4 95355190 95355237 -60274883 + (CATA)n Simple_repeat Simple_repeat 4 50 0 5 1312 531 116 32 32 chr4 95355258 95355383 -60274737 + Lx9 LINE L1 7513 7637 -7 5 1312 30 45 0 0 chr4 95355459 95355503 -60274617 + AT_rich Low_complexity Low_complexity 1 44 0 5 1312 398 53 18 0 chr4 95355575 95355632 -60274488 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1312 4329 217 33 6 chr4 95355638 95356641 -60273479 - Lx9 LINE L1 -250 7394 6365 5 1312 329 309 42 65 chr4 95357036 95357344 -60272776 - L1M6 LINE L1 -4664 1832 1532 5 1312 369 0 0 0 chr4 95357684 95357725 -60272395 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1312 490 259 26 18 chr4 95358547 95358652 -60271468 + B1F SINE Alu 1 108 -41 5 1312 486 0 0 0 chr4 95358652 95358706 -60271414 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1312 264 209 0 0 chr4 95358723 95358814 -60271306 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 5 1312 7469 54 3 5 chr4 95360100 95361125 -60268995 - L1Md_F2 LINE L1 -9 6573 5551 5 1312 4293 66 3 0 chr4 95361124 95361712 -60268408 + L1Md_F2 LINE L1 4947 5536 -347 5 1312 212 328 65 57 chr4 95361899 95362022 -60268098 + L2b LINE L2 3220 3343 -32 5 1312 370 326 47 10 chr4 95363210 95363402 -60266718 - L1MC5 LINE L1 -160 7801 7603 5 1312 289 273 10 0 chr4 95363932 95364031 -60266089 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1312 1106 130 45 0 chr4 95364701 95364878 -60265242 + B2_Mm2 SINE B2 3 187 -8 5 1312 287 264 54 45 chr4 95364909 95365020 -60265100 - MLT1J LTR MaLR -327 185 74 5 1312 23 54 0 0 chr4 95367021 95367058 -60263062 + AT_rich Low_complexity Low_complexity 1 37 0 5 1312 392 291 32 64 chr4 95368341 95368466 -60261654 + B3A SINE B2 48 168 -30 5 1312 29 28 0 0 chr4 95368485 95368521 -60261599 + AT_rich Low_complexity Low_complexity 1 36 0 5 1312 315 347 54 0 chr4 95369394 95369541 -60260579 - MIR3 SINE MIR -19 189 35 5 1312 270 330 31 58 chr4 95370460 95370611 -60259509 + MIRb SINE MIR 14 154 -54 5 1312 234 104 59 15 chr4 95371140 95371208 -60258912 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 5 1312 2191 268 209 15 chr4 95371751 95372759 -60257361 + Lx9 LINE L1 6388 7591 -53 5 1312 1634 284 22 21 chr4 95372790 95373794 -60256326 - Lx5 LINE L1 -18 7032 6123 5 1312 215 333 117 26 chr4 95374026 95374180 -60255940 - MIR SINE MIR -64 198 31 5 1312 1964 304 33 39 chr4 95375886 95376237 -60253883 - Lx9 LINE L1 -209 7435 7086 5 1312 198 0 0 0 chr4 95376237 95376259 -60253861 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1312 1964 304 33 39 chr4 95376259 95376734 -60253386 - Lx9 LINE L1 -559 7085 6614 5 1312 557 14 14 0 chr4 95376803 95376873 -60253247 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1312 441 0 0 0 chr4 95377468 95377517 -60252603 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1312 407 323 118 29 chr4 95377865 95378069 -60252051 - MIR SINE MIR -2 260 39 5 1312 240 64 0 60 chr4 95378693 95378743 -60251377 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 5 1312 243 0 0 0 chr4 95380440 95380467 -60249653 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1312 1070 136 22 28 chr4 95380513 95380694 -60249426 - B2_Mm2 SINE B2 -9 186 7 5 1312 307 113 97 0 chr4 95380706 95380768 -60249352 - Lx2 LINE L1 0 6997 6930 5 1312 242 160 58 39 chr4 95380768 95380813 -60249307 - MIR SINE MIR -114 154 105 5 1312 404 183 14 0 chr4 95381008 95381079 -60249041 - MER5A DNA MER1_type -74 115 44 5 1312 763 304 51 12 chr4 95382166 95382502 -60247618 - Lx9 LINE L1 -230 7414 7066 5 1312 554 207 66 117 chr4 95382564 95382761 -60247359 - Lx9 LINE L1 -554 7090 6904 5 1312 277 290 66 66 chr4 95383517 95383698 -60246422 - MER121 Unknown Unknown -83 329 149 5 1312 271 315 94 51 chr4 95384427 95384544 -60245576 - MIR SINE MIR -104 164 41 5 1312 367 298 24 24 chr4 95385325 95385449 -60244671 + MamRep137 DNA TcMar? 26 149 -295 5 1312 237 211 0 0 chr4 95385475 95385532 -60244588 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1312 510 308 13 40 chr4 95386422 95386574 -60243546 + RSINE1 SINE B4 2 149 -16 5 1312 308 231 139 8 chr4 95386615 95386737 -60243383 - Lx7 LINE L1 0 7696 7559 5 1312 542 261 17 0 chr4 95386952 95387071 -60243049 - B3 SINE B2 -94 122 2 6 1312 809 269 79 23 chr4 95387415 95387807 -60242313 + L1MB3 LINE L1 5510 5923 -260 6 1312 2377 87 182 0 chr4 95387813 95388343 -60241777 + Lx3_Mus LINE L1 6383 7009 0 6 1312 476 246 35 88 chr4 95388383 95388567 -60241553 + MLT1A LTR MaLR 19 185 -223 6 1312 503 274 61 49 chr4 95389069 95389315 -60240805 + L1MB3 LINE L1 5934 6182 -1 6 1312 217 369 69 29 chr4 95390463 95390636 -60239484 - L2c LINE L2 -221 3166 2987 6 1312 181 302 126 68 chr4 95391564 95391667 -60238453 + MER5A DNA MER1_type 59 167 -22 6 1312 188 256 100 25 chr4 95391662 95391782 -60238338 - MER5A DNA MER1_type -21 168 40 6 1312 622 175 0 0 chr4 95392227 95392324 -60237796 - B3 SINE B2 -6 210 114 6 1312 396 314 36 0 chr4 95392319 95392459 -60237661 + MER92B LTR ERV1 111 255 -381 6 1312 347 305 76 25 chr4 95392675 95392833 -60237287 - MLT2B4 LTR ERVL -129 427 262 6 1312 319 257 14 0 chr4 95392861 95392931 -60237189 - MLT2B4 LTR ERVL -452 104 34 6 1312 275 411 57 45 chr4 95393043 95393395 -60236725 - ORR1E LTR MaLR 0 359 4 6 1312 210 37 0 0 chr4 95393397 95393424 -60236696 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1312 269 291 61 35 chr4 95393551 95393665 -60236455 + RMER12 LTR ERVK 732 848 -474 6 1312 890 266 37 73 chr4 95393639 95393939 -60236181 - B4A SINE B4 0 292 4 6 1312 243 0 0 0 chr4 95394156 95394183 -60235937 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1312 435 19 0 0 chr4 95395698 95395750 -60234370 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1312 264 380 38 33 chr4 95397764 95397976 -60232144 - MIRb SINE MIR -2 266 54 6 1312 29 0 0 0 chr4 95401204 95401233 -60228887 + AT_rich Low_complexity Low_complexity 1 29 0 6 1312 683 172 0 7 chr4 95401475 95401610 -60228510 + CT-rich Low_complexity Low_complexity 2 135 0 6 1312 185 358 69 64 chr4 95403890 95404078 -60226042 + MIRc SINE MIR 24 212 -56 6 1312 227 267 22 25 chr4 95406169 95406276 -60223844 + ID4 SINE ID 2 104 -48 6 1312 1068 177 25 0 chr4 95406824 95407022 -60223098 + URR1B DNA MER1_type 23 225 0 6 1312 318 323 47 65 chr4 95407022 95407067 -60223053 - CYRA11_Mm Unknown Y-chromosome -442 175 135 6 1312 235 280 95 63 chr4 95407131 95407257 -60222863 - MLT1A1 LTR MaLR -1 407 278 6 1312 291 298 77 28 chr4 95407558 95407707 -60222413 + L2c LINE L2 3219 3370 -5 6 1312 230 176 20 0 chr4 95408997 95409048 -60221072 + (CATA)n Simple_repeat Simple_repeat 2 53 0 6 1312 234 0 0 0 chr4 95410552 95410578 -60219542 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1312 27 0 0 0 chr4 95412165 95412192 -60217928 + AT_rich Low_complexity Low_complexity 1 27 0 6 1312 249 33 0 0 chr4 95413503 95413533 -60216587 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1312 208 379 19 10 chr4 95414056 95414160 -60215960 - MIR3 SINE MIR -41 167 63 6 1312 248 323 61 15 chr4 95414489 95414621 -60215499 - MIRb SINE MIR -10 258 121 6 1312 2637 4 0 0 chr4 95415356 95415631 -60214489 - L1Md_A LINE L1 0 6582 6308 6 1312 319 319 54 38 chr4 95417924 95418246 -60211874 + MTEa LTR MaLR 9 379 0 6 1312 212 293 33 33 chr4 95419176 95419296 -60210824 + L2c LINE L2 3264 3383 -4 6 1312 216 0 0 0 chr4 95419802 95419826 -60210294 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1312 283 257 236 9 chr4 95419826 95419936 -60210184 - B1F SINE Alu -12 137 3 6 1312 501 17 0 0 chr4 95420063 95420121 -60209999 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1313 441 0 0 0 chr4 95421708 95421757 -60208363 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1313 254 336 138 18 chr4 95421928 95422210 -60207910 + L1MEg LINE L1 441 756 -5486 6 1313 480 231 124 41 chr4 95422446 95422713 -60207407 + Lx9 LINE L1 7348 7636 -8 6 1313 412 276 208 31 chr4 95422993 95423445 -60206675 + L1MEg LINE L1 3833 4364 -1782 6 1313 385 319 93 48 chr4 95423771 95424232 -60205888 + L1MEg LINE L1 4811 5292 -854 6 1313 769 265 19 14 chr4 95424273 95424480 -60205640 + B3 SINE B2 4 211 -5 6 1313 507 69 0 0 chr4 95424805 95424877 -60205243 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1313 341 17 69 0 chr4 95424868 95424926 -60205194 + (GGA)n Simple_repeat Simple_repeat 2 63 0 6 1313 196 347 96 11 chr4 95424994 95425183 -60204937 + MIRb SINE MIR 21 236 -32 6 1313 226 311 14 0 chr4 95425206 95425280 -60204840 + (TGG)n Simple_repeat Simple_repeat 3 77 0 6 1313 187 135 108 0 chr4 95425689 95425726 -60204394 - MIRc SINE MIR -111 157 117 6 1313 371 273 85 14 chr4 95426870 95427011 -60203109 - MER34 LTR ERV1 -68 474 324 6 1313 227 288 138 46 chr4 95427341 95427450 -60202670 - MIRm SINE MIR -113 163 45 6 1313 3563 33 15 0 chr4 95427575 95427972 -60202148 + L1Md_F2 LINE L1 6168 6570 -12 6 1313 210 71 0 0 chr4 95428936 95428964 -60201156 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1313 234 0 0 0 chr4 95429310 95429336 -60200784 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1313 481 322 7 7 chr4 95429464 95429617 -60200503 + B3A SINE B2 4 156 -42 6 1313 383 83 17 0 chr4 95429628 95429688 -60200432 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1313 23 0 0 0 chr4 95429704 95429727 -60200393 + AT_rich Low_complexity Low_complexity 1 23 0 6 1313 488 356 5 0 chr4 95430754 95430942 -60199178 - MER3 DNA MER1_type -19 190 2 6 1313 216 259 126 25 chr4 95430945 95431064 -60199056 - MIR SINE MIR -48 214 84 6 1313 185 338 14 27 chr4 95432042 95432115 -60198005 - L2c LINE L2 -5 3421 3350 6 1313 224 397 13 19 chr4 95432903 95433057 -60197063 + MIRb SINE MIR 23 175 -93 6 1313 301 153 0 0 chr4 95433798 95433851 -60196269 + MIRc SINE MIR 103 158 -110 6 1313 278 318 103 32 chr4 95434932 95435088 -60195032 - L2c LINE L2 -175 3212 3046 6 1313 211 264 21 62 chr4 95435615 95435712 -60194408 + MIRc SINE MIR 68 160 -108 6 1313 23 33 0 0 chr4 95436006 95436036 -60194084 + AT_rich Low_complexity Low_complexity 1 30 0 6 1313 1249 189 44 63 chr4 95437440 95437757 -60192363 - Lx7 LINE L1 0 7696 7386 6 1313 219 237 17 0 chr4 95437758 95437817 -60192303 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1313 35 24 0 0 chr4 95437826 95437868 -60192252 + AT_rich Low_complexity Low_complexity 1 42 0 6 1313 264 330 21 0 chr4 95438222 95438316 -60191804 - MIRc SINE MIR -116 152 57 6 1313 240 345 33 11 chr4 95438470 95438561 -60191559 + MIRb SINE MIR 93 185 -83 6 1313 436 248 163 14 chr4 95439969 95440116 -60190004 + L1MC3 LINE L1 6504 6672 -1113 6 1313 814 347 21 14 chr4 95440767 95441056 -60189064 + B4 SINE B4 2 292 0 6 1313 320 23 45 0 chr4 95442126 95442170 -60187950 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1313 198 103 0 0 chr4 95442852 95442881 -60187239 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1313 488 254 61 9 chr4 95442940 95443055 -60187065 - B1_Mur1 SINE Alu -11 138 18 6 1313 216 308 33 11 chr4 95444155 95444247 -60185873 - BC1_Mm scRNA scRNA -45 107 14 6 1313 191 88 29 0 chr4 95447244 95447278 -60182842 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1313 274 322 129 24 chr4 95447502 95447646 -60182474 + L4 LINE RTE 1587 1745 -284 6 1313 180 0 0 0 chr4 95447646 95447666 -60182454 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1313 274 322 129 24 chr4 95447666 95447731 -60182389 + L4 LINE RTE 1746 1817 -212 6 1313 227 175 0 0 chr4 95447732 95447772 -60182348 - MLT1D LTR MaLR -15 490 451 6 1313 351 0 0 0 chr4 95447792 95447831 -60182289 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1313 198 0 0 0 chr4 95447831 95447853 -60182267 + (CAGAGA)n Simple_repeat Simple_repeat 3 24 0 6 1313 246 32 0 0 chr4 95448334 95448365 -60181755 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1313 717 277 11 6 chr4 95448368 95448546 -60181574 - B3A SINE B2 -18 180 2 6 1313 184 318 157 11 chr4 95448831 95448920 -60181200 + MIRm SINE MIR 174 275 -1 6 1313 349 292 147 87 chr4 95450462 95450612 -60179508 - RSINE1 SINE B4 -4 161 3 6 1313 436 353 59 8 chr4 95450993 95451247 -60178873 + L2 LINE L2 2718 2984 -435 6 1313 318 269 156 25 chr4 95452854 95452976 -60177144 + B3A SINE B2 1 138 -60 6 1313 2811 173 18 4 chr4 95452978 95453477 -60176643 + Lx LINE L1 6098 6603 -51 6 1313 23 0 0 0 chr4 95455536 95455559 -60174561 + AT_rich Low_complexity Low_complexity 1 23 0 6 1313 471 173 67 0 chr4 95457064 95457168 -60172952 - Lx9 LINE L1 -17 7627 7517 6 1313 254 190 29 20 chr4 95457168 95457270 -60172850 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 6 1313 1211 122 6 11 chr4 95457270 95457452 -60172668 + Lx9 LINE L1 6824 7004 -640 6 1313 670 226 0 0 chr4 95457495 95457610 -60172510 + B1_Mur1 SINE Alu 24 138 -11 6 1313 262 338 7 36 chr4 95458799 95458937 -60171183 - MER121 Unknown Unknown -162 250 117 6 1313 493 302 16 27 chr4 95459650 95459837 -60170283 - B3A SINE B2 -4 194 10 6 1313 280 312 125 30 chr4 95460768 95460907 -60169213 - MIRb SINE MIR -108 160 6 6 1313 666 0 0 0 chr4 95461064 95461138 -60168982 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1313 468 0 0 0 chr4 95461138 95461190 -60168930 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1313 182 367 122 58 chr4 95462974 95463130 -60166990 - MIRm SINE MIR -92 184 19 6 1313 22 35 0 0 chr4 95463338 95463367 -60166753 + AT_rich Low_complexity Low_complexity 1 29 0 6 1313 377 252 33 47 chr4 95463584 95463598 -60166522 - CYRA11_Mm Unknown Y-chromosome -305 312 232 6 1313 723 151 8 8 chr4 95463598 95463725 -60166395 + URR1B DNA MER1_type 97 223 -2 6 1313 1558 237 51 21 chr4 95464423 95464800 -60165320 + MTD LTR MaLR 41 407 0 6 1313 249 302 104 0 chr4 95464865 95464961 -60165159 + MIR SINE MIR 40 145 -117 7 1313 453 298 87 47 chr4 95466454 95466708 -60163412 - MER95 LTR ERV -38 393 130 7 1313 372 303 55 21 chr4 95466705 95466850 -60163270 - MER95 LTR ERV -255 176 27 7 1313 323 57 27 41 chr4 95467047 95467120 -60163000 + (CAAAAA)n Simple_repeat Simple_repeat 2 73 0 7 1313 1932 45 0 0 chr4 95468040 95468262 -60161858 - L1Md_A LINE L1 -2 6580 6359 7 1313 1054 264 112 28 chr4 95468678 95468998 -60161122 - MTD LTR MaLR -5 414 68 7 1313 903 45 0 0 chr4 95468995 95469107 -60161013 - B1_Mm SINE Alu 0 147 36 7 1313 323 198 71 47 chr4 95469038 95469123 -60160997 - RLTR25B LTR ERVK -519 509 423 7 1313 358 338 23 63 chr4 95469138 95469359 -60160761 - MTE-int LTR MaLR -2 1578 1367 7 1313 541 293 110 38 chr4 95469374 95469665 -60160455 + Lx8 LINE L1 6875 7186 -287 7 1313 513 0 0 0 chr4 95469692 95469749 -60160371 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1313 198 250 141 94 chr4 95470571 95470699 -60159421 - MIRb SINE MIR -109 159 26 7 1313 297 0 0 0 chr4 95471342 95471375 -60158745 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1313 586 312 28 0 chr4 95471427 95471571 -60158549 - RSINE1 SINE B4 -15 150 3 7 1313 271 381 12 24 chr4 95471599 95471763 -60158357 - L2a LINE L2 -287 3139 2978 7 1313 371 344 144 24 chr4 95471783 95472081 -60158039 - L2a LINE L2 -519 2900 2567 7 1313 825 115 72 0 chr4 95472474 95472613 -60157507 + L1_Mur3 LINE L1 1624 1772 -4108 7 1313 2835 155 85 21 chr4 95472671 95473292 -60156828 - L1_Mur3 LINE L1 -3810 2070 1410 7 1313 2575 252 121 29 chr4 95473285 95474221 -60155899 - L1_Mur3 LINE L1 -6432 1296 275 7 1313 227 269 0 55 chr4 95475138 95475193 -60154927 + ID_B1 SINE B4 80 131 -93 7 1313 246 259 0 49 chr4 95475147 95475208 -60154912 + B1F1 SINE Alu 6 63 -86 7 1313 257 355 73 0 chr4 95477852 95477962 -60152158 - MIRb SINE MIR -123 145 28 7 1313 360 0 0 0 chr4 95478690 95478730 -60151390 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1313 198 349 116 21 chr4 95479112 95479236 -60150884 + MIR SINE MIR 30 157 -105 7 1313 425 262 92 25 chr4 95479283 95479479 -60150641 + L1MC4a LINE L1 5940 6148 -1734 7 1313 969 17 0 0 chr4 95479575 95479690 -60150430 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 7 1313 2990 178 40 97 chr4 95479690 95480053 -60150067 - RLTR26 LTR ERVK -1 641 324 7 1313 1164 71 14 0 chr4 95480053 95480193 -60149927 - B1_Mus1 SINE Alu -5 143 2 7 1313 2990 178 40 97 chr4 95480193 95480508 -60149612 - RLTR26 LTR ERVK -319 323 2 7 1313 463 230 250 0 chr4 95480509 95480661 -60149459 - RMER17A-int LTR ERVK 0 1728 1539 7 1313 591 153 43 0 chr4 95480686 95480849 -60149271 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 7 1313 1948 242 63 26 chr4 95481108 95481651 -60148469 - RLTR20B1 LTR ERVK 0 563 1 7 1313 657 25 0 0 chr4 95481819 95481898 -60148222 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1313 1013 141 0 45 chr4 95482058 95482214 -60147906 - B1_Mur4 SINE Alu 0 150 2 7 1313 204 67 0 0 chr4 95483054 95483084 -60147036 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1313 443 74 0 14 chr4 95483894 95483963 -60146157 + (TA)n Simple_repeat Simple_repeat 1 68 0 7 1313 423 107 0 0 chr4 95483963 95484038 -60146082 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1313 185 351 39 23 chr4 95484142 95484290 -60145830 - L2b LINE L2 -310 3116 2959 7 1313 234 0 0 0 chr4 95484347 95484373 -60145747 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1313 390 338 25 19 chr4 95484996 95485156 -60144964 - HAL1-2a_MD LINE L1 -517 2507 2347 7 1313 462 152 0 0 chr4 95485159 95485251 -60144869 + (TGG)n Simple_repeat Simple_repeat 3 94 0 7 1313 425 338 13 32 chr4 95485253 95485370 -60144750 - HAL1-2a_MD LINE L1 -525 2499 2385 7 1313 900 133 0 0 chr4 95485370 95485550 -60144570 + (TGG)n Simple_repeat Simple_repeat 1 180 0 7 1313 425 338 13 32 chr4 95485550 95485588 -60144532 - HAL1-2a_MD LINE L1 -640 2384 2347 7 1313 231 146 0 0 chr4 95485589 95485644 -60144476 + (TGG)n Simple_repeat Simple_repeat 1 55 0 7 1313 228 370 0 0 chr4 95487376 95487449 -60142671 + ID4 SINE ID 1 73 -10 7 1313 531 0 0 0 chr4 95487453 95487512 -60142608 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1313 185 242 86 57 chr4 95487859 95487929 -60142191 - MIRb SINE MIR -89 179 108 7 1313 542 310 48 48 chr4 95488233 95488460 -60141660 - MIRc SINE MIR -9 259 33 7 1313 1336 179 69 4 chr4 95489341 95489615 -60140505 - Lx2A1 LINE L1 -2 7006 6715 7 1313 263 102 42 28 chr4 95492405 95492476 -60137644 + T-rich Low_complexity Low_complexity 2 73 0 7 1313 423 279 45 30 chr4 95492522 95492655 -60137465 + RSINE1 SINE B4 2 136 -29 7 1313 1014 54 0 0 chr4 95492659 95492788 -60137332 + (TG)n Simple_repeat Simple_repeat 2 130 0 7 1313 431 312 0 0 chr4 95493940 95494052 -60136068 + ID_B1 SINE B4 79 190 -34 7 1313 196 242 14 101 chr4 95495689 95495758 -60134362 - L3 LINE CR1 -3714 775 713 7 1313 499 151 28 0 chr4 95495763 95495869 -60134251 + CT-rich Low_complexity Low_complexity 1 109 0 7 1313 812 173 282 12 chr4 95495879 95496049 -60134071 - B3 SINE B2 0 216 1 7 1313 1331 185 5 5 chr4 95496215 95496438 -60133682 - URR1B DNA MER1_type 0 225 3 7 1313 544 324 162 31 chr4 95496812 95497163 -60132957 - MLT1E2 LTR MaLR -35 592 196 7 1313 225 291 46 11 chr4 95497254 95497341 -60132779 - MLT1E2 LTR MaLR -455 169 80 7 1313 366 61 0 0 chr4 95498277 95498326 -60131794 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1313 193 340 52 78 chr4 95498706 95498859 -60131261 + L4 LINE RTE 1685 1833 -196 7 1313 593 253 64 43 chr4 95499765 95500000 -60130120 + RLTR15 LTR ERVK 1 240 -119 7 1313 312 268 12 47 chr4 95500522 95500608 -60129512 - B1F1 SINE Alu 0 149 67 1 1313 189 0 0 0 chr4 95500608 95500629 -60129491 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1313 7161 3 0 0 chr4 95500821 95501596 -60128524 - L1Md_A LINE L1 0 6582 5808 3 1313 3764 103 2 0 chr4 95501913 95502465 -60127655 - L1_Mm LINE L1 -1782 4101 3549 4 1313 5920 55 49 0 chr4 95502465 95503204 -60126916 + L1_Mus1 LINE L1 5792 6566 -1 5 1313 307 312 70 14 chr4 95503360 95503503 -60126617 + RSINE1 SINE B4 3 153 -12 6 1313 339 277 16 108 chr4 95505226 95505420 -60124700 - B2_Mm2 SINE B2 -16 179 4 7 1313 583 169 304 0 chr4 95505447 95505642 -60124478 - RMER4B LTR ERVK 0 585 332 8 1313 258 192 0 0 chr4 95505642 95505694 -60124426 + CT-rich Low_complexity Low_complexity 2 53 0 9 1313 217 244 72 60 chr4 95506462 95506545 -60123575 - MIR SINE MIR -109 99 16 1 1313 1123 88 7 0 chr4 95508984 95509131 -60120989 - B1_Mus1 SINE Alu 0 148 1 1 1313 678 54 21 0 chr4 95509206 95509299 -60120821 + B2_Mm2 SINE B2 1 95 -100 1 1313 902 87 0 0 chr4 95509318 95509445 -60120675 + B1_Mm SINE Alu 9 135 -12 1 1313 186 43 0 0 chr4 95509446 95509469 -60120651 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1313 405 122 0 0 chr4 95509877 95509951 -60120169 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 1313 243 61 0 0 chr4 95509953 95509986 -60120134 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1313 970 206 76 20 chr4 95510137 95510335 -60119785 + Lx9 LINE L1 7097 7305 -339 1 1313 317 119 204 35 chr4 95510340 95510453 -60119667 + Lx9 LINE L1 7512 7643 -1 1 1313 206 364 62 20 chr4 95511091 95511237 -60118883 - L2b LINE L2 -5 3370 3219 1 1313 205 266 0 0 chr4 95513129 95513193 -60116927 + MIRc SINE MIR 81 144 -124 1 1313 343 326 9 28 chr4 95514000 95514142 -60115978 - MIR SINE MIR -106 170 30 2 1313 208 0 62 0 chr4 95514290 95514322 -60115798 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1313 314 184 44 97 chr4 95515209 95515323 -60114797 - MIR SINE MIR -90 172 65 2 1313 456 263 75 92 chr4 95516780 95517019 -60113101 - L4 LINE RTE -105 1924 1690 2 1313 712 49 29 10 chr4 95517348 95517452 -60112668 + (TTTTC)n Simple_repeat Simple_repeat 2 107 0 2 1313 492 261 60 74 chr4 95517896 95518111 -60112009 + B3 SINE B2 1 212 -4 2 1313 23 68 0 0 chr4 95519334 95519378 -60110742 + AT_rich Low_complexity Low_complexity 1 44 0 2 1313 180 181 39 8 chr4 95519378 95519506 -60110614 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 1313 396 91 0 0 chr4 95520188 95520254 -60109866 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1313 654 13 0 0 chr4 95520254 95520329 -60109791 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1313 7759 69 3 2 chr4 95520984 95522240 -60107880 - L1_Mus2 LINE L1 0 6566 5309 3 1313 836 260 10 19 chr4 95523291 95523499 -60106621 + B3 SINE B2 8 213 -3 3 1313 247 257 38 0 chr4 95523757 95523862 -60106258 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1313 443 148 11 0 chr4 95524131 95524219 -60105901 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 1313 397 261 57 28 chr4 95525059 95525204 -60104916 - Charlie10a DNA MER1_type -20 260 112 3 1313 363 44 0 0 chr4 95526111 95526156 -60103964 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1313 194 259 232 22 chr4 95526818 95526956 -60103164 - MIRb SINE MIR -64 204 38 3 1313 354 382 45 14 chr4 95528374 95528594 -60101526 + MIRb SINE MIR 26 252 -16 3 1313 250 265 24 24 chr4 95532639 95532724 -60097396 + MIR SINE MIR 109 193 -69 3 1313 226 294 63 42 chr4 95533182 95533324 -60096796 + MER103 DNA DNA 22 166 0 3 1313 268 331 101 22 chr4 95533846 95534025 -60096095 - MIRb SINE MIR -40 228 36 4 1313 696 165 19 0 chr4 95534122 95534280 -60095840 + CT-rich Low_complexity Low_complexity 2 162 0 4 1313 664 264 0 0 chr4 95534281 95534421 -60095699 - B1_Mur4 SINE Alu -5 145 6 4 1313 207 162 0 0 chr4 95534540 95534577 -60095543 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1313 184 271 28 14 chr4 95535171 95535242 -60094878 - MIRc SINE MIR -176 92 21 4 1313 801 272 57 65 chr4 95535735 95536104 -60094016 - L1MB3 LINE L1 -4 6179 5814 4 1313 413 278 9 0 chr4 95536809 95536924 -60093196 + B1F SINE Alu 33 148 -1 4 1313 603 51 0 0 chr4 95536984 95537063 -60093057 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1313 510 276 93 65 chr4 95538495 95538851 -60091269 - Helitron1Na_Mam RC Helitron -485 577 212 4 1313 251 312 65 0 chr4 95538963 95539056 -60091064 - MIR SINE MIR -34 228 130 4 1313 232 254 30 0 chr4 95541073 95541140 -60088980 - B4A SINE B4 -192 100 32 5 1313 180 0 0 0 chr4 95541185 95541205 -60088915 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1313 182 308 187 8 chr4 95543664 95543798 -60086322 + MIR SINE MIR 13 170 -92 5 1313 199 94 0 0 chr4 95544556 95544588 -60085532 - MIRc SINE MIR -137 131 100 5 1313 1293 12 11 92 chr4 95545077 95545262 -60084858 + L1Md_F2 LINE L1 6413 6582 0 5 1313 1197 62 0 0 chr4 95546047 95546192 -60083928 + B1_Mm SINE Alu 1 145 -2 5 1313 312 309 14 6 chr4 95546561 95546682 -60083438 - MER45R DNA Tip100 -1456 125 2 5 1313 273 57 0 0 chr4 95546795 95546830 -60083290 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1313 203 158 0 0 chr4 95546830 95546868 -60083252 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1313 801 31 0 0 chr4 95547403 95547499 -60082621 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 1313 288 200 0 0 chr4 95548067 95548132 -60081988 + GA-rich Low_complexity Low_complexity 1 65 0 6 1313 471 301 92 6 chr4 95549179 95549353 -60080767 + MER58A DNA MER1_type 21 209 -15 6 1313 275 367 23 8 chr4 95549375 95549504 -60080616 - MIRb SINE MIR -111 157 27 6 1313 277 311 22 130 chr4 95549892 95550077 -60080043 + RSINE1 SINE B4 1 165 0 6 1314 461 314 79 0 chr4 95551668 95551808 -60078312 + RSINE1 SINE B4 3 153 -12 6 1314 216 0 0 0 chr4 95553275 95553299 -60076821 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1314 180 77 0 0 chr4 95553558 95553584 -60076536 + (TCC)n Simple_repeat Simple_repeat 3 28 0 6 1314 1268 305 82 59 chr4 95553584 95554657 -60075463 - L1MC3 LINE L1 -1464 6739 5650 6 1314 970 253 83 15 chr4 95554855 95555187 -60074933 + ORR1E LTR MaLR 1 403 -4 6 1314 343 274 137 15 chr4 95555188 95555458 -60074662 - L1MC3 LINE L1 -1100 5464 5162 6 1314 366 265 144 8 chr4 95555516 95555634 -60074486 - PB1D10 SINE Alu -14 135 2 6 1314 301 316 82 28 chr4 95555634 95555998 -60074122 - L1MC3 LINE L1 -1499 5065 4682 6 1314 1079 267 159 31 chr4 95556130 95556529 -60073591 - L1MC3 LINE L1 -1892 4672 4209 6 1314 423 0 0 0 chr4 95556529 95556576 -60073544 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 7 1314 1228 64 0 0 chr4 95556578 95556719 -60073401 - B1_Mm SINE Alu -6 141 1 7 1314 1079 267 159 31 chr4 95556719 95557112 -60073008 - L1MC3 LINE L1 -2356 4208 3778 6 1314 944 280 118 22 chr4 95557162 95557611 -60072509 + RMER5 LTR ERV1 33 524 -10 7 1314 631 187 9 0 chr4 95557637 95557744 -60072376 - PB1D9 SINE Alu 0 120 13 7 1314 400 259 95 31 chr4 95557925 95558140 -60071980 - L1MC3 LINE L1 -3138 3426 3179 6 1314 253 283 87 77 chr4 95558309 95558516 -60071604 - L1MC3 LINE L1 -3598 2966 2758 6 1314 222 37 0 0 chr4 95559036 95559063 -60071057 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1314 1958 205 18 13 chr4 95559100 95559495 -60070625 - Lx2B LINE L1 -6 6994 6598 7 1314 2451 165 110 25 chr4 95559495 95560012 -60070108 + Lx2B LINE L1 6030 6590 -410 7 1314 225 268 36 24 chr4 95560030 95560114 -60070006 - L1MC3 LINE L1 -4164 2587 2503 6 1314 403 223 28 28 chr4 95560137 95560243 -60069877 - PB1D10 SINE Alu -7 110 5 7 1314 209 231 0 19 chr4 95560387 95560440 -60069680 + T-rich Low_complexity Low_complexity 2 53 0 7 1314 1592 176 146 15 chr4 95560668 95561003 -60069117 - RLTR30 LTR ERV1 0 379 1 7 1314 368 306 43 47 chr4 95561089 95561306 -60068814 - L1MC3 LINE L1 -5196 849 629 6 1314 778 277 147 29 chr4 95561306 95561551 -60068569 + B4 SINE B4 1 274 -18 7 1314 315 0 0 0 chr4 95561553 95561588 -60068532 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1314 368 306 43 47 chr4 95561588 95561600 -60068520 - L1MC3 LINE L1 -5417 628 618 6 1314 1637 72 0 0 chr4 95561604 95561850 -60068270 + L1Md_F2 LINE L1 6376 6582 0 8 1314 435 274 52 29 chr4 95562005 95562178 -60067942 - L1MC3 LINE L1 -5630 415 239 6 1314 931 153 21 0 chr4 95562412 95562556 -60067564 - B1_Mus2 SINE Alu 0 147 1 8 1314 198 302 32 0 chr4 95562625 95562688 -60067432 + L2a LINE L2 3295 3359 -67 8 1314 238 319 19 90 chr4 95563918 95564120 -60066000 + MIRb SINE MIR 55 241 -27 8 1314 23 0 0 0 chr4 95565462 95565485 -60064635 + GC_rich Low_complexity Low_complexity 1 23 0 8 1314 333 0 0 0 chr4 95566630 95566667 -60063453 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1314 192 324 230 0 chr4 95566976 95567115 -60063005 - MIRb SINE MIR -77 191 21 8 1314 393 75 0 0 chr4 95569183 95569236 -60060884 + (TTA)n Simple_repeat Simple_repeat 2 54 0 8 1314 327 319 65 29 chr4 95569265 95569404 -60060716 + LTR33 LTR ERVL 235 378 -137 8 1314 928 207 0 0 chr4 95569475 95569625 -60060495 - RSINE1 SINE B4 -14 151 2 9 1314 1708 192 71 64 chr4 95569827 95570249 -60059871 + MTC-int LTR MaLR 306 730 -528 9 1314 3954 220 37 12 chr4 95570250 95571188 -60058932 + L1_Mur3 LINE L1 3162 4123 -1757 9 1314 548 297 5 49 chr4 95571190 95571374 -60058746 + Lx8 LINE L1 6805 6980 -493 9 1314 239 352 134 49 chr4 95571679 95571832 -60058288 - MIRm SINE MIR -49 159 1 9 1314 287 300 151 24 chr4 95572238 95572443 -60057677 - MIR SINE MIR -3 259 29 9 1314 229 342 129 7 chr4 95572649 95572796 -60057324 - L2c LINE L2 -82 3305 3141 9 1314 1696 328 50 19 chr4 95573310 95573945 -60056175 - Lx8 LINE L1 -180 7293 6639 9 1314 2820 286 101 46 chr4 95574822 95575966 -60054154 + Lx7 LINE L1 6115 7321 -375 9 1314 974 189 68 24 chr4 95575992 95576198 -60053922 - B3 SINE B2 0 216 2 9 1314 291 292 0 58 chr4 95576205 95576325 -60053795 + Lx7 LINE L1 7565 7677 -19 9 1314 343 293 61 0 chr4 95577046 95577145 -60052975 - MIR3 SINE MIR -22 186 82 1 1314 232 258 140 0 chr4 95577427 95577520 -60052600 + MIRc SINE MIR 95 200 -68 1 1314 285 320 77 10 chr4 95578150 95578254 -60051866 + MER21B LTR ERV1 45 155 -708 1 1314 342 307 152 10 chr4 95578324 95578528 -60051592 + MER21B LTR ERV1 304 536 -327 1 1314 245 288 229 36 chr4 95578571 95578737 -60051383 + MER21B LTR ERV1 615 812 -51 1 1314 261 259 17 0 chr4 95579200 95579258 -60050862 - MIRb SINE MIR -87 181 123 1 1314 234 274 16 0 chr4 95579544 95579606 -60050514 - L1ME2 LINE L1 -32 6132 6070 1 1314 333 102 0 0 chr4 95580063 95580122 -60049998 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 1 1314 441 0 0 0 chr4 95580122 95580171 -60049949 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1314 21 57 0 0 chr4 95580942 95580977 -60049143 + AT_rich Low_complexity Low_complexity 1 35 0 1 1314 372 275 0 0 chr4 95580994 95581074 -60049046 - PB1D10 SINE Alu -26 91 12 1 1314 605 361 24 24 chr4 95581188 95581480 -60048640 - B4A SINE B4 0 292 1 1 1314 228 143 0 0 chr4 95583456 95583498 -60046622 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 1 1314 309 301 36 64 chr4 95583498 95583608 -60046512 - PB1 SINE Alu -8 119 13 1 1314 246 246 72 0 chr4 95584478 95584547 -60045573 - LTR78 LTR ERV1 -1229 75 2 1 1314 346 333 47 21 chr4 95584563 95584753 -60045367 - L2c LINE L2 -1 3386 3192 1 1314 293 93 0 18 chr4 95585461 95585516 -60044604 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1314 294 29 0 0 chr4 95586679 95586714 -60043406 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1314 5442 212 141 20 chr4 95587091 95588180 -60041940 - Lx9 LINE L1 0 7644 6402 1 1314 261 0 0 0 chr4 95588180 95588209 -60041911 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1314 5442 212 141 20 chr4 95588209 95588636 -60041484 - Lx9 LINE L1 -1243 6401 5945 1 1314 31 0 0 0 chr4 95588745 95588776 -60041344 + AT_rich Low_complexity Low_complexity 1 31 0 1 1314 3918 136 20 33 chr4 95588786 95588889 -60041231 - Lx4A LINE L1 -3 7055 6953 1 1314 432 0 0 0 chr4 95588889 95588937 -60041183 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1314 3918 136 20 33 chr4 95588937 95589440 -60040680 - Lx4A LINE L1 -106 6952 6457 1 1314 648 217 42 7 chr4 95589441 95589585 -60040535 - Lx9 LINE L1 -1717 5927 5779 1 1314 819 170 200 11 chr4 95589782 95589972 -60040148 - URR1A DNA MER1_type 0 226 1 1 1314 195 42 0 0 chr4 95590250 95590274 -60039846 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1 1314 214 362 58 45 chr4 95590419 95590575 -60039545 - L2c LINE L2 -196 3191 3034 1 1314 28 0 0 0 chr4 95591295 95591323 -60038797 + AT_rich Low_complexity Low_complexity 1 28 0 1 1314 2326 65 24 0 chr4 95591325 95591615 -60038505 - L1_Mus1 LINE L1 -1 6566 6270 1 1314 293 319 92 7 chr4 95592274 95592416 -60037704 - MIR SINE MIR -3 259 106 1 1314 326 304 225 20 chr4 95593896 95594198 -60035922 + L1MC4 LINE L1 7155 7518 -524 1 1314 1494 262 40 59 chr4 95596557 95597031 -60033089 + RLTR28B LTR ERVL 17 481 0 1 1314 2288 199 78 28 chr4 95597104 95597667 -60032453 + MTC-int LTR MaLR 58 648 -610 1 1314 538 250 68 73 chr4 95597686 95597863 -60032257 + MTD LTR MaLR 244 419 0 1 1314 203 54 0 75 chr4 95598373 95598413 -60031707 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1314 561 99 0 0 chr4 95599689 95599770 -60030350 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1314 198 0 0 0 chr4 95600155 95600177 -60029943 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1314 184 293 24 0 chr4 95600785 95600826 -60029294 + L3 LINE CR1 1613 1654 -2835 1 1314 416 340 65 65 chr4 95602077 95602385 -60027735 + MLT1I LTR MaLR 101 408 -3 1 1314 182 294 167 19 chr4 95603105 95603261 -60026859 - MIR SINE MIR 0 262 84 1 1314 2103 168 68 3 chr4 95603323 95603676 -60026444 + ORR1C1 LTR MaLR 1 376 -2 1 1314 228 282 11 76 chr4 95604292 95604384 -60025736 - Cheshire DNA MER1_type -2123 297 212 1 1314 253 0 26 26 chr4 95604601 95604639 -60025481 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1314 213 327 135 0 chr4 95604756 95604860 -60025260 - MIR SINE MIR -122 140 23 1 1314 1505 296 92 45 chr4 95604961 95606102 -60024018 - L1MD3 LINE L1 -10 7985 6610 1 1314 588 53 0 0 chr4 95606107 95606183 -60023937 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 1 1314 286 241 52 103 chr4 95607683 95607780 -60022340 + MTEb LTR MaLR 1 92 -287 1 1314 843 86 0 0 chr4 95608097 95608214 -60021906 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 1 1314 339 223 21 0 chr4 95608214 95608308 -60021812 + RMER17A LTR ERVK 361 456 -295 1 1314 1506 277 47 15 chr4 95608587 95609053 -60021067 + RMER20A LTR ERVK 36 516 0 1 1314 424 269 54 0 chr4 95609082 95609175 -60020945 + PB1D10 SINE Alu 1 98 -19 1 1314 444 37 0 0 chr4 95609175 95609229 -60020891 + (CTTA)n Simple_repeat Simple_repeat 1 54 0 1 1314 298 265 61 59 chr4 95609238 95609455 -60020665 + L1M2 LINE L1 1862 2067 -5101 1 1314 604 272 54 0 chr4 95609467 95609614 -60020506 + RMER20B LTR ERVK 92 246 -381 1 1314 290 259 59 0 chr4 95609601 95609686 -60020434 + B4A SINE B4 203 292 0 1 1314 253 218 0 18 chr4 95609689 95609745 -60020375 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1314 419 231 222 14 chr4 95609749 95610113 -60020007 + L1M2 LINE L1 3890 4329 -2835 1 1314 1353 242 93 16 chr4 95610129 95610507 -60019613 + MTD LTR MaLR 13 419 0 1 1314 316 230 29 39 chr4 95610583 95610687 -60019433 + L1M2 LINE L1 4439 4541 -2623 1 1314 312 239 30 26 chr4 95610790 95610927 -60019193 + RLTR28 LTR ERVL 302 510 -14 1 1314 624 204 39 53 chr4 95610979 95611186 -60018934 + L1M2 LINE L1 4748 4951 -2213 1 1314 279 305 19 120 chr4 95611684 95611729 -60018391 - B1F1 SINE Alu -51 98 53 1 1314 3951 159 25 19 chr4 95611729 95612419 -60017701 + Lx2B LINE L1 6299 6992 -8 1 1314 279 305 19 120 chr4 95612419 95612481 -60017639 - B1F1 SINE Alu -97 52 2 1 1314 690 272 65 52 chr4 95613163 95613392 -60016728 + MTEb LTR MaLR 148 379 0 1 1314 627 98 0 0 chr4 95613467 95613559 -60016561 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1314 593 283 112 8 chr4 95615209 95615458 -60014662 + L1MA4A LINE L1 5666 5940 -363 1 1314 246 62 0 0 chr4 95615552 95615584 -60014536 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1314 312 27 0 0 chr4 95615592 95615629 -60014491 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1314 504 0 0 0 chr4 95615629 95615684 -60014436 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1314 1900 214 82 2 chr4 95615982 95616394 -60013726 + MT2A LTR ERVL 1 445 -88 1 1314 263 169 14 0 chr4 95616426 95616497 -60013623 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 1314 596 257 194 50 chr4 95616503 95616978 -60013142 - L1MB5 LINE L1 -148 6026 5484 1 1314 1094 51 0 0 chr4 95617088 95617225 -60012895 + B1_Mm SINE Alu 1 137 -10 1 1314 216 0 0 0 chr4 95617225 95617249 -60012871 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1314 304 350 0 16 chr4 95617812 95617934 -60012186 - IAP-d-int LTR ERVK -36 6506 6387 1 1314 423 331 12 0 chr4 95618132 95618295 -60011825 - RMER16-int LTR ERVK -374 5032 4868 1 1314 236 213 71 29 chr4 95618581 95618721 -60011399 + (CTCA)n Simple_repeat Simple_repeat 2 147 0 1 1314 1256 92 5 15 chr4 95618737 95618935 -60011185 - BGLII LTR ERVK -19 402 207 1 1314 672 36 0 0 chr4 95618916 95618999 -60011121 - BGLII LTR ERVK -338 83 1 1 1314 252 0 0 0 chr4 95619906 95619934 -60010186 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1314 1847 256 54 28 chr4 95619984 95620627 -60009493 - RMER16-int LTR ERVK -767 4639 3980 1 1314 1720 154 142 29 chr4 95620855 95621276 -60008844 - RMER16-int LTR ERVK -1416 3990 3522 1 1314 206 230 53 24 chr4 95621341 95621510 -60008610 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1314 614 194 23 31 chr4 95621987 95622115 -60008005 - B3 SINE B2 -69 147 21 1 1314 1059 258 29 50 chr4 95622115 95622495 -60007625 - L1M4c LINE L1 -982 5400 5029 1 1314 1308 203 139 6 chr4 95622707 95623039 -60007081 + RLTR1 LTR ERV1 249 624 0 1 1314 272 312 85 14 chr4 95623074 95623285 -60006835 - L1M4c LINE L1 -1408 4974 4749 1 1314 329 289 119 12 chr4 95623336 95623504 -60006616 - L1M2 LINE L1 -1693 4450 4265 1 1314 341 303 85 14 chr4 95623757 95624154 -60005966 - L1M4c LINE L1 -3816 2566 2142 1 1314 279 0 0 0 chr4 95624423 95624454 -60005666 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1 1314 488 148 111 0 chr4 95624454 95624535 -60005585 - B1_Mur1 SINE Alu -15 134 45 1 1314 321 284 44 22 chr4 95624463 95624553 -60005567 - MT2B2 LTR ERVL -313 271 180 1 1314 649 206 73 0 chr4 95624685 95624821 -60005299 + B1_Mur4 SINE Alu 5 150 0 1 1314 314 291 95 24 chr4 95625377 95625546 -60004574 - L1M4c LINE L1 -4230 2154 1974 1 1314 622 221 221 0 chr4 95625820 95625992 -60004128 + B3 SINE B2 1 210 -6 1 1314 207 275 100 0 chr4 95626041 95626121 -60003999 + L3 LINE CR1 2782 2869 -1620 1 1314 233 285 36 14 chr4 95626175 95626267 -60003853 - MIRm SINE MIR -98 164 81 1 1314 435 256 120 32 chr4 95626661 95626786 -60003334 + RSINE1 SINE B4 2 137 -28 1 1314 340 280 137 54 chr4 95627165 95627764 -60002356 + L1MC4 LINE L1 6736 7425 -617 1 1314 304 352 72 41 chr4 95627795 95628115 -60002005 + L1MC4 LINE L1 7508 7837 -205 1 1314 267 31 0 0 chr4 95628169 95628201 -60001919 + (TAG)n Simple_repeat Simple_repeat 3 34 0 1 1314 274 211 0 19 chr4 95628379 95628432 -60001688 + MT2B LTR ERVL 183 234 -367 1 1314 405 0 0 0 chr4 95629053 95629098 -60001022 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1314 31 0 0 0 chr4 95629371 95629402 -60000718 + AT_rich Low_complexity Low_complexity 1 31 0 1 1314 292 191 11 11 chr4 95631369 95631459 -59998661 + CT-rich Low_complexity Low_complexity 1 90 0 1 1314 22 56 0 0 chr4 95631970 95632006 -59998114 + AT_rich Low_complexity Low_complexity 1 36 0 1 1314 33 25 0 0 chr4 95632038 95632078 -59998042 + AT_rich Low_complexity Low_complexity 1 40 0 1 1314 851 217 32 5 chr4 95632358 95632548 -59997572 + B3A SINE B2 1 195 -3 1 1314 426 101 0 0 chr4 95635411 95635480 -59994640 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1314 9447 196 102 57 chr4 95636280 95639346 -59990774 - Lx LINE L1 -18 6636 3483 1 1314 629 188 144 23 chr4 95639345 95639519 -59990601 - MusHAL1 LINE L1 -665 2047 1853 1 1314 481 236 0 11 chr4 95639536 95639712 -59990408 + CT-rich Low_complexity Low_complexity 2 175 0 1 1314 1266 111 31 2 chr4 95639715 95639910 -59990210 - Lx2 LINE L1 -513 6484 6298 1 1314 869 69 0 0 chr4 95639904 95640020 -59990100 + Lx2 LINE L1 6194 6309 -688 1 1314 645 264 86 0 chr4 95640390 95640530 -59989590 - RSINE1 SINE B4 -10 155 4 1 1314 26 30 0 0 chr4 95641967 95642000 -59988120 + AT_rich Low_complexity Low_complexity 1 33 0 2 1314 22 35 0 0 chr4 95642200 95642229 -59987891 + AT_rich Low_complexity Low_complexity 1 29 0 2 1314 6104 64 5 0 chr4 95642229 95643010 -59987110 - L1_Mus1 LINE L1 0 6567 5783 2 1314 37087 73 21 13 chr4 95643025 95649279 -59980841 - L1Md_F3 LINE L1 -14 6573 268 2 1314 6078 107 5 0 chr4 95649279 95650141 -59979979 - L1_Mm LINE L1 -86 5797 4932 2 1314 560 262 61 15 chr4 95651018 95651216 -59978904 - MLT1C LTR MaLR 0 467 261 2 1314 287 276 148 66 chr4 95651232 95651414 -59978706 - MLT1C LTR MaLR -259 208 12 2 1314 907 282 74 67 chr4 95651688 95651973 -59978147 - B4A SINE B4 0 292 6 2 1314 184 377 105 46 chr4 95651986 95652139 -59977981 - MIR SINE MIR -91 171 10 2 1314 1249 41 0 0 chr4 95652540 95652687 -59977433 + B1_Mus2 SINE Alu 1 147 0 2 1314 3113 37 37 3 chr4 95652898 95653281 -59976839 - MTA_Mm LTR MaLR 0 396 1 2 1314 430 121 0 0 chr4 95653281 95653347 -59976773 - MTA_Mm-int LTR MaLR 0 1098 1033 2 1314 7928 45 16 2 chr4 95653347 95654722 -59975398 - L1Md_F2 LINE L1 -2 6580 5185 2 1314 6943 59 60 34 chr4 95654722 95655741 -59974379 - MTA_Mm-int LTR MaLR -53 1045 1 2 1314 22 35 0 0 chr4 95656264 95656293 -59973827 + AT_rich Low_complexity Low_complexity 1 29 0 2 1314 1001 234 134 24 chr4 95656529 95656858 -59973262 + MTD LTR MaLR 24 388 -31 2 1314 364 228 190 0 chr4 95656909 95657067 -59973053 - L1M5 LINE L1 -403 5776 5589 2 1314 315 167 0 0 chr4 95657208 95657274 -59972846 + (CATA)n Simple_repeat Simple_repeat 2 67 0 2 1314 806 263 44 5 chr4 95657281 95657487 -59972633 - B3 SINE B2 -1 215 2 2 1314 314 296 52 65 chr4 95657781 95657936 -59972184 - RSINE1 SINE B4 -2 163 11 2 1314 23 0 0 0 chr4 95658966 95658989 -59971131 + AT_rich Low_complexity Low_complexity 1 23 0 2 1314 1212 130 16 0 chr4 95661838 95662023 -59968097 - B2_Mm2 SINE B2 -5 190 3 2 1314 39 38 0 0 chr4 95662420 95662473 -59967647 + AT_rich Low_complexity Low_complexity 1 53 0 2 1314 305 284 86 0 chr4 95662679 95662760 -59967360 - BC1_Mm scRNA scRNA -64 88 1 2 1314 210 147 0 0 chr4 95663837 95663871 -59966249 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1314 5433 158 25 12 chr4 95664095 95665061 -59965059 - Lx4B LINE L1 -4 7054 6077 2 1314 183 133 0 91 chr4 95666122 95666188 -59963932 + (TATG)n Simple_repeat Simple_repeat 2 61 0 2 1314 367 205 167 18 chr4 95667107 95667221 -59962899 - MER57F LTR ERV1 0 436 306 2 1314 240 293 129 25 chr4 95667249 95667384 -59962736 + RSINE1 SINE B4 1 150 -15 2 1314 489 154 27 0 chr4 95667409 95667519 -59962601 + (TA)n Simple_repeat Simple_repeat 2 114 0 2 1314 318 259 244 0 chr4 95668687 95668818 -59961302 - L1MC4 LINE L1 -1020 7022 6860 2 1314 22 0 0 0 chr4 95669010 95669032 -59961088 + AT_rich Low_complexity Low_complexity 1 22 0 2 1314 407 275 36 27 chr4 95669620 95669732 -59960388 - RSINE1 SINE B4 -47 118 6 2 1314 63 36 0 0 chr4 95670715 95670799 -59959321 + AT_rich Low_complexity Low_complexity 1 84 0 2 1314 183 42 0 0 chr4 95671133 95671157 -59958963 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1314 1246 88 11 32 chr4 95671320 95671508 -59958612 - B2_Mm1t SINE B2 -8 185 2 2 1314 515 271 77 39 chr4 95671513 95671851 -59958269 - L1M2 LINE L1 -1254 4889 4539 2 1314 472 257 111 12 chr4 95671874 95672126 -59957994 + L1M2 LINE L1 4250 4526 -1617 2 1314 876 290 134 69 chr4 95672962 95673632 -59956488 - RLTR22_Mur LTR ERVK -43 1765 730 2 1314 216 0 0 0 chr4 95673638 95673662 -59956458 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1314 1705 251 45 77 chr4 95673818 95674607 -59955513 - RLTR22_Mur LTR ERVK -1098 750 1 2 1314 234 327 64 0 chr4 95674622 95674778 -59955342 - L1M4 LINE L1 -368 5810 5645 2 1314 294 252 89 81 chr4 95674811 95675070 -59955050 - L1M4 LINE L1 -665 5519 5259 2 1314 2164 169 60 64 chr4 95675081 95675549 -59954571 + RMER4A LTR ERVK 1 466 0 2 1314 1273 126 134 0 chr4 95675557 95675795 -59954325 - RMER6C LTR ERVK 0 690 421 2 1314 384 158 0 0 chr4 95675858 95675934 -59954186 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1314 338 302 70 95 chr4 95676701 95676953 -59953167 - L1MB8 LINE L1 -13 6171 5895 2 1314 33 56 0 0 chr4 95677499 95677553 -59952567 + AT_rich Low_complexity Low_complexity 1 54 0 2 1314 687 271 133 19 chr4 95677643 95678038 -59952082 - Lx9 LINE L1 -180 7464 6894 2 1314 266 269 46 139 chr4 95678045 95678155 -59951965 + MT2B2 LTR ERVL 66 157 -427 2 1314 590 237 0 41 chr4 95678155 95678278 -59951842 + PB1D9 SINE Alu 3 120 0 2 1314 945 268 161 3 chr4 95678329 95678677 -59951443 - Lx9 LINE L1 -833 6811 6409 2 1314 267 31 0 0 chr4 95678684 95678716 -59951404 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1314 364 280 147 8 chr4 95678903 95679148 -59950972 - Lx9 LINE L1 -1589 6055 5777 2 1314 401 179 53 2 chr4 95679205 95679303 -59950817 + Lx8 LINE L1 5646 5787 -1686 2 1314 27 0 0 0 chr4 95679365 95679392 -59950728 + AT_rich Low_complexity Low_complexity 1 27 0 2 1314 395 298 112 14 chr4 95679632 95679775 -59950345 + RSINE1 SINE B4 7 163 -2 2 1314 213 39 0 0 chr4 95680845 95680871 -59949249 + (CAAG)n Simple_repeat Simple_repeat 1 26 0 2 1315 329 333 106 27 chr4 95683441 95683629 -59946491 - MIRb SINE MIR -48 220 18 2 1315 277 327 234 34 chr4 95685408 95685759 -59944361 - MLT1J1 LTR MaLR -2 442 22 2 1315 709 268 6 12 chr4 95685722 95685902 -59944218 + B3 SINE B2 13 188 -28 2 1315 275 299 58 25 chr4 95685902 95686022 -59944098 - L2 LINE L2 -487 2932 2809 2 1315 21 57 0 0 chr4 95687109 95687144 -59942976 + AT_rich Low_complexity Low_complexity 1 35 0 2 1315 213 151 88 70 chr4 95689129 95689186 -59940934 - PB1D9 SINE Alu 0 120 63 2 1315 453 312 16 66 chr4 95689141 95689323 -59940797 - ID_B1 SINE B4 -9 215 43 2 1315 207 261 103 44 chr4 95689901 95689969 -59940151 + L3 LINE CR1 3949 4020 -469 2 1315 1105 49 21 7 chr4 95692247 95692392 -59937728 + B1_Mus1 SINE Alu 2 148 0 2 1315 283 253 33 33 chr4 95693235 95693325 -59936795 + RMER5 LTR ERV1 24 113 -421 2 1315 425 228 139 13 chr4 95693381 95693532 -59936588 + RMER5 LTR ERV1 218 387 -147 2 1315 310 258 187 26 chr4 95693614 95693769 -59936351 - L1M4b LINE L1 -5511 1823 1644 2 1315 922 207 95 42 chr4 95694118 95694455 -59935665 - Lx9 LINE L1 -64 7580 7226 2 1315 217 330 97 18 chr4 95696142 95696256 -59933864 + L2c LINE L2 3256 3378 -9 2 1315 386 34 169 0 chr4 95696366 95696425 -59933695 - L1_Mm LINE L1 -1668 4215 4147 2 1315 539 32 20 51 chr4 95696425 95696523 -59933597 + L1Md_F3 LINE L1 6490 6584 0 2 1315 257 286 92 0 chr4 95696683 95696781 -59933339 + MER31A LTR ERV1 209 315 -170 2 1315 212 0 36 0 chr4 95696969 95696997 -59933123 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 1315 546 188 58 36 chr4 95697014 95697152 -59932968 - Lx5 LINE L1 -640 6410 6270 2 1315 462 216 35 35 chr4 95697126 95697270 -59932850 + Lx5 LINE L1 6832 6975 -75 2 1315 3858 146 37 8 chr4 95698188 95698856 -59931264 + Lx LINE L1 5967 6654 0 2 1315 389 247 0 0 chr4 95698928 95699017 -59931103 - MTD LTR MaLR -330 89 1 2 1315 241 299 38 81 chr4 95700913 95701124 -59928996 - L1MC4a LINE L1 -1045 6837 6636 2 1315 313 333 52 35 chr4 95701485 95701659 -59928461 + MLT1H LTR MaLR 34 210 -339 2 1315 3566 115 29 21 chr4 95701662 95702294 -59927826 - L1_Mur2 LINE L1 -1226 4651 4015 2 1315 2627 152 69 48 chr4 95702291 95702830 -59927290 + Lx4A LINE L1 6506 7055 -3 2 1315 28 29 0 0 chr4 95702831 95702866 -59927254 + AT_rich Low_complexity Low_complexity 1 35 0 2 1315 615 218 62 34 chr4 95703227 95703403 -59926717 - B2_Mm2 SINE B2 -14 181 1 2 1315 2050 121 12 67 chr4 95705865 95706211 -59923909 - ORR1A4 LTR MaLR 0 329 3 2 1315 1284 176 266 0 chr4 95706684 95706974 -59923146 + ORR1B2 LTR MaLR 1 367 0 2 1315 330 313 82 111 chr4 95707234 95707478 -59922642 + MTEa LTR MaLR 19 255 -124 2 1315 2508 37 75 0 chr4 95708324 95708646 -59921474 + ORR1A1 LTR MaLR 1 346 0 2 1315 469 283 157 17 chr4 95708732 95709088 -59921032 - L1MB2 LINE L1 -55 6116 5711 2 1315 521 316 15 0 chr4 95709138 95709274 -59920846 + RSINE1 SINE B4 9 146 -19 2 1315 423 0 0 0 chr4 95709285 95709332 -59920788 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1315 1643 210 43 0 chr4 95709365 95709689 -59920431 + MTC LTR MaLR 1 338 -83 2 1315 1416 239 38 43 chr4 95709713 95710058 -59920062 - ORR1C2 LTR MaLR 0 384 42 2 1315 5288 105 20 15 chr4 95710151 95710955 -59919165 + RLTR13C2 LTR ERVK 1 808 0 2 1315 381 245 142 0 chr4 95711086 95711192 -59918928 + RMER15 LTR ERVL 422 542 -33 2 1315 334 222 27 14 chr4 95711644 95711717 -59918403 + ORR1B2 LTR MaLR 64 137 -230 2 1315 216 0 0 0 chr4 95712636 95712660 -59917460 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1315 690 311 11 20 chr4 95712673 95712876 -59917244 + B3A SINE B2 7 210 -6 2 1315 976 220 12 0 chr4 95714145 95714318 -59915802 - B3 SINE B2 -41 175 1 2 1315 2886 95 0 7 chr4 95714950 95715353 -59914767 - L1Md_F2 LINE L1 -3 6579 6180 2 1315 2105 82 38 65 chr4 95715429 95715770 -59914350 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 1315 53521 14 17 4 chr4 95715782 95722146 -59907974 + IAPEz-int LTR ERVK 35 6481 0 2 1315 2112 78 38 65 chr4 95722146 95722487 -59907633 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 1315 303 242 40 0 chr4 95724423 95724522 -59905598 - L1MB2 LINE L1 -43 6128 6026 2 1315 361 189 11 11 chr4 95725074 95725165 -59904955 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1315 465 262 63 32 chr4 95725192 95725318 -59904802 + B4 SINE B4 22 151 -141 2 1315 22 0 0 0 chr4 95725839 95725861 -59904259 + AT_rich Low_complexity Low_complexity 1 22 0 2 1315 4237 28 4 2 chr4 95725873 95726371 -59903749 - L1Md_F3 LINE L1 0 6584 6086 3 1315 543 40 0 0 chr4 95726371 95726446 -59903674 + L1_Mm LINE L1 3284 3358 -2525 3 1315 360 0 0 0 chr4 95726761 95726801 -59903319 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1315 2085 57 35 28 chr4 95727103 95727390 -59902730 + L1_Mus1 LINE L1 6279 6567 0 3 1315 303 28 0 0 chr4 95727450 95727486 -59902634 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1315 425 304 79 104 chr4 95727594 95727950 -59902170 + ORR1E LTR MaLR 13 359 0 3 1315 26 0 0 0 chr4 95729951 95729977 -59900143 + AT_rich Low_complexity Low_complexity 1 26 0 3 1315 5777 120 76 9 chr4 95730010 95730943 -59899177 + Lx2 LINE L1 6001 6996 -1 3 1315 204 125 0 0 chr4 95730986 95731018 -59899102 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1315 287 333 0 0 chr4 95731235 95731349 -59898771 + L1_Rod LINE L1 1553 1666 -4181 3 1315 217 271 0 125 chr4 95731402 95731482 -59898638 + B4A SINE B4 5 74 -218 3 1315 362 321 65 48 chr4 95731862 95732379 -59897741 + L1M2 LINE L1 2360 2904 -3239 3 1315 324 67 0 0 chr4 95732379 95732386 -59897734 + (GA)n Simple_repeat Simple_repeat 1 7 0 3 1315 1236 106 0 22 chr4 95732386 95732569 -59897551 + B2_Mm2 SINE B2 1 179 -16 3 1315 324 67 0 0 chr4 95732569 95732606 -59897514 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1315 242 300 11 0 chr4 95732622 95732712 -59897408 + L1_Rod LINE L1 2910 3000 -2847 3 1315 1238 70 0 12 chr4 95732846 95733019 -59897101 - L1Md_F2 LINE L1 -12 6570 6400 3 1315 6595 43 13 0 chr4 95733019 95734372 -59895748 + L1Md_F2 LINE L1 5025 6390 -192 3 1315 260 291 53 72 chr4 95735228 95735380 -59894740 + L2a LINE L2 3277 3425 -1 3 1315 460 232 25 8 chr4 95736010 95736129 -59893991 + RLTR33 LTR ERVK 175 334 -344 3 1315 1059 210 3 126 chr4 95736145 95736370 -59893750 - MT2A LTR ERVL -273 260 70 3 1315 1091 112 0 6 chr4 95736370 95736541 -59893579 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 3 1315 1059 210 3 126 chr4 95736541 95736609 -59893511 - MT2A LTR ERVL -464 69 3 3 1315 2009 207 40 0 chr4 95737263 95737668 -59892452 + MTC LTR MaLR 1 421 0 3 1315 777 76 0 0 chr4 95738822 95738927 -59891193 + (TTTC)n Simple_repeat Simple_repeat 4 108 0 3 1315 347 113 16 0 chr4 95738934 95738996 -59891124 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 3 1315 5149 2 0 0 chr4 95739437 95740003 -59890117 - L1Md_A LINE L1 0 6582 6017 3 1315 483 18 0 0 chr4 95740102 95740158 -59889962 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1315 485 301 9 0 chr4 95740163 95740276 -59889844 - RSINE1 SINE B4 -48 117 4 3 1315 2911 41 3 0 chr4 95740744 95741089 -59889031 - ORR1A1 LTR MaLR 0 346 1 3 1315 1054 37 104 0 chr4 95741610 95741744 -59888376 - B1_Mus1 SINE Alu 0 148 1 3 1315 2689 164 47 58 chr4 95743032 95743348 -59886772 - Lx4B LINE L1 -7 7051 6757 3 1315 794 20 10 0 chr4 95743348 95743448 -59886672 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1315 2689 164 47 58 chr4 95743448 95743789 -59886331 - Lx4B LINE L1 -302 6756 6401 3 1315 206 269 0 0 chr4 95744492 95744544 -59885576 + C-rich Low_complexity Low_complexity 1 52 0 3 1315 35311 52 7 8 chr4 95746204 95752433 -59877687 - L1Md_F2 LINE L1 0 6582 441 3 1315 1166 280 118 9 chr4 95752739 95753164 -59876956 - RMER5 LTR ERV1 -31 503 33 3 1315 351 0 0 0 chr4 95753452 95753491 -59876629 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1315 282 233 203 31 chr4 95753662 95753825 -59876295 + L1_Mur3 LINE L1 4367 4552 -1588 3 1315 315 0 0 0 chr4 95753856 95753891 -59876229 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1315 334 311 118 1 chr4 95753900 95754088 -59876032 + L1_Mur3 LINE L1 4615 4853 -1290 3 1315 6704 120 23 18 chr4 95754215 95754358 -59875762 + Lx LINE L1 5512 5653 -230 3 1315 2105 144 10 0 chr4 95754358 95754664 -59875456 + RLTR27 LTR ERVK 1 309 0 3 1315 6704 97 33 13 chr4 95754664 95755643 -59874477 + Lx LINE L1 5654 6654 0 3 1315 2355 232 74 55 chr4 95755880 95756867 -59873253 + RLTR13D6 LTR ERVK 1 983 0 3 1315 463 289 64 36 chr4 95757025 95757341 -59872779 + L1_Mur3 LINE L1 5163 5497 -2288 3 1315 349 337 0 44 chr4 95757850 95758055 -59872065 + L1_Mur3 LINE L1 5522 5717 -574 3 1315 251 280 142 17 chr4 95758075 95758195 -59871925 - RMER15 LTR ERVL -19 556 422 3 1315 404 313 19 32 chr4 95758214 95758369 -59871751 + RMER5 LTR ERV1 31 183 -351 3 1315 1854 94 14 4 chr4 95759080 95759356 -59870764 + L1_Mus3 LINE L1 6359 6637 -1 3 1315 25 0 0 0 chr4 95760965 95760990 -59869130 + AT_rich Low_complexity Low_complexity 1 25 0 3 1315 2417 72 74 11 chr4 95761050 95761400 -59868720 + L1_Mus4 LINE L1 6259 6630 -6 3 1315 883 221 16 78 chr4 95761768 95762023 -59868097 + RMER5 LTR ERV1 1 239 -295 3 1315 247 351 44 60 chr4 95762023 95762205 -59867915 - RLTR25A LTR ERVK 0 1028 850 3 1315 7070 83 33 1 chr4 95762256 95763301 -59866819 - L1_Mus3 LINE L1 -4 6634 5586 3 1315 226 261 21 52 chr4 95763295 95763392 -59866728 - L1Md_F LINE L1 -5855 664 571 3 1315 27 49 0 0 chr4 95763575 95763616 -59866504 + AT_rich Low_complexity Low_complexity 1 41 0 3 1315 4175 92 0 7 chr4 95763936 95764504 -59865616 - Lx3_Mus LINE L1 0 7009 6446 3 1315 606 66 0 0 chr4 95764504 95764580 -59865540 + Lx3_Mus LINE L1 6352 6427 -582 3 1315 396 338 26 77 chr4 95765040 95765274 -59864846 - RLTR25A LTR ERVK -881 222 1 3 1315 1028 173 194 16 chr4 95765274 95765381 -59864739 + RMER5 LTR ERV1 235 371 -163 3 1315 189 0 0 0 chr4 95765381 95765402 -59864718 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1315 1028 173 194 16 chr4 95765402 95765540 -59864580 + RMER5 LTR ERV1 372 525 -9 3 1315 21 0 0 0 chr4 95766775 95766796 -59863324 + AT_rich Low_complexity Low_complexity 1 21 0 3 1315 192 40 0 0 chr4 95766995 95767020 -59863100 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 1315 200 270 66 26 chr4 95770837 95770913 -59859207 + L3 LINE CR1 4319 4397 -92 3 1315 3455 25 2 0 chr4 95770916 95771311 -59858809 + MTA_Mm LTR MaLR 1 396 0 3 1315 9033 32 7 2 chr4 95771311 95772403 -59857717 + MTA_Mm-int LTR MaLR 1 1098 0 3 1315 3465 23 2 0 chr4 95772403 95772798 -59857322 + MTA_Mm LTR MaLR 1 396 0 3 1315 4962 52 0 10 chr4 95773370 95773989 -59856131 - L1_Mus1 LINE L1 0 6567 5955 3 1315 1073 54 0 0 chr4 95773989 95774136 -59855984 + L1_Mus1 LINE L1 5906 6052 -515 3 1315 227 266 91 50 chr4 95774289 95774388 -59855732 - MER66A LTR ERV1 -168 310 208 3 1315 23 0 0 0 chr4 95774528 95774551 -59855569 + AT_rich Low_complexity Low_complexity 1 23 0 3 1315 469 366 6 0 chr4 95774559 95774720 -59855400 - RSINE1 SINE B4 0 165 4 3 1315 308 356 36 13 chr4 95775448 95775584 -59854536 - PB1D10 SINE Alu -15 134 3 3 1315 353 318 71 21 chr4 95775712 95775995 -59854125 - L1MB3 LINE L1 -207 5976 5680 3 1315 808 283 142 29 chr4 95776131 95776447 -59853673 + ORR1D2 LTR MaLR 8 359 0 3 1315 3426 280 82 49 chr4 95776449 95777762 -59852358 + ORR1D2-int LTR MaLR 1 1356 -14 3 1315 989 266 113 42 chr4 95777785 95778122 -59851998 + ORR1D2 LTR MaLR 10 370 0 3 1315 901 286 27 46 chr4 95778175 95778435 -59851685 + B4 SINE B4 3 257 -35 3 1315 230 211 121 84 chr4 95779300 95779383 -59850737 + MT2A LTR ERVL 63 148 -385 3 1315 423 258 29 16 chr4 95779367 95779496 -59850624 + MT2A LTR ERVL 94 189 -344 3 1315 198 0 0 0 chr4 95779718 95779740 -59850380 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1315 959 293 31 47 chr4 95780109 95780527 -59849593 + MT2B LTR ERVL 63 601 0 3 1315 453 358 63 51 chr4 95781008 95781358 -59848762 + ORR1E LTR MaLR 1 354 -5 3 1315 462 339 148 31 chr4 95781765 95782082 -59848038 + MLT1D LTR MaLR 23 376 -129 3 1315 29 28 0 0 chr4 95783332 95783368 -59846752 + AT_rich Low_complexity Low_complexity 1 36 0 3 1315 22 35 0 0 chr4 95783854 95783883 -59846237 + AT_rich Low_complexity Low_complexity 1 29 0 3 1315 1888 140 176 3 chr4 95783883 95784263 -59845857 - Lx4A LINE L1 -1 7057 6612 3 1315 1423 273 27 25 chr4 95784602 95785045 -59845075 + MYSERV-int LTR ERVK 4683 5126 -1424 3 1315 440 263 31 65 chr4 95785045 95785248 -59844872 + RMER4A LTR ERVK 251 557 -28 3 1315 594 136 102 45 chr4 95785248 95785425 -59844695 + MYSERV-int LTR ERVK 5320 5506 -1044 3 1315 4002 183 43 64 chr4 95785451 95786497 -59843623 + MYSERV6-int LTR ERVK 7935 8958 -1 3 1315 628 285 55 65 chr4 95786507 95786839 -59843281 + RLTR12B LTR ERVK 9 328 -240 3 1315 704 240 70 8 chr4 95786986 95787242 -59842878 + Lx9 LINE L1 7351 7622 -22 3 1315 34 0 0 0 chr4 95787242 95787276 -59842844 + AT_rich Low_complexity Low_complexity 1 34 0 3 1315 1247 81 13 3 chr4 95787617 95787789 -59842331 - B2_Mm1t SINE B2 -8 208 21 3 1315 1099 117 33 16 chr4 95787820 95788002 -59842118 - B2_Mm2 SINE B2 -9 186 2 3 1315 977 184 14 4 chr4 95788342 95788614 -59841506 + CT-rich Low_complexity Low_complexity 1 274 0 3 1315 1161 84 6 16 chr4 95788614 95788796 -59841324 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1315 329 245 43 0 chr4 95788796 95788847 -59841273 + polypyrimidine Low_complexity Low_complexity 2 53 0 3 1315 190 362 53 11 chr4 95789031 95789126 -59840994 + L2b LINE L2 3228 3326 -49 3 1315 3940 166 30 25 chr4 95789817 95791433 -59838687 + L1VL2 LINE L1 9 1519 -2096 3 1315 737 233 18 36 chr4 95791433 95791598 -59838522 - RLTR17 LTR ERVK 0 692 531 3 1315 6672 192 47 51 chr4 95791653 95793489 -59836631 + RMER3D-int LTR ERVK 1015 2842 0 3 1315 3629 189 22 12 chr4 95793489 95794174 -59835946 + RLTR17 LTR ERVK 1 692 0 3 1315 11053 176 12 5 chr4 95794174 95796462 -59833658 + Lx LINE L1 1813 4116 -1770 3 1315 3259 103 2 1 chr4 95796466 95797113 -59833007 + Lx LINE L1 5337 5983 -671 3 1315 431 171 38 9 chr4 95797113 95797219 -59832901 + Lx LINE L1 6546 6654 0 3 1315 4244 76 2 2 chr4 95797274 95797830 -59832290 - L1_Mus2 LINE L1 0 6566 6011 3 1315 2450 63 60 0 chr4 95797830 95798180 -59831940 + L1_Mus2 LINE L1 5611 5981 -585 3 1315 315 85 0 0 chr4 95798241 95798288 -59831832 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1315 210 71 0 0 chr4 95800134 95800162 -59829958 + (TTC)n Simple_repeat Simple_repeat 2 29 0 3 1315 1085 82 0 33 chr4 95800163 95800314 -59829806 - B1_Mus2 SINE Alu 0 147 2 3 1315 3533 116 23 21 chr4 95801949 95802506 -59827614 + Lx LINE L1 6092 6649 -5 3 1315 906 241 45 0 chr4 95802925 95803124 -59826996 + B3 SINE B2 2 209 -7 3 1315 687 246 14 22 chr4 95803719 95803874 -59826246 + B3A SINE B2 2 151 -44 3 1315 321 125 0 0 chr4 95803874 95803930 -59826190 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1315 437 263 46 87 chr4 95803930 95803970 -59826150 + B2_Mm2 SINE B2 152 188 -7 3 1315 454 335 162 36 chr4 95805558 95806683 -59823437 + L1MDa LINE L1 1278 2543 -4090 3 1315 300 27 0 0 chr4 95806854 95806891 -59823229 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1315 308 148 16 0 chr4 95806892 95806953 -59823167 + GA-rich Low_complexity Low_complexity 2 63 0 3 1315 349 319 106 5 chr4 95806953 95807142 -59822978 + L1MDa LINE L1 2890 3097 -3440 3 1315 278 236 79 31 chr4 95807207 95807334 -59822786 + L1MDa LINE L1 3101 3233 -3304 3 1315 195 42 0 0 chr4 95808320 95808344 -59821776 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 3 1315 396 0 0 0 chr4 95808545 95808589 -59821531 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1315 216 97 0 0 chr4 95808922 95808953 -59821167 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 4 1315 510 248 24 0 chr4 95808959 95809084 -59821036 - B1_Mur2 SINE Alu -21 128 1 4 1315 228 153 67 45 chr4 95809446 95809535 -59820585 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 4 1315 250 156 0 0 chr4 95809680 95809725 -59820395 + L1_Mur3 LINE L1 5164 5208 -672 4 1315 248 250 107 0 chr4 95809976 95810060 -59820060 - Lx5 LINE L1 -407 6643 6551 4 1315 3481 159 63 8 chr4 95810061 95810712 -59819408 + Lx4A LINE L1 6372 7058 0 4 1315 19282 180 31 45 chr4 95810713 95813230 -59816890 - Lx5 LINE L1 -598 6452 3857 4 1315 234 0 0 0 chr4 95813230 95813256 -59816864 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1315 1044 16 0 0 chr4 95813261 95813384 -59816736 - B1_Mm SINE Alu -5 142 20 4 1315 227 262 42 97 chr4 95813384 95813423 -59816697 + YREP_Mm Unknown Unknown 183 335 -1477 4 164 19282 178 39 56 chr4 95813423 95815201 -59814919 - Lx5 LINE L1 -2021 3854 2053 4 1316 387 41 0 0 chr4 95815201 95815250 -59814870 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1316 19282 178 39 56 chr4 95815250 95815752 -59814368 - Lx5 LINE L1 -3825 2052 1565 4 1316 1079 95 7 0 chr4 95815752 95815899 -59814221 - B1_Mus1 SINE Alu 0 148 1 4 1316 19282 188 68 37 chr4 95815899 95816531 -59813589 - Lx5 LINE L1 -4313 1564 889 4 1316 2612 273 53 38 chr4 95816677 95817725 -59812395 + RMER1B Other Other 1 1055 -11 4 1316 35 41 0 0 chr4 95818020 95818069 -59812051 + AT_rich Low_complexity Low_complexity 1 49 0 4 1316 331 345 60 48 chr4 95818680 95818948 -59811172 - L1MC4a LINE L1 -995 6887 6617 4 1316 453 277 93 21 chr4 95819261 95819401 -59810719 - B4 SINE B4 -117 175 26 4 1316 2941 30 0 0 chr4 95819455 95819792 -59810328 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1316 7163 20 3 0 chr4 95819792 95820647 -59809473 - IAPEz-int LTR ERVK 0 6481 5624 4 1316 20628 35 40 14 chr4 95820631 95823306 -59806814 - IAPEz-int LTR ERVK -3729 2752 8 4 1316 2941 30 0 0 chr4 95823306 95823643 -59806477 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1316 540 306 7 15 chr4 95823726 95823862 -59806258 + RSINE1 SINE B4 3 137 -28 4 1316 209 79 0 73 chr4 95825083 95825124 -59804996 + T-rich Low_complexity Low_complexity 1 38 0 4 1316 1105 88 0 0 chr4 95825124 95825271 -59804849 - B1_Mus1 SINE Alu 0 148 2 4 1316 475 247 60 90 chr4 95825468 95825668 -59804452 + B2_Mm2 SINE B2 2 195 0 4 1316 1072 299 34 40 chr4 95825861 95826240 -59803880 + Lx8 LINE L1 6598 6974 -499 4 1316 2809 41 19 0 chr4 95826242 95826605 -59803515 + L1Md_F2 LINE L1 6190 6559 -23 4 1316 444 329 21 102 chr4 95826900 95827184 -59802936 + Lx8 LINE L1 7213 7473 0 4 1316 562 254 22 7 chr4 95827702 95827841 -59802279 + B3A SINE B2 2 142 -56 4 1316 185 310 58 39 chr4 95828350 95828454 -59801666 + MIRc SINE MIR 53 158 -110 4 1316 22 0 0 0 chr4 95828629 95828651 -59801469 + AT_rich Low_complexity Low_complexity 1 22 0 4 1316 1610 98 0 0 chr4 95828853 95829099 -59801021 - MusHAL1 LINE L1 -983 1729 1484 4 1316 528 190 40 0 chr4 95829410 95829510 -59800610 - RLTR28B LTR ERVL -361 120 17 4 1316 2288 271 70 5 chr4 95829638 95830321 -59799799 + RMER1B Other Other 1 1046 -20 4 1316 21 0 0 0 chr4 95830332 95830353 -59799767 + AT_rich Low_complexity Low_complexity 1 21 0 4 1316 30 45 0 0 chr4 95830665 95830709 -59799411 + AT_rich Low_complexity Low_complexity 1 44 0 4 1316 32373 42 29 18 chr4 95830717 95832371 -59797749 - L1Md_T LINE L1 -1 6581 4886 4 1316 228 183 46 77 chr4 95832371 95832436 -59797684 + RMER20A LTR ERVK 186 248 -268 4 1316 32373 42 29 18 chr4 95832436 95836651 -59793469 - L1Md_T LINE L1 -1 4885 561 4 1316 314 354 66 44 chr4 95837246 95837429 -59792691 - L1MC4 LINE L1 -1135 6907 6721 4 1316 216 0 0 0 chr4 95838076 95838100 -59792020 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1316 195 139 0 0 chr4 95838579 95838615 -59791505 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4 1316 330 132 0 0 chr4 95838968 95839021 -59791099 + (CAG)n Simple_repeat Simple_repeat 1 53 0 4 1316 386 355 149 49 chr4 95839186 95839494 -59790626 + MLT1H LTR MaLR 29 367 -182 4 1316 1678 246 74 63 chr4 95839857 95840382 -59789738 + Lx6 LINE L1 6706 7236 -224 4 1316 280 256 12 0 chr4 95840452 95840538 -59789582 + Lx6 LINE L1 7373 7459 -1 4 1316 21 0 0 0 chr4 95841190 95841211 -59788909 + AT_rich Low_complexity Low_complexity 1 21 0 4 1316 544 276 0 6 chr4 95841341 95841512 -59788608 - MuRRS4-int LTR ERV1 -258 7520 7351 4 1316 1208 54 0 0 chr4 95841531 95841679 -59788441 - B1_Mus1 SINE Alu 0 148 1 4 1316 1704 309 35 9 chr4 95842019 95842779 -59787341 - MuRRS4-int LTR ERV1 -1017 4046 3545 4 1316 421 354 75 34 chr4 95843154 95843596 -59786524 - MuLV-int LTR ERV1 -3156 4450 3991 4 1316 729 322 69 54 chr4 95843626 95844643 -59785477 - MuRRS4-int LTR ERV1 -5216 2562 1306 4 1316 5033 111 49 0 chr4 95844663 95845539 -59784581 + MusHAL1 LINE L1 584 1484 -1869 4 1316 6007 3 0 0 chr4 95845538 95846210 -59783910 + L1Md_A LINE L1 4915 5586 -297 4 1316 9002 3 0 0 chr4 95846210 95847206 -59782914 + L1Md_A LINE L1 5587 6582 0 4 1316 21238 130 29 8 chr4 95847208 95848048 -59782072 + L1_Mm LINE L1 2026 2866 -3017 4 1316 501 17 0 0 chr4 95848048 95848106 -59782014 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 4 1316 21238 130 29 8 chr4 95848106 95849828 -59780292 + L1_Mm LINE L1 2867 4629 -1254 4 1316 263 28 28 0 chr4 95849828 95849864 -59780256 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 1316 21238 130 29 8 chr4 95849864 95850459 -59779661 + L1_Mm LINE L1 4630 5257 -626 4 1316 360 0 0 0 chr4 95850459 95850499 -59779621 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1316 21238 130 29 8 chr4 95850499 95850877 -59779243 + L1_Mm LINE L1 5258 5636 -247 4 1316 3307 105 6 40 chr4 95850879 95851403 -59778717 + L1_Mus2 LINE L1 6061 6566 0 4 1316 2795 102 7 10 chr4 95851424 95851828 -59778292 + RLTR9D LTR ERVK 1 403 0 4 1316 988 259 32 35 chr4 95851879 95852195 -59777925 + ETnERV2-int LTR ERVK 72 386 -2928 4 1316 4610 136 114 20 chr4 95852210 95853138 -59776982 + ETnERV2-int LTR ERVK 1071 2085 -5321 4 1316 2656 146 42 11 chr4 95853163 95853640 -59776480 + ETnERV2-int LTR ERVK 2496 2987 -4419 4 1316 4137 168 19 37 chr4 95853656 95855380 -59774740 + ETnERV2-int LTR ERVK 2356 4085 -3321 4 1316 1265 189 33 20 chr4 95855412 95855698 -59774422 + ETnERV2-int LTR ERVK 6222 6425 -981 4 1316 419 111 27 14 chr4 95855910 95855983 -59774137 + ETnERV2-int LTR ERVK 7331 7404 -2 4 1316 2634 120 7 17 chr4 95855984 95856391 -59773729 + RLTR9D LTR ERVK 1 403 0 4 1316 26 88 0 0 chr4 95856430 95856498 -59773622 + AT_rich Low_complexity Low_complexity 1 68 0 4 1316 803 199 0 46 chr4 95856988 95857162 -59772958 + RLTR22_Mur LTR ERVK 224 389 -1459 4 1316 13466 163 20 8 chr4 95857179 95859765 -59770355 - L1_Mm LINE L1 -1788 4095 1478 4 1316 1293 206 37 49 chr4 95859765 95860091 -59770029 - RLTR28 LTR ERVL -184 340 19 4 1316 2259 304 67 9 chr4 95860235 95861269 -59768851 + RMER1B Other Other 2 1066 0 4 1316 43 20 0 0 chr4 95861570 95861620 -59768500 + AT_rich Low_complexity Low_complexity 1 50 0 4 1316 267 339 22 14 chr4 95862236 95862427 -59767693 - L1MC4 LINE L1 -996 6886 6697 4 1316 430 340 76 7 chr4 95862826 95862971 -59767149 - B4 SINE B4 -127 165 11 4 1316 910 190 121 214 chr4 95863727 95864142 -59765978 + ORR1C2 LTR MaLR 5 380 -4 4 1316 22 35 0 0 chr4 95864780 95864809 -59765311 + AT_rich Low_complexity Low_complexity 1 29 0 4 1316 23 0 0 0 chr4 95865290 95865313 -59764807 + AT_rich Low_complexity Low_complexity 1 23 0 4 1316 294 362 122 61 chr4 95867569 95867816 -59762304 + MTEa LTR MaLR 35 296 -83 4 1316 230 381 12 0 chr4 95869170 95869254 -59760866 - MLT1A0 LTR MaLR -77 288 204 4 1316 261 0 0 0 chr4 95869258 95869287 -59760833 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1316 29 28 0 0 chr4 95869331 95869367 -59760753 + AT_rich Low_complexity Low_complexity 1 36 0 4 1316 460 340 32 7 chr4 95869371 95869525 -59760595 - RSINE1 SINE B4 -4 161 4 4 1316 183 80 0 0 chr4 95869706 95869731 -59760389 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1316 288 345 50 11 chr4 95870538 95870819 -59759301 - L1MB3 LINE L1 -212 5971 5680 4 1316 832 289 52 49 chr4 95870944 95871231 -59758889 + ORR1E LTR MaLR 1 288 -71 4 1316 35199 41 0 6 chr4 95871306 95875946 -59754174 + L1Md_T LINE L1 878 5589 -297 4 1316 8064 52 0 0 chr4 95875946 95876942 -59753178 + L1Md_T LINE L1 5590 6585 0 4 1316 15980 22 0 0 chr4 95876942 95878812 -59751308 + L1Md_T LINE L1 3717 5586 -297 4 1316 8397 35 0 0 chr4 95878812 95879808 -59750312 + L1Md_T LINE L1 5587 6582 0 4 1316 1538 305 68 44 chr4 95879816 95880458 -59749662 + ORR1E-int LTR MaLR 706 1363 -7 4 1316 315 361 54 50 chr4 95880469 95880711 -59749409 + ORR1E LTR MaLR 5 247 -112 4 1316 825 314 26 9 chr4 95880877 95881105 -59749015 + B4 SINE B4 16 247 -45 4 1316 205 266 0 12 chr4 95882149 95882229 -59747891 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 4 1316 186 43 0 0 chr4 95882231 95882254 -59747866 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 4 1316 1512 236 10 42 chr4 95882259 95882644 -59747476 - Lx4B LINE L1 -14 7044 6672 4 1316 1732 151 47 16 chr4 95882639 95883022 -59747098 - L1_Mur2 LINE L1 -2411 3466 3072 4 1316 261 342 164 55 chr4 95883694 95883969 -59746151 + MLT1D LTR MaLR 81 385 -120 4 1316 27 81 0 0 chr4 95885189 95885251 -59744869 + AT_rich Low_complexity Low_complexity 1 62 0 4 1316 1386 159 29 0 chr4 95885744 95886020 -59744100 + Lx4A LINE L1 2918 3201 -2676 4 1316 492 219 28 9 chr4 95886020 95886126 -59743994 - RLTR31A_Mm LTR ERVK 0 557 450 4 1316 1209 169 16 11 chr4 95886140 95886374 -59743746 - RLTR31A_Mm LTR ERVK -324 237 1 4 1316 3560 153 35 6 chr4 95886375 95887059 -59743061 + Lx4A LINE L1 3197 3900 -1977 4 1316 6449 163 17 6 chr4 95887036 95888567 -59741553 + Lx4A LINE L1 4665 6224 -834 4 1316 657 246 153 0 chr4 95889283 95889466 -59740654 + B3 SINE B2 1 211 -5 4 1316 1086 216 124 3 chr4 95890500 95890798 -59739322 + Lx9 LINE L1 7234 7567 -77 4 1316 3503 50 0 5 chr4 95891116 95891555 -59738565 + L1Md_F2 LINE L1 6146 6582 0 4 1316 322 239 162 18 chr4 95891649 95891760 -59738360 - RLTR21 LTR ERVK -105 1467 1341 4 1316 4234 179 23 0 chr4 95891763 95892547 -59737573 - RMER12 LTR ERVK -520 802 1 4 1316 973 226 195 3 chr4 95892580 95892908 -59737212 - RMER1B Other Other -1 1065 675 4 1316 446 88 0 1 chr4 95892939 95893002 -59737118 + Lx6 LINE L1 5827 5889 -1087 4 1316 941 88 81 0 chr4 95893002 95893138 -59736982 + B1_Mus1 SINE Alu 2 148 0 4 1316 257 261 9 18 chr4 95893138 95893187 -59736933 + Lx6 LINE L1 5890 5939 -1037 4 1316 507 182 20 0 chr4 95893234 95893333 -59736787 + Lx5 LINE L1 5879 5979 -1071 4 1316 2635 274 35 0 chr4 95893330 95893926 -59736194 + Lx5 LINE L1 6415 7031 -19 4 1316 226 50 24 24 chr4 95893926 95893967 -59736153 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 1316 743 219 6 0 chr4 95894398 95894576 -59735544 + CT-rich Low_complexity Low_complexity 2 180 0 4 1316 819 169 6 17 chr4 95894543 95894659 -59735461 + polypyrimidine Low_complexity Low_complexity 68 180 0 4 1316 1269 83 0 0 chr4 95894659 95894839 -59735281 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1316 819 169 6 17 chr4 95894839 95894903 -59735217 + polypyrimidine Low_complexity Low_complexity 3 67 0 4 1316 215 343 28 56 chr4 95895104 95895212 -59734908 + L2b LINE L2 3270 3374 -1 4 1316 405 0 0 0 chr4 95895957 95896002 -59734118 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1316 254 232 118 66 chr4 95896492 95896644 -59733476 - Lx8 LINE L1 0 7473 7314 4 1316 707 230 125 0 chr4 95897687 95897887 -59732233 - URR1A DNA MER1_type 0 226 2 4 1316 181 194 0 0 chr4 95899230 95899266 -59730854 + MIRm SINE MIR 241 276 0 5 1316 191 301 137 21 chr4 95899659 95899754 -59730366 + MIRc SINE MIR 21 126 -142 5 1316 283 22 0 80 chr4 95900678 95900728 -59729392 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 5 1316 492 128 0 0 chr4 95900728 95900805 -59729315 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1316 313 216 0 0 chr4 95901108 95901182 -59728938 + L1MD LINE L1 2746 2819 -3327 5 1316 6059 58 0 0 chr4 95901247 95902011 -59728109 + L1Md_F3 LINE L1 4823 5586 -297 5 1316 7875 46 6 3 chr4 95902012 95903022 -59727098 + L1Md_F3 LINE L1 5588 6584 0 5 1316 2468 299 67 15 chr4 95903749 95904702 -59725418 + RMER1C Other Other 344 1334 -8 5 1316 345 24 0 0 chr4 95905113 95905155 -59724965 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1316 839 197 104 42 chr4 95905870 95906082 -59724038 - RLTR25B LTR ERVK 0 1103 879 5 1316 231 173 0 0 chr4 95906114 95906166 -59723954 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1316 708 229 33 5 chr4 95906175 95906359 -59723761 - RLTR25B LTR ERVK -200 903 715 5 1316 36 0 0 0 chr4 95906359 95906395 -59723725 + AT_rich Low_complexity Low_complexity 1 36 0 5 1316 2174 52 4 0 chr4 95906396 95906665 -59723455 - L1Md_F2 LINE L1 -2 6580 6311 5 1316 7538 77 0 1 chr4 95906665 95907638 -59722482 - L1_Mus1 LINE L1 -9 6558 5587 5 1316 3056 193 47 16 chr4 95907656 95908268 -59721852 - RLTR25B LTR ERVK -383 645 15 5 1316 282 226 47 23 chr4 95908776 95908862 -59721258 - RLTR23 LTR ERV1 -19 411 324 5 1316 8317 205 73 11 chr4 95908887 95911272 -59718848 - L1_Mur1 LINE L1 -2438 3439 879 5 1316 483 18 0 0 chr4 95911664 95911720 -59718400 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 5 1316 333 0 0 0 chr4 95911720 95911756 -59718364 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 5 1316 742 206 74 6 chr4 95911759 95911935 -59718185 - Lx3_Mus LINE L1 -1 7008 6821 5 1316 381 145 14 0 chr4 95911935 95912004 -59718116 - Lx3_Mus LINE L1 -954 6055 5986 5 1316 757 336 20 20 chr4 95913079 95913334 -59716786 - B4 SINE B4 -14 278 24 5 1316 480 48 0 0 chr4 95913744 95913807 -59716313 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1316 406 359 128 12 chr4 95914579 95914830 -59715290 + MLT1H LTR MaLR 18 297 -252 5 1316 331 253 24 0 chr4 95915614 95915697 -59714423 + Lx6 LINE L1 6771 6855 -605 5 1316 435 38 0 0 chr4 95915697 95915750 -59714370 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1316 807 11 0 0 chr4 95915750 95915841 -59714279 + (GA)n Simple_repeat Simple_repeat 2 93 0 5 1316 949 228 120 19 chr4 95915849 95916158 -59713962 + Lx6 LINE L1 7110 7449 -11 5 1316 205 311 22 11 chr4 95917546 95917637 -59712483 + L2 LINE L2 2625 2716 -703 5 1316 187 390 24 12 chr4 95918240 95918323 -59711797 + MIRb SINE MIR 4 87 -181 5 1316 228 268 0 14 chr4 95918323 95918395 -59711725 + (TAA)n Simple_repeat Simple_repeat 1 71 0 5 1316 282 266 10 50 chr4 95918623 95918722 -59711398 - RLTR22_Mur LTR ERVK -1750 98 4 5 1316 239 359 47 0 chr4 95919095 95919287 -59710833 + L1_Rod LINE L1 2215 2415 -3432 5 1316 1666 66 4 54 chr4 95920027 95920267 -59709853 - L1Md_F2 LINE L1 -438 6144 5917 5 1316 32315 64 9 6 chr4 95920267 95921618 -59708502 - L1Md_F3 LINE L1 0 6636 5244 5 1316 189 0 0 0 chr4 95921618 95921639 -59708481 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1316 32315 87 8 21 chr4 95921639 95922431 -59707689 - L1Md_F3 LINE L1 -640 5243 4483 5 1316 4373 132 0 41 chr4 95922431 95923168 -59706952 - L1Md_F2 LINE L1 0 6582 5876 5 1316 32315 101 8 22 chr4 95923168 95927349 -59702771 - L1Md_F3 LINE L1 -1401 4482 345 5 1316 746 105 32 0 chr4 95927347 95927471 -59702649 - L1_Mur2 LINE L1 -1414 4463 4336 5 1316 922 138 7 7 chr4 95927462 95927606 -59702514 - L1_Mm LINE L1 -175 5708 5564 5 1316 3981 113 17 3 chr4 95927606 95928210 -59701910 + L1_Mus3 LINE L1 6025 6636 -2 5 1316 7152 154 8 11 chr4 95928220 95928574 -59701546 - MusHAL1 LINE L1 -546 2166 1813 5 1316 3437 23 2 0 chr4 95928574 95928969 -59701151 + MTA_Mm LTR MaLR 1 396 0 5 1316 7152 154 8 11 chr4 95928969 95929911 -59700209 - MusHAL1 LINE L1 -900 1812 873 5 1316 36706 32 2 7 chr4 95929933 95935162 -59694958 + L1Md_A LINE L1 392 5586 -297 5 1316 8357 36 0 0 chr4 95935162 95936157 -59693963 + L1Md_T LINE L1 5587 6581 -1 5 1316 2537 195 58 41 chr4 95936157 95937401 -59692719 - L1VL4 LINE L1 -2151 1464 35 5 1316 2231 204 72 40 chr4 95938223 95938775 -59691345 + RLTR20B3 LTR ERVK 8 577 0 5 1316 238 355 0 50 chr4 95939383 95939463 -59690657 + RSINE1 SINE B4 61 136 -29 5 1316 225 344 99 52 chr4 95940643 95940815 -59689305 + L2b LINE L2 3195 3374 -1 5 1316 325 333 90 7 chr4 95941250 95941395 -59688725 - RLTR22_Mur LTR ERVK 0 1848 1692 5 1316 2699 245 25 28 chr4 95941819 95942570 -59687550 - RLTR22_Mur LTR ERVK -1099 749 1 5 1316 6367 62 5 6 chr4 95943442 95944251 -59685869 - RLTR13C2 LTR ERVK 0 808 1 5 1317 3719 127 55 8 chr4 95944920 95945454 -59684666 - Lx3A LINE L1 -510 6471 5914 5 1317 510 17 0 0 chr4 95945454 95945513 -59684607 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1317 3719 127 55 8 chr4 95945513 95945636 -59684484 - Lx3A LINE L1 -1068 5913 5785 5 1317 7083 102 8 0 chr4 95945662 95946816 -59683304 - L1_Mus3 LINE L1 -7 6631 5469 5 1317 654 197 17 0 chr4 95946817 95946934 -59683186 + ETnERV2-int LTR ERVK 7070 7188 -218 5 1317 364 248 0 71 chr4 95947526 95947652 -59682468 + RMER16-int LTR ERVK 188 304 -6940 5 1317 1827 155 131 19 chr4 95947861 95948372 -59681748 + RMER16-int LTR ERVK 192 670 -4736 5 1317 352 172 280 0 chr4 95948375 95948468 -59681652 + RMER16-int LTR ERVK 938 1056 -5081 5 1317 856 247 73 5 chr4 95948542 95948762 -59681358 + ETnERV2-int LTR ERVK 2519 2753 -4653 5 1317 270 0 0 0 chr4 95948778 95948808 -59681312 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1317 9325 145 43 8 chr4 95948816 95950495 -59679625 + ETnERV2-int LTR ERVK 2941 4679 -2727 5 1317 2831 74 7 2 chr4 95950493 95950898 -59679222 + ETnERV2-int LTR ERVK 5356 5762 -1644 5 1317 3956 163 89 71 chr4 95950886 95951923 -59678197 + RLTR45-int LTR ERVK 4672 5726 -1518 5 1317 259 237 38 38 chr4 95952508 95952587 -59677533 + MuRRS4-int LTR ERV1 4380 4458 -605 5 1317 502 221 128 7 chr4 95952674 95952815 -59677305 + RLTR4_MM-int LTR ERV1 7134 7291 -310 5 1317 1055 269 14 12 chr4 95952702 95953048 -59677072 + ETnERV2-int LTR ERVK 7455 7748 -469 5 1317 4246 154 19 19 chr4 95953101 95953801 -59676319 + ETnERV2-int LTR ERVK 6494 7193 -213 5 1317 1690 166 8 9 chr4 95954142 95954517 -59675603 - L1_Mm LINE L1 -2442 5553 5151 5 1317 9185 110 34 18 chr4 95954514 95955055 -59675065 - L1_Mur1 LINE L1 -88 5798 5251 5 1317 216 0 0 0 chr4 95955055 95955079 -59675041 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1317 9185 110 34 18 chr4 95955079 95956117 -59674003 - L1_Mur1 LINE L1 -636 5250 4195 5 1317 2763 150 29 26 chr4 95956117 95956609 -59673511 + Lx3A LINE L1 6478 6970 -11 5 1317 198 128 0 0 chr4 95956612 95956651 -59673469 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 1317 5199 112 28 5 chr4 95956774 95957549 -59672571 - L1_Mus4 LINE L1 -7 6629 5837 5 1317 1098 69 7 0 chr4 95957567 95957712 -59672408 + L1_Mus2 LINE L1 6411 6556 -10 5 1317 2898 41 3 0 chr4 95957712 95958057 -59672063 + ORR1A0 LTR MaLR 1 346 0 5 1317 5756 89 11 0 chr4 95958057 95958897 -59671223 + ORR1A0-int LTR MaLR 1 849 -943 5 1317 3071 43 5 8 chr4 95958881 95959280 -59670840 + ORR1A0-int LTR MaLR 1395 1792 0 5 1317 2941 46 0 0 chr4 95959280 95959626 -59670494 + ORR1A0 LTR MaLR 1 346 0 5 1317 4675 36 53 2 chr4 95959768 95960348 -59669772 - L1Md_F3 LINE L1 0 6584 5975 5 1317 5222 47 1 0 chr4 95960348 95961031 -59669089 + L1_Mm LINE L1 4226 4909 -974 5 1317 35 41 0 0 chr4 95961184 95961233 -59668887 + AT_rich Low_complexity Low_complexity 1 49 0 5 1317 255 400 74 12 chr4 95962424 95962586 -59667534 - B4 SINE B4 -118 174 3 5 1317 732 267 22 6 chr4 95963340 95963521 -59666599 + ORR1C1 LTR MaLR 3 186 -192 5 1317 241 176 0 42 chr4 95963523 95963594 -59666526 + CT-rich Low_complexity Low_complexity 1 68 0 5 1317 712 263 63 63 chr4 95963595 95963802 -59666318 + ORR1C1 LTR MaLR 174 380 -4 5 1317 3777 52 2 0 chr4 95965532 95965992 -59664128 - L1_Mus1 LINE L1 -1 6566 6106 5 1317 3261 40 9 2 chr4 95965992 95966415 -59663705 + L1_Mus1 LINE L1 5620 6045 -522 5 1317 320 330 78 74 chr4 95966938 95967196 -59662924 + MTEa LTR MaLR 6 264 -115 5 1317 261 329 51 0 chr4 95967233 95967312 -59662808 - RLTR25B LTR ERVK -922 106 24 5 1317 36705 55 21 12 chr4 95967452 95973868 -59656252 - L1Md_T LINE L1 -2 6580 106 5 1317 7512 47 17 0 chr4 95974199 95975676 -59654444 - L1Md_F2 LINE L1 -14 6568 5066 5 1317 3396 77 30 0 chr4 95975664 95976195 -59653925 - L1Md_F2 LINE L1 -3694 2189 1643 5 1317 3288 78 2 10 chr4 95976181 95976663 -59653457 + L1_Mm LINE L1 4598 5075 -808 5 1317 8062 65 0 0 chr4 95976660 95977764 -59652356 + L1_Mm LINE L1 3492 4595 -1288 5 1317 392 325 26 0 chr4 95978095 95978212 -59651908 - RSINE1 SINE B4 -44 121 2 5 1317 1932 208 44 7 chr4 95979328 95979764 -59650356 - RLTR11B LTR ERVK 0 453 2 5 1317 316 0 0 43 chr4 95979785 95979831 -59650289 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1317 692 304 82 31 chr4 95980049 95980304 -59649816 + ORR1E LTR MaLR 8 275 -95 5 1317 1830 295 44 102 chr4 95980304 95980870 -59649250 + ORR1E-int LTR MaLR 614 1139 -231 5 1317 532 256 87 79 chr4 95980870 95981226 -59648894 + RLTR10D LTR ERVK 1 359 0 5 1317 1830 295 44 102 chr4 95981226 95981447 -59648673 + ORR1E-int LTR MaLR 1140 1356 -14 5 1317 598 333 32 40 chr4 95981467 95981714 -59648406 + ORR1E LTR MaLR 7 251 -119 5 1317 922 304 22 9 chr4 95981874 95982103 -59648017 + B4 SINE B4 16 247 -45 5 1317 921 292 16 16 chr4 95983186 95983489 -59646631 - Lx6 LINE L1 -25 7435 7133 5 1317 662 245 89 72 chr4 95983816 95984053 -59646067 + MT2A LTR ERVL 1 241 -292 5 1317 488 62 0 0 chr4 95984053 95984117 -59646003 - Lx2 LINE L1 -1280 5717 5654 5 1317 556 173 0 0 chr4 95984117 95984221 -59645899 + Lx2 LINE L1 6883 6986 -11 5 1317 375 279 76 42 chr4 95984245 95984434 -59645686 + MT2A LTR ERVL 332 525 -76 5 1317 378 42 0 0 chr4 95984435 95984483 -59645637 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1317 255 392 93 36 chr4 95984717 95984942 -59645178 + ORR1E LTR MaLR 2 239 -120 5 1317 302 297 166 39 chr4 95985459 95985718 -59644402 + MLT1D LTR MaLR 26 317 -188 5 1317 32 109 0 0 chr4 95987006 95987143 -59642977 + AT_rich Low_complexity Low_complexity 1 137 0 5 1317 1122 82 0 7 chr4 95987396 95987543 -59642577 + B1_Mm SINE Alu 2 147 0 5 1317 215 73 0 47 chr4 95987545 95987588 -59642532 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 5 1317 2269 165 54 12 chr4 95987895 95988324 -59641796 + RLTR26 LTR ERVK 3 449 -193 5 1317 4883 43 2 7 chr4 95988329 95988931 -59641189 + L1Md_F2 LINE L1 5981 6579 -3 5 1317 373 270 108 26 chr4 95989296 95989490 -59640630 + B3 SINE B2 1 210 -6 5 1317 340 309 36 18 chr4 95989822 95989990 -59640130 + L1M4 LINE L1 2143 2313 -3833 5 1317 750 237 127 18 chr4 95990435 95990718 -59639402 + Lx9 LINE L1 7239 7552 -92 5 1317 237 93 0 44 chr4 95990701 95990746 -59639374 - L1_Mur1 LINE L1 -833 5053 5011 5 1317 2589 223 58 91 chr4 95990756 95991751 -59638369 - RLTR22_Mur LTR ERVK -590 1258 296 6 1317 720 75 28 9 chr4 95991776 95991883 -59638237 + RMER17D LTR ERVK 1 109 -780 6 1317 1030 198 25 131 chr4 95991883 95992243 -59637877 + RLTRETN_Mm LTR ERVK 1 322 0 6 1317 6058 121 14 80 chr4 95992247 95993455 -59636665 + ETnERV2-int LTR ERVK 3 1130 -3714 6 1317 2605 112 36 57 chr4 95993478 95994137 -59635983 + ETnERV2-int LTR ERVK 1735 2187 -2657 6 1317 4731 145 39 13 chr4 95994383 95995992 -59634128 + ETnERV2-int LTR ERVK 2356 4085 -3321 6 1317 6433 131 13 6 chr4 95996098 95997073 -59633047 + ETnERV2-int LTR ERVK 6227 7208 -198 6 1317 423 250 314 11 chr4 95997073 95997360 -59632760 + RLTR13D6 LTR ERVK 158 531 -371 6 1317 425 138 0 48 chr4 95997360 95997444 -59632676 + ETnERV2-int LTR ERVK 7324 7403 -3 6 1317 1126 179 25 133 chr4 95997446 95997807 -59632313 + RLTRETN_Mm LTR ERVK 1 322 0 6 1317 3609 109 132 85 chr4 95997807 95998558 -59631562 + RMER17D LTR ERVK 104 889 0 6 1317 1900 145 28 6 chr4 95998558 95998911 -59631209 - L1_Mur1 LINE L1 -876 5010 4650 5 1317 1179 40 40 0 chr4 95998903 95999055 -59631065 - L1Md_F2 LINE L1 -428 6154 5997 6 1317 3620 33 5 0 chr4 95999055 95999511 -59630609 + L1Md_F2 LINE L1 6149 6582 0 6 1317 2263 145 75 6 chr4 95999527 95999993 -59630127 - L1_Mur1 LINE L1 -1220 4666 4169 5 1317 333 136 0 0 chr4 96000000 96000072 -59630048 - L1_Mur2 LINE L1 -1725 4161 4081 1 1317 7133 157 13 12 chr4 96000063 96001964 -59628156 + Lx3C LINE L1 5072 6974 -2 2 1317 3754 62 0 0 chr4 96002042 96002539 -59627581 - L1_Mm LINE L1 -229 5654 5158 3 1317 4016 89 4 7 chr4 96002539 96003092 -59627028 + L1Md_F2 LINE L1 6020 6570 -12 4 1317 28 61 0 0 chr4 96003108 96003157 -59626963 + AT_rich Low_complexity Low_complexity 1 49 0 5 1317 2316 221 89 25 chr4 96003381 96004011 -59626109 - RMER1B Other Other -2 1064 395 6 1317 1903 213 25 14 chr4 96004030 96004464 -59625656 + L1_Mus3 LINE L1 5827 6265 -785 7 1317 2056 140 37 6 chr4 96004463 96004928 -59625192 + L1_Mus3 LINE L1 6309 6997 0 7 1317 282 138 0 0 chr4 96004958 96005016 -59625104 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 8 1317 1539 239 73 5 chr4 96005017 96005400 -59624720 + Lx5 LINE L1 6588 6996 -54 9 1317 861 96 0 0 chr4 96005508 96005633 -59624487 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1 1317 21 57 0 0 chr4 96005658 96005693 -59624427 + AT_rich Low_complexity Low_complexity 1 35 0 1 1317 294 95 0 0 chr4 96005987 96006029 -59624091 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1317 858 83 0 0 chr4 96006051 96006171 -59623949 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 1 1317 235 219 20 172 chr4 96006402 96006501 -59623619 + L2b LINE L2 3274 3357 -18 1 1317 254 135 19 0 chr4 96006992 96007044 -59623076 + MusHAL1 LINE L1 1130 1182 -1530 1 1317 1227 125 14 0 chr4 96007013 96007221 -59622899 + MusHAL1 LINE L1 1304 1514 -1198 1 1317 2818 27 0 0 chr4 96007225 96007563 -59622557 - ORR1A0 LTR MaLR -8 338 1 1 1317 2728 135 2 8 chr4 96007564 96008042 -59622078 + MusHAL1 LINE L1 1514 1988 -724 1 1317 6685 114 14 6 chr4 96008055 96009149 -59620971 - Lx LINE L1 -8 6646 5553 1 1317 3603 84 6 2 chr4 96009149 96009637 -59620483 + L1_Mus2 LINE L1 6076 6565 -1 1 1317 739 132 8 4 chr4 96010648 96010792 -59619328 - L1_Rod LINE L1 -595 3319 3189 1 1317 1125 88 0 0 chr4 96010803 96010962 -59619158 + Lx2A LINE L1 5588 5746 -1262 2 1317 596 339 1 4 chr4 96011277 96011460 -59618660 + Lx5 LINE L1 6812 6995 -63 2 1317 777 204 30 0 chr4 96012769 96012936 -59617184 - URR1A DNA MER1_type -9 217 46 2 1317 189 266 129 30 chr4 96013082 96013214 -59616906 + MIRc SINE MIR 82 226 -42 2 1317 481 331 144 40 chr4 96013572 96014226 -59615894 + L1MDa LINE L1 1822 2543 -4090 2 1317 291 28 0 0 chr4 96014422 96014458 -59615662 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1317 315 0 0 0 chr4 96014637 96014672 -59615448 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1317 253 226 0 0 chr4 96014775 96014837 -59615283 + L1MDa LINE L1 3137 3198 -3339 2 1317 1877 305 82 30 chr4 96015667 96016153 -59613967 + RMER1C Other Other 420 931 -411 2 1317 938 122 6 0 chr4 96016153 96016309 -59613811 + L1_Mus2 LINE L1 6410 6566 0 2 1317 602 68 11 0 chr4 96016319 96016407 -59613713 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 2 1317 1877 305 82 30 chr4 96016407 96016775 -59613345 + RMER1C Other Other 952 1329 -13 2 1317 506 189 9 0 chr4 96017088 96017199 -59612921 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1317 447 19 0 0 chr4 96017298 96017350 -59612770 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1317 232 62 0 0 chr4 96017455 96017487 -59612633 - L1Md_T LINE L1 -195 6387 6356 3 1317 568 200 52 30 chr4 96017775 96017909 -59612211 - B1_Mur1 SINE Alu -1 148 12 3 1317 669 86 0 0 chr4 96017938 96018031 -59612089 + (TCC)n Simple_repeat Simple_repeat 3 95 0 3 1317 250 0 48 48 chr4 96018031 96018073 -59612047 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 3 1317 698 23 11 0 chr4 96018073 96018160 -59611960 - B1_Mus2 SINE Alu 0 147 60 3 1317 216 0 0 0 chr4 96018232 96018256 -59611864 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1317 429 20 0 0 chr4 96020661 96020711 -59609409 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1317 2325 124 113 0 chr4 96021001 96021363 -59608757 - RLTR44A LTR ERVK 0 405 3 3 1317 620 183 43 0 chr4 96021454 96021569 -59608551 - RLTR28B LTR ERVL -361 120 1 4 1317 1457 263 164 7 chr4 96021681 96022317 -59607803 + RMER1B Other Other 1 1052 -14 4 1317 45 45 0 0 chr4 96022603 96022669 -59607451 + AT_rich Low_complexity Low_complexity 1 66 0 4 1317 262 345 47 0 chr4 96023269 96023417 -59606703 - L1MC4 LINE L1 -1131 6911 6757 4 1317 420 55 0 0 chr4 96023781 96023836 -59606284 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 1317 250 355 13 0 chr4 96023913 96023989 -59606131 - B4A SINE B4 -204 88 12 4 1317 1788 230 10 5 chr4 96024163 96024561 -59605559 - RLTR11A LTR ERVK 0 528 129 4 1317 555 62 0 0 chr4 96025241 96025321 -59604799 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 1317 354 336 13 45 chr4 96027098 96027122 -59602998 + B4 SINE B4 70 220 -72 4 1317 626 229 8 8 chr4 96027122 96027254 -59602866 + B1_Mus2 SINE Alu 10 141 -6 4 1317 1739 335 53 14 chr4 96028299 96029169 -59600951 + RMER1C Other Other 387 1253 -89 5 1317 10890 104 16 12 chr4 96029187 96031577 -59598543 + L1Md_A LINE L1 456 2848 -3035 5 1317 18372 50 115 1 chr4 96031578 96034936 -59595184 - L1Md_F2 LINE L1 -1 6581 2840 5 1317 18593 59 3 11 chr4 96034937 96038236 -59591884 + L1Md_A LINE L1 416 3683 -2200 5 1317 318 250 31 8 chr4 96038251 96038380 -59591740 + CT-rich Low_complexity Low_complexity 2 133 0 5 1317 343 326 98 14 chr4 96038403 96038546 -59591574 - HAL1-3A_ME LINE L1 -419 2439 2285 5 1317 204 213 0 51 chr4 96038553 96038632 -59591488 + CT-rich Low_complexity Low_complexity 3 77 0 5 1317 306 315 111 46 chr4 96038663 96038816 -59591304 - HAL1-3A_ME LINE L1 -410 2448 2286 5 1317 304 315 88 27 chr4 96038825 96038972 -59591148 - HAL1-3A_ME LINE L1 -419 2439 2284 5 1317 198 103 0 0 chr4 96038973 96039002 -59591118 + (CCCCCT)n Simple_repeat Simple_repeat 3 31 0 5 1317 1599 5 0 0 chr4 96039003 96039216 -59590904 + (TTC)n Simple_repeat Simple_repeat 1 213 0 5 1317 462 234 19 0 chr4 96039389 96039496 -59590624 - MTC LTR MaLR -312 109 1 6 1317 1375 252 33 30 chr4 96040463 96040827 -59589293 + MTEb LTR MaLR 1 365 -14 6 1317 3856 186 21 11 chr4 96041647 96042391 -59587729 - RMER12 LTR ERVK -570 752 1 6 1317 1136 280 168 2 chr4 96042423 96042976 -59587144 - RMER1B Other Other -13 1053 333 6 1317 300 111 0 0 chr4 96042989 96043034 -59587086 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1317 4593 246 39 18 chr4 96043040 96044225 -59585895 + Lx5 LINE L1 5833 7042 -8 6 1317 22 0 0 0 chr4 96044225 96044247 -59585873 + AT_rich Low_complexity Low_complexity 1 22 0 6 1317 27 0 0 0 chr4 96044374 96044401 -59585719 + AT_rich Low_complexity Low_complexity 1 27 0 6 1317 2482 50 0 0 chr4 96044401 96044721 -59585399 + L1Md_F3 LINE L1 5267 5586 -297 6 1317 7811 53 7 0 chr4 96044721 96045698 -59584422 + L1Md_F3 LINE L1 5587 6570 -14 6 1317 24 32 0 0 chr4 96045842 96045873 -59584247 + AT_rich Low_complexity Low_complexity 1 31 0 6 1317 561 201 11 4 chr4 96046173 96046432 -59583688 + CT-rich Low_complexity Low_complexity 1 260 0 7 1317 324 0 0 0 chr4 96047093 96047129 -59582991 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1317 263 383 115 58 chr4 96047196 96047404 -59582716 - B4 SINE B4 -6 286 67 7 1317 879 206 30 128 chr4 96047405 96047734 -59582386 - L1_Mur2 LINE L1 -1674 4203 3907 7 1317 1272 142 139 17 chr4 96047734 96048021 -59582099 - RLTRETN_Mm LTR ERVK 0 322 1 7 1317 681 190 35 14 chr4 96048021 96048165 -59581955 - MMETn-int LTR ERVK 0 4844 4698 7 1317 246 239 67 22 chr4 96048165 96048255 -59581865 - RLTR13D6 LTR ERVK -462 440 347 7 1317 15053 133 17 29 chr4 96048270 96048607 -59581513 - ETnERV2-int LTR ERVK -175 7231 6902 7 1317 3977 180 25 21 chr4 96048607 96049459 -59580661 + RLTR13A LTR ERVK 1 855 0 7 1317 15053 126 31 25 chr4 96049459 96053964 -59576156 - ETnERV2-int LTR ERVK -505 6901 1730 7 1317 7848 101 24 45 chr4 96053978 96055311 -59574809 - ETnERV2-int LTR ERVK -3538 1306 2 7 1317 1567 147 8 101 chr4 96055312 96055667 -59574453 - RLTRETN_Mm LTR ERVK 0 322 1 7 1317 248 106 0 41 chr4 96055667 96055716 -59574404 - L1_Mur2 LINE L1 -1965 3912 3866 7 1317 902 230 36 8 chr4 96055715 96055965 -59574155 + Lx2B LINE L1 5819 6075 -925 7 1317 2900 31 7 149 chr4 96055965 96056420 -59573700 + RLTR10 LTR ERVK 1 390 0 7 1317 5784 50 66 117 chr4 96056430 96057433 -59572687 + RLTR10-int LTR ERVK 41 992 -995 7 1317 320 289 12 25 chr4 96057477 96057640 -59572480 + RLTR10-int LTR ERVK 1434 1594 -5987 7 1317 8380 20 0 0 chr4 96057722 96058713 -59571407 + RLTR10-int LTR ERVK 990 1980 -7 8 1317 2881 31 7 150 chr4 96058720 96059173 -59570947 + RLTR10 LTR ERVK 1 388 -2 8 1317 2460 276 36 13 chr4 96059173 96060047 -59570073 + Lx4B LINE L1 6024 6783 -275 8 1317 855 324 41 6 chr4 96060543 96060906 -59569214 + Lx8 LINE L1 6618 6993 -480 8 1317 220 196 0 21 chr4 96060998 96061045 -59569075 - L3b LINE CR1 -241 241 196 8 1317 212 242 0 16 chr4 96061136 96061199 -59568921 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1317 23 0 0 0 chr4 96061214 96061237 -59568883 + AT_rich Low_complexity Low_complexity 1 23 0 8 1317 1120 15 0 0 chr4 96061511 96061643 -59568477 + LTRIS_Mm LTR ERV1 1 132 -350 8 1317 891 62 0 58 chr4 96061613 96061750 -59568370 + LTRIS_Mm LTR ERV1 354 482 0 8 1317 7559 57 5 32 chr4 96061750 96063064 -59567056 + MuRRS-int LTR ERV1 1 1505 -3185 8 1317 5794 51 4 11 chr4 96063062 96063812 -59566308 + MuRRS-int LTR ERV1 3946 4690 0 8 1317 4227 27 0 0 chr4 96063812 96064294 -59565826 + LTRIS_Mm LTR ERV1 1 482 0 8 1317 306 265 185 21 chr4 96065917 96066106 -59564014 + L1MDa LINE L1 1575 1794 -4839 8 1317 12483 88 12 4 chr4 96066475 96068660 -59561460 - L1Md_F2 LINE L1 -351 6231 4028 8 1317 8513 109 17 9 chr4 96068636 96070787 -59559333 - L1Md_F2 LINE L1 -3367 2516 349 8 1317 2111 322 32 36 chr4 96071235 96072266 -59557854 + RMER1C Other Other 399 1334 -8 9 1317 426 69 0 0 chr4 96072675 96072733 -59557387 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1317 5347 141 5 6 chr4 96072819 96073703 -59556417 + L1_Mus4 LINE L1 5748 6630 -6 9 1317 1175 224 13 176 chr4 96074409 96074647 -59555473 - RLTR25B LTR ERVK 0 1103 911 9 1317 405 0 0 0 chr4 96074647 96074692 -59555428 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1317 1175 224 13 176 chr4 96074692 96074918 -59555202 - RLTR25B LTR ERVK -193 910 715 9 164 9398 39 8 3 chr4 96074918 96076802 -59553318 - L1Md_F2 LINE L1 -2 6580 4690 9 1318 2590 193 71 82 chr4 96076802 96076872 -59553248 - RLTR25B LTR ERVK -360 668 595 9 1318 1136 76 7 0 chr4 96076872 96077017 -59553103 + B1_Mus2 SINE Alu 1 146 -1 9 1318 2590 193 71 82 chr4 96077017 96077607 -59552513 - RLTR25B LTR ERVK -434 594 15 9 1318 268 235 67 45 chr4 96078103 96078192 -59551928 - RLTR23 LTR ERV1 -1 429 339 9 1318 217 27 26 51 chr4 96078741 96078780 -59551340 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 9 1318 22 0 0 0 chr4 96078870 96078892 -59551228 + AT_rich Low_complexity Low_complexity 1 22 0 9 1318 847 133 0 0 chr4 96079286 96079414 -59550706 + ORR1B1 LTR MaLR 265 392 -2 1 1318 10811 212 58 17 chr4 96079414 96082689 -59547431 - L1_Mur2 LINE L1 -1577 4300 890 1 1318 583 371 62 33 chr4 96084127 96084400 -59545720 - B4 SINE B4 0 292 12 1 1318 2355 113 54 0 chr4 96084732 96085103 -59545017 - L1_Mus3 LINE L1 -2 6636 6246 1 1318 228 274 50 29 chr4 96085187 96085326 -59544794 + RMER17C LTR ERVK 128 269 -141 1 1318 231 279 16 16 chr4 96086202 96086264 -59543856 - B4A SINE B4 -100 192 131 1 1318 657 56 0 0 chr4 96086283 96086373 -59543747 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1318 20906 113 8 0 chr4 96087420 96090741 -59539379 - L1_Mm LINE L1 -674 5209 1864 1 1318 45 96 0 0 chr4 96090780 96090916 -59539204 + AT_rich Low_complexity Low_complexity 1 136 0 1 1318 1225 242 42 7 chr4 96090943 96091230 -59538890 - Lx2 LINE L1 -7 6993 6697 1 1318 2769 160 8 21 chr4 96091197 96091760 -59538360 - Lx2 LINE L1 -1083 5914 5362 1 1318 560 14 14 0 chr4 96091768 96091837 -59538283 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 1 1318 4971 110 1 1 chr4 96091837 96092586 -59537534 - L1_Mus4 LINE L1 -23 6613 5865 1 1318 1414 159 4 0 chr4 96092581 96092838 -59537282 + L1_Mur2 LINE L1 5081 5338 -539 1 1318 16658 188 39 9 chr4 96092838 96093268 -59536852 - Lx2 LINE L1 -726 5160 4731 1 1318 259 25 0 48 chr4 96093268 96093310 -59536810 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1318 16658 188 39 9 chr4 96093310 96096467 -59533653 - Lx2 LINE L1 -1156 4730 1511 1 1318 195 42 0 0 chr4 96096467 96096491 -59533629 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1318 459 0 0 0 chr4 96096491 96096542 -59533578 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1318 16658 200 74 12 chr4 96096542 96097291 -59532829 - Lx2 LINE L1 -4376 1510 364 1 1318 1896 132 30 57 chr4 96098301 96098637 -59531483 - ORR1A2 LTR MaLR 0 327 1 1 1318 315 0 0 0 chr4 96098740 96098775 -59531345 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1318 35546 50 6 3 chr4 96098885 96105056 -59525064 - L1Md_F2 LINE L1 -2 6580 445 1 1318 493 159 83 18 chr4 96105502 96105611 -59524509 - RLTR22_Mur LTR ERVK -1619 229 114 1 1318 351 303 9 18 chr4 96106250 96106361 -59523759 + RMER10B LTR ERVL 247 356 -42 1 1318 281 256 0 21 chr4 96106411 96106518 -59523602 - RLTR28 LTR ERVL -195 286 186 1 1318 906 250 67 20 chr4 96106625 96106878 -59523242 - RLTR28B LTR ERVL -213 268 4 1 1318 11485 80 28 1 chr4 96106889 96108559 -59521561 - L1Md_F2 LINE L1 -209 5674 3960 1 1318 5773 73 53 10 chr4 96108559 96109366 -59520754 + L1Md_F2 LINE L1 5729 6570 -12 1 1318 387 0 0 0 chr4 96109390 96109433 -59520687 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1318 2356 293 37 22 chr4 96109556 96110651 -59519469 + RMER1B Other Other 15 1066 0 1 1318 32 75 0 0 chr4 96110955 96111022 -59519098 + AT_rich Low_complexity Low_complexity 1 67 0 1 1318 525 365 84 11 chr4 96112094 96112357 -59517763 - B4 SINE B4 -4 288 7 1 1318 1248 215 47 158 chr4 96113074 96113319 -59516801 + ORR1C2 LTR MaLR 3 194 -190 1 1318 282 56 0 0 chr4 96113319 96113355 -59516765 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1318 1248 215 47 158 chr4 96113355 96113534 -59516586 + ORR1C2 LTR MaLR 195 380 -4 1 1318 1644 106 0 0 chr4 96114668 96114903 -59515217 - Lx3_Mus LINE L1 -428 6581 6347 1 1318 2403 103 8 5 chr4 96114897 96115286 -59514834 + Lx3_Mus LINE L1 5964 6353 -656 1 1318 30247 106 15 10 chr4 96116884 96123254 -59506866 - L1_Mus2 LINE L1 -11 7000 611 1 1318 7100 177 22 2 chr4 96123256 96124720 -59505400 - L1_Mur2 LINE L1 -858 5019 3527 1 1318 30176 85 78 15 chr4 96124720 96130863 -59499257 - L1Md_F3 LINE L1 -14 6570 79 1 1318 3658 175 25 10 chr4 96130866 96130940 -59499180 - L1VL4 LINE L1 -365 3194 3127 1 1318 225 0 0 0 chr4 96130940 96130965 -59499155 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1318 3658 175 25 10 chr4 96130965 96131698 -59498422 - L1VL4 LINE L1 -433 3126 2375 1 1318 3573 58 0 4 chr4 96131708 96132158 -59497962 - L1_Mus1 LINE L1 -1 6566 6119 1 1318 2886 69 0 0 chr4 96132158 96132547 -59497573 - L1_Mus1 LINE L1 -577 5990 5602 1 1318 4541 114 22 3 chr4 96132538 96133902 -59496218 + L1Md_F LINE L1 537 1927 -3956 1 1318 6619 183 16 16 chr4 96133901 96134324 -59495796 - L1VL4 LINE L1 -1173 2386 1963 1 1318 257 48 0 45 chr4 96134324 96134368 -59495752 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1318 6619 178 16 13 chr4 96134368 96135567 -59494553 - L1VL4 LINE L1 -1597 1962 760 1 1318 189 0 0 0 chr4 96135567 96135588 -59494532 + (TTTTC)n Simple_repeat Simple_repeat 4 24 0 1 1318 1026 79 21 0 chr4 96135611 96135751 -59494369 - B1_Mm SINE Alu 0 147 5 1 1318 1021 199 0 0 chr4 96135751 96135972 -59494148 - L1VL2 LINE L1 -5558 777 557 1 1318 214 299 26 130 chr4 96137642 96137723 -59492397 - B2_Mm2 SINE B2 -4 191 80 1 1318 313 257 0 0 chr4 96137723 96137793 -59492327 - RSINE1 SINE B4 -41 124 55 1 1318 214 299 26 130 chr4 96137793 96137834 -59492286 - B2_Mm2 SINE B2 -4 79 20 1 1318 1302 187 104 0 chr4 96138965 96139243 -59490877 - RLTR11B LTR ERVK 0 453 147 1 1318 669 324 40 41 chr4 96139570 96139856 -59490264 + ORR1D2 LTR MaLR 9 293 -91 1 1318 1983 296 39 58 chr4 96139854 96140575 -59489545 + ORR1D2-int LTR MaLR 654 1360 -10 1 1318 565 327 38 51 chr4 96140594 96140829 -59489291 + ORR1D2 LTR MaLR 10 241 -129 1 1318 834 304 25 20 chr4 96140971 96141216 -59488904 + B4 SINE B4 2 247 -45 1 1318 743 280 59 31 chr4 96142318 96142639 -59487481 - Lx6 LINE L1 -26 7434 7105 1 1318 815 279 80 80 chr4 96142953 96142987 -59487133 + MT2A LTR ERVL 1 32 -501 1 1318 5397 110 24 56 chr4 96142987 96143905 -59486215 + RMER17D LTR ERVK 1 889 0 1 1318 815 281 85 80 chr4 96143905 96144246 -59485874 + MT2A LTR ERVL 33 524 -77 1 1318 501 47 0 0 chr4 96144247 96144311 -59485809 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1318 269 362 29 0 chr4 96144520 96144625 -59485495 + ORR1E LTR MaLR 3 110 -249 1 1318 255 292 114 9 chr4 96145255 96145369 -59484751 + MLT1D LTR MaLR 21 146 -359 1 1318 1519 102 12 37 chr4 96146657 96146946 -59483174 - L1_Mus3 LINE L1 0 6638 6386 1 1318 21437 174 18 4 chr4 96146947 96151819 -59478301 - L1VL4 LINE L1 -320 5563 627 1 1318 4256 65 0 0 chr4 96152091 96152631 -59477489 - L1Md_F2 LINE L1 -2 6580 6041 1 1318 14791 81 9 23 chr4 96152631 96155546 -59474574 - L1Md_F LINE L1 -2560 3323 452 1 1318 24 91 0 0 chr4 96155551 96155617 -59474503 + AT_rich Low_complexity Low_complexity 1 66 0 1 1318 45 0 0 0 chr4 96156424 96156469 -59473651 + AT_rich Low_complexity Low_complexity 1 45 0 1 1318 557 163 128 7 chr4 96156469 96156617 -59473503 - Lx3B LINE L1 -6 6967 6802 1 1318 952 106 78 19 chr4 96156617 96156771 -59473349 + RMER17A2 LTR ERVK 1 163 -743 1 1318 6645 154 20 6 chr4 96156775 96158565 -59471555 - Lx3B LINE L1 -167 6806 4998 1 1318 3922 137 4 12 chr4 96158563 96159243 -59470877 + Lx3C LINE L1 4320 4994 -892 1 1318 450 49 0 0 chr4 96159454 96159515 -59470605 + (A)n Simple_repeat Simple_repeat 1 61 0 1 1318 612 212 124 64 chr4 96159638 96159840 -59470280 + B3 SINE B2 3 216 0 1 1318 657 242 112 9 chr4 96160633 96160866 -59469254 + Lx9 LINE L1 7239 7495 -149 1 1318 5041 148 17 9 chr4 96160890 96161844 -59468276 - Lx3C LINE L1 -833 5053 4093 1 1318 4046 171 17 24 chr4 96161841 96162038 -59468082 + Lx3C LINE L1 5075 5282 -604 1 1318 267 31 0 0 chr4 96162038 96162070 -59468050 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1318 7331 165 22 20 chr4 96162070 96162633 -59467487 + Lx3C LINE L1 5283 5834 -52 1 1318 279 0 0 0 chr4 96162633 96162664 -59467456 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1318 7331 158 28 15 chr4 96162664 96163782 -59466338 + Lx3C LINE L1 5833 6976 0 1 1318 375 121 0 0 chr4 96164070 96164128 -59465992 + (CAT)n Simple_repeat Simple_repeat 2 59 0 1 1318 2690 226 27 11 chr4 96164133 96164790 -59465330 - RMER1B Other Other -4 1062 395 1 1318 5087 224 34 9 chr4 96164813 96165946 -59464174 + Lx5 LINE L1 5832 6993 -57 1 1318 4617 129 47 3 chr4 96166434 96167180 -59462940 + Lx3A LINE L1 6196 6974 -7 1 1318 1208 91 6 0 chr4 96167237 96167413 -59462707 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1 1318 218 330 35 86 chr4 96167591 96167707 -59462413 + L2b LINE L2 3265 3374 -1 1 1318 432 0 0 0 chr4 96168389 96168437 -59461683 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1318 432 0 0 0 chr4 96168498 96168546 -59461574 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1318 675 296 0 18 chr4 96170060 96170225 -59459895 + Lx5 LINE L1 6809 6970 -80 1 1318 281 257 0 0 chr4 96171587 96171657 -59458463 - URR1B DNA MER1_type -13 212 143 1 1318 3008 49 5 20 chr4 96172039 96172434 -59457686 - L1Md_F2 LINE L1 -3 6579 6191 1 1318 374 340 113 36 chr4 96172434 96172991 -59457129 + L1MDa LINE L1 1993 2597 -4036 1 1318 994 31 15 0 chr4 96173132 96173262 -59456858 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1318 207 0 0 0 chr4 96173471 96173494 -59456626 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1318 351 327 77 0 chr4 96173570 96173726 -59456394 + L1MDa LINE L1 3103 3270 -3267 1 1318 404 312 14 47 chr4 96174482 96174630 -59455490 + RMER1C Other Other 679 821 -521 1 1318 7997 39 0 0 chr4 96174647 96175883 -59454237 - L1Md_F2 LINE L1 0 6582 5347 1 1318 5630 75 1 11 chr4 96175885 96176724 -59453396 - L1_Mm LINE L1 -3478 2405 1575 1 1318 1723 324 50 18 chr4 96176719 96177461 -59452659 + RMER1C Other Other 572 1337 -5 1 1318 225 211 0 0 chr4 96177800 96177852 -59452268 + (TATG)n Simple_repeat Simple_repeat 2 53 0 1 1318 2953 61 42 0 chr4 96177869 96178247 -59451873 - MTA_Mm LTR MaLR 0 396 3 1 1318 643 137 16 0 chr4 96178253 96178377 -59451743 + (TATG)n Simple_repeat Simple_repeat 2 127 0 1 1318 479 264 7 73 chr4 96178774 96178925 -59451195 - B1_Mur2 SINE Alu -1 148 8 1 1318 882 54 0 0 chr4 96178940 96179052 -59451068 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 1 1318 3985 90 0 4 chr4 96179079 96179623 -59450497 - L1_Mus1 LINE L1 -1 6566 6025 1 1318 2650 72 0 0 chr4 96179623 96179985 -59450135 + L1_Mus1 LINE L1 5660 6021 -545 1 1318 397 192 19 16 chr4 96180079 96180206 -59449914 + ORR1E-int LTR MaLR 1290 1354 -16 1 1318 565 368 62 9 chr4 96180184 96180505 -59449615 + ORR1E LTR MaLR 11 348 -11 1 1318 210 270 10 29 chr4 96180520 96180623 -59449497 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 1 1318 292 209 88 15 chr4 96180784 96180852 -59449268 + B4 SINE B4 176 248 -44 1 1318 372 146 0 0 chr4 96181057 96181112 -59449008 - B2_Mm2 SINE B2 -94 101 47 1 1318 919 112 37 0 chr4 96181141 96181275 -59448845 - B2_Mm1t SINE B2 -14 179 41 1 1318 5921 34 0 3 chr4 96181356 96182060 -59448060 + L1Md_F3 LINE L1 5883 6584 0 1 1318 732 318 24 27 chr4 96182954 96183284 -59446836 - Lx6 LINE L1 -26 7434 7106 1 1318 1222 269 196 25 chr4 96183459 96184086 -59446034 + RMER1B Other Other 15 1062 -4 1 1318 251 304 72 7 chr4 96185061 96185200 -59444920 - L1MC4 LINE L1 -1130 6912 6765 1 1318 329 413 65 43 chr4 96185527 96185803 -59444317 - B4 SINE B4 0 292 11 2 1318 6028 122 25 17 chr4 96185863 96186865 -59443255 + Lx LINE L1 5640 6649 -5 2 1318 513 328 115 48 chr4 96188126 96188440 -59441680 + MLT1H LTR MaLR 36 370 -179 2 1318 1856 35 0 0 chr4 96189858 96190084 -59440036 + L1Md_A LINE L1 6357 6582 0 2 1318 389 390 5 44 chr4 96191283 96191490 -59438630 + MTEa LTR MaLR 68 264 -115 2 1318 209 333 80 66 chr4 96191731 96191882 -59438238 + MIRm SINE MIR 11 163 -113 2 1318 432 0 0 0 chr4 96191930 96191978 -59438142 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1318 522 0 0 0 chr4 96191978 96192035 -59438085 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1318 356 343 85 24 chr4 96193002 96193214 -59436906 - MLT1A0 LTR MaLR -45 320 96 2 1318 247 329 50 12 chr4 96193204 96193284 -59436836 - RSINE1 SINE B4 -26 139 57 2 1318 666 281 7 0 chr4 96193757 96193903 -59436217 + B1_Mus2 SINE Alu 1 147 0 2 1318 217 308 38 13 chr4 96194227 96194306 -59435814 - ID_B1 SINE B4 -53 171 91 2 1318 310 256 33 0 chr4 96194324 96194414 -59435706 - L1MB2 LINE L1 -51 6120 6028 2 1318 555 327 30 12 chr4 96194885 96195049 -59435071 + B4 SINE B4 2 168 -124 2 1318 207 0 0 0 chr4 96195103 96195126 -59434994 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1318 528 16 0 0 chr4 96195126 96195186 -59434934 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1318 208 128 0 49 chr4 96195324 96195365 -59434755 + A-rich Low_complexity Low_complexity 2 40 0 2 1318 204 340 94 21 chr4 96196599 96196695 -59433425 + MIR SINE MIR 44 146 -62 2 1318 503 364 72 26 chr4 96197171 96197476 -59432644 + ORR1E LTR MaLR 1 319 -40 2 1318 328 284 109 9 chr4 96197886 96197996 -59432124 + MLT1D LTR MaLR 26 146 -359 2 1318 1290 183 65 4 chr4 96200470 96200733 -59429387 + Lx4A LINE L1 6763 7041 -17 2 1318 27 0 0 0 chr4 96200736 96200763 -59429357 + AT_rich Low_complexity Low_complexity 1 27 0 2 1318 360 234 24 1 chr4 96200994 96201098 -59429022 + L1_Mur3 LINE L1 2251 2366 -3514 2 1318 291 28 0 0 chr4 96201159 96201195 -59428925 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1318 6022 109 40 5 chr4 96205119 96206060 -59424060 + Lx LINE L1 5664 6637 -17 2 164 29884 81 8 6 chr4 96206062 96211245 -59418875 + L1Md_F2 LINE L1 392 5586 -297 2 1319 7334 75 5 14 chr4 96211246 96212250 -59417870 + L1Md_F2 LINE L1 5588 6582 0 2 1319 628 331 91 72 chr4 96214545 96214589 -59415531 - B4 SINE B4 0 292 267 2 1319 414 94 0 0 chr4 96214589 96214653 -59415467 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1319 628 331 91 72 chr4 96214653 96214872 -59415248 - B4 SINE B4 -26 266 24 2 1319 403 242 83 21 chr4 96215204 96215461 -59414659 - MTD LTR MaLR -14 407 6 2 1319 308 360 78 10 chr4 96217056 96217261 -59412859 + L1MDb LINE L1 777 995 -5414 2 1319 1651 247 42 0 chr4 96217386 96217642 -59412478 + Lx6 LINE L1 7052 7318 -142 2 1319 323 0 48 0 chr4 96217642 96217684 -59412436 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1319 1651 247 42 0 chr4 96217684 96217812 -59412308 + Lx6 LINE L1 7319 7451 -9 2 1319 2136 188 0 0 chr4 96218639 96219017 -59411103 + Lx LINE L1 6275 6652 -2 2 1319 352 338 103 32 chr4 96219229 96219541 -59410579 + L1MDb LINE L1 2620 2953 -3453 2 1319 209 179 0 0 chr4 96220437 96220476 -59409644 + (CCCTG)n Simple_repeat Simple_repeat 5 43 0 2 1319 471 236 253 10 chr4 96220559 96220870 -59409250 + Lx9 LINE L1 7258 7644 0 2 1319 887 168 0 0 chr4 96220879 96221022 -59409098 + B1_Mur2 SINE Alu 1 143 -6 2 1319 501 62 0 0 chr4 96221025 96221090 -59409030 + (CAG)n Simple_repeat Simple_repeat 1 65 0 2 1319 297 0 0 0 chr4 96221493 96221526 -59408594 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1319 1107 58 7 0 chr4 96221526 96221664 -59408456 - B1_Mus1 SINE Alu -8 140 2 2 1319 464 123 24 47 chr4 96221665 96221750 -59408370 - RMER6C LTR ERVK -2 688 606 2 1319 22 56 0 0 chr4 96222130 96222166 -59407954 + AT_rich Low_complexity Low_complexity 1 36 0 2 1319 1673 204 101 90 chr4 96222439 96222729 -59407391 - RMER6C LTR ERVK -80 610 337 2 1319 465 19 0 0 chr4 96222729 96222783 -59407337 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1319 1673 204 101 90 chr4 96222783 96223095 -59407025 - RMER6C LTR ERVK -354 336 1 2 1319 441 110 0 0 chr4 96223095 96223177 -59406943 + (TATG)n Simple_repeat Simple_repeat 2 83 0 2 1319 3849 130 91 17 chr4 96223210 96223912 -59406208 - RMER6A LTR ERVK 0 756 3 2 1319 867 262 111 47 chr4 96224470 96225597 -59404523 + L1M2 LINE L1 3298 4624 -1516 2 1319 679 323 50 11 chr4 96225615 96226090 -59404030 + L1M2 LINE L1 4729 5222 -921 2 1319 317 296 46 7 chr4 96226154 96226307 -59403813 + L1M2 LINE L1 5308 5466 -831 2 1319 291 38 57 0 chr4 96226333 96226386 -59403734 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 2 1319 216 0 0 0 chr4 96226513 96226537 -59403583 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1319 368 299 10 132 chr4 96227194 96227398 -59402722 - RMER15 LTR ERVL -50 525 347 2 1319 330 203 7 15 chr4 96227490 96227625 -59402495 + CT-rich Low_complexity Low_complexity 2 135 0 2 1319 679 276 19 0 chr4 96227660 96227816 -59402304 + B3 SINE B2 1 159 -57 2 1319 387 0 0 0 chr4 96227911 96227954 -59402166 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1319 2453 228 97 52 chr4 96228086 96228992 -59401128 - RLTR42-int LTR ERVK -567 4955 4009 2 1319 427 295 0 0 chr4 96229063 96229192 -59400928 - RLTR42-int LTR ERVK -2547 2975 2847 2 1319 228 218 90 0 chr4 96229225 96229303 -59400817 - Lx5 LINE L1 0 7050 6966 2 1319 3093 176 34 85 chr4 96229322 96230181 -59399939 - RLTR42-int LTR ERVK -2838 2684 1870 2 1319 1716 248 37 18 chr4 96231286 96231796 -59398324 + L1_Mur3 LINE L1 285 804 -6908 2 1319 670 275 5 5 chr4 96231844 96232034 -59398086 + Lx9 LINE L1 6845 7034 -610 2 1319 236 196 99 145 chr4 96232278 96232409 -59397711 - LTRIS4 LTR ERV1 -257 250 126 2 1319 1149 81 0 0 chr4 96232782 96232930 -59397190 + B1_Mus1 SINE Alu 1 148 0 2 1319 296 46 29 58 chr4 96232936 96233005 -59397115 + (CAAA)n Simple_repeat Simple_repeat 1 67 0 2 1319 2350 106 23 45 chr4 96234222 96234618 -59395502 + Lx LINE L1 6265 6651 -3 2 1319 210 238 0 0 chr4 96237146 96237209 -59392911 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 1319 3161 256 40 25 chr4 96237350 96238228 -59391892 + Lx7 LINE L1 6515 7405 -291 2 1319 393 70 0 0 chr4 96238235 96238292 -59391828 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1319 243 61 0 0 chr4 96238327 96238360 -59391760 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1319 29 0 0 0 chr4 96238470 96238499 -59391621 + AT_rich Low_complexity Low_complexity 1 29 0 2 1319 202 367 22 0 chr4 96239601 96239691 -59390429 + L2b LINE L2 3065 3156 -219 2 1319 412 356 32 23 chr4 96241016 96241237 -59388883 - MLT1A0 LTR MaLR -16 349 127 2 1319 575 250 149 0 chr4 96242152 96242340 -59387780 + B3 SINE B2 1 216 0 2 1319 270 0 0 0 chr4 96242375 96242405 -59387715 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2 1319 1527 37 11 11 chr4 96242461 96242651 -59387469 - B2_Mm1a SINE B2 0 193 4 2 1319 21 0 0 0 chr4 96242786 96242807 -59387313 + AT_rich Low_complexity Low_complexity 1 21 0 2 1319 379 317 29 0 chr4 96242847 96242951 -59387169 + RSINE1 SINE B4 47 153 -12 2 1319 870 300 93 22 chr4 96243087 96243356 -59386764 + B4 SINE B4 5 292 0 2 1319 413 291 80 35 chr4 96245047 96245261 -59384859 + MTE2a LTR MaLR 127 372 -7 2 1319 286 266 49 74 chr4 96245737 96245859 -59384261 + MLT1D LTR MaLR 173 291 -214 2 1319 681 13 0 0 chr4 96246354 96246432 -59383688 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 1319 248 0 31 0 chr4 96246537 96246569 -59383551 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1319 615 308 0 59 chr4 96246758 96246927 -59383193 - B3 SINE B2 -57 159 1 2 1319 29 28 0 0 chr4 96247087 96247123 -59382997 + AT_rich Low_complexity Low_complexity 1 36 0 2 1319 440 289 87 53 chr4 96247146 96247164 -59382956 - B3A SINE B2 -38 160 149 2 1319 1298 147 47 108 chr4 96247164 96247507 -59382613 + RLTRETN_Mm LTR ERVK 1 322 0 2 1319 440 289 87 53 chr4 96247507 96247638 -59382482 - B3A SINE B2 -50 148 6 2 1319 306 342 8 0 chr4 96249597 96249717 -59380403 + L1M4 LINE L1 5648 5768 -410 2 1319 294 29 0 0 chr4 96249815 96249850 -59380270 + (CAA)n Simple_repeat Simple_repeat 1 35 0 2 1319 2480 163 58 54 chr4 96251215 96251754 -59378366 + RLTR20A LTR ERVK 1 541 0 2 1319 612 91 0 0 chr4 96252708 96252796 -59377324 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1319 1006 38 30 0 chr4 96253870 96254002 -59376118 - L1_Mus4 LINE L1 -854 5782 5647 2 1319 2758 114 10 5 chr4 96254002 96254417 -59375703 + L1_Mus4 LINE L1 6216 6632 -4 2 1319 562 159 28 0 chr4 96255465 96255572 -59374548 + URR1B DNA MER1_type 116 225 0 2 1319 26 30 0 0 chr4 96255846 96255879 -59374241 + AT_rich Low_complexity Low_complexity 1 33 0 2 1319 270 81 0 0 chr4 96256006 96256043 -59374077 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1319 564 337 101 95 chr4 96256172 96257162 -59372958 + L1MDa LINE L1 1593 2588 -4045 2 1319 189 0 0 0 chr4 96257481 96257502 -59372618 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2 1319 241 289 26 9 chr4 96257581 96257696 -59372424 + L1MDa LINE L1 3126 3242 -3295 2 1319 225 274 0 0 chr4 96259083 96259145 -59370975 - L1M1 LINE L1 -382 5918 5857 2 1319 9445 202 121 42 chr4 96259430 96263605 -59366515 - Lx6 LINE L1 -4 7456 2891 2 1319 1070 288 52 34 chr4 96263640 96264314 -59365806 - Lx6 LINE L1 -7047 681 17 2 1319 4316 84 7 7 chr4 96265223 96265819 -59364301 - L1Md_F2 LINE L1 -13 6569 5974 2 1319 17855 118 29 11 chr4 96266574 96270414 -59359706 + L1Md_F LINE L1 222 4131 -1752 2 1319 493 329 58 129 chr4 96271102 96271465 -59358655 - RLTR17 LTR ERVK -266 426 90 2 1319 21 0 0 0 chr4 96274216 96274237 -59355883 + AT_rich Low_complexity Low_complexity 1 21 0 2 1319 200 231 21 32 chr4 96274960 96275054 -59355066 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 2 1319 1612 238 61 10 chr4 96275428 96275819 -59354301 + MTD LTR MaLR 1 411 -8 2 1319 696 221 48 27 chr4 96275840 96276026 -59354094 + MTD-int LTR MaLR 27 216 -1042 2 1319 503 109 43 52 chr4 96276035 96276151 -59353969 - Lx3_Mus LINE L1 -881 6128 6014 2 1319 1525 123 11 4 chr4 96276148 96276410 -59353710 + Lx3_Mus LINE L1 6108 6371 -638 2 1319 913 121 8 156 chr4 96276416 96276660 -59353460 + Lx3_Mus LINE L1 6796 7003 -6 2 1319 2232 243 222 42 chr4 96276660 96277566 -59352554 + MTD-int LTR MaLR 190 1258 0 2 1319 1496 272 24 32 chr4 96277568 96277978 -59352142 + MTD LTR MaLR 3 409 -10 2 1319 17691 97 10 12 chr4 96278467 96281766 -59348354 - L1Md_A LINE L1 -2172 3711 422 2 1319 392 224 57 49 chr4 96285157 96285279 -59344841 + RMER17C-int LTR ERVK 2659 2781 -457 3 1319 239 217 101 108 chr4 96285380 96285509 -59344611 + MLT2C2 LTR ERVL 250 377 -87 3 1319 1149 223 22 4 chr4 96285670 96285900 -59344220 + RLTR28B LTR ERVL 1 234 -247 3 1319 852 350 74 17 chr4 96285906 96286444 -59343676 - Lx8 LINE L1 -228 7245 6677 3 1319 3041 216 39 15 chr4 96287051 96287738 -59342382 + RLTR25B LTR ERVK 150 853 -175 3 1319 501 66 11 21 chr4 96287798 96287891 -59342229 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1319 315 0 0 0 chr4 96288207 96288242 -59341878 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1319 330 45 0 0 chr4 96288242 96288286 -59341834 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1319 664 196 78 58 chr4 96288286 96288492 -59341628 + RLTR25B LTR ERVK 894 1103 0 3 1319 262 301 75 0 chr4 96288492 96288585 -59341535 + Lx7 LINE L1 6614 6713 -983 3 1319 2116 139 179 0 chr4 96288712 96289136 -59340984 + RLTR47_MM LTR ERV1 1 500 -32 3 1319 665 162 59 37 chr4 96289166 96289301 -59340819 + RLTR23 LTR ERV1 1 138 -292 3 1319 373 161 0 16 chr4 96289316 96289379 -59340741 + RLTR23 LTR ERV1 100 161 -269 3 1319 6948 125 13 14 chr4 96290219 96291387 -59338733 - Lx LINE L1 -4 6650 5484 3 1319 2440 154 5 11 chr4 96291385 96291819 -59338301 - L1_Mur2 LINE L1 -2017 3860 3430 3 1319 2126 82 45 6 chr4 96291816 96292146 -59337974 + MusHAL1 LINE L1 1865 2207 -505 3 1319 380 302 17 90 chr4 96292800 96292978 -59337142 + B2_Mm2 SINE B2 1 165 -30 3 1319 708 12 0 0 chr4 96293762 96293843 -59336277 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1319 2087 183 129 24 chr4 96293843 96294347 -59335773 + RMER16-int LTR ERVK 263 819 -4587 3 1319 2369 189 43 9 chr4 96294350 96294814 -59335306 + RMER16-int LTR ERVK 1079 1558 -3848 3 1319 845 295 45 37 chr4 96294827 96295204 -59334916 + SRV_MM-int LTR ERVK 3042 3421 -2746 3 1319 634 131 28 49 chr4 96295216 96295360 -59334760 - L1_Mus3 LINE L1 -7 6631 6491 3 1319 2042 136 12 9 chr4 96295365 96295707 -59334413 + L1_Mur1 LINE L1 2495 2837 -3049 3 1319 823 177 0 7 chr4 96296376 96296524 -59333596 + ORR1B1-int LTR MaLR 1817 1963 0 3 1319 1888 194 20 6 chr4 96296539 96296882 -59333238 + ORR1B1 LTR MaLR 47 394 0 3 1319 4146 90 15 9 chr4 96297647 96298253 -59331867 - L1_Mus2 LINE L1 -7 6631 6010 3 1319 1112 102 0 0 chr4 96298253 96298400 -59331720 - B1_Mus2 SINE Alu 0 147 1 3 1319 2886 215 61 63 chr4 96298400 96298717 -59331403 - L1_Mus2 LINE L1 -613 6025 5710 3 1319 23 0 0 0 chr4 96299404 96299427 -59330693 + AT_rich Low_complexity Low_complexity 1 23 0 3 1319 1767 219 72 76 chr4 96301306 96301512 -59328608 - RLTR18B LTR ERVK -3 509 302 3 1319 450 0 0 0 chr4 96301512 96301562 -59328558 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1319 1767 219 72 76 chr4 96301562 96301830 -59328290 - RLTR18B LTR ERVK -211 301 38 3 1319 1155 107 0 0 chr4 96302079 96302257 -59327863 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 1319 6771 73 5 0 chr4 96303457 96304352 -59325768 - L1_Mm LINE L1 -756 5127 4229 3 1319 459 91 0 57 chr4 96304337 96304407 -59325713 + L1Md_F2 LINE L1 5521 5586 -297 3 1319 7588 67 3 3 chr4 96304407 96305391 -59324729 + L1Md_F2 LINE L1 5587 6570 -12 3 1319 2998 181 25 20 chr4 96306013 96306572 -59323548 + RLTR12A LTR ERVK 1 562 -6 3 1319 618 356 3 45 chr4 96306581 96306872 -59323248 + RLTR18B LTR ERVK 32 310 -306 3 1319 689 284 60 23 chr4 96307048 96307264 -59322856 + RLTR18B LTR ERVK 283 506 -6 3 1319 1436 247 77 14 chr4 96307330 96307757 -59322363 + RLTR18-int LTR ERVK 170 623 -4738 3 1319 690 160 0 0 chr4 96309032 96309163 -59320957 + (TGG)n Simple_repeat Simple_repeat 3 133 0 3 1319 204 125 0 0 chr4 96309422 96309454 -59320666 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1319 270 81 0 0 chr4 96309647 96309684 -59320436 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1319 729 346 18 39 chr4 96310074 96310459 -59319661 + Lx8 LINE L1 6830 7206 -267 3 1319 32704 90 13 4 chr4 96310763 96316144 -59313976 - L1Md_F2 LINE L1 -15 6567 1132 3 1319 34458 69 8 4 chr4 96316166 96322348 -59307772 - L1Md_F2 LINE L1 -12 6570 362 3 1319 285 336 7 14 chr4 96322438 96322577 -59307543 + (TATATG)n Simple_repeat Simple_repeat 6 143 0 3 1319 348 24 0 0 chr4 96322591 96322632 -59307488 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1319 414 0 0 0 chr4 96322632 96322677 -59307443 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1319 360 0 0 0 chr4 96322743 96322783 -59307337 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1319 966 295 42 15 chr4 96323961 96324226 -59305894 + RMER1A Other Other 15 286 -744 3 1319 2023 266 42 49 chr4 96324210 96325159 -59304961 + RMER1B Other Other 1 1052 -14 3 1319 1065 293 57 23 chr4 96325766 96326115 -59304005 + MTEb LTR MaLR 14 374 -5 3 1319 1015 304 61 39 chr4 96326580 96326943 -59303177 + MTD LTR MaLR 49 419 0 3 1319 876 46 0 0 chr4 96327249 96327358 -59302762 + (TCC)n Simple_repeat Simple_repeat 2 110 0 3 1319 441 0 0 0 chr4 96327358 96327407 -59302713 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1319 387 323 89 61 chr4 96327930 96327966 -59302154 + Lx7 LINE L1 5605 5634 -2062 3 1319 1456 246 47 11 chr4 96327966 96328327 -59301793 - ORR1D1 LTR MaLR 0 374 1 3 1319 387 323 89 61 chr4 96328327 96328570 -59301550 + Lx7 LINE L1 5635 5892 -1804 3 1319 664 144 32 0 chr4 96328730 96328855 -59301265 - Lx2B LINE L1 0 7000 6872 3 1319 2433 85 153 5 chr4 96329275 96329453 -59300667 - BGLII LTR ERVK 0 421 229 3 1319 1001 93 0 7 chr4 96329453 96329605 -59300515 + (TTC)n Simple_repeat Simple_repeat 3 153 0 3 1319 2433 85 153 5 chr4 96329605 96329793 -59300327 - BGLII LTR ERVK -193 228 2 3 1319 1185 343 66 23 chr4 96331318 96331968 -59298152 - Lx8 LINE L1 -115 7358 6681 3 1319 330 273 24 24 chr4 96332161 96332290 -59297830 - ID4_ SINE ID -22 130 2 3 1319 929 314 53 13 chr4 96332304 96332338 -59297782 + Lx7 LINE L1 5403 5436 -444 3 1319 829 104 0 15 chr4 96332338 96332475 -59297645 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 3 1319 1082 270 63 34 chr4 96332475 96333033 -59297087 + Lx7 LINE L1 5437 6031 -281 3 1319 636 324 105 22 chr4 96333055 96333512 -59296608 + Lx7 LINE L1 6970 7464 -9 3 1319 12811 108 26 15 chr4 96333532 96336350 -59293770 + L1VL1 LINE L1 221 3078 -620 3 164 25851 80 4 19 chr4 96336349 96339536 -59290584 + L1Md_F2 LINE L1 462 3596 -2287 3 1320 7213 58 13 6 chr4 96339536 96340488 -59289632 - RLTR13A2 LTR ERVK 0 958 1 3 1320 25851 64 4 9 chr4 96340488 96341761 -59288359 + L1Md_F2 LINE L1 3597 4865 -1018 3 1320 576 29 0 0 chr4 96341763 96341831 -59288289 + L1Md_F2 LINE L1 5519 5586 -297 3 1320 7501 56 31 2 chr4 96341832 96342799 -59287321 + L1Md_F2 LINE L1 5588 6582 0 3 1320 411 137 122 47 chr4 96342799 96342906 -59287214 + RLTR11B LTR ERVK 336 450 -3 3 1320 259 277 133 41 chr4 96343386 96343484 -59286636 + B3 SINE B2 2 108 -108 3 1320 292 309 6 111 chr4 96343505 96343676 -59286444 - MTB LTR MaLR -247 153 1 3 1320 1317 197 13 5 chr4 96343996 96344270 -59285850 - RLTR11B LTR ERVK -237 290 4 3 1320 3022 81 83 0 chr4 96344375 96344833 -59285287 + L1_Mus3 LINE L1 5781 6276 -362 3 1320 953 26 0 0 chr4 96345092 96345207 -59284913 + L1Md_F2 LINE L1 5942 6056 -526 3 1320 227 294 142 58 chr4 96345257 96345412 -59284708 + RLTR17 LTR ERVK 399 566 -126 3 1320 344 332 82 71 chr4 96345509 96345778 -59284342 - RLTR17 LTR ERVK -305 387 116 3 1320 241 173 0 37 chr4 96345737 96345791 -59284329 + RLTR31_Mur LTR ERVK 502 553 0 3 1320 462 18 0 0 chr4 96345800 96345855 -59284265 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1320 425 247 34 51 chr4 96345855 96346030 -59284090 - L1_Mur3 LINE L1 -6469 1243 1072 3 1320 302 276 8 8 chr4 96346029 96346146 -59283974 - L1_Mur3 LINE L1 -6757 955 839 3 1320 356 252 46 18 chr4 96346516 96346625 -59283495 - L1_Mur3 LINE L1 -6897 815 704 3 1320 232 273 0 0 chr4 96346801 96346856 -59283264 - L1_Mur3 LINE L1 -6898 814 760 3 1320 1024 239 44 101 chr4 96346894 96347294 -59282826 - MTE2a LTR MaLR -3 371 1 3 1320 300 330 11 11 chr4 96347407 96347585 -59282535 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1320 693 130 37 0 chr4 96348380 96348542 -59281578 + (TCTA)n Simple_repeat Simple_repeat 3 170 0 3 1320 672 254 14 14 chr4 96348682 96348822 -59281298 - B1F1 SINE Alu 0 149 10 3 1320 305 379 43 8 chr4 96348718 96348835 -59281285 - B4 SINE B4 -90 202 82 3 1320 227 381 99 11 chr4 96348927 96349118 -59281002 + L2 LINE L2 2479 2686 -733 3 1320 606 51 0 0 chr4 96350608 96350686 -59279434 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 1320 403 153 0 111 chr4 96350941 96351022 -59279098 - ID4_ SINE ID -10 73 2 3 1320 438 20 0 0 chr4 96351063 96351114 -59279006 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3 1320 282 315 109 0 chr4 96351124 96351216 -59278904 - ID_B1 SINE B4 -16 208 107 3 1320 236 354 40 40 chr4 96351141 96351241 -59278879 - B1F SINE Alu -45 104 5 3 1320 195 42 0 0 chr4 96351698 96351722 -59278398 + (TTA)n Simple_repeat Simple_repeat 3 26 0 3 1320 968 308 55 4 chr4 96351727 96352001 -59278119 - B4A SINE B4 -3 289 2 3 1320 23 0 0 0 chr4 96352315 96352338 -59277782 + AT_rich Low_complexity Low_complexity 1 23 0 3 1320 432 296 79 29 chr4 96352352 96352491 -59277629 - RSINE1 SINE B4 -14 151 6 3 1320 2959 209 58 12 chr4 96352673 96353332 -59276788 - Lx5 LINE L1 0 7050 6362 3 1320 1637 189 173 30 chr4 96353330 96353793 -59276327 + Lx5 LINE L1 5849 6377 -673 3 1320 1542 48 0 16 chr4 96354826 96355017 -59275103 + B2_Mm1a SINE B2 3 190 -3 3 1320 244 200 36 48 chr4 96355060 96355144 -59274976 - L1MA7 LINE L1 0 6291 6209 3 1320 324 0 0 0 chr4 96355690 96355726 -59274394 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1320 231 310 19 25 chr4 96355863 96356025 -59274095 + (TA)n Simple_repeat Simple_repeat 1 161 0 3 1320 852 277 5 0 chr4 96356550 96356770 -59273350 + Lx8 LINE L1 6345 6565 -908 3 1320 225 366 58 29 chr4 96357061 96357165 -59272955 + L2 LINE L2 381 487 -2932 3 1320 286 262 0 0 chr4 96357575 96357636 -59272484 - Lx6 LINE L1 -1214 6246 6186 3 1320 313 289 95 34 chr4 96357639 96357818 -59272302 + L1_Mur3 LINE L1 370 559 -7169 3 1320 816 213 67 101 chr4 96357814 96358122 -59271998 + L1_Mur3 LINE L1 859 1171 -6557 3 1320 279 0 0 0 chr4 96358122 96358153 -59271967 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1320 1083 103 0 0 chr4 96358153 96358299 -59271821 - B1_Mm SINE Alu -1 146 1 3 1320 816 213 67 101 chr4 96358299 96358365 -59271755 + L1_Mur3 LINE L1 1172 1220 -6508 3 1320 5143 183 43 28 chr4 96358350 96359242 -59270878 + L1_Mur3 LINE L1 1153 2067 -3813 3 1320 201 94 0 0 chr4 96359242 96359274 -59270846 + (CAG)n Simple_repeat Simple_repeat 1 32 0 3 1320 5143 183 44 28 chr4 96359274 96359662 -59270458 + L1_Mur3 LINE L1 2068 2455 -3425 3 1320 255 61 0 0 chr4 96359671 96359704 -59270416 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1320 590 208 0 7 chr4 96359994 96360144 -59269976 + GA-rich Low_complexity Low_complexity 2 150 0 3 1320 249 366 167 20 chr4 96360230 96360428 -59269692 - MIRb SINE MIR -38 230 4 4 1320 252 77 0 0 chr4 96360736 96360775 -59269345 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1320 200 86 29 0 chr4 96362837 96362872 -59267248 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1320 190 304 177 44 chr4 96363618 96363821 -59266299 + L3 LINE CR1 4007 4236 -253 4 1320 190 331 32 70 chr4 96364209 96364365 -59265755 - MIRc SINE MIR -104 164 15 4 1320 195 382 44 34 chr4 96364945 96365151 -59264969 + L2b LINE L2 2919 3126 -249 4 1320 450 0 0 0 chr4 96365304 96365354 -59264766 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 4 1320 184 259 96 24 chr4 96365539 96365622 -59264498 + L2a LINE L2 3075 3163 -263 4 1320 908 279 101 39 chr4 96365694 96366030 -59264090 - ORR1E LTR MaLR 0 359 3 4 1320 315 155 31 134 chr4 96366041 96366138 -59263982 + U2 snRNA snRNA 1 87 -101 4 1320 1141 225 44 29 chr4 96366098 96366373 -59263747 - MTE-int LTR MaLR -104 1476 1198 4 1320 1317 289 43 91 chr4 96366382 96366990 -59263130 + MERVL_2A-int LTR ERVL 2877 3455 -2259 4 1320 1452 266 34 73 chr4 96366997 96367561 -59262559 + MERVL_2A-int LTR ERVL 4276 4817 -897 4 1320 1082 89 0 14 chr4 96367562 96367710 -59262410 + B1_Mm SINE Alu 2 147 0 4 1320 345 100 0 0 chr4 96367710 96367760 -59262360 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1320 1933 286 17 39 chr4 96367762 96368665 -59261455 + MERVL_2A-int LTR ERVL 4854 5757 0 4 1320 1347 291 17 104 chr4 96368665 96369134 -59260986 + MT2A LTR ERVL 1 428 -105 4 1320 619 294 91 10 chr4 96369384 96369583 -59260537 - B3 SINE B2 0 216 2 4 1320 437 328 137 32 chr4 96369648 96369991 -59260129 + MTEb LTR MaLR 1 379 0 4 1320 32 26 0 0 chr4 96370226 96370265 -59259855 + AT_rich Low_complexity Low_complexity 1 39 0 4 1320 216 175 0 0 chr4 96370428 96370468 -59259652 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 4 1320 741 85 0 0 chr4 96370477 96370583 -59259537 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1320 182 105 26 0 chr4 96370649 96370687 -59259433 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1320 302 212 249 4 chr4 96370999 96371233 -59258887 - L1MC LINE L1 -2312 3834 3538 4 1320 277 283 14 55 chr4 96371646 96371792 -59258328 - L1MA6 LINE L1 -48 6252 6113 4 1320 218 319 9 0 chr4 96372692 96372773 -59257347 + (TTAGGG)n Simple_repeat Simple_repeat 1 82 0 4 1320 243 61 0 0 chr4 96372773 96372806 -59257314 + (TTGGGG)n Simple_repeat Simple_repeat 5 37 0 4 1320 218 319 9 0 chr4 96372806 96372837 -59257283 + (TTAGGG)n Simple_repeat Simple_repeat 6 36 0 4 1320 476 284 43 1 chr4 96372837 96372995 -59257125 - MIRb SINE MIR -83 185 23 4 1320 471 78 0 0 chr4 96373088 96373152 -59256968 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1320 832 309 135 5 chr4 96373575 96373717 -59256403 - Lx8 LINE L1 -461 7012 6859 4 1320 1123 28 7 7 chr4 96373717 96373861 -59256259 + (GAA)n Simple_repeat Simple_repeat 1 144 0 4 1320 832 309 135 5 chr4 96373861 96374118 -59256002 - Lx8 LINE L1 -615 6858 6563 4 1320 210 290 160 65 chr4 96374437 96374621 -59255499 + MIRc SINE MIR 6 208 -60 4 1320 4414 6 0 0 chr4 96375061 96375546 -59254574 + L1Md_T LINE L1 6098 6582 0 4 1320 234 177 0 48 chr4 96375744 96375827 -59254293 + CT-rich Low_complexity Low_complexity 4 82 0 4 1320 209 33 33 0 chr4 96377047 96377077 -59253043 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 4 1320 4584 56 19 12 chr4 96377081 96377674 -59252446 - L1_Mus1 LINE L1 -1 6566 5970 4 1320 2936 40 3 0 chr4 96377674 96378049 -59252071 + L1_Mus1 LINE L1 5592 5967 -600 4 1320 402 21 0 0 chr4 96378516 96378563 -59251557 + (TTATA)n Simple_repeat Simple_repeat 2 48 0 4 1320 271 305 67 22 chr4 96378672 96378806 -59251314 + MIRc SINE MIR 32 171 -97 4 1320 190 355 63 24 chr4 96379310 96379437 -59250683 - L3 LINE CR1 -158 4331 4200 4 1320 23 54 0 0 chr4 96380405 96380442 -59249678 + AT_rich Low_complexity Low_complexity 1 37 0 4 1320 2589 228 81 3 chr4 96380765 96381482 -59248638 - Lx9 LINE L1 -11 7633 6861 4 1320 565 312 35 128 chr4 96381775 96382120 -59248000 + MLT1C LTR MaLR 147 459 -8 4 1320 227 281 161 34 chr4 96382153 96382271 -59247849 + B3 SINE B2 76 208 -8 4 1320 2466 231 79 32 chr4 96382293 96382420 -59247700 - Lx9 LINE L1 0 7644 7505 4 1320 291 28 0 0 chr4 96382420 96382456 -59247664 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1320 2466 231 79 32 chr4 96382456 96383140 -59246980 - Lx9 LINE L1 -140 7504 6795 4 1320 1037 238 22 7 chr4 96383131 96383406 -59246714 + L1_Rod LINE L1 2152 2430 -3417 4 1320 2138 215 52 42 chr4 96383406 96383901 -59246219 - RLTR16 LTR ERVK 0 505 6 4 1320 266 262 25 0 chr4 96383901 96383981 -59246139 + L1_Rod LINE L1 2421 2502 -3345 4 1320 288 127 0 0 chr4 96383986 96384041 -59246079 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1320 522 46 0 0 chr4 96384048 96384113 -59246007 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1320 327 235 12 12 chr4 96384153 96384239 -59245881 + L1_Rod LINE L1 2510 2595 -3252 4 1320 360 0 0 0 chr4 96384412 96384452 -59245668 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1320 1140 137 5 26 chr4 96384473 96384668 -59245452 - Lx3C LINE L1 -8 6968 6778 4 1320 372 111 0 0 chr4 96384759 96384822 -59245298 + (TATG)n Simple_repeat Simple_repeat 1 63 0 4 1320 293 290 42 58 chr4 96386566 96386716 -59243404 + MIRc SINE MIR 30 172 -90 4 1320 540 0 0 0 chr4 96387091 96387151 -59242969 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1320 540 286 30 52 chr4 96387659 96387891 -59242229 + MER31A LTR ERV1 251 477 -8 4 1320 693 195 6 16 chr4 96388017 96388333 -59241787 + (CA)n Simple_repeat Simple_repeat 1 312 0 4 1320 221 75 0 24 chr4 96388440 96388481 -59241639 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1320 278 312 25 0 chr4 96388560 96388640 -59241480 - MIRb SINE MIR -89 179 98 4 1320 396 0 0 0 chr4 96389883 96389927 -59240193 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1320 870 133 15 7 chr4 96389927 96390063 -59240057 - B1_Mur3 SINE Alu -7 142 6 4 1320 326 272 0 24 chr4 96390151 96390234 -59239886 + PB1D10 SINE Alu 33 113 -4 4 1320 240 274 32 0 chr4 96391560 96391622 -59238498 - MIRc SINE MIR -110 158 95 4 1320 261 339 38 3 chr4 96391887 96392016 -59238104 + MTE2a LTR MaLR 57 187 -192 4 1320 21 0 0 0 chr4 96394027 96394048 -59236072 + AT_rich Low_complexity Low_complexity 1 21 0 4 1320 21 57 0 0 chr4 96396473 96396508 -59233612 + AT_rich Low_complexity Low_complexity 1 35 0 4 1320 252 0 0 0 chr4 96397085 96397113 -59233007 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 4 1320 190 270 107 50 chr4 96398187 96398308 -59231812 - L2b LINE L2 -3 3372 3245 4 1320 378 0 0 0 chr4 96398352 96398394 -59231726 + (CATA)n Simple_repeat Simple_repeat 1 42 0 4 1320 244 386 8 30 chr4 96398933 96399064 -59231056 + MIR SINE MIR 2 129 -133 4 1320 555 220 7 54 chr4 96399113 96399129 -59230991 + ID_B1 SINE B4 83 224 0 4 1320 990 83 0 0 chr4 96399129 96399262 -59230858 + B1_Mus1 SINE Alu 16 148 0 4 1320 603 299 60 74 chr4 96399455 96399740 -59230380 - B4A SINE B4 -7 285 5 4 1320 1126 51 13 0 chr4 96399748 96399830 -59230290 + (TTC)n Simple_repeat Simple_repeat 1 84 0 4 1320 1392 56 0 0 chr4 96399830 96400008 -59230112 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1320 1126 51 13 0 chr4 96400008 96400081 -59230039 + (TTC)n Simple_repeat Simple_repeat 3 75 0 4 1320 5365 34 3 5 chr4 96400509 96401152 -59228968 - L1Md_F2 LINE L1 -1 6581 5940 4 1320 2998 23 20 0 chr4 96401179 96401533 -59228587 + L1Md_F2 LINE L1 5587 5947 -635 4 1320 237 310 57 57 chr4 96401569 96401675 -59228445 + MIRb SINE MIR 8 113 -155 4 1320 451 288 25 32 chr4 96402369 96402527 -59227593 + MER5B DNA MER1_type 17 173 -5 4 1320 209 312 47 94 chr4 96402749 96402919 -59227201 - L2c LINE L2 0 3387 3226 4 1320 450 0 0 0 chr4 96403523 96403573 -59226547 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1320 413 266 10 23 chr4 96403583 96403698 -59226422 - B3 SINE B2 -86 112 2 4 1320 284 372 49 49 chr4 96404352 96404657 -59225463 + MLT1C LTR MaLR 163 467 0 4 1320 1430 65 16 0 chr4 96405407 96405591 -59224529 + B2_Mm2 SINE B2 3 189 -6 4 1320 276 333 16 95 chr4 96405935 96406061 -59224059 + PB1D10 SINE Alu 1 116 -1 4 1320 940 316 25 16 chr4 96406910 96407228 -59222892 + Lx8 LINE L1 6873 7193 -280 4 1320 249 154 231 0 chr4 96407363 96407428 -59222692 + Lx8 LINE L1 7389 7468 -5 4 1320 310 290 81 22 chr4 96408136 96408267 -59221853 + B4 SINE B4 2 151 -14 4 1320 414 0 0 0 chr4 96408285 96408331 -59221789 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1320 216 0 0 0 chr4 96408331 96408354 -59221766 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1320 291 325 12 0 chr4 96408860 96408940 -59221180 + ID_B1 SINE B4 123 203 -21 4 1320 207 200 0 0 chr4 96408960 96408995 -59221125 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1320 2110 205 106 27 chr4 96409059 96409474 -59220646 + RLTR20B3 LTR ERVK 20 471 -106 4 1320 324 0 0 0 chr4 96409474 96409510 -59220610 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1320 2110 205 106 27 chr4 96409510 96409611 -59220509 + RLTR20B3 LTR ERVK 472 576 -1 4 1320 313 308 44 57 chr4 96409792 96410019 -59220101 - L1M6 LINE L1 -4826 1670 1447 4 1320 859 153 34 34 chr4 96410845 96411021 -59219099 - Lx2B LINE L1 -1 6999 6824 4 1320 303 296 131 54 chr4 96411708 96411876 -59218244 + MIR SINE MIR 72 252 -10 4 1320 24 32 0 0 chr4 96414025 96414056 -59216064 + AT_rich Low_complexity Low_complexity 1 31 0 4 1320 21 71 0 0 chr4 96414662 96414704 -59215416 + AT_rich Low_complexity Low_complexity 1 42 0 4 1320 643 283 40 0 chr4 96414704 96414856 -59215264 - RSINE1 SINE B4 -6 159 2 4 1320 260 328 38 99 chr4 96415087 96415258 -59214862 - MLT1A LTR MaLR -161 213 52 4 1320 4688 8 0 0 chr4 96415258 96415779 -59214341 + L1Md_T LINE L1 6062 6582 0 5 1320 260 328 38 99 chr4 96415779 96415820 -59214300 - MLT1A LTR MaLR -323 51 14 4 1320 1143 320 25 6 chr4 96416288 96416652 -59213468 - MTE2a LTR MaLR -8 371 1 5 1320 650 306 210 13 chr4 96416739 96417053 -59213067 + MER74A LTR ERVL 183 558 0 5 1320 218 304 43 21 chr4 96417059 96417153 -59212967 + BC1_Mm scRNA scRNA 9 104 -48 5 1320 360 0 0 0 chr4 96419083 96419123 -59210997 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1320 345 329 28 14 chr4 96419130 96419272 -59210848 - MIRb SINE MIR -18 250 107 5 1320 30 0 0 0 chr4 96419611 96419641 -59210479 + AT_rich Low_complexity Low_complexity 1 30 0 5 1320 21 0 0 0 chr4 96419756 96419777 -59210343 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 184 346 14 143 chr4 96419858 96420067 -59210053 + MIRb SINE MIR 60 241 -27 5 1320 708 12 0 0 chr4 96420554 96420635 -59209485 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 1320 193 196 56 56 chr4 96422060 96422114 -59208006 - L2a LINE L2 -5 3421 3368 5 1320 262 319 11 0 chr4 96422643 96422737 -59207383 - B1F2 SINE Alu -8 141 47 5 1320 390 21 0 0 chr4 96422967 96423014 -59207106 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1320 3034 64 0 3 chr4 96423512 96423888 -59206232 - L1_Mus1 LINE L1 -130 6437 6063 5 1320 1100 92 0 0 chr4 96423888 96424041 -59206079 + L1_Mus1 LINE L1 6414 6566 -1 5 1320 188 122 0 24 chr4 96424108 96424150 -59205970 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1320 558 0 0 0 chr4 96424377 96424439 -59205681 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1320 7637 111 29 35 chr4 96424937 96425920 -59204200 + Lx3C LINE L1 5756 6757 -219 5 1320 585 0 0 0 chr4 96425920 96425985 -59204135 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1320 7637 111 29 35 chr4 96425985 96426228 -59203892 + Lx3C LINE L1 6758 6973 -3 5 1320 22 0 0 0 chr4 96426229 96426251 -59203869 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 48 60 0 0 chr4 96426464 96426547 -59203573 + AT_rich Low_complexity Low_complexity 1 83 0 5 1320 893 260 29 14 chr4 96426547 96426754 -59203366 + B3 SINE B2 1 210 -6 5 1320 661 261 80 49 chr4 96426757 96426917 -59203203 + RCHARR1 DNA MER1_type 742 907 -67 5 1320 207 69 0 0 chr4 96426917 96426946 -59203174 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1320 661 261 80 49 chr4 96426946 96427011 -59203109 + RCHARR1 DNA MER1_type 908 973 -1 5 1320 551 331 74 18 chr4 96427241 96427404 -59202716 + ID_B1 SINE B4 1 172 -52 5 1320 243 264 0 40 chr4 96429567 96429642 -59200478 + A-rich Low_complexity Low_complexity 2 73 0 5 1320 255 179 0 0 chr4 96430919 96430986 -59199134 + (TATG)n Simple_repeat Simple_repeat 1 67 0 5 1320 315 0 0 0 chr4 96431309 96431344 -59198776 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1320 232 341 88 7 chr4 96431399 96431535 -59198585 + Kanga2_a DNA Tc2 139 285 -603 5 1320 787 229 6 11 chr4 96431572 96431753 -59198367 - L1_Rod LINE L1 -940 4907 4728 5 1320 399 98 0 0 chr4 96431756 96431817 -59198303 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1320 243 0 0 0 chr4 96432218 96432245 -59197875 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1320 21 0 0 0 chr4 96432645 96432666 -59197454 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 237 169 0 0 chr4 96432744 96432803 -59197317 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1320 305 333 46 62 chr4 96433652 96433847 -59196273 + MIR SINE MIR 48 239 -23 5 1320 207 0 0 0 chr4 96433904 96433927 -59196193 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1320 21 57 0 0 chr4 96434041 96434076 -59196044 + AT_rich Low_complexity Low_complexity 1 35 0 5 1320 795 267 44 0 chr4 96434153 96434333 -59195787 + ID_B1 SINE B4 12 199 -25 5 1320 265 244 0 23 chr4 96434349 96434479 -59195641 + GA-rich Low_complexity Low_complexity 2 128 0 5 1320 262 341 0 52 chr4 96434864 96434960 -59195160 + MIR SINE MIR 18 108 -100 5 1320 1398 280 73 17 chr4 96434997 96435516 -59194604 + Charlie20a DNA Charlie 52 599 -208 5 1320 1744 231 35 10 chr4 96435601 96435995 -59194125 + MTD LTR MaLR 1 404 -15 5 1320 230 0 33 0 chr4 96437024 96437054 -59193066 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1320 248 300 58 32 chr4 96438149 96438304 -59191816 + L1ME3A LINE L1 5948 6106 -67 5 1320 590 51 31 0 chr4 96438318 96438416 -59191704 + L1Md_F3 LINE L1 6470 6570 -14 5 1320 227 240 45 16 chr4 96438656 96438746 -59191374 - MIRc SINE MIR -68 200 102 5 1320 2233 40 4 7 chr4 96438853 96439133 -59190987 + L1Md_F3 LINE L1 6292 6570 -14 5 1320 357 47 31 15 chr4 96440438 96440503 -59189617 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 5 1320 217 215 123 25 chr4 96440820 96440901 -59189219 - L3 LINE CR1 -77 4412 4324 5 1320 492 346 83 34 chr4 96442021 96442204 -59187916 - Tigger11a DNA MER2_type -364 371 170 5 1320 1069 153 119 0 chr4 96442204 96442406 -59187714 + URR1A DNA MER1_type 1 226 0 5 1320 492 346 83 34 chr4 96442406 96442548 -59187572 - Tigger11a DNA MER2_type -566 169 30 5 1320 1190 67 11 11 chr4 96443452 96443632 -59186488 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1320 371 98 16 0 chr4 96443632 96443693 -59186427 + (TCC)n Simple_repeat Simple_repeat 3 64 0 5 1320 1394 263 77 8 chr4 96444235 96444599 -59185521 + MTC LTR MaLR 19 407 -14 5 1320 191 61 30 0 chr4 96444603 96444636 -59185484 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1320 286 323 85 4 chr4 96444748 96444984 -59185136 - L1M5 LINE L1 -607 5517 5263 5 1320 988 245 178 3 chr4 96445321 96445641 -59184479 + MTEa LTR MaLR 4 379 0 5 1320 722 262 120 0 chr4 96445786 96445969 -59184151 - B3 SINE B2 0 216 12 5 1320 266 328 125 26 chr4 96446179 96446411 -59183709 + L2 LINE L2 2692 2946 -473 5 1320 248 268 237 51 chr4 96449261 96449322 -59180798 + MLT1C LTR MaLR 2 62 -405 5 1320 252 0 0 0 chr4 96449322 96449350 -59180770 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1320 486 0 0 0 chr4 96449351 96449405 -59180715 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1320 248 268 237 51 chr4 96449405 96449518 -59180602 + MLT1C LTR MaLR 63 211 -256 5 1320 429 20 0 0 chr4 96452425 96452475 -59177645 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1320 300 253 26 26 chr4 96452482 96452559 -59177561 - RSINE1 SINE B4 -44 121 45 5 1320 188 307 52 83 chr4 96453014 96453110 -59177010 + L3 LINE CR1 123 215 -4274 5 1320 216 0 0 0 chr4 96453772 96453796 -59176324 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 5 1320 320 182 182 0 chr4 96453796 96453895 -59176225 + Lx LINE L1 6536 6652 -2 5 1320 283 258 0 16 chr4 96454084 96454147 -59175973 + BC1_Mm scRNA scRNA 5 66 -86 5 1320 706 258 67 116 chr4 96454091 96454315 -59175805 + ID_B1 SINE B4 12 224 0 5 1320 1026 187 13 27 chr4 96454652 96454877 -59175243 - URR1A DNA MER1_type -4 222 1 5 1320 195 42 0 0 chr4 96455377 96455401 -59174719 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1320 337 330 88 16 chr4 96456318 96456512 -59173608 - MIRb SINE MIR -21 247 40 5 1320 350 264 32 16 chr4 96457222 96457345 -59172775 + CT-rich Low_complexity Low_complexity 4 128 0 5 1320 759 296 162 41 chr4 96457514 96457908 -59172212 - MLT1C LTR MaLR -17 450 9 5 1320 706 189 36 43 chr4 96458694 96458832 -59171288 - B1_Mur1 SINE Alu -12 137 1 5 1320 238 83 0 0 chr4 96459793 96459829 -59170291 - B1_Mur4 SINE Alu -3 147 112 5 1320 413 213 13 0 chr4 96460791 96460866 -59169254 + RSINE1 SINE B4 46 121 -44 5 1320 255 103 0 0 chr4 96460869 96460908 -59169212 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1320 1129 33 26 7 chr4 96461668 96461822 -59168298 + L1Md_F3 LINE L1 6427 6583 -1 5 1320 859 303 60 45 chr4 96462603 96463000 -59167120 - BGLII_B LTR ERVK -29 412 10 5 1320 207 0 0 0 chr4 96463400 96463423 -59166697 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1320 228 255 0 19 chr4 96463423 96463475 -59166645 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1320 227 417 67 52 chr4 96463797 96464065 -59166055 + LTR88a LTR Gypsy 301 572 -244 5 1320 257 271 0 0 chr4 96464325 96464384 -59165736 - MER20B DNA MER1_type -612 171 113 5 1320 745 302 129 34 chr4 96464951 96465277 -59164843 - MTEa LTR MaLR -8 371 15 5 1320 182 323 81 0 chr4 96465535 96465597 -59164523 - MIR SINE MIR -163 99 33 5 1320 253 292 9 9 chr4 96465623 96465730 -59164390 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1320 483 320 116 4 chr4 96465880 96466147 -59163973 - MLT1B LTR MaLR 0 390 94 5 1320 604 231 19 24 chr4 96466870 96467053 -59163067 + L1MA4 LINE L1 5715 5938 -362 5 1320 1123 30 8 0 chr4 96467073 96467206 -59162914 + B1_Mus2 SINE Alu 2 135 -12 5 1320 477 0 0 0 chr4 96467207 96467260 -59162860 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1321 1961 155 49 5 chr4 96470004 96470374 -59159746 + Lx3A LINE L1 6548 6933 -48 5 1321 222 37 0 0 chr4 96470474 96470501 -59159619 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 1321 480 255 39 7 chr4 96470501 96470655 -59159465 - Lx5 LINE L1 -18 7032 6874 5 1321 426 256 43 21 chr4 96470705 96470845 -59159275 - Lx9 LINE L1 -380 7264 7122 5 1321 581 255 106 14 chr4 96470843 96471050 -59159070 + Lx9 LINE L1 6789 7014 -630 5 1321 238 300 24 36 chr4 96471536 96471619 -59158501 - B1_Mus1 SINE Alu -44 104 23 5 1321 447 19 0 0 chr4 96474851 96474903 -59155217 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1321 226 337 69 10 chr4 96474924 96475026 -59155094 - ID_B1 SINE B4 -4 220 113 5 1321 399 19 0 0 chr4 96475268 96475321 -59154799 - L1Md_F3 LINE L1 -14 6570 6518 5 1321 227 354 123 23 chr4 96475781 96476001 -59154119 - MIR SINE MIR -19 243 2 5 1321 1676 276 39 11 chr4 96476018 96476709 -59153411 - Lx6 LINE L1 -26 7434 6455 5 1321 3133 182 342 12 chr4 96476708 96476794 -59153326 - L1_Mur2 LINE L1 -1233 4653 4571 6 1321 3346 68 5 2 chr4 96476794 96477233 -59152887 - L1_Mus2 LINE L1 0 6566 6127 6 1321 3868 140 127 9 chr4 96477233 96478237 -59151883 - L1_Mur2 LINE L1 -1316 4570 3195 6 1321 396 0 0 0 chr4 96478238 96478282 -59151838 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 6 1321 272 27 27 0 chr4 96478284 96478321 -59151799 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1321 1049 106 0 0 chr4 96478334 96478475 -59151645 - B1_Mm SINE Alu -5 142 2 6 1321 4382 219 83 47 chr4 96478493 96479837 -59150283 + Lx4A LINE L1 5663 7055 -3 6 1321 21 0 0 0 chr4 96479837 96479858 -59150262 + AT_rich Low_complexity Low_complexity 1 21 0 6 1321 488 56 14 0 chr4 96479858 96479930 -59150190 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 1321 1127 244 66 36 chr4 96479930 96480402 -59149718 + Lx5 LINE L1 5748 6273 -1187 6 1321 1436 330 16 8 chr4 96480402 96481227 -59148893 + Lx5 LINE L1 6453 7032 -18 6 1321 238 236 0 18 chr4 96481267 96481323 -59148797 + MER102b DNA MER1_type 94 148 -193 6 1321 229 361 36 0 chr4 96481885 96481968 -59148152 - RMER15 LTR ERVL -117 458 373 6 1321 306 351 83 4 chr4 96482032 96482157 -59147963 - Lx8 LINE L1 -294 7179 7051 6 1321 446 0 19 0 chr4 96482157 96482211 -59147909 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1321 306 351 83 4 chr4 96482211 96482362 -59147758 - Lx8 LINE L1 -423 7050 6882 6 1321 10516 112 11 3 chr4 96483021 96483394 -59146726 - L1_Mm LINE L1 -2490 3393 3015 6 1321 432 0 0 0 chr4 96483394 96483442 -59146678 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1321 10516 112 11 3 chr4 96483442 96484768 -59145352 - L1_Mm LINE L1 -2869 3014 1681 6 1321 6832 91 5 1 chr4 96484767 96485787 -59144333 + L1_Mus2 LINE L1 5539 6562 -4 6 1321 270 273 33 33 chr4 96485845 96485936 -59144184 + MLT1A1 LTR MaLR 314 404 -4 6 1321 506 169 10 10 chr4 96486058 96486154 -59143966 - RMER5 LTR ERV1 -109 425 330 6 1321 1079 192 0 9 chr4 96486155 96486370 -59143750 - Lx5 LINE L1 -360 6690 6478 6 1321 7736 43 6 1 chr4 96486399 96487696 -59142424 - L1Md_F3 LINE L1 -14 6570 5267 6 1321 22 35 0 0 chr4 96488486 96488515 -59141605 + AT_rich Low_complexity Low_complexity 1 29 0 6 1321 226 231 53 53 chr4 96488608 96488722 -59141398 - L1M4 LINE L1 -2057 4089 3976 6 1321 532 279 64 7 chr4 96488871 96489012 -59141108 - ID_B1 SINE B4 -9 215 67 6 1321 1324 238 93 33 chr4 96489161 96489674 -59140446 + RMER19C LTR ERVK 157 668 -234 6 1321 395 102 0 28 chr4 96489932 96490003 -59140117 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1321 562 199 53 112 chr4 96490391 96490578 -59139542 - RLTR30 LTR ERV1 -2 377 202 6 1321 575 308 11 28 chr4 96490650 96490827 -59139293 - RLTR30 LTR ERV1 -194 185 12 6 1321 1851 205 28 52 chr4 96491250 96491348 -59138772 + MTD LTR MaLR 1 91 -328 6 1321 1211 36 0 0 chr4 96491348 96491487 -59138633 + B1_Mm SINE Alu 1 139 -8 6 1321 186 43 0 0 chr4 96491487 96491510 -59138610 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1321 189 0 0 0 chr4 96491510 96491530 -59138590 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1321 1851 205 28 52 chr4 96491530 96491851 -59138269 + MTD LTR MaLR 92 410 -9 6 1321 184 336 111 9 chr4 96494606 96494714 -59135406 - MIRb SINE MIR -53 215 97 6 1321 284 377 9 0 chr4 96494857 96494963 -59135157 - L3 LINE CR1 -54 4435 4329 6 1321 180 0 0 0 chr4 96495210 96495230 -59134890 + (CATG)n Simple_repeat Simple_repeat 2 21 0 6 1321 1652 220 28 0 chr4 96495995 96496322 -59133798 + ORR1B1 LTR MaLR 1 336 -58 6 1321 198 128 0 0 chr4 96496331 96496370 -59133750 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1321 2942 75 0 22 chr4 96496387 96496796 -59133324 - L1Md_F2 LINE L1 -13 6569 6170 6 1321 6834 64 4 1 chr4 96496796 96497990 -59132130 + L1Md_F2 LINE L1 4956 6150 -432 6 1321 252 170 21 0 chr4 96497990 96498037 -59132083 + ORR1B1 LTR MaLR 340 387 -7 6 1321 683 274 63 29 chr4 96498438 96498567 -59131553 + B3 SINE B2 2 140 -76 6 1321 1128 15 0 0 chr4 96498567 96498697 -59131423 + (TTC)n Simple_repeat Simple_repeat 1 130 0 6 1321 1097 67 0 0 chr4 96498698 96498832 -59131288 - B1_Mm SINE Alu -12 135 2 6 1321 683 274 63 29 chr4 96498832 96498907 -59131213 + B3 SINE B2 141 215 -1 6 1321 389 346 0 56 chr4 96499351 96499513 -59130607 - B3A SINE B2 -4 194 42 6 1321 316 39 17 150 chr4 96500003 96500063 -59130057 + B1_Mm SINE Alu 96 147 0 1 1321 22 0 0 0 chr4 96500063 96500085 -59130035 + AT_rich Low_complexity Low_complexity 1 22 0 2 1321 215 109 65 0 chr4 96500351 96500397 -59129723 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 3 1321 264 59 0 0 chr4 96500455 96500489 -59129631 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 4 1321 294 384 0 0 chr4 96501045 96501144 -59128976 + PB1D10 SINE Alu 3 101 -16 5 1321 797 112 15 0 chr4 96501329 96501463 -59128657 + L1_Mus3 LINE L1 6495 6630 -8 6 1321 290 272 88 0 chr4 96501799 96501924 -59128196 + L1MB8 LINE L1 5850 5985 -193 7 1321 228 297 81 0 chr4 96502461 96502535 -59127585 - ID2 SINE ID 0 83 4 8 1321 1263 316 68 19 chr4 96504612 96505244 -59124876 - Lx8 LINE L1 -187 7286 6624 9 1321 2003 197 18 48 chr4 96505249 96505359 -59124761 + MTC LTR MaLR 5 105 -316 1 1321 998 58 80 0 chr4 96505359 96505496 -59124624 - B1_Mus1 SINE Alu 0 148 1 1 1321 2003 197 18 48 chr4 96505496 96505780 -59124340 + MTC LTR MaLR 106 387 -34 1 1321 1179 278 67 10 chr4 96505816 96506045 -59124075 + MTD LTR MaLR 105 345 -74 1 1321 3866 40 2 25 chr4 96506045 96506531 -59123589 + L1Md_F2 LINE L1 6108 6582 0 1 1321 1179 278 67 10 chr4 96506531 96506599 -59123521 + MTD LTR MaLR 346 419 0 1 1321 471 18 0 0 chr4 96506980 96507036 -59123084 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1321 335 23 23 0 chr4 96507370 96507414 -59122706 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1321 708 324 17 24 chr4 96507475 96507763 -59122357 - B4 SINE B4 -3 289 4 1 1321 292 291 47 16 chr4 96508192 96508321 -59121799 + CT-rich Low_complexity Low_complexity 3 135 0 1 1321 239 80 60 0 chr4 96508637 96508687 -59121433 - Lx6 LINE L1 -12 7448 7396 1 1321 561 261 72 5 chr4 96508671 96508864 -59121256 + Lx6 LINE L1 7217 7422 -38 1 1321 25 0 0 0 chr4 96509250 96509275 -59120845 + AT_rich Low_complexity Low_complexity 1 25 0 2 1321 222 37 0 0 chr4 96509356 96509383 -59120737 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1321 971 326 35 14 chr4 96509967 96510250 -59119870 - B4A SINE B4 0 292 4 2 1321 207 0 0 0 chr4 96510253 96510276 -59119844 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1321 327 221 167 44 chr4 96510919 96511009 -59119111 + PB1 SINE Alu 27 127 0 2 1321 180 0 0 0 chr4 96511556 96511576 -59118544 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1321 7651 104 13 3 chr4 96512963 96514879 -59115241 - L1Md_A LINE L1 0 6566 4630 2 1321 31582 14 0 0 chr4 96514858 96519374 -59110746 - L1Md_A LINE L1 -1 6581 2067 2 1321 6592 179 32 3 chr4 96519368 96521118 -59109002 + Lx4A LINE L1 5235 7054 -4 2 1321 872 283 5 0 chr4 96522235 96522447 -59107673 + B3 SINE B2 4 216 0 2 1321 199 161 36 0 chr4 96522492 96522548 -59107572 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1321 472 68 0 27 chr4 96523921 96523996 -59106124 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1321 524 272 158 0 chr4 96526975 96527229 -59102891 - MER113 DNA MER1_type -113 408 115 3 1321 554 251 110 6 chr4 96527832 96527996 -59102124 + RMER30 DNA MER1_type 16 196 -6 3 1321 633 220 0 0 chr4 96528275 96528393 -59101727 + B1_Mur4 SINE Alu 1 118 -32 3 1321 31665 73 10 24 chr4 96529377 96533056 -59097064 - L1Md_F2 LINE L1 0 6582 2901 3 1321 8223 38 1 8 chr4 96533056 96534059 -59096061 + L1Md_F2 LINE L1 5587 6582 0 3 1321 31665 75 9 32 chr4 96534059 96534135 -59095985 - L1_Mm LINE L1 -2983 2900 2900 3 1321 3114 75 33 2 chr4 96534135 96534563 -59095557 + L1_Mus2 LINE L1 6125 6565 -1 3 1321 31665 98 9 39 chr4 96534563 96536898 -59093222 - L1Md_F2 LINE L1 -2983 2900 631 3 1321 2985 210 196 15 chr4 96538082 96538942 -59091178 - Lx5 LINE L1 -3 7047 6032 3 1321 1857 148 19 0 chr4 96538943 96539268 -59090852 + Lx5 LINE L1 5647 5977 -1073 3 1321 232 318 40 0 chr4 96539798 96539916 -59090204 - MIRc SINE MIR -26 242 114 3 1321 265 326 59 22 chr4 96540346 96540481 -59089639 + MIRb SINE MIR 123 262 -6 4 1321 528 16 0 0 chr4 96540824 96540885 -59089235 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1321 284 311 52 39 chr4 96542562 96542716 -59087404 + MIRb SINE MIR 40 195 -73 4 1321 197 300 51 68 chr4 96544082 96544200 -59085920 - L3 LINE CR1 -3310 1179 1064 4 1321 810 263 54 0 chr4 96544290 96544476 -59085644 + B3 SINE B2 9 204 -12 4 1321 186 269 57 43 chr4 96544662 96544732 -59085388 - MIRb SINE MIR -196 72 2 4 1321 201 360 43 33 chr4 96545695 96545787 -59084333 + L2c LINE L2 3086 3178 -209 4 1321 439 318 65 90 chr4 96546103 96546243 -59083877 - RMER13A LTR ERVK -1 859 720 4 1321 1180 68 0 0 chr4 96546243 96546389 -59083731 + B1_Mus2 SINE Alu 2 147 0 4 1321 439 318 65 90 chr4 96546389 96546538 -59083582 - RMER13A LTR ERVK -141 719 577 4 1321 1213 239 73 35 chr4 96546515 96546858 -59083262 - RMER13A LTR ERVK -153 707 352 4 1321 994 82 0 70 chr4 96546858 96547015 -59083105 - L1_Mus2 LINE L1 -409 6157 6012 4 1321 2451 83 26 80 chr4 96547015 96547405 -59082715 + L1_Mus2 LINE L1 6197 6565 -1 4 1321 669 25 0 0 chr4 96547421 96547500 -59082620 + (GA)n Simple_repeat Simple_repeat 1 79 0 5 1321 454 205 118 17 chr4 96547512 96547631 -59082489 - RMER13A LTR ERVK -496 364 234 4 1321 504 235 25 34 chr4 96547606 96547725 -59082395 - RMER13A LTR ERVK -728 132 15 4 1321 185 435 16 0 chr4 96548014 96548138 -59081982 + MIRb SINE MIR 27 152 -116 5 1321 1124 297 71 7 chr4 96548205 96548612 -59081508 + Lx8 LINE L1 6277 6709 -764 5 1321 1014 303 93 27 chr4 96548628 96549154 -59080966 + Lx8 LINE L1 6831 7391 -82 5 1321 2139 286 125 13 chr4 96549352 96549384 -59080736 - Lx8 LINE L1 -101 7372 7335 5 1321 216 0 0 0 chr4 96549384 96549408 -59080712 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1321 2139 286 125 13 chr4 96549408 96549925 -59080195 - Lx8 LINE L1 -139 7334 6748 5 1321 1816 176 65 3 chr4 96549925 96550296 -59079824 + ORR1B1 LTR MaLR 1 394 0 5 1321 2139 286 125 13 chr4 96550296 96550671 -59079449 - Lx8 LINE L1 -726 6747 6344 5 1321 299 300 36 51 chr4 96551742 96551879 -59078241 + RMER15 LTR ERVL 435 569 -6 5 1321 4793 140 79 0 chr4 96552811 96553606 -59076514 - Lx2 LINE L1 -1 6996 6139 5 1321 3583 124 8 2 chr4 96553606 96554421 -59075699 + Lx2 LINE L1 5322 6144 -853 5 1321 4713 60 10 0 chr4 96554466 96555065 -59075055 - L1Md_F2 LINE L1 -2 6580 5976 5 1321 28 0 0 0 chr4 96555383 96555411 -59074709 + AT_rich Low_complexity Low_complexity 1 28 0 5 1321 300 337 122 16 chr4 96556302 96556555 -59073565 + L2 LINE L2 2677 2956 -463 6 1321 500 303 18 47 chr4 96556634 96556817 -59073303 + RMER20B LTR ERVK 1 172 -344 6 1321 249 57 0 0 chr4 96556926 96556961 -59073159 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1321 765 290 93 4 chr4 96556964 96557210 -59072910 + RMER20B LTR ERVK 147 414 -213 6 1321 25 31 0 0 chr4 96558361 96558393 -59071727 + AT_rich Low_complexity Low_complexity 1 32 0 6 1321 4479 105 24 0 chr4 96558773 96559432 -59070688 + L1_Mus3 LINE L1 5960 6634 -4 6 1321 246 32 0 0 chr4 96559496 96559527 -59070593 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 1321 1007 24 8 0 chr4 96559703 96559829 -59070291 + (TC)n Simple_repeat Simple_repeat 2 128 0 6 1321 4333 68 27 40 chr4 96560047 96560680 -59069440 - L1Md_F2 LINE L1 -9 6573 5949 6 1321 297 326 43 21 chr4 96560764 96560858 -59069262 + MIR SINE MIR 15 110 -152 6 1321 215 356 44 15 chr4 96560996 96561133 -59068987 + MIR SINE MIR 40 180 -82 6 1321 22 0 0 0 chr4 96561705 96561727 -59068393 + AT_rich Low_complexity Low_complexity 1 22 0 7 1321 216 195 0 24 chr4 96561828 96561870 -59068250 + GA-rich Low_complexity Low_complexity 4 44 0 7 1321 287 289 12 0 chr4 96562916 96562999 -59067121 - MER5A DNA MER1_type -25 164 81 7 1321 1930 205 7 39 chr4 96562989 96563405 -59066715 - MTD LTR MaLR -4 415 13 7 1321 234 139 27 14 chr4 96563405 96563478 -59066642 + A-rich Low_complexity Low_complexity 6 79 0 7 1321 26 0 0 0 chr4 96564070 96564096 -59066024 + AT_rich Low_complexity Low_complexity 1 26 0 7 1321 268 324 137 28 chr4 96564290 96564538 -59065582 + Lx8 LINE L1 7193 7467 -6 7 1321 327 49 0 0 chr4 96564972 96565013 -59065107 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1321 219 313 69 20 chr4 96565224 96565325 -59064795 - MIRb SINE MIR -42 226 121 7 1321 1262 88 22 6 chr4 96567297 96567479 -59062641 + B2_Mm2 SINE B2 8 192 -3 7 1321 434 308 147 26 chr4 96567581 96567791 -59062329 - MLT2B1 LTR ERVL -313 241 12 8 1321 2023 196 2 30 chr4 96568259 96568665 -59061455 - Lx2B LINE L1 -4 6996 6602 8 1321 571 158 53 0 chr4 96568702 96568816 -59061304 + Lx2B LINE L1 6359 6478 -522 8 1321 493 270 77 0 chr4 96569301 96569549 -59060571 + L1MC LINE L1 2959 3225 -2921 8 1321 2248 190 115 10 chr4 96569754 96569984 -59060136 - RLTR31_Mm LTR ERVK -2 559 297 8 1321 949 103 7 0 chr4 96569984 96570130 -59059990 + L1Md_F2 LINE L1 6425 6571 -11 8 1321 2248 190 115 10 chr4 96570130 96570405 -59059715 - RLTR31_Mm LTR ERVK -265 296 2 8 1321 576 74 0 9 chr4 96570968 96571057 -59059063 + B1_Mus2 SINE Alu 35 145 -2 8 1321 221 53 53 0 chr4 96571058 96571096 -59059024 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 8 1321 751 87 0 8 chr4 96571171 96571298 -59058822 + L1_Mus4 LINE L1 6510 6635 -1 8 1321 1025 277 36 61 chr4 96571306 96571882 -59058238 + L1_Mur3 LINE L1 1207 1768 -4112 8 1321 6653 208 67 28 chr4 96572089 96574104 -59056016 + Lx5 LINE L1 4933 7048 -2 9 1321 1741 312 41 34 chr4 96574164 96575209 -59054911 + L1_Mur3 LINE L1 1767 2819 -3061 8 1321 2253 102 12 3 chr4 96575209 96575533 -59054587 - ORR1A2 LTR MaLR 0 327 1 9 1321 1741 312 41 34 chr4 96575533 96575575 -59054545 + L1_Mur3 LINE L1 2820 2862 -3018 8 1321 325 224 186 26 chr4 96575589 96575745 -59054375 + L1_Mur3 LINE L1 4131 4311 -1569 8 1321 968 233 29 68 chr4 96575770 96576051 -59054069 + Lx9 LINE L1 6996 7265 -379 9 1321 728 262 35 67 chr4 96576155 96576499 -59053621 + Lx9 LINE L1 7312 7644 0 9 1321 880 309 121 35 chr4 96576514 96577402 -59052718 + L1M2 LINE L1 4355 5318 -825 9 1321 612 349 49 53 chr4 96577489 96577752 -59052368 + ORR1E LTR MaLR 47 308 -51 9 1321 586 303 5 67 chr4 96577757 96577966 -59052154 - B3A SINE B2 -2 196 1 9 1321 353 238 70 26 chr4 96578083 96578194 -59051926 + MTD LTR MaLR 6 131 -263 9 1321 6975 92 19 9 chr4 96578194 96578576 -59051544 + L1_Mus3 LINE L1 5634 6029 -609 9 1321 4068 156 49 14 chr4 96578576 96579358 -59050762 - RMER17D2 LTR ERVK 0 809 1 9 1321 6975 92 19 9 chr4 96579358 96579964 -59050156 + L1_Mus3 LINE L1 6030 6632 -6 9 1321 9600 165 24 14 chr4 96580186 96582889 -59047231 + Lx4B LINE L1 4101 6835 -223 9 1321 2852 263 58 60 chr4 96582890 96583906 -59046214 + RLTR25B LTR ERVK 8 1021 -7 1 1321 965 179 31 22 chr4 96583910 96584133 -59045987 + Lx4B LINE L1 6830 7054 -4 9 1321 548 289 168 49 chr4 96584215 96584702 -59045418 + L1MC LINE L1 3591 4135 -2011 1 1321 661 274 20 25 chr4 96585144 96585467 -59044653 + L1MC LINE L1 4142 4466 -1680 1 1321 1723 132 9 70 chr4 96585475 96585818 -59044302 + RLTRETN_Mm LTR ERVK 1 322 0 1 1321 22 56 0 0 chr4 96585889 96585925 -59044195 + AT_rich Low_complexity Low_complexity 1 36 0 1 1321 242 261 29 0 chr4 96585982 96586051 -59044069 + L1MC LINE L1 5112 5182 -964 1 1321 415 253 48 32 chr4 96586099 96586287 -59043833 + L1MC LINE L1 5301 5491 -842 1 1321 25 65 0 0 chr4 96586360 96586406 -59043714 + AT_rich Low_complexity Low_complexity 1 46 0 1 1321 375 113 0 0 chr4 96586663 96586734 -59043386 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1321 423 253 10 0 chr4 96586792 96586891 -59043229 + MTD LTR MaLR 249 352 -69 9 1321 481 301 30 127 chr4 96587116 96587352 -59042768 - B3 SINE B2 -3 213 1 1 1321 5630 216 44 21 chr4 96587671 96588916 -59041204 - ORR1D1-int LTR MaLR -96 1274 1 1 1321 807 209 20 7 chr4 96588950 96589121 -59040999 - ORR1D1 LTR MaLR -57 327 151 1 1321 319 212 17 17 chr4 96589298 96589413 -59040707 + (CATATA)n Simple_repeat Simple_repeat 6 120 0 1 1321 4067 38 46 2 chr4 96589614 96590116 -59040004 + L1Md_F3 LINE L1 6050 6573 -11 1 1321 2410 144 55 9 chr4 96591309 96591749 -59038371 + Lx3C LINE L1 6506 6965 -11 1 1321 267 190 0 0 chr4 96591752 96591810 -59038310 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1 1321 285 29 0 0 chr4 96592117 96592151 -59037969 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1321 248 0 31 0 chr4 96592152 96592184 -59037936 + (CCA)n Simple_repeat Simple_repeat 3 35 0 1 1321 246 105 0 0 chr4 96592344 96592382 -59037738 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1321 1054 82 7 39 chr4 96592382 96592535 -59037585 - B1_Mus1 SINE Alu 0 148 1 1 1321 701 285 100 33 chr4 96592607 96593147 -59036973 - L1MDa LINE L1 -3219 3318 2743 1 1321 558 294 5 43 chr4 96593165 96593353 -59036767 + Lx6 LINE L1 7253 7433 -27 1 1321 595 165 24 0 chr4 96593398 96593525 -59036595 + CT-rich Low_complexity Low_complexity 4 133 0 1 1321 8864 151 11 27 chr4 96593549 96596075 -59034045 - Lx2 LINE L1 -8 6989 4517 1 1321 2020 110 10 0 chr4 96596062 96596371 -59033749 - L1VL4 LINE L1 -981 2578 2267 1 1321 4317 135 36 87 chr4 96596370 96596849 -59033271 + L1VL2 LINE L1 100 533 -5802 1 1321 1165 48 14 0 chr4 96596849 96596996 -59033124 - B1_Mur4 SINE Alu 0 150 2 1 1321 4317 135 36 87 chr4 96596996 96597367 -59032753 + L1VL2 LINE L1 534 907 -5428 1 1321 3846 135 19 15 chr4 96597364 96598463 -59031657 - L1VL4 LINE L1 -2230 1329 226 1 1321 311 281 68 28 chr4 96598485 96598661 -59031459 - L1MDa LINE L1 -3825 2712 2530 1 1321 220 202 32 53 chr4 96598685 96598779 -59031341 + T-rich Low_complexity Low_complexity 4 95 0 1 1321 464 298 16 48 chr4 96599183 96599370 -59030750 - L1MDa LINE L1 -4636 1997 1817 1 165 453 318 170 15 chr4 96599731 96600255 -59029865 - L1MDa LINE L1 -5036 1597 993 1 1322 457 320 40 28 chr4 96600860 96601037 -59029083 - L1MDa LINE L1 -6307 326 148 1 1322 332 229 42 0 chr4 96601167 96601285 -59028835 + L1M5 LINE L1 4215 4337 -1809 1 1322 30 0 0 0 chr4 96601288 96601318 -59028802 + AT_rich Low_complexity Low_complexity 1 30 0 1 1322 24 32 0 0 chr4 96601430 96601461 -59028659 + AT_rich Low_complexity Low_complexity 1 31 0 1 1322 251 325 0 26 chr4 96601523 96601640 -59028480 + CT-rich Low_complexity Low_complexity 3 116 0 1 1322 393 75 0 0 chr4 96601724 96601777 -59028343 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1322 272 300 99 6 chr4 96602056 96602217 -59027903 + Kanga2_a DNA Tc2 344 519 -369 1 1322 871 247 194 20 chr4 96602820 96603258 -59026862 + L1_Mur3 LINE L1 2335 2848 -3032 1 1322 1124 275 47 24 chr4 96603294 96603913 -59026207 + L1_Mur3 LINE L1 3975 5149 -731 1 1322 297 302 58 23 chr4 96604355 96604528 -59025592 - Kanga2_a DNA Tc2 -144 744 566 1 1322 753 211 8 0 chr4 96604979 96605107 -59025013 - Lx5 LINE L1 -241 6809 6681 1 1322 180 111 0 0 chr4 96605273 96605300 -59024820 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 1 1322 666 278 113 66 chr4 96605308 96605716 -59024404 - Lx9 LINE L1 -285 7359 6933 1 1322 1164 271 40 0 chr4 96605758 96606035 -59024085 - Lx4B LINE L1 -4 7054 6767 1 1322 2685 100 75 29 chr4 96606036 96606490 -59023630 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1322 14101 67 11 5 chr4 96606492 96608305 -59021815 - IAPEz-int LTR ERVK -2 6479 4656 1 1322 1845 103 8 0 chr4 96608304 96608556 -59021564 - IAPEz-int LTR ERVK -5183 2497 2244 1 1322 975 59 0 0 chr4 96608551 96608670 -59021450 - IAPEz-int LTR ERVK -5004 1477 1359 1 1322 3388 60 22 16 chr4 96608670 96609236 -59020884 - IAPEz-int LTR ERVK -5819 662 168 1 1322 244 302 0 0 chr4 96609236 96609289 -59020831 - RLTR27 LTR ERVK -34 275 223 1 1322 966 123 94 0 chr4 96609289 96609460 -59020660 - IAPEz-int LTR ERVK -6286 195 9 1 1322 2687 90 91 40 chr4 96609461 96609913 -59020207 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1322 1059 198 22 9 chr4 96609913 96610142 -59019978 - Lx4B LINE L1 -287 6771 6540 1 1322 2717 176 84 76 chr4 96610205 96610955 -59019165 - RMER6A LTR ERVK 0 756 1 1 1322 2438 166 125 19 chr4 96610955 96611491 -59018629 - RMER6-int LTR ERVK -2 3175 2583 1 1322 323 154 0 0 chr4 96611495 96611547 -59018573 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1786 1 1322 2002 149 8 25 chr4 96611554 96611918 -59018202 - RMER6-int LTR ERVK -2544 633 276 1 1322 444 66 0 32 chr4 96611918 96611981 -59018139 - B2_Mm2 SINE B2 -125 70 10 1 1322 2879 121 21 4 chr4 96611981 96612461 -59017659 + Lx3_Mus LINE L1 6052 6539 -470 1 1322 5997 69 5 11 chr4 96612459 96613296 -59016824 + L1_Mus2 LINE L1 5735 6566 0 1 1322 2100 94 11 78 chr4 96613306 96613665 -59016455 + IAPLTR1a_Mm LTR ERVK 1 335 -2 1 1322 54537 14 1 15 chr4 96613677 96620211 -59009909 + IAPEz-int LTR ERVK 35 6481 0 1 1322 2091 94 11 78 chr4 96620211 96620570 -59009550 + IAPLTR1a_Mm LTR ERVK 1 335 -2 1 1322 2663 147 7 2 chr4 96620570 96621027 -59009093 + Lx3_Mus LINE L1 6528 6986 -23 1 1322 1224 73 0 0 chr4 96621027 96621191 -59008929 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 1 1322 1253 181 44 14 chr4 96621196 96621471 -59008649 - RMER6-int LTR ERVK -2888 289 7 1 1322 3144 189 75 18 chr4 96621499 96622214 -59007906 - RMER6A LTR ERVK 0 756 1 1 1322 351 278 8 108 chr4 96622464 96622593 -59007527 - PB1D10 SINE Alu -1 116 1 1 1322 22 0 0 0 chr4 96623803 96623825 -59006295 + AT_rich Low_complexity Low_complexity 1 22 0 1 1322 6725 3 0 0 chr4 96623826 96624566 -59005554 - L1Md_A LINE L1 0 6582 5843 1 1322 3810 77 4 39 chr4 96624563 96625102 -59005018 - L1_Mus1 LINE L1 -6 6561 6042 1 1322 213 271 186 10 chr4 96625480 96625577 -59004543 + L3b LINE CR1 53 166 -316 1 1322 642 238 5 122 chr4 96625938 96626134 -59003986 - ORR1D2 LTR MaLR 0 370 198 1 1322 8084 127 28 33 chr4 96626140 96628504 -59001616 - Lx LINE L1 0 6654 4312 1 1322 508 116 0 0 chr4 96628511 96628606 -59001514 - L1_Mus3 LINE L1 -1 6637 6543 1 1322 492 328 21 27 chr4 96628606 96628794 -59001326 - ORR1D2 LTR MaLR -169 201 15 1 1322 474 18 0 0 chr4 96629218 96629273 -59000847 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1322 396 0 0 0 chr4 96629273 96629316 -59000804 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1322 540 111 0 0 chr4 96629894 96629975 -59000145 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 1 1322 227 275 36 9 chr4 96630104 96630110 -59000010 + (TA)n Simple_repeat Simple_repeat 1 6 0 1 1322 198 0 0 0 chr4 96630110 96630132 -58999988 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1322 227 275 36 9 chr4 96630132 96630235 -58999885 + (TA)n Simple_repeat Simple_repeat 2 108 0 1 1322 5497 112 20 20 chr4 96630279 96631138 -58998982 - L1_Mus4 LINE L1 -4 6632 5774 1 1322 240 287 75 115 chr4 96631571 96631823 -58998297 + LTR86B2 LTR ERVL 108 349 -138 1 1322 351 258 58 29 chr4 96631838 96632010 -58998110 + Lx2B LINE L1 6823 6999 -1 1 1322 4446 218 31 12 chr4 96632021 96633238 -58996882 - Lx4B LINE L1 -1 7057 5766 1 1322 445 252 0 0 chr4 96633492 96633585 -58996535 - PB1D9 SINE Alu -56 93 1 1 1322 290 258 99 84 chr4 96633585 96633630 -58996490 - MT2B2 LTR ERVL -429 155 109 1 1322 283 330 27 9 chr4 96634291 96634401 -58995719 - MIRb SINE MIR -55 213 102 1 1322 190 246 24 134 chr4 96635327 96635454 -58994666 + MIRm SINE MIR 76 188 -88 1 1322 355 364 73 73 chr4 96637808 96638069 -58992051 + LTR33 LTR ERVL 255 515 0 1 1322 509 329 179 35 chr4 96639706 96640052 -58990068 - MLT1I LTR MaLR -13 398 3 1 1322 200 189 27 0 chr4 96642381 96642418 -58987702 + CT-rich Low_complexity Low_complexity 4 41 0 1 1322 180 77 0 0 chr4 96642421 96642447 -58987673 + (TCTCTG)n Simple_repeat Simple_repeat 1 26 0 1 1322 396 292 18 0 chr4 96643156 96643269 -58986851 + PB1 SINE Alu 12 126 -1 1 1322 182 0 0 97 chr4 96643279 96643310 -58986810 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1322 22 0 0 0 chr4 96644721 96644743 -58985377 + AT_rich Low_complexity Low_complexity 1 22 0 1 1322 522 243 177 12 chr4 96647462 96647564 -58982556 - Lx9 LINE L1 -29 7615 7495 1 1322 459 35 0 0 chr4 96647564 96647621 -58982499 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1322 522 243 177 12 chr4 96647621 96647772 -58982348 - Lx9 LINE L1 -150 7494 7321 1 1322 507 45 0 0 chr4 96647775 96647841 -58982279 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1322 198 0 0 0 chr4 96647850 96647872 -58982248 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1322 289 256 73 0 chr4 96648485 96648567 -58981553 + L1MD LINE L1 4052 4139 -2007 1 1322 342 337 43 27 chr4 96649013 96649199 -58980921 + L1M4 LINE L1 4266 4454 -1692 1 1322 537 354 75 62 chr4 96649242 96649712 -58980408 + L1M4 LINE L1 4578 5053 -1093 1 1322 312 27 0 0 chr4 96649906 96649943 -58980177 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1322 791 334 60 52 chr4 96649954 96650055 -58980065 + Lx8 LINE L1 6369 6459 -1014 1 1322 1028 31 0 8 chr4 96650055 96650184 -58979936 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 1 1322 791 334 60 52 chr4 96650184 96650733 -58979387 + Lx8 LINE L1 6460 7024 -449 1 1322 210 286 36 0 chr4 96650813 96650869 -58979251 + polypurine Low_complexity Low_complexity 6 63 0 1 1322 222 264 36 28 chr4 96650876 96651129 -58978991 + GA-rich Low_complexity Low_complexity 1 255 0 1 1322 311 313 51 70 chr4 96651129 96651287 -58978833 + HAL1-3A_ME LINE L1 2285 2439 -419 1 1322 346 172 67 27 chr4 96651296 96651445 -58978675 + GA-rich Low_complexity Low_complexity 4 158 0 1 1322 305 340 70 7 chr4 96651460 96651602 -58978518 + HAL1-3A_ME LINE L1 2289 2439 -419 1 1322 184 191 15 31 chr4 96651631 96651696 -58978424 + GA-rich Low_complexity Low_complexity 2 65 0 1 1322 1327 53 0 96 chr4 96651696 96651905 -58978215 + L1Md_F2 LINE L1 5398 5586 -297 1 1322 7649 58 19 0 chr4 96651905 96652871 -58977249 + L1Md_F2 LINE L1 5587 6570 -12 1 1322 869 291 71 17 chr4 96652941 96653238 -58976882 - MLT-int LTR MaLR -11 1724 1412 1 1322 218 343 15 0 chr4 96654061 96654128 -58975992 + PB1D10 SINE Alu 1 68 -49 1 1322 1639 266 25 8 chr4 96654217 96654618 -58975502 + MTC LTR MaLR 14 421 0 1 1322 807 298 146 27 chr4 96654622 96655025 -58975095 - MLT-int LTR MaLR -1284 451 1 1 1322 23 0 0 0 chr4 96655514 96655537 -58974583 + AT_rich Low_complexity Low_complexity 1 23 0 1 1322 6567 40 0 0 chr4 96655582 96656365 -58973755 + L1Md_T LINE L1 5799 6581 -1 1 1322 422 65 16 0 chr4 96656378 96656440 -58973680 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1 1322 265 125 18 18 chr4 96656440 96656497 -58973623 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 1 1322 195 42 0 0 chr4 96656540 96656564 -58973556 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1322 28 0 0 0 chr4 96657593 96657621 -58972499 + AT_rich Low_complexity Low_complexity 1 28 0 2 1322 195 354 12 12 chr4 96657661 96657744 -58972376 - MIR3 SINE MIR -2 206 124 2 1322 2020 51 12 0 chr4 96659056 96659312 -58970808 + L1Md_F2 LINE L1 6323 6581 -1 2 1322 1026 217 127 17 chr4 96659494 96659785 -58970335 + Lx6 LINE L1 7003 7325 -135 2 1322 1851 246 123 10 chr4 96659767 96660481 -58969639 + Lx7 LINE L1 6902 7696 0 2 1322 306 361 109 20 chr4 96660921 96661215 -58968905 - L2 LINE L2 -729 2690 2371 2 1322 36874 6 1 1 chr4 96661232 96667000 -58963120 + L1Md_A LINE L1 1 5586 -297 2 1322 9046 1 0 0 chr4 96667000 96667996 -58962124 + L1Md_A LINE L1 5587 6582 0 2 1322 218 204 0 0 chr4 96668462 96668506 -58961614 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 2 1322 180 259 87 87 chr4 96668834 96668961 -58961159 + L3 LINE CR1 4000 4126 -363 2 1322 496 283 97 52 chr4 96673293 96673635 -58956485 + MTE2b LTR MaLR 1 368 -2 2 1322 395 266 109 34 chr4 96673722 96673897 -58956223 - B3 SINE B2 -5 211 24 2 1322 3392 30 2 0 chr4 96674587 96674981 -58955139 + MTA_Mm LTR MaLR 2 396 0 2 1322 243 333 109 0 chr4 96676325 96676463 -58953657 + Charlie16a DNA MER1_type 123 275 -67 2 1322 33 0 0 0 chr4 96676465 96676498 -58953622 + AT_rich Low_complexity Low_complexity 1 33 0 2 1322 618 285 21 43 chr4 96676514 96676701 -58953419 - B3A SINE B2 -15 183 1 2 1322 4610 133 56 17 chr4 96676880 96677713 -58952407 - L1_Mur1 LINE L1 -388 5498 4632 2 1322 207 0 0 0 chr4 96677713 96677736 -58952384 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1322 4610 133 56 17 chr4 96677736 96677764 -58952356 - L1_Mur1 LINE L1 -1255 4631 4604 2 1322 8579 141 12 10 chr4 96677763 96679240 -58950880 + Lx3C LINE L1 5499 6975 -1 2 1322 27 0 0 0 chr4 96680276 96680303 -58949817 + AT_rich Low_complexity Low_complexity 1 27 0 2 1322 21 0 0 0 chr4 96680445 96680466 -58949654 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 347 333 0 0 chr4 96681072 96681159 -58948961 - B1_Mus1 SINE Alu -58 90 4 2 1322 255 259 45 90 chr4 96681080 96681169 -58948951 - MT2B LTR ERVL -363 238 154 2 1322 1835 253 108 2 chr4 96681779 96682231 -58947889 - Lx6 LINE L1 -4 7456 6957 2 1322 295 229 71 0 chr4 96683911 96683981 -58946139 + B1_Mur4 SINE Alu 39 113 -37 2 1322 378 0 0 0 chr4 96684011 96684053 -58946067 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2 1322 922 117 6 6 chr4 96684053 96684233 -58945887 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1322 562 282 54 5 chr4 96684463 96684666 -58945454 + Lx8 LINE L1 6747 6959 -514 2 1322 1741 243 26 13 chr4 96684666 96685049 -58945071 + MTD LTR MaLR 1 388 -31 2 1322 848 323 13 29 chr4 96685076 96685388 -58944732 + Lx8 LINE L1 6954 7260 -213 2 1322 1785 260 71 40 chr4 96685464 96685968 -58944152 - RMER19C LTR ERVK 0 611 92 2 1322 229 87 174 0 chr4 96686475 96686521 -58943599 + Lx8 LINE L1 7420 7473 0 2 1322 485 381 24 64 chr4 96686669 96686966 -58943154 + MLT1H LTR MaLR 41 325 -224 2 1322 225 139 0 0 chr4 96687069 96687112 -58943008 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1322 432 0 0 0 chr4 96687112 96687160 -58942960 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1322 291 352 54 15 chr4 96687173 96687303 -58942817 - MER5A DNA MER1_type -29 160 26 2 1322 594 79 0 0 chr4 96687912 96688001 -58942119 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1322 339 358 48 76 chr4 96688112 96688363 -58941757 + L4 LINE RTE 1581 1824 -205 2 1322 28 29 0 0 chr4 96688662 96688697 -58941423 + AT_rich Low_complexity Low_complexity 1 35 0 2 1322 447 250 57 0 chr4 96688716 96688856 -58941264 - L1MA6 LINE L1 -29 6271 6124 2 1322 203 103 26 0 chr4 96688856 96688895 -58941225 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1322 225 154 0 0 chr4 96689055 96689094 -58941026 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 1322 270 0 0 0 chr4 96689885 96689915 -58940205 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 1322 3088 205 112 20 chr4 96690063 96690795 -58939325 + Lx4B LINE L1 6250 7048 -10 2 1322 264 59 0 0 chr4 96690795 96690829 -58939291 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1322 24 32 0 0 chr4 96691411 96691442 -58938678 + AT_rich Low_complexity Low_complexity 1 31 0 2 1322 1068 116 0 0 chr4 96691443 96691589 -58938531 + B1_Mus2 SINE Alu 2 147 0 2 1322 270 0 0 0 chr4 96691702 96691732 -58938388 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1322 6943 113 26 11 chr4 96693542 96694885 -58935235 + Lx LINE L1 5283 6646 -8 2 1322 182 118 29 0 chr4 96695160 96695194 -58934926 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1322 262 203 0 0 chr4 96695195 96695254 -58934866 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 2 1322 719 325 0 0 chr4 96696094 96696288 -58933832 - MLT1B LTR MaLR 0 390 197 2 1322 534 179 7 15 chr4 96696302 96696438 -58933682 + (TG)n Simple_repeat Simple_repeat 1 135 0 2 1322 402 21 0 0 chr4 96696446 96696493 -58933627 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1322 351 0 0 0 chr4 96696494 96696533 -58933587 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1322 257 235 0 0 chr4 96696540 96696591 -58933529 - MLT1B LTR MaLR -214 176 126 2 1322 414 0 0 0 chr4 96696777 96696823 -58933297 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1322 1661 279 143 13 chr4 96697064 96697453 -58932667 - Lx6 LINE L1 -57 7403 6958 2 1322 648 38 0 0 chr4 96697453 96697532 -58932588 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1322 1661 279 143 13 chr4 96697532 96697749 -58932371 - Lx6 LINE L1 -503 6957 6719 2 1322 3532 55 0 2 chr4 96697752 96698191 -58931929 - L1_Mus1 LINE L1 0 6567 6130 2 1322 3545 104 0 2 chr4 96698191 96698700 -58931420 - L1_Mm LINE L1 -1138 4745 4238 2 1322 739 273 24 6 chr4 96698715 96698881 -58931239 - B3 SINE B2 -30 186 18 2 1322 457 340 45 42 chr4 96698912 96699345 -58930775 - L1M4 LINE L1 -3073 3073 2641 2 1322 418 319 60 37 chr4 96699378 96699677 -58930443 - L1M4 LINE L1 -3486 2660 2355 2 1322 289 167 158 53 chr4 96700438 96700533 -58929587 + Lx8 LINE L1 7363 7467 -6 2 1322 1855 279 85 29 chr4 96700556 96701551 -58928569 - L1M3 LINE L1 -1547 4593 3543 2 1322 429 20 0 0 chr4 96702412 96702462 -58927658 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 2 1322 1168 83 0 27 chr4 96702464 96702649 -58927471 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1322 23 0 0 0 chr4 96702927 96702950 -58927170 + AT_rich Low_complexity Low_complexity 1 23 0 2 1322 274 293 241 5 chr4 96704990 96705189 -58924931 - MER63C DNA AcHobo 0 930 685 2 1322 534 323 110 26 chr4 96705274 96705738 -58924382 - MER63C DNA AcHobo -270 660 158 2 1322 182 292 191 0 chr4 96706019 96706108 -58924012 - MIRb SINE MIR -125 143 38 2 1322 215 121 0 0 chr4 96706835 96706868 -58923252 + B1_Mus2 SINE Alu 1 33 -114 2 1322 400 43 0 3 chr4 96706857 96706915 -58923205 + B1_Mm SINE Alu 64 139 -8 2 1322 641 13 13 0 chr4 96706915 96706993 -58923127 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 2 1322 417 39 0 0 chr4 96707280 96707331 -58922789 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1322 367 244 168 0 chr4 96707565 96707684 -58922436 + Lx6 LINE L1 7065 7203 -257 2 1322 226 208 0 0 chr4 96707692 96707740 -58922380 + Lx6 LINE L1 7387 7434 -26 2 1322 647 289 90 57 chr4 96707766 96708045 -58922075 + MER2 DNA MER2_type 58 345 0 2 1322 451 240 0 71 chr4 96708507 96708619 -58921501 - MTEa LTR MaLR -8 371 268 2 1322 679 314 60 63 chr4 96708824 96709171 -58920949 - MTEa LTR MaLR 0 379 34 2 1322 2484 47 81 0 chr4 96709171 96709491 -58920629 + ORR1A1 LTR MaLR 1 346 0 2 1322 6289 90 20 5 chr4 96709491 96710680 -58919440 + ORR1A1-int LTR MaLR 1 1677 -115 2 1322 2486 68 61 0 chr4 96710680 96711006 -58919114 + ORR1A1 LTR MaLR 1 346 0 2 1322 1182 204 227 56 chr4 96711133 96711617 -58918503 - RMER2 LTR ERV1 0 567 1 2 1322 1279 281 85 11 chr4 96712230 96712608 -58917512 + Lx6 LINE L1 7028 7433 -27 2 1322 340 279 79 97 chr4 96712767 96713083 -58917037 + ORR1E LTR MaLR 15 331 -39 2 1322 644 285 46 18 chr4 96714481 96714699 -58915421 + ID_B1 SINE B4 1 224 0 2 1322 611 243 203 42 chr4 96714732 96715061 -58915059 + MTC LTR MaLR 21 417 -2 2 1322 243 0 0 0 chr4 96716640 96716667 -58913453 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1322 271 315 44 39 chr4 96717988 96718193 -58911927 - L1ME1 LINE L1 -24 6155 5950 2 1322 21 71 0 0 chr4 96718195 96718237 -58911883 + AT_rich Low_complexity Low_complexity 1 42 0 2 1322 270 332 51 20 chr4 96718293 96718500 -58911620 - L1ME1 LINE L1 -342 5822 5607 2 1322 274 164 54 14 chr4 96718610 96718684 -58911436 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 2 1322 292 340 43 0 chr4 96719276 96719417 -58910703 + MLT1L LTR MaLR 464 610 0 2 1322 611 346 23 5 chr4 96719433 96719648 -58910472 - MIRb SINE MIR -38 230 12 2 1322 290 331 89 30 chr4 96721386 96721554 -58908566 + MLT1A0 LTR MaLR 114 291 -74 2 1322 225 0 0 0 chr4 96721694 96721719 -58908401 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1322 2482 204 23 39 chr4 96721818 96722514 -58907606 - Lx4B LINE L1 -18 6982 6276 2 1322 601 160 137 16 chr4 96722590 96722780 -58907340 - Lx9 LINE L1 -7 7637 7425 2 1322 477 319 70 35 chr4 96722920 96723092 -58907028 - Lx8 LINE L1 -170 7303 7126 2 1322 296 293 138 9 chr4 96723136 96723353 -58906767 - L1MB7 LINE L1 -30 6154 5910 2 1322 423 291 60 23 chr4 96723358 96723576 -58906544 - L1MB7 LINE L1 -1310 4836 4611 2 1322 433 284 36 63 chr4 96723648 96723870 -58906250 - L1MB7 LINE L1 -1710 4436 4221 2 1322 423 75 0 0 chr4 96723894 96723961 -58906159 - L1_Mus3 LINE L1 -3 6635 6569 2 1322 3403 105 6 2 chr4 96723963 96724448 -58905672 - L1_Mus4 LINE L1 -378 6258 5772 2 1322 509 204 65 0 chr4 96724600 96724708 -58905412 + ID_B1 SINE B4 108 222 -2 2 1322 252 377 26 26 chr4 96724816 96724933 -58905187 + RSINE1 SINE B4 3 119 -46 2 1322 2429 71 3 12 chr4 96724988 96725328 -58904792 - L1_Mur1 LINE L1 -633 5253 4917 2 1322 3273 105 36 18 chr4 96725328 96725832 -58904288 + L1_Mur1 LINE L1 5235 5747 -139 2 1322 493 177 17 26 chr4 96725832 96725948 -58904172 + Lx3A LINE L1 6856 6970 -11 2 1322 26 0 0 0 chr4 96725957 96725983 -58904137 + AT_rich Low_complexity Low_complexity 1 26 0 2 1322 886 282 105 19 chr4 96726337 96727207 -58902913 + L1MB3 LINE L1 1538 2589 -3793 3 1322 1376 324 99 72 chr4 96727249 96728394 -58901726 + Lx8 LINE L1 6214 7389 -84 3 1322 355 315 104 29 chr4 96728678 96728917 -58901203 + L1MB3 LINE L1 2567 2815 -3564 3 1322 246 379 17 17 chr4 96728975 96729093 -58901027 - ID_B1 SINE B4 -31 193 76 3 1322 520 283 57 48 chr4 96729093 96729502 -58900618 + L1MB3 LINE L1 2789 3214 -3162 3 1322 1378 303 113 20 chr4 96729526 96730834 -58899286 + L1MB3 LINE L1 4958 6391 -16 3 1322 251 21 61 20 chr4 96731032 96731081 -58899039 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1323 212 54 54 0 chr4 96731650 96731687 -58898433 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1323 37 23 0 0 chr4 96732215 96732259 -58897861 + AT_rich Low_complexity Low_complexity 1 44 0 3 1323 511 135 10 10 chr4 96732360 96732457 -58897663 + CT-rich Low_complexity Low_complexity 3 99 0 3 1323 6349 97 63 2 chr4 96732743 96733667 -58896453 - L1_Mus4 LINE L1 -14 6622 5643 3 1323 239 298 63 47 chr4 96733742 96733869 -58896251 + MIR SINE MIR 117 245 -17 3 1323 26 0 0 0 chr4 96734184 96734210 -58895910 + AT_rich Low_complexity Low_complexity 1 26 0 3 1323 559 302 58 77 chr4 96734990 96735456 -58894664 + L1MA4 LINE L1 5482 5938 -362 3 1323 632 311 75 35 chr4 96735797 96736281 -58893839 + L1M2 LINE L1 4576 5055 -831 3 1323 504 280 39 34 chr4 96736401 96736608 -58893512 + RLTR42-int LTR ERVK 1191 1398 -4124 3 1323 5055 60 6 3 chr4 96736718 96737366 -58892754 + L1_Mus2 LINE L1 5917 6566 0 3 1323 405 0 0 0 chr4 96737551 96737596 -58892524 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3 1323 618 49 0 0 chr4 96738453 96738535 -58891585 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1323 518 133 11 0 chr4 96738535 96738625 -58891495 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 1323 28 61 0 0 chr4 96738971 96739020 -58891100 + AT_rich Low_complexity Low_complexity 1 49 0 3 1323 180 111 0 0 chr4 96739350 96739377 -58890743 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 3 1323 250 253 36 0 chr4 96739392 96739475 -58890645 + Lx9 LINE L1 7559 7644 0 3 1323 24 0 0 0 chr4 96739600 96739624 -58890496 + AT_rich Low_complexity Low_complexity 1 24 0 3 1323 3060 17 0 0 chr4 96740276 96740622 -58889498 + ORR1A0 LTR MaLR 1 346 0 3 1323 13937 54 6 3 chr4 96740622 96742408 -58887712 + ORR1A0-int LTR MaLR 1 1792 0 3 1323 2976 23 6 0 chr4 96742408 96742752 -58887368 + ORR1A0 LTR MaLR 1 346 0 3 1323 33 80 0 0 chr4 96743842 96743917 -58886203 + AT_rich Low_complexity Low_complexity 1 75 0 3 1323 756 255 129 76 chr4 96744191 96744547 -58885573 - RLTR42-int LTR ERVK -890 4632 4258 3 1323 3218 265 43 18 chr4 96745165 96746021 -58884099 - Lx7 LINE L1 -329 7367 6490 3 1323 1424 66 0 0 chr4 96746643 96746826 -58883294 + L1_Mus4 LINE L1 5659 5841 -795 3 1323 36632 31 2 8 chr4 96746826 96752012 -58878108 + L1Md_T LINE L1 441 5586 -297 3 1323 8343 39 0 0 chr4 96752012 96753008 -58877112 + L1Md_T LINE L1 5587 6582 0 3 1323 24 32 0 0 chr4 96753063 96753094 -58877026 + AT_rich Low_complexity Low_complexity 1 31 0 3 1323 5532 96 6 28 chr4 96753099 96753922 -58876198 + L1_Mus4 LINE L1 5827 6631 -5 3 1323 357 229 16 0 chr4 96755432 96755554 -58874566 + Lx9 LINE L1 7520 7643 -1 3 1323 2057 303 68 18 chr4 96755596 96756356 -58873764 - Lx8 LINE L1 -42 7431 6634 3 1323 604 75 32 0 chr4 96756494 96756588 -58873532 - L1_Mus2 LINE L1 0 6566 6470 3 1323 300 53 0 0 chr4 96756818 96756856 -58873264 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 3 1323 2324 217 45 11 chr4 96756857 96757393 -58872727 + Lx9 LINE L1 6596 7149 -495 3 1323 764 277 25 41 chr4 96757434 96757630 -58872490 + B3 SINE B2 24 216 0 3 1323 559 322 88 4 chr4 96757783 96758011 -58872109 - MIR SINE MIR -1 261 15 3 1323 432 0 0 0 chr4 96758127 96758175 -58871945 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1323 227 291 111 25 chr4 96758651 96758732 -58871388 + MIRm SINE MIR 6 93 -183 3 1323 1069 61 0 0 chr4 96759454 96759586 -58870534 + B1_Mm SINE Alu 2 133 -14 3 1323 203 0 0 36 chr4 96759590 96759618 -58870502 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1323 903 244 50 12 chr4 96760379 96760620 -58869500 + MER121 Unknown Unknown 87 336 -76 3 1323 36 53 0 0 chr4 96760797 96760854 -58869266 + AT_rich Low_complexity Low_complexity 1 57 0 3 1323 3860 161 59 122 chr4 96760870 96761780 -58868340 + RMER19B LTR ERVK 1 853 -49 3 1323 5992 69 0 0 chr4 96761780 96762558 -58867562 - L1Md_F2 LINE L1 -511 5372 4595 3 1323 1882 40 0 0 chr4 96762555 96762777 -58867343 + L1Md_F2 LINE L1 5365 5586 -297 3 1323 7875 53 1 4 chr4 96762777 96763764 -58866356 + L1Md_F2 LINE L1 5587 6570 -12 3 1323 313 125 0 18 chr4 96763764 96763821 -58866299 + RMER19B LTR ERVK 841 896 -6 3 1323 1327 314 56 96 chr4 96763837 96764179 -58865941 + Lx8 LINE L1 6539 6888 -585 3 1323 1900 99 0 14 chr4 96764179 96764455 -58865665 + L1Md_F2 LINE L1 6299 6570 -12 3 1323 1327 314 56 96 chr4 96764455 96764786 -58865334 + Lx8 LINE L1 6889 7187 -286 3 1323 2801 82 11 55 chr4 96764786 96765226 -58864894 - BGLII LTR ERVK 0 421 1 3 1323 1327 314 56 96 chr4 96765226 96765249 -58864871 + Lx8 LINE L1 7188 7208 -265 3 1323 357 281 19 86 chr4 96765251 96765356 -58864764 + AmnSINE1 SINE SINE 2 99 -476 3 1323 25 51 0 0 chr4 96765532 96765571 -58864549 + AT_rich Low_complexity Low_complexity 1 39 0 3 1323 238 135 96 0 chr4 96766331 96766383 -58863737 + L1M LINE L1 5369 5425 -749 3 1323 393 22 0 0 chr4 96767441 96767487 -58862633 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1323 228 314 87 10 chr4 96769037 96769140 -58860980 - MIRb SINE MIR -135 133 23 3 1323 191 347 36 29 chr4 96769628 96769730 -58860390 - MIR SINE MIR -148 128 19 3 1323 1618 186 97 3 chr4 96770252 96770603 -58859517 + ORR1C2 LTR MaLR 1 384 0 3 1323 522 54 0 0 chr4 96771048 96771122 -58858998 + L1_Mus2 LINE L1 6493 6566 0 3 1323 333 351 36 0 chr4 96772434 96772545 -58857575 - B3 SINE B2 -101 115 1 3 1323 884 276 85 58 chr4 96772665 96773161 -58856959 - Lx7 LINE L1 -1588 6108 5600 3 1323 1300 312 6 11 chr4 96773758 96774105 -58856015 - Lx6 LINE L1 -3 7457 7113 3 1323 189 133 0 0 chr4 96775036 96775066 -58855054 + L2a LINE L2 3393 3422 -4 3 1323 225 333 23 11 chr4 96775282 96775370 -58854750 - MLT1J2 LTR MaLR -7 441 353 3 1323 1454 176 48 88 chr4 96775977 96776307 -58853813 - ORR1A4 LTR MaLR -12 317 1 3 1323 193 305 91 45 chr4 96777191 96777301 -58852819 + L2c LINE L2 3048 3162 -225 3 1323 6353 53 26 8 chr4 96777484 96778051 -58852069 - L1_Mus3 LINE L1 0 6638 6056 3 1323 1069 201 128 36 chr4 96778051 96778355 -58851765 - IAPEY3_LTR LTR ERVK 0 332 1 3 1323 6353 53 26 8 chr4 96778355 96778621 -58851499 - L1_Mus3 LINE L1 -583 6055 5790 3 1323 181 365 47 28 chr4 96779066 96779173 -58850947 - MIRb SINE MIR -43 225 117 3 1323 8437 243 31 24 chr4 96779396 96781491 -58848629 - Lx7 LINE L1 0 7696 5587 3 1323 1162 112 6 12 chr4 96781495 96781666 -58848454 - B2_Mm1t SINE B2 -23 170 1 3 1323 964 210 0 0 chr4 96781667 96781843 -58848277 - L1_Mur3 LINE L1 -281 5599 5424 3 1323 525 331 0 0 chr4 96781859 96781998 -58848122 + RSINE1 SINE B4 4 142 -23 3 1323 270 0 0 0 chr4 96782004 96782034 -58848086 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1323 504 0 0 0 chr4 96782035 96782091 -58848029 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1323 2603 73 49 51 chr4 96782208 96782599 -58847521 - L1_Mus2 LINE L1 0 6566 6177 3 1323 644 256 107 5 chr4 96783145 96783341 -58846779 + B3 SINE B2 1 216 0 3 1323 286 297 78 169 chr4 96783483 96783637 -58846483 + RSINE1 SINE B4 8 147 -18 3 1323 699 220 180 53 chr4 96783695 96783940 -58846180 + MLT1B LTR MaLR 113 388 -2 3 1323 972 257 145 17 chr4 96784077 96784589 -58845531 - Lx7 LINE L1 -1620 6024 5401 3 1323 854 322 95 48 chr4 96784614 96785223 -58844897 + Lx8 LINE L1 6832 7469 -4 3 1323 452 284 37 32 chr4 96785363 96785552 -58844568 - Lx7 LINE L1 -6873 855 666 3 1323 978 285 109 24 chr4 96787641 96788091 -58842029 + RCHARR1 DNA MER1_type 5 492 -482 3 1323 1022 243 65 10 chr4 96788070 96788378 -58841742 + RCHARR1 DNA MER1_type 649 973 -1 3 1323 368 361 0 0 chr4 96789017 96789125 -58840995 - B1F SINE Alu -30 119 12 3 1323 350 282 191 106 chr4 96793490 96793772 -58836348 - MTEb LTR MaLR 0 379 65 3 1323 263 218 77 44 chr4 96793845 96793936 -58836184 - MT2A LTR ERVL -437 96 3 3 1323 201 136 0 43 chr4 96795235 96795281 -58834839 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1323 1359 126 0 27 chr4 96795281 96795501 -58834619 + RMER17C-int LTR ERVK 3025 3238 0 3 1323 798 199 286 25 chr4 96795502 96795827 -58834293 + RMER17C LTR ERVK 1 410 0 3 1323 232 346 71 16 chr4 96796376 96796558 -58833562 - MIR SINE MIR -2 260 69 3 1323 803 238 21 7 chr4 96796560 96796726 -58833394 + B3A SINE B2 1 158 -35 3 1323 402 21 0 0 chr4 96796726 96796773 -58833347 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1323 377 295 42 99 chr4 96796773 96796798 -58833322 + B2_Mm1t SINE B2 159 181 -12 3 1323 1171 290 65 17 chr4 96797225 96797576 -58832544 - ORR1D2 LTR MaLR -2 368 1 3 1323 614 285 23 0 chr4 96799416 96799588 -58830532 + LTR33 LTR ERVL 340 515 0 3 1323 279 0 0 0 chr4 96800430 96800461 -58829659 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1323 243 0 0 0 chr4 96800858 96800885 -58829235 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1323 294 29 0 0 chr4 96800887 96800922 -58829198 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1323 328 234 161 45 chr4 96800953 96801065 -58829055 - B4A SINE B4 -60 232 108 3 1323 213 298 0 0 chr4 96801078 96801135 -58828985 - B4A SINE B4 -235 57 1 3 1323 246 32 0 0 chr4 96801593 96801624 -58828496 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1323 1202 28 7 0 chr4 96801624 96801767 -58828353 - B1_Mm SINE Alu -3 144 1 3 1323 542 86 12 0 chr4 96802187 96802268 -58827852 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 3 1323 505 314 110 52 chr4 96803718 96804027 -58826093 + Lx8 LINE L1 6110 6436 -1037 3 1323 1670 209 81 9 chr4 96804027 96804375 -58825745 + MTC LTR MaLR 37 409 -12 3 1323 784 338 38 33 chr4 96804380 96804747 -58825373 + Lx8 LINE L1 6650 7018 -455 3 1323 381 375 44 29 chr4 96805095 96805301 -58824819 - MLT1C LTR MaLR -4 463 255 3 1323 251 353 57 51 chr4 96805318 96805494 -58824626 - MLT1C LTR MaLR -311 194 18 3 1323 280 318 98 37 chr4 96806194 96806357 -58823763 - LTR16A1 LTR ERVL -39 417 245 3 1323 2054 266 42 25 chr4 96806631 96807219 -58822901 - Lx5 LINE L1 -10 7040 6455 3 1323 333 62 0 44 chr4 96807220 96807288 -58822832 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 3 1323 26 30 0 0 chr4 96807756 96807789 -58822331 + AT_rich Low_complexity Low_complexity 1 33 0 4 1323 802 201 81 0 chr4 96807943 96808177 -58821943 - Lx9 LINE L1 -1 7643 7391 4 1323 3378 133 48 4 chr4 96808233 96808790 -58821330 - Lx4A LINE L1 -1 7057 6476 4 1323 1294 193 133 30 chr4 96808792 96809283 -58820837 - Lx5 LINE L1 -1689 6007 5426 3 1323 646 352 13 53 chr4 96810178 96810478 -58819642 + B4A SINE B4 5 292 0 4 1323 494 343 51 6 chr4 96810836 96811012 -58819108 - MER20 DNA MER1_type -1 218 35 4 1323 938 75 0 0 chr4 96812096 96812230 -58817890 - L1_Mus2 LINE L1 0 6566 6433 4 1323 297 0 0 0 chr4 96812634 96812667 -58817453 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1323 24 32 0 0 chr4 96812786 96812817 -58817303 + AT_rich Low_complexity Low_complexity 1 31 0 4 1323 726 332 49 26 chr4 96813420 96813872 -58816248 - Lx9 LINE L1 -128 7516 7055 4 1323 354 171 26 0 chr4 96814518 96814594 -58815526 + L1MA8 LINE L1 6198 6275 -16 4 1323 2421 264 102 30 chr4 96815503 96816242 -58813878 + Lx6 LINE L1 6668 7459 -1 4 1323 1877 332 56 21 chr4 96817943 96818907 -58811213 + Lx8 LINE L1 6353 7350 -123 4 1323 902 235 175 13 chr4 96818928 96819243 -58810877 + MTC LTR MaLR 36 401 -20 4 1323 30 0 0 0 chr4 96819264 96819294 -58810826 + AT_rich Low_complexity Low_complexity 1 30 0 4 1323 1740 219 107 20 chr4 96819372 96819811 -58810309 + Lx7 LINE L1 6882 7358 -338 4 1323 581 124 10 0 chr4 96819849 96819946 -58810174 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1323 468 0 0 0 chr4 96820930 96820982 -58809138 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1323 449 80 13 0 chr4 96821021 96821096 -58809024 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1323 233 306 48 166 chr4 96824037 96824182 -58805938 - MamGypLTR1d LTR Gypsy -130 683 556 4 1323 237 202 55 22 chr4 96824345 96824436 -58805684 - L1MB7 LINE L1 -2 6182 6089 4 1323 263 336 43 21 chr4 96824653 96824793 -58805327 + MIRb SINE MIR 122 264 -4 4 1323 362 349 6 50 chr4 96824931 96825091 -58805029 + Tigger7 DNA MER2_type 2 154 -2337 4 1323 231 333 72 22 chr4 96825213 96825351 -58804769 - RMER15 LTR ERVL -155 420 276 4 1323 310 296 164 30 chr4 96825627 96825895 -58804225 + Tigger7 DNA MER2_type 2156 2459 -32 4 1323 269 203 80 13 chr4 96826168 96826243 -58803877 + PB1D9 SINE Alu 40 119 -1 4 1323 540 140 0 0 chr4 96826273 96826366 -58803754 + (GGGA)n Simple_repeat Simple_repeat 4 96 0 4 1323 301 310 71 65 chr4 96826884 96827039 -58803081 - RSINE1 SINE B4 -8 157 2 4 1323 239 269 52 41 chr4 96827054 96827151 -58802969 - L1MC1 LINE L1 -5 6328 6231 4 1323 649 290 35 79 chr4 96827157 96827359 -58802761 - B3A SINE B2 0 216 24 4 1323 414 324 43 22 chr4 96827395 96827534 -58802586 - MER119 DNA MER1_type -372 211 70 4 1323 326 192 23 98 chr4 96828265 96828398 -58801722 + Lx9 LINE L1 7517 7639 -5 4 1323 876 82 0 0 chr4 96828424 96828546 -58801574 + (GAAA)n Simple_repeat Simple_repeat 1 122 0 4 1323 375 277 0 24 chr4 96829086 96829171 -58800949 - Lx8 LINE L1 -174 7299 7217 4 1323 474 179 0 0 chr4 96834634 96834729 -58795391 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1323 198 128 0 0 chr4 96834816 96834855 -58795265 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 4 1323 224 336 51 29 chr4 96834924 96835062 -58795058 - L2 LINE L2 -777 2642 2502 4 1323 180 0 0 0 chr4 96835539 96835559 -58794561 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1323 239 364 81 46 chr4 96836144 96836317 -58793803 - MER117 DNA MER1_type -14 183 5 4 1323 8267 123 19 13 chr4 96836689 96838367 -58791753 - Lx3C LINE L1 -7 6969 5274 4 1323 726 339 80 64 chr4 96839344 96839830 -58790290 + MLT1D LTR MaLR 12 505 0 4 1323 204 377 50 45 chr4 96839859 96840059 -58790061 - MIR SINE MIR -4 258 58 4 1323 351 280 15 36 chr4 96841830 96841967 -58788153 - Lx7 LINE L1 -4 7692 7559 4 1323 3076 151 11 0 chr4 96841995 96842519 -58787601 - Lx LINE L1 -202 6452 5923 4 1323 1062 150 0 6 chr4 96842529 96842710 -58787410 + Lx LINE L1 6473 6652 -2 4 1323 3736 283 70 72 chr4 96842729 96842875 -58787245 - Lx7 LINE L1 -267 7429 7266 4 1323 450 0 0 0 chr4 96842875 96842925 -58787195 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 4 1323 435 19 0 0 chr4 96842934 96842986 -58787134 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1323 3736 285 79 65 chr4 96842986 96843686 -58786434 - Lx7 LINE L1 -433 7263 6503 4 1323 422 121 0 6 chr4 96843686 96843754 -58786366 + RLTR10D LTR ERVK 1 64 -326 4 1323 3736 285 79 65 chr4 96843754 96844850 -58785270 - Lx7 LINE L1 -433 6502 5308 4 1323 887 216 40 5 chr4 96844853 96845076 -58785044 + L1_Mur3 LINE L1 4341 4571 -1309 4 1323 217 138 86 0 chr4 96845126 96845184 -58784936 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 1323 646 230 93 5 chr4 96845243 96845457 -58784663 + L1_Mur3 LINE L1 4990 5222 -658 4 1323 208 245 0 20 chr4 96846491 96846541 -58783579 + L2b LINE L2 3321 3369 -6 4 1323 338 212 0 0 chr4 96847076 96847142 -58782978 - B3A SINE B2 -132 66 1 4 1323 678 25 0 0 chr4 96847524 96847604 -58782516 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1323 465 19 0 0 chr4 96847617 96847671 -58782449 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1323 3515 72 0 2 chr4 96849650 96850098 -58780022 + L1_Mus2 LINE L1 6120 6566 0 4 1323 1657 252 24 17 chr4 96850426 96850841 -58779279 + Lx5 LINE L1 6601 7018 -32 4 1323 286 305 50 17 chr4 96851124 96851244 -58778876 - MIR SINE MIR -31 231 108 4 1323 396 0 0 0 chr4 96852241 96852285 -58777835 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1323 324 223 65 46 chr4 96853055 96853163 -58776957 + Lx7 LINE L1 6931 7040 -656 4 1323 3613 237 75 17 chr4 96853190 96853420 -58776700 - Lx5 LINE L1 -2 7048 6807 4 1323 312 27 0 0 chr4 96853420 96853457 -58776663 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 4 1323 3613 237 75 17 chr4 96853457 96854176 -58775944 - Lx5 LINE L1 -244 6806 6045 4 1323 3959 174 28 35 chr4 96854176 96854946 -58775174 + Lx5 LINE L1 5051 5820 -57 4 1323 1390 79 11 0 chr4 96854946 96855136 -58774984 + B2_Mm1t SINE B2 2 193 0 4 1323 3959 170 32 44 chr4 96855136 96855370 -58774750 + Lx5 LINE L1 5821 6055 -995 4 1323 1274 235 44 113 chr4 96855368 96855502 -58774618 + Lx7 LINE L1 7029 7161 -535 4 1323 3001 32 0 0 chr4 96855502 96855848 -58774272 - ORR1A0 LTR MaLR 0 346 1 4 1323 1274 235 44 113 chr4 96855848 96856299 -58773821 + Lx7 LINE L1 7162 7574 -122 4 1323 647 91 0 20 chr4 96856299 96856400 -58773720 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 4 1323 1010 76 7 59 chr4 96856402 96856555 -58773565 - B1_Mus1 SINE Alu -3 145 1 4 1323 391 212 50 0 chr4 96856561 96856660 -58773460 + Lx7 LINE L1 7579 7682 -14 4 1323 396 40 0 0 chr4 96857098 96857148 -58772972 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1323 225 0 0 0 chr4 96857148 96857173 -58772947 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1323 419 52 17 0 chr4 96857173 96857230 -58772890 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1323 271 152 33 17 chr4 96857820 96857880 -58772240 + MER2 DNA MER2_type 103 163 -182 4 1323 307 143 0 60 chr4 96858225 96858292 -58771828 + Lx7 LINE L1 7627 7689 -7 4 1323 399 200 56 26 chr4 96858480 96858596 -58771524 + RLTR11A LTR ERVK 1 118 -335 4 1323 453 291 24 24 chr4 96858593 96858804 -58771316 + BGLII_B LTR ERVK 204 414 -27 4 1323 278 106 21 0 chr4 96859028 96859075 -58771045 + (TATG)n Simple_repeat Simple_repeat 1 48 0 4 1323 30 27 0 0 chr4 96859078 96859115 -58771005 + AT_rich Low_complexity Low_complexity 1 37 0 4 1323 332 311 125 54 chr4 96859116 96859377 -58770743 + L1ME1 LINE L1 5674 5954 -225 4 1323 207 0 0 0 chr4 96859377 96859400 -58770720 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1323 332 311 125 54 chr4 96859400 96859451 -58770669 + L1ME1 LINE L1 5955 6008 -171 4 1323 273 136 0 43 chr4 96860872 96860941 -58769179 + (CATA)n Simple_repeat Simple_repeat 4 69 0 4 1323 663 13 0 0 chr4 96860941 96861017 -58769103 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 1323 282 258 0 15 chr4 96861515 96861582 -58768538 - MTEa LTR MaLR 0 379 314 4 1323 285 98 0 0 chr4 96861583 96861624 -58768496 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 4 1323 183 156 0 0 chr4 96862008 96862040 -58768080 + T-rich Low_complexity Low_complexity 1 32 0 4 1324 186 43 0 0 chr4 96863002 96863025 -58767095 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 4 1324 546 193 9 9 chr4 96863084 96863199 -58766921 - Lx9 LINE L1 -497 7147 7033 4 1324 1813 262 137 43 chr4 96863211 96864114 -58766006 - Lx9 LINE L1 -985 6659 5672 4 1324 1100 73 0 0 chr4 96864114 96864250 -58765870 - B1_Mus1 SINE Alu -11 137 2 4 1324 1203 216 67 44 chr4 96864250 96864418 -58765702 - Lx9 LINE L1 -211 5636 5452 4 1324 248 256 108 32 chr4 96864452 96864545 -58765575 - L1_Rod LINE L1 -6937 235 136 4 1324 2293 235 41 12 chr4 96864630 96865146 -58764974 - RMER5 LTR ERV1 0 534 4 4 1324 455 333 27 0 chr4 96865146 96865273 -58764847 + MTEa-int LTR MaLR 1441 1571 -9 4 1324 832 296 89 58 chr4 96865276 96865449 -58764671 + MTEa LTR MaLR 1 184 -195 4 1324 4352 22 0 0 chr4 96865449 96865942 -58764178 + MT2_Mm LTR ERVL 1 493 0 4 1324 832 296 89 58 chr4 96865942 96866127 -58763993 + MTEa LTR MaLR 185 370 -9 4 1324 6429 84 87 19 chr4 96866513 96867488 -58762632 - Lx3_Mus LINE L1 0 7009 5969 4 1324 452 297 88 15 chr4 96867534 96867807 -58762313 + L1MC2 LINE L1 5911 6203 -141 4 1324 21 36 0 0 chr4 96867898 96867926 -58762194 + AT_rich Low_complexity Low_complexity 1 28 0 4 1324 828 264 6 0 chr4 96867952 96868130 -58761990 - B3A SINE B2 -18 180 2 4 1324 1253 204 0 0 chr4 96868136 96868361 -58761759 + URR1B DNA MER1_type 1 225 0 4 1324 225 276 69 0 chr4 96868384 96868442 -58761678 + ID4 SINE ID 4 65 -18 4 1324 209 276 0 0 chr4 96868624 96868682 -58761438 + GA-rich Low_complexity Low_complexity 2 59 0 4 1324 201 303 188 68 chr4 96869418 96869535 -58760585 + MER5A DNA MER1_type 1 131 -58 4 1324 271 164 0 113 chr4 96869544 96869584 -58760536 + B4 SINE B4 2 37 -255 4 1324 2783 93 18 5 chr4 96869584 96869982 -58760138 - RLTR9D LTR ERVK 0 403 1 4 1324 271 164 0 113 chr4 96869982 96870003 -58760117 + B4 SINE B4 38 56 -236 4 1324 566 306 136 10 chr4 96870319 96870517 -58759603 + B4A SINE B4 70 292 0 4 1324 234 0 0 0 chr4 96870549 96870575 -58759545 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1324 1001 281 62 41 chr4 96871209 96871550 -58758570 + ORR1E LTR MaLR 1 348 -11 4 1324 768 307 39 121 chr4 96871768 96872149 -58757971 - MTEa LTR MaLR -3 376 27 4 1324 1696 192 104 10 chr4 96872890 96873275 -58756845 + MTC LTR MaLR 1 421 0 5 1324 212 171 0 0 chr4 96874824 96874865 -58755255 + A-rich Low_complexity Low_complexity 1 41 0 5 1324 311 285 71 22 chr4 96875088 96875271 -58754849 - L1MB3 LINE L1 0 6183 5992 5 1324 245 0 89 0 chr4 96875283 96875328 -58754792 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1324 592 53 0 0 chr4 96875328 96875403 -58754717 - B1_Mm SINE Alu -8 139 65 5 1324 247 225 84 36 chr4 96875984 96876067 -58754053 - MLT1A1 LTR MaLR -4 404 318 5 1324 405 153 0 0 chr4 96876760 96876832 -58753288 + CT-rich Low_complexity Low_complexity 2 73 0 5 1324 479 47 0 0 chr4 96876833 96876897 -58753223 - B1_Mur4 SINE Alu 0 150 87 5 1324 195 42 0 0 chr4 96877296 96877320 -58752800 + (GAA)n Simple_repeat Simple_repeat 2 25 0 5 1324 216 257 14 0 chr4 96877652 96877726 -58752394 + A-rich Low_complexity Low_complexity 3 77 0 5 1324 240 59 0 0 chr4 96877854 96877888 -58752232 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1324 2984 77 2 10 chr4 96878160 96878566 -58751554 - L1Md_F2 LINE L1 -11 6571 6169 5 1324 453 169 0 0 chr4 96879028 96879111 -58751009 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1324 356 302 125 73 chr4 96879204 96879493 -58750627 - MLT1G1 LTR MaLR -2 577 274 5 1324 6906 86 4 28 chr4 96880975 96882270 -58747850 - L1_Mus1 LINE L1 -1 6566 5294 5 1324 462 30 0 43 chr4 96882270 96882340 -58747780 - L1Md_T LINE L1 -3 6579 6513 5 1324 3818 109 3 40 chr4 96882340 96882360 -58747760 - L1_Mus1 LINE L1 -590 5293 5274 5 1324 555 282 119 5 chr4 96883621 96883990 -58746130 + L1MA9 LINE L1 5710 6109 -59 5 1324 206 100 0 0 chr4 96884054 96884084 -58746036 + (CATG)n Simple_repeat Simple_repeat 3 32 0 5 1324 291 203 0 0 chr4 96884084 96884148 -58745972 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1324 633 267 11 11 chr4 96884148 96884326 -58745794 - B3A SINE B2 -16 182 5 5 1324 205 256 0 0 chr4 96884555 96884594 -58745526 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1324 268 306 35 0 chr4 96884949 96885034 -58745086 - LTR40b LTR ERVL -198 264 177 5 1324 243 354 94 0 chr4 96885093 96885189 -58744931 - LTR40a LTR ERVL -283 236 132 5 1324 471 63 0 0 chr4 96885682 96885745 -58744375 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1324 229 314 80 56 chr4 96885850 96886012 -58744108 - MIR3 SINE MIR -41 167 2 5 1324 453 36 0 0 chr4 96886166 96886221 -58743899 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 5 1324 758 214 224 15 chr4 96887817 96888151 -58741969 - MTC LTR MaLR -8 411 8 5 1324 230 281 0 63 chr4 96888189 96888284 -58741836 + MIR SINE MIR 136 224 -38 5 1324 189 0 0 0 chr4 96888548 96888569 -58741551 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 5 1324 211 372 12 0 chr4 96889207 96889293 -58740827 + RSINE1 SINE B4 7 93 -72 5 1324 24 32 0 0 chr4 96889406 96889437 -58740683 + AT_rich Low_complexity Low_complexity 1 31 0 5 1324 2860 101 72 18 chr4 96889806 96890252 -58739868 - L1_Mus4 LINE L1 -6 6630 6161 5 1324 5541 137 18 18 chr4 96890254 96891510 -58738610 + L1_Mus4 LINE L1 4881 6149 -487 5 1324 422 314 84 18 chr4 96891845 96892072 -58738048 + Lx8 LINE L1 6937 7178 -295 5 1324 18233 167 23 4 chr4 96892058 96894557 -58735563 + L1_Mm LINE L1 2177 4731 -1152 5 1324 282 29 0 0 chr4 96894557 96894592 -58735528 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1324 18233 167 23 4 chr4 96894592 96895479 -58734641 + L1_Mm LINE L1 4732 5628 -255 5 1324 594 0 0 0 chr4 96895486 96895552 -58734568 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1324 1282 201 14 151 chr4 96895605 96895753 -58734367 + RMER15 LTR ERVL 1 132 -443 5 1324 1162 55 14 0 chr4 96895753 96895899 -58734221 + B1_Mus1 SINE Alu 1 148 0 5 1324 1282 201 14 151 chr4 96895899 96895939 -58734181 + RMER15 LTR ERVL 133 138 -437 5 1324 657 0 0 0 chr4 96895939 96896012 -58734108 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 5 1324 1282 201 14 151 chr4 96896012 96896173 -58733947 + RMER15 LTR ERVL 139 303 -272 5 1324 618 129 0 11 chr4 96896173 96896267 -58733853 - Lx2A LINE L1 -1243 5765 5673 5 1324 307 227 13 0 chr4 96896467 96896542 -58733578 + Lx9 LINE L1 7381 7456 -188 5 1324 243 0 0 0 chr4 96896544 96896571 -58733549 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1324 29 28 0 0 chr4 96896714 96896750 -58733370 + AT_rich Low_complexity Low_complexity 1 36 0 5 1324 241 293 158 0 chr4 96896787 96896869 -58733251 - MER44A DNA MER2_type -244 95 1 5 1324 650 304 75 25 chr4 96899385 96899823 -58730297 + L1MB8 LINE L1 4595 5054 -1092 5 1324 518 284 159 22 chr4 96899964 96900569 -58729551 + L1MB8 LINE L1 5270 5941 -238 5 1324 828 181 58 6 chr4 96900827 96900999 -58729121 - Lx4B LINE L1 -4 7054 6874 5 1324 240 59 0 0 chr4 96901706 96901740 -58728380 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1324 189 0 0 0 chr4 96902116 96902137 -58727983 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1324 230 364 18 9 chr4 96902239 96902350 -58727770 - MER117 DNA MER1_type -81 116 5 5 1324 21 0 0 0 chr4 96902494 96902515 -58727605 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 184 157 18 105 chr4 96902611 96902668 -58727452 + L3 LINE CR1 1391 1442 -3047 5 1324 321 26 0 0 chr4 96904372 96904410 -58725710 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1324 247 316 209 2 chr4 96904556 96904727 -58725393 + MIRb SINE MIR 5 221 -47 5 1324 201 386 60 74 chr4 96905621 96905906 -58724214 - L2c LINE L2 -171 3216 2936 5 1324 183 347 56 0 chr4 96906358 96906430 -58723690 - L2c LINE L2 -1024 2395 2320 5 1324 207 0 0 0 chr4 96907006 96907029 -58723091 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1324 4497 78 42 2 chr4 96907169 96907789 -58722331 - RLTR13C1 LTR ERVK -338 645 1 5 1324 2831 223 100 13 chr4 96907870 96908193 -58721927 + RMER19A LTR ERVK 1 374 -363 5 1324 6228 77 10 92 chr4 96908193 96909165 -58720955 + RLTR13B1 LTR ERVK 1 893 0 5 1324 2831 223 100 13 chr4 96909165 96909519 -58720601 + RMER19A LTR ERVK 375 736 -1 5 1324 438 332 89 30 chr4 96909686 96910214 -58719906 - L1ME3B LINE L1 -297 5943 5385 5 1324 281 331 146 42 chr4 96910303 96910495 -58719625 + LTR16A1 LTR ERVL 171 382 -74 5 1324 213 65 0 0 chr4 96910761 96910792 -58719328 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1324 1384 78 91 9 chr4 96910806 96911025 -58719095 - L1Md_F2 LINE L1 -8 6574 6338 5 1324 2000 53 0 8 chr4 96911025 96911274 -58718846 + L1Md_F2 LINE L1 6131 6377 -205 5 1324 9909 158 19 86 chr4 96911343 96911945 -58718175 + Lx LINE L1 3905 4506 -1371 5 1324 989 122 0 19 chr4 96911945 96912098 -58718022 + B2_Mm2 SINE B2 2 152 -43 5 1324 281 89 22 0 chr4 96912098 96912143 -58717977 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 5 1324 9909 139 13 54 chr4 96912148 96913813 -58716307 + Lx LINE L1 4507 6196 -458 5 1324 366 300 38 8 chr4 96914003 96914134 -58715986 - Lx9 LINE L1 -826 6818 6684 5 1324 839 274 55 4 chr4 96914174 96914427 -58715693 + L1_Rod LINE L1 3870 4135 -1712 5 1324 180 111 0 0 chr4 96914432 96914459 -58715661 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1324 37 93 0 0 chr4 96914471 96914578 -58715542 + AT_rich Low_complexity Low_complexity 1 107 0 5 1324 565 177 130 54 chr4 96914615 96914800 -58715320 + L1_Mur3 LINE L1 3406 3604 -2276 5 1324 39 74 0 0 chr4 96914807 96914888 -58715232 + AT_rich Low_complexity Low_complexity 1 81 0 5 1324 323 139 71 51 chr4 96914891 96915027 -58715093 + L1_Mur3 LINE L1 5220 5354 -526 5 1324 3392 196 55 10 chr4 96915035 96915721 -58714399 + Lx7 LINE L1 6604 7320 -376 5 1324 1569 281 113 15 chr4 96915730 96916448 -58713672 + L1M2 LINE L1 4148 4935 -1208 5 1324 388 35 17 17 chr4 96916574 96916633 -58713487 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1324 624 203 164 37 chr4 96916792 96916981 -58713139 - B3 SINE B2 -3 213 1 5 1324 561 331 205 12 chr4 96916994 96917321 -58712799 + RMER15 LTR ERVL 39 428 -147 5 1324 1917 192 40 42 chr4 96917321 96917381 -58712739 + Lx4B LINE L1 6316 6377 -681 5 1324 279 0 0 0 chr4 96917381 96917412 -58712708 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 1324 1917 204 72 47 chr4 96917412 96918007 -58712113 + Lx4B LINE L1 6352 7041 -17 5 1324 431 188 52 0 chr4 96918035 96918131 -58711989 + RMER15 LTR ERVL 412 512 -63 5 1324 225 128 0 0 chr4 96918161 96918208 -58711912 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1324 548 356 34 19 chr4 96918271 96918537 -58711583 - B4A SINE B4 -21 271 2 5 1324 414 0 0 0 chr4 96918631 96918677 -58711443 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1324 342 320 10 0 chr4 96918679 96918776 -58711344 - PB1D10 SINE Alu -8 109 12 5 1324 31 26 0 0 chr4 96918910 96918948 -58711172 + AT_rich Low_complexity Low_complexity 1 38 0 5 1324 1625 226 62 16 chr4 96919069 96919456 -58710664 + MTD LTR MaLR 1 405 -14 5 1324 684 298 37 53 chr4 96919895 96920217 -58709903 + Lx8 LINE L1 6971 7287 -186 5 1324 260 273 20 108 chr4 96920792 96920878 -58709242 + Lx9 LINE L1 5800 5889 -1755 5 1324 1662 148 32 67 chr4 96920878 96921219 -58708901 - ORR1A4 LTR MaLR 0 329 1 5 1324 260 273 20 108 chr4 96921219 96921280 -58708840 + Lx9 LINE L1 5887 5934 -1539 5 1324 473 277 69 0 chr4 96921244 96921446 -58708674 - L1_Mur3 LINE L1 -525 5355 5140 5 1324 268 339 45 0 chr4 96921778 96921890 -58708230 + MIR3 SINE MIR 92 208 0 5 1324 21 0 0 0 chr4 96922063 96922084 -58708036 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 229 246 14 0 chr4 96922475 96922544 -58707576 + L1MB7 LINE L1 6095 6164 -20 5 1324 354 331 52 19 chr4 96922642 96922796 -58707324 - RSINE1 SINE B4 0 165 7 5 1324 488 270 83 32 chr4 96923361 96923518 -58706602 + MER20 DNA MER1_type 49 213 -6 5 1324 186 307 53 79 chr4 96923669 96923821 -58706299 - L2a LINE L2 0 3426 3279 5 1324 640 134 134 0 chr4 96924500 96924634 -58705486 + Lx9 LINE L1 7492 7643 -1 5 1324 22 56 0 0 chr4 96925373 96925409 -58704711 + AT_rich Low_complexity Low_complexity 1 36 0 5 1324 315 384 35 11 chr4 96926025 96926199 -58703921 + LTR16B1 LTR ERVL 13 190 -290 5 1324 280 377 6 12 chr4 96926334 96926495 -58703625 - ERVL-E-int LTR ERVL -2255 3412 3253 5 1324 21 0 0 0 chr4 96927465 96927486 -58702634 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 582 15 0 0 chr4 96928099 96928166 -58701954 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1324 189 0 0 0 chr4 96928556 96928577 -58701543 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1324 24 32 0 0 chr4 96928699 96928730 -58701390 + AT_rich Low_complexity Low_complexity 1 31 0 6 1324 409 309 87 100 chr4 96928963 96929262 -58700858 - MLT1B LTR MaLR -18 372 53 6 1324 272 323 75 53 chr4 96929591 96929761 -58700359 - MIRc SINE MIR -99 177 2 6 1324 445 296 22 22 chr4 96929808 96929943 -58700177 - MLT1B LTR MaLR 0 390 256 6 1324 546 181 0 0 chr4 96929999 96930104 -58700016 + CT-rich Low_complexity Low_complexity 2 106 0 6 1324 880 99 0 21 chr4 96930522 96930666 -58699454 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 6 1324 636 335 14 5 chr4 96930682 96930901 -58699219 - ID_B1 SINE B4 -1 223 3 6 1324 308 312 0 11 chr4 96931360 96931454 -58698666 + ID_B1 SINE B4 3 95 -129 6 1324 234 296 37 12 chr4 96933257 96933339 -58696781 + MIR SINE MIR 84 167 -95 6 1324 1615 187 14 158 chr4 96934856 96935376 -58694744 + BGLII_A LTR ERVK 1 445 0 6 1324 384 364 107 15 chr4 96935862 96936320 -58693800 - L1MEg LINE L1 -2748 3398 2899 6 1324 544 346 156 6 chr4 96936387 96936918 -58693202 - L1MEg LINE L1 -3313 2833 2223 6 1324 195 42 0 0 chr4 96937016 96937040 -58693080 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 6 1324 8430 139 22 5 chr4 96937044 96939188 -58690932 - L1_Mus4 LINE L1 -13 6623 4441 6 1324 7134 117 8 7 chr4 96939187 96940306 -58689814 + L1_Mus4 LINE L1 3334 4453 -1430 6 1324 390 305 125 44 chr4 96940383 96940726 -58689394 - L1MEg LINE L1 -4219 2023 1653 6 1324 207 0 0 0 chr4 96940753 96940776 -58689344 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 6 1324 230 290 21 0 chr4 96940777 96940870 -58689250 - Lx5 LINE L1 -13 7037 6943 6 1324 915 358 79 9 chr4 96940902 96941435 -58688685 - Lx8 LINE L1 -30 7443 6874 6 1324 30 45 0 0 chr4 96942064 96942108 -58688012 + AT_rich Low_complexity Low_complexity 1 44 0 6 1324 183 186 0 0 chr4 96942120 96942163 -58687957 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1324 323 130 0 13 chr4 96942164 96942242 -58687878 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1324 571 304 6 6 chr4 96942242 96942401 -58687719 - B3A SINE B2 -38 160 2 6 1324 391 351 52 23 chr4 96942497 96942669 -58687451 - MLT1A LTR MaLR -6 368 192 6 1324 2160 186 85 35 chr4 96943837 96944355 -58685765 + Lx9 LINE L1 7101 7644 0 6 1324 584 246 88 14 chr4 96945520 96945668 -58684452 + MER121 Unknown Unknown 94 252 -160 6 1324 213 384 96 12 chr4 96946278 96946444 -58683676 + MIRb SINE MIR 24 203 -65 6 1324 449 241 62 25 chr4 96946661 96946823 -58683297 - MER117 DNA MER1_type 0 197 30 6 1324 212 157 39 0 chr4 96948952 96949003 -58681117 + CT-rich Low_complexity Low_complexity 3 55 0 6 1324 435 19 0 0 chr4 96949665 96949717 -58680403 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1324 988 252 59 37 chr4 96950570 96950842 -58679278 + B4A SINE B4 15 292 0 6 1324 630 355 101 47 chr4 96950895 96951471 -58678649 + MER92B LTR ERV1 28 634 -2 6 1324 28 48 0 0 chr4 96951570 96951612 -58678508 + AT_rich Low_complexity Low_complexity 1 42 0 6 1324 300 300 49 14 chr4 96951827 96951969 -58678151 + Arthur1 DNA Tip100 3839 3945 -2 6 1324 32050 88 6 8 chr4 96952752 96957964 -58672156 + L1Md_F2 LINE L1 387 5585 -298 6 1324 7713 58 2 9 chr4 96957965 96958198 -58671922 + L1Md_F2 LINE L1 5587 5818 -764 6 1324 2557 46 6 27 chr4 96958198 96958532 -58671588 - IAPLTR2b LTR ERVK 0 327 1 6 1324 7713 58 2 9 chr4 96958532 96959288 -58670832 + L1Md_F2 LINE L1 5819 6569 -13 6 1324 237 383 21 0 chr4 96959327 96959468 -58670652 + MIRc SINE MIR 22 165 -103 6 1324 614 276 97 60 chr4 96959593 96959809 -58670311 + B4 SINE B4 69 292 0 6 1324 333 0 0 0 chr4 96959820 96959857 -58670263 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1324 429 30 29 15 chr4 96960384 96960452 -58669668 + (TTA)n Simple_repeat Simple_repeat 2 70 0 6 1324 384 319 106 37 chr4 96961831 96962104 -58668016 - L2 LINE L2 -363 3056 2765 6 1324 189 342 0 52 chr4 96963844 96963921 -58666199 + MIRb SINE MIR 195 267 -1 6 1324 644 292 19 52 chr4 96964444 96964657 -58665463 + B3A SINE B2 3 208 -8 6 1324 237 340 8 99 chr4 96966811 96966932 -58663188 - ORR1D1 LTR MaLR -238 136 27 6 1324 369 388 25 12 chr4 96967065 96967227 -58662893 - MIRb SINE MIR -100 168 5 6 1324 1847 312 53 102 chr4 96968168 96968831 -58661289 - Lx8 LINE L1 -616 6857 6175 6 1324 756 270 71 0 chr4 96968831 96969027 -58661093 - B3 SINE B2 -6 210 1 6 1324 1847 312 53 102 chr4 96969027 96969108 -58661012 - Lx8 LINE L1 -1299 6174 6146 6 1324 249 33 0 0 chr4 96969108 96969138 -58660982 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1324 1847 312 53 102 chr4 96969138 96969412 -58660708 - Lx8 LINE L1 -1328 6145 5891 6 1324 324 0 0 0 chr4 96969412 96969448 -58660672 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1324 303 49 0 0 chr4 96969451 96969492 -58660628 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 6 1324 1847 312 53 102 chr4 96969492 96969794 -58660326 - Lx8 LINE L1 -1583 5890 5595 6 1324 1600 101 260 14 chr4 96969812 96970104 -58660016 + Lx2B LINE L1 6637 7000 0 6 1324 1008 204 26 13 chr4 96970128 96970361 -58659759 - Lx8 LINE L1 -317 5530 5295 6 1324 411 171 0 0 chr4 96970361 96970437 -58659683 + CT-rich Low_complexity Low_complexity 3 78 0 6 1324 15019 117 75 2 chr4 96970453 96972275 -58657845 - L1_Mus2 LINE L1 0 6566 4741 6 1324 200 35 35 0 chr4 96972275 96972304 -58657816 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1324 15019 168 161 5 chr4 96972304 96974201 -58655919 - L1_Mus2 LINE L1 -1146 4740 2364 6 1324 270 0 0 0 chr4 96974201 96974231 -58655889 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1324 15019 168 161 5 chr4 96974231 96974360 -58655760 - L1_Mus2 LINE L1 -3523 2363 2229 6 1324 2882 184 50 117 chr4 96974327 96975608 -58654512 - L1Md_F LINE L1 -2418 1399 151 6 1324 21 0 0 0 chr4 96975609 96975630 -58654490 + AT_rich Low_complexity Low_complexity 1 21 0 6 1324 302 238 0 35 chr4 96975630 96975717 -58654403 - L1M2 LINE L1 -787 5356 5273 6 1324 1280 226 38 105 chr4 96975736 96976217 -58653903 - L1_Rod LINE L1 -801 5342 4823 6 1324 1645 205 75 0 chr4 96976225 96976610 -58653510 - L1_Rod LINE L1 -3603 2244 1831 6 1324 953 207 33 12 chr4 96976612 96976857 -58653263 - L1_Rod LINE L1 -4304 1543 1294 6 1324 225 242 30 15 chr4 96976857 96976924 -58653196 - MLT1B LTR MaLR -269 121 54 6 1324 2483 248 21 45 chr4 96976925 96977606 -58652514 - L1_Rod LINE L1 -6383 1225 562 6 1324 238 200 33 0 chr4 96977959 96978019 -58652101 - L1_Rod LINE L1 -7063 545 484 6 1324 1000 263 116 3 chr4 96978098 96978460 -58651660 - L1_Mur3 LINE L1 -2069 3811 3409 6 1324 756 98 49 0 chr4 96978451 96978573 -58651547 - Lx LINE L1 -619 6035 5908 6 1324 3435 124 64 36 chr4 96978573 96979184 -58650936 + Lx LINE L1 6022 6649 -5 6 1324 1045 234 73 10 chr4 96979215 96979600 -58650520 - L1_Mur3 LINE L1 -2465 3415 3007 6 1324 1906 248 104 101 chr4 96980152 96981046 -58649074 - L1_Mur3 LINE L1 -2832 3048 2152 6 1324 356 193 0 0 chr4 96981047 96981130 -58648990 - L1_Mur3 LINE L1 -3933 1947 1865 6 1324 3029 157 165 78 chr4 96981165 96982001 -58648119 - L1_Mur3 LINE L1 -1738 4142 3234 6 1324 39485 28 0 6 chr4 96981974 96988046 -58642074 - L1Md_T LINE L1 -1 6581 553 6 1324 6609 174 57 23 chr4 96988046 96988183 -58641937 - L1_Mur3 LINE L1 -2605 3275 3130 6 1324 306 67 0 0 chr4 96988183 96988228 -58641892 + (CTTG)n Simple_repeat Simple_repeat 2 46 0 6 1324 6609 174 57 23 chr4 96988228 96989559 -58640561 - L1_Mur3 LINE L1 -2751 3129 1759 6 1324 198 0 0 0 chr4 96989605 96989627 -58640493 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1324 930 105 130 7 chr4 96989627 96989781 -58640339 - B2_Mm2 SINE B2 -21 174 2 6 1324 1261 294 62 25 chr4 96989785 96990347 -58639773 - L1_Mur3 LINE L1 -6699 1029 447 6 1324 200 249 0 56 chr4 96990631 96990685 -58639435 - MIRc SINE MIR -102 160 114 6 1324 827 214 146 42 chr4 96990782 96991115 -58639005 - ORR1D1 LTR MaLR -8 366 1 6 1324 1700 282 48 11 chr4 96991137 96992162 -58637958 - Lx6 LINE L1 0 7460 6117 6 1324 764 304 18 102 chr4 96992182 96992633 -58637487 - BGLII_B LTR ERVK -27 414 2 6 1324 9582 229 46 11 chr4 96992638 96992872 -58637248 - Lx6 LINE L1 -1389 6071 5827 6 1324 212 0 0 35 chr4 96992872 96992901 -58637219 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 165 9582 194 100 11 chr4 96992901 96995166 -58634954 - Lx6 LINE L1 -54 5826 3362 6 1325 307 338 72 14 chr4 96995710 96995848 -58634272 - MIRc SINE MIR -115 153 8 6 1325 204 40 0 0 chr4 96997001 96997026 -58633094 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1325 343 102 0 0 chr4 96997026 96997075 -58633045 + MMERVK10C-int LTR ERVK 7533 7581 0 6 1325 293 100 0 0 chr4 96997106 96997146 -58632974 + RLTR10E LTR ERVK 1 40 -271 6 1325 566 351 129 29 chr4 96997184 96997411 -58632709 + L2 LINE L2 2158 2420 -999 6 1325 4266 133 39 18 chr4 96997411 96998151 -58631969 - RMER6A LTR ERVK 0 756 1 6 1325 566 351 129 29 chr4 96998151 96998372 -58631748 + L2 LINE L2 2421 2651 -768 6 1325 2571 170 22 43 chr4 96998497 96999007 -58631113 - RLTR19 LTR ERVK 0 499 1 6 1325 713 257 71 45 chr4 96999206 96999516 -58630604 - Lx9 LINE L1 -9 7635 7318 6 1325 1867 231 56 29 chr4 96999505 96999991 -58630129 - Lx9 LINE L1 -498 7146 6648 6 1325 675 275 52 0 chr4 97000000 97000193 -58629927 - Lx9 LINE L1 -1006 6638 6436 1 1325 686 324 125 30 chr4 97000802 97001209 -58628911 - MT2A LTR ERVL -87 446 1 2 1325 703 250 187 12 chr4 97001652 97001903 -58628217 - Lx6 LINE L1 -7 7453 7159 3 1325 615 223 88 69 chr4 97001999 97002216 -58627904 + ID_B1 SINE B4 3 223 -1 4 1325 404 247 0 49 chr4 97002357 97002459 -58627661 + BC1_Mm scRNA scRNA 3 99 -53 5 1325 271 269 70 53 chr4 97003957 97004071 -58626049 + MTD LTR MaLR 1 116 -303 6 1325 398 301 130 35 chr4 97004170 97004370 -58625750 - MIR SINE MIR -3 259 41 7 1325 297 278 11 22 chr4 97004502 97004594 -58625526 + GA-rich Low_complexity Low_complexity 2 92 0 8 1325 229 109 36 0 chr4 97005088 97005143 -58624977 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 9 1325 1469 128 134 0 chr4 97005143 97005448 -58624672 - L1_Mur1 LINE L1 -1147 4739 4394 1 1325 4518 137 3 3 chr4 97005447 97006208 -58623912 + Lx LINE L1 5563 6323 -331 1 1325 1958 136 6 19 chr4 97006209 97006524 -58623596 - RLTR10E LTR ERVK 0 311 1 1 1325 3909 120 8 11 chr4 97006524 97007211 -58622909 - IAPEY3-int LTR ERVK 0 7680 6965 1 1325 1303 121 112 0 chr4 97007211 97007435 -58622685 - IAP-d-int LTR ERVK -1287 5255 5007 1 1325 327 158 0 0 chr4 97007435 97007492 -58622628 - IAP-d-int LTR ERVK -6039 503 447 1 1325 437 304 24 29 chr4 97007511 97007839 -58622281 - IAPEY3-int LTR ERVK -5481 1061 847 1 1325 2420 62 154 0 chr4 97007934 97008304 -58621816 - RLTR10-int LTR ERVK -995 992 566 1 1325 257 330 0 21 chr4 97008304 97008349 -58621771 + T-rich Low_complexity Low_complexity 48 92 0 1 1325 956 53 40 34 chr4 97008349 97008526 -58621594 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 1 1325 257 330 0 21 chr4 97008526 97008573 -58621547 + T-rich Low_complexity Low_complexity 2 47 0 1 1325 1246 74 3 2 chr4 97008615 97008794 -58621326 - RLTR10-int LTR ERVK -7314 267 39 1 1325 1984 142 3 10 chr4 97008803 97009116 -58621004 - RLTR10E LTR ERVK 0 311 1 1 1325 1725 153 63 3 chr4 97009116 97009418 -58620702 + Lx LINE L1 6319 6638 -16 1 1325 268 308 142 19 chr4 97009854 97010016 -58620104 + MIRb SINE MIR 34 215 -53 1 1325 270 0 0 0 chr4 97010431 97010461 -58619659 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1325 21 57 0 0 chr4 97012197 97012232 -58617888 + AT_rich Low_complexity Low_complexity 1 35 0 2 1325 1950 215 19 17 chr4 97013815 97014293 -58615827 - L1_Rod LINE L1 -1676 4171 3693 2 1325 3184 289 59 41 chr4 97014285 97015535 -58614585 - Lx5 LINE L1 0 7050 5778 2 1325 3928 239 34 18 chr4 97015527 97016542 -58613578 - Lx5 LINE L1 -4 7046 6016 2 1325 1609 139 9 37 chr4 97016535 97016863 -58613257 + Lx5 LINE L1 3855 4173 -1704 2 1325 2893 49 5 52 chr4 97016866 97017273 -58612847 - RLTR10 LTR ERVK -2 388 1 2 1325 16169 30 4 1 chr4 97017273 97019241 -58610879 - RLTR10-int LTR ERVK -1 1986 13 2 1325 2893 49 5 52 chr4 97019289 97019696 -58610424 - RLTR10 LTR ERVK -2 388 1 2 1325 7563 169 50 17 chr4 97019724 97020476 -58609644 + Lx5 LINE L1 4176 4935 -942 2 1325 192 77 0 0 chr4 97020476 97020502 -58609618 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1325 7563 170 47 17 chr4 97020502 97021528 -58608592 + Lx5 LINE L1 4936 6010 -1040 2 1325 1994 197 44 58 chr4 97021543 97022040 -58608080 - L1_Mur3 LINE L1 -89 5791 5302 2 1325 1543 211 8 145 chr4 97022040 97022544 -58607576 + Lx5 LINE L1 6560 6994 -6 2 1325 3424 176 37 11 chr4 97022557 97023320 -58606800 - L1_Mur3 LINE L1 -563 5317 4535 2 1325 1728 247 53 45 chr4 97023308 97024153 -58605967 - L1_Mur3 LINE L1 -1854 3993 3149 2 1325 24 53 0 0 chr4 97024336 97024374 -58605746 + AT_rich Low_complexity Low_complexity 1 38 0 3 1325 276 257 0 66 chr4 97024885 97025030 -58605090 + GA-rich Low_complexity Low_complexity 1 135 0 3 1325 180 212 0 0 chr4 97025934 97026000 -58604120 + CT-rich Low_complexity Low_complexity 1 66 0 3 1325 580 150 24 0 chr4 97026074 97026241 -58603879 + (TCTG)n Simple_repeat Simple_repeat 2 172 0 3 1325 298 327 90 30 chr4 97026619 97026786 -58603334 - MLT1B LTR MaLR 0 390 214 3 1325 481 339 83 24 chr4 97027659 97027913 -58602207 + MLT1A0 LTR MaLR 95 363 -2 3 1325 24 32 0 0 chr4 97028018 97028049 -58602071 + AT_rich Low_complexity Low_complexity 1 31 0 3 1325 1031 156 27 0 chr4 97028378 97028564 -58601556 - Lx2 LINE L1 -1 6996 6806 3 1325 347 275 29 7 chr4 97030000 97030090 -58600030 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 3 1325 285 29 0 0 chr4 97030090 97030124 -58599996 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 3 1325 347 275 29 7 chr4 97030124 97030172 -58599948 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 1325 1289 281 72 68 chr4 97030269 97030799 -58599321 - RMER5 LTR ERV1 -2 532 1 4 1325 1282 294 93 13 chr4 97030908 97031380 -58598740 - Lx9 LINE L1 -848 6796 6287 4 1325 478 272 59 89 chr4 97031545 97031868 -58598252 - L1_Mur3 LINE L1 -384 5502 5174 4 1325 271 266 32 8 chr4 97031871 97031996 -58598124 - L1_Mur3 LINE L1 -1454 4426 4299 4 1325 270 247 72 1 chr4 97031994 97032110 -58598010 + L1_Mur3 LINE L1 5523 5658 -633 4 1325 2808 181 16 5 chr4 97032115 97032191 -58597929 + L1_Mur3 LINE L1 5168 5242 -638 4 1325 369 0 0 0 chr4 97032191 97032232 -58597888 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1325 2808 181 16 5 chr4 97032232 97032712 -58597408 + L1_Mur3 LINE L1 5243 5730 -150 4 1325 2238 211 33 10 chr4 97032707 97032744 -58597376 + Lx7 LINE L1 6717 6755 -941 4 1325 189 74 0 0 chr4 97032744 97032771 -58597349 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1325 2238 211 33 10 chr4 97032771 97033255 -58596865 + Lx7 LINE L1 6756 7250 -446 4 1325 469 283 60 77 chr4 97033295 97033600 -58596520 + L1_Mur3 LINE L1 5193 5502 -384 4 1325 24 0 0 0 chr4 97034748 97034772 -58595348 + AT_rich Low_complexity Low_complexity 1 24 0 5 1325 243 0 0 0 chr4 97034772 97034799 -58595321 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1325 1357 306 91 16 chr4 97035020 97035878 -58594242 - L1MA7 LINE L1 -6 6285 5364 5 1325 240 59 0 0 chr4 97036072 97036106 -58594014 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1325 315 0 0 0 chr4 97036673 97036708 -58593412 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1325 488 224 104 0 chr4 97036709 97036834 -58593286 - MTD LTR MaLR -20 399 262 5 1325 5535 88 146 0 chr4 97036834 97037716 -58592404 + L1_Mus3 LINE L1 5616 6626 -12 5 1325 1498 234 52 3 chr4 97037880 97038228 -58591892 + ORR1D2 LTR MaLR 6 370 0 5 1325 578 280 11 25 chr4 97039616 97039808 -58590312 - B3A SINE B2 -15 201 12 5 1325 317 275 160 37 chr4 97039990 97040258 -58589862 - Charlie1a DNA MER1_type -5 1450 1150 5 1325 3165 197 74 8 chr4 97040360 97041080 -58589040 + Lx9 LINE L1 6712 7478 -166 6 1325 937 276 62 85 chr4 97041486 97041874 -58588246 - MTE2a LTR MaLR 0 379 1 6 1325 643 266 21 0 chr4 97042188 97042331 -58587789 - ID_B1 SINE B4 0 224 79 6 1325 548 323 51 61 chr4 97042727 97042941 -58587179 + B3A SINE B2 5 216 0 6 1325 288 313 64 71 chr4 97044122 97044263 -58585857 + MIRc SINE MIR 46 185 -83 6 1325 213 121 0 0 chr4 97044304 97044337 -58585783 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6 1325 420 77 0 0 chr4 97045553 97045618 -58584502 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 6 1325 4297 41 0 0 chr4 97046514 97047021 -58583099 - L1Md_F3 LINE L1 -12 6572 6066 6 1325 933 344 3 40 chr4 97047338 97047641 -58582479 + B4A SINE B4 1 292 0 6 1325 214 254 0 16 chr4 97047746 97047810 -58582310 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 6 1325 192 167 0 0 chr4 97048664 97048712 -58581408 + CT-rich Low_complexity Low_complexity 1 48 0 7 1325 207 254 0 0 chr4 97048711 97048774 -58581346 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1325 1653 260 56 83 chr4 97049017 97049645 -58580475 + L1_Mur3 LINE L1 557 1187 -6541 7 1325 3588 148 43 14 chr4 97049645 97050270 -58579850 + Lx2B LINE L1 6358 7000 0 7 1325 4656 239 114 41 chr4 97050270 97051630 -58578490 + L1_Mur3 LINE L1 1188 2634 -3246 7 1325 765 83 41 0 chr4 97051630 97051775 -58578345 + (TAGA)n Simple_repeat Simple_repeat 3 153 0 7 1325 4656 194 102 56 chr4 97051775 97052169 -58577951 + L1_Mur3 LINE L1 2635 3057 -2823 7 1325 366 80 0 0 chr4 97052169 97052219 -58577901 + (TAG)n Simple_repeat Simple_repeat 2 51 0 7 1325 4656 227 113 42 chr4 97052219 97053359 -58576761 + L1_Mur3 LINE L1 3028 4345 -1532 7 1325 1656 264 39 14 chr4 97053748 97054237 -58575883 + MuRRS4-int LTR ERV1 3533 4033 -1030 7 1325 34846 71 3 1 chr4 97054988 97060731 -58569389 + L1Md_F2 LINE L1 400 6497 -511 7 1325 610 276 146 50 chr4 97062188 97062559 -58567561 - RMER15 LTR ERVL 0 575 48 7 1325 321 291 149 0 chr4 97062685 97062826 -58567294 + HAL1-3A_ME LINE L1 2277 2438 -420 7 1325 614 155 14 27 chr4 97062826 97062972 -58567148 + GA-rich Low_complexity Low_complexity 1 144 0 8 1325 306 0 0 0 chr4 97062972 97063006 -58567114 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 8 1325 262 88 0 0 chr4 97063006 97063040 -58567080 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 8 1325 301 158 0 0 chr4 97063567 97063624 -58566496 + L1_Mur1 LINE L1 679 735 -6249 8 1325 2011 148 24 14 chr4 97063624 97063993 -58566127 + L1_Mur1 LINE L1 2654 3026 -2860 8 1325 414 287 152 27 chr4 97064001 97064358 -58565762 + L1MC3 LINE L1 7381 7744 -41 8 1325 338 242 32 0 chr4 97064365 97064460 -58565660 + L1M2 LINE L1 3092 3189 -2954 8 1325 325 182 0 0 chr4 97064474 97064540 -58565580 - L1M2 LINE L1 -3811 2332 2267 8 1325 812 285 69 93 chr4 97064549 97064984 -58565136 + L1M2 LINE L1 3221 3670 -2473 8 1325 1239 27 0 13 chr4 97064984 97065133 -58564987 + B1_Mus2 SINE Alu 1 147 0 8 1325 812 285 69 93 chr4 97065133 97065406 -58564714 + L1M2 LINE L1 3671 3912 -2231 8 1325 995 243 58 0 chr4 97065516 97065722 -58564398 - Lx6 LINE L1 -1061 6399 6182 8 1325 512 244 91 101 chr4 97065734 97066030 -58564090 + Lx7 LINE L1 5931 6223 -1473 8 1325 238 277 50 50 chr4 97066029 97066211 -58563909 - L1M2 LINE L1 -3844 2299 2118 9 1325 718 191 6 58 chr4 97066285 97066441 -58563679 - B1_Mur3 SINE Alu -1 148 1 9 1325 510 298 122 56 chr4 97066634 97067028 -58563092 + L1MA4 LINE L1 5651 6070 -230 9 1325 21 57 0 0 chr4 97067150 97067185 -58562935 + AT_rich Low_complexity Low_complexity 1 35 0 9 1325 335 132 0 26 chr4 97067205 97067283 -58562837 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 9 1325 29 70 0 0 chr4 97067361 97067418 -58562702 + AT_rich Low_complexity Low_complexity 1 57 0 9 1325 1091 232 133 105 chr4 97069553 97069952 -58560168 + MTD LTR MaLR 8 417 -2 9 1325 2890 38 3 11 chr4 97070615 97070964 -58559156 + ORR1A0 LTR MaLR 1 346 0 9 1325 255 355 57 25 chr4 97071346 97071505 -58558615 - MIR SINE MIR -15 247 84 9 1325 1161 68 0 0 chr4 97071953 97072099 -58558021 + B1_Mus1 SINE Alu 2 147 -1 9 1325 253 64 20 41 chr4 97072099 97072148 -58557972 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1325 704 274 6 6 chr4 97072984 97073153 -58556967 - MLT1B LTR MaLR 0 390 222 1 1325 1650 120 33 0 chr4 97073153 97073394 -58556726 - L1VL4 LINE L1 -5947 355 107 1 1325 299 158 53 0 chr4 97073393 97073450 -58556670 + MusHAL1 LINE L1 1622 1681 -1031 1 1325 6071 81 31 31 chr4 97073423 97074352 -58555768 + MusHAL1 LINE L1 1784 2712 0 1 1325 282 255 129 30 chr4 97074445 97074546 -58555574 - B3A SINE B2 -1 197 87 1 1325 378 0 0 0 chr4 97074793 97074835 -58555285 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1325 209 339 0 0 chr4 97075173 97075229 -58554891 - L2b LINE L2 0 3375 3320 1 1325 26 0 0 0 chr4 97075245 97075271 -58554849 + AT_rich Low_complexity Low_complexity 1 26 0 1 1325 243 146 0 0 chr4 97076953 97076994 -58553126 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1325 681 241 124 22 chr4 97077195 97077373 -58552747 + MTD LTR MaLR 12 207 -212 1 1325 523 145 0 0 chr4 97077373 97077456 -58552664 + RMER1C Other Other 1255 1337 -5 1 1325 615 261 80 55 chr4 97077468 97077667 -58552453 + MTD LTR MaLR 201 404 -15 1 1325 493 287 9 9 chr4 97077716 97077832 -58552288 - B1_Mur1 SINE Alu -31 118 3 1 1325 6712 8 0 0 chr4 97077854 97078602 -58551518 - L1Md_T LINE L1 0 6582 5835 1 1325 4227 124 20 5 chr4 97078596 97079237 -58550883 + Lx3C LINE L1 6319 6969 -7 1 1325 23 68 0 0 chr4 97079245 97079289 -58550831 + AT_rich Low_complexity Low_complexity 1 44 0 1 1325 2318 267 87 77 chr4 97079452 97080284 -58549836 - MTC-int LTR MaLR -35 1223 384 1 1325 291 54 0 0 chr4 97081307 97081344 -58548776 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1325 611 208 9 0 chr4 97081344 97081450 -58548670 - B1_Mur1 SINE Alu -9 140 34 1 1325 189 0 0 0 chr4 97081803 97081824 -58548296 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1325 829 267 114 71 chr4 97081925 97082276 -58547844 + ORR1D2 LTR MaLR 5 370 0 1 1325 198 103 0 0 chr4 97082860 97082889 -58547231 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1325 472 353 54 41 chr4 97082961 97083256 -58546864 - MLT1J1 LTR MaLR -145 299 1 1 1325 294 29 0 0 chr4 97083553 97083588 -58546532 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1325 252 0 0 0 chr4 97084364 97084392 -58545728 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1325 426 20 0 0 chr4 97084601 97084652 -58545468 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1325 540 0 0 0 chr4 97084652 97084712 -58545408 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1325 231 23 68 23 chr4 97085078 97085122 -58544998 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1325 321 308 19 95 chr4 97085690 97085848 -58544272 - L2c LINE L2 0 3387 3242 1 1325 247 350 39 10 chr4 97086736 97086800 -58543320 - MER5B DNA MER1_type -59 119 55 1 1325 600 14 0 0 chr4 97086800 97086869 -58543251 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1325 247 350 39 10 chr4 97086869 97086908 -58543212 - MER5B DNA MER1_type -124 54 14 1 1325 519 307 13 32 chr4 97087867 97088022 -58542098 + MLT1A0 LTR MaLR 213 364 -1 1 1325 630 209 0 28 chr4 97088251 97088428 -58541692 + C-rich Low_complexity Low_complexity 5 176 0 1 1325 2759 217 141 14 chr4 97088428 97089143 -58540977 - Lx6 LINE L1 -587 6873 6068 1 1325 1054 264 19 16 chr4 97089140 97089398 -58540722 + Lx6 LINE L1 7026 7284 -176 1 1325 3032 276 70 52 chr4 97089431 97090508 -58539612 - Lx7 LINE L1 -336 7360 6265 1 1325 1883 223 118 14 chr4 97090551 97091138 -58538982 - L1_Mur3 LINE L1 -1310 4570 3923 1 1325 2967 263 120 13 chr4 97091150 97092007 -58538113 + Lx6 LINE L1 6272 7444 -16 1 1325 199 290 29 14 chr4 97092975 97093045 -58537075 + MIR SINE MIR 76 146 -62 1 1325 529 275 67 5 chr4 97093107 97093301 -58536819 + Charlie26a DNA MER1_type 53 258 -67 1 1325 1055 228 87 112 chr4 97094004 97094360 -58535760 - ORR1E LTR MaLR -11 348 2 1 1325 254 367 54 41 chr4 97094863 97095077 -58535043 - L2c LINE L2 -2 3373 3155 1 1325 486 49 0 0 chr4 97095966 97096027 -58534093 + (ATG)n Simple_repeat Simple_repeat 3 63 0 1 1325 206 200 167 0 chr4 97096951 97097011 -58533109 - MIRc SINE MIR -9 259 190 1 1325 219 326 43 0 chr4 97097470 97097562 -58532558 + MIR3 SINE MIR 83 178 -30 1 1325 193 250 90 63 chr4 97098140 97098251 -58531869 - L2 LINE L2 -565 2854 2741 1 1325 305 314 100 2 chr4 97098363 97098518 -58531602 - MIR SINE MIR -14 254 87 1 1325 216 305 160 53 chr4 97099441 97099628 -58530492 - MIRb SINE MIR -28 240 30 1 1325 225 266 92 41 chr4 97099994 97100092 -58530028 - LTR79 LTR ERVL -10 517 415 1 1325 289 301 57 13 chr4 97100592 97100750 -58529370 - L1MA5 LINE L1 -9 6291 6127 1 1325 212 386 85 0 chr4 97101087 97101240 -58528880 - MIRb SINE MIR -28 240 75 1 1325 1038 345 69 11 chr4 97101306 97101784 -58528336 - Lx8 LINE L1 -224 7249 6744 1 1325 1056 319 118 25 chr4 97101783 97102868 -58527252 + Lx8 LINE L1 5533 6738 -735 1 1325 269 214 71 0 chr4 97102873 97102943 -58527177 - L1MA5 LINE L1 -163 6137 6063 1 1325 1587 268 91 28 chr4 97104436 97105051 -58525069 + Lx7 LINE L1 5706 6359 -1337 1 1325 240 175 46 31 chr4 97105250 97105315 -58524805 + GA-rich Low_complexity Low_complexity 4 69 0 1 1325 21 0 0 0 chr4 97105344 97105365 -58524755 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 700 338 25 0 chr4 97105421 97105619 -58524501 + ID_B1 SINE B4 2 204 -20 1 1325 292 232 14 14 chr4 97106708 97106778 -58523342 + ID4 SINE ID 1 70 -13 1 1325 237 368 103 21 chr4 97107132 97107326 -58522794 + L2b LINE L2 3166 3375 0 1 1325 203 283 0 0 chr4 97107389 97107442 -58522678 - MIRb SINE MIR -99 169 117 1 1325 3396 148 40 2 chr4 97109050 97109728 -58520392 - Lx4B LINE L1 -1069 5989 5281 1 1325 1335 223 70 3 chr4 97109735 97110050 -58520070 - Lx3C LINE L1 -2 6974 6639 1 1325 2590 147 25 4 chr4 97110047 97110519 -58519601 + L1_Mur2 LINE L1 4219 4700 -1177 1 1325 934 134 6 25 chr4 97110507 97110668 -58519452 - Lx4B LINE L1 -578 5299 5142 1 1325 1568 246 45 105 chr4 97110668 97111439 -58518681 + RMER19C LTR ERVK 26 735 -2 1 1325 1371 151 92 0 chr4 97111453 97111691 -58518429 - MurERV4_19-int LTR ERVK -5331 449 190 1 1325 469 298 145 10 chr4 97112145 97112352 -58517768 + MIRc SINE MIR 17 251 -17 1 1325 858 168 27 0 chr4 97112547 97112696 -58517424 - URR1A DNA MER1_type 0 226 74 1 1325 185 299 73 15 chr4 97113082 97113150 -58516970 + MIRb SINE MIR 65 136 -132 1 1325 287 373 74 37 chr4 97113663 97113933 -58516187 + L2 LINE L2 2632 2911 -508 1 1325 24 32 0 0 chr4 97114914 97114945 -58515175 + AT_rich Low_complexity Low_complexity 1 31 0 1 1325 504 281 8 16 chr4 97115484 97115607 -58514513 + ID_B1 SINE B4 84 205 -19 1 1325 279 292 118 43 chr4 97115863 97116024 -58514096 - MIRb SINE MIR -101 175 3 1 1325 251 284 0 24 chr4 97116482 97116565 -58513555 + Lx9 LINE L1 7342 7422 -222 1 1325 24 0 0 0 chr4 97116566 97116590 -58513530 + AT_rich Low_complexity Low_complexity 1 24 0 1 1325 188 329 60 24 chr4 97116967 97117051 -58513069 - MIRc SINE MIR -149 119 33 1 1325 183 292 0 0 chr4 97117295 97117367 -58512753 + GA-rich Low_complexity Low_complexity 1 72 0 1 1325 819 31 0 0 chr4 97117771 97117869 -58512251 - L1_Mus1 LINE L1 -132 6435 6338 1 1325 549 207 182 15 chr4 97117873 97118010 -58512110 - ETnERV2-int LTR ERVK -7246 160 1 1 1325 495 202 104 9 chr4 97118026 97118125 -58511995 - RLTR13D1 LTR ERVK 0 806 702 1 1325 621 0 0 0 chr4 97118125 97118194 -58511926 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1325 495 202 104 9 chr4 97118194 97118209 -58511911 - RLTR13D1 LTR ERVK -105 701 682 1 1325 476 247 0 10 chr4 97118196 97118294 -58511826 + RLTR13D1 LTR ERVK 710 806 0 1 1325 317 338 139 35 chr4 97118409 97118697 -58511423 + Lx8 LINE L1 7154 7471 -2 1 1325 486 49 0 0 chr4 97118870 97118931 -58511189 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1325 571 334 33 18 chr4 97119120 97119452 -58510668 + L1M3e LINE L1 46 382 -6648 1 1325 668 271 95 22 chr4 97119898 97120215 -58509905 + Lx9 LINE L1 7261 7600 -44 1 1325 406 314 67 14 chr4 97120357 97120769 -58509351 + L1M3e LINE L1 2184 2609 -4498 1 1325 26 0 0 0 chr4 97120841 97120867 -58509253 + AT_rich Low_complexity Low_complexity 1 26 0 1 1325 22 0 0 0 chr4 97121518 97121540 -58508580 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 2572 212 87 16 chr4 97121543 97122224 -58507896 - Lx9 LINE L1 -179 7465 6737 1 1325 298 266 128 17 chr4 97122222 97122402 -58507718 - L1MC LINE L1 -561 5783 5584 1 1325 22 0 0 0 chr4 97122522 97122544 -58507576 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 211 385 46 0 chr4 97123063 97123194 -58506926 - L2a LINE L2 -317 3109 2972 1 165 6936 56 11 14 chr4 97124257 97125219 -58504901 - L1Md_F2 LINE L1 0 6582 5638 1 1326 224 290 30 61 chr4 97125235 97125334 -58504786 + MIRb SINE MIR 79 174 -94 1 1326 3812 101 75 4 chr4 97125342 97125900 -58504220 + Lx LINE L1 6048 6645 -9 1 1326 1575 42 5 0 chr4 97126574 97126765 -58503355 - B2_Mm1a SINE B2 0 193 2 1 1326 27 0 0 0 chr4 97128737 97128764 -58501356 + AT_rich Low_complexity Low_complexity 1 27 0 1 1326 225 94 0 0 chr4 97129305 97129337 -58500783 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1326 288 0 0 0 chr4 97129337 97129369 -58500751 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1326 339 25 0 0 chr4 97129916 97129956 -58500164 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1326 558 0 0 0 chr4 97129987 97130049 -58500071 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1326 532 244 8 98 chr4 97130419 97130551 -58499569 + B1_Mur1 SINE Alu 1 120 -29 1 1326 2028 28 12 8 chr4 97130555 97130811 -58499309 + L1Md_F3 LINE L1 6327 6583 -1 1 1326 34 0 0 0 chr4 97130935 97130969 -58499151 + AT_rich Low_complexity Low_complexity 1 34 0 1 1326 414 0 0 0 chr4 97131931 97131977 -58498143 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1326 328 359 99 32 chr4 97133408 97133433 -58496687 + L1MC4a LINE L1 5515 5544 -2338 2 1326 419 0 0 19 chr4 97133433 97133485 -58496635 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1326 328 359 99 32 chr4 97133485 97133712 -58496408 + L1MC4a LINE L1 5545 5783 -2099 2 1326 377 315 131 21 chr4 97134203 97134440 -58495680 + L1MC4a LINE L1 6347 6609 -1273 2 1326 345 338 68 55 chr4 97134478 97134794 -58495326 + L1MC4a LINE L1 6771 7099 -943 2 1326 483 63 0 0 chr4 97134794 97134857 -58495263 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2 1326 345 338 68 55 chr4 97134857 97135054 -58495066 + L1MC4a LINE L1 7100 7290 -752 2 1326 3163 49 0 5 chr4 97135128 97135517 -58494603 + L1_Mus1 LINE L1 6181 6567 0 2 1326 479 208 248 0 chr4 97135801 97135950 -58494170 + Lx3C LINE L1 6752 6937 -39 2 1326 439 276 57 29 chr4 97135950 97136125 -58493995 + RMER4A LTR ERVK 245 424 -42 2 1326 3040 209 59 41 chr4 97136125 97137058 -58493062 + MYSERV6-int LTR ERVK 7756 8705 -254 2 1326 896 168 49 5 chr4 97137055 97137259 -58492861 + MYSERV-int LTR ERVK 6338 6550 0 2 1326 368 243 128 34 chr4 97137259 97137408 -58492712 + RLTR15 LTR ERVK 1 163 -196 2 1326 23 0 0 0 chr4 97137689 97137712 -58492408 + AT_rich Low_complexity Low_complexity 1 23 0 2 1326 804 309 118 10 chr4 97137742 97138178 -58491942 + L1_Mur3 LINE L1 2231 2711 -3169 2 1326 405 0 0 0 chr4 97138178 97138223 -58491897 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1326 804 309 118 10 chr4 97138223 97138276 -58491844 + L1_Mur3 LINE L1 2712 2773 -3107 2 1326 2382 213 24 19 chr4 97138752 97139289 -58490831 - Lx5 LINE L1 -3 7047 6508 2 1326 226 116 29 78 chr4 97139503 97139606 -58490514 + T-rich Low_complexity Low_complexity 3 100 0 2 1326 194 0 39 0 chr4 97139739 97139765 -58490355 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1326 1092 35 0 59 chr4 97139770 97139801 -58490319 - B1_Mus2 SINE Alu -4 143 32 2 1326 391 240 42 126 chr4 97139801 97139890 -58490230 - MT2B LTR ERVL -337 264 196 2 1326 2795 44 7 144 chr4 97139890 97140340 -58489780 - RLTR10 LTR ERVK -2 388 1 2 1326 1092 35 0 59 chr4 97140340 97140371 -58489749 - B1_Mus2 SINE Alu -116 31 1 2 1326 391 240 42 126 chr4 97140371 97140417 -58489703 - MT2B LTR ERVL -406 195 112 2 1326 226 398 34 48 chr4 97140436 97140642 -58489478 + MIRb SINE MIR 27 229 -39 2 1326 229 343 0 0 chr4 97141647 97141749 -58488371 + L1MA6 LINE L1 6162 6263 -37 2 1326 614 269 94 31 chr4 97141923 97142211 -58487909 + Lx8 LINE L1 6811 7116 -357 2 1326 580 328 62 12 chr4 97142710 97143034 -58487086 + Lx8 LINE L1 6986 7325 -148 2 1326 306 73 0 0 chr4 97143034 97143075 -58487045 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1326 230 217 0 0 chr4 97143872 97143918 -58486202 + G-rich Low_complexity Low_complexity 1 46 0 2 1326 911 241 89 43 chr4 97144469 97144751 -58485369 - MLT1D LTR MaLR -20 485 191 2 1326 1750 151 139 3 chr4 97145219 97145557 -58484563 + ORR1B1 LTR MaLR 11 394 0 2 1326 1488 131 59 4 chr4 97146306 97146575 -58483545 - RMER19A LTR ERVK 0 902 499 2 1326 484 339 37 23 chr4 97146721 97147020 -58483100 - Lx8 LINE L1 -2 7471 7169 2 1326 288 0 0 0 chr4 97147034 97147066 -58483054 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1326 242 219 39 64 chr4 97147069 97147147 -58482973 - ORR1A3-int LTR MaLR -1389 574 499 2 1326 2630 167 16 87 chr4 97147081 97147632 -58482488 - RLTR25A LTR ERVK -590 513 2 2 1326 445 186 88 0 chr4 97147740 97147842 -58482278 - Lx8 LINE L1 -590 6883 6773 2 1326 222 37 0 0 chr4 97148228 97148255 -58481865 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2 1326 411 73 0 0 chr4 97150917 97150972 -58479148 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1326 218 370 33 0 chr4 97150993 97151085 -58479035 - RSINE1 SINE B4 -66 99 5 2 1326 1172 149 34 10 chr4 97152083 97152287 -58477833 + URR1B DNA MER1_type 17 225 0 2 1326 459 286 95 42 chr4 97152287 97152316 -58477804 - CYRA11_Mm Unknown Y-chromosome -225 345 139 2 1326 188 265 20 0 chr4 97152511 97152560 -58477560 + MIR SINE MIR 120 169 -93 2 1326 43 35 0 0 chr4 97152601 97152658 -58477462 + AT_rich Low_complexity Low_complexity 1 57 0 2 1326 663 75 0 0 chr4 97152769 97152863 -58477257 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 1326 199 389 57 7 chr4 97152909 97153049 -58477071 + MIRb SINE MIR 80 226 -42 2 1326 699 12 0 0 chr4 97154185 97154265 -58475855 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 1326 522 0 0 0 chr4 97155039 97155097 -58475023 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1326 280 216 0 20 chr4 97155163 97155262 -58474858 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 2 1326 362 21 0 21 chr4 97155882 97155930 -58474190 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1326 342 0 0 0 chr4 97156249 97156287 -58473833 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1326 188 308 0 84 chr4 97156429 97156500 -58473620 + L3 LINE CR1 1897 1961 -2528 2 1326 254 329 12 0 chr4 97158097 97158179 -58471941 + MER58B DNA MER1_type 259 341 0 2 1326 680 323 77 32 chr4 97159023 97159490 -58470630 - MER89-int LTR ERV1 -185 6616 6129 2 1326 2228 301 60 29 chr4 97159496 97159978 -58470142 - Lx7 LINE L1 -1018 6678 6194 2 1326 297 0 0 0 chr4 97159978 97160011 -58470109 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1326 2228 271 66 25 chr4 97160011 97160578 -58469542 - Lx7 LINE L1 -1503 6193 5573 2 1326 3279 146 212 0 chr4 97160578 97161186 -58468934 + RMER19A LTR ERVK 1 737 0 2 1326 2022 241 73 21 chr4 97161186 97161523 -58468597 - Lx7 LINE L1 -308 5572 5219 2 1326 779 315 70 19 chr4 97161539 97162091 -58468029 + Lx7 LINE L1 6714 7299 -397 2 1326 7256 154 47 21 chr4 97162374 97163843 -58466277 + Lx4A LINE L1 5528 7055 -3 2 1326 653 177 12 24 chr4 97164871 97165039 -58465081 + G-rich Low_complexity Low_complexity 5 170 0 2 1326 1179 117 0 0 chr4 97165040 97165220 -58464900 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1326 588 317 147 3 chr4 97165483 97165803 -58464317 - MER89 LTR ERV1 -8 551 186 2 1326 216 97 0 0 chr4 97166610 97166641 -58463479 + (GAATG)n Simple_repeat Simple_repeat 3 33 0 2 1326 2059 221 80 48 chr4 97166898 97167539 -58462581 + Lx7 LINE L1 6645 7305 -391 2 1326 230 213 0 0 chr4 97167705 97167766 -58462354 + Lx6 LINE L1 7366 7426 -34 2 1326 2183 108 78 6 chr4 97169737 97170072 -58460048 + RLTR15 LTR ERVK 1 359 0 2 1326 404 298 66 77 chr4 97170807 97170989 -58459131 + RMER30 DNA MER1_type 10 189 -13 2 1326 446 108 12 0 chr4 97171356 97171439 -58458681 + (TTG)n Simple_repeat Simple_repeat 1 84 0 2 1326 243 338 101 14 chr4 97172562 97172700 -58457420 + LTR16C LTR ERVL 31 180 -309 2 1326 465 266 8 24 chr4 97173193 97173320 -58456800 - Charlie4z DNA MER1_type -4 163 39 2 1326 24 0 0 0 chr4 97173980 97174004 -58456116 + AT_rich Low_complexity Low_complexity 1 24 0 2 1326 1999 147 107 10 chr4 97174078 97174462 -58455658 + MTC LTR MaLR 1 421 0 2 1326 1141 77 0 0 chr4 97174814 97174957 -58455163 + B1_Mus1 SINE Alu 2 144 -4 2 1326 1158 165 78 28 chr4 97176049 97176304 -58453816 - Lx5 LINE L1 0 7050 6783 2 1326 191 61 0 29 chr4 97176767 97176801 -58453319 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 2 1326 180 111 0 0 chr4 97176812 97176839 -58453281 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2 1326 255 342 127 7 chr4 97177361 97177511 -58452609 - MLT1L LTR MaLR -343 267 100 2 1326 549 0 0 0 chr4 97178922 97178983 -58451137 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1326 313 259 25 0 chr4 97179422 97179503 -58450617 + MER53 DNA hAT 85 167 -26 2 1326 1385 75 30 0 chr4 97180212 97180412 -58449708 + L1_Mus3 LINE L1 6425 6630 -8 2 1326 369 0 0 0 chr4 97180906 97180947 -58449173 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 2 1326 836 164 13 60 chr4 97180951 97181100 -58449020 - B1_Mur3 SINE Alu -7 142 1 2 1326 187 333 44 44 chr4 97181485 97181620 -58448500 + MIRc SINE MIR 73 207 -61 2 1326 4483 185 96 2 chr4 97182240 97182478 -58447642 - Lx9 LINE L1 -1 7643 7372 2 1326 2456 90 48 0 chr4 97182478 97182833 -58447287 + L1_Mus3 LINE L1 6266 6637 -1 2 1326 4483 185 96 2 chr4 97182833 97183580 -58446540 - Lx9 LINE L1 -273 7371 6565 2 1326 380 20 20 0 chr4 97186370 97186419 -58443701 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1326 552 263 81 105 chr4 97186438 97186723 -58443397 - B4 SINE B4 -14 278 1 2 1326 23 54 0 0 chr4 97189316 97189353 -58440767 + AT_rich Low_complexity Low_complexity 1 37 0 2 1326 225 94 0 0 chr4 97189617 97189649 -58440471 + (CAT)n Simple_repeat Simple_repeat 2 33 0 2 1326 180 77 0 0 chr4 97189772 97189798 -58440322 + (TAAAAA)n Simple_repeat Simple_repeat 1 26 0 2 1326 30 0 0 0 chr4 97190477 97190507 -58439613 + AT_rich Low_complexity Low_complexity 1 30 0 2 1326 238 289 12 0 chr4 97190993 97191076 -58439044 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1326 1906 44 0 0 chr4 97191528 97191757 -58438363 + L1Md_T LINE L1 6352 6580 -2 2 1326 1292 286 159 29 chr4 97192215 97192736 -58437384 - Lx6 LINE L1 -29 7431 6843 2 1326 2284 201 9 52 chr4 97192734 97193360 -58436760 + L1_Mur2 LINE L1 5200 5787 -99 2 1326 182 307 84 56 chr4 97194741 97194848 -58435272 - MIRc SINE MIR -125 143 34 2 1326 541 367 144 33 chr4 97196678 97197256 -58432864 + L1MEb LINE L1 115 756 -5338 2 1326 1876 229 93 21 chr4 97197360 97197887 -58432233 + RMER12 LTR ERVK 1 565 -757 2 1326 2069 62 43 4 chr4 97197887 97198164 -58431956 - MTB_Mm LTR MaLR -119 288 1 2 1326 1018 259 140 104 chr4 97198164 97198790 -58431330 + RMER12 LTR ERVK 703 1848 0 2 1326 516 330 141 57 chr4 97198847 97199023 -58431097 + L1MEb LINE L1 1346 1534 -4666 2 1326 546 182 30 15 chr4 97199023 97199157 -58430963 + Lx4B LINE L1 6919 7054 -4 2 1326 516 330 141 57 chr4 97199157 97199228 -58430892 + L1MEb LINE L1 1535 1613 -4587 2 1326 506 298 111 11 chr4 97199228 97199418 -58430702 + B3 SINE B2 4 212 -4 2 1326 516 330 141 57 chr4 97199418 97199644 -58430476 + L1MEb LINE L1 1614 1859 -4341 2 1326 602 328 68 43 chr4 97199726 97200504 -58429616 + L1_Mur3 LINE L1 1428 2214 -3666 2 1326 4498 2 0 0 chr4 97200504 97200997 -58429123 + L1Md_A LINE L1 6090 6582 0 2 1326 602 328 68 43 chr4 97200997 97201034 -58429086 + L1_Mur3 LINE L1 2215 2252 -3628 2 1326 5027 63 103 17 chr4 97201034 97201740 -58428380 + L1_Mus3 LINE L1 5872 6638 0 2 1326 602 328 68 43 chr4 97201740 97201953 -58428167 + L1_Mur3 LINE L1 2253 2482 -3398 2 1326 725 263 0 28 chr4 97201950 97202130 -58427990 + Lx8 LINE L1 7121 7295 -178 2 1326 248 297 162 37 chr4 97203813 97203989 -58426131 + MIR SINE MIR 1 195 -67 2 1326 642 105 22 22 chr4 97204150 97204286 -58425834 - L1_Mus3 LINE L1 0 6638 6503 3 1326 3263 123 13 26 chr4 97204289 97204553 -58425567 - Lx4B LINE L1 -43 7015 6752 3 1326 3113 115 56 23 chr4 97204553 97205069 -58425051 - RMER16 LTR ERVK 0 533 1 3 1326 3263 123 13 26 chr4 97205069 97205347 -58424773 - Lx4B LINE L1 -307 6751 6480 3 1326 249 255 42 11 chr4 97205388 97205483 -58424637 + L1MEf LINE L1 550 647 -5553 3 1326 764 264 19 19 chr4 97205476 97205692 -58424428 + Lx8 LINE L1 6881 7096 -377 3 1326 507 186 17 8 chr4 97205708 97205827 -58424293 - Lx4B LINE L1 -4 7054 6935 3 1326 538 127 21 11 chr4 97205855 97205958 -58424162 - Lx4B LINE L1 -197 6784 6681 3 1326 286 159 48 0 chr4 97205990 97206053 -58424067 + Lx8 LINE L1 7081 7146 -327 3 1326 658 353 19 27 chr4 97206063 97206325 -58423795 + ORR1E LTR MaLR 100 359 0 3 1326 286 305 57 78 chr4 97206636 97206828 -58423292 - MIRb SINE MIR -29 239 52 3 1326 990 228 146 40 chr4 97207048 97207349 -58422771 - MTE2b LTR MaLR -44 335 3 3 1326 3725 34 0 0 chr4 97208598 97209036 -58421084 + L1Md_F2 LINE L1 6131 6568 -14 3 1326 1050 93 0 0 chr4 97209423 97209562 -58420558 + B1_Mus1 SINE Alu 1 139 -9 3 1326 498 17 0 0 chr4 97209562 97209621 -58420499 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1326 582 202 0 0 chr4 97211089 97211257 -58418863 + (TG)n Simple_repeat Simple_repeat 2 169 0 3 1326 207 328 45 0 chr4 97211624 97211691 -58418429 + MIR SINE MIR 81 150 -58 3 1326 307 382 53 13 chr4 97213059 97213210 -58416910 + MLT2E LTR ERVL 1 157 -471 3 1326 736 289 134 4 chr4 97213359 97213613 -58416507 + RMER1A Other Other 13 299 -731 3 1326 864 232 63 42 chr4 97213633 97213966 -58416154 + L1_Rod LINE L1 2708 3047 -2800 3 1326 1065 340 94 23 chr4 97214447 97215022 -58415098 - MER99 DNA hAT? -4 827 212 3 1326 230 358 139 5 chr4 97215196 97215398 -58414722 - MLT1K LTR MaLR -20 575 347 3 1326 372 365 61 41 chr4 97215461 97215658 -58414462 + LTR33 LTR ERVL 34 234 -281 3 1326 374 318 82 71 chr4 97215868 97216051 -58414069 - MLT1K LTR MaLR -299 296 112 3 1326 283 299 90 14 chr4 97216293 97216437 -58413683 + MIRc SINE MIR 31 177 -31 3 1326 252 0 0 0 chr4 97218392 97218420 -58411700 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1326 2823 212 96 48 chr4 97218833 97219680 -58410440 + RMER19B LTR ERVK 4 890 -12 3 1326 722 251 74 14 chr4 97220656 97221174 -58408946 - L1M2 LINE L1 -734 5563 5012 3 1326 1471 148 12 0 chr4 97221176 97221400 -58408720 + RMER4B LTR ERVK 28 254 -331 3 1326 203 81 0 51 chr4 97221400 97221439 -58408681 + (CTG)n Simple_repeat Simple_repeat 1 37 0 3 1326 1471 233 34 54 chr4 97221439 97221655 -58408465 + RMER4B LTR ERVK 255 456 -10 3 1326 909 154 0 0 chr4 97221866 97222028 -58408092 + CT-rich Low_complexity Low_complexity 2 163 0 3 1326 210 129 0 0 chr4 97222036 97222067 -58408053 + (TCC)n Simple_repeat Simple_repeat 1 31 0 3 1326 1444 217 37 21 chr4 97222057 97222382 -58407738 + MurERV4-int LTR ERVK 190 519 -4741 3 1326 2746 209 6 30 chr4 97222500 97223029 -58407091 + MurERV4-int LTR ERVK 561 1076 -4184 3 1326 7964 188 37 28 chr4 97223967 97224915 -58405205 + MurERV4-int LTR ERVK 1066 2024 -3236 3 1326 198 91 0 0 chr4 97224915 97224948 -58405172 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1326 7964 188 37 28 chr4 97224948 97225585 -58404535 + MurERV4-int LTR ERVK 2025 2665 -2595 3 1326 357 147 14 68 chr4 97225622 97225680 -58404440 + B1_Mur4 SINE Alu 1 55 -95 3 1326 1144 91 6 11 chr4 97225680 97225857 -58404263 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 3 1326 357 147 14 68 chr4 97225857 97225871 -58404249 + B1_Mur4 SINE Alu 56 69 -81 3 1326 1770 211 39 87 chr4 97225871 97225995 -58404125 + MurERV4-int LTR ERVK 4103 4227 -4732 3 1326 1137 70 14 0 chr4 97225995 97226138 -58403982 + B1_Mus2 SINE Alu 2 146 -1 3 1326 2379 200 27 35 chr4 97226138 97226662 -58403458 + MurERV4-int LTR ERVK 4228 5260 0 3 1326 1527 224 101 32 chr4 97226670 97227155 -58402965 + RMER4B LTR ERVK 17 466 0 3 1326 237 244 69 85 chr4 97227646 97227776 -58402344 - Zaphod DNA Tip100 -98 3933 3806 3 1326 354 160 138 28 chr4 97227808 97227917 -58402203 - Lx9 LINE L1 -1 7643 7523 3 1326 1158 299 74 31 chr4 97228473 97229057 -58401063 - Lx9 LINE L1 -18 7626 7018 3 1326 34 42 0 0 chr4 97229168 97229216 -58400904 + AT_rich Low_complexity Low_complexity 1 48 0 3 1326 493 380 68 4 chr4 97229495 97229759 -58400361 - Zaphod DNA Tip100 -3477 554 274 3 1326 266 211 51 2 chr4 97229846 97229913 -58400207 - ORR1E LTR MaLR -4 415 286 3 1326 401 133 0 13 chr4 97229913 97229989 -58400131 + (TTG)n Simple_repeat Simple_repeat 1 75 0 3 1326 384 292 164 33 chr4 97229993 97230145 -58399975 - MTC LTR MaLR -79 340 169 3 1326 1148 169 5 28 chr4 97230149 97230362 -58399758 + URR1B DNA MER1_type 18 225 0 3 1326 678 247 43 33 chr4 97230362 97230536 -58399584 - MTC LTR MaLR -245 176 1 3 1326 250 377 47 0 chr4 97230547 97230653 -58399467 - Zaphod DNA Tip100 -3885 146 36 3 1326 278 308 36 10 chr4 97230998 97231098 -58399022 + PB1D10 SINE Alu 1 107 -207 3 1326 254 284 48 32 chr4 97231787 97232016 -58398104 + L1M3c LINE L1 1853 2091 -4946 3 1326 262 279 134 16 chr4 97232064 97232250 -58397870 + L1M3c LINE L1 2175 2382 -4655 3 1326 764 318 57 18 chr4 97232408 97232862 -58397258 + L1M4c LINE L1 1357 1828 -4556 3 1326 1507 300 88 22 chr4 97233101 97233589 -58396531 + L1M4c LINE L1 2116 2628 -3748 3 1326 579 29 0 0 chr4 97233589 97233658 -58396462 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 3 1326 1507 288 98 23 chr4 97233658 97234167 -58395953 + L1M4c LINE L1 2629 3192 -3184 3 1326 627 83 10 20 chr4 97234239 97234337 -58395783 - L1_Mus2 LINE L1 -203 6363 6267 3 1326 1634 103 9 0 chr4 97234337 97234561 -58395559 + L1_Mus2 LINE L1 6341 6566 0 3 1326 1265 271 92 9 chr4 97234697 97235122 -58394998 - RCHARR1 DNA MER1_type 0 974 515 3 1326 27 29 0 0 chr4 97235122 97235156 -58394964 + AT_rich Low_complexity Low_complexity 1 34 0 3 1326 2531 309 126 27 chr4 97235222 97236652 -58393468 - Lx9 LINE L1 -160 7484 5801 3 1326 1449 236 92 47 chr4 97236655 97237103 -58393017 - RCHARR1 DNA MER1_type -428 546 79 3 1326 342 0 0 0 chr4 97238242 97238280 -58391840 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1326 186 43 0 0 chr4 97238280 97238302 -58391818 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 3 1326 681 264 52 52 chr4 97238386 97238578 -58391542 + B4A SINE B4 4 195 -97 3 1326 243 0 0 0 chr4 97238690 97238717 -58391403 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1326 468 0 0 0 chr4 97238717 97238768 -58391352 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1326 1045 156 171 5 chr4 97238993 97239186 -58390934 - URR1B DNA MER1_type 0 225 1 3 1326 330 364 91 0 chr4 97239220 97239330 -58390790 + LTR16A LTR ERVL 212 331 -120 3 1326 2551 45 22 19 chr4 97239339 97239655 -58390465 - L1Md_F2 LINE L1 -1 6581 6265 3 1326 1427 53 31 31 chr4 97239653 97239847 -58390273 - L1Md_F3 LINE L1 0 6584 6391 3 1326 6850 33 5 0 chr4 97239847 97240675 -58389445 + L1Md_F3 LINE L1 5555 6386 -198 3 1326 201 216 65 54 chr4 97241506 97241599 -58388521 + L2c LINE L2 3254 3347 -40 3 1326 456 19 0 0 chr4 97242104 97242157 -58387963 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1326 351 0 0 0 chr4 97242157 97242195 -58387925 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1326 240 200 0 0 chr4 97242618 97242668 -58387452 + T-rich Low_complexity Low_complexity 1 50 0 3 1326 716 0 12 0 chr4 97243109 97243193 -58386927 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 3 1326 252 0 0 0 chr4 97243198 97243226 -58386894 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1326 417 20 0 0 chr4 97243590 97243640 -58386480 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1326 263 311 110 28 chr4 97243753 97243862 -58386258 - PB1D7 SINE Alu 0 120 3 3 1326 181 311 132 16 chr4 97243906 97244027 -58386093 + MIRb SINE MIR 114 248 -20 3 1326 269 312 72 3 chr4 97244116 97244280 -58385840 + MIR SINE MIR 95 266 -2 3 1326 207 0 0 0 chr4 97246223 97246246 -58383874 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 3 1326 24 0 0 0 chr4 97247891 97247915 -58382205 + AT_rich Low_complexity Low_complexity 1 24 0 3 1326 25 31 0 0 chr4 97249005 97249037 -58381083 + AT_rich Low_complexity Low_complexity 1 32 0 3 1326 21 36 0 0 chr4 97251522 97251550 -58378570 + AT_rich Low_complexity Low_complexity 1 28 0 3 1327 1193 95 0 9 chr4 97255720 97256038 -58374082 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 3 1327 22 0 0 0 chr4 97256753 97256775 -58373345 + AT_rich Low_complexity Low_complexity 1 22 0 3 1327 1039 284 10 52 chr4 97258387 97258692 -58371428 + B4A SINE B4 1 292 0 3 1327 237 132 0 0 chr4 97258693 97258731 -58371389 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1327 543 308 138 12 chr4 97259170 97259495 -58370625 + L2a LINE L2 2539 2904 -515 3 1327 605 56 0 22 chr4 97259722 97259813 -58370307 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 3 1327 274 306 110 24 chr4 97259908 97260035 -58370085 + L2a LINE L2 3279 3416 -10 3 1327 357 82 0 0 chr4 97261603 97261652 -58368468 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1327 23 33 0 0 chr4 97261665 97261695 -58368425 + AT_rich Low_complexity Low_complexity 1 30 0 3 1327 347 280 101 40 chr4 97261814 97261963 -58368157 + RSINE1 SINE B4 4 161 -4 3 1327 207 330 0 0 chr4 97262549 97262655 -58367465 + (CAGGA)n Simple_repeat Simple_repeat 1 106 0 3 1327 246 247 92 23 chr4 97263161 97263248 -58366872 + L1M6 LINE L1 1333 1425 -5071 3 1327 22 35 0 0 chr4 97264126 97264155 -58365965 + AT_rich Low_complexity Low_complexity 1 29 0 3 1327 465 19 0 0 chr4 97266303 97266357 -58363763 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1327 501 17 0 0 chr4 97269647 97269705 -58360415 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 3 1327 473 48 35 23 chr4 97269744 97269830 -58360290 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 3 1327 964 273 162 23 chr4 97269830 97270310 -58359810 - L1MB3 LINE L1 -27 6156 5610 3 1327 551 276 38 16 chr4 97270312 97270496 -58359624 - L1M4 LINE L1 -621 5563 5376 3 1327 968 135 7 0 chr4 97270912 97271060 -58359060 - URR1A DNA MER1_type 0 226 78 3 1327 269 312 31 41 chr4 97271266 97271363 -58358757 + PB1D10 SINE Alu 14 109 -8 3 1327 217 226 38 0 chr4 97271436 97271489 -58358631 + MIRc SINE MIR 79 133 -135 3 1327 200 132 26 0 chr4 97271840 97271878 -58358242 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1327 363 96 0 0 chr4 97272331 97272383 -58357737 + (A)n Simple_repeat Simple_repeat 1 52 0 3 1327 207 0 0 0 chr4 97273622 97273645 -58356475 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1327 184 279 33 0 chr4 97274041 97274102 -58356018 - MIR SINE MIR -127 135 73 3 1327 330 152 0 0 chr4 97274274 97274333 -58355787 + CT-rich Low_complexity Low_complexity 1 59 0 3 1327 243 146 0 0 chr4 97274613 97274654 -58355466 + (ATG)n Simple_repeat Simple_repeat 2 42 0 4 1327 189 0 0 0 chr4 97275921 97275942 -58354178 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1327 204 246 0 0 chr4 97277345 97277414 -58352706 + GA-rich Low_complexity Low_complexity 4 72 0 4 1327 197 0 0 67 chr4 97278978 97279008 -58351112 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 4 1327 1961 30 0 0 chr4 97279602 97279833 -58350287 - L1Md_F2 LINE L1 0 6582 6352 4 1327 4902 31 24 0 chr4 97279833 97280407 -58349713 + L1Md_F2 LINE L1 5771 6358 -224 4 1327 424 227 0 0 chr4 97280900 97280975 -58349145 + ID4 SINE ID 4 78 -5 4 1327 192 163 0 0 chr4 97281425 97281468 -58348652 + T-rich Low_complexity Low_complexity 1 43 0 4 1327 1145 69 0 0 chr4 97281482 97281627 -58348493 - B1_Mus1 SINE Alu -2 146 2 4 1327 395 149 14 0 chr4 97286054 97286128 -58343992 + CT-rich Low_complexity Low_complexity 1 75 0 4 1327 1153 90 0 11 chr4 97286193 97286372 -58343748 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 4 1327 5708 16 0 0 chr4 97286414 97287049 -58343071 + L1Md_A LINE L1 5948 6582 0 4 1327 517 264 98 5 chr4 97289979 97290083 -58340037 - B3 SINE B2 -1 215 97 4 1327 1031 174 118 10 chr4 97290083 97290286 -58339834 - URR1A DNA MER1_type 0 226 2 4 1327 517 264 98 5 chr4 97290286 97290375 -58339745 - B3 SINE B2 -120 96 5 4 1327 450 197 0 0 chr4 97290375 97290522 -58339598 + (CA)n Simple_repeat Simple_repeat 2 148 0 4 1327 215 311 21 32 chr4 97290821 97290914 -58339206 + L2c LINE L2 3268 3359 -28 4 1327 233 303 11 11 chr4 97290938 97291028 -58339092 + MIR3 SINE MIR 103 192 -16 4 1327 324 346 65 83 chr4 97293703 97293993 -58336127 + B4 SINE B4 2 286 -6 4 1327 488 59 15 0 chr4 97294005 97294073 -58336047 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 4 1327 553 329 84 51 chr4 97294246 97294579 -58335541 + MLT1C LTR MaLR 124 467 0 4 1327 220 387 29 40 chr4 97294745 97294920 -58335200 + MIRb SINE MIR 1 173 -95 4 1327 187 242 75 15 chr4 97296018 97296085 -58334035 - L2a LINE L2 -4 3422 3352 4 1327 374 300 18 0 chr4 97296254 97296364 -58333756 + PB1D10 SINE Alu 1 112 -5 4 1327 351 257 55 0 chr4 97296419 97296528 -58333592 - MLT1C LTR MaLR -352 115 1 4 1327 241 336 62 50 chr4 97297685 97297860 -58332260 - MIR SINE MIR -84 192 6 4 1327 184 289 0 0 chr4 97298215 97298260 -58331860 + MIRc SINE MIR 168 212 -56 4 1327 280 193 97 54 chr4 97299353 97299446 -58330674 + B1F2 SINE Alu 53 149 0 4 1327 337 281 0 0 chr4 97299446 97299528 -58330592 + ID2 SINE ID 2 83 0 4 1327 183 343 90 7 chr4 97299663 97299807 -58330313 + L2 LINE L2 2792 2947 -472 4 1327 257 370 0 0 chr4 97299853 97299945 -58330175 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1327 373 81 32 0 chr4 97301709 97301771 -58328349 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1327 468 253 108 19 chr4 97302427 97302494 -58327626 + MIRb SINE MIR 75 141 -127 4 1327 314 58 39 0 chr4 97302494 97302546 -58327574 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 4 1327 468 253 108 19 chr4 97302546 97302635 -58327485 + MIRb SINE MIR 142 245 -23 4 1327 249 159 0 0 chr4 97302893 97302956 -58327164 + (CAAG)n Simple_repeat Simple_repeat 2 64 0 4 1327 951 129 0 0 chr4 97302960 97303138 -58326982 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 4 1327 221 277 0 41 chr4 97303560 97303658 -58326462 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 4 1327 182 333 181 14 chr4 97305595 97305811 -58324309 + L2c LINE L2 3098 3349 -38 4 1327 180 111 0 0 chr4 97307053 97307080 -58323040 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 4 1327 965 235 115 45 chr4 97307581 97307911 -58322209 - ORR1E LTR MaLR -5 354 2 4 1327 1456 266 58 27 chr4 97307911 97308355 -58321765 - MTE-int LTR MaLR -83 1497 1040 4 1327 200 138 62 0 chr4 97308361 97308426 -58321694 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1327 511 229 0 0 chr4 97308463 97308572 -58321548 - ORR1E LTR MaLR -225 134 26 4 1327 264 309 42 21 chr4 97308696 97308838 -58321282 + MER65D LTR ERV1 1 145 -328 4 1327 445 324 104 16 chr4 97308922 97309173 -58320947 + MER65D LTR ERV1 157 429 -44 4 1327 520 256 162 23 chr4 97309429 97309724 -58320396 - ORR1E LTR MaLR -11 368 4 4 1327 366 80 0 0 chr4 97310702 97310752 -58319368 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1327 2202 192 55 13 chr4 97310986 97311461 -58318659 - RMER15 LTR ERVL -3 572 78 4 1327 5034 84 1 6 chr4 97312387 97313070 -58317050 + L1_Mus4 LINE L1 5955 6634 -2 4 1327 258 32 0 0 chr4 97314186 97314217 -58315903 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1327 189 0 0 0 chr4 97315421 97315442 -58314678 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1327 336 102 0 0 chr4 97315855 97315904 -58314216 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1327 591 15 0 0 chr4 97317955 97318023 -58312097 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1327 364 343 29 12 chr4 97318023 97318194 -58311926 + MIR SINE MIR 48 221 -41 4 1327 288 0 0 0 chr4 97320949 97320981 -58309139 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1327 260 341 40 0 chr4 97324139 97324265 -58305855 - MIRb SINE MIR -45 223 93 4 1327 896 27 9 0 chr4 97324586 97324697 -58305423 + (TG)n Simple_repeat Simple_repeat 2 113 0 4 1327 366 123 0 0 chr4 97326220 97326277 -58303843 + (CATA)n Simple_repeat Simple_repeat 2 58 0 4 1327 207 139 0 0 chr4 97326277 97326313 -58303807 + (GGGAGA)n Simple_repeat Simple_repeat 5 40 0 4 1327 464 222 24 43 chr4 97326475 97326618 -58303502 + B1F SINE Alu 3 146 -3 4 1327 209 246 33 0 chr4 97326749 97326810 -58303310 + (TGAA)n Simple_repeat Simple_repeat 2 64 0 4 1327 224 268 0 20 chr4 97327349 97327443 -58302677 - MIR SINE MIR -126 142 53 4 1327 295 155 0 33 chr4 97329163 97329223 -58300897 + MIR SINE MIR 89 146 -116 4 1327 23 0 0 0 chr4 97329947 97329970 -58300150 + AT_rich Low_complexity Low_complexity 1 23 0 4 1327 345 242 121 0 chr4 97330027 97330126 -58299994 + Lx8 LINE L1 7270 7380 -93 4 1327 233 313 12 119 chr4 97331016 97331236 -58298884 - Charlie4 DNA MER1_type -21 1940 1753 4 1327 459 0 0 0 chr4 97333330 97333381 -58296739 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1327 233 262 0 16 chr4 97333884 97333946 -58296174 - MamRep434 DNA TcMar -149 277 217 4 1327 571 335 45 63 chr4 97334247 97334578 -58295542 - MER2 DNA MER2_type -1 344 20 4 1327 27 0 0 0 chr4 97334739 97334766 -58295354 + AT_rich Low_complexity Low_complexity 1 27 0 4 1327 25 31 0 0 chr4 97335043 97335075 -58295045 + AT_rich Low_complexity Low_complexity 1 32 0 4 1327 2240 159 10 15 chr4 97335188 97335590 -58294530 - Lx LINE L1 0 6654 6255 4 1327 241 346 41 76 chr4 97335641 97335932 -58294188 + MER20B DNA MER1_type 1 281 -502 4 1327 293 267 120 58 chr4 97336080 97336271 -58293849 + MER20B DNA MER1_type 445 647 -136 4 1327 205 188 47 0 chr4 97336569 97336633 -58293487 + CT-rich Low_complexity Low_complexity 2 68 0 4 1327 383 305 53 0 chr4 97336876 97337027 -58293093 - L1MA5 LINE L1 -12 6288 6130 4 1327 25 31 0 0 chr4 97338311 97338343 -58291777 + AT_rich Low_complexity Low_complexity 1 32 0 4 1327 1113 126 75 10 chr4 97338343 97338544 -58291576 - Lx5 LINE L1 -4 7046 6833 4 1327 471 141 0 0 chr4 97339600 97339678 -58290442 + (TTA)n Simple_repeat Simple_repeat 2 79 0 4 1327 718 151 7 7 chr4 97341679 97341819 -58288301 + CT-rich Low_complexity Low_complexity 6 145 0 4 1327 206 337 0 0 chr4 97341834 97341917 -58288203 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 4 1327 723 289 99 11 chr4 97341978 97342561 -58287559 - L1MA8 LINE L1 -12 6156 5504 4 1327 432 0 0 0 chr4 97343112 97343160 -58286960 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1327 522 0 0 0 chr4 97343530 97343588 -58286532 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1327 283 248 25 76 chr4 97345133 97345251 -58284869 - MIR SINE MIR -72 190 79 4 1327 297 75 0 0 chr4 97348110 97348150 -58281970 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 4 1327 404 361 59 42 chr4 97350449 97350607 -58279513 + B4 SINE B4 50 218 -74 4 1327 218 105 26 0 chr4 97350607 97350645 -58279475 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 4 1327 404 361 59 42 chr4 97350645 97350723 -58279397 + B4 SINE B4 219 290 -2 4 1327 200 337 44 11 chr4 97352503 97352593 -58277527 - MIRc SINE MIR -116 152 60 4 1327 4062 124 73 8 chr4 97353107 97353747 -58276373 - Lx4A LINE L1 -1 7057 6376 4 1327 3158 122 21 15 chr4 97353750 97354231 -58275889 + Lx4A LINE L1 5885 6368 -690 4 1327 291 324 0 9 chr4 97354914 97355023 -58275097 - B1F1 SINE Alu -2 147 40 4 1327 207 0 0 0 chr4 97355040 97355063 -58275057 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1327 261 295 0 0 chr4 97355085 97355146 -58274974 - ID4 SINE ID -18 65 5 4 1327 248 53 26 0 chr4 97355482 97355520 -58274600 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1327 396 0 0 0 chr4 97355720 97355764 -58274356 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1327 203 300 19 65 chr4 97357998 97358105 -58272015 - L2a LINE L2 -25 3401 3300 4 1327 232 229 0 16 chr4 97358852 97358914 -58271206 + MIR SINE MIR 70 130 -132 4 1327 468 282 0 0 chr4 97363433 97363543 -58266577 + RSINE1 SINE B4 3 112 -53 4 1327 274 292 101 46 chr4 97365763 97365982 -58264138 - L2 LINE L2 -438 2981 2751 4 1327 521 312 131 26 chr4 97366317 97366629 -58263491 - MLT1A0 LTR MaLR -1 364 20 4 1327 1832 233 40 0 chr4 97366711 97367106 -58263014 + MTD LTR MaLR 1 411 -8 4 1327 218 320 188 0 chr4 97367515 97367696 -58262424 + MIR SINE MIR 6 220 -42 4 1327 1040 283 40 8 chr4 97368484 97368886 -58261234 + L1MB7 LINE L1 5482 5896 -288 4 1327 225 250 121 35 chr4 97368955 97369071 -58261049 + L1MB7 LINE L1 6038 6163 -11 4 1327 206 250 91 41 chr4 97369443 97369564 -58260556 + MIR SINE MIR 89 215 -47 4 1327 277 344 72 36 chr4 97369941 97370164 -58259956 - MIR SINE MIR -20 242 12 5 1327 181 250 163 0 chr4 97371432 97371524 -58258596 + L2 LINE L2 2645 2751 -668 5 1327 390 268 20 130 chr4 97371966 97372036 -58258084 + RSINE1 SINE B4 17 72 -93 5 1327 1071 73 0 0 chr4 97372036 97372172 -58257948 + B1_Mus2 SINE Alu 1 136 -11 5 1327 216 0 0 0 chr4 97372172 97372196 -58257924 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1327 390 268 20 130 chr4 97372196 97372270 -58257850 + RSINE1 SINE B4 73 145 -20 5 1327 360 190 0 0 chr4 97372948 97373027 -58257093 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1327 623 252 93 19 chr4 97374892 97375054 -58255066 + B4A SINE B4 2 175 -117 5 1327 187 54 26 26 chr4 97378722 97378760 -58251360 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1327 301 254 14 0 chr4 97378776 97378847 -58251273 + ID4 SINE ID 9 80 -3 5 1327 490 251 32 74 chr4 97379042 97379231 -58250889 - B2_Mm2 SINE B2 -6 189 9 5 1327 404 320 41 15 chr4 97380234 97380431 -58249689 + L1MA9 LINE L1 6108 6309 -3 5 1327 1025 199 9 37 chr4 97380447 97380661 -58249459 + B3 SINE B2 3 210 -6 5 1327 180 205 0 25 chr4 97383354 97383394 -58246726 + MIR SINE MIR 35 73 -135 5 1327 680 163 7 0 chr4 97384033 97384186 -58245934 + (TTGG)n Simple_repeat Simple_repeat 2 155 0 5 1327 275 276 53 0 chr4 97384204 97384280 -58245840 - RMER15 LTR ERVL -104 471 392 5 1327 2381 335 57 24 chr4 97384280 97385314 -58244806 - Lx8 LINE L1 -218 7255 6188 5 1327 197 302 0 45 chr4 97385645 97385711 -58244409 + L2c LINE L2 3243 3305 -82 5 1327 184 378 0 26 chr4 97385895 97385971 -58244149 + L2c LINE L2 3287 3360 -15 5 1328 210 207 138 0 chr4 97386530 97386588 -58243532 - L2c LINE L2 -2 3385 3320 5 1328 183 283 132 8 chr4 97386987 97387108 -58243012 - MIRb SINE MIR -82 186 51 5 1328 216 0 0 0 chr4 97387502 97387526 -58242594 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1328 531 328 151 14 chr4 97388111 97388547 -58241573 - MLT1D LTR MaLR -2 503 8 5 1328 3566 281 103 4 chr4 97389835 97389906 -58240214 - Lx8 LINE L1 -10 7463 7384 5 1328 429 20 0 0 chr4 97389906 97389956 -58240164 + (TCC)n Simple_repeat Simple_repeat 1 50 0 5 1328 3566 281 103 4 chr4 97389956 97391037 -58239083 - Lx8 LINE L1 -90 7383 6198 5 1328 205 233 311 0 chr4 97391705 97391808 -58238312 - MIR SINE MIR -72 190 56 5 1328 1217 227 88 46 chr4 97391999 97392327 -58237793 - MTD LTR MaLR -48 371 30 5 1328 1445 229 74 11 chr4 97393339 97393692 -58236428 - MTD LTR MaLR -14 405 31 5 1328 396 335 73 86 chr4 97393734 97394048 -58236072 - ORR1E LTR MaLR -60 310 1 5 1328 316 239 0 14 chr4 97394060 97394132 -58235988 + PB1 SINE Alu 44 114 -13 5 1328 1664 247 79 57 chr4 97394335 97394893 -58235227 + L1_Rod LINE L1 5278 5847 0 5 1328 682 260 131 9 chr4 97394939 97395160 -58234960 + Lx8 LINE L1 6694 6941 -532 5 1328 1407 122 170 0 chr4 97395810 97396081 -58234039 - ORR1A2 LTR MaLR -10 317 1 5 1328 441 0 0 0 chr4 97398093 97398142 -58231978 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1328 234 0 0 0 chr4 97398142 97398167 -58231953 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1328 240 364 53 8 chr4 97398459 97398592 -58231528 - MLT1A LTR MaLR 0 374 236 5 1328 535 283 7 0 chr4 97398641 97398779 -58231341 - MTE2a LTR MaLR -5 374 236 5 1328 325 355 0 9 chr4 97398805 97398916 -58231204 - Charlie4z DNA MER1_type -24 143 34 5 1328 571 231 9 23 chr4 97399023 97399179 -58230941 + L1MA9 LINE L1 5471 5625 -617 5 1328 1093 264 176 40 chr4 97399640 97399801 -58230319 + L1MA9 LINE L1 5605 5781 -531 5 1328 558 0 0 0 chr4 97399801 97399863 -58230257 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1328 1093 264 176 40 chr4 97399863 97400304 -58229816 + L1MA9 LINE L1 5782 6288 -24 5 1328 214 342 14 0 chr4 97400844 97400917 -58229203 + ID4 SINE ID 9 82 -1 5 1328 265 286 24 0 chr4 97401040 97401124 -58228996 + L2 LINE L2 2782 2867 -552 5 1328 954 233 10 5 chr4 97402198 97402405 -58227715 + B3 SINE B2 1 208 -8 5 1328 306 302 50 8 chr4 97403152 97403272 -58226848 - L3 LINE CR1 -731 3758 3634 5 1328 579 40 0 0 chr4 97403730 97403804 -58226316 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1328 275 115 39 0 chr4 97404249 97404301 -58225819 + CT-rich Low_complexity Low_complexity 6 59 0 5 1328 783 94 0 0 chr4 97404301 97404428 -58225692 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 1328 222 186 34 0 chr4 97404552 97404611 -58225509 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1328 5727 42 10 6 chr4 97404704 97405401 -58224719 - L1_Mus1 LINE L1 0 6567 5868 5 1328 267 284 81 65 chr4 97405952 97406212 -58223908 - L1MEg LINE L1 -1701 4445 4182 5 1328 903 292 116 68 chr4 97406405 97407266 -58222854 - L1MEg LINE L1 -2003 4143 3242 5 1328 78 80 0 0 chr4 97407288 97407464 -58222656 + AT_rich Low_complexity Low_complexity 1 176 0 5 1328 229 269 118 7 chr4 97407694 97407829 -58222291 - L1MEg LINE L1 -3149 2997 2848 5 1328 553 259 14 0 chr4 97407833 97407972 -58222148 + B1F1 SINE Alu 6 146 -3 5 1328 292 300 90 63 chr4 97408078 97408377 -58221743 - L1MEg LINE L1 -3432 2708 2402 5 1328 420 266 116 68 chr4 97408532 97408842 -58221278 - L1MEg LINE L1 -5377 865 541 5 1328 192 70 70 0 chr4 97408982 97409025 -58221095 + (TTG)n Simple_repeat Simple_repeat 1 46 0 5 1328 24 0 0 0 chr4 97409053 97409077 -58221043 + AT_rich Low_complexity Low_complexity 1 24 0 5 1328 226 311 0 0 chr4 97410250 97410311 -58219809 + L2c LINE L2 3096 3156 -231 5 1328 262 329 48 0 chr4 97411449 97411595 -58218525 + MIR SINE MIR 85 237 -25 5 1328 225 0 0 0 chr4 97413282 97413307 -58216813 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1328 198 0 0 0 chr4 97413648 97413670 -58216450 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1328 756 0 0 0 chr4 97413670 97413754 -58216366 + (GAA)n Simple_repeat Simple_repeat 1 84 0 5 1328 333 68 0 0 chr4 97415260 97415304 -58214816 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 5 1328 297 0 0 0 chr4 97415602 97415635 -58214485 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1328 659 219 55 0 chr4 97415640 97415768 -58214352 - B4A SINE B4 -18 274 140 5 1328 321 229 9 54 chr4 97416020 97416131 -58213989 - RMER17A LTR ERVK -299 452 347 5 1328 287 245 0 0 chr4 97416209 97416262 -58213858 + ID4 SINE ID 11 63 -20 5 1328 517 230 128 0 chr4 97416732 97416880 -58213240 + MTD LTR MaLR 199 365 -54 5 1328 324 70 0 0 chr4 97420290 97420333 -58209787 + (CAAT)n Simple_repeat Simple_repeat 1 43 0 5 1328 186 343 0 14 chr4 97422835 97422906 -58207214 - MIR SINE MIR -115 147 78 5 1328 570 29 0 0 chr4 97423594 97423662 -58206458 + (TCC)n Simple_repeat Simple_repeat 3 70 0 5 1328 297 0 0 0 chr4 97423869 97423902 -58206218 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1328 495 0 0 0 chr4 97424134 97424189 -58205931 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1328 25 31 0 0 chr4 97426609 97426641 -58203479 + AT_rich Low_complexity Low_complexity 1 32 0 5 1328 23 0 0 0 chr4 97427524 97427547 -58202573 + AT_rich Low_complexity Low_complexity 1 23 0 5 1328 1168 207 9 5 chr4 97427625 97427839 -58202281 + B3 SINE B2 2 216 0 5 1328 722 49 0 10 chr4 97428560 97428664 -58201456 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 1328 210 91 0 0 chr4 97428846 97428879 -58201241 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1328 481 324 67 22 chr4 97429289 97429469 -58200651 + ID_B1 SINE B4 24 211 -13 5 1328 424 211 13 0 chr4 97429897 97429973 -58200147 + ID4 SINE ID 2 78 -5 5 1328 213 261 131 71 chr4 97429983 97430082 -58200038 - MIR SINE MIR -64 144 40 5 1328 867 274 144 64 chr4 97430174 97430674 -58199446 + L1MB2 LINE L1 5588 6127 -44 5 1328 456 19 0 0 chr4 97430681 97430734 -58199386 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1328 234 0 0 0 chr4 97430734 97430759 -58199361 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1328 254 206 162 0 chr4 97430806 97430874 -58199246 + L1M3 LINE L1 5799 5877 -306 5 1328 252 0 0 0 chr4 97430880 97430908 -58199212 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5 1328 369 62 0 0 chr4 97430908 97430956 -58199164 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 1328 342 0 0 0 chr4 97431913 97431951 -58198169 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1328 185 331 63 47 chr4 97432107 97432234 -58197886 - MIRc SINE MIR -51 217 89 5 1328 225 244 128 4 chr4 97432542 97432642 -58197478 + MIRc SINE MIR 77 186 -22 5 1328 243 0 0 0 chr4 97432766 97432793 -58197327 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 1328 351 0 0 0 chr4 97433395 97433434 -58196686 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1328 244 352 139 0 chr4 97435719 97435827 -58194293 - MIRb SINE MIR -115 153 31 5 1328 3978 191 52 24 chr4 97436022 97436860 -58193260 - RMER1A Other Other 0 1030 272 5 1328 309 51 0 0 chr4 97436901 97436940 -58193180 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1328 426 20 0 0 chr4 97436940 97436991 -58193129 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1328 669 221 95 7 chr4 97437029 97437166 -58192954 - RMER1A Other Other -873 157 9 5 1328 189 0 0 0 chr4 97437201 97437222 -58192898 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1328 825 124 8 0 chr4 97437268 97437397 -58192723 - B3 SINE B2 -86 130 1 5 1328 207 0 0 0 chr4 97437980 97438003 -58192117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1328 905 81 7 0 chr4 97439247 97439383 -58190737 + (GA)n Simple_repeat Simple_repeat 1 137 0 5 1328 210 71 0 0 chr4 97439823 97439851 -58190269 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 5 1328 223 343 0 0 chr4 97441529 97441596 -58188524 + CT-rich Low_complexity Low_complexity 3 69 0 5 1328 180 0 0 0 chr4 97442277 97442297 -58187823 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 1328 387 0 0 0 chr4 97442297 97442339 -58187781 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1328 583 117 0 19 chr4 97443074 97443179 -58186941 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 5 1328 222 153 40 53 chr4 97444106 97444182 -58185938 + (CGGG)n Simple_repeat Simple_repeat 2 76 0 6 1328 244 96 38 19 chr4 97444212 97444265 -58185855 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 6 1328 202 146 10 128 chr4 97444279 97444381 -58185739 + (CGGG)n Simple_repeat Simple_repeat 3 92 0 6 1328 25 31 0 0 chr4 97445103 97445135 -58184985 + GC_rich Low_complexity Low_complexity 1 32 0 6 1328 22 70 0 0 chr4 97445164 97445207 -58184913 + GC_rich Low_complexity Low_complexity 1 43 0 6 1328 22 56 0 0 chr4 97448223 97448259 -58181861 + AT_rich Low_complexity Low_complexity 1 36 0 6 1328 22 0 0 0 chr4 97448474 97448496 -58181624 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 185 149 0 41 chr4 97451323 97451372 -58178748 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 6 1328 198 0 0 0 chr4 97452063 97452085 -58178035 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1328 29 0 0 0 chr4 97452967 97452996 -58177124 + AT_rich Low_complexity Low_complexity 1 29 0 6 1328 248 131 0 21 chr4 97453544 97453591 -58176529 + CT-rich Low_complexity Low_complexity 2 47 0 6 1328 459 0 0 0 chr4 97456169 97456220 -58173900 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1328 25 0 0 0 chr4 97457520 97457545 -58172575 + AT_rich Low_complexity Low_complexity 1 25 0 6 1328 25 51 0 0 chr4 97457622 97457661 -58172459 + AT_rich Low_complexity Low_complexity 1 39 0 6 1328 21 71 0 0 chr4 97457689 97457731 -58172389 + AT_rich Low_complexity Low_complexity 1 42 0 6 1328 476 94 74 10 chr4 97457762 97457860 -58172260 - B1_Mur4 SINE Alu 0 150 2 6 1328 688 220 45 8 chr4 97458067 97458200 -58171920 - B1_Mur2 SINE Alu -11 138 1 6 1328 312 286 132 9 chr4 97458235 97458341 -58171779 + PB1D7 SINE Alu 2 120 0 6 1328 227 191 29 14 chr4 97459134 97459203 -58170917 + T-rich Low_complexity Low_complexity 1 70 0 6 1328 332 151 111 99 chr4 97459203 97459222 -58170898 - B1_Mur3 SINE Alu 0 149 138 6 1328 549 0 0 0 chr4 97459222 97459283 -58170837 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 6 1328 332 183 75 67 chr4 97459283 97459373 -58170747 - B1_Mur3 SINE Alu -12 137 68 6 1328 313 221 0 0 chr4 97459375 97459460 -58170660 - B1_Mur1 SINE Alu -18 131 66 6 1328 293 214 0 0 chr4 97459433 97459489 -58170631 - B1_Mm SINE Alu -26 121 66 6 1328 525 268 41 0 chr4 97459483 97459606 -58170514 - B1_Mur1 SINE Alu -18 131 4 6 1328 317 216 316 10 chr4 97460076 97460174 -58169946 + RSINE1 SINE B4 3 130 -35 6 1328 351 44 0 0 chr4 97460219 97460264 -58169856 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1328 225 0 0 0 chr4 97461458 97461483 -58168637 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1328 22 0 0 0 chr4 97461997 97462019 -58168101 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 309 109 0 0 chr4 97462094 97462140 -58167980 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1328 734 166 7 0 chr4 97462140 97462291 -58167829 + GA-rich Low_complexity Low_complexity 1 152 0 6 1328 25 0 0 0 chr4 97462417 97462442 -58167678 + AT_rich Low_complexity Low_complexity 1 25 0 6 1328 252 349 71 85 chr4 97464346 97464700 -58165420 + L2b LINE L2 2988 3336 -39 6 1328 385 100 14 14 chr4 97464876 97464889 -58165231 + (TAAA)n Simple_repeat Simple_repeat 2 14 0 6 1328 1270 20 0 26 chr4 97464889 97465028 -58165092 + B1_Mus2 SINE Alu 1 138 -9 6 1328 216 0 0 0 chr4 97465028 97465052 -58165068 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1328 1270 20 0 26 chr4 97465052 97465063 -58165057 + B1_Mus2 SINE Alu 139 147 0 6 1328 385 100 14 14 chr4 97465063 97465120 -58165000 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 6 1328 306 305 21 0 chr4 97467175 97467270 -58162850 - PB1 SINE Alu -2 125 29 6 1328 233 220 177 99 chr4 97468035 97468267 -58161853 - L1ME3B LINE L1 -204 6036 5787 6 1328 245 260 38 48 chr4 97468312 97468417 -58161703 - L1ME3B LINE L1 -800 5644 5541 6 1328 245 311 19 0 chr4 97468705 97468811 -58161309 - L1MC LINE L1 -913 5233 5126 6 1328 333 352 92 45 chr4 97468882 97469307 -58160813 - L1ME3B LINE L1 -1129 5017 4573 6 1328 537 16 0 0 chr4 97469326 97469388 -58160732 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1328 357 43 0 0 chr4 97469388 97469435 -58160685 + (CCA)n Simple_repeat Simple_repeat 1 47 0 6 1328 513 289 84 0 chr4 97470261 97470403 -58159717 - RSINE1 SINE B4 -8 157 4 6 1328 192 294 20 0 chr4 97472600 97472651 -58157469 - L2b LINE L2 -11 3364 3313 6 1328 22 0 0 0 chr4 97473450 97473472 -58156648 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 660 124 0 0 chr4 97474210 97474315 -58155805 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 6 1328 254 318 76 68 chr4 97474456 97474488 -58155632 + PB1D9 SINE Alu 1 119 -1 6 1328 351 207 35 47 chr4 97474488 97474574 -58155546 + ID_B1 SINE B4 137 221 -3 6 1328 347 194 130 0 chr4 97475152 97475260 -58154860 - Lx9 LINE L1 -8 7636 7515 6 1328 252 0 0 0 chr4 97475260 97475288 -58154832 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1328 23 54 0 0 chr4 97478302 97478339 -58151781 + AT_rich Low_complexity Low_complexity 1 37 0 6 1328 499 118 21 36 chr4 97478551 97478691 -58151429 + (TA)n Simple_repeat Simple_repeat 2 139 0 6 1328 1017 240 5 34 chr4 97478696 97478903 -58151217 - B3 SINE B2 -13 203 3 6 1328 218 385 0 0 chr4 97478933 97478998 -58151122 - ID4 SINE ID 0 83 19 6 1328 21 0 0 0 chr4 97480253 97480274 -58149846 + AT_rich Low_complexity Low_complexity 1 21 0 6 1328 325 93 0 0 chr4 97481697 97481740 -58148380 + HAL1-3A_ME LINE L1 1968 2010 -848 6 1328 250 245 0 0 chr4 97482380 97482433 -58147687 - MIR3 SINE MIR -6 202 150 6 1328 215 363 52 38 chr4 97485983 97486117 -58144003 - MIRm SINE MIR -117 159 20 6 1328 252 295 63 28 chr4 97486112 97486255 -58143865 - L3 LINE CR1 -124 4365 4218 6 1328 278 311 129 23 chr4 97486688 97486859 -58143261 - L3 LINE CR1 -986 3503 3315 6 1328 21 57 0 0 chr4 97486908 97486943 -58143177 + AT_rich Low_complexity Low_complexity 1 35 0 6 1328 809 270 7 13 chr4 97489305 97489472 -58140648 + B3 SINE B2 1 164 -52 6 1328 351 0 0 0 chr4 97489472 97489511 -58140609 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1328 473 299 41 88 chr4 97489511 97489537 -58140583 + B2_Mm2 SINE B2 157 185 -10 6 1328 218 216 0 13 chr4 97489579 97489654 -58140466 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 6 1328 189 147 0 0 chr4 97490729 97490763 -58139357 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 6 1328 341 301 39 10 chr4 97491915 97492019 -58138101 + L2a LINE L2 3308 3414 -12 6 1328 21 57 0 0 chr4 97492156 97492191 -58137929 + AT_rich Low_complexity Low_complexity 1 35 0 6 1328 237 108 0 0 chr4 97492218 97492255 -58137865 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1328 442 289 74 0 chr4 97492286 97492407 -58137713 - RSINE1 SINE B4 -33 132 3 6 1328 387 0 0 0 chr4 97492542 97492585 -58137535 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1328 308 187 0 32 chr4 97493006 97493067 -58137053 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1328 498 57 0 0 chr4 97493067 97493137 -58136983 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1328 308 187 0 32 chr4 97493137 97493169 -58136951 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1328 226 360 66 61 chr4 97494516 97494714 -58135406 + MIRb SINE MIR 40 238 -30 6 1328 321 26 0 0 chr4 97494773 97494811 -58135309 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1328 251 286 166 35 chr4 97495118 97495263 -58134857 - MIRb SINE MIR -10 252 89 6 1328 207 229 98 62 chr4 97495453 97495565 -58134555 - MER5B DNA MER1_type -62 116 1 6 1328 1282 61 0 0 chr4 97495895 97496042 -58134078 + B1_Mus2 SINE Alu 1 147 0 6 1328 393 177 0 0 chr4 97496042 97496121 -58133999 + A-rich Low_complexity Low_complexity 1 79 0 6 1328 214 307 56 22 chr4 97496184 97496274 -58133846 + MIRc SINE MIR 48 140 -128 6 1328 370 323 50 25 chr4 97497689 97497848 -58132272 + L3 LINE CR1 3741 3903 -586 6 1328 183 200 96 39 chr4 97498287 97498339 -58131781 - L3 LINE CR1 -3518 971 917 6 1328 324 287 118 79 chr4 97500611 97500789 -58129331 + MER5A DNA MER1_type 4 188 -1 1 1328 249 108 0 0 chr4 97500889 97500926 -58129194 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1328 240 330 42 34 chr4 97501037 97501156 -58128964 + MIRb SINE MIR 27 146 -122 3 1328 365 250 9 46 chr4 97501817 97501926 -58128194 - L2a LINE L2 -1 3425 3321 4 1328 348 261 125 66 chr4 97502192 97502344 -58127776 - MLT1D LTR MaLR -4 501 303 5 1328 246 62 0 0 chr4 97502504 97502536 -58127584 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1328 1358 157 9 26 chr4 97508798 97509027 -58121093 + URR1B DNA MER1_type 1 225 0 7 1328 740 296 79 0 chr4 97509521 97509710 -58120410 - 7SLRNA srpRNA srpRNA -109 205 2 8 1328 541 273 0 0 chr4 97510012 97510122 -58119998 + RSINE1 SINE B4 3 112 -53 9 1328 22 80 0 0 chr4 97510213 97510263 -58119857 + AT_rich Low_complexity Low_complexity 1 50 0 1 1328 254 259 35 0 chr4 97510316 97510374 -58119746 - MIR3 SINE MIR -22 186 127 1 1328 239 0 0 31 chr4 97512336 97512368 -58117752 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1 1328 228 67 0 0 chr4 97512370 97512400 -58117720 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1 1328 318 312 0 44 chr4 97513556 97513670 -58116450 + MIRc SINE MIR 109 217 -51 1 1328 1161 43 0 0 chr4 97514278 97514416 -58115704 + L1_Mus1 LINE L1 6430 6567 0 1 1328 423 132 0 0 chr4 97514728 97514796 -58115324 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1328 213 119 0 0 chr4 97515500 97515542 -58114578 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1328 244 303 30 0 chr4 97516664 97516730 -58113390 - ID4 SINE ID -1 82 15 1 1328 806 263 11 0 chr4 97517145 97517320 -58112800 - B3 SINE B2 -1 215 39 1 1329 21 0 0 0 chr4 97518356 97518377 -58111743 + AT_rich Low_complexity Low_complexity 1 21 0 2 1329 228 298 81 47 chr4 97519533 97519681 -58110439 + CR1_Mam LINE CR1 1607 1759 -445 2 1329 2431 58 13 13 chr4 97520679 97520995 -58109125 - L1Md_F2 LINE L1 -2 6580 6265 2 1329 342 156 109 0 chr4 97522438 97522502 -58107618 - MTE2a LTR MaLR -17 362 292 2 1329 692 291 50 21 chr4 97525251 97525490 -58104630 - MIRc SINE MIR 0 268 23 2 1329 264 208 111 0 chr4 97526814 97526886 -58103234 + ID2 SINE ID 3 82 -1 2 1329 581 100 11 0 chr4 97526904 97526994 -58103126 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 2 1329 213 247 22 11 chr4 97526995 97527085 -58103035 + A-rich Low_complexity Low_complexity 1 91 0 2 1329 223 143 41 0 chr4 97526998 97527047 -58103073 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1329 821 269 46 28 chr4 97528083 97528301 -58101819 - B4A SINE B4 -21 271 50 2 1329 208 143 0 0 chr4 97528999 97529034 -58101086 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1329 346 298 28 28 chr4 97529982 97530089 -58100031 - LTR16E1 LTR ERVL -5 533 427 3 1329 202 369 0 0 chr4 97530551 97530616 -58099504 + MIRc SINE MIR 96 160 -108 3 1329 395 260 146 0 chr4 97532009 97532105 -58098015 + PB1D10 SINE Alu 1 110 -7 3 1329 25 0 0 0 chr4 97533103 97533128 -58096992 + AT_rich Low_complexity Low_complexity 1 25 0 3 1329 1035 142 7 20 chr4 97533781 97533932 -58096188 + B1_Mur3 SINE Alu 1 149 0 3 1329 214 73 49 0 chr4 97533936 97533977 -58096143 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1329 22 99 0 0 chr4 97534015 97534086 -58096034 + AT_rich Low_complexity Low_complexity 1 71 0 3 1329 289 269 43 61 chr4 97534473 97534588 -58095532 + B1F SINE Alu 36 148 -1 3 1329 252 308 13 13 chr4 97534601 97534680 -58095440 + BC1_Mm scRNA scRNA 9 87 -65 3 1329 25 31 0 0 chr4 97536184 97536216 -58093904 + AT_rich Low_complexity Low_complexity 1 32 0 4 1329 198 0 0 0 chr4 97536769 97536791 -58093329 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1329 290 312 161 32 chr4 97536820 97537143 -58092977 + L2c LINE L2 2782 3139 -248 4 1329 237 338 0 0 chr4 97538039 97538110 -58092010 + MIRb SINE MIR 184 254 -14 4 1329 181 119 48 0 chr4 97540562 97540604 -58089516 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1329 561 295 67 62 chr4 97540622 97540817 -58089303 - B3A SINE B2 -2 196 1 4 1329 210 147 0 0 chr4 97542991 97543025 -58087095 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4 1329 422 270 120 49 chr4 97543731 97543914 -58086206 + MIRb SINE MIR 38 233 -35 4 1329 552 53 0 0 chr4 97545904 97545980 -58084140 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1329 270 0 0 0 chr4 97546870 97546900 -58083220 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1329 180 345 86 8 chr4 97548015 97548132 -58081988 - MIRb SINE MIR -113 155 30 5 1329 318 26 0 0 chr4 97548173 97548212 -58081908 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1329 26 50 0 0 chr4 97548425 97548465 -58081655 + AT_rich Low_complexity Low_complexity 1 40 0 5 1329 548 264 16 0 chr4 97548834 97548955 -58081165 - PB1 SINE Alu -4 123 1 5 1329 199 304 45 73 chr4 97549186 97549367 -58080753 + MIR SINE MIR 53 257 -5 5 1329 841 227 13 0 chr4 97550939 97551089 -58079031 + RSINE1 SINE B4 3 154 -11 5 1329 234 0 0 0 chr4 97551428 97551454 -58078666 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1329 1113 74 15 0 chr4 97551454 97551589 -58078531 - B1_Mus1 SINE Alu -10 138 2 5 1329 456 51 0 0 chr4 97551804 97551863 -58078257 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1329 372 22 0 0 chr4 97551863 97551907 -58078213 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1329 208 322 86 32 chr4 97553140 97553233 -58076887 + L2c LINE L2 3272 3369 -18 6 1329 324 283 10 39 chr4 97554451 97554554 -58075566 - MIR SINE MIR -118 144 45 6 1329 1578 207 76 7 chr4 97554621 97554759 -58075361 - RCHARR1 DNA MER1_type -8 966 816 6 1329 276 30 0 0 chr4 97554759 97554792 -58075328 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1329 1578 207 76 7 chr4 97554792 97555085 -58075035 - RCHARR1 DNA MER1_type -159 815 506 6 1329 975 294 108 6 chr4 97555092 97555427 -58074693 - RCHARR1 DNA MER1_type -603 371 3 6 1329 546 320 106 23 chr4 97555692 97555957 -58074163 + B4A SINE B4 2 288 -4 6 1329 222 270 16 0 chr4 97555965 97556028 -58074092 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1329 224 296 150 20 chr4 97556641 97556741 -58073379 + PB1 SINE Alu 13 125 -2 6 1329 707 154 0 7 chr4 97557460 97557494 -58072626 + polypyrimidine Low_complexity Low_complexity 104 137 0 6 1329 324 0 0 0 chr4 97557494 97557530 -58072590 + (TAA)n Simple_repeat Simple_repeat 3 38 0 6 1329 707 154 0 7 chr4 97557530 97557632 -58072488 + polypyrimidine Low_complexity Low_complexity 2 103 0 6 1329 392 280 192 27 chr4 97557639 97557826 -58072294 - ID_B1 SINE B4 -5 219 2 7 1329 677 283 15 35 chr4 97559676 97559874 -58070246 + B3A SINE B2 1 194 -4 7 1329 207 108 81 0 chr4 97560658 97560695 -58069425 + A-rich Low_complexity Low_complexity 3 42 0 7 1329 302 246 0 0 chr4 97560711 97560776 -58069344 - ID4 SINE ID -17 66 2 7 1329 237 235 0 0 chr4 97560807 97560858 -58069262 + ID4_ SINE ID 30 80 -3 7 1329 357 240 13 0 chr4 97561458 97561533 -58068587 - ID4_ SINE ID -6 77 2 7 1329 422 108 14 0 chr4 97561633 97561707 -58068413 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 7 1329 752 323 70 7 chr4 97565208 97565479 -58064641 + B4 SINE B4 1 288 -4 7 1329 238 289 58 66 chr4 97567824 97567961 -58062159 + Charlie4z DNA MER1_type 23 158 -9 7 1329 238 338 42 76 chr4 97569783 97569927 -58060193 - RMER12 LTR ERVK -466 856 718 7 1329 677 210 165 6 chr4 97570185 97570367 -58059753 + B3 SINE B2 1 211 -5 8 1329 237 204 0 0 chr4 97570604 97570648 -58059472 + (CGTG)n Simple_repeat Simple_repeat 2 45 0 8 1329 552 281 40 81 chr4 97570657 97570955 -58059165 - B4 SINE B4 -6 286 1 8 1329 25 31 0 0 chr4 97570999 97571031 -58059089 + AT_rich Low_complexity Low_complexity 1 32 0 8 1329 180 0 0 0 chr4 97571148 97571168 -58058952 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1329 213 65 0 0 chr4 97572380 97572411 -58057709 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1329 22 0 0 0 chr4 97575017 97575039 -58055081 + AT_rich Low_complexity Low_complexity 1 22 0 8 1329 420 176 19 10 chr4 97575130 97575233 -58054887 + GA-rich Low_complexity Low_complexity 4 107 0 8 1329 320 297 37 52 chr4 97575986 97576121 -58053999 + B1F SINE Alu 17 149 0 8 1329 383 181 28 0 chr4 97578227 97578299 -58051821 + L4 LINE RTE 1755 1828 -201 8 1329 22 0 0 0 chr4 97578813 97578835 -58051285 + AT_rich Low_complexity Low_complexity 1 22 0 9 1329 188 301 96 17 chr4 97581321 97581436 -58048684 + L2 LINE L2 2741 2864 -555 9 1329 235 315 33 22 chr4 97583246 97583261 -58046859 - B4A SINE B4 -198 94 7 9 1329 353 200 14 28 chr4 97583261 97583333 -58046787 - ID2 SINE ID -4 79 9 9 1329 207 288 49 24 chr4 97583959 97584041 -58046079 + MIR SINE MIR 89 172 -90 9 1329 351 0 0 0 chr4 97584741 97584780 -58045340 + (CTTG)n Simple_repeat Simple_repeat 1 39 0 9 1329 258 32 0 0 chr4 97585768 97585799 -58044321 + (TAAG)n Simple_repeat Simple_repeat 2 32 0 9 1329 209 135 0 26 chr4 97586720 97586758 -58043362 + (TTA)n Simple_repeat Simple_repeat 1 37 0 9 1329 522 0 0 0 chr4 97587046 97587104 -58043016 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1329 554 250 66 72 chr4 97588413 97588594 -58041526 + B3A SINE B2 1 180 -18 9 1329 201 230 0 0 chr4 97588597 97588671 -58041449 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1329 22 56 0 0 chr4 97588724 97588760 -58041360 + AT_rich Low_complexity Low_complexity 1 36 0 1 1329 237 33 0 0 chr4 97590464 97590494 -58039626 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1329 189 171 0 0 chr4 97591839 97591874 -58038246 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 1329 816 301 40 7 chr4 97592381 97592655 -58037465 + B4A SINE B4 4 286 -6 1 1329 359 194 10 0 chr4 97592681 97592779 -58037341 + CT-rich Low_complexity Low_complexity 2 100 0 1 1329 21 0 0 0 chr4 97594885 97594906 -58035214 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 252 0 0 0 chr4 97597097 97597125 -58032995 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1329 21 0 0 0 chr4 97597801 97597822 -58032298 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 441 0 0 0 chr4 97599758 97599807 -58030313 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1329 234 191 0 0 chr4 97599935 97599982 -58030138 + GA-rich Low_complexity Low_complexity 2 48 0 1 1329 373 374 80 22 chr4 97601025 97601169 -58028951 + Tigger13a DNA MER2_type 294 449 -322 1 1329 1330 76 49 0 chr4 97601169 97601353 -58028767 - B2_Mm2 SINE B2 -2 193 1 1 1329 373 374 80 22 chr4 97601353 97601520 -58028600 + Tigger13a DNA MER2_type 450 623 -148 1 1329 616 289 120 19 chr4 97604676 97604934 -58025186 - B4A SINE B4 -8 284 1 1 1329 272 322 0 11 chr4 97605619 97605707 -58024413 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1329 707 294 49 0 chr4 97605730 97605914 -58024206 - B4A SINE B4 -99 193 1 1 1329 27 0 0 0 chr4 97607667 97607694 -58022426 + AT_rich Low_complexity Low_complexity 1 27 0 1 1329 694 166 20 13 chr4 97607877 97608030 -58022090 - Lx7 LINE L1 -2 7694 7541 1 1329 227 253 52 26 chr4 97609382 97609459 -58020661 - MTEa LTR MaLR 0 379 301 1 1329 387 0 0 0 chr4 97610344 97610387 -58019733 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 1329 336 264 50 50 chr4 97610500 97610662 -58019458 + B4A SINE B4 129 286 -6 1 1329 264 100 0 0 chr4 97610731 97610771 -58019349 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1329 252 366 0 0 chr4 97612358 97612440 -58017680 + ID4_ SINE ID 2 83 0 1 1329 872 220 118 0 chr4 97612453 97612639 -58017481 + B3 SINE B2 3 210 -6 1 1329 205 204 18 18 chr4 97615074 97615129 -58014991 + C-rich Low_complexity Low_complexity 5 59 0 1 1329 22 0 0 0 chr4 97615640 97615662 -58014458 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 356 250 12 23 chr4 97616360 97616446 -58013674 - MIR SINE MIR -76 186 102 1 1329 309 68 0 0 chr4 97618702 97618746 -58011374 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1329 450 0 0 0 chr4 97619849 97619899 -58010221 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 1329 21 36 0 0 chr4 97622186 97622214 -58007906 + AT_rich Low_complexity Low_complexity 1 28 0 1 1329 26 82 0 0 chr4 97622349 97622410 -58007710 + AT_rich Low_complexity Low_complexity 1 61 0 1 1329 423 38 0 0 chr4 97622853 97622906 -58007214 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1329 361 281 6 0 chr4 97623602 97623703 -58006417 - ID4_ SINE ID -42 110 8 1 1329 431 0 37 0 chr4 97624144 97624198 -58005922 + (TCTCC)n Simple_repeat Simple_repeat 3 58 0 1 1329 597 28 0 0 chr4 97624452 97624523 -58005597 + (TTTTC)n Simple_repeat Simple_repeat 1 71 0 1 1329 378 0 0 0 chr4 97624597 97624639 -58005481 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1329 477 0 0 0 chr4 97624639 97624691 -58005429 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1329 330 26 0 0 chr4 97625217 97625256 -58004864 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1329 405 54 0 0 chr4 97625262 97625318 -58004802 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1329 250 192 57 19 chr4 97626011 97626064 -58004056 + MIR SINE MIR 5 59 -203 1 1329 304 258 30 0 chr4 97626634 97626700 -58003420 + ID4 SINE ID 4 71 -12 1 1329 208 250 0 0 chr4 97626708 97626764 -58003356 + A-rich Low_complexity Low_complexity 1 56 0 1 1329 713 325 69 38 chr4 97631521 97631838 -57998282 - LTR16B LTR ERVL -102 361 35 1 1329 334 323 121 0 chr4 97631852 97631976 -57998144 - MIR SINE MIR -38 224 86 1 1329 461 154 11 0 chr4 97632347 97632438 -57997682 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 1329 201 323 0 58 chr4 97635802 97635871 -57994249 - L2a LINE L2 0 3426 3362 1 1329 303 286 48 67 chr4 97636398 97636503 -57993617 + PB1D10 SINE Alu 15 117 0 1 1329 22 0 0 0 chr4 97637376 97637398 -57992722 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 392 0 21 0 chr4 97638285 97638333 -57991787 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1 1329 252 317 50 0 chr4 97639598 97639699 -57990421 + MIRc SINE MIR 18 123 -145 1 1329 552 314 145 0 chr4 97639852 97640059 -57990061 + B4A SINE B4 1 237 -55 1 1329 22 0 0 0 chr4 97640148 97640170 -57989950 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 416 284 0 0 chr4 97640208 97640296 -57989824 + RSINE1 SINE B4 61 148 -17 1 1329 359 263 13 0 chr4 97641355 97641431 -57988689 + ID4_ SINE ID 1 77 -6 1 1329 208 184 41 0 chr4 97642004 97642053 -57988067 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 1 1329 629 305 82 31 chr4 97642147 97642441 -57987679 - L4 LINE RTE -119 1910 1602 1 1329 201 39 0 0 chr4 97642995 97643021 -57987099 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1329 558 176 16 9 chr4 97643021 97643128 -57986992 - B1_Mur4 SINE Alu -10 140 1 1 1329 308 271 35 0 chr4 97644405 97644490 -57985630 - MIR SINE MIR -109 153 66 1 1329 879 194 3 0 chr4 97644823 97645114 -57985006 + GA-rich Low_complexity Low_complexity 1 292 0 1 1329 459 0 0 0 chr4 97645508 97645559 -57984561 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1 1329 593 243 84 19 chr4 97646404 97646618 -57983502 + L1MA6 LINE L1 6073 6300 0 1 1329 857 316 104 18 chr4 97647836 97648171 -57981949 + MLT1A0 LTR MaLR 2 365 0 1 1330 194 338 67 37 chr4 97649255 97649390 -57980730 + MIRc SINE MIR 64 202 -66 1 1330 531 0 0 0 chr4 97649711 97649770 -57980350 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1330 524 226 39 0 chr4 97650047 97650149 -57979971 - RSINE1 SINE B4 -52 113 8 1 1330 324 0 0 0 chr4 97650515 97650551 -57979569 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1330 314 229 0 10 chr4 97651048 97651145 -57978975 + CT-rich Low_complexity Low_complexity 1 96 0 1 1330 497 300 66 35 chr4 97651427 97651624 -57978496 - MER20 DNA MER1_type 0 219 17 1 1330 681 137 0 0 chr4 97651643 97651760 -57978360 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 1330 184 255 29 67 chr4 97652052 97652157 -57977963 - MIR SINE MIR -78 130 30 1 1330 348 24 0 0 chr4 97652597 97652638 -57977482 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1330 693 262 5 47 chr4 97652688 97652880 -57977240 - B4A SINE B4 -3 289 106 1 1330 189 147 0 0 chr4 97654759 97654793 -57975327 + (CATG)n Simple_repeat Simple_repeat 1 34 0 1 1330 21 0 0 0 chr4 97656318 97656339 -57973781 + AT_rich Low_complexity Low_complexity 1 21 0 1 1330 1219 56 14 0 chr4 97656339 97656483 -57973637 - B1_Mus1 SINE Alu -1 147 2 1 1330 219 309 53 38 chr4 97656724 97656855 -57973265 - MIRb SINE MIR -7 261 129 1 1330 447 19 0 0 chr4 97657901 97657953 -57972167 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1330 186 43 0 0 chr4 97658605 97658628 -57971492 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1330 251 237 48 95 chr4 97660283 97660367 -57969753 - MLT-int LTR MaLR -1052 683 604 1 1330 180 211 0 0 chr4 97661421 97661459 -57968661 - L3 LINE CR1 -2471 2018 1981 1 1330 280 320 199 35 chr4 97664315 97664626 -57965494 + L2c LINE L2 3026 3387 0 1 1330 240 163 0 0 chr4 97666667 97666710 -57963410 + CT-rich Low_complexity Low_complexity 3 45 0 1 1330 1351 194 182 20 chr4 97669394 97669751 -57960369 - MTD LTR MaLR -4 415 1 1 1330 22 35 0 0 chr4 97673234 97673263 -57956857 + AT_rich Low_complexity Low_complexity 1 29 0 1 1330 186 43 0 0 chr4 97674251 97674274 -57955846 + (TTG)n Simple_repeat Simple_repeat 3 25 0 1 1330 396 0 0 0 chr4 97675350 97675394 -57954726 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1330 206 385 64 0 chr4 97676574 97676683 -57953437 + L2a LINE L2 3303 3418 -8 1 1330 237 119 0 0 chr4 97681185 97681227 -57948893 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1330 248 222 31 31 chr4 97682582 97682647 -57947473 + GA-rich Low_complexity Low_complexity 4 68 0 1 1330 204 40 0 0 chr4 97682935 97682960 -57947160 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1 1330 260 291 11 23 chr4 97683048 97683136 -57946984 - MIRc SINE MIR -136 132 46 1 1330 228 331 16 40 chr4 97684893 97684928 -57945192 - L4 LINE RTE -196 1833 1802 1 1330 3204 53 13 0 chr4 97684928 97685323 -57944797 - MTB LTR MaLR 0 400 1 1 1330 228 331 16 40 chr4 97685323 97685413 -57944707 - L4 LINE RTE -228 1801 1711 1 1330 286 244 22 34 chr4 97687812 97687901 -57942219 - PB1 SINE Alu -3 124 37 1 1330 387 0 0 0 chr4 97687908 97687951 -57942169 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1330 390 129 0 0 chr4 97687953 97688015 -57942105 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1330 228 67 0 0 chr4 97688176 97688206 -57941914 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1330 387 331 15 0 chr4 97691607 97691743 -57938377 + L2a LINE L2 3289 3426 0 1 1330 238 232 11 79 chr4 97691999 97692088 -57938032 + L1MA6 LINE L1 6107 6189 -111 1 1330 469 269 19 0 chr4 97694017 97694125 -57935995 + PB1D10 SINE Alu 1 110 -7 2 1330 235 303 0 15 chr4 97694846 97694913 -57935207 + L2a LINE L2 3361 3426 0 2 1330 223 167 16 32 chr4 97696553 97696615 -57933505 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2 1330 216 0 0 0 chr4 97698113 97698137 -57931983 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1330 1132 204 14 9 chr4 97701925 97702148 -57927972 + URR1B DNA MER1_type 1 224 -1 2 1330 1033 223 5 0 chr4 97702448 97702650 -57927470 + B3 SINE B2 1 203 -13 2 1330 276 30 0 0 chr4 97702650 97702683 -57927437 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 2 1330 511 266 94 12 chr4 97703257 97703501 -57926619 - MLT1E1A LTR MaLR -2 678 415 2 1330 234 0 0 0 chr4 97704007 97704033 -57926087 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1330 395 127 0 27 chr4 97706262 97706335 -57923785 + GA-rich Low_complexity Low_complexity 4 74 0 2 1330 189 154 0 0 chr4 97707320 97707359 -57922761 + T-rich Low_complexity Low_complexity 1 39 0 2 1330 186 103 0 0 chr4 97709473 97709502 -57920618 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1330 309 109 0 0 chr4 97709502 97709547 -57920573 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1330 190 307 39 19 chr4 97710258 97710361 -57919759 + MIR SINE MIR 47 151 -111 2 1330 2288 262 76 51 chr4 97710726 97711013 -57919107 - RCHARR1 DNA MER1_type -92 882 623 2 1330 312 91 0 0 chr4 97711013 97711057 -57919063 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1330 2288 262 76 51 chr4 97711057 97711627 -57918493 - RCHARR1 DNA MER1_type -352 622 4 2 1330 509 310 41 7 chr4 97711692 97711838 -57918282 - RSINE1 SINE B4 -1 164 14 2 1330 246 315 110 0 chr4 97712152 97712279 -57917841 + B1F2 SINE Alu 1 141 -8 2 1330 198 150 0 0 chr4 97712379 97712419 -57917701 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1330 231 288 87 16 chr4 97712490 97712617 -57917503 + ORR1E LTR MaLR 3 138 -221 2 1330 527 338 32 32 chr4 97713074 97713230 -57916890 - RSINE1 SINE B4 -6 159 4 2 1330 231 36 0 0 chr4 97714469 97714497 -57915623 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1330 261 0 0 0 chr4 97714499 97714528 -57915592 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1330 372 247 187 27 chr4 97714927 97715114 -57915006 - L1M4 LINE L1 -576 5608 5392 2 1330 387 0 0 0 chr4 97715117 97715160 -57914960 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1330 203 320 48 48 chr4 97715472 97715577 -57914543 + L2c LINE L2 3283 3387 0 2 1330 24 0 0 0 chr4 97715625 97715649 -57914471 + AT_rich Low_complexity Low_complexity 1 24 0 2 1330 754 208 25 18 chr4 97715748 97715935 -57914185 + B3 SINE B2 1 188 -5 2 1330 1214 225 105 12 chr4 97719611 97719935 -57910185 - ORR1E LTR MaLR 0 359 6 2 1330 1531 230 69 13 chr4 97720599 97720978 -57909142 - MTD LTR MaLR -19 400 1 2 1330 1107 230 0 4 chr4 97723306 97723533 -57906587 + URR1A DNA MER1_type 1 226 0 2 1330 750 78 10 0 chr4 97726469 97726571 -57903549 - L1_Mus1 LINE L1 -572 5994 5892 2 1330 4592 64 17 7 chr4 97726571 97727168 -57902952 + L1_Mus1 LINE L1 5965 6567 0 2 1330 1190 55 0 0 chr4 97728207 97728352 -57901768 - B1_Mus1 SINE Alu 0 148 4 2 1330 198 304 83 42 chr4 97733937 97734033 -57896087 + MIRc SINE MIR 110 209 -59 2 1330 286 368 15 39 chr4 97735205 97735335 -57894785 - L2 LINE L2 -743 2676 2550 2 1330 595 230 32 0 chr4 97735562 97735688 -57894432 + B1_Mur2 SINE Alu 2 131 -18 2 1330 330 294 19 106 chr4 97735688 97735716 -57894404 + ID_B1 SINE B4 100 224 0 2 1330 1811 195 9 3 chr4 97736346 97736681 -57893439 - MTD LTR MaLR 0 419 83 2 1330 180 370 66 12 chr4 97736764 97736931 -57893189 - MIR SINE MIR -62 200 25 2 1330 1143 68 0 7 chr4 97736996 97737143 -57892977 + B1_Mm SINE Alu 2 147 0 2 1330 366 61 0 0 chr4 97737634 97737683 -57892437 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1330 764 194 62 50 chr4 97737683 97737862 -57892258 - ORR1D1 LTR MaLR -193 181 1 2 1330 21 0 0 0 chr4 97738102 97738123 -57891997 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 547 323 6 0 chr4 97739257 97739401 -57890719 + RSINE1 SINE B4 4 148 -17 2 1330 225 65 0 0 chr4 97739401 97739432 -57890688 + (CGTG)n Simple_repeat Simple_repeat 3 33 0 2 1330 547 323 6 0 chr4 97739432 97739448 -57890672 + RSINE1 SINE B4 149 164 -1 2 1330 232 209 14 56 chr4 97739593 97739664 -57890456 - MIRb SINE MIR -183 85 18 2 1330 234 234 189 20 chr4 97740026 97740174 -57889946 - L1ME4a LINE L1 -6 6118 5946 2 1330 230 315 41 0 chr4 97740912 97740985 -57889135 + PB1D10 SINE Alu 33 108 -9 2 1330 375 323 8 0 chr4 97741576 97741700 -57888420 - L1ME4a LINE L1 -378 5746 5622 2 1330 408 71 0 0 chr4 97744250 97744306 -57885814 + (TCC)n Simple_repeat Simple_repeat 3 58 0 2 1330 576 215 0 0 chr4 97744629 97744792 -57885328 + GA-rich Low_complexity Low_complexity 1 163 0 2 1330 521 183 21 14 chr4 97745692 97745836 -57884284 + CT-rich Low_complexity Low_complexity 1 145 0 2 1330 573 308 1 41 chr4 97747335 97747547 -57882573 + B3A SINE B2 14 211 -5 2 1330 276 267 15 8 chr4 97750537 97750669 -57879451 + (TG)n Simple_repeat Simple_repeat 1 133 0 2 1330 569 271 21 7 chr4 97750719 97750860 -57879260 - B1F SINE Alu -6 143 1 2 1330 513 179 42 51 chr4 97751131 97751249 -57878871 + PB1D10 SINE Alu 1 117 0 2 1330 309 328 12 0 chr4 97751464 97751606 -57878514 + L1MB3 LINE L1 5772 5919 -381 2 1330 355 195 37 0 chr4 97753178 97753260 -57876860 + PB1D10 SINE Alu 12 96 -21 2 1330 180 77 0 0 chr4 97753704 97753730 -57876390 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 2 1330 470 58 29 0 chr4 97754283 97754352 -57875768 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2 1330 630 135 13 38 chr4 97754689 97754932 -57875188 + (TA)n Simple_repeat Simple_repeat 1 236 0 2 1330 231 322 78 65 chr4 97754936 97755089 -57875031 - MIRc SINE MIR -66 202 48 2 1330 1206 61 0 0 chr4 97755605 97755769 -57874351 + (CA)n Simple_repeat Simple_repeat 1 164 0 2 1330 2959 226 91 32 chr4 97755887 97756796 -57873324 - RCHARR1 DNA MER1_type -4 970 8 2 1330 225 277 24 24 chr4 97757170 97757255 -57872865 - MLT1L LTR MaLR -180 430 346 2 1330 1140 101 0 0 chr4 97757661 97757839 -57872281 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1330 495 33 0 0 chr4 97757861 97757922 -57872198 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1330 441 0 0 0 chr4 97758831 97758880 -57871240 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1330 186 71 0 0 chr4 97760806 97760834 -57869286 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1330 270 0 0 0 chr4 97762473 97762503 -57867617 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1330 994 169 27 55 chr4 97762981 97763200 -57866920 - URR1B DNA MER1_type -12 213 1 2 1330 414 101 0 0 chr4 97763424 97763493 -57866627 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1330 405 0 0 0 chr4 97765348 97765393 -57864727 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1330 461 279 8 23 chr4 97768347 97768479 -57861641 + ID_B1 SINE B4 93 222 -2 2 1330 275 0 0 28 chr4 97769013 97769049 -57861071 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 1330 240 236 18 0 chr4 97769402 97769457 -57860663 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1330 586 244 7 22 chr4 97771507 97771645 -57858475 + RSINE1 SINE B4 6 141 -24 2 1330 462 18 0 0 chr4 97771645 97771700 -57858420 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1330 21 0 0 0 chr4 97771701 97771722 -57858398 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 297 0 0 0 chr4 97772994 97773027 -57857093 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1330 210 136 0 0 chr4 97773029 97773073 -57857047 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1330 390 91 0 0 chr4 97774504 97774559 -57855561 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2 1330 258 105 0 0 chr4 97775096 97775134 -57854986 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1330 1119 8 0 0 chr4 97775695 97775823 -57854297 + (CTTTG)n Simple_repeat Simple_repeat 2 129 0 2 1330 198 0 0 0 chr4 97776287 97776309 -57853811 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2 1330 1127 88 0 0 chr4 97776902 97777049 -57853071 + B1_Mus1 SINE Alu 2 148 0 2 1330 444 82 0 0 chr4 97777049 97777110 -57853010 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1330 729 88 0 0 chr4 97777111 97777213 -57852907 + (GGGGA)n Simple_repeat Simple_repeat 5 106 0 2 1330 327 104 0 0 chr4 97778119 97778167 -57851953 + (T)n Simple_repeat Simple_repeat 1 48 0 2 1330 291 85 0 0 chr4 97778669 97778716 -57851404 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1330 224 224 0 0 chr4 97779052 97779110 -57851010 + A-rich Low_complexity Low_complexity 1 58 0 2 1330 291 193 0 0 chr4 97779505 97779588 -57850532 + A-rich Low_complexity Low_complexity 1 83 0 2 1331 327 85 0 0 chr4 97780361 97780408 -57849712 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1331 468 91 0 0 chr4 97780956 97781022 -57849098 + (A)n Simple_repeat Simple_repeat 1 66 0 2 1331 212 222 28 0 chr4 97782586 97782658 -57847462 + T-rich Low_complexity Low_complexity 3 76 0 2 1331 182 207 17 0 chr4 97782727 97782785 -57847335 + CT-rich Low_complexity Low_complexity 2 60 0 2 1331 313 52 51 17 chr4 97783840 97783899 -57846221 + (TTTTG)n Simple_repeat Simple_repeat 3 63 0 2 1331 230 0 0 32 chr4 97784290 97784321 -57845799 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1331 24 0 0 0 chr4 97786705 97786729 -57843391 + AT_rich Low_complexity Low_complexity 1 24 0 2 1331 382 294 67 54 chr4 97787065 97787376 -57842744 - ORR1E LTR MaLR -53 317 1 2 1331 268 235 88 0 chr4 97787582 97787650 -57842470 - MLT1I LTR MaLR -234 177 104 2 1331 234 320 182 23 chr4 97788102 97788278 -57841842 + MIR SINE MIR 6 209 -53 3 1331 208 360 31 39 chr4 97788485 97788615 -57841505 + MIRb SINE MIR 122 250 -18 3 1331 245 347 126 0 chr4 97788705 97788800 -57841320 + PB1D10 SINE Alu 3 109 -8 3 1331 231 88 0 0 chr4 97788824 97788858 -57841262 + (GGA)n Simple_repeat Simple_repeat 2 35 0 3 1331 309 109 0 0 chr4 97789722 97789777 -57840343 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1331 341 271 26 136 chr4 97789857 97790011 -57840109 - B1F SINE Alu -1 148 12 3 1331 329 281 64 23 chr4 97790149 97790320 -57839800 - L1MC5 LINE L1 -181 7780 7603 3 1331 837 246 20 0 chr4 97790349 97790544 -57839576 + B3 SINE B2 5 203 -13 3 1331 639 167 418 0 chr4 97790707 97790930 -57839190 + ORR1D1 LTR MaLR 58 374 0 3 1331 193 339 39 24 chr4 97791336 97791463 -57838657 - L2c LINE L2 -11 3376 3248 3 1331 482 299 137 74 chr4 97791548 97791884 -57838236 - MLT1A LTR MaLR -17 357 1 3 1331 508 254 37 7 chr4 97792563 97792698 -57837422 + LTR33 LTR ERVL 375 513 -2 3 1331 217 302 50 25 chr4 97792949 97793068 -57837052 - L3b LINE CR1 -166 316 195 3 1331 403 295 77 50 chr4 97793471 97793653 -57836467 - MLT1B LTR MaLR -24 366 180 3 1331 327 230 40 0 chr4 97793974 97794048 -57836072 + B3A SINE B2 1 77 -121 3 1331 457 325 94 88 chr4 97794208 97794279 -57835841 - MLT1A LTR MaLR -26 348 265 3 1331 1959 159 90 8 chr4 97794279 97794634 -57835486 - ORR1C2 LTR MaLR 0 384 1 3 1331 457 325 94 88 chr4 97794634 97794903 -57835217 - MLT1A LTR MaLR -110 264 6 3 1331 1234 324 67 31 chr4 97794922 97795703 -57834417 + L1MC LINE L1 4312 5120 -1026 3 1331 431 172 37 83 chr4 97795728 97795836 -57834284 + MT2B LTR ERVL 155 257 -344 3 1331 840 108 0 61 chr4 97795742 97795890 -57834230 + B1_Mus1 SINE Alu 10 148 0 3 1331 243 300 195 21 chr4 97796481 97796866 -57833254 + L1M5 LINE L1 3430 3881 -2265 3 1331 342 0 0 0 chr4 97796899 97796937 -57833183 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1331 298 356 68 39 chr4 97798711 97799047 -57831073 + ORR1E LTR MaLR 2 347 -12 3 1331 2212 141 108 18 chr4 97799224 97799678 -57830442 + RLTR24 LTR ERV1 1 495 -34 3 1331 852 281 101 21 chr4 97799806 97800144 -57829976 - MLT1B LTR MaLR -25 365 1 3 1331 257 273 0 0 chr4 97800191 97800246 -57829874 - MurSatRep1 Unknown Unknown -1853 284 230 3 1331 348 269 107 25 chr4 97801038 97801160 -57828960 + RSINE1 SINE B4 3 134 -31 3 1331 524 15 15 0 chr4 97801165 97801230 -57828890 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1331 24 0 0 0 chr4 97801239 97801263 -57828857 + AT_rich Low_complexity Low_complexity 1 24 0 3 1331 248 325 24 61 chr4 97803025 97803189 -57826931 - MIRb SINE MIR -11 257 100 3 1331 205 347 10 58 chr4 97803225 97803329 -57826791 + MIRb SINE MIR 24 122 -146 3 1331 769 282 127 25 chr4 97804215 97804538 -57825582 - RMER15 LTR ERVL 0 575 220 3 1331 3707 79 0 0 chr4 97804878 97805349 -57824771 - L1_Mus3 LINE L1 -221 6417 5947 3 1331 1611 101 12 28 chr4 97805349 97805604 -57824516 + L1_Mus3 LINE L1 6388 6638 0 3 1331 6910 55 2 0 chr4 97805781 97806632 -57823488 + L1Md_F2 LINE L1 4734 5586 -297 3 1331 7761 67 3 3 chr4 97806633 97807618 -57822502 + L1Md_F2 LINE L1 5588 6572 -10 3 1331 1581 200 30 55 chr4 97807643 97808082 -57822038 + RMER10A LTR ERVL 12 439 -3 3 1331 368 224 47 12 chr4 97808085 97808171 -57821949 - RSINE1 SINE B4 -65 100 12 3 1331 807 273 26 29 chr4 97809690 97809962 -57820158 - ERVL-E-int LTR ERVL -4362 1305 1035 3 1331 183 42 0 0 chr4 97810233 97810257 -57819863 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1331 459 258 32 8 chr4 97810446 97810571 -57819549 + B1F1 SINE Alu 14 141 -8 3 1331 248 250 13 13 chr4 97811057 97811134 -57818986 + ID4 SINE ID 1 77 -6 3 1331 195 217 184 46 chr4 97812628 97812715 -57817405 + MIRb SINE MIR 107 205 -63 3 1331 188 73 91 0 chr4 97812728 97812783 -57817337 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 3 1331 252 253 0 0 chr4 97814013 97814088 -57816032 - L1MB7 LINE L1 0 6184 6110 3 1331 244 296 0 14 chr4 97814327 97814399 -57815721 + PB1D10 SINE Alu 26 96 -21 3 1331 638 96 30 0 chr4 97814438 97814573 -57815547 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 3 1331 504 260 43 61 chr4 97816035 97816199 -57813921 - RSINE1 SINE B4 0 165 5 3 1331 1240 166 114 63 chr4 97816213 97816598 -57813522 + ORR1B2 LTR MaLR 1 387 -7 3 1331 379 274 47 0 chr4 97819435 97819541 -57810579 - PB1D7 SINE Alu -9 111 1 3 1331 501 38 86 0 chr4 97820095 97820200 -57809920 + (GA)n Simple_repeat Simple_repeat 2 115 0 3 1331 1548 17 0 0 chr4 97820200 97820379 -57809741 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 3 1331 269 355 34 34 chr4 97820782 97820928 -57809192 - MER20B DNA MER1_type -604 179 34 3 1331 288 333 53 7 chr4 97821143 97821294 -57808826 + MLT1A0 LTR MaLR 19 176 -189 3 1331 668 31 70 8 chr4 97821294 97821423 -57808697 + (TC)n Simple_repeat Simple_repeat 2 138 0 3 1331 225 300 78 43 chr4 97821428 97821543 -57808577 + MLT1A0 LTR MaLR 233 351 -39 3 1331 2984 21 3 0 chr4 97821664 97822000 -57808120 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1331 625 28 0 0 chr4 97822032 97822104 -57808016 - IAPEz-int LTR ERVK -3659 2822 2751 3 1331 1526 29 0 0 chr4 97822090 97822264 -57807856 + IAPEz-int LTR ERVK 2872 3045 -3436 3 1331 1633 79 32 96 chr4 97822285 97822565 -57807555 - IAPEz-int LTR ERVK -5567 914 653 3 1331 1853 0 0 0 chr4 97822569 97822792 -57807328 - IAPLTR1a_Mm LTR ERVK -114 223 1 3 1331 4407 25 35 0 chr4 97822792 97823305 -57806815 - IAPEz-int LTR ERVK 0 6481 5951 3 1331 223 231 58 58 chr4 97823919 97823988 -57806132 + MIRc SINE MIR 81 149 -119 3 1331 240 277 39 19 chr4 97824162 97824265 -57805855 + MIRc SINE MIR 110 214 -54 3 1331 771 345 48 46 chr4 97824306 97824744 -57805376 - MT2A LTR ERVL -2 531 93 3 1331 1811 256 95 36 chr4 97825371 97825983 -57804137 - Lx8 LINE L1 0 7473 6826 3 1331 427 236 159 20 chr4 97826491 97826686 -57803434 - L1M2 LINE L1 -769 5374 5153 3 1331 383 224 88 26 chr4 97826684 97826837 -57803283 + L1M2 LINE L1 4829 5000 -1146 3 1331 296 306 47 24 chr4 97827513 97827640 -57802480 + MIRc SINE MIR 23 152 -116 3 1331 298 0 48 0 chr4 97827778 97827820 -57802300 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1331 978 234 114 65 chr4 97827993 97828777 -57801343 + L1MA9 LINE L1 4771 5608 -704 3 1331 382 223 17 63 chr4 97828778 97828930 -57801190 + RSINE1 SINE B4 3 142 -150 3 1331 605 226 121 6 chr4 97829025 97829190 -57800930 + B3 SINE B2 28 211 -5 3 1331 552 238 102 51 chr4 97829205 97829382 -57800738 + B3 SINE B2 26 211 -5 3 1331 259 229 194 28 chr4 97829392 97829464 -57800656 + RSINE1 SINE B4 82 165 0 3 1331 22 56 0 0 chr4 97829496 97829532 -57800588 + AT_rich Low_complexity Low_complexity 1 36 0 3 1331 677 312 103 37 chr4 97829571 97830007 -57800113 + L1MA9 LINE L1 5676 6140 -172 3 1331 993 212 20 10 chr4 97830234 97830434 -57799686 + B3 SINE B2 15 216 0 3 1331 326 338 29 0 chr4 97830879 97831015 -57799105 - MLT1H LTR MaLR -320 229 90 3 1331 1417 161 5 0 chr4 97831874 97832097 -57798023 + URR1B DNA MER1_type 1 224 -1 3 1331 265 283 30 10 chr4 97832312 97832412 -57797708 + MIR SINE MIR 70 171 -91 3 1331 517 207 54 0 chr4 97832437 97832548 -57797572 - B1_Mur2 SINE Alu 0 149 33 3 1331 226 304 43 11 chr4 97832550 97832643 -57797477 + MIR SINE MIR 167 262 0 3 1331 588 262 72 34 chr4 97833560 97833769 -57796351 - L1MA9 LINE L1 -314 5998 5782 3 1331 871 239 61 52 chr4 97833785 97833987 -57796133 - L1MA9 LINE L1 -609 5682 5481 3 1331 198 0 0 0 chr4 97833987 97834009 -57796111 + (TTG)n Simple_repeat Simple_repeat 2 23 0 3 1331 871 239 61 52 chr4 97834009 97834151 -57795969 - L1MA9 LINE L1 -811 5480 5335 3 1331 1252 235 131 2 chr4 97834215 97834621 -57795499 + L1M2 LINE L1 4763 5220 -923 3 1331 348 24 0 0 chr4 97835355 97835396 -57794724 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1331 246 244 22 34 chr4 97835408 97835497 -57794623 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 1331 748 305 69 18 chr4 97835514 97835791 -57794329 - B4A SINE B4 0 292 2 3 1331 393 223 77 43 chr4 97836048 97836165 -57793955 - MTEa LTR MaLR -1 378 258 3 1331 425 235 0 0 chr4 97836288 97836369 -57793751 - MTEa LTR MaLR -272 107 27 3 1331 1993 176 5 16 chr4 97836377 97836752 -57793368 + RLTR16 LTR ERVK 1 371 -134 3 1331 204 343 0 0 chr4 97837021 97837088 -57793032 + L2c LINE L2 3321 3387 0 3 1331 1116 93 25 12 chr4 97837687 97837850 -57792270 + B2_Mm1t SINE B2 1 165 -28 3 1331 458 302 120 43 chr4 97838296 97838630 -57791490 - ORR1E LTR MaLR 0 374 6 3 1331 257 256 105 0 chr4 97838638 97838724 -57791396 + L1M5 LINE L1 2110 2204 -3942 3 1331 636 311 61 32 chr4 97838856 97839168 -57790952 + Lx8 LINE L1 7144 7464 -9 3 1331 30 0 0 0 chr4 97839171 97839201 -57790919 + AT_rich Low_complexity Low_complexity 1 30 0 3 1331 207 242 0 0 chr4 97839379 97839441 -57790679 + GA-rich Low_complexity Low_complexity 1 62 0 3 1331 296 200 11 0 chr4 97839432 97839522 -57790598 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 3 1331 276 321 22 58 chr4 97839533 97839672 -57790448 - ORR1D1 LTR MaLR -240 134 1 3 1331 303 283 15 37 chr4 97839756 97839885 -57790235 - MTE2a LTR MaLR -22 386 272 3 1331 183 231 45 30 chr4 97839978 97840045 -57790075 + L2c LINE L2 3139 3206 -181 3 1331 21 57 0 0 chr4 97840304 97840339 -57789781 + AT_rich Low_complexity Low_complexity 1 35 0 3 1331 1399 230 158 29 chr4 97840361 97840720 -57789400 - Lx8 LINE L1 -6 7467 7075 3 1331 2231 200 7 55 chr4 97840720 97841159 -57788961 + MTD LTR MaLR 2 419 0 3 1331 1399 230 158 29 chr4 97841159 97841255 -57788865 - Lx8 LINE L1 -399 7074 6953 3 1331 522 308 0 0 chr4 97841737 97841880 -57788240 - Lx8 LINE L1 -567 6906 6764 3 1331 1009 285 88 42 chr4 97841983 97842598 -57787522 - L1MB7 LINE L1 -79 6105 5463 3 1331 1143 277 98 9 chr4 97842598 97842933 -57787187 + ORR1D2 LTR MaLR 1 365 -5 3 1331 595 199 43 14 chr4 97842936 97843074 -57787046 - L1MB7 LINE L1 -725 5459 5318 3 1331 252 319 103 7 chr4 97843180 97843316 -57786804 - L1MB4 LINE L1 -14 6166 6018 3 1331 326 315 152 37 chr4 97844014 97844575 -57785545 + L1M5 LINE L1 4012 4636 -1510 3 1331 7423 87 40 7 chr4 97844872 97846146 -57783974 + L1_Mus3 LINE L1 5353 6638 0 3 1331 1180 294 137 39 chr4 97846144 97846432 -57783688 + L1M4 LINE L1 4487 4799 -1347 4 1331 225 0 0 0 chr4 97846432 97846457 -57783663 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1331 1180 294 137 39 chr4 97846457 97846942 -57783178 + L1M4 LINE L1 4800 5335 -811 4 1331 21 0 0 0 chr4 97847889 97847910 -57782210 + AT_rich Low_complexity Low_complexity 1 21 0 4 1331 32 26 0 0 chr4 97849537 97849576 -57780544 + AT_rich Low_complexity Low_complexity 1 39 0 4 1331 320 341 66 15 chr4 97849616 97849753 -57780367 + MIR SINE MIR 13 156 -106 4 1331 782 312 38 76 chr4 97850780 97851388 -57778732 + L1MEf LINE L1 2117 2698 -3445 4 1331 1012 263 35 0 chr4 97851440 97851672 -57778448 - MTE2b LTR MaLR -82 297 58 4 1331 354 278 10 40 chr4 97851672 97851773 -57778347 - MTE2b LTR MaLR -281 98 1 4 1331 429 70 0 0 chr4 97851899 97851956 -57778164 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1331 316 0 0 0 chr4 97851956 97851991 -57778129 + HAL1-3A_ME LINE L1 1977 2011 -847 4 1331 2133 131 5 75 chr4 97852196 97852585 -57777535 + ORR1B2 LTR MaLR 6 367 0 4 1331 2413 301 68 10 chr4 97852637 97853501 -57776619 + Lx9 LINE L1 6326 7239 -405 4 1331 288 353 120 9 chr4 97853533 97853882 -57776238 - L1M4b LINE L1 -6398 936 549 4 1331 201 239 0 0 chr4 97853889 97853935 -57776185 + (TTAGGG)n Simple_repeat Simple_repeat 5 50 0 4 1331 247 350 128 20 chr4 97853966 97854217 -57775903 - L1M4b LINE L1 -6804 530 253 4 1331 888 252 14 28 chr4 97854301 97854517 -57775603 - B3 SINE B2 -3 213 1 4 1331 222 189 92 26 chr4 97855098 97855174 -57774946 - MIR SINE MIR -79 183 103 4 1331 368 272 0 67 chr4 97855178 97855312 -57774808 - MLT1A0 LTR MaLR 0 408 284 4 1331 232 317 24 55 chr4 97856679 97856806 -57773314 - LTR79 LTR ERVL -6 521 399 4 1331 462 337 84 20 chr4 97856997 97857200 -57772920 - MamGypLTR1a LTR Gypsy 0 784 569 4 1331 719 282 79 26 chr4 97857553 97857643 -57772477 - MLT1A0 LTR MaLR -84 281 184 4 1331 2321 147 68 0 chr4 97857643 97857997 -57772123 + ORR1C1 LTR MaLR 1 378 0 4 1331 719 282 79 26 chr4 97857997 97858135 -57771985 - MLT1A0 LTR MaLR -182 183 41 4 1331 701 209 21 62 chr4 97858290 97858484 -57771636 + L1MC5 LINE L1 7694 7879 -82 4 1331 1074 176 104 5 chr4 97858954 97859165 -57770955 - Lx9 LINE L1 -449 7195 6964 4 1331 1392 156 37 79 chr4 97859155 97859510 -57770610 + Lx9 LINE L1 7305 7644 0 4 1331 651 268 135 10 chr4 97859871 97860267 -57769853 + Lx8 LINE L1 6955 7399 -74 4 1331 715 200 55 0 chr4 97860272 97860417 -57769703 + ORR1C1 LTR MaLR 13 165 -213 4 1331 4771 164 183 60 chr4 97860435 97860961 -57769159 + ORR1C1-int LTR MaLR 12 529 -980 4 1331 540 0 0 0 chr4 97860961 97861021 -57769099 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1331 4771 164 183 60 chr4 97861021 97861160 -57768960 + ORR1C1-int LTR MaLR 530 781 -728 4 1331 2830 122 47 7 chr4 97861160 97861565 -57768555 - MTC LTR MaLR 0 421 1 4 1331 4771 164 183 60 chr4 97861565 97862096 -57768024 + ORR1C1-int LTR MaLR 782 1356 -153 4 1331 1868 163 119 20 chr4 97862120 97862464 -57767656 + ORR1C1 LTR MaLR 1 378 0 4 1331 297 283 71 55 chr4 97862821 97862948 -57767172 - Lx8 LINE L1 -297 7176 7048 4 1331 30 0 0 0 chr4 97863153 97863183 -57766937 + AT_rich Low_complexity Low_complexity 1 30 0 4 1331 26 0 0 0 chr4 97863211 97863237 -57766883 + AT_rich Low_complexity Low_complexity 1 26 0 4 1331 386 39 19 0 chr4 97863237 97863289 -57766831 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 4 1331 397 308 61 26 chr4 97863424 97863595 -57766525 + MLT1I LTR MaLR 13 232 -280 4 1331 22 56 0 0 chr4 97864129 97864165 -57765955 + AT_rich Low_complexity Low_complexity 1 36 0 4 1331 261 201 82 9 chr4 97864280 97864375 -57765745 + L1_Mur2 LINE L1 3165 3259 -2588 4 1331 935 115 0 7 chr4 97864375 97864524 -57765596 + (GAA)n Simple_repeat Simple_repeat 2 149 0 4 1331 237 274 108 32 chr4 97864524 97864586 -57765534 + L1_Mur2 LINE L1 3260 3334 -2513 4 1331 253 318 31 68 chr4 97864717 97864879 -57765241 + L1MD LINE L1 5381 5536 -823 4 1331 434 274 104 17 chr4 97864875 97865116 -57765004 + L1MA4 LINE L1 3346 3607 -2536 4 1331 323 319 0 21 chr4 97865122 97865218 -57764902 + B4 SINE B4 2 95 -197 4 1331 1473 266 72 60 chr4 97865219 97865719 -57764401 + Lx8 LINE L1 6257 6762 -711 4 1331 443 292 166 7 chr4 97865730 97866020 -57764100 - L1_Mur3 LINE L1 -1624 4256 3921 4 1331 189 121 0 0 chr4 97866036 97866069 -57764051 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1331 1057 318 84 44 chr4 97866288 97866535 -57763585 + L1MA4 LINE L1 4365 4625 -1518 4 1331 220 0 56 28 chr4 97866535 97866571 -57763549 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1331 1057 326 91 45 chr4 97866571 97867403 -57762717 + L1MA4 LINE L1 4593 5443 -437 4 1331 414 0 0 0 chr4 97867403 97867449 -57762671 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1331 583 305 66 41 chr4 97867449 97867847 -57762273 + L1MA4 LINE L1 5444 5935 -365 4 1331 1101 200 117 8 chr4 97867847 97868104 -57762016 - MERVL_2A-int LTR ERVL -2381 3380 3096 4 1331 239 298 37 53 chr4 97868144 97868332 -57761788 + L1MA4 LINE L1 5744 5928 -372 4 1331 514 60 12 12 chr4 97868367 97868451 -57761669 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1331 221 281 44 22 chr4 97868678 97868769 -57761351 - L2 LINE L2 -2226 1193 1101 4 1331 1385 257 38 23 chr4 97868930 97869277 -57760843 - ORR1E LTR MaLR -7 352 1 4 1331 3687 288 83 58 chr4 97869277 97870766 -57759354 - ORR1E-int LTR MaLR -53 1527 2 4 1331 833 270 146 25 chr4 97870771 97870816 -57759304 - ORR1E LTR MaLR -6 353 310 4 1331 198 0 0 0 chr4 97870816 97870838 -57759282 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 4 1331 833 270 146 25 chr4 97870838 97871107 -57759013 - ORR1E LTR MaLR -50 309 1 4 1331 252 342 13 0 chr4 97871704 97871780 -57758340 + ID4 SINE ID 1 77 -6 4 1331 987 212 64 5 chr4 97872227 97872431 -57757689 + B3 SINE B2 1 216 0 4 1331 936 253 105 3 chr4 97872481 97872775 -57757345 - ORR1D2 LTR MaLR -3 367 44 4 1331 255 292 33 11 chr4 97872783 97872873 -57757247 + ID_B1 SINE B4 112 203 -21 4 1331 940 77 14 0 chr4 97872877 97873020 -57757100 + (TC)n Simple_repeat Simple_repeat 1 145 0 4 1331 428 274 167 35 chr4 97873078 97873252 -57756868 - B3A SINE B2 0 198 2 4 1331 216 67 0 0 chr4 97874081 97874111 -57756009 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1331 558 0 0 0 chr4 97874445 97874507 -57755613 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1331 434 327 63 49 chr4 97874755 97875087 -57755033 - ORR1E LTR MaLR -16 363 1 4 1331 247 318 113 30 chr4 97875087 97875217 -57754903 + MER58B DNA MER1_type 197 337 -4 4 1331 228 348 104 31 chr4 97875482 97875645 -57754475 + L2c LINE L2 3062 3236 -151 4 1331 798 239 11 49 chr4 97875663 97875848 -57754272 + B3A SINE B2 4 181 -17 4 1331 217 284 189 0 chr4 97876344 97876418 -57753702 + MIRc SINE MIR 66 153 -115 4 1331 1922 208 49 11 chr4 97876567 97876932 -57753188 + MTD LTR MaLR 1 379 -40 4 1331 468 0 0 0 chr4 97876939 97876991 -57753129 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1331 3323 256 112 83 chr4 97877230 97878429 -57751691 + Lx8 LINE L1 6233 7465 -8 4 1331 570 281 40 111 chr4 97879200 97879676 -57750444 + Lx7 LINE L1 900 1341 -6387 4 1331 1405 233 82 43 chr4 97879775 97880358 -57749762 + Lx7 LINE L1 1322 1927 -3953 4 1331 2081 228 202 104 chr4 97880376 97881145 -57748975 - RMER13A LTR ERVK -16 844 1 4 1331 438 256 96 18 chr4 97881145 97881312 -57748808 + Lx7 LINE L1 1922 2101 -3779 4 1331 267 31 0 0 chr4 97881326 97881358 -57748762 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 4 1331 2769 93 8 0 chr4 97881470 97881835 -57748285 - L1_Mus4 LINE L1 0 6636 6269 4 1331 1114 199 18 106 chr4 97881835 97881993 -57748127 + Lx7 LINE L1 4482 4629 -1251 4 1331 3045 117 29 18 chr4 97881993 97882437 -57747683 + RLTR44B LTR ERVK 1 449 0 4 1331 1114 199 18 106 chr4 97882437 97882609 -57747511 + Lx7 LINE L1 4630 4783 -1097 4 1331 974 271 113 47 chr4 97882614 97883090 -57747030 - MT2B LTR ERVL 0 601 17 4 1331 3960 251 29 25 chr4 97883090 97883399 -57746721 + Lx7 LINE L1 4809 5111 -769 4 1331 2534 139 153 77 chr4 97883399 97883637 -57746483 - RMER4B LTR ERVK 0 585 321 4 1331 450 0 0 0 chr4 97883637 97883687 -57746433 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1331 2534 139 153 77 chr4 97883687 97883992 -57746128 - RMER4B LTR ERVK -265 320 2 4 1331 5014 263 70 33 chr4 97883992 97886152 -57743968 + Lx7 LINE L1 5112 7371 -325 4 1331 26 0 0 0 chr4 97886276 97886302 -57743818 + AT_rich Low_complexity Low_complexity 1 26 0 4 1331 347 297 13 20 chr4 97886398 97886549 -57743571 - HAL1-2a_MD LINE L1 -519 2505 2356 4 1331 762 198 0 0 chr4 97886571 97886748 -57743372 + (CTG)n Simple_repeat Simple_repeat 3 179 0 4 1331 1417 220 96 12 chr4 97886874 97887219 -57742901 - ORR1D1 LTR MaLR 0 374 1 4 1331 315 0 0 0 chr4 97887844 97887879 -57742241 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 1331 892 172 0 0 chr4 97888030 97888164 -57741956 + B1_Mus1 SINE Alu 2 135 -13 4 1331 396 0 0 0 chr4 97888165 97888209 -57741911 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1331 250 340 0 76 chr4 97888975 97889080 -57741040 - MIRb SINE MIR -53 215 119 4 1331 237 273 25 25 chr4 97889091 97889170 -57740950 + MTEa LTR MaLR 8 86 -284 4 1331 419 307 73 6 chr4 97889276 97889440 -57740680 + MTEa LTR MaLR 205 379 0 4 1331 549 231 1 9 chr4 97890837 97890958 -57739162 + PB1D7 SINE Alu 14 128 -22 4 1331 345 302 56 0 chr4 97891004 97891166 -57738954 + MER33 DNA MER1_type 130 300 -24 4 1331 234 311 58 0 chr4 97891527 97891630 -57738490 + L3 LINE CR1 3272 3380 -1109 4 1331 3394 77 4 4 chr4 97891946 97892400 -57737720 - L1_Mus4 LINE L1 -2 6634 6181 4 1331 353 345 41 27 chr4 97893060 97893206 -57736914 - MER63A DNA AcHobo -50 160 13 4 1331 1583 276 87 17 chr4 97893331 97893679 -57736441 + Lx8 LINE L1 6850 7230 -243 4 1331 252 0 0 0 chr4 97893679 97893707 -57736413 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1331 1583 276 87 17 chr4 97893707 97893934 -57736186 + Lx8 LINE L1 7231 7465 -8 4 1331 402 21 0 0 chr4 97893934 97893981 -57736139 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 4 1331 263 263 0 14 chr4 97894104 97894195 -57735925 + ID4 SINE ID 1 90 -62 4 1331 250 304 0 0 chr4 97894428 97894530 -57735590 + (TATG)n Simple_repeat Simple_repeat 2 103 0 4 1331 314 337 59 21 chr4 97894601 97894845 -57735275 - L1_Mur3 LINE L1 -62 5815 5564 4 1331 722 277 14 31 chr4 97895094 97895383 -57734737 - Lx8 LINE L1 -1711 5933 5659 4 1331 1006 262 4 58 chr4 97895357 97895740 -57734380 + Lx8 LINE L1 5312 5674 -206 4 1331 568 225 16 0 chr4 97895800 97895929 -57734191 + B1_Mur1 SINE Alu 18 148 -1 4 1331 284 0 28 0 chr4 97895932 97895968 -57734152 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1331 1136 292 82 42 chr4 97896130 97896887 -57733233 - Lx8 LINE L1 -429 5451 4665 4 1331 2362 318 52 74 chr4 97897119 97898270 -57731850 - Lx8 LINE L1 -253 7220 6095 4 1331 464 194 86 31 chr4 97898417 97898545 -57731575 - L1M2 LINE L1 -1430 4713 4579 4 1331 1125 298 37 37 chr4 97899037 97899602 -57730518 - L1M2 LINE L1 -1592 4551 3987 4 1331 492 93 0 0 chr4 97899605 97899680 -57730440 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1331 632 250 18 43 chr4 97899823 97899924 -57730196 - Lx6 LINE L1 -49 7411 7316 4 1331 5153 109 15 1 chr4 97899924 97900661 -57729459 + Lx2 LINE L1 6245 6991 -6 4 1331 507 33 0 0 chr4 97900661 97900722 -57729398 + (GAAAA)n Simple_repeat Simple_repeat 3 63 0 5 1331 632 250 18 43 chr4 97900722 97900782 -57729338 - Lx6 LINE L1 -145 7315 7254 4 1331 194 81 27 0 chr4 97900791 97900828 -57729292 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 1331 493 28 28 0 chr4 97900829 97900900 -57729220 + (GTTTG)n Simple_repeat Simple_repeat 1 73 0 5 1331 810 240 22 27 chr4 97902077 97902300 -57727820 - L1M2 LINE L1 -2156 3987 3766 4 1331 208 294 12 12 chr4 97902793 97902879 -57727241 + MIR SINE MIR 167 252 -10 5 1331 300 261 14 0 chr4 97903197 97903266 -57726854 - Tigger7 DNA MER2_type -6 2485 2416 5 1331 743 228 58 13 chr4 97903270 97903469 -57726651 + ORR1E LTR MaLR 1 210 -174 5 1331 441 0 0 0 chr4 97903470 97903519 -57726601 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1331 236 102 0 20 chr4 97903527 97903577 -57726543 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1331 312 179 0 0 chr4 97903607 97903685 -57726435 + C-rich Low_complexity Low_complexity 1 78 0 5 1331 303 270 59 12 chr4 97903690 97903840 -57726280 + ORR1E LTR MaLR 214 377 -2 5 1331 405 0 0 0 chr4 97903858 97903903 -57726217 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1331 542 311 65 54 chr4 97903904 97904183 -57725937 - Tigger7 DNA MER2_type -96 2395 2114 5 1331 209 152 0 42 chr4 97906464 97906512 -57723608 + GA-rich Low_complexity Low_complexity 2 47 0 5 1331 1335 165 9 0 chr4 97906742 97906966 -57723154 + URR1A DNA MER1_type 1 226 0 5 1331 458 281 82 18 chr4 97907080 97907250 -57722870 + B4A SINE B4 106 286 -6 5 1331 1357 310 60 11 chr4 97907676 97908504 -57721616 + Lx7 LINE L1 5036 5909 -1787 5 1331 330 67 0 0 chr4 97908626 97908671 -57721449 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 1331 1092 120 0 0 chr4 97909174 97909386 -57720734 + (TCC)n Simple_repeat Simple_repeat 1 212 0 5 1331 1200 111 0 0 chr4 97909401 97909581 -57720539 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1331 271 139 27 14 chr4 97910514 97910587 -57719533 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 5 1331 311 300 0 0 chr4 97910587 97910677 -57719443 + C-rich Low_complexity Low_complexity 1 90 0 5 1332 513 0 0 0 chr4 97911140 97911197 -57718923 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1332 491 274 104 8 chr4 97911862 97912112 -57718008 - MLT1C LTR MaLR -135 332 59 5 1332 1369 91 16 5 chr4 97912223 97912410 -57717710 - B2_Mm2 SINE B2 -6 189 1 5 1332 935 182 39 0 chr4 97912792 97912973 -57717147 - B3 SINE B2 -14 202 15 5 1332 332 313 87 53 chr4 97913064 97913270 -57716850 + L1MA9 LINE L1 5950 6162 -150 5 1332 484 273 26 20 chr4 97913595 97913748 -57716372 + RSINE1 SINE B4 4 157 -8 5 1332 1151 74 11 11 chr4 97913750 97913928 -57716192 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1332 1284 84 0 0 chr4 97913949 97914128 -57715992 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1332 1099 299 92 29 chr4 97914595 97915448 -57714672 + L1M2 LINE L1 3455 4407 -1739 5 1332 1075 76 0 0 chr4 97915454 97915598 -57714522 + B2_Mm2 SINE B2 1 144 -51 5 1332 1239 54 0 0 chr4 97915598 97915745 -57714375 + B1_Mus2 SINE Alu 1 147 0 5 1332 450 0 0 0 chr4 97915784 97915834 -57714286 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 5 1332 277 252 265 0 chr4 97915847 97915994 -57714126 + L1_Mm LINE L1 4397 4582 -1301 5 1332 423 259 119 36 chr4 97915999 97916167 -57713953 + MTD LTR MaLR 1 182 -237 5 1332 1003 256 170 40 chr4 97916193 97916794 -57713326 + L1M2 LINE L1 4624 5303 -840 5 1332 411 21 0 0 chr4 97916794 97916842 -57713278 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1332 1003 192 90 23 chr4 97916842 97916966 -57713154 + L1M2 LINE L1 5304 5440 -731 5 1332 285 179 0 0 chr4 97916966 97917022 -57713098 + B3 SINE B2 1 56 -160 5 1332 340 266 40 55 chr4 97917072 97917271 -57712849 + L1M4c LINE L1 2112 2307 -4077 5 1332 387 105 0 0 chr4 97917282 97917339 -57712781 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1332 458 244 47 0 chr4 97917357 97917484 -57712636 + L1M4c LINE L1 2294 2426 -3958 5 1332 377 244 165 0 chr4 97917496 97917611 -57712509 + B1F1 SINE Alu 10 143 -6 5 1332 340 263 26 0 chr4 97917673 97917749 -57712371 + ID4_ SINE ID 2 79 -4 5 1332 390 331 218 8 chr4 97917779 97918160 -57711960 + L1M4c LINE L1 2540 3000 -3382 5 1332 254 359 0 0 chr4 97918179 97918243 -57711877 + Lx8 LINE L1 7193 7256 -217 5 1332 2054 265 120 58 chr4 97918586 97918665 -57711455 + Lx5 LINE L1 6665 6750 -710 5 1332 315 0 0 0 chr4 97918665 97918700 -57711420 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 5 1332 2443 253 30 17 chr4 97918700 97919329 -57710791 + Lx5 LINE L1 6455 7416 -44 5 1332 471 78 0 0 chr4 97919333 97919397 -57710723 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 5 1332 285 295 155 35 chr4 97919397 97919597 -57710523 + Lx8 LINE L1 7241 7464 -9 5 1332 555 269 70 15 chr4 97919663 97919863 -57710257 + B3 SINE B2 1 211 -5 5 1332 3037 106 11 2 chr4 97919865 97920351 -57709769 - RMER16 LTR ERVK 0 533 1 5 1332 587 308 5 62 chr4 97920455 97920663 -57709457 + B4 SINE B4 5 200 -92 5 1332 240 35 0 0 chr4 97920798 97920827 -57709293 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 5 1332 201 159 0 0 chr4 97920836 97920880 -57709240 + (TAGG)n Simple_repeat Simple_repeat 3 46 0 5 1332 231 61 0 0 chr4 97921213 97921246 -57708874 + (CCA)n Simple_repeat Simple_repeat 1 33 0 5 1332 371 227 70 35 chr4 97922417 97922531 -57707589 - L2a LINE L2 0 3426 3309 5 1332 417 284 78 0 chr4 97923587 97923689 -57706431 - B3A SINE B2 -88 110 1 5 1332 300 49 65 16 chr4 97924002 97924064 -57706056 + (GTTTG)n Simple_repeat Simple_repeat 2 66 0 5 1332 229 155 83 33 chr4 97924256 97924316 -57705804 + ID SINE ID 12 74 -150 5 1332 291 266 32 0 chr4 97925651 97925745 -57704375 + MIRb SINE MIR 164 260 -8 5 1332 2422 200 69 131 chr4 97925840 97925921 -57704199 - Lx9 LINE L1 0 7644 7552 5 1332 201 39 0 0 chr4 97925921 97925947 -57704173 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1332 2422 200 69 131 chr4 97925947 97926704 -57703416 - Lx9 LINE L1 -93 7551 6859 5 1332 585 206 103 0 chr4 97926695 97926850 -57703270 + Lx9 LINE L1 5645 5815 -32 5 1332 2260 194 14 12 chr4 97927062 97927485 -57702635 + Lx9 LINE L1 6449 6872 -772 5 1332 990 255 5 0 chr4 97927575 97927787 -57702333 + B3 SINE B2 1 213 -3 5 1332 389 284 7 63 chr4 97928036 97928179 -57701941 + RSINE1 SINE B4 14 148 -17 5 1332 22 35 0 0 chr4 97928216 97928245 -57701875 + AT_rich Low_complexity Low_complexity 1 29 0 5 1332 930 247 54 68 chr4 97929021 97929390 -57700730 + MLT1A0 LTR MaLR 2 365 0 5 1332 1349 49 52 47 chr4 97929673 97929866 -57700254 + B2_Mm2 SINE B2 1 194 -1 5 1332 212 191 0 0 chr4 97930567 97930609 -57699511 - L2 LINE L2 -676 2743 2702 5 1332 336 331 69 0 chr4 97930663 97930823 -57699297 + LTR16A LTR ERVL 5 175 -276 5 1332 24 67 0 0 chr4 97931686 97931731 -57698389 + AT_rich Low_complexity Low_complexity 1 45 0 5 1332 579 258 81 17 chr4 97931872 97932031 -57698089 + B3A SINE B2 3 170 -25 5 1332 360 0 0 0 chr4 97932031 97932071 -57698049 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1332 286 277 101 73 chr4 97932071 97932090 -57698030 + B2_Mm2 SINE B2 171 186 -9 5 1332 267 171 6 74 chr4 97932180 97932265 -57697855 + RSINE1 SINE B4 5 79 -213 5 1332 246 55 71 18 chr4 97932274 97932330 -57697790 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1332 280 59 39 0 chr4 97932452 97932503 -57697617 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 5 1332 253 286 0 14 chr4 97932694 97932765 -57697355 + ID4 SINE ID 14 83 0 5 1332 228 35 0 0 chr4 97933581 97933610 -57696510 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1332 687 272 77 6 chr4 97933617 97933787 -57696333 - B3A SINE B2 -16 182 1 5 1332 201 200 20 0 chr4 97934297 97934347 -57695773 + A-rich Low_complexity Low_complexity 3 53 0 5 1332 207 0 0 0 chr4 97934677 97934700 -57695420 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1332 564 15 0 0 chr4 97934989 97935054 -57695066 + (TTGG)n Simple_repeat Simple_repeat 3 67 0 5 1332 1370 239 41 21 chr4 97935581 97935975 -57694145 + L1MA8 LINE L1 5501 5936 -355 5 1332 494 258 50 0 chr4 97936237 97936357 -57693763 + RSINE1 SINE B4 3 128 -37 5 1332 423 0 0 0 chr4 97936357 97936404 -57693716 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1332 4124 276 34 44 chr4 97936460 97937625 -57692495 + Lx8 LINE L1 6223 7376 -97 5 1332 536 211 0 107 chr4 97937649 97937771 -57692349 + B1_Mur3 SINE Alu 1 109 -40 5 1332 243 0 0 0 chr4 97937773 97937800 -57692320 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1332 226 300 19 65 chr4 97938341 97938448 -57691672 + PB1D7 SINE Alu 17 118 -2 5 1332 2304 210 33 4 chr4 97938506 97938960 -57691160 - Lx9 LINE L1 -598 7046 6580 5 1332 341 246 79 55 chr4 97938968 97939222 -57690898 - Lx9 LINE L1 -1417 6227 5968 5 1332 23 33 0 0 chr4 97939706 97939736 -57690384 + AT_rich Low_complexity Low_complexity 1 30 0 5 1332 12448 33 71 7 chr4 97939760 97941285 -57688835 - IAPEz-int LTR ERVK -4852 1629 8 5 1332 3078 17 43 0 chr4 97941285 97941637 -57688483 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1332 1358 194 77 43 chr4 97941671 97942021 -57688099 - RMER19B LTR ERVK -188 714 353 5 1332 204 247 0 0 chr4 97942026 97942111 -57688009 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1332 592 115 19 28 chr4 97942416 97942523 -57687597 + HY1 scRNA scRNA 2 107 -5 5 1332 1014 163 10 19 chr4 97942519 97942725 -57687395 + RLTR23 LTR ERV1 227 430 0 5 1332 255 254 0 0 chr4 97943374 97943433 -57686687 + ID4_ SINE ID 16 74 -9 5 1332 1179 278 108 59 chr4 97944536 97944720 -57685400 + Lx8 LINE L1 6100 6282 -1191 5 1332 2220 169 35 18 chr4 97944720 97945118 -57685002 - MTB_Mm LTR MaLR 0 407 3 5 1332 1179 278 108 59 chr4 97945118 97945544 -57684576 + Lx8 LINE L1 6283 6740 -733 5 1332 436 232 0 45 chr4 97945589 97945702 -57684418 - B1_Mur1 SINE Alu 0 149 16 5 1332 1667 304 19 26 chr4 97945736 97946266 -57683854 + Lx8 LINE L1 6807 7332 -141 5 1332 1098 134 103 5 chr4 97946313 97946397 -57683723 - RLTR20D LTR ERVK 0 568 464 5 1332 351 0 0 0 chr4 97946397 97946436 -57683684 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1332 1590 136 132 4 chr4 97946436 97946790 -57683330 - RLTR20D LTR ERVK -105 463 13 5 1332 747 87 0 0 chr4 97946791 97946895 -57683225 + (CA)n Simple_repeat Simple_repeat 1 104 0 5 1332 304 262 114 19 chr4 97947023 97947128 -57682992 - MTD LTR MaLR -297 122 8 5 1332 2005 250 247 41 chr4 97947151 97947916 -57682204 - MTD-int LTR MaLR -50 1208 243 5 1332 2885 78 0 0 chr4 97947916 97948289 -57681831 - L1_Mus2 LINE L1 0 6566 6194 5 1332 2005 250 247 41 chr4 97948289 97948523 -57681597 - MTD-int LTR MaLR -1016 242 4 5 1332 1174 227 89 0 chr4 97948524 97948793 -57681327 - MTD LTR MaLR 0 419 127 5 1332 229 369 23 0 chr4 97949242 97949372 -57680748 + LTR33B LTR ERVL 371 503 0 5 1332 229 232 18 0 chr4 97949490 97949546 -57680574 + Lx8 LINE L1 7060 7116 -357 5 1332 435 272 29 14 chr4 97949760 97949898 -57680222 + RMER15 LTR ERVL 422 561 -14 6 1332 489 229 157 81 chr4 97950200 97950385 -57679735 - RMER30 DNA MER1_type -2 200 2 6 1332 928 83 8 0 chr4 97951203 97951336 -57678784 + B1_Mus1 SINE Alu 10 143 -5 6 1332 189 0 0 0 chr4 97952723 97952744 -57677376 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1332 4634 214 60 15 chr4 97953120 97954093 -57676027 + RMER1B Other Other 45 1060 -6 6 1332 29846 68 62 4 chr4 97954425 97959340 -57670780 + L1Md_F2 LINE L1 288 5589 -297 6 1332 8086 52 4 2 chr4 97959340 97960334 -57669786 + L1Md_F2 LINE L1 5590 6585 0 6 1332 22 0 0 0 chr4 97960971 97960993 -57669127 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 699 291 82 62 chr4 97961314 97961555 -57668565 - MTD LTR MaLR -18 401 149 6 1332 747 62 0 0 chr4 97961555 97961652 -57668468 + (TTC)n Simple_repeat Simple_repeat 2 98 0 6 1332 1157 75 0 13 chr4 97961655 97961804 -57668316 - B1_Mm SINE Alu 0 147 1 6 1332 699 291 82 62 chr4 97961804 97961899 -57668221 - MTD LTR MaLR -271 148 54 6 1332 979 262 151 67 chr4 97961911 97962936 -57667184 - MTD-int LTR MaLR -16 1242 1 6 1332 561 289 198 12 chr4 97962937 97963270 -57666850 - MTD LTR MaLR -7 412 18 6 1332 683 116 8 0 chr4 97963390 97963511 -57666609 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 1332 1830 193 62 3 chr4 97963538 97963891 -57666229 + ORR1D1 LTR MaLR 1 374 0 6 1332 669 168 25 0 chr4 97963900 97964019 -57666101 + B1_Mur1 SINE Alu 21 142 -7 6 1332 237 254 48 0 chr4 97964364 97964427 -57665693 + LTR50 LTR ERVL 730 795 0 6 1332 1637 143 24 121 chr4 97964477 97964536 -57665584 - ORR1B1 LTR MaLR -2 392 337 6 1332 769 115 172 52 chr4 97964536 97964710 -57665410 - B2_Mm2 SINE B2 0 195 1 6 1332 1637 143 24 121 chr4 97964710 97965031 -57665089 - ORR1B1 LTR MaLR -58 336 49 6 1332 254 325 52 17 chr4 97965086 97965202 -57664918 + ERVL-E-int LTR ERVL 84 203 -5464 6 1332 380 297 20 33 chr4 97965492 97965645 -57664475 - MER3 DNA MER1_type -6 203 53 6 1332 231 279 16 0 chr4 97965987 97966048 -57664072 + B4A SINE B4 84 145 -147 6 1332 316 262 36 64 chr4 97965995 97966105 -57664015 + PB1D10 SINE Alu 11 117 0 6 1332 493 161 10 31 chr4 97966697 97966793 -57663327 - Lx9 LINE L1 -589 7055 6962 6 1332 1100 179 189 8 chr4 97966793 97966959 -57663161 + Lx9 LINE L1 7028 7235 -409 6 1332 189 0 0 0 chr4 97966959 97966980 -57663140 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1332 324 0 0 0 chr4 97966980 97967015 -57663105 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1332 1100 179 189 8 chr4 97967015 97967090 -57663030 + Lx9 LINE L1 7236 7313 -331 6 1332 446 272 88 18 chr4 97967299 97967505 -57662615 - RMER20B LTR ERVK -109 407 189 6 1332 1229 174 125 0 chr4 97968022 97968309 -57661811 + Lx9 LINE L1 7317 7639 -5 6 1332 618 14 0 0 chr4 97968625 97968696 -57661424 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1332 585 28 0 0 chr4 97968696 97968766 -57661354 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1332 486 0 0 0 chr4 97968798 97968852 -57661268 + (CTTG)n Simple_repeat Simple_repeat 1 54 0 6 1332 565 220 8 0 chr4 97968862 97968980 -57661140 - B1_Mur1 SINE Alu -29 120 2 6 1332 1284 201 32 175 chr4 97969006 97969441 -57660679 + ORR1D1 LTR MaLR 1 373 -1 6 1332 230 261 176 95 chr4 97969883 97969990 -57660130 + L1_Rod LINE L1 1874 1977 -3870 6 1332 910 209 47 33 chr4 97969990 97970185 -57659935 + B3 SINE B2 1 203 -13 6 1332 694 75 19 0 chr4 97970185 97970291 -57659829 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 6 1332 910 209 47 33 chr4 97970291 97970308 -57659812 + B3 SINE B2 204 216 0 6 1332 230 261 176 95 chr4 97970308 97970484 -57659636 + L1_Rod LINE L1 1978 2180 -3667 6 1332 359 218 187 88 chr4 97970518 97970689 -57659431 + Lx5 LINE L1 6831 7018 -32 6 1332 1051 97 13 0 chr4 97970693 97970848 -57659272 + B2_Mm1t SINE B2 23 179 -14 6 1332 961 57 14 14 chr4 97970876 97971019 -57659101 + B2_Mm2 SINE B2 47 189 -6 6 1332 342 0 0 0 chr4 97971029 97971067 -57659053 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1332 1284 286 108 32 chr4 97971123 97971844 -57658276 + L1_Rod LINE L1 2249 3024 -2823 6 1332 450 283 132 16 chr4 97971847 97972037 -57658083 + ID_B1 SINE B4 5 216 -8 6 1332 460 250 77 51 chr4 97972080 97972236 -57657884 + RSINE1 SINE B4 6 165 0 6 1332 23 43 0 21 chr4 97972264 97972289 -57657831 + AT_rich Low_complexity Low_complexity 1 25 0 6 1332 610 241 43 0 chr4 97972289 97972430 -57657690 - B1_Mur2 SINE Alu 0 149 3 6 1332 23 43 0 21 chr4 97972430 97972452 -57657668 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 490 272 60 72 chr4 97972452 97972776 -57657344 + L1M2 LINE L1 3032 3362 -2781 6 1332 965 149 62 11 chr4 97972776 97972953 -57657167 + B2_Mm2 SINE B2 1 186 -9 6 1332 490 272 60 72 chr4 97972953 97973028 -57657092 + L1M2 LINE L1 3363 3426 -2717 6 1332 691 160 50 62 chr4 97973053 97973213 -57656907 + ORR1C1-int LTR MaLR 1114 1271 -238 6 1332 978 39 0 8 chr4 97973197 97973328 -57656792 + B1_Mus2 SINE Alu 18 147 0 6 1332 2465 154 7 11 chr4 97973328 97973919 -57656201 - MERVL_2A-int LTR ERVL -836 4925 4283 6 1332 459 0 0 0 chr4 97974293 97974344 -57655776 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1332 839 188 0 0 chr4 97974982 97975131 -57654989 - B3 SINE B2 -6 210 62 6 1332 7122 119 12 26 chr4 97975169 97976694 -57653426 - Lx LINE L1 0 6654 5149 6 1332 7415 68 34 14 chr4 97976687 97978395 -57651725 - L1VL4 LINE L1 -1608 1951 210 6 1332 238 97 0 0 chr4 97978393 97978424 -57651696 - L1VL4 LINE L1 -3323 237 207 6 1332 278 246 16 0 chr4 97978427 97978488 -57651632 - B3A SINE B2 -123 75 14 6 1332 809 248 85 63 chr4 97978499 97978605 -57651515 - Lx8 LINE L1 -2 7471 7352 6 1332 351 65 0 0 chr4 97978605 97978651 -57651469 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 6 1332 809 248 85 63 chr4 97978651 97978683 -57651437 - Lx8 LINE L1 -122 7351 7316 6 1332 982 142 168 5 chr4 97978683 97978874 -57651246 - URR1B DNA MER1_type -3 222 1 6 1332 809 248 85 63 chr4 97978874 97978948 -57651172 - Lx8 LINE L1 -158 7315 7248 6 1332 2408 95 0 58 chr4 97978948 97979293 -57650827 + ORR1A2 LTR MaLR 1 325 -2 6 1332 809 248 85 63 chr4 97979293 97979397 -57650723 - Lx8 LINE L1 -226 7247 7147 6 1332 1306 295 31 5 chr4 97979439 97979824 -57650296 - Lx8 LINE L1 -455 7018 6624 6 1332 254 222 16 0 chr4 97979825 97979883 -57650237 + ORR1C1 LTR MaLR 5 63 -315 6 1332 2447 105 16 5 chr4 97979883 97980265 -57649855 + ORR1B1 LTR MaLR 1 386 -8 6 1332 1487 276 8 8 chr4 97980279 97980644 -57649476 - Lx8 LINE L1 -861 6612 6248 6 1332 195 129 0 0 chr4 97981137 97981168 -57648952 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 6 1332 1296 79 0 0 chr4 97981178 97981356 -57648764 + (CCA)n Simple_repeat Simple_repeat 3 180 0 6 1332 301 176 20 0 chr4 97981358 97981409 -57648711 - ID4 SINE ID 0 83 32 6 1332 232 159 0 55 chr4 97981638 97981711 -57648409 + (CAGAGA)n Simple_repeat Simple_repeat 3 71 0 6 1332 357 82 0 0 chr4 97981713 97981762 -57648358 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 6 1332 530 295 90 5 chr4 97981883 97982094 -57648026 + MER58B DNA MER1_type 111 339 -2 6 1332 252 0 0 0 chr4 97982230 97982258 -57647862 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1332 946 224 19 19 chr4 97982430 97982644 -57647476 - B3 SINE B2 -1 215 2 6 1332 337 321 0 0 chr4 97983104 97983185 -57646935 + B1F1 SINE Alu 1 81 -68 6 1332 302 0 26 0 chr4 97983622 97983660 -57646460 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1332 391 186 162 29 chr4 97984365 97984470 -57645650 + ID_B1 SINE B4 106 224 0 6 1332 426 276 124 25 chr4 97984734 97985048 -57645072 + MTEa LTR MaLR 2 379 0 6 1332 274 230 14 36 chr4 97987175 97987315 -57642805 + GA-rich Low_complexity Low_complexity 1 137 0 6 1332 225 0 0 0 chr4 97987317 97987342 -57642778 + (CACAG)n Simple_repeat Simple_repeat 3 27 0 6 1332 513 47 0 0 chr4 97987990 97988054 -57642066 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1332 257 347 42 60 chr4 97990367 97990582 -57639538 - MIRb SINE MIR -17 251 41 6 1332 339 346 18 41 chr4 97990796 97991016 -57639104 + MER20 DNA MER1_type 4 218 -1 6 1332 1838 256 24 23 chr4 97991035 97991547 -57638573 + Lx6 LINE L1 6572 7440 -20 6 1332 662 35 0 12 chr4 97991549 97991635 -57638485 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 6 1332 1576 22 22 0 chr4 97992194 97992375 -57637745 - B2_Mm1a SINE B2 -7 186 2 6 1332 308 175 0 0 chr4 97992650 97992707 -57637413 + MTC-int LTR MaLR 1202 1258 0 6 1332 2692 132 19 7 chr4 97992711 97993123 -57636997 + MTC LTR MaLR 5 421 0 6 1332 5192 183 33 17 chr4 97993123 97994133 -57635987 + MTC-int LTR MaLR 1 1026 -232 6 1332 2230 181 24 14 chr4 97994135 97994551 -57635569 + MTC LTR MaLR 1 420 -1 6 1332 413 218 54 11 chr4 97995369 97995484 -57634636 + B1F2 SINE Alu 1 125 -2 6 1332 252 86 0 0 chr4 97995721 97995756 -57634364 + (TATG)n Simple_repeat Simple_repeat 4 38 0 6 1332 632 231 8 23 chr4 97995760 97995893 -57634227 - RSINE1 SINE B4 -33 132 2 6 1332 182 311 66 0 chr4 97996701 97996762 -57633358 - L2c LINE L2 -4 3371 3307 6 1332 292 270 56 0 chr4 97996895 97996984 -57633136 - MER5A1 DNA MER1_type -57 109 16 6 1332 235 270 0 16 chr4 97997240 97997304 -57632816 - L2c LINE L2 -304 3083 3021 6 1332 214 216 20 0 chr4 97997434 97997485 -57632635 + L2b LINE L2 3324 3375 0 6 1332 906 196 16 5 chr4 97998536 97998721 -57631399 - B3 SINE B2 0 216 30 6 1332 1230 25 25 6 chr4 97998842 97999002 -57631118 - L1Md_F3 LINE L1 -2 6582 6420 6 1332 240 158 0 0 chr4 97999003 97999041 -57631079 - B3 SINE B2 -177 39 2 6 1332 351 60 0 0 chr4 97999438 97999488 -57630632 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1332 614 271 0 7 chr4 97999855 98000000 -57630120 + B4 SINE B4 5 148 -144 6 1332 472 193 74 25 chr4 98000006 98000128 -57629992 + B4 SINE B4 159 286 -6 1 1332 749 267 77 0 chr4 98000547 98000742 -57629378 - B3 SINE B2 -6 210 1 2 1332 219 295 75 15 chr4 98001203 98001337 -57628783 - L2a LINE L2 -370 3056 2915 3 1332 271 387 0 0 chr4 98001481 98001654 -57628466 + (GACTG)n Simple_repeat Simple_repeat 4 176 0 4 1332 243 0 0 0 chr4 98001736 98001763 -57628357 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1332 307 307 121 7 chr4 98001800 98001999 -57628121 + MLT1E1A LTR MaLR 339 680 0 6 1332 510 17 0 0 chr4 98002291 98002350 -57627770 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 7 1332 297 0 0 0 chr4 98002350 98002382 -57627738 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 8 1332 551 128 9 0 chr4 98002384 98002493 -57627627 + (GAGAA)n Simple_repeat Simple_repeat 1 110 0 9 1332 234 0 0 0 chr4 98002781 98002807 -57627313 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1332 440 264 96 44 chr4 98004345 98004480 -57625640 + RSINE1 SINE B4 2 143 -22 1 1332 366 23 0 0 chr4 98004482 98004525 -57625595 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1332 449 322 9 0 chr4 98004538 98004653 -57625467 + RSINE1 SINE B4 3 118 -47 1 1332 396 0 0 0 chr4 98004653 98004697 -57625423 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 1 1332 411 73 0 0 chr4 98004814 98004869 -57625251 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1332 366 269 42 15 chr4 98004898 98005014 -57625106 - B3A SINE B2 -69 126 2 1 1332 495 262 134 7 chr4 98005059 98005201 -57624919 - RSINE1 SINE B4 -2 163 4 1 1332 351 0 0 0 chr4 98005345 98005384 -57624736 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1332 202 337 36 0 chr4 98006303 98006386 -57623734 + L2b LINE L2 3290 3375 0 1 1332 225 300 48 39 chr4 98006759 98006863 -57623257 + LTR33C LTR ERVL 170 274 -355 2 1332 319 307 159 4 chr4 98006870 98007096 -57623024 + MLT2E LTR ERVL 343 603 -25 2 1332 357 198 25 117 chr4 98007712 98007832 -57622288 + MT2B LTR ERVL 156 264 -337 2 1332 802 128 37 15 chr4 98007733 98007868 -57622252 + B1_Mur4 SINE Alu 12 149 -1 2 1332 21 0 0 0 chr4 98007877 98007898 -57622222 + GC_rich Low_complexity Low_complexity 1 21 0 2 1332 924 205 40 5 chr4 98008454 98008655 -57621465 - B3 SINE B2 -7 209 2 2 1332 256 319 0 0 chr4 98008670 98008742 -57621378 - PB1D10 SINE Alu -5 112 41 2 1332 327 191 0 110 chr4 98009173 98009273 -57620847 + MT2B2 LTR ERVL 169 257 -327 2 1332 799 157 0 22 chr4 98009184 98009321 -57620799 + B1_Mus2 SINE Alu 14 147 0 2 1332 25 0 0 0 chr4 98009321 98009346 -57620774 + AT_rich Low_complexity Low_complexity 1 25 0 2 1332 256 246 163 38 chr4 98009473 98009604 -57620516 - RSINE1 SINE B4 -19 273 87 3 1332 1803 207 32 45 chr4 98009623 98010013 -57620107 - MTD LTR MaLR -20 399 20 3 1332 180 0 0 0 chr4 98010013 98010033 -57620087 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1332 1803 207 32 45 chr4 98010033 98010046 -57620074 - MTD LTR MaLR -400 19 1 3 1332 340 335 24 61 chr4 98010046 98010208 -57619912 - B4A SINE B4 -134 158 3 3 1332 511 174 28 75 chr4 98010354 98010384 -57619736 + Lx7 LINE L1 6443 6471 -1225 3 1332 2026 154 75 11 chr4 98010384 98010744 -57619376 + ORR1C2 LTR MaLR 2 384 0 3 1332 511 174 28 75 chr4 98010744 98010819 -57619301 + Lx7 LINE L1 6472 6543 -1153 3 1332 548 107 31 5 chr4 98010819 98010920 -57619200 + ORR1A3 LTR MaLR 252 419 0 3 1332 4159 50 0 0 chr4 98011078 98011578 -57618542 - L1Md_F3 LINE L1 -14 6570 6071 3 1332 971 188 5 78 chr4 98011578 98011797 -57618323 - URR1A DNA MER1_type -23 203 1 3 1332 188 361 67 34 chr4 98011810 98011959 -57618161 - MIRb SINE MIR -43 225 72 3 1332 308 336 23 15 chr4 98012410 98012540 -57617580 - MIRb SINE MIR -57 211 81 4 1332 3028 255 45 25 chr4 98013015 98013104 -57617016 - Lx9 LINE L1 -34 7610 7511 4 1332 423 0 0 0 chr4 98013104 98013151 -57616969 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1332 3028 255 45 25 chr4 98013151 98013968 -57616152 - Lx9 LINE L1 -134 7510 6686 4 1332 196 333 128 21 chr4 98014066 98014253 -57615867 - L2a LINE L2 -4 3422 3216 4 1332 211 338 24 24 chr4 98015594 98015676 -57614444 - MIRb SINE MIR -186 82 1 4 1332 2870 9 3 0 chr4 98016025 98016346 -57613774 + RLTRETN_Mm LTR ERVK 1 322 0 4 1332 378 275 20 60 chr4 98016560 98016711 -57613409 - Lx6 LINE L1 -26 7434 7290 4 1332 340 293 26 0 chr4 98016994 98017110 -57613010 - B1F1 SINE Alu -18 131 13 4 1332 826 214 171 56 chr4 98017269 98017590 -57612530 + RMER19C LTR ERVK 138 495 -116 4 1332 482 273 35 41 chr4 98017956 98018101 -57612019 + B1_Mur1 SINE Alu 1 144 -5 4 1332 425 284 128 50 chr4 98018124 98018265 -57611855 + RSINE1 SINE B4 14 165 0 4 1332 2338 96 16 3 chr4 98018313 98018636 -57611484 - ORR1A2 LTR MaLR 0 327 1 5 1332 201 39 0 0 chr4 98019059 98019085 -57611035 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1332 243 0 0 0 chr4 98019157 98019184 -57610936 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1332 469 256 82 37 chr4 98019455 98019676 -57610444 + L1M3 LINE L1 5465 5696 -595 5 1332 650 326 14 35 chr4 98019765 98020051 -57610069 + B4A SINE B4 3 282 -10 5 1332 1549 104 13 31 chr4 98020253 98020482 -57609638 + URR1B DNA MER1_type 1 225 0 5 1332 491 0 17 0 chr4 98020777 98020836 -57609284 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 5 1332 491 243 39 177 chr4 98020913 98021069 -57609051 + ID_B1 SINE B4 1 156 -68 5 1332 1180 68 0 0 chr4 98021069 98021216 -57608904 + B1_Mus1 SINE Alu 2 148 0 5 1332 491 243 39 177 chr4 98021216 98021319 -57608801 + ID_B1 SINE B4 157 224 0 5 1332 412 253 11 0 chr4 98022628 98022719 -57607401 + RSINE1 SINE B4 11 102 -63 5 1332 186 43 0 0 chr4 98022759 98022782 -57607338 + (CG)n Simple_repeat Simple_repeat 1 23 0 6 1332 342 0 0 0 chr4 98022782 98022819 -57607301 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1332 697 223 23 0 chr4 98023037 98023167 -57606953 + B1F SINE Alu 1 133 -16 6 1332 1222 48 0 0 chr4 98023515 98023662 -57606458 + B1_Mus1 SINE Alu 1 147 -1 6 1332 185 0 0 39 chr4 98023662 98023688 -57606432 + (TAA)n Simple_repeat Simple_repeat 2 26 0 6 1332 381 306 54 0 chr4 98023690 98023801 -57606319 + ID_B1 SINE B4 80 196 -28 6 1332 321 319 72 29 chr4 98023696 98023835 -57606285 + B1F2 SINE Alu 5 149 0 6 1332 414 212 0 0 chr4 98023839 98023919 -57606201 + ID4 SINE ID 3 82 -1 6 1332 227 254 32 0 chr4 98023980 98024043 -57606077 + Lx8 LINE L1 7189 7253 -220 6 1332 186 43 0 0 chr4 98024229 98024252 -57605868 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1332 829 221 48 10 chr4 98025258 98025464 -57604656 + B3 SINE B2 1 214 -2 7 1332 499 246 15 45 chr4 98025734 98025866 -57604254 + RSINE1 SINE B4 4 131 -34 7 1332 429 20 0 0 chr4 98025878 98025928 -57604192 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1332 243 0 0 0 chr4 98025932 98025959 -57604161 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1332 24 0 0 0 chr4 98026235 98026259 -57603861 + AT_rich Low_complexity Low_complexity 1 24 0 7 1332 642 183 106 34 chr4 98027124 98027361 -57602759 + Charlie2b DNA MER1_type 2513 2766 -16 7 1332 456 294 0 0 chr4 98027400 98027519 -57602601 + PB1D7 SINE Alu 1 119 -1 7 1332 763 264 14 37 chr4 98027525 98027741 -57602379 + B3 SINE B2 1 211 -5 7 1332 240 325 7 146 chr4 98027797 98027941 -57602179 + PB1 SINE Alu 2 125 -2 7 1332 29 28 0 0 chr4 98028946 98028982 -57601138 + AT_rich Low_complexity Low_complexity 1 36 0 7 1332 1167 106 22 27 chr4 98029458 98029643 -57600477 + B2_Mm1a SINE B2 1 184 -9 8 1332 776 288 15 5 chr4 98029671 98029868 -57600252 + B3 SINE B2 1 210 -6 8 1332 348 282 75 10 chr4 98030022 98030067 -57600053 - ID_B1 SINE B4 -48 244 86 8 1332 460 211 48 9 chr4 98030067 98030172 -57599948 - B1F SINE Alu -40 109 1 8 1332 245 289 23 116 chr4 98030172 98030217 -57599903 - MT2B LTR ERVL -444 157 125 8 1332 633 136 0 0 chr4 98030302 98030405 -57599715 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 8 1332 29 0 0 0 chr4 98030641 98030670 -57599450 + AT_rich Low_complexity Low_complexity 1 29 0 8 1332 222 136 90 61 chr4 98030902 98030968 -57599152 - PB1 SINE Alu 0 120 62 8 1332 260 70 23 0 chr4 98031752 98031795 -57598325 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1332 262 299 13 25 chr4 98032907 98032926 -57597194 + ID SINE ID 65 82 -142 8 1332 346 266 13 0 chr4 98032926 98033005 -57597115 + B1_Mur3 SINE Alu 1 80 -69 9 1332 495 196 107 0 chr4 98033015 98033127 -57596993 + B3 SINE B2 18 141 -75 9 1332 746 177 0 30 chr4 98033151 98033285 -57596835 - B1_Mus1 SINE Alu -18 130 1 9 1332 326 247 31 41 chr4 98033285 98033370 -57596750 + B3 SINE B2 120 207 -9 9 1332 234 0 0 0 chr4 98033370 98033396 -57596724 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 9 1332 326 247 31 41 chr4 98033396 98033407 -57596713 + B3 SINE B2 208 215 -1 9 1332 579 241 99 0 chr4 98033408 98033578 -57596542 + L1M2 LINE L1 3580 3767 -2379 9 1332 6163 131 3 27 chr4 98033585 98033986 -57596134 + Lx LINE L1 4903 5299 -584 9 1332 1410 68 0 59 chr4 98033986 98034145 -57595975 + B2_Mm1t SINE B2 2 160 -33 9 1332 207 0 0 0 chr4 98034145 98034168 -57595952 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 9 1332 1410 68 0 59 chr4 98034168 98034212 -57595908 + B2_Mm1t SINE B2 161 193 0 9 1332 7230 123 9 20 chr4 98034212 98034719 -57595401 + Lx LINE L1 5300 5789 -94 9 1332 1417 85 11 0 chr4 98034719 98034907 -57595213 + B2_Mm1t SINE B2 2 191 -2 9 1332 7230 112 18 11 chr4 98034907 98035756 -57594364 + Lx LINE L1 5790 6654 0 9 1332 2999 159 112 2 chr4 98035756 98036292 -57593828 + Lx5 LINE L1 6456 7050 0 9 1332 208 241 0 0 chr4 98036300 98036358 -57593762 + A-rich Low_complexity Low_complexity 1 58 0 1 1332 412 319 49 38 chr4 98036363 98036630 -57593490 + L1_Mur3 LINE L1 4292 4561 -1319 1 1332 410 269 23 0 chr4 98036646 98036776 -57593344 + L1M2 LINE L1 5611 5743 -548 1 1332 189 0 0 0 chr4 98038250 98038271 -57591849 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1332 448 310 94 46 chr4 98038470 98038865 -57591255 - L2 LINE L2 -705 2714 2301 1 1332 219 375 42 0 chr4 98038866 98038879 -57591241 + B1F SINE Alu 10 109 -40 1 1332 352 277 12 0 chr4 98038879 98038962 -57591158 + ID_B1 SINE B4 104 187 -37 1 1332 448 212 0 0 chr4 98039076 98039161 -57590959 - PB1D10 SINE Alu 0 117 33 1 1332 357 324 106 16 chr4 98039453 98039641 -57590479 + MLT1J2 LTR MaLR 3 207 -241 1 1332 248 299 92 122 chr4 98039680 98039844 -57590276 + MLT1J2 LTR MaLR 290 448 0 1 1332 25 0 0 0 chr4 98039936 98039961 -57590159 + AT_rich Low_complexity Low_complexity 1 25 0 1 1332 1390 219 52 11 chr4 98040938 98041302 -57588818 + MTEb LTR MaLR 1 379 0 1 166 249 159 0 0 chr4 98041853 98041897 -57588223 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1333 679 273 89 36 chr4 98042186 98042490 -57587630 + MTEb LTR MaLR 57 376 -3 1 1333 439 266 45 30 chr4 98042902 98043034 -57587086 - ID_B1 SINE B4 -4 220 87 1 1333 239 233 186 0 chr4 98043926 98044012 -57586108 - B1F SINE Alu -45 104 3 1 1333 281 235 184 0 chr4 98044043 98044141 -57585979 - PB1D10 SINE Alu -1 116 1 1 1333 301 250 100 0 chr4 98044210 98044310 -57585810 + MER20 DNA MER1_type 71 180 -39 1 1333 429 241 9 26 chr4 98044317 98044432 -57585688 + ID_B1 SINE B4 78 190 -34 1 1333 888 18 0 0 chr4 98044581 98044693 -57585427 + B1_Mm SINE Alu 36 147 0 1 1333 740 218 0 14 chr4 98044990 98045134 -57584986 + B1_Mur1 SINE Alu 2 143 -6 1 1333 1531 176 138 0 chr4 98045434 98045774 -57584346 - MTD LTR MaLR -10 409 23 1 1333 642 169 99 11 chr4 98045771 98045962 -57584158 - MTC-int LTR MaLR -159 1099 892 1 1333 1422 176 143 6 chr4 98046110 98046431 -57583689 + ORR1C2 LTR MaLR 20 384 0 1 1333 380 176 116 42 chr4 98046440 98046535 -57583585 + PB1D9 SINE Alu 14 115 -5 1 1333 1195 54 0 0 chr4 98046543 98046690 -57583430 + B1_Mus1 SINE Alu 2 148 0 1 1333 213 154 0 0 chr4 98046690 98046729 -57583391 + GA-rich Low_complexity Low_complexity 2 40 0 1 1333 288 0 0 0 chr4 98046835 98046867 -57583253 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1333 183 156 0 0 chr4 98047103 98047135 -57582985 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1 1333 626 171 69 15 chr4 98047534 98047665 -57582455 + B1_Mur1 SINE Alu 9 146 -3 1 1333 222 263 174 9 chr4 98047918 98048033 -57582087 - MIRb SINE MIR -99 169 36 1 1333 279 0 0 0 chr4 98048508 98048539 -57581581 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1333 983 75 8 0 chr4 98048540 98048673 -57581447 - B1_Mus1 SINE Alu -13 135 2 1 1333 387 284 128 0 chr4 98048992 98049140 -57580980 + Lx8 LINE L1 7164 7330 -143 1 1333 281 306 0 91 chr4 98049107 98049294 -57580826 + RMER1C Other Other 1170 1339 -3 1 1333 234 0 0 0 chr4 98049514 98049540 -57580580 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1333 476 138 38 0 chr4 98050101 98050181 -57579939 - U6 snRNA snRNA -23 84 2 1 1333 324 0 0 0 chr4 98050190 98050226 -57579894 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1333 383 301 0 37 chr4 98050241 98050348 -57579772 + RSINE1 SINE B4 6 108 -57 1 1333 619 256 45 0 chr4 98050632 98050788 -57579332 + B3 SINE B2 2 164 -52 1 1333 339 247 13 0 chr4 98050785 98050862 -57579258 + RSINE1 SINE B4 15 92 -73 1 1333 242 178 45 61 chr4 98051307 98051373 -57578747 + BC1_Mm scRNA scRNA 20 84 -68 1 1333 1350 311 63 61 chr4 98051586 98051646 -57578474 - Lx6 LINE L1 -33 7017 6960 1 1333 234 0 0 0 chr4 98051646 98051672 -57578448 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1333 1350 311 63 61 chr4 98051672 98052149 -57577971 - Lx6 LINE L1 -91 6959 6479 1 1333 2914 203 79 13 chr4 98052143 98053071 -57577049 - Lx6 LINE L1 -684 6366 5315 1 1333 528 289 8 0 chr4 98053162 98053290 -57576830 - B1_Mur1 SINE Alu -20 129 1 1 1333 228 360 79 8 chr4 98053181 98053307 -57576813 - B4 SINE B4 -94 198 64 1 1333 827 285 33 82 chr4 98053625 98053931 -57576189 + B4 SINE B4 2 292 0 1 1333 1878 174 114 0 chr4 98053987 98054338 -57575782 - ORR1B1 LTR MaLR 0 394 4 1 1333 566 228 173 0 chr4 98054367 98054529 -57575591 - B3 SINE B2 0 216 27 1 1333 787 154 27 40 chr4 98054545 98054694 -57575426 - B1_Mus2 SINE Alu 0 147 1 1 1333 382 241 11 0 chr4 98054744 98054831 -57575289 + B4A SINE B4 6 93 -199 1 1333 24 67 0 0 chr4 98054865 98054910 -57575210 + AT_rich Low_complexity Low_complexity 1 45 0 1 1333 244 314 14 28 chr4 98055094 98055166 -57574954 - PB1D9 SINE Alu -11 109 39 1 1333 275 136 17 0 chr4 98055213 98055272 -57574848 + T-rich Low_complexity Low_complexity 1 60 0 1 1333 828 156 14 0 chr4 98055273 98055414 -57574706 - B1_Mur4 SINE Alu -7 143 1 1 1333 251 143 54 0 chr4 98055622 98055678 -57574442 + MTC LTR MaLR 1 59 -362 1 1333 696 216 6 41 chr4 98055675 98055844 -57574276 + B3 SINE B2 27 189 -27 1 1333 183 42 0 0 chr4 98055855 98055879 -57574241 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1333 597 122 0 17 chr4 98055879 98055996 -57574124 + BC1_Mm scRNA scRNA 10 124 -28 1 1333 851 238 209 44 chr4 98056643 98056744 -57573376 - L1M2 LINE L1 -1127 5016 4896 1 1333 3384 41 5 0 chr4 98056744 98057138 -57572982 + MTA_Mm LTR MaLR 1 396 0 1 1333 9238 43 2 0 chr4 98057138 98058234 -57571886 + MTA_Mm-int LTR MaLR 1 1098 0 1 1333 3467 30 5 0 chr4 98058234 98058628 -57571492 + MTA_Mm LTR MaLR 1 396 0 1 1333 851 238 209 44 chr4 98058628 98058954 -57571166 - L1M2 LINE L1 -1248 4895 4518 1 1333 897 272 76 106 chr4 98059045 98059386 -57570734 + MTE2a LTR MaLR 6 336 -43 1 1333 598 12 49 0 chr4 98059402 98059483 -57570637 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 1 1333 381 235 0 0 chr4 98059488 98059569 -57570551 - B1F2 SINE Alu -16 133 53 1 1333 3496 172 47 52 chr4 98059618 98060722 -57569398 - MTC-int LTR MaLR -7 1251 1 1 1333 2029 141 77 16 chr4 98060730 98061118 -57569002 - MTC LTR MaLR -8 413 2 1 1333 384 189 10 118 chr4 98061275 98061377 -57568743 - B1F SINE Alu -7 142 52 1 1333 417 292 0 83 chr4 98061413 98061581 -57568539 - RSINE1 SINE B4 -4 161 8 1 1333 270 0 0 0 chr4 98061681 98061711 -57568409 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1333 262 318 11 11 chr4 98061795 98061884 -57568236 - L1M2 LINE L1 -2002 4138 4050 1 1333 515 159 347 60 chr4 98065022 98065189 -57564931 - B3 SINE B2 0 216 2 1 1333 758 130 76 0 chr4 98065238 98065369 -57564751 - B1_Mus1 SINE Alu 0 148 8 1 1333 369 276 23 0 chr4 98065447 98065534 -57564586 - B3A SINE B2 -108 90 2 1 1333 753 203 0 28 chr4 98065789 98065931 -57564189 + B1_Mur1 SINE Alu 2 139 -10 1 1333 198 0 0 0 chr4 98065931 98065953 -57564167 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1333 306 0 0 0 chr4 98066575 98066609 -57563511 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1333 488 225 50 0 chr4 98066622 98066742 -57563378 - B1F SINE Alu -10 139 14 1 1333 1659 22 0 0 chr4 98066974 98067158 -57562962 + B2_Mm1a SINE B2 1 184 -9 1 1333 609 226 9 0 chr4 98068653 98068768 -57561352 - PB1D10 SINE Alu 0 117 2 1 1333 21 0 0 0 chr4 98068893 98068914 -57561206 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 328 240 93 0 chr4 98068963 98069038 -57561082 - ID4 SINE ID 0 83 2 1 1333 525 58 0 0 chr4 98069980 98070049 -57560071 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1333 459 0 0 0 chr4 98070554 98070605 -57559515 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1333 306 0 0 0 chr4 98070605 98070638 -57559482 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1333 346 309 124 26 chr4 98071145 98071176 -57558944 - ID_B1 SINE B4 -56 168 125 1 1333 273 29 0 0 chr4 98071176 98071210 -57558910 + (TCCTG)n Simple_repeat Simple_repeat 2 35 0 1 1333 346 309 124 26 chr4 98071210 98071331 -57558789 - ID_B1 SINE B4 -100 124 2 1 1333 910 161 0 0 chr4 98071594 98071743 -57558377 + B1_Mur4 SINE Alu 2 150 0 1 1333 192 77 0 0 chr4 98071751 98071777 -57558343 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1 1333 238 293 141 39 chr4 98071817 98071973 -57558147 - L1M5 LINE L1 -653 5587 5416 1 1333 216 143 0 0 chr4 98072634 98072676 -57557444 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 1 1333 228 271 43 0 chr4 98072687 98072757 -57557363 - ID4_ SINE ID -9 74 2 1 1333 222 171 0 0 chr4 98072809 98072850 -57557270 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1333 425 308 81 14 chr4 98072852 98073000 -57557120 - RSINE1 SINE B4 0 165 8 1 1333 504 247 11 22 chr4 98073080 98073258 -57556862 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1333 394 243 14 21 chr4 98073282 98073425 -57556695 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1333 417 267 70 45 chr4 98073449 98073606 -57556514 - RSINE1 SINE B4 -2 163 3 1 1333 362 268 94 19 chr4 98073638 98073798 -57556322 - Lx8 LINE L1 -2 7471 7300 1 1333 615 224 0 0 chr4 98073885 98074001 -57556119 - PB1D9 SINE Alu -2 118 3 1 1333 521 291 100 41 chr4 98074004 98074456 -57555664 - Lx9 LINE L1 0 7644 7037 1 1333 957 218 23 41 chr4 98074456 98074676 -57555444 - B3 SINE B2 0 216 1 1 1333 839 79 171 23 chr4 98074896 98075025 -57555095 + B1_Mus1 SINE Alu 1 148 0 1 1333 198 103 0 0 chr4 98075025 98075054 -57555066 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1333 306 277 165 19 chr4 98075322 98075425 -57554695 - B3 SINE B2 -89 127 10 1 1333 354 23 0 0 chr4 98075431 98075474 -57554646 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1333 374 195 11 0 chr4 98075509 98075596 -57554524 + CT-rich Low_complexity Low_complexity 1 88 0 2 1333 622 243 7 14 chr4 98075596 98075738 -57554382 - B1_Mur1 SINE Alu -7 142 2 2 1333 307 218 49 106 chr4 98076242 98076365 -57553755 + PB1D7 SINE Alu 5 120 0 2 1333 21 0 0 0 chr4 98076427 98076448 -57553672 + AT_rich Low_complexity Low_complexity 1 21 0 2 1333 434 248 77 70 chr4 98076560 98076716 -57553404 + B3A SINE B2 42 198 0 2 1333 1146 61 0 7 chr4 98076739 98076887 -57553233 + B1_Mus1 SINE Alu 2 148 0 2 1333 470 209 108 8 chr4 98076910 98077040 -57553080 + B1F SINE Alu 1 143 -6 2 1333 441 243 119 100 chr4 98078238 98078448 -57551672 - L1MB7 LINE L1 -2 6182 5969 2 1333 1188 68 0 0 chr4 98078568 98078714 -57551406 + B1_Mus2 SINE Alu 2 147 0 2 1333 355 315 75 15 chr4 98078862 98079062 -57551058 - MLT1A1 LTR MaLR -195 213 2 2 1333 1654 36 0 0 chr4 98079396 98079588 -57550532 - B2_Mm1a SINE B2 0 193 2 2 1333 239 281 47 0 chr4 98080229 98080293 -57549827 - B1F1 SINE Alu -79 70 4 2 1333 503 241 43 7 chr4 98080557 98080695 -57549425 - B1F2 SINE Alu -1 148 6 2 1333 1062 76 7 52 chr4 98080716 98080869 -57549251 - B1_Mus2 SINE Alu 0 147 2 2 1333 297 318 27 0 chr4 98081238 98081348 -57548772 - ID_B1 SINE B4 -24 200 88 2 1333 240 41 82 0 chr4 98081800 98081849 -57548271 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 1333 440 314 0 0 chr4 98082723 98082841 -57547279 - ID_B1 SINE B4 -16 208 91 2 1333 504 265 52 22 chr4 98083768 98083903 -57546217 + RSINE1 SINE B4 8 146 -19 2 1333 385 279 63 52 chr4 98084138 98084312 -57545808 - B3A SINE B2 -18 180 5 2 1333 878 192 155 0 chr4 98084945 98085132 -57544988 + B3 SINE B2 1 216 0 2 1333 448 298 136 24 chr4 98085271 98085522 -57544598 + B4A SINE B4 4 282 -10 2 1333 474 243 0 28 chr4 98085673 98085779 -57544341 + B3 SINE B2 114 216 0 2 1333 412 288 5 107 chr4 98085779 98085966 -57544154 - B3A SINE B2 -30 168 1 2 1333 21 57 0 0 chr4 98085970 98086005 -57544115 + AT_rich Low_complexity Low_complexity 1 35 0 2 1333 389 291 9 9 chr4 98086163 98086274 -57543846 + MER103 DNA DNA 38 148 -18 2 1333 198 331 190 7 chr4 98086411 98086548 -57543572 - MIRb SINE MIR -34 234 73 2 1333 231 292 0 0 chr4 98086692 98086757 -57543363 - MTEa LTR MaLR -313 66 2 2 1333 518 230 124 68 chr4 98086822 98086999 -57543121 + B3A SINE B2 5 191 -7 2 1333 367 296 68 31 chr4 98087120 98087312 -57542808 - MER68 LTR ERVL -239 324 126 2 1333 192 40 0 0 chr4 98088026 98088051 -57542069 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1333 213 94 0 0 chr4 98088113 98088145 -57541975 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1333 300 253 32 0 chr4 98088910 98089005 -57541115 - ID_B1 SINE B4 -32 192 95 2 1333 487 233 26 8 chr4 98089114 98089231 -57540889 - PB1D9 SINE Alu 0 120 2 2 1333 201 237 0 0 chr4 98089306 98089344 -57540776 + polypyrimidine Low_complexity Low_complexity 4 41 0 2 1333 740 175 35 0 chr4 98089368 98089511 -57540609 - B1_Mus1 SINE Alu 0 148 1 2 1333 607 322 91 25 chr4 98090025 98090496 -57539624 + L2 LINE L2 2361 2862 -557 2 1333 457 309 88 17 chr4 98091375 98091615 -57538505 - B4A SINE B4 0 292 36 2 1333 696 301 80 47 chr4 98092077 98092527 -57537593 - MLT1E3 LTR MaLR -4 620 156 2 1333 227 271 0 0 chr4 98092561 98092609 -57537511 - MLT1E3 LTR MaLR -605 48 1 2 1333 3214 53 10 12 chr4 98093202 98093603 -57536517 - MTB LTR MaLR 0 400 1 2 1333 698 221 22 0 chr4 98095858 98095994 -57534126 - B1_Mur1 SINE Alu -8 141 3 2 1333 267 306 0 77 chr4 98095892 98096009 -57534111 - MT2B LTR ERVL -341 260 153 2 1333 6892 112 40 5 chr4 98097008 98098195 -57531925 + Lx LINE L1 5428 6654 0 2 1333 513 0 0 0 chr4 98098202 98098259 -57531861 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1333 416 226 103 59 chr4 98098259 98098395 -57531725 + B1F SINE Alu 7 148 -1 2 1333 420 294 25 0 chr4 98099075 98099194 -57530926 - RSINE1 SINE B4 -38 127 6 2 1333 1113 185 23 23 chr4 98099303 98099519 -57530601 - B3 SINE B2 0 216 1 2 1333 680 219 0 27 chr4 98099563 98099713 -57530407 + B1_Mur1 SINE Alu 3 148 -1 2 1333 249 190 312 12 chr4 98099721 98099801 -57530319 + B3 SINE B2 107 210 -6 2 1333 347 0 0 23 chr4 98099916 98099960 -57530160 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1333 410 219 0 0 chr4 98099979 98100052 -57530068 - B1_Mur4 SINE Alu -77 73 1 2 1333 605 219 62 0 chr4 98100118 98100246 -57529874 + B1_Mur1 SINE Alu 7 142 -7 2 1333 829 179 14 14 chr4 98100254 98100401 -57529719 + B1_Mus2 SINE Alu 1 147 0 2 1333 390 308 92 37 chr4 98100408 98100834 -57529286 - L1MB1 LINE L1 -16 6155 5689 2 1333 459 0 0 0 chr4 98101118 98101169 -57528951 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2 1333 1487 45 17 0 chr4 98101173 98101351 -57528769 - B2_Mm2 SINE B2 -14 181 1 2 1333 450 306 22 66 chr4 98101442 98101624 -57528496 + B4A SINE B4 1 174 -118 2 1333 1958 238 235 39 chr4 98101964 98102818 -57527302 - RMER1B Other Other 0 1066 45 2 1333 661 277 28 28 chr4 98103070 98103282 -57526838 + B3 SINE B2 4 215 -1 2 1333 227 256 0 0 chr4 98104433 98104476 -57525644 + tRNA-Ala-GCY_ tRNA tRNA 33 75 0 2 1333 2879 24 42 0 chr4 98104663 98104995 -57525125 - ORR1A0 LTR MaLR 0 346 1 2 1333 192 83 20 40 chr4 98105094 98105144 -57524976 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 1333 267 207 38 107 chr4 98105628 98105719 -57524401 - B1F SINE Alu -1 116 32 2 1333 601 221 8 24 chr4 98105751 98105876 -57524244 - B1_Mur2 SINE Alu -19 130 8 2 1333 382 302 14 48 chr4 98106348 98106494 -57523626 + RSINE1 SINE B4 2 142 -23 2 1333 581 200 50 0 chr4 98108830 98108950 -57521170 - ID_B1 SINE B4 0 224 99 2 1333 339 252 82 27 chr4 98109161 98109271 -57520849 - ID_B1 SINE B4 -9 215 100 2 1333 747 217 53 132 chr4 98109507 98109735 -57520385 - B3 SINE B2 -5 211 2 2 1333 24 0 0 0 chr4 98109762 98109786 -57520334 + AT_rich Low_complexity Low_complexity 1 24 0 2 1333 295 302 88 73 chr4 98109818 98110022 -57520098 + MER2 DNA MER2_type 13 219 -126 2 1333 367 289 65 7 chr4 98111215 98111368 -57518752 + B3 SINE B2 2 163 -53 2 1333 267 31 0 0 chr4 98111368 98111400 -57518720 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1333 183 80 0 0 chr4 98111550 98111575 -57518545 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1333 435 294 8 38 chr4 98111593 98111724 -57518396 - RSINE1 SINE B4 -35 130 4 2 1333 2259 45 14 3 chr4 98113321 98113613 -57516507 - ORR1A1 LTR MaLR -51 295 1 2 1333 8977 65 3 2 chr4 98113613 98114818 -57515302 - ORR1A1-int LTR MaLR 0 1792 586 2 1333 351 113 0 0 chr4 98114843 98114896 -57515224 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1333 770 189 14 7 chr4 98114900 98115044 -57515076 - B3A SINE B2 -53 145 1 2 1333 633 193 101 29 chr4 98115073 98115212 -57514908 + B1_Mur3 SINE Alu 1 149 0 2 1333 320 240 39 77 chr4 98115768 98115872 -57514248 + B1F1 SINE Alu 32 131 -18 2 1333 234 261 91 1 chr4 98117544 98117636 -57512484 + B1_Mus1 SINE Alu 1 97 -50 2 1333 764 273 51 6 chr4 98117670 98117847 -57512273 + ID_B1 SINE B4 9 193 -31 2 1333 933 309 84 42 chr4 98117970 98118627 -57511493 - Lx7 LINE L1 -1 7472 6778 2 1333 180 217 0 0 chr4 98118678 98118724 -57511396 + CT-rich Low_complexity Low_complexity 4 49 0 2 1333 573 221 126 0 chr4 98118725 98118852 -57511268 - B1F2 SINE Alu 0 149 7 2 1333 202 197 0 66 chr4 98119077 98119153 -57510967 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 2 1333 186 133 0 0 chr4 98119583 98119613 -57510507 + (TTCTG)n Simple_repeat Simple_repeat 1 30 0 2 1333 360 0 0 0 chr4 98119703 98119743 -57510377 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1333 3264 11 43 0 chr4 98121100 98121452 -57508668 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1333 254 286 90 13 chr4 98121519 98121597 -57508523 - MER63B DNA AcHobo 0 436 353 2 1333 222 292 135 0 chr4 98122283 98122379 -57507741 + PB1D10 SINE Alu 9 117 0 2 1333 533 272 281 12 chr4 98123211 98123371 -57506749 - B3 SINE B2 -13 203 1 2 1333 2732 236 59 79 chr4 98123565 98124477 -57505643 - RCHARR1 DNA MER1_type -78 896 3 2 1333 1127 270 24 34 chr4 98124621 98124809 -57505311 - ORR1E LTR MaLR -65 294 109 2 1333 4771 62 0 19 chr4 98124809 98125397 -57504723 - L1_Mus1 LINE L1 0 6567 5991 2 1333 1127 270 24 34 chr4 98125397 98125503 -57504617 - ORR1E LTR MaLR -251 108 3 2 1333 195 184 0 0 chr4 98125755 98125793 -57504327 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1333 267 246 33 66 chr4 98125793 98125854 -57504266 - ID4_ SINE ID -10 73 15 2 1333 208 64 62 21 chr4 98125880 98125928 -57504192 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 1333 1276 291 154 20 chr4 98126282 98127190 -57502930 - Lx7 LINE L1 -1797 5899 4870 2 1333 250 293 37 0 chr4 98127218 98127300 -57502820 - L1MA7 LINE L1 -51 6240 6156 2 1333 574 162 108 28 chr4 98127900 98128054 -57502066 - RMER1B Other Other 0 1066 873 2 1333 345 187 0 0 chr4 98128063 98128138 -57501982 + (CCAA)n Simple_repeat Simple_repeat 3 77 0 2 1333 4074 227 68 18 chr4 98128138 98129028 -57501092 - RMER1B Other Other -130 936 2 2 1333 844 149 101 0 chr4 98129182 98129350 -57500770 + RMER4B LTR ERVK 5 189 -396 3 1333 263 80 40 0 chr4 98129578 98129628 -57500492 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 3 1333 1616 56 0 0 chr4 98129684 98129882 -57500238 - L1Md_A LINE L1 0 6582 6385 3 1333 1942 176 45 53 chr4 98132585 98132962 -57497158 + ORR1D1 LTR MaLR 1 374 0 3 1333 249 310 74 49 chr4 98133339 98133461 -57496659 - B1_Mm SINE Alu -22 125 1 3 1333 421 33 75 11 chr4 98133475 98133568 -57496552 + (TG)n Simple_repeat Simple_repeat 1 99 0 3 1333 194 23 68 23 chr4 98133571 98133615 -57496505 + (TGG)n Simple_repeat Simple_repeat 2 47 0 3 1333 709 194 43 7 chr4 98133619 98133759 -57496361 - B1_Mur4 SINE Alu -1 149 5 3 1333 604 192 51 58 chr4 98133801 98133939 -57496181 + B1_Mur2 SINE Alu 11 147 -2 3 1333 642 271 22 17 chr4 98134378 98134558 -57495562 - B3A SINE B2 -16 182 2 3 1333 299 257 25 118 chr4 98135199 98135318 -57494802 + MT2B LTR ERVL 149 256 -345 3 1333 818 151 40 0 chr4 98135229 98135355 -57494765 + B1F SINE Alu 12 142 -7 3 1333 210 37 0 0 chr4 98136335 98136362 -57493758 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1333 269 268 172 11 chr4 98136699 98136786 -57493334 + B1F SINE Alu 37 137 -12 3 1333 609 263 13 44 chr4 98137275 98137434 -57492686 - RSINE1 SINE B4 -3 162 9 3 1333 816 266 16 10 chr4 98137461 98137655 -57492465 - B3 SINE B2 -8 208 14 3 1333 279 0 0 0 chr4 98138539 98138570 -57491550 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1333 303 203 0 0 chr4 98140218 98140282 -57489838 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1333 418 287 110 67 chr4 98140616 98140825 -57489295 - MIR SINE MIR -27 235 18 3 1333 263 295 13 13 chr4 98141775 98141854 -57488266 - ID4 SINE ID -4 79 1 3 1333 216 0 0 0 chr4 98145144 98145168 -57484952 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1333 23 0 0 0 chr4 98145273 98145296 -57484824 + AT_rich Low_complexity Low_complexity 1 23 0 3 1333 239 315 0 9 chr4 98146641 98146750 -57483370 + (TATG)n Simple_repeat Simple_repeat 4 111 0 3 1333 319 287 181 14 chr4 98146751 98146889 -57483231 - RSINE1 SINE B4 -2 163 3 3 1333 1373 222 183 17 chr4 98147002 98147406 -57482714 - Lx8 LINE L1 -129 7344 6874 3 1333 258 274 42 17 chr4 98147463 98147582 -57482538 + Lx9 LINE L1 7226 7347 -297 3 1333 194 83 56 0 chr4 98147588 98147624 -57482496 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 3 1333 392 223 30 30 chr4 98147624 98147758 -57482362 + Lx9 LINE L1 7508 7641 -3 3 1333 232 317 47 47 chr4 98148001 98148068 -57482052 - B1F SINE Alu -32 117 48 3 1333 347 0 23 0 chr4 98148068 98148111 -57482009 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1333 232 317 47 47 chr4 98148111 98148129 -57481991 - B1F SINE Alu -102 47 32 3 1333 241 214 118 56 chr4 98148174 98148301 -57481819 - MIR3 SINE MIR -109 167 19 3 1333 617 238 84 19 chr4 98149225 98149379 -57480741 + RSINE1 SINE B4 2 165 0 3 1333 710 229 76 12 chr4 98149423 98149595 -57480525 + B3 SINE B2 2 184 -32 3 1333 409 368 61 9 chr4 98150695 98150933 -57479187 + MIR SINE MIR 8 268 0 3 1333 4222 30 6 0 chr4 98151114 98151711 -57478409 - L1Md_F3 LINE L1 -506 6078 5479 3 1333 4309 25 29 0 chr4 98151711 98152193 -57477927 + L1Md_F3 LINE L1 6088 6583 -1 3 1333 458 255 0 10 chr4 98152220 98152323 -57477797 - B3A SINE B2 -80 118 17 3 1333 397 348 17 80 chr4 98152368 98152543 -57477577 - RSINE1 SINE B4 0 165 2 3 1333 728 264 28 46 chr4 98152653 98152871 -57477249 - MTEb LTR MaLR -2 377 164 3 1333 225 82 39 58 chr4 98152889 98152941 -57477179 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 3 1333 409 33 48 16 chr4 98152941 98153003 -57477117 - B1_Mus2 SINE Alu 0 147 84 3 1333 238 292 39 55 chr4 98153730 98153857 -57476263 - Lx8 LINE L1 -228 7245 7121 3 1333 189 0 0 0 chr4 98153857 98153878 -57476242 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1333 929 78 148 0 chr4 98153878 98154006 -57476114 - B1_Mus1 SINE Alu 0 148 2 3 1333 388 242 244 23 chr4 98154963 98155094 -57475026 + RSINE1 SINE B4 4 163 -2 3 1333 347 102 0 0 chr4 98155397 98155446 -57474674 - HAL1-3A_ME LINE L1 -834 2024 1976 3 1333 279 0 0 0 chr4 98155452 98155483 -57474637 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1333 453 147 0 0 chr4 98155482 98155577 -57474543 + (TG)n Simple_repeat Simple_repeat 1 95 0 3 1333 243 0 0 0 chr4 98155579 98155606 -57474514 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1333 302 307 0 13 chr4 98157065 98157141 -57472979 + PB1D7 SINE Alu 2 76 -44 3 1333 344 136 91 0 chr4 98157364 98157430 -57472690 - HAL1-3A_ME LINE L1 -811 2047 1976 3 1333 442 341 22 22 chr4 98157513 98157693 -57472427 - B4A SINE B4 -18 274 95 3 1333 524 223 47 71 chr4 98158668 98158837 -57471283 - B3A SINE B2 -7 191 27 3 1333 24 32 0 0 chr4 98159041 98159072 -57471048 + AT_rich Low_complexity Low_complexity 1 31 0 3 1333 1286 156 32 5 chr4 98159075 98159294 -57470826 - URR1A DNA MER1_type 0 226 2 3 1333 293 326 92 7 chr4 98159553 98159695 -57470425 - MIR SINE MIR -18 244 91 3 1333 396 0 0 0 chr4 98161859 98161903 -57468217 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1333 194 0 39 0 chr4 98161910 98161936 -57468184 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1333 22 0 0 0 chr4 98162038 98162060 -57468060 + AT_rich Low_complexity Low_complexity 1 22 0 3 1333 509 323 75 0 chr4 98162124 98162257 -57467863 + RSINE1 SINE B4 2 144 -21 3 1333 25 0 0 0 chr4 98162293 98162318 -57467802 + AT_rich Low_complexity Low_complexity 1 25 0 3 1333 23 0 0 0 chr4 98162928 98162951 -57467169 + AT_rich Low_complexity Low_complexity 1 23 0 3 1333 21 36 0 0 chr4 98164614 98164642 -57465478 + AT_rich Low_complexity Low_complexity 1 28 0 3 1333 873 0 0 0 chr4 98164655 98164752 -57465368 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 3 1333 1086 113 0 0 chr4 98164758 98164900 -57465220 - B1_Mus1 SINE Alu -5 143 2 3 1333 218 130 36 36 chr4 98164913 98164969 -57465151 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 1333 1020 202 20 20 chr4 98165043 98165245 -57464875 - B3 SINE B2 0 216 15 3 1333 747 291 89 11 chr4 98166524 98166805 -57463315 - L1MB3 LINE L1 -52 6131 5829 3 1333 301 279 0 0 chr4 98167405 98167473 -57462647 - B3A SINE B2 -118 80 13 3 1333 337 219 60 24 chr4 98168041 98168125 -57461995 - L1MB3 LINE L1 -446 5734 5648 3 1333 300 295 124 33 chr4 98168142 98168384 -57461736 - MER65D LTR ERV1 -21 452 189 3 1333 358 287 37 9 chr4 98168528 98168637 -57461483 + ID_B1 SINE B4 104 215 -9 3 1333 216 235 10 174 chr4 98169224 98169322 -57460798 - PB1D10 SINE Alu -30 87 6 3 1333 283 207 118 62 chr4 98169322 98169466 -57460654 - L1MB3 LINE L1 -739 5444 5293 3 1333 394 172 509 7 chr4 98169607 98169747 -57460373 + B3 SINE B2 4 215 -1 3 1333 266 138 300 92 chr4 98170041 98170161 -57459959 - B2_Mm2 SINE B2 -4 191 47 3 1333 1151 103 91 0 chr4 98170237 98170402 -57459718 - B2_Mm2 SINE B2 -14 181 2 3 1333 1162 112 47 0 chr4 98170403 98170572 -57459548 - B2_Mm2 SINE B2 -18 177 1 3 1333 293 244 36 12 chr4 98170683 98170766 -57459354 + PB1D10 SINE Alu 12 96 -21 3 1333 222 246 49 0 chr4 98170868 98170929 -57459191 + CT-rich Low_complexity Low_complexity 1 64 0 3 1333 27 49 0 0 chr4 98170943 98170984 -57459136 + AT_rich Low_complexity Low_complexity 1 41 0 3 1333 303 299 75 25 chr4 98170993 98171154 -57458966 - MLT1A0 LTR MaLR 0 365 197 3 1333 309 247 201 20 chr4 98171314 98171463 -57458657 - MER34 LTR ERV1 -48 494 319 3 1333 453 285 25 25 chr4 98171489 98171651 -57458469 - MER34 LTR ERV1 -326 216 55 3 1333 230 253 48 0 chr4 98172592 98172675 -57457445 - Lx9 LINE L1 -6 7638 7552 3 1334 210 128 0 0 chr4 98173470 98173509 -57456611 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1334 1104 82 0 13 chr4 98173512 98173661 -57456459 - B1_Mus1 SINE Alu 0 148 2 3 1334 273 381 50 17 chr4 98174131 98174310 -57455810 - Lx8 LINE L1 -117 7356 7172 3 1334 207 0 0 0 chr4 98174885 98174908 -57455212 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1334 1211 61 78 18 chr4 98175000 98175166 -57454954 + B2_Mm2 SINE B2 2 177 -18 3 1334 22 0 0 0 chr4 98175530 98175552 -57454568 + AT_rich Low_complexity Low_complexity 1 22 0 3 1334 224 172 50 70 chr4 98176806 98176906 -57453214 + (CAGGG)n Simple_repeat Simple_repeat 3 100 0 3 1334 247 277 46 0 chr4 98177563 98177628 -57452492 - RSINE1 SINE B4 -83 82 15 3 1334 649 250 60 0 chr4 98178050 98178234 -57451886 - ID_B1 SINE B4 -28 196 2 3 1334 502 248 138 76 chr4 98178351 98178626 -57451494 + B4A SINE B4 1 292 0 3 1334 254 282 28 0 chr4 98178870 98178941 -57451179 + RSINE1 SINE B4 76 148 -17 3 1334 301 289 89 40 chr4 98178981 98179082 -57451038 + B3A SINE B2 59 164 -34 3 1334 350 224 52 13 chr4 98179082 98179159 -57450961 + PB1D9 SINE Alu 24 103 -17 3 1334 875 281 44 4 chr4 98179215 98179465 -57450655 + B4A SINE B4 33 292 0 3 1334 313 222 41 14 chr4 98179637 98179710 -57450410 + RSINE1 SINE B4 91 165 0 3 1334 686 309 68 38 chr4 98182240 98182610 -57447510 + L1MA5A LINE L1 5549 5929 -368 3 1334 225 154 0 0 chr4 98182627 98182666 -57447454 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1334 366 306 51 7 chr4 98182799 98182937 -57447183 + RSINE1 SINE B4 5 148 -17 3 1334 1189 302 107 31 chr4 98182947 98183895 -57446225 + L1MA5 LINE L1 4833 5908 -392 3 1334 429 20 0 0 chr4 98183895 98183945 -57446175 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1334 439 287 218 37 chr4 98184524 98184850 -57445270 + MTD LTR MaLR 1 385 -34 4 1334 269 120 40 0 chr4 98185033 98185083 -57445037 - MTD LTR MaLR 0 419 368 4 1334 2212 158 73 8 chr4 98185746 98186141 -57443979 + MTC LTR MaLR 1 421 0 4 1334 266 308 131 16 chr4 98186819 98186941 -57443179 + PB1D10 SINE Alu 14 149 0 4 1334 905 228 14 28 chr4 98187985 98188202 -57441918 - B3 SINE B2 -1 215 2 4 1334 361 325 43 0 chr4 98188305 98188422 -57441698 - ID_B1 SINE B4 -20 204 83 4 1334 457 277 58 10 chr4 98188441 98188675 -57441445 - L1MD LINE L1 -689 5670 5421 4 1334 395 361 30 0 chr4 98188798 98188967 -57441153 + B3A SINE B2 1 174 -24 4 1334 552 330 68 53 chr4 98190931 98191386 -57438734 - Charlie8 DNA MER1_type -602 1826 1365 4 1334 3086 11 49 0 chr4 98191558 98191908 -57438212 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1334 56777 24 15 2 chr4 98191908 98198297 -57431823 - IAPEz-int LTR ERVK 0 6481 8 4 1334 3086 11 49 0 chr4 98198297 98198647 -57431473 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1334 352 282 146 0 chr4 98198822 98198932 -57431188 - PB1 SINE Alu 0 127 2 4 1334 324 120 0 0 chr4 98199236 98199286 -57430834 + (CATA)n Simple_repeat Simple_repeat 2 51 0 4 1334 189 0 0 0 chr4 98199481 98199502 -57430618 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 4 1334 259 125 42 0 chr4 98200001 98200049 -57430071 + B3A SINE B2 1 50 -148 4 1334 785 177 156 27 chr4 98200460 98200646 -57429474 + B3 SINE B2 1 210 -6 4 1334 183 42 0 0 chr4 98200737 98200761 -57429359 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1334 2780 133 7 9 chr4 98200898 98201352 -57428768 + RLTR11B LTR ERVK 1 453 0 4 1334 665 192 8 0 chr4 98201894 98202019 -57428101 - B1F2 SINE Alu -13 136 11 4 1334 361 224 149 0 chr4 98202019 98202126 -57427994 - ID_B1 SINE B4 -8 216 94 4 1334 254 274 47 9 chr4 98202889 98202996 -57427124 - L1M5 LINE L1 -1416 4730 4620 4 1334 220 231 170 19 chr4 98203330 98203436 -57426684 - B1F1 SINE Alu -27 122 1 4 1334 248 333 0 0 chr4 98203477 98203555 -57426565 + B3A SINE B2 45 122 -76 4 1334 265 246 254 0 chr4 98203907 98203945 -57426175 + B1F1 SINE Alu 11 148 -1 4 1334 291 236 69 0 chr4 98203945 98204017 -57426103 + ID_B1 SINE B4 147 223 -1 4 1334 23 0 0 0 chr4 98205510 98205533 -57424587 + AT_rich Low_complexity Low_complexity 1 23 0 4 1334 274 300 21 41 chr4 98207002 98207121 -57422999 - MIR SINE MIR -31 177 52 4 1334 243 0 0 0 chr4 98208281 98208308 -57421812 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1334 1872 165 94 3 chr4 98208741 98209123 -57420997 - MTC LTR MaLR 0 421 5 4 1334 297 300 144 0 chr4 98209698 98209858 -57420262 - Lx9 LINE L1 -153 7491 7309 4 1334 427 239 22 0 chr4 98210364 98210456 -57419664 - PB1D10 SINE Alu -1 116 23 4 1334 216 0 0 0 chr4 98210993 98211017 -57419103 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1334 693 239 241 7 chr4 98211497 98211767 -57418353 - ORR1D2 LTR MaLR -37 333 1 4 1334 261 0 0 0 chr4 98211976 98212005 -57418115 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1334 192 77 0 0 chr4 98212857 98212883 -57417237 + (GGCTG)n Simple_repeat Simple_repeat 3 28 0 4 1334 225 0 0 0 chr4 98215023 98215048 -57415072 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1334 204 255 20 0 chr4 98215393 98215444 -57414676 + (TATG)n Simple_repeat Simple_repeat 1 52 0 4 1334 445 230 11 0 chr4 98215492 98215579 -57414541 - B3A SINE B2 -83 115 28 4 1334 821 150 20 26 chr4 98216839 98216990 -57413130 - B1_Mur4 SINE Alu 0 150 1 4 1334 401 196 168 0 chr4 98216998 98217105 -57413015 - B1F SINE Alu -8 141 17 4 1334 507 107 0 0 chr4 98218436 98218511 -57411609 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1334 342 270 86 14 chr4 98219340 98219479 -57410641 - RSINE1 SINE B4 -14 151 3 4 1334 1207 279 146 19 chr4 98219515 98220267 -57409853 - L1MB2 LINE L1 -282 5889 5036 4 1334 237 277 96 48 chr4 98220841 98220966 -57409154 - MIRc SINE MIR -85 183 53 4 1334 198 250 41 14 chr4 98221375 98221448 -57408672 + MIR SINE MIR 81 155 -107 4 1334 21 36 0 0 chr4 98221742 98221770 -57408350 + AT_rich Low_complexity Low_complexity 1 28 0 4 1334 483 219 17 17 chr4 98221947 98222027 -57408093 + B1_Mur4 SINE Alu 35 116 -34 4 1334 186 103 0 0 chr4 98222027 98222056 -57408064 + (TATG)n Simple_repeat Simple_repeat 3 31 0 4 1334 483 219 17 17 chr4 98222056 98222091 -57408029 + B1_Mur4 SINE Alu 117 150 0 4 1334 210 289 39 0 chr4 98222103 98222155 -57407965 - ID4_ SINE ID -28 55 2 4 1334 250 59 0 0 chr4 98224242 98224276 -57405844 - B1_Mus1 SINE Alu -99 49 16 4 1334 219 179 53 18 chr4 98224276 98224299 -57405821 - B4A SINE B4 -159 133 75 4 1334 1213 29 0 0 chr4 98224428 98224566 -57405554 + B1_Mus1 SINE Alu 2 139 -9 4 1334 200 59 29 0 chr4 98224566 98224600 -57405520 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1334 423 0 0 0 chr4 98224727 98224774 -57405346 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1334 231 151 57 0 chr4 98224778 98224831 -57405289 + T-rich Low_complexity Low_complexity 1 56 0 4 1334 216 0 0 0 chr4 98224831 98224855 -57405265 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1334 1115 72 0 0 chr4 98224855 98224993 -57405127 - B1_Mus1 SINE Alu -10 138 1 4 1334 1912 186 50 61 chr4 98224994 98225418 -57404702 + MTC LTR MaLR 3 421 0 4 1334 237 182 0 0 chr4 98225686 98225741 -57404379 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1334 214 29 28 28 chr4 98225877 98225913 -57404207 + (TTG)n Simple_repeat Simple_repeat 2 37 0 4 1334 33 0 0 0 chr4 98226182 98226215 -57403905 + AT_rich Low_complexity Low_complexity 1 33 0 4 1334 185 94 31 0 chr4 98227958 98227990 -57402130 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 1334 451 349 7 7 chr4 98229103 98229253 -57400867 - RSINE1 SINE B4 -14 151 2 4 1334 198 0 0 0 chr4 98231222 98231244 -57398876 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 1334 201 161 0 0 chr4 98232394 98232425 -57397695 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1334 1006 133 162 5 chr4 98232529 98232726 -57397394 + MTC LTR MaLR 186 413 -8 4 1334 509 261 8 8 chr4 98233673 98233804 -57396316 + ID_B1 SINE B4 84 214 -10 4 1334 354 248 204 25 chr4 98233872 98234029 -57396091 + B4A SINE B4 16 200 -92 4 1334 373 300 64 0 chr4 98234100 98234210 -57395910 - PB1D10 SINE Alu 0 117 1 4 1334 1393 205 129 11 chr4 98234490 98234850 -57395270 - MTD LTR MaLR -14 405 13 4 1334 455 204 103 34 chr4 98235946 98236063 -57394057 + ID_B1 SINE B4 82 206 -18 4 1334 195 42 0 0 chr4 98236077 98236101 -57394019 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1334 200 167 37 0 chr4 98236340 98236394 -57393726 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 4 1334 1213 61 0 0 chr4 98236397 98236545 -57393575 - B1_Mus1 SINE Alu 0 148 1 4 1334 289 250 0 0 chr4 98237389 98237453 -57392667 + B3A SINE B2 16 79 -119 4 1334 260 274 0 0 chr4 98237467 98237529 -57392591 + B3 SINE B2 145 206 -10 4 1334 224 211 0 13 chr4 98237652 98237729 -57392391 + CT-rich Low_complexity Low_complexity 2 77 0 4 1334 396 0 0 0 chr4 98237739 98237783 -57392337 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1334 448 348 54 42 chr4 98238802 98239138 -57390982 - MER21B LTR ERV1 -164 699 360 4 1334 557 260 115 40 chr4 98239184 98239384 -57390736 + B3 SINE B2 1 215 -1 4 1334 1544 123 47 0 chr4 98239764 98240000 -57390120 - L1_Mus4 LINE L1 -607 6029 5783 4 1334 14251 76 12 35 chr4 98240082 98240419 -57389701 - L1VL2 LINE L1 -626 2989 2696 4 1334 1315 62 90 0 chr4 98240419 98240596 -57389524 - B2_Mm1t SINE B2 0 193 1 4 1334 14251 80 14 25 chr4 98240596 98243182 -57386938 - L1VL2 LINE L1 -920 2695 105 4 1334 241 163 0 0 chr4 98244430 98244479 -57385641 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 4 1334 1143 76 7 0 chr4 98244479 98244624 -57385496 - B1_Mm SINE Alu 0 147 2 4 1334 676 191 63 0 chr4 98245886 98246012 -57384108 + B1_Mur4 SINE Alu 7 140 -10 4 1334 273 313 8 80 chr4 98245918 98246043 -57384077 + RLTR25A LTR ERVK 522 637 -466 4 1334 224 30 30 0 chr4 98246063 98246096 -57384024 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1334 1127 75 7 0 chr4 98246117 98246263 -57383857 - B1_Mus1 SINE Alu 0 148 2 4 1334 977 197 127 90 chr4 98246770 98246884 -57383236 + ORR1E LTR MaLR 4 113 -246 4 1334 670 208 15 15 chr4 98246884 98247016 -57383104 + B1_Mus2 SINE Alu 3 134 -13 4 1334 977 197 127 90 chr4 98247016 98247224 -57382896 + ORR1E LTR MaLR 114 338 -21 4 1334 405 261 40 40 chr4 98247809 98247828 -57382292 - ID_B1 SINE B4 -1 223 135 4 1334 685 168 17 0 chr4 98247828 98247947 -57382173 - B1_Mur2 SINE Alu -27 122 2 4 1334 1080 237 68 54 chr4 98248659 98249029 -57381091 - MTEb LTR MaLR -2 377 3 4 1334 198 0 0 0 chr4 98249274 98249296 -57380824 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1334 410 304 31 65 chr4 98249362 98249447 -57380673 - Tigger7 DNA MER2_type -10 2481 2409 4 1334 456 230 54 54 chr4 98249447 98249459 -57380661 - B1F SINE Alu -2 147 137 4 1334 402 79 0 0 chr4 98249459 98249522 -57380598 + (TTTAG)n Simple_repeat Simple_repeat 3 65 0 4 1334 456 230 54 54 chr4 98249522 98249656 -57380464 - B1F SINE Alu -13 136 1 4 1334 410 304 31 65 chr4 98249656 98249799 -57380321 - Tigger7 DNA MER2_type -83 2408 2261 4 1334 239 297 55 0 chr4 98249818 98249909 -57380211 - Tigger7 DNA MER2_type -2089 402 307 4 1334 755 145 29 0 chr4 98250142 98250280 -57379840 - B1_Mus1 SINE Alu 0 148 7 4 1334 238 242 136 0 chr4 98250315 98250381 -57379739 - Tigger7 DNA MER2_type -2393 98 24 4 1334 581 235 23 8 chr4 98251185 98251318 -57378802 + RSINE1 SINE B4 2 136 -29 4 1334 397 259 9 9 chr4 98252038 98252147 -57377973 - B1_Mur1 SINE Alu 0 149 41 4 1334 885 246 34 48 chr4 98252239 98252465 -57377655 + B4A SINE B4 2 223 -69 4 1334 357 311 41 0 chr4 98252465 98252587 -57377533 + B3A SINE B2 1 127 -71 5 1334 651 103 0 0 chr4 98252603 98252700 -57377420 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 1334 263 281 60 12 chr4 98253185 98253268 -57376852 + RSINE1 SINE B4 12 98 -67 5 1334 278 315 0 0 chr4 98253763 98253836 -57376284 + ID4 SINE ID 8 80 -3 5 1334 391 255 29 19 chr4 98254890 98254994 -57375126 + PB1D7 SINE Alu 3 107 -13 5 1334 537 16 0 0 chr4 98255008 98255070 -57375050 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 1334 359 254 0 0 chr4 98255136 98255207 -57374913 + ID4_ SINE ID 3 73 -10 5 1334 369 0 0 0 chr4 98255208 98255249 -57374871 + (ATG)n Simple_repeat Simple_repeat 2 42 0 5 1334 1322 93 5 21 chr4 98255260 98255446 -57374674 + B2_Mm1a SINE B2 1 183 -10 5 1334 437 241 93 44 chr4 98255639 98255821 -57374299 - MLT1A LTR MaLR 0 374 184 5 1334 762 11 0 0 chr4 98255821 98255908 -57374212 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 1334 226 220 66 33 chr4 98255908 98255969 -57374151 - B1F2 SINE Alu -76 73 11 5 1334 285 29 0 0 chr4 98256038 98256072 -57374048 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1334 520 289 47 0 chr4 98256079 98256207 -57373913 - RSINE1 SINE B4 -30 135 2 5 1334 187 140 34 34 chr4 98256614 98256673 -57373447 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 5 1334 2731 145 59 25 chr4 98257511 98258034 -57372086 - RLTR20A2 LTR ERVK -37 541 1 5 1334 470 188 71 0 chr4 98259070 98259182 -57370938 + ID_B1 SINE B4 102 221 -3 5 1334 866 237 77 0 chr4 98259523 98259717 -57370403 + B3 SINE B2 2 210 -6 5 1334 215 194 0 114 chr4 98259777 98259847 -57370273 + ID4 SINE ID 22 83 0 5 1334 403 294 79 53 chr4 98260500 98260690 -57369430 + B3A SINE B2 4 198 0 5 1334 1749 232 58 120 chr4 98261137 98261281 -57368839 + Lx7 LINE L1 6821 6968 -728 5 1334 1278 20 0 0 chr4 98261281 98261428 -57368692 + B1_Mus2 SINE Alu 1 147 0 5 1334 1749 232 58 120 chr4 98261428 98261899 -57368221 + Lx7 LINE L1 6969 7398 -298 5 1334 264 270 171 0 chr4 98261932 98262043 -57368077 + Lx7 LINE L1 7563 7692 -4 5 1334 441 36 0 0 chr4 98262482 98262537 -57367583 + (TTGG)n Simple_repeat Simple_repeat 2 56 0 5 1334 453 285 326 13 chr4 98262610 98262915 -57367205 - MLT1A0 LTR MaLR -7 401 1 5 1334 211 282 24 60 chr4 98263176 98263259 -57366861 + ID4_ SINE ID 2 81 -2 5 1334 403 263 50 0 chr4 98263903 98264002 -57366118 - RSINE1 SINE B4 -34 131 28 5 1334 351 0 0 0 chr4 98265866 98265905 -57364215 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1334 312 274 14 0 chr4 98266039 98266112 -57364008 - ID4_ SINE ID -9 74 1 5 1334 986 236 136 3 chr4 98267206 98267508 -57362612 - MTEb LTR MaLR 0 379 38 5 1334 942 295 96 19 chr4 98267519 98268063 -57362057 - L1ME3 LINE L1 -232 5951 5338 5 1334 2349 153 74 3 chr4 98268063 98268455 -57361665 - MTC LTR MaLR 0 421 2 5 1334 942 294 171 19 chr4 98268455 98269024 -57361096 - L1ME3 LINE L1 -809 5337 4674 5 1334 462 208 0 0 chr4 98269504 98269600 -57360520 - L1VL4 LINE L1 -6201 101 6 5 1334 276 243 14 0 chr4 98269639 98269709 -57360411 - RLTR42-int LTR ERVK -3915 1607 1537 5 1334 266 239 15 0 chr4 98269727 98269794 -57360326 - RLTR42-int LTR ERVK -5164 973 906 5 1334 1148 211 108 87 chr4 98269779 98270194 -57359926 - RLTR42-int LTR ERVK -3994 1528 1105 5 1334 318 193 49 4 chr4 98270578 98270664 -57359456 - L1_Mm LINE L1 -616 5828 5711 5 1334 351 102 333 19 chr4 98270668 98270776 -57359344 - B2_Mm2 SINE B2 -7 188 47 5 1334 703 144 16 0 chr4 98270849 98270974 -57359146 - B2_Mm1t SINE B2 -14 179 53 5 1334 645 49 0 0 chr4 98271137 98271218 -57358902 + (GGAGA)n Simple_repeat Simple_repeat 5 85 0 5 1334 21 0 0 0 chr4 98271379 98271400 -57358720 + AT_rich Low_complexity Low_complexity 1 21 0 5 1334 840 250 28 19 chr4 98271402 98271614 -57358506 - B3 SINE B2 0 216 3 5 1334 416 268 39 39 chr4 98272380 98272508 -57357612 + B1F SINE Alu 10 137 -12 5 1334 237 178 0 0 chr4 98272533 98272578 -57357542 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 5 1334 363 305 85 63 chr4 98272578 98272767 -57357353 - MLT1E3 LTR MaLR -14 610 418 5 1334 399 330 43 49 chr4 98273252 98273437 -57356683 - B4A SINE B4 -106 186 3 5 1334 203 188 21 0 chr4 98273451 98273499 -57356621 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1334 423 0 0 0 chr4 98273499 98273546 -57356574 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1334 665 236 142 10 chr4 98273828 98274025 -57356095 + ID_B1 SINE B4 2 224 0 5 1334 1160 232 132 25 chr4 98274678 98275048 -57355072 + MTD LTR MaLR 21 405 -14 5 1334 316 256 12 0 chr4 98275560 98275646 -57354474 - B4A SINE B4 -204 88 2 5 1334 394 237 11 0 chr4 98275864 98275957 -57354163 + ID_B1 SINE B4 130 223 -1 5 1334 296 322 80 89 chr4 98278101 98278428 -57351692 - MLT2B3 LTR ERVL -148 406 83 5 1334 2239 90 9 74 chr4 98278537 98278887 -57351233 - ORR1A2 LTR MaLR 0 327 1 5 1334 1210 49 0 7 chr4 98278931 98279076 -57351044 + B1_Mus1 SINE Alu 5 148 0 5 1334 198 0 0 0 chr4 98279183 98279205 -57350915 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1334 571 209 40 107 chr4 98280256 98280406 -57349714 - B1_Mur1 SINE Alu -8 141 2 5 1334 630 99 0 0 chr4 98280563 98280654 -57349466 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 5 1334 1128 126 16 6 chr4 98280658 98280841 -57349279 - B2_Mm2 SINE B2 -3 192 8 5 1334 427 218 49 6 chr4 98281833 98281971 -57348149 - L1MA8 LINE L1 -23 6289 6152 5 1334 466 246 70 0 chr4 98282028 98282142 -57347978 + B1F SINE Alu 18 139 -10 5 1334 329 256 45 90 chr4 98282142 98282160 -57347960 + ID_B1 SINE B4 99 224 0 5 1334 1111 110 65 21 chr4 98282180 98282366 -57347754 + B2_Mm2 SINE B2 2 195 0 5 1334 385 261 133 0 chr4 98282366 98282531 -57347589 - L1MA8 LINE L1 -157 6134 5948 5 1334 207 69 0 0 chr4 98282609 98282638 -57347482 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1334 289 286 57 0 chr4 98282655 98282760 -57347360 - L1MA8 LINE L1 -495 5796 5686 5 1334 215 214 0 0 chr4 98282770 98282826 -57347294 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 1334 1084 104 0 0 chr4 98282827 98282971 -57347149 - B1_Mus1 SINE Alu 0 148 5 5 1334 253 288 48 36 chr4 98283025 98283108 -57347012 + PB1D10 SINE Alu 29 112 -5 5 1334 226 284 40 0 chr4 98283358 98283432 -57346688 + RSINE1 SINE B4 27 103 -62 5 1334 228 200 32 48 chr4 98284079 98284142 -57345978 + PB1D9 SINE Alu 1 62 -58 5 1334 322 296 61 0 chr4 98284488 98284603 -57345517 + B4A SINE B4 3 124 -168 5 1334 2240 205 198 29 chr4 98284711 98284934 -57345186 - Lx7 LINE L1 -20 7676 7403 5 1334 1241 41 0 7 chr4 98284934 98285083 -57345037 + B1_Mus1 SINE Alu 1 148 0 5 1334 2240 205 198 29 chr4 98285083 98285096 -57345024 - Lx7 LINE L1 -294 7402 7387 5 1334 201 39 0 0 chr4 98285096 98285122 -57344998 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1334 2240 205 198 29 chr4 98285122 98285607 -57344513 - Lx7 LINE L1 -310 7386 6833 5 1334 432 55 0 0 chr4 98285645 98285700 -57344420 + (TAG)n Simple_repeat Simple_repeat 2 56 0 5 1334 211 333 0 0 chr4 98285823 98285883 -57344237 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1334 186 150 0 0 chr4 98286352 98286392 -57343728 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1334 1459 206 142 0 chr4 98286921 98287281 -57342839 + MTD LTR MaLR 1 411 -8 5 1334 1137 138 37 16 chr4 98288542 98288733 -57341387 - B2_Mm2 SINE B2 0 195 1 5 1334 298 312 197 43 chr4 98289056 98289290 -57340830 + Lx8 LINE L1 7113 7382 -91 5 1334 809 166 58 0 chr4 98289402 98289541 -57340579 - B1_Mus1 SINE Alu 0 148 2 5 1334 216 0 0 0 chr4 98291640 98291664 -57338456 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1334 750 78 0 0 chr4 98291664 98291778 -57338342 + (GA)n Simple_repeat Simple_repeat 1 115 0 5 1334 495 235 93 22 chr4 98292044 98292183 -57337937 + B1_Mur1 SINE Alu 1 149 0 5 1334 312 281 37 0 chr4 98292192 98292274 -57337846 + B4A SINE B4 1 85 -207 5 1334 230 291 81 133 chr4 98292313 98292733 -57337387 - RMER10A LTR ERVL -27 415 18 5 1334 358 273 69 123 chr4 98293198 98293474 -57336646 + L1M3 LINE L1 5289 5549 -631 5 1334 513 244 34 107 chr4 98293728 98293934 -57336186 - MER2 DNA MER2_type -64 281 91 5 1334 575 251 173 6 chr4 98294067 98294235 -57335885 + B3A SINE B2 1 196 -2 5 1334 515 266 30 60 chr4 98295873 98295896 -57334224 - Lx4B LINE L1 -518 6540 6522 5 1334 1190 87 9 121 chr4 98295896 98296119 -57334001 - L1_Mus4 LINE L1 -7 6631 6434 5 1334 1576 68 0 0 chr4 98296119 98296311 -57333809 - L1_Mus4 LINE L1 -463 6173 5982 5 1334 7037 99 13 3 chr4 98296311 98297410 -57332710 + L1_Mus4 LINE L1 4839 5947 -691 5 1334 404 319 25 46 chr4 98297407 98297690 -57332430 - Lx8 LINE L1 -31 7442 7166 5 1334 325 230 29 20 chr4 98298251 98298353 -57331767 - B4 SINE B4 -131 161 59 5 1334 180 186 23 0 chr4 98300180 98300223 -57329897 - MIR SINE MIR -107 155 112 5 1334 233 269 19 0 chr4 98300428 98300480 -57329640 + RSINE1 SINE B4 111 163 -2 5 1334 218 257 0 14 chr4 98300498 98300569 -57329551 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1334 1394 190 41 90 chr4 98301398 98301786 -57328334 + ORR1D1 LTR MaLR 6 374 0 5 1334 370 218 80 29 chr4 98302422 98302559 -57327561 - ID_B1 SINE B4 0 224 81 5 1334 347 284 53 0 chr4 98302993 98303088 -57327032 + RSINE1 SINE B4 28 127 -38 5 1334 540 116 0 0 chr4 98303098 98303184 -57326936 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1335 582 196 81 81 chr4 98304432 98304604 -57325516 - RMER10A LTR ERVL -270 172 1 5 1335 631 267 7 13 chr4 98305688 98305840 -57324280 + RSINE1 SINE B4 3 153 -12 5 1335 308 260 144 0 chr4 98306055 98306075 -57324045 - B1F SINE Alu -1 148 30 5 1335 338 214 143 0 chr4 98306075 98306159 -57323961 - ID_B1 SINE B4 -18 206 111 6 1335 1648 198 80 28 chr4 98306338 98306727 -57323393 - MTC LTR MaLR 0 421 13 6 1335 710 239 32 26 chr4 98306735 98306890 -57323230 - B3A SINE B2 -41 157 2 6 1335 590 199 117 44 chr4 98306968 98307105 -57323015 + B1_Mus2 SINE Alu 1 147 0 6 1335 210 345 0 0 chr4 98307199 98307257 -57322863 + ID4_ SINE ID 2 59 -24 6 1335 353 278 23 16 chr4 98307236 98307254 -57322866 + ID_B1 SINE B4 70 198 -26 6 1335 576 209 9 0 chr4 98307254 98307364 -57322756 + B1_Mus1 SINE Alu 9 119 -29 6 1335 584 166 19 19 chr4 98307406 98307560 -57322560 + GA-rich Low_complexity Low_complexity 4 157 0 6 1335 8239 45 5 0 chr4 98307901 98309254 -57320866 - L1Md_F2 LINE L1 0 6582 5224 6 1335 39894 33 0 0 chr4 98309277 98314690 -57315430 - L1Md_T LINE L1 0 6585 1173 6 1335 5804 151 35 40 chr4 98314696 98315838 -57314282 - L1Md_T LINE L1 -5411 1208 102 6 1335 261 327 63 38 chr4 98316095 98316254 -57313866 + B4 SINE B4 10 172 -120 6 1335 570 236 79 0 chr4 98317582 98317709 -57312411 + ID_B1 SINE B4 80 216 -8 6 1335 22 0 0 0 chr4 98317825 98317847 -57312273 + AT_rich Low_complexity Low_complexity 1 22 0 6 1335 27 49 0 0 chr4 98318184 98318225 -57311895 + AT_rich Low_complexity Low_complexity 1 41 0 6 1335 1675 153 5 119 chr4 98318334 98318705 -57311415 - ORR1A4 LTR MaLR 0 329 1 6 1335 667 227 113 0 chr4 98320142 98320292 -57309828 + B3 SINE B2 1 167 -49 6 1335 369 0 0 0 chr4 98320292 98320333 -57309787 + (CATA)n Simple_repeat Simple_repeat 4 44 0 6 1335 212 232 0 0 chr4 98321121 98321177 -57308943 + C-rich Low_complexity Low_complexity 2 57 0 6 1335 311 339 142 28 chr4 98322048 98322406 -57307714 - Lx8 LINE L1 -1107 6366 5968 6 1335 260 327 44 6 chr4 98322394 98322554 -57307566 - Lx9 LINE L1 -1670 5974 5809 6 1335 26 0 0 0 chr4 98322557 98322583 -57307537 + AT_rich Low_complexity Low_complexity 1 26 0 6 1335 1222 85 102 0 chr4 98322942 98323099 -57307021 + B2_Mm2 SINE B2 2 158 -37 6 1335 432 0 0 0 chr4 98323099 98323147 -57306973 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 6 1335 1222 85 102 0 chr4 98323147 98323165 -57306955 + B2_Mm2 SINE B2 159 193 -2 6 1335 356 263 0 10 chr4 98323689 98323785 -57306335 + Lx9 LINE L1 7502 7596 -48 6 1335 450 0 0 0 chr4 98324024 98324074 -57306046 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1335 273 256 157 33 chr4 98324488 98324609 -57305511 - PB1 SINE Alu -1 148 13 6 1335 263 136 0 0 chr4 98324745 98324789 -57305331 + Lx8 LINE L1 7424 7467 -6 6 1335 240 241 0 65 chr4 98325146 98325208 -57304912 + ID4 SINE ID 4 61 -22 6 1335 282 160 0 0 chr4 98325254 98325304 -57304816 + GA-rich Low_complexity Low_complexity 3 52 0 6 1335 215 362 38 15 chr4 98326658 98326790 -57303330 - L2c LINE L2 -7 3380 3246 6 1335 1455 82 0 5 chr4 98327796 98327991 -57302129 + B2_Mm2 SINE B2 1 194 -1 6 1335 293 335 46 0 chr4 98329239 98329391 -57300729 - L1MA4A LINE L1 -373 5930 5772 6 1335 1761 189 43 26 chr4 98329394 98329904 -57300216 - RLTR20B3 LTR ERVK -5 555 52 6 1335 1858 258 26 35 chr4 98329927 98330389 -57299731 + Lx7 LINE L1 6224 6681 -1015 6 1335 866 286 76 20 chr4 98330394 98330697 -57299423 + Lx7 LINE L1 7048 7367 -329 6 1335 256 322 0 33 chr4 98330741 98330863 -57299257 + Lx7 LINE L1 7564 7681 -15 6 1335 3502 20 5 0 chr4 98331630 98332024 -57298096 - MTA_Mm LTR MaLR 0 396 1 6 1335 234 0 0 0 chr4 98332314 98332340 -57297780 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1335 222 37 0 0 chr4 98333546 98333573 -57296547 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 6 1335 315 0 0 0 chr4 98333574 98333609 -57296511 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1335 368 272 152 45 chr4 98334917 98335094 -57295026 + B3A SINE B2 2 197 -1 6 1335 744 279 95 0 chr4 98335789 98335979 -57294141 + B3 SINE B2 1 208 -8 6 1335 266 295 31 132 chr4 98336056 98336185 -57293935 + PB1D10 SINE Alu 2 117 0 6 1335 395 269 0 0 chr4 98336253 98336331 -57293789 - RSINE1 SINE B4 -83 82 5 6 1335 261 338 67 107 chr4 98336346 98336495 -57293625 - B1F SINE Alu -1 148 6 6 1335 438 267 170 7 chr4 98336693 98336840 -57293280 - MTEb LTR MaLR -5 374 204 6 1335 916 276 43 82 chr4 98337780 98338084 -57292036 + B4A SINE B4 1 292 0 6 1335 248 241 172 0 chr4 98338057 98338144 -57291976 - RMER12 LTR ERVK -471 851 750 6 1335 496 323 18 18 chr4 98338145 98338315 -57291805 + MIR SINE MIR 49 218 -44 6 1335 1605 184 147 0 chr4 98338473 98338672 -57291448 + ORR1D1 LTR MaLR 1 242 -132 6 1335 293 0 27 0 chr4 98338672 98338709 -57291411 + (CCTG)n Simple_repeat Simple_repeat 4 41 0 6 1335 1605 184 147 0 chr4 98338709 98338835 -57291285 + ORR1D1 LTR MaLR 243 373 -1 6 1335 341 182 169 0 chr4 98338836 98338913 -57291207 + ORR1D1-int LTR MaLR 2 91 -1279 6 1335 613 218 31 24 chr4 98338915 98339042 -57291078 + ORR1D1 LTR MaLR 245 372 -2 6 1335 958 128 116 0 chr4 98339155 98339327 -57290793 + B2_Mm2 SINE B2 2 193 -2 6 1335 600 154 18 35 chr4 98339337 98339451 -57290669 + B1_Mur3 SINE Alu 30 141 -8 6 1335 347 268 64 18 chr4 98339466 98339637 -57290483 + L1M2 LINE L1 5131 5309 -834 6 1335 297 231 10 125 chr4 98340215 98340319 -57289801 + MT2B LTR ERVL 149 240 -361 6 1335 636 174 50 0 chr4 98340258 98340379 -57289741 + B1_Mur2 SINE Alu 22 148 -1 6 1335 314 147 53 23 chr4 98340505 98340637 -57289483 + (CA)n Simple_repeat Simple_repeat 2 137 0 6 1335 256 294 206 0 chr4 98341418 98341510 -57288610 - PB1D9 SINE Alu -7 113 3 6 1335 180 0 0 0 chr4 98341836 98341856 -57288264 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1335 330 330 30 0 chr4 98342086 98342186 -57287934 + RSINE1 SINE B4 61 163 -2 6 1335 774 148 66 0 chr4 98342404 98342526 -57287594 + B1_Mur3 SINE Alu 10 139 -10 6 1335 261 0 0 0 chr4 98342526 98342555 -57287565 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1335 556 258 67 0 chr4 98344848 98344968 -57285152 + RSINE1 SINE B4 3 130 -35 6 1335 564 261 32 38 chr4 98345137 98345321 -57284799 + B3 SINE B2 6 195 -3 6 1335 239 324 0 0 chr4 98345613 98345684 -57284436 - MER63D DNA AcHobo -931 130 60 6 1335 572 266 20 47 chr4 98345679 98345829 -57284291 + ID_B1 SINE B4 64 209 -15 6 1335 463 331 30 4 chr4 98345944 98346153 -57283967 + B3A SINE B2 1 214 -2 6 1335 402 21 0 0 chr4 98346505 98346552 -57283568 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1335 1247 85 0 6 chr4 98346552 98346718 -57283402 + B2_Mm2 SINE B2 5 169 -26 6 1335 459 53 316 9 chr4 98346735 98346849 -57283271 + B2_Mm2 SINE B2 47 195 0 6 1335 345 206 28 0 chr4 98346849 98346956 -57283164 + GA-rich Low_complexity Low_complexity 1 110 0 6 1335 347 270 136 29 chr4 98346975 98347078 -57283042 + PB1D10 SINE Alu 1 114 -3 6 1335 633 152 0 0 chr4 98347927 98348026 -57282094 + BC1_Mm scRNA scRNA 1 99 -53 6 1335 571 236 6 6 chr4 98348029 98348191 -57281929 + GA-rich Low_complexity Low_complexity 4 165 0 6 1335 414 0 0 0 chr4 98348950 98348996 -57281124 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1335 661 193 222 22 chr4 98349219 98349399 -57280721 - B3 SINE B2 0 216 1 6 1335 244 265 29 0 chr4 98349520 98349588 -57280532 + ID4_ SINE ID 1 70 -13 6 1335 741 282 122 65 chr4 98349898 98350251 -57279869 - MLT1B LTR MaLR -13 377 5 6 1335 186 195 16 0 chr4 98350282 98350330 -57279790 + MIRc SINE MIR 120 172 -96 6 1335 425 276 104 0 chr4 98350360 98350494 -57279626 + B1F SINE Alu 2 149 0 6 1335 1160 184 46 46 chr4 98350850 98350962 -57279158 + B3 SINE B2 1 116 -100 6 1335 1717 162 87 45 chr4 98350962 98351248 -57278872 + ORR1D1 LTR MaLR 1 305 -69 6 1335 333 0 0 0 chr4 98351248 98351285 -57278835 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1335 1125 73 0 0 chr4 98351288 98351424 -57278696 - B1_Mus2 SINE Alu -11 136 1 6 1335 1717 162 87 45 chr4 98351424 98351489 -57278631 + ORR1D1 LTR MaLR 306 371 -3 6 1335 1160 184 46 46 chr4 98351489 98351592 -57278528 + B3 SINE B2 117 216 0 6 1335 253 256 10 100 chr4 98351778 98351878 -57278242 - RSINE1 SINE B4 0 165 75 6 1335 219 262 91 15 chr4 98352111 98352177 -57277943 - ID SINE ID -153 71 1 6 1335 694 188 60 0 chr4 98352301 98352418 -57277702 - B1_Mur1 SINE Alu 0 149 26 6 1335 312 316 159 16 chr4 98352718 98352975 -57277145 - L1MEf LINE L1 -5629 571 278 6 1335 419 221 0 21 chr4 98353040 98353183 -57276937 + (CA)n Simple_repeat Simple_repeat 1 140 0 6 1335 246 342 73 18 chr4 98353207 98353371 -57276749 - L1MEf LINE L1 -6025 175 3 6 1335 266 254 42 0 chr4 98356207 98356278 -57273842 + ID4_ SINE ID 1 74 -9 6 1335 283 179 29 29 chr4 98356217 98356286 -57273834 + tRNA-Ala-GCY_ tRNA tRNA 6 74 -1 6 1335 356 215 65 0 chr4 98356337 98356430 -57273690 + B1F SINE Alu 29 127 -22 6 1335 341 250 0 56 chr4 98356391 98356480 -57273640 + ID_B1 SINE B4 141 224 0 6 1335 453 310 39 0 chr4 98356515 98356644 -57273476 + ID_B1 SINE B4 91 224 0 6 1335 989 198 49 5 chr4 98356726 98356929 -57273191 + B3 SINE B2 5 216 0 6 1335 29 0 0 0 chr4 98356932 98356961 -57273159 + AT_rich Low_complexity Low_complexity 1 29 0 6 1335 373 191 84 11 chr4 98357068 98357163 -57272957 - PB1D10 SINE Alu -4 113 12 6 1335 644 258 59 7 chr4 98357659 98357811 -57272309 - B4 SINE B4 -130 162 3 6 1335 946 229 11 27 chr4 98358220 98358408 -57271712 - B3A SINE B2 -12 186 2 6 1335 468 245 34 8 chr4 98359442 98359564 -57270556 + RSINE1 SINE B4 7 132 -33 6 1335 1264 27 7 0 chr4 98359697 98359843 -57270277 + B1_Mm SINE Alu 1 147 0 6 1335 267 0 22 44 chr4 98359986 98360031 -57270089 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1335 250 231 0 0 chr4 98360040 98360092 -57270028 - PB1D10 SINE Alu -2 115 64 7 1335 268 234 60 45 chr4 98361017 98361084 -57269036 + B1F SINE Alu 74 141 -8 7 1335 347 250 148 10 chr4 98361104 98361205 -57268915 + HAL1 LINE L1 2302 2416 -91 7 1335 472 258 125 0 chr4 98361264 98361384 -57268736 - RSINE1 SINE B4 -29 136 2 7 1335 675 209 0 63 chr4 98361414 98361557 -57268563 - B1_Mus2 SINE Alu -12 135 2 7 1335 457 281 36 84 chr4 98361557 98361581 -57268539 - ID_B1 SINE B4 -12 212 54 7 1335 224 206 46 18 chr4 98361611 98361735 -57268385 + T-rich Low_complexity Low_complexity 1 127 0 7 1335 622 281 0 54 chr4 98361736 98361883 -57268237 - B1F SINE Alu -2 147 9 7 1335 200 270 66 26 chr4 98361953 98362029 -57268091 - MER5B DNA MER1_type -80 98 20 7 1335 28 0 0 0 chr4 98362246 98362274 -57267846 + AT_rich Low_complexity Low_complexity 1 28 0 7 1335 1510 32 0 79 chr4 98362569 98362772 -57267348 + B2_Mm1a SINE B2 2 188 -5 7 1335 200 34 0 33 chr4 98363325 98363355 -57266765 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1335 932 155 7 0 chr4 98363366 98363508 -57266612 - B1_Mur4 SINE Alu -1 149 7 7 1335 1196 54 0 0 chr4 98364502 98364649 -57265471 + B1_Mus2 SINE Alu 1 147 0 7 1335 251 0 59 0 chr4 98365571 98365605 -57264515 + (CCCCCT)n Simple_repeat Simple_repeat 3 38 0 7 1335 306 228 146 37 chr4 98366263 98366345 -57263775 + PB1D10 SINE Alu 1 91 -26 7 1335 415 273 18 9 chr4 98366364 98366475 -57263645 + PB1D9 SINE Alu 2 113 -7 7 1335 201 39 0 0 chr4 98366477 98366503 -57263617 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1335 477 178 55 73 chr4 98366749 98366858 -57263262 + PB1D7 SINE Alu 3 109 -11 7 1335 2475 43 16 0 chr4 98367257 98367283 -57262837 - ORR1A0 LTR MaLR -36 310 285 7 1335 225 0 0 0 chr4 98367283 98367308 -57262812 + (CAA)n Simple_repeat Simple_repeat 2 26 0 7 1335 2475 43 16 0 chr4 98367308 98367586 -57262534 - ORR1A0 LTR MaLR -62 284 2 7 1335 378 0 0 0 chr4 98367593 98367635 -57262485 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1335 650 207 202 22 chr4 98367660 98367843 -57262277 + B3 SINE B2 1 216 0 7 1335 236 116 23 0 chr4 98368735 98368778 -57261342 - ID4_ SINE ID -39 44 1 7 1335 293 208 140 40 chr4 98370151 98370251 -57259869 + PB1D10 SINE Alu 3 112 -5 7 1335 632 215 30 23 chr4 98371193 98371326 -57258794 + RSINE1 SINE B4 27 160 -5 7 1335 185 200 29 0 chr4 98371467 98371502 -57258618 + L2c LINE L2 3336 3371 -16 7 1335 1210 41 7 7 chr4 98371611 98371758 -57258362 - B1_Mm SINE Alu 0 147 1 7 1335 635 167 166 26 chr4 98371784 98371958 -57258162 + B3 SINE B2 1 195 0 7 1335 709 177 48 34 chr4 98372000 98372146 -57257974 + B1_Mur2 SINE Alu 2 149 0 7 1335 753 43 0 0 chr4 98372155 98372248 -57257872 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 7 1335 741 255 30 12 chr4 98372270 98372437 -57257683 + B3A SINE B2 2 171 -27 7 1335 333 0 0 0 chr4 98372446 98372483 -57257637 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1335 826 225 49 6 chr4 98373400 98373583 -57256537 + ID_B1 SINE B4 2 192 -32 7 1335 345 228 58 51 chr4 98374149 98374260 -57255860 + B1F SINE Alu 3 112 -5 7 1335 561 294 26 19 chr4 98374265 98374421 -57255699 + RSINE1 SINE B4 2 158 -7 7 1335 450 0 0 0 chr4 98374421 98374471 -57255649 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1335 347 255 143 32 chr4 98374485 98374619 -57255501 + B1F SINE Alu 4 149 0 7 1335 1551 62 0 0 chr4 98374699 98374888 -57255232 - MTB LTR MaLR 0 400 212 7 1335 1708 43 4 118 chr4 98374888 98375150 -57254970 - ORR1A1 LTR MaLR -3 343 112 7 1335 827 30 0 10 chr4 98375149 98375251 -57254869 - B1_Mm SINE Alu 0 147 47 7 1335 934 69 31 11 chr4 98375253 98375401 -57254719 - ORR1A1 LTR MaLR -243 141 1 7 1335 240 195 0 0 chr4 98375408 98375449 -57254671 + PB1D10 SINE Alu 72 112 -5 7 1335 1136 134 47 0 chr4 98375475 98375647 -57254473 + B2_Mm2 SINE B2 1 180 -15 7 1335 1244 89 0 6 chr4 98375648 98375829 -57254291 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1335 645 114 0 0 chr4 98375829 98375952 -57254168 + (CAA)n Simple_repeat Simple_repeat 1 123 0 7 1335 1036 88 36 0 chr4 98375959 98376096 -57254024 + B1_Mus1 SINE Alu 2 143 -5 7 1335 206 118 0 0 chr4 98376102 98376136 -57253984 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1335 183 114 0 0 chr4 98376313 98376348 -57253772 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1335 1003 56 0 0 chr4 98376349 98376475 -57253645 - B1_Mm SINE Alu 0 147 22 7 1335 211 244 43 22 chr4 98376629 98376721 -57253399 + GA-rich Low_complexity Low_complexity 2 95 0 7 1335 916 80 64 28 chr4 98377087 98377228 -57252892 + B1_Mus2 SINE Alu 2 147 0 7 1335 556 157 84 47 chr4 98377383 98377490 -57252630 + B1_Mur3 SINE Alu 6 116 -33 7 1335 253 188 26 172 chr4 98377388 98377504 -57252616 + MT2B LTR ERVL 175 273 -328 7 1335 853 227 86 52 chr4 98377520 98377789 -57252331 + B4A SINE B4 3 280 -12 7 1335 502 265 8 25 chr4 98377924 98378044 -57252076 + PB1D7 SINE Alu 3 120 0 7 1335 442 234 61 35 chr4 98378272 98378387 -57251733 - ID_B1 SINE B4 -26 198 81 7 1335 27 0 0 0 chr4 98378517 98378544 -57251576 + AT_rich Low_complexity Low_complexity 1 27 0 7 1335 261 306 77 58 chr4 98379145 98379249 -57250871 + PB1D7 SINE Alu 11 119 -1 7 1335 280 349 9 0 chr4 98379488 98379594 -57250526 - PB1 SINE Alu -20 107 1 7 1335 198 0 0 0 chr4 98379639 98379661 -57250459 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1335 574 250 25 8 chr4 98379834 98379955 -57250165 + RSINE1 SINE B4 2 124 -41 7 1335 351 0 0 0 chr4 98379955 98379994 -57250126 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1335 463 258 39 108 chr4 98380449 98380653 -57249467 + B3A SINE B2 2 191 -7 7 1335 450 241 37 0 chr4 98380729 98380837 -57249283 + B1_Mur1 SINE Alu 37 148 -1 7 1335 211 136 91 0 chr4 98380837 98380881 -57249239 + GA-rich Low_complexity Low_complexity 2 49 0 7 1335 252 0 0 0 chr4 98381348 98381376 -57248744 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1335 244 220 33 17 chr4 98381486 98381546 -57248574 + ID_B1 SINE B4 152 212 -12 7 1335 22 35 0 0 chr4 98381599 98381628 -57248492 + AT_rich Low_complexity Low_complexity 1 29 0 7 1335 609 58 62 69 chr4 98381883 98382161 -57247959 + CT-rich Low_complexity Low_complexity 1 275 0 7 1335 1042 44 0 72 chr4 98382177 98382294 -57247826 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 7 1335 1269 34 0 0 chr4 98382294 98382441 -57247679 - B1_Mus2 SINE Alu 0 147 1 7 1335 1042 44 0 72 chr4 98382441 98382517 -57247603 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 7 1335 22 0 0 0 chr4 98382517 98382539 -57247581 + AT_rich Low_complexity Low_complexity 1 22 0 7 1335 1259 34 0 0 chr4 98382539 98382685 -57247435 - B1_Mus2 SINE Alu 0 147 2 7 1335 572 50 0 12 chr4 98382685 98382766 -57247354 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 7 1335 798 188 14 0 chr4 98382777 98382921 -57247199 - B1_Mus2 SINE Alu 0 147 2 7 1335 994 122 0 7 chr4 98383030 98383179 -57246941 - B1_Mus1 SINE Alu 0 148 1 7 1335 615 254 42 0 chr4 98383610 98383752 -57246368 + B1_Mur1 SINE Alu 1 148 -1 7 1335 511 307 15 0 chr4 98383762 98383899 -57246221 + B1F2 SINE Alu 3 141 -8 7 1335 1368 78 28 11 chr4 98383949 98384131 -57245989 + B2_Mm2 SINE B2 4 188 -7 7 1335 1173 61 0 26 chr4 98384140 98384291 -57245829 + B1_Mm SINE Alu 1 147 0 7 1335 1245 104 11 21 chr4 98384299 98384485 -57245635 + B2_Mm1t SINE B2 1 184 -9 7 1335 717 68 14 43 chr4 98386836 98386974 -57243146 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 7 1335 1231 68 0 0 chr4 98386989 98387137 -57242983 - B1_Mus1 SINE Alu 0 148 1 7 1335 1200 88 0 0 chr4 98387148 98387308 -57242812 - ORR1B1 LTR MaLR -51 343 184 7 1335 473 231 215 23 chr4 98387366 98387543 -57242577 - B3 SINE B2 -1 215 5 7 1335 663 132 85 0 chr4 98387603 98387709 -57242411 - B1_Mus1 SINE Alu 0 148 34 7 1335 825 212 75 11 chr4 98387710 98387896 -57242224 - B3A SINE B2 0 198 1 7 1335 774 175 8 0 chr4 98387898 98388024 -57242096 - B1_Mur2 SINE Alu -16 133 7 7 1335 324 100 33 83 chr4 98388047 98388167 -57241953 + CT-rich Low_complexity Low_complexity 3 116 0 7 1335 970 108 17 17 chr4 98388167 98388346 -57241774 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 7 1335 989 155 0 0 chr4 98388375 98388523 -57241597 - B1_Mur4 SINE Alu 0 150 3 7 1335 936 82 82 0 chr4 98388575 98388710 -57241410 + B1_Mus2 SINE Alu 2 147 0 7 1335 207 133 0 0 chr4 98388710 98388755 -57241365 + (A)n Simple_repeat Simple_repeat 1 45 0 7 1335 228 270 189 0 chr4 98389724 98389798 -57240322 + ID_B1 SINE B4 19 106 -118 7 1335 1188 213 179 6 chr4 98389813 98390125 -57239995 + ORR1D1 LTR MaLR 9 374 0 7 1335 1345 69 0 91 chr4 98390153 98390361 -57239759 + B2_Mm2 SINE B2 1 189 -6 7 1335 3229 37 3 0 chr4 98390369 98390748 -57239372 + L1Md_F2 LINE L1 6202 6581 -1 7 1335 463 272 36 7 chr4 98390901 98391038 -57239082 - B1_Mur2 SINE Alu -7 142 2 7 1335 234 91 0 0 chr4 98391051 98391084 -57239036 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 7 1335 1033 239 0 0 chr4 98391091 98391279 -57238841 - B3 SINE B2 -28 188 1 7 1335 1214 93 38 6 chr4 98391283 98391300 -57238820 - B2_Mm2 SINE B2 -6 189 168 8 1335 243 79 0 0 chr4 98391300 98391338 -57238782 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8 1335 1214 93 38 6 chr4 98391338 98391503 -57238617 - B2_Mm2 SINE B2 -28 167 2 8 1335 1128 135 0 33 chr4 98391503 98391687 -57238433 - B2_Mm2 SINE B2 -16 179 2 8 1335 1151 47 0 51 chr4 98391718 98391874 -57238246 - B1_Mus1 SINE Alu 0 148 1 8 1335 258 309 73 0 chr4 98392167 98392277 -57237843 + ID_B1 SINE B4 78 195 -29 7 1335 275 333 83 0 chr4 98392189 98392297 -57237823 + B1F SINE Alu 21 137 -12 8 1335 1107 100 0 66 chr4 98392390 98392544 -57237576 + B2_Mm2 SINE B2 2 152 -43 8 1335 738 0 0 0 chr4 98392544 98392626 -57237494 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 8 1335 1107 100 0 66 chr4 98392626 98392653 -57237467 + B2_Mm2 SINE B2 153 171 -24 8 1335 256 319 67 33 chr4 98392672 98392792 -57237328 - PB1 SINE Alu -1 126 3 8 1335 513 215 41 0 chr4 98394358 98394479 -57235641 + B1_Mur2 SINE Alu 21 146 -3 8 1335 1557 210 118 46 chr4 98395252 98395711 -57234409 - RMER5 LTR ERV1 -28 506 15 8 1335 291 196 0 18 chr4 98395883 98395940 -57234180 - ID4 SINE ID -2 81 26 8 1335 774 162 7 22 chr4 98395940 98396079 -57234041 - B1_Mus1 SINE Alu 0 148 12 8 1335 22 56 0 0 chr4 98396079 98396115 -57234005 + AT_rich Low_complexity Low_complexity 1 36 0 8 1335 402 128 132 0 chr4 98396130 98396225 -57233895 - Lx4B LINE L1 -120 6938 6772 8 1335 25 31 0 0 chr4 98396235 98396267 -57233853 + AT_rich Low_complexity Low_complexity 1 32 0 8 1335 1426 80 0 41 chr4 98396268 98396464 -57233656 + B2_Mm2 SINE B2 1 188 -7 8 1335 1110 43 0 7 chr4 98396761 98396900 -57233220 - B1_Mus2 SINE Alu -1 146 9 8 1335 491 242 9 31 chr4 98396913 98397040 -57233080 - B1F1 SINE Alu -3 146 23 8 1335 404 226 66 38 chr4 98397064 98397170 -57232950 - RSINE1 SINE B4 0 165 57 8 1335 291 191 75 60 chr4 98397230 98397297 -57232823 - PB1D7 SINE Alu -1 119 52 8 1335 1074 82 0 0 chr4 98398245 98398380 -57231740 - B1_Mus1 SINE Alu -13 135 1 8 1335 770 155 56 7 chr4 98398509 98398652 -57231468 - B1_Mur4 SINE Alu 0 150 1 8 1335 188 182 22 22 chr4 98398826 98398916 -57231204 + T-rich Low_complexity Low_complexity 5 94 0 8 1335 1595 70 44 0 chr4 98399016 98399244 -57230876 - L1_Mus3 LINE L1 0 6638 6401 8 1335 224 281 119 45 chr4 98399244 98399311 -57230809 - RSINE1 SINE B4 -48 117 46 8 1335 429 212 248 0 chr4 98399336 98399449 -57230671 - B1_Mus2 SINE Alu -6 141 1 8 1335 211 286 111 23 chr4 98399469 98399606 -57230514 - PB1 SINE Alu -2 147 11 8 1335 438 344 34 3 chr4 98400490 98400764 -57229356 + L1MEg LINE L1 1418 1763 -744 8 1335 314 250 18 114 chr4 98400779 98400946 -57229174 + ID_B1 SINE B4 7 157 -67 8 1335 367 131 21 125 chr4 98400857 98400953 -57229167 + MT2B LTR ERVL 155 240 -361 8 1335 665 34 2 14 chr4 98400868 98400968 -57229152 + B1_Mus1 SINE Alu 1 99 -21 8 1335 341 192 141 0 chr4 98401311 98401389 -57228731 - B3A SINE B2 -108 90 2 8 1335 304 270 11 33 chr4 98401603 98401695 -57228425 - PB1D10 SINE Alu -13 104 15 8 1335 216 0 0 0 chr4 98402104 98402128 -57227992 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 8 1335 280 299 23 0 chr4 98402144 98402231 -57227889 - PB1D10 SINE Alu -28 89 1 8 1335 280 267 140 19 chr4 98402283 98402390 -57227730 + PB1D7 SINE Alu 1 120 0 8 1335 219 69 0 0 chr4 98402399 98402428 -57227692 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 8 1335 269 252 81 161 chr4 98402442 98402603 -57227517 + RSINE1 SINE B4 5 152 -13 8 1335 345 47 0 0 chr4 98402603 98402646 -57227474 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8 1335 509 85 0 35 chr4 98403441 98403526 -57226594 + (GGA)n Simple_repeat Simple_repeat 1 82 0 8 1335 1237 361 6 0 chr4 98404273 98404802 -57225318 + HAL1 LINE L1 1178 1709 -798 8 1335 285 240 182 29 chr4 98405369 98405494 -57224626 - B1F SINE Alu 0 149 7 8 1335 644 195 134 80 chr4 98405736 98405937 -57224183 - B3 SINE B2 -3 213 2 8 1335 501 254 185 27 chr4 98405973 98406119 -57224001 + B3 SINE B2 48 216 0 8 1335 366 299 21 0 chr4 98406130 98406227 -57223893 + PB1 SINE Alu 22 120 -7 8 1335 713 126 88 15 chr4 98406551 98406688 -57223432 - B2_Mm2 SINE B2 -2 193 47 8 1335 725 168 0 0 chr4 98407562 98407675 -57222445 - PB1D9 SINE Alu 0 120 8 8 1335 295 256 10 109 chr4 98407585 98407686 -57222434 - MT2B LTR ERVL -351 250 160 8 1335 321 327 18 91 chr4 98407704 98407869 -57222251 - RSINE1 SINE B4 -7 158 6 8 1335 1100 81 0 0 chr4 98408229 98408365 -57221755 + B1_Mus1 SINE Alu 1 136 -12 8 1335 290 24 48 0 chr4 98408676 98408718 -57221402 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 8 1335 1201 50 0 0 chr4 98408718 98408858 -57221262 - B1_Mus1 SINE Alu -8 140 1 8 1335 22 0 0 0 chr4 98408915 98408937 -57221183 + AT_rich Low_complexity Low_complexity 1 22 0 8 1335 29 38 0 19 chr4 98409408 98409438 -57220682 + AT_rich Low_complexity Low_complexity 1 30 0 8 1335 1267 75 51 34 chr4 98409438 98409616 -57220504 + B2_Mm2 SINE B2 1 181 -14 8 1335 29 38 0 19 chr4 98409616 98409639 -57220481 + AT_rich Low_complexity Low_complexity 1 23 0 8 1335 723 253 27 0 chr4 98409646 98409832 -57220288 - B3A SINE B2 -5 193 3 8 1335 189 0 0 0 chr4 98410432 98410453 -57219667 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1335 207 0 0 0 chr4 98410453 98410475 -57219645 + (GA)n Simple_repeat Simple_repeat 1 23 0 8 1335 355 281 0 46 chr4 98411049 98411157 -57218963 - PB1D10 SINE Alu -3 114 12 8 1335 471 262 9 9 chr4 98411062 98411170 -57218950 - ID_B1 SINE B4 -38 186 79 8 1335 258 200 0 68 chr4 98411281 98411340 -57218780 + ID_B1 SINE B4 158 212 -12 8 1335 514 259 30 0 chr4 98411514 98411645 -57218475 + MER5A1 DNA MER1_type 29 163 -3 8 1335 306 276 26 0 chr4 98411716 98411792 -57218328 + B1F SINE Alu 21 98 -51 8 1335 40 37 0 0 chr4 98411805 98411859 -57218261 + AT_rich Low_complexity Low_complexity 1 54 0 8 1335 2241 190 12 24 chr4 98412278 98412698 -57217422 - MTC LTR MaLR 0 421 7 8 1335 318 256 23 11 chr4 98412724 98412811 -57217309 + MIR SINE MIR 81 168 -94 8 1335 780 122 0 25 chr4 98412834 98412847 -57217273 - B1_Mur4 SINE Alu -2 148 138 8 1335 306 0 0 0 chr4 98412847 98412881 -57217239 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 1335 780 122 0 25 chr4 98412881 98412985 -57217135 - B1_Mur4 SINE Alu -13 137 34 8 1335 300 258 10 58 chr4 98412913 98413016 -57217104 - MT2B LTR ERVL -344 257 160 8 1335 462 281 35 0 chr4 98413018 98413132 -57216988 - MER2 DNA MER2_type 0 345 228 8 1335 360 59 0 0 chr4 98413143 98413194 -57216926 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 1335 566 247 47 105 chr4 98413243 98413257 -57216863 - B3A SINE B2 -18 180 167 8 1335 3496 28 2 0 chr4 98413257 98413652 -57216468 + MTA_Mm LTR MaLR 1 396 0 8 1335 333 0 0 0 chr4 98413652 98413689 -57216431 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1335 566 247 47 105 chr4 98413689 98413863 -57216257 - B3A SINE B2 -32 166 3 8 1335 466 206 39 0 chr4 98413953 98414055 -57216065 - MER2 DNA MER2_type -122 223 118 8 1335 570 146 45 64 chr4 98414183 98414293 -57215827 - B1_Mur2 SINE Alu 0 149 42 8 1335 231 254 43 135 chr4 98414196 98414241 -57215879 - MT2B LTR ERVL -316 285 210 8 1335 236 172 15 134 chr4 98414241 98414308 -57215812 - 4.5SRNA scRNA scRNA -6 88 30 8 1335 231 254 43 135 chr4 98414308 98414337 -57215783 - MT2B LTR ERVL -316 209 158 8 1335 1239 62 0 0 chr4 98415325 98415486 -57214634 + (TCCCC)n Simple_repeat Simple_repeat 5 165 0 8 1335 616 130 22 0 chr4 98415495 98415587 -57214533 - B1_Mur3 SINE Alu -14 135 42 8 1335 317 152 103 29 chr4 98415530 98415598 -57214522 - RLTR25B LTR ERVK -530 498 426 8 1335 2515 110 0 3 chr4 98415637 98415984 -57214136 - ORR1A1 LTR MaLR 0 346 1 8 1335 10645 124 72 20 chr4 98415984 98416871 -57213249 - ORR1A1-int LTR MaLR 0 1963 1042 8 1335 1538 42 0 35 chr4 98416871 98417070 -57213050 - B2_Mm1a SINE B2 0 193 2 8 1335 10645 124 72 20 chr4 98417070 98418048 -57212072 - ORR1A1-int LTR MaLR -922 1041 1 8 1335 2395 96 12 0 chr4 98418048 98418371 -57211749 - ORR1A1 LTR MaLR 0 327 1 8 1335 307 280 159 0 chr4 98418664 98418771 -57211349 - MLT1J LTR MaLR -372 140 17 8 1335 1082 62 0 65 chr4 98418930 98419085 -57211035 - B1_Mm SINE Alu -1 146 2 8 1335 305 109 22 0 chr4 98419231 98419277 -57210843 + RLTR11A2 LTR ERVK 3 49 -478 8 1335 2427 172 30 7 chr4 98419873 98420311 -57209809 + RLTR11A2 LTR ERVK 48 495 -32 8 1335 367 290 10 0 chr4 98420312 98420412 -57209708 - RSINE1 SINE B4 -49 116 16 8 1335 243 0 0 0 chr4 98420483 98420510 -57209610 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1335 805 43 50 34 chr4 98420510 98420620 -57209500 - B1_Mm SINE Alu -8 139 27 8 1335 907 32 8 75 chr4 98420622 98420755 -57209365 - B1_Mus1 SINE Alu 0 148 25 8 1335 1149 63 0 0 chr4 98420775 98420918 -57209202 - B1_Mus2 SINE Alu 0 147 5 8 1335 283 287 50 122 chr4 98421388 98421527 -57208593 + MTE2a LTR MaLR 246 374 -5 8 1335 359 271 143 0 chr4 98421637 98421777 -57208343 + MER5A1 DNA MER1_type 4 163 -3 8 1335 189 0 0 0 chr4 98422217 98422238 -57207882 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1335 180 0 0 0 chr4 98423282 98423302 -57206818 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 8 1335 1008 17 0 0 chr4 98423724 98423842 -57206278 - B1_Mus2 SINE Alu -10 137 20 8 1335 312 188 0 0 chr4 98423979 98424043 -57206077 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1335 716 228 120 51 chr4 98424067 98424306 -57205814 - B4 SINE B4 -4 288 23 8 1335 257 278 55 14 chr4 98424614 98424687 -57205433 - B3A SINE B2 -119 79 4 8 1335 324 0 0 0 chr4 98424806 98424842 -57205278 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1335 483 189 0 0 chr4 98425450 98425577 -57204543 + (TG)n Simple_repeat Simple_repeat 1 127 0 9 1335 195 365 86 20 chr4 98426542 98426693 -57203427 - MIR SINE MIR -101 161 1 9 1335 197 303 76 0 chr4 98427279 98427345 -57202775 + MIR SINE MIR 29 99 -163 9 1335 194 336 46 18 chr4 98428361 98428470 -57201650 + L2c LINE L2 3055 3166 -221 9 1335 278 360 63 5 chr4 98428898 98429088 -57201032 + MIRc SINE MIR 16 216 -52 9 1335 1199 181 14 0 chr4 98429309 98429530 -57200590 - URR1B DNA MER1_type 0 225 2 9 1335 26 0 0 0 chr4 98429610 98429636 -57200484 + AT_rich Low_complexity Low_complexity 1 26 0 9 1335 189 0 0 0 chr4 98430138 98430159 -57199961 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1335 1273 40 0 0 chr4 98430159 98430307 -57199813 - B1_Mus1 SINE Alu 0 148 1 9 1335 811 146 243 12 chr4 98430313 98430486 -57199634 - B3 SINE B2 -3 213 1 9 1335 415 296 112 0 chr4 98430495 98430620 -57199500 + LTR40b LTR ERVL 87 225 -237 9 1335 333 0 0 0 chr4 98430776 98430813 -57199307 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1335 414 57 0 0 chr4 98430813 98430865 -57199255 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1335 545 299 76 6 chr4 98431398 98431556 -57198564 + B3A SINE B2 1 169 -29 9 1335 811 120 88 0 chr4 98431565 98431690 -57198430 + B1_Mus1 SINE Alu 11 146 -2 9 1335 180 319 151 25 chr4 98432561 98432680 -57197440 - MIRb SINE MIR -122 146 13 9 1335 667 256 18 49 chr4 98433542 98433706 -57196414 + RSINE1 SINE B4 3 161 -4 9 1335 232 259 70 53 chr4 98434453 98434567 -57195553 + MIRb SINE MIR 36 151 -117 9 166 373 376 28 0 chr4 98434994 98435135 -57194985 - B1F SINE Alu -4 145 1 9 1336 700 288 0 0 chr4 98435155 98435294 -57194826 - RSINE1 SINE B4 -4 161 23 9 1336 52 85 0 0 chr4 98435329 98435458 -57194662 + AT_rich Low_complexity Low_complexity 1 129 0 9 1336 1131 65 82 12 chr4 98435458 98435629 -57194491 - B2_Mm1a SINE B2 -9 184 2 9 1336 960 206 53 10 chr4 98436353 98436559 -57193561 - B3 SINE B2 -1 215 1 9 1336 200 319 164 75 chr4 98436745 98436891 -57193229 + MIRb SINE MIR 36 194 -74 9 1336 293 250 53 0 chr4 98436912 98436988 -57193132 + U6 snRNA snRNA 4 83 -24 9 1336 1071 93 14 5 chr4 98436988 98437165 -57192955 + RMER17A LTR ERVK 1 193 -696 9 1336 1217 55 0 14 chr4 98437173 98437321 -57192799 + B1_Mm SINE Alu 2 147 0 9 1336 1432 82 0 15 chr4 98437348 98437546 -57192574 + B2_Mm2 SINE B2 1 195 0 9 1336 787 189 0 0 chr4 98437563 98437695 -57192425 + B1_Mur2 SINE Alu 18 149 0 9 1336 570 208 0 0 chr4 98437795 98437896 -57192224 + PB1 SINE Alu 23 123 -4 9 1336 391 237 41 10 chr4 98439032 98439130 -57190990 + ID_B1 SINE B4 124 224 0 9 1336 212 255 104 21 chr4 98439515 98439611 -57190509 - MIR3 SINE MIR -6 202 99 9 1336 729 176 8 25 chr4 98439764 98439886 -57190234 - B1_Mur3 SINE Alu -29 120 1 9 1336 202 305 191 0 chr4 98440754 98440859 -57189261 - MIRb SINE MIR -18 250 126 9 1336 310 324 141 21 chr4 98440952 98441094 -57189026 + MIRb SINE MIR 41 199 -69 9 1336 227 346 183 0 chr4 98441159 98441263 -57188857 + L2b LINE L2 3249 3371 -4 9 1336 335 195 214 22 chr4 98441895 98441984 -57188136 + PB1D10 SINE Alu 5 110 -7 9 1336 324 0 0 0 chr4 98441988 98442024 -57188096 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1336 210 358 147 38 chr4 98442030 98442187 -57187933 + MER5B DNA MER1_type 5 178 0 9 1336 686 44 11 0 chr4 98442371 98442461 -57187659 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 9 1336 802 211 68 6 chr4 98442461 98442637 -57187483 - B3 SINE B2 -13 182 1 9 1336 301 238 345 9 chr4 98442731 98442843 -57187277 - RSINE1 SINE B4 -14 151 2 9 1336 258 361 56 0 chr4 98442844 98442952 -57187168 + L2c LINE L2 3268 3381 -6 9 1336 192 40 0 0 chr4 98444959 98444984 -57185136 + (CGGGGG)n Simple_repeat Simple_repeat 5 29 0 9 1336 369 0 0 0 chr4 98447153 98447194 -57182926 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 9 1336 326 246 59 76 chr4 98447889 98448008 -57182112 + PB1D7 SINE Alu 4 120 0 9 1336 396 279 96 36 chr4 98448044 98448211 -57181909 + MIR SINE MIR 86 262 0 9 1336 282 341 30 44 chr4 98448372 98448507 -57181613 - L2b LINE L2 -10 3365 3233 9 1336 365 325 67 117 chr4 98448758 98448998 -57181122 + MLT1H1 LTR MaLR 44 315 -264 9 1336 239 289 0 0 chr4 98449163 98449215 -57180905 + MLT1H1 LTR MaLR 528 579 0 9 1336 320 276 8 87 chr4 98449453 98449580 -57180540 - PB1D10 SINE Alu 0 117 1 9 1336 587 241 139 40 chr4 98450476 98450649 -57179471 + B3A SINE B2 1 190 -8 9 1336 731 191 240 11 chr4 98450669 98450844 -57179276 - B3 SINE B2 0 216 2 9 1336 427 153 42 0 chr4 98451417 98451489 -57178631 - B1_Mus2 SINE Alu -72 75 1 9 1336 263 392 58 7 chr4 98452614 98452768 -57177352 - MIR3 SINE MIR -11 197 36 9 1336 321 267 68 7 chr4 98453930 98454059 -57176061 - MIRb SINE MIR -26 236 99 9 1336 1034 66 44 20 chr4 98455073 98455238 -57174882 - B2_Mm2 SINE B2 -8 187 26 9 1336 251 315 0 0 chr4 98455444 98455517 -57174603 - MIR SINE MIR -124 138 66 9 1336 238 274 148 42 chr4 98455622 98455885 -57174235 + RMER17C LTR ERVK 46 336 -74 9 1336 243 0 0 0 chr4 98456761 98456788 -57173332 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1336 1544 43 0 16 chr4 98458297 98458486 -57171634 + B2_Mm1a SINE B2 1 186 -7 9 1336 1103 82 14 0 chr4 98458501 98458647 -57171473 + B1_Mus1 SINE Alu 1 148 0 9 1336 501 151 0 0 chr4 98458703 98458789 -57171331 + T-rich Low_complexity Low_complexity 1 86 0 9 1336 1251 48 0 0 chr4 98458789 98458935 -57171185 - B1_Mus2 SINE Alu 0 147 2 9 1336 503 254 26 17 chr4 98459363 98459479 -57170641 + RSINE1 SINE B4 12 128 -37 9 1336 393 22 0 0 chr4 98459482 98459528 -57170592 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1336 272 266 61 144 chr4 98459563 98459743 -57170377 + B3A SINE B2 11 175 -23 9 1336 21 36 0 0 chr4 98459788 98459816 -57170304 + AT_rich Low_complexity Low_complexity 1 28 0 9 1336 211 273 167 0 chr4 98459886 98459952 -57170168 + ID_B1 SINE B4 75 151 -73 9 1336 450 0 0 0 chr4 98459995 98460045 -57170075 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1336 464 239 106 0 chr4 98460166 98460279 -57169841 - ID_B1 SINE B4 -3 221 97 9 1336 417 168 82 67 chr4 98460353 98460487 -57169633 + RLTR15 LTR ERVK 33 168 -191 9 1336 557 262 74 47 chr4 98460472 98460728 -57169392 + RLTR15 LTR ERVK 79 341 -18 9 1336 737 152 78 28 chr4 98460951 98461093 -57169027 + B1_Mur4 SINE Alu 2 150 0 9 1336 231 316 41 31 chr4 98461238 98461336 -57168784 + MLT1N2 LTR MaLR 1 99 -463 9 1336 295 376 9 0 chr4 98461669 98461778 -57168342 + Charlie20a DNA Charlie 696 805 -2 9 1336 511 278 158 127 chr4 98462475 98462830 -57167290 + MLT1A1 LTR MaLR 19 384 -24 9 1336 303 49 0 0 chr4 98463775 98463816 -57166304 + (CAG)n Simple_repeat Simple_repeat 2 42 0 9 1336 1053 176 68 11 chr4 98464427 98464617 -57165503 + B3 SINE B2 5 205 -11 9 1336 364 250 139 8 chr4 98465336 98465465 -57164655 - B1F SINE Alu 0 149 4 9 1336 731 286 113 21 chr4 98465556 98465928 -57164192 - L1MA4 LINE L1 -362 5938 5533 9 1336 864 240 29 6 chr4 98466387 98466559 -57163561 - B4A SINE B4 -113 179 4 9 1336 276 175 0 0 chr4 98466591 98466654 -57163466 + CT-rich Low_complexity Low_complexity 2 64 0 9 1336 201 311 0 0 chr4 98466661 98466722 -57163398 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1336 239 268 117 67 chr4 98466722 98466842 -57163278 - MT2B2 LTR ERVL -260 324 199 9 1336 607 233 54 8 chr4 98466754 98466884 -57163236 - B1F SINE Alu -13 136 1 9 1336 189 107 0 0 chr4 98466964 98466992 -57163128 + L2b LINE L2 3337 3364 -11 9 1336 210 380 9 18 chr4 98467969 98468079 -57162041 - L2c LINE L2 -38 3349 3241 9 1336 912 283 24 8 chr4 98469682 98469931 -57160189 + MLT1A0 LTR MaLR 113 365 0 9 1336 263 273 112 11 chr4 98469931 98470020 -57160100 - MIR SINE MIR -151 111 14 9 1336 241 210 161 0 chr4 98470744 98470825 -57159295 + MER33 DNA MER1_type 155 248 -76 9 1336 703 272 0 18 chr4 98471402 98471567 -57158553 + RSINE1 SINE B4 4 165 0 9 1336 198 0 0 0 chr4 98471616 98471638 -57158482 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 9 1336 429 267 156 12 chr4 98471920 98472087 -57158033 + B3A SINE B2 2 192 -6 9 1336 248 204 0 19 chr4 98472651 98472712 -57157408 - MIRb SINE MIR -100 168 103 9 1336 243 0 0 0 chr4 98472755 98472782 -57157338 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1336 186 71 0 0 chr4 98472913 98472941 -57157179 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 9 1336 304 318 144 48 chr4 98473393 98473601 -57156519 - MER102a DNA MER1_type -58 272 45 9 1336 203 242 32 0 chr4 98474333 98474395 -57155725 + GA-rich Low_complexity Low_complexity 4 67 0 9 1336 547 274 68 7 chr4 98474459 98474606 -57155514 + B3 SINE B2 48 203 -13 9 1336 684 328 57 42 chr4 98474830 98475156 -57154964 - MLT1A0 LTR MaLR -14 376 17 9 1336 1254 41 7 0 chr4 98475370 98475516 -57154604 - B1_Mus1 SINE Alu 0 148 2 9 1336 186 320 67 0 chr4 98476107 98476182 -57153938 + MIR3 SINE MIR 110 189 -19 9 1336 276 120 0 0 chr4 98476247 98476297 -57153823 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 1336 180 229 0 0 chr4 98476796 98476831 -57153289 - MIRm SINE MIR -190 86 52 1 1336 1230 35 14 0 chr4 98476833 98476977 -57153143 + B1_Mm SINE Alu 2 147 0 1 1336 786 161 11 6 chr4 98477248 98477423 -57152697 + CT-rich Low_complexity Low_complexity 1 176 0 1 1336 349 282 45 9 chr4 98477604 98477715 -57152405 + PB1D9 SINE Alu 5 119 -1 1 1336 912 318 52 25 chr4 98478262 98478626 -57151494 - Charlie4a DNA MER1_type -31 477 104 1 1336 245 286 143 0 chr4 98479394 98479457 -57150663 + RSINE1 SINE B4 25 96 -69 1 1336 510 46 0 0 chr4 98479476 98479541 -57150579 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1336 294 257 0 0 chr4 98479977 98480082 -57150038 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1336 188 217 21 21 chr4 98481198 98481245 -57148875 + MIRm SINE MIR 221 267 -9 1 1336 281 246 53 145 chr4 98481658 98481810 -57148310 + MIR3 SINE MIR 5 142 -66 1 1336 227 274 0 16 chr4 98481973 98482036 -57148084 - L2b LINE L2 -10 3365 3304 1 1336 196 339 15 0 chr4 98482932 98482997 -57147123 + L2c LINE L2 3268 3333 -54 1 1336 347 332 118 33 chr4 98485183 98485454 -57144666 - Charlie8 DNA MER1_type -2040 388 95 1 1336 738 243 16 70 chr4 98485476 98485662 -57144458 + B3 SINE B2 37 212 -4 1 1336 1124 110 0 0 chr4 98485694 98485839 -57144281 + B1_Mus1 SINE Alu 1 145 -3 1 1336 225 0 0 0 chr4 98485839 98485864 -57144256 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1336 317 214 47 23 chr4 98485999 98486085 -57144035 - MIR SINE MIR -104 104 17 1 1336 570 244 28 89 chr4 98487130 98487257 -57142863 + MER82 DNA MER2_type 31 153 -500 1 1336 1077 268 214 27 chr4 98487257 98487851 -57142269 - MER44D DNA MER2_type 0 705 1 1 1336 570 244 28 89 chr4 98487851 98487903 -57142217 + MER82 DNA MER2_type 154 199 -454 1 1336 641 348 99 79 chr4 98487912 98488492 -57141628 - MER63C DNA AcHobo -179 751 153 1 1336 608 248 65 126 chr4 98488492 98488590 -57141530 - ID_B1 SINE B4 -3 221 129 1 1336 1073 100 135 0 chr4 98488590 98488760 -57141360 - B2_Mm2 SINE B2 -1 194 2 1 1336 608 248 65 126 chr4 98488760 98488774 -57141346 - ID_B1 SINE B4 -96 128 128 1 1336 1069 68 8 0 chr4 98488774 98488907 -57141213 - B1_Mus2 SINE Alu -13 134 1 1 1336 608 248 65 126 chr4 98488907 98489024 -57141096 - ID_B1 SINE B4 -96 128 5 1 1336 641 348 99 79 chr4 98489024 98489177 -57140943 - MER63C DNA AcHobo -778 152 3 1 1336 256 296 64 36 chr4 98489728 98489868 -57140252 + LTR16D LTR ERVL 508 651 0 1 1336 419 216 18 24 chr4 98490057 98490223 -57139897 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 1 1336 630 119 21 54 chr4 98490189 98490310 -57139810 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1336 3789 62 19 4 chr4 98490310 98490778 -57139342 - MT2C_Mm LTR ERVL 0 475 1 1 1336 630 119 21 54 chr4 98490778 98490842 -57139278 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1336 281 97 87 10 chr4 98490861 98490965 -57139155 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 1336 461 71 62 56 chr4 98490986 98491164 -57138956 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1336 247 346 70 77 chr4 98491428 98491820 -57138300 + L2b LINE L2 3002 3387 0 1 1336 717 123 39 0 chr4 98492013 98492143 -57137977 + Lx4A LINE L1 6924 7058 0 1 1336 1243 48 0 0 chr4 98492180 98492327 -57137793 + B1_Mus2 SINE Alu 1 147 0 1 1336 994 80 167 30 chr4 98492430 98492598 -57137522 + B2_Mm2 SINE B2 1 191 -4 1 1336 815 43 259 0 chr4 98492605 98492721 -57137399 + B1_Mm SINE Alu 2 147 0 1 1336 299 23 47 0 chr4 98492721 98492764 -57137356 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1336 353 225 28 0 chr4 98492867 98492938 -57137182 + ID_B1 SINE B4 92 164 -60 1 1336 252 0 0 0 chr4 98492941 98492969 -57137151 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1336 644 93 0 10 chr4 98492990 98493088 -57137032 + (GGA)n Simple_repeat Simple_repeat 3 99 0 1 1336 1279 67 0 11 chr4 98493094 98493275 -57136845 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1336 375 311 78 75 chr4 98493315 98493792 -57136328 + L1ME3A LINE L1 5693 6170 -3 1 1336 1242 61 0 0 chr4 98493797 98493944 -57136176 + B1_Mus1 SINE Alu 2 148 0 1 1336 24 67 0 0 chr4 98494080 98494125 -57135995 + AT_rich Low_complexity Low_complexity 1 45 0 1 1336 381 302 157 52 chr4 98494653 98495036 -57135084 + MLT1F2 LTR MaLR 87 545 -15 1 1336 1377 103 0 10 chr4 98495333 98495529 -57134591 + B2_Mm2 SINE B2 1 194 -1 1 1336 744 173 16 0 chr4 98495671 98495798 -57134322 - B1_Mur1 SINE Alu -17 132 4 1 1336 637 349 130 55 chr4 98495802 98495882 -57134238 + MLT1G LTR MaLR 64 148 -447 1 1336 2664 166 36 18 chr4 98495882 98496378 -57133742 + RLTR16 LTR ERVK 1 505 0 1 1336 817 326 167 5 chr4 98496378 98496752 -57133368 + MLT1G LTR MaLR 149 552 -43 1 1336 731 183 0 40 chr4 98497628 98497753 -57132367 - B1_Mur4 SINE Alu -29 121 2 1 1336 284 289 72 72 chr4 98498885 98499023 -57131097 + B4A SINE B4 87 224 -68 1 1336 450 0 0 0 chr4 98499097 98499147 -57130973 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1336 242 298 87 40 chr4 98499278 98499404 -57130716 - MLT1M LTR MaLR -316 356 225 1 1336 23 33 0 0 chr4 98499586 98499616 -57130504 + AT_rich Low_complexity Low_complexity 1 30 0 1 1336 654 197 7 22 chr4 98500824 98500959 -57129161 + B1_Mur1 SINE Alu 5 137 -12 1 1336 1432 84 16 0 chr4 98500999 98501189 -57128931 + B2_Mm2 SINE B2 2 194 -1 2 1336 449 303 0 0 chr4 98501195 98501317 -57128803 + MLT1A0 LTR MaLR 49 170 -195 3 1336 261 218 0 0 chr4 98501382 98501437 -57128683 - BC1_Mm scRNA scRNA -79 73 19 4 1336 486 33 0 0 chr4 98502842 98502902 -57127218 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1336 223 259 35 0 chr4 98502902 98502960 -57127160 - ID4_ SINE ID -21 62 3 6 1336 318 254 0 0 chr4 98503109 98503176 -57126944 - ID4 SINE ID -9 74 8 7 1336 469 278 99 26 chr4 98503213 98503405 -57126715 - MER3 DNA MER1_type -3 206 1 8 1336 1347 200 4 4 chr4 98503482 98503718 -57126402 - Lx9 LINE L1 -356 7288 7053 9 1336 937 211 47 0 chr4 98503746 98503959 -57126161 + RLTR42 LTR ERVK 17 239 0 1 1336 1063 106 112 0 chr4 98503960 98504139 -57125981 - Lx9 LINE L1 -588 7056 6858 9 1336 603 167 20 14 chr4 98504152 98504298 -57125822 + Lx9 LINE L1 7492 7638 -6 1 1336 230 292 21 73 chr4 98504319 98504415 -57125705 - MLT1D LTR MaLR -60 445 355 1 1336 226 226 136 45 chr4 98504456 98504544 -57125576 - MLT1D LTR MaLR -380 125 30 1 1336 1380 119 4 38 chr4 98505711 98505946 -57124174 - MTB_Mm LTR MaLR -180 227 1 1 1336 271 267 39 87 chr4 98505946 98506073 -57124047 + Charlie4a DNA MER1_type 384 504 -4 1 1336 285 287 106 0 chr4 98506084 98506178 -57123942 + PB1D9 SINE Alu 10 113 -7 1 1336 1471 61 17 0 chr4 98506188 98506369 -57123751 + B2_Mm2 SINE B2 2 185 -10 1 1336 1115 62 114 33 chr4 98506449 98506633 -57123487 + L1_Mus3 LINE L1 6434 6632 -6 1 1336 273 98 0 0 chr4 98506844 98506885 -57123235 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1 1336 857 298 91 83 chr4 98506979 98507593 -57122527 + MER82 DNA MER2_type 4 622 -31 1 1336 316 98 97 16 chr4 98508182 98508218 -57121902 + Lx LINE L1 5936 5971 -683 2 1336 1206 42 0 0 chr4 98508218 98508360 -57121760 + B1_Mus2 SINE Alu 1 142 -5 2 1336 316 98 97 16 chr4 98508360 98508385 -57121735 + Lx LINE L1 5972 6001 -653 2 1336 1006 101 33 13 chr4 98508371 98508521 -57121599 + Lx LINE L1 6174 6326 -328 2 1336 770 67 0 0 chr4 98508527 98508632 -57121488 - B1_Mus1 SINE Alu -42 106 2 2 1336 3005 140 38 11 chr4 98508634 98508647 -57121473 + RMER4B LTR ERVK 21 37 -548 2 1336 219 36 0 0 chr4 98508647 98508675 -57121445 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1336 3005 140 38 11 chr4 98508675 98509211 -57120909 + RMER4B LTR ERVK 38 584 -1 2 1336 2207 134 24 58 chr4 98511762 98512142 -57117978 - ORR1B2 LTR MaLR 0 367 1 2 1336 429 133 0 0 chr4 98512369 98512444 -57117676 + (GGCTG)n Simple_repeat Simple_repeat 4 78 0 2 1336 302 272 70 23 chr4 98513109 98513237 -57116883 - L1MB4 LINE L1 -45 6135 6002 2 1336 435 300 127 0 chr4 98513322 98513472 -57116648 + B3A SINE B2 3 171 -27 2 1336 397 244 41 25 chr4 98513785 98513907 -57116213 + B1F SINE Alu 25 148 -1 2 1336 1548 233 72 58 chr4 98513991 98514538 -57115582 - RLTR18 LTR ERVK -75 541 34 3 1336 311 292 92 50 chr4 98514543 98514570 -57115550 - CYRA11_Mm Unknown Y-chromosome -237 380 288 3 1336 870 183 6 0 chr4 98514570 98514739 -57115381 + URR1A DNA MER1_type 57 226 0 3 1336 311 292 92 50 chr4 98514739 98514781 -57115339 - CYRA11_Mm Unknown Y-chromosome -237 287 133 3 1336 276 281 162 42 chr4 98514781 98514948 -57115172 + L1M2 LINE L1 4212 4398 -1745 3 1336 350 69 0 33 chr4 98514997 98515057 -57115063 + B1_Mm SINE Alu 90 147 0 3 1336 180 0 0 0 chr4 98515057 98515077 -57115043 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1336 377 207 78 98 chr4 98515077 98515237 -57114883 + L1M2 LINE L1 4422 4609 -1534 3 1336 432 0 0 0 chr4 98515242 98515290 -57114830 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1336 786 285 62 31 chr4 98516192 98516514 -57113606 + RMER5 LTR ERV1 11 342 -192 3 1336 210 71 0 0 chr4 98516554 98516582 -57113538 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1336 1173 54 0 13 chr4 98516662 98516811 -57113309 + B1_Mus1 SINE Alu 1 147 -1 3 1336 297 310 68 40 chr4 98516902 98517050 -57113070 - B3A SINE B2 -4 194 43 4 1336 1213 123 54 49 chr4 98517052 98517436 -57112684 - RLTR45 LTR ERVK 0 482 146 4 1336 411 271 71 59 chr4 98517447 98517701 -57112419 + L1M4 LINE L1 3061 3315 -2831 4 1336 192 77 0 0 chr4 98517736 98517762 -57112358 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1336 1181 61 0 0 chr4 98517836 98517983 -57112137 + B1_Mus2 SINE Alu 1 147 0 4 1336 319 275 165 22 chr4 98518292 98518474 -57111646 + MLT1A1 LTR MaLR 6 213 -195 4 1336 661 206 111 90 chr4 98518668 98518902 -57111218 - MLT1A1 LTR MaLR 0 408 170 4 1336 1196 54 0 0 chr4 98519090 98519237 -57110883 + B1_Mus2 SINE Alu 1 147 0 4 1336 426 105 0 0 chr4 98519237 98519283 -57110837 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1336 1214 28 7 0 chr4 98519283 98519428 -57110692 + B1_Mm SINE Alu 2 147 0 4 1336 426 105 0 0 chr4 98519428 98519457 -57110663 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1336 1524 57 0 25 chr4 98519878 98520077 -57110043 - B2_Mm2 SINE B2 0 195 2 5 1336 474 324 0 39 chr4 98520369 98520523 -57109597 + B1F1 SINE Alu 1 148 -1 5 1336 378 247 0 0 chr4 98520681 98520754 -57109366 + RSINE1 SINE B4 74 146 -19 5 1336 322 299 34 0 chr4 98520777 98520894 -57109226 + L1MC4 LINE L1 7250 7370 -672 5 1336 562 307 110 48 chr4 98520918 98521335 -57108785 + L1MC4 LINE L1 7441 7883 -159 5 1336 1048 226 14 32 chr4 98521552 98521771 -57108349 - B3 SINE B2 0 216 2 5 1336 818 134 0 0 chr4 98521802 98521929 -57108191 - B1_Mur3 SINE Alu -9 140 14 5 1336 1305 56 84 0 chr4 98521929 98522107 -57108013 + B2_Mm1t SINE B2 1 193 0 5 1336 279 89 0 0 chr4 98522212 98522257 -57107863 + B1_Mur4 SINE Alu 105 149 -1 5 1336 24 0 0 0 chr4 98522834 98522858 -57107262 + AT_rich Low_complexity Low_complexity 1 24 0 5 1336 664 273 6 36 chr4 98522882 98523049 -57107071 - RSINE1 SINE B4 0 165 4 6 1336 229 365 65 28 chr4 98524416 98524523 -57105597 + Arthur1 DNA Tip100 1 111 -3836 6 1336 1205 42 0 0 chr4 98524566 98524710 -57105410 + B1_Mus2 SINE Alu 2 145 -2 6 1336 221 0 35 0 chr4 98524710 98524739 -57105381 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1336 633 294 99 50 chr4 98524894 98525498 -57104622 + L1MC5 LINE L1 7300 7933 -28 6 1336 2038 138 6 47 chr4 98525853 98526100 -57104020 - ORR1A2 LTR MaLR 0 327 93 6 1336 1120 52 0 0 chr4 98526100 98526235 -57103885 + B1_Mus1 SINE Alu 1 135 -13 6 1336 180 0 0 0 chr4 98526235 98526255 -57103865 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1336 2038 138 6 47 chr4 98526255 98526347 -57103773 - ORR1A2 LTR MaLR -235 92 2 6 1336 1847 146 3 7 chr4 98526353 98526650 -57103470 + ORR1C1 LTR MaLR 1 296 -82 6 1336 1883 173 3 38 chr4 98526655 98527022 -57103098 - ORR1B1 LTR MaLR 0 394 41 6 1336 446 183 0 0 chr4 98527029 98527111 -57103009 + ORR1C1 LTR MaLR 297 378 0 6 1336 459 0 0 0 chr4 98527286 98527337 -57102783 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1336 325 254 77 26 chr4 98527515 98527632 -57102488 + L1MB4 LINE L1 5939 6061 -119 7 1336 476 179 0 8 chr4 98528310 98528428 -57101692 + CT-rich Low_complexity Low_complexity 3 119 0 7 1336 228 364 136 0 chr4 98529436 98529568 -57100552 + RSINE1 SINE B4 2 151 -14 7 1336 25 0 0 0 chr4 98529568 98529593 -57100527 + AT_rich Low_complexity Low_complexity 1 25 0 7 1336 1196 61 0 0 chr4 98529978 98530125 -57099995 - B1_Mus1 SINE Alu 0 148 2 7 1336 1559 113 3 70 chr4 98530129 98530415 -57099705 - ORR1A4 LTR MaLR -62 267 1 7 1336 368 21 0 0 chr4 98530770 98530817 -57099303 + B2_Mm1t SINE B2 2 48 -145 7 1336 592 133 31 0 chr4 98530903 98531001 -57099119 + RMER10A LTR ERVL 1 101 -341 7 1336 1499 159 135 9 chr4 98531005 98531168 -57098952 - RMER10B LTR ERVL -3 395 205 7 1336 742 86 8 8 chr4 98531168 98531285 -57098835 + (GGA)n Simple_repeat Simple_repeat 2 118 0 8 1336 1499 159 135 9 chr4 98531285 98531469 -57098651 - RMER10B LTR ERVL -194 204 4 7 1336 1534 138 47 58 chr4 98531469 98531798 -57098322 + RMER10A LTR ERVL 118 442 0 7 1336 252 0 0 0 chr4 98531933 98531961 -57098159 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1336 1584 32 27 0 chr4 98531966 98532154 -57097966 + B2_Mm1a SINE B2 1 193 0 8 1336 912 121 0 0 chr4 98532926 98533067 -57097053 + (TG)n Simple_repeat Simple_repeat 2 142 0 8 1336 531 155 16 79 chr4 98533067 98533193 -57096927 - B1_Mur1 SINE Alu -17 132 15 8 1336 221 240 69 103 chr4 98533098 98533214 -57096906 - B4A SINE B4 -98 194 83 8 1336 662 245 51 19 chr4 98533643 98533859 -57096261 - LTRIS4 LTR ERV1 0 507 285 8 1336 369 284 25 132 chr4 98534786 98535066 -57095054 - Lx8 LINE L1 -2 7471 7222 8 1336 598 130 0 18 chr4 98535085 98535195 -57094925 + (GAA)n Simple_repeat Simple_repeat 2 109 0 8 1336 1077 245 158 19 chr4 98535195 98535569 -57094551 - Lx8 LINE L1 -245 7228 6803 8 1336 696 265 137 4 chr4 98535666 98535922 -57094198 + MLT1A0 LTR MaLR 71 408 0 8 1336 1661 42 0 0 chr4 98536184 98536374 -57093746 - B2_Mm1a SINE B2 -2 191 2 9 1336 356 265 40 20 chr4 98537516 98537616 -57092504 + LTR33 LTR ERVL 66 167 -348 9 1336 1189 253 141 8 chr4 98537876 98538231 -57091889 + MTD LTR MaLR 1 402 -17 9 1336 741 217 35 66 chr4 98538262 98538459 -57091661 + B3A SINE B2 2 192 -6 9 1336 193 146 20 20 chr4 98538988 98539037 -57091083 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1336 22 35 0 0 chr4 98539045 98539074 -57091046 + AT_rich Low_complexity Low_complexity 1 29 0 9 1336 261 83 111 0 chr4 98539084 98539141 -57090979 + T-rich Low_complexity Low_complexity 18 82 0 9 1336 1275 27 0 0 chr4 98539141 98539288 -57090832 - B1_Mm SINE Alu 0 147 1 9 1336 261 83 111 0 chr4 98539288 98539302 -57090818 + T-rich Low_complexity Low_complexity 4 17 0 9 1336 319 216 45 19 chr4 98539312 98539532 -57090588 + (TTATA)n Simple_repeat Simple_repeat 1 225 0 9 1336 479 326 71 13 chr4 98539723 98539962 -57090158 + LTR33 LTR ERVL 263 515 0 9 1336 185 193 157 67 chr4 98539967 98540056 -57090064 + MIRb SINE MIR 127 223 -45 1 1336 1131 244 26 103 chr4 98540553 98540941 -57089179 - MTE2a LTR MaLR 0 379 22 1 1336 1762 168 42 118 chr4 98541074 98541479 -57088641 + ORR1D1 LTR MaLR 1 374 0 1 1336 1211 50 10 23 chr4 98541575 98541881 -57088239 + (GAAA)n Simple_repeat Simple_repeat 1 301 0 1 1336 1392 62 0 11 chr4 98541923 98542102 -57088018 + B2_Mm2 SINE B2 1 177 -18 1 1336 493 216 19 10 chr4 98542124 98542227 -57087893 - PB1D10 SINE Alu -13 104 1 1 1336 1118 72 0 0 chr4 98543137 98543275 -57086845 + B1_Mus2 SINE Alu 1 138 -9 1 1336 304 0 87 0 chr4 98543275 98543321 -57086799 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1336 578 236 0 0 chr4 98543332 98543438 -57086682 + PB1D9 SINE Alu 3 108 -12 1 1336 552 207 86 0 chr4 98543517 98543633 -57086487 - ID_B1 SINE B4 -8 216 91 1 1336 740 201 93 23 chr4 98543643 98543682 -57086438 + MLT1D LTR MaLR 167 212 -293 1 1336 962 268 108 56 chr4 98543682 98544042 -57086078 - MTEa LTR MaLR 0 379 1 1 1336 740 201 93 23 chr4 98544042 98544216 -57085904 + MLT1D LTR MaLR 213 395 -110 1 1336 517 76 29 51 chr4 98544218 98544356 -57085764 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 1336 4917 185 80 14 chr4 98544406 98544850 -57085270 - RMER1A Other Other 0 1030 552 1 1336 2790 64 143 139 chr4 98544850 98545360 -57084760 + RLTR1B LTR ERV1 1 512 0 1 1336 4917 185 80 14 chr4 98545360 98545881 -57084239 - RMER1A Other Other -479 551 2 1 1336 1169 263 105 65 chr4 98545918 98546394 -57083726 - RMER1B Other Other -532 534 40 1 1336 432 135 0 0 chr4 98546503 98546577 -57083543 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1336 212 172 62 0 chr4 98546993 98547018 -57083102 + T-rich Low_complexity Low_complexity 43 69 0 1 1336 1148 57 0 0 chr4 98547018 98547159 -57082961 - B1_Mus1 SINE Alu -7 141 1 1 1336 212 172 62 0 chr4 98547159 98547197 -57082923 + T-rich Low_complexity Low_complexity 3 42 0 1 1336 763 221 52 66 chr4 98547202 98547415 -57082705 - B3 SINE B2 -6 210 1 1 1336 3075 66 20 5 chr4 98547443 98547837 -57082283 - MTB LTR MaLR 0 400 1 1 1336 1774 123 78 6 chr4 98548017 98548337 -57081783 + RMER6B LTR ERVK 1 343 -118 1 1336 710 279 60 50 chr4 98548519 98549205 -57080915 - L1MA8 LINE L1 -172 6008 5272 1 1336 204 288 12 24 chr4 98549272 98549354 -57080766 + CT-rich Low_complexity Low_complexity 4 84 0 1 1336 1155 62 7 0 chr4 98549376 98549521 -57080599 - B1_Mus1 SINE Alu 0 148 3 1 1336 1290 248 50 15 chr4 98549578 98549918 -57080202 - Lx8 LINE L1 -278 7195 6844 1 1336 510 17 0 0 chr4 98549962 98550021 -57080099 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 1 1336 324 0 0 0 chr4 98550021 98550057 -57080063 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1336 711 307 71 57 chr4 98550080 98550140 -57079980 - L1_Mur3 LINE L1 -2178 3669 3609 1 1336 502 256 152 54 chr4 98550140 98550475 -57079645 + RLTR9A LTR ERVK 1 368 0 1 1336 961 273 83 39 chr4 98550475 98550995 -57079125 - L1_Mur3 LINE L1 -2239 3608 3054 1 1336 231 300 127 17 chr4 98551004 98551177 -57078943 - L1_Mur3 LINE L1 -3441 2439 2248 1 1336 641 140 79 0 chr4 98551240 98551354 -57078766 - B1_Mus2 SINE Alu -15 132 10 1 1336 240 279 0 16 chr4 98551307 98551369 -57078751 - B4 SINE B4 -151 141 81 1 1336 601 183 0 37 chr4 98551397 98551505 -57078615 - B3 SINE B2 -98 118 15 1 1336 298 309 11 0 chr4 98551511 98551605 -57078515 - L1_Mur3 LINE L1 -3662 2218 2124 1 1336 333 254 131 5 chr4 98551894 98552090 -57078030 - L1_Mur3 LINE L1 -3938 1909 1670 1 1336 1166 54 7 0 chr4 98552101 98552248 -57077872 + B1_Mus1 SINE Alu 1 148 0 1 1336 1485 34 0 0 chr4 98552276 98552455 -57077665 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1336 231 36 0 0 chr4 98552455 98552483 -57077637 + (GGAGA)n Simple_repeat Simple_repeat 3 30 0 1 1336 1395 150 8 8 chr4 98552536 98552778 -57077342 + RLTR41 LTR ERV1 205 446 0 1 1336 876 49 81 34 chr4 98552888 98553036 -57077084 - B2_Mm2 SINE B2 -9 186 32 1 1336 674 250 72 6 chr4 98553604 98553785 -57076335 - ID_B1 SINE B4 -25 199 7 1 1336 1240 41 0 0 chr4 98554175 98554322 -57075798 + B1_Mm SINE Alu 1 147 0 1 1336 25 0 0 0 chr4 98554609 98554634 -57075486 + AT_rich Low_complexity Low_complexity 1 25 0 1 1336 186 329 0 52 chr4 98554754 98554831 -57075289 - L2c LINE L2 -55 3332 3260 1 1336 1170 55 0 40 chr4 98555215 98555367 -57074753 + B1_Mus1 SINE Alu 3 148 0 1 1336 718 241 60 0 chr4 98555733 98555899 -57074221 + B3 SINE B2 41 216 0 1 1336 1684 169 10 10 chr4 98555931 98556230 -57073890 + ORR1B1 LTR MaLR 41 339 -55 1 1336 1198 54 7 0 chr4 98556255 98556402 -57073718 - B1_Mus1 SINE Alu 0 148 1 1 1336 314 89 0 0 chr4 98556402 98556447 -57073673 + ORR1A4 LTR MaLR 243 287 -42 1 1336 1191 49 0 0 chr4 98556456 98556599 -57073521 + B1_Mus2 SINE Alu 5 147 0 1 1336 378 0 0 0 chr4 98556601 98556643 -57073477 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1336 501 277 69 0 chr4 98556643 98556802 -57073318 + L1_Mur3 LINE L1 2183 2352 -3528 1 1336 4432 91 101 15 chr4 98557741 98558475 -57071645 - L1_Mur2 LINE L1 -1986 3891 3095 1 1336 2100 78 10 17 chr4 98558467 98558767 -57071353 + L1_Mur2 LINE L1 3911 4208 -1669 1 1336 1216 101 67 0 chr4 98560595 98560774 -57069346 + B2_Mm2 SINE B2 5 195 0 1 1336 219 167 0 0 chr4 98560774 98560816 -57069304 + GA-rich Low_complexity Low_complexity 4 45 0 1 1336 3284 43 5 2 chr4 98561062 98561455 -57068665 - MTA_Mm LTR MaLR -2 394 1 1 1336 566 309 103 60 chr4 98561574 98562059 -57068061 + L1_Mur3 LINE L1 2508 3038 -3105 1 1336 941 84 0 47 chr4 98562063 98562106 -57068014 + B1_Mus1 SINE Alu 1 43 -105 1 1336 3450 61 45 17 chr4 98562106 98562575 -57067545 - RLTR45 LTR ERVK 0 482 1 1 1336 941 84 0 47 chr4 98562575 98562680 -57067440 + B1_Mus1 SINE Alu 44 142 -6 1 1336 540 0 0 0 chr4 98562682 98562742 -57067378 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 1 1336 891 188 17 11 chr4 98562757 98562935 -57067185 - MTE2b LTR MaLR -13 366 188 1 1336 297 275 82 82 chr4 98562882 98562918 -57067202 + B4A SINE B4 65 178 -114 1 1336 749 173 0 0 chr4 98562918 98563045 -57067075 + B1_Mur3 SINE Alu 2 128 -21 1 1336 297 275 82 82 chr4 98563045 98563064 -57067056 + B4A SINE B4 179 246 -46 1 1336 511 303 26 6 chr4 98563063 98563219 -57066901 - MTE2b LTR MaLR -163 216 58 1 1336 373 267 11 0 chr4 98563226 98563316 -57066804 - MTE2b LTR MaLR -288 91 1 1 1336 245 226 16 0 chr4 98563317 98563379 -57066741 + L1_Mur3 LINE L1 4294 4356 -1524 1 1336 1258 136 55 4 chr4 98563403 98563639 -57066481 + RLTR15 LTR ERVK 1 248 -111 1 1336 926 46 76 0 chr4 98563652 98563783 -57066337 - B1_Mm SINE Alu -1 146 6 1 1336 454 222 120 0 chr4 98563784 98563892 -57066228 + RLTR15 LTR ERVK 239 359 0 1 1336 988 272 39 6 chr4 98563902 98564235 -57065885 + L1MA4A LINE L1 4396 4739 -1404 1 1336 1074 280 88 17 chr4 98565031 98565646 -57064474 + L1MA4A LINE L1 5093 5864 -439 1 1336 24 0 0 0 chr4 98566004 98566028 -57064092 + AT_rich Low_complexity Low_complexity 1 24 0 1 1337 1124 231 107 38 chr4 98566315 98566433 -57063687 + MTE2a LTR MaLR 10 150 -229 1 1337 315 0 0 0 chr4 98566433 98566468 -57063652 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 1 1337 1180 63 0 0 chr4 98566470 98566613 -57063507 - B1_Mus2 SINE Alu -4 143 1 1 1337 1124 231 107 38 chr4 98566613 98566837 -57063283 + MTE2a LTR MaLR 151 379 0 1 1337 231 197 38 101 chr4 98567184 98567263 -57062857 - RMER1C Other Other -9 1333 1260 1 1337 394 265 229 36 chr4 98567199 98567391 -57062729 - Lx8 LINE L1 -2 7471 7243 1 1337 201 39 0 0 chr4 98568255 98568281 -57061839 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1337 2906 183 37 149 chr4 98568281 98569059 -57061061 - RMER1B Other Other -13 1053 363 1 1337 28 0 0 0 chr4 98569677 98569705 -57060415 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 1140 167 23 41 chr4 98569705 98569924 -57060196 - Lx4A LINE L1 -7 7051 6837 1 1337 295 314 9 102 chr4 98570252 98570529 -57059591 - MTEa LTR MaLR -37 342 98 1 1337 361 336 38 77 chr4 98570416 98570651 -57059469 - MLT2B3 LTR ERVL -326 228 3 1 1337 1042 153 89 11 chr4 98570680 98570871 -57059249 + B3 SINE B2 5 210 -6 1 1337 944 228 14 0 chr4 98571096 98571307 -57058813 + B3 SINE B2 3 216 0 1 1337 1069 68 0 0 chr4 98571933 98572080 -57058040 + B1_Mus1 SINE Alu 2 148 0 1 1337 561 30 0 0 chr4 98572089 98572156 -57057964 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 1 1337 1177 68 0 13 chr4 98572264 98572414 -57057706 - B1_Mus1 SINE Alu 0 148 1 1 1337 963 211 58 14 chr4 98572562 98572769 -57057351 + B3 SINE B2 1 216 0 1 1337 1217 68 0 0 chr4 98572821 98572969 -57057151 + B1_Mus1 SINE Alu 1 148 0 1 1337 230 225 0 27 chr4 98572969 98572999 -57057121 + A-rich Low_complexity Low_complexity 1 29 0 1 1337 760 53 254 0 chr4 98572999 98573113 -57057007 + B1_Mm SINE Alu 5 147 0 1 1337 230 225 0 27 chr4 98573113 98573155 -57056965 + A-rich Low_complexity Low_complexity 30 71 0 1 1337 1990 133 0 22 chr4 98573166 98573223 -57056897 + Lx LINE L1 6335 6391 -263 1 1337 4926 38 5 28 chr4 98573223 98573824 -57056296 - LTRIS_Mus LTR ERV1 0 587 1 1 1337 1990 133 0 22 chr4 98573824 98574088 -57056032 + Lx LINE L1 6392 6649 -5 1 1337 189 74 0 0 chr4 98574109 98574136 -57055984 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1337 558 139 10 29 chr4 98574139 98574243 -57055877 + B1_Mus1 SINE Alu 27 128 -20 1 1337 2242 107 25 0 chr4 98574270 98574589 -57055531 + ORR1A2 LTR MaLR 1 327 0 1 1337 487 243 86 22 chr4 98574607 98574692 -57055428 - RSINE1 SINE B4 -10 155 59 1 1337 3518 20 5 0 chr4 98574692 98575086 -57055034 - MTA_Mm LTR MaLR 0 396 1 1 1337 9861 14 0 3 chr4 98575086 98576187 -57053933 - MTA_Mm-int LTR MaLR 0 1098 1 1 1337 3501 18 8 0 chr4 98576187 98576580 -57053540 - MTA_Mm LTR MaLR 0 396 1 1 1337 487 243 86 22 chr4 98576580 98576631 -57053489 - RSINE1 SINE B4 -107 58 10 1 1337 42 77 0 0 chr4 98576641 98576732 -57053388 + AT_rich Low_complexity Low_complexity 1 91 0 1 1337 877 243 82 8 chr4 98576991 98577236 -57052884 + MTD LTR MaLR 51 313 -106 1 1337 3329 95 36 6 chr4 98577321 98577849 -57052271 + RMER2 LTR ERV1 24 567 0 1 1337 1389 85 37 0 chr4 98577917 98578105 -57052015 + B2_Mm2 SINE B2 1 195 0 1 1337 1012 111 7 7 chr4 98578150 98578295 -57051825 + B1_Mus1 SINE Alu 4 148 0 1 1337 1024 179 115 14 chr4 98578373 98578673 -57051447 - ORR1C1 LTR MaLR 0 378 36 1 1337 283 103 0 0 chr4 98578728 98578767 -57051353 + RMER6C LTR ERVK 1 39 -681 1 1337 649 103 0 130 chr4 98578777 98578900 -57051220 + MT2B LTR ERVL 181 287 -314 2 1337 348 135 25 186 chr4 98578794 98578872 -57051248 + RLTR25B LTR ERVK 442 500 -528 2 1337 279 160 40 16 chr4 98578872 98578943 -57051177 + PB1D9 SINE Alu 3 75 -74 2 1337 1515 159 42 27 chr4 98578964 98579299 -57050821 + RMER6C LTR ERVK 351 690 0 1 1337 321 252 79 56 chr4 98579377 98579503 -57050617 + MLT1H2 LTR MaLR 58 186 -303 2 1337 454 255 63 18 chr4 98580433 98580621 -57049499 - B3A SINE B2 -2 214 9 2 1337 803 167 13 0 chr4 98580814 98580970 -57049150 + CT-rich Low_complexity Low_complexity 3 160 0 2 1337 785 181 8 0 chr4 98581208 98581341 -57048779 - B1_Mur2 SINE Alu -11 138 5 2 1337 760 327 60 52 chr4 98581429 98581926 -57048194 - HERV16-int LTR ERVL -2233 2763 2263 2 1337 514 230 36 7 chr4 98581982 98582122 -57047998 - MLT1A1 LTR MaLR 0 408 265 2 1337 290 226 58 35 chr4 98582183 98582270 -57047850 - MLT1A1 LTR MaLR -306 102 14 2 1337 434 0 0 57 chr4 98582330 98582400 -57047720 + (GAGAA)n Simple_repeat Simple_repeat 5 70 0 2 1337 381 330 10 0 chr4 98582401 98582498 -57047622 - PB1D10 SINE Alu -17 100 3 2 1337 258 305 151 73 chr4 98582529 98582748 -57047372 - RMER1C Other Other -27 1315 1080 2 1337 371 256 11 11 chr4 98582688 98582775 -57047345 - Lx8 LINE L1 -213 7260 7174 2 1337 1559 173 164 34 chr4 98582895 98583111 -57047009 + RMER6B LTR ERVK 1 245 -216 2 1337 1229 61 0 0 chr4 98583111 98583259 -57046861 - B1_Mus1 SINE Alu 0 148 1 2 1337 1559 173 164 34 chr4 98583259 98583450 -57046670 + RMER6B LTR ERVK 246 461 0 2 1337 259 271 122 0 chr4 98583460 98583567 -57046553 + MLT1H2 LTR MaLR 263 382 -8 2 1337 198 0 0 0 chr4 98583646 98583668 -57046452 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1337 727 62 274 0 chr4 98583762 98583875 -57046245 - B1_Mus1 SINE Alu -3 145 2 2 1337 542 204 0 0 chr4 98583954 98584052 -57046068 - B1_Mur4 SINE Alu -51 99 2 2 1337 475 337 33 0 chr4 98584685 98584866 -57045254 - HERV16-int LTR ERVL -2944 2052 1866 2 1337 299 274 62 136 chr4 98585054 98585309 -57044811 + RMER10A LTR ERVL 29 273 -169 2 1337 282 29 0 0 chr4 98585309 98585344 -57044776 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1337 1239 14 0 0 chr4 98585344 98585483 -57044637 - B1_Mus2 SINE Alu -8 139 1 2 1337 299 274 62 136 chr4 98585483 98585644 -57044476 + RMER10A LTR ERVL 274 413 -29 2 1337 855 200 81 15 chr4 98585678 98585876 -57044244 - MTD LTR MaLR -7 412 202 2 1337 195 42 0 0 chr4 98585876 98585900 -57044220 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1337 220 158 0 0 chr4 98585900 98585938 -57044182 - B1_Mur1 SINE Alu -13 136 99 2 1337 1354 211 53 32 chr4 98585994 98586339 -57043781 + MTD LTR MaLR 34 411 -8 2 1337 1324 201 43 32 chr4 98586344 98586896 -57043224 + MTD-int LTR MaLR 2 649 -609 2 1337 1211 61 0 0 chr4 98587408 98587555 -57042565 + B1_Mus1 SINE Alu 2 148 0 2 1337 330 301 125 22 chr4 98587581 98587717 -57042403 - RSINE1 SINE B4 0 165 16 2 1337 378 290 10 0 chr4 98587754 98587854 -57042266 - PB1D10 SINE Alu -11 106 6 2 1337 254 290 14 0 chr4 98587888 98587957 -57042163 - PB1D7 SINE Alu -48 72 3 2 1337 30 0 0 0 chr4 98588571 98588601 -57041519 + AT_rich Low_complexity Low_complexity 1 30 0 2 1337 189 107 0 0 chr4 98589828 98589856 -57040264 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 2 1337 246 81 0 0 chr4 98590273 98590310 -57039810 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1337 374 157 92 64 chr4 98592060 98592169 -57037951 + PB1D9 SINE Alu 1 112 -8 2 1337 393 224 254 8 chr4 98592409 98592535 -57037585 - RSINE1 SINE B4 -6 159 3 2 1337 207 186 0 0 chr4 98592600 98592643 -57037477 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 2 1337 1289 124 40 36 chr4 98592739 98592964 -57037156 + URR1A DNA MER1_type 1 226 0 2 1337 1596 42 16 0 chr4 98593415 98593606 -57036514 - B2_Mm2 SINE B2 -1 194 1 2 1337 888 116 65 0 chr4 98593759 98593897 -57036223 + B1_Mus1 SINE Alu 2 148 0 2 1337 201 217 0 0 chr4 98593897 98593911 -57036209 + A-rich Low_complexity Low_complexity 1 14 0 2 1337 1254 41 0 0 chr4 98593911 98594058 -57036062 + B1_Mm SINE Alu 1 147 0 2 1337 201 217 0 0 chr4 98594058 98594103 -57036017 + A-rich Low_complexity Low_complexity 15 59 0 2 1337 24 0 0 0 chr4 98594460 98594484 -57035636 + GC_rich Low_complexity Low_complexity 1 24 0 2 1337 350 231 205 0 chr4 98595709 98595826 -57034294 + B1_Mur1 SINE Alu 2 142 -7 2 1337 230 339 31 0 chr4 98596088 98596153 -57033967 - ID4_ SINE ID -14 69 3 2 1337 21 36 0 0 chr4 98596336 98596364 -57033756 + AT_rich Low_complexity Low_complexity 1 28 0 2 1337 456 62 0 0 chr4 98599323 98599387 -57030733 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1337 352 214 40 0 chr4 98600038 98600123 -57029997 - B1_Mus2 SINE Alu -8 112 22 2 1337 608 278 8 0 chr4 98600476 98600609 -57029511 - B1_Mur1 SINE Alu -13 136 3 2 1337 352 224 20 36 chr4 98604471 98604570 -57025550 + PB1D9 SINE Alu 2 94 -53 2 1337 273 304 10 52 chr4 98604509 98604606 -57025514 + MT2B LTR ERVL 194 286 -315 2 1337 393 315 0 27 chr4 98604591 98604741 -57025379 - Charlie1b DNA MER1_type -273 250 105 2 1337 245 137 0 89 chr4 98604990 98605046 -57025074 + T-rich Low_complexity Low_complexity 1 51 0 2 1337 1412 69 10 16 chr4 98605050 98605242 -57024878 - B2_Mm1a SINE B2 -2 191 1 2 1337 682 206 45 9 chr4 98605295 98605455 -57024665 + B3A SINE B2 4 170 -46 2 1337 455 256 135 0 chr4 98605482 98605638 -57024482 + ID_B1 SINE B4 41 217 -7 2 1337 328 125 0 18 chr4 98605668 98605725 -57024395 + B2_Mm2 SINE B2 114 169 -26 2 1337 291 51 0 0 chr4 98605725 98605739 -57024381 + (T)n Simple_repeat Simple_repeat 1 14 0 2 1337 1187 61 0 0 chr4 98605739 98605886 -57024234 - B1_Mus2 SINE Alu 0 147 1 2 1337 291 51 0 0 chr4 98605886 98605910 -57024210 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1337 1325 78 28 6 chr4 98605916 98606097 -57024023 + B2_Mm2 SINE B2 3 187 -8 2 1337 444 104 0 0 chr4 98606348 98606415 -57023705 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1337 375 141 0 0 chr4 98607248 98607312 -57022808 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1337 301 179 0 0 chr4 98608156 98608212 -57021908 - 4.5SRNA scRNA scRNA -1 93 38 2 1337 306 239 84 0 chr4 98608163 98608234 -57021886 - PB1D10 SINE Alu -29 88 12 2 1337 1207 48 0 0 chr4 98608497 98608643 -57021477 - B1_Mus2 SINE Alu 0 147 2 2 1337 271 257 43 0 chr4 98608674 98608744 -57021376 + PB1D10 SINE Alu 2 74 -43 2 1337 242 250 62 12 chr4 98608675 98608756 -57021364 + ID_B1 SINE B4 84 168 -56 2 1337 1378 75 21 11 chr4 98608954 98609144 -57020976 + B2_Mm2 SINE B2 2 193 -2 2 1337 348 88 0 0 chr4 98609630 98609687 -57020433 + (T)n Simple_repeat Simple_repeat 1 57 0 2 1337 1230 41 0 0 chr4 98609689 98609835 -57020285 - B1_Mus2 SINE Alu -1 146 1 2 1337 2442 41 0 10 chr4 98609940 98610238 -57019882 + L1Md_F3 LINE L1 6276 6570 -14 2 1337 1459 66 22 0 chr4 98610738 98610921 -57019199 - B2_Mm2 SINE B2 -6 189 3 2 1337 732 224 14 7 chr4 98610958 98611106 -57019014 - B1_Mur1 SINE Alu 0 149 1 2 1337 403 274 0 0 chr4 98612690 98612785 -57017335 - MER5A1 DNA MER1_type -3 163 69 2 1337 27 81 0 0 chr4 98614571 98614633 -57015487 + AT_rich Low_complexity Low_complexity 1 62 0 2 1337 468 329 68 29 chr4 98615526 98615787 -57014333 - L2a LINE L2 -202 3173 2911 2 1337 327 362 9 9 chr4 98616511 98616617 -57013503 - PB1D10 SINE Alu -10 107 2 2 1337 220 246 129 16 chr4 98616649 98616711 -57013409 + ID4 SINE ID 1 69 -14 2 1337 355 262 3 34 chr4 98616868 98616966 -57013154 - PB1D10 SINE Alu -21 99 2 2 1337 186 43 0 0 chr4 98617041 98617064 -57013056 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1337 491 211 0 88 chr4 98617269 98617394 -57012726 - PB1D10 SINE Alu 0 117 4 2 1337 205 29 29 29 chr4 98617911 98617946 -57012174 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1337 186 103 0 0 chr4 98621360 98621389 -57008731 + (GGA)n Simple_repeat Simple_repeat 2 30 0 2 1337 1179 68 0 0 chr4 98622268 98622415 -57007705 + B1_Mus1 SINE Alu 2 148 0 2 1337 1162 100 47 0 chr4 98623061 98623231 -57006889 + B2_Mm1t SINE B2 2 179 -14 2 1337 333 97 371 19 chr4 98623263 98623368 -57006752 + B2_Mm2 SINE B2 47 188 -7 2 1337 1381 65 27 5 chr4 98623820 98624006 -57006114 + B2_Mm1a SINE B2 2 191 -2 2 1337 1199 89 56 0 chr4 98625219 98625398 -57004722 + B2_Mm2 SINE B2 2 190 -5 2 1337 301 179 54 0 chr4 98625418 98625474 -57004646 + B3 SINE B2 11 69 -147 2 1337 21 0 0 0 chr4 98626094 98626115 -57004005 + AT_rich Low_complexity Low_complexity 1 21 0 2 1337 1590 38 0 0 chr4 98626115 98626300 -57003820 + B2_Mm1t SINE B2 1 185 -8 2 1337 246 232 35 9 chr4 98626308 98626421 -57003699 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1337 1211 77 12 6 chr4 98626771 98626940 -57003180 - B2_Mm2 SINE B2 -25 170 1 2 1337 590 234 140 17 chr4 98627098 98627276 -57002844 - B3 SINE B2 -15 201 2 2 1337 264 222 40 53 chr4 98627329 98627405 -57002715 + B3 SINE B2 129 203 -13 2 1337 218 298 0 50 chr4 98627494 98627653 -57002467 + (CA)n Simple_repeat Simple_repeat 2 152 0 2 1337 216 0 0 0 chr4 98627671 98627695 -57002425 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1337 270 0 0 0 chr4 98627887 98627917 -57002203 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1337 680 75 130 9 chr4 98628200 98628308 -57001812 - B1_Mm SINE Alu 0 147 27 2 1337 693 233 129 38 chr4 98628619 98628829 -57001291 + B4A SINE B4 56 284 -8 2 1337 265 253 93 0 chr4 98629121 98629196 -57000924 + ID4 SINE ID 2 83 0 2 1337 4369 223 61 81 chr4 98629339 98630338 -56999782 + L1_Mur3 LINE L1 445 1411 -4469 3 1337 1181 68 7 0 chr4 98630338 98630484 -56999636 + B1_Mus2 SINE Alu 1 147 0 3 1337 4369 201 34 42 chr4 98630484 98631285 -56998835 + L1_Mur3 LINE L1 1412 2220 -3660 3 1337 817 194 0 70 chr4 98631285 98631485 -56998635 - B2_Mm2 SINE B2 -9 186 1 3 1337 4369 201 34 42 chr4 98631485 98631717 -56998403 + L1_Mur3 LINE L1 2221 2442 -3438 3 1337 776 219 72 14 chr4 98631717 98631742 -56998378 + MTE2b LTR MaLR 145 170 -209 3 1337 423 0 0 0 chr4 98631742 98631789 -56998331 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1337 315 0 0 0 chr4 98631789 98631823 -56998297 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1337 776 219 72 14 chr4 98631823 98632018 -56998102 + MTE2b LTR MaLR 171 378 -1 3 1337 256 232 46 58 chr4 98633235 98633322 -56996798 + MIR SINE MIR 16 101 -161 3 1337 267 311 54 0 chr4 98633595 98633669 -56996451 + ID4_ SINE ID 3 80 -3 3 1337 273 75 75 0 chr4 98634591 98634644 -56995476 + Lx2B LINE L1 6942 6998 -2 3 1337 2890 63 39 8 chr4 98634790 98635174 -56994946 + MTA_Mm LTR MaLR 1 396 0 3 1337 467 296 42 32 chr4 98635200 98635483 -56994637 - B4A SINE B4 -6 286 1 3 1337 371 322 57 28 chr4 98635725 98635901 -56994219 + MIR SINE MIR 50 230 -32 3 1337 613 186 18 0 chr4 98636615 98636728 -56993392 - B1_Mur1 SINE Alu 0 149 35 3 1337 594 222 47 23 chr4 98638111 98638240 -56991880 - B1F SINE Alu -7 142 11 3 1337 536 312 79 29 chr4 98638377 98638654 -56991466 + B4A SINE B4 1 291 -1 3 1337 291 28 0 0 chr4 98638781 98638817 -56991303 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1337 300 272 188 47 chr4 98639327 98639497 -56990623 - B3A SINE B2 -3 195 2 3 1337 215 61 30 0 chr4 98640671 98640704 -56989416 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1337 1231 48 0 0 chr4 98640705 98640851 -56989269 - B1_Mus1 SINE Alu -2 146 1 3 1337 1241 21 7 0 chr4 98641030 98641174 -56988946 + B1_Mm SINE Alu 2 146 -1 3 1337 309 229 238 20 chr4 98641393 98641540 -56988580 + L1MB7 LINE L1 5180 5358 -788 3 1337 451 378 56 42 chr4 98641626 98642004 -56988116 + L1MB7 LINE L1 5623 6005 -179 3 1337 254 228 118 42 chr4 98642826 98642945 -56987175 - Tigger2b DNA MER2_type 0 726 599 3 1337 486 258 83 50 chr4 98642973 98643214 -56986906 - Tigger2b DNA MER2_type -252 474 226 3 1337 223 0 51 51 chr4 98643237 98643276 -56986844 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1337 1154 58 0 0 chr4 98643276 98643415 -56986705 - B1_Mus2 SINE Alu -8 139 1 3 1337 985 188 38 24 chr4 98644247 98644459 -56985661 - B3 SINE B2 -1 215 1 3 1337 1225 45 19 0 chr4 98644834 98644990 -56985130 - B2_Mm1t SINE B2 -3 190 32 3 1337 359 246 8 45 chr4 98644990 98645371 -56984749 + (TG)n Simple_repeat Simple_repeat 1 366 0 3 1337 1097 251 33 18 chr4 98645405 98645677 -56984443 - B4A SINE B4 -16 276 1 3 1337 745 284 20 25 chr4 98646050 98646249 -56983871 - B3A SINE B2 0 198 1 3 1337 1125 118 47 26 chr4 98646274 98646465 -56983655 + MTC LTR MaLR 1 195 -212 3 1337 563 82 24 0 chr4 98646465 98646550 -56983570 - Lx3_Mus LINE L1 -680 6329 6243 3 1337 4157 73 100 29 chr4 98646550 98647180 -56982940 + Lx3_Mus LINE L1 6335 7009 0 3 1337 1327 159 27 0 chr4 98647212 98647432 -56982688 + MTC LTR MaLR 196 421 0 3 1337 217 135 27 0 chr4 98647817 98647854 -56982266 + (CCG)n Simple_repeat Simple_repeat 2 39 0 3 1337 22 0 0 0 chr4 98648059 98648081 -56982039 + AT_rich Low_complexity Low_complexity 1 22 0 3 1337 1202 55 0 0 chr4 98649152 98649297 -56980823 - B1_Mus2 SINE Alu 0 147 3 3 1337 1079 148 11 11 chr4 98649330 98649508 -56980612 + B2_Mm1t SINE B2 2 179 -14 3 1337 323 40 100 0 chr4 98649558 98649608 -56980512 + B2_Mm2 SINE B2 47 101 -94 3 1337 198 0 0 0 chr4 98649629 98649651 -56980469 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3 1337 1167 83 112 0 chr4 98650925 98651094 -56979026 - B2_Mm2 SINE B2 -7 188 1 3 1337 294 29 0 0 chr4 98652150 98652185 -56977935 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1337 2329 115 65 16 chr4 98652410 98652782 -56977338 + ORR1B1 LTR MaLR 1 390 -4 3 1337 333 0 0 0 chr4 98653100 98653137 -56976983 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1337 1080 65 36 0 chr4 98653138 98653276 -56976844 - B1_Mus2 SINE Alu -4 143 1 3 1337 246 309 62 0 chr4 98653844 98653925 -56976195 + MIR SINE MIR 139 224 -38 3 1337 1025 230 14 5 chr4 98654609 98654819 -56975301 - B3 SINE B2 -4 212 1 3 1337 293 179 11 22 chr4 98655113 98655204 -56974916 + Lx4B LINE L1 6910 7054 -4 3 1337 330 336 91 8 chr4 98655246 98655378 -56974742 + ID_B1 SINE B4 81 223 -1 3 1337 327 333 19 0 chr4 98656093 98656201 -56973919 - PB1D10 SINE Alu -7 110 1 3 1337 401 235 160 0 chr4 98656775 98656894 -56973226 - B1_Mur1 SINE Alu -9 140 3 3 1337 185 159 23 0 chr4 98657267 98657311 -56972809 + CT-rich Low_complexity Low_complexity 1 45 0 3 1337 22 0 0 0 chr4 98657350 98657372 -56972748 + AT_rich Low_complexity Low_complexity 1 22 0 3 1337 248 392 20 0 chr4 98657426 98657528 -56972592 + MIR SINE MIR 21 124 -138 3 1337 186 43 0 0 chr4 98659295 98659318 -56970802 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1337 21 36 0 0 chr4 98659642 98659670 -56970450 + AT_rich Low_complexity Low_complexity 1 28 0 3 1337 197 65 0 31 chr4 98661636 98661668 -56968452 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 3 1337 477 0 0 0 chr4 98662316 98662369 -56967751 + (CCTA)n Simple_repeat Simple_repeat 3 55 0 3 1337 315 49 0 0 chr4 98662461 98662502 -56967618 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1337 663 265 119 24 chr4 98662543 98662794 -56967326 + MTE2a-int LTR MaLR 113 387 -1193 3 1337 2225 294 135 11 chr4 98662810 98663578 -56966542 + MTE2a-int LTR MaLR 540 1370 -210 3 1337 2767 57 0 0 chr4 98663578 98663929 -56966191 + L1Md_F2 LINE L1 6220 6570 -12 3 1337 980 241 25 19 chr4 98663929 98664043 -56966077 + MTE2a-int LTR MaLR 1306 1368 -2 3 1337 1006 280 60 25 chr4 98664044 98664410 -56965710 + MTE2a LTR MaLR 1 379 0 3 1337 303 288 170 0 chr4 98665088 98665241 -56964879 + B3A SINE B2 2 180 -18 3 1337 289 307 105 0 chr4 98665305 98665419 -56964701 - L2 LINE L2 -1386 2033 1908 3 1337 237 121 0 0 chr4 98665488 98665521 -56964599 + PB1D9 SINE Alu 6 38 -82 3 1337 330 26 0 0 chr4 98665628 98665667 -56964453 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1337 263 342 8 26 chr4 98665669 98665786 -56964334 - L2 LINE L2 -1652 1767 1653 3 1337 561 222 0 0 chr4 98666536 98666644 -56963476 + PB1D10 SINE Alu 10 117 0 3 1337 22 99 0 0 chr4 98667965 98668036 -56962084 + AT_rich Low_complexity Low_complexity 1 71 0 3 1337 407 258 21 11 chr4 98668508 98668602 -56961518 - B4 SINE B4 -196 96 2 3 1337 4685 53 5 0 chr4 98669227 98669811 -56960309 + L1Md_F2 LINE L1 5984 6570 -12 3 1337 1447 138 4 12 chr4 98669851 98670100 -56960020 - L1_Mus4 LINE L1 0 6636 6390 3 1337 503 203 211 17 chr4 98671513 98671693 -56958427 + B3 SINE B2 2 216 0 3 1337 969 246 14 0 chr4 98671992 98672199 -56957921 - B3 SINE B2 -3 213 4 3 1337 268 257 87 19 chr4 98672330 98672433 -56957687 + MIR SINE MIR 30 139 -123 3 1337 625 169 355 16 chr4 98672437 98672687 -56957433 + ORR1D1 LTR MaLR 6 340 -34 3 1337 21 0 0 0 chr4 98672781 98672802 -56957318 + AT_rich Low_complexity Low_complexity 1 21 0 3 1337 244 0 56 0 chr4 98672827 98672863 -56957257 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1337 1165 55 0 7 chr4 98672863 98673010 -56957110 - B1_Mus1 SINE Alu 0 148 3 3 1337 682 139 30 15 chr4 98673287 98673418 -56956702 - B1_Mus2 SINE Alu -1 146 14 3 1337 368 325 45 86 chr4 98673434 98673664 -56956456 - B4A SINE B4 -69 223 1 3 1337 245 341 81 8 chr4 98674316 98674440 -56955680 + L2c LINE L2 3252 3384 -3 3 1337 24 0 0 0 chr4 98674572 98674596 -56955524 + AT_rich Low_complexity Low_complexity 1 24 0 3 1337 368 233 11 22 chr4 98676107 98676199 -56953921 - Lx8 LINE L1 -2 7471 7381 3 1337 251 294 102 7 chr4 98676223 98676360 -56953760 + L1MDa LINE L1 63 212 -6421 3 1337 195 42 0 0 chr4 98676613 98676637 -56953483 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 3 1337 352 320 74 70 chr4 98676638 98676788 -56953332 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1337 1046 97 14 0 chr4 98676788 98676933 -56953187 - B1_Mus1 SINE Alu 0 148 2 3 1337 352 320 74 70 chr4 98676933 98677024 -56953096 - HAL1-3A_ME LINE L1 -575 2283 2197 3 1337 33 66 0 0 chr4 98677278 98677339 -56952781 + AT_rich Low_complexity Low_complexity 1 61 0 3 1337 308 282 13 0 chr4 98678555 98678633 -56951487 + ID4 SINE ID 2 80 -3 3 1337 262 24 0 67 chr4 98678633 98678678 -56951442 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 3 1337 540 0 0 0 chr4 98678852 98678912 -56951208 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1337 284 229 18 13 chr4 98678915 98678993 -56951127 - Lx8 LINE L1 -365 5935 5822 3 1337 742 256 49 22 chr4 98679149 98679333 -56950787 - B3 SINE B2 -12 204 16 3 1337 180 0 0 0 chr4 98679759 98679779 -56950341 + (CACAG)n Simple_repeat Simple_repeat 5 24 0 3 1337 1342 85 26 5 chr4 98680018 98680207 -56949913 + B2_Mm2 SINE B2 1 193 -2 3 1337 445 128 8 31 chr4 98680865 98680994 -56949126 + GA-rich Low_complexity Low_complexity 1 126 0 3 1337 1217 57 6 0 chr4 98681412 98681571 -56948549 + B2_Mm1a SINE B2 1 160 -33 3 1337 180 0 0 0 chr4 98681571 98681591 -56948529 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1337 183 301 144 63 chr4 98681761 98681935 -56948185 - L2c LINE L2 -64 3323 3136 3 1337 244 226 57 0 chr4 98682154 98682207 -56947913 - B1F SINE Alu -50 99 44 3 1337 656 311 85 27 chr4 98684866 98685160 -56944960 + MER58B DNA MER1_type 31 341 0 3 1337 749 206 229 0 chr4 98687054 98687229 -56942891 - ID_B1 SINE B4 -8 216 2 3 1337 535 264 20 34 chr4 98687873 98688022 -56942098 - B1F SINE Alu 0 149 3 3 1337 282 298 44 82 chr4 98688396 98688409 -56941711 - L2c LINE L2 -10 3377 3310 3 1337 317 283 124 0 chr4 98688409 98688522 -56941598 - MIRm SINE MIR -22 254 128 3 1337 183 277 0 0 chr4 98688919 98688966 -56941154 - L2c LINE L2 -51 3336 3290 4 1337 207 0 0 0 chr4 98689489 98689512 -56940608 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1337 278 361 28 0 chr4 98689514 98689622 -56940498 - MER5B DNA MER1_type -55 123 13 4 1337 236 259 183 61 chr4 98690289 98690404 -56939716 - MIRb SINE MIR -28 240 112 4 1337 642 278 60 14 chr4 98690665 98690880 -56939240 + B4 SINE B4 13 237 -55 4 1337 5303 139 58 32 chr4 98691081 98692045 -56938075 + Lx4B LINE L1 6070 7058 0 4 1337 326 171 14 0 chr4 98692090 98692160 -56937960 + GA-rich Low_complexity Low_complexity 2 72 0 4 1337 543 16 0 0 chr4 98692266 98692330 -56937790 + (CTA)n Simple_repeat Simple_repeat 1 64 0 4 1337 1300 92 11 5 chr4 98692330 98692516 -56937604 - B2_Mm1t SINE B2 -6 187 1 4 1337 1186 55 0 0 chr4 98692522 98692668 -56937452 - B1_Mus1 SINE Alu 0 148 3 4 1337 469 0 33 0 chr4 98693869 98693930 -56936190 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1337 330 359 15 15 chr4 98693952 98694085 -56936035 + RSINE1 SINE B4 4 136 -29 4 1337 240 280 13 0 chr4 98694192 98694267 -56935853 - ID SINE ID -145 79 4 4 1337 378 256 113 63 chr4 98694379 98694521 -56935599 + B3 SINE B2 64 212 -4 4 1337 954 160 188 0 chr4 98694804 98694985 -56935135 + B3 SINE B2 1 215 -1 4 1337 255 301 27 0 chr4 98695515 98695588 -56934532 + ID4_ SINE ID 2 76 -7 4 1337 337 328 121 9 chr4 98695781 98696012 -56934108 - MIR SINE MIR -4 258 2 4 1337 813 179 145 0 chr4 98696212 98696391 -56933729 + B3 SINE B2 2 206 -10 4 1337 358 274 107 10 chr4 98696421 98696524 -56933596 + PB1D7 SINE Alu 8 120 0 4 1337 276 336 133 23 chr4 98696550 98696678 -56933442 - MIR SINE MIR -114 148 7 4 1337 254 260 27 14 chr4 98696951 98697025 -56933095 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 4 1338 195 378 132 19 chr4 98699188 98699347 -56930773 + L2a LINE L2 2987 3163 -263 4 1338 282 115 0 0 chr4 98700191 98700243 -56929877 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 4 1338 420 240 115 8 chr4 98700411 98700541 -56929579 + B1F SINE Alu 5 148 -1 4 1338 270 330 0 82 chr4 98701665 98701787 -56928333 + PB1D10 SINE Alu 1 112 -5 4 1338 183 80 0 0 chr4 98701908 98701933 -56928187 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 4 1338 1183 55 0 0 chr4 98701935 98702081 -56928039 - B1_Mm SINE Alu 0 147 2 4 1338 29 28 0 0 chr4 98702081 98702117 -56928003 + AT_rich Low_complexity Low_complexity 1 36 0 4 1338 227 259 136 10 chr4 98702312 98702437 -56927683 + ID2 SINE ID 1 140 -12 4 1338 25 51 0 0 chr4 98702457 98702496 -56927624 + AT_rich Low_complexity Low_complexity 1 39 0 4 1338 203 135 0 103 chr4 98702551 98702609 -56927511 + A-rich Low_complexity Low_complexity 3 54 0 4 1338 227 276 52 13 chr4 98703385 98703462 -56926658 + ID4_ SINE ID 4 83 0 4 1338 229 0 83 0 chr4 98703465 98703501 -56926619 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1338 325 301 77 34 chr4 98703630 98703747 -56926373 - ID_B1 SINE B4 -7 217 96 4 1338 333 293 108 3 chr4 98703848 98703944 -56926176 + PB1D10 SINE Alu 1 104 -44 4 1338 378 0 0 0 chr4 98703951 98703993 -56926127 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1338 531 228 8 16 chr4 98704945 98705070 -56925050 + B1_Mus2 SINE Alu 3 126 -21 4 1338 207 159 45 0 chr4 98705070 98705114 -56925006 + A-rich Low_complexity Low_complexity 5 50 0 4 1338 21028 160 16 19 chr4 98705149 98706048 -56924072 - L1VL4 LINE L1 -747 5139 4225 4 1338 1212 102 10 41 chr4 98706048 98706242 -56923878 - B2_Mm2 SINE B2 -7 188 1 4 1338 21028 147 19 15 chr4 98706242 98709940 -56920180 - L1VL4 LINE L1 -1662 4224 529 4 1338 577 236 83 7 chr4 98710152 98710297 -56919823 + B3A SINE B2 26 181 -17 4 1338 715 157 130 30 chr4 98710307 98710478 -56919642 - B3 SINE B2 0 198 1 4 1338 597 246 35 108 chr4 98711267 98711582 -56918538 - B4A SINE B4 0 292 1 4 1338 272 292 87 17 chr4 98712398 98712435 -56917685 - B4A SINE B4 -84 208 86 4 1338 291 244 115 0 chr4 98712435 98712513 -56917607 - PB1D10 SINE Alu -30 87 1 4 1338 225 169 0 0 chr4 98713165 98713224 -56916896 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1338 245 286 103 35 chr4 98714039 98714155 -56915965 + Charlie4a DNA MER1_type 118 241 -267 4 1338 335 235 67 19 chr4 98714222 98714326 -56915794 + Charlie4a DNA MER1_type 353 461 -47 4 1338 2875 130 27 0 chr4 98714528 98715006 -56915114 - MusHAL1 LINE L1 -2082 630 140 4 1338 702 24 0 0 chr4 98715085 98715169 -56914951 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1338 353 338 34 47 chr4 98716133 98716282 -56913838 - RSINE1 SINE B4 -17 148 2 4 1338 627 245 31 3 chr4 98716699 98716838 -56913282 - B1_Mur2 SINE Alu -8 139 2 4 1338 264 30 0 0 chr4 98716913 98716946 -56913174 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1338 494 302 55 55 chr4 98717538 98717776 -56912344 + B4A SINE B4 41 278 -14 4 1338 267 31 0 0 chr4 98717785 98717817 -56912303 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1338 800 46 9 0 chr4 98718423 98718532 -56911588 - B1_Mus1 SINE Alu -3 145 36 4 1338 333 306 81 146 chr4 98718565 98718824 -56911296 + HAL1 LINE L1 1397 1619 -888 4 1338 299 289 32 32 chr4 98718824 98718949 -56911171 + PB1 SINE Alu 3 127 0 4 1338 333 306 81 146 chr4 98718949 98719072 -56911048 + HAL1 LINE L1 1620 1754 -753 4 1338 221 0 35 0 chr4 98719838 98719867 -56910253 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1338 1353 65 54 0 chr4 98719981 98720165 -56909955 - B2_Mm2 SINE B2 0 195 2 4 1338 22 0 0 0 chr4 98720172 98720194 -56909926 + AT_rich Low_complexity Low_complexity 1 22 0 4 1338 25 31 0 0 chr4 98721005 98721037 -56909083 + AT_rich Low_complexity Low_complexity 1 32 0 4 1338 24 67 0 0 chr4 98721903 98721948 -56908172 + AT_rich Low_complexity Low_complexity 1 45 0 4 1338 182 220 80 0 chr4 98722027 98722077 -56908043 - L4 LINE RTE -304 1725 1672 4 1338 243 314 65 47 chr4 98722281 98722388 -56907732 + ORR1A3 LTR MaLR 25 133 -193 4 1338 928 145 20 20 chr4 98722694 98722842 -56907278 + B1_Mus1 SINE Alu 1 148 0 4 1338 367 303 55 39 chr4 98722960 98722975 -56907145 + B4 SINE B4 70 86 -206 4 1338 660 176 0 44 chr4 98722975 98723088 -56907032 + B1_Mus2 SINE Alu 1 108 -39 4 1338 192 97 0 0 chr4 98724149 98724180 -56905940 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1338 748 268 9 59 chr4 98725657 98725879 -56904241 + B3 SINE B2 1 211 -5 4 1338 333 118 0 0 chr4 98725958 98726009 -56904111 + (TGG)n Simple_repeat Simple_repeat 3 53 0 4 1338 2533 105 33 11 chr4 98726549 98726915 -56903205 - Lx2 LINE L1 0 6997 6624 4 1338 244 36 0 0 chr4 98726915 98726943 -56903177 + Lx2 LINE L1 6530 6557 -440 4 1338 329 291 33 84 chr4 98726949 98727163 -56902957 - MER112 DNA MER1_type -15 246 44 4 1338 604 242 150 36 chr4 98727418 98727585 -56902535 + B3A SINE B2 9 194 -4 4 1338 539 96 0 12 chr4 98728387 98728471 -56901649 + (TCC)n Simple_repeat Simple_repeat 2 84 0 4 1338 538 259 164 33 chr4 98728565 98728932 -56901188 + L1MB8 LINE L1 2588 3002 -3144 4 1338 366 309 9 52 chr4 98728965 98729081 -56901039 + PB1D10 SINE Alu 6 116 -1 4 1338 1307 310 70 54 chr4 98729526 98729902 -56900218 + L1MB8 LINE L1 5319 5691 -487 4 1338 379 181 0 40 chr4 98729902 98729977 -56900143 + ID4_ SINE ID 3 74 -9 4 1338 1307 310 70 54 chr4 98729977 98730381 -56899739 + L1MB8 LINE L1 5692 6112 -66 4 1338 23 0 0 0 chr4 98731038 98731061 -56899059 + GC_rich Low_complexity Low_complexity 1 23 0 4 1338 22 56 0 0 chr4 98731608 98731644 -56898476 + AT_rich Low_complexity Low_complexity 1 36 0 4 1338 314 280 13 13 chr4 98731785 98731861 -56898259 - RSINE1 SINE B4 -87 78 3 4 1338 787 264 76 29 chr4 98732207 98732589 -56897531 + L1M3 LINE L1 3808 4207 -1933 4 1338 240 35 0 0 chr4 98732597 98732626 -56897494 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1338 683 202 93 0 chr4 98732626 98732755 -56897365 - B1_Mur3 SINE Alu -7 142 2 4 1338 371 246 80 87 chr4 98732883 98733021 -56897099 + B1F SINE Alu 13 149 0 4 1338 793 268 130 5 chr4 98733025 98733441 -56896679 + L1M3 LINE L1 4248 4715 -1425 4 1338 972 25 0 0 chr4 98733660 98733779 -56896341 + B1_Mm SINE Alu 29 147 0 4 1338 273 157 77 19 chr4 98733798 98733850 -56896270 + Lx7 LINE L1 7205 7259 -437 4 1338 965 189 10 10 chr4 98734316 98734509 -56895611 + B2_Mm2 SINE B2 3 195 0 4 1338 212 167 21 0 chr4 98734569 98734617 -56895503 + GA-rich Low_complexity Low_complexity 2 50 0 4 1338 45 75 0 0 chr4 98735037 98735131 -56894989 + AT_rich Low_complexity Low_complexity 1 94 0 4 1338 562 218 63 16 chr4 98735133 98735259 -56894861 - B1_Mur2 SINE Alu 0 149 18 4 1338 24 0 0 0 chr4 98735474 98735498 -56894622 + AT_rich Low_complexity Low_complexity 1 24 0 4 1338 436 288 19 58 chr4 98735617 98735772 -56894348 - RSINE1 SINE B4 -16 149 1 4 1338 291 267 0 32 chr4 98735831 98735893 -56894227 - ID4 SINE ID -8 75 16 4 1338 246 333 0 96 chr4 98735893 98735914 -56894206 - ID SINE ID -148 76 2 4 1338 377 331 132 0 chr4 98735924 98735939 -56894181 - ID_B1 SINE B4 -3 221 132 4 1338 454 274 53 0 chr4 98735939 98736052 -56894068 - B1F SINE Alu -30 119 1 4 1338 276 217 14 68 chr4 98736119 98736193 -56893927 - PB1D10 SINE Alu 0 117 48 4 1338 871 327 14 49 chr4 98736325 98736672 -56893448 + MLT2D LTR ERVL 25 359 -55 4 1338 192 77 0 0 chr4 98737081 98737107 -56893013 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1338 23 0 0 0 chr4 98737735 98737758 -56892362 + AT_rich Low_complexity Low_complexity 1 23 0 4 1338 7195 94 43 6 chr4 98737786 98738875 -56891245 - Lx LINE L1 -1 6653 5525 5 1338 485 263 50 39 chr4 98739215 98739374 -56890746 + B3A SINE B2 1 165 -30 5 1338 302 272 95 61 chr4 98739403 98739634 -56890486 + RLTR15 LTR ERVK 105 343 -16 5 1338 2063 88 42 48 chr4 98739658 98740024 -56890096 + ORR1A4 LTR MaLR 1 394 0 5 1338 241 254 0 33 chr4 98740726 98740787 -56889333 + MER20 DNA MER1_type 112 170 -49 5 1338 1135 136 55 10 chr4 98741262 98741462 -56888658 - URR1B DNA MER1_type 0 225 17 5 1338 302 191 43 29 chr4 98741585 98741655 -56888465 + ID4_ SINE ID 9 79 -4 5 1338 225 262 16 0 chr4 98741696 98741757 -56888363 + GA-rich Low_complexity Low_complexity 3 64 0 5 1338 637 302 42 18 chr4 98742122 98742405 -56887715 + L1MB8 LINE L1 5727 6016 -162 5 1338 1306 132 34 75 chr4 98742406 98742701 -56887419 + RMER10A LTR ERVL 159 441 -1 5 1338 363 311 47 44 chr4 98742719 98742874 -56887246 + MLT1B LTR MaLR 152 313 -77 5 1338 660 286 73 5 chr4 98743040 98743244 -56886876 + ID_B1 SINE B4 1 218 -6 5 1338 2200 60 147 0 chr4 98743893 98744178 -56885942 + ORR1A2 LTR MaLR 1 327 0 5 1338 440 199 123 87 chr4 98744206 98744344 -56885776 + B1_Mur1 SINE Alu 5 147 -2 5 1338 375 120 0 0 chr4 98744424 98744474 -56885646 + B2_Mm2 SINE B2 4 53 -142 5 1338 1109 207 85 38 chr4 98744707 98745108 -56885012 + RLTR20A LTR ERVK 76 551 -26 5 1338 259 289 42 62 chr4 98745154 98745250 -56884870 - PB1D10 SINE Alu -12 105 12 5 1338 32 67 0 0 chr4 98745372 98745432 -56884688 + AT_rich Low_complexity Low_complexity 1 60 0 5 1338 439 212 4 12 chr4 98745984 98746078 -56884042 - PB1D10 SINE Alu -52 97 2 5 1338 24 32 0 0 chr4 98746854 98746885 -56883235 + AT_rich Low_complexity Low_complexity 1 31 0 5 1338 820 43 0 25 chr4 98746919 98747064 -56883056 - L1Md_F3 LINE L1 0 6584 6445 5 1338 936 162 28 21 chr4 98747064 98747209 -56882911 - B1_Mur2 SINE Alu -2 147 2 5 1338 362 317 15 45 chr4 98747524 98747656 -56882464 + MIRb SINE MIR 16 143 -125 5 1338 847 200 107 5 chr4 98748143 98748339 -56881781 - B3 SINE B2 0 216 1 5 1338 305 260 26 13 chr4 98748664 98748742 -56881378 + ID_B1 SINE B4 76 154 -70 5 1338 322 221 81 0 chr4 98748675 98748781 -56881339 + B1F2 SINE Alu 5 120 0 5 1338 777 258 68 15 chr4 98749138 98749343 -56880777 - B3 SINE B2 0 216 1 5 1338 4405 121 32 7 chr4 98750542 98751264 -56878856 - RMER6A LTR ERVK -16 740 1 5 1338 25 0 0 0 chr4 98751504 98751529 -56878591 + AT_rich Low_complexity Low_complexity 1 25 0 5 1338 564 81 0 0 chr4 98751582 98751669 -56878451 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1338 304 340 21 0 chr4 98751679 98751776 -56878344 - RSINE1 SINE B4 -64 101 3 5 1338 219 176 235 0 chr4 98751780 98751831 -56878289 - ID_B1 SINE B4 -78 146 84 5 1338 426 278 56 0 chr4 98752117 98752225 -56877895 - B3A SINE B2 -81 117 4 5 1338 1015 207 59 0 chr4 98752357 98752560 -56877560 + B3 SINE B2 1 215 -1 5 1338 727 216 7 39 chr4 98752565 98752719 -56877401 + B1_Mur3 SINE Alu 1 149 0 5 1338 321 261 48 40 chr4 98752931 98753055 -56877065 + L1MEg LINE L1 1086 1210 -4874 5 1338 893 144 14 0 chr4 98753187 98753326 -56876794 + B1_Mus1 SINE Alu 3 143 -5 5 1338 413 232 70 90 chr4 98753194 98753350 -56876770 + B4A SINE B4 94 246 -46 5 1338 287 177 10 30 chr4 98753361 98753460 -56876660 + GA-rich Low_complexity Low_complexity 1 97 0 5 1338 468 35 0 0 chr4 98753469 98753527 -56876593 + (TCC)n Simple_repeat Simple_repeat 1 58 0 5 1338 529 262 25 0 chr4 98753641 98753763 -56876357 + MTEa LTR MaLR 244 368 -11 5 1338 242 172 65 65 chr4 98754049 98754111 -56876009 + B4A SINE B4 85 146 -146 5 1338 309 188 69 55 chr4 98754059 98754183 -56875937 + PB1D7 SINE Alu 6 125 -2 5 1338 250 354 183 15 chr4 98754991 98755329 -56874791 - L2 LINE L2 -2131 1288 894 5 1338 391 145 159 0 chr4 98756516 98756585 -56873535 - B1_Mur1 SINE Alu -5 144 65 5 1338 33 25 0 0 chr4 98757338 98757378 -56872742 + AT_rich Low_complexity Low_complexity 1 40 0 5 1338 681 262 137 11 chr4 98758043 98758321 -56871799 + L1MC2 LINE L1 5712 6024 -320 5 1338 893 190 128 14 chr4 98758321 98758601 -56871519 - MTD LTR MaLR -14 405 5 5 1338 243 262 257 20 chr4 98758618 98758783 -56871337 + L1MC2 LINE L1 6029 6232 -112 5 1338 350 0 44 0 chr4 98758915 98758960 -56871160 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 5 1338 405 220 25 66 chr4 98759401 98759523 -56870597 - B1_Mur1 SINE Alu 0 120 5 5 1338 244 327 77 0 chr4 98759448 98759552 -56870568 - B4A SINE B4 -126 166 55 5 1338 288 269 98 36 chr4 98760082 98760194 -56869926 - PB1D7 SINE Alu -1 119 1 5 1338 1833 154 61 64 chr4 98761875 98762250 -56867870 + ORR1D1 LTR MaLR 1 374 0 5 1338 8510 28 0 0 chr4 98762508 98764139 -56865981 - L1Md_T LINE L1 0 6582 4953 5 1338 501 284 0 85 chr4 98764318 98764495 -56865625 + RSINE1 SINE B4 4 165 0 5 1338 267 307 0 57 chr4 98764500 98764676 -56865444 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 1338 365 130 100 53 chr4 98764595 98764765 -56865355 + (CATG)n Simple_repeat Simple_repeat 3 180 0 5 1338 344 275 11 43 chr4 98764755 98764941 -56865179 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1338 237 222 0 0 chr4 98765154 98765199 -56864921 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1338 870 314 57 8 chr4 98765238 98765501 -56864619 - B4 SINE B4 -16 276 1 5 1338 252 335 70 93 chr4 98765509 98765766 -56864354 - ORR1D2 LTR MaLR -66 304 54 5 1338 292 280 89 10 chr4 98765807 98765908 -56864212 - MLT2B3 LTR ERVL -445 109 1 5 1338 21 0 0 0 chr4 98766036 98766057 -56864063 + AT_rich Low_complexity Low_complexity 1 21 0 5 1338 1753 36 0 0 chr4 98766065 98766258 -56863862 + B2_Mm1t SINE B2 1 193 0 5 1338 267 365 48 70 chr4 98766516 98766787 -56863333 + LTR86A1 LTR ERVL 118 382 -131 5 1338 329 311 37 15 chr4 98766748 98766882 -56863238 + ORR1D2 LTR MaLR 7 143 -227 5 1338 242 269 202 11 chr4 98767036 98767130 -56862990 + LTR86A1 LTR ERVL 350 461 -32 5 1338 1040 222 9 50 chr4 98767143 98767361 -56862759 + B3 SINE B2 1 209 -7 5 1338 1301 47 0 0 chr4 98768187 98768335 -56861785 + B1_Mus1 SINE Alu 1 148 0 5 1338 1391 61 0 6 chr4 98768354 98768536 -56861584 + B2_Mm2 SINE B2 8 188 -7 5 1338 318 264 42 0 chr4 98769244 98769316 -56860804 + B1F SINE Alu 24 98 -51 5 1338 1131 95 0 0 chr4 98771552 98771699 -56858421 + B2_Mm2 SINE B2 1 147 -48 5 1338 7883 57 2 1 chr4 98771750 98772710 -56857410 - L1_Mus1 LINE L1 0 6567 5607 5 1338 354 174 163 0 chr4 98772811 98772897 -56857223 - B1F SINE Alu -5 144 45 5 1338 511 244 43 0 chr4 98772970 98773085 -56857035 + PB1D9 SINE Alu 1 120 0 5 1338 272 279 148 37 chr4 98773107 98773215 -56856905 + L1MD LINE L1 4043 4162 -1984 5 1338 438 255 121 32 chr4 98773835 98774053 -56856067 + B4A SINE B4 70 288 -4 5 1338 222 37 0 0 chr4 98774063 98774090 -56856030 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1338 555 273 106 14 chr4 98774204 98774479 -56855641 + L1MB5 LINE L1 4148 4447 -1699 5 1338 771 232 195 0 chr4 98774560 98774745 -56855375 + ID_B1 SINE B4 1 221 -3 5 1338 486 254 132 19 chr4 98774787 98774992 -56855128 + Lx8 LINE L1 6943 7170 -303 5 1338 366 80 0 0 chr4 98775187 98775237 -56854883 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1338 476 266 75 79 chr4 98775251 98775569 -56854551 + L1MB5 LINE L1 4470 4786 -1360 5 1338 273 245 41 9 chr4 98775777 98775877 -56854243 - B4 SINE B4 -61 104 3 5 1338 486 0 0 0 chr4 98775967 98776021 -56854099 + (TTG)n Simple_repeat Simple_repeat 1 54 0 5 1338 1047 178 29 10 chr4 98776021 98776225 -56853895 + B3 SINE B2 9 216 0 5 1338 1095 200 77 0 chr4 98776245 98776440 -56853680 + B3 SINE B2 1 210 -6 5 1338 721 288 69 25 chr4 98776463 98776889 -56853231 + L1MB5 LINE L1 5655 6099 -79 5 1338 652 132 173 68 chr4 98776889 98777051 -56853069 - B2_Mm2 SINE B2 -12 183 5 5 1338 715 292 91 33 chr4 98777051 98777106 -56853014 + L1MB5 LINE L1 6100 6163 -15 5 1338 430 331 38 25 chr4 98777106 98777264 -56852856 + RSINE1 SINE B4 3 162 -3 5 1338 947 154 376 73 chr4 98777597 98777884 -56852236 + ORR1D1 LTR MaLR 1 374 0 5 1338 309 212 0 43 chr4 98778107 98778176 -56851944 + B4A SINE B4 189 254 -38 5 1338 1029 233 109 15 chr4 98778247 98778513 -56851607 - B4 SINE B4 -1 291 1 5 1338 239 336 47 47 chr4 98778605 98778733 -56851387 + MLT1K LTR MaLR 101 228 -367 5 1338 421 275 92 12 chr4 98779186 98779359 -56850761 + LTR16D LTR ERVL 463 649 -2 5 1338 215 61 30 0 chr4 98779370 98779403 -56850717 + (GAGAA)n Simple_repeat Simple_repeat 4 37 0 5 1338 976 129 147 0 chr4 98779421 98779591 -56850529 + B2_Mm2 SINE B2 1 195 0 5 1338 194 136 23 0 chr4 98780054 98780098 -56850022 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 5 1338 280 249 238 35 chr4 98780834 98781007 -56849113 + ID_B1 SINE B4 15 222 -2 5 1338 337 328 94 18 chr4 98781008 98781321 -56848799 + L1M5 LINE L1 5094 5432 -741 5 1338 954 128 17 6 chr4 98781566 98781739 -56848381 + URR1A DNA MER1_type 52 226 0 5 1338 383 261 72 39 chr4 98781739 98781773 -56848347 - CYRA11_Mm Unknown Y-chromosome -273 344 131 5 1338 508 252 99 26 chr4 98782168 98782319 -56847801 + RSINE1 SINE B4 2 163 -2 5 1338 277 188 74 12 chr4 98783252 98783333 -56846787 + PB1D7 SINE Alu 30 115 -5 6 1338 333 47 0 0 chr4 98783529 98783572 -56846548 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 6 1338 191 36 36 0 chr4 98783789 98783817 -56846303 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1338 1002 72 64 7 chr4 98784057 98784197 -56845923 + B1_Mus1 SINE Alu 1 148 0 6 1338 783 129 36 166 chr4 98784281 98784504 -56845616 - B2_Mm2 SINE B2 0 195 2 6 1338 446 297 130 14 chr4 98785230 98785445 -56844675 - MIR SINE MIR -3 259 20 6 1338 347 278 67 18 chr4 98786281 98786446 -56843674 - MIR SINE MIR -3 259 87 6 1338 24 32 0 0 chr4 98787381 98787412 -56842708 + GC_rich Low_complexity Low_complexity 1 31 0 6 1338 475 235 102 14 chr4 98788052 98788232 -56841888 - MIRb SINE MIR -49 219 29 6 1338 438 69 0 0 chr4 98789848 98789906 -56840214 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 6 1338 1069 100 129 0 chr4 98789913 98790083 -56840037 - B2_Mm1t SINE B2 0 193 2 6 1338 802 219 99 97 chr4 98791371 98791706 -56838414 - RMER12 LTR ERVK -19 1553 943 6 1338 363 268 18 128 chr4 98791715 98791942 -56838178 - RLTR22_Mus LTR ERVK -1006 802 601 6 1338 1430 76 16 0 chr4 98791946 98792131 -56837989 - B2_Mm2 SINE B2 -6 189 2 6 1338 1113 265 74 57 chr4 98792327 98792784 -56837336 - RMER13A LTR ERVK -394 466 2 6 1338 1170 218 63 34 chr4 98792802 98793297 -56836823 - RMER12 LTR ERVK -1265 583 84 6 1338 571 254 79 18 chr4 98793297 98793525 -56836595 - MLT2B4 LTR ERVL -314 242 1 6 1338 411 217 16 122 chr4 98793617 98793760 -56836360 + L1M2 LINE L1 5564 5690 -607 6 1338 902 237 68 54 chr4 98794022 98794497 -56835623 + BGLII_B LTR ERVK 1 480 -212 6 1338 33 25 0 0 chr4 98796095 98796135 -56833985 + AT_rich Low_complexity Low_complexity 1 40 0 6 1338 1290 64 11 44 chr4 98796135 98796315 -56833805 - B2_Mm1a SINE B2 -18 175 2 6 1338 442 244 0 0 chr4 98797366 98797456 -56832664 + RSINE1 SINE B4 4 93 -72 6 1338 498 108 0 0 chr4 98797471 98797545 -56832575 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1338 26 0 0 0 chr4 98797545 98797571 -56832549 + AT_rich Low_complexity Low_complexity 1 26 0 6 1338 378 317 6 80 chr4 98797571 98797746 -56832374 + RSINE1 SINE B4 4 165 0 6 1338 255 363 24 0 chr4 98797864 98797988 -56832132 - MLT1E1A LTR MaLR -529 151 25 6 1338 1105 199 0 18 chr4 98798383 98798603 -56831517 - B3 SINE B2 0 216 1 6 1338 451 198 116 9 chr4 98798920 98799032 -56831088 - RSINE1 SINE B4 -40 125 2 6 1338 240 322 83 82 chr4 98799186 98799461 -56830659 - L2b LINE L2 -174 3213 2933 6 1338 400 309 53 41 chr4 98799903 98800072 -56830048 - MLT1J LTR MaLR -339 173 3 6 1338 252 0 0 0 chr4 98800402 98800430 -56829690 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1338 396 209 35 11 chr4 98800660 98800747 -56829373 + RSINE1 SINE B4 13 101 -64 6 1338 426 20 0 0 chr4 98800784 98800835 -56829285 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1338 348 24 0 0 chr4 98800835 98800876 -56829244 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 6 1338 413 260 90 0 chr4 98800902 98801002 -56829118 + PB1D10 SINE Alu 1 109 -8 6 1338 180 0 0 0 chr4 98801022 98801042 -56829078 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1338 476 179 74 0 chr4 98801911 98802006 -56828114 - PB1D9 SINE Alu -9 111 10 6 1338 22 0 0 0 chr4 98802608 98802630 -56827490 + AT_rich Low_complexity Low_complexity 1 22 0 6 1338 760 246 14 55 chr4 98802635 98802854 -56827266 - ID_B1 SINE B4 -13 211 2 6 1338 221 0 0 33 chr4 98803383 98803413 -56826707 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1338 910 122 6 57 chr4 98803467 98803624 -56826496 + B1_Mur3 SINE Alu 1 149 0 6 1338 1094 95 0 13 chr4 98803634 98803783 -56826337 + B1_Mus1 SINE Alu 2 148 0 6 1338 635 236 43 0 chr4 98803802 98803942 -56826178 + RSINE1 SINE B4 3 148 -17 6 1338 589 213 218 28 chr4 98803978 98804100 -56826020 + B3 SINE B2 3 124 -92 6 1338 550 0 14 14 chr4 98804100 98804171 -56825949 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1338 589 213 218 28 chr4 98804171 98804227 -56825893 + B3 SINE B2 125 215 -1 6 1338 329 282 152 43 chr4 98804612 98804823 -56825297 + LTR41 LTR ERVL 20 253 -515 6 1338 811 297 42 82 chr4 98804856 98805066 -56825054 + LTR41 LTR ERVL 385 592 -176 6 1338 249 33 0 0 chr4 98805066 98805096 -56825024 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1338 491 98 292 38 chr4 98805096 98805202 -56824918 - B1_Mus2 SINE Alu -10 137 5 6 1338 811 297 42 82 chr4 98805202 98805264 -56824856 + LTR41 LTR ERVL 593 648 -120 6 1338 752 223 105 11 chr4 98805264 98805454 -56824666 - B3 SINE B2 -4 212 5 6 1338 811 297 42 82 chr4 98805454 98805579 -56824541 + LTR41 LTR ERVL 649 767 -1 6 1338 522 173 61 54 chr4 98805918 98806065 -56824055 + RMER15 LTR ERVL 1 148 -427 6 1338 682 233 30 45 chr4 98806068 98806270 -56823850 + RMER15 LTR ERVL 274 472 -103 6 1338 1190 50 0 0 chr4 98806658 98806799 -56823321 + B1_Mus1 SINE Alu 2 142 -6 6 1338 492 79 2 106 chr4 98806842 98807240 -56822880 + GA-rich Low_complexity Low_complexity 1 357 0 6 1338 254 292 77 13 chr4 98807710 98807866 -56822254 + MER33 DNA MER1_type 136 301 -23 6 1338 407 271 66 33 chr4 98807895 98808017 -56822103 - RSINE1 SINE B4 -11 154 29 6 1338 396 351 7 0 chr4 98808084 98808232 -56821888 - RSINE1 SINE B4 -13 152 4 6 1338 447 248 147 0 chr4 98808243 98808372 -56821748 - ID_B1 SINE B4 0 224 77 6 1338 1106 196 0 25 chr4 98808527 98808731 -56821389 + B3 SINE B2 1 199 -17 6 1338 312 27 0 0 chr4 98808733 98808770 -56821350 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 6 1338 720 163 96 0 chr4 98808832 98808967 -56821153 + B1_Mur4 SINE Alu 2 149 -1 6 1338 210 98 18 89 chr4 98808967 98809023 -56821097 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 1338 270 255 43 0 chr4 98809048 98809142 -56820978 + RMER1B Other Other 57 154 -912 6 1338 2817 207 50 60 chr4 98809336 98810020 -56820100 + RMER1C Other Other 602 1278 -64 6 1338 227 278 0 0 chr4 98810537 98810591 -56819529 + Lx9 LINE L1 7358 7411 -233 6 1338 771 175 32 0 chr4 98810777 98810903 -56819217 + B1_Mus2 SINE Alu 3 132 -15 6 1338 2110 145 48 61 chr4 98810903 98811315 -56818805 + MTC LTR MaLR 1 407 -14 6 1338 180 0 0 0 chr4 98811321 98811341 -56818779 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1338 517 306 44 10 chr4 98811470 98811665 -56818455 + B3A SINE B2 15 216 0 6 1338 229 254 31 102 chr4 98812181 98812308 -56817812 + MTEa LTR MaLR 249 366 -13 6 1338 238 316 101 56 chr4 98812318 98812496 -56817624 - LTR79 LTR ERVL -20 507 322 6 1338 1102 203 14 14 chr4 98813497 98813712 -56816408 - B3 SINE B2 0 216 2 6 1338 498 345 33 14 chr4 98814317 98814529 -56815591 + L1M3de LINE L1 927 1142 -5511 6 1338 954 229 23 49 chr4 98814529 98814795 -56815325 + RMER10B LTR ERVL 137 395 -3 6 1338 3670 132 99 87 chr4 98814804 98815750 -56814370 + RMER17B LTR ERVK 1 958 0 6 1338 357 174 14 28 chr4 98815750 98815818 -56814302 + PB1D9 SINE Alu 54 120 0 6 1338 423 0 0 0 chr4 98815820 98815867 -56814253 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1338 251 87 43 0 chr4 98815867 98815913 -56814207 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 6 1338 731 197 42 7 chr4 98816131 98816274 -56813846 + B1_Mur1 SINE Alu 2 149 0 6 1338 1248 271 35 19 chr4 98816842 98817215 -56812905 - MTEb LTR MaLR 0 379 1 6 1338 1306 282 42 3 chr4 98817217 98817597 -56812523 - MTEb-int LTR MaLR -2 1578 1184 6 1338 709 179 94 47 chr4 98817750 98817920 -56812200 + B3 SINE B2 39 216 0 6 1338 508 320 72 30 chr4 98817923 98818158 -56811962 - RMER15-int LTR ERVL -4065 934 690 6 1338 363 162 0 0 chr4 98818474 98818573 -56811547 + GA-rich Low_complexity Low_complexity 82 180 0 6 1338 333 0 0 0 chr4 98819588 98819625 -56810495 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1338 1188 61 0 13 chr4 98819625 98819763 -56810357 - B1_Mm SINE Alu -9 138 1 6 1338 1011 242 5 9 chr4 98819893 98820110 -56810010 + B3 SINE B2 1 216 0 6 1338 502 293 6 102 chr4 98820130 98820297 -56809823 - B3A SINE B2 -47 151 1 6 1338 375 294 127 12 chr4 98820336 98820501 -56809619 + MIR SINE MIR 34 217 -45 6 1338 260 314 110 21 chr4 98820567 98820747 -56809373 - L2c LINE L2 -196 3179 2990 6 1338 1605 255 62 19 chr4 98821569 98822081 -56808039 - RMER5 LTR ERV1 0 534 1 6 1338 221 333 11 11 chr4 98822384 98822472 -56807648 + L2c LINE L2 2910 2997 -390 6 1338 21 0 0 0 chr4 98822576 98822597 -56807523 + GC_rich Low_complexity Low_complexity 1 21 0 6 1338 412 318 26 82 chr4 98822639 98822872 -56807248 + B4 SINE B4 1 220 -72 6 1338 665 216 50 0 chr4 98822882 98823021 -56807099 + B1_Mur1 SINE Alu 4 149 0 6 1338 38 0 0 0 chr4 98823021 98823059 -56807061 + AT_rich Low_complexity Low_complexity 1 38 0 6 1338 516 126 32 105 chr4 98823085 98823209 -56806911 + B1_Mur3 SINE Alu 35 149 0 6 1338 455 304 65 0 chr4 98823227 98823365 -56806755 + RSINE1 SINE B4 10 156 -9 6 1338 213 284 53 0 chr4 98823507 98823602 -56806518 + L2c LINE L2 3207 3306 -120 6 1338 581 289 9 51 chr4 98823683 98823898 -56806222 - ORR1D2 LTR MaLR -1 369 164 6 1338 387 0 0 0 chr4 98823898 98823941 -56806179 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1338 234 62 0 0 chr4 98824116 98824148 -56805972 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 6 1338 1070 187 11 62 chr4 98824174 98824448 -56805672 - RLTR15 LTR ERVK -17 342 83 6 1338 375 45 32 64 chr4 98824455 98824549 -56805571 + (TTTTTG)n Simple_repeat Simple_repeat 4 94 0 6 1338 1132 82 0 7 chr4 98824549 98824697 -56805423 - B1_Mus1 SINE Alu 0 148 2 6 1338 439 141 42 42 chr4 98824698 98824794 -56805326 - RLTR15 LTR ERVK -263 96 1 6 1338 681 248 39 13 chr4 98824918 98825073 -56805047 + B3 SINE B2 52 210 -6 6 1338 324 317 41 8 chr4 98825199 98825320 -56804800 + MLT1F2 LTR MaLR 18 142 -418 7 1338 258 379 53 97 chr4 98825383 98825722 -56804398 + MLT1F2 LTR MaLR 320 643 -11 7 1338 540 192 19 0 chr4 98825738 98825842 -56804278 + RMER5 LTR ERV1 13 118 -416 7 1338 984 170 0 6 chr4 98825846 98826012 -56804108 + RMER5 LTR ERV1 70 234 -300 7 1338 432 0 0 0 chr4 98826369 98826417 -56803703 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1338 243 0 0 0 chr4 98826668 98826695 -56803425 + (TCC)n Simple_repeat Simple_repeat 2 28 0 7 1338 1054 89 7 14 chr4 98826704 98826852 -56803268 - B1_Mus1 SINE Alu 0 148 2 7 1338 184 120 40 0 chr4 98827670 98827720 -56802400 + A-rich Low_complexity Low_complexity 2 53 0 7 1339 303 172 0 17 chr4 98828700 98828759 -56801361 + RMER10A LTR ERVL 6 63 -379 7 1339 1678 158 21 69 chr4 98828769 98829190 -56800930 + RMER10A LTR ERVL 42 442 0 7 1339 232 186 0 0 chr4 98829260 98829303 -56800817 + MER113A DNA MER1_type 141 183 -131 7 1339 315 0 0 0 chr4 98830227 98830262 -56799858 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1339 219 36 0 0 chr4 98830476 98830504 -56799616 + (CAG)n Simple_repeat Simple_repeat 1 28 0 7 1339 216 0 0 0 chr4 98830662 98830686 -56799434 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1339 1191 69 0 0 chr4 98830687 98830832 -56799288 - B1_Mus1 SINE Alu -3 145 1 7 1339 1374 68 0 17 chr4 98830832 98831011 -56799109 - B2_Mm2 SINE B2 -18 177 2 7 1339 871 183 0 162 chr4 98831057 98831243 -56798877 + B3 SINE B2 9 162 -54 7 1339 1482 167 102 29 chr4 98831243 98831625 -56798495 + RMER17C LTR ERVK 1 410 0 7 1339 871 183 0 162 chr4 98831625 98831673 -56798447 + B3 SINE B2 163 205 -11 7 1339 497 297 140 4 chr4 98831720 98831984 -56798136 - MER63C DNA AcHobo -85 845 546 7 1339 1151 77 0 8 chr4 98832059 98832298 -56797822 + (CA)n Simple_repeat Simple_repeat 1 236 0 7 1339 1028 218 0 14 chr4 98832349 98832572 -56797548 - RLTR42 LTR ERVK -19 220 1 7 1339 434 277 25 43 chr4 98832607 98832769 -56797351 - B3 SINE B2 -2 214 56 7 1339 267 291 8 64 chr4 98833053 98833178 -56796942 - RMER4B LTR ERVK -18 567 450 7 1339 822 174 131 22 chr4 98833882 98834124 -56795996 - RMER4B LTR ERVK -206 260 3 7 1339 212 71 0 0 chr4 98834235 98834263 -56795857 - B3 SINE B2 -177 39 12 7 1339 215 300 0 0 chr4 98834377 98834427 -56795693 + polypyrimidine Low_complexity Low_complexity 1 50 0 7 1339 410 219 114 0 chr4 98834478 98834583 -56795537 - PB1 SINE Alu -2 125 9 7 1339 1369 91 5 5 chr4 98834721 98834909 -56795211 + B2_Mm2 SINE B2 2 189 -6 7 1339 1174 95 0 6 chr4 98834909 98835079 -56795041 - B2_Mm2 SINE B2 -25 170 2 7 1339 331 249 109 75 chr4 98835134 98835308 -56794812 - MER63C DNA AcHobo -742 188 9 7 1339 2963 133 29 22 chr4 98835454 98835945 -56794175 + RLTR19A LTR ERVK 1 494 -2 7 1339 405 222 0 0 chr4 98836003 98836084 -56794036 + B3 SINE B2 129 209 -7 7 1339 21 0 0 0 chr4 98836236 98836257 -56793863 + AT_rich Low_complexity Low_complexity 1 21 0 7 1339 1141 68 7 0 chr4 98836452 98836599 -56793521 + B1_Mus1 SINE Alu 1 148 0 7 1339 203 61 30 0 chr4 98836732 98836765 -56793355 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1339 555 16 0 0 chr4 98837230 98837294 -56792826 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 1339 299 141 75 25 chr4 98837416 98837430 -56792690 + MTC-int LTR MaLR 1155 1168 -795 7 1339 3347 94 107 199 chr4 98837430 98837864 -56792256 + RMER6A LTR ERVK 1 336 -420 7 1339 1292 72 0 11 chr4 98837864 98838046 -56792074 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1339 3347 94 107 199 chr4 98838046 98838444 -56791676 + RMER6A LTR ERVK 337 756 0 7 1339 1191 268 89 53 chr4 98838444 98839011 -56791109 + MTC-int LTR MaLR 624 1237 -726 7 1339 1089 228 40 57 chr4 98839229 98839710 -56790410 + RLTR19-int LTR ERVK 1870 2581 -3556 7 1339 265 250 18 91 chr4 98839843 98839953 -56790167 + RLTR19-int LTR ERVK 3189 3290 -2847 7 1339 1808 190 68 84 chr4 98839982 98840192 -56789928 + RLTR19-int LTR ERVK 3426 3635 -2502 7 1339 2324 90 19 0 chr4 98840192 98840515 -56789605 + ORR1A4 LTR MaLR 1 329 0 7 1339 1808 204 73 98 chr4 98840515 98840975 -56789145 + RLTR19-int LTR ERVK 3636 3962 -2175 7 1339 940 204 44 122 chr4 98840999 98841295 -56788825 + RLTR19-int LTR ERVK 4037 4309 -1828 7 1339 670 180 25 0 chr4 98841448 98841570 -56788550 + B1_Mus2 SINE Alu 1 125 -22 7 1339 3117 66 10 0 chr4 98841621 98842017 -56788103 + MTB LTR MaLR 1 400 0 7 1339 2194 86 13 0 chr4 98842133 98842448 -56787672 - ORR1A2 LTR MaLR -8 319 1 7 1339 685 203 21 14 chr4 98843119 98843259 -56786861 + B1_Mus1 SINE Alu 2 142 -6 7 1339 1266 94 33 11 chr4 98843261 98843443 -56786677 - B2_Mm2 SINE B2 -9 186 1 7 1339 226 253 0 39 chr4 98844252 98844308 -56785812 + T-rich Low_complexity Low_complexity 22 75 0 7 1339 1183 55 0 7 chr4 98844308 98844456 -56785664 - B1_Mus1 SINE Alu 0 148 2 7 1339 226 253 0 39 chr4 98844456 98844477 -56785643 + T-rich Low_complexity Low_complexity 1 21 0 7 1339 428 293 69 15 chr4 98844495 98844725 -56785395 - L1MA6 LINE L1 0 6297 6060 7 1339 554 254 8 23 chr4 98844781 98844914 -56785206 - B1_Mur1 SINE Alu -15 134 4 7 1339 511 270 46 46 chr4 98844944 98845138 -56784982 - B3A SINE B2 0 198 5 7 1339 759 292 10 0 chr4 98845287 98845496 -56784624 + B3 SINE B2 1 211 -5 7 1339 743 31 10 0 chr4 98846083 98846181 -56783939 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1339 409 294 226 16 chr4 98846757 98847075 -56783045 - Lx8 LINE L1 -9 7464 7080 7 1339 229 364 189 15 chr4 98848907 98849108 -56781012 + LTR16A LTR ERVL 54 289 -162 7 1339 238 139 0 44 chr4 98849115 98849160 -56780960 - RLTR17 LTR ERVK 0 692 650 7 1339 324 0 0 0 chr4 98849163 98849199 -56780921 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1339 438 20 0 0 chr4 98849899 98849950 -56780170 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1339 684 256 79 15 chr4 98850077 98850279 -56779841 - B3 SINE B2 0 216 2 7 1339 376 252 34 67 chr4 98850311 98850460 -56779660 - B1F1 SINE Alu 0 149 6 7 1339 243 0 0 0 chr4 98850524 98850551 -56779569 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1339 1086 81 0 0 chr4 98850558 98850706 -56779414 - B2_Mm2 SINE B2 -46 149 2 7 1339 910 292 46 32 chr4 98850708 98851207 -56778913 - L1M2 LINE L1 -499 5801 5296 7 1339 2238 153 11 3 chr4 98851263 98851636 -56778484 - RLTR30 LTR ERV1 0 379 4 7 1339 459 269 57 0 chr4 98852092 98852233 -56777887 + ID_B1 SINE B4 2 150 -74 7 1339 191 36 36 0 chr4 98852239 98852267 -56777853 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 7 1339 406 205 0 0 chr4 98852566 98852644 -56777476 + B3 SINE B2 139 216 0 7 1339 799 185 20 20 chr4 98852662 98852811 -56777309 - B1_Mur3 SINE Alu 0 149 1 7 1339 31 0 0 0 chr4 98852919 98852950 -56777170 + AT_rich Low_complexity Low_complexity 1 31 0 7 1339 692 293 65 111 chr4 98853227 98853749 -56776371 - MLT1F2 LTR MaLR -5 555 58 7 1339 227 357 12 0 chr4 98853819 98853903 -56776217 - Zaphod DNA Tip100 -3502 529 445 7 1339 1531 53 5 0 chr4 98854006 98854195 -56775925 + B2_Mm1a SINE B2 1 190 -3 7 1339 388 281 62 87 chr4 98854253 98854541 -56775579 - L1M2 LINE L1 -1893 4250 3970 7 1339 435 295 136 70 chr4 98854648 98854921 -56775199 - B4A SINE B4 0 292 2 7 1339 1023 287 79 5 chr4 98854927 98855344 -56774776 - L1M2 LINE L1 -2177 3966 3519 7 1339 260 314 18 65 chr4 98855344 98855514 -56774606 + RSINE1 SINE B4 3 164 -1 7 1339 635 268 177 43 chr4 98855643 98855874 -56774246 - L1M2 LINE L1 -2860 3283 3033 7 1339 288 216 60 43 chr4 98855874 98855990 -56774130 - PB1D7 SINE Alu -2 118 1 7 1339 635 268 177 43 chr4 98855990 98856316 -56773804 - L1M2 LINE L1 -3111 3032 2651 7 1339 574 285 169 24 chr4 98856351 98856400 -56773720 - B4A SINE B4 0 292 225 7 1339 243 0 0 0 chr4 98856400 98856427 -56773693 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7 1339 574 285 169 24 chr4 98856427 98856632 -56773488 - B4A SINE B4 -68 224 3 7 1339 655 229 0 0 chr4 98856766 98856884 -56773236 + PB1D9 SINE Alu 1 118 -2 7 1339 290 299 72 29 chr4 98856907 98856931 -56773189 + B4 SINE B4 65 94 -198 7 1339 350 260 30 75 chr4 98856931 98857064 -56773056 + B1F1 SINE Alu 1 127 -22 7 1339 327 206 0 0 chr4 98857129 98857197 -56772923 + ID_B1 SINE B4 114 181 -43 7 1339 229 27 53 26 chr4 98857200 98857238 -56772882 + ORR1A4 LTR MaLR 1 39 -290 7 1339 1571 178 126 26 chr4 98857498 98857948 -56772172 - BGLII_B LTR ERVK -5 436 1 7 1339 1085 151 23 42 chr4 98857948 98858163 -56771957 + ORR1A4 LTR MaLR 93 303 -26 7 1339 1755 234 144 2 chr4 98859339 98859797 -56770323 + MT2A LTR ERVL 1 523 -10 7 1339 315 274 46 19 chr4 98860065 98860173 -56769947 + PB1D10 SINE Alu 3 113 -4 7 1339 23 0 0 0 chr4 98860812 98860835 -56769285 + GC_rich Low_complexity Low_complexity 1 23 0 7 1339 773 246 56 0 chr4 98862051 98862246 -56767874 - B3 SINE B2 -8 208 3 7 1339 207 0 0 0 chr4 98862458 98862481 -56767639 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1339 237 321 49 0 chr4 98862487 98862568 -56767552 - PB1D10 SINE Alu -20 97 13 7 1339 687 175 22 14 chr4 98862700 98862839 -56767281 + B1F SINE Alu 10 149 0 7 1339 195 69 0 0 chr4 98862856 98862885 -56767235 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 7 1339 483 18 0 0 chr4 98863212 98863268 -56766852 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 7 1339 1165 76 0 0 chr4 98863268 98863425 -56766695 - B2_Mm2 SINE B2 -38 157 1 7 1339 202 106 43 0 chr4 98863612 98863659 -56766461 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 7 1339 2018 159 132 3 chr4 98864398 98864769 -56765351 - MTC LTR MaLR -2 419 1 7 1339 486 171 57 0 chr4 98865283 98865371 -56764749 - B1_Mur1 SINE Alu -21 128 36 7 1339 273 227 63 51 chr4 98865302 98865381 -56764739 - MT2B LTR ERVL -344 257 178 7 1339 1301 176 90 88 chr4 98865552 98865683 -56764437 + ORR1B2 LTR MaLR 24 173 -194 7 1339 495 0 0 0 chr4 98865683 98865738 -56764382 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1339 1301 176 90 88 chr4 98865738 98865865 -56764255 + ORR1B2 LTR MaLR 174 300 -67 7 1339 1481 55 38 0 chr4 98865865 98866048 -56764072 - B2_Mm2 SINE B2 -5 190 1 7 1339 1301 176 90 88 chr4 98866048 98866131 -56763989 + ORR1B2 LTR MaLR 301 367 0 7 1339 29 28 0 0 chr4 98866143 98866179 -56763941 + AT_rich Low_complexity Low_complexity 1 36 0 7 1339 662 255 128 49 chr4 98867491 98867753 -56762367 + MTD LTR MaLR 40 311 -110 7 1339 947 163 29 122 chr4 98868125 98868363 -56761757 - B3 SINE B2 0 216 1 7 1339 711 309 54 4 chr4 98868386 98868665 -56761455 - L1MC4 LINE L1 -1033 7009 6717 7 1339 24 0 0 0 chr4 98868808 98868832 -56761288 + AT_rich Low_complexity Low_complexity 1 24 0 8 1339 426 85 0 0 chr4 98869864 98869923 -56760197 + (CCTA)n Simple_repeat Simple_repeat 1 59 0 8 1339 903 211 76 0 chr4 98869923 98870108 -56760012 - B3 SINE B2 -17 199 1 8 1339 580 122 19 9 chr4 98870437 98870545 -56759575 + B1_Mur2 SINE Alu 41 149 0 8 1339 189 121 0 0 chr4 98870545 98870578 -56759542 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 8 1339 339 192 0 0 chr4 98870634 98870707 -56759413 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1339 352 241 13 0 chr4 98870802 98870881 -56759239 - B4 SINE B4 -210 82 3 8 1339 806 65 164 75 chr4 98870927 98871061 -56759059 - B1_Mm SINE Alu 0 147 2 8 1339 1252 27 0 14 chr4 98871790 98871938 -56758182 - B1_Mus2 SINE Alu 0 147 2 8 1339 234 143 0 0 chr4 98871941 98871983 -56758137 - B1_Mur4 SINE Alu -5 145 104 8 1339 1207 175 14 5 chr4 98872036 98872248 -56757872 - B3 SINE B2 -1 215 2 8 1339 997 176 43 19 chr4 98872269 98872477 -56757643 - B3 SINE B2 0 216 4 8 1339 438 237 156 13 chr4 98873390 98873544 -56756576 + B3A SINE B2 6 181 -17 8 1339 369 220 109 36 chr4 98873690 98873827 -56756293 + RSINE1 SINE B4 3 149 -16 8 1339 327 267 39 10 chr4 98874193 98874295 -56755825 - PB1 SINE Alu -7 120 16 8 1339 263 262 144 10 chr4 98874337 98874441 -56755679 + PB1D9 SINE Alu 3 120 0 8 1339 218 295 0 97 chr4 98874566 98874690 -56755430 - B4A SINE B4 -170 122 11 8 1339 584 191 91 8 chr4 98874787 98874919 -56755201 - B3 SINE B2 -73 143 1 8 1339 21 57 0 0 chr4 98875581 98875616 -56754504 + AT_rich Low_complexity Low_complexity 1 35 0 8 1339 384 198 66 90 chr4 98875949 98876071 -56754049 - PB1D9 SINE Alu -1 119 1 8 1339 456 67 0 0 chr4 98876351 98876411 -56753709 + (CGTG)n Simple_repeat Simple_repeat 2 61 0 8 1339 575 253 25 12 chr4 98876832 98876992 -56753128 - B3 SINE B2 -27 189 28 8 1339 228 111 0 0 chr4 98877309 98877345 -56752775 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 8 1339 297 0 0 0 chr4 98877398 98877431 -56752689 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 8 1339 910 80 0 0 chr4 98877431 98877556 -56752564 - B1_Mus2 SINE Alu -3 144 20 8 1339 507 250 42 64 chr4 98877433 98877643 -56752477 - ID_B1 SINE B4 -71 221 16 8 1339 186 118 0 0 chr4 98878066 98878100 -56752020 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 8 1339 1100 36 29 0 chr4 98878100 98878238 -56751882 - B1_Mus1 SINE Alu -5 143 2 8 1339 450 349 46 0 chr4 98878999 98879151 -56750969 - ID_B1 SINE B4 -34 190 32 8 1339 876 303 69 42 chr4 98879535 98879869 -56750251 - Lx8 LINE L1 -141 7332 6990 8 1339 270 0 0 0 chr4 98879888 98879918 -56750202 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1339 259 139 0 0 chr4 98879921 98879964 -56750156 - Lx8 LINE L1 -1306 6167 6125 8 1339 785 238 10 31 chr4 98880952 98881147 -56748973 - B3A SINE B2 -1 197 7 8 1339 395 267 73 0 chr4 98881162 98881312 -56748808 - RSINE1 SINE B4 -2 163 3 8 1339 356 295 0 0 chr4 98881709 98881814 -56748306 - PB1D10 SINE Alu -1 116 12 8 1339 31 0 0 0 chr4 98882403 98882434 -56747686 + AT_rich Low_complexity Low_complexity 1 31 0 8 1339 280 309 45 38 chr4 98883038 98883208 -56746912 - L1_Rod LINE L1 -2856 2991 2830 8 1339 22 0 0 0 chr4 98884131 98884153 -56745967 + AT_rich Low_complexity Low_complexity 1 22 0 8 1339 303 177 77 24 chr4 98885225 98885464 -56744656 + (TTATA)n Simple_repeat Simple_repeat 1 251 0 8 1339 25 0 0 0 chr4 98885494 98885519 -56744601 + AT_rich Low_complexity Low_complexity 1 25 0 8 1339 728 189 83 0 chr4 98885519 98885651 -56744469 - B1_Mur1 SINE Alu -6 143 1 8 1339 592 268 31 44 chr4 98885708 98885887 -56744233 - B3A SINE B2 -10 185 11 8 1339 246 192 0 0 chr4 98885882 98885934 -56744186 - B3A SINE B2 -146 52 1 8 1339 297 109 0 0 chr4 98885946 98885992 -56744128 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 8 1339 497 125 45 0 chr4 98886005 98886093 -56744027 - B1_Mus2 SINE Alu -34 113 22 8 1339 218 297 15 45 chr4 98886400 98886467 -56743653 - ID4 SINE ID -1 82 18 8 1339 36 23 0 0 chr4 98886808 98886851 -56743269 + AT_rich Low_complexity Low_complexity 1 43 0 8 1339 1089 105 0 0 chr4 98887081 98887243 -56742877 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 8 1339 186 103 0 0 chr4 98887459 98887488 -56742632 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1339 216 67 0 0 chr4 98887520 98887550 -56742570 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 1339 378 0 0 0 chr4 98887554 98887596 -56742524 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1339 407 304 106 12 chr4 98887599 98887769 -56742351 - L1MB7 LINE L1 -55 6129 5944 8 1339 1273 79 90 0 chr4 98889896 98889915 -56740205 - B2_Mm2 SINE B2 0 195 161 8 1339 405 0 0 0 chr4 98889915 98889960 -56740160 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 8 1339 1273 79 90 0 chr4 98889960 98890118 -56740002 - B2_Mm2 SINE B2 -35 160 3 8 1339 304 272 69 17 chr4 98890708 98890824 -56739296 - RSINE1 SINE B4 -29 136 15 8 1339 282 284 11 22 chr4 98891868 98891942 -56738178 - MTE2b LTR MaLR -11 368 296 8 1339 606 276 5 57 chr4 98891942 98892134 -56737986 - RMER30 DNA MER1_type -1 201 20 8 1339 335 329 41 47 chr4 98892177 98892349 -56737771 + Charlie12 DNA MER1_type 456 626 -2247 8 1339 292 316 34 0 chr4 98892451 98892568 -56737552 + Charlie12 DNA MER1_type 627 747 -2126 8 1339 733 264 22 6 chr4 98892856 98893035 -56737085 + B3A SINE B2 1 182 -16 8 1339 438 266 72 0 chr4 98893192 98893331 -56736789 + B1F1 SINE Alu 1 149 0 8 1339 366 233 83 30 chr4 98893894 98894027 -56736093 - RMER15 LTR ERVL -14 561 422 8 1339 347 336 50 21 chr4 98894322 98894462 -56735658 - Tigger5 DNA MER2_type -2175 231 88 8 1339 378 270 44 18 chr4 98894469 98894582 -56735538 - PB1D10 SINE Alu -1 116 1 8 1339 1099 134 118 5 chr4 98894703 98894906 -56735214 - URR1A DNA MER1_type 0 226 1 8 1339 459 0 0 0 chr4 98895343 98895394 -56734726 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 8 1339 1106 66 0 0 chr4 98895394 98895530 -56734590 - B1_Mm SINE Alu -10 137 2 8 1339 683 218 7 45 chr4 98897863 98898017 -56732103 - B1_Mur1 SINE Alu -1 148 1 8 1339 1038 243 114 12 chr4 98898399 98898732 -56731388 + MTD LTR MaLR 53 419 0 8 1339 602 176 56 8 chr4 98898858 98898984 -56731136 - B1F2 SINE Alu -9 140 9 8 1339 585 214 8 0 chr4 98900730 98900847 -56729273 + B1_Mur1 SINE Alu 26 143 -6 8 1339 684 220 101 28 chr4 98901134 98901312 -56728808 - B3A SINE B2 -6 192 2 8 1339 281 224 60 25 chr4 98901321 98901411 -56728709 - L1M5 LINE L1 -383 5779 5685 8 1339 21 0 0 0 chr4 98902252 98902273 -56727847 + AT_rich Low_complexity Low_complexity 1 21 0 8 1339 354 45 0 0 chr4 98904182 98904226 -56725894 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1339 545 94 12 0 chr4 98904891 98904976 -56725144 + (TG)n Simple_repeat Simple_repeat 2 87 0 8 1339 774 134 0 0 chr4 98904977 98905096 -56725024 - B1_Mur4 SINE Alu -31 119 1 8 1339 715 224 90 20 chr4 98905100 98905300 -56724820 - B3 SINE B2 -1 215 2 8 1339 339 349 11 39 chr4 98905971 98906150 -56723970 + ORR1E LTR MaLR 1 174 -185 8 1339 2063 94 31 112 chr4 98906274 98906632 -56723488 - ORR1A4 LTR MaLR 0 329 1 8 1339 223 312 0 0 chr4 98906693 98906757 -56723363 + RSINE1 SINE B4 3 66 -99 8 1339 1060 191 34 0 chr4 98906955 98907164 -56722956 - B3 SINE B2 0 216 1 8 1339 243 57 0 70 chr4 98907176 98907233 -56722887 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 8 1339 199 203 34 0 chr4 98907297 98907356 -56722764 + CT-rich Low_complexity Low_complexity 1 61 0 8 1339 461 296 72 0 chr4 98907385 98907537 -56722583 - RSINE1 SINE B4 0 165 3 8 1339 269 217 0 0 chr4 98907545 98907605 -56722515 - B4A SINE B4 -146 146 87 8 1339 403 274 17 0 chr4 98907969 98908086 -56722034 - L1MC4 LINE L1 -151 7891 7773 8 1339 180 77 0 0 chr4 98908230 98908256 -56721864 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 1339 1029 132 0 0 chr4 98909250 98909417 -56720703 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 8 1339 1109 65 0 0 chr4 98909417 98909555 -56720565 - B1_Mus1 SINE Alu -10 138 1 8 1339 28041 4 0 0 chr4 98909569 98913369 -56716751 - L1Md_A LINE L1 0 6582 2783 8 1339 726 279 16 10 chr4 98913457 98913649 -56716471 + B3 SINE B2 24 216 0 8 1339 215 230 66 26 chr4 98914120 98914196 -56715924 + L2b LINE L2 3295 3373 -2 8 1339 823 198 15 0 chr4 98915791 98915951 -56714169 + B3 SINE B2 3 166 -32 8 1339 432 0 0 0 chr4 98915999 98916047 -56714073 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1339 825 187 64 0 chr4 98916334 98916505 -56713615 + B3 SINE B2 28 209 -7 8 1339 296 381 47 0 chr4 98917110 98917325 -56712795 - MIR SINE MIR -36 226 2 8 1339 905 169 70 0 chr4 98918527 98918699 -56711421 - B2_Mm2 SINE B2 -9 186 3 8 1339 568 205 32 2 chr4 98919040 98919196 -56710924 - B3 SINE B2 -26 169 3 8 1339 304 262 41 8 chr4 98919216 98919339 -56710781 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 8 1339 238 308 45 55 chr4 98919354 98919464 -56710656 - PB1D10 SINE Alu -8 109 1 8 1339 186 43 0 0 chr4 98920103 98920126 -56709994 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1339 471 309 5 129 chr4 98920243 98920373 -56709747 + RSINE1 SINE B4 3 126 -39 9 1339 405 0 0 0 chr4 98920373 98920418 -56709702 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1339 471 309 5 129 chr4 98920418 98920445 -56709675 + RSINE1 SINE B4 127 137 -28 9 1339 659 234 125 12 chr4 98920445 98920605 -56709515 + B3A SINE B2 5 182 -16 9 1339 471 309 5 129 chr4 98920605 98920632 -56709488 + RSINE1 SINE B4 138 164 -1 9 1339 1036 153 4 19 chr4 98920637 98920899 -56709221 + (CA)n Simple_repeat Simple_repeat 1 257 0 9 1339 330 272 54 0 chr4 98921154 98921246 -56708874 - B3A SINE B2 -10 188 92 9 1339 291 266 0 0 chr4 98921239 98921303 -56708817 - B3A SINE B2 -43 155 92 9 1339 269 281 0 0 chr4 98921296 98921360 -56708760 - B3A SINE B2 -43 155 92 9 1339 279 266 0 0 chr4 98921353 98921417 -56708703 - B3A SINE B2 -43 155 92 9 1339 291 266 0 0 chr4 98921410 98921474 -56708646 - B3A SINE B2 -43 155 92 9 1339 274 281 0 0 chr4 98921467 98921531 -56708589 - B3A SINE B2 -43 155 92 9 1339 280 266 0 0 chr4 98921524 98921588 -56708532 - B3A SINE B2 -43 155 92 9 1339 890 181 0 0 chr4 98921581 98921736 -56708384 - B3A SINE B2 -43 155 1 9 1339 690 300 122 22 chr4 98922134 98922635 -56707485 - L1MC1 LINE L1 -104 6229 5679 9 1339 826 254 23 28 chr4 98922647 98922862 -56707258 - B3 SINE B2 0 216 3 9 1339 289 253 54 21 chr4 98922914 98923007 -56707113 - B3A SINE B2 0 198 103 9 1339 262 264 113 0 chr4 98923927 98924033 -56706087 + PB1D9 SINE Alu 2 119 -1 9 1339 829 239 0 0 chr4 98924385 98924540 -56705580 - RSINE1 SINE B4 -8 157 3 9 1339 205 278 56 0 chr4 98924642 98924714 -56705406 - MIR SINE MIR -96 112 37 9 1339 849 142 0 0 chr4 98925857 98925998 -56704122 + (TTCC)n Simple_repeat Simple_repeat 2 142 0 9 1339 306 234 0 44 chr4 98925998 98926097 -56704023 - ID4_ SINE ID -49 103 15 9 1339 277 247 126 21 chr4 98928450 98928545 -56701575 + B4A SINE B4 1 105 -60 9 1339 28 46 0 44 chr4 98929251 98929319 -56700801 + AT_rich Low_complexity Low_complexity 1 65 0 9 1339 291 288 33 33 chr4 98929431 98929582 -56700538 - Tigger8 DNA MER2_type -273 393 243 9 1339 282 271 0 14 chr4 98929728 98929799 -56700321 - MTEb LTR MaLR -17 362 293 9 1339 618 197 30 15 chr4 98930120 98930254 -56699866 - B1_Mur1 SINE Alu -13 136 1 9 1339 207 204 0 0 chr4 98930343 98930392 -56699728 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1339 511 293 6 37 chr4 98930397 98930560 -56699560 - RSINE1 SINE B4 -4 161 4 9 1339 797 273 37 15 chr4 98930813 98931081 -56699039 - L1MB7 LINE L1 -356 5828 5555 9 1339 569 299 70 128 chr4 98931125 98931784 -56698336 - L1MB7 LINE L1 -751 5423 4804 9 1339 222 62 0 0 chr4 98935157 98935189 -56694931 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 9 1339 236 325 78 17 chr4 98936582 98936698 -56693422 - MIRb SINE MIR -115 153 31 9 1339 937 184 86 10 chr4 98937355 98937553 -56692567 + B3 SINE B2 1 213 -3 9 1339 243 303 219 0 chr4 98938662 98938840 -56691280 - MLT1H2 LTR MaLR -76 413 197 9 1339 479 177 0 0 chr4 98943854 98943933 -56686187 + B1_Mur4 SINE Alu 2 80 -70 9 1339 702 206 48 28 chr4 98944224 98944369 -56685751 - B1_Mur1 SINE Alu -1 148 1 9 1339 294 219 71 92 chr4 98944715 98944856 -56685264 - B1F SINE Alu -11 138 1 9 1339 212 167 0 0 chr4 98945493 98945535 -56684585 + T-rich Low_complexity Low_complexity 1 42 0 9 1339 228 216 0 0 chr4 98946173 98946224 -56683896 + G-rich Low_complexity Low_complexity 3 53 0 9 1339 450 0 0 0 chr4 98946288 98946338 -56683782 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1339 219 328 53 30 chr4 98946833 98946965 -56683155 - L3 LINE CR1 -21 4468 4334 9 1339 835 196 7 0 chr4 98947150 98947298 -56682822 + B1_Mur4 SINE Alu 2 150 0 9 1339 504 0 0 0 chr4 98947484 98947540 -56682580 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 9 1339 965 122 6 0 chr4 98947540 98947695 -56682425 + (TTC)n Simple_repeat Simple_repeat 3 159 0 9 1339 207 156 0 0 chr4 98947963 98947995 -56682125 + G-rich Low_complexity Low_complexity 3 34 0 9 1339 282 106 0 0 chr4 98947995 98948042 -56682078 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 9 1339 387 0 0 0 chr4 98948115 98948158 -56681962 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1339 191 329 27 0 chr4 98948485 98948558 -56681562 - MIR3 SINE MIR -17 191 117 9 1339 22 0 0 0 chr4 98949646 98949668 -56680452 + AT_rich Low_complexity Low_complexity 1 22 0 9 1339 314 293 24 0 chr4 98951139 98951221 -56678899 - BC1_Mm scRNA scRNA -61 91 8 9 1339 202 51 50 25 chr4 98951228 98951268 -56678852 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 9 1339 450 254 44 22 chr4 98951269 98951406 -56678714 - B1F SINE Alu -1 148 9 9 1339 259 284 137 0 chr4 98951609 98951704 -56678416 + RSINE1 SINE B4 30 137 -28 9 1339 206 127 14 87 chr4 98951997 98952066 -56678054 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 9 1339 361 306 40 0 chr4 98952079 98952203 -56677917 - L1ME1 LINE L1 -45 6134 6006 9 1339 366 310 45 30 chr4 98952782 98952915 -56677205 + RSINE1 SINE B4 1 135 -30 9 1339 288 0 0 0 chr4 98952924 98952956 -56677164 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1339 8009 46 10 2 chr4 98954424 98955668 -56674452 - L1Md_F2 LINE L1 -1 6581 5326 9 1339 351 294 19 10 chr4 98955801 98955904 -56674216 + PB1D10 SINE Alu 1 104 -13 9 1339 231 36 0 0 chr4 98955904 98955932 -56674188 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 1339 382 298 0 0 chr4 98956114 98956228 -56673892 - RSINE1 SINE B4 -47 118 5 9 1339 322 214 28 7 chr4 98957340 98957481 -56672639 + CT-rich Low_complexity Low_complexity 1 144 0 9 1339 188 268 18 0 chr4 98958166 98958222 -56671898 + MIR SINE MIR 118 174 -88 9 1339 1076 207 14 9 chr4 98958332 98958547 -56671573 - B3 SINE B2 0 216 1 9 1339 211 220 133 17 chr4 98958953 98959013 -56671107 - ID4 SINE ID -6 77 11 9 1340 474 18 0 0 chr4 98959457 98959512 -56670608 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 9 1340 645 267 130 22 chr4 98960042 98960226 -56669894 - B4 SINE B4 0 292 89 9 1340 866 139 0 7 chr4 98960226 98960378 -56669742 + (TA)n Simple_repeat Simple_repeat 1 151 0 9 1340 264 133 22 0 chr4 98960378 98960423 -56669697 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1340 391 261 16 65 chr4 98960423 98960546 -56669574 - RSINE1 SINE B4 0 165 49 9 1340 292 259 23 12 chr4 98960550 98960636 -56669484 - B4 SINE B4 -192 100 14 9 1340 496 40 13 13 chr4 98962132 98962208 -56667912 + (TG)n Simple_repeat Simple_repeat 2 77 0 9 1340 249 159 0 0 chr4 98963382 98963426 -56666694 + A-rich Low_complexity Low_complexity 1 44 0 9 1340 301 232 0 42 chr4 98963976 98964048 -56666072 - B1_Mur4 SINE Alu -2 148 80 9 1340 535 116 88 6 chr4 98964075 98964205 -56665915 - B1_Mus1 SINE Alu 0 149 1 9 1340 439 248 25 8 chr4 98964312 98964434 -56665686 + L2 LINE L2 2738 2861 -558 9 1340 243 289 25 140 chr4 98964489 98964646 -56665474 - ID_B1 SINE B4 0 224 86 9 1340 358 270 16 25 chr4 98964524 98964650 -56665470 - B1_Mus2 SINE Alu -26 123 1 9 1340 225 291 116 0 chr4 98964657 98964743 -56665377 - PB1D10 SINE Alu -21 96 1 9 1340 320 251 50 4 chr4 98966925 98967030 -56663090 - MIR SINE MIR -125 151 48 9 1340 465 122 0 0 chr4 98967150 98967224 -56662896 + (TA)n Simple_repeat Simple_repeat 2 75 0 9 1340 219 308 124 8 chr4 98967370 98967491 -56662629 - MIRb SINE MIR -61 207 73 9 1340 326 330 31 63 chr4 98967523 98967714 -56662406 - MLT1L LTR MaLR 0 610 426 9 1340 1765 58 4 0 chr4 98967885 98968110 -56662010 - L1_Mus2 LINE L1 -1 6565 6340 9 1340 219 114 0 0 chr4 98968117 98968152 -56661968 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1340 474 221 179 8 chr4 98968160 98968283 -56661837 - RSINE1 SINE B4 -17 148 5 9 1340 370 236 101 54 chr4 98968283 98968431 -56661689 + MLT1B LTR MaLR 80 234 -156 9 1340 409 215 34 0 chr4 98968527 98968676 -56661444 + (TA)n Simple_repeat Simple_repeat 1 154 0 9 1340 1112 219 46 12 chr4 98968676 98968917 -56661203 - ORR1E LTR MaLR -108 251 3 9 1340 680 320 112 32 chr4 98969035 98969383 -56660737 - MTE2b LTR MaLR -1 378 3 9 1340 223 234 21 0 chr4 98969449 98969496 -56660624 + CT-rich Low_complexity Low_complexity 4 51 0 9 1340 427 258 19 63 chr4 98969496 98969702 -56660418 + MLT1B LTR MaLR 161 375 -15 9 1340 1157 268 8 4 chr4 98969737 98970003 -56660117 + B4A SINE B4 8 274 -18 9 1340 432 97 0 0 chr4 98970013 98970075 -56660045 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1340 302 319 58 22 chr4 98974419 98974557 -56655563 - L1MC3 LINE L1 -10 7775 7633 9 1340 247 320 15 23 chr4 98974557 98974688 -56655432 + GA-rich Low_complexity Low_complexity 5 134 0 9 1340 511 265 13 13 chr4 98974880 98975033 -56655087 - L1MC3 LINE L1 -191 7594 7442 9 1340 238 274 0 87 chr4 98975093 98975185 -56654935 - L1MC3 LINE L1 -330 7455 7372 9 1340 1149 199 204 3 chr4 98975240 98975558 -56654562 + MTD LTR MaLR 12 393 -26 9 1340 24 53 0 0 chr4 98976098 98976136 -56653984 + AT_rich Low_complexity Low_complexity 1 38 0 9 1340 340 265 0 0 chr4 98976137 98976205 -56653915 - RSINE1 SINE B4 -85 80 13 9 1340 1209 276 50 25 chr4 98976350 98976710 -56653410 - Lx8 LINE L1 -81 7392 7024 9 1340 497 279 14 35 chr4 98976814 98976955 -56653165 - RSINE1 SINE B4 -15 150 13 9 1340 639 249 57 36 chr4 98976964 98977156 -56652964 - B3A SINE B2 -2 196 1 9 1340 218 32 32 0 chr4 98977891 98977922 -56652198 + (GGA)n Simple_repeat Simple_repeat 1 32 0 9 1340 963 188 23 32 chr4 98978521 98978741 -56651379 - URR1A DNA MER1_type 0 226 9 1 1340 181 54 0 98 chr4 98978894 98978935 -56651185 + C-rich Low_complexity Low_complexity 5 41 0 1 1340 332 225 14 0 chr4 98979389 98979460 -56650660 - MIRb SINE MIR -75 193 122 1 1340 192 310 42 0 chr4 98979512 98979583 -56650537 - MIRc SINE MIR -162 106 33 1 1340 2305 84 59 28 chr4 98980925 98981280 -56648840 - Lx LINE L1 0 6654 6289 1 1340 23 0 0 0 chr4 98981287 98981310 -56648810 + AT_rich Low_complexity Low_complexity 1 23 0 1 1340 589 315 89 43 chr4 98981395 98981720 -56648400 - MER2 DNA MER2_type -5 340 1 1 1340 283 216 72 4 chr4 98982119 98982137 -56647983 - PB1 SINE Alu -29 88 3 1 1340 269 210 63 16 chr4 98982137 98982200 -56647920 - ID_B1 SINE B4 -75 149 84 1 1340 1470 65 0 5 chr4 98983178 98983364 -56646756 - B2_Mm2 SINE B2 -6 189 5 1 1340 342 0 0 0 chr4 98983385 98983423 -56646697 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1 1340 591 271 28 6 chr4 98983573 98983751 -56646369 - B3A SINE B2 -16 182 1 1 1340 1104 86 12 6 chr4 98984444 98984608 -56645512 + B2_Mm2 SINE B2 2 166 -29 1 1340 317 266 7 41 chr4 98984832 98984977 -56645143 - L2 LINE L2 -737 2682 2543 1 1340 315 0 0 0 chr4 98987734 98987769 -56642351 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1340 943 209 45 25 chr4 98987787 98987988 -56642132 + B3 SINE B2 5 209 -7 1 1340 277 309 18 0 chr4 98987995 98988105 -56642015 + Charlie26a DNA MER1_type 69 180 -145 1 1340 484 235 146 18 chr4 98988187 98988202 -56641918 - B3 SINE B2 -4 212 198 1 1340 428 0 19 0 chr4 98988202 98988254 -56641866 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1 1340 508 235 146 18 chr4 98988254 98988403 -56641717 - B3A SINE B2 -19 197 27 1 1340 301 318 27 45 chr4 98988404 98988516 -56641604 - PB1D10 SINE Alu -7 110 1 1 1340 202 353 24 56 chr4 98989973 98990099 -56640021 - MIR SINE MIR -62 146 25 1 1340 273 356 131 20 chr4 98991289 98991639 -56638481 + Tigger15a DNA TcMar 75 463 -252 1 1340 267 31 0 0 chr4 98991681 98991713 -56638407 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1340 358 252 24 20 chr4 98992562 98992692 -56637428 - MIRm SINE MIR -140 136 2 1 1340 1783 137 18 50 chr4 98992947 98993286 -56636834 + ORR1B1 LTR MaLR 1 393 -1 1 1340 647 233 0 11 chr4 98994115 98994297 -56635823 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1340 254 347 18 31 chr4 98996122 98996238 -56633882 + MIRb SINE MIR 16 136 -132 1 1340 334 317 48 16 chr4 98996294 98996483 -56633637 + MIRb SINE MIR 55 249 -19 1 1340 288 0 0 0 chr4 98998945 98998977 -56631143 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1 1340 233 337 66 25 chr4 98999571 98999769 -56630351 - MIRc SINE MIR -3 265 60 1 1340 1809 205 32 24 chr4 99000660 99001039 -56629081 - MTD LTR MaLR -37 382 1 1 1340 1064 135 6 12 chr4 99001059 99001231 -56628889 - URR1A DNA MER1_type 0 226 56 2 1340 231 300 117 91 chr4 99001443 99001597 -56628523 + Charlie15a DNA MER1_type 27 184 -40 3 1340 284 288 99 169 chr4 99001618 99002003 -56628117 - MLT1A0 LTR MaLR -7 358 1 4 1340 2009 256 78 25 chr4 99002127 99002725 -56627395 - RCHARR1 DNA MER1_type 0 974 345 5 1340 1009 84 0 0 chr4 99002725 99002856 -56627264 + B1_Mus1 SINE Alu 3 133 -15 6 1340 304 14 0 99 chr4 99002861 99002942 -56627178 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 7 1340 562 296 228 7 chr4 99002949 99003225 -56626895 - RCHARR1 DNA MER1_type -637 337 1 5 1340 294 95 0 0 chr4 99003317 99003359 -56626761 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8 1340 3699 121 60 17 chr4 99003362 99003959 -56626161 - Lx4A LINE L1 -9 7049 6427 9 1340 298 167 0 0 chr4 99003959 99004007 -56626113 + Lx4A LINE L1 5962 6009 -1049 1 1340 271 316 162 31 chr4 99004153 99004313 -56625807 - MLT1J LTR MaLR -309 203 23 1 1340 283 376 11 23 chr4 99006347 99006434 -56623686 + MIR SINE MIR 8 93 -169 1 1340 432 0 0 0 chr4 99006879 99006927 -56623193 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1340 252 86 0 0 chr4 99006927 99006962 -56623158 + (TAA)n Simple_repeat Simple_repeat 1 35 0 1 1340 384 152 0 0 chr4 99007641 99007707 -56622413 + T-rich Low_complexity Low_complexity 1 66 0 1 1340 410 111 0 60 chr4 99008485 99008552 -56621568 - B1_Mur4 SINE Alu -5 145 83 1 1340 314 222 40 72 chr4 99009623 99009724 -56620396 + MIRc SINE MIR 60 154 -114 1 1340 804 248 13 18 chr4 99011840 99012066 -56618054 + L1MA6 LINE L1 6069 6293 -7 1 1340 318 282 0 0 chr4 99013597 99013739 -56616381 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1340 216 167 45 45 chr4 99014295 99014383 -56615737 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1340 877 201 116 0 chr4 99015491 99015680 -56614440 - B3 SINE B2 -5 211 1 2 1340 21 0 0 0 chr4 99018388 99018409 -56611711 + AT_rich Low_complexity Low_complexity 1 21 0 2 1340 231 114 0 0 chr4 99018988 99019023 -56611097 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 1340 362 151 14 0 chr4 99019071 99019144 -56610976 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1340 790 162 0 11 chr4 99019197 99019378 -56610742 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1340 180 0 0 0 chr4 99021021 99021041 -56609079 + (C)n Simple_repeat Simple_repeat 1 20 0 2 1340 525 80 0 0 chr4 99021227 99021302 -56608818 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1340 396 0 0 0 chr4 99022581 99022625 -56607495 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 1340 279 0 0 0 chr4 99022985 99023016 -56607104 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1340 22 56 0 0 chr4 99023028 99023064 -56607056 + AT_rich Low_complexity Low_complexity 1 36 0 2 1340 238 123 0 34 chr4 99023123 99023182 -56606938 + (TTG)n Simple_repeat Simple_repeat 1 57 0 3 1340 1073 85 7 0 chr4 99023319 99023460 -56606660 + B1_Mus1 SINE Alu 1 142 -6 3 1340 1193 94 0 16 chr4 99023464 99023647 -56606473 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1340 522 0 0 0 chr4 99023668 99023726 -56606394 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 3 1340 243 0 0 0 chr4 99024233 99024260 -56605860 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1340 717 63 0 0 chr4 99024275 99024370 -56605750 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 3 1340 451 278 150 0 chr4 99024384 99024517 -56605603 - RSINE1 SINE B4 -7 158 6 3 1340 1208 62 0 0 chr4 99024708 99024854 -56605266 + B1_Mus1 SINE Alu 1 146 -2 3 1340 302 0 26 0 chr4 99024854 99024892 -56605228 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1340 465 34 0 0 chr4 99024915 99024974 -56605146 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1340 861 290 107 48 chr4 99024974 99025669 -56604451 - L1MA4A LINE L1 -376 5927 5179 4 1340 342 0 0 0 chr4 99025711 99025749 -56604371 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1340 636 262 0 0 chr4 99025752 99025878 -56604242 - RSINE1 SINE B4 -34 131 6 4 1340 631 296 162 16 chr4 99025882 99026259 -56603861 - L1MA4A LINE L1 -924 5219 4788 4 1340 1192 172 19 10 chr4 99026295 99026501 -56603619 + B3 SINE B2 2 209 -7 4 1340 26 0 0 0 chr4 99026769 99026795 -56603325 + AT_rich Low_complexity Low_complexity 1 26 0 4 1340 901 228 45 20 chr4 99026797 99026998 -56603122 - B3 SINE B2 -5 211 6 4 1340 202 229 0 0 chr4 99027113 99027161 -56602959 + T-rich Low_complexity Low_complexity 1 48 0 4 1340 8593 24 11 3 chr4 99027164 99028471 -56601649 - L1Md_F3 LINE L1 -5 6579 5263 4 1340 486 0 0 0 chr4 99029035 99029089 -56601031 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1340 392 269 59 52 chr4 99029515 99029668 -56600452 + MIRb SINE MIR 11 164 -104 4 1340 25 31 0 0 chr4 99030126 99030158 -56599962 + AT_rich Low_complexity Low_complexity 1 32 0 5 1340 546 257 57 0 chr4 99030707 99030847 -56599273 - B1F1 SINE Alu -1 148 1 5 1340 1074 131 52 37 chr4 99033041 99033232 -56596888 + B2_Mm2 SINE B2 1 194 -1 5 1340 202 308 65 32 chr4 99033446 99033570 -56596550 + MIR SINE MIR 69 196 -66 5 1340 274 331 205 0 chr4 99033615 99033766 -56596354 + L4 LINE RTE 1681 1862 -167 5 1340 410 299 73 11 chr4 99035966 99036145 -56593975 + L1MB3 LINE L1 5837 6026 -157 5 1340 588 329 28 0 chr4 99036301 99036514 -56593606 - Tigger5 DNA MER2_type -49 2357 2139 5 1340 360 0 0 0 chr4 99036733 99036773 -56593347 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1340 622 267 117 25 chr4 99038051 99038247 -56591873 + MIR SINE MIR 27 240 -22 5 1340 24 0 0 0 chr4 99041189 99041213 -56588907 + AT_rich Low_complexity Low_complexity 1 24 0 5 1340 21 36 0 0 chr4 99042383 99042411 -56587709 + AT_rich Low_complexity Low_complexity 1 28 0 6 1340 183 162 0 0 chr4 99045063 99045100 -56585020 + G-rich Low_complexity Low_complexity 2 38 0 6 1340 254 211 0 87 chr4 99045289 99045370 -56584750 - MIR SINE MIR -103 173 92 6 1340 280 297 203 0 chr4 99045867 99045985 -56584135 + MIR SINE MIR 35 176 -86 6 1340 258 284 161 62 chr4 99047036 99047237 -56582883 - MIRc SINE MIR -47 221 8 6 1340 669 25 0 0 chr4 99048143 99048222 -56581898 + (TTAGGG)n Simple_repeat Simple_repeat 4 82 0 6 1340 23 0 0 0 chr4 99049469 99049492 -56580628 + AT_rich Low_complexity Low_complexity 1 23 0 6 1340 432 130 0 0 chr4 99049746 99049815 -56580305 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1340 183 121 52 0 chr4 99049814 99049872 -56580248 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1340 389 285 125 55 chr4 99049891 99050147 -56579973 + B4 SINE B4 2 275 -17 6 1340 337 182 0 20 chr4 99050293 99050394 -56579726 + (TG)n Simple_repeat Simple_repeat 2 100 0 7 1340 358 333 0 0 chr4 99053145 99053244 -56576876 + PB1D10 SINE Alu 1 99 -18 7 1340 229 214 43 0 chr4 99053455 99053525 -56576595 + (TATAA)n Simple_repeat Simple_repeat 4 76 0 7 1340 1488 264 62 11 chr4 99054038 99054558 -56575562 + L1M2 LINE L1 4594 5139 -1004 7 1340 982 106 21 0 chr4 99054572 99054714 -56575406 + B1_Mur4 SINE Alu 6 150 0 7 1340 235 87 72 0 chr4 99054834 99054903 -56575217 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 7 1340 1013 276 149 29 chr4 99054906 99055429 -56574691 + L1_Rod LINE L1 5234 5819 -28 7 1340 360 0 0 0 chr4 99056567 99056607 -56573513 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1340 2154 209 11 53 chr4 99057620 99058162 -56571958 + MT2A LTR ERVL 11 529 -4 7 1340 244 271 193 35 chr4 99058380 99058525 -56571595 + L3 LINE CR1 4256 4423 -66 7 1340 40 37 0 0 chr4 99058664 99058718 -56571402 + AT_rich Low_complexity Low_complexity 1 54 0 8 1340 2932 244 57 40 chr4 99058901 99059381 -56570739 - RCHARR1 DNA MER1_type -9 965 503 8 1340 983 152 61 11 chr4 99059381 99059561 -56570559 + B2_Mm2 SINE B2 2 190 -5 8 1340 2932 244 57 40 chr4 99059561 99060027 -56570093 - RCHARR1 DNA MER1_type -472 502 3 8 1340 639 293 119 40 chr4 99060270 99060640 -56569480 + MTD LTR MaLR 7 405 -14 8 1340 25 0 0 0 chr4 99061199 99061224 -56568896 + AT_rich Low_complexity Low_complexity 1 25 0 8 1340 279 208 48 72 chr4 99062090 99062173 -56567947 - ID4 SINE ID -69 83 3 8 1340 207 0 0 0 chr4 99062354 99062377 -56567743 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1340 250 332 39 49 chr4 99062961 99063164 -56566956 - L1MC LINE L1 -2149 5733 5533 8 1340 834 116 0 0 chr4 99064350 99064488 -56565632 + (CA)n Simple_repeat Simple_repeat 1 138 0 8 1340 453 19 0 0 chr4 99064845 99064899 -56565221 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1340 2067 191 39 10 chr4 99064980 99065387 -56564733 - MTD LTR MaLR 0 419 1 9 1340 183 322 17 0 chr4 99065804 99065863 -56564257 - MIRc SINE MIR -38 230 171 9 1340 183 260 54 14 chr4 99066289 99066363 -56563757 - MIRb SINE MIR -80 188 112 9 1340 935 288 50 21 chr4 99066462 99066799 -56563321 + MLT1A0 LTR MaLR 19 365 0 9 1340 26 30 0 0 chr4 99067477 99067510 -56562610 + AT_rich Low_complexity Low_complexity 1 33 0 9 1340 188 340 38 19 chr4 99067960 99068065 -56562055 + L2b LINE L2 3261 3367 -8 9 1340 278 297 161 21 chr4 99068231 99068417 -56561703 + MLT1C LTR MaLR 177 388 -79 9 1340 253 284 16 79 chr4 99069008 99069134 -56560986 + MER20 DNA MER1_type 3 120 -99 9 1340 645 228 0 8 chr4 99069662 99069786 -56560334 + RSINE1 SINE B4 8 130 -35 9 1340 1370 56 0 3 chr4 99069792 99070079 -56560041 + (CA)n Simple_repeat Simple_repeat 1 285 0 9 1340 252 294 23 23 chr4 99070771 99070858 -56559262 + MLT1C LTR MaLR 508 594 -16 9 1340 640 275 16 27 chr4 99070914 99071101 -56559019 + B4A SINE B4 2 186 -106 1 1340 310 266 76 50 chr4 99071126 99071245 -56558875 - RSINE1 SINE B4 -41 124 3 1 1340 232 333 21 11 chr4 99071356 99071450 -56558670 - MIR3 SINE MIR -19 189 95 1 1340 612 206 103 44 chr4 99072290 99072493 -56557627 + B3 SINE B2 2 216 0 1 1340 315 0 0 0 chr4 99072598 99072633 -56557487 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 1 1340 405 0 0 0 chr4 99072777 99072822 -56557298 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1340 517 98 0 42 chr4 99072818 99072914 -56557206 + (GGA)n Simple_repeat Simple_repeat 2 93 0 1 1340 227 233 17 0 chr4 99073179 99073239 -56556881 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1340 304 295 70 6 chr4 99073239 99073396 -56556724 + ORSL-2b DNA Tip100 342 508 0 1 1340 238 301 27 0 chr4 99073542 99073615 -56556505 + L1M5 LINE L1 5555 5629 -495 1 1340 555 306 108 25 chr4 99073816 99074252 -56555868 + L1MB8 LINE L1 4816 5287 -859 1 1340 277 243 78 70 chr4 99074362 99074477 -56555643 + L1MB8 LINE L1 5565 5680 -498 1 1340 359 221 435 58 chr4 99074497 99074778 -56555342 + L1MB8 LINE L1 5774 6160 -18 1 1340 821 90 14 0 chr4 99075805 99075950 -56554170 + (TCTCTG)n Simple_repeat Simple_repeat 4 150 0 1 1340 423 0 0 0 chr4 99077091 99077138 -56552982 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1340 188 229 165 24 chr4 99077487 99077572 -56552548 - MIRb SINE MIR -47 221 125 1 1340 1863 65 36 143 chr4 99077886 99078243 -56551877 - ORR1A2 LTR MaLR -8 319 1 1 1340 267 203 0 0 chr4 99078393 99078457 -56551663 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1340 463 277 76 57 chr4 99079084 99079426 -56550694 + L1MC2 LINE L1 5201 5506 -2279 1 1340 8232 46 1 6 chr4 99079426 99080427 -56549693 + L1Md_F2 LINE L1 5587 6582 0 1 1340 402 291 121 28 chr4 99080427 99080674 -56549446 + L1MC2 LINE L1 5507 5783 -2002 1 1340 266 321 18 18 chr4 99080710 99080824 -56549296 + MER34A LTR ERV1 7 120 -451 1 1340 272 206 27 0 chr4 99081159 99081232 -56548888 + L1MC2 LINE L1 5827 5901 -432 1 1340 423 246 71 0 chr4 99081273 99081429 -56548691 + L1MC2 LINE L1 5965 6141 -203 1 1340 466 43 29 0 chr4 99081457 99081526 -56548594 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1340 198 0 0 0 chr4 99081617 99081639 -56548481 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1340 2568 264 95 13 chr4 99081789 99082659 -56547461 - RCHARR1 DNA MER1_type -3 971 30 1 1340 203 288 15 0 chr4 99084765 99084831 -56545289 + MER5B DNA MER1_type 1 67 -111 1 1340 378 0 0 0 chr4 99085857 99085899 -56544221 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1340 644 0 0 13 chr4 99085952 99086029 -56544091 + (GAA)n Simple_repeat Simple_repeat 2 77 0 1 1340 282 326 76 22 chr4 99086095 99086280 -56543840 - LTR79 LTR ERVL -3 524 330 1 1340 459 52 0 0 chr4 99086804 99086862 -56543258 + (TCC)n Simple_repeat Simple_repeat 1 58 0 1 1340 1708 103 0 0 chr4 99087008 99087231 -56542889 + URR1B DNA MER1_type 1 223 -2 1 1340 202 0 59 29 chr4 99087437 99087471 -56542649 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1340 1112 65 0 0 chr4 99087471 99087609 -56542511 - B1_Mus2 SINE Alu -9 138 1 1 1340 481 328 49 5 chr4 99087674 99087858 -56542262 + ORR1E LTR MaLR 1 192 -167 1 1340 368 227 62 0 chr4 99088554 99088651 -56541469 + L1MA6 LINE L1 6078 6180 -120 1 1340 581 259 0 15 chr4 99088651 99088788 -56541332 + B3 SINE B2 1 135 -81 1 1340 263 72 0 23 chr4 99088791 99088834 -56541286 + (GGA)n Simple_repeat Simple_repeat 1 42 0 1 1340 1208 199 154 12 chr4 99088838 99089052 -56541068 + Lx9 LINE L1 7246 7463 -181 1 1340 438 36 0 0 chr4 99089052 99089108 -56541012 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1340 1208 199 154 12 chr4 99089108 99089218 -56540902 + Lx9 LINE L1 7464 7615 -29 1 1340 198 200 15 77 chr4 99089481 99089546 -56540574 - MIRm SINE MIR 0 276 216 1 167 1017 275 62 21 chr4 99090380 99090718 -56539402 - ORR1E LTR MaLR -4 355 4 1 1341 228 248 21 160 chr4 99090786 99090930 -56539190 - Tigger5 DNA MER2_type -7 2399 2276 1 1341 347 185 0 61 chr4 99090934 99091049 -56539071 + T-rich Low_complexity Low_complexity 3 110 0 1 1341 432 273 114 57 chr4 99091064 99091239 -56538881 - Tigger5 DNA MER2_type -2211 195 11 1 1341 614 323 141 5 chr4 99091243 99091641 -56538479 - MLT2B1 LTR ERVL -45 475 24 1 1341 1648 48 0 0 chr4 99091653 99091860 -56538260 + L1_Mus2 LINE L1 6360 6566 0 1 1341 666 261 12 47 chr4 99091887 99092056 -56538064 + RSINE1 SINE B4 3 165 0 1 1341 315 0 0 0 chr4 99092057 99092092 -56538028 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1341 187 316 58 43 chr4 99093080 99093219 -56536901 + MIRc SINE MIR 1 141 -127 1 1341 1093 108 0 0 chr4 99093237 99093385 -56536735 + B1_Mus1 SINE Alu 1 148 0 1 1341 232 120 40 0 chr4 99093387 99093437 -56536683 + GA-rich Low_complexity Low_complexity 3 54 0 1 1341 801 245 68 0 chr4 99093493 99093685 -56536435 + B3 SINE B2 7 211 -5 1 1341 459 254 76 14 chr4 99093855 99093999 -56536121 + MER20 DNA MER1_type 27 179 -40 1 1341 196 167 0 94 chr4 99094059 99094112 -56536008 + MIR SINE MIR 107 154 -108 1 1341 360 111 0 0 chr4 99094120 99094174 -56535946 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 1 1341 1087 28 0 0 chr4 99094175 99094316 -56535804 - B1_Mus1 SINE Alu -2 146 6 1 1341 487 251 152 62 chr4 99095307 99095512 -56534608 + L1MB3 LINE L1 5431 5634 -549 1 1341 378 42 0 0 chr4 99095512 99095560 -56534560 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1341 487 251 152 62 chr4 99095560 99095630 -56534490 + L1MB3 LINE L1 5635 5731 -452 1 1341 1813 148 142 0 chr4 99095788 99096139 -56533981 - MTD LTR MaLR -1 418 18 1 1341 375 240 98 30 chr4 99096222 99096355 -56533765 + L1MB3 LINE L1 5942 6083 -100 1 1341 249 259 56 11 chr4 99096605 99096695 -56533425 + ORR1E LTR MaLR 266 359 0 1 1341 855 76 25 25 chr4 99098284 99098445 -56531675 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 1 1341 854 289 65 35 chr4 99098458 99098888 -56531232 - L1MA4 LINE L1 -394 5906 5464 1 1341 333 0 0 0 chr4 99099094 99099131 -56530989 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 1 1341 626 182 19 7 chr4 99099266 99099421 -56530699 + GA-rich Low_complexity Low_complexity 1 157 0 1 1341 323 300 9 9 chr4 99099600 99099711 -56530409 + CT-rich Low_complexity Low_complexity 6 116 0 1 1341 5712 164 28 32 chr4 99100143 99101452 -56528668 + L1Md_T LINE L1 99 1205 -5411 1 1341 37210 31 0 0 chr4 99101458 99105876 -56524244 + L1Md_T LINE L1 1170 5586 -297 1 1341 8252 51 0 0 chr4 99105876 99106872 -56523248 + L1Md_T LINE L1 5587 6582 0 1 1341 234 0 0 0 chr4 99106878 99106904 -56523216 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1341 195 231 20 31 chr4 99109066 99109135 -56520985 - MIR SINE MIR -173 95 29 1 1341 797 222 0 0 chr4 99109969 99110113 -56520007 + B1_Mur2 SINE Alu 1 144 -5 1 1341 492 18 0 0 chr4 99111805 99111862 -56518258 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1341 455 337 58 23 chr4 99113920 99114181 -56515939 + MLT1A LTR MaLR 97 366 -8 1 1341 2441 101 57 3 chr4 99114633 99114982 -56515138 + RLTR9A LTR ERVK 1 368 0 1 1341 284 291 68 68 chr4 99115352 99115470 -56514650 + MIRc SINE MIR 31 148 -120 1 1341 546 271 53 24 chr4 99115632 99115802 -56514318 - RMER30 DNA MER1_type -23 179 5 1 1341 940 120 7 0 chr4 99116515 99116657 -56513463 + B1_Mus1 SINE Alu 6 148 0 1 1341 417 237 11 0 chr4 99116786 99116879 -56513241 - PB1D10 SINE Alu -19 98 5 1 1341 285 315 84 8 chr4 99116891 99117022 -56513098 - L2a LINE L2 -6 3420 3280 1 1341 938 158 168 0 chr4 99117345 99117535 -56512585 + URR1B DNA MER1_type 1 222 -3 1 1341 228 299 244 0 chr4 99119198 99119325 -56510795 + MIRb SINE MIR 35 192 -76 1 1341 2045 182 26 8 chr4 99120111 99120498 -56509622 - MTD LTR MaLR -8 411 18 1 1341 1832 159 56 6 chr4 99120862 99121204 -56508916 + MTD LTR MaLR 26 384 -35 1 1341 872 218 8 124 chr4 99122345 99122586 -56507534 - B3 SINE B2 -3 213 1 1 1341 727 144 18 24 chr4 99122847 99123011 -56507109 + GA-rich Low_complexity Low_complexity 6 168 0 1 1341 284 207 241 7 chr4 99123051 99123192 -56506928 - MIRb SINE MIR -62 206 33 1 1341 24 0 0 0 chr4 99123236 99123260 -56506860 + AT_rich Low_complexity Low_complexity 1 24 0 1 1341 39 0 0 0 chr4 99123479 99123518 -56506602 + AT_rich Low_complexity Low_complexity 1 39 0 1 1341 540 168 0 0 chr4 99123990 99124091 -56506029 + CT-rich Low_complexity Low_complexity 2 102 0 1 1341 239 241 133 33 chr4 99124301 99124391 -56505729 - MIRb SINE MIR -81 187 89 1 1341 216 0 0 0 chr4 99124883 99124907 -56505213 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1341 675 137 0 46 chr4 99124945 99125075 -56505045 - B1F2 SINE Alu -1 148 25 1 1341 1857 129 73 43 chr4 99125076 99125474 -56504646 + RMER17C LTR ERVK 1 410 0 1 1341 306 0 0 0 chr4 99125561 99125595 -56504525 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1341 306 0 0 0 chr4 99125595 99125628 -56504492 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1341 198 0 0 0 chr4 99125702 99125724 -56504396 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1341 297 89 0 0 chr4 99126589 99126634 -56503486 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1341 224 209 116 50 chr4 99128561 99128682 -56501438 - MIRb SINE MIR -34 234 106 1 1341 403 257 10 10 chr4 99128686 99128788 -56501332 - PB1D10 SINE Alu -9 108 7 1 1341 214 296 37 0 chr4 99128810 99128864 -56501256 - MIRb SINE MIR -185 83 28 1 1341 591 272 65 148 chr4 99128867 99129083 -56501037 + B3 SINE B2 1 216 0 1 1341 1383 73 5 25 chr4 99129193 99129389 -56500731 - B2_Mm1a SINE B2 0 193 2 1 1341 368 274 57 0 chr4 99129505 99129611 -56500509 + ID_B1 SINE B4 68 179 -45 1 1341 507 226 10 0 chr4 99129522 99129624 -56500496 + PB1D10 SINE Alu 9 111 -6 1 1341 2980 73 22 29 chr4 99129661 99130071 -56500049 - MTB_Mm LTR MaLR 0 407 1 1 1341 306 0 0 0 chr4 99130334 99130368 -56499752 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1341 433 167 26 0 chr4 99130387 99130465 -56499655 - B3 SINE B2 0 216 137 1 1341 246 250 62 0 chr4 99130631 99130695 -56499425 - PB1D10 SINE Alu -6 111 44 2 1341 306 326 50 31 chr4 99130696 99130918 -56499202 - L1MA4 LINE L1 -47 6253 6028 2 1341 937 297 14 18 chr4 99130987 99131268 -56498852 - B4 SINE B4 0 292 13 2 1341 293 249 192 25 chr4 99131270 99131361 -56498759 - L1MA4 LINE L1 -395 5905 5788 2 1341 476 32 16 0 chr4 99131361 99131423 -56498697 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2 1341 293 249 192 25 chr4 99131423 99131529 -56498591 - L1MA4 LINE L1 -513 5787 5675 2 1341 474 88 0 0 chr4 99132102 99132170 -56497950 + (CCA)n Simple_repeat Simple_repeat 1 68 0 2 1341 324 0 0 0 chr4 99133090 99133126 -56496994 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1341 246 257 97 71 chr4 99133811 99133924 -56496196 + ORR1E LTR MaLR 75 190 -169 2 1341 24 32 0 0 chr4 99134601 99134632 -56495488 + AT_rich Low_complexity Low_complexity 1 31 0 2 1341 4609 94 117 0 chr4 99134773 99135431 -56494689 - RMER19A LTR ERVK -2 735 1 2 1341 269 323 29 40 chr4 99135876 99136073 -56494047 - MIRb SINE MIR -18 250 52 2 1341 198 91 0 0 chr4 99136370 99136403 -56493717 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1341 182 312 140 0 chr4 99136525 99136618 -56493502 + MIRc SINE MIR 57 162 -106 2 1341 2678 155 178 23 chr4 99136778 99137307 -56492813 + RMER19C LTR ERVK 1 611 0 2 1341 865 296 24 47 chr4 99137538 99137836 -56492284 - B4A SINE B4 0 292 2 2 1341 1343 260 12 6 chr4 99137943 99138284 -56491836 + ORR1D2 LTR MaLR 1 343 -27 2 1341 279 0 0 0 chr4 99138285 99138316 -56491804 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1341 225 0 0 0 chr4 99138566 99138591 -56491529 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1341 365 295 19 0 chr4 99138664 99138769 -56491351 + MLT1J2 LTR MaLR 1 107 -341 2 1341 607 253 46 92 chr4 99139282 99139343 -56490777 + MTE2a LTR MaLR 19 80 -299 2 1341 186 43 0 0 chr4 99139343 99139366 -56490754 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 1341 1203 50 119 0 chr4 99139369 99139529 -56490591 - B2_Mm2 SINE B2 -15 180 2 2 1341 607 253 46 92 chr4 99139529 99139702 -56490418 + MTE2a LTR MaLR 81 246 -133 2 1341 455 121 0 0 chr4 99139755 99139821 -56490299 + ORR1B2 LTR MaLR 1 66 -301 2 1341 702 78 26 0 chr4 99139826 99139941 -56490179 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2 1341 369 0 0 0 chr4 99140120 99140161 -56489959 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1341 375 73 0 0 chr4 99140282 99140337 -56489783 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 2 1341 436 273 125 42 chr4 99141815 99141983 -56488137 + B3A SINE B2 1 182 -16 2 1341 281 199 0 28 chr4 99143738 99143883 -56486237 + (CA)n Simple_repeat Simple_repeat 1 141 0 2 1341 909 241 218 8 chr4 99144232 99144609 -56485511 - RMER5 LTR ERV1 -2 532 77 2 1341 573 224 87 60 chr4 99144928 99145113 -56485007 - B3A SINE B2 -5 190 1 2 1341 234 365 95 6 chr4 99145162 99145330 -56484790 - MIR SINE MIR -28 234 52 2 1341 591 256 30 0 chr4 99145709 99145842 -56484278 + ID_B1 SINE B4 82 218 -6 2 1341 268 259 113 71 chr4 99145947 99146088 -56484032 + B1F1 SINE Alu 1 147 -2 2 1341 215 189 0 0 chr4 99146099 99146136 -56483984 + ID4 SINE ID 2 38 -45 2 1341 382 229 128 24 chr4 99146538 99146663 -56483457 + B3A SINE B2 2 139 -54 2 1341 1397 161 148 98 chr4 99146705 99147071 -56483049 + ORR1C2 LTR MaLR 1 384 0 2 1341 7631 29 6 0 chr4 99147442 99148330 -56481790 - L1Md_F3 LINE L1 -36 6548 5673 2 1341 268 169 11 78 chr4 99149814 99149904 -56480216 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 2 1341 765 234 134 29 chr4 99149914 99150160 -56479960 - B4A SINE B4 -18 274 3 2 1341 887 262 13 25 chr4 99150474 99150709 -56479411 - Lx8 LINE L1 -953 6520 6289 2 1341 1469 203 146 4 chr4 99151384 99151750 -56478370 - MTD LTR MaLR -14 405 1 2 1341 409 362 26 45 chr4 99152287 99152553 -56477567 - L2b LINE L2 0 3375 3115 2 1341 467 302 196 20 chr4 99152659 99153052 -56477068 + MLT2B3 LTR ERVL 52 513 -2 2 1341 355 285 93 93 chr4 99154032 99154322 -56475798 - B4 SINE B4 0 292 3 2 1341 251 183 36 24 chr4 99154772 99154856 -56475264 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1341 186 133 0 0 chr4 99154902 99154932 -56475188 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1341 211 319 0 0 chr4 99154945 99155017 -56475103 - MIRc SINE MIR -131 137 66 2 1341 252 350 0 41 chr4 99155914 99156036 -56474084 - MIRm SINE MIR -17 259 143 2 1341 729 234 26 7 chr4 99156106 99156261 -56473859 - B3A SINE B2 -39 159 2 2 1341 349 312 125 26 chr4 99156380 99156621 -56473499 - L2a LINE L2 -261 3165 2900 2 1341 566 232 162 22 chr4 99156762 99156947 -56473173 - B3 SINE B2 -4 212 2 2 1341 287 340 10 0 chr4 99157210 99157310 -56472810 + Lx8 LINE L1 7231 7331 -142 2 1341 30 0 0 0 chr4 99157442 99157472 -56472648 + AT_rich Low_complexity Low_complexity 1 30 0 2 1341 240 35 0 0 chr4 99157591 99157620 -56472500 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1341 3547 28 0 0 chr4 99157704 99158100 -56472020 + MTA_Mm LTR MaLR 1 396 0 2 1341 575 256 50 28 chr4 99159259 99159400 -56470720 - B1_Mur1 SINE Alu 0 149 6 2 1341 283 313 0 66 chr4 99159305 99159411 -56470709 - MT2B LTR ERVL -341 260 162 2 1341 528 16 0 0 chr4 99159426 99159487 -56470633 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1341 572 291 143 36 chr4 99160941 99161276 -56468844 + L1MA7 LINE L1 5759 6129 -162 2 1341 258 274 0 0 chr4 99161422 99161506 -56468614 + L1MA7 LINE L1 6198 6281 -10 2 1341 219 335 95 17 chr4 99161775 99161980 -56468140 + MIRc SINE MIR 32 256 -12 2 1341 21 36 0 0 chr4 99162754 99162782 -56467338 + AT_rich Low_complexity Low_complexity 1 28 0 2 1341 189 196 89 0 chr4 99163737 99163793 -56466327 + MIRb SINE MIR 157 217 -51 2 1341 339 230 92 83 chr4 99163823 99163970 -56466150 - MIRb SINE MIR -101 167 15 2 1341 845 235 10 10 chr4 99164040 99164238 -56465882 + B3 SINE B2 1 198 -18 2 1341 201 188 43 14 chr4 99164759 99164829 -56465291 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1341 273 287 222 20 chr4 99165034 99165187 -56464933 + MIRb SINE MIR 50 233 -35 2 1341 515 107 12 0 chr4 99165190 99165274 -56464846 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1341 415 236 155 37 chr4 99166014 99166299 -56463821 + MER33 DNA MER1_type 3 321 -3 2 1341 467 207 7 0 chr4 99167595 99167730 -56462390 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 1341 267 286 92 37 chr4 99171263 99171372 -56458748 + MIR SINE MIR 18 132 -76 2 1341 758 182 14 21 chr4 99171426 99171560 -56458560 + B1_Mur1 SINE Alu 2 136 -13 2 1341 387 0 0 0 chr4 99171560 99171603 -56458517 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2 1341 205 188 61 20 chr4 99171845 99171894 -56458226 - L2a LINE L2 -56 3370 3320 2 1341 390 271 38 108 chr4 99172496 99172577 -56457543 + B4A SINE B4 2 88 -204 2 1341 423 0 0 0 chr4 99172577 99172624 -56457496 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1341 390 285 46 64 chr4 99172624 99172852 -56457268 + B4A SINE B4 84 276 -16 2 1341 334 274 66 0 chr4 99173246 99173360 -56456760 - PB1D7 SINE Alu 0 127 2 2 1341 1216 96 50 6 chr4 99173543 99173722 -56456398 + B2_Mm1a SINE B2 2 188 -5 2 1341 360 0 0 0 chr4 99173855 99173895 -56456225 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 2 1341 1272 166 4 13 chr4 99173967 99174193 -56455927 - URR1B DNA MER1_type 0 225 2 2 1341 367 245 44 35 chr4 99174359 99174473 -56455647 + L1ME1 LINE L1 6059 6173 -6 2 1341 223 366 48 10 chr4 99174663 99174870 -56455250 - MIRb SINE MIR -13 255 41 2 1341 1671 178 65 73 chr4 99175024 99175095 -56455025 - ORR1B2 LTR MaLR 0 367 300 2 1341 225 0 0 0 chr4 99175095 99175120 -56455000 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2 1341 967 134 75 11 chr4 99175121 99175295 -56454825 - B2_Mm2 SINE B2 -10 185 1 2 1341 1671 178 65 73 chr4 99175295 99175591 -56454529 - ORR1B2 LTR MaLR -68 299 1 2 1341 648 138 23 0 chr4 99176174 99176304 -56453816 + CT-rich Low_complexity Low_complexity 2 134 0 2 1341 235 246 33 0 chr4 99176305 99176366 -56453754 - PB1D10 SINE Alu -7 110 48 2 1341 249 108 0 0 chr4 99176399 99176436 -56453684 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2 1341 564 262 86 74 chr4 99176450 99176474 -56453646 - B4A SINE B4 0 292 270 2 1341 1131 64 25 14 chr4 99176474 99176760 -56453360 + (TG)n Simple_repeat Simple_repeat 1 289 0 2 1341 564 262 86 74 chr4 99176760 99176988 -56453132 - B4A SINE B4 -23 269 35 2 1341 888 255 121 50 chr4 99177026 99177371 -56452749 - L1MB7 LINE L1 0 6184 5828 2 1341 243 0 0 0 chr4 99177371 99177398 -56452722 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 1341 888 255 121 50 chr4 99177398 99177456 -56452664 - L1MB7 LINE L1 -357 5827 5752 2 1341 332 274 87 61 chr4 99177746 99178010 -56452110 + L1MA10 LINE L1 6064 6334 0 2 1341 636 234 29 0 chr4 99178017 99178154 -56451966 + RSINE1 SINE B4 3 143 -22 2 1341 262 301 48 10 chr4 99178924 99179028 -56451092 + LFSINE_Vert SINE SINE 344 451 -8 2 1341 338 252 112 26 chr4 99180073 99180253 -56449867 - MIRc SINE MIR -35 233 43 2 1341 585 150 0 0 chr4 99181162 99181262 -56448858 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 1341 468 0 0 0 chr4 99181749 99181801 -56448319 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1341 808 293 17 34 chr4 99182002 99182299 -56447821 - B4A SINE B4 0 292 1 2 1341 231 250 47 0 chr4 99183213 99183277 -56446843 + PB1D10 SINE Alu 2 68 -49 2 1341 237 254 15 15 chr4 99183507 99183575 -56446545 + MLT1G LTR MaLR 414 481 -110 2 1341 1133 171 34 0 chr4 99183639 99183844 -56446276 + B3 SINE B2 1 212 -4 2 1341 949 95 7 7 chr4 99183991 99184139 -56445981 + (GAA)n Simple_repeat Simple_repeat 3 150 0 2 1341 249 214 11 56 chr4 99184239 99184328 -56445792 + A-rich Low_complexity Low_complexity 3 87 0 3 1341 422 271 111 15 chr4 99184580 99184715 -56445405 + RSINE1 SINE B4 1 148 -17 3 1341 405 0 0 0 chr4 99184717 99184762 -56445358 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 3 1341 214 266 25 0 chr4 99185014 99185093 -56445027 + C-rich Low_complexity Low_complexity 1 81 0 3 1341 408 245 0 10 chr4 99185559 99185658 -56444462 + PB1D10 SINE Alu 1 98 -19 3 1341 341 246 15 0 chr4 99185676 99185741 -56444379 + ID2 SINE ID 5 70 -13 3 1341 376 243 168 22 chr4 99185871 99186056 -56444064 - B3 SINE B2 -3 213 2 3 1341 255 259 44 11 chr4 99187851 99187941 -56442179 + PB1D10 SINE Alu 2 94 -23 3 1341 230 291 0 25 chr4 99187969 99188050 -56442070 + GA-rich Low_complexity Low_complexity 2 80 0 3 1341 1087 45 6 77 chr4 99188068 99188237 -56441883 + B2_Mm1t SINE B2 2 158 -35 3 1341 514 81 333 0 chr4 99188269 99188380 -56441740 + B2_Mm2 SINE B2 47 194 -1 3 1341 261 0 0 0 chr4 99188513 99188542 -56441578 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1341 576 287 65 78 chr4 99188542 99188695 -56441425 - MER58B DNA MER1_type -37 304 149 3 1341 951 198 42 37 chr4 99188695 99188910 -56441210 + B3 SINE B2 1 216 0 3 1341 576 287 65 78 chr4 99188910 99189062 -56441058 - MER58B DNA MER1_type -193 148 3 3 1341 243 0 0 0 chr4 99189134 99189161 -56440959 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1341 423 0 0 0 chr4 99189161 99189207 -56440913 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1341 228 300 108 20 chr4 99190073 99190175 -56439945 - MIRm SINE MIR -6 270 160 3 1341 355 279 8 90 chr4 99190228 99190362 -56439758 - MIRb SINE MIR -30 238 116 3 1341 646 292 229 0 chr4 99190364 99190652 -56439468 + MTEa LTR MaLR 1 354 -25 3 1341 1867 49 0 40 chr4 99190888 99191141 -56438979 + L1Md_F2 LINE L1 6340 6582 0 3 1341 647 266 60 102 chr4 99191200 99191626 -56438494 - MTD LTR MaLR -13 406 18 3 1341 217 229 42 0 chr4 99191647 99191695 -56438425 + B4A SINE B4 39 88 -204 3 1341 180 0 0 0 chr4 99192165 99192185 -56437935 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 3 1341 613 236 20 0 chr4 99192204 99192352 -56437768 - B3A SINE B2 -21 177 27 3 1341 526 248 0 8 chr4 99193467 99193585 -56436535 - PB1D9 SINE Alu -1 119 3 3 1341 800 213 94 99 chr4 99193640 99194182 -56435938 + RMER17B LTR ERVK 1 481 -408 3 1341 832 233 119 45 chr4 99194154 99194464 -56435656 + RMER13B LTR ERVK 567 899 -9 3 1341 242 281 24 0 chr4 99194483 99194565 -56435555 - MIRb SINE MIR -8 260 177 3 1341 824 156 7 0 chr4 99194609 99194750 -56435370 - ORR1D2 LTR MaLR -228 142 1 3 1341 457 325 58 0 chr4 99194994 99195148 -56434972 + RSINE1 SINE B4 2 164 -1 3 1341 23 68 0 0 chr4 99195148 99195192 -56434928 + AT_rich Low_complexity Low_complexity 1 44 0 3 1341 326 267 74 16 chr4 99195660 99195782 -56434338 - MLT1K LTR MaLR -31 564 436 3 1341 2087 162 47 16 chr4 99197884 99198266 -56431854 - ORR1B1 LTR MaLR 0 394 1 3 1341 281 333 60 34 chr4 99198820 99198969 -56431151 + MIR SINE MIR 108 260 -2 3 1341 390 51 0 33 chr4 99199074 99199135 -56430985 + PB1D9 SINE Alu 1 59 -61 3 1341 395 0 0 162 chr4 99199137 99199694 -56430426 + (CAGAG)n Simple_repeat Simple_repeat 1 466 0 3 1341 757 20 0 39 chr4 99199697 99199801 -56430319 + B1_Mus2 SINE Alu 42 141 -6 3 1341 230 0 33 0 chr4 99199804 99199834 -56430286 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1341 362 242 62 10 chr4 99200416 99200512 -56429608 + B1F2 SINE Alu 23 123 -26 3 1341 411 271 178 14 chr4 99201344 99201557 -56428563 + Charlie4 DNA MER1_type 1 248 -1713 3 1341 243 225 112 0 chr4 99201570 99201650 -56428470 + Charlie4 DNA MER1_type 1743 1825 -136 3 1341 299 256 167 0 chr4 99201736 99201814 -56428306 + ID_B1 SINE B4 82 172 -52 3 1341 238 333 165 10 chr4 99201814 99201833 -56428287 + B1F1 SINE Alu 1 112 -37 3 1341 926 222 5 0 chr4 99202068 99202266 -56427854 - B4 SINE B4 -92 200 2 3 1341 1012 278 101 17 chr4 99202276 99202810 -56427310 - L1_Mur3 LINE L1 -1310 4570 3992 3 1341 1041 310 24 28 chr4 99202804 99203308 -56426812 - L1_Mur3 LINE L1 -2955 2925 2424 3 1341 583 328 101 19 chr4 99203376 99203643 -56426477 - B4A SINE B4 -2 290 2 3 1341 870 288 21 3 chr4 99203643 99203932 -56426188 - L1_Mur3 LINE L1 -3466 2414 2121 3 1341 1756 10 0 0 chr4 99203938 99204130 -56425990 - B2_Mm1a SINE B2 -1 192 1 3 1341 1323 98 16 0 chr4 99204840 99205024 -56425096 - B2_Mm1a SINE B2 -6 187 1 3 1341 892 304 114 39 chr4 99205024 99205744 -56424376 - L1_Rod LINE L1 -3704 2143 1370 3 1341 1214 62 0 0 chr4 99205819 99205965 -56424155 + B1_Mus2 SINE Alu 1 146 -1 3 1341 203 0 0 36 chr4 99205965 99205993 -56424127 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 3 1341 306 164 60 0 chr4 99205993 99206060 -56424060 + B4 SINE B4 215 285 -7 3 1341 208 290 0 0 chr4 99206072 99206134 -56423986 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1341 311 238 0 0 chr4 99206246 99206315 -56423805 - ID4_ SINE ID -82 70 2 3 1341 930 237 24 5 chr4 99206482 99206690 -56423430 + B3 SINE B2 1 212 -4 3 1341 1094 52 37 0 chr4 99206696 99206832 -56423288 + B1_Mus1 SINE Alu 3 143 -5 3 1341 180 0 0 0 chr4 99207462 99207482 -56422638 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 3 1341 1091 103 0 0 chr4 99207496 99207641 -56422479 - B1_Mus1 SINE Alu -2 146 2 3 1341 1322 211 104 29 chr4 99207980 99208326 -56421794 - ORR1D1 LTR MaLR -1 373 2 3 1341 387 281 247 13 chr4 99208559 99208620 -56421500 - Charlie1a DNA MER1_type -1140 315 236 3 1341 183 80 0 0 chr4 99208620 99208645 -56421475 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 1341 387 281 247 13 chr4 99208645 99208810 -56421310 - Charlie1a DNA MER1_type -1220 235 36 3 1341 638 251 97 5 chr4 99209469 99209666 -56420454 - B3A SINE B2 -7 209 1 3 1341 308 233 93 0 chr4 99210060 99210146 -56419974 - B1F SINE Alu -21 128 35 3 1341 573 270 121 7 chr4 99211358 99211507 -56418613 + B3A SINE B2 1 166 -32 3 1341 606 281 20 0 chr4 99211533 99211686 -56418434 - RSINE1 SINE B4 -7 158 3 3 1341 230 73 0 24 chr4 99212972 99213014 -56417106 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1341 823 205 174 5 chr4 99213014 99213210 -56416910 - Lx5 LINE L1 -10 7040 6812 3 1341 198 239 0 0 chr4 99213250 99213296 -56416824 + MIRb SINE MIR 40 85 -183 3 1341 753 191 101 7 chr4 99213929 99214077 -56416043 - RSINE1 SINE B4 0 165 4 3 1341 347 253 109 13 chr4 99214224 99214380 -56415740 + MER34 LTR ERV1 372 542 0 3 1341 374 224 26 0 chr4 99214486 99214562 -56415558 + PB1D10 SINE Alu 40 117 0 3 1341 3524 23 5 0 chr4 99214859 99215253 -56414867 + MTA_Mm LTR MaLR 1 396 0 3 1341 207 0 0 0 chr4 99215616 99215639 -56414481 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1341 664 278 161 6 chr4 99215682 99216011 -56414109 + MLT1B LTR MaLR 4 383 -7 3 1341 605 180 0 9 chr4 99217077 99217189 -56412931 - MTC LTR MaLR -2 419 309 3 1341 249 310 90 0 chr4 99217205 99217305 -56412815 - MER102a DNA MER1_type -150 180 72 3 1341 198 0 0 0 chr4 99218168 99218190 -56411930 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1341 383 235 8 50 chr4 99218478 99218599 -56411521 - PB1D9 SINE Alu 0 120 5 3 1341 348 154 282 0 chr4 99218934 99219012 -56411108 + URR1A DNA MER1_type 1 100 -126 3 1341 813 250 89 24 chr4 99219373 99219619 -56410501 + ORR1D2 LTR MaLR 103 364 -6 3 1341 504 273 26 60 chr4 99219837 99219856 -56410264 + L1MA7 LINE L1 5255 5273 -898 3 1341 726 219 15 0 chr4 99219856 99219993 -56410127 + B1_Mur1 SINE Alu 1 139 -10 3 1341 638 236 40 18 chr4 99219993 99220215 -56409905 + L1MA7 LINE L1 5274 5490 -801 3 1341 1624 50 0 0 chr4 99220215 99220414 -56409706 + L1Md_T LINE L1 6384 6582 0 3 1341 638 232 42 14 chr4 99220414 99220426 -56409694 + L1MA7 LINE L1 5491 5501 -790 3 1341 373 233 78 0 chr4 99220430 99220520 -56409600 + PB1D10 SINE Alu 7 103 -14 3 1341 480 111 0 0 chr4 99220520 99220592 -56409528 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1341 437 277 37 56 chr4 99220593 99220807 -56409313 + L1MA7 LINE L1 5490 5699 -592 3 1341 223 226 35 23 chr4 99220830 99220916 -56409204 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1341 940 241 24 10 chr4 99220916 99221121 -56408999 - B3 SINE B2 -8 208 1 3 1341 282 276 0 0 chr4 99221176 99221234 -56408886 + B1F2 SINE Alu 1 58 -91 3 1341 260 122 41 0 chr4 99221256 99221305 -56408815 + G-rich Low_complexity Low_complexity 6 56 0 3 167 546 247 196 24 chr4 99221327 99221696 -56408424 + L1MA7 LINE L1 5766 6198 -93 3 1342 227 146 0 0 chr4 99222489 99222530 -56407590 + ID SINE ID 3 43 -181 3 1342 215 328 0 0 chr4 99222540 99222601 -56407519 + PB1D7 SINE Alu 1 61 -59 3 1342 417 198 0 0 chr4 99222629 99222715 -56407405 + GA-rich Low_complexity Low_complexity 4 89 0 3 1342 921 146 0 22 chr4 99222716 99222830 -56407290 + polypurine Low_complexity Low_complexity 3 114 0 3 1342 1103 119 0 6 chr4 99222830 99223007 -56407113 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 3 1342 921 146 0 22 chr4 99223007 99223074 -56407046 + polypurine Low_complexity Low_complexity 115 180 0 3 1342 233 308 39 70 chr4 99223188 99223317 -56406803 - MER34 LTR ERV1 -80 462 338 3 1342 423 0 0 0 chr4 99223604 99223651 -56406469 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1342 257 243 28 14 chr4 99223799 99223870 -56406250 + MER5A DNA MER1_type 1 72 -117 3 1342 578 246 113 23 chr4 99223997 99224263 -56405857 + L1MC5 LINE L1 7418 7707 -254 3 1342 272 189 38 0 chr4 99224334 99224387 -56405733 - ID4 SINE ID -17 66 12 3 1342 252 246 0 0 chr4 99225033 99225098 -56405022 + Lx7 LINE L1 7620 7684 -12 3 1342 824 187 0 0 chr4 99225104 99225243 -56404877 + B1_Mus1 SINE Alu 8 146 -2 4 1342 453 36 0 0 chr4 99225243 99225298 -56404822 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 4 1342 1455 39 0 0 chr4 99225298 99225476 -56404644 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 4 1342 206 62 31 0 chr4 99225485 99225517 -56404603 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 4 1342 312 27 0 0 chr4 99225555 99225592 -56404528 + (GAAAA)n Simple_repeat Simple_repeat 5 41 0 4 1342 200 272 58 10 chr4 99225622 99225726 -56404394 - L2a LINE L2 -304 3122 3014 4 1342 893 206 29 14 chr4 99225988 99226195 -56403925 - B3 SINE B2 -6 210 1 4 1342 335 236 52 0 chr4 99226362 99226452 -56403668 + ID_B1 SINE B4 83 172 -52 4 1342 334 282 78 0 chr4 99226369 99226472 -56403648 + PB1D10 SINE Alu 7 117 0 4 1342 342 304 10 10 chr4 99226820 99226923 -56403197 - PB1D10 SINE Alu -5 112 10 4 1342 414 0 0 0 chr4 99227073 99227119 -56403001 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1342 21 0 0 0 chr4 99227788 99227809 -56402311 + GC_rich Low_complexity Low_complexity 1 21 0 4 1342 188 259 17 17 chr4 99228213 99228272 -56401848 + MIRb SINE MIR 202 260 -8 4 1342 1135 199 38 140 chr4 99229646 99230089 -56400031 - RMER10B LTR ERVL 0 398 1 4 1342 397 294 46 0 chr4 99230242 99230351 -56399769 - ID_B1 SINE B4 -21 203 90 4 1342 2467 68 19 0 chr4 99230352 99230675 -56399445 + ORR1A4 LTR MaLR 1 329 0 4 1342 497 148 46 0 chr4 99230684 99230792 -56399328 + RLTR15 LTR ERVK 6 118 -241 4 1342 1173 56 14 0 chr4 99230792 99230936 -56399184 + B1_Mm SINE Alu 2 147 0 4 1342 465 133 0 0 chr4 99230937 99231012 -56399108 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 4 1342 1278 173 0 4 chr4 99231012 99231261 -56398859 + RLTR15 LTR ERVK 99 346 -13 4 1342 1105 90 92 38 chr4 99231284 99231469 -56398651 - B2_Mm2 SINE B2 0 195 1 4 1342 320 260 51 13 chr4 99231477 99231555 -56398565 - ID4_ SINE ID -2 81 1 4 1342 222 111 0 0 chr4 99233264 99233278 -56396842 + (A)n Simple_repeat Simple_repeat 1 14 0 4 1342 1013 103 14 0 chr4 99233278 99233423 -56396697 + B1_Mus2 SINE Alu 1 147 0 4 1342 222 111 0 0 chr4 99233423 99233444 -56396676 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1342 246 274 54 14 chr4 99233526 99233600 -56396520 + ID_B1 SINE B4 78 154 -70 4 1342 472 300 64 0 chr4 99233603 99233743 -56396377 + RSINE1 SINE B4 3 151 -14 4 1342 270 0 0 0 chr4 99233747 99233777 -56396343 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1342 21 0 0 0 chr4 99233786 99233807 -56396313 + AT_rich Low_complexity Low_complexity 1 21 0 4 1342 406 235 0 0 chr4 99233807 99233888 -56396232 + ID_B1 SINE B4 144 224 0 4 1342 317 179 12 0 chr4 99233888 99233972 -56396148 + GA-rich Low_complexity Low_complexity 3 87 0 4 1342 243 0 0 0 chr4 99233993 99234020 -56396100 + (GGGGA)n Simple_repeat Simple_repeat 1 27 0 4 1342 250 356 130 14 chr4 99234274 99234482 -56395638 - L2 LINE L2 -492 2927 2696 4 1342 374 266 38 38 chr4 99234771 99234904 -56395216 - MIRc SINE MIR -80 188 56 4 1342 728 251 32 21 chr4 99235215 99235402 -56394718 + B3A SINE B2 1 189 -9 4 1342 800 170 44 44 chr4 99235425 99235585 -56394535 + B3 SINE B2 3 162 -54 4 1342 385 245 85 0 chr4 99235855 99235961 -56394159 + MTE2a LTR MaLR 199 313 -66 4 1342 1399 120 282 0 chr4 99235995 99236236 -56393884 - RLTR27 LTR ERVK 0 309 1 4 1342 236 319 151 9 chr4 99236444 99236596 -56393524 - Arthur1B DNA Tip100 -11 166 1 4 1342 201 94 0 0 chr4 99236968 99237000 -56393120 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1342 297 232 89 97 chr4 99237003 99237127 -56392993 + RSINE1 SINE B4 2 124 -41 4 1342 309 26 0 0 chr4 99237127 99237165 -56392955 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1342 329 247 26 0 chr4 99237525 99237602 -56392518 - B1_Mur3 SINE Alu -69 80 2 4 1342 189 0 0 0 chr4 99237973 99237994 -56392126 + (GA)n Simple_repeat Simple_repeat 1 21 0 4 1342 496 347 82 77 chr4 99238093 99238546 -56391574 - MLT1D LTR MaLR -46 459 5 4 1342 21 0 0 0 chr4 99240536 99240557 -56389563 + AT_rich Low_complexity Low_complexity 1 21 0 4 1342 329 0 0 24 chr4 99241397 99241439 -56388681 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1342 256 172 30 30 chr4 99242800 99242866 -56387254 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1342 351 0 0 0 chr4 99243215 99243254 -56386866 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1342 538 237 0 25 chr4 99243792 99243913 -56386207 - RSINE1 SINE B4 -44 121 4 4 1342 588 193 0 0 chr4 99243963 99244082 -56386038 + CT-rich Low_complexity Low_complexity 4 122 0 4 1342 207 0 0 0 chr4 99244097 99244120 -56386000 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1342 870 99 0 15 chr4 99244120 99244253 -56385867 - B1_Mus2 SINE Alu -1 146 16 4 1342 299 342 26 0 chr4 99244404 99244521 -56385599 + B1F1 SINE Alu 1 120 -29 4 1342 349 276 20 10 chr4 99244724 99244823 -56385297 + PB1D10 SINE Alu 11 110 -7 4 1342 390 227 61 35 chr4 99245187 99245301 -56384819 + PB1D10 SINE Alu 1 117 0 4 1342 261 324 80 51 chr4 99245477 99245676 -56384444 + L2a LINE L2 3178 3426 0 4 1342 488 261 122 75 chr4 99245809 99245834 -56384286 - B4 SINE B4 0 292 275 4 1342 828 129 0 0 chr4 99245834 99245981 -56384139 + (TG)n Simple_repeat Simple_repeat 1 147 0 4 1342 488 261 122 75 chr4 99245981 99246233 -56383887 - B4 SINE B4 -18 274 2 4 1342 2115 40 0 0 chr4 99246239 99246488 -56383632 - L1Md_T LINE L1 -1 6581 6333 4 1342 442 247 10 0 chr4 99246633 99246730 -56383390 + PB1D7 SINE Alu 21 118 -2 4 1342 639 313 42 0 chr4 99246803 99247017 -56383103 + ID_B1 SINE B4 1 223 -1 4 1342 775 308 10 0 chr4 99247248 99247446 -56382674 - B4 SINE B4 -2 290 91 4 1342 334 248 43 0 chr4 99247446 99247555 -56382565 - B3 SINE B2 -74 121 1 4 1342 451 238 81 16 chr4 99248051 99248175 -56381945 + B1F2 SINE Alu 17 148 -1 4 1342 1253 51 11 11 chr4 99249231 99249411 -56380709 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1342 444 37 0 0 chr4 99249411 99249465 -56380655 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 4 1342 782 279 34 0 chr4 99249477 99249685 -56380435 - B3 SINE B2 -1 215 1 4 1342 819 163 74 0 chr4 99249702 99249837 -56380283 - B1_Mur3 SINE Alu 0 149 5 4 1342 888 238 9 32 chr4 99249845 99250062 -56380058 - B3 SINE B2 -3 213 2 4 1342 450 248 62 0 chr4 99250991 99251120 -56379000 - MTD LTR MaLR -5 414 278 4 1342 640 240 64 35 chr4 99251138 99251341 -56378779 - MTD LTR MaLR -210 209 1 4 1342 506 338 78 5 chr4 99251499 99251704 -56378416 - ID_B1 SINE B4 -4 220 1 4 1342 409 311 25 0 chr4 99252064 99252186 -56377934 + RSINE1 SINE B4 5 129 -36 4 1342 768 182 41 20 chr4 99252643 99252789 -56377331 + B1_Mur2 SINE Alu 1 149 0 4 1342 508 222 28 0 chr4 99252985 99253093 -56377027 + B1_Mus1 SINE Alu 35 145 -3 4 1342 495 0 0 0 chr4 99253854 99253909 -56376211 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1342 2791 244 111 26 chr4 99254221 99254781 -56375339 - Lx8 LINE L1 -202 7271 6660 4 1342 3287 53 5 2 chr4 99254781 99255180 -56374940 - MTB LTR MaLR 0 400 1 4 1342 2791 244 111 26 chr4 99255180 99255412 -56374708 - Lx8 LINE L1 -814 6659 6412 4 1342 312 280 0 51 chr4 99255479 99255577 -56374543 - B4A SINE B4 -152 140 48 4 1342 447 197 8 100 chr4 99255880 99256010 -56374110 + PB1D7 SINE Alu 1 118 -2 4 1342 639 199 11 85 chr4 99256159 99256335 -56373785 + RSINE1 SINE B4 3 165 0 4 1342 249 237 40 0 chr4 99257097 99257173 -56372947 - RMER15 LTR ERVL -93 482 404 4 1342 206 259 145 33 chr4 99257540 99257692 -56372428 + L2a LINE L2 3242 3410 -16 4 1342 275 364 0 10 chr4 99257787 99257887 -56372233 + L2b LINE L2 3277 3375 0 4 1342 254 284 73 18 chr4 99258004 99258143 -56371977 + MIRb SINE MIR 81 233 -35 4 1342 933 234 21 66 chr4 99258708 99258951 -56371169 - B4A SINE B4 -59 233 2 4 1342 234 318 108 0 chr4 99259396 99259524 -56370596 + PB1D7 SINE Alu 5 148 -1 4 1342 1653 26 5 0 chr4 99259575 99259767 -56370353 + B2_Mm1t SINE B2 1 193 0 4 1342 959 144 0 7 chr4 99259829 99259976 -56370144 + B1_Mus2 SINE Alu 1 146 -1 4 1342 1005 9 0 0 chr4 99259997 99260111 -56370009 + (GGAAA)n Simple_repeat Simple_repeat 1 114 0 4 1342 631 268 59 0 chr4 99260420 99260573 -56369547 + B3 SINE B2 2 163 -53 4 1342 351 0 0 0 chr4 99260618 99260657 -56369463 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1342 255 321 195 0 chr4 99260683 99260842 -56369278 - L1M3 LINE L1 -1462 4678 4489 4 1342 226 233 50 0 chr4 99260900 99260960 -56369160 - L1M3 LINE L1 -1785 4361 4299 4 1342 1551 62 0 5 chr4 99261136 99261330 -56368790 + B2_Mm2 SINE B2 2 194 -1 4 1342 757 256 163 8 chr4 99261390 99261642 -56368478 + MTD LTR MaLR 117 407 -12 4 1342 303 338 92 6 chr4 99262108 99262272 -56367848 + 7SK RNA RNA 17 194 -137 4 1342 368 305 168 0 chr4 99262783 99262914 -56367206 + RSINE1 SINE B4 11 163 -2 4 1342 278 266 53 11 chr4 99263250 99263345 -56366775 - Charlie18a DNA MER1_type -195 147 49 4 1342 511 301 35 0 chr4 99263672 99263815 -56366305 + RSINE1 SINE B4 1 148 -17 4 1342 32 57 0 0 chr4 99263824 99263877 -56366243 + AT_rich Low_complexity Low_complexity 1 53 0 4 1342 333 47 0 0 chr4 99264451 99264494 -56365626 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 4 1342 461 295 35 24 chr4 99265193 99265363 -56364757 - MLT1A1 LTR MaLR 0 408 237 4 1342 240 35 0 0 chr4 99265770 99265799 -56364321 + (TTG)n Simple_repeat Simple_repeat 3 31 0 4 1342 406 256 179 0 chr4 99265912 99266029 -56364091 + ID_B1 SINE B4 87 224 0 5 1342 334 307 77 42 chr4 99266031 99266174 -56363946 + RSINE1 SINE B4 3 150 -15 5 1342 432 0 0 0 chr4 99266180 99266228 -56363892 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1342 868 211 58 19 chr4 99266269 99266477 -56363643 + B3 SINE B2 1 216 0 5 1342 230 329 0 0 chr4 99267467 99267546 -56362574 - MIRb SINE MIR -8 260 182 5 1342 415 321 7 76 chr4 99269154 99269299 -56360821 + RSINE1 SINE B4 2 136 -29 5 1342 25 51 0 0 chr4 99269303 99269342 -56360778 + AT_rich Low_complexity Low_complexity 1 39 0 5 1342 384 309 58 0 chr4 99269627 99269766 -56360354 + B1F2 SINE Alu 1 147 -2 5 1342 300 264 34 11 chr4 99269766 99269854 -56360266 + GA-rich Low_complexity Low_complexity 1 90 0 5 1342 241 208 28 0 chr4 99270136 99270208 -56359912 + GA-rich Low_complexity Low_complexity 2 75 0 5 1342 733 208 56 62 chr4 99270217 99270412 -56359708 + B3A SINE B2 2 195 -3 5 1342 1414 94 5 0 chr4 99270440 99270631 -56359489 + B2_Mm1a SINE B2 2 193 0 5 1342 23 0 0 0 chr4 99270649 99270672 -56359448 + AT_rich Low_complexity Low_complexity 1 23 0 5 1342 1149 44 0 0 chr4 99270695 99270830 -56359290 + B1_Mus1 SINE Alu 2 136 -12 5 1342 468 0 0 0 chr4 99270924 99270976 -56359144 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1342 336 200 100 0 chr4 99270999 99271069 -56359051 - RSINE1 SINE B4 -86 79 3 5 1342 300 27 0 0 chr4 99271722 99271759 -56358361 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1342 395 312 35 42 chr4 99271763 99271907 -56358213 - RSINE1 SINE B4 -12 153 11 5 1342 303 354 8 50 chr4 99271951 99272070 -56358050 + B3A SINE B2 67 182 -16 5 1342 1268 81 28 17 chr4 99272088 99272265 -56357855 + B2_Mm1t SINE B2 1 179 -14 5 1342 333 76 295 74 chr4 99272297 99272419 -56357701 + B2_Mm2 SINE B2 47 195 0 5 1342 305 47 0 0 chr4 99272470 99272513 -56357607 - MT2A LTR ERVL -2 531 489 5 1342 912 243 19 5 chr4 99272514 99272721 -56357399 - MT2A LTR ERVL -237 296 87 5 1342 607 198 8 16 chr4 99272726 99272849 -56357271 + B1_Mus1 SINE Alu 18 139 -9 5 1342 505 136 0 33 chr4 99272868 99272959 -56357161 - MT2A LTR ERVL -445 88 1 5 1342 650 257 94 111 chr4 99273053 99273403 -56356717 + MLT1A LTR MaLR 7 350 -24 5 1342 473 47 0 15 chr4 99273671 99273736 -56356384 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1342 21 36 0 0 chr4 99273897 99273925 -56356195 + AT_rich Low_complexity Low_complexity 1 28 0 5 1342 404 303 20 60 chr4 99273933 99274084 -56356036 + RSINE1 SINE B4 4 148 -17 5 1342 324 197 14 0 chr4 99274324 99274395 -56355725 + B1_Mur2 SINE Alu 78 149 0 5 1342 26 50 0 0 chr4 99274397 99274437 -56355683 + AT_rich Low_complexity Low_complexity 1 40 0 5 1342 180 295 66 0 chr4 99275501 99275562 -56354558 + L2c LINE L2 3248 3312 -75 5 1342 184 280 102 74 chr4 99275605 99275713 -56354407 + L2b LINE L2 3254 3364 -11 5 1342 329 316 43 9 chr4 99275753 99275868 -56354252 + RSINE1 SINE B4 45 163 -2 5 1342 21 36 0 0 chr4 99275888 99275916 -56354204 + AT_rich Low_complexity Low_complexity 1 28 0 5 1342 960 123 13 20 chr4 99275935 99276084 -56354036 - B1_Mur3 SINE Alu -1 148 1 5 1342 1873 184 41 20 chr4 99276108 99276502 -56353618 - MTD LTR MaLR 0 419 18 5 1342 568 240 16 8 chr4 99277415 99277541 -56352579 + RSINE1 SINE B4 3 129 -36 5 1342 576 65 0 0 chr4 99277561 99277638 -56352482 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1342 723 264 0 47 chr4 99278130 99278321 -56351799 + B3A SINE B2 3 184 -14 5 1342 396 369 15 8 chr4 99278419 99278553 -56351567 + B1F1 SINE Alu 1 135 -14 5 1342 364 206 0 16 chr4 99278563 99278691 -56351429 + (TG)n Simple_repeat Simple_repeat 1 126 0 5 1342 389 196 14 27 chr4 99278734 99278881 -56351239 + (TG)n Simple_repeat Simple_repeat 1 145 0 5 1342 286 238 0 16 chr4 99280088 99280152 -56349968 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 5 1342 244 331 124 0 chr4 99280673 99280794 -56349326 - MIRc SINE MIR -131 137 2 5 1342 696 174 17 0 chr4 99280984 99281099 -56349021 - B1_Mur2 SINE Alu -32 117 1 5 1342 501 250 13 119 chr4 99280990 99281119 -56349001 - ID_B1 SINE B4 -35 189 76 5 1342 180 0 0 0 chr4 99281119 99281139 -56348981 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 5 1342 501 256 72 96 chr4 99281139 99281195 -56348925 - ID SINE ID -149 75 3 5 1342 189 262 0 23 chr4 99281198 99281241 -56348879 + MIR SINE MIR 82 123 -85 5 1342 812 107 120 15 chr4 99281445 99281578 -56348542 - B1_Mus2 SINE Alu 0 147 1 5 1342 473 269 75 7 chr4 99281989 99282135 -56347985 + RSINE1 SINE B4 4 159 -6 5 1342 27 29 0 0 chr4 99283267 99283301 -56346819 + AT_rich Low_complexity Low_complexity 1 34 0 5 1342 224 232 0 0 chr4 99283301 99283357 -56346763 + A-rich Low_complexity Low_complexity 1 56 0 5 1342 255 222 0 0 chr4 99283555 99283600 -56346520 + ID4_ SINE ID 36 80 -3 5 1342 681 13 0 0 chr4 99284061 99284139 -56345981 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1342 277 229 128 56 chr4 99284249 99284346 -56345774 + PB1D10 SINE Alu 14 110 -7 5 1342 704 201 134 40 chr4 99284346 99284548 -56345572 + ID_B1 SINE B4 1 221 -3 5 1342 536 299 102 58 chr4 99285354 99285687 -56344433 - ORR1E LTR MaLR -12 367 3 5 1342 210 294 176 0 chr4 99285841 99285909 -56344211 + ID_B1 SINE B4 85 164 -60 5 1342 363 308 166 51 chr4 99285910 99286020 -56344100 + B4 SINE B4 1 198 -94 5 1342 457 214 41 0 chr4 99286020 99286118 -56344002 + B1_Mus2 SINE Alu 46 147 0 5 1342 363 308 166 51 chr4 99286118 99286163 -56343957 + B4 SINE B4 199 282 -10 5 1342 378 0 0 0 chr4 99286187 99286229 -56343891 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1342 459 0 0 0 chr4 99286276 99286327 -56343793 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1342 646 275 12 59 chr4 99286334 99286504 -56343616 + RSINE1 SINE B4 4 165 0 5 1342 378 276 11 0 chr4 99286574 99286661 -56343459 + PB1D10 SINE Alu 25 112 -5 5 1342 900 204 118 0 chr4 99286926 99287112 -56343008 + B3 SINE B2 3 210 -6 5 1342 297 169 36 0 chr4 99287132 99287215 -56342905 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1342 360 0 0 0 chr4 99288345 99288385 -56341735 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1342 225 0 0 0 chr4 99288385 99288409 -56341711 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1342 495 233 24 40 chr4 99288583 99288708 -56341412 - B1F SINE Alu -10 139 17 5 1342 786 180 234 0 chr4 99289015 99289182 -56340938 + B3 SINE B2 1 206 -10 5 1342 494 191 74 50 chr4 99289750 99289871 -56340249 + RSINE1 SINE B4 5 128 -37 5 1342 432 86 0 0 chr4 99289884 99289954 -56340166 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1342 321 26 0 0 chr4 99289955 99289993 -56340127 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1342 225 183 0 0 chr4 99290101 99290161 -56339959 + T-rich Low_complexity Low_complexity 2 61 0 5 1342 818 167 40 27 chr4 99290162 99290176 -56339944 - B1_Mur4 SINE Alu 0 150 140 5 1342 213 39 0 0 chr4 99290176 99290202 -56339918 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1342 818 167 40 27 chr4 99290202 99290335 -56339785 - B1_Mur4 SINE Alu -11 139 1 5 1342 425 216 243 0 chr4 99290520 99290631 -56339489 + ID_B1 SINE B4 77 214 -10 5 1342 22 0 0 0 chr4 99292471 99292493 -56337627 + AT_rich Low_complexity Low_complexity 1 22 0 5 1342 303 28 0 0 chr4 99293147 99293183 -56336937 + (C)n Simple_repeat Simple_repeat 1 36 0 5 1342 358 324 122 0 chr4 99294323 99294462 -56335658 + RSINE1 SINE B4 10 165 0 5 1342 260 203 98 65 chr4 99294415 99294568 -56335552 + RLTR40 LTR ERVK 558 715 -102 5 1342 763 231 9 156 chr4 99294570 99294898 -56335222 - L1_Rod LINE L1 -2765 3082 2803 5 1342 242 247 56 90 chr4 99294919 99295008 -56335112 + 4.5SRNA scRNA scRNA 1 86 -8 5 1342 977 123 0 0 chr4 99294928 99295066 -56335054 + B1_Mus1 SINE Alu 11 148 0 5 1342 1893 242 22 55 chr4 99295081 99295326 -56334794 - L1_Rod LINE L1 -3363 2783 2543 5 1342 1515 58 27 0 chr4 99295326 99295514 -56334606 + B2_Mm1t SINE B2 1 193 0 5 1342 1893 239 18 56 chr4 99295514 99295843 -56334277 - L1_Rod LINE L1 -3305 2542 2222 5 1342 622 286 19 19 chr4 99295896 99296103 -56334017 - B3 SINE B2 -9 207 1 5 1342 251 285 110 42 chr4 99296197 99296300 -56333820 - B1F1 SINE Alu -1 119 17 5 1342 498 192 19 52 chr4 99296309 99296436 -56333684 - PB1D10 SINE Alu -22 128 9 5 1342 230 351 119 65 chr4 99296320 99296521 -56333599 - B4 SINE B4 -64 228 17 5 1342 356 215 0 15 chr4 99296487 99296553 -56333567 + PB1D10 SINE Alu 18 82 -35 5 1342 839 173 8 0 chr4 99296563 99296696 -56333424 + B1_Mur2 SINE Alu 10 143 -6 5 1342 225 304 54 92 chr4 99296574 99296759 -56333361 - YREP_Mm Unknown Unknown -1516 296 119 5 1342 314 268 33 53 chr4 99296759 99296909 -56333211 + L1MEc LINE L1 2064 2210 -4190 5 1342 288 279 0 0 chr4 99296946 99297007 -56333113 + PB1D10 SINE Alu 49 109 -8 5 1342 230 292 42 73 chr4 99297035 99297131 -56332989 + B1_Mur1 SINE Alu 47 139 -10 5 1342 478 301 14 75 chr4 99297169 99297316 -56332804 + RSINE1 SINE B4 2 139 -26 5 1342 1278 94 0 0 chr4 99297317 99297876 -56332244 + (CA)n Simple_repeat Simple_repeat 1 559 0 5 1342 513 275 24 48 chr4 99298027 99298195 -56331925 + RSINE1 SINE B4 1 164 -1 5 1342 938 76 130 0 chr4 99298235 99298366 -56331754 + B1_Mus1 SINE Alu 1 148 0 5 1342 432 161 0 82 chr4 99298376 99298498 -56331622 + L1Md_F2 LINE L1 6471 6582 0 5 1342 1471 181 148 0 chr4 99298526 99298863 -56331257 - MTD LTR MaLR -12 407 21 5 1342 967 109 6 6 chr4 99298863 99299020 -56331100 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 5 1342 1284 7 0 0 chr4 99299025 99299170 -56330950 + (GGAGA)n Simple_repeat Simple_repeat 2 146 0 6 1342 278 309 9 52 chr4 99299182 99299231 -56330889 + PB1D10 SINE Alu 5 52 -65 6 1342 1588 47 5 0 chr4 99299231 99299423 -56330697 + B2_Mm1a SINE B2 1 193 0 6 1342 278 309 9 52 chr4 99299423 99299489 -56330631 + PB1D10 SINE Alu 53 115 -2 6 1342 697 236 139 16 chr4 99299561 99299755 -56330365 + B3 SINE B2 16 210 -6 6 1342 371 279 135 0 chr4 99299755 99299859 -56330261 + L1MEc LINE L1 2441 2558 -3761 5 1342 207 105 0 26 chr4 99299859 99299898 -56330222 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 6 1342 1246 118 18 66 chr4 99299939 99300165 -56329955 + MTA_Mm LTR MaLR 1 215 -181 6 1342 624 251 73 0 chr4 99300168 99300213 -56329907 + Lx5 LINE L1 6695 6743 -717 6 1342 198 0 0 0 chr4 99300213 99300235 -56329885 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1342 1724 238 14 11 chr4 99300235 99300617 -56329503 + Lx5 LINE L1 6456 6885 -575 6 1342 487 336 0 21 chr4 99300699 99300842 -56329278 - ID_B1 SINE B4 -1 223 84 6 1342 561 267 13 20 chr4 99300849 99300998 -56329122 - B1F1 SINE Alu 0 149 2 6 1342 298 203 27 55 chr4 99301047 99301120 -56329000 + B1F2 SINE Alu 6 76 -73 6 1342 345 100 0 0 chr4 99301120 99301170 -56328950 + (GGA)n Simple_repeat Simple_repeat 3 52 0 6 1342 451 339 6 6 chr4 99301281 99301456 -56328664 + (CGA)n Simple_repeat Simple_repeat 2 176 0 6 1342 210 291 86 25 chr4 99301513 99301594 -56328526 - B1_Mus1 SINE Alu -58 90 5 6 1342 345 290 9 0 chr4 99301600 99301707 -56328413 + L1M2 LINE L1 2244 2351 -3792 6 1342 337 336 64 0 chr4 99301707 99301832 -56328288 + RSINE1 SINE B4 21 153 -12 6 1342 349 166 0 2 chr4 99301861 99301921 -56328199 + B3A SINE B2 5 63 -132 6 1342 860 237 50 10 chr4 99301929 99302108 -56328012 + B3 SINE B2 9 193 -23 6 1342 1232 47 0 0 chr4 99302108 99302256 -56327864 + B1_Mus1 SINE Alu 1 148 0 6 1342 860 237 50 10 chr4 99302256 99302276 -56327844 + B3 SINE B2 194 216 0 6 1342 593 293 22 22 chr4 99302336 99302514 -56327606 + B3A SINE B2 5 182 -16 6 1342 343 246 111 60 chr4 99302858 99302975 -56327145 + ID_B1 SINE B4 102 224 0 6 1342 201 59 0 81 chr4 99303276 99303313 -56326807 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 6 1342 721 152 128 8 chr4 99303316 99303449 -56326671 - B1_Mur4 SINE Alu 0 150 2 6 1342 184 343 18 81 chr4 99304151 99304262 -56325858 + L2c LINE L2 3070 3173 -214 6 1342 450 49 0 0 chr4 99304314 99304375 -56325745 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1342 332 211 53 0 chr4 99304459 99304516 -56325604 - B3 SINE B2 -152 64 5 6 1342 404 37 19 0 chr4 99304521 99304575 -56325545 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1342 261 0 0 0 chr4 99304575 99304604 -56325516 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 6 1342 324 211 253 11 chr4 99304607 99304698 -56325422 - ID_B1 SINE B4 -7 217 105 6 1342 236 239 87 115 chr4 99304698 99304711 -56325409 - PB1D7 SINE Alu -7 113 13 6 1342 292 219 16 0 chr4 99304894 99304958 -56325162 + RSINE1 SINE B4 65 129 -36 6 1342 210 71 0 0 chr4 99304974 99305002 -56325118 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1342 266 234 0 0 chr4 99305051 99305098 -56325022 + B3A SINE B2 7 53 -145 6 1342 566 275 135 60 chr4 99305180 99305271 -56324849 + L1MC1 LINE L1 5943 6026 -307 6 1342 1120 92 0 0 chr4 99305271 99305412 -56324708 + B1_Mus2 SINE Alu 1 141 -6 6 1342 414 0 0 0 chr4 99305413 99305459 -56324661 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1342 566 275 135 60 chr4 99305459 99305729 -56324391 + L1MC1 LINE L1 6027 6333 0 6 1342 948 227 242 7 chr4 99306180 99306477 -56323643 - ORR1D2 LTR MaLR 0 370 4 6 1342 266 239 143 33 chr4 99306672 99306763 -56323357 + B1_Mur1 SINE Alu 40 140 -9 6 1342 336 48 0 0 chr4 99306814 99306856 -56323264 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1342 529 294 17 8 chr4 99306858 99306978 -56323142 - RSINE1 SINE B4 -44 121 1 6 1342 456 237 63 49 chr4 99306985 99307127 -56322993 - B1F1 SINE Alu -5 144 1 6 1342 33 25 0 0 chr4 99307132 99307172 -56322948 + AT_rich Low_complexity Low_complexity 1 40 0 6 1342 555 206 49 0 chr4 99307229 99307331 -56322789 - B1_Mur2 SINE Alu -35 114 8 6 1342 519 69 0 0 chr4 99307338 99307410 -56322710 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1342 404 205 0 0 chr4 99307421 99307499 -56322621 - B3A SINE B2 -116 82 5 6 1342 1096 48 0 110 chr4 99307559 99307723 -56322397 + B1_Mm SINE Alu 2 147 0 6 1342 333 0 0 0 chr4 99307844 99307881 -56322239 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 6 1342 595 291 7 15 chr4 99307904 99308064 -56322056 + ID_B1 SINE B4 86 245 -47 6 1342 189 0 0 0 chr4 99309234 99309255 -56320865 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1342 588 147 59 0 chr4 99309603 99309705 -56320415 + B1_Mur3 SINE Alu 42 149 0 6 1342 233 276 49 73 chr4 99309819 99309901 -56320219 - MLT1F-int LTR MaLR -75 1414 1335 6 1342 1187 63 0 0 chr4 99310021 99310164 -56319956 + B1_Mus2 SINE Alu 5 147 0 6 1342 221 122 0 39 chr4 99310165 99310216 -56319904 + A-rich Low_complexity Low_complexity 3 51 0 6 1342 594 261 0 30 chr4 99310571 99310705 -56319415 + ID_B1 SINE B4 82 211 -13 6 1342 1078 112 11 0 chr4 99310712 99310890 -56319230 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1342 843 169 17 0 chr4 99310899 99311076 -56319044 + GA-rich Low_complexity Low_complexity 1 180 0 6 1342 195 42 0 0 chr4 99311089 99311113 -56319007 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 6 1342 632 201 0 134 chr4 99311338 99311510 -56318610 - B1_Mur1 SINE Alu 0 149 1 6 1342 641 315 41 23 chr4 99311536 99311802 -56318318 + MER33 DNA MER1_type 1 271 -53 6 1342 278 321 17 35 chr4 99311802 99311918 -56318202 + PB1D10 SINE Alu 2 115 -2 6 1342 626 216 44 7 chr4 99311959 99312094 -56318026 - B1F SINE Alu 0 149 10 6 1342 340 291 109 41 chr4 99312378 99312525 -56317595 + ID_B1 SINE B4 66 222 -2 6 1342 189 0 0 0 chr4 99312530 99312551 -56317569 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1342 276 279 2 45 chr4 99312555 99312672 -56317448 + ID4 SINE ID 2 114 -38 6 1342 756 166 65 0 chr4 99312697 99312836 -56317284 + B1_Mur4 SINE Alu 2 149 -1 6 1342 462 36 0 0 chr4 99312909 99312965 -56317155 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1342 428 322 0 27 chr4 99313086 99313233 -56316887 + ID_B1 SINE B4 81 223 -1 6 1342 290 183 183 0 chr4 99313241 99313301 -56316819 + ID4_ SINE ID 2 72 -11 6 1342 219 316 0 0 chr4 99313334 99313391 -56316729 + ID4 SINE ID 16 72 -11 6 1342 180 152 0 0 chr4 99313421 99313454 -56316666 + GA-rich Low_complexity Low_complexity 4 36 0 6 1342 593 216 49 0 chr4 99313480 99313582 -56316538 + 5S rRNA rRNA 1 107 -14 6 1342 1114 158 108 5 chr4 99313588 99313792 -56316328 + URR1B DNA MER1_type 1 225 0 6 1342 351 210 137 53 chr4 99313913 99314044 -56316076 - B1F SINE Alu -6 143 2 6 1342 351 0 0 0 chr4 99314055 99314094 -56316026 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1342 1254 35 0 0 chr4 99314094 99314238 -56315882 - B1_Mus2 SINE Alu -3 144 1 6 1342 561 68 0 0 chr4 99314490 99314564 -56315556 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1342 411 237 59 49 chr4 99314616 99314718 -56315402 + PB1D10 SINE Alu 3 105 -12 6 1342 732 257 36 0 chr4 99315003 99315143 -56314977 - RSINE1 SINE B4 -11 154 10 6 1342 200 299 95 71 chr4 99315150 99315319 -56314801 + L2b LINE L2 3070 3242 -145 6 1342 444 216 11 33 chr4 99315430 99315521 -56314599 - B3A SINE B2 -86 112 24 6 1342 336 206 8 144 chr4 99315773 99315898 -56314222 - PB1D7 SINE Alu 0 120 13 6 1342 1380 61 0 37 chr4 99315899 99316087 -56314033 + B2_Mm2 SINE B2 1 181 -14 6 1342 180 0 0 0 chr4 99317957 99317977 -56312143 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1342 21 36 0 0 chr4 99317999 99318027 -56312093 + GC_rich Low_complexity Low_complexity 1 28 0 6 1342 378 0 0 0 chr4 99322128 99322170 -56307950 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1342 252 86 0 0 chr4 99322372 99322407 -56307713 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1342 212 222 15 31 chr4 99322545 99322610 -56307510 + C-rich Low_complexity Low_complexity 1 64 0 6 1342 198 91 0 0 chr4 99324149 99324182 -56305938 + (CGG)n Simple_repeat Simple_repeat 3 35 0 6 1342 29 47 0 0 chr4 99324325 99324368 -56305752 + GC_rich Low_complexity Low_complexity 1 43 0 6 1342 204 167 0 0 chr4 99324477 99324525 -56305595 + (CGG)n Simple_repeat Simple_repeat 3 50 0 6 1342 22 0 0 0 chr4 99325529 99325551 -56304569 + AT_rich Low_complexity Low_complexity 1 22 0 6 1342 216 0 0 0 chr4 99326147 99326171 -56303949 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1342 189 0 0 0 chr4 99327809 99327830 -56302290 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1342 237 108 0 0 chr4 99328252 99328289 -56301831 + (G)n Simple_repeat Simple_repeat 1 37 0 6 1342 235 316 0 59 chr4 99330532 99330633 -56299487 + L2b LINE L2 3103 3197 -178 6 1342 1195 91 62 17 chr4 99330796 99330975 -56299145 + B2_Mm1t SINE B2 1 187 -6 6 1342 1154 106 50 6 chr4 99331320 99331500 -56298620 - B2_Mm1t SINE B2 -3 190 3 6 1342 1172 160 0 74 chr4 99331842 99332071 -56298049 + B3 SINE B2 2 213 -3 6 1342 419 286 61 0 chr4 99332136 99332234 -56297886 + PB1D10 SINE Alu 1 104 -13 6 1342 416 289 140 0 chr4 99332234 99332248 -56297872 + ID_B1 SINE B4 82 209 -15 6 1342 192 259 12 24 chr4 99332790 99332956 -56297164 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1342 221 265 180 155 chr4 99332956 99333117 -56297003 - RSINE1 SINE B4 0 165 1 7 1342 354 156 0 0 chr4 99333701 99333765 -56296355 + CT-rich Low_complexity Low_complexity 3 66 0 7 1342 297 252 35 61 chr4 99333767 99333881 -56296239 - PB1D10 SINE Alu -6 111 1 7 1342 286 324 98 52 chr4 99334270 99334423 -56295697 + AmnSINE1 SINE SINE 217 376 -199 7 1342 379 220 82 9 chr4 99334551 99334661 -56295459 + PB1D7 SINE Alu 3 120 0 7 1342 356 200 204 15 chr4 99334666 99334798 -56295322 + ID_B1 SINE B4 12 168 -56 7 1342 348 24 0 0 chr4 99334909 99334950 -56295170 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1342 254 95 24 0 chr4 99334952 99334994 -56295126 + (ATG)n Simple_repeat Simple_repeat 2 44 0 7 1342 333 333 66 33 chr4 99335017 99335169 -56294951 + RSINE1 SINE B4 4 160 -5 7 1342 883 166 7 7 chr4 99335225 99335371 -56294749 - B1_Mus1 SINE Alu -2 146 1 7 1342 1128 85 57 0 chr4 99335383 99335560 -56294560 - B2_Mm2 SINE B2 -7 188 2 7 1342 229 269 49 115 chr4 99335971 99336093 -56294027 + PB1D7 SINE Alu 1 114 -6 7 1342 364 278 73 45 chr4 99336354 99336531 -56293589 + B2_Mm2 SINE B2 4 185 -10 7 1342 954 99 42 0 chr4 99336542 99336684 -56293436 + B1_Mus1 SINE Alu 1 148 0 7 1342 558 108 0 0 chr4 99336699 99336782 -56293338 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 7 1342 408 248 17 26 chr4 99337082 99337198 -56292922 + B1F2 SINE Alu 1 115 -34 7 1342 257 259 0 0 chr4 99337265 99337319 -56292801 + RSINE1 SINE B4 93 146 -19 7 1342 1164 68 0 0 chr4 99337656 99337803 -56292317 - B1_Mus2 SINE Alu 0 147 1 7 1342 560 198 63 0 chr4 99337865 99337976 -56292144 - PB1D9 SINE Alu -1 119 2 7 1342 594 109 0 0 chr4 99338008 99338100 -56292020 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 7 1342 655 257 7 0 chr4 99338365 99338505 -56291615 + B1_Mur1 SINE Alu 3 143 -6 7 1342 284 336 50 0 chr4 99338507 99338626 -56291494 - Lx8 LINE L1 -331 7142 7018 7 1342 582 206 136 71 chr4 99338648 99338846 -56291274 - RMER15-int LTR ERVL -105 4894 4684 7 1342 270 176 0 0 chr4 99338856 99338907 -56291213 + GA-rich Low_complexity Low_complexity 3 53 0 7 1342 1532 290 53 6 chr4 99338910 99339378 -56290742 - RMER15-int LTR ERVL -320 4679 4190 7 1342 1138 119 47 31 chr4 99339570 99339761 -56290359 + B2_Mm2 SINE B2 1 194 -1 7 1342 376 78 0 0 chr4 99339797 99339848 -56290272 + B1_Mus1 SINE Alu 5 55 -93 7 1342 264 199 19 27 chr4 99339848 99339871 -56290249 + B4 SINE B4 96 157 -67 7 1342 712 113 0 0 chr4 99339937 99340043 -56290077 + B1_Mus2 SINE Alu 42 147 0 7 1342 252 0 0 0 chr4 99340058 99340086 -56290034 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1342 585 100 0 11 chr4 99340088 99340179 -56289941 + B2_Mm1t SINE B2 4 93 -100 7 1342 252 194 75 0 chr4 99340185 99340244 -56289876 + Lx3_Mus LINE L1 6195 6272 -737 7 1342 1087 64 7 14 chr4 99340386 99340529 -56289591 - B1_Mus1 SINE Alu -5 143 2 7 1342 637 259 65 30 chr4 99340537 99340768 -56289352 + RMER15 LTR ERVL 337 575 0 7 1342 678 294 38 0 chr4 99340768 99340952 -56289168 - RMER15-int LTR ERVL -2513 2486 2296 7 1342 970 141 7 0 chr4 99341069 99341211 -56288909 + B1_Mur3 SINE Alu 5 147 -2 7 1342 315 344 82 31 chr4 99341275 99341470 -56288650 - RMER15-int LTR ERVL -2914 2085 1881 7 1342 846 357 22 42 chr4 99341535 99341668 -56288452 - RMER15-int LTR ERVL -3220 1779 1645 7 1342 871 111 173 36 chr4 99341668 99341836 -56288284 - B2_Mm2 SINE B2 -4 191 1 7 1342 846 357 22 42 chr4 99341836 99342150 -56287970 - RMER15-int LTR ERVL -3355 1644 1341 7 1342 447 261 145 0 chr4 99342150 99342288 -56287832 + RSINE1 SINE B4 6 163 -2 7 1342 567 181 0 0 chr4 99342290 99342406 -56287714 + (CA)n Simple_repeat Simple_repeat 1 116 0 7 1342 376 226 111 8 chr4 99342422 99342559 -56287561 - L1_Mur1 LINE L1 -1295 4585 4438 7 1342 598 283 32 26 chr4 99342559 99342579 -56287541 - B3A SINE B2 -6 192 168 7 1342 195 42 0 0 chr4 99342579 99342603 -56287517 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1342 598 283 32 26 chr4 99342603 99342771 -56287349 - B3A SINE B2 -31 167 3 7 1342 555 252 95 130 chr4 99342773 99342919 -56287201 - L1M2 LINE L1 -1662 4481 4314 7 1342 219 36 0 0 chr4 99342919 99342947 -56287173 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1342 1089 82 0 0 chr4 99342947 99343082 -56287038 - B1_Mus1 SINE Alu -13 135 1 7 1342 555 252 95 130 chr4 99343082 99343190 -56286930 - L1M2 LINE L1 -1830 4313 4232 7 1342 545 168 42 42 chr4 99343190 99343308 -56286812 - PB1D9 SINE Alu 0 120 3 7 1342 555 252 95 130 chr4 99343308 99343452 -56286668 - L1M2 LINE L1 -1912 4231 4096 7 1342 4569 219 41 13 chr4 99343457 99344383 -56285737 + MERVL_2A-int LTR ERVL 3773 4724 -1037 7 1342 985 120 12 12 chr4 99344390 99344558 -56285562 + B2_Mm2 SINE B2 1 168 -27 7 1342 3259 217 36 46 chr4 99344562 99345354 -56284766 + MERVL_2A-int LTR ERVL 4605 5471 -290 7 1342 698 245 7 13 chr4 99345354 99345503 -56284617 + B1_Mur1 SINE Alu 2 149 0 7 1342 3017 276 30 72 chr4 99345503 99345863 -56284257 + MERVL_2A-int LTR ERVL 5381 5709 -5 7 1342 834 230 94 5 chr4 99345867 99346059 -56284061 + MT2A LTR ERVL 1 209 -324 7 1342 28 0 0 0 chr4 99346059 99346087 -56284033 + AT_rich Low_complexity Low_complexity 1 28 0 7 1342 1173 80 0 0 chr4 99346088 99346251 -56283869 + B2_Mm2 SINE B2 2 164 -31 7 1342 1518 251 26 18 chr4 99346275 99346657 -56283463 + Lx7 LINE L1 6817 7201 -495 7 1342 318 260 42 91 chr4 99346853 99347018 -56283102 - RLTR20B3 LTR ERVK -307 270 114 7 1342 990 262 72 48 chr4 99347096 99347429 -56282691 + MT2A LTR ERVL 193 533 0 7 1342 2031 256 26 11 chr4 99347430 99348002 -56282118 - L1_Mur3 LINE L1 -1823 4057 3477 7 1342 606 165 104 0 chr4 99348410 99348525 -56281595 + B1_Mur3 SINE Alu 2 128 -21 7 1342 255 233 17 0 chr4 99348527 99348587 -56281533 + MIR SINE MIR 42 102 -106 7 1342 1421 237 62 16 chr4 99348716 99349111 -56281009 - MTD LTR MaLR -26 393 1 7 1342 500 226 103 58 chr4 99349151 99349306 -56280814 + RSINE1 SINE B4 3 164 -1 7 1342 189 0 0 0 chr4 99349321 99349342 -56280778 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1342 1223 54 0 0 chr4 99349762 99349909 -56280211 - B1_Mus1 SINE Alu 0 148 2 7 1342 430 308 67 0 chr4 99349909 99350104 -56280016 - L1MA6 LINE L1 -103 6197 5990 7 1342 305 289 140 63 chr4 99350488 99350695 -56279425 + ID_B1 SINE B4 1 223 -1 7 1342 433 305 28 7 chr4 99350743 99350885 -56279235 + MLT1K LTR MaLR 242 386 -209 7 1342 381 22 0 0 chr4 99351443 99351489 -56278631 + (TATG)n Simple_repeat Simple_repeat 4 49 0 7 1342 352 228 96 21 chr4 99351517 99351611 -56278509 - RSINE1 SINE B4 -63 102 2 7 1342 24 53 0 0 chr4 99351624 99351662 -56278458 + AT_rich Low_complexity Low_complexity 1 38 0 7 1342 435 62 0 120 chr4 99351762 99351854 -56278266 - L1Md_F2 LINE L1 0 6582 6502 7 1342 312 254 17 0 chr4 99351878 99352055 -56278065 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1342 630 241 24 54 chr4 99352055 99352222 -56277898 - RSINE1 SINE B4 0 165 4 7 1342 461 256 208 13 chr4 99352274 99352428 -56277692 - B3A SINE B2 -14 184 1 7 167 637 267 69 0 chr4 99352542 99352744 -56277376 - ID_B1 SINE B4 -6 218 3 7 1343 271 200 0 18 chr4 99352907 99352963 -56277157 + B3A SINE B2 2 56 -142 7 1343 23 33 0 0 chr4 99353041 99353071 -56277049 + AT_rich Low_complexity Low_complexity 1 30 0 7 1343 395 127 0 0 chr4 99353077 99353140 -56276980 - URR1B DNA MER1_type -2 223 161 7 1343 234 227 0 107 chr4 99353257 99353341 -56276779 + B1F SINE Alu 73 147 -2 7 1343 530 176 10 10 chr4 99353346 99353449 -56276671 + B3 SINE B2 1 103 -113 7 1343 1635 36 0 20 chr4 99353914 99354111 -56276009 - B2_Mm1a SINE B2 0 193 1 7 1343 253 186 0 0 chr4 99355412 99355455 -56274665 - RLTR42-int LTR ERVK -4435 1087 1045 7 1343 755 252 186 22 chr4 99356153 99356384 -56273736 - MTC-int LTR MaLR -246 1012 744 7 1343 716 241 5 35 chr4 99356389 99356587 -56273533 - MTC-int LTR MaLR -713 545 354 7 1343 1027 126 120 0 chr4 99356591 99356774 -56273346 - MTD LTR MaLR -8 411 207 7 1343 522 46 0 0 chr4 99356776 99356841 -56273279 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 7 1343 1210 94 6 0 chr4 99356846 99357017 -56273103 - B2_Mm1t SINE B2 -21 172 1 7 1343 521 273 23 0 chr4 99357017 99357137 -56272983 - MTD LTR MaLR -194 225 103 7 1343 1178 61 0 13 chr4 99357823 99357972 -56272148 - B1_Mus2 SINE Alu 0 147 1 7 1343 182 222 0 43 chr4 99359074 99359168 -56270952 + (TGG)n Simple_repeat Simple_repeat 1 90 0 7 1343 244 263 8 58 chr4 99359180 99359301 -56270819 + (TGG)n Simple_repeat Simple_repeat 2 116 0 7 1343 2028 127 49 0 chr4 99359367 99359675 -56270445 + ORR1A2 LTR MaLR 1 323 -4 7 1343 225 301 0 161 chr4 99360439 99360526 -56269594 + PB1D7 SINE Alu 46 118 -2 7 1343 1219 121 16 0 chr4 99360580 99360762 -56269358 - B2_Mm2 SINE B2 -9 186 2 7 1343 237 316 51 0 chr4 99360787 99360885 -56269235 - PB1D9 SINE Alu -17 103 1 7 1343 216 0 0 0 chr4 99360901 99360925 -56269195 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1343 396 0 0 0 chr4 99361692 99361736 -56268384 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1343 378 0 0 0 chr4 99361736 99361777 -56268343 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1343 1388 71 38 6 chr4 99362023 99362206 -56267914 + B2_Mm2 SINE B2 2 190 -5 7 1343 243 0 0 0 chr4 99362291 99362318 -56267802 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1343 324 0 0 0 chr4 99362413 99362449 -56267671 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1343 2074 172 117 48 chr4 99362517 99363012 -56267108 - RLTR24 LTR ERV1 0 529 1 7 1343 530 289 6 77 chr4 99363150 99363319 -56266801 + RSINE1 SINE B4 3 159 -6 7 1343 225 0 0 0 chr4 99363767 99363792 -56266328 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 1343 733 199 13 27 chr4 99363949 99364099 -56266021 + B1_Mur1 SINE Alu 2 149 0 7 1343 975 215 78 19 chr4 99364151 99364407 -56265713 - Lx4B LINE L1 0 7058 6788 7 1343 3200 142 69 70 chr4 99364617 99365229 -56264891 - RMER19C LTR ERVK 0 611 1 7 1343 233 191 72 14 chr4 99365413 99365482 -56264638 - L1MC5 LINE L1 -890 7071 6999 8 1343 750 78 0 0 chr4 99365504 99365606 -56264514 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 8 1343 961 16 107 0 chr4 99365608 99365729 -56264391 - B1_Mus1 SINE Alu -13 135 2 8 1343 727 236 25 40 chr4 99365760 99365959 -56264161 - B3A SINE B2 -1 197 2 8 1343 303 322 97 6 chr4 99366140 99366315 -56263805 - L1MC5 LINE L1 -1093 6868 6678 8 1343 239 161 147 88 chr4 99366371 99366439 -56263681 - ID4_ SINE ID -10 73 2 8 1343 570 231 13 53 chr4 99366449 99366600 -56263520 - B1_Mur4 SINE Alu -5 145 1 8 1343 322 298 22 97 chr4 99366638 99366654 -56263466 - B1F SINE Alu 0 149 137 8 1343 207 0 0 0 chr4 99366654 99366677 -56263443 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1343 322 298 22 97 chr4 99366677 99366794 -56263326 - B1F SINE Alu -13 136 26 8 1343 711 142 0 0 chr4 99367048 99367168 -56262952 + (TG)n Simple_repeat Simple_repeat 2 121 0 8 1343 875 221 10 35 chr4 99367281 99367483 -56262637 - B3A SINE B2 0 198 2 8 1343 236 316 0 0 chr4 99367632 99367689 -56262431 + polypyrimidine Low_complexity Low_complexity 4 60 0 8 1343 457 208 35 82 chr4 99367786 99367922 -56262198 + ID_B1 SINE B4 86 217 -7 8 1343 1079 188 128 101 chr4 99368087 99368454 -56261666 + MTEb LTR MaLR 1 377 -2 8 1343 731 295 159 3 chr4 99368456 99368752 -56261368 + MTEb-int LTR MaLR 1 342 -1238 8 1343 2367 272 62 21 chr4 99368803 99369519 -56260601 + MTEb-int LTR MaLR 620 1364 -216 8 1343 416 19 19 0 chr4 99369528 99369581 -56260539 + (TATG)n Simple_repeat Simple_repeat 2 55 0 8 1343 830 122 43 7 chr4 99369599 99369739 -56260381 - B2_Mm2 SINE B2 -50 145 1 8 1343 747 264 31 18 chr4 99369749 99369973 -56260147 + MTEb-int LTR MaLR 1353 1579 -1 8 1343 314 195 83 24 chr4 99369974 99370058 -56260062 + MTEb LTR MaLR 6 94 -285 8 1343 282 295 53 9 chr4 99370210 99370323 -56259797 + B3 SINE B2 88 205 -11 8 1343 705 199 0 0 chr4 99370323 99370499 -56259621 + (CA)n Simple_repeat Simple_repeat 1 176 0 8 1343 528 248 0 0 chr4 99370530 99370951 -56259169 + (CA)n Simple_repeat Simple_repeat 1 421 0 8 1343 26 0 0 0 chr4 99370954 99370980 -56259140 + AT_rich Low_complexity Low_complexity 1 26 0 8 1343 341 305 76 143 chr4 99370998 99371235 -56258885 + ID_B1 SINE B4 1 221 -3 8 1343 225 0 0 0 chr4 99371237 99371262 -56258858 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1343 652 235 37 0 chr4 99371277 99371413 -56258707 + B1_Mur1 SINE Alu 1 141 -8 8 1343 567 0 0 0 chr4 99371458 99371521 -56258599 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 8 1343 956 98 0 8 chr4 99371522 99371655 -56258465 - B1_Mus1 SINE Alu -15 133 2 8 1343 299 278 14 0 chr4 99371835 99371907 -56258213 + ID4_ SINE ID 2 74 -9 8 1343 565 263 14 21 chr4 99372352 99372492 -56257628 + ID_B1 SINE B4 85 223 -1 8 1343 902 185 197 0 chr4 99372530 99372708 -56257412 + B3 SINE B2 2 214 -2 8 1343 489 17 0 0 chr4 99372928 99372986 -56257134 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 8 1343 519 296 33 33 chr4 99373025 99373235 -56256885 - ID_B1 SINE B4 -13 211 2 8 1343 481 274 107 13 chr4 99373376 99373535 -56256585 + ORR1D2 LTR MaLR 22 195 -175 8 1343 329 163 52 27 chr4 99373559 99373644 -56256476 + ORR1D2 LTR MaLR 282 405 -14 8 1343 628 196 65 0 chr4 99373645 99373783 -56256337 - RSINE1 SINE B4 -3 162 16 8 1343 1324 107 23 9 chr4 99373815 99374032 -56256088 + Lx LINE L1 6434 6653 -1 8 1343 254 208 0 0 chr4 99374189 99374237 -56255883 - RMER15 LTR ERVL -113 462 415 8 1343 1512 253 57 21 chr4 99374289 99374709 -56255411 - Lx8 LINE L1 -252 7221 6787 8 1343 563 216 0 51 chr4 99374717 99374834 -56255286 + RSINE1 SINE B4 4 114 -51 8 1343 636 14 0 0 chr4 99374834 99374907 -56255213 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1343 366 100 0 0 chr4 99375242 99375302 -56254818 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1343 577 255 47 7 chr4 99375303 99375453 -56254667 - B3A SINE B2 -41 157 2 8 1343 575 92 11 0 chr4 99376434 99376521 -56253599 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 8 1343 309 222 101 9 chr4 99376547 99376656 -56253464 - RSINE1 SINE B4 -45 120 2 8 1343 1002 62 76 0 chr4 99377457 99377602 -56252518 + B2_Mm2 SINE B2 2 157 -38 8 1343 423 0 0 0 chr4 99377602 99377649 -56252471 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 8 1343 229 268 149 57 chr4 99378344 99378538 -56251582 - L1ME2 LINE L1 -226 5938 5727 8 1343 270 0 0 0 chr4 99378695 99378725 -56251395 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1343 217 176 27 0 chr4 99378799 99378873 -56251247 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1343 187 161 18 18 chr4 99378948 99379005 -56251115 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1343 238 283 24 6 chr4 99379029 99379202 -56250918 + (CA)n Simple_repeat Simple_repeat 1 176 0 8 1343 484 270 86 62 chr4 99379863 99380072 -56250048 - B4A SINE B4 -35 257 44 8 1343 455 206 33 0 chr4 99380067 99380159 -56249961 - B3A SINE B2 -103 95 1 8 1343 511 219 23 39 chr4 99381412 99381540 -56248580 + B4A SINE B4 166 291 -1 8 1343 332 187 13 89 chr4 99381749 99381861 -56248259 - PB1D10 SINE Alu 0 117 16 8 1343 476 157 29 29 chr4 99382780 99382885 -56247235 + B1F2 SINE Alu 34 138 -11 8 1343 250 206 16 16 chr4 99383310 99383374 -56246746 - L1_Mur3 LINE L1 -3078 2802 2739 8 1343 2587 39 0 0 chr4 99383375 99383686 -56246434 - L1Md_F2 LINE L1 0 6582 6272 8 1343 26 0 0 0 chr4 99383686 99383712 -56246408 + AT_rich Low_complexity Low_complexity 1 26 0 8 1343 253 239 26 66 chr4 99383727 99383803 -56246317 + MTC LTR MaLR 1 73 -348 8 1343 1361 91 11 0 chr4 99383817 99384004 -56246116 + B2_Mm1t SINE B2 2 190 -3 8 1343 753 216 14 0 chr4 99384066 99384205 -56245915 - B1_Mur3 SINE Alu -5 144 4 8 1343 520 258 162 0 chr4 99384349 99384516 -56245604 + B3A SINE B2 1 194 -4 8 1343 263 299 44 33 chr4 99384538 99384628 -56245492 + PB1D10 SINE Alu 15 105 -12 8 1343 261 0 0 0 chr4 99385171 99385200 -56244920 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1343 647 112 0 41 chr4 99385373 99385494 -56244626 + RMER10B LTR ERVL 227 342 -56 8 1343 37 0 0 0 chr4 99386384 99386421 -56243699 + AT_rich Low_complexity Low_complexity 1 37 0 8 1343 732 236 19 6 chr4 99386862 99387024 -56243096 + B3 SINE B2 53 216 0 8 1343 266 339 82 14 chr4 99387381 99387527 -56242593 + MIRc SINE MIR 43 201 -67 8 1343 576 264 7 28 chr4 99387623 99387767 -56242353 + ID_B1 SINE B4 84 224 0 8 1343 180 0 0 0 chr4 99387770 99387790 -56242330 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1343 432 37 0 0 chr4 99388090 99388144 -56241976 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1343 489 319 18 0 chr4 99388484 99388623 -56241497 + ID_B1 SINE B4 36 178 -46 8 1343 260 320 52 8 chr4 99388650 99388772 -56241348 - MER34 LTR ERV1 -434 137 3 8 1343 453 252 30 22 chr4 99390275 99390409 -56239711 - ID_B1 SINE B4 -9 215 81 8 1343 636 211 81 0 chr4 99390407 99390530 -56239590 - B1_Mur1 SINE Alu -5 144 12 8 1343 228 257 0 136 chr4 99390458 99390539 -56239581 - MT2B2 LTR ERVL -345 239 170 8 1343 542 293 31 52 chr4 99390751 99390942 -56239178 - B4A SINE B4 -104 188 2 8 1343 1042 150 200 0 chr4 99391754 99391934 -56238186 + B3 SINE B2 1 216 0 8 1343 261 372 90 0 chr4 99391970 99392059 -56238061 + MIR SINE MIR 21 121 -141 8 1343 1329 41 0 0 chr4 99392059 99392206 -56237914 - B1_Mm SINE Alu 0 147 1 8 1343 261 372 90 0 chr4 99392206 99392261 -56237859 + MIR SINE MIR 122 177 -85 8 1343 432 235 165 8 chr4 99392368 99392501 -56237619 - RSINE1 SINE B4 -8 157 4 8 1343 705 271 142 16 chr4 99392660 99392971 -56237149 - ORR1E LTR MaLR -5 354 5 8 1343 413 311 40 32 chr4 99393015 99393141 -56236979 + RSINE1 SINE B4 4 130 -35 8 1343 653 202 0 0 chr4 99393147 99393256 -56236864 - B1_Mur2 SINE Alu -25 124 16 8 1343 189 0 0 0 chr4 99393271 99393292 -56236828 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 8 1343 508 261 30 54 chr4 99393866 99394032 -56236088 - RSINE1 SINE B4 -1 164 3 8 1343 221 328 80 3 chr4 99394595 99394715 -56235405 + MIR SINE MIR 46 174 -94 8 1343 512 233 89 4 chr4 99394875 99395039 -56235081 - B3A SINE B2 -13 185 1 8 1343 1036 126 120 0 chr4 99395125 99395316 -56234804 - ORR1C2 LTR MaLR -156 228 15 8 1343 265 279 69 13 chr4 99395380 99395495 -56234625 - PB1D7 SINE Alu 0 120 1 8 1343 6964 136 110 13 chr4 99395825 99397160 -56232960 - ORR1A3-int LTR MaLR -513 1450 1 8 1343 2148 136 29 0 chr4 99397160 99397476 -56232644 - ORR1A3 LTR MaLR 0 326 2 8 1343 36294 34 0 0 chr4 99397857 99403496 -56226624 + L1Md_T LINE L1 1 5589 -297 8 1343 9601 5 0 0 chr4 99403496 99404492 -56225628 + L1Md_T LINE L1 5590 6585 0 8 1343 261 0 0 0 chr4 99404517 99404546 -56225574 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1343 282 254 28 0 chr4 99404645 99404716 -56225404 + MER94 DNA AcHobo 1 73 -61 8 1343 219 69 0 0 chr4 99406159 99406188 -56223932 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1343 1049 150 0 13 chr4 99406197 99406346 -56223774 - B1_Mur2 SINE Alu -2 147 1 8 1343 181 309 22 77 chr4 99406492 99406583 -56223537 - MIRm SINE MIR -105 171 86 8 1343 261 258 30 0 chr4 99406724 99406790 -56223330 - ID4_ SINE ID -9 74 7 8 1343 180 0 0 0 chr4 99406977 99406997 -56223123 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 8 1343 209 213 0 0 chr4 99407217 99407264 -56222856 + T-rich Low_complexity Low_complexity 1 47 0 8 1343 279 0 0 0 chr4 99407292 99407323 -56222797 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1343 289 173 0 111 chr4 99407380 99407467 -56222653 - B1F1 SINE Alu -5 144 52 8 1343 22 35 0 0 chr4 99407522 99407551 -56222569 + AT_rich Low_complexity Low_complexity 1 29 0 8 1343 697 190 0 23 chr4 99408723 99408852 -56221268 + B1_Mur2 SINE Alu 3 128 -21 8 1343 1225 42 0 20 chr4 99409334 99409481 -56220639 - B1_Mm SINE Alu -2 145 2 8 1343 643 242 47 0 chr4 99409537 99409665 -56220455 - RSINE1 SINE B4 -29 136 3 9 1343 21 57 0 0 chr4 99410148 99410183 -56219937 + AT_rich Low_complexity Low_complexity 1 35 0 9 1343 25 0 0 0 chr4 99412700 99412725 -56217395 + AT_rich Low_complexity Low_complexity 1 25 0 9 1343 214 273 0 0 chr4 99413223 99413242 -56216878 + C-rich Low_complexity Low_complexity 39 57 0 9 1343 643 180 47 8 chr4 99413242 99413371 -56216749 - B1_Mm SINE Alu -13 134 1 9 1343 214 273 0 0 chr4 99413371 99413406 -56216714 + C-rich Low_complexity Low_complexity 4 38 0 9 1343 228 325 108 0 chr4 99413770 99413890 -56216230 - MLT2F LTR ERVL -527 136 4 9 1343 348 203 0 68 chr4 99414023 99414097 -56216023 + tRNA-Lys-AAG tRNA tRNA 8 76 0 9 1343 2633 191 78 11 chr4 99414099 99414640 -56215480 - RLTR20B3 LTR ERVK 0 577 1 9 1343 1259 13 7 0 chr4 99414779 99414928 -56215192 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 9 1343 740 62 274 0 chr4 99414928 99415041 -56215079 - B1_Mus2 SINE Alu -2 145 2 9 1343 30 0 0 0 chr4 99415237 99415267 -56214853 + AT_rich Low_complexity Low_complexity 1 30 0 9 1343 211 54 0 51 chr4 99416553 99416592 -56213528 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1343 404 316 18 0 chr4 99416597 99416711 -56213409 - RSINE1 SINE B4 -48 117 2 9 1343 648 167 16 62 chr4 99416914 99417042 -56213078 - RSINE1 SINE B4 -41 124 3 9 1343 1219 76 0 7 chr4 99417105 99417251 -56212869 + B1_Mus2 SINE Alu 2 146 -1 9 1343 639 184 18 0 chr4 99418144 99418253 -56211867 - B1_Mus1 SINE Alu -37 111 1 9 1343 1627 216 50 28 chr4 99418326 99418688 -56211432 - ORR1D2 LTR MaLR 0 370 1 9 1343 646 299 13 6 chr4 99419921 99420079 -56210041 - RSINE1 SINE B4 -6 159 1 9 1343 485 296 26 52 chr4 99420139 99420292 -56209828 - B1F SINE Alu 0 149 1 9 1343 407 271 55 80 chr4 99420303 99420540 -56209580 - L1MB8 LINE L1 -38 6140 5910 9 1343 415 251 174 0 chr4 99420549 99420744 -56209376 - MLT1B LTR MaLR -16 374 146 9 1343 497 271 0 179 chr4 99420851 99420918 -56209202 - RSINE1 SINE B4 -8 157 94 9 1343 1027 48 113 0 chr4 99420918 99421042 -56209078 + B1_Mus1 SINE Alu 2 139 -9 9 1343 497 271 0 179 chr4 99421042 99421158 -56208962 - RSINE1 SINE B4 -72 93 7 9 1343 596 286 125 10 chr4 99421182 99421486 -56208634 - L1MB8 LINE L1 -258 5920 5582 9 1343 374 262 92 0 chr4 99421554 99421695 -56208425 - L1MB8 LINE L1 -702 5482 5329 9 1343 1525 66 0 54 chr4 99421767 99421990 -56208130 - L1_Mus1 LINE L1 0 6567 6357 9 1343 743 266 68 64 chr4 99422190 99422757 -56207363 - L1MA5A LINE L1 -470 5827 5265 9 1343 732 245 129 0 chr4 99422855 99423096 -56207024 - L1MA5A LINE L1 -1096 5047 4776 9 1343 357 276 55 8 chr4 99423088 99423216 -56206904 - L1MA5A LINE L1 -1480 4660 4527 9 1343 632 304 0 7 chr4 99423225 99423371 -56206749 - ID_B1 SINE B4 -4 220 76 9 1343 3559 248 28 31 chr4 99423520 99424415 -56205705 - Lx7 LINE L1 -316 7380 6489 9 1343 320 308 180 12 chr4 99424828 99424989 -56205131 - MER3 DNA MER1_type -10 199 12 9 1343 6303 211 83 26 chr4 99426642 99428324 -56201796 - Lx9 LINE L1 -72 7572 5708 9 1343 279 0 0 0 chr4 99428911 99428942 -56201178 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1343 638 250 14 14 chr4 99429012 99429150 -56200970 + ID_B1 SINE B4 82 219 -5 9 1343 512 248 35 0 chr4 99429263 99429376 -56200744 + PB1D10 SINE Alu 1 117 0 9 1343 989 159 10 67 chr4 99429489 99429684 -56200436 + B2_Mm2 SINE B2 2 185 -10 9 1343 3643 5 0 0 chr4 99430631 99431013 -56199107 + L1Md_A LINE L1 6200 6581 -1 9 1343 469 250 44 9 chr4 99431135 99431248 -56198872 + PB1D10 SINE Alu 1 117 0 9 1343 265 303 82 38 chr4 99433875 99434029 -56196091 + B4 SINE B4 96 281 -11 9 1343 256 250 19 0 chr4 99435042 99435094 -56195026 - B1F1 SINE Alu -96 53 1 9 1343 827 288 24 9 chr4 99436345 99436555 -56193565 + B3 SINE B2 1 213 -3 9 1343 213 399 57 21 chr4 99436748 99436889 -56193231 + L2b LINE L2 3228 3373 -2 9 1343 820 122 35 0 chr4 99436919 99437034 -56193086 + B1_Mur1 SINE Alu 23 141 -8 9 1343 1120 49 27 40 chr4 99440200 99440349 -56189771 - B1_Mus1 SINE Alu 0 148 2 9 1343 207 0 0 0 chr4 99440896 99440919 -56189201 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1343 354 23 0 0 chr4 99440946 99440989 -56189131 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 9 1343 405 324 85 35 chr4 99441155 99441296 -56188824 + RSINE1 SINE B4 5 152 -13 9 1343 186 340 90 19 chr4 99441875 99442031 -56188089 + MIRb SINE MIR 22 188 -80 9 1343 280 307 70 19 chr4 99443612 99443826 -56186294 + L1M2 LINE L1 1598 1823 -6487 9 1343 713 295 38 84 chr4 99443899 99444060 -56186060 + B4A SINE B4 61 215 -77 9 1343 831 210 96 10 chr4 99444060 99444257 -56185863 + B3 SINE B2 2 215 -1 9 1343 713 295 38 84 chr4 99444257 99444332 -56185788 + B4A SINE B4 216 286 -6 9 1343 198 103 0 0 chr4 99444366 99444395 -56185725 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1343 277 43 21 21 chr4 99444438 99444486 -56185634 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 9 1343 301 259 47 0 chr4 99444773 99444858 -56185262 + L1M2 LINE L1 2551 2639 -3910 9 1343 218 224 32 65 chr4 99445113 99445175 -56184945 + B4A SINE B4 58 117 -175 9 1343 247 235 74 0 chr4 99445220 99445301 -56184819 + L1_Rod LINE L1 2143 2229 -3651 9 1343 811 307 34 19 chr4 99445302 99445564 -56184556 + B4A SINE B4 27 292 0 9 1343 1439 266 106 44 chr4 99445637 99445881 -56184239 + L1_Rod LINE L1 2256 2533 -3314 9 1343 2186 144 50 11 chr4 99445881 99446245 -56183875 - ORR1C1 LTR MaLR 0 378 1 9 1343 1439 269 102 49 chr4 99446245 99447117 -56183003 + L1_Rod LINE L1 2514 3383 -2497 9 1343 687 264 71 5 chr4 99447189 99447387 -56182733 - B3 SINE B2 -5 211 1 9 1343 423 307 121 30 chr4 99447564 99447762 -56182358 + B4A SINE B4 1 216 -76 9 1343 387 294 7 78 chr4 99447856 99447882 -56182238 + ID_B1 SINE B4 65 159 -133 9 1343 533 241 0 33 chr4 99447882 99448002 -56182118 + B1F SINE Alu 5 120 -29 9 1343 387 294 7 78 chr4 99448002 99448019 -56182101 + ID_B1 SINE B4 160 230 -62 9 1343 864 173 54 27 chr4 99448365 99448549 -56181571 + B2_Mm2 SINE B2 1 189 -6 9 1343 299 85 0 21 chr4 99448848 99448896 -56181224 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 9 1343 416 268 58 8 chr4 99448898 99449037 -56181083 - B1_Mur2 SINE Alu 0 149 1 9 1343 804 179 13 33 chr4 99449053 99449191 -56180929 + B1_Mur2 SINE Alu 2 140 -9 9 1343 183 100 0 0 chr4 99449191 99449221 -56180899 + (CAA)n Simple_repeat Simple_repeat 1 30 0 9 1343 804 179 13 33 chr4 99449221 99449232 -56180888 + B1_Mur2 SINE Alu 141 148 -1 9 1343 15311 166 68 29 chr4 99449248 99452354 -56177766 + Lx LINE L1 583 3847 -2036 9 1343 7079 45 0 2 chr4 99452354 99453213 -56176907 + L1Md_F2 LINE L1 5714 6570 -12 9 1343 15311 164 54 28 chr4 99453213 99455979 -56174141 + Lx LINE L1 3848 6654 0 9 1343 22 35 0 0 chr4 99456750 99456779 -56173341 + AT_rich Low_complexity Low_complexity 1 29 0 9 1343 603 159 62 0 chr4 99456822 99456935 -56173185 + URR1A DNA MER1_type 85 204 -22 9 1343 7178 53 11 2 chr4 99456936 99457830 -56172290 + L1Md_F2 LINE L1 5668 6569 -13 9 1343 655 257 14 14 chr4 99458135 99458281 -56171839 - B1F2 SINE Alu 0 149 4 9 1343 308 321 93 76 chr4 99458281 99458309 -56171811 - B4 SINE B4 -212 80 50 9 1343 21 82 0 0 chr4 99458894 99458943 -56171177 + AT_rich Low_complexity Low_complexity 1 49 0 9 1343 228 179 0 18 chr4 99458999 99459056 -56171064 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 9 1343 3073 45 0 10 chr4 99459521 99459907 -56170213 - L1Md_F2 LINE L1 -1 6581 6200 9 1343 1865 154 119 104 chr4 99459938 99460022 -56170098 + RLTR31A_Mm LTR ERVK 108 206 -378 9 1343 1090 68 0 92 chr4 99460022 99460124 -56169996 + B1_Mus1 SINE Alu 1 100 -48 9 1343 1669 16 16 0 chr4 99460124 99460314 -56169806 + B2_Mm1a SINE B2 1 193 0 9 1343 1090 68 0 92 chr4 99460314 99460374 -56169746 + B1_Mus1 SINE Alu 101 148 0 9 1343 1865 154 119 104 chr4 99460374 99460487 -56169633 + RLTR31A_Mm LTR ERVK 207 296 -288 9 1343 1700 16 0 0 chr4 99460487 99460676 -56169444 + B2_Mm1a SINE B2 2 190 -3 9 1343 1865 154 119 104 chr4 99460676 99460947 -56169173 + RLTR31A_Mm LTR ERVK 297 584 0 9 1343 703 246 58 63 chr4 99460947 99461471 -56168649 + RMER3D-int LTR ERVK 1 851 -1991 9 1343 6038 198 27 49 chr4 99461472 99462186 -56167934 + RMER3D-int LTR ERVK 1135 1827 -1015 9 1343 3028 74 31 2 chr4 99462186 99462606 -56167514 - L1_Mus2 LINE L1 0 6566 6135 9 1343 6038 198 27 49 chr4 99462606 99463634 -56166486 + RMER3D-int LTR ERVK 1828 2839 -3 9 1343 1520 162 20 27 chr4 99463639 99463937 -56166183 + RLTR31A_Mm LTR ERVK 3 298 -286 9 1343 849 221 85 0 chr4 99463964 99464163 -56165957 + B3 SINE B2 1 216 0 9 1343 523 315 20 40 chr4 99464225 99464374 -56165746 + RSINE1 SINE B4 3 148 -17 9 1343 369 0 0 0 chr4 99464403 99464444 -56165676 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1343 251 250 77 26 chr4 99465523 99465601 -56164519 + B1F2 SINE Alu 13 95 -54 9 1343 985 110 0 7 chr4 99466090 99466236 -56163884 + B1_Mus2 SINE Alu 2 146 -1 9 1343 423 224 0 0 chr4 99466609 99466685 -56163435 + ID_B1 SINE B4 82 157 -67 9 1343 365 287 37 0 chr4 99466685 99466717 -56163403 + PB1D10 SINE Alu 1 112 -5 9 1343 706 271 27 67 chr4 99466797 99467092 -56163028 + B4A SINE B4 2 274 -18 9 1343 303 259 102 0 chr4 99467445 99467553 -56162567 - L1ME3B LINE L1 -30 6210 6092 9 1343 25 31 0 0 chr4 99468230 99468262 -56161858 + AT_rich Low_complexity Low_complexity 1 32 0 9 1343 466 290 81 108 chr4 99469709 99469968 -56160152 + B4A SINE B4 41 292 0 9 1343 845 234 32 27 chr4 99470265 99470485 -56159635 + ID_B1 SINE B4 1 221 -3 9 1343 21 0 0 0 chr4 99472074 99472095 -56158025 + AT_rich Low_complexity Low_complexity 1 21 0 9 1343 540 216 18 0 chr4 99472220 99472331 -56157789 - PB1D10 SINE Alu -1 116 4 9 1343 7665 52 0 2 chr4 99472338 99473526 -56156594 - L1Md_F2 LINE L1 -10 6572 5388 9 1343 479 165 13 0 chr4 99473821 99473900 -56156220 + B1_Mur4 SINE Alu 46 125 -25 9 1343 392 0 21 0 chr4 99473919 99473967 -56156153 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1343 274 326 11 0 chr4 99474137 99474232 -56155888 - B1_Mur4 SINE Alu -1 149 54 9 1343 322 336 47 0 chr4 99474246 99474353 -56155767 - RSINE1 SINE B4 -51 114 3 9 1343 634 277 191 31 chr4 99474568 99475108 -56155012 - L1ME2 LINE L1 0 6164 5539 9 1343 291 270 14 0 chr4 99475325 99475399 -56154721 + RLTR24 LTR ERV1 1 75 -454 9 1343 1091 72 7 0 chr4 99475508 99475646 -56154474 + B1_Mus1 SINE Alu 1 139 -9 9 1343 243 0 0 0 chr4 99475646 99475673 -56154447 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1343 410 267 97 27 chr4 99475934 99476094 -56154026 - L1ME2 LINE L1 -827 5316 5147 9 1343 252 312 89 6 chr4 99476143 99476301 -56153819 - L1ME2 LINE L1 -943 5203 5033 9 1343 605 170 0 39 chr4 99476318 99476422 -56153698 + B1_Mus2 SINE Alu 2 101 -46 1 1343 246 279 62 25 chr4 99476420 99476501 -56153619 + B3A SINE B2 81 164 -34 1 1343 345 47 0 0 chr4 99476502 99476545 -56153575 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1343 22 35 0 0 chr4 99476610 99476639 -56153481 + AT_rich Low_complexity Low_complexity 1 29 0 1 1343 387 92 0 0 chr4 99477054 99477119 -56153001 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1343 308 243 0 54 chr4 99477767 99477841 -56152279 - B4 SINE B4 -209 83 14 1 1343 391 360 42 23 chr4 99478705 99478921 -56151199 + L1M4 LINE L1 3311 3530 -2616 1 1343 804 152 7 22 chr4 99479402 99479537 -56150583 - B1_Mus2 SINE Alu -14 133 1 1 1343 272 45 0 64 chr4 99479966 99480013 -56150107 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1343 1209 41 0 0 chr4 99480013 99480159 -56149961 - B1_Mus2 SINE Alu 0 147 2 1 1343 1189 55 0 0 chr4 99480273 99480419 -56149701 + B1_Mus2 SINE Alu 2 147 0 1 1343 237 132 0 0 chr4 99480419 99480457 -56149663 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 1 1343 284 290 9 48 chr4 99480609 99480620 -56149500 - B1_Mus1 SINE Alu -35 113 13 1 1343 438 191 128 0 chr4 99480620 99480714 -56149406 - ID_B1 SINE B4 -26 198 93 1 1343 21 71 0 0 chr4 99480856 99480898 -56149222 + AT_rich Low_complexity Low_complexity 1 42 0 1 1343 4846 66 14 35 chr4 99480898 99481592 -56148528 - L1_Mus3 LINE L1 0 6638 5959 1 1343 5682 15 0 3 chr4 99481602 99482250 -56147870 - L1Md_A LINE L1 0 6582 5937 1 1343 200 59 0 29 chr4 99482287 99482322 -56147798 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 1343 954 79 101 0 chr4 99482322 99482461 -56147659 - B2_Mm2 SINE B2 -42 153 1 1 1343 293 278 0 0 chr4 99482682 99482754 -56147366 - ID2 SINE ID -7 76 5 1 1344 3235 186 142 19 chr4 99483840 99484568 -56145552 + RLTR40 LTR ERVK 1 817 0 1 1344 446 317 8 0 chr4 99484925 99484943 -56145177 + ID_B1 SINE B4 73 196 -28 1 1344 498 248 29 0 chr4 99484943 99485048 -56145072 + B1F SINE Alu 11 118 -31 1 1344 2258 99 82 110 chr4 99485069 99485558 -56144562 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1344 667 276 109 36 chr4 99485566 99486035 -56144085 + L1MB3 LINE L1 5316 5818 -365 1 1344 38 0 0 0 chr4 99486259 99486297 -56143823 + AT_rich Low_complexity Low_complexity 1 38 0 1 1344 659 226 140 35 chr4 99486302 99486524 -56143596 + L1MB3 LINE L1 5821 6072 -111 1 1344 1990 126 28 0 chr4 99486524 99486841 -56143279 + ORR1A4 LTR MaLR 1 326 -3 1 1344 659 226 140 35 chr4 99486841 99486875 -56143245 + L1MB3 LINE L1 6073 6104 -79 1 1344 525 304 151 60 chr4 99487002 99487300 -56142820 + MTEa LTR MaLR 10 334 -45 1 1344 227 250 75 100 chr4 99487878 99487998 -56142122 + MIRc SINE MIR 100 216 -46 1 1344 203 115 37 37 chr4 99488728 99488782 -56141338 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 1 1344 1117 64 14 0 chr4 99488782 99488923 -56141197 - B1_Mus1 SINE Alu -5 143 1 1 1344 388 294 166 63 chr4 99489598 99489899 -56140221 - L1MEd LINE L1 -4887 1232 901 1 1344 369 261 0 98 chr4 99489920 99490022 -56140098 + PB1D7 SINE Alu 20 111 -9 1 1344 234 0 0 0 chr4 99490040 99490066 -56140054 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1344 576 263 0 0 chr4 99490243 99490361 -56139759 - ID_B1 SINE B4 -19 205 88 1 1344 778 174 192 16 chr4 99490448 99490635 -56139485 + ORR1D2 LTR MaLR 149 368 -2 1 1344 2010 270 41 30 chr4 99490637 99491372 -56138748 + ORR1D2-int LTR MaLR 1 764 -816 1 1344 195 42 0 0 chr4 99491372 99491396 -56138724 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1344 1227 316 63 63 chr4 99491396 99491598 -56138522 + ORR1D2-int LTR MaLR 765 958 -622 1 1344 195 42 0 0 chr4 99491709 99491733 -56138387 + (TTATA)n Simple_repeat Simple_repeat 5 28 0 1 1344 26 50 0 0 chr4 99491753 99491793 -56138327 + AT_rich Low_complexity Low_complexity 1 40 0 1 1344 1279 93 22 0 chr4 99491994 99492176 -56137944 + B2_Mm2 SINE B2 2 187 -8 1 1344 494 260 0 0 chr4 99492244 99492344 -56137776 + ID_B1 SINE B4 81 180 -44 1 1344 412 291 26 35 chr4 99492245 99492359 -56137761 + B1F1 SINE Alu 1 113 -36 1 1344 1057 217 5 5 chr4 99493777 99493990 -56136130 + B3 SINE B2 1 213 -3 1 1344 1158 111 184 0 chr4 99494122 99494312 -56135808 - URR1B DNA MER1_type 0 225 1 1 1344 657 263 72 19 chr4 99494394 99494603 -56135517 + ID_B1 SINE B4 1 220 -4 1 1344 195 69 0 0 chr4 99495116 99495145 -56134975 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1344 279 243 133 16 chr4 99497341 99497484 -56132636 + MIR SINE MIR 105 266 -2 1 1344 6804 169 50 8 chr4 99498581 99500000 -56130120 - Lx5 LINE L1 -36 7014 5532 1 1344 10039 199 127 114 chr4 99500000 99500919 -56129201 - L1_Mur2 LINE L1 -346 5531 4586 1 1344 1103 112 0 0 chr4 99500919 99501071 -56129049 + B2_Mm2 SINE B2 1 152 -43 2 1344 275 0 29 0 chr4 99501074 99501109 -56129011 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 3 1344 10039 199 127 114 chr4 99501109 99503336 -56126784 - L1_Mur2 LINE L1 -1295 4582 2417 1 1344 426 39 0 0 chr4 99503336 99503388 -56126732 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1344 10039 199 126 113 chr4 99503388 99504364 -56125756 - L1_Mur2 LINE L1 -3461 2416 1207 1 1344 1187 28 7 0 chr4 99504364 99504506 -56125614 + B1_Mm SINE Alu 1 143 -4 5 1344 1528 211 46 57 chr4 99504506 99504813 -56125307 - L1_Mur2 LINE L1 -5880 1206 893 1 1344 200 0 100 0 chr4 99505012 99505042 -56125078 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 6 1344 27 0 0 0 chr4 99505076 99505103 -56125017 + AT_rich Low_complexity Low_complexity 1 27 0 7 1344 628 210 62 25 chr4 99505147 99505320 -56124800 - B3 SINE B2 -9 184 1 8 1344 1485 28 50 0 chr4 99506560 99506741 -56123379 - B2_Mm1t SINE B2 -2 191 2 9 1344 411 243 28 37 chr4 99506863 99506970 -56123150 + B1F SINE Alu 1 106 -43 1 1344 363 289 46 15 chr4 99507457 99507587 -56122533 + RSINE1 SINE B4 1 134 -31 1 1344 761 237 19 0 chr4 99507768 99507924 -56122196 + RSINE1 SINE B4 3 161 -4 1 1344 255 31 0 0 chr4 99507924 99507956 -56122164 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1 1344 336 279 101 0 chr4 99508722 99508801 -56121319 - RSINE1 SINE B4 -6 159 73 1 1344 729 146 0 0 chr4 99551555 99551678 -56078442 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 1 1344 527 299 29 7 chr4 99551703 99551841 -56078279 - RSINE1 SINE B4 -24 141 1 1 1344 751 200 52 0 chr4 99552725 99552860 -56077260 - B1_Mur4 SINE Alu 0 150 9 1 1344 196 317 143 46 chr4 99553068 99553243 -56076877 + MIRb SINE MIR 47 238 -30 1 1344 180 176 0 0 chr4 99553476 99553510 -56076610 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 1 1344 198 118 0 0 chr4 99554919 99554953 -56075167 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 1344 312 267 178 0 chr4 99555454 99555544 -56074576 + RSINE1 SINE B4 4 109 -56 2 1344 444 271 78 0 chr4 99555811 99555940 -56074180 - B1F SINE Alu -8 141 3 2 1344 1968 106 0 4 chr4 99556561 99556836 -56073284 + Lx2 LINE L1 6086 6359 -638 2 1344 422 140 11 23 chr4 99556836 99556924 -56073196 + Lx2 LINE L1 6897 6983 -17 2 1344 543 266 0 0 chr4 99556977 99557090 -56073030 + PB1D7 SINE Alu 1 113 -7 2 1344 26 30 0 0 chr4 99557164 99557197 -56072923 + AT_rich Low_complexity Low_complexity 1 33 0 2 1344 24 0 0 0 chr4 99557472 99557496 -56072624 + AT_rich Low_complexity Low_complexity 1 24 0 2 1344 1390 81 5 21 chr4 99557649 99557838 -56072282 - B2_Mm1t SINE B2 -7 186 1 2 1344 24 67 0 0 chr4 99557921 99557966 -56072154 + AT_rich Low_complexity Low_complexity 1 45 0 2 1344 32 67 0 0 chr4 99558060 99558120 -56072000 + AT_rich Low_complexity Low_complexity 1 60 0 2 1344 403 298 35 0 chr4 99558156 99558270 -56071850 + B1_Mur1 SINE Alu 1 118 -31 3 1344 1074 78 26 0 chr4 99558290 99558443 -56071677 - B2_Mm2 SINE B2 -6 189 33 3 1344 352 233 65 22 chr4 99558871 99558963 -56071157 - PB1D7 SINE Alu -24 96 1 3 1344 8310 85 1 3 chr4 99559226 99560791 -56069329 - L1_Mus3 LINE L1 0 6638 5076 3 1344 808 232 36 31 chr4 99560824 99561020 -56069100 + B3A SINE B2 2 198 0 3 1344 326 239 0 14 chr4 99561093 99561165 -56068955 - L2a LINE L2 -6 3420 3350 3 1344 192 40 0 0 chr4 99561584 99561609 -56068511 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1344 454 235 168 34 chr4 99561612 99561731 -56068389 - B1_Mur2 SINE Alu -14 135 1 3 1344 341 276 29 102 chr4 99562059 99562196 -56067924 + RSINE1 SINE B4 14 140 -25 3 1344 23 0 0 0 chr4 99562240 99562263 -56067857 + AT_rich Low_complexity Low_complexity 1 23 0 3 1344 239 291 19 19 chr4 99562479 99562584 -56067536 - L1M2 LINE L1 -653 5638 5534 4 1344 720 294 29 130 chr4 99562605 99563196 -56066924 - L1_Mur3 LINE L1 -1207 4673 4143 4 1344 243 0 0 0 chr4 99563196 99563223 -56066897 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1344 1120 80 7 0 chr4 99563223 99563360 -56066760 - B1_Mm SINE Alu -9 138 1 4 1344 24 0 0 0 chr4 99563360 99563384 -56066736 + AT_rich Low_complexity Low_complexity 1 24 0 4 1344 249 215 0 0 chr4 99563550 99563643 -56066477 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 1344 1167 267 85 57 chr4 99563649 99564178 -56065942 - Lx8 LINE L1 -1571 5902 5320 4 1344 922 156 224 6 chr4 99564178 99564352 -56065768 + B3 SINE B2 1 212 -4 4 1344 1167 265 89 57 chr4 99564352 99564386 -56065734 - Lx8 LINE L1 -528 5319 5292 4 1344 186 256 23 0 chr4 99564599 99564642 -56065478 - L2a LINE L2 -86 3340 3297 3 1344 339 278 67 0 chr4 99564778 99564868 -56065252 + PB1D7 SINE Alu 18 113 -7 4 1344 487 278 25 25 chr4 99564876 99564994 -56065126 + B1F1 SINE Alu 10 127 -22 4 1344 405 102 0 0 chr4 99565043 99565102 -56065018 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1344 12369 82 31 7 chr4 99565253 99567507 -56062613 - L1_Mus2 LINE L1 0 6566 4241 5 1344 2950 38 64 6 chr4 99567507 99567851 -56062269 - RLTR10B2 LTR ERVK -1 364 1 5 1344 12369 98 38 5 chr4 99567851 99568075 -56062045 - L1_Mus2 LINE L1 -1643 4240 4017 5 1344 562 334 83 62 chr4 99568093 99568513 -56061607 - MLT1H LTR MaLR -5 574 150 5 1344 556 256 132 11 chr4 99568748 99568930 -56061190 + B3 SINE B2 7 210 -6 5 1344 180 111 0 0 chr4 99571163 99571190 -56058930 + (TATG)n Simple_repeat Simple_repeat 1 27 0 5 1344 235 701 7 0 chr4 99571199 99571343 -56058777 + (TA)n Simple_repeat Simple_repeat 1 145 0 5 1344 829 173 43 0 chr4 99571356 99571495 -56058625 - B1_Mur3 SINE Alu -1 148 4 5 1344 396 59 0 0 chr4 99571977 99572028 -56058092 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 5 1344 1013 61 0 15 chr4 99572028 99572162 -56057958 - B1_Mus1 SINE Alu 0 148 17 5 1344 342 295 45 90 chr4 99572437 99572571 -56057549 + B1_Mur1 SINE Alu 22 149 0 6 1344 351 225 80 9 chr4 99573487 99573599 -56056521 + L1MA7 LINE L1 6144 6263 -28 6 1344 262 81 0 0 chr4 99573765 99573802 -56056318 - tRNA-Cys-TGY tRNA tRNA -38 37 1 6 1344 864 259 47 0 chr4 99573988 99574181 -56055939 + B3 SINE B2 1 202 -14 6 1344 21 36 0 0 chr4 99574210 99574238 -56055882 + AT_rich Low_complexity Low_complexity 1 28 0 6 1344 286 243 54 45 chr4 99574511 99574623 -56055497 + B3 SINE B2 86 198 -18 6 1344 192 77 0 0 chr4 99574656 99574682 -56055438 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1344 1084 283 55 31 chr4 99574728 99575068 -56055052 + MTD LTR MaLR 30 405 -14 6 1344 189 0 0 0 chr4 99575076 99575097 -56055023 + (TTG)n Simple_repeat Simple_repeat 3 23 0 6 1344 539 312 0 34 chr4 99575098 99575244 -56054876 - ID_B1 SINE B4 -8 216 76 6 1344 275 283 16 24 chr4 99575252 99575375 -56054745 - L1MC LINE L1 -1045 5101 4980 7 1344 306 0 0 0 chr4 99575375 99575409 -56054711 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1344 1133 116 0 0 chr4 99575409 99575556 -56054564 - B1_Mus2 SINE Alu 0 147 1 7 1344 328 261 99 28 chr4 99575559 99575701 -56054419 - L1MC LINE L1 -1156 4990 4839 7 1344 4964 45 24 0 chr4 99575760 99576333 -56053787 + LTRIS_Mus LTR ERV1 1 587 0 7 1344 351 277 11 119 chr4 99577789 99577965 -56052155 + RMER4B LTR ERVK 7 163 -422 7 1344 231 44 67 0 chr4 99578248 99578293 -56051827 + (TTTTTG)n Simple_repeat Simple_repeat 4 51 0 7 1344 185 289 39 0 chr4 99578310 99578362 -56051758 + MIR SINE MIR 189 242 -20 7 1344 1300 211 0 0 chr4 99578579 99578788 -56051332 - B3 SINE B2 -6 210 2 7 1344 3984 76 0 2 chr4 99578808 99579298 -56050822 + L1Md_T LINE L1 6093 6581 -1 7 1344 438 176 0 0 chr4 99579380 99579465 -56050655 + CT-rich Low_complexity Low_complexity 1 85 0 7 1344 743 183 34 27 chr4 99579523 99579669 -56050451 - B1_Mur3 SINE Alu 0 149 3 8 1344 1401 92 0 26 chr4 99579682 99579871 -56050249 - B2_Mm2 SINE B2 -9 186 3 8 1344 411 321 9 9 chr4 99580170 99580277 -56049843 + ID_B1 SINE B4 1 107 -117 8 1344 1923 187 84 15 chr4 99580338 99580730 -56049390 - MTD LTR MaLR 0 419 1 8 1344 279 300 37 74 chr4 99581104 99581212 -56048908 + B1F SINE Alu 19 122 -27 8 1344 352 229 360 7 chr4 99581602 99581758 -56048362 - B3 SINE B2 -4 212 2 8 1344 366 323 29 69 chr4 99581863 99582036 -56048084 + MER44D DNA MER2_type 37 202 -503 8 1344 474 132 0 0 chr4 99582401 99582469 -56047651 + U4 snRNA snRNA 1 68 -77 8 1344 23 0 0 0 chr4 99582561 99582584 -56047536 + AT_rich Low_complexity Low_complexity 1 23 0 8 1344 23 0 0 0 chr4 99582754 99582777 -56047343 + AT_rich Low_complexity Low_complexity 1 23 0 8 1344 277 241 17 0 chr4 99583824 99583882 -56046238 - ID_B1 SINE B4 -23 201 143 9 1344 338 246 271 23 chr4 99584009 99584138 -56045982 - RSINE1 SINE B4 -4 161 1 9 1344 216 220 184 29 chr4 99584627 99584730 -56045390 + B3A SINE B2 2 120 -78 9 1344 367 270 257 17 chr4 99584647 99584843 -56045277 + B4A SINE B4 44 286 -6 9 1344 812 207 14 7 chr4 99584892 99585038 -56045082 - B1_Mur1 SINE Alu -2 147 1 9 1344 23 0 0 0 chr4 99585350 99585373 -56044747 + AT_rich Low_complexity Low_complexity 1 23 0 9 1344 1239 62 7 0 chr4 99585526 99585671 -56044449 - B1_Mus2 SINE Alu -1 146 1 9 1344 257 292 42 0 chr4 99587248 99587320 -56042800 + ID4 SINE ID 9 83 0 9 1344 1648 176 64 13 chr4 99587916 99588227 -56041893 + MTD LTR MaLR 93 419 0 9 1344 505 264 114 47 chr4 99588322 99588533 -56041587 + RMER15 LTR ERVL 348 572 -3 9 1344 224 324 65 56 chr4 99588703 99588811 -56041309 - L2b LINE L2 -31 3356 3230 1 1344 263 104 0 20 chr4 99588974 99589023 -56041097 + (GGGAGA)n Simple_repeat Simple_repeat 5 52 0 1 1344 422 276 41 0 chr4 99589030 99589128 -56040992 - RSINE1 SINE B4 -27 138 37 1 1344 237 33 0 0 chr4 99589400 99589430 -56040690 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1344 1215 36 0 7 chr4 99589430 99589571 -56040549 - B1_Mus1 SINE Alu -8 140 1 1 1344 2255 273 106 105 chr4 99589623 99590094 -56040026 - L1_Rod LINE L1 -2621 3259 2784 1 1344 1215 82 0 0 chr4 99590094 99590241 -56039879 + B1_Mus1 SINE Alu 1 147 -1 1 1344 2255 273 106 105 chr4 99590241 99590721 -56039399 - L1_Rod LINE L1 -3097 2783 2274 1 1344 561 168 28 0 chr4 99590721 99590828 -56039292 - B3 SINE B2 -105 111 2 1 1344 2255 273 106 105 chr4 99590828 99591546 -56038574 - L1_Rod LINE L1 -3097 2273 1508 1 1344 261 0 0 0 chr4 99591546 99591575 -56038545 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1344 2255 281 104 57 chr4 99591575 99592061 -56038059 - L1_Rod LINE L1 -4373 1507 929 1 1344 911 327 63 44 chr4 99592481 99592539 -56037581 - MLT1D LTR MaLR -8 497 439 1 1344 1420 102 16 0 chr4 99592539 99592725 -56037395 + B2_Mm2 SINE B2 2 190 -5 1 1344 911 327 63 44 chr4 99592725 99592941 -56037179 - MLT1D LTR MaLR -67 438 221 1 1344 550 290 117 73 chr4 99592941 99593283 -56036837 + ORR1E LTR MaLR 1 357 -2 1 1344 911 327 63 44 chr4 99593283 99593483 -56036637 - MLT1D LTR MaLR -285 220 13 1 1344 21 0 0 0 chr4 99593629 99593650 -56036470 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 572 164 9 0 chr4 99593896 99594006 -56036114 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 1344 207 0 0 0 chr4 99594264 99594287 -56035833 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1344 523 242 112 15 chr4 99594961 99595095 -56035025 + B3A SINE B2 2 148 -50 1 1344 664 256 35 89 chr4 99595163 99595420 -56034700 + B4 SINE B4 50 292 0 1 1344 401 344 16 57 chr4 99595517 99595761 -56034359 + L2c LINE L2 2224 2457 -962 1 1344 771 207 73 27 chr4 99596078 99596297 -56033823 + L1MB3 LINE L1 5836 6064 -119 1 1344 277 250 30 30 chr4 99596303 99596369 -56033751 + tRNA-Ala-GCY_ tRNA tRNA 4 69 -6 1 1344 371 236 37 96 chr4 99596373 99596467 -56033653 + L1MB3 LINE L1 6053 6134 -49 1 1344 736 181 241 24 chr4 99596467 99596637 -56033483 - B3 SINE B2 -8 208 2 1 1344 371 236 37 96 chr4 99596637 99596678 -56033442 + L1MB3 LINE L1 6135 6180 -3 1 1344 205 339 64 58 chr4 99596816 99597004 -56033116 + L2c LINE L2 3027 3215 -172 1 1344 24 0 0 0 chr4 99597385 99597409 -56032711 + AT_rich Low_complexity Low_complexity 1 24 0 1 1344 2069 156 176 9 chr4 99597667 99598088 -56032032 + RMER15 LTR ERVL 3 493 -82 1 1344 928 196 115 94 chr4 99598122 99598409 -56031711 + RMER21B LTR ERV1 275 567 -275 1 1344 249 250 0 84 chr4 99598415 99598498 -56031622 + RMER21B LTR ERV1 760 835 -112 1 1344 452 134 0 0 chr4 99598506 99598573 -56031547 + RMER15 LTR ERVL 487 553 -22 1 1344 522 0 0 0 chr4 99598670 99598728 -56031392 + (TATG)n Simple_repeat Simple_repeat 4 61 0 1 1344 398 277 80 0 chr4 99598739 99598851 -56031269 + RSINE1 SINE B4 41 161 -4 1 1344 568 250 112 52 chr4 99599120 99599352 -56030768 - MER95 LTR ERV -185 246 1 1 1344 334 291 90 26 chr4 99599357 99599481 -56030639 + MLT1E3 LTR MaLR 457 581 -43 1 1344 522 0 0 0 chr4 99599481 99599539 -56030581 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1344 334 291 90 26 chr4 99599539 99599569 -56030551 + MLT1E3 LTR MaLR 582 620 -4 1 1344 850 203 99 43 chr4 99599719 99599951 -56030169 + RMER21B LTR ERV1 323 567 -275 1 1344 244 280 0 74 chr4 99599956 99600037 -56030083 + RMER21B LTR ERV1 761 835 -112 1 1344 465 66 0 0 chr4 99600889 99600950 -56029170 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1344 210 37 0 0 chr4 99601134 99601161 -56028959 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1344 1261 48 7 0 chr4 99601432 99601578 -56028542 - B1_Mus1 SINE Alu 0 148 2 1 1344 199 361 36 50 chr4 99603255 99603395 -56026725 - MIR SINE MIR -34 228 91 1 1344 1161 82 0 7 chr4 99605104 99605252 -56024868 - B1_Mus2 SINE Alu 0 147 1 1 1344 485 276 131 0 chr4 99605282 99605427 -56024693 - RSINE1 SINE B4 0 165 2 1 1344 398 259 70 160 chr4 99605856 99606012 -56024108 - B4 SINE B4 0 292 151 1 1344 240 183 33 0 chr4 99606263 99606323 -56023797 + A-rich Low_complexity Low_complexity 1 62 0 1 1344 195 146 0 0 chr4 99606374 99606415 -56023705 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1344 819 281 66 15 chr4 99606482 99606753 -56023367 - B4 SINE B4 -4 288 4 1 1344 210 37 0 0 chr4 99606883 99606910 -56023210 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1344 1321 28 0 0 chr4 99606913 99607057 -56023063 - B1_Mus1 SINE Alu -4 144 1 1 1344 214 258 132 29 chr4 99607077 99607145 -56022975 - ID4_ SINE ID -8 75 1 1 1344 303 204 40 20 chr4 99607302 99607400 -56022720 + B3A SINE B2 1 98 -118 1 1344 1632 189 136 3 chr4 99607907 99608237 -56021883 - MTC LTR MaLR -47 374 1 1 1344 2381 184 176 7 chr4 99608393 99608499 -56021621 - Lx9 LINE L1 -11 7633 7517 1 1344 225 0 0 0 chr4 99608499 99608524 -56021596 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1344 2381 184 176 7 chr4 99608524 99608980 -56021140 - Lx9 LINE L1 -128 7516 6978 1 1344 430 283 0 26 chr4 99609158 99609274 -56020846 + PB1D10 SINE Alu 5 117 0 1 1344 298 20 82 0 chr4 99610302 99610351 -56019769 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 1 1344 405 0 0 0 chr4 99610354 99610399 -56019721 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1344 279 302 327 5 chr4 99610474 99610685 -56019435 - Helitron3Na_Mam RC Helitron -93 393 115 1 1344 255 302 72 10 chr4 99611828 99611925 -56018195 - ORR1E LTR MaLR -256 103 1 1 1344 1342 292 12 39 chr4 99612414 99612821 -56017299 + MARNA DNA Mariner 28 423 -163 1 1344 680 273 127 104 chr4 99614136 99614626 -56015494 - MLT1D LTR MaLR -4 501 1 1 1345 262 232 86 14 chr4 99615520 99615590 -56014530 - ID SINE ID -149 75 1 1 1345 390 238 59 59 chr4 99616229 99616381 -56013739 - L1MA5A LINE L1 -438 5859 5708 1 1345 308 333 33 6 chr4 99616391 99616566 -56013554 - L1_Mm LINE L1 -531 5658 5449 1 1345 627 221 84 0 chr4 99617008 99617139 -56012981 - B1F1 SINE Alu -7 142 1 1 1345 212 262 0 16 chr4 99618006 99618068 -56012052 - ID4 SINE ID -21 62 2 1 1345 314 296 6 85 chr4 99618104 99618281 -56011839 - MLT1B LTR MaLR -120 270 108 1 1345 231 255 20 0 chr4 99618281 99618332 -56011788 + MIR SINE MIR 127 178 -84 1 1345 428 153 12 0 chr4 99618672 99618757 -56011363 + CT-rich Low_complexity Low_complexity 3 88 0 1 1345 1885 128 96 15 chr4 99618797 99619131 -56010989 - ORR1D1 LTR MaLR -13 361 1 1 1345 470 264 30 46 chr4 99619153 99619284 -56010836 - B1F SINE Alu -1 148 20 1 1345 325 293 40 79 chr4 99619154 99619306 -56010814 - ID_B1 SINE B4 0 224 79 1 1345 198 136 43 43 chr4 99619607 99619653 -56010467 - MIRb SINE MIR -28 240 195 1 1345 288 250 0 26 chr4 99620042 99620120 -56010000 - L1MA6 LINE L1 -1 6299 6224 1 1345 375 60 0 0 chr4 99620770 99620820 -56009300 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1345 610 279 72 12 chr4 99621111 99621278 -56008842 - ID_B1 SINE B4 -5 219 43 1 1345 321 303 85 51 chr4 99621364 99621417 -56008703 + MER2B DNA MER2_type 145 197 -139 1 1345 5226 55 0 2 chr4 99621417 99622059 -56008061 - L1Md_F2 LINE L1 -1 6581 5941 1 1345 321 294 88 48 chr4 99622059 99622147 -56007973 + MER2B DNA MER2_type 198 288 -48 1 1345 359 309 79 29 chr4 99622168 99622308 -56007812 - MIR SINE MIR -96 166 20 1 1345 301 233 14 0 chr4 99622974 99623047 -56007073 + ID4 SINE ID 1 74 -9 1 1345 695 108 0 9 chr4 99624926 99625038 -56005082 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 1 1345 3620 133 57 3 chr4 99626177 99626742 -56003378 + MERVL_2A-int LTR ERVL 2685 3279 -2482 1 1345 549 265 58 31 chr4 99627268 99627459 -56002661 + B3A SINE B2 3 198 0 1 1345 358 198 179 8 chr4 99627505 99627622 -56002498 + B1F SINE Alu 12 148 -1 1 1345 378 0 0 0 chr4 99629753 99629795 -56000325 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1345 22 0 0 0 chr4 99629865 99629887 -56000233 + AT_rich Low_complexity Low_complexity 1 22 0 1 1345 205 186 0 23 chr4 99631132 99631176 -55998944 + CT-rich Low_complexity Low_complexity 3 45 0 1 1345 612 234 96 18 chr4 99631291 99631509 -55998611 - L1MB4 LINE L1 -131 6049 5815 1 1345 395 263 21 10 chr4 99631534 99631630 -55998490 + PB1D10 SINE Alu 1 97 -20 1 1345 707 269 106 35 chr4 99631757 99632069 -55998051 - L1MB2 LINE L1 -18 6153 5820 1 1345 226 214 164 43 chr4 99632137 99632166 -55997954 - Lx LINE L1 -95 5785 5757 1 1345 342 0 0 0 chr4 99632166 99632204 -55997916 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1345 226 201 171 45 chr4 99632204 99632282 -55997838 - Lx LINE L1 -893 5761 5667 1 1345 180 111 0 0 chr4 99632912 99632939 -55997181 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1345 203 115 18 55 chr4 99633114 99633169 -55996951 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 1 1345 389 305 0 0 chr4 99634429 99634511 -55995609 + PB1D10 SINE Alu 29 110 -7 1 1345 180 0 0 0 chr4 99634518 99634538 -55995582 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1345 207 0 0 0 chr4 99635010 99635033 -55995087 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1345 250 369 91 45 chr4 99635132 99635308 -55994812 - MIR SINE MIR -58 204 21 1 1345 7389 51 4 1 chr4 99637677 99638580 -55991540 - L1Md_F2 LINE L1 -1 6581 5676 1 1345 189 0 0 0 chr4 99638969 99638990 -55991130 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1345 996 178 55 20 chr4 99640258 99640459 -55989661 + B3 SINE B2 1 208 -8 1 1345 212 289 242 0 chr4 99640889 99641017 -55989103 - MIR SINE MIR -35 227 69 1 1345 224 227 76 0 chr4 99641928 99641994 -55988126 - ID SINE ID -142 82 12 1 1345 558 142 226 0 chr4 99643817 99643923 -55986197 + B1_Mus1 SINE Alu 1 130 -18 1 1345 584 184 17 17 chr4 99644453 99644630 -55985490 + (CATA)n Simple_repeat Simple_repeat 3 179 0 1 1345 211 246 45 15 chr4 99644936 99645002 -55985118 + L2a LINE L2 3276 3343 -83 1 1345 276 30 0 0 chr4 99646995 99647028 -55983092 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 1 1345 279 276 73 45 chr4 99648273 99648383 -55981737 + PB1D10 SINE Alu 4 116 -1 2 1345 725 251 22 0 chr4 99648383 99648562 -55981558 + B3A SINE B2 1 183 -15 2 1345 28 29 0 0 chr4 99648581 99648616 -55981504 + AT_rich Low_complexity Low_complexity 1 35 0 2 1345 1415 222 117 5 chr4 99648877 99649252 -55980868 + MTD LTR MaLR 1 417 -2 2 1345 282 29 0 0 chr4 99649861 99649896 -55980224 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1345 183 42 0 0 chr4 99649924 99649948 -55980172 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1345 617 138 25 17 chr4 99649956 99650074 -55980046 - B1_Mus2 SINE Alu 0 147 29 2 1345 369 365 75 37 chr4 99650168 99650490 -55979630 - L1M5 LINE L1 -529 5595 5262 2 1345 38 32 0 16 chr4 99650506 99650541 -55979579 + AT_rich Low_complexity Low_complexity 1 35 0 2 1345 396 139 13 0 chr4 99650541 99650620 -55979500 - Lx4A LINE L1 -1 7057 6978 2 1345 38 32 0 16 chr4 99650620 99650647 -55979473 + AT_rich Low_complexity Low_complexity 1 27 0 2 1345 329 241 11 67 chr4 99650873 99650962 -55979158 - ID_B1 SINE B4 -62 162 79 2 1345 256 267 151 9 chr4 99651882 99651988 -55978132 + MIRb SINE MIR 29 149 -119 2 1345 554 225 0 55 chr4 99652579 99652706 -55977414 - PB1D9 SINE Alu 0 120 1 2 1345 203 105 0 50 chr4 99652714 99652754 -55977366 + T-rich Low_complexity Low_complexity 3 40 0 2 1345 207 0 0 0 chr4 99653764 99653787 -55976333 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1345 26 0 0 0 chr4 99654855 99654881 -55975239 + AT_rich Low_complexity Low_complexity 1 26 0 2 1345 642 134 24 0 chr4 99656965 99657092 -55973028 + CT-rich Low_complexity Low_complexity 2 131 0 2 1345 434 281 118 86 chr4 99657096 99657341 -55972779 - B4A SINE B4 0 292 40 2 1345 324 253 81 0 chr4 99657601 99657688 -55972432 + RSINE1 SINE B4 53 146 -19 2 1345 194 222 22 0 chr4 99658555 99658600 -55971520 + MIR3 SINE MIR 117 162 -46 2 1345 947 180 84 0 chr4 99658715 99658893 -55971227 - B2_Mm2 SINE B2 -1 194 2 2 1345 257 325 122 17 chr4 99660244 99660448 -55969672 + MIR SINE MIR 1 241 -27 2 1345 264 298 86 9 chr4 99660760 99660865 -55969255 - MIR SINE MIR -21 241 129 2 1345 317 306 62 18 chr4 99662848 99662961 -55967159 + PB1 SINE Alu 6 123 -4 2 1345 379 331 156 34 chr4 99663682 99663951 -55966169 - MLT1G3 LTR MaLR -15 580 279 2 1345 1089 89 7 0 chr4 99664158 99664304 -55965816 - B1_Mus1 SINE Alu 0 148 2 2 1345 417 264 22 11 chr4 99664587 99664679 -55965441 + ID_B1 SINE B4 2 94 -130 2 1345 405 0 0 0 chr4 99664970 99665015 -55965105 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1345 548 262 70 45 chr4 99665247 99665403 -55964717 + RSINE1 SINE B4 6 165 0 2 1345 669 235 91 119 chr4 99665450 99665769 -55964351 + L1M2 LINE L1 5254 5563 -737 2 1345 1101 172 135 9 chr4 99665769 99666044 -55964076 - ORR1B2 LTR MaLR -53 317 1 2 1345 360 0 0 0 chr4 99666164 99666204 -55963916 + (TATG)n Simple_repeat Simple_repeat 3 42 0 2 1345 416 284 158 45 chr4 99666396 99666707 -55963413 + RMER20B LTR ERVK 184 511 -5 2 1345 36361 40 0 3 chr4 99667118 99672323 -55957797 + L1Md_T LINE L1 305 5588 -298 2 1345 8644 29 1 0 chr4 99672324 99673319 -55956801 + L1Md_T LINE L1 5590 6585 0 2 1345 916 219 47 24 chr4 99673331 99673542 -55956578 - B3 SINE B2 0 216 1 2 1345 272 261 22 22 chr4 99674156 99674246 -55955874 - RLTR16 LTR ERVK -415 90 1 2 1345 1672 188 42 0 chr4 99674585 99674915 -55955205 + MTC LTR MaLR 1 344 -77 2 1345 859 121 17 112 chr4 99674917 99675150 -55954970 + MTC-int LTR MaLR 1048 1258 0 2 1345 2114 158 108 0 chr4 99675150 99675530 -55954590 + MTC LTR MaLR 1 421 0 2 1345 232 325 110 8 chr4 99675535 99675653 -55954467 + B4 SINE B4 127 256 -36 2 1345 235 221 167 13 chr4 99676196 99676274 -55953846 - MamGypLTR1a LTR Gypsy -18 766 677 2 1345 666 210 113 15 chr4 99676287 99676490 -55953630 - Lx6 LINE L1 0 7460 7238 2 1345 248 279 58 25 chr4 99676536 99676631 -55953489 - MIR SINE MIR -105 171 69 2 1345 479 184 335 19 chr4 99676651 99676806 -55953314 - ID_B1 SINE B4 -18 206 3 2 1345 583 269 111 12 chr4 99677338 99677500 -55952620 - B3 SINE B2 -25 191 14 2 1345 239 255 158 11 chr4 99677635 99677730 -55952390 - MIRc SINE MIR -116 152 44 2 1345 377 317 51 25 chr4 99677740 99677976 -55952144 - L1MB7 LINE L1 -22 6162 5921 2 1345 390 107 0 0 chr4 99678131 99678187 -55951933 - L1_Mur2 LINE L1 -1041 4836 4781 2 1345 1962 128 12 19 chr4 99678188 99678507 -55951613 + Lx3C LINE L1 6660 6976 0 2 1345 388 306 47 58 chr4 99678855 99679046 -55951074 - L1MEd LINE L1 -5833 286 98 2 1345 450 254 20 66 chr4 99679257 99679409 -55950711 - B1_Mur1 SINE Alu -1 148 4 2 1345 738 245 15 35 chr4 99679929 99680128 -55949992 + B3A SINE B2 4 198 0 2 1345 332 382 21 11 chr4 99680129 99680317 -55949803 + MLT1K LTR MaLR 398 587 -8 2 1345 509 30 15 0 chr4 99682307 99682374 -55947746 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1345 333 265 84 11 chr4 99682447 99682629 -55947491 - MIRc SINE MIR -18 244 52 2 1345 342 277 26 10 chr4 99682896 99683009 -55947111 + B1F SINE Alu 1 119 -1 2 1345 288 350 51 74 chr4 99683674 99683850 -55946270 - LTR33A LTR ERVL -340 180 9 2 1345 225 194 56 69 chr4 99684591 99684663 -55945457 - L2c LINE L2 -36 3351 3281 2 1345 514 365 11 5 chr4 99684846 99685033 -55945087 - B4A SINE B4 -104 188 1 2 1345 7661 62 1 1 chr4 99685854 99686809 -55943311 - L1_Mm LINE L1 -230 5653 4699 2 1345 745 301 49 46 chr4 99686986 99687450 -55942670 + MLT2B4 LTR ERVL 2 464 0 2 1345 374 307 35 35 chr4 99687680 99687849 -55942271 + LTR16E1 LTR ERVL 370 538 0 2 1345 315 353 185 8 chr4 99688506 99688749 -55941371 - Tigger7 DNA MER2_type -2197 294 9 2 1345 39513 47 8 1 chr4 99689173 99695698 -55934422 - L1Md_T LINE L1 0 6585 101 2 1345 318 288 120 0 chr4 99695712 99695837 -55934283 - MIRb SINE MIR -17 251 112 2 1345 494 245 0 10 chr4 99696075 99696279 -55933841 + (TCCA)n Simple_repeat Simple_repeat 1 201 0 2 1345 504 310 63 16 chr4 99696548 99696738 -55933382 + B4A SINE B4 34 232 -60 2 1345 603 40 0 0 chr4 99696776 99696850 -55933270 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1345 184 250 57 29 chr4 99697209 99697279 -55932841 + L3 LINE CR1 2502 2573 -1916 2 1345 216 246 15 62 chr4 99697307 99697372 -55932748 - ID4 SINE ID -9 74 13 2 1345 435 224 46 39 chr4 99697746 99697876 -55932244 + B1F SINE Alu 18 148 -1 2 1345 384 263 0 0 chr4 99697888 99697964 -55932156 + ID4_ SINE ID 5 80 -3 2 1345 1046 113 0 16 chr4 99698583 99698888 -55931232 + (GAAA)n Simple_repeat Simple_repeat 1 300 0 2 1345 308 24 24 0 chr4 99699338 99699379 -55930741 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 2 1345 254 239 14 40 chr4 99699447 99699521 -55930599 - MADE2 DNA Mariner -5 75 4 2 1345 286 313 67 20 chr4 99699603 99699753 -55930367 - MER5A1 DNA MER1_type -5 161 5 2 1345 566 51 13 0 chr4 99700141 99700219 -55929901 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1345 414 0 0 0 chr4 99700253 99700299 -55929821 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2 1345 371 186 0 0 chr4 99700457 99700527 -55929593 - ID4_ SINE ID -9 74 5 2 1345 258 192 0 0 chr4 99700818 99700870 -55929250 + A-rich Low_complexity Low_complexity 1 52 0 2 1345 545 266 98 29 chr4 99702163 99702368 -55927752 + MLT1A0 LTR MaLR 1 219 -146 2 1345 420 257 0 0 chr4 99702600 99702701 -55927419 + MLT1A0 LTR MaLR 265 365 0 2 1345 181 375 69 0 chr4 99703258 99703330 -55926790 + MIRm SINE MIR 199 275 -1 2 1345 232 275 83 10 chr4 99704534 99704649 -55925471 + MIRb SINE MIR 19 141 -135 2 1345 197 336 167 9 chr4 99705861 99706071 -55924049 + L2a LINE L2 3097 3339 -87 2 1345 375 270 25 8 chr4 99706197 99706327 -55923793 - MIRb SINE MIR -100 168 32 2 1345 480 77 0 0 chr4 99706886 99706951 -55923169 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1345 571 245 47 61 chr4 99707492 99707705 -55922415 - B3 SINE B2 -6 210 1 2 1345 201 184 26 0 chr4 99709102 99709140 -55920980 + CT-rich Low_complexity Low_complexity 1 39 0 2 1345 485 110 40 0 chr4 99710179 99710279 -55919841 + (AGGGGG)n Simple_repeat Simple_repeat 6 109 0 2 1345 327 49 0 0 chr4 99710336 99710377 -55919743 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1345 233 341 101 17 chr4 99710639 99710818 -55919302 + LTR16A LTR ERVL 157 350 -101 2 1345 383 214 0 0 chr4 99710956 99711026 -55919094 + HERV16-int LTR ERVL 74 143 -4853 2 1345 299 393 10 24 chr4 99711688 99711894 -55918226 + HERV16-int LTR ERVL 1015 1217 -3779 2 1345 283 369 69 39 chr4 99712797 99713028 -55917092 + LTR16A LTR ERVL 36 273 -178 2 1345 672 216 61 0 chr4 99713285 99713433 -55916687 + B3 SINE B2 1 157 -59 2 1345 874 288 68 0 chr4 99713433 99713596 -55916524 + L1_Mur3 LINE L1 5570 5739 -141 2 1345 526 290 45 121 chr4 99713596 99713910 -55916210 - B4A SINE B4 -2 290 1 2 1345 874 288 68 0 chr4 99713910 99714027 -55916093 + L1_Mur3 LINE L1 5740 5867 -13 2 1345 382 272 88 0 chr4 99715110 99715235 -55914885 + B3A SINE B2 7 142 -56 2 1345 465 99 0 0 chr4 99715241 99715322 -55914798 + (CACG)n Simple_repeat Simple_repeat 1 81 0 2 1345 1264 117 92 216 chr4 99715954 99716334 -55913786 + Lx3B LINE L1 6637 6969 -4 2 1345 228 207 0 33 chr4 99716376 99716436 -55913684 + MLT1A1 LTR MaLR 346 403 -5 2 1345 270 0 0 0 chr4 99716626 99716656 -55913464 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1345 234 213 16 16 chr4 99717440 99717502 -55912618 + MIR SINE MIR 83 144 -118 3 1345 462 317 60 65 chr4 99718159 99718540 -55911580 - MLT1J2 LTR MaLR -8 440 17 3 1345 935 143 0 0 chr4 99718721 99718854 -55911266 - B1_Mur4 SINE Alu -17 133 1 3 1345 1006 112 12 0 chr4 99719305 99719474 -55910646 + (GA)n Simple_repeat Simple_repeat 1 171 0 3 1345 2305 113 3 21 chr4 99720172 99720505 -55909615 + ORR1A2 LTR MaLR 1 327 0 3 1345 700 276 20 25 chr4 99720701 99720902 -55909218 + B3 SINE B2 1 200 -16 3 1345 237 344 21 11 chr4 99723217 99723311 -55906809 + MIRb SINE MIR 141 235 -33 3 1345 204 159 2 79 chr4 99724029 99724086 -55906034 + MIR SINE MIR 119 173 -95 3 1345 195 298 106 0 chr4 99724152 99724246 -55905874 + MIR SINE MIR 127 230 -32 3 1345 290 353 160 0 chr4 99724653 99724803 -55905317 + B4A SINE B4 26 199 -93 3 1345 228 302 36 36 chr4 99725017 99725127 -55904993 - MIRb SINE MIR -50 218 109 3 1345 291 224 0 14 chr4 99725201 99725296 -55904824 - L1_Mur3 LINE L1 -2829 3317 3190 3 1345 618 113 0 0 chr4 99725312 99725409 -55904711 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 3 1345 937 0 9 9 chr4 99725409 99725523 -55904597 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 3 1345 361 260 52 0 chr4 99725658 99725754 -55904366 - RSINE1 SINE B4 -33 132 32 3 1345 23 33 0 0 chr4 99725840 99725870 -55904250 + AT_rich Low_complexity Low_complexity 1 30 0 3 1345 2138 284 78 19 chr4 99725878 99726744 -55903376 - L1_Rod LINE L1 -2827 3020 2116 3 1345 5906 28 0 0 chr4 99726916 99727589 -55902531 - L1Md_T LINE L1 -2 6580 5908 3 1345 372 44 0 0 chr4 99727589 99727634 -55902486 + L1Md_T LINE L1 5841 5885 -697 3 1345 309 302 19 0 chr4 99730349 99730455 -55899665 + Helitron3Na_Mam RC Helitron 25 132 -354 3 1345 260 374 82 3 chr4 99731943 99732116 -55898004 - MIR SINE MIR -70 198 8 3 1345 301 245 28 47 chr4 99732826 99732933 -55897187 + MLT1H LTR MaLR 106 210 -339 3 1345 1509 62 10 10 chr4 99732942 99733136 -55896984 - B2_Mm2 SINE B2 -1 194 1 3 1345 26 0 0 0 chr4 99733372 99733398 -55896722 + AT_rich Low_complexity Low_complexity 1 26 0 3 1345 272 300 57 88 chr4 99733476 99733637 -55896483 + MIRb SINE MIR 32 195 -73 3 1345 794 220 35 45 chr4 99734982 99735009 -55895111 - B3A SINE B2 0 198 177 3 1345 360 0 0 0 chr4 99735009 99735049 -55895071 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1345 794 220 35 45 chr4 99735049 99735221 -55894899 - B3A SINE B2 -22 176 1 3 1345 295 292 42 0 chr4 99735247 99735319 -55894801 - B1F1 SINE Alu -73 76 2 3 1345 280 267 0 151 chr4 99735319 99735373 -55894747 - B4A SINE B4 -206 86 51 3 1345 234 81 0 0 chr4 99735761 99735798 -55894322 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 1345 498 85 32 0 chr4 99735813 99735907 -55894213 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 3 1345 230 329 13 0 chr4 99735936 99736012 -55894108 - ID SINE ID -147 77 1 3 1345 230 188 20 40 chr4 99736727 99736777 -55893343 + ID_B1 SINE B4 89 137 -87 3 1345 509 296 19 19 chr4 99737481 99737643 -55892477 + MLT2B2 LTR ERVL 32 193 -322 3 1345 786 41 0 0 chr4 99737678 99737776 -55892344 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 1345 1446 144 13 9 chr4 99739185 99739409 -55890711 + URR1B DNA MER1_type 1 225 0 3 1345 346 273 45 90 chr4 99739541 99739588 -55890532 + RMER30 DNA MER1_type 34 80 -122 3 1345 230 56 0 27 chr4 99739588 99739625 -55890495 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1345 346 273 45 90 chr4 99739625 99739754 -55890366 + RMER30 DNA MER1_type 81 201 -1 3 1345 272 295 62 57 chr4 99739815 99739991 -55890129 + MLT1D LTR MaLR 98 274 -231 3 1345 237 213 173 18 chr4 99743121 99743231 -55886889 - Lx8 LINE L1 -28 7616 7490 3 1345 312 296 166 22 chr4 99743231 99743458 -55886662 - Lx8 LINE L1 -267 7377 7163 3 1345 342 259 12 0 chr4 99743572 99743653 -55886467 + RSINE1 SINE B4 3 84 -81 3 1345 685 169 66 51 chr4 99744147 99744284 -55885836 - B1_Mus2 SINE Alu -7 140 2 3 1345 6537 30 4 0 chr4 99744438 99745197 -55884923 - L1Md_F2 LINE L1 -12 6570 5809 3 1345 711 71 0 0 chr4 99745231 99745329 -55884791 + (TCC)n Simple_repeat Simple_repeat 2 99 0 3 1346 530 331 0 18 chr4 99745942 99746108 -55884012 - RSINE1 SINE B4 0 165 3 3 1346 536 311 59 8 chr4 99746122 99746340 -55883780 - L1ME1 LINE L1 -3 6176 5949 3 1346 183 100 0 0 chr4 99746340 99746370 -55883750 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1346 536 311 59 8 chr4 99746370 99746407 -55883713 - L1ME1 LINE L1 -231 5948 5909 3 1346 595 229 24 71 chr4 99746413 99746582 -55883538 - RSINE1 SINE B4 0 165 5 3 1346 603 236 151 6 chr4 99746668 99746847 -55883273 + ID_B1 SINE B4 1 205 -19 3 1346 345 47 0 0 chr4 99746851 99746894 -55883226 + (CAAT)n Simple_repeat Simple_repeat 4 46 0 3 1346 261 75 0 0 chr4 99747216 99747256 -55882864 + (CAAAC)n Simple_repeat Simple_repeat 1 40 0 3 1346 227 297 157 45 chr4 99747796 99748064 -55882056 - L1ME2 LINE L1 -5 6159 5862 3 1346 4320 208 76 11 chr4 99748085 99748199 -55881921 - Lx9 LINE L1 -3 7641 7479 3 1346 447 19 0 0 chr4 99748199 99748251 -55881869 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1346 4320 208 76 11 chr4 99748251 99749106 -55881014 - Lx9 LINE L1 -166 7478 6610 3 1346 787 301 108 43 chr4 99749203 99750043 -55880077 - L1ME1 LINE L1 -482 5698 4789 3 1346 474 289 169 27 chr4 99750338 99750625 -55879495 - L1ME1 LINE L1 -2663 3483 3166 3 1346 183 42 0 0 chr4 99750625 99750649 -55879471 + (TTA)n Simple_repeat Simple_repeat 1 24 0 3 1346 474 289 169 27 chr4 99750649 99750948 -55879172 - L1ME1 LINE L1 -2981 3165 2814 3 1346 415 294 29 22 chr4 99751011 99751150 -55878970 - B1F2 SINE Alu -9 140 1 3 1346 747 137 0 0 chr4 99751203 99751327 -55878793 + (TC)n Simple_repeat Simple_repeat 1 124 0 3 1346 900 168 7 0 chr4 99751350 99751493 -55878627 + B1_Mus1 SINE Alu 4 147 -1 3 1346 382 278 68 54 chr4 99751704 99751949 -55878171 - L1MA9 LINE L1 -1476 5997 5780 3 1346 203 188 0 20 chr4 99751949 99751998 -55878122 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1346 587 282 24 14 chr4 99752024 99752236 -55877884 - L1MA9 LINE L1 -498 5793 5580 3 1346 240 299 86 14 chr4 99752402 99752541 -55877579 - L1MD LINE L1 -3514 2632 2484 3 1346 14899 86 2 10 chr4 99752662 99754677 -55875443 - L1_Mus1 LINE L1 -97 5786 3790 3 1346 6506 46 1 1 chr4 99754677 99755455 -55874665 + L1_Mus1 LINE L1 5790 6567 0 3 1346 14899 86 2 10 chr4 99755455 99755466 -55874654 - L1_Mm LINE L1 -2094 3789 3776 3 1346 404 238 57 0 chr4 99755522 99755627 -55874493 - B1F SINE Alu -7 142 32 3 1346 22 35 0 0 chr4 99755654 99755683 -55874437 + AT_rich Low_complexity Low_complexity 1 29 0 3 1346 183 42 0 0 chr4 99755924 99755948 -55874172 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1346 758 128 88 29 chr4 99755948 99756085 -55874035 - B1_Mus2 SINE Alu 0 147 3 3 1346 185 0 0 39 chr4 99756085 99756111 -55874009 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3 1346 243 0 0 0 chr4 99756402 99756429 -55873691 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1346 192 40 0 0 chr4 99756429 99756453 -55873667 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1346 352 381 43 12 chr4 99756604 99756859 -55873261 - HERV16-int LTR ERVL -3449 1547 1285 3 1346 302 305 81 0 chr4 99756896 99757093 -55873027 - HAL1 LINE L1 -127 2380 2168 3 1346 237 179 150 25 chr4 99757345 99757425 -55872695 - HAL1 LINE L1 -671 1836 1747 3 1346 544 199 35 49 chr4 99757508 99757651 -55872469 + Lx9 LINE L1 7502 7642 -2 3 1346 180 0 0 0 chr4 99757673 99757693 -55872427 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 3 1346 1091 115 11 0 chr4 99757693 99757866 -55872254 + (GGAGA)n Simple_repeat Simple_repeat 5 180 0 3 1346 269 66 0 0 chr4 99757940 99757995 -55872125 + L1_Mus2 LINE L1 6525 6582 0 3 1346 244 351 96 13 chr4 99758297 99758453 -55871667 + LTR41B LTR ERVL 1 169 -589 3 1346 1181 173 32 12 chr4 99758571 99758817 -55871303 + MTC LTR MaLR 1 251 -170 3 1346 693 50 0 0 chr4 99758817 99758897 -55871223 + L1Md_F2 LINE L1 5507 5586 -297 3 1346 8307 48 0 4 chr4 99758897 99759927 -55870193 + L1Md_F2 LINE L1 5587 6582 0 3 1346 475 184 138 0 chr4 99759927 99760036 -55870084 + MTC LTR MaLR 196 319 -102 3 1346 1966 138 17 22 chr4 99760043 99760399 -55869721 - ORR1B1 LTR MaLR 0 394 41 3 1346 423 160 1 55 chr4 99760406 99760507 -55869613 + MTC LTR MaLR 321 419 -2 3 1346 253 266 199 78 chr4 99760634 99760915 -55869205 + LTR41B LTR ERVL 399 713 -45 3 1346 1729 273 95 32 chr4 99760939 99761805 -55868315 - L1ME1 LINE L1 -72 6107 5180 3 1346 779 203 47 52 chr4 99761826 99762018 -55868102 - B3A SINE B2 -7 191 1 3 1346 564 296 22 122 chr4 99762291 99762603 -55867517 - B4A SINE B4 -8 284 4 3 1346 420 297 6 72 chr4 99762811 99762832 -55867288 + ID_B1 SINE B4 66 219 -3 3 1346 604 261 7 14 chr4 99762832 99762976 -55867144 + B1_Mur1 SINE Alu 2 144 -5 3 1346 27 29 0 0 chr4 99762978 99763012 -55867108 + AT_rich Low_complexity Low_complexity 1 34 0 3 1346 1063 85 14 0 chr4 99763100 99763241 -55866879 - B1_Mus1 SINE Alu -5 143 1 3 1346 193 360 165 0 chr4 99763288 99763452 -55866668 - MIRb SINE MIR -26 242 52 3 1346 261 0 0 0 chr4 99763796 99763825 -55866295 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1346 5102 62 26 3 chr4 99763825 99764484 -55865636 - L1_Mus4 LINE L1 -12 6624 5951 3 1346 5970 97 10 0 chr4 99764484 99765437 -55864683 + L1_Mus4 LINE L1 4984 5946 -690 3 1346 486 0 0 0 chr4 99765578 99765632 -55864488 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1346 217 318 48 90 chr4 99765669 99765835 -55864285 + MIR3 SINE MIR 49 207 -1 3 1346 30 27 0 0 chr4 99766827 99766864 -55863256 + AT_rich Low_complexity Low_complexity 1 37 0 3 1346 3546 116 28 4 chr4 99766864 99767402 -55862718 - Lx4A LINE L1 -6 7052 6502 3 1346 192 184 0 0 chr4 99768231 99768280 -55861840 + G-rich Low_complexity Low_complexity 1 49 0 3 1346 23 33 0 0 chr4 99768828 99768858 -55861262 + GC_rich Low_complexity Low_complexity 1 30 0 3 1346 243 88 0 0 chr4 99769152 99769186 -55860934 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1346 360 0 0 0 chr4 99769520 99769560 -55860560 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1346 27 49 0 0 chr4 99770793 99770834 -55859286 + AT_rich Low_complexity Low_complexity 1 41 0 3 1346 457 266 8 38 chr4 99771470 99771603 -55858517 - B4A SINE B4 -2 290 162 4 1346 2026 151 162 50 chr4 99772501 99772920 -55857200 + RMER4A LTR ERVK 1 466 0 4 1346 1246 48 0 0 chr4 99773226 99773373 -55856747 + B1_Mm SINE Alu 1 147 0 4 1346 434 325 122 77 chr4 99775080 99775407 -55854713 - ORR1E LTR MaLR 0 359 18 4 1346 274 191 29 87 chr4 99775407 99775510 -55854610 + MIRb SINE MIR 99 195 -73 4 1346 219 300 43 32 chr4 99776191 99776284 -55853836 - MIRb SINE MIR -122 146 53 4 1346 226 327 78 10 chr4 99776973 99777075 -55853045 + MLT1J2 LTR MaLR 74 182 -266 4 1346 262 287 139 0 chr4 99778296 99778425 -55851695 - MIR SINE MIR -109 153 7 4 1346 204 179 0 49 chr4 99780892 99780933 -55849187 - L2b LINE L2 -13 3362 3324 4 1346 505 266 8 24 chr4 99781008 99781135 -55848985 - RSINE1 SINE B4 -35 130 6 4 1346 1152 184 9 28 chr4 99782092 99782305 -55847815 + B3 SINE B2 3 211 -5 4 1346 236 178 0 0 chr4 99782320 99782365 -55847755 - MIR SINE MIR -98 164 120 4 1346 1102 72 0 43 chr4 99784025 99784213 -55845907 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 4 1346 249 33 0 0 chr4 99784241 99784271 -55845849 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 4 1346 247 362 28 21 chr4 99785276 99785439 -55844681 + MIRm SINE MIR 2 161 -47 4 1346 823 177 21 0 chr4 99785913 99786054 -55844066 - B1_Mur2 SINE Alu -5 144 1 4 1346 529 259 137 0 chr4 99786090 99786229 -55843891 - RSINE1 SINE B4 -4 161 4 4 1346 192 350 37 37 chr4 99786582 99786689 -55843431 + L2b LINE L2 3269 3375 0 4 1346 405 0 0 0 chr4 99787753 99787798 -55842322 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1346 491 293 61 30 chr4 99787803 99788000 -55842120 - B3A SINE B2 -13 203 1 4 1346 1888 47 35 0 chr4 99788110 99788365 -55841755 + MusHAL1 LINE L1 1823 2086 -626 4 1346 23 33 0 0 chr4 99788926 99788956 -55841164 + AT_rich Low_complexity Low_complexity 1 30 0 4 1346 333 118 0 0 chr4 99789001 99789052 -55841068 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1346 911 197 104 0 chr4 99789147 99789340 -55840780 - B3 SINE B2 0 216 4 4 1346 401 54 18 0 chr4 99789354 99789410 -55840710 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1346 347 217 43 11 chr4 99789412 99789505 -55840615 - RSINE1 SINE B4 -59 106 11 4 1346 598 289 140 4 chr4 99789625 99789868 -55840252 - Tigger7 DNA MER2_type -2183 308 33 4 1346 27 62 0 0 chr4 99789911 99789959 -55840161 + AT_rich Low_complexity Low_complexity 1 48 0 4 1346 431 209 133 0 chr4 99790322 99790427 -55839693 + RSINE1 SINE B4 16 134 -31 4 1346 685 277 204 27 chr4 99790492 99790934 -55839186 + L1MD2 LINE L1 5622 6141 -218 4 1346 767 108 8 0 chr4 99791763 99791883 -55838237 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 4 1346 419 274 39 0 chr4 99791885 99791987 -55838133 - PB1D7 SINE Alu -14 106 1 4 1346 1451 113 223 0 chr4 99792047 99792312 -55837808 + ORR1A2 LTR MaLR 1 324 -3 4 1346 213 155 52 0 chr4 99792650 99792708 -55837412 + GA-rich Low_complexity Low_complexity 1 61 0 4 1346 210 255 0 21 chr4 99792910 99792958 -55837162 + polypyrimidine Low_complexity Low_complexity 1 47 0 4 1346 186 254 44 15 chr4 99794206 99794274 -55835846 - L3 LINE CR1 -3530 959 890 4 1346 1171 171 5 9 chr4 99795653 99795866 -55834254 + URR1A DNA MER1_type 15 226 0 4 1346 879 10 0 0 chr4 99795959 99796059 -55834061 + (GAA)n Simple_repeat Simple_repeat 2 101 0 4 1346 385 292 166 7 chr4 99797138 99797283 -55832837 - B3A SINE B2 -30 168 1 4 1346 435 348 19 0 chr4 99797283 99797444 -55832676 + MER58B DNA MER1_type 175 338 -3 4 1346 997 211 72 0 chr4 99797575 99797783 -55832337 - ID_B1 SINE B4 0 224 2 4 1346 249 212 0 43 chr4 99797785 99797854 -55832266 + (CCCCAG)n Simple_repeat Simple_repeat 5 70 0 4 1346 432 311 39 13 chr4 99797974 99798127 -55831993 - MIRb SINE MIR -32 236 80 4 1346 264 200 0 0 chr4 99798302 99798372 -55831748 + CT-rich Low_complexity Low_complexity 1 70 0 4 1346 225 0 0 0 chr4 99798372 99798397 -55831723 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1346 385 253 0 0 chr4 99798409 99798492 -55831628 - RSINE1 SINE B4 -40 125 43 4 1346 1807 211 35 8 chr4 99798592 99798994 -55831126 + MTC LTR MaLR 1 413 -8 4 1346 1170 139 31 26 chr4 99800056 99800248 -55829872 - B2_Mm2 SINE B2 0 195 3 4 1346 215 235 20 0 chr4 99801423 99801474 -55828646 - MIRb SINE MIR -7 261 210 4 1346 730 239 114 44 chr4 99803450 99803721 -55826399 - B4 SINE B4 0 292 3 4 1346 219 260 183 0 chr4 99803934 99804038 -55826082 + MIR SINE MIR 67 189 -73 4 1346 608 279 104 17 chr4 99806113 99806343 -55823777 + B4A SINE B4 1 250 -42 4 1346 338 196 0 9 chr4 99806432 99806545 -55823575 + (CA)n Simple_repeat Simple_repeat 2 113 0 4 1346 524 195 11 11 chr4 99806555 99806731 -55823389 + GA-rich Low_complexity Low_complexity 2 177 0 4 1346 291 54 0 0 chr4 99807368 99807405 -55822715 + (TATG)n Simple_repeat Simple_repeat 1 37 0 4 1346 320 316 32 32 chr4 99807494 99807648 -55822472 + L1M4 LINE L1 5418 5571 -603 4 1346 21 0 0 0 chr4 99808404 99808425 -55821695 + AT_rich Low_complexity Low_complexity 1 21 0 4 1346 380 235 62 50 chr4 99808433 99808594 -55821526 - Lx8 LINE L1 -8 7465 7303 4 1346 234 61 0 29 chr4 99808572 99808606 -55821514 - RMER1C Other Other -146 1196 1164 4 1346 501 245 1 26 chr4 99808994 99809115 -55821005 - PB1D7 SINE Alu 0 120 4 4 1346 212 329 97 32 chr4 99810861 99811015 -55819105 + L2a LINE L2 2965 3128 -298 4 1346 28 0 0 0 chr4 99812372 99812400 -55817720 + AT_rich Low_complexity Low_complexity 1 28 0 4 1346 679 293 130 11 chr4 99812524 99812900 -55817220 + Tigger9b DNA MER2_type 203 623 -1 4 1346 243 0 0 0 chr4 99814701 99814728 -55815392 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4 1346 264 294 30 1 chr4 99815595 99815672 -55814448 - MIRc SINE MIR -167 101 19 4 1346 1217 94 28 0 chr4 99815758 99815939 -55814181 - URR1B DNA MER1_type 0 225 40 4 1346 1445 68 0 45 chr4 99816372 99816573 -55813547 - B2_Mm1a SINE B2 0 193 2 4 1346 234 0 0 0 chr4 99817655 99817681 -55812439 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1346 246 205 0 37 chr4 99818021 99818102 -55812018 + CT-rich Low_complexity Low_complexity 2 79 0 4 1346 616 102 0 0 chr4 99818325 99818413 -55811707 - B2_Mm2 SINE B2 -99 96 9 4 1346 379 324 27 9 chr4 99818572 99818684 -55811436 + B3 SINE B2 78 191 -25 4 1346 842 276 94 32 chr4 99818834 99819175 -55810945 + Lx7 LINE L1 7118 7479 -217 4 1346 987 86 0 0 chr4 99819179 99819318 -55810802 + (GA)n Simple_repeat Simple_repeat 1 139 0 4 1346 231 173 66 13 chr4 99819342 99819418 -55810702 + Lx7 LINE L1 7617 7696 0 4 1346 237 287 74 40 chr4 99819523 99819672 -55810448 + YREP_Mm Unknown Unknown 143 296 -1516 4 1346 613 288 0 0 chr4 99819555 99819687 -55810433 - ID_B1 SINE B4 -6 218 87 4 1346 266 250 14 14 chr4 99819902 99819971 -55810149 - ID4_ SINE ID -11 72 4 4 1346 4459 237 132 23 chr4 99820760 99820863 -55809257 - Lx9 LINE L1 -15 7629 7524 4 1346 303 130 0 0 chr4 99820863 99820917 -55809203 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1346 4459 237 132 23 chr4 99820917 99822131 -55807989 - Lx9 LINE L1 -121 7523 6169 4 1346 578 267 30 0 chr4 99822313 99822444 -55807676 - B1_Mur1 SINE Alu -5 144 10 4 1346 192 186 47 0 chr4 99823230 99823273 -55806847 + L2 LINE L2 2295 2339 -1080 4 1346 513 131 0 0 chr4 99824277 99824361 -55805759 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1346 323 257 15 112 chr4 99824629 99824785 -55805335 + B1F2 SINE Alu 3 136 -13 4 1346 261 0 0 0 chr4 99824785 99824814 -55805306 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1346 290 240 0 51 chr4 99824814 99824827 -55805293 + B1_Mus2 SINE Alu 135 146 -1 4 1346 220 257 14 14 chr4 99824968 99825039 -55805081 + MIRb SINE MIR 118 188 -80 4 1346 195 42 0 0 chr4 99825899 99825923 -55804197 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1346 1139 117 0 6 chr4 99825923 99826103 -55804017 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1346 527 114 0 22 chr4 99826109 99826199 -55803921 + (GGGA)n Simple_repeat Simple_repeat 3 90 0 4 1346 28 29 0 0 chr4 99829624 99829659 -55800461 + AT_rich Low_complexity Low_complexity 1 35 0 4 1346 218 196 0 0 chr4 99831769 99831820 -55798300 + T-rich Low_complexity Low_complexity 1 51 0 4 1346 342 0 0 0 chr4 99832237 99832275 -55797845 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1346 468 51 0 0 chr4 99832275 99832333 -55797787 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1346 186 43 0 0 chr4 99832708 99832731 -55797389 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1346 260 287 13 14 chr4 99832922 99833025 -55797095 + MIR3 SINE MIR 110 208 0 4 1346 316 320 59 39 chr4 99833649 99833802 -55796318 - RMER15 LTR ERVL -73 502 347 4 1346 236 290 165 33 chr4 99834522 99834921 -55795199 - L1MEc LINE L1 -5249 1151 700 4 1346 312 274 99 39 chr4 99834935 99835117 -55795003 - L1MEc LINE L1 -6055 345 153 4 1346 184 268 80 0 chr4 99835318 99835425 -55794695 + L2a LINE L2 3266 3426 0 4 1346 180 0 0 0 chr4 99835531 99835551 -55794569 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1346 206 212 19 8 chr4 99837689 99837756 -55792364 - MIR SINE MIR -106 162 90 4 1346 189 0 0 0 chr4 99838560 99838581 -55791539 + (CAG)n Simple_repeat Simple_repeat 3 23 0 4 1346 291 212 0 0 chr4 99838944 99839029 -55791091 + C-rich Low_complexity Low_complexity 1 85 0 5 1346 621 240 7 40 chr4 99840231 99840383 -55789737 - B3A SINE B2 -51 147 1 5 1346 251 177 0 16 chr4 99840636 99840699 -55789421 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1346 425 19 19 0 chr4 99840748 99840802 -55789318 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1346 408 67 0 0 chr4 99840802 99840862 -55789258 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1346 306 125 0 0 chr4 99841646 99841694 -55788426 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1346 360 0 0 0 chr4 99841885 99841925 -55788195 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1346 311 291 0 0 chr4 99841928 99842007 -55788113 - ID4_ SINE ID -4 79 1 5 1346 351 318 60 30 chr4 99842072 99842273 -55787847 + MIRb SINE MIR 50 256 -12 5 1346 204 40 0 0 chr4 99843312 99843337 -55786783 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1346 432 0 0 0 chr4 99843789 99843837 -55786283 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1346 218 377 0 17 chr4 99844827 99844943 -55785177 + MIRb SINE MIR 14 127 -141 5 1346 1402 210 43 83 chr4 99845034 99845455 -55784665 + Lx7 LINE L1 7089 7492 -204 5 1346 503 264 80 19 chr4 99847780 99847942 -55782178 + MIRb SINE MIR 83 254 -14 5 1346 546 43 0 0 chr4 99849914 99849983 -55780137 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1346 740 288 45 28 chr4 99850015 99850301 -55779819 - B4 SINE B4 0 292 2 5 1346 519 291 87 16 chr4 99850760 99850945 -55779175 + B3A SINE B2 1 198 0 5 1346 244 346 79 12 chr4 99852226 99852390 -55777730 + MIR SINE MIR 69 243 -19 5 1346 212 0 36 0 chr4 99852412 99852440 -55777680 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1346 906 36 0 0 chr4 99853615 99853725 -55776395 + (TTCTC)n Simple_repeat Simple_repeat 1 110 0 5 1346 1377 61 0 0 chr4 99853725 99853905 -55776215 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 5 1346 274 183 0 27 chr4 99853908 99853981 -55776139 + CT-rich Low_complexity Low_complexity 4 74 0 5 1346 764 219 0 7 chr4 99854001 99854148 -55775972 - B1_Mus1 SINE Alu 0 148 3 5 1346 368 291 9 26 chr4 99855721 99855834 -55774286 + B4A SINE B4 169 279 -13 5 1346 249 276 0 0 chr4 99856334 99856392 -55773728 - ID4 SINE ID 0 83 26 5 1346 477 0 0 0 chr4 99856609 99856662 -55773458 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1346 558 260 0 30 chr4 99857263 99857394 -55772726 + ID_B1 SINE B4 84 210 -14 5 1346 433 298 34 75 chr4 99857598 99857830 -55772290 - MTEa LTR MaLR -9 370 124 5 1346 453 347 60 4 chr4 99858256 99858505 -55771615 - ALINE LINE RTE -278 339 77 5 1346 224 30 30 0 chr4 99859860 99859893 -55770227 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1346 219 69 0 0 chr4 99860090 99860119 -55770001 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1346 630 0 0 0 chr4 99860544 99860614 -55769506 + (CTG)n Simple_repeat Simple_repeat 3 72 0 5 1346 259 340 59 10 chr4 99861445 99861546 -55768574 - MIR3 SINE MIR -53 155 50 5 1346 24 0 0 0 chr4 99862600 99862624 -55767496 + AT_rich Low_complexity Low_complexity 1 24 0 5 1346 21 71 0 0 chr4 99862851 99862893 -55767227 + AT_rich Low_complexity Low_complexity 1 42 0 5 1346 349 309 129 10 chr4 99863029 99863222 -55766898 - MLT1F1 LTR MaLR 0 569 354 5 1346 247 308 182 15 chr4 99863253 99863451 -55766669 - MLT1F1 LTR MaLR -278 282 52 5 1346 202 306 61 10 chr4 99863508 99863607 -55766513 - MIRb SINE MIR -143 125 22 5 1346 1067 171 28 14 chr4 99863849 99864062 -55766058 + URR1A DNA MER1_type 1 216 -10 5 1346 24 0 0 0 chr4 99865167 99865191 -55764929 + AT_rich Low_complexity Low_complexity 1 24 0 5 1346 1854 74 4 29 chr4 99865834 99866111 -55764009 - L1Md_F3 LINE L1 -1 6583 6314 5 1346 560 151 7 118 chr4 99867247 99867334 -55762786 - RMER4A LTR ERVK 0 466 386 5 1346 882 125 0 0 chr4 99867334 99867510 -55762610 + (GA)n Simple_repeat Simple_repeat 1 176 0 5 1346 560 151 7 118 chr4 99867510 99867557 -55762563 - RMER4A LTR ERVK -81 385 347 5 1346 959 157 11 0 chr4 99867558 99867736 -55762384 + GA-rich Low_complexity Low_complexity 1 180 0 5 1346 840 236 0 42 chr4 99867737 99867949 -55762171 - RMER4A LTR ERVK -80 386 184 5 1346 357 82 0 0 chr4 99868001 99868050 -55762070 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1346 207 189 0 0 chr4 99868766 99868819 -55761301 + (ATG)n Simple_repeat Simple_repeat 3 55 0 5 1346 326 246 109 0 chr4 99869808 99869918 -55760202 + L2a LINE L2 3300 3421 -5 5 1346 420 71 0 0 chr4 99871619 99871675 -55758445 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 5 1346 267 250 46 37 chr4 99871769 99871877 -55758243 - MIR SINE MIR -2 260 152 5 1346 1086 238 100 24 chr4 99872480 99872820 -55757300 - ORR1D2 LTR MaLR -4 366 1 5 1346 228 35 0 0 chr4 99872883 99872912 -55757208 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1346 219 69 0 0 chr4 99872912 99872940 -55757180 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 5 1346 186 133 0 0 chr4 99873957 99873987 -55756133 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1346 297 0 0 0 chr4 99873987 99874020 -55756100 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1346 1066 124 149 5 chr4 99875160 99875355 -55754765 + URR1A DNA MER1_type 1 223 -3 5 1346 508 111 0 22 chr4 99876697 99876789 -55753331 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 5 1347 1054 81 0 28 chr4 99877535 99877712 -55752408 + (TTC)n Simple_repeat Simple_repeat 3 174 0 5 1347 713 148 8 0 chr4 99877716 99877844 -55752276 + CT-rich Low_complexity Low_complexity 3 131 0 5 1347 351 283 8 81 chr4 99877877 99878000 -55752120 - PB1 SINE Alu -13 114 1 5 1347 2212 230 76 30 chr4 99878485 99879170 -55750950 - Lx5 LINE L1 0 7460 6419 5 1347 515 161 53 11 chr4 99879163 99879257 -55750863 + Lx5 LINE L1 6271 6368 -682 5 1347 194 0 39 0 chr4 99879676 99879702 -55750418 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1347 556 259 33 56 chr4 99880106 99880286 -55749834 - B3 SINE B2 0 216 41 5 1347 226 0 29 29 chr4 99880296 99880331 -55749789 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1347 250 239 0 0 chr4 99880402 99880448 -55749672 - B2_Mm2 SINE B2 -149 46 1 5 1347 230 53 52 35 chr4 99881121 99881179 -55748941 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1347 241 269 43 77 chr4 99882108 99882225 -55747895 + PB1D10 SINE Alu 5 117 0 5 1347 1034 149 6 11 chr4 99882301 99882477 -55747643 + URR1A DNA MER1_type 52 226 0 5 1347 336 206 8 16 chr4 99883072 99883200 -55746920 + GA-rich Low_complexity Low_complexity 2 128 0 5 1347 512 217 0 7 chr4 99883218 99883362 -55746758 + GA-rich Low_complexity Low_complexity 3 145 0 5 1347 247 317 9 38 chr4 99883914 99884019 -55746101 - MIRb SINE MIR -127 141 40 5 1347 1054 68 0 29 chr4 99885021 99885158 -55744962 - B1_Mus1 SINE Alu -13 135 3 5 1347 309 82 0 0 chr4 99885173 99885222 -55744898 + (TTGG)n Simple_repeat Simple_repeat 4 52 0 5 1347 978 150 130 0 chr4 99885681 99885881 -55744239 - URR1A DNA MER1_type 0 226 1 5 1347 1806 50 0 22 chr4 99886206 99886431 -55743689 + L1_Mus1 LINE L1 6348 6567 0 5 1347 230 250 62 0 chr4 99887331 99887395 -55742725 - MIRb SINE MIR -188 80 13 5 1347 210 188 19 23 chr4 99889852 99889917 -55740203 - L2a LINE L2 -1 3425 3311 5 1347 262 224 0 0 chr4 99890122 99890180 -55739940 - MER5A DNA MER1_type -99 90 33 5 1347 1308 214 76 23 chr4 99892965 99893319 -55736801 - ORR1D1 LTR MaLR 0 374 2 5 1347 207 0 0 0 chr4 99893851 99893874 -55736246 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1347 366 314 87 25 chr4 99895517 99895713 -55734407 - LTR48B LTR ERV1 0 644 437 5 1347 347 270 41 41 chr4 99895795 99895929 -55734191 - LTR48B LTR ERV1 -646 141 1 5 1347 185 290 29 0 chr4 99896620 99896689 -55733431 + L2c LINE L2 3094 3164 -223 5 1347 656 314 64 21 chr4 99897683 99897917 -55732203 - B4A SINE B4 0 292 49 5 1347 371 300 20 125 chr4 99897927 99898232 -55731888 - LTR82B Low_complexity ERVL -550 280 8 5 1347 3187 237 32 44 chr4 99898259 99899186 -55730934 - RCHARR1 DNA MER1_type -3 971 56 5 1347 285 29 0 0 chr4 99900300 99900334 -55729786 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1347 287 260 38 25 chr4 99900598 99900677 -55729443 + ID4_ SINE ID 3 82 -1 5 1347 224 348 149 5 chr4 99900710 99900898 -55729222 - MIRb SINE MIR -23 245 31 5 1347 622 255 71 57 chr4 99904033 99904245 -55725875 + B3A SINE B2 2 216 0 5 1347 31 0 0 0 chr4 99904506 99904537 -55725583 + AT_rich Low_complexity Low_complexity 1 31 0 5 1347 191 215 15 0 chr4 99905496 99905561 -55724559 + GA-rich Low_complexity Low_complexity 1 66 0 5 1347 708 54 0 0 chr4 99905565 99905658 -55724462 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 5 1347 2290 264 51 25 chr4 99905766 99906573 -55723547 - RCHARR1 DNA MER1_type 0 974 147 5 1347 305 348 43 0 chr4 99906786 99906924 -55723196 + MER5B DNA MER1_type 17 160 -18 5 1347 380 213 21 21 chr4 99907324 99907420 -55722700 + MLT1A1 LTR MaLR 313 408 0 5 1347 371 267 169 11 chr4 99908030 99908219 -55721901 + L1MC4 LINE L1 6791 7009 -1033 5 1347 611 103 10 0 chr4 99908264 99908361 -55721759 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 5 1347 525 58 0 0 chr4 99908441 99908510 -55721610 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 5 1347 419 63 16 0 chr4 99908588 99908651 -55721469 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 5 1347 1126 286 122 48 chr4 99908828 99909530 -55720590 + L1MC4 LINE L1 7205 7958 -84 5 1347 611 278 10 86 chr4 99910020 99910171 -55719949 - B3A SINE B2 -5 193 56 5 1347 1060 178 119 0 chr4 99910171 99910373 -55719747 + URR1A DNA MER1_type 1 226 0 5 1347 611 278 10 86 chr4 99910373 99910430 -55719690 - B3A SINE B2 -143 55 1 5 1347 504 282 78 11 chr4 99910561 99910836 -55719284 - MER2 DNA MER2_type -20 325 2 5 1347 720 229 120 0 chr4 99911294 99911486 -55718634 - B3 SINE B2 0 216 2 5 1347 643 164 0 0 chr4 99911670 99911774 -55718346 + RMER1A Other Other 415 518 -512 6 1347 202 95 48 0 chr4 99911822 99911864 -55718256 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1347 782 88 0 14 chr4 99911869 99912008 -55718112 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 6 1347 2953 157 36 0 chr4 99912023 99912500 -55717620 + RMER1A Other Other 535 1028 -2 6 1347 735 179 0 0 chr4 99912501 99912641 -55717479 + GA-rich Low_complexity Low_complexity 3 142 0 6 1347 226 323 44 40 chr4 99914217 99914408 -55715712 + MIRb SINE MIR 6 191 -77 6 1347 3018 42 3 0 chr4 99915325 99915686 -55714434 + L1_Mus1 LINE L1 6205 6566 -1 6 1347 361 266 0 13 chr4 99916180 99916294 -55713826 - L1MA8 LINE L1 -4 6308 6195 6 1347 243 0 0 0 chr4 99916513 99916540 -55713580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1347 1122 73 0 0 chr4 99916540 99916677 -55713443 - B1_Mus2 SINE Alu -10 137 1 6 1347 356 306 33 26 chr4 99917786 99917937 -55712183 - MIRb SINE MIR -32 236 85 6 1347 330 275 19 72 chr4 99917959 99918167 -55711953 + Charlie7a DNA MER1_type 43 239 -33 6 1347 1104 90 7 0 chr4 99918187 99918332 -55711788 + B1_Mus2 SINE Alu 2 147 0 6 1347 204 269 19 0 chr4 99918456 99918508 -55711612 + L2a LINE L2 3309 3361 -65 6 1347 545 293 154 4 chr4 99918604 99918851 -55711269 + MLT1A0 LTR MaLR 46 329 -36 6 1347 1092 74 6 28 chr4 99919208 99919388 -55710732 + Lx LINE L1 6478 6653 -1 6 1347 198 0 0 0 chr4 99919393 99919415 -55710705 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1347 385 236 113 13 chr4 99920715 99920865 -55709255 - L2a LINE L2 -35 3391 3227 6 1347 281 172 0 15 chr4 99920962 99921027 -55709093 + GA-rich Low_complexity Low_complexity 2 65 0 6 1347 216 0 0 0 chr4 99921433 99921457 -55708663 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 6 1347 282 206 0 0 chr4 99922240 99922303 -55707817 + (CCCA)n Simple_repeat Simple_repeat 3 65 0 6 1347 1060 81 29 0 chr4 99922303 99922477 -55707643 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 6 1347 248 200 17 52 chr4 99923519 99923577 -55706543 - MLT1J LTR MaLR -343 169 114 6 1347 816 232 124 31 chr4 99923663 99923921 -55706199 + B4 SINE B4 10 291 -1 6 1347 195 129 0 0 chr4 99924415 99924446 -55705674 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 1347 377 163 11 0 chr4 99925126 99925218 -55704902 + GA-rich Low_complexity Low_complexity 1 93 0 6 1347 267 345 98 69 chr4 99927248 99927594 -55702526 - MLT1J LTR MaLR -38 474 119 6 1347 857 241 28 79 chr4 99929170 99929559 -55700561 - RLTR11B LTR ERVK -60 381 1 6 1347 212 250 0 18 chr4 99929589 99929646 -55700474 + CT-rich Low_complexity Low_complexity 1 56 0 6 1347 219 167 0 0 chr4 99930341 99930383 -55699737 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1347 472 315 53 26 chr4 99930433 99930661 -55699459 + MER2 DNA MER2_type 81 314 -31 6 1347 278 330 50 34 chr4 99930709 99930828 -55699292 + B1F SINE Alu 26 146 -3 6 1347 230 0 33 0 chr4 99931475 99931505 -55698615 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1347 231 103 0 0 chr4 99931876 99931915 -55698205 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1347 248 256 146 0 chr4 99932230 99932312 -55697808 + MIRb SINE MIR 35 128 -140 6 1347 242 106 0 21 chr4 99932970 99933018 -55697102 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1347 1529 210 38 48 chr4 99934004 99934399 -55695721 - MTD LTR MaLR -16 403 13 6 1347 473 221 9 42 chr4 99934779 99934888 -55695232 - PB1D10 SINE Alu -9 111 1 6 1347 305 281 14 56 chr4 99935575 99935718 -55694402 + L2a LINE L2 2365 2501 -918 6 1347 664 294 79 68 chr4 99936285 99936701 -55693419 + MTD LTR MaLR 1 404 -15 6 1347 209 274 172 26 chr4 99936767 99936883 -55693237 + L2a LINE L2 3292 3424 -2 6 1347 360 64 0 0 chr4 99936943 99936990 -55693130 + (CTA)n Simple_repeat Simple_repeat 1 47 0 6 1347 32817 82 10 27 chr4 99937210 99942652 -55687468 + L1Md_F2 LINE L1 244 5586 -297 6 1347 7794 68 0 3 chr4 99942652 99943639 -55686481 + L1Md_F2 LINE L1 5587 6570 -12 6 1347 193 357 36 0 chr4 99944022 99944106 -55686014 + MIR SINE MIR 8 94 -168 6 1347 337 315 7 44 chr4 99944941 99945077 -55685043 - MIRb SINE MIR -48 220 90 6 1347 572 243 73 23 chr4 99945120 99945297 -55684823 + B3 SINE B2 1 186 -30 6 1347 432 0 0 0 chr4 99945297 99945345 -55684775 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1347 216 0 0 0 chr4 99945794 99945818 -55684302 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1347 1101 246 81 31 chr4 99947420 99947777 -55682343 - Lx9 LINE L1 0 7644 7270 6 1347 21 36 0 0 chr4 99947966 99947994 -55682126 + AT_rich Low_complexity Low_complexity 1 28 0 6 1347 197 333 24 0 chr4 99948212 99948296 -55681824 + MIRb SINE MIR 80 165 -103 6 1347 233 194 40 20 chr4 99950024 99950124 -55679996 + GA-rich Low_complexity Low_complexity 4 105 0 6 1347 314 337 25 36 chr4 99950350 99950550 -55679570 + MTEb LTR MaLR 160 366 -13 6 1347 211 241 51 17 chr4 99951358 99951417 -55678703 - MIR3 SINE MIR -36 172 112 6 1347 403 276 79 0 chr4 99951610 99951737 -55678383 - MER110A LTR ERV1 -327 141 5 6 1347 654 285 117 35 chr4 99952093 99952145 -55677975 - MLT2C1 LTR ERVL 0 397 339 6 1347 444 19 0 0 chr4 99952145 99952198 -55677922 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1347 654 285 117 35 chr4 99952198 99952512 -55677608 - MLT2C1 LTR ERVL -59 338 1 6 1347 232 333 36 27 chr4 99952889 99953000 -55677120 - LTR33 LTR ERVL -357 158 47 6 1347 239 186 0 23 chr4 99953290 99953378 -55676742 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 6 1347 265 314 6 34 chr4 99954723 99954851 -55675269 - ORR1C1 LTR MaLR -236 138 13 6 1347 26 74 0 0 chr4 99955492 99955546 -55674574 + AT_rich Low_complexity Low_complexity 1 54 0 6 1347 408 318 74 19 chr4 99955606 99955821 -55674299 - MIRb SINE MIR -35 233 7 6 1347 392 302 0 23 chr4 99955820 99955949 -55674171 + MIRc SINE MIR 137 262 -6 6 1347 26 0 0 0 chr4 99956397 99956423 -55673697 + AT_rich Low_complexity Low_complexity 1 26 0 6 1347 212 296 14 40 chr4 99956424 99956498 -55673622 + MIRc SINE MIR 96 167 -101 6 1347 415 265 88 0 chr4 99956710 99956857 -55673263 - RMER15 LTR ERVL 0 575 416 6 1347 331 21 42 0 chr4 99959311 99959359 -55670761 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1347 249 196 0 0 chr4 99960846 99960902 -55669218 + (TAA)n Simple_repeat Simple_repeat 2 57 0 6 1347 481 262 70 21 chr4 99961247 99961434 -55668686 - L1MB1 LINE L1 -22 6161 5966 6 1347 405 232 17 188 chr4 99961754 99961993 -55668127 - B3A SINE B2 0 198 1 6 1347 565 302 57 68 chr4 99962028 99962468 -55667652 - L1MB1 LINE L1 -235 5933 5499 6 1347 201 303 13 26 chr4 99962534 99962612 -55667508 + MIRb SINE MIR 54 130 -138 6 1347 530 219 7 96 chr4 99962850 99962986 -55667134 + RSINE1 SINE B4 2 125 -40 6 1347 198 71 0 0 chr4 99963043 99963071 -55667049 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 1347 633 288 58 16 chr4 99963254 99963468 -55666652 - ID_B1 SINE B4 -5 219 5 6 1347 585 368 60 0 chr4 99964994 99965260 -55664860 - Tigger7 DNA MER2_type -2187 304 23 6 1347 465 281 22 22 chr4 99967191 99967329 -55662791 - B3 SINE B2 -20 196 59 6 1347 23 0 0 0 chr4 99967375 99967398 -55662722 + AT_rich Low_complexity Low_complexity 1 23 0 6 1347 375 297 92 71 chr4 99969229 99969512 -55660608 + ORR1E LTR MaLR 3 291 -68 6 1347 351 0 0 0 chr4 99970320 99970359 -55659761 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1347 262 274 35 20 chr4 99971463 99971575 -55658545 - MIRb SINE MIR -86 122 14 6 1347 595 336 25 14 chr4 99971964 99972245 -55657875 + B4A SINE B4 1 284 -8 6 1347 413 195 0 44 chr4 99972343 99972434 -55657686 + PB1D10 SINE Alu 24 110 -7 6 1347 1576 134 5 0 chr4 99973907 99974131 -55655989 - URR1A DNA MER1_type 0 226 2 6 1347 247 24 95 0 chr4 99976255 99976297 -55653823 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1347 270 81 0 0 chr4 99976430 99976467 -55653653 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 6 1347 1532 251 82 15 chr4 99976543 99976943 -55653177 - Lx6 LINE L1 -22 7438 7012 6 1347 2473 143 85 4 chr4 99976941 99977074 -55653046 + L1_Mur2 LINE L1 4150 4285 -1592 6 1347 469 0 16 16 chr4 99977074 99977136 -55652984 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6 1347 2473 143 85 4 chr4 99977136 99977472 -55652648 + L1_Mur2 LINE L1 4286 4657 -1220 6 1347 383 382 35 51 chr4 99977867 99978179 -55651941 - ORR1E LTR MaLR -9 350 44 6 1347 270 0 0 0 chr4 99978230 99978260 -55651860 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1347 371 242 131 0 chr4 99979448 99979547 -55650573 + ORR1E LTR MaLR 27 138 -221 6 1347 189 229 226 41 chr4 99980720 99980866 -55649254 - MIRb SINE MIR -35 233 61 6 1347 2222 47 15 0 chr4 99980995 99981269 -55648851 - L1Md_F3 LINE L1 -2 6582 6305 6 1347 5498 123 92 5 chr4 99981658 99982539 -55647581 - RMER17B LTR ERVK 0 958 1 6 1347 180 0 0 0 chr4 99982755 99982775 -55647345 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 6 1347 1025 145 6 0 chr4 99982775 99982954 -55647166 + CT-rich Low_complexity Low_complexity 1 180 0 6 1347 1070 154 40 0 chr4 99982954 99983129 -55646991 - B2_Mm2 SINE B2 -12 183 2 6 1347 1078 266 50 59 chr4 99983447 99983848 -55646272 - MTE2a LTR MaLR -14 405 9 6 1347 234 370 31 8 chr4 99983994 99984122 -55645998 - ORR1E LTR MaLR -223 136 6 6 1347 339 65 0 0 chr4 99985258 99985304 -55644816 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1347 198 71 0 0 chr4 99985304 99985331 -55644789 + (CG)n Simple_repeat Simple_repeat 2 29 0 6 1347 780 96 0 0 chr4 99988409 99988524 -55641596 + (CA)n Simple_repeat Simple_repeat 1 115 0 6 1347 297 0 0 0 chr4 99988762 99988795 -55641325 + (CTAA)n Simple_repeat Simple_repeat 4 36 0 7 1347 558 67 0 0 chr4 99989595 99989670 -55640450 + (TATG)n Simple_repeat Simple_repeat 1 75 0 7 1347 189 135 27 0 chr4 99989817 99989854 -55640266 - MIRc SINE MIR -109 159 122 7 1347 544 154 16 57 chr4 99990571 99990665 -55639455 + ORR1B2 LTR MaLR 5 93 -274 7 1347 1445 178 81 24 chr4 99990665 99991033 -55639087 + ORR1B2 LTR MaLR 1 394 0 7 1347 759 264 23 17 chr4 99991284 99991461 -55638659 + B3A SINE B2 3 180 -18 7 1347 507 141 0 0 chr4 99991655 99991747 -55638373 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 7 1347 966 198 94 0 chr4 99992723 99992925 -55637195 - URR1B DNA MER1_type 0 225 5 7 1347 224 180 40 0 chr4 99993423 99993473 -55636647 + CT-rich Low_complexity Low_complexity 4 55 0 7 1347 567 325 35 15 chr4 99993570 99993770 -55636350 - B4A SINE B4 -19 273 70 7 1347 201 125 0 48 chr4 99993844 99993886 -55636234 + T-rich Low_complexity Low_complexity 1 40 0 7 1347 22 35 0 0 chr4 99995193 99995222 -55634898 + AT_rich Low_complexity Low_complexity 1 29 0 7 1347 588 298 37 51 chr4 99995274 99995568 -55634552 + B4A SINE B4 1 290 -2 7 1347 561 76 0 0 chr4 99995580 99995659 -55634461 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1347 785 324 50 9 chr4 99995706 99996049 -55634071 - MLT1A0 LTR MaLR -8 357 1 7 1347 223 338 26 13 chr4 99997214 99997292 -55632828 + MER5B DNA MER1_type 61 139 -39 7 1347 350 239 80 0 chr4 99997281 99997394 -55632726 - MIRb SINE MIR -51 217 96 7 1347 506 309 37 0 chr4 99998547 99998709 -55631411 + MIR SINE MIR 77 244 -18 7 1347 1381 220 154 2 chr4 99998891 99999288 -55630832 - RCHARR1 DNA MER1_type 0 974 518 7 1347 306 0 0 0 chr4 99999349 99999383 -55630737 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 7 1347 1425 152 159 65 chr4 99999385 99999736 -55630384 + ORR1C2 LTR MaLR 1 384 0 7 1347 598 319 0 0 chr4 99999777 99999937 -55630183 - Lx8 LINE L1 -273 7200 7041 7 1347 2406 294 42 22 chr4 100000072 100000838 -55629282 + Lx8 LINE L1 6173 6953 -520 1 1347 1947 245 11 4 chr4 100000838 100001298 -55628822 - RCHARR1 DNA MER1_type -481 493 31 2 1347 222 37 0 0 chr4 100001667 100001694 -55628426 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1347 258 215 15 30 chr4 100001694 100001761 -55628359 + Charlie1b DNA MER1_type 449 514 -9 4 1347 187 390 34 0 chr4 100001868 100001986 -55628134 + MIR SINE MIR 21 142 -120 5 1347 226 277 0 0 chr4 100002651 100002716 -55627404 + B3A SINE B2 2 66 -132 6 1347 288 0 0 0 chr4 100002762 100002794 -55627326 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1347 200 263 51 26 chr4 100003330 100003408 -55626712 + MIRb SINE MIR 96 175 -93 8 1347 277 332 5 93 chr4 100003755 100003971 -55626149 - MIR SINE MIR -37 225 29 9 1347 580 268 56 93 chr4 100005110 100005410 -55624710 + L1ME2 LINE L1 5877 6160 -2 1 1347 398 20 20 0 chr4 100005459 100005510 -55624610 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 1 1347 456 19 0 0 chr4 100005639 100005692 -55624428 + (GTGTG)n Simple_repeat Simple_repeat 5 57 0 1 1347 180 156 21 43 chr4 100006495 100006542 -55623578 - L3 LINE CR1 -881 3608 3563 1 1348 228 135 0 0 chr4 100008244 100008281 -55621839 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1348 695 287 90 11 chr4 100008955 100009223 -55620897 - B4A SINE B4 -3 289 1 1 1348 477 318 58 19 chr4 100009801 100010061 -55620059 - Zaphod DNA Tip100 -3 4028 3759 1 1348 250 279 0 37 chr4 100010150 100010232 -55619888 - Zaphod DNA Tip100 -565 3466 3388 1 1348 440 367 81 0 chr4 100010508 100010718 -55619402 - MLT1C LTR MaLR -21 446 220 1 1348 500 325 104 57 chr4 100010911 100011401 -55618719 - Zaphod DNA Tip100 -3446 585 73 1 1348 795 249 80 88 chr4 100011528 100012186 -55617934 - L1MB5 LINE L1 -270 6402 5763 1 1348 1242 55 0 0 chr4 100012203 100012349 -55617771 - B1_Mus2 SINE Alu 0 147 2 1 1348 354 297 75 16 chr4 100012349 100012529 -55617591 - L1MB5 LINE L1 -1241 5403 5211 1 1348 456 111 0 0 chr4 100012596 100012668 -55617452 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 2 1348 232 279 0 38 chr4 100012959 100013119 -55617001 + (CAGT)n Simple_repeat Simple_repeat 1 154 0 2 1348 451 255 102 55 chr4 100013252 100013613 -55616507 - L1MB5 LINE L1 -1482 5162 4785 1 1348 369 256 0 0 chr4 100013693 100013818 -55616302 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 1348 423 282 103 98 chr4 100013818 100014227 -55615893 - L1MB5 LINE L1 -1893 4751 4341 1 1348 23 33 0 0 chr4 100014310 100014340 -55615780 + AT_rich Low_complexity Low_complexity 1 30 0 2 1348 310 254 236 0 chr4 100014350 100014460 -55615660 - RSINE1 SINE B4 -28 137 2 2 1348 996 269 116 16 chr4 100014469 100014918 -55615202 - L1MB5 LINE L1 -2390 4254 3761 1 1348 303 259 136 25 chr4 100014947 100015145 -55614975 - L1MB5 LINE L1 -5451 1091 872 1 1348 462 258 25 8 chr4 100015536 100015657 -55614463 - L1MB5 LINE L1 -6139 403 281 1 1348 1014 188 114 0 chr4 100015676 100015878 -55614242 + URR1A DNA MER1_type 1 225 -1 2 1348 1918 175 54 54 chr4 100016076 100016298 -55613822 - MTD LTR MaLR -9 410 208 2 1348 3255 36 3 0 chr4 100016298 100016682 -55613438 - L1Md_F2 LINE L1 0 6582 6198 2 1348 1918 175 54 54 chr4 100016682 100016869 -55613251 - MTD LTR MaLR -212 207 1 2 1348 414 0 0 0 chr4 100017947 100017993 -55612127 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1348 812 270 4 18 chr4 100018471 100018697 -55611423 - MTEa LTR MaLR -15 364 142 2 1348 1155 278 113 5 chr4 100018842 100019416 -55610704 - Charlie5 DNA MER1_type -191 2433 1798 3 1348 745 207 14 7 chr4 100019416 100019562 -55610558 - Lx6 LINE L1 -722 6738 6592 3 1348 972 278 74 118 chr4 100019562 100020498 -55609622 - Charlie5 DNA MER1_type -1159 1465 571 3 1348 248 373 16 16 chr4 100020671 100020799 -55609321 + (CATG)n Simple_repeat Simple_repeat 1 128 0 3 1348 298 333 0 0 chr4 100020681 100020762 -55609358 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1348 234 213 177 3 chr4 100021173 100021272 -55608848 - L1MB7 LINE L1 -142 6036 5918 3 1348 294 233 96 0 chr4 100023501 100023574 -55606546 - ID4_ SINE ID 0 83 4 3 1348 390 223 87 0 chr4 100024029 100024132 -55605988 + PB1D7 SINE Alu 9 120 0 3 1348 221 337 0 21 chr4 100024591 100024688 -55605432 - MIRb SINE MIR 0 268 174 3 1348 545 292 21 57 chr4 100024815 100025122 -55604998 - Lx9 LINE L1 -1607 6089 5811 3 1348 1058 261 44 35 chr4 100025115 100025457 -55604663 - Lx9 LINE L1 -853 4994 4650 3 1348 571 251 23 23 chr4 100025490 100025665 -55604455 + L1_Rod LINE L1 4987 5161 -686 3 1348 398 196 61 43 chr4 100025663 100025805 -55604315 - L1_Mur2 LINE L1 -1488 4652 4486 4 1348 333 0 0 0 chr4 100026545 100026582 -55603538 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1348 37 23 0 0 chr4 100027486 100027530 -55602590 + AT_rich Low_complexity Low_complexity 1 44 0 4 1348 364 281 86 33 chr4 100027533 100027684 -55602436 - RSINE1 SINE B4 -4 161 3 4 1348 255 299 93 9 chr4 100027827 100027935 -55602185 + MIRb SINE MIR 120 236 -32 4 1348 417 181 0 0 chr4 100028877 100028971 -55601149 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1348 552 286 19 81 chr4 100028990 100029199 -55600921 - B4A SINE B4 0 292 97 4 1348 217 278 19 0 chr4 100029152 100029206 -55600914 - PB1D10 SINE Alu -58 59 5 4 1348 872 227 48 0 chr4 100030570 100030777 -55599343 + MER20 DNA MER1_type 3 219 0 4 1348 221 0 0 33 chr4 100031661 100031691 -55598429 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1348 834 251 25 25 chr4 100031757 100031777 -55598343 - B3A SINE B2 -1 197 181 5 1348 312 27 0 0 chr4 100031777 100031814 -55598306 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1348 834 251 25 25 chr4 100031814 100031989 -55598131 - B3A SINE B2 -18 180 2 5 1348 239 268 37 0 chr4 100032140 100032222 -55597898 - L2 LINE L2 -1153 2266 2182 5 1348 425 326 0 14 chr4 100032491 100032631 -55597489 + LTR16B1 LTR ERVL 25 162 -318 5 1348 665 317 86 43 chr4 100032641 100033182 -55596938 + Lx8 LINE L1 6932 7472 -1 5 1348 552 106 0 0 chr4 100033182 100033267 -55596853 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 1348 222 156 0 0 chr4 100034804 100034849 -55595271 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 1348 492 18 0 0 chr4 100034876 100034933 -55595187 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1348 187 311 109 22 chr4 100037390 100037482 -55592638 - MIRb SINE MIR -118 150 51 5 1348 411 143 14 0 chr4 100039884 100039954 -55590166 - B1F SINE Alu -78 71 1 5 1348 1193 41 0 7 chr4 100040071 100040217 -55589903 + B1_Mm SINE Alu 3 147 0 6 1348 815 172 0 15 chr4 100040263 100040399 -55589721 + B1_Mur4 SINE Alu 3 136 -14 6 1348 840 20 0 0 chr4 100040399 100040497 -55589623 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1348 386 77 37 37 chr4 100040502 100040583 -55589537 + GA-rich Low_complexity Low_complexity 5 85 0 6 1348 861 228 33 28 chr4 100040683 100040895 -55589225 + B3 SINE B2 1 213 -3 6 1348 1079 134 164 5 chr4 100041702 100041897 -55588223 - URR1A DNA MER1_type 0 226 1 6 1348 1661 175 29 101 chr4 100042969 100043445 -55586675 - RMER10A LTR ERVL 0 442 1 6 1348 372 247 268 21 chr4 100045719 100045913 -55584207 - MLT1D LTR MaLR -3 502 261 6 1348 313 308 77 50 chr4 100045941 100046122 -55583998 - MLT1D LTR MaLR -441 186 1 6 1348 429 20 0 0 chr4 100046982 100047032 -55583088 + (CCA)n Simple_repeat Simple_repeat 2 51 0 6 1348 775 154 0 20 chr4 100047249 100047395 -55582725 - URR1B DNA MER1_type 0 225 83 6 1348 313 216 66 84 chr4 100047395 100047409 -55582711 + CYRA11_Mm Unknown Y-chromosome 210 328 -289 7 1348 298 304 0 0 chr4 100048472 100048551 -55581569 + ID4 SINE ID 2 80 -3 7 1348 191 297 0 15 chr4 100050923 100050988 -55579132 + L3b LINE CR1 189 252 -230 7 1348 423 0 0 0 chr4 100053479 100053526 -55576594 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1348 180 0 0 0 chr4 100055878 100055898 -55574222 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1348 879 284 53 55 chr4 100056325 100056705 -55573415 + MTEa LTR MaLR 1 379 0 7 1348 188 290 29 0 chr4 100056873 100056942 -55573178 - L2a LINE L2 -2 3424 3354 7 1348 197 108 27 0 chr4 100057502 100057539 -55572581 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1348 1135 89 0 12 chr4 100059654 100059998 -55570122 + (TTC)n Simple_repeat Simple_repeat 1 339 0 7 1348 8324 112 51 25 chr4 100059998 100061059 -55569061 - Lx2B LINE L1 -22 6978 5883 7 1348 261 0 0 0 chr4 100061059 100061088 -55569032 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 8 1348 8324 112 51 25 chr4 100061088 100061322 -55568798 - Lx2B LINE L1 -1118 5882 5650 7 1348 5971 135 9 24 chr4 100061321 100061881 -55568239 - Lx2B LINE L1 -467 5410 4859 7 1348 4217 34 24 0 chr4 100061881 100062376 -55567744 + L1Md_F2 LINE L1 6076 6582 0 8 1348 5971 135 9 24 chr4 100062376 100062822 -55567298 - Lx2B LINE L1 -1019 4858 4419 7 1348 387 0 0 0 chr4 100064015 100064058 -55566062 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1348 983 157 148 25 chr4 100064137 100064333 -55565787 + URR1B DNA MER1_type 4 223 -2 8 1348 2172 180 15 12 chr4 100065065 100065476 -55564644 + MTD LTR MaLR 1 412 -7 8 1348 270 221 93 42 chr4 100065526 100065644 -55564476 + L1M5 LINE L1 5628 5751 -373 8 1348 417 86 0 0 chr4 100065780 100065838 -55564282 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 8 1348 213 39 0 0 chr4 100065870 100065896 -55564224 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 8 1348 323 259 93 12 chr4 100065935 100066021 -55564099 + RSINE1 SINE B4 32 124 -41 8 1348 459 0 0 0 chr4 100066021 100066072 -55564048 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1348 217 321 97 9 chr4 100068089 100068202 -55561918 - MIRm SINE MIR -133 143 21 9 1348 227 305 0 35 chr4 100068367 100068452 -55561668 + CT-rich Low_complexity Low_complexity 1 82 0 9 1348 2580 136 10 8 chr4 100068766 100069158 -55560962 - ORR1B1 LTR MaLR -1 393 1 9 1348 414 48 16 0 chr4 100070533 100070595 -55559525 + L1Md_F2 LINE L1 6520 6582 0 9 1348 252 0 0 0 chr4 100070622 100070650 -55559470 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1348 633 208 0 0 chr4 100071072 100071250 -55558870 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1348 516 211 0 27 chr4 100071279 100071464 -55558656 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1348 1250 258 193 21 chr4 100071464 100072052 -55558068 - RMER13A LTR ERVK -29 831 172 9 1348 321 26 0 0 chr4 100072126 100072164 -55557956 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1348 1387 281 154 30 chr4 100075236 100075705 -55554415 - L1MA5 LINE L1 -6 6294 5769 9 1348 429 20 0 0 chr4 100075705 100075755 -55554365 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1348 1387 281 154 30 chr4 100075755 100075791 -55554329 - L1MA5 LINE L1 -532 5768 5712 9 1348 339 85 0 0 chr4 100075791 100075838 -55554282 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 1 1348 1387 281 154 30 chr4 100075838 100075894 -55554226 - L1MA5 LINE L1 -589 5711 5645 9 1348 420 20 0 0 chr4 100075894 100075943 -55554177 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1348 1387 281 154 30 chr4 100075943 100076206 -55553914 - L1MA5 LINE L1 -656 5644 5367 9 1348 213 264 0 0 chr4 100076285 100076338 -55553782 + (CCCCAG)n Simple_repeat Simple_repeat 1 53 0 1 1348 181 315 56 11 chr4 100077136 100077226 -55552894 + MIRb SINE MIR 59 152 -116 1 1348 403 159 1 18 chr4 100077408 100077491 -55552629 - B3 SINE B2 -76 119 40 1 1348 183 80 0 0 chr4 100077491 100077516 -55552604 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1348 259 307 29 118 chr4 100077519 100077689 -55552431 - RSINE1 SINE B4 0 165 11 1 1348 202 128 0 60 chr4 100077761 100077811 -55552309 + T-rich Low_complexity Low_complexity 2 48 0 1 1348 883 142 6 6 chr4 100078757 100078920 -55551200 + GA-rich Low_complexity Low_complexity 1 163 0 1 1348 293 270 27 0 chr4 100079161 100079235 -55550885 + ID4_ SINE ID 5 80 -3 1 1348 180 0 0 0 chr4 100080041 100080061 -55550059 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1348 24 0 0 0 chr4 100080262 100080286 -55549834 + AT_rich Low_complexity Low_complexity 1 24 0 1 1348 223 321 28 28 chr4 100080779 100080888 -55549232 - L2b LINE L2 -7 3368 3260 1 1348 830 278 112 84 chr4 100082820 100082942 -55547178 + L1MB5 LINE L1 5587 5684 -490 1 1348 1073 187 24 5 chr4 100082942 100083152 -55546968 + B3 SINE B2 3 216 0 1 1348 830 278 112 84 chr4 100083152 100083191 -55546929 + L1MB5 LINE L1 5685 5727 -447 1 1348 822 217 41 55 chr4 100083191 100083410 -55546710 + ID_B1 SINE B4 1 216 -8 1 1348 830 278 112 84 chr4 100083410 100083711 -55546409 + L1MB5 LINE L1 5728 6063 -111 1 1348 209 179 0 0 chr4 100084319 100084358 -55545762 + C-rich Low_complexity Low_complexity 1 39 0 1 1348 461 217 8 57 chr4 100086054 100086176 -55543944 - PB1D10 SINE Alu -1 116 1 1 1348 214 366 21 0 chr4 100086417 100086510 -55543610 - MIR SINE MIR -84 124 30 1 1348 192 296 214 0 chr4 100087294 100087392 -55542728 - MIRc SINE MIR -137 131 13 1 1348 626 269 58 29 chr4 100087392 100087599 -55542521 + MER20 DNA MER1_type 1 213 -6 1 1348 387 0 0 0 chr4 100087779 100087822 -55542298 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1348 275 262 40 33 chr4 100087822 100087914 -55542206 - MIRc SINE MIR -142 126 25 1 1348 189 0 0 0 chr4 100087962 100087983 -55542137 + (ATG)n Simple_repeat Simple_repeat 3 23 0 1 1348 390 91 0 0 chr4 100087983 100088038 -55542082 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 1 1348 472 232 95 0 chr4 100088100 100088195 -55541925 + RSINE1 SINE B4 60 163 -2 1 1348 189 147 0 0 chr4 100088199 100088233 -55541887 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1348 327 104 0 0 chr4 100090617 100090665 -55539455 + (TTG)n Simple_repeat Simple_repeat 2 49 0 1 1348 646 297 24 0 chr4 100090813 100090978 -55539142 - B3A SINE B2 -22 176 8 1 1348 188 0 74 0 chr4 100091110 100091137 -55538983 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1348 810 184 213 6 chr4 100091137 100091306 -55538814 - B3 SINE B2 -8 208 5 1 1348 284 214 71 0 chr4 100092653 100092723 -55537397 + L1MB3 LINE L1 5323 5397 -783 1 1348 636 316 14 11 chr4 100092770 100093011 -55537109 + L1MB3 LINE L1 5490 5734 -557 1 1348 1613 185 138 19 chr4 100093018 100093381 -55536739 + MTD LTR MaLR 6 411 -8 1 1348 472 243 129 25 chr4 100093381 100093627 -55536493 + L1MB3 LINE L1 5766 6059 -112 1 1348 216 0 0 0 chr4 100094518 100094542 -55535578 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1348 490 254 36 29 chr4 100095031 100095169 -55534951 + RSINE1 SINE B4 3 141 -24 1 1348 387 41 0 0 chr4 100095169 100095218 -55534902 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1348 495 87 0 0 chr4 100095326 100095395 -55534725 + (CTG)n Simple_repeat Simple_repeat 3 71 0 1 1348 369 302 33 20 chr4 100095954 100096106 -55534014 - MIRc SINE MIR -25 243 90 1 1348 261 75 0 0 chr4 100096253 100096293 -55533827 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1348 1300 110 0 30 chr4 100099890 100100087 -55530033 - B2_Mm2 SINE B2 -3 192 2 1 1348 4484 159 63 31 chr4 100100162 100100973 -55529147 - Lx5 LINE L1 0 7050 6214 1 1348 216 130 0 0 chr4 100102988 100103034 -55527086 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1348 735 72 0 0 chr4 100103436 100103547 -55526573 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 1348 637 243 0 14 chr4 100104052 100104194 -55525926 + B3 SINE B2 1 140 -76 1 1348 360 0 0 0 chr4 100104540 100104580 -55525540 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1348 389 329 12 61 chr4 100104600 100104765 -55525355 + MIRb SINE MIR 5 161 -107 1 1348 228 318 71 53 chr4 100105241 100105354 -55524766 - MIRb SINE MIR -132 136 22 1 1348 567 305 27 33 chr4 100105479 100105662 -55524458 + B3A SINE B2 1 182 -16 1 1348 233 343 0 0 chr4 100106350 100106420 -55523700 + MIRb SINE MIR 23 92 -176 1 1348 405 0 0 0 chr4 100107329 100107374 -55522746 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 1 1348 21 0 0 0 chr4 100108148 100108169 -55521951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1348 22 0 0 0 chr4 100109682 100109704 -55520416 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 254 275 25 0 chr4 100110379 100110459 -55519661 + ID4_ SINE ID 1 82 -1 1 1348 1160 204 0 9 chr4 100110575 100110802 -55519318 + URR1B DNA MER1_type 1 225 0 1 1348 253 299 0 0 chr4 100111189 100111256 -55518864 - L1MC LINE L1 -2025 5857 5791 1 1348 5287 42 5 3 chr4 100111356 100111960 -55518160 - L1Md_F2 LINE L1 -3 6579 5975 1 1348 292 296 90 20 chr4 100112002 100112102 -55518018 - PB1D10 SINE Alu -10 107 1 1 1348 8156 40 1 2 chr4 100112172 100113137 -55516983 - L1Md_T LINE L1 0 6582 5619 1 1348 342 238 24 24 chr4 100117556 100117638 -55512482 + ID4 SINE ID 2 83 0 1 1348 246 365 27 36 chr4 100118447 100118558 -55511562 + MER5A DNA MER1_type 46 155 -34 1 1348 981 155 7 13 chr4 100118558 100118708 -55511412 + B1_Mur4 SINE Alu 2 150 0 1 1348 290 319 113 60 chr4 100119047 100119197 -55510923 + RSINE1 SINE B4 2 159 -6 1 1348 330 115 0 0 chr4 100119323 100119375 -55510745 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 1 1348 693 66 0 0 chr4 100120923 100121014 -55509106 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1 1348 1687 308 57 22 chr4 100121129 100121973 -55508147 - Lx7 LINE L1 -1778 5918 5042 1 1348 913 189 241 30 chr4 100121982 100122112 -55508008 - Lx9 LINE L1 -1 7643 7483 1 1348 306 129 0 0 chr4 100122112 100122174 -55507946 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1348 913 189 241 30 chr4 100122174 100122338 -55507782 - Lx9 LINE L1 -162 7482 7287 1 1348 7921 74 14 0 chr4 100122341 100124057 -55506063 - L1_Mus1 LINE L1 0 6567 4820 1 1348 3576 196 105 22 chr4 100124059 100124891 -55505229 - Lx9 LINE L1 -346 7298 6398 1 1348 1106 305 94 17 chr4 100124880 100125528 -55504592 - L1M2 LINE L1 -2540 3603 2906 1 1348 8949 177 40 35 chr4 100125541 100127559 -55502561 + Lx7 LINE L1 2741 4768 -1112 1 1348 5763 48 6 0 chr4 100127552 100128263 -55501857 - L1_Mm LINE L1 -1454 4429 3715 1 1348 9250 57 14 0 chr4 100128262 100129410 -55500710 + L1_Mm LINE L1 4392 5555 -328 1 1348 4480 56 4 0 chr4 100129410 100129931 -55500189 + L1Md_F2 LINE L1 6048 6570 -12 1 1348 490 204 0 39 chr4 100129932 100130034 -55500086 + Lx7 LINE L1 4755 4852 -1028 1 1348 891 178 0 0 chr4 100130052 100130221 -55499899 + GA-rich Low_complexity Low_complexity 2 170 0 1 1348 180 0 0 0 chr4 100130232 100130252 -55499868 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1348 8410 210 65 24 chr4 100130252 100132961 -55497159 + Lx7 LINE L1 4862 7679 -17 1 1348 22 35 0 0 chr4 100132973 100133002 -55497118 + AT_rich Low_complexity Low_complexity 1 29 0 1 1348 1209 61 7 7 chr4 100133605 100133753 -55496367 - B1_Mus1 SINE Alu 0 148 1 1 1348 200 178 0 43 chr4 100133795 100133842 -55496278 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 1 1348 426 280 90 70 chr4 100134007 100134207 -55495913 - MamRep1879 DNA hAT? -12 204 1 1 1348 383 331 93 19 chr4 100136020 100136414 -55493706 - MLT1E3 LTR MaLR -38 586 139 1 1348 4360 188 62 6 chr4 100136934 100137830 -55492290 + L1_Rod LINE L1 451 1397 -4450 1 1348 374 296 26 17 chr4 100137830 100137947 -55492173 + URR1B DNA MER1_type 2 119 -106 1 1348 336 83 0 0 chr4 100138226 100138274 -55491846 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 168 252 332 63 63 chr4 100138929 100139250 -55490870 + Charlie24 DNA MER1_type 663 994 -1456 1 1349 295 320 19 7 chr4 100139546 100139784 -55490336 + Charlie10 DNA MER1_type 1934 2294 -528 1 1349 21 57 0 0 chr4 100139854 100139889 -55490231 + AT_rich Low_complexity Low_complexity 1 35 0 1 1349 879 112 19 56 chr4 100139963 100140123 -55489997 + URR1B DNA MER1_type 72 225 0 1 1349 14139 208 35 67 chr4 100140124 100140939 -55489181 + L1_Rod LINE L1 1404 2209 -3638 1 1349 858 138 63 28 chr4 100140939 100141081 -55489039 + B1_Mus1 SINE Alu 2 148 0 1 1349 14139 208 35 67 chr4 100141081 100142168 -55487952 + L1_Rod LINE L1 2210 3233 -2614 1 1349 468 0 0 0 chr4 100142168 100142220 -55487900 + (CAAAC)n Simple_repeat Simple_repeat 3 54 0 1 1349 14139 208 35 67 chr4 100142220 100142571 -55487549 + L1_Rod LINE L1 3234 3594 -2253 1 1349 1313 22 0 38 chr4 100142571 100142756 -55487364 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 1 1349 684 0 0 0 chr4 100142756 100142832 -55487288 + (GGAGA)n Simple_repeat Simple_repeat 1 76 0 1 1349 14139 208 35 67 chr4 100142832 100143884 -55486236 + L1_Rod LINE L1 3595 4610 -1237 1 1349 421 16 32 16 chr4 100143884 100143946 -55486174 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 1 1349 14139 208 35 67 chr4 100143946 100144583 -55485537 + L1_Rod LINE L1 4611 5221 -626 1 1349 4209 221 157 31 chr4 100144628 100146049 -55484071 + Lx9 LINE L1 5902 7514 -130 1 1349 342 0 0 0 chr4 100146049 100146087 -55484033 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1349 1411 219 152 13 chr4 100146087 100146172 -55483948 + Lx9 LINE L1 7515 7598 -46 1 1349 1899 204 40 8 chr4 100146173 100146543 -55483577 - MTD LTR MaLR -26 393 12 1 1349 808 241 60 20 chr4 100146694 100146893 -55483227 + B3 SINE B2 1 207 -9 1 1349 195 42 0 0 chr4 100146893 100146917 -55483203 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1 1349 2462 49 0 0 chr4 100147696 100148000 -55482120 + ORR1A1 LTR MaLR 5 308 -38 1 1349 921 29 0 0 chr4 100148000 100148103 -55482017 + L1Md_F3 LINE L1 6292 6394 -188 1 1349 13046 5 0 0 chr4 100148104 100149539 -55480581 + L1Md_A LINE L1 4152 5586 -297 1 1349 9642 2 0 0 chr4 100149539 100150535 -55479585 + L1Md_A LINE L1 5587 6582 0 1 1349 1615 32 0 16 chr4 100150542 100150735 -55479385 + L1Md_F3 LINE L1 6381 6570 -14 1 1349 368 121 0 9 chr4 100150738 100150799 -55479321 + ORR1A1 LTR MaLR 274 345 -1 1 1349 929 58 0 0 chr4 100150801 100150922 -55479198 + ORR1A1-int LTR MaLR 1 121 -977 1 1349 608 86 97 0 chr4 100150919 100151012 -55479108 + MTB LTR MaLR 299 400 0 1 1349 301 153 14 14 chr4 100152193 100152266 -55477854 + CT-rich Low_complexity Low_complexity 3 75 0 1 1349 183 42 0 0 chr4 100152268 100152292 -55477828 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1349 653 90 0 39 chr4 100152292 100152396 -55477724 - B1_Mm SINE Alu -9 138 39 2 1349 32 75 0 0 chr4 100153129 100153196 -55476924 + AT_rich Low_complexity Low_complexity 1 67 0 2 1349 1058 141 38 0 chr4 100153799 100153984 -55476136 + Lx LINE L1 6462 6653 -1 2 1349 243 88 0 0 chr4 100154129 100154163 -55475957 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 2 1349 212 179 0 0 chr4 100154164 100154203 -55475917 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 2 1349 250 234 19 0 chr4 100154321 100154428 -55475692 + GA-rich Low_complexity Low_complexity 2 110 0 2 1349 236 301 110 14 chr4 100154711 100154856 -55475264 - L2c LINE L2 -108 3279 3121 2 1349 529 292 88 7 chr4 100155089 100155237 -55474883 + RSINE1 SINE B4 6 165 0 2 1349 27 29 0 0 chr4 100155251 100155285 -55474835 + AT_rich Low_complexity Low_complexity 1 34 0 2 1349 369 0 0 0 chr4 100155533 100155574 -55474546 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1349 1419 69 6 0 chr4 100155807 100155980 -55474140 + B2_Mm1a SINE B2 1 174 -19 2 1349 509 248 129 13 chr4 100156029 100156184 -55473936 - B3A SINE B2 -25 173 1 2 1349 318 299 128 47 chr4 100157027 100157199 -55472921 - MER2 DNA MER2_type -140 205 20 2 1349 258 283 121 26 chr4 100157281 100157397 -55472723 + L2b LINE L2 3277 3421 -5 2 1349 414 223 31 55 chr4 100157408 100157536 -55472584 + RSINE1 SINE B4 41 165 0 2 1349 210 390 0 0 chr4 100157821 100157903 -55472217 + B4A SINE B4 39 120 -172 2 1349 386 280 88 88 chr4 100158801 100158993 -55471127 + B4A SINE B4 101 292 0 2 1349 25 0 0 0 chr4 100159223 100159248 -55470872 + AT_rich Low_complexity Low_complexity 1 25 0 2 1349 466 227 20 30 chr4 100159427 100159527 -55470593 - PB1D10 SINE Alu -18 99 1 2 1349 420 248 128 0 chr4 100160429 100160570 -55469550 - RSINE1 SINE B4 -4 161 3 2 1349 723 231 15 0 chr4 100160729 100160863 -55469257 - RSINE1 SINE B4 -19 146 11 2 1349 1618 214 80 41 chr4 100160952 100161342 -55468778 - MTD LTR MaLR -14 405 1 2 1349 24 0 0 0 chr4 100161401 100161425 -55468695 + AT_rich Low_complexity Low_complexity 1 24 0 2 1349 636 321 89 91 chr4 100161682 100162110 -55468010 + MLT1E2 LTR MaLR 200 626 -1 2 1349 1046 80 0 0 chr4 100162421 100162558 -55467562 - B1_Mus1 SINE Alu -2 146 10 2 1349 611 244 21 72 chr4 100162425 100162619 -55467501 - ID_B1 SINE B4 -6 218 35 2 1349 322 240 140 28 chr4 100163041 100163148 -55466972 - RSINE1 SINE B4 -1 164 46 2 1349 594 51 0 0 chr4 100163152 100163230 -55466890 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1349 1418 237 33 13 chr4 100164398 100164702 -55465418 - MTE2b LTR MaLR -64 315 6 2 1349 2258 259 64 51 chr4 100164708 100165976 -55464144 - MTE2b-int LTR MaLR -1 1579 2 2 1349 1891 76 4 12 chr4 100166015 100166268 -55463852 + Lx3_Mus LINE L1 6759 7009 0 2 1349 474 279 175 10 chr4 100166321 100166515 -55463605 - MTE2b LTR MaLR -152 227 2 2 1349 240 282 84 0 chr4 100167645 100167716 -55462404 + L3 LINE CR1 4152 4228 -261 2 1349 7099 8 0 0 chr4 100168314 100169122 -55460998 + L1Md_T LINE L1 5808 6582 0 2 1349 2047 157 98 13 chr4 100169825 100170213 -55459907 + MTC LTR MaLR 1 421 0 2 1349 248 93 47 0 chr4 100171066 100171109 -55459011 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 2 1349 8213 146 57 8 chr4 100171119 100171337 -55458783 - Lx4B LINE L1 -7 7051 6820 2 1349 315 0 0 0 chr4 100171337 100171372 -55458748 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1349 8213 146 57 8 chr4 100171372 100171626 -55458494 - Lx4B LINE L1 -239 6819 6552 2 1349 2156 141 71 8 chr4 100171626 100172005 -55458115 - RLTR9D LTR ERVK 0 403 1 2 1349 8213 146 57 8 chr4 100172005 100172380 -55457740 - Lx4B LINE L1 -507 6551 6161 2 1349 504 0 0 0 chr4 100172380 100172436 -55457684 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1349 10761 124 36 53 chr4 100172436 100174591 -55455529 - Lx4B LINE L1 -898 6160 4044 2 1349 1975 192 101 7 chr4 100174850 100174863 -55455257 - Lx5 LINE L1 -4 7046 7033 2 1349 306 0 0 0 chr4 100174863 100174897 -55455223 + (CTTA)n Simple_repeat Simple_repeat 2 35 0 2 1349 1975 192 101 7 chr4 100174897 100175308 -55454812 - Lx5 LINE L1 -18 7032 6583 2 1349 760 150 0 0 chr4 100175306 100175419 -55454701 + Lx4B LINE L1 6411 6523 -535 2 1349 709 252 64 43 chr4 100175650 100175978 -55454142 - L1M2 LINE L1 -1488 4655 4321 2 1349 985 278 36 75 chr4 100175978 100176340 -55453780 + ORR1E LTR MaLR 1 348 -11 2 1349 590 243 7 0 chr4 100176517 100176651 -55453469 - B3 SINE B2 -4 212 78 2 1349 459 133 0 13 chr4 100176651 100176727 -55453393 + RLTR26 LTR ERVK 1 75 -567 2 1349 4217 125 88 29 chr4 100176726 100177633 -55452487 + RMER17B LTR ERVK 28 958 0 2 1349 366 183 0 0 chr4 100177633 100177690 -55452430 - B3 SINE B2 -133 83 27 2 1349 473 289 24 54 chr4 100177705 100177910 -55452210 - L1M2 LINE L1 -1754 4825 4627 2 1349 194 136 23 0 chr4 100177910 100177954 -55452166 + CT-rich Low_complexity Low_complexity 3 47 0 2 1349 249 227 64 39 chr4 100177965 100178043 -55452077 - B1F2 SINE Alu -63 86 7 2 1349 1029 221 9 0 chr4 100178083 100178296 -55451824 - B3 SINE B2 0 216 2 2 1349 383 344 17 0 chr4 100178302 100178482 -55451638 - L1M2 LINE L1 -1944 4638 4456 2 1349 305 256 15 104 chr4 100178495 100178630 -55451490 - MTC LTR MaLR -17 362 240 2 1349 326 314 25 17 chr4 100178667 100178787 -55451333 - MTC LTR MaLR -300 121 1 2 1349 1507 304 52 50 chr4 100178787 100180608 -55449512 - L1M2 LINE L1 -2119 4463 2469 2 1349 443 209 119 37 chr4 100180929 100181063 -55449057 - RSINE1 SINE B4 -17 148 4 2 1349 1296 163 152 48 chr4 100181470 100181779 -55448341 + RLTR33 LTR ERVK 175 515 -163 2 1349 353 198 10 0 chr4 100182190 100182286 -55447834 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1349 397 244 0 0 chr4 100182286 100182368 -55447752 + MTEa LTR MaLR 22 103 -276 2 1349 869 231 57 0 chr4 100182380 100182592 -55447528 + MTEa LTR MaLR 156 379 0 2 1349 782 175 14 120 chr4 100182828 100183036 -55447084 + ORR1D1 LTR MaLR 1 186 -188 2 1349 501 102 18 9 chr4 100183038 100183147 -55446973 + (TC)n Simple_repeat Simple_repeat 1 110 0 2 1349 408 245 9 9 chr4 100183147 100183254 -55446866 + ORR1D1 LTR MaLR 164 270 -104 2 1349 603 27 0 0 chr4 100184950 100185023 -55445097 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1349 233 29 0 29 chr4 100185258 100185293 -55444827 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1349 1408 218 48 273 chr4 100185506 100185849 -55444271 + RMER19C LTR ERVK 1 266 -345 2 1349 1085 71 36 0 chr4 100185849 100185989 -55444131 - B1_Mus1 SINE Alu -1 147 3 2 1349 1408 218 48 273 chr4 100185989 100186433 -55443687 + RMER19C LTR ERVK 267 611 0 2 1349 242 280 132 35 chr4 100187051 100187225 -55442895 - HAL1 LINE L1 -2272 235 45 2 1349 595 295 27 14 chr4 100187431 100187610 -55442510 - B3A SINE B2 -34 182 1 2 1349 1029 140 0 0 chr4 100187900 100188078 -55442042 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1349 454 264 34 87 chr4 100188107 100188314 -55441806 - B3A SINE B2 -2 196 1 2 1349 459 0 0 0 chr4 100189157 100189208 -55440912 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1349 365 0 22 0 chr4 100189208 100189252 -55440868 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1349 287 310 49 69 chr4 100189269 100189510 -55440610 - B4 SINE B4 -14 278 51 2 1349 711 138 9 0 chr4 100190798 100190907 -55439213 - B1_Mur4 SINE Alu 0 150 41 2 1349 225 218 35 52 chr4 100190855 100190913 -55439207 - 4.5SRNA scRNA scRNA -8 86 30 2 1349 378 0 0 0 chr4 100191057 100191099 -55439021 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1349 647 192 164 6 chr4 100191119 100191302 -55438818 - MTEa LTR MaLR 0 379 168 2 1349 850 262 5 40 chr4 100191322 100191545 -55438575 + B3 SINE B2 2 216 0 2 1349 445 261 24 105 chr4 100191549 100191759 -55438361 - Tigger7 DNA MER2_type -159 2332 2140 2 1349 613 332 76 23 chr4 100191760 100192022 -55438098 - Tigger7 DNA MER2_type -2214 277 2 2 1349 21 0 0 0 chr4 100192124 100192145 -55437975 + AT_rich Low_complexity Low_complexity 1 21 0 2 1349 245 224 17 0 chr4 100192194 100192252 -55437868 - PB1D10 SINE Alu -49 68 10 2 1349 742 312 7 50 chr4 100192634 100192914 -55437206 - B4A SINE B4 0 292 25 2 1349 232 242 0 46 chr4 100192862 100192927 -55437193 - B3A SINE B2 -123 75 14 2 1349 202 312 83 30 chr4 100193576 100193708 -55436412 - MIR SINE MIR -117 145 7 2 1349 433 221 87 14 chr4 100196546 100196684 -55433436 + B1F1 SINE Alu 1 148 -1 2 1349 271 266 130 23 chr4 100199675 100199806 -55430314 + MIRb SINE MIR 30 178 -90 2 1349 523 251 30 24 chr4 100200419 100200586 -55429534 + MER5B DNA MER1_type 8 175 -3 2 1349 224 143 0 0 chr4 100201605 100201647 -55428473 + ID4 SINE ID 40 81 -2 2 1349 639 178 99 49 chr4 100202422 100202564 -55427556 + B1_Mur4 SINE Alu 1 149 -1 2 1349 574 216 116 0 chr4 100203228 100203399 -55426721 - B3 SINE B2 -5 193 1 2 1349 618 222 27 14 chr4 100204224 100204370 -55425750 - B1_Mus1 SINE Alu 0 148 1 2 1349 377 195 84 12 chr4 100204370 100204453 -55425667 - MER57A-int LTR ERV1 -301 5886 5798 2 1349 304 77 39 0 chr4 100204941 100204993 -55425127 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1349 285 51 0 0 chr4 100205152 100205191 -55424929 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1349 671 302 73 24 chr4 100205233 100205481 -55424639 + B4A SINE B4 26 285 -7 2 1349 23 54 0 0 chr4 100205563 100205600 -55424520 + AT_rich Low_complexity Low_complexity 1 37 0 2 1349 423 0 0 0 chr4 100205692 100205739 -55424381 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1349 1466 60 22 0 chr4 100206674 100206859 -55423261 - B2_Mm2 SINE B2 -5 190 2 2 1349 428 260 29 0 chr4 100206950 100207054 -55423066 - B1F1 SINE Alu -42 107 1 2 1349 276 307 0 13 chr4 100206994 100207070 -55423050 - B4A SINE B4 -147 145 71 2 1349 227 143 0 0 chr4 100207114 100207149 -55422971 + ZP3AR Satellite Satellite 42 76 -136 2 1349 221 277 0 15 chr4 100207115 100207181 -55422939 + ID4 SINE ID 1 65 -18 2 1349 180 286 20 0 chr4 100208291 100208340 -55421780 + L2c LINE L2 3329 3378 -9 2 1349 23 33 0 0 chr4 100208367 100208397 -55421723 + AT_rich Low_complexity Low_complexity 1 30 0 2 1349 1189 239 61 74 chr4 100209062 100209478 -55420642 + MTD LTR MaLR 10 405 -14 3 1349 225 139 0 0 chr4 100210421 100210464 -55419656 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1349 189 196 0 0 chr4 100210767 100210813 -55419307 + A-rich Low_complexity Low_complexity 1 46 0 3 1349 254 352 0 0 chr4 100210832 100210903 -55419217 + ID_B1 SINE B4 84 154 -70 3 1349 404 249 16 12 chr4 100211014 100211258 -55418862 + GA-rich Low_complexity Low_complexity 1 245 0 3 1349 548 267 0 6 chr4 100211258 100211439 -55418681 + G-rich Low_complexity Low_complexity 1 180 0 3 1349 501 254 11 6 chr4 100211472 100211646 -55418474 + G-rich Low_complexity Low_complexity 1 175 0 3 1349 226 318 0 0 chr4 100211646 100211709 -55418411 + GA-rich Low_complexity Low_complexity 4 66 0 3 1349 221 229 21 0 chr4 100212376 100212424 -55417696 + CT-rich Low_complexity Low_complexity 1 49 0 3 1349 21 71 0 0 chr4 100212459 100212501 -55417619 + AT_rich Low_complexity Low_complexity 1 42 0 3 1349 507 217 16 65 chr4 100213030 100213153 -55416967 + ID_B1 SINE B4 94 210 -14 3 1349 733 261 61 70 chr4 100213453 100213884 -55416236 + Lx7 LINE L1 7285 7674 -22 3 1349 1150 71 0 0 chr4 100213890 100214031 -55416089 + B1_Mus2 SINE Alu 1 141 -6 3 1349 203 0 0 36 chr4 100214033 100214061 -55416059 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1349 362 261 54 0 chr4 100214162 100214254 -55415866 + PB1D10 SINE Alu 15 111 -6 3 1349 25 51 0 0 chr4 100214266 100214305 -55415815 + AT_rich Low_complexity Low_complexity 1 39 0 3 1349 228 317 0 47 chr4 100214838 100214924 -55415196 + ID2 SINE ID 1 82 -1 3 1349 932 279 42 11 chr4 100214851 100215116 -55415004 + B4 SINE B4 14 286 -6 3 1349 296 256 79 8 chr4 100215233 100215359 -55414761 + L1M2 LINE L1 2469 2603 -4246 3 1349 690 328 96 29 chr4 100215516 100216354 -55413766 + L1M2 LINE L1 2772 3673 -3172 3 1349 478 259 1 21 chr4 100216386 100216549 -55413571 + L1M2 LINE L1 5150 5312 -1530 3 1349 483 211 170 47 chr4 100216732 100216968 -55413152 + L1MEf LINE L1 1262 1524 -4891 3 1349 267 279 12 25 chr4 100216968 100217049 -55413071 + ID2 SINE ID 3 82 -1 3 1349 441 245 53 40 chr4 100217049 100217091 -55413029 + L1MEf LINE L1 1472 1513 -4887 3 1349 749 170 15 15 chr4 100217317 100217454 -55412666 + B1_Mur3 SINE Alu 1 137 -12 3 1349 201 167 0 0 chr4 100217471 100217507 -55412613 + A-rich Low_complexity Low_complexity 1 36 0 3 1349 233 258 30 15 chr4 100217521 100217602 -55412518 + ID2 SINE ID 18 99 -53 3 1349 507 33 0 0 chr4 100218092 100218153 -55411967 + (TCC)n Simple_repeat Simple_repeat 3 63 0 3 1349 317 286 36 0 chr4 100218514 100218598 -55411522 + B1F1 SINE Alu 1 87 -62 3 1349 450 0 0 0 chr4 100218602 100218652 -55411468 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1349 396 0 0 0 chr4 100218652 100218695 -55411425 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1349 324 0 0 0 chr4 100218695 100218730 -55411390 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1349 378 280 256 0 chr4 100218932 100219246 -55410874 + Tigger7 DNA MER2_type 41 436 -2055 3 1349 246 299 27 36 chr4 100219350 100219461 -55410659 + Tigger7 DNA MER2_type 2377 2486 -5 3 1349 297 315 136 3 chr4 100221667 100221852 -55408268 - MLT1E1A LTR MaLR -10 670 398 3 1349 560 254 44 39 chr4 100221999 100222179 -55407941 + B3A SINE B2 2 182 -16 3 1349 603 102 0 0 chr4 100222351 100222439 -55407681 + (GAA)n Simple_repeat Simple_repeat 3 90 0 3 1349 909 0 0 0 chr4 100222887 100222988 -55407132 + (TTC)n Simple_repeat Simple_repeat 2 102 0 3 1349 849 93 140 21 chr4 100222989 100223132 -55406988 - B2_Mm2 SINE B2 -34 161 2 3 1349 21 36 0 0 chr4 100223539 100223567 -55406553 + AT_rich Low_complexity Low_complexity 1 28 0 3 1349 587 223 166 0 chr4 100223678 100223835 -55406285 - B3A SINE B2 -15 183 1 3 1349 937 141 16 26 chr4 100223964 100224154 -55405966 - RMER6A LTR ERVK -568 188 1 3 1349 944 287 82 63 chr4 100224155 100224631 -55405489 - Lx9 LINE L1 -561 7083 6599 3 1349 588 29 0 0 chr4 100224663 100224733 -55405387 + (TTTTC)n Simple_repeat Simple_repeat 2 71 0 3 1349 1134 43 0 7 chr4 100224737 100224876 -55405244 - B1_Mus1 SINE Alu -10 138 1 3 1349 354 260 9 63 chr4 100224965 100225059 -55405061 - MLT1A0 LTR MaLR -2 363 269 3 1349 4014 132 52 14 chr4 100225059 100225712 -55404408 - RLTR33 LTR ERVK 0 678 1 3 1349 354 260 9 63 chr4 100225712 100225728 -55404392 - MLT1A0 LTR MaLR -97 268 259 3 1349 397 274 101 20 chr4 100226185 100226334 -55403786 + MLT1E1A LTR MaLR 286 446 -234 3 1349 325 153 28 0 chr4 100226544 100226616 -55403504 + CT-rich Low_complexity Low_complexity 2 75 0 3 1349 453 329 40 12 chr4 100226658 100226974 -55403146 - L1M5 LINE L1 -1259 4884 4543 3 1349 12553 47 2 19 chr4 100227045 100229338 -55400782 - L1Md_F3 LINE L1 -3 6581 4326 3 1349 38773 52 4 4 chr4 100229316 100235480 -55394640 - L1Md_F3 LINE L1 -1 6581 420 3 1349 25 65 0 0 chr4 100235608 100235654 -55394466 + AT_rich Low_complexity Low_complexity 1 46 0 3 1349 1617 47 0 0 chr4 100235776 100235967 -55394153 - B2_Mm1a SINE B2 -2 191 1 3 1349 1031 295 98 77 chr4 100236169 100236475 -55393645 - RLTR18 LTR ERVK -26 590 293 3 1349 1490 178 26 59 chr4 100236475 100236815 -55393305 - ORR1A4 LTR MaLR 0 329 1 3 1349 1031 295 98 77 chr4 100236815 100237080 -55393040 - RLTR18 LTR ERVK -324 292 7 3 1349 3237 43 15 2 chr4 100237883 100238278 -55391842 - MTB LTR MaLR 0 400 1 3 1349 189 0 0 0 chr4 100239160 100239181 -55390939 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1349 270 0 0 0 chr4 100239985 100240015 -55390105 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1349 1027 165 120 0 chr4 100241135 100241335 -55388785 + URR1A DNA MER1_type 2 225 -1 3 1349 1006 231 68 43 chr4 100241477 100241802 -55388318 + RLTR14 LTR ERV1 1 333 -49 3 1349 3466 122 174 13 chr4 100242173 100242559 -55387561 - RMER17D2 LTR ERVK 0 809 320 3 1349 746 22 0 11 chr4 100242559 100242652 -55387468 + (GGAGA)n Simple_repeat Simple_repeat 3 94 0 3 1349 3466 122 174 13 chr4 100242652 100242962 -55387158 - RMER17D2 LTR ERVK -490 319 2 3 1349 357 141 62 0 chr4 100243179 100243243 -55386877 - RLTR42-int LTR ERVK -3915 1607 1540 3 1349 287 213 0 62 chr4 100243639 100243719 -55386401 - RLTR28 LTR ERVL -14 510 436 3 1349 450 229 109 10 chr4 100243803 100243990 -55386130 - RLTR28 LTR ERVL -164 317 90 3 1349 33181 56 0 3 chr4 100244107 100248288 -55381832 + L1Md_F2 LINE L1 1415 5585 -298 3 1349 8257 49 3 0 chr4 100248289 100249281 -55380839 + L1Md_F2 LINE L1 5587 6581 -1 3 1349 9995 155 38 83 chr4 100249283 100250515 -55379605 - L1_Mur3 LINE L1 -1969 3911 2686 3 1349 241 47 0 44 chr4 100250515 100250560 -55379560 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 3 1349 845 19 0 0 chr4 100250560 100250667 -55379453 - B1_Mus1 SINE Alu -13 135 29 3 1349 9995 155 38 83 chr4 100250667 100251743 -55378377 - L1_Mur3 LINE L1 -3195 2685 1605 3 1349 2067 126 71 3 chr4 100252192 100252256 -55377864 - L1_Mur3 LINE L1 -4270 1610 1532 3 1349 441 0 0 0 chr4 100252256 100252305 -55377815 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1349 2067 123 50 1 chr4 100252305 100252656 -55377464 - L1_Mur3 LINE L1 -4349 1531 1165 3 1349 1319 297 86 69 chr4 100252658 100253451 -55376669 - Lx8 LINE L1 -934 6539 5734 3 1349 310 248 109 17 chr4 100253724 100253843 -55376277 - Lx2B LINE L1 -1115 5893 5750 3 1349 352 209 35 11 chr4 100255118 100255205 -55374915 + PB1D10 SINE Alu 21 109 -8 3 1349 400 289 201 15 chr4 100255828 100256102 -55374018 - Lx8 LINE L1 -1931 5765 5437 3 1349 569 263 97 15 chr4 100256144 100256352 -55373768 - Lx8 LINE L1 -779 5518 5278 3 1349 374 308 26 0 chr4 100256523 100256640 -55373480 - RSINE1 SINE B4 -43 122 3 3 1349 518 311 86 15 chr4 100256641 100257230 -55372890 - Lx8 LINE L1 -940 5203 4545 3 1349 1726 310 83 58 chr4 100257252 100257658 -55372462 - Lx8 LINE L1 -2046 4097 3660 3 1349 401 145 0 0 chr4 100257658 100257720 -55372400 - B1_Mus1 SINE Alu -74 74 13 3 1349 1726 310 83 58 chr4 100257720 100258433 -55371687 - Lx8 LINE L1 -2046 3659 2888 3 1349 570 241 6 100 chr4 100258473 100258653 -55371467 + RSINE1 SINE B4 3 165 0 3 1349 765 298 61 18 chr4 100258709 100258986 -55371134 + B4A SINE B4 4 292 0 3 1349 399 331 30 15 chr4 100259244 100259376 -55370744 + RSINE1 SINE B4 32 165 0 3 1349 204 40 0 0 chr4 100259396 100259421 -55370699 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1349 430 158 75 0 chr4 100260021 100260135 -55369985 - L1MC LINE L1 -3225 2921 2796 3 1349 249 230 10 20 chr4 100261413 100261515 -55368605 + CT-rich Low_complexity Low_complexity 5 105 0 3 1349 258 32 0 0 chr4 100262233 100262264 -55367856 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1349 486 0 0 0 chr4 100262271 100262325 -55367795 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1349 486 172 128 59 chr4 100262394 100262560 -55367560 + RMER17C LTR ERVK 85 275 -135 3 1349 1046 110 0 6 chr4 100262560 100262725 -55367395 + (GAA)n Simple_repeat Simple_repeat 3 166 0 3 1349 486 172 128 59 chr4 100262725 100262762 -55367358 + RMER17C LTR ERVK 276 302 -108 3 1349 237 265 44 0 chr4 100263075 100263143 -55366977 + PB1D10 SINE Alu 45 115 -2 3 1349 513 0 0 0 chr4 100263232 100263289 -55366831 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1349 315 0 0 0 chr4 100263289 100263323 -55366797 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1349 848 270 128 62 chr4 100264631 100265217 -55364903 + L1MA4 LINE L1 5643 6297 -3 3 1349 737 300 116 67 chr4 100265352 100265871 -55364249 + MLT2B3 LTR ERVL 1 544 -10 3 1349 693 325 134 28 chr4 100265973 100266022 -55364098 - MLT1H LTR MaLR 0 549 500 3 1349 2006 138 102 48 chr4 100266022 100266396 -55363724 + ORR1B1 LTR MaLR 1 394 0 3 1349 693 325 134 28 chr4 100266396 100266808 -55363312 - MLT1H LTR MaLR -50 499 39 3 1349 644 251 72 0 chr4 100266978 100267145 -55362975 + B3A SINE B2 2 180 -18 3 1349 776 137 13 20 chr4 100267440 100267589 -55362531 - URR1A DNA MER1_type 0 226 79 3 1349 212 304 38 29 chr4 100267619 100267724 -55362396 + L2a LINE L2 3297 3402 -24 3 1349 633 27 0 0 chr4 100267800 100267875 -55362245 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1349 246 62 0 0 chr4 100267875 100267906 -55362214 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1349 198 324 38 9 chr4 100268682 100268788 -55361332 + MIR SINE MIR 89 197 -65 3 1349 279 295 161 0 chr4 100269008 100269120 -55361000 + B1F SINE Alu 1 130 -19 3 1349 378 0 0 0 chr4 100269794 100269836 -55360284 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1350 656 219 116 0 chr4 100270097 100270243 -55359877 + RSINE1 SINE B4 3 165 0 3 1350 958 295 67 16 chr4 100271499 100271947 -55358173 - L1MA8 LINE L1 -2 6289 5819 3 1350 678 300 53 0 chr4 100271958 100272279 -55357841 - L1MA8 LINE L1 -520 5771 5420 3 1350 21 36 0 0 chr4 100272307 100272335 -55357785 + AT_rich Low_complexity Low_complexity 1 28 0 3 1350 667 261 52 26 chr4 100272389 100272582 -55357538 + B3A SINE B2 1 198 0 3 1350 271 292 179 13 chr4 100273184 100273340 -55356780 - MIRc SINE MIR -67 201 20 3 1350 1831 211 42 3 chr4 100273563 100273963 -55356157 + MTD LTR MaLR 2 411 -8 3 1350 735 263 67 0 chr4 100275079 100275273 -55354847 + ID_B1 SINE B4 17 223 -1 4 1350 1420 78 16 10 chr4 100275332 100275525 -55354595 + B2_Mm2 SINE B2 2 195 0 4 1350 642 156 0 22 chr4 100275525 100275663 -55354457 + GA-rich Low_complexity Low_complexity 4 138 0 4 1350 417 39 0 0 chr4 100275967 100276018 -55354102 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1350 43 20 0 0 chr4 100276020 100276070 -55354050 + AT_rich Low_complexity Low_complexity 1 50 0 4 1350 1098 194 14 5 chr4 100276966 100277178 -55352942 - B3 SINE B2 0 216 3 4 1350 1668 168 29 16 chr4 100277483 100277791 -55352329 - ORR1B2 LTR MaLR -55 312 1 4 1350 6451 160 74 35 chr4 100277791 100279160 -55350960 - ORR1B2-int LTR MaLR 0 1509 88 4 1350 1368 75 0 0 chr4 100279217 100279391 -55350729 + B2_Mm1a SINE B2 2 175 -18 4 1350 207 88 0 0 chr4 100279393 100279427 -55350693 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1350 656 136 0 0 chr4 100279429 100279539 -55350581 - ORR1B2-int LTR MaLR -1399 110 1 4 1350 505 108 0 12 chr4 100279541 100279625 -55350495 - ORR1B2 LTR MaLR -2 392 310 4 1350 1079 229 81 76 chr4 100279634 100280016 -55350104 + RMER13A LTR ERVK 9 392 -468 4 1350 341 0 0 0 chr4 100280017 100280058 -55350062 - ORR1B2 LTR MaLR 0 400 360 4 1350 4449 10 4 2 chr4 100280058 100280550 -55349570 + MT2_Mm LTR ERVL 1 493 0 4 1350 47708 16 14 1 chr4 100280550 100285842 -55344278 + MERVL-int LTR ERVL 1 5360 -125 4 1350 344 179 46 35 chr4 100285842 100285929 -55344191 + ORR1A3-int LTR MaLR 553 640 -1323 4 1350 321 0 0 0 chr4 100285929 100285967 -55344153 + MERVL-int LTR ERVL 5448 5485 0 4 1350 4449 10 4 2 chr4 100285967 100286459 -55343661 + MT2_Mm LTR ERVL 1 493 0 4 1350 2858 28 3 0 chr4 100286459 100286818 -55343302 - MTA_Mm LTR MaLR -36 360 1 4 1350 1388 152 61 15 chr4 100287021 100287282 -55342838 - ORR1B2 LTR MaLR -91 276 4 4 1350 326 336 0 35 chr4 100287290 100287404 -55342716 + RSINE1 SINE B4 43 152 -13 4 1350 372 94 0 0 chr4 100287418 100287471 -55342649 + (CTA)n Simple_repeat Simple_repeat 2 54 0 4 1350 224 320 64 70 chr4 100287497 100287826 -55342294 - L2 LINE L2 -550 2869 2543 4 1350 346 175 0 16 chr4 100290146 100290210 -55339910 + ID4 SINE ID 15 77 -6 4 1350 381 275 32 57 chr4 100290242 100290400 -55339720 + L1M5 LINE L1 2384 2537 -3609 4 1350 1124 129 113 5 chr4 100290659 100290854 -55339266 + B3 SINE B2 1 216 0 4 1350 225 234 53 11 chr4 100291030 100291125 -55338995 - MIR SINE MIR -79 183 85 4 1350 331 326 65 38 chr4 100291182 100291367 -55338753 + MER20 DNA MER1_type 26 215 -4 4 1350 203 119 0 67 chr4 100292228 100292273 -55337847 + (CAGGG)n Simple_repeat Simple_repeat 4 45 0 4 1350 814 325 68 57 chr4 100292817 100293290 -55336830 + MLT1H-int LTR MaLR 338 815 -594 4 1350 423 289 139 30 chr4 100293905 100294242 -55335878 - MLT1J1 LTR MaLR -47 397 16 4 1350 735 152 0 0 chr4 100294451 100294596 -55335524 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 1350 762 260 195 18 chr4 100295005 100295287 -55334833 - RMER15-int LTR ERVL -507 4492 4161 4 1350 1675 317 104 80 chr4 100295430 100295925 -55334195 - RMER15-int LTR ERVL -2772 2227 1702 4 1350 1979 157 102 0 chr4 100295925 100296268 -55333852 + ORR1C1 LTR MaLR 1 378 0 4 1350 1675 317 104 80 chr4 100296268 100296861 -55333259 - RMER15-int LTR ERVL -3298 1701 1113 4 1350 2037 274 44 21 chr4 100297353 100297972 -55332148 - RMER15-int LTR ERVL -3859 1140 508 4 1350 311 325 39 8 chr4 100298183 100298310 -55331810 - RMER15-int LTR ERVL -4668 331 201 4 1350 329 316 259 14 chr4 100298381 100298593 -55331527 - RMER15 LTR ERVL -16 559 296 4 1350 689 316 110 50 chr4 100298783 100298985 -55331135 - L1M2 LINE L1 -2444 3436 3240 4 1350 765 33 0 0 chr4 100298985 100299077 -55331043 + (TTC)n Simple_repeat Simple_repeat 3 94 0 4 1350 751 316 110 50 chr4 100299077 100299218 -55330902 - L1M2 LINE L1 -2641 3239 3040 4 1350 342 0 0 0 chr4 100299218 100299256 -55330864 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1350 845 168 0 0 chr4 100299260 100299403 -55330717 - B1_Mur4 SINE Alu -7 143 1 4 1350 751 316 110 50 chr4 100299403 100300222 -55329898 - L1M2 LINE L1 -3089 3054 2208 4 1350 1422 111 42 38 chr4 100300222 100300485 -55329635 + RMER6B LTR ERVK 2 265 -196 4 1350 400 279 71 139 chr4 100300502 100300932 -55329188 - RMER2 LTR ERV1 -23 544 1 4 1350 446 128 11 11 chr4 100300932 100301018 -55329102 + RMER6B LTR ERVK 262 347 -114 4 1350 2101 78 29 0 chr4 100301048 100301357 -55328763 - RLTR33 LTR ERVK -356 322 5 4 1350 630 107 19 0 chr4 100301533 100301636 -55328484 + RMER6B LTR ERVK 357 461 0 4 1350 182 37 37 0 chr4 100301782 100301809 -55328311 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 4 1350 557 282 63 33 chr4 100302009 100302375 -55327745 - L1M2 LINE L1 -3966 1911 1535 4 1350 22 0 0 0 chr4 100302555 100302577 -55327543 + AT_rich Low_complexity Low_complexity 1 22 0 4 1350 926 204 74 5 chr4 100303002 100303204 -55326916 + B3 SINE B2 1 216 0 4 1350 204 209 0 44 chr4 100303645 100303690 -55326430 + polypurine Low_complexity Low_complexity 3 45 0 4 1350 377 241 35 65 chr4 100304269 100304438 -55325682 + RNLTR23 LTR ERVK 479 642 0 4 1350 1330 241 13 44 chr4 100304614 100305004 -55325116 + RNERVK23-int LTR ERVK 171 548 -7669 4 1350 330 374 64 18 chr4 100305179 100305506 -55324614 + RNERVK23-int LTR ERVK 693 1034 -7183 4 1350 308 74 0 18 chr4 100305513 100305568 -55324552 - 4.5SRNA scRNA scRNA -37 57 4 4 1350 258 156 0 0 chr4 100306371 100306416 -55323704 + T-rich Low_complexity Low_complexity 1 45 0 4 1350 223 378 121 11 chr4 100306534 100306724 -55323396 - MIRb SINE MIR 0 268 58 4 1350 219 167 0 0 chr4 100306890 100306932 -55323188 + A-rich Low_complexity Low_complexity 1 42 0 4 1350 225 188 108 15 chr4 100307796 100307861 -55322259 - MIRc SINE MIR -116 152 82 4 1350 366 23 0 0 chr4 100308453 100308496 -55321624 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1350 227 330 19 10 chr4 100308809 100308913 -55321207 - MER3 DNA MER1_type -95 114 10 4 1350 1046 158 118 5 chr4 100309265 100309468 -55320652 + URR1A DNA MER1_type 1 226 0 4 1350 387 127 0 0 chr4 100310691 100310754 -55319366 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1350 619 247 10 98 chr4 100310757 100310950 -55319170 - B3 SINE B2 -32 184 9 4 1350 330 233 58 33 chr4 100311788 100311908 -55318212 - MIR SINE MIR -120 142 20 4 1350 240 330 35 9 chr4 100311963 100312076 -55318044 - MIRc SINE MIR -68 200 85 4 1350 270 316 8 50 chr4 100313090 100313169 -55316951 + MIR SINE MIR 33 107 -155 4 1350 1818 126 84 62 chr4 100313169 100313491 -55316629 + ORR1A4 LTR MaLR 1 329 0 4 1350 270 229 108 92 chr4 100313491 100313591 -55316529 + MIR SINE MIR 108 217 -59 4 1350 5579 126 60 11 chr4 100313601 100314514 -55315606 - RMER17B LTR ERVK 0 958 1 4 1350 218 197 118 66 chr4 100314586 100314662 -55315458 - PB1D7 SINE Alu 0 120 41 4 1350 269 309 131 7 chr4 100314777 100314914 -55315206 - MIRb SINE MIR -80 188 35 4 1350 236 316 120 19 chr4 100315681 100315839 -55314281 + MIR SINE MIR 60 233 -29 4 1350 312 299 103 0 chr4 100315965 100316072 -55314048 - MER63A DNA AcHobo -76 134 17 4 1350 2231 147 19 14 chr4 100316181 100316546 -55313574 - ORR1B2 LTR MaLR 0 367 1 4 1350 2015 172 47 3 chr4 100316914 100317098 -55313022 + MTD LTR MaLR 3 195 -224 4 1350 522 0 0 0 chr4 100317098 100317156 -55312964 + (TAA)n Simple_repeat Simple_repeat 3 60 0 4 1350 2015 172 47 3 chr4 100317156 100317355 -55312765 + MTD LTR MaLR 196 402 -17 4 1350 345 317 59 5 chr4 100318052 100318239 -55311881 - MIRb SINE MIR -66 202 6 4 1350 378 259 0 22 chr4 100318790 100318911 -55311209 + B1_Mur1 SINE Alu 5 147 -2 4 1350 3588 160 102 34 chr4 100320298 100320442 -55309678 - Lx9 LINE L1 -1 7643 7433 4 1350 195 42 0 0 chr4 100320442 100320466 -55309654 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1350 2176 90 36 61 chr4 100320466 100320796 -55309324 + ORR1A2 LTR MaLR 3 324 -3 4 1350 261 0 0 0 chr4 100320797 100320826 -55309294 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1350 3588 160 102 34 chr4 100320826 100321421 -55308699 - Lx9 LINE L1 -212 7432 6852 4 1350 704 242 46 10 chr4 100321530 100321716 -55308404 + B3A SINE B2 2 185 -10 4 1350 537 252 83 8 chr4 100321752 100321884 -55308236 - RSINE1 SINE B4 -21 144 3 4 1350 41697 14 2 6 chr4 100322637 100329405 -55300715 - L1Md_A LINE L1 0 6582 1 4 1350 661 109 32 52 chr4 100329837 100329992 -55300128 + RMER17B LTR ERVK 312 463 -495 4 1350 8364 32 12 6 chr4 100331211 100332237 -55297883 - L1Md_F2 LINE L1 -1 6581 5550 4 1350 7438 67 12 0 chr4 100332235 100333182 -55296938 + L1Md_F2 LINE L1 4601 5558 -325 4 1350 615 157 0 17 chr4 100334317 100334434 -55295686 - ORR1C1 LTR MaLR 0 378 264 4 1350 1304 181 25 171 chr4 100335048 100335528 -55294592 + RMER17C LTR ERVK 1 410 0 4 1350 338 83 0 0 chr4 100335726 100335774 -55294346 - HAL1-3A_ME LINE L1 -836 2022 1975 4 1350 565 158 12 0 chr4 100335774 100335948 -55294172 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1350 398 273 99 21 chr4 100335992 100336134 -55293986 - RSINE1 SINE B4 -12 153 1 4 1350 322 250 0 0 chr4 100336754 100336818 -55293302 + ID4_ SINE ID 1 64 -19 4 1350 220 316 26 13 chr4 100336894 100336971 -55293149 + ID_B1 SINE B4 77 154 -70 4 1350 1127 59 0 0 chr4 100337037 100337172 -55292948 + B1_Mus1 SINE Alu 1 135 -13 4 1350 414 0 0 0 chr4 100337174 100337220 -55292900 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1350 298 333 26 61 chr4 100337232 100337347 -55292773 + PB1D10 SINE Alu 10 120 -29 4 1350 1032 56 0 0 chr4 100337997 100338141 -55291979 + (GA)n Simple_repeat Simple_repeat 1 144 0 4 1350 229 200 0 39 chr4 100338404 100338482 -55291638 + GA-rich Low_complexity Low_complexity 5 79 0 4 1350 2356 77 48 0 chr4 100338659 100338970 -55291150 + ORR1A3 LTR MaLR 1 326 0 4 1350 198 325 111 0 chr4 100339245 100339371 -55290749 + MIR SINE MIR 36 175 -87 4 1350 1562 161 14 73 chr4 100339559 100339981 -55290139 + RMER17C LTR ERVK 1 397 -13 4 1350 702 136 0 0 chr4 100339981 100340099 -55290021 + (TC)n Simple_repeat Simple_repeat 2 119 0 4 1350 1123 88 0 7 chr4 100340115 100340263 -55289857 + B1_Mm SINE Alu 1 147 0 4 1350 639 160 17 0 chr4 100340834 100340953 -55289167 + ORR1C1 LTR MaLR 1 121 -257 4 1350 803 142 58 37 chr4 100340956 100341246 -55288874 + RMER17C LTR ERVK 1 410 0 4 1350 1267 193 31 19 chr4 100341246 100341502 -55288618 + ORR1C1 LTR MaLR 120 378 0 4 1350 2109 129 3 6 chr4 100341704 100342016 -55288104 + RLTR10E LTR ERVK 1 311 0 4 1350 434 209 71 18 chr4 100342016 100342128 -55287992 + MTD LTR MaLR 287 404 -15 4 1350 358 323 54 41 chr4 100342355 100342597 -55287523 + LTR16C LTR ERVL 74 318 -171 4 1350 775 289 46 12 chr4 100342739 100342998 -55287122 + B4 SINE B4 2 269 -23 4 1350 657 0 0 0 chr4 100342998 100343071 -55287049 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1350 363 197 132 0 chr4 100344735 100344811 -55285309 - PB1 SINE Alu -29 98 13 4 1350 243 280 40 13 chr4 100344743 100344819 -55285301 - B4A SINE B4 -125 167 90 5 1350 505 238 92 28 chr4 100344880 100345108 -55285012 - L1MA4 LINE L1 -291 6021 5783 5 1350 362 247 0 12 chr4 100345129 100345215 -55284905 + MLT1D LTR MaLR 77 161 -344 5 1350 392 37 19 0 chr4 100345957 100346011 -55284109 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 5 1350 426 273 180 29 chr4 100346331 100346576 -55283544 + B4A SINE B4 4 285 -7 5 1350 378 0 0 0 chr4 100347530 100347572 -55282548 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1350 21 0 0 0 chr4 100347921 100347942 -55282178 + AT_rich Low_complexity Low_complexity 1 21 0 5 1350 826 192 138 25 chr4 100348188 100348391 -55281729 - URR1A DNA MER1_type 0 226 1 5 1350 778 197 0 13 chr4 100348677 100348826 -55281294 + B1_Mur2 SINE Alu 1 147 -2 5 1350 2278 173 39 5 chr4 100348862 100349269 -55280851 + MTC LTR MaLR 1 421 0 5 1350 37792 28 4 7 chr4 100349362 100354538 -55275582 + L1Md_A LINE L1 441 5586 -297 5 1350 8486 40 0 0 chr4 100354538 100355534 -55274586 + L1Md_T LINE L1 5587 6582 0 5 1350 37792 22 4 0 chr4 100355534 100355555 -55274565 + L1Md_A LINE L1 5587 5613 -270 5 1350 518 342 13 0 chr4 100355818 100355970 -55274150 + RSINE1 SINE B4 12 165 0 5 1350 638 310 198 4 chr4 100357073 100357533 -55272587 + L1MB3 LINE L1 5618 6166 -17 5 1350 360 296 80 0 chr4 100357918 100358043 -55272077 - ID_B1 SINE B4 -10 214 80 5 1350 22 0 0 0 chr4 100358044 100358066 -55272054 + AT_rich Low_complexity Low_complexity 1 22 0 5 1350 712 317 25 0 chr4 100358072 100358274 -55271846 + B3 SINE B2 4 210 -6 5 1350 381 250 90 0 chr4 100358527 100358627 -55271493 - PB1D10 SINE Alu -7 110 2 5 1350 251 330 20 10 chr4 100358627 100358653 -55271467 - MT2B2 LTR ERVL -417 167 141 5 1350 456 305 98 84 chr4 100358762 100358936 -55271184 - B4 SINE B4 0 292 101 5 1350 1273 122 32 0 chr4 100358936 100359125 -55270995 - B2_Mm2 SINE B2 0 195 1 5 1350 456 305 98 84 chr4 100359125 100359236 -55270884 - B4 SINE B4 -192 100 3 5 1350 306 252 176 0 chr4 100359770 100359901 -55270219 - MER117 DNA MER1_type -32 165 12 5 1350 893 146 38 0 chr4 100359918 100360076 -55270044 + B2_Mm2 SINE B2 32 195 0 5 1350 774 32 0 0 chr4 100361841 100361934 -55268186 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 1350 843 319 26 98 chr4 100361934 100362650 -55267470 - L1_Mur3 LINE L1 -24 5856 5192 5 1350 336 48 0 0 chr4 100362715 100362757 -55267363 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1350 457 296 48 0 chr4 100362757 100362875 -55267245 - B1_Mur1 SINE Alu -10 139 16 5 1350 252 0 0 0 chr4 100363153 100363181 -55266939 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 5 1350 1051 130 0 18 chr4 100363181 100363346 -55266774 - B2_Mm2 SINE B2 -33 162 1 5 1350 1163 74 0 13 chr4 100363797 100363932 -55266188 + B1_Mus1 SINE Alu 1 135 -13 5 1350 205 51 25 25 chr4 100363932 100363972 -55266148 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1350 1163 74 0 13 chr4 100363972 100363986 -55266134 + B1_Mus1 SINE Alu 136 148 0 5 1350 578 346 54 33 chr4 100364215 100364457 -55265663 - MLT1F2 LTR MaLR -271 289 43 5 1350 214 331 112 17 chr4 100365323 100365501 -55264619 - MIRb SINE MIR -50 218 24 5 1350 314 308 65 0 chr4 100365742 100365849 -55264271 + MIR SINE MIR 66 179 -83 5 1350 484 219 43 17 chr4 100365871 100365987 -55264133 + B1F SINE Alu 1 119 -30 5 1350 244 338 64 32 chr4 100365987 100366027 -55264093 + B4A SINE B4 86 246 -46 5 1350 1413 281 43 0 chr4 100366140 100366495 -55263625 + Lx8 LINE L1 6955 7453 -191 5 1350 540 30 0 0 chr4 100366495 100366561 -55263559 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 5 1350 391 350 52 31 chr4 100366561 100366627 -55263493 + Lx8 LINE L1 7454 7516 -128 5 1350 260 272 0 21 chr4 100366644 100366738 -55263382 + Lx8 LINE L1 7380 7471 -2 5 1350 865 245 14 9 chr4 100366773 100366987 -55263133 + B3 SINE B2 1 215 -1 5 1350 1050 79 42 14 chr4 100367248 100367390 -55262730 + B1_Mus2 SINE Alu 2 147 0 5 1350 246 174 0 0 chr4 100367390 100367436 -55262684 + A-rich Low_complexity Low_complexity 1 46 0 5 1350 557 286 70 41 chr4 100367440 100367710 -55262410 + B4A SINE B4 15 292 0 5 1350 279 0 0 0 chr4 100367838 100367869 -55262251 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1350 442 270 125 9 chr4 100368180 100368404 -55261716 - L1M3 LINE L1 -921 5219 4970 5 1350 393 123 0 0 chr4 100368415 100368480 -55261640 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1350 5000 46 0 3 chr4 100368491 100369101 -55261019 + L1Md_F2 LINE L1 4979 5586 -297 5 1350 8590 29 3 2 chr4 100369102 100370096 -55260024 + L1Md_F2 LINE L1 5588 6582 0 5 1350 21 0 0 0 chr4 100370404 100370425 -55259695 + AT_rich Low_complexity Low_complexity 1 21 0 5 1350 681 294 29 10 chr4 100370427 100370633 -55259487 - B3 SINE B2 -6 210 1 5 1350 2597 292 115 19 chr4 100371019 100372030 -55258090 + Lx8 LINE L1 6331 7438 -35 5 1350 24 0 0 0 chr4 100372044 100372068 -55258052 + AT_rich Low_complexity Low_complexity 1 24 0 5 1350 684 185 162 34 chr4 100372078 100372257 -55257863 + B3 SINE B2 1 202 -14 5 1350 3113 35 53 3 chr4 100372301 100372678 -55257442 - MTA_Mm LTR MaLR 0 396 1 5 1350 1288 285 62 46 chr4 100372700 100373292 -55256828 - L1MB1 LINE L1 -58 6110 5509 5 1350 857 60 9 0 chr4 100373504 100373620 -55256500 + (TC)n Simple_repeat Simple_repeat 1 117 0 5 1350 752 141 26 45 chr4 100373865 100374021 -55256099 + URR1A DNA MER1_type 71 223 -3 5 1350 195 129 0 0 chr4 100374833 100374864 -55255256 + (GAA)n Simple_repeat Simple_repeat 2 32 0 5 1350 1644 170 43 0 chr4 100374864 100375164 -55254956 + MTD LTR MaLR 68 380 -39 5 1350 4049 64 4 11 chr4 100375211 100375735 -55254385 - L1Md_F2 LINE L1 0 6582 6063 5 1350 2272 189 31 27 chr4 100375747 100376258 -55253862 + RMER19C LTR ERVK 99 611 0 5 1350 426 220 0 74 chr4 100376270 100376378 -55253742 - RSINE1 SINE B4 -62 103 4 5 1350 329 155 61 15 chr4 100376548 100376679 -55253441 + (TA)n Simple_repeat Simple_repeat 1 137 0 5 1350 1027 242 9 0 chr4 100376925 100377136 -55252984 + B3 SINE B2 1 213 -3 5 1350 617 286 71 36 chr4 100377618 100377843 -55252277 + B4A SINE B4 4 236 -56 5 1350 202 239 34 11 chr4 100377903 100377992 -55252128 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1350 421 186 8 117 chr4 100378411 100378539 -55251581 + MT2B LTR ERVL 151 264 -337 5 1350 918 79 0 0 chr4 100378426 100378553 -55251567 + B1_Mus1 SINE Alu 1 127 -21 5 1350 198 0 0 0 chr4 100379425 100379447 -55250673 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 5 1350 600 240 46 7 chr4 100380533 100380684 -55249436 - B3A SINE B2 -15 183 27 5 1350 381 43 0 0 chr4 100380684 100380731 -55249389 + (T)n Simple_repeat Simple_repeat 1 47 0 5 1350 217 94 0 102 chr4 100380734 100380793 -55249327 + T-rich Low_complexity Low_complexity 2 54 0 5 1350 771 70 9 0 chr4 100380797 100380911 -55249209 - B1_Mus2 SINE Alu 0 147 33 5 1350 396 71 0 0 chr4 100380914 100380970 -55249150 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1350 421 200 135 10 chr4 100380972 100381068 -55249052 - B3 SINE B2 -10 206 99 5 1350 4334 145 66 32 chr4 100381286 100382061 -55248059 - Lx5 LINE L1 -383 6667 5867 5 1350 2939 156 42 20 chr4 100382215 100382764 -55247356 + RLTR31_Mm LTR ERVK 1 561 0 5 1350 181 170 170 0 chr4 100383220 100383273 -55246847 - MIRm SINE MIR -125 151 90 5 1350 216 0 0 0 chr4 100383525 100383549 -55246571 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1350 431 318 60 8 chr4 100383550 100383683 -55246437 - RSINE1 SINE B4 -12 153 14 5 1350 378 0 0 0 chr4 100384158 100384200 -55245920 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1350 782 213 61 41 chr4 100384855 100385051 -55245069 - B3 SINE B2 -16 200 1 5 1350 694 243 7 0 chr4 100385639 100385783 -55244337 + B1F2 SINE Alu 4 148 -1 5 1350 264 211 0 0 chr4 100385841 100385912 -55244208 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 1350 301 26 0 0 chr4 100386127 100386165 -55243955 + HAL1-3A_ME LINE L1 1972 2009 -849 5 1350 480 286 17 28 chr4 100386170 100386346 -55243774 + (CA)n Simple_repeat Simple_repeat 1 174 0 5 1350 311 228 35 35 chr4 100386386 100386527 -55243593 + (CA)n Simple_repeat Simple_repeat 1 141 0 5 1350 441 310 41 23 chr4 100386925 100387146 -55242974 + RMER15 LTR ERVL 347 571 -4 5 1350 210 154 0 0 chr4 100387929 100387968 -55242152 + A-rich Low_complexity Low_complexity 2 40 0 5 1350 1442 218 129 3 chr4 100388167 100388499 -55241621 - ORR1D1 LTR MaLR 0 374 1 5 1350 636 14 0 0 chr4 100388649 100388722 -55241398 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1350 473 320 70 12 chr4 100388837 100389096 -55241024 - MLT1F1 LTR MaLR 0 569 296 5 1350 370 339 86 0 chr4 100389120 100389294 -55240826 - MLT1F1 LTR MaLR -340 208 20 5 1350 23 33 0 0 chr4 100389495 100389525 -55240595 + AT_rich Low_complexity Low_complexity 1 30 0 5 1350 180 0 0 0 chr4 100390969 100390989 -55239131 + (TGG)n Simple_repeat Simple_repeat 2 21 0 5 1350 881 43 8 0 chr4 100390991 100391108 -55239012 + B1_Mus1 SINE Alu 19 136 -12 5 1350 21 0 0 0 chr4 100391242 100391263 -55238857 + GC_rich Low_complexity Low_complexity 1 21 0 5 1350 845 140 0 0 chr4 100391324 100391460 -55238660 - B1_Mus2 SINE Alu 0 147 12 5 1350 3584 60 7 0 chr4 100391460 100391893 -55238227 - RLTR10C LTR ERVK 0 436 1 5 1350 539 209 37 37 chr4 100392009 100392143 -55237977 + B1_Mur2 SINE Alu 5 138 -11 5 1350 205 27 53 26 chr4 100392143 100392181 -55237939 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1350 1285 289 93 9 chr4 100392254 100392832 -55237288 - L1MA4 LINE L1 -224 5959 5329 5 1350 432 293 99 31 chr4 100393098 100393260 -55236860 + ID_B1 SINE B4 51 223 -1 5 1350 324 0 0 0 chr4 100393484 100393520 -55236600 + (TTG)n Simple_repeat Simple_repeat 2 37 0 6 1350 1326 139 0 44 chr4 100393538 100393763 -55236357 + B3 SINE B2 1 215 -1 6 1350 325 307 126 45 chr4 100394126 100394324 -55235796 - MLT1N2 LTR MaLR -3 559 346 6 1350 2427 103 3 80 chr4 100396536 100396925 -55233195 - RLTR10D LTR ERVK 0 359 1 6 1350 456 268 171 11 chr4 100397242 100397423 -55232697 - B3 SINE B2 0 216 7 6 1350 427 263 24 63 chr4 100397699 100397825 -55232295 + RSINE1 SINE B4 45 165 0 6 1350 297 0 0 0 chr4 100397995 100398028 -55232092 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1350 222 37 0 0 chr4 100398083 100398110 -55232010 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1350 953 72 13 0 chr4 100398127 100398268 -55231852 - B2_Mm2 SINE B2 -41 157 2 6 1350 186 103 0 0 chr4 100399454 100399483 -55230637 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1350 1068 156 136 0 chr4 100399723 100399922 -55230198 - URR1A DNA MER1_type 0 226 1 6 1350 21 0 0 0 chr4 100400567 100400588 -55229532 + AT_rich Low_complexity Low_complexity 1 21 0 6 1351 1426 80 11 0 chr4 100401413 100401601 -55228519 + B2_Mm1t SINE B2 1 190 -3 6 1351 314 294 204 10 chr4 100401894 100402100 -55228020 - L1M5 LINE L1 -427 5752 5507 6 1351 407 301 140 40 chr4 100402110 100402432 -55227688 - MLT1C LTR MaLR -30 437 84 6 1351 571 173 6 23 chr4 100402554 100402683 -55227437 + B1_Mur2 SINE Alu 13 141 -8 6 1351 288 77 0 0 chr4 100402683 100402722 -55227398 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 6 1351 232 182 0 0 chr4 100402945 100402989 -55227131 + L1M4 LINE L1 2778 2821 -3325 6 1351 805 306 4 11 chr4 100403052 100403329 -55226791 - L1M2 LINE L1 -1922 4660 4386 6 1351 1435 112 68 26 chr4 100403327 100403592 -55226528 - L1_Mur2 LINE L1 -488 5389 5114 6 1351 307 324 53 69 chr4 100403584 100403846 -55226274 - L1_Rod LINE L1 -3461 2386 2129 6 1351 207 88 0 0 chr4 100403886 100403920 -55226200 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1351 253 307 0 0 chr4 100403926 100404001 -55226119 - U1 snRNA snRNA -90 75 1 6 1351 542 291 61 37 chr4 100404080 100404549 -55225571 - L1M2 LINE L1 -3977 2605 2106 6 1351 3205 104 2 35 chr4 100404549 100405038 -55225082 - Lx3A LINE L1 0 6981 6509 6 1351 471 320 83 38 chr4 100405038 100405208 -55224912 - L1M2 LINE L1 -4744 2105 1932 6 1351 233 322 35 0 chr4 100405209 100405296 -55224824 - ID_B1 SINE B4 -2 222 133 6 1351 206 329 7 40 chr4 100405938 100406090 -55224030 + GA-rich Low_complexity Low_complexity 3 149 0 6 1351 223 319 0 14 chr4 100406208 100406278 -55223842 + BC1_Mm scRNA scRNA 2 70 -82 6 1351 305 231 0 0 chr4 100406220 100406285 -55223835 + B4 SINE B4 14 78 -214 6 1351 432 240 43 85 chr4 100406272 100406411 -55223709 - B4 SINE B4 -139 153 21 6 1351 381 147 29 0 chr4 100406411 100406479 -55223641 + MTC LTR MaLR 1 70 -351 6 1351 1531 70 57 4 chr4 100406475 100406704 -55223416 + ORR1A1-int LTR MaLR 1552 1792 0 6 1351 2667 46 65 0 chr4 100406704 100407029 -55223091 + ORR1A1 LTR MaLR 1 346 0 6 1351 301 133 0 91 chr4 100407029 100407095 -55223025 + MTC LTR MaLR 362 421 0 6 1351 519 223 8 8 chr4 100407120 100407251 -55222869 + RCHARR1 DNA MER1_type 828 958 -16 6 1351 502 253 130 18 chr4 100407260 100407429 -55222691 + B3A SINE B2 5 192 -6 6 1351 703 350 50 76 chr4 100407580 100408134 -55221986 - MER44B DNA MER2_type -1 549 10 6 1351 638 256 0 0 chr4 100409328 100409465 -55220655 + B1_Mur1 SINE Alu 8 144 -5 6 1351 714 158 45 0 chr4 100409560 100409693 -55220427 + B1_Mus1 SINE Alu 6 144 -4 6 1351 1629 268 52 11 chr4 100409713 100410158 -55219962 - MT2A LTR ERVL -70 463 1 6 1351 495 226 226 0 chr4 100410256 100410393 -55219727 + B3A SINE B2 1 168 -30 6 1351 333 47 0 0 chr4 100410405 100410448 -55219672 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1351 1201 55 0 7 chr4 100410495 100410643 -55219477 + B1_Mm SINE Alu 1 147 0 6 1351 1104 188 14 33 chr4 100410675 100410865 -55219255 + B3 SINE B2 2 193 -23 6 1351 1975 179 89 15 chr4 100410865 100411256 -55218864 - MTC LTR MaLR -1 420 1 6 1351 1104 188 14 33 chr4 100411256 100411279 -55218841 + B3 SINE B2 194 211 -5 6 1351 3088 63 10 43 chr4 100411362 100411579 -55218541 - MTB LTR MaLR 0 400 196 6 1351 1436 65 54 0 chr4 100411579 100411764 -55218356 - B2_Mm2 SINE B2 0 195 1 6 1351 3088 63 10 43 chr4 100411764 100411960 -55218160 - MTB LTR MaLR -205 195 1 6 1351 619 269 112 14 chr4 100412141 100412356 -55217764 + L1MA4 LINE L1 5700 5935 -365 6 1351 437 281 15 23 chr4 100412507 100412638 -55217482 + RSINE1 SINE B4 36 165 0 6 1351 644 173 0 158 chr4 100412676 100412841 -55217279 + B1_Mur3 SINE Alu 1 139 -10 6 1351 330 26 0 0 chr4 100412841 100412880 -55217240 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1351 963 26 0 0 chr4 100412889 100413003 -55217117 + (GGGAGA)n Simple_repeat Simple_repeat 1 114 0 6 1351 230 239 0 0 chr4 100413123 100413169 -55216951 + ID4_ SINE ID 28 73 -10 6 1351 211 167 0 23 chr4 100413133 100413176 -55216944 + ID SINE ID 39 80 -144 6 1351 430 230 103 0 chr4 100413275 100413401 -55216719 - MLT-int LTR MaLR -63 1672 1534 6 1351 2862 163 6 51 chr4 100413401 100413952 -55216168 + RMER1B Other Other 4 1052 -14 6 1351 1050 54 15 0 chr4 100413988 100414118 -55216002 + B1_Mm SINE Alu 3 134 -13 6 1351 242 29 0 28 chr4 100414118 100414154 -55215966 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 1351 953 150 0 26 chr4 100414159 100414310 -55215810 + B1_Mur3 SINE Alu 2 148 -1 6 1351 238 175 0 0 chr4 100414322 100414362 -55215758 + B3A SINE B2 1 40 -158 6 1351 995 103 7 0 chr4 100414362 100414507 -55215613 + B2_Mm1t SINE B2 1 146 -47 6 1351 414 0 0 0 chr4 100414507 100414553 -55215567 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1351 216 227 23 0 chr4 100414559 100414603 -55215517 + B3A SINE B2 27 71 -127 6 1351 257 133 0 0 chr4 100414597 100414642 -55215478 - MTD LTR MaLR -92 327 283 6 1351 937 202 131 20 chr4 100414760 100415012 -55215108 + MTC LTR MaLR 11 290 -131 6 1351 407 174 0 11 chr4 100415016 100415103 -55215017 + GA-rich Low_complexity Low_complexity 4 89 0 6 1351 848 290 176 45 chr4 100415367 100415879 -55214241 + Tigger7 DNA MER2_type 28 606 -1885 6 1351 1046 221 117 54 chr4 100416222 100416556 -55213564 - ORR1E LTR MaLR 0 359 5 6 1351 253 254 15 0 chr4 100416633 100416700 -55213420 + MIR SINE MIR 161 228 -34 6 1351 764 237 55 5 chr4 100417207 100417409 -55212711 + B3A SINE B2 3 210 -6 6 1351 929 189 96 138 chr4 100417959 100418241 -55211879 - MT2A LTR ERVL -263 270 1 6 1351 542 250 7 28 chr4 100418965 100419109 -55211011 + B1F SINE Alu 7 147 -2 6 1351 346 155 0 0 chr4 100419115 100419173 -55210947 + MLT1H LTR MaLR 103 160 -389 6 1351 238 282 17 83 chr4 100419829 100419949 -55210171 + MIRb SINE MIR 35 146 -122 6 1351 216 206 0 181 chr4 100420113 100420196 -55209924 + L2c LINE L2 3312 3379 -8 6 1351 426 20 0 0 chr4 100420298 100420349 -55209771 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1351 766 277 31 0 chr4 100420852 100421047 -55209073 - ID_B1 SINE B4 -20 204 4 6 1351 566 52 0 0 chr4 100421180 100421257 -55208863 + B1_Mm SINE Alu 71 147 0 6 1351 361 279 284 16 chr4 100421272 100421585 -55208535 - L1MC4 LINE L1 -314 7728 7332 6 1351 233 53 0 50 chr4 100421673 100421713 -55208407 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1351 569 210 16 31 chr4 100422596 100422724 -55207396 - B1_Mur1 SINE Alu -18 131 6 6 1351 269 294 0 0 chr4 100422744 100422812 -55207308 - LTR85a LTR Gypsy? -631 71 4 6 1351 435 52 0 0 chr4 100423201 100423259 -55206861 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1351 1753 209 46 0 chr4 100423521 100423870 -55206250 + ORR1D1 LTR MaLR 1 365 -9 6 1351 2103 133 113 8 chr4 100425241 100425596 -55204524 - ORR1B1 LTR MaLR 0 394 3 6 1351 620 219 49 49 chr4 100425884 100425924 -55204196 + URR1B DNA MER1_type 1 36 -189 6 1351 2193 94 28 9 chr4 100425924 100426245 -55203875 - ORR1A4 LTR MaLR 0 329 3 6 1351 620 219 49 49 chr4 100426245 100426348 -55203772 + URR1B DNA MER1_type 37 144 -81 6 1351 404 122 0 12 chr4 100426357 100426440 -55203680 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 6 1351 1770 187 111 8 chr4 100426691 100427069 -55203051 + MTD LTR MaLR 1 417 -2 6 1351 2019 160 45 91 chr4 100427172 100427613 -55202507 + MTC LTR MaLR 1 421 0 6 1351 538 254 99 60 chr4 100427701 100427919 -55202201 + RLTR20D LTR ERVK 4 252 -326 6 1351 424 292 16 40 chr4 100428766 100428891 -55201229 + PB1 SINE Alu 6 127 0 6 1351 189 0 0 0 chr4 100428894 100428915 -55201205 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1351 829 151 0 52 chr4 100430083 100430237 -55199883 - B1_Mur4 SINE Alu -1 149 4 6 1351 499 311 26 78 chr4 100430416 100430428 -55199692 - RMER15 LTR ERVL 0 575 564 6 1351 1456 74 21 0 chr4 100430428 100430617 -55199503 - B2_Mm2 SINE B2 0 195 3 6 1351 499 311 26 78 chr4 100430617 100430834 -55199286 - RMER15 LTR ERVL -12 563 358 6 1351 298 364 21 0 chr4 100430883 100431023 -55199097 - Lx8 LINE L1 -300 7173 7031 6 1351 329 293 34 4 chr4 100431708 100431815 -55198305 + B1F1 SINE Alu 13 120 0 6 1351 1241 70 22 50 chr4 100431817 100431975 -55198145 + B2_Mm2 SINE B2 1 162 -33 6 1351 333 0 0 0 chr4 100431975 100432012 -55198108 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6 1351 1241 70 22 50 chr4 100432012 100432034 -55198086 + B2_Mm2 SINE B2 163 176 -19 6 1351 428 266 0 66 chr4 100432324 100432461 -55197659 + L2c LINE L2 3260 3387 0 6 1351 202 297 105 48 chr4 100432764 100432888 -55197232 + MIRc SINE MIR 63 193 -75 6 1351 276 269 219 5 chr4 100432931 100433118 -55197002 - LTR33A LTR ERVL -6 514 288 6 1351 477 344 13 48 chr4 100433248 100433477 -55196643 + B4A SINE B4 2 222 -70 6 1351 214 171 0 0 chr4 100433498 100433539 -55196581 + GA-rich Low_complexity Low_complexity 2 42 0 7 1351 315 0 0 0 chr4 100433601 100433636 -55196484 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1351 1757 179 27 27 chr4 100433756 100434128 -55195992 - ORR1D1 LTR MaLR 0 374 3 7 1351 237 33 0 0 chr4 100434529 100434559 -55195561 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1351 1220 35 7 0 chr4 100434621 100434765 -55195355 + B1_Mus2 SINE Alu 2 146 -1 7 1351 226 322 22 22 chr4 100434794 100434886 -55195234 - MLT1J LTR MaLR -336 176 85 7 1351 245 366 0 0 chr4 100435206 100435288 -55194832 + MIR SINE MIR 111 192 -70 7 1351 687 267 42 11 chr4 100435503 100435692 -55194428 + B3A SINE B2 2 196 -2 7 1351 1194 22 0 0 chr4 100436999 100437136 -55192984 + B1_Mus2 SINE Alu 2 138 -9 7 1351 200 59 29 0 chr4 100437136 100437170 -55192950 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1351 819 155 21 21 chr4 100437333 100437478 -55192642 + B1_Mus2 SINE Alu 1 145 -2 7 1351 378 277 37 10 chr4 100438320 100438481 -55191639 + MIRb SINE MIR 88 256 -6 7 1351 785 235 78 112 chr4 100438966 100439229 -55190891 + ORR1D2 LTR MaLR 5 272 -98 7 1351 675 223 7 33 chr4 100439229 100439382 -55190738 + B1_Mur2 SINE Alu 1 149 0 7 1351 785 235 78 112 chr4 100439382 100439449 -55190671 + ORR1D2 LTR MaLR 273 324 -46 7 1351 342 0 0 0 chr4 100439589 100439627 -55190493 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1351 450 0 0 0 chr4 100439627 100439676 -55190444 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1351 893 164 0 0 chr4 100439677 100439805 -55190315 - B1_Mur3 SINE Alu -19 130 3 7 1351 1274 215 77 13 chr4 100439908 100440219 -55189901 - ORR1D1 LTR MaLR -13 361 31 7 1351 1078 70 21 0 chr4 100440313 100440455 -55189665 + B1_Mus1 SINE Alu 3 147 -1 7 1351 228 135 0 0 chr4 100440457 100440494 -55189626 + (GGA)n Simple_repeat Simple_repeat 3 39 0 7 1351 765 135 37 0 chr4 100440493 100440656 -55189464 + GA-rich Low_complexity Low_complexity 3 171 0 7 1351 271 0 0 29 chr4 100440656 100440691 -55189429 + (GAA)n Simple_repeat Simple_repeat 1 34 0 7 1351 246 62 0 0 chr4 100440759 100440791 -55189329 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 7 1351 1004 0 0 8 chr4 100440819 100440936 -55189184 + (GAA)n Simple_repeat Simple_repeat 3 118 0 7 1351 237 65 0 0 chr4 100441004 100441035 -55189085 + (TGGGGG)n Simple_repeat Simple_repeat 2 32 0 7 1351 1196 272 74 52 chr4 100441035 100441535 -55188585 + LTR40a LTR ERVL 9 519 0 7 1351 698 128 0 8 chr4 100441610 100441728 -55188392 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 7 1351 972 205 73 5 chr4 100441765 100441956 -55188164 - B3 SINE B2 -11 205 2 7 1351 201 273 60 120 chr4 100441957 100442057 -55188063 + L2c LINE L2 3285 3378 -9 7 1351 627 26 0 0 chr4 100442125 100442202 -55187918 + (GA)n Simple_repeat Simple_repeat 2 78 0 7 1351 759 197 117 20 chr4 100442218 100442415 -55187705 + B3 SINE B2 1 216 0 7 1351 200 333 69 29 chr4 100442515 100442617 -55187503 + MIR SINE MIR 35 140 -122 7 1351 910 124 12 6 chr4 100443214 100443376 -55186744 + (TTCC)n Simple_repeat Simple_repeat 4 166 0 7 1351 260 53 26 0 chr4 100443856 100443894 -55186226 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 7 1351 761 235 43 19 chr4 100443895 100444103 -55186017 - ID_B1 SINE B4 -4 220 8 7 1351 342 0 0 0 chr4 100444143 100444181 -55185939 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1351 189 274 118 40 chr4 100444183 100444259 -55185861 - L2b LINE L2 -17 3358 3277 7 1351 323 278 14 20 chr4 100444931 100444950 -55185170 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1351 297 0 0 0 chr4 100444950 100444983 -55185137 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1351 323 278 14 20 chr4 100444983 100445110 -55185010 + (TA)n Simple_repeat Simple_repeat 1 125 0 7 1351 381 162 0 0 chr4 100445123 100445191 -55184929 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1351 207 0 0 0 chr4 100445191 100445214 -55184906 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1351 319 143 41 41 chr4 100445597 100445670 -55184450 + MTD LTR MaLR 1 73 -348 7 1351 395 148 54 54 chr4 100445697 100445790 -55184330 - B1_Mur4 SINE Alu -8 142 50 7 1351 1647 31 0 15 chr4 100445811 100446006 -55184114 - B2_Mm1a SINE B2 0 193 2 7 1351 1233 213 123 30 chr4 100446006 100446331 -55183789 + MTD LTR MaLR 47 403 -16 7 1351 1377 86 0 31 chr4 100446364 100446557 -55183563 - B2_Mm2 SINE B2 -8 187 1 7 1351 765 257 89 39 chr4 100447092 100447351 -55182769 - B4A SINE B4 -19 273 2 7 1351 1051 108 0 20 chr4 100447382 100447533 -55182587 - B1_Mus1 SINE Alu 0 148 1 7 1351 1544 221 16 27 chr4 100447660 100447886 -55182234 - ORR1D1 LTR MaLR 0 374 157 7 1351 1388 93 6 0 chr4 100447886 100448069 -55182051 - B2_Mm1t SINE B2 -5 188 5 7 1351 1544 221 16 27 chr4 100448069 100448210 -55181910 - ORR1D1 LTR MaLR -218 156 12 7 1351 557 133 10 0 chr4 100448511 100448609 -55181511 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1351 281 310 56 33 chr4 100448615 100448795 -55181325 + MIRb SINE MIR 19 202 -66 7 1351 22 35 0 0 chr4 100449514 100449543 -55180577 + GC_rich Low_complexity Low_complexity 1 29 0 7 1351 23 54 0 0 chr4 100449572 100449609 -55180511 + GC_rich Low_complexity Low_complexity 1 37 0 7 1351 205 167 28 0 chr4 100451087 100451123 -55178997 + GA-rich Low_complexity Low_complexity 1 37 0 7 1351 306 167 0 0 chr4 100452680 100452764 -55177356 + T-rich Low_complexity Low_complexity 1 84 0 7 1351 1333 145 4 39 chr4 100453310 100453540 -55176580 + URR1B DNA MER1_type 2 223 -2 7 1351 504 0 0 0 chr4 100454652 100454708 -55175412 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1351 498 33 0 0 chr4 100456307 100456367 -55173753 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1351 251 266 8 92 chr4 100456841 100456961 -55173159 - MER102b DNA MER1_type -215 126 17 7 1351 477 0 0 0 chr4 100457043 100457096 -55173024 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1351 397 281 88 7 chr4 100457096 100457232 -55172888 - B3A SINE B2 -17 181 35 7 1351 194 239 0 0 chr4 100457348 100457394 -55172726 - L2a LINE L2 -14 3412 3367 7 1351 1210 27 0 14 chr4 100458512 100458660 -55171460 + B1_Mm SINE Alu 1 146 -1 7 1351 885 89 58 29 chr4 100458815 100458954 -55171166 - B1_Mur3 SINE Alu -6 143 1 7 1351 374 259 0 0 chr4 100459054 100459135 -55170985 + ID4 SINE ID 1 81 -2 7 1351 28 0 0 0 chr4 100459751 100459779 -55170341 + AT_rich Low_complexity Low_complexity 1 28 0 7 1351 627 14 0 0 chr4 100460216 100460288 -55169832 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 7 1351 354 234 0 11 chr4 100461074 100461169 -55168951 + ID_B1 SINE B4 77 170 -54 7 1351 21 0 0 0 chr4 100461182 100461203 -55168917 + AT_rich Low_complexity Low_complexity 1 21 0 7 1351 211 230 0 0 chr4 100461767 100461820 -55168300 - L2b LINE L2 -4 3422 3329 7 1351 57 71 0 0 chr4 100462315 100462428 -55167692 + AT_rich Low_complexity Low_complexity 1 113 0 7 1351 422 189 33 0 chr4 100462547 100462637 -55167483 - RSINE1 SINE B4 -70 95 3 7 1351 774 119 8 8 chr4 100463472 100463591 -55166529 + PB1D9 SINE Alu 2 120 0 7 1351 479 228 56 16 chr4 100463846 100463971 -55166149 + B1F1 SINE Alu 8 137 -12 7 1351 302 321 150 44 chr4 100464005 100464279 -55165841 + Tigger5 DNA MER2_type 6 308 -2098 7 1351 25 0 0 0 chr4 100464714 100464739 -55165381 + AT_rich Low_complexity Low_complexity 1 25 0 7 1351 670 216 210 30 chr4 100465360 100465622 -55164498 - MER2 DNA MER2_type -20 325 17 7 1351 302 343 20 20 chr4 100466544 100466581 -55163539 + ID SINE ID 49 85 -139 7 1351 313 203 29 59 chr4 100466581 100466649 -55163471 + PB1D7 SINE Alu 3 68 -52 7 1351 513 257 0 0 chr4 100466662 100466771 -55163349 + B3A SINE B2 1 109 -89 7 1351 258 32 0 0 chr4 100466807 100466838 -55163282 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1351 1030 284 74 113 chr4 100466887 100467284 -55162836 + MTE-int LTR MaLR 446 1095 -485 7 1351 333 226 60 0 chr4 100467691 100467958 -55162162 + (TTAG)n Simple_repeat Simple_repeat 1 283 0 7 1351 871 188 160 0 chr4 100469054 100469235 -55160885 + B3 SINE B2 1 210 -6 7 1351 187 301 47 35 chr4 100470229 100470315 -55159805 + MIRb SINE MIR 94 180 -88 7 1351 216 0 0 0 chr4 100471964 100471988 -55158132 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1351 1574 52 0 15 chr4 100472863 100473058 -55157062 + B2_Mm1a SINE B2 2 193 0 7 1351 647 110 2 2 chr4 100473066 100473174 -55156946 + B1_Mus1 SINE Alu 2 109 -11 7 1351 615 271 54 43 chr4 100473204 100473389 -55156731 - B3A SINE B2 -9 207 21 7 1351 216 0 0 0 chr4 100473399 100473423 -55156697 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1351 583 268 12 47 chr4 100473425 100473597 -55156523 - B3A SINE B2 -32 166 1 7 1351 1301 291 145 37 chr4 100474102 100475156 -55154964 - Lx8 LINE L1 -832 6641 5482 7 1351 1655 31 0 5 chr4 100475156 100475349 -55154771 - B2_Mm1a SINE B2 0 193 2 7 1351 953 303 72 29 chr4 100475349 100475435 -55154685 - Lx8 LINE L1 -399 5481 5397 7 1351 434 296 0 9 chr4 100475434 100475550 -55154570 + Lx8 LINE L1 6681 6795 -678 7 1351 546 243 50 44 chr4 100475567 100475726 -55154394 + B3 SINE B2 7 166 -50 7 1351 381 43 0 0 chr4 100475727 100475774 -55154346 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1351 1038 283 88 86 chr4 100475819 100476367 -55153753 + Lx8 LINE L1 6807 7355 -118 7 1351 537 221 0 9 chr4 100476368 100476473 -55153647 + B3 SINE B2 3 106 -110 7 1351 703 255 81 87 chr4 100478081 100478438 -55151682 + ORR1E LTR MaLR 3 357 -2 7 1351 1042 117 6 6 chr4 100478814 100478994 -55151126 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1351 379 263 52 9 chr4 100479078 100479193 -55150927 - B1F1 SINE Alu 0 149 30 7 1351 664 251 40 6 chr4 100479453 100479629 -55150491 - B3A SINE B2 -16 182 1 8 1351 3894 141 97 6 chr4 100480011 100480704 -55149416 - RMER6A LTR ERVK 0 756 1 8 1351 989 205 19 24 chr4 100480763 100480973 -55149147 + B3 SINE B2 5 213 -3 8 1351 313 285 124 0 chr4 100481040 100481177 -55148943 + Charlie4a DNA MER1_type 149 302 -206 8 1351 958 221 7 6 chr4 100481182 100481396 -55148724 - B3A SINE B2 0 216 1 8 1351 553 249 72 77 chr4 100481478 100481700 -55148420 - ID_B1 SINE B4 -1 223 3 8 1351 540 0 0 0 chr4 100481982 100482042 -55148078 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1351 1000 221 5 14 chr4 100482196 100482403 -55147717 + B3 SINE B2 1 205 -11 8 1351 210 71 0 0 chr4 100482875 100482903 -55147217 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1351 231 154 192 0 chr4 100483242 100483294 -55146826 + ID4_ SINE ID 3 64 -19 8 1351 252 0 0 0 chr4 100483963 100483991 -55146129 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1351 21 0 0 0 chr4 100484209 100484230 -55145890 + AT_rich Low_complexity Low_complexity 1 21 0 8 1351 878 61 0 0 chr4 100485114 100485229 -55144891 - B1_Mus1 SINE Alu -11 137 23 8 1351 333 0 0 0 chr4 100486192 100486229 -55143891 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1351 401 274 26 9 chr4 100486231 100486345 -55143775 - B3A SINE B2 -82 116 1 8 1351 186 71 0 0 chr4 100486357 100486385 -55143735 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1351 704 178 319 0 chr4 100487045 100487208 -55142912 + B3 SINE B2 1 215 -1 8 1351 470 243 0 104 chr4 100487332 100487447 -55142673 + B4 SINE B4 111 213 -79 8 1351 577 199 18 57 chr4 100488664 100488836 -55141284 - B3 SINE B2 -21 174 28 8 1351 957 131 0 0 chr4 100489265 100489418 -55140702 + (TTCC)n Simple_repeat Simple_repeat 4 156 0 8 1351 1201 29 0 0 chr4 100489420 100489558 -55140562 - B1_Mus1 SINE Alu -6 142 5 8 1351 425 219 313 12 chr4 100489581 100489747 -55140373 - B3 SINE B2 0 216 1 8 1351 1471 59 11 5 chr4 100489768 100489954 -55140166 - B2_Mm2 SINE B2 -6 189 3 8 1351 182 231 45 0 chr4 100490143 100490193 -55139927 + MIRc SINE MIR 111 165 -103 8 1351 276 305 0 24 chr4 100490542 100490626 -55139494 - B4A SINE B4 -21 271 190 8 1351 299 214 14 28 chr4 100490637 100490709 -55139411 - B4A SINE B4 -207 85 15 8 1351 21 0 0 0 chr4 100491415 100491436 -55138684 + AT_rich Low_complexity Low_complexity 1 21 0 8 1351 429 166 27 14 chr4 100491845 100491992 -55138128 + (CA)n Simple_repeat Simple_repeat 1 149 0 8 1351 416 140 37 0 chr4 100492064 100492171 -55137949 + (CA)n Simple_repeat Simple_repeat 1 111 0 8 1351 207 171 40 0 chr4 100492235 100492311 -55137809 + (CA)n Simple_repeat Simple_repeat 1 79 0 8 1351 311 95 129 0 chr4 100492409 100492497 -55137623 + B1_Mus2 SINE Alu 6 118 -2 8 1351 1966 157 11 14 chr4 100493995 100494356 -55135764 + ORR1B2 LTR MaLR 8 367 0 8 1351 662 153 89 0 chr4 100496919 100497043 -55133077 + B1_Mur3 SINE Alu 4 138 -11 8 1351 739 235 11 16 chr4 100497497 100497679 -55132441 - B3 SINE B2 -8 208 28 8 1351 1348 70 36 31 chr4 100497696 100497889 -55132231 - B2_Mm2 SINE B2 -1 194 1 8 1351 254 257 55 37 chr4 100497947 100498056 -55132064 + L2b LINE L2 3253 3363 -12 8 1351 249 266 38 12 chr4 100498100 100498180 -55131940 - MIRb SINE MIR -41 227 146 8 1351 1613 147 101 9 chr4 100498835 100499152 -55130968 - ORR1B1 LTR MaLR -8 386 41 8 1351 489 17 0 0 chr4 100499451 100499509 -55130611 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 8 1351 201 74 0 0 chr4 100499510 100499537 -55130583 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1351 24 32 0 0 chr4 100501846 100501877 -55128243 + AT_rich Low_complexity Low_complexity 1 31 0 1 1351 22 0 0 0 chr4 100501916 100501938 -55128182 + AT_rich Low_complexity Low_complexity 1 22 0 2 1351 624 341 96 50 chr4 100502037 100502701 -55127419 - LTR82A LTR ERVL -50 822 128 3 1351 332 216 298 26 chr4 100502931 100503045 -55127075 + RSINE1 SINE B4 2 146 -19 4 1351 518 290 84 58 chr4 100503363 100503671 -55126449 - MLT1E3 LTR MaLR -15 609 294 5 1351 474 228 39 16 chr4 100503799 100503928 -55126192 + B1F2 SINE Alu 3 134 -15 6 1351 7378 107 32 4 chr4 100504055 100505667 -55124453 + Lx LINE L1 5002 6654 0 7 1351 441 0 0 0 chr4 100505682 100505731 -55124389 + (TAA)n Simple_repeat Simple_repeat 1 49 0 8 1351 282 56 0 0 chr4 100506269 100506305 -55123815 + (TATG)n Simple_repeat Simple_repeat 3 38 0 9 1351 626 230 14 0 chr4 100506311 100506450 -55123670 - B3A SINE B2 -55 143 3 1 1351 184 139 28 0 chr4 100506487 100506523 -55123597 - MIRc SINE MIR -18 250 214 1 1351 235 246 49 0 chr4 100506557 100506618 -55123502 - L1ME3 LINE L1 -24 6138 6075 1 1351 396 0 0 0 chr4 100506741 100506785 -55123335 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1351 305 256 12 0 chr4 100507354 100507436 -55122684 - L1MB8 LINE L1 -9 6169 6087 1 1351 711 302 79 26 chr4 100507504 100507885 -55122235 - L1MB8 LINE L1 -200 5978 5578 1 1351 1195 204 111 23 chr4 100507911 100508253 -55121867 - MTD LTR MaLR -2 417 46 1 1351 596 273 22 67 chr4 100508263 100508487 -55121633 - L1MB8 LINE L1 -626 5558 5345 1 1351 476 281 74 12 chr4 100508536 100508698 -55121422 - B3A SINE B2 -26 172 1 1 1351 364 260 125 20 chr4 100508708 100508908 -55121212 - L1MB8 LINE L1 -813 5333 5113 1 1351 552 193 16 16 chr4 100509129 100509250 -55120870 - B1_Mur1 SINE Alu 0 149 29 1 1351 294 29 0 0 chr4 100510336 100510371 -55119749 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1351 519 17 0 0 chr4 100510371 100510430 -55119690 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1351 756 52 0 0 chr4 100510617 100510714 -55119406 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 2 1351 227 259 37 0 chr4 100510760 100510814 -55119306 - PB1 SINE Alu -53 74 19 2 1351 6030 120 19 7 chr4 100511115 100512199 -55117921 - Lx4A LINE L1 -527 6531 5428 2 1351 3351 132 19 4 chr4 100512200 100512715 -55117405 + Lx4A LINE L1 6534 7056 -2 2 1351 514 257 104 0 chr4 100512743 100512887 -55117233 + B3A SINE B2 8 166 -32 2 1351 207 0 0 0 chr4 100512897 100512920 -55117200 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1351 450 0 0 0 chr4 100513046 100513096 -55117024 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2 1351 198 0 0 0 chr4 100514301 100514323 -55115797 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1351 218 136 45 0 chr4 100514794 100514838 -55115282 + G-rich Low_complexity Low_complexity 2 47 0 2 1351 1253 111 39 0 chr4 100514901 100515081 -55115039 + B2_Mm2 SINE B2 2 188 -7 2 1351 240 241 0 0 chr4 100517945 100518024 -55112096 + T-rich Low_complexity Low_complexity 1 79 0 2 1351 821 170 37 0 chr4 100518031 100518166 -55111954 - B1_Mur3 SINE Alu -7 142 3 3 1351 495 0 0 0 chr4 100519007 100519062 -55111058 + (CCA)n Simple_repeat Simple_repeat 2 56 0 3 1351 234 301 112 0 chr4 100519664 100519807 -55110313 - L1MB7 LINE L1 -18 6166 6008 3 1351 180 161 0 0 chr4 100521627 100521658 -55108462 - MIRb SINE MIR -8 260 230 3 1351 22 35 0 0 chr4 100521806 100521835 -55108285 + AT_rich Low_complexity Low_complexity 1 29 0 3 1351 471 256 25 8 chr4 100522225 100522343 -55107777 + PB1D9 SINE Alu 1 120 0 3 1351 930 186 85 25 chr4 100522352 100522551 -55107569 + B3 SINE B2 3 213 -3 3 1351 31 26 0 0 chr4 100522551 100522589 -55107531 + AT_rich Low_complexity Low_complexity 1 38 0 3 1351 300 268 0 14 chr4 100522593 100522665 -55107455 + ID4 SINE ID 3 73 -10 3 1351 404 71 0 0 chr4 100522796 100522852 -55107268 - ORR1A4 LTR MaLR 0 329 274 3 1351 1871 150 9 12 chr4 100523685 100524023 -55106097 - ORR1B1 LTR MaLR -57 337 1 4 1351 403 242 40 0 chr4 100524067 100524166 -55105954 - PB1D10 SINE Alu -6 111 9 4 1351 335 263 20 40 chr4 100524081 100524180 -55105940 - ID_B1 SINE B4 -48 176 80 4 1351 461 283 0 28 chr4 100524555 100524664 -55105456 + RSINE1 SINE B4 31 136 -29 4 1351 30 0 0 0 chr4 100524672 100524702 -55105418 + AT_rich Low_complexity Low_complexity 1 30 0 4 1351 210 143 0 0 chr4 100525880 100525915 -55104205 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 4 1351 288 0 0 0 chr4 100526386 100526418 -55103702 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1351 212 125 0 40 chr4 100526810 100526860 -55103260 + (TGG)n Simple_repeat Simple_repeat 1 48 0 4 1351 198 0 0 0 chr4 100526949 100526971 -55103149 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1351 257 238 152 24 chr4 100527172 100527297 -55102823 + L1ME4a LINE L1 5969 6109 -15 4 1351 214 174 0 42 chr4 100528417 100528465 -55101655 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1351 288 0 0 0 chr4 100528515 100528547 -55101573 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1351 767 282 69 4 chr4 100531130 100531376 -55098744 + B4 SINE B4 31 292 0 5 1351 198 0 0 0 chr4 100531467 100531489 -55098631 + (CTAA)n Simple_repeat Simple_repeat 3 24 0 5 1351 339 332 57 50 chr4 100531514 100531955 -55098165 - L1ME3A LINE L1 -137 6036 5593 5 1351 24 32 0 0 chr4 100532065 100532096 -55098024 + AT_rich Low_complexity Low_complexity 1 31 0 5 1352 782 127 25 112 chr4 100532264 100532424 -55097696 + B1_Mus2 SINE Alu 1 146 -1 5 1352 185 65 32 0 chr4 100532431 100532462 -55097658 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1352 1381 70 32 5 chr4 100532654 100532841 -55097279 - B2_Mm1a SINE B2 0 193 2 5 1352 405 0 0 0 chr4 100532994 100533039 -55097081 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1352 219 297 179 18 chr4 100533305 100533473 -55096647 + MIRc SINE MIR 23 217 -51 6 1352 901 121 0 64 chr4 100534103 100534244 -55095876 + B1_Mus1 SINE Alu 4 135 -13 6 1352 1471 67 0 30 chr4 100534385 100534585 -55095535 + B2_Mm2 SINE B2 2 195 0 6 1352 975 152 0 0 chr4 100534900 100535078 -55095042 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1352 272 267 83 0 chr4 100535109 100535169 -55094951 - ID4_ SINE ID -16 67 3 6 1352 212 310 141 0 chr4 100535439 100535510 -55094610 + MIR SINE MIR 18 98 -164 6 1352 287 230 321 15 chr4 100535645 100535782 -55094338 + B3A SINE B2 2 180 -18 6 1352 252 0 0 0 chr4 100535790 100535818 -55094302 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1352 321 248 115 29 chr4 100535876 100535980 -55094140 + B1F SINE Alu 36 148 -1 6 1352 562 236 0 0 chr4 100536132 100536242 -55093878 + RSINE1 SINE B4 3 112 -53 6 1352 315 0 0 0 chr4 100536289 100536324 -55093796 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 1352 181 258 158 61 chr4 100537901 100538066 -55092054 + MIRb SINE MIR 14 194 -74 7 1352 194 91 30 0 chr4 100538169 100538202 -55091918 + (CCCCCG)n Simple_repeat Simple_repeat 5 38 0 7 1352 226 271 114 0 chr4 100539775 100539845 -55090275 + B3A SINE B2 1 78 -120 7 1352 215 322 87 47 chr4 100539845 100539902 -55090218 + RSINE1 SINE B4 2 133 -32 7 1352 25 0 0 0 chr4 100539944 100539969 -55090151 + AT_rich Low_complexity Low_complexity 1 25 0 7 1352 21 0 0 0 chr4 100540224 100540245 -55089875 + AT_rich Low_complexity Low_complexity 1 21 0 7 1352 512 128 32 0 chr4 100540306 100540400 -55089720 - B1_Mur1 SINE Alu -23 126 30 7 1352 267 188 60 36 chr4 100540329 100540412 -55089708 - MT2B LTR ERVL -346 255 171 7 1352 266 262 8 151 chr4 100540331 100540415 -55089705 - RLTR25B LTR ERVK -530 498 427 7 1352 2004 155 97 30 chr4 100540415 100540808 -55089312 - MTC LTR MaLR -2 419 1 8 1352 266 262 8 151 chr4 100540808 100540849 -55089271 - RLTR25B LTR ERVK -602 426 391 7 1352 681 262 0 50 chr4 100542084 100542285 -55087835 - B3A SINE B2 -7 191 1 8 1352 867 232 113 0 chr4 100542317 100542502 -55087618 - B3 SINE B2 -10 206 1 8 1352 807 294 14 0 chr4 100542907 100543121 -55086999 - ID_B1 SINE B4 0 224 8 8 1352 360 262 0 0 chr4 100543188 100543291 -55086829 + (CA)n Simple_repeat Simple_repeat 1 103 0 8 1352 930 225 80 0 chr4 100544443 100544643 -55085477 - B3 SINE B2 0 216 1 8 1352 528 122 0 0 chr4 100544920 100545002 -55085118 + (TC)n Simple_repeat Simple_repeat 2 83 0 8 1352 379 219 0 0 chr4 100545357 100545439 -55084681 + B1_Mm SINE Alu 44 125 -22 8 1352 516 270 79 15 chr4 100545762 100545965 -55084155 - B3 SINE B2 0 216 1 8 1352 420 300 87 39 chr4 100546373 100546637 -55083483 - L1MEf LINE L1 -5173 1929 1602 8 1352 302 167 83 0 chr4 100546683 100546743 -55083377 + B1_Mur1 SINE Alu 83 147 -2 9 1352 257 386 7 29 chr4 100546941 100547077 -55083043 - RSINE1 SINE B4 -31 134 2 9 1352 278 286 81 97 chr4 100547097 100547283 -55082837 - L1MEf LINE L1 -5486 1616 1434 8 1352 23 0 0 0 chr4 100547450 100547473 -55082647 + AT_rich Low_complexity Low_complexity 1 23 0 9 1352 790 278 53 0 chr4 100548427 100548636 -55081484 + ID_B1 SINE B4 2 221 -3 9 1352 1780 268 66 74 chr4 100548683 100549550 -55080570 + Lx7 LINE L1 4891 5751 -1945 9 1352 812 212 106 0 chr4 100549556 100549726 -55080394 + B3 SINE B2 1 188 -28 9 1352 402 21 0 0 chr4 100549726 100549773 -55080347 + (CATA)n Simple_repeat Simple_repeat 4 50 0 9 1352 497 268 40 60 chr4 100549813 100550063 -55080057 + Lx7 LINE L1 5745 5989 -1484 9 1352 357 313 87 0 chr4 100550081 100550196 -55079924 - RSINE1 SINE B4 -36 129 5 9 1352 2397 45 48 0 chr4 100550791 100551101 -55079019 - L1_Mus1 LINE L1 0 6567 6243 9 1352 4614 70 3 8 chr4 100551088 100551676 -55078444 - L1Md_F2 LINE L1 -411 6171 5587 9 1352 1015 50 0 0 chr4 100551699 100551820 -55078300 + L1_Mm LINE L1 5412 5532 -351 1 1352 495 0 0 0 chr4 100551925 100551980 -55078140 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1352 218 152 17 0 chr4 100553017 100553076 -55077044 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1352 266 324 0 0 chr4 100553197 100553265 -55076855 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 1 1352 387 127 0 0 chr4 100554839 100554902 -55075218 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1352 2040 137 3 24 chr4 100554966 100555302 -55074818 - ORR1A4 LTR MaLR 0 329 1 1 1352 4186 151 40 110 chr4 100555302 100556418 -55073702 - ORR1A4-int LTR MaLR -191 1772 633 1 1352 3219 35 22 12 chr4 100556418 100556825 -55073295 + IAPLTR2a LTR ERVK 1 411 0 1 1352 4186 150 46 102 chr4 100556825 100557535 -55072585 - ORR1A4-int LTR MaLR -1269 694 1 1 1352 909 109 4 9 chr4 100557536 100557701 -55072419 - ORR1A4 LTR MaLR -1 393 187 1 1352 1055 71 0 0 chr4 100557855 100557996 -55072124 + ORR1A3 LTR MaLR 183 323 -3 1 1352 657 221 76 110 chr4 100558229 100558493 -55071627 + RCHARR1 DNA MER1_type 711 965 -9 1 1352 747 235 82 11 chr4 100559699 100559981 -55070139 + MTD LTR MaLR 6 379 0 1 1352 271 252 128 18 chr4 100560276 100560385 -55069735 + MLT1A LTR MaLR 254 374 0 1 1352 302 183 22 79 chr4 100561559 100561648 -55068472 + MT2B2 LTR ERVL 172 255 -329 1 1352 370 250 94 0 chr4 100561569 100561665 -55068455 + PB1D7 SINE Alu 15 119 -1 1 1352 355 261 281 17 chr4 100561665 100561892 -55068228 + B4 SINE B4 2 288 -4 1 1352 363 242 11 42 chr4 100564162 100564257 -55065863 + ID_B1 SINE B4 5 96 -128 1 1352 8333 49 0 3 chr4 100564553 100565979 -55064141 - L1Md_F2 LINE L1 0 6582 5160 1 1352 1083 58 0 0 chr4 100566217 100566356 -55063764 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 1 1352 885 235 9 48 chr4 100567244 100567454 -55062666 - B3 SINE B2 -13 203 2 1 1352 21 0 0 0 chr4 100567947 100567968 -55062152 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 203 184 0 0 chr4 100568692 100568730 -55061390 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 1 1352 389 289 93 36 chr4 100568798 100568938 -55061182 - MER20 DNA MER1_type -31 188 41 1 1352 499 269 77 0 chr4 100572115 100572245 -55057875 - ID_B1 SINE B4 -11 213 74 1 1352 247 284 16 87 chr4 100572155 100572282 -55057838 - MT2B LTR ERVL -360 241 124 1 1352 1174 148 111 24 chr4 100572548 100572755 -55057365 + URR1B DNA MER1_type 1 225 0 1 1352 263 96 58 35 chr4 100572969 100573055 -55057065 + T-rich Low_complexity Low_complexity 4 91 0 1 1352 1190 48 0 0 chr4 100573057 100573202 -55056918 - B1_Mus1 SINE Alu -1 147 3 1 1352 348 341 92 15 chr4 100573380 100573511 -55056609 + RSINE1 SINE B4 4 144 -21 1 1352 480 18 0 0 chr4 100573517 100573574 -55056546 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1352 532 306 72 82 chr4 100575554 100575855 -55054265 - MLT2D LTR ERVL -7 407 115 1 1352 2348 71 38 19 chr4 100575855 100576172 -55053948 - ORR1A2 LTR MaLR -2 325 3 1 1352 532 306 72 82 chr4 100576172 100576275 -55053845 - MLT2D LTR ERVL -300 114 7 1 1352 21 0 0 0 chr4 100577084 100577105 -55053015 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 557 205 45 96 chr4 100577169 100577347 -55052773 - B4A SINE B4 -18 274 106 1 1352 408 307 52 17 chr4 100578926 100579042 -55051078 + RSINE1 SINE B4 38 157 -8 1 1352 970 232 5 27 chr4 100579218 100579439 -55050681 - B3 SINE B2 0 216 1 1 1352 485 250 18 0 chr4 100580549 100580661 -55049459 - PB1D9 SINE Alu -6 114 1 1 1352 204 40 0 0 chr4 100580885 100580910 -55049210 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1352 489 17 0 0 chr4 100581139 100581197 -55048923 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1352 272 27 27 0 chr4 100582977 100583014 -55047106 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1352 216 189 0 39 chr4 100584516 100584593 -55045527 + CT-rich Low_complexity Low_complexity 1 74 0 1 1352 496 163 20 39 chr4 100584879 100584981 -55045139 - PB1D9 SINE Alu -9 111 12 1 1352 432 0 0 0 chr4 100585289 100585337 -55044783 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1352 192 136 56 11 chr4 100586683 100586772 -55043348 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1352 21 0 0 0 chr4 100586879 100586900 -55043220 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 734 282 61 27 chr4 100586906 100587168 -55042952 + B4A SINE B4 6 276 -16 1 1352 620 201 0 12 chr4 100587182 100587343 -55042777 + CT-rich Low_complexity Low_complexity 3 161 0 1 1352 233 302 102 17 chr4 100587526 100587644 -55042476 - MER3 DNA MER1_type -4 205 78 1 1352 346 305 107 0 chr4 100587751 100587882 -55042238 + MER58B DNA MER1_type 174 318 -23 1 1352 5454 89 34 7 chr4 100588363 100589128 -55040992 + L1_Mus4 LINE L1 5850 6635 -1 1 1352 1356 226 111 19 chr4 100589342 100589800 -55040320 - RMER4B LTR ERVK -8 458 26 1 1352 528 56 0 0 chr4 100590069 100590141 -55039979 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 1 1352 800 286 78 7 chr4 100592353 100592624 -55037496 - MER2 DNA MER2_type -25 320 31 1 1352 402 300 18 17 chr4 100592790 100592943 -55037177 + B4A SINE B4 17 170 -122 1 1352 205 224 0 39 chr4 100593019 100593070 -55037050 + (CATG)n Simple_repeat Simple_repeat 4 52 0 1 1352 290 267 182 37 chr4 100593638 100593852 -55036268 + MLT1A0 LTR MaLR 97 341 -24 1 1352 234 300 99 52 chr4 100594013 100594224 -55035896 - L2 LINE L2 -352 3067 2847 1 1352 2059 121 61 19 chr4 100595076 100595439 -55034681 + ORR1B1 LTR MaLR 9 386 -8 1 1352 216 247 65 0 chr4 100595585 100595662 -55034458 + ID2 SINE ID 2 83 0 1 1352 324 307 23 23 chr4 100596952 100597082 -55033038 + Tigger5 DNA MER2_type 109 238 -2168 1 1352 258 274 0 0 chr4 100597105 100597156 -55032964 + Tigger5 DNA MER2_type 2356 2406 0 1 1352 712 77 35 87 chr4 100597289 100597461 -55032659 + RMER17B LTR ERVK 301 463 -495 1 1352 190 51 0 71 chr4 100598095 100598137 -55031983 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1352 216 0 0 0 chr4 100598566 100598590 -55031530 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 1352 207 0 0 0 chr4 100599589 100599612 -55030508 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1352 311 258 0 16 chr4 100599640 100599703 -55030417 - B1_Mur4 SINE Alu -88 62 1 1 1352 217 105 17 50 chr4 100600016 100600045 -55030075 + A-rich Low_complexity Low_complexity 3 29 0 1 1352 739 149 6 57 chr4 100600045 100600202 -55029918 + B1_Mur3 SINE Alu 1 149 0 1 1352 217 105 17 50 chr4 100600202 100600232 -55029888 + A-rich Low_complexity Low_complexity 30 60 0 1 1352 1444 227 48 42 chr4 100601031 100601408 -55028712 + MTD LTR MaLR 10 388 -31 1 1352 573 15 0 0 chr4 100601409 100601475 -55028645 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1352 441 0 0 0 chr4 100601578 100601627 -55028493 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1352 1655 170 168 28 chr4 100601939 100602327 -55027793 + RMER10A LTR ERVL 1 442 0 1 1352 227 211 19 19 chr4 100602712 100602765 -55027355 - MLT1A1 LTR MaLR -332 76 24 1 1352 379 261 35 18 chr4 100603424 100603537 -55026583 - B3 SINE B2 0 216 102 1 1352 737 214 132 0 chr4 100603549 100603731 -55026389 - Lx9 LINE L1 -897 6747 6542 1 1352 8442 36 1 1 chr4 100604522 100605723 -55024397 - L1Md_F2 LINE L1 0 6582 5381 1 1352 2823 33 0 40 chr4 100605723 100606074 -55024046 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1352 7850 23 3 0 chr4 100606074 100606955 -55023165 - IAPEz-int LTR ERVK 0 6481 5598 1 1352 28051 29 28 12 chr4 100606946 100610235 -55019885 - IAPEz-int LTR ERVK -3130 3351 8 1 1352 2843 36 0 37 chr4 100610235 100610585 -55019535 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1352 2588 26 0 0 chr4 100610585 100610888 -55019232 - L1Md_F2 LINE L1 -497 5386 5084 1 1352 499 155 212 20 chr4 100611050 100611149 -55018971 - PB1D9 SINE Alu -2 118 1 1 1352 385 339 39 0 chr4 100611173 100611303 -55018817 + Tigger5 DNA MER2_type 4 138 -2268 1 1352 409 238 40 0 chr4 100611407 100611508 -55018612 + Tigger5 DNA MER2_type 2189 2293 -113 1 1352 202 275 20 71 chr4 100611636 100611734 -55018386 - MIR3 SINE MIR -31 177 85 1 1352 495 254 62 45 chr4 100613232 100613409 -55016711 - B3A SINE B2 -18 180 1 1 1352 277 239 31 93 chr4 100613410 100613507 -55016613 - B1F1 SINE Alu -33 116 26 1 1352 5238 198 98 57 chr4 100613907 100614035 -55016085 - Lx9 LINE L1 -7 7637 7447 1 1352 390 21 0 0 chr4 100614035 100614082 -55016038 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1352 5238 198 98 57 chr4 100614082 100615014 -55015106 - Lx9 LINE L1 -198 7446 6513 1 1352 1250 133 450 17 chr4 100615014 100615305 -55014815 - MTC LTR MaLR 0 421 5 1 1352 5238 198 98 57 chr4 100615305 100615552 -55014568 - Lx9 LINE L1 -1132 6512 6275 1 1352 1194 131 116 0 chr4 100615864 100616062 -55014058 - URR1B DNA MER1_type 0 225 5 1 1352 1701 105 190 11 chr4 100619526 100619805 -55010315 + ORR1A4 LTR MaLR 1 329 0 1 1352 386 269 38 19 chr4 100620306 100620412 -55009708 + B1F SINE Alu 10 117 -32 1 1352 270 136 0 0 chr4 100620421 100620465 -55009655 + (CCA)n Simple_repeat Simple_repeat 1 44 0 1 1352 412 270 159 33 chr4 100620469 100620714 -55009406 + B4 SINE B4 1 276 -16 1 1352 399 83 0 0 chr4 100620742 100620802 -55009318 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1352 324 0 0 0 chr4 100620802 100620837 -55009283 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1352 205 138 0 0 chr4 100622621 100622650 -55007470 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1 1352 1129 173 0 47 chr4 100622752 100622988 -55007132 - URR1B DNA MER1_type 0 225 1 1 1352 456 19 0 0 chr4 100624506 100624559 -55005561 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1352 210 105 0 0 chr4 100625014 100625052 -55005068 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1352 1173 55 0 20 chr4 100625229 100625376 -55004744 + B1_Mus1 SINE Alu 1 144 -4 1 1352 295 212 0 70 chr4 100625442 100625528 -55004592 + PB1 SINE Alu 48 127 0 1 1352 22 0 0 0 chr4 100626403 100626425 -55003695 + AT_rich Low_complexity Low_complexity 1 22 0 1 1352 237 159 0 0 chr4 100626453 100626497 -55003623 + T-rich Low_complexity Low_complexity 1 44 0 1 1352 344 269 0 0 chr4 100626497 100626590 -55003530 - PB1D10 SINE Alu 0 117 25 1 1352 804 268 123 30 chr4 100626992 100627261 -55002859 + MTD LTR MaLR 6 299 -120 1 1352 298 273 63 47 chr4 100627539 100627666 -55002454 - Charlie8 DNA MER1_type -2238 190 62 2 1352 1690 189 98 11 chr4 100628833 100629202 -55000918 + Lx7 LINE L1 6947 7347 -349 2 1352 876 108 0 0 chr4 100629331 100629461 -55000659 + (GAAA)n Simple_repeat Simple_repeat 4 133 0 2 1352 576 193 95 48 chr4 100629658 100629805 -55000315 + Lx7 LINE L1 7117 7270 -426 2 1352 450 36 0 0 chr4 100630822 100630878 -54999242 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1352 497 329 33 23 chr4 100630883 100631098 -54999022 - B4A SINE B4 0 292 76 2 1352 435 257 40 0 chr4 100633257 100633358 -54996762 - PB1D10 SINE Alu 0 117 13 2 1352 614 274 20 70 chr4 100633377 100633412 -54996708 + B3A SINE B2 4 34 -164 2 1352 216 0 0 0 chr4 100633412 100633436 -54996684 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1352 1000 118 0 0 chr4 100633436 100633572 -54996548 - B1_Mus1 SINE Alu -10 138 3 2 1352 614 274 20 70 chr4 100633572 100633735 -54996385 + B3A SINE B2 35 192 -6 2 1352 387 0 0 0 chr4 100634598 100634641 -54995479 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1352 468 0 0 0 chr4 100634641 100634692 -54995428 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1352 639 173 13 97 chr4 100634945 100635099 -54995021 + B1_Mur4 SINE Alu 10 150 0 2 1352 526 265 15 7 chr4 100635724 100635861 -54994259 + B1_Mur1 SINE Alu 1 138 -11 2 1352 525 168 176 0 chr4 100636817 100636942 -54993178 - B1_Mur2 SINE Alu 0 149 3 2 1352 891 110 0 88 chr4 100637633 100637793 -54992327 + B1_Mus1 SINE Alu 3 148 0 2 1352 228 135 0 0 chr4 100637793 100637830 -54992290 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1352 186 43 0 0 chr4 100638079 100638102 -54992018 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 1352 216 0 0 0 chr4 100638102 100638126 -54991994 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 2 1352 1148 54 7 0 chr4 100638126 100638273 -54991847 - B1_Mus1 SINE Alu 0 148 1 2 1352 356 265 98 39 chr4 100639819 100639972 -54990148 + RSINE1 SINE B4 2 163 -2 2 1352 216 0 0 0 chr4 100641321 100641345 -54988775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1352 570 76 0 0 chr4 100641353 100641432 -54988688 - B2_Mm2 SINE B2 -22 173 95 2 1352 24 32 0 0 chr4 100641464 100641495 -54988625 + AT_rich Low_complexity Low_complexity 1 31 0 2 1352 1430 80 5 5 chr4 100641533 100641722 -54988398 + B2_Mm2 SINE B2 5 193 -2 2 1352 2498 31 0 3 chr4 100642707 100643000 -54987120 + L1Md_F2 LINE L1 6291 6582 0 2 1352 215 281 18 0 chr4 100643067 100643124 -54986996 - ID4_ SINE ID -25 58 1 2 1352 189 147 0 0 chr4 100643178 100643212 -54986908 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1352 290 378 7 0 chr4 100643811 100643959 -54986161 + B1F SINE Alu 1 149 0 2 1352 1528 262 90 33 chr4 100643989 100644664 -54985456 - L1MA6 LINE L1 -218 6082 5369 2 1352 242 48 0 67 chr4 100645390 100645435 -54984685 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1352 401 203 97 111 chr4 100645541 100645685 -54984435 + B1_Mur1 SINE Alu 7 148 -1 2 1352 925 49 138 0 chr4 100645737 100645860 -54984260 - B1_Mm SINE Alu -6 141 2 2 1352 23 0 0 0 chr4 100646030 100646053 -54984067 + AT_rich Low_complexity Low_complexity 1 23 0 2 1352 341 197 14 0 chr4 100648254 100648325 -54981795 + ID4 SINE ID 12 83 0 2 1352 936 187 71 15 chr4 100648330 100648526 -54981594 + B3 SINE B2 1 207 -9 2 1352 322 91 321 26 chr4 100648527 100648639 -54981481 - B2_Mm2 SINE B2 -4 191 47 2 1352 743 123 9 0 chr4 100648676 100648790 -54981330 - B2_Mm1t SINE B2 -77 116 2 2 1352 24 0 0 0 chr4 100649100 100649124 -54980996 + AT_rich Low_complexity Low_complexity 1 24 0 2 1352 243 299 51 120 chr4 100649124 100649299 -54980821 - RSINE1 SINE B4 0 165 3 2 1352 580 278 78 26 chr4 100649336 100649528 -54980592 + B4A SINE B4 75 276 -16 2 1352 180 0 0 0 chr4 100649649 100649669 -54980451 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1352 332 134 24 0 chr4 100651025 100651107 -54979013 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2 1352 307 262 70 16 chr4 100651147 100651275 -54978845 + MIR SINE MIR 105 239 -23 2 1352 324 224 45 0 chr4 100652157 100652224 -54977896 + B3A SINE B2 1 70 -128 2 1352 185 333 54 27 chr4 100652646 100652757 -54977363 - MIRc SINE MIR -110 158 45 2 1352 435 263 70 32 chr4 100653076 100653233 -54976887 + RSINE1 SINE B4 3 165 0 2 1352 221 260 0 0 chr4 100653233 100653283 -54976837 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2 1352 387 89 0 0 chr4 100653888 100653944 -54976176 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1352 1592 152 74 12 chr4 100654042 100654123 -54975997 - RLTR20A LTR ERVK 0 541 441 2 1352 336 125 0 0 chr4 100654123 100654187 -54975933 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1352 1592 186 94 14 chr4 100654187 100654586 -54975534 - RLTR20A LTR ERVK -101 440 2 2 1352 774 60 0 0 chr4 100655277 100655377 -54974743 + (GAAA)n Simple_repeat Simple_repeat 3 102 0 2 1352 1382 144 5 9 chr4 100655459 100655683 -54974437 + URR1B DNA MER1_type 1 223 -2 2 1352 657 239 80 56 chr4 100656409 100656433 -54973687 - MT2A LTR ERVL 0 533 518 2 1352 1561 107 4 18 chr4 100656433 100656662 -54973458 + URR1A DNA MER1_type 1 226 0 2 1352 657 250 81 53 chr4 100656662 100656901 -54973219 - MT2A LTR ERVL -16 585 228 2 1352 315 0 0 0 chr4 100656901 100656936 -54973184 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1352 605 287 91 74 chr4 100656936 100657147 -54972973 - MT2A LTR ERVL -262 339 1 2 1352 1041 83 14 7 chr4 100657447 100657593 -54972527 + B1_Mus1 SINE Alu 2 148 0 2 1352 749 199 249 12 chr4 100657723 100657896 -54972224 + B3 SINE B2 3 216 0 2 1352 563 308 0 19 chr4 100658241 100658403 -54971717 - RSINE1 SINE B4 -3 162 4 2 1352 1318 85 26 16 chr4 100658419 100658611 -54971509 - B2_Mm2 SINE B2 0 195 2 2 1352 3556 20 2 0 chr4 100658679 100659074 -54971046 - MTA_Mm LTR MaLR 0 396 1 2 1352 682 305 52 48 chr4 100659541 100659813 -54970307 - MTE2b LTR MaLR -34 345 73 2 1352 933 186 43 33 chr4 100659877 100660088 -54970032 + B3 SINE B2 4 216 0 2 1352 397 147 0 0 chr4 100660274 100660342 -54969778 + B3A SINE B2 9 76 -122 2 1352 863 151 14 7 chr4 100660492 100660639 -54969481 + B1_Mur4 SINE Alu 2 149 -1 2 1352 456 51 0 0 chr4 100661256 100661315 -54968805 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1352 258 262 0 0 chr4 100661316 100661377 -54968743 + (TATG)n Simple_repeat Simple_repeat 3 63 0 2 1352 623 270 36 42 chr4 100661546 100661739 -54968381 + B4A SINE B4 4 195 -97 2 1352 808 112 58 22 chr4 100662118 100662255 -54967865 + B1_Mur3 SINE Alu 1 142 -7 2 1352 447 19 0 0 chr4 100662268 100662320 -54967800 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1353 269 321 26 26 chr4 100664217 100664332 -54965788 - Tigger5 DNA MER2_type -1 2405 2291 2 1353 505 279 143 18 chr4 100664320 100664543 -54965577 - Tigger5 DNA MER2_type -2155 251 1 2 1353 1153 138 5 16 chr4 100664551 100664742 -54965378 - B2_Mm2 SINE B2 -5 190 2 2 1353 504 0 0 0 chr4 100666395 100666451 -54963669 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 2 1353 780 213 19 0 chr4 100667666 100667821 -54962299 + RSINE1 SINE B4 2 159 -6 2 1353 440 179 0 0 chr4 100667841 100667917 -54962203 - B1_Mur4 SINE Alu -22 128 52 2 1353 249 241 58 35 chr4 100667919 100668005 -54962115 - ORR1E LTR MaLR -10 369 282 2 1353 289 325 0 0 chr4 100668171 100668248 -54961872 - ORR1E LTR MaLR -225 134 58 2 1353 588 232 21 21 chr4 100669767 100669908 -54960212 + B1_Mur1 SINE Alu 2 142 -7 2 1353 238 250 0 0 chr4 100670198 100670242 -54959878 + (CGTG)n Simple_repeat Simple_repeat 2 45 0 2 1353 275 228 70 81 chr4 100670366 100670452 -54959668 - ID SINE ID -139 85 1 2 1353 225 154 0 0 chr4 100670736 100670775 -54959345 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1353 445 276 90 80 chr4 100671235 100671523 -54958597 + B4 SINE B4 2 292 0 2 1353 257 346 0 0 chr4 100672242 100672323 -54957797 - ID4 SINE ID -1 82 2 2 1353 363 298 81 3 chr4 100672332 100672466 -54957654 - B1F SINE Alu -5 144 1 2 1353 383 197 217 25 chr4 100672550 100672670 -54957450 + B1F SINE Alu 1 143 -6 2 1353 990 64 7 0 chr4 100673516 100673657 -54956463 - URR1A DNA MER1_type -2 224 83 2 1353 414 0 0 0 chr4 100673684 100673730 -54956390 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1353 210 37 0 0 chr4 100676319 100676346 -54953774 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1353 516 16 0 0 chr4 100676347 100676408 -54953712 + (GGAAA)n Simple_repeat Simple_repeat 4 64 0 2 1353 3573 65 8 36 chr4 100677293 100677789 -54952331 + L1_Mus3 LINE L1 6156 6637 -1 2 1353 1015 103 0 0 chr4 100678090 100678226 -54951894 + B1_Mus1 SINE Alu 3 138 -10 2 1353 641 13 13 0 chr4 100678226 100678304 -54951816 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 1353 611 233 0 0 chr4 100678320 100678449 -54951671 + B3A SINE B2 2 130 -68 2 1353 1143 116 66 0 chr4 100678516 100678697 -54951423 - B2_Mm2 SINE B2 -2 193 1 2 1353 343 268 69 40 chr4 100679291 100679392 -54950728 + PB1D10 SINE Alu 1 104 -13 2 1353 321 100 0 0 chr4 100679538 100679588 -54950532 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 2 1353 544 196 367 0 chr4 100679592 100679750 -54950370 - B3 SINE B2 0 216 1 2 1353 395 314 8 8 chr4 100680782 100680904 -54949216 - MER106B DNA MER1_type -922 137 16 2 1353 504 0 0 0 chr4 100682096 100682152 -54947968 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1353 619 296 101 50 chr4 100682203 100682481 -54947639 - B4A SINE B4 0 292 1 2 1353 203 61 30 0 chr4 100682623 100682656 -54947464 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 1353 3562 50 28 0 chr4 100682656 100683079 -54947041 - RLTR10C LTR ERVK -1 435 1 3 1353 7183 57 9 58 chr4 100683079 100684058 -54946062 - MMERVK10C-int LTR ERVK 0 7581 6651 3 1353 19420 47 0 1 chr4 100684049 100686554 -54943566 - MMERVK10C-int LTR ERVK -1771 5810 3512 3 1353 366 67 0 0 chr4 100686557 100686602 -54943518 - MMERVK10C-int LTR ERVK -6405 137 93 3 1353 291 195 0 44 chr4 100686602 100686693 -54943427 + T-rich Low_complexity Low_complexity 3 89 0 3 1353 398 0 0 0 chr4 100686775 100686818 -54943302 - MMERVK10C-int LTR ERVK -7314 267 225 3 1353 245 200 0 0 chr4 100686818 100686863 -54943257 - RLTR27 LTR ERVK -34 275 231 3 1353 1491 56 0 0 chr4 100686863 100687043 -54943077 - MMERVK10C-int LTR ERVK -7401 180 1 3 1353 3286 47 68 12 chr4 100687043 100687456 -54942664 - RLTR10C LTR ERVK 0 436 1 3 1353 700 139 69 15 chr4 100687460 100687591 -54942529 - RMER19B LTR ERVK 0 902 765 3 1353 564 27 0 0 chr4 100687591 100687720 -54942400 + L1Md_T LINE L1 6510 6582 0 3 1353 4030 187 14 27 chr4 100687722 100688502 -54941618 - RMER19B LTR ERVK -132 770 1 3 1353 206 159 0 22 chr4 100688504 100688549 -54941571 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 1353 667 268 91 25 chr4 100689340 100689581 -54940539 - B4A SINE B4 0 292 36 3 1353 229 233 151 0 chr4 100689948 100690021 -54940099 - MLT1A1 LTR MaLR -16 392 309 3 1353 3299 150 66 30 chr4 100690323 100690913 -54939207 - RMER19C LTR ERVK 0 611 1 3 1353 444 292 83 55 chr4 100691286 100691467 -54938653 + RMER30 DNA MER1_type 7 192 -10 3 1353 441 320 209 12 chr4 100691744 100692239 -54937881 - L1MB7 LINE L1 -124 6060 5468 3 1353 331 245 257 26 chr4 100692248 100692349 -54937771 + B1_Mur1 SINE Alu 6 135 -14 3 1353 279 54 0 0 chr4 100692349 100692386 -54937734 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 3 1353 331 245 257 26 chr4 100692386 100692397 -54937723 + B1_Mur1 SINE Alu 136 144 -5 3 1353 339 264 14 0 chr4 100692444 100692516 -54937604 - ID4_ SINE ID -9 74 2 3 1353 633 27 0 0 chr4 100693978 100694053 -54936067 + (GGA)n Simple_repeat Simple_repeat 3 77 0 3 1353 321 248 99 18 chr4 100694263 100694374 -54935746 + PB1D7 SINE Alu 1 120 0 3 1353 393 301 71 25 chr4 100694757 100694955 -54935165 + MER2 DNA MER2_type 11 217 -128 3 1353 213 292 15 15 chr4 100694965 100695031 -54935089 + ID4_ SINE ID 4 69 -14 3 1353 257 282 77 0 chr4 100695063 100695141 -54934979 + MER2 DNA MER2_type 211 294 -51 3 1353 261 0 0 0 chr4 100695186 100695215 -54934905 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1353 881 228 80 101 chr4 100695218 100695594 -54934526 - RLTR9A LTR ERVK 0 368 1 3 1353 873 187 48 21 chr4 100695801 100695987 -54934133 - B3 SINE B2 -24 192 2 3 1353 505 245 6 109 chr4 100696162 100696327 -54933793 + B1_Mur1 SINE Alu 2 149 0 3 1353 22 35 0 0 chr4 100696510 100696539 -54933581 + AT_rich Low_complexity Low_complexity 1 29 0 3 1353 785 179 7 33 chr4 100696774 100696924 -54933196 + B1_Mus1 SINE Alu 3 148 0 3 1353 21 57 0 0 chr4 100697178 100697213 -54932907 + AT_rich Low_complexity Low_complexity 1 35 0 3 1353 451 275 22 7 chr4 100697319 100697458 -54932662 + L1MA6 LINE L1 5910 6050 -250 3 1353 231 171 0 0 chr4 100697475 100697516 -54932604 + RSINE1 SINE B4 2 42 -123 3 1353 348 24 0 0 chr4 100697548 100697589 -54932531 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1353 203 0 37 0 chr4 100697597 100697624 -54932496 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1353 1044 88 144 23 chr4 100697649 100697823 -54932297 + B2_Mm2 SINE B2 1 195 0 3 1353 798 173 58 0 chr4 100697823 100697961 -54932159 + B1_Mus2 SINE Alu 1 147 0 3 1353 450 262 33 6 chr4 100697966 100698138 -54931982 + L1MA6 LINE L1 6125 6288 -3 3 1353 22 56 0 0 chr4 100698214 100698250 -54931870 + AT_rich Low_complexity Low_complexity 1 36 0 3 1353 226 296 0 0 chr4 100698733 100698787 -54931333 + ID4_ SINE ID 28 81 -2 3 1353 579 254 35 21 chr4 100698888 100699029 -54931091 + B1_Mur1 SINE Alu 1 143 -6 3 1353 258 296 8 33 chr4 100700517 100700658 -54929462 - L1MB4 LINE L1 -25 6158 6021 3 1353 259 294 135 64 chr4 100700681 100700837 -54929283 - MIR3 SINE MIR -10 198 32 3 1353 414 220 71 70 chr4 100701137 100701370 -54928750 + MLT2B4 LTR ERVL 6 329 -227 3 1353 709 220 71 28 chr4 100702126 100702308 -54927812 - MTD LTR MaLR -205 214 25 3 1353 180 0 0 0 chr4 100702318 100702338 -54927782 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1353 267 352 40 16 chr4 100702342 100702418 -54927702 + B3 SINE B2 73 153 -63 3 1353 528 16 0 0 chr4 100702418 100702479 -54927641 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1353 267 352 40 16 chr4 100702479 100702526 -54927594 + B3 SINE B2 154 198 -18 3 1353 456 258 0 55 chr4 100702480 100702607 -54927513 - B4A SINE B4 0 292 173 3 1353 460 370 34 37 chr4 100703613 100703822 -54926298 + MER74A LTR ERVL 91 304 -254 3 1353 2191 136 73 11 chr4 100703822 100704193 -54925927 + ORR1B1 LTR MaLR 1 394 0 3 1353 460 370 34 37 chr4 100704193 100704278 -54925842 + MER74A LTR ERVL 305 384 -174 3 1353 1036 128 6 6 chr4 100704578 100704758 -54925362 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 1353 196 352 80 0 chr4 100704965 100705053 -54925067 - L2b LINE L2 -18 3357 3263 3 1353 1064 103 7 0 chr4 100705564 100705710 -54924410 + B1_Mus1 SINE Alu 1 147 -1 3 1353 258 233 19 17 chr4 100705775 100705872 -54924248 + B3A SINE B2 84 178 -38 3 1353 309 244 0 0 chr4 100706070 100706156 -54923964 + GA-rich Low_complexity Low_complexity 2 87 0 3 1353 995 45 98 0 chr4 100706182 100706315 -54923805 + B1_Mm SINE Alu 1 146 -1 3 1353 214 137 39 0 chr4 100706325 100706376 -54923744 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1353 280 194 0 0 chr4 100706433 100706495 -54923625 + B3 SINE B2 155 216 0 3 1353 392 265 88 94 chr4 100707271 100707622 -54922498 - MLT1C LTR MaLR -72 433 6 3 1353 313 298 32 11 chr4 100707804 100707899 -54922221 + MLT1J LTR MaLR 232 328 -184 3 1353 751 206 201 4 chr4 100708038 100708267 -54921853 - B4A SINE B4 -18 274 1 3 1353 796 266 90 77 chr4 100708297 100708762 -54921358 - L1MA4 LINE L1 -376 5924 5454 3 1353 822 113 0 0 chr4 100708916 100709040 -54921080 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 3 1353 21 0 0 0 chr4 100709545 100709566 -54920554 + AT_rich Low_complexity Low_complexity 1 21 0 3 1353 243 0 0 0 chr4 100710116 100710143 -54919977 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1353 2011 140 176 16 chr4 100711573 100711936 -54918184 - MTC LTR MaLR 0 421 1 3 1353 230 234 0 0 chr4 100712309 100712356 -54917764 + GA-rich Low_complexity Low_complexity 2 48 0 3 1353 552 219 144 30 chr4 100712772 100712904 -54917216 - B1_Mur2 SINE Alu 0 149 3 3 1353 438 323 0 95 chr4 100712952 100713099 -54917021 - RSINE1 SINE B4 -31 134 2 3 1353 233 270 13 51 chr4 100713404 100713482 -54916638 + ID4 SINE ID 8 82 -1 3 1353 619 143 8 16 chr4 100713490 100713611 -54916509 + GA-rich Low_complexity Low_complexity 2 121 0 3 1353 242 333 0 0 chr4 100713859 100713931 -54916189 + ID4 SINE ID 2 73 -10 3 1353 317 156 21 32 chr4 100714064 100714157 -54915963 + CT-rich Low_complexity Low_complexity 2 93 0 3 1353 468 35 0 0 chr4 100714255 100714313 -54915807 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1353 384 272 0 0 chr4 100714353 100714434 -54915686 - ID4 SINE ID 0 83 3 3 1353 268 280 29 29 chr4 100715207 100715310 -54914810 - RLTR23 LTR ERV1 -4 426 324 3 1353 758 249 38 11 chr4 100715782 100715965 -54914155 + ORR1D1 LTR MaLR 1 188 -186 3 1353 2705 178 91 14 chr4 100715957 100716909 -54913211 + ORR1D1-int LTR MaLR 294 1369 -1 3 1353 1203 171 219 47 chr4 100716911 100717082 -54913038 + ORR1D1 LTR MaLR 1 180 -194 3 1353 864 117 0 0 chr4 100717082 100717236 -54912884 + (TC)n Simple_repeat Simple_repeat 1 154 0 3 1353 1203 171 219 47 chr4 100717236 100717383 -54912737 + ORR1D1 LTR MaLR 181 373 -1 3 1353 368 359 56 0 chr4 100717495 100717693 -54912427 + B3 SINE B2 1 209 -7 3 1353 29 0 0 0 chr4 100717694 100717723 -54912397 + AT_rich Low_complexity Low_complexity 1 29 0 3 1353 1005 102 0 45 chr4 100718038 100718192 -54911928 + B1_Mus1 SINE Alu 2 148 0 3 1353 502 314 63 21 chr4 100719088 100719277 -54910843 - B3A SINE B2 0 198 2 3 1353 274 294 33 0 chr4 100719631 100719723 -54910397 + RMER15 LTR ERVL 416 510 -65 3 1353 396 0 0 0 chr4 100719852 100719896 -54910224 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1353 351 65 0 0 chr4 100719896 100719941 -54910179 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1353 355 292 0 0 chr4 100719949 100720038 -54910082 - RSINE1 SINE B4 -74 91 3 3 1353 817 230 55 50 chr4 100720070 100720290 -54909830 + ID_B1 SINE B4 4 224 0 3 1353 1911 280 123 53 chr4 100720296 100721206 -54908914 + ORR1E-int LTR MaLR 553 1527 -53 3 1353 493 301 93 77 chr4 100721206 100721559 -54908561 + ORR1E LTR MaLR 1 359 0 3 1353 262 255 188 29 chr4 100722088 100722258 -54907862 - LTR16B1 LTR ERVL -268 212 16 3 1353 382 349 0 6 chr4 100722395 100722565 -54907555 - ERVL-E-int LTR ERVL -406 5261 5093 3 1353 1244 41 0 0 chr4 100722726 100722873 -54907247 + B1_Mm SINE Alu 1 147 0 3 1353 456 338 38 10 chr4 100723945 100724154 -54905966 - ERVL-E-int LTR ERVL -2741 2926 2712 3 1353 784 218 0 0 chr4 100724274 100724407 -54905713 + RSINE1 SINE B4 4 136 -29 3 1353 321 244 121 58 chr4 100724407 100724448 -54905672 + B2_Mm2 SINE B2 3 187 -8 3 1353 323 326 108 0 chr4 100724640 100724769 -54905351 - ERVL-E-int LTR ERVL -3268 2489 2347 3 1353 747 273 101 105 chr4 100724770 100725236 -54904884 - MLT2D LTR ERVL 0 464 1 3 1353 289 250 39 13 chr4 100725478 100725555 -54904565 - ERVL-E-int LTR ERVL -2978 2018 1940 3 1353 1603 47 0 0 chr4 100725578 100725770 -54904350 - B2_Mm1a SINE B2 0 193 2 3 1353 756 248 37 55 chr4 100726661 100726879 -54903241 + B3 SINE B2 1 214 -2 3 1353 948 271 53 0 chr4 100726879 100727145 -54902975 + B4A SINE B4 1 280 -12 3 1353 38979 11 3 7 chr4 100727248 100732856 -54897264 + L1Md_A LINE L1 1 5586 -297 3 1353 8978 14 0 0 chr4 100732856 100733851 -54896269 + L1Md_A LINE L1 5587 6581 -1 3 1353 841 221 15 49 chr4 100733866 100734071 -54896049 - B3A SINE B2 0 198 1 3 1353 754 249 38 47 chr4 100734085 100734304 -54895816 - B3 SINE B2 0 216 1 3 1353 183 80 0 0 chr4 100734432 100734457 -54895663 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1353 310 302 72 6 chr4 100734489 100734669 -54895451 - LTR16B1 LTR ERVL -1 479 288 3 1353 368 143 0 38 chr4 100734669 100734749 -54895371 + G-rich Low_complexity Low_complexity 4 80 0 3 1353 575 306 143 42 chr4 100734757 100735044 -54895076 - LTR16B1 LTR ERVL -153 327 12 3 1353 580 249 216 32 chr4 100735057 100735335 -54894785 + L1MA6 LINE L1 5951 6279 -21 3 1353 322 275 14 71 chr4 100735338 100735479 -54894641 + L1MC3 LINE L1 6521 6653 -1132 3 1353 304 208 23 115 chr4 100735575 100735662 -54894458 + PB1D10 SINE Alu 1 79 -38 3 1353 288 304 53 18 chr4 100735906 100736020 -54894100 - RMER15 LTR ERVL -52 523 406 4 1353 229 324 68 73 chr4 100736025 100736245 -54893875 - Lx8 LINE L1 -209 7264 7046 4 1353 704 252 0 7 chr4 100736909 100737045 -54893075 + RSINE1 SINE B4 13 147 -18 4 1353 372 22 0 0 chr4 100737046 100737091 -54893029 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1353 25 31 0 0 chr4 100737094 100737126 -54892994 + AT_rich Low_complexity Low_complexity 1 32 0 4 1353 212 283 38 0 chr4 100737128 100737181 -54892939 - B4A SINE B4 -156 136 82 4 1353 767 233 76 0 chr4 100738260 100738432 -54891688 - ID_B1 SINE B4 -38 186 2 4 1353 25 65 0 0 chr4 100738432 100738478 -54891642 + AT_rich Low_complexity Low_complexity 1 46 0 4 1353 216 97 0 0 chr4 100738586 100738617 -54891503 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1353 450 0 0 0 chr4 100738860 100738910 -54891210 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1353 180 0 0 0 chr4 100739055 100739075 -54891045 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1353 683 202 0 58 chr4 100739610 100739747 -54890373 - MTD LTR MaLR -289 130 2 4 1353 943 260 48 58 chr4 100739747 100740006 -54890114 + MTE2b LTR MaLR 121 376 -3 4 1353 465 296 134 17 chr4 100740056 100740355 -54889765 - L1MB5 LINE L1 -60 6114 5781 4 1353 794 245 1 5 chr4 100740660 100740847 -54889273 - B3A SINE B2 -33 183 2 4 1353 216 0 0 0 chr4 100740903 100740927 -54889193 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1353 23 105 0 0 chr4 100741571 100741657 -54888463 + GC_rich Low_complexity Low_complexity 1 86 0 4 1353 27 29 0 0 chr4 100741720 100741754 -54888366 + GC_rich Low_complexity Low_complexity 1 34 0 4 1353 428 225 36 9 chr4 100742737 100742849 -54887271 - PB1D10 SINE Alu -1 116 2 4 1353 220 244 39 0 chr4 100744378 100744422 -54885698 + T-rich Low_complexity Low_complexity 36 82 0 4 1353 968 129 7 0 chr4 100744422 100744561 -54885559 - B1_Mus2 SINE Alu -7 140 1 4 1353 220 244 39 0 chr4 100744561 100744594 -54885526 + T-rich Low_complexity Low_complexity 3 35 0 4 1353 728 236 57 33 chr4 100744596 100744806 -54885314 - B3 SINE B2 -1 215 1 4 1353 554 222 102 6 chr4 100744808 100745000 -54885120 - B4 SINE B4 -61 231 1 4 1353 501 241 22 15 chr4 100745193 100745328 -54884792 + B1F1 SINE Alu 2 137 -12 4 1353 329 222 82 14 chr4 100745357 100745430 -54884690 + BC1_Mm scRNA scRNA 8 85 -67 4 1353 595 289 177 4 chr4 100745734 100745977 -54884143 + B4A SINE B4 4 288 -4 4 1353 824 268 28 19 chr4 100746326 100746539 -54883581 - B3 SINE B2 -1 215 1 4 1353 207 0 0 0 chr4 100746597 100746620 -54883500 + (C)n Simple_repeat Simple_repeat 1 23 0 4 1353 313 248 83 58 chr4 100746690 100746810 -54883310 + B3 SINE B2 90 212 -4 4 1353 21 0 0 0 chr4 100746817 100746838 -54883282 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 960 148 0 0 chr4 100749468 100749637 -54880483 + (GGAA)n Simple_repeat Simple_repeat 3 171 0 4 1353 425 161 11 0 chr4 100749668 100749755 -54880365 + GA-rich Low_complexity Low_complexity 3 90 0 4 1353 427 16 0 116 chr4 100750260 100750329 -54879791 + B1_Mm SINE Alu 87 147 0 4 1353 300 119 0 0 chr4 100750329 100750388 -54879732 + (A)n Simple_repeat Simple_repeat 1 59 0 4 1353 189 0 0 0 chr4 100750393 100750414 -54879706 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1353 358 244 274 8 chr4 100750830 100750954 -54879166 + RSINE1 SINE B4 4 160 -5 4 1353 459 0 0 0 chr4 100750954 100751005 -54879115 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1353 261 83 0 0 chr4 100751305 100751341 -54878779 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1353 1098 227 35 26 chr4 100751397 100751623 -54878497 - B4 SINE B4 -64 228 1 4 1353 455 190 90 112 chr4 100751754 100751785 -54878335 - B2_Mm2 SINE B2 -12 183 147 4 1353 225 0 0 0 chr4 100751785 100751810 -54878310 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1353 447 19 0 0 chr4 100751810 100751861 -54878259 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1353 641 190 90 112 chr4 100751861 100752006 -54878114 - B3A SINE B2 -42 156 10 4 1353 302 252 231 10 chr4 100752047 100752151 -54877969 - RSINE1 SINE B4 -31 134 8 4 1353 198 331 42 76 chr4 100752287 100752431 -54877689 - L3 LINE CR1 -354 4135 3997 4 1353 322 323 67 56 chr4 100752537 100752731 -54877389 - MIRb SINE MIR -8 200 10 4 1353 583 277 237 33 chr4 100753168 100753476 -54876644 + ORR1E LTR MaLR 2 372 -7 4 1353 834 159 51 0 chr4 100753539 100753677 -54876443 - B1_Mus1 SINE Alu -2 146 2 4 1353 393 236 53 16 chr4 100753683 100753800 -54876320 - B1F1 SINE Alu -2 125 2 4 1353 182 354 82 41 chr4 100753800 100753971 -54876149 + L4 LINE RTE 1096 1273 -756 4 1353 303 231 158 26 chr4 100754038 100754154 -54875966 + PB1D10 SINE Alu 2 127 -22 4 1353 573 337 53 46 chr4 100754164 100754447 -54875673 + B4A SINE B4 7 291 -1 4 1353 438 273 13 25 chr4 100754453 100754611 -54875509 + (CATA)n Simple_repeat Simple_repeat 4 159 0 4 1353 428 228 125 20 chr4 100755961 100756113 -54874007 - L1MC4 LINE L1 -413 7629 7462 4 1353 333 280 91 0 chr4 100756303 100756446 -54873674 - L1MC4 LINE L1 -953 7089 6934 4 1353 726 274 44 78 chr4 100756484 100756777 -54873343 + B4A SINE B4 2 284 -8 4 1353 614 255 20 27 chr4 100757704 100757853 -54872267 + B4A SINE B4 81 228 -64 4 1353 644 232 25 31 chr4 100757854 100758014 -54872106 + RSINE1 SINE B4 3 161 -4 4 1353 501 220 9 0 chr4 100758137 100758246 -54871874 + RCHARR1 DNA MER1_type 389 498 -476 4 1353 369 290 69 42 chr4 100758286 100758430 -54871690 + B4A SINE B4 77 224 -68 4 1353 240 111 0 0 chr4 100758432 100758468 -54871652 + (ATG)n Simple_repeat Simple_repeat 1 36 0 4 1353 264 59 0 0 chr4 100758989 100759023 -54871097 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1353 2356 137 21 8 chr4 100759031 100759420 -54870700 + ORR1B1 LTR MaLR 1 394 0 4 1353 243 318 0 83 chr4 100759427 100759443 -54870677 + B4A SINE B4 216 230 -62 4 1353 659 294 25 0 chr4 100759443 100759644 -54870476 + B3 SINE B2 1 206 -10 4 1353 243 318 0 83 chr4 100759644 100759699 -54870421 + B4A SINE B4 231 281 -11 4 1353 1756 224 62 2 chr4 100759734 100760168 -54869952 + RCHARR1 DNA MER1_type 482 941 -33 4 1353 403 351 40 74 chr4 100760270 100760593 -54869527 - ORR1E LTR MaLR -41 318 7 4 1353 362 314 40 0 chr4 100760610 100760785 -54869335 + L1M5 LINE L1 4622 4803 -1343 4 1353 237 289 47 116 chr4 100761142 100761271 -54868849 - MLT1A LTR MaLR -244 130 11 4 1353 187 171 98 0 chr4 100761312 100761353 -54868767 - L3 LINE CR1 -1993 2496 2452 4 1353 638 324 50 84 chr4 100761504 100761878 -54868242 + ORR1E LTR MaLR 1 378 -1 4 1353 326 231 46 0 chr4 100761984 100762049 -54868071 + ID_B1 SINE B4 99 166 -58 4 1353 313 261 83 42 chr4 100762049 100762080 -54868040 + PB1D10 SINE Alu 18 117 0 4 1353 203 204 19 0 chr4 100762093 100762147 -54867973 + A-rich Low_complexity Low_complexity 3 57 0 4 1353 229 256 0 0 chr4 100762260 100762303 -54867817 + C-rich Low_complexity Low_complexity 1 43 0 4 1353 550 295 7 35 chr4 100762304 100762448 -54867672 - ID_B1 SINE B4 0 224 85 4 1353 4175 206 31 5 chr4 100762775 100763582 -54866538 + Lx7 LINE L1 6097 6924 -772 4 1353 3921 167 59 44 chr4 100763574 100764407 -54865713 + Lx7 LINE L1 6836 7680 -16 4 1353 700 342 91 3 chr4 100764412 100764764 -54865356 - MLT2C1 LTR ERVL -14 383 1 4 1353 482 285 0 0 chr4 100764940 100765070 -54865050 + B1F2 SINE Alu 1 130 -19 4 1353 255 125 0 0 chr4 100765075 100765115 -54865005 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1353 261 0 0 0 chr4 100765475 100765504 -54864616 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 4 1353 664 212 30 0 chr4 100765504 100765636 -54864484 - RSINE1 SINE B4 -29 136 1 4 1353 252 0 0 0 chr4 100765727 100765755 -54864365 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1353 306 0 0 0 chr4 100765755 100765788 -54864332 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1353 241 318 12 12 chr4 100765811 100765897 -54864223 - RSINE1 SINE B4 -78 87 2 4 1353 23 0 0 0 chr4 100766214 100766237 -54863883 + GC_rich Low_complexity Low_complexity 1 23 0 4 1353 724 216 94 40 chr4 100767103 100767305 -54862815 - B3 SINE B2 -3 213 1 4 1353 793 260 93 42 chr4 100767565 100767802 -54862318 - B4A SINE B4 -43 249 1 4 1353 249 222 53 25 chr4 100768044 100768123 -54861997 + B1_Mur1 SINE Alu 56 144 -5 4 1353 25 65 0 0 chr4 100768327 100768373 -54861747 + AT_rich Low_complexity Low_complexity 1 46 0 4 1353 270 0 0 0 chr4 100768731 100768761 -54861359 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1353 302 232 15 15 chr4 100769006 100769078 -54861042 - ID4_ SINE ID -66 86 15 4 1353 236 258 15 0 chr4 100769501 100769567 -54860553 + ID4 SINE ID 1 67 -16 4 1353 501 17 0 0 chr4 100769633 100769691 -54860429 + (CCA)n Simple_repeat Simple_repeat 1 58 0 4 1353 189 139 0 27 chr4 100770064 100770101 -54860019 + L2b LINE L2 3237 3272 -103 4 1353 1085 223 114 12 chr4 100770595 100770840 -54859280 + MTE2b LTR MaLR 63 332 -47 4 1353 2173 174 37 2 chr4 100770842 100771246 -54858874 + MTC LTR MaLR 4 421 0 4 1353 6234 139 37 61 chr4 100771246 100772440 -54857680 + MTC-int LTR MaLR 1 1165 -93 4 1353 737 196 22 0 chr4 100772452 100772590 -54857530 - B1_Mur3 SINE Alu 0 149 9 4 1353 438 293 56 25 chr4 100772590 100772613 -54857507 - ID_B1 SINE B4 0 224 59 4 1353 303 203 149 0 chr4 100772591 100772665 -54857455 + MTC-int LTR MaLR 1174 1258 0 4 1353 1518 138 171 0 chr4 100772665 100772940 -54857180 + MTC LTR MaLR 1 322 -99 4 1353 272 296 51 0 chr4 100773170 100773268 -54856852 + MamRep137 DNA TcMar? 255 357 -87 4 1353 400 210 192 48 chr4 100773591 100773716 -54856404 - PB1D10 SINE Alu -1 148 6 4 1353 389 205 63 71 chr4 100773956 100774082 -54856038 - RSINE1 SINE B4 0 165 41 5 1353 457 323 44 59 chr4 100774493 100774763 -54855357 + B4A SINE B4 3 268 -24 5 1353 387 0 0 0 chr4 100774825 100774868 -54855252 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1353 513 219 37 28 chr4 100774924 100775032 -54855088 + B1_Mur1 SINE Alu 34 142 -7 5 1353 4853 156 108 63 chr4 100776050 100777106 -54853014 - RLTR25A LTR ERVK 0 1103 1 5 1353 445 321 56 30 chr4 100777610 100777880 -54852240 - L1MA8 LINE L1 -110 6181 5905 5 1353 618 205 0 9 chr4 100778835 100778948 -54851172 - PB1D9 SINE Alu -7 113 2 5 1353 23 33 0 0 chr4 100779445 100779475 -54850645 + AT_rich Low_complexity Low_complexity 1 30 0 5 1353 429 259 219 21 chr4 100780261 100780498 -54849622 - B4A SINE B4 -8 284 1 5 1353 223 327 64 18 chr4 100780642 100780751 -54849369 + L2c LINE L2 3254 3367 -20 5 1353 384 237 10 67 chr4 100780887 100780991 -54849129 + MER53 DNA hAT 95 192 -1 5 1353 657 265 170 32 chr4 100782110 100782363 -54847757 - B4A SINE B4 -4 288 1 5 1353 1994 168 66 8 chr4 100783221 100783599 -54846521 - MTD LTR MaLR 0 419 20 5 1353 236 299 110 45 chr4 100784000 100784154 -54845966 + Charlie10 DNA MER1_type 2063 2226 -596 5 1353 505 261 193 17 chr4 100784402 100784640 -54845480 - L1MD LINE L1 -2865 3281 3002 5 1353 267 309 0 12 chr4 100784645 100784727 -54845393 - ID4_ SINE ID -2 81 1 5 1353 1123 79 33 0 chr4 100784736 100784888 -54845232 - B2_Mm2 SINE B2 -38 157 1 5 1353 314 274 82 41 chr4 100784916 100785038 -54845082 + ID_B1 SINE B4 91 217 -7 5 1353 465 204 83 0 chr4 100784935 100785043 -54845077 + B1F1 SINE Alu 31 147 -2 5 1353 947 211 44 5 chr4 100785132 100785337 -54844783 - B3 SINE B2 -3 213 1 5 1353 378 43 30 60 chr4 100785482 100785582 -54844538 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1353 2229 305 121 20 chr4 100785643 100787918 -54842202 - L1MA4A LINE L1 -129 6027 3480 5 1353 640 209 57 7 chr4 100788929 100789069 -54841051 - B1_Mur2 SINE Alu -1 148 2 5 1353 877 206 38 32 chr4 100789079 100789265 -54840855 - B3 SINE B2 -3 213 27 5 1353 514 103 23 0 chr4 100789265 100789352 -54840768 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 5 1353 1249 42 0 0 chr4 100789355 100789499 -54840621 - B1_Mm SINE Alu -3 144 1 5 1353 412 294 73 104 chr4 100789580 100789704 -54840416 - B4 SINE B4 -8 284 171 5 1353 3573 23 0 0 chr4 100789704 100790100 -54840020 + MTA_Mm LTR MaLR 1 396 0 5 1353 412 294 73 104 chr4 100790100 100790264 -54839856 - B4 SINE B4 -122 170 5 5 1353 1080 78 0 0 chr4 100790332 100790473 -54839647 - B2_Mm2 SINE B2 -54 141 1 5 1353 260 315 112 40 chr4 100792146 100792172 -54837948 - RSINE1 SINE B4 0 165 140 5 1353 615 117 0 0 chr4 100792172 100792266 -54837854 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 1353 260 315 112 40 chr4 100792266 100792293 -54837827 - RSINE1 SINE B4 -26 139 109 5 1353 551 274 25 19 chr4 100792293 100792453 -54837667 - RSINE1 SINE B4 -2 163 3 5 1353 316 272 22 42 chr4 100792453 100792550 -54837570 - B4A SINE B4 -57 108 2 5 1353 434 354 35 78 chr4 100793880 100794162 -54835958 - MER21B LTR ERV1 -186 677 408 5 1354 1940 103 30 77 chr4 100794483 100794820 -54835300 - ORR1A4 LTR MaLR -8 321 1 5 1354 1565 281 226 22 chr4 100794824 100795457 -54834663 - Lx8 LINE L1 -289 7184 6422 5 1354 1668 195 95 16 chr4 100795473 100795843 -54834277 - MTD LTR MaLR -3 416 18 5 1354 1965 122 40 3 chr4 100796232 100796533 -54833587 - RLTR10E LTR ERVK -2 388 1 5 1354 2821 12 95 6 chr4 100796658 100796995 -54833125 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1354 29391 20 1 2 chr4 100796995 100800272 -54829848 - IAPEz-int LTR ERVK 0 6481 3210 5 1354 7726 95 94 21 chr4 100800271 100801488 -54828632 - IAPEz-int LTR ERVK -5168 1313 8 5 1354 2821 12 95 6 chr4 100801488 100801825 -54828295 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1354 366 191 221 11 chr4 100801898 100801993 -54828127 - B3A SINE B2 -83 115 1 5 1354 1020 170 26 11 chr4 100802540 100802730 -54827390 - B2_Mm2 SINE B2 -1 194 2 5 1354 1661 36 0 5 chr4 100802837 100803030 -54827090 - B2_Mm1a SINE B2 0 193 2 5 1354 803 175 7 14 chr4 100803129 100803274 -54826846 - B1_Mur1 SINE Alu -1 148 5 5 1354 793 225 99 5 chr4 100803439 100803631 -54826489 + B3 SINE B2 3 212 -4 5 1354 366 284 34 11 chr4 100804016 100804030 -54826090 - PB1D10 SINE Alu -10 107 17 5 1354 409 203 0 13 chr4 100804030 100804105 -54826015 - ID_B1 SINE B4 -53 171 98 5 1354 374 159 31 164 chr4 100804243 100804371 -54825749 - PB1 SINE Alu -2 125 15 5 1354 273 257 84 2 chr4 100804593 100804678 -54825442 - B4 SINE B4 -8 284 205 5 1354 649 241 29 0 chr4 100804791 100804928 -54825192 + B1F SINE Alu 1 141 -8 5 1354 1259 147 21 99 chr4 100805073 100805315 -54824805 + URR1A DNA MER1_type 2 224 -2 5 1354 233 385 72 0 chr4 100805428 100805649 -54824471 + L2c LINE L2 3055 3291 -96 5 1354 330 204 224 0 chr4 100805892 100805990 -54824130 - PB1D9 SINE Alu 0 120 1 5 1354 430 114 0 25 chr4 100806030 100806111 -54824009 - L1Md_F2 LINE L1 0 6582 6504 5 1354 198 0 0 0 chr4 100806395 100806417 -54823703 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 1354 431 264 91 0 chr4 100807606 100807716 -54822404 - PB1 SINE Alu -7 120 1 5 1354 185 351 0 0 chr4 100809072 100809129 -54820991 + L2a LINE L2 3370 3426 0 5 1354 1506 53 15 31 chr4 100809289 100809484 -54820636 - B2_Mm2 SINE B2 -1 194 3 5 1354 416 266 62 0 chr4 100809968 100810096 -54820024 - B1_Mur3 SINE Alu -12 137 2 5 1354 189 278 18 18 chr4 100810454 100810509 -54819611 - L2 LINE L2 -512 2907 2853 5 1354 943 126 269 0 chr4 100811158 100811333 -54818787 + URR1A DNA MER1_type 5 226 0 5 1354 291 301 0 0 chr4 100811350 100811433 -54818687 + ID4_ SINE ID 1 83 0 5 1354 33 56 0 0 chr4 100811442 100811496 -54818624 + AT_rich Low_complexity Low_complexity 1 54 0 5 1354 255 265 43 14 chr4 100812140 100812209 -54817911 + MER58B DNA MER1_type 271 341 0 5 1354 413 236 52 52 chr4 100812329 100812445 -54817675 - PB1D10 SINE Alu -1 116 1 5 1354 272 297 259 6 chr4 100812473 100812639 -54817481 - MER2 DNA MER2_type -1 344 137 5 1354 819 157 141 28 chr4 100813421 100813598 -54816522 - MTD LTR MaLR 0 419 223 5 1354 183 162 0 0 chr4 100813608 100813645 -54816475 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 1354 566 247 6 0 chr4 100813640 100813818 -54816302 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1354 404 223 52 41 chr4 100813830 100813978 -54816142 - MTD LTR MaLR -260 147 1 5 1354 256 265 13 105 chr4 100814014 100814090 -54816030 - ID4_ SINE ID -82 70 2 5 1354 1157 168 47 28 chr4 100814841 100815056 -54815064 + URR1B DNA MER1_type 7 225 0 5 1354 1133 170 39 20 chr4 100815156 100815360 -54814760 + B3 SINE B2 1 208 -8 5 1354 865 149 28 0 chr4 100815561 100815702 -54814418 - B1_Mus2 SINE Alu -1 146 2 5 1354 531 281 19 44 chr4 100815565 100815725 -54814395 - ID_B1 SINE B4 -5 219 64 5 1354 237 321 95 0 chr4 100816069 100816153 -54813967 - MER20 DNA MER1_type -10 209 118 5 1354 285 263 87 82 chr4 100816437 100816541 -54813579 + L1M4 LINE L1 975 1080 -5462 5 1354 426 39 0 0 chr4 100816541 100816593 -54813527 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1354 285 263 87 82 chr4 100816593 100816613 -54813507 + L1M4 LINE L1 1081 1098 -5444 5 1354 1777 158 84 22 chr4 100816613 100816969 -54813151 + ORR1C1 LTR MaLR 1 378 0 5 1354 285 263 87 82 chr4 100816969 100817038 -54813082 + L1M4 LINE L1 1099 1170 -5372 5 1354 465 222 135 27 chr4 100817417 100817613 -54812507 + L1MB7 LINE L1 5825 6044 -140 5 1354 352 289 154 37 chr4 100817747 100817909 -54812211 - B3A SINE B2 -16 182 2 5 1354 229 281 91 48 chr4 100819126 100819313 -54810807 - L2 LINE L2 -357 3062 2868 5 1354 226 295 11 11 chr4 100819352 100819441 -54810679 - L2 LINE L2 -876 2543 2455 5 1354 264 91 0 0 chr4 100819940 100819984 -54810136 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1354 675 259 23 12 chr4 100820023 100820195 -54809925 - B3A SINE B2 -23 175 2 5 1354 426 205 22 140 chr4 100820210 100820346 -54809774 - PB1D9 SINE Alu 0 120 1 5 1354 342 0 0 0 chr4 100820725 100820763 -54809357 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 5 1354 1842 136 39 3 chr4 100821298 100821608 -54808512 + ORR1A4 LTR MaLR 1 321 -8 5 1354 852 167 53 0 chr4 100821863 100822013 -54808107 - URR1A DNA MER1_type 0 226 69 5 1354 461 318 108 15 chr4 100823707 100823981 -54806139 + MER58B DNA MER1_type 1 316 -25 5 1354 21 0 0 0 chr4 100825633 100825654 -54804466 + AT_rich Low_complexity Low_complexity 1 21 0 5 1354 215 313 71 43 chr4 100826262 100826402 -54803718 + B4A SINE B4 1 144 -148 5 1354 295 266 13 0 chr4 100826960 100827039 -54803081 - B2_Mm2 SINE B2 -113 82 3 5 1354 25 31 0 0 chr4 100829355 100829387 -54800733 + AT_rich Low_complexity Low_complexity 1 32 0 5 1354 691 198 291 14 chr4 100834898 100835180 -54794940 + MTD LTR MaLR 47 406 -13 5 1354 258 274 192 0 chr4 100839519 100839592 -54790528 + B1F1 SINE Alu 2 88 -61 5 1354 190 304 14 0 chr4 100839622 100839691 -54790429 + L2a LINE L2 3307 3376 -50 5 1354 200 250 33 0 chr4 100841839 100841899 -54788221 + MIRc SINE MIR 83 144 -124 5 1354 230 296 11 120 chr4 100842617 100842709 -54787411 + ID4 SINE ID 2 83 0 5 1354 1038 288 122 28 chr4 100844353 100844853 -54785267 + Lx8 LINE L1 6906 7452 -21 5 1354 198 191 0 0 chr4 100844855 100844897 -54785223 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 1354 23 68 0 0 chr4 100844918 100844962 -54785158 + AT_rich Low_complexity Low_complexity 1 44 0 5 1354 654 230 7 0 chr4 100845789 100845924 -54784196 + B1_Mur3 SINE Alu 3 138 -11 5 1354 225 0 0 0 chr4 100845924 100845949 -54784171 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1354 384 200 9 18 chr4 100846388 100846500 -54783620 + GA-rich Low_complexity Low_complexity 4 114 0 6 1354 232 219 27 14 chr4 100848182 100848256 -54781864 - MADE2 DNA Mariner -2 78 4 6 1354 183 122 347 0 chr4 100848263 100848312 -54781808 + MIRm SINE MIR 89 154 -122 6 1354 574 163 0 0 chr4 100848458 100848550 -54781570 - B1_Mus2 SINE Alu 0 147 56 6 1354 318 106 0 0 chr4 100849271 100849318 -54780802 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 6 1354 754 283 16 0 chr4 100849716 100849900 -54780220 - B3A SINE B2 -10 188 2 6 1354 731 258 52 22 chr4 100851282 100851512 -54778608 + MER2 DNA MER2_type 107 343 -2 6 1354 324 243 40 0 chr4 100851660 100851734 -54778386 + ID4 SINE ID 2 78 -5 6 1354 382 225 0 59 chr4 100852726 100852811 -54777309 + ID_B1 SINE B4 99 178 -46 6 1354 579 172 24 142 chr4 100853615 100853784 -54776336 - B1_Mur2 SINE Alu 0 149 1 6 1354 474 229 9 44 chr4 100854211 100854325 -54775795 + PB1D10 SINE Alu 1 110 -7 6 1354 249 33 0 0 chr4 100854733 100854763 -54775357 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 6 1354 270 0 0 0 chr4 100855385 100855415 -54774705 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1354 305 224 153 0 chr4 100855968 100856053 -54774067 - PB1D7 SINE Alu 0 120 23 6 1354 417 39 0 0 chr4 100856336 100856387 -54773733 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1354 223 296 20 20 chr4 100857658 100857758 -54772362 - MIRb SINE MIR -69 199 100 6 1354 244 146 0 0 chr4 100858313 100858354 -54771766 + RMER30 DNA MER1_type 10 50 -152 6 1354 288 338 26 0 chr4 100858347 100858424 -54771696 - Charlie12 DNA MER1_type -2794 79 1 6 1354 270 321 13 13 chr4 100859260 100859339 -54770781 + PB1D10 SINE Alu 1 79 -38 6 1354 513 196 29 0 chr4 100859368 100859470 -54770650 + U6 snRNA snRNA 1 105 -2 6 1354 335 195 129 35 chr4 100859527 100859612 -54770508 - B4A SINE B4 -191 101 9 6 1354 22 0 0 0 chr4 100863374 100863396 -54766724 + AT_rich Low_complexity Low_complexity 1 22 0 6 1354 440 276 60 0 chr4 100863710 100863844 -54766276 + B1F SINE Alu 2 143 -6 6 1354 408 71 0 0 chr4 100865381 100865437 -54764683 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1354 304 306 45 0 chr4 100866259 100866370 -54763750 + PB1D10 SINE Alu 2 117 0 6 1354 507 235 195 32 chr4 100867075 100867260 -54762860 + B3 SINE B2 1 215 -1 6 1354 357 24 0 0 chr4 100867646 100867688 -54762432 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 6 1354 329 301 79 29 chr4 100869324 100869464 -54760656 + B1_Mur2 SINE Alu 3 149 0 6 1354 455 272 66 0 chr4 100870131 100870267 -54759853 + B1F1 SINE Alu 1 145 -4 6 1354 439 258 61 0 chr4 100871092 100871224 -54758896 + B1F2 SINE Alu 2 141 -8 6 1354 283 302 407 11 chr4 100872039 100872227 -54757893 + B4A SINE B4 28 290 -2 6 1354 468 0 0 0 chr4 100872874 100872926 -54757194 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1354 277 238 80 58 chr4 100873136 100873274 -54756846 - MER112 DNA MER1_type -119 142 2 6 1354 213 179 43 29 chr4 100874561 100874630 -54755490 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 6 1354 327 85 0 0 chr4 100875261 100875308 -54754812 + (CACG)n Simple_repeat Simple_repeat 1 47 0 6 1354 331 250 0 0 chr4 100876198 100876266 -54753854 - ID4_ SINE ID -14 69 2 6 1354 324 263 26 0 chr4 100876820 100876896 -54753224 + PB1D10 SINE Alu 3 80 -37 6 1354 216 317 39 10 chr4 100877502 100877604 -54752516 - MIR3 SINE MIR -1 207 103 6 1354 560 111 9 0 chr4 100877712 100877820 -54752300 + (GA)n Simple_repeat Simple_repeat 2 110 0 6 1354 29 0 0 0 chr4 100877828 100877857 -54752263 + AT_rich Low_complexity Low_complexity 1 29 0 6 1354 2528 35 32 3 chr4 100877857 100878171 -54751949 + L1Md_F3 LINE L1 6262 6584 0 6 1354 378 280 0 36 chr4 100878300 100878411 -54751709 - PB1D7 SINE Alu -11 109 3 6 1354 842 258 34 0 chr4 100880490 100880699 -54749421 - B3 SINE B2 0 216 1 6 1354 704 333 28 24 chr4 100880735 100881024 -54749096 + B4A SINE B4 3 292 0 6 1354 324 0 0 0 chr4 100881638 100881674 -54748446 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1354 378 61 0 0 chr4 100881674 100881722 -54748398 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1354 26 0 0 0 chr4 100882827 100882853 -54747267 + AT_rich Low_complexity Low_complexity 1 26 0 6 1354 342 214 0 0 chr4 100883418 100883502 -54746618 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 6 1354 209 203 0 48 chr4 100883812 100883874 -54746246 + (TCTCTG)n Simple_repeat Simple_repeat 1 59 0 6 1354 218 378 12 12 chr4 100884343 100884426 -54745694 + ID4_ SINE ID 1 83 0 6 1354 288 0 0 0 chr4 100884743 100884775 -54745345 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1354 442 46 31 0 chr4 100884775 100884840 -54745280 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1354 312 275 51 76 chr4 100884853 100884971 -54745149 - PB1D7 SINE Alu 0 120 6 6 1354 458 209 199 30 chr4 100885299 100885477 -54744643 - B3A SINE B2 0 195 1 6 1354 254 172 174 51 chr4 100885554 100885652 -54744468 + MT2B LTR ERVL 155 264 -337 6 1354 732 45 179 0 chr4 100885570 100885682 -54744438 + B1_Mus1 SINE Alu 12 143 -5 6 1354 720 204 136 12 chr4 100886032 100886201 -54743919 + B3 SINE B2 1 190 -26 6 1354 230 146 20 20 chr4 100886331 100886380 -54743740 - MIR SINE MIR -148 114 66 6 1354 1359 213 44 60 chr4 100887196 100887560 -54742560 + Lx8 LINE L1 7113 7470 -3 6 1354 1191 210 9 5 chr4 100887591 100887806 -54742314 + B3 SINE B2 1 216 0 6 1354 371 143 0 0 chr4 100888059 100888129 -54741991 - Lx LINE L1 0 6654 6585 6 1354 447 316 124 53 chr4 100890194 100890662 -54739458 + HAL1 LINE L1 1169 1669 -838 6 1354 461 188 62 0 chr4 100890905 100891001 -54739119 + PB1D10 SINE Alu 1 102 -15 6 1354 506 235 20 0 chr4 100891703 100891815 -54738305 + PB1D10 SINE Alu 1 124 -3 6 1354 219 78 59 0 chr4 100892057 100892108 -54738012 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1354 188 333 10 59 chr4 100893264 100893366 -54736754 + MIRc SINE MIR 60 156 -112 6 1354 2446 42 39 0 chr4 100893869 100894175 -54735945 + L1_Mus3 LINE L1 6319 6636 -2 6 1354 464 290 36 0 chr4 100894652 100894790 -54735330 + B1F SINE Alu 1 143 -6 6 1354 747 267 73 24 chr4 100894798 100895044 -54735076 + B4A SINE B4 3 260 -32 6 1354 252 0 0 0 chr4 100895045 100895073 -54735047 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1354 1215 55 0 0 chr4 100895116 100895261 -54734859 - B1_Mm SINE Alu -1 146 2 6 1354 1110 171 36 18 chr4 100896035 100896256 -54733864 - URR1A DNA MER1_type 0 226 2 6 1354 327 122 2 43 chr4 100896809 100896884 -54733236 + B2_Mm2 SINE B2 46 124 -74 6 1354 357 116 0 0 chr4 100896892 100896961 -54733159 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 6 1354 216 0 0 0 chr4 100896961 100896984 -54733136 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 6 1354 253 304 25 0 chr4 100897492 100897571 -54732549 + ID4 SINE ID 3 83 0 6 1354 468 270 99 32 chr4 100898011 100898294 -54731826 - MER20B DNA MER1_type -47 736 435 6 1354 328 293 106 7 chr4 100898357 100898498 -54731622 - MER20B DNA MER1_type -447 336 182 6 1354 325 269 39 111 chr4 100898884 100899064 -54731056 + L1MC1 LINE L1 5991 6157 -176 6 1354 30 45 0 0 chr4 100899570 100899614 -54730506 + AT_rich Low_complexity Low_complexity 1 44 0 6 1354 8864 17 1 0 chr4 100900381 100901358 -54728762 + RLTR13A3 LTR ERVK 1 978 0 6 1354 773 250 78 92 chr4 100902447 100902883 -54727237 - RMER10A LTR ERVL -12 430 1 6 1354 354 248 179 0 chr4 100903086 100903203 -54726917 + RSINE1 SINE B4 11 148 -17 6 1354 414 166 105 0 chr4 100903712 100903808 -54726312 + B3A SINE B2 10 119 -76 6 1354 385 180 11 11 chr4 100903818 100903908 -54726212 + CT-rich Low_complexity Low_complexity 1 90 0 6 1354 662 84 9 0 chr4 100903966 100904073 -54726047 + (CAGG)n Simple_repeat Simple_repeat 2 109 0 6 1354 746 71 8 42 chr4 100904231 100904349 -54725771 - B1_Mur3 SINE Alu -1 148 35 6 1354 2044 146 104 16 chr4 100904799 100905183 -54724937 - MTC LTR MaLR -3 418 1 6 1354 331 211 117 45 chr4 100906012 100906111 -54724009 + PB1D10 SINE Alu 1 108 -41 6 1354 1381 218 73 45 chr4 100906174 100906597 -54723523 - RMER5 LTR ERV1 -87 447 13 6 1354 843 129 0 0 chr4 100907699 100907877 -54722243 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1354 569 291 92 64 chr4 100908572 100908855 -54721265 + B4A SINE B4 1 291 -1 6 1354 396 188 190 33 chr4 100909037 100909158 -54720962 + ID_B1 SINE B4 80 219 -5 6 1354 21 0 0 0 chr4 100909884 100909905 -54720215 + AT_rich Low_complexity Low_complexity 1 21 0 6 1354 365 182 15 0 chr4 100910880 100910946 -54719174 - PB1D10 SINE Alu -49 68 2 6 1354 3488 177 74 8 chr4 100911483 100912131 -54717989 - RMER1A Other Other -5 1025 335 6 1354 1963 248 32 61 chr4 100912129 100913362 -54716758 - RMER1A Other Other -524 506 1 6 1354 432 0 0 0 chr4 100913505 100913553 -54716567 + (ATTTG)n Simple_repeat Simple_repeat 4 51 0 6 1354 235 292 31 10 chr4 100914696 100914793 -54715327 + (TATG)n Simple_repeat Simple_repeat 4 102 0 6 1354 7936 29 8 4 chr4 100915070 100916007 -54714113 + L1Md_F3 LINE L1 5645 6584 0 6 1354 564 200 9 0 chr4 100916369 100916474 -54713646 - B1_Mur1 SINE Alu -35 114 9 6 1354 253 267 10 109 chr4 100916399 100916500 -54713620 - MT2B LTR ERVL -362 239 149 7 1354 628 201 133 118 chr4 100917021 100917224 -54712896 + B3 SINE B2 4 209 -7 7 1354 360 111 0 0 chr4 100917235 100917298 -54712822 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1354 190 291 60 52 chr4 100917444 100917560 -54712560 - MIRc SINE MIR -67 201 82 7 1354 200 259 0 17 chr4 100917853 100917912 -54712208 - MIR SINE MIR -81 181 124 7 1354 855 237 201 44 chr4 100918725 100919158 -54710962 + L1MB2 LINE L1 5659 6159 -12 7 1354 2296 244 65 27 chr4 100920269 100920946 -54709174 + Lx9 LINE L1 6850 7552 -92 7 1354 22 35 0 0 chr4 100921005 100921034 -54709086 + AT_rich Low_complexity Low_complexity 1 29 0 7 1354 294 29 0 0 chr4 100921189 100921224 -54708896 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1354 234 0 0 0 chr4 100921224 100921249 -54708871 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1354 287 276 40 0 chr4 100921260 100921336 -54708784 - ID_B1 SINE B4 -29 195 117 7 1354 285 193 35 0 chr4 100921339 100921396 -54708724 - ID4_ SINE ID -23 60 2 7 1354 198 103 0 0 chr4 100921501 100921530 -54708590 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1354 863 179 0 14 chr4 100921788 100921935 -54708185 + B1_Mur2 SINE Alu 5 149 0 7 1354 474 246 173 6 chr4 100923226 100923273 -54706847 - B4 SINE B4 -93 199 137 7 1354 222 37 0 0 chr4 100923273 100923300 -54706820 + (C)n Simple_repeat Simple_repeat 1 27 0 7 1354 474 246 173 6 chr4 100923300 100923420 -54706700 - B4 SINE B4 -156 136 5 7 1354 1019 197 59 0 chr4 100923529 100923732 -54706388 - B3 SINE B2 0 216 2 7 1354 1039 230 94 56 chr4 100923738 100923868 -54706252 - RCHARR1 DNA MER1_type 0 974 844 7 1354 855 177 43 0 chr4 100923868 100924009 -54706111 - B1_Mur2 SINE Alu 0 149 3 7 1354 1039 230 94 56 chr4 100924009 100924357 -54705763 - RCHARR1 DNA MER1_type -131 843 478 7 1354 394 224 208 0 chr4 100924811 100924936 -54705184 + B3 SINE B2 9 159 -57 7 1354 34 0 0 41 chr4 100924997 100925020 -54705100 + AT_rich Low_complexity Low_complexity 1 23 0 7 1354 1120 91 0 0 chr4 100925020 100925163 -54704957 + B1_Mus2 SINE Alu 2 144 -3 7 1354 231 36 0 0 chr4 100925163 100925191 -54704929 + (TAA)n Simple_repeat Simple_repeat 2 29 0 7 1354 34 0 0 41 chr4 100925191 100925215 -54704905 + AT_rich Low_complexity Low_complexity 1 23 0 7 1354 364 286 11 21 chr4 100925262 100925355 -54704765 + PB1D10 SINE Alu 2 93 -24 7 1355 182 135 39 0 chr4 100925804 100925856 -54704264 + T-rich Low_complexity Low_complexity 1 54 0 7 1355 335 248 213 140 chr4 100925882 100926154 -54703966 + B4A SINE B4 1 292 0 7 1355 190 263 19 0 chr4 100927676 100927745 -54702375 + L2c LINE L2 2991 3064 -323 7 1355 285 277 0 67 chr4 100927759 100927841 -54702279 - B4A SINE B4 0 292 217 7 1355 234 0 0 0 chr4 100927841 100927867 -54702253 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1355 438 125 250 0 chr4 100927876 100927972 -54702148 - RSINE1 SINE B4 -34 131 12 7 1355 207 0 0 0 chr4 100928757 100928780 -54701340 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1355 408 266 168 5 chr4 100929282 100929467 -54700653 + B3 SINE B2 2 216 0 7 1355 225 0 0 0 chr4 100929561 100929586 -54700534 + (CTTG)n Simple_repeat Simple_repeat 3 27 0 7 1355 492 246 56 0 chr4 100929587 100929713 -54700407 - ID_B1 SINE B4 -8 216 84 7 1355 665 202 101 53 chr4 100930595 100930783 -54699337 + B3A SINE B2 2 198 0 7 1355 234 333 0 0 chr4 100931959 100932025 -54698095 + AluF_3 SINE Alu 147 212 -99 7 1355 802 239 70 152 chr4 100932084 100932196 -54697924 - B4 SINE B4 0 292 204 7 1355 574 153 76 59 chr4 100932196 100932314 -54697806 + PB1D9 SINE Alu 1 120 0 7 1355 802 239 70 152 chr4 100932314 100932326 -54697794 - B4 SINE B4 -89 203 203 7 1355 180 0 0 0 chr4 100932326 100932346 -54697774 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 7 1355 802 239 70 152 chr4 100932346 100932536 -54697584 - B4 SINE B4 -89 203 3 7 1355 458 219 121 8 chr4 100933124 100933248 -54696872 + B1F SINE Alu 10 147 -2 7 1355 285 289 0 93 chr4 100933697 100933805 -54696315 - PB1 SINE Alu -20 107 2 7 1355 378 42 0 0 chr4 100934140 100934188 -54695932 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1355 460 287 57 13 chr4 100934515 100934674 -54695446 - MER20 DNA MER1_type -18 201 36 7 1355 773 151 202 22 chr4 100934882 100935065 -54695055 - B3 SINE B2 0 216 1 7 1355 22 0 0 0 chr4 100935066 100935088 -54695032 + AT_rich Low_complexity Low_complexity 1 22 0 7 1355 945 62 85 0 chr4 100935114 100935243 -54694877 + B1_Mus1 SINE Alu 4 143 -5 7 1355 495 0 0 0 chr4 100935246 100935301 -54694819 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1355 26 64 0 0 chr4 100937543 100937590 -54692530 + GC_rich Low_complexity Low_complexity 1 47 0 7 1355 402 176 0 14 chr4 100938064 100938133 -54691987 + B1_Mur3 SINE Alu 1 68 -81 7 1355 546 119 0 0 chr4 100938184 100938268 -54691852 + (GGGGA)n Simple_repeat Simple_repeat 4 87 0 7 1355 1076 257 49 16 chr4 100938420 100938725 -54691395 - MTE2b LTR MaLR -6 373 59 7 1355 331 171 171 0 chr4 100938811 100938893 -54691227 - MTE2b LTR MaLR -281 98 3 7 1355 2533 134 0 5 chr4 100939180 100939562 -54690558 - RLTR14 LTR ERV1 -2 380 1 7 1355 1056 255 119 21 chr4 100939578 100939836 -54690284 + RCHARR1 DNA MER1_type 43 321 -653 7 1355 204 67 0 0 chr4 100939836 100939866 -54690254 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 7 1355 1056 255 119 21 chr4 100939866 100940028 -54690092 + RCHARR1 DNA MER1_type 322 504 -470 7 1355 411 318 8 15 chr4 100940039 100940170 -54689950 + RSINE1 SINE B4 36 165 0 7 1355 25 31 0 0 chr4 100940170 100940202 -54689918 + AT_rich Low_complexity Low_complexity 1 32 0 7 1355 879 257 56 21 chr4 100940202 100940473 -54689647 + RCHARR1 DNA MER1_type 483 763 -211 7 1355 1633 212 74 0 chr4 100940473 100940850 -54689270 + MTD LTR MaLR 1 405 -14 7 1355 21 36 0 0 chr4 100940879 100940907 -54689213 + AT_rich Low_complexity Low_complexity 1 28 0 7 1355 1405 120 13 4 chr4 100940961 100941187 -54688933 - Lx2 LINE L1 0 6997 6770 7 1355 5639 104 15 10 chr4 100941187 100942009 -54688111 - Lx2 LINE L1 -357 6640 5815 7 1355 954 81 16 0 chr4 100942009 100942133 -54687987 - MusHAL1 LINE L1 -1694 1018 893 7 1355 784 103 188 40 chr4 100942124 100942326 -54687794 + MusHAL1 LINE L1 676 907 -1805 7 1355 450 49 0 0 chr4 100942365 100942426 -54687694 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 7 1355 758 200 130 10 chr4 100942508 100942700 -54687420 + B3 SINE B2 2 216 0 7 1355 708 185 94 22 chr4 100942756 100942894 -54687226 + B1_Mur3 SINE Alu 2 149 0 7 1355 657 215 15 7 chr4 100943772 100943908 -54686212 + U1 snRNA snRNA 23 159 -6 7 1355 285 29 0 0 chr4 100943949 100943983 -54686137 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 7 1355 572 191 45 0 chr4 100943988 100944098 -54686022 - B1_Mur1 SINE Alu -20 129 15 7 1355 241 319 52 26 chr4 100943996 100944112 -54686008 - ID_B1 SINE B4 -25 199 81 7 1355 319 348 25 0 chr4 100944158 100944276 -54685844 - Lx8 LINE L1 -146 7327 7207 7 1355 802 216 11 21 chr4 100944420 100944641 -54685479 - MTEa LTR MaLR -1 378 178 7 1355 303 167 17 66 chr4 100944623 100944810 -54685310 - MTEb LTR MaLR -102 277 153 7 1355 278 168 11 71 chr4 100944798 100944906 -54685214 - MTEb LTR MaLR -89 290 153 7 1355 278 177 14 70 chr4 100944894 100944993 -54685127 - MTEb LTR MaLR -89 290 190 7 1355 295 150 14 70 chr4 100944990 100945089 -54685031 - MTE2b LTR MaLR -89 290 190 7 1355 314 136 0 48 chr4 100945075 100945137 -54684983 - MTE2b LTR MaLR -131 248 190 7 1355 603 192 46 45 chr4 100945108 100945314 -54684806 - MTE2b LTR MaLR -113 266 96 7 1355 1142 167 14 23 chr4 100945316 100945531 -54684589 + URR1B DNA MER1_type 1 213 -12 7 1355 292 211 84 0 chr4 100945623 100945694 -54684426 - MTE2b LTR MaLR -289 90 14 7 1355 340 281 52 0 chr4 100946061 100946157 -54683963 - MER20 DNA MER1_type -102 117 17 7 1355 1048 207 5 37 chr4 100946459 100946675 -54683445 + B3 SINE B2 2 210 -6 7 1355 1092 203 9 19 chr4 100947677 100947888 -54682232 + B3 SINE B2 1 209 -7 7 1355 2262 147 36 10 chr4 100947937 100948322 -54681798 + MTC LTR MaLR 3 397 -24 7 1355 363 310 16 41 chr4 100948338 100948459 -54681661 - B4A SINE B4 -173 119 2 7 1355 276 53 0 0 chr4 100948466 100948504 -54681616 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1355 209 227 0 0 chr4 100948854 100948898 -54681222 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1355 1141 68 7 0 chr4 100948998 100949144 -54680976 + B1_Mm SINE Alu 1 147 0 7 1355 21 0 0 0 chr4 100949146 100949167 -54680953 + AT_rich Low_complexity Low_complexity 1 21 0 7 1355 213 344 92 148 chr4 100949655 100949938 -54680182 + B4A SINE B4 26 292 0 7 1355 221 218 11 152 chr4 100950189 100950281 -54679839 - B3A SINE B2 -118 80 2 7 1355 1360 70 5 31 chr4 100951049 100951240 -54678880 + B2_Mm2 SINE B2 2 187 -8 7 1355 194 250 29 29 chr4 100951430 100951500 -54678620 + MIR SINE MIR 129 198 -64 7 1355 234 0 0 0 chr4 100951610 100951636 -54678484 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1355 180 0 0 0 chr4 100952342 100952362 -54677758 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1355 581 269 15 76 chr4 100952846 100953043 -54677077 - ORR1E LTR MaLR -174 185 1 7 1355 983 225 33 23 chr4 100953153 100953367 -54676753 - B3 SINE B2 0 216 1 7 1355 793 240 20 5 chr4 100953400 100953601 -54676519 - MER2 DNA MER2_type 0 345 142 7 1355 210 118 0 0 chr4 100953732 100953766 -54676354 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1355 464 217 93 47 chr4 100953834 100953984 -54676136 - B4A SINE B4 -12 280 124 7 1355 235 98 0 0 chr4 100954070 100954111 -54676009 + B1_Mus2 SINE Alu 101 141 -6 7 1355 216 0 0 0 chr4 100954116 100954140 -54675980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1355 235 242 253 0 chr4 100954773 100954864 -54675256 - MIRc SINE MIR -151 117 4 7 1355 446 120 0 13 chr4 100955455 100955531 -54674589 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 7 1355 303 244 0 24 chr4 100955539 100955623 -54674497 + CT-rich Low_complexity Low_complexity 3 84 0 7 1355 802 118 15 23 chr4 100955775 100955905 -54674215 + B1_Mus2 SINE Alu 18 146 -1 8 1355 194 62 0 30 chr4 100956012 100956045 -54674075 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 8 1355 359 222 144 0 chr4 100957670 100957760 -54672360 + MLT1B LTR MaLR 247 349 -41 8 1355 336 292 48 55 chr4 100957871 100958016 -54672104 - L1MB4 LINE L1 -5863 744 601 8 1355 1204 181 26 0 chr4 100958093 100958320 -54671800 - Lx2 LINE L1 -1 6996 6764 8 1355 658 85 9 19 chr4 100958527 100958635 -54671485 + (TCTCCC)n Simple_repeat Simple_repeat 6 112 0 8 1355 213 65 0 0 chr4 100958636 100958667 -54671453 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1355 269 297 161 18 chr4 100958799 100958928 -54671192 + B3A SINE B2 2 154 -44 8 1355 435 38 0 0 chr4 100958928 100958981 -54671139 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1355 269 297 161 18 chr4 100958981 100959019 -54671101 + B3A SINE B2 155 193 -5 8 1355 652 148 114 30 chr4 100959025 100959157 -54670963 + B1_Mus2 SINE Alu 5 147 0 8 1355 221 123 86 17 chr4 100959157 100959215 -54670905 + A-rich Low_complexity Low_complexity 4 65 0 8 1355 349 222 143 13 chr4 100959215 100959335 -54670785 - L1MB4 LINE L1 -5448 1301 1188 8 1355 28 0 0 0 chr4 100959456 100959484 -54670636 + AT_rich Low_complexity Low_complexity 1 28 0 8 1355 438 313 119 43 chr4 100959490 100960138 -54669982 + L1M3 LINE L1 4076 4810 -1336 8 1355 245 267 206 24 chr4 100960125 100960290 -54669830 + L1M3 LINE L1 4757 4951 -1189 8 1355 474 306 0 0 chr4 100960291 100960399 -54669721 + RSINE1 SINE B4 30 137 -28 8 1355 341 236 0 0 chr4 100960455 100960527 -54669593 + L1M3 LINE L1 4944 5015 -1131 8 1355 674 269 35 44 chr4 100960558 100960784 -54669336 - L1MB4 LINE L1 -5789 818 595 8 1355 252 0 0 0 chr4 100960787 100960815 -54669305 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1355 520 348 22 22 chr4 100960947 100961223 -54668897 - B4A SINE B4 -16 276 1 8 1355 391 211 204 6 chr4 100961225 100961387 -54668733 + L1M4 LINE L1 5080 5273 -873 8 1355 204 258 43 72 chr4 100961726 100961864 -54668256 + MIRc SINE MIR 115 248 -20 8 1355 21 0 0 0 chr4 100962574 100962595 -54667525 + AT_rich Low_complexity Low_complexity 1 21 0 8 1355 674 247 18 37 chr4 100962605 100962769 -54667351 + RSINE1 SINE B4 5 165 0 8 1355 256 169 26 0 chr4 100962782 100962859 -54667261 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1355 26 64 0 0 chr4 100962861 100962908 -54667212 + AT_rich Low_complexity Low_complexity 1 47 0 8 1355 280 282 210 0 chr4 100962913 100963037 -54667083 + B3 SINE B2 1 150 -66 8 1355 665 109 9 18 chr4 100963071 100963183 -54666937 - B1_Mus1 SINE Alu -1 147 37 8 1355 224 260 123 0 chr4 100963458 100963531 -54666589 - ID4 SINE ID 0 83 2 8 1355 341 207 0 11 chr4 100963534 100963622 -54666498 + T-rich Low_complexity Low_complexity 5 91 0 8 1355 265 162 51 51 chr4 100965238 100965316 -54664804 - B1F SINE Alu -52 97 20 8 1355 1064 150 22 0 chr4 100966905 100967085 -54663035 + B2_Mm2 SINE B2 2 185 -10 8 1355 233 243 42 142 chr4 100967195 100967315 -54662805 + B2_Mm2 SINE B2 70 177 -18 8 1355 529 229 28 35 chr4 100967328 100967342 -54662778 + ID_B1 SINE B4 78 217 -3 8 1355 612 160 55 16 chr4 100967342 100967469 -54662651 + B1_Mur1 SINE Alu 11 142 -7 8 1355 424 352 93 12 chr4 100967761 100968008 -54662112 + L1M5 LINE L1 5314 5580 -660 8 1355 292 214 84 14 chr4 100968008 100968079 -54662041 + ID4_ SINE ID 6 81 -2 8 1355 209 200 25 0 chr4 100968080 100968120 -54662000 + GA-rich Low_complexity Low_complexity 2 42 0 8 1355 284 292 79 21 chr4 100968130 100968270 -54661850 + L1M5 LINE L1 5694 5841 -399 8 1355 399 195 11 0 chr4 100968521 100968608 -54661512 - RLTR28 LTR ERVL -2 522 435 8 1355 319 224 13 13 chr4 100968593 100968670 -54661450 - RLTR28 LTR ERVL -404 77 1 8 1355 475 206 130 9 chr4 100968858 100968966 -54661154 - RSINE1 SINE B4 -43 122 2 8 1355 1048 222 17 76 chr4 100969442 100969743 -54660377 - RMER19B LTR ERVK -648 254 1 8 1355 539 270 134 11 chr4 100970910 100971097 -54659023 + B3 SINE B2 1 210 -6 8 1355 25 0 0 0 chr4 100971186 100971211 -54658909 + GC_rich Low_complexity Low_complexity 1 25 0 8 1355 206 328 155 5 chr4 100971392 100971585 -54658535 - MIR SINE MIR -21 241 20 8 1355 243 0 0 0 chr4 100971597 100971624 -54658496 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1355 532 250 83 0 chr4 100971651 100971783 -54658337 - ID_B1 SINE B4 0 224 82 8 1355 921 149 213 0 chr4 100972164 100972338 -54657782 - B3 SINE B2 -2 214 4 8 1355 1031 137 128 30 chr4 100972430 100972633 -54657487 - URR1A DNA MER1_type -3 223 1 8 1355 383 283 98 22 chr4 100972731 100972915 -54657205 + MLT1F1 LTR MaLR 259 456 -113 8 1355 255 271 0 0 chr4 100972921 100972980 -54657140 + B3A SINE B2 98 156 -42 8 1355 207 0 0 0 chr4 100972983 100973006 -54657114 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1355 540 81 0 0 chr4 100973022 100973096 -54657024 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1355 593 296 62 12 chr4 100973856 100974112 -54656008 + B4A SINE B4 1 269 -23 8 1355 306 50 0 0 chr4 100974158 100974198 -54655922 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1355 249 33 0 0 chr4 100974714 100974744 -54655376 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1355 387 266 50 43 chr4 100974929 100975090 -54655030 + RSINE1 SINE B4 3 164 -1 8 1355 491 0 17 0 chr4 100975091 100975150 -54654970 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1355 354 45 0 0 chr4 100975150 100975193 -54654927 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1355 1136 210 3 94 chr4 100975312 100975484 -54654636 + MT2B LTR ERVL 254 406 -195 8 1355 288 0 0 0 chr4 100975484 100975516 -54654604 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1355 1136 210 3 94 chr4 100975516 100975663 -54654457 + MT2B LTR ERVL 407 544 -57 8 1355 309 209 238 17 chr4 100975659 100975765 -54654355 + B3 SINE B2 87 203 -13 8 1355 238 338 0 0 chr4 100975800 100975871 -54654249 + B4A SINE B4 129 199 -93 8 1355 306 0 0 0 chr4 100975873 100975907 -54654213 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 8 1355 234 317 90 56 chr4 100975915 100976182 -54653938 + B4A SINE B4 2 277 -15 8 1355 247 158 0 146 chr4 100976260 100976349 -54653771 + B4A SINE B4 216 291 -1 8 1355 462 279 7 33 chr4 100976916 100977068 -54653052 + B1F1 SINE Alu 2 149 0 8 1355 310 345 97 13 chr4 100977119 100977357 -54652763 - LTR33 LTR ERVL 0 515 258 8 1355 228 163 0 0 chr4 100977423 100977466 -54652654 + CT-rich Low_complexity Low_complexity 3 45 0 8 1355 312 267 0 0 chr4 100978298 100978418 -54651702 + (TG)n Simple_repeat Simple_repeat 1 120 0 8 1355 642 128 0 100 chr4 100978477 100978677 -54651443 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1355 444 228 140 0 chr4 100978712 100978826 -54651294 - RSINE1 SINE B4 -25 140 11 8 1355 2161 169 76 17 chr4 100979941 100980319 -54649801 + RLTR16 LTR ERVK 7 398 -107 8 1355 396 40 0 0 chr4 100980319 100980369 -54649751 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1355 2161 169 76 17 chr4 100980369 100980461 -54649659 + RLTR16 LTR ERVK 399 504 -1 8 1355 588 228 106 94 chr4 100980557 100980896 -54649224 - L1ME2 LINE L1 -130 6034 5692 8 1355 395 254 121 15 chr4 100980897 100981029 -54649091 - B1F SINE Alu -1 148 3 8 1355 855 299 115 6 chr4 100981037 100981403 -54648717 - L1M4 LINE L1 -475 5703 5298 8 1355 234 0 0 0 chr4 100981578 100981604 -54648516 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1355 518 249 31 117 chr4 100982879 100983075 -54647045 - RMER12 LTR ERVK 0 1322 1144 8 1355 3582 219 108 46 chr4 100983148 100983535 -54646585 - RMER12 LTR ERVK -85 1237 769 8 1355 243 0 0 0 chr4 100983535 100983562 -54646558 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 8 1355 3582 219 108 46 chr4 100983562 100984339 -54645781 - RMER12 LTR ERVK -554 768 2 8 1355 458 217 9 36 chr4 100984309 100984419 -54645701 - PB1D10 SINE Alu 0 117 11 8 1355 1209 228 52 65 chr4 100984633 100985017 -54645103 - MTE2a LTR MaLR 0 379 1 8 1355 487 132 14 72 chr4 100985222 100985481 -54644639 + GA-rich Low_complexity Low_complexity 1 244 0 8 1355 493 135 23 54 chr4 100985519 100985912 -54644208 + GA-rich Low_complexity Low_complexity 1 380 0 8 1355 498 137 23 51 chr4 100985950 100986127 -54643993 + GA-rich Low_complexity Low_complexity 5 176 0 8 1355 525 182 23 34 chr4 100986167 100987055 -54643065 + GA-rich Low_complexity Low_complexity 1 877 0 8 1355 348 165 17 61 chr4 100987074 100987255 -54642865 + GA-rich Low_complexity Low_complexity 4 176 0 8 1355 453 211 15 45 chr4 100987761 100987895 -54642225 - B4A SINE B4 0 292 163 8 1355 561 68 0 0 chr4 100987953 100988027 -54642093 + (GGAAA)n Simple_repeat Simple_repeat 3 76 0 8 1355 247 309 143 7 chr4 100988066 100988206 -54641914 + L1MC4 LINE L1 7512 7670 -372 8 1355 22 35 0 0 chr4 100988398 100988427 -54641693 + AT_rich Low_complexity Low_complexity 1 29 0 8 1355 4192 134 29 4 chr4 100989209 100989892 -54640228 - L1_Mur2 LINE L1 -358 5519 4820 8 1355 956 221 33 5 chr4 100990116 100990330 -54639790 - MTD LTR MaLR 0 419 200 8 1355 306 152 394 0 chr4 100990330 100990429 -54639691 + URR1B DNA MER1_type 2 139 -86 8 1355 886 196 11 11 chr4 100991514 100991689 -54638431 + B3A SINE B2 2 176 -22 8 1355 434 266 8 8 chr4 100991864 100991993 -54638127 + L1MB3 LINE L1 6035 6163 -20 8 1355 596 277 25 12 chr4 100992786 100992947 -54637173 + RSINE1 SINE B4 2 164 -1 8 1355 186 189 0 0 chr4 100993021 100993058 -54637062 + GA-rich Low_complexity Low_complexity 2 38 0 8 1355 474 161 42 21 chr4 100993064 100993159 -54636961 + B1_Mur1 SINE Alu 40 136 -13 8 1355 201 74 0 0 chr4 100993161 100993188 -54636932 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1355 540 0 0 0 chr4 100993190 100993250 -54636870 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 8 1355 780 244 9 45 chr4 100993271 100993494 -54636626 + B3 SINE B2 2 216 0 8 1355 538 271 46 7 chr4 100993519 100993655 -54636465 + RSINE1 SINE B4 8 149 -16 8 1355 198 0 0 0 chr4 100993655 100993677 -54636443 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1355 538 271 46 7 chr4 100993677 100993692 -54636428 + RSINE1 SINE B4 150 164 -1 8 1355 263 132 0 36 chr4 100994122 100994148 -54635972 + polypyrimidine Low_complexity Low_complexity 30 54 0 8 1355 2430 87 12 0 chr4 100994148 100994471 -54635649 - ORR1A2 LTR MaLR 0 327 1 8 1355 263 132 0 36 chr4 100994471 100994499 -54635621 + polypyrimidine Low_complexity Low_complexity 2 29 0 8 1355 563 224 59 7 chr4 100994744 100994879 -54635241 - B1_Mur2 SINE Alu -7 142 1 8 1355 1769 252 34 39 chr4 100994910 100995446 -54634674 - Lx8 LINE L1 -5 7468 6936 9 1355 392 301 26 17 chr4 100995589 100995704 -54634416 - B3A SINE B2 -69 129 14 9 1355 189 0 0 0 chr4 100995925 100995946 -54634174 + (TTCTC)n Simple_repeat Simple_repeat 1 21 0 9 1355 1401 56 0 0 chr4 100995949 100996128 -54633992 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 9 1355 657 0 0 0 chr4 100996128 100996201 -54633919 + (TTCCC)n Simple_repeat Simple_repeat 3 75 0 9 1355 218 200 45 15 chr4 100996201 100996267 -54633853 + CT-rich Low_complexity Low_complexity 2 69 0 9 1355 193 232 29 0 chr4 100996447 100996516 -54633604 + CT-rich Low_complexity Low_complexity 5 75 0 9 1355 964 127 6 6 chr4 100996516 100996682 -54633438 + (TCC)n Simple_repeat Simple_repeat 1 166 0 9 1355 386 291 68 0 chr4 100997210 100997358 -54632762 - MLT1D LTR MaLR -64 441 284 9 1355 528 217 66 8 chr4 100997371 100997492 -54632628 + B3 SINE B2 83 210 -6 9 1355 510 208 0 0 chr4 100997775 100997929 -54632191 + (CA)n Simple_repeat Simple_repeat 1 154 0 9 1355 222 340 0 0 chr4 100997931 100998025 -54632095 + (CATA)n Simple_repeat Simple_repeat 1 94 0 9 1355 480 126 0 0 chr4 100998027 100998114 -54632006 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1355 934 206 15 44 chr4 100998767 100998970 -54631150 - B3A SINE B2 0 198 2 9 1355 294 261 0 0 chr4 100999041 100999110 -54631010 + ID4 SINE ID 3 71 -12 9 1355 291 253 12 24 chr4 100999422 100999507 -54630613 + L1MD2 LINE L1 5847 5930 -429 9 1355 523 214 0 10 chr4 100999507 100999611 -54630509 - PB1D10 SINE Alu -4 113 11 9 1355 767 147 0 0 chr4 100999676 100999792 -54630328 + PB1D9 SINE Alu 2 117 -3 9 1355 213 333 17 85 chr4 100999809 100999927 -54630193 - PB1 SINE Alu -17 110 1 9 1355 1111 101 130 0 chr4 101000001 101000170 -54629950 - URR1A DNA MER1_type -22 204 14 1 1355 905 155 86 27 chr4 101000417 101000603 -54629517 + ORR1D1 LTR MaLR 167 363 -11 2 1355 1317 247 121 14 chr4 101001570 101001935 -54628185 + MTD LTR MaLR 8 411 -8 3 1355 556 220 97 15 chr4 101002274 101002408 -54627712 - B1_Mur3 SINE Alu 0 149 5 4 1355 331 271 84 0 chr4 101002490 101002597 -54627523 - PB1D10 SINE Alu -1 116 1 5 1355 630 281 128 16 chr4 101002600 101002694 -54627426 - L1M2 LINE L1 -687 5604 5507 6 1355 1995 167 77 0 chr4 101002694 101003060 -54627060 + ORR1B1 LTR MaLR 1 394 0 7 1355 630 281 123 15 chr4 101003060 101003289 -54626831 - L1M2 LINE L1 -785 5506 5239 6 1355 263 281 45 83 chr4 101003432 101003564 -54626556 - ID_B1 SINE B4 -46 178 52 8 1355 230 312 0 0 chr4 101003599 101003663 -54626457 + PB1D10 SINE Alu 34 97 -20 9 1355 382 264 35 43 chr4 101004193 101004308 -54625812 + RSINE1 SINE B4 11 124 -41 1 1355 27 0 0 0 chr4 101004355 101004382 -54625738 + AT_rich Low_complexity Low_complexity 1 27 0 1 1355 836 184 241 0 chr4 101004382 101004556 -54625564 - B3 SINE B2 0 216 1 1 1355 344 219 73 0 chr4 101004667 101004831 -54625289 + (CATA)n Simple_repeat Simple_repeat 3 178 0 1 1355 354 303 8 209 chr4 101005328 101005467 -54624653 + PB1 SINE Alu 1 111 -16 1 1355 270 132 0 0 chr4 101005535 101005588 -54624532 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1355 203 179 0 0 chr4 101006427 101006466 -54623654 + T-rich Low_complexity Low_complexity 1 39 0 1 1355 850 176 7 0 chr4 101006471 101006619 -54623501 - B1_Mur3 SINE Alu 0 149 1 1 1355 581 285 102 12 chr4 101006923 101007090 -54623030 - ID_B1 SINE B4 -32 192 11 1 1355 410 327 123 45 chr4 101007296 101007565 -54622555 + B4 SINE B4 3 292 0 1 1355 1116 221 134 6 chr4 101007637 101007789 -54622331 + ORR1D2 LTR MaLR 1 175 -195 2 1355 315 0 0 0 chr4 101007789 101007824 -54622296 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1355 1116 221 134 6 chr4 101007824 101007999 -54622121 + ORR1D2 LTR MaLR 176 369 -1 2 1355 1379 122 56 0 chr4 101008057 101008271 -54621849 + URR1A DNA MER1_type 1 226 0 2 1355 629 255 25 0 chr4 101008417 101008574 -54621546 - RSINE1 SINE B4 -2 163 3 2 1355 190 294 59 0 chr4 101009703 101009771 -54620349 - L2c LINE L2 -35 3352 3281 2 1355 315 0 0 0 chr4 101009897 101009932 -54620188 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1355 247 324 0 0 chr4 101010127 101010198 -54619922 + ID4_ SINE ID 11 81 -2 2 1355 553 217 0 9 chr4 101010285 101010392 -54619728 + B1_Mur2 SINE Alu 42 147 -2 2 1355 299 272 203 34 chr4 101010399 101010517 -54619603 + RSINE1 SINE B4 11 148 -17 2 1355 440 232 71 9 chr4 101010573 101010686 -54619434 - PB1D9 SINE Alu 0 120 1 2 1355 353 234 192 81 chr4 101010711 101010883 -54619237 + ID_B1 SINE B4 3 193 -31 3 1355 851 169 14 0 chr4 101011299 101011447 -54618673 + B1_Mur4 SINE Alu 1 150 0 3 1355 207 176 0 0 chr4 101012508 101012542 -54617578 + CT-rich Low_complexity Low_complexity 3 36 0 3 1355 471 206 39 0 chr4 101012555 101012657 -54617463 - PB1D9 SINE Alu -12 108 3 3 1355 445 253 245 30 chr4 101012662 101012990 -54617130 - L1MC3 LINE L1 -314 7681 7072 3 1355 263 268 158 0 chr4 101013015 101013097 -54617023 + PB1D7 SINE Alu 1 95 -25 3 1355 684 205 161 10 chr4 101013117 101013309 -54616811 + ID_B1 SINE B4 2 222 -2 3 1355 698 215 208 6 chr4 101013619 101013797 -54616323 - B3 SINE B2 0 216 3 3 1355 532 151 120 19 chr4 101014487 101014595 -54615525 + PB1D9 SINE Alu 1 119 -1 3 1355 471 206 54 36 chr4 101014889 101015000 -54615120 - RSINE1 SINE B4 -41 124 12 3 1355 737 248 211 20 chr4 101015355 101015806 -54614314 - L1MB2 LINE L1 -2 6178 5642 4 1355 1241 54 0 0 chr4 101015911 101016058 -54614062 + B1_Mus2 SINE Alu 1 147 0 4 1355 222 91 18 35 chr4 101016063 101016120 -54614000 + (CAAAAA)n Simple_repeat Simple_repeat 4 59 0 4 1355 515 189 88 102 chr4 101016179 101016326 -54613794 - B1F2 SINE Alu 0 149 5 4 1355 1076 214 162 83 chr4 101016454 101016805 -54613315 + MTE2a LTR MaLR 1 379 0 4 1355 6536 65 8 21 chr4 101017251 101018117 -54612003 - RLTR13A LTR ERVK 0 855 1 4 1355 773 251 111 27 chr4 101018637 101018899 -54611221 - B4 SINE B4 -8 284 1 4 1355 324 0 0 0 chr4 101019802 101019838 -54610282 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1355 270 0 0 0 chr4 101019838 101019867 -54610253 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1355 465 196 31 0 chr4 101020020 101020117 -54610003 + PB1D9 SINE Alu 1 100 -20 4 1355 667 282 0 19 chr4 101020415 101020564 -54609556 + B3 SINE B2 4 150 -66 5 1355 419 100 0 14 chr4 101020564 101020635 -54609485 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1355 556 310 42 26 chr4 101020635 101020664 -54609456 + B3A SINE B2 154 186 -12 5 1355 806 178 20 0 chr4 101020664 101020810 -54609310 + B1_Mur2 SINE Alu 1 149 0 5 1355 556 249 43 117 chr4 101020810 101020844 -54609276 + B3A SINE B2 171 195 -3 5 1355 22 70 0 0 chr4 101021236 101021279 -54608841 + AT_rich Low_complexity Low_complexity 1 43 0 5 1355 200 155 16 49 chr4 101021335 101021396 -54608724 + (TAA)n Simple_repeat Simple_repeat 3 61 0 5 1355 790 173 23 0 chr4 101021397 101021530 -54608590 - B1_Mus1 SINE Alu -12 136 1 5 1355 370 286 61 18 chr4 101021617 101021653 -54608467 + B4 SINE B4 49 89 -203 5 1355 433 161 37 0 chr4 101021653 101021734 -54608386 + B1_Mur3 SINE Alu 2 85 -64 5 1355 862 98 16 0 chr4 101022428 101022550 -54607570 + B1_Mus2 SINE Alu 23 146 -1 5 1355 506 250 56 28 chr4 101022584 101022728 -54607392 + B1F SINE Alu 1 148 -1 5 1355 264 59 0 0 chr4 101022739 101022773 -54607347 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1355 493 235 98 8 chr4 101023537 101023670 -54606450 + RSINE1 SINE B4 2 146 -19 6 1355 288 0 0 0 chr4 101023673 101023705 -54606415 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1355 326 354 15 30 chr4 101024001 101024016 -54606104 + ID SINE ID 70 82 -142 6 1355 491 313 23 0 chr4 101024016 101024147 -54605973 + B1F1 SINE Alu 2 135 -14 6 1355 486 0 0 0 chr4 101024157 101024211 -54605909 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1355 939 162 155 11 chr4 101024215 101024402 -54605718 + B3 SINE B2 3 216 0 6 1355 354 233 14 0 chr4 101024520 101024593 -54605527 + PB1D10 SINE Alu 23 96 -21 6 1355 290 268 130 30 chr4 101025125 101025225 -54604895 + MT2B LTR ERVL 169 278 -323 6 1355 714 144 27 0 chr4 101025139 101025250 -54604870 + B1_Mur1 SINE Alu 35 148 -1 6 1355 363 258 73 66 chr4 101025633 101025670 -54604450 - ID_B1 SINE B4 -8 216 82 7 1355 705 103 0 0 chr4 101025670 101025767 -54604353 - B1_Mus1 SINE Alu -51 97 1 7 1355 234 274 0 10 chr4 101025680 101025783 -54604337 - ORR1B1-int LTR MaLR -776 733 632 7 1355 851 195 0 0 chr4 101025794 101025943 -54604177 + B1_Mur3 SINE Alu 1 149 0 7 1355 338 250 52 52 chr4 101025972 101026107 -54604013 - Charlie5 DNA MER1_type -166 2458 2324 7 1355 396 138 0 0 chr4 101026112 101026177 -54603943 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1355 371 175 204 58 chr4 101026532 101026606 -54603514 + B1_Mur2 SINE Alu 1 89 -60 7 1355 949 65 26 6 chr4 101026606 101026762 -54603358 + (GA)n Simple_repeat Simple_repeat 1 159 0 7 1355 371 185 191 64 chr4 101026762 101026803 -54603317 + B1_Mur2 SINE Alu 88 126 -21 7 1355 186 43 0 0 chr4 101028438 101028461 -54601659 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1355 26 64 0 0 chr4 101028714 101028761 -54601359 + GC_rich Low_complexity Low_complexity 1 47 0 7 1355 29 47 0 0 chr4 101029098 101029141 -54600979 + GC_rich Low_complexity Low_complexity 1 43 0 8 1355 22 0 0 0 chr4 101029171 101029193 -54600927 + GC_rich Low_complexity Low_complexity 1 22 0 8 1355 180 0 0 0 chr4 101029398 101029418 -54600702 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1355 198 0 0 0 chr4 101029848 101029870 -54600250 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 8 1355 229 281 62 0 chr4 101031101 101031165 -54598955 - ID4_ SINE ID -14 69 2 8 1355 1704 229 19 0 chr4 101031743 101032106 -54598014 - ORR1D2 LTR MaLR 0 370 1 8 1355 249 207 17 0 chr4 101032182 101032224 -54597896 + T-rich Low_complexity Low_complexity 19 61 0 8 1355 1006 48 0 197 chr4 101032224 101032407 -54597713 - B1_Mm SINE Alu 0 147 1 8 1355 249 207 17 0 chr4 101032407 101032422 -54597698 + T-rich Low_complexity Low_complexity 4 18 0 8 1355 352 235 12 12 chr4 101032532 101032614 -54597506 + PB1D10 SINE Alu 12 93 -24 8 1355 268 296 100 18 chr4 101033094 101033204 -54596916 - L2b LINE L2 -5 3370 3252 9 1355 481 274 0 105 chr4 101033350 101033493 -54596627 + ID_B1 SINE B4 90 217 -7 9 1355 410 75 0 0 chr4 101033652 101033705 -54596415 - ORR1D2-int LTR MaLR -45 1464 1412 8 1355 414 0 0 0 chr4 101033706 101033752 -54596368 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 9 1355 1184 76 0 6 chr4 101033753 101033912 -54596208 - B2_Mm2 SINE B2 -37 158 1 9 1355 1406 196 161 15 chr4 101034029 101034365 -54595755 + MTD LTR MaLR 20 404 -15 9 1355 519 250 24 0 chr4 101034538 101034662 -54595458 + B3 SINE B2 89 215 -1 9 1355 1145 75 0 0 chr4 101035084 101035230 -54594890 - B1_Mus1 SINE Alu 0 148 3 9 1355 22 0 0 0 chr4 101035523 101035545 -54594575 + AT_rich Low_complexity Low_complexity 1 22 0 9 1355 1107 0 0 0 chr4 101035835 101035958 -54594162 + (TCTCCC)n Simple_repeat Simple_repeat 5 127 0 9 1355 228 246 14 28 chr4 101035980 101036051 -54594069 - ID4 SINE ID -11 72 3 9 1355 260 248 54 95 chr4 101036138 101036285 -54593835 - MER112 DNA MER1_type -87 174 34 1 1355 395 291 149 19 chr4 101036310 101036471 -54593649 - B3A SINE B2 0 198 17 1 1355 1549 227 126 8 chr4 101037366 101037731 -54592389 + MTD LTR MaLR 12 419 0 1 1355 281 253 106 32 chr4 101037795 101037889 -54592231 + B4A SINE B4 186 286 -6 1 1355 251 256 139 13 chr4 101038253 101038332 -54591788 + B4A SINE B4 3 91 -201 1 1355 372 178 0 0 chr4 101038375 101038448 -54591672 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1355 266 321 0 135 chr4 101038450 101038576 -54591544 + B4A SINE B4 184 292 0 1 1355 21 57 0 0 chr4 101038619 101038654 -54591466 + AT_rich Low_complexity Low_complexity 1 35 0 1 1355 228 221 0 0 chr4 101038917 101038994 -54591126 + GA-rich Low_complexity Low_complexity 2 78 0 1 1355 210 331 92 24 chr4 101039313 101039477 -54590643 - L2 LINE L2 -1557 1862 1688 1 1355 269 268 0 12 chr4 101039770 101039853 -54590267 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1355 201 284 43 29 chr4 101039859 101039928 -54590192 - L2 LINE L2 -2120 1299 1230 1 1355 180 158 0 0 chr4 101040158 101040196 -54589924 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1355 601 146 8 8 chr4 101040270 101040394 -54589726 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 1 1355 183 129 0 0 chr4 101040427 101040458 -54589662 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1 1355 824 160 227 6 chr4 101040494 101040670 -54589450 + B3 SINE B2 2 216 0 1 1355 884 250 15 15 chr4 101040792 101040991 -54589129 + ID_B1 SINE B4 5 203 -21 1 1355 333 289 10 10 chr4 101040992 101041090 -54589030 + GA-rich Low_complexity Low_complexity 2 99 0 1 1355 3702 144 44 16 chr4 101041157 101041787 -54588333 - Lx LINE L1 -1 6653 6006 1 1355 309 239 0 90 chr4 101041986 101042064 -54588056 - BC1_Mm scRNA scRNA -68 84 14 1 1355 384 185 0 0 chr4 101042005 101042070 -54588050 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 1 1355 445 245 52 71 chr4 101042148 101042359 -54587761 - L1ME1 LINE L1 -99 6080 5874 1 1355 574 260 6 62 chr4 101042381 101042394 -54587726 - RSINE1 SINE B4 0 165 154 1 1355 429 20 0 0 chr4 101042394 101042444 -54587676 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1355 574 260 6 62 chr4 101042444 101042590 -54587530 - RSINE1 SINE B4 -12 153 15 1 1355 327 279 79 29 chr4 101042700 101042840 -54587280 - L1ME1 LINE L1 -720 5724 5578 1 1355 983 226 59 0 chr4 101043139 101043343 -54586777 - B3 SINE B2 0 216 1 1 1355 539 252 98 39 chr4 101043380 101043533 -54586587 - RSINE1 SINE B4 0 165 4 1 1355 716 208 120 73 chr4 101043627 101043819 -54586301 - B3 SINE B2 -15 201 1 1 1355 558 281 5 93 chr4 101044196 101044412 -54585708 - B3A SINE B2 -1 197 1 1 1355 403 254 88 26 chr4 101044435 101044548 -54585572 - PB1D9 SINE Alu 0 120 1 1 1355 256 274 91 61 chr4 101044562 101044694 -54585426 + MamRep605 Unknown Unknown 60 195 -681 1 1355 636 265 22 0 chr4 101044783 101044919 -54585201 + RSINE1 SINE B4 5 143 -22 1 1355 327 25 0 0 chr4 101044920 101044960 -54585160 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1355 21 0 0 31 chr4 101044964 101044981 -54585139 + AT_rich Low_complexity Low_complexity 1 17 0 1 1355 665 155 110 29 chr4 101044981 101045154 -54584966 + B2_Mm2 SINE B2 1 187 -8 1 1355 21 0 0 31 chr4 101045154 101045168 -54584952 + AT_rich Low_complexity Low_complexity 1 14 0 1 1355 693 205 8 0 chr4 101045175 101045297 -54584823 + B1_Mur1 SINE Alu 19 141 -8 1 1355 207 100 0 0 chr4 101045396 101045426 -54584694 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1355 695 297 86 8 chr4 101045442 101045710 -54584410 - B4A SINE B4 -3 289 1 1 1355 486 285 21 28 chr4 101046427 101046568 -54583552 + ID_B1 SINE B4 82 221 -3 1 1355 369 0 0 0 chr4 101046640 101046681 -54583439 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1355 321 68 0 0 chr4 101046681 101046724 -54583396 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1355 485 204 92 0 chr4 101046742 101046840 -54583280 - RSINE1 SINE B4 -42 123 17 1 1355 2222 238 30 10 chr4 101046840 101047346 -54582774 - RMER20A LTR ERVK 0 516 1 1 1355 277 216 0 0 chr4 101047452 101047503 -54582617 + RMER30 DNA MER1_type 1 51 -151 1 1355 318 50 0 0 chr4 101047577 101047617 -54582503 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1 1355 840 230 60 0 chr4 101047628 101047828 -54582292 - B3 SINE B2 -4 212 1 1 1355 23 33 0 0 chr4 101047929 101047959 -54582161 + AT_rich Low_complexity Low_complexity 1 30 0 1 1355 465 261 67 30 chr4 101047964 101048098 -54582022 - RSINE1 SINE B4 -13 152 14 1 1355 587 244 37 0 chr4 101048143 101048278 -54581842 - B1_Mur2 SINE Alu -9 140 1 1 1355 418 167 29 0 chr4 101048472 101048574 -54581546 + (CATATA)n Simple_repeat Simple_repeat 1 105 0 1 1355 331 231 15 0 chr4 101048582 101048647 -54581473 + HAL1-3A_ME LINE L1 1976 2041 -817 1 1355 4336 100 27 31 chr4 101048652 101049325 -54580795 + Lx LINE L1 5985 6654 0 1 1355 294 305 52 75 chr4 101049697 101049910 -54580210 + MamRep434 DNA TcMar 10 217 -209 1 1355 304 327 83 75 chr4 101049917 101050145 -54579975 + B4 SINE B4 1 237 -55 1 1355 874 182 7 13 chr4 101050145 101050295 -54579825 + B1_Mur1 SINE Alu 1 149 0 1 1355 304 327 83 75 chr4 101050295 101050344 -54579776 + B4 SINE B4 238 280 -12 1 1355 312 188 0 0 chr4 101050599 101050663 -54579457 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1355 1807 181 100 14 chr4 101051473 101051840 -54578280 + MTD LTR MaLR 16 405 -14 1 1355 186 71 0 0 chr4 101052317 101052345 -54577775 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1355 704 218 13 39 chr4 101052378 101052531 -54577589 - B1_Mur4 SINE Alu -1 149 1 1 1355 827 211 0 0 chr4 101052566 101052713 -54577407 - B1_Mus1 SINE Alu -1 147 1 1 1355 631 267 15 25 chr4 101052742 101052942 -54577178 - B3A SINE B2 0 198 1 1 1355 453 301 133 0 chr4 101053439 101053582 -54576538 - RSINE1 SINE B4 -1 164 3 1 1355 216 261 22 0 chr4 101053781 101053827 -54576293 + B1F SINE Alu 1 47 -102 1 1355 1883 111 3 13 chr4 101053951 101054252 -54575868 + Lx2A1 LINE L1 6711 7008 0 1 1355 583 195 163 0 chr4 101054270 101054393 -54575727 + B1_Mur2 SINE Alu 4 146 -3 1 1355 226 262 14 122 chr4 101054409 101054548 -54575572 + B4A SINE B4 94 217 -75 1 1355 681 198 0 31 chr4 101054794 101054910 -54575210 + B1_Mur2 SINE Alu 9 123 -26 1 1355 279 0 0 0 chr4 101054910 101054941 -54575179 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1355 681 198 0 31 chr4 101054941 101054954 -54575166 + B1_Mur2 SINE Alu 124 134 -15 1 1355 202 136 44 22 chr4 101054968 101055013 -54575107 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 1 1355 472 190 37 8 chr4 101055052 101055171 -54574949 - B1F SINE Alu -18 131 1 1 1355 279 290 23 68 chr4 101055171 101055185 -54574935 - ID_B1 SINE B4 -18 206 80 1 1355 489 205 93 54 chr4 101055340 101055469 -54574651 + RSINE1 SINE B4 2 135 -30 1 1355 204 125 0 0 chr4 101055495 101055527 -54574593 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 169 423 280 64 82 chr4 101056348 101056631 -54573489 + B4 SINE B4 33 292 0 1 1356 412 142 28 28 chr4 101056636 101056781 -54573339 + (CAGAGA)n Simple_repeat Simple_repeat 6 150 0 1 1356 443 292 156 9 chr4 101057469 101057687 -54572433 + LTR16C LTR ERVL 78 327 -162 1 1356 336 304 27 74 chr4 101057678 101057827 -54572293 - MER106A DNA MER1_type -93 143 2 1 1356 21 0 0 0 chr4 101057947 101057968 -54572152 + AT_rich Low_complexity Low_complexity 1 21 0 1 1356 790 244 77 5 chr4 101057976 101058170 -54571950 - B3 SINE B2 -8 208 1 1 1356 435 119 36 18 chr4 101058180 101058291 -54571829 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 1 1356 537 239 123 0 chr4 101058294 101058424 -54571696 - ID_B1 SINE B4 0 224 79 1 1356 1110 158 4 7 chr4 101058874 101059581 -54570539 + (TGGA)n Simple_repeat Simple_repeat 1 704 0 1 1356 1096 151 56 90 chr4 101059815 101059944 -54570176 - URR1B DNA MER1_type 0 225 99 1 1356 1388 76 49 0 chr4 101059944 101060129 -54569991 + B2_Mm2 SINE B2 2 195 0 1 1356 1096 151 56 90 chr4 101060129 101060232 -54569888 - URR1B DNA MER1_type -127 98 1 1 1356 887 154 0 51 chr4 101060319 101060476 -54569644 - B1_Mur4 SINE Alu 0 150 2 1 1356 403 279 29 145 chr4 101060324 101060496 -54569624 - B4 SINE B4 -71 221 70 1 1356 612 249 76 35 chr4 101060577 101060730 -54569390 + B3 SINE B2 1 157 -59 1 1356 522 0 0 0 chr4 101060730 101060788 -54569332 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1356 612 249 76 35 chr4 101060788 101060805 -54569315 + B3 SINE B2 158 178 -38 1 1356 528 329 71 36 chr4 101060838 101060921 -54569199 - B4 SINE B4 0 292 209 1 1356 207 0 0 0 chr4 101060921 101060944 -54569176 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1356 528 329 71 36 chr4 101060944 101061112 -54569008 - B4 SINE B4 -84 208 34 1 1356 6410 64 5 31 chr4 101061142 101061986 -54568134 - RLTR13B2 LTR ERVK 0 822 1 1 1356 297 281 61 0 chr4 101061996 101062078 -54568042 - PB1D9 SINE Alu 0 120 34 1 1356 533 197 6 149 chr4 101062219 101062380 -54567740 + B1_Mur1 SINE Alu 4 141 -8 1 1356 752 278 35 6 chr4 101062459 101062633 -54567487 + B3A SINE B2 4 182 -16 1 1356 219 220 0 0 chr4 101062633 101062683 -54567437 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1356 493 225 19 78 chr4 101062746 101062900 -54567220 + B1_Mur1 SINE Alu 5 149 0 1 1356 731 223 76 20 chr4 101063498 101063695 -54566425 + B3 SINE B2 1 208 -8 1 1356 466 234 50 83 chr4 101063742 101063863 -54566257 - RSINE1 SINE B4 -46 119 3 1 1356 322 230 82 30 chr4 101063889 101064040 -54566080 - MLT1A1 LTR MaLR -12 396 205 1 1356 546 16 0 0 chr4 101064351 101064414 -54565706 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1356 997 259 4 22 chr4 101064484 101064709 -54565411 + B4 SINE B4 3 223 -69 1 1356 395 19 19 0 chr4 101064776 101064828 -54565292 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1356 559 276 25 65 chr4 101064957 101065154 -54564966 - B3A SINE B2 0 216 25 2 1356 660 252 0 0 chr4 101065155 101065298 -54564822 + B1_Mur1 SINE Alu 2 144 -5 2 1356 975 57 44 0 chr4 101065474 101065633 -54564487 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 2 1356 527 132 35 0 chr4 101065648 101065762 -54564358 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 2 1356 210 213 0 32 chr4 101066420 101066483 -54563637 + B3A SINE B2 1 61 -137 2 1356 456 284 45 6 chr4 101066585 101066741 -54563379 - RSINE1 SINE B4 -2 163 2 2 1356 357 178 0 99 chr4 101066837 101066913 -54563207 - B4A SINE B4 0 292 220 2 1356 270 0 0 0 chr4 101066918 101066948 -54563172 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2 1356 1361 58 0 6 chr4 101066948 101067116 -54563004 - B2_Mm1a SINE B2 -25 168 2 2 1356 903 216 92 40 chr4 101067116 101067336 -54562784 - B4A SINE B4 -60 232 1 2 1356 427 318 30 30 chr4 101067337 101067535 -54562585 - MIRb SINE MIR -67 201 4 2 1356 276 267 87 22 chr4 101067717 101067809 -54562311 - B4A SINE B4 -22 270 173 2 1356 317 24 24 0 chr4 101067989 101068031 -54562089 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1356 192 324 18 45 chr4 101068032 101068142 -54561978 + L3 LINE CR1 3967 4073 -416 2 1356 182 312 100 38 chr4 101068258 101068338 -54561782 + L3 LINE CR1 4322 4406 -83 2 1356 279 0 0 0 chr4 101068898 101068929 -54561191 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1356 1131 69 0 14 chr4 101069297 101069444 -54560676 + B1_Mus2 SINE Alu 3 147 0 2 1356 579 276 22 0 chr4 101069570 101069704 -54560416 - ID_B1 SINE B4 0 224 88 2 1356 698 161 25 0 chr4 101069708 101069826 -54560294 - B1_Mur4 SINE Alu -29 121 1 2 1356 584 277 7 28 chr4 101069832 101069977 -54560143 - B1_Mur1 SINE Alu -1 148 7 2 1356 709 199 14 7 chr4 101070452 101070599 -54559521 + B1F2 SINE Alu 1 148 -1 2 1356 211 323 21 31 chr4 101070722 101070818 -54559302 - L3 LINE CR1 -418 4071 3977 2 1356 2624 226 135 49 chr4 101070930 101071288 -54558832 + L1_Mur3 LINE L1 900 1303 -6425 2 1356 1083 73 11 73 chr4 101071288 101071479 -54558641 + Lx2 LINE L1 6816 6994 -3 2 1356 2624 210 62 70 chr4 101071479 101072223 -54557897 + L1_Mur3 LINE L1 1304 2053 -3827 2 1356 814 177 13 26 chr4 101072267 101072418 -54557702 - B1_Mur2 SINE Alu 0 149 1 2 1356 660 236 28 0 chr4 101072466 101072610 -54557510 - RSINE1 SINE B4 -15 150 3 2 1356 498 210 0 10 chr4 101073011 101073112 -54557008 - B1F SINE Alu -23 126 27 2 1356 276 344 11 21 chr4 101073123 101073218 -54556902 - B1F SINE Alu -14 135 42 2 1356 3271 143 161 73 chr4 101073366 101074061 -54556059 - RMER6A LTR ERVK 0 756 1 2 1356 3674 128 16 24 chr4 101074061 101074309 -54555811 - RMER6-int LTR ERVK 0 3177 2932 2 1356 2136 194 60 68 chr4 101074309 101074811 -54555309 - RLTR19 LTR ERVK 0 499 2 2 1356 3674 128 16 24 chr4 101074811 101075180 -54554940 - RMER6-int LTR ERVK -246 2931 2565 2 1356 3507 149 28 21 chr4 101075203 101075819 -54554301 - RMER6-int LTR ERVK -2543 634 15 2 1356 2053 142 112 14 chr4 101076722 101077150 -54552970 + RMER6A LTR ERVK 282 751 -5 2 1356 228 326 100 11 chr4 101077519 101077609 -54552511 - B1F SINE Alu -3 146 49 2 1356 318 240 13 51 chr4 101077599 101077678 -54552442 - B1_Mur1 SINE Alu 0 149 74 2 1356 294 178 0 0 chr4 101077672 101077717 -54552403 + RLTR14 LTR ERV1 333 377 -5 2 1356 1225 87 58 21 chr4 101078073 101078261 -54551859 - B2_Mm2 SINE B2 0 195 1 2 1356 1233 181 20 0 chr4 101078544 101078748 -54551372 - B3 SINE B2 -8 208 1 2 1356 856 150 13 26 chr4 101078782 101078933 -54551187 - B1_Mur4 SINE Alu -1 149 1 2 1356 227 347 13 0 chr4 101078949 101079024 -54551096 - B1_Mur1 SINE Alu -8 141 66 2 1356 350 325 95 44 chr4 101079282 101079620 -54550500 - ORR1E LTR MaLR -3 356 2 2 1356 551 266 40 0 chr4 101079760 101079884 -54550236 + ID_B1 SINE B4 93 221 -3 2 1356 419 254 94 16 chr4 101079983 101080111 -54550009 - B1F1 SINE Alu -10 139 2 2 1356 4411 22 2 0 chr4 101080273 101080765 -54549355 - MT2_Mm LTR ERVL 0 493 1 2 1356 319 0 0 0 chr4 101080765 101080803 -54549317 - MERVL-int LTR ERVL 0 5485 5448 2 1356 403 167 46 35 chr4 101080803 101080890 -54549230 - ORR1A3-int LTR MaLR -1323 640 553 2 1356 48399 16 6 0 chr4 101080890 101086216 -54543904 - MERVL-int LTR ERVL -125 5360 1 2 1356 4411 22 2 0 chr4 101086216 101086708 -54543412 - MT2_Mm LTR ERVL 0 493 1 2 1356 659 189 49 0 chr4 101086715 101086879 -54543241 - RCHARR1 DNA MER1_type -77 897 726 2 1356 706 218 0 45 chr4 101086879 101087033 -54543087 + B1_Mur2 SINE Alu 2 148 -1 2 1356 488 290 15 15 chr4 101087076 101087209 -54542911 + ID_B1 SINE B4 92 224 0 2 1356 372 265 12 0 chr4 101087692 101087775 -54542345 - B4A SINE B4 -208 84 1 2 1356 276 30 0 0 chr4 101088083 101088116 -54542004 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1356 934 110 20 14 chr4 101088353 101088501 -54541619 + B1_Mur1 SINE Alu 1 149 0 2 1356 881 185 79 39 chr4 101088539 101088742 -54541378 - B3 SINE B2 -4 212 2 2 1356 357 82 0 0 chr4 101088767 101088816 -54541304 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1356 408 254 85 23 chr4 101088830 101088959 -54541161 - B1_Mur1 SINE Alu -12 137 1 2 1356 225 0 0 0 chr4 101089006 101089031 -54541089 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1356 606 284 128 0 chr4 101089207 101089411 -54540709 - B4A SINE B4 -61 231 2 2 1356 305 254 28 0 chr4 101089411 101089476 -54540644 + MER5A DNA MER1_type 123 189 0 2 1356 371 275 73 0 chr4 101090066 101090100 -54540020 + PB1D10 SINE Alu 1 42 -75 2 1356 7213 53 8 8 chr4 101090100 101091009 -54539111 + L1Md_F2 LINE L1 5670 6578 -4 2 1356 371 275 73 0 chr4 101091009 101091083 -54539037 + PB1D10 SINE Alu 43 116 -1 2 1356 234 62 0 0 chr4 101091394 101091426 -54538694 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1356 219 231 32 32 chr4 101092208 101092302 -54537818 + G-rich Low_complexity Low_complexity 2 95 0 2 1356 21 36 0 0 chr4 101092661 101092689 -54537431 + GC_rich Low_complexity Low_complexity 1 28 0 2 1356 574 202 17 34 chr4 101094557 101094675 -54535445 - B1_Mm SINE Alu -31 116 1 2 1356 797 216 104 16 chr4 101094773 101094966 -54535154 - B3 SINE B2 -3 213 4 2 1356 676 170 74 0 chr4 101095027 101095162 -54534958 - B1_Mus1 SINE Alu 0 148 4 2 1356 198 0 0 0 chr4 101095503 101095525 -54534595 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1356 1309 7 0 7 chr4 101095528 101095676 -54534444 - B1_Mus2 SINE Alu 0 147 1 2 1356 432 0 0 0 chr4 101096534 101096582 -54533538 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1356 678 181 78 38 chr4 101096638 101096829 -54533291 + B3 SINE B2 1 187 -8 2 1356 387 242 88 40 chr4 101096838 101096963 -54533157 + ID_B1 SINE B4 2 132 -92 2 1356 277 267 53 0 chr4 101097613 101097688 -54532432 + ID SINE ID 2 80 -144 2 1356 467 257 36 22 chr4 101097812 101097951 -54532169 - ID_B1 SINE B4 -67 157 17 2 1356 329 341 73 0 chr4 101098003 101098182 -54531938 - L1MC4a LINE L1 -142 7740 7549 2 1356 478 223 27 0 chr4 101098215 101098327 -54531793 - PB1D10 SINE Alu -2 115 1 2 1356 537 233 43 0 chr4 101098797 101098913 -54531207 - B1F SINE Alu 0 149 29 2 1356 324 0 0 0 chr4 101098994 101099030 -54531090 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1356 546 207 56 56 chr4 101099032 101099175 -54530945 - RSINE1 SINE B4 -19 146 4 2 1356 1963 151 89 25 chr4 101099210 101099603 -54530517 - MTC LTR MaLR -3 418 1 2 1356 440 283 106 40 chr4 101099940 101100091 -54530029 + B3A SINE B2 1 161 -34 2 1356 189 154 0 0 chr4 101100124 101100163 -54529957 + T-rich Low_complexity Low_complexity 1 39 0 2 1356 595 139 195 8 chr4 101100166 101100289 -54529831 - B1_Mus1 SINE Alu -1 147 2 2 1356 21 36 0 0 chr4 101100879 101100907 -54529213 + AT_rich Low_complexity Low_complexity 1 28 0 2 1356 197 273 74 49 chr4 101101039 101101120 -54529000 - MIRc SINE MIR -105 163 81 2 1356 287 207 48 24 chr4 101101390 101101474 -54528646 - MLT1A LTR MaLR 0 374 289 2 1356 393 246 75 60 chr4 101101484 101101618 -54528502 - B1F1 SINE Alu -12 137 2 2 1356 446 257 56 50 chr4 101101784 101101944 -54528176 - RSINE1 SINE B4 0 165 5 2 1356 395 189 63 45 chr4 101101953 101102064 -54528056 - PB1D10 SINE Alu 0 117 5 2 1356 371 242 99 0 chr4 101102350 101102441 -54527679 + PB1D10 SINE Alu 6 105 -44 2 1356 1243 72 60 16 chr4 101103150 101103334 -54526786 - B2_Mm2 SINE B2 -3 192 1 2 1356 404 271 74 91 chr4 101103716 101103947 -54526173 + B4 SINE B4 2 228 -64 2 1356 370 300 26 79 chr4 101104016 101104168 -54525952 + B1F2 SINE Alu 1 144 -5 2 1356 408 301 44 88 chr4 101104169 101104256 -54525864 + ID SINE ID 2 81 -143 2 1356 436 278 55 18 chr4 101104256 101104366 -54525754 + PB1D10 SINE Alu 1 114 -3 2 1356 320 312 170 25 chr4 101105180 101105463 -54524657 - L3 LINE CR1 -96 4393 4070 2 1356 546 137 0 0 chr4 101105465 101105560 -54524560 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 2 1356 200 200 50 0 chr4 101105564 101105624 -54524496 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1356 864 258 45 83 chr4 101106077 101106365 -54523755 - B4 SINE B4 0 292 16 2 1356 219 69 0 0 chr4 101106374 101106403 -54523717 + (TCCCC)n Simple_repeat Simple_repeat 4 32 0 2 1356 254 200 135 54 chr4 101106466 101106540 -54523580 - B1F1 SINE Alu -1 148 69 2 1356 227 309 95 11 chr4 101106762 101106857 -54523263 + B4A SINE B4 74 176 -116 2 1356 399 318 15 23 chr4 101106778 101106910 -54523210 + B1F SINE Alu 7 137 -12 2 1356 321 307 103 96 chr4 101107233 101107514 -54522606 - B4 SINE B4 0 292 10 2 1356 696 280 35 23 chr4 101107343 101107515 -54522605 - B3 SINE B2 -34 182 9 2 1356 774 248 61 37 chr4 101107525 101107739 -54522381 - B4 SINE B4 -72 220 2 2 1356 1116 131 22 11 chr4 101108022 101108207 -54521913 + B2_Mm2 SINE B2 2 188 -7 2 1356 288 212 188 3 chr4 101108207 101108297 -54521823 - B3 SINE B2 -79 114 3 3 1356 613 317 37 11 chr4 101108318 101108506 -54521614 - B3A SINE B2 -5 193 1 3 1356 32 0 0 0 chr4 101108515 101108547 -54521573 + AT_rich Low_complexity Low_complexity 1 32 0 3 1356 765 234 81 9 chr4 101108549 101108734 -54521386 - B3A SINE B2 -13 203 6 3 1356 280 294 15 0 chr4 101108732 101108800 -54521320 + B4A SINE B4 73 141 -151 3 1356 589 252 23 30 chr4 101108750 101108881 -54521239 + B1F SINE Alu 7 136 -13 3 1356 717 12 0 0 chr4 101108882 101108964 -54521156 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 3 1356 233 232 0 51 chr4 101109228 101109287 -54520833 + PB1D10 SINE Alu 30 85 -32 3 1356 223 183 387 0 chr4 101109298 101109391 -54520729 - RSINE1 SINE B4 -25 140 12 3 1356 405 0 0 0 chr4 101109654 101109699 -54520421 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1356 345 228 51 0 chr4 101110071 101110150 -54519970 - B1F SINE Alu 0 149 67 3 1356 444 242 30 10 chr4 101110342 101110442 -54519678 - PB1D10 SINE Alu -11 106 5 3 1356 667 243 135 0 chr4 101110582 101110767 -54519353 - B3 SINE B2 -6 210 1 3 1356 222 37 0 0 chr4 101111447 101111474 -54518646 + (TATG)n Simple_repeat Simple_repeat 4 30 0 3 1356 476 229 21 0 chr4 101111790 101111886 -54518234 - PB1D10 SINE Alu -17 100 3 3 1356 692 222 64 43 chr4 101111974 101111988 -54518132 - B3A SINE B2 -6 192 184 3 1356 186 43 0 0 chr4 101111988 101112011 -54518109 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 3 1356 692 222 64 43 chr4 101112011 101112184 -54517936 - B3A SINE B2 -15 183 1 3 1356 324 0 0 0 chr4 101113053 101113089 -54517031 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1356 376 240 47 19 chr4 101113099 101113205 -54516915 - B3A SINE B2 -89 109 1 3 1356 255 318 0 0 chr4 101113253 101113319 -54516801 - MIR SINE MIR -194 68 3 3 1356 446 236 28 19 chr4 101113525 101113633 -54516487 - PB1D7 SINE Alu -7 113 5 3 1356 519 17 0 0 chr4 101113644 101113704 -54516416 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1356 565 299 96 9 chr4 101113738 101113967 -54516153 - B4A SINE B4 -29 263 15 3 1356 511 280 40 61 chr4 101113981 101114209 -54515911 - ID_B1 SINE B4 0 224 2 3 1356 517 313 17 17 chr4 101114258 101114437 -54515683 - B4 SINE B4 -41 251 73 3 1356 207 0 0 0 chr4 101114617 101114640 -54515480 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1356 253 152 0 0 chr4 101114689 101114735 -54515385 - PB1D9 SINE Alu 0 120 75 3 1356 941 206 157 12 chr4 101114735 101115131 -54514989 - RMER19C LTR ERVK -1 610 158 3 1356 265 143 0 0 chr4 101115139 101115181 -54514939 - RMER19C LTR ERVK -569 42 1 3 1356 561 170 19 9 chr4 101115182 101115289 -54514831 - B1F2 SINE Alu -41 108 1 3 1356 332 306 80 8 chr4 101115289 101115301 -54514819 - B4 SINE B4 -89 167 70 3 1356 252 0 0 0 chr4 101115751 101115779 -54514341 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1356 528 93 0 0 chr4 101115779 101115854 -54514266 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1356 1093 246 48 34 chr4 101116123 101116264 -54513856 - ORR1D2 LTR MaLR -8 362 212 3 1356 340 0 80 0 chr4 101116264 101116314 -54513806 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 3 1356 1093 246 48 34 chr4 101116314 101116466 -54513654 - ORR1D2 LTR MaLR -159 211 65 3 1356 389 290 107 0 chr4 101116492 101116623 -54513497 - RSINE1 SINE B4 -17 148 4 3 1356 418 260 104 52 chr4 101116623 101116754 -54513366 - B1_Mus2 SINE Alu -7 140 3 3 1356 268 324 29 0 chr4 101117222 101117326 -54512794 + PB1D10 SINE Alu 1 105 -12 3 1356 263 106 0 41 chr4 101117351 101117400 -54512720 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 3 1356 198 0 0 0 chr4 101117401 101117423 -54512697 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 3 1356 6226 66 18 23 chr4 101118698 101119524 -54510596 + RLTR13B2 LTR ERVK 1 822 0 3 1356 358 229 181 0 chr4 101119606 101119711 -54510409 - ID_B1 SINE B4 -7 217 94 3 1356 329 290 34 0 chr4 101120251 101120371 -54509749 + B1F SINE Alu 8 133 -16 3 1356 553 243 126 6 chr4 101120648 101120830 -54509290 + B3 SINE B2 5 208 -8 3 1356 969 71 35 28 chr4 101121000 101121145 -54508975 - B1_Mus2 SINE Alu 0 147 2 3 1356 233 287 130 57 chr4 101121332 101121509 -54508611 - Lx8 LINE L1 -172 7301 7112 3 1356 1482 254 61 70 chr4 101121527 101121555 -54508565 - Lx8 LINE L1 -447 7026 7002 3 1356 1863 128 165 30 chr4 101121555 101121925 -54508195 - MTC LTR MaLR 0 421 2 3 1356 1482 254 61 70 chr4 101121925 101122354 -54507766 - Lx8 LINE L1 -472 7001 6573 3 1356 425 243 17 75 chr4 101123435 101123555 -54506565 - PB1D7 SINE Alu 0 120 8 3 1356 236 217 16 48 chr4 101123501 101123564 -54506556 - ID_B1 SINE B4 -84 140 80 3 1356 784 251 238 10 chr4 101123666 101123964 -54506156 - ORR1D2 LTR MaLR 0 370 5 3 1356 256 259 93 12 chr4 101124371 101124457 -54505663 - RCHARR1 DNA MER1_type -1 973 881 3 1356 316 267 33 11 chr4 101124501 101124592 -54505528 + RSINE1 SINE B4 44 136 -29 3 1356 566 133 137 32 chr4 101124693 101124817 -54505303 - B1_Mur2 SINE Alu -11 138 2 3 1356 295 212 30 0 chr4 101124938 101125004 -54505116 - ID_B1 SINE B4 -9 215 148 3 1356 251 223 38 105 chr4 101125004 101125043 -54505077 - B1F SINE Alu -9 140 43 3 1356 253 193 159 0 chr4 101125125 101125213 -54504907 - RCHARR1 DNA MER1_type -870 104 3 3 1356 379 261 133 8 chr4 101126244 101126364 -54503756 + B1_Mur1 SINE Alu 7 141 -8 3 1356 1097 250 73 21 chr4 101126496 101126823 -54503297 - ORR1E LTR MaLR -10 349 6 3 1356 703 163 16 0 chr4 101126969 101127092 -54503028 - B1_Mus2 SINE Alu -5 142 18 3 1356 399 292 13 34 chr4 101127092 101127114 -54503006 - ID_B1 SINE B4 -1 219 78 3 1356 361 270 139 18 chr4 101127127 101127293 -54502827 - B3A SINE B2 -9 186 1 3 1356 379 296 111 0 chr4 101127516 101127651 -54502469 - ID_B1 SINE B4 -10 214 65 3 1356 428 182 34 11 chr4 101127928 101128017 -54502103 - ID_B1 SINE B4 -6 218 128 3 1356 307 235 200 8 chr4 101128017 101128048 -54502072 - B1F SINE Alu -6 143 1 3 1356 311 290 81 0 chr4 101128529 101128653 -54501467 + B3 SINE B2 66 199 -17 3 1356 962 198 131 29 chr4 101128884 101129196 -54500924 + MTD LTR MaLR 29 372 -47 3 1356 1023 118 215 0 chr4 101129408 101129594 -54500526 - URR1A DNA MER1_type 0 226 1 3 1356 2663 66 3 0 chr4 101130483 101130848 -54499272 + MTB LTR MaLR 34 399 -1 3 1356 343 235 30 99 chr4 101130966 101131079 -54499041 - PB1D7 SINE Alu -34 115 10 3 1356 207 274 0 0 chr4 101131323 101131374 -54498746 + CT-rich Low_complexity Low_complexity 2 52 0 3 1356 450 220 161 0 chr4 101132401 101132519 -54497601 - B1_Mur1 SINE Alu -8 141 5 3 1356 367 307 10 0 chr4 101132571 101132672 -54497448 - PB1D10 SINE Alu -1 116 15 3 1356 225 0 0 0 chr4 101133494 101133519 -54496601 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 3 1356 242 294 14 14 chr4 101133908 101133977 -54496143 - PB1D10 SINE Alu -45 72 4 3 1356 405 221 94 19 chr4 101134947 101135053 -54495067 - B1_Mur1 SINE Alu -12 137 24 3 1356 246 164 164 0 chr4 101135240 101135301 -54494819 + B3 SINE B2 57 127 -89 3 1356 220 343 38 9 chr4 101138574 101138680 -54491440 - MIRb SINE MIR -135 133 25 3 1356 479 223 80 9 chr4 101140427 101140540 -54489580 - RSINE1 SINE B4 -44 121 1 3 1356 425 126 63 0 chr4 101140741 101140852 -54489268 + GA-rich Low_complexity Low_complexity 1 118 0 3 1356 1092 66 0 0 chr4 101141604 101141741 -54488379 - B1_Mus1 SINE Alu -9 139 3 3 1356 28 0 0 0 chr4 101142573 101142601 -54487519 + AT_rich Low_complexity Low_complexity 1 28 0 3 1356 360 0 0 0 chr4 101143452 101143492 -54486628 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1356 334 261 183 0 chr4 101143495 101143610 -54486510 - RSINE1 SINE B4 -22 143 8 3 1356 1884 104 48 0 chr4 101144633 101144922 -54485198 - ORR1A2 LTR MaLR -24 303 1 3 1356 2493 138 8 20 chr4 101146359 101146758 -54483362 - ORR1B1 LTR MaLR 0 394 1 3 1356 1381 239 71 17 chr4 101147338 101147692 -54482428 - MTE2a LTR MaLR -4 375 3 3 1356 1153 55 18 12 chr4 101147830 101147995 -54482125 + (GAAAA)n Simple_repeat Simple_repeat 1 166 0 3 1356 405 322 65 39 chr4 101148175 101148330 -54481790 - RSINE1 SINE B4 0 165 7 3 1356 258 32 0 0 chr4 101148330 101148361 -54481759 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1356 212 54 0 51 chr4 101148430 101148469 -54481651 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1356 960 110 0 0 chr4 101148470 101148606 -54481514 - B1_Mus1 SINE Alu -12 136 1 3 1356 454 223 87 10 chr4 101148703 101148807 -54481313 - PB1D9 SINE Alu -5 115 4 3 1356 869 229 18 22 chr4 101148985 101149208 -54480912 + ORR1C2 LTR MaLR 162 383 -1 3 1356 1837 168 92 6 chr4 101149257 101149605 -54480515 + ORR1C1 LTR MaLR 1 378 0 3 1356 1058 115 121 0 chr4 101150023 101150197 -54479923 - B2_Mm2 SINE B2 0 195 1 3 1356 512 170 100 0 chr4 101150203 101150303 -54479817 - B1_Mm SINE Alu -6 141 32 3 1356 396 281 29 7 chr4 101150426 101150562 -54479558 + B1F1 SINE Alu 3 141 -8 3 1356 229 300 12 24 chr4 101150576 101150658 -54479462 + ID4_ SINE ID 3 83 0 3 1356 244 198 152 98 chr4 101150672 101150784 -54479336 - PB1D9 SINE Alu -2 118 1 3 1356 252 0 0 0 chr4 101150968 101150996 -54479124 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1356 391 277 210 0 chr4 101151010 101151129 -54478991 - RSINE1 SINE B4 -18 147 4 3 1356 813 196 0 0 chr4 101151862 101152000 -54478120 - B1_Mus1 SINE Alu 0 148 11 3 1356 581 218 55 39 chr4 101152083 101152102 -54478018 - B3 SINE B2 0 216 197 4 1356 1208 61 0 0 chr4 101152102 101152249 -54477871 - B1_Mus1 SINE Alu 0 148 2 4 1356 672 219 53 36 chr4 101152249 101152422 -54477698 - B3A SINE B2 -20 196 22 4 1356 185 159 23 0 chr4 101152428 101152472 -54477648 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1356 960 199 10 10 chr4 101152495 101152698 -54477422 - B3 SINE B2 -5 211 9 4 1356 1086 62 18 36 chr4 101152693 101152859 -54477261 - B2_Mm2 SINE B2 -3 192 30 4 1356 1135 51 0 0 chr4 101152879 101153016 -54477104 - B1_Mus2 SINE Alu -10 137 1 4 1356 252 0 0 0 chr4 101153228 101153256 -54476864 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1356 239 0 0 31 chr4 101153840 101153872 -54476248 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1356 201 163 0 0 chr4 101153882 101153931 -54476189 + GA-rich Low_complexity Low_complexity 2 50 0 4 1356 789 11 0 0 chr4 101153949 101154039 -54476081 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1356 180 27 81 0 chr4 101154417 101154454 -54475666 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1356 221 128 43 0 chr4 101154785 101154832 -54475288 + T-rich Low_complexity Low_complexity 3 51 0 4 1356 299 102 61 0 chr4 101154832 101154881 -54475239 - L1_Mur1 LINE L1 -3687 2199 2148 4 1356 35984 87 17 11 chr4 101154871 101161223 -54468897 - L1Md_F2 LINE L1 0 6582 203 4 1356 21 71 0 0 chr4 101161643 101161685 -54468435 + AT_rich Low_complexity Low_complexity 1 42 0 4 1356 930 197 11 11 chr4 101161959 101162149 -54467971 - B3 SINE B2 0 216 27 4 1356 1885 219 36 19 chr4 101162189 101162585 -54467535 - Lx5 LINE L1 -49 7001 6625 4 1356 338 210 0 0 chr4 101162750 101162812 -54467308 - B1_Mur4 SINE Alu -87 63 2 4 1356 247 268 0 40 chr4 101162751 101162825 -54467295 - ID_B1 SINE B4 -82 142 72 4 1356 1646 169 69 41 chr4 101163623 101163987 -54466133 - ORR1D1 LTR MaLR 0 374 1 4 1356 447 52 0 0 chr4 101164283 101164341 -54465779 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1356 425 110 14 0 chr4 101164647 101164720 -54465400 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1356 241 254 0 0 chr4 101164728 101164787 -54465333 + (CATA)n Simple_repeat Simple_repeat 1 59 0 4 1356 184 59 0 56 chr4 101164994 101165030 -54465090 + (ATGTG)n Simple_repeat Simple_repeat 1 34 0 4 1356 415 278 76 38 chr4 101165043 101165139 -54464981 - RSINE1 SINE B4 0 165 62 4 1356 2576 152 140 15 chr4 101165139 101165659 -54464461 + RMER4B LTR ERVK 1 585 0 4 1356 415 278 76 38 chr4 101165659 101165719 -54464401 - RSINE1 SINE B4 -104 61 3 4 1356 1145 103 0 6 chr4 101165724 101165900 -54464220 + (TTTTC)n Simple_repeat Simple_repeat 5 179 0 4 1356 683 120 12 37 chr4 101165900 101166064 -54464056 + C-rich Low_complexity Low_complexity 3 162 0 4 1356 219 186 0 0 chr4 101166056 101166099 -54464021 + T-rich Low_complexity Low_complexity 5 47 0 4 1356 240 86 0 0 chr4 101166278 101166313 -54463807 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 4 1356 477 176 111 0 chr4 101167435 101167543 -54462577 + B1_Mur2 SINE Alu 23 142 -7 4 1356 391 329 63 78 chr4 101167564 101167834 -54462286 - B4 SINE B4 -2 290 25 4 1356 26 30 0 0 chr4 101167855 101167888 -54462232 + AT_rich Low_complexity Low_complexity 1 33 0 4 1356 466 267 1 8 chr4 101167894 101168023 -54462097 - PB1D10 SINE Alu -22 125 2 4 1356 310 248 18 18 chr4 101168032 101168143 -54461977 - L1MD LINE L1 -1280 4866 4756 4 1356 247 268 0 0 chr4 101168278 101168334 -54461786 - L1MC4 LINE L1 -180 7862 7807 4 1356 219 36 0 0 chr4 101168381 101168409 -54461711 + (CATTT)n Simple_repeat Simple_repeat 3 30 0 4 1356 240 35 0 0 chr4 101169832 101169861 -54460259 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1356 381 22 0 0 chr4 101170450 101170496 -54459624 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1356 22 0 0 0 chr4 101170655 101170677 -54459443 + AT_rich Low_complexity Low_complexity 1 22 0 4 1356 442 283 28 42 chr4 101171062 101171082 -54459038 + ID_B1 SINE B4 79 218 -4 4 1356 773 148 0 0 chr4 101171082 101171204 -54458916 + B1_Mur2 SINE Alu 22 143 -6 4 1356 258 32 0 0 chr4 101171207 101171238 -54458882 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 4 1356 544 165 106 38 chr4 101171457 101171589 -54458531 - B1_Mur3 SINE Alu -1 148 8 4 1356 279 267 82 76 chr4 101171461 101171619 -54458501 - B4A SINE B4 -68 224 66 4 1356 187 326 21 43 chr4 101171621 101171714 -54458406 - MIRc SINE MIR -102 166 76 4 1356 203 265 11 88 chr4 101171993 101172084 -54458036 + MIRb SINE MIR 90 173 -95 4 1356 315 18 33 66 chr4 101172298 101172359 -54457761 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4 1356 442 275 113 21 chr4 101172417 101172558 -54457562 + B3A SINE B2 36 189 -9 4 1356 370 224 71 10 chr4 101172892 101172991 -54457129 - PB1D10 SINE Alu 0 117 13 4 1356 232 335 48 24 chr4 101173045 101173210 -54456910 - L1M LINE L1 -746 5427 5259 4 1356 382 312 16 8 chr4 101173738 101173864 -54456256 + B4A SINE B4 1 127 -165 4 1356 441 0 0 0 chr4 101173889 101173938 -54456182 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1356 259 373 17 0 chr4 101174134 101174252 -54455868 + MER5A DNA MER1_type 60 179 -10 4 1356 605 14 0 13 chr4 101174554 101174629 -54455491 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 4 1356 534 31 0 0 chr4 101174641 101174705 -54455415 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1356 220 355 0 97 chr4 101174834 101174894 -54455226 - B4A SINE B4 -169 123 72 4 1356 1370 158 9 13 chr4 101174894 101175119 -54455001 - URR1A DNA MER1_type -2 224 1 4 1356 220 355 0 97 chr4 101175119 101175192 -54454928 - B4A SINE B4 -221 71 3 4 1356 187 317 115 29 chr4 101175206 101175310 -54454810 - MIR SINE MIR -110 152 40 4 1356 240 294 30 0 chr4 101176112 101176186 -54453934 + FLAM_A SINE Alu 2 78 -71 4 1356 875 59 8 0 chr4 101176215 101176334 -54453786 - B1_Mus1 SINE Alu 0 148 29 4 1356 348 226 23 35 chr4 101176371 101176458 -54453662 + PB1D10 SINE Alu 31 116 -1 4 1356 400 296 7 56 chr4 101176472 101176615 -54453505 + RSINE1 SINE B4 14 149 -16 4 1356 314 194 41 14 chr4 101177025 101177098 -54453022 - MIRb SINE MIR -78 190 116 4 1356 235 336 104 28 chr4 101177189 101177333 -54452787 - MIR SINE MIR -80 182 28 4 1356 205 50 75 0 chr4 101177545 101177585 -54452535 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 4 1356 465 287 23 8 chr4 101177740 101177870 -54452250 - RSINE1 SINE B4 -29 136 5 4 1356 1479 68 0 16 chr4 101178865 101179059 -54451061 + B2_Mm2 SINE B2 1 191 -4 4 1356 1135 218 0 40 chr4 101179072 101179297 -54450823 - B3 SINE B2 0 216 1 4 1356 21 57 0 0 chr4 101179301 101179336 -54450784 + AT_rich Low_complexity Low_complexity 1 35 0 4 1356 216 0 0 0 chr4 101179411 101179435 -54450685 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1356 417 214 48 48 chr4 101179435 101179538 -54450582 - RSINE1 SINE B4 -62 103 1 4 1356 241 287 135 32 chr4 101179831 101179957 -54450163 + L2a LINE L2 3286 3424 -2 4 1356 180 269 139 13 chr4 101180252 101180331 -54449789 + L2a LINE L2 3337 3425 -1 4 1356 22 35 0 0 chr4 101180987 101181016 -54449104 + AT_rich Low_complexity Low_complexity 1 29 0 4 1356 186 43 0 0 chr4 101181343 101181366 -54448754 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1356 686 299 11 5 chr4 101183839 101184024 -54446096 + B3A SINE B2 1 186 -12 4 1356 189 0 0 0 chr4 101184225 101184246 -54445874 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4 1356 416 154 0 13 chr4 101184265 101184344 -54445776 + BC1_Mm scRNA scRNA 1 78 -74 4 1356 195 69 0 0 chr4 101184727 101184756 -54445364 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1356 819 231 0 0 chr4 101185077 101185220 -54444900 + B1_Mus2 SINE Alu 1 143 -4 4 1356 30 27 0 0 chr4 101185443 101185480 -54444640 + AT_rich Low_complexity Low_complexity 1 37 0 4 1356 1005 259 13 86 chr4 101185595 101185908 -54444212 - B4A SINE B4 -2 290 1 4 1356 998 148 26 42 chr4 101186003 101186193 -54443927 - B2_Mm2 SINE B2 -7 188 2 4 1356 403 303 52 29 chr4 101186376 101186512 -54443608 - B1F1 SINE Alu -9 140 2 4 1356 453 294 69 4 chr4 101186597 101186843 -54443277 - L1M5 LINE L1 -1774 4372 4111 4 1356 468 194 32 0 chr4 101186846 101186939 -54443181 + RSINE1 SINE B4 2 97 -68 4 1356 472 270 76 36 chr4 101186946 101187169 -54442951 - L1M5 LINE L1 -3127 3019 2788 4 1356 624 200 53 159 chr4 101187327 101187535 -54442585 - B3A SINE B2 0 198 9 4 169 636 221 14 0 chr4 101187541 101187681 -54442439 - B1F SINE Alu -6 143 2 4 1357 394 284 0 50 chr4 101187692 101187812 -54442308 - B1F SINE Alu -21 128 15 4 1357 240 237 118 0 chr4 101187899 101187975 -54442145 + PB1 SINE Alu 42 126 -1 4 1357 237 181 56 0 chr4 101188041 101188113 -54442007 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1357 252 77 0 0 chr4 101188126 101188165 -54441955 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1357 1052 61 0 0 chr4 101188168 101188315 -54441805 - B1_Mus1 SINE Alu 0 148 2 4 1357 298 244 22 11 chr4 101188813 101188904 -54441216 + L1ME3A LINE L1 6078 6169 -4 4 1357 266 164 16 32 chr4 101188945 101189008 -54441112 - B1_Mur1 SINE Alu -10 139 78 4 1357 549 0 0 0 chr4 101189422 101189483 -54440637 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1357 488 215 29 58 chr4 101189714 101189852 -54440268 + B1_Mur3 SINE Alu 12 145 -4 4 1357 22 80 0 0 chr4 101189907 101189957 -54440163 + AT_rich Low_complexity Low_complexity 1 50 0 4 1357 261 267 38 9 chr4 101190061 101190167 -54439953 - ORR1E LTR MaLR -2 357 249 4 1357 417 39 0 0 chr4 101190260 101190311 -54439809 + (AGGGGG)n Simple_repeat Simple_repeat 6 56 0 5 1357 258 32 0 0 chr4 101190489 101190520 -54439600 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1357 396 40 0 0 chr4 101190893 101190943 -54439177 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1357 441 0 0 0 chr4 101190943 101190991 -54439129 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1357 268 273 0 0 chr4 101190998 101191064 -54439056 - B1F1 SINE Alu -51 98 33 5 1357 221 245 0 19 chr4 101191684 101191738 -54438382 + CT-rich Low_complexity Low_complexity 4 56 0 5 1357 359 281 31 15 chr4 101192192 101192322 -54437798 - L1MB7 LINE L1 -223 5961 5830 5 1357 350 276 48 0 chr4 101192360 101192465 -54437655 - PB1D10 SINE Alu -5 112 3 5 1357 1382 88 5 10 chr4 101193370 101193564 -54436556 + B2_Mm2 SINE B2 1 193 -2 5 1357 633 300 30 46 chr4 101193601 101193863 -54436257 - B4A SINE B4 0 292 35 5 1357 632 305 49 19 chr4 101194141 101194492 -54435628 - L1MD2 LINE L1 -1813 5972 5606 5 1357 1366 73 10 35 chr4 101194492 101194691 -54435429 - B2_Mm2 SINE B2 -1 194 1 5 1357 573 317 61 52 chr4 101194691 101194849 -54435271 - L1MD2 LINE L1 -579 5605 5443 5 1357 1076 263 99 0 chr4 101195627 101195969 -54434151 + MTEa LTR MaLR 4 379 0 5 1357 1328 91 43 0 chr4 101196063 101196250 -54433870 + B2_Mm2 SINE B2 1 195 0 5 1357 3144 180 69 46 chr4 101196263 101196710 -54433410 - RLTR40 LTR ERVK -65 752 296 5 1357 378 0 0 0 chr4 101196710 101196752 -54433368 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1357 3144 180 69 46 chr4 101196752 101197039 -54433081 - RLTR40 LTR ERVK -522 295 1 5 1357 432 305 68 74 chr4 101197136 101197462 -54432658 + ORR1E LTR MaLR 22 345 -14 5 1357 231 289 46 46 chr4 101197526 101197613 -54432507 - B1F1 SINE Alu -54 93 7 5 1357 297 278 14 0 chr4 101198172 101198244 -54431876 - ID2 SINE ID -3 80 8 5 1357 28 29 0 0 chr4 101198536 101198571 -54431549 + AT_rich Low_complexity Low_complexity 1 35 0 5 1357 2842 124 46 9 chr4 101198572 101199029 -54431091 - Lx4A LINE L1 -10 7048 6575 5 1357 236 176 39 19 chr4 101199108 101199160 -54430960 - URR1B DNA MER1_type 0 225 173 5 1357 290 312 10 31 chr4 101199259 101199355 -54430765 + RSINE1 SINE B4 68 161 -4 5 1357 2730 323 98 35 chr4 101199428 101200332 -54429788 - MTEa-int LTR MaLR -3 1577 619 5 1357 369 0 0 0 chr4 101200332 101200373 -54429747 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1357 2730 323 98 35 chr4 101200373 101200767 -54429353 - MTEa-int LTR MaLR -962 618 199 5 1357 1047 239 125 52 chr4 101200767 101201112 -54429008 - ORR1D2 LTR MaLR 0 370 1 5 1357 2730 323 98 35 chr4 101201112 101201290 -54428830 - MTEa-int LTR MaLR -1382 198 7 5 1357 272 214 39 39 chr4 101201296 101201398 -54428722 - MTEa LTR MaLR 0 379 278 5 1357 517 204 12 0 chr4 101201516 101201688 -54428432 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 5 1357 602 258 21 58 chr4 101201717 101201906 -54428214 - MTEa LTR MaLR -197 182 1 5 1357 412 277 102 14 chr4 101201914 101202130 -54427990 - L1M5 LINE L1 -573 5600 5366 5 1357 860 160 7 0 chr4 101202164 101202308 -54427812 - B1_Mus1 SINE Alu -2 146 2 5 1357 318 226 55 110 chr4 101202308 101202324 -54427796 - B4A SINE B4 -63 225 75 5 1357 439 314 18 48 chr4 101202380 101202547 -54427573 - RSINE1 SINE B4 -3 162 1 5 1357 27 49 0 0 chr4 101202555 101202596 -54427524 + AT_rich Low_complexity Low_complexity 1 41 0 5 1357 227 266 77 11 chr4 101202684 101202771 -54427349 - PB1D10 SINE Alu -6 114 15 5 1357 229 324 29 0 chr4 101202932 101203037 -54427083 - L1M5 LINE L1 -1017 5129 5022 5 1357 242 324 0 26 chr4 101203140 101203216 -54426904 - ID4 SINE ID -2 81 8 5 1357 2408 239 120 19 chr4 101203320 101203954 -54426166 - L1MA8 LINE L1 -74 6217 5537 5 1357 378 0 0 0 chr4 101203954 101203996 -54426124 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1357 2408 239 120 19 chr4 101203996 101204204 -54425916 - L1MA8 LINE L1 -755 5536 5291 5 1357 1132 259 103 12 chr4 101204201 101204627 -54425493 - L1MA8 LINE L1 -1253 4890 4426 5 1357 1044 263 105 21 chr4 101204627 101205000 -54425120 + MLT2B3 LTR ERVL 18 421 -133 5 1357 193 263 0 0 chr4 101205274 101205312 -54424808 - MIRb SINE MIR -175 93 56 5 1357 598 222 29 7 chr4 101205471 101205607 -54424513 - B1_Mur4 SINE Alu 0 150 12 5 1357 863 101 126 6 chr4 101205667 101205826 -54424294 - L1_Mus3 LINE L1 -2 6636 6459 5 1357 289 282 62 37 chr4 101205891 101206053 -54424067 - MLT1A LTR MaLR -2 547 382 5 1357 640 294 99 9 chr4 101206065 101206426 -54423694 - MLT1A LTR MaLR 0 374 107 5 1357 680 291 126 10 chr4 101206590 101206892 -54423228 - Lx8 LINE L1 -195 7278 6942 5 1357 268 222 98 36 chr4 101206896 101207008 -54423112 - MLT1A LTR MaLR -251 139 21 5 1357 577 288 119 32 chr4 101207151 101207402 -54422718 - MER21B LTR ERV1 -145 718 446 5 1357 189 175 0 0 chr4 101207862 101207902 -54422218 + A-rich Low_complexity Low_complexity 1 40 0 5 1357 369 0 0 0 chr4 101208068 101208109 -54422011 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1357 307 270 8 80 chr4 101208721 101208846 -54421274 + MER33 DNA MER1_type 170 285 -39 5 1357 329 0 0 24 chr4 101208848 101208890 -54421230 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1357 1778 189 81 18 chr4 101208898 101209280 -54420840 - MTD LTR MaLR -13 406 1 5 1357 239 148 62 47 chr4 101210090 101210154 -54419966 + MLT1A1 LTR MaLR 71 135 -273 5 1357 382 299 20 34 chr4 101210192 101210341 -54419779 + B1F1 SINE Alu 2 148 -1 5 1357 644 239 6 63 chr4 101211869 101212043 -54418077 + RSINE1 SINE B4 2 165 0 5 1357 1146 148 24 19 chr4 101212170 101212377 -54417743 - URR1B DNA MER1_type 0 225 18 5 1357 371 52 34 17 chr4 101212395 101212454 -54417666 - MTC LTR MaLR 0 421 362 5 1357 1126 148 9 41 chr4 101212454 101212672 -54417448 - ORR1C2 LTR MaLR 0 384 174 5 1357 642 131 0 35 chr4 101212672 101212815 -54417305 + GA-rich Low_complexity Low_complexity 1 138 0 5 1357 706 187 32 26 chr4 101212834 101212988 -54417132 - ORR1C2 LTR MaLR -193 181 27 5 1357 1191 200 8 25 chr4 101213049 101213285 -54416835 - MTD LTR MaLR -187 232 1 5 1357 392 243 53 18 chr4 101214770 101214883 -54415237 - RSINE1 SINE B4 -40 125 9 5 1357 290 349 27 18 chr4 101215249 101215360 -54414760 - PB1D10 SINE Alu -1 116 5 5 1357 1051 192 77 19 chr4 101216950 101217149 -54412971 + RMER6B LTR ERVK 1 213 -248 5 1357 1181 82 0 0 chr4 101217149 101217295 -54412825 + B1_Mus1 SINE Alu 2 147 -1 5 1357 1051 192 77 19 chr4 101217295 101217355 -54412765 + RMER6B LTR ERVK 214 275 -186 5 1357 501 152 13 50 chr4 101217355 101217514 -54412606 + GA-rich Low_complexity Low_complexity 2 154 0 5 1357 1322 62 0 6 chr4 101217514 101217692 -54412428 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 5 1357 1378 149 8 8 chr4 101217705 101217948 -54412172 + RMER6B LTR ERVK 215 457 -4 5 1357 288 0 0 0 chr4 101218194 101218226 -54411894 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1357 498 340 100 19 chr4 101218404 101218665 -54411455 + B4A SINE B4 8 289 -3 5 1357 468 0 0 0 chr4 101219121 101219173 -54410947 + (TAG)n Simple_repeat Simple_repeat 3 54 0 5 1357 313 301 190 0 chr4 101219226 101219389 -54410731 + B3A SINE B2 2 195 -3 5 1357 21 0 0 0 chr4 101219897 101219918 -54410202 + AT_rich Low_complexity Low_complexity 1 21 0 5 1357 670 213 63 0 chr4 101219924 101220051 -54410069 - B1_Mur1 SINE Alu -13 136 2 5 1357 570 298 40 0 chr4 101220072 101220223 -54409897 - B3A SINE B2 -41 157 1 5 1357 279 0 0 0 chr4 101220315 101220346 -54409774 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1357 369 276 24 127 chr4 101220439 101220605 -54409515 - B4A SINE B4 -74 150 6 5 1357 283 307 97 7 chr4 101222203 101222357 -54407763 - Arthur1A DNA Tip100 -9 168 1 5 1357 190 143 41 0 chr4 101223674 101223723 -54406397 + G-rich Low_complexity Low_complexity 1 51 0 5 1357 21 82 0 0 chr4 101225989 101226038 -54404082 + AT_rich Low_complexity Low_complexity 1 49 0 5 1357 644 294 31 0 chr4 101226057 101226217 -54403903 - RSINE1 SINE B4 0 165 1 5 1357 449 211 119 45 chr4 101226212 101226346 -54403774 - B1F1 SINE Alu 0 149 6 5 1357 350 276 65 36 chr4 101226226 101226365 -54403755 - ID_B1 SINE B4 -12 212 70 5 1357 408 276 136 60 chr4 101226793 101227125 -54402995 + ORR1E LTR MaLR 3 359 0 5 1357 1366 72 16 16 chr4 101227234 101227419 -54402701 - B2_Mm2 SINE B2 -9 186 2 5 1357 706 254 88 31 chr4 101227699 101227926 -54402194 + 7SK RNA RNA 1 240 -91 5 1357 263 250 45 91 chr4 101228494 101228582 -54401538 + B4 SINE B4 71 154 -138 5 1357 669 316 31 4 chr4 101228939 101229168 -54400952 + L1MA4 LINE L1 5481 5715 -576 5 1357 4444 36 2 2 chr4 101229168 101229693 -54400427 - L1Md_T LINE L1 0 6582 6058 5 1357 434 204 67 19 chr4 101229745 101229850 -54400270 - B4 SINE B4 -5 287 178 5 1357 511 229 40 53 chr4 101230025 101230177 -54399943 - B4 SINE B4 -141 151 2 5 1357 327 238 78 119 chr4 101230181 101230254 -54399866 + L1MA4 LINE L1 5709 5792 -508 5 1357 330 26 0 0 chr4 101230254 101230293 -54399827 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1357 327 238 78 119 chr4 101230293 101230438 -54399682 + L1MA4 LINE L1 5793 5918 -382 5 1357 353 136 15 0 chr4 101231930 101231996 -54398124 + CT-rich Low_complexity Low_complexity 1 67 0 5 1357 365 284 34 34 chr4 101233491 101233666 -54396454 + CT-rich Low_complexity Low_complexity 1 175 0 5 1357 249 33 0 0 chr4 101233728 101233758 -54396362 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1357 389 200 71 0 chr4 101234784 101234869 -54395251 - PB1D10 SINE Alu -13 104 14 5 1357 228 67 0 0 chr4 101235212 101235242 -54394878 + (CAT)n Simple_repeat Simple_repeat 1 30 0 5 1357 268 234 25 25 chr4 101236140 101236219 -54393901 - L1MA5 LINE L1 -5 6295 6217 5 1357 366 271 76 19 chr4 101237424 101237582 -54392538 + MER20 DNA MER1_type 28 194 -25 5 1357 263 275 12 0 chr4 101237859 101237939 -54392181 - BC1_Mm scRNA scRNA -66 86 6 5 1357 3634 177 29 19 chr4 101238654 101239374 -54390746 - Lx2B LINE L1 0 7000 6274 5 1357 522 31 0 0 chr4 101239955 101240019 -54390101 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1357 314 281 121 64 chr4 101240530 101240811 -54389309 - L1MD2 LINE L1 -17 6342 6046 5 1357 203 152 22 0 chr4 101241405 101241451 -54388669 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1357 382 203 0 42 chr4 101241476 101241548 -54388572 - ID4_ SINE ID -14 69 1 5 1357 278 271 47 12 chr4 101242781 101242867 -54387253 - MLT1J LTR MaLR -338 174 86 5 1357 240 329 64 23 chr4 101243071 101243242 -54386878 - MIR SINE MIR 0 262 85 5 1357 378 0 0 0 chr4 101243613 101243655 -54386465 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1357 656 254 14 21 chr4 101243662 101243807 -54386313 - RSINE1 SINE B4 -18 147 4 6 1357 1168 148 9 50 chr4 101246146 101246366 -54383754 - URR1A DNA MER1_type -4 222 12 6 1357 895 113 252 0 chr4 101246497 101246648 -54383472 + B2_Mm2 SINE B2 3 191 -4 6 1357 228 337 0 21 chr4 101247209 101247303 -54382817 + CT-rich Low_complexity Low_complexity 6 97 0 6 1357 2268 302 74 21 chr4 101247310 101248239 -54381881 - Lx8 LINE L1 -208 7265 6288 6 1357 714 255 103 91 chr4 101248315 101248634 -54381486 + MTE2a LTR MaLR 57 379 0 6 1357 307 277 59 15 chr4 101248917 101249117 -54381003 - L1MC5 LINE L1 -1117 6878 6633 6 1357 537 281 158 60 chr4 101250109 101250177 -54379943 - B4 SINE B4 -1 291 228 6 1357 1226 41 0 13 chr4 101250177 101250326 -54379794 - B1_Mus2 SINE Alu 0 147 1 6 1357 537 281 158 60 chr4 101250326 101250522 -54379598 - B4 SINE B4 -65 227 1 6 1357 220 267 54 22 chr4 101250554 101250646 -54379474 - MIRb SINE MIR -61 207 113 6 1357 435 231 48 0 chr4 101250687 101250791 -54379329 + Lx7 LINE L1 7259 7367 -329 6 1357 381 131 0 0 chr4 101250803 101250864 -54379256 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1357 1394 162 43 79 chr4 101250885 101251213 -54378907 + Lx7 LINE L1 7371 7686 -10 6 1357 219 167 0 0 chr4 101251226 101251268 -54378852 + GA-rich Low_complexity Low_complexity 2 43 0 6 1357 1125 205 51 134 chr4 101252066 101252500 -54377620 - RMER10B LTR ERVL 0 398 1 6 1357 424 274 77 35 chr4 101252661 101252831 -54377289 + MIRb SINE MIR 31 207 -61 6 1357 301 210 40 40 chr4 101253019 101253143 -54376977 + (CA)n Simple_repeat Simple_repeat 2 125 0 6 1357 217 150 25 0 chr4 101253217 101253257 -54376863 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1357 358 263 168 8 chr4 101253259 101253378 -54376742 - B1F SINE Alu -8 141 4 6 1357 468 152 31 52 chr4 101254909 101255006 -54375114 + B3 SINE B2 2 96 -120 6 1357 516 306 15 0 chr4 101255108 101255242 -54374878 + B3 SINE B2 67 202 -14 6 1357 421 111 37 0 chr4 101255242 101255323 -54374797 + (TATG)n Simple_repeat Simple_repeat 2 85 0 6 1357 26 30 0 0 chr4 101255323 101255356 -54374764 + AT_rich Low_complexity Low_complexity 1 33 0 6 1357 504 240 208 0 chr4 101255357 101255540 -54374580 + MLT1A0 LTR MaLR 145 365 0 6 1357 843 285 13 13 chr4 101255719 101255945 -54374175 + B4A SINE B4 1 226 -66 6 1357 651 268 14 0 chr4 101255945 101256087 -54374033 + RSINE1 SINE B4 1 144 -21 6 1357 284 277 15 0 chr4 101256141 101256206 -54373914 + B4A SINE B4 223 288 -4 6 1357 705 149 0 39 chr4 101256247 101256401 -54373719 + GA-rich Low_complexity Low_complexity 3 150 0 6 1357 234 0 0 0 chr4 101257117 101257143 -54372977 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1357 221 200 36 0 chr4 101258203 101258258 -54371862 + CT-rich Low_complexity Low_complexity 5 61 0 6 1357 617 243 0 14 chr4 101258794 101258940 -54371180 - RSINE1 SINE B4 -2 163 20 6 1357 991 164 23 0 chr4 101259244 101259421 -54370699 - URR1B DNA MER1_type 0 225 45 6 1357 301 205 32 6 chr4 101259692 101259766 -54370354 - PB1D10 SINE Alu -1 119 46 6 1357 350 186 0 0 chr4 101259782 101259852 -54370268 + URR1B DNA MER1_type 156 225 0 6 1357 692 152 0 0 chr4 101260300 101260412 -54369708 - B1_Mus2 SINE Alu -33 114 3 6 1357 226 234 94 0 chr4 101260541 101260605 -54369515 - L2b LINE L2 -14 3361 3292 6 1357 986 238 182 6 chr4 101260878 101261208 -54368912 - MTD LTR MaLR -14 405 18 6 1357 22 0 0 0 chr4 101261324 101261346 -54368774 + AT_rich Low_complexity Low_complexity 1 22 0 6 1357 414 39 0 0 chr4 101262722 101262774 -54367346 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1357 372 312 23 0 chr4 101263638 101263766 -54366354 + ID_B1 SINE B4 86 216 -8 6 1357 242 225 0 12 chr4 101263909 101263990 -54366130 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 1357 779 231 19 6 chr4 101264067 101264228 -54365892 + B3 SINE B2 1 163 -53 6 1357 791 219 35 65 chr4 101264234 101264462 -54365658 + ORR1D1 LTR MaLR 3 223 -151 6 1357 349 229 86 131 chr4 101264462 101264683 -54365437 - RLTR31A_Mm LTR ERVK 0 561 307 6 1357 3416 151 51 19 chr4 101264685 101265333 -54364787 - RLTR17 LTR ERVK -23 669 1 6 1357 757 192 26 19 chr4 101265335 101265489 -54364631 + ORR1D1 LTR MaLR 220 374 0 6 1357 3091 26 0 0 chr4 101265813 101266159 -54363961 - ORR1A0 LTR MaLR 0 346 1 6 1357 316 372 41 0 chr4 101266755 101266900 -54363220 - MER58B DNA MER1_type -1 340 190 6 1357 214 255 0 0 chr4 101266909 101266956 -54363164 - ID4 SINE ID -36 47 1 6 1357 230 398 12 18 chr4 101266959 101267123 -54362997 - MER58B DNA MER1_type -149 192 30 6 1357 189 0 0 0 chr4 101267154 101267175 -54362945 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1357 4137 79 36 4 chr4 101268089 101268637 -54361483 - RMER2 LTR ERV1 0 567 2 6 1357 498 259 0 0 chr4 101269392 101269500 -54360620 + PB1D7 SINE Alu 2 109 -11 6 1357 281 268 73 0 chr4 101269958 101270040 -54360080 + MER20 DNA MER1_type 117 204 -15 6 1357 696 264 38 5 chr4 101272279 101272488 -54357632 + B3 SINE B2 1 216 0 6 1357 402 320 49 0 chr4 101272583 101272705 -54357415 - B1F2 SINE Alu -5 144 17 6 1357 261 0 0 0 chr4 101272815 101272844 -54357276 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1357 232 216 0 0 chr4 101272876 101272927 -54357193 - MIR SINE MIR -88 120 70 6 1357 693 145 107 0 chr4 101272951 101273082 -54357038 - RMER1C Other Other -8 1334 1190 6 1357 351 0 0 0 chr4 101273343 101273382 -54356738 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1357 447 310 11 75 chr4 101274415 101274602 -54355518 - B3A SINE B2 -6 210 36 6 1357 22 0 0 0 chr4 101275646 101275668 -54354452 + AT_rich Low_complexity Low_complexity 1 22 0 6 1357 737 200 7 28 chr4 101275761 101275905 -54354215 + B1_Mur3 SINE Alu 1 141 -8 6 1357 302 201 58 7 chr4 101275960 101276115 -54354005 + CT-rich Low_complexity Low_complexity 4 166 0 6 1357 310 308 26 0 chr4 101276118 101276196 -54353924 - ID SINE ID -142 82 3 6 1357 496 228 101 138 chr4 101277061 101277249 -54352871 + B3A SINE B2 1 181 -14 6 1357 216 0 0 0 chr4 101277316 101277340 -54352780 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 6 1357 1040 69 150 0 chr4 101277584 101277744 -54352376 + B2_Mm2 SINE B2 5 188 -7 6 1357 376 253 129 0 chr4 101278832 101278925 -54351195 + PB1D10 SINE Alu 20 124 -25 6 1357 419 276 8 16 chr4 101279563 101279684 -54350436 - PB1D7 SINE Alu 0 127 1 6 1357 744 163 93 0 chr4 101280725 101280854 -54349266 + B1_Mur4 SINE Alu 1 141 -9 6 1357 336 48 0 0 chr4 101280854 101280896 -54349224 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 6 1357 793 274 33 9 chr4 101281077 101281287 -54348833 + B3 SINE B2 1 215 -1 6 1357 702 91 0 0 chr4 101281679 101281778 -54348342 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 6 1357 1031 51 0 0 chr4 101281778 101281916 -54348204 - B1_Mus2 SINE Alu -2 145 8 6 1357 21 0 0 0 chr4 101283041 101283062 -54347058 + AT_rich Low_complexity Low_complexity 1 21 0 6 1357 583 204 107 18 chr4 101283078 101283258 -54346862 + B3A SINE B2 2 188 -28 6 1357 929 163 107 28 chr4 101283359 101283574 -54346546 - MTC LTR MaLR -10 411 180 6 1357 180 0 0 0 chr4 101283678 101283698 -54346422 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1357 225 65 0 0 chr4 101284188 101284219 -54345901 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1357 785 129 8 15 chr4 101284220 101284354 -54345766 - B1_Mur4 SINE Alu -6 144 12 6 1357 785 172 0 0 chr4 101284537 101284665 -54345455 + B1_Mur3 SINE Alu 1 128 -21 6 1357 829 243 23 19 chr4 101285091 101285305 -54344815 - B3 SINE B2 -1 215 1 6 1357 1499 187 57 43 chr4 101285912 101286281 -54343839 - ORR1D1 LTR MaLR 0 374 1 6 1357 314 250 0 0 chr4 101287247 101287311 -54342809 + RSINE1 SINE B4 11 74 -91 6 1357 1168 288 37 13 chr4 101287320 101287700 -54342420 - L1MB7 LINE L1 -92 6092 5704 6 1357 21 0 0 0 chr4 101288066 101288087 -54342033 + AT_rich Low_complexity Low_complexity 1 21 0 6 1357 571 192 250 51 chr4 101290450 101290626 -54339494 + B3 SINE B2 1 211 -5 6 1357 235 0 0 54 chr4 101290665 101290702 -54339418 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1357 822 68 8 0 chr4 101290702 101290819 -54339301 - B1_Mm SINE Alu -6 141 24 6 1357 304 242 30 84 chr4 101290723 101290854 -54339266 - MT2B LTR ERVL -325 276 153 6 1357 634 299 85 57 chr4 101291658 101292150 -54337970 - Lx9 LINE L1 -18 7626 7121 6 1357 195 322 101 62 chr4 101292308 101292437 -54337683 - MIR SINE MIR -98 164 31 6 1357 832 161 0 7 chr4 101293423 101293561 -54336559 + B1_Mur1 SINE Alu 2 138 -11 6 1357 1350 140 51 0 chr4 101294494 101294708 -54335412 - URR1B DNA MER1_type 0 225 1 6 1357 1129 244 5 9 chr4 101294875 101295098 -54335022 - ID_B1 SINE B4 -2 222 1 6 1357 452 270 95 74 chr4 101295315 101295599 -54334521 + B4 SINE B4 3 292 0 6 1357 295 196 20 34 chr4 101295617 101295765 -54334355 + (CA)n Simple_repeat Simple_repeat 2 147 0 6 1357 329 184 17 40 chr4 101295795 101295970 -54334150 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1357 393 312 34 12 chr4 101296495 101296674 -54333446 + MER33 DNA MER1_type 2 184 -140 6 1357 398 143 47 20 chr4 101297188 101297338 -54332782 + (TG)n Simple_repeat Simple_repeat 2 155 0 6 1357 1516 41 5 58 chr4 101297505 101297710 -54332410 - B2_Mm2 SINE B2 -1 194 1 6 1357 264 255 94 21 chr4 101297960 101298056 -54332064 - L2c LINE L2 -50 3337 3235 6 1357 459 0 0 0 chr4 101298519 101298570 -54331550 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1357 299 33 32 48 chr4 101298660 101298723 -54331397 + (TTTTTG)n Simple_repeat Simple_repeat 1 62 0 7 1357 225 355 0 0 chr4 101298729 101298805 -54331315 + MIRc SINE MIR 116 191 -77 7 1357 874 292 119 21 chr4 101298838 101299399 -54330721 - L1MB4 LINE L1 -270 6042 5406 7 1357 1759 123 141 3 chr4 101299399 101299726 -54330394 + ORR1D1 LTR MaLR 1 372 -2 7 1357 874 281 58 84 chr4 101299726 101300060 -54330060 - L1MB4 LINE L1 -775 5405 5076 7 1357 970 230 10 10 chr4 101300065 101300263 -54329857 + B3 SINE B2 12 209 -7 7 1357 2331 283 72 157 chr4 101301381 101301434 -54328686 + L1_Mur3 LINE L1 3055 3101 -2779 7 1357 1367 96 0 5 chr4 101301434 101301622 -54328498 + B2_Mm2 SINE B2 2 188 -7 7 1357 2331 283 72 157 chr4 101301622 101301958 -54328162 + L1_Mur3 LINE L1 3102 3464 -2416 7 1357 180 0 0 0 chr4 101301958 101301978 -54328142 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1357 2331 283 72 157 chr4 101301978 101303020 -54327100 + L1_Mur3 LINE L1 3465 4497 -1383 7 1357 728 168 8 0 chr4 101303020 101303145 -54326975 + B3 SINE B2 5 130 -86 7 1357 2331 283 72 157 chr4 101303145 101303192 -54326928 + L1_Mur3 LINE L1 4498 4543 -1337 7 1357 618 71 0 0 chr4 101303192 101303277 -54326843 + B1_Mm SINE Alu 59 143 -4 7 1357 2331 283 72 157 chr4 101303277 101303306 -54326814 + L1_Mur3 LINE L1 4544 4575 -1305 7 1357 269 109 22 0 chr4 101303306 101303352 -54326768 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1357 2331 283 72 157 chr4 101303352 101304086 -54326034 + L1_Mur3 LINE L1 4576 5271 -609 7 1357 920 139 15 0 chr4 101304086 101304223 -54325897 + B1_Mur4 SINE Alu 5 143 -7 7 1357 2331 283 72 157 chr4 101304223 101304469 -54325651 + L1_Mur3 LINE L1 5272 5522 -358 7 1357 453 214 0 0 chr4 101304587 101304690 -54325430 + CT-rich Low_complexity Low_complexity 2 104 0 7 1357 372 167 0 0 chr4 101304704 101304776 -54325344 + (TCCA)n Simple_repeat Simple_repeat 3 74 0 7 1357 286 269 145 8 chr4 101305141 101305272 -54324848 - L1MD3 LINE L1 -1198 6797 6649 7 1357 222 206 0 0 chr4 101305285 101305348 -54324772 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1357 431 216 94 21 chr4 101305870 101306002 -54324118 + B1F SINE Alu 6 142 -7 7 1357 1269 91 80 0 chr4 101306109 101306285 -54323835 - B2_Mm2 SINE B2 -5 190 1 7 1357 210 71 0 0 chr4 101306925 101306953 -54323167 + (CAT)n Simple_repeat Simple_repeat 3 30 0 7 1357 222 291 38 0 chr4 101308165 101308244 -54321876 - MIRb SINE MIR -9 259 178 7 1357 191 250 0 59 chr4 101308774 101308825 -54321295 - MIR SINE MIR -103 159 112 7 1357 241 383 14 21 chr4 101309122 101309266 -54320854 + MIRb SINE MIR 52 194 -74 7 1357 614 302 72 55 chr4 101309571 101309918 -54320202 - ORR1E LTR MaLR -6 353 1 7 1357 894 149 35 65 chr4 101310588 101310789 -54319331 + B2_Mm2 SINE B2 1 195 0 7 1357 945 169 106 23 chr4 101310988 101311206 -54318914 - ORR1D1 LTR MaLR -138 236 1 7 1357 205 206 51 76 chr4 101311277 101311356 -54318764 - L2c LINE L2 -4 3383 3307 7 1357 28 29 0 0 chr4 101314697 101314732 -54315388 + AT_rich Low_complexity Low_complexity 1 35 0 7 1357 202 0 91 0 chr4 101314911 101314944 -54315176 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7 1357 551 241 154 51 chr4 101315446 101315621 -54314499 + B3A SINE B2 1 193 -5 7 1357 231 36 0 0 chr4 101315831 101315859 -54314261 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 7 1357 876 160 206 11 chr4 101316098 101316287 -54313833 - URR1A DNA MER1_type 0 226 1 7 1357 227 287 75 37 chr4 101317527 101317661 -54312459 + MER34 LTR ERV1 383 521 -21 7 1357 2031 102 19 0 chr4 101317941 101318256 -54311864 - ORR1A2 LTR MaLR 0 327 7 7 1358 255 125 0 0 chr4 101318984 101319024 -54311096 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1358 661 219 20 7 chr4 101321812 101321959 -54308161 + RSINE1 SINE B4 3 151 -14 7 1358 252 268 36 12 chr4 101322091 101322174 -54307946 + MLT1C LTR MaLR 356 440 -27 7 1358 212 0 0 35 chr4 101322674 101322703 -54307417 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 7 1358 397 254 26 35 chr4 101322918 101323032 -54307088 + RSINE1 SINE B4 5 117 -48 7 1358 374 300 155 0 chr4 101323631 101323831 -54306289 - MIRb SINE MIR -4 258 28 7 1358 543 254 40 27 chr4 101324618 101324768 -54305352 - RSINE1 SINE B4 -12 153 2 7 1358 837 264 38 31 chr4 101325121 101325410 -54304710 - B4A SINE B4 0 292 2 7 1358 1604 193 92 28 chr4 101326082 101326378 -54303742 - MTD LTR MaLR 0 419 95 7 1358 810 202 107 60 chr4 101326378 101326594 -54303526 - URR1A DNA MER1_type 0 226 1 7 1358 1604 193 92 28 chr4 101326594 101326687 -54303433 - MTD LTR MaLR -325 94 5 7 1358 389 233 0 0 chr4 101328396 101328469 -54301651 + ID4_ SINE ID 9 81 -2 7 1358 231 36 0 0 chr4 101329985 101330013 -54300107 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1358 300 237 0 26 chr4 101332245 101332323 -54297797 - PB1D10 SINE Alu 0 117 42 7 1358 729 206 62 52 chr4 101332409 101332603 -54297517 + B3A SINE B2 1 196 -2 7 1358 762 188 14 0 chr4 101335335 101335473 -54294647 - B1_Mur2 SINE Alu -8 141 2 7 1358 183 100 0 0 chr4 101335542 101335572 -54294548 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1358 2397 137 34 8 chr4 101335775 101336159 -54293961 + ORR1B1 LTR MaLR 1 394 0 7 1358 196 229 70 79 chr4 101336229 101336272 -54293848 + L2 LINE L2 2270 2307 -1112 7 1358 832 230 291 41 chr4 101336272 101336567 -54293553 - ORR1D2 LTR MaLR -1 369 1 7 1358 196 229 70 79 chr4 101336567 101336637 -54293483 + L2 LINE L2 2308 2382 -1037 7 1358 373 252 114 0 chr4 101336789 101336920 -54293200 - L1MB7 LINE L1 -64 6120 5975 7 1358 347 260 207 24 chr4 101337143 101337356 -54292764 + Charlie1 DNA MER1_type 148 399 -2382 7 1358 485 291 75 46 chr4 101337390 101337671 -54292449 + ORR1E LTR MaLR 1 289 -70 7 1358 234 218 0 18 chr4 101337765 101337821 -54292299 + B4A SINE B4 81 135 -157 7 1358 321 159 98 57 chr4 101338017 101338140 -54291980 + Lx7 LINE L1 7578 7683 -13 7 1358 685 296 141 67 chr4 101338957 101339377 -54290743 + MLT2B1 LTR ERVL 4 454 -66 7 1358 875 92 19 13 chr4 101339382 101339536 -54290584 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 7 1358 561 195 35 9 chr4 101340033 101340138 -54289982 + B1_Mur4 SINE Alu 32 140 -10 7 1358 186 43 0 0 chr4 101340138 101340161 -54289959 + (GAA)n Simple_repeat Simple_repeat 2 24 0 7 1358 180 0 0 0 chr4 101340301 101340321 -54289799 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1358 1111 79 0 24 chr4 101340434 101340602 -54289518 - B2_Mm2 SINE B2 -28 167 4 7 1358 2003 134 3 3 chr4 101340631 101340953 -54289167 - ORR1B2 LTR MaLR -45 322 1 7 1358 503 312 63 19 chr4 101340955 101341161 -54288959 + MTD LTR MaLR 205 419 0 7 1358 775 189 7 47 chr4 101341248 101341398 -54288722 + B1_Mur3 SINE Alu 1 144 -5 7 1358 284 244 13 0 chr4 101343270 101343348 -54286772 - RLTR19C LTR ERVK -409 97 19 7 1358 569 243 41 151 chr4 101343804 101344022 -54286098 + B4 SINE B4 97 290 -2 7 1358 387 0 0 0 chr4 101344053 101344096 -54286024 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1358 297 0 0 0 chr4 101344096 101344128 -54285992 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1358 1941 136 10 6 chr4 101344533 101344845 -54285275 + ORR1A2 LTR MaLR 1 313 -14 7 1358 1177 48 0 7 chr4 101344846 101344992 -54285128 - L1_Mus1 LINE L1 -588 5979 5835 7 1358 989 265 169 9 chr4 101345182 101345707 -54284413 - L1MCa LINE L1 -4106 2402 1794 7 1358 439 265 112 57 chr4 101345743 101346127 -54283993 - L1MCa LINE L1 -5292 1216 812 7 1358 200 289 0 0 chr4 101346132 101346177 -54283943 + polypyrimidine Low_complexity Low_complexity 4 48 0 7 1358 223 341 0 96 chr4 101346178 101346272 -54283848 - PB1D10 SINE Alu -21 96 12 7 1358 623 252 198 33 chr4 101346289 101346618 -54283502 - L1MCa LINE L1 -5719 789 407 7 1358 345 229 33 67 chr4 101346780 101346930 -54283190 + RMER15 LTR ERVL 4 148 -427 7 1358 504 316 15 5 chr4 101346978 101347175 -54282945 + RMER15 LTR ERVL 336 534 -41 7 1358 205 81 53 26 chr4 101347273 101347311 -54282809 + A-rich Low_complexity Low_complexity 1 39 0 7 1358 324 0 0 0 chr4 101347723 101347759 -54282361 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1358 913 164 0 7 chr4 101347781 101347928 -54282192 - B1_Mur2 SINE Alu -2 147 2 7 1358 219 36 0 0 chr4 101348968 101348996 -54281124 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1358 809 112 8 20 chr4 101349757 101350012 -54280108 + (TCTA)n Simple_repeat Simple_repeat 1 251 0 7 1358 2254 273 33 71 chr4 101350986 101351614 -54278506 - Lx8 LINE L1 -34 7439 6823 7 1358 441 0 0 0 chr4 101351614 101351663 -54278457 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 7 1358 1105 65 0 0 chr4 101351667 101351805 -54278315 - B1_Mus2 SINE Alu -8 139 2 7 1358 2254 273 33 71 chr4 101351805 101352012 -54278108 - Lx8 LINE L1 -651 6822 6631 7 1358 7453 63 10 0 chr4 101352014 101352948 -54277172 + L1Md_F2 LINE L1 4642 5584 -299 7 1358 8056 47 15 8 chr4 101352950 101353938 -54276182 + L1Md_F2 LINE L1 5587 6581 -1 7 1358 1479 285 35 28 chr4 101353942 101354371 -54275749 - Lx8 LINE L1 -839 6634 6203 7 1358 414 0 0 0 chr4 101354373 101354419 -54275701 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1358 308 235 0 20 chr4 101354643 101354743 -54275377 + (TATG)n Simple_repeat Simple_repeat 1 98 0 7 1358 720 253 63 0 chr4 101354792 101354966 -54275154 + ORR1D2 LTR MaLR 3 187 -183 7 1358 201 355 94 33 chr4 101355153 101355398 -54274722 + L2a LINE L2 3129 3388 -38 7 1358 324 0 0 0 chr4 101356248 101356284 -54273836 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1358 284 99 356 20 chr4 101359852 101359953 -54270167 - B2_Mm2 SINE B2 -14 181 47 7 1358 1206 109 11 0 chr4 101359998 101360173 -54269947 - B2_Mm1t SINE B2 -14 179 3 7 1358 748 266 35 6 chr4 101360207 101360381 -54269739 - B3A SINE B2 -18 180 2 7 1358 738 34 0 0 chr4 101360715 101360804 -54269316 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 7 1358 536 258 31 15 chr4 101361233 101361363 -54268757 - RSINE1 SINE B4 -17 148 17 7 1358 26 74 0 0 chr4 101361472 101361526 -54268594 + AT_rich Low_complexity Low_complexity 1 54 0 7 1358 1322 76 12 0 chr4 101361526 101361698 -54268422 - B2_Mm1t SINE B2 -18 175 2 7 1358 507 33 0 0 chr4 101362700 101362761 -54267359 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1358 207 0 0 0 chr4 101362761 101362783 -54267337 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1358 333 0 0 0 chr4 101362811 101362848 -54267272 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1358 922 215 16 26 chr4 101362850 101363041 -54267079 - B3 SINE B2 -27 189 1 7 1358 1247 134 8 118 chr4 101363963 101364217 -54265903 - URR1A DNA MER1_type 0 226 1 8 1358 338 300 60 23 chr4 101364448 101364471 -54265649 + B1F SINE Alu 1 138 -11 8 1358 402 294 18 9 chr4 101364471 101364581 -54265539 + ID_B1 SINE B4 103 213 -11 8 1358 687 261 27 42 chr4 101364582 101364961 -54265159 + Lx7 LINE L1 5688 6103 -1541 8 1358 234 156 0 0 chr4 101364969 101365014 -54265106 + GA-rich Low_complexity Low_complexity 1 45 0 8 1358 180 0 0 0 chr4 101365806 101365826 -54264294 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 8 1358 30 0 0 0 chr4 101366093 101366123 -54263997 + AT_rich Low_complexity Low_complexity 1 30 0 8 1358 314 23 23 0 chr4 101366128 101366171 -54263949 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1358 678 97 3 6 chr4 101366171 101366283 -54263837 - B1_Mus1 SINE Alu -10 110 1 8 1358 224 241 0 33 chr4 101366313 101366373 -54263747 + CT-rich Low_complexity Low_complexity 1 58 0 8 1358 455 290 21 14 chr4 101366376 101366516 -54263604 - Lx9 LINE L1 -239 7405 7265 8 1358 1290 189 111 15 chr4 101366540 101366839 -54263281 - MTD LTR MaLR -16 403 94 8 1358 271 290 0 0 chr4 101366976 101367045 -54263075 - ID4_ SINE ID -3 80 12 8 1358 500 230 9 17 chr4 101367067 101367182 -54262938 - PB1D10 SINE Alu -3 114 1 8 1358 180 235 0 0 chr4 101367671 101367739 -54262381 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1358 210 119 0 45 chr4 101367739 101367783 -54262337 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 8 1358 789 150 23 0 chr4 101367784 101367917 -54262203 - B1_Mur4 SINE Alu -9 141 6 8 1358 523 254 0 9 chr4 101368695 101368810 -54261310 - B3A SINE B2 -83 115 2 8 1358 1731 303 80 53 chr4 101368881 101370163 -54259957 - L1MC3 LINE L1 -130 7655 6340 8 1358 277 253 21 52 chr4 101370985 101371081 -54259039 + LTR16C LTR ERVL 388 480 -9 8 1358 330 107 0 0 chr4 101371315 101371371 -54258749 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1358 186 43 0 0 chr4 101371447 101371470 -54258650 + (TTG)n Simple_repeat Simple_repeat 3 25 0 8 1358 852 141 0 47 chr4 101371484 101371633 -54258487 - B1_Mur4 SINE Alu 0 150 9 8 1358 342 303 82 0 chr4 101371664 101371786 -54258334 - B4A SINE B4 -118 174 43 8 1358 209 184 0 0 chr4 101371890 101371928 -54258192 + GA-rich Low_complexity Low_complexity 1 38 0 8 1358 189 171 0 0 chr4 101372354 101372389 -54257731 + T-rich Low_complexity Low_complexity 1 35 0 8 1358 207 0 0 0 chr4 101375651 101375674 -54254446 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1358 1167 63 7 0 chr4 101375674 101375817 -54254303 - B1_Mus2 SINE Alu -2 145 2 8 1358 299 319 137 41 chr4 101376285 101376599 -54253521 - L2a LINE L2 -102 3324 2981 8 1358 307 285 8 15 chr4 101376714 101376818 -54253302 + GA-rich Low_complexity Low_complexity 1 104 0 8 1358 225 65 0 0 chr4 101376818 101376849 -54253271 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1358 307 285 8 15 chr4 101376849 101376876 -54253244 + polypurine Low_complexity Low_complexity 105 131 0 8 1358 1150 296 171 35 chr4 101376882 101378142 -54251978 + L1MC3 LINE L1 5890 7320 -465 8 1358 267 270 56 42 chr4 101378335 101378478 -54251642 + L1MC3 LINE L1 7626 7770 -15 8 1358 280 299 23 0 chr4 101378519 101378606 -54251514 + MER5B DNA MER1_type 50 138 -40 8 1358 781 303 29 11 chr4 101378891 101379023 -54251097 + B4A SINE B4 1 137 -155 8 1358 432 0 0 0 chr4 101379023 101379071 -54251049 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1358 781 303 29 11 chr4 101379071 101379218 -54250902 + B4A SINE B4 138 285 -7 8 1358 859 136 261 0 chr4 101379231 101379407 -54250713 + URR1A DNA MER1_type 5 226 0 8 1358 24 0 0 0 chr4 101380220 101380244 -54249876 + AT_rich Low_complexity Low_complexity 1 24 0 8 1358 673 170 84 122 chr4 101381541 101381755 -54248365 + B3 SINE B2 1 206 -10 8 1358 279 0 0 0 chr4 101381909 101381940 -54248180 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1358 470 303 111 4 chr4 101383498 101383733 -54246387 - MER2 DNA MER2_type 0 345 86 8 1358 531 305 17 28 chr4 101385013 101385192 -54244928 - B4A SINE B4 -113 179 3 8 1358 270 0 0 0 chr4 101385204 101385234 -54244886 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1358 298 280 5 64 chr4 101385686 101385873 -54244247 + C-rich Low_complexity Low_complexity 4 179 0 8 1358 232 149 136 0 chr4 101386011 101386165 -54243955 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 8 1358 378 0 0 0 chr4 101386342 101386384 -54243736 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 8 1358 675 260 30 10 chr4 101386385 101386565 -54243555 - B3A SINE B2 -38 178 1 8 1358 3170 61 18 0 chr4 101387358 101387751 -54242369 + MTB LTR MaLR 1 400 0 8 1358 216 0 0 0 chr4 101387774 101387798 -54242322 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1358 261 57 0 0 chr4 101387884 101387919 -54242201 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1358 568 97 11 11 chr4 101388850 101388944 -54241176 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 8 1358 429 70 0 0 chr4 101389601 101389658 -54240462 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 8 1358 664 253 107 0 chr4 101392479 101392657 -54237463 - ID_B1 SINE B4 -26 198 2 8 1358 341 335 185 63 chr4 101393002 101393822 -54236298 + L2a LINE L2 1855 2789 -630 8 1358 820 254 25 25 chr4 101393822 101394020 -54236100 + B3A SINE B2 1 198 0 8 1358 943 206 58 58 chr4 101394021 101394227 -54235893 - B3 SINE B2 -10 206 1 8 1358 341 329 173 50 chr4 101394227 101394607 -54235513 + L2a LINE L2 2790 3242 -184 8 1358 222 37 0 0 chr4 101394746 101394773 -54235347 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1358 1094 158 104 38 chr4 101394832 101395043 -54235077 - URR1A DNA MER1_type 0 226 2 8 1358 315 248 36 45 chr4 101395491 101395601 -54234519 - MLT1A1 LTR MaLR -16 392 284 8 1358 508 227 109 0 chr4 101395940 101396059 -54234061 + B1_Mur1 SINE Alu 1 132 -17 8 1358 180 0 0 0 chr4 101396429 101396449 -54233671 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1358 215 138 0 79 chr4 101397039 101397102 -54233018 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 8 1358 705 236 7 27 chr4 101397120 101397268 -54232852 - RSINE1 SINE B4 -19 146 2 8 1358 836 178 57 13 chr4 101397349 101397534 -54232586 - B3A SINE B2 -9 186 1 8 1358 363 289 14 72 chr4 101397573 101397711 -54232409 - RMER10B LTR ERVL 0 398 269 8 1358 478 261 67 30 chr4 101397970 101398104 -54232016 - B1F1 SINE Alu 0 149 11 8 1358 704 255 40 0 chr4 101398145 101398294 -54231826 + B3 SINE B2 1 155 -61 8 1358 206 128 26 0 chr4 101399085 101399124 -54230996 - L2a LINE L2 -1 3425 3386 8 1358 950 305 11 25 chr4 101399176 101399462 -54230658 + B4A SINE B4 7 288 -4 8 1358 270 241 70 26 chr4 101399525 101399640 -54230480 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 8 1358 1077 237 129 42 chr4 101399640 101399982 -54230138 + MTC LTR MaLR 1 383 -36 8 1358 290 178 46 33 chr4 101400026 101400177 -54229943 + (CATA)n Simple_repeat Simple_repeat 4 156 0 8 1358 259 218 57 11 chr4 101400185 101400273 -54229847 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 1358 222 205 24 12 chr4 101400285 101400369 -54229751 + (CA)n Simple_repeat Simple_repeat 1 85 0 8 1358 1665 40 5 0 chr4 101400916 101401116 -54229004 - L1Md_F2 LINE L1 0 6582 6382 8 1358 3554 65 4 66 chr4 101401209 101401707 -54228413 - L1Md_F2 LINE L1 -3 6579 6113 8 1358 388 225 172 136 chr4 101401814 101402036 -54228084 - MLT2B4 LTR ERVL -1 555 345 8 1358 417 271 23 0 chr4 101402146 101402275 -54227845 - L1M2 LINE L1 -802 5510 5379 8 1358 410 29 29 29 chr4 101402275 101402345 -54227775 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1358 653 36 0 12 chr4 101402345 101402430 -54227690 + (TA)n Simple_repeat Simple_repeat 2 85 0 8 1358 892 225 43 48 chr4 101402430 101402640 -54227480 - B3 SINE B2 -7 209 1 8 1358 231 114 0 0 chr4 101402713 101402748 -54227372 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1358 439 222 203 16 chr4 101402748 101402940 -54227180 + L1ME1 LINE L1 5696 5923 -256 8 1358 354 292 111 19 chr4 101402965 101403073 -54227047 + PB1D10 SINE Alu 5 119 -8 8 1358 1497 285 98 34 chr4 101403466 101403782 -54226338 - L1M2 LINE L1 -868 5275 4939 8 1358 501 17 0 0 chr4 101403782 101403840 -54226280 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 8 1358 189 0 0 0 chr4 101403840 101403861 -54226259 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 8 1358 1497 285 98 34 chr4 101403861 101404091 -54226029 - L1M2 LINE L1 -1205 4938 4710 8 1358 697 207 14 36 chr4 101404091 101404231 -54225889 - B1_Mus2 SINE Alu -10 137 1 8 1358 1497 285 98 34 chr4 101404231 101404528 -54225592 - L1M2 LINE L1 -1434 4709 4377 8 1358 513 198 9 19 chr4 101404555 101404663 -54225457 - PB1 SINE Alu -2 125 19 8 1358 23 0 0 0 chr4 101404673 101404696 -54225424 + AT_rich Low_complexity Low_complexity 1 23 0 8 1358 368 258 293 6 chr4 101404710 101405036 -54225084 - L1MC1 LINE L1 -173 6160 5742 8 1358 36 40 0 0 chr4 101406297 101406347 -54223773 + AT_rich Low_complexity Low_complexity 1 50 0 8 1358 295 356 89 0 chr4 101406805 101406940 -54223180 - MER20 DNA MER1_type -2 217 71 8 1358 365 182 50 55 chr4 101406937 101407026 -54223094 + PB1D7 SINE Alu 34 127 0 8 1358 528 291 8 0 chr4 101407138 101407265 -54222855 + B3A SINE B2 2 129 -69 8 1358 331 305 50 5 chr4 101407679 101407818 -54222302 - B3 SINE B2 0 216 76 8 1358 634 351 4 33 chr4 101409149 101409326 -54220794 + Lx8 LINE L1 7009 7176 -297 8 1358 1638 170 130 24 chr4 101409326 101409664 -54220456 - ORR1D1 LTR MaLR 0 374 1 8 1358 634 351 4 33 chr4 101409664 101409760 -54220360 + Lx8 LINE L1 7177 7273 -200 8 1358 233 137 0 56 chr4 101409959 101410013 -54220107 + B2_Mm2 SINE B2 126 176 -19 8 1358 665 247 59 5 chr4 101410554 101410741 -54219379 + L1M3 LINE L1 3823 4019 -2121 8 1358 834 253 177 38 chr4 101411650 101411742 -54218378 + MTD LTR MaLR 1 96 -323 8 1358 3553 33 8 0 chr4 101411742 101412135 -54217985 + MTA_Mm LTR MaLR 1 396 0 8 1358 834 256 165 44 chr4 101412135 101412418 -54217702 + MTD LTR MaLR 97 393 -26 8 1358 2367 181 136 0 chr4 101413472 101413964 -54216156 - RMER15 LTR ERVL -16 559 1 9 1358 192 77 0 0 chr4 101415847 101415873 -54214247 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1358 922 254 63 66 chr4 101416139 101416426 -54213694 - B4 SINE B4 -6 286 1 9 1358 2026 150 111 14 chr4 101416458 101416810 -54213310 - ORR1B1 LTR MaLR -8 386 1 9 1358 351 297 177 47 chr4 101417065 101417505 -54212615 - L1MEc LINE L1 -3506 2813 2317 9 1358 442 268 67 0 chr4 101417832 101417996 -54212124 - L1MEc LINE L1 -4554 1846 1672 9 1358 697 322 95 33 chr4 101419030 101419094 -54211026 - B4A SINE B4 -2 290 217 9 1358 225 0 0 0 chr4 101419094 101419119 -54211001 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 9 1358 697 322 95 33 chr4 101419119 101419327 -54210793 - B4A SINE B4 -76 216 2 9 1358 936 43 0 0 chr4 101419729 101419846 -54210274 - B1_Mm SINE Alu 0 147 31 9 1358 305 316 119 19 chr4 101420455 101420665 -54209455 - L2 LINE L2 -821 2598 2368 9 1358 603 40 0 0 chr4 101420667 101420741 -54209379 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 9 1358 24 0 0 0 chr4 101421214 101421238 -54208882 + AT_rich Low_complexity Low_complexity 1 24 0 9 1358 551 183 15 15 chr4 101421238 101421443 -54208677 - RMER17D2 LTR ERVK -303 506 302 9 1358 664 237 92 38 chr4 101421840 101422024 -54208096 + B3A SINE B2 1 194 -4 9 1358 893 176 14 0 chr4 101423206 101423348 -54206772 - B1_Mur4 SINE Alu -5 145 2 9 1358 299 285 203 0 chr4 101423563 101423686 -54206434 - L2a LINE L2 -202 3224 3077 9 1358 233 296 148 0 chr4 101424519 101424634 -54205486 - L1M5 LINE L1 -3323 2823 2692 9 1358 351 275 65 11 chr4 101425282 101425374 -54204746 + B1F SINE Alu 1 97 -52 9 1358 378 0 0 0 chr4 101425481 101425523 -54204597 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1358 562 244 0 0 chr4 101425526 101425641 -54204479 - B4A SINE B4 -39 253 139 9 1358 42036 6 0 0 chr4 101426186 101432531 -54197589 - L1Md_A LINE L1 0 6582 237 9 1358 256 143 45 0 chr4 101433791 101433849 -54196271 + MIR SINE MIR 103 175 -101 9 1358 283 326 77 64 chr4 101434960 101435271 -54194849 - ORR1E LTR MaLR -26 333 19 9 1358 234 0 0 0 chr4 101435892 101435918 -54194202 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 9 1358 243 158 0 0 chr4 101435953 101435991 -54194129 - B2_Mm2 SINE B2 -71 124 87 9 1358 1224 81 0 6 chr4 101436663 101436825 -54193295 + B2_Mm2 SINE B2 2 162 -33 9 1358 180 0 0 0 chr4 101436825 101436845 -54193275 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1358 620 300 47 0 chr4 101436909 101437059 -54193061 - RSINE1 SINE B4 -6 159 3 9 1358 1101 62 0 0 chr4 101439451 101439597 -54190523 + (CA)n Simple_repeat Simple_repeat 2 147 0 9 1358 327 109 31 15 chr4 101440270 101440335 -54189785 + URR1B DNA MER1_type 156 221 -4 9 1358 31 44 0 0 chr4 101443855 101443900 -54186220 + AT_rich Low_complexity Low_complexity 1 45 0 9 1358 375 257 58 29 chr4 101444097 101444201 -54185919 - B1F SINE Alu -18 131 25 9 1358 278 265 127 8 chr4 101444404 101444522 -54185598 - Lx8 LINE L1 -196 7277 7146 9 1358 7965 29 3 1 chr4 101445673 101446708 -54183412 - L1Md_F2 LINE L1 0 6582 5546 9 1358 317 64 0 0 chr4 101446708 101446755 -54183365 + L1_Mm LINE L1 1312 1358 -4525 9 1358 401 321 167 0 chr4 101447949 101448117 -54182003 + MER3 DNA MER1_type 5 200 -9 9 1358 516 72 0 0 chr4 101448732 101448801 -54181319 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1358 273 254 0 0 chr4 101448832 101448887 -54181233 + RSINE1 SINE B4 12 66 -99 9 1358 357 24 0 0 chr4 101448923 101448965 -54181155 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1358 227 104 21 0 chr4 101448966 101449014 -54181106 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 9 1358 333 268 50 19 chr4 101449046 101449206 -54180914 - L1MC3 LINE L1 -21 7764 7600 9 1358 378 262 141 9 chr4 101449459 101449686 -54180434 - L1MC3 LINE L1 -559 7226 6970 9 1359 1036 115 0 0 chr4 101450041 101450180 -54179940 + B1_Mus2 SINE Alu 2 140 -7 9 1359 207 0 0 0 chr4 101450180 101450203 -54179917 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 9 1359 309 68 0 0 chr4 101450322 101450366 -54179754 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1359 272 250 0 62 chr4 101450366 101450430 -54179690 - RSINE1 SINE B4 -70 95 36 9 1359 588 302 21 28 chr4 101450568 101450857 -54179263 + L1MC3 LINE L1 5288 5574 -2211 9 1359 698 295 110 31 chr4 101450973 101451462 -54178658 + L1MC3 LINE L1 6040 6567 -1218 9 1359 773 289 87 26 chr4 101452963 101453353 -54176767 - Lx9 LINE L1 -171 7473 7060 9 1359 23 0 0 0 chr4 101453848 101453871 -54176249 + AT_rich Low_complexity Low_complexity 1 23 0 9 1359 504 299 7 7 chr4 101453891 101454036 -54176084 - RSINE1 SINE B4 -17 148 4 9 1359 29 0 0 0 chr4 101454234 101454263 -54175857 + AT_rich Low_complexity Low_complexity 1 29 0 9 1359 434 260 0 57 chr4 101454275 101454381 -54175739 - RSINE1 SINE B4 0 165 66 9 1359 740 228 0 14 chr4 101454382 101454520 -54175600 - B1_Mur1 SINE Alu -11 138 3 9 1359 728 33 0 0 chr4 101455571 101455661 -54174459 - BC1_Mm scRNA scRNA -62 90 1 9 1359 1848 100 21 142 chr4 101456595 101456969 -54173151 + ORR1A4 LTR MaLR 1 329 0 9 1359 7979 155 58 106 chr4 101456969 101459030 -54171090 + ORR1A4-int LTR MaLR 1 1963 0 9 1359 1038 148 82 132 chr4 101459037 101459293 -54170827 + ORR1A4 LTR MaLR 41 283 -111 9 1359 2759 18 21 0 chr4 101459293 101459624 -54170496 + ORR1A0 LTR MaLR 1 338 -8 9 1359 12940 52 66 1 chr4 101459628 101461311 -54168809 + ORR1A0-int LTR MaLR 1 1792 0 9 1359 3086 23 0 0 chr4 101461311 101461657 -54168463 + ORR1A0 LTR MaLR 1 346 0 9 1359 738 83 73 9 chr4 101461657 101461767 -54168353 + ORR1A4 LTR MaLR 213 329 0 9 1359 309 324 28 28 chr4 101462055 101462163 -54167957 - RSINE1 SINE B4 -55 110 3 9 1359 23 33 0 0 chr4 101462276 101462306 -54167814 + AT_rich Low_complexity Low_complexity 1 30 0 9 1359 727 246 18 58 chr4 101463086 101463310 -54166810 - B3 SINE B2 -1 215 1 9 1359 727 159 45 15 chr4 101463758 101463892 -54166228 + B1_Mus1 SINE Alu 9 146 -2 9 1359 23 86 0 0 chr4 101466266 101466324 -54163796 + AT_rich Low_complexity Low_complexity 1 58 0 9 1359 502 229 20 46 chr4 101466691 101466842 -54163278 + B1F SINE Alu 3 149 0 9 1359 1015 198 21 0 chr4 101467518 101467705 -54162415 - B3A SINE B2 -7 191 1 9 1359 964 139 0 14 chr4 101467873 101468019 -54162101 + B1_Mur4 SINE Alu 1 144 -6 9 1359 184 330 61 41 chr4 101468069 101468167 -54161953 - MIRb SINE MIR -147 121 22 9 1359 472 281 78 55 chr4 101468270 101468736 -54161384 + L1M4 LINE L1 5313 5789 -2206 9 1359 38 51 0 0 chr4 101468840 101468899 -54161221 + AT_rich Low_complexity Low_complexity 1 59 0 9 1359 1284 239 62 70 chr4 101469070 101469264 -54160856 - ORR1C2 LTR MaLR 0 384 188 9 1359 279 54 0 0 chr4 101469264 101469301 -54160819 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 9 1359 1284 239 62 70 chr4 101469301 101469493 -54160627 - ORR1C2 LTR MaLR -197 187 3 9 1359 2832 180 5 82 chr4 101469493 101469868 -54160252 - ORR1C2-int LTR MaLR 0 1370 1031 9 1359 2603 51 6 6 chr4 101469868 101470202 -54159918 - L1Md_F2 LINE L1 -1 6581 6248 9 1359 2832 180 5 82 chr4 101470202 101470444 -54159676 - ORR1C2-int LTR MaLR -340 1030 801 9 1359 36397 43 0 3 chr4 101470482 101476812 -54153308 - L1Md_T LINE L1 0 6585 178 9 1359 1619 263 82 42 chr4 101476812 101477359 -54152761 - ORR1C2-int LTR MaLR -538 832 264 9 1359 412 207 7 188 chr4 101477351 101477500 -54152620 - ORR1C2 LTR MaLR -252 122 1 9 1359 352 329 111 72 chr4 101477570 101477832 -54152288 + B4A SINE B4 2 273 -19 9 1359 672 223 206 0 chr4 101479204 101479379 -54150741 - B3 SINE B2 -5 211 1 9 1359 3022 121 25 45 chr4 101479780 101480351 -54149769 - Lx3_Mus LINE L1 -620 6389 5831 9 1359 618 111 108 25 chr4 101480351 101480471 -54149649 + B2_Mm2 SINE B2 65 194 -1 9 1359 580 53 13 0 chr4 101480476 101480552 -54149568 + B2_Mm2 SINE B2 3 79 -116 9 1359 1594 166 89 7 chr4 101480546 101480826 -54149294 - ORR1B2 LTR MaLR -41 326 24 9 1359 25 0 0 0 chr4 101482240 101482265 -54147855 + AT_rich Low_complexity Low_complexity 1 25 0 9 1359 251 232 43 0 chr4 101482398 101482467 -54147653 + CT-rich Low_complexity Low_complexity 1 72 0 9 1359 515 196 134 0 chr4 101483195 101483307 -54146813 + B1_Mus1 SINE Alu 1 127 -21 9 1359 1178 62 0 7 chr4 101483325 101483472 -54146648 + B1_Mus1 SINE Alu 1 146 -2 9 1359 257 55 53 40 chr4 101483476 101483552 -54146568 + (CAAAA)n Simple_repeat Simple_repeat 4 80 0 9 1359 183 80 0 0 chr4 101483921 101483946 -54146174 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 9 1359 1203 64 6 0 chr4 101484444 101484601 -54145519 + B2_Mm1a SINE B2 1 158 -35 9 1359 279 79 0 0 chr4 101484601 101484639 -54145481 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 9 1359 26 0 0 0 chr4 101486241 101486267 -54143853 + AT_rich Low_complexity Low_complexity 1 26 0 9 1359 228 350 118 34 chr4 101488708 101488889 -54141231 - MIR SINE MIR -30 232 42 9 1359 22 56 0 0 chr4 101491477 101491513 -54138607 + AT_rich Low_complexity Low_complexity 1 36 0 9 1359 941 29 0 115 chr4 101492477 101492633 -54137487 - BC1_Mm scRNA scRNA -14 138 1 9 1359 286 274 41 21 chr4 101492593 101492690 -54137430 - ZP3AR Satellite Satellite -77 135 37 9 1359 1627 21 5 0 chr4 101492711 101492897 -54137223 + B2_Mm1a SINE B2 2 188 -5 9 1359 641 306 0 0 chr4 101492983 101493130 -54136990 + B3A SINE B2 14 160 -38 9 1359 4009 159 16 0 chr4 101493142 101493809 -54136311 - RLTR33 LTR ERVK 0 678 1 9 1359 1702 0 0 0 chr4 101494038 101494231 -54135889 - L1Md_T LINE L1 0 6582 6390 9 1359 251 284 19 120 chr4 101494607 101494715 -54135405 - RLTR33 LTR ERVK -132 546 450 9 1359 1575 139 142 0 chr4 101495022 101495310 -54134810 - ORR1A4 LTR MaLR 0 329 1 9 1359 2312 154 42 17 chr4 101495310 101495720 -54134400 - ORR1A4-int LTR MaLR 0 1963 1544 9 1359 959 126 0 121 chr4 101495744 101495934 -54134186 - ORR1A4 LTR MaLR -162 167 1 9 1359 1594 189 37 10 chr4 101496003 101496303 -54133817 - RLTR19 LTR ERVK 0 499 192 9 1359 6851 102 6 40 chr4 101496311 101497464 -54132656 - Lx LINE L1 -2 6652 5159 9 1359 401 50 17 0 chr4 101497472 101497532 -54132588 + (TTTG)n Simple_repeat Simple_repeat 3 63 0 9 1359 1210 48 0 0 chr4 101497532 101497679 -54132441 - B1_Mus2 SINE Alu 0 147 1 9 1359 2609 90 121 10 chr4 101497704 101498108 -54132012 + RLTR44B LTR ERVK 1 449 0 9 1359 766 78 61 54 chr4 101498138 101498197 -54131923 + RLTR44-int LTR ERVK 155 216 -2596 9 1359 5131 52 5 9 chr4 101498197 101498851 -54131269 + L1Md_F2 LINE L1 5932 6582 0 1 1359 766 78 61 54 chr4 101498851 101498939 -54131181 + RLTR44-int LTR ERVK 217 303 -2509 9 1359 675 83 0 0 chr4 101499563 101499659 -54130461 + RLTR44-int LTR ERVK 778 873 -1939 9 1359 2178 106 0 9 chr4 101499659 101499991 -54130129 + RLTR44-int LTR ERVK 816 1144 -1668 9 1359 294 26 0 0 chr4 101499961 101500000 -54130120 + RLTR44-int LTR ERVK 2673 2711 -101 9 1359 872 40 0 0 chr4 101500000 101500101 -54130019 + RLTR44-int LTR ERVK 2712 2812 0 1 1359 14895 157 25 7 chr4 101500101 101503099 -54127021 - L1_Mur1 LINE L1 -720 5157 1892 2 1359 1578 173 179 3 chr4 101503091 101503416 -54126704 - L1VL2 LINE L1 -5901 434 53 3 1359 1194 122 5 0 chr4 101503417 101503606 -54126514 - RLTR19 LTR ERVK -302 197 8 4 1359 516 193 0 0 chr4 101503778 101503892 -54126228 + CT-rich Low_complexity Low_complexity 3 116 0 5 1359 545 223 7 86 chr4 101503894 101504046 -54126074 - B1_Mur1 SINE Alu -8 141 2 6 1359 221 288 17 17 chr4 101504369 101504429 -54125691 - ID SINE ID -164 60 1 7 1359 444 243 153 0 chr4 101504582 101504771 -54125349 - Lx9 LINE L1 0 7644 7427 8 1359 802 222 10 15 chr4 101504778 101504975 -54125145 + ORR1B1 LTR MaLR 8 203 -164 9 1359 3878 121 34 13 chr4 101504977 101505589 -54124531 + Lx LINE L1 6027 6651 -3 1 1359 628 123 9 9 chr4 101505610 101505725 -54124395 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 1 1359 1121 120 0 0 chr4 101505727 101505902 -54124218 + ORR1B1 LTR MaLR 218 392 -2 9 1359 879 223 0 10 chr4 101505932 101506131 -54123989 + Lx9 LINE L1 6881 7077 -567 1 1359 770 279 100 12 chr4 101506139 101506389 -54123731 - Lx9 LINE L1 -322 7322 7051 8 1359 253 222 37 0 chr4 101506502 101506556 -54123564 + Lx9 LINE L1 7352 7407 -237 1 1359 286 352 78 44 chr4 101506571 101506776 -54123344 - B3 SINE B2 -3 213 2 1 1359 459 0 0 0 chr4 101506890 101506941 -54123179 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1359 230 83 62 0 chr4 101511912 101511960 -54118160 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 1359 1054 83 21 7 chr4 101511970 101512115 -54118005 + B1_Mus1 SINE Alu 2 148 0 1 1359 756 107 0 0 chr4 101512121 101512233 -54117887 + (GA)n Simple_repeat Simple_repeat 2 113 0 1 1359 804 74 0 0 chr4 101512624 101512732 -54117388 + (TTCTCC)n Simple_repeat Simple_repeat 1 108 0 1 1359 1311 72 0 0 chr4 101512735 101512915 -54117205 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1359 978 62 0 0 chr4 101512937 101513065 -54117055 - B1_Mus1 SINE Alu -20 128 1 2 1359 228 67 0 0 chr4 101513530 101513560 -54116560 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1359 457 306 0 0 chr4 101513709 101513830 -54116290 + B1_Mur2 SINE Alu 25 145 -4 2 1359 3510 210 14 105 chr4 101513822 101514303 -54115817 + ORR1A1-int LTR MaLR 525 902 -607 2 1359 2267 33 4 4 chr4 101514303 101514576 -54115544 + L1Md_F2 LINE L1 6299 6571 -11 2 1359 3510 175 2 83 chr4 101514576 101515109 -54115011 + ORR1A1-int LTR MaLR 862 1331 -461 2 1359 420 235 36 57 chr4 101515341 101515481 -54114639 + RNERVK23-int LTR ERVK 6195 6331 -1886 2 1359 575 365 34 38 chr4 101516309 101516434 -54113686 + RLTR6-int LTR ERV1 4357 4478 -585 2 1359 4120 25 42 0 chr4 101516434 101516907 -54113213 - MT2_Mm LTR ERVL 0 493 1 2 1359 810 288 46 37 chr4 101516907 101517313 -54112807 + RLTR6-int LTR ERV1 7279 7666 -112 2 1359 1154 309 24 14 chr4 101516980 101517394 -54112726 + RNERVK23-int LTR ERVK 7411 7828 -389 2 1359 4333 174 22 3 chr4 101517428 101518119 -54112001 + ETnERV2-int LTR ERVK 6499 7202 -204 2 1359 1726 126 0 10 chr4 101518502 101518791 -54111329 + ORR1A2-int LTR MaLR 1678 1963 0 3 1359 1604 156 7 0 chr4 101518791 101519066 -54111054 + ORR1A2 LTR MaLR 1 277 -50 3 1359 6011 56 1 0 chr4 101519066 101519934 -54110186 - L1Md_F2 LINE L1 -558 6024 5156 3 1359 301 221 104 0 chr4 101519934 101520011 -54110109 + L1_Mur2 LINE L1 5193 5277 -600 3 1359 548 303 37 32 chr4 101519986 101520277 -54109843 - Lx9 LINE L1 -339 7305 6911 3 1359 951 231 29 29 chr4 101520304 101520580 -54109540 + RLTR22_Mur LTR ERVK 4 279 -1569 3 1359 693 144 16 0 chr4 101520580 101520705 -54109415 - Lx2 LINE L1 0 6997 6871 3 1359 2692 72 3 14 chr4 101520705 101521055 -54109065 - ORR1A1 LTR MaLR 0 346 1 3 1359 13947 57 12 3 chr4 101521055 101522831 -54107289 - ORR1A1-int LTR MaLR 0 1792 1 3 1359 467 108 40 2 chr4 101522831 101522914 -54107206 - ORR1A1 LTR MaLR -4 366 269 3 1359 1429 130 16 27 chr4 101522914 101523178 -54106942 - Lx2 LINE L1 -279 5905 5653 3 1359 372 43 0 0 chr4 101523987 101524033 -54106087 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1359 385 365 28 38 chr4 101524442 101524864 -54105256 + MuRRS4-int LTR ERV1 1299 1716 -3347 3 1359 2954 24 21 0 chr4 101525168 101525507 -54104613 - ORR1A0 LTR MaLR 0 346 1 4 1359 1944 79 0 11 chr4 101525717 101525987 -54104133 + MTB LTR MaLR 134 400 0 4 1359 1524 112 0 32 chr4 101525987 101526236 -54103884 - RMER2 LTR ERV1 -325 242 2 4 1359 1145 318 32 8 chr4 101526626 101527092 -54103028 - MuRRS4-int LTR ERV1 -1049 4014 3560 4 1359 203 61 30 0 chr4 101527168 101527201 -54102919 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1359 348 359 125 11 chr4 101527569 101527856 -54102264 - RLTR4_MM-int LTR ERV1 -3355 4246 3927 4 1359 26416 121 4 22 chr4 101527889 101531150 -54098970 + L1_Mus3 LINE L1 1783 4991 -892 4 1359 4454 45 11 7 chr4 101531150 101531692 -54098428 + L1Md_F2 LINE L1 6039 6582 0 4 1359 26416 117 14 18 chr4 101531692 101532602 -54097518 + L1_Mus3 LINE L1 4992 5875 -763 4 1359 1161 49 0 14 chr4 101532602 101532748 -54097372 + B1_Mus2 SINE Alu 2 145 -2 4 1359 6684 108 36 7 chr4 101532748 101533480 -54096640 + L1_Mus3 LINE L1 5876 6637 -1 4 1359 3166 113 63 38 chr4 101534180 101534731 -54095389 - RMER2 LTR ERV1 0 567 3 4 1359 253 169 32 117 chr4 101535017 101535034 -54095086 + MT2B2 LTR ERVL 150 158 -426 5 1359 405 241 82 18 chr4 101535034 101535144 -54094976 + B1_Mur4 SINE Alu 1 117 0 5 1359 1061 90 21 0 chr4 101535150 101535294 -54094826 + B1_Mus2 SINE Alu 1 147 0 5 1359 302 152 0 17 chr4 101535294 101535354 -54094766 + GA-rich Low_complexity Low_complexity 2 60 0 5 1359 5535 57 65 0 chr4 101535761 101536458 -54093662 - RLTR4_Mm LTR ERV1 0 742 1 5 1359 68920 12 2 0 chr4 101536458 101544046 -54086074 - RLTR4_MM-int LTR ERV1 0 7601 1 5 1359 5550 56 65 0 chr4 101544046 101544743 -54085377 - RLTR4_Mm LTR ERV1 0 742 1 5 1359 570 29 0 0 chr4 101544960 101545028 -54085092 + (TCC)n Simple_repeat Simple_repeat 3 70 0 5 1359 552 30 0 0 chr4 101545031 101545097 -54085023 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1359 244 219 89 8 chr4 101545116 101545194 -54084926 - PB1D10 SINE Alu -31 89 4 5 1359 234 302 56 79 chr4 101545497 101545623 -54084497 + RSINE1 SINE B4 43 165 0 5 1359 427 306 29 88 chr4 101545643 101545847 -54084273 + B3A SINE B2 3 194 -4 5 1359 779 268 10 0 chr4 101545977 101546182 -54083938 + B3 SINE B2 5 211 -5 6 1359 496 170 27 246 chr4 101546346 101546433 -54083687 + B1_Mur4 SINE Alu 5 81 -69 6 1359 1147 58 0 0 chr4 101546433 101546571 -54083549 + B1_Mus2 SINE Alu 5 142 -5 6 1359 496 170 27 246 chr4 101546571 101546670 -54083450 + B1_Mur4 SINE Alu 82 150 0 6 1359 261 0 0 0 chr4 101546742 101546771 -54083349 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1359 232 333 58 25 chr4 101546892 101547012 -54083108 + ID_B1 SINE B4 19 142 -82 6 1359 345 167 0 0 chr4 101547520 101547598 -54082522 + (TCTG)n Simple_repeat Simple_repeat 2 79 0 6 1359 1299 209 40 62 chr4 101548965 101549439 -54080681 - BGLII_B LTR ERVK -48 505 49 6 1359 468 0 0 0 chr4 101549481 101549533 -54080587 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 6 1359 366 109 0 0 chr4 101549575 101549630 -54080490 - B2_Mm2 SINE B2 -94 101 47 6 1359 1190 77 12 0 chr4 101549665 101549834 -54080286 - B2_Mm1t SINE B2 -22 171 1 6 1359 369 0 0 0 chr4 101550301 101550342 -54079778 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1359 582 228 0 0 chr4 101550344 101550467 -54079653 - B1_Mus2 SINE Alu -13 134 12 7 1359 396 0 0 0 chr4 101550915 101550959 -54079161 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1359 404 329 43 12 chr4 101551007 101551170 -54078950 - B3 SINE B2 -9 207 40 7 1359 236 311 19 0 chr4 101551214 101551317 -54078803 - ID_B1 SINE B4 0 224 120 7 1359 1258 98 117 0 chr4 101551327 101551577 -54078543 + L1_Mur1 LINE L1 1172 1442 -4444 7 1359 992 118 39 11 chr4 101551578 101551739 -54078381 + L1_Mus3 LINE L1 6454 6615 -23 7 1359 1162 55 0 40 chr4 101551739 101551891 -54078229 + B1_Mus1 SINE Alu 3 148 0 7 1359 992 118 39 11 chr4 101551891 101551949 -54078171 + L1_Mus3 LINE L1 6616 6638 0 7 1359 5317 126 52 4 chr4 101552002 101552926 -54077194 + L1_Mur1 LINE L1 1397 2364 -3522 7 1359 1190 62 0 0 chr4 101554589 101554735 -54075385 + B1_Mus1 SINE Alu 1 146 -2 7 1359 1028 187 48 162 chr4 101556258 101556616 -54073504 + RLTR41 LTR ERV1 63 379 -67 7 1359 1093 92 0 7 chr4 101557707 101557843 -54072277 + B1_Mus1 SINE Alu 2 137 -11 8 1359 207 0 0 0 chr4 101557843 101557866 -54072254 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1359 204 179 0 0 chr4 101560245 101560284 -54069836 + T-rich Low_complexity Low_complexity 1 39 0 8 1359 1192 68 0 0 chr4 101560284 101560431 -54069689 - B1_Mm SINE Alu 0 147 1 8 1359 2989 148 22 19 chr4 101560842 101561380 -54068740 - RLTR1D LTR ERV1 -16 589 50 8 1359 2026 162 94 17 chr4 101561791 101562204 -54067916 - BGLII_A LTR ERVK 0 445 1 8 1359 690 229 14 0 chr4 101562359 101562499 -54067621 + B1_Mur2 SINE Alu 1 142 -7 8 1359 279 229 163 126 chr4 101562742 101562877 -54067243 + B3A SINE B2 1 140 -58 8 1359 429 303 14 14 chr4 101564380 101564524 -54065596 - B1_Mur1 SINE Alu 0 149 6 8 1359 318 324 28 50 chr4 101564882 101565061 -54065059 + ID_B1 SINE B4 49 223 -1 8 1359 395 256 172 22 chr4 101565089 101565269 -54064851 + B3 SINE B2 2 208 -8 9 1359 602 148 85 25 chr4 101565293 101565411 -54064709 + B2_Mm2 SINE B2 2 126 -69 9 1359 248 110 419 47 chr4 101565545 101565631 -54064489 + B2_Mm2 SINE B2 67 186 -9 9 1359 521 115 0 10 chr4 101565682 101565779 -54064341 + (GA)n Simple_repeat Simple_repeat 1 96 0 9 1359 315 65 0 0 chr4 101566016 101566062 -54064058 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1359 1059 28 0 7 chr4 101566062 101566205 -54063915 - B1_Mm SINE Alu 0 147 6 9 1359 465 292 14 0 chr4 101566785 101566932 -54063188 + B1F2 SINE Alu 1 149 0 9 1359 319 247 21 86 chr4 101566964 101567057 -54063063 + B1_Mur3 SINE Alu 1 87 -62 9 1359 1386 197 7 109 chr4 101567057 101567137 -54062983 - RLTR22_Mur LTR ERVK -83 1765 1700 9 1359 1105 76 0 7 chr4 101567137 101567274 -54062846 + B1_Mm SINE Alu 3 139 -8 9 1359 279 0 0 0 chr4 101567274 101567305 -54062815 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1359 1386 197 7 109 chr4 101567313 101567637 -54062483 - RLTR22_Mur LTR ERVK -149 1699 1402 9 1359 270 0 0 0 chr4 101569502 101569532 -54060588 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1359 861 208 18 26 chr4 101569763 101569990 -54060130 - RLTR22_Mur LTR ERVK -465 1383 1159 9 1359 324 120 0 0 chr4 101570323 101570373 -54059747 + (GGA)n Simple_repeat Simple_repeat 3 52 0 1 1359 1044 111 14 0 chr4 101570383 101570527 -54059593 + B1_Mm SINE Alu 1 146 -1 1 1359 272 207 0 0 chr4 101570635 101570693 -54059427 + Lx5 LINE L1 6694 6751 -709 1 1359 813 119 0 8 chr4 101570723 101570850 -54059270 - BGLII LTR ERVK 0 421 296 1 1359 644 57 0 0 chr4 101570847 101570935 -54059185 - BGLII LTR ERVK -333 88 1 1 1359 3379 198 94 23 chr4 101570935 101570997 -54059123 - MYSERV16_I-int LTR ERVK 0 2326 2255 1 1359 2781 53 6 3 chr4 101570997 101571340 -54058780 + ORR1A1 LTR MaLR 1 344 -2 1 1359 14081 54 8 6 chr4 101571342 101573130 -54056990 + ORR1A1-int LTR MaLR 1 1792 0 1 1359 2874 52 3 0 chr4 101573130 101573475 -54056645 + ORR1A1 LTR MaLR 1 346 0 1 1359 3379 198 94 23 chr4 101573475 101573585 -54056535 - MYSERV16_I-int LTR ERVK -72 2254 2150 1 1359 1287 92 22 0 chr4 101573585 101573769 -54056351 + B2_Mm1t SINE B2 3 190 -3 1 1359 3379 198 94 23 chr4 101573769 101574553 -54055567 - MYSERV16_I-int LTR ERVK -177 2149 1301 1 1359 2491 168 103 82 chr4 101574543 101575211 -54054909 - RMER3D-int LTR ERVK -1146 1696 1015 1 1359 1070 205 112 28 chr4 101575227 101575459 -54054661 - RMER3D-int LTR ERVK -2005 837 595 1 1359 825 102 0 179 chr4 101575459 101575638 -54054482 + B1_Mm SINE Alu 1 147 0 1 1359 1070 205 112 28 chr4 101575638 101575726 -54054394 - RMER3D-int LTR ERVK -2248 594 491 1 1359 2975 70 52 7 chr4 101576076 101576479 -54053641 - BGLII LTR ERVK 0 421 1 1 1359 1114 314 69 42 chr4 101576479 101577079 -54053041 + Lx5 LINE L1 6457 7050 0 1 1359 946 76 0 0 chr4 101577107 101577238 -54052882 + B1_Mm SINE Alu 17 147 0 1 1359 231 114 0 0 chr4 101577238 101577273 -54052847 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1359 325 303 41 60 chr4 101577273 101577564 -54052556 + Lx9 LINE L1 7206 7470 -3 1 1359 450 201 38 31 chr4 101577578 101577737 -54052383 - RMER17B LTR ERVK -499 459 300 1 1359 646 178 7 43 chr4 101577864 101578005 -54052115 - B1_Mur4 SINE Alu -1 149 14 1 1359 230 183 25 112 chr4 101577934 101578014 -54052106 - MT2B LTR ERVL -362 239 167 1 1359 476 248 0 28 chr4 101578109 101578217 -54051903 + B1_Mur3 SINE Alu 1 105 -44 1 1359 250 274 16 0 chr4 101578214 101578276 -54051844 - RSINE1 SINE B4 -87 78 16 1 1359 378 296 0 20 chr4 101578383 101578483 -54051637 - PB1D9 SINE Alu -10 110 13 1 1359 355 250 278 0 chr4 101578549 101578657 -54051463 - B1_Mur2 SINE Alu -11 138 1 1 1359 370 219 86 4 chr4 101578659 101578758 -54051362 - B1_Mur4 SINE Alu -13 107 3 1 1359 2840 68 0 0 chr4 101579033 101579384 -54050736 - L1_Mus1 LINE L1 -1 6566 6216 1 1359 1040 109 0 0 chr4 101579384 101579522 -54050598 + B1_Mm SINE Alu 1 138 -9 1 1359 297 0 0 0 chr4 101579522 101579555 -54050565 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1359 180 0 0 0 chr4 101580767 101580787 -54049333 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1360 195 42 0 0 chr4 101584647 101584671 -54045449 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1 1360 414 0 0 0 chr4 101584924 101584970 -54045150 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1360 377 338 59 44 chr4 101585090 101585294 -54044826 + B3 SINE B2 1 207 -9 1 1360 226 308 67 25 chr4 101585681 101585720 -54044400 + B1F SINE Alu 25 144 0 1 1360 262 263 13 0 chr4 101585720 101585796 -54044324 + ID_B1 SINE B4 146 222 -2 1 1360 1547 48 0 21 chr4 101585885 101586076 -54044044 + B2_Mm1a SINE B2 2 188 -5 1 1360 220 292 0 0 chr4 101586171 101586219 -54043901 - B1F SINE Alu -82 67 20 1 1360 289 301 21 0 chr4 101586265 101586358 -54043762 - B1F2 SINE Alu -26 123 29 1 1360 832 204 81 81 chr4 101586779 101586899 -54043221 - RLTR22_Mur LTR ERVK -5 1843 1718 1 1360 719 167 16 16 chr4 101586899 101587027 -54043093 - B1_Mus2 SINE Alu -17 130 3 1 1360 832 204 81 81 chr4 101587027 101587178 -54042942 - RLTR22_Mur LTR ERVK -131 1717 1572 1 1360 1857 208 60 53 chr4 101587200 101587652 -54042468 + L1VL1 LINE L1 188 642 -5780 1 1360 23961 136 7 9 chr4 101587648 101589892 -54040228 + L1_Mus3 LINE L1 1997 4248 -1635 1 1360 2138 173 10 26 chr4 101589892 101590308 -54039812 + RLTR9E LTR ERVK 1 409 0 1 1360 23961 136 7 9 chr4 101590308 101590424 -54039696 + L1_Mus3 LINE L1 4249 4346 -1537 1 1360 1543 57 16 0 chr4 101590424 101590616 -54039504 + B2_Mm2 SINE B2 1 195 0 1 1360 23961 119 25 8 chr4 101590616 101592838 -54037282 + L1_Mus3 LINE L1 4347 6606 -32 1 1360 2220 206 30 117 chr4 101592838 101593537 -54036583 - RLTR22_Mus LTR ERVK -244 1564 918 1 1360 926 163 0 0 chr4 101593537 101593678 -54036442 - B1_Mus1 SINE Alu -7 141 1 1 1360 2220 206 30 117 chr4 101593678 101593733 -54036387 - RLTR22_Mus LTR ERVK -891 917 875 1 1360 417 173 8 133 chr4 101593756 101593876 -54036244 + B1_Mur4 SINE Alu 46 150 0 1 1360 825 114 8 0 chr4 101594067 101594198 -54035922 + B2_Mm1a SINE B2 2 133 -60 1 1360 40587 28 4 6 chr4 101594226 101600612 -54029508 - L1Md_T LINE L1 0 6582 214 1 1360 255 143 0 0 chr4 101600613 101600659 -54029461 + B2_Mm1a SINE B2 119 164 -29 1 1360 261 0 0 0 chr4 101600659 101600688 -54029432 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1360 698 101 9 0 chr4 101601823 101601932 -54028188 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 1 1360 369 273 14 41 chr4 101602133 101602278 -54027842 - ID_B1 SINE B4 -2 222 82 1 1360 297 348 52 9 chr4 101602371 101602487 -54027633 + RSINE1 SINE B4 6 126 -39 1 1360 299 199 31 106 chr4 101602594 101602730 -54027390 - B1F1 SINE Alu -17 132 14 1 1360 402 281 42 35 chr4 101603165 101603309 -54026811 - B1F2 SINE Alu 0 149 5 1 1360 714 136 0 0 chr4 101603371 101603489 -54026631 + (TTC)n Simple_repeat Simple_repeat 1 118 0 1 1360 231 283 0 0 chr4 101603482 101603581 -54026539 + CT-rich Low_complexity Low_complexity 3 101 0 1 1360 281 346 60 0 chr4 101603710 101603843 -54026277 - B3A SINE B2 -18 180 40 1 1360 409 287 32 42 chr4 101603883 101604072 -54026048 - ID_B1 SINE B4 0 224 38 1 1360 1062 103 7 0 chr4 101604109 101604255 -54025865 + B1_Mm SINE Alu 1 147 0 1 1360 333 0 0 0 chr4 101604255 101604292 -54025828 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1360 427 198 12 0 chr4 101604693 101604779 -54025341 + B2_Mm1t SINE B2 43 129 -64 1 1360 205 195 0 0 chr4 101604809 101604850 -54025270 + T-rich Low_complexity Low_complexity 1 41 0 1 1360 387 263 61 0 chr4 101605072 101605186 -54024934 - B1_Mus2 SINE Alu -1 146 26 1 1360 224 289 122 9 chr4 101605470 101605585 -54024535 - B1F SINE Alu -1 148 21 1 1360 362 316 22 15 chr4 101605494 101605629 -54024491 - ID_B1 SINE B4 -29 195 60 1 1360 2823 55 9 0 chr4 101605631 101605974 -54024146 - ORR1A0 LTR MaLR 0 346 1 1 1360 14243 56 2 2 chr4 101605974 101607767 -54022353 - ORR1A0-int LTR MaLR 0 1792 1 1 1360 2990 35 0 9 chr4 101607767 101608116 -54022004 - ORR1A0 LTR MaLR 0 346 1 1 1360 970 203 64 49 chr4 101608270 101608534 -54021586 - RLTR14-int LTR ERV1 -134 5183 4916 1 1360 482 244 23 166 chr4 101608554 101608819 -54021301 + RLTR14-int LTR ERV1 5091 5317 0 1 1360 1305 214 59 32 chr4 101608819 101609191 -54020929 + RLTR14 LTR ERV1 1 382 0 1 1360 598 208 62 0 chr4 101609225 101609355 -54020765 + B1_Mur3 SINE Alu 1 138 -11 1 1360 306 294 51 14 chr4 101609575 101609713 -54020407 + ID_B1 SINE B4 51 193 -31 1 1360 885 83 0 0 chr4 101609830 101609951 -54020169 - B1_Mus1 SINE Alu -27 121 1 1 1360 232 305 99 0 chr4 101610132 101610263 -54019857 + B1_Mur3 SINE Alu 6 149 0 1 1360 289 242 30 59 chr4 101610403 101610504 -54019616 + ID_B1 SINE B4 127 224 0 1 1360 1131 89 0 0 chr4 101610678 101610824 -54019296 + B1_Mm SINE Alu 2 147 0 1 1360 180 0 0 0 chr4 101612053 101612073 -54018047 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1360 479 17 17 0 chr4 101616195 101616255 -54013865 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1360 380 335 64 43 chr4 101616371 101616558 -54013562 + B3 SINE B2 1 191 -25 1 1360 221 316 67 25 chr4 101616962 101617001 -54013119 + B1F SINE Alu 25 144 0 1 1360 283 250 13 0 chr4 101617001 101617077 -54013043 + ID_B1 SINE B4 146 222 -2 1 1360 216 0 0 0 chr4 101617173 101617197 -54012923 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1360 220 292 0 0 chr4 101617221 101617269 -54012851 - B1F SINE Alu -82 67 20 1 1360 253 303 40 0 chr4 101617318 101617417 -54012703 - B1F2 SINE Alu -26 123 21 1 1360 276 200 192 39 chr4 101617830 101617934 -54012186 - RLTR22_Mur LTR ERVK -5 1843 1724 1 1360 714 136 0 17 chr4 101617950 101618070 -54012050 - B1_Mus2 SINE Alu -17 130 13 1 1360 646 222 18 21 chr4 101618082 101618267 -54011853 - RLTR22_Mur LTR ERVK -131 1717 1572 1 1360 1983 218 28 9 chr4 101618283 101618718 -54011402 + L1VL2 LINE L1 96 538 -5797 1 1360 23511 140 8 6 chr4 101618714 101618769 -54011351 + L1_Mus3 LINE L1 1997 2051 -3832 1 1360 3004 29 9 0 chr4 101618769 101619112 -54011008 - ORR1A0 LTR MaLR 0 346 1 1 1360 14352 54 1 4 chr4 101619112 101620909 -54009211 - ORR1A0-int LTR MaLR 0 1792 1 1 1360 3004 29 9 0 chr4 101620909 101621252 -54008868 - ORR1A0 LTR MaLR 0 346 1 1 1360 23511 140 8 6 chr4 101621252 101623444 -54006676 + L1_Mus3 LINE L1 2052 4247 -1636 1 1360 2014 155 53 28 chr4 101623444 101623843 -54006277 + RLTR9E LTR ERVK 1 409 0 1 1360 23511 122 29 3 chr4 101623843 101626159 -54003961 + L1_Mus3 LINE L1 4248 6626 -12 1 1360 2892 180 48 35 chr4 101626166 101626776 -54003344 - RLTR22_Mur LTR ERVK -263 1585 975 1 1360 882 36 0 0 chr4 101626784 101626894 -54003226 + (TCC)n Simple_repeat Simple_repeat 3 112 0 1 1360 1028 136 0 13 chr4 101626894 101627034 -54003086 - B1_Mus1 SINE Alu -8 140 1 1 1360 2892 180 48 35 chr4 101627034 101627114 -54003006 - RLTR22_Mur LTR ERVK -874 974 887 1 1360 524 182 20 0 chr4 101627112 101627211 -54002909 + B1_Mur4 SINE Alu 46 146 -4 1 1360 1265 87 6 6 chr4 101627400 101627574 -54002546 + B2_Mm1a SINE B2 2 175 -18 1 1360 960 148 0 0 chr4 101628718 101628887 -54001233 + (GGAA)n Simple_repeat Simple_repeat 3 171 0 1 1360 380 273 14 41 chr4 101629112 101629257 -54000863 - ID_B1 SINE B4 -2 222 82 1 1360 298 313 52 9 chr4 101629350 101629466 -54000654 + RSINE1 SINE B4 6 126 -39 1 1360 248 223 46 97 chr4 101629565 101629709 -54000411 - B1_Mur1 SINE Alu -5 144 14 1 1360 256 336 99 16 chr4 101630188 101630309 -53999811 - B4 SINE B4 -94 198 68 1 1360 405 165 15 52 chr4 101630341 101630475 -53999645 + CT-rich Low_complexity Low_complexity 4 132 0 1 1360 272 346 60 0 chr4 101630577 101630710 -53999410 - B3A SINE B2 -18 180 40 1 1360 403 293 32 42 chr4 101630750 101630939 -53999181 - ID_B1 SINE B4 0 224 38 1 1360 974 123 7 27 chr4 101630976 101631126 -53998994 + B1_Mm SINE Alu 1 147 0 1 1360 450 0 0 0 chr4 101631126 101631176 -53998944 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1360 420 209 12 0 chr4 101631577 101631663 -53998457 + B2_Mm1t SINE B2 43 129 -64 2 1360 387 263 61 0 chr4 101631956 101632070 -53998050 - B1_Mus2 SINE Alu -1 146 26 2 1360 344 308 22 15 chr4 101632376 101632511 -53997609 - ID_B1 SINE B4 -29 195 60 2 1360 1026 201 29 51 chr4 101632662 101632935 -53997185 - RLTR14-int LTR ERV1 -134 5183 4917 2 1360 533 221 46 149 chr4 101632937 101633219 -53996901 + RLTR14-int LTR ERV1 5065 5317 0 2 1360 1369 208 59 32 chr4 101633219 101633591 -53996529 + RLTR14 LTR ERV1 1 382 0 2 1360 645 202 47 0 chr4 101633625 101633754 -53996366 + B1_Mus2 SINE Alu 1 135 -12 2 1360 330 259 58 22 chr4 101633975 101634113 -53996007 + ID_B1 SINE B4 51 193 -31 2 1360 881 74 0 0 chr4 101634231 101634352 -53995768 - B1_Mus1 SINE Alu -27 121 1 2 1360 216 318 75 0 chr4 101634533 101634544 -53995576 + B1_Mus2 SINE Alu 6 44 -103 2 1360 235 289 0 26 chr4 101634544 101634622 -53995498 + MT2B LTR ERVL 182 257 -344 2 1360 216 318 75 0 chr4 101634622 101634640 -53995480 + B1_Mus2 SINE Alu 45 120 -27 2 1360 289 242 30 59 chr4 101634802 101634903 -53995217 + ID_B1 SINE B4 127 224 0 2 1360 227 271 156 0 chr4 101635021 101635117 -53995003 - PB1D9 SINE Alu -1 119 9 2 1360 1114 75 7 0 chr4 101635185 101635331 -53994789 - B1_Mus1 SINE Alu 0 148 2 2 1360 1113 234 36 10 chr4 101635590 101635897 -53994223 - MTC LTR MaLR 0 421 107 2 1360 5619 63 1 1 chr4 101635897 101636594 -53993526 + L1_Mm LINE L1 4890 5586 -297 2 1360 8466 38 1 2 chr4 101636594 101637591 -53992529 + L1Md_F2 LINE L1 5587 6582 0 2 1360 401 192 50 10 chr4 101637604 101637704 -53992416 - MTC LTR MaLR -290 106 3 2 1360 1491 53 10 45 chr4 101637705 101637904 -53992216 + B2_Mm1t SINE B2 1 192 -1 2 1360 1270 95 17 11 chr4 101637938 101638119 -53992001 - B2_Mm2 SINE B2 -13 182 1 2 1360 632 281 39 10 chr4 101638257 101638465 -53991655 + ID_B1 SINE B4 6 219 -5 2 1360 494 273 41 27 chr4 101638573 101638720 -53991400 + B1_Mur2 SINE Alu 1 149 0 2 1360 396 98 16 0 chr4 101638886 101638947 -53991173 + L1_Mm LINE L1 5689 5750 -133 2 1360 4031 125 23 2 chr4 101638948 101639555 -53990565 + Lx2 LINE L1 6378 6997 0 2 1360 1086 95 0 39 chr4 101639571 101639724 -53990396 + B1_Mus2 SINE Alu 1 147 0 2 1360 297 0 0 0 chr4 101639734 101639767 -53990353 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1360 1162 135 11 0 chr4 101640890 101641068 -53989052 + B2_Mm1t SINE B2 1 180 -13 2 1360 342 114 313 17 chr4 101641133 101641248 -53988872 + B2_Mm2 SINE B2 47 195 0 2 1360 1117 56 28 0 chr4 101641498 101641640 -53988480 - B1_Mus1 SINE Alu -2 146 1 2 1360 403 275 41 48 chr4 101642111 101642256 -53987864 - B1_Mur2 SINE Alu 0 149 6 2 1360 1285 93 11 5 chr4 101642989 101643173 -53986947 + B2_Mm2 SINE B2 3 187 -8 2 1360 351 269 56 21 chr4 101643218 101643362 -53986758 + B3 SINE B2 59 207 -9 2 1360 237 309 42 28 chr4 101643423 101643566 -53986554 + B1_Mur1 SINE Alu 5 149 0 2 1360 221 253 11 92 chr4 101644026 101644113 -53986007 + PB1D10 SINE Alu 30 109 -8 2 1360 243 0 0 0 chr4 101644342 101644369 -53985751 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1360 344 295 0 10 chr4 101644371 101644467 -53985653 + B1_Mur1 SINE Alu 55 149 0 2 1360 1116 75 0 20 chr4 101644470 101644620 -53985500 + B1_Mm SINE Alu 1 147 0 2 1360 513 228 28 49 chr4 101644674 101644817 -53985303 + B1_Mur2 SINE Alu 1 140 -9 2 1360 273 167 33 0 chr4 101644897 101644957 -53985163 - B1_Mm SINE Alu 0 147 86 2 1360 467 234 78 8 chr4 101644978 101645099 -53985021 - B1_Mur1 SINE Alu -6 143 13 2 1360 1046 97 14 0 chr4 101645099 101645243 -53984877 + B1_Mus2 SINE Alu 1 146 -1 2 1360 285 29 0 0 chr4 101645273 101645307 -53984813 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 2 1360 1007 150 64 54 chr4 101645361 101645424 -53984696 + L1_Rod LINE L1 3898 3971 -1876 2 1360 1131 78 101 12 chr4 101645424 101645592 -53984528 + B2_Mm2 SINE B2 5 187 -8 2 1360 1007 150 64 54 chr4 101645592 101645732 -53984388 + L1_Rod LINE L1 3972 4103 -1744 2 1360 279 104 0 0 chr4 101646253 101646301 -53983819 + L1_Rod LINE L1 4099 4146 -1701 2 1360 1167 96 0 0 chr4 101646306 101646473 -53983647 + (GAA)n Simple_repeat Simple_repeat 3 169 0 2 1360 1168 89 0 0 chr4 101646483 101646629 -53983491 + B1_Mus2 SINE Alu 2 147 0 2 1360 4567 66 0 5 chr4 101646943 101647520 -53982600 - L1Md_F2 LINE L1 -13 6569 5996 2 1360 4507 16 0 0 chr4 101647520 101648013 -53982107 - MT2_Mm LTR ERVL 0 493 1 2 1360 321 0 0 0 chr4 101648013 101648051 -53982069 - MERVL-int LTR ERVL 0 5485 5448 2 1360 354 167 46 35 chr4 101648051 101648138 -53981982 - ORR1A3-int LTR MaLR -1323 640 553 2 1360 48415 15 6 0 chr4 101648138 101653464 -53976656 - MERVL-int LTR ERVL -125 5360 1 2 1360 4507 16 0 0 chr4 101653464 101653957 -53976163 - MT2_Mm LTR ERVL 0 493 1 2 1360 8554 36 6 1 chr4 101653957 101655102 -53975018 - L1Md_F2 LINE L1 -582 6000 4847 2 1360 395 240 11 1 chr4 101655088 101655193 -53974927 - L1_Mur3 LINE L1 -2342 3804 3678 2 1360 1641 292 58 89 chr4 101655338 101656240 -53973880 + Lx9 LINE L1 6449 7322 -322 2 1360 394 157 0 63 chr4 101656238 101656333 -53973787 - L1_Mur3 LINE L1 -834 5046 4958 2 1360 1563 264 50 67 chr4 101656373 101657046 -53973074 + Lx5 LINE L1 6455 7050 0 2 1360 241 311 16 121 chr4 101657134 101657324 -53972796 + Lx8 LINE L1 7205 7374 -99 2 1360 417 81 0 0 chr4 101657324 101657386 -53972734 + B1_Mus1 SINE Alu 2 63 -85 2 1360 650 213 102 11 chr4 101657365 101657541 -53972579 + RLTR17 LTR ERVK 484 675 -17 2 1360 1182 41 0 13 chr4 101657555 101657704 -53972416 - B1_Mus1 SINE Alu 0 148 2 2 1360 1892 142 90 180 chr4 101657971 101658617 -53971503 + RLTR22_Mus LTR ERVK 1 588 -1220 2 1360 853 79 63 0 chr4 101658621 101658747 -53971373 + B1_Mm SINE Alu 14 147 0 2 1360 216 151 19 19 chr4 101658751 101658805 -53971315 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1360 343 189 0 26 chr4 101658882 101658958 -53971162 + MERVL_2A-int LTR ERVL 5412 5485 -276 2 1360 350 140 35 0 chr4 101658986 101659043 -53971077 + MERVL_2A-int LTR ERVL 5571 5629 -132 2 1360 287 153 26 53 chr4 101659043 101659119 -53971001 + ORR1A3-int LTR MaLR 567 640 -1323 2 1360 295 26 0 0 chr4 101659119 101659157 -53970963 + MERVL-int LTR ERVL 5448 5485 0 2 1360 3900 47 8 4 chr4 101659157 101659630 -53970490 + MT2C_Mm LTR ERVL 1 475 0 2 1360 296 116 0 0 chr4 101659632 101659675 -53970445 - Lx LINE L1 -331 6323 6281 2 1360 231 167 0 0 chr4 101659678 101659720 -53970400 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1360 2327 124 148 20 chr4 101659817 101659831 -53970289 - Lx LINE L1 0 6654 6642 2 1360 1161 69 7 0 chr4 101659831 101659976 -53970144 - B1_Mus2 SINE Alu 0 147 2 2 1360 240 35 0 0 chr4 101659976 101660005 -53970115 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1360 2327 134 152 19 chr4 101660005 101660478 -53969642 - Lx LINE L1 -269 6789 6137 2 1360 237 180 0 153 chr4 101663182 101663254 -53966866 - MTB_Mm LTR MaLR -166 241 181 2 1360 404 267 61 25 chr4 101663292 101663488 -53966632 - Lx6 LINE L1 0 7460 7258 2 1360 529 192 15 46 chr4 101663519 101663650 -53966470 + L1_Mur3 LINE L1 3876 4002 -1878 2 1360 3870 102 25 4 chr4 101663832 101664393 -53965727 - L1_Mus3 LINE L1 -9 6629 6057 2 1360 971 218 187 4 chr4 101665193 101665356 -53964764 - MTD LTR MaLR 0 421 185 2 1360 2552 123 20 131 chr4 101665356 101665898 -53964222 - RLTR45 LTR ERVK 0 482 1 2 1360 971 214 84 0 chr4 101665898 101666055 -53964065 - MTD LTR MaLR -231 188 27 2 1360 539 15 0 14 chr4 101666055 101666124 -53963996 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 2 1360 244 202 0 37 chr4 101666598 101666680 -53963440 + CT-rich Low_complexity Low_complexity 1 79 0 2 1360 1929 243 237 39 chr4 101666681 101667372 -53962748 - RMER1C Other Other -11 1331 496 2 1360 204 125 0 0 chr4 101667379 101667411 -53962709 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1360 1153 36 43 0 chr4 101667413 101667553 -53962567 - B1_Mm SINE Alu 0 147 2 2 1360 532 123 167 0 chr4 101667688 101667802 -53962318 - B1_Mus2 SINE Alu -1 146 14 2 1360 1108 96 0 0 chr4 101667802 101667948 -53962172 + B1_Mus2 SINE Alu 1 146 -1 2 1360 1332 91 43 0 chr4 101668203 101668389 -53961731 - B2_Mm2 SINE B2 0 195 2 2 1360 1116 29 0 55 chr4 101670299 101670445 -53959675 + B1_Mm SINE Alu 1 138 -9 2 1360 315 0 0 0 chr4 101670445 101670480 -53959640 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1360 276 250 29 0 chr4 101670579 101670647 -53959473 + RLTR18B LTR ERVK 1 70 -442 2 1360 571 264 91 45 chr4 101670674 101670872 -53959248 - MTD LTR MaLR -208 211 5 2 1360 272 298 169 6 chr4 101671081 101671253 -53958867 - Tigger5 DNA MER2_type -2177 229 30 2 1360 429 199 268 7 chr4 101671510 101671652 -53958468 + RLTR12A LTR ERVK 386 564 -4 2 1360 3436 188 90 28 chr4 101672202 101672519 -53957601 - RMER13A LTR ERVK 0 860 508 2 1360 567 0 0 0 chr4 101672519 101672582 -53957538 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1360 3436 188 90 28 chr4 101672582 101673074 -53957046 - RMER13A LTR ERVK -353 507 2 2 1360 779 206 156 22 chr4 101673615 101673839 -53956281 - ORR1D1 LTR MaLR -1 373 120 2 1360 253 93 18 18 chr4 101674127 101674182 -53955938 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 2 1360 229 246 33 0 chr4 101674440 101674501 -53955619 + ORR1C1 LTR MaLR 21 83 -295 2 1360 1239 56 0 0 chr4 101674585 101674745 -53955375 + B2_Mm1t SINE B2 1 160 -33 2 1360 252 0 0 0 chr4 101674745 101674773 -53955347 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2 1360 1057 139 0 32 chr4 101674773 101674798 -53955322 + B2_Mm2 SINE B2 159 180 -15 2 1360 553 295 16 21 chr4 101675220 101675407 -53954713 - MER58A DNA MER1_type -1 223 38 2 1360 307 299 45 58 chr4 101678334 101678490 -53951630 + ORSL-2b DNA Tip100 16 169 -339 2 1360 261 0 0 0 chr4 101678736 101678765 -53951355 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1360 2708 46 9 3 chr4 101679219 101679544 -53950576 - IAPLTR2b LTR ERVK 0 327 1 2 1360 413 66 0 16 chr4 101680346 101680408 -53949712 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1360 318 286 11 17 chr4 101680418 101680535 -53949585 - L1M2 LINE L1 -504 5793 5677 3 1360 28 0 0 0 chr4 101681157 101681185 -53948935 + AT_rich Low_complexity Low_complexity 1 28 0 3 1360 3893 286 75 45 chr4 101681328 101681805 -53948315 + Lx9 LINE L1 5658 6253 -1391 3 1360 322 74 0 36 chr4 101681805 101681861 -53948259 + (CAT)n Simple_repeat Simple_repeat 1 54 0 3 1360 925 142 43 0 chr4 101681861 101682002 -53948118 - B1_Mur4 SINE Alu -2 148 2 3 1360 3893 255 45 52 chr4 101682002 101682035 -53948085 + Lx9 LINE L1 6254 6280 -1364 3 1360 1243 138 0 5 chr4 101682035 101682225 -53947895 - B2_Mm2 SINE B2 -5 190 2 3 1360 3893 255 45 52 chr4 101682225 101683282 -53946838 + Lx9 LINE L1 6281 7358 -286 3 1360 840 274 51 34 chr4 101683601 101683896 -53946224 - Lx8 LINE L1 0 7473 7174 3 1360 305 264 68 11 chr4 101684219 101684307 -53945813 - PB1D7 SINE Alu -16 104 12 3 1360 277 152 43 21 chr4 101684429 101684523 -53945597 + (TATAA)n Simple_repeat Simple_repeat 3 98 0 3 1360 388 265 31 62 chr4 101684678 101684839 -53945281 - RMER10B LTR ERVL -46 352 197 3 1360 585 0 0 0 chr4 101685391 101685456 -53944664 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1360 279 288 0 12 chr4 101685533 101685614 -53944506 - B4 SINE B4 -209 83 4 3 1360 256 350 25 63 chr4 101685648 101685886 -53944234 - MIR SINE MIR -11 251 23 3 1360 207 182 0 0 chr4 101686718 101686751 -53943369 + (TATG)n Simple_repeat Simple_repeat 4 36 0 3 1360 25 0 0 0 chr4 101686805 101686830 -53943290 + AT_rich Low_complexity Low_complexity 1 25 0 3 1360 902 188 193 0 chr4 101686830 101687011 -53943109 - B3 SINE B2 0 216 1 3 1360 423 0 0 0 chr4 101687081 101687128 -53942992 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1360 1556 288 86 24 chr4 101687509 101688102 -53942018 + Lx8 LINE L1 6842 7471 -2 3 1360 590 288 78 37 chr4 101688746 101688937 -53941183 + B4A SINE B4 1 199 -93 3 1360 363 44 0 0 chr4 101688951 101688996 -53941124 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 3 1360 227 207 17 33 chr4 101689063 101689123 -53940997 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1360 1861 179 40 13 chr4 101689565 101689876 -53940244 - RMER4B LTR ERVK 0 585 231 3 1360 923 89 0 7 chr4 101689876 101690012 -53940108 + (TTTTG)n Simple_repeat Simple_repeat 2 136 0 3 1360 1165 30 0 0 chr4 101690014 101690148 -53939972 - B1_Mm SINE Alu -12 135 2 3 1360 1861 188 60 16 chr4 101690148 101690353 -53939767 - RMER4B LTR ERVK -355 230 17 3 1360 1351 90 27 0 chr4 101690966 101691154 -53938966 - B2_Mm1a SINE B2 0 193 1 3 1360 273 263 127 32 chr4 101691514 101691671 -53938449 + MIR SINE MIR 91 262 0 3 1360 243 0 0 0 chr4 101691786 101691813 -53938307 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3 1360 294 302 10 50 chr4 101691863 101691964 -53938156 + RSINE1 SINE B4 35 131 -34 3 1360 1793 115 66 41 chr4 101691987 101692305 -53937815 + ORR1A3 LTR MaLR 1 326 0 3 1360 668 314 5 5 chr4 101692452 101692644 -53937476 - B3 SINE B2 -11 205 14 3 1360 250 322 120 7 chr4 101692857 101693007 -53937113 + MIR SINE MIR 28 194 -68 3 1360 1162 58 0 0 chr4 101693009 101693146 -53936974 + B1_Mm SINE Alu 2 138 -9 3 1360 206 32 32 0 chr4 101693146 101693177 -53936943 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1360 591 257 196 27 chr4 101693328 101693477 -53936643 + B3 SINE B2 1 150 -66 3 1360 581 110 9 0 chr4 101693477 101693586 -53936534 + (CA)n Simple_repeat Simple_repeat 2 111 0 3 1360 591 257 196 27 chr4 101693586 101693620 -53936500 + B3 SINE B2 151 214 -2 3 1360 1181 50 0 0 chr4 101694800 101694939 -53935181 + B1_Mus1 SINE Alu 2 140 -8 3 1360 303 202 0 0 chr4 101695237 101695316 -53934804 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1360 498 331 80 18 chr4 101695317 101695591 -53934529 - B4A SINE B4 0 292 2 3 1360 194 125 21 0 chr4 101695733 101695781 -53934339 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 3 1360 363 44 0 0 chr4 101696986 101697031 -53933089 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1360 297 0 0 0 chr4 101697221 101697254 -53932866 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1360 216 0 0 0 chr4 101697254 101697277 -53932843 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1360 785 259 66 0 chr4 101697354 101697551 -53932569 - B3 SINE B2 -6 210 1 3 1360 251 220 155 29 chr4 101698072 101698175 -53931945 + B3A SINE B2 8 123 -75 3 1360 470 125 198 0 chr4 101698194 101698290 -53931830 + Lx2B LINE L1 6886 7000 0 3 1360 1083 191 28 14 chr4 101699017 101699229 -53930891 + B3 SINE B2 2 216 0 3 1360 360 0 0 0 chr4 101699444 101699484 -53930636 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1360 405 0 0 0 chr4 101699749 101699794 -53930326 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1360 288 0 0 0 chr4 101699794 101699825 -53930295 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1360 1167 82 0 0 chr4 101699827 101699974 -53930146 - B1_Mus2 SINE Alu 0 147 1 3 1360 180 0 0 0 chr4 101700208 101700228 -53929892 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1360 23 54 0 0 chr4 101700418 101700455 -53929665 + AT_rich Low_complexity Low_complexity 1 37 0 3 1360 267 346 83 57 chr4 101701103 101701317 -53928803 - Charlie2a DNA MER1_type -2500 361 153 3 1360 960 206 0 122 chr4 101701317 101701571 -53928549 - URR1B DNA MER1_type 0 225 3 3 1360 267 346 83 57 chr4 101701571 101701705 -53928415 - Charlie2a DNA MER1_type -2709 152 4 3 1360 959 185 116 5 chr4 101702031 101702221 -53927899 - B3 SINE B2 -5 211 1 3 1360 376 342 50 6 chr4 101702914 101703073 -53927047 + RMER15 LTR ERVL 371 536 -39 3 1360 243 152 0 0 chr4 101703462 101703508 -53926612 + T-rich Low_complexity Low_complexity 1 46 0 3 1360 881 169 7 21 chr4 101703634 101703779 -53926341 + B1_Mur4 SINE Alu 1 143 -7 3 1360 1253 267 31 34 chr4 101704022 101704379 -53925741 + ORR1D1 LTR MaLR 19 374 0 3 1360 1956 196 45 69 chr4 101704565 101705070 -53925050 + RLTR20A2 LTR ERVK 1 493 -85 3 1360 438 53 0 0 chr4 101706116 101706173 -53923947 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 3 1360 225 0 0 0 chr4 101706187 101706212 -53923908 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1360 1246 298 45 15 chr4 101706540 101707081 -53923039 + L1MA6 LINE L1 5353 5903 -397 3 1360 271 289 25 42 chr4 101707222 101707341 -53922779 + PB1D10 SINE Alu 1 117 0 3 1360 2393 51 0 0 chr4 101707501 101707795 -53922325 + L1Md_F2 LINE L1 6288 6581 -1 3 1360 267 313 0 20 chr4 101708065 101708166 -53921954 + GA-rich Low_complexity Low_complexity 3 101 0 3 1360 778 288 101 0 chr4 101709242 101709520 -53920600 + MER54A LTR ERVL 3 308 -593 3 1360 787 110 44 7 chr4 101709541 101709678 -53920442 + ORR1B1-int LTR MaLR 1819 1960 -3 3 1360 1874 140 86 17 chr4 101709678 101710009 -53920111 + ORR1B1 LTR MaLR 39 394 0 3 1360 1029 58 72 7 chr4 101710137 101710275 -53919845 + B1_Mus1 SINE Alu 2 148 0 3 1360 3329 30 8 8 chr4 101710281 101710677 -53919443 - MTA_Mm LTR MaLR 0 396 1 3 1360 9086 47 3 1 chr4 101710677 101711773 -53918347 - MTA_Mm-int LTR MaLR 0 1098 1 3 21 1381 33 11 5 chr4 101711773 101711958 -53918162 - MTA_Mm LTR MaLR 0 396 211 3 1361 316 287 0 11 chr4 101711992 101712080 -53918040 + B3A SINE B2 2 88 -110 3 1361 297 0 0 0 chr4 101712131 101712164 -53917956 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1361 266 0 0 29 chr4 101712716 101712751 -53917369 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 1361 30 89 0 0 chr4 101713785 101713864 -53916256 + AT_rich Low_complexity Low_complexity 1 79 0 3 1361 8786 31 3 0 chr4 101714593 101715774 -53914346 - L1Md_F3 LINE L1 0 6584 5400 3 1361 228 172 29 59 chr4 101716011 101716079 -53914041 - MLT1A1 LTR MaLR -19 389 324 3 1361 246 125 0 0 chr4 101716399 101716447 -53913673 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1361 1692 16 0 5 chr4 101716537 101716729 -53913391 - B2_Mm1a SINE B2 -1 192 2 3 1361 712 286 45 152 chr4 101717189 101717589 -53912531 + RMER19C LTR ERVK 243 599 -12 3 1361 204 105 17 50 chr4 101718888 101718948 -53911172 + T-rich Low_complexity Low_complexity 2 59 0 3 1361 249 197 55 96 chr4 101722506 101722518 -53907602 - ORR1B1 LTR MaLR -310 84 72 3 1361 3069 50 0 0 chr4 101722518 101722860 -53907260 - ORR1A1 LTR MaLR -4 342 1 3 1361 8430 47 32 1 chr4 101722860 101723949 -53906171 - ORR1A1-int LTR MaLR 0 1792 639 3 1361 1258 62 0 0 chr4 101724322 101724468 -53905652 + B1_Mus2 SINE Alu 2 147 0 3 1361 333 215 91 27 chr4 101725024 101725134 -53904986 + LTR41B LTR ERVL 585 701 -57 3 1361 332 268 0 0 chr4 101725139 101725221 -53904899 + Lx8 LINE L1 6980 7061 -412 3 1361 5278 120 14 18 chr4 101725416 101726155 -53903965 + RMER19A LTR ERVK 2 737 0 3 1361 820 265 71 29 chr4 101726215 101726495 -53903625 - B4A SINE B4 0 292 1 3 1361 1277 252 66 7 chr4 101726498 101726802 -53903318 + ORR1E LTR MaLR 34 355 -4 3 1361 2414 212 23 154 chr4 101726873 101727575 -53902545 + RMER19C LTR ERVK 1 610 -1 3 1361 794 188 20 14 chr4 101727767 101727807 -53902313 - B1_Mus2 SINE Alu 0 147 106 3 1361 212 59 29 0 chr4 101727807 101727841 -53902279 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1361 794 188 20 14 chr4 101727841 101727946 -53902174 - B1_Mus2 SINE Alu -42 105 1 3 1361 218 300 12 59 chr4 101728054 101728139 -53901981 - L2a LINE L2 0 3426 3346 3 1361 393 86 0 0 chr4 101729650 101729708 -53900412 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1361 23 0 0 0 chr4 101729802 101729825 -53900295 + AT_rich Low_complexity Low_complexity 1 23 0 3 1361 1621 43 27 0 chr4 101729833 101730019 -53900101 - B2_Mm1t SINE B2 -1 192 2 3 1361 230 239 0 0 chr4 101730030 101730097 -53900023 + T-rich Low_complexity Low_complexity 6 72 0 3 1361 1196 61 0 45 chr4 101730097 101730251 -53899869 - B1_Mm SINE Alu 0 147 1 3 1361 5992 86 63 0 chr4 101730284 101731388 -53898732 + L1VL2 LINE L1 69 1254 -2361 3 1361 1450 60 0 66 chr4 101731388 101731584 -53898536 + L1_Mus1 LINE L1 6385 6567 0 3 1361 22 35 0 0 chr4 101731600 101731629 -53898491 + AT_rich Low_complexity Low_complexity 1 29 0 3 1361 1314 71 100 0 chr4 101731629 101731839 -53898281 + L1VL2 LINE L1 2758 2988 -627 3 1361 3720 18 2 0 chr4 101732086 101732481 -53897639 + MTA_Mm LTR MaLR 1 396 0 4 1361 9498 41 6 1 chr4 101732481 101733574 -53896546 + MTA_Mm-int LTR MaLR 1 1098 0 4 1361 3720 18 2 0 chr4 101733574 101733969 -53896151 + MTA_Mm LTR MaLR 1 396 0 4 1361 399 191 168 26 chr4 101734406 101734519 -53895601 - MTD LTR MaLR -2 417 289 4 1361 731 263 18 0 chr4 101734500 101734671 -53895449 - MTD LTR MaLR -245 174 1 4 1361 27 0 0 0 chr4 101735507 101735534 -53894586 + AT_rich Low_complexity Low_complexity 1 27 0 4 1361 201 108 0 0 chr4 101735557 101735594 -53894526 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1361 22 0 0 0 chr4 101735653 101735675 -53894445 + AT_rich Low_complexity Low_complexity 1 22 0 4 1361 277 307 105 11 chr4 101736000 101736181 -53893939 + L1M4 LINE L1 2581 2778 -3368 4 1361 250 316 21 21 chr4 101736298 101736395 -53893725 + L1M4 LINE L1 2955 3051 -3095 4 1361 1035 229 22 62 chr4 101736512 101736833 -53893287 - RLTR15 LTR ERVK -51 308 1 4 1361 873 253 149 28 chr4 101736921 101737242 -53892878 + ORR1D2 LTR MaLR 1 360 -10 4 1361 1078 283 51 93 chr4 101737242 101737764 -53892356 + Lx7 LINE L1 6830 7342 -131 4 1361 405 0 0 0 chr4 101737764 101737809 -53892311 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1361 973 304 56 75 chr4 101737809 101737875 -53892245 + Lx7 LINE L1 7343 7418 -55 4 1361 262 125 0 51 chr4 101737875 101737934 -53892186 + GA-rich Low_complexity Low_complexity 5 60 0 4 1361 203 167 0 0 chr4 101738208 101738244 -53891876 + (TTG)n Simple_repeat Simple_repeat 2 37 0 4 1361 5920 68 11 2 chr4 101738249 101739041 -53891079 - MusHAL1 LINE L1 -151 2561 1763 4 1361 434 198 0 42 chr4 101739244 101739339 -53890781 + L1MA8 LINE L1 4912 5002 -1141 4 1361 1006 266 49 12 chr4 101739341 101739585 -53890535 + B4 SINE B4 3 255 -37 4 1361 504 125 0 0 chr4 101739595 101739691 -53890429 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1361 668 304 108 34 chr4 101739691 101740331 -53889789 + L1MA8 LINE L1 4961 5646 -645 4 1361 342 45 0 0 chr4 101740331 101740375 -53889745 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1361 668 234 80 49 chr4 101740375 101740540 -53889580 + L1MA8 LINE L1 5647 5851 -449 4 1361 203 0 37 0 chr4 101740610 101740637 -53889483 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1361 1100 189 112 15 chr4 101740679 101740948 -53889172 - ORR1D1 LTR MaLR -74 300 6 4 1361 485 237 99 48 chr4 101741287 101741622 -53888498 + L1M4 LINE L1 5154 5518 -660 4 1361 818 220 77 61 chr4 101741653 101741900 -53888220 + Lx6 LINE L1 7183 7433 -27 4 1361 447 125 0 0 chr4 101741968 101742040 -53888080 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1361 271 386 87 9 chr4 101742042 101742157 -53887963 - RSINE1 SINE B4 -41 124 1 4 1361 367 314 98 11 chr4 101742163 101742337 -53887783 + L1M4 LINE L1 5522 5710 -469 4 1361 22 0 0 0 chr4 101742338 101742360 -53887760 + AT_rich Low_complexity Low_complexity 1 22 0 4 1361 244 185 77 0 chr4 101742391 101742456 -53887664 + Lx6 LINE L1 7352 7421 -39 4 1361 640 344 61 3 chr4 101742466 101742857 -53887263 + L1MB7 LINE L1 5771 6184 0 4 1361 315 347 40 0 chr4 101743145 101743269 -53886851 + L2 LINE L2 1226 1354 -2065 4 1361 326 80 20 0 chr4 101743304 101743354 -53886766 + (CAGG)n Simple_repeat Simple_repeat 1 51 0 4 1361 570 214 0 0 chr4 101743649 101743752 -53886368 - B4 SINE B4 -75 217 115 4 1361 444 254 103 88 chr4 101743824 101744018 -53886102 + B3A SINE B2 2 198 0 4 1361 3161 53 5 0 chr4 101744124 101744499 -53885621 + L1_Mus1 LINE L1 6191 6567 0 4 1361 7502 127 26 6 chr4 101746662 101747773 -53882347 - Lx2B LINE L1 -5 6995 5863 4 1361 3154 150 23 0 chr4 101747773 101748285 -53881835 + Lx2B LINE L1 5363 5886 0 4 1361 296 315 45 30 chr4 101748927 101749195 -53880925 - L1M5 LINE L1 -1559 4587 4316 4 1361 369 43 0 0 chr4 101749239 101749286 -53880834 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1361 367 321 32 106 chr4 101749310 101749498 -53880622 - MLT2B1 LTR ERVL -2 554 381 4 1361 218 162 13 39 chr4 101749983 101750060 -53880060 + T-rich Low_complexity Low_complexity 1 75 0 4 1361 844 171 14 14 chr4 101750060 101750202 -53879918 - B1_Mur3 SINE Alu 0 149 8 4 1361 656 294 4 72 chr4 101750062 101750297 -53879823 - ID_B1 SINE B4 0 224 6 4 1361 1196 203 113 163 chr4 101750330 101750771 -53879349 + MTD LTR MaLR 1 419 0 4 1361 328 294 116 81 chr4 101751190 101751365 -53878755 - ORR1E LTR MaLR -189 181 1 4 1361 10400 115 77 0 chr4 101752040 101754536 -53875584 - L1_Mus1 LINE L1 0 6567 3841 4 1361 26 0 0 0 chr4 101755217 101755243 -53874877 + AT_rich Low_complexity Low_complexity 1 26 0 4 1361 2552 165 23 21 chr4 101755247 101755902 -53874218 - RLTR31_Mm LTR ERVK 0 561 1 4 1361 302 156 16 0 chr4 101756183 101756247 -53873873 + CT-rich Low_complexity Low_complexity 2 66 0 4 1361 847 100 85 20 chr4 101756536 101756689 -53873431 - Lx4B LINE L1 -969 6089 5927 4 1361 663 135 21 50 chr4 101756689 101756829 -53873291 + Lx4B LINE L1 6919 7054 -4 4 1361 339 25 0 0 chr4 101756890 101756930 -53873190 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1361 3319 289 58 39 chr4 101756930 101758147 -53871973 - Lx7 LINE L1 -391 7305 6065 4 1361 567 0 0 0 chr4 101758293 101758356 -53871764 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 4 1361 495 0 0 0 chr4 101759699 101759754 -53870366 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1361 381 371 68 39 chr4 101762728 101762933 -53867187 + LTR16A LTR ERVL 3 213 -238 4 1361 21 71 0 0 chr4 101763259 101763301 -53866819 + AT_rich Low_complexity Low_complexity 1 42 0 4 1361 228 331 12 65 chr4 101763321 101763489 -53866631 + YREP_Mm Unknown Unknown 136 294 -1518 4 1361 676 262 7 14 chr4 101763372 101763515 -53866605 - ID_B1 SINE B4 -5 219 78 4 1361 532 327 164 16 chr4 101765087 101765404 -53864716 - L1MDb LINE L1 -5478 931 568 4 1361 316 348 14 7 chr4 101765511 101765653 -53864467 - L1MDb LINE L1 -6224 185 43 4 1361 276 30 0 0 chr4 101766901 101766934 -53863186 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1361 405 0 0 0 chr4 101766934 101766978 -53863142 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1361 240 159 0 22 chr4 101768002 101768047 -53862073 + MLT1J LTR MaLR 109 152 -360 4 1361 318 341 53 27 chr4 101768152 101768339 -53861781 + MLT1J LTR MaLR 316 507 -5 4 1361 631 251 70 12 chr4 101769764 101769961 -53860159 - B3A SINE B2 0 216 2 4 1361 298 284 21 64 chr4 101770155 101770249 -53859871 - RSINE1 SINE B4 0 165 76 4 1361 344 340 42 11 chr4 101770317 101770412 -53859708 - B4 SINE B4 -170 122 25 4 1361 282 301 43 34 chr4 101770832 101770949 -53859171 - MLT1J1 LTR MaLR -127 317 200 4 1361 238 311 56 0 chr4 101770983 101771073 -53859047 - MLT1J1 LTR MaLR -325 119 25 4 1361 272 310 132 32 chr4 101771116 101771496 -53858624 - HAL1 LINE L1 -718 1789 1372 4 1361 551 336 152 40 chr4 101771787 101772332 -53857788 - Kanga1b DNA Tc2 -8 771 166 4 1361 1111 109 0 7 chr4 101774573 101774721 -53855399 - B1_Mm SINE Alu 0 147 1 4 1361 267 347 60 26 chr4 101775244 101775395 -53854725 - MIRb SINE MIR -11 257 102 4 1361 252 0 44 44 chr4 101775645 101775690 -53854430 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1361 26 0 0 0 chr4 101775717 101775743 -53854377 + AT_rich Low_complexity Low_complexity 1 26 0 4 1361 424 264 0 62 chr4 101775933 101776062 -53854058 - MER20 DNA MER1_type -98 121 1 4 1361 27 29 0 0 chr4 101776689 101776723 -53853397 + AT_rich Low_complexity Low_complexity 1 34 0 4 1361 627 47 28 19 chr4 101776749 101776857 -53853263 - L1Md_F3 LINE L1 -2 6582 6474 4 1361 324 0 0 0 chr4 101776898 101776934 -53853186 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1361 282 159 273 0 chr4 101778055 101778066 -53852054 - B4 SINE B4 -64 228 217 4 1361 387 0 0 0 chr4 101778066 101778109 -53852011 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1361 512 80 27 0 chr4 101778110 101778185 -53851935 - PB1D9 SINE Alu -12 108 32 4 1361 342 0 0 0 chr4 101778191 101778229 -53851891 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1361 673 76 18 79 chr4 101778230 101778344 -53851776 - PB1D9 SINE Alu -12 108 2 4 1361 275 63 47 16 chr4 101778344 101778408 -53851712 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 4 1361 241 333 81 27 chr4 101778611 101778722 -53851398 - ORR1E LTR MaLR -239 120 4 4 1361 517 235 35 9 chr4 101780844 101780960 -53849160 - B1F SINE Alu -8 141 23 4 1361 651 170 11 28 chr4 101781585 101781766 -53848354 + GA-rich Low_complexity Low_complexity 3 180 0 4 1361 180 184 0 0 chr4 101781755 101781804 -53848316 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 4 1361 297 238 19 19 chr4 101782133 101782236 -53847884 + L1M5 LINE L1 5653 5755 -369 4 1361 197 390 116 7 chr4 101783471 101783618 -53846502 + L2 LINE L2 2698 2860 -559 4 1361 234 0 0 0 chr4 101784355 101784381 -53845739 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1361 464 72 14 0 chr4 101785888 101785957 -53844163 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 4 1361 744 265 7 7 chr4 101785959 101786111 -53844009 - RSINE1 SINE B4 -10 155 4 4 1361 245 211 0 0 chr4 101786454 101786506 -53843614 - L1M5 LINE L1 -373 5867 5816 4 1361 525 16 0 0 chr4 101786565 101786627 -53843493 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1361 431 242 47 55 chr4 101786816 101786943 -53843177 + MLT1A1 LTR MaLR 2 127 -281 4 1361 401 301 40 0 chr4 101787160 101787333 -53842787 - L1MA4 LINE L1 -375 5925 5746 4 1361 279 0 0 0 chr4 101788020 101788051 -53842069 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1361 531 342 50 0 chr4 101788559 101788761 -53841359 - MER58C DNA MER1_type -2 213 2 4 1361 702 273 0 37 chr4 101789097 101789287 -53840833 + B3A SINE B2 1 183 -15 4 1361 378 0 0 0 chr4 101789454 101789496 -53840624 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1361 382 314 140 20 chr4 101789505 101789755 -53840365 + L1MC3 LINE L1 7211 7490 -295 4 1361 307 261 118 126 chr4 101789833 101789960 -53840160 + B1F SINE Alu 24 149 0 4 1361 336 295 100 50 chr4 101789962 101790162 -53839958 + L1MD LINE L1 3138 3347 -2799 4 1361 364 299 21 71 chr4 101790296 101790534 -53839586 + L1MD LINE L1 3539 3764 -2382 4 1361 1365 237 92 3 chr4 101791251 101791589 -53838531 + ORR1D2 LTR MaLR 1 368 -2 4 1361 252 339 61 108 chr4 101792064 101792276 -53837844 - Charlie15a DNA MER1_type -20 204 3 4 1361 608 306 116 38 chr4 101792559 101792929 -53837191 + MER63B DNA AcHobo 38 436 0 5 1361 207 323 77 0 chr4 101792934 101792999 -53837121 + L2a LINE L2 3288 3357 -69 5 1361 2787 62 0 17 chr4 101794796 101795157 -53834963 - L1_Mus1 LINE L1 0 6567 6213 5 1361 450 264 5 58 chr4 101795363 101795552 -53834568 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 5 1361 742 225 118 55 chr4 101796141 101796252 -53833868 - L1_Rod LINE L1 -512 5335 5215 5 1361 252 77 0 0 chr4 101796252 101796291 -53833829 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 5 1361 742 225 118 55 chr4 101796291 101796527 -53833593 - L1_Rod LINE L1 -633 5214 4966 5 1361 514 230 249 5 chr4 101796534 101796739 -53833381 + L1_Mur3 LINE L1 5336 5590 -290 5 1361 936 50 0 0 chr4 101796724 101796843 -53833277 - L1_Mus3 LINE L1 -358 6278 6160 5 1361 2455 71 30 3 chr4 101796844 101797183 -53832937 + L1_Mus3 LINE L1 6286 6633 -5 5 1361 593 281 124 4 chr4 101797184 101797409 -53832711 + Lx9 LINE L1 5542 5793 -54 5 1361 1041 252 28 28 chr4 101797408 101797891 -53832229 - RMER1A Other Other -500 530 121 5 1361 1644 330 89 35 chr4 101798083 101798234 -53831886 + Lx9 LINE L1 6054 6199 -1274 5 1361 474 18 0 0 chr4 101798234 101798289 -53831831 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1361 1857 314 99 32 chr4 101798289 101799333 -53830787 + Lx9 LINE L1 6200 7454 -190 5 1361 198 0 0 0 chr4 101799333 101799355 -53830765 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1361 24 53 0 0 chr4 101799647 101799685 -53830435 + AT_rich Low_complexity Low_complexity 1 38 0 5 1361 334 108 15 15 chr4 101799691 101799757 -53830363 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1361 195 313 11 81 chr4 101800252 101800339 -53829781 + MIRm SINE MIR 184 264 -12 5 1361 278 183 49 16 chr4 101800589 101800650 -53829470 + MIR SINE MIR 85 147 -61 5 1361 266 61 0 0 chr4 101800653 101800686 -53829434 + U2 snRNA snRNA 1 33 -155 5 1361 300 91 0 0 chr4 101801182 101801226 -53828894 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1361 700 234 56 38 chr4 101801228 101801388 -53828732 - B3 SINE B2 -53 163 1 5 1361 253 136 15 15 chr4 101803128 101803195 -53826925 + CT-rich Low_complexity Low_complexity 2 68 0 5 1361 205 195 0 0 chr4 101805476 101805517 -53824603 + A-rich Low_complexity Low_complexity 4 44 0 5 1361 8004 26 23 0 chr4 101806002 101806947 -53823173 + L1Md_F2 LINE L1 5615 6581 -1 5 1361 380 299 86 50 chr4 101807184 101807406 -53822714 - MIR SINE MIR -13 249 20 5 1361 234 238 31 31 chr4 101807690 101807755 -53822365 - MLT1D LTR MaLR -61 444 380 5 1361 361 365 34 48 chr4 101807776 101807870 -53822250 - L1ME1 LINE L1 -20 6159 6066 5 1361 2130 95 23 49 chr4 101807870 101808215 -53821905 + Lx2 LINE L1 6662 6997 0 5 1361 361 365 34 48 chr4 101808215 101808327 -53821793 - L1ME1 LINE L1 -114 6065 5956 5 1361 310 333 144 0 chr4 101808321 101808495 -53821625 - L1MD3 LINE L1 -2067 5928 5730 5 1361 519 31 0 0 chr4 101808502 101808567 -53821553 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1361 233 350 168 69 chr4 101808653 101808957 -53821163 - LTR41 LTR ERVL -110 658 325 5 1361 360 314 49 8 chr4 101809304 101809426 -53820694 - LTR41 LTR ERVL -543 225 99 5 1361 251 241 138 0 chr4 101809528 101809615 -53820505 - L1MD3 LINE L1 -589 5590 5492 5 1361 325 245 119 50 chr4 101809631 101809790 -53820330 - L1MD3 LINE L1 -2890 3256 3087 5 1361 311 331 76 16 chr4 101810070 101810439 -53819681 - L1MEf LINE L1 -3400 2919 2529 5 1361 446 275 92 24 chr4 101810486 101810827 -53819293 - L1MEf LINE L1 -3924 2476 2119 5 1361 479 315 37 0 chr4 101810847 101811009 -53819111 + MER105 DNA DNA 27 194 -10 5 1361 205 358 133 47 chr4 101812058 101812521 -53817599 + L2 LINE L2 2529 3032 -387 5 1361 2605 154 0 19 chr4 101812521 101812983 -53817137 + RLTR11B LTR ERVK 1 453 0 5 1361 205 358 133 47 chr4 101812983 101813029 -53817091 + L2 LINE L2 3033 3081 -338 5 1361 308 136 0 33 chr4 101813042 101813103 -53817017 + C-rich Low_complexity Low_complexity 2 60 0 5 1361 627 178 10 0 chr4 101813996 101814097 -53816023 - RSINE1 SINE B4 -54 111 10 5 1361 434 349 45 38 chr4 101815027 101815316 -53814804 - B4A SINE B4 0 292 2 5 1361 31 0 0 0 chr4 101816351 101816382 -53813738 + AT_rich Low_complexity Low_complexity 1 31 0 5 1361 211 291 44 44 chr4 101816790 101816880 -53813240 - MIRm SINE MIR -4 272 183 5 1361 1355 152 4 4 chr4 101818701 101818926 -53811194 - URR1B DNA MER1_type 0 225 1 5 1361 186 43 0 0 chr4 101819727 101819750 -53810370 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 1361 570 259 15 15 chr4 101819753 101819886 -53810234 + ID_B1 SINE B4 92 224 0 5 1361 261 58 0 55 chr4 101819886 101819941 -53810179 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 5 1361 287 341 15 38 chr4 101821198 101821329 -53808791 - MIRc SINE MIR -50 218 91 5 1361 2866 141 86 32 chr4 101822017 101822550 -53807570 + RLTR1D LTR ERV1 1 589 -16 5 1361 1251 207 143 55 chr4 101822959 101823343 -53806777 + ORR1C2 LTR MaLR 4 421 0 5 1361 4448 199 115 24 chr4 101823344 101824597 -53805523 + ORR1C2-int LTR MaLR 3 1369 -1 5 1361 1351 201 91 62 chr4 101824599 101824971 -53805149 + ORR1C2 LTR MaLR 1 383 -1 5 1361 589 246 14 7 chr4 101824973 101825116 -53805004 - B1F SINE Alu -2 147 4 5 1361 706 254 187 18 chr4 101825821 101826094 -53804026 + MLT1A0 LTR MaLR 36 354 -11 5 1361 503 366 52 34 chr4 101826140 101826468 -53803652 + LTR33 LTR ERVL 150 483 -32 5 1361 510 351 38 41 chr4 101826523 101826824 -53803296 + LTR16A LTR ERVL 107 451 0 5 1361 342 254 121 45 chr4 101828038 101828170 -53801950 + MLT1A0 LTR MaLR 1 142 -223 5 1361 1290 282 62 101 chr4 101828301 101828854 -53801266 - MT2A LTR ERVL 0 533 3 5 1361 1245 272 58 13 chr4 101828863 101829328 -53800792 + L1MA4 LINE L1 5423 5908 -392 5 1361 2767 51 11 0 chr4 101830375 101830726 -53799394 + L1_Mus1 LINE L1 6213 6567 0 5 1361 1744 150 21 42 chr4 101831275 101831608 -53798512 + ORR1A3 LTR MaLR 1 326 0 5 1361 301 292 67 22 chr4 101832884 101833181 -53796939 + L1ME1 LINE L1 5039 5360 -786 5 1361 755 97 0 0 chr4 101833186 101833289 -53796831 + B2_Mm2 SINE B2 4 106 -89 5 1361 957 306 71 50 chr4 101833407 101833821 -53796299 + L1ME1 LINE L1 5354 5791 -388 5 1361 591 15 0 0 chr4 101833821 101833889 -53796231 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1361 396 0 0 0 chr4 101833889 101833933 -53796187 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1361 957 306 71 50 chr4 101833933 101834133 -53795987 + L1ME1 LINE L1 5792 5981 -198 5 1361 449 259 171 6 chr4 101834255 101834430 -53795690 + Lx8 LINE L1 6095 6298 -1175 5 1361 550 287 122 10 chr4 101834560 101834757 -53795363 - RMER20B LTR ERVK -214 413 195 5 1361 2591 290 78 29 chr4 101834995 101835907 -53794213 + Lx8 LINE L1 6317 7273 -200 5 1361 213 0 53 26 chr4 101836408 101836446 -53793674 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1361 1065 97 21 0 chr4 101836449 101836594 -53793526 - B1_Mus1 SINE Alu 0 148 1 5 1361 547 311 92 12 chr4 101836637 101836888 -53793232 - MLT1A1 LTR MaLR -12 396 126 5 1361 495 0 0 0 chr4 101837035 101837090 -53793030 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1361 267 54 0 0 chr4 101837172 101837209 -53792911 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1361 399 41 0 0 chr4 101837270 101837319 -53792801 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1361 297 322 43 80 chr4 101837349 101837700 -53792420 - L1M7 LINE L1 -5395 823 486 5 1361 1066 185 73 5 chr4 101838409 101838615 -53791505 + URR1A DNA MER1_type 6 225 -1 5 1361 785 258 25 25 chr4 101839248 101839411 -53790709 - RSINE1 SINE B4 0 165 3 5 1361 413 336 78 27 chr4 101839986 101840235 -53789885 - MIRb SINE MIR -9 259 1 5 1361 268 329 104 61 chr4 101840504 101840787 -53789333 + L2b LINE L2 3080 3387 0 5 1361 5206 63 6 9 chr4 101841342 101841412 -53788708 - L1Md_F2 LINE L1 -11 6571 6501 5 1361 204 40 0 0 chr4 101841412 101841437 -53788683 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1361 5206 63 6 9 chr4 101841437 101842008 -53788112 - L1Md_F2 LINE L1 -82 6500 5933 5 1361 25 0 0 0 chr4 101842068 101842093 -53788027 + AT_rich Low_complexity Low_complexity 1 25 0 5 1361 2924 174 35 29 chr4 101842110 101842659 -53787461 - Lx5 LINE L1 -365 6685 6134 5 1361 206 32 0 31 chr4 101842910 101842942 -53787178 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 5 1362 456 68 169 12 chr4 101843083 101843189 -53786931 - B2_Mm2 SINE B2 -8 187 47 5 1362 1292 82 6 0 chr4 101843220 101843390 -53786730 - B2_Mm1t SINE B2 -22 171 1 5 1362 263 330 0 0 chr4 101843483 101843580 -53786540 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1362 637 188 110 39 chr4 101843585 101843740 -53786380 - B4 SINE B4 0 292 127 5 1362 253 343 0 106 chr4 101844411 101844571 -53785549 + MIRm SINE MIR 74 216 -60 5 1362 506 163 0 10 chr4 101846005 101846104 -53784016 + CT-rich Low_complexity Low_complexity 4 101 0 5 1362 1274 306 180 35 chr4 101846134 101846812 -53783308 + MTE-int LTR MaLR 771 1546 -34 5 1362 432 345 58 101 chr4 101846801 101847166 -53782954 + ORR1E LTR MaLR 9 357 -2 5 1362 30 0 0 0 chr4 101847212 101847242 -53782878 + AT_rich Low_complexity Low_complexity 1 30 0 5 1362 397 276 34 8 chr4 101847806 101847923 -53782197 - B1F1 SINE Alu -2 147 28 5 1362 476 32 16 0 chr4 101848417 101848479 -53781641 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 5 1362 267 91 43 43 chr4 101848519 101848588 -53781532 + T-rich Low_complexity Low_complexity 2 70 0 5 1362 748 101 100 7 chr4 101849107 101849247 -53780873 - Lx LINE L1 0 6654 6502 5 1362 269 292 86 55 chr4 101849438 101849601 -53780519 - LTR50 LTR ERVL -627 168 1 5 1362 27748 122 33 36 chr4 101850676 101857049 -53773071 - L1Md_F2 LINE L1 -27 6555 217 5 1362 546 269 0 72 chr4 101857187 101857339 -53772781 - ID_B1 SINE B4 0 224 84 5 1362 372 349 85 14 chr4 101858192 101858404 -53771716 - LTR33 LTR ERVL -2 513 287 5 1362 21 36 0 0 chr4 101858737 101858765 -53771355 + AT_rich Low_complexity Low_complexity 1 28 0 5 1362 356 209 58 22 chr4 101858955 101859092 -53771028 + (TCTA)n Simple_repeat Simple_repeat 2 143 0 5 1362 21 0 0 0 chr4 101859113 101859134 -53770986 + AT_rich Low_complexity Low_complexity 1 21 0 5 1362 482 172 0 10 chr4 101860528 101860628 -53769492 + CT-rich Low_complexity Low_complexity 1 99 0 5 1362 237 303 0 83 chr4 101860653 101860725 -53769395 - ID4_ SINE ID -17 66 1 5 1362 408 252 101 0 chr4 101860832 101860931 -53769189 - PB1D10 SINE Alu -8 109 1 5 1362 240 143 0 0 chr4 101861097 101861139 -53768981 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1362 333 269 123 0 chr4 101861692 101861822 -53768298 + MER5A1 DNA MER1_type 9 154 -12 6 1362 375 121 0 0 chr4 101862133 101862191 -53767929 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 6 1362 946 170 7 0 chr4 101862192 101862339 -53767781 - B1_Mus1 SINE Alu 0 148 1 6 1362 26 30 0 0 chr4 101862731 101862764 -53767356 + AT_rich Low_complexity Low_complexity 1 33 0 6 1362 528 263 81 27 chr4 101862906 101863129 -53766991 + MER33 DNA MER1_type 56 290 -34 6 1362 296 312 149 49 chr4 101863397 101863747 -53766373 - L2a LINE L2 -36 3390 3006 6 1362 219 274 48 0 chr4 101864097 101864181 -53765939 + (TCTG)n Simple_repeat Simple_repeat 4 91 0 6 1362 459 0 0 0 chr4 101864181 101864232 -53765888 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1362 1185 73 0 0 chr4 101865371 101865577 -53764543 + (CA)n Simple_repeat Simple_repeat 1 206 0 6 1362 23 77 0 25 chr4 101865740 101865779 -53764341 + AT_rich Low_complexity Low_complexity 1 39 0 6 1362 2104 77 29 0 chr4 101865779 101866053 -53764067 - L1_Mus1 LINE L1 -3 6564 6283 6 1362 23 77 0 25 chr4 101866053 101866093 -53764027 + AT_rich Low_complexity Low_complexity 1 39 0 6 1362 410 295 59 9 chr4 101866176 101866310 -53763810 + B1F SINE Alu 6 145 -5 6 1362 759 185 15 15 chr4 101866326 101866463 -53763657 + B3A SINE B2 1 137 -61 6 1362 814 315 38 26 chr4 101868181 101868448 -53761672 + B4 SINE B4 2 271 -21 6 1362 27 62 0 0 chr4 101868737 101868785 -53761335 + AT_rich Low_complexity Low_complexity 1 48 0 6 1362 323 232 34 79 chr4 101869815 101869904 -53760216 + MTEa LTR MaLR 209 293 -86 6 1362 499 278 43 76 chr4 101869884 101870367 -53759753 - RLTR12B LTR ERVK -9 350 8 6 1362 1204 223 109 36 chr4 101870469 101870799 -53759321 + MTE-int LTR MaLR 1 354 -1226 6 1362 593 240 0 8 chr4 101870799 101870925 -53759195 - Lx9 LINE L1 -328 7316 7192 6 1362 1152 202 102 3 chr4 101870921 101871224 -53758896 + Lx9 LINE L1 7312 7644 0 6 1362 816 304 56 28 chr4 101871245 101871533 -53758587 + MTE-int LTR MaLR 355 650 -930 6 1362 724 158 8 0 chr4 101871529 101871649 -53758471 - MTD LTR MaLR -298 121 1 6 1362 452 221 82 22 chr4 101871649 101871747 -53758373 + MTE-int LTR MaLR 1382 1487 -93 6 1362 1018 269 93 47 chr4 101871769 101871863 -53758257 + ORR1E LTR MaLR 1 102 -257 6 1362 1297 95 0 21 chr4 101871863 101872057 -53758063 + L1Md_F2 LINE L1 6392 6581 -1 6 1362 1018 269 93 47 chr4 101872057 101872305 -53757815 + ORR1E LTR MaLR 103 359 0 6 1362 1346 34 0 0 chr4 101872412 101872558 -53757562 + B1_Mus1 SINE Alu 3 148 0 6 1362 480 327 119 15 chr4 101872960 101873162 -53756958 - MER58A DNA MER1_type 0 224 2 6 1362 470 175 146 0 chr4 101873428 101873531 -53756589 + ORR1E LTR MaLR 4 121 -238 6 1362 870 292 68 70 chr4 101873562 101874030 -53756090 - RLTR11A2 LTR ERVK -60 467 1 6 1362 776 215 59 119 chr4 101874030 101874283 -53755837 + ORR1E LTR MaLR 120 357 -2 6 1362 206 175 47 16 chr4 101874458 101874522 -53755598 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 1362 710 19 29 19 chr4 101875071 101875176 -53754944 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 6 1362 780 234 226 4 chr4 101875207 101875464 -53754656 - ORR1D2 LTR MaLR -56 314 1 6 1362 1538 173 35 27 chr4 101875564 101875874 -53754246 - Lx7 LINE L1 0 7696 7383 6 1362 261 0 0 0 chr4 101875874 101875903 -53754217 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1362 1538 173 35 27 chr4 101875903 101875930 -53754190 - Lx7 LINE L1 -314 7382 7356 6 1362 28 61 0 0 chr4 101875941 101875990 -53754130 + AT_rich Low_complexity Low_complexity 1 49 0 6 1362 2091 236 24 24 chr4 101875990 101876450 -53753670 - Lx7 LINE L1 -333 7363 6904 6 1362 602 83 0 76 chr4 101876805 101876949 -53753171 + (CCCTAA)n Simple_repeat Simple_repeat 2 134 0 6 1362 23 33 0 0 chr4 101876989 101877019 -53753101 + AT_rich Low_complexity Low_complexity 1 30 0 6 1362 229 306 14 14 chr4 101877029 101877102 -53753018 + LTR16D1 LTR ERVL 99 171 -504 6 1362 211 296 80 20 chr4 101877032 101877132 -53752988 - B1F SINE Alu -23 126 21 6 1362 231 349 85 0 chr4 101877670 101877776 -53752344 - MER63B DNA AcHobo -3 433 319 6 1362 502 320 87 39 chr4 101878191 101878532 -53751588 - HERV16-int LTR ERVL -2960 2797 2447 6 1362 690 47 0 0 chr4 101878592 101878678 -53751442 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 1362 735 83 16 8 chr4 101878732 101878854 -53751266 + (TTCTC)n Simple_repeat Simple_repeat 5 127 0 6 1362 297 0 0 0 chr4 101880012 101880045 -53750075 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1362 1355 156 32 9 chr4 101880690 101880910 -53749210 + URR1B DNA MER1_type 1 225 0 6 1362 298 341 143 57 chr4 101880987 101881323 -53748797 - LTR16A1 LTR ERVL -91 365 1 6 1362 975 205 59 15 chr4 101883073 101883276 -53746844 + B3 SINE B2 1 212 -4 6 1362 2237 115 15 61 chr4 101883329 101883671 -53746449 - ORR1A3 LTR MaLR 0 326 1 6 1362 480 292 72 28 chr4 101883714 101883964 -53746156 + L1MA4 LINE L1 5771 6031 -269 6 1362 249 331 80 8 chr4 101884396 101884521 -53745599 + MIRb SINE MIR 108 241 -27 6 1362 415 308 191 86 chr4 101884876 101885200 -53744920 + MLT1D LTR MaLR 5 362 -143 6 1362 307 260 10 40 chr4 101885769 101885869 -53744251 + MLT1E1A LTR MaLR 582 678 -2 6 1362 656 276 138 46 chr4 101885869 101886390 -53743730 - Zaphod DNA Tip100 -148 3883 3304 6 1362 2274 177 46 22 chr4 101886390 101886801 -53743319 - MTC LTR MaLR 0 421 1 6 1362 656 276 138 46 chr4 101886801 101886833 -53743287 - Zaphod DNA Tip100 -728 3303 3275 6 1362 22 0 0 0 chr4 101886868 101886890 -53743230 + AT_rich Low_complexity Low_complexity 1 22 0 6 1362 724 294 108 22 chr4 101887146 101887414 -53742706 - B4 SINE B4 0 292 2 6 1362 676 136 16 0 chr4 101887444 101887569 -53742551 + (TCTA)n Simple_repeat Simple_repeat 3 129 0 6 1362 21 0 0 0 chr4 101887595 101887616 -53742504 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 529 380 52 64 chr4 101887655 101887984 -53742136 - Zaphod DNA Tip100 -3505 526 202 6 1362 537 16 0 0 chr4 101888324 101888386 -53741734 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1362 316 256 51 88 chr4 101888471 101888608 -53741512 - RMER10A LTR ERVL -293 149 18 6 1362 185 385 12 0 chr4 101889252 101889335 -53740785 - L3b LINE CR1 -144 338 255 6 1362 186 189 0 0 chr4 101889583 101889620 -53740500 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1362 254 372 52 15 chr4 101889791 101890121 -53739999 - L1M5 LINE L1 -553 5687 5346 6 1362 279 241 85 11 chr4 101891140 101891316 -53738804 - L1MEe LINE L1 -2820 3326 3138 6 1362 332 351 95 40 chr4 101891466 101891846 -53738274 - L1MEe LINE L1 -3192 2954 2554 6 1362 1312 126 68 0 chr4 101891846 101892068 -53738052 - Lx4B LINE L1 -172 5705 5469 6 1362 7268 152 36 7 chr4 101892071 101893377 -53736743 + Lx4B LINE L1 5711 7054 -4 6 1362 26 30 0 0 chr4 101893385 101893418 -53736702 + AT_rich Low_complexity Low_complexity 1 33 0 6 1362 436 311 83 63 chr4 101893609 101893911 -53736209 - L1MEe LINE L1 -3830 2336 2029 6 1362 297 0 0 0 chr4 101894681 101894714 -53735406 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1362 286 363 80 8 chr4 101896482 101896607 -53733513 + MER45A DNA Tip100 41 174 -4 6 1362 1184 62 0 0 chr4 101896766 101896910 -53733210 + B1_Mm SINE Alu 3 146 -1 6 1362 318 295 19 57 chr4 101897105 101897263 -53732857 - RMER15 LTR ERVL -2 573 422 6 1362 207 0 0 0 chr4 101897473 101897496 -53732624 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1362 573 332 53 79 chr4 101898027 101898367 -53731753 + MLT1A LTR MaLR 39 369 -5 6 1362 667 329 64 74 chr4 101898499 101898903 -53731217 + MLT1C LTR MaLR 1 400 -67 6 1362 369 0 0 0 chr4 101899530 101899571 -53730549 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1362 4419 164 70 69 chr4 101900463 101901364 -53728756 - RMER19B LTR ERVK 0 902 1 6 1362 210 128 0 0 chr4 101901595 101901634 -53728486 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1362 252 0 0 0 chr4 101901761 101901789 -53728331 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1362 291 342 80 34 chr4 101902091 101902331 -53727789 - L2b LINE L2 -191 3235 2986 6 1362 31 0 0 0 chr4 101902385 101902416 -53727704 + AT_rich Low_complexity Low_complexity 1 31 0 6 1362 1079 78 13 0 chr4 101904414 101904568 -53725552 + (TTCTC)n Simple_repeat Simple_repeat 3 158 0 6 1362 357 235 188 0 chr4 101905000 101905085 -53725035 - RSINE1 SINE B4 -8 157 57 6 1362 351 281 58 42 chr4 101906179 101906420 -53723700 - RLTR42-int LTR ERVK -4121 1401 1157 6 1362 261 0 0 0 chr4 101908374 101908403 -53721717 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1362 872 141 83 0 chr4 101908728 101908884 -53721236 - URR1A DNA MER1_type 0 226 58 6 1362 28 0 0 0 chr4 101908954 101908982 -53721138 + AT_rich Low_complexity Low_complexity 1 28 0 6 1362 295 141 15 15 chr4 101909359 101909424 -53720696 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1362 542 322 55 16 chr4 101910326 101910509 -53719611 + MTD LTR MaLR 81 270 -149 6 1362 217 290 52 31 chr4 101910722 101910818 -53719302 - MER5A DNA MER1_type 0 189 92 6 1362 23 0 0 0 chr4 101911453 101911476 -53718644 + AT_rich Low_complexity Low_complexity 1 23 0 6 1362 21 57 0 0 chr4 101912140 101912175 -53717945 + AT_rich Low_complexity Low_complexity 1 35 0 6 1362 348 333 83 42 chr4 101912800 101913158 -53716962 - L2a LINE L2 -1 3425 3011 6 1362 213 315 14 0 chr4 101913206 101913279 -53716841 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1362 21 36 0 0 chr4 101914670 101914698 -53715422 + AT_rich Low_complexity Low_complexity 1 28 0 6 1362 4927 55 2 6 chr4 101914700 101915321 -53714799 + L1Md_F2 LINE L1 5963 6580 -2 6 1362 200 322 116 25 chr4 101915393 101915514 -53714606 + MIRb SINE MIR 93 224 -44 6 1362 259 337 11 33 chr4 101915585 101915677 -53714443 + MLT1B LTR MaLR 301 390 -77 6 1362 1428 239 21 9 chr4 101915819 101916153 -53713967 + MLT1B-int LTR MaLR 244 581 -790 6 1362 2307 157 33 7 chr4 101916173 101916597 -53713523 - Lx LINE L1 -139 6515 6081 6 1362 490 117 29 10 chr4 101916597 101916701 -53713419 + Lx LINE L1 6549 6654 0 6 1362 324 158 0 0 chr4 101916935 101916992 -53713128 + (CAA)n Simple_repeat Simple_repeat 1 57 0 6 1362 410 316 55 23 chr4 101917006 101917223 -53712897 + MLT1B-int LTR MaLR 653 876 -495 6 1362 725 331 93 72 chr4 101917433 101917820 -53712300 + MLT1B-int LTR MaLR 954 1348 -23 6 1362 812 249 139 50 chr4 101918274 101918595 -53711525 + MLT1B LTR MaLR 42 478 -27 6 1362 475 156 0 0 chr4 101918599 101918695 -53711425 + Lx9 LINE L1 7538 7633 -11 6 1362 2097 188 10 0 chr4 101918718 101919107 -53711013 - ORR1B1 LTR MaLR 0 394 2 6 1362 270 0 0 0 chr4 101919274 101919304 -53710816 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1362 21 0 0 0 chr4 101919304 101919325 -53710795 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 275 381 0 0 chr4 101919354 101919438 -53710682 - RSINE1 SINE B4 -4 161 78 7 1362 291 264 66 0 chr4 101919467 101919558 -53710562 + Lx7 LINE L1 7217 7313 -383 7 1362 766 335 51 25 chr4 101919981 101920560 -53709560 + L1ME1 LINE L1 5453 6066 -113 7 1362 234 305 0 12 chr4 101920884 101920967 -53709153 - ID4_ SINE ID 0 83 2 7 1362 741 181 0 0 chr4 101921197 101921374 -53708746 + CT-rich Low_complexity Low_complexity 1 177 0 7 1362 894 149 68 47 chr4 101921374 101921564 -53708556 - B2_Mm2 SINE B2 0 195 2 7 1362 448 251 90 42 chr4 101922551 101922763 -53707357 + Lx8 LINE L1 7242 7463 -10 7 1362 185 363 102 15 chr4 101922897 101923034 -53707086 - L2a LINE L2 -2 3424 3276 7 1362 335 267 76 41 chr4 101923180 101923352 -53706768 - L2a LINE L2 -403 3016 2839 7 1362 293 257 0 14 chr4 101923881 101923952 -53706168 - ID4 SINE ID -9 74 5 7 1362 197 404 18 0 chr4 101925933 101926042 -53704078 + MIR SINE MIR 32 142 -66 7 1362 208 106 20 60 chr4 101926584 101926634 -53703486 + A-rich Low_complexity Low_complexity 4 51 0 7 1362 227 388 78 0 chr4 101930760 101930889 -53699231 - L3b LINE CR1 -13 469 331 7 1362 231 36 0 0 chr4 101931384 101931412 -53698708 + (GTGTG)n Simple_repeat Simple_repeat 1 28 0 7 1362 1302 249 70 97 chr4 101931882 101932313 -53697807 - MTD LTR MaLR 0 419 1 7 1362 1805 164 20 59 chr4 101932618 101933079 -53697041 - RMER17C LTR ERVK -519 439 16 7 1362 345 93 0 0 chr4 101933511 101933565 -53696555 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1362 4048 110 139 77 chr4 101933635 101934470 -53695650 - RMER17D LTR ERVK -2 887 1 7 1362 423 98 0 0 chr4 101935061 101935122 -53694998 + (TA)n Simple_repeat Simple_repeat 1 61 0 7 1362 216 0 0 0 chr4 101935156 101935180 -53694940 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1362 1032 144 0 0 chr4 101935282 101935455 -53694665 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 7 1362 194 128 0 25 chr4 101935614 101935654 -53694466 + GA-rich Low_complexity Low_complexity 1 39 0 7 1362 362 57 0 19 chr4 101935652 101935706 -53694414 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 1362 245 326 81 78 chr4 101936486 101936769 -53693351 + L2a LINE L2 2948 3231 -195 7 1362 542 114 11 0 chr4 101936783 101936871 -53693249 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 7 1362 562 249 202 0 chr4 101936879 101937052 -53693068 - ID_B1 SINE B4 0 224 17 7 1362 3124 42 39 5 chr4 101937224 101937607 -53692513 + MTA_Mm LTR MaLR 1 396 0 7 1362 232 247 50 30 chr4 101939570 101939670 -53690450 - Lx9 LINE L1 -9 7635 7534 7 1362 872 308 12 24 chr4 101939688 101940104 -53690016 - Lx9 LINE L1 -180 7464 7054 7 1362 713 164 23 38 chr4 101940149 101940282 -53689838 + B1F SINE Alu 18 148 -1 7 1362 210 311 13 146 chr4 101941931 101942089 -53688031 + MIRb SINE MIR 18 154 -114 7 1362 22 35 0 0 chr4 101942953 101942982 -53687138 + AT_rich Low_complexity Low_complexity 1 29 0 7 1362 1682 211 112 2 chr4 101942986 101943493 -53686627 - Lx9 LINE L1 -4 7640 7078 7 1362 392 113 0 16 chr4 101943486 101943549 -53686571 + Lx9 LINE L1 7018 7079 -565 7 1362 27 0 0 0 chr4 101943869 101943896 -53686224 + AT_rich Low_complexity Low_complexity 1 27 0 7 1362 619 282 44 15 chr4 101943896 101944101 -53686019 - B3 SINE B2 -5 211 1 7 1362 936 268 5 0 chr4 101944176 101944385 -53685735 - B3 SINE B2 -5 211 2 7 1362 3267 52 0 7 chr4 101944424 101944833 -53685287 - L1Md_F2 LINE L1 0 6582 6177 7 1362 269 335 69 37 chr4 101946058 101946247 -53683873 + L2 LINE L2 2164 2358 -1061 7 1362 247 307 102 0 chr4 101946297 101946385 -53683735 + L2 LINE L2 2468 2564 -855 7 1362 540 0 0 0 chr4 101947284 101947344 -53682776 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1362 852 63 0 0 chr4 101948255 101948366 -53681754 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 7 1362 238 243 41 65 chr4 101949320 101949443 -53680677 - L1MB2 LINE L1 -14 6157 6038 7 1362 252 86 0 0 chr4 101949513 101949548 -53680572 + (TGG)n Simple_repeat Simple_repeat 1 35 0 7 1362 1036 284 18 13 chr4 101949605 101949987 -53680133 - L1MB2 LINE L1 -464 5719 5310 7 1362 367 309 82 147 chr4 101950103 101950507 -53679613 - MTEb LTR MaLR 0 379 3 7 1362 342 254 75 30 chr4 101950526 101950660 -53679460 - L1MB2 LINE L1 -1027 5113 4974 7 1362 2350 137 60 5 chr4 101950682 101951223 -53678897 - Lx2 LINE L1 -5 7003 6378 7 1362 22 0 0 0 chr4 101951224 101951246 -53678874 + AT_rich Low_complexity Low_complexity 1 22 0 7 1362 918 264 117 18 chr4 101951246 101951632 -53678488 - RCHARR1 DNA MER1_type -109 865 442 7 1362 299 145 21 0 chr4 101951637 101951703 -53678417 - L1MB2 LINE L1 -1181 4965 4892 7 1362 373 338 14 68 chr4 101951801 101952023 -53678097 + MER20 DNA MER1_type 6 215 -4 7 1362 567 43 0 0 chr4 101952249 101952319 -53677801 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1362 332 312 0 12 chr4 101952767 101952848 -53677272 + B3 SINE B2 2 81 -135 7 1362 320 130 43 55 chr4 101952912 101953075 -53677045 + (TTATA)n Simple_repeat Simple_repeat 4 164 0 7 1362 248 131 53 21 chr4 101953052 101953146 -53676974 + (TA)n Simple_repeat Simple_repeat 2 98 0 7 1362 221 341 81 54 chr4 101954003 101954189 -53675931 + MIR SINE MIR 70 260 -2 7 1362 1312 152 37 0 chr4 101954291 101954508 -53675612 + URR1B DNA MER1_type 1 225 0 7 1362 222 37 0 0 chr4 101956324 101956351 -53673769 + (G)n Simple_repeat Simple_repeat 1 27 0 7 1362 423 329 71 40 chr4 101957063 101957288 -53672832 - L3 LINE CR1 -14 4475 4244 7 1362 183 184 26 0 chr4 101957340 101957378 -53672742 - MIRm SINE MIR -2 274 236 7 1362 425 318 90 7 chr4 101957506 101957661 -53672459 - RMER15 LTR ERVL 0 575 408 7 1362 181 269 19 0 chr4 101959667 101959719 -53670401 + MIR SINE MIR 210 262 0 7 1362 21 0 0 0 chr4 101960216 101960237 -53669883 + AT_rich Low_complexity Low_complexity 1 21 0 7 1362 40 67 0 0 chr4 101960825 101960900 -53669220 + AT_rich Low_complexity Low_complexity 1 75 0 7 1362 22 0 0 0 chr4 101961044 101961066 -53669054 + AT_rich Low_complexity Low_complexity 1 22 0 7 1362 569 249 109 0 chr4 101961580 101961716 -53668404 + B3 SINE B2 3 159 -57 7 1362 482 31 16 0 chr4 101961716 101961780 -53668340 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1362 569 249 109 0 chr4 101961780 101961836 -53668284 + B3 SINE B2 160 215 -1 7 1362 256 296 95 15 chr4 101961963 101962100 -53668020 + MIRb SINE MIR 72 219 -49 7 1362 21 36 0 0 chr4 101962394 101962422 -53667698 + AT_rich Low_complexity Low_complexity 1 28 0 7 1362 21 0 0 0 chr4 101962447 101962468 -53667652 + AT_rich Low_complexity Low_complexity 1 21 0 7 1362 573 136 0 0 chr4 101963783 101963886 -53666234 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1362 186 71 0 0 chr4 101964648 101964676 -53665444 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1362 342 0 0 0 chr4 101965637 101965675 -53664445 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1362 650 35 12 0 chr4 101966277 101966362 -53663758 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 7 1362 1692 234 44 27 chr4 101966508 101966916 -53663204 - MTD LTR MaLR 0 419 5 7 1362 24 67 0 0 chr4 101968570 101968615 -53661505 + AT_rich Low_complexity Low_complexity 1 45 0 7 1362 910 277 16 110 chr4 101968693 101968884 -53661236 + B4A SINE B4 6 180 -112 7 1362 1583 47 0 0 chr4 101968884 101969076 -53661044 + B2_Mm1t SINE B2 2 193 0 7 1362 910 277 16 110 chr4 101969076 101969192 -53660928 + B4A SINE B4 181 284 -8 7 1362 735 204 28 14 chr4 101969421 101969565 -53660555 + B1_Mur1 SINE Alu 2 147 -2 7 1362 24 0 0 0 chr4 101969838 101969862 -53660258 + AT_rich Low_complexity Low_complexity 1 24 0 7 1362 247 214 51 43 chr4 101970922 101971039 -53659081 - Lx9 LINE L1 -1 7643 7526 7 1362 180 0 0 0 chr4 101971042 101971062 -53659058 + (GA)n Simple_repeat Simple_repeat 1 20 0 7 1362 21 57 0 0 chr4 101971561 101971596 -53658524 + AT_rich Low_complexity Low_complexity 1 35 0 7 1362 4465 60 0 0 chr4 101971840 101972393 -53657727 - L1_Mus2 LINE L1 -2 6564 6012 7 1362 1055 261 69 90 chr4 101973500 101973879 -53656241 - MTE2b LTR MaLR 0 379 9 7 170 207 378 0 11 chr4 101973989 101974080 -53656040 - L2 LINE L2 -665 2754 2665 7 1363 315 304 116 12 chr4 101974152 101974325 -53655795 - Arthur1B DNA Tip100 -9 1216 1026 7 1363 2136 116 9 3 chr4 101977720 101978039 -53652081 - ORR1A4 LTR MaLR -8 321 1 7 1363 231 366 45 39 chr4 101979250 101979429 -53650691 - MIRb SINE MIR -26 242 63 7 1363 501 322 77 0 chr4 101979434 101979577 -53650543 + RSINE1 SINE B4 10 163 -2 7 1363 228 35 0 0 chr4 101979592 101979621 -53650499 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 7 1363 584 160 0 36 chr4 101981492 101981602 -53648518 - MT2A LTR ERVL -427 106 1 7 1363 367 185 16 16 chr4 101981602 101981665 -53648455 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 7 1363 492 48 0 0 chr4 101981665 101981728 -53648392 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 7 1363 367 185 16 16 chr4 101981728 101981785 -53648335 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 7 1363 540 289 107 15 chr4 101981831 101982056 -53648064 + MLT1E2 LTR MaLR 39 289 -216 7 1363 366 173 0 0 chr4 101982113 101982188 -53647932 + (TA)n Simple_repeat Simple_repeat 2 76 0 7 1363 201 250 0 0 chr4 101982236 101982280 -53647840 + GA-rich Low_complexity Low_complexity 4 47 0 7 1363 527 269 58 40 chr4 101982499 101982673 -53647447 + MLT1E2 LTR MaLR 315 491 -14 7 1363 30 27 0 0 chr4 101983671 101983708 -53646412 + AT_rich Low_complexity Low_complexity 1 37 0 7 1363 317 282 38 25 chr4 101983737 101983817 -53646303 + MER33 DNA MER1_type 5 85 -239 7 1363 223 255 0 73 chr4 101983843 101983898 -53646222 + PB1D9 SINE Alu 1 51 -69 7 1363 641 102 9 0 chr4 101983902 101984010 -53646110 + (GGGA)n Simple_repeat Simple_repeat 3 111 0 7 1363 471 217 28 28 chr4 101984032 101984141 -53645979 + B1_Mur1 SINE Alu 40 148 -1 7 1363 281 264 94 47 chr4 101984141 101984332 -53645788 + MER33 DNA MER1_type 123 322 -2 7 1363 849 302 5 0 chr4 101984953 101985142 -53644978 - B3 SINE B2 -25 191 2 7 1363 564 146 0 0 chr4 101985185 101985267 -53644853 + B3 SINE B2 1 82 -134 7 1363 3420 76 0 15 chr4 101986582 101987049 -53643071 + L1Md_F2 LINE L1 6123 6582 0 7 1363 1236 147 5 5 chr4 101987357 101987555 -53642565 + URR1A DNA MER1_type 24 221 -5 8 1363 342 61 0 0 chr4 101987633 101987682 -53642438 + (TATG)n Simple_repeat Simple_repeat 2 50 0 8 1363 649 308 32 18 chr4 101988127 101988345 -53641775 - RMER15 LTR ERVL -16 559 339 8 1363 370 253 32 32 chr4 101989606 101989700 -53640420 - PB1D10 SINE Alu -9 108 15 8 1363 250 210 32 16 chr4 101989655 101989718 -53640402 - B4A SINE B4 -149 143 80 8 1363 472 212 15 0 chr4 101990157 101990289 -53639831 + (TA)n Simple_repeat Simple_repeat 1 134 0 8 1363 519 272 54 0 chr4 101991333 101991480 -53638640 + RSINE1 SINE B4 2 156 -9 8 1363 1149 129 119 0 chr4 101992262 101992463 -53637657 + URR1A DNA MER1_type 1 225 -1 8 1363 294 269 26 0 chr4 101992495 101992573 -53637547 - Kanga1a DNA Tc2 -664 90 11 8 1363 203 156 0 0 chr4 101993949 101993981 -53636139 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1363 396 0 0 0 chr4 101993981 101994025 -53636095 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1363 408 207 231 0 chr4 101994026 101994147 -53635973 - B1F SINE Alu 0 149 1 8 1363 834 239 12 0 chr4 101994167 101994330 -53635790 - B3 SINE B2 0 216 52 8 1363 23 68 0 0 chr4 101994560 101994604 -53635516 + AT_rich Low_complexity Low_complexity 1 44 0 8 1363 247 217 199 19 chr4 101995360 101995571 -53634549 - Lx9 LINE L1 -15 7629 7381 8 1363 366 233 208 77 chr4 101995815 101995945 -53634175 + B1F SINE Alu 2 148 -1 8 1363 507 278 132 107 chr4 101996423 101996786 -53633334 + MTEa LTR MaLR 1 372 -7 8 1363 1081 229 23 79 chr4 101996900 101997332 -53632788 + Lx7 LINE L1 7284 7691 -5 8 1363 439 304 47 47 chr4 101997356 101997549 -53632571 + B3A SINE B2 1 193 -5 8 1363 425 97 0 14 chr4 101997625 101997698 -53632422 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1363 261 257 0 0 chr4 101999352 101999422 -53630698 + A-rich Low_complexity Low_complexity 1 70 0 8 1363 231 314 23 126 chr4 102000837 102001012 -53629108 - RLTR33 LTR ERVK -72 606 450 1 1363 369 234 9 31 chr4 102001380 102001502 -53628618 - B1_Mur4 SINE Alu -1 119 2 2 1363 4998 62 5 8 chr4 102002693 102003387 -53626733 + L1_Mus3 LINE L1 5989 6638 0 3 1363 527 89 22 0 chr4 102007379 102007469 -53622651 + (CAAAA)n Simple_repeat Simple_repeat 4 95 0 4 1363 270 0 0 0 chr4 102007674 102007704 -53622416 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1363 824 168 15 0 chr4 102008754 102008891 -53621229 - B1_Mur4 SINE Alu -7 143 5 6 1363 5375 218 100 14 chr4 102008910 102010272 -53619848 - Lx7 LINE L1 -15 7681 6203 7 1363 5261 198 38 19 chr4 102010308 102011724 -53618396 - Lx7 LINE L1 -1601 6095 4658 7 1363 948 265 68 48 chr4 102011977 102012390 -53617730 + L1M3 LINE L1 2417 2837 -3306 8 1363 231 244 0 0 chr4 102012431 102012509 -53617611 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1363 260 341 91 86 chr4 102012649 102012835 -53617285 - RMER13A LTR ERVK -673 187 1 1 1363 276 250 0 0 chr4 102012836 102012892 -53617228 - MERVK26-int LTR ERVK -2 6917 6862 1 1363 1194 61 0 0 chr4 102013082 102013229 -53616891 - B1_Mus2 SINE Alu 0 147 1 1 1363 991 301 141 20 chr4 102013646 102014475 -53615645 + L1M3 LINE L1 2922 3850 -2290 8 1363 1756 44 18 4 chr4 102014475 102014702 -53615418 + L1Md_F3 LINE L1 6355 6584 0 1 1363 737 292 190 30 chr4 102015066 102016009 -53614111 + L1M3 LINE L1 3895 4988 -1152 8 1363 412 68 27 0 chr4 102018281 102018354 -53611766 + (TTTTTG)n Simple_repeat Simple_repeat 6 80 0 1 1363 23 0 0 0 chr4 102020115 102020138 -53609982 + AT_rich Low_complexity Low_complexity 1 23 0 1 1363 3687 40 0 13 chr4 102020368 102020823 -53609297 + L1Md_F2 LINE L1 6133 6581 -1 1 1363 492 62 0 0 chr4 102020858 102020922 -53609198 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 1 1363 210 327 49 56 chr4 102021686 102021848 -53608272 - L3 LINE CR1 -620 3869 3709 1 1363 1287 254 109 0 chr4 102022172 102022531 -53607589 + MTD LTR MaLR 2 399 -20 1 1363 207 370 58 2 chr4 102022612 102022715 -53607405 + MIRb SINE MIR 59 169 -99 1 1363 795 171 186 6 chr4 102023350 102023527 -53606593 + B3 SINE B2 5 213 -3 2 1363 527 298 8 8 chr4 102023811 102023943 -53606177 + B1F1 SINE Alu 9 140 -9 2 1363 1506 243 68 47 chr4 102026032 102026439 -53603681 - MTD LTR MaLR 0 419 3 2 1363 217 317 79 24 chr4 102028072 102028198 -53601922 - MIR SINE MIR -127 135 3 2 1363 207 239 0 80 chr4 102028310 102028360 -53601760 + MIRm SINE MIR 91 136 -140 2 1363 227 260 0 40 chr4 102028361 102028437 -53601683 + RLTR47_MM LTR ERV1 150 222 -310 2 1363 31 0 0 0 chr4 102028620 102028651 -53601469 + AT_rich Low_complexity Low_complexity 1 31 0 2 1363 230 136 0 22 chr4 102028672 102028717 -53601403 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1363 234 244 101 34 chr4 102029051 102029170 -53600950 + MER33 DNA MER1_type 194 320 -4 2 1363 405 154 33 0 chr4 102029359 102029450 -53600670 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 1363 387 309 0 0 chr4 102029469 102029553 -53600567 - RSINE1 SINE B4 -34 131 48 3 1363 488 304 78 38 chr4 102029570 102030070 -53600050 - L1ME2 LINE L1 -330 5834 5315 3 1363 1805 214 32 22 chr4 102031235 102031645 -53598475 - MTD LTR MaLR -5 414 1 3 1363 348 24 0 0 chr4 102031908 102031949 -53598171 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1363 278 202 8 141 chr4 102032022 102032143 -53597977 + L1MA7 LINE L1 5939 6043 -248 3 1363 449 259 121 18 chr4 102032524 102032713 -53597407 - B3 SINE B2 -3 192 6 3 1363 378 61 0 0 chr4 102032856 102032905 -53597215 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 3 1363 660 141 0 0 chr4 102034528 102034649 -53595471 + (TC)n Simple_repeat Simple_repeat 2 122 0 3 1363 1187 167 18 9 chr4 102036002 102036226 -53593894 + URR1A DNA MER1_type 1 226 0 3 1363 598 296 12 30 chr4 102036484 102036651 -53593469 + RSINE1 SINE B4 2 165 0 3 1363 605 153 8 0 chr4 102036652 102036776 -53593344 + (CA)n Simple_repeat Simple_repeat 2 126 0 4 1363 485 291 85 66 chr4 102036855 102037309 -53592811 - L1MB3 LINE L1 -2 6181 5718 4 1363 2055 122 6 55 chr4 102037309 102037655 -53592465 - ORR1A4 LTR MaLR 0 329 1 4 1363 485 291 85 66 chr4 102037655 102037682 -53592438 - L1MB3 LINE L1 -466 5717 5691 4 1363 265 375 95 7 chr4 102037991 102038128 -53591992 + B4A SINE B4 30 178 -114 4 1363 345 316 35 0 chr4 102038282 102038396 -53591724 - ORR1E LTR MaLR -227 132 15 4 1363 489 110 0 0 chr4 102038415 102038488 -53591632 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1363 419 286 84 56 chr4 102038529 102038707 -53591413 - MER5A DNA MER1_type -3 186 4 4 1363 180 0 0 0 chr4 102039409 102039429 -53590691 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1363 21 0 0 0 chr4 102039834 102039855 -53590265 + AT_rich Low_complexity Low_complexity 1 21 0 4 1363 304 306 87 63 chr4 102040447 102040653 -53589467 - MIRb SINE MIR -23 245 35 4 1363 211 376 0 108 chr4 102041536 102041659 -53588461 - MIR SINE MIR -2 260 146 5 1363 666 299 117 6 chr4 102041659 102041985 -53588135 + MLT1A0 LTR MaLR 1 362 -3 5 1363 211 374 31 109 chr4 102041985 102042057 -53588063 - MIR SINE MIR -116 152 84 5 1363 226 373 82 0 chr4 102042518 102042676 -53587444 + MER5B DNA MER1_type 6 176 -2 5 1363 333 123 0 0 chr4 102043007 102043072 -53587048 + (T)n Simple_repeat Simple_repeat 1 65 0 5 1363 41 0 0 0 chr4 102043485 102043526 -53586594 + AT_rich Low_complexity Low_complexity 1 41 0 5 1363 231 88 99 0 chr4 102044535 102044579 -53585541 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1363 3111 70 2 2 chr4 102044579 102044979 -53585141 + MTB LTR MaLR 1 400 0 5 1363 240 35 0 0 chr4 102044983 102045012 -53585108 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1363 231 88 99 0 chr4 102045012 102045053 -53585067 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1363 202 169 16 48 chr4 102045066 102045128 -53584992 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 5 1363 225 218 0 18 chr4 102046159 102046215 -53583905 + CT-rich Low_complexity Low_complexity 3 57 0 6 1363 4520 183 39 9 chr4 102046216 102047095 -53583025 - Lx5 LINE L1 -3 7047 6143 6 1363 259 300 11 32 chr4 102048275 102048368 -53581752 - MLT1A LTR MaLR 0 408 318 6 1363 704 218 35 7 chr4 102048482 102048625 -53581495 + B1F SINE Alu 1 147 -2 6 1363 354 293 61 61 chr4 102048627 102048758 -53581362 - MLT1A LTR MaLR -223 151 21 6 1363 192 284 52 83 chr4 102049211 102049307 -53580813 - L4 LINE RTE -1642 387 295 6 1363 383 366 52 22 chr4 102049324 102049556 -53580564 + L1MC4a LINE L1 7165 7403 -479 6 1363 320 260 45 32 chr4 102049777 102049932 -53580188 + L1MC4a LINE L1 7712 7868 -14 6 1363 195 188 0 0 chr4 102050045 102050093 -53580027 + GA-rich Low_complexity Low_complexity 1 48 0 6 1363 24 32 0 0 chr4 102050255 102050286 -53579834 + AT_rich Low_complexity Low_complexity 1 31 0 6 1363 418 289 74 0 chr4 102051694 102051829 -53578291 + RSINE1 SINE B4 2 146 -19 6 1363 183 80 0 0 chr4 102051839 102051864 -53578256 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1363 309 26 0 0 chr4 102051960 102051998 -53578122 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1363 464 163 0 55 chr4 102051998 102052108 -53578012 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1363 639 291 37 31 chr4 102052166 102052460 -53577660 - Lx9 LINE L1 -133 7511 7216 7 1363 387 0 0 0 chr4 102052479 102052522 -53577598 + (TTA)n Simple_repeat Simple_repeat 3 45 0 7 1363 6622 82 42 1 chr4 102052522 102053639 -53576481 - L1_Mus4 LINE L1 -17 6619 5444 7 1363 394 118 0 26 chr4 102053631 102053709 -53576411 - L1Md_F2 LINE L1 -13 6569 6494 7 1363 3400 53 2 0 chr4 102053714 102054131 -53575989 + L1_Mus1 LINE L1 6150 6567 0 7 1363 1666 251 26 87 chr4 102054143 102054709 -53575411 - Lx9 LINE L1 -447 7197 6666 7 1363 210 292 60 30 chr4 102054913 102054980 -53575140 - MIRb SINE MIR -12 256 188 7 1363 756 325 35 18 chr4 102055411 102055696 -53574424 - B4 SINE B4 -2 290 1 7 1363 459 0 0 0 chr4 102056300 102056351 -53573769 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1363 399 349 125 40 chr4 102056371 102056619 -53573501 + B4A SINE B4 24 292 0 8 1363 837 78 39 0 chr4 102056643 102056796 -53573324 + (CA)n Simple_repeat Simple_repeat 2 160 0 8 1363 244 241 12 25 chr4 102056807 102056888 -53573232 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 1363 2067 219 25 23 chr4 102057702 102058341 -53571779 - L1_Rod LINE L1 -1702 4178 3549 8 1363 324 200 12 0 chr4 102058358 102058438 -53571682 + Lx9 LINE L1 7556 7636 -8 8 1363 378 215 106 16 chr4 102058572 102058695 -53571425 + L1MC1 LINE L1 6191 6324 -9 8 1363 1640 215 18 34 chr4 102058758 102059254 -53570866 + L1_Rod LINE L1 3062 3549 -2298 8 1363 3630 224 61 21 chr4 102059258 102059287 -53570833 - Lx9 LINE L1 -183 7461 7433 8 1363 510 91 0 0 chr4 102059287 102059364 -53570756 + (TATG)n Simple_repeat Simple_repeat 3 79 0 8 1363 3630 224 61 21 chr4 102059364 102060290 -53569830 - Lx9 LINE L1 -212 7432 6469 8 1363 693 233 160 15 chr4 102060287 102060549 -53569571 + Lx9 LINE L1 6168 6467 -1177 8 1363 304 245 42 11 chr4 102060549 102060644 -53569476 - L1_Rod LINE L1 -2813 3034 2937 8 1363 3792 190 157 18 chr4 102061245 102062177 -53567943 - Lx5 LINE L1 -3 7047 5987 8 1363 233 398 92 45 chr4 102062845 102063203 -53566917 - MamGypLTR1d LTR Gypsy -29 784 410 8 1363 224 342 71 13 chr4 102064847 102065001 -53565119 - L2 LINE L2 -911 2508 2346 9 1363 263 288 21 42 chr4 102066421 102066541 -53563579 - MIRc SINE MIR -108 160 38 9 1363 239 359 55 40 chr4 102066785 102066985 -53563135 - MIRb SINE MIR -15 253 51 9 1363 570 375 123 9 chr4 102067909 102068444 -53561676 - MLT1E2 LTR MaLR -24 603 8 9 1363 821 241 47 147 chr4 102068794 102068867 -53561253 - ORR1D2 LTR MaLR 0 370 303 9 1363 1224 62 0 0 chr4 102068867 102069013 -53561107 + B1_Mm SINE Alu 2 147 0 9 1363 821 241 47 147 chr4 102069013 102069348 -53560772 - ORR1D2 LTR MaLR -68 302 3 9 1363 221 286 0 0 chr4 102070322 102070378 -53559742 + (TA)n Simple_repeat Simple_repeat 1 56 0 9 1363 220 381 76 0 chr4 102070387 102070492 -53559628 - L2a LINE L2 -1 3425 3313 9 1363 387 0 0 0 chr4 102071440 102071483 -53558637 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1363 24 0 0 0 chr4 102071613 102071637 -53558483 + AT_rich Low_complexity Low_complexity 1 24 0 9 1363 610 35 24 0 chr4 102072312 102072397 -53557723 + (GA)n Simple_repeat Simple_repeat 1 87 0 1 1363 240 320 103 0 chr4 102073315 102073412 -53556708 - L2b LINE L2 -7 3368 3262 1 1363 673 184 249 6 chr4 102073911 102074080 -53556040 + B3 SINE B2 1 210 -6 1 1363 623 351 81 11 chr4 102074257 102074528 -53555592 + B4A SINE B4 2 291 -1 1 1363 236 238 20 26 chr4 102074708 102074859 -53555261 + CT-rich Low_complexity Low_complexity 3 152 0 1 1363 393 233 82 16 chr4 102074866 102074988 -53555132 - B1F1 SINE Alu -15 134 5 1 1363 1768 165 68 85 chr4 102075357 102075709 -53554411 + ORR1B1 LTR MaLR 41 386 -8 1 1363 634 309 19 72 chr4 102076102 102076198 -53553922 - B3A SINE B2 0 198 113 1 1363 1150 151 60 19 chr4 102076198 102076414 -53553706 + URR1B DNA MER1_type 1 225 0 1 1363 634 309 19 72 chr4 102076414 102076526 -53553594 - B3A SINE B2 -86 112 1 1 1363 459 327 55 4 chr4 102077423 102077678 -53552442 - L1MB7 LINE L1 -37 6147 5880 1 1363 261 297 503 0 chr4 102077698 102077879 -53552241 - L1MB7 LINE L1 -360 5824 5553 1 1363 907 281 112 30 chr4 102078028 102078604 -53551516 - L1MB7 LINE L1 -752 5394 4772 1 1363 250 288 0 70 chr4 102078721 102078792 -53551328 - ID4 SINE ID -13 70 5 1 1363 524 277 168 42 chr4 102078795 102079224 -53550896 - L1MB7 LINE L1 -2155 3991 3509 1 1363 263 309 74 11 chr4 102079767 102079862 -53550258 + L2b LINE L2 3274 3374 -1 1 1363 250 239 15 0 chr4 102080547 102080614 -53549506 + CT-rich Low_complexity Low_complexity 2 69 0 1 1363 234 0 0 0 chr4 102080618 102080644 -53549476 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1363 551 320 107 6 chr4 102080651 102080983 -53549137 - MLT2C2 LTR ERVL -41 423 50 1 1363 213 299 20 49 chr4 102081473 102081575 -53548545 - L2c LINE L2 -30 3357 3259 1 1363 180 276 145 50 chr4 102081972 102082193 -53547927 + L2c LINE L2 3136 3377 -10 1 1363 463 274 11 33 chr4 102082618 102082799 -53547321 + CT-rich Low_complexity Low_complexity 4 180 0 1 1363 258 298 131 109 chr4 102082907 102083220 -53546900 - MLT1M LTR MaLR -19 653 334 1 1363 279 289 131 45 chr4 102084600 102084821 -53545299 + L2 LINE L2 2571 2810 -609 1 1363 207 0 0 0 chr4 102084868 102084891 -53545229 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1363 3096 16 11 6 chr4 102085339 102085704 -53544416 - L1Md_F3 LINE L1 -14 6570 6204 1 1363 200 373 182 7 chr4 102086113 102086256 -53543864 - MIRc SINE MIR -97 171 4 1 1363 292 333 0 9 chr4 102086967 102087073 -53543047 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1363 244 359 67 22 chr4 102087509 102087643 -53542477 + MIRb SINE MIR 18 157 -111 1 1363 324 0 0 0 chr4 102088031 102088067 -53542053 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1363 194 342 14 14 chr4 102088607 102088681 -53541439 + MIRb SINE MIR 120 193 -75 1 1363 1218 111 5 32 chr4 102088955 102089141 -53540979 - B2_Mm2 SINE B2 -14 181 1 1 1363 519 45 0 0 chr4 102089752 102089818 -53540302 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1363 346 286 35 0 chr4 102090050 102090221 -53539899 + L1MB7 LINE L1 4285 4461 -1685 1 1363 660 279 27 5 chr4 102090650 102090870 -53539250 + L1MB7 LINE L1 5326 5550 -624 1 1363 320 250 56 22 chr4 102090896 102090986 -53539134 - MTD LTR MaLR -321 98 6 1 1363 271 248 102 8 chr4 102091163 102091281 -53538839 + L1MB7 LINE L1 6036 6164 -20 1 1363 1030 94 12 6 chr4 102091354 102091515 -53538605 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 1 1363 858 325 21 29 chr4 102091839 102092118 -53538002 + B4A SINE B4 2 278 -14 1 1363 231 329 64 40 chr4 102092271 102092529 -53537591 - L2b LINE L2 -9 3366 3102 1 1363 366 279 98 30 chr4 102092584 102092717 -53537403 - B1F1 SINE Alu -7 142 1 1 1363 198 317 244 24 chr4 102092771 102093017 -53537103 - L2b LINE L2 -387 3032 2733 1 1363 247 150 33 0 chr4 102093041 102093101 -53537019 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1 1363 22 56 0 0 chr4 102094627 102094663 -53535457 + AT_rich Low_complexity Low_complexity 1 36 0 1 1363 306 245 17 74 chr4 102094858 102094979 -53535141 - ID4 SINE ID -27 125 9 1 1363 214 206 159 0 chr4 102095582 102095645 -53534475 + MIRb SINE MIR 188 260 -8 1 1363 235 271 0 0 chr4 102100407 102100455 -53529665 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1363 387 0 0 0 chr4 102100572 102100615 -53529505 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1363 222 282 198 9 chr4 102100714 102100825 -53529295 - MIRb SINE MIR -113 155 24 1 1363 198 0 0 0 chr4 102102532 102102554 -53527566 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1 1363 1062 98 0 0 chr4 102102947 102103100 -53527020 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 1363 244 286 13 0 chr4 102103521 102103598 -53526522 - L3b LINE CR1 -204 278 201 1 1363 21 0 0 0 chr4 102104584 102104605 -53525515 + AT_rich Low_complexity Low_complexity 1 21 0 1 1364 1605 32 0 16 chr4 102105956 102106149 -53523971 + B2_Mm1a SINE B2 2 191 -2 1 1364 227 333 144 0 chr4 102106937 102107027 -53523093 - RMER15 LTR ERVL -69 506 404 1 1364 455 83 0 27 chr4 102107791 102107865 -53522255 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 1 1364 1362 208 114 0 chr4 102107865 102108216 -53521904 - Lx LINE L1 -4 6650 6260 1 1364 3328 28 0 57 chr4 102108631 102109051 -53521069 - MTA_Mm LTR MaLR 0 396 1 1 1364 363 304 93 49 chr4 102109768 102109993 -53520127 - L3b LINE CR1 -140 342 108 1 1364 786 261 18 28 chr4 102110238 102110455 -53519665 + B3 SINE B2 1 215 -1 1 1364 32 26 0 0 chr4 102110717 102110756 -53519364 + AT_rich Low_complexity Low_complexity 1 39 0 1 1364 291 318 110 39 chr4 102111577 102111731 -53518389 + MIR3 SINE MIR 32 196 -12 1 1364 32 0 0 0 chr4 102111824 102111856 -53518264 + AT_rich Low_complexity Low_complexity 1 32 0 1 1364 189 333 53 0 chr4 102112068 102112143 -53517977 + MIR3 SINE MIR 3 81 -127 1 1364 757 291 5 42 chr4 102113842 102114032 -53516088 - B3A SINE B2 -15 183 1 1 1364 420 272 0 58 chr4 102114763 102114884 -53515236 - Lx9 LINE L1 -1207 6437 6324 1 1364 1006 89 19 6 chr4 102115077 102115235 -53514885 - L1_Mus3 LINE L1 -1 6637 6478 1 1364 273 352 63 44 chr4 102118335 102118540 -53511580 - MIRb SINE MIR -45 223 15 1 1364 267 331 33 40 chr4 102119107 102119258 -53510862 - MLT1N2 LTR MaLR 0 562 413 1 1364 300 53 0 0 chr4 102120751 102120789 -53509331 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1364 787 322 29 32 chr4 102121843 102122122 -53507998 - B4A SINE B4 -9 283 6 1 1364 228 67 0 0 chr4 102122591 102122621 -53507499 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1364 713 310 12 6 chr4 102122630 102122802 -53507318 - B3A SINE B2 -25 173 1 1 1364 746 218 117 15 chr4 102123048 102123244 -53506876 + B3 SINE B2 1 216 0 1 1364 198 103 0 0 chr4 102123247 102123276 -53506844 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 1 1364 432 37 0 0 chr4 102124624 102124678 -53505442 + (TTG)n Simple_repeat Simple_repeat 1 54 0 1 1364 474 65 0 0 chr4 102124679 102124741 -53505379 + (TGG)n Simple_repeat Simple_repeat 1 62 0 1 1364 407 276 55 43 chr4 102125517 102125680 -53504440 + MLT2B4 LTR ERVL 4 168 -388 1 1364 654 13 0 0 chr4 102128278 102128353 -53501767 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1364 579 290 30 95 chr4 102128366 102128598 -53501522 - Lx5 LINE L1 -23 7027 6811 1 1364 210 228 0 0 chr4 102128938 102129039 -53501081 + (TCTG)n Simple_repeat Simple_repeat 2 102 0 1 1364 1732 277 30 15 chr4 102129783 102130249 -53499871 + Lx8 LINE L1 6747 7219 -254 1 1364 186 43 0 0 chr4 102130700 102130723 -53499397 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1364 387 0 0 0 chr4 102131948 102131991 -53498129 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1364 360 0 0 0 chr4 102131992 102132032 -53498088 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1364 270 357 122 28 chr4 102132321 102132599 -53497521 - L2b LINE L2 -213 3162 2866 1 1364 22 0 0 0 chr4 102132628 102132650 -53497470 + AT_rich Low_complexity Low_complexity 1 22 0 1 1364 221 397 63 14 chr4 102132775 102132982 -53497138 - L2b LINE L2 -822 2597 2381 1 1364 218 283 0 0 chr4 102133081 102133141 -53496979 + MIR SINE MIR 44 103 -165 1 1364 288 329 0 0 chr4 102133204 102133275 -53496845 + ID_B1 SINE B4 82 152 -72 1 1364 718 159 0 0 chr4 102133275 102133382 -53496738 + B3 SINE B2 1 107 -109 1 1364 652 29 29 19 chr4 102133526 102133631 -53496489 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 1 1364 396 0 0 0 chr4 102133872 102133916 -53496204 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1364 468 0 0 0 chr4 102133916 102133967 -53496153 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1364 429 95 0 0 chr4 102134292 102134355 -53495765 + (CAGG)n Simple_repeat Simple_repeat 2 64 0 1 1364 561 68 0 0 chr4 102134426 102134500 -53495620 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1364 6772 102 24 4 chr4 102134619 102136004 -53494116 - L1_Mus4 LINE L1 -3 6633 5191 1 1364 5043 138 4 1 chr4 102136004 102136792 -53493328 + L1_Mus4 LINE L1 4400 5189 -694 1 1364 970 205 211 8 chr4 102136893 102137158 -53492962 - Lx9 LINE L1 -69 7575 7257 1 1364 2900 158 21 47 chr4 102137159 102137735 -53492385 + RLTR12A LTR ERVK 1 561 -7 1 1364 4368 218 50 64 chr4 102137738 102138763 -53491357 - Lx9 LINE L1 -383 7261 6248 1 1364 342 0 0 0 chr4 102138763 102138801 -53491319 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 1 1364 4368 218 50 64 chr4 102138801 102138927 -53491193 - Lx9 LINE L1 -1397 6247 6126 1 1364 5835 223 139 36 chr4 102138943 102141030 -53489090 - Lx9 LINE L1 -1663 5981 3647 1 1364 247 52 68 17 chr4 102142828 102142887 -53487233 + (CAAAA)n Simple_repeat Simple_repeat 1 62 0 1 1364 572 110 55 0 chr4 102143192 102143283 -53486837 + Lx7 LINE L1 7601 7696 0 1 1364 2376 150 36 24 chr4 102143728 102144107 -53486013 + MTC LTR MaLR 1 387 -34 1 1364 3065 98 2 2 chr4 102144107 102144507 -53485613 + MTB LTR MaLR 1 400 0 1 1364 2376 150 36 24 chr4 102144507 102144543 -53485577 + MTC LTR MaLR 388 421 0 1 1364 1087 182 15 5 chr4 102145478 102145677 -53484443 - MTC LTR MaLR -55 366 166 1 1364 234 0 0 0 chr4 102146038 102146064 -53484056 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1364 516 145 0 0 chr4 102146120 102146237 -53483883 + (TC)n Simple_repeat Simple_repeat 2 118 0 1 1364 207 0 0 0 chr4 102146238 102146261 -53483859 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1364 865 158 14 28 chr4 102146263 102146406 -53483714 - B1_Mur4 SINE Alu -7 143 3 1 1364 552 209 263 16 chr4 102146540 102146734 -53483386 - MTD LTR MaLR 0 419 178 2 1364 582 317 114 69 chr4 102146735 102146958 -53483162 - L1M5 LINE L1 -3019 3127 2919 2 1364 450 0 0 0 chr4 102146958 102147008 -53483112 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1364 829 92 0 111 chr4 102147012 102147183 -53482937 - Lx3C LINE L1 0 6976 6825 2 1364 582 317 114 69 chr4 102147183 102147869 -53482251 - L1M5 LINE L1 -3228 2918 2172 2 1364 509 247 119 76 chr4 102147963 102148301 -53481819 - MER57D LTR ERV1 -31 403 6 2 1364 396 59 0 0 chr4 102148551 102148602 -53481518 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1364 215 309 24 47 chr4 102148996 102149081 -53481039 + MIRb SINE MIR 58 140 -128 2 1364 1032 206 24 19 chr4 102149102 102149315 -53480805 + B3 SINE B2 3 216 0 2 1364 4031 123 14 7 chr4 102150051 102150626 -53479494 - Lx2B LINE L1 -4 6996 6418 2 1364 1116 92 0 0 chr4 102150626 102150767 -53479353 + Lx2B LINE L1 6277 6417 -583 2 1364 21 0 0 0 chr4 102151056 102151077 -53479043 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 313 179 18 0 chr4 102151440 102151496 -53478624 - HAL1-3A_ME LINE L1 -828 2030 1974 2 1364 253 324 16 83 chr4 102153048 102153169 -53476951 - L2c LINE L2 -3 3384 3272 2 1364 728 314 53 33 chr4 102154448 102154751 -53475369 + MER2 DNA MER2_type 37 345 0 2 1364 181 254 83 103 chr4 102154761 102154906 -53475214 - L2c LINE L2 -173 3202 3061 2 1364 405 300 6 85 chr4 102155455 102155619 -53474501 + B4A SINE B4 1 151 -141 2 1364 248 345 0 0 chr4 102155631 102155686 -53474434 + B4A SINE B4 224 278 -14 2 1364 235 271 39 136 chr4 102155715 102155869 -53474251 - RMER12 LTR ERVK -487 835 697 2 1364 802 206 150 16 chr4 102156924 102157111 -53473009 + B3 SINE B2 3 214 -2 2 1364 204 208 38 0 chr4 102157111 102157164 -53472956 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1364 443 281 35 0 chr4 102157820 102157934 -53472186 + MER44D DNA MER2_type 4 121 -584 2 1364 363 44 0 0 chr4 102157966 102158011 -53472109 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1364 644 380 23 4 chr4 102158020 102158284 -53471836 - B4A SINE B4 -18 274 6 2 1364 397 269 54 101 chr4 102158320 102158469 -53471651 + MER44D DNA MER2_type 542 683 -22 2 1364 510 122 0 0 chr4 102158662 102158760 -53471360 + (GA)n Simple_repeat Simple_repeat 2 99 0 2 1364 228 35 0 0 chr4 102160554 102160583 -53469537 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1364 796 291 48 5 chr4 102160897 102161104 -53469016 + B3 SINE B2 1 216 0 2 1364 628 231 11 7 chr4 102162018 102162478 -53467642 + (TG)n Simple_repeat Simple_repeat 1 462 0 2 1364 570 326 110 16 chr4 102162503 102162749 -53467371 - B4A SINE B4 -16 276 8 2 1364 965 93 219 0 chr4 102162766 102162917 -53467203 + B2_Mm1t SINE B2 2 185 -8 2 1364 27 29 0 0 chr4 102163300 102163334 -53466786 + AT_rich Low_complexity Low_complexity 1 34 0 2 1364 960 211 121 0 chr4 102163351 102163541 -53466579 - B3 SINE B2 -3 213 1 2 1364 207 0 0 0 chr4 102163925 102163948 -53466172 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1364 199 294 101 14 chr4 102164611 102164680 -53465440 - MIRb SINE MIR -32 236 162 2 1364 234 91 0 0 chr4 102166210 102166243 -53463877 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 2 1364 1456 79 5 2 chr4 102166558 102167055 -53463065 + (CTGTG)n Simple_repeat Simple_repeat 1 498 0 2 1364 822 73 0 0 chr4 102167055 102167177 -53462943 + (GGCTG)n Simple_repeat Simple_repeat 2 124 0 2 1364 1155 96 1 0 chr4 102167177 102167486 -53462634 + (CTGTG)n Simple_repeat Simple_repeat 1 309 0 2 1364 203 267 0 0 chr4 102168138 102168198 -53461922 + T-rich Low_complexity Low_complexity 1 60 0 2 1364 24 0 0 0 chr4 102168376 102168400 -53461720 + AT_rich Low_complexity Low_complexity 1 24 0 2 1364 270 240 318 0 chr4 102172117 102172246 -53457874 + MIR SINE MIR 92 261 -1 2 1364 344 246 113 53 chr4 102172274 102172407 -53457713 - MIRc SINE MIR -45 223 83 2 1364 398 207 0 84 chr4 102173090 102173185 -53456935 - B1F SINE Alu -5 144 58 2 1364 198 347 73 41 chr4 102174520 102174643 -53455477 - MIRc SINE MIR -129 139 13 2 1364 238 224 20 0 chr4 102177333 102177382 -53452738 + MER5A DNA MER1_type 27 76 -113 2 1364 222 323 43 0 chr4 102177474 102177567 -53452553 + MER5A DNA MER1_type 93 189 0 2 1364 349 325 49 0 chr4 102177710 102177833 -53452287 + B4A SINE B4 81 209 -83 2 1364 198 0 0 0 chr4 102178260 102178282 -53451838 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1364 958 132 52 52 chr4 102180479 102180671 -53449449 + B2_Mm2 SINE B2 3 194 -1 2 1364 207 237 14 29 chr4 102180753 102180892 -53449228 + CT-rich Low_complexity Low_complexity 1 137 0 2 1364 324 234 0 0 chr4 102185061 102185155 -53444965 + (CGTG)n Simple_repeat Simple_repeat 2 95 0 2 1364 454 292 50 17 chr4 102186109 102186290 -53443830 + MIR SINE MIR 36 222 -40 2 1364 849 316 120 16 chr4 102186481 102186966 -53443154 + MER44B DNA MER2_type 10 544 -6 2 1364 187 300 65 32 chr4 102189257 102189381 -53440739 + MIR SINE MIR 16 143 -119 2 1364 213 121 0 0 chr4 102189519 102189552 -53440568 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1364 242 95 24 0 chr4 102189554 102189596 -53440524 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1364 382 286 45 0 chr4 102189624 102189736 -53440384 - RSINE1 SINE B4 -47 118 2 2 1364 259 263 139 20 chr4 102191630 102191731 -53438389 - PB1D10 SINE Alu 0 117 5 2 1364 6639 30 8 0 chr4 102192330 102193099 -53437021 - L1Md_F3 LINE L1 -14 6570 5796 2 1364 212 339 88 35 chr4 102193798 102193911 -53436209 + MIRc SINE MIR 21 139 -129 2 1364 194 192 0 19 chr4 102194610 102194663 -53435457 + CT-rich Low_complexity Low_complexity 3 54 0 2 1364 2375 319 50 67 chr4 102195032 102196803 -53433317 - L1_Mur3 LINE L1 -9 5871 4132 2 1364 192 273 18 0 chr4 102197008 102197063 -53433057 - L2c LINE L2 -62 3325 3270 2 1364 222 128 0 0 chr4 102197348 102197387 -53432733 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1364 187 289 31 62 chr4 102197828 102197924 -53432196 + MIRc SINE MIR 46 138 -130 2 1364 465 267 99 8 chr4 102198075 102198196 -53431924 + ID_B1 SINE B4 5 136 -88 2 1364 256 218 73 0 chr4 102198148 102198203 -53431917 + PB1D9 SINE Alu 8 66 -54 2 1364 399 100 0 0 chr4 102198203 102198273 -53431847 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 1364 273 75 0 0 chr4 102198273 102198313 -53431807 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1364 315 357 30 74 chr4 102198329 102198440 -53431680 + L1ME1 LINE L1 5615 5721 -458 2 1364 1760 52 9 9 chr4 102198440 102198671 -53431449 - L1_Mus2 LINE L1 -1 6565 6335 2 1364 315 357 30 74 chr4 102198671 102198952 -53431168 + L1ME1 LINE L1 5722 5990 -189 2 1364 276 277 134 0 chr4 102199498 102199610 -53430510 + RMER20B LTR ERVK 266 392 -235 2 1364 322 260 179 0 chr4 102201580 102201753 -53428367 + MIR SINE MIR 45 248 -14 2 1364 540 68 0 0 chr4 102205543 102205616 -53424504 + B1_Mm SINE Alu 65 137 -10 2 1364 195 100 0 0 chr4 102205815 102205845 -53424275 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 2 1364 262 279 184 0 chr4 102206390 102206526 -53423594 - MER112 DNA MER1_type -15 246 86 2 1364 271 316 125 38 chr4 102207214 102207398 -53422722 + MIRb SINE MIR 2 201 -67 2 1364 2489 191 142 33 chr4 102209676 102210282 -53419838 - RMER1B Other Other -2 1064 393 2 1364 24 32 0 0 chr4 102210294 102210325 -53419795 + AT_rich Low_complexity Low_complexity 1 31 0 2 1364 236 248 7 28 chr4 102210378 102210519 -53419601 + CT-rich Low_complexity Low_complexity 4 141 0 2 1364 226 288 110 0 chr4 102210519 102210592 -53419528 - ID4_ SINE ID 0 83 3 2 1364 302 287 160 0 chr4 102211447 102211597 -53418523 - MIRc SINE MIR -3 265 92 2 1364 510 204 260 8 chr4 102212134 102212372 -53417748 - L1MA9 LINE L1 -3 6309 6013 2 1364 360 221 117 55 chr4 102213993 102214156 -53415964 - MER53 DNA hAT -4 189 17 2 1364 327 312 68 14 chr4 102214427 102214573 -53415547 - RSINE1 SINE B4 -7 158 5 2 1364 385 245 98 0 chr4 102216256 102216358 -53413762 - ORR1D2 LTR MaLR -238 132 21 2 1364 245 248 16 64 chr4 102217545 102217670 -53412450 - L1ME3A LINE L1 -187 5986 5868 2 1364 182 207 17 0 chr4 102218744 102218802 -53411318 + CT-rich Low_complexity Low_complexity 2 60 0 2 1364 304 309 0 24 chr4 102219230 102219313 -53410807 - RSINE1 SINE B4 0 165 85 2 1364 23 33 0 0 chr4 102219777 102219807 -53410313 + AT_rich Low_complexity Low_complexity 1 30 0 2 1364 467 327 6 0 chr4 102219836 102220004 -53410116 + L1_Rod LINE L1 1719 1887 -3960 2 1364 346 250 153 0 chr4 102219998 102220122 -53409998 + L1M3 LINE L1 2769 2911 -3229 2 1364 2798 280 70 72 chr4 102220259 102221530 -53408590 + L1_Mur3 LINE L1 3399 4622 -1258 2 1364 546 16 0 0 chr4 102221530 102221593 -53408527 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1364 2798 280 70 72 chr4 102221593 102221839 -53408281 + L1_Mur3 LINE L1 4623 4912 -968 2 1364 450 53 0 0 chr4 102221863 102221920 -53408200 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2 1364 713 194 90 0 chr4 102221920 102222075 -53408045 - Lx5 LINE L1 -9 7041 6873 2 1364 27 29 0 0 chr4 102222500 102222534 -53407586 + AT_rich Low_complexity Low_complexity 1 34 0 2 1364 905 246 83 35 chr4 102222612 102223076 -53407044 + L1_Rod LINE L1 4884 5406 -480 2 1364 791 169 13 13 chr4 102223085 102223241 -53406879 + B3 SINE B2 1 156 -60 2 1364 999 294 114 2 chr4 102223244 102223674 -53406446 + L1MA5A LINE L1 5453 5930 -367 2 1364 198 278 42 0 chr4 102224414 102224486 -53405634 + MIRc SINE MIR 180 254 -14 2 1364 238 302 58 8 chr4 102224587 102224707 -53405413 + MIRb SINE MIR 37 162 -106 2 1364 290 314 88 56 chr4 102226951 102227201 -53402919 - MLT1D LTR MaLR -122 383 126 2 1364 189 0 0 0 chr4 102229564 102229585 -53400535 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 2 1364 192 111 0 0 chr4 102230121 102230157 -53399963 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1364 197 0 0 67 chr4 102230917 102230947 -53399173 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 3 1364 613 253 14 7 chr4 102231253 102231400 -53398720 - B1_Mur1 SINE Alu -1 148 1 3 1364 188 326 63 32 chr4 102231687 102231782 -53398338 + MIR SINE MIR 108 205 -57 3 1364 265 333 61 55 chr4 102231900 102232065 -53398055 + MIR SINE MIR 62 227 -35 3 1364 803 266 19 0 chr4 102232192 102232399 -53397721 - B3 SINE B2 -2 214 4 3 1364 280 297 43 21 chr4 102232512 102232605 -53397515 - MER33 DNA MER1_type -229 95 1 3 1364 515 229 60 5 chr4 102232888 102233046 -53397074 + B3A SINE B2 1 162 -54 3 1364 306 0 0 0 chr4 102233046 102233080 -53397040 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1364 341 237 109 104 chr4 102233080 102233114 -53397006 + B2_Mm2 SINE B2 166 194 -1 3 1364 305 380 24 12 chr4 102233339 102233507 -53396613 + MIRb SINE MIR 37 206 -62 3 1364 22 0 0 0 chr4 102234238 102234260 -53395860 + AT_rich Low_complexity Low_complexity 1 22 0 3 1364 199 383 115 11 chr4 102234486 102234668 -53395452 - L2c LINE L2 -186 3201 3001 3 1364 561 329 92 21 chr4 102235118 102235456 -53394664 - MLT1A1 LTR MaLR -12 396 35 3 1364 256 229 33 0 chr4 102235603 102235664 -53394456 - MLT1A1 LTR MaLR -66 342 280 3 170 231 312 15 53 chr4 102236051 102236183 -53393937 + MIRc SINE MIR 120 246 -22 3 1365 235 154 0 0 chr4 102237054 102237093 -53393027 + L2b LINE L2 3314 3352 -23 3 1365 264 111 0 0 chr4 102237102 102237147 -53392973 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 3 1365 214 267 45 58 chr4 102238320 102238440 -53391680 + MIRb SINE MIR 26 144 -124 3 1365 229 311 57 16 chr4 102240010 102240134 -53389986 + L1MD3 LINE L1 7847 7975 -20 3 1365 275 348 29 29 chr4 102240134 102240273 -53389847 + MER45B DNA Tip100 885 1023 -17 3 1365 21 0 0 0 chr4 102240969 102240990 -53389130 + AT_rich Low_complexity Low_complexity 1 21 0 3 1365 540 0 0 0 chr4 102241618 102241678 -53388442 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1365 246 105 0 0 chr4 102242434 102242472 -53387648 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 3 1365 582 150 0 0 chr4 102244264 102244384 -53385736 + (TG)n Simple_repeat Simple_repeat 1 120 0 3 1365 387 0 0 0 chr4 102245182 102245225 -53384895 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1365 225 270 31 16 chr4 102248965 102249029 -53381091 + ID4_ SINE ID 5 69 -14 3 1365 291 140 0 0 chr4 102249072 102249122 -53380998 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1365 236 328 0 0 chr4 102249138 102249202 -53380918 + ID4 SINE ID 1 64 -19 3 1365 27 29 0 0 chr4 102251499 102251533 -53378587 + AT_rich Low_complexity Low_complexity 1 34 0 3 1365 510 332 78 26 chr4 102253547 102253633 -53376487 - B4A SINE B4 -8 284 189 3 1365 396 0 0 0 chr4 102253633 102253677 -53376443 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1365 510 332 78 26 chr4 102253677 102253859 -53376261 - B4A SINE B4 -104 188 2 3 1365 23 0 0 0 chr4 102256386 102256409 -53373711 + AT_rich Low_complexity Low_complexity 1 23 0 3 1365 30 45 0 0 chr4 102257950 102257994 -53372126 + AT_rich Low_complexity Low_complexity 1 44 0 3 1365 180 182 0 0 chr4 102258405 102258449 -53371671 + C-rich Low_complexity Low_complexity 1 44 0 3 1365 24 0 0 0 chr4 102258989 102259013 -53371107 + AT_rich Low_complexity Low_complexity 1 24 0 3 1365 23 0 0 0 chr4 102262087 102262110 -53368010 + AT_rich Low_complexity Low_complexity 1 23 0 3 1365 252 0 0 0 chr4 102266292 102266320 -53363800 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1365 371 21 21 0 chr4 102266955 102267003 -53363117 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 3 1365 411 258 89 0 chr4 102268031 102268155 -53361965 - ID_B1 SINE B4 -4 220 86 3 1365 194 387 110 5 chr4 102268259 102268459 -53361661 + MIRc SINE MIR 28 248 -20 3 1365 573 193 0 0 chr4 102268757 102268907 -53361213 + (CA)n Simple_repeat Simple_repeat 2 151 0 3 1365 25 0 0 0 chr4 102269985 102270010 -53360110 + AT_rich Low_complexity Low_complexity 1 25 0 3 1365 182 319 17 33 chr4 102272531 102272651 -53357469 + L3b LINE CR1 10 127 -355 3 1365 198 0 0 0 chr4 102273441 102273463 -53356657 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 1365 215 279 0 16 chr4 102276386 102276448 -53353672 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1365 353 349 66 6 chr4 102277230 102277397 -53352723 + MIRb SINE MIR 2 178 -90 3 1365 225 132 0 0 chr4 102278428 102278466 -53351654 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1365 1140 129 0 0 chr4 102279922 102280272 -53349848 + (TTC)n Simple_repeat Simple_repeat 1 350 0 3 1365 676 229 0 27 chr4 102281437 102281584 -53348536 - B3 SINE B2 0 216 74 3 1365 419 301 54 27 chr4 102281584 102281731 -53348389 - MTE2a LTR MaLR 0 379 229 3 1365 1646 158 7 14 chr4 102281737 102282013 -53348107 - Lx2 LINE L1 -152 6845 6572 3 1365 5333 117 26 2 chr4 102281996 102283082 -53347038 - Lx2 LINE L1 -601 6396 5289 3 1365 568 212 29 42 chr4 102283064 102283249 -53346871 + Lx2 LINE L1 6822 6985 -12 3 1365 332 180 113 3 chr4 102283380 102283483 -53346637 - MTE2a LTR MaLR -314 105 1 3 1365 186 362 25 0 chr4 102283566 102283646 -53346474 + MIR SINE MIR 110 191 -71 3 1365 255 311 79 26 chr4 102284319 102284471 -53345649 - L3 LINE CR1 -801 3688 3529 3 1365 623 253 7 0 chr4 102285398 102285548 -53344572 + B3 SINE B2 1 151 -65 3 1365 261 0 0 0 chr4 102286385 102286414 -53343706 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1365 562 191 0 0 chr4 102286835 102286940 -53343180 - B1_Mus1 SINE Alu -36 112 8 3 1365 236 267 174 57 chr4 102287356 102287473 -53342647 + Lx8 LINE L1 7215 7331 -142 3 1365 252 0 0 0 chr4 102287473 102287501 -53342619 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1365 236 267 174 57 chr4 102287501 102287613 -53342507 + Lx8 LINE L1 7332 7470 -3 3 1365 266 230 65 65 chr4 102287536 102287629 -53342491 + RMER1C Other Other 1241 1333 -9 3 1365 419 0 0 19 chr4 102287707 102287759 -53342361 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1365 446 246 157 17 chr4 102287769 102287947 -53342173 - RMER15 LTR ERVL -87 488 286 3 1365 3925 126 5 5 chr4 102288206 102288813 -53341307 + MusHAL1 LINE L1 1147 1753 -959 3 1365 4801 115 36 6 chr4 102288806 102289522 -53340598 + Lx2B LINE L1 6109 6846 -154 3 1365 788 284 131 34 chr4 102290336 102290869 -53339251 - L1MEc LINE L1 -4476 1924 1340 3 1365 409 244 9 0 chr4 102291122 102291218 -53338902 + MTE2b LTR MaLR 1 100 -279 3 1365 539 247 22 29 chr4 102291244 102291442 -53338678 + MTE2b LTR MaLR 42 278 -101 3 1365 310 167 76 0 chr4 102291445 102291511 -53338609 + ORR1B1 LTR MaLR 3 73 -321 3 1365 325 161 12 24 chr4 102292162 102292245 -53337875 + CT-rich Low_complexity Low_complexity 4 85 0 3 1365 513 32 0 0 chr4 102292400 102292463 -53337657 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 1365 243 61 0 0 chr4 102292719 102292752 -53337368 + (C)n Simple_repeat Simple_repeat 1 33 0 3 1365 369 0 0 0 chr4 102293071 102293112 -53337008 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1365 478 342 7 7 chr4 102293806 102293959 -53336161 + RSINE1 SINE B4 13 165 0 3 1365 290 221 150 34 chr4 102295267 102295411 -53334709 + MIRc SINE MIR 41 205 -63 3 1365 222 250 39 0 chr4 102296129 102296181 -53333939 - ID4_ SINE ID -29 54 1 3 1365 486 0 0 0 chr4 102296313 102296367 -53333753 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1365 602 96 0 21 chr4 102298100 102298183 -53331937 + (TTTTC)n Simple_repeat Simple_repeat 4 85 0 3 1365 1173 90 0 0 chr4 102298183 102298360 -53331760 + (TCCCC)n Simple_repeat Simple_repeat 4 180 0 3 1365 602 96 0 21 chr4 102298360 102298372 -53331748 + (TTTTC)n Simple_repeat Simple_repeat 2 13 0 3 1365 1223 34 0 20 chr4 102298395 102298544 -53331576 - B1_Mm SINE Alu 0 147 2 3 1365 2135 259 52 46 chr4 102299016 102299825 -53330295 - RCHARR1 DNA MER1_type -66 908 95 3 1365 288 321 79 36 chr4 102301599 102301764 -53328356 - MER5B DNA MER1_type -1 177 6 3 1365 766 260 9 42 chr4 102301922 102302135 -53327985 + B3 SINE B2 11 216 0 3 1365 342 0 0 0 chr4 102302634 102302672 -53327448 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1365 711 0 0 0 chr4 102302741 102302820 -53327300 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 3 1365 374 333 16 0 chr4 102302821 102302947 -53327173 + GA-rich Low_complexity Low_complexity 3 130 0 3 1365 197 33 0 32 chr4 102303399 102303430 -53326690 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 3 1365 285 29 0 0 chr4 102303454 102303488 -53326632 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1365 1932 244 72 30 chr4 102305563 102306685 -53323435 - Lx6 LINE L1 -50 7410 5951 3 1365 2297 134 92 20 chr4 102306717 102307121 -53322999 - Lx2 LINE L1 0 6997 6565 3 1365 195 325 67 60 chr4 102307272 102307406 -53322714 - MIRb SINE MIR -12 256 122 3 1365 273 294 9 38 chr4 102307769 102307875 -53322245 - MIRb SINE MIR -80 188 86 3 1365 341 318 87 15 chr4 102308087 102308282 -53321838 - MER102b DNA MER1_type -49 292 84 3 1365 204 333 42 0 chr4 102310298 102310394 -53319726 - L2b LINE L2 0 3375 3276 3 1365 203 170 0 21 chr4 102310978 102311005 -53319115 + polypyrimidine Low_complexity Low_complexity 22 48 0 3 1365 1029 128 0 0 chr4 102311005 102311185 -53318935 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1365 203 170 0 21 chr4 102311185 102311205 -53318915 + polypyrimidine Low_complexity Low_complexity 2 21 0 3 1365 252 410 21 0 chr4 102312305 102312449 -53317671 + MIRb SINE MIR 83 229 -39 3 1365 773 210 14 0 chr4 102314372 102314515 -53315605 - B1_Mus2 SINE Alu 0 147 3 3 1365 185 287 77 44 chr4 102314623 102314714 -53315406 + MIRc SINE MIR 128 221 -47 3 1365 437 0 19 0 chr4 102314834 102314887 -53315233 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1365 267 31 0 0 chr4 102314887 102314918 -53315202 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1365 369 0 0 0 chr4 102315440 102315481 -53314639 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1365 686 249 89 0 chr4 102315485 102315654 -53314466 - B3A SINE B2 -14 184 1 4 1365 530 279 80 48 chr4 102315657 102315845 -53314275 - B3A SINE B2 -3 195 2 4 1365 28 0 0 0 chr4 102315903 102315931 -53314189 + AT_rich Low_complexity Low_complexity 1 28 0 4 1365 460 289 39 32 chr4 102315950 102316104 -53314016 + RSINE1 SINE B4 11 165 0 4 1365 483 225 0 0 chr4 102316104 102316242 -53313878 + (CA)n Simple_repeat Simple_repeat 1 138 0 4 1365 233 309 71 0 chr4 102316941 102317025 -53313095 + MIR SINE MIR 31 120 -88 4 1365 525 239 45 11 chr4 102317687 102317865 -53312255 + B3A SINE B2 2 185 -13 4 1365 1097 114 11 0 chr4 102318382 102318558 -53311562 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 4 1365 228 326 11 0 chr4 102318644 102318733 -53311387 + MER20 DNA MER1_type 96 185 -34 4 1365 412 18 17 17 chr4 102319345 102319403 -53310717 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 4 1365 210 71 0 0 chr4 102319403 102319431 -53310689 + (CTTA)n Simple_repeat Simple_repeat 1 28 0 4 1365 427 346 31 16 chr4 102320810 102321001 -53309119 + Lx8 LINE L1 7134 7327 -146 4 1365 249 83 0 0 chr4 102321018 102321054 -53309066 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1365 218 200 0 0 chr4 102321278 102321323 -53308797 + (TATG)n Simple_repeat Simple_repeat 2 46 0 4 1365 301 296 45 13 chr4 102321355 102321509 -53308611 - L1MA4 LINE L1 -355 5936 5778 4 1365 276 175 0 0 chr4 102321513 102321576 -53308544 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1365 1641 215 58 6 chr4 102321591 102321956 -53308164 - ORR1C2 LTR MaLR 0 384 1 4 1365 1427 274 129 49 chr4 102321957 102322703 -53307417 - L1MA4 LINE L1 -510 5787 4944 4 1365 551 241 159 34 chr4 102322703 102322879 -53307241 - B3A SINE B2 0 198 1 4 1365 1427 282 66 93 chr4 102322879 102323477 -53306643 - L1MA4 LINE L1 -1170 4973 4366 4 1365 1353 260 29 46 chr4 102323481 102323893 -53306227 - MERVL_2A-int LTR ERVL -1530 4231 3827 4 1365 2048 115 3 0 chr4 102323922 102324227 -53305893 - ORR1A2 LTR MaLR -8 319 14 4 1365 622 281 20 0 chr4 102324228 102324374 -53305746 - MERVL_2A-int LTR ERVL -2009 3752 3604 4 1365 5701 287 58 10 chr4 102324378 102326150 -53303970 - MERVL_2A-int LTR ERVL -2267 3494 1638 4 1365 3101 186 25 2 chr4 102326392 102326952 -53303168 + RMER15 LTR ERVL 1 573 -2 4 1365 578 326 122 19 chr4 102326952 102327205 -53302915 - B4 SINE B4 -10 282 2 4 1365 1340 284 40 9 chr4 102327240 102327685 -53302435 - MERVL_2A-int LTR ERVL -4405 1309 851 4 1365 281 224 43 0 chr4 102328678 102328839 -53301281 + (CA)n Simple_repeat Simple_repeat 1 168 0 4 1365 370 261 36 29 chr4 102329589 102329727 -53300393 - BC1_Mm scRNA scRNA -8 144 6 4 1365 454 254 33 17 chr4 102329746 102329866 -53300254 - B1F SINE Alu -16 133 12 4 1365 243 0 0 0 chr4 102330450 102330477 -53299643 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1365 251 279 0 0 chr4 102330903 102330982 -53299138 + A-rich Low_complexity Low_complexity 1 79 0 4 1365 678 303 154 39 chr4 102332592 102332949 -53297171 - MLT1C LTR MaLR -5 462 65 4 1365 263 370 127 18 chr4 102332997 102333162 -53296958 + MIRb SINE MIR 54 236 -32 4 1365 870 273 119 83 chr4 102333717 102334077 -53296043 - MTEa LTR MaLR -6 373 1 4 1365 4238 130 33 11 chr4 102336090 102336753 -53293367 + RLTR33 LTR ERVK 1 678 0 4 1365 981 216 0 0 chr4 102337482 102337785 -53292335 + CT-rich Low_complexity Low_complexity 1 303 0 4 1365 6366 67 18 5 chr4 102337849 102338687 -53291433 + L1_Mus3 LINE L1 5786 6634 -4 4 1365 180 0 0 0 chr4 102338962 102338982 -53291138 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1365 257 379 73 30 chr4 102339541 102339775 -53290345 + MamGypLTR2c LTR Gypsy 792 1035 -33 4 1365 211 214 0 0 chr4 102339789 102339831 -53290289 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 4 1365 903 242 9 19 chr4 102340448 102340659 -53289461 + B3 SINE B2 1 209 -7 4 1365 474 312 100 46 chr4 102341790 102342310 -53287810 - L1MD LINE L1 -3051 3095 2548 4 1365 486 0 0 0 chr4 102342588 102342642 -53287478 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1365 227 79 26 0 chr4 102342669 102342707 -53287413 + (TAA)n Simple_repeat Simple_repeat 3 41 0 4 1365 2827 118 22 0 chr4 102342869 102343286 -53286834 - Lx3A LINE L1 -8 6973 6548 4 1365 1711 204 54 74 chr4 102343296 102343837 -53286283 - Lx9 LINE L1 -1 7643 7114 4 1365 6945 178 67 17 chr4 102343953 102345761 -53284359 + Lx7 LINE L1 4281 6170 -1526 4 1365 1739 236 55 127 chr4 102345797 102346453 -53283667 - RMER1C Other Other -22 1320 712 4 1365 3853 61 0 0 chr4 102346902 102347380 -53282740 - L1_Mus2 LINE L1 -1 6565 6088 4 1365 405 195 0 11 chr4 102347518 102347606 -53282514 + Lx7 LINE L1 6161 6247 -1449 4 1365 969 107 47 0 chr4 102347667 102347817 -53282303 + ORR1B2 LTR MaLR 211 367 0 4 1365 1154 212 235 35 chr4 102347817 102348103 -53282017 + Lx7 LINE L1 7124 7421 -275 4 1365 297 0 0 0 chr4 102348103 102348136 -53281984 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1365 1154 212 235 35 chr4 102348136 102348313 -53281807 + Lx7 LINE L1 7422 7679 -17 4 1365 481 248 96 0 chr4 102348500 102348625 -53281495 + B1F SINE Alu 13 149 0 4 1365 393 312 54 34 chr4 102348656 102349005 -53281115 + L1MA5 LINE L1 5769 6124 -176 4 1365 222 268 18 0 chr4 102349620 102349676 -53280444 + L2a LINE L2 3358 3414 -12 4 1365 322 291 8 64 chr4 102351043 102351168 -53278952 + MLT1L LTR MaLR 491 608 -2 4 1365 190 370 36 18 chr4 102351194 102351304 -53278816 + MIR3 SINE MIR 83 194 -14 4 1365 329 330 39 0 chr4 102351728 102351831 -53278289 + RSINE1 SINE B4 59 165 0 4 1365 443 130 0 13 chr4 102351831 102351909 -53278211 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 4 1365 623 136 0 9 chr4 102351926 102352037 -53278083 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 4 1365 255 79 0 0 chr4 102352599 102352637 -53277483 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 4 1365 489 105 0 0 chr4 102352663 102352749 -53277371 + (CAGA)n Simple_repeat Simple_repeat 1 86 0 4 1365 206 329 80 34 chr4 102353079 102353167 -53276953 - MIR3 SINE MIR -26 182 91 4 1365 544 232 147 0 chr4 102355385 102355609 -53274511 + L1MA9 LINE L1 6004 6260 -52 4 1365 474 286 98 0 chr4 102355750 102355883 -53274237 - B4A SINE B4 -144 148 3 4 1365 1172 55 0 20 chr4 102356541 102356690 -53273430 - B1_Mm SINE Alu 0 147 2 4 1365 1958 143 119 0 chr4 102356989 102357332 -53272788 - ORR1C2 LTR MaLR 0 384 1 4 1365 513 0 0 0 chr4 102357609 102357666 -53272454 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1365 200 312 62 42 chr4 102358459 102358592 -53271528 + MIRb SINE MIR 37 174 -94 4 1365 619 261 6 43 chr4 102358909 102359073 -53271047 + RSINE1 SINE B4 3 160 -5 4 1365 25 0 0 0 chr4 102359073 102359098 -53271022 + AT_rich Low_complexity Low_complexity 1 25 0 4 1365 875 297 25 57 chr4 102359575 102359889 -53270231 - ORR1E LTR MaLR -55 304 1 4 1365 23 0 0 0 chr4 102359950 102359973 -53270147 + AT_rich Low_complexity Low_complexity 1 23 0 4 1365 957 125 223 0 chr4 102360228 102360412 -53269708 + URR1B DNA MER1_type 1 225 0 4 1365 316 268 223 23 chr4 102360453 102360583 -53269537 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1365 327 227 0 0 chr4 102360719 102360816 -53269304 + (CA)n Simple_repeat Simple_repeat 1 97 0 4 1365 1209 36 0 0 chr4 102361969 102362108 -53268012 + B1_Mus1 SINE Alu 2 140 -8 4 1365 200 35 35 0 chr4 102362108 102362137 -53267983 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1365 248 328 192 0 chr4 102363100 102363225 -53266895 + MIRb SINE MIR 13 161 -107 4 1365 2712 173 55 0 chr4 102363227 102363754 -53266366 + Lx4B LINE L1 5956 6511 -547 4 1365 1168 134 167 9 chr4 102364898 102365131 -53264989 - ORR1C1 LTR MaLR -108 270 1 4 1365 225 0 0 0 chr4 102365441 102365466 -53264654 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1365 333 0 0 0 chr4 102365596 102365633 -53264487 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1365 673 125 17 0 chr4 102365637 102365757 -53264363 + (TA)n Simple_repeat Simple_repeat 1 122 0 4 1365 1497 305 134 34 chr4 102365768 102366289 -53263831 - Lx8 LINE L1 -660 6813 6197 4 1365 245 29 0 29 chr4 102366289 102366324 -53263796 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4 1365 1497 287 90 13 chr4 102366324 102367181 -53262939 - Lx8 LINE L1 -1277 6196 5309 4 1366 446 174 0 21 chr4 102367696 102367790 -53262330 - Lx8 LINE L1 -619 5228 5137 4 1366 273 172 94 0 chr4 102367825 102367889 -53262231 - PB1D10 SINE Alu -10 107 38 4 1366 390 211 93 21 chr4 102368089 102368186 -53261934 + B1_Mur1 SINE Alu 46 149 0 4 1366 225 0 0 0 chr4 102368186 102368211 -53261909 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1366 6347 36 0 0 chr4 102368276 102369027 -53261093 - L1Md_T LINE L1 0 6582 5832 4 1366 5331 23 0 0 chr4 102369028 102369677 -53260443 + L1_Mm LINE L1 4668 5316 -567 4 1366 2387 110 3 62 chr4 102370632 102371020 -53259100 + RLTR8 LTR ERVK 1 365 0 4 1366 423 0 0 0 chr4 102371293 102371340 -53258780 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1366 302 253 11 54 chr4 102371343 102371435 -53258685 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1366 422 323 148 92 chr4 102371506 102371987 -53258133 - MLT2B3 LTR ERVL -41 513 6 4 1366 259 280 161 0 chr4 102371995 102372088 -53258032 + MIRb SINE MIR 87 194 -74 4 1366 38825 15 2 6 chr4 102372232 102378773 -53251347 - L1Md_A LINE L1 0 6582 70 4 1366 3208 148 7 57 chr4 102379910 102380504 -53249616 - RLTR12A LTR ERVK -4 564 1 4 1366 22 0 0 0 chr4 102380756 102380778 -53249342 + AT_rich Low_complexity Low_complexity 1 22 0 4 1366 460 381 84 50 chr4 102381166 102381663 -53248457 + LTR78 LTR ERV1 92 605 -699 4 1366 254 51 0 49 chr4 102381892 102381933 -53248187 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1366 227 281 43 33 chr4 102382416 102382508 -53247612 - MLT1J2 LTR MaLR -17 431 335 4 1366 376 305 209 14 chr4 102382532 102382832 -53247288 + MLT1A0 LTR MaLR 1 358 -7 4 1366 525 32 0 0 chr4 102384974 102385037 -53245083 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1366 809 253 102 10 chr4 102385143 102385438 -53244682 + RMER1B Other Other 55 376 -690 5 1366 2540 215 91 8 chr4 102385448 102386040 -53244080 + RMER1B Other Other 162 802 -264 5 1366 1984 198 66 26 chr4 102386042 102386629 -53243491 + MYSERV16_I-int LTR ERVK 1714 2324 -2 5 1366 484 282 132 18 chr4 102386631 102386858 -53243262 + RLTR16 LTR ERVK 1 253 -252 5 1366 540 0 0 0 chr4 102387026 102387086 -53243034 + (TTTC)n Simple_repeat Simple_repeat 4 63 0 5 1366 1043 84 25 59 chr4 102387094 102387296 -53242824 - Lx LINE L1 -20 6634 6440 5 1366 746 134 23 8 chr4 102387452 102387580 -53242540 + RLTR22_Mur LTR ERVK 1719 1848 0 5 1366 484 248 91 0 chr4 102387583 102387704 -53242416 - MTE2b LTR MaLR -247 132 1 5 1366 1445 196 102 23 chr4 102387838 102388182 -53241938 + ORR1D1 LTR MaLR 2 372 -2 5 1366 787 253 77 0 chr4 102388224 102388418 -53241702 + B3 SINE B2 3 211 -5 5 1366 404 261 35 35 chr4 102388444 102388615 -53241505 + Charlie2b DNA MER1_type 2064 2234 -548 5 1366 204 338 0 24 chr4 102389714 102389796 -53240324 + MIR SINE MIR 164 243 -19 5 1366 2188 165 102 3 chr4 102390566 102390949 -53239171 - MTC LTR MaLR 0 421 1 5 1366 392 310 14 14 chr4 102390972 102391119 -53239001 + MLT1B LTR MaLR 20 166 -224 5 1366 373 304 71 103 chr4 102391479 102391703 -53238417 + MLT1B LTR MaLR 154 370 -20 5 1366 1930 278 35 25 chr4 102392325 102392931 -53237189 + Lx8 LINE L1 6859 7470 -3 5 1366 24 0 0 0 chr4 102392935 102392959 -53237161 + AT_rich Low_complexity Low_complexity 1 24 0 5 1366 1263 97 17 11 chr4 102393075 102393253 -53236867 + B2_Mm2 SINE B2 3 181 -14 5 1366 209 108 27 0 chr4 102393883 102393920 -53236200 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1366 486 75 0 0 chr4 102393949 102394016 -53236104 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1366 441 320 16 0 chr4 102394113 102394235 -53235885 + B4A SINE B4 3 126 -166 5 1366 339 258 20 20 chr4 102394249 102394348 -53235772 + B4A SINE B4 194 292 0 5 1366 194 210 0 31 chr4 102394395 102394459 -53235661 + GA-rich Low_complexity Low_complexity 3 64 0 5 1366 506 261 0 0 chr4 102394808 102394919 -53235201 + PB1D10 SINE Alu 2 112 -5 5 1366 340 26 0 0 chr4 102395145 102395184 -53234936 - L1Md_F3 LINE L1 -406 6176 6138 5 1366 3383 42 7 2 chr4 102395184 102395591 -53234529 + L1Md_F3 LINE L1 6175 6583 -1 5 1366 209 318 111 9 chr4 102396915 102397023 -53233097 + MIR SINE MIR 32 150 -112 5 1366 247 336 62 8 chr4 102397297 102397426 -53232694 - MER45A DNA Tip100 -37 141 6 5 1366 251 311 13 13 chr4 102398178 102398253 -53231867 + ID_B1 SINE B4 81 155 -69 5 1366 300 289 0 13 chr4 102398189 102398266 -53231854 + PB1D10 SINE Alu 12 87 -30 5 1366 23 54 0 0 chr4 102398418 102398455 -53231665 + AT_rich Low_complexity Low_complexity 1 37 0 5 1366 436 207 42 24 chr4 102398523 102398647 -53231473 - MTD LTR MaLR 0 419 296 5 1366 1824 308 55 18 chr4 102398760 102399601 -53230519 + L1MA6 LINE L1 5412 6283 -17 5 1366 195 42 0 0 chr4 102399798 102399822 -53230298 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1366 894 158 0 0 chr4 102400187 102400351 -53229769 + (CA)n Simple_repeat Simple_repeat 2 165 0 5 1366 1170 112 0 0 chr4 102400368 102400546 -53229574 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1366 199 383 71 0 chr4 102400701 102400842 -53229278 - MIRb SINE MIR -58 210 60 5 1366 242 338 69 94 chr4 102401298 102401458 -53228662 - L2b LINE L2 -15 3360 3205 5 1366 413 313 56 17 chr4 102401643 102401674 -53228446 - B3A SINE B2 0 198 166 5 1366 423 0 0 0 chr4 102401674 102401721 -53228399 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1366 413 313 56 17 chr4 102401721 102401868 -53228252 - B3A SINE B2 -33 165 13 5 1366 819 239 49 0 chr4 102402268 102402511 -53227609 - L1M2 LINE L1 -758 5385 5131 5 1366 1230 254 75 53 chr4 102402540 102403034 -53227086 - L1_Mur3 LINE L1 -1598 4282 3778 5 1366 425 244 122 0 chr4 102403039 102403081 -53227039 - L1MD LINE L1 -2464 3682 3638 5 1366 180 0 0 0 chr4 102403081 102403101 -53227019 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1366 425 246 124 0 chr4 102403101 102403229 -53226891 - L1MD LINE L1 -2509 3637 3467 5 1366 478 305 67 38 chr4 102403448 102403752 -53226368 + ERVL-E-int LTR ERVL 4252 4583 -1131 5 1366 27 49 0 0 chr4 102404196 102404237 -53225883 + AT_rich Low_complexity Low_complexity 1 41 0 5 1366 2872 229 116 27 chr4 102404286 102404915 -53225205 - RMER1B Other Other -51 1015 318 5 1366 366 23 0 0 chr4 102404915 102404958 -53225162 + (CAGCC)n Simple_repeat Simple_repeat 1 43 0 5 1366 2872 272 45 11 chr4 102404958 102405337 -53224783 - RMER1B Other Other -713 353 84 5 1366 718 149 0 14 chr4 102406336 102406447 -53223673 + polypyrimidine Low_complexity Low_complexity 34 143 0 5 1366 1368 67 0 0 chr4 102406447 102406627 -53223493 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1366 718 149 0 14 chr4 102406627 102406658 -53223462 + polypyrimidine Low_complexity Low_complexity 4 33 0 5 1366 456 259 123 0 chr4 102408129 102408291 -53221829 + MLT1A1 LTR MaLR 219 400 -8 5 1366 26 30 0 0 chr4 102408644 102408677 -53221443 + AT_rich Low_complexity Low_complexity 1 33 0 5 1366 1778 214 16 0 chr4 102408811 102409185 -53220935 + RLTR14 LTR ERV1 3 382 0 5 1366 940 249 69 82 chr4 102409920 102410351 -53219769 + RMER1A Other Other 3 520 -546 5 1366 2860 219 247 7 chr4 102410351 102411168 -53218952 + RMER1A Other Other 1 1013 -17 5 1366 620 181 0 8 chr4 102411171 102411299 -53218821 + GA-rich Low_complexity Low_complexity 2 128 0 5 1366 3784 81 31 0 chr4 102411337 102411853 -53218267 + L1_Mur2 LINE L1 4932 5463 -414 5 1366 5945 128 51 23 chr4 102411853 102412841 -53217279 + Lx4A LINE L1 6044 7058 0 5 1366 418 306 74 8 chr4 102412945 102413302 -53216818 + MLT2B1 LTR ERVL 70 549 -18 5 1366 216 241 11 44 chr4 102414133 102414224 -53215896 + (AGGTG)n Simple_repeat Simple_repeat 1 88 0 5 1366 201 189 19 0 chr4 102414771 102414824 -53215296 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1366 969 142 7 0 chr4 102414856 102415004 -53215116 - B1_Mur4 SINE Alu 0 150 2 5 1366 340 258 68 12 chr4 102415263 102415424 -53214696 - MER33 DNA MER1_type -104 220 51 5 1366 421 311 112 0 chr4 102415607 102415813 -53214307 + MLT1A0 LTR MaLR 118 346 -19 5 1366 360 0 0 0 chr4 102416368 102416408 -53213712 + (TTG)n Simple_repeat Simple_repeat 2 41 0 5 1366 889 228 70 98 chr4 102416505 102416662 -53213458 + MTE2a LTR MaLR 3 148 -231 5 1366 459 0 0 0 chr4 102416662 102416713 -53213407 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1366 889 233 63 96 chr4 102416713 102416939 -53213181 + MTE2a LTR MaLR 149 384 -12 5 1366 341 192 0 13 chr4 102417446 102417525 -53212595 - Lx7 LINE L1 -9 7687 7610 5 1366 38965 12 2 7 chr4 102417612 102422812 -53207308 + L1Md_A LINE L1 422 5586 -297 5 1366 9050 11 0 0 chr4 102422812 102423808 -53206312 + L1Md_A LINE L1 5587 6582 0 5 1366 6628 215 77 13 chr4 102424278 102425801 -53204319 - Lx7 LINE L1 -406 7290 5671 5 1366 221 233 17 0 chr4 102426654 102426714 -53203406 + GA-rich Low_complexity Low_complexity 2 62 0 5 1366 258 32 0 0 chr4 102426985 102427016 -53203104 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1366 396 0 0 0 chr4 102427466 102427510 -53202610 + (TATG)n Simple_repeat Simple_repeat 2 45 0 5 1366 502 191 80 26 chr4 102427510 102427623 -53202497 - PB1D9 SINE Alu -1 119 1 5 1366 336 48 0 0 chr4 102427758 102427800 -53202320 + (GAAAA)n Simple_repeat Simple_repeat 1 42 0 5 1366 1076 124 0 6 chr4 102427805 102427984 -53202136 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1366 1484 290 113 54 chr4 102428557 102429235 -53200885 + L1MA5 LINE L1 5323 6034 -266 5 1366 378 0 0 0 chr4 102429235 102429277 -53200843 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1366 1484 290 113 54 chr4 102429277 102429397 -53200723 + L1MA5 LINE L1 6035 6162 -138 5 1366 378 0 0 0 chr4 102429397 102429439 -53200681 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1366 1484 290 113 54 chr4 102429439 102429539 -53200581 + L1MA5 LINE L1 6163 6275 -25 5 1366 872 287 138 6 chr4 102429605 102429952 -53200168 - L1M1 LINE L1 -544 5756 5364 5 1366 1297 175 37 0 chr4 102430570 102430787 -53199333 - URR1B DNA MER1_type 0 225 1 5 1366 450 0 0 0 chr4 102430964 102431014 -53199106 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1366 212 86 0 28 chr4 102431227 102431263 -53198857 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5 1366 183 186 0 0 chr4 102432563 102432606 -53197514 + A-rich Low_complexity Low_complexity 1 43 0 5 1366 209 302 0 0 chr4 102434255 102434308 -53195812 + C-rich Low_complexity Low_complexity 1 53 0 5 1366 25 0 0 0 chr4 102436873 102436898 -53193222 + AT_rich Low_complexity Low_complexity 1 25 0 5 1366 231 288 164 75 chr4 102437355 102437636 -53192484 + MamRep1161 DNA TcMar 295 600 -357 5 1366 212 390 13 0 chr4 102438287 102438364 -53191756 + L2b LINE L2 3260 3337 -38 5 1366 6885 99 16 11 chr4 102438644 102439653 -53190467 - L1_Mus4 LINE L1 -8 6628 5622 5 1366 246 329 72 18 chr4 102439936 102440103 -53190017 + MIR3 SINE MIR 21 196 -12 5 1366 764 268 39 54 chr4 102440377 102440593 -53189527 + Lx8 LINE L1 6889 7107 -366 5 1366 1913 175 67 0 chr4 102440593 102440953 -53189167 + ORR1C2 LTR MaLR 1 384 0 5 1366 764 268 39 54 chr4 102440953 102440996 -53189124 + Lx8 LINE L1 7108 7144 -329 5 1366 977 263 33 70 chr4 102441282 102441613 -53188507 + Lx8 LINE L1 7153 7471 -2 5 1366 293 268 128 14 chr4 102441884 102442027 -53188093 - MIRc SINE MIR -74 194 36 5 1366 223 242 113 0 chr4 102442467 102442529 -53187591 - MIR3 SINE MIR -50 158 90 5 1366 181 246 33 0 chr4 102442785 102442846 -53187274 + MIRc SINE MIR 74 136 -132 5 1366 983 147 52 1 chr4 102444169 102444367 -53185753 + URR1B DNA MER1_type 2 225 0 5 1366 366 300 8 16 chr4 102445172 102445294 -53184826 + MIRb SINE MIR 142 262 -6 5 1366 247 311 81 8 chr4 102445475 102445598 -53184522 + MIR SINE MIR 54 185 -77 5 1366 324 0 0 0 chr4 102445620 102445656 -53184464 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 1366 492 287 145 30 chr4 102446737 102446999 -53183121 + B4 SINE B4 1 292 0 5 1366 220 326 94 26 chr4 102447394 102447586 -53182534 - L2 LINE L2 -445 2974 2770 5 1366 225 155 0 0 chr4 102447601 102447659 -53182461 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 5 1366 1276 219 40 37 chr4 102448526 102448853 -53181267 - Lx6 LINE L1 -26 7434 7107 5 1366 958 87 22 0 chr4 102449542 102449680 -53180440 + B1_Mus1 SINE Alu 7 147 -1 5 1366 713 132 8 0 chr4 102449704 102449825 -53180295 + (GGAA)n Simple_repeat Simple_repeat 4 125 0 5 1366 2906 243 99 82 chr4 102450912 102451908 -53178212 - RMER1B Other Other -4 1062 50 6 1366 574 130 22 0 chr4 102452243 102452335 -53177785 - B3A SINE B2 -104 94 1 6 1366 189 330 53 9 chr4 102452725 102452838 -53177282 - MIRb SINE MIR -33 235 118 6 1366 263 316 65 45 chr4 102453268 102453467 -53176653 + MIR SINE MIR 34 236 -26 6 1366 308 24 24 0 chr4 102454682 102454723 -53175397 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1366 1134 193 28 0 chr4 102454809 102455021 -53175099 + URR1A DNA MER1_type 1 218 -8 6 1366 451 255 103 31 chr4 102455435 102455629 -53174491 - MIR SINE MIR -57 211 2 6 1366 1264 28 0 0 chr4 102457116 102457261 -53172859 + B1_Mus2 SINE Alu 3 147 0 6 1366 381 324 0 9 chr4 102457792 102457901 -53172219 + MER45R DNA Tip100 3 110 -1471 6 1366 283 105 35 0 chr4 102458252 102458309 -53171811 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1366 526 250 76 23 chr4 102458322 102458494 -53171626 - B4 SINE B4 -6 286 106 6 1366 329 338 49 37 chr4 102458891 102459054 -53171066 - MER5A1 DNA MER1_type -1 165 1 6 1366 320 194 41 14 chr4 102460271 102460344 -53169776 + Lx8 LINE L1 6881 6955 -518 6 1366 243 164 0 0 chr4 102460360 102460421 -53169699 + (CCA)n Simple_repeat Simple_repeat 2 62 0 6 1366 659 293 65 25 chr4 102460421 102460666 -53169454 + Lx8 LINE L1 6951 7205 -268 6 1366 258 354 10 0 chr4 102460686 102460782 -53169338 + RMER15 LTR ERVL 371 467 -108 6 1366 664 200 5 5 chr4 102460782 102460991 -53169129 + (CA)n Simple_repeat Simple_repeat 1 209 0 6 1366 1240 202 106 7 chr4 102461126 102461400 -53168720 - Lx5 LINE L1 -1 7049 6749 6 1366 417 173 12 47 chr4 102461538 102461623 -53168497 + B1_Mur4 SINE Alu 3 84 -66 6 1366 1237 244 93 91 chr4 102461628 102461976 -53168144 - L1MA6 LINE L1 -323 5977 5600 6 1366 207 0 0 0 chr4 102461976 102461999 -53168121 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1366 1237 244 93 91 chr4 102461999 102462209 -53167911 - L1MA6 LINE L1 -701 5599 5418 6 1366 182 289 88 32 chr4 102462232 102462357 -53167763 + MIR SINE MIR 123 254 -8 6 1366 185 261 0 0 chr4 102462684 102462730 -53167390 - MIR SINE MIR -122 140 95 6 1366 952 235 34 0 chr4 102462913 102463117 -53167003 + B3 SINE B2 3 213 -3 6 1366 315 0 0 0 chr4 102463322 102463357 -53166763 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1366 279 0 0 0 chr4 102463357 102463387 -53166733 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1366 297 0 0 0 chr4 102463480 102463513 -53166607 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1366 2899 177 21 30 chr4 102465994 102466560 -53163560 - RLTR31_Mm LTR ERVK 0 561 1 6 1366 216 0 0 0 chr4 102466562 102466586 -53163534 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1366 400 267 19 0 chr4 102467250 102467355 -53162765 - RSINE1 SINE B4 -24 141 35 6 1366 392 261 99 21 chr4 102467742 102467883 -53162237 - RSINE1 SINE B4 -10 155 4 6 1366 1156 83 58 35 chr4 102469366 102469540 -53160580 + B2_Mm1t SINE B2 2 179 -14 6 1366 320 127 0 35 chr4 102469569 102469626 -53160494 + B2_Mm2 SINE B2 47 101 -94 6 1366 385 207 27 0 chr4 102469676 102469787 -53160333 + GA-rich Low_complexity Low_complexity 4 117 0 6 1366 2220 248 109 43 chr4 102469979 102470929 -53159191 - L1MC LINE L1 -1958 4188 3176 6 1366 274 345 8 8 chr4 102471257 102471374 -53158746 - L2a LINE L2 -8 3418 3302 6 1366 279 296 45 0 chr4 102471517 102471532 -53158588 - ID_B1 SINE B4 -132 92 1 6 1366 300 301 0 0 chr4 102471532 102471605 -53158515 - ID2 SINE ID -10 73 1 6 1366 525 314 47 11 chr4 102471933 102472123 -53157997 + B3 SINE B2 1 197 -19 6 1366 358 138 157 14 chr4 102472125 102472272 -53157848 + RMER17C LTR ERVK 100 267 -143 6 1366 488 282 149 0 chr4 102474107 102474295 -53155825 + L1MB8 LINE L1 5764 5979 -199 6 1366 283 225 14 40 chr4 102474931 102475005 -53155115 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 6 1366 244 143 0 0 chr4 102475710 102475752 -53154368 + RMER15 LTR ERVL 422 463 -112 6 1366 346 270 53 18 chr4 102475792 102475905 -53154215 + PB1D10 SINE Alu 1 117 0 6 1366 261 0 0 0 chr4 102478156 102478185 -53151935 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1366 510 257 18 0 chr4 102478417 102478526 -53151594 + PB1D7 SINE Alu 5 115 -5 6 1366 261 118 0 0 chr4 102478788 102478839 -53151281 + (A)n Simple_repeat Simple_repeat 1 51 0 6 1366 541 186 16 0 chr4 102479050 102479179 -53150941 + CT-rich Low_complexity Low_complexity 2 132 0 6 1366 42 20 0 0 chr4 102479899 102479948 -53150172 + AT_rich Low_complexity Low_complexity 1 49 0 6 1366 294 29 0 0 chr4 102480239 102480274 -53149846 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1366 217 352 55 7 chr4 102480564 102480710 -53149410 + L2a LINE L2 3147 3299 -127 6 1366 198 187 0 0 chr4 102480862 102480911 -53149209 + L2a LINE L2 3324 3411 -15 6 1366 1183 177 237 12 chr4 102480916 102481254 -53148866 - MTD LTR MaLR 0 419 6 6 1366 282 248 54 90 chr4 102482768 102482879 -53147241 + Charlie12 DNA MER1_type 9 115 -2758 6 1366 394 163 60 20 chr4 102482785 102482885 -53147235 - RMER30 DNA MER1_type -19 183 80 6 1366 621 266 115 20 chr4 102482916 102483169 -53146951 - B4 SINE B4 -12 280 4 6 1366 562 275 45 149 chr4 102483271 102483735 -53146385 + MTD LTR MaLR 1 398 -21 6 1366 275 265 0 14 chr4 102485649 102485718 -53144402 + ID4 SINE ID 6 73 -10 6 1366 324 158 0 0 chr4 102485731 102485788 -53144332 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1366 209 146 0 47 chr4 102485877 102485920 -53144200 + (TATG)n Simple_repeat Simple_repeat 3 43 0 6 1366 1605 277 134 22 chr4 102486892 102487445 -53142675 - L1MDa LINE L1 -3550 2987 2323 6 1366 501 97 0 0 chr4 102487445 102487517 -53142603 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1366 1605 291 98 81 chr4 102487517 102488264 -53141856 - L1MDa LINE L1 -4311 2322 1606 6 1366 1073 86 0 0 chr4 102488264 102488404 -53141716 + B1_Mus1 SINE Alu 2 141 -7 6 1366 1605 291 98 81 chr4 102488404 102488678 -53141442 - L1MDa LINE L1 -5028 1605 1335 6 1366 213 39 0 0 chr4 102489435 102489461 -53140659 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1366 1261 292 50 25 chr4 102489817 102490256 -53139864 - Lx8 LINE L1 -9 7464 7015 6 1366 1013 155 193 0 chr4 102490466 102490647 -53139473 + B3 SINE B2 1 216 0 6 1366 639 239 67 47 chr4 102491358 102491551 -53138569 - B3A SINE B2 0 198 2 6 1366 504 117 0 0 chr4 102492007 102492084 -53138036 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1366 942 269 108 22 chr4 102492904 102493311 -53136809 - L1MC1 LINE L1 -236 6097 5656 6 1366 284 312 106 21 chr4 102494624 102494765 -53135355 + B4A SINE B4 1 153 -139 6 1366 236 131 21 21 chr4 102494780 102494827 -53135293 + B4A SINE B4 196 242 -50 6 1366 491 292 185 0 chr4 102495053 102495231 -53134889 + B3 SINE B2 3 213 -3 6 1366 1715 271 78 58 chr4 102495411 102496089 -53134031 - Lx8 LINE L1 -3 7470 6779 6 1366 217 0 61 0 chr4 102496912 102496945 -53133175 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1366 420 143 0 0 chr4 102497159 102497229 -53132891 + (GGGGA)n Simple_repeat Simple_repeat 4 73 0 6 1366 813 183 21 0 chr4 102497460 102497602 -53132518 - B1_Mur3 SINE Alu -3 146 2 6 1366 207 0 0 0 chr4 102498031 102498054 -53132066 + (T)n Simple_repeat Simple_repeat 1 23 0 6 170 441 0 0 0 chr4 102498268 102498317 -53131803 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1367 253 254 17 0 chr4 102498344 102498403 -53131717 - B4 SINE B4 -18 274 215 6 1367 287 269 153 21 chr4 102498414 102498558 -53131562 - B3 SINE B2 -10 206 44 6 1367 351 0 0 0 chr4 102498573 102498612 -53131508 + (TTG)n Simple_repeat Simple_repeat 2 40 0 6 1367 673 180 16 8 chr4 102498612 102498741 -53131379 - B1_Mur1 SINE Alu -11 138 9 6 1367 534 211 103 55 chr4 102498740 102498905 -53131215 - B4A SINE B4 -63 229 57 6 1367 598 66 33 0 chr4 102499716 102499807 -53130313 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 6 1367 679 220 44 5 chr4 102499815 102500000 -53130120 - Lx5 LINE L1 0 7058 6839 6 1367 2423 177 38 0 chr4 102500000 102500419 -53129701 - Lx5 LINE L1 -212 6838 6404 1 1367 198 0 0 0 chr4 102500977 102500999 -53129121 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1367 793 257 26 49 chr4 102501838 102502186 -53127934 - RLTR15 LTR ERVK -16 343 4 3 1367 196 296 62 0 chr4 102502201 102502282 -53127838 + MIRm SINE MIR 71 156 -120 4 1367 282 56 0 0 chr4 102502314 102502350 -53127770 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 5 1367 700 265 41 116 chr4 102502689 102503077 -53127043 + ORR1E LTR MaLR 1 359 0 6 1367 347 194 0 53 chr4 102503567 102503643 -53126477 + ID4 SINE ID 2 73 -10 7 1367 456 184 40 10 chr4 102505925 102506024 -53124096 + B1F1 SINE Alu 6 107 -42 8 1367 326 289 16 47 chr4 102506024 102506052 -53124068 + ID_B1 SINE B4 87 209 -15 9 1367 27 0 0 0 chr4 102506819 102506846 -53123274 + AT_rich Low_complexity Low_complexity 1 27 0 1 1367 309 51 0 0 chr4 102507834 102507873 -53122247 + (TCC)n Simple_repeat Simple_repeat 3 41 0 1 1367 609 14 0 0 chr4 102507873 102507943 -53122177 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1367 653 285 29 43 chr4 102508361 102508570 -53121550 + MER2 DNA MER2_type 140 345 0 1 1367 555 311 105 45 chr4 102508647 102508980 -53121140 - ORR1E LTR MaLR -6 353 1 1 1367 492 230 56 56 chr4 102509003 102509146 -53120974 - B1_Mur1 SINE Alu -6 143 1 1 1367 1353 157 4 13 chr4 102509231 102509457 -53120663 + URR1A DNA MER1_type 2 225 -1 1 1367 405 0 0 0 chr4 102511924 102511969 -53118151 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 1 1367 28 79 0 0 chr4 102512392 102512455 -53117665 + AT_rich Low_complexity Low_complexity 1 63 0 1 1367 363 175 32 0 chr4 102514381 102514444 -53115676 - B4 SINE B4 -208 84 20 1 1367 457 156 0 72 chr4 102514786 102514883 -53115237 - B1_Mur3 SINE Alu 0 149 60 2 1367 1601 211 152 0 chr4 102514883 102515331 -53114789 + Lx9 LINE L1 6563 7078 -566 2 1367 3409 59 28 9 chr4 102515477 102515905 -53114215 + RLTR10C LTR ERVK 1 436 0 2 1367 537 221 0 0 chr4 102515932 102516027 -53114093 + B1_Mur3 SINE Alu 3 97 -52 2 1367 391 293 142 8 chr4 102517887 102518021 -53112099 - B4A SINE B4 -128 164 13 2 1367 243 288 28 70 chr4 102518204 102518346 -53111774 + RMER30 DNA MER1_type 16 151 -51 2 1367 441 251 67 37 chr4 102518462 102518719 -53111401 - L1MB5 LINE L1 -15 6159 5901 2 1367 2933 139 42 21 chr4 102518728 102519046 -53111074 - RLTR20A LTR ERVK 0 541 226 2 1367 2107 114 89 6 chr4 102519046 102519406 -53110714 - Lx LINE L1 -4 6650 6261 2 1367 2933 139 42 21 chr4 102519406 102519617 -53110503 - RLTR20A LTR ERVK -316 225 3 2 1367 459 221 82 0 chr4 102519627 102519749 -53110371 - L1MB5 LINE L1 -280 5894 5763 2 1367 9203 3 0 0 chr4 102519822 102521178 -53108942 - L1Md_A LINE L1 0 6582 5227 2 1367 930 268 71 4 chr4 102521354 102521620 -53108500 + B4A SINE B4 2 285 -7 3 1367 246 116 0 0 chr4 102521654 102521697 -53108423 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1367 935 156 44 50 chr4 102521725 102521907 -53108213 - B2_Mm2 SINE B2 -14 181 1 3 1367 665 245 7 7 chr4 102522368 102522512 -53107608 - RSINE1 SINE B4 -19 146 3 3 1367 258 296 91 0 chr4 102522676 102522764 -53107356 - RSINE1 SINE B4 -63 102 7 3 1367 354 98 0 0 chr4 102524045 102524096 -53106024 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1367 261 0 0 0 chr4 102524096 102524124 -53105996 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1367 273 293 0 47 chr4 102525146 102525232 -53104888 - ID4_ SINE ID -1 82 1 3 1367 189 0 0 0 chr4 102525455 102525476 -53104644 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1367 222 208 0 0 chr4 102527518 102527571 -53102549 + GA-rich Low_complexity Low_complexity 3 55 0 3 1367 276 167 14 27 chr4 102529594 102529668 -53100452 + CT-rich Low_complexity Low_complexity 2 74 0 4 1367 959 122 0 0 chr4 102529704 102529843 -53100277 - B1_Mur4 SINE Alu -6 144 6 4 1367 493 241 32 90 chr4 102529843 102529855 -53100265 - B4 SINE B4 -68 220 79 4 1367 1859 45 79 4 chr4 102530727 102530992 -53099128 - MTA_Mm LTR MaLR 0 396 112 4 1367 310 335 68 16 chr4 102531028 102531219 -53098901 + L1M4c LINE L1 1530 1730 -4654 4 1367 192 182 0 0 chr4 102531279 102531323 -53098797 + (ATG)n Simple_repeat Simple_repeat 2 45 0 4 1367 745 208 197 0 chr4 102531503 102531681 -53098439 + B3 SINE B2 2 214 -2 4 1367 638 216 190 53 chr4 102531840 102532131 -53097989 - ORR1D2 LTR MaLR -29 341 85 4 1367 454 183 238 7 chr4 102532132 102532275 -53097845 - ORR1D1 LTR MaLR -198 176 1 4 1367 690 251 5 52 chr4 102532849 102533042 -53097078 + B3A SINE B2 1 184 -14 4 1367 21 0 0 0 chr4 102533057 102533078 -53097042 + AT_rich Low_complexity Low_complexity 1 21 0 5 1367 272 172 0 17 chr4 102533493 102533552 -53096568 + CT-rich Low_complexity Low_complexity 2 59 0 5 1367 26 0 0 0 chr4 102533708 102533734 -53096386 + AT_rich Low_complexity Low_complexity 1 26 0 5 1367 32 0 0 0 chr4 102534231 102534263 -53095857 + AT_rich Low_complexity Low_complexity 1 32 0 5 1367 21 0 0 0 chr4 102535014 102535035 -53095085 + AT_rich Low_complexity Low_complexity 1 21 0 5 1367 341 326 37 15 chr4 102536846 102536980 -53093140 - MER3 DNA MER1_type -72 137 1 5 1367 1184 175 22 52 chr4 102537169 102537398 -53092722 - URR1A DNA MER1_type 0 226 5 5 1367 866 168 10 3 chr4 102537870 102538175 -53091945 + (TG)n Simple_repeat Simple_repeat 1 307 0 5 1367 186 133 0 0 chr4 102539444 102539474 -53090646 + (GAA)n Simple_repeat Simple_repeat 2 31 0 5 1367 387 0 0 0 chr4 102542890 102542933 -53087187 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1367 696 169 0 0 chr4 102543593 102543723 -53086397 + (TA)n Simple_repeat Simple_repeat 1 130 0 6 1367 324 0 0 0 chr4 102545226 102545262 -53084858 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1367 1096 203 43 10 chr4 102545597 102545806 -53084314 - B3 SINE B2 0 216 1 6 1367 35 41 0 0 chr4 102546098 102546147 -53083973 + AT_rich Low_complexity Low_complexity 1 49 0 6 1367 775 327 60 8 chr4 102546408 102546772 -53083348 - L1MA4 LINE L1 -418 5882 5500 6 1367 782 304 192 35 chr4 102547009 102547415 -53082705 - Lx8 LINE L1 -165 7308 6839 6 1367 413 356 80 25 chr4 102547513 102547924 -53082196 - MLT1J LTR MaLR -56 392 2 6 1367 549 194 96 8 chr4 102548141 102548266 -53081854 - B1_Mur1 SINE Alu -2 147 12 6 1367 2199 93 65 20 chr4 102548266 102548617 -53081503 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1367 56203 30 6 6 chr4 102548621 102555088 -53075032 - IAPEz-int LTR ERVK -3 6478 8 6 1367 2199 93 65 20 chr4 102555088 102555439 -53074681 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1367 2714 57 0 3 chr4 102556137 102556471 -53073649 - L1_Mus4 LINE L1 -255 6381 6049 6 1367 2001 66 7 4 chr4 102556472 102556733 -53073387 + L1_Mus4 LINE L1 6362 6623 -13 6 1367 1216 55 0 0 chr4 102556733 102556878 -53073242 + B1_Mus2 SINE Alu 3 147 0 7 1367 2001 66 7 4 chr4 102556878 102556889 -53073231 + L1_Mus4 LINE L1 6624 6634 -2 6 1367 1971 135 51 3 chr4 102557253 102557565 -53072555 - ORR1A2 LTR MaLR 0 327 1 7 1367 185 0 0 39 chr4 102557735 102557761 -53072359 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1367 188 260 38 38 chr4 102558034 102558114 -53072006 + MIRc SINE MIR 77 156 -112 7 1367 186 43 0 0 chr4 102559202 102559225 -53070895 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1367 279 241 70 94 chr4 102559244 102559434 -53070686 + MIRb SINE MIR 37 213 -49 7 1367 343 324 97 37 chr4 102559592 102559809 -53070311 - MIR SINE MIR -42 220 2 7 1367 214 317 52 14 chr4 102560604 102560756 -53069364 + MIR SINE MIR 81 245 -23 7 1367 231 314 100 83 chr4 102562607 102562917 -53067203 - MT2A LTR ERVL -176 357 50 7 1367 192 77 0 0 chr4 102562917 102562943 -53067177 + (TGG)n Simple_repeat Simple_repeat 3 28 0 7 1367 231 314 100 83 chr4 102562943 102562983 -53067137 - MT2A LTR ERVL -484 49 2 7 1367 1783 108 46 67 chr4 102563953 102564281 -53065839 + ORR1A4 LTR MaLR 1 321 -8 8 1367 5047 75 1 9 chr4 102564380 102565040 -53065080 - L1Md_F2 LINE L1 -12 6570 5916 8 1367 442 20 0 0 chr4 102565040 102565090 -53065030 + L1Md_F2 LINE L1 5884 5933 -633 8 1367 2228 84 17 78 chr4 102565637 102565985 -53064135 + ORR1A2 LTR MaLR 1 327 0 8 1367 264 59 0 0 chr4 102566299 102566333 -53063787 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 8 1367 3570 81 15 2 chr4 102566599 102567068 -53063052 - MT2C_Mm LTR ERVL 0 475 1 8 1367 296 286 59 22 chr4 102568777 102568913 -53061207 - RLTR19-int LTR ERVK -25 5381 5241 8 1367 306 0 0 0 chr4 102569338 102569372 -53060748 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1367 3152 143 102 4 chr4 102569475 102570023 -53060097 - RLTR19-int LTR ERVK -1760 4377 3776 8 1367 1070 210 136 26 chr4 102570019 102570327 -53059793 - RLTR19-int LTR ERVK -1532 3874 3533 8 1367 50 83 0 0 chr4 102570331 102570451 -53059669 + AT_rich Low_complexity Low_complexity 1 120 0 8 1367 23 54 0 0 chr4 102570509 102570546 -53059574 + AT_rich Low_complexity Low_complexity 1 37 0 8 1367 1194 68 0 0 chr4 102573424 102573572 -53056548 - B1_Mus1 SINE Alu 0 148 1 8 1367 400 73 351 44 chr4 102573572 102573677 -53056443 - B2_Mm2 SINE B2 -8 187 47 9 1367 1294 97 11 0 chr4 102573719 102573895 -53056225 - B2_Mm1t SINE B2 -14 179 2 9 1367 622 259 14 7 chr4 102574155 102574299 -53055821 + RSINE1 SINE B4 21 165 0 9 1367 22 0 0 0 chr4 102574747 102574769 -53055351 + AT_rich Low_complexity Low_complexity 1 22 0 9 1367 315 0 0 0 chr4 102574867 102574902 -53055218 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1367 349 192 90 0 chr4 102575459 102575537 -53054583 + B4 SINE B4 2 86 -206 9 1367 243 88 0 0 chr4 102578443 102578477 -53051643 + (TGG)n Simple_repeat Simple_repeat 3 36 0 9 1367 266 262 141 59 chr4 102578531 102578701 -53051419 + B2_Mm2 SINE B2 3 186 -9 9 1367 549 305 8 0 chr4 102579029 102579160 -53050960 + B1F1 SINE Alu 6 137 -12 9 1367 416 82 34 34 chr4 102579161 102579249 -53050871 + GA-rich Low_complexity Low_complexity 1 88 0 9 1367 267 190 0 0 chr4 102579465 102579523 -53050597 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1367 477 0 0 0 chr4 102581203 102581256 -53048864 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1367 1338 226 169 3 chr4 102583216 102583571 -53046549 - MTD LTR MaLR -5 414 1 1 1367 290 286 28 37 chr4 102583596 102583705 -53046415 + PB1D10 SINE Alu 2 109 -8 1 1367 739 278 8 1 chr4 102584854 102585040 -53045080 + B3A SINE B2 21 214 -2 1 1367 832 184 0 0 chr4 102585103 102585244 -53044876 + B1_Mur3 SINE Alu 3 143 -6 1 1367 254 258 61 14 chr4 102586607 102586716 -53043404 - MIRc SINE MIR -79 197 70 1 1367 1388 157 0 0 chr4 102586915 102587125 -53042995 + B3 SINE B2 2 211 -5 1 1367 1423 141 96 0 chr4 102588000 102588270 -53041850 + Lx2A1 LINE L1 6713 7008 0 1 1367 826 221 71 5 chr4 102589487 102589683 -53040437 + B3 SINE B2 3 211 -5 1 1367 249 86 17 33 chr4 102589740 102589800 -53040320 + (TTATA)n Simple_repeat Simple_repeat 2 60 0 1 1367 1127 51 0 7 chr4 102590315 102590454 -53039666 + B1_Mus1 SINE Alu 3 140 -8 1 1367 185 0 40 0 chr4 102590454 102590479 -53039641 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1367 2052 184 21 46 chr4 102590805 102591237 -53038883 - MTC LTR MaLR 0 421 1 1 1367 225 0 0 0 chr4 102591727 102591752 -53038368 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1367 217 180 40 0 chr4 102592950 102593000 -53037120 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1367 324 0 0 0 chr4 102596601 102596637 -53033483 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1367 1437 210 127 14 chr4 102596658 102597020 -53033100 - MTC LTR MaLR -13 408 6 1 1367 26 0 0 0 chr4 102597718 102597744 -53032376 + AT_rich Low_complexity Low_complexity 1 26 0 1 1367 828 146 0 0 chr4 102600550 102600687 -53029433 + B2_Mm2 SINE B2 2 138 -57 1 1367 236 286 169 0 chr4 102601173 102601250 -53028870 + RSINE1 SINE B4 1 90 -75 1 1367 183 129 0 0 chr4 102602140 102602171 -53027949 + (C)n Simple_repeat Simple_repeat 1 31 0 1 1367 322 273 88 26 chr4 102602290 102602403 -53027717 - Helitron3Na_Mam RC Helitron 0 486 367 1 1367 337 254 15 126 chr4 102602413 102602548 -53027572 - Helitron3Na_Mam RC Helitron -284 202 83 1 1367 229 211 181 14 chr4 102603683 102603755 -53026365 + PB1D7 SINE Alu 37 120 0 1 1367 25 51 0 0 chr4 102603935 102603974 -53026146 + AT_rich Low_complexity Low_complexity 1 39 0 1 1367 402 221 31 10 chr4 102604809 102604905 -53025215 + B3 SINE B2 102 199 -17 1 1367 310 282 54 113 chr4 102604935 102605103 -53025017 + B3A SINE B2 25 182 -16 1 1367 201 247 0 0 chr4 102605129 102605210 -53024910 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1367 240 322 0 0 chr4 102607626 102607685 -53022435 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1367 1755 207 93 65 chr4 102608373 102608941 -53021179 - RLTR31A_Mm LTR ERVK 0 584 1 1 1367 1480 215 99 53 chr4 102608941 102609487 -53020633 - MYSERV16_I-int LTR ERVK 0 2326 1756 1 1367 1843 194 110 31 chr4 102609554 102610363 -53019757 - RMER3D-int LTR ERVK -964 1878 1006 1 1367 519 198 36 9 chr4 102610391 102610503 -53019617 - RMER3D-int LTR ERVK -2238 604 490 1 1367 320 161 10 79 chr4 102610551 102610652 -53019468 - RMER3D-int LTR ERVK -2069 773 680 1 1367 704 252 173 0 chr4 102612001 102612215 -53017905 + B4A SINE B4 32 282 -10 1 1367 186 167 0 0 chr4 102612250 102612286 -53017834 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1367 203 364 40 7 chr4 102613212 102613364 -53016756 - L2a LINE L2 -87 3339 3183 1 1367 217 338 14 0 chr4 102613956 102614030 -53016090 - ID4_ SINE ID -1 82 8 1 1367 292 261 43 0 chr4 102616532 102616624 -53013496 + 5S rRNA rRNA 5 100 -21 1 1367 291 345 17 8 chr4 102617754 102617874 -53012246 - L2b LINE L2 -2 3373 3253 1 1367 423 0 0 0 chr4 102618265 102618312 -53011808 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1367 516 93 0 0 chr4 102620060 102620135 -53009985 + (TCC)n Simple_repeat Simple_repeat 1 75 0 1 1367 2514 44 9 3 chr4 102621204 102621522 -53008598 - L1Md_F3 LINE L1 -4 6580 6261 1 1367 845 120 22 15 chr4 102622505 102622640 -53007480 + RLTR31B_Mm LTR ERVK 422 557 0 1 1367 37 39 0 0 chr4 102622764 102622815 -53007305 + AT_rich Low_complexity Low_complexity 1 51 0 1 1367 1305 128 29 80 chr4 102623376 102623614 -53006506 - URR1A DNA MER1_type 0 226 1 1 1367 273 29 0 0 chr4 102624385 102624419 -53005701 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 1 1367 500 218 26 35 chr4 102624846 102624960 -53005160 - PB1D10 SINE Alu 0 117 5 1 1367 731 300 36 21 chr4 102625694 102625973 -53004147 + B4A SINE B4 2 284 -8 1 1367 396 0 0 0 chr4 102626022 102626066 -53004054 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1367 1238 54 0 0 chr4 102626098 102626245 -53003875 - B1_Mm SINE Alu 0 147 1 1 1367 195 42 0 0 chr4 102626535 102626559 -53003561 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1 1367 619 167 257 40 chr4 102627125 102627300 -53002820 + B3 SINE B2 1 213 -3 1 1367 360 359 84 20 chr4 102627927 102628129 -53001991 + MIRb SINE MIR 23 237 -31 1 1367 492 265 45 0 chr4 102628973 102629105 -53001015 - B1_Mur1 SINE Alu 0 149 12 1 1368 208 218 18 18 chr4 102630095 102630151 -52999969 + L2b LINE L2 2734 2789 -630 1 1368 225 258 15 15 chr4 102630510 102630577 -52999543 + C-rich Low_complexity Low_complexity 5 71 0 1 1368 199 292 94 62 chr4 102630622 102630750 -52999370 + L2b LINE L2 3238 3369 -6 1 1368 1261 41 0 0 chr4 102631317 102631464 -52998656 - B1_Mus2 SINE Alu 0 147 1 1 1368 322 292 61 17 chr4 102631807 102631922 -52998198 - LTR41 LTR ERVL -623 145 26 1 1368 290 302 52 132 chr4 102631935 102631986 -52998134 + L1ME1 LINE L1 4616 4666 -1480 1 1368 1582 148 96 34 chr4 102631986 102632372 -52997748 - RMER17C LTR ERVK 0 410 1 1 1368 290 302 52 132 chr4 102632372 102632416 -52997704 + L1ME1 LINE L1 4667 4685 -1461 1 1368 849 226 9 63 chr4 102632416 102632638 -52997482 + B3 SINE B2 1 210 -6 1 1368 346 302 52 132 chr4 102632638 102633079 -52997041 + L1ME1 LINE L1 4686 5110 -1036 1 1368 280 293 130 76 chr4 102633592 102634039 -52996081 + L1ME1 LINE L1 5578 6048 -131 1 1368 584 258 26 0 chr4 102634462 102634613 -52995507 + RSINE1 SINE B4 3 157 -8 1 1368 180 0 0 0 chr4 102636338 102636358 -52993762 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1368 1502 124 0 22 chr4 102636368 102636598 -52993522 + URR1B DNA MER1_type 1 225 0 1 1368 280 179 12 162 chr4 102637548 102637628 -52992492 + B3A SINE B2 1 68 -130 1 1368 394 284 27 73 chr4 102638220 102638456 -52991664 - MIRb SINE MIR -24 238 8 1 1368 405 0 0 0 chr4 102639360 102639405 -52990715 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1368 946 194 21 10 chr4 102639721 102639914 -52990206 + B2_Mm2 SINE B2 1 195 0 1 1368 2275 34 0 0 chr4 102641267 102641532 -52988588 + L1Md_T LINE L1 6318 6582 0 1 1368 252 0 0 0 chr4 102641651 102641679 -52988441 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1368 334 290 65 52 chr4 102641708 102641861 -52988259 + RSINE1 SINE B4 11 165 0 1 1368 516 269 7 69 chr4 102641920 102642064 -52988056 + RSINE1 SINE B4 3 137 -28 1 1368 266 125 21 0 chr4 102642105 102642153 -52987967 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1 1368 23 0 0 0 chr4 102643055 102643078 -52987042 + AT_rich Low_complexity Low_complexity 1 23 0 1 1368 215 103 0 25 chr4 102646758 102646798 -52983322 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1368 396 0 0 0 chr4 102647527 102647571 -52982549 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1368 199 136 34 0 chr4 102648412 102648471 -52981649 + T-rich Low_complexity Low_complexity 1 61 0 1 1368 31 88 0 0 chr4 102648483 102648563 -52981557 + AT_rich Low_complexity Low_complexity 1 80 0 1 1368 236 50 75 0 chr4 102650220 102650260 -52979860 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1368 740 215 185 42 chr4 102650271 102650460 -52979660 + B3 SINE B2 1 216 0 1 1368 189 196 0 0 chr4 102650968 102651019 -52979101 + G-rich Low_complexity Low_complexity 1 51 0 1 1368 843 10 0 0 chr4 102653421 102653517 -52976603 + (TTC)n Simple_repeat Simple_repeat 3 98 0 1 1368 1445 174 46 63 chr4 102653621 102654036 -52976084 - RMER16 LTR ERVK 0 533 1 1 1368 21 0 0 0 chr4 102654086 102654107 -52976013 + AT_rich Low_complexity Low_complexity 1 21 0 1 1368 244 169 185 0 chr4 102654272 102654337 -52975783 - ID4_ SINE ID -5 78 2 1 1368 398 270 30 38 chr4 102654497 102654628 -52975492 - RSINE1 SINE B4 -25 140 11 1 1368 471 78 0 0 chr4 102654900 102654964 -52975156 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1368 252 149 0 0 chr4 102655405 102655452 -52974668 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1368 25 0 0 0 chr4 102655743 102655768 -52974352 + AT_rich Low_complexity Low_complexity 1 25 0 1 1368 478 349 58 21 chr4 102656090 102656418 -52973702 + MER58B DNA MER1_type 1 340 -1 1 1368 192 246 65 16 chr4 102656425 102656487 -52973633 - MIRc SINE MIR -97 171 107 1 1368 327 105 0 0 chr4 102657397 102657454 -52972666 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1368 217 0 61 0 chr4 102657609 102657642 -52972478 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1368 36 0 0 0 chr4 102658453 102658489 -52971631 + AT_rich Low_complexity Low_complexity 1 36 0 1 1368 22 0 0 0 chr4 102659620 102659642 -52970478 + AT_rich Low_complexity Low_complexity 1 22 0 1 1368 474 252 16 8 chr4 102660030 102660154 -52969966 + B1F2 SINE Alu 15 139 -10 1 1368 806 210 100 25 chr4 102660463 102660663 -52969457 + B3 SINE B2 1 215 -1 1 1368 1052 84 35 0 chr4 102660814 102660956 -52969164 - B1_Mus1 SINE Alu -1 147 1 1 1368 1271 241 63 9 chr4 102661083 102661430 -52968690 - ORR1D2 LTR MaLR -4 366 1 1 1368 392 227 148 104 chr4 102661489 102661624 -52968496 + B3A SINE B2 3 154 -44 1 1368 180 111 0 0 chr4 102661624 102661651 -52968469 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1 1368 243 227 148 104 chr4 102661651 102661697 -52968423 + B2_Mm2 SINE B2 137 191 -4 1 1368 264 278 229 75 chr4 102662703 102662956 -52967164 + B4A SINE B4 1 292 0 2 1368 383 304 0 0 chr4 102662956 102663068 -52967052 + (CA)n Simple_repeat Simple_repeat 1 112 0 2 1368 207 282 155 0 chr4 102663531 102663634 -52966486 + MIRc SINE MIR 87 205 -63 2 1368 312 223 59 0 chr4 102664109 102664191 -52965929 + B1_Mur4 SINE Alu 1 90 -60 2 1368 270 148 0 0 chr4 102664254 102664308 -52965812 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1368 342 0 0 0 chr4 102664308 102664346 -52965774 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1368 414 0 0 0 chr4 102665500 102665546 -52964574 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1368 225 0 0 0 chr4 102665608 102665633 -52964487 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1368 180 0 0 0 chr4 102666336 102666356 -52963764 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1368 818 162 29 0 chr4 102666356 102666492 -52963628 - B1_Mur4 SINE Alu -10 140 1 2 1368 1443 75 37 0 chr4 102667548 102667736 -52962384 - B2_Mm2 SINE B2 0 195 1 2 1368 433 238 202 25 chr4 102667739 102667781 -52962339 - MTEa LTR MaLR -12 367 314 2 1368 468 0 0 0 chr4 102667781 102667833 -52962287 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 2 1368 433 241 201 25 chr4 102667833 102668018 -52962102 - MTEa LTR MaLR -65 314 102 2 1368 327 276 19 0 chr4 102668066 102668171 -52961949 - ID_B1 SINE B4 -19 205 99 2 1368 206 88 0 56 chr4 102668240 102668276 -52961844 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1368 1434 116 40 0 chr4 102669202 102669426 -52960694 - Lx2 LINE L1 0 6997 6765 2 1368 7161 102 37 1 chr4 102669416 102670625 -52959495 - Lx2 LINE L1 -353 6644 5400 2 1368 6871 79 34 7 chr4 102670628 102672265 -52957855 - L1VL4 LINE L1 -1667 1892 212 2 1368 339 304 158 7 chr4 102672469 102672608 -52957512 - Lx8 LINE L1 -141 7332 7173 2 1368 253 225 110 24 chr4 102672828 102672910 -52957210 - B1F SINE Alu 0 149 61 2 1368 340 327 156 26 chr4 102673006 102673358 -52956762 + LTR33 LTR ERVL 62 459 -56 2 1368 224 324 63 28 chr4 102673666 102673809 -52956311 + MIRb SINE MIR 118 265 -3 2 1368 485 233 119 82 chr4 102673974 102674133 -52955987 - RSINE1 SINE B4 0 165 1 2 1368 1273 34 0 0 chr4 102674431 102674579 -52955541 - B1_Mus1 SINE Alu 0 148 1 2 1368 505 254 150 15 chr4 102675444 102675635 -52954485 - B3A SINE B2 -2 214 14 2 1368 183 114 0 0 chr4 102675653 102675688 -52954432 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1368 446 269 155 60 chr4 102675744 102676009 -52954111 - B4 SINE B4 0 292 3 2 1368 313 176 27 0 chr4 102680050 102680124 -52949996 + CT-rich Low_complexity Low_complexity 3 78 0 2 1368 759 234 101 5 chr4 102680898 102681087 -52949033 + B3 SINE B2 2 208 -8 2 1368 540 292 8 0 chr4 102681128 102681258 -52948862 + ID_B1 SINE B4 81 211 -13 2 1368 504 176 0 0 chr4 102681259 102681361 -52948759 + (TAA)n Simple_repeat Simple_repeat 1 102 0 2 1368 388 296 0 0 chr4 102681438 102681546 -52948574 + PB1D10 SINE Alu 7 114 -3 2 1368 378 205 51 0 chr4 102681547 102681625 -52948495 + ID4 SINE ID 2 83 0 2 1368 2916 129 100 2 chr4 102681659 102682140 -52947980 - RLTR11A LTR ERVK 0 528 1 2 1368 347 105 18 0 chr4 102683053 102683110 -52947010 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1368 863 167 236 0 chr4 102683116 102683290 -52946830 + B3 SINE B2 1 215 -1 2 1368 25 90 0 0 chr4 102683823 102683890 -52946230 + AT_rich Low_complexity Low_complexity 1 67 0 2 1368 516 250 104 0 chr4 102683933 102684077 -52946043 + RSINE1 SINE B4 3 161 -4 2 1368 195 42 0 0 chr4 102684109 102684133 -52945987 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1368 294 252 187 0 chr4 102684141 102684339 -52945781 - Charlie1a DNA MER1_type -44 1411 1177 2 1368 939 161 0 0 chr4 102684906 102685086 -52945034 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1368 1317 277 52 37 chr4 102685103 102685472 -52944648 + Lx8 LINE L1 6795 7170 -303 2 1368 1260 45 16 22 chr4 102685472 102685655 -52944465 + L1_Mus3 LINE L1 6457 6638 0 2 1368 1317 277 52 37 chr4 102685655 102685693 -52944427 + Lx8 LINE L1 7171 7208 -265 2 1368 32 67 0 0 chr4 102685831 102685891 -52944229 + AT_rich Low_complexity Low_complexity 1 60 0 2 1368 502 293 14 60 chr4 102686531 102686749 -52943371 - Lx8 LINE L1 -6 7467 7260 2 1368 672 206 267 12 chr4 102686940 102687112 -52943008 - B3 SINE B2 0 216 1 2 1368 5191 47 0 0 chr4 102688061 102688704 -52941416 + L1_Mus1 LINE L1 5946 6567 0 2 1368 276 30 0 0 chr4 102688900 102688933 -52941187 + (TGG)n Simple_repeat Simple_repeat 1 33 0 2 1368 475 258 134 35 chr4 102689055 102689256 -52940864 + RMER21B LTR ERV1 347 567 -275 2 1368 477 0 0 0 chr4 102689304 102689357 -52940763 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1368 523 214 10 0 chr4 102689372 102689475 -52940645 - B1_Mur2 SINE Alu -45 104 1 2 1368 830 228 9 112 chr4 102690208 102690440 -52939680 - B3 SINE B2 -8 208 1 2 1368 38206 22 1 7 chr4 102691429 102696823 -52933297 + L1Md_T LINE L1 229 5586 -297 2 1368 8515 37 0 0 chr4 102696823 102697819 -52932301 + L1Md_T LINE L1 5587 6582 0 2 1368 1126 120 0 17 chr4 102697819 102697997 -52932123 + L1_Mur2 LINE L1 4002 4176 -1701 2 1368 1666 21 0 11 chr4 102698752 102698943 -52931177 + B2_Mm1a SINE B2 2 190 -3 2 1368 2029 45 0 4 chr4 102699826 102700074 -52930046 - L1_Mus1 LINE L1 0 6567 6321 2 1368 878 292 73 34 chr4 102700409 102700764 -52929356 + MTD LTR MaLR 37 405 -14 2 1368 2446 266 35 20 chr4 102701204 102701949 -52928171 + Lx8 LINE L1 6028 6774 -699 2 1368 1089 229 69 11 chr4 102701941 102702202 -52927918 + Lx8 LINE L1 7187 7462 -11 2 1368 25 51 0 0 chr4 102702210 102702249 -52927871 + AT_rich Low_complexity Low_complexity 1 39 0 2 1368 570 194 7 79 chr4 102702273 102702413 -52927707 + B3 SINE B2 1 130 -86 2 1368 1132 270 95 26 chr4 102702445 102702898 -52927222 + RLTR11A2 LTR ERVK 1 484 -43 2 1368 635 322 37 67 chr4 102703233 102703609 -52926511 - MLT1A0 LTR MaLR 0 365 1 2 1368 23 0 0 0 chr4 102703687 102703710 -52926410 + AT_rich Low_complexity Low_complexity 1 23 0 2 1368 298 219 515 19 chr4 102704297 102704437 -52925683 - B3 SINE B2 -6 210 1 2 1368 444 299 57 35 chr4 102705568 102705797 -52924323 + RLTR16 LTR ERVK 1 234 -271 2 1368 1123 95 0 7 chr4 102705903 102706052 -52924068 + B1_Mus1 SINE Alu 1 148 0 2 1368 425 300 58 32 chr4 102706568 102706723 -52923397 + RSINE1 SINE B4 3 161 -4 2 1368 473 296 71 10 chr4 102706826 102707024 -52923096 + L1M2 LINE L1 5530 5739 -552 2 1368 225 259 35 47 chr4 102707400 102707485 -52922635 + PB1D10 SINE Alu 10 93 -24 2 1368 309 109 0 0 chr4 102708208 102708254 -52921866 + (CACG)n Simple_repeat Simple_repeat 1 46 0 2 1368 22 35 0 0 chr4 102708591 102708620 -52921500 + AT_rich Low_complexity Low_complexity 1 29 0 2 1368 249 296 14 27 chr4 102709230 102709303 -52920817 + PB1D10 SINE Alu 42 113 -4 2 1368 455 226 19 10 chr4 102709691 102709794 -52920326 + PB1D10 SINE Alu 13 116 -1 2 1368 202 229 0 0 chr4 102710621 102710669 -52919451 + A-rich Low_complexity Low_complexity 2 49 0 2 1368 207 182 0 0 chr4 102711076 102711120 -52919000 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1368 24 0 0 0 chr4 102712882 102712906 -52917214 + AT_rich Low_complexity Low_complexity 1 24 0 2 1368 554 244 76 70 chr4 102713656 102713828 -52916292 + B4A SINE B4 3 175 -117 2 1368 614 37 0 12 chr4 102713876 102713958 -52916162 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1368 504 264 0 24 chr4 102714040 102714164 -52915956 - RSINE1 SINE B4 -2 163 43 2 1368 2248 57 3 3 chr4 102714380 102714662 -52915458 - L1_Mus2 LINE L1 0 6566 6285 2 1368 270 136 0 0 chr4 102715050 102715094 -52915026 + (CATG)n Simple_repeat Simple_repeat 3 46 0 2 1368 270 289 12 12 chr4 102715107 102715191 -52914929 - B1F SINE Alu -12 137 54 2 1368 1820 164 3 0 chr4 102715322 102715632 -52914488 + RLTR10E LTR ERVK 1 311 0 2 1368 525 228 90 48 chr4 102715736 102715925 -52914195 - B3A SINE B2 0 198 2 2 1368 39 92 0 0 chr4 102716104 102716213 -52913907 + AT_rich Low_complexity Low_complexity 1 109 0 2 1368 6668 64 29 6 chr4 102716728 102717592 -52912528 - L1_Mus4 LINE L1 -6 6630 5747 2 1368 11547 137 5 1 chr4 102717592 102719386 -52910734 + L1_Mus4 LINE L1 3935 5736 -147 2 1368 459 310 78 36 chr4 102719602 102719937 -52910183 - L2a LINE L2 -4 3422 3074 2 1368 23 54 0 0 chr4 102720288 102720325 -52909795 + AT_rich Low_complexity Low_complexity 1 37 0 2 1368 232 183 15 77 chr4 102721225 102721290 -52908830 + MLT2D LTR ERVL 2 62 -402 2 1368 533 179 8 0 chr4 102721317 102721440 -52908680 + CT-rich Low_complexity Low_complexity 1 124 0 2 1368 288 276 57 9 chr4 102721443 102721549 -52908571 + MLT2D LTR ERVL 92 202 -212 2 1368 306 0 0 0 chr4 102723320 102723354 -52906766 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 2 1368 1125 51 0 7 chr4 102723354 102723493 -52906627 - B1_Mus2 SINE Alu -9 138 1 2 1368 30 0 0 0 chr4 102723749 102723779 -52906341 + AT_rich Low_complexity Low_complexity 1 30 0 2 1368 623 212 87 7 chr4 102723987 102724125 -52905995 + B1_Mur4 SINE Alu 2 150 0 2 1368 244 307 50 7 chr4 102724523 102724664 -52905456 + L1M2 LINE L1 2223 2369 -3774 2 1368 334 204 21 0 chr4 102724735 102724828 -52905292 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1368 1972 276 56 7 chr4 102724956 102725493 -52904627 + MTE2b-int LTR MaLR 1011 1573 -7 2 1368 774 322 73 7 chr4 102725499 102725771 -52904349 + MTE2b LTR MaLR 1 290 -89 2 1368 3406 30 2 5 chr4 102725775 102726172 -52903948 - MTA_Mm LTR MaLR 0 396 1 2 1368 667 265 25 96 chr4 102726250 102726359 -52903761 + L1_Mur3 LINE L1 3232 3334 -2546 2 1368 702 154 92 0 chr4 102726359 102726489 -52903631 + B1_Mur4 SINE Alu 3 144 -6 2 1368 378 0 0 0 chr4 102726491 102726533 -52903587 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1368 667 265 25 96 chr4 102726533 102726676 -52903444 + L1_Mur3 LINE L1 3335 3467 -2413 2 1368 269 26 0 26 chr4 102726676 102726715 -52903405 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1368 667 265 25 96 chr4 102726715 102726780 -52903340 + L1_Mur3 LINE L1 3468 3530 -2350 2 1368 1134 286 64 39 chr4 102726785 102727144 -52902976 + L1_Mur3 LINE L1 3828 4203 -1677 2 1368 4040 37 2 0 chr4 102727144 102727629 -52902491 + L1Md_F2 LINE L1 6097 6582 0 3 1368 1134 286 64 39 chr4 102727629 102727785 -52902335 + L1_Mur3 LINE L1 4204 4356 -1524 2 1368 347 230 85 14 chr4 102727780 102727921 -52902199 + L1_Mur3 LINE L1 3160 3310 -2570 3 1368 429 20 0 0 chr4 102728128 102728178 -52901942 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1368 394 320 46 38 chr4 102728212 102728450 -52901670 + L1M5 LINE L1 2992 3235 -2911 3 1368 276 299 63 42 chr4 102728568 102728854 -52901266 + L1M5 LINE L1 3244 3535 -2611 3 1368 335 259 77 74 chr4 102728924 102729238 -52900882 + L1M5 LINE L1 3672 3988 -2158 3 1368 280 330 29 0 chr4 102729678 102729781 -52900339 - MER20 DNA MER1_type -60 159 54 3 1368 21 36 0 0 chr4 102729916 102729944 -52900176 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 310 312 108 0 chr4 102729952 102730045 -52900075 - RSINE1 SINE B4 -28 137 35 3 1368 2111 163 31 3 chr4 102730075 102730426 -52899694 + ORR1B1 LTR MaLR 26 386 -8 3 1368 369 0 0 0 chr4 102730429 102730470 -52899650 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1368 210 339 172 81 chr4 102730470 102730679 -52899441 - B4 SINE B4 -63 229 2 3 1368 1838 234 77 20 chr4 102730908 102731045 -52899075 + Lx2B LINE L1 6406 6558 -442 3 1368 3444 39 0 128 chr4 102731045 102731545 -52898575 + RLTR10C LTR ERVK 1 436 0 3 1368 1838 234 77 20 chr4 102731545 102731952 -52898168 + Lx2B LINE L1 6559 6981 -19 3 1368 474 136 0 0 chr4 102732359 102732440 -52897680 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1368 23 0 0 0 chr4 102732663 102732686 -52897434 + AT_rich Low_complexity Low_complexity 1 23 0 3 1368 3993 201 67 55 chr4 102732820 102733899 -52896221 - RLTR22_Mur LTR ERVK -169 1679 588 3 1368 741 250 46 113 chr4 102736185 102736424 -52893696 + B4 SINE B4 2 224 -68 3 1368 1192 68 0 0 chr4 102736429 102736575 -52893545 + B1_Mm SINE Alu 1 146 -1 3 1368 219 318 0 0 chr4 102736662 102736725 -52893395 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1368 1466 49 16 0 chr4 102736789 102736972 -52893148 - B2_Mm2 SINE B2 -9 186 1 3 1368 230 394 28 7 chr4 102737328 102737471 -52892649 + MARNA DNA Mariner 114 259 -327 3 1368 1034 142 141 10 chr4 102737486 102737685 -52892435 - URR1B DNA MER1_type 0 225 1 3 1368 239 315 34 0 chr4 102737721 102737810 -52892310 + MIR SINE MIR 31 122 -140 3 1368 511 270 45 17 chr4 102737836 102738013 -52892107 + B3A SINE B2 1 182 -16 3 1368 315 0 0 0 chr4 102738465 102738500 -52891620 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1368 392 324 13 54 chr4 102738539 102738699 -52891421 + RSINE1 SINE B4 2 150 -142 3 1368 256 280 92 13 chr4 102738710 102738786 -52891334 + RSINE1 SINE B4 84 165 0 3 1368 626 313 34 14 chr4 102739412 102739610 -52890510 + B4 SINE B4 4 200 -92 3 1368 360 64 0 0 chr4 102739710 102739757 -52890363 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1368 189 0 0 0 chr4 102739757 102739777 -52890343 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1368 1026 218 136 29 chr4 102740133 102740503 -52889617 - MT2A LTR ERVL -72 461 1 3 1368 797 243 189 31 chr4 102740503 102740826 -52889294 + MTEb LTR MaLR 5 378 -1 3 1368 328 291 111 13 chr4 102740841 102740994 -52889126 - ERVL-E-int LTR ERVL -3267 2400 2233 3 1368 517 277 51 0 chr4 102741043 102741238 -52888882 - L1MC1 LINE L1 -191 6142 5938 3 1368 824 219 47 24 chr4 102741309 102741520 -52888600 - B3 SINE B2 0 216 1 3 1368 364 274 36 0 chr4 102741641 102741725 -52888395 - B1F2 SINE Alu -58 91 5 3 1368 748 272 137 4 chr4 102741731 102742294 -52887826 - L1MC1 LINE L1 -841 5305 4668 3 1368 218 111 0 0 chr4 102742501 102742537 -52887583 + RSINE1 SINE B4 13 48 -117 3 1368 222 148 0 0 chr4 102742564 102742618 -52887502 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 3 1368 216 67 0 0 chr4 102742785 102742815 -52887305 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1368 519 82 0 0 chr4 102742815 102742888 -52887232 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1368 236 236 109 0 chr4 102742888 102742943 -52887177 - RMER15 LTR ERVL -112 463 403 3 1368 316 310 43 2 chr4 102743201 102743336 -52886784 + L1M5 LINE L1 5474 5615 -625 3 1368 312 313 126 29 chr4 102743354 102743561 -52886559 + L1MD2 LINE L1 5669 5895 -464 3 1368 511 296 71 13 chr4 102743619 102743773 -52886347 - RSINE1 SINE B4 0 165 3 3 1368 29 0 0 0 chr4 102745516 102745545 -52884575 + AT_rich Low_complexity Low_complexity 1 29 0 3 1368 1043 285 28 18 chr4 102745739 102746025 -52884095 + B4 SINE B4 1 289 -3 3 1368 387 294 94 81 chr4 102746106 102746435 -52883685 - MLT1A1 LTR MaLR -40 368 1 3 1368 314 243 70 70 chr4 102746635 102746750 -52883370 - MLT1A1 LTR MaLR -463 164 50 3 1368 1695 265 47 33 chr4 102746779 102747228 -52882892 + MT2A LTR ERVL 2 456 -77 3 1368 216 0 0 0 chr4 102747283 102747307 -52882813 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1368 400 312 194 14 chr4 102747307 102747518 -52882602 + L1MDa LINE L1 96 344 -6289 3 1368 253 262 0 58 chr4 102747766 102747835 -52882285 + L1MDa LINE L1 767 831 -5802 3 1368 296 258 155 0 chr4 102747975 102748072 -52882048 + PB1D9 SINE Alu 1 112 -8 3 1368 430 278 99 20 chr4 102748169 102748480 -52881640 + L1MDa LINE L1 1060 1404 -5136 3 1368 243 0 0 0 chr4 102748511 102748538 -52881582 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1368 798 197 7 7 chr4 102748543 102748681 -52881439 - B1_Mur2 SINE Alu -9 140 3 3 1368 550 266 14 0 chr4 102748719 102748862 -52881258 + B3A SINE B2 8 152 -46 3 1368 23 0 0 0 chr4 102748898 102748921 -52881199 + AT_rich Low_complexity Low_complexity 1 23 0 3 1368 1129 66 0 0 chr4 102748936 102749072 -52881048 - B1_Mm SINE Alu -10 137 2 3 1368 240 186 0 17 chr4 102749090 102749150 -52880970 + L1MDa LINE L1 1454 1512 -5121 3 1368 192 152 0 0 chr4 102749350 102749383 -52880737 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 3 1368 246 257 43 0 chr4 102749408 102749478 -52880642 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 3 1368 4836 35 2 0 chr4 102749581 102750222 -52879898 + L1Md_T LINE L1 6009 6582 0 3 1368 211 271 17 0 chr4 102750366 102750425 -52879695 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1368 15695 133 102 22 chr4 102750443 102754480 -52875640 + Lx LINE L1 2221 6652 -2 3 1368 313 258 124 0 chr4 102754536 102754633 -52875487 + PB1D9 SINE Alu 3 111 -9 3 1368 216 298 0 0 chr4 102755763 102755877 -52874243 + GA-rich Low_complexity Low_complexity 3 116 0 3 1368 462 281 33 0 chr4 102756237 102756358 -52873762 - ID_B1 SINE B4 -2 222 98 3 1368 682 299 94 34 chr4 102756397 102756664 -52873456 - B4 SINE B4 -8 284 2 3 1368 22 0 0 0 chr4 102756783 102756805 -52873315 + AT_rich Low_complexity Low_complexity 1 22 0 3 1368 21 0 0 0 chr4 102757019 102757040 -52873080 + AT_rich Low_complexity Low_complexity 1 21 0 3 1368 35 0 0 0 chr4 102757049 102757084 -52873036 + AT_rich Low_complexity Low_complexity 1 35 0 3 1368 521 315 87 36 chr4 102757365 102757923 -52872197 - L1M4c LINE L1 -3755 2627 2006 3 1368 611 272 108 0 chr4 102757954 102758149 -52871971 - B3 SINE B2 0 216 1 3 1368 331 294 149 27 chr4 102758263 102758598 -52871522 - L1M4c LINE L1 -4603 1781 1406 3 1368 476 319 101 18 chr4 102758885 102759054 -52871066 - ID_B1 SINE B4 -4 220 38 3 1368 311 365 60 20 chr4 102759115 102759266 -52870854 - LTR79 LTR ERVL -370 157 1 3 1368 234 302 20 20 chr4 102759509 102759608 -52870512 + MIR SINE MIR 123 228 -40 3 1368 21 0 0 0 chr4 102759653 102759674 -52870446 + AT_rich Low_complexity Low_complexity 1 21 0 3 21 257 27 0 51 chr4 102760440 102760479 -52869641 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 3 1369 833 140 7 42 chr4 102760479 102760621 -52869499 - B1_Mur3 SINE Alu -12 137 1 3 1369 21 0 0 0 chr4 102760754 102760775 -52869345 + AT_rich Low_complexity Low_complexity 1 21 0 3 1369 687 263 0 7 chr4 102760884 102761037 -52869083 + B3A SINE B2 1 152 -46 3 1369 214 192 26 44 chr4 102761037 102761270 -52868850 + C-rich Low_complexity Low_complexity 1 228 0 3 1369 268 183 19 50 chr4 102761328 102761489 -52868631 + C-rich Low_complexity Low_complexity 2 157 0 3 1369 1224 55 0 0 chr4 102761709 102761855 -52868265 - B1_Mus2 SINE Alu 0 147 2 3 1369 1242 46 0 34 chr4 102761855 102762024 -52868096 - L1Md_F2 LINE L1 -7 6575 6410 3 1369 240 221 181 9 chr4 102762683 102762788 -52867332 - L1MA6 LINE L1 -155 6145 6023 3 1369 2658 69 3 11 chr4 102763615 102763967 -52866153 + L1_Mus1 LINE L1 6219 6567 0 3 1369 3397 158 50 11 chr4 102765644 102766245 -52863875 + Lx3C LINE L1 6336 6965 -11 3 1369 186 43 0 0 chr4 102766245 102766268 -52863852 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 3 1369 3397 158 50 11 chr4 102766268 102766280 -52863840 + Lx3C LINE L1 6966 6973 -3 3 1369 343 266 287 4 chr4 102766497 102766954 -52863166 - L1MC3 LINE L1 -344 7441 6856 3 1369 258 344 106 41 chr4 102767189 102767359 -52862761 + B3A SINE B2 1 181 -17 3 1369 396 0 0 0 chr4 102767437 102767481 -52862639 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1369 243 274 40 27 chr4 102767489 102767564 -52862556 - ID4 SINE ID -7 76 1 3 1369 751 167 253 12 chr4 102767716 102767886 -52862234 + B3 SINE B2 1 211 -5 3 1369 372 244 325 40 chr4 102768615 102768867 -52861253 + RMER15 LTR ERVL 241 564 -11 3 1369 378 0 0 0 chr4 102769775 102769817 -52860303 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 3 1369 1043 78 6 44 chr4 102769817 102769977 -52860143 - B2_Mm2 SINE B2 -40 155 2 3 1369 667 187 82 0 chr4 102770035 102770169 -52859951 - B1_Mus2 SINE Alu 0 147 3 3 1369 570 148 0 0 chr4 102770182 102770283 -52859837 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1369 720 198 133 34 chr4 102770506 102770794 -52859326 + ORR1D1 LTR MaLR 3 372 -2 3 1369 283 335 37 0 chr4 102771254 102771445 -52858675 + L1_Rod LINE L1 1205 1402 -4445 3 1369 301 308 34 77 chr4 102771498 102771870 -52858250 + L1_Mur3 LINE L1 1473 1837 -4043 3 1369 422 299 106 27 chr4 102772124 102772500 -52857620 + L1_Mur3 LINE L1 2104 2526 -3354 3 1369 1633 270 114 24 chr4 102772629 102773594 -52856526 - L1_Mur3 LINE L1 -586 5294 4243 3 1369 549 307 93 29 chr4 102773961 102774273 -52855847 - L1ME3A LINE L1 -79 6094 5763 3 1369 915 180 0 0 chr4 102774326 102774476 -52855644 - B1_Mur4 SINE Alu 0 150 1 3 1369 237 333 119 35 chr4 102774501 102774644 -52855476 + RSINE1 SINE B4 3 157 -8 3 1369 226 231 210 24 chr4 102774721 102774845 -52855275 - L1ME3A LINE L1 -539 5634 5488 3 1369 539 298 49 27 chr4 102775395 102775578 -52854542 + B3A SINE B2 1 187 -11 4 1369 349 277 120 35 chr4 102775620 102775762 -52854358 + RSINE1 SINE B4 3 156 -9 4 1369 714 204 7 7 chr4 102776349 102776487 -52853633 - URR1B DNA MER1_type -87 138 1 4 1369 21 0 0 0 chr4 102776604 102776625 -52853495 + AT_rich Low_complexity Low_complexity 1 21 0 4 1369 2485 119 25 53 chr4 102777529 102777964 -52852156 - MT2B LTR ERVL 0 601 179 4 1369 5196 107 66 82 chr4 102777961 102778124 -52851996 + ORR1A4-int LTR MaLR 809 971 -992 4 1369 1206 55 0 0 chr4 102778124 102778270 -52851850 + B1_Mm SINE Alu 1 146 -1 4 1369 5196 135 94 70 chr4 102778270 102779617 -52850503 + ORR1A4-int LTR MaLR 15 1792 0 4 1369 524 268 50 7 chr4 102780184 102780323 -52849797 - RSINE1 SINE B4 -18 147 3 4 1369 579 248 98 61 chr4 102780375 102780538 -52849582 - B3 SINE B2 -47 169 1 4 1369 584 281 59 0 chr4 102780850 102781103 -52849017 + Lx8 LINE L1 6827 7094 -379 4 1369 523 256 81 81 chr4 102781116 102781131 -52848989 + Lx8 LINE L1 7225 7236 -237 4 1369 285 98 0 0 chr4 102781131 102781172 -52848948 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1369 523 256 81 81 chr4 102781172 102781403 -52848717 + Lx8 LINE L1 7237 7471 -2 4 1369 478 205 261 17 chr4 102781945 102782064 -52848056 - B1_Mur2 SINE Alu 0 149 2 4 1369 382 235 36 36 chr4 102782104 102782188 -52847932 - ID_B1 SINE B4 -7 217 134 4 1369 315 298 176 12 chr4 102782244 102782563 -52847557 + L1MCa LINE L1 10 380 -6128 4 1369 324 291 57 62 chr4 102782584 102782760 -52847360 + L1MCa LINE L1 458 632 -5876 4 1369 337 250 0 0 chr4 102782766 102782826 -52847294 + ID_B1 SINE B4 84 143 -81 4 1369 308 286 59 39 chr4 102782826 102782868 -52847252 + PB1D7 SINE Alu 3 106 -14 4 1369 381 318 81 81 chr4 102782871 102783107 -52847013 + L1MCb LINE L1 638 873 -5172 4 1369 420 249 118 6 chr4 102783134 102783304 -52846816 + L1MCb LINE L1 941 1129 -4916 4 1369 1349 259 96 40 chr4 102784310 102784781 -52845339 + RMER5 LTR ERV1 33 529 -5 4 1369 454 183 200 0 chr4 102785022 102785142 -52844978 + B1_Mur4 SINE Alu 1 144 -6 4 1369 186 133 0 0 chr4 102785219 102785249 -52844871 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1369 219 227 200 76 chr4 102785781 102785886 -52844234 + PB1D9 SINE Alu 2 119 -1 4 1369 201 171 0 24 chr4 102786923 102786965 -52843155 + G-rich Low_complexity Low_complexity 6 46 0 4 1369 261 119 0 0 chr4 102787081 102787123 -52842997 + (CGG)n Simple_repeat Simple_repeat 2 43 0 4 1369 201 243 0 86 chr4 102787758 102787839 -52842281 + MIR SINE MIR 60 133 -75 4 1369 180 179 0 0 chr4 102789034 102789073 -52841047 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1369 418 228 25 0 chr4 102789146 102789225 -52840895 - ID4_ SINE ID -1 82 2 4 1369 180 152 0 0 chr4 102790807 102790840 -52839280 + T-rich Low_complexity Low_complexity 3 35 0 4 1369 29 70 0 0 chr4 102791821 102791878 -52838242 + GC_rich Low_complexity Low_complexity 1 57 0 4 1369 25 65 0 0 chr4 102792158 102792204 -52837916 + GC_rich Low_complexity Low_complexity 1 46 0 4 1369 22 0 0 0 chr4 102792356 102792378 -52837742 + GC_rich Low_complexity Low_complexity 1 22 0 4 1369 263 204 22 72 chr4 102792743 102792842 -52837278 - ID4 SINE ID -57 95 1 4 1369 252 77 0 0 chr4 102796154 102796193 -52833927 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1369 23 0 0 0 chr4 102797067 102797090 -52833030 + AT_rich Low_complexity Low_complexity 1 23 0 4 1369 521 256 50 0 chr4 102798132 102798253 -52831867 - B1_Mur1 SINE Alu -19 130 4 4 1369 305 250 26 77 chr4 102799386 102799464 -52830656 + ID SINE ID 2 75 -149 4 1369 25 90 0 0 chr4 102799613 102799680 -52830440 + AT_rich Low_complexity Low_complexity 1 67 0 4 1369 344 267 273 24 chr4 102801730 102801895 -52828225 - B3 SINE B2 -9 207 2 4 1369 203 304 114 68 chr4 102802411 102802630 -52827490 + MIRb SINE MIR 28 256 -12 4 1369 522 216 0 41 chr4 102804192 102804313 -52825807 - PB1D9 SINE Alu 0 120 5 4 1369 1114 88 0 0 chr4 102804695 102804842 -52825278 + B1_Mus2 SINE Alu 1 147 0 4 1369 183 42 0 0 chr4 102804846 102804870 -52825250 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 1369 234 0 0 0 chr4 102806109 102806135 -52823985 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1369 275 239 104 0 chr4 102807278 102807345 -52822775 + MIRb SINE MIR 195 268 0 4 1369 306 73 0 0 chr4 102807695 102807736 -52822384 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1369 371 333 20 34 chr4 102807974 102807991 -52822129 + ID_B1 SINE B4 78 223 0 4 1369 419 292 69 8 chr4 102807991 102808122 -52821998 + B1F1 SINE Alu 11 149 0 4 1369 321 26 0 0 chr4 102808189 102808227 -52821893 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1369 351 0 0 0 chr4 102808228 102808267 -52821853 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1369 804 130 175 0 chr4 102810186 102810340 -52819780 + B2_Mm2 SINE B2 1 181 -14 4 1369 614 275 28 33 chr4 102810563 102810739 -52819381 - B3A SINE B2 -13 203 28 4 1369 549 110 0 0 chr4 102810741 102810823 -52819297 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1369 246 62 0 0 chr4 102812028 102812060 -52818060 + (GGA)n Simple_repeat Simple_repeat 2 33 0 4 1369 253 376 0 23 chr4 102812138 102812225 -52817895 - Tigger7 DNA MER2_type 0 2491 2407 4 1369 228 208 54 27 chr4 102812450 102812524 -52817596 - L1MD3 LINE L1 -84 7911 7836 4 1369 453 221 70 0 chr4 102812988 102813074 -52817046 - ID_B1 SINE B4 -56 168 77 4 1369 24 53 0 0 chr4 102813546 102813584 -52816536 + AT_rich Low_complexity Low_complexity 1 38 0 4 1369 192 163 0 0 chr4 102814178 102814221 -52815899 + T-rich Low_complexity Low_complexity 2 44 0 4 1369 228 143 0 39 chr4 102814223 102814274 -52815846 - B3 SINE B2 0 216 168 4 1369 1307 90 27 0 chr4 102814988 102815176 -52814944 + B2_Mm2 SINE B2 2 194 -1 4 1369 268 320 72 0 chr4 102815319 102815416 -52814704 - MER5A DNA MER1_type -64 125 22 4 1369 21 0 0 0 chr4 102815475 102815496 -52814624 + AT_rich Low_complexity Low_complexity 1 21 0 4 1369 194 119 145 48 chr4 102815570 102815632 -52814488 - MIR SINE MIR -36 226 159 4 1369 616 255 192 18 chr4 102815901 102816125 -52813995 - B4A SINE B4 -6 286 24 4 1369 248 242 13 143 chr4 102817254 102817331 -52812789 + ID4_ SINE ID 4 70 -13 4 1369 576 191 0 0 chr4 102817489 102817583 -52812537 + B1_Mur4 SINE Alu 1 94 -56 4 1369 528 157 172 8 chr4 102817728 102817856 -52812264 - B1_Mur3 SINE Alu 0 149 1 4 1369 403 267 9 28 chr4 102818217 102818325 -52811795 - PB1D10 SINE Alu -11 106 1 4 1369 413 321 121 48 chr4 102818598 102818847 -52811273 - MER2 DNA MER2_type -6 339 73 4 1369 1363 45 85 0 chr4 102819477 102819654 -52810466 + B2_Mm1t SINE B2 2 193 0 4 1369 475 244 98 0 chr4 102820322 102820445 -52809675 - B1_Mus1 SINE Alu -13 135 1 4 1369 436 236 0 11 chr4 102820448 102820538 -52809582 + PB1D10 SINE Alu 29 117 0 4 1369 426 226 191 0 chr4 102820622 102820737 -52809383 + B1_Mur4 SINE Alu 3 139 -11 4 1369 408 316 31 25 chr4 102822129 102822291 -52807829 + RSINE1 SINE B4 3 165 0 4 1369 594 241 99 7 chr4 102823848 102823990 -52806130 - RSINE1 SINE B4 -2 163 9 4 1369 550 292 39 53 chr4 102824244 102824450 -52805670 + B3 SINE B2 13 215 -1 4 1369 446 234 229 23 chr4 102825097 102825272 -52804848 - B3 SINE B2 -4 212 2 4 1369 275 122 20 0 chr4 102825833 102825882 -52804238 + (ATGGTG)n Simple_repeat Simple_repeat 1 50 0 4 1369 315 245 47 141 chr4 102825971 102826099 -52804021 - B1F SINE Alu -7 142 27 4 1369 347 291 0 44 chr4 102826039 102826129 -52803991 - ID_B1 SINE B4 -57 167 82 4 1369 726 281 182 46 chr4 102826339 102827195 -52802925 - L1MA4 LINE L1 -380 5920 4868 4 1369 657 211 502 31 chr4 102827536 102827700 -52802420 - MTD LTR MaLR -66 353 121 4 1369 1329 104 5 10 chr4 102827700 102827894 -52802226 + B2_Mm1t SINE B2 1 193 0 4 1369 657 191 18 120 chr4 102827894 102828018 -52802102 - MTD LTR MaLR -299 120 1 4 1369 258 32 0 0 chr4 102828498 102828529 -52801591 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1369 310 304 28 38 chr4 102828530 102828636 -52801484 - PB1D10 SINE Alu -12 105 1 4 1369 333 100 0 0 chr4 102829575 102829625 -52800495 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 4 1369 522 0 0 0 chr4 102830084 102830142 -52799978 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 4 1369 471 324 28 0 chr4 102830216 102830358 -52799762 + B1F1 SINE Alu 1 146 -3 4 1369 1012 142 137 0 chr4 102830515 102830712 -52799408 - URR1B DNA MER1_type 0 225 2 4 1369 219 114 0 0 chr4 102831189 102831224 -52798896 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1369 546 299 30 44 chr4 102831415 102831618 -52798502 - B4 SINE B4 0 292 93 4 1369 244 104 43 29 chr4 102832887 102832956 -52797164 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1369 773 93 16 48 chr4 102833848 102833954 -52796166 + PB1D9 SINE Alu 1 108 -12 4 1369 261 0 0 0 chr4 102833954 102833983 -52796137 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1369 773 93 16 48 chr4 102833983 102834000 -52796120 + PB1D9 SINE Alu 109 120 0 4 1369 742 182 30 36 chr4 102834117 102834282 -52795838 + B2_Mm2 SINE B2 2 165 -30 4 1369 256 83 20 20 chr4 102834474 102834523 -52795597 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1369 514 249 16 159 chr4 102834549 102834740 -52795380 - B3A SINE B2 -43 150 1 4 1369 22 0 0 0 chr4 102836288 102836310 -52793810 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 216 204 0 0 chr4 102837203 102837247 -52792873 + T-rich Low_complexity Low_complexity 1 44 0 4 1369 511 204 29 0 chr4 102837263 102837366 -52792754 - PB1D7 SINE Alu -13 107 2 4 1369 1067 184 9 18 chr4 102837872 102838094 -52792026 + ID_B1 SINE B4 2 221 -3 4 1369 2203 117 61 23 chr4 102838731 102839125 -52790995 - RLTR9E LTR ERVK 0 409 1 5 1369 1150 63 0 0 chr4 102839650 102839792 -52790328 + B1_Mus2 SINE Alu 1 142 -5 5 1369 287 315 9 44 chr4 102839830 102839943 -52790177 + ID_B1 SINE B4 104 212 -12 5 1369 540 184 26 35 chr4 102839986 102840099 -52790021 - B1_Mur4 SINE Alu -7 143 32 5 1369 514 125 0 0 chr4 102840240 102840320 -52789800 + B1_Mus1 SINE Alu 7 86 -62 5 1369 228 219 219 0 chr4 102840656 102840695 -52789425 - MER46C DNA MER2_type -229 109 68 5 1369 526 51 0 25 chr4 102840695 102840775 -52789345 + (TAA)n Simple_repeat Simple_repeat 2 79 0 5 1369 228 219 219 0 chr4 102840775 102840817 -52789303 - MER46C DNA MER2_type -271 67 11 5 1369 736 200 0 8 chr4 102841169 102841300 -52788820 - B3 SINE B2 -86 130 1 5 1369 2786 54 166 142 chr4 102841651 102842151 -52787969 - RLTR1B LTR ERV1 0 512 1 5 1369 30 27 0 0 chr4 102842210 102842247 -52787873 + AT_rich Low_complexity Low_complexity 1 37 0 5 1369 495 0 0 0 chr4 102842436 102842491 -52787629 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1369 237 226 226 0 chr4 102842683 102842776 -52787344 + L1MA7 LINE L1 5850 5963 -328 5 1369 790 161 0 13 chr4 102845686 102845843 -52784277 + GA-rich Low_complexity Low_complexity 2 156 0 5 1369 571 133 19 0 chr4 102845836 102845941 -52784179 + A-rich Low_complexity Low_complexity 4 110 0 5 1369 2005 188 110 4 chr4 102847973 102848444 -52781676 + RLTR11A2 LTR ERVK 6 526 -1 5 1369 1207 96 0 46 chr4 102848996 102849047 -52781073 + B2_Mm2 SINE B2 4 47 -148 5 1369 2968 86 9 14 chr4 102849047 102849472 -52780648 - L1_Mus3 LINE L1 0 6638 6216 5 1369 1207 96 0 46 chr4 102849472 102849617 -52780503 + B2_Mm2 SINE B2 48 191 -4 5 1369 215 203 17 0 chr4 102849635 102849694 -52780426 + GA-rich Low_complexity Low_complexity 2 61 0 5 1369 238 303 44 22 chr4 102850006 102850097 -52780023 - MLT1A LTR MaLR -281 93 1 5 1369 209 337 173 8 chr4 102850930 102851190 -52778930 + L2 LINE L2 2761 3063 -356 5 1369 1111 108 7 0 chr4 102853874 102854022 -52776098 + B1_Mur4 SINE Alu 1 149 -1 5 1369 496 268 101 35 chr4 102854366 102854594 -52775526 + L1MB8 LINE L1 5598 5840 -338 5 1369 821 158 27 7 chr4 102855145 102855292 -52774828 - B1_Mur4 SINE Alu 0 150 1 5 1369 1201 181 150 39 chr4 102855873 102856206 -52773914 + ORR1C2 LTR MaLR 15 384 0 5 1369 689 297 96 11 chr4 102856227 102856499 -52773621 + Lx8 LINE L1 6931 7225 -248 5 1369 21 57 0 0 chr4 102856789 102856824 -52773296 + AT_rich Low_complexity Low_complexity 1 35 0 5 1369 1155 168 61 0 chr4 102856842 102857039 -52773081 - B3 SINE B2 -7 209 1 5 1369 850 210 0 0 chr4 102857863 102858006 -52772114 + B1_Mur4 SINE Alu 2 144 -6 5 1369 282 211 24 106 chr4 102858088 102858173 -52771947 + MT2B LTR ERVL 162 239 -362 5 1369 638 227 8 8 chr4 102858102 102858235 -52771885 + B1_Mur2 SINE Alu 14 146 -3 5 1369 198 0 0 0 chr4 102858236 102858258 -52771862 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1369 251 297 178 8 chr4 102858299 102858428 -52771692 + RSINE1 SINE B4 3 153 -12 5 1369 210 37 0 0 chr4 102858447 102858474 -52771646 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1369 3983 213 87 27 chr4 102858495 102859425 -52770695 + Lx9 LINE L1 6523 7520 -124 5 1369 1239 41 0 0 chr4 102859425 102859572 -52770548 + B1_Mm SINE Alu 1 147 0 5 1369 3983 213 87 27 chr4 102859572 102859700 -52770420 + Lx9 LINE L1 7521 7644 0 5 1369 328 174 29 14 chr4 102859961 102860031 -52770089 + ID4 SINE ID 2 72 -11 5 1369 280 283 0 77 chr4 102862036 102862134 -52767986 - B4 SINE B4 -74 91 3 5 1369 303 309 51 10 chr4 102862218 102862316 -52767804 - RSINE1 SINE B4 -62 103 2 5 1369 302 252 225 22 chr4 102863643 102863781 -52766339 + Lx8 LINE L1 7210 7375 -98 5 1369 215 353 0 0 chr4 102863782 102863850 -52766270 + B2_Mm2 SINE B2 2 69 -126 5 1369 414 0 0 0 chr4 102863906 102863952 -52766168 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1369 455 181 0 0 chr4 102865154 102865237 -52764883 + B3 SINE B2 55 137 -79 5 1369 555 298 99 0 chr4 102865559 102865821 -52764299 - L1M5 LINE L1 -553 5611 5324 5 1369 350 208 162 108 chr4 102865882 102866141 -52763979 - B4A SINE B4 -18 274 2 5 1369 537 256 66 0 chr4 102866179 102866316 -52763804 - RSINE1 SINE B4 -17 148 3 5 1369 223 184 20 20 chr4 102866997 102867047 -52763073 + GA-rich Low_complexity Low_complexity 2 51 0 5 1369 677 229 35 0 chr4 102867461 102867605 -52762515 - B1_Mur1 SINE Alu 0 149 1 5 1369 21 0 0 0 chr4 102867615 102867636 -52762484 + AT_rich Low_complexity Low_complexity 1 21 0 5 1369 2071 198 56 14 chr4 102867665 102868166 -52761954 + RMER5 LTR ERV1 13 534 0 5 1369 819 201 0 0 chr4 102868224 102868403 -52761717 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1369 484 280 29 18 chr4 102868533 102868704 -52761416 + RLTR42-int LTR ERVK 1227 1399 -4123 5 1369 255 238 32 0 chr4 102869673 102869736 -52760384 + ID2 SINE ID 5 69 -14 5 1369 196 98 0 73 chr4 102870613 102870668 -52759452 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 5 1369 257 286 62 16 chr4 102870669 102870797 -52759323 + Lx8 LINE L1 7337 7470 -3 5 1369 396 0 0 0 chr4 102871329 102871373 -52758747 + (TATG)n Simple_repeat Simple_repeat 4 47 0 5 1369 1233 81 69 6 chr4 102871467 102871641 -52758479 + B2_Mm2 SINE B2 2 186 -9 5 1369 23 33 0 0 chr4 102872031 102872061 -52758059 + AT_rich Low_complexity Low_complexity 1 30 0 5 1369 462 232 0 0 chr4 102872092 102872191 -52757929 - ID_B1 SINE B4 0 224 126 5 1369 397 214 52 26 chr4 102872227 102872342 -52757778 - PB1D7 SINE Alu -2 118 1 5 1369 3051 179 82 77 chr4 102872351 102873095 -52757025 - RMER1B Other Other 0 1066 2 5 1369 181 284 156 10 chr4 102874965 102875061 -52755059 + MIRc SINE MIR 136 245 -23 5 1369 589 93 23 74 chr4 102875245 102875420 -52754700 + CT-rich Low_complexity Low_complexity 4 169 0 5 1369 605 221 17 6 chr4 102875448 102875625 -52754495 + CT-rich Low_complexity Low_complexity 2 180 0 5 1369 378 61 0 0 chr4 102875627 102875676 -52754444 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 5 1369 613 182 41 0 chr4 102875676 102875797 -52754323 - B1_Mur3 SINE Alu 0 149 24 5 1369 229 335 131 12 chr4 102876125 102876285 -52753835 + MIRb SINE MIR 84 262 -6 5 1369 866 293 76 0 chr4 102876971 102877275 -52752845 + Lx8 LINE L1 6960 7286 -187 5 1369 186 43 0 0 chr4 102877362 102877385 -52752735 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 1369 459 223 19 0 chr4 102878384 102878487 -52751633 - PB1D10 SINE Alu -4 113 9 5 1369 311 294 20 0 chr4 102878396 102878498 -52751622 - ID_B1 SINE B4 -42 182 79 5 1369 291 54 0 0 chr4 102878521 102878558 -52751562 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 5 1369 423 281 0 19 chr4 102878558 102878663 -52751457 - ID_B1 SINE B4 -14 210 108 5 1369 405 259 223 0 chr4 102878734 102878846 -52751274 + B1_Mur2 SINE Alu 5 141 -8 5 1369 508 236 55 41 chr4 102880416 102880433 -52749687 - B1F SINE Alu 0 149 137 5 1369 198 0 0 0 chr4 102880433 102880455 -52749665 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 1369 508 236 55 41 chr4 102880455 102880583 -52749537 - B1F SINE Alu -13 136 2 5 1369 272 226 84 0 chr4 102881053 102881148 -52748972 + B1F SINE Alu 19 120 -29 5 1369 414 0 0 0 chr4 102881220 102881266 -52748854 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1369 598 236 45 39 chr4 102882021 102882175 -52747945 + RSINE1 SINE B4 5 159 -6 5 1369 212 309 138 0 chr4 102882783 102882877 -52747243 + MIRc SINE MIR 55 161 -107 5 1369 324 264 244 77 chr4 102883696 102883852 -52746268 + B3A SINE B2 1 182 -16 5 1369 23 0 0 0 chr4 102884127 102884150 -52745970 + AT_rich Low_complexity Low_complexity 1 23 0 5 1369 24 0 0 0 chr4 102884695 102884719 -52745401 + AT_rich Low_complexity Low_complexity 1 24 0 5 1369 28 48 0 0 chr4 102884757 102884799 -52745321 + AT_rich Low_complexity Low_complexity 1 42 0 5 1369 472 227 204 45 chr4 102884799 102884956 -52745164 - B3 SINE B2 -29 187 6 5 1369 22 35 0 0 chr4 102886825 102886854 -52743266 + AT_rich Low_complexity Low_complexity 1 29 0 5 1369 23 54 0 0 chr4 102887229 102887266 -52742854 + GC_rich Low_complexity Low_complexity 1 37 0 5 1369 207 125 36 48 chr4 102887471 102887555 -52742565 + (CGG)n Simple_repeat Simple_repeat 2 84 0 5 1369 248 229 8 56 chr4 102887555 102887680 -52742440 + (CGGGG)n Simple_repeat Simple_repeat 1 119 0 5 1369 596 319 19 23 chr4 102888661 102888924 -52741196 - L1MB4 LINE L1 -94 6086 5825 5 1369 350 331 17 33 chr4 102889233 102889414 -52740706 - MLT1A1 LTR MaLR 0 408 197 5 1369 493 218 18 18 chr4 102890232 102890344 -52739776 - B3A SINE B2 -85 113 2 5 1369 321 26 0 0 chr4 102890426 102890464 -52739656 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1369 946 184 35 5 chr4 102890593 102890790 -52739330 - B3 SINE B2 -13 203 1 5 1370 688 176 111 0 chr4 102892219 102892372 -52737748 - Lx7 LINE L1 0 7696 7527 5 1370 1138 75 13 0 chr4 102892372 102892531 -52737589 + B2_Mm2 SINE B2 2 162 -33 5 1370 186 43 0 0 chr4 102892532 102892555 -52737565 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1370 213 217 0 0 chr4 102892563 102892609 -52737511 + A-rich Low_complexity Low_complexity 2 47 0 5 1370 206 219 0 0 chr4 102892645 102892686 -52737434 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1370 1047 73 0 0 chr4 102892710 102892846 -52737274 + B1_Mus2 SINE Alu 1 136 -11 5 1370 1477 191 46 99 chr4 102892861 102893274 -52736846 - Lx7 LINE L1 -290 7406 7016 5 1370 3376 127 174 25 chr4 102893362 102893583 -52736537 - RMER12 LTR ERVK -123 1199 955 5 1370 351 0 0 0 chr4 102893583 102893622 -52736498 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1370 3376 127 174 25 chr4 102893622 102893725 -52736395 - RMER12 LTR ERVK -368 954 800 5 1370 198 0 0 0 chr4 102893725 102893747 -52736373 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 6 1370 3376 127 174 25 chr4 102893747 102894197 -52735923 - RMER12 LTR ERVK -523 799 309 5 1370 201 292 0 0 chr4 102894197 102894245 -52735875 + C-rich Low_complexity Low_complexity 2 49 0 6 1370 621 271 10 68 chr4 102894260 102894466 -52735654 + B3A SINE B2 5 198 0 6 1370 318 138 0 0 chr4 102894488 102894546 -52735574 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1370 673 216 127 21 chr4 102895334 102895523 -52734597 + B3 SINE B2 5 213 -3 6 1370 1754 195 152 86 chr4 102895620 102895663 -52734457 + RMER19C LTR ERVK 1 42 -569 6 1370 2189 78 6 56 chr4 102895663 102896002 -52734118 + RLTRETN_Mm LTR ERVK 1 322 0 6 1370 1754 195 152 86 chr4 102896002 102896531 -52733589 + RMER19C LTR ERVK 43 611 0 6 1370 485 322 116 84 chr4 102897055 102897303 -52732817 + MLT2B3 LTR ERVL 2 245 -309 6 1370 231 36 0 0 chr4 102897303 102897331 -52732789 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1370 485 322 116 84 chr4 102897331 102897608 -52732512 + MLT2B3 LTR ERVL 246 544 -10 6 1370 272 264 164 0 chr4 102897916 102898026 -52732094 - ID_B1 SINE B4 -7 217 90 6 1370 568 197 65 8 chr4 102898086 102898209 -52731911 + ID_B1 SINE B4 79 208 -16 6 1370 508 118 36 22 chr4 102898241 102898380 -52731740 + GA-rich Low_complexity Low_complexity 4 144 0 6 1370 321 271 130 40 chr4 102898537 102898637 -52731483 + ORR1E LTR MaLR 3 111 -248 6 1370 3546 21 118 0 chr4 102899130 102899555 -52730565 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1370 761 264 60 78 chr4 102899601 102899934 -52730186 - MER57D LTR ERV1 -7 404 78 6 1370 410 285 38 50 chr4 102899991 102900150 -52729970 + RSINE1 SINE B4 3 159 -6 6 1370 273 57 0 0 chr4 102900153 102900188 -52729932 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1370 457 224 17 86 chr4 102900650 102900767 -52729353 - PB1D10 SINE Alu -1 116 8 6 1370 1008 259 90 22 chr4 102900867 102901190 -52728930 + ORR1D2 LTR MaLR 1 345 -25 6 1370 1848 200 25 10 chr4 102901185 102901579 -52728541 + MTD LTR MaLR 18 417 -2 6 1370 273 237 53 0 chr4 102901649 102901725 -52728395 - ID4 SINE ID 0 83 4 6 1370 3229 31 0 23 chr4 102904199 102904588 -52725532 - L1Md_F3 LINE L1 -4 6580 6201 6 1370 690 228 129 84 chr4 102904926 102905213 -52724907 - RMER12 LTR ERVK -29 1293 994 6 1370 1126 261 87 118 chr4 102905301 102905523 -52724597 - RMER12 LTR ERVK -1049 799 587 6 1370 910 169 0 47 chr4 102905523 102905715 -52724405 - L1Md_F3 LINE L1 -1 6583 6401 6 1370 1370 219 67 68 chr4 102905715 102906316 -52723804 - RMER12 LTR ERVK -1262 586 1 6 1370 300 360 96 96 chr4 102906713 102907026 -52723094 - MLT1A0 LTR MaLR -52 313 1 6 1370 1064 155 125 0 chr4 102907670 102907870 -52722250 - URR1A DNA MER1_type -1 225 1 6 1370 21 36 0 0 chr4 102909501 102909529 -52720591 + AT_rich Low_complexity Low_complexity 1 28 0 6 1370 1415 87 16 0 chr4 102909698 102909881 -52720239 + B2_Mm2 SINE B2 2 187 -8 6 1370 710 254 27 16 chr4 102909942 102910126 -52719994 - B3A SINE B2 -10 188 3 6 1370 805 197 81 16 chr4 102910192 102910419 -52719701 - ORR1D1 LTR MaLR -142 225 1 6 1370 4571 211 102 34 chr4 102910419 102910568 -52719552 - ORR1D1-int LTR MaLR 0 1370 1205 6 1370 254 29 0 28 chr4 102910568 102910604 -52719516 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 6 1370 4571 211 102 34 chr4 102910604 102911013 -52719107 - ORR1D1-int LTR MaLR -166 1204 775 6 1370 2398 141 12 49 chr4 102911013 102911422 -52718698 + ORR1B1 LTR MaLR 1 394 0 6 1370 4571 211 102 34 chr4 102911422 102912144 -52717976 - ORR1D1-int LTR MaLR -596 774 1 6 1370 1081 204 88 85 chr4 102912149 102912513 -52717607 - ORR1D1 LTR MaLR -9 365 1 6 1370 498 339 27 27 chr4 102912903 102913088 -52717032 + B4A SINE B4 106 290 -2 6 1370 22 0 0 0 chr4 102913105 102913127 -52716993 + AT_rich Low_complexity Low_complexity 1 22 0 6 1370 859 211 56 56 chr4 102913196 102913412 -52716708 - B3 SINE B2 0 216 1 6 1370 575 272 178 45 chr4 102913453 102913830 -52716290 - Lx8 LINE L1 -7 7466 7040 6 1370 298 198 113 10 chr4 102913855 102913952 -52716168 - L1ME2 LINE L1 -3 6161 6055 6 1370 1401 80 11 5 chr4 102914017 102914206 -52715914 - B2_Mm1t SINE B2 -2 191 2 6 1370 376 297 106 30 chr4 102914752 102914884 -52715236 + RSINE1 SINE B4 11 152 -13 6 1370 22 35 0 0 chr4 102914912 102914941 -52715179 + AT_rich Low_complexity Low_complexity 1 29 0 6 1370 465 315 89 36 chr4 102915579 102915625 -52714495 - ID_B1 SINE B4 -10 214 171 6 1370 1387 93 10 0 chr4 102915625 102915818 -52714302 - B2_Mm2 SINE B2 0 195 1 6 1370 465 315 89 36 chr4 102915818 102915939 -52714181 - ID_B1 SINE B4 -54 170 38 6 1370 316 239 0 56 chr4 102916019 102916090 -52714030 - ID4_ SINE ID -3 80 14 6 1370 733 291 63 13 chr4 102916598 102916897 -52713223 + L1MA4 LINE L1 5106 5419 -461 6 1370 5011 190 34 14 chr4 102916894 102917865 -52712255 + Lx7 LINE L1 6378 7367 -329 6 1370 312 120 0 0 chr4 102917870 102917920 -52712200 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1370 1166 294 66 12 chr4 102917972 102918534 -52711586 + L1MA4 LINE L1 5446 6003 -1693 6 1370 2083 180 11 80 chr4 102918536 102918900 -52711220 - MTC LTR MaLR 0 421 85 6 1370 899 171 37 21 chr4 102918900 102919091 -52711029 - B2_Mm2 SINE B2 0 195 2 6 1370 2083 180 11 80 chr4 102919091 102919178 -52710942 - MTC LTR MaLR -337 84 2 6 1370 1132 263 84 5 chr4 102919286 102919668 -52710452 + L1M2 LINE L1 4031 4442 -1701 6 1370 641 234 89 122 chr4 102919713 102920083 -52710037 + RLTR12B LTR ERVK 47 404 -124 6 1370 573 245 66 33 chr4 102920252 102920493 -52709627 + L1M2 LINE L1 4495 4743 -1397 6 1370 944 159 101 6 chr4 102920672 102920888 -52709232 + L1MA4 LINE L1 6054 6292 -8 6 1370 392 19 0 0 chr4 102921180 102921233 -52708887 - B1_Mm SINE Alu 0 147 95 6 1370 404 222 61 0 chr4 102921365 102921464 -52708656 - PB1D10 SINE Alu -10 107 3 6 1370 278 268 20 20 chr4 102921805 102921904 -52708216 + BC1_Mm scRNA scRNA 1 99 -53 6 1370 414 176 0 0 chr4 102922010 102922129 -52707991 + GA-rich Low_complexity Low_complexity 2 120 0 6 1370 900 27 0 0 chr4 102922265 102922376 -52707744 + (CA)n Simple_repeat Simple_repeat 1 111 0 6 1370 364 271 142 11 chr4 102922543 102922733 -52707387 + L1MEf LINE L1 298 512 -5582 6 1370 408 307 121 65 chr4 102923085 102923897 -52706223 + L1MEf LINE L1 875 1731 -4469 6 1370 921 169 0 7 chr4 102923971 102924120 -52706000 - B1_Mur3 SINE Alu -1 148 1 6 1370 1213 134 117 19 chr4 102924163 102924369 -52705751 - URR1A DNA MER1_type 0 226 1 6 1370 1676 178 30 89 chr4 102924478 102924872 -52705248 + ORR1D1 LTR MaLR 1 371 -3 6 1370 7539 86 17 4 chr4 102925026 102926355 -52703765 + L1_Mus3 LINE L1 5386 6638 0 6 1370 185 283 0 0 chr4 102926707 102926753 -52703367 + L2a LINE L2 3377 3422 -4 6 1370 344 243 0 13 chr4 102927251 102927326 -52702794 + ID4_ SINE ID 3 76 -7 6 1370 1246 129 11 0 chr4 102927383 102927569 -52702551 + B2_Mm2 SINE B2 2 189 -6 6 1370 1666 42 0 0 chr4 102928417 102928610 -52701510 + B2_Mm1t SINE B2 1 193 0 6 1370 201 74 0 0 chr4 102928622 102928649 -52701471 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1370 564 209 25 34 chr4 102928666 102928785 -52701335 - RSINE1 SINE B4 -44 121 4 6 1370 938 57 0 0 chr4 102928927 102929051 -52701069 - B1_Mus1 SINE Alu -24 124 1 6 1370 828 213 20 34 chr4 102929902 102930045 -52700075 + MTD LTR MaLR 219 357 -62 6 1370 1358 232 70 36 chr4 102930045 102930403 -52699717 - ORR1D2 LTR MaLR 0 370 1 6 1370 828 213 20 34 chr4 102930403 102930463 -52699657 + MTD LTR MaLR 358 419 0 6 1370 214 352 88 5 chr4 102930509 102930726 -52699394 - L2 LINE L2 -632 2787 2553 6 1370 512 310 0 43 chr4 102930981 102931143 -52698977 - RSINE1 SINE B4 -5 160 6 6 1370 770 210 6 23 chr4 102931192 102931349 -52698771 - ORR1D1 LTR MaLR -38 336 183 6 1370 488 16 16 0 chr4 102931349 102931410 -52698710 + (GGGA)n Simple_repeat Simple_repeat 2 63 0 6 1370 770 210 6 23 chr4 102931410 102931423 -52698697 - ORR1D1 LTR MaLR -192 182 170 6 1370 867 255 0 31 chr4 102931538 102931761 -52698359 - B3 SINE B2 0 216 1 6 1370 32 0 0 0 chr4 102932439 102932471 -52697649 + AT_rich Low_complexity Low_complexity 1 32 0 6 1370 452 119 75 6 chr4 102933430 102933590 -52696530 + (TG)n Simple_repeat Simple_repeat 1 171 0 6 1370 632 259 7 0 chr4 102933626 102933765 -52696355 - ID_B1 SINE B4 -4 220 81 6 1370 1207 174 0 5 chr4 102933888 102934107 -52696013 - URR1B DNA MER1_type 0 225 8 6 1370 821 220 145 69 chr4 102934281 102934599 -52695521 - MTD LTR MaLR -77 342 1 6 1370 1182 276 52 25 chr4 102935449 102935813 -52694307 + MTE2a LTR MaLR 1 374 -5 6 1370 758 293 77 34 chr4 102936932 102937310 -52692810 + RMER5 LTR ERV1 141 534 0 6 1370 321 290 84 40 chr4 102937310 102937536 -52692584 - L2 LINE L2 -1287 2132 1897 6 1370 410 288 19 38 chr4 102938241 102938400 -52691720 + RMER15 LTR ERVL 403 558 -17 6 1370 415 336 0 0 chr4 102938453 102938560 -52691560 + PB1 SINE Alu 1 107 -20 6 1370 996 114 0 0 chr4 102938573 102938749 -52691371 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 1370 507 33 0 0 chr4 102939509 102939570 -52690550 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 6 1370 324 0 0 0 chr4 102939815 102939851 -52690269 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1370 877 317 91 20 chr4 102940038 102940389 -52689731 + MLT2B3 LTR ERVL 1 376 -178 6 1370 372 266 10 0 chr4 102940884 102940991 -52689129 + MLT2B3 LTR ERVL 409 516 -46 6 1370 388 230 38 10 chr4 102941240 102941353 -52688767 + B1F SINE Alu 15 128 -21 6 1370 673 320 0 0 chr4 102942068 102942249 -52687871 + B3A SINE B2 2 182 -16 6 1370 184 322 81 0 chr4 102942300 102942387 -52687733 + MIR SINE MIR 18 111 -151 6 1370 26 74 0 0 chr4 102942652 102942706 -52687414 + AT_rich Low_complexity Low_complexity 1 54 0 6 1370 209 182 18 0 chr4 102942735 102942790 -52687330 + CT-rich Low_complexity Low_complexity 3 58 0 6 1370 682 169 49 14 chr4 102942798 102942942 -52687178 - B1_Mur4 SINE Alu -1 149 1 6 1370 718 233 14 0 chr4 102943087 102943233 -52686887 - B1_Mur1 SINE Alu -1 148 1 6 1370 1202 21 31 27 chr4 102943552 102944528 -52685592 + (CA)n Simple_repeat Simple_repeat 1 980 0 6 1370 285 75 0 0 chr4 102944529 102944569 -52685551 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1370 483 253 188 10 chr4 102945004 102945196 -52684924 + RMER15 LTR ERVL 336 561 -14 6 1370 1303 264 119 80 chr4 102945250 102945864 -52684256 + RLTR26 LTR ERVK 1 638 -4 6 1370 36150 34 0 0 chr4 102945921 102951343 -52678777 + L1Md_T LINE L1 71 5589 -297 7 1370 9194 4 0 0 chr4 102951343 102952339 -52677781 + L1Md_T LINE L1 5590 6585 0 7 1370 1399 316 68 31 chr4 102952447 102953123 -52676997 + RMER15-int LTR ERVL 230 930 -4069 6 1370 498 297 31 69 chr4 102953168 102953360 -52676760 + RLTR12B LTR ERVK 1 189 -339 7 1370 1109 80 0 0 chr4 102953360 102953497 -52676623 + B1_Mus1 SINE Alu 2 138 -10 7 1370 329 59 0 38 chr4 102953497 102953550 -52676570 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1370 498 286 50 91 chr4 102953550 102953769 -52676351 + RLTR12B LTR ERVK 49 277 -251 7 1370 3476 172 98 33 chr4 102953774 102954684 -52675436 + RLTR22_Mur LTR ERVK 1 969 -879 7 1370 853 186 170 9 chr4 102954906 102955129 -52674991 + RLTR22_Mur LTR ERVK 1590 1848 0 7 1370 427 286 30 0 chr4 102955319 102955452 -52674668 + RMER15-int LTR ERVL 1141 1277 -3722 6 1370 804 259 68 54 chr4 102955465 102955759 -52674361 + RMER15-int LTR ERVL 1329 1626 -3373 6 1370 740 362 36 48 chr4 102956026 102956525 -52673595 + RMER15-int LTR ERVL 1649 2141 -2858 6 1370 738 77 48 0 chr4 102956528 102956632 -52673488 - B2_Mm2 SINE B2 -85 110 2 7 1370 4027 5 0 0 chr4 102957254 102957694 -52672426 - L1Md_A LINE L1 0 6582 6143 7 1370 229 26 0 50 chr4 102957715 102957755 -52672365 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7 1370 209 182 50 12 chr4 102957991 102958063 -52672057 - MIRc SINE MIR -24 184 109 7 1370 377 346 26 51 chr4 102958125 102958320 -52671800 + B4A SINE B4 1 190 -102 7 1370 395 277 115 51 chr4 102958598 102958754 -52671366 - B4A SINE B4 -126 166 1 7 1370 355 180 28 83 chr4 102959022 102959131 -52670989 - MLT1A1 LTR MaLR -2 406 304 7 1370 899 178 32 16 chr4 102959321 102959509 -52670611 + B2_Mm2 SINE B2 5 195 0 7 1370 729 182 153 0 chr4 102960176 102960352 -52669768 + URR1A DNA MER1_type 17 219 -7 7 1370 590 132 9 0 chr4 102962129 102962235 -52667885 - URR1B DNA MER1_type -2 223 117 7 1370 299 303 0 6 chr4 102962291 102962457 -52667663 + (CA)n Simple_repeat Simple_repeat 2 166 0 7 1370 198 290 0 0 chr4 102962476 102962569 -52667551 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1370 324 0 0 0 chr4 102962582 102962618 -52667502 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1370 261 0 0 0 chr4 102962618 102962646 -52667474 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1370 200 260 120 0 chr4 102962749 102962849 -52667271 + MIR SINE MIR 79 190 -72 7 1370 25 0 0 0 chr4 102962931 102962956 -52667164 + AT_rich Low_complexity Low_complexity 1 25 0 7 1370 261 139 0 0 chr4 102964521 102964564 -52665556 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1370 514 191 171 9 chr4 102964566 102964677 -52665443 - B1F SINE Alu -12 137 9 7 1370 180 111 0 0 chr4 102964873 102964900 -52665220 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1370 796 177 0 58 chr4 102964904 102965060 -52665060 + B1_Mur4 SINE Alu 3 149 -1 7 1370 4694 76 3 2 chr4 102965080 102965683 -52664437 - L1Md_F2 LINE L1 0 6582 5979 7 1370 11213 63 0 3 chr4 102965683 102967184 -52662936 + L1Md_F2 LINE L1 4475 5970 -612 7 1370 468 72 0 0 chr4 102967435 102967504 -52662616 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1370 269 308 49 16 chr4 102967785 102967907 -52662213 + MLT1B LTR MaLR 250 375 -15 7 1370 228 299 82 10 chr4 102967938 102968036 -52662084 + PB1D10 SINE Alu 1 105 -12 7 1370 1835 172 28 14 chr4 102968036 102968389 -52661731 - ORR1B2 LTR MaLR -8 359 2 7 1370 218 284 27 0 chr4 102968421 102968495 -52661625 + ID4 SINE ID 8 83 0 7 1370 414 0 0 0 chr4 102968770 102968816 -52661304 + (CCTA)n Simple_repeat Simple_repeat 3 48 0 7 1370 3162 50 3 0 chr4 102970861 102971241 -52658879 - L1_Mus1 LINE L1 0 6567 6187 7 1370 183 129 0 0 chr4 102971605 102971636 -52658484 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 7 1370 713 271 192 66 chr4 102972456 102973108 -52657012 - RMER13A LTR ERVK -20 840 107 7 1370 315 286 0 56 chr4 102973359 102973448 -52656672 - PB1D10 SINE Alu -21 96 13 7 1370 22 0 0 0 chr4 102973476 102973498 -52656622 + AT_rich Low_complexity Low_complexity 1 22 0 7 1370 4318 107 31 12 chr4 102973498 102974139 -52655981 - Lx4A LINE L1 -3 7055 6403 7 1370 452 304 164 78 chr4 102974157 102974344 -52655776 + B4 SINE B4 2 217 -75 7 1370 314 23 23 0 chr4 102974344 102974387 -52655733 + (CACAA)n Simple_repeat Simple_repeat 4 47 0 7 1370 452 304 164 78 chr4 102974387 102974467 -52655653 + B4 SINE B4 218 292 0 7 1370 189 196 0 0 chr4 102975287 102975333 -52654787 + CT-rich Low_complexity Low_complexity 3 48 0 7 1370 1064 225 83 53 chr4 102975701 102976146 -52653974 - MT2A LTR ERVL -12 589 1 7 1370 387 0 0 0 chr4 102977507 102977550 -52652570 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1370 450 0 0 0 chr4 102977550 102977599 -52652521 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1370 409 322 65 7 chr4 102977799 102977952 -52652168 - B3A SINE B2 -36 162 1 7 1370 861 116 0 0 chr4 102978402 102978557 -52651563 + (GA)n Simple_repeat Simple_repeat 2 156 0 7 1370 832 240 77 0 chr4 102978927 102979110 -52651010 + B3 SINE B2 15 211 -5 7 1370 2060 148 86 3 chr4 102979190 102979529 -52650591 + ORR1B2 LTR MaLR 1 367 0 7 1370 21 71 0 0 chr4 102979807 102979849 -52650271 + AT_rich Low_complexity Low_complexity 1 42 0 7 1370 242 271 0 28 chr4 102980103 102980175 -52649945 + B1_Mur4 SINE Alu 1 70 -80 7 1370 554 155 29 0 chr4 102980466 102980569 -52649551 + B1_Mur3 SINE Alu 44 149 0 7 1370 270 337 28 23 chr4 102980588 102980764 -52649356 - MLT1H LTR MaLR -316 233 57 7 1370 993 294 41 8 chr4 102982483 102982820 -52647300 - Lx8 LINE L1 -660 6984 6593 7 1370 719 269 77 103 chr4 102983056 102983521 -52646599 - RMER13A LTR ERVK -394 466 14 7 1370 1489 233 154 11 chr4 102983547 102983989 -52646131 - Lx8 LINE L1 -939 6534 6030 7 1370 1492 268 111 37 chr4 102983997 102984540 -52645580 + Lx8 LINE L1 6891 7473 0 7 1370 653 163 149 12 chr4 102984629 102984797 -52645323 + B2_Mm2 SINE B2 2 192 -3 7 1370 251 286 0 0 chr4 102984943 102985009 -52645111 - B1F1 SINE Alu -81 68 3 7 1370 189 26 79 0 chr4 102985139 102985177 -52644943 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1370 480 321 0 21 chr4 102985185 102985325 -52644795 - B1F SINE Alu -8 141 5 7 1370 242 293 0 13 chr4 102985825 102985901 -52644219 + MLT1H2 LTR MaLR 21 95 -394 7 1370 249 336 59 0 chr4 102985913 102986032 -52644088 - LTR88c LTR Genie? -459 403 278 7 1370 207 0 0 0 chr4 102987081 102987104 -52643016 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1370 253 266 11 11 chr4 102988275 102988370 -52641750 + MER102a DNA MER1_type 71 165 -165 7 1370 803 171 0 14 chr4 102988820 102988962 -52641158 - B1_Mur4 SINE Alu -6 144 5 7 1370 322 305 215 44 chr4 102989950 102990138 -52639982 - L1MEc LINE L1 -5408 992 761 7 1370 221 0 35 0 chr4 102990138 102990167 -52639953 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1370 322 305 215 44 chr4 102990167 102990698 -52639422 - L1MEc LINE L1 -5640 760 150 7 1370 1212 106 0 0 chr4 102991161 102991340 -52638780 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 7 1370 1338 89 21 16 chr4 102991340 102991533 -52638587 - B2_Mm2 SINE B2 -1 194 1 7 1370 334 310 40 10 chr4 102995072 102995173 -52634947 - PB1D10 SINE Alu 0 117 14 7 1370 211 256 22 34 chr4 102995593 102995682 -52634438 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 7 1370 1734 211 63 10 chr4 102995762 102996159 -52633961 + MTD LTR MaLR 2 419 0 7 1370 341 198 0 12 chr4 102996638 102996720 -52633400 + CT-rich Low_complexity Low_complexity 3 83 0 7 1370 1114 57 21 0 chr4 102996746 102996887 -52633233 - B1_Mus2 SINE Alu 0 147 4 7 1370 504 0 0 0 chr4 102996887 102996943 -52633177 + (GCTTG)n Simple_repeat Simple_repeat 1 56 0 7 1370 663 75 9 18 chr4 102996944 102997053 -52633067 + (TTCTC)n Simple_repeat Simple_repeat 4 111 0 7 1370 597 295 28 33 chr4 102997054 102997268 -52632852 - ID_B1 SINE B4 0 224 12 7 1370 26 0 0 0 chr4 102997407 102997433 -52632687 + AT_rich Low_complexity Low_complexity 1 26 0 7 1370 432 97 0 0 chr4 102999199 102999261 -52630859 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1370 279 71 0 0 chr4 102999261 102999303 -52630817 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1370 1159 172 108 48 chr4 102999388 102999723 -52630397 - RLTR40 LTR ERVK -423 394 40 7 1370 817 170 0 75 chr4 103000025 103000184 -52629936 + B1_Mur3 SINE Alu 1 147 -2 1 1370 225 258 86 43 chr4 103000447 103000540 -52629580 - MER57C2 LTR ERV1 -182 252 156 2 1370 561 30 0 0 chr4 103000690 103000757 -52629363 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1370 187 297 116 42 chr4 103000846 103000941 -52629179 + MIRc SINE MIR 48 149 -119 4 1370 453 254 132 14 chr4 103001137 103001281 -52628839 + RSINE1 SINE B4 4 164 -1 5 1370 633 223 133 33 chr4 103002386 103002567 -52627553 + B3 SINE B2 12 210 -6 6 1370 372 248 144 54 chr4 103002609 103002720 -52627400 + PB1 SINE Alu 6 126 -1 7 1370 378 0 0 0 chr4 103002782 103002824 -52627296 + (CTCA)n Simple_repeat Simple_repeat 1 42 0 8 1370 5204 169 55 10 chr4 103004569 103005462 -52624658 - Lx5 LINE L1 0 7050 6118 9 1370 8032 131 25 5 chr4 103005462 103006723 -52623397 + L1_Mur2 LINE L1 3583 4869 -1008 1 1370 22 0 0 0 chr4 103007217 103007239 -52622881 + AT_rich Low_complexity Low_complexity 1 22 0 1 1370 438 248 39 10 chr4 103007682 103007784 -52622336 + PB1D10 SINE Alu 5 109 -8 1 1370 1250 48 7 0 chr4 103008271 103008417 -52621703 - B1_Mus2 SINE Alu 0 147 1 1 1370 607 221 92 202 chr4 103008496 103008911 -52621209 - ORR1D2 LTR MaLR -1 369 1 1 1370 13359 25 6 0 chr4 103008965 103011194 -52618926 - L1Md_T LINE L1 0 6582 4371 1 1370 336 262 98 14 chr4 103011174 103011317 -52618803 - L1M5 LINE L1 -2183 3963 3809 1 1370 277 241 55 18 chr4 103011347 103011457 -52618663 - L1M4 LINE L1 -905 5241 5128 1 1370 421 299 76 18 chr4 103011450 103011780 -52618340 - L1M5 LINE L1 -3034 3112 2764 1 1370 1203 195 243 24 chr4 103011780 103012121 -52617999 + MTC LTR MaLR 1 416 -5 1 1370 363 96 0 0 chr4 103012401 103012453 -52617667 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 1 1370 391 179 87 78 chr4 103012456 103012559 -52617561 - PB1D9 SINE Alu -16 104 1 2 1370 743 123 0 8 chr4 103012577 103012700 -52617420 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 2 1370 468 0 0 0 chr4 103012734 103012786 -52617334 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 2 1370 2180 117 21 92 chr4 103013237 103013662 -52616458 + RMER10B LTR ERVL 3 397 -1 2 1370 344 65 65 0 chr4 103014834 103014896 -52615224 + L1Md_F3 LINE L1 6518 6583 -1 2 1370 1063 273 38 48 chr4 103015949 103016264 -52613856 - ORR1E LTR MaLR -10 349 38 2 1370 1495 80 16 0 chr4 103016291 103016479 -52613641 - B2_Mm2 SINE B2 -4 191 1 2 1370 182 323 39 68 chr4 103016556 103016659 -52613461 + MIR SINE MIR 36 135 -127 2 1370 192 122 224 0 chr4 103017759 103017808 -52612312 + MIR SINE MIR 94 153 -109 2 1370 218 220 32 63 chr4 103017922 103017985 -52612135 - B4 SINE B4 -230 62 2 2 1370 2925 75 0 0 chr4 103018993 103019351 -52610769 + L1Md_F2 LINE L1 6223 6580 -2 3 1370 243 0 0 0 chr4 103019421 103019448 -52610672 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1370 388 337 62 9 chr4 103019457 103019613 -52610507 - MIR3 SINE MIR -3 205 45 3 1370 339 338 30 0 chr4 103020387 103020520 -52609600 - MIR SINE MIR -30 232 96 3 1370 245 287 0 87 chr4 103021380 103021483 -52608637 + MIR SINE MIR 111 204 -58 3 1370 698 233 15 0 chr4 103021770 103021903 -52608217 + B1_Mur3 SINE Alu 2 136 -13 3 1370 949 242 34 5 chr4 103021924 103022132 -52607988 - B3 SINE B2 -1 215 2 3 1370 204 200 0 0 chr4 103022145 103022180 -52607940 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 3 1370 429 308 90 14 chr4 103022198 103022343 -52607777 - RSINE1 SINE B4 -8 157 2 3 171 462 278 194 7 chr4 103022350 103022633 -52607487 - L1MB1 LINE L1 -1 6167 5832 3 1371 514 286 29 18 chr4 103022857 103023028 -52607092 - L1M3b LINE L1 -4289 2560 2388 4 1371 673 273 146 24 chr4 103023097 103023604 -52606516 - L1M3b LINE L1 -4516 2263 1695 4 1371 647 277 82 0 chr4 103023619 103023825 -52606295 - ID_B1 SINE B4 0 224 2 4 1371 241 244 22 89 chr4 103024356 103024446 -52605674 - B4A SINE B4 -121 171 88 4 1371 1640 172 199 8 chr4 103024667 103025019 -52605101 - MTC LTR MaLR -2 419 1 4 1371 286 243 40 13 chr4 103025744 103025819 -52604301 - ID2 SINE ID -3 80 4 4 1371 294 318 12 0 chr4 103025922 103026007 -52604113 + CT-rich Low_complexity Low_complexity 3 88 0 4 1371 195 42 0 0 chr4 103026031 103026055 -52604065 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1371 981 235 26 40 chr4 103026502 103026728 -52603392 + ID_B1 SINE B4 2 224 0 4 1371 650 264 0 39 chr4 103026859 103027013 -52603107 - B1_Mur1 SINE Alu -1 148 1 4 1371 570 287 138 5 chr4 103027037 103027233 -52602887 - ID_B1 SINE B4 -1 223 2 4 1371 418 309 113 7 chr4 103027233 103027383 -52602737 - MLT1A0 LTR MaLR -42 323 158 5 1371 219 170 0 0 chr4 103027395 103027442 -52602678 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 5 1371 413 302 9 0 chr4 103027458 103027564 -52602556 - PB1D10 SINE Alu -8 109 3 5 1371 438 282 45 8 chr4 103027580 103027712 -52602408 - MLT1A0 LTR MaLR -216 149 13 5 1371 304 378 20 20 chr4 103029122 103029273 -52600847 - MLT1A LTR MaLR -197 177 27 5 1371 332 312 61 48 chr4 103029299 103029464 -52600656 + B4A SINE B4 8 174 -118 5 1371 773 199 13 33 chr4 103029791 103029802 -52600318 - B1_Mus1 SINE Alu 0 148 138 5 1371 260 27 27 0 chr4 103029802 103029839 -52600281 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1371 773 199 13 33 chr4 103029839 103029978 -52600142 - B1_Mus1 SINE Alu -11 137 2 5 1371 326 298 107 12 chr4 103031399 103031691 -52598429 - L1MA7 LINE L1 -33 6258 5929 5 1371 333 310 7 12 chr4 103031738 103031877 -52598243 - B1F2 SINE Alu -8 140 1 5 1371 1235 15 7 0 chr4 103032066 103032203 -52597917 + B1_Mus2 SINE Alu 1 138 -9 5 1371 243 0 0 0 chr4 103032203 103032230 -52597890 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1371 283 258 37 82 chr4 103032285 103032320 -52597800 - LTR37A LTR ERV1 -12 414 387 6 1371 1174 118 38 27 chr4 103032320 103032503 -52597617 - B2_Mm2 SINE B2 -9 186 2 6 1371 283 258 37 82 chr4 103032503 103032602 -52597518 - LTR37A LTR ERV1 -40 386 286 6 1371 22 0 0 0 chr4 103033181 103033203 -52596917 + AT_rich Low_complexity Low_complexity 1 22 0 6 1371 506 176 47 0 chr4 103033311 103033459 -52596661 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 1371 478 323 130 11 chr4 103033909 103034194 -52595926 + L2 LINE L2 2565 2883 -536 6 1371 1311 235 112 17 chr4 103034216 103034315 -52595805 - MTD LTR MaLR -39 380 261 6 1371 498 33 0 0 chr4 103034315 103034375 -52595745 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1371 1311 235 112 17 chr4 103034375 103034622 -52595498 - MTD LTR MaLR -159 260 1 6 1371 3192 44 13 0 chr4 103036098 103036488 -52593632 - L1Md_F2 LINE L1 -223 5660 5266 6 1371 7916 49 1 1 chr4 103036489 103037403 -52592717 + L1Md_F2 LINE L1 5669 6582 0 6 1371 274 256 139 8 chr4 103037590 103037712 -52592408 - L1MC1 LINE L1 -207 6126 5989 6 1371 247 239 87 0 chr4 103037813 103037905 -52592215 - HAL1 LINE L1 -141 2366 2267 7 1371 369 0 0 0 chr4 103037942 103037983 -52592137 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1371 276 309 86 57 chr4 103037995 103038331 -52591789 - HAL1 LINE L1 -313 2194 1849 7 1371 594 273 122 28 chr4 103039680 103039861 -52590259 - B3A SINE B2 0 198 1 7 1371 1158 93 0 0 chr4 103041362 103041501 -52588619 + B1_Mus1 SINE Alu 2 140 -8 7 1371 185 308 30 30 chr4 103042139 103042206 -52587914 - L2 LINE L2 -871 2548 2482 7 1371 26 0 0 0 chr4 103042323 103042349 -52587771 + AT_rich Low_complexity Low_complexity 1 26 0 7 1371 670 183 128 45 chr4 103043359 103043538 -52586582 - MTEa LTR MaLR -2 377 164 7 1371 402 172 0 0 chr4 103043541 103043640 -52586480 + GA-rich Low_complexity Low_complexity 1 99 0 7 1371 691 288 29 24 chr4 103043640 103043850 -52586270 - MTEb LTR MaLR -164 215 5 7 1371 251 276 118 25 chr4 103044744 103044863 -52585257 - MIRc SINE MIR -122 146 17 7 1371 196 397 0 0 chr4 103044967 103045040 -52585080 + L3 LINE CR1 4345 4417 -72 8 1371 1376 207 118 38 chr4 103045154 103045351 -52584769 - ORR1D1 LTR MaLR 0 374 166 8 1371 528 45 0 0 chr4 103045351 103045418 -52584702 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 8 1371 1376 207 118 38 chr4 103045418 103045566 -52584554 - ORR1D1 LTR MaLR -209 165 1 8 1371 39381 40 0 3 chr4 103046321 103052658 -52577462 - L1Md_T LINE L1 0 6585 167 8 1371 405 0 0 0 chr4 103052703 103052748 -52577372 + (T)n Simple_repeat Simple_repeat 1 45 0 8 1371 180 0 0 0 chr4 103053031 103053051 -52577069 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 1371 189 298 60 0 chr4 103054467 103054551 -52575569 - MIRb SINE MIR -118 150 62 8 1371 1294 233 87 28 chr4 103054764 103055121 -52574999 + MTEb LTR MaLR 1 378 -1 8 1371 4857 275 37 16 chr4 103055128 103056448 -52573672 + MTEb-int LTR MaLR 6 1353 -227 8 1371 353 245 26 78 chr4 103056448 103056561 -52573559 - MTEb LTR MaLR 0 379 273 8 1371 697 232 96 0 chr4 103056561 103056738 -52573382 - MTEa LTR MaLR 0 379 186 8 1371 562 161 0 0 chr4 103056737 103056824 -52573296 - B1_Mur3 SINE Alu -40 109 23 9 1371 1118 85 6 17 chr4 103056825 103057005 -52573115 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 9 1371 225 0 0 0 chr4 103057007 103057032 -52573088 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 9 1371 509 316 36 36 chr4 103057037 103057175 -52572945 - MTEa LTR MaLR -214 165 28 8 1371 634 289 16 11 chr4 103057223 103057412 -52572708 - MTEa-int LTR MaLR -11 1569 1380 8 1371 904 155 0 26 chr4 103057410 103057562 -52572558 - B1_Mur2 SINE Alu -1 148 1 9 1371 4605 264 67 55 chr4 103057562 103058931 -52571189 - MTEa-int LTR MaLR -186 1394 10 8 1371 967 315 46 7 chr4 103059131 103059412 -52570708 - MTEa LTR MaLR -46 333 42 9 1371 979 236 238 7 chr4 103059481 103059775 -52570345 + MTD LTR MaLR 58 419 0 9 1371 245 290 182 40 chr4 103060595 103060771 -52569349 - MIRb SINE MIR -9 259 59 9 1371 2435 164 25 5 chr4 103060894 103061298 -52568822 + MTC LTR MaLR 1 412 -9 9 1371 961 242 76 8 chr4 103063051 103063313 -52566807 - B4A SINE B4 -10 282 3 9 1371 279 350 79 51 chr4 103063353 103063567 -52566553 - MLT1J2 LTR MaLR -154 294 75 9 1371 225 282 167 0 chr4 103063857 103063935 -52566185 + MIRb SINE MIR 46 136 -132 1 1371 536 269 21 7 chr4 103064023 103064165 -52565955 + MamRep564 Unknown Unknown 100 243 -114 1 1371 232 269 125 51 chr4 103064560 103064736 -52565384 - Charlie7 DNA MER1_type -16 2596 2408 1 1371 27 0 0 0 chr4 103064903 103064930 -52565190 + AT_rich Low_complexity Low_complexity 1 27 0 1 1371 382 259 8 49 chr4 103065255 103065377 -52564743 - PB1D10 SINE Alu 0 117 1 1 1371 211 155 69 0 chr4 103065611 103065669 -52564451 + CT-rich Low_complexity Low_complexity 1 62 0 1 1371 322 327 9 45 chr4 103066096 103066208 -52563912 + MLT1F1 LTR MaLR 10 117 -452 1 1371 495 225 55 106 chr4 103066299 103066334 -52563786 - B2_Mm2 SINE B2 -3 192 158 1 1371 189 0 0 0 chr4 103066334 103066355 -52563765 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1371 862 213 4 8 chr4 103066355 103066518 -52563602 - B3A SINE B2 -38 157 4 1 1371 645 264 204 77 chr4 103066570 103066586 -52563534 + MLT1F1 LTR MaLR 94 107 -462 1 1371 246 43 20 60 chr4 103066586 103066636 -52563484 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1 1371 645 264 204 77 chr4 103066636 103066996 -52563124 + MLT1F1 LTR MaLR 108 518 -51 1 1371 787 45 0 18 chr4 103067148 103067262 -52562858 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1371 483 286 69 35 chr4 103067670 103067844 -52562276 + MER3 DNA MER1_type 22 201 -8 1 1371 225 292 71 54 chr4 103067856 103067968 -52562152 + MIRm SINE MIR 159 272 -4 1 1371 483 178 48 196 chr4 103069003 103069192 -52560928 - RSINE1 SINE B4 0 165 5 1 1371 2032 142 21 80 chr4 103069359 103069735 -52560385 - ORR1B1 LTR MaLR 0 394 41 1 1371 255 300 14 41 chr4 103069907 103069980 -52560140 - RSINE1 SINE B4 -12 153 83 1 1371 660 251 29 91 chr4 103070413 103070689 -52559431 - L1MA5 LINE L1 0 6300 6042 1 1371 922 250 64 28 chr4 103070748 103070999 -52559121 - MTEa LTR MaLR -117 262 3 1 1371 1866 270 112 19 chr4 103071097 103071689 -52558431 - MTEa-int LTR MaLR -933 647 1 1 1371 1558 220 86 17 chr4 103071693 103072044 -52558076 - MTEa LTR MaLR -4 375 1 1 1371 270 376 98 28 chr4 103072387 103072641 -52557479 + LTR16C LTR ERVL 11 282 -207 1 1371 302 254 35 64 chr4 103073841 103074001 -52556119 - L1MA5 LINE L1 -421 5879 5702 1 1371 1043 145 31 46 chr4 103074039 103074234 -52555886 + RMER15 LTR ERVL 22 213 -362 1 1371 1754 184 75 3 chr4 103074261 103074594 -52555526 - Lx5 LINE L1 -3 7047 6691 1 1371 1632 215 80 11 chr4 103074622 103074998 -52555122 + RMER15 LTR ERVL 174 575 0 1 1371 367 323 54 0 chr4 103074998 103075090 -52555030 + RSINE1 SINE B4 60 156 -9 1 1371 387 0 0 0 chr4 103075090 103075133 -52554987 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1371 351 0 0 0 chr4 103075790 103075829 -52554291 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1371 202 0 59 29 chr4 103076570 103076604 -52553516 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1371 621 328 149 26 chr4 103076643 103077072 -52553048 + MLT1L LTR MaLR 50 531 -79 1 1371 247 280 106 39 chr4 103078713 103078817 -52551303 - L2c LINE L2 0 3387 3277 1 1371 1170 237 116 30 chr4 103079267 103079602 -52550518 + MTD LTR MaLR 1 364 -55 1 1371 814 172 76 27 chr4 103079602 103079787 -52550333 + ORR1B2 LTR MaLR 1 194 -173 1 1371 267 328 67 6 chr4 103079821 103079976 -52550144 + MIR SINE MIR 16 186 -82 1 1371 670 254 45 50 chr4 103080582 103080781 -52549339 + B3A SINE B2 1 198 0 1 1371 228 314 43 0 chr4 103080826 103080896 -52549224 + ID4_ SINE ID 2 74 -9 1 1371 270 0 0 0 chr4 103080902 103080932 -52549188 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1371 301 325 41 52 chr4 103081822 103081869 -52548251 - MIRb SINE MIR -56 212 171 1 1371 1840 136 165 6 chr4 103081869 103082209 -52547911 + ORR1B1 LTR MaLR 1 394 0 1 1371 303 287 37 33 chr4 103082209 103082333 -52547787 - MIRc SINE MIR -98 170 40 1 1371 594 103 0 0 chr4 103082350 103082437 -52547683 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1371 398 269 13 0 chr4 103083570 103083681 -52546439 + MIR SINE MIR 8 124 -144 1 1371 281 321 187 69 chr4 103083777 103084114 -52546006 + LTR16E1 LTR ERVL 103 538 0 1 1371 920 282 22 4 chr4 103084176 103084404 -52545716 + B4A SINE B4 2 233 -59 1 1371 1024 268 28 133 chr4 103084414 103084806 -52545314 - MTE2a LTR MaLR -9 370 20 1 1371 1158 248 108 12 chr4 103084865 103085188 -52544932 - ORR1E LTR MaLR -5 354 1 1 1371 212 295 107 65 chr4 103085313 103085437 -52544683 - MIRm SINE MIR -23 245 87 1 1371 749 336 40 24 chr4 103085725 103086021 -52544099 + Tigger7 DNA MER2_type 3 303 -2188 1 1371 272 276 39 39 chr4 103086053 103086155 -52543965 + Tigger7 DNA MER2_type 960 1061 -1430 1 1371 711 269 55 6 chr4 103086375 103086558 -52543562 + B3A SINE B2 1 192 -6 1 1371 2076 185 79 3 chr4 103086762 103087153 -52542967 + MTC LTR MaLR 1 421 0 1 1371 391 304 4 38 chr4 103087304 103087544 -52542576 + CT-rich Low_complexity Low_complexity 1 231 0 1 1371 291 93 0 0 chr4 103088005 103088048 -52542072 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1371 222 219 0 0 chr4 103088060 103088124 -52541996 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1371 357 360 32 0 chr4 103088725 103088850 -52541270 + MER5A DNA MER1_type 51 179 -10 1 1371 2297 76 135 11 chr4 103089351 103089698 -52540422 - RLTR10 LTR ERVK 0 390 1 1 1371 8754 22 7 1 chr4 103089698 103090671 -52539449 - RLTR10-int LTR ERVK -19 1968 990 1 1371 507 336 31 31 chr4 103090753 103091176 -52538944 - RLTR10-int LTR ERVK -5987 1594 1172 1 1371 5926 34 9 1 chr4 103091202 103091887 -52538233 - RLTR10-int LTR ERVK -996 991 302 1 1371 2262 98 126 6 chr4 103091887 103092235 -52537885 - RLTR10 LTR ERVK 0 390 1 1 1371 1470 230 90 17 chr4 103092240 103092538 -52537582 + ORR1D2 LTR MaLR 1 328 -42 1 1371 2260 139 36 16 chr4 103092538 103092924 -52537196 - ORR1B1 LTR MaLR 0 394 1 1 1371 1470 230 90 17 chr4 103092924 103092970 -52537150 + ORR1D2 LTR MaLR 329 370 0 1 1371 712 224 31 25 chr4 103095387 103095547 -52534573 - RSINE1 SINE B4 -1 164 4 1 1371 265 324 184 0 chr4 103095685 103095821 -52534299 - Tigger12c DNA MER2_type -525 209 49 1 1371 7719 78 17 12 chr4 103096516 103097555 -52532565 - L1_Mus4 LINE L1 -6 6630 5587 1 1371 1267 97 17 0 chr4 103097583 103097759 -52532361 + L1_Mus4 LINE L1 5931 6109 -527 1 1371 564 60 0 0 chr4 103097751 103097818 -52532302 + L1_Mus4 LINE L1 5867 5933 -703 1 1371 835 303 40 72 chr4 103098013 103098361 -52531759 + MLT1A0 LTR MaLR 23 359 -6 1 1371 2182 173 43 10 chr4 103098367 103098759 -52531361 - MTD LTR MaLR -12 407 3 1 1371 180 162 151 70 chr4 103099011 103099097 -52531023 - L3 LINE CR1 -1847 2642 2550 1 1371 286 325 69 19 chr4 103099025 103099185 -52530935 + L2c LINE L2 2173 2340 -1079 1 1371 352 340 13 39 chr4 103099579 103099732 -52530388 - L1MC5 LINE L1 -191 7770 7622 1 1371 203 143 42 42 chr4 103099832 103099927 -52530193 + CT-rich Low_complexity Low_complexity 2 96 0 1 1371 385 306 124 44 chr4 103099930 103100340 -52529780 - L1MC5 LINE L1 -499 7462 7020 1 1371 337 326 47 85 chr4 103100345 103100580 -52529540 - L1MC5 LINE L1 -916 7045 6820 1 1371 266 339 93 30 chr4 103100653 103100921 -52529199 + L2c LINE L2 2703 2987 -432 1 1371 769 221 86 15 chr4 103101334 103101532 -52528588 - B3 SINE B2 -4 212 1 1 1371 589 299 58 0 chr4 103101565 103101702 -52528418 + RSINE1 SINE B4 8 152 -13 1 1371 369 109 0 0 chr4 103101746 103101801 -52528319 + (CCTG)n Simple_repeat Simple_repeat 1 55 0 1 1371 746 348 42 19 chr4 103101823 103102087 -52528033 - B4A SINE B4 -22 270 1 1 1371 225 246 73 0 chr4 103102324 103102400 -52527720 + L2c LINE L2 3333 3420 -6 1 1371 227 383 88 15 chr4 103102530 103102734 -52527386 + MIRc SINE MIR 13 231 -37 1 1371 356 240 118 20 chr4 103103091 103103193 -52526927 - PB1D10 SINE Alu -5 112 1 1 1371 409 275 40 65 chr4 103103748 103104008 -52526112 + MLT2B4 LTR ERVL 240 544 -12 1 1371 445 229 58 65 chr4 103104781 103104935 -52525185 - MIR SINE MIR -19 243 91 1 1371 792 122 0 0 chr4 103105010 103105133 -52524987 + (GGGA)n Simple_repeat Simple_repeat 3 125 0 1 1371 348 348 108 58 chr4 103105494 103105872 -52524248 - LTR33A_ LTR ERVL -62 469 73 1 1371 731 195 89 59 chr4 103106640 103106825 -52523295 - ORR1D2 LTR MaLR -7 363 172 1 1371 450 0 0 0 chr4 103106825 103106875 -52523245 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 1 1371 731 195 89 59 chr4 103106875 103106891 -52523229 - ORR1D2 LTR MaLR -199 171 156 1 1371 205 342 109 17 chr4 103107095 103107214 -52522906 - MIR SINE MIR -42 220 91 1 1371 1532 22 55 0 chr4 103110604 103110785 -52519335 - B2_Mm1a SINE B2 -1 192 2 1 1371 687 271 63 14 chr4 103110790 103111011 -52519109 - Charlie5 DNA MER1_type -141 2483 2252 1 1371 1274 245 118 18 chr4 103111229 103111561 -52518559 + MTE2b LTR MaLR 4 368 -11 1 1371 579 144 0 0 chr4 103112461 103112558 -52517562 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 1 1371 890 198 104 0 chr4 103112779 103112961 -52517159 + B3 SINE B2 1 201 -15 1 1371 189 0 0 0 chr4 103112963 103112984 -52517136 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1371 252 100 0 0 chr4 103112998 103113038 -52517082 + (TATG)n Simple_repeat Simple_repeat 3 42 0 1 1371 456 290 144 7 chr4 103113038 103113184 -52516936 - B3A SINE B2 -32 166 1 1 1371 618 14 0 0 chr4 103113493 103113564 -52516556 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 1 1371 686 228 0 0 chr4 103113625 103113761 -52516359 + B1F SINE Alu 1 136 -13 1 1371 498 181 0 0 chr4 103113761 103113905 -52516215 + (CA)n Simple_repeat Simple_repeat 2 145 0 1 1371 189 340 61 8 chr4 103114799 103114977 -52515143 + MIR SINE MIR 7 206 -62 1 1371 339 44 0 0 chr4 103115056 103115101 -52515019 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1371 431 237 43 58 chr4 103115102 103115241 -52514879 - RSINE1 SINE B4 -25 140 4 1 1371 290 322 32 48 chr4 103116246 103116370 -52513750 + ORR1E LTR MaLR 15 136 -223 1 1371 747 199 0 0 chr4 103116462 103116598 -52513522 + B1F SINE Alu 1 136 -13 1 1371 234 81 0 0 chr4 103116598 103116635 -52513485 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1371 500 294 82 19 chr4 103116697 103116905 -52513215 + ORR1E LTR MaLR 133 353 -6 1 1371 188 250 0 0 chr4 103118310 103118354 -52511766 + L3 LINE CR1 4335 4378 -111 1 1371 1278 80 0 0 chr4 103118881 103119057 -52511063 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1371 297 0 0 0 chr4 103119486 103119519 -52510601 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1371 190 303 19 39 chr4 103120151 103120254 -52509866 + MIRb SINE MIR 87 187 -81 1 1371 266 241 146 21 chr4 103120509 103120653 -52509467 - Lx9 LINE L1 -51 7593 7432 1 1371 1012 275 138 26 chr4 103121609 103121962 -52508158 - MTD LTR MaLR 0 379 18 2 1371 244 324 73 37 chr4 103122397 103122506 -52507614 - MIRb SINE MIR -122 146 34 2 1371 843 188 14 0 chr4 103123568 103123712 -52506408 + B1_Mus1 SINE Alu 2 147 -1 2 1371 187 114 0 43 chr4 103123715 103123761 -52506359 + A-rich Low_complexity Low_complexity 2 45 0 2 1371 665 301 40 37 chr4 103124288 103124585 -52505535 + MT2A LTR ERVL 85 382 -151 2 1371 6004 23 0 1 chr4 103126002 103126689 -52503431 + L1Md_F2 LINE L1 4900 5585 -298 2 1371 8353 43 1 2 chr4 103126690 103127687 -52502433 + L1Md_F2 LINE L1 5587 6582 0 2 1371 609 282 131 51 chr4 103128404 103128718 -52501402 - ORR1E LTR MaLR -20 339 1 2 1371 830 303 46 25 chr4 103130375 103130659 -52499461 - B4A SINE B4 -2 290 1 2 1371 185 0 40 0 chr4 103131140 103131165 -52498955 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 2 1371 494 291 155 17 chr4 103131307 103131597 -52498523 - L1ME1 LINE L1 0 6179 5850 2 1371 728 279 87 69 chr4 103131599 103131945 -52498175 + ORR1E LTR MaLR 1 352 -7 2 1371 459 0 0 0 chr4 103132103 103132154 -52497966 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1371 5347 54 32 8 chr4 103132168 103132957 -52497163 + RLTR13C2 LTR ERVK 1 893 0 2 1371 562 252 0 53 chr4 103132990 103133141 -52496979 - B3A SINE B2 -54 144 2 2 1371 244 250 0 0 chr4 103133162 103133214 -52496906 - L1ME1 LINE L1 -776 5668 5617 2 1371 234 244 0 80 chr4 103133437 103133562 -52496558 + T-rich Low_complexity Low_complexity 3 117 0 2 1371 400 282 18 0 chr4 103133562 103133675 -52496445 - B1F SINE Alu -29 120 1 2 1371 521 204 120 30 chr4 103133705 103133872 -52496248 - L1MA7 LINE L1 0 6291 6110 2 1371 409 252 15 54 chr4 103133906 103134036 -52496084 - L1MA7 LINE L1 -278 6034 5910 2 1371 244 247 24 24 chr4 103134037 103134120 -52496000 - L1MD LINE L1 -869 5277 5195 2 1371 297 344 15 30 chr4 103134176 103134311 -52495809 + MIRb SINE MIR 112 244 -24 2 1371 255 311 77 57 chr4 103134753 103134947 -52495173 + ORR1E LTR MaLR 51 248 -111 2 1371 413 351 48 140 chr4 103135476 103135612 -52494508 + LTR33C LTR ERVL 82 216 -413 2 1371 998 72 64 7 chr4 103135612 103135752 -52494368 - B1_Mus1 SINE Alu 0 148 1 2 1371 413 351 48 140 chr4 103135752 103136201 -52493919 + LTR33C LTR ERVL 217 613 -16 2 1371 266 352 99 67 chr4 103136515 103136798 -52493322 + LTR33A LTR ERVL 1 292 -228 2 1371 312 297 9 43 chr4 103137114 103137230 -52492890 + MIR SINE MIR 107 218 -44 2 1371 388 280 76 8 chr4 103137230 103137349 -52492771 + RSINE1 SINE B4 2 128 -37 2 1371 306 0 0 0 chr4 103137363 103137397 -52492723 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1371 202 222 0 22 chr4 103137483 103137529 -52492591 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 1371 539 220 23 0 chr4 103137874 103138047 -52492073 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 1371 300 83 0 0 chr4 103139142 103139190 -52490930 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1371 464 288 7 12 chr4 103139223 103139355 -52490765 - B3A SINE B2 -61 134 1 2 1371 217 238 0 0 chr4 103139517 103139559 -52490561 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1371 870 269 256 14 chr4 103139859 103140191 -52489929 + MER47B DNA MER2_type 7 418 0 2 1371 303 306 10 146 chr4 103140322 103140521 -52489599 - MIRc SINE MIR -6 262 91 2 1371 373 252 93 9 chr4 103140678 103140786 -52489334 - MTEa LTR MaLR -13 366 250 2 1371 307 272 58 14 chr4 103141478 103141616 -52488504 - L1MA10 LINE L1 -14 6320 6177 2 1371 228 86 0 0 chr4 103141633 103141668 -52488452 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1371 4621 203 47 43 chr4 103141682 103143058 -52487062 + Lx6 LINE L1 4967 6339 -711 2 1371 609 14 0 0 chr4 103143058 103143128 -52486992 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1371 2853 266 80 65 chr4 103143128 103143570 -52486550 + Lx6 LINE L1 6340 6808 -242 2 1371 445 273 86 11 chr4 103143590 103143764 -52486356 - L1MB1 LINE L1 -93 6096 5910 2 1371 1385 213 65 25 chr4 103143810 103144213 -52485907 + MT2A LTR ERVL 1 554 -47 2 1371 1070 189 13 43 chr4 103144233 103144395 -52485725 + URR1B DNA MER1_type 1 161 -64 2 1371 3482 25 5 0 chr4 103144395 103144789 -52485331 + MTA_Mm LTR MaLR 1 396 0 2 1371 9702 23 1 0 chr4 103144789 103145886 -52484234 + MTA_Mm-int LTR MaLR 1 1098 0 2 1371 3468 28 5 0 chr4 103145886 103146280 -52483840 + MTA_Mm LTR MaLR 1 396 0 2 1371 1070 189 13 43 chr4 103146280 103146347 -52483773 + URR1B DNA MER1_type 162 223 -2 2 1371 301 196 86 11 chr4 103146395 103146488 -52483632 - L1MB1 LINE L1 -312 5877 5778 2 1371 623 264 99 9 chr4 103146491 103146724 -52483396 + L1M3 LINE L1 5381 5634 -555 2 1371 515 320 46 6 chr4 103146784 103146957 -52483163 - B3A SINE B2 -18 180 1 2 1371 561 30 0 0 chr4 103147699 103147766 -52482354 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 1371 517 294 39 6 chr4 103148458 103148636 -52481484 + ERVL-E-int LTR ERVL 2084 2267 -3400 2 1371 457 347 139 26 chr4 103148809 103149558 -52480562 + L2a LINE L2 2302 3159 -267 2 1371 426 173 0 96 chr4 103149570 103149685 -52480435 + Lx2 LINE L1 6885 6988 -9 2 1371 2089 143 58 5 chr4 103149685 103150123 -52479997 - RLTR31_Mm LTR ERVK 0 561 21 2 1371 283 263 76 57 chr4 103150449 103150554 -52479566 - MLT1J LTR MaLR -375 137 31 2 1371 461 307 87 0 chr4 103151181 103151331 -52478789 + B3A SINE B2 1 163 -35 2 1371 398 94 0 15 chr4 103151354 103151419 -52478701 + (GGA)n Simple_repeat Simple_repeat 3 66 0 2 1371 228 182 0 0 chr4 103151422 103151466 -52478654 + GA-rich Low_complexity Low_complexity 1 44 0 2 1371 1677 36 0 0 chr4 103151537 103151730 -52478390 + B2_Mm1a SINE B2 1 193 0 2 1371 633 267 34 82 chr4 103152163 103152371 -52477749 - B3A SINE B2 0 198 1 2 1371 372 77 0 0 chr4 103152394 103152446 -52477674 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1371 514 361 13 0 chr4 103152462 103152620 -52477500 - RSINE1 SINE B4 0 165 6 2 171 592 347 44 12 chr4 103153440 103153688 -52476432 - LTR16C LTR ERVL 0 489 234 2 1372 24 0 0 0 chr4 103155229 103155253 -52474867 + AT_rich Low_complexity Low_complexity 1 24 0 2 1372 249 346 5 82 chr4 103155312 103155337 -52474783 + MLT1A1 LTR MaLR 3 25 -383 2 1372 3232 32 45 0 chr4 103155337 103155716 -52474404 + MTA_Mm LTR MaLR 1 396 0 2 1372 249 346 5 82 chr4 103155716 103155885 -52474235 + MLT1A1 LTR MaLR 26 182 -226 2 1372 328 291 26 35 chr4 103155939 103156053 -52474067 + MLT1A1 LTR MaLR 296 408 0 2 1372 504 271 45 91 chr4 103156062 103156326 -52473794 - Tigger9b DNA MER2_type -353 271 20 2 1372 264 343 36 36 chr4 103157119 103157231 -52472889 - ERVL-E-int LTR ERVL -1406 4261 4150 2 1372 495 0 0 0 chr4 103157590 103157645 -52472475 + (CAA)n Simple_repeat Simple_repeat 2 56 0 2 1372 564 308 86 12 chr4 103159489 103159732 -52470388 + MER2 DNA MER2_type 11 271 -74 2 1372 444 264 127 12 chr4 103160181 103160346 -52469774 - B3A SINE B2 -14 184 1 2 1372 2107 146 38 20 chr4 103160436 103160828 -52469292 - MTB_Mm LTR MaLR -8 399 1 2 1372 7059 46 13 11 chr4 103161986 103162881 -52467239 - L1Md_F2 LINE L1 0 6582 5686 2 1372 510 46 0 0 chr4 103162910 103162975 -52467145 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 1372 189 0 0 0 chr4 103163797 103163818 -52466302 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1372 254 311 0 0 chr4 103164214 103164304 -52465816 + (CACCAT)n Simple_repeat Simple_repeat 6 95 0 2 1372 611 216 37 0 chr4 103164555 103164689 -52465431 - MTE2b LTR MaLR -14 365 227 2 1372 253 300 0 0 chr4 103164690 103164760 -52465360 - MTE2b LTR MaLR -305 74 5 2 1372 621 0 0 0 chr4 103166193 103166262 -52463858 + (GGGA)n Simple_repeat Simple_repeat 2 70 0 2 1372 701 256 141 34 chr4 103166870 103167133 -52462987 - B4A SINE B4 -1 291 1 2 1372 221 122 0 39 chr4 103167875 103167926 -52462194 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1372 1754 122 13 13 chr4 103168747 103169045 -52461075 + ORR1A4 LTR MaLR 32 329 0 2 1372 1205 294 52 18 chr4 103169066 103169561 -52460559 - Lx9 LINE L1 -74 7570 7059 2 1372 235 296 14 14 chr4 103170751 103170823 -52459297 + MIRc SINE MIR 22 93 -175 2 1372 333 339 31 41 chr4 103171200 103171394 -52458726 + Charlie19a DNA Charlie 27 218 -168 2 1372 524 264 156 46 chr4 103171602 103171928 -52458192 - MLT1A0 LTR MaLR 0 365 4 2 1372 653 153 8 0 chr4 103173126 103173250 -52456870 + CT-rich Low_complexity Low_complexity 2 126 0 2 1372 195 69 0 0 chr4 103174132 103174161 -52455959 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1372 5559 197 85 78 chr4 103174556 103174985 -52455135 - Lx7 LINE L1 0 7696 7355 2 1372 423 56 0 0 chr4 103174985 103175039 -52455081 + (CAAG)n Simple_repeat Simple_repeat 2 55 0 2 1372 5559 197 85 78 chr4 103175039 103175565 -52454555 - Lx7 LINE L1 -342 7354 6746 2 1372 234 0 0 0 chr4 103175565 103175591 -52454529 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1372 5559 197 85 78 chr4 103175591 103176040 -52454080 - Lx7 LINE L1 -951 6745 6281 2 1372 757 236 0 77 chr4 103176042 103176249 -52453871 - Lx9 LINE L1 -447 7197 7007 2 1372 12826 97 28 15 chr4 103176402 103179278 -52450842 + Lx3B LINE L1 3970 6853 -120 2 1372 198 0 0 0 chr4 103179278 103179300 -52450820 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 2 1372 9518 138 53 8 chr4 103179300 103179414 -52450706 + Lx3B LINE L1 6854 7050 0 2 1372 300 326 91 0 chr4 103179429 103179604 -52450516 - LTR33A LTR ERVL -67 453 263 2 1372 610 148 16 8 chr4 103179756 103179885 -52450235 + GA-rich Low_complexity Low_complexity 1 130 0 2 1372 1164 68 0 13 chr4 103180175 103180324 -52449796 - B1_Mus1 SINE Alu 0 148 2 2 1372 229 268 72 12 chr4 103180532 103180615 -52449505 - MIR SINE MIR -142 120 33 2 1372 208 135 0 0 chr4 103180620 103180657 -52449463 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1372 639 87 0 0 chr4 103181520 103181624 -52448496 + (A)n Simple_repeat Simple_repeat 1 104 0 2 1372 336 312 75 20 chr4 103183094 103183241 -52446879 - MIRc SINE MIR -70 198 44 2 1372 957 162 16 9 chr4 103183931 103184248 -52445872 + (TCCA)n Simple_repeat Simple_repeat 1 318 0 2 1372 237 293 0 39 chr4 103184620 103184698 -52445422 + CT-rich Low_complexity Low_complexity 3 77 0 2 1372 1520 212 111 5 chr4 103184845 103185224 -52444896 - MTD LTR MaLR 0 419 1 2 1372 403 317 55 25 chr4 103185493 103185729 -52444391 - MIR SINE MIR 0 262 20 2 1372 234 305 23 106 chr4 103186392 103186524 -52443596 + MIRb SINE MIR 112 232 -36 2 1372 631 255 102 5 chr4 103186973 103187170 -52442950 + B3 SINE B2 1 216 0 3 1372 233 360 59 15 chr4 103187341 103187544 -52442576 + MIRb SINE MIR 38 242 -26 3 1372 352 277 25 119 chr4 103188860 103188888 -52441232 - B3 SINE B2 -34 182 161 3 1372 399 21 0 0 chr4 103188888 103188936 -52441184 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1372 404 277 25 119 chr4 103188936 103189108 -52441012 - B3A SINE B2 -56 160 1 3 1372 3029 244 66 39 chr4 103189205 103189959 -52440161 + RCHARR1 DNA MER1_type 6 802 -172 3 1372 396 59 0 0 chr4 103189959 103190010 -52440110 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1372 3029 244 66 39 chr4 103190010 103190199 -52439921 + RCHARR1 DNA MER1_type 803 974 0 3 1372 2277 172 239 33 chr4 103191267 103191719 -52438401 + Lx2B LINE L1 6412 6969 -89 3 1372 444 37 0 0 chr4 103191719 103191773 -52438347 + (GGA)n Simple_repeat Simple_repeat 2 55 0 3 1372 1983 172 239 33 chr4 103191773 103191806 -52438314 + Lx2B LINE L1 6970 6997 -61 3 1372 226 167 83 0 chr4 103191785 103191845 -52438275 + L1_Mus3 LINE L1 6570 6634 -4 3 1372 908 315 96 4 chr4 103192406 103192856 -52437264 + Lx8 LINE L1 6815 7305 -168 3 1372 203 355 55 0 chr4 103193747 103193857 -52436263 + L2b LINE L2 3259 3374 -1 3 1372 465 50 0 0 chr4 103194008 103194068 -52436052 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1372 656 265 7 0 chr4 103194103 103194239 -52435881 - B3A SINE B2 -60 138 2 3 1372 972 253 115 37 chr4 103194239 103194693 -52435427 - L1MB5 LINE L1 -33 6141 5652 3 1372 182 347 0 0 chr4 103194693 103194742 -52435378 + L2b LINE L2 3249 3297 -78 3 1372 353 222 0 12 chr4 103195438 103195520 -52434600 - B4A SINE B4 0 292 212 3 1372 357 256 23 23 chr4 103195520 103195692 -52434428 - Lx9 LINE L1 -15 7629 7458 3 1372 431 117 13 13 chr4 103195698 103195858 -52434262 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 1372 4239 241 70 28 chr4 103195858 103197074 -52433046 - Lx9 LINE L1 -170 7474 6086 3 1372 3720 43 0 0 chr4 103197074 103197515 -52432605 - L1Md_T LINE L1 0 6582 6142 3 1372 1859 336 85 53 chr4 103197515 103197812 -52432308 - Lx9 LINE L1 -1388 6085 5784 3 1372 495 237 159 6 chr4 103197918 103198075 -52432045 + ORR1C2 LTR MaLR 1 181 -193 3 1372 441 95 0 0 chr4 103198075 103198138 -52431982 + (TCCC)n Simple_repeat Simple_repeat 2 64 0 3 1372 962 150 77 15 chr4 103198138 103198287 -52431833 + ORR1C2 LTR MaLR 175 336 -48 3 1372 4613 29 0 0 chr4 103198287 103198811 -52431309 - L1Md_T LINE L1 0 6582 6059 3 1372 962 150 77 15 chr4 103198811 103198857 -52431263 + ORR1C2 LTR MaLR 337 382 -2 3 1372 490 310 0 14 chr4 103198963 103199110 -52431010 - B1F SINE Alu -2 147 3 3 1372 226 269 83 31 chr4 103199399 103199495 -52430625 - L1MB1 LINE L1 -52 6116 6016 3 1372 223 305 36 12 chr4 103199710 103199793 -52430327 - MIRb SINE MIR -93 175 91 3 1372 1080 45 0 0 chr4 103199796 103199930 -52430190 + (GA)n Simple_repeat Simple_repeat 1 134 0 3 1372 547 296 40 40 chr4 103200176 103200399 -52429721 + MIR SINE MIR 36 268 0 3 1372 224 326 151 11 chr4 103201038 103201224 -52428896 + L2a LINE L2 2294 2505 -914 3 1372 195 337 113 27 chr4 103201988 103202174 -52427946 + L2a LINE L2 3209 3410 -16 3 1372 244 264 0 0 chr4 103202783 103202836 -52427284 - MLT1H2 LTR MaLR -358 131 79 3 1372 270 0 0 0 chr4 103203359 103203389 -52426731 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1372 1136 64 0 19 chr4 103203958 103204117 -52426003 + B2_Mm2 SINE B2 1 156 -39 3 1372 429 36 0 0 chr4 103204404 103204459 -52425661 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1372 459 52 0 0 chr4 103204939 103204997 -52425123 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 3 1372 389 247 67 12 chr4 103205017 103205181 -52424939 + L1ME4a LINE L1 5952 6124 0 3 1372 449 264 155 0 chr4 103205292 103205421 -52424699 + RSINE1 SINE B4 3 151 -14 3 1372 616 196 6 32 chr4 103205655 103205813 -52424307 - Lx9 LINE L1 -9 7635 7482 3 1372 236 149 21 0 chr4 103206263 103206310 -52423810 + CT-rich Low_complexity Low_complexity 2 49 0 3 1372 232 317 0 0 chr4 103206341 103206401 -52423719 - ID4 SINE ID -19 64 5 3 1372 224 167 24 0 chr4 103206428 103206470 -52423650 + CT-rich Low_complexity Low_complexity 1 43 0 3 1372 4950 31 7 0 chr4 103206763 103207338 -52422782 - L1Md_F3 LINE L1 0 6584 6006 3 1372 539 175 26 9 chr4 103207338 103207453 -52422667 + L1Md_A LINE L1 632 748 -5976 3 1372 186 342 70 26 chr4 103208531 103208645 -52421475 - MIRb SINE MIR 0 268 150 3 1372 180 0 0 0 chr4 103208649 103208669 -52421451 + (CAT)n Simple_repeat Simple_repeat 3 22 0 3 1372 210 353 37 8 chr4 103210101 103210235 -52419885 - L4 LINE RTE -141 1888 1751 3 1372 1429 226 32 17 chr4 103210355 103210701 -52419419 - ORR1D1 LTR MaLR -7 367 17 3 1372 1614 62 144 9 chr4 103210724 103210953 -52419167 - L1_Mus1 LINE L1 0 6567 6308 3 1372 4207 107 7 3 chr4 103210953 103211571 -52418549 + MusHAL1 LINE L1 1191 1810 -902 3 1372 492 226 5 48 chr4 103211771 103211957 -52418163 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1372 1638 212 70 0 chr4 103212177 103212521 -52417599 - ORR1D2 LTR MaLR -2 368 1 3 1372 260 370 101 35 chr4 103212542 103212800 -52417320 - LTR33A_ LTR ERVL -5 526 252 3 1372 243 0 0 0 chr4 103213352 103213379 -52416741 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1372 312 338 121 33 chr4 103214244 103214595 -52415525 - MLT1E2 LTR MaLR -15 609 222 3 1372 441 184 0 0 chr4 103214643 103214730 -52415390 - PB1D10 SINE Alu -6 111 25 3 1372 183 319 65 11 chr4 103215082 103215174 -52414946 - MIRm SINE MIR -16 260 164 3 1372 886 134 0 40 chr4 103215258 103215406 -52414714 + B1_Mm SINE Alu 6 147 0 3 1372 235 63 73 37 chr4 103215406 103215488 -52414632 + (CAAAC)n Simple_repeat Simple_repeat 5 89 0 3 1372 292 354 0 17 chr4 103215650 103215765 -52414355 - Charlie10 DNA MER1_type -2630 192 80 3 1372 640 155 78 0 chr4 103218394 103218523 -52411597 + URR1B DNA MER1_type 86 224 -1 3 1372 761 240 107 0 chr4 103218793 103218989 -52411131 + B4A SINE B4 2 218 -74 3 1372 1814 116 9 67 chr4 103218984 103219325 -52410795 - ORR1A4 LTR MaLR -8 321 1 3 1372 276 191 41 68 chr4 103219325 103219397 -52410723 + B4A SINE B4 205 274 -18 3 1372 247 331 158 0 chr4 103219991 103220124 -52409996 + LTR33 LTR ERVL 362 515 0 3 1372 2116 200 2 12 chr4 103220411 103220821 -52409299 + MTD LTR MaLR 1 406 -13 3 1372 244 244 24 49 chr4 103220872 103220954 -52409166 - MIR SINE MIR -121 141 62 3 1372 255 331 115 0 chr4 103221171 103221310 -52408810 + MIR SINE MIR 37 191 -71 3 1372 298 325 112 15 chr4 103221337 103221534 -52408586 - LTR16B LTR ERVL -22 441 226 3 1372 342 290 70 13 chr4 103221801 103221958 -52408162 - MER31B LTR ERV1 -13 453 288 3 1372 1301 255 56 6 chr4 103221993 103222348 -52407772 - MTE2b LTR MaLR -1 378 6 3 1372 228 302 0 9 chr4 103223012 103223119 -52407001 + CT-rich Low_complexity Low_complexity 2 107 0 3 1372 2117 256 87 30 chr4 103223908 103224619 -52405501 + Lx8 LINE L1 6717 7468 -5 3 1372 199 356 0 11 chr4 103225981 103226069 -52404051 + L2c LINE L2 3041 3127 -260 3 1372 211 254 17 17 chr4 103226279 103226339 -52403781 + L2c LINE L2 3269 3328 -59 3 1372 213 180 48 16 chr4 103229260 103229322 -52400798 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 3 1372 316 353 10 26 chr4 103230374 103230566 -52399554 - MIR SINE MIR -58 204 16 3 1372 531 0 0 0 chr4 103230641 103230700 -52399420 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1372 214 314 14 14 chr4 103231402 103231473 -52398647 - MIR SINE MIR -163 99 29 3 1372 622 258 21 42 chr4 103231698 103231888 -52398232 - B3A SINE B2 -1 197 12 3 1372 1685 211 65 13 chr4 103233792 103234177 -52395943 + MTD LTR MaLR 15 419 0 3 1372 434 350 19 0 chr4 103234201 103234358 -52395762 + Tigger5 DNA MER2_type 72 231 -2175 3 1372 573 88 0 0 chr4 103234388 103234468 -52395652 + (TCTCCC)n Simple_repeat Simple_repeat 3 82 0 3 1372 885 157 7 0 chr4 103234469 103234609 -52395511 - B1_Mus1 SINE Alu -5 143 3 3 1372 204 158 0 0 chr4 103234899 103234937 -52395183 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 3 1372 340 286 110 35 chr4 103235103 103235248 -52394872 + MIRb SINE MIR 21 176 -100 3 1372 240 35 0 0 chr4 103237833 103237862 -52392258 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1372 1046 128 0 6 chr4 103238003 103238176 -52391944 + (TCTCC)n Simple_repeat Simple_repeat 5 176 0 3 1372 411 21 0 0 chr4 103238176 103238223 -52391897 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 3 1372 392 222 0 0 chr4 103238225 103238297 -52391823 - ID4 SINE ID -11 72 1 3 1372 209 275 130 24 chr4 103239539 103239662 -52390458 - MIR SINE MIR -87 175 40 3 1372 315 265 0 0 chr4 103240166 103240249 -52389871 + ID4 SINE ID 1 83 0 3 1372 579 278 59 29 chr4 103240402 103240606 -52389514 - B4A SINE B4 -81 211 2 3 1372 392 0 21 0 chr4 103241031 103241079 -52389041 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1372 414 0 0 0 chr4 103241505 103241551 -52388569 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1372 748 260 158 25 chr4 103242728 103243044 -52387076 - Lx8 LINE L1 0 7473 7116 3 1372 586 329 135 17 chr4 103243071 103243427 -52386693 - MLT2B2 LTR ERVL -117 398 1 3 1372 1018 272 41 86 chr4 103243656 103244074 -52386046 + MTD LTR MaLR 7 405 -14 3 1372 230 56 0 27 chr4 103245255 103245292 -52384828 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1372 315 0 0 0 chr4 103246058 103246093 -52384027 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3 1372 364 280 22 43 chr4 103246502 103246640 -52383480 + ID_B1 SINE B4 82 216 -8 3 1372 288 278 106 19 chr4 103247924 103248094 -52382026 + MLT1G1 LTR MaLR 70 301 -278 3 1372 251 365 99 26 chr4 103248088 103248240 -52381880 + MLT1G1 LTR MaLR 273 435 -113 3 1372 279 259 10 43 chr4 103249686 103249812 -52380308 - MIRb SINE MIR 0 262 138 3 1372 382 331 19 25 chr4 103251420 103251581 -52378539 - MIR SINE MIR -31 231 72 3 1372 285 355 24 6 chr4 103253498 103253665 -52376455 + MIRb SINE MIR 78 247 -21 3 1372 351 294 177 78 chr4 103254145 103254506 -52375614 + MLT1J1 LTR MaLR 48 444 0 4 1372 387 0 0 0 chr4 103255379 103255422 -52374698 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1372 410 306 90 56 chr4 103255445 103255712 -52374408 - B4A SINE B4 -14 278 3 4 1372 189 0 0 0 chr4 103255897 103255918 -52374202 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1372 867 301 98 32 chr4 103256094 103256444 -52373676 - L1MB2 LINE L1 -10 6168 5802 4 1372 947 279 21 18 chr4 103256444 103256729 -52373391 - B4A SINE B4 -5 287 2 4 1372 867 299 98 32 chr4 103256729 103256827 -52373293 - L1MB2 LINE L1 -370 5801 5687 4 1372 1345 242 83 31 chr4 103257102 103257259 -52372861 - ORR1D2 LTR MaLR -2 368 190 4 1372 1272 14 0 0 chr4 103257259 103257405 -52372715 + (GGAA)n Simple_repeat Simple_repeat 4 149 0 4 1372 1345 242 83 31 chr4 103257405 103257597 -52372523 - ORR1D2 LTR MaLR -181 189 1 4 1372 1385 309 71 20 chr4 103257645 103258183 -52371937 - Lx8 LINE L1 -185 7288 6724 4 1372 368 218 38 51 chr4 103258205 103258345 -52371775 - L1MB2 LINE L1 -896 5250 5126 4 1372 1054 218 10 15 chr4 103258345 103258550 -52371570 - B3 SINE B2 -12 204 1 4 1372 307 230 23 194 chr4 103258550 103258625 -52371495 - L1MB2 LINE L1 -1002 5138 5071 4 1372 232 83 42 0 chr4 103258775 103258823 -52371297 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1372 1065 302 37 15 chr4 103258993 103259399 -52370721 - L1MB2 LINE L1 -1237 4903 4489 4 1372 800 84 0 77 chr4 103259699 103259893 -52370227 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1372 651 127 6 39 chr4 103259910 103260066 -52370054 + (CA)n Simple_repeat Simple_repeat 1 151 0 4 1372 1226 98 15 20 chr4 103260132 103260329 -52369791 - L1_Mus4 LINE L1 0 6636 6441 4 1372 468 0 0 0 chr4 103260565 103260617 -52369503 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1372 261 0 0 0 chr4 103261272 103261301 -52368819 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1372 597 297 75 34 chr4 103261309 103261574 -52368546 - B4 SINE B4 -9 283 8 4 1372 399 21 0 0 chr4 103262351 103262399 -52367721 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1372 225 119 0 0 chr4 103262786 103262828 -52367292 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1372 26886 23 0 3 chr4 103262890 103266687 -52363433 - L1Md_T LINE L1 -1 6581 2794 4 1372 5413 74 4 3 chr4 103266684 103267401 -52362719 - L1Md_A LINE L1 -5567 1157 440 4 1372 265 280 39 29 chr4 103267829 103267932 -52362188 + MIRm SINE MIR 53 156 -120 4 1372 432 177 7 44 chr4 103268231 103268367 -52361753 + CT-rich Low_complexity Low_complexity 1 131 0 4 1372 7469 58 1 7 chr4 103268514 103269435 -52360685 + L1_Mus1 LINE L1 5652 6567 0 4 1372 183 80 0 0 chr4 103269437 103269462 -52360658 + (GAA)n Simple_repeat Simple_repeat 1 25 0 4 1372 280 185 0 0 chr4 103269543 103269597 -52360523 + MTEb LTR MaLR 1 54 -325 4 1372 228 306 47 0 chr4 103269597 103269628 -52360492 + MLT2B3 LTR ERVL 1 89 -465 4 1372 525 282 13 111 chr4 103269725 103270012 -52360108 + MTEb LTR MaLR 98 378 -1 4 1372 190 287 105 38 chr4 103270200 103270305 -52359815 + L3 LINE CR1 4351 4462 -27 4 1372 32970 82 15 10 chr4 103270454 103275759 -52354361 + L1Md_F2 LINE L1 258 5586 -297 4 1372 7768 66 2 2 chr4 103275760 103276742 -52353378 + L1Md_F2 LINE L1 5588 6569 -13 4 1372 228 143 0 0 chr4 103276763 103276805 -52353315 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1372 183 394 9 9 chr4 103276986 103277091 -52353029 - L2b LINE L2 -18 3357 3253 4 1372 182 277 0 0 chr4 103277334 103277381 -52352739 + L2c LINE L2 3324 3370 -17 4 1372 852 336 41 76 chr4 103277579 103278005 -52352115 - MLT1I LTR MaLR 0 411 1 4 1372 1140 75 0 13 chr4 103279168 103279317 -52350803 - B1_Mus1 SINE Alu 0 148 2 4 1372 22 0 0 0 chr4 103279554 103279576 -52350544 + AT_rich Low_complexity Low_complexity 1 22 0 4 1372 416 208 198 0 chr4 103279603 103279709 -52350411 - RSINE1 SINE B4 -28 137 11 4 1372 1037 264 81 11 chr4 103279871 103280143 -52349977 + B4A SINE B4 2 292 0 4 1372 432 205 6 13 chr4 103280151 103280309 -52349811 + (CA)n Simple_repeat Simple_repeat 1 157 0 4 1372 6519 14 0 0 chr4 103280451 103281180 -52348940 + L1Md_T LINE L1 4858 5586 -297 4 1372 8543 37 0 0 chr4 103281180 103282176 -52347944 + L1Md_T LINE L1 5587 6582 0 4 1372 240 238 21 106 chr4 103282479 103282573 -52347547 + MIRb SINE MIR 117 202 -66 4 1372 236 373 21 10 chr4 103283161 103283285 -52346835 - MIRc SINE MIR -55 213 86 4 1372 344 267 83 33 chr4 103283628 103283748 -52346372 - MIR3 SINE MIR -32 176 51 4 1373 282 310 13 66 chr4 103285376 103285528 -52344592 - L2c LINE L2 -1 3386 3243 4 1373 410 211 35 7 chr4 103287579 103287722 -52342398 + GA-rich Low_complexity Low_complexity 3 149 0 4 1373 226 246 165 39 chr4 103287722 103287849 -52342271 + MLT1K LTR MaLR 400 542 -53 4 1373 243 301 162 11 chr4 103288346 103288550 -52341570 + MIRb SINE MIR 9 239 -29 4 1373 293 289 152 3 chr4 103288592 103288728 -52341392 + MER63B DNA AcHobo 265 413 -23 4 1373 221 440 0 0 chr4 103289009 103289084 -52341036 - ID4_ SINE ID -3 80 6 4 1373 233 341 152 11 chr4 103289107 103289199 -52340921 - PB1D10 SINE Alu -10 107 3 4 1373 187 243 36 108 chr4 103290335 103290418 -52339702 + L2b LINE L2 2730 2806 -613 4 1373 1209 55 0 0 chr4 103290426 103290572 -52339548 - B1_Mm SINE Alu 0 147 2 4 1373 191 358 24 24 chr4 103290700 103290823 -52339297 + L2b LINE L2 2944 3066 -309 4 1373 1636 224 85 5 chr4 103290909 103291286 -52338834 - MTD LTR MaLR -7 412 6 4 1373 250 325 0 0 chr4 103291569 103291649 -52338471 - MIRb SINE MIR -68 200 121 4 1373 250 205 123 37 chr4 103292088 103292169 -52337951 - MER45R DNA Tip100 -1168 413 326 4 1373 423 43 43 0 chr4 103293341 103293411 -52336709 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1373 378 0 0 0 chr4 103293539 103293581 -52336539 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1373 221 0 163 0 chr4 103294400 103294449 -52335671 + (CTGGGG)n Simple_repeat Simple_repeat 6 62 0 4 1373 257 360 20 20 chr4 103295370 103295523 -52334597 + L2 LINE L2 2787 2939 -480 4 1373 220 224 17 17 chr4 103296282 103296341 -52333779 + L2c LINE L2 3267 3325 -62 4 1373 564 228 15 23 chr4 103296476 103296606 -52333514 - B1_Mur4 SINE Alu -6 144 16 4 1373 40 91 0 0 chr4 103296619 103296729 -52333391 + AT_rich Low_complexity Low_complexity 1 110 0 4 1373 208 369 21 17 chr4 103297062 103297201 -52332919 - MIRm SINE MIR -113 163 22 4 1373 1829 178 53 6 chr4 103297334 103297691 -52332429 + ORR1D1 LTR MaLR 1 374 0 4 1373 192 200 0 0 chr4 103297699 103297754 -52332366 + T-rich Low_complexity Low_complexity 1 55 0 4 1373 1172 62 7 0 chr4 103297755 103297901 -52332219 - B1_Mm SINE Alu 0 147 1 4 1373 358 308 14 36 chr4 103298607 103298745 -52331375 - MIR SINE MIR -126 136 2 4 1373 252 266 31 0 chr4 103299007 103299071 -52331049 + (CACCAT)n Simple_repeat Simple_repeat 6 71 0 4 1373 198 0 0 0 chr4 103299084 103299106 -52331014 + (CAG)n Simple_repeat Simple_repeat 3 24 0 4 1373 442 183 17 0 chr4 103300947 103301062 -52329058 + GA-rich Low_complexity Low_complexity 2 118 0 4 1373 422 365 122 28 chr4 103301091 103301491 -52328629 - L1MC LINE L1 -2062 5820 5383 4 1373 379 286 68 96 chr4 103301964 103302184 -52327936 - Tigger15a DNA TcMar -202 513 300 4 1373 421 282 68 27 chr4 103302746 103302892 -52327228 - MLT1J LTR MaLR -354 158 7 4 1373 207 100 0 0 chr4 103304807 103304837 -52325283 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1373 188 348 46 97 chr4 103304874 103305049 -52325071 + L2c LINE L2 3022 3187 -200 4 1373 207 213 0 25 chr4 103306085 103306139 -52323981 - L2c LINE L2 -3 3423 3338 4 1373 217 70 0 65 chr4 103306247 103306293 -52323827 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1373 203 0 37 0 chr4 103306330 103306357 -52323763 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1373 1287 213 172 31 chr4 103309754 103310074 -52320046 + MTD LTR MaLR 5 373 -46 4 1373 2549 164 10 5 chr4 103310074 103310485 -52319635 - MTC LTR MaLR 0 421 9 4 1373 237 328 0 0 chr4 103310438 103310502 -52319618 + MTD LTR MaLR 356 419 0 4 1373 201 333 27 0 chr4 103310561 103310636 -52319484 + CT-rich Low_complexity Low_complexity 5 81 0 4 1373 381 271 135 51 chr4 103310814 103311050 -52319070 - L2a LINE L2 -1 3425 3145 4 1373 255 277 0 0 chr4 103311083 103311148 -52318972 + (TTCTG)n Simple_repeat Simple_repeat 4 68 0 4 1373 230 206 0 29 chr4 103311687 103311757 -52318363 + T-rich Low_complexity Low_complexity 3 70 0 4 1373 261 295 94 43 chr4 103311860 103311977 -52318143 + MIRb SINE MIR 42 164 -104 4 1373 649 91 40 32 chr4 103312074 103312199 -52317921 - Lx2 LINE L1 -1 6996 6871 4 1373 374 0 22 0 chr4 103312261 103312307 -52317813 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1373 297 86 52 0 chr4 103312308 103312366 -52317754 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1373 477 325 66 16 chr4 103312886 103313130 -52316990 - MIR SINE MIR -4 258 3 4 1373 745 343 81 46 chr4 103314888 103315233 -52314887 - ORR1E LTR MaLR 0 359 3 4 1373 468 0 0 0 chr4 103315350 103315402 -52314718 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1373 261 0 0 0 chr4 103315402 103315430 -52314690 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1373 261 172 0 0 chr4 103315432 103315496 -52314624 + GA-rich Low_complexity Low_complexity 1 64 0 4 1373 548 202 48 0 chr4 103315556 103315660 -52314460 - RSINE1 SINE B4 -29 136 28 4 1373 206 352 26 44 chr4 103316552 103316665 -52313455 + MIR SINE MIR 143 253 -9 4 1373 187 250 19 0 chr4 103316768 103316820 -52313300 + MIR SINE MIR 114 166 -96 4 1373 247 184 20 0 chr4 103316973 103317022 -52313098 - Lx6 LINE L1 -19 7441 7392 4 1373 2893 41 6 9 chr4 103317022 103317369 -52312751 + MTA_Mm LTR MaLR 1 346 0 4 1373 6180 90 70 28 chr4 103317369 103318914 -52311206 + MTA_Mm-int LTR MaLR 1 1366 -426 4 1373 3202 53 8 2 chr4 103318914 103319308 -52310812 + MTA_Mm LTR MaLR 1 396 0 4 1373 519 230 9 17 chr4 103319308 103319423 -52310697 - Lx6 LINE L1 -64 7396 7283 4 1373 327 306 84 101 chr4 103319427 103319772 -52310348 + ORR1E LTR MaLR 19 357 -2 4 1373 371 54 54 0 chr4 103319938 103319994 -52310126 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1373 1271 101 67 0 chr4 103321807 103321985 -52308135 - B2_Mm2 SINE B2 -5 190 1 4 1373 326 296 139 0 chr4 103322282 103322397 -52307723 + MIRb SINE MIR 96 226 -42 4 1373 321 125 0 0 chr4 103323051 103323107 -52307013 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1373 493 240 21 0 chr4 103323496 103323592 -52306528 + RSINE1 SINE B4 47 144 -21 5 1373 43 0 0 0 chr4 103323613 103323656 -52306464 + AT_rich Low_complexity Low_complexity 1 43 0 5 1373 184 348 61 41 chr4 103323697 103323844 -52306276 + MER5B DNA MER1_type 26 175 -3 5 1373 186 43 0 0 chr4 103324198 103324221 -52305899 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1373 181 276 91 13 chr4 103324339 103324416 -52305704 + MIRb SINE MIR 159 241 -27 5 1373 260 248 111 34 chr4 103326535 103326652 -52303468 - Lx9 LINE L1 -59 7585 7460 5 1373 396 205 23 12 chr4 103326667 103326840 -52303280 + (TA)n Simple_repeat Simple_repeat 1 175 0 5 1373 323 212 53 126 chr4 103326841 103326992 -52303128 - L1MCa LINE L1 -4548 1960 1821 5 1373 334 358 6 63 chr4 103328308 103328466 -52301654 + MIRb SINE MIR 101 249 -19 5 1373 578 310 69 31 chr4 103329193 103329483 -52300637 - L5 LINE RTE -24 2241 1941 5 1373 229 353 41 2 chr4 103330351 103330441 -52299679 + MIRc SINE MIR 4 100 -168 5 1373 5030 128 103 6 chr4 103331345 103332217 -52297903 + RMER17B LTR ERVK 2 958 0 5 1373 205 302 36 42 chr4 103332475 103332641 -52297479 + (CAGG)n Simple_repeat Simple_repeat 2 166 0 5 1373 191 353 11 34 chr4 103333000 103333088 -52297032 + MIR SINE MIR 19 104 -158 5 1373 245 325 36 0 chr4 103333578 103333661 -52296459 - MLT1H LTR MaLR -350 199 114 5 1373 30 0 0 0 chr4 103335191 103335221 -52294899 + AT_rich Low_complexity Low_complexity 1 30 0 5 1373 345 93 0 0 chr4 103335610 103335664 -52294456 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1373 1237 197 9 0 chr4 103335751 103335974 -52294146 + URR1B DNA MER1_type 1 225 0 5 1373 279 0 0 0 chr4 103336277 103336308 -52293812 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1373 679 326 71 19 chr4 103336367 103336636 -52293484 - B4A SINE B4 -6 286 4 5 1373 297 253 31 31 chr4 103337165 103337263 -52292857 + MER5A DNA MER1_type 92 189 0 5 1373 9107 14 0 0 chr4 103337718 103339452 -52290668 - L1Md_T LINE L1 0 6582 4849 5 1373 234 262 18 60 chr4 103339876 103340001 -52290119 - MIRc SINE MIR 0 268 139 5 1373 362 309 61 10 chr4 103340394 103340590 -52289530 - MIR SINE MIR -10 252 47 5 1373 207 162 0 0 chr4 103341232 103341269 -52288851 + (CAGAA)n Simple_repeat Simple_repeat 4 40 0 5 1373 275 327 115 45 chr4 103342172 103342329 -52287791 + MLT1J2 LTR MaLR 200 367 -81 5 1373 608 22 22 22 chr4 103342400 103342492 -52287628 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 5 1373 24 0 0 0 chr4 103342547 103342571 -52287549 + AT_rich Low_complexity Low_complexity 1 24 0 5 1373 255 274 116 0 chr4 103342663 103342758 -52287362 - MIR SINE MIR -68 194 89 5 1373 1848 270 98 79 chr4 103342828 103343139 -52286981 + Lx8 LINE L1 6590 6870 -603 5 1373 584 260 63 29 chr4 103343139 103343313 -52286807 - B3A SINE B2 -18 180 1 5 1373 1848 270 98 79 chr4 103343313 103343866 -52286254 + Lx8 LINE L1 6871 7471 -2 5 1373 254 331 115 42 chr4 103343956 103344148 -52285972 - MLT1K LTR MaLR -12 583 378 5 1373 2151 168 85 3 chr4 103346297 103346684 -52283436 + MTC LTR MaLR 3 421 0 5 1373 555 225 0 18 chr4 103347579 103347692 -52282428 - B1_Mur1 SINE Alu 0 149 39 5 1373 270 292 65 9 chr4 103348897 103349004 -52281116 - L1MB3 LINE L1 -2 6181 6069 5 1373 470 193 88 0 chr4 103349032 103349146 -52280974 - RMER12B LTR ERVK 0 1404 1281 5 1373 357 159 0 0 chr4 103349152 103349215 -52280905 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1373 401 256 107 57 chr4 103349215 103349281 -52280839 - RMER12B LTR ERVK -318 1254 1185 5 1373 414 0 0 0 chr4 103349281 103349327 -52280793 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1373 3546 167 11 11 chr4 103349327 103350029 -52280091 - RMER12B LTR ERVK -155 1249 568 5 1373 290 189 0 0 chr4 103350021 103350074 -52280046 - RMER12B LTR ERVK -1351 53 1 5 1373 23 0 0 0 chr4 103350507 103350530 -52279590 + AT_rich Low_complexity Low_complexity 1 23 0 5 1373 308 248 67 92 chr4 103350541 103350661 -52279459 - RSINE1 SINE B4 0 165 49 5 1373 227 254 51 0 chr4 103351097 103351156 -52278964 + MIRc SINE MIR 109 170 -98 5 1373 306 0 0 0 chr4 103352269 103352303 -52277817 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1373 811 298 21 6 chr4 103353698 103354025 -52276095 + L1MA4 LINE L1 5544 5875 -425 5 1373 785 278 48 18 chr4 103354270 103354497 -52275623 + B4A SINE B4 1 234 -58 5 1373 504 32 0 0 chr4 103354555 103354617 -52275503 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 5 1373 1047 217 19 0 chr4 103354939 103355146 -52274974 - B3 SINE B2 -5 211 1 5 1373 2351 202 74 126 chr4 103355583 103355893 -52274227 - RLTR17 LTR ERVK 0 692 357 5 1373 1179 61 0 7 chr4 103355893 103356041 -52274079 + B1_Mm SINE Alu 1 147 0 5 1373 2351 202 74 126 chr4 103356041 103356460 -52273660 - RLTR17 LTR ERVK -336 356 1 5 1373 378 313 107 67 chr4 103357076 103357254 -52272866 - B3A SINE B2 -13 185 1 5 1373 192 77 0 0 chr4 103357266 103357292 -52272828 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1373 446 359 19 7 chr4 103357300 103357454 -52272666 - RSINE1 SINE B4 -8 157 2 5 1373 306 0 0 0 chr4 103358332 103358366 -52271754 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1373 751 176 60 208 chr4 103358984 103359249 -52270871 + URR1A DNA MER1_type 1 226 0 5 1373 320 279 160 22 chr4 103359602 103359833 -52270287 + L1M4 LINE L1 2581 2843 -3303 5 1373 917 316 59 72 chr4 103359953 103360578 -52269542 - Lx8 LINE L1 0 7473 6857 5 1373 440 264 30 18 chr4 103360583 103360729 -52269391 + Lx8 LINE L1 6523 6814 -830 5 1373 915 312 112 16 chr4 103360751 103361324 -52268796 + L1M4 LINE L1 3346 3973 -2173 5 1373 261 315 54 9 chr4 103361515 103361627 -52268493 + MER58C DNA MER1_type 97 213 -2 5 1373 468 51 0 0 chr4 103361742 103361801 -52268319 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1373 339 25 0 0 chr4 103361808 103361848 -52268272 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1373 694 262 71 24 chr4 103362051 103362305 -52267815 - L1MA6 LINE L1 -27 6273 6008 5 1373 456 311 91 88 chr4 103362682 103363067 -52267053 - MLT1B LTR MaLR -2 388 3 5 1373 438 94 0 0 chr4 103363072 103363136 -52266984 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1373 370 284 42 17 chr4 103363889 103364007 -52266113 - B1F1 SINE Alu -28 121 1 5 1373 388 264 26 71 chr4 103364486 103364641 -52265479 - MER102c DNA MER1_type -80 251 104 5 1373 219 69 0 0 chr4 103364897 103364926 -52265194 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 5 1373 449 265 164 64 chr4 103364951 103365249 -52264871 + L1M5 LINE L1 5315 5642 -522 5 1373 608 38 13 0 chr4 103365249 103365328 -52264792 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 5 1373 299 311 92 44 chr4 103365475 103365791 -52264329 + L1MB8 LINE L1 5846 6176 -2 5 1373 1415 84 21 5 chr4 103365904 103366095 -52264025 + B2_Mm2 SINE B2 1 194 -1 5 1373 407 18 36 0 chr4 103367320 103367375 -52262745 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 5 1373 411 21 0 0 chr4 103367410 103367458 -52262662 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1373 291 54 0 0 chr4 103369620 103369657 -52260463 + (TCC)n Simple_repeat Simple_repeat 3 39 0 5 1373 474 233 164 0 chr4 103369658 103369774 -52260346 - B1F SINE Alu -14 135 1 5 1373 230 316 92 0 chr4 103369946 103370044 -52260076 + MIR SINE MIR 74 180 -82 5 1373 185 299 45 0 chr4 103372692 103372759 -52257361 + L2a LINE L2 3340 3409 -17 5 1373 911 124 80 0 chr4 103374360 103374497 -52255623 - B1_Mus1 SINE Alu 0 148 1 5 1373 503 257 90 11 chr4 103374812 103374989 -52255131 + LTR50 LTR ERVL 7 197 -598 5 1373 317 336 48 7 chr4 103375056 103375203 -52254917 - MER20 DNA MER1_type -62 157 5 5 1373 420 181 0 0 chr4 103375812 103375895 -52254225 + (TGAA)n Simple_repeat Simple_repeat 2 84 0 5 1373 278 372 0 9 chr4 103376599 103376713 -52253407 + MIRc SINE MIR 128 240 -28 5 1373 184 258 71 61 chr4 103376727 103376826 -52253294 - L2a LINE L2 -5 3421 3322 5 1373 315 127 0 0 chr4 103378029 103378092 -52252028 + (CAA)n Simple_repeat Simple_repeat 2 64 0 5 1373 570 290 0 61 chr4 103378490 103378637 -52251483 + RSINE1 SINE B4 11 148 -17 5 1373 428 248 7 0 chr4 103379558 103379707 -52250413 + GA-rich Low_complexity Low_complexity 2 151 0 5 1373 235 240 27 0 chr4 103379726 103379801 -52250319 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 1373 315 0 0 0 chr4 103380590 103380625 -52249495 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1373 351 0 0 0 chr4 103380625 103380663 -52249457 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1373 210 171 0 0 chr4 103380664 103380705 -52249415 + CT-rich Low_complexity Low_complexity 2 42 0 5 1373 239 241 19 0 chr4 103380743 103380797 -52249323 - B3A SINE B2 -45 153 99 5 1373 456 280 26 102 chr4 103380975 103381162 -52248958 - L1M2 LINE L1 -652 5660 5488 5 1373 681 257 0 0 chr4 103381162 103381310 -52248810 - B1_Mur1 SINE Alu -1 148 1 5 1373 456 280 26 102 chr4 103381310 103381388 -52248732 - L1M2 LINE L1 -825 5487 5415 5 1373 321 250 76 25 chr4 103381322 103381441 -52248679 + L1MA9 LINE L1 5659 5783 -385 5 1373 492 284 70 102 chr4 103381493 103381964 -52248156 + L1MA9 LINE L1 5783 6238 -74 5 1373 302 45 0 22 chr4 103381982 103382027 -52248093 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 5 1373 271 317 92 38 chr4 103382385 103382516 -52247604 + ORR1E LTR MaLR 60 197 -162 5 1373 903 145 0 17 chr4 103382969 103383144 -52246976 + CT-rich Low_complexity Low_complexity 2 173 0 5 1373 334 303 135 6 chr4 103383412 103383568 -52246552 + MIRb SINE MIR 78 253 -15 5 1373 180 265 0 0 chr4 103383607 103383656 -52246464 + MIRc SINE MIR 206 254 -14 5 1373 207 88 29 0 chr4 103384792 103384826 -52245294 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1373 413 333 32 16 chr4 103384868 103385054 -52245066 - MER5A DNA MER1_type 0 189 1 5 1373 243 0 0 0 chr4 103385504 103385531 -52244589 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1373 273 330 27 0 chr4 103386999 103387111 -52243009 - Tigger5 DNA MER2_type 0 2406 2292 6 1373 352 354 60 51 chr4 103387110 103387345 -52242775 - Tigger5 DNA MER2_type -2166 240 4 6 1373 288 0 0 0 chr4 103388203 103388235 -52241885 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 1373 372 262 18 27 chr4 103388314 103388424 -52241696 + MTD LTR MaLR 1 109 -310 6 1373 332 257 39 60 chr4 103389716 103389898 -52240222 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 6 1373 837 330 63 8 chr4 103390317 103390711 -52239409 - Lx8 LINE L1 -161 7312 6897 6 1373 195 336 59 68 chr4 103390914 103391032 -52239088 + MIRb SINE MIR 7 123 -145 6 1373 503 294 130 6 chr4 103392149 103392310 -52237810 + B3A SINE B2 1 181 -17 6 1373 217 226 0 36 chr4 103393899 103393954 -52236166 - L2b LINE L2 -79 3296 3244 6 1373 472 347 0 7 chr4 103394204 103394349 -52235771 + RSINE1 SINE B4 14 157 -8 6 1373 651 103 0 0 chr4 103394366 103394463 -52235657 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 6 1373 1037 142 0 0 chr4 103394463 103394611 -52235509 - B1_Mus1 SINE Alu 0 148 1 6 1373 487 244 63 0 chr4 103396399 103396526 -52233594 + RSINE1 SINE B4 12 146 -19 6 1373 224 294 175 10 chr4 103396744 103396847 -52233273 - MIR SINE MIR -142 120 1 6 1373 231 61 0 0 chr4 103397158 103397191 -52232929 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 6 1373 1143 125 129 5 chr4 103397706 103397907 -52232213 + URR1A DNA MER1_type 1 226 0 6 1373 443 266 26 9 chr4 103398323 103398437 -52231683 + PB1D10 SINE Alu 1 116 -1 6 1373 777 76 0 0 chr4 103400603 103400708 -52229412 + (TCCCC)n Simple_repeat Simple_repeat 3 107 0 6 1373 432 0 0 0 chr4 103402806 103402854 -52227266 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1373 231 250 105 59 chr4 103403269 103403422 -52226698 - MER3 DNA MER1_type -19 190 31 6 1373 242 320 23 76 chr4 103403632 103403764 -52226356 - RMER10B LTR ERVL -2 396 272 6 1373 209 321 12 0 chr4 103404011 103404092 -52226028 + MIR SINE MIR 153 234 -28 6 1373 310 143 15 45 chr4 103405308 103405374 -52224746 + RLTR23 LTR ERV1 333 396 -34 6 1373 377 298 98 8 chr4 103405463 103405585 -52224535 + B4A SINE B4 5 137 -155 6 1373 268 281 0 109 chr4 103405637 103405729 -52224391 + RSINE1 SINE B4 83 164 -1 6 1373 24 0 0 0 chr4 103408230 103408254 -52221866 + AT_rich Low_complexity Low_complexity 1 24 0 6 1373 337 304 20 20 chr4 103408403 103408551 -52221569 - L2a LINE L2 0 3426 3279 6 1373 248 346 84 37 chr4 103408668 103408965 -52221155 - L2a LINE L2 -382 3037 2727 6 1373 207 203 0 0 chr4 103409046 103409105 -52221015 + GA-rich Low_complexity Low_complexity 2 60 0 6 1373 785 239 19 0 chr4 103409247 103409406 -52220714 + B3A SINE B2 1 162 -36 6 1373 180 0 0 0 chr4 103409410 103409430 -52220690 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1373 252 0 0 0 chr4 103409581 103409609 -52220511 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1373 205 272 151 11 chr4 103409838 103409931 -52220189 - MIRb SINE MIR -156 112 7 6 1373 203 0 0 36 chr4 103410589 103410617 -52219503 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 6 1373 227 298 74 8 chr4 103411632 103411754 -52218366 - MER5B DNA MER1_type -2 176 47 6 1373 247 323 97 21 chr4 103412796 103412948 -52217172 + MIRb SINE MIR 65 226 -42 6 1373 474 65 0 0 chr4 103413139 103413201 -52216919 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1373 203 0 0 36 chr4 103413300 103413328 -52216792 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1373 2470 99 8 13 chr4 103415083 103415462 -52214658 + MTB_Mm LTR MaLR 29 405 -2 6 1374 597 300 61 55 chr4 103416585 103416913 -52213207 + L1MB7 LINE L1 5569 5898 -286 6 1374 595 277 0 0 chr4 103417006 103417143 -52212977 - RSINE1 SINE B4 -17 148 12 6 1374 324 0 0 0 chr4 103417237 103417273 -52212847 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1374 1642 211 19 33 chr4 103417775 103418142 -52211978 - ORR1D1 LTR MaLR -12 362 1 6 1374 605 311 63 14 chr4 103418587 103418949 -52211171 - MLT1B LTR MaLR -10 380 1 6 1374 553 243 77 68 chr4 103420100 103420334 -52209786 - MTEb LTR MaLR -13 366 131 6 1374 2256 311 86 42 chr4 103420340 103421312 -52208808 - Lx8 LINE L1 -215 7258 6244 6 1374 477 336 20 0 chr4 103421372 103421518 -52208602 - B1F SINE Alu 0 149 1 6 1374 1098 191 60 0 chr4 103421543 103421742 -52208378 - B3 SINE B2 -5 211 1 6 1374 228 378 42 24 chr4 103421825 103421993 -52208127 + Tigger15a DNA TcMar 106 276 -439 6 1374 424 299 17 22 chr4 103422223 103422404 -52207716 - RMER15 LTR ERVL -40 535 356 6 1374 203 313 126 26 chr4 103422895 103423046 -52207074 + MIR SINE MIR 84 249 -13 6 1374 760 238 35 69 chr4 103423115 103423318 -52206802 - B3A SINE B2 -1 197 2 6 1374 267 247 24 36 chr4 103423465 103423549 -52206571 + MER58B DNA MER1_type 256 338 -3 6 1374 285 324 21 14 chr4 103423568 103423709 -52206411 + MER5A1 DNA MER1_type 25 166 0 6 1374 561 312 72 30 chr4 103424090 103424424 -52205696 - LTR33A_ LTR ERVL 0 531 184 6 1374 193 348 84 30 chr4 103426018 103426184 -52203936 + MIR SINE MIR 64 238 -24 6 1374 249 298 128 0 chr4 103428612 103428706 -52201414 + L2c LINE L2 3281 3386 -1 6 1374 739 5 111 0 chr4 103429190 103429398 -52200722 + (GA)n Simple_repeat Simple_repeat 1 230 0 6 1374 196 362 43 0 chr4 103430443 103430537 -52199583 - MIRc SINE MIR -106 162 65 6 1374 208 111 0 53 chr4 103431391 103431429 -52198691 + T-rich Low_complexity Low_complexity 3 38 0 6 1374 1263 86 11 3 chr4 103431970 103432320 -52197800 + (TG)n Simple_repeat Simple_repeat 1 352 0 6 1374 255 31 0 0 chr4 103432819 103432851 -52197269 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1374 286 271 0 14 chr4 103432959 103433030 -52197090 + tRNA-Ala-GCY_ tRNA tRNA 1 70 -5 6 1374 261 0 0 0 chr4 103433564 103433593 -52196527 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 6 1374 221 326 127 15 chr4 103435915 103436049 -52194071 - L2a LINE L2 0 3426 3278 6 1374 451 251 83 72 chr4 103436520 103436700 -52193420 + B3A SINE B2 1 182 -16 6 1374 1965 162 115 27 chr4 103436742 103437185 -52192935 - Lx9 LINE L1 -1 7643 7162 6 1374 292 337 35 41 chr4 103437599 103437769 -52192351 - MIR SINE MIR -10 252 84 6 1374 208 343 20 0 chr4 103438524 103438623 -52191497 + CT-rich Low_complexity Low_complexity 2 102 0 6 1374 318 288 60 30 chr4 103439586 103439754 -52190366 + MIR SINE MIR 45 217 -45 6 1374 195 42 0 0 chr4 103440791 103440815 -52189305 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1374 513 233 25 25 chr4 103440941 103441060 -52189060 + B3 SINE B2 2 120 -96 6 1374 351 0 0 0 chr4 103441062 103441101 -52189019 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1374 522 0 0 0 chr4 103441101 103441158 -52188962 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1374 289 301 79 21 chr4 103442841 103443031 -52187089 + MIR SINE MIR 24 224 -38 6 1374 527 28 42 0 chr4 103443527 103443598 -52186522 + (TCTCCC)n Simple_repeat Simple_repeat 4 77 0 6 1374 196 284 30 0 chr4 103443599 103443666 -52186454 + MIR SINE MIR 145 213 -49 6 1374 420 332 46 43 chr4 103443787 103444067 -52186053 + L2a LINE L2 3146 3426 0 6 1374 261 0 0 0 chr4 103444428 103444457 -52185663 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1374 187 244 0 0 chr4 103444898 103444943 -52185177 + L2 LINE L2 2505 2549 -870 6 1374 220 356 45 8 chr4 103445853 103445986 -52184134 + MIRb SINE MIR 68 205 -63 6 1374 200 277 158 14 chr4 103447169 103447308 -52182812 - L3 LINE CR1 -212 4277 4119 6 1374 486 320 11 22 chr4 103447396 103447581 -52182539 + RMER30 DNA MER1_type 11 193 -9 6 1374 257 329 66 77 chr4 103448552 103448733 -52181387 + MIR SINE MIR 63 241 -21 6 1374 399 21 0 0 chr4 103448754 103448802 -52181318 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1374 506 305 78 11 chr4 103448813 103448992 -52181128 - B4A SINE B4 -44 248 58 6 1374 402 341 30 23 chr4 103449091 103449223 -52180897 - RSINE1 SINE B4 -32 133 1 6 1374 218 216 72 0 chr4 103449226 103449358 -52180762 + (TATAA)n Simple_repeat Simple_repeat 1 141 0 6 1374 470 308 106 9 chr4 103449475 103449701 -52180419 - B4A SINE B4 -44 248 1 6 1374 342 231 13 0 chr4 103450174 103450252 -52179868 - ID4 SINE ID -2 81 3 6 1374 317 220 2 16 chr4 103450663 103450749 -52179371 + L1MA9 LINE L1 6055 6139 -152 6 1374 359 184 0 0 chr4 103450795 103450867 -52179253 + L1MA9 LINE L1 6068 6139 -152 6 1374 183 103 0 0 chr4 103451045 103451074 -52179046 + L2b LINE L2 3328 3356 -19 6 1374 196 342 0 0 chr4 103451099 103451172 -52178948 + MIRb SINE MIR 173 245 -23 6 1374 205 338 25 0 chr4 103451898 103451978 -52178142 - MIRc SINE MIR 0 268 187 6 1374 219 11 0 156 chr4 103452312 103452421 -52177699 + (GTATG)n Simple_repeat Simple_repeat 5 96 0 6 1374 1452 201 46 17 chr4 103452508 103452858 -52177262 + ORR1D1 LTR MaLR 15 374 0 6 1374 419 269 97 51 chr4 103453434 103453610 -52176510 + MLT1C LTR MaLR 1 184 -283 6 1374 588 246 68 34 chr4 103453630 103453866 -52176254 + MLT1C LTR MaLR 224 467 0 6 1374 317 345 0 0 chr4 103454956 103455066 -52175054 + MIR SINE MIR 5 114 -148 6 1374 372 322 64 20 chr4 103455417 103455620 -52174500 - MIR SINE MIR -26 236 25 6 1374 1819 188 85 73 chr4 103456770 103457183 -52172937 - MTC LTR MaLR 0 421 4 6 1374 580 298 163 15 chr4 103457387 103457724 -52172396 - MLT1C LTR MaLR -29 438 52 7 1374 226 290 61 51 chr4 103457991 103458089 -52172031 - LTR33 LTR ERVL -1 514 416 7 1374 353 324 139 12 chr4 103458820 103459164 -52170956 - L2a LINE L2 -68 3358 2971 7 1374 493 210 92 0 chr4 103461068 103461187 -52168933 - MTEa LTR MaLR 0 379 250 7 1374 1123 253 10 38 chr4 103461193 103461481 -52168639 - MTEa LTR MaLR -96 283 4 7 1374 342 0 0 0 chr4 103462394 103462432 -52167688 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 7 1374 320 284 22 11 chr4 103462768 103462857 -52167263 - MIRb SINE MIR -141 127 38 7 1374 266 342 77 10 chr4 103465006 103465201 -52164919 - LTR33A LTR ERVL -7 513 306 7 1374 224 319 60 25 chr4 103466370 103466525 -52163595 + MIR SINE MIR 2 154 -114 7 1374 351 303 63 0 chr4 103468070 103468212 -52161908 - MIR SINE MIR -5 257 107 7 1374 441 322 132 30 chr4 103468465 103468836 -52161284 - MER74A LTR ERVL -95 463 55 7 1374 369 0 0 0 chr4 103469297 103469338 -52160782 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1374 746 65 16 31 chr4 103470560 103470688 -52159432 + (CATATA)n Simple_repeat Simple_repeat 4 129 0 7 1374 211 268 0 18 chr4 103470786 103470843 -52159277 - B1_Mm SINE Alu -1 146 91 7 1374 304 267 108 51 chr4 103471511 103471669 -52158451 + MIR SINE MIR 86 252 -10 7 1374 396 0 0 0 chr4 103472434 103472478 -52157642 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1374 1481 45 17 0 chr4 103472488 103472665 -52157455 + B2_Mm2 SINE B2 2 181 -14 7 1374 215 72 0 67 chr4 103472665 103472688 -52157432 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1374 1210 61 0 0 chr4 103472688 103472836 -52157284 - B1_Mus1 SINE Alu 0 148 1 7 1374 215 72 0 67 chr4 103472836 103472857 -52157263 + (T)n Simple_repeat Simple_repeat 1 18 0 7 1374 277 203 17 0 chr4 103472859 103472918 -52157202 - MLT1G1 LTR MaLR -44 535 476 7 1374 567 201 6 29 chr4 103473113 103473144 -52156976 + polypyrimidine Low_complexity Low_complexity 142 170 0 7 1374 1510 6 6 6 chr4 103473144 103473324 -52156796 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1374 567 201 6 29 chr4 103473324 103473466 -52156654 + CT-rich Low_complexity Low_complexity 1 141 0 7 1374 318 290 96 37 chr4 103474016 103474152 -52155968 - MLT1F2 LTR MaLR -5 555 412 7 1374 1770 189 96 0 chr4 103474190 103474565 -52155555 - MTD LTR MaLR -8 411 1 7 1374 373 343 70 66 chr4 103474598 103474885 -52155235 - MLT1F2 LTR MaLR -237 323 36 7 1374 2782 19 0 12 chr4 103475541 103475867 -52154253 + RLTRETN_Mm LTR ERVK 1 322 0 7 1374 286 339 140 18 chr4 103475984 103476155 -52153965 - LTR33 LTR ERVL -315 200 9 7 1374 324 0 0 0 chr4 103477021 103477057 -52153063 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1374 288 70 0 0 chr4 103477424 103477467 -52152653 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1374 405 0 0 0 chr4 103479809 103479854 -52150266 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1374 231 239 0 0 chr4 103480125 103480171 -52149949 - MIRc SINE MIR -6 262 217 7 1374 1064 293 115 79 chr4 103480385 103480941 -52149179 - MER82 DNA MER2_type -1 652 77 7 1374 588 95 0 0 chr4 103481251 103481335 -52148785 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 7 1374 338 0 0 23 chr4 103481359 103481402 -52148718 + (TTA)n Simple_repeat Simple_repeat 3 44 0 7 1374 892 316 147 34 chr4 103481405 103481917 -52148203 - Lx8 LINE L1 -146 7327 6758 7 1374 934 281 114 54 chr4 103482995 103483517 -52146603 - MLT2B4 LTR ERVL -2 558 3 7 1374 23 0 0 0 chr4 103484090 103484113 -52146007 + AT_rich Low_complexity Low_complexity 1 23 0 7 1374 216 336 19 75 chr4 103484614 103484775 -52145345 + MER5B DNA MER1_type 7 158 -20 7 1374 1479 125 82 75 chr4 103485509 103485828 -52144292 + ORR1A4 LTR MaLR 1 321 -8 7 1374 428 287 53 30 chr4 103485971 103486104 -52144016 + RSINE1 SINE B4 13 148 -17 7 1374 210 143 0 0 chr4 103486687 103486722 -52143398 + (TATATG)n Simple_repeat Simple_repeat 1 35 0 7 1374 370 327 167 45 chr4 103486791 103487121 -52142999 - MTEa LTR MaLR 0 379 10 7 1374 210 164 0 52 chr4 103487544 103487602 -52142518 + (GTTTG)n Simple_repeat Simple_repeat 2 56 0 7 1374 297 128 0 0 chr4 103489047 103489094 -52141026 + (CTG)n Simple_repeat Simple_repeat 1 47 0 7 1374 657 0 0 0 chr4 103489847 103489920 -52140200 + (CTG)n Simple_repeat Simple_repeat 2 74 0 7 1374 356 308 97 14 chr4 103490631 103490776 -52139344 + MIRb SINE MIR 13 169 -99 7 1374 197 83 0 27 chr4 103490796 103490833 -52139287 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 1374 24 0 0 0 chr4 103491168 103491192 -52138928 + AT_rich Low_complexity Low_complexity 1 24 0 7 1374 25 0 0 0 chr4 103491222 103491247 -52138873 + AT_rich Low_complexity Low_complexity 1 25 0 7 1374 499 312 75 0 chr4 103491272 103491464 -52138656 - MIR3 SINE MIR -6 202 3 7 1374 934 272 88 108 chr4 103492992 103493379 -52136741 - MTE2b LTR MaLR 0 379 1 7 1374 339 303 0 10 chr4 103493744 103493844 -52136276 + GA-rich Low_complexity Low_complexity 2 100 0 7 1374 526 78 26 0 chr4 103493845 103493922 -52136198 - L1_Mus3 LINE L1 -426 6212 6134 7 1374 3257 58 10 7 chr4 103493922 103494424 -52135696 + L1_Mus3 LINE L1 6209 6638 0 7 1374 23 0 0 0 chr4 103496293 103496316 -52133804 + AT_rich Low_complexity Low_complexity 1 23 0 7 1374 1329 73 0 0 chr4 103496494 103496672 -52133448 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 7 1374 693 97 0 0 chr4 103496674 103496777 -52133343 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 7 1374 553 229 90 0 chr4 103496799 103496921 -52133199 - B1_Mur2 SINE Alu -11 138 6 7 1374 284 343 58 7 chr4 103496930 103497068 -52133052 + MER58A DNA MER1_type 46 190 -34 7 1374 208 276 17 0 chr4 103497501 103497559 -52132561 - MER5B DNA MER1_type -105 73 15 7 1374 318 365 75 0 chr4 103499080 103499239 -52130881 - MER63A DNA AcHobo -39 171 1 7 1374 247 267 90 54 chr4 103499697 103499808 -52130312 - MLT1J2 LTR MaLR -2 446 332 7 1374 643 316 90 30 chr4 103500023 103500356 -52129764 - MLT1A0 LTR MaLR -8 357 5 1 1374 293 316 111 7 chr4 103500401 103500554 -52129566 + MLT1J2 LTR MaLR 261 429 -19 2 1374 285 296 23 80 chr4 103500907 103501083 -52129037 + MER117 DNA MER1_type 3 168 -29 3 1374 232 242 56 14 chr4 103501577 103501671 -52128449 + MIRb SINE MIR 119 222 -46 4 1374 236 225 76 76 chr4 103501733 103501863 -52128257 + MIR SINE MIR 38 179 -89 5 1374 39444 36 0 0 chr4 103503005 103508416 -52121704 - L1Md_T LINE L1 -1 6581 1170 6 1374 4760 155 26 33 chr4 103508422 103509327 -52120793 - L1Md_T LINE L1 -5411 1205 307 6 1374 196 253 98 37 chr4 103509773 103509855 -52120265 + MIRc SINE MIR 81 167 -101 7 1374 776 309 39 36 chr4 103510103 103510156 -52119964 - B4 SINE B4 -12 280 230 8 1374 351 0 0 0 chr4 103510156 103510195 -52119925 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1374 776 309 39 36 chr4 103510195 103510420 -52119700 - B4 SINE B4 -63 229 1 8 1374 216 185 56 0 chr4 103511461 103511515 -52118605 + GA-rich Low_complexity Low_complexity 3 59 0 1 1374 462 36 0 0 chr4 103511524 103511580 -52118540 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 1 1374 1105 95 0 0 chr4 103511580 103511727 -52118393 + B1_Mus1 SINE Alu 2 148 0 1 1374 645 132 15 15 chr4 103511727 103511858 -52118262 + A-rich Low_complexity Low_complexity 3 133 0 1 1374 618 71 0 0 chr4 103511858 103511942 -52118178 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1 1374 570 291 79 23 chr4 103512841 103513047 -52117073 + B4A SINE B4 5 221 -71 1 1374 1106 102 6 0 chr4 103513047 103513214 -52116906 + (GA)n Simple_repeat Simple_repeat 2 169 0 1 1374 263 141 5 21 chr4 103513365 103513418 -52116702 + MIRb SINE MIR 42 101 -167 1 1374 894 164 0 0 chr4 103514684 103514824 -52115296 + B1_Mur1 SINE Alu 8 147 -2 1 1374 671 284 52 52 chr4 103514840 103515052 -52115068 + B3A SINE B2 1 212 -4 1 1374 3528 20 5 0 chr4 103515058 103515452 -52114668 + MTA_Mm LTR MaLR 1 396 0 2 1374 225 0 0 0 chr4 103515535 103515560 -52114560 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1374 204 40 0 0 chr4 103516987 103517012 -52113108 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 2 1374 205 336 0 58 chr4 103517071 103517161 -52112959 + polypurine Low_complexity Low_complexity 3 86 0 2 1374 325 19 77 0 chr4 103517161 103517213 -52112907 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 2 1374 205 336 0 58 chr4 103517213 103517261 -52112859 + polypurine Low_complexity Low_complexity 87 133 0 2 1374 536 116 11 0 chr4 103517747 103517842 -52112278 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 2 1374 544 278 33 70 chr4 103517914 103518127 -52111993 - MER20 DNA MER1_type -7 212 8 2 1374 229 338 56 25 chr4 103518208 103518369 -52111751 - MER5A DNA MER1_type -22 167 2 2 1374 405 200 107 71 chr4 103519423 103519563 -52110557 + MLT1B LTR MaLR 2 146 -244 2 1374 849 145 0 38 chr4 103519708 103519894 -52110226 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1374 541 194 76 41 chr4 103520796 103520941 -52109179 - ID_B1 SINE B4 -73 151 2 3 1374 257 335 42 0 chr4 103521751 103521878 -52108242 - MIRb SINE MIR -12 250 110 3 1374 234 0 0 0 chr4 103521959 103521985 -52108135 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1374 545 42 14 0 chr4 103523760 103523832 -52106288 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1374 445 265 0 139 chr4 103523851 103524009 -52106111 - B3A SINE B2 -60 138 3 3 1374 270 0 0 0 chr4 103524012 103524042 -52106078 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1374 260 349 18 0 chr4 103527401 103527510 -52102610 + MIRb SINE MIR 26 136 -132 3 1374 420 71 0 0 chr4 103528773 103528829 -52101291 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 3 1374 268 291 11 23 chr4 103529321 103529409 -52100711 + ORR1E LTR MaLR 1 87 -272 3 1374 257 264 100 22 chr4 103529799 103529915 -52100205 - MIRb SINE MIR -117 159 43 4 1374 294 366 41 41 chr4 103531026 103531200 -52098920 + MIR SINE MIR 15 194 -68 4 1374 1181 139 0 58 chr4 103531200 103531406 -52098714 + B2_Mm2 SINE B2 2 195 0 4 1374 294 366 41 41 chr4 103531406 103531473 -52098647 + MIR SINE MIR 195 256 -6 4 1374 1098 209 88 83 chr4 103531602 103531764 -52098356 - ORR1D1 LTR MaLR -33 341 180 4 1374 432 67 0 0 chr4 103531764 103531824 -52098296 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1374 333 0 0 0 chr4 103531824 103531860 -52098260 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1374 1098 209 88 83 chr4 103531860 103532035 -52098085 - ORR1D1 LTR MaLR -195 179 2 4 1374 273 300 72 20 chr4 103532127 103532280 -52097840 - RMER15 LTR ERVL -9 566 406 4 1374 1083 58 0 0 chr4 103533850 103533989 -52096131 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 4 1374 240 200 0 36 chr4 103536773 103536856 -52093264 + CT-rich Low_complexity Low_complexity 4 83 0 4 1374 303 191 0 0 chr4 103536937 103537000 -52093120 + CT-rich Low_complexity Low_complexity 3 65 0 4 1374 414 0 0 0 chr4 103537845 103537891 -52092229 + (AGATG)n Simple_repeat Simple_repeat 3 48 0 5 1374 342 0 0 0 chr4 103537891 103537929 -52092191 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1374 407 151 0 11 chr4 103538875 103538969 -52091151 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1374 349 284 186 15 chr4 103538986 103539190 -52090930 - MIR SINE MIR -17 245 7 5 1374 512 298 66 50 chr4 103541394 103541652 -52088468 - MLT1A0 LTR MaLR -103 262 1 5 1374 349 346 143 17 chr4 103542080 103542430 -52087690 - L2a LINE L2 0 3426 3033 5 1374 581 302 72 84 chr4 103542485 103542901 -52087219 - MLT1D LTR MaLR -79 426 16 5 1374 201 147 0 0 chr4 103542946 103542980 -52087140 + (TCTCCC)n Simple_repeat Simple_repeat 2 35 0 5 1374 411 21 0 0 chr4 103542987 103543035 -52087085 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1374 199 327 194 0 chr4 103543882 103544047 -52086073 - MIRc SINE MIR -37 231 35 5 1374 25 0 0 0 chr4 103545211 103545236 -52084884 + AT_rich Low_complexity Low_complexity 1 25 0 6 1374 222 62 0 0 chr4 103545273 103545305 -52084815 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1374 652 169 361 0 chr4 103545802 103545968 -52084152 - URR1A DNA MER1_type 0 226 1 6 1374 426 274 108 48 chr4 103546297 103546546 -52083574 - MLT1A0 LTR MaLR -101 264 1 6 1375 274 281 0 12 chr4 103548526 103548609 -52081511 - L1MB1 LINE L1 -1 6167 6086 6 1375 216 225 41 27 chr4 103548704 103548777 -52081343 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1375 400 320 91 101 chr4 103548778 103548997 -52081123 - B4A SINE B4 0 292 76 6 1375 237 279 59 0 chr4 103549065 103549133 -52080987 + RMER15 LTR ERVL 499 570 -5 6 1375 269 197 30 15 chr4 103549148 103549215 -52080905 - B4A SINE B4 -223 69 2 6 1375 624 70 0 0 chr4 103549430 103549516 -52080604 + (GA)n Simple_repeat Simple_repeat 2 87 0 6 1375 322 267 40 0 chr4 103550607 103550682 -52079438 - ID4_ SINE ID -4 79 2 7 1375 410 288 69 52 chr4 103552953 103553077 -52077043 - MER2 DNA MER2_type -7 338 211 7 1375 489 34 0 0 chr4 103553077 103553136 -52076984 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1375 410 288 69 52 chr4 103553136 103553242 -52076878 - MER2 DNA MER2_type -135 210 104 7 1375 414 0 0 0 chr4 103553343 103553389 -52076731 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1375 286 290 39 29 chr4 103553718 103553821 -52076299 - L1MA6 LINE L1 -26 6274 6171 7 1375 339 322 52 19 chr4 103553810 103554022 -52076098 + L1MA6 LINE L1 5939 6157 -143 7 1375 523 287 75 102 chr4 103555441 103555841 -52074279 + MLT1B LTR MaLR 2 390 0 7 1375 193 300 33 0 chr4 103555966 103556026 -52074094 + L2a LINE L2 3312 3373 -53 7 1375 1314 69 0 0 chr4 103556399 103556573 -52073547 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 7 1375 180 0 0 0 chr4 103556573 103556593 -52073527 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 7 1375 409 156 11 22 chr4 103556594 103556686 -52073434 + CT-rich Low_complexity Low_complexity 2 92 0 7 1375 743 310 96 44 chr4 103556686 103557115 -52073005 + L2 LINE L2 2152 2602 -817 8 1375 379 301 64 87 chr4 103557373 103557591 -52072529 - MLT1C LTR MaLR 0 467 178 8 1375 254 307 45 0 chr4 103558785 103558873 -52071247 - PB1 SINE Alu -33 94 3 8 1375 414 0 0 0 chr4 103560468 103560514 -52069606 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1375 442 268 9 26 chr4 103560606 103560721 -52069399 - RSINE1 SINE B4 -41 124 12 8 1375 497 354 94 8 chr4 103560945 103561210 -52068910 - LTR33 LTR ERVL 0 515 228 8 1375 276 371 61 40 chr4 103563076 103563323 -52066797 - MIRb SINE MIR -16 252 1 8 1375 233 285 103 71 chr4 103564020 103564175 -52065945 - L2c LINE L2 -244 3143 2984 8 1375 882 146 47 6 chr4 103564537 103564709 -52065411 - URR1A DNA MER1_type -11 215 37 8 1375 235 365 94 11 chr4 103564733 103564924 -52065196 + MER20 DNA MER1_type 2 208 -11 8 1375 513 0 0 0 chr4 103566918 103566975 -52063145 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1375 315 0 0 0 chr4 103568762 103568797 -52061323 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1375 193 302 56 48 chr4 103568799 103568924 -52061196 + MIRb SINE MIR 85 210 -58 9 1375 228 122 0 0 chr4 103568965 103569006 -52061114 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 9 1375 212 246 17 17 chr4 103569770 103569828 -52060292 - MIRc SINE MIR -122 146 89 9 1375 295 300 97 98 chr4 103572273 103572593 -52057527 + MLT1A0 LTR MaLR 63 374 0 9 1375 212 337 47 0 chr4 103573604 103573690 -52056430 - L2a LINE L2 -360 3066 2977 9 1375 191 333 45 64 chr4 103574104 103574261 -52055859 - MIRm SINE MIR -122 154 1 9 1375 384 22 0 0 chr4 103574387 103574432 -52055688 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1375 232 156 0 0 chr4 103574489 103574534 -52055586 + MIR SINE MIR 100 144 -118 9 1375 300 266 100 43 chr4 103574694 103574879 -52055241 - MIRb SINE MIR 0 262 61 1 1375 519 298 91 58 chr4 103575756 103575827 -52054293 + B4A SINE B4 3 78 -214 1 1375 315 0 0 0 chr4 103575827 103575862 -52054258 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1375 519 298 91 58 chr4 103575862 103576064 -52054056 + B4A SINE B4 79 285 -7 1 1375 730 276 137 18 chr4 103576275 103576603 -52053517 + L1ME2z LINE L1 5584 5950 -494 1 1375 568 309 73 118 chr4 103576654 103576822 -52053298 + L1MC1 LINE L1 277 441 -6067 1 1375 288 0 0 0 chr4 103576822 103576854 -52053266 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1375 568 309 73 118 chr4 103576854 103577060 -52053060 + L1MC1 LINE L1 442 611 -5897 1 1375 1065 16 0 0 chr4 103577060 103577183 -52052937 + (GGAGAA)n Simple_repeat Simple_repeat 2 124 0 1 1375 568 309 73 118 chr4 103577183 103577314 -52052806 + L1MC1 LINE L1 612 759 -5749 1 1375 4487 39 26 4 chr4 103577314 103577857 -52052263 - L1Md_F2 LINE L1 -1 6581 6027 1 1375 6140 39 0 0 chr4 103577857 103578575 -52051545 + L1_Mm LINE L1 5093 5810 -73 1 1375 429 274 119 25 chr4 103578671 103578914 -52051206 + L1MC1 LINE L1 974 1239 -5269 1 1375 2689 279 61 7 chr4 103579044 103580173 -52049947 + L1MC1 LINE L1 2162 3360 -2961 1 1375 507 292 66 91 chr4 103580229 103580470 -52049650 + MLT1A1 LTR MaLR 174 408 0 1 1375 881 275 65 29 chr4 103580521 103580555 -52049565 + L1MC1 LINE L1 5734 5765 -743 1 1375 222 37 0 0 chr4 103580555 103580582 -52049538 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1375 881 275 65 29 chr4 103580582 103580963 -52049157 + L1MC1 LINE L1 5766 6163 -345 1 1375 424 304 119 8 chr4 103581070 103581338 -52048782 + L1MC1 LINE L1 6186 6483 -25 1 1375 885 126 0 0 chr4 103581342 103581485 -52048635 + (TA)n Simple_repeat Simple_repeat 2 144 0 1 1375 295 287 257 5 chr4 103581650 103581860 -52048260 + L1ME2z LINE L1 6161 6423 -21 1 1375 189 266 92 0 chr4 103582364 103582480 -52047640 - MIR SINE MIR -95 173 37 1 1375 375 252 52 0 chr4 103582536 103582651 -52047469 + ORR1E LTR MaLR 7 127 -232 1 1375 198 0 0 0 chr4 103583097 103583119 -52047001 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1375 1762 233 66 55 chr4 103583208 103583812 -52046308 - RMER19C LTR ERVK 0 611 1 1 1375 225 276 214 0 chr4 103583819 103583917 -52046203 - MIRc SINE MIR -69 199 81 1 1375 309 341 90 22 chr4 103587398 103587620 -52042500 - L1MC4a LINE L1 -2015 5867 5631 1 1375 199 122 41 0 chr4 103587645 103587694 -52042426 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 1 1375 564 15 0 0 chr4 103587726 103587791 -52042329 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1375 223 317 113 19 chr4 103588283 103588389 -52041731 + MIR SINE MIR 28 143 -119 1 1375 1650 263 138 27 chr4 103589725 103589912 -52040208 + Lx8 LINE L1 6760 6970 -503 1 1375 297 0 0 0 chr4 103589912 103589945 -52040175 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1375 1650 263 138 27 chr4 103589945 103590386 -52039734 + Lx8 LINE L1 6971 7457 -16 1 1375 275 0 29 0 chr4 103590444 103590479 -52039641 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1375 295 338 35 35 chr4 103592030 103592174 -52037946 + B1F1 SINE Alu 6 149 0 1 1375 952 277 30 57 chr4 103592178 103592455 -52037665 + B4A SINE B4 2 273 -19 1 1375 342 0 0 0 chr4 103592455 103592493 -52037627 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1375 201 74 0 0 chr4 103592493 103592520 -52037600 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1375 405 0 0 0 chr4 103592520 103592564 -52037556 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1 1375 952 277 30 57 chr4 103592564 103592583 -52037537 + B4A SINE B4 274 290 -2 1 1375 258 209 32 21 chr4 103592586 103592679 -52037441 + (CATA)n Simple_repeat Simple_repeat 2 95 0 1 1375 290 271 0 0 chr4 103592695 103592765 -52037355 + ID4_ SINE ID 3 72 -11 1 1375 270 0 0 0 chr4 103592825 103592855 -52037265 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1375 363 239 168 1 chr4 103594448 103594577 -52035543 + B1F SINE Alu 1 148 -1 1 1375 200 293 21 42 chr4 103595803 103595899 -52034221 + MIRb SINE MIR 115 208 -60 1 1375 326 280 97 15 chr4 103597327 103597461 -52032659 + MIR SINE MIR 3 147 -115 1 1375 1440 169 0 4 chr4 103597908 103598134 -52031986 - URR1B DNA MER1_type 0 225 1 1 1375 254 164 0 27 chr4 103598702 103598777 -52031343 + (TATG)n Simple_repeat Simple_repeat 4 76 0 1 1375 398 318 42 69 chr4 103598817 103599033 -52031087 - B4 SINE B4 -82 210 1 1 1375 643 206 27 14 chr4 103599052 103599200 -52030920 + MIR SINE MIR 112 261 -1 1 1375 385 278 165 33 chr4 103599221 103599493 -52030627 + L2 LINE L2 2775 3082 -337 1 1375 287 257 0 0 chr4 103599957 103600027 -52030093 + MER5A1 DNA MER1_type 43 112 -54 1 1375 471 100 0 0 chr4 103600027 103600097 -52030023 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1375 930 255 26 18 chr4 103600132 103600404 -52029716 - B4A SINE B4 -16 276 3 1 1375 191 318 106 0 chr4 103600773 103600858 -52029262 - L2c LINE L2 -22 3365 3272 1 1375 275 245 84 117 chr4 103601080 103601353 -52028767 + L1MC4 LINE L1 7089 7352 -690 1 1375 519 311 110 32 chr4 103601402 103601874 -52028246 + L1MC4 LINE L1 7513 8021 -21 1 1375 778 283 54 11 chr4 103602922 103603201 -52026919 + B4A SINE B4 2 292 0 1 1375 3508 18 2 12 chr4 103603367 103603767 -52026353 - MTA_Mm LTR MaLR 0 396 1 1 1375 443 255 27 60 chr4 103604505 103604655 -52025465 + B1F SINE Alu 3 147 -2 1 1375 342 0 0 0 chr4 103604673 103604711 -52025409 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 1375 360 0 0 0 chr4 103605543 103605583 -52024537 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1375 351 0 0 0 chr4 103605583 103605621 -52024499 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1375 400 36 0 35 chr4 103605915 103605973 -52024147 + L1_Mus4 LINE L1 5689 5744 -892 1 1375 477 0 0 0 chr4 103605974 103606027 -52024093 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1375 495 0 0 0 chr4 103607411 103607466 -52022654 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1375 410 94 0 15 chr4 103607792 103607857 -52022263 + (TAA)n Simple_repeat Simple_repeat 1 64 0 1 1375 318 229 0 0 chr4 103608138 103608208 -52021912 - MIR SINE MIR -123 139 70 1 1375 3303 211 67 22 chr4 103608600 103609412 -52020708 + Lx5 LINE L1 5650 6727 -733 1 1375 3108 259 135 1 chr4 103609404 103610197 -52019923 - Lx8 LINE L1 -152 7321 6423 1 1375 219 289 27 100 chr4 103610336 103610486 -52019634 - MIRb SINE MIR -101 167 29 1 1375 270 0 0 0 chr4 103610598 103610628 -52019492 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1375 903 57 16 0 chr4 103612397 103612521 -52017599 + B1_Mm SINE Alu 21 146 -1 1 1375 341 49 0 0 chr4 103612523 103612583 -52017537 + (GGA)n Simple_repeat Simple_repeat 1 60 0 1 1375 882 100 0 48 chr4 103612583 103612772 -52017348 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1375 229 255 0 0 chr4 103612822 103612873 -52017247 + B3A SINE B2 68 118 -80 1 1375 195 300 33 0 chr4 103613090 103613150 -52016970 + MIRc SINE MIR 65 126 -142 1 1375 21 57 0 0 chr4 103615431 103615466 -52014654 + AT_rich Low_complexity Low_complexity 1 35 0 1 1375 1847 184 86 0 chr4 103616104 103616490 -52013630 - MTD LTR MaLR 0 419 1 1 1375 3906 214 52 44 chr4 103616669 103617287 -52012833 - Lx5 LINE L1 -197 6853 6229 1 1375 1754 58 9 0 chr4 103617287 103617511 -52012609 + L1Md_A LINE L1 6357 6582 0 1 1375 3906 214 52 44 chr4 103617511 103617825 -52012295 - Lx5 LINE L1 -822 6228 5913 1 1375 691 209 87 12 chr4 103617828 103618010 -52012110 + Lx5 LINE L1 6868 7035 -15 1 1375 732 23 0 0 chr4 103618278 103618364 -52011756 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 1 1375 193 274 126 0 chr4 103619497 103619592 -52010528 - MIRb SINE MIR 0 268 162 1 1375 625 271 7 7 chr4 103621425 103621570 -52008550 + B1_Mur2 SINE Alu 2 146 -3 1 1375 240 83 32 32 chr4 103621590 103621652 -52008468 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 1 1375 587 288 87 25 chr4 103621899 103622141 -52007979 - MER47B DNA MER2_type -144 274 18 1 1375 248 305 76 30 chr4 103622933 103623124 -52006996 - MIRb SINE MIR -32 236 37 1 1375 260 300 93 30 chr4 103623484 103623665 -52006455 + MIR SINE MIR 45 244 -24 1 1375 559 288 35 45 chr4 103623870 103624070 -52006050 - B3A SINE B2 0 198 1 1 1375 386 20 20 0 chr4 103626298 103626349 -52003771 + (TTG)n Simple_repeat Simple_repeat 2 53 0 1 1375 26 0 0 0 chr4 103626926 103626952 -52003168 + AT_rich Low_complexity Low_complexity 1 26 0 1 1375 203 286 38 35 chr4 103627236 103627386 -52002734 - MIR SINE MIR -74 188 42 1 1375 1936 211 26 19 chr4 103627434 103627850 -52002270 - MTD LTR MaLR 0 419 1 1 1375 223 310 29 29 chr4 103628056 103628159 -52001961 - MIRb SINE MIR -57 211 109 1 1375 319 243 0 0 chr4 103628468 103628538 -52001582 - B4A SINE B4 -221 71 2 1 1375 400 305 47 0 chr4 103630937 103631065 -51999055 + B4A SINE B4 158 291 -1 1 1375 241 281 87 10 chr4 103631045 103631149 -51998971 - RMER12 LTR ERVK -487 835 724 1 1375 411 261 126 0 chr4 103631380 103631499 -51998621 + ID_B1 SINE B4 90 223 -1 1 1375 345 313 22 37 chr4 103632964 103633100 -51997020 - L2c LINE L2 0 3387 3254 1 1375 233 340 55 9 chr4 103635050 103635160 -51994960 + B1F SINE Alu 8 122 -27 1 1375 633 177 34 73 chr4 103635172 103635425 -51994695 - ORR1C2 LTR MaLR 0 384 1 1 1375 4267 246 58 42 chr4 103635425 103636764 -51993356 - ORR1C2-int LTR MaLR 0 1370 10 1 1375 775 202 9 86 chr4 103636763 103636985 -51993135 - ORR1C2 LTR MaLR -179 205 1 1 1375 1384 38 65 0 chr4 103637486 103637671 -51992449 - L1Md_F3 LINE L1 0 6584 6388 1 1375 197 272 74 0 chr4 103638291 103638372 -51991748 - MIRb SINE MIR -96 172 86 1 1375 517 250 25 59 chr4 103639541 103639745 -51990375 - Lx5 LINE L1 0 7460 7264 1 1375 957 285 20 18 chr4 103639744 103640155 -51989965 - Lx5 LINE L1 -758 6702 6046 1 1375 333 327 0 52 chr4 103640507 103640623 -51989497 - RSINE1 SINE B4 -13 152 43 1 1375 1129 147 47 5 chr4 103640631 103640843 -51989277 - URR1A DNA MER1_type 0 226 6 1 1375 246 260 101 30 chr4 103641049 103641148 -51988972 - L2b LINE L2 -13 3362 3257 1 1375 296 315 68 111 chr4 103641155 103641362 -51988758 + MER20 DNA MER1_type 1 198 -21 1 1375 294 29 0 0 chr4 103641847 103641882 -51988238 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1375 259 307 73 83 chr4 103642073 103642265 -51987855 + MIRb SINE MIR 66 255 -13 1 1375 212 0 0 35 chr4 103642319 103642348 -51987772 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1375 413 270 183 10 chr4 103643717 103643919 -51986201 + MLT1A LTR MaLR 127 363 -11 2 1375 775 253 107 60 chr4 103644456 103644775 -51985345 - Lx8 LINE L1 0 7473 7140 2 1375 232 314 0 95 chr4 103644903 103644998 -51985122 + MLT1J2 LTR MaLR 243 328 -120 2 1375 239 313 70 56 chr4 103645626 103645768 -51984352 + B4 SINE B4 64 207 -85 2 1375 554 161 0 151 chr4 103645672 103645818 -51984302 + B1_Mur4 SINE Alu 26 149 -1 2 1375 312 281 39 10 chr4 103646839 103646953 -51983167 + MLT1A0 LTR MaLR 37 154 -254 2 1375 237 243 71 0 chr4 103647950 103648020 -51982100 + MIRc SINE MIR 115 189 -79 2 1375 261 368 37 9 chr4 103649170 103649277 -51980843 + MIRb SINE MIR 120 229 -39 2 1375 455 200 0 0 chr4 103650530 103650625 -51979495 + RMER15 LTR ERVL 376 470 -105 2 1375 224 340 19 0 chr4 103651077 103651180 -51978940 + MIR SINE MIR 130 234 -28 2 1375 486 0 0 0 chr4 103651413 103651467 -51978653 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1375 432 288 43 19 chr4 103651696 103651955 -51978165 + MTD LTR MaLR 1 271 -136 2 1375 790 182 137 34 chr4 103652958 103653163 -51976957 - URR1A DNA MER1_type 0 226 1 2 1375 295 287 0 21 chr4 103653467 103653563 -51976557 + GA-rich Low_complexity Low_complexity 3 96 0 2 1375 234 0 0 0 chr4 103654311 103654337 -51975783 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1375 1449 145 4 4 chr4 103654401 103654658 -51975462 - Lx LINE L1 0 6654 6398 2 1375 3396 123 19 8 chr4 103654658 103655189 -51974931 + L1_Mur2 LINE L1 3612 4148 -1729 2 1375 517 243 73 7 chr4 103655236 103655373 -51974747 - B1F1 SINE Alu -3 146 1 2 1375 276 354 0 0 chr4 103656024 103656123 -51973997 - L2a LINE L2 0 3426 3328 2 1375 198 0 0 0 chr4 103656862 103656884 -51973236 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1375 467 292 7 65 chr4 103656936 103657090 -51973030 - B3 SINE B2 -67 149 5 2 1375 232 232 40 80 chr4 103657584 103657659 -51972461 - ID4 SINE ID -71 81 10 2 1375 378 291 13 54 chr4 103657663 103657812 -51972308 - B1F SINE Alu -5 144 2 2 1375 3040 64 7 29 chr4 103659116 103659536 -51970584 - Lx3_Mus LINE L1 0 7009 6599 2 1375 27 0 0 0 chr4 103659557 103659584 -51970536 + AT_rich Low_complexity Low_complexity 1 27 0 2 1375 210 37 0 0 chr4 103660234 103660261 -51969859 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1375 309 26 0 0 chr4 103661031 103661069 -51969051 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1375 764 129 18 6 chr4 103661539 103661710 -51968410 + (TG)n Simple_repeat Simple_repeat 1 173 0 2 1375 600 283 21 18 chr4 103662329 103662693 -51967427 - L1M6 LINE L1 -3721 2680 2314 2 1375 430 283 0 32 chr4 103663458 103663582 -51966538 + L3 LINE CR1 4167 4286 -203 2 1375 716 103 9 0 chr4 103665181 103665297 -51964823 + (GAAAA)n Simple_repeat Simple_repeat 4 120 0 2 1375 200 281 134 0 chr4 103665758 103665840 -51964280 - MIRb SINE MIR -120 148 56 2 1375 1492 70 11 5 chr4 103668114 103668300 -51961820 - B2_Mm2 SINE B2 -8 187 1 2 1375 225 94 0 0 chr4 103669719 103669751 -51960369 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1375 269 269 106 0 chr4 103671169 103671273 -51958847 + MIR SINE MIR 11 125 -143 2 1375 180 0 0 0 chr4 103671273 103671293 -51958827 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1375 3273 122 28 12 chr4 103671960 103672468 -51957652 + RMER20A LTR ERVK 1 516 0 2 1375 219 350 35 35 chr4 103674108 103674250 -51955870 + L2c LINE L2 3070 3211 -176 2 1375 219 139 0 0 chr4 103674853 103674889 -51955231 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2 1375 230 343 38 29 chr4 103674967 103675072 -51955048 - MER68 LTR ERVL -457 106 1 2 1375 219 345 88 35 chr4 103675185 103675356 -51954764 + MIR SINE MIR 13 192 -70 2 1375 1317 76 0 0 chr4 103675654 103675866 -51954254 + (TG)n Simple_repeat Simple_repeat 1 212 0 2 1375 419 317 65 110 chr4 103676292 103676664 -51953456 + MLT1A LTR MaLR 1 355 -19 2 1375 21 0 0 0 chr4 103676964 103676985 -51953135 + AT_rich Low_complexity Low_complexity 1 21 0 2 1375 304 189 56 42 chr4 103677759 103677831 -51952289 + ID4_ SINE ID 2 74 -9 2 1376 213 108 0 0 chr4 103678395 103678432 -51951688 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 2 1376 256 384 18 25 chr4 103680464 103680627 -51949493 - RMER15 LTR ERVL -40 535 374 2 1376 782 321 105 8 chr4 103682093 103682360 -51947760 + Tigger7 DNA MER2_type 1 293 -2198 2 1376 292 297 0 0 chr4 103682355 103682419 -51947701 + Tigger7 DNA MER2_type 2405 2468 -23 2 1376 267 215 12 37 chr4 103682803 103682885 -51947235 - MLT1A1 LTR MaLR -4 404 325 2 1376 291 244 62 62 chr4 103685487 103685631 -51944489 + MIRc SINE MIR 125 268 0 2 1376 393 22 0 0 chr4 103686581 103686627 -51943493 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1376 201 231 0 0 chr4 103686630 103686669 -51943451 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1376 291 361 28 51 chr4 103686924 103687102 -51943018 + MIRb SINE MIR 86 259 -9 2 1376 1761 159 109 8 chr4 103687235 103687570 -51942550 + ORR1A4 LTR MaLR 1 394 0 2 1376 515 294 138 68 chr4 103687827 103688181 -51941939 + MTEa LTR MaLR 1 379 0 2 1376 180 163 44 44 chr4 103689360 103689405 -51940715 + L3 LINE CR1 4332 4376 -113 2 1376 339 216 42 13 chr4 103690300 103690401 -51939719 - L1M2 LINE L1 -675 5499 5399 2 1376 380 241 137 118 chr4 103692298 103692510 -51937610 - B3 SINE B2 0 216 1 2 1376 262 312 12 49 chr4 103693064 103693145 -51936975 + PB1D10 SINE Alu 3 80 -37 2 1376 3337 32 3 0 chr4 103693146 103693517 -51936603 - L1Md_F3 LINE L1 -14 6570 6199 2 1376 289 292 123 0 chr4 103694282 103694388 -51935732 + MLT1D LTR MaLR 78 196 -309 2 1376 480 289 128 30 chr4 103694444 103694647 -51935473 + MLT1D LTR MaLR 283 505 0 2 1376 181 366 56 0 chr4 103694765 103694836 -51935284 - L2c LINE L2 -228 3159 3085 2 1376 381 22 0 0 chr4 103694994 103695040 -51935080 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1376 247 308 96 22 chr4 103695856 103695992 -51934128 + MIRc SINE MIR 22 167 -101 2 1376 225 179 118 15 chr4 103696582 103696650 -51933470 + MIRc SINE MIR 194 268 0 2 1376 189 0 0 0 chr4 103697157 103697178 -51932942 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2 1376 312 27 0 0 chr4 103697187 103697224 -51932896 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1376 208 328 73 4 chr4 103697838 103697960 -51932160 - L2a LINE L2 -1 3374 3241 2 1376 934 312 46 41 chr4 103698154 103698545 -51931575 - MLT1C LTR MaLR -20 447 55 2 1376 196 361 103 16 chr4 103698659 103698853 -51931267 - L2a LINE L2 -444 2975 2765 2 1376 427 325 43 12 chr4 103699007 103699169 -51930951 - L2a LINE L2 -949 2470 2304 2 1376 257 344 80 40 chr4 103701213 103701292 -51928828 + LTR33 LTR ERVL 130 218 -297 2 1376 809 46 0 18 chr4 103701292 103701403 -51928717 + (TCTCCC)n Simple_repeat Simple_repeat 1 109 0 2 1376 257 344 80 40 chr4 103701403 103701523 -51928597 + LTR33 LTR ERVL 219 337 -178 2 1376 351 0 0 0 chr4 103702119 103702158 -51927962 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1376 441 0 0 0 chr4 103702158 103702206 -51927914 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1376 194 314 10 113 chr4 103702926 103703023 -51927097 + L2b LINE L2 3289 3375 0 2 1376 388 327 112 19 chr4 103703876 103704052 -51926068 - MER58B DNA MER1_type -28 313 124 2 1376 392 97 16 0 chr4 103704052 103704114 -51926006 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1376 312 328 35 26 chr4 103704117 103704233 -51925887 - PB1D10 SINE Alu 0 117 1 2 1376 388 327 112 19 chr4 103704233 103704320 -51925800 - MER58B DNA MER1_type -218 123 25 2 1376 463 329 23 17 chr4 103704710 103704883 -51925237 - MIRb SINE MIR -43 225 52 2 1376 180 348 29 29 chr4 103705547 103705615 -51924505 + MIR SINE MIR 33 100 -108 2 1376 417 376 15 20 chr4 103705709 103705907 -51924213 + MIR SINE MIR 10 206 -56 2 1376 493 42 28 0 chr4 103707564 103707636 -51922484 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1376 181 333 36 121 chr4 103708331 103708471 -51921649 - L2b LINE L2 -41 3334 3207 2 1376 398 296 74 0 chr4 103709896 103710004 -51920116 + PB1D10 SINE Alu 1 116 -1 2 1376 296 294 0 0 chr4 103710014 103710082 -51920038 - MIRm SINE MIR -10 266 199 2 1376 237 352 53 117 chr4 103710082 103710278 -51919842 - L2b LINE L2 -12 3363 3117 2 1376 1626 218 87 33 chr4 103710443 103710833 -51919287 + Lx6 LINE L1 6874 7284 -176 2 1376 267 79 0 0 chr4 103710840 103710878 -51919242 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2 1376 399 273 27 9 chr4 103710917 103711028 -51919092 + Lx7 LINE L1 7189 7301 -395 2 1376 401 312 20 20 chr4 103711304 103711451 -51918669 + Lx8 LINE L1 6953 7099 -374 2 1376 418 203 25 44 chr4 103711610 103711770 -51918350 + (TTATA)n Simple_repeat Simple_repeat 2 158 0 2 1376 688 280 145 0 chr4 103712471 103712671 -51917449 - MIRb SINE MIR -30 238 10 2 1376 775 234 34 152 chr4 103713170 103713467 -51916653 + RMER15 LTR ERVL 27 288 -287 2 1376 950 224 48 93 chr4 103713440 103713730 -51916390 + MTE2a LTR MaLR 98 374 -5 2 1376 839 310 120 25 chr4 103713769 103714526 -51915594 - L1M4 LINE L1 -853 5293 4465 2 1376 217 238 257 0 chr4 103714839 103714940 -51915180 + MIR SINE MIR 118 244 -18 2 1376 380 294 81 0 chr4 103715099 103715235 -51914885 + B1F1 SINE Alu 1 147 -2 2 1376 297 312 19 111 chr4 103715262 103715315 -51914805 + PB1D9 SINE Alu 15 65 -55 2 1376 603 71 31 0 chr4 103715315 103715413 -51914707 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1376 297 312 19 111 chr4 103715413 103715467 -51914653 + PB1D9 SINE Alu 66 112 -8 2 1376 309 82 0 0 chr4 103715511 103715560 -51914560 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1376 934 307 21 14 chr4 103715644 103715928 -51914192 + B4A SINE B4 5 290 -2 2 1376 237 33 0 0 chr4 103715951 103715981 -51914139 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 1376 539 251 172 32 chr4 103717305 103717579 -51912541 - ORR1D2 LTR MaLR -41 318 1 3 1376 257 256 24 49 chr4 103717983 103718065 -51912055 + ID SINE ID 4 83 -141 3 1376 322 331 74 19 chr4 103718100 103718279 -51911841 + MIRb SINE MIR 52 251 -17 3 1376 301 227 229 39 chr4 103718507 103718686 -51911434 + L1ME4a LINE L1 5843 6055 -69 3 1376 685 200 8 0 chr4 103718741 103718866 -51911254 - B1_Mur2 SINE Alu 0 149 24 3 1376 3856 45 0 2 chr4 103719748 103720190 -51909930 + L1Md_F3 LINE L1 6130 6570 -14 3 1376 205 186 0 0 chr4 103720273 103720316 -51909804 + A-rich Low_complexity Low_complexity 2 44 0 3 1376 187 310 91 41 chr4 103720529 103720650 -51909470 - MIRb SINE MIR -79 189 63 3 1376 314 312 39 65 chr4 103720722 103720952 -51909168 + L1MEc LINE L1 82 305 -6095 3 1376 231 374 35 6 chr4 103721109 103721281 -51908839 + L1MEc LINE L1 792 968 -5447 3 1376 31 44 0 0 chr4 103721722 103721767 -51908353 + AT_rich Low_complexity Low_complexity 1 45 0 3 1376 630 259 61 0 chr4 103721928 103722075 -51908045 - B3A SINE B2 -42 156 1 3 1376 356 294 125 60 chr4 103722203 103722732 -51907388 + L1MEc LINE L1 1677 2239 -4161 3 1376 1223 58 39 0 chr4 103722853 103723007 -51907113 - L1_Mm LINE L1 -340 5543 5384 3 1376 5469 55 3 3 chr4 103723007 103723682 -51906438 + L1Md_F2 LINE L1 5898 6572 -10 3 1376 744 182 0 0 chr4 103723682 103723808 -51906312 + B1_Mur3 SINE Alu 22 147 -2 3 1376 300 111 31 16 chr4 103723829 103723893 -51906227 + A-rich Low_complexity Low_complexity 1 65 0 3 1376 692 344 68 15 chr4 103723974 103724517 -51905603 + L1MEc LINE L1 4697 5268 -1051 3 1376 3338 69 7 7 chr4 103724597 103725035 -51905085 - L1_Mus2 LINE L1 -1 6565 6128 3 1376 405 326 28 0 chr4 103725072 103725213 -51904907 + L1MEc LINE L1 5788 5932 -405 3 1376 329 287 74 0 chr4 103725215 103725323 -51904797 - MLT1A1 LTR MaLR -2 406 291 3 1376 195 123 52 17 chr4 103725939 103725997 -51904123 + (ATGGTG)n Simple_repeat Simple_repeat 6 65 0 3 1376 226 186 0 23 chr4 103726411 103726455 -51903665 + MIRb SINE MIR 53 95 -173 3 1376 342 123 0 0 chr4 103726910 103726967 -51903153 + (ATTAG)n Simple_repeat Simple_repeat 4 60 0 3 1376 768 196 0 7 chr4 103726988 103727127 -51902993 + B1_Mur1 SINE Alu 5 142 -7 3 1376 414 268 45 38 chr4 103727303 103727435 -51902685 - RSINE1 SINE B4 -29 136 4 3 1376 336 55 0 89 chr4 103727612 103727691 -51902429 + (TTTG)n Simple_repeat Simple_repeat 2 73 0 3 1376 405 319 145 3 chr4 103728402 103728754 -51901366 - L1MA4A LINE L1 -23 6280 5879 3 1376 1951 239 34 36 chr4 103728760 103729456 -51900664 - L1MA5 LINE L1 -472 5828 5115 3 1376 606 267 77 25 chr4 103729549 103729745 -51900375 + B3 SINE B2 6 211 -5 3 1376 537 92 0 0 chr4 103730173 103730249 -51899871 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1376 419 0 20 0 chr4 103730249 103730299 -51899821 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1376 659 273 36 59 chr4 103730311 103730615 -51899505 - MER2 DNA MER2_type -28 317 1 3 1376 298 316 41 49 chr4 103730815 103730938 -51899182 - MIRm SINE MIR -127 149 28 3 1376 228 190 207 0 chr4 103731416 103731474 -51898646 + MER21B LTR ERV1 12 81 -782 3 1376 494 343 90 59 chr4 103731537 103731924 -51898196 + MER21B LTR ERV1 358 756 -107 3 1376 486 0 0 0 chr4 103732093 103732147 -51897973 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1376 682 275 61 7 chr4 103732190 103732468 -51897652 - L2 LINE L2 -1197 2222 1930 3 1376 775 214 0 0 chr4 103733525 103733670 -51896450 - B1_Mur4 SINE Alu 0 150 6 3 1376 228 294 79 29 chr4 103734354 103734494 -51895626 + Charlie18a DNA MER1_type 100 246 -96 3 1376 189 132 0 0 chr4 103734731 103734769 -51895351 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1376 205 298 71 40 chr4 103738130 103738256 -51891864 - MIR SINE MIR -25 237 108 3 1376 351 290 159 69 chr4 103738313 103738691 -51891429 + MLT1C LTR MaLR 43 454 -13 3 1376 232 238 0 0 chr4 103739843 103739885 -51890235 + polypyrimidine Low_complexity Low_complexity 3 44 0 3 1376 21 0 0 0 chr4 103740924 103740945 -51889175 + AT_rich Low_complexity Low_complexity 1 21 0 3 1376 336 320 36 53 chr4 103740972 103741204 -51888916 + L1M5 LINE L1 4524 4751 -1395 3 1376 324 0 0 0 chr4 103741204 103741240 -51888880 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1376 336 320 36 53 chr4 103741240 103741254 -51888866 + L1M5 LINE L1 4752 4765 -1381 3 1376 446 33 17 0 chr4 103741685 103741745 -51888375 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1376 189 0 0 0 chr4 103742173 103742194 -51887926 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1376 950 278 60 3 chr4 103747773 103748087 -51882033 - L1MA5 LINE L1 -372 5928 5597 3 1376 1089 114 119 0 chr4 103748100 103748293 -51881827 + URR1A DNA MER1_type 1 216 -10 3 1376 1584 66 5 0 chr4 103748295 103748507 -51881613 + L1Md_F2 LINE L1 6367 6579 -3 3 1376 2909 284 81 64 chr4 103748542 103750454 -51879666 - L1MA5 LINE L1 -946 5197 3255 3 1376 258 264 161 21 chr4 103750468 103750561 -51879559 + MTEa LTR MaLR 31 136 -243 3 1376 634 282 22 11 chr4 103750596 103750779 -51879341 + MTEb-int LTR MaLR 139 323 -1257 3 1376 260 308 106 15 chr4 103750774 103750906 -51879214 + MTEb-int LTR MaLR 1437 1580 0 3 1376 1006 281 70 28 chr4 103750906 103751261 -51878859 + MTEb LTR MaLR 1 370 -9 3 1376 296 326 0 8 chr4 103751309 103751442 -51878678 - L1_Mur3 LINE L1 -4249 1631 1500 3 1376 447 137 0 0 chr4 103753280 103753353 -51876767 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1376 459 309 51 36 chr4 103753599 103753794 -51876326 - B3A SINE B2 0 198 1 3 1376 1374 111 0 40 chr4 103756918 103757143 -51872977 - URR1B DNA MER1_type -3 222 7 3 1376 833 236 16 0 chr4 103757651 103757842 -51872278 + B3 SINE B2 3 196 -20 3 1376 560 286 188 10 chr4 103758274 103758588 -51871532 - Lx8 LINE L1 -245 7228 6859 3 1376 1705 302 83 21 chr4 103758934 103760211 -51869909 - L1MA4A LINE L1 -625 5957 4532 3 1376 378 0 0 0 chr4 103761376 103761418 -51868702 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1376 36124 34 1 0 chr4 103762322 103767962 -51862158 + L1Md_T LINE L1 1 5589 -297 3 1376 9124 8 0 0 chr4 103767962 103768958 -51861162 + L1Md_T LINE L1 5590 6585 0 3 1376 378 0 0 0 chr4 103768973 103769015 -51861105 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1376 441 301 102 0 chr4 103769100 103769296 -51860824 - MIR SINE MIR -21 241 26 3 1376 505 335 84 45 chr4 103769353 103769709 -51860411 + LTR33 LTR ERVL 60 429 -86 3 1376 2743 67 21 11 chr4 103770129 103770507 -51859613 - L1_Mus3 LINE L1 0 6638 6257 3 1376 409 248 41 116 chr4 103771033 103771179 -51858941 - B1F SINE Alu -14 135 1 3 1376 377 264 27 48 chr4 103772353 103772500 -51857620 - MIRc SINE MIR -70 198 55 3 1376 3573 271 94 19 chr4 103773547 103774726 -51855394 + Lx8 LINE L1 6205 7472 -1 3 1376 24 0 0 0 chr4 103774728 103774752 -51855368 + AT_rich Low_complexity Low_complexity 1 24 0 3 1376 275 109 36 18 chr4 103774881 103774937 -51855183 + Lx2 LINE L1 6865 6921 -76 3 1376 955 171 135 5 chr4 103775097 103775297 -51854823 - URR1A DNA MER1_type 0 226 1 3 1376 1392 254 77 16 chr4 103775582 103776151 -51853969 - L1MB3 LINE L1 -114 6066 5450 3 1376 234 0 0 0 chr4 103777607 103777633 -51852487 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1376 495 0 0 0 chr4 103778050 103778105 -51852015 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1376 457 204 15 0 chr4 103778328 103778460 -51851660 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 1376 236 359 10 0 chr4 103778722 103778825 -51851295 + GA-rich Low_complexity Low_complexity 6 109 0 3 1376 355 273 25 64 chr4 103779594 103779758 -51850362 + MIRc SINE MIR 15 176 -92 3 1376 844 179 13 13 chr4 103780931 103781084 -51849036 + URR1B DNA MER1_type 5 157 -68 3 1376 632 156 0 0 chr4 103781084 103781180 -51848940 + B1_Mur3 SINE Alu 3 98 -51 3 1376 228 313 67 51 chr4 103781939 103782106 -51848014 + MIRb SINE MIR 45 216 -46 3 1376 583 215 48 32 chr4 103782884 103783009 -51847111 + B1F2 SINE Alu 2 128 -21 3 1376 220 280 93 65 chr4 103783440 103783547 -51846573 - MIR3 SINE MIR -31 177 68 3 1376 1456 192 141 63 chr4 103783823 103784206 -51845914 + MTD LTR MaLR 5 417 -2 3 1376 245 71 71 0 chr4 103784250 103784292 -51845828 - B3 SINE B2 -110 106 62 3 1376 23 0 0 0 chr4 103784624 103784647 -51845473 + AT_rich Low_complexity Low_complexity 1 23 0 3 1376 423 0 0 0 chr4 103785202 103785249 -51844871 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 1376 494 333 83 18 chr4 103785460 103785677 -51844443 + MIR SINE MIR 8 238 -24 3 1376 190 322 206 22 chr4 103786958 103787050 -51843070 + MIR SINE MIR 33 141 -67 3 1376 1110 174 42 5 chr4 103788148 103788362 -51841758 - URR1A DNA MER1_type 0 226 5 3 1376 2966 54 0 0 chr4 103788491 103788845 -51841275 - L1Md_F2 LINE L1 -309 6273 5920 3 1376 2499 63 0 0 chr4 103788845 103789147 -51840973 + L1Md_F2 LINE L1 6275 6576 -6 3 1376 26 30 0 0 chr4 103789203 103789236 -51840884 + AT_rich Low_complexity Low_complexity 1 33 0 3 1376 201 74 0 0 chr4 103789249 103789276 -51840844 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 3 1376 480 329 77 10 chr4 103789408 103789721 -51840399 - L1MD2 LINE L1 -393 5966 5633 3 1376 751 246 128 68 chr4 103789827 103790093 -51840027 + B4A SINE B4 5 286 -6 3 1376 748 243 19 104 chr4 103790196 103790407 -51839713 + B3A SINE B2 2 194 -4 3 1376 621 40 0 0 chr4 103790531 103790607 -51839513 + (GGA)n Simple_repeat Simple_repeat 3 78 0 3 1376 394 323 30 36 chr4 103790696 103790724 -51839396 + ID_B1 SINE B4 57 222 -2 3 1376 669 237 29 0 chr4 103790724 103790863 -51839257 + B1_Mur1 SINE Alu 6 148 -1 3 1376 252 0 0 0 chr4 103791602 103791630 -51838490 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 3 1376 186 339 18 0 chr4 103791647 103791703 -51838417 - MIRm SINE MIR 0 276 220 3 1376 189 381 60 0 chr4 103792889 103792973 -51837147 - L3b LINE CR1 -131 351 263 3 1376 419 288 75 25 chr4 103793103 103793342 -51836778 + L1MC5 LINE L1 7608 7858 -103 4 1376 1400 226 84 72 chr4 103793470 103793884 -51836236 + MTD LTR MaLR 1 419 0 4 1376 472 291 92 136 chr4 103794335 103794725 -51835395 + MLT1C LTR MaLR 18 457 -10 4 1376 636 259 72 27 chr4 103794843 103795065 -51835055 + MLT1D LTR MaLR 271 502 -3 4 1376 3585 133 77 15 chr4 103795073 103795684 -51834436 - Lx4A LINE L1 -392 6666 6018 4 1376 2466 137 60 8 chr4 103795684 103796052 -51834068 + Lx4A LINE L1 6669 7055 -3 4 1376 401 208 51 13 chr4 103796120 103796198 -51833922 + ID4 SINE ID 1 81 -2 4 1376 263 370 30 30 chr4 103796439 103796570 -51833550 + MIRb SINE MIR 46 176 -92 4 1376 259 416 29 11 chr4 103797990 103798165 -51831955 + MER5B DNA MER1_type 1 178 0 4 1376 320 350 79 12 chr4 103798752 103798917 -51831203 - MLT1B LTR MaLR -11 379 204 4 1376 180 0 0 0 chr4 103798927 103798947 -51831173 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1376 471 308 62 52 chr4 103798999 103799029 -51831091 - Lx7 LINE L1 0 7473 7444 4 1376 4633 65 7 0 chr4 103799029 103799582 -51830538 - L1_Mus1 LINE L1 -3 6564 6008 4 1376 626 268 37 21 chr4 103799582 103799845 -51830275 - Lx7 LINE L1 -30 7443 7165 4 1376 214 218 12 25 chr4 103800023 103800103 -51830017 + CT-rich Low_complexity Low_complexity 2 80 0 4 1376 637 235 107 0 chr4 103800150 103800337 -51829783 - L1MA6 LINE L1 -544 5756 5550 4 1376 1010 278 118 17 chr4 103800343 103800818 -51829302 + L1MA6 LINE L1 5764 6286 -14 4 1376 3583 158 36 37 chr4 103801746 103802388 -51827732 + RLTR26 LTR ERVK 1 641 -1 4 1376 236 258 88 22 chr4 103802612 103802703 -51827417 + MLT1A1 LTR MaLR 310 406 -2 4 1376 183 333 0 0 chr4 103803091 103803154 -51826966 - L2b LINE L2 -10 3365 3303 4 1376 2717 178 54 6 chr4 103803615 103804118 -51826002 - RMER5 LTR ERV1 -7 527 1 4 1376 22 0 0 0 chr4 103804372 103804394 -51825726 + AT_rich Low_complexity Low_complexity 1 22 0 4 1376 212 283 61 11 chr4 103804692 103804824 -51825296 + MIRb SINE MIR 17 154 -54 4 1376 180 194 0 0 chr4 103805243 103805274 -51824846 - L3 LINE CR1 -4340 149 119 4 1376 430 285 93 60 chr4 103805735 103805918 -51824202 + MLT1A0 LTR MaLR 11 199 -166 4 1376 180 111 0 0 chr4 103807602 103807629 -51822491 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 4 1376 684 168 0 0 chr4 103807984 103808109 -51822011 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 4 1376 2954 63 2 8 chr4 103808109 103808506 -51821614 - BGLII LTR ERVK 0 421 27 4 1376 6569 233 86 24 chr4 103808568 103808614 -51821506 - Lx7 LINE L1 -289 7407 7361 4 1376 180 0 0 0 chr4 103808614 103808634 -51821486 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 21 6569 233 86 24 chr4 103808634 103809618 -51820502 - Lx7 LINE L1 -336 7360 6290 4 1377 455 0 18 0 chr4 103809618 103809673 -51820447 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1377 6569 231 54 35 chr4 103809673 103810901 -51819219 - Lx7 LINE L1 -1407 6289 5047 4 1377 4368 247 32 7 chr4 103810902 103811955 -51818165 + Lx9 LINE L1 6564 7643 -1 4 1377 612 206 24 0 chr4 103811956 103812121 -51817999 + GA-rich Low_complexity Low_complexity 1 169 0 4 1377 15626 202 63 11 chr4 103812121 103814898 -51815222 - Lx7 LINE L1 -821 5059 2147 4 1377 189 0 0 0 chr4 103814898 103814919 -51815201 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 1377 15626 202 63 11 chr4 103814919 103814982 -51815138 - Lx7 LINE L1 -3734 2146 2074 4 1377 279 0 0 0 chr4 103814982 103815013 -51815107 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1377 15626 227 53 31 chr4 103815013 103816076 -51814044 - Lx7 LINE L1 -3807 2073 997 4 1377 279 54 0 0 chr4 103816076 103816113 -51814007 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1377 871 297 25 89 chr4 103816113 103816271 -51813849 - Lx7 LINE L1 -6732 996 850 4 1377 189 321 0 0 chr4 103817161 103817217 -51812903 - MIR SINE MIR -58 204 149 4 1377 326 345 37 55 chr4 103817328 103817546 -51812574 - Charlie5 DNA MER1_type -2410 214 1 4 1377 2142 210 108 31 chr4 103818092 103818637 -51811483 - RMER19B LTR ERVK 0 902 316 4 1377 204 143 0 51 chr4 103819747 103819806 -51810314 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1377 210 236 17 68 chr4 103819829 103819947 -51810173 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 1377 274 179 17 78 chr4 103820005 103820120 -51810000 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 1377 555 252 78 13 chr4 103820231 103820384 -51809736 - RSINE1 SINE B4 0 165 3 4 1377 786 306 107 8 chr4 103822704 103822967 -51807153 + B4A SINE B4 2 290 -2 4 1377 248 0 0 30 chr4 103824757 103824790 -51805330 + (CAGCC)n Simple_repeat Simple_repeat 5 36 0 4 1377 366 239 0 53 chr4 103825605 103825680 -51804440 - B3 SINE B2 -145 71 1 4 1377 603 236 36 57 chr4 103825680 103825829 -51804291 + B3 SINE B2 69 213 -3 4 1377 231 318 0 0 chr4 103825838 103825901 -51804219 + L2a LINE L2 3364 3426 0 4 1377 1365 57 0 0 chr4 103825915 103826090 -51804030 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 4 1377 23 0 0 0 chr4 103827142 103827165 -51802955 + AT_rich Low_complexity Low_complexity 1 23 0 4 1377 219 275 14 0 chr4 103827260 103827329 -51802791 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1377 1116 289 17 14 chr4 103827337 103827628 -51802492 - B4A SINE B4 0 292 1 4 1377 1230 200 28 16 chr4 103828449 103828698 -51801422 + RMER1B Other Other 801 1052 -14 4 1377 1151 215 10 0 chr4 103828815 103829020 -51801100 + B3 SINE B2 3 209 -7 4 1377 271 200 47 53 chr4 103829020 103829231 -51800889 + (TATAA)n Simple_repeat Simple_repeat 1 209 0 4 1377 49 32 0 0 chr4 103829281 103829344 -51800776 + AT_rich Low_complexity Low_complexity 1 63 0 4 1377 886 64 42 21 chr4 103829345 103829489 -51800631 - L1Md_F3 LINE L1 -1 6583 6437 4 1377 473 280 124 26 chr4 103830044 103830238 -51799882 + B3 SINE B2 3 215 -1 4 1377 28 29 0 0 chr4 103830241 103830276 -51799844 + AT_rich Low_complexity Low_complexity 1 35 0 4 1377 468 0 0 0 chr4 103831110 103831162 -51798958 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 4 1377 1110 301 4 4 chr4 103831547 103831824 -51798296 + Lx5 LINE L1 6774 7050 0 4 1377 3777 57 7 0 chr4 103833025 103833607 -51796513 - L1_Mus1 LINE L1 -595 5972 5385 4 1377 4659 60 7 13 chr4 103833607 103834202 -51795918 + L1_Mus1 LINE L1 5977 6567 0 4 1377 531 0 0 0 chr4 103834665 103834724 -51795396 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1377 203 372 0 0 chr4 103836303 103836389 -51793731 + MIRb SINE MIR 106 191 -77 4 1377 514 0 15 15 chr4 103837642 103837709 -51792411 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1377 502 202 229 15 chr4 103837709 103837840 -51792280 - B3 SINE B2 -51 165 7 4 1377 205 353 93 29 chr4 103838183 103838355 -51791765 + MIRb SINE MIR 86 268 0 4 1377 236 381 52 15 chr4 103839044 103839180 -51790940 - ORR1E LTR MaLR -210 149 9 4 1377 305 331 90 20 chr4 103839189 103839433 -51790687 + MLT2F LTR ERVL 315 575 -88 4 1377 183 80 0 0 chr4 103839543 103839568 -51790552 + (TATG)n Simple_repeat Simple_repeat 4 28 0 4 1377 215 274 0 0 chr4 103839569 103839620 -51790500 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1377 395 265 21 62 chr4 103840322 103840467 -51789653 + B1F1 SINE Alu 2 140 -9 4 1377 1910 298 73 9 chr4 103840612 103841455 -51788665 - L1MA6 LINE L1 0 6300 5386 4 1377 279 0 0 0 chr4 103841455 103841486 -51788634 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1377 1535 314 84 31 chr4 103841486 103841505 -51788615 - L1MA6 LINE L1 -906 5385 5369 4 1377 525 289 39 39 chr4 103841505 103841710 -51788410 - ID_B1 SINE B4 -18 206 2 4 1377 1535 271 113 113 chr4 103841710 103842366 -51787754 - L1MA6 LINE L1 -923 5368 4714 4 1377 189 0 0 0 chr4 103842823 103842844 -51787276 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1377 985 246 5 0 chr4 103843728 103843931 -51786189 - B3 SINE B2 -10 206 3 4 1377 460 329 85 55 chr4 103843964 103844292 -51785828 + MER2 DNA MER2_type 1 338 -7 4 1377 224 122 39 58 chr4 103846252 103846304 -51783816 + L2a LINE L2 3292 3342 -84 4 1377 321 298 0 0 chr4 103846663 103846841 -51783279 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1377 1190 86 16 6 chr4 103847791 103848105 -51782015 + (TTTC)n Simple_repeat Simple_repeat 1 316 0 4 1377 6744 177 22 21 chr4 103848131 103849403 -51780717 - Lx5 LINE L1 -2 7048 5776 4 1377 2635 161 9 2 chr4 103849403 103849850 -51780270 - L1_Mur2 LINE L1 -931 4946 4497 4 1377 510 103 0 0 chr4 103849852 103849930 -51780190 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1377 1679 170 3 0 chr4 103849931 103850225 -51779895 - ORR1B2 LTR MaLR -67 300 6 4 1377 357 327 127 12 chr4 103851004 103851335 -51778785 + L2 LINE L2 2313 2681 -738 4 1377 679 244 19 0 chr4 103851816 103851972 -51778148 + B3A SINE B2 7 165 -33 4 1377 531 107 0 0 chr4 103851972 103852056 -51778064 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1377 21 36 0 0 chr4 103852056 103852084 -51778036 + AT_rich Low_complexity Low_complexity 1 28 0 4 1377 2092 159 3 3 chr4 103852221 103852567 -51777553 + ORR1A1 LTR MaLR 1 346 0 4 1377 230 322 77 39 chr4 103853070 103853225 -51776895 - MIRb SINE MIR -61 207 47 4 1377 428 306 45 28 chr4 103854083 103854261 -51775859 + MER5A DNA MER1_type 3 183 -6 4 1377 180 0 0 0 chr4 103854722 103854742 -51775378 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 4 1377 275 220 38 48 chr4 103854742 103854836 -51775284 - HAL1 LINE L1 -144 2363 2270 4 1377 314 288 53 64 chr4 103855451 103855622 -51774498 - MIR SINE MIR -13 249 81 4 1377 262 311 11 11 chr4 103856702 103856793 -51773327 + L3b LINE CR1 257 347 -135 4 1377 844 304 43 38 chr4 103858194 103858566 -51771554 + MLT1B LTR MaLR 10 383 -7 4 1377 893 228 117 22 chr4 103858742 103859109 -51771011 + Helitron1Na_Mam RC Helitron 90 491 -571 4 1377 334 161 12 36 chr4 103859472 103859556 -51770564 + G-rich Low_complexity Low_complexity 5 86 0 4 1377 296 253 58 92 chr4 103860016 103860197 -51769923 - MIRc SINE MIR -42 220 50 4 1377 358 333 72 29 chr4 103860361 103860568 -51769552 - MLT2B1 LTR ERVL -218 302 87 4 1377 1114 297 25 45 chr4 103860568 103860924 -51769196 + ORR1E LTR MaLR 1 349 -10 4 1377 402 339 87 12 chr4 103861089 103861331 -51768789 + MLT1A0 LTR MaLR 30 289 -76 4 1377 187 111 17 69 chr4 103862389 103862447 -51767673 + A-rich Low_complexity Low_complexity 2 56 0 4 1377 236 274 27 0 chr4 103862594 103862667 -51767453 + GA-rich Low_complexity Low_complexity 4 78 0 4 1377 436 283 0 0 chr4 103863245 103863344 -51766776 + B3A SINE B2 2 100 -98 5 1377 369 93 0 0 chr4 103863357 103863411 -51766709 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1377 26 0 0 0 chr4 103864914 103864940 -51765180 + AT_rich Low_complexity Low_complexity 1 26 0 5 1377 305 256 85 8 chr4 103865423 103865541 -51764579 + MIR SINE MIR 70 196 -66 5 1377 195 129 0 0 chr4 103866802 103866833 -51763287 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1377 624 27 0 0 chr4 103867412 103867486 -51762634 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1377 1557 224 62 10 chr4 103867696 103868080 -51762040 + MTD LTR MaLR 5 408 -11 5 1377 847 164 0 40 chr4 103868612 103868764 -51761356 + B1_Mus1 SINE Alu 1 146 -2 5 1377 1320 317 82 55 chr4 103869185 103869695 -51760425 + MER44D DNA MER2_type 20 555 -150 5 1377 232 270 0 0 chr4 103869695 103869758 -51760362 - ID4_ SINE ID -18 65 3 5 1377 1320 317 82 55 chr4 103869758 103869905 -51760215 + MER44D DNA MER2_type 556 695 -10 5 1377 1560 231 72 32 chr4 103869975 103870378 -51759742 - MTD LTR MaLR 0 419 1 5 1377 498 296 0 34 chr4 103871522 103871669 -51758451 - LTR16A1 LTR ERVL -299 157 16 5 1377 279 0 0 0 chr4 103872165 103872196 -51757924 + (TACTG)n Simple_repeat Simple_repeat 4 34 0 5 1377 521 233 60 0 chr4 103872224 103872340 -51757780 - PB1 SINE Alu -2 125 3 5 1377 582 316 41 38 chr4 103874295 103874588 -51755532 + MER102a DNA MER1_type 36 329 -1 5 1377 432 360 71 71 chr4 103875736 103876202 -51753918 - MLT1D LTR MaLR -32 473 8 5 1377 369 0 0 0 chr4 103876244 103876285 -51753835 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1377 740 42 10 0 chr4 103876289 103876385 -51753735 + (GA)n Simple_repeat Simple_repeat 2 98 0 5 1377 183 365 0 23 chr4 103876527 103876614 -51753506 - L2b LINE L2 -321 3054 2970 5 1377 391 344 67 16 chr4 103876660 103876976 -51753144 - L2b LINE L2 -548 2871 2540 5 1377 1177 241 60 43 chr4 103877688 103878039 -51752081 - Lx8 LINE L1 -1 7472 7116 5 1377 608 338 13 4 chr4 103878170 103878396 -51751724 + B4A SINE B4 2 229 -63 5 1377 858 275 5 5 chr4 103878398 103878580 -51751540 + B3 SINE B2 1 181 -35 5 1377 348 24 0 0 chr4 103878580 103878621 -51751499 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1377 858 275 5 5 chr4 103878621 103878650 -51751470 + B3 SINE B2 182 211 -5 5 1377 186 292 60 40 chr4 103879391 103879491 -51750629 + MIRb SINE MIR 26 127 -141 5 1377 378 0 0 0 chr4 103879544 103879586 -51750534 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1377 188 171 0 0 chr4 103879862 103879897 -51750223 - MIR3 SINE MIR -7 201 167 5 1377 243 227 0 0 chr4 103879985 103880051 -51750069 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1377 330 26 0 0 chr4 103880443 103880482 -51749638 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1377 192 40 0 0 chr4 103880787 103880812 -51749308 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1377 432 337 51 88 chr4 103882047 103882320 -51747800 - ORR1E LTR MaLR -20 339 77 5 1377 1106 197 150 59 chr4 103882357 103882697 -51747423 + ORR1C2 LTR MaLR 1 371 -13 5 1377 414 0 0 0 chr4 103882772 103882818 -51747302 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1377 1270 235 76 9 chr4 103882996 103883339 -51746781 + ORR1D1 LTR MaLR 3 368 -6 5 1377 701 314 16 51 chr4 103885881 103886136 -51743984 + B4A SINE B4 47 292 0 5 1377 252 0 0 0 chr4 103886164 103886192 -51743928 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1377 4804 39 2 0 chr4 103886328 103886893 -51743227 - L1_Mus1 LINE L1 0 6567 6002 5 1377 225 0 0 0 chr4 103889760 103889785 -51740335 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1377 378 0 0 0 chr4 103890553 103890595 -51739525 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 5 1377 481 251 48 42 chr4 103891470 103891667 -51738453 + L1MB3 LINE L1 5860 6053 -130 5 1377 298 309 50 102 chr4 103891744 103891811 -51738309 + MLT1B LTR MaLR 20 87 -303 5 1377 504 0 0 0 chr4 103891811 103891867 -51738253 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1377 298 309 50 102 chr4 103891867 103892102 -51738018 + MLT1B LTR MaLR 88 306 -84 5 1377 274 248 138 8 chr4 103892205 103892325 -51737795 + PB1D7 SINE Alu 11 148 -1 5 1377 272 304 37 56 chr4 103893277 103893385 -51736735 - MIRb SINE MIR -117 151 46 5 1377 245 248 145 83 chr4 103894102 103894247 -51735873 + MLT1B LTR MaLR 1 154 -236 5 1377 745 312 56 33 chr4 103894314 103894619 -51735501 - ORR1E LTR MaLR -6 353 42 5 1377 1170 68 0 0 chr4 103894721 103894867 -51735253 - B1_Mus1 SINE Alu 0 148 3 5 1377 204 369 12 0 chr4 103896201 103896285 -51733835 + MIRb SINE MIR 92 176 -92 5 1377 201 318 36 108 chr4 103896578 103896800 -51733320 + MIRc SINE MIR 59 264 -4 5 1377 619 231 35 50 chr4 103897293 103897434 -51732686 - B1_Mur3 SINE Alu -9 140 2 5 1377 328 297 224 0 chr4 103897576 103897758 -51732362 - ID_B1 SINE B4 0 224 2 5 1377 555 16 0 0 chr4 103897777 103897841 -51732279 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1377 297 0 0 0 chr4 103897841 103897873 -51732247 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1377 1105 216 96 26 chr4 103898288 103898601 -51731519 - ORR1D2 LTR MaLR -34 336 2 5 1377 2882 268 116 52 chr4 103898607 103899886 -51730234 - ORR1D2-int LTR MaLR -7 1363 3 5 1377 4055 68 11 15 chr4 103899894 103900427 -51729693 - L1Md_F3 LINE L1 0 6584 6054 5 1377 993 267 74 57 chr4 103900427 103900780 -51729340 - ORR1D2 LTR MaLR -6 364 6 5 1377 1030 161 126 0 chr4 103901635 103901834 -51728286 + URR1A DNA MER1_type 3 226 0 5 1377 203 254 134 0 chr4 103902050 103902117 -51728003 - MIR3 SINE MIR -48 160 85 5 1377 24 91 0 0 chr4 103903185 103903251 -51726869 + AT_rich Low_complexity Low_complexity 1 66 0 5 1377 186 333 0 0 chr4 103903331 103903394 -51726726 - MIR SINE MIR -121 141 79 5 1377 261 0 0 0 chr4 103904585 103904614 -51725506 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1377 207 0 0 0 chr4 103904614 103904637 -51725483 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1377 309 51 0 0 chr4 103905526 103905565 -51724555 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1377 292 164 16 0 chr4 103905945 103906006 -51724114 + Kanga2_a DNA Tc2 719 780 -108 5 1377 552 193 4 8 chr4 103907772 103908025 -51722095 + (TG)n Simple_repeat Simple_repeat 1 251 0 5 1377 548 206 0 11 chr4 103908081 103908263 -51721857 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1377 258 268 77 24 chr4 103908342 103908496 -51721624 - MLT1C LTR MaLR -29 438 284 5 1377 328 250 70 26 chr4 103908548 103908663 -51721457 - MTEb LTR MaLR -1 378 259 5 1377 275 345 49 33 chr4 103908679 103908862 -51721258 - MTEb LTR MaLR -162 197 12 5 1377 271 305 62 62 chr4 103908909 103909087 -51721033 - MLT1C LTR MaLR -289 178 1 5 1377 226 265 70 35 chr4 103909324 103909410 -51720710 - BC1_Mm scRNA scRNA -53 99 11 5 1377 1187 239 52 78 chr4 103909735 103910120 -51720000 + MTE2a LTR MaLR 3 377 -2 5 1377 207 222 0 0 chr4 103910281 103910326 -51719794 - MIR SINE MIR -138 124 80 5 1377 189 260 226 19 chr4 103910949 103911055 -51719065 + MIRb SINE MIR 127 254 -14 5 1377 277 241 54 50 chr4 103912073 103912183 -51717937 - MIR SINE MIR -130 138 25 5 1377 213 316 0 0 chr4 103912286 103912343 -51717777 - MIRb SINE MIR -159 109 53 5 1377 1128 140 125 0 chr4 103913246 103913446 -51716674 + URR1A DNA MER1_type 1 225 -1 5 1377 539 309 132 59 chr4 103913924 103914196 -51715924 - B4A SINE B4 0 292 1 5 1377 404 255 7 0 chr4 103914307 103914452 -51715668 + (TG)n Simple_repeat Simple_repeat 1 146 0 5 1377 1145 146 91 19 chr4 103915070 103915280 -51714840 + URR1A DNA MER1_type 2 226 0 5 1377 278 338 30 0 chr4 103915281 103915414 -51714706 - MIRb SINE MIR -27 241 105 5 1377 271 308 85 23 chr4 103917872 103918048 -51712072 + MIRb SINE MIR 68 254 -14 5 1377 238 214 36 0 chr4 103918245 103918321 -51711799 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 5 1377 238 247 77 22 chr4 103918670 103918761 -51711359 - MIRb SINE MIR -54 214 119 5 1377 181 319 0 0 chr4 103919484 103919531 -51710589 - L2a LINE L2 -20 3406 3360 5 1377 372 353 40 0 chr4 103919752 103919902 -51710218 + MIR SINE MIR 100 255 -7 5 1377 501 17 0 0 chr4 103920094 103920152 -51709968 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1377 347 282 26 0 chr4 103920540 103920618 -51709502 - PB1D10 SINE Alu -35 82 3 5 1377 405 274 58 15 chr4 103921120 103921257 -51708863 + MER20 DNA MER1_type 7 149 -70 5 1377 410 302 51 55 chr4 103921514 103921784 -51708336 + B4 SINE B4 43 269 -23 5 1377 474 88 0 0 chr4 103921804 103921872 -51708248 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1377 258 188 94 0 chr4 103922057 103922121 -51707999 - L1MD3 LINE L1 -184 7811 7742 5 1377 211 195 8 56 chr4 103922993 103923118 -51707002 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1377 623 95 0 9 chr4 103923158 103923264 -51706856 + (CA)n Simple_repeat Simple_repeat 1 105 0 5 1377 519 90 0 0 chr4 103924654 103924732 -51705388 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1377 2266 128 78 10 chr4 103925182 103925569 -51704551 - MTC LTR MaLR -8 413 1 5 1377 456 255 159 9 chr4 103925716 103925948 -51704172 - MLT1F1 LTR MaLR -43 526 236 5 1377 182 311 0 0 chr4 103927304 103927349 -51702771 + L2b LINE L2 3364 3408 -18 5 1377 193 150 43 34 chr4 103927972 103928089 -51702031 + (TTATA)n Simple_repeat Simple_repeat 1 118 0 5 1377 252 301 19 27 chr4 103928249 103928355 -51701765 + MLT1A0 LTR MaLR 20 126 -282 5 1377 698 263 43 28 chr4 103928437 103928648 -51701472 - B3 SINE B2 -1 215 2 5 1377 1045 252 99 35 chr4 103929008 103929353 -51700767 - MTEa LTR MaLR -12 367 1 5 1377 246 309 12 12 chr4 103929463 103929545 -51700575 + ID4_ SINE ID 2 83 0 5 1377 296 77 15 44 chr4 103929645 103929713 -51700407 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1377 825 328 51 0 chr4 103929720 103929976 -51700144 - B4A SINE B4 -22 270 2 5 1377 496 273 65 0 chr4 103931073 103931212 -51698908 + B1F SINE Alu 1 148 -1 5 1377 196 345 96 51 chr4 103931315 103931471 -51698649 - L2a LINE L2 0 3426 3264 6 1377 21 0 0 0 chr4 103931900 103931921 -51698199 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 395 239 0 22 chr4 103933093 103933183 -51696937 - PB1D10 SINE Alu -11 106 19 6 1377 306 222 33 107 chr4 103933105 103933226 -51696894 - MT2B2 LTR ERVL -334 250 139 6 1377 442 203 21 14 chr4 103933557 103933702 -51696418 + (TA)n Simple_repeat Simple_repeat 2 147 0 6 1377 451 324 40 23 chr4 103933731 103933908 -51696212 - B3A SINE B2 -16 182 3 6 1377 211 205 0 0 chr4 103933948 103933987 -51696133 + MIR SINE MIR 33 71 -191 6 1377 188 346 12 0 chr4 103934032 103934113 -51696007 + MIR SINE MIR 181 262 0 6 1377 492 340 51 56 chr4 103934850 103935205 -51694915 + MER63B DNA AcHobo 65 417 -19 6 172 36113 35 0 0 chr4 103935381 103940638 -51689482 + L1Md_T LINE L1 234 5587 -299 6 1378 9124 7 0 0 chr4 103940640 103941636 -51688484 + L1Md_T LINE L1 5590 6585 0 6 1378 294 284 66 38 chr4 103941714 103941820 -51688300 + PB1D10 SINE Alu 1 109 -8 6 1378 195 69 0 0 chr4 103941914 103941943 -51688177 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1378 215 320 86 19 chr4 103942936 103943041 -51687079 + L2b LINE L2 3246 3357 -18 6 1378 651 65 0 0 chr4 103943328 103943420 -51686700 + B1_Mus2 SINE Alu 55 146 -1 6 1378 279 0 0 0 chr4 103943420 103943451 -51686669 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1378 314 282 61 85 chr4 103943476 103943781 -51686339 - L1MEg LINE L1 -3736 3270 2975 6 1378 240 35 0 0 chr4 103943802 103943831 -51686289 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1378 342 0 0 0 chr4 103944121 103944159 -51685961 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1378 248 229 71 0 chr4 103944412 103944482 -51685638 - L1MEg LINE L1 -4948 2386 2312 6 1378 604 344 88 67 chr4 103944521 103945298 -51684822 - L1MEg LINE L1 -4768 2334 1542 6 1378 198 0 0 0 chr4 103945543 103945565 -51684555 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1378 806 274 40 15 chr4 103945836 103946036 -51684084 + B3 SINE B2 1 205 -11 6 1378 1137 67 0 33 chr4 103946058 103946242 -51683878 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 1378 206 267 16 32 chr4 103946253 103946315 -51683805 + MIRc SINE MIR 11 71 -197 6 1378 1184 7 0 0 chr4 103946669 103946812 -51683308 - ORR1A0 LTR MaLR -203 143 1 6 1378 226 220 48 125 chr4 103947242 103947346 -51682774 + B4 SINE B4 1 96 -196 6 1378 212 216 0 19 chr4 103947630 103947682 -51682438 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 6 1378 1267 50 0 0 chr4 103948372 103948513 -51681607 + B1_Mm SINE Alu 1 141 -6 6 1378 198 0 0 0 chr4 103948519 103948541 -51681579 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1378 429 20 0 0 chr4 103948540 103948590 -51681530 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1378 305 255 70 20 chr4 103948590 103948690 -51681430 + L1MCa LINE L1 1901 2005 -4503 6 1378 329 145 16 0 chr4 103949066 103949128 -51680992 + (CACCAT)n Simple_repeat Simple_repeat 4 66 0 6 1378 964 236 88 46 chr4 103949729 103950013 -51680107 + ORR1D2 LTR MaLR 75 370 0 6 1378 205 255 101 10 chr4 103951764 103951863 -51678257 + MIRb SINE MIR 87 194 -74 6 1378 243 333 186 0 chr4 103951937 103952093 -51678027 + MIR SINE MIR 37 221 -41 6 1378 381 346 36 45 chr4 103952367 103952591 -51677529 - LTR52 LTR ERVL -196 225 4 6 1378 183 328 75 0 chr4 103953085 103953152 -51676968 + L3 LINE CR1 4337 4408 -81 6 1378 620 235 0 102 chr4 103954934 103955100 -51675020 - RSINE1 SINE B4 0 165 17 6 1378 303 71 0 0 chr4 103955498 103955540 -51674580 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1378 267 272 87 0 chr4 103955767 103955870 -51674250 + L1MA8 LINE L1 6175 6286 -5 6 1378 214 328 114 16 chr4 103955914 103956159 -51673961 - L2a LINE L2 -172 3254 2986 6 1378 225 369 117 6 chr4 103957152 103957332 -51672788 + MIRb SINE MIR 53 252 -16 6 1378 879 260 43 19 chr4 103957344 103957552 -51672568 + B3 SINE B2 1 213 -3 6 1378 315 340 25 0 chr4 103959094 103959253 -51670867 + (TATATG)n Simple_repeat Simple_repeat 2 164 0 6 1378 379 338 44 63 chr4 103959344 103959502 -51670618 + MER58A DNA MER1_type 2 156 -68 6 1378 206 418 47 42 chr4 103959542 103959732 -51670388 - L2b LINE L2 -6 3369 3179 6 1378 983 212 0 24 chr4 103959865 103960078 -51670042 - Lx6 LINE L1 -687 6773 6566 6 1378 1123 198 78 62 chr4 103960067 103960325 -51669795 + Lx6 LINE L1 7194 7455 -5 6 1378 21 0 0 0 chr4 103960326 103960347 -51669773 + AT_rich Low_complexity Low_complexity 1 21 0 6 1378 367 382 20 8 chr4 103961174 103961427 -51668693 - L2b LINE L2 -494 2925 2670 6 1378 408 326 46 78 chr4 103961765 103961985 -51668135 - MTD LTR MaLR -162 217 22 6 1378 456 67 0 0 chr4 103962066 103962126 -51667994 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1378 751 182 12 0 chr4 103962799 103962964 -51667156 + CT-rich Low_complexity Low_complexity 1 167 0 6 1378 305 343 28 28 chr4 103963026 103963134 -51666986 + MIRc SINE MIR 33 140 -128 6 1378 818 288 53 42 chr4 103963205 103963536 -51666584 - L1MC3 LINE L1 -2 7783 7455 6 1378 941 70 7 0 chr4 103963536 103963679 -51666441 + (CTTTG)n Simple_repeat Simple_repeat 1 144 0 6 1378 818 288 53 42 chr4 103963679 103963724 -51666396 - L1MC3 LINE L1 -331 7454 7403 6 1378 478 257 0 9 chr4 103963895 103964001 -51666119 + PB1D7 SINE Alu 1 105 -15 6 1378 629 308 0 0 chr4 103965889 103966045 -51664075 + RSINE1 SINE B4 2 157 -8 6 1378 524 262 81 69 chr4 103966391 103966551 -51663569 + RSINE1 SINE B4 4 165 0 6 1378 1941 48 9 0 chr4 103966612 103966840 -51663280 - L1Md_A LINE L1 -2 6580 6351 6 1378 11485 77 0 2 chr4 103966841 103968360 -51661760 + L1_Mm LINE L1 2070 3585 -2298 6 1378 2104 219 27 40 chr4 103968346 103968826 -51661294 + Lx9 LINE L1 6516 6989 -655 6 1378 1139 157 30 133 chr4 103968836 103969107 -51661013 - MT2A LTR ERVL -290 243 1 6 1378 430 181 12 0 chr4 103969107 103969190 -51660930 - MERVL_2A-int LTR ERVL 0 5761 5678 6 1378 232 0 82 20 chr4 103969203 103969252 -51660868 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1378 1159 276 85 23 chr4 103969299 103969829 -51660291 + Lx9 LINE L1 7079 7641 -3 6 1378 181 340 19 122 chr4 103970777 103970884 -51659236 - L2c LINE L2 -18 3369 3274 6 1378 250 284 45 0 chr4 103971062 103971129 -51658991 - PB1D7 SINE Alu -3 117 48 6 1378 718 256 48 34 chr4 103971974 103972180 -51657940 - B3 SINE B2 -7 209 1 6 1378 190 364 153 37 chr4 103972261 103972666 -51657454 + L2b LINE L2 2338 2789 -630 6 1378 657 0 0 0 chr4 103972674 103972747 -51657373 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 6 1378 237 348 26 43 chr4 103973093 103973210 -51656910 + L2b LINE L2 3204 3318 -57 6 1378 193 345 57 11 chr4 103973703 103973791 -51656329 + MIR3 SINE MIR 96 187 -21 6 1378 192 348 88 12 chr4 103973838 103973998 -51656122 + MIRc SINE MIR 77 248 -20 6 1378 198 0 0 0 chr4 103974590 103974612 -51655508 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1378 421 337 136 4 chr4 103974740 103975020 -51655100 + Kanga1 DNA Tc2 2 318 -1427 6 1378 193 127 18 35 chr4 103975391 103975448 -51654672 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 6 1378 1070 90 0 6 chr4 103975451 103975630 -51654490 + (TC)n Simple_repeat Simple_repeat 1 178 0 6 1378 238 367 0 12 chr4 103975670 103975750 -51654370 - L3 LINE CR1 -785 3704 3626 6 1378 237 180 0 0 chr4 103976432 103976482 -51653638 + A-rich Low_complexity Low_complexity 1 50 0 6 1378 520 239 149 114 chr4 103977152 103977615 -51652505 + L1MB3 LINE L1 5702 6180 -3 6 1378 853 245 5 35 chr4 103977915 103978114 -51652006 - ORR1D2 LTR MaLR -4 366 174 6 1378 305 174 14 0 chr4 103978638 103978707 -51651413 + CT-rich Low_complexity Low_complexity 2 71 0 6 1378 228 349 110 8 chr4 103978930 103979057 -51651063 - MIRb SINE MIR -88 180 41 6 1378 38 0 0 0 chr4 103979723 103979761 -51650359 + AT_rich Low_complexity Low_complexity 1 38 0 6 1378 245 303 69 52 chr4 103980885 103981059 -51649061 + L1M5 LINE L1 5695 5871 -253 6 1378 414 0 0 0 chr4 103981126 103981172 -51648948 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1378 322 275 143 0 chr4 103982343 103982434 -51647686 + B1F1 SINE Alu 46 149 0 6 1378 1022 273 50 53 chr4 103982993 103983404 -51646716 + MTE2a LTR MaLR 1 405 -14 6 1378 196 278 91 12 chr4 103983436 103983555 -51646565 - MIR SINE MIR -23 245 116 6 1378 1132 83 0 40 chr4 103985187 103985338 -51644782 - B1_Mm SINE Alu 0 147 3 6 1378 256 287 9 168 chr4 103985829 103985942 -51644178 + MIRc SINE MIR 108 202 -66 6 1378 249 33 0 0 chr4 103986223 103986253 -51643867 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 6 1378 183 280 0 0 chr4 103986900 103986950 -51643170 - MIRb SINE MIR -67 201 152 6 1378 399 145 0 0 chr4 103986954 103987023 -51643097 + (CAT)n Simple_repeat Simple_repeat 3 71 0 6 1378 312 300 44 37 chr4 103987245 103987380 -51642740 - MER5B DNA MER1_type -15 163 28 6 1378 2308 299 80 10 chr4 103987650 103988447 -51641673 - Lx8 LINE L1 -363 7110 6258 6 1378 9154 6 0 0 chr4 103988442 103989510 -51640610 - L1Md_T LINE L1 0 6582 5515 6 1378 598 303 89 47 chr4 103989511 103989892 -51640228 - Lx8 LINE L1 -1198 6275 5879 6 1378 1453 238 59 14 chr4 103990761 103991115 -51639005 + ORR1D2 LTR MaLR 1 370 0 6 1378 235 212 73 29 chr4 103991240 103991308 -51638812 + MER112 DNA MER1_type 7 77 -184 6 1378 4620 141 48 88 chr4 103991344 103992271 -51637849 - RMER19B LTR ERVK -12 890 1 6 1378 327 281 126 24 chr4 103992557 103992727 -51637393 - MIR SINE MIR -54 208 30 6 1378 1580 310 36 47 chr4 103994032 103994732 -51635388 + Lx9 LINE L1 6932 7623 -21 6 1378 207 354 12 48 chr4 103994840 103994923 -51635197 + MIR SINE MIR 61 140 -122 6 1378 193 162 27 0 chr4 103994986 103995023 -51635097 - MIRb SINE MIR -38 230 193 6 1378 422 183 26 9 chr4 103995178 103995294 -51634826 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 1378 660 227 12 80 chr4 103995895 103996058 -51634062 + RSINE1 SINE B4 1 152 -13 7 1378 1475 169 4 0 chr4 103997764 103997989 -51632131 + URR1A DNA MER1_type 1 226 0 7 1378 249 276 0 0 chr4 103999382 103999458 -51630662 + A-rich Low_complexity Low_complexity 1 76 0 7 1378 182 300 60 36 chr4 103999583 103999666 -51630454 - MIR SINE MIR -104 104 20 7 1378 715 200 25 12 chr4 103999766 103999928 -51630192 + MER103 DNA DNA 1 164 -2 7 1378 194 206 29 87 chr4 104000706 104000775 -51629345 + L2c LINE L2 3318 3382 -5 1 1378 540 111 0 0 chr4 104000788 104000869 -51629251 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 2 1378 270 0 0 0 chr4 104001463 104001493 -51628627 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 3 1378 389 286 47 16 chr4 104002126 104002254 -51627866 - MER5A1 DNA MER1_type -34 132 1 4 1378 208 343 45 77 chr4 104002346 104002501 -51627619 - MER5B DNA MER1_type -16 162 13 5 1378 704 341 56 32 chr4 104002624 104003033 -51627087 + MLT1E2 LTR MaLR 209 627 0 6 1378 243 0 0 0 chr4 104003162 104003189 -51626931 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1378 203 268 40 66 chr4 104005071 104005147 -51624973 - L2b LINE L2 -15 3360 3287 8 1378 2785 198 128 137 chr4 104005929 104006895 -51623225 - RMER17B LTR ERVK 0 958 1 9 1378 593 180 48 0 chr4 104007300 104007467 -51622653 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 1 1378 294 204 71 10 chr4 104008047 104008146 -51621974 + GA-rich Low_complexity Low_complexity 2 106 0 1 1378 1185 98 0 0 chr4 104008386 104008592 -51621528 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 1 1378 772 204 0 0 chr4 104008592 104008729 -51621391 - B1_Mur4 SINE Alu -13 137 1 1 1378 1393 160 4 4 chr4 104009143 104009369 -51620751 - URR1A DNA MER1_type 0 226 1 1 1378 213 411 0 47 chr4 104010512 104010631 -51619489 + MER91A DNA Tip100 18 131 -65 1 1378 1033 153 111 65 chr4 104010631 104010847 -51619273 + URR1A DNA MER1_type 1 226 0 1 1378 213 411 0 47 chr4 104010847 104010875 -51619245 + MER91A DNA Tip100 132 158 -38 1 1378 643 302 19 14 chr4 104010888 104011103 -51619017 - B3 SINE B2 0 216 1 1 1378 1651 236 14 53 chr4 104013906 104014340 -51615780 + MTD LTR MaLR 1 417 -2 1 1378 396 262 128 66 chr4 104015636 104015869 -51614251 + MIR SINE MIR 22 261 -1 1 1378 242 222 72 24 chr4 104016507 104016590 -51613530 + MIRc SINE MIR 58 144 -124 2 1378 255 322 40 56 chr4 104017531 104017656 -51612464 + MIRb SINE MIR 9 131 -137 2 1378 454 214 186 13 chr4 104017931 104018087 -51612033 + B3A SINE B2 1 183 -15 2 1378 670 331 63 7 chr4 104018675 104018946 -51611174 - RMER15 LTR ERVL -15 560 275 2 1378 477 319 111 4 chr4 104019826 104020078 -51610042 + B4A SINE B4 2 280 -12 2 1378 269 274 0 14 chr4 104020104 104020178 -51609942 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2 1378 258 32 0 0 chr4 104020215 104020246 -51609874 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1378 25 0 0 0 chr4 104020423 104020448 -51609672 + AT_rich Low_complexity Low_complexity 1 25 0 2 1378 339 232 63 0 chr4 104020891 104020986 -51609134 - ORR1E LTR MaLR -223 136 36 2 1378 815 119 37 0 chr4 104022622 104022949 -51607171 + (TG)n Simple_repeat Simple_repeat 1 339 0 2 1378 301 274 122 89 chr4 104022967 104023147 -51606973 - B4 SINE B4 -8 284 99 3 1378 377 314 22 0 chr4 104023148 104023285 -51606835 - B4A SINE B4 -150 142 3 3 1378 21 0 0 0 chr4 104023840 104023861 -51606259 + AT_rich Low_complexity Low_complexity 1 21 0 3 1378 848 254 24 5 chr4 104024371 104024577 -51605543 + B3 SINE B2 1 210 -6 3 1378 25 51 0 0 chr4 104025137 104025176 -51604944 + AT_rich Low_complexity Low_complexity 1 39 0 3 1378 578 70 34 34 chr4 104026061 104026179 -51603941 + (CAGAGA)n Simple_repeat Simple_repeat 1 118 0 3 1378 852 218 40 0 chr4 104026179 104026381 -51603739 - MTEa LTR MaLR -169 210 1 3 1378 387 238 0 36 chr4 104028739 104028822 -51601298 + ID4 SINE ID 4 83 0 3 1378 304 232 126 0 chr4 104029324 104029419 -51600701 + MIR SINE MIR 85 191 -71 3 1378 287 320 105 0 chr4 104029878 104030055 -51600065 - MIR3 SINE MIR -6 202 12 3 1378 24 0 0 0 chr4 104030509 104030533 -51599587 + AT_rich Low_complexity Low_complexity 1 24 0 4 1378 1128 291 82 82 chr4 104031231 104031859 -51598261 - L1ME2 LINE L1 -59 6105 5489 4 1378 495 233 202 54 chr4 104031859 104032027 -51598093 - B3A SINE B2 -4 194 2 4 1378 1128 299 120 60 chr4 104032027 104032456 -51597664 - L1ME2 LINE L1 -676 5488 5046 4 1378 356 238 112 19 chr4 104032456 104032563 -51597557 - PB1D10 SINE Alu 0 117 1 4 1378 774 307 153 40 chr4 104032563 104033047 -51597073 - L1ME2 LINE L1 -1101 5045 4480 4 1378 441 0 0 0 chr4 104033047 104033096 -51597024 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1378 419 347 33 20 chr4 104033096 104033173 -51596947 - L1ME2 LINE L1 -1667 4479 4402 4 1378 486 0 0 0 chr4 104034567 104034621 -51595499 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1378 297 0 0 0 chr4 104034621 104034653 -51595467 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1378 1514 278 134 18 chr4 104035004 104035244 -51594876 + L1MA9 LINE L1 4358 4620 -1520 4 1378 555 62 0 0 chr4 104035244 104035324 -51594796 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 4 1378 1514 278 134 18 chr4 104035324 104035585 -51594535 + L1MA9 LINE L1 4621 4944 -1196 4 1378 1516 33 49 0 chr4 104035585 104035768 -51594352 + B2_Mm1a SINE B2 2 193 0 4 1378 1514 278 134 18 chr4 104035768 104035919 -51594201 + L1MA9 LINE L1 4945 5091 -1049 4 1378 183 80 0 0 chr4 104035919 104035944 -51594176 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1378 1514 278 134 18 chr4 104035944 104036111 -51594009 + L1MA9 LINE L1 5092 5273 -867 4 1378 2023 248 97 32 chr4 104036235 104036700 -51593420 + L1MA9 LINE L1 5424 5931 -381 4 1378 447 19 0 0 chr4 104036700 104036752 -51593368 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1378 2023 248 97 32 chr4 104036752 104037101 -51593019 + L1MA9 LINE L1 5932 6290 -22 4 1378 26 30 0 0 chr4 104040078 104040111 -51590009 + GC_rich Low_complexity Low_complexity 1 33 0 5 1378 228 136 33 33 chr4 104041684 104041745 -51588375 + GA-rich Low_complexity Low_complexity 1 61 0 5 1378 182 343 139 0 chr4 104043644 104043752 -51586368 - MIRm SINE MIR -114 162 40 5 1378 190 0 67 0 chr4 104045209 104045239 -51584881 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 1378 232 234 0 59 chr4 104046017 104046085 -51584035 + MLT1B LTR MaLR 295 358 -32 5 1378 287 328 83 72 chr4 104046779 104047055 -51583065 - ORR1E LTR MaLR -20 339 61 5 1378 1439 79 21 0 chr4 104047232 104047421 -51582699 + B2_Mm2 SINE B2 1 193 -2 5 1378 1050 251 82 62 chr4 104047453 104047805 -51582315 - ORR1E LTR MaLR 0 359 1 5 1378 197 290 16 16 chr4 104048163 104048226 -51581894 + L2c LINE L2 3325 3387 0 6 1378 611 241 55 23 chr4 104049691 104049908 -51580212 - L1M5 LINE L1 -981 5165 4942 6 1378 351 294 104 22 chr4 104050078 104050356 -51579764 - L1M5 LINE L1 -1490 4656 4356 6 1378 1173 225 38 101 chr4 104050899 104051295 -51578825 - MTEa LTR MaLR -8 371 1 6 1378 253 211 0 17 chr4 104052771 104052829 -51577291 - RSINE1 SINE B4 -38 127 71 6 1378 276 296 187 51 chr4 104053733 104053947 -51576173 - LTR33A LTR ERVL -270 250 8 6 1378 247 257 52 39 chr4 104054694 104054771 -51575349 - MIR3 SINE MIR -6 202 125 6 1378 284 269 220 11 chr4 104055205 104055378 -51574742 - ID_B1 SINE B4 -9 215 7 6 1378 221 197 0 15 chr4 104058739 104058806 -51571314 + (ATTG)n Simple_repeat Simple_repeat 3 68 0 6 1378 923 217 18 48 chr4 104058807 104059092 -51571028 - MT2A LTR ERVL -166 435 1 6 1378 1483 308 74 49 chr4 104059333 104061054 -51569066 - L1M2 LINE L1 -3141 3704 1869 6 1378 333 300 38 62 chr4 104061525 104061685 -51568435 + ID_B1 SINE B4 56 211 -13 7 1378 531 268 7 21 chr4 104061553 104061698 -51568422 + B1F SINE Alu 6 148 -1 7 1378 252 0 0 0 chr4 104062456 104062484 -51567636 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1378 377 266 42 67 chr4 104063172 104063337 -51566783 + MER3 DNA MER1_type 33 193 -16 7 1378 497 320 112 71 chr4 104063727 104064050 -51566070 - MLT1K LTR MaLR -183 412 77 7 1378 471 35 0 0 chr4 104065375 104065432 -51564688 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1378 771 224 10 55 chr4 104066874 104067073 -51563047 - B3A SINE B2 -6 192 3 7 1378 180 310 0 40 chr4 104067554 104067628 -51562492 + MIR SINE MIR 75 145 -63 7 1378 233 299 32 75 chr4 104067947 104068041 -51562079 - MIRm SINE MIR -15 261 172 7 1378 194 285 45 10 chr4 104070351 104070473 -51559647 - MIRm SINE MIR -109 167 35 7 1378 1818 211 163 14 chr4 104070510 104071096 -51559024 + Lx9 LINE L1 6970 7643 -1 7 1379 669 165 0 0 chr4 104072589 104072710 -51557410 + (TA)n Simple_repeat Simple_repeat 1 121 0 8 1379 251 336 154 0 chr4 104072710 104072853 -51557267 - MER58A DNA MER1_type -59 165 1 8 1379 1034 203 43 5 chr4 104072879 104073087 -51557033 - B3 SINE B2 0 216 1 8 1379 200 299 55 109 chr4 104073229 104073394 -51556726 - MIRb SINE MIR -36 232 77 8 1379 378 219 135 0 chr4 104074303 104074399 -51555721 + RSINE1 SINE B4 11 119 -46 8 1379 216 0 0 0 chr4 104074427 104074451 -51555669 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1379 199 132 0 73 chr4 104074611 104074652 -51555468 + L2b LINE L2 3333 3370 -5 8 1379 430 279 112 23 chr4 104075797 104075976 -51554144 - MIRc SINE MIR -39 229 25 8 1379 252 0 0 0 chr4 104075976 104076004 -51554116 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 8 1379 287 313 106 6 chr4 104076004 104076024 -51554096 - MIR SINE MIR -238 24 4 8 1379 22 35 0 0 chr4 104076474 104076503 -51553617 + AT_rich Low_complexity Low_complexity 1 29 0 8 1379 372 179 0 0 chr4 104077315 104077393 -51552727 + (GGATG)n Simple_repeat Simple_repeat 4 81 0 9 1379 27 62 0 0 chr4 104078594 104078642 -51551478 + AT_rich Low_complexity Low_complexity 1 48 0 9 1379 204 125 0 0 chr4 104080156 104080188 -51549932 + (CACCAT)n Simple_repeat Simple_repeat 1 32 0 9 1379 401 311 69 93 chr4 104080188 104080404 -51549716 + MER2 DNA MER2_type 1 211 -134 9 1379 802 282 126 36 chr4 104080524 104081025 -51549095 - L1_Mur3 LINE L1 -3203 2677 2132 9 1379 3573 133 11 9 chr4 104081703 104082273 -51547847 - Lx3A LINE L1 -6 6975 6405 9 1379 1338 87 36 5 chr4 104082273 104082469 -51547651 + Lx3B LINE L1 6206 6407 -566 9 1379 181 253 52 94 chr4 104083946 104084042 -51546078 + L2c LINE L2 3242 3333 -54 9 1379 1507 143 0 0 chr4 104084562 104084785 -51545335 + URR1B DNA MER1_type 1 223 -2 9 1379 1141 51 0 0 chr4 104085047 104085185 -51544935 - B1_Mus1 SINE Alu -9 139 2 9 1379 183 42 0 0 chr4 104086072 104086096 -51544024 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1379 283 286 150 8 chr4 104087684 104087804 -51542316 - MER20 DNA MER1_type -82 137 1 1 1379 219 325 60 12 chr4 104088060 104088144 -51541976 + L2b LINE L2 3281 3368 -7 1 1379 180 0 0 0 chr4 104089079 104089099 -51541021 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1379 593 277 61 46 chr4 104091040 104091320 -51538800 + B4A SINE B4 4 287 -5 1 1379 596 325 127 8 chr4 104092560 104092827 -51537293 - MER2 DNA MER2_type -6 339 41 1 1379 266 290 129 7 chr4 104093126 104093265 -51536855 - L1ME3B LINE L1 -295 5945 5790 1 1379 276 53 0 0 chr4 104093930 104093968 -51536152 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1379 234 203 139 63 chr4 104094806 104094885 -51535235 - MLT1A LTR MaLR -269 105 21 1 1379 249 300 52 110 chr4 104095547 104095758 -51534362 - MLT1J2 LTR MaLR -139 272 78 1 1379 492 62 0 0 chr4 104096254 104096318 -51533802 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1379 207 252 169 31 chr4 104098218 104098378 -51531742 - L2a LINE L2 -17 3409 3228 1 1379 223 359 62 8 chr4 104098592 104098721 -51531399 + L2c LINE L2 2927 3062 -325 1 1379 26 0 0 0 chr4 104099860 104099886 -51530234 + AT_rich Low_complexity Low_complexity 1 26 0 1 1379 456 317 78 9 chr4 104100873 104101105 -51529015 - MLT2D LTR ERVL -83 331 84 1 1379 209 284 64 9 chr4 104101484 104101594 -51528526 - MIRb SINE MIR -60 208 93 1 1379 456 19 0 0 chr4 104102146 104102199 -51527921 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1379 260 122 41 0 chr4 104105096 104105145 -51524975 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 1 1379 258 32 0 0 chr4 104105145 104105176 -51524944 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1379 364 327 19 6 chr4 104105351 104105511 -51524609 + CT-rich Low_complexity Low_complexity 2 163 0 1 1379 189 238 92 31 chr4 104106345 104106410 -51523710 - MIR SINE MIR -102 160 92 1 1379 876 146 14 14 chr4 104106773 104106919 -51523201 + B1_Mm SINE Alu 2 147 0 1 1379 273 345 14 40 chr4 104107580 104107728 -51522392 + MIRb SINE MIR 10 153 -115 1 1379 252 312 0 0 chr4 104108195 104108275 -51521845 + MIR SINE MIR 114 193 -69 1 1379 449 246 25 0 chr4 104108535 104108657 -51521463 + RMER15 LTR ERVL 422 546 -29 1 1379 830 262 106 6 chr4 104110649 104111060 -51519060 + L1MA6 LINE L1 5628 6120 -180 1 1379 432 267 109 22 chr4 104111149 104111287 -51518833 + ID_B1 SINE B4 73 222 -2 1 1379 926 123 0 11 chr4 104111666 104111847 -51518273 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1379 181 250 0 0 chr4 104115260 104115300 -51514820 - MIRb SINE MIR -10 258 219 1 1379 407 318 15 0 chr4 104115813 104115945 -51514175 - MIR SINE MIR 0 262 129 1 1379 291 292 44 26 chr4 104118366 104118509 -51511611 - MIRb SINE MIR -84 192 43 1 1379 237 83 0 0 chr4 104118542 104118578 -51511542 + (CTG)n Simple_repeat Simple_repeat 2 37 0 1 1379 399 325 64 87 chr4 104120067 104120411 -51509709 - MER2 DNA MER2_type -2 343 8 1 1379 388 232 20 10 chr4 104121190 104121290 -51508830 - PB1D10 SINE Alu -2 115 15 1 1379 406 273 86 52 chr4 104121893 104122067 -51508053 + MLT1A0 LTR MaLR 112 291 -74 1 1379 646 292 48 68 chr4 104125187 104125496 -51504624 + L3 LINE CR1 4128 4430 -59 1 1379 627 0 36 0 chr4 104126363 104126446 -51503674 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1379 319 340 19 13 chr4 104126455 104126610 -51503510 - B4A SINE B4 -11 281 126 1 1379 192 250 111 0 chr4 104126844 104126916 -51503204 + MIR SINE MIR 68 147 -115 1 1379 222 308 13 13 chr4 104129610 104129689 -51500431 + (TATG)n Simple_repeat Simple_repeat 3 81 0 1 1379 657 286 61 29 chr4 104129692 104129969 -51500151 - B4A SINE B4 -6 286 1 1 1379 391 316 152 31 chr4 104130365 104130667 -51499453 - MLT1F2 LTR MaLR -15 554 218 1 1379 405 329 57 0 chr4 104131009 104131167 -51498953 - MLT1F2 LTR MaLR -389 171 5 1 1379 870 177 1 0 chr4 104132878 104133116 -51497004 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 1 1379 1711 26 0 0 chr4 104133116 104133308 -51496812 - B2_Mm1a SINE B2 0 193 2 1 1379 413 209 9 0 chr4 104133308 104133409 -51496711 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 1 1379 335 290 0 10 chr4 104133417 104133518 -51496602 + ORSL DNA Tip100 1 100 -175 1 1379 414 208 0 0 chr4 104134811 104134955 -51495165 + CT-rich Low_complexity Low_complexity 2 145 0 1 1379 402 21 0 0 chr4 104134955 104135002 -51495118 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1379 213 39 0 0 chr4 104135002 104135028 -51495092 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1 1379 295 275 9 29 chr4 104135785 104135890 -51494230 + CT-rich Low_complexity Low_complexity 1 103 0 1 1379 190 330 29 10 chr4 104136245 104136349 -51493771 + L2a LINE L2 3214 3319 -107 1 1379 468 0 0 0 chr4 104137494 104137546 -51492574 + (CTG)n Simple_repeat Simple_repeat 1 52 0 1 1379 519 17 0 0 chr4 104137546 104137606 -51492514 + (TTC)n Simple_repeat Simple_repeat 2 61 0 1 1379 244 185 0 30 chr4 104138061 104138128 -51491992 + T-rich Low_complexity Low_complexity 1 65 0 1 1379 315 0 0 0 chr4 104138132 104138167 -51491953 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1379 305 197 0 14 chr4 104138952 104139024 -51491096 + GA-rich Low_complexity Low_complexity 1 71 0 1 1379 276 149 0 0 chr4 104139058 104139105 -51491015 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1379 189 94 0 0 chr4 104139591 104139623 -51490497 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1379 365 58 0 19 chr4 104141067 104141120 -51489000 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1 1379 234 258 30 0 chr4 104141986 104142052 -51488068 - MLT1D LTR MaLR -436 69 2 1 1379 226 214 33 67 chr4 104142172 104142262 -51487858 - MLT1E2 LTR MaLR -534 93 7 1 1379 218 304 51 61 chr4 104142484 104142582 -51487538 + MER5B DNA MER1_type 7 103 -75 1 1379 390 21 0 0 chr4 104143142 104143189 -51486931 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1379 228 227 29 43 chr4 104144291 104144360 -51485760 + (TCTCTG)n Simple_repeat Simple_repeat 2 69 0 1 1379 384 244 123 18 chr4 104144903 104145066 -51485054 - L1MC4 LINE L1 -122 7920 7741 1 1379 387 0 0 0 chr4 104146441 104146484 -51483636 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1379 213 39 0 0 chr4 104146484 104146509 -51483611 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1379 207 0 0 0 chr4 104147066 104147089 -51483031 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1379 503 308 49 68 chr4 104147530 104147582 -51482538 - L1MB7 LINE L1 -21 6163 6109 1 1379 1627 22 0 16 chr4 104147582 104147770 -51482350 + B2_Mm1t SINE B2 2 186 -7 1 1379 503 308 49 68 chr4 104147770 104148128 -51481992 - L1MB7 LINE L1 -76 6108 5761 1 1379 218 359 97 5 chr4 104148138 104148323 -51481797 + MIRb SINE MIR 16 217 -51 1 1379 182 392 20 10 chr4 104149457 104149555 -51480565 - MIRb SINE MIR -86 182 84 1 1379 193 196 196 0 chr4 104152264 104152320 -51477800 - MER5A DNA MER1_type -120 69 3 1 1379 3163 56 2 10 chr4 104152742 104153141 -51476979 + MTA_Mm LTR MaLR 1 396 0 1 1379 243 152 0 0 chr4 104153173 104153219 -51476901 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 1 1379 304 154 38 9 chr4 104153221 104153326 -51476794 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1379 622 156 40 6 chr4 104153357 104153531 -51476589 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1379 211 128 81 11 chr4 104153572 104153659 -51476461 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1379 331 378 17 47 chr4 104154414 104154647 -51475473 + MIRb SINE MIR 35 260 -8 1 1379 240 312 88 38 chr4 104154740 104154900 -51475220 - MLT1B LTR MaLR 0 390 223 1 1379 265 298 0 47 chr4 104154926 104155053 -51475067 + CT-rich Low_complexity Low_complexity 3 123 0 1 1379 22 0 0 0 chr4 104155695 104155717 -51474403 + AT_rich Low_complexity Low_complexity 1 22 0 1 1379 339 238 252 8 chr4 104158139 104158266 -51471854 + MTE2b LTR MaLR 1 158 -221 1 1379 1064 267 97 29 chr4 104158308 104158659 -51471461 + MTE2a LTR MaLR 1 375 -4 1 1379 213 143 0 23 chr4 104159104 104159147 -51470973 + T-rich Low_complexity Low_complexity 2 43 0 1 1379 4879 57 0 19 chr4 104159158 104159785 -51470335 - L1Md_F2 LINE L1 -2 6580 5966 1 1379 808 241 40 35 chr4 104162009 104162207 -51467913 + B3 SINE B2 2 200 -16 1 1379 189 171 0 0 chr4 104165484 104165519 -51464601 + CT-rich Low_complexity Low_complexity 3 37 0 1 1379 411 21 0 0 chr4 104165745 104165793 -51464327 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1379 575 143 19 0 chr4 104166728 104166833 -51463287 + GA-rich Low_complexity Low_complexity 1 107 0 1 1379 311 267 28 37 chr4 104166836 104166945 -51463175 - LTR16B2 LTR ERVL -153 309 202 1 1379 441 0 0 0 chr4 104168913 104168962 -51461158 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1379 612 73 0 0 chr4 104168980 104169062 -51461058 + (TCC)n Simple_repeat Simple_repeat 3 84 0 1 1379 203 55 26 53 chr4 104169224 104169262 -51460858 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 1 1379 446 325 129 34 chr4 104169904 104170254 -51459866 + LTR33A LTR ERVL 126 508 -12 1 1379 257 319 111 0 chr4 104171718 104171853 -51458267 - MLT1D LTR MaLR -89 416 267 1 1379 1272 227 80 19 chr4 104172510 104172874 -51457246 - RMER20A LTR ERVK -107 409 24 1 1379 210 143 0 0 chr4 104173742 104173777 -51456343 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 1 1379 274 301 85 11 chr4 104176766 104176860 -51453260 + MIRb SINE MIR 38 138 -130 1 1379 180 0 0 0 chr4 104177097 104177117 -51453003 + (CACCAT)n Simple_repeat Simple_repeat 5 24 0 1 1379 285 146 0 0 chr4 104177793 104177830 -51452290 + (GGA)n Simple_repeat Simple_repeat 2 38 0 1 1379 198 0 0 0 chr4 104177830 104177852 -51452268 + (CAGAGA)n Simple_repeat Simple_repeat 1 22 0 1 1379 285 146 0 0 chr4 104177852 104177869 -51452251 + (GGA)n Simple_repeat Simple_repeat 3 19 0 1 1379 738 102 0 0 chr4 104179263 104179390 -51450730 + (GA)n Simple_repeat Simple_repeat 2 128 0 2 1379 696 307 73 18 chr4 104179846 104179926 -51450194 + B4 SINE B4 2 80 -212 2 1379 183 28 83 0 chr4 104179926 104179962 -51450158 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2 1379 696 307 73 18 chr4 104179962 104180153 -51449967 + B4 SINE B4 81 288 -4 2 1379 253 289 115 15 chr4 104180221 104180351 -51449769 - MIR SINE MIR -119 143 1 2 1379 207 100 0 0 chr4 104181151 104181181 -51448939 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1379 372 283 71 21 chr4 104184860 104185001 -51445119 - MER2 DNA MER2_type -63 282 135 2 1379 715 243 175 0 chr4 104185146 104185488 -51444632 - MTD LTR MaLR -14 405 5 2 1379 359 98 16 0 chr4 104187205 104187266 -51442854 + (CTGGGG)n Simple_repeat Simple_repeat 1 62 0 2 1379 186 43 0 0 chr4 104188700 104188723 -51441397 + (AGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1379 378 0 0 0 chr4 104189659 104189701 -51440419 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1379 201 154 0 0 chr4 104190777 104190816 -51439304 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1379 578 306 150 31 chr4 104190838 104191098 -51439022 - B4A SINE B4 0 292 2 2 1379 1339 105 0 10 chr4 104191318 104191510 -51438610 - B2_Mm2 SINE B2 -5 190 1 2 1379 723 95 0 0 chr4 104191789 104191894 -51438226 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 2 1379 377 356 66 39 chr4 104192739 104193072 -51437048 - MLT1J1 LTR MaLR -60 384 43 2 1379 25 0 0 0 chr4 104193628 104193653 -51436467 + AT_rich Low_complexity Low_complexity 1 25 0 2 1379 210 158 26 0 chr4 104194822 104194860 -51435260 + GA-rich Low_complexity Low_complexity 3 41 0 2 1379 507 261 29 29 chr4 104195524 104195662 -51434458 + B1F SINE Alu 3 140 -9 2 1379 351 96 0 0 chr4 104196021 104196073 -51434047 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1379 348 24 0 0 chr4 104197498 104197539 -51432581 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1379 383 243 0 10 chr4 104198112 104198216 -51431904 - Lx9 LINE L1 -26 7618 7516 2 1379 297 75 0 0 chr4 104198218 104198258 -51431862 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1379 31 0 0 0 chr4 104198434 104198465 -51431655 + AT_rich Low_complexity Low_complexity 1 31 0 2 1379 758 270 139 24 chr4 104198476 104198697 -51431423 - Lx8 LINE L1 -19 7454 7205 2 1379 2434 101 3 0 chr4 104198697 104199023 -51431097 + ORR1A2 LTR MaLR 1 327 0 2 1379 758 270 139 24 chr4 104199023 104199131 -51430989 - Lx8 LINE L1 -269 7204 7087 2 1379 1014 150 0 16 chr4 104199775 104199958 -51430162 + URR1B DNA MER1_type 46 225 0 2 1379 201 360 19 29 chr4 104200804 104200907 -51429213 - MER5A DNA MER1_type -72 117 16 2 1380 480 130 0 0 chr4 104202720 104202812 -51427308 + (ACTG)n Simple_repeat Simple_repeat 3 94 0 2 1380 279 331 36 30 chr4 104203489 104203654 -51426466 - MIRb SINE MIR -15 253 88 2 1380 943 319 50 13 chr4 104203881 104204265 -51425855 + MLT1E2 LTR MaLR 230 627 0 2 1380 385 314 88 0 chr4 104204317 104204454 -51425666 - RMER30 DNA MER1_type -29 173 25 2 1380 659 283 111 30 chr4 104204552 104204814 -51425306 + B4 SINE B4 10 292 0 2 1380 204 97 0 0 chr4 104204829 104204860 -51425260 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1380 746 273 12 0 chr4 104207215 104207387 -51422733 - B3 SINE B2 -42 174 1 2 1380 215 160 39 20 chr4 104207783 104207834 -51422286 + B1F SINE Alu 98 149 0 2 1380 324 296 76 38 chr4 104208370 104208528 -51421592 - MIRb SINE MIR -100 168 5 2 1380 555 252 116 27 chr4 104209600 104209747 -51420373 + RSINE1 SINE B4 6 165 0 2 1380 216 0 0 0 chr4 104209751 104209775 -51420345 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1380 414 57 0 0 chr4 104209775 104209828 -51420292 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1380 626 258 44 25 chr4 104210070 104210229 -51419891 - RSINE1 SINE B4 0 165 4 2 1380 301 317 55 0 chr4 104210456 104210577 -51419543 + B3A SINE B2 41 168 -30 2 1380 222 128 0 0 chr4 104210577 104210616 -51419504 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1380 301 317 55 0 chr4 104210616 104210639 -51419481 + B3A SINE B2 169 192 -6 2 1380 238 289 96 7 chr4 104210881 104211017 -51419103 - L1M5 LINE L1 -516 5657 5510 2 1380 242 329 46 20 chr4 104211286 104211438 -51418682 + L1M5 LINE L1 4584 4739 -1407 2 1380 261 306 30 13 chr4 104211912 104212037 -51418083 + L2a LINE L2 3244 3426 0 2 1380 258 61 61 0 chr4 104212283 104212332 -51417788 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 2 1380 319 21 0 40 chr4 104213277 104213327 -51416793 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1380 393 271 200 14 chr4 104213421 104213631 -51416489 - MLT1E1 LTR MaLR 0 654 406 2 1380 310 301 57 74 chr4 104213970 104214146 -51415974 + Charlie18a DNA MER1_type 56 228 -114 2 1380 180 347 13 26 chr4 104214306 104214383 -51415737 - MIR SINE MIR -113 149 74 2 1380 333 284 142 20 chr4 104215825 104216013 -51414107 + MLT1A1 LTR MaLR 23 220 -145 2 1380 579 180 0 0 chr4 104216136 104216247 -51413873 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 1380 180 326 59 39 chr4 104216270 104216372 -51413748 + L2b LINE L2 3271 3374 -1 2 1380 210 0 23 91 chr4 104216610 104216654 -51413466 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 2 1380 534 216 141 25 chr4 104216848 104217090 -51413030 + MER33 DNA MER1_type 1 270 -54 2 1380 182 320 50 10 chr4 104217929 104218030 -51412090 - MIRm SINE MIR -124 152 48 2 1380 306 0 0 0 chr4 104219074 104219108 -51411012 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1380 28 0 0 0 chr4 104219145 104219173 -51410947 + AT_rich Low_complexity Low_complexity 1 28 0 2 1380 252 0 0 0 chr4 104219375 104219403 -51410717 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1380 414 339 33 33 chr4 104219409 104219589 -51410531 - MIRb SINE MIR -74 194 11 2 1380 184 179 26 0 chr4 104220240 104220279 -51409841 + L2b LINE L2 3335 3374 -1 2 1380 204 192 0 88 chr4 104220648 104220705 -51409415 + MIRm SINE MIR 107 158 -110 2 1380 387 0 0 0 chr4 104220944 104220987 -51409133 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1380 320 233 44 58 chr4 104222845 104222982 -51407138 + MIRb SINE MIR 68 202 -66 2 1380 361 171 116 9 chr4 104223775 104223887 -51406233 + MER2 DNA MER2_type 86 209 -136 2 1380 229 173 77 0 chr4 104223961 104224013 -51406107 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 2 1380 294 183 11 68 chr4 104225390 104225478 -51404642 + MIRc SINE MIR 174 256 -12 2 1380 191 114 29 0 chr4 104226142 104226177 -51403943 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2 1380 207 279 71 29 chr4 104226275 104226345 -51403775 - L2b LINE L2 -27 3348 3276 2 1380 329 0 24 0 chr4 104226826 104226867 -51403253 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1380 499 320 35 24 chr4 104227295 104227556 -51402564 + L1MA4A LINE L1 5615 5942 -361 2 1380 182 398 18 9 chr4 104230100 104230214 -51399906 + MIRc SINE MIR 31 145 -123 2 1380 253 276 26 13 chr4 104231167 104231244 -51398876 + ID2 SINE ID 1 78 -5 2 1380 486 49 0 0 chr4 104232213 104232274 -51397846 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1380 196 263 149 31 chr4 104232903 104233064 -51397056 - MIR SINE MIR 0 262 83 2 1380 305 216 68 0 chr4 104233540 104233614 -51396506 + L1MA8 LINE L1 6212 6290 -1 2 1380 436 153 204 0 chr4 104233622 104233720 -51396400 + L1MB7 LINE L1 6048 6165 -19 2 1380 201 132 0 0 chr4 104233879 104233917 -51396203 + (CTG)n Simple_repeat Simple_repeat 1 38 0 2 1380 291 282 0 0 chr4 104233920 104233998 -51396122 + (TGG)n Simple_repeat Simple_repeat 3 80 0 2 1380 248 287 7 14 chr4 104234079 104234165 -51395955 - MIR SINE MIR -119 149 62 2 1380 957 217 51 23 chr4 104235638 104235855 -51394265 - URR1B DNA MER1_type -2 223 1 2 1380 218 269 30 0 chr4 104235871 104235938 -51394182 + MIR SINE MIR 81 149 -59 2 1380 390 42 0 0 chr4 104235939 104235987 -51394133 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1380 405 282 29 52 chr4 104236127 104236299 -51393821 + MER5A DNA MER1_type 1 168 -21 2 1380 201 246 0 0 chr4 104237364 104237429 -51392691 + (CATG)n Simple_repeat Simple_repeat 1 65 0 2 1380 266 246 92 0 chr4 104237446 104237511 -51392609 - ID4 SINE ID -10 73 3 2 1380 469 280 107 63 chr4 104238213 104238419 -51391701 + B3 SINE B2 2 216 0 2 1380 297 0 0 0 chr4 104240921 104240954 -51389166 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1380 681 13 0 0 chr4 104240954 104241031 -51389089 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1380 456 19 0 0 chr4 104242464 104242517 -51387603 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1380 427 336 0 0 chr4 104242589 104242726 -51387394 + MER3 DNA MER1_type 8 144 -65 2 1380 207 0 0 0 chr4 104242851 104242874 -51387246 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 2 1380 249 57 0 0 chr4 104246548 104246583 -51383537 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 2 1380 209 98 24 0 chr4 104246708 104246749 -51383371 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1380 524 292 92 40 chr4 104246797 104247025 -51383095 - B4A SINE B4 -52 240 1 2 1380 958 247 56 78 chr4 104247711 104248032 -51382088 - ORR1D2 LTR MaLR 0 370 57 2 1380 7145 107 20 6 chr4 104248032 104248732 -51381388 - Lx3_Mus LINE L1 -387 6622 5925 2 1380 414 0 0 0 chr4 104248732 104248778 -51381342 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2 1380 7145 77 1 3 chr4 104248778 104249438 -51380682 - Lx3_Mus LINE L1 -1085 5924 5253 2 1380 5549 62 18 8 chr4 104249434 104250172 -51379948 + Lx3_Mus LINE L1 4512 5256 -630 2 1380 561 112 0 0 chr4 104250182 104250262 -51379858 - RMER17C LTR ERVK -330 80 1 2 1380 714 208 0 0 chr4 104251826 104251980 -51378140 + (CA)n Simple_repeat Simple_repeat 1 154 0 2 1380 466 284 54 66 chr4 104252078 104252244 -51377876 - RSINE1 SINE B4 0 165 2 3 1380 297 68 0 0 chr4 104252508 104252552 -51377568 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 3 1380 592 305 86 43 chr4 104253164 104253214 -51376906 + RMER5 LTR ERV1 146 185 -349 3 1380 225 0 0 0 chr4 104253214 104253239 -51376881 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1380 592 305 86 43 chr4 104253239 104253561 -51376559 + RMER5 LTR ERV1 186 533 -1 3 1380 526 334 83 33 chr4 104253561 104253959 -51376161 + MLT1C LTR MaLR 50 467 0 3 1380 225 303 53 21 chr4 104255110 104255274 -51374846 + MIR SINE MIR 1 169 -93 3 1380 182 383 71 11 chr4 104255477 104255659 -51374461 + MIRb SINE MIR 53 245 -23 3 1380 22 56 0 0 chr4 104255850 104255886 -51374234 + AT_rich Low_complexity Low_complexity 1 36 0 3 1380 532 0 29 0 chr4 104256729 104256797 -51373323 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1380 1289 114 0 30 chr4 104259154 104259353 -51370767 + B2_Mm2 SINE B2 3 195 0 3 1380 279 0 0 0 chr4 104259421 104259452 -51370668 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 3 1380 877 151 6 11 chr4 104260798 104260874 -51369246 + T-rich Low_complexity Low_complexity 104 180 0 3 1380 1240 34 0 0 chr4 104260874 104261020 -51369100 - B1_Mus2 SINE Alu 0 147 2 3 1380 877 151 6 11 chr4 104261020 104261124 -51368996 + T-rich Low_complexity Low_complexity 1 103 0 3 1380 222 275 0 28 chr4 104261255 104261326 -51368794 + CT-rich Low_complexity Low_complexity 5 73 0 3 1380 251 209 21 236 chr4 104261921 104262065 -51368055 - MLT1A LTR MaLR -237 137 25 3 1380 1110 247 118 14 chr4 104262458 104262807 -51367313 - MTD LTR MaLR -25 394 10 3 1380 405 0 0 0 chr4 104263113 104263158 -51366962 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1380 361 229 24 0 chr4 104264433 104264516 -51365604 + L1M5 LINE L1 5731 5815 -309 3 1380 201 74 0 0 chr4 104264578 104264605 -51365515 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1380 397 162 0 0 chr4 104264613 104264681 -51365439 + ID4 SINE ID 2 69 -14 3 1380 258 107 46 69 chr4 104264970 104265100 -51365020 + T-rich Low_complexity Low_complexity 2 128 0 3 1380 459 0 0 0 chr4 104265894 104265945 -51364175 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1380 417 70 0 0 chr4 104266273 104266330 -51363790 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1380 514 301 173 0 chr4 104266338 104266564 -51363556 - B4 SINE B4 -26 266 2 3 1380 290 272 65 12 chr4 104269675 104269848 -51360272 + MLT1B LTR MaLR 175 352 -38 3 1380 283 238 80 45 chr4 104272062 104272150 -51357970 - RMER10A LTR ERVL -34 408 318 3 1380 272 150 33 0 chr4 104272234 104272294 -51357826 + GA-rich Low_complexity Low_complexity 3 64 0 3 1380 474 304 166 30 chr4 104274351 104274495 -51355625 - ORR1E-int LTR MaLR -1218 362 217 3 1380 569 72 29 48 chr4 104274495 104274598 -51355522 + L1Md_F2 LINE L1 6480 6580 -2 3 1380 474 304 166 30 chr4 104274598 104274748 -51355372 - ORR1E-int LTR MaLR -1364 216 28 3 1380 890 285 52 79 chr4 104274770 104275139 -51354981 - ORR1E LTR MaLR 0 359 1 3 1380 180 0 0 0 chr4 104276703 104276723 -51353397 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 1380 375 23 0 0 chr4 104278956 104279000 -51351120 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1380 290 341 35 28 chr4 104279506 104279648 -51350472 - LTR79 LTR ERVL -3 524 382 3 1380 616 299 159 28 chr4 104283019 104283377 -51346743 - MLT1A1 LTR MaLR -2 406 2 3 1380 361 277 81 32 chr4 104287191 104287314 -51342806 + B3A SINE B2 1 129 -69 3 1380 426 85 0 0 chr4 104287323 104287382 -51342738 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1380 264 181 68 57 chr4 104287409 104287497 -51342623 + L1MB4 LINE L1 6091 6179 -1 3 1380 206 341 34 11 chr4 104287505 104287594 -51342526 - MIRb SINE MIR 0 268 178 3 1380 228 339 51 0 chr4 104287982 104288100 -51342020 - MIR SINE MIR -30 232 109 3 1380 459 334 113 63 chr4 104288329 104288754 -51341366 - MER74B LTR ERVL -111 511 66 3 1380 761 190 76 18 chr4 104289891 104290062 -51340058 - B3 SINE B2 -6 210 30 3 1380 362 302 107 7 chr4 104291337 104291477 -51338643 - MIR SINE MIR -81 181 28 3 1380 292 262 11 56 chr4 104291740 104291829 -51338291 - L2c LINE L2 -49 3338 3254 3 1380 1124 58 0 0 chr4 104292739 104292876 -51337244 - B1_Mm SINE Alu -10 137 1 3 1380 814 267 107 30 chr4 104292981 104293317 -51336803 + MER20B DNA MER1_type 60 421 -362 3 1380 359 281 0 0 chr4 104293596 104293678 -51336442 + ID2 SINE ID 2 83 0 3 1380 677 85 8 25 chr4 104293977 104294097 -51336023 + Lx4A LINE L1 6938 7055 -3 3 1380 377 309 49 26 chr4 104294845 104295108 -51335012 - LTR48B LTR ERV1 -177 610 149 3 1380 251 309 0 0 chr4 104295191 104295285 -51334835 - L1MA8 LINE L1 -197 6094 6001 3 1380 539 274 183 75 chr4 104295309 104295700 -51334420 - Lx8 LINE L1 -1 7472 7041 3 1380 294 29 0 0 chr4 104295700 104295735 -51334385 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1380 539 274 183 75 chr4 104295735 104295769 -51334351 - Lx8 LINE L1 -433 7040 7003 3 1380 220 273 55 0 chr4 104295897 104295952 -51334168 + ID4_ SINE ID 22 79 -4 3 1380 324 288 45 9 chr4 104295944 104296056 -51334064 + ID_B1 SINE B4 109 224 0 3 1380 336 143 139 26 chr4 104296462 104296577 -51333543 - Lx9 LINE L1 -18 7626 7499 3 1380 209 257 160 6 chr4 104296797 104296953 -51333167 - MIR SINE MIR -85 183 1 3 1380 7555 29 0 0 chr4 104300217 104301083 -51329037 + L1Md_T LINE L1 5717 6582 0 3 1380 225 125 54 0 chr4 104301093 104301149 -51328971 + GA-rich Low_complexity Low_complexity 2 60 0 3 1380 184 333 175 10 chr4 104301656 104301759 -51328361 - MIRb SINE MIR -78 190 71 3 1380 3820 32 0 2 chr4 104302823 104303268 -51326852 + L1Md_F2 LINE L1 6139 6582 0 3 1380 345 173 18 26 chr4 104304113 104304226 -51325894 + (TA)n Simple_repeat Simple_repeat 1 112 0 3 1380 315 0 0 0 chr4 104304264 104304299 -51325821 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1380 885 280 73 11 chr4 104304299 104304653 -51325467 + L1MB3 LINE L1 5785 6160 -23 3 1380 183 392 10 0 chr4 104304856 104304958 -51325162 - MIRb SINE MIR -113 155 53 3 1380 788 194 16 49 chr4 104306485 104306669 -51323451 + B3A SINE B2 6 183 -15 3 1380 553 194 31 0 chr4 104306936 104307096 -51323024 + (TA)n Simple_repeat Simple_repeat 1 165 0 3 1380 521 271 69 37 chr4 104308266 104308454 -51321666 - MER3 DNA MER1_type -5 204 11 3 1380 192 40 0 0 chr4 104309358 104309383 -51320737 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1380 464 276 163 20 chr4 104310118 104310314 -51319806 + MER58B DNA MER1_type 115 338 -3 3 1380 208 163 122 0 chr4 104310515 104310564 -51319556 + MIR SINE MIR 122 176 -86 3 1380 198 0 0 0 chr4 104311697 104311719 -51318401 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1380 193 361 12 0 chr4 104312712 104312795 -51317325 + MIR SINE MIR 104 187 -75 3 1380 22 35 0 0 chr4 104313028 104313057 -51317063 + AT_rich Low_complexity Low_complexity 1 29 0 3 1380 202 283 21 63 chr4 104315790 104315919 -51314201 + MIR SINE MIR 98 224 -52 3 1380 204 40 0 0 chr4 104316074 104316099 -51314021 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 3 1380 207 0 0 0 chr4 104316543 104316566 -51313554 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1380 31 0 0 0 chr4 104317439 104317470 -51312650 + AT_rich Low_complexity Low_complexity 1 31 0 3 1380 294 106 0 0 chr4 104317513 104317560 -51312560 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1380 1102 72 7 0 chr4 104317779 104317931 -51312189 + B2_Mm1a SINE B2 1 153 -40 3 1380 374 0 0 21 chr4 104317931 104317978 -51312142 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 3 1380 804 271 106 19 chr4 104319056 104319368 -51310752 + ORR1E LTR MaLR 21 359 0 3 1380 1163 285 113 3 chr4 104319370 104319760 -51310360 + ORR1E-int LTR MaLR 1 433 -1147 3 1380 1502 215 39 3 chr4 104319763 104320099 -51310021 - ORR1D1 LTR MaLR -3 371 24 3 1380 399 184 58 0 chr4 104320148 104320235 -51309885 + ORR1E-int LTR MaLR 632 723 -857 3 1380 721 164 0 0 chr4 104320239 104320361 -51309759 + B1_Mus1 SINE Alu 6 127 -21 3 1380 1841 290 123 29 chr4 104320260 104321087 -51309033 + ORR1E-int LTR MaLR 673 1527 -53 3 1380 725 193 87 15 chr4 104321087 104321282 -51308838 + ORR1E LTR MaLR 1 209 -150 3 1380 921 180 0 5 chr4 104321282 104321732 -51308388 + (TAGTG)n Simple_repeat Simple_repeat 1 447 0 3 1380 367 269 144 0 chr4 104322054 104322221 -51307899 - MER2 DNA MER2_type -55 290 100 3 1380 430 188 61 30 chr4 104323579 104323678 -51306442 - B1F SINE Alu -1 148 47 3 1380 1000 299 14 57 chr4 104323679 104324033 -51306087 + MTE2b LTR MaLR 1 339 -40 3 1380 217 321 118 49 chr4 104324175 104324319 -51305801 + MIR SINE MIR 99 252 -10 3 1380 188 289 39 0 chr4 104324988 104325040 -51305080 + MIR SINE MIR 28 81 -181 3 1380 517 341 43 19 chr4 104325692 104325901 -51304219 - MIR SINE MIR -21 241 28 3 1380 603 319 12 6 chr4 104326900 104327061 -51303059 + RSINE1 SINE B4 2 163 -2 3 1380 267 31 0 0 chr4 104327517 104327549 -51302571 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1380 365 164 28 28 chr4 104327937 104328044 -51302076 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 3 1380 237 132 0 0 chr4 104328044 104328082 -51302038 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1380 240 313 15 0 chr4 104328145 104328212 -51301908 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1380 207 0 0 0 chr4 104329123 104329146 -51300974 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1380 1415 222 75 28 chr4 104330828 104331035 -51299085 + MTD LTR MaLR 2 220 -199 3 1380 276 30 0 0 chr4 104331035 104331068 -51299052 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1380 1415 222 75 28 chr4 104331068 104331259 -51298861 + MTD LTR MaLR 221 418 -1 3 1380 397 151 14 14 chr4 104331450 104331524 -51298596 + MTD LTR MaLR 47 120 -299 3 1380 234 234 61 61 chr4 104331841 104331955 -51298165 + Lx8 LINE L1 7359 7472 -1 3 1380 207 0 0 0 chr4 104332067 104332090 -51298030 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1380 717 306 39 0 chr4 104332142 104332400 -51297720 + B4A SINE B4 24 291 -1 3 1380 696 145 18 31 chr4 104332406 104332633 -51297487 + (CA)n Simple_repeat Simple_repeat 1 223 0 4 1380 424 138 62 0 chr4 104332653 104332783 -51297337 + (CA)n Simple_repeat Simple_repeat 1 138 0 4 1381 199 227 0 22 chr4 104334680 104334725 -51295395 - MIR SINE MIR -207 55 12 4 1381 261 307 18 98 chr4 104334739 104334851 -51295269 + MIRc SINE MIR 20 122 -146 4 1381 1228 48 7 0 chr4 104334986 104335133 -51294987 + B1_Mus1 SINE Alu 1 148 0 4 1381 659 65 11 0 chr4 104335171 104335264 -51294856 + (GAAAA)n Simple_repeat Simple_repeat 4 97 0 4 1381 196 363 88 12 chr4 104336426 104336596 -51293524 - MIRb SINE MIR -16 252 70 4 1381 1018 246 103 56 chr4 104336738 104337179 -51292941 - MER67A LTR ERV1 -26 635 16 4 1381 203 290 82 35 chr4 104339239 104339399 -51290721 + MIRc SINE MIR 25 193 -15 4 1381 688 347 108 13 chr4 104339952 104340349 -51289771 - MLT1C LTR MaLR -13 454 20 4 1381 1502 226 132 8 chr4 104341153 104341510 -51288610 + MTD LTR MaLR 5 405 -14 4 1381 285 338 43 61 chr4 104341520 104341684 -51288436 + MIRb SINE MIR 108 268 0 4 1381 324 0 0 0 chr4 104341750 104341786 -51288334 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1381 279 0 0 0 chr4 104341786 104341816 -51288304 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1381 325 212 10 18 chr4 104342366 104342444 -51287676 - L1MD3 LINE L1 -1269 6726 6614 4 1381 380 308 60 91 chr4 104342734 104342966 -51287154 - MLT1K LTR MaLR -5 590 366 4 1381 558 234 146 2 chr4 104343888 104344119 -51286001 + L1MB3 LINE L1 5901 6167 -16 4 1381 810 0 0 0 chr4 104344426 104344516 -51285604 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 1381 281 319 75 64 chr4 104345170 104345528 -51284592 - L1ME4a LINE L1 -205 5919 5558 4 1381 369 0 0 0 chr4 104345810 104345851 -51284269 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1381 201 39 0 0 chr4 104346349 104346375 -51283745 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1381 189 0 0 0 chr4 104347916 104347937 -51282183 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1381 574 170 47 0 chr4 104349935 104350041 -51280079 + L1_Mur3 LINE L1 3989 4099 -1781 4 1381 189 107 0 0 chr4 104354141 104354169 -51275951 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 4 1381 2089 152 55 60 chr4 104354517 104354921 -51275199 - ORR1B1 LTR MaLR 0 394 1 4 1381 229 250 13 77 chr4 104356344 104356422 -51273698 + MIR3 SINE MIR 111 183 -25 4 1381 249 108 0 0 chr4 104357373 104357410 -51272710 + (CAT)n Simple_repeat Simple_repeat 2 38 0 4 1381 312 307 116 60 chr4 104358000 104358215 -51271905 - MIRm SINE MIR 0 276 50 4 1381 192 259 169 24 chr4 104359495 104359578 -51270542 + MIRc SINE MIR 45 139 -129 4 1381 183 42 0 0 chr4 104360393 104360417 -51269703 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1381 207 0 0 0 chr4 104360521 104360544 -51269576 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1381 373 296 105 7 chr4 104360767 104360806 -51269314 + B4A SINE B4 38 90 -202 4 1381 704 205 0 0 chr4 104360806 104360933 -51269187 + B1_Mus1 SINE Alu 1 127 -21 4 1381 184 399 24 42 chr4 104362965 104363130 -51266990 + L2b LINE L2 3116 3277 -98 4 1381 206 205 51 0 chr4 104363199 104363238 -51266882 + MIRc SINE MIR 39 79 -189 4 1381 220 214 0 0 chr4 104363780 104363822 -51266298 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1381 404 312 158 71 chr4 104364831 104365197 -51264923 - MLT1H LTR MaLR -146 403 6 4 1381 320 372 21 37 chr4 104365614 104365801 -51264319 + MIR SINE MIR 14 197 -65 4 1381 402 21 0 0 chr4 104366379 104366426 -51263694 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1381 204 97 0 0 chr4 104366426 104366456 -51263664 + (CG)n Simple_repeat Simple_repeat 2 32 0 4 1381 222 160 0 0 chr4 104368126 104368176 -51261944 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1381 253 297 0 0 chr4 104369341 104369405 -51260715 - MIRc SINE MIR -166 102 39 4 1381 289 343 42 21 chr4 104369675 104369818 -51260302 - ID_B1 SINE B4 -74 150 5 4 1381 236 200 14 0 chr4 104370850 104370920 -51259200 + CT-rich Low_complexity Low_complexity 2 72 0 4 1381 599 176 20 0 chr4 104370924 104371026 -51259094 - B1_Mur3 SINE Alu -7 142 39 4 1381 249 188 0 77 chr4 104371026 104371130 -51258990 + C-rich Low_complexity Low_complexity 1 96 0 4 1381 274 203 0 17 chr4 104371131 104371191 -51258929 - B1_Mur4 SINE Alu -91 59 1 4 1381 617 326 75 18 chr4 104373488 104373716 -51256404 + MIR SINE MIR 22 262 0 4 1381 317 276 0 39 chr4 104373919 104374021 -51256099 - MLT1B LTR MaLR -12 378 281 4 1381 1145 273 45 43 chr4 104374189 104374541 -51255579 - ORR1D2 LTR MaLR -3 367 15 4 1381 485 262 29 51 chr4 104374776 104374913 -51255207 - MER94 DNA AcHobo 0 134 1 4 1381 428 219 84 19 chr4 104376162 104376269 -51253851 + MIR SINE MIR 120 233 -29 4 1381 342 0 0 0 chr4 104376413 104376451 -51253669 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1381 222 37 0 0 chr4 104376771 104376798 -51253322 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1381 242 328 83 55 chr4 104376964 104377109 -51253011 - L2b LINE L2 -1 3374 3226 4 1381 229 369 97 0 chr4 104377833 104377936 -51252184 - PB1D10 SINE Alu -4 113 1 4 1381 2059 152 144 8 chr4 104378088 104378457 -51251663 + MTC LTR MaLR 1 419 0 4 1381 469 158 0 19 chr4 104380425 104380528 -51249592 + CT-rich Low_complexity Low_complexity 2 102 0 4 1381 346 255 119 14 chr4 104380599 104380742 -51249378 + RMER10A LTR ERVL 260 417 -25 4 1381 338 250 0 118 chr4 104381619 104381746 -51248374 + PB1D7 SINE Alu 1 112 -8 4 1381 282 210 0 120 chr4 104383148 104383240 -51246880 + L2c LINE L2 3298 3378 -9 4 1381 244 257 58 97 chr4 104383355 104383510 -51246610 + MER5B DNA MER1_type 19 167 -11 4 1381 243 73 70 42 chr4 104386605 104386676 -51243444 + (GTGTG)n Simple_repeat Simple_repeat 4 76 0 4 1381 821 136 11 11 chr4 104386677 104386856 -51243264 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1381 340 221 105 49 chr4 104387864 104388007 -51242113 + MIRc SINE MIR 103 253 -15 4 1381 279 0 0 0 chr4 104389524 104389555 -51240565 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1381 297 0 0 0 chr4 104389555 104389587 -51240533 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1381 295 206 0 16 chr4 104392036 104392100 -51238020 - MIR SINE MIR -59 149 87 4 1381 204 222 22 0 chr4 104392901 104392946 -51237174 - MIRb SINE MIR -50 218 173 4 1381 229 296 101 10 chr4 104394353 104394452 -51235668 + MT2B LTR ERVL 134 241 -360 4 1381 506 122 0 0 chr4 104394391 104394465 -51235655 + 4.5SRNA scRNA scRNA 21 94 0 4 1381 999 90 0 77 chr4 104394465 104394621 -51235499 + B1_Mus1 SINE Alu 5 148 0 4 1381 497 165 10 0 chr4 104394621 104394718 -51235402 + GA-rich Low_complexity Low_complexity 1 98 0 4 1381 269 345 35 9 chr4 104394891 104395005 -51235115 - L2b LINE L2 -6 3369 3253 4 1381 221 280 99 64 chr4 104395721 104395918 -51234202 + MIRc SINE MIR 61 268 0 4 1381 232 231 118 30 chr4 104396078 104396186 -51233934 + MIR3 SINE MIR 65 185 -83 4 1381 210 314 129 1 chr4 104396408 104396497 -51233623 + L2a LINE L2 3277 3426 0 4 1381 414 39 0 0 chr4 104396668 104396720 -51233400 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1381 791 271 82 95 chr4 104397428 104397828 -51232292 + Tigger5 DNA MER2_type 13 407 -1999 4 1381 702 309 99 23 chr4 104397901 104398245 -51231875 - MER20B DNA MER1_type -96 687 318 4 1381 237 311 44 62 chr4 104398385 104398498 -51231622 - MER20B DNA MER1_type -671 112 2 4 1381 203 320 80 0 chr4 104399264 104399339 -51230781 + MIRc SINE MIR 29 109 -159 4 1381 363 327 87 33 chr4 104399603 104399856 -51230264 - MIR SINE MIR -3 259 3 4 1381 251 236 55 14 chr4 104401156 104401229 -51228891 + B4A SINE B4 2 77 -215 4 1381 333 47 0 0 chr4 104401429 104401472 -51228648 + (CATA)n Simple_repeat Simple_repeat 3 45 0 4 1381 189 0 0 0 chr4 104401754 104401775 -51228345 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1381 411 257 18 62 chr4 104402663 104402775 -51227345 - MER20 DNA MER1_type -96 123 17 4 1381 188 67 0 32 chr4 104403157 104403188 -51226932 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 4 1381 184 321 0 0 chr4 104404017 104404070 -51226050 - MER5A DNA MER1_type -78 111 59 4 1381 378 0 0 0 chr4 104405298 104405340 -51224780 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1381 486 125 0 0 chr4 104405341 104405421 -51224699 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1381 245 351 0 0 chr4 104405435 104405566 -51224554 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 1381 183 342 75 50 chr4 104406796 104406916 -51223204 + MIRb SINE MIR 29 151 -117 4 1381 420 333 76 23 chr4 104407027 104407199 -51222921 + MIRb SINE MIR 57 237 -31 4 1381 321 305 53 60 chr4 104407274 104407424 -51222696 + HAL1-2a_MD LINE L1 2377 2525 -499 4 1381 378 0 0 0 chr4 104407781 104407823 -51222297 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1381 729 88 0 0 chr4 104408511 104408613 -51221507 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 4 1381 782 296 31 22 chr4 104409264 104409489 -51220631 + B4A SINE B4 64 290 -2 4 1381 258 300 12 24 chr4 104409598 104409680 -51220440 - B1F1 SINE Alu -57 92 12 4 1381 226 327 42 42 chr4 104410170 104410336 -51219784 - L2 LINE L2 -926 2493 2328 4 1381 183 42 0 0 chr4 104410658 104410682 -51219438 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1381 257 235 20 0 chr4 104411100 104411151 -51218969 - Charlie19a DNA Charlie -291 95 44 4 1381 219 245 0 19 chr4 104411174 104411228 -51218892 + MIR3 SINE MIR 151 203 -5 4 1381 2125 267 8 28 chr4 104412557 104413163 -51216957 - Lx8 LINE L1 0 7473 6880 5 1381 308 64 21 0 chr4 104413279 104413326 -51216794 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1381 216 0 0 0 chr4 104413323 104413347 -51216773 + (TCC)n Simple_repeat Simple_repeat 2 25 0 5 1381 352 353 44 7 chr4 104413367 104413504 -51216616 - MIRb SINE MIR -36 232 91 5 1381 1201 245 50 7 chr4 104413592 104413872 -51216248 + B4 SINE B4 1 292 0 5 1381 200 59 0 29 chr4 104414340 104414375 -51215745 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 5 1381 273 75 0 0 chr4 104416811 104416851 -51213269 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1381 459 52 0 0 chr4 104417908 104417966 -51212154 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 5 1381 852 159 52 0 chr4 104420023 104420216 -51209904 - URR1B DNA MER1_type 0 225 7 5 1381 200 259 78 100 chr4 104420582 104420672 -51209448 + MIRc SINE MIR 31 118 -150 5 1381 193 368 24 64 chr4 104420981 104421106 -51209014 - MIRm SINE MIR 0 276 157 5 1381 213 272 171 12 chr4 104421513 104421595 -51208525 + PB1D10 SINE Alu 1 95 -22 5 1381 211 308 154 27 chr4 104421517 104421627 -51208493 + ID_B1 SINE B4 86 209 -15 5 1381 274 197 0 132 chr4 104421651 104421727 -51208393 + ID4_ SINE ID 2 67 -16 5 1381 1549 192 206 3 chr4 104421783 104422133 -51207987 - MTC LTR MaLR 0 421 1 5 1381 489 123 0 0 chr4 104422249 104422322 -51207798 + PB1D9 SINE Alu 48 120 0 5 1381 496 310 51 0 chr4 104422638 104422796 -51207324 - RCHARR1 DNA MER1_type -653 321 156 5 1381 308 125 0 59 chr4 104424764 104424815 -51205305 - HAL1-3A_ME LINE L1 -836 2022 1975 5 1381 261 323 123 21 chr4 104424873 104425048 -51205072 - MIRb SINE MIR -56 206 8 5 1381 729 63 0 0 chr4 104425516 104425611 -51204509 + (TC)n Simple_repeat Simple_repeat 2 96 0 5 1381 564 15 0 0 chr4 104425611 104425675 -51204445 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1381 26 0 0 0 chr4 104427555 104427581 -51202539 + AT_rich Low_complexity Low_complexity 1 26 0 5 1381 210 239 155 63 chr4 104427774 104427930 -51202190 + MIR SINE MIR 53 220 -42 5 1381 247 253 45 57 chr4 104427913 104428001 -51202119 + MIR SINE MIR 137 223 -39 5 1381 288 296 131 9 chr4 104428936 104429096 -51201024 - MIR SINE MIR -61 207 28 5 1381 572 269 45 0 chr4 104429137 104429271 -51200849 + B1F1 SINE Alu 3 142 -7 5 1381 856 137 0 13 chr4 104429271 104429426 -51200694 + GA-rich Low_complexity Low_complexity 1 153 0 5 1381 186 315 100 11 chr4 104429921 104430011 -51200109 - MIRc SINE MIR -123 145 48 5 1381 313 329 62 115 chr4 104430045 104430464 -51199656 + MLT1H LTR MaLR 129 525 -24 5 1381 537 16 0 0 chr4 104431193 104431255 -51198865 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1381 277 349 0 35 chr4 104431269 104431355 -51198765 - RSINE1 SINE B4 -40 125 43 5 1381 440 354 85 5 chr4 104431826 104432050 -51198070 - MLT1J1 LTR MaLR -2 442 201 5 1381 492 273 21 7 chr4 104432094 104432234 -51197886 - Lx8 LINE L1 -881 6592 6451 5 1381 585 266 114 85 chr4 104432260 104432452 -51197668 + Lx8 LINE L1 7148 7341 -132 5 1381 1216 28 31 0 chr4 104432452 104432773 -51197347 + (TAGA)n Simple_repeat Simple_repeat 1 331 0 5 1381 585 266 114 85 chr4 104432773 104432895 -51197225 + Lx8 LINE L1 7342 7471 -2 5 1381 690 179 26 0 chr4 104432910 104433027 -51197093 - MTC LTR MaLR -301 120 1 5 1381 1365 178 17 4 chr4 104433042 104433274 -51196846 + MTC LTR MaLR 134 368 -53 5 1381 348 24 0 0 chr4 104433274 104433315 -51196805 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1381 288 0 0 0 chr4 104433798 104433830 -51196290 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1381 192 329 38 0 chr4 104434594 104434673 -51195447 - MIRc SINE MIR -111 157 76 5 1381 284 199 200 34 chr4 104434905 104435112 -51195008 + MTD LTR MaLR 104 421 0 5 1381 1007 71 7 0 chr4 104436038 104436179 -51193941 + (TC)n Simple_repeat Simple_repeat 1 142 0 5 1381 955 206 105 180 chr4 104436179 104436552 -51193568 + MTD LTR MaLR 68 412 -7 5 1381 186 133 0 0 chr4 104437403 104437433 -51192687 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 5 1381 313 355 0 43 chr4 104437441 104437556 -51192564 - B4A SINE B4 0 292 183 5 1381 259 257 52 39 chr4 104437603 104437680 -51192440 - B4A SINE B4 -207 85 8 5 1381 231 247 67 114 chr4 104440282 104440387 -51189733 - L2b LINE L2 -269 3106 3007 5 1381 819 31 0 0 chr4 104440443 104440541 -51189579 + (GGA)n Simple_repeat Simple_repeat 3 100 0 5 1381 198 0 0 0 chr4 104441134 104441156 -51188964 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1381 180 310 41 27 chr4 104442976 104443049 -51187071 - L3 LINE CR1 -1318 3171 3098 5 1381 209 357 59 52 chr4 104443334 104443470 -51186650 + MIRb SINE MIR 7 143 -125 5 1381 182 325 48 12 chr4 104443671 104443755 -51186365 - MIR3 SINE MIR -29 179 93 5 1381 977 254 75 50 chr4 104444007 104444368 -51185752 + ORR1D2 LTR MaLR 1 370 0 5 1381 198 0 0 0 chr4 104444516 104444538 -51185582 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1381 248 224 0 0 chr4 104444539 104444588 -51185532 + MTD LTR MaLR 371 419 0 5 1381 378 0 0 0 chr4 104444863 104444905 -51185215 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1381 387 0 0 0 chr4 104444905 104444947 -51185173 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1381 552 30 0 0 chr4 104444947 104445012 -51185108 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 5 1381 25 0 0 0 chr4 104445096 104445121 -51184999 + AT_rich Low_complexity Low_complexity 1 25 0 5 1381 2167 157 36 39 chr4 104445121 104445533 -51184587 - Lx3C LINE L1 -9 6967 6557 5 1381 541 127 0 44 chr4 104445717 104445808 -51184312 - Lx3C LINE L1 -388 6588 6502 5 1381 281 223 3 59 chr4 104445810 104445902 -51184218 - L1_Mur1 LINE L1 -6152 830 672 5 1381 324 164 14 29 chr4 104446431 104446500 -51183620 - MIR3 SINE MIR -45 163 96 5 1381 199 280 0 0 chr4 104446709 104446759 -51183361 + L2a LINE L2 3376 3425 -1 5 1381 193 346 39 0 chr4 104447426 104447556 -51182564 + L2c LINE L2 3032 3166 -221 5 1381 228 216 0 0 chr4 104447998 104448049 -51182071 + GA-rich Low_complexity Low_complexity 1 51 0 5 1381 1164 111 0 0 chr4 104448050 104448230 -51181890 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1381 315 0 0 0 chr4 104448621 104448656 -51181464 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1381 1054 96 0 0 chr4 104448667 104448813 -51181307 - B1_Mus1 SINE Alu -1 147 2 5 1381 1196 254 149 32 chr4 104448834 104449463 -51180657 - L1MA5 LINE L1 -7 6293 5591 5 1381 867 82 0 0 chr4 104449483 104449617 -51180503 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 5 1381 775 281 94 30 chr4 104449697 104450060 -51180060 - L1MA5 LINE L1 -774 5369 4984 5 1381 212 143 24 0 chr4 104450060 104450102 -51180018 + CT-rich Low_complexity Low_complexity 2 44 0 5 1381 757 181 0 16 chr4 104450129 104450258 -51179862 - B1_Mus2 SINE Alu -19 128 2 5 1381 513 0 0 0 chr4 104450342 104450399 -51179721 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1381 275 0 29 0 chr4 104450399 104450433 -51179687 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1381 887 285 42 53 chr4 104450445 104450730 -51179390 - B4 SINE B4 -4 288 7 5 1381 2021 282 126 14 chr4 104450743 104451031 -51179089 - L1MA5 LINE L1 -1223 4920 4627 5 1381 378 61 0 0 chr4 104451031 104451080 -51179040 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1381 2021 282 126 14 chr4 104451080 104451664 -51178456 - L1MA5 LINE L1 -1517 4626 3950 5 1381 307 324 138 14 chr4 104452625 104452763 -51177357 - MIRb SINE MIR -103 165 11 5 1381 296 265 67 47 chr4 104453467 104453603 -51176517 - MIR SINE MIR -78 184 55 5 1381 1235 231 114 15 chr4 104453782 104454116 -51176004 - ORR1D1 LTR MaLR 0 374 8 5 1381 230 152 43 0 chr4 104455182 104455228 -51174892 - MIRm SINE MIR -123 153 106 5 1381 187 348 22 10 chr4 104456397 104456506 -51173614 - MIRb SINE MIR -117 151 34 5 1381 987 213 63 24 chr4 104456625 104456832 -51173288 + B3 SINE B2 1 215 -1 5 1381 746 251 40 11 chr4 104457690 104457867 -51172253 + B3A SINE B2 1 182 -16 5 1381 330 87 0 0 chr4 104457879 104457925 -51172195 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1381 202 266 31 15 chr4 104458461 104458526 -51171594 - MIR SINE MIR -79 183 118 5 1381 213 270 118 103 chr4 104459218 104459354 -51170766 + L2b LINE L2 3238 3381 -6 5 1381 248 206 152 29 chr4 104459649 104459754 -51170366 - Lx8 LINE L1 -3 7470 7353 5 1381 207 0 0 0 chr4 104459924 104459947 -51170173 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1381 207 317 106 0 chr4 104460586 104460709 -51169411 + L2c LINE L2 3227 3362 -25 5 1381 434 274 35 6 chr4 104460946 104461115 -51169005 - L1MA5 LINE L1 -21 6279 6106 5 1381 448 285 115 43 chr4 104462461 104462670 -51167450 - MER58A DNA MER1_type 0 224 1 5 1381 315 137 0 38 chr4 104464063 104464116 -51166004 + MTC LTR MaLR 369 419 -2 5 1382 245 269 37 0 chr4 104465408 104465454 -51164666 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 5 1382 225 65 0 0 chr4 104465454 104465485 -51164635 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 5 1382 245 269 37 0 chr4 104465485 104465546 -51164574 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 5 1382 501 287 139 0 chr4 104467827 104468064 -51162056 + L1M6 LINE L1 1026 1295 -5201 5 1382 428 292 61 17 chr4 104468469 104468650 -51161470 + MER53 DNA hAT 5 193 0 5 1382 310 305 109 40 chr4 104468785 104468959 -51161161 - MLT1I LTR MaLR -6 405 220 5 1382 901 283 21 25 chr4 104469390 104469669 -51160451 + B4 SINE B4 2 279 -13 5 1382 324 0 0 0 chr4 104469677 104469713 -51160407 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1382 182 37 37 0 chr4 104469779 104469806 -51160314 + (ATG)n Simple_repeat Simple_repeat 2 29 0 6 1382 326 311 72 53 chr4 104469924 104470131 -51159989 + L1M6 LINE L1 5674 5884 -494 5 1382 243 287 78 78 chr4 104470472 104470574 -51159546 + MIRb SINE MIR 95 196 -72 6 1382 228 301 24 0 chr4 104470807 104470890 -51159230 + GA-rich Low_complexity Low_complexity 5 89 0 6 1382 234 259 38 156 chr4 104471138 104471298 -51158822 - Charlie24 DNA MER1_type -1291 1159 1019 6 1382 394 280 47 0 chr4 104472351 104472458 -51157662 - Tigger5 DNA MER2_type -4 2402 2291 6 1382 303 320 74 13 chr4 104473496 104473645 -51156475 + L3 LINE CR1 4237 4394 -95 6 1382 2443 95 11 3 chr4 104474210 104474557 -51155563 - RLTR9A LTR ERVK -18 350 1 6 1382 198 0 0 0 chr4 104474580 104474602 -51155518 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1382 267 93 0 0 chr4 104474806 104474849 -51155271 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 1382 188 349 167 44 chr4 104475083 104475263 -51154857 + MIRb SINE MIR 59 260 -8 6 1382 306 323 0 0 chr4 104475286 104475379 -51154741 - MIR SINE MIR -52 210 118 6 1382 323 315 18 0 chr4 104475818 104475929 -51154191 + (TCCA)n Simple_repeat Simple_repeat 3 115 0 6 1382 347 277 7 0 chr4 104475940 104476088 -51154032 + (TCCA)n Simple_repeat Simple_repeat 3 151 0 6 1382 195 329 36 12 chr4 104477200 104477283 -51152837 - MIRb SINE MIR -125 143 59 6 1382 197 303 40 0 chr4 104479106 104479182 -51150938 - MIRc SINE MIR 0 268 190 6 1382 855 95 31 16 chr4 104479358 104479486 -51150634 + B1_Mur4 SINE Alu 1 130 -20 6 1382 354 43 0 0 chr4 104479528 104479558 -51150562 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1382 1566 62 0 0 chr4 104479558 104479750 -51150370 + B2_Mm1a SINE B2 2 193 0 6 1382 354 43 0 0 chr4 104479750 104479765 -51150355 + (A)n Simple_repeat Simple_repeat 1 15 0 6 1382 387 60 0 0 chr4 104480881 104480931 -51149189 + (TCC)n Simple_repeat Simple_repeat 1 50 0 6 1382 377 302 60 0 chr4 104480940 104481056 -51149064 - ID_B1 SINE B4 -11 213 91 6 1382 617 299 95 78 chr4 104481108 104481391 -51148729 - B4A SINE B4 -4 288 1 6 1382 337 311 104 12 chr4 104482049 104482212 -51147908 - MIRc SINE MIR -4 264 87 6 1382 3600 177 98 113 chr4 104482212 104483127 -51146993 + RMER19B LTR ERVK 1 902 0 6 1382 194 128 0 25 chr4 104485267 104485307 -51144813 + T-rich Low_complexity Low_complexity 2 40 0 6 1382 717 276 18 34 chr4 104485642 104485856 -51144264 - B3A SINE B2 0 216 7 6 1382 244 313 0 0 chr4 104486036 104486119 -51144001 - L1M2 LINE L1 -519 5778 5696 6 1382 237 319 0 0 chr4 104486129 104486201 -51143919 + MLT1D LTR MaLR 384 455 -50 6 1382 376 303 131 36 chr4 104486266 104486329 -51143791 - ID_B1 SINE B4 -72 152 75 6 1382 1630 134 131 120 chr4 104486329 104486703 -51143417 + ORR1C1 LTR MaLR 1 378 0 6 1382 376 303 131 36 chr4 104486703 104486776 -51143344 - ID SINE ID -150 74 3 6 1382 1023 147 147 0 chr4 104487330 104487527 -51142593 - URR1A DNA MER1_type 0 226 1 6 1382 558 253 11 54 chr4 104487911 104488095 -51142025 - MER5B DNA MER1_type -2 176 1 6 1382 1942 217 29 46 chr4 104488783 104489198 -51140922 + MTD LTR MaLR 9 416 -3 6 1382 907 276 121 33 chr4 104489544 104489874 -51140246 + MLT1A0 LTR MaLR 7 365 0 6 1382 201 154 0 0 chr4 104490451 104490490 -51139630 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1382 230 295 64 0 chr4 104490935 104491013 -51139107 - Charlie15a DNA MER1_type -35 189 107 6 1382 223 211 118 32 chr4 104491040 104491133 -51138987 + MIR3 SINE MIR 94 194 -14 6 1382 481 330 35 20 chr4 104491783 104491981 -51138139 + MIR SINE MIR 7 207 -55 6 1382 225 169 28 176 chr4 104492093 104492201 -51137919 + LTR90A LTR LTR 40 131 -845 6 1382 280 296 27 36 chr4 104493534 104493646 -51136474 + PB1D10 SINE Alu 2 112 -5 6 1382 228 163 0 0 chr4 104493712 104493755 -51136365 + GA-rich Low_complexity Low_complexity 3 45 0 6 1382 273 342 45 50 chr4 104494061 104494261 -51135859 + MLT1B LTR MaLR 49 247 -143 6 1382 288 308 184 16 chr4 104495345 104495530 -51134590 - MER20 DNA MER1_type 0 219 4 6 1382 873 263 95 4 chr4 104495894 104496146 -51133974 + B4A SINE B4 4 278 -14 6 1382 423 0 0 0 chr4 104496164 104496211 -51133909 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1382 202 254 115 35 chr4 104496333 104496431 -51133689 - MIR SINE MIR -61 147 43 6 1382 492 18 0 0 chr4 104497057 104497114 -51133006 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1382 294 50 0 0 chr4 104497557 104497597 -51132523 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1382 302 317 42 38 chr4 104498119 104498249 -51131871 + MIRm SINE MIR 13 143 -133 6 1382 302 235 96 0 chr4 104498271 104498423 -51131697 + Lx7 LINE L1 5734 5909 -1149 6 1382 468 0 0 0 chr4 104498423 104498475 -51131645 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1382 216 246 0 0 chr4 104499726 104499795 -51130325 + CT-rich Low_complexity Low_complexity 2 70 0 6 1382 237 159 0 0 chr4 104500112 104500156 -51129964 + (TGAG)n Simple_repeat Simple_repeat 4 47 0 1 1382 28 29 0 0 chr4 104501551 104501586 -51128534 + AT_rich Low_complexity Low_complexity 1 35 0 2 1382 279 306 53 23 chr4 104501874 104502062 -51128058 - MIR3 SINE MIR 0 208 23 3 1382 477 0 0 0 chr4 104502233 104502286 -51127834 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1382 396 0 0 0 chr4 104502286 104502329 -51127791 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1382 312 27 0 0 chr4 104503097 104503134 -51126986 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 6 1382 892 260 102 32 chr4 104503461 104503803 -51126317 + L1MB1 LINE L1 5802 6167 -1 7 1382 351 0 0 0 chr4 104503813 104503852 -51126268 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1382 486 49 0 0 chr4 104503852 104503912 -51126208 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1382 197 0 71 0 chr4 104504063 104504091 -51126029 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 1 1382 227 200 20 0 chr4 104504097 104504147 -51125973 + MTD LTR MaLR 12 62 -359 1 1382 764 199 0 0 chr4 104504192 104504333 -51125787 - B1_Mur2 SINE Alu -7 142 2 1 1382 844 290 114 12 chr4 104504336 104504661 -51125459 + MTD LTR MaLR 48 405 -14 1 1382 235 372 49 16 chr4 104504924 104505107 -51125013 + L3 LINE CR1 4213 4401 -88 1 1382 280 288 59 0 chr4 104506661 104506768 -51123352 + MIR SINE MIR 37 150 -112 1 1382 240 329 93 7 chr4 104507190 104507340 -51122780 + MIR SINE MIR 19 181 -81 1 1382 284 248 87 149 chr4 104508991 104509152 -51120968 + MLT2B1 LTR ERVL 417 567 0 1 1382 363 276 126 43 chr4 104509251 104509482 -51120638 - MER112 DNA MER1_type -7 254 5 1 1382 217 299 72 32 chr4 104509900 104510042 -51120078 + MIR SINE MIR 100 263 -5 1 1382 251 216 0 0 chr4 104510820 104510871 -51119249 - MIR SINE MIR -89 173 123 1 1382 745 182 217 43 chr4 104511347 104511531 -51118589 + B3 SINE B2 1 216 0 2 1382 260 343 43 7 chr4 104511538 104511679 -51118441 - MIR SINE MIR -86 176 31 2 1382 210 340 74 37 chr4 104511754 104511916 -51118204 - MIRb SINE MIR -42 226 59 2 1382 224 278 28 0 chr4 104513062 104513134 -51116986 + L2b LINE L2 2722 2795 -624 2 1382 641 276 34 6 chr4 104513296 104513471 -51116649 - B3A SINE B2 -18 180 1 2 1382 182 353 66 44 chr4 104513489 104513717 -51116403 + L2b LINE L2 2942 3174 -201 2 1382 739 139 12 0 chr4 104513956 104514122 -51115998 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 2 1382 200 353 97 0 chr4 104514127 104514278 -51115842 - L2a LINE L2 -8 3418 3203 2 1382 1074 243 178 6 chr4 104514278 104514626 -51115494 + MTD LTR MaLR 12 419 0 2 1382 219 154 0 0 chr4 104515195 104515234 -51114886 + A-rich Low_complexity Low_complexity 1 39 0 2 1382 432 55 0 0 chr4 104515781 104515836 -51114284 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1382 193 330 38 28 chr4 104516361 104516467 -51113653 + MIRb SINE MIR 91 197 -71 3 1382 234 331 23 42 chr4 104516572 104516834 -51113286 - MER112 DNA MER1_type -4 257 1 3 1382 286 333 42 35 chr4 104517258 104517401 -51112719 - MER5A DNA MER1_type 0 189 46 3 1382 226 321 54 18 chr4 104517424 104517535 -51112585 - MER5A DNA MER1_type -74 115 1 3 1382 915 283 56 94 chr4 104518048 104518442 -51111678 + MTE2a LTR MaLR 1 379 0 3 1382 366 23 0 0 chr4 104518764 104518807 -51111313 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 3 1382 39312 7 0 1 chr4 104519236 104525188 -51104932 + L1Md_A LINE L1 1 5586 -297 3 1382 9113 7 0 0 chr4 104525188 104526184 -51103936 + L1Md_A LINE L1 5587 6582 0 3 1382 421 196 51 92 chr4 104528067 104528177 -51101943 - PB1D9 SINE Alu -12 108 1 3 1382 244 170 0 19 chr4 104528242 104528296 -51101824 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 3 1382 425 83 0 6 chr4 104528297 104528366 -51101754 - B2_Mm2 SINE B2 -103 113 47 3 1382 1065 76 140 0 chr4 104528394 104528551 -51101569 - B2_Mm2 SINE B2 -14 181 3 3 1382 1103 153 117 0 chr4 104529263 104529459 -51100661 - URR1A DNA MER1_type -3 223 5 4 1382 309 252 29 10 chr4 104529715 104529819 -51100301 + MIR SINE MIR 68 173 -89 4 1382 1616 178 87 9 chr4 104529884 104530229 -51099891 + ORR1D1 LTR MaLR 1 372 -2 4 1382 211 195 92 112 chr4 104530347 104530445 -51099675 + MIRc SINE MIR 2 97 -171 4 1382 1368 63 13 0 chr4 104530941 104531243 -51098877 + (GAAA)n Simple_repeat Simple_repeat 1 306 0 4 1382 570 67 0 0 chr4 104531243 104531318 -51098802 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 4 1382 574 270 40 0 chr4 104531846 104532020 -51098100 + MLT1B LTR MaLR 202 382 -8 4 1382 193 175 49 24 chr4 104532317 104532358 -51097762 - L2c LINE L2 -72 3315 3274 4 1382 1816 105 143 3 chr4 104532515 104532830 -51097290 + ORR1B2 LTR MaLR 1 359 -8 4 1382 251 318 172 80 chr4 104532952 104533290 -51096830 - MLT1A LTR MaLR -5 369 1 4 1382 21 36 0 0 chr4 104534767 104534795 -51095325 + AT_rich Low_complexity Low_complexity 1 28 0 5 1382 682 254 0 71 chr4 104534804 104534986 -51095134 + B3A SINE B2 5 173 -25 5 1382 225 282 109 69 chr4 104535403 104535605 -51094515 + L3 LINE CR1 4261 4470 -19 5 1382 185 273 0 0 chr4 104536718 104536762 -51093358 + MIR SINE MIR 217 260 -2 5 1382 291 298 126 32 chr4 104537436 104537682 -51092438 + MLT1C LTR MaLR 199 467 0 5 1382 216 217 33 0 chr4 104540049 104540141 -51089979 + GA-rich Low_complexity Low_complexity 2 96 0 5 1382 232 200 35 35 chr4 104540993 104541050 -51089070 - L1M5 LINE L1 -517 5607 5551 5 1382 629 189 12 92 chr4 104542240 104542403 -51087717 - B4A SINE B4 0 292 143 5 1382 1443 196 56 34 chr4 104543974 104544332 -51085788 - ORR1D1 LTR MaLR -8 366 1 5 1382 289 243 38 35 chr4 104545524 104545683 -51084437 + L1MEc LINE L1 2214 2372 -3947 5 1382 237 320 60 21 chr4 104545825 104546058 -51084062 + L1MEc LINE L1 2364 2605 -3714 5 1382 435 311 16 38 chr4 104546138 104546322 -51083798 + MTEb LTR MaLR 59 238 -141 6 1382 900 77 0 0 chr4 104546377 104546507 -51083613 + (TG)n Simple_repeat Simple_repeat 1 130 0 6 1382 207 0 0 0 chr4 104547013 104547036 -51083084 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1382 283 311 0 70 chr4 104547353 104547467 -51082653 - MIR SINE MIR -110 152 47 6 1382 1326 161 13 9 chr4 104547887 104548112 -51082008 - URR1A DNA MER1_type 0 226 1 6 1382 251 306 28 76 chr4 104549727 104549872 -51080248 - MIRb SINE MIR -45 223 86 6 1382 650 284 35 25 chr4 104550443 104550642 -51079478 + MER20 DNA MER1_type 7 207 -12 6 1382 437 239 143 34 chr4 104551475 104551622 -51078498 - RSINE1 SINE B4 0 165 3 6 1382 298 333 0 0 chr4 104552045 104552147 -51077973 + PB1D10 SINE Alu 10 111 -6 6 1382 246 32 0 0 chr4 104552270 104552301 -51077819 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1382 632 156 0 11 chr4 104553200 104553381 -51076739 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 7 1382 627 142 6 23 chr4 104553393 104553748 -51076372 + (TCTCTG)n Simple_repeat Simple_repeat 1 348 0 7 1382 441 0 0 0 chr4 104553745 104553794 -51076326 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1382 399 21 0 0 chr4 104555277 104555325 -51074795 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1382 182 351 132 0 chr4 104555784 104555898 -51074222 + MIRb SINE MIR 76 204 -64 7 1382 1253 236 126 24 chr4 104556059 104556426 -51073694 + MTD LTR MaLR 6 419 0 7 1382 539 285 4 49 chr4 104557121 104557328 -51072792 - MLT1H2 LTR MaLR -152 337 49 7 1382 837 183 176 11 chr4 104557335 104557517 -51072603 + B3 SINE B2 4 215 -1 7 1382 240 306 0 0 chr4 104557584 104557656 -51072464 + MIR SINE MIR 187 258 -4 7 1382 1327 91 0 41 chr4 104558051 104558245 -51071875 - B2_Mm2 SINE B2 -8 187 2 7 1382 219 350 100 19 chr4 104559889 104560049 -51070071 - MIRb SINE MIR -36 232 60 7 1382 590 301 35 35 chr4 104560207 104560434 -51069686 + MLT1G1-int LTR MaLR 1181 1407 -2 7 1382 455 322 28 7 chr4 104560660 104560804 -51069316 + MLT1G1 LTR MaLR 425 571 -8 7 1382 412 343 15 0 chr4 104561264 104561401 -51068719 + MIRb SINE MIR 114 252 -16 8 1382 387 0 0 0 chr4 104561475 104561518 -51068602 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1382 219 69 0 0 chr4 104561810 104561839 -51068281 + (CCCCAG)n Simple_repeat Simple_repeat 4 32 0 8 1382 273 75 0 0 chr4 104561920 104561960 -51068160 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 8 1382 1249 78 17 6 chr4 104564221 104564402 -51065718 + L1_Mus3 LINE L1 6452 6634 -4 8 1382 408 310 99 39 chr4 104565087 104565268 -51064852 - MLT1A0 LTR MaLR -4 361 170 8 1382 894 140 0 0 chr4 104565814 104565993 -51064127 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1382 244 336 82 38 chr4 104567278 104567436 -51062684 + MLT1J2 LTR MaLR 64 228 -220 8 1382 6745 205 52 27 chr4 104567491 104569056 -51061064 - Lx9 LINE L1 0 7644 5934 8 1382 1470 153 218 22 chr4 104569774 104569954 -51060166 - ORR1C2 LTR MaLR 0 384 156 8 1382 305 0 50 0 chr4 104569954 104569994 -51060126 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 9 1382 1470 153 218 22 chr4 104569994 104570134 -51059986 - ORR1C2 LTR MaLR -229 155 2 8 1382 201 167 0 0 chr4 104570916 104570952 -51059168 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1382 468 0 0 0 chr4 104571199 104571251 -51058869 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1382 337 378 53 43 chr4 104571285 104571532 -51058588 + LTR33A_ LTR ERVL 36 268 -263 9 1382 1428 142 0 42 chr4 104572797 104573033 -51057087 - URR1A DNA MER1_type 0 226 1 9 1382 192 242 0 0 chr4 104573077 104573110 -51057010 + L2a LINE L2 3280 3312 -75 9 1382 229 330 47 9 chr4 104573262 104573369 -51056751 - L2 LINE L2 -928 2491 2381 9 1382 202 336 103 0 chr4 104573594 104573701 -51056419 + L2a LINE L2 3307 3424 -2 9 1382 243 239 53 53 chr4 104573890 104573965 -51056155 + MIRb SINE MIR 130 204 -64 9 1382 3025 85 2 2 chr4 104574109 104574509 -51055611 + MTB LTR MaLR 1 400 0 9 1382 308 296 205 17 chr4 104575788 104575968 -51054152 + MIRb SINE MIR 9 224 -44 9 1382 251 254 0 60 chr4 104575991 104576058 -51054062 - MER66A LTR ERV1 -409 69 7 1 1382 315 316 0 0 chr4 104576163 104576258 -51053862 - MLT1I LTR MaLR -1 410 316 1 1382 714 262 201 20 chr4 104577191 104577534 -51052586 + MLT1A1 LTR MaLR 4 408 0 1 1382 862 258 29 0 chr4 104578006 104578215 -51051905 + B3 SINE B2 2 216 0 1 1382 1289 99 39 0 chr4 104578219 104578401 -51051719 - B2_Mm2 SINE B2 -5 190 2 1 1382 22 56 0 0 chr4 104578731 104578767 -51051353 + AT_rich Low_complexity Low_complexity 1 36 0 1 1382 358 151 40 27 chr4 104578777 104578852 -51051268 - MTC LTR MaLR 0 421 346 1 1382 217 335 0 0 chr4 104578885 104579058 -51051062 + G-rich Low_complexity Low_complexity 1 173 0 1 1382 1527 159 158 7 chr4 104579103 104579413 -51050707 - MTC LTR MaLR -52 369 13 1 1382 1108 305 126 11 chr4 104579420 104579897 -51050223 - Lx8 LINE L1 -153 7320 6789 1 1382 202 182 0 0 chr4 104580199 104580232 -51049888 + (CCTG)n Simple_repeat Simple_repeat 4 36 0 1 1382 705 278 53 22 chr4 104580370 104580598 -51049522 + B4A SINE B4 44 278 -14 1 1382 324 0 0 0 chr4 104580601 104580637 -51049483 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1382 186 43 0 0 chr4 104581068 104581091 -51049029 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1382 629 312 33 37 chr4 104581271 104581514 -51048606 - RMER15 LTR ERVL -15 560 319 1 1382 1035 108 0 7 chr4 104581535 104581675 -51048445 + B1_Mus1 SINE Alu 1 140 -8 1 1382 297 0 0 0 chr4 104581675 104581708 -51048412 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1382 205 86 0 28 chr4 104581717 104581753 -51048367 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1382 2035 168 35 9 chr4 104582026 104582374 -51047746 + ORR1B2 LTR MaLR 1 357 -10 1 1382 463 294 29 0 chr4 104582587 104582723 -51047397 + MIR SINE MIR 15 154 -108 1 1382 740 223 89 11 chr4 104583670 104583785 -51046335 + B3 SINE B2 2 124 -92 1 1382 234 0 0 0 chr4 104583785 104583811 -51046309 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1382 740 223 89 11 chr4 104583811 104583885 -51046235 + B3 SINE B2 125 205 -11 1 1382 25 31 0 0 chr4 104583886 104583918 -51046202 + AT_rich Low_complexity Low_complexity 1 32 0 1 1382 505 265 106 15 chr4 104583964 104584284 -51045836 + Lx7 LINE L1 5615 5995 -1649 1 1382 745 181 0 16 chr4 104585067 104585196 -51044924 + B1_Mur3 SINE Alu 1 127 -22 1 1382 185 65 32 0 chr4 104585275 104585306 -51044814 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1382 189 0 0 0 chr4 104585412 104585433 -51044687 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1382 257 277 0 0 chr4 104587334 104587381 -51042739 - B1F1 SINE Alu -97 52 6 1 1382 180 0 0 0 chr4 104587463 104587483 -51042637 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1382 41 0 0 0 chr4 104587937 104587978 -51042142 + AT_rich Low_complexity Low_complexity 1 41 0 1 1382 373 292 34 0 chr4 104588056 104588145 -51041975 + PB1D10 SINE Alu 1 92 -25 1 1382 331 328 70 0 chr4 104588725 104588853 -51041267 + Tigger5 DNA MER2_type 6 142 -2264 1 1382 435 276 0 41 chr4 104588884 104589005 -51041115 + Tigger5 DNA MER2_type 2291 2406 0 1 1382 369 0 0 0 chr4 104589122 104589163 -51040957 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1382 207 243 246 14 chr4 104589181 104589319 -51040801 - L2 LINE L2 -929 2490 2321 1 1382 643 357 111 26 chr4 104589358 104589827 -51040293 + MLT1H1 LTR MaLR 10 518 -37 1 1382 312 277 9 106 chr4 104589901 104589917 -51040203 + MT2B LTR ERVL 154 158 -443 1 1382 540 276 0 0 chr4 104589917 104590015 -51040105 + PB1D10 SINE Alu 3 100 -17 1 1382 624 224 28 0 chr4 104590015 104590158 -51039962 + B1_Mur1 SINE Alu 1 147 -2 1 1382 1159 262 14 14 chr4 104590218 104590497 -51039623 + B4A SINE B4 10 288 -4 1 1382 405 0 0 0 chr4 104590534 104590579 -51039541 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1382 187 333 54 27 chr4 104590835 104590909 -51039211 - MIR3 SINE MIR -17 191 116 1 1382 472 202 11 0 chr4 104591847 104591936 -51038184 + PB1D7 SINE Alu 11 100 -20 1 1382 243 0 0 0 chr4 104591936 104591963 -51038157 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1382 520 308 43 11 chr4 104592602 104592786 -51037334 + MIR SINE MIR 31 220 -42 1 1382 709 327 49 80 chr4 104592861 104593247 -51036873 + MLT1B LTR MaLR 9 382 -8 1 1382 270 0 0 0 chr4 104593309 104593339 -51036781 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1382 575 242 16 39 chr4 104593757 104593886 -51036234 - RSINE1 SINE B4 -11 154 29 1 1382 877 112 222 12 chr4 104593882 104594053 -51036067 - URR1B DNA MER1_type -13 212 6 1 1382 224 355 24 24 chr4 104594163 104594287 -51035833 + MIRc SINE MIR 41 164 -104 1 1382 195 129 0 0 chr4 104594826 104594857 -51035263 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 1 1382 501 226 21 55 chr4 104594857 104595002 -51035118 - B1F1 SINE Alu 0 149 10 1 1383 217 343 74 40 chr4 104595783 104595932 -51034188 - MIRb SINE MIR -87 181 28 1 1383 282 209 164 0 chr4 104596044 104596111 -51034009 + MT2A LTR ERVL 1 78 -455 1 1383 258 352 0 11 chr4 104596111 104596133 -51033987 + MTEa LTR MaLR 1 88 -291 1 1383 293 173 0 0 chr4 104596122 104596174 -51033946 + MT2A LTR ERVL 482 533 0 1 1383 1742 107 45 64 chr4 104596418 104596729 -51033391 + Lx LINE L1 6345 6649 -5 1 1383 300 340 132 33 chr4 104596731 104596944 -51033176 + MIR SINE MIR 27 260 -2 1 1383 1505 59 0 5 chr4 104596964 104597150 -51032970 + B2_Mm1a SINE B2 4 188 -5 1 1383 311 344 51 6 chr4 104597324 104597482 -51032638 + MIRc SINE MIR 100 264 -4 1 1383 672 278 44 69 chr4 104597577 104597851 -51032269 - MTEa LTR MaLR -3 376 110 1 1383 1020 253 98 80 chr4 104597849 104598248 -51031872 + MTD LTR MaLR 5 410 -9 1 1383 242 344 115 0 chr4 104598244 104598340 -51031780 - MTEa LTR MaLR -270 109 3 1 1383 1311 27 0 0 chr4 104598958 104599106 -51031014 + B1_Mus1 SINE Alu 1 148 0 1 1383 212 77 0 25 chr4 104599108 104599148 -51030972 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1383 372 294 135 43 chr4 104599154 104599479 -51030641 + MLT1J2 LTR MaLR 56 408 -3 1 1383 672 296 124 51 chr4 104599534 104599865 -51030255 - MLT1D LTR MaLR -127 378 24 1 1383 427 276 75 45 chr4 104600586 104600787 -51029333 - RMER15 LTR ERVL -33 542 336 1 1383 844 197 121 0 chr4 104601946 104602144 -51027976 + URR1B DNA MER1_type 4 225 0 1 1383 182 22 62 62 chr4 104602352 104602400 -51027720 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1383 1228 48 7 0 chr4 104602401 104602546 -51027574 - B1_Mm SINE Alu -1 146 1 1 1383 1831 155 78 46 chr4 104602953 104603366 -51026754 + Lx9 LINE L1 7217 7642 -2 1 1383 632 283 78 29 chr4 104603407 104603611 -51026509 + B3 SINE B2 2 215 -1 1 1383 2035 165 41 11 chr4 104604908 104605275 -51024845 - ORR1C1 LTR MaLR 0 378 1 1 1383 216 351 106 8 chr4 104605546 104605678 -51024442 + MIRc SINE MIR 76 220 -48 1 1383 207 206 101 41 chr4 104606226 104606300 -51023820 - MIR SINE MIR -110 158 82 1 1383 345 207 0 0 chr4 104606484 104606566 -51023554 + GA-rich Low_complexity Low_complexity 1 82 0 1 1383 390 139 23 11 chr4 104607059 104607146 -51022974 + CT-rich Low_complexity Low_complexity 2 89 0 1 1383 273 205 341 28 chr4 104607682 104607893 -51022227 + B4A SINE B4 2 278 -14 1 1383 2314 168 39 5 chr4 104610103 104610510 -51019610 + MTC LTR MaLR 1 421 0 1 1383 348 24 0 0 chr4 104611582 104611623 -51018497 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1383 272 223 10 0 chr4 104611643 104611746 -51018374 + (TCTG)n Simple_repeat Simple_repeat 1 104 0 1 1383 245 240 0 16 chr4 104611778 104611901 -51018219 + (TCTG)n Simple_repeat Simple_repeat 2 122 0 1 1383 335 240 27 0 chr4 104611934 104612009 -51018111 - RSINE1 SINE B4 0 165 89 1 1383 332 306 34 88 chr4 104612065 104612212 -51017908 - B4 SINE B4 -144 148 10 1 1383 267 303 8 54 chr4 104613928 104614057 -51016063 - L2 LINE L2 -559 2860 2738 1 1383 199 293 0 33 chr4 104614550 104614610 -51015510 + L2a LINE L2 3363 3420 -6 1 1383 1210 272 71 62 chr4 104614832 104615463 -51014657 + L1MB2 LINE L1 5450 6086 -85 1 1383 295 234 0 0 chr4 104615632 104615696 -51014424 - PB1D10 SINE Alu -7 110 47 1 1383 711 215 0 0 chr4 104616176 104616353 -51013767 + GA-rich Low_complexity Low_complexity 4 180 0 1 1383 203 182 22 22 chr4 104616732 104616777 -51013343 - MIRm SINE MIR -16 260 216 1 1383 654 189 106 0 chr4 104617308 104617440 -51012680 + B1_Mur1 SINE Alu 1 146 -3 1 1383 196 258 48 0 chr4 104618636 104618698 -51011422 + MIR SINE MIR 51 115 -147 1 1383 252 344 84 27 chr4 104618775 104619074 -51011046 + L2a LINE L2 2536 2851 -568 1 1383 1032 151 0 0 chr4 104619528 104619707 -51010413 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 1 1383 223 320 31 62 chr4 104619874 104620004 -51010116 + L2a LINE L2 3270 3395 -31 1 1383 192 250 15 45 chr4 104620079 104620146 -51009974 + MIRb SINE MIR 166 230 -38 1 1383 759 255 40 46 chr4 104622178 104622503 -51007617 + RLTR15 LTR ERVK 1 323 -36 1 1383 354 236 83 19 chr4 104622832 104622940 -51007180 - PB1D10 SINE Alu -2 115 1 1 1383 266 343 116 29 chr4 104625354 104625492 -51004628 - MamRep137 DNA TcMar? -294 150 1 1 1383 551 171 18 45 chr4 104625763 104625873 -51004247 + PB1D10 SINE Alu 6 112 -5 1 1383 518 338 79 35 chr4 104626015 104626331 -51003789 + MER2 DNA MER2_type 2 340 -5 1 1383 198 0 0 0 chr4 104627870 104627892 -51002228 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1383 1217 48 0 0 chr4 104628047 104628194 -51001926 - B1_Mus1 SINE Alu 0 148 2 1 1383 502 245 117 0 chr4 104628206 104628369 -51001751 - B3A SINE B2 -2 196 15 1 1383 195 385 0 0 chr4 104628993 104629084 -51001036 - L2 LINE L2 -534 2885 2795 1 1383 226 204 0 0 chr4 104629230 104629274 -51000846 - MIRc SINE MIR -119 149 106 2 1383 1148 257 39 0 chr4 104632469 104632749 -50997371 - B4A SINE B4 0 292 2 2 1383 296 280 110 0 chr4 104633218 104633318 -50996802 - PB1D10 SINE Alu -1 116 6 2 1383 283 234 95 66 chr4 104633554 104633691 -50996429 + MIRb SINE MIR 60 200 -68 2 1383 11996 201 109 43 chr4 104633931 104639110 -50991010 - Lx9 LINE L1 -1708 5936 50 2 1383 3013 217 42 42 chr4 104639116 104639935 -50990185 - L1_Rod LINE L1 -526 5321 4503 2 1383 402 306 184 0 chr4 104640074 104640280 -50989840 + MIR SINE MIR 14 257 -5 2 1383 21 36 0 0 chr4 104641252 104641280 -50988840 + AT_rich Low_complexity Low_complexity 1 28 0 2 1383 701 258 87 10 chr4 104641609 104641805 -50988315 + B3 SINE B2 1 211 -5 2 1383 24 0 0 0 chr4 104641999 104642023 -50988097 + AT_rich Low_complexity Low_complexity 1 24 0 2 1383 243 146 0 0 chr4 104643166 104643207 -50986913 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1383 472 237 67 8 chr4 104643247 104643366 -50986754 - RSINE1 SINE B4 -33 132 7 2 1383 348 148 0 0 chr4 104644946 104645007 -50985113 + (TCC)n Simple_repeat Simple_repeat 2 62 0 2 1383 648 245 0 0 chr4 104645382 104645521 -50984599 + B3A SINE B2 9 147 -51 2 1383 324 102 0 0 chr4 104645542 104645591 -50984529 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1383 26 0 0 0 chr4 104646008 104646034 -50984086 + AT_rich Low_complexity Low_complexity 1 26 0 2 1383 632 93 80 58 chr4 104646956 104647093 -50983027 - Lx LINE L1 -4 6650 6511 2 1383 232 217 50 0 chr4 104647147 104647207 -50982913 + B4A SINE B4 1 63 -229 2 1383 436 266 85 48 chr4 104647339 104647611 -50982509 - RMER5 LTR ERV1 -125 409 128 2 1383 313 314 26 71 chr4 104647634 104647747 -50982373 + RSINE1 SINE B4 58 165 0 2 1383 22 35 0 0 chr4 104647754 104647783 -50982337 + AT_rich Low_complexity Low_complexity 1 29 0 2 1383 1403 197 57 27 chr4 104648457 104648827 -50981293 - Lx7 LINE L1 0 7696 7316 2 1383 682 262 83 10 chr4 104648874 104649078 -50981042 - Lx7 LINE L1 -284 7412 7194 2 1383 9260 157 37 12 chr4 104649096 104650024 -50980096 - L1_Mur3 LINE L1 -2869 3011 2060 2 1383 432 0 0 0 chr4 104650024 104650072 -50980048 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1383 9260 168 47 14 chr4 104650072 104651545 -50978575 - L1_Mur3 LINE L1 -3821 2059 540 2 1383 642 60 0 0 chr4 104651844 104651927 -50978193 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1383 324 0 0 0 chr4 104651952 104651988 -50978132 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1383 222 326 41 14 chr4 104652536 104652682 -50977438 - MIRb SINE MIR -116 152 3 2 1383 255 310 109 10 chr4 104652909 104653010 -50977110 + MER117 DNA MER1_type 45 155 -42 2 1383 341 298 16 0 chr4 104653233 104653354 -50976766 - MER5A1 DNA MER1_type -38 128 6 2 1383 512 295 124 7 chr4 104654274 104654547 -50975573 + L1MD LINE L1 3207 3511 -2635 2 1383 717 261 113 47 chr4 104654549 104654823 -50975297 + B4A SINE B4 1 292 0 2 1383 261 278 11 22 chr4 104654832 104654924 -50975196 + (CATA)n Simple_repeat Simple_repeat 4 94 0 2 1383 1800 286 150 41 chr4 104654934 104656283 -50973837 + L1MD LINE L1 3499 4994 -1152 2 1383 214 306 0 33 chr4 104656700 104656802 -50973318 + MIRc SINE MIR 85 177 -85 2 1383 333 0 0 0 chr4 104657107 104657144 -50972976 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1383 302 167 131 0 chr4 104657152 104657236 -50972884 - Lx9 LINE L1 -1 7643 7549 2 1383 1060 224 9 0 chr4 104657591 104657805 -50972315 - B3 SINE B2 0 216 1 2 1383 306 0 0 0 chr4 104660693 104660727 -50969393 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1383 279 0 0 0 chr4 104660791 104660822 -50969298 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1383 237 276 13 26 chr4 104663104 104663182 -50966938 + MIRc SINE MIR 15 91 -177 2 1383 189 0 0 0 chr4 104663662 104663683 -50966437 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1383 1065 242 196 13 chr4 104663817 104664128 -50965992 - ORR1D1 LTR MaLR -1 373 6 2 1383 197 250 198 23 chr4 104664257 104664343 -50965777 - L2a LINE L2 -8 3418 3318 2 1383 680 299 85 18 chr4 104664356 104664979 -50965141 + L1_Mur3 LINE L1 4922 5634 -663 2 1383 208 229 0 20 chr4 104665094 104665143 -50964977 + G-rich Low_complexity Low_complexity 4 51 0 2 1383 589 224 171 86 chr4 104665172 104665441 -50964679 + B4 SINE B4 1 292 0 2 1383 854 250 86 116 chr4 104665904 104666266 -50963854 + MTEb LTR MaLR 20 370 -9 2 1383 788 251 99 0 chr4 104666815 104667006 -50963114 + B3 SINE B2 2 211 -5 2 1383 221 135 19 0 chr4 104667518 104667570 -50962550 + A-rich Low_complexity Low_complexity 2 54 0 2 1383 392 321 110 28 chr4 104667946 104668164 -50961956 - ORR1E LTR MaLR -118 241 6 2 1383 379 271 0 23 chr4 104668869 104668956 -50961164 - B3A SINE B2 -70 128 44 2 1383 235 250 83 0 chr4 104669360 104669420 -50960700 - RMER15 LTR ERVL -108 467 403 2 1383 1991 310 95 58 chr4 104669421 104669921 -50960199 - Lx8 LINE L1 -208 7265 6746 2 1383 1036 173 124 0 chr4 104669921 104670106 -50960014 + B3 SINE B2 2 209 -7 2 1383 1991 310 95 58 chr4 104670106 104670620 -50959500 - Lx8 LINE L1 -728 6745 6214 2 1383 919 181 78 123 chr4 104670621 104671040 -50959080 - ORR1C1 LTR MaLR 0 378 17 2 1383 265 200 0 0 chr4 104671215 104671265 -50958855 + B1F SINE Alu 87 136 -13 2 1383 450 0 0 0 chr4 104671277 104671327 -50958793 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1383 216 0 0 0 chr4 104675004 104675028 -50955092 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1383 209 179 0 0 chr4 104675182 104675221 -50954899 + MIRb SINE MIR 215 253 -15 2 1383 216 139 0 0 chr4 104675187 104675223 -50954897 + L2a LINE L2 3374 3409 -17 2 1383 465 62 0 0 chr4 104676054 104676119 -50954001 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1383 337 263 111 0 chr4 104677549 104677648 -50952472 - PB1 SINE Alu 0 127 18 2 1383 211 318 32 64 chr4 104678231 104678325 -50951795 - L2c LINE L2 -4 3383 3293 2 1383 399 270 45 10 chr4 104678440 104678549 -50951571 - PB1D10 SINE Alu -2 118 4 2 1383 284 317 43 18 chr4 104678795 104678959 -50951161 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 2 1383 441 211 0 0 chr4 104679921 104679992 -50950128 - tRNA-Glu-GAG_ tRNA tRNA -3 72 2 2 1383 275 286 43 11 chr4 104680646 104680738 -50949382 + B1F1 SINE Alu 1 95 -54 2 1383 357 286 0 0 chr4 104680740 104680817 -50949303 + ID4_ SINE ID 1 77 -6 2 1383 22 0 0 0 chr4 104680983 104681005 -50949115 + AT_rich Low_complexity Low_complexity 1 22 0 2 1383 577 283 102 98 chr4 104681073 104681246 -50948874 - Lx7 LINE L1 -1587 6109 5932 2 1383 2947 163 53 97 chr4 104681246 104681968 -50948152 + RMER6C LTR ERVK 1 690 0 2 1383 813 258 75 115 chr4 104681968 104682140 -50947980 - Lx7 LINE L1 -1765 5931 5707 2 1383 345 47 0 0 chr4 104682140 104682183 -50947937 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 2 1383 813 244 60 124 chr4 104682183 104682194 -50947926 - L1_Rod LINE L1 -141 5706 5706 2 1383 644 214 169 0 chr4 104682194 104682348 -50947772 - B3A SINE B2 -18 180 1 2 1383 813 244 60 124 chr4 104682348 104682586 -50947534 - Lx7 LINE L1 -141 5706 5477 2 1383 225 0 0 0 chr4 104682972 104682997 -50947123 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 2 1383 223 114 22 43 chr4 104683182 104683228 -50946892 + MIRm SINE MIR 73 117 -159 2 1383 1117 108 112 57 chr4 104683488 104683741 -50946379 + Lx LINE L1 6353 6651 -3 2 1383 445 104 0 15 chr4 104683740 104683808 -50946312 + L1_Rod LINE L1 2391 2457 -3390 2 1383 387 227 34 0 chr4 104685072 104685160 -50944960 - MTE2b LTR MaLR -13 366 276 2 1383 1126 197 273 27 chr4 104685234 104685531 -50944589 + ORR1D2 LTR MaLR 1 370 0 2 1383 240 287 138 0 chr4 104689483 104689570 -50940550 + B3A SINE B2 32 130 -68 2 1383 230 270 0 16 chr4 104690116 104690180 -50939940 + Lx9 LINE L1 7285 7347 -297 2 1383 286 255 280 16 chr4 104690342 104690631 -50939489 + L1M2 LINE L1 2327 2702 -3441 2 1383 1812 130 48 26 chr4 104691380 104691810 -50938310 - ORR1A2 LTR MaLR -8 386 1 2 1383 6688 69 117 3 chr4 104691814 104692756 -50937364 + Lx LINE L1 5606 6654 0 2 1383 1798 293 78 41 chr4 104692728 104693909 -50936211 + L1M2 LINE L1 4153 5377 -766 2 1383 415 222 41 8 chr4 104694128 104694251 -50935869 + Lx9 LINE L1 5353 5486 -958 2 1383 351 127 0 0 chr4 104694265 104694328 -50935792 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1383 1023 284 77 22 chr4 104694368 104694779 -50935341 + Lx9 LINE L1 5456 5920 -1553 2 1383 261 275 0 45 chr4 104695118 104695297 -50934823 + GA-rich Low_complexity Low_complexity 2 172 0 2 1383 227 286 0 45 chr4 104695446 104695625 -50934495 + GA-rich Low_complexity Low_complexity 2 172 0 2 1383 301 269 70 56 chr4 104695711 104695946 -50934174 + L1_Mur3 LINE L1 3236 3480 -2367 2 1383 1188 28 0 0 chr4 104695959 104696102 -50934018 + B1_Mus1 SINE Alu 6 148 0 2 1383 224 183 56 0 chr4 104696106 104696177 -50933943 + A-rich Low_complexity Low_complexity 2 76 0 2 1383 1586 267 66 32 chr4 104696225 104696389 -50933731 + L1M2 LINE L1 3614 3773 -2370 2 1383 5439 5 0 0 chr4 104696389 104696959 -50933161 + L1Md_A LINE L1 6013 6582 0 2 1383 1586 267 66 32 chr4 104696959 104697386 -50932734 + L1M2 LINE L1 3774 4225 -1918 2 1383 523 240 25 0 chr4 104697394 104697515 -50932605 + RSINE1 SINE B4 4 127 -38 2 1383 426 277 67 133 chr4 104697596 104697788 -50932332 + L1_Mur3 LINE L1 4188 4374 -1506 2 1383 601 170 395 0 chr4 104697788 104697935 -50932185 + B3 SINE B2 2 206 -10 2 1383 426 277 67 133 chr4 104697935 104698088 -50932032 + L1_Mur3 LINE L1 4375 4510 -1370 2 1383 459 292 106 25 chr4 104698104 104698388 -50931732 + L1_Rod LINE L1 4800 5106 -741 2 1383 4864 180 71 8 chr4 104698399 104699350 -50930770 + Lx9 LINE L1 6473 7523 -121 2 1383 513 0 0 0 chr4 104699350 104699407 -50930713 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1383 338 185 25 92 chr4 104699407 104699499 -50930621 + Lx9 LINE L1 7524 7612 -32 2 1383 500 45 15 0 chr4 104699500 104699567 -50930553 + (GGAAA)n Simple_repeat Simple_repeat 3 70 0 2 1383 795 133 0 0 chr4 104699570 104699698 -50930422 + (GGAA)n Simple_repeat Simple_repeat 3 130 0 2 1383 601 292 102 64 chr4 104699698 104700341 -50929779 + L1_Rod LINE L1 5085 5821 -368 3 1383 563 247 55 61 chr4 104700352 104700555 -50929565 + B3 SINE B2 1 191 -4 3 1383 229 225 123 12 chr4 104700558 104700639 -50929481 + L1_Rod LINE L1 5831 5920 -380 3 1383 899 279 14 0 chr4 104700902 104701121 -50928999 + ID_B1 SINE B4 1 222 -2 3 1383 222 270 20 20 chr4 104701143 104701233 -50928887 + GA-rich Low_complexity Low_complexity 1 90 0 3 1383 727 164 8 23 chr4 104701399 104701530 -50928590 + B3 SINE B2 1 129 -87 3 1383 486 0 0 0 chr4 104701530 104701584 -50928536 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1383 271 173 171 13 chr4 104702742 104702818 -50927302 - MIR SINE MIR -79 183 96 3 1383 21 71 0 0 chr4 104704415 104704457 -50925663 + AT_rich Low_complexity Low_complexity 1 42 0 3 1383 273 204 101 55 chr4 104706025 104706134 -50923986 - PB1D10 SINE Alu -2 115 2 3 1383 29 22 0 21 chr4 104710444 104710466 -50919654 + AT_rich Low_complexity Low_complexity 1 22 0 3 1383 278 258 168 63 chr4 104710466 104710561 -50919559 - PB1D10 SINE Alu -11 106 2 3 1383 29 22 0 21 chr4 104710561 104710585 -50919535 + AT_rich Low_complexity Low_complexity 1 24 0 3 1383 28 61 0 0 chr4 104710610 104710659 -50919461 + AT_rich Low_complexity Low_complexity 1 49 0 3 1383 386 295 20 67 chr4 104710873 104710885 -50919235 + ID_B1 SINE B4 79 150 -74 3 1383 669 208 23 23 chr4 104710885 104711013 -50919107 + B1_Mur2 SINE Alu 9 136 -13 3 1383 518 277 35 0 chr4 104711225 104711366 -50918754 + MTE2b-int LTR MaLR 1425 1570 -10 3 1383 1271 271 42 0 chr4 104711375 104711685 -50918435 + MTE2b LTR MaLR 1 323 -56 3 1383 270 58 57 19 chr4 104711685 104711738 -50918382 + (TCCC)n Simple_repeat Simple_repeat 1 55 0 3 1383 242 190 121 0 chr4 104711744 104711802 -50918318 + MTE2b LTR MaLR 313 377 -2 3 1383 250 269 75 0 chr4 104712927 104712994 -50917126 + MIR SINE MIR 48 119 -143 3 1383 1432 278 104 16 chr4 104713051 104713665 -50916455 + Charlie1a DNA MER1_type 533 1200 -255 3 1383 247 376 24 16 chr4 104713693 104713820 -50916300 + B1F2 SINE Alu 16 143 -6 3 1383 291 246 33 0 chr4 104713849 104713910 -50916210 + ID2 SINE ID 8 70 -13 3 1383 252 283 93 40 chr4 104713931 104714082 -50916038 + Charlie1a DNA MER1_type 1296 1454 -1 3 1383 225 0 0 0 chr4 104714328 104714353 -50915767 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 3 1383 1961 188 73 5 chr4 104714793 104715178 -50914942 + MTD LTR MaLR 1 411 -8 3 1383 225 0 0 0 chr4 104715268 104715293 -50914827 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1383 346 303 149 25 chr4 104715400 104715715 -50914405 + Lx8 LINE L1 7120 7473 0 3 1383 591 253 23 87 chr4 104715852 104715952 -50914168 + B4 SINE B4 127 225 -67 3 1383 261 0 0 0 chr4 104715952 104715981 -50914139 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1383 591 253 23 87 chr4 104715981 104716053 -50914067 + B4 SINE B4 226 288 -4 3 1383 299 341 43 11 chr4 104716385 104716477 -50913643 + L2b LINE L2 3276 3370 -5 3 1383 732 230 87 64 chr4 104716910 104717128 -50912992 - ID_B1 SINE B4 0 224 2 3 1383 780 272 113 44 chr4 104717935 104718254 -50911866 + ORR1E LTR MaLR 1 341 -18 3 1383 259 209 209 0 chr4 104718844 104718935 -50911185 + MER2 DNA MER2_type 87 196 -149 3 1383 358 145 179 26 chr4 104719551 104719629 -50910491 - PB1D10 SINE Alu -4 123 34 3 1383 479 216 176 0 chr4 104720183 104720308 -50909812 + B1_Mur1 SINE Alu 2 148 -1 3 1383 866 194 178 0 chr4 104720578 104720758 -50909362 - B3 SINE B2 -3 213 2 3 1383 402 257 113 94 chr4 104722149 104722308 -50907812 + RSINE1 SINE B4 4 165 0 3 1383 599 202 76 0 chr4 104722647 104722766 -50907354 + B1_Mur1 SINE Alu 1 128 -21 3 1383 741 123 0 0 chr4 104723003 104723109 -50907011 + B2_Mm2 SINE B2 2 107 -88 3 1383 189 0 0 0 chr4 104723579 104723600 -50906520 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1383 2965 81 8 2 chr4 104725103 104725501 -50904619 - MTB LTR MaLR 0 400 1 3 172 6752 92 36 58 chr4 104725501 104726622 -50903498 - MTB-int LTR MaLR 0 1098 3 3 1384 2841 72 8 23 chr4 104726625 104727023 -50903097 - MTB LTR MaLR -8 392 1 3 1384 317 306 36 27 chr4 104727067 104727178 -50902942 + PB1D10 SINE Alu 3 114 -3 3 1384 330 311 57 28 chr4 104728083 104728189 -50901931 - PB1D10 SINE Alu -21 128 20 3 1384 22 0 0 0 chr4 104730057 104730079 -50900041 + AT_rich Low_complexity Low_complexity 1 22 0 3 1384 250 181 139 0 chr4 104730849 104730921 -50899199 - L1MC5 LINE L1 -385 7576 7495 3 1384 709 216 205 0 chr4 104731195 104731366 -50898754 - B3 SINE B2 -10 206 1 3 1384 271 225 113 0 chr4 104731457 104731528 -50898592 + B1_Mur2 SINE Alu 66 144 -5 3 1384 180 200 44 123 chr4 104731580 104731694 -50898426 + L2 LINE L2 802 906 -2513 3 1384 216 341 12 24 chr4 104731972 104732056 -50898064 + L2 LINE L2 2004 2086 -1333 3 1384 683 234 36 86 chr4 104732122 104732342 -50897778 + B3 SINE B2 8 216 0 3 1384 243 0 0 0 chr4 104732714 104732741 -50897379 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1384 1156 55 14 0 chr4 104732741 104732886 -50897234 - B1_Mus2 SINE Alu 0 147 1 3 1384 860 331 158 34 chr4 104732947 104733473 -50896647 + L2 LINE L2 2349 2948 -471 3 1384 1186 101 141 0 chr4 104733473 104733671 -50896449 - URR1A DNA MER1_type 0 226 1 3 1384 860 331 158 34 chr4 104733671 104733725 -50896395 + L2 LINE L2 2949 3001 -418 3 1384 195 312 128 73 chr4 104734164 104734382 -50895738 + L2 LINE L2 2400 2629 -790 3 1384 1183 266 116 14 chr4 104734395 104734879 -50895241 + Lx8 LINE L1 6754 7286 -187 3 1384 23 33 0 0 chr4 104735047 104735077 -50895043 + AT_rich Low_complexity Low_complexity 1 30 0 3 1384 21 82 0 0 chr4 104735188 104735237 -50894883 + AT_rich Low_complexity Low_complexity 1 49 0 3 1384 265 327 31 43 chr4 104735279 104735442 -50894678 + L2 LINE L2 2677 2837 -582 3 1384 36964 6 0 1 chr4 104735878 104741653 -50888467 + L1Md_A LINE L1 1 5586 -297 3 1384 9093 1 0 0 chr4 104741653 104742649 -50887471 + L1Md_A LINE L1 5587 6582 0 3 1384 222 37 0 0 chr4 104742827 104742854 -50887266 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1384 180 97 0 0 chr4 104742920 104742951 -50887169 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1384 1027 274 39 80 chr4 104743568 104743992 -50886128 + MTE2a LTR MaLR 3 419 0 3 1384 383 243 29 181 chr4 104744273 104744444 -50885676 + B1F SINE Alu 5 149 0 3 1384 475 246 26 17 chr4 104745014 104745130 -50884990 + B1F2 SINE Alu 1 117 -32 3 1384 1317 235 116 8 chr4 104745166 104745544 -50884576 - MTD LTR MaLR 0 419 1 3 1384 710 311 102 71 chr4 104745574 104746024 -50884096 - MLT1D LTR MaLR -39 466 3 3 1384 919 162 7 0 chr4 104746234 104746376 -50883744 + B1_Mus1 SINE Alu 1 143 -5 3 1384 944 126 17 6 chr4 104746378 104746553 -50883567 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 3 1384 242 162 12 70 chr4 104746561 104746632 -50883488 + GA-rich Low_complexity Low_complexity 3 70 0 3 1384 623 48 0 12 chr4 104746632 104746716 -50883404 + (GGGAA)n Simple_repeat Simple_repeat 4 86 0 3 1384 242 162 12 70 chr4 104746716 104746730 -50883390 + polypurine Low_complexity Low_complexity 71 83 0 3 1384 1181 92 0 5 chr4 104746731 104746940 -50883180 + (GAAA)n Simple_repeat Simple_repeat 1 207 0 3 1384 315 275 121 0 chr4 104747258 104747349 -50882771 + MIRb SINE MIR 130 231 -37 3 1384 340 324 56 0 chr4 104747585 104747693 -50882427 - PB1D10 SINE Alu -1 116 3 3 1384 1149 43 7 0 chr4 104748568 104748707 -50881413 - B1_Mus2 SINE Alu -6 141 2 3 1384 204 243 0 129 chr4 104749073 104749158 -50880962 + L2 LINE L2 2419 2492 -927 3 1384 264 250 71 71 chr4 104749254 104749366 -50880754 - MIR SINE MIR 0 262 151 3 1384 494 257 87 157 chr4 104749488 104749890 -50880230 + MTEa LTR MaLR 1 374 -5 3 1384 798 194 0 7 chr4 104750278 104750423 -50879697 + B1_Mus1 SINE Alu 4 147 -1 3 1384 1147 75 0 7 chr4 104750449 104750597 -50879523 - B1_Mus2 SINE Alu 0 147 1 3 1384 603 222 0 0 chr4 104751476 104751584 -50878536 - B3A SINE B2 -87 111 4 3 1384 2870 262 71 36 chr4 104751646 104752674 -50877446 - Lx8 LINE L1 -123 7350 6287 3 1384 523 287 86 13 chr4 104752808 104752960 -50877160 + RSINE1 SINE B4 3 165 0 3 1384 417 181 0 53 chr4 104753172 104753248 -50876872 - B1_Mur1 SINE Alu -10 139 68 3 1384 358 203 0 55 chr4 104753250 104753323 -50876797 - B1_Mur1 SINE Alu -41 108 40 3 1384 186 298 91 55 chr4 104753740 104753850 -50876270 - MIR SINE MIR -135 127 14 3 1384 188 369 49 8 chr4 104753857 104753980 -50876140 + L3 LINE CR1 4362 4489 0 3 1384 368 60 358 0 chr4 104754405 104754472 -50875648 + B1_Mm SINE Alu 57 147 0 3 1384 426 241 0 0 chr4 104754857 104754936 -50875184 + RSINE1 SINE B4 4 82 -83 3 1384 2024 90 0 0 chr4 104754938 104755227 -50874893 - L1_Mm LINE L1 -1303 4580 4292 3 1384 289 250 41 14 chr4 104755229 104755302 -50874818 + RSINE1 SINE B4 88 162 -3 3 1384 252 0 0 0 chr4 104755304 104755332 -50874788 + (GAA)n Simple_repeat Simple_repeat 3 30 0 3 1384 1053 145 0 0 chr4 104755332 104755511 -50874609 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 1384 1284 89 0 0 chr4 104755521 104755701 -50874419 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1384 26 0 0 0 chr4 104755891 104755917 -50874203 + AT_rich Low_complexity Low_complexity 1 26 0 3 1384 328 203 14 0 chr4 104756986 104757055 -50873065 + L1M5 LINE L1 5368 5437 -725 3 1384 360 113 0 0 chr4 104757061 104757114 -50873006 - ORR1D1 LTR MaLR 0 374 322 3 1384 420 159 0 0 chr4 104757117 104757186 -50872934 + ORR1B1 LTR MaLR 326 394 0 3 1384 1140 196 31 27 chr4 104757186 104757419 -50872701 + ORR1B1-int LTR MaLR 120 353 -1017 3 1384 191 362 67 0 chr4 104757966 104758071 -50872049 - MIRb SINE MIR -121 147 36 3 1384 256 218 146 0 chr4 104758221 104758276 -50871844 - B4A SINE B4 -6 286 224 3 1384 5770 187 73 19 chr4 104758296 104759566 -50870554 + Lx5 LINE L1 5709 7047 -3 3 1384 606 257 41 41 chr4 104759656 104759851 -50870269 + B3A SINE B2 4 198 0 3 1384 232 304 92 46 chr4 104759977 104760108 -50870012 + Kanga2_a DNA Tc2 467 603 -285 3 1384 694 249 90 113 chr4 104760131 104760832 -50869288 + L1MA5 LINE L1 2977 3661 -2482 3 1384 306 0 0 0 chr4 104760832 104760866 -50869254 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1384 778 185 167 78 chr4 104760921 104761191 -50868929 - RLTR25B LTR ERVK 0 1028 735 4 1384 4802 132 51 35 chr4 104761306 104762220 -50867900 - RLTR25A LTR ERVK -170 858 1 4 1384 240 261 31 0 chr4 104762285 104762350 -50867770 + L1MA5 LINE L1 3783 3849 -2294 3 1384 543 308 46 0 chr4 104762353 104762483 -50867637 + RSINE1 SINE B4 11 146 -19 4 1384 213 262 0 0 chr4 104762575 104762617 -50867503 + RSINE1 SINE B4 3 44 -121 4 1384 570 261 224 14 chr4 104762707 104763060 -50867060 + L1MA5 LINE L1 4974 5400 -743 3 1384 292 340 85 0 chr4 104763152 104763246 -50866874 - RMER20B LTR ERVK -32 595 494 4 1384 458 315 115 85 chr4 104763290 104763812 -50866308 - RMER13A LTR ERVK -28 599 30 4 1384 622 267 172 9 chr4 104763999 104764324 -50865796 + L1MA5 LINE L1 5621 5998 -302 3 1384 264 312 92 0 chr4 104764499 104764690 -50865430 + L1M5 LINE L1 5692 5899 -341 4 1384 757 319 0 0 chr4 104764920 104765101 -50865019 + ORR1E LTR MaLR 64 244 -115 4 1384 3711 189 35 57 chr4 104765101 104765975 -50864145 + RLTR13A LTR ERVK 1 855 0 4 1384 369 287 40 28 chr4 104765975 104766110 -50864010 + ORR1E LTR MaLR 229 374 0 4 1384 1248 47 0 0 chr4 104766136 104766284 -50863836 + B1_Mus1 SINE Alu 1 148 0 4 1384 391 284 164 0 chr4 104766318 104766434 -50863686 + B1F2 SINE Alu 3 137 -12 4 1384 1185 48 7 0 chr4 104766434 104766579 -50863541 + B1_Mm SINE Alu 2 147 0 4 1384 1044 287 115 0 chr4 104767100 104767431 -50862689 - MTEa LTR MaLR -8 371 3 4 1384 5222 272 48 25 chr4 104767434 104768933 -50861187 - MTEa-int LTR MaLR 0 1580 48 4 1384 645 308 147 21 chr4 104768953 104769263 -50860857 - MTEa LTR MaLR 0 359 28 4 1384 948 149 67 17 chr4 104769369 104769547 -50860573 + B2_Mm2 SINE B2 2 188 -7 4 1384 299 253 0 92 chr4 104769999 104770060 -50860060 + B3A SINE B2 97 156 -42 4 1384 524 66 0 26 chr4 104770060 104770138 -50859982 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 4 1384 299 253 0 92 chr4 104770138 104770185 -50859935 + B3A SINE B2 157 195 -3 4 1384 366 262 148 17 chr4 104770349 104770586 -50859534 - L1MEg LINE L1 -5145 939 672 4 1384 264 358 56 22 chr4 104771640 104771871 -50858249 - L3 LINE CR1 -640 3849 3611 4 1384 852 190 38 0 chr4 104771937 104772095 -50858025 + B3A SINE B2 2 165 -33 4 1384 1161 84 30 6 chr4 104772110 104772278 -50857842 - B2_Mm2 SINE B2 -9 186 15 4 1384 25 0 0 0 chr4 104772283 104772308 -50857812 + AT_rich Low_complexity Low_complexity 1 25 0 4 1384 219 86 16 65 chr4 104774263 104774325 -50855795 + T-rich Low_complexity Low_complexity 2 60 0 4 1384 1077 82 7 0 chr4 104774329 104774476 -50855644 - B1_Mus1 SINE Alu 0 148 1 4 1384 251 307 22 33 chr4 104774522 104774613 -50855507 - PB1D10 SINE Alu 0 117 28 4 1384 969 65 0 0 chr4 104775043 104775167 -50854953 + B1_Mus2 SINE Alu 1 124 -23 4 1384 483 130 0 0 chr4 104775174 104775251 -50854869 + (GGA)n Simple_repeat Simple_repeat 3 79 0 4 1384 1200 111 0 0 chr4 104775251 104775431 -50854689 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1384 247 289 39 47 chr4 104776206 104776333 -50853787 + L1M4 LINE L1 4902 5027 -1119 4 1384 1103 84 0 0 chr4 104776559 104776701 -50853419 + B1_Mm SINE Alu 1 142 -5 4 1384 282 29 0 0 chr4 104776712 104776747 -50853373 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1384 594 242 116 112 chr4 104776777 104777017 -50853103 + ID_B1 SINE B4 10 249 -43 4 1384 317 300 8 37 chr4 104777131 104777277 -50852843 - MLT1A1 LTR MaLR 0 408 236 4 1384 462 180 21 4 chr4 104777561 104777657 -50852463 + B1_Mur2 SINE Alu 49 149 0 4 1384 1105 81 0 13 chr4 104777823 104777973 -50852147 + B1_Mus1 SINE Alu 1 148 0 4 1384 543 101 0 0 chr4 104777980 104778059 -50852061 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 4 1384 569 235 22 0 chr4 104778061 104778197 -50851923 + L1M4 LINE L1 5533 5671 -493 4 1384 400 275 97 63 chr4 104778483 104778751 -50851369 + RLTR12B LTR ERVK 2 278 -250 4 1384 469 282 110 17 chr4 104778920 104779466 -50850654 + L1MB8 LINE L1 5575 6182 -2 4 1384 562 244 193 36 chr4 104779479 104779759 -50850361 + Lx8 LINE L1 7148 7471 -2 4 1384 1336 65 48 16 chr4 104779770 104779957 -50850163 - B2_Mm2 SINE B2 -1 194 2 4 1384 826 236 92 89 chr4 104780054 104780412 -50849708 - MTE2a LTR MaLR -20 359 1 4 1384 207 309 172 4 chr4 104780897 104781141 -50848979 + L2a LINE L2 3114 3398 -28 4 1384 236 290 75 8 chr4 104781834 104782012 -50848108 + MIRc SINE MIR 48 238 -30 4 1384 396 103 0 0 chr4 104782440 104782498 -50847622 + (CCG)n Simple_repeat Simple_repeat 2 59 0 4 1384 25 51 0 0 chr4 104782511 104782550 -50847570 + GC_rich Low_complexity Low_complexity 1 39 0 4 1384 1210 225 66 55 chr4 104782872 104783255 -50846865 + RMER10A LTR ERVL 1 388 -54 4 1384 2006 128 121 36 chr4 104783255 104783643 -50846477 - MTC LTR MaLR 0 421 1 4 1384 1210 225 66 55 chr4 104783643 104783696 -50846424 + RMER10A LTR ERVL 389 442 0 4 1384 180 0 0 0 chr4 104784006 104784026 -50846094 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1384 208 259 104 64 chr4 104785013 104785154 -50844966 - MIRc SINE MIR -108 160 9 4 1384 1424 140 4 18 chr4 104785660 104785885 -50844235 - URR1B DNA MER1_type 0 225 4 4 1384 1699 121 10 31 chr4 104786059 104786348 -50843772 - Lx4B LINE L1 -7 7051 6769 4 1384 231 235 0 0 chr4 104786742 104786793 -50843327 + T-rich Low_complexity Low_complexity 1 51 0 4 1384 870 184 14 7 chr4 104786820 104786968 -50843152 - B1_Mur4 SINE Alu -1 149 1 4 1384 411 291 88 33 chr4 104786990 104787171 -50842949 + MTEb LTR MaLR 107 297 -82 4 1384 267 315 45 27 chr4 104787459 104787570 -50842550 + PB1D10 SINE Alu 5 117 0 4 1384 305 289 68 23 chr4 104787655 104787920 -50842200 - L1MC5 LINE L1 -176 7785 7509 4 1384 285 297 80 9 chr4 104788237 104788349 -50841771 + B1F SINE Alu 1 120 -29 4 1384 22 0 0 0 chr4 104788388 104788410 -50841710 + AT_rich Low_complexity Low_complexity 1 22 0 4 1384 234 372 13 0 chr4 104788419 104788497 -50841623 + ID4_ SINE ID 3 81 -2 4 1384 518 114 26 17 chr4 104788497 104788613 -50841507 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 4 1384 2180 86 13 0 chr4 104788621 104788935 -50841185 - ORR1A2 LTR MaLR -8 319 2 4 1384 252 0 0 0 chr4 104788935 104788963 -50841157 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 4 1384 1372 82 5 5 chr4 104788973 104789157 -50840963 + B2_Mm1a SINE B2 2 185 -8 4 1384 468 283 122 64 chr4 104790411 104790706 -50839414 - MER31B LTR ERV1 -32 434 123 4 1384 240 343 68 47 chr4 104791122 104791443 -50838677 - L2 LINE L2 -550 2869 2542 4 1384 1002 259 169 3 chr4 104791702 104792016 -50838104 - MTEa LTR MaLR -12 367 2 4 1384 184 326 101 0 chr4 104792076 104792205 -50837915 - L2 LINE L2 -1136 2283 2142 4 1384 450 277 80 144 chr4 104792481 104792793 -50837327 - B4A SINE B4 0 292 1 4 1384 317 278 10 0 chr4 104792868 104792965 -50837155 - L2 LINE L2 -1606 1813 1716 4 1384 249 33 0 0 chr4 104793455 104793485 -50836635 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 4 1384 299 150 0 16 chr4 104794120 104794181 -50835939 + CT-rich Low_complexity Low_complexity 2 61 0 4 1384 1389 46 58 0 chr4 104794908 104795081 -50835039 + B2_Mm1t SINE B2 2 184 -9 4 1384 2094 72 46 4 chr4 104795347 104795627 -50834493 + L1_Mus1 LINE L1 6275 6566 -1 4 1384 216 0 0 0 chr4 104796054 104796078 -50834042 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1384 1019 52 7 0 chr4 104796199 104796335 -50833785 + B1_Mus1 SINE Alu 10 146 -2 4 1384 1215 27 0 39 chr4 104796539 104796692 -50833428 - B1_Mus2 SINE Alu 0 147 1 4 1384 494 271 97 16 chr4 104797599 104797723 -50832397 - B1F1 SINE Alu -12 137 4 4 1384 641 258 26 107 chr4 104797824 104798058 -50832062 + B4 SINE B4 70 284 -8 4 1384 182 37 0 36 chr4 104798639 104798667 -50831453 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 4 1384 833 259 40 52 chr4 104799066 104799315 -50830805 - Lx8 LINE L1 -991 6482 6237 4 1384 414 0 0 0 chr4 104799359 104799405 -50830715 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1384 2530 281 109 25 chr4 104799449 104800346 -50829774 + Lx8 LINE L1 6500 7472 -1 4 1384 1196 55 0 0 chr4 104800553 104800699 -50829421 + B1_Mus2 SINE Alu 2 147 0 4 1384 201 333 0 0 chr4 104800720 104800783 -50829337 - L2a LINE L2 -21 3405 3343 4 1384 31 68 0 0 chr4 104800898 104800957 -50829163 + AT_rich Low_complexity Low_complexity 1 59 0 4 1384 262 237 0 0 chr4 104801047 104801106 -50829014 + MLT1I LTR MaLR 77 135 -276 4 1384 258 304 21 42 chr4 104802009 104802105 -50828015 - L2b LINE L2 0 3375 3282 4 1384 192 77 0 0 chr4 104802679 104802705 -50827415 + (CG)n Simple_repeat Simple_repeat 2 27 0 4 1384 407 238 29 75 chr4 104802722 104802895 -50827225 - RSINE1 SINE B4 0 165 1 4 1384 1087 71 0 0 chr4 104803127 104803268 -50826852 + B1_Mus1 SINE Alu 1 141 -7 4 1384 225 0 0 0 chr4 104803268 104803293 -50826827 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1384 270 0 0 0 chr4 104804082 104804112 -50826008 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1384 288 288 95 50 chr4 104804560 104804739 -50825381 + L2 LINE L2 1395 1581 -1838 4 1384 22 0 0 0 chr4 104804788 104804810 -50825310 + AT_rich Low_complexity Low_complexity 1 22 0 4 1384 496 196 43 43 chr4 104804875 104804992 -50825128 + B3A SINE B2 3 119 -79 4 1384 373 236 0 0 chr4 104805685 104805757 -50824363 - ID4 SINE ID 0 83 12 4 1384 487 277 29 7 chr4 104805781 104805919 -50824201 - B1F SINE Alu -8 141 1 4 1384 1832 174 67 37 chr4 104807090 104807491 -50822629 + MTC LTR MaLR 1 413 -8 4 1384 25 51 0 0 chr4 104808045 104808084 -50822036 + AT_rich Low_complexity Low_complexity 1 39 0 4 1384 409 269 107 73 chr4 104808405 104808694 -50821426 - ORR1E LTR MaLR -9 350 52 4 1384 396 0 0 0 chr4 104809182 104809226 -50820894 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1384 801 268 0 0 chr4 104809504 104809687 -50820433 + B3 SINE B2 14 196 -20 4 1384 2996 138 53 43 chr4 104809687 104810249 -50819871 + RMER15 LTR ERVL 1 568 -7 5 1384 1364 89 10 10 chr4 104810577 104810769 -50819351 + B2_Mm1t SINE B2 2 193 0 5 1384 463 275 0 0 chr4 104811376 104811485 -50818635 - RSINE1 SINE B4 -9 156 48 5 1384 498 240 65 59 chr4 104811788 104811974 -50818146 - MLT2D LTR ERVL -225 189 3 5 1384 550 285 82 15 chr4 104812450 104812646 -50817474 + LTR41B LTR ERVL 548 756 -2 5 1384 643 251 272 10 chr4 104812665 104812955 -50817165 + ORR1D2 LTR MaLR 5 370 0 5 1384 255 382 72 7 chr4 104813263 104813416 -50816704 + LTR41B LTR ERVL 402 564 -194 5 1384 1012 206 43 14 chr4 104814420 104814627 -50815493 + B3 SINE B2 4 216 0 5 1384 1302 53 35 56 chr4 104815423 104815537 -50814583 - B2_Mm2 SINE B2 -1 194 84 5 1384 2662 108 30 13 chr4 104815537 104815931 -50814189 - RLTR44A LTR ERVK -4 401 1 5 1384 1302 53 35 56 chr4 104815931 104816014 -50814106 - B2_Mm2 SINE B2 -112 83 1 5 1384 22 35 0 0 chr4 104816152 104816181 -50813939 + AT_rich Low_complexity Low_complexity 1 29 0 5 1384 601 226 14 42 chr4 104816512 104816655 -50813465 - B1_Mur4 SINE Alu -11 139 1 5 1384 296 276 27 54 chr4 104817054 104817165 -50812955 + PB1D10 SINE Alu 2 109 -8 5 1384 2437 154 138 18 chr4 104817268 104817769 -50812351 - RMER4B LTR ERVK -8 577 17 5 1384 228 35 0 0 chr4 104818193 104818222 -50811898 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1384 187 207 30 139 chr4 104818451 104818552 -50811568 - MIR SINE MIR -116 152 63 5 1384 504 319 140 34 chr4 104818748 104819192 -50810928 + L2 LINE L2 2387 2877 -542 5 1384 574 286 77 26 chr4 104819200 104819490 -50810630 + L1MB8 LINE L1 5702 5998 -176 5 1384 434 157 0 12 chr4 104819536 104819620 -50810500 + G-rich Low_complexity Low_complexity 4 86 0 5 1384 274 269 29 38 chr4 104819942 104820090 -50810030 + L1_Mus3 LINE L1 6535 6637 -1 5 1384 270 261 15 0 chr4 104820799 104820864 -50809256 - ID2 SINE ID -17 66 1 5 1384 983 249 9 45 chr4 104821053 104821276 -50808844 + B3 SINE B2 2 216 0 5 1384 648 136 0 0 chr4 104821374 104821499 -50808621 + (TG)n Simple_repeat Simple_repeat 1 125 0 5 1384 351 281 130 9 chr4 104821896 104822126 -50807994 + L1M5 LINE L1 4926 5183 -963 5 1384 771 322 42 36 chr4 104822132 104822464 -50807656 + MER58B DNA MER1_type 7 340 -1 5 1384 560 274 75 9 chr4 104822518 104822728 -50807392 + L1M5 LINE L1 5287 5501 -663 5 1384 1344 105 16 0 chr4 104822931 104823122 -50806998 + B2_Mm2 SINE B2 2 195 0 5 1384 1186 42 0 7 chr4 104823202 104823347 -50806773 + B1_Mm SINE Alu 3 146 -1 5 1384 219 232 122 31 chr4 104824269 104824367 -50805753 + MIR SINE MIR 44 150 -112 5 1384 222 306 15 172 chr4 104824428 104824562 -50805558 + L2a LINE L2 3312 3424 -2 5 1384 1075 49 0 7 chr4 104825367 104825511 -50804609 - B1_Mus1 SINE Alu 0 148 6 5 1384 915 197 26 11 chr4 104828319 104828509 -50801611 + B3 SINE B2 1 193 -23 5 1384 684 141 0 79 chr4 104828573 104828712 -50801408 + B1_Mur2 SINE Alu 21 148 -1 5 1384 1101 80 0 0 chr4 104829298 104829436 -50800684 - B1_Mus1 SINE Alu -9 139 2 5 1384 23 33 0 0 chr4 104829664 104829694 -50800426 + AT_rich Low_complexity Low_complexity 1 30 0 5 1384 198 0 0 0 chr4 104829778 104829800 -50800320 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1384 210 37 0 0 chr4 104829997 104830024 -50800096 + (GGA)n Simple_repeat Simple_repeat 3 29 0 5 1384 190 143 0 28 chr4 104831092 104831128 -50798992 - MIRb SINE MIR -7 261 227 5 1384 198 167 0 0 chr4 104831100 104831136 -50798984 - L2c LINE L2 -18 3369 3334 5 1384 309 219 114 0 chr4 104831476 104831581 -50798539 + MIR3 SINE MIR 66 182 -26 5 1384 237 267 142 22 chr4 104834053 104834187 -50795933 + MIR3 SINE MIR 44 193 -15 5 1384 216 217 0 21 chr4 104834615 104834662 -50795458 + CT-rich Low_complexity Low_complexity 3 48 0 5 1384 227 282 39 79 chr4 104835381 104835508 -50794612 + MIRb SINE MIR 90 211 -57 5 1384 495 87 0 0 chr4 104835630 104835699 -50794421 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 5 1384 1152 35 43 0 chr4 104837049 104837190 -50792930 - B1_Mus1 SINE Alu 0 148 2 5 1384 215 0 67 0 chr4 104838739 104838769 -50791351 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 5 1384 1199 68 0 0 chr4 104838985 104839133 -50790987 + B1_Mus1 SINE Alu 1 148 0 5 1384 246 284 0 22 chr4 104839149 104839239 -50790881 - L1MB7 LINE L1 -6 6172 6085 5 1384 310 213 0 21 chr4 104839360 104839456 -50790664 + CT-rich Low_complexity Low_complexity 1 94 0 5 1384 977 240 115 17 chr4 104839458 104839746 -50790374 - L1MB7 LINE L1 -319 5865 5550 5 1384 236 324 128 20 chr4 104839802 104839950 -50790170 - Tigger12 DNA MER2_type -1647 312 149 5 1384 251 344 112 43 chr4 104840499 104840730 -50789390 - MIR3 SINE MIR -14 254 4 5 1384 730 217 87 91 chr4 104840981 104841189 -50788931 + B3 SINE B2 3 209 -7 5 1384 353 258 21 43 chr4 104843009 104843102 -50787018 - MIRb SINE MIR -16 252 162 5 1384 183 42 0 0 chr4 104843120 104843144 -50786976 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1384 231 36 0 0 chr4 104844769 104844797 -50785323 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1384 306 73 0 0 chr4 104845405 104845446 -50784674 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 5 1384 262 211 39 0 chr4 104845446 104845498 -50784622 - ID4_ SINE ID 0 83 30 5 1384 260 309 20 50 chr4 104845502 104845601 -50784519 + MIR SINE MIR 16 111 -97 5 1384 1176 68 0 7 chr4 104846025 104846173 -50783947 - B1_Mus2 SINE Alu 0 147 1 5 1384 207 0 0 0 chr4 104846319 104846342 -50783778 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1384 186 71 0 0 chr4 104846665 104846693 -50783427 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1384 1143 88 7 0 chr4 104846694 104846841 -50783279 - B1_Mus1 SINE Alu 0 148 1 5 1384 251 276 66 0 chr4 104847329 104847405 -50782715 + MIRb SINE MIR 112 192 -76 5 1384 185 0 0 39 chr4 104847898 104847924 -50782196 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 5 1384 222 118 0 0 chr4 104848822 104848856 -50781264 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1384 453 255 189 60 chr4 104850140 104850357 -50779763 - MLT1B LTR MaLR -144 246 2 5 1384 254 340 0 21 chr4 104850767 104850863 -50779257 + C-rich Low_complexity Low_complexity 1 94 0 5 1384 189 306 84 63 chr4 104852687 104852830 -50777290 - MIR3 SINE MIR -44 164 19 5 1384 206 196 43 0 chr4 104853093 104853139 -50776981 + MIRm SINE MIR 227 274 -2 5 1384 275 155 241 0 chr4 104853305 104853363 -50776757 + ID4 SINE ID 2 73 -10 5 1384 201 113 55 36 chr4 104853376 104853431 -50776689 + GA-rich Low_complexity Low_complexity 2 57 0 5 1384 243 79 0 0 chr4 104854787 104854825 -50775295 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1384 360 0 0 0 chr4 104854920 104854960 -50775160 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1384 194 250 14 86 chr4 104856784 104856854 -50773266 + L2c LINE L2 3271 3335 -52 5 21 397 269 86 20 chr4 104857517 104857649 -50772471 - MIRb SINE MIR -105 163 20 5 1385 180 0 0 0 chr4 104857718 104857738 -50772382 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 5 1385 270 333 123 8 chr4 104859090 104859220 -50770900 - MER102b DNA MER1_type -193 148 4 5 1385 862 228 39 15 chr4 104860070 104860275 -50769845 + B3 SINE B2 1 210 -6 5 1385 386 226 117 42 chr4 104861013 104861133 -50768987 + RSINE1 SINE B4 16 144 -21 5 1385 191 36 36 0 chr4 104861172 104861200 -50768920 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 1385 218 279 0 32 chr4 104861289 104861352 -50768768 + ID SINE ID 19 79 -145 5 1385 201 275 57 14 chr4 104862298 104862368 -50767752 + MIR SINE MIR 90 162 -100 5 1385 226 276 54 137 chr4 104863093 104863261 -50766859 + LTR79 LTR ERVL 79 232 -295 5 1385 369 0 0 0 chr4 104864744 104864785 -50765335 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1385 342 292 65 19 chr4 104864787 104864895 -50765225 + L2c LINE L2 3274 3386 -1 5 1385 225 0 0 0 chr4 104865697 104865722 -50764398 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1385 21 0 0 0 chr4 104865838 104865859 -50764261 + AT_rich Low_complexity Low_complexity 1 21 0 5 1385 513 47 0 0 chr4 104866258 104866322 -50763798 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1385 649 173 0 0 chr4 104866392 104866496 -50763624 + PB1D9 SINE Alu 1 104 -16 5 1385 1878 155 148 11 chr4 104868213 104868579 -50761541 - MTD LTR MaLR -3 416 1 5 1385 23 0 0 0 chr4 104869344 104869367 -50760753 + GC_rich Low_complexity Low_complexity 1 23 0 5 1385 234 0 0 0 chr4 104869373 104869399 -50760721 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1385 30 0 0 0 chr4 104869500 104869530 -50760590 + AT_rich Low_complexity Low_complexity 1 30 0 5 1385 239 262 77 86 chr4 104869954 104870071 -50760049 + MIR SINE MIR 118 233 -29 5 1385 414 276 67 25 chr4 104870485 104870604 -50759516 + RSINE1 SINE B4 1 124 -41 5 1385 275 279 46 105 chr4 104870843 104870995 -50759125 + MIR SINE MIR 114 256 -6 5 1385 201 74 0 0 chr4 104871223 104871250 -50758870 + (CCTG)n Simple_repeat Simple_repeat 3 29 0 5 1385 1484 43 43 0 chr4 104872295 104872480 -50757640 - B2_Mm1t SINE B2 0 193 1 5 1385 408 293 62 62 chr4 104874050 104874228 -50755892 - MIRb SINE MIR -64 204 27 5 1385 227 104 0 20 chr4 104874284 104874333 -50755787 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1385 317 155 0 33 chr4 104876620 104876680 -50753440 + RLTR11A LTR ERVK 7 64 -464 5 1385 328 303 88 34 chr4 104876867 104877014 -50753106 + MIRc SINE MIR 97 251 -17 6 1385 300 154 0 0 chr4 104877180 104877232 -50752888 + (TGG)n Simple_repeat Simple_repeat 3 54 0 6 1385 213 39 0 0 chr4 104877356 104877382 -50752738 + (GAA)n Simple_repeat Simple_repeat 2 27 0 6 1385 300 283 64 28 chr4 104877411 104877520 -50752600 - MIRb SINE MIR -47 221 109 6 1385 523 219 9 17 chr4 104880183 104880299 -50749821 - PB1D10 SINE Alu 0 117 3 6 1385 219 312 98 43 chr4 104880461 104880625 -50749495 - MIRb SINE MIR -50 218 46 6 1385 324 339 0 69 chr4 104881473 104881603 -50748517 - L2c LINE L2 -26 3361 3241 6 1385 262 243 53 26 chr4 104881670 104881746 -50748374 - L2c LINE L2 -52 3335 3258 6 1385 294 333 103 90 chr4 104882358 104882503 -50747617 - RSINE1 SINE B4 -15 150 4 6 1385 239 253 172 0 chr4 104884581 104884665 -50745455 + MIR SINE MIR 68 170 -98 6 1385 263 333 11 32 chr4 104885321 104885414 -50744706 - MIRm SINE MIR -5 271 181 6 1385 194 267 113 47 chr4 104885710 104885816 -50744304 + L2a LINE L2 3114 3226 -200 6 1385 194 210 127 16 chr4 104886315 104886378 -50743742 - L2b LINE L2 -1 3374 3305 6 1385 393 22 0 0 chr4 104886671 104886717 -50743403 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1385 231 36 0 0 chr4 104886775 104886803 -50743317 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1385 255 170 0 0 chr4 104888065 104888112 -50742008 + (CTG)n Simple_repeat Simple_repeat 1 47 0 6 1385 1043 83 0 0 chr4 104889082 104889215 -50740905 - B1_Mus1 SINE Alu -14 134 2 6 1385 218 324 0 27 chr4 104891638 104891711 -50738409 - MIRb SINE MIR -15 253 183 6 1385 270 0 0 0 chr4 104893070 104893100 -50737020 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1385 297 0 0 0 chr4 104893106 104893139 -50736981 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1385 209 260 280 0 chr4 104893638 104893738 -50736382 - MIR3 SINE MIR -73 135 8 6 1385 853 164 0 41 chr4 104894564 104894710 -50735410 - B1F2 SINE Alu -2 147 8 6 1385 559 282 178 0 chr4 104895151 104895353 -50734767 - MLT1D LTR MaLR 0 505 268 6 1385 222 372 32 16 chr4 104895599 104895722 -50734398 + L2c LINE L2 3253 3377 -10 6 1385 225 0 0 0 chr4 104896364 104896389 -50733731 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 1385 549 0 0 0 chr4 104897558 104897619 -50732501 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 1385 889 215 99 0 chr4 104897638 104897829 -50732291 - B3 SINE B2 -5 211 2 6 1385 207 0 0 0 chr4 104897832 104897855 -50732265 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1385 192 298 17 17 chr4 104898353 104898411 -50731709 - L2c LINE L2 -60 3327 3270 6 1385 229 226 19 0 chr4 104899396 104899449 -50730671 + (TATG)n Simple_repeat Simple_repeat 2 55 0 6 1385 204 97 0 0 chr4 104899449 104899480 -50730640 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1385 365 337 19 37 chr4 104899480 104899588 -50730532 - PB1D10 SINE Alu -11 106 1 6 1385 286 370 39 58 chr4 104900450 104900708 -50729412 + L2c LINE L2 2946 3198 -189 6 1385 423 333 111 0 chr4 104900740 104900884 -50729236 + RSINE1 SINE B4 2 161 -4 6 1385 273 292 68 122 chr4 104900935 104901083 -50729037 + L2c LINE L2 3244 3383 -4 6 1385 1486 58 10 16 chr4 104901920 104902114 -50728006 + B2_Mm2 SINE B2 1 193 -2 6 1385 431 18 18 0 chr4 104902477 104902533 -50727587 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1385 217 103 0 49 chr4 104902540 104902581 -50727539 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 1385 21 0 0 0 chr4 104903741 104903762 -50726358 + AT_rich Low_complexity Low_complexity 1 21 0 6 1385 198 0 0 0 chr4 104904053 104904075 -50726045 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1385 31 44 0 0 chr4 104904940 104904985 -50725135 + AT_rich Low_complexity Low_complexity 1 45 0 6 1385 195 69 0 0 chr4 104905098 104905127 -50724993 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1385 292 247 12 105 chr4 104905991 104906088 -50724032 - MLT1E2 LTR MaLR 0 505 430 6 1385 306 229 93 107 chr4 104906150 104906328 -50723792 - MLT1E2 LTR MaLR -290 215 43 6 1385 3478 28 5 0 chr4 104906399 104906792 -50723328 - MTA_Mm LTR MaLR 0 396 2 6 1385 1395 75 42 11 chr4 104906885 104907074 -50723046 - B2_Mm2 SINE B2 0 195 1 6 1385 355 387 7 0 chr4 104907413 104907568 -50722552 + MER5A1 DNA MER1_type 1 156 -10 6 1385 221 314 93 0 chr4 104908094 104908180 -50721940 - MIRm SINE MIR -127 149 56 6 1385 198 0 0 0 chr4 104908579 104908601 -50721519 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 6 1385 316 262 37 67 chr4 104908604 104908725 -50721395 - L1MEf LINE L1 -4137 2063 1946 6 1385 1214 54 0 0 chr4 104908725 104908872 -50721248 - B1_Mus2 SINE Alu 0 147 1 6 1385 316 262 37 67 chr4 104908872 104908885 -50721235 - L1MEf LINE L1 -4255 1945 1933 6 1385 702 35 0 0 chr4 104909813 104909898 -50720222 + (TC)n Simple_repeat Simple_repeat 1 85 0 6 1385 228 312 0 38 chr4 104910149 104910229 -50719891 + RMER6B LTR ERVK 368 444 -17 6 1385 230 234 88 38 chr4 104910786 104910866 -50719254 + Tigger7 DNA MER2_type 1723 1806 -685 6 1385 212 0 0 35 chr4 104911509 104911538 -50718582 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1385 695 182 28 35 chr4 104911538 104911680 -50718440 - B1_Mur4 SINE Alu -9 141 1 6 1385 302 317 68 96 chr4 104911950 104912170 -50717950 + B4 SINE B4 2 215 -77 6 1385 232 193 114 0 chr4 104912490 104912578 -50717542 + RMER17B LTR ERVK 348 445 -513 6 1385 232 148 33 0 chr4 104912634 104912695 -50717425 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1385 529 114 0 25 chr4 104912745 104912826 -50717294 + MTC LTR MaLR 1 79 -342 6 1385 2698 221 81 83 chr4 104912826 104913786 -50716334 + RMER17B LTR ERVK 1 958 0 6 1385 831 191 27 55 chr4 104913791 104913974 -50716146 + MTC LTR MaLR 244 421 0 6 1385 26 0 0 0 chr4 104913992 104914018 -50716102 + AT_rich Low_complexity Low_complexity 1 26 0 6 1385 184 333 81 50 chr4 104914872 104915033 -50715087 + L2c LINE L2 2996 3161 -226 6 1385 1561 216 35 61 chr4 104915045 104915469 -50714651 + MTD LTR MaLR 4 416 -3 6 1385 854 280 61 0 chr4 104915469 104915683 -50714437 + B4A SINE B4 48 274 -18 6 1385 2355 78 31 62 chr4 104915710 104916067 -50714053 + ORR1A1 LTR MaLR 1 346 0 6 1385 1154 162 70 23 chr4 104916117 104916332 -50713788 + URR1B DNA MER1_type 1 225 0 6 1385 371 283 37 19 chr4 104916484 104916592 -50713528 + MER21B LTR ERV1 278 387 -476 6 1385 719 266 105 26 chr4 104916595 104916861 -50713259 + MER21B LTR ERV1 498 784 -79 6 1385 198 303 45 0 chr4 104917379 104917445 -50712675 - L2 LINE L2 -1613 1806 1738 6 1385 271 364 24 16 chr4 104918767 104918890 -50711230 - MIRc SINE MIR -106 162 39 6 1385 264 345 83 15 chr4 104919104 104919270 -50710850 - MIR3 SINE MIR -12 196 16 6 1385 23 0 0 0 chr4 104919322 104919345 -50710775 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 368 125 0 15 chr4 104919370 104919435 -50710685 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 1385 441 0 0 0 chr4 104919435 104919484 -50710636 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1385 208 205 97 9 chr4 104919734 104919807 -50710313 - MIR SINE MIR -68 140 64 6 1385 297 125 44 22 chr4 104920114 104920204 -50709916 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1385 197 274 79 16 chr4 104920273 104920336 -50709784 - L3 LINE CR1 -304 4185 4119 6 1385 286 175 84 36 chr4 104920917 104921000 -50709120 + MIRc SINE MIR 54 140 -128 6 1385 404 271 62 0 chr4 104921239 104921335 -50708785 + B1_Mur1 SINE Alu 13 114 -35 6 1385 324 0 0 0 chr4 104921363 104921399 -50708721 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1385 250 306 5 41 chr4 104921868 104922011 -50708109 + MLT1A0 LTR MaLR 269 408 0 6 1385 935 124 0 40 chr4 104923393 104923544 -50706576 - B1_Mur4 SINE Alu 0 150 6 6 1385 276 281 177 76 chr4 104923548 104923706 -50706414 - MLT1J LTR MaLR -222 290 117 6 1385 224 311 33 16 chr4 104924278 104924399 -50705721 + CT-rich Low_complexity Low_complexity 3 125 0 6 1385 249 209 0 0 chr4 104925131 104925198 -50704922 + GA-rich Low_complexity Low_complexity 4 70 0 6 1385 183 337 100 11 chr4 104925293 104925383 -50704737 - MIRm SINE MIR -134 142 45 6 1385 307 60 0 39 chr4 104926010 104926062 -50704058 + (CCCCCT)n Simple_repeat Simple_repeat 3 52 0 6 1385 358 279 70 99 chr4 104927146 104927317 -50702803 + Arthur1A DNA Tip100 2 167 -10 6 1385 488 347 83 23 chr4 104927468 104927769 -50702351 + MLT1B LTR MaLR 52 370 -20 6 1385 306 0 0 0 chr4 104928118 104928152 -50701968 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1385 718 216 7 7 chr4 104928607 104928742 -50701378 - B1_Mur1 SINE Alu -2 147 13 6 1385 300 322 78 7 chr4 104928766 104928912 -50701208 + MIR3 SINE MIR 52 204 -4 6 1385 403 270 75 56 chr4 104929040 104929201 -50700919 - MIR3 SINE MIR -5 203 40 6 1385 1973 140 12 58 chr4 104929346 104929688 -50700432 - ORR1A4 LTR MaLR 0 329 4 6 1385 592 216 6 13 chr4 104929770 104929929 -50700191 + (TATG)n Simple_repeat Simple_repeat 3 160 0 6 1385 1430 68 20 26 chr4 104929994 104930189 -50699931 - B2_Mm2 SINE B2 0 195 2 6 1385 264 308 64 0 chr4 104930189 104930267 -50699853 + L2c LINE L2 3305 3387 0 6 1385 387 0 0 0 chr4 104931857 104931900 -50698220 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 6 1385 955 225 16 5 chr4 104932677 104932865 -50697255 - ID_B1 SINE B4 -32 192 3 6 1385 312 297 44 33 chr4 104934037 104934203 -50695917 + MIR SINE MIR 10 183 -93 6 1385 24 85 0 0 chr4 104934430 104934489 -50695631 + AT_rich Low_complexity Low_complexity 1 59 0 6 1385 29 0 0 0 chr4 104934570 104934599 -50695521 + AT_rich Low_complexity Low_complexity 1 29 0 6 1385 1068 64 50 0 chr4 104934599 104934739 -50695381 - B1_Mus2 SINE Alu 0 147 1 7 1385 226 223 21 88 chr4 104935860 104936052 -50694068 + RMER17A LTR ERVK 288 466 -285 7 1385 258 268 35 35 chr4 104935995 104936080 -50694040 - PB1D7 SINE Alu -17 103 19 7 1385 257 347 92 31 chr4 104936570 104936766 -50693354 - MLT1K LTR MaLR -135 460 253 7 1385 207 260 20 0 chr4 104936983 104937033 -50693087 - MIRm SINE MIR -103 165 115 7 1385 351 0 0 0 chr4 104937504 104937543 -50692577 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1385 444 284 48 28 chr4 104937545 104937690 -50692430 - RSINE1 SINE B4 -16 149 2 7 1385 316 328 74 7 chr4 104937929 104938007 -50692113 + B4 SINE B4 2 88 -204 7 1385 305 302 71 20 chr4 104938007 104938105 -50692015 + B1F2 SINE Alu 1 103 -46 7 1385 342 0 0 0 chr4 104938743 104938781 -50691339 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1385 300 282 45 61 chr4 104939481 104939613 -50690507 + MLT1A1 LTR MaLR 278 407 -1 7 1385 2152 155 89 23 chr4 104939712 104940107 -50690013 - MTC LTR MaLR 0 421 1 7 1385 207 0 0 0 chr4 104940280 104940303 -50689817 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1385 290 310 0 0 chr4 104940316 104940429 -50689691 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 1385 231 206 15 30 chr4 104940430 104940565 -50689555 + (TCTG)n Simple_repeat Simple_repeat 4 136 0 7 1385 393 256 23 17 chr4 104940597 104940772 -50689348 + (TCTG)n Simple_repeat Simple_repeat 4 179 0 7 1385 214 205 24 0 chr4 104940773 104940856 -50689264 + (TA)n Simple_repeat Simple_repeat 2 86 0 7 1385 231 281 137 61 chr4 104940880 104940914 -50689206 - B3 SINE B2 -1 215 4 7 1385 520 291 0 31 chr4 104940914 104941077 -50689043 - RSINE1 SINE B4 -3 162 5 7 1385 219 36 0 0 chr4 104941232 104941260 -50688860 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1385 1282 20 0 0 chr4 104941992 104942139 -50687981 + B1_Mus2 SINE Alu 1 147 0 7 1385 288 0 0 0 chr4 104942139 104942171 -50687949 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1385 2117 31 4 19 chr4 104942388 104942671 -50687449 - L1Md_F2 LINE L1 0 6582 6321 7 1385 1173 36 12 12 chr4 104942681 104942849 -50687271 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 7 1385 406 292 19 0 chr4 104943026 104943132 -50686988 + MIRb SINE MIR 67 174 -94 7 1385 271 362 0 17 chr4 104943325 104943443 -50686677 + PB1D10 SINE Alu 2 117 0 7 1385 1187 108 48 16 chr4 104943455 104943644 -50686476 + B2_Mm2 SINE B2 1 195 0 7 1385 182 337 47 0 chr4 104944340 104944426 -50685694 + MIRb SINE MIR 103 192 -76 7 1385 272 229 43 0 chr4 104944442 104944512 -50685608 - MADE2 DNA Mariner 0 80 8 7 1385 569 302 83 7 chr4 104944662 104944847 -50685273 + MTD LTR MaLR 12 200 -219 7 1385 1262 28 7 0 chr4 104944847 104944992 -50685128 + B1_Mus2 SINE Alu 2 147 0 7 1385 403 347 21 70 chr4 104944992 104945048 -50685072 + MTD LTR MaLR 192 241 -166 7 1385 702 135 312 0 chr4 104945091 104945261 -50684859 + MTD LTR MaLR 197 419 0 7 1385 471 225 121 27 chr4 104945261 104945422 -50684698 + MTD LTR MaLR 206 419 0 7 1385 183 254 35 35 chr4 104945682 104945739 -50684381 - MIR SINE MIR -116 92 36 7 1385 705 230 71 13 chr4 104946940 104947094 -50683026 - RSINE1 SINE B4 0 165 3 7 1385 504 0 0 0 chr4 104947732 104947788 -50682332 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1385 217 271 54 34 chr4 104947902 104947985 -50682135 - MIRc SINE MIR -104 158 78 7 1385 213 65 0 0 chr4 104949072 104949103 -50681017 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1385 320 252 26 0 chr4 104949236 104949326 -50680794 - MIRb SINE MIR -167 109 16 7 1385 256 318 45 36 chr4 104949621 104949732 -50680388 + PB1 SINE Alu 14 125 -2 7 1385 352 281 0 12 chr4 104949744 104949827 -50680293 + ID4 SINE ID 2 83 0 7 1385 246 192 0 0 chr4 104950730 104950782 -50679338 + GA-rich Low_complexity Low_complexity 4 55 0 7 1385 1227 161 66 5 chr4 104951922 104952134 -50677986 + URR1A DNA MER1_type 2 226 0 7 1385 228 204 23 0 chr4 104952181 104952225 -50677895 + MLT1B LTR MaLR 140 184 -283 7 1385 335 257 67 29 chr4 104952224 104952328 -50677792 + PB1D9 SINE Alu 13 120 0 7 1385 412 250 70 0 chr4 104952386 104952486 -50677634 + MLT1B LTR MaLR 284 390 0 7 1385 423 0 0 0 chr4 104952848 104952895 -50677225 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 7 1385 661 125 223 0 chr4 104952895 104953007 -50677113 - B1_Mur4 SINE Alu -13 137 1 7 1385 540 0 0 0 chr4 104953016 104953076 -50677044 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 7 1385 185 245 61 0 chr4 104953188 104953237 -50676883 - L3 LINE CR1 -407 4082 4031 7 1385 28 48 0 0 chr4 104953525 104953567 -50676553 + AT_rich Low_complexity Low_complexity 1 42 0 7 1385 265 294 216 22 chr4 104953572 104953711 -50676409 - B3A SINE B2 -25 173 8 7 1385 201 231 0 0 chr4 104953803 104953855 -50676265 + (CAGCC)n Simple_repeat Simple_repeat 5 56 0 7 1385 218 311 62 28 chr4 104954850 104954966 -50675154 + MIRc SINE MIR 9 127 -149 7 1385 206 235 13 105 chr4 104955054 104955130 -50674990 - L2b LINE L2 0 3375 3307 7 1385 273 347 97 26 chr4 104955965 104956119 -50674001 - MIRb SINE MIR -96 172 8 7 1385 345 320 10 10 chr4 104957119 104957220 -50672900 - MER5A DNA MER1_type -2 187 87 7 1385 647 106 0 21 chr4 104957332 104957428 -50672692 - B2_Mm2 SINE B2 -99 96 3 7 1385 3482 33 0 0 chr4 104958469 104958865 -50671255 + MTA_Mm LTR MaLR 1 396 0 7 1385 187 365 33 56 chr4 104959470 104959560 -50670560 - MIR SINE MIR -93 115 28 7 1385 649 245 7 26 chr4 104959816 104959967 -50670153 - B1_Mur1 SINE Alu 0 149 2 7 1385 486 0 0 0 chr4 104960390 104960444 -50669676 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1385 268 276 150 87 chr4 104960587 104960714 -50669406 + MLT1J LTR MaLR 230 364 -148 7 1385 35 41 0 0 chr4 104960799 104960848 -50669272 + AT_rich Low_complexity Low_complexity 1 49 0 7 1385 253 299 26 0 chr4 104960982 104961059 -50669061 - B2_Mm2 SINE B2 -114 81 3 7 1385 318 321 25 0 chr4 104961125 104961206 -50668914 - ID_B1 SINE B4 -66 158 76 7 1385 459 0 0 0 chr4 104961369 104961420 -50668700 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1385 188 296 81 27 chr4 104962206 104962317 -50667803 - L2c LINE L2 -77 3310 3194 7 1385 428 299 25 56 chr4 104962364 104962562 -50667558 - MIRb SINE MIR -32 236 45 7 1385 281 244 17 6 chr4 104963152 104963329 -50666791 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1385 591 15 0 0 chr4 104963337 104963405 -50666715 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 7 1385 355 302 145 15 chr4 104963450 104963581 -50666539 - MIRm SINE MIR -125 151 4 7 1385 204 40 0 0 chr4 104963993 104964018 -50666102 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1385 243 287 155 31 chr4 104964233 104964330 -50665790 - MIRc SINE MIR -113 155 47 7 1385 21 0 0 0 chr4 104964776 104964797 -50665323 + AT_rich Low_complexity Low_complexity 1 21 0 7 1385 38660 30 1 0 chr4 104965114 104971985 -50658135 - L1Md_T LINE L1 0 6585 1 7 1385 209 203 63 63 chr4 104972127 104972190 -50657930 + MIRc SINE MIR 63 125 -143 7 1385 396 0 0 0 chr4 104972332 104972376 -50657744 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1385 744 285 114 57 chr4 104972690 104973383 -50656737 + L1MC3 LINE L1 5060 5808 -536 7 1385 859 149 7 7 chr4 104973383 104973518 -50656602 - B1_Mur4 SINE Alu -14 136 2 7 1385 744 298 123 75 chr4 104973518 104973699 -50656421 + L1MC3 LINE L1 5809 5983 -361 7 1385 960 89 168 19 chr4 104973758 104973919 -50656201 - B2_Mm1a SINE B2 -8 185 1 7 1385 747 169 191 0 chr4 104974058 104974236 -50655884 - B3 SINE B2 0 216 5 7 1385 241 240 0 145 chr4 104974275 104974300 -50655820 + L1MC3 LINE L1 6224 6248 -1537 7 1385 1117 97 43 49 chr4 104974300 104974484 -50655636 + B2_Mm2 SINE B2 3 185 -10 7 1385 241 240 0 145 chr4 104974484 104974575 -50655545 + L1MC3 LINE L1 6249 6323 -1462 7 1385 632 280 83 58 chr4 104974591 104974943 -50655177 + ORR1E LTR MaLR 1 379 0 7 1385 791 255 13 44 chr4 104974960 104975186 -50654934 + MTE-int LTR MaLR 59 277 -1303 7 1385 959 303 196 29 chr4 104975205 104975660 -50654460 + MTE-int LTR MaLR 376 906 -674 7 1385 367 304 119 5 chr4 104975660 104975845 -50654275 + L1MC3 LINE L1 6978 7183 -602 7 1385 819 112 0 0 chr4 104975846 104975971 -50654149 + (GGGAGA)n Simple_repeat Simple_repeat 6 130 0 7 1385 582 253 46 39 chr4 104976091 104976299 -50653821 - B1F1 SINE Alu -8 141 1 7 1385 1008 297 62 32 chr4 104976299 104976769 -50653351 + L1MC3 LINE L1 7287 7770 -15 7 1385 232 242 166 118 chr4 104977041 104977210 -50652910 - MIR SINE MIR 0 262 86 7 1385 871 173 14 12 chr4 104977260 104977682 -50652438 + GA-rich Low_complexity Low_complexity 1 422 0 7 1385 263 263 70 0 chr4 104977781 104977838 -50652282 - ID4 SINE ID -20 63 3 7 1385 1220 187 0 14 chr4 104977932 104978144 -50651976 - B3 SINE B2 -7 209 1 7 1385 601 250 21 63 chr4 104978235 104978474 -50651646 + L1MA5 LINE L1 6045 6273 -27 7 1385 725 22 11 0 chr4 104979727 104979818 -50650302 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 1385 213 137 274 0 chr4 104979876 104979927 -50650193 - B3A SINE B2 -133 65 1 7 1385 224 274 33 67 chr4 104979939 104980029 -50650091 - L2c LINE L2 -48 3339 3253 7 1385 468 0 0 0 chr4 104981840 104981892 -50648228 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1385 358 264 0 0 chr4 104982361 104982433 -50647687 - ID4_ SINE ID -10 73 2 7 1385 346 234 0 25 chr4 104982473 104982552 -50647568 - PB1D10 SINE Alu -40 77 1 7 1385 3285 47 66 0 chr4 104982605 104982803 -50647317 - RLTR10C LTR ERVK 0 436 233 7 1385 216 0 0 0 chr4 104982803 104982827 -50647293 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 1385 3285 47 66 0 chr4 104982827 104983037 -50647083 - RLTR10C LTR ERVK -204 232 2 7 1385 234 0 0 0 chr4 104983768 104983794 -50646326 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1385 826 289 122 10 chr4 104983843 104984227 -50645893 - Lx9 LINE L1 -19 7625 7199 7 1385 261 200 0 0 chr4 104984253 104984298 -50645822 - MIRb SINE MIR -186 82 38 7 1385 424 193 193 0 chr4 104984424 104984533 -50645587 - B1_Mur1 SINE Alu -17 132 3 7 1385 207 139 0 0 chr4 104984677 104984713 -50645407 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 7 1385 575 232 109 0 chr4 104984721 104984859 -50645261 - RSINE1 SINE B4 -10 155 3 8 1385 254 359 11 86 chr4 104984882 104985056 -50645064 + L2c LINE L2 3226 3386 -1 8 1385 212 329 12 48 chr4 104985157 104985240 -50644880 - ID4_ SINE ID 0 83 4 8 1385 186 225 0 48 chr4 104985528 104985570 -50644550 - L4 LINE RTE -287 1742 1703 8 1385 216 0 0 0 chr4 104985684 104985708 -50644412 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1385 648 253 62 11 chr4 104986810 104986986 -50643134 + B3 SINE B2 5 189 -27 8 1385 294 285 96 100 chr4 104987075 104987305 -50642815 + Charlie1a DNA MER1_type 316 544 -911 8 1385 446 114 13 0 chr4 104987305 104987384 -50642736 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 8 1385 254 333 43 0 chr4 104987390 104987483 -50642637 + ORR1E LTR MaLR 23 119 -240 8 1385 450 209 22 11 chr4 104987782 104987874 -50642246 - MLT1A1 LTR MaLR -314 94 2 8 1385 945 283 82 70 chr4 104987879 104988115 -50642005 + Charlie1a DNA MER1_type 928 1159 -296 8 1385 318 272 0 47 chr4 104988115 104988200 -50641920 + ID4 SINE ID 2 82 -1 8 1385 945 283 82 70 chr4 104988200 104988404 -50641716 + Charlie1a DNA MER1_type 1160 1373 -82 8 1385 243 125 0 0 chr4 104988452 104988492 -50641628 + (TATG)n Simple_repeat Simple_repeat 4 43 0 8 1385 597 229 25 0 chr4 104988500 104988622 -50641498 - RSINE1 SINE B4 -31 134 10 8 173 786 246 23 23 chr4 104988643 104988859 -50641261 - B3 SINE B2 0 216 1 8 1386 488 301 69 7 chr4 104988874 104989018 -50641102 - ID_B1 SINE B4 -7 217 65 8 1386 358 325 61 18 chr4 104989048 104989211 -50640909 + MIR SINE MIR 69 238 -24 8 1386 334 235 12 12 chr4 104989801 104989883 -50640237 - ID4 SINE ID -1 82 1 8 1386 3484 58 7 0 chr4 104990242 104990673 -50639447 - L1_Mus3 LINE L1 -6 6632 6199 8 1386 455 352 86 37 chr4 104990879 104991138 -50638982 - L1M5 LINE L1 -322 5802 5539 8 1386 234 159 109 16 chr4 104991138 104991202 -50638918 - ID4 SINE ID -11 72 3 8 1386 455 308 66 158 chr4 104991202 104991313 -50638807 - L1M5 LINE L1 -676 5566 5459 8 1386 1181 77 0 25 chr4 104992949 104993109 -50637011 + B2_Mm2 SINE B2 2 157 -38 8 1386 189 0 0 0 chr4 104993113 104993134 -50636986 + (CAA)n Simple_repeat Simple_repeat 2 22 0 8 1386 483 18 0 0 chr4 104994010 104994066 -50636054 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1386 279 0 0 0 chr4 104994430 104994461 -50635659 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1386 257 299 28 0 chr4 104994688 104994763 -50635357 - ID SINE ID -146 78 2 8 1386 421 316 59 15 chr4 104994829 104995122 -50634998 + MER57E2 LTR ERV1 2 359 -43 8 1386 488 258 136 8 chr4 104995150 104995275 -50634845 + B4A SINE B4 7 147 -145 8 1386 860 217 43 14 chr4 104996693 104996903 -50633217 + B3 SINE B2 1 216 0 8 1386 243 278 246 18 chr4 104997030 104997140 -50632980 - MER5A DNA MER1_type -53 136 2 8 1386 1308 86 11 5 chr4 104998783 104998971 -50631149 + B2_Mm1a SINE B2 2 190 -3 8 1386 186 163 0 0 chr4 104998971 104999008 -50631112 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 8 1386 188 100 0 24 chr4 104999012 104999053 -50631067 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 8 1386 191 250 14 56 chr4 104999090 104999162 -50630958 - MIR SINE MIR -68 194 126 8 1386 430 268 26 26 chr4 104999343 104999458 -50630662 - PB1D10 SINE Alu 0 117 3 8 1386 651 112 0 0 chr4 105000141 105000239 -50629881 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1386 313 286 125 33 chr4 105000644 105000796 -50629324 + Charlie19a DNA Charlie 65 230 -156 2 1386 204 245 0 0 chr4 105001803 105001852 -50628268 + (TAG)n Simple_repeat Simple_repeat 3 51 0 3 1386 191 301 9 0 chr4 105001945 105002024 -50628096 + MIRb SINE MIR 91 172 -96 4 1386 180 0 0 0 chr4 105002433 105002453 -50627667 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1386 313 277 36 0 chr4 105002847 105002930 -50627190 + B1F SINE Alu 6 91 -58 6 1386 2607 109 13 3 chr4 105004823 105005199 -50624921 - RLTR14 LTR ERV1 -2 380 1 7 1386 385 278 8 34 chr4 105005991 105006110 -50624010 - L1M2 LINE L1 -494 5818 5703 8 1386 252 286 129 0 chr4 105006110 105006250 -50623870 + L1MA7 LINE L1 6121 6278 -13 9 1386 327 289 18 111 chr4 105006506 105006677 -50623443 + ID_B1 SINE B4 3 157 -67 1 1386 315 314 57 24 chr4 105007169 105007293 -50622827 - MIRb SINE MIR -57 211 84 1 1386 300 91 0 0 chr4 105007755 105007799 -50622321 + (CATA)n Simple_repeat Simple_repeat 4 47 0 1 1386 810 161 11 6 chr4 105008260 105008435 -50621685 + CT-rich Low_complexity Low_complexity 4 179 0 1 1386 1387 129 4 43 chr4 105008762 105008996 -50621124 + URR1A DNA MER1_type 2 226 0 1 1386 435 38 0 0 chr4 105009717 105009770 -50620350 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1386 424 263 66 33 chr4 105009775 105009897 -50620223 - RSINE1 SINE B4 -36 129 4 1 1386 515 164 105 38 chr4 105009906 105010039 -50620081 - B1F2 SINE Alu -6 143 2 1 1386 441 0 0 0 chr4 105010064 105010113 -50620007 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1386 320 266 21 0 chr4 105010744 105010830 -50619290 - ID4 SINE ID -59 93 2 1 1386 473 168 174 8 chr4 105011121 105011253 -50618867 - Lx9 LINE L1 0 7644 7491 2 1386 479 211 0 6 chr4 105011254 105011421 -50618699 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 1386 5720 189 20 5 chr4 105011422 105012464 -50617656 - Lx9 LINE L1 -136 7508 6451 2 1386 788 165 156 30 chr4 105012513 105012757 -50617363 - RMER10A LTR ERVL -143 255 1 2 1386 629 250 91 122 chr4 105013179 105013466 -50616654 - B4 SINE B4 -12 280 3 2 1386 272 281 49 0 chr4 105015040 105015122 -50614998 + BC1_Mm scRNA scRNA 2 87 -65 2 1386 1306 300 75 29 chr4 105015170 105015643 -50614477 - Lx8 LINE L1 0 7473 6967 2 1386 221 0 35 0 chr4 105015643 105015672 -50614448 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1386 1306 300 75 29 chr4 105015672 105015813 -50614307 - Lx8 LINE L1 -507 6966 6831 2 1386 520 52 52 0 chr4 105015892 105015989 -50614131 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 1386 353 39 20 0 chr4 105016028 105016079 -50614041 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1386 214 345 32 43 chr4 105017352 105017446 -50612674 + L2b LINE L2 3257 3349 -26 2 1386 228 357 14 0 chr4 105018745 105018815 -50611305 + ID_B1 SINE B4 81 151 -73 2 1386 313 319 66 0 chr4 105018755 105018846 -50611274 + PB1D10 SINE Alu 11 107 -10 3 1386 363 23 0 0 chr4 105018846 105018890 -50611230 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1386 1146 68 0 0 chr4 105019781 105019927 -50610193 + B1_Mus2 SINE Alu 2 147 0 3 1386 180 0 0 0 chr4 105019927 105019947 -50610173 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1386 1071 136 65 0 chr4 105020030 105020199 -50609921 + B2_Mm2 SINE B2 2 181 -14 3 1386 353 60 15 66 chr4 105020266 105020371 -50609749 + B2_Mm2 SINE B2 47 181 -14 3 1386 205 222 37 0 chr4 105021051 105021105 -50609015 - MIRc SINE MIR -129 139 84 3 1386 234 23 45 23 chr4 105021145 105021189 -50608931 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 1386 1203 29 0 0 chr4 105021189 105021328 -50608792 - B1_Mm SINE Alu -8 139 1 3 1386 232 337 45 40 chr4 105022504 105022680 -50607440 + MIRb SINE MIR 7 183 -85 3 1386 249 262 90 78 chr4 105022701 105022895 -50607225 - MIR SINE MIR -14 248 43 4 1386 450 132 0 0 chr4 105023306 105023382 -50606738 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1386 279 311 124 30 chr4 105023463 105023632 -50606488 - MIRb SINE MIR -46 222 38 4 1386 999 147 0 0 chr4 105023645 105023822 -50606298 + (TTCTC)n Simple_repeat Simple_repeat 1 177 0 4 1386 342 115 0 0 chr4 105023823 105023875 -50606245 + (TCCCC)n Simple_repeat Simple_repeat 3 54 0 4 1386 273 380 6 71 chr4 105024579 105024749 -50605371 + MIRb SINE MIR 18 176 -92 4 1386 195 42 0 0 chr4 105024749 105024773 -50605347 + (CAG)n Simple_repeat Simple_repeat 1 24 0 4 1386 339 25 0 0 chr4 105026544 105026584 -50603536 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1386 353 286 138 30 chr4 105026642 105026873 -50603247 + L1M5 LINE L1 5255 5510 -663 4 1386 714 280 48 40 chr4 105026949 105027176 -50602944 - MTE2a LTR MaLR -133 246 18 4 1386 180 207 207 0 chr4 105028060 105028142 -50601978 + MIRb SINE MIR 16 114 -154 5 1386 229 220 0 0 chr4 105028816 105028866 -50601254 - PB1D10 SINE Alu -49 68 19 5 1386 217 200 73 0 chr4 105028824 105028879 -50601241 - ID_B1 SINE B4 -83 141 83 5 1386 812 186 6 0 chr4 105028927 105029099 -50601021 + GA-rich Low_complexity Low_complexity 1 173 0 5 1386 356 277 20 74 chr4 105029477 105029625 -50600495 + Charlie9 DNA MER1_type 3 142 -2615 5 1386 235 309 24 0 chr4 105029635 105029719 -50600401 + Charlie9 DNA MER1_type 2672 2757 0 5 1386 354 293 99 7 chr4 105029740 105029891 -50600229 + MER58A DNA MER1_type 45 209 -15 5 1386 33 66 0 0 chr4 105030864 105030925 -50599195 + AT_rich Low_complexity Low_complexity 1 61 0 5 1386 34 84 0 0 chr4 105031019 105031102 -50599018 + AT_rich Low_complexity Low_complexity 1 83 0 5 1386 323 60 0 20 chr4 105031837 105031888 -50598232 + (TTA)n Simple_repeat Simple_repeat 2 51 0 5 1386 355 292 0 20 chr4 105031895 105031993 -50598127 - PB1D10 SINE Alu -17 100 5 5 1386 2135 279 34 26 chr4 105032047 105032790 -50597330 + Lx7 LINE L1 6711 7469 -4 6 1386 648 299 73 12 chr4 105033108 105033355 -50596765 + MLT1G3 LTR MaLR 177 438 -157 6 1386 396 330 52 36 chr4 105034002 105034194 -50595926 + MIR SINE MIR 44 238 -24 6 1386 472 214 25 0 chr4 105034297 105034407 -50595713 - PB1D10 SINE Alu -3 117 3 6 1386 659 316 88 34 chr4 105035522 105035850 -50594270 + MLT1A0 LTR MaLR 4 349 -16 6 1386 232 226 0 95 chr4 105036568 105036705 -50593415 + (CCA)n Simple_repeat Simple_repeat 3 126 0 6 1386 237 344 30 46 chr4 105036951 105037082 -50593038 + MIRb SINE MIR 93 221 -47 6 1386 264 353 71 13 chr4 105037637 105037792 -50592328 - MLT1I LTR MaLR -50 361 198 6 1386 251 341 7 29 chr4 105038365 105038501 -50591619 - L2 LINE L2 -993 2426 2294 6 1386 485 303 53 58 chr4 105038660 105038951 -50591169 + L1ME3B LINE L1 5678 5970 -270 6 1386 252 0 0 0 chr4 105038951 105038979 -50591141 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1386 485 303 53 58 chr4 105038979 105039080 -50591040 + L1ME3B LINE L1 5971 6067 -173 6 1386 926 294 14 25 chr4 105039274 105039560 -50590560 - B4 SINE B4 0 292 10 7 1386 390 276 260 17 chr4 105040060 105040237 -50589883 + ID_B1 SINE B4 1 220 -4 7 1386 1549 44 16 0 chr4 105040244 105040427 -50589693 + B2_Mm2 SINE B2 2 187 -8 7 1386 290 262 24 0 chr4 105040445 105040529 -50589591 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 7 1386 701 185 29 15 chr4 105040688 105040825 -50589295 + B1F1 SINE Alu 11 149 0 7 1386 372 266 145 26 chr4 105041657 105042077 -50588043 - L1MEc LINE L1 -4152 2248 1779 7 1386 553 287 126 36 chr4 105042093 105042121 -50587999 + Lx9 LINE L1 6309 6335 -1309 7 1386 270 0 0 0 chr4 105042121 105042151 -50587969 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1386 553 287 126 36 chr4 105042151 105042400 -50587720 + Lx9 LINE L1 6336 6610 -1034 7 1386 496 182 9 0 chr4 105042538 105042648 -50587472 + Lx9 LINE L1 7527 7637 -7 7 1386 475 227 90 75 chr4 105042863 105043164 -50586956 + L1ME1 LINE L1 2224 2530 -3789 8 1386 1242 311 102 30 chr4 105043646 105044657 -50585463 + L1ME1 LINE L1 4440 5544 -775 8 1386 394 332 95 29 chr4 105044860 105045303 -50584817 + L1ME1 LINE L1 5557 6028 -324 8 1386 699 12 0 0 chr4 105046360 105046440 -50583680 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 8 1386 1460 139 11 31 chr4 105047620 105047880 -50582240 - MTC LTR MaLR -166 255 1 8 1386 707 201 14 7 chr4 105048388 105048533 -50581587 - B1_Mur4 SINE Alu -2 148 3 8 1386 624 62 0 0 chr4 105048980 105049061 -50581059 + (TA)n Simple_repeat Simple_repeat 1 81 0 8 1386 219 380 49 7 chr4 105050589 105050732 -50579388 + MIRc SINE MIR 2 150 -118 8 1386 939 219 44 0 chr4 105051179 105051384 -50578736 + B3 SINE B2 1 214 -2 8 1386 195 129 0 0 chr4 105051563 105051594 -50578526 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1386 268 281 91 10 chr4 105051725 105051854 -50578266 - MIRb SINE MIR -116 152 6 8 1386 302 231 51 13 chr4 105052231 105052310 -50577810 + ID4_ SINE ID 2 83 0 8 1386 234 284 14 0 chr4 105052370 105052444 -50577676 - MIR SINE MIR -113 149 75 9 1386 394 269 8 56 chr4 105054770 105054896 -50575224 + MLT2B4 LTR ERVL 27 146 -410 9 1386 1456 176 131 22 chr4 105054924 105055290 -50574830 - MTD LTR MaLR -11 408 3 9 1386 676 240 102 26 chr4 105055296 105055561 -50574559 + MLT2B4 LTR ERVL 230 514 -42 9 1386 706 166 13 0 chr4 105055563 105055714 -50574406 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 9 1386 374 353 20 0 chr4 105055879 105056032 -50574088 - MIRm SINE MIR -120 156 1 9 1386 293 68 0 22 chr4 105056100 105056145 -50573975 + (TTA)n Simple_repeat Simple_repeat 2 45 0 9 1386 675 304 13 9 chr4 105056757 105056989 -50573131 + L1ME1 LINE L1 5937 6169 -10 9 1386 350 331 48 14 chr4 105057578 105057725 -50572395 - MER117 DNA MER1_type -42 155 4 9 1386 215 289 0 100 chr4 105057885 105057985 -50572135 + MIRb SINE MIR 115 204 -64 9 1386 199 233 32 32 chr4 105058002 105058064 -50572056 - MIRb SINE MIR -31 237 176 9 1386 194 259 138 0 chr4 105058111 105058169 -50571951 - MIR SINE MIR -107 101 36 9 1386 2491 136 5 7 chr4 105058338 105058752 -50571368 + MTC LTR MaLR 1 413 -8 1 1386 192 380 13 0 chr4 105059224 105059303 -50570817 - MER5A DNA MER1_type -29 160 81 1 1386 333 315 53 39 chr4 105060137 105060345 -50569775 - MER121 Unknown Unknown -53 359 149 1 1386 271 321 28 67 chr4 105060548 105060728 -50569392 + B4A SINE B4 2 174 -118 1 1386 387 41 0 0 chr4 105060875 105060924 -50569196 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1386 899 163 45 198 chr4 105060983 105061297 -50568823 - RMER1A Other Other -10 1020 755 1 1386 273 316 18 0 chr4 105061387 105061501 -50568619 - L1MB3 LINE L1 -199 5984 5869 1 1386 794 229 20 15 chr4 105061712 105061916 -50568204 - B3 SINE B2 -11 205 1 1 1386 575 249 54 38 chr4 105061940 105061976 -50568144 - B3 SINE B2 0 216 180 1 1386 527 72 41 10 chr4 105061976 105062074 -50568046 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 1 1386 575 249 54 38 chr4 105062074 105062090 -50568030 - B3 SINE B2 -37 179 166 1 1386 615 27 0 0 chr4 105062090 105062163 -50567957 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1386 575 249 54 38 chr4 105062163 105062293 -50567827 - B3 SINE B2 -51 165 30 1 1386 395 167 143 20 chr4 105062299 105062397 -50567723 - PB1D9 SINE Alu -2 118 9 1 1386 373 318 61 85 chr4 105062460 105062920 -50567200 + L2 LINE L2 2364 2812 -607 1 1386 231 237 0 17 chr4 105063004 105063064 -50567056 - MER5A1 DNA MER1_type -7 159 101 1 1386 550 306 55 5 chr4 105063350 105063550 -50566570 + MER58A DNA MER1_type 15 224 0 1 1386 538 337 48 11 chr4 105064417 105064690 -50565430 - MLT1D LTR MaLR -15 490 208 1 1386 795 188 0 7 chr4 105064807 105064941 -50565179 + B1_Mur4 SINE Alu 6 138 -12 1 1386 468 0 0 0 chr4 105064941 105064993 -50565127 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1386 1993 288 173 26 chr4 105065466 105066337 -50563783 - Lx8 LINE L1 -6 7467 6469 1 1386 1459 221 65 11 chr4 105066367 105066555 -50563565 - ORR1D1 LTR MaLR -2 372 168 1 1386 405 0 0 0 chr4 105066555 105066600 -50563520 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1386 1459 221 65 11 chr4 105066600 105066764 -50563356 - ORR1D1 LTR MaLR -207 167 2 1 1386 232 242 30 10 chr4 105067337 105067437 -50562683 + (TA)n Simple_repeat Simple_repeat 1 102 0 1 1386 1765 167 102 5 chr4 105068675 105069049 -50561071 + MTD LTR MaLR 10 419 0 1 1386 354 23 0 0 chr4 105069519 105069562 -50560558 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1386 249 295 105 0 chr4 105070608 105070713 -50559407 - MIR SINE MIR -55 153 38 1 1386 440 263 127 0 chr4 105071543 105071661 -50558459 + RSINE1 SINE B4 4 136 -29 1 1386 255 159 0 0 chr4 105071711 105071755 -50558365 + RSINE1 SINE B4 76 119 -46 1 1386 477 0 0 0 chr4 105071760 105071813 -50558307 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1386 250 314 109 55 chr4 105071948 105072150 -50557970 + LTR78 LTR ERV1 241 453 -851 1 1386 271 236 0 14 chr4 105072151 105072224 -50557896 - L1M2 LINE L1 -467 5845 5774 1 1386 355 144 41 10 chr4 105072237 105072335 -50557785 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1386 712 208 79 37 chr4 105072391 105072408 -50557712 - B3A SINE B2 0 198 184 1 1386 246 62 0 0 chr4 105072408 105072440 -50557680 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1386 198 91 0 0 chr4 105072440 105072473 -50557647 + (CAGT)n Simple_repeat Simple_repeat 1 33 0 1 1386 712 208 79 37 chr4 105072473 105072644 -50557476 - B3A SINE B2 -15 183 2 1 1386 482 287 65 27 chr4 105072648 105072834 -50557286 - L1M2 LINE L1 -557 5734 5542 1 1386 358 277 149 71 chr4 105073347 105073615 -50556505 + B4A SINE B4 2 290 -2 1 1386 206 236 0 35 chr4 105073622 105073679 -50556441 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1386 450 0 0 0 chr4 105073784 105073834 -50556286 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1386 214 307 11 54 chr4 105074174 105074267 -50555853 - MIR SINE MIR -20 242 154 1 1386 665 98 9 0 chr4 105075011 105075123 -50554997 + (TGG)n Simple_repeat Simple_repeat 2 114 0 1 1386 266 318 79 61 chr4 105075160 105075274 -50554846 - ID_B1 SINE B4 -15 209 94 1 1386 222 185 12 24 chr4 105076117 105076200 -50553920 + G-rich Low_complexity Low_complexity 5 86 0 1 1386 214 309 0 24 chr4 105076412 105076495 -50553625 - MIRc SINE MIR -124 144 64 1 1386 243 79 0 0 chr4 105077165 105077203 -50552917 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1386 331 349 49 44 chr4 105080126 105080330 -50549790 - L2b LINE L2 -38 3337 3133 1 1386 407 309 129 43 chr4 105080833 105081066 -50549054 + LTR33 LTR ERVL 127 379 -136 1 1386 887 96 0 7 chr4 105081437 105081574 -50548546 + (TTCC)n Simple_repeat Simple_repeat 4 139 0 1 1386 316 233 11 32 chr4 105081685 105081778 -50548342 + MTEb LTR MaLR 289 379 0 1 1386 184 221 129 29 chr4 105082015 105082085 -50548035 + L3 LINE CR1 4102 4178 -311 1 1386 792 321 88 6 chr4 105082088 105082417 -50547703 + L1ME4a LINE L1 5569 5924 -200 1 1386 221 359 28 19 chr4 105082682 105082790 -50547330 - MIRm SINE MIR -115 161 53 1 1386 408 241 18 9 chr4 105083163 105083272 -50546848 - PB1D10 SINE Alu -7 110 1 1 1386 332 268 0 12 chr4 105083897 105083980 -50546140 + ID4_ SINE ID 1 82 -1 1 1386 1110 99 0 0 chr4 105084465 105084627 -50545493 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 1 1386 21 0 0 0 chr4 105084699 105084720 -50545400 + AT_rich Low_complexity Low_complexity 1 21 0 1 1386 1228 41 0 20 chr4 105085077 105085226 -50544894 - B1_Mm SINE Alu -1 146 1 1 1386 7486 112 13 9 chr4 105085245 105086719 -50543401 - Lx LINE L1 -5 6649 5169 1 1386 6623 126 13 3 chr4 105086719 105087724 -50542396 + Lx LINE L1 4137 5151 -732 1 1386 977 294 50 6 chr4 105087863 105088202 -50541918 + MTEa LTR MaLR 6 359 -20 1 1386 470 313 52 26 chr4 105088600 105088905 -50541215 + L1MA4 LINE L1 5609 5921 -379 1 1386 23 0 0 0 chr4 105089500 105089523 -50540597 + AT_rich Low_complexity Low_complexity 1 23 0 1 1386 297 68 0 0 chr4 105089646 105089690 -50540430 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1386 957 319 97 17 chr4 105089708 105090183 -50539937 - Lx8 LINE L1 -6 7467 6955 1 1386 286 269 13 13 chr4 105090192 105090271 -50539849 - B1F1 SINE Alu -70 79 1 1 1386 270 0 0 0 chr4 105090273 105090303 -50539817 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1386 339 212 0 0 chr4 105090953 105091033 -50539087 + C-rich Low_complexity Low_complexity 5 84 0 1 1386 277 347 62 43 chr4 105092179 105092390 -50537730 - LTR16E1 LTR ERVL -314 224 10 1 1386 638 286 40 19 chr4 105092701 105092896 -50537224 + B3A SINE B2 5 207 -9 1 1386 318 235 0 0 chr4 105092897 105092978 -50537142 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1 1386 455 254 88 15 chr4 105092987 105093108 -50537012 - MTE2b LTR MaLR -77 302 171 1 1386 183 80 0 0 chr4 105093108 105093133 -50536987 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1386 455 254 88 15 chr4 105093133 105093147 -50536973 - MTE2b LTR MaLR -209 170 157 1 1386 573 250 90 0 chr4 105093362 105093518 -50536602 - MTE2b LTR MaLR -197 182 13 1 1386 416 308 142 80 chr4 105093563 105093838 -50536282 - B4A SINE B4 0 292 1 1 1386 410 288 137 0 chr4 105094485 105094638 -50535482 + MER96 DNA hAT 2 175 0 1 1386 226 274 0 0 chr4 105095438 105095489 -50534631 + CT-rich Low_complexity Low_complexity 2 52 0 1 1386 509 30 15 0 chr4 105096192 105096259 -50533861 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1386 195 42 0 0 chr4 105096490 105096514 -50533606 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 1386 967 283 76 44 chr4 105097844 105098317 -50531803 + L1MC2 LINE L1 5853 6340 -4 1 1386 373 298 41 41 chr4 105098396 105098592 -50531528 - MIR SINE MIR -37 225 30 1 1386 533 285 39 26 chr4 105098977 105099132 -50530988 - Lx5 LINE L1 -17 7033 6877 1 1386 189 398 66 43 chr4 105099716 105100018 -50530102 + L2c LINE L2 3078 3386 -1 1 1386 201 229 164 0 chr4 105100974 105101035 -50529085 - MIRb SINE MIR -160 108 38 1 1386 1043 182 4 107 chr4 105101380 105101632 -50528488 + URR1A DNA MER1_type 1 226 0 1 1386 585 306 163 40 chr4 105101654 105102029 -50528091 + MER31A LTR ERV1 1 421 -64 1 1386 261 0 0 0 chr4 105102617 105102646 -50527474 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1386 357 304 0 57 chr4 105104076 105104233 -50525887 - B4A SINE B4 0 292 145 1 1386 1111 167 40 36 chr4 105106205 105106429 -50523691 + URR1A DNA MER1_type 2 226 0 1 1386 1568 289 127 42 chr4 105106555 105107262 -50522858 + Lx8 LINE L1 6580 7329 -144 1 1386 284 64 21 0 chr4 105107262 105107309 -50522811 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1386 1568 289 127 42 chr4 105107309 105107388 -50522732 + Lx8 LINE L1 7330 7432 -41 1 1386 214 299 91 11 chr4 105109550 105109638 -50520482 - L3 LINE CR1 -1038 3451 3357 1 1386 746 234 61 0 chr4 105109807 105110004 -50520116 - B3 SINE B2 0 216 8 1 1386 218 29 59 0 chr4 105110140 105110174 -50519946 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1386 447 106 0 0 chr4 105110193 105110259 -50519861 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 1 1386 3043 15 0 0 chr4 105110672 105111009 -50519111 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1386 33087 26 28 11 chr4 105111009 105114862 -50515258 + IAPEz-int LTR ERVK 8 3927 -2554 1 1386 14278 13 3 0 chr4 105114844 105116397 -50513723 + IAPEz-int LTR ERVK 4924 6481 0 1 1386 3043 15 0 0 chr4 105116397 105116734 -50513386 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1386 332 329 6 67 chr4 105118949 105119128 -50510992 - L1MC4 LINE L1 -1174 6868 6701 1 1386 311 356 7 15 chr4 105119438 105119575 -50510545 - MIR SINE MIR -66 196 61 1 1387 217 219 40 14 chr4 105119806 105119880 -50510240 + GA-rich Low_complexity Low_complexity 1 76 0 1 1387 309 323 38 34 chr4 105119885 105120148 -50509972 - RMER17C LTR ERVK -146 264 1 1 1387 297 312 31 31 chr4 105120730 105120859 -50509261 - MIRb SINE MIR -74 194 66 1 1387 555 16 0 0 chr4 105121290 105121354 -50508766 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1387 336 143 0 0 chr4 105121355 105121411 -50508709 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 1387 806 107 15 0 chr4 105121419 105121550 -50508570 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 1 1387 385 245 146 80 chr4 105122376 105122678 -50507442 + MER33 DNA MER1_type 2 323 -1 1 1387 327 271 21 10 chr4 105123448 105123545 -50506575 - B1F2 SINE Alu -36 113 16 2 1387 992 318 100 23 chr4 105123901 105124429 -50505691 - MLT1E2 LTR MaLR -49 578 10 2 1387 676 12 0 0 chr4 105126546 105126631 -50503489 + B1_Mm SINE Alu 63 147 0 2 1387 417 39 0 0 chr4 105126631 105126682 -50503438 + (A)n Simple_repeat Simple_repeat 1 51 0 2 1387 416 280 78 50 chr4 105126895 105127113 -50503007 + RMER10A LTR ERVL 16 239 -203 2 1387 260 53 0 26 chr4 105127621 105127660 -50502460 + (TAA)n Simple_repeat Simple_repeat 3 40 0 2 1387 579 85 0 0 chr4 105127762 105127844 -50502276 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 1387 216 0 0 0 chr4 105127844 105127868 -50502252 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1387 352 276 143 60 chr4 105127888 105128154 -50501966 - B4A SINE B4 -4 288 1 2 1387 247 213 26 26 chr4 105128154 105128231 -50501889 - MIR SINE MIR -62 200 124 2 1387 1037 201 29 5 chr4 105128333 105128538 -50501582 - RMER15 LTR ERVL 0 575 366 2 1387 1021 211 20 0 chr4 105128752 105128951 -50501169 - RMER15 LTR ERVL -221 354 152 2 1387 208 219 0 0 chr4 105129039 105129080 -50501040 + MIRc SINE MIR 113 153 -115 2 1387 264 351 50 88 chr4 105129106 105129287 -50500833 + B4A SINE B4 1 174 -118 2 1387 1057 197 125 35 chr4 105130811 105131100 -50499020 - RLTR46 LTR ERVK -5 315 1 2 1387 1193 55 7 0 chr4 105131369 105131515 -50498605 - B1_Mus1 SINE Alu 0 148 2 2 1387 522 241 19 0 chr4 105131879 105131987 -50498133 + B1_Mur4 SINE Alu 1 110 -40 2 1387 590 230 26 51 chr4 105132138 105132294 -50497826 + RMER15 LTR ERVL 4 155 -420 2 1387 227 55 38 76 chr4 105132361 105132440 -50497680 + A-rich Low_complexity Low_complexity 4 79 0 2 1387 1564 215 129 3 chr4 105132460 105132824 -50497296 + RMER15 LTR ERVL 166 575 0 2 1387 575 339 137 32 chr4 105133035 105133921 -50496199 + L2 LINE L2 1923 2901 -518 2 1387 584 309 64 37 chr4 105134008 105134334 -50495786 - MLT1A0 LTR MaLR 0 365 31 2 1387 183 42 0 0 chr4 105136094 105136118 -50494002 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1387 414 88 0 0 chr4 105136475 105136543 -50493577 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1387 402 136 0 0 chr4 105137449 105137530 -50492590 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1387 517 260 144 31 chr4 105137555 105137812 -50492308 - B4A SINE B4 0 292 7 2 1387 2488 98 3 0 chr4 105137865 105138191 -50491929 - ORR1A2 LTR MaLR 0 327 1 2 1387 334 319 80 28 chr4 105138431 105138644 -50491476 - L1MC LINE L1 -1771 4375 4152 2 1387 264 183 9 184 chr4 105138887 105139001 -50491119 + RLTR19-int LTR ERVK 3480 3573 -2564 2 1387 310 364 0 8 chr4 105139764 105139897 -50490223 - MIRc SINE MIR -68 200 69 2 1387 220 289 68 38 chr4 105140954 105141087 -50489033 - MIRc SINE MIR -2 266 130 2 1387 839 118 46 7 chr4 105141547 105141700 -50488420 + URR1A DNA MER1_type 68 226 0 2 1387 260 299 60 26 chr4 105143233 105143384 -50486736 - RMER15 LTR ERVL -13 562 407 2 1387 215 214 123 18 chr4 105144121 105144178 -50485942 + MIRb SINE MIR 34 96 -172 2 1387 203 184 0 0 chr4 105144987 105145025 -50485095 + A-rich Low_complexity Low_complexity 1 38 0 2 1387 818 238 39 86 chr4 105145347 105145706 -50484414 + RLTR15 LTR ERVK 1 342 -17 2 1387 253 174 171 23 chr4 105147115 105147203 -50482917 + MIRb SINE MIR 41 141 -127 2 1387 413 36 18 0 chr4 105147603 105147658 -50482462 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 1387 630 49 0 0 chr4 105147658 105147740 -50482380 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1387 268 246 0 0 chr4 105148167 105148236 -50481884 + T-rich Low_complexity Low_complexity 1 69 0 2 1387 264 77 0 0 chr4 105149350 105149389 -50480731 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1387 1592 201 43 35 chr4 105151703 105152105 -50478015 - MT2A LTR ERVL -60 541 1 2 1387 204 383 17 17 chr4 105153000 105153117 -50477003 - MIR SINE MIR -140 122 6 2 1387 1052 269 73 11 chr4 105153766 105154040 -50476080 + B4A SINE B4 2 292 0 2 1387 951 172 194 0 chr4 105154893 105155073 -50475047 + B3 SINE B2 2 216 0 2 1387 195 287 52 31 chr4 105156987 105157084 -50473036 + MIRb SINE MIR 106 204 -64 2 1387 1242 278 86 24 chr4 105157656 105158321 -50471799 - L1_Rod LINE L1 -16 5831 5137 2 1387 323 314 184 11 chr4 105158923 105159113 -50471007 + LTR33A_ LTR ERVL 1 223 -308 2 1387 877 247 32 0 chr4 105159921 105160111 -50470009 - B3A SINE B2 0 198 3 2 1387 1906 263 51 27 chr4 105160186 105160811 -50469309 - L1MB5 LINE L1 -217 5957 5318 2 1387 493 271 34 19 chr4 105160823 105161030 -50469090 - L1MB5 LINE L1 -877 5269 5060 2 1387 801 155 85 0 chr4 105161058 105161187 -50468933 + B1_Mus1 SINE Alu 3 142 -6 2 1387 888 74 0 0 chr4 105161188 105161309 -50468811 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 2 1387 1070 319 77 19 chr4 105161778 105162082 -50468038 - L1PB4 LINE L1 -242 5914 5549 2 1387 1070 150 127 24 chr4 105162082 105162287 -50467833 + URR1A DNA MER1_type 1 226 0 2 1387 1070 325 82 37 chr4 105162287 105162961 -50467159 - L1PB4 LINE L1 -332 5548 4849 2 1387 1357 199 97 15 chr4 105162983 105163314 -50466806 - ORR1D2 LTR MaLR -8 362 5 2 1387 482 302 25 20 chr4 105163324 105163520 -50466600 - L1_Rod LINE L1 -1276 4867 4671 2 1387 1023 292 55 10 chr4 105163539 105164030 -50466090 - L1_Rod LINE L1 -2309 3834 3322 2 1387 298 211 84 0 chr4 105164044 105164115 -50466005 - PB1D9 SINE Alu -31 89 13 2 1387 1210 48 7 0 chr4 105164139 105164286 -50465834 - B1_Mus1 SINE Alu 0 148 1 2 1387 1485 67 0 0 chr4 105164297 105164491 -50465629 - L1_Mus2 LINE L1 0 6566 6373 2 1387 535 280 41 31 chr4 105164511 105164542 -50465578 - B3A SINE B2 0 198 171 2 1387 288 0 0 0 chr4 105164542 105164574 -50465546 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1387 535 280 41 31 chr4 105164574 105164737 -50465383 - B3A SINE B2 -28 170 3 2 1387 1146 265 86 22 chr4 105165646 105166018 -50464102 - MTD LTR MaLR -8 371 6 2 1387 1233 269 70 31 chr4 105166038 105166075 -50464045 - MTD LTR MaLR -14 405 370 2 1387 468 0 0 0 chr4 105166075 105166127 -50463993 + (TAA)n Simple_repeat Simple_repeat 3 54 0 2 1387 1233 269 70 31 chr4 105166127 105166476 -50463644 - MTD LTR MaLR -50 369 4 2 1387 5741 66 1 0 chr4 105166500 105167216 -50462904 - L1Md_F2 LINE L1 -190 5693 4977 2 1387 6989 77 8 5 chr4 105167216 105168152 -50461968 + L1Md_F2 LINE L1 5645 6582 0 2 1387 34 0 0 0 chr4 105168152 105168186 -50461934 + AT_rich Low_complexity Low_complexity 1 34 0 2 1387 285 277 74 25 chr4 105169105 105169227 -50460893 - MLT1K LTR MaLR -368 227 100 2 1387 2357 159 113 6 chr4 105169242 105169718 -50460402 - RLTR11A2 LTR ERVK 0 527 1 2 1387 315 0 0 0 chr4 105172698 105172733 -50457387 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2 1387 250 245 0 47 chr4 105173449 105173556 -50456564 + (ATGGTG)n Simple_repeat Simple_repeat 4 105 0 2 1387 412 281 211 45 chr4 105173622 105173868 -50456252 + B4A SINE B4 5 291 -1 2 1387 698 184 23 0 chr4 105173881 105174055 -50456065 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1387 251 93 0 23 chr4 105174058 105174102 -50456018 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1387 336 287 241 0 chr4 105174263 105174437 -50455683 + MLT1D LTR MaLR 283 498 -7 2 1387 480 59 0 0 chr4 105174553 105174621 -50455499 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1387 257 254 94 20 chr4 105174987 105175105 -50455015 + MIRb SINE MIR 14 144 -124 2 1387 4485 16 0 0 chr4 105175181 105175674 -50454446 + MT2_Mm LTR ERVL 1 493 0 2 1387 3092 67 25 2 chr4 105175826 105176228 -50453892 + L1Md_F2 LINE L1 6172 6582 0 2 1387 240 111 0 0 chr4 105179229 105179265 -50450855 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1387 333 0 0 0 chr4 105180396 105180433 -50449687 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2 1387 404 277 205 5 chr4 105180985 105181170 -50448950 - MTEa LTR MaLR -10 369 148 2 1387 1852 219 74 147 chr4 105181406 105182065 -50448055 + RMER19C LTR ERVK 1 611 0 2 1387 214 242 135 10 chr4 105182115 105182211 -50447909 - MIRc SINE MIR -83 185 78 2 1387 250 132 0 36 chr4 105182732 105182787 -50447333 + GA-rich Low_complexity Low_complexity 2 54 0 2 1387 351 0 0 0 chr4 105183259 105183298 -50446822 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1387 509 267 132 8 chr4 105183496 105183738 -50446382 + RLTR10A LTR ERVK 140 411 0 2 1387 1045 115 0 10 chr4 105184424 105184626 -50445494 + (GA)n Simple_repeat Simple_repeat 1 200 0 2 1387 403 133 173 0 chr4 105184629 105184704 -50445416 - B3A SINE B2 -110 88 1 2 1387 244 167 0 0 chr4 105185058 105185100 -50445020 - 5S rRNA rRNA -79 42 1 2 1387 343 283 70 0 chr4 105186881 105187006 -50443114 - MIR SINE MIR -96 172 37 2 1387 180 0 0 0 chr4 105187405 105187425 -50442695 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1387 279 295 56 35 chr4 105187572 105187716 -50442404 - B1_Mur1 SINE Alu -2 147 1 2 1387 3518 158 127 0 chr4 105187755 105188094 -50442026 - RMER6D LTR ERVK 0 720 369 2 1387 387 0 0 0 chr4 105188094 105188137 -50441983 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1387 3518 158 127 0 chr4 105188137 105188436 -50441684 - RMER6D LTR ERVK -352 368 2 2 1387 396 40 0 0 chr4 105189138 105189188 -50440932 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1387 252 59 0 0 chr4 105189854 105189888 -50440232 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1387 901 154 21 7 chr4 105190162 105190306 -50439814 - B1_Mus1 SINE Alu -1 147 2 2 1387 282 95 0 0 chr4 105190369 105190411 -50439709 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 2 1387 365 351 27 12 chr4 105190742 105190976 -50439144 - MIR SINE MIR -22 240 3 2 1387 27 49 0 0 chr4 105191009 105191050 -50439070 + AT_rich Low_complexity Low_complexity 1 41 0 2 1387 378 0 0 0 chr4 105191132 105191174 -50438946 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1387 796 279 37 11 chr4 105191361 105191629 -50438491 - B4A SINE B4 -17 275 1 2 1387 227 260 13 13 chr4 105191657 105191735 -50438385 - L1MC4a LINE L1 -358 7524 7447 2 1387 180 200 0 0 chr4 105191847 105191887 -50438233 + (CAT)n Simple_repeat Simple_repeat 3 42 0 3 1387 244 169 51 0 chr4 105192171 105192230 -50437890 - ID4 SINE ID -19 64 3 3 1387 24 32 0 0 chr4 105192322 105192353 -50437767 + AT_rich Low_complexity Low_complexity 1 31 0 3 1387 378 0 0 0 chr4 105192446 105192488 -50437632 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1387 544 200 58 0 chr4 105192514 105192634 -50437486 - Lx9 LINE L1 -226 7418 7292 3 1387 244 245 200 20 chr4 105192724 105192824 -50437296 + B1F1 SINE Alu 32 149 0 3 1387 473 204 19 37 chr4 105193004 105193111 -50437009 - LTR40b LTR ERVL -19 443 339 3 1387 2561 156 19 40 chr4 105193268 105193742 -50436378 - Lx4B LINE L1 -3 7055 6592 3 1387 5437 139 33 13 chr4 105193743 105194442 -50435678 + L1VL4 LINE L1 13 731 -5571 3 1387 1240 47 0 0 chr4 105194442 105194590 -50435530 + B1_Mus1 SINE Alu 1 148 0 3 1387 5437 139 33 13 chr4 105194590 105194796 -50435324 + L1VL4 LINE L1 732 936 -5366 3 1387 21 36 0 0 chr4 105195144 105195172 -50434948 + AT_rich Low_complexity Low_complexity 1 28 0 3 1387 459 361 59 38 chr4 105195334 105195861 -50434259 - L1M5 LINE L1 -1403 4743 4206 3 1387 21 36 0 0 chr4 105195987 105196015 -50434105 + AT_rich Low_complexity Low_complexity 1 28 0 3 1387 320 308 165 23 chr4 105196653 105196810 -50433310 + L2 LINE L2 1488 1678 -1741 3 1387 4676 65 2 2 chr4 105196810 105197400 -50432720 - L1Md_F2 LINE L1 0 6582 5993 3 1387 320 308 165 23 chr4 105197400 105197588 -50432532 + L2 LINE L2 1679 1882 -1537 3 1387 606 212 104 16 chr4 105198278 105198460 -50431660 - RMER17C LTR ERVK -5 405 208 3 1387 556 213 132 18 chr4 105198536 105198703 -50431417 - Lx9 LINE L1 -543 7101 6916 3 1387 1622 259 82 4 chr4 105198702 105199201 -50430919 + Lx9 LINE L1 7106 7643 -1 3 1387 471 87 0 0 chr4 105199888 105199957 -50430163 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1387 288 239 95 5 chr4 105200754 105200896 -50429224 - L1M4 LINE L1 -739 5445 5292 3 1387 446 316 189 21 chr4 105200948 105201460 -50428660 + L1ME2z LINE L1 5561 6161 -283 3 1387 518 204 0 30 chr4 105202863 105202964 -50427156 + B1F SINE Alu 1 98 -51 3 1387 1067 267 141 8 chr4 105203087 105203442 -50426678 - MTD LTR MaLR -17 402 1 3 1387 242 39 18 55 chr4 105203571 105203626 -50426494 + (TTTTTG)n Simple_repeat Simple_repeat 5 57 0 3 1387 395 181 23 45 chr4 105203626 105203759 -50426361 - RMER17B LTR ERVK -499 459 330 3 1387 2552 127 7 21 chr4 105203803 105204230 -50425890 + BGLII LTR ERVK 1 421 0 3 1387 251 347 43 2 chr4 105205149 105205280 -50424840 - MIR SINE MIR -37 231 91 3 1387 380 317 0 32 chr4 105206794 105206918 -50423202 + PB1D7 SINE Alu 1 120 0 3 1387 225 0 0 0 chr4 105206924 105206949 -50423171 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1387 1563 52 0 15 chr4 105207225 105207421 -50422699 - B2_Mm2 SINE B2 -2 193 1 3 1387 21 57 0 0 chr4 105207482 105207517 -50422603 + AT_rich Low_complexity Low_complexity 1 35 0 3 1387 242 352 60 27 chr4 105209318 105209502 -50420618 + MIR SINE MIR 41 230 -32 3 1387 670 156 13 96 chr4 105209604 105209760 -50420360 + B1_Mur4 SINE Alu 1 143 -7 3 1387 411 184 0 0 chr4 105209778 105209865 -50420255 + GA-rich Low_complexity Low_complexity 1 87 0 3 1387 271 265 35 0 chr4 105210496 105210598 -50419522 - L1MB1 LINE L1 -4 6185 6078 3 1387 1439 209 19 3 chr4 105210598 105210905 -50419215 - MTD LTR MaLR 0 419 108 3 1387 3242 63 8 0 chr4 105210915 105211312 -50418808 + MTB LTR MaLR 1 400 0 3 1387 362 328 95 9 chr4 105211361 105211592 -50418528 - L1MB1 LINE L1 -121 6068 5818 3 1387 250 217 85 25 chr4 105211867 105211985 -50418135 - Tigger13a DNA MER2_type -493 278 154 3 1387 182 37 0 36 chr4 105213333 105213361 -50416759 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1387 24 32 0 0 chr4 105213813 105213844 -50416276 + AT_rich Low_complexity Low_complexity 1 31 0 3 1387 391 173 29 35 chr4 105213861 105214035 -50416085 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 3 1387 1998 290 81 28 chr4 105214092 105214887 -50415233 - Lx8 LINE L1 -45 7428 6592 3 1387 821 160 18 62 chr4 105215007 105215233 -50414887 + Lx9 LINE L1 7426 7641 -3 3 1387 191 338 49 12 chr4 105215612 105215693 -50414427 + L2c LINE L2 3047 3130 -257 3 1387 195 100 0 0 chr4 105215790 105215820 -50414300 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 3 1387 33 25 0 0 chr4 105215960 105216000 -50414120 + AT_rich Low_complexity Low_complexity 1 40 0 3 1387 237 301 0 51 chr4 105216074 105216172 -50413948 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 3 1387 295 349 53 0 chr4 105217435 105217567 -50412553 + MIR SINE MIR 72 210 -52 3 1387 3277 128 58 213 chr4 105217610 105218505 -50411615 + RMER6A LTR ERVK 1 756 0 3 1387 225 0 0 0 chr4 105219288 105219313 -50410807 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1387 3449 18 13 0 chr4 105219798 105220189 -50409931 + MTA_Mm LTR MaLR 1 396 0 3 1387 1145 171 0 19 chr4 105220579 105220794 -50409326 + Lx4A LINE L1 6845 7055 -3 3 1387 280 114 11 0 chr4 105220800 105220851 -50409269 + ORR1B1 LTR MaLR 320 386 -8 3 1387 24 32 0 0 chr4 105221065 105221096 -50409024 + AT_rich Low_complexity Low_complexity 1 31 0 3 1387 283 221 0 0 chr4 105221169 105221230 -50408890 - B1F1 SINE Alu -45 72 12 3 1387 193 286 125 67 chr4 105222254 105222374 -50407746 + MIRc SINE MIR 26 152 -116 3 1387 242 319 57 40 chr4 105222659 105222835 -50407285 - MER121 Unknown Unknown -94 318 140 3 1387 378 0 0 0 chr4 105222878 105222920 -50407200 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1387 205 340 0 0 chr4 105224508 105224558 -50405562 + L2a LINE L2 3359 3408 -18 3 1387 640 294 151 20 chr4 105225152 105225450 -50404670 - MER58B DNA MER1_type -2 339 3 3 1387 197 329 54 54 chr4 105225499 105225647 -50404473 - MIR SINE MIR -93 169 22 3 1387 541 294 63 38 chr4 105225737 105225882 -50404238 + RSINE1 SINE B4 3 152 -13 3 1387 468 0 0 0 chr4 105225882 105225934 -50404186 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1387 541 294 63 38 chr4 105225934 105225947 -50404173 + RSINE1 SINE B4 153 165 0 3 1387 195 235 0 0 chr4 105225947 105225998 -50404122 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1387 27 29 0 0 chr4 105226013 105226047 -50404073 + AT_rich Low_complexity Low_complexity 1 34 0 3 1387 322 333 26 92 chr4 105226059 105226211 -50403909 + MIR3 SINE MIR 11 152 -56 3 1387 868 289 39 125 chr4 105226360 105226777 -50403343 + MTEb LTR MaLR 2 417 -2 3 1387 210 150 0 0 chr4 105226928 105226968 -50403152 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1387 312 288 30 136 chr4 105227130 105227299 -50402821 + MER102b DNA MER1_type 2 152 -189 3 1387 582 114 0 0 chr4 105227299 105227387 -50402733 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 3 1387 255 225 11 140 chr4 105228125 105228218 -50401902 - B1F1 SINE Alu -63 86 6 3 1387 313 216 137 49 chr4 105228518 105228620 -50401500 - MER20 DNA MER1_type -14 205 95 3 1387 264 120 0 0 chr4 105228796 105228846 -50401274 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 3 1387 327 154 0 0 chr4 105229096 105229161 -50400959 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1387 297 0 0 0 chr4 105229179 105229212 -50400908 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1387 1392 294 73 24 chr4 105229212 105229995 -50400125 - L1MA4 LINE L1 -357 5943 5096 3 1387 434 360 81 20 chr4 105230029 105230327 -50399793 + MLT1F-int LTR MaLR 850 1165 -244 3 1387 353 368 110 7 chr4 105230458 105230871 -50399249 + MLT1F LTR MaLR 63 528 -20 3 1387 307 272 32 11 chr4 105231474 105231567 -50398553 - L1MDa LINE L1 -4123 2510 2416 3 1387 494 286 85 50 chr4 105231690 105231948 -50398172 - RMER20B LTR ERVK -211 416 150 3 1387 28 0 0 0 chr4 105232126 105232154 -50397966 + AT_rich Low_complexity Low_complexity 1 28 0 3 1387 244 317 17 0 chr4 105232390 105232450 -50397670 - ID4_ SINE ID -21 62 2 3 1387 279 363 35 0 chr4 105233374 105233487 -50396633 + MIRb SINE MIR 76 192 -76 3 1387 491 250 103 16 chr4 105233788 105233914 -50396206 - B1F SINE Alu -12 137 1 3 1387 351 307 156 47 chr4 105234275 105234723 -50395397 + L1ME3B LINE L1 5456 5952 -288 3 1387 204 192 39 0 chr4 105235857 105235909 -50394211 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 3 1387 504 0 0 0 chr4 105236353 105236409 -50393711 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1387 291 327 36 79 chr4 105236563 105236790 -50393330 + LTR16C LTR ERVL 156 442 -126 3 1387 395 287 69 19 chr4 105237036 105237196 -50392924 + LTR16E1 LTR ERVL 369 536 -2 3 1387 277 297 62 9 chr4 105238704 105238816 -50391304 + L2b LINE L2 2705 2822 -597 3 1387 285 367 67 50 chr4 105239183 105239421 -50390699 + L2b LINE L2 3134 3375 0 3 1387 479 279 69 77 chr4 105240382 105240731 -50389389 - RLTR12B LTR ERVK -165 363 18 3 1387 205 245 0 39 chr4 105241051 105241102 -50389018 + (ATG)n Simple_repeat Simple_repeat 3 51 0 3 1387 438 196 0 0 chr4 105241205 105241307 -50388813 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1387 267 301 0 14 chr4 105241317 105241391 -50388729 - MLT1A0 LTR MaLR -28 346 274 3 1387 366 335 33 43 chr4 105241524 105241708 -50388412 - MLT1A0 LTR MaLR -183 182 1 3 1387 238 351 129 22 chr4 105241743 105241921 -50388199 - MIRb SINE MIR -59 209 13 3 1387 276 296 61 65 chr4 105241888 105242070 -50388050 - MIR SINE MIR -57 211 29 3 1387 447 343 40 6 chr4 105242898 105243074 -50387046 + MIRb SINE MIR 77 258 -10 3 1387 19128 28 0 0 chr4 105243106 105245335 -50384785 - L1_Mm LINE L1 -353 5530 3303 3 1387 5622 42 2 3 chr4 105245335 105245978 -50384142 + L1Md_F2 LINE L1 5940 6581 -1 3 1387 204 40 0 0 chr4 105246071 105246096 -50384024 + (CAAGA)n Simple_repeat Simple_repeat 2 26 0 3 1387 513 0 0 0 chr4 105246828 105246885 -50383235 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1387 191 200 180 45 chr4 105247214 105247303 -50382817 - MIRc SINE MIR -15 253 153 3 1387 1265 247 294 7 chr4 105247367 105247779 -50382341 - Lx6 LINE L1 -11 7449 6920 4 1387 343 268 38 85 chr4 105248773 105248879 -50381241 - MER5A DNA MER1_type 0 189 89 4 1387 192 111 0 0 chr4 105249046 105249082 -50381038 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1387 486 266 15 30 chr4 105249119 105249251 -50380869 - RSINE1 SINE B4 -24 141 12 4 1387 779 289 28 24 chr4 105249554 105249845 -50380275 + B4A SINE B4 1 292 0 4 1387 483 18 0 0 chr4 105249911 105249967 -50380153 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1387 270 0 0 0 chr4 105249967 105249996 -50380124 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1387 357 362 58 33 chr4 105250465 105250708 -50379412 - LTR81C LTR ERV1? -366 787 539 4 1388 255 203 0 0 chr4 105253119 105253188 -50376932 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1388 47 53 0 0 chr4 105253228 105253303 -50376817 + AT_rich Low_complexity Low_complexity 1 75 0 4 1388 419 275 36 64 chr4 105254156 105254296 -50375824 + B1F2 SINE Alu 3 138 -11 4 1388 337 317 46 81 chr4 105254597 105254825 -50375295 - MIRb SINE MIR -24 244 8 4 1388 221 264 15 30 chr4 105256393 105256526 -50373594 + CT-rich Low_complexity Low_complexity 2 132 0 4 1388 795 21 0 0 chr4 105256544 105256637 -50373483 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 4 1388 50 31 0 0 chr4 105257791 105257855 -50372265 + AT_rich Low_complexity Low_complexity 1 64 0 4 1388 1077 225 0 36 chr4 105257986 105258207 -50371913 - B3 SINE B2 -3 213 1 4 1388 277 336 24 8 chr4 105258899 105259022 -50371098 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 1388 372 268 140 35 chr4 105259082 105259112 -50371008 - RSINE1 SINE B4 -5 160 129 4 1388 211 72 0 45 chr4 105259112 105259156 -50370964 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1388 372 268 140 35 chr4 105259156 105259268 -50370852 - RSINE1 SINE B4 -37 128 3 4 1388 495 101 0 0 chr4 105260580 105260659 -50369461 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1388 458 226 120 0 chr4 105260704 105260837 -50369283 - L1_Rod LINE L1 0 5847 5699 4 1388 329 331 90 30 chr4 105260825 105260959 -50369161 + Lx7 LINE L1 5587 5728 -1968 4 1388 359 322 99 42 chr4 105261578 105261715 -50368405 + L1MB7 LINE L1 185 340 -5796 4 1388 1450 247 79 13 chr4 105261715 105262108 -50368012 - MTD LTR MaLR 0 419 1 4 1388 359 322 99 42 chr4 105262108 105262372 -50367748 + L1MB7 LINE L1 341 609 -5527 4 1388 730 320 125 32 chr4 105262433 105263370 -50366750 + L1MB7 LINE L1 621 1644 -4598 4 1388 958 205 70 5 chr4 105263618 105263819 -50366301 - B3 SINE B2 -1 215 2 4 1388 1352 233 111 3 chr4 105264114 105264446 -50365674 + ORR1D1 LTR MaLR 1 368 -6 4 1388 347 290 52 2 chr4 105264451 105264609 -50365511 + L1M4 LINE L1 4453 4617 -1523 4 1388 381 271 0 0 chr4 105264694 105264790 -50365330 + L1MB7 LINE L1 4068 4163 -1983 4 1388 847 300 117 55 chr4 105264890 105266141 -50363979 + L1MB7 LINE L1 4827 6184 0 4 1388 322 239 22 43 chr4 105266411 105266503 -50363617 - B1_Mur1 SINE Alu -19 130 41 4 1388 261 120 18 123 chr4 105266524 105266581 -50363539 - B1_Mus2 SINE Alu -88 59 9 4 1388 36424 45 0 3 chr4 105266581 105271929 -50358191 + L1Md_T LINE L1 162 5589 -297 4 1388 8857 41 0 0 chr4 105271929 105272925 -50357195 + L1Md_T LINE L1 5590 6585 0 4 1388 287 132 33 11 chr4 105272937 105273029 -50357091 + A-rich Low_complexity Low_complexity 2 95 0 4 1388 221 356 19 70 chr4 105273754 105273849 -50356271 + MIRb SINE MIR 3 92 -176 4 1388 2618 145 52 12 chr4 105273849 105274254 -50355866 + MTC LTR MaLR 1 421 0 4 1388 221 356 19 70 chr4 105274254 105274315 -50355805 + MIRb SINE MIR 93 151 -117 4 1388 455 249 74 57 chr4 105274462 105274698 -50355422 + L1ME3A LINE L1 5505 5761 -412 4 1388 566 315 118 25 chr4 105274801 105275081 -50355039 - Cheshire DNA MER1_type -2108 312 7 4 1388 319 367 65 23 chr4 105275179 105275441 -50354679 + L1ME3A LINE L1 5789 6061 -112 4 1388 2384 170 102 33 chr4 105276275 105276756 -50353364 + RMER20A LTR ERVK 3 516 0 4 1388 376 355 26 37 chr4 105276862 105277052 -50353068 - LTR16B LTR ERVL -26 437 250 4 1388 1246 72 84 0 chr4 105277190 105277356 -50352764 - B2_Mm2 SINE B2 -14 181 2 4 1388 2715 63 0 0 chr4 105277631 105277966 -50352154 + L1Md_F3 LINE L1 5252 5586 -297 4 1388 8368 37 2 0 chr4 105277966 105278948 -50351172 + L1Md_F3 LINE L1 5587 6570 -14 4 1388 267 350 7 14 chr4 105278955 105279094 -50351026 + RSINE1 SINE B4 2 139 -26 4 1388 32 43 0 0 chr4 105279117 105279163 -50350957 + AT_rich Low_complexity Low_complexity 1 46 0 4 1388 250 319 0 21 chr4 105279756 105279849 -50350271 - MIRc SINE MIR -112 156 66 4 1388 629 88 10 0 chr4 105279902 105280004 -50350116 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1388 1098 75 0 26 chr4 105280153 105280166 -50349954 - B1_Mus1 SINE Alu 0 148 137 4 1388 317 43 21 0 chr4 105280166 105280213 -50349907 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1388 1098 75 0 26 chr4 105280213 105280350 -50349770 - B1_Mus1 SINE Alu -12 136 2 4 1388 21 57 0 0 chr4 105280376 105280411 -50349709 + AT_rich Low_complexity Low_complexity 1 35 0 4 1388 951 93 6 32 chr4 105280522 105280678 -50349442 - URR1A DNA MER1_type 0 226 75 4 1388 180 0 0 0 chr4 105280840 105280860 -50349260 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 4 1388 302 368 41 53 chr4 105282323 105282567 -50347553 + L1MEf LINE L1 588 828 -5372 4 1388 22 70 0 0 chr4 105282612 105282655 -50347465 + AT_rich Low_complexity Low_complexity 1 43 0 4 1388 292 271 11 119 chr4 105282808 105282984 -50347136 - Lx9 LINE L1 -501 7143 6987 4 1388 495 0 0 0 chr4 105283265 105283320 -50346800 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1388 464 121 11 0 chr4 105283321 105283412 -50346708 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 1388 323 107 0 35 chr4 105283977 105284035 -50346085 + (TCCC)n Simple_repeat Simple_repeat 1 56 0 4 1388 264 260 39 13 chr4 105284362 105284440 -50345680 + GA-rich Low_complexity Low_complexity 1 80 0 4 1388 2323 264 58 43 chr4 105285703 105286630 -50343490 - Charlie1a DNA MER1_type -39 1416 476 4 1388 381 326 57 94 chr4 105286615 105286933 -50343187 - Charlie1a DNA MER1_type -1143 312 7 4 1388 576 0 0 0 chr4 105287021 105287085 -50343035 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1388 226 364 37 19 chr4 105287318 105287476 -50342644 + MIRb SINE MIR 2 155 -53 4 1388 408 343 19 57 chr4 105287625 105287835 -50342285 + LTR16A LTR ERVL 245 446 -5 4 1388 854 233 0 0 chr4 105287877 105288049 -50342071 - MTC LTR MaLR -54 367 196 4 1388 6974 137 9 0 chr4 105288063 105289180 -50340940 - Lx LINE L1 0 6654 5525 4 1388 6703 80 7 45 chr4 105289180 105290886 -50339234 - L1VL4 LINE L1 -1714 1845 178 4 1388 412 270 0 29 chr4 105290900 105291003 -50339117 - B3 SINE B2 -114 102 3 4 1388 255 303 21 145 chr4 105291100 105291293 -50338827 + MIR SINE MIR 24 192 -70 4 1388 38713 30 0 0 chr4 105291738 105298394 -50331726 - L1Md_T LINE L1 0 6585 1 4 1388 195 262 0 0 chr4 105298400 105298442 -50331678 + L4 LINE RTE 1977 2018 -11 4 1388 726 117 0 0 chr4 105298669 105298780 -50331340 + (TTC)n Simple_repeat Simple_repeat 1 111 0 4 1388 182 247 36 83 chr4 105299702 105299786 -50330334 + MIRc SINE MIR 7 86 -182 4 1388 1202 171 9 9 chr4 105300260 105300478 -50329642 + URR1A DNA MER1_type 1 218 -8 4 1388 22 0 0 0 chr4 105301293 105301315 -50328805 + AT_rich Low_complexity Low_complexity 1 22 0 4 1388 303 302 125 0 chr4 105302942 105303134 -50326986 + MLT1L LTR MaLR 387 602 -8 4 1388 305 279 134 9 chr4 105303564 105303676 -50326444 + L2b LINE L2 3248 3373 -2 4 1388 636 26 0 0 chr4 105304292 105304370 -50325750 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1388 256 332 76 46 chr4 105304858 105305120 -50325000 - L2c LINE L2 -4 3383 3114 4 1388 186 266 23 92 chr4 105306686 105306773 -50323347 + MIRb SINE MIR 113 193 -75 4 1388 2777 58 0 0 chr4 105306775 105307165 -50322955 - L1_Mus1 LINE L1 -653 5914 5525 4 1388 5149 53 5 8 chr4 105307163 105307792 -50322328 + L1_Mus1 LINE L1 5917 6543 -24 4 1388 8063 14 0 0 chr4 105307788 105308690 -50321430 + L1Md_T LINE L1 4685 5586 -297 4 1388 9194 4 0 0 chr4 105308690 105309686 -50320434 + L1Md_T LINE L1 5587 6582 0 4 1388 219 173 0 0 chr4 105309708 105309760 -50320360 + A-rich Low_complexity Low_complexity 1 52 0 4 1388 297 0 0 0 chr4 105310333 105310366 -50319754 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1388 693 97 0 0 chr4 105310392 105310485 -50319635 + 4.5SRNA scRNA scRNA 1 93 -1 4 1388 1130 95 0 0 chr4 105310485 105310632 -50319488 + B1_Mus2 SINE Alu 1 147 0 4 1388 201 261 143 56 chr4 105312716 105312842 -50317278 - MIRc SINE MIR -9 259 123 4 1388 534 238 0 0 chr4 105312983 105313084 -50317036 + B1_Mur2 SINE Alu 1 101 -48 4 1388 266 143 0 39 chr4 105313079 105313130 -50316990 - ORR1C2 LTR MaLR -335 49 1 4 1388 342 0 0 0 chr4 105313270 105313308 -50316812 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1388 286 184 26 0 chr4 105313308 105313384 -50316736 + GA-rich Low_complexity Low_complexity 1 78 0 4 1388 308 24 24 0 chr4 105313860 105313901 -50316219 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1388 197 348 43 0 chr4 105314774 105314866 -50315254 + MIR SINE MIR 48 143 -119 4 1388 399 184 0 0 chr4 105314904 105314991 -50315129 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 4 1388 329 283 59 26 chr4 105315119 105315391 -50314729 + RMER17C LTR ERVK 79 359 -51 4 1388 617 323 5 20 chr4 105316218 105316417 -50313703 - B3A SINE B2 -2 196 1 4 1388 252 282 25 37 chr4 105316592 105316673 -50313447 + MLT1I LTR MaLR 7 86 -325 4 1388 3402 260 109 26 chr4 105316796 105317732 -50312388 - Lx9 LINE L1 -333 7311 6348 4 1388 562 36 24 12 chr4 105317732 105317817 -50312303 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 4 1388 3402 260 109 26 chr4 105317817 105317963 -50312157 - Lx9 LINE L1 -1297 6347 6139 4 1388 415 333 9 0 chr4 105317973 105318087 -50312033 - ID_B1 SINE B4 -23 201 87 4 1388 442 248 8 41 chr4 105318168 105318290 -50311830 - MLT1A0 LTR MaLR -4 361 244 4 1388 1474 158 101 16 chr4 105318362 105318670 -50311450 - ORR1B1 LTR MaLR -8 386 53 4 1388 374 261 116 60 chr4 105318705 105318921 -50311199 - L1MC4 LINE L1 -844 7198 6971 4 1388 234 0 0 0 chr4 105319115 105319141 -50310979 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 4 1388 185 255 0 18 chr4 105319523 105319579 -50310541 + MIRc SINE MIR 88 142 -126 4 1388 314 273 0 13 chr4 105321376 105321454 -50308666 - MER117 DNA MER1_type 0 197 121 5 1388 1165 219 0 9 chr4 105322148 105322365 -50307755 - B3 SINE B2 0 216 2 5 1388 29 0 0 0 chr4 105322605 105322634 -50307486 + AT_rich Low_complexity Low_complexity 1 29 0 5 1388 216 0 0 0 chr4 105322648 105322672 -50307448 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1388 300 265 204 98 chr4 105322835 105323090 -50307030 - B4A SINE B4 -8 284 3 5 1388 189 0 0 0 chr4 105324935 105324956 -50305164 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 5 1388 343 151 0 0 chr4 105325168 105325221 -50304899 + ORR1B2 LTR MaLR 313 365 -2 5 1388 600 331 62 45 chr4 105326396 105326753 -50303367 + MLT1A0 LTR MaLR 1 363 -2 5 1388 315 255 30 10 chr4 105327303 105327402 -50302718 + GA-rich Low_complexity Low_complexity 1 101 0 5 1388 34 55 0 0 chr4 105327440 105327495 -50302625 + AT_rich Low_complexity Low_complexity 1 55 0 5 1388 1441 75 25 15 chr4 105327822 105328025 -50302095 + L1_Mus1 LINE L1 6363 6567 0 5 1388 1453 128 27 0 chr4 105328026 105328245 -50301875 + URR1B DNA MER1_type 1 225 0 5 1388 332 257 119 21 chr4 105328315 105328458 -50301662 + MLT1B LTR MaLR 11 167 -223 5 1388 278 148 0 18 chr4 105328463 105328518 -50301602 + CT-rich Low_complexity Low_complexity 3 56 0 5 1388 894 108 178 31 chr4 105329428 105329619 -50300501 - URR1B DNA MER1_type 0 225 7 5 1388 336 388 36 12 chr4 105329648 105329901 -50300219 + ERVL-E-int LTR ERVL 4792 5050 -617 5 1388 32 26 0 0 chr4 105330444 105330483 -50299637 + AT_rich Low_complexity Low_complexity 1 39 0 5 1388 218 157 48 0 chr4 105330499 105330582 -50299538 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1388 21 0 0 0 chr4 105330603 105330624 -50299496 + AT_rich Low_complexity Low_complexity 1 21 0 5 1388 209 176 0 38 chr4 105331658 105331711 -50298409 + (TTA)n Simple_repeat Simple_repeat 3 53 0 5 1388 561 278 6 58 chr4 105331719 105331897 -50298223 - RSINE1 SINE B4 0 165 1 5 1388 1262 261 78 26 chr4 105332422 105332768 -50297352 - ORR1D2 LTR MaLR -6 364 1 5 1388 279 0 0 0 chr4 105333478 105333509 -50296611 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1388 236 323 90 23 chr4 105333649 105333782 -50296338 - MIR SINE MIR -60 202 61 5 1388 711 321 89 0 chr4 105333819 105334148 -50295972 - Tigger5 DNA MER2_type -2098 308 4 5 1388 222 45 44 22 chr4 105334799 105334844 -50295276 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 5 1388 287 105 18 0 chr4 105334841 105334898 -50295222 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 5 1388 229 339 14 30 chr4 105335307 105335473 -50294647 + MIRc SINE MIR 3 162 -46 5 1388 375 23 0 0 chr4 105335950 105335994 -50294126 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1388 5160 67 14 0 chr4 105336134 105336762 -50293358 - Lx3_Mus LINE L1 0 7009 6373 5 1388 5887 73 8 9 chr4 105336762 105337588 -50292532 + Lx3_Mus LINE L1 5557 6377 -632 5 1388 243 364 54 60 chr4 105337793 105337942 -50292178 - L2a LINE L2 -1 3425 3278 5 1388 393 141 0 0 chr4 105337993 105338078 -50292042 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 5 1388 662 322 145 26 chr4 105338172 105338744 -50291376 + MER82 DNA MER2_type 1 640 -13 5 1388 4136 192 199 16 chr4 105339487 105340531 -50289589 - Lx7 LINE L1 -15 7681 6467 5 1388 234 310 17 0 chr4 105341094 105341152 -50288968 + L2a LINE L2 3354 3412 -14 5 1388 230 350 33 12 chr4 105341193 105341320 -50288800 - MER102a DNA MER1_type -74 256 127 5 1388 807 198 133 80 chr4 105341357 105341719 -50288401 - Lx7 LINE L1 0 7696 7316 5 1388 405 233 0 55 chr4 105341742 105341851 -50288269 - Lx7 LINE L1 -333 7363 7261 5 1388 323 224 252 36 chr4 105342359 105342458 -50287662 + ID_B1 SINE B4 87 213 -11 5 1388 184 0 0 88 chr4 105342458 105342492 -50287628 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1388 323 224 252 36 chr4 105342492 105342503 -50287617 + ID_B1 SINE B4 214 221 -3 5 1388 363 162 194 28 chr4 105342592 105342700 -50287420 - Lx9 LINE L1 0 7644 7519 5 1388 303 28 0 0 chr4 105342704 105342740 -50287380 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1388 369 189 43 32 chr4 105342740 105342833 -50287287 - Lx9 LINE L1 -183 7461 7368 5 1388 2625 183 83 45 chr4 105343210 105343788 -50286332 - RMER19C LTR ERVK 0 611 12 5 1388 519 167 16 8 chr4 105343788 105343877 -50286243 + GA-rich Low_complexity Low_complexity 1 91 0 5 1388 1163 107 6 0 chr4 105343877 105344055 -50286065 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 1388 519 167 16 8 chr4 105344055 105344092 -50286028 + polypurine Low_complexity Low_complexity 92 127 0 5 1388 308 254 0 0 chr4 105344812 105344879 -50285241 + MER103 DNA DNA 21 87 -79 5 1388 219 69 0 0 chr4 105345034 105345063 -50285057 + (ATG)n Simple_repeat Simple_repeat 1 29 0 5 1388 366 276 99 62 chr4 105345107 105345203 -50284917 + L1MA6 LINE L1 5931 6034 -266 5 1388 1229 112 203 0 chr4 105345203 105345390 -50284730 + URR1A DNA MER1_type 2 226 0 5 1388 366 276 99 62 chr4 105345390 105345455 -50284665 + L1MA6 LINE L1 6035 6098 -202 5 1388 350 310 64 79 chr4 105345762 105346028 -50284092 + ORR1E LTR MaLR 87 348 -11 5 1388 299 311 92 13 chr4 105346658 105346811 -50283309 + MER5A1 DNA MER1_type 2 166 0 5 1388 1836 281 68 50 chr4 105347208 105347968 -50282152 - Lx8 LINE L1 0 7473 6700 5 1388 372 178 71 71 chr4 105348008 105348135 -50281985 - L1_Mur3 LINE L1 -1187 4693 4567 5 1388 231 224 0 0 chr4 105348138 105348187 -50281933 + L1M3 LINE L1 4398 4446 -1694 5 1388 2956 254 31 38 chr4 105348242 105349136 -50280984 + RMER1C Other Other 44 1330 -12 5 1388 365 191 39 8 chr4 105349165 105349265 -50280855 + L1M3 LINE L1 4445 4547 -1593 5 1388 547 327 27 44 chr4 105349363 105349657 -50280463 - LTR82A LTR ERVL -1 871 583 5 1388 285 216 40 0 chr4 105350110 105350184 -50279936 + L1M2c LINE L1 1566 1642 -5147 5 1388 1010 279 99 39 chr4 105350457 105351001 -50279119 + L1M2c LINE L1 2849 3414 -3371 5 1388 760 228 153 26 chr4 105351001 105351190 -50278930 - B3 SINE B2 -3 213 1 5 1388 1010 279 99 39 chr4 105351190 105351293 -50278827 + L1M2c LINE L1 3415 3534 -3251 5 1388 228 86 0 0 chr4 105352380 105352415 -50277705 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1388 603 197 0 0 chr4 105352447 105352564 -50277556 + L1Md_F LINE L1 417 533 -5986 5 1388 33243 76 13 6 chr4 105352560 105357609 -50272511 + L1Md_F2 LINE L1 503 5585 -298 5 1388 7747 91 0 14 chr4 105357610 105358616 -50271504 + L1Md_F2 LINE L1 5587 6578 -4 5 1388 235 297 133 95 chr4 105358655 105358919 -50271201 + MLT1A0 LTR MaLR 67 340 -25 5 1388 246 32 0 0 chr4 105358927 105358958 -50271162 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1388 362 330 0 19 chr4 105359001 105359109 -50271011 - PB1D10 SINE Alu -2 115 10 5 1388 693 0 0 0 chr4 105359530 105359607 -50270513 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1388 1160 295 32 92 chr4 105359639 105360192 -50269928 + Lx9 LINE L1 6129 6795 -849 5 1388 1842 125 0 11 chr4 105360417 105360684 -50269436 + Lx4A LINE L1 6559 6822 -236 5 1388 267 152 0 70 chr4 105360667 105360738 -50269382 + Lx4A LINE L1 6993 7058 0 5 1388 498 279 106 25 chr4 105361546 105361781 -50268339 + MER121 Unknown Unknown 105 358 -54 5 1388 402 21 0 0 chr4 105362046 105362093 -50268027 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1388 25 31 0 0 chr4 105362497 105362529 -50267591 + AT_rich Low_complexity Low_complexity 1 32 0 5 1388 228 244 233 45 chr4 105362738 105362871 -50267249 - MIR SINE MIR -16 246 89 5 1388 597 295 57 19 chr4 105362960 105362972 -50267148 - B3A SINE B2 -28 170 160 5 1388 378 0 0 0 chr4 105362972 105363014 -50267106 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1388 597 295 57 19 chr4 105363014 105363160 -50266960 - B3A SINE B2 -39 159 6 5 1388 276 354 113 36 chr4 105363978 105364421 -50265699 - LTR33A_ LTR ERVL -19 512 36 5 1388 627 250 19 6 chr4 105365085 105365242 -50264878 - MER58B DNA MER1_type -24 317 159 5 1388 213 39 0 0 chr4 105366177 105366203 -50263917 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1388 905 106 76 0 chr4 105366230 105366362 -50263758 - B1_Mus1 SINE Alu -6 142 1 5 1388 395 350 96 29 chr4 105366976 105367185 -50262935 + LTR33B LTR ERVL 60 282 -221 5 1388 1518 226 101 3 chr4 105367623 105367961 -50262159 - ORR1D1 LTR MaLR -3 371 1 5 1388 24 32 0 0 chr4 105368564 105368595 -50261525 + AT_rich Low_complexity Low_complexity 1 31 0 5 1388 197 344 0 32 chr4 105368673 105368736 -50261384 + MIR3 SINE MIR 133 193 -15 5 1388 408 336 21 14 chr4 105370521 105370663 -50259457 + MIRb SINE MIR 26 168 -100 5 1388 437 305 15 0 chr4 105370923 105371054 -50259066 + B1F SINE Alu 1 133 -16 5 1388 744 316 22 19 chr4 105372800 105372914 -50257206 + RMER17C LTR ERVK 1 159 -251 5 1388 486 0 0 0 chr4 105372914 105372968 -50257152 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 5 1388 213 39 0 0 chr4 105372969 105372995 -50257125 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1388 744 272 44 12 chr4 105372995 105373203 -50256917 + RMER17C LTR ERVK 160 375 -35 5 1388 275 275 132 0 chr4 105374518 105374609 -50255511 + LTR16C LTR ERVL 373 475 -14 5 1388 252 262 83 53 chr4 105376497 105376630 -50253490 + MIR3 SINE MIR 36 172 -36 5 1388 345 247 0 0 chr4 105377413 105377510 -50252610 + CT-rich Low_complexity Low_complexity 2 98 0 5 1388 351 0 0 0 chr4 105377672 105377711 -50252409 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1388 450 0 0 0 chr4 105377711 105377760 -50252360 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1388 278 231 49 37 chr4 105378333 105378414 -50251706 + L2a LINE L2 3343 3424 -2 5 1388 21 36 0 0 chr4 105378488 105378516 -50251604 + GC_rich Low_complexity Low_complexity 1 28 0 5 1388 796 184 6 66 chr4 105379132 105379313 -50250807 - URR1B DNA MER1_type -1 224 55 5 1388 373 291 59 17 chr4 105379298 105379417 -50250703 + RMER4B LTR ERVK 456 579 -6 5 1388 1147 273 63 3 chr4 105380802 105381118 -50249002 - MER58B DNA MER1_type 0 341 7 5 173 340 374 63 22 chr4 105381681 105381949 -50248171 + L1ME4a LINE L1 5643 5921 -203 5 1389 319 352 9 0 chr4 105382249 105382357 -50247763 - L1M5 LINE L1 -553 5687 5579 5 1389 245 360 22 22 chr4 105383238 105383377 -50246743 - RMER15 LTR ERVL -15 560 422 5 1389 339 295 62 8 chr4 105383630 105383760 -50246360 - MLT1B LTR MaLR -29 361 225 6 1389 3010 48 28 0 chr4 105383877 105384233 -50245887 + L1Md_F2 LINE L1 6215 6580 -2 6 1389 1322 236 48 13 chr4 105384586 105384960 -50245160 + L1M2 LINE L1 4298 4684 -1459 6 1389 321 26 0 0 chr4 105384961 105384999 -50245121 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 1389 216 0 0 0 chr4 105385212 105385236 -50244884 + (CATAT)n Simple_repeat Simple_repeat 3 26 0 6 1389 1315 48 0 0 chr4 105385305 105385452 -50244668 - B1_Mus1 SINE Alu -1 147 1 6 1389 738 230 75 0 chr4 105385452 105385613 -50244507 - MTEa LTR MaLR -186 193 21 6 1389 597 276 99 0 chr4 105385618 105385861 -50244259 - L1M2 LINE L1 -653 5647 5381 6 1389 734 192 187 0 chr4 105386131 105386313 -50243807 + B3 SINE B2 1 216 0 6 1389 541 291 123 30 chr4 105387016 105387317 -50242803 + L5 LINE RTE 166 494 -1771 6 1389 1016 191 15 5 chr4 105387652 105387847 -50242273 + ORR1D1 LTR MaLR 1 197 -177 6 1389 184 345 122 47 chr4 105387965 105388178 -50241942 + L2c LINE L2 2972 3200 -187 6 1389 192 152 0 0 chr4 105388258 105388291 -50241829 + A-rich Low_complexity Low_complexity 1 33 0 6 1389 499 355 94 32 chr4 105388374 105389173 -50240947 + L2a LINE L2 2579 3426 0 6 1389 257 301 39 31 chr4 105389694 105389821 -50240299 + L5 LINE RTE 1417 1544 -721 6 1389 204 143 0 0 chr4 105389821 105389863 -50240257 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1389 307 331 68 52 chr4 105389912 105390161 -50239959 + L5 LINE RTE 1599 1851 -414 6 1389 208 53 53 0 chr4 105390619 105390657 -50239463 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1389 834 245 31 0 chr4 105390886 105391078 -50239042 + L1MB5 LINE L1 5911 6108 -66 6 1389 24 77 0 0 chr4 105391087 105391139 -50238981 + AT_rich Low_complexity Low_complexity 1 52 0 6 1389 231 345 117 68 chr4 105391188 105391511 -50238609 - L2a LINE L2 0 3426 3035 6 1389 564 358 41 0 chr4 105392641 105392859 -50237261 - Lx8 LINE L1 -630 6843 6617 6 1389 963 40 71 0 chr4 105392881 105393007 -50237113 - B1_Mm SINE Alu 0 147 13 6 1389 1101 301 48 26 chr4 105393014 105393365 -50236755 - Lx8 LINE L1 -860 6613 6255 6 1389 1444 287 31 18 chr4 105393367 105393821 -50236299 + Lx8 LINE L1 6854 7313 -160 6 1389 322 325 44 58 chr4 105393992 105394217 -50235903 - MER113 DNA MER1_type -5 516 295 6 1389 242 288 0 33 chr4 105394328 105394389 -50235731 + ID2 SINE ID 11 69 -14 6 1389 23 68 0 0 chr4 105394750 105394794 -50235326 + AT_rich Low_complexity Low_complexity 1 44 0 6 1389 441 0 0 0 chr4 105396583 105396632 -50233488 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1389 2346 144 65 8 chr4 105396686 105397057 -50233063 - ORR1B1 LTR MaLR 0 394 3 6 1389 181 340 54 34 chr4 105397283 105397432 -50232688 + L3 LINE CR1 4217 4368 -121 6 1389 244 330 126 34 chr4 105398262 105398381 -50231739 + MLT1K LTR MaLR 16 145 -450 6 1389 590 321 124 40 chr4 105398617 105398971 -50231149 + MLT1D LTR MaLR 1 384 -121 6 1389 401 0 20 0 chr4 105398998 105399047 -50231073 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1389 22 0 0 0 chr4 105400086 105400108 -50230012 + AT_rich Low_complexity Low_complexity 1 22 0 6 1389 25 31 0 0 chr4 105400201 105400233 -50229887 + AT_rich Low_complexity Low_complexity 1 32 0 6 1389 237 344 126 30 chr4 105400263 105400461 -50229659 - MIR SINE MIR -29 233 17 6 1389 358 288 99 21 chr4 105402953 105403095 -50227025 + MIRb SINE MIR 17 169 -99 6 1389 1551 42 16 16 chr4 105403145 105403339 -50226781 + B2_Mm2 SINE B2 2 195 0 6 1389 1290 61 0 0 chr4 105403341 105403489 -50226631 + B1_Mus1 SINE Alu 1 148 0 6 1389 24 53 0 0 chr4 105404054 105404092 -50226028 + AT_rich Low_complexity Low_complexity 1 38 0 6 1389 526 201 314 0 chr4 105404664 105404823 -50225297 + B3 SINE B2 3 211 -5 6 1389 397 345 34 27 chr4 105404900 105404925 -50225195 - B1F1 SINE Alu -1 148 4 6 1389 402 395 0 0 chr4 105404925 105405044 -50225076 - ID_B1 SINE B4 -21 203 85 6 1389 1331 225 38 103 chr4 105405443 105405840 -50224280 + MTE2a LTR MaLR 5 375 -4 6 1389 50 0 0 0 chr4 105405880 105405930 -50224190 + AT_rich Low_complexity Low_complexity 1 50 0 6 1389 331 309 20 48 chr4 105406165 105406311 -50223809 + L2a LINE L2 3285 3426 0 6 1389 728 172 263 56 chr4 105406852 105407031 -50223089 + B3 SINE B2 1 216 0 6 1389 296 384 91 44 chr4 105407523 105407864 -50222256 - LTR16E2 LTR ERVL -122 446 90 6 1389 36102 36 0 0 chr4 105407998 105413637 -50216483 + L1Md_T LINE L1 1 5589 -297 6 1389 9568 6 0 0 chr4 105413637 105414633 -50215487 + L1Md_T LINE L1 5590 6585 0 6 1389 195 259 0 0 chr4 105415154 105415212 -50214908 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 6 1389 1034 304 133 13 chr4 105415258 105415332 -50214788 - L1MB1 LINE L1 -230 5938 5859 6 1389 4017 9 121 0 chr4 105415332 105415772 -50214348 - MT2_Mm LTR ERVL 0 493 1 6 1389 1155 296 96 4 chr4 105415772 105416308 -50213812 - L1MB1 LINE L1 -310 5858 5255 6 1389 302 305 151 31 chr4 105416312 105416728 -50213392 - L1MEc LINE L1 -4199 2201 1736 6 1389 252 0 0 0 chr4 105416827 105416855 -50213265 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1389 398 153 0 28 chr4 105416857 105416942 -50213178 - B1_Mur2 SINE Alu -13 136 28 6 1389 7994 35 0 0 chr4 105416973 105417910 -50212210 + L1Md_F3 LINE L1 4650 5586 -297 6 1389 8641 38 4 2 chr4 105417910 105418892 -50211228 + L1Md_F3 LINE L1 5587 6570 -14 6 1389 245 217 0 0 chr4 105418913 105418959 -50211161 - PB1D10 SINE Alu -34 83 38 6 1389 23 54 0 0 chr4 105420805 105420842 -50209278 + AT_rich Low_complexity Low_complexity 1 37 0 6 1389 299 245 142 20 chr4 105421293 105421432 -50208688 - MIRb SINE MIR -83 185 24 6 1389 1343 222 133 9 chr4 105421628 105421965 -50208155 + MTE2b LTR MaLR 1 379 0 6 1389 248 244 171 0 chr4 105421967 105422049 -50208071 - MTE2b LTR MaLR -283 96 1 6 1389 564 275 52 124 chr4 105422259 105422519 -50207601 + ORR1E LTR MaLR 12 252 -118 6 1389 22 0 0 0 chr4 105425162 105425184 -50204936 + AT_rich Low_complexity Low_complexity 1 22 0 6 1389 195 42 0 0 chr4 105426114 105426138 -50203982 + (CTTTG)n Simple_repeat Simple_repeat 1 24 0 6 1389 248 102 0 20 chr4 105426181 105426231 -50203889 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 6 1389 600 84 0 0 chr4 105427370 105427453 -50202667 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1389 724 278 127 20 chr4 105427497 105427750 -50202370 + B4A SINE B4 13 292 0 6 1389 660 335 105 88 chr4 105428385 105428728 -50201392 + MER119 DNA MER1_type 1 349 -234 6 1389 577 326 40 100 chr4 105428751 105429130 -50200990 + MLT1B LTR MaLR 19 374 -16 6 1389 576 272 110 16 chr4 105429135 105429389 -50200731 + MLT2B4 LTR ERVL 6 283 -273 6 1389 525 276 114 58 chr4 105429511 105429828 -50200292 + RMER20B LTR ERVK 114 484 -143 6 1389 231 331 30 61 chr4 105429928 105430060 -50200060 + RMER20B LTR ERVK 482 609 -18 6 1389 411 329 17 75 chr4 105430138 105430312 -50199808 + MLT2B4 LTR ERVL 404 567 0 6 1389 1427 251 94 29 chr4 105430334 105430811 -50199309 + L1_Mur3 LINE L1 4942 5449 -431 6 1389 1200 74 0 13 chr4 105430854 105431004 -50199116 - B1_Mus1 SINE Alu 0 148 1 6 1389 3191 87 7 26 chr4 105431132 105431592 -50198528 + L1_Mus3 LINE L1 6181 6631 -7 6 1389 1023 279 0 0 chr4 105431635 105431850 -50198270 + B3 SINE B2 2 216 0 6 1389 1035 306 94 12 chr4 105431900 105432228 -50197892 + MLT1A0 LTR MaLR 3 357 -8 6 1389 216 360 133 50 chr4 105432550 105432851 -50197269 - L2c LINE L2 -40 3347 3022 6 1389 200 335 180 13 chr4 105433730 105433969 -50196151 + L2 LINE L2 1925 2203 -1216 6 1389 337 288 9 9 chr4 105435294 105435399 -50194721 - RMER15 LTR ERVL -198 377 273 6 1389 262 250 28 0 chr4 105435435 105435507 -50194613 - RMER15 LTR ERVL -440 135 62 6 1389 361 274 128 8 chr4 105437078 105437203 -50192917 + MER103 DNA DNA 1 140 -26 6 1389 221 282 70 0 chr4 105437624 105437695 -50192425 + MIRb SINE MIR 173 248 -20 6 1389 2613 172 33 72 chr4 105438100 105438645 -50191475 - RLTR28 LTR ERVL 0 524 1 6 1389 454 350 111 40 chr4 105439179 105439658 -50190462 + L1MEd LINE L1 535 1047 -5089 6 1389 755 268 18 0 chr4 105439893 105440057 -50190063 + B3A SINE B2 1 167 -31 6 1389 3707 60 43 25 chr4 105440062 105440545 -50189575 - L1Md_F2 LINE L1 0 6582 6091 6 1389 5208 62 12 6 chr4 105440545 105441438 -50188682 + L1Md_F2 LINE L1 5186 6087 -495 6 1389 306 281 129 7 chr4 105441927 105442067 -50188053 + L1MEd LINE L1 3007 3163 -2983 6 1389 1868 240 29 23 chr4 105442079 105442561 -50187559 - Lx9 LINE L1 -87 7557 7073 6 1389 841 308 59 37 chr4 105442588 105442992 -50187128 - BGLII_B LTR ERVK -27 414 2 6 1389 1932 139 75 10 chr4 105443438 105443744 -50186376 + ORR1A3 LTR MaLR 1 326 0 6 1389 734 248 13 0 chr4 105444504 105444653 -50185467 + RSINE1 SINE B4 11 161 -4 6 1389 378 0 0 0 chr4 105444662 105444704 -50185416 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1389 426 264 321 0 chr4 105444929 105445034 -50185086 - B3 SINE B2 -6 210 83 6 1389 285 75 0 0 chr4 105445034 105445074 -50185046 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1389 426 264 321 0 chr4 105445074 105445127 -50184993 - B3 SINE B2 -134 82 2 6 1389 360 265 9 75 chr4 105445790 105445937 -50184183 + L1MA9 LINE L1 6032 6168 -123 6 1389 445 268 0 0 chr4 105446028 105446140 -50183980 + L1_Mm LINE L1 5513 5624 -259 6 1389 203 301 96 0 chr4 105446306 105446379 -50183741 - MER91C DNA Tip100 -24 116 37 6 1389 456 35 0 0 chr4 105448925 105448983 -50181137 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 6 1389 222 91 0 0 chr4 105449658 105449691 -50180429 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1389 192 77 0 0 chr4 105450456 105450482 -50179638 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 6 1389 286 291 152 8 chr4 105450697 105450815 -50179305 + MLT1A1 LTR MaLR 268 402 -6 6 1389 737 221 7 0 chr4 105450982 105451122 -50178998 + B1_Mur1 SINE Alu 8 148 -1 6 1389 528 16 0 0 chr4 105451131 105451192 -50178928 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1389 288 186 0 0 chr4 105452063 105452122 -50177998 + GA-rich Low_complexity Low_complexity 1 59 0 6 1389 277 333 18 43 chr4 105452164 105452327 -50177793 + L1MA10 LINE L1 6176 6334 0 7 1389 560 172 0 0 chr4 105452536 105452629 -50177491 - MTC LTR MaLR -328 93 1 7 1389 508 339 0 0 chr4 105453025 105453155 -50176965 - ID_B1 SINE B4 0 224 95 7 1389 2299 143 39 46 chr4 105453435 105453846 -50176274 + MTC LTR MaLR 14 421 0 7 1389 270 327 79 0 chr4 105453846 105453937 -50176183 + LTR48 LTR ERV1 325 423 -364 7 1389 180 0 0 0 chr4 105453996 105454016 -50176104 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1389 321 26 0 0 chr4 105454084 105454122 -50175998 + (TTA)n Simple_repeat Simple_repeat 2 39 0 7 1389 330 281 40 40 chr4 105455059 105455209 -50174911 - MER5A DNA MER1_type 0 189 30 7 1389 608 282 27 27 chr4 105455375 105455561 -50174559 + B3A SINE B2 2 187 -11 7 1389 22 56 0 0 chr4 105455781 105455817 -50174303 + AT_rich Low_complexity Low_complexity 1 36 0 7 1389 740 334 73 41 chr4 105455921 105456410 -50173710 - LTR40a LTR ERVL -12 450 1 7 1389 1094 274 86 39 chr4 105456480 105456508 -50173612 + L1M5 LINE L1 3057 3084 -3062 7 1389 486 0 0 0 chr4 105456508 105456562 -50173558 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 7 1389 1094 279 86 39 chr4 105456562 105457146 -50172974 + L1M5 LINE L1 3085 3711 -2435 7 1389 425 287 70 101 chr4 105457161 105457448 -50172672 + L1ME1 LINE L1 5866 6143 -36 7 1389 304 240 173 60 chr4 105457625 105457758 -50172362 + L1M5 LINE L1 5662 5809 -431 7 1389 595 227 98 8 chr4 105457973 105458106 -50172014 + B1F2 SINE Alu 4 148 -1 7 1389 1321 48 0 0 chr4 105458177 105458324 -50171796 + B1_Mus1 SINE Alu 2 148 0 7 1389 222 37 0 0 chr4 105459230 105459257 -50170863 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1389 292 331 39 71 chr4 105459265 105459546 -50170574 + L2a LINE L2 3127 3419 -7 7 1389 753 289 64 41 chr4 105459624 105459891 -50170229 - B4A SINE B4 -18 274 2 7 1389 190 278 18 18 chr4 105460005 105460060 -50170060 + MIRc SINE MIR 152 206 -62 7 1389 569 259 6 25 chr4 105460334 105460475 -50169645 + B1_Mur1 SINE Alu 1 144 -5 7 1389 1230 75 0 0 chr4 105460475 105460891 -50169229 + (GGA)n Simple_repeat Simple_repeat 1 416 0 7 1389 276 187 23 61 chr4 105461417 105461596 -50168524 + (TATAA)n Simple_repeat Simple_repeat 1 172 0 7 1389 30 0 0 0 chr4 105461604 105461634 -50168486 + AT_rich Low_complexity Low_complexity 1 30 0 7 1389 363 214 60 20 chr4 105461677 105461777 -50168343 - RMER12 LTR ERVK -466 856 753 7 1389 204 217 0 0 chr4 105463464 105463510 -50166610 + A-rich Low_complexity Low_complexity 1 46 0 7 1389 188 330 67 11 chr4 105464068 105464157 -50165963 + MIRc SINE MIR 13 106 -162 7 1389 196 253 49 74 chr4 105464512 105464593 -50165527 - MIR SINE MIR -98 164 86 7 1389 378 0 0 0 chr4 105465154 105465196 -50164924 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1389 338 160 0 0 chr4 105465197 105465247 -50164873 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 7 1389 235 239 14 29 chr4 105465716 105465785 -50164335 + L1M5 LINE L1 5221 5288 -858 7 1389 703 309 77 56 chr4 105465967 105466324 -50163796 + ORR1E LTR MaLR 1 372 -7 7 1389 1367 268 102 39 chr4 105466325 105466787 -50163333 + ORR1E-int LTR MaLR 1 491 -1089 7 1389 2856 315 73 26 chr4 105467479 105468532 -50161588 + ORR1E-int LTR MaLR 428 1530 -50 7 1389 512 278 73 121 chr4 105468523 105468877 -50161243 + ORR1E LTR MaLR 16 379 0 7 1389 309 285 104 19 chr4 105468877 105469031 -50161089 + L1M5 LINE L1 5571 5737 -436 7 1389 242 286 0 8 chr4 105469092 105469219 -50160901 + (CATA)n Simple_repeat Simple_repeat 3 128 0 7 1389 963 293 78 46 chr4 105469311 105469683 -50160437 - MLT1B LTR MaLR 0 390 7 7 1389 1756 223 42 8 chr4 105469690 105470048 -50160072 + ORR1D1 LTR MaLR 5 374 0 7 1389 279 300 0 0 chr4 105470550 105470620 -50159500 + BC1_Mm scRNA scRNA 24 93 -59 7 1389 860 208 16 53 chr4 105471008 105471252 -50158868 + RMER17C LTR ERVK 1 235 -175 7 1389 35715 76 10 2 chr4 105471262 105477420 -50152700 - L1Md_F2 LINE L1 -13 6569 335 7 1389 1132 134 11 5 chr4 105477420 105477608 -50152512 + RMER17C LTR ERVK 214 402 -8 7 1389 4706 14 0 0 chr4 105477612 105478105 -50152015 + MT2_Mm LTR ERVL 1 493 0 7 1389 246 32 0 0 chr4 105478532 105478563 -50151557 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1389 405 95 0 0 chr4 105478989 105479052 -50151068 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1389 348 298 64 85 chr4 105479088 105479304 -50150816 - B4A SINE B4 -10 282 1 7 1389 721 226 175 0 chr4 105479883 105480060 -50150060 - B3 SINE B2 0 216 9 7 1389 458 292 19 0 chr4 105480662 105480768 -50149352 + PB1D10 SINE Alu 1 108 -9 7 1389 468 0 0 0 chr4 105480768 105480820 -50149300 + (CATA)n Simple_repeat Simple_repeat 2 53 0 7 1389 372 232 0 118 chr4 105481928 105482021 -50148099 - ID4_ SINE ID 0 83 2 7 1389 524 15 15 0 chr4 105482844 105482909 -50147211 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 7 1389 631 277 168 37 chr4 105482946 105483321 -50146799 - MLT2B4 LTR ERVL -60 496 73 7 1389 647 307 93 10 chr4 105483593 105483797 -50146323 + ID_B1 SINE B4 2 222 -2 7 1389 261 0 0 0 chr4 105484614 105484643 -50145477 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 1389 650 336 102 12 chr4 105484875 105485306 -50144814 + L1MCa LINE L1 4 473 -6035 7 1389 282 243 72 72 chr4 105485504 105485615 -50144505 + L1MCa LINE L1 1506 1616 -4892 7 1389 679 288 0 48 chr4 105485624 105485792 -50144328 + RSINE1 SINE B4 6 165 0 7 1389 444 198 106 51 chr4 105485830 105486020 -50144100 + L1MCa LINE L1 2292 2485 -3836 7 1389 28 0 0 0 chr4 105486240 105486268 -50143852 + AT_rich Low_complexity Low_complexity 1 28 0 7 1389 240 262 0 0 chr4 105486269 105486330 -50143790 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1389 290 208 62 38 chr4 105486504 105486584 -50143536 - L1MEg LINE L1 -4162 2346 2265 7 1389 267 31 0 0 chr4 105486590 105486622 -50143498 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 7 1389 432 97 0 0 chr4 105486622 105486684 -50143436 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 7 1389 360 257 64 35 chr4 105486686 105486827 -50143293 - L1MEg LINE L1 -4145 2272 2128 7 1389 548 151 59 0 chr4 105488482 105488601 -50141519 + Lx9 LINE L1 7518 7643 -1 7 1389 1068 289 68 102 chr4 105488723 105489358 -50140762 - RLTR18 LTR ERVK 0 616 4 7 1389 557 268 56 80 chr4 105489368 105489656 -50140464 + L1MA6 LINE L1 5874 6154 -146 7 1389 3834 166 14 14 chr4 105489682 105490347 -50139773 - RLTR17 LTR ERVK -27 665 1 7 1389 467 271 35 7 chr4 105490347 105490488 -50139632 + L1MA7 LINE L1 6139 6283 -8 7 1389 264 59 0 0 chr4 105490745 105490779 -50139341 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1389 192 135 0 0 chr4 105490804 105490841 -50139279 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1389 654 189 69 63 chr4 105490842 105490986 -50139134 + RMER10B LTR ERVL 190 341 -57 7 1389 437 0 0 19 chr4 105490986 105491040 -50139080 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 7 1389 654 189 69 63 chr4 105491040 105491070 -50139050 + RMER10B LTR ERVL 342 365 -33 7 1389 3533 39 12 2 chr4 105491269 105491680 -50138440 + L1Md_F3 LINE L1 6156 6570 -14 7 1389 1217 262 28 34 chr4 105493571 105493895 -50136225 - ORR1E LTR MaLR 0 359 38 7 1389 777 262 48 5 chr4 105493986 105494174 -50135946 + MER20 DNA MER1_type 19 214 -5 7 1389 301 289 76 42 chr4 105494333 105494452 -50135668 - MER5A DNA MER1_type -21 168 46 7 1389 39541 4 0 0 chr4 105494828 105500000 -50130120 + L1Md_A LINE L1 422 5594 -289 7 1389 9164 1 0 0 chr4 105500000 105500988 -50129132 + L1Md_A LINE L1 5595 6582 0 1 1389 387 344 86 38 chr4 105501234 105501548 -50128572 + LTR16A1 LTR ERVL 34 362 -94 2 1389 3485 182 26 54 chr4 105501758 105502337 -50127783 + Lx5 LINE L1 6381 6935 -115 3 1389 2726 176 156 8 chr4 105502337 105502869 -50127251 + RMER19C LTR ERVK 1 611 0 4 1389 3485 182 26 54 chr4 105502869 105502978 -50127142 + Lx5 LINE L1 6936 7050 0 3 1389 1271 263 58 65 chr4 105503609 105504088 -50126032 - RMER5 LTR ERV1 0 534 59 5 1389 381 340 61 20 chr4 105506430 105506628 -50123492 + MER2B DNA MER2_type 1 206 -130 6 1389 622 254 57 0 chr4 105506629 105506806 -50123314 - MER2B DNA MER2_type 0 336 150 7 1389 331 281 11 0 chr4 105506889 105506978 -50123142 + MER2B DNA MER2_type 205 294 -42 6 1389 423 0 0 0 chr4 105507052 105507099 -50123021 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1389 216 0 0 0 chr4 105508613 105508637 -50121483 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1389 1064 56 7 0 chr4 105508692 105508835 -50121285 + B2_Mm2 SINE B2 2 145 -50 1 1389 366 80 0 0 chr4 105508835 105508885 -50121235 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1389 1157 242 50 56 chr4 105508966 105509325 -50120795 - ORR1E LTR MaLR -2 357 1 1 1389 261 196 0 0 chr4 105510593 105510649 -50119471 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1390 360 348 0 0 chr4 105513336 105513448 -50116672 + PB1D10 SINE Alu 1 112 -5 1 1390 564 282 46 55 chr4 105513470 105513688 -50116432 + B3 SINE B2 1 216 0 1 1390 64 35 0 0 chr4 105513688 105513773 -50116347 + AT_rich Low_complexity Low_complexity 1 85 0 1 1390 832 258 91 19 chr4 105513993 105514258 -50115862 + MTD LTR MaLR 82 365 -54 1 1390 323 23 0 22 chr4 105515531 105515576 -50114544 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1 1390 368 99 0 66 chr4 105515576 105515652 -50114468 - Lx3A LINE L1 -13 6968 6898 1 1390 249 206 55 0 chr4 105516766 105516839 -50113281 - MTE2b LTR MaLR -27 352 276 2 1390 321 229 43 0 chr4 105516872 105516942 -50113178 - MTE2b LTR MaLR -297 82 10 2 1390 250 399 12 6 chr4 105516995 105517159 -50112961 + ERVL-E-int LTR ERVL 2766 2930 -2737 2 1390 544 291 16 91 chr4 105517379 105517621 -50112499 + B4A SINE B4 1 224 -68 2 1390 211 113 38 0 chr4 105517621 105517674 -50112446 + A-rich Low_complexity Low_complexity 4 58 0 2 1390 333 47 0 0 chr4 105517722 105517765 -50112355 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1390 322 274 98 66 chr4 105517777 105518056 -50112064 + RMER20A LTR ERVK 14 329 -187 2 1390 700 236 37 25 chr4 105519827 105519988 -50110132 + MTD LTR MaLR 138 300 -119 2 1390 1742 170 134 9 chr4 105520046 105520396 -50109724 - ORR1B1 LTR MaLR 0 394 1 2 1390 522 0 0 0 chr4 105520858 105520916 -50109204 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1390 439 215 0 0 chr4 105520948 105521027 -50109093 - RSINE1 SINE B4 -72 93 15 2 1390 387 0 0 0 chr4 105521974 105522017 -50108103 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1390 2116 52 7 15 chr4 105522703 105522974 -50107146 + L1Md_T LINE L1 6313 6581 -1 3 1390 308 359 32 13 chr4 105523115 105523273 -50106847 - LTR33 LTR ERVL -354 161 1 3 1390 336 293 64 35 chr4 105523447 105523620 -50106500 - L1MB3 LINE L1 -15 6168 5991 3 1390 244 321 36 0 chr4 105523688 105523800 -50106320 - L1MB4 LINE L1 -5265 1342 1227 3 1390 867 153 177 9 chr4 105524394 105524689 -50105431 + ORR1C2 LTR MaLR 2 367 0 3 1390 892 298 47 0 chr4 105525207 105525482 -50104638 - B4 SINE B4 -2 290 3 3 1390 281 368 59 48 chr4 105526641 105526912 -50103208 + B4 SINE B4 3 276 -16 3 1390 302 0 26 0 chr4 105526938 105526976 -50103144 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1390 448 16 33 0 chr4 105526976 105527037 -50103083 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 3 1390 28 71 0 0 chr4 105527062 105527118 -50103002 + AT_rich Low_complexity Low_complexity 1 56 0 4 1390 198 0 0 0 chr4 105527175 105527197 -50102923 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1390 729 278 31 5 chr4 105527791 105527986 -50102134 - B3 SINE B2 -15 201 2 4 1390 242 197 29 29 chr4 105528032 105528100 -50102020 + CT-rich Low_complexity Low_complexity 4 71 0 4 1390 457 239 6 6 chr4 105528146 105528306 -50101814 + GA-rich Low_complexity Low_complexity 1 160 0 4 1390 268 326 14 57 chr4 105528306 105528446 -50101674 + MLT1A LTR MaLR 229 362 -12 4 1390 561 217 195 77 chr4 105529155 105529494 -50100626 - MTE2a LTR MaLR 0 379 1 4 1390 459 0 0 0 chr4 105529501 105529552 -50100568 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1390 378 0 0 0 chr4 105529552 105529593 -50100527 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1390 793 311 80 37 chr4 105529626 105529977 -50100143 + MLT2B1 LTR ERVL 134 499 -21 4 1390 374 310 50 33 chr4 105530188 105530446 -50099674 + MLT2B4 LTR ERVL 1 260 -260 5 1390 234 156 0 0 chr4 105530566 105530611 -50099509 + CT-rich Low_complexity Low_complexity 3 47 0 5 1390 468 0 0 0 chr4 105534379 105534431 -50095689 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1390 344 274 189 26 chr4 105534442 105534633 -50095487 - MLT1A LTR MaLR -13 361 140 5 1390 366 308 9 0 chr4 105534649 105534756 -50095364 + B1F SINE Alu 21 128 -21 5 1390 286 308 97 8 chr4 105535008 105535142 -50094978 + ID_B1 SINE B4 78 223 -1 5 1390 3465 39 0 128 chr4 105535607 105536107 -50094013 - RLTR10C LTR ERVK 0 436 1 5 1390 422 303 35 15 chr4 105536572 105536773 -50093347 - L1M5 LINE L1 -1907 4239 4035 5 1390 462 298 104 55 chr4 105536777 105537084 -50093036 + ORR1E LTR MaLR 4 349 -30 5 1390 420 305 136 31 chr4 105537075 105537457 -50092663 + BLACKJACK DNA AcHobo 728 1149 -1795 5 1390 350 277 129 22 chr4 105537933 105538158 -50091962 + BLACKJACK DNA AcHobo 1708 1956 -988 5 1390 238 315 32 0 chr4 105538159 105538249 -50091871 + PB1D10 SINE Alu 2 96 -53 6 1390 236 217 32 11 chr4 105538376 105538469 -50091651 + GA-rich Low_complexity Low_complexity 4 98 0 6 1390 386 331 41 0 chr4 105538486 105538658 -50091462 + BLACKJACK DNA AcHobo 1975 2153 -791 5 1390 480 200 0 0 chr4 105538658 105538763 -50091357 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1390 774 311 21 4 chr4 105538781 105539023 -50091097 + ORR1E-int LTR MaLR 1031 1276 -304 6 1390 2782 164 118 29 chr4 105539165 105539782 -50090338 + RLTR33 LTR ERVK 7 678 0 6 1390 760 284 29 51 chr4 105539782 105539813 -50090307 + ORR1E-int LTR MaLR 1286 1315 -265 6 1390 4159 128 58 12 chr4 105539813 105540536 -50089584 + RMER6A LTR ERVK 1 756 0 6 1390 760 284 29 51 chr4 105540536 105540753 -50089367 + ORR1E-int LTR MaLR 1316 1528 -52 6 1390 704 316 82 21 chr4 105540753 105541044 -50089076 + ORR1E LTR MaLR 2 310 -49 6 1390 254 165 195 23 chr4 105541111 105541198 -50088922 + L1MA6 LINE L1 5631 5732 -559 6 1390 326 316 143 10 chr4 105541230 105541537 -50088583 + L1MA6 LINE L1 5797 6144 -156 6 1390 247 191 63 0 chr4 105541662 105541725 -50088395 + L1MA6 LINE L1 6226 6292 -8 6 1390 29 28 0 0 chr4 105541840 105541876 -50088244 + AT_rich Low_complexity Low_complexity 1 36 0 6 1390 639 271 33 7 chr4 105542369 105542502 -50087618 + RSINE1 SINE B4 3 139 -26 6 1390 699 12 0 0 chr4 105542502 105542582 -50087538 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 1390 639 271 33 7 chr4 105542582 105542600 -50087520 + RSINE1 SINE B4 140 157 -8 6 1390 994 241 264 0 chr4 105543525 105543873 -50086247 - MT2A LTR ERVL 0 533 94 7 1390 410 217 150 21 chr4 105543885 105544019 -50086101 - MT2A LTR ERVL -448 136 1 7 1390 250 331 36 149 chr4 105544203 105544329 -50085791 - MLT1A0 LTR MaLR -67 307 207 7 1390 918 242 5 27 chr4 105544329 105544550 -50085570 - B3 SINE B2 0 216 1 7 1390 294 235 242 3 chr4 105544550 105544699 -50085421 - MLT1A0 LTR MaLR -168 206 12 7 1390 509 135 0 11 chr4 105545268 105545358 -50084762 + (GGA)n Simple_repeat Simple_repeat 3 91 0 7 1390 519 265 64 12 chr4 105546600 105546772 -50083348 - RMER30 DNA MER1_type -7 195 15 7 1390 273 312 54 18 chr4 105547078 105547189 -50082931 - L1M5 LINE L1 -3494 2652 2538 7 1390 671 284 21 19 chr4 105547189 105547409 -50082711 + MLT2B4 LTR ERVL 5 229 -185 7 1390 405 0 0 0 chr4 105547717 105547762 -50082358 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1390 2287 253 82 33 chr4 105547926 105548714 -50081406 - RCHARR1 DNA MER1_type 0 974 148 7 1390 247 254 0 43 chr4 105548745 105548815 -50081305 - MLT1A LTR MaLR -161 204 138 7 1390 2420 210 54 9 chr4 105548816 105549278 -50080842 + RLTR20A2 LTR ERVK 1 488 -90 8 1390 396 0 0 0 chr4 105549278 105549322 -50080798 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1390 2420 210 54 9 chr4 105549322 105549398 -50080722 + RLTR20A2 LTR ERVK 489 562 -16 8 1390 367 317 35 7 chr4 105549390 105549533 -50080587 - MLT1A LTR MaLR -223 151 5 7 1390 541 252 24 77 chr4 105550474 105550642 -50079478 + RSINE1 SINE B4 7 165 0 8 1390 25 0 0 0 chr4 105550685 105550710 -50079410 + AT_rich Low_complexity Low_complexity 1 25 0 8 1390 266 353 68 23 chr4 105550794 105551104 -50079016 + L1M5 LINE L1 4786 5109 -1037 8 1390 208 224 35 0 chr4 105551432 105551490 -50078630 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1390 797 254 171 14 chr4 105553556 105553836 -50076284 + MLT1A1 LTR MaLR 1 324 -84 8 1390 1208 214 103 0 chr4 105554089 105554213 -50075907 - Lx5 LINE L1 0 7050 6900 8 1390 306 0 0 0 chr4 105554213 105554247 -50075873 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1390 1208 214 103 0 chr4 105554247 105554403 -50075717 - Lx5 LINE L1 -151 6899 6742 8 1390 337 344 79 35 chr4 105554600 105554802 -50075318 - LTR16C LTR ERVL -100 389 179 8 1390 231 275 75 0 chr4 105554873 105554953 -50075167 - MER81 DNA AcHobo -8 106 21 9 1390 800 164 7 33 chr4 105555488 105555639 -50074481 - B1_Mus1 SINE Alu 0 148 2 9 1390 24 0 0 0 chr4 105555682 105555706 -50074414 + AT_rich Low_complexity Low_complexity 1 24 0 9 1390 360 0 0 0 chr4 105556274 105556314 -50073806 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1390 596 237 108 41 chr4 105556358 105556626 -50073494 - B4A SINE B4 -6 286 1 9 1390 193 111 0 0 chr4 105556713 105556740 -50073380 - MIR SINE MIR -18 244 218 9 1390 237 207 0 19 chr4 105557405 105557457 -50072663 + MIR SINE MIR 105 162 -114 9 1390 183 42 0 0 chr4 105558153 105558177 -50071943 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9 1390 1027 255 0 0 chr4 105559902 105560114 -50070006 + B3 SINE B2 5 216 0 9 1390 27 49 0 0 chr4 105561181 105561222 -50068898 + AT_rich Low_complexity Low_complexity 1 41 0 9 1390 289 275 0 0 chr4 105561949 105562018 -50068102 - ID4_ SINE ID -62 90 22 1 1390 698 144 0 31 chr4 105562048 105562177 -50067943 - L1Md_F2 LINE L1 0 6582 6458 1 1390 286 364 68 27 chr4 105564117 105564264 -50065856 - LTR33A LTR ERVL -349 171 19 1 1390 1876 183 139 12 chr4 105565976 105566379 -50063741 - Lx7 LINE L1 -489 7207 6754 1 1390 1622 201 74 30 chr4 105566372 105566834 -50063286 + Lx7 LINE L1 7215 7696 0 1 1390 21 36 0 0 chr4 105566835 105566863 -50063257 + AT_rich Low_complexity Low_complexity 1 28 0 1 1390 479 254 8 23 chr4 105568848 105568981 -50061139 - MER20 DNA MER1_type -1 218 88 1 1390 852 39 0 0 chr4 105569503 105569607 -50060513 + (CTTTG)n Simple_repeat Simple_repeat 1 104 0 1 1390 213 344 90 36 chr4 105569866 105570032 -50060088 - MIRb SINE MIR -79 189 15 1 1390 1089 214 105 16 chr4 105570107 105570380 -50059740 + MTE2b LTR MaLR 1 285 -94 1 1390 3159 44 0 3 chr4 105571536 105571921 -50058199 - L1Md_F3 LINE L1 0 6584 6201 1 1390 599 279 128 16 chr4 105571921 105572172 -50057948 + ERVL-B4-int LTR ERVL 3336 3614 -2100 1 1390 2475 199 36 8 chr4 105572723 105573225 -50056895 - RMER20A LTR ERVK 0 516 1 1 1390 512 280 14 34 chr4 105573379 105573527 -50056593 + RSINE1 SINE B4 2 146 -19 1 1390 188 67 0 32 chr4 105573539 105573570 -50056550 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1390 499 319 31 16 chr4 105574003 105574194 -50055926 + B3A SINE B2 5 198 0 1 1390 581 253 97 11 chr4 105574578 105574754 -50055366 + B3A SINE B2 4 194 -4 1 1390 432 51 0 0 chr4 105578400 105578459 -50051661 + (TAGG)n Simple_repeat Simple_repeat 4 62 0 1 1390 357 208 0 0 chr4 105578467 105578539 -50051581 - PB1D9 SINE Alu -8 112 41 1 1390 413 329 95 36 chr4 105578717 105578938 -50051182 - MLT1H LTR MaLR -208 341 108 1 1390 189 318 98 63 chr4 105579508 105579713 -50050407 - MIRb SINE MIR -3 265 54 1 1390 357 162 0 0 chr4 105580738 105580806 -50049314 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1390 468 0 0 0 chr4 105580806 105580858 -50049262 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1390 198 224 52 0 chr4 105581462 105581520 -50048600 + L2c LINE L2 3250 3310 -77 1 1390 423 0 0 0 chr4 105581893 105581940 -50048180 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1390 351 0 0 0 chr4 105581940 105581978 -50048142 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1390 522 232 0 0 chr4 105582946 105583084 -50047036 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1390 624 62 0 0 chr4 105584143 105584224 -50045896 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 1 1390 247 333 25 8 chr4 105585582 105585703 -50044417 + CT-rich Low_complexity Low_complexity 1 123 0 1 1390 405 0 0 0 chr4 105585821 105585866 -50044254 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1390 260 303 0 13 chr4 105586149 105586226 -50043894 + B4A SINE B4 1 76 -216 1 1390 2506 137 44 15 chr4 105586312 105586721 -50043399 - MTC LTR MaLR 0 421 1 1 1390 642 60 0 0 chr4 105586794 105586877 -50043243 + (CATA)n Simple_repeat Simple_repeat 2 84 0 1 1390 397 254 26 26 chr4 105587454 105587567 -50042553 - LTR16A LTR ERVL -332 119 7 1 1390 1330 133 36 5 chr4 105587976 105588195 -50041925 + URR1A DNA MER1_type 1 226 0 1 1390 241 318 64 27 chr4 105588684 105588794 -50041326 + L2c LINE L2 3273 3386 -1 1 1390 1085 280 62 32 chr4 105590122 105590524 -50039596 + MLT2C2 LTR ERVL 1 414 -50 1 1390 950 137 52 0 chr4 105590524 105590771 -50039349 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 1 1390 736 40 20 0 chr4 105590785 105590885 -50039235 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 1 1390 8694 21 1 0 chr4 105592132 105593524 -50036596 - L1Md_T LINE L1 0 6582 5189 1 1390 447 336 0 0 chr4 105593526 105593660 -50036460 + MER58A DNA MER1_type 45 178 -46 1 1390 181 250 0 55 chr4 105593742 105593797 -50036323 - MIRm SINE MIR -4 272 221 1 1390 243 0 0 0 chr4 105595775 105595802 -50034318 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1390 211 318 79 11 chr4 105596451 105596540 -50033580 - MIRm SINE MIR -123 153 59 1 1390 570 317 64 19 chr4 105596844 105597111 -50033009 - B4A SINE B4 -13 279 1 1 1390 207 269 60 0 chr4 105598720 105598787 -50031333 - MIRc SINE MIR -52 216 146 1 1390 244 233 67 0 chr4 105599095 105599185 -50030935 - MER3 DNA MER1_type -21 188 93 1 1390 906 242 169 32 chr4 105600952 105601306 -50028814 + MTD LTR MaLR 10 417 -2 1 1390 261 83 0 0 chr4 105601538 105601574 -50028546 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 1 1390 315 0 0 0 chr4 105602976 105603011 -50027109 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1390 564 290 16 95 chr4 105603943 105604259 -50025861 - B4A SINE B4 0 292 2 1 1390 426 235 0 89 chr4 105604371 105604483 -50025637 + RSINE1 SINE B4 1 102 -63 1 1390 299 271 47 6 chr4 105604621 105604792 -50025328 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1390 227 285 132 0 chr4 105605017 105605168 -50024952 + L1ME1 LINE L1 4105 4275 -1871 1 1390 25 0 0 0 chr4 105605187 105605212 -50024908 + AT_rich Low_complexity Low_complexity 1 25 0 1 1390 316 353 26 26 chr4 105605212 105605407 -50024713 + L1ME1 LINE L1 4396 4590 -1556 1 1390 428 192 76 9 chr4 105605699 105605804 -50024316 + B1_Mur1 SINE Alu 30 141 -8 1 1390 931 231 54 0 chr4 105606550 105606753 -50023367 + B3 SINE B2 3 216 0 1 1390 659 249 92 37 chr4 105606801 105607072 -50023048 + B4A SINE B4 4 289 -3 1 1390 256 306 127 100 chr4 105607210 105607690 -50022430 + L1ME1 LINE L1 5275 5767 -406 1 1390 309 304 81 31 chr4 105607765 105608009 -50022111 + L1ME1 LINE L1 5879 6140 -39 1 1390 608 219 8 0 chr4 105608027 105608150 -50021970 + B3A SINE B2 9 132 -66 1 1390 513 0 0 0 chr4 105608175 105608232 -50021888 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1390 188 297 94 0 chr4 105608935 105608999 -50021121 - L3b LINE CR1 -267 215 146 1 1390 437 195 195 0 chr4 105609168 105609286 -50020834 - B3 SINE B2 -75 141 1 1 1390 742 269 6 0 chr4 105609338 105609498 -50020622 - B3A SINE B2 -33 165 5 1 1390 1275 76 0 0 chr4 105611907 105612079 -50018041 + (GGGA)n Simple_repeat Simple_repeat 2 173 0 1 1390 204 204 48 34 chr4 105612084 105612231 -50017889 + GA-rich Low_complexity Low_complexity 5 153 0 1 1390 319 228 35 29 chr4 105612820 105612992 -50017128 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 1 1390 182 323 135 0 chr4 105613021 105613117 -50017003 - MIRb SINE MIR -16 252 144 1 1390 287 234 0 0 chr4 105613690 105613754 -50016366 + PB1D10 SINE Alu 46 109 -8 1 1390 273 89 0 0 chr4 105614927 105614972 -50015148 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1390 260 243 21 39 chr4 105615278 105615380 -50014740 - MIRb SINE MIR -101 167 61 1 1390 1000 179 5 0 chr4 105615947 105616142 -50013978 + ORR1B1-int LTR MaLR 898 1093 -416 1 1390 1389 134 4 4 chr4 105616142 105616382 -50013738 + ORR1B1-int LTR MaLR 1264 1503 -6 1 1390 395 123 198 0 chr4 105616382 105616463 -50013657 + ORR1B1 LTR MaLR 1 97 -297 1 1390 378 0 0 0 chr4 105617166 105617208 -50012912 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1390 216 257 13 26 chr4 105617210 105617286 -50012834 + T-rich Low_complexity Low_complexity 5 79 0 1 1390 310 318 55 26 chr4 105618399 105618879 -50011241 + L1ME1 LINE L1 5542 6059 -125 1 1390 434 312 7 28 chr4 105619436 105619578 -50010542 - RSINE1 SINE B4 -15 150 12 1 1390 365 293 0 0 chr4 105619996 105620078 -50010042 + ID4_ SINE ID 2 83 0 1 1390 273 146 0 0 chr4 105623378 105623426 -50006694 + (ATG)n Simple_repeat Simple_repeat 2 49 0 1 1390 304 225 0 0 chr4 105624327 105624398 -50005722 + MLT1I LTR MaLR 326 396 -15 1 1390 267 253 75 12 chr4 105625586 105625666 -50004454 - MIR3 SINE MIR -109 99 15 1 1390 1776 120 39 13 chr4 105626218 105626530 -50003590 - ORR1A4 LTR MaLR -8 321 2 1 1390 600 301 58 49 chr4 105627279 105627604 -50002516 + MER44A DNA MER2_type 9 336 -3 1 1390 2908 144 73 97 chr4 105627721 105628320 -50001800 - RMER4B LTR ERVK 0 585 1 1 1390 205 363 57 52 chr4 105628436 105628648 -50001472 - MIR SINE MIR -32 230 18 1 1390 286 266 56 99 chr4 105629352 105629494 -50000626 + RMER5 LTR ERV1 354 489 -45 1 1390 351 0 0 0 chr4 105629538 105629577 -50000543 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1390 623 225 0 8 chr4 105629577 105629707 -50000413 - RSINE1 SINE B4 -25 140 12 1 1390 229 329 78 50 chr4 105629717 105629935 -50000185 - MIRb SINE MIR -44 224 1 1 1390 247 329 70 6 chr4 105630013 105630169 -49999951 + MER5C DNA MER1_type 82 247 -66 1 1390 357 226 0 0 chr4 105631410 105631494 -49998626 + T-rich Low_complexity Low_complexity 1 84 0 1 1390 363 322 153 38 chr4 105632088 105632375 -49997745 + MER21B LTR ERV1 231 550 -313 1 1390 339 342 17 0 chr4 105632404 105632521 -49997599 + MER21B LTR ERV1 606 724 -139 1 1390 254 256 40 57 chr4 105632601 105632725 -49997395 - MLT1A LTR MaLR 0 374 253 1 1390 281 238 47 23 chr4 105632903 105632989 -49997131 - MLT1A1 LTR MaLR -16 392 305 1 1390 197 320 31 87 chr4 105634667 105634828 -49995292 - MIRb SINE MIR -81 187 36 1 1390 682 50 20 0 chr4 105637858 105637957 -49992163 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1390 380 238 0 0 chr4 105638018 105638088 -49992032 + PB1D10 SINE Alu 2 71 -46 1 1390 3198 137 52 70 chr4 105638088 105638742 -49991378 - RLTR26 LTR ERVK 0 642 1 1 1390 247 139 0 0 chr4 105638742 105638777 -49991343 + PB1D10 SINE Alu 66 100 -17 1 1390 590 250 67 59 chr4 105639883 105640138 -49989982 - MLT1B LTR MaLR -16 374 118 1 1390 336 48 0 0 chr4 105640424 105640466 -49989654 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1 1390 255 319 8 103 chr4 105640551 105640677 -49989443 - MIRc SINE MIR -82 186 73 1 1390 23 0 0 0 chr4 105641043 105641066 -49989054 + AT_rich Low_complexity Low_complexity 1 23 0 1 1390 369 0 0 0 chr4 105641341 105641382 -49988738 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1390 213 309 0 87 chr4 105641390 105641493 -49988627 + MIRb SINE MIR 75 168 -100 1 1390 186 128 0 0 chr4 105641553 105641592 -49988528 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1390 186 234 77 13 chr4 105641794 105641872 -49988248 - MIRb SINE MIR -31 237 155 1 1390 5713 69 3 0 chr4 105643067 105643780 -49986340 + L1_Mus1 LINE L1 5853 6567 0 2 1391 336 256 0 24 chr4 105645392 105645476 -49984644 - ID4_ SINE ID 0 83 2 2 1391 390 262 36 58 chr4 105645505 105645643 -49984477 - B1F1 SINE Alu -5 144 10 2 1391 527 0 16 0 chr4 105645664 105645727 -49984393 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1391 517 318 33 0 chr4 105645727 105645878 -49984242 - RSINE1 SINE B4 -8 157 2 2 1391 248 293 154 8 chr4 105645977 105646094 -49984026 - MER112 DNA MER1_type -90 171 38 2 1391 387 0 0 0 chr4 105646279 105646322 -49983798 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1391 242 294 42 32 chr4 105646812 105646907 -49983213 + MIRm SINE MIR 68 163 -113 2 1391 1231 34 7 0 chr4 105647043 105647189 -49982931 + B1_Mus2 SINE Alu 1 147 0 2 1391 189 0 0 0 chr4 105647456 105647477 -49982643 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1391 195 368 17 17 chr4 105647610 105647729 -49982391 + L2c LINE L2 3023 3141 -246 2 1391 644 307 45 27 chr4 105648255 105648476 -49981644 - 7SK RNA RNA -91 240 16 2 1391 426 292 0 17 chr4 105648527 105648642 -49981478 - PB1D7 SINE Alu -6 114 2 2 1391 585 270 75 2 chr4 105648915 105649112 -49981008 + B3A SINE B2 4 216 0 2 1391 355 281 329 34 chr4 105651424 105651775 -49978345 - MLT2B2 LTR ERVL 0 562 108 2 1391 332 372 89 22 chr4 105653440 105653753 -49976367 - Arthur1B DNA Tip100 -868 357 24 2 1391 236 251 148 76 chr4 105654054 105654304 -49975816 - L2a LINE L2 -4 3422 3155 2 1391 2016 120 3 6 chr4 105654744 105655063 -49975057 - ORR1A3 LTR MaLR -8 318 1 2 1391 267 283 133 0 chr4 105655497 105655617 -49974503 + MIR3 SINE MIR 43 178 -30 2 1391 263 246 121 81 chr4 105656729 105656853 -49973267 + ORR1E LTR MaLR 82 210 -149 2 1391 215 303 0 0 chr4 105657141 105657207 -49972913 + RSINE1 SINE B4 42 107 -58 2 1391 414 0 0 0 chr4 105657209 105657255 -49972865 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1391 234 0 0 0 chr4 105657256 105657282 -49972838 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1391 691 310 144 7 chr4 105657291 105657733 -49972387 + Lx8 LINE L1 5282 5790 -510 2 1391 275 26 51 0 chr4 105657733 105657772 -49972348 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 1391 691 252 75 54 chr4 105657772 105657921 -49972199 + Lx8 LINE L1 5772 5906 -1567 2 1391 899 258 99 48 chr4 105658146 105658500 -49971620 + Lx8 LINE L1 7041 7412 -61 2 1391 256 320 30 0 chr4 105658568 105658668 -49971452 + RMER1C Other Other 1223 1325 -17 2 1391 940 248 135 33 chr4 105658683 105659113 -49971007 + L1ME2 LINE L1 5417 5890 -274 2 1391 727 327 59 10 chr4 105659124 105659427 -49970693 + MER2 DNA MER2_type 2 319 -26 2 1391 21 0 0 0 chr4 105660125 105660146 -49969974 + AT_rich Low_complexity Low_complexity 1 21 0 2 1391 252 279 73 0 chr4 105661877 105661945 -49968175 - LTR16A LTR ERVL -374 77 5 2 1391 536 326 82 41 chr4 105662537 105662729 -49967391 + MLT1C LTR MaLR 4 205 -262 2 1391 186 43 0 0 chr4 105662729 105662752 -49967368 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1391 536 326 82 41 chr4 105662752 105662850 -49967270 + MLT1C LTR MaLR 206 305 -162 2 1391 344 266 28 21 chr4 105662850 105662992 -49967128 + L1MB2 LINE L1 5553 5695 -488 2 1391 279 114 0 0 chr4 105663011 105663055 -49967065 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 2 1391 840 318 28 10 chr4 105663183 105663577 -49966543 + L1MB2 LINE L1 5718 6118 -53 2 1391 210 118 0 0 chr4 105663637 105663671 -49966449 + (GGA)n Simple_repeat Simple_repeat 3 36 0 2 1391 569 287 0 0 chr4 105664040 105664183 -49965937 + MTEa LTR MaLR 5 147 -232 2 1391 383 236 40 120 chr4 105664205 105664294 -49965826 + RSINE1 SINE B4 11 95 -70 2 1391 2375 178 9 5 chr4 105664294 105664724 -49965396 + Lx LINE L1 6222 6653 -1 2 1391 383 236 40 120 chr4 105664724 105664759 -49965361 + RSINE1 SINE B4 96 125 -40 2 1391 33 0 0 0 chr4 105664783 105664816 -49965304 + AT_rich Low_complexity Low_complexity 1 33 0 2 1391 355 282 7 14 chr4 105664944 105665019 -49965101 + MT2A LTR ERVL 391 464 -69 2 1391 863 99 35 6 chr4 105665019 105665192 -49964928 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1391 355 282 7 14 chr4 105665192 105665260 -49964860 + MT2A LTR ERVL 465 532 -1 2 1391 585 268 5 26 chr4 105665652 105665847 -49964273 - MER121 Unknown Unknown -73 339 149 2 1391 253 274 0 16 chr4 105666340 105666403 -49963717 - RSINE1 SINE B4 -55 110 49 2 1391 711 171 25 93 chr4 105666454 105666615 -49963505 + B1_Mur4 SINE Alu 1 150 0 2 1391 449 17 17 0 chr4 105666630 105666688 -49963432 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1391 451 266 174 55 chr4 105668076 105668295 -49961825 + MLT1B LTR MaLR 70 314 -76 2 1391 205 274 0 0 chr4 105669127 105669178 -49960942 + MIR SINE MIR 94 144 -64 2 1391 265 295 58 78 chr4 105669199 105669302 -49960818 + MLT1J1 LTR MaLR 32 132 -312 2 1391 1097 123 6 0 chr4 105669367 105669546 -49960574 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1391 393 117 0 0 chr4 105669546 105669606 -49960514 + (TTC)n Simple_repeat Simple_repeat 1 60 0 2 1391 405 334 83 26 chr4 105670867 105671149 -49958971 - L2a LINE L2 -121 3266 2963 2 1391 312 27 0 0 chr4 105671260 105671297 -49958823 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1391 659 326 43 86 chr4 105671336 105671685 -49958435 - ORR1E LTR MaLR -25 334 1 2 1391 358 327 123 12 chr4 105672538 105672708 -49957412 - MIRb SINE MIR -44 224 36 2 1391 209 328 84 50 chr4 105673388 105673590 -49956530 - MIRb SINE MIR -46 222 14 2 1391 238 239 28 0 chr4 105675500 105675571 -49954549 + MLT1F LTR MaLR 390 462 -86 2 1391 308 286 41 74 chr4 105676553 105676578 -49953542 - PB1D7 SINE Alu -1 119 3 2 1391 461 208 83 0 chr4 105676578 105676674 -49953446 - ID_B1 SINE B4 -37 187 84 2 1391 227 276 0 106 chr4 105676608 105676693 -49953427 + YREP_Mm Unknown Unknown 249 324 -1488 2 1391 277 291 12 25 chr4 105676700 105676781 -49953339 - ID4_ SINE ID -2 81 2 2 1391 442 337 38 109 chr4 105677245 105677585 -49952535 + ORR1E LTR MaLR 44 359 0 2 1391 217 306 58 16 chr4 105678094 105678220 -49951900 + L2b LINE L2 2977 3117 -270 2 1391 582 176 0 0 chr4 105678938 105679091 -49951029 + CT-rich Low_complexity Low_complexity 2 154 0 2 1391 351 0 0 0 chr4 105679091 105679130 -49950990 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1391 522 228 57 6 chr4 105679761 105679937 -49950183 + L1_Mur3 LINE L1 5161 5354 -526 2 1391 904 227 132 147 chr4 105679953 105680361 -49949759 + MTD LTR MaLR 18 419 0 2 1391 1260 255 50 13 chr4 105680363 105680492 -49949628 + L1_Mur3 LINE L1 5372 5504 -376 2 1391 180 0 0 0 chr4 105680492 105680512 -49949608 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 1391 1260 255 50 13 chr4 105680512 105680763 -49949357 + L1_Mur3 LINE L1 5505 5765 -115 2 1391 264 254 0 0 chr4 105680839 105680894 -49949226 + MLT1C LTR MaLR 209 263 -204 2 1391 290 184 8 15 chr4 105680988 105681053 -49949067 + MLT1C LTR MaLR 414 488 -17 2 1391 252 0 0 0 chr4 105681411 105681439 -49948681 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2 1391 655 211 20 34 chr4 105681455 105681602 -49948518 - RSINE1 SINE B4 -19 146 2 2 1391 317 401 45 1 chr4 105682279 105682472 -49947648 + LTR33C LTR ERVL 32 232 -396 2 1391 842 214 25 0 chr4 105682629 105682788 -49947332 + RSINE1 SINE B4 3 165 0 2 1391 991 215 20 5 chr4 105682825 105683026 -49947094 - B3 SINE B2 -12 204 1 2 1391 357 291 97 58 chr4 105683047 105683362 -49946758 - MER57C2 LTR ERV1 -29 405 13 2 1391 282 29 0 0 chr4 105684135 105684170 -49945950 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1391 1029 136 59 6 chr4 105684172 105684342 -49945778 - B2_Mm2 SINE B2 -16 179 1 2 1391 539 263 113 116 chr4 105684569 105684862 -49945258 - B4A SINE B4 0 292 1 2 1391 190 186 23 0 chr4 105685034 105685077 -49945043 + MIRc SINE MIR 117 160 -108 2 1391 221 304 93 51 chr4 105685058 105685176 -49944944 - MIR3 SINE MIR -73 135 13 2 1391 798 326 134 42 chr4 105685559 105686013 -49944107 - MLT1D LTR MaLR -9 496 1 2 1391 438 353 28 17 chr4 105686133 105686309 -49943811 - MER45A DNA Tip100 0 178 1 2 1391 275 336 52 26 chr4 105686319 105686435 -49943685 + MIRb SINE MIR 63 181 -87 2 1391 697 290 40 73 chr4 105686450 105686725 -49943395 - MLT1C LTR MaLR -14 453 188 2 1391 813 150 0 0 chr4 105686726 105686873 -49943247 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 1391 737 250 100 19 chr4 105686897 105687166 -49942954 + L1MA5 LINE L1 6010 6300 0 2 1391 540 299 47 35 chr4 105687176 105687408 -49942712 + Lx9 LINE L1 7197 7431 -213 2 1391 530 183 9 0 chr4 105687408 105687523 -49942597 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1391 194 309 153 47 chr4 105687853 105688023 -49942097 + MIRb SINE MIR 35 222 -46 2 1391 207 188 0 0 chr4 105688052 105688100 -49942020 + (CCTTG)n Simple_repeat Simple_repeat 5 52 0 2 1391 22 0 0 0 chr4 105688635 105688657 -49941463 + GC_rich Low_complexity Low_complexity 1 22 0 2 1391 185 317 0 16 chr4 105688869 105688930 -49941190 + MIRm SINE MIR 102 161 -115 2 1391 475 291 164 56 chr4 105688992 105689062 -49941058 - ORR1E LTR MaLR 0 374 283 2 1391 1816 166 119 13 chr4 105689062 105689440 -49940680 + MTD LTR MaLR 2 419 0 2 1391 475 291 164 56 chr4 105689440 105689693 -49940427 - ORR1E LTR MaLR -80 294 16 2 1391 267 239 45 0 chr4 105689725 105689792 -49940328 + MIRc SINE MIR 77 146 -122 2 1391 232 333 82 20 chr4 105690204 105690302 -49939818 - L2c LINE L2 -20 3367 3264 2 1391 207 227 0 25 chr4 105690399 105690448 -49939672 - L2c LINE L2 -18 3369 3310 2 1391 277 340 70 7 chr4 105690821 105690963 -49939157 - MamRep4096 DNA hAT? -27 399 249 2 1391 181 256 90 79 chr4 105691709 105691798 -49938322 - MIR SINE MIR -165 97 8 2 1391 180 0 0 0 chr4 105693803 105693823 -49936297 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1391 1015 180 26 0 chr4 105694658 105694851 -49935269 - URR1B DNA MER1_type 0 225 2 2 1391 300 247 75 11 chr4 105695149 105695243 -49934877 + L2b LINE L2 3109 3208 -167 3 1391 615 264 81 107 chr4 105695463 105695810 -49934310 - ORR1E LTR MaLR -20 339 2 3 1391 1111 131 10 45 chr4 105695936 105696136 -49933984 + B2_Mm2 SINE B2 1 193 -2 3 1391 688 281 60 47 chr4 105697290 105697666 -49932454 - LTR37B LTR ERV1 -9 459 102 3 1391 290 264 112 53 chr4 105697691 105697843 -49932277 + MER58A DNA MER1_type 46 206 -18 3 1391 288 200 37 18 chr4 105699226 105699389 -49930731 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 1391 224 299 13 13 chr4 105699415 105699493 -49930627 - MIRc SINE MIR -124 144 67 3 1391 180 355 47 55 chr4 105699783 105699911 -49930209 + MIRm SINE MIR 109 235 -41 3 1391 410 300 77 20 chr4 105700236 105700420 -49929700 + MLT1I LTR MaLR 26 262 -250 3 1391 330 26 0 0 chr4 105700671 105700710 -49929410 + (CTG)n Simple_repeat Simple_repeat 1 39 0 3 1391 257 339 86 31 chr4 105701451 105701579 -49928541 - L2b LINE L2 -260 3115 2981 3 1391 221 337 157 28 chr4 105701746 105702134 -49927986 - L2b LINE L2 -704 2715 2278 3 1391 1174 234 92 32 chr4 105702265 105702613 -49927507 + ORR1D2 LTR MaLR 1 369 -1 3 1391 325 311 114 64 chr4 105702670 105702890 -49927230 + L1ME1 LINE L1 5947 6177 -2 3 1391 749 227 0 0 chr4 105702972 105703113 -49927007 - B1_Mur1 SINE Alu -8 141 1 3 1391 537 16 0 0 chr4 105703331 105703393 -49926727 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 3 1391 989 265 49 61 chr4 105703444 105703790 -49926330 - ORR1E LTR MaLR -17 342 1 3 1391 847 252 262 10 chr4 105703815 105704208 -49925912 - MLT2B4 LTR ERVL -62 494 3 3 1391 851 256 223 10 chr4 105704385 105704681 -49925439 + ORR1E LTR MaLR 1 359 0 3 1391 516 263 98 49 chr4 105705252 105705416 -49924704 + Lx5 LINE L1 6160 6331 -719 3 1391 814 327 47 29 chr4 105705430 105705773 -49924347 + Lx5 LINE L1 6506 6854 -196 3 1391 2382 89 48 24 chr4 105705977 105706355 -49923765 - Lx LINE L1 -3 6651 6265 3 1391 7947 132 9 2 chr4 105706356 105707634 -49922486 - L1_Mur2 LINE L1 -558 5319 4033 3 1391 208 100 24 24 chr4 105707729 105707770 -49922350 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1391 357 323 14 86 chr4 105707812 105707951 -49922169 - MLT2B4 LTR ERVL -325 231 103 3 1391 332 231 13 133 chr4 105707953 105708103 -49922017 + RMER15 LTR ERVL 4 135 -440 3 1391 608 299 127 26 chr4 105708133 105708401 -49921719 + RMER15 LTR ERVL 279 573 -2 3 1391 28 29 0 0 chr4 105708499 105708534 -49921586 + AT_rich Low_complexity Low_complexity 1 35 0 3 1391 423 325 70 13 chr4 105708883 105709039 -49921081 - LTR16A LTR ERVL -270 181 17 3 1391 2339 173 113 4 chr4 105709272 105709731 -49920389 - RLTR28 LTR ERVL -14 510 2 3 1391 294 289 169 143 chr4 105709914 105710193 -49919927 - ORR1E LTR MaLR -4 355 70 3 1391 231 291 11 65 chr4 105710228 105710320 -49919800 - ORR1E LTR MaLR -281 89 3 3 1391 302 331 52 39 chr4 105710597 105710751 -49919369 + MLT1L LTR MaLR 449 604 -6 3 1391 235 302 120 8 chr4 105711775 105711892 -49918228 + ORR1E LTR MaLR 8 137 -222 3 1391 264 271 0 43 chr4 105712259 105712444 -49917676 + (CCCA)n Simple_repeat Simple_repeat 3 179 0 3 1391 876 53 0 0 chr4 105713461 105713575 -49916545 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1391 318 270 0 0 chr4 105714016 105714079 -49916041 - B1F1 SINE Alu -86 63 1 3 1391 300 349 35 62 chr4 105714177 105714403 -49915717 - MIRb SINE MIR 0 268 49 3 1391 42 36 0 0 chr4 105714466 105714522 -49915598 + AT_rich Low_complexity Low_complexity 1 56 0 3 1391 1154 43 0 0 chr4 105714563 105714701 -49915419 + B1_Mm SINE Alu 4 141 -6 3 1391 288 0 0 0 chr4 105714703 105714735 -49915385 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1391 2184 252 85 7 chr4 105714964 105715516 -49914604 + Lx8 LINE L1 6704 7298 -175 3 1391 306 231 141 0 chr4 105715555 105715633 -49914487 + Lx8 LINE L1 7383 7471 -2 3 1391 681 328 75 29 chr4 105716034 105716408 -49913712 + LTR40b LTR ERVL 124 515 -4 3 1391 333 305 23 38 chr4 105716545 105716678 -49913442 + MER94 DNA AcHobo 4 134 0 3 1391 220 310 32 81 chr4 105716817 105716940 -49913180 + MIR SINE MIR 89 205 -57 3 1391 259 150 33 0 chr4 105717677 105717737 -49912383 + GA-rich Low_complexity Low_complexity 1 62 0 3 1391 225 257 46 65 chr4 105718319 105718427 -49911693 - MTA_Mm LTR MaLR -124 272 167 3 1391 492 18 0 0 chr4 105718615 105718672 -49911448 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1391 1311 75 17 6 chr4 105718674 105718847 -49911273 - B2_Mm2 SINE B2 -19 176 2 3 1391 269 213 12 89 chr4 105720080 105720166 -49909954 - MLT1A1 LTR MaLR -22 386 276 3 1391 325 283 98 24 chr4 105720842 105720965 -49909155 - MIR SINE MIR -57 205 74 3 1391 753 211 0 8 chr4 105722075 105722209 -49907911 - B1_Mur1 SINE Alu -6 143 11 3 1391 239 236 0 0 chr4 105722328 105722383 -49907737 - MER5A1 DNA MER1_type -62 104 50 3 1391 204 314 118 69 chr4 105722858 105723002 -49907118 + MIRb SINE MIR 106 256 -12 3 1391 209 209 0 0 chr4 105722964 105723007 -49907113 + L2c LINE L2 3334 3376 -11 3 1391 674 306 235 49 chr4 105723474 105723921 -49906199 - MLT1F LTR MaLR -8 540 11 3 1391 574 295 69 34 chr4 105723933 105724245 -49905875 + MLT1B LTR MaLR 16 358 -7 3 1391 631 244 58 125 chr4 105724731 105724858 -49905262 + RMER10A LTR ERVL 1 118 -324 3 1391 180 0 0 0 chr4 105724858 105724878 -49905242 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1391 631 244 58 125 chr4 105724878 105724972 -49905148 + RMER10A LTR ERVL 119 219 -223 3 1391 405 0 0 0 chr4 105724972 105725017 -49905103 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1391 631 244 58 125 chr4 105725017 105725154 -49904966 + RMER10A LTR ERVL 220 335 -107 3 1391 184 241 190 0 chr4 105725217 105725275 -49904845 - L2 LINE L2 -561 2858 2790 3 1391 272 360 68 0 chr4 105725312 105725459 -49904661 + MER5A DNA MER1_type 2 158 -31 3 1391 232 337 85 5 chr4 105726948 105727148 -49902972 + L2b LINE L2 1425 1640 -1779 3 1391 323 302 132 0 chr4 105727222 105727411 -49902709 + L2b LINE L2 2396 2609 -810 3 1391 774 219 124 31 chr4 105727474 105727623 -49902497 + B3 SINE B2 6 152 -64 3 1391 540 0 0 0 chr4 105727623 105727683 -49902437 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1391 774 219 124 31 chr4 105727683 105727726 -49902394 + B3 SINE B2 153 216 0 3 1391 577 331 306 20 chr4 105728072 105728411 -49901709 - MLT1F1 LTR MaLR -4 565 130 3 1391 220 296 19 0 chr4 105728593 105728647 -49901473 - MIR3 SINE MIR -39 169 115 3 1391 921 277 179 0 chr4 105729016 105729334 -49900786 + MTEb LTR MaLR 2 376 -3 3 1391 272 266 32 92 chr4 105729353 105729462 -49900658 + MTEb LTR MaLR 268 373 -6 3 1391 185 364 59 20 chr4 105730111 105730212 -49899908 + L2b LINE L2 3270 3374 -1 3 1391 1525 164 73 28 chr4 105730802 105731160 -49898960 + L1_Mur2 LINE L1 882 1255 -5831 3 1391 12554 125 38 103 chr4 105731141 105733769 -49896351 + L1_Mur2 LINE L1 2342 4797 -1080 3 1391 260 324 137 12 chr4 105734095 105734290 -49895830 + MIRb SINE MIR 30 254 -14 3 1391 252 244 203 6 chr4 105734751 105734879 -49895241 + MIRc SINE MIR 2 151 -125 3 1391 205 229 0 0 chr4 105737040 105737075 -49893045 - MIR SINE MIR -7 255 221 3 1391 257 280 99 64 chr4 105738271 105738412 -49891708 - MLT1M LTR MaLR -116 556 411 3 1391 240 35 0 0 chr4 105738632 105738661 -49891459 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1391 1287 74 0 0 chr4 105738661 105738876 -49891244 + (TG)n Simple_repeat Simple_repeat 1 215 0 3 1391 640 287 12 31 chr4 105739049 105739211 -49890909 + RSINE1 SINE B4 3 161 -4 3 1391 276 130 0 0 chr4 105739213 105739259 -49890861 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1391 240 35 0 0 chr4 105739260 105739289 -49890831 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1391 513 286 117 25 chr4 105740367 105740563 -49889557 + B3A SINE B2 6 210 -6 3 1391 368 333 87 12 chr4 105740867 105741040 -49889080 - MER20 DNA MER1_type -5 214 29 3 1391 304 402 35 48 chr4 105742309 105742704 -49887416 + MLT1B LTR MaLR 1 390 0 3 1391 312 239 0 0 chr4 105743165 105743232 -49886888 + ID4_ SINE ID 17 83 0 3 1391 289 250 115 49 chr4 105743172 105743294 -49886826 + ID_B1 SINE B4 25 154 -70 3 1391 530 297 91 123 chr4 105743414 105743773 -49886347 + ERVL-E-int LTR ERVL 2506 2844 -2823 3 1391 381 208 0 53 chr4 105743773 105743849 -49886271 + ID4_ SINE ID 5 76 -7 3 1391 530 297 91 123 chr4 105743849 105744019 -49886101 + ERVL-E-int LTR ERVL 2845 3018 -2649 3 1391 253 330 115 10 chr4 105744027 105744131 -49885989 + ORR1E LTR MaLR 18 132 -227 3 1391 1643 108 0 0 chr4 105744340 105744563 -49885557 - URR1B DNA MER1_type 0 225 3 3 1391 424 308 52 26 chr4 105744758 105744991 -49885129 + ERVL-E-int LTR ERVL 3156 3394 -2273 3 1391 414 0 0 0 chr4 105745932 105745978 -49884142 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1391 195 309 51 10 chr4 105746508 105746606 -49883514 - MIR SINE MIR -37 225 124 3 1391 245 216 20 0 chr4 105746714 105746765 -49883355 - MIRc SINE MIR -127 141 90 3 1391 327 328 53 67 chr4 105747612 105747961 -49882159 + MTEa LTR MaLR 26 379 0 3 1391 596 290 24 85 chr4 105748054 105748265 -49881855 + MER20 DNA MER1_type 1 198 -21 3 1391 254 331 18 0 chr4 105748267 105748376 -49881744 + MER45R DNA Tip100 4 115 -1466 3 1391 29 0 0 0 chr4 105749635 105749664 -49880456 + AT_rich Low_complexity Low_complexity 1 29 0 3 1391 248 326 48 48 chr4 105749874 105750019 -49880101 + LTR88c LTR Genie? 6 150 -712 3 1391 428 308 161 74 chr4 105750125 105750585 -49879535 - MLT1H1 LTR MaLR -12 543 44 3 1391 576 0 0 0 chr4 105751762 105751826 -49878294 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1391 422 36 18 0 chr4 105752796 105752852 -49877268 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1391 596 273 10 57 chr4 105752875 105753069 -49877051 + MLT1B LTR MaLR 205 389 -1 3 1391 191 247 56 90 chr4 105754105 105754194 -49875926 + L2c LINE L2 3257 3342 -45 3 1391 186 206 0 0 chr4 105754266 105754300 -49875820 + MIRb SINE MIR 53 86 -182 3 1391 258 250 12 100 chr4 105755128 105755208 -49874912 + ID4_ SINE ID 2 74 -9 3 1391 26 23 0 23 chr4 105755267 105755291 -49874829 + AT_rich Low_complexity Low_complexity 1 24 0 3 1391 717 266 21 21 chr4 105755291 105755479 -49874641 - B3A SINE B2 -10 188 1 4 1391 26 23 0 23 chr4 105755479 105755498 -49874622 + AT_rich Low_complexity Low_complexity 1 19 0 4 1391 755 291 23 106 chr4 105755644 105755909 -49874211 + B4A SINE B4 25 267 -25 4 1391 1077 24 0 51 chr4 105755913 105756091 -49874029 + (GAGAA)n Simple_repeat Simple_repeat 5 173 0 4 1391 525 32 0 0 chr4 105756110 105756173 -49873947 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1391 575 27 0 14 chr4 105757275 105757349 -49872771 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1391 493 309 40 7 chr4 105757361 105757415 -49872705 - B4 SINE B4 -16 276 217 4 1391 423 0 0 0 chr4 105757415 105757462 -49872658 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1391 493 309 40 7 chr4 105757462 105757557 -49872563 - B4 SINE B4 -76 216 123 4 1391 576 0 0 0 chr4 105757648 105757712 -49872408 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1391 817 232 25 69 chr4 105757823 105758027 -49872093 + RLTR19-int LTR ERVK 4126 4320 -1817 4 1391 329 333 19 112 chr4 105758265 105758471 -49871649 - MER34A LTR ERV1 -384 187 1 4 1391 221 123 0 58 chr4 105758595 105758664 -49871456 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1391 1988 180 37 21 chr4 105758707 105759081 -49871039 + MTC LTR MaLR 1 380 -41 4 1391 1239 146 50 16 chr4 105759256 105759507 -49870613 + RLTR24 LTR ERV1 10 333 -196 4 1391 2654 140 61 0 chr4 105759504 105759912 -49870208 - RLTR21 LTR ERVK -1139 433 1 4 1391 640 218 43 2 chr4 105760213 105760383 -49869737 - B3 SINE B2 0 198 13 4 1391 702 251 110 0 chr4 105760457 105760648 -49869472 + B3 SINE B2 2 213 -3 4 1391 291 54 0 0 chr4 105760853 105760890 -49869230 + (GGA)n Simple_repeat Simple_repeat 3 39 0 4 1391 305 275 176 0 chr4 105760892 105761023 -49869097 + HAL1-3A_ME LINE L1 2288 2441 -417 4 1391 423 238 0 47 chr4 105761378 105761506 -49868614 - HAL1-2a_MD LINE L1 -581 2443 2322 4 1391 291 338 127 46 chr4 105761668 105761970 -49868150 + L2c LINE L2 2936 3249 -126 4 1391 570 41 0 0 chr4 105762316 105762389 -49867731 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1391 1021 325 29 14 chr4 105762458 105762736 -49867384 - B4A SINE B4 0 292 11 4 1391 195 42 0 0 chr4 105762736 105762760 -49867360 + (CCA)n Simple_repeat Simple_repeat 3 26 0 4 1391 273 323 24 21 chr4 105762832 105762972 -49867148 - MIR SINE MIR -73 189 57 4 1391 715 274 114 80 chr4 105763491 105763990 -49866130 - RLTR11A2 LTR ERVK -11 516 1 4 1391 1241 48 0 0 chr4 105764156 105764303 -49865817 + B1_Mus1 SINE Alu 2 148 0 4 1391 190 49 22 89 chr4 105764915 105764960 -49865160 + C-rich Low_complexity Low_complexity 6 47 0 4 1391 1027 215 21 5 chr4 105765940 105766132 -49863988 + B3 SINE B2 5 199 -17 4 1391 242 160 0 20 chr4 105766135 105766186 -49863934 + GA-rich Low_complexity Low_complexity 1 50 0 4 1391 238 80 20 20 chr4 105767031 105767082 -49863038 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1391 229 330 93 0 chr4 105768075 105768172 -49861948 + L4 LINE RTE 1676 1781 -248 4 1391 808 289 131 24 chr4 105768620 105768957 -49861163 + Tigger15a DNA TcMar 343 715 0 4 1391 1485 215 118 21 chr4 105769697 105770077 -49860043 - MTD LTR MaLR 0 419 3 4 1391 257 311 120 19 chr4 105771375 105771483 -49858637 - RLTR18B LTR ERVK -3 509 391 4 1391 1946 194 28 11 chr4 105772149 105772513 -49857607 - RLTR18B LTR ERVK -74 438 69 4 1391 740 121 115 2 chr4 105772515 105772673 -49857447 + B2_Mm2 SINE B2 3 188 -5 4 1391 210 143 0 0 chr4 105772678 105772713 -49857407 + (GGA)n Simple_repeat Simple_repeat 2 36 0 4 1391 393 208 42 0 chr4 105772720 105772792 -49857328 - RLTR18B LTR ERVK -431 81 7 4 1391 187 326 91 10 chr4 105773665 105773764 -49856356 - MIRc SINE MIR -102 166 60 4 1392 258 276 11 54 chr4 105776109 105776201 -49853919 - MIR3 SINE MIR -48 160 73 4 1392 412 319 17 40 chr4 105776385 105776558 -49853562 + Charlie16a DNA MER1_type 137 305 -37 4 1392 269 250 87 0 chr4 105777211 105777315 -49852805 + L2 LINE L2 2814 2926 -493 4 1392 400 242 76 53 chr4 105777493 105777624 -49852496 - MER5A DNA MER1_type -40 149 16 4 1392 243 0 0 0 chr4 105777738 105777765 -49852355 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1392 216 0 0 0 chr4 105777765 105777788 -49852332 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1392 637 143 63 8 chr4 105778036 105778163 -49851957 + URR1B DNA MER1_type 92 225 0 4 1392 315 0 0 0 chr4 105778483 105778518 -49851602 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1392 219 200 20 20 chr4 105778718 105778769 -49851351 + GA-rich Low_complexity Low_complexity 3 53 0 4 1392 618 161 40 0 chr4 105778925 105779049 -49851071 + MTD LTR MaLR 1 129 -290 4 1392 26 0 0 0 chr4 105779208 105779234 -49850886 + AT_rich Low_complexity Low_complexity 1 26 0 4 1392 199 54 0 51 chr4 105779404 105779443 -49850677 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 4 1392 466 91 26 0 chr4 105779579 105779656 -49850464 + (CATA)n Simple_repeat Simple_repeat 4 82 0 4 1392 495 298 104 16 chr4 105779826 105780191 -49849929 + Zaphod DNA Tip100 429 825 -3206 4 1392 332 222 70 10 chr4 105780672 105780772 -49849348 - L1M5 LINE L1 -1312 4834 4729 4 1392 391 241 62 9 chr4 105780775 105780888 -49849232 + PB1D7 SINE Alu 1 119 -1 4 1392 216 179 0 0 chr4 105780926 105780965 -49849155 + A-rich Low_complexity Low_complexity 4 42 0 4 1392 242 310 38 23 chr4 105781013 105781145 -49848975 - L1M5 LINE L1 -1464 4682 4549 4 1392 802 259 6 0 chr4 105781199 105781361 -49848759 - RSINE1 SINE B4 0 165 3 4 1392 405 268 173 49 chr4 105781365 105781694 -49848426 - L1M5 LINE L1 -1589 4557 4188 4 1392 943 239 192 13 chr4 105781939 105782357 -49847763 - L1M5 LINE L1 -2170 3976 3460 4 1392 1034 298 81 13 chr4 105782350 105782880 -49847240 - L1MC4a LINE L1 -1 7881 7316 4 1392 453 312 6 25 chr4 105783047 105783208 -49846912 - RSINE1 SINE B4 -6 159 2 4 1392 219 69 0 0 chr4 105783906 105783935 -49846185 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 1392 526 192 6 49 chr4 105783944 105784108 -49846012 + Lx9 LINE L1 7477 7633 -11 4 1392 24 0 0 0 chr4 105784112 105784136 -49845984 + AT_rich Low_complexity Low_complexity 1 24 0 4 1392 297 273 47 35 chr4 105784136 105784307 -49845813 + Zaphod DNA Tip100 3478 3650 -381 4 1392 241 337 12 24 chr4 105784565 105784650 -49845470 - PB1D10 SINE Alu -31 86 3 4 1392 1157 96 89 6 chr4 105784959 105785138 -49844982 + B2_Mm2 SINE B2 2 195 0 4 1392 510 170 0 0 chr4 105785138 105785232 -49844888 + GA-rich Low_complexity Low_complexity 1 94 0 4 1392 182 62 31 0 chr4 105786383 105786415 -49843705 + (TGGGGG)n Simple_repeat Simple_repeat 5 37 0 4 1392 194 321 123 0 chr4 105786968 105787074 -49843046 - L2a LINE L2 -21 3405 3287 4 1392 390 42 0 0 chr4 105787274 105787322 -49842798 + (GGA)n Simple_repeat Simple_repeat 2 49 0 4 1392 392 287 89 78 chr4 105787473 105787845 -49842275 - MLT1C LTR MaLR 0 390 21 4 1392 234 0 0 0 chr4 105788020 105788046 -49842074 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1392 288 0 0 0 chr4 105790068 105790100 -49840020 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1392 194 274 0 0 chr4 105790513 105790564 -49839556 + MIRb SINE MIR 204 254 -14 4 1392 23 33 0 0 chr4 105790685 105790715 -49839405 + AT_rich Low_complexity Low_complexity 1 30 0 4 1392 529 205 8 17 chr4 105791330 105791449 -49838671 - RLTR16 LTR ERVK 0 505 388 4 1392 755 73 18 0 chr4 105791458 105791568 -49838552 + (TTTTC)n Simple_repeat Simple_repeat 4 115 0 4 1392 1225 203 144 23 chr4 105791691 105792044 -49838076 - RLTR16 LTR ERVK -104 401 6 4 1392 975 219 116 23 chr4 105792255 105792563 -49837557 - Lx7 LINE L1 -16 7680 7117 4 1392 1157 246 101 20 chr4 105792714 105793002 -49837118 - Lx7 LINE L1 -323 7373 7058 4 1392 522 0 0 0 chr4 105793002 105793060 -49837060 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1392 1157 246 101 20 chr4 105793060 105793128 -49836992 - Lx7 LINE L1 -639 7057 6988 4 1392 4335 119 19 5 chr4 105793112 105793814 -49836306 - L1_Mur3 LINE L1 -3952 1928 1209 4 1392 234 0 0 0 chr4 105793814 105793840 -49836280 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 1392 2680 110 45 0 chr4 105793840 105794134 -49835986 - L1_Mur3 LINE L1 -6520 1208 909 4 1392 921 185 87 0 chr4 105794157 105794341 -49835779 - L1_Mur3 LINE L1 -7009 719 520 4 1392 326 320 0 28 chr4 105794682 105794788 -49835332 + PB1D10 SINE Alu 2 104 -13 4 1392 282 341 61 62 chr4 105796290 105796606 -49833514 - L2a LINE L2 -18 3408 3051 4 1392 649 144 8 8 chr4 105796709 105796842 -49833278 + CT-rich Low_complexity Low_complexity 2 134 0 4 1392 264 226 32 0 chr4 105799210 105799272 -49830848 - B1F2 SINE Alu -55 94 31 4 1392 273 271 101 8 chr4 105799879 105799998 -49830122 - MIRb SINE MIR -18 250 121 4 1392 185 223 15 0 chr4 105799997 105800054 -49830066 + MIRc SINE MIR 37 99 -169 4 1392 415 310 94 57 chr4 105800386 105800740 -49829380 + ORR1D2 LTR MaLR 1 366 -4 4 1392 292 240 40 0 chr4 105801301 105801376 -49828744 - MIRb SINE MIR -133 135 58 4 1392 194 329 69 23 chr4 105802531 105802618 -49827502 - MIR SINE MIR -60 148 58 4 1392 305 319 56 6 chr4 105802651 105802812 -49827308 - LTR16D1 LTR ERVL -4 671 503 4 1392 486 0 0 0 chr4 105802828 105802882 -49827238 + (CAG)n Simple_repeat Simple_repeat 1 54 0 4 1392 225 262 191 0 chr4 105803056 105803140 -49826980 + MER81 DNA AcHobo 15 114 0 4 1392 315 0 0 0 chr4 105803141 105803176 -49826944 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1392 244 250 175 21 chr4 105803812 105803955 -49826165 + MLT1A1 LTR MaLR 244 408 0 4 1392 586 252 37 0 chr4 105804130 105804265 -49825855 - B1F SINE Alu -7 142 3 4 1392 295 257 35 35 chr4 105804313 105804426 -49825694 + B4 SINE B4 29 141 -151 4 1392 2116 149 56 13 chr4 105804472 105804867 -49825253 + MTC LTR MaLR 2 413 -8 4 1392 1185 44 0 0 chr4 105804882 105805019 -49825101 + B1_Mus1 SINE Alu 3 139 -9 4 1392 234 322 0 65 chr4 105805021 105805114 -49825006 + B4 SINE B4 206 292 0 4 1392 314 239 0 0 chr4 105805166 105805237 -49824883 + MLT1B LTR MaLR 24 94 -296 4 1392 1494 35 0 0 chr4 105805285 105805567 -49824553 + (TTGG)n Simple_repeat Simple_repeat 1 282 0 4 1392 304 308 68 119 chr4 105805686 105805863 -49824257 + MLT1B LTR MaLR 217 384 -6 4 1392 722 281 41 41 chr4 105807318 105807589 -49822531 - B4A SINE B4 -21 271 1 4 1392 294 319 89 0 chr4 105807957 105808092 -49822028 + MER31A LTR ERV1 121 267 -218 4 1392 681 139 147 40 chr4 105810450 105810600 -49819520 - L1_Mur3 LINE L1 -1453 4427 4262 4 1392 2130 250 50 25 chr4 105810592 105811102 -49819018 + Lx7 LINE L1 6795 7324 -372 5 1392 261 0 0 0 chr4 105811102 105811131 -49818989 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1392 2130 245 79 64 chr4 105811131 105811336 -49818784 + Lx7 LINE L1 7325 7683 -13 5 1392 336 359 0 0 chr4 105811412 105811518 -49818602 - MER57E1 LTR ERV1 -266 106 1 5 1392 339 266 55 9 chr4 105811596 105811706 -49818414 + PB1D7 SINE Alu 1 115 -5 5 1392 693 45 0 0 chr4 105811742 105811831 -49818289 + (GGGA)n Simple_repeat Simple_repeat 2 90 0 5 1392 419 17 0 49 chr4 105812406 105812467 -49817653 + (A)n Simple_repeat Simple_repeat 1 58 0 5 1392 280 250 76 43 chr4 105813544 105813636 -49816484 - MLT1A1 LTR MaLR -8 400 306 5 1392 1286 248 25 56 chr4 105814472 105814831 -49815289 + ORR1E LTR MaLR 11 358 -1 5 1392 266 353 96 21 chr4 105815149 105815389 -49814731 + MLT1A0 LTR MaLR 108 365 0 5 1392 514 256 133 5 chr4 105815477 105815673 -49814447 + MER58A DNA MER1_type 1 221 -3 5 1392 254 325 39 13 chr4 105815773 105815926 -49814194 - ERVL-E-int LTR ERVL -2978 2689 2533 5 1392 4591 77 3 2 chr4 105816373 105816961 -49813159 + L1_Mus2 LINE L1 5978 6566 0 5 1392 22 35 0 0 chr4 105817221 105817250 -49812870 + AT_rich Low_complexity Low_complexity 1 29 0 5 1392 1421 202 130 5 chr4 105817410 105817779 -49812341 + MTD LTR MaLR 3 417 -2 5 1392 1466 130 14 0 chr4 105817932 105818155 -49811965 - URR1A DNA MER1_type 0 226 1 5 1392 1718 186 62 35 chr4 105818390 105818547 -49811573 + ORR1C1 LTR MaLR 1 163 -215 5 1392 546 16 0 0 chr4 105818547 105818610 -49811510 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1392 1718 186 62 35 chr4 105818610 105818820 -49811300 + ORR1C1 LTR MaLR 164 377 -1 5 1392 318 326 50 28 chr4 105820373 105820553 -49809567 - MIR SINE MIR -51 211 28 5 1392 674 212 37 18 chr4 105820621 105820784 -49809336 + L1MC2 LINE L1 5725 5890 -454 5 1392 193 203 217 0 chr4 105822595 105822664 -49807456 - L2c LINE L2 -2 3385 3302 5 1392 648 48 0 0 chr4 105822683 105822767 -49807353 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 5 1392 419 230 159 22 chr4 105822864 105823002 -49807118 + ID_B1 SINE B4 4 160 -64 5 1392 23 54 0 0 chr4 105823734 105823771 -49806349 + AT_rich Low_complexity Low_complexity 1 37 0 5 1392 252 301 0 0 chr4 105824136 105824209 -49805911 + ID4_ SINE ID 1 73 -10 5 1392 370 200 13 0 chr4 105824678 105824753 -49805367 - ID4 SINE ID -5 78 3 5 1392 1172 158 30 0 chr4 105824967 105825170 -49804950 - B3 SINE B2 0 216 8 5 1392 295 355 43 21 chr4 105826191 105826202 -49803918 - B1_Mur4 SINE Alu 0 150 78 5 1392 401 331 8 8 chr4 105826202 105826324 -49803796 - ID_B1 SINE B4 -9 215 94 5 1392 513 319 0 0 chr4 105826357 105826492 -49803628 - B1F SINE Alu -13 136 2 5 1392 540 264 97 31 chr4 105826511 105826706 -49803414 + MER3 DNA MER1_type 2 209 0 5 1392 189 0 0 0 chr4 105827130 105827151 -49802969 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1392 820 217 55 10 chr4 105827151 105827351 -49802769 + B4A SINE B4 17 225 -67 5 1392 334 302 152 49 chr4 105827367 105827495 -49802625 + L1MEf LINE L1 841 961 -5239 5 1392 264 59 0 0 chr4 105827495 105827529 -49802591 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1392 548 217 213 46 chr4 105827529 105827703 -49802417 - B3 SINE B2 -12 204 2 5 1392 334 302 152 49 chr4 105827703 105828026 -49802094 + L1MEf LINE L1 962 1339 -4861 5 1392 284 364 10 0 chr4 105828077 105828176 -49801944 - Tigger5 DNA MER2_type -2234 172 73 5 1392 253 282 0 13 chr4 105828196 105828275 -49801845 - PB1D10 SINE Alu -5 112 35 5 1392 440 334 60 35 chr4 105828373 105828720 -49801400 + L1MEf LINE L1 1355 1710 -4490 5 1392 207 361 35 0 chr4 105829207 105829351 -49800769 - MIRb SINE MIR -82 186 36 5 1392 308 219 13 27 chr4 105829371 105829446 -49800674 - L2a LINE L2 -2 3424 3351 5 1392 183 327 59 65 chr4 105829775 105829945 -49800175 - L2 LINE L2 -355 3064 2896 5 1392 2536 182 21 2 chr4 105830607 105831085 -49799035 + RLTR18B LTR ERVK 26 512 0 5 1392 302 98 0 0 chr4 105831483 105831534 -49798586 - B3 SINE B2 -5 211 161 5 1392 830 320 33 27 chr4 105831534 105831865 -49798255 + RLTR18 LTR ERVK 1 333 -283 5 1392 762 298 66 53 chr4 105831895 105832214 -49797906 + RLTR18B LTR ERVK 190 512 0 5 1392 541 247 55 67 chr4 105832215 105832380 -49797740 - B3 SINE B2 -51 165 3 5 1392 637 232 14 14 chr4 105832448 105832592 -49797528 - RSINE1 SINE B4 -19 146 3 5 1392 1702 189 130 8 chr4 105833971 105834324 -49795796 - MTD LTR MaLR -14 405 10 5 1392 1132 277 56 25 chr4 105836131 105836490 -49793630 - MLT1A LTR MaLR -4 370 1 5 1392 1398 237 89 19 chr4 105836765 105837126 -49792994 - MTD LTR MaLR 0 419 34 5 1392 316 287 30 54 chr4 105837886 105838052 -49792068 - MamRep4096 DNA hAT? -104 322 161 5 1392 313 299 32 49 chr4 105838195 105838318 -49791802 - MamRep4096 DNA hAT? -258 168 48 5 1392 333 268 49 0 chr4 105838474 105838556 -49791564 + MTEa LTR MaLR 1 86 -293 5 1392 3361 279 142 23 chr4 105838565 105838836 -49791284 + MTE-int LTR MaLR 219 507 -1073 5 1392 2307 123 47 8 chr4 105838836 105839196 -49790924 - ORR1D1 LTR MaLR 0 374 1 5 1392 3361 279 142 23 chr4 105839196 105839915 -49790205 + MTE-int LTR MaLR 508 1327 -253 5 1392 750 216 88 0 chr4 105839914 105840062 -49790058 + MTEb LTR MaLR 18 178 -201 5 1392 734 270 87 19 chr4 105840072 105840336 -49789784 + B4A SINE B4 1 282 -10 5 1392 382 274 18 1 chr4 105840371 105840480 -49789640 + MTEb LTR MaLR 245 375 -4 5 1392 183 262 82 0 chr4 105841302 105841363 -49788757 - L3b LINE CR1 -258 224 159 5 1392 1034 188 64 0 chr4 105842559 105842761 -49787359 + B3 SINE B2 2 216 0 5 1392 225 34 16 78 chr4 105842850 105842914 -49787206 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 5 1392 727 255 93 154 chr4 105843039 105843225 -49786895 + RLTR16 LTR ERVK 1 156 -349 5 1392 1271 34 0 0 chr4 105843225 105843372 -49786748 + B1_Mm SINE Alu 1 147 0 5 1392 727 255 93 154 chr4 105843372 105843723 -49786397 + RLTR16 LTR ERVK 157 505 0 5 1392 378 318 71 47 chr4 105843890 105844101 -49786019 - L1ME4a LINE L1 -219 5905 5690 5 1392 445 331 29 39 chr4 105844231 105844521 -49785599 - MLT1A LTR MaLR 0 505 88 5 1392 427 360 44 58 chr4 105844533 105844894 -49785226 - L1ME4a LINE L1 -545 5628 5268 5 1392 333 275 0 6 chr4 105844936 105845019 -49785101 - ID4 SINE ID -52 100 20 5 1392 882 229 5 38 chr4 105845113 105845299 -49784821 - B3A SINE B2 -18 180 1 5 1392 225 267 40 189 chr4 105845398 105845546 -49784574 + LTR37A LTR ERV1 55 180 -246 5 1392 566 261 12 64 chr4 105845966 105846138 -49783982 + RSINE1 SINE B4 1 163 -2 5 1392 422 312 12 78 chr4 105846234 105846401 -49783719 + RSINE1 SINE B4 4 159 -6 5 1392 1156 242 108 3 chr4 105846437 105846716 -49783404 + Lx6 LINE L1 7179 7460 0 5 1392 833 264 104 49 chr4 105847054 105847456 -49782664 - MLT1C LTR MaLR -2 388 3 5 1392 1148 276 21 11 chr4 105847680 105847962 -49782158 + B4 SINE B4 8 292 0 5 1392 420 344 96 26 chr4 105848130 105848360 -49781760 - MIRb SINE MIR -7 261 16 5 1392 408 258 20 96 chr4 105849347 105849361 -49780759 - MTEb LTR MaLR -9 370 359 5 1392 258 105 0 0 chr4 105849361 105849399 -49780721 + (ATG)n Simple_repeat Simple_repeat 2 39 0 5 1392 408 258 20 96 chr4 105849399 105849530 -49780590 - MTEb LTR MaLR -21 358 236 5 1392 38737 15 4 7 chr4 105849580 105855187 -49774933 + L1Md_A LINE L1 1 5586 -297 5 1392 8986 14 0 0 chr4 105855187 105856183 -49773937 + L1Md_A LINE L1 5587 6582 0 5 1392 304 289 165 65 chr4 105856190 105856360 -49773760 - MTEb LTR MaLR -183 187 1 5 1392 240 261 0 0 chr4 105856733 105856779 -49773341 - MIR SINE MIR -163 99 54 5 1392 2591 58 64 6 chr4 105856783 105857110 -49773010 - ORR1A1 LTR MaLR 0 346 1 5 1392 264 122 0 0 chr4 105857334 105857375 -49772745 + (TATG)n Simple_repeat Simple_repeat 4 44 0 5 1392 2599 138 8 0 chr4 105857515 105857906 -49772214 - ORR1B1 LTR MaLR 0 394 1 5 1392 270 337 56 0 chr4 105858079 105858211 -49771909 - MIRc SINE MIR -114 154 16 5 1392 211 275 91 91 chr4 105859011 105859099 -49771021 - MIRm SINE MIR -96 180 93 5 1392 295 273 39 0 chr4 105859515 105859592 -49770528 + MADE2 DNA Mariner 1 80 0 5 1392 391 311 30 47 chr4 105859941 105860110 -49770010 + MLT1J2 LTR MaLR 245 410 -38 5 1392 303 28 0 0 chr4 105860381 105860417 -49769703 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 5 1392 475 126 21 75 chr4 105861308 105861402 -49768718 + RMER19B LTR ERVK 807 895 -7 5 1392 376 243 28 37 chr4 105862924 105863031 -49767089 + MIR SINE MIR 132 237 -25 5 1392 215 191 64 0 chr4 105863097 105863144 -49766976 + MIRc SINE MIR 13 62 -206 5 1392 230 322 39 47 chr4 105863469 105863596 -49766524 + MIR SINE MIR 16 141 -67 5 1392 491 191 55 45 chr4 105864008 105864088 -49766032 + B1_Mur2 SINE Alu 3 83 -66 5 1392 5477 181 38 50 chr4 105864088 105865211 -49764909 + RLTR21 LTR ERVK 1 1110 -462 5 1392 226 218 91 0 chr4 105865284 105865339 -49764781 + RMER12B LTR ERVK 1345 1404 0 5 1392 231 344 0 0 chr4 105865339 105865390 -49764730 + B1_Mur2 SINE Alu 77 127 -22 5 1392 368 360 44 75 chr4 105865751 105866204 -49763916 + MLT1H2 LTR MaLR 49 487 -2 5 1392 207 290 14 42 chr4 105866678 105866750 -49763370 - L2b LINE L2 -1 3425 3356 5 1392 698 300 78 68 chr4 105866768 105867090 -49763030 + ORR1E LTR MaLR 1 325 -34 5 1392 652 277 91 25 chr4 105867102 105867376 -49762744 + Lx8 LINE L1 5615 5906 -1567 5 1392 260 287 96 29 chr4 105867693 105867797 -49762323 - L2b LINE L2 -221 3154 3044 5 1392 2269 211 193 7 chr4 105868878 105869483 -49760637 - Lx7 LINE L1 -23 7673 6956 5 1392 3068 158 6 19 chr4 105869586 105870107 -49760013 + RMER20A LTR ERVK 3 516 0 5 1392 229 293 42 42 chr4 105870279 105870375 -49759745 + LTR41 LTR ERVL 40 135 -633 5 1392 330 288 200 0 chr4 105870524 105870694 -49759426 - MIRb SINE MIR -34 234 31 5 1392 470 319 107 0 chr4 105870736 105870905 -49759215 + MIRb SINE MIR 68 254 -14 5 1392 200 300 196 23 chr4 105871229 105871362 -49758758 - MIRc SINE MIR 0 268 113 6 1392 885 268 29 21 chr4 105871497 105871737 -49758383 + B4A SINE B4 2 243 -49 6 1392 1632 232 14 38 chr4 105871742 105872110 -49758010 + MTD LTR MaLR 61 419 0 6 1392 195 42 0 0 chr4 105873297 105873321 -49756799 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1392 699 169 6 18 chr4 105873326 105873495 -49756625 + (CATATA)n Simple_repeat Simple_repeat 5 171 0 6 1392 434 157 43 19 chr4 105873959 105874121 -49755999 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 1392 540 65 0 0 chr4 105875685 105875762 -49754358 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1392 290 216 0 13 chr4 105875762 105875837 -49754283 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 6 1392 321 292 42 0 chr4 105875862 105875934 -49754186 - RSINE1 SINE B4 -52 113 39 6 1392 358 292 77 42 chr4 105876818 105876961 -49753159 - LTR81B LTR ERV1? -1243 150 3 6 1392 322 316 0 0 chr4 105877511 105877590 -49752530 + PB1D10 SINE Alu 3 81 -36 6 1392 405 0 0 0 chr4 105877810 105877855 -49752265 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1392 22 0 0 0 chr4 105878077 105878099 -49752021 + AT_rich Low_complexity Low_complexity 1 22 0 6 1392 183 80 0 0 chr4 105878202 105878227 -49751893 + (CAAAT)n Simple_repeat Simple_repeat 4 28 0 6 1392 3447 227 62 23 chr4 105878360 105880145 -49749975 + RMER1A Other Other 1 960 -106 6 1392 279 0 0 0 chr4 105880145 105880176 -49749944 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1392 3262 213 67 6 chr4 105880176 105880281 -49749839 + RMER1B Other Other 961 1065 -1 6 1392 610 168 13 144 chr4 105880357 105880510 -49749610 - B1_Mur2 SINE Alu -1 148 16 6 1392 280 256 83 83 chr4 105880441 105880573 -49749547 - MT2B LTR ERVL -360 241 110 6 1392 1199 68 0 0 chr4 105880615 105880762 -49749358 + B1_Mus2 SINE Alu 1 147 0 6 1392 201 94 0 0 chr4 105880763 105880795 -49749325 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1392 948 148 179 11 chr4 105880854 105881038 -49749082 + B3 SINE B2 1 215 -1 6 1392 825 167 0 14 chr4 105881052 105881192 -49748928 + B1_Mur4 SINE Alu 1 138 -12 6 1392 401 269 64 38 chr4 105881817 105881979 -49748141 - MIR SINE MIR -63 205 38 6 1392 207 0 0 0 chr4 105882226 105882249 -49747871 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1392 5765 174 27 22 chr4 105882281 105883333 -49746787 + RMER1B Other Other 18 1339 -3 6 1392 253 98 0 146 chr4 105883350 105883398 -49746722 + B2_Mm2 SINE B2 1 41 -154 6 1392 765 170 0 0 chr4 105883638 105883779 -49746341 + GA-rich Low_complexity Low_complexity 3 143 0 6 1392 450 0 0 0 chr4 105883781 105883831 -49746289 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 6 1392 459 212 59 0 chr4 105884637 105884722 -49745398 + PB1D10 SINE Alu 3 92 -25 6 1392 203 266 20 2 chr4 105885308 105885364 -49744756 - MIR SINE MIR -2 266 207 6 1392 213 267 33 55 chr4 105886917 105887008 -49743112 - MIR3 SINE MIR -52 156 68 6 1392 247 333 0 12 chr4 105887058 105887140 -49742980 - MIR SINE MIR -8 254 174 6 1392 300 236 83 0 chr4 105887709 105887781 -49742339 + B3 SINE B2 135 212 -4 6 1392 434 318 9 18 chr4 105888104 105888216 -49741904 - PB1D10 SINE Alu -5 112 2 6 1392 21 0 0 0 chr4 105888665 105888686 -49741434 + AT_rich Low_complexity Low_complexity 1 21 0 6 1392 541 297 6 13 chr4 105888806 105888963 -49741157 + RSINE1 SINE B4 4 159 -6 6 1392 472 170 10 41 chr4 105890015 105890113 -49740007 + B1_Mur4 SINE Alu 55 149 -1 6 1392 252 232 18 0 chr4 105890118 105890159 -49739961 + polypurine Low_complexity Low_complexity 2 43 0 6 1392 729 63 0 0 chr4 105890159 105890254 -49739866 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 6 1392 252 232 18 0 chr4 105890254 105890268 -49739852 + polypurine Low_complexity Low_complexity 44 57 0 6 1392 352 269 184 9 chr4 105890430 105890539 -49739581 + B1F SINE Alu 1 128 -21 6 1392 305 234 82 82 chr4 105891293 105891428 -49738692 - MLT1H LTR MaLR -336 213 79 6 1392 723 297 46 33 chr4 105891465 105891768 -49738352 + MLT2C2 LTR ERVL 16 322 -142 6 1392 227 157 0 19 chr4 105891788 105891840 -49738280 + CT-rich Low_complexity Low_complexity 2 52 0 6 1392 522 0 0 0 chr4 105891848 105891906 -49738214 + (TTCCC)n Simple_repeat Simple_repeat 5 62 0 6 1392 492 273 275 76 chr4 105891941 105892258 -49737862 - MLT1A1 LTR MaLR -3 405 26 6 1392 375 23 0 0 chr4 105892275 105892319 -49737801 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1392 269 238 134 70 chr4 105893975 105894147 -49735973 + MIRb SINE MIR 49 231 -37 6 1392 180 304 129 9 chr4 105894438 105894554 -49735566 + MIRc SINE MIR 102 231 -37 6 1392 572 227 49 25 chr4 105895354 105895497 -49734623 + RSINE1 SINE B4 1 147 -18 6 1392 357 24 0 0 chr4 105895497 105895539 -49734581 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1392 459 0 0 0 chr4 105895539 105895589 -49734531 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1392 2176 79 13 0 chr4 105896801 105897116 -49733004 - ORR1A2 LTR MaLR -8 319 1 6 1392 345 328 65 99 chr4 105897200 105897583 -49732537 - MLT1D LTR MaLR 0 505 136 6 1392 380 293 162 37 chr4 105897713 105897954 -49732166 + B4A SINE B4 4 274 -18 6 1392 293 140 0 17 chr4 105897977 105898035 -49732085 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1392 189 312 123 15 chr4 105898572 105898702 -49731418 + MIR SINE MIR 70 213 -49 6 1392 516 305 61 64 chr4 105898797 105899077 -49731043 + MT2A LTR ERVL 100 378 -155 6 1392 209 331 12 12 chr4 105899729 105899854 -49730266 - MIRm SINE MIR -96 172 50 6 1392 315 0 0 0 chr4 105900676 105900711 -49729409 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 6 1392 521 15 15 0 chr4 105900958 105901024 -49729096 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1392 273 196 0 0 chr4 105901427 105901483 -49728637 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1392 523 197 156 0 chr4 105901925 105902047 -49728073 + B1_Mus2 SINE Alu 1 141 -6 6 1392 27 49 0 0 chr4 105902047 105902088 -49728032 + AT_rich Low_complexity Low_complexity 1 41 0 6 1392 237 132 0 0 chr4 105902107 105902145 -49727975 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1392 2051 132 93 6 chr4 105902498 105902841 -49727279 + ORR1C1 LTR MaLR 6 378 0 6 1392 1160 174 35 5 chr4 105902887 105903089 -49727031 + B3 SINE B2 2 209 -7 6 1392 285 325 24 32 chr4 105903112 105903130 -49726990 + ID_B1 SINE B4 79 196 -23 6 1392 286 287 89 0 chr4 105903130 105903231 -49726889 + B1F SINE Alu 9 118 -31 6 1392 351 227 45 18 chr4 105903591 105903630 -49726490 - HAL1-3A_ME LINE L1 -768 2090 2052 6 1392 804 206 0 7 chr4 105903630 105903772 -49726348 - B1_Mur2 SINE Alu -7 142 2 6 1392 351 227 45 18 chr4 105903772 105903844 -49726276 - HAL1-3A_ME LINE L1 -807 2051 1976 6 1392 300 152 0 0 chr4 105903862 105903928 -49726192 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1392 457 224 6 16 chr4 105903961 105904143 -49725977 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1392 238 241 181 0 chr4 105904230 105904346 -49725774 - Lx7 LINE L1 0 7696 7560 6 1392 880 311 43 9 chr4 105904327 105904651 -49725469 - Lx7 LINE L1 -349 7347 7013 6 1392 746 225 52 64 chr4 105904651 105904884 -49725236 - B4A SINE B4 -62 230 1 6 1392 296 83 0 20 chr4 105904907 105904956 -49725164 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1392 256 197 80 53 chr4 105905201 105905276 -49724844 + LFSINE_Vert SINE SINE 378 454 -5 6 21 743 291 90 41 chr4 105906012 105906425 -49723695 - L1MC1 LINE L1 -5 6328 5896 6 1393 657 235 0 56 chr4 105906471 105906615 -49723505 + RSINE1 SINE B4 1 136 -29 6 1393 327 49 0 0 chr4 105906621 105906662 -49723458 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1393 1075 87 0 0 chr4 105906702 105906840 -49723280 + B1_Mus1 SINE Alu 3 140 -8 6 1393 936 111 30 0 chr4 105907021 105907047 -49723073 + B1_Mus2 SINE Alu 1 26 -121 6 1393 1325 75 17 0 chr4 105907047 105907221 -49722899 + B2_Mm2 SINE B2 2 178 -17 6 1393 936 111 30 0 chr4 105907221 105907329 -49722791 + B1_Mus2 SINE Alu 27 137 -10 6 1393 387 0 0 0 chr4 105907329 105907372 -49722748 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 6 1393 448 255 40 85 chr4 105907423 105907599 -49722521 + B4A SINE B4 110 277 -15 6 1393 607 291 123 60 chr4 105907677 105907965 -49722155 + L1MDa LINE L1 419 972 -5661 6 1393 265 226 0 19 chr4 105907993 105908047 -49722073 - MLT1A0 LTR MaLR -148 217 165 6 1393 328 247 34 0 chr4 105908475 105908564 -49721556 + ORR1E LTR MaLR 255 346 -13 6 1393 451 303 139 27 chr4 105908566 105908806 -49721314 + L1MDa LINE L1 1690 1964 -4669 6 1393 783 193 14 0 chr4 105908806 105908951 -49721169 + B1_Mur2 SINE Alu 3 149 0 6 1393 451 303 139 27 chr4 105908951 105909191 -49720929 + L1MDa LINE L1 1965 2223 -4410 6 1393 682 157 9 0 chr4 105909193 105909308 -49720812 + B1_Mur2 SINE Alu 33 148 -1 6 1393 236 157 0 38 chr4 105909373 105909426 -49720694 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 6 1393 4409 24 0 0 chr4 105909426 105909919 -49720201 + MT2_Mm LTR ERVL 1 493 0 6 1393 15827 48 6 0 chr4 105909919 105912707 -49717413 + MERVL_2A-int LTR ERVL 1 2929 -2832 6 1393 5867 37 1 0 chr4 105912710 105913392 -49716728 + MERVL_2A-int LTR ERVL 4678 5360 -125 6 1393 362 167 46 35 chr4 105913392 105913479 -49716641 + ORR1A3-int LTR MaLR 553 640 -1323 6 1393 321 0 0 0 chr4 105913479 105913517 -49716603 + MERVL_2A-int LTR ERVL 5448 5485 0 6 1393 4408 26 0 0 chr4 105913517 105914010 -49716110 + MT2_Mm LTR ERVL 1 493 0 6 1393 831 128 90 0 chr4 105914360 105914493 -49715627 + B1_Mus2 SINE Alu 2 146 -1 6 1393 583 220 73 123 chr4 105914522 105914653 -49715467 - L1MD LINE L1 -650 5592 5462 6 1393 874 202 89 0 chr4 105914653 105914856 -49715264 - ID_B1 SINE B4 -2 222 2 6 1393 583 222 74 97 chr4 105914856 105915148 -49714972 - L1MD LINE L1 -781 5461 5175 6 1393 896 135 21 7 chr4 105915162 105915304 -49714816 - B1_Mus2 SINE Alu -3 144 1 6 1393 264 174 258 0 chr4 105915417 105915490 -49714630 - ID2 SINE ID -62 90 2 6 1393 369 109 0 0 chr4 105915519 105915574 -49714546 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 6 1393 297 128 0 0 chr4 105915577 105915624 -49714496 + (CCTG)n Simple_repeat Simple_repeat 2 48 0 6 1393 942 134 0 7 chr4 105915627 105915770 -49714350 - B1_Mur2 SINE Alu -6 143 2 6 1393 464 243 31 119 chr4 105915770 105915783 -49714337 - B4 SINE B4 -69 220 79 7 1393 368 228 38 11 chr4 105915783 105915932 -49714188 + L1MD LINE L1 5594 5753 -606 7 1393 465 285 16 63 chr4 105916258 105916449 -49713671 - ORR1E LTR MaLR -175 184 3 7 1393 1258 27 0 0 chr4 105916665 105916812 -49713308 - B1_Mm SINE Alu 0 147 1 7 1393 340 375 70 0 chr4 105916815 105917015 -49713105 + LTR16A1 LTR ERVL 240 453 -3 7 1393 255 355 9 18 chr4 105918105 105918217 -49711903 - MER81 DNA AcHobo -3 111 1 7 1393 552 203 52 22 chr4 105918763 105918899 -49711221 + MTD LTR MaLR 71 210 -209 7 1393 2285 54 0 0 chr4 105918899 105919177 -49710943 + L1_Mus1 LINE L1 6290 6567 0 7 1393 280 259 24 65 chr4 105919177 105919202 -49710918 + MTD LTR MaLR 196 222 -185 7 1393 594 41 0 0 chr4 105919214 105919287 -49710833 + (GAAAA)n Simple_repeat Simple_repeat 3 75 0 7 1393 647 214 130 12 chr4 105919287 105919448 -49710672 + MTD LTR MaLR 196 375 -44 7 1393 837 91 13 87 chr4 105919479 105919592 -49710528 - B2_Mm2 SINE B2 -61 155 33 7 1393 1180 91 80 6 chr4 105919592 105919768 -49710352 - B2_Mm2 SINE B2 -5 190 2 7 1393 837 80 0 88 chr4 105919768 105919809 -49710311 - B2_Mm2 SINE B2 -163 32 1 7 1393 277 207 17 0 chr4 105919809 105919863 -49710257 + MTD LTR MaLR 363 417 -2 7 1393 333 333 43 26 chr4 105920273 105920285 -49709835 + ID SINE ID 73 86 -138 7 1393 217 339 33 82 chr4 105920285 105920407 -49709713 + PB1D10 SINE Alu 1 116 -1 7 1393 1009 188 91 10 chr4 105920601 105920800 -49709320 - B3 SINE B2 0 216 2 7 1393 190 359 16 0 chr4 105920855 105920919 -49709201 + L2c LINE L2 3096 3160 -227 7 1393 521 228 0 26 chr4 105921266 105921383 -49708737 - B3A SINE B2 -84 114 1 7 1393 406 324 7 21 chr4 105921478 105921620 -49708500 - B1F2 SINE Alu -8 141 2 7 1393 1007 110 12 0 chr4 105921772 105921936 -49708184 - B2_Mm1t SINE B2 -25 168 3 7 1393 284 252 62 39 chr4 105922149 105922277 -49707843 + MIRb SINE MIR 67 197 -71 7 1393 506 224 110 14 chr4 105922296 105922441 -49707679 + RSINE1 SINE B4 4 162 -3 7 1393 540 149 0 0 chr4 105922596 105922690 -49707430 + (TA)n Simple_repeat Simple_repeat 1 94 0 7 1393 251 255 54 54 chr4 105923002 105923151 -49706969 - L1MA5 LINE L1 -123 6177 6029 7 1393 447 240 93 103 chr4 105923278 105923492 -49706628 - Lx9 LINE L1 -4 7640 7429 7 1393 207 0 0 0 chr4 105923547 105923570 -49706550 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1393 995 105 7 0 chr4 105923570 105923704 -49706416 - B1_Mus1 SINE Alu -9 139 5 7 1393 231 203 0 33 chr4 105923854 105923915 -49706205 + T-rich Low_complexity Low_complexity 2 60 0 7 1393 246 203 17 0 chr4 105923915 105923974 -49706146 - Lx8 LINE L1 0 7473 7414 7 1393 906 10 0 0 chr4 105924003 105924106 -49706014 + (TC)n Simple_repeat Simple_repeat 1 103 0 7 1393 615 251 115 22 chr4 105924109 105924292 -49705828 - Lx8 LINE L1 -150 7323 7124 7 1393 1283 238 132 18 chr4 105924293 105924627 -49705493 + Lx8 LINE L1 6390 6761 -712 7 1393 2093 140 42 6 chr4 105924746 105925106 -49705014 + ORR1D1 LTR MaLR 2 374 0 7 1393 2084 169 31 67 chr4 105925443 105925952 -49704168 - RLTR16 LTR ERVK -14 491 1 7 1393 428 256 132 77 chr4 105925952 105926278 -49703842 + ORR1E LTR MaLR 8 351 -8 7 1393 1184 68 0 0 chr4 105926374 105926521 -49703599 + B1_Mm SINE Alu 1 147 0 7 1393 433 280 111 5 chr4 105926837 105927027 -49703093 - ID_B1 SINE B4 -5 219 10 7 1393 1977 200 31 3 chr4 105927366 105927757 -49702363 + MTD LTR MaLR 5 406 -13 7 1393 197 267 137 32 chr4 105927789 105927913 -49702207 + MIRb SINE MIR 64 200 -68 7 1393 443 284 56 56 chr4 105928536 105928734 -49701386 + MIR SINE MIR 64 261 -1 7 1393 4265 111 19 6 chr4 105930323 105930967 -49699153 + Lx LINE L1 6003 6654 0 7 1393 309 270 3 23 chr4 105930981 105931091 -49699029 - Lx7 LINE L1 -4 7692 7605 7 1393 925 52 15 0 chr4 105931107 105931243 -49698877 + (TC)n Simple_repeat Simple_repeat 2 139 0 7 1393 7281 125 45 8 chr4 105931257 105932383 -49697737 + Lx4A LINE L1 5891 7058 0 7 1393 3069 187 40 11 chr4 105932408 105932981 -49697139 - Lx7 LINE L1 -273 7423 6834 7 1393 1073 258 60 72 chr4 105933039 105933373 -49696747 + ORR1D2 LTR MaLR 36 365 -5 7 1393 227 271 0 54 chr4 105933459 105933533 -49696587 + MIR SINE MIR 46 115 -147 7 1393 271 167 0 0 chr4 105933534 105933582 -49696538 - ID_B1 SINE B4 -1 223 176 7 1393 357 266 62 27 chr4 105933729 105933841 -49696279 + PB1D10 SINE Alu 1 116 -1 7 1393 590 282 33 28 chr4 105934176 105934391 -49695729 + MTE2a LTR MaLR 1 216 -163 7 1393 216 0 0 0 chr4 105934391 105934415 -49695705 + (TCC)n Simple_repeat Simple_repeat 1 24 0 7 1393 1377 101 5 0 chr4 105934415 105934604 -49695516 - B2_Mm1t SINE B2 0 193 4 7 1393 573 302 23 0 chr4 105934608 105934780 -49695340 + MTE2a LTR MaLR 204 379 0 7 1393 22 0 0 0 chr4 105935254 105935276 -49694844 + AT_rich Low_complexity Low_complexity 1 22 0 7 1393 384 330 56 119 chr4 105935904 105936331 -49693789 + MLT1N2 LTR MaLR 105 504 -58 7 1393 2678 62 12 0 chr4 105936568 105936891 -49693229 + ORR1A2 LTR MaLR 1 327 0 7 1393 213 194 0 0 chr4 105937079 105937115 -49693005 + polypyrimidine Low_complexity Low_complexity 1 36 0 7 1393 1240 282 101 55 chr4 105937647 105938154 -49691966 - Lx8 LINE L1 0 7473 6944 7 1393 1933 294 31 12 chr4 105938232 105938813 -49691307 - Lx8 LINE L1 -706 6767 6176 7 1393 2193 149 24 8 chr4 105938879 105939259 -49690861 + ORR1B1 LTR MaLR 1 386 -8 7 1393 566 269 39 18 chr4 105939391 105939627 -49690493 - Lx8 LINE L1 -1670 5974 5734 7 1393 1796 258 30 32 chr4 105939665 105940258 -49689862 - Lx8 LINE L1 -431 5449 4858 7 1393 1101 73 0 0 chr4 105940319 105940455 -49689665 + B1_Mm SINE Alu 2 137 -10 7 1393 347 21 43 0 chr4 105940455 105940502 -49689618 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1393 4787 233 55 43 chr4 105940886 105940930 -49689190 - Lx8 LINE L1 -1011 4869 4839 7 1393 1419 228 70 11 chr4 105940930 105941289 -49688831 + ORR1D1 LTR MaLR 5 384 0 7 1393 5668 192 73 44 chr4 105941289 105941539 -49688581 + ORR1D1-int LTR MaLR 1 296 -1074 7 1393 771 11 0 0 chr4 105941539 105941627 -49688493 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 7 1393 5668 192 73 44 chr4 105941627 105942707 -49687413 + ORR1D1-int LTR MaLR 297 1370 0 7 1393 1781 182 65 6 chr4 105942707 105943060 -49687060 + ORR1D1 LTR MaLR 1 374 0 7 1393 4787 233 55 43 chr4 105943060 105943227 -49686893 - Lx8 LINE L1 -1042 4838 4683 7 1393 1212 54 0 13 chr4 105943227 105943376 -49686744 + B1_Mm SINE Alu 1 147 0 7 1393 5721 224 70 36 chr4 105943376 105944940 -49685180 - Lx8 LINE L1 -1186 4694 3049 7 1393 327 203 14 40 chr4 105944993 105945108 -49685012 - Lx8 LINE L1 -3705 2178 2069 7 1393 1755 183 104 13 chr4 105945188 105945564 -49684556 - MTC LTR MaLR -11 410 1 7 1393 868 265 131 46 chr4 105945570 105946116 -49684004 - Lx8 LINE L1 -3888 1989 1389 7 1393 1386 88 0 63 chr4 105946542 105946749 -49683371 + B2_Mm2 SINE B2 2 195 0 7 1393 699 256 15 45 chr4 105947064 105947264 -49682856 - B3A SINE B2 -1 197 4 7 1393 381 233 68 30 chr4 105947510 105947688 -49682432 + B3A SINE B2 7 195 0 7 1393 328 354 78 44 chr4 105947730 105948347 -49681773 - L2 LINE L2 -927 2492 1855 7 1393 1814 170 34 9 chr4 105948854 105949204 -49680916 + RLTR15 LTR ERVK 1 359 0 7 1393 2187 127 89 23 chr4 105949752 105949831 -49680289 + MTC LTR MaLR 1 79 -342 7 1393 2373 161 44 24 chr4 105949831 105950244 -49679876 - MTC LTR MaLR 0 421 1 7 1393 2187 127 89 23 chr4 105950244 105950559 -49679561 + MTC LTR MaLR 80 421 0 7 1393 186 71 0 0 chr4 105951718 105951746 -49678374 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1393 266 0 29 0 chr4 105951748 105951782 -49678338 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1393 236 267 250 33 chr4 105951818 105951938 -49678182 - B1F SINE Alu -1 148 3 7 1393 1714 178 84 80 chr4 105952223 105952598 -49677522 + RMER10A LTR ERVL 1 386 -56 7 1393 180 0 0 0 chr4 105952598 105952618 -49677502 + (TATAA)n Simple_repeat Simple_repeat 2 21 0 7 1393 1714 178 84 80 chr4 105952618 105952682 -49677438 + RMER10A LTR ERVL 387 442 0 7 1393 328 305 11 0 chr4 105952741 105952836 -49677284 + RSINE1 SINE B4 2 97 -68 7 1393 309 26 0 0 chr4 105952840 105952878 -49677242 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1393 288 0 0 0 chr4 105952878 105952909 -49677211 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1393 203 95 48 0 chr4 105952909 105952951 -49677169 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 7 1393 237 33 0 0 chr4 105953585 105953615 -49676505 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1393 486 0 0 0 chr4 105953617 105953671 -49676449 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 7 1393 350 252 177 43 chr4 105953814 105953955 -49676165 + B3 SINE B2 2 161 -55 7 1393 351 0 0 0 chr4 105953957 105953996 -49676124 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1393 304 286 0 95 chr4 105954923 105955039 -49675081 + MT2B LTR ERVL 153 257 -344 7 1393 822 203 0 0 chr4 105954940 105955083 -49675037 + B1_Mur2 SINE Alu 6 148 -1 7 1393 423 0 0 0 chr4 105955689 105955736 -49674384 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1393 1313 286 97 12 chr4 105955784 105956269 -49673851 - L1MD2 LINE L1 -237 6122 5597 7 1393 690 267 60 11 chr4 105956312 105956494 -49673626 + B4 SINE B4 100 290 -2 7 1393 646 249 76 40 chr4 105956532 105956783 -49673337 - L1MD2 LINE L1 -767 5592 5333 7 1393 1733 174 46 6 chr4 105956787 105957133 -49672987 - ORR1D1 LTR MaLR -1 373 14 7 1393 661 253 36 31 chr4 105957145 105957337 -49672783 - L1MD2 LINE L1 -813 5333 5141 7 1393 3052 60 8 0 chr4 105957501 105957885 -49672235 + L1_Mus3 LINE L1 6238 6624 -14 7 1393 1334 84 22 0 chr4 105957885 105958063 -49672057 + B2_Mm2 SINE B2 1 182 -13 7 1393 257 54 0 26 chr4 105958094 105958132 -49671988 + B2_Mm2 SINE B2 47 83 -112 7 1393 45 45 0 0 chr4 105958136 105958202 -49671918 + AT_rich Low_complexity Low_complexity 1 66 0 7 1393 671 249 122 0 chr4 105958202 105958391 -49671729 - L1MD2 LINE L1 -1215 4931 4720 7 1393 432 219 31 10 chr4 105958408 105958505 -49671615 + PB1D10 SINE Alu 14 112 -5 7 1393 518 54 14 0 chr4 105958679 105958753 -49671367 + (TC)n Simple_repeat Simple_repeat 2 76 0 7 1393 764 250 0 12 chr4 105958763 105958925 -49671195 - B3A SINE B2 -38 160 1 7 1393 663 274 57 52 chr4 105959017 105959421 -49670699 - L1MD2 LINE L1 -1667 4479 4074 7 1393 324 207 119 181 chr4 105959432 105959510 -49670610 + MTE2b LTR MaLR 1 58 -321 7 1393 2453 114 15 18 chr4 105959510 105959902 -49670218 - ORR1B1 LTR MaLR -3 391 1 7 1393 324 207 119 181 chr4 105959902 105960000 -49670120 + MTE2b LTR MaLR 59 166 -213 7 1393 792 218 47 47 chr4 105960097 105960309 -49669811 + MTE2b LTR MaLR 166 377 -2 7 1393 346 272 80 7 chr4 105960311 105960448 -49669672 - L1MD2 LINE L1 -2078 4068 3922 7 1393 23 33 0 0 chr4 105960544 105960574 -49669546 + AT_rich Low_complexity Low_complexity 1 30 0 7 1393 711 282 31 5 chr4 105960590 105960786 -49669334 + B3 SINE B2 1 201 -15 7 1393 564 15 0 0 chr4 105960787 105960852 -49669268 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 7 1393 935 171 4 8 chr4 105960904 105961149 -49668971 + GA-rich Low_complexity Low_complexity 1 243 0 7 1393 245 342 54 72 chr4 105961208 105961485 -49668635 - L2 LINE L2 -740 2679 2408 7 1393 415 177 0 0 chr4 105961691 105961770 -49668350 + MT2A LTR ERVL 1 79 -454 8 1393 1370 53 0 4 chr4 105961774 105962004 -49668116 + (TTCC)n Simple_repeat Simple_repeat 1 228 0 8 1393 603 148 65 16 chr4 105962005 105962129 -49667991 - B1_Mus1 SINE Alu -10 138 9 8 1393 897 220 8 14 chr4 105962124 105962336 -49667784 + MT2A LTR ERVL 265 554 -47 8 1393 26 30 0 0 chr4 105962336 105962369 -49667751 + AT_rich Low_complexity Low_complexity 1 33 0 8 1393 292 81 16 0 chr4 105962436 105962498 -49667622 + MT2A LTR ERVL 471 533 0 8 1393 798 281 70 49 chr4 105962689 105963034 -49667086 - ORR1E LTR MaLR -5 354 3 8 1393 181 359 0 0 chr4 105963295 105963359 -49666761 - L2c LINE L2 0 3387 3324 8 1393 1518 115 292 0 chr4 105963573 105963826 -49666294 - ORR1A2 LTR MaLR 0 327 1 8 1393 298 298 56 16 chr4 105964211 105964337 -49665783 - MER63B DNA AcHobo 0 436 306 8 1393 382 244 35 0 chr4 105964909 105964995 -49665125 + PB1D10 SINE Alu 21 109 -8 8 1393 346 179 155 0 chr4 105965122 105965206 -49664914 + B1F2 SINE Alu 52 148 -1 8 1393 426 260 100 0 chr4 105965226 105965376 -49664744 + B4A SINE B4 81 245 -47 8 1393 456 105 0 0 chr4 105965443 105965519 -49664601 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1393 370 211 14 0 chr4 105965519 105965590 -49664530 + ID4 SINE ID 3 74 -9 8 1393 1497 195 23 81 chr4 105966403 105966584 -49663536 + ORR1D1 LTR MaLR 1 171 -203 8 1393 405 0 0 0 chr4 105966584 105966629 -49663491 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1393 1497 195 23 81 chr4 105966629 105966843 -49663277 + ORR1D1 LTR MaLR 172 373 -1 8 1393 319 189 0 0 chr4 105967190 105967243 -49662877 - B1F SINE Alu -6 143 91 8 1393 237 196 0 0 chr4 105967243 105967299 -49662821 + (CAT)n Simple_repeat Simple_repeat 1 56 0 8 1393 186 278 147 9 chr4 105967521 105967630 -49662490 + MIR SINE MIR 21 144 -118 8 1393 434 65 0 16 chr4 105968028 105968091 -49662029 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1393 1035 176 96 5 chr4 105968699 105968887 -49661233 - B3 SINE B2 -10 206 2 8 1393 563 232 77 67 chr4 105969908 105970102 -49660018 + B3A SINE B2 3 198 0 8 1393 483 63 0 0 chr4 105970223 105970286 -49659834 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 8 1393 504 0 0 0 chr4 105970610 105970666 -49659454 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1393 391 284 8 41 chr4 105971695 105971816 -49658304 - ID_B1 SINE B4 -34 190 74 8 1393 289 247 129 0 chr4 105972011 105972096 -49658024 + MER103 DNA DNA 20 115 -51 8 1393 559 250 21 14 chr4 105972465 105972607 -49657513 + ID_B1 SINE B4 80 222 -2 8 1393 1242 129 49 169 chr4 105972907 105973035 -49657085 + RLTR28 LTR ERVL 1 92 -389 8 1393 1186 55 7 0 chr4 105973035 105973181 -49656939 + B1_Mm SINE Alu 1 147 0 8 1393 228 67 0 0 chr4 105973183 105973213 -49656907 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 8 1393 1303 83 33 6 chr4 105973217 105973399 -49656721 - B2_Mm2 SINE B2 -4 191 5 8 1393 1909 144 35 101 chr4 105973399 105973828 -49656292 + RLTR28 LTR ERVL 92 510 -14 8 1393 218 320 26 13 chr4 105973816 105973892 -49656228 - B1F1 SINE Alu -72 77 1 8 1393 22 0 0 0 chr4 105974530 105974552 -49655568 + AT_rich Low_complexity Low_complexity 1 22 0 8 1393 667 131 23 8 chr4 105975105 105975236 -49654884 + CT-rich Low_complexity Low_complexity 1 133 0 8 1393 360 297 26 18 chr4 105975248 105975361 -49654759 + RMER15-int LTR ERVL 1179 1292 -3707 8 1393 615 190 190 28 chr4 105975378 105975557 -49654563 + B4A SINE B4 44 251 -41 8 1393 561 110 0 0 chr4 105975584 105975675 -49654445 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 1393 695 269 31 15 chr4 105975678 105975874 -49654246 + RMER15-int LTR ERVL 1569 1767 -3232 8 1393 731 22 0 0 chr4 105975989 105976081 -49654039 + B1_Mm SINE Alu 56 147 0 8 1393 256 185 0 97 chr4 105976247 105976319 -49653801 + 4.5SRNA scRNA scRNA 28 92 -2 8 1393 501 97 0 208 chr4 105976267 105976397 -49653723 + B1_Mus2 SINE Alu 45 147 0 8 1393 240 111 0 0 chr4 105976399 105976435 -49653685 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1393 306 0 0 0 chr4 105976828 105976862 -49653258 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 8 1393 2329 38 66 0 chr4 105976912 105977229 -49652891 - ORR1A1 LTR MaLR -8 338 1 8 1393 432 0 0 0 chr4 105977381 105977429 -49652691 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 8 1393 210 150 0 0 chr4 105977530 105977570 -49652550 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 8 1393 1994 268 76 16 chr4 105977579 105978368 -49651752 + L1M4 LINE L1 4137 4972 -1174 8 1393 432 55 0 0 chr4 105978533 105978588 -49651532 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1393 465 319 73 23 chr4 105978607 105978825 -49651295 - B4A SINE B4 -23 269 41 8 1393 354 288 30 53 chr4 105978898 105979067 -49651053 + L1M4 LINE L1 5297 5461 -722 8 1393 1863 132 13 3 chr4 105979092 105979404 -49650716 + ORR1A2 LTR MaLR 2 316 -11 8 1393 735 262 102 20 chr4 105979414 105979768 -49650352 + L1MB7 LINE L1 5522 5904 -280 8 1393 286 322 40 32 chr4 105980394 105980519 -49649601 + L1MB7 LINE L1 6044 6169 -9 8 1393 579 81 19 83 chr4 105980539 105980647 -49649473 + RMER6B LTR ERVK 1 101 -655 8 1393 1920 132 25 36 chr4 105980750 105981111 -49649009 + RMER6B LTR ERVK 100 456 -5 8 1393 2267 129 58 0 chr4 105981258 105981621 -49648499 + ORR1C2 LTR MaLR 1 384 0 8 1393 661 294 0 6 chr4 105982078 105982239 -49647881 - RSINE1 SINE B4 0 165 6 8 1393 525 293 30 35 chr4 105982300 105982498 -49647622 + L1MEg LINE L1 142 338 -5887 8 1393 439 338 55 112 chr4 105982615 105982771 -49647349 + MLT1H2 LTR MaLR 1 142 -347 8 1393 468 305 61 17 chr4 105982771 105982940 -49647180 + B3A SINE B2 1 179 -19 8 1393 249 33 0 0 chr4 105982940 105982970 -49647150 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1393 441 0 0 0 chr4 105982970 105983018 -49647102 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1393 439 338 55 112 chr4 105983027 105983253 -49646867 + MLT1H2 LTR MaLR 143 361 -128 8 1393 228 35 0 0 chr4 105983418 105983447 -49646673 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1393 264 244 43 32 chr4 105983507 105983539 -49646581 + MLT1H2 LTR MaLR 396 430 -59 8 1393 2487 74 6 9 chr4 105983539 105983867 -49646253 + ORR1A2 LTR MaLR 1 327 0 8 1393 264 244 43 32 chr4 105983867 105983927 -49646193 + MLT1H2 LTR MaLR 431 489 0 8 1393 413 221 78 56 chr4 105984019 105984185 -49645935 + B3A SINE B2 45 215 -1 8 1393 342 272 50 75 chr4 105984254 105984443 -49645677 + L1MEg LINE L1 686 878 -5347 8 1393 1169 61 0 13 chr4 105984443 105984592 -49645528 + B1_Mus1 SINE Alu 2 148 0 8 1393 342 272 50 75 chr4 105984592 105984680 -49645440 + L1MEg LINE L1 879 956 -5269 8 1393 746 163 0 0 chr4 105984682 105984805 -49645315 + B1_Mur2 SINE Alu 15 137 -12 8 1393 198 0 0 0 chr4 105984805 105984827 -49645293 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 1393 382 272 37 6 chr4 105984832 105984984 -49645136 + L1MEg LINE L1 929 1086 -5139 8 1393 578 156 7 41 chr4 105985007 105985154 -49644966 + GA-rich Low_complexity Low_complexity 3 144 0 8 1393 312 337 53 0 chr4 105985186 105985281 -49644839 + PB1D10 SINE Alu 1 100 -17 8 1393 336 267 9 0 chr4 105985314 105985419 -49644701 + L1MEg LINE L1 1244 1349 -4876 8 1393 709 137 67 67 chr4 105986260 105986409 -49643711 - B1_Mur3 SINE Alu 0 149 1 8 1393 521 246 21 42 chr4 105986532 105986676 -49643444 - ID_B1 SINE B4 -3 221 81 8 1393 345 258 0 58 chr4 105987347 105987450 -49642670 - PB1D10 SINE Alu -1 116 20 8 1393 25 65 0 0 chr4 105988742 105988788 -49641332 + GC_rich Low_complexity Low_complexity 1 46 0 8 1393 219 211 13 90 chr4 105989271 105989349 -49640771 + (CGG)n Simple_repeat Simple_repeat 2 73 0 8 1393 711 155 100 8 chr4 105990932 105991062 -49639058 - B1_Mur4 SINE Alu -6 144 3 8 1393 341 164 0 14 chr4 105991956 105992030 -49638090 + CT-rich Low_complexity Low_complexity 2 74 0 8 1393 247 310 28 0 chr4 105992327 105992398 -49637722 + ID4_ SINE ID 1 73 -10 8 1393 210 128 0 0 chr4 105993952 105993991 -49636129 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 8 1393 307 300 32 103 chr4 105994028 105994184 -49635936 - B4 SINE B4 -65 227 83 8 1393 602 224 132 6 chr4 105994199 105994365 -49635755 - B3 SINE B2 -4 212 26 8 1393 180 0 0 0 chr4 105994681 105994701 -49635419 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1393 503 237 11 0 chr4 105994705 105994816 -49635304 - B1F2 SINE Alu -19 130 18 8 1393 261 57 0 0 chr4 105994887 105994922 -49635198 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1393 1344 101 11 0 chr4 105995005 105995194 -49634926 - B2_Mm1t SINE B2 -1 192 2 8 1393 261 178 81 54 chr4 105995599 105995611 -49634509 - B1F SINE Alu 0 149 116 8 1393 329 148 0 0 chr4 105995611 105995665 -49634455 - ID_B1 SINE B4 -8 216 163 8 1393 261 178 81 54 chr4 105995665 105995698 -49634422 - B1F SINE Alu 0 115 11 8 1393 633 228 174 22 chr4 105996054 105996238 -49633882 + B3 SINE B2 5 216 0 8 1393 245 208 57 0 chr4 105996563 105996616 -49633504 - L1MC4 LINE L1 -1498 6544 6489 8 1393 883 154 84 72 chr4 105996754 105997005 -49633115 - RLTR11B LTR ERVK 0 453 200 8 1393 227 58 0 115 chr4 105997005 105997083 -49633037 + CT-rich Low_complexity Low_complexity 1 69 0 8 1393 420 233 26 8 chr4 105997450 105997567 -49632553 + B3A SINE B2 2 120 -78 8 1393 2017 132 78 3 chr4 105998220 105998577 -49631543 - ORR1B1 LTR MaLR -8 386 3 8 1393 197 365 0 0 chr4 105998994 105999057 -49631063 - MIR SINE MIR -55 153 91 8 1393 215 0 67 0 chr4 105999187 105999217 -49630903 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 8 1393 1754 201 33 21 chr4 105999258 105999651 -49630469 - ORR1B1 LTR MaLR -8 386 5 8 1393 611 263 230 26 chr4 106000002 106000381 -49629739 - MT2A LTR ERVL -77 456 1 1 1393 420 135 0 0 chr4 106000853 106000927 -49629193 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 2 1393 998 32 0 0 chr4 106000928 106001052 -49629068 - B1_Mus2 SINE Alu 0 147 24 3 1393 1288 20 0 0 chr4 106001072 106001219 -49628901 + B1_Mus2 SINE Alu 1 147 0 4 1393 891 269 75 88 chr4 106001494 106001822 -49628298 - MTEb LTR MaLR -9 370 43 5 1393 1151 64 21 197 chr4 106001822 106001852 -49628268 - B2_Mm1t SINE B2 0 193 161 6 1393 243 0 0 0 chr4 106001852 106001879 -49628241 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1393 1151 64 21 197 chr4 106001879 106002081 -49628039 - B2_Mm1t SINE B2 -33 160 2 6 1393 891 269 75 88 chr4 106002081 106002127 -49627993 - MTEb LTR MaLR -337 42 1 5 1393 376 243 110 18 chr4 106002499 106002608 -49627512 - B1_Mur1 SINE Alu -1 148 30 8 1393 202 68 22 43 chr4 106002616 106002662 -49627458 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 9 1393 182 138 0 0 chr4 106003552 106003581 -49626539 - L3 LINE CR1 -15 4474 4446 1 1393 211 28 27 27 chr4 106003683 106003720 -49626400 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1393 1179 75 0 0 chr4 106003731 106003878 -49626242 - B1_Mus1 SINE Alu 0 148 2 1 1393 461 289 9 0 chr4 106003910 106004024 -49626096 - PB1D7 SINE Alu -5 115 1 1 1393 333 234 101 50 chr4 106004024 106004123 -49625997 - PB1D7 SINE Alu -6 114 8 1 1393 1038 117 7 0 chr4 106004554 106004699 -49625421 - B1_Mm SINE Alu 0 147 2 1 1393 1474 58 11 0 chr4 106004710 106004900 -49625220 - B2_Mm1t SINE B2 0 193 2 1 1393 1349 159 122 0 chr4 106005773 106006044 -49624076 + MTD LTR MaLR 116 419 0 1 1393 1217 219 112 12 chr4 106006234 106006572 -49623548 - ORR1D1 LTR MaLR 0 374 3 1 1393 218 291 35 112 chr4 106006752 106006868 -49623252 - MIR SINE MIR -115 161 52 1 1393 23 0 0 0 chr4 106006964 106006987 -49623133 + AT_rich Low_complexity Low_complexity 1 23 0 2 1393 337 227 88 26 chr4 106007093 106007206 -49622914 - PB1D7 SINE Alu 0 120 1 2 1393 935 243 5 37 chr4 106007235 106007449 -49622671 - B3 SINE B2 -9 207 1 2 1393 396 0 0 0 chr4 106007618 106007662 -49622458 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1393 180 0 0 0 chr4 106007662 106007681 -49622439 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 2 1393 310 198 299 11 chr4 106007682 106007769 -49622351 - RSINE1 SINE B4 -45 120 9 2 1393 1409 70 16 0 chr4 106008247 106008433 -49621687 - B2_Mm2 SINE B2 -6 189 1 2 1393 542 195 55 36 chr4 106008495 106008646 -49621474 - B1_Mur3 SINE Alu -1 148 5 2 1393 257 136 0 48 chr4 106010290 106010317 -49619803 + T-rich Low_complexity Low_complexity 35 59 0 2 1393 1057 46 69 0 chr4 106010317 106010448 -49619672 - B1_Mm SINE Alu -7 140 1 2 1393 257 136 0 48 chr4 106010448 106010482 -49619638 + T-rich Low_complexity Low_complexity 1 34 0 3 1393 596 301 46 32 chr4 106010662 106011009 -49619111 - L1MB7 LINE L1 -91 6093 5742 3 1393 768 129 9 0 chr4 106011427 106011543 -49618577 + PB1D9 SINE Alu 1 117 -3 3 1393 393 351 141 0 chr4 106011762 106012027 -49618093 - MLT1G LTR MaLR -116 475 182 3 1393 710 222 33 38 chr4 106012677 106012860 -49617260 + B3A SINE B2 1 182 -16 3 1393 362 115 16 0 chr4 106012860 106012921 -49617199 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1393 1145 68 7 0 chr4 106013131 106013277 -49616843 - B1_Mus1 SINE Alu 0 148 2 3 1393 553 304 7 26 chr4 106014558 106014710 -49615410 + RSINE1 SINE B4 2 150 -15 3 1393 664 152 108 38 chr4 106015388 106015536 -49614584 - Lx9 LINE L1 -5 7639 7481 3 1393 381 43 0 0 chr4 106015536 106015583 -49614537 + (TAGG)n Simple_repeat Simple_repeat 4 50 0 3 1393 664 152 108 38 chr4 106015583 106015619 -49614501 - Lx9 LINE L1 -164 7480 7442 3 1393 676 167 83 7 chr4 106015615 106015760 -49614360 + Lx9 LINE L1 6965 7120 -524 4 1393 609 290 63 44 chr4 106016526 106016730 -49613390 + B3A SINE B2 1 188 -7 4 1393 815 137 0 30 chr4 106017594 106017729 -49612391 + B1_Mus1 SINE Alu 11 141 -7 4 1393 283 280 90 0 chr4 106017876 106017976 -49612144 + PB1D10 SINE Alu 3 111 -6 4 1393 309 109 0 0 chr4 106018418 106018464 -49611656 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1393 695 175 33 0 chr4 106018817 106018937 -49611183 + B1_Mur2 SINE Alu 21 144 -5 4 1393 778 164 107 6 chr4 106020834 106020993 -49609127 - B2_Mm2 SINE B2 -20 175 1 4 1393 350 219 61 61 chr4 106021431 106021562 -49608558 - RLTR42-int LTR ERVK -4134 1388 1258 4 1393 343 344 95 27 chr4 106022606 106022902 -49607218 - L1MEg LINE L1 -4614 1470 1155 4 1393 448 315 160 19 chr4 106023104 106023360 -49606760 - L1MEg LINE L1 -4966 1118 827 4 1393 23 33 0 0 chr4 106023737 106023767 -49606353 + AT_rich Low_complexity Low_complexity 1 30 0 4 1393 211 220 58 39 chr4 106023861 106023913 -49606207 + PB1D10 SINE Alu 65 117 0 5 1393 921 132 36 36 chr4 106024109 106024274 -49605846 + B2_Mm2 SINE B2 1 165 -30 5 1393 309 109 0 0 chr4 106024288 106024334 -49605786 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 5 1393 216 97 0 0 chr4 106024330 106024361 -49605759 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 5 1393 773 257 176 26 chr4 106024683 106024831 -49605289 - ORR1E LTR MaLR 0 359 185 5 1393 279 0 0 0 chr4 106024831 106024862 -49605258 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1393 773 257 176 26 chr4 106024862 106025025 -49605095 - ORR1E LTR MaLR -175 184 1 5 1393 259 260 82 0 chr4 106025439 106025512 -49604608 + B4 SINE B4 49 127 -165 5 1393 419 338 148 40 chr4 106026543 106026916 -49603204 - L1MC LINE L1 -2140 5742 5330 5 1393 573 291 44 0 chr4 106026986 106027144 -49602976 - RSINE1 SINE B4 0 165 1 5 1393 257 301 32 0 chr4 106027620 106027743 -49602377 - L1M5 LINE L1 -1549 4597 4471 5 1393 216 0 0 0 chr4 106027769 106027793 -49602327 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1393 1432 75 11 0 chr4 106027852 106028039 -49602081 + B2_Mm1t SINE B2 3 191 -2 6 1393 341 282 123 80 chr4 106028829 106028991 -49601129 - B4A SINE B4 -123 169 1 6 1393 1055 55 0 0 chr4 106029234 106029362 -49600758 - B1_Mus2 SINE Alu -19 128 1 6 1393 889 258 14 5 chr4 106029567 106029781 -49600339 - ID_B1 SINE B4 -7 217 2 6 1393 441 176 167 0 chr4 106030615 106030717 -49599403 + B1_Mur1 SINE Alu 31 149 0 6 1393 225 287 48 19 chr4 106030809 106030912 -49599208 - MIRc SINE MIR -118 150 45 6 1393 265 224 0 65 chr4 106033408 106033470 -49596650 + B3 SINE B2 148 205 -11 6 1393 22 56 0 0 chr4 106035576 106035612 -49594508 + AT_rich Low_complexity Low_complexity 1 36 0 6 1393 21 0 0 0 chr4 106036150 106036171 -49593949 + AT_rich Low_complexity Low_complexity 1 21 0 6 1394 245 301 0 0 chr4 106037459 106037532 -49592588 - MER46C DNA MER2_type -13 325 253 7 1394 185 319 65 57 chr4 106037821 106037944 -49592176 + L3 LINE CR1 4103 4226 -263 7 1394 594 292 113 0 chr4 106038662 106038847 -49591273 + ID_B1 SINE B4 11 216 -8 7 1394 233 258 45 0 chr4 106039004 106039070 -49591050 - ID4 SINE ID -11 72 4 7 1394 601 291 73 31 chr4 106039307 106039566 -49590554 - Kanga11a DNA Tc2 -663 307 38 7 1394 989 235 9 32 chr4 106041639 106041859 -49588261 - B3 SINE B2 0 216 2 7 1394 24 0 0 0 chr4 106041958 106041982 -49588138 + AT_rich Low_complexity Low_complexity 1 24 0 7 1394 498 250 6 119 chr4 106041986 106042032 -49588088 + B1F SINE Alu 1 42 -107 7 1394 1246 128 27 31 chr4 106042032 106042257 -49587863 - URR1A DNA MER1_type 0 226 3 7 1394 498 250 6 119 chr4 106042257 106042378 -49587742 + B1F SINE Alu 43 149 0 7 1394 257 252 162 36 chr4 106043229 106043340 -49586780 + MIRb SINE MIR 121 245 -23 7 1394 811 238 99 32 chr4 106044271 106044896 -49585224 - L1M4 LINE L1 -2188 5807 5111 8 1394 589 227 67 0 chr4 106044920 106045039 -49585081 - B1_Mur1 SINE Alu -7 142 16 8 1394 299 301 103 83 chr4 106045039 106045071 -49585049 - B4 SINE B4 -68 219 66 8 1394 22 35 0 0 chr4 106046435 106046464 -49583656 + AT_rich Low_complexity Low_complexity 1 29 0 8 1394 502 281 170 30 chr4 106046808 106047043 -49583077 + B4A SINE B4 11 278 -14 8 1394 1165 23 0 0 chr4 106047145 106047278 -49582842 + B1_Mm SINE Alu 3 135 -12 8 1394 180 0 0 0 chr4 106047279 106047299 -49582821 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1394 417 86 0 0 chr4 106047838 106047896 -49582224 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1394 383 333 7 29 chr4 106047897 106048033 -49582087 - RSINE1 SINE B4 -31 134 2 8 1394 560 285 107 15 chr4 106048025 106048221 -49581899 + MER20 DNA MER1_type 4 217 -2 8 1394 450 0 0 0 chr4 106048742 106048792 -49581328 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1394 224 286 0 0 chr4 106048987 106049043 -49581077 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1394 834 297 96 0 chr4 106050341 106050570 -49579550 + B4A SINE B4 41 291 -1 9 1394 253 191 103 35 chr4 106051535 106051622 -49578498 + B2_Mm2 SINE B2 3 95 -100 9 1394 480 319 14 7 chr4 106052412 106052554 -49577566 + B4 SINE B4 1 143 -149 9 1394 25 65 0 0 chr4 106052828 106052874 -49577246 + AT_rich Low_complexity Low_complexity 1 46 0 9 1394 279 0 0 0 chr4 106052874 106052905 -49577215 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1394 180 111 0 0 chr4 106052905 106052931 -49577189 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 9 1394 843 305 80 99 chr4 106053439 106053955 -49576165 - RLTR18B LTR ERVK -2 510 5 9 1394 504 189 83 19 chr4 106054054 106054162 -49575958 + PB1D10 SINE Alu 2 116 -1 9 1394 252 216 59 0 chr4 106054177 106054228 -49575892 + ID4 SINE ID 30 83 0 1 1394 39 22 0 0 chr4 106054228 106054274 -49575846 + AT_rich Low_complexity Low_complexity 1 46 0 1 1394 1553 43 5 0 chr4 106055245 106055433 -49574687 - B2_Mm1t SINE B2 -4 189 1 1 1394 952 262 90 33 chr4 106055605 106055940 -49574180 - MLT1A0 LTR MaLR -2 363 10 1 1394 607 243 58 17 chr4 106058874 106059046 -49571074 + B3 SINE B2 11 189 -27 1 1394 295 340 0 0 chr4 106059195 106059301 -49570819 - B1F SINE Alu -2 147 42 1 1394 285 318 132 26 chr4 106059435 106059700 -49570420 - L2a LINE L2 -36 3390 3098 1 1394 262 333 22 0 chr4 106059882 106059972 -49570148 - L2a LINE L2 -558 2861 2770 1 1394 237 224 0 0 chr4 106061325 106061383 -49568737 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1394 213 65 0 0 chr4 106061591 106061622 -49568498 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1394 1131 50 14 0 chr4 106061624 106061764 -49568356 - B1_Mus2 SINE Alu -1 146 5 1 1394 400 237 52 0 chr4 106062117 106062214 -49567906 - B4 SINE B4 -74 218 117 1 1394 586 203 105 0 chr4 106062332 106062465 -49567655 - B1_Mur2 SINE Alu 0 149 3 1 1394 250 278 28 0 chr4 106063901 106063973 -49566147 + L2 LINE L2 2989 3062 -357 1 1394 2209 94 6 9 chr4 106065375 106065708 -49564412 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1394 15326 41 5 3 chr4 106065710 106067508 -49562612 - IAPEz-int LTR ERVK -2 6479 4678 1 1394 1931 82 4 0 chr4 106067526 106067771 -49562349 - IAPEz-int LTR ERVK -5183 2497 2252 1 1394 962 59 0 0 chr4 106067772 106067891 -49562229 - IAPEz-int LTR ERVK -5004 1477 1359 1 1394 3664 80 19 23 chr4 106067891 106068696 -49561424 - IAPEz-int LTR ERVK -5819 662 3 1 1394 2201 97 6 9 chr4 106068700 106069033 -49561087 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1394 324 64 0 0 chr4 106069179 106069226 -49560894 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1394 1167 68 6 0 chr4 106069226 106069388 -49560732 - B2_Mm1t SINE B2 -30 163 1 1 1394 976 103 0 94 chr4 106069533 106069693 -49560427 - B1_Mus2 SINE Alu -1 146 2 1 1394 818 277 182 18 chr4 106070217 106070772 -49559348 - L1M3 LINE L1 -1554 4586 3941 1 1394 399 21 0 0 chr4 106071029 106071077 -49559043 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1394 324 70 0 0 chr4 106071240 106071283 -49558837 + (TAG)n Simple_repeat Simple_repeat 3 45 0 1 1394 226 67 0 43 chr4 106071795 106071842 -49558278 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 1 1394 1189 48 7 0 chr4 106071851 106071996 -49558124 - B1_Mus2 SINE Alu -1 146 1 1 1394 703 220 77 39 chr4 106072216 106072424 -49557696 - B3 SINE B2 0 216 1 1 1394 190 313 15 0 chr4 106072839 106072906 -49557214 - L4 LINE RTE -279 1750 1683 1 1394 22 0 0 0 chr4 106075689 106075711 -49554409 + AT_rich Low_complexity Low_complexity 1 22 0 1 1394 310 295 45 39 chr4 106076951 106077106 -49553014 - RSINE1 SINE B4 -8 157 2 1 1394 1037 78 92 0 chr4 106077471 106077624 -49552496 + B2_Mm2 SINE B2 15 181 -14 1 1394 325 73 333 27 chr4 106077676 106077787 -49552333 + B2_Mm2 SINE B2 47 191 -4 1 1394 424 155 0 23 chr4 106077909 106077995 -49552125 + B1_Mus2 SINE Alu 63 146 -1 1 1394 254 263 27 116 chr4 106078599 106078645 -49551475 + L2c LINE L2 3280 3381 -6 1 1394 312 231 0 15 chr4 106078645 106078711 -49551409 + MIRm SINE MIR 208 272 -4 1 1394 537 250 105 7 chr4 106079977 106080130 -49549990 + B3A SINE B2 1 168 -30 1 1394 288 239 42 0 chr4 106081540 106081611 -49548509 + ID4 SINE ID 2 75 -8 1 1394 189 0 0 0 chr4 106081619 106081640 -49548480 + (G)n Simple_repeat Simple_repeat 1 21 0 1 1394 459 0 0 0 chr4 106082554 106082605 -49547515 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1394 391 297 50 0 chr4 106083065 106083166 -49546954 - PB1D10 SINE Alu -11 106 1 1 1394 1427 95 0 5 chr4 106084099 106084289 -49545831 - B2_Mm2 SINE B2 -6 189 1 1 1394 700 199 38 22 chr4 106084866 106085051 -49545069 + B3 SINE B2 28 215 -1 1 1394 406 0 0 36 chr4 106085428 106085484 -49544636 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1394 800 157 44 7 chr4 106085484 106085619 -49544501 - B1_Mur2 SINE Alu -9 140 1 1 1394 309 284 147 0 chr4 106086776 106086878 -49543242 - ID_B1 SINE B4 -1 223 107 1 1394 1146 37 0 0 chr4 106087270 106087404 -49542716 - B1_Mus2 SINE Alu -12 135 2 1 1394 702 115 12 41 chr4 106088976 106089148 -49540972 + CT-rich Low_complexity Low_complexity 5 171 0 1 1394 216 0 0 0 chr4 106091003 106091027 -49539093 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1394 212 0 0 35 chr4 106094217 106094246 -49535874 + (CATTA)n Simple_repeat Simple_repeat 5 32 0 1 1394 2967 31 0 5 chr4 106094255 106094642 -49535478 - ORR1A1-int LTR MaLR -49 1743 1359 1 1394 2023 33 69 4 chr4 106094669 106094946 -49535174 - ORR1A1-int LTR MaLR -73 1025 731 1 1394 2147 40 64 3 chr4 106094954 106095252 -49534868 - MT-int LTR MaLR -73 1025 710 1 1394 206 313 91 0 chr4 106095630 106095729 -49534391 - MIRc SINE MIR -14 254 147 1 1394 199 255 206 34 chr4 106096493 106096639 -49533481 + MIRb SINE MIR 83 253 -15 1 1394 1145 248 92 26 chr4 106097099 106097477 -49532643 - MTD LTR MaLR -1 378 1 1 1394 1128 140 5 19 chr4 106098451 106098662 -49531458 + Lx LINE L1 6445 6652 -2 1 1394 565 225 48 21 chr4 106100505 106100650 -49529470 + B3A SINE B2 50 198 0 1 1394 1016 86 58 0 chr4 106101228 106101367 -49528753 - B1_Mus1 SINE Alu 0 148 2 1 1394 426 144 40 63 chr4 106102201 106102327 -49527793 - Lx4A LINE L1 0 7058 6936 1 1394 5722 186 37 46 chr4 106105065 106106399 -49523721 + RMER12 LTR ERVK 1 1322 0 1 1394 432 241 269 29 chr4 106106403 106106578 -49523542 - L1MB2 LINE L1 -184 5987 5771 1 1394 1436 40 40 0 chr4 106107315 106107488 -49522632 + B2_Mm2 SINE B2 2 181 -14 1 1394 914 198 47 16 chr4 106107802 106107992 -49522128 - B3A SINE B2 -1 197 2 1 1394 620 239 178 12 chr4 106108095 106108264 -49521856 - B3A SINE B2 0 198 2 1 1394 327 301 111 87 chr4 106108338 106108717 -49521403 - MER44B DNA MER2_type -119 431 43 1 1394 187 222 44 0 chr4 106115274 106115319 -49514801 + MIR SINE MIR 100 146 -62 1 1394 182 317 0 0 chr4 106116508 106116568 -49513552 + L2a LINE L2 3041 3100 -326 1 1394 217 311 133 8 chr4 106117563 106117683 -49512437 + MIRb SINE MIR 2 136 -132 1 1394 1689 102 0 13 chr4 106118108 106118336 -49511784 + URR1B DNA MER1_type 1 225 0 1 1394 674 284 25 115 chr4 106120446 106120760 -49509360 + RLTR11B LTR ERVK 1 286 -167 1 1394 343 265 37 68 chr4 106120779 106120941 -49509179 + RLTR11B LTR ERVK 239 395 -58 1 1394 466 340 57 38 chr4 106122940 106123151 -49506969 + MLT2D LTR ERVL 39 253 -161 1 1394 976 190 157 46 chr4 106123233 106123610 -49506510 + MT2B LTR ERVL 1 540 -61 1 1394 1590 224 122 12 chr4 106123698 106124123 -49505997 + Lx8 LINE L1 6423 6894 -579 1 1394 363 265 44 29 chr4 106124206 106124342 -49505778 + Lx8 LINE L1 6895 7032 -441 1 1394 403 176 0 21 chr4 106124344 106124437 -49505683 + G-rich Low_complexity Low_complexity 3 93 0 1 1394 761 281 134 58 chr4 106124438 106124887 -49505233 + Lx8 LINE L1 6988 7470 -3 1 1394 501 110 0 0 chr4 106126004 106126077 -49504043 + B3A SINE B2 3 75 -123 1 1394 215 292 35 103 chr4 106126077 106126149 -49503971 + BC1_Mm scRNA scRNA 3 137 -15 1 1394 238 346 39 0 chr4 106127383 106127487 -49502633 - MIR SINE MIR -121 141 34 1 1394 774 239 13 109 chr4 106127972 106128202 -49501918 + B3 SINE B2 5 212 -4 1 1394 2722 111 37 0 chr4 106128898 106129278 -49500842 + ORR1B1 LTR MaLR 1 394 0 1 1394 384 308 0 0 chr4 106130245 106130352 -49499768 + PB1D10 SINE Alu 1 107 -10 1 1394 190 379 15 0 chr4 106134081 106134147 -49495973 + MIRc SINE MIR 61 127 -141 1 1394 234 331 96 60 chr4 106134585 106134752 -49495368 - MER46C DNA MER2_type -162 176 4 1 1394 182 330 60 9 chr4 106134776 106134892 -49495228 + L2c LINE L2 3023 3144 -243 1 1394 699 75 0 0 chr4 106135067 106135161 -49494959 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 1 1394 578 192 0 0 chr4 106135287 106135386 -49494734 - PB1D10 SINE Alu -2 115 17 1 1394 273 163 0 0 chr4 106136434 106136483 -49493637 + (CAG)n Simple_repeat Simple_repeat 1 49 0 1 1394 441 0 0 0 chr4 106137341 106137390 -49492730 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1394 216 0 0 0 chr4 106137390 106137413 -49492707 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1394 504 0 0 0 chr4 106137930 106137986 -49492134 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1394 901 130 0 28 chr4 106138321 106138503 -49491617 + C-rich Low_complexity Low_complexity 3 179 0 1 1394 1430 143 13 5 chr4 106138532 106138756 -49491364 + URR1A DNA MER1_type 1 226 0 1 1394 460 308 44 6 chr4 106138980 106139140 -49490980 + MLT1C LTR MaLR 300 465 -2 1 1394 640 248 194 90 chr4 106139269 106139579 -49490541 - MTE2b LTR MaLR -11 368 27 1 1394 4021 194 72 17 chr4 106140692 106140875 -49489245 + Lx9 LINE L1 6583 6762 -882 1 1394 2569 137 10 23 chr4 106140875 106141271 -49488849 - ORR1B1 LTR MaLR -3 391 1 1 1394 4021 194 72 17 chr4 106141271 106141976 -49488144 + Lx9 LINE L1 6763 7520 -124 1 1394 356 111 14 0 chr4 106141978 106142050 -49488070 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 1 1394 258 32 0 0 chr4 106142454 106142485 -49487635 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1394 234 0 0 0 chr4 106142485 106142510 -49487610 + (CTCA)n Simple_repeat Simple_repeat 4 29 0 1 1394 234 279 94 39 chr4 106143292 106143419 -49486701 - ORR1E LTR MaLR -225 134 1 1 1394 1044 95 0 0 chr4 106144174 106144380 -49485740 + (CA)n Simple_repeat Simple_repeat 1 206 0 1 1394 230 157 19 38 chr4 106144767 106144820 -49485300 + GA-rich Low_complexity Low_complexity 2 53 0 1 1394 476 252 101 8 chr4 106145180 106145374 -49484746 + L1MA6 LINE L1 6046 6253 -47 1 1394 448 286 8 8 chr4 106145924 106146044 -49484076 - PB1D7 SINE Alu 0 120 1 1 1394 1424 60 38 5 chr4 106146088 106146272 -49483848 - B2_Mm2 SINE B2 -5 190 1 2 1394 328 259 18 38 chr4 106146311 106146424 -49483696 + B1F2 SINE Alu 1 105 -44 2 1394 180 0 0 0 chr4 106149536 106149556 -49480564 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1394 282 372 41 0 chr4 106150207 106150328 -49479792 - L2b LINE L2 -2 3373 3248 2 1394 3043 161 31 2 chr4 106150753 106151295 -49478825 - RLTR20B2 LTR ERVK -2 558 1 2 1394 270 0 0 0 chr4 106152234 106152264 -49477856 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 2 1394 186 263 0 0 chr4 106153966 106154004 -49476116 + MIRm SINE MIR 99 136 -140 2 1394 378 350 108 0 chr4 106154460 106154646 -49475474 - MIRb SINE MIR -20 248 43 2 1394 198 71 0 0 chr4 106155884 106155912 -49474208 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 1394 252 321 27 9 chr4 106155982 106156092 -49474028 - Tigger15a DNA TcMar -2 713 602 2 1394 234 234 122 61 chr4 106156563 106156645 -49473475 + L2c LINE L2 3283 3369 -18 2 1394 347 331 135 5 chr4 106158087 106158272 -49471848 + MIR SINE MIR 36 244 -18 2 1394 801 136 13 7 chr4 106158286 106158441 -49471679 + GA-rich Low_complexity Low_complexity 4 159 0 2 1394 223 62 0 30 chr4 106158441 106158457 -49471663 + (GA)n Simple_repeat Simple_repeat 1 16 0 2 1394 1230 67 0 17 chr4 106158457 106158638 -49471482 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2 1394 223 62 0 30 chr4 106158638 106158654 -49471466 + (GA)n Simple_repeat Simple_repeat 1 16 0 2 1394 219 336 96 0 chr4 106158820 106158924 -49471196 - MIRm SINE MIR -134 142 29 2 1394 185 323 82 59 chr4 106160233 106160368 -49469752 + MIRb SINE MIR 23 160 -108 2 1394 389 292 58 71 chr4 106161404 106161629 -49468491 + L1MB3 LINE L1 5852 6073 -110 2 1394 605 247 43 38 chr4 106162090 106162275 -49467845 + HAL1-2a_MD LINE L1 2336 2521 -503 2 1394 204 333 73 0 chr4 106163062 106163158 -49466962 - MIRc SINE MIR -164 104 2 2 1394 226 291 80 18 chr4 106163628 106163774 -49466346 - MIRm SINE MIR -117 159 1 2 1394 241 258 82 35 chr4 106163774 106163860 -49466260 + MIR SINE MIR 96 207 -61 2 1394 423 0 0 0 chr4 106163976 106164023 -49466097 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1394 279 253 126 0 chr4 106165225 106165320 -49464800 - MIR SINE MIR -97 165 59 2 1394 429 20 0 0 chr4 106165563 106165613 -49464507 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 2 1394 216 171 0 0 chr4 106165645 106165680 -49464440 + (ACTG)n Simple_repeat Simple_repeat 3 37 0 2 1394 21 36 0 0 chr4 106166987 106167015 -49463105 + AT_rich Low_complexity Low_complexity 1 28 0 2 1394 403 347 37 40 chr4 106167127 106167496 -49462624 + Lx7 LINE L1 6915 7291 -182 2 1394 580 267 40 0 chr4 106167863 106168013 -49462107 - RMER30 DNA MER1_type -45 157 2 2 1395 742 259 205 38 chr4 106168458 106168992 -49461128 + L2a LINE L2 2736 3377 -49 2 1395 244 176 42 56 chr4 106170382 106170454 -49459666 + G-rich Low_complexity Low_complexity 3 73 0 2 1395 1086 107 59 6 chr4 106170994 106171164 -49458956 + B2_Mm2 SINE B2 1 179 -16 2 1395 879 235 228 16 chr4 106172880 106173191 -49456929 + MTEa LTR MaLR 3 379 0 2 1395 207 368 63 0 chr4 106173392 106173487 -49456633 + L2b LINE L2 3287 3410 -16 2 1395 478 215 32 0 chr4 106173995 106174088 -49456032 - PB1D10 SINE Alu -17 100 5 2 1395 305 209 117 15 chr4 106174551 106174640 -49455480 + ID_B1 SINE B4 61 151 -73 2 1395 278 260 85 19 chr4 106174876 106174982 -49455138 + MIR SINE MIR 21 133 -129 2 1395 234 328 94 8 chr4 106175765 106175882 -49454238 + MIRb SINE MIR 125 251 -17 2 1395 724 228 180 0 chr4 106176271 106176438 -49453682 + B3 SINE B2 2 198 -18 2 1395 996 161 0 0 chr4 106176444 106176593 -49453527 - B1_Mur4 SINE Alu 0 150 2 2 1395 196 272 73 42 chr4 106179565 106179661 -49450459 - L2 LINE L2 -2048 1371 1273 2 1395 239 310 0 0 chr4 106180438 106180496 -49449624 + B1_Mus1 SINE Alu 43 100 -48 2 1395 285 183 23 68 chr4 106180613 106180645 -49449475 + MYSERV6-int LTR ERVK 6406 6432 -2527 2 1395 1487 78 0 5 chr4 106180645 106180838 -49449282 + B2_Mm2 SINE B2 3 194 -1 2 1395 285 183 23 68 chr4 106180838 106180893 -49449227 + MYSERV6-int LTR ERVK 6433 6489 -2470 2 1395 788 62 257 0 chr4 106180942 106181055 -49449065 + B1_Mus1 SINE Alu 2 143 -5 2 1395 318 50 0 0 chr4 106181058 106181098 -49449022 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 1395 261 238 0 73 chr4 106181103 106181116 -49449004 + ID_B1 SINE B4 151 213 -11 2 1395 468 36 0 0 chr4 106181116 106181171 -49448949 + B1_Mur4 SINE Alu 85 139 -11 2 1395 258 32 0 0 chr4 106181171 106181202 -49448918 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1395 261 268 81 116 chr4 106181681 106181854 -49448266 + MT2B LTR ERVL 122 288 -313 2 1395 561 248 8 60 chr4 106181728 106181861 -49448259 + B1_Mur3 SINE Alu 18 143 -6 2 1395 204 158 0 0 chr4 106181861 106181899 -49448221 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 1395 2781 254 39 47 chr4 106181997 106182982 -49447138 + MYSERV16_I-int LTR ERVK 5 877 -1449 2 1395 263 282 186 45 chr4 106182982 106183138 -49446982 + RMER4A LTR ERVK 260 437 -29 2 1395 739 186 11 27 chr4 106183138 106183326 -49446794 + MYSERV16_I-int LTR ERVK 1034 1218 -1108 2 1395 1186 128 12 0 chr4 106183326 106183498 -49446622 + B2_Mm1t SINE B2 1 174 -19 2 1395 239 176 376 9 chr4 106183527 106183636 -49446484 + B2_Mm2 SINE B2 47 195 0 2 1395 2433 220 103 67 chr4 106183655 106183800 -49446320 + MYSERV6-int LTR ERVK 7861 7997 -962 2 1395 1323 91 6 0 chr4 106183800 106183976 -49446144 - B2_Mm1t SINE B2 -14 179 3 2 1395 2433 220 103 67 chr4 106183976 106184889 -49445231 + MYSERV6-int LTR ERVK 7998 8957 -2 2 1395 2878 135 77 10 chr4 106184894 106185388 -49444732 + RLTR11A2 LTR ERVK 1 527 0 2 1395 698 273 50 3 chr4 106185874 106186104 -49444016 - B4A SINE B4 -44 248 5 2 1395 851 160 184 47 chr4 106186151 106186341 -49443779 - B3 SINE B2 0 216 1 2 1395 186 267 82 16 chr4 106186389 106186450 -49443670 + L2c LINE L2 3243 3307 -80 2 1395 223 302 92 37 chr4 106187725 106187921 -49442199 - MIRc SINE MIR -49 219 18 2 1395 342 0 0 0 chr4 106188023 106188061 -49442059 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 2 1395 324 319 101 68 chr4 106188061 106188204 -49441916 - HAL1-3A_ME LINE L1 -421 2437 2283 2 1395 300 203 16 0 chr4 106188204 106188268 -49441852 - ID4 SINE ID -18 65 1 2 1395 324 319 101 68 chr4 106188268 106188343 -49441777 - HAL1-3A_ME LINE L1 -576 2282 2212 2 1395 566 325 96 28 chr4 106188417 106188708 -49441412 - MLT1E1A LTR MaLR 0 680 370 2 1395 256 261 0 2 chr4 106188877 106188934 -49441186 - MLT1E1A LTR MaLR -598 56 1 2 1395 627 320 118 31 chr4 106189453 106189545 -49440575 - L1MB8 LINE L1 -2 6176 6091 2 1395 1631 37 5 0 chr4 106189545 106189734 -49440386 + B2_Mm1a SINE B2 1 190 -3 2 1395 627 320 118 31 chr4 106189734 106190183 -49439937 - L1MB8 LINE L1 -88 6090 5588 2 1395 1139 14 7 0 chr4 106191909 106192049 -49438071 - L1Md_A LINE L1 0 6582 6442 2 1395 2375 166 23 0 chr4 106192143 106192528 -49437592 - ORR1B1 LTR MaLR 0 394 1 2 1395 7117 172 49 32 chr4 106192541 106194002 -49436118 - ORR1B1-int LTR MaLR -24 1485 1 2 1395 2210 142 77 0 chr4 106194002 106194368 -49435752 - ORR1B1 LTR MaLR 0 394 1 2 1395 1246 235 97 20 chr4 106195146 106195498 -49434622 - MTE2b LTR MaLR 0 379 1 2 1395 835 306 65 14 chr4 106195621 106195896 -49434224 - B4 SINE B4 -2 290 2 2 1395 582 202 0 7 chr4 106196775 106196903 -49433217 + B1_Mur4 SINE Alu 3 125 -24 2 1395 421 310 88 78 chr4 106197380 106197688 -49432432 + MLT-int LTR MaLR 165 485 -1250 2 1395 809 278 23 28 chr4 106198172 106198390 -49431730 + B4 SINE B4 17 233 -59 2 1395 1273 120 5 10 chr4 106198452 106198646 -49431474 - B2_Mm1a SINE B2 0 193 1 2 1395 433 255 176 17 chr4 106198657 106198896 -49431224 + L1M2 LINE L1 4458 4734 -1409 2 1395 311 281 101 8 chr4 106199537 106199745 -49430375 - MIR SINE MIR -12 250 7 2 1395 182 119 148 173 chr4 106200026 106200107 -49430013 + L3 LINE CR1 4300 4378 -111 2 1395 252 202 19 4 chr4 106200505 106200563 -49429557 - MIRc SINE MIR -141 127 63 2 1395 256 304 26 85 chr4 106200815 106200932 -49429188 + ID4 SINE ID 2 115 -37 2 1395 204 353 87 55 chr4 106202933 106203152 -49426968 - L2b LINE L2 -27 3348 3123 2 1395 282 360 47 11 chr4 106203676 106203867 -49426253 + MLT1E2 LTR MaLR 380 577 -50 2 1395 613 300 66 4 chr4 106203982 106204226 -49425894 + MER44A DNA MER2_type 1 259 -80 2 1395 657 114 8 22 chr4 106204239 106204373 -49425747 + (CATATA)n Simple_repeat Simple_repeat 3 134 0 2 1395 872 114 0 7 chr4 106204425 106204566 -49425554 + (TTC)n Simple_repeat Simple_repeat 3 142 0 2 1395 559 299 66 27 chr4 106204571 106204811 -49425309 + RMER17C LTR ERVK 124 377 -33 2 1395 198 0 0 0 chr4 106204811 106204833 -49425287 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1395 559 299 66 27 chr4 106204833 106204850 -49425270 + RMER17C LTR ERVK 378 391 -19 2 1395 790 123 386 0 chr4 106204906 106205069 -49425051 - URR1A DNA MER1_type 0 226 1 2 1395 787 258 40 20 chr4 106205171 106205369 -49424751 - RMER5 LTR ERV1 0 534 333 2 1395 360 301 44 0 chr4 106205369 106205482 -49424638 + MER44D DNA MER2_type 1 118 -587 2 1395 857 178 98 0 chr4 106205527 106205690 -49424430 - RMER5 LTR ERV1 -24 510 332 2 1395 536 243 0 9 chr4 106205692 106205800 -49424320 + B1_Mus1 SINE Alu 36 142 -6 2 1395 472 176 143 139 chr4 106206147 106206305 -49423815 - B3 SINE B2 -6 210 12 2 1395 1305 107 89 42 chr4 106207231 106207445 -49422675 - URR1B DNA MER1_type 0 225 2 2 1395 423 219 99 23 chr4 106207924 106208055 -49422065 + MLT1A1 LTR MaLR 268 408 0 2 1395 1194 71 149 0 chr4 106208196 106208364 -49421756 + B2_Mm2 SINE B2 1 193 -2 2 1395 252 143 0 0 chr4 106208390 106208432 -49421688 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 2 1395 330 329 0 20 chr4 106208761 106208913 -49421207 + (CCA)n Simple_repeat Simple_repeat 2 150 0 2 1395 423 0 0 0 chr4 106209054 106209101 -49421019 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1395 884 152 105 247 chr4 106209341 106209770 -49420350 - RMER20B LTR ERVK -26 601 234 3 1395 213 336 14 14 chr4 106210000 106210139 -49419981 + (CCA)n Simple_repeat Simple_repeat 3 141 0 3 1395 188 318 31 16 chr4 106210457 106210521 -49419599 + MIRb SINE MIR 32 96 -172 3 1395 3330 119 118 31 chr4 106210533 106211086 -49419034 + MT2B LTR ERVL 1 601 0 3 1395 7880 74 20 5 chr4 106211833 106212841 -49417279 - RLTR13D2 LTR ERVK 0 1023 1 3 1395 258 327 137 31 chr4 106213353 106213514 -49416606 - MIRb SINE MIR -67 201 24 3 1395 832 241 80 10 chr4 106213710 106213911 -49416209 - B3 SINE B2 -1 215 1 3 1395 232 323 202 0 chr4 106214373 106214472 -49415648 - MIRb SINE MIR -146 122 4 3 1395 396 0 0 0 chr4 106214579 106214623 -49415497 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1395 264 248 47 220 chr4 106214977 106215277 -49414843 - LTR50 LTR ERVL -477 318 71 3 1395 530 284 94 168 chr4 106215285 106215678 -49414442 - MLT1A LTR MaLR -8 366 3 3 1395 261 304 39 39 chr4 106215856 106215954 -49414166 - MLT1A0 LTR MaLR 0 365 267 3 1395 2036 118 136 3 chr4 106215954 106216123 -49413997 + ORR1C2 LTR MaLR 1 176 -208 3 1395 696 24 0 0 chr4 106216123 106216205 -49413915 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1395 2036 118 136 3 chr4 106216205 106216374 -49413746 + ORR1C2 LTR MaLR 177 384 0 3 1395 261 304 39 39 chr4 106216374 106216405 -49413715 - MLT1A0 LTR MaLR -99 266 236 3 1395 354 284 12 0 chr4 106216511 106216592 -49413528 - ID4_ SINE ID 0 83 2 3 1395 276 356 21 36 chr4 106216766 106216906 -49413214 - MamGypLTR3 LTR Gypsy -29 810 673 3 1395 426 20 0 0 chr4 106217820 106217871 -49412249 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1395 248 289 72 0 chr4 106218939 106219022 -49411098 + L1MB8 LINE L1 6077 6165 -13 3 1395 878 222 62 0 chr4 106219031 106219225 -49410895 + B3 SINE B2 2 207 -9 3 1395 255 230 35 26 chr4 106219381 106219497 -49410623 + A-rich Low_complexity Low_complexity 2 118 0 3 1395 468 0 0 0 chr4 106220168 106220220 -49409900 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 3 1395 566 342 81 21 chr4 106220354 106220590 -49409530 + MIR SINE MIR 3 249 -19 3 1395 1741 196 3 10 chr4 106221346 106221655 -49408465 - MTD LTR MaLR -5 414 108 3 1395 4161 89 45 2 chr4 106221655 106222231 -49407889 + L1_Mus3 LINE L1 6023 6623 -15 3 1395 699 87 0 46 chr4 106222231 106222339 -49407781 + BC1_Mm scRNA scRNA 1 103 -49 3 1395 1240 35 0 0 chr4 106222340 106222481 -49407639 + B1_Mus2 SINE Alu 1 141 -6 3 1395 767 21 21 0 chr4 106222484 106222580 -49407540 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 3 1395 479 274 9 0 chr4 106222580 106222693 -49407427 - MTD LTR MaLR -305 114 1 3 1395 423 305 60 38 chr4 106222696 106222880 -49407240 - MIRc SINE MIR -76 192 5 3 1395 257 328 201 18 chr4 106223188 106223461 -49406659 + L3 LINE CR1 4057 4379 -110 3 1395 389 304 85 42 chr4 106223498 106223663 -49406457 - MER5A DNA MER1_type -5 184 13 3 1395 712 145 111 30 chr4 106223834 106223969 -49406151 - B1_Mus1 SINE Alu 0 148 3 3 1395 403 186 147 0 chr4 106224067 106224169 -49405951 - PB1D9 SINE Alu -2 118 2 3 1395 270 0 0 0 chr4 106224235 106224265 -49405855 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1395 653 173 40 80 chr4 106225112 106225253 -49404867 + B1_Mur1 SINE Alu 5 140 -9 3 1395 420 20 0 0 chr4 106225253 106225302 -49404818 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1395 279 0 0 0 chr4 106225315 106225346 -49404774 + (CCA)n Simple_repeat Simple_repeat 1 31 0 3 1395 219 36 0 0 chr4 106225346 106225374 -49404746 + (CAA)n Simple_repeat Simple_repeat 3 30 0 3 1395 449 238 24 154 chr4 106225398 106225567 -49404553 + B1F1 SINE Alu 2 148 -1 3 1395 594 197 16 0 chr4 106225630 106225752 -49404368 - Lx6 LINE L1 -200 7260 7137 3 1395 431 104 0 0 chr4 106225754 106225831 -49404289 + L1Md_F2 LINE L1 6502 6578 -4 3 1395 508 267 131 7 chr4 106225826 106226076 -49404044 - Lx6 LINE L1 -311 7149 6843 3 1395 599 297 98 14 chr4 106226564 106226903 -49403217 - MLT2B3 LTR ERVL 0 554 91 3 1395 531 180 0 0 chr4 106227038 106227127 -49402993 - MLT2B3 LTR ERVL -465 89 1 3 1395 406 298 28 37 chr4 106227628 106227844 -49402276 - RLTR42-int LTR ERVK -4125 1397 1184 3 1395 646 309 56 10 chr4 106228133 106228329 -49401791 + MTE2b LTR MaLR 1 205 -174 3 1395 247 171 0 0 chr4 106228325 106228360 -49401760 - B1_Mus2 SINE Alu -111 36 2 3 1395 198 0 51 51 chr4 106228386 106228425 -49401695 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1395 219 186 0 0 chr4 106228788 106228831 -49401289 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1395 389 304 28 28 chr4 106228971 106229113 -49401007 - B4A SINE B4 -65 227 86 3 1395 689 106 0 0 chr4 106229379 106229473 -49400647 + B2_Mm2 SINE B2 2 95 -100 3 1395 1278 99 38 11 chr4 106229473 106229657 -49400463 + B2_Mm2 SINE B2 4 192 -3 3 1395 200 267 0 0 chr4 106229657 106229702 -49400418 + GA-rich Low_complexity Low_complexity 1 45 0 3 1395 363 289 0 0 chr4 106229727 106229810 -49400310 + ID4_ SINE ID 1 83 0 3 1395 326 162 0 13 chr4 106229810 106229885 -49400235 + GA-rich Low_complexity Low_complexity 4 77 0 3 1395 449 111 125 0 chr4 106229994 106230066 -49400054 + B2_Mm1t SINE B2 2 82 -111 3 1395 1293 109 38 0 chr4 106230165 106230348 -49399772 + B2_Mm2 SINE B2 2 191 -4 3 1395 459 0 0 0 chr4 106230912 106230963 -49399157 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1395 279 0 0 0 chr4 106230963 106230994 -49399126 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1395 261 0 0 0 chr4 106230994 106231022 -49399098 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1395 434 195 11 11 chr4 106231579 106231667 -49398453 + B4A SINE B4 2 89 -203 3 1395 254 208 19 19 chr4 106231659 106231713 -49398407 + B4A SINE B4 48 101 -191 3 1395 434 300 30 8 chr4 106231743 106231874 -49398246 + B3A SINE B2 63 196 -2 3 1395 359 244 72 192 chr4 106231902 106232069 -49398051 + B4A SINE B4 84 230 -62 3 1395 201 269 159 44 chr4 106235158 106235271 -49394849 - MIRm SINE MIR -89 187 62 3 1395 236 330 110 0 chr4 106236517 106236608 -49393512 + MIR SINE MIR 47 147 -115 3 1395 390 171 0 84 chr4 106237166 106237249 -49392871 + ID4 SINE ID 1 76 -7 3 1395 232 128 21 21 chr4 106237757 106237805 -49392315 + U2 snRNA snRNA 4 51 -137 3 1395 483 273 45 97 chr4 106237998 106238156 -49391964 - L1ME1 LINE L1 0 6334 6029 3 1395 504 45 0 0 chr4 106238156 106238223 -49391897 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1395 483 293 99 43 chr4 106238223 106238521 -49391599 - L1ME1 LINE L1 -151 6028 5714 3 1395 395 213 233 29 chr4 106238574 106238712 -49391408 + B3A SINE B2 2 150 -45 3 1395 683 238 48 21 chr4 106238712 106238901 -49391219 + B3A SINE B2 1 194 -4 3 1395 246 261 128 101 chr4 106238901 106238941 -49391179 + B2_Mm2 SINE B2 151 185 -10 3 1395 421 316 110 31 chr4 106238944 106239261 -49390859 - L1ME1 LINE L1 -521 5658 5317 3 1395 230 218 17 68 chr4 106239343 106239402 -49390718 - RSINE1 SINE B4 -35 130 75 3 1395 232 275 154 0 chr4 106239444 106239593 -49390527 - L1ME1 LINE L1 -3215 2931 2760 3 1395 288 0 0 0 chr4 106239612 106239644 -49390476 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1395 359 319 149 33 chr4 106239909 106240086 -49390034 - L1MEc LINE L1 -3754 2565 2375 3 1395 1318 73 15 40 chr4 106240086 106240286 -49389834 - B2_Mm2 SINE B2 0 195 1 3 1395 359 319 149 33 chr4 106240286 106240322 -49389798 - L1MEc LINE L1 -3945 2374 2328 3 1395 347 314 216 0 chr4 106240455 106240738 -49389382 - L1MEc LINE L1 -4268 2132 1789 3 1395 660 108 0 0 chr4 106240738 106240831 -49389289 + B1_Mur3 SINE Alu 57 149 0 3 1395 624 241 7 62 chr4 106240893 106241039 -49389081 - B3A SINE B2 -2 196 52 3 1395 421 103 0 0 chr4 106241060 106241118 -49389002 + B1_Mus2 SINE Alu 64 121 -26 3 1395 546 16 0 0 chr4 106241166 106241229 -49388891 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 3 1395 361 296 0 0 chr4 106241276 106241364 -49388756 - L1MEc LINE L1 -4944 1456 1369 3 1395 1150 270 161 25 chr4 106241453 106241619 -49388501 - L1MEc LINE L1 -5197 1203 996 3 1395 405 0 0 0 chr4 106241627 106241672 -49388448 + (TATTG)n Simple_repeat Simple_repeat 3 47 0 3 1395 446 253 122 64 chr4 106241672 106241819 -49388301 - RSINE1 SINE B4 -8 157 2 3 1395 1150 270 161 25 chr4 106241819 106242304 -49387816 - L1MEc LINE L1 -5405 995 463 3 1395 416 316 98 56 chr4 106242397 106242753 -49387367 - L1MEc LINE L1 -5994 406 36 3 1395 906 202 119 0 chr4 106242846 106243039 -49387081 - B3 SINE B2 0 216 1 3 1395 782 321 91 4 chr4 106243126 106243389 -49386731 - B4A SINE B4 -4 288 3 3 1395 911 213 80 10 chr4 106243402 106243601 -49386519 - B3 SINE B2 -3 213 1 3 1395 204 205 0 0 chr4 106243622 106243661 -49386459 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1395 203 236 108 27 chr4 106244268 106244342 -49385778 - L3 LINE CR1 -221 4268 4189 3 1395 324 48 0 0 chr4 106244462 106244504 -49385616 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1395 1012 122 0 0 chr4 106244504 106244643 -49385477 - B1_Mur4 SINE Alu -10 140 2 3 1395 511 319 46 28 chr4 106245048 106245264 -49384856 - MIR SINE MIR -31 231 12 3 1395 186 303 15 29 chr4 106246786 106246854 -49383266 - MIR SINE MIR -118 144 78 3 1395 432 278 85 23 chr4 106247009 106247138 -49382982 - B1F SINE Alu -5 144 8 3 1395 216 0 0 0 chr4 106247150 106247174 -49382946 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1395 731 200 43 7 chr4 106247174 106247315 -49382805 - B1F2 SINE Alu -2 147 2 3 1395 231 36 0 0 chr4 106247755 106247783 -49382337 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 3 1395 265 236 102 18 chr4 106247874 106248021 -49382099 - L1M5 LINE L1 -2399 5483 5324 3 1395 561 230 122 0 chr4 106248246 106248385 -49381735 + RSINE1 SINE B4 1 156 -9 3 1395 282 286 0 0 chr4 106248415 106248478 -49381642 + ID4_ SINE ID 2 64 -19 3 1395 207 0 0 0 chr4 106249918 106249941 -49380179 + (GTTTG)n Simple_repeat Simple_repeat 5 27 0 3 1395 189 94 0 0 chr4 106250516 106250548 -49379572 + (C)n Simple_repeat Simple_repeat 1 32 0 3 1395 291 302 81 64 chr4 106251551 106251834 -49378286 - L1M4 LINE L1 -545 5638 5351 3 1395 234 0 0 0 chr4 106251869 106251895 -49378225 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1395 841 210 7 0 chr4 106251897 106252035 -49378085 - RSINE1 SINE B4 -25 140 2 3 1395 270 312 33 66 chr4 106252035 106252248 -49377872 - L1M4 LINE L1 -816 5330 5125 3 1395 390 335 133 0 chr4 106252441 106252629 -49377491 - L2 LINE L2 -405 3014 2802 4 1395 1130 58 0 7 chr4 106252637 106252776 -49377344 + B1_Mus2 SINE Alu 1 138 -9 4 1395 228 35 0 0 chr4 106252776 106252805 -49377315 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1395 215 238 0 0 chr4 106253892 106253934 -49376186 - L2 LINE L2 -1887 1532 1491 4 1395 190 346 37 66 chr4 106254360 106254496 -49375624 - L2 LINE L2 -2505 914 783 4 1395 250 290 80 0 chr4 106255117 106255217 -49374903 - LTR16A LTR ERVL -102 349 242 4 1395 263 286 29 67 chr4 106255647 106255752 -49374368 - MER45B DNA Tip100 -21 1019 919 4 1395 230 198 268 12 chr4 106255767 106255849 -49374271 - MER45B DNA Tip100 -179 861 759 4 1395 395 259 33 33 chr4 106255866 106255891 -49374229 + ID SINE ID 60 84 -140 4 1395 594 148 32 1 chr4 106255891 106255999 -49374121 + B1_Mus2 SINE Alu 2 113 -36 4 1395 2085 96 14 90 chr4 106256923 106257279 -49372841 - ORR1A4 LTR MaLR 0 329 1 4 1395 1792 134 102 23 chr4 106257613 106257957 -49372163 + Lx LINE L1 6284 6654 0 4 1395 303 227 9 76 chr4 106257974 106258079 -49372041 - RLTR25B LTR ERVK -490 538 441 4 1395 1071 8 0 0 chr4 106257993 106258118 -49372002 - B1_Mm SINE Alu -22 125 1 4 1395 287 317 28 19 chr4 106258185 106258291 -49371829 - MIRc SINE MIR -118 150 44 4 1395 180 243 0 0 chr4 106258677 106258714 -49371406 + MIR SINE MIR 110 146 -62 4 1395 452 228 77 71 chr4 106259492 106259662 -49370458 + MIRb SINE MIR 6 176 -92 4 1395 246 62 0 0 chr4 106260283 106260315 -49369805 + (C)n Simple_repeat Simple_repeat 1 32 0 4 1395 185 179 34 51 chr4 106260554 106260613 -49369507 - L3 LINE CR1 -3532 957 900 4 1395 252 208 100 38 chr4 106262419 106262499 -49367621 - MLT1A1 LTR MaLR -21 387 303 4 1395 541 264 0 15 chr4 106264469 106264600 -49365520 + B4A SINE B4 160 288 -4 4 1395 569 233 115 12 chr4 106265139 106265304 -49364816 + B3A SINE B2 1 182 -16 4 1395 404 340 98 40 chr4 106265350 106265519 -49364601 + L1MC LINE L1 5294 5478 -855 4 1395 328 215 31 0 chr4 106265519 106265584 -49364536 + ID4_ SINE ID 1 67 -16 4 1395 404 340 98 40 chr4 106265584 106265812 -49364308 + L1MC LINE L1 5479 5714 -619 4 1395 842 237 160 8 chr4 106266075 106266313 -49363807 + B4 SINE B4 1 274 -18 4 1395 687 227 69 16 chr4 106266337 106266525 -49363595 + B3A SINE B2 1 198 0 4 1395 1190 63 0 0 chr4 106266569 106266711 -49363409 - B1_Mus1 SINE Alu -5 143 2 4 1395 898 184 0 13 chr4 106266761 106266910 -49363210 + B1_Mur1 SINE Alu 1 147 -2 4 1395 1172 82 58 12 chr4 106266930 106267073 -49363047 + B2_Mm2 SINE B2 2 152 -43 4 1395 384 40 0 0 chr4 106267073 106267123 -49362997 + (CATA)n Simple_repeat Simple_repeat 1 50 0 4 1395 1172 82 58 12 chr4 106267123 106267151 -49362969 + B2_Mm2 SINE B2 153 180 -15 4 1395 194 269 29 43 chr4 106267649 106267719 -49362401 + L2b LINE L2 3288 3356 -19 4 1395 713 296 62 9 chr4 106267848 106268073 -49362047 + MTEa LTR MaLR 1 237 -142 4 1395 2441 114 25 50 chr4 106268038 106268434 -49361686 - ORR1B1 LTR MaLR -8 386 1 4 1395 724 204 20 104 chr4 106268434 106268636 -49361484 + MTEa LTR MaLR 190 374 -5 4 1395 312 216 0 13 chr4 106268800 106268875 -49361245 + L1ME2z LINE L1 6201 6274 -170 4 1395 821 254 33 0 chr4 106268882 106269063 -49361057 + B3A SINE B2 1 187 -11 4 1395 1249 54 0 0 chr4 106269269 106269417 -49360703 - B1_Mus1 SINE Alu 0 148 1 4 1395 509 296 0 0 chr4 106269418 106269533 -49360587 - RSINE1 SINE B4 -48 117 3 4 1395 433 231 99 33 chr4 106270098 106270219 -49359901 - B1_Mur1 SINE Alu -1 148 20 4 1395 631 219 72 7 chr4 106270241 106270379 -49359741 + B1_Mur1 SINE Alu 2 148 -1 4 1395 1682 206 99 0 chr4 106270379 106270723 -49359397 - RLTR14 LTR ERV1 0 382 5 4 1395 195 42 0 0 chr4 106270723 106270747 -49359373 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1395 201 74 0 0 chr4 106271434 106271461 -49358659 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1395 2655 175 20 22 chr4 106271462 106271958 -49358162 + RLTR19A LTR ERVK 1 495 -1 4 1395 198 67 0 0 chr4 106271958 106271974 -49358146 + (CG)n Simple_repeat Simple_repeat 2 17 0 4 1395 261 0 0 0 chr4 106271974 106272003 -49358117 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1395 198 67 0 0 chr4 106272003 106272016 -49358104 + (CG)n Simple_repeat Simple_repeat 2 14 0 4 1395 511 221 0 0 chr4 106272016 106272102 -49358018 - B3A SINE B2 -110 88 3 4 1395 503 283 25 51 chr4 106272121 106272318 -49357802 - B3A SINE B2 -5 193 2 4 1395 234 0 0 0 chr4 106272455 106272481 -49357639 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 4 1395 571 195 94 39 chr4 106272483 106272611 -49357509 - B1_Mur1 SINE Alu -13 136 2 4 1395 23 0 0 0 chr4 106272734 106272757 -49357363 + AT_rich Low_complexity Low_complexity 1 23 0 4 1395 1338 56 44 6 chr4 106272923 106273103 -49357017 - B2_Mm2 SINE B2 -8 187 1 4 1395 435 220 37 0 chr4 106273330 106273439 -49356681 + PB1D10 SINE Alu 5 117 0 4 1395 225 375 0 26 chr4 106273491 106273606 -49356514 + RLTR12B LTR ERVK 1 112 -416 4 1395 207 0 0 0 chr4 106273976 106273999 -49356121 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1395 577 53 0 0 chr4 106274203 106274278 -49355842 - B1_Mus2 SINE Alu -9 138 64 4 1395 315 104 0 0 chr4 106274281 106274329 -49355791 - B1_Mur4 SINE Alu -29 121 74 4 1395 263 317 59 118 chr4 106274330 106274466 -49355654 + RSINE1 SINE B4 27 154 -11 4 1395 21 36 0 0 chr4 106274500 106274528 -49355592 + AT_rich Low_complexity Low_complexity 1 28 0 4 1395 888 169 0 0 chr4 106274587 106274723 -49355397 + B1_Mur4 SINE Alu 2 137 -13 4 1395 318 50 0 0 chr4 106274723 106274763 -49355357 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1395 1779 189 39 8 chr4 106274856 106275219 -49354901 + ORR1D1 LTR MaLR 1 374 0 4 1395 394 287 195 71 chr4 106275454 106275695 -49354425 + HAL1 LINE L1 65 336 -2171 4 1395 1427 58 31 11 chr4 106275695 106275886 -49354234 + B2_Mm2 SINE B2 1 195 0 4 1395 394 287 195 71 chr4 106275886 106275952 -49354168 + HAL1 LINE L1 337 410 -2097 4 1395 760 233 19 98 chr4 106275995 106276209 -49353911 - MTEa LTR MaLR -5 374 178 4 1395 539 284 14 41 chr4 106276326 106276473 -49353647 - ID_B1 SINE B4 -14 210 68 4 1395 618 195 274 0 chr4 106276481 106276645 -49353475 - B3 SINE B2 -5 211 3 4 1395 3096 44 0 0 chr4 106276676 106277043 -49353077 + L1Md_F3 LINE L1 6201 6567 -17 4 1395 207 0 0 0 chr4 106277049 106277072 -49353048 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1395 469 316 128 16 chr4 106277327 106277578 -49352542 + HAL1 LINE L1 832 1110 -1397 4 1395 229 250 120 40 chr4 106277783 106277883 -49352237 - MIRb SINE MIR -37 225 118 4 1395 213 39 0 0 chr4 106277989 106278015 -49352105 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 4 1395 1248 84 7 3 chr4 106278164 106278354 -49351766 + B2_Mm2 SINE B2 1 197 -19 4 1395 225 0 0 0 chr4 106278477 106278502 -49351618 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1395 267 311 31 54 chr4 106278575 106278704 -49351416 + MIRc SINE MIR 28 153 -115 4 1395 360 203 0 0 chr4 106278775 106278844 -49351276 + B3A SINE B2 3 71 -127 4 1395 539 235 98 0 chr4 106278914 106279046 -49351074 + B3 SINE B2 66 210 -6 4 1395 24 0 0 0 chr4 106279048 106279072 -49351048 + AT_rich Low_complexity Low_complexity 1 24 0 4 1395 765 143 66 29 chr4 106279072 106279209 -49350911 + B1_Mus1 SINE Alu 1 142 -6 4 1395 741 326 122 27 chr4 106280139 106280542 -49349578 + MLT1C LTR MaLR 1 441 -26 4 1395 848 254 128 101 chr4 106280769 106281137 -49348983 + MTE2a LTR MaLR 1 378 -1 4 1395 314 329 0 0 chr4 106281399 106281481 -49348639 - L1MEg LINE L1 -4121 1963 1882 4 1395 1230 68 0 0 chr4 106281484 106281631 -49348489 - B1_Mus2 SINE Alu 0 147 1 4 1395 620 139 9 44 chr4 106281901 106282014 -49348106 + B1_Mus1 SINE Alu 39 147 -1 4 1395 1487 58 15 31 chr4 106282244 106282440 -49347680 + B2_Mm2 SINE B2 3 195 0 4 1395 896 266 28 131 chr4 106282509 106282868 -49347252 + MTE2a LTR MaLR 1 322 -57 4 1395 345 296 0 61 chr4 106284412 106284527 -49345593 + RSINE1 SINE B4 54 161 -4 4 1395 292 237 141 25 chr4 106284531 106284652 -49345468 + L1MC1 LINE L1 6186 6320 -13 4 1395 1356 102 38 0 chr4 106284654 106284840 -49345280 + B2_Mm2 SINE B2 2 194 -1 4 1395 380 301 181 11 chr4 106286603 106286791 -49343329 + MIRb SINE MIR 22 241 -27 4 1395 876 191 13 13 chr4 106288992 106289131 -49340989 + B1_Mur3 SINE Alu 1 141 -8 4 1395 573 15 0 0 chr4 106289131 106289197 -49340923 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1395 474 88 0 0 chr4 106289206 106289274 -49340846 + (GAAAA)n Simple_repeat Simple_repeat 5 72 0 4 1395 356 187 13 39 chr4 106289422 106289491 -49340629 + PB1D9 SINE Alu 23 92 -28 4 1395 541 40 13 13 chr4 106289491 106289568 -49340552 + (GGA)n Simple_repeat Simple_repeat 3 79 0 4 1395 227 218 36 0 chr4 106290221 106290276 -49339844 + (CGGGG)n Simple_repeat Simple_repeat 1 57 0 4 1395 922 125 88 28 chr4 106290959 106291140 -49338980 - B2_Mm1t SINE B2 0 193 2 4 1395 186 311 54 0 chr4 106291148 106291222 -49338898 + MIRb SINE MIR 115 192 -76 4 1395 283 260 78 0 chr4 106291279 106291356 -49338764 + L2c LINE L2 3305 3387 0 4 1395 288 0 0 0 chr4 106292089 106292121 -49337999 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1395 1195 62 0 0 chr4 106292121 106292266 -49337854 - B1_Mus1 SINE Alu -3 145 1 4 1395 1065 280 50 40 chr4 106292475 106292851 -49337269 + L1MB3 LINE L1 5453 5832 -351 4 1395 463 195 86 11 chr4 106292856 106292989 -49337131 + B1F SINE Alu 8 149 0 4 1395 431 256 89 58 chr4 106293002 106293193 -49336927 + L1MB3 LINE L1 5812 6008 -175 4 1395 1168 61 0 39 chr4 106293240 106293393 -49336727 + B1_Mus2 SINE Alu 1 147 0 4 1395 414 0 0 0 chr4 106293406 106293452 -49336668 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1395 803 155 216 11 chr4 106293458 106293634 -49336486 + B3 SINE B2 1 212 -4 5 1395 1370 85 11 0 chr4 106293746 106293922 -49336198 + B2_Mm1t SINE B2 2 179 -14 5 1395 333 100 52 3 chr4 106293983 106294079 -49336041 + B2_Mm2 SINE B2 47 181 -14 5 1395 267 282 28 14 chr4 106299262 106299334 -49330786 - ID4_ SINE ID -5 78 6 5 1396 531 43 0 0 chr4 106299414 106299484 -49330636 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1396 197 197 16 0 chr4 106299497 106299558 -49330562 + GA-rich Low_complexity Low_complexity 1 62 0 5 1396 590 143 157 26 chr4 106299622 106299737 -49330383 + B1_Mm SINE Alu 2 131 -16 5 1396 400 271 68 9 chr4 106300526 106300715 -49329405 - MIRb SINE MIR -31 237 30 5 1396 257 305 122 32 chr4 106301519 106301675 -49328445 + MIRb SINE MIR 18 187 -81 5 1396 422 168 171 38 chr4 106302212 106302317 -49327803 + PB1D7 SINE Alu 1 119 -1 5 1396 1211 127 0 25 chr4 106302331 106302533 -49327587 - MTB_Mm LTR MaLR 0 407 211 5 1396 281 228 149 21 chr4 106302555 106302649 -49327471 + PB1D10 SINE Alu 1 106 -11 5 1396 223 186 66 79 chr4 106304064 106304140 -49325980 + B1F SINE Alu 75 149 0 5 1396 208 375 23 15 chr4 106304732 106304862 -49325258 + L2c LINE L2 3023 3153 -234 5 1396 645 142 0 0 chr4 106305163 106305276 -49324844 + (GA)n Simple_repeat Simple_repeat 2 114 0 5 1396 951 132 0 7 chr4 106305475 106305612 -49324508 + B1_Mus1 SINE Alu 1 136 -12 5 1396 210 37 0 0 chr4 106305613 106305640 -49324480 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1396 467 242 193 0 chr4 106305761 106305946 -49324174 + MIR SINE MIR 1 222 -46 5 1396 255 263 26 13 chr4 106307777 106307854 -49322266 + PB1D10 SINE Alu 38 115 -2 5 1396 726 179 0 0 chr4 106307991 106308249 -49321871 + (CA)n Simple_repeat Simple_repeat 1 258 0 5 1396 196 195 24 0 chr4 106310646 106310687 -49319433 + L2c LINE L2 3315 3356 -31 5 1396 207 247 152 25 chr4 106311441 106311520 -49318600 - MIR SINE MIR -100 108 20 5 1396 246 246 66 0 chr4 106312189 106312250 -49317870 + ID2 SINE ID 5 69 -14 5 1396 972 62 45 13 chr4 106312966 106313140 -49316980 - URR1B DNA MER1_type 0 225 31 5 1396 3105 36 0 29 chr4 106313526 106313902 -49316218 - RLTR10B2 LTR ERVK 0 365 1 5 1396 2167 132 28 0 chr4 106313998 106314315 -49315805 - ORR1A3 LTR MaLR 0 326 1 5 1396 191 234 188 0 chr4 106314938 106315002 -49315118 - MIR3 SINE MIR -46 162 87 5 1396 237 270 0 0 chr4 106315601 106315664 -49314456 - L3 LINE CR1 -16 4473 4411 5 1396 319 194 135 31 chr4 106315776 106315872 -49314248 + B1F SINE Alu 43 148 -1 5 1396 435 245 67 55 chr4 106316842 106317006 -49313114 + ORR1E LTR MaLR 32 197 -162 5 1396 272 267 0 0 chr4 106317183 106317243 -49312877 + ORR1E LTR MaLR 320 379 0 5 1396 368 250 57 0 chr4 106317243 106317342 -49312778 + MLT1A1 LTR MaLR 218 374 -34 5 1396 648 246 41 46 chr4 106317342 106317538 -49312582 + B3A SINE B2 1 195 -3 5 1396 706 229 14 174 chr4 106317549 106317761 -49312359 + B3A SINE B2 8 192 -6 5 1396 558 254 144 9 chr4 106317808 106318077 -49312043 + MLT2B4 LTR ERVL 27 345 -69 5 1396 252 186 0 0 chr4 106318101 106318160 -49311960 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1396 357 24 0 0 chr4 106318273 106318315 -49311805 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1396 225 263 0 0 chr4 106318443 106318500 -49311620 - L2a LINE L2 -1 3425 3369 5 1396 686 324 9 44 chr4 106318506 106318735 -49311385 + MER58A DNA MER1_type 4 224 0 5 1396 402 315 78 23 chr4 106321846 106322103 -49308017 + L2a LINE L2 3019 3289 -137 5 1396 22 0 0 0 chr4 106322103 106322125 -49307995 + AT_rich Low_complexity Low_complexity 1 22 0 5 1396 201 74 0 0 chr4 106322186 106322213 -49307907 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1396 1666 215 54 26 chr4 106322214 106322605 -49307515 + MTD LTR MaLR 18 419 0 5 1396 238 246 29 0 chr4 106322748 106322817 -49307303 + B4A SINE B4 2 72 -220 5 1396 269 283 133 0 chr4 106322876 106322989 -49307131 - RMER12 LTR ERVK -464 858 731 5 1396 409 227 131 20 chr4 106322980 106323133 -49306987 - B3A SINE B2 -7 191 22 5 1396 182 296 98 12 chr4 106324491 106324573 -49305547 - L2 LINE L2 -666 2753 2665 5 1396 303 269 200 8 chr4 106324859 106324979 -49305141 - B1F2 SINE Alu -5 144 2 5 1396 731 203 13 53 chr4 106325451 106325602 -49304518 - B1_Mm SINE Alu 0 147 3 5 1396 279 0 0 0 chr4 106327890 106327921 -49302199 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1396 398 261 25 57 chr4 106328249 106328371 -49301749 - MTEa LTR MaLR -261 118 1 5 1396 291 308 80 124 chr4 106328485 106328711 -49301409 + MTEb LTR MaLR 156 371 -8 5 1396 729 221 142 10 chr4 106329203 106329400 -49300720 + ID_B1 SINE B4 1 223 -1 5 1396 227 306 69 0 chr4 106329421 106329493 -49300627 - ID4_ SINE ID -1 82 6 5 1396 223 253 70 35 chr4 106330684 106330770 -49299350 + MIRb SINE MIR 63 151 -117 5 1396 423 332 101 34 chr4 106331026 106331353 -49298767 + L1MA5 LINE L1 5946 6294 -6 5 1396 1035 291 108 8 chr4 106331394 106331792 -49298328 + MLT1E2 LTR MaLR 136 573 -54 5 1396 627 171 0 8 chr4 106334237 106334355 -49295765 + ORR1D1 LTR MaLR 1 117 -257 5 1396 1630 75 50 0 chr4 106334355 106334595 -49295525 - ORR1A2 LTR MaLR 0 327 76 5 1396 396 0 0 0 chr4 106334699 106334743 -49295377 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1396 189 0 0 0 chr4 106336213 106336234 -49293886 + (CAAAC)n Simple_repeat Simple_repeat 3 23 0 5 1396 346 314 160 28 chr4 106336374 106336518 -49293602 + RSINE1 SINE B4 3 165 0 5 1396 649 269 7 7 chr4 106336567 106336713 -49293407 + B1_Mur2 SINE Alu 1 146 -3 5 1396 429 304 44 0 chr4 106336720 106336855 -49293265 + B1F2 SINE Alu 1 141 -8 5 1396 181 344 31 0 chr4 106336969 106337033 -49293087 - L2c LINE L2 -208 3179 3114 5 1396 214 254 143 0 chr4 106337883 106337946 -49292174 - MIRc SINE MIR -116 152 81 5 1396 226 304 48 19 chr4 106338941 106338956 -49291164 - RSINE1 SINE B4 -45 120 15 5 1396 359 273 0 0 chr4 106338956 106339044 -49291076 - BC1_Mm scRNA scRNA -51 101 14 5 1396 377 211 208 16 chr4 106339052 106339177 -49290943 - B1F SINE Alu 0 149 1 5 1396 243 309 124 0 chr4 106339364 106339461 -49290659 + PB1D10 SINE Alu 1 109 -8 5 1396 401 279 110 23 chr4 106339608 106339872 -49290248 + L1MC4 LINE L1 6790 7076 -966 5 1396 491 206 84 0 chr4 106339877 106339984 -49290136 + RSINE1 SINE B4 4 119 -46 5 1396 285 98 0 0 chr4 106339985 106340026 -49290094 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1396 326 273 81 0 chr4 106341055 106341154 -49288966 - PB1D9 SINE Alu -2 118 12 5 1396 393 230 23 0 chr4 106341076 106341163 -49288957 - ID_B1 SINE B4 -54 170 82 5 1396 2706 119 65 5 chr4 106341333 106341730 -49288390 + MTC LTR MaLR 1 421 0 5 1396 477 133 13 0 chr4 106341829 106341904 -49288216 + B3 SINE B2 1 76 -140 5 1396 298 292 35 26 chr4 106342081 106342197 -49287923 - PB1D10 SINE Alu 0 117 1 5 1396 315 0 0 0 chr4 106342206 106342241 -49287879 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1396 569 122 71 0 chr4 106342282 106342380 -49287740 - B3 SINE B2 -110 106 2 5 1396 201 289 0 100 chr4 106343966 106344066 -49286054 + L2c LINE L2 3061 3150 -237 5 1396 293 259 132 18 chr4 106344596 106344710 -49285410 + MIRb SINE MIR 43 169 -99 5 1396 306 0 0 0 chr4 106344717 106344751 -49285369 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1396 1317 92 49 0 chr4 106344769 106344953 -49285167 + B2_Mm2 SINE B2 2 194 -1 5 1396 315 191 0 0 chr4 106344980 106345048 -49285072 + GA-rich Low_complexity Low_complexity 2 69 0 5 1396 463 226 120 63 chr4 106345052 106345194 -49284926 - B3A SINE B2 -48 150 1 5 1396 239 233 21 33 chr4 106345330 106345403 -49284717 - ID4 SINE ID 0 83 10 5 1396 2343 86 9 58 chr4 106345509 106345853 -49284267 + ORR1A2 LTR MaLR 1 327 0 5 1396 643 310 0 0 chr4 106345886 106346044 -49284076 + RSINE1 SINE B4 8 165 0 5 1396 1171 75 0 0 chr4 106346618 106346765 -49283355 - B1_Mus2 SINE Alu 0 147 1 5 1396 5014 129 132 1 chr4 106347355 106348202 -49281918 + RMER17B LTR ERVK 1 958 0 5 1396 309 272 97 11 chr4 106348352 106348445 -49281675 - PB1 SINE Alu -5 122 22 5 1396 868 261 108 12 chr4 106348901 106349142 -49280978 + B4 SINE B4 28 291 -1 5 1396 1189 204 110 4 chr4 106349445 106349798 -49280322 + MTD LTR MaLR 1 412 -7 5 1396 495 81 21 75 chr4 106349967 106349983 -49280137 - B1_Mur3 SINE Alu 0 149 140 5 1396 243 61 0 0 chr4 106349983 106350016 -49280104 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1396 495 83 22 76 chr4 106350016 106350093 -49280027 - B1_Mur3 SINE Alu -10 139 33 5 1396 453 36 0 0 chr4 106350093 106350148 -49279972 + (CCTG)n Simple_repeat Simple_repeat 1 55 0 5 1396 271 212 55 110 chr4 106350148 106350180 -49279940 - PB1D9 SINE Alu -88 32 2 5 1396 424 361 31 6 chr4 106350213 106350372 -49279748 + RSINE1 SINE B4 3 165 0 5 1396 239 226 208 0 chr4 106350384 106350437 -49279683 + ID4_ SINE ID 7 70 -13 5 1396 460 257 35 9 chr4 106351808 106351922 -49278198 + PB1D10 SINE Alu 1 117 0 5 1396 358 403 51 8 chr4 106352031 106352266 -49277854 - L1M5 LINE L1 -437 5757 5513 6 1396 325 336 13 91 chr4 106352596 106352750 -49277370 - MER20 DNA MER1_type -29 190 49 6 1396 275 247 0 0 chr4 106352935 106353006 -49277114 + MIRm SINE MIR 85 155 -113 6 1396 195 323 0 15 chr4 106353601 106353667 -49276453 + L2c LINE L2 3108 3172 -215 6 1396 324 251 0 68 chr4 106353954 106354217 -49275903 + C-rich Low_complexity Low_complexity 1 245 0 6 1396 347 266 11 43 chr4 106354261 106354446 -49275674 + C-rich Low_complexity Low_complexity 2 180 0 6 1396 215 366 52 22 chr4 106354984 106355118 -49275002 + L2c LINE L2 3051 3188 -199 6 1396 323 286 13 0 chr4 106355310 106355387 -49274733 - ID4_ SINE ID -5 78 1 6 1396 241 357 33 59 chr4 106355420 106355572 -49274548 + Charlie4z DNA MER1_type 7 154 -13 6 1396 624 195 13 7 chr4 106355914 106356069 -49274051 + (TAGA)n Simple_repeat Simple_repeat 1 156 0 6 1396 378 107 0 0 chr4 106356135 106356191 -49273929 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 6 1396 1200 29 0 0 chr4 106356812 106356949 -49273171 - B1_Mus2 SINE Alu -10 137 1 6 1396 261 286 215 15 chr4 106357510 106357645 -49272475 + L2c LINE L2 3061 3222 -165 6 1396 1362 141 56 0 chr4 106359417 106359630 -49270490 + URR1B DNA MER1_type 1 225 0 6 1396 264 163 0 0 chr4 106359723 106359766 -49270354 - ID_B1 SINE B4 -1 223 181 6 1396 468 230 1 25 chr4 106360022 106360132 -49269988 - PB1D7 SINE Alu -21 129 24 6 1396 737 284 62 118 chr4 106360301 106360589 -49269531 - B4 SINE B4 -9 283 12 6 1396 180 0 0 0 chr4 106360645 106360665 -49269455 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1396 395 271 8 41 chr4 106361081 106361204 -49268916 + PB1 SINE Alu 9 127 0 6 1396 197 213 0 32 chr4 106361318 106361381 -49268739 + C-rich Low_complexity Low_complexity 3 63 0 6 1396 778 209 7 0 chr4 106361789 106361928 -49268192 + B1F2 SINE Alu 1 140 -9 6 1396 1016 153 0 20 chr4 106361938 106362091 -49268029 + B1_Mur4 SINE Alu 1 150 0 6 1396 409 221 0 0 chr4 106362147 106362215 -49267905 + ID4_ SINE ID 2 69 -14 6 1396 633 27 0 0 chr4 106362218 106362293 -49267827 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1396 1266 79 43 0 chr4 106362330 106362639 -49267481 + (TAGA)n Simple_repeat Simple_repeat 1 322 0 6 1396 447 257 9 37 chr4 106363029 106363138 -49266982 + RSINE1 SINE B4 2 107 -58 6 1396 414 0 0 0 chr4 106363164 106363210 -49266910 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1396 620 26 13 0 chr4 106363317 106363395 -49266725 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 1396 348 24 0 0 chr4 106365093 106365134 -49264986 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1396 310 318 0 0 chr4 106365957 106366047 -49264073 - ID4 SINE ID -59 93 4 6 1396 241 176 0 73 chr4 106366069 106366124 -49263996 - B1F SINE Alu -7 142 92 6 1396 267 280 163 69 chr4 106366143 106366370 -49263750 + MIR SINE MIR 40 262 0 6 1396 752 244 19 12 chr4 106367168 106367330 -49262790 - RSINE1 SINE B4 0 165 3 6 1396 279 264 55 0 chr4 106369075 106369166 -49260954 + PB1D9 SINE Alu 24 119 -1 6 1396 240 294 187 13 chr4 106369317 106369472 -49260648 - MLT1D LTR MaLR -315 190 9 6 1396 434 18 18 0 chr4 106370099 106370154 -49259966 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 6 1396 32 26 0 0 chr4 106370393 106370432 -49259688 + AT_rich Low_complexity Low_complexity 1 39 0 6 1396 797 175 0 18 chr4 106370559 106370784 -49259336 + (CA)n Simple_repeat Simple_repeat 1 220 0 6 1396 242 250 226 11 chr4 106370799 106370892 -49259228 + PB1D10 SINE Alu 4 116 -1 6 1396 321 117 0 0 chr4 106371064 106371124 -49258996 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1396 330 26 0 0 chr4 106371124 106371163 -49258957 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1396 312 120 0 0 chr4 106371163 106371212 -49258908 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1396 407 266 97 45 chr4 106371212 106371346 -49258774 - RSINE1 SINE B4 -24 141 1 6 1396 667 276 139 11 chr4 106372019 106372206 -49257914 + ID_B1 SINE B4 1 211 -13 6 1396 219 350 57 8 chr4 106373187 106373311 -49256809 - MIRb SINE MIR -103 165 36 6 1396 1035 272 36 52 chr4 106373474 106373804 -49256316 - LTR87 LTR ERVL? -1 623 299 6 1396 297 219 80 27 chr4 106374000 106374075 -49256045 + ID4 SINE ID 5 83 0 6 1396 237 211 0 0 chr4 106374078 106374135 -49255985 + GA-rich Low_complexity Low_complexity 2 58 0 6 1396 432 202 0 5 chr4 106374138 106374223 -49255897 + B1F SINE Alu 19 99 -50 6 1396 1049 105 6 0 chr4 106374277 106374439 -49255681 + (GA)n Simple_repeat Simple_repeat 1 163 0 6 1396 274 322 60 9 chr4 106374795 106374911 -49255209 + MIRb SINE MIR 35 156 -112 6 1396 234 150 0 0 chr4 106376047 106376087 -49254033 + (GGA)n Simple_repeat Simple_repeat 3 42 0 6 1396 969 172 0 0 chr4 106376096 106376276 -49253844 + GA-rich Low_complexity Low_complexity 1 180 0 6 1396 1143 135 123 52 chr4 106376357 106376428 -49253692 - URR1A DNA MER1_type 0 226 162 6 1396 423 0 0 0 chr4 106376428 106376475 -49253645 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1396 1143 135 123 52 chr4 106376475 106376614 -49253506 - URR1A DNA MER1_type -65 161 1 6 1396 305 311 115 0 chr4 106376932 106377054 -49253066 - L1ME3A LINE L1 -77 6096 5961 6 1396 560 299 15 49 chr4 106377474 106377503 -49252617 - ID_B1 SINE B4 -46 246 184 6 1396 667 237 0 14 chr4 106377503 106377644 -49252476 - B1_Mur1 SINE Alu -5 144 6 6 1396 560 299 15 49 chr4 106377644 106377720 -49252400 - ID_B1 SINE B4 -46 183 10 6 1396 490 218 10 0 chr4 106377793 106377894 -49252226 - ID_B1 SINE B4 -3 221 120 6 1396 211 196 0 73 chr4 106377961 106378016 -49252104 - B1F1 SINE Alu -97 52 2 6 1396 404 301 34 34 chr4 106378059 106378238 -49251882 + L2a LINE L2 3243 3421 -5 6 1396 997 126 50 0 chr4 106378695 106378854 -49251266 + B2_Mm2 SINE B2 1 167 -28 6 1396 676 72 208 67 chr4 106378857 106378977 -49251143 + B1_Mus1 SINE Alu 3 139 -9 6 1396 207 308 136 8 chr4 106379566 106379684 -49250436 - L2b LINE L2 -17 3358 3226 6 1396 274 313 0 0 chr4 106379806 106379873 -49250247 + PB1D10 SINE Alu 11 77 -40 6 1396 239 279 12 25 chr4 106380737 106380818 -49249302 + PB1D10 SINE Alu 36 115 -2 6 1396 332 270 0 6 chr4 106380841 106380937 -49249183 + ID2 SINE ID 12 105 -47 6 1396 201 325 61 68 chr4 106381789 106381921 -49248199 - L3b LINE CR1 -302 180 50 6 1396 423 0 0 0 chr4 106383104 106383151 -49246969 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1396 624 312 141 8 chr4 106383154 106383403 -49246717 - B4 SINE B4 -10 282 1 6 1396 197 354 18 104 chr4 106383649 106383813 -49246307 - MIRb SINE MIR -117 151 2 6 1396 746 88 26 0 chr4 106384116 106384229 -49245891 + B1_Mur2 SINE Alu 17 132 -17 6 1396 894 280 22 101 chr4 106384217 106384535 -49245585 - MTE2b LTR MaLR -86 293 1 6 1396 307 272 373 12 chr4 106385015 106385215 -49244905 + MLT1H2 LTR MaLR 163 452 -103 6 1396 618 175 209 18 chr4 106385335 106385498 -49244622 + B2_Mm2 SINE B2 2 195 0 6 1396 242 273 125 0 chr4 106385894 106385982 -49244138 - L2a LINE L2 -2 3424 3326 6 1396 727 298 62 56 chr4 106386014 106386334 -49243786 + ORR1E LTR MaLR 6 327 -32 6 1396 630 291 0 0 chr4 106386482 106386623 -49243497 + B1F2 SINE Alu 3 143 -6 6 1396 189 0 0 0 chr4 106386645 106386666 -49243454 + (GGGGA)n Simple_repeat Simple_repeat 3 23 0 6 1396 221 356 130 41 chr4 106386826 106387119 -49243001 + L2 LINE L2 2749 3067 -352 6 1396 391 363 64 15 chr4 106387396 106387600 -49242520 + MLT1K LTR MaLR 147 360 -235 6 1396 406 296 115 27 chr4 106387617 106387877 -49242243 + L1MC4 LINE L1 6755 7037 -1005 6 1396 239 200 174 12 chr4 106387912 106387998 -49242122 + L1MC4 LINE L1 7222 7321 -561 6 1396 536 330 115 30 chr4 106388493 106388762 -49241358 + B4A SINE B4 1 292 0 6 1396 330 269 21 0 chr4 106388910 106389003 -49241117 + (CA)n Simple_repeat Simple_repeat 1 95 0 6 1396 540 235 0 0 chr4 106389064 106389166 -49240954 + PB1D10 SINE Alu 1 102 -15 6 1396 240 35 0 0 chr4 106389190 106389219 -49240901 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 6 1396 592 282 7 7 chr4 106389294 106389437 -49240683 + B1F SINE Alu 1 143 -6 6 1396 386 218 0 11 chr4 106389479 106389567 -49240553 + L1MB7 LINE L1 5317 5403 -780 6 1396 1156 164 74 17 chr4 106389612 106389913 -49240207 + MTB_Mm LTR MaLR 12 375 -44 6 1396 489 233 111 8 chr4 106390449 106390566 -49239554 + RSINE1 SINE B4 13 141 -24 6 1396 282 29 0 0 chr4 106390567 106390602 -49239518 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1396 548 303 123 0 chr4 106390650 106390845 -49239275 + ID_B1 SINE B4 6 224 0 6 1396 723 85 57 0 chr4 106390852 106390993 -49239127 + (GAGAA)n Simple_repeat Simple_repeat 3 151 0 6 1396 1266 90 0 0 chr4 106390997 106391175 -49238945 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 6 1396 454 315 113 94 chr4 106391232 106391646 -49238474 + LTR73 LTR ERV1 28 449 -123 6 1396 261 258 0 0 chr4 106391686 106391748 -49238372 + PB1D10 SINE Alu 34 95 -22 6 1396 515 311 38 19 chr4 106391803 106391832 -49238288 + L1MB7 LINE L1 5723 5748 -436 6 1396 234 91 0 0 chr4 106391832 106391865 -49238255 + (CAT)n Simple_repeat Simple_repeat 3 35 0 6 1396 515 311 38 19 chr4 106391865 106392045 -49238075 + L1MB7 LINE L1 5749 5936 -248 6 1396 391 224 26 0 chr4 106392045 106392121 -49237999 + ID4 SINE ID 3 80 -3 6 1396 547 291 7 7 chr4 106392222 106392357 -49237763 + ID_B1 SINE B4 84 218 -6 6 1396 688 198 8 22 chr4 106392632 106392766 -49237354 + B1_Mur1 SINE Alu 11 142 -7 6 1396 196 338 44 0 chr4 106392773 106392841 -49237279 - MIRc SINE MIR -117 151 81 6 1396 564 170 47 0 chr4 106394477 106394583 -49235537 + PB1D10 SINE Alu 1 111 -6 7 1396 291 259 22 11 chr4 106394593 106394683 -49235437 + GA-rich Low_complexity Low_complexity 5 95 0 7 1396 230 398 8 25 chr4 106395496 106395617 -49234503 + L2b LINE L2 3235 3353 -22 7 1396 250 246 0 15 chr4 106396130 106396196 -49233924 + Arthur1A DNA Tip100 60 124 -53 7 1396 764 182 7 7 chr4 106396540 106396689 -49233431 + B1F2 SINE Alu 1 149 0 7 1396 270 0 0 0 chr4 106396689 106396719 -49233401 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1396 867 232 24 15 chr4 106396729 106396935 -49233185 + B3 SINE B2 1 208 -8 7 1396 346 280 39 20 chr4 106396974 106397076 -49233044 + PB1D10 SINE Alu 12 115 -2 7 1396 329 293 0 0 chr4 106397091 106397173 -49232947 - L1MA10 LINE L1 -53 6281 6200 7 1396 288 0 0 0 chr4 106397212 106397244 -49232876 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1396 451 290 28 0 chr4 106397254 106397399 -49232721 + B1F SINE Alu 1 149 0 7 1396 397 254 44 35 chr4 106397424 106397538 -49232582 + PB1D10 SINE Alu 1 115 -2 7 1396 524 250 88 0 chr4 106397538 106397674 -49232446 + B1F SINE Alu 1 148 -1 7 1396 1059 103 14 0 chr4 106397796 106397941 -49232179 + B1_Mus1 SINE Alu 2 148 0 7 1396 602 89 11 0 chr4 106397965 106398055 -49232065 + (GA)n Simple_repeat Simple_repeat 1 91 0 7 1396 303 264 110 7 chr4 106398070 106398215 -49231905 + L1MDa LINE L1 1248 1407 -5133 7 1396 608 38 0 12 chr4 106398344 106398424 -49231696 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 7 1396 753 243 9 49 chr4 106398436 106398627 -49231493 + B3 SINE B2 1 187 -29 7 1396 423 0 0 0 chr4 106398627 106398674 -49231446 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1396 276 30 0 0 chr4 106398677 106398710 -49231410 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 7 1396 654 201 60 0 chr4 106398710 106398844 -49231276 + B1_Mur1 SINE Alu 2 143 -6 7 1396 753 243 9 49 chr4 106398844 106398872 -49231248 + B3 SINE B2 188 213 -3 7 1396 323 292 135 12 chr4 106398942 106399112 -49231008 + L1MDa LINE L1 1512 1702 -4931 7 1396 410 310 28 0 chr4 106399173 106399184 -49230936 - B1F SINE Alu -1 148 138 7 1396 290 45 23 0 chr4 106399184 106399228 -49230892 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 7 1396 410 310 28 0 chr4 106399228 106399358 -49230762 - B1F SINE Alu -12 137 4 7 1396 219 308 15 0 chr4 106399831 106399896 -49230224 + L2a LINE L2 3336 3401 -25 7 1396 204 40 0 0 chr4 106399914 106399939 -49230181 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 7 1396 194 258 32 0 chr4 106400915 106400977 -49229143 - L3 LINE CR1 -908 3581 3518 7 1396 201 154 0 0 chr4 106401053 106401092 -49229028 + T-rich Low_complexity Low_complexity 1 39 0 7 1396 1020 102 0 7 chr4 106401092 106401240 -49228880 - B1_Mus1 SINE Alu 0 148 2 7 1396 364 307 97 26 chr4 106401531 106401685 -49228435 - RSINE1 SINE B4 0 165 1 7 1396 792 234 43 47 chr4 106401905 106402116 -49228004 + B3 SINE B2 1 210 -6 7 1396 403 261 30 2 chr4 106402126 106402227 -49227893 + B1F2 SINE Alu 17 116 -1 7 1396 300 266 82 31 chr4 106402221 106402318 -49227802 + PB1 SINE Alu 16 117 -10 7 1396 273 312 0 0 chr4 106402366 106402446 -49227674 + ID4_ SINE ID 1 80 -3 7 1396 484 131 95 0 chr4 106402796 106402880 -49227240 + B2_Mm2 SINE B2 1 92 -103 7 1396 23 0 0 0 chr4 106402903 106402926 -49227194 + AT_rich Low_complexity Low_complexity 1 23 0 7 1396 542 210 18 0 chr4 106402945 106403063 -49227057 + B1_Mur2 SINE Alu 3 128 -21 7 1396 292 183 0 0 chr4 106403089 106403149 -49226971 - B1F2 SINE Alu -89 60 1 7 1396 309 132 19 0 chr4 106403153 106403206 -49226914 - PB1D9 SINE Alu -66 54 1 7 1396 287 364 14 7 chr4 106403601 106403742 -49226378 - ID_B1 SINE B4 -2 222 81 7 1396 271 304 0 0 chr4 106403763 106403842 -49226278 - ID4 SINE ID 0 83 5 7 1396 484 131 95 0 chr4 106404038 106404122 -49225998 - B2_Mm2 SINE B2 -103 92 1 7 1396 326 139 154 0 chr4 106404412 106404502 -49225618 - PB1D10 SINE Alu 0 120 17 7 1396 755 307 31 21 chr4 106404582 106404871 -49225249 + B4A SINE B4 1 292 0 7 1396 222 155 16 49 chr4 106404871 106404932 -49225188 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 7 1396 417 70 0 0 chr4 106405011 106405068 -49225052 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1396 405 211 11 11 chr4 106405103 106405194 -49224926 - ID_B1 SINE B4 -1 223 133 7 1396 295 254 62 92 chr4 106405109 106405227 -49224893 - B1F SINE Alu -7 142 29 7 1396 593 259 15 0 chr4 106405227 106405358 -49224762 + B1F SINE Alu 1 133 -16 7 1396 790 243 6 17 chr4 106405355 106405531 -49224589 + B3 SINE B2 5 178 -38 7 1396 726 141 15 30 chr4 106405544 106405676 -49224444 + B1_Mur4 SINE Alu 2 131 -19 7 1396 193 348 0 53 chr4 106406143 106406237 -49223883 - MIR3 SINE MIR -33 175 87 7 1396 321 26 0 0 chr4 106407519 106407557 -49222563 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1396 207 0 0 0 chr4 106407557 106407579 -49222541 + (GA)n Simple_repeat Simple_repeat 1 23 0 7 1396 469 217 33 0 chr4 106407579 106407671 -49222449 - RSINE1 SINE B4 -50 115 21 7 1396 354 266 92 0 chr4 106407679 106407788 -49222332 - ID_B1 SINE B4 -8 216 98 7 1396 296 213 133 41 chr4 106407812 106407910 -49222210 - B1F SINE Alu -42 107 1 7 1396 218 312 131 30 chr4 106408541 106408640 -49221480 - MIRb SINE MIR -133 135 27 7 1396 300 229 43 0 chr4 106408830 106408900 -49221220 + PB1D7 SINE Alu 21 93 -27 7 1396 2867 56 13 0 chr4 106409326 106409716 -49220404 - MTB LTR MaLR 0 400 6 7 1396 1339 78 16 10 chr4 106409716 106409910 -49220210 + B2_Mm2 SINE B2 1 195 0 7 1396 27 0 0 0 chr4 106410343 106410370 -49219750 + GC_rich Low_complexity Low_complexity 1 27 0 7 1396 481 280 0 0 chr4 106410432 106410550 -49219570 + ID_B1 SINE B4 84 201 -23 7 1396 305 281 33 3 chr4 106410761 106410869 -49219251 - MIR SINE MIR -101 161 59 7 1396 274 321 0 13 chr4 106411193 106411272 -49218848 - ID4_ SINE ID -2 81 4 7 1396 378 0 0 0 chr4 106411340 106411382 -49218738 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1396 819 113 16 0 chr4 106411382 106411506 -49218614 - B1_Mur3 SINE Alu -22 127 2 7 1396 356 228 26 105 chr4 106411506 106411547 -49218573 - MT2B LTR ERVL -448 153 125 7 1396 290 268 14 0 chr4 106411512 106411583 -49218537 - ID_B1 SINE B4 -72 152 81 7 1396 1060 148 35 35 chr4 106411702 106411905 -49218215 + B3 SINE B2 4 206 -10 7 1396 1279 87 11 5 chr4 106411926 106412111 -49218009 + B2_Mm1t SINE B2 2 187 -6 7 1396 694 131 197 0 chr4 106412133 106412255 -49217865 + B1_Mur4 SINE Alu 5 150 0 7 1396 414 202 20 168 chr4 106412418 106412567 -49217553 + ID_B1 SINE B4 93 219 -5 7 1396 229 253 67 0 chr4 106412774 106412849 -49217271 + PB1D10 SINE Alu 30 109 -8 7 1396 414 243 47 67 chr4 106412858 106413008 -49217112 + B1_Mur1 SINE Alu 2 148 -1 7 1396 673 260 66 5 chr4 106413104 106413301 -49216819 + B3 SINE B2 2 210 -6 7 1396 244 278 75 43 chr4 106413945 106414039 -49216081 + MT2B LTR ERVL 162 258 -343 7 1396 257 227 186 0 chr4 106413976 106414073 -49216047 + B1_Mur1 SINE Alu 35 149 0 7 1396 1171 55 0 0 chr4 106414077 106414223 -49215897 + B1_Mus2 SINE Alu 2 147 0 7 1396 767 98 162 44 chr4 106414258 106414393 -49215727 + B2_Mm1t SINE B2 1 153 -40 7 1396 261 109 0 0 chr4 106414393 106414439 -49215681 + (TAG)n Simple_repeat Simple_repeat 1 46 0 7 1396 767 98 162 44 chr4 106414439 106414463 -49215657 + B2_Mm1t SINE B2 154 179 -14 7 1396 277 124 375 0 chr4 106414477 106414581 -49215539 + B2_Mm2 SINE B2 48 190 -5 7 1396 539 276 42 7 chr4 106416112 106416254 -49213866 - RSINE1 SINE B4 -15 150 4 7 1396 847 144 211 11 chr4 106416330 106416505 -49213615 - B3 SINE B2 -6 210 1 7 1396 283 286 43 0 chr4 106416511 106416616 -49213504 - B1F2 SINE Alu 0 120 9 7 1396 194 0 0 37 chr4 106416630 106416657 -49213463 + (TGG)n Simple_repeat Simple_repeat 3 28 0 7 1396 286 278 11 43 chr4 106416701 106416795 -49213325 - ID_B1 SINE B4 -11 213 123 7 1396 387 358 94 13 chr4 106417141 106417365 -49212755 - MIRb SINE MIR 0 268 27 7 1396 533 228 32 8 chr4 106417568 106417692 -49212428 - ID_B1 SINE B4 -5 219 93 7 1396 564 89 0 0 chr4 106419076 106419155 -49210965 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1396 338 256 16 23 chr4 106422780 106422908 -49207212 + (CA)n Simple_repeat Simple_repeat 2 128 0 7 1396 1527 231 64 12 chr4 106422932 106423274 -49206846 + MTE2a LTR MaLR 10 369 -10 7 1396 378 264 52 147 chr4 106424070 106424261 -49205859 - B4A SINE B4 -116 176 4 7 1396 253 267 32 43 chr4 106424529 106424623 -49205497 + B3A SINE B2 11 103 -95 7 1396 215 311 71 39 chr4 106424623 106424650 -49205470 + RSINE1 SINE B4 26 136 -29 7 1396 1146 103 53 26 chr4 106424744 106424933 -49205187 + B2_Mm2 SINE B2 2 195 0 7 1396 737 204 131 86 chr4 106424950 106425148 -49204972 + B3 SINE B2 2 208 -8 7 1396 248 302 74 41 chr4 106425149 106425270 -49204850 - MIRc SINE MIR -124 144 20 7 1396 1194 169 9 5 chr4 106425762 106425976 -49204144 + B3 SINE B2 2 216 0 7 1396 332 216 22 43 chr4 106427229 106427321 -49202799 - PB1D10 SINE Alu -1 116 27 7 1396 416 230 8 81 chr4 106427511 106427634 -49202486 + B1F1 SINE Alu 36 149 0 7 1396 1237 82 35 0 chr4 106427653 106427824 -49202296 + B2_Mm2 SINE B2 2 178 -17 8 1396 208 167 0 23 chr4 106428653 106428696 -49201424 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1396 434 172 18 14 chr4 106428908 106429000 -49201120 + RSINE1 SINE B4 1 94 -198 8 1396 345 312 0 27 chr4 106429095 106429207 -49200913 + PB1D10 SINE Alu 1 109 -8 8 1396 653 256 115 8 chr4 106429253 106429513 -49200607 + B4 SINE B4 1 288 -4 8 1396 730 134 97 0 chr4 106429558 106429692 -49200428 - B1_Mur2 SINE Alu 0 149 3 8 1396 477 200 15 84 chr4 106429700 106429831 -49200289 - B1_Mus2 SINE Alu -2 145 24 8 1396 1184 75 1 0 chr4 106430164 106430326 -49199794 + B2_Mm2 SINE B2 1 180 -36 8 1396 207 0 0 0 chr4 106430326 106430349 -49199771 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1396 716 225 118 0 chr4 106430349 106430373 -49199747 + B3 SINE B2 181 208 -8 8 1396 261 299 15 0 chr4 106430373 106430440 -49199680 - MIR SINE MIR -163 99 32 8 1397 1221 91 11 0 chr4 106431304 106431480 -49198640 - B2_Mm1t SINE B2 -14 179 2 8 1397 1390 40 23 0 chr4 106431497 106431673 -49198447 - B2_Mm2 SINE B2 -14 181 2 8 1397 760 98 0 62 chr4 106432010 106432140 -49197980 - B1_Mus1 SINE Alu -26 122 1 8 1397 295 229 30 143 chr4 106432140 106432187 -49197933 - MT2B2 LTR ERVL -441 143 116 8 1397 329 253 0 46 chr4 106433772 106433859 -49196261 - PB1D10 SINE Alu -33 84 2 8 1397 640 214 27 7 chr4 106433869 106434015 -49196105 - B1F SINE Alu 0 149 1 8 1397 284 341 23 23 chr4 106435298 106435427 -49194693 + MIRb SINE MIR 66 194 -74 8 1397 285 244 230 52 chr4 106436691 106436903 -49193217 - MIRb SINE MIR -39 229 1 8 1397 199 211 153 13 chr4 106437190 106437298 -49192822 + MIRc SINE MIR 71 197 -79 8 1397 1570 36 0 0 chr4 106437525 106437717 -49192403 - B2_Mm1t SINE B2 0 193 2 8 1397 861 153 230 23 chr4 106437775 106437949 -49192171 + B3 SINE B2 2 211 -5 8 1397 486 252 29 7 chr4 106438177 106438313 -49191807 - B1F1 SINE Alu -10 139 1 8 1397 462 379 6 0 chr4 106438313 106438482 -49191638 + Tigger7 DNA MER2_type 2322 2491 0 8 1397 689 258 40 0 chr4 106438527 106438678 -49191442 + B3A SINE B2 1 157 -41 8 1397 294 73 0 0 chr4 106438680 106438721 -49191399 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1397 644 96 142 16 chr4 106438740 106438867 -49191253 - B1_Mur4 SINE Alu -2 148 6 8 1397 212 163 93 0 chr4 106438873 106438959 -49191161 + (TATAA)n Simple_repeat Simple_repeat 2 95 0 8 1397 315 307 47 0 chr4 106439321 106439448 -49190672 + L1MC5 LINE L1 7362 7494 -467 8 1397 225 94 0 0 chr4 106439448 106439480 -49190640 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 8 1397 306 195 129 65 chr4 106439756 106439849 -49190271 - PB1D10 SINE Alu -1 116 18 8 1397 23 33 0 0 chr4 106439869 106439899 -49190221 + AT_rich Low_complexity Low_complexity 1 30 0 8 1397 262 132 0 106 chr4 106439908 106439993 -49190127 + T-rich Low_complexity Low_complexity 3 78 0 8 1397 940 64 48 41 chr4 106439994 106440140 -49189980 - B1_Mm SINE Alu 0 147 1 8 1397 266 312 8 68 chr4 106440148 106440265 -49189855 - PB1D10 SINE Alu -7 110 1 8 1397 478 274 39 19 chr4 106440588 106440744 -49189376 + MIR SINE MIR 8 166 -96 8 1397 369 181 28 0 chr4 106441295 106441367 -49188753 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 8 1397 1194 108 0 49 chr4 106441526 106441730 -49188390 - B2_Mm2 SINE B2 0 195 2 8 1397 1964 176 76 0 chr4 106441731 106442112 -49188008 - MTD LTR MaLR -5 414 5 8 1397 262 281 67 19 chr4 106442838 106442943 -49187177 - MIR3 SINE MIR -17 191 82 8 1397 1322 83 0 6 chr4 106444542 106444723 -49185397 + B2_Mm2 SINE B2 2 181 -14 8 1397 257 217 40 68 chr4 106444725 106444794 -49185326 + B4A SINE B4 26 92 -200 8 1397 347 187 70 90 chr4 106444794 106444894 -49185226 + ORR1D1 LTR MaLR 1 98 -276 8 1397 2515 136 110 13 chr4 106444876 106445339 -49184781 + RMER4B LTR ERVK 78 585 0 8 1397 1239 128 151 4 chr4 106445339 106445587 -49184533 + ORR1D1 LTR MaLR 90 374 0 8 1397 565 228 26 40 chr4 106445816 106445967 -49184153 + B4A SINE B4 140 288 -4 8 1397 402 266 181 40 chr4 106446045 106446272 -49183848 + L1MB3 LINE L1 5806 6064 -119 8 1397 1171 91 34 0 chr4 106446273 106446448 -49183672 + B2_Mm2 SINE B2 1 181 -14 8 1397 252 0 0 0 chr4 106446460 106446488 -49183632 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1397 1097 42 14 0 chr4 106446488 106446622 -49183498 - B1_Mm SINE Alu -9 138 3 8 1397 553 244 8 0 chr4 106446719 106446850 -49183270 + B1_Mur1 SINE Alu 3 134 -15 8 1397 1210 47 0 0 chr4 106446862 106447010 -49183110 + B1_Mus1 SINE Alu 1 148 0 8 1397 525 165 25 0 chr4 106447014 106447135 -49182985 + GA-rich Low_complexity Low_complexity 3 126 0 8 1397 846 0 0 0 chr4 106447135 106447229 -49182891 + (GGAAA)n Simple_repeat Simple_repeat 2 95 0 8 1397 1174 47 0 7 chr4 106447728 106447877 -49182243 + B1_Mus1 SINE Alu 1 148 0 8 1397 1210 108 17 0 chr4 106448450 106448626 -49181494 + B2_Mm1t SINE B2 1 179 -14 8 1397 230 120 0 57 chr4 106448708 106448761 -49181359 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 8 1397 180 0 0 0 chr4 106448761 106448781 -49181339 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1397 394 304 17 9 chr4 106448876 106448992 -49181128 - MIR SINE MIR -29 233 117 8 1397 597 130 82 18 chr4 106449357 106449467 -49180653 + B1_Mur4 SINE Alu 28 144 -6 8 1397 683 185 0 7 chr4 106449480 106449632 -49180488 + GA-rich Low_complexity Low_complexity 4 154 0 8 1397 1413 113 14 5 chr4 106449963 106450186 -49179934 - URR1A DNA MER1_type 0 226 2 8 1397 204 268 35 47 chr4 106450313 106450399 -49179721 - MIRc SINE MIR -61 207 123 8 1397 513 0 0 0 chr4 106450470 106450527 -49179593 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1397 216 86 0 0 chr4 106450602 106450637 -49179483 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 8 1397 871 164 7 0 chr4 106452236 106452382 -49177738 + B1_Mur2 SINE Alu 1 147 -2 8 1397 315 0 0 0 chr4 106452931 106452966 -49177154 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1397 352 263 20 31 chr4 106453958 106454056 -49176064 + PB1D10 SINE Alu 1 97 -20 8 1397 1319 191 6 120 chr4 106454059 106454416 -49175704 + ORR1D1 LTR MaLR 2 317 -57 8 1397 862 55 54 16 chr4 106454407 106454536 -49175584 + B2_Mm2 SINE B2 48 181 -14 8 1397 234 208 13 65 chr4 106454524 106454601 -49175519 + ORR1D1 LTR MaLR 298 370 0 8 1397 573 284 38 5 chr4 106454785 106454969 -49175151 + B3A SINE B2 1 190 -8 8 1397 1271 74 0 0 chr4 106454989 106455148 -49174972 + B2_Mm1a SINE B2 2 160 -33 8 1397 216 0 0 0 chr4 106455148 106455172 -49174948 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 8 1397 1271 74 0 0 chr4 106455172 106455188 -49174932 + B2_Mm1a SINE B2 161 176 -17 8 1397 24 0 0 0 chr4 106455222 106455246 -49174874 + AT_rich Low_complexity Low_complexity 1 24 0 8 1397 448 238 0 28 chr4 106455283 106455391 -49174729 + B4A SINE B4 186 290 -2 8 1397 421 152 114 0 chr4 106456396 106456475 -49173645 - PB1D7 SINE Alu -10 110 23 8 1397 249 287 81 98 chr4 106456496 106456670 -49173450 + RMER5 LTR ERV1 143 313 -221 8 1397 224 309 39 49 chr4 106457006 106457108 -49173012 + MIRb SINE MIR 128 228 -40 8 1397 372 171 14 14 chr4 106457482 106457553 -49172567 - B1F SINE Alu -2 147 77 8 1397 391 313 40 62 chr4 106457602 106457779 -49172341 - MIR SINE MIR -62 200 28 8 1397 221 344 6 44 chr4 106458640 106458798 -49171322 + GA-rich Low_complexity Low_complexity 1 152 0 8 1397 22 0 0 0 chr4 106458837 106458859 -49171261 + GC_rich Low_complexity Low_complexity 1 22 0 8 1397 297 238 49 12 chr4 106459628 106459709 -49170411 + MIRm SINE MIR 70 153 -123 8 1397 225 356 11 0 chr4 106460442 106460529 -49169591 + L3 LINE CR1 3773 3860 -629 8 1397 1011 201 63 5 chr4 106460964 106461169 -49168951 + ID_B1 SINE B4 8 224 0 8 1397 1092 305 39 26 chr4 106462063 106462447 -49167673 + MLT1H1 LTR MaLR 141 529 -26 8 1397 999 91 58 7 chr4 106462919 106463074 -49167046 + B2_Mm2 SINE B2 2 164 -31 8 1397 524 56 14 0 chr4 106463106 106463178 -49166942 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 8 1397 1242 41 29 0 chr4 106463178 106463349 -49166771 + (GGGAA)n Simple_repeat Simple_repeat 2 177 0 8 1397 315 0 0 0 chr4 106463352 106463387 -49166733 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1397 553 247 0 102 chr4 106464024 106464191 -49165929 - RSINE1 SINE B4 0 165 16 8 1397 284 304 210 22 chr4 106464342 106464571 -49165549 + B4A SINE B4 2 273 -19 8 1397 594 167 5 54 chr4 106464659 106464843 -49165277 + (CATA)n Simple_repeat Simple_repeat 4 178 0 8 1397 295 215 0 0 chr4 106464843 106464908 -49165212 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1397 351 236 56 0 chr4 106465323 106465412 -49164708 + ID_B1 SINE B4 93 186 -38 8 1397 288 271 10 50 chr4 106465412 106465424 -49164696 + PB1D10 SINE Alu 12 108 -9 8 1397 221 350 103 55 chr4 106465786 106466058 -49164062 + L2b LINE L2 3029 3313 -62 8 1397 1275 73 5 64 chr4 106466327 106466531 -49163589 - B2_Mm2 SINE B2 -2 193 2 8 1397 828 170 62 11 chr4 106466550 106466728 -49163392 - B3 SINE B2 -1 215 29 8 1397 403 67 0 0 chr4 106466746 106466806 -49163314 - L1_Mus2 LINE L1 -9 6557 6498 8 1397 224 128 0 25 chr4 106466809 106466849 -49163271 - B3A SINE B2 -159 39 1 8 1397 732 175 7 28 chr4 106467590 106467731 -49162389 + B1_Mur1 SINE Alu 5 142 -7 8 1397 283 298 21 0 chr4 106468064 106468158 -49161962 + MIR SINE MIR 39 134 -128 8 1397 180 0 0 0 chr4 106468158 106468178 -49161942 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1397 946 116 14 7 chr4 106468188 106468335 -49161785 - B1_Mur4 SINE Alu -1 149 2 9 1397 793 328 14 20 chr4 106469156 106469449 -49160671 - B4A SINE B4 0 292 2 9 1397 512 222 19 0 chr4 106469466 106469574 -49160546 + PB1D10 SINE Alu 8 117 0 9 1397 444 186 0 44 chr4 106469870 106469960 -49160160 + ID_B1 SINE B4 136 221 -3 9 1397 438 199 40 36 chr4 106470243 106470366 -49159754 + MIRb SINE MIR 16 142 -134 9 1397 1108 230 90 27 chr4 106470402 106470701 -49159419 - MTEb LTR MaLR -1 378 61 9 1397 234 272 155 62 chr4 106470588 106470749 -49159371 - MT2A LTR ERVL -357 176 1 9 1397 206 367 11 0 chr4 106471070 106471160 -49158960 - L2c LINE L2 -217 3170 3080 9 1397 581 178 24 41 chr4 106473548 106473671 -49156449 + B1F SINE Alu 29 149 0 9 1397 645 262 14 71 chr4 106473681 106473891 -49156229 + B3A SINE B2 1 198 0 9 1397 859 256 51 13 chr4 106473918 106474155 -49155965 + B4A SINE B4 1 246 -46 9 1397 282 29 0 0 chr4 106474155 106474190 -49155930 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 9 1397 443 203 36 108 chr4 106474198 106474232 -49155888 + RSINE1 SINE B4 11 44 -121 9 1397 2230 132 50 8 chr4 106474232 106474592 -49155528 + ORR1C1 LTR MaLR 2 376 -2 9 1397 443 203 36 108 chr4 106474592 106474723 -49155397 + RSINE1 SINE B4 45 163 -2 9 1397 2757 77 5 5 chr4 106474788 106475180 -49154940 + MTB LTR MaLR 3 394 -6 9 1397 271 275 50 132 chr4 106476053 106476126 -49153994 - MER5A DNA MER1_type -8 181 114 9 1397 979 206 34 0 chr4 106476126 106476335 -49153785 - B3 SINE B2 0 216 1 9 1397 271 275 50 132 chr4 106476335 106476420 -49153700 - MER5A DNA MER1_type -76 113 36 9 1397 235 182 0 0 chr4 106476506 106476550 -49153570 + L2b LINE L2 3119 3162 -213 9 1397 626 158 72 40 chr4 106477996 106478121 -49151999 - B1_Mur3 SINE Alu 0 149 21 9 1397 401 214 45 0 chr4 106479239 106479328 -49150792 - PB1D10 SINE Alu -8 109 17 9 1397 455 281 103 0 chr4 106479254 106479400 -49150720 - ID_B1 SINE B4 -52 172 12 9 1397 22 0 0 0 chr4 106479416 106479438 -49150682 + AT_rich Low_complexity Low_complexity 1 22 0 9 1397 262 333 8 58 chr4 106479505 106479626 -49150494 - B4 SINE B4 -18 274 160 9 1397 1405 115 37 0 chr4 106479660 106479878 -49150242 + URR1A DNA MER1_type 1 226 0 9 1397 506 335 32 0 chr4 106479907 106480065 -49150055 + RSINE1 SINE B4 3 165 0 9 1397 315 0 0 0 chr4 106480066 106480101 -49150019 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1397 359 262 146 41 chr4 106480105 106480245 -49149875 + B3A SINE B2 1 159 -39 9 1397 741 23 0 0 chr4 106480245 106480332 -49149788 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1397 359 262 146 41 chr4 106480332 106480362 -49149758 + B3A SINE B2 160 189 -9 9 1397 734 215 0 20 chr4 106480389 106480536 -49149584 + B1_Mur2 SINE Alu 6 149 0 9 1397 243 0 0 0 chr4 106480538 106480565 -49149555 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1397 439 171 243 0 chr4 106480573 106480684 -49149436 + B1_Mus1 SINE Alu 6 143 -5 9 1397 429 276 34 8 chr4 106480684 106480801 -49149319 + RSINE1 SINE B4 44 163 -2 9 1397 23 33 0 0 chr4 106480830 106480860 -49149260 + AT_rich Low_complexity Low_complexity 1 30 0 9 1397 987 234 40 124 chr4 106480883 106480910 -49149210 - MTE2a LTR MaLR -9 370 343 9 1397 2153 101 9 6 chr4 106480910 106481238 -49148882 - ORR1A4 LTR MaLR 0 329 1 9 1397 987 234 40 124 chr4 106481238 106481435 -49148685 - MTE2a LTR MaLR -37 342 169 9 1397 951 46 122 0 chr4 106481435 106481566 -49148554 - B1_Mus2 SINE Alu 0 147 1 9 1397 987 234 40 124 chr4 106481566 106481666 -49148454 - MTE2a LTR MaLR -211 168 74 9 1397 496 216 0 0 chr4 106481666 106481754 -49148366 + B1_Mur3 SINE Alu 1 88 -61 9 1397 2240 62 36 0 chr4 106481760 106482069 -49148051 - L1_Mus3 LINE L1 0 6638 6319 9 1397 463 266 52 5 chr4 106482074 106482267 -49147853 - L1MEc LINE L1 -4009 2391 2190 9 1397 485 251 68 57 chr4 106482281 106482458 -49147662 - Arthur1B DNA Tip100 -956 269 91 9 1397 388 161 36 24 chr4 106482641 106482724 -49147396 - B2_Mm2 SINE B2 -110 85 2 9 1397 717 214 23 51 chr4 106482805 106482942 -49147178 - B3A SINE B2 -25 173 41 9 1397 255 31 0 0 chr4 106482942 106482974 -49147146 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 9 1397 805 152 7 35 chr4 106482974 106483117 -49147003 - B1_Mur4 SINE Alu -10 140 2 9 1397 717 214 23 51 chr4 106483117 106483155 -49146965 - B3A SINE B2 -158 40 3 9 1397 269 161 119 36 chr4 106483273 106483357 -49146763 - B2_Mm2 SINE B2 -9 186 96 9 1397 1059 68 20 0 chr4 106483355 106483503 -49146617 + B2_Mm2 SINE B2 36 186 -9 9 1397 409 261 26 26 chr4 106483514 106483628 -49146492 + B4A SINE B4 8 121 -171 9 1397 556 278 7 29 chr4 106484732 106484869 -49145251 - RSINE1 SINE B4 -4 161 28 9 1397 567 244 16 0 chr4 106484904 106485031 -49145089 - RSINE1 SINE B4 -7 158 30 9 1397 3237 30 8 0 chr4 106485531 106485924 -49144196 + MTA_Mm LTR MaLR 1 396 0 9 1397 2675 163 96 79 chr4 106485924 106486571 -49143549 - RMER19B LTR ERVK -244 658 1 9 1397 307 202 39 102 chr4 106486592 106486719 -49143401 - Lx8 LINE L1 -1 7472 7354 9 1397 271 58 0 71 chr4 106486720 106486776 -49143344 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 9 1397 246 32 0 0 chr4 106486783 106486814 -49143306 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1397 890 125 22 22 chr4 106486814 106486953 -49143167 - B1_Mur4 SINE Alu -10 140 2 9 1397 252 0 0 0 chr4 106486960 106486988 -49143132 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 9 1397 482 144 34 28 chr4 106487010 106487189 -49142931 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1397 247 144 61 20 chr4 106487280 106487379 -49142741 + (TG)n Simple_repeat Simple_repeat 2 104 0 9 1397 503 152 46 23 chr4 106487406 106487581 -49142539 + (TG)n Simple_repeat Simple_repeat 1 179 0 9 1397 305 291 21 7 chr4 106487598 106487740 -49142380 + (TG)n Simple_repeat Simple_repeat 1 144 0 9 1397 577 299 23 81 chr4 106487742 106488051 -49142069 - B4A SINE B4 0 292 2 9 1397 366 266 14 72 chr4 106488051 106488151 -49141969 + B4 SINE B4 200 291 -1 9 1397 197 276 66 0 chr4 106488181 106488257 -49141863 - MIR SINE MIR -88 120 40 9 1397 26 0 0 0 chr4 106488346 106488372 -49141748 + GC_rich Low_complexity Low_complexity 1 26 0 9 1397 236 277 48 12 chr4 106489075 106489159 -49140961 - MIRc SINE MIR -122 146 60 9 1397 974 122 0 0 chr4 106489392 106489539 -49140581 - B1_Mur4 SINE Alu -2 148 2 9 1397 490 326 58 0 chr4 106489594 106489732 -49140388 - RSINE1 SINE B4 -17 148 3 9 1397 274 331 48 21 chr4 106489886 106490031 -49140089 - MLT1F LTR MaLR -175 373 225 9 1397 672 188 265 0 chr4 106490633 106490803 -49139317 - B3 SINE B2 -1 215 1 9 1397 526 342 19 6 chr4 106491684 106491846 -49138274 + RSINE1 SINE B4 2 165 0 9 1397 25 65 0 0 chr4 106491858 106491904 -49138216 + AT_rich Low_complexity Low_complexity 1 46 0 9 1397 711 183 8 22 chr4 106491928 106492062 -49138058 - B1_Mur2 SINE Alu -6 143 12 9 1397 287 274 9 113 chr4 106491970 106492085 -49138035 - MT2B LTR ERVL -344 257 155 9 1397 260 354 8 33 chr4 106492090 106492210 -49137910 + B3 SINE B2 3 119 -97 9 1397 266 176 23 23 chr4 106492380 106492467 -49137653 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 1397 598 253 90 6 chr4 106492552 106492719 -49137401 + B3A SINE B2 2 182 -16 9 1397 216 271 0 17 chr4 106492756 106492816 -49137304 + GA-rich Low_complexity Low_complexity 3 61 0 9 1397 3125 155 183 76 chr4 106492860 106493675 -49136445 - RMER19B LTR ERVK 0 902 1 9 1397 623 245 24 30 chr4 106493721 106493885 -49136235 + RSINE1 SINE B4 3 165 0 9 1397 734 186 14 14 chr4 106494149 106494296 -49135824 - B1_Mur2 SINE Alu 0 149 3 9 1397 988 156 94 0 chr4 106494307 106494499 -49135621 - B3 SINE B2 -6 210 1 9 1397 289 194 97 0 chr4 106494709 106494771 -49135349 - PB1D9 SINE Alu -17 103 36 9 1397 375 23 0 0 chr4 106495061 106495105 -49135015 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1397 249 108 0 0 chr4 106495105 106495142 -49134978 + (CTTG)n Simple_repeat Simple_repeat 1 37 0 9 1397 694 124 30 24 chr4 106495142 106495307 -49134813 + CT-rich Low_complexity Low_complexity 1 166 0 9 1397 884 89 0 53 chr4 106495292 106495482 -49134638 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1397 247 146 0 40 chr4 106495514 106495564 -49134556 + B1F SINE Alu 102 149 0 9 1397 268 261 29 14 chr4 106495659 106495729 -49134391 + CT-rich Low_complexity Low_complexity 5 75 0 9 1397 1352 145 0 9 chr4 106495763 106495986 -49134134 + RMER19B LTR ERVK 1 221 -681 9 1397 2219 171 86 40 chr4 106495973 106496498 -49133622 + RMER19B LTR ERVK 337 885 -17 9 1397 1505 43 11 0 chr4 106496499 106496684 -49133436 + B2_Mm1t SINE B2 1 187 -6 9 1397 1130 74 0 0 chr4 106496710 106496858 -49133262 + B1_Mus1 SINE Alu 1 148 0 9 1397 421 190 0 12 chr4 106497269 106497354 -49132766 + PB1D10 SINE Alu 32 115 -2 9 1397 240 35 0 0 chr4 106497818 106497847 -49132273 + (CAGCT)n Simple_repeat Simple_repeat 3 31 0 9 1397 207 282 0 46 chr4 106498680 106498810 -49131310 + C-rich Low_complexity Low_complexity 2 125 0 9 1397 594 260 32 7 chr4 106498976 106499131 -49130989 + RSINE1 SINE B4 3 161 -4 9 1397 351 0 0 0 chr4 106499236 106499275 -49130845 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1397 790 94 126 0 chr4 106499743 106499870 -49130250 + B1_Mur4 SINE Alu 1 143 -7 9 1397 194 0 39 0 chr4 106499870 106499896 -49130224 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1397 278 300 62 0 chr4 106500111 106500191 -49129929 - MIRb SINE MIR -176 92 8 1 1397 324 0 0 0 chr4 106501061 106501097 -49129023 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1397 210 143 0 0 chr4 106501668 106501703 -49128417 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 3 1397 209 274 187 9 chr4 106501839 106501946 -49128174 + L2c LINE L2 3136 3261 -126 4 1397 516 72 0 0 chr4 106501947 106502016 -49128104 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1397 910 179 87 27 chr4 106502054 106502238 -49127882 - B3A SINE B2 0 198 4 6 1397 360 291 99 60 chr4 106502278 106502530 -49127590 - B4A SINE B4 -19 273 12 7 1397 255 69 33 33 chr4 106502540 106502600 -49127520 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 8 1397 585 246 71 21 chr4 106502600 106502741 -49127379 - B1F1 SINE Alu -1 148 1 9 1397 389 288 54 0 chr4 106502746 106502857 -49127263 - PB1D7 SINE Alu 0 120 4 1 1397 265 335 71 85 chr4 106502972 106503361 -49126759 - MLT1G1 LTR MaLR -14 565 171 1 1397 446 169 45 0 chr4 106503368 106503457 -49126663 + PB1D10 SINE Alu 25 117 0 1 1397 283 247 178 11 chr4 106503505 106503595 -49126525 - PB1D10 SINE Alu -12 105 1 1 1397 243 88 0 0 chr4 106503606 106503640 -49126480 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1397 948 134 0 0 chr4 106503643 106503777 -49126343 - B1_Mus1 SINE Alu -13 135 2 1 1397 339 85 0 0 chr4 106504201 106504248 -49125872 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1 1397 231 217 0 0 chr4 106504683 106504743 -49125377 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1397 270 222 0 0 chr4 106504743 106504797 -49125323 + B1_Mm SINE Alu 49 102 -45 1 1397 488 16 0 16 chr4 106504797 106504859 -49125261 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1397 276 53 0 0 chr4 106504870 106504908 -49125212 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1397 1007 84 51 6 chr4 106504908 106505058 -49125062 - B2_Mm2 SINE B2 -36 159 2 2 1397 245 358 88 2 chr4 106505470 106505640 -49124480 - MIR SINE MIR -69 193 11 2 1397 214 147 0 0 chr4 106505873 106505907 -49124213 + (C)n Simple_repeat Simple_repeat 1 34 0 2 1397 951 159 14 0 chr4 106506005 106506150 -49123970 - B1_Mus2 SINE Alu 0 147 1 2 1397 261 0 0 0 chr4 106506507 106506536 -49123584 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1397 1094 43 7 21 chr4 106506536 106506677 -49123443 - B1_Mus1 SINE Alu -9 139 1 2 1397 273 29 0 0 chr4 106506683 106506717 -49123403 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1397 1323 105 26 21 chr4 106506743 106506937 -49123183 + B2_Mm2 SINE B2 1 195 0 2 1397 1108 79 14 0 chr4 106507141 106507281 -49122839 - B1_Mm SINE Alu -4 143 2 2 1397 390 234 169 0 chr4 106507834 106507958 -49122162 + B1F2 SINE Alu 4 148 -1 3 1397 308 91 0 52 chr4 106507959 106507985 -49122135 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1397 1224 68 0 0 chr4 106507985 106508133 -49121987 + B1_Mus1 SINE Alu 1 148 0 3 1397 308 91 0 52 chr4 106508133 106508164 -49121956 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1397 1092 122 0 0 chr4 106508167 106508314 -49121806 + B1_Mus2 SINE Alu 1 147 0 3 1397 1071 139 0 0 chr4 106508325 106508505 -49121615 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1397 303 289 83 26 chr4 106509498 106509637 -49120483 + B1F2 SINE Alu 4 142 -7 3 1397 627 144 127 0 chr4 106509879 106509997 -49120123 + B1_Mus2 SINE Alu 10 142 -5 3 1397 388 184 26 0 chr4 106510028 106510104 -49120016 + B1_Mur1 SINE Alu 70 147 -2 3 1397 217 167 48 0 chr4 106510970 106511012 -49119108 - MIR3 SINE MIR -53 155 112 3 1397 27 49 0 0 chr4 106511767 106511808 -49118312 + GC_rich Low_complexity Low_complexity 1 41 0 4 1397 22 80 0 0 chr4 106512768 106512818 -49117302 + GC_rich Low_complexity Low_complexity 1 50 0 4 1397 24 53 0 0 chr4 106513752 106513790 -49116330 + AT_rich Low_complexity Low_complexity 1 38 0 4 1397 297 0 0 0 chr4 106514661 106514694 -49115426 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1397 428 257 76 0 chr4 106514703 106514808 -49115312 - RSINE1 SINE B4 -43 122 10 4 1397 213 139 0 0 chr4 106515176 106515219 -49114901 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 4 1397 220 301 181 0 chr4 106516002 106516085 -49114035 - L3 LINE CR1 -105 4384 4287 4 1397 344 303 6 0 chr4 106516495 106516673 -49113447 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1397 272 305 0 47 chr4 106516728 106516814 -49113306 + B1F SINE Alu 42 123 -26 4 1397 716 233 43 27 chr4 106516987 106517172 -49112948 + B2_Mm2 SINE B2 1 188 -7 4 1397 1271 41 0 0 chr4 106517181 106517326 -49112794 + B1_Mus1 SINE Alu 3 147 -1 5 1397 1002 129 95 6 chr4 106517346 106517525 -49112595 + B2_Mm2 SINE B2 1 195 0 5 1397 1198 65 18 0 chr4 106517520 106517690 -49112430 + B2_Mm2 SINE B2 9 181 -14 5 1397 360 244 91 84 chr4 106517713 106517776 -49112344 + B1_Mm SINE Alu 4 64 -83 5 1397 1198 74 0 0 chr4 106517776 106517924 -49112196 + B1_Mus1 SINE Alu 1 148 0 5 1397 360 244 91 84 chr4 106517924 106518003 -49112117 + B1_Mm SINE Alu 65 147 0 5 1397 185 77 0 88 chr4 106518054 106518111 -49112009 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 1397 310 198 174 0 chr4 106518317 106518403 -49111717 + PB1D10 SINE Alu 17 117 0 5 1397 803 242 49 15 chr4 106518883 106519088 -49111032 + B3 SINE B2 5 216 0 5 1397 926 169 7 7 chr4 106519093 106519242 -49110878 + B1_Mur3 SINE Alu 1 149 0 5 1397 887 144 0 27 chr4 106519249 106519434 -49110686 + GA-rich Low_complexity Low_complexity 1 180 0 5 1397 397 232 10 69 chr4 106519456 106519558 -49110562 + B1F SINE Alu 17 112 -37 6 1397 219 268 57 76 chr4 106520256 106520361 -49109759 - MIR SINE MIR -76 132 30 6 1397 379 203 14 0 chr4 106521749 106521818 -49108302 + B1_Mur3 SINE Alu 8 77 -72 6 1397 294 27 0 0 chr4 106521820 106521842 -49108278 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1397 1085 71 50 0 chr4 106521842 106521982 -49108138 + B1_Mm SINE Alu 1 147 0 6 1397 294 27 0 0 chr4 106521982 106521996 -49108124 + (A)n Simple_repeat Simple_repeat 1 14 0 6 1397 609 60 0 35 chr4 106521996 106522083 -49108037 - B2_Mm2 SINE B2 -108 87 4 6 1397 964 178 194 0 chr4 106522103 106522283 -49107837 - B3 SINE B2 0 216 2 6 1397 381 252 102 9 chr4 106522330 106522438 -49107682 - RSINE1 SINE B4 -36 129 12 6 1397 288 0 0 0 chr4 106522463 106522495 -49107625 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1397 1534 32 15 64 chr4 106522520 106522723 -49107397 + B2_Mm1a SINE B2 1 193 0 7 1397 730 210 0 14 chr4 106522729 106522869 -49107251 - B1_Mur4 SINE Alu -12 138 1 7 1397 560 296 71 58 chr4 106522869 106522950 -49107170 + MER113 DNA MER1_type 130 202 -319 7 1397 306 255 172 10 chr4 106522950 106523049 -49107071 - PB1D10 SINE Alu 0 117 3 7 1397 560 296 71 58 chr4 106523049 106523275 -49106845 + MER113 DNA MER1_type 203 441 -80 7 1397 443 138 160 0 chr4 106523531 106523625 -49106495 - B1_Mur2 SINE Alu 0 149 41 7 1397 780 190 0 7 chr4 106523651 106523789 -49106331 - B1_Mur4 SINE Alu -13 137 1 7 1397 307 157 0 0 chr4 106523790 106523841 -49106279 + ID_B1 SINE B4 173 223 -1 7 1397 426 308 26 0 chr4 106523844 106523961 -49106159 + B4A SINE B4 2 121 -171 7 1397 231 374 24 0 chr4 106524036 106524119 -49106001 + RSINE1 SINE B4 79 163 -2 7 1397 363 216 14 0 chr4 106524373 106524447 -49105673 - BC1_Mm scRNA scRNA -70 82 8 7 1397 228 86 0 0 chr4 106524538 106524573 -49105547 + (G)n Simple_repeat Simple_repeat 1 35 0 8 1397 1408 86 21 0 chr4 106525051 106525237 -49104883 - B2_Mm2 SINE B2 -3 192 3 8 1397 1121 43 51 0 chr4 106525703 106525841 -49104279 + B1_Mm SINE Alu 1 145 -2 8 1397 399 21 0 0 chr4 106525841 106525889 -49104231 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 8 1397 1122 64 21 0 chr4 106525938 106526079 -49104041 - B1_Mus1 SINE Alu -2 146 3 8 1397 331 259 0 108 chr4 106526079 106526209 -49103911 - PB1D10 SINE Alu -1 116 1 8 1397 220 301 27 0 chr4 106526475 106526548 -49103572 + BC1_Mm scRNA scRNA 14 88 -64 8 1397 378 0 0 0 chr4 106527227 106527269 -49102851 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1397 187 274 36 110 chr4 106527811 106527923 -49102197 + MIRb SINE MIR 49 159 -109 8 1397 758 117 78 0 chr4 106528153 106528281 -49101839 + B1_Mur1 SINE Alu 12 149 0 8 1397 594 179 8 57 chr4 106529853 106529977 -49100143 + B3 SINE B2 2 119 -97 9 1397 783 129 145 0 chr4 106530043 106530167 -49099953 + B1_Mur4 SINE Alu 3 144 -6 9 1397 1178 62 7 7 chr4 106530174 106530321 -49099799 + B1_Mus2 SINE Alu 1 147 0 9 1397 201 116 47 0 chr4 106530321 106530364 -49099756 + A-rich Low_complexity Low_complexity 6 50 0 9 1397 812 28 0 0 chr4 106530605 106530712 -49099408 - B2_Mm1t SINE B2 0 193 87 9 1397 283 297 77 29 chr4 106530809 106530913 -49099207 - MER115 DNA Tip100 -493 200 92 9 1397 1259 48 0 0 chr4 106531280 106531427 -49098693 + B1_Mus2 SINE Alu 1 147 0 9 1397 885 203 91 5 chr4 106531507 106531705 -49098415 + B3 SINE B2 2 216 0 9 1397 287 241 136 11 chr4 106531726 106531814 -49098306 + RSINE1 SINE B4 13 111 -54 9 1397 189 0 0 0 chr4 106531874 106531895 -49098225 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9 1397 697 262 0 18 chr4 106532932 106533099 -49097021 + RSINE1 SINE B4 2 165 0 1 1397 246 176 0 0 chr4 106533099 106533150 -49096970 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1397 251 196 157 0 chr4 106533160 106533211 -49096909 + B3 SINE B2 28 86 -130 1 1397 369 131 0 0 chr4 106533225 106533286 -49096834 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1397 297 200 133 0 chr4 106533296 106533356 -49096764 + B3 SINE B2 28 95 -121 1 1397 25 0 0 0 chr4 106533369 106533394 -49096726 + AT_rich Low_complexity Low_complexity 1 25 0 1 1397 885 186 40 58 chr4 106533458 106533681 -49096439 + Lx4B LINE L1 6831 7049 -9 1 1397 244 227 39 39 chr4 106533949 106534027 -49096093 - PB1D9 SINE Alu -1 119 42 1 1397 794 164 1 2 chr4 106535262 106535407 -49094713 + B1_Mur4 SINE Alu 6 149 -1 1 1397 338 206 0 179 chr4 106535542 106535654 -49094466 + PB1D10 SINE Alu 9 100 -17 1 1397 415 162 0 59 chr4 106536531 106536616 -49093504 - PB1D10 SINE Alu -1 116 37 1 1397 227 297 32 21 chr4 106536619 106536712 -49093408 + MIR SINE MIR 56 149 -59 1 1397 465 19 0 0 chr4 106536986 106537040 -49093080 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1397 808 162 21 0 chr4 106537151 106537293 -49092827 - B1_Mur2 SINE Alu 0 149 5 1 1397 284 294 96 64 chr4 106537386 106537542 -49092578 - RSINE1 SINE B4 -2 163 3 1 1397 481 297 138 15 chr4 106537545 106537740 -49092380 - B4 SINE B4 -73 219 1 1 1397 485 257 81 0 chr4 106539040 106539176 -49090944 + ID_B1 SINE B4 67 213 -11 1 1397 414 355 33 0 chr4 106539176 106539328 -49090792 + RSINE1 SINE B4 2 158 -7 1 1397 242 229 0 0 chr4 106539841 106539889 -49090231 - MIRm SINE MIR -3 273 226 1 1397 571 208 0 9 chr4 106539994 106540101 -49090019 + PB1D10 SINE Alu 1 106 -11 1 1397 525 32 0 0 chr4 106540102 106540165 -49089955 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 1 1397 906 169 0 7 chr4 106540165 106540314 -49089806 - B1_Mur2 SINE Alu -1 148 1 1 1397 568 237 8 8 chr4 106540342 106540461 -49089659 + PB1D9 SINE Alu 2 120 0 1 1397 309 281 24 12 chr4 106540465 106540548 -49089572 + RSINE1 SINE B4 51 134 -31 1 1397 234 0 0 0 chr4 106540556 106540582 -49089538 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1397 1089 227 19 48 chr4 106540648 106540916 -49089204 - MTE2a LTR MaLR 0 379 120 1 1397 273 111 89 0 chr4 106540924 106540969 -49089151 + B1_Mus2 SINE Alu 88 136 -11 1 1397 370 270 153 41 chr4 106540979 106541149 -49088971 + B4A SINE B4 89 277 -15 1 1397 317 24 0 23 chr4 106541151 106541194 -49088926 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1397 197 303 91 0 chr4 106541667 106541766 -49088354 - L2 LINE L2 -380 3039 2932 1 1397 456 219 291 6 chr4 106542545 106542710 -49087410 + ID_B1 SINE B4 4 215 -9 1 1397 1209 75 0 0 chr4 106542728 106542875 -49087245 + B1_Mus2 SINE Alu 1 147 0 1 1397 238 203 0 63 chr4 106542875 106542912 -49087208 + A-rich Low_complexity Low_complexity 1 37 0 1 1397 869 192 7 0 chr4 106542912 106543058 -49087062 + B1_Mus1 SINE Alu 2 148 0 1 1397 238 203 0 63 chr4 106543058 106543083 -49087037 + A-rich Low_complexity Low_complexity 38 59 0 1 1397 225 0 0 0 chr4 106543083 106543108 -49087012 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1397 305 181 96 14 chr4 106543178 106543251 -49086869 + MER2 DNA MER2_type 267 345 0 1 1397 843 241 6 36 chr4 106543802 106543944 -49086176 + RSINE1 SINE B4 3 143 -22 1 1397 216 0 0 0 chr4 106543944 106543968 -49086152 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1397 279 0 0 0 chr4 106543968 106543998 -49086122 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1397 843 241 6 36 chr4 106543998 106544022 -49086098 + RSINE1 SINE B4 144 164 -1 1 1397 25 31 0 0 chr4 106544027 106544059 -49086061 + AT_rich Low_complexity Low_complexity 1 32 0 1 1397 1205 54 7 0 chr4 106544106 106544253 -49085867 - B1_Mus1 SINE Alu 0 148 1 1 1397 759 173 0 0 chr4 106544262 106544389 -49085731 + B1_Mur2 SINE Alu 23 149 0 1 1397 1158 54 0 45 chr4 106544489 106544643 -49085477 - B1_Mm SINE Alu 0 147 1 1 1397 740 246 35 40 chr4 106544643 106544842 -49085278 - B3A SINE B2 0 198 1 1 1397 324 313 39 98 chr4 106545553 106545571 -49084549 + B4 SINE B4 79 160 -132 1 1397 704 221 0 7 chr4 106545571 106545712 -49084408 + B1_Mus1 SINE Alu 9 148 0 1 1397 324 313 39 98 chr4 106545712 106545728 -49084392 + B4 SINE B4 161 246 -46 1 1397 273 57 0 0 chr4 106545729 106545764 -49084356 + (GGA)n Simple_repeat Simple_repeat 2 36 0 1 1397 393 200 20 40 chr4 106545764 106545863 -49084257 + ID_B1 SINE B4 122 218 -6 1 1397 437 149 0 13 chr4 106545792 106545867 -49084253 + B1F SINE Alu 74 147 -2 1 1397 842 83 0 189 chr4 106545893 106545942 -49084178 + B1_Mus1 SINE Alu 3 35 -113 1 1397 1258 54 0 0 chr4 106545942 106546089 -49084031 - B1_Mm SINE Alu 0 147 1 1 1397 842 83 0 189 chr4 106546089 106546203 -49083917 + B1_Mus1 SINE Alu 36 135 -13 1 1397 333 0 0 0 chr4 106546205 106546242 -49083878 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1397 188 315 56 11 chr4 106546393 106546483 -49083637 - MIR SINE MIR -84 124 31 1 1397 558 0 0 0 chr4 106546518 106546580 -49083540 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1397 777 164 37 0 chr4 106546613 106546747 -49083373 + B1_Mus1 SINE Alu 1 139 -9 1 1397 225 0 0 0 chr4 106546747 106546772 -49083348 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1397 502 242 55 0 chr4 106546780 106546908 -49083212 - MIR SINE MIR -21 241 107 1 1397 275 343 10 10 chr4 106546922 106547022 -49083098 + PB1D10 SINE Alu 10 109 -8 1 1397 583 191 158 8 chr4 106547047 106547174 -49082946 + B1_Mur1 SINE Alu 2 147 -2 1 1397 1244 183 9 18 chr4 106547185 106547402 -49082718 + B3 SINE B2 1 215 -1 1 1397 938 149 0 13 chr4 106547594 106547744 -49082376 - B1_Mur4 SINE Alu -2 148 1 1 1397 306 0 0 0 chr4 106548026 106548060 -49082060 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1397 391 344 6 53 chr4 106548411 106548580 -49081540 - MLT1N2 LTR MaLR -368 194 34 1 1397 1435 33 65 27 chr4 106548668 106548853 -49081267 - B2_Mm1t SINE B2 0 193 2 1 1397 1136 76 7 0 chr4 106549128 106549273 -49080847 + B1_Mm SINE Alu 2 147 0 1 1397 1684 36 0 0 chr4 106549342 106549534 -49080586 + B2_Mm1a SINE B2 2 193 0 1 1397 1004 92 7 84 chr4 106549554 106549709 -49080411 + B1_Mus2 SINE Alu 4 146 -1 1 1397 183 80 0 0 chr4 106549709 106549734 -49080386 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1 1397 338 348 0 54 chr4 106549817 106549847 -49080273 + ID SINE ID 60 81 -143 1 1397 615 233 31 0 chr4 106549847 106549976 -49080144 + B1_Mur2 SINE Alu 1 133 -16 1 1397 376 255 11 0 chr4 106549965 106550059 -49080061 + PB1D10 SINE Alu 17 111 -6 1 1397 1646 31 0 5 chr4 106550462 106550654 -49079466 - B2_Mm2 SINE B2 -3 192 2 1 1397 372 202 226 9 chr4 106550667 106550782 -49079338 - B1F2 SINE Alu -1 148 9 1 1397 321 89 0 0 chr4 106550795 106550840 -49079280 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1397 370 75 30 0 chr4 106550840 106550907 -49079213 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1397 485 263 18 0 chr4 106550912 106551026 -49079094 - B3A SINE B2 -56 142 27 1 1397 306 0 0 0 chr4 106551044 106551078 -49079042 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1397 324 303 23 76 chr4 106551157 106551213 -49078907 - ID_B1 SINE B4 -18 206 151 1 1397 721 55 508 0 chr4 106551213 106551341 -49078779 + B2_Mm1a SINE B2 1 193 0 1 1397 324 303 23 76 chr4 106551341 106551416 -49078704 - ID_B1 SINE B4 -74 150 82 1 1397 348 315 54 9 chr4 106551896 106552008 -49078112 - B1F SINE Alu -32 117 1 1 1397 22 0 0 0 chr4 106552351 106552373 -49077747 + AT_rich Low_complexity Low_complexity 1 22 0 1 1397 1662 36 0 5 chr4 106552373 106552567 -49077553 - B2_Mm1a SINE B2 0 193 1 1 1397 222 206 58 87 chr4 106552638 106552707 -49077413 + BC1_Mm scRNA scRNA 16 82 -70 1 1397 432 285 88 0 chr4 106552962 106553099 -49077021 + B1F SINE Alu 1 149 0 1 1397 561 156 11 0 chr4 106553327 106553417 -49076703 + B1_Mur1 SINE Alu 53 143 -6 1 1397 327 286 70 21 chr4 106553417 106553560 -49076560 + L1M5 LINE L1 5315 5464 -660 1 1397 1460 236 16 53 chr4 106553713 106554093 -49076027 + ORR1D2 LTR MaLR 1 366 -4 1 1397 458 254 74 0 chr4 106554097 106554219 -49075901 + ID_B1 SINE B4 93 223 -1 1 1397 311 261 64 80 chr4 106554355 106554389 -49075731 + MT2B LTR ERVL 133 255 -346 1 1397 498 187 0 0 chr4 106554389 106554480 -49075640 + B1_Mus1 SINE Alu 11 101 -47 1 1397 900 48 167 0 chr4 106554480 106554606 -49075514 + B1_Mus1 SINE Alu 2 148 0 1 1397 221 143 0 0 chr4 106554616 106554651 -49075469 + B1_Mus2 SINE Alu 87 121 -26 1 1397 335 328 26 9 chr4 106554751 106554825 -49075295 + ID SINE ID 9 84 -140 1 1397 246 323 118 0 chr4 106554825 106554918 -49075202 + PB1D7 SINE Alu 3 106 -14 1 1397 546 113 19 9 chr4 106554929 106555036 -49075084 + (GGAA)n Simple_repeat Simple_repeat 4 111 0 1 1397 717 216 19 19 chr4 106555093 106555249 -49074871 - MTD LTR MaLR -54 365 210 1 1397 458 188 34 6 chr4 106555291 106555394 -49074726 - B1_Mur2 SINE Alu 0 149 19 1 1397 282 246 82 0 chr4 106555393 106555447 -49074673 - MTD LTR MaLR -209 210 152 1 1397 1054 57 108 6 chr4 106555447 106555605 -49074515 + B2_Mm2 SINE B2 2 175 -20 1 1397 717 178 15 7 chr4 106555630 106555766 -49074354 - MTD LTR MaLR -269 150 14 1 1397 183 80 0 0 chr4 106555766 106555791 -49074329 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1 1397 638 165 8 24 chr4 106555815 106555939 -49074181 + B1_Mur2 SINE Alu 28 149 0 2 1397 538 242 33 0 chr4 106556967 106557087 -49073033 + B1F1 SINE Alu 22 145 -4 2 1397 322 261 15 1 chr4 106557094 106557175 -49072945 + RSINE1 SINE B4 2 84 -81 2 1397 362 21 21 0 chr4 106557218 106557265 -49072855 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1397 304 89 0 22 chr4 106557314 106557354 -49072766 + B3 SINE B2 2 41 -175 2 1397 1512 39 33 0 chr4 106557354 106557536 -49072584 + B2_Mm1a SINE B2 2 189 -4 2 1397 865 91 107 1 chr4 106557574 106557726 -49072394 + B2_Mm2 SINE B2 27 191 -25 2 1397 1120 90 14 0 chr4 106557726 106557870 -49072250 + B1_Mus2 SINE Alu 1 146 -1 2 1397 428 280 83 33 chr4 106557870 106557898 -49072222 + B3 SINE B2 192 216 0 2 1397 467 163 16 95 chr4 106557934 106558124 -49071996 + RMER17C LTR ERVK 101 275 -135 2 1397 802 169 7 39 chr4 106558142 106558296 -49071824 + B1_Mur4 SINE Alu 1 149 -1 2 1397 422 368 0 7 chr4 106558667 106558812 -49071308 - ID_B1 SINE B4 0 224 81 2 1397 261 355 71 0 chr4 106559307 106559490 -49070630 - MLT1L LTR MaLR -130 480 285 2 1397 473 107 13 0 chr4 106559639 106559714 -49070406 - B1_Mus2 SINE Alu 0 147 72 2 1397 976 238 19 14 chr4 106559731 106559940 -49070180 - B3 SINE B2 -3 213 4 2 1397 1113 149 70 33 chr4 106559978 106560193 -49069927 + URR1B DNA MER1_type 1 223 -2 2 1397 1116 67 0 0 chr4 106560472 106560607 -49069513 + B1_Mus1 SINE Alu 5 139 -9 2 1397 1324 58 34 17 chr4 106561063 106561240 -49068880 - B2_Mm2 SINE B2 -15 180 1 2 1397 1129 82 0 14 chr4 106561269 106561417 -49068703 - B1_Mm SINE Alu -1 146 1 2 174 842 268 34 0 chr4 106561446 106561655 -49068465 + B3 SINE B2 1 216 0 2 1398 972 137 14 0 chr4 106561765 106561911 -49068209 - B1_Mur4 SINE Alu 0 150 3 2 1398 306 323 22 70 chr4 106562141 106562336 -49067784 - LTR16A LTR ERVL -88 368 175 2 1398 283 189 36 108 chr4 106562587 106562670 -49067450 - PB1D10 SINE Alu 0 117 41 2 1398 351 96 0 0 chr4 106562795 106562847 -49067273 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 2 1398 810 201 0 0 chr4 106562847 106562981 -49067139 - B1_Mur3 SINE Alu -13 136 3 2 1398 701 163 102 15 chr4 106563009 106563146 -49066974 - B1_Mur3 SINE Alu 0 149 1 2 1398 279 0 0 0 chr4 106563175 106563206 -49066914 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 2 1398 298 148 0 53 chr4 106563233 106563290 -49066830 - B2_Mm2 SINE B2 -94 101 48 2 1398 925 136 6 13 chr4 106563345 106563492 -49066628 - B2_Mm1t SINE B2 -7 186 41 2 1398 611 163 203 0 chr4 106563492 106563615 -49066505 + B1_Mus1 SINE Alu 1 148 0 2 1398 1121 36 58 0 chr4 106563707 106563845 -49066275 - B1_Mm SINE Alu -1 146 1 2 1398 833 244 53 48 chr4 106563877 106564084 -49066036 + B3 SINE B2 2 209 -7 2 1398 784 212 13 27 chr4 106564112 106564247 -49065873 + B1_Mur1 SINE Alu 2 136 -13 2 1398 279 0 0 0 chr4 106564247 106564278 -49065842 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1398 784 212 13 27 chr4 106564278 106564292 -49065828 + B1_Mur1 SINE Alu 137 149 0 2 1398 891 227 37 42 chr4 106564387 106564433 -49065687 - B3 SINE B2 0 216 179 2 1398 3402 33 5 8 chr4 106564433 106564830 -49065290 - MTA_Mm LTR MaLR 0 396 1 2 1398 891 227 37 42 chr4 106564830 106564999 -49065121 - B3 SINE B2 -38 178 2 2 1398 508 297 39 17 chr4 106565075 106565253 -49064867 - B3A SINE B2 0 198 17 2 1398 1127 68 0 45 chr4 106565347 106565501 -49064619 - B1_Mus2 SINE Alu 0 147 1 2 1398 3340 182 131 25 chr4 106565502 106566272 -49063848 - RMER19B LTR ERVK -50 852 1 2 1398 381 103 330 18 chr4 106566272 106566351 -49063769 - B2_Mm2 SINE B2 -36 159 47 2 1398 1136 141 28 0 chr4 106566406 106566583 -49063537 - B2_Mm1t SINE B2 -10 183 2 2 1398 490 188 0 47 chr4 106566583 106566689 -49063431 - RMER19B LTR ERVK -801 101 1 2 1398 316 236 0 154 chr4 106566714 106566767 -49063353 + RCHARR1 DNA MER1_type 882 934 -40 2 1398 1143 84 0 0 chr4 106566767 106566910 -49063210 + B1_Mus1 SINE Alu 1 143 -5 2 1398 316 236 0 154 chr4 106566910 106566966 -49063154 + RCHARR1 DNA MER1_type 935 974 0 2 1398 772 244 43 14 chr4 106567290 106567498 -49062622 - B3 SINE B2 -1 215 2 2 1398 1546 28 45 0 chr4 106567601 106567779 -49062341 + B2_Mm1a SINE B2 1 186 -7 2 1398 1393 65 35 56 chr4 106567806 106567827 -49062293 - B2_Mm2 SINE B2 0 195 182 2 1398 876 123 0 0 chr4 106567827 106567973 -49062147 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 2 1398 1393 65 35 56 chr4 106567973 106568148 -49061972 - B2_Mm2 SINE B2 -14 181 3 2 1398 619 142 0 16 chr4 106569198 106569320 -49060800 + CT-rich Low_complexity Low_complexity 3 122 0 2 1398 210 114 45 0 chr4 106569323 106569367 -49060753 + T-rich Low_complexity Low_complexity 2 47 0 2 1398 772 75 0 0 chr4 106569369 106569476 -49060644 - B1_Mus2 SINE Alu 0 147 41 2 1398 247 208 62 49 chr4 106569412 106569493 -49060627 - RLTR25B LTR ERVK -519 509 428 2 1398 273 198 23 11 chr4 106569493 106569580 -49060540 + CT-rich Low_complexity Low_complexity 4 91 0 2 1398 919 149 0 57 chr4 106569601 106569758 -49060362 - B1_Mus1 SINE Alu 0 148 1 2 1398 581 275 12 36 chr4 106569788 106569954 -49060166 - RSINE1 SINE B4 -2 163 2 2 1398 196 338 12 12 chr4 106570112 106570193 -49059927 + MIRb SINE MIR 121 201 -67 2 1398 321 26 0 0 chr4 106570973 106571011 -49059109 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1398 190 106 21 21 chr4 106571011 106571059 -49059061 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1398 192 241 64 75 chr4 106571701 106571795 -49058325 - L2 LINE L2 -2821 598 506 2 1398 542 272 33 33 chr4 106572036 106572188 -49057932 - RSINE1 SINE B4 0 165 14 2 1398 479 291 69 32 chr4 106572200 106572388 -49057732 - ID_B1 SINE B4 -1 223 29 2 1398 831 131 0 0 chr4 106572449 106572586 -49057534 + (TCC)n Simple_repeat Simple_repeat 3 139 0 2 1398 1191 111 33 22 chr4 106572697 106572881 -49057239 - B2_Mm2 SINE B2 -9 186 1 2 1398 861 152 38 0 chr4 106573193 106573325 -49056795 - B1_Mus2 SINE Alu -10 137 1 2 1398 192 361 10 10 chr4 106573588 106573686 -49056434 + L2b LINE L2 3250 3347 -28 2 1398 1109 97 0 0 chr4 106574196 106574340 -49055780 + B1_Mus1 SINE Alu 4 147 -1 2 1398 208 171 24 35 chr4 106574490 106574575 -49055545 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1398 258 116 0 0 chr4 106574588 106574631 -49055489 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1398 374 270 61 0 chr4 106574640 106574755 -49055365 - B1F SINE Alu -19 130 9 2 1398 442 167 78 0 chr4 106575214 106575304 -49054816 + B1F SINE Alu 1 97 -52 2 1398 22 0 0 0 chr4 106576038 106576060 -49054060 + AT_rich Low_complexity Low_complexity 1 22 0 2 1398 901 129 0 7 chr4 106576071 106576211 -49053909 + B1_Mur4 SINE Alu 10 148 -2 2 1398 312 27 0 0 chr4 106576219 106576256 -49053864 + (CCA)n Simple_repeat Simple_repeat 1 37 0 2 1398 827 190 201 0 chr4 106576300 106576479 -49053641 + B3 SINE B2 2 216 0 2 1398 396 0 0 0 chr4 106576771 106576815 -49053305 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1398 436 262 73 8 chr4 106576815 106576938 -49053182 - ID_B1 SINE B4 -14 210 80 2 1398 211 254 79 0 chr4 106576991 106577054 -49053066 - PB1D10 SINE Alu -44 73 6 2 1398 449 302 95 103 chr4 106577103 106577193 -49052927 - L1MB3 LINE L1 -357 5826 5744 2 1398 1348 108 0 58 chr4 106577193 106577400 -49052720 - B2_Mm2 SINE B2 0 195 1 2 1398 449 302 95 103 chr4 106577400 106577689 -49052431 - L1MB3 LINE L1 -440 5743 5450 2 1398 316 319 16 25 chr4 106578269 106578391 -49051729 - L2a LINE L2 -86 3340 3220 2 1398 549 80 0 0 chr4 106578476 106578551 -49051569 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1398 1329 83 15 59 chr4 106578932 106579136 -49050984 - B2_Mm2 SINE B2 0 195 1 2 1398 424 269 58 36 chr4 106579147 106579286 -49050834 - ID_B1 SINE B4 0 224 83 2 1398 195 254 0 0 chr4 106579318 106579381 -49050739 + GA-rich Low_complexity Low_complexity 2 64 0 2 1398 835 179 14 14 chr4 106579596 106579743 -49050377 - B1_Mus1 SINE Alu 0 148 2 2 1398 359 331 16 8 chr4 106579795 106579920 -49050200 - B3A SINE B2 -72 126 1 2 1398 216 0 0 0 chr4 106579930 106579954 -49050166 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1398 209 330 68 29 chr4 106580946 106581049 -49049071 + MIRm SINE MIR 154 260 -16 2 1398 217 309 147 57 chr4 106581320 106581619 -49048501 - L2c LINE L2 -38 3349 3024 2 1398 210 71 0 0 chr4 106584105 106584133 -49045987 + (CGG)n Simple_repeat Simple_repeat 3 30 0 2 1398 28 48 0 0 chr4 106584148 106584190 -49045930 + GC_rich Low_complexity Low_complexity 1 42 0 2 1398 23 33 0 0 chr4 106584416 106584446 -49045674 + GC_rich Low_complexity Low_complexity 1 30 0 2 1398 198 0 0 0 chr4 106584981 106585003 -49045117 + (GGCTG)n Simple_repeat Simple_repeat 5 26 0 2 1398 467 17 17 0 chr4 106585435 106585495 -49044625 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1398 463 278 58 26 chr4 106589082 106589237 -49040883 - RSINE1 SINE B4 -2 163 4 2 1398 452 257 92 0 chr4 106589281 106589390 -49040730 - B1F SINE Alu -30 119 1 2 1398 327 200 0 0 chr4 106590421 106590481 -49039639 - ID4 SINE ID -10 73 14 2 1398 527 249 57 36 chr4 106590582 106590594 -49039526 - B3A SINE B2 0 198 189 2 1398 528 220 8 25 chr4 106590594 106590715 -49039405 - PB1D9 SINE Alu -1 119 1 2 1398 527 249 57 36 chr4 106590715 106590894 -49039226 - B3A SINE B2 -10 188 3 2 1398 591 184 14 7 chr4 106591217 106591359 -49038761 + CT-rich Low_complexity Low_complexity 2 144 0 2 1398 777 145 15 8 chr4 106591366 106591498 -49038622 - B1_Mur2 SINE Alu 0 149 17 2 1398 465 158 36 82 chr4 106591411 106591521 -49038599 - MT2B LTR ERVL -343 258 154 3 1398 452 18 0 17 chr4 106591539 106591597 -49038523 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1398 306 274 24 71 chr4 106592117 106592243 -49037877 - MIRb SINE MIR -38 230 111 3 1398 185 146 21 0 chr4 106594929 106594977 -49035143 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1398 315 320 16 31 chr4 106596378 106596507 -49033613 + MIRb SINE MIR 80 206 -62 3 1398 405 0 0 0 chr4 106596550 106596595 -49033525 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1398 360 64 0 0 chr4 106597511 106597558 -49032562 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1398 1479 73 10 5 chr4 106597982 106598176 -49031944 - B2_Mm2 SINE B2 0 195 1 3 1398 271 153 143 65 chr4 106598766 106598777 -49031343 - B1F SINE Alu 0 149 68 3 1398 281 185 123 0 chr4 106598777 106598842 -49031278 - ID_B1 SINE B4 -6 218 146 3 1398 207 217 0 0 chr4 106598963 106599009 -49031111 - MIR SINE MIR -63 145 100 3 1398 189 0 0 0 chr4 106599313 106599334 -49030786 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 3 1398 489 34 0 0 chr4 106599941 106600000 -49030120 + (TGG)n Simple_repeat Simple_repeat 1 59 0 3 1398 408 186 11 34 chr4 106600002 106600091 -49030029 - B1_Mur1 SINE Alu -21 128 42 3 1398 194 316 114 66 chr4 106600185 106600351 -49029769 - MIRb SINE MIR 0 268 95 3 1398 695 293 53 5 chr4 106600387 106600596 -49029524 - ID_B1 SINE B4 -5 219 1 3 1398 478 263 53 0 chr4 106600671 106600804 -49029316 + B1F1 SINE Alu 10 149 0 3 1398 222 298 35 0 chr4 106601239 106601296 -49028824 - ID4_ SINE ID -6 77 19 3 1398 289 273 0 33 chr4 106601329 106601420 -49028700 - B1F SINE Alu 0 149 62 3 1398 264 91 0 0 chr4 106602090 106602134 -49027986 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1398 261 313 98 8 chr4 106602168 106602300 -49027820 - MIRc SINE MIR -99 169 26 3 1398 514 240 30 44 chr4 106603302 106603437 -49026683 - B1_Mur1 SINE Alu -15 134 2 3 1398 1100 201 0 78 chr4 106603463 106603695 -49026425 - B3 SINE B2 0 216 3 3 1398 429 232 11 0 chr4 106603708 106603803 -49026317 - PB1D10 SINE Alu -7 110 15 3 1398 1046 117 7 0 chr4 106604509 106604654 -49025466 - B1_Mus1 SINE Alu 0 148 3 3 1398 392 297 15 30 chr4 106604797 106604929 -49025191 - RSINE1 SINE B4 -31 134 5 3 1398 262 316 42 42 chr4 106606144 106606263 -49023857 + L2b LINE L2 3015 3133 -242 3 1398 207 0 0 0 chr4 106607575 106607598 -49022522 + (AGCTG)n Simple_repeat Simple_repeat 5 27 0 3 1398 21 0 0 0 chr4 106609131 106609152 -49020968 + GC_rich Low_complexity Low_complexity 1 21 0 3 1398 736 167 282 12 chr4 106609918 106610088 -49020032 - B3 SINE B2 0 216 1 3 1398 665 229 58 29 chr4 106610100 106610271 -49019849 - ID_B1 SINE B4 -9 215 40 3 1398 350 149 20 41 chr4 106612205 106612303 -49017817 + CT-rich Low_complexity Low_complexity 1 96 0 3 1398 234 0 0 0 chr4 106612858 106612884 -49017236 + (GCTG)n Simple_repeat Simple_repeat 1 26 0 3 1398 864 158 0 0 chr4 106612885 106613037 -49017083 + CT-rich Low_complexity Low_complexity 2 153 0 3 1398 1059 64 43 0 chr4 106613038 106613178 -49016942 - B1_Mus2 SINE Alu 0 147 2 3 1398 213 39 0 0 chr4 106613907 106613933 -49016187 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1398 210 37 0 0 chr4 106615650 106615677 -49014443 + (CTG)n Simple_repeat Simple_repeat 2 28 0 3 1398 263 247 171 51 chr4 106616161 106616319 -49013801 - MIRc SINE MIR -4 264 88 3 1398 195 42 0 0 chr4 106616809 106616833 -49013287 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 1398 275 239 101 11 chr4 106617532 106617621 -49012499 - Charlie15a DNA MER1_type -14 210 114 3 1398 295 258 124 0 chr4 106617728 106617817 -49012303 + BC1_Mm scRNA scRNA 2 101 -51 3 1398 381 327 71 32 chr4 106618389 106618544 -49011576 + B3 SINE B2 10 170 -46 3 1398 373 307 94 22 chr4 106619599 106619779 -49010341 - MIR SINE MIR -37 225 33 3 1398 225 244 0 0 chr4 106620858 106620903 -49009217 + MIR3 SINE MIR 112 156 -52 3 1398 694 250 37 33 chr4 106621742 106621957 -49008163 - B3 SINE B2 0 216 1 3 1398 245 192 0 19 chr4 106622984 106623037 -49007083 - ID_B1 SINE B4 -1 223 172 3 1398 242 172 45 45 chr4 106623037 106623051 -49007069 - B1F SINE Alu 0 149 83 3 1398 273 257 0 94 chr4 106624170 106624258 -49005862 - MIR SINE MIR -59 149 70 3 1398 236 245 49 26 chr4 106624367 106624450 -49005670 - MIR SINE MIR -108 160 68 3 1398 181 265 41 0 chr4 106624515 106624564 -49005556 - L2a LINE L2 -58 3368 3318 3 1398 674 251 124 14 chr4 106624722 106624932 -49005188 + B4A SINE B4 1 233 -59 3 1398 3463 16 0 0 chr4 106625105 106625489 -49004631 - L1Md_A LINE L1 0 6582 6199 3 1398 189 0 0 0 chr4 106626098 106626119 -49004001 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1398 217 277 0 0 chr4 106627274 106627321 -49002799 + L2a LINE L2 3374 3420 -6 3 1398 180 125 0 0 chr4 106627390 106627422 -49002698 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1398 860 263 75 89 chr4 106629422 106629714 -49000406 - B4 SINE B4 0 292 5 3 1398 504 117 0 0 chr4 106630368 106630445 -48999675 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1398 221 211 0 17 chr4 106630461 106630519 -48999601 + CT-rich Low_complexity Low_complexity 2 58 0 3 1398 1161 95 0 0 chr4 106630520 106630668 -48999452 - B1_Mus1 SINE Alu 0 148 1 3 1398 213 244 0 0 chr4 106631635 106631676 -48998444 - PB1D10 SINE Alu -19 98 58 3 1398 614 293 27 16 chr4 106632187 106632371 -48997749 + B3A SINE B2 10 195 -3 3 1398 323 221 298 9 chr4 106633688 106633802 -48996318 - B1F SINE Alu -2 147 1 3 1398 760 264 150 13 chr4 106634681 106634981 -48995139 - MLT1C LTR MaLR -82 385 45 3 1398 1907 181 54 28 chr4 106638279 106638671 -48991449 - MTC LTR MaLR 0 421 20 3 1398 504 131 69 20 chr4 106638784 106638885 -48991235 - B1_Mur2 SINE Alu -8 141 36 3 1398 1031 118 14 0 chr4 106639984 106640128 -48989992 - B1_Mur4 SINE Alu 0 150 5 3 1398 362 31 62 0 chr4 106640167 106640231 -48989889 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1398 358 282 165 71 chr4 106640700 106640967 -48989153 - B4 SINE B4 0 292 1 3 1398 418 277 8 67 chr4 106641040 106641160 -48988960 - PB1 SINE Alu -14 113 1 3 1398 195 114 0 0 chr4 106641219 106641254 -48988866 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 3 1398 659 118 233 8 chr4 106641254 106641374 -48988746 - B1_Mm SINE Alu 0 147 1 3 1398 417 200 11 45 chr4 106642362 106642451 -48987669 + B1F SINE Alu 4 89 -60 3 1398 253 264 151 0 chr4 106642470 106642576 -48987544 + BC1_Mm scRNA scRNA 6 127 -25 3 1398 240 35 0 0 chr4 106642646 106642675 -48987445 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1398 862 70 127 37 chr4 106642675 106642800 -48987320 - B1_Mus1 SINE Alu -7 141 2 3 1398 333 0 0 0 chr4 106643798 106643835 -48986285 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1398 273 373 14 50 chr4 106644923 106645064 -48985056 - MIR SINE MIR -86 176 41 3 1398 181 270 15 73 chr4 106645814 106645882 -48984238 - MIR3 SINE MIR -32 176 113 3 1398 209 349 0 0 chr4 106646137 106646203 -48983917 + MIRc SINE MIR 58 123 -145 3 1398 1118 166 55 10 chr4 106646948 106647149 -48982971 - B3 SINE B2 -6 210 1 3 1398 357 228 109 39 chr4 106648902 106649030 -48981090 - B1F SINE Alu -3 146 10 3 1398 270 0 0 0 chr4 106650881 106650911 -48979209 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 3 1398 426 223 7 71 chr4 106652509 106652648 -48977472 - PB1D9 SINE Alu -21 128 2 3 1398 245 363 99 15 chr4 106652745 106652960 -48977160 + MIRb SINE MIR 34 260 -2 3 1398 391 211 44 41 chr4 106653149 106653289 -48976831 + B1_Mm SINE Alu 15 149 0 3 1398 405 0 0 0 chr4 106654670 106654715 -48975405 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 3 1398 851 130 45 19 chr4 106654715 106654872 -48975248 - B2_Mm2 SINE B2 -34 161 1 3 1398 439 261 45 53 chr4 106655971 106656253 -48973867 + RMER17C LTR ERVK 49 410 0 3 1398 316 147 13 13 chr4 106656996 106657072 -48973048 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1398 291 301 120 35 chr4 106657399 106657599 -48972521 - L1M5 LINE L1 -315 5809 5593 3 1398 1144 55 0 58 chr4 106659879 106660034 -48970086 - B1_Mm SINE Alu 0 147 2 3 1398 216 130 0 0 chr4 106660073 106660119 -48970001 + (TTGG)n Simple_repeat Simple_repeat 1 46 0 3 1398 257 343 172 14 chr4 106660119 106660264 -48969856 - B4A SINE B4 -114 178 11 3 1398 297 0 0 0 chr4 106662830 106662863 -48967257 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1398 713 215 21 12 chr4 106662948 106663141 -48966979 - B3 SINE B2 0 195 1 3 1398 224 288 30 0 chr4 106663154 106663220 -48966900 + PB1D9 SINE Alu 53 120 0 3 1398 192 83 62 0 chr4 106663399 106663447 -48966673 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1398 204 111 0 0 chr4 106663694 106663730 -48966390 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1398 348 290 83 9 chr4 106664600 106664708 -48965412 + PB1D10 SINE Alu 1 116 -1 3 1398 230 275 99 18 chr4 106667878 106667964 -48962156 - B1F SINE Alu -1 148 31 3 1398 858 93 36 0 chr4 106668129 106668268 -48961852 + URR1A DNA MER1_type 81 224 -2 4 1398 25 31 0 0 chr4 106668728 106668760 -48961360 + AT_rich Low_complexity Low_complexity 1 32 0 4 1398 378 0 0 0 chr4 106669055 106669097 -48961023 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1398 270 0 0 0 chr4 106669257 106669287 -48960833 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1398 294 50 0 0 chr4 106671326 106671366 -48958754 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1398 424 284 82 35 chr4 106674024 106674237 -48955883 + MIRb SINE MIR 6 225 -37 4 1398 383 211 168 42 chr4 106676014 106676133 -48953987 + PB1 SINE Alu 15 148 -1 4 1398 282 138 0 0 chr4 106677279 106677337 -48952783 + (TTTTTG)n Simple_repeat Simple_repeat 1 58 0 4 1398 2807 89 47 3 chr4 106678047 106678430 -48951690 - MTB LTR MaLR 0 400 1 4 1398 21 0 0 0 chr4 106679151 106679172 -48950948 + AT_rich Low_complexity Low_complexity 1 21 0 4 1398 574 258 23 0 chr4 106679181 106679309 -48950811 - RSINE1 SINE B4 -21 144 14 4 1398 300 260 14 0 chr4 106680820 106680893 -48949227 + B1F SINE Alu 49 122 -27 4 1398 1677 26 16 0 chr4 106683712 106683902 -48946218 + B2_Mm1t SINE B2 1 193 0 4 1398 978 245 5 5 chr4 106684276 106684485 -48945635 - B3 SINE B2 0 216 8 4 1398 259 336 103 0 chr4 106685928 106686044 -48944076 + MIR3 SINE MIR 66 193 -15 4 1398 190 114 0 54 chr4 106686759 106686796 -48943324 + L4 LINE RTE 1358 1392 -637 4 1398 249 369 0 63 chr4 106689793 106689935 -48940185 + MIRb SINE MIR 104 236 -32 4 1399 384 291 70 8 chr4 106693112 106693240 -48936880 - RSINE1 SINE B4 -28 137 2 4 1399 221 274 186 23 chr4 106693424 106693510 -48936610 - B1F1 SINE Alu -49 100 1 4 1399 374 266 108 46 chr4 106693724 106693854 -48936266 - MER58A DNA MER1_type -76 148 11 4 1399 263 244 77 129 chr4 106693942 106694097 -48936023 + MT2B LTR ERVL 132 278 -323 4 1399 628 132 73 16 chr4 106694001 106694124 -48935996 + B1_Mus2 SINE Alu 17 146 -1 4 1399 270 0 0 0 chr4 106696488 106696518 -48933602 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1399 228 135 0 0 chr4 106697584 106697621 -48932499 + (CTG)n Simple_repeat Simple_repeat 3 39 0 4 1399 208 304 13 0 chr4 106699123 106699202 -48930918 + MIRc SINE MIR 64 143 -125 4 1399 24 32 0 0 chr4 106699919 106699950 -48930170 + GC_rich Low_complexity Low_complexity 1 31 0 4 1399 552 184 0 46 chr4 106704725 106704833 -48925287 + PB1D9 SINE Alu 5 107 -13 4 1399 230 188 84 28 chr4 106705075 106705146 -48924974 + ID4_ SINE ID 1 75 -8 4 1399 519 211 121 8 chr4 106705111 106705235 -48924885 + ID_B1 SINE B4 87 224 0 4 1399 1219 79 34 0 chr4 106705364 106705541 -48924579 + B2_Mm2 SINE B2 13 195 0 4 1399 1070 240 158 52 chr4 106705811 106705879 -48924241 - ORR1C2 LTR MaLR 0 384 320 4 1399 1635 32 16 0 chr4 106705879 106706068 -48924052 + B2_Mm1a SINE B2 2 193 0 4 1399 1070 240 158 52 chr4 106706068 106706346 -48923774 - ORR1C2 LTR MaLR -65 319 1 4 1399 201 300 34 76 chr4 106707670 106707789 -48922331 + MIR3 SINE MIR 45 158 -50 4 1399 314 301 39 0 chr4 106709803 106709906 -48920214 - MIRb SINE MIR -104 164 58 4 1399 30 69 0 0 chr4 106709985 106710043 -48920077 + AT_rich Low_complexity Low_complexity 1 58 0 4 1399 770 188 0 0 chr4 106714659 106714787 -48915333 + B3 SINE B2 1 128 -88 4 1399 235 286 32 104 chr4 106714889 106715014 -48915106 + PB1D9 SINE Alu 5 120 0 4 1399 813 79 0 0 chr4 106715377 106715504 -48914616 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1399 3365 40 2 8 chr4 106715620 106716018 -48914102 - MTA_Mm LTR MaLR 0 396 1 4 1399 566 269 40 11 chr4 106716242 106716419 -48913701 + B4A SINE B4 83 264 -28 4 1399 202 283 0 0 chr4 106716437 106716490 -48913630 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1399 400 271 0 0 chr4 106716528 106716613 -48913507 + PB1 SINE Alu 13 97 -30 4 1399 375 240 178 30 chr4 106716654 106716845 -48913275 + L1M4 LINE L1 5200 5439 -739 4 1399 644 165 9 9 chr4 106716845 106716955 -48913165 + PB1D9 SINE Alu 2 111 -9 4 1399 357 24 0 0 chr4 106716955 106716997 -48913123 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1399 375 315 112 51 chr4 106716997 106717151 -48912969 + L1M4 LINE L1 5440 5583 -595 4 1399 358 236 88 35 chr4 106717530 106717644 -48912476 + PB1D9 SINE Alu 1 120 0 4 1399 232 259 35 9 chr4 106717888 106718001 -48912119 + (CCTG)n Simple_repeat Simple_repeat 4 119 0 4 1399 411 274 134 60 chr4 106719518 106719735 -48910385 + B4A SINE B4 1 233 -59 4 1399 303 276 26 0 chr4 106721105 106721181 -48908939 + L1MEg LINE L1 1842 1919 -4165 4 1399 1010 110 117 39 chr4 106722666 106722846 -48907274 - B2_Mm2 SINE B2 -1 194 1 4 1399 559 104 31 0 chr4 106722846 106722942 -48907178 + (TTTCC)n Simple_repeat Simple_repeat 3 101 0 4 1399 275 210 111 0 chr4 106724849 106724930 -48905190 + MIRm SINE MIR 156 245 -31 4 1399 1209 48 14 0 chr4 106725069 106725214 -48904906 + B1_Mm SINE Alu 1 147 0 4 1399 248 299 130 9 chr4 106726107 106726215 -48903905 + L2a LINE L2 3306 3426 0 4 1399 380 322 26 0 chr4 106726765 106726880 -48903240 - ID_B1 SINE B4 -7 217 100 4 1399 1312 101 16 11 chr4 106727495 106727685 -48902435 - B2_Mm2 SINE B2 -4 191 1 4 1399 507 214 255 0 chr4 106727808 106727969 -48902151 + B3 SINE B2 13 214 -2 4 1399 259 242 69 29 chr4 106728124 106728226 -48901894 + PB1D10 SINE Alu 12 117 0 4 1399 236 154 19 0 chr4 106728246 106728298 -48901822 + G-rich Low_complexity Low_complexity 4 56 0 4 1399 238 298 107 0 chr4 106730593 106730677 -48899443 - MIR3 SINE MIR -34 174 82 4 1399 299 299 52 0 chr4 106731832 106731909 -48898211 - ID4_ SINE ID -1 82 2 4 1399 309 269 184 13 chr4 106731946 106731993 -48898127 - MER5A DNA MER1_type -4 185 137 4 1399 228 35 0 0 chr4 106731993 106732022 -48898098 + (ACTG)n Simple_repeat Simple_repeat 1 29 0 4 1399 309 269 184 13 chr4 106732022 106732132 -48897988 - MER5A DNA MER1_type -53 136 3 4 1399 1536 58 16 0 chr4 106734018 106734208 -48895912 + B2_Mm2 SINE B2 3 195 0 4 1399 270 164 0 0 chr4 106734210 106734265 -48895855 + GA-rich Low_complexity Low_complexity 2 56 0 4 1399 30 0 0 0 chr4 106734289 106734319 -48895801 + AT_rich Low_complexity Low_complexity 1 30 0 4 1399 180 0 0 0 chr4 106734404 106734424 -48895696 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1399 350 211 34 9 chr4 106735099 106735191 -48894929 + PB1D9 SINE Alu 33 119 -31 4 1399 306 304 33 46 chr4 106735208 106735360 -48894760 - MER20 DNA MER1_type -33 186 37 4 1399 210 217 65 0 chr4 106736775 106736821 -48893299 + B1F1 SINE Alu 49 97 -52 4 1399 181 443 33 0 chr4 106737838 106737960 -48892160 - MIRb SINE MIR -140 128 3 4 1399 958 141 7 0 chr4 106738082 106738224 -48891896 - B1_Mur4 SINE Alu -5 145 3 4 1399 476 96 0 52 chr4 106738644 106738721 -48891399 - B1_Mus2 SINE Alu -15 132 60 4 1399 197 293 69 0 chr4 106740335 106740393 -48889727 - L2b LINE L2 -222 3153 3092 4 1399 218 279 43 14 chr4 106741577 106741646 -48888474 + MIR SINE MIR 73 143 -119 4 1399 362 318 14 85 chr4 106741683 106741824 -48888296 - L2c LINE L2 0 3387 3257 4 1399 808 135 37 8 chr4 106742007 106742141 -48887979 - B1_Mus2 SINE Alu -1 146 9 4 1399 683 234 26 6 chr4 106742242 106742398 -48887722 + ID_B1 SINE B4 77 233 -59 4 1399 267 321 12 0 chr4 106742995 106743079 -48887041 + MIR3 SINE MIR 117 201 -7 4 1399 236 250 291 27 chr4 106743800 106743984 -48886136 - MIR SINE MIR -1 261 29 4 1399 1384 76 43 0 chr4 106744078 106744263 -48885857 + B2_Mm2 SINE B2 3 195 0 4 1399 322 269 39 0 chr4 106744269 106744347 -48885773 + ID_B1 SINE B4 143 223 -1 4 1399 472 212 84 3 chr4 106745389 106745517 -48884603 - PB1D10 SINE Alu -8 141 8 4 1399 262 289 47 24 chr4 106745466 106745551 -48884569 - B4A SINE B4 -148 144 58 4 1399 874 228 20 49 chr4 106745666 106745869 -48884251 - B3A SINE B2 0 198 2 4 1399 193 280 173 0 chr4 106745870 106745945 -48884175 + MIRb SINE MIR 173 260 -8 4 1399 1502 53 16 26 chr4 106746574 106746766 -48883354 - B2_Mm2 SINE B2 -4 191 2 4 1399 858 192 52 31 chr4 106747725 106747918 -48882202 + RMER30 DNA MER1_type 5 201 -1 4 1399 269 207 102 87 chr4 106748454 106748581 -48881539 - MIRb SINE MIR -22 246 118 4 1399 1146 89 7 0 chr4 106748714 106748860 -48881260 - B1_Mus1 SINE Alu 0 148 2 4 1399 509 245 0 10 chr4 106748898 106749001 -48881119 - B3 SINE B2 -114 102 1 4 1399 390 318 65 50 chr4 106749726 106750056 -48880064 + MER102b DNA MER1_type 29 340 -1 4 1399 241 363 93 55 chr4 106750754 106751066 -48879054 + L1ME4a LINE L1 5587 5910 -214 4 1399 315 237 222 0 chr4 106751088 106751223 -48878897 + L1ME4a LINE L1 5960 6124 0 4 1399 234 0 0 0 chr4 106751451 106751477 -48878643 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1399 264 328 22 90 chr4 106752477 106752611 -48877509 - MIR SINE MIR -62 200 76 4 1399 682 150 0 0 chr4 106752701 106752814 -48877306 + B1_Mus1 SINE Alu 1 113 -35 4 1399 234 282 46 23 chr4 106752747 106752825 -48877295 + RLTR25A LTR ERVK 522 601 -502 4 1399 453 19 0 0 chr4 106752825 106752879 -48877241 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1399 192 77 0 0 chr4 106752910 106752936 -48877184 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 4 1399 921 266 136 4 chr4 106754857 106755129 -48874991 - MTD LTR MaLR 0 419 112 4 1399 714 192 0 71 chr4 106755133 106755273 -48874847 + B1_Mur1 SINE Alu 6 135 -14 5 1399 315 0 0 0 chr4 106755273 106755308 -48874812 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1399 689 114 9 0 chr4 106755308 106755422 -48874698 + (GA)n Simple_repeat Simple_repeat 2 116 0 5 1399 241 310 28 0 chr4 106755437 106755508 -48874612 - MIR SINE MIR -74 188 116 5 1399 304 283 11 11 chr4 106756963 106757056 -48873064 + MIR SINE MIR 18 110 -98 5 1399 254 209 90 34 chr4 106757574 106757663 -48872457 + MIR SINE MIR 19 112 -96 5 1399 200 258 146 0 chr4 106757911 106758000 -48872120 - MIR3 SINE MIR -18 190 89 5 1399 225 0 0 0 chr4 106758043 106758068 -48872052 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1399 250 238 0 113 chr4 106759890 106759961 -48870159 - ID4_ SINE ID 0 83 21 5 1399 534 280 0 0 chr4 106760097 106760215 -48869905 + RSINE1 SINE B4 1 118 -47 5 1399 1044 116 0 39 chr4 106760430 106760583 -48869537 + B1_Mus1 SINE Alu 2 148 0 5 1399 498 260 58 7 chr4 106760625 106760773 -48869347 + ID_B1 SINE B4 70 221 -3 5 1399 240 307 108 50 chr4 106761088 106761208 -48868912 + MIRb SINE MIR 38 164 -104 5 1399 327 286 119 93 chr4 106761427 106761620 -48868500 - ORR1E LTR MaLR -161 198 1 5 1399 407 186 58 0 chr4 106761728 106761814 -48868306 + PB1 SINE Alu 23 113 -14 5 1399 300 289 97 14 chr4 106761845 106761989 -48868131 - Charlie19a DNA Charlie -24 362 207 5 1399 444 37 0 0 chr4 106762924 106762978 -48867142 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 5 1399 576 159 29 1 chr4 106762979 106763099 -48867021 - B1_Mur1 SINE Alu -10 139 18 5 1399 347 277 36 51 chr4 106763099 106763116 -48867004 - ID_B1 SINE B4 -10 214 80 5 1399 595 238 8 0 chr4 106763131 106763257 -48866863 + B1_Mur1 SINE Alu 1 127 -22 5 1399 534 112 0 0 chr4 106763257 106763337 -48866783 + B1F1 SINE Alu 70 149 0 5 1399 282 265 26 60 chr4 106763346 106763498 -48866622 + B3A SINE B2 8 216 0 5 1399 233 216 110 0 chr4 106764041 106764123 -48865997 + MIR3 SINE MIR 100 191 -17 5 1399 320 285 56 49 chr4 106764474 106764618 -48865502 + B4A SINE B4 12 156 -136 5 1399 238 337 24 0 chr4 106765195 106765278 -48864842 - MIR SINE MIR -59 149 65 5 1399 404 340 42 23 chr4 106767538 106767588 -48862532 + MLT1A0 LTR MaLR 127 181 -184 5 1399 420 111 0 0 chr4 106767588 106767651 -48862469 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1399 404 340 42 23 chr4 106767651 106767814 -48862306 + MLT1A0 LTR MaLR 182 344 -21 5 1399 592 126 214 14 chr4 106767973 106768022 -48862098 - MTD LTR MaLR 0 419 352 5 1399 204 40 0 0 chr4 106768022 106768047 -48862073 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1399 592 150 205 20 chr4 106768047 106768169 -48861951 - MTD LTR MaLR -68 351 206 5 1399 344 22 0 22 chr4 106768391 106768437 -48861683 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 1399 189 0 0 0 chr4 106768465 106768486 -48861634 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5 1399 498 180 216 0 chr4 106768486 106768597 -48861523 - B1_Mur4 SINE Alu -14 136 2 5 1399 181 363 95 6 chr4 106768912 106769070 -48861050 - MIR SINE MIR -70 192 21 5 1399 634 270 177 41 chr4 106769170 106769413 -48860707 + B4 SINE B4 1 276 -16 5 1399 218 362 106 58 chr4 106769836 106770044 -48860076 - MIRb SINE MIR -32 236 19 5 1399 1671 31 0 0 chr4 106770871 106771062 -48859058 - B2_Mm1a SINE B2 -1 192 2 5 1399 331 264 24 106 chr4 106771165 106771288 -48858832 - RSINE1 SINE B4 -28 137 25 5 1399 194 216 59 0 chr4 106771289 106771340 -48858780 + L2b LINE L2 3100 3153 -222 5 1399 235 176 17 50 chr4 106772276 106772336 -48857784 + RLTR25A LTR ERVK 519 576 -527 5 1399 593 87 22 0 chr4 106772285 106772377 -48857743 + B1_Mus2 SINE Alu 52 145 -2 5 1399 207 0 0 0 chr4 106772382 106772405 -48857715 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1399 357 204 242 55 chr4 106772447 106772629 -48857491 + B3 SINE B2 1 216 0 5 1399 291 175 0 0 chr4 106772632 106772689 -48857431 + GA-rich Low_complexity Low_complexity 3 59 0 5 1399 387 247 7 12 chr4 106772698 106772803 -48857317 + RSINE1 SINE B4 1 107 -185 5 1399 264 343 48 59 chr4 106772803 106772884 -48857236 + B2_Mm1a SINE B2 1 184 -9 5 1399 1186 158 71 0 chr4 106772893 106773089 -48857031 - B3 SINE B2 -2 214 5 5 1399 755 249 240 0 chr4 106773139 106773372 -48856748 + B4 SINE B4 4 292 0 5 1399 592 238 27 20 chr4 106773385 106773531 -48856589 + B1F2 SINE Alu 1 147 -2 5 1399 393 191 0 0 chr4 106773571 106773639 -48856481 + PB1 SINE Alu 12 79 -48 5 1399 213 94 0 0 chr4 106773639 106773671 -48856449 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1399 343 283 30 0 chr4 106773689 106773788 -48856332 + PB1D10 SINE Alu 16 117 0 5 1399 291 54 0 0 chr4 106773826 106773863 -48856257 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 5 1399 1188 63 0 0 chr4 106773864 106774006 -48856114 - B1_Mus2 SINE Alu -5 142 1 5 1399 353 228 87 15 chr4 106774135 106774250 -48855870 - PB1D10 SINE Alu -4 123 1 5 1399 343 321 104 0 chr4 106774283 106774389 -48855731 + PB1D10 SINE Alu 1 117 0 5 1399 811 137 53 0 chr4 106774640 106774771 -48855349 - B1_Mur1 SINE Alu -7 142 5 5 1399 852 297 87 11 chr4 106775880 106776146 -48853974 - B4 SINE B4 -6 286 1 5 1399 498 301 151 15 chr4 106776309 106776508 -48853612 + B4A SINE B4 60 285 -7 5 1399 258 331 62 16 chr4 106776650 106776779 -48853341 - MIR3 SINE MIR -30 178 44 5 1399 1834 174 34 8 chr4 106776932 106777286 -48852834 - ORR1D1 LTR MaLR -11 363 1 5 1399 1466 121 8 78 chr4 106778201 106778358 -48851762 + URR1A DNA MER1_type 1 158 -68 5 1399 1026 130 0 0 chr4 106778358 106778504 -48851616 + B1_Mus1 SINE Alu 1 146 -2 5 1399 243 88 0 0 chr4 106778504 106778538 -48851582 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 1399 1466 121 8 78 chr4 106778538 106778622 -48851498 + URR1A DNA MER1_type 159 225 -1 5 1399 268 306 111 48 chr4 106779083 106779272 -48850848 - ORR1E LTR MaLR -105 254 54 5 1399 640 143 0 22 chr4 106781572 106781751 -48848369 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 5 1399 696 156 0 0 chr4 106781744 106781924 -48848196 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1399 207 0 0 0 chr4 106782045 106782068 -48848052 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 5 1399 562 224 68 107 chr4 106783270 106783475 -48846645 + B4 SINE B4 2 198 -94 5 1399 482 217 87 0 chr4 106783380 106783495 -48846625 + B1_Mur4 SINE Alu 6 130 -20 5 1399 204 133 62 62 chr4 106783729 106783793 -48846327 + (CAGG)n Simple_repeat Simple_repeat 2 65 0 5 1399 505 320 32 0 chr4 106784517 106784697 -48845423 + MIR SINE MIR 24 205 -57 5 1399 532 258 59 35 chr4 106784726 106784895 -48845225 - ID_B1 SINE B4 -1 223 51 5 1399 349 241 0 25 chr4 106784907 106784988 -48845132 - ID2 SINE ID -2 81 3 5 1399 441 0 0 0 chr4 106785087 106785136 -48844984 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1399 632 228 0 8 chr4 106785137 106785261 -48844859 - RSINE1 SINE B4 -42 123 1 5 1399 259 322 179 22 chr4 106786077 106786261 -48843859 - MamGypLTR3 LTR Gypsy -90 749 537 5 1399 1783 182 109 6 chr4 106787531 106787890 -48842230 - MTD LTR MaLR -14 405 10 5 1399 318 26 0 0 chr4 106787936 106787975 -48842145 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1399 207 0 0 0 chr4 106789258 106789281 -48840839 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1399 906 124 73 0 chr4 106789351 106789488 -48840632 + B1_Mur4 SINE Alu 2 148 -2 5 1399 367 277 8 67 chr4 106789587 106789707 -48840413 + RSINE1 SINE B4 53 165 0 5 1399 267 133 0 0 chr4 106789707 106789752 -48840368 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1399 217 322 38 101 chr4 106789873 106790032 -48840088 - MIRc SINE MIR -29 239 88 5 1399 261 0 0 0 chr4 106790113 106790142 -48839978 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 5 1399 475 200 10 59 chr4 106790142 106790243 -48839877 - B1F2 SINE Alu -17 132 37 5 1399 221 284 45 0 chr4 106792081 106792148 -48837972 - MIR SINE MIR -84 124 55 5 1399 1126 211 140 4 chr4 106792555 106792812 -48837308 + B4A SINE B4 1 292 0 5 1399 330 159 0 0 chr4 106792844 106792913 -48837207 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1399 234 0 0 0 chr4 106792984 106793010 -48837110 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1399 207 218 0 0 chr4 106793677 106793732 -48836388 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1399 250 385 24 8 chr4 106794215 106794338 -48835782 - L2c LINE L2 -234 3153 3029 5 1399 466 219 9 19 chr4 106794574 106794681 -48835439 - PB1D10 SINE Alu -2 115 10 5 1399 217 330 32 11 chr4 106794604 106794699 -48835421 - B4A SINE B4 -119 173 77 5 1399 390 236 13 91 chr4 106794699 106794853 -48835267 - L1MB5 LINE L1 -214 5960 5819 5 1399 268 208 12 38 chr4 106794862 106794942 -48835178 + BC1_Mm scRNA scRNA 14 91 -61 5 1399 759 306 46 18 chr4 106795058 106795341 -48834779 + B4A SINE B4 1 291 -1 5 1399 479 276 44 15 chr4 106795506 106795642 -48834478 - Tigger5 DNA MER2_type -2208 198 59 5 1399 800 222 0 79 chr4 106795660 106795773 -48834347 - B3A SINE B2 0 198 96 5 1399 3248 29 10 33 chr4 106795773 106796172 -48833948 - RLTR10 LTR ERVK 0 390 1 5 1399 800 222 0 79 chr4 106796172 106796273 -48833847 - B3A SINE B2 -103 95 1 5 1399 337 319 56 28 chr4 106797311 106797453 -48832667 - MER5A DNA MER1_type -3 186 41 5 1399 513 361 101 21 chr4 106797792 106798120 -48832000 + LTR16C LTR ERVL 7 360 -129 5 1399 183 354 159 12 chr4 106798224 106798387 -48831733 - MIRm SINE MIR -24 252 66 5 1399 249 235 194 0 chr4 106799519 106799617 -48830503 + B1F SINE Alu 1 117 -32 6 1399 232 149 20 41 chr4 106800187 106800236 -48829884 + GA-rich Low_complexity Low_complexity 1 48 0 6 1399 903 70 0 15 chr4 106800294 106800425 -48829695 - B1_Mur4 SINE Alu 0 150 22 6 1399 198 0 0 0 chr4 106800529 106800551 -48829569 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1399 251 284 52 10 chr4 106800773 106800869 -48829251 + MIRc SINE MIR 69 168 -100 6 1399 423 0 0 0 chr4 106801340 106801387 -48828733 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1399 302 45 23 0 chr4 106801388 106801432 -48828688 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1399 1245 34 0 7 chr4 106801715 106801726 -48828394 - B1_Mm SINE Alu 0 147 137 6 1399 226 0 0 56 chr4 106801726 106801762 -48828358 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1399 1245 34 0 7 chr4 106801762 106801898 -48828222 - B1_Mm SINE Alu -11 136 1 6 1399 585 263 34 126 chr4 106801906 106802145 -48827975 - B4A SINE B4 -69 223 7 6 1399 668 285 102 18 chr4 106802178 106802453 -48827667 - MLT1B LTR MaLR -81 309 12 6 1399 869 126 151 0 chr4 106802833 106802992 -48827128 - URR1A DNA MER1_type -43 183 1 6 1399 432 346 50 8 chr4 106803501 106803740 -48826380 + L1MD3 LINE L1 7534 7782 -213 6 1399 499 234 15 82 chr4 106803821 106803928 -48826192 + RSINE1 SINE B4 11 113 -52 6 1399 1200 60 114 0 chr4 106803928 106804095 -48826025 + B2_Mm1t SINE B2 2 187 -6 6 1399 499 234 15 82 chr4 106804095 106804122 -48825998 + RSINE1 SINE B4 114 136 -29 6 1399 612 244 28 44 chr4 106804144 106804324 -48825796 - B3 SINE B2 -38 178 2 6 1399 287 0 53 0 chr4 106804327 106804365 -48825755 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1399 1160 52 0 0 chr4 106804366 106804501 -48825619 - B1_Mus1 SINE Alu -12 136 2 6 1399 872 186 7 7 chr4 106804531 106804677 -48825443 - B1_Mur4 SINE Alu 0 150 5 6 1399 444 272 212 0 chr4 106804731 106804915 -48825205 + MER58A DNA MER1_type 1 223 -1 6 1399 242 250 0 0 chr4 106805191 106805239 -48824881 + C-rich Low_complexity Low_complexity 1 48 0 6 1399 790 224 16 27 chr4 106805259 106805443 -48824677 - B3A SINE B2 -16 182 1 6 1399 697 142 66 15 chr4 106805649 106805785 -48824335 - B1_Mur4 SINE Alu 0 150 8 6 1399 351 358 40 22 chr4 106805798 106806021 -48824099 - ERVL-int LTR ERVL -2444 3313 3087 6 1399 550 237 66 15 chr4 106806597 106806734 -48823386 + RSINE1 SINE B4 3 146 -19 6 1399 697 248 19 7 chr4 106806842 106806996 -48823124 + RSINE1 SINE B4 3 158 -7 6 1399 191 327 90 36 chr4 106807034 106807145 -48822975 + L2c LINE L2 3256 3372 -15 6 1399 216 0 0 0 chr4 106807654 106807678 -48822442 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1399 225 0 0 0 chr4 106807711 106807736 -48822384 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1399 325 290 78 78 chr4 106808116 106808258 -48821862 + L2c LINE L2 3246 3387 0 6 1399 4120 106 96 63 chr4 106808814 106809546 -48820574 + RMER6A LTR ERVK 1 756 0 6 1399 303 291 0 0 chr4 106809895 106809974 -48820146 + PB1D10 SINE Alu 29 107 -10 6 1399 374 210 12 47 chr4 106810036 106810121 -48819999 - ID4 SINE ID 0 83 2 6 1399 841 228 100 69 chr4 106810198 106810538 -48819582 + RLTR26 LTR ERVK 6 392 -250 6 1399 686 144 186 0 chr4 106810994 106811112 -48819008 - B1_Mur2 SINE Alu -8 141 2 6 1399 783 246 0 0 chr4 106811244 106811386 -48818734 - B1F SINE Alu -7 142 1 6 1399 1593 156 190 101 chr4 106813151 106813249 -48816871 + MTC LTR MaLR 3 102 -319 6 1399 267 31 0 0 chr4 106813249 106813281 -48816839 + (CCTG)n Simple_repeat Simple_repeat 2 33 0 6 1399 1593 156 190 101 chr4 106813281 106813313 -48816807 + MTC LTR MaLR 103 105 -316 6 1399 956 110 13 65 chr4 106813313 106813468 -48816652 - B1_Mus2 SINE Alu 0 147 1 6 1399 1593 156 190 101 chr4 106813468 106813721 -48816399 + MTC LTR MaLR 106 421 0 6 1399 459 0 0 0 chr4 106813764 106813815 -48816305 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1399 278 329 0 0 chr4 106813965 106814038 -48816082 - ID4_ SINE ID -9 74 2 6 1399 992 125 140 6 chr4 106814100 106814300 -48815820 - MTC LTR MaLR -3 418 183 6 1399 330 26 0 0 chr4 106814443 106814482 -48815638 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1399 807 136 0 41 chr4 106814629 106814775 -48815345 + B1_Mus2 SINE Alu 4 143 -4 6 1399 290 321 85 0 chr4 106814863 106814969 -48815151 + PB1D10 SINE Alu 2 116 -1 6 1399 463 232 0 20 chr4 106815403 106815504 -48814616 + MTD LTR MaLR 1 99 -320 6 1399 331 197 14 14 chr4 106815492 106815564 -48814556 + MTC LTR MaLR 335 406 -15 6 1399 211 205 0 0 chr4 106815819 106815858 -48814262 + T-rich Low_complexity Low_complexity 4 42 0 6 1399 844 79 165 8 chr4 106815859 106815986 -48814134 - B1_Mus1 SINE Alu -1 147 1 6 1399 250 403 36 0 chr4 106816226 106816365 -48813755 + L2b LINE L2 3228 3371 -4 6 1399 375 302 36 113 chr4 106816735 106816929 -48813191 - MamSINE1 SINE tRNA -106 184 6 6 1399 254 250 37 46 chr4 106818447 106818556 -48811564 + L1ME4a LINE L1 5977 6084 -40 6 1399 350 261 68 50 chr4 106818734 106818895 -48811225 - RSINE1 SINE B4 0 165 2 6 1399 656 211 30 0 chr4 106819002 106819135 -48810985 - B1_Mur1 SINE Alu -6 143 7 6 1399 738 82 0 9 chr4 106819424 106819535 -48810585 - B1_Mur3 SINE Alu 0 149 40 6 1399 277 145 0 52 chr4 106819483 106819541 -48810579 - 4.5SRNA scRNA scRNA -8 86 32 6 1399 556 182 32 40 chr4 106819881 106820007 -48810113 - B3A SINE B2 -72 126 2 6 1399 2100 168 41 21 chr4 106820370 106820807 -48809313 + RMER6B LTR ERVK 1 446 -15 6 1399 642 190 42 35 chr4 106820966 106821108 -48809012 + B1_Mur1 SINE Alu 1 143 -6 6 1399 224 30 30 0 chr4 106821193 106821226 -48808894 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1399 1159 58 0 0 chr4 106821226 106821363 -48808757 - B1_Mus1 SINE Alu -10 138 2 6 1399 22 56 0 0 chr4 106821374 106821410 -48808710 + AT_rich Low_complexity Low_complexity 1 36 0 6 1399 681 277 100 107 chr4 106821463 106821545 -48808575 - B4A SINE B4 -6 286 227 6 1399 951 218 29 29 chr4 106821545 106821753 -48808367 - B3 SINE B2 -7 209 2 6 1399 681 277 100 107 chr4 106821753 106821941 -48808179 - B4A SINE B4 -66 226 18 6 1399 195 114 0 0 chr4 106821962 106821997 -48808123 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1399 180 0 0 0 chr4 106821998 106822018 -48808102 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1399 3343 88 33 43 chr4 106822038 106822548 -48807572 - Lx LINE L1 -6 6648 6144 6 1399 697 217 19 50 chr4 106823462 106823622 -48806498 - RSINE1 SINE B4 0 165 11 6 1400 243 366 82 26 chr4 106823738 106824007 -48806113 + L2c LINE L2 2911 3194 -193 6 1400 374 331 53 0 chr4 106824280 106824413 -48805707 + ID_B1 SINE B4 82 221 -3 6 1400 750 134 0 0 chr4 106824413 106824540 -48805580 + (GGA)n Simple_repeat Simple_repeat 1 127 0 6 1400 852 170 7 0 chr4 106824580 106824721 -48805399 + B1_Mus1 SINE Alu 1 142 -6 6 1400 417 39 0 0 chr4 106824722 106824773 -48805347 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1400 672 77 0 0 chr4 106824773 106824863 -48805257 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 6 1400 354 275 51 76 chr4 106825100 106825218 -48804902 + PB1 SINE Alu 1 115 -12 6 1400 243 135 308 51 chr4 106826194 106826272 -48803848 + PB1D10 SINE Alu 15 112 -5 6 1400 1200 54 7 0 chr4 106826297 106826444 -48803676 + B1_Mus1 SINE Alu 1 148 0 6 1400 186 43 0 0 chr4 106826460 106826483 -48803637 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 6 1400 322 284 40 104 chr4 106826540 106826713 -48803407 + L1ME4a LINE L1 5874 6035 -89 6 1400 226 241 19 0 chr4 106827408 106827462 -48802658 + ZP3AR Satellite Satellite 31 85 -127 6 1400 267 136 0 0 chr4 106827419 106827463 -48802657 + ID4 SINE ID 1 44 -39 6 1400 198 0 0 0 chr4 106827862 106827884 -48802236 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 1400 236 315 83 9 chr4 106828291 106828400 -48801720 - MIRb SINE MIR -121 147 31 6 1400 792 59 0 0 chr4 106828848 106828950 -48801170 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 6 1400 1217 54 7 0 chr4 106828954 106829101 -48801019 - B1_Mus1 SINE Alu 0 148 1 6 1400 183 261 113 52 chr4 106829653 106829750 -48800370 - MIR3 SINE MIR -36 172 70 6 1400 611 325 78 59 chr4 106830251 106830571 -48799549 + MLT1E2 LTR MaLR 1 326 -301 6 1400 359 333 34 14 chr4 106830677 106830823 -48799297 + MIR SINE MIR 64 212 -50 6 1400 216 175 0 0 chr4 106830956 106830996 -48799124 + (CCTG)n Simple_repeat Simple_repeat 2 41 0 6 1400 913 143 7 33 chr4 106831411 106831563 -48798557 + B1_Mur3 SINE Alu 2 149 0 6 1400 351 113 0 0 chr4 106831606 106831659 -48798461 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1400 258 32 0 0 chr4 106832345 106832376 -48797744 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1400 341 328 15 39 chr4 106832746 106832764 -48797356 - B1_Mus2 SINE Alu -20 127 112 6 1400 198 0 0 0 chr4 106832764 106832786 -48797334 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 1400 507 270 1 2 chr4 106832786 106832897 -48797223 - B1F SINE Alu -36 111 1 6 1400 815 262 92 122 chr4 106832976 106833345 -48796775 - MTE2a LTR MaLR -21 358 1 6 1400 435 212 0 0 chr4 106833605 106833685 -48796435 - ID4_ SINE ID -2 81 2 6 1400 222 220 0 20 chr4 106834418 106834469 -48795651 + CT-rich Low_complexity Low_complexity 2 51 0 6 1400 450 206 47 9 chr4 106834893 106835011 -48795109 - PB1D9 SINE Alu -22 127 14 6 1400 236 222 173 0 chr4 106835183 106835264 -48794856 + L1MEd LINE L1 977 1071 -5048 6 1400 673 236 28 0 chr4 106835345 106835489 -48794631 + B1F SINE Alu 1 148 -1 6 1400 540 271 98 157 chr4 106835505 106835956 -48794164 + MLT1F1 LTR MaLR 162 569 0 7 1400 195 308 169 32 chr4 106836208 106836332 -48793788 + L2b LINE L2 3224 3364 -11 7 1400 239 356 28 86 chr4 106837363 106837618 -48792502 + L2c LINE L2 3110 3349 -38 7 1400 445 284 9 9 chr4 106837759 106837869 -48792251 + RSINE1 SINE B4 46 155 -10 7 1400 1106 95 0 0 chr4 106839122 106839269 -48790851 + B1_Mus2 SINE Alu 1 147 0 7 1400 235 179 0 29 chr4 106839275 106839344 -48790776 + GA-rich Low_complexity Low_complexity 2 68 0 7 1400 612 0 0 0 chr4 106839855 106839923 -48790197 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1400 330 260 52 0 chr4 106840102 106840179 -48789941 + RSINE1 SINE B4 8 88 -77 7 1400 543 53 0 0 chr4 106840188 106840263 -48789857 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1400 1354 86 11 0 chr4 106840890 106841076 -48789044 + B2_Mm1t SINE B2 3 190 -3 7 1400 237 345 26 0 chr4 106841551 106841664 -48788456 - PB1D10 SINE Alu -1 116 1 7 1400 527 284 117 67 chr4 106841768 106842051 -48788069 - L1MEd LINE L1 -5021 1098 802 7 1400 1158 110 35 0 chr4 106842150 106842323 -48787797 + B2_Mm1t SINE B2 1 179 -14 7 1400 352 133 0 15 chr4 106842355 106842455 -48787665 + B2_Mm2 SINE B2 47 181 -14 7 1400 713 163 8 37 chr4 106842903 106843037 -48787083 - B1_Mm SINE Alu -17 130 1 7 1400 828 120 0 0 chr4 106843135 106843252 -48786868 - B1_Mus1 SINE Alu 0 148 32 7 1400 1309 86 40 0 chr4 106843294 106843468 -48786652 + B2_Mm2 SINE B2 1 181 -14 7 1400 398 52 0 0 chr4 106843503 106843561 -48786559 + B2_Mm1a SINE B2 127 184 -9 7 1400 1023 103 0 7 chr4 106843572 106843719 -48786401 + B1_Mus1 SINE Alu 2 147 -1 7 1400 518 284 55 55 chr4 106845122 106845231 -48784889 + MIR SINE MIR 27 135 -127 7 1400 1160 175 20 0 chr4 106845231 106845431 -48784689 - B3 SINE B2 -12 204 1 7 1400 518 284 55 55 chr4 106845431 106845556 -48784564 + MIR SINE MIR 136 261 -1 7 1400 210 158 0 0 chr4 106845587 106845625 -48784495 + T-rich Low_complexity Low_complexity 1 38 0 7 1400 251 240 0 20 chr4 106845694 106845745 -48784375 - RSINE1 SINE B4 -114 51 2 7 1400 262 311 103 9 chr4 106845935 106846042 -48784078 + PB1D10 SINE Alu 1 117 0 7 1400 589 258 8 15 chr4 106846299 106846429 -48783691 - ID_B1 SINE B4 -8 216 88 7 1400 671 285 43 5 chr4 106846614 106846822 -48783298 + B3 SINE B2 1 216 0 7 1400 226 194 0 0 chr4 106847138 106847174 -48782946 + (CGGA)n Simple_repeat Simple_repeat 2 37 0 7 1400 380 135 14 0 chr4 106847178 106847252 -48782868 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1400 521 252 8 16 chr4 106847573 106847694 -48782426 - RSINE1 SINE B4 -42 123 4 7 1400 265 214 27 54 chr4 106848261 106848335 -48781785 - tRNA-Ala-GCA tRNA tRNA -1 74 3 7 1400 1159 51 0 0 chr4 106848438 106848576 -48781544 - B1_Mus2 SINE Alu -8 139 2 7 1400 983 139 47 67 chr4 106848848 106849041 -48781079 - URR1B DNA MER1_type 0 225 37 7 1400 385 271 51 114 chr4 106849590 106849749 -48780371 + B3A SINE B2 32 183 -15 7 1400 916 132 21 0 chr4 106849749 106849893 -48780227 + B1_Mus1 SINE Alu 2 148 0 7 1400 385 271 51 114 chr4 106849893 106849908 -48780212 + B3A SINE B2 184 195 -3 7 1400 180 0 0 0 chr4 106852442 106852462 -48777658 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1400 268 259 99 113 chr4 106852706 106852726 -48777394 + YREP_Mm Unknown Unknown 140 191 -1621 7 1400 1072 51 0 0 chr4 106852726 106852863 -48777257 - B1_Mus1 SINE Alu 0 148 12 7 1400 268 259 99 113 chr4 106852863 106852918 -48777202 + YREP_Mm Unknown Unknown 192 348 -1464 7 1400 211 273 38 25 chr4 106852918 106852997 -48777123 + PB1D10 SINE Alu 1 80 -37 7 1400 265 320 39 29 chr4 106853239 106853342 -48776778 - PB1D10 SINE Alu -1 116 13 7 1400 286 336 8 66 chr4 106853568 106853689 -48776431 - PB1D10 SINE Alu -3 114 1 7 1400 827 129 98 0 chr4 106853706 106853838 -48776282 + B1_Mus2 SINE Alu 3 147 0 7 1400 262 294 143 27 chr4 106853858 106853970 -48776150 - MIRc SINE MIR -128 140 16 7 1400 261 233 17 127 chr4 106854577 106854695 -48775425 + MT2B LTR ERVL 154 258 -343 7 1400 525 163 21 15 chr4 106854590 106854708 -48775412 + B1F SINE Alu 4 116 -33 7 1400 1063 211 19 0 chr4 106854997 106855205 -48774915 - B3 SINE B2 -2 214 3 7 1400 891 110 30 30 chr4 106855225 106855393 -48774727 - Lx LINE L1 -1 6653 6486 7 1400 250 256 119 24 chr4 106855534 106855618 -48774502 - MIR SINE MIR -114 148 57 7 1400 226 344 21 11 chr4 106855715 106855809 -48774311 + PB1D10 SINE Alu 1 95 -22 7 1400 266 108 12 108 chr4 106856534 106856602 -48773518 + T-rich Low_complexity Low_complexity 16 76 0 7 1400 1223 54 0 0 chr4 106856602 106856750 -48773370 - B1_Mus1 SINE Alu 0 148 1 7 1400 266 108 12 108 chr4 106856750 106856764 -48773356 + T-rich Low_complexity Low_complexity 2 15 0 7 1400 715 246 22 22 chr4 106856886 106857069 -48773051 + B3A SINE B2 1 183 -15 7 1400 23 33 0 0 chr4 106857069 106857099 -48773021 + AT_rich Low_complexity Low_complexity 1 30 0 7 1400 1346 85 11 6 chr4 106857106 106857284 -48772836 + B2_Mm1t SINE B2 1 179 -14 7 1400 422 113 396 0 chr4 106857374 106857480 -48772640 + B2_Mm2 SINE B2 47 194 -1 7 1400 430 265 218 18 chr4 106857806 106857930 -48772190 + ID_B1 SINE B4 1 157 -67 7 1400 1155 185 54 0 chr4 106857930 106858135 -48771985 + B3 SINE B2 1 216 0 7 1400 430 265 218 18 chr4 106858135 106858175 -48771945 + ID_B1 SINE B4 158 198 -26 7 1400 225 200 26 79 chr4 106859310 106859386 -48770734 - ID2 SINE ID -10 73 2 7 1400 563 239 70 28 chr4 106859600 106859742 -48770378 + B1F1 SINE Alu 1 148 -1 7 1400 240 351 0 0 chr4 106859740 106859797 -48770323 + ID4_ SINE ID 2 58 -25 7 1400 943 168 0 20 chr4 106860962 106861114 -48769006 - B1_Mur3 SINE Alu 0 149 1 7 1400 189 0 0 0 chr4 106861137 106861158 -48768962 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1400 1434 61 0 6 chr4 106861161 106861341 -48768779 - B2_Mm2 SINE B2 -15 180 2 7 1400 352 262 47 12 chr4 106861682 106861767 -48768353 - ID_B1 SINE B4 0 224 137 7 1400 283 333 68 59 chr4 106861767 106861799 -48768321 - PB1D7 SINE Alu -1 118 1 7 1400 412 215 142 23 chr4 106861968 106862144 -48767976 - L1MB7 LINE L1 0 6184 5988 7 1400 460 257 36 9 chr4 106862256 106862366 -48767754 + PB1D10 SINE Alu 8 120 0 7 1400 189 0 0 0 chr4 106863116 106863137 -48766983 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1400 485 288 49 38 chr4 106863780 106863964 -48766156 - MER2B DNA MER2_type 0 336 151 7 1400 282 279 243 0 chr4 106864039 106864150 -48765970 - MER2 DNA MER2_type -130 215 78 7 1400 190 320 156 33 chr4 106864212 106864357 -48765763 - MIR SINE MIR -71 191 31 7 1400 196 274 20 0 chr4 106865230 106865281 -48764839 - MER5A DNA MER1_type -110 79 28 7 1400 361 242 0 108 chr4 106865607 106865621 -48764499 + MT2B LTR ERVL 152 250 -351 7 1400 508 268 0 0 chr4 106865621 106865718 -48764402 + B1_Mur3 SINE Alu 1 97 -52 7 1400 1528 32 5 0 chr4 106866240 106866426 -48763694 - L1Md_F3 LINE L1 -1 6583 6397 7 1400 674 245 68 9 chr4 106866454 106866676 -48763444 - L1MA6 LINE L1 -53 6247 6013 7 1400 1413 72 0 35 chr4 106866746 106866947 -48763173 - B2_Mm2 SINE B2 0 195 2 7 1400 378 0 0 0 chr4 106867646 106867688 -48762432 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1400 22 35 0 0 chr4 106868306 106868335 -48761785 + AT_rich Low_complexity Low_complexity 1 29 0 7 1400 298 323 156 0 chr4 106868335 106868431 -48761689 - RSINE1 SINE B4 -2 163 53 7 1400 3022 100 77 2 chr4 106868611 106869053 -48761067 - MT2C_Mm LTR ERVL 0 475 1 7 1400 1921 118 38 46 chr4 106869061 106869406 -48760714 - RMER4A LTR ERVK 0 466 125 7 1400 247 290 180 0 chr4 106869551 106869651 -48760469 + ID_B1 SINE B4 84 201 -23 7 1400 628 239 27 40 chr4 106869732 106869880 -48760240 - B1_Mm SINE Alu 0 147 2 7 1400 229 262 59 73 chr4 106869880 106869935 -48760185 - RLTR11A2 LTR ERVK -402 125 73 7 1400 237 65 0 0 chr4 106871100 106871131 -48758989 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1400 1013 230 35 10 chr4 106871142 106871340 -48758780 - B3 SINE B2 -13 203 1 7 1400 851 85 17 0 chr4 106871725 106871843 -48758277 - PB1D9 SINE Alu 0 120 1 7 1400 718 234 67 10 chr4 106871864 106872058 -48758062 - B3 SINE B2 -8 208 4 7 1400 616 271 42 24 chr4 106872140 106872352 -48757768 - B3 SINE B2 0 216 1 7 1400 183 237 0 0 chr4 106872689 106872727 -48757393 - L4 LINE RTE -1407 622 585 7 1400 251 327 20 10 chr4 106872786 106872888 -48757232 - PB1D9 SINE Alu -8 112 10 7 1400 213 39 0 0 chr4 106873743 106873769 -48756351 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1400 330 253 0 62 chr4 106873794 106873874 -48756246 - RSINE1 SINE B4 -19 146 72 7 1400 219 245 19 19 chr4 106873956 106874010 -48756110 - RSINE1 SINE B4 -101 64 11 7 1400 612 240 120 5 chr4 106874298 106874453 -48755667 - B3 SINE B2 -7 209 37 7 1400 268 271 29 0 chr4 106875193 106875263 -48754857 - ID4 SINE ID -10 73 2 7 1400 358 211 61 40 chr4 106875263 106875362 -48754758 - PB1D10 SINE Alu -2 115 15 7 1400 989 162 136 0 chr4 106875491 106875689 -48754431 + URR1A DNA MER1_type 2 226 0 7 1400 969 216 100 15 chr4 106876183 106876442 -48753678 - B4A SINE B4 -7 285 5 7 1400 1205 28 14 0 chr4 106876917 106877061 -48753059 - B1_Mm SINE Alu 0 147 2 7 1400 330 217 0 0 chr4 106877550 106877610 -48752510 + B3 SINE B2 132 191 -25 8 1400 255 314 82 60 chr4 106877636 106877819 -48752301 - MIRc SINE MIR -72 196 7 8 1400 254 195 123 49 chr4 106878026 106878107 -48752013 + PB1D7 SINE Alu 5 91 -29 8 1400 302 176 153 56 chr4 106878124 106878196 -48751924 + B3 SINE B2 127 205 -11 8 1400 393 181 119 12 chr4 106878220 106878304 -48751816 + B3A SINE B2 1 93 -105 8 1400 333 0 0 0 chr4 106878320 106878357 -48751763 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1400 207 0 0 0 chr4 106878390 106878413 -48751707 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1400 1176 68 7 0 chr4 106878514 106878660 -48751460 - B1_Mus1 SINE Alu -1 147 1 8 1400 255 125 0 0 chr4 106879013 106879053 -48751067 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1400 243 279 87 2 chr4 106879383 106879485 -48750635 + MIRc SINE MIR 49 156 -52 8 1400 440 256 0 0 chr4 106879990 106880076 -48750044 + B1F SINE Alu 6 91 -58 8 1400 441 0 0 0 chr4 106880094 106880143 -48749977 + (CATA)n Simple_repeat Simple_repeat 2 50 0 8 1400 240 264 147 31 chr4 106880471 106880600 -48749520 + LTR16C LTR ERVL 186 329 -160 8 1400 373 243 123 71 chr4 106881146 106881301 -48748819 - RSINE1 SINE B4 0 165 3 8 1400 192 161 0 0 chr4 106882379 106882410 -48747710 - MIR SINE MIR -7 255 225 8 1400 924 177 14 0 chr4 106884029 106884176 -48745944 + B1_Mur2 SINE Alu 1 149 0 8 1400 226 264 32 65 chr4 106884225 106884318 -48745802 + L2a LINE L2 3322 3411 -15 8 1400 604 279 84 28 chr4 106884636 106884850 -48745270 - MTE2a LTR MaLR -81 298 73 8 1400 1111 181 0 62 chr4 106885484 106885708 -48744412 - B3 SINE B2 -6 210 1 8 1400 242 372 23 0 chr4 106885724 106885810 -48744310 + L2b LINE L2 3113 3200 -175 8 1400 233 337 0 20 chr4 106886415 106886515 -48743605 + (CGTG)n Simple_repeat Simple_repeat 2 99 0 8 1400 327 85 0 0 chr4 106886528 106886575 -48743545 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1400 228 316 0 0 chr4 106886595 106886671 -48743449 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1400 492 237 145 0 chr4 106888093 106888245 -48741875 + ID_B1 SINE B4 51 224 0 8 1400 354 221 139 0 chr4 106888268 106888354 -48741766 - L3 LINE CR1 -54 4435 4338 8 1400 21 0 0 0 chr4 106889414 106889435 -48740685 + AT_rich Low_complexity Low_complexity 1 21 0 8 1400 667 232 149 5 chr4 106889451 106889646 -48740474 + ID_B1 SINE B4 1 223 -1 8 1400 215 157 78 0 chr4 106890669 106890720 -48739400 - L3 LINE CR1 -96 4393 4339 8 1400 233 240 186 10 chr4 106891225 106891322 -48738798 - MIRc SINE MIR -63 205 92 8 1400 239 29 0 54 chr4 106891416 106891453 -48738667 + (AGCTG)n Simple_repeat Simple_repeat 4 38 0 8 1400 533 89 33 22 chr4 106892509 106892601 -48737519 - B2_Mm2 SINE B2 0 195 103 8 1400 689 96 0 0 chr4 106892685 106892789 -48737331 + B2_Mm2 SINE B2 3 106 -89 8 1400 322 275 0 0 chr4 106892883 106892952 -48737168 + B4A SINE B4 216 284 -8 8 1400 500 277 67 78 chr4 106892993 106893263 -48736857 + B4 SINE B4 1 267 -25 8 1400 1565 21 38 0 chr4 106893707 106893893 -48736227 + B2_Mm1a SINE B2 1 193 0 8 1400 1081 79 0 7 chr4 106894848 106894988 -48735132 + B1_Mus1 SINE Alu 3 141 -7 8 1400 304 192 0 0 chr4 106895005 106895057 -48735063 - ID_B1 SINE B4 -13 211 160 8 1400 527 0 16 0 chr4 106895077 106895140 -48734980 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1400 233 262 0 187 chr4 106895194 106895290 -48734830 - MER44B DNA MER2_type -155 395 328 8 1400 578 227 0 0 chr4 106895290 106895400 -48734720 - PB1D10 SINE Alu -5 112 3 8 1400 233 262 0 187 chr4 106895400 106895458 -48734662 - MER44B DNA MER2_type -223 327 270 8 1400 502 276 8 8 chr4 106895465 106895593 -48734527 + RSINE1 SINE B4 2 129 -36 8 1400 351 44 0 0 chr4 106895645 106895690 -48734430 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1400 1168 244 47 51 chr4 106895763 106896509 -48733611 + RMER1B Other Other 1 750 -592 8 1400 468 0 0 0 chr4 106896555 106896607 -48733513 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1400 241 47 23 23 chr4 106897473 106897517 -48732603 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 8 1400 1166 62 14 0 chr4 106897519 106897663 -48732457 - B1_Mus1 SINE Alu -2 146 1 8 1400 209 163 0 20 chr4 106898464 106898514 -48731606 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 8 1400 310 244 25 25 chr4 106898534 106898614 -48731506 - MLT2C2 LTR ERVL -51 508 429 8 1400 188 111 28 0 chr4 106898760 106898796 -48731324 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1400 418 145 94 0 chr4 106898800 106898917 -48731203 + Lx9 LINE L1 7495 7622 -22 8 1400 245 258 61 0 chr4 106898933 106898999 -48731121 + ID4 SINE ID 1 70 -13 8 1400 286 243 27 0 chr4 106899007 106899081 -48731039 - MLT2C2 LTR ERVL -371 93 18 8 1400 196 225 0 0 chr4 106899203 106899243 -48730877 - MIR SINE MIR -107 155 116 8 1400 824 142 11 22 chr4 106899483 106899748 -48730372 - RLTR15 LTR ERVK -38 321 1 8 1400 447 304 13 51 chr4 106899778 106899934 -48730186 - RSINE1 SINE B4 -5 160 11 8 1400 343 110 0 36 chr4 106899966 106900082 -48730038 - B2_Mm2 SINE B2 0 195 47 8 1400 767 123 145 0 chr4 106900303 106900441 -48729679 - B2_Mm1t SINE B2 -34 159 2 8 1400 242 267 17 0 chr4 106901137 106901197 -48728923 + ID4 SINE ID 21 81 -2 8 1400 544 237 125 38 chr4 106901349 106901533 -48728587 + B3 SINE B2 10 209 -7 8 1400 306 53 17 34 chr4 106901607 106901666 -48728454 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1400 321 348 0 0 chr4 106901748 106901840 -48728280 + BC1_Mm scRNA scRNA 2 93 -59 8 1400 310 186 0 0 chr4 106902114 106902173 -48727947 + B1_Mus2 SINE Alu 1 59 -88 8 1400 216 0 0 0 chr4 106902353 106902377 -48727743 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1400 448 241 55 62 chr4 106902381 106902527 -48727593 - B3A SINE B2 -53 145 1 8 1400 683 258 10 52 chr4 106902745 106902937 -48727183 - ID_B1 SINE B4 -39 185 2 8 1400 459 252 44 30 chr4 106903065 106903200 -48726920 + B1F SINE Alu 11 147 -2 8 1400 352 351 7 30 chr4 106903208 106903343 -48726777 + RSINE1 SINE B4 3 134 -31 8 1400 1170 62 7 0 chr4 106903516 106903661 -48726459 - B1_Mus2 SINE Alu 0 147 2 8 1400 2077 135 6 8 chr4 106903661 106904019 -48726101 + RLTR14 LTR ERV1 24 380 -2 8 1400 834 156 250 0 chr4 106904592 106904772 -48725348 + URR1A DNA MER1_type 2 226 0 8 1400 1200 61 0 0 chr4 106905195 106905342 -48724778 - B1_Mm SINE Alu 0 147 1 8 1400 210 325 35 11 chr4 106905817 106905904 -48724216 + MIRb SINE MIR 29 117 -151 8 1400 217 246 92 0 chr4 106907056 106907121 -48722999 - BC1_Mm scRNA scRNA -67 85 15 8 1400 587 243 85 33 chr4 106907180 106907333 -48722787 - RSINE1 SINE B4 -2 163 3 8 1400 400 217 126 35 chr4 106907400 106907543 -48722577 - L1MB3 LINE L1 -216 5967 5812 8 1400 615 131 163 13 chr4 106907562 106907741 -48722379 + B3 SINE B2 1 194 -1 8 1400 643 242 52 36 chr4 106907747 106907940 -48722180 - B3A SINE B2 -1 197 2 8 1400 180 293 52 0 chr4 106908163 106908221 -48721899 + L4 LINE RTE 1968 2028 -1 8 1400 1210 61 0 0 chr4 106908541 106908688 -48721432 - B1_Mus2 SINE Alu 0 147 1 8 1400 556 106 21 31 chr4 106908869 106908966 -48721154 + PB1D9 SINE Alu 24 119 -1 8 1400 240 315 22 11 chr4 106909593 106909683 -48720437 + MIR SINE MIR 95 185 -77 8 1400 286 238 38 8 chr4 106911885 106911916 -48718204 + ORR1B1-int LTR MaLR 613 647 -862 8 1400 779 44 3 39 chr4 106911916 106912050 -48718070 + B1_Mm SINE Alu 2 118 -31 8 1400 424 290 79 14 chr4 106912075 106912215 -48717905 + B1F1 SINE Alu 1 149 0 8 1400 1479 54 21 0 chr4 106913665 106913851 -48716269 - B2_Mm2 SINE B2 -4 191 2 8 1400 22 0 0 30 chr4 106913984 106914001 -48716119 + AT_rich Low_complexity Low_complexity 1 17 0 8 1400 913 222 67 0 chr4 106914001 106914195 -48715925 - B3 SINE B2 -9 207 1 8 1400 22 0 0 30 chr4 106914195 106914210 -48715910 + AT_rich Low_complexity Low_complexity 1 15 0 8 1400 979 118 69 29 chr4 106914210 106914384 -48715736 - B2_Mm2 SINE B2 -14 181 1 8 1400 550 250 49 14 chr4 106914444 106914586 -48715534 - RSINE1 SINE B4 -17 148 2 8 1400 1062 132 0 11 chr4 106914698 106914881 -48715239 + B2_Mm2 SINE B2 14 194 -1 8 1400 787 196 0 33 chr4 106914896 106915049 -48715071 + B1_Mur3 SINE Alu 1 148 -1 8 1400 1230 55 0 0 chr4 106915073 106915219 -48714901 + B1_Mus2 SINE Alu 1 146 -1 8 1400 1225 41 0 0 chr4 106915223 106915370 -48714750 + B1_Mm SINE Alu 1 147 0 8 1400 860 177 217 0 chr4 106915586 106915761 -48714359 + B3 SINE B2 1 213 -3 8 1400 207 0 0 0 chr4 106916244 106916267 -48713853 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1400 240 220 0 0 chr4 106916271 106916321 -48713799 - PB1D7 SINE Alu 0 120 71 8 1400 290 231 77 0 chr4 106917987 106918078 -48712042 + PB1D10 SINE Alu 6 103 -14 8 1400 650 126 59 0 chr4 106918415 106918534 -48711586 - B1_Mus2 SINE Alu -5 142 17 8 1400 239 274 40 14 chr4 106918588 106918662 -48711458 + ID4 SINE ID 2 77 -6 8 1400 22 0 0 0 chr4 106918996 106919018 -48711102 + AT_rich Low_complexity Low_complexity 1 22 0 8 1400 988 124 14 14 chr4 106919386 106919533 -48710587 - B1_Mur4 SINE Alu -1 149 3 8 1400 247 222 0 0 chr4 106919533 106919587 -48710533 + PB1 SINE Alu 66 119 -8 8 1400 992 72 65 0 chr4 106921407 106921545 -48708575 - B1_Mus2 SINE Alu 0 147 1 9 1400 237 311 58 64 chr4 106921942 106922114 -48708006 + L2c LINE L2 3090 3260 -127 9 1400 228 277 15 15 chr4 106922138 106922204 -48707916 + L2c LINE L2 3359 3424 -2 9 1400 1162 50 0 0 chr4 106922629 106922768 -48707352 + B1_Mus1 SINE Alu 1 139 -9 9 1400 230 0 33 0 chr4 106922768 106922798 -48707322 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1400 503 288 0 0 chr4 106922940 106923051 -48707069 - B1F SINE Alu -37 112 2 9 1400 475 295 119 5 chr4 106924364 106924582 -48705538 - MIRb SINE MIR -6 262 20 9 1400 213 300 0 55 chr4 106925704 106925831 -48704289 + C-rich Low_complexity Low_complexity 6 125 0 9 1400 21 0 0 0 chr4 106925852 106925873 -48704247 + GC_rich Low_complexity Low_complexity 1 21 0 9 1400 261 136 15 29 chr4 106926446 106926514 -48703606 + (CGGGG)n Simple_repeat Simple_repeat 1 67 0 9 1400 244 253 40 13 chr4 106927641 106927717 -48702403 - PB1D7 SINE Alu 0 120 43 9 1400 342 0 0 0 chr4 106928119 106928157 -48701963 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1400 24 67 0 0 chr4 106928349 106928394 -48701726 + AT_rich Low_complexity Low_complexity 1 45 0 9 1400 443 237 178 0 chr4 106928486 106928604 -48701516 - MER58A DNA MER1_type -23 201 63 9 1400 206 289 0 0 chr4 106928606 106928658 -48701462 + CT-rich Low_complexity Low_complexity 1 52 0 9 1400 249 259 0 0 chr4 106928658 106928716 -48701404 - tRNA-Ala-GCY_ tRNA tRNA -17 58 1 9 1400 226 341 33 0 chr4 106928747 106928838 -48701282 - L3 LINE CR1 -833 3656 3563 9 1400 453 326 14 7 chr4 106928875 106929017 -48701103 - B1F SINE Alu -5 144 2 9 1400 216 354 89 37 chr4 106929017 106929047 -48701073 - B4 SINE B4 -200 92 56 9 1400 315 256 0 13 chr4 106929033 106929112 -48701008 + BC1_Mm scRNA scRNA 8 85 -67 9 1400 201 121 0 0 chr4 106929456 106929489 -48700631 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1400 237 159 0 0 chr4 106929493 106929537 -48700583 + (CATA)n Simple_repeat Simple_repeat 4 47 0 9 1400 1226 54 0 0 chr4 106929560 106929707 -48700413 - B1_Mus2 SINE Alu 0 147 1 9 1400 1416 74 32 5 chr4 106929709 106929899 -48700221 - B2_Mm2 SINE B2 0 195 1 9 1400 358 243 34 51 chr4 106930145 106930262 -48699858 + RSINE1 SINE B4 4 118 -47 9 1400 26 64 0 0 chr4 106930320 106930367 -48699753 + AT_rich Low_complexity Low_complexity 1 47 0 9 1400 396 226 32 65 chr4 106930411 106930534 -48699586 + PB1D7 SINE Alu 1 119 -1 9 1400 273 57 0 0 chr4 106930586 106930621 -48699499 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1400 297 0 0 0 chr4 106930621 106930654 -48699466 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1400 270 81 0 0 chr4 106930705 106930742 -48699378 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 9 1400 334 260 92 30 chr4 106930977 106931108 -48699012 - MLT1A1 LTR MaLR -2 406 268 9 1400 1200 54 0 13 chr4 106931162 106931311 -48698809 + B1_Mus1 SINE Alu 1 147 -1 9 1400 333 312 102 25 chr4 106931757 106932040 -48698080 - L1MEf LINE L1 -4872 1328 1024 9 1400 272 225 41 27 chr4 106932103 106932176 -48697944 - RSINE1 SINE B4 -83 82 9 9 1400 303 286 89 23 chr4 106932817 106933063 -48697057 + L1ME3 LINE L1 5827 6090 -354 9 1400 352 245 143 0 chr4 106933151 106933249 -48696871 + PB1D10 SINE Alu 1 112 -5 9 1400 324 0 0 0 chr4 106933395 106933431 -48696689 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1400 301 303 71 27 chr4 106933440 106933552 -48696568 + B4 SINE B4 34 150 -142 9 1400 222 171 0 0 chr4 106933565 106933606 -48696514 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1400 1107 82 0 20 chr4 106933790 106933939 -48696181 + B1_Mus1 SINE Alu 2 147 -1 9 1400 964 97 154 6 chr4 106933944 106934100 -48696020 - B2_Mm2 SINE B2 -15 180 2 9 1400 675 66 0 0 chr4 106934130 106934221 -48695899 - B1_Mus2 SINE Alu 0 147 57 9 1400 246 164 35 35 chr4 106934179 106934236 -48695884 - RLTR25A LTR ERVK -531 572 516 9 1400 377 265 10 10 chr4 106934300 106934399 -48695721 + PB1 SINE Alu 22 120 -7 9 1400 353 250 202 0 chr4 106934534 106934658 -48695462 + B1F SINE Alu 1 149 0 9 1400 238 295 26 0 chr4 106935397 106935475 -48694645 - ID4_ SINE ID 0 83 4 9 1400 261 268 14 14 chr4 106935502 106935574 -48694546 - PB1D10 SINE Alu 0 117 46 9 1400 1040 212 39 0 chr4 106935649 106935852 -48694268 - B3 SINE B2 -4 212 2 9 1400 575 241 148 0 chr4 106936190 106936352 -48693768 - B3 SINE B2 -3 213 28 9 1400 3727 54 2 4 chr4 106936920 106937384 -48692736 + L1_Mus1 LINE L1 6089 6551 -16 9 1400 545 211 0 35 chr4 106937520 106937633 -48692487 + PB1D7 SINE Alu 7 115 -5 9 1400 778 210 27 54 chr4 106937640 106937717 -48692403 + B3A SINE B2 1 75 -123 9 1400 5650 95 127 22 chr4 106937717 106938607 -48691513 - RLTR13C1 LTR ERVK 0 983 1 9 1400 778 217 29 58 chr4 106938607 106938740 -48691380 + B3A SINE B2 76 203 -13 9 1400 617 198 0 0 chr4 106938782 106938893 -48691227 + B1_Mur4 SINE Alu 2 112 -38 9 1400 1027 223 10 0 chr4 106939286 106939483 -48690637 - B3 SINE B2 -15 201 3 9 1400 454 189 62 9 chr4 106939721 106939833 -48690287 - ID_B1 SINE B4 -2 222 105 9 1400 333 291 0 64 chr4 106939951 106940076 -48690044 + PB1D10 SINE Alu 1 117 0 9 1400 554 265 91 0 chr4 106940240 106940372 -48689748 - B1F SINE Alu -5 144 1 9 1400 981 206 58 14 chr4 106940403 106940610 -48689510 - B3 SINE B2 0 216 1 9 1400 495 0 0 0 chr4 106940612 106940667 -48689453 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1400 242 348 22 0 chr4 106940671 106940760 -48689360 - B1F2 SINE Alu -14 135 45 9 1400 239 292 48 36 chr4 106940795 106940857 -48689263 - L1M4 LINE L1 -284 5894 5826 9 1400 1249 113 0 11 chr4 106940857 106941036 -48689084 - B2_Mm2 SINE B2 -18 177 1 9 1400 239 292 48 36 chr4 106941036 106941140 -48688980 - L1M4 LINE L1 -353 5825 5726 9 1400 416 289 61 73 chr4 106941159 106941323 -48688797 + RSINE1 SINE B4 3 164 -1 9 1400 505 299 189 36 chr4 106941392 106941916 -48688204 + L1MEf LINE L1 1230 1833 -4409 9 1400 213 191 0 21 chr4 106941980 106942001 -48688119 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1400 1835 153 78 3 chr4 106942001 106942349 -48687771 + ORR1D1 LTR MaLR 1 374 0 9 1400 213 191 0 21 chr4 106942349 106942375 -48687745 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1400 516 294 41 52 chr4 106942380 106942671 -48687449 - B4A SINE B4 -4 288 1 9 1400 302 340 39 0 chr4 106942745 106942848 -48687272 + PB1D10 SINE Alu 3 109 -8 9 1400 833 147 14 27 chr4 106942861 106943008 -48687112 + B1_Mur3 SINE Alu 5 149 0 9 1400 439 311 17 106 chr4 106943525 106943705 -48686415 + RSINE1 SINE B4 2 165 0 9 1400 231 288 151 5 chr4 106943818 106944017 -48686103 + L1MEf LINE L1 2351 2578 -3568 9 1400 354 251 177 79 chr4 106944361 106944564 -48685556 + ID_B1 SINE B4 2 224 0 9 1400 1022 118 46 17 chr4 106944694 106944867 -48685253 + B2_Mm2 SINE B2 4 181 -14 9 1400 750 260 18 81 chr4 106944892 106945114 -48685006 + ID_B1 SINE B4 1 208 -16 9 1400 324 0 0 0 chr4 106945115 106945151 -48684969 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1400 492 18 0 0 chr4 106945151 106945207 -48684913 + (GA)n Simple_repeat Simple_repeat 1 57 0 9 1400 275 288 14 0 chr4 106945211 106945284 -48684836 + ID4 SINE ID 9 82 -1 9 1400 417 249 44 14 chr4 106945304 106945455 -48684665 + L1ME2 LINE L1 5953 6101 -61 9 1400 1258 54 0 0 chr4 106945913 106946060 -48684060 + B1_Mus2 SINE Alu 1 147 0 9 1400 607 383 83 33 chr4 106946786 106947269 -48682851 - LTR33A_ LTR ERVL -1 530 24 9 1400 241 294 80 48 chr4 106947351 106947476 -48682644 + MIRb SINE MIR 47 175 -93 9 1400 1194 75 0 0 chr4 106948230 106948377 -48681743 + B1_Mm SINE Alu 1 147 0 9 1400 649 244 7 7 chr4 106948398 106948534 -48681586 + B1_Mur1 SINE Alu 1 136 -13 9 1400 1094 204 33 24 chr4 106949076 106949287 -48680833 - B3 SINE B2 -3 213 1 9 1400 531 178 38 65 chr4 106949325 106949511 -48680609 - RMER17C LTR ERVK -133 277 97 9 1400 459 195 25 22 chr4 106949517 106949638 -48680482 - B1F1 SINE Alu -2 118 3 9 1400 862 201 10 42 chr4 106950033 106950225 -48679895 + B2_Mm2 SINE B2 1 186 -9 9 1400 227 280 133 0 chr4 106951269 106951344 -48678776 + B4A SINE B4 7 91 -201 9 1400 372 97 0 0 chr4 106951379 106951441 -48678679 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1400 311 344 8 0 chr4 106951900 106952025 -48678095 - L1M5 LINE L1 -446 5678 5553 9 1400 23 0 0 0 chr4 106952030 106952053 -48678067 + AT_rich Low_complexity Low_complexity 1 23 0 9 1400 348 24 0 0 chr4 106954146 106954187 -48675933 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1400 303 256 60 0 chr4 106954187 106954320 -48675800 + ORR1B1-int LTR MaLR 614 754 -755 9 1400 1127 43 7 0 chr4 106954219 106954359 -48675761 + B1_Mm SINE Alu 7 147 0 9 1400 852 172 13 40 chr4 106954379 106954530 -48675590 + B1_Mur3 SINE Alu 3 149 0 9 1400 244 284 75 0 chr4 106954633 106954700 -48675420 - tRNA-Ala-GCY_ tRNA tRNA -2 73 2 9 1400 282 143 41 0 chr4 106954656 106954705 -48675415 - ID4 SINE ID -31 52 2 9 1401 992 96 74 0 chr4 106954837 106954972 -48675148 + B1_Mm SINE Alu 2 146 -1 9 1401 186 43 0 0 chr4 106955027 106955050 -48675070 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1401 244 272 12 36 chr4 106955093 106955177 -48674943 - ID2 SINE ID 0 83 2 9 1401 304 209 15 0 chr4 106955726 106955793 -48674327 + ID4 SINE ID 3 70 -13 1 1401 448 219 8 85 chr4 106955823 106955842 -48674278 - MT2B LTR ERVL -330 271 208 1 1401 797 31 0 0 chr4 106955842 106955939 -48674181 - B1_Mus1 SINE Alu -50 98 2 1 1401 448 219 8 85 chr4 106955939 106955953 -48674167 - MT2B LTR ERVL -330 207 152 1 1401 250 260 9 111 chr4 106956824 106956850 -48673270 + MT2B2 LTR ERVL 145 159 -425 1 1401 362 267 29 10 chr4 106956850 106956952 -48673168 + PB1D7 SINE Alu 3 106 -14 1 1401 1970 175 104 8 chr4 106957120 106957495 -48672625 + MTD LTR MaLR 1 411 -8 1 1401 331 284 115 36 chr4 106957580 106957719 -48672401 + L1M5 LINE L1 5581 5730 -394 1 1401 181 75 0 48 chr4 106957801 106957843 -48672277 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1401 984 101 43 0 chr4 106958010 106958148 -48671972 + B1_Mus2 SINE Alu 4 147 0 1 1401 214 245 19 0 chr4 106958320 106958373 -48671747 + RSINE1 SINE B4 5 58 -107 1 1401 489 198 73 28 chr4 106958425 106958534 -48671586 - PB1D10 SINE Alu -3 114 1 1 1401 844 336 75 5 chr4 106958537 106958593 -48671527 - LTR16A1 LTR ERVL -40 416 356 1 1401 2596 55 61 3 chr4 106958593 106958920 -48671200 + ORR1A1 LTR MaLR 1 346 0 1 1401 844 336 75 5 chr4 106958920 106959249 -48670871 - LTR16A1 LTR ERVL -101 355 5 1 1401 523 337 22 22 chr4 106959260 106959442 -48670678 + MER5A DNA MER1_type 8 189 0 1 1401 221 269 164 0 chr4 106959528 106959595 -48670525 - 7SLRNA srpRNA srpRNA -224 90 13 1 1401 294 308 67 48 chr4 106959618 106959826 -48670294 + HAL1b LINE L1 931 1142 -867 1 1401 438 304 34 21 chr4 106960060 106960189 -48669931 - B1F1 SINE Alu -22 126 1 1 1401 244 312 71 92 chr4 106960189 106960247 -48669873 - MT2B LTR ERVL -443 158 104 1 1401 277 303 15 0 chr4 106960321 106960387 -48669733 + ID4 SINE ID 1 67 -16 1 1401 1360 257 78 24 chr4 106960940 106961127 -48668993 - MTD LTR MaLR -15 404 192 1 1401 615 51 0 0 chr4 106961127 106961206 -48668914 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1401 1360 257 78 24 chr4 106961206 106961401 -48668719 - MTD LTR MaLR -228 191 2 1 1401 248 295 9 79 chr4 106961442 106961556 -48668564 + L2c LINE L2 3110 3215 -172 1 1401 1757 154 121 0 chr4 106961597 106961903 -48668217 + ORR1B2 LTR MaLR 1 343 -24 1 1401 193 321 83 19 chr4 106962525 106962633 -48667487 + MIRb SINE MIR 97 211 -57 1 1401 360 178 26 52 chr4 106962682 106962759 -48667361 - PB1D10 SINE Alu -3 114 40 1 1401 309 281 85 0 chr4 106962802 106962884 -48667236 + ID_B1 SINE B4 99 187 -37 1 1401 743 277 42 5 chr4 106962883 106963072 -48667048 - B3 SINE B2 -18 198 3 1 1401 186 43 0 0 chr4 106963073 106963096 -48667024 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1401 468 289 77 44 chr4 106963103 106963284 -48666836 - B3A SINE B2 -10 188 2 1 1401 517 194 127 24 chr4 106963291 106963413 -48666707 - B1_Mur1 SINE Alu -8 141 2 1 1401 236 320 13 39 chr4 106963346 106963424 -48666696 - B4 SINE B4 -136 156 81 1 1401 471 299 14 27 chr4 106963446 106963594 -48666526 + ID_B1 SINE B4 79 224 0 1 1401 181 314 104 39 chr4 106965327 106965509 -48664611 + L2 LINE L2 2664 2857 -562 1 1401 494 262 16 16 chr4 106965644 106965772 -48664348 + RSINE1 SINE B4 38 165 0 1 1401 716 203 78 0 chr4 106965816 106965944 -48664176 + B1_Mur2 SINE Alu 3 140 -9 1 1401 728 123 16 0 chr4 106965944 106966066 -48664054 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 1 1401 599 206 48 0 chr4 106967165 106967291 -48662829 + B1_Mus1 SINE Alu 2 133 -15 1 1401 245 328 81 8 chr4 106967312 106967435 -48662685 + L2 LINE L2 2761 2892 -527 1 1401 246 310 153 28 chr4 106967520 106967704 -48662416 - MIRb SINE MIR -68 208 4 1 1401 1341 68 0 0 chr4 106968389 106968566 -48661554 + (TCTCCC)n Simple_repeat Simple_repeat 1 177 0 1 1401 764 34 60 0 chr4 106968566 106968683 -48661437 + (CCCCCT)n Simple_repeat Simple_repeat 6 129 0 1 1401 519 17 0 0 chr4 106968689 106968749 -48661371 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 1 1401 809 188 8 0 chr4 106968749 106968882 -48661238 - B1_Mus1 SINE Alu -12 136 3 1 1401 244 234 0 0 chr4 106969088 106969135 -48660985 - MER5A DNA MER1_type -88 101 55 1 1401 208 222 22 0 chr4 106970085 106970130 -48659990 + CT-rich Low_complexity Low_complexity 1 46 0 1 1401 536 153 99 30 chr4 106970660 106970761 -48659359 - B1_Mur1 SINE Alu -8 141 34 1 1401 252 299 135 64 chr4 106970780 106970906 -48659214 - MIRm SINE MIR -59 149 16 1 1401 606 203 218 11 chr4 106970946 106971125 -48658995 + B3 SINE B2 1 216 0 1 1401 1209 55 0 14 chr4 106971145 106971293 -48658827 + B1_Mm SINE Alu 2 147 0 1 1401 246 304 16 87 chr4 106971309 106971435 -48658685 - MER45C DNA Tip100 -60 893 777 1 1401 402 381 81 59 chr4 106971542 106971815 -48658305 - MER45C DNA Tip100 -402 551 273 1 1401 270 352 47 76 chr4 106971856 106972028 -48658092 + B4 SINE B4 2 168 -124 1 1401 406 232 81 0 chr4 106971951 106972050 -48658070 + PB1D9 SINE Alu 6 112 -8 1 1401 353 293 106 57 chr4 106972036 106972177 -48657943 - MER45C DNA Tip100 -804 149 2 1 1401 385 341 49 26 chr4 106972596 106972861 -48657259 - L2b LINE L2 -178 3197 2927 1 1401 486 230 14 0 chr4 106973279 106973498 -48656622 + (TG)n Simple_repeat Simple_repeat 1 222 0 1 1401 582 215 0 7 chr4 106973512 106974057 -48656063 + (TG)n Simple_repeat Simple_repeat 1 540 0 1 1401 626 291 0 54 chr4 106974102 106974269 -48655851 - RSINE1 SINE B4 0 165 8 1 1401 34 24 0 0 chr4 106974347 106974388 -48655732 + AT_rich Low_complexity Low_complexity 1 41 0 1 1401 200 236 17 68 chr4 106974645 106974704 -48655416 - L4 LINE RTE -14 2015 1960 1 1401 464 227 157 41 chr4 106974979 106975126 -48654994 + RSINE1 SINE B4 2 165 0 1 1401 231 125 0 0 chr4 106975128 106975168 -48654952 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1401 387 0 0 0 chr4 106975266 106975309 -48654811 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1401 201 296 107 48 chr4 106975975 106976078 -48654042 + MIR3 SINE MIR 71 179 -29 1 1401 360 0 0 0 chr4 106976739 106976779 -48653341 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1401 793 261 0 0 chr4 106976780 106976933 -48653187 - B3A SINE B2 -44 154 2 1 1401 732 264 23 98 chr4 106976945 106977159 -48652961 - ID_B1 SINE B4 -1 223 26 1 1401 493 226 19 0 chr4 106977167 106977273 -48652847 - PB1D10 SINE Alu -7 110 3 1 1401 600 14 0 0 chr4 106977539 106977608 -48652512 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1401 269 340 170 7 chr4 106977613 106977883 -48652237 + L2b LINE L2 3045 3358 -17 1 1401 273 253 33 43 chr4 106979045 106979162 -48650958 - L2b LINE L2 -179 3208 3082 1 1401 442 198 42 30 chr4 106980131 106980237 -48649883 + B1_Mur1 SINE Alu 12 111 -6 1 1401 347 105 0 17 chr4 106980237 106980295 -48649825 + (GGA)n Simple_repeat Simple_repeat 1 57 0 1 1401 993 134 7 0 chr4 106980364 106980513 -48649607 - B1_Mur4 SINE Alu 0 150 1 1 1401 675 273 50 0 chr4 106980545 106980706 -48649414 - B3 SINE B2 -41 175 7 1 1401 370 198 21 10 chr4 106980712 106980809 -48649311 + CT-rich Low_complexity Low_complexity 2 99 0 1 1401 375 23 0 0 chr4 106980852 106980896 -48649224 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1401 233 329 25 0 chr4 106980914 106980993 -48649127 + ID4_ SINE ID 3 83 0 1 1401 1170 289 107 10 chr4 106981123 106981636 -48648484 - L1MC1 LINE L1 -389 5944 5382 1 1401 2737 81 41 48 chr4 106981665 106982079 -48648041 - RLTR10A LTR ERVK 0 411 1 1 1401 296 247 0 162 chr4 106982096 106982152 -48647968 - Tigger5 DNA MER2_type -26 2380 2330 1 1401 723 191 30 15 chr4 106982152 106982285 -48647835 + B1_Mus2 SINE Alu 5 139 -8 1 1401 315 65 0 0 chr4 106982290 106982336 -48647784 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 1401 296 247 0 162 chr4 106982336 106982384 -48647736 - Tigger5 DNA MER2_type -77 2329 2288 1 1401 375 170 167 20 chr4 106982457 106982559 -48647561 - L1MC1 LINE L1 -1659 4487 4371 1 1401 1462 213 45 58 chr4 106982588 106982947 -48647173 + MTE2b LTR MaLR 19 372 -7 1 1401 314 281 0 0 chr4 106982947 106983029 -48647091 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1401 230 229 206 10 chr4 106983313 106983410 -48646710 - PB1D7 SINE Alu -2 118 3 1 1401 581 225 116 0 chr4 106983410 106983482 -48646638 - ID SINE ID -136 88 1 1 1401 396 304 0 21 chr4 106983678 106983772 -48646348 + PB1D10 SINE Alu 13 104 -13 1 1401 270 336 36 22 chr4 106983813 106983950 -48646170 - LTR16E2 LTR ERVL -405 163 25 1 1401 346 192 0 52 chr4 106983959 106984036 -48646084 + B2_Mm2 SINE B2 1 73 -122 1 1401 1297 107 79 0 chr4 106984013 106984228 -48645892 - RMER6B LTR ERVK -229 232 1 1 1401 282 106 0 0 chr4 106984599 106984646 -48645474 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1401 477 234 18 27 chr4 106984768 106984878 -48645242 + PB1D7 SINE Alu 2 110 -10 1 1401 320 183 77 106 chr4 106984823 106984927 -48645193 - B1_Mur2 SINE Alu -47 102 2 1 1401 427 271 34 9 chr4 106985139 106985250 -48644870 + B4A SINE B4 1 126 -166 1 1401 234 309 20 30 chr4 106985238 106985338 -48644782 - MTD LTR MaLR -260 159 61 1 1401 979 190 101 0 chr4 106985262 106985529 -48644591 + MTD LTR MaLR 50 384 -37 1 1401 1286 66 42 37 chr4 106985886 106986076 -48644044 + B2_Mm2 SINE B2 5 195 0 1 1401 376 266 243 11 chr4 106987193 106987377 -48642743 - MIRb SINE MIR -9 259 33 1 1401 693 244 97 24 chr4 106987503 106987709 -48642411 - ID_B1 SINE B4 0 224 4 1 1401 368 291 104 42 chr4 106987735 106987947 -48642173 - L1MEc LINE L1 -5905 495 271 1 1401 343 240 70 0 chr4 106988056 106988156 -48641964 + RSINE1 SINE B4 2 108 -57 1 1401 372 242 124 21 chr4 106988195 106988292 -48641828 - B1_Mur4 SINE Alu -43 107 1 1 1401 613 273 55 50 chr4 106988671 106988891 -48641229 - MIR SINE MIR -14 248 28 1 1401 389 271 78 65 chr4 106988985 106989139 -48640981 + B3A SINE B2 26 181 -17 1 1401 467 255 219 45 chr4 106990274 106990520 -48639600 + B4A SINE B4 2 290 -2 1 1401 281 235 15 0 chr4 106990533 106990601 -48639519 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1401 185 361 0 0 chr4 106990977 106991038 -48639082 - L4 LINE RTE -238 1791 1731 1 1401 247 179 89 0 chr4 106991240 106991296 -48638824 - B1F SINE Alu -62 87 27 1 1401 285 273 0 15 chr4 106991361 106991428 -48638692 - ID4_ SINE ID -14 69 4 1 1401 1105 50 0 14 chr4 106992272 106992414 -48637706 - B1_Mus2 SINE Alu -2 145 6 1 1401 288 81 0 0 chr4 106992690 106992727 -48637393 - tRNA-Glu-GAG_ tRNA tRNA -38 37 1 1 1401 529 241 0 0 chr4 106993158 106993266 -48636854 + PB1D10 SINE Alu 7 114 -3 1 1401 7722 144 92 104 chr4 106993707 106994679 -48635441 + ORR1A4-int LTR MaLR 1 962 -1001 1 1401 1220 41 0 14 chr4 106994679 106994826 -48635294 + B1_Mus1 SINE Alu 2 146 -2 1 1401 7722 115 51 152 chr4 106994826 106995916 -48634204 + ORR1A4-int LTR MaLR 963 1963 0 1 1401 2084 129 12 9 chr4 106995916 106996244 -48633876 + ORR1A4 LTR MaLR 1 329 0 1 1401 622 213 69 94 chr4 106996278 106996480 -48633640 + B3A SINE B2 2 198 0 1 1401 207 0 0 0 chr4 106996502 106996525 -48633595 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1401 1230 48 14 0 chr4 106996535 106996682 -48633438 + B1_Mur3 SINE Alu 1 149 0 1 1401 208 147 0 0 chr4 106996682 106996716 -48633404 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1401 687 186 31 8 chr4 106997204 106997334 -48632786 - B1_Mus1 SINE Alu 0 148 16 1 1401 597 64 0 0 chr4 106998445 106998523 -48631597 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 1 1401 351 279 23 0 chr4 106998523 106998609 -48631511 - B1F1 SINE Alu -10 139 52 1 1401 21 57 0 0 chr4 106998773 106998808 -48631312 + AT_rich Low_complexity Low_complexity 1 35 0 1 1401 759 147 17 8 chr4 106998842 106998959 -48631161 - B1_Mur3 SINE Alu -9 140 23 1 1401 1341 88 22 0 chr4 106998965 106999147 -48630973 - B2_Mm2 SINE B2 -8 187 2 1 1401 792 0 0 0 chr4 106999157 106999245 -48630875 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 1 1401 971 59 0 166 chr4 106999248 106999411 -48630709 - B1_Mur3 SINE Alu -13 136 1 1 1401 325 239 108 11 chr4 106999617 106999710 -48630410 - PB1D7 SINE Alu -1 119 18 1 1401 23 33 0 0 chr4 107001133 107001163 -48628957 + AT_rich Low_complexity Low_complexity 1 30 0 1 1401 284 281 8 102 chr4 107001188 107001315 -48628805 + RSINE1 SINE B4 43 157 -8 2 1401 578 300 7 0 chr4 107001322 107001462 -48628658 - ID_B1 SINE B4 -4 220 80 3 1401 504 186 24 81 chr4 107001532 107001655 -48628465 + PB1D10 SINE Alu 1 116 -1 4 1401 22 0 0 0 chr4 107001656 107001678 -48628442 + AT_rich Low_complexity Low_complexity 1 22 0 5 1401 278 226 0 0 chr4 107002013 107002066 -48628054 - ID_B1 SINE B4 -91 133 81 6 1401 269 240 100 62 chr4 107002099 107002179 -48627941 - B1F SINE Alu -66 83 1 7 1401 909 185 60 22 chr4 107002324 107002506 -48627614 + B2_Mm2 SINE B2 1 189 -6 8 1401 456 19 0 0 chr4 107002632 107002685 -48627435 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1401 885 147 0 27 chr4 107002688 107002835 -48627285 - B1_Mus1 SINE Alu -1 147 5 1 1401 6230 68 6 1 chr4 107003102 107004331 -48625789 - L1_Mus2 LINE L1 -261 6305 5072 1 1401 1623 48 10 0 chr4 107004331 107004540 -48625580 + L1_Mus2 LINE L1 6356 6566 0 1 1401 715 232 19 0 chr4 107004897 107005052 -48625068 - RSINE1 SINE B4 -4 161 4 1 1401 208 0 62 0 chr4 107005176 107005208 -48624912 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1401 1181 81 0 0 chr4 107005210 107005358 -48624762 - B1_Mus1 SINE Alu 0 148 1 1 1401 1507 87 0 5 chr4 107005431 107005627 -48624493 + B2_Mm2 SINE B2 1 195 0 1 1401 4323 61 33 7 chr4 107005683 107006229 -48623891 - LTRIS2 LTR ERV1 0 564 5 1 1401 1008 178 12 0 chr4 107006233 107006402 -48623718 - B3 SINE B2 0 216 46 1 1401 710 236 73 5 chr4 107006526 107006718 -48623402 - B3 SINE B2 -10 206 2 1 1401 1394 68 13 7 chr4 107006757 107006953 -48623167 - B2_Mm2 SINE B2 -3 213 1 1 1401 207 88 0 0 chr4 107007148 107007182 -48622938 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1401 1208 61 0 0 chr4 107007184 107007331 -48622789 - B1_Mus2 SINE Alu 0 147 1 2 1401 626 241 87 60 chr4 107007339 107007524 -48622596 - B3A SINE B2 -1 197 8 2 1401 498 271 8 33 chr4 107007549 107007671 -48622449 - ID_B1 SINE B4 -1 223 105 2 1401 943 215 47 17 chr4 107007767 107007999 -48622121 + B4A SINE B4 3 241 -51 2 1401 905 167 149 46 chr4 107008465 107008660 -48621460 + B3 SINE B2 1 215 -1 2 1401 1203 229 97 16 chr4 107009480 107009799 -48620321 + ORR1D2 LTR MaLR 22 366 -4 2 1401 379 269 129 9 chr4 107010150 107010266 -48619854 + RSINE1 SINE B4 4 133 -32 2 1401 745 278 157 11 chr4 107010746 107011033 -48619087 + MER2 DNA MER2_type 10 338 -7 2 1401 889 176 150 0 chr4 107011172 107011359 -48618761 - B3 SINE B2 0 216 2 2 1401 1159 62 0 7 chr4 107011578 107011725 -48618395 + B1_Mus2 SINE Alu 2 147 0 3 1401 299 234 0 49 chr4 107011981 107012062 -48618058 - B4A SINE B4 0 292 216 3 1401 853 147 28 0 chr4 107012085 107012228 -48617892 - B1_Mus2 SINE Alu 0 147 1 3 1401 231 233 0 0 chr4 107012600 107012643 -48617477 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 3 1401 1048 178 57 10 chr4 107012644 107012837 -48617283 - B3 SINE B2 -14 202 1 3 1401 1035 118 20 0 chr4 107013186 107013339 -48616781 + B2_Mm2 SINE B2 26 181 -14 3 1401 655 96 67 0 chr4 107013407 107013511 -48616609 + B2_Mm2 SINE B2 83 193 -2 3 1401 304 207 18 26 chr4 107014325 107014439 -48615681 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1401 360 244 35 70 chr4 107014877 107015011 -48615109 + RSINE1 SINE B4 16 134 -31 3 1401 185 256 87 65 chr4 107015055 107015147 -48614973 + MIRc SINE MIR 58 155 -113 3 1401 288 333 65 3 chr4 107015185 107015283 -48614837 - PB1D10 SINE Alu -30 119 15 4 1401 252 358 35 112 chr4 107015207 107015377 -48614743 - ID_B1 SINE B4 -49 175 19 4 1401 437 281 29 29 chr4 107015380 107015519 -48614601 - ID_B1 SINE B4 -1 223 85 4 1401 838 170 0 41 chr4 107015567 107015714 -48614406 - B1_Mur2 SINE Alu -7 142 2 4 1401 838 227 38 28 chr4 107015722 107015935 -48614185 - B3 SINE B2 0 216 2 4 1401 284 346 97 57 chr4 107015937 107016164 -48613956 - MIR SINE MIR -11 251 5 4 1401 206 364 0 0 chr4 107016167 107016222 -48613898 + MIRb SINE MIR 206 260 -8 4 1401 191 36 0 35 chr4 107016319 107016348 -48613772 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1401 222 241 36 18 chr4 107016992 107017047 -48613073 - L2c LINE L2 -2 3385 3330 4 1401 509 312 0 0 chr4 107017858 107018015 -48612105 - RSINE1 SINE B4 -7 158 2 4 1401 826 156 0 0 chr4 107018213 107018341 -48611779 + B1_Mus1 SINE Alu 1 128 -20 5 1401 316 301 12 12 chr4 107018336 107018420 -48611700 + B4A SINE B4 150 233 -59 5 1401 398 20 20 0 chr4 107018483 107018534 -48611586 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1401 324 0 0 0 chr4 107018534 107018569 -48611551 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1401 392 263 148 31 chr4 107018616 107018812 -48611308 + ID_B1 SINE B4 1 219 -5 5 1401 3169 46 13 10 chr4 107018917 107019312 -48610808 - MTA_Mm LTR MaLR 0 396 1 5 1401 645 278 0 8 chr4 107019358 107019492 -48610628 + RSINE1 SINE B4 8 140 -25 5 1401 396 0 0 0 chr4 107019503 107019547 -48610573 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1401 1258 28 0 0 chr4 107019574 107019719 -48610401 + B1_Mus2 SINE Alu 1 145 -2 5 1401 190 0 67 0 chr4 107019719 107019749 -48610371 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1401 195 42 0 0 chr4 107020053 107020077 -48610043 + (ACCTG)n Simple_repeat Simple_repeat 3 26 0 6 1401 451 321 6 7 chr4 107020663 107020802 -48609318 + B1F1 SINE Alu 1 138 -11 6 1401 709 229 135 83 chr4 107020816 107021082 -48609038 + B4 SINE B4 5 284 -8 6 1401 180 299 79 93 chr4 107021572 107021712 -48608408 - MIR3 SINE MIR -26 182 45 6 1401 191 342 27 0 chr4 107022606 107022679 -48607441 + MIRb SINE MIR 113 187 -81 6 1401 1227 61 0 0 chr4 107022736 107022883 -48607237 - B1_Mus2 SINE Alu 0 147 1 6 1401 595 232 12 202 chr4 107023566 107023809 -48606311 - ID_B1 SINE B4 -5 219 23 6 1401 249 301 107 23 chr4 107024300 107024499 -48605621 + L2b LINE L2 3154 3374 -13 6 1401 1218 22 0 0 chr4 107024944 107025082 -48605038 + B1_Mus2 SINE Alu 2 139 -8 6 1401 351 0 0 0 chr4 107025082 107025121 -48604999 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1401 692 346 87 46 chr4 107025681 107026096 -48604024 - MLT1F2 LTR MaLR -77 483 52 7 1401 272 222 188 20 chr4 107026177 107026278 -48603842 - Charlie7 DNA MER1_type -2455 157 40 7 1401 369 75 0 0 chr4 107027603 107027656 -48602464 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 7 1401 1178 61 0 7 chr4 107027668 107027816 -48602304 - B1_Mm SINE Alu 0 147 1 7 1401 585 218 0 0 chr4 107028187 107028357 -48601763 + (TG)n Simple_repeat Simple_repeat 1 170 0 7 1401 527 308 25 12 chr4 107028357 107028518 -48601602 - RSINE1 SINE B4 0 165 3 7 1401 198 103 0 0 chr4 107028647 107028676 -48601444 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1401 652 238 16 0 chr4 107028685 107028811 -48601309 + B1_Mur1 SINE Alu 21 148 -1 7 1401 241 263 18 0 chr4 107029317 107029374 -48600746 + RMER15 LTR ERVL 425 482 -93 7 1401 936 90 15 15 chr4 107029417 107029552 -48600568 - B1_Mus1 SINE Alu -1 147 13 7 1401 414 0 0 0 chr4 107029552 107029598 -48600522 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1401 307 179 36 0 chr4 107029617 107029673 -48600447 + MTEa LTR MaLR 318 375 -4 8 1401 477 259 55 9 chr4 107030075 107030184 -48599936 - ETnERV2-int LTR ERVK -210 7196 7083 8 1401 414 169 0 0 chr4 107030192 107030281 -48599839 + L1Md_F2 LINE L1 6494 6582 0 8 1401 532 12 56 73 chr4 107030405 107030584 -48599536 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 8 1401 522 28 60 64 chr4 107030634 107030904 -48599216 + (CACAC)n Simple_repeat Simple_repeat 1 269 0 8 1401 1700 196 205 24 chr4 107031016 107031485 -48598635 - RMER15 LTR ERVL 0 575 22 8 1401 936 315 25 25 chr4 107031609 107031895 -48598225 - B4A SINE B4 -6 286 1 8 1401 207 0 0 0 chr4 107032185 107032208 -48597912 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1401 279 141 75 45 chr4 107032521 107032588 -48597532 + PB1 SINE Alu 41 109 -18 8 1401 1439 92 0 5 chr4 107032678 107032874 -48597246 + B2_Mm2 SINE B2 1 195 0 8 1401 1159 54 20 0 chr4 107032886 107033033 -48597087 + B1_Mur4 SINE Alu 1 150 0 9 1401 734 130 411 0 chr4 107033079 107033225 -48596895 - B3 SINE B2 -10 206 1 9 1401 241 275 66 38 chr4 107033331 107033437 -48596683 + MIRm SINE MIR 168 276 0 9 1401 195 42 0 0 chr4 107033551 107033575 -48596545 + (CAGG)n Simple_repeat Simple_repeat 4 27 0 9 1401 365 338 87 19 chr4 107033869 107034077 -48596043 - MLT1I LTR MaLR -62 349 128 9 1401 206 127 0 52 chr4 107034137 107034195 -48595925 + T-rich Low_complexity Low_complexity 4 58 0 9 1401 1016 82 74 0 chr4 107034197 107034332 -48595788 - B1_Mus2 SINE Alu -1 146 2 9 1401 1339 91 43 0 chr4 107034343 107034530 -48595590 - B2_Mm2 SINE B2 0 195 1 9 1401 637 122 103 0 chr4 107035271 107035378 -48594742 + B3 SINE B2 2 119 -97 9 1401 24 0 0 0 chr4 107036048 107036072 -48594048 + AT_rich Low_complexity Low_complexity 1 24 0 9 1401 984 214 14 29 chr4 107036252 107036459 -48593661 - B3 SINE B2 -11 205 2 1 1401 185 186 0 85 chr4 107036830 107036877 -48593243 - L4 LINE RTE -259 1770 1728 1 1401 190 274 103 35 chr4 107037350 107037437 -48592683 - L2a LINE L2 -1 3425 3333 1 1401 1446 22 20 76 chr4 107037479 107037677 -48592443 - B2_Mm1a SINE B2 -6 187 1 1 1401 1293 87 12 0 chr4 107037680 107037853 -48592267 - B2_Mm1t SINE B2 -18 175 1 1 1401 227 330 87 51 chr4 107038045 107038240 -48591880 - MLT1J LTR MaLR -80 432 231 1 1401 1218 48 0 0 chr4 107038250 107038396 -48591724 + B1_Mm SINE Alu 2 147 0 1 1401 826 154 35 0 chr4 107038419 107038562 -48591558 + B1_Mur4 SINE Alu 1 148 -2 1 1401 180 0 0 0 chr4 107038562 107038582 -48591538 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1401 591 241 98 37 chr4 107038970 107039134 -48590986 - B4 SINE B4 0 292 119 1 1401 403 150 0 86 chr4 107039141 107039316 -48590804 + (CCCTG)n Simple_repeat Simple_repeat 5 164 0 1 1401 454 271 37 9 chr4 107039408 107039516 -48590604 - ID_B1 SINE B4 -1 223 113 1 1401 217 226 0 19 chr4 107039647 107039701 -48590419 - MIRc SINE MIR -109 159 107 1 1401 1523 58 16 0 chr4 107039865 107040055 -48590065 + B2_Mm2 SINE B2 2 194 -1 1 1401 494 218 104 15 chr4 107040165 107040300 -48589820 + B3 SINE B2 1 147 -69 1 1401 312 194 9 114 chr4 107041664 107041769 -48588351 + PB1D10 SINE Alu 24 117 0 1 1401 898 117 189 27 chr4 107041830 107042015 -48588105 - B3 SINE B2 -1 215 1 1 1401 333 315 9 9 chr4 107042114 107042223 -48587897 + PB1D10 SINE Alu 9 117 0 1 1401 646 248 191 0 chr4 107042404 107042634 -48587486 + B4A SINE B4 1 274 -18 1 1401 490 318 14 93 chr4 107043560 107043775 -48586345 + B3A SINE B2 1 198 0 1 1401 598 214 41 35 chr4 107044008 107044153 -48585967 + B1F1 SINE Alu 4 149 0 1 1401 374 170 75 0 chr4 107044399 107044493 -48585627 + L1MB3 LINE L1 6081 6181 -2 1 1401 361 350 58 0 chr4 107044560 107044663 -48585457 - PB1D10 SINE Alu -5 112 4 1 1401 235 276 0 33 chr4 107044611 107044671 -48585449 - B4 SINE B4 -152 140 83 1 1401 489 199 0 238 chr4 107045152 107045324 -48584796 - B1_Mur4 SINE Alu 0 150 19 1 1401 307 243 105 137 chr4 107045215 107045339 -48584781 - ID_B1 SINE B4 -26 198 79 1 1401 253 333 106 7 chr4 107045396 107045538 -48584582 - L2b LINE L2 -169 3206 3051 1 1401 1216 48 7 0 chr4 107046187 107046334 -48583786 + B1_Mus1 SINE Alu 1 148 0 1 1401 258 176 0 0 chr4 107046334 107046385 -48583735 + A-rich Low_complexity Low_complexity 1 51 0 1 1401 389 278 18 36 chr4 107046415 107046527 -48583593 + ID_B1 SINE B4 115 224 0 1 1401 228 318 135 9 chr4 107047312 107047423 -48582697 + LTR87 LTR ERVL? 339 463 -161 1 1401 288 0 0 0 chr4 107048331 107048363 -48581757 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1401 975 264 73 22 chr4 107048381 107048656 -48581464 - B4A SINE B4 0 292 4 1 1401 364 198 198 0 chr4 107049384 107049480 -48580640 - PB1D10 SINE Alu -2 115 1 1 1401 661 211 35 14 chr4 107049701 107049759 -48580361 - B1_Mur2 SINE Alu -1 148 91 1 1401 330 45 0 0 chr4 107049759 107049803 -48580317 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1401 661 211 35 14 chr4 107049803 107049888 -48580232 - B1_Mur2 SINE Alu -59 90 2 1 1401 1197 68 0 0 chr4 107049908 107050054 -48580066 - B1_Mus2 SINE Alu 0 147 2 1 1401 1283 27 0 0 chr4 107050209 107050357 -48579763 - B1_Mus1 SINE Alu 0 148 1 1 1401 675 197 15 0 chr4 107050506 107050643 -48579477 - B1_Mur3 SINE Alu -9 140 2 1 1401 301 275 102 31 chr4 107050652 107050838 -48579282 - B3A SINE B2 0 216 1 1 1401 1253 41 0 7 chr4 107051387 107051535 -48578585 - B1_Mus2 SINE Alu 0 147 1 1 1401 310 263 227 28 chr4 107051773 107051949 -48578171 + MIR SINE MIR 34 244 -24 1 1401 268 326 92 0 chr4 107051979 107052077 -48578043 + Tigger7 DNA MER2_type 10 116 -2375 1 1401 470 221 197 20 chr4 107052095 107052247 -48577873 + Tigger7 DNA MER2_type 2306 2484 -7 1 1401 24 0 0 0 chr4 107052434 107052458 -48577662 + AT_rich Low_complexity Low_complexity 1 24 0 1 1401 799 238 117 32 chr4 107052466 107052775 -48577345 - L1MA8 LINE L1 -135 6156 5822 1 1401 343 186 0 17 chr4 107052944 107053004 -48577116 - RSINE1 SINE B4 -96 69 11 1 1401 210 188 62 0 chr4 107053025 107053073 -48577047 - ID4_ SINE ID -3 80 30 1 1401 29 0 0 0 chr4 107053391 107053420 -48576700 + AT_rich Low_complexity Low_complexity 1 29 0 1 1401 489 281 32 16 chr4 107053743 107053866 -48576254 - RSINE1 SINE B4 -34 131 7 1 1401 417 335 174 8 chr4 107053870 107054123 -48575997 - Tigger6b DNA MER2_type -1287 310 16 1 1401 180 0 0 0 chr4 107054728 107054748 -48575372 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 1 1401 24 32 0 0 chr4 107054896 107054927 -48575193 + AT_rich Low_complexity Low_complexity 1 31 0 1 1401 672 188 112 8 chr4 107054927 107055061 -48575059 + B1_Mus1 SINE Alu 1 148 0 1 1401 1264 40 0 0 chr4 107055134 107055282 -48574838 - B1_Mus1 SINE Alu 0 148 1 1 1401 525 228 7 80 chr4 107055309 107055447 -48574673 - RSINE1 SINE B4 -35 130 3 1 1401 182 268 0 0 chr4 107056363 107056404 -48573716 - L3 LINE CR1 -4310 179 139 1 1401 288 77 0 0 chr4 107056689 107056728 -48573392 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1401 562 214 0 10 chr4 107056752 107056851 -48573269 - B3 SINE B2 -95 121 24 1 1401 950 227 30 15 chr4 107056997 107057198 -48572922 - B3 SINE B2 -12 204 1 1 1401 1188 126 130 10 chr4 107057593 107057793 -48572327 + URR1B DNA MER1_type 2 225 0 1 1401 418 284 0 0 chr4 107057919 107058014 -48572106 - PB1 SINE Alu -26 101 7 1 1401 459 230 22 32 chr4 107058343 107058462 -48571658 - PB1D10 SINE Alu -2 125 1 1 1401 182 292 13 89 chr4 107059625 107059704 -48570416 - MIRm SINE MIR -202 74 2 1 1401 1098 63 21 0 chr4 107060628 107060771 -48569349 - B1_Mus2 SINE Alu 0 147 2 1 1401 29 60 0 0 chr4 107060781 107060831 -48569289 + AT_rich Low_complexity Low_complexity 1 50 0 1 1401 1267 34 0 0 chr4 107060838 107060985 -48569135 + B1_Mm SINE Alu 1 147 0 1 1401 248 143 329 0 chr4 107061083 107061153 -48568967 - B1_Mur3 SINE Alu -8 141 49 1 1401 713 282 65 72 chr4 107061191 107061470 -48568650 - MER44B DNA MER2_type -3 547 271 1 1401 404 283 53 0 chr4 107062495 107062608 -48567512 + RSINE1 SINE B4 43 161 -4 1 1401 409 354 70 52 chr4 107063720 107064472 -48565648 - L2a LINE L2 -180 3246 2428 1 1401 192 231 331 26 chr4 107064500 107064651 -48565469 - L2a LINE L2 -1064 2355 2159 1 1401 243 150 0 0 chr4 107064655 107064715 -48565405 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1401 1282 27 0 0 chr4 107064715 107064861 -48565259 - B1_Mus2 SINE Alu 0 147 2 1 1401 262 282 175 16 chr4 107064864 107064990 -48565130 - B1F SINE Alu 0 149 4 1 1401 225 325 72 53 chr4 107065034 107065242 -48564878 - L2a LINE L2 -1475 1944 1733 1 1401 363 289 99 23 chr4 107066181 107066312 -48563808 + PB1D10 SINE Alu 7 147 -2 1 1401 462 198 68 45 chr4 107067099 107067231 -48562889 - B1F1 SINE Alu 0 149 15 1 1401 229 291 57 108 chr4 107067105 107067263 -48562857 - B4 SINE B4 -69 223 74 1 1401 294 298 44 95 chr4 107068993 107069130 -48560990 + YREP_Mm Unknown Unknown 157 286 -1526 1 1401 494 248 9 79 chr4 107069016 107069130 -48560990 - ID_B1 SINE B4 -7 217 112 1 1401 372 328 29 43 chr4 107069130 107069156 -48560964 - B1F SINE Alu -7 142 5 1 1401 486 0 0 0 chr4 107069159 107069213 -48560907 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1401 363 202 178 20 chr4 107069226 107069327 -48560793 - PB1D9 SINE Alu -2 118 2 1 1401 202 229 0 0 chr4 107069590 107069638 -48560482 + T-rich Low_complexity Low_complexity 1 48 0 1 1401 297 267 28 37 chr4 107069667 107069776 -48560344 - PB1D10 SINE Alu -7 110 3 1 1401 396 0 0 0 chr4 107070133 107070177 -48559943 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1401 556 323 146 21 chr4 107070710 107071045 -48559075 - Charlie4a DNA MER1_type -96 412 36 1 1401 973 131 0 7 chr4 107072332 107072470 -48557650 - B1_Mur4 SINE Alu -13 137 1 1 1401 525 298 24 8 chr4 107072519 107072644 -48557476 + B1_Mur2 SINE Alu 2 128 -21 1 1401 558 0 0 0 chr4 107072645 107072707 -48557413 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 1401 364 348 22 7 chr4 107072710 107072846 -48557274 + B1F1 SINE Alu 6 143 -6 1 1401 315 178 12 110 chr4 107072857 107072939 -48557181 + ID4 SINE ID 2 75 -8 1 1401 186 299 96 67 chr4 107073136 107073240 -48556880 - L2c LINE L2 0 3387 3281 1 1401 541 274 24 16 chr4 107073339 107073465 -48556655 - RSINE1 SINE B4 -37 128 2 1 1401 616 306 63 123 chr4 107073611 107073844 -48556276 - MTEa LTR MaLR -50 329 92 1 1401 4318 121 75 10 chr4 107073844 107074554 -48555566 - RMER6A LTR ERVK 0 756 1 1 1401 616 306 63 123 chr4 107074554 107074670 -48555450 - MTEa LTR MaLR -288 91 1 1 1401 289 273 89 22 chr4 107074877 107074967 -48555153 - MIRc SINE MIR -171 97 2 1 1401 409 264 209 40 chr4 107075547 107075772 -48554348 + B4 SINE B4 16 278 -14 1 1401 254 296 28 0 chr4 107076148 107076219 -48553901 + MER20 DNA MER1_type 2 74 -145 1 1401 437 248 13 16 chr4 107076790 107076934 -48553186 - B3 SINE B2 -5 190 48 1 1401 323 333 34 87 chr4 107076997 107077204 -48552916 - MER46C DNA MER2_type -108 230 35 1 1401 423 0 0 0 chr4 107077208 107077255 -48552865 + (GGA)n Simple_repeat Simple_repeat 1 47 0 1 1401 1323 63 0 0 chr4 107077255 107077754 -48552366 + (TGG)n Simple_repeat Simple_repeat 1 499 0 2 1401 327 311 25 8 chr4 107077795 107077915 -48552205 - MER113 DNA MER1_type -213 308 187 2 1401 231 88 0 0 chr4 107078233 107078267 -48551853 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1401 238 224 146 27 chr4 107078290 107078400 -48551720 + Looper DNA PiggyBac 99 221 -1337 2 1401 792 159 14 14 chr4 107078411 107078551 -48551569 + B1_Mus1 SINE Alu 8 147 -1 2 1401 446 217 148 44 chr4 107078801 107078936 -48551184 + B1_Mur3 SINE Alu 1 149 0 2 1401 653 259 60 35 chr4 107078948 107079148 -48550972 - B3 SINE B2 -9 207 3 2 1401 185 0 40 0 chr4 107079159 107079184 -48550936 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 2 1401 1164 69 0 0 chr4 107079417 107079562 -48550558 - B1_Mus2 SINE Alu -2 145 1 2 1401 485 252 45 15 chr4 107079568 107079701 -48550419 - MER33 DNA MER1_type -168 156 20 2 1401 346 314 41 41 chr4 107079764 107079910 -48550210 + B1F SINE Alu 1 146 -3 2 1401 1117 200 19 0 chr4 107080021 107080226 -48549894 - B3 SINE B2 -7 209 1 2 1401 260 292 0 150 chr4 107080227 107080340 -48549780 + PB1D9 SINE Alu 15 110 -10 2 1401 1354 59 15 69 chr4 107080513 107080715 -48549405 - B2_Mm2 SINE B2 -4 191 1 2 1401 883 287 81 111 chr4 107080715 107081026 -48549094 + Looper DNA PiggyBac 775 1054 -504 2 1401 1530 72 0 5 chr4 107081026 107081222 -48548898 + B2_Mm2 SINE B2 1 195 0 2 1401 1236 48 7 0 chr4 107081224 107081370 -48548750 + B1_Mus1 SINE Alu 2 148 0 2 1401 883 287 81 111 chr4 107081370 107081670 -48548450 + Looper DNA PiggyBac 1055 1371 -187 2 1401 548 229 53 0 chr4 107081670 107081801 -48548319 + B1_Mur1 SINE Alu 1 138 -11 2 1401 245 241 136 50 chr4 107082173 107082313 -48547807 + RLTR21 LTR ERVK 589 740 -832 2 1401 287 184 98 54 chr4 107082750 107082842 -48547278 + HAL1 LINE L1 840 935 -1572 2 1401 325 241 109 68 chr4 107083460 107083607 -48546513 - RSINE1 SINE B4 -9 156 4 2 1401 230 314 107 80 chr4 107084684 107084871 -48545249 - MIRb SINE MIR -73 195 4 2 1401 318 211 11 126 chr4 107085104 107085191 -48544929 - MIRc SINE MIR -173 95 15 2 1401 757 216 14 0 chr4 107085393 107085532 -48544588 - B1_Mur2 SINE Alu -8 141 1 2 1402 1205 42 7 0 chr4 107085842 107085986 -48544134 + B1_Mus2 SINE Alu 2 146 -1 2 1402 750 121 0 0 chr4 107089123 107089239 -48540881 + (TC)n Simple_repeat Simple_repeat 2 117 0 2 1402 332 234 170 0 chr4 107091088 107091182 -48538938 - PB1D10 SINE Alu 0 117 8 2 1402 712 196 70 19 chr4 107091107 107091263 -48538857 - ID_B1 SINE B4 -56 168 5 2 1402 305 236 32 53 chr4 107091647 107091741 -48538379 + L1MEg LINE L1 1912 2003 -4239 2 1402 769 164 8 38 chr4 107091749 107091882 -48538238 + B1_Mus2 SINE Alu 19 147 0 2 1402 240 305 73 0 chr4 107092385 107092467 -48537653 - B1F2 SINE Alu -16 133 46 2 1402 1105 83 0 27 chr4 107092480 107092665 -48537455 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1402 297 128 0 0 chr4 107092665 107092712 -48537408 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 2 1402 646 111 65 26 chr4 107092713 107092852 -48537268 - B1_Mus1 SINE Alu 0 150 10 2 1402 377 264 67 103 chr4 107093460 107093625 -48536495 + MT2B LTR ERVL 106 264 -337 2 1402 912 124 0 21 chr4 107093522 107093662 -48536458 + B1_Mus2 SINE Alu 10 146 -1 2 1402 225 242 61 0 chr4 107093837 107093903 -48536217 + L1MEg LINE L1 3014 3083 -3063 2 1402 254 215 92 0 chr4 107093960 107094025 -48536095 + L2c LINE L2 3273 3343 -44 2 1402 630 285 0 44 chr4 107095451 107095631 -48534489 - B3A SINE B2 -2 196 25 2 1402 260 206 95 0 chr4 107095669 107095732 -48534388 - ID4_ SINE ID -13 70 2 2 1402 594 257 272 9 chr4 107095764 107095992 -48534128 - B4 SINE B4 0 292 5 2 1402 369 292 31 0 chr4 107096003 107096099 -48534021 - B1F SINE Alu -8 141 43 2 1402 436 172 28 32 chr4 107096114 107096367 -48533753 + (TG)n Simple_repeat Simple_repeat 1 252 0 2 1402 466 277 55 55 chr4 107096369 107096533 -48533587 - RSINE1 SINE B4 0 165 2 2 1402 402 194 0 14 chr4 107096984 107097057 -48533063 - PB1D7 SINE Alu -7 113 42 2 1402 381 338 355 12 chr4 107097279 107097617 -48532503 - MLT1J LTR MaLR -29 483 30 2 1402 385 320 70 19 chr4 107097637 107097793 -48532327 + MIR3 SINE MIR 34 197 -11 2 1402 549 240 10 0 chr4 107097895 107097999 -48532121 + PB1 SINE Alu 9 113 -14 2 1402 1151 76 0 0 chr4 107098032 107098176 -48531944 - B1_Mus1 SINE Alu 0 148 5 2 1402 200 327 19 0 chr4 107099870 107099922 -48530198 + L2a LINE L2 3349 3401 -25 2 1402 910 272 35 20 chr4 107099932 107100187 -48529933 - B4A SINE B4 -32 260 2 2 1402 459 226 120 120 chr4 107100198 107100490 -48529630 - L1MD LINE L1 -1887 4259 3968 2 1402 204 97 0 0 chr4 107100608 107100639 -48529481 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1402 564 249 24 127 chr4 107100745 107100945 -48529175 - B4A SINE B4 -10 282 102 2 1402 871 62 0 0 chr4 107100945 107101058 -48529062 - B1_Mm SINE Alu -33 114 2 2 1402 564 249 24 127 chr4 107101058 107101087 -48529033 - B4A SINE B4 -10 101 78 2 1402 388 280 37 22 chr4 107101087 107101222 -48528898 + B4 SINE B4 1 137 -155 2 1402 1372 74 20 31 chr4 107101543 107101577 -48528543 - B2_Mm2 SINE B2 -1 194 162 2 1402 441 0 0 0 chr4 107101577 107101626 -48528494 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 1402 1372 74 20 31 chr4 107101626 107101786 -48528334 - B2_Mm2 SINE B2 -34 161 2 2 1402 1229 48 7 0 chr4 107101815 107101962 -48528158 - B1_Mus1 SINE Alu 0 148 1 2 1402 371 346 9 0 chr4 107101987 107102094 -48528026 - PB1D10 SINE Alu -4 113 6 2 1402 322 229 49 0 chr4 107102258 107102319 -48527801 - PB1 SINE Alu -19 108 45 2 1402 1437 68 6 16 chr4 107102420 107102621 -48527499 - B2_Mm1a SINE B2 -2 214 14 2 1402 396 292 199 4 chr4 107102626 107102877 -48527243 - L1M4 LINE L1 -1028 5118 4819 2 1402 471 184 184 0 chr4 107103486 107103595 -48526525 + RSINE1 SINE B4 4 132 -33 2 1402 237 347 17 174 chr4 107103625 107103803 -48526317 + RSINE1 SINE B4 3 152 -13 2 1402 1711 21 0 0 chr4 107103840 107104030 -48526090 - B2_Mm1a SINE B2 -2 191 2 2 1402 261 282 14 14 chr4 107104183 107104255 -48525865 + RCHARR1 DNA MER1_type 903 974 0 2 1402 678 145 10 17 chr4 107104260 107104396 -48525724 + B2_Mm2 SINE B2 2 137 -56 2 1402 1754 16 0 0 chr4 107104448 107104641 -48525479 - B2_Mm1t SINE B2 0 193 1 2 1402 1031 69 20 40 chr4 107104825 107104962 -48525158 + B1_Mus1 SINE Alu 1 136 -12 2 1402 1109 101 12 0 chr4 107104962 107105131 -48524989 + (GGGAGA)n Simple_repeat Simple_repeat 4 174 0 2 1402 1031 69 20 40 chr4 107105131 107105144 -48524976 + B1_Mus1 SINE Alu 137 148 0 2 1402 201 39 0 0 chr4 107105530 107105556 -48524564 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1402 180 0 0 0 chr4 107105570 107105590 -48524530 + (CAGAG)n Simple_repeat Simple_repeat 2 21 0 2 1402 963 54 132 0 chr4 107106120 107106249 -48523871 - B1_Mm SINE Alu 0 147 2 2 1402 21 36 0 0 chr4 107107052 107107080 -48523040 + GC_rich Low_complexity Low_complexity 1 28 0 2 1402 22 0 0 0 chr4 107107162 107107184 -48522936 + GC_rich Low_complexity Low_complexity 1 22 0 2 1402 231 133 0 0 chr4 107107200 107107245 -48522875 + (CGG)n Simple_repeat Simple_repeat 3 47 0 2 1402 21 0 0 0 chr4 107107306 107107327 -48522793 + GC_rich Low_complexity Low_complexity 1 21 0 2 1402 207 100 0 0 chr4 107108917 107108947 -48521173 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2 1402 190 246 0 39 chr4 107108981 107109045 -48521075 + MIR3 SINE MIR 109 167 -41 2 1402 21 0 0 0 chr4 107110958 107110979 -48519141 + AT_rich Low_complexity Low_complexity 1 21 0 2 1402 212 59 0 29 chr4 107111701 107111736 -48518384 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1402 260 211 55 27 chr4 107113615 107113688 -48516432 + MIR3 SINE MIR 112 186 -22 2 1402 197 407 33 28 chr4 107113838 107114053 -48516067 - MIR SINE MIR -7 255 40 2 1402 181 364 45 11 chr4 107114047 107114136 -48515984 - L4 LINE RTE -884 1145 1054 2 1402 636 293 68 21 chr4 107116541 107116733 -48513387 - B3 SINE B2 -6 210 10 2 1402 299 299 79 36 chr4 107116987 107117126 -48512994 + MIR SINE MIR 117 261 -1 2 1402 844 238 15 31 chr4 107117522 107117717 -48512403 - B3A SINE B2 -6 192 1 2 1402 355 352 35 0 chr4 107119338 107119480 -48510640 - MER3 DNA MER1_type -62 147 1 2 1402 251 245 0 0 chr4 107120863 107120916 -48509204 + ID4 SINE ID 29 81 -2 2 1402 226 325 23 98 chr4 107121434 107121608 -48508512 - MIRb SINE MIR -62 206 46 2 1402 356 335 27 54 chr4 107122334 107122558 -48507562 + LTR78 LTR ERV1 1020 1237 -67 2 1402 497 16 16 0 chr4 107123133 107123195 -48506925 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1402 489 198 78 35 chr4 107123198 107123313 -48506807 - RSINE1 SINE B4 -44 121 2 2 1402 326 286 105 0 chr4 107123386 107123491 -48506629 - PB1D10 SINE Alu 0 117 2 2 1402 251 325 84 42 chr4 107123516 107123683 -48506437 - L2a LINE L2 -8 3418 3245 2 1402 267 54 0 0 chr4 107123857 107123894 -48506226 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2 1402 327 198 80 62 chr4 107124021 107124134 -48505986 - MIR SINE MIR -56 206 92 2 1402 452 286 117 13 chr4 107124298 107124596 -48505524 - HAL1 LINE L1 -1089 1418 1090 2 1402 23 0 0 0 chr4 107125814 107125837 -48504283 + GC_rich Low_complexity Low_complexity 1 23 0 2 1402 274 275 0 0 chr4 107126766 107126835 -48503285 - Lx8 LINE L1 -172 7301 7233 2 1402 307 315 54 0 chr4 107126846 107126957 -48503163 - Lx8 LINE L1 -283 7190 7074 2 1402 1280 323 80 18 chr4 107126982 107127582 -48502538 - Lx8 LINE L1 -462 7011 6375 2 1402 3114 206 127 22 chr4 107127601 107128404 -48501716 + RCHARR1 DNA MER1_type 8 894 -80 2 1402 1019 173 103 20 chr4 107128406 107128601 -48501519 - B3 SINE B2 -4 212 2 3 1402 255 363 0 17 chr4 107128603 107128718 -48501402 + RCHARR1 DNA MER1_type 862 974 0 2 1402 1083 134 0 6 chr4 107129102 107129275 -48500845 - URR1A DNA MER1_type -1 225 54 3 1402 582 86 0 0 chr4 107129417 107129498 -48500622 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1402 207 304 54 31 chr4 107129692 107129821 -48500299 - MIR3 SINE MIR -23 185 54 3 1402 225 132 0 0 chr4 107130729 107130767 -48499353 + (CGAA)n Simple_repeat Simple_repeat 1 38 0 3 1402 539 229 266 17 chr4 107131350 107131523 -48498597 - B3 SINE B2 0 216 1 3 1402 307 272 54 0 chr4 107133707 107133799 -48496321 + MIR SINE MIR 64 160 -102 3 1402 3055 155 262 81 chr4 107135352 107136116 -48494004 + RMER19B LTR ERVK 1 902 0 3 1402 348 298 9 9 chr4 107136122 107136227 -48493893 + MIRc SINE MIR 94 198 -70 3 1402 629 337 150 21 chr4 107137976 107138619 -48491501 + L1MB7 LINE L1 5436 6168 -16 3 1402 510 219 19 0 chr4 107138629 107138734 -48491386 + PB1D10 SINE Alu 2 108 -9 3 1402 302 212 11 56 chr4 107138858 107138948 -48491172 - PB1D10 SINE Alu 0 117 32 3 1402 263 183 0 27 chr4 107139114 107139187 -48490933 + GA-rich Low_complexity Low_complexity 1 71 0 3 1402 1681 174 73 20 chr4 107139347 107139688 -48490432 - ORR1B2 LTR MaLR -8 359 1 3 1402 224 269 125 0 chr4 107139718 107139826 -48490294 + MIRc SINE MIR 15 133 -129 3 1402 488 328 78 13 chr4 107139872 107140104 -48490016 + MLT1A LTR MaLR 49 295 -79 3 1402 186 167 0 0 chr4 107140247 107140283 -48489837 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 3 1402 474 18 0 0 chr4 107142844 107142899 -48487221 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1402 201 94 0 0 chr4 107143051 107143083 -48487037 + (CCCTG)n Simple_repeat Simple_repeat 5 36 0 3 1402 189 262 91 15 chr4 107143869 107143935 -48486185 - MIRc SINE MIR -87 181 111 3 1402 402 262 171 12 chr4 107144336 107144506 -48485614 - RMER15 LTR ERVL -43 532 336 3 1402 194 254 127 0 chr4 107147607 107147670 -48482450 + L2c LINE L2 3133 3203 -184 3 1402 1432 74 11 0 chr4 107148596 107148785 -48481335 - B2_Mm1t SINE B2 -1 192 2 3 1402 314 298 75 19 chr4 107149837 107149943 -48480177 + MTEb LTR MaLR 266 377 -2 3 1402 219 246 108 14 chr4 107150004 107150078 -48480042 + MIR3 SINE MIR 109 189 -19 3 1402 261 242 0 16 chr4 107150864 107150927 -48479193 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1402 230 176 20 0 chr4 107150969 107151020 -48479100 + CT-rich Low_complexity Low_complexity 1 52 0 3 1402 299 262 239 18 chr4 107151020 107151129 -48478991 - B4 SINE B4 -75 217 85 3 1402 643 271 65 7 chr4 107151164 107151383 -48478737 - B4A SINE B4 -43 249 23 3 1402 371 179 131 0 chr4 107151387 107151471 -48478649 - B4 SINE B4 -196 96 2 3 1402 200 34 0 33 chr4 107151561 107151591 -48478529 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 3 1402 188 136 0 64 chr4 107152790 107152837 -48477283 + CT-rich Low_complexity Low_complexity 4 47 0 3 1402 22 0 0 0 chr4 107153596 107153618 -48476502 + AT_rich Low_complexity Low_complexity 1 22 0 3 1402 1301 247 27 116 chr4 107153858 107154298 -48475822 - MTD LTR MaLR -14 405 5 3 1402 1253 50 22 22 chr4 107154384 107154567 -48475553 + B2_Mm1t SINE B2 11 193 0 3 1402 234 176 0 0 chr4 107154568 107154619 -48475501 + A-rich Low_complexity Low_complexity 1 51 0 3 1402 339 231 113 57 chr4 107154747 107154871 -48475249 + 7SK RNA RNA 123 253 -78 3 1402 701 169 38 8 chr4 107154882 107155013 -48475107 + B1_Mur1 SINE Alu 2 136 -13 3 1402 243 0 0 0 chr4 107155013 107155040 -48475080 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1402 1203 270 83 133 chr4 107155042 107155819 -48474301 - MTD-int LTR MaLR -161 1419 132 3 1402 1426 65 49 0 chr4 107155819 107156004 -48474116 + B2_Mm2 SINE B2 2 195 0 3 1402 622 266 58 97 chr4 107156004 107156136 -48473984 - MTD-int LTR MaLR -1127 131 17 3 1402 873 291 129 22 chr4 107156165 107156530 -48473590 - MTD LTR MaLR -15 404 1 3 1402 682 255 28 42 chr4 107160058 107160271 -48469849 + B3 SINE B2 7 216 0 3 1402 1041 158 23 0 chr4 107160938 107161115 -48469005 - URR1A DNA MER1_type -1 225 45 3 1402 405 0 0 0 chr4 107161780 107161825 -48468295 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1402 3683 212 110 15 chr4 107162979 107163555 -48466565 - Lx9 LINE L1 -50 7594 6976 3 1402 225 0 0 0 chr4 107163555 107163580 -48466540 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1402 3683 213 40 18 chr4 107163580 107163934 -48466186 - Lx9 LINE L1 -669 6975 6603 3 1402 220 337 54 0 chr4 107165985 107166077 -48464043 + MIRm SINE MIR 180 276 0 3 1402 524 234 117 0 chr4 107166567 107166704 -48463416 - MTD LTR MaLR -265 154 2 3 1402 1434 248 118 23 chr4 107167195 107167637 -48462483 - RMER5 LTR ERV1 -2 532 49 3 1402 252 322 170 16 chr4 107168113 107168419 -48461701 + L2 LINE L2 2043 2395 -1024 3 1402 901 186 345 21 chr4 107168860 107169141 -48460979 - ORR1D1 LTR MaLR -2 372 1 3 1402 402 313 0 72 chr4 107169507 107169645 -48460475 + MIRm SINE MIR 27 154 -122 3 1402 334 324 76 6 chr4 107172140 107172311 -48457809 - MIR SINE MIR -10 252 70 3 1402 274 325 88 38 chr4 107172387 107172547 -48457573 + MIRm SINE MIR 1 168 -108 3 1402 232 233 0 0 chr4 107175697 107175740 -48454380 + MIR SINE MIR 82 124 -84 3 1402 191 350 55 31 chr4 107175994 107176121 -48453999 - MIR SINE MIR -28 234 105 3 1402 184 209 23 23 chr4 107176158 107176202 -48453918 - MIR SINE MIR -83 125 82 3 1402 297 264 132 0 chr4 107177112 107177203 -48452917 + L2a LINE L2 3324 3426 0 3 1402 182 171 0 24 chr4 107177746 107177788 -48452332 + G-rich Low_complexity Low_complexity 1 41 0 3 1402 4486 8 2 12 chr4 107179075 107179573 -48450547 - MT2_Mm LTR ERVL 0 493 1 3 1402 305 0 0 0 chr4 107179573 107179611 -48450509 - MERVL-int LTR ERVL 0 5485 5448 3 1402 399 167 46 35 chr4 107179611 107179698 -48450422 - ORR1A3-int LTR MaLR -1323 640 553 3 1402 46211 14 6 0 chr4 107179698 107185024 -48445096 - MERVL-int LTR ERVL -125 5360 1 3 1402 4486 8 2 12 chr4 107185024 107185522 -48444598 - MT2_Mm LTR ERVL 0 493 1 3 1402 1000 188 113 15 chr4 107186604 107186799 -48443321 - B3 SINE B2 0 216 3 3 1402 428 195 26 0 chr4 107187446 107187523 -48442597 - 5S rRNA rRNA -31 90 12 3 1402 294 256 164 23 chr4 107188596 107188724 -48441396 + MIRb SINE MIR 41 186 -82 3 1402 190 341 122 0 chr4 107189066 107189189 -48440931 - L2a LINE L2 -19 3407 3270 3 1402 232 91 0 43 chr4 107189352 107189398 -48440722 + (CCCCCT)n Simple_repeat Simple_repeat 2 45 0 3 1402 281 374 17 9 chr4 107189411 107189527 -48440593 + L2a LINE L2 3283 3399 -27 3 1402 454 271 85 8 chr4 107189610 107189740 -48440380 + B1F1 SINE Alu 2 141 -8 3 1402 21 36 0 0 chr4 107190332 107190360 -48439760 + AT_rich Low_complexity Low_complexity 1 28 0 3 1402 1348 65 43 11 chr4 107190369 107190557 -48439563 + B2_Mm2 SINE B2 2 195 0 3 1402 471 87 0 0 chr4 107190860 107190929 -48439191 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1402 219 103 0 0 chr4 107193428 107193467 -48436653 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1402 213 326 47 37 chr4 107194366 107194535 -48435585 - L2b LINE L2 -187 3200 3026 3 1402 318 26 0 0 chr4 107195120 107195159 -48434961 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1402 245 353 175 11 chr4 107195181 107195370 -48434750 + MIRb SINE MIR 49 268 0 3 1402 225 326 189 35 chr4 107195459 107195490 -48434630 + ID_B1 SINE B4 53 217 -7 3 1402 329 378 18 9 chr4 107195490 107195602 -48434518 + PB1D7 SINE Alu 1 113 -7 3 1402 207 329 41 0 chr4 107196778 107196851 -48433269 - MIRb SINE MIR -76 192 117 3 1402 746 217 63 74 chr4 107197741 107197930 -48432190 - B3A SINE B2 -11 187 1 3 1402 271 113 38 0 chr4 107198173 107198226 -48431894 + CT-rich Low_complexity Low_complexity 1 55 0 3 1402 24 0 0 0 chr4 107198718 107198742 -48431378 + GC_rich Low_complexity Low_complexity 1 24 0 3 1402 351 299 72 64 chr4 107199302 107199427 -48430693 - ORR1D2 LTR MaLR 0 512 267 3 1402 558 279 111 10 chr4 107199497 107199696 -48430424 + ID_B1 SINE B4 1 219 -5 3 1402 998 119 31 51 chr4 107200118 107200313 -48429807 - B2_Mm2 SINE B2 -3 192 2 3 1402 33537 55 7 4 chr4 107200322 107205548 -48424572 - L1Md_F2 LINE L1 0 6582 1389 3 1402 291 257 33 107 chr4 107205717 107205839 -48424281 - PB1D10 SINE Alu 0 117 5 3 1402 836 196 76 23 chr4 107206108 107206280 -48423840 - B3 SINE B2 -10 206 26 3 1402 255 103 0 0 chr4 107206386 107206425 -48423695 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1402 624 38 0 0 chr4 107206444 107206523 -48423597 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1402 353 311 140 28 chr4 107206525 107206810 -48423310 + L2a LINE L2 2943 3261 -165 3 1402 511 302 31 12 chr4 107206948 107207109 -48423011 + L2a LINE L2 3261 3424 -2 3 1402 226 267 47 88 chr4 107207239 107207387 -48422733 + L1M5 LINE L1 4919 5060 -1086 3 1402 231 325 85 54 chr4 107207441 107207510 -48422610 - YREP_Mm Unknown Unknown -1425 387 315 3 1402 405 280 17 78 chr4 107207510 107207626 -48422494 + PB1D10 SINE Alu 2 110 -7 3 1402 477 122 0 0 chr4 107207627 107207701 -48422419 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 3 1402 544 318 0 15 chr4 107207893 107208091 -48422029 + L1M5 LINE L1 5571 5765 -359 3 1402 626 205 56 24 chr4 107211238 107211363 -48418757 - RSINE1 SINE B4 -31 134 6 3 1402 290 271 59 0 chr4 107212216 107212301 -48417819 - PB1D10 SINE Alu -57 90 1 3 1402 486 274 118 0 chr4 107212301 107212371 -48417749 - B4A SINE B4 -206 86 1 3 1402 240 35 0 0 chr4 107212406 107212435 -48417685 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1402 4629 65 7 0 chr4 107212712 107213331 -48416789 + L1Md_F2 LINE L1 4964 5586 -297 3 1402 7381 68 39 7 chr4 107213331 107214285 -48415835 + L1Md_F2 LINE L1 5587 6570 -12 3 1402 279 114 0 0 chr4 107214291 107214335 -48415785 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 3 1402 629 284 117 26 chr4 107214964 107215153 -48414967 - L1M5 LINE L1 -825 5321 5119 3 1402 180 0 0 0 chr4 107215153 107215173 -48414947 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1402 629 284 117 26 chr4 107215173 107215410 -48414710 - L1M5 LINE L1 -1028 5118 4856 3 1402 660 270 46 46 chr4 107215422 107215616 -48414504 + B4A SINE B4 2 195 -97 4 1402 1061 216 10 0 chr4 107215614 107215808 -48414312 + B3 SINE B2 21 216 0 4 1402 283 338 14 0 chr4 107215843 107215917 -48414203 + B4A SINE B4 217 291 -1 4 1402 747 341 94 35 chr4 107216078 107216293 -48413827 - L1M5 LINE L1 -1361 4785 4563 3 1402 454 231 229 36 chr4 107216293 107216459 -48413661 - B3A SINE B2 0 198 1 4 175 747 341 94 35 chr4 107216459 107217241 -48412879 - L1M5 LINE L1 -1584 4562 3729 3 1403 192 200 0 0 chr4 107217258 107217303 -48412817 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 4 1403 319 350 49 102 chr4 107217538 107217764 -48412356 - MLT1C LTR MaLR -1 466 253 4 1403 682 253 7 0 chr4 107217833 107217983 -48412137 + B3A SINE B2 2 152 -46 4 1403 249 33 0 0 chr4 107217995 107218025 -48412095 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1403 627 48 0 0 chr4 107218875 107218958 -48411162 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1403 204 200 0 35 chr4 107220827 107220884 -48409236 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 4 1403 187 241 67 33 chr4 107222478 107222538 -48407582 + MIRb SINE MIR 40 101 -167 4 1403 824 296 20 12 chr4 107222844 107223090 -48407030 - MER20B DNA MER1_type -346 437 190 4 1403 1516 119 18 0 chr4 107225105 107225323 -48404797 + URR1A DNA MER1_type 5 226 0 4 1403 349 284 156 75 chr4 107225617 107225975 -48404145 + L2a LINE L2 3031 3417 -9 4 1403 22 0 0 0 chr4 107226037 107226059 -48404061 + AT_rich Low_complexity Low_complexity 1 22 0 4 1403 365 326 81 7 chr4 107226746 107226882 -48403238 - RSINE1 SINE B4 -3 162 17 4 1403 890 85 8 0 chr4 107226882 107227011 -48403109 + (TTCTC)n Simple_repeat Simple_repeat 4 133 0 4 1403 1196 28 0 41 chr4 107227013 107227160 -48402960 - B1_Mus2 SINE Alu -6 141 1 4 1403 397 294 15 17 chr4 107227217 107227366 -48402754 + L1M5 LINE L1 5532 5683 -2199 4 1403 368 267 58 44 chr4 107228230 107228367 -48401753 + L1MEg LINE L1 226 364 -5720 4 1403 397 264 171 30 chr4 107228555 107228883 -48401237 + L1MEg LINE L1 1677 2050 -4034 4 1403 374 353 34 23 chr4 107229717 107229894 -48400226 + MLT1A LTR MaLR 190 368 -6 4 1403 382 300 21 9 chr4 107231060 107231228 -48398892 - MIRb SINE MIR -38 230 61 4 1403 478 250 94 50 chr4 107232074 107232343 -48397777 - ORR1E LTR MaLR -18 361 1 4 1403 235 202 152 0 chr4 107232505 107232584 -48397536 + MIR SINE MIR 31 121 -87 4 1403 307 187 107 0 chr4 107233165 107233240 -48396880 - MIRb SINE MIR -67 201 119 4 1403 850 227 205 30 chr4 107237247 107237579 -48392541 - MLT1B LTR MaLR 0 390 1 4 1403 196 273 106 64 chr4 107239491 107239585 -48390535 - MIR SINE MIR -89 119 22 4 1403 502 250 8 8 chr4 107242755 107242872 -48387248 - MIRb SINE MIR -72 196 80 4 1403 466 307 14 17 chr4 107244019 107244188 -48385932 + MIRb SINE MIR 22 185 -83 4 1403 540 0 0 0 chr4 107244540 107244600 -48385520 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1403 1039 167 132 34 chr4 107245244 107245449 -48384671 - URR1B DNA MER1_type 0 225 1 4 1403 549 289 145 40 chr4 107245515 107245764 -48384356 + B4A SINE B4 4 278 -14 4 1403 464 100 12 0 chr4 107245766 107245846 -48384274 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1403 217 207 99 43 chr4 107245931 107246034 -48384086 - MIRb SINE MIR -115 147 32 4 1403 773 241 149 146 chr4 107246864 107247233 -48382887 - MTEb LTR MaLR -7 372 3 4 1403 208 217 0 0 chr4 107247545 107247591 -48382529 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1403 726 260 57 5 chr4 107248020 107248229 -48381891 + B4A SINE B4 70 289 -3 4 1403 464 0 18 0 chr4 107248244 107248300 -48381820 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1403 258 250 27 27 chr4 107248375 107248449 -48381671 + MIRb SINE MIR 54 127 -141 4 1403 224 312 13 13 chr4 107249343 107249421 -48380699 - L2 LINE L2 -526 2893 2816 4 1403 186 263 70 0 chr4 107250677 107250734 -48379386 - MIRb SINE MIR -24 244 184 4 1403 263 335 58 26 chr4 107251216 107251372 -48378748 + MIR3 SINE MIR 25 185 -23 4 1403 487 286 95 6 chr4 107251458 107251652 -48378468 + L2b LINE L2 2948 3161 -226 4 1403 1051 136 52 74 chr4 107252931 107253162 -48376958 + URR1A DNA MER1_type 1 226 0 4 1403 206 316 0 38 chr4 107254245 107254324 -48375796 - L4 LINE RTE -204 1825 1750 4 1403 259 253 125 11 chr4 107255525 107255613 -48374507 - MIR SINE MIR -90 172 75 4 1403 1348 236 120 66 chr4 107256516 107257073 -48373047 - L1MC LINE L1 -945 5201 4615 4 1403 246 192 0 0 chr4 107257103 107257155 -48372965 + (CGTG)n Simple_repeat Simple_repeat 4 55 0 4 1403 370 224 74 136 chr4 107257195 107257269 -48372851 - L1MC LINE L1 -1538 4608 4549 4 1403 1235 48 7 0 chr4 107257269 107257415 -48372705 - B1_Mus2 SINE Alu 0 147 1 4 1403 370 224 74 136 chr4 107257415 107257516 -48372604 - L1MC LINE L1 -1598 4548 4444 4 1403 280 333 0 0 chr4 107257528 107257621 -48372499 - MER47C DNA MER2_type -3 94 2 4 1403 632 254 107 34 chr4 107257649 107257947 -48372173 - L1MC LINE L1 -1759 4387 4068 4 1403 535 345 72 5 chr4 107258138 107258481 -48371639 - L1MC LINE L1 -2429 3717 3352 4 1403 233 234 83 61 chr4 107258481 107258503 -48371617 - B1_Mus2 SINE Alu 0 147 125 4 1403 427 256 0 0 chr4 107258503 107258585 -48371535 - ID4_ SINE ID 0 83 2 4 1403 391 215 38 17 chr4 107258585 107258694 -48371426 - PB1D10 SINE Alu -23 124 13 4 1403 226 281 113 10 chr4 107258613 107258710 -48371410 - ID_B1 SINE B4 -48 176 70 4 1403 498 17 0 0 chr4 107258710 107258769 -48371351 + (TCC)n Simple_repeat Simple_repeat 3 61 0 4 1403 396 0 0 0 chr4 107258771 107258815 -48371305 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1403 401 136 0 0 chr4 107258837 107258896 -48371224 - B3A SINE B2 -58 140 82 4 1403 309 300 65 18 chr4 107258925 107259142 -48370978 - L1MD LINE L1 -2820 3326 3100 4 1403 270 289 227 7 chr4 107259327 107259477 -48370643 - L1MC LINE L1 -3284 2862 2680 4 1403 330 361 103 30 chr4 107259663 107259934 -48370186 - L1MC LINE L1 -3732 2414 2124 4 1403 343 237 58 11 chr4 107259935 107260048 -48370072 - PB1D10 SINE Alu -28 121 3 4 1403 287 219 16 0 chr4 107259991 107260055 -48370065 - ID_B1 SINE B4 -83 141 77 4 1403 1505 75 5 0 chr4 107260062 107260249 -48369871 - B2_Mm1t SINE B2 -5 188 1 4 1403 838 144 50 19 chr4 107260259 107260431 -48369689 - B2_Mm2 SINE B2 -1 194 19 4 1403 27 0 0 0 chr4 107261231 107261258 -48368862 + AT_rich Low_complexity Low_complexity 1 27 0 4 1403 853 263 34 21 chr4 107261385 107261622 -48368498 - B4A SINE B4 -52 240 1 4 1403 975 258 19 35 chr4 107261796 107262057 -48368063 - MER2 DNA MER2_type 0 345 89 4 1403 296 204 35 71 chr4 107264174 107264238 -48365882 + MIRc SINE MIR 61 127 -149 4 1403 775 46 0 18 chr4 107264238 107264348 -48365772 + (TTTTC)n Simple_repeat Simple_repeat 3 110 0 4 1403 1235 48 0 0 chr4 107264349 107264495 -48365625 - B1_Mus1 SINE Alu -1 147 2 4 1403 296 282 30 81 chr4 107264495 107264569 -48365551 + MIRc SINE MIR 125 195 -81 4 1403 291 359 52 7 chr4 107265446 107265600 -48364520 - L2b LINE L2 -178 3197 3037 4 1403 258 105 0 0 chr4 107266858 107266896 -48363224 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 4 1403 222 200 0 0 chr4 107268052 107268092 -48362028 + MIR SINE MIR 113 152 -110 4 1403 699 99 0 0 chr4 107268706 107268807 -48361313 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1403 1047 101 0 7 chr4 107268898 107269038 -48361082 + B1_Mus2 SINE Alu 1 139 -8 4 1403 192 333 32 0 chr4 107269421 107269514 -48360606 + MIRb SINE MIR 50 145 -123 4 1403 360 0 0 0 chr4 107270235 107270275 -48359845 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1403 203 281 135 0 chr4 107273654 107273743 -48356377 + MIR SINE MIR 64 164 -98 4 1403 513 0 0 68 chr4 107273915 107273988 -48356132 + L1_Mus2 LINE L1 6499 6566 0 4 1403 841 321 83 78 chr4 107274079 107274472 -48355648 + L1MB8 LINE L1 5386 5793 -385 4 1403 518 261 18 42 chr4 107274472 107274640 -48355480 - RSINE1 SINE B4 0 165 2 4 1403 841 321 83 78 chr4 107274640 107275033 -48355087 + L1MB8 LINE L1 5794 6176 -2 4 1403 202 302 32 0 chr4 107276371 107276434 -48353686 - MIR SINE MIR -95 113 49 4 1403 187 266 24 48 chr4 107279939 107280022 -48350098 - MIR3 SINE MIR -38 170 90 4 1403 214 300 17 0 chr4 107282006 107282066 -48348054 - MIR SINE MIR -11 251 191 4 1403 233 318 126 57 chr4 107284530 107284693 -48345427 - MIR SINE MIR -77 191 5 4 1403 190 350 100 0 chr4 107284896 107285036 -48345084 - L2b LINE L2 -215 3160 3007 4 1403 244 325 38 45 chr4 107287848 107287980 -48342140 - MER20 DNA MER1_type -53 166 36 4 1403 180 347 13 39 chr4 107288641 107288719 -48341401 - MIRb SINE MIR -93 175 100 4 1403 194 346 38 9 chr4 107289669 107289774 -48340346 + MIRb SINE MIR 40 147 -121 4 1403 270 0 0 0 chr4 107290509 107290539 -48339581 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1403 387 0 0 0 chr4 107290541 107290584 -48339536 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1403 186 43 0 0 chr4 107293179 107293202 -48336918 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1403 233 288 43 25 chr4 107293869 107293978 -48336142 - MIRb SINE MIR -92 176 69 4 1403 556 67 0 0 chr4 107295270 107295345 -48334775 + BC1_Mm scRNA scRNA 1 75 -77 4 1403 368 20 20 0 chr4 107295346 107295395 -48334725 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1403 238 301 14 0 chr4 107295477 107295550 -48334570 + LTR16B LTR ERVL 378 451 -12 4 1403 274 257 108 0 chr4 107299293 107299367 -48330753 + ID4 SINE ID 2 83 0 4 1403 436 194 27 18 chr4 107302420 107302530 -48327590 + PB1D10 SINE Alu 2 112 -5 4 1403 994 125 217 26 chr4 107303128 107303317 -48326803 - URR1A DNA MER1_type 0 226 2 4 1403 335 321 93 3 chr4 107306593 107306766 -48323354 + MIRb SINE MIR 5 191 -77 4 1403 212 122 0 24 chr4 107307892 107307934 -48322186 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 1403 284 143 0 18 chr4 107310546 107310603 -48319517 + GA-rich Low_complexity Low_complexity 3 58 0 4 1403 374 270 0 102 chr4 107310639 107310767 -48319353 + MT2B LTR ERVL 142 256 -345 4 1403 629 162 2 8 chr4 107310668 107310791 -48319329 + B1_Mur3 SINE Alu 5 123 -24 4 1403 184 295 0 16 chr4 107312734 107312796 -48317324 - MIRb SINE MIR -174 94 34 5 1403 1121 135 0 21 chr4 107313363 107313552 -48316568 - B2_Mm2 SINE B2 -9 186 2 5 1403 479 271 94 107 chr4 107314781 107314936 -48315184 + L1MB7 LINE L1 4024 4195 -1951 5 1403 222 37 0 0 chr4 107314936 107314963 -48315157 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1403 479 271 94 107 chr4 107314963 107314974 -48315146 + L1MB7 LINE L1 4196 4206 -1940 5 1403 1468 79 16 5 chr4 107314974 107315164 -48314956 + B2_Mm2 SINE B2 1 192 -3 5 1403 479 271 94 107 chr4 107315164 107315389 -48314731 + L1MB7 LINE L1 4207 4410 -1736 5 1403 392 306 9 0 chr4 107315394 107315505 -48314615 + B1_Mur2 SINE Alu 6 117 -32 5 1403 1402 312 84 19 chr4 107315573 107316302 -48313818 + L1MB7 LINE L1 4495 5270 -876 5 1403 1126 320 117 32 chr4 107316356 107317049 -48313071 + L1MB7 LINE L1 5380 6131 -47 5 1403 220 254 0 17 chr4 107317502 107317562 -48312558 - ID4 SINE ID -24 59 1 5 1403 366 301 18 9 chr4 107317567 107317681 -48312439 - PB1D10 SINE Alu 0 117 3 5 1403 4456 20 2 0 chr4 107317738 107318230 -48311890 - MT2_Mm LTR ERVL 0 493 1 5 1403 297 0 0 0 chr4 107318230 107318268 -48311852 - MERVL-int LTR ERVL 0 5485 5448 5 1403 374 167 46 35 chr4 107318268 107318355 -48311765 - ORR1A3-int LTR MaLR -1323 640 553 5 1403 23555 19 0 0 chr4 107318355 107321084 -48309036 - MERVL-int LTR ERVL -125 5360 2631 5 1403 380 40 0 0 chr4 107321073 107321123 -48308997 - MERVL-int LTR ERVL -5435 50 1 5 1403 4456 20 2 0 chr4 107321123 107321615 -48308505 - MT2_Mm LTR ERVL 0 493 1 5 1403 359 325 67 76 chr4 107322697 107323173 -48306947 + HAL1 LINE L1 1232 1703 -804 5 1403 360 0 0 0 chr4 107323562 107323602 -48306518 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1403 1590 129 73 108 chr4 107324608 107325033 -48305087 - RMER17C LTR ERVK 0 410 1 5 1403 419 221 12 35 chr4 107326483 107326652 -48303468 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 5 1403 751 219 29 0 chr4 107326707 107326844 -48303276 - B1_Mur2 SINE Alu -7 142 2 5 1403 423 0 0 0 chr4 107327551 107327598 -48302522 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1403 476 310 92 48 chr4 107327610 107327881 -48302239 - B4A SINE B4 -9 283 1 5 1403 198 279 89 0 chr4 107328968 107329047 -48301073 + MIR3 SINE MIR 90 175 -33 5 1403 186 191 0 0 chr4 107329651 107329693 -48300427 + GA-rich Low_complexity Low_complexity 4 45 0 5 1403 990 125 6 11 chr4 107329693 107329871 -48300249 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 5 1403 629 58 12 0 chr4 107330803 107330889 -48299231 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 5 1403 248 338 158 6 chr4 107331210 107331368 -48298752 + LTR33 LTR ERVL 41 222 -293 5 1403 768 282 156 17 chr4 107331680 107332027 -48298093 + MLT1E1A LTR MaLR 285 679 -1 5 1403 262 274 159 16 chr4 107332382 107332508 -48297612 + MERVL_2A-int LTR ERVL 3940 4083 -1678 5 1403 720 142 0 102 chr4 107332757 107332914 -48297206 - B1_Mur4 SINE Alu 0 150 10 5 1403 260 242 196 37 chr4 107333187 107333350 -48296770 + MERVL_2A-int LTR ERVL 4087 4275 -1392 5 1403 2130 114 12 12 chr4 107333833 107334170 -48295950 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1403 48179 19 1 1 chr4 107334172 107339757 -48290363 - IAPEz-int LTR ERVK -2 6479 898 5 1403 299 60 368 15 chr4 107339749 107339817 -48290303 - IAPEz-int LTR ERVK -6382 99 8 5 1403 2130 114 12 12 chr4 107339817 107340154 -48289966 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1403 1499 211 132 14 chr4 107341211 107341567 -48288553 - MTD LTR MaLR -14 405 8 5 1403 2416 151 39 15 chr4 107341567 107341978 -48288142 - MTC LTR MaLR 0 421 1 5 1403 1014 205 10 15 chr4 107342127 107342325 -48287795 - URR1B DNA MER1_type -28 197 1 5 1403 244 264 0 0 chr4 107342717 107342770 -48287350 + L2b LINE L2 3306 3358 -17 5 1403 408 194 43 0 chr4 107343224 107343363 -48286757 + GA-rich Low_complexity Low_complexity 1 145 0 5 1403 440 322 144 27 chr4 107343982 107344359 -48285761 + Charlie4a DNA MER1_type 71 491 -17 5 1403 577 208 66 51 chr4 107344417 107344554 -48285566 + ID_B1 SINE B4 86 224 0 5 1403 285 224 59 0 chr4 107344586 107344671 -48285449 + L1MD LINE L1 4804 4893 -1253 5 1403 323 290 100 14 chr4 107345066 107345206 -48284914 + RSINE1 SINE B4 3 154 -11 5 1403 1237 57 109 0 chr4 107345441 107345616 -48284504 + B2_Mm2 SINE B2 1 194 -1 5 1403 1373 52 35 0 chr4 107347435 107347607 -48282513 + B2_Mm1t SINE B2 1 178 -15 5 1403 180 0 0 0 chr4 107347609 107347629 -48282491 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1404 277 243 42 14 chr4 107348617 107348688 -48281432 + PB1D7 SINE Alu 40 112 -8 5 1404 195 306 59 30 chr4 107349971 107350072 -48280048 - MIR SINE MIR -75 187 84 5 1404 187 135 26 51 chr4 107350153 107350192 -48279928 + MIRm SINE MIR 124 161 -115 5 1404 696 259 0 52 chr4 107350504 107350659 -48279461 + B3A SINE B2 8 154 -44 5 1404 441 0 0 0 chr4 107350659 107350708 -48279412 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1404 323 288 35 106 chr4 107350708 107350740 -48279380 + B2_Mm2 SINE B2 155 182 -13 5 1404 1017 23 8 0 chr4 107350740 107350871 -48279249 + L1Md_T LINE L1 6451 6582 0 5 1404 680 284 70 84 chr4 107351042 107351315 -48278805 + B4 SINE B4 2 270 -22 5 1404 249 182 0 0 chr4 107351985 107352040 -48278080 + (TGG)n Simple_repeat Simple_repeat 2 56 0 5 1404 478 274 131 9 chr4 107353834 107354055 -48276065 - Lx8 LINE L1 -364 7109 6862 5 1404 274 282 52 94 chr4 107354323 107354515 -48275605 - MTEa LTR MaLR -193 186 3 5 1404 529 230 61 38 chr4 107354513 107354644 -48275476 + RSINE1 SINE B4 1 134 -31 5 1404 1124 63 28 0 chr4 107354844 107354987 -48275133 + B1_Mm SINE Alu 1 147 0 5 1404 381 187 0 0 chr4 107354987 107355062 -48275058 + A-rich Low_complexity Low_complexity 1 75 0 5 1404 826 163 204 43 chr4 107355265 107355451 -48274669 + B3 SINE B2 1 216 0 5 1404 23 0 0 0 chr4 107355458 107355481 -48274639 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 207 0 0 0 chr4 107357130 107357153 -48272967 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1404 1253 27 7 0 chr4 107357454 107357600 -48272520 + B1_Mus1 SINE Alu 2 148 0 5 1404 267 54 0 0 chr4 107357681 107357718 -48272402 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1404 207 100 0 0 chr4 107358093 107358123 -48271997 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1404 378 107 0 0 chr4 107358205 107358261 -48271859 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1404 319 104 21 0 chr4 107358265 107358313 -48271807 - PB1D9 SINE Alu -71 49 1 5 1404 238 125 83 0 chr4 107359210 107359258 -48270862 - ID4 SINE ID 0 83 32 5 1404 246 152 133 17 chr4 107359217 107359277 -48270843 - ID SINE ID -150 74 8 5 1404 192 97 0 0 chr4 107359297 107359328 -48270792 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 5 1404 214 291 60 45 chr4 107359328 107359461 -48270659 - B1F SINE Alu -2 147 13 5 1404 470 181 31 101 chr4 107359607 107359736 -48270384 - PB1D9 SINE Alu 0 120 1 5 1404 233 75 0 24 chr4 107360006 107360047 -48270073 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 5 1404 241 241 146 37 chr4 107360176 107360258 -48269862 + MT2B LTR ERVL 174 264 -337 5 1404 527 109 228 0 chr4 107360189 107360281 -48269839 + B1_Mus2 SINE Alu 23 135 -12 5 1404 191 0 0 94 chr4 107360282 107360314 -48269806 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1404 186 312 0 40 chr4 107360781 107360831 -48269289 - L2b LINE L2 -202 3173 3126 5 1404 486 114 0 0 chr4 107361329 107361408 -48268712 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1404 886 270 29 88 chr4 107361417 107361535 -48268585 - B4A SINE B4 -35 257 145 5 1404 585 42 0 0 chr4 107361535 107361607 -48268513 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1404 4278 132 28 26 chr4 107361610 107362365 -48267755 + RMER6A LTR ERVK 1 756 0 5 1404 886 270 29 88 chr4 107362365 107362514 -48267606 - B4A SINE B4 -148 144 5 5 1404 23 33 0 0 chr4 107362830 107362860 -48267260 + AT_rich Low_complexity Low_complexity 1 30 0 5 1404 316 184 98 147 chr4 107363196 107363298 -48266822 + B1F SINE Alu 44 140 -9 5 1404 231 36 0 0 chr4 107363305 107363333 -48266787 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1404 393 243 25 62 chr4 107364202 107364364 -48265756 - Lx9 LINE L1 -2 7642 7487 5 1404 279 154 0 0 chr4 107364372 107364437 -48265683 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1404 751 226 39 11 chr4 107364438 107364617 -48265503 - Lx9 LINE L1 -146 7498 7315 5 1404 22 35 0 0 chr4 107364640 107364669 -48265451 + AT_rich Low_complexity Low_complexity 1 29 0 5 1404 1831 174 112 43 chr4 107364774 107365165 -48264955 + MTD LTR MaLR 1 418 -1 5 1404 255 264 0 0 chr4 107365444 107365535 -48264585 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 1404 442 344 11 0 chr4 107365535 107365724 -48264396 - L1M2 LINE L1 -503 5788 5598 5 1404 344 207 158 0 chr4 107365779 107365861 -48264259 - HAL1-3A_ME LINE L1 -788 2070 1976 5 1404 441 223 197 8 chr4 107365938 107366060 -48264060 - RSINE1 SINE B4 -17 148 4 5 1404 487 253 91 0 chr4 107366077 107366231 -48263889 - L1M2 LINE L1 -827 5470 5303 5 1404 218 291 139 43 chr4 107367012 107367127 -48262993 - L4 LINE RTE -618 1411 1286 5 1404 335 305 150 45 chr4 107367141 107367362 -48262758 - MIRb SINE MIR 0 262 20 5 1404 284 200 17 0 chr4 107367370 107367430 -48262690 - B3 SINE B2 -1 215 155 5 1404 324 187 128 47 chr4 107367497 107367622 -48262498 + B4A SINE B4 184 291 -1 5 1404 264 132 47 24 chr4 107367622 107367707 -48262413 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1404 514 98 37 75 chr4 107367741 107367928 -48262192 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1404 239 340 160 34 chr4 107368017 107368285 -48261835 - L2c LINE L2 -7 3380 3079 5 1404 848 147 0 7 chr4 107368989 107369140 -48260980 + CT-rich Low_complexity Low_complexity 3 152 0 5 1404 588 307 55 70 chr4 107369140 107369180 -48260940 - B4A SINE B4 -39 253 215 5 1404 721 155 40 53 chr4 107369180 107369330 -48260790 - B1_Mur3 SINE Alu 0 149 2 5 1404 338 61 0 20 chr4 107369330 107369380 -48260740 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 1404 588 307 55 70 chr4 107369380 107369594 -48260526 - B4A SINE B4 -78 214 3 5 1404 1358 80 11 0 chr4 107369618 107369794 -48260326 + B2_Mm1t SINE B2 2 179 -14 5 1404 398 110 52 3 chr4 107369860 107369966 -48260154 + B2_Mm2 SINE B2 47 195 0 5 1404 324 275 120 11 chr4 107369964 107370056 -48260064 - PB1D10 SINE Alu -13 104 3 5 1404 882 280 42 39 chr4 107370252 107370325 -48259795 + B4A SINE B4 6 80 -212 5 1404 4226 33 12 0 chr4 107370325 107370812 -48259308 - MT2_Mm LTR ERVL 0 493 1 5 1404 882 280 42 39 chr4 107370812 107371024 -48259096 + B4A SINE B4 81 292 0 5 1404 475 246 157 6 chr4 107371210 107371382 -48258738 + B3A SINE B2 1 198 0 6 1404 406 233 21 43 chr4 107371415 107371509 -48258611 + RSINE1 SINE B4 50 141 -24 6 1404 283 182 273 0 chr4 107371729 107371795 -48258325 + MIRc SINE MIR 80 163 -105 6 1404 504 208 106 80 chr4 107372188 107372410 -48257710 + MER33 DNA MER1_type 35 290 -34 6 1404 680 216 266 42 chr4 107372617 107372854 -48257266 - B4A SINE B4 -2 290 1 6 1404 417 323 40 104 chr4 107374528 107374777 -48255343 - MIRb SINE MIR -22 246 14 6 1404 265 266 15 45 chr4 107374788 107374855 -48255265 + MER21B LTR ERV1 1 65 -798 6 1404 540 256 134 6 chr4 107374872 107375029 -48255091 - B3A SINE B2 0 198 22 6 1404 358 306 136 12 chr4 107375101 107375263 -48254857 + MER21B LTR ERV1 535 716 -147 6 1404 336 153 118 53 chr4 107375279 107375355 -48254765 + B3 SINE B2 2 82 -134 6 1404 21 36 0 0 chr4 107375393 107375421 -48254699 + AT_rich Low_complexity Low_complexity 1 28 0 6 1404 570 179 191 14 chr4 107375463 107375610 -48254510 + MTEa LTR MaLR 11 183 -196 6 1404 442 250 118 0 chr4 107375953 107375972 -48254148 + B4 SINE B4 70 220 -71 6 1404 661 121 164 0 chr4 107375972 107376088 -48254032 + B1_Mus1 SINE Alu 8 142 -6 6 1404 540 56 0 0 chr4 107376118 107376190 -48253930 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1404 487 161 129 198 chr4 107376251 107376332 -48253788 - MTE2a LTR MaLR -191 188 91 6 1404 2763 144 58 19 chr4 107376332 107376812 -48253308 + RLTR19 LTR ERVK 1 499 0 6 1404 487 161 129 198 chr4 107376812 107376932 -48253188 - MTE2a LTR MaLR -289 90 1 6 1404 449 211 42 50 chr4 107376961 107377081 -48253039 + B3 SINE B2 97 215 -1 6 1404 761 233 20 60 chr4 107377078 107377279 -48252841 + MTEb LTR MaLR 185 377 -2 6 1404 371 309 58 32 chr4 107377327 107377455 -48252665 + RSINE1 SINE B4 6 137 -28 6 1404 203 32 65 0 chr4 107377455 107377486 -48252634 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 6 1404 371 309 58 32 chr4 107377486 107377511 -48252609 + RSINE1 SINE B4 138 163 -2 6 1404 908 152 8 0 chr4 107377789 107377921 -48252199 + B1_Mus2 SINE Alu 2 134 -13 6 1404 252 281 0 45 chr4 107378176 107378243 -48251877 + MLT1A1 LTR MaLR 311 374 -34 6 1404 901 121 61 0 chr4 107378693 107378825 -48251295 - B1_Mur1 SINE Alu -8 141 2 6 1404 25 0 0 0 chr4 107378892 107378917 -48251203 + AT_rich Low_complexity Low_complexity 1 25 0 6 1404 265 170 19 19 chr4 107379187 107379241 -48250879 + ID4_ SINE ID 2 55 -28 6 1404 193 313 44 15 chr4 107381726 107381794 -48248326 - L4 LINE RTE -492 1537 1468 6 1404 315 0 0 0 chr4 107381992 107382027 -48248093 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1404 875 139 36 14 chr4 107382045 107382184 -48247936 - B1_Mus1 SINE Alu -5 143 2 6 1404 1184 74 0 0 chr4 107382478 107382626 -48247494 - B1_Mus1 SINE Alu 0 148 1 6 1404 344 120 0 0 chr4 107383016 107383066 -48247054 - B1_Mus1 SINE Alu -98 50 1 6 1404 329 170 0 0 chr4 107383065 107383118 -48247002 + MTE2a LTR MaLR 1 53 -326 6 1404 274 141 156 0 chr4 107383237 107383301 -48246819 + MTE2a LTR MaLR 306 379 0 6 1404 305 262 79 32 chr4 107383408 107383534 -48246586 + B1F SINE Alu 9 140 -9 6 1404 287 259 0 0 chr4 107383614 107383668 -48246452 + ID4_ SINE ID 20 73 -10 6 1404 285 232 0 51 chr4 107383618 107383677 -48246443 + ID SINE ID 25 80 -144 6 1404 330 339 0 0 chr4 107383785 107383858 -48246262 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1404 246 128 0 0 chr4 107383858 107383897 -48246223 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1404 330 339 0 0 chr4 107383897 107383935 -48246185 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1404 1325 68 0 6 chr4 107384749 107384926 -48245194 + B2_Mm2 SINE B2 14 189 -6 6 1404 427 232 48 27 chr4 107385251 107385397 -48244723 + B1F SINE Alu 1 149 0 6 1404 347 268 159 0 chr4 107385860 107385998 -48244122 + L1MB5 LINE L1 5746 5905 -269 6 1404 394 315 9 9 chr4 107386078 107386187 -48243933 - PB1D10 SINE Alu -8 109 1 6 1404 1967 118 13 7 chr4 107386215 107386514 -48243606 + ORR1C1 LTR MaLR 78 378 0 6 1404 226 225 0 237 chr4 107386614 107386643 -48243477 + RSINE1 SINE B4 15 42 -123 6 1404 1254 41 0 7 chr4 107386643 107386790 -48243330 + B1_Mm SINE Alu 1 146 -1 6 1404 226 225 0 237 chr4 107386790 107386853 -48243267 + RSINE1 SINE B4 43 85 -80 6 1404 1110 75 48 0 chr4 107386795 107386942 -48243178 + B2_Mm2 SINE B2 27 180 -15 6 1404 336 48 0 0 chr4 107386942 107386984 -48243136 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 6 1404 320 254 155 44 chr4 107387179 107387267 -48242853 + L1MB5 LINE L1 5903 6005 -173 6 1404 216 0 0 0 chr4 107387267 107387291 -48242829 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 6 1404 320 254 155 44 chr4 107387291 107387383 -48242737 + L1MB5 LINE L1 6006 6103 -75 6 1404 245 241 89 16 chr4 107389022 107389149 -48240971 - MIRb SINE MIR -95 173 34 6 1404 288 0 0 0 chr4 107389898 107389930 -48240190 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1404 249 312 0 0 chr4 107391497 107391577 -48238543 + (TTCA)n Simple_repeat Simple_repeat 3 82 0 6 1404 695 112 227 12 chr4 107392188 107392351 -48237769 + URR1A DNA MER1_type 1 198 -28 6 1404 246 62 0 0 chr4 107393100 107393132 -48236988 + (CCCCCG)n Simple_repeat Simple_repeat 3 34 0 6 1404 215 283 17 102 chr4 107393970 107394088 -48236032 - MIR SINE MIR -125 137 30 6 1404 4340 101 95 13 chr4 107394099 107394780 -48235340 - RMER19A LTR ERVK 0 737 1 6 1404 1141 206 119 10 chr4 107395011 107395361 -48234759 - MTD LTR MaLR -14 365 1 6 1404 723 234 36 6 chr4 107395437 107395605 -48234515 + B3 SINE B2 14 186 -30 6 1404 4848 107 146 5 chr4 107395894 107396731 -48233389 - RMER17B LTR ERVK -3 955 1 6 1404 2496 71 0 0 chr4 107396844 107397169 -48232951 + ORR1A3 LTR MaLR 2 326 0 6 1404 267 31 0 0 chr4 107397576 107397608 -48232512 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1404 627 147 267 12 chr4 107398657 107398829 -48231291 + B3 SINE B2 1 216 0 6 1404 1169 48 0 0 chr4 107398869 107399015 -48231105 + B1_Mus2 SINE Alu 2 147 0 6 1404 23 0 0 0 chr4 107399015 107399038 -48231082 + AT_rich Low_complexity Low_complexity 1 23 0 6 1404 572 262 80 45 chr4 107399039 107399077 -48231043 - B3A SINE B2 -16 182 152 6 1404 2012 179 148 4 chr4 107399077 107399536 -48230584 - RLTR24 LTR ERV1 -4 525 1 6 1404 572 262 80 45 chr4 107399536 107399673 -48230447 - B3A SINE B2 -47 151 1 6 1404 293 250 0 0 chr4 107399711 107399775 -48230345 - RSINE1 SINE B4 -8 157 94 6 1404 818 231 5 27 chr4 107399960 107400147 -48229973 - BGLII_B LTR ERVK -8 433 251 6 1404 1605 167 40 4 chr4 107400216 107400531 -48229589 - ORR1B2 LTR MaLR -13 361 50 6 1404 296 350 0 0 chr4 107400534 107400634 -48229486 - MIRb SINE MIR -146 122 23 6 1404 322 119 67 107 chr4 107400693 107400768 -48229352 + ORR1B2 LTR MaLR 5 76 -291 6 1404 2571 118 55 8 chr4 107401014 107401416 -48228704 - MTC LTR MaLR 0 421 1 6 1404 282 239 142 0 chr4 107402430 107402535 -48227585 + MLT1A LTR MaLR 8 133 -257 6 1404 245 254 100 5 chr4 107402567 107402666 -48227454 + PB1D7 SINE Alu 1 112 -8 6 1404 266 349 38 59 chr4 107402772 107402958 -48227162 + MLT1A LTR MaLR 209 390 0 6 1404 269 324 34 75 chr4 107403522 107403669 -48226451 + MIRm SINE MIR 1 141 -135 6 1404 374 303 152 9 chr4 107404234 107404444 -48225676 - MLT1B LTR MaLR -15 375 136 6 1404 2197 163 46 114 chr4 107404485 107405053 -48225067 + RLTR24 LTR ERV1 1 529 0 6 1404 742 201 99 72 chr4 107405100 107405432 -48224688 - RMER17C LTR ERVK -69 341 1 6 1404 209 200 0 0 chr4 107405531 107405571 -48224549 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1404 357 82 0 0 chr4 107406120 107406169 -48223951 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1404 299 229 57 0 chr4 107406170 107406240 -48223880 + U6 snRNA snRNA 29 102 -5 6 1404 534 276 0 22 chr4 107407162 107407299 -48222821 - ID_B1 SINE B4 -8 216 83 6 1404 574 280 165 26 chr4 107407540 107407734 -48222386 - ID_B1 SINE B4 -2 222 2 6 1404 1576 42 0 0 chr4 107407917 107408108 -48222012 - B2_Mm1t SINE B2 -1 192 2 6 1404 250 310 79 116 chr4 107408699 107408863 -48221257 - Charlie18a DNA MER1_type -65 277 120 6 1404 599 123 0 54 chr4 107408870 107408982 -48221138 + B1_Mur1 SINE Alu 30 135 -14 6 1404 261 0 0 0 chr4 107408982 107409011 -48221109 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 6 1404 543 31 0 0 chr4 107409164 107409229 -48220891 + (GGGA)n Simple_repeat Simple_repeat 3 67 0 6 1404 444 287 53 69 chr4 107409280 107409527 -48220593 + MER33 DNA MER1_type 13 255 -69 6 1404 394 292 2 4 chr4 107409540 107409656 -48220464 + AluG_3 SINE Alu 1 223 -88 6 1404 270 236 0 0 chr4 107410216 107410271 -48219849 - tRNA-Ala-GCY_ tRNA tRNA -20 55 1 6 1404 233 302 117 33 chr4 107411908 107412028 -48218092 + MLT1K LTR MaLR 460 589 -6 6 1404 288 0 0 0 chr4 107412210 107412242 -48217878 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1404 234 105 0 0 chr4 107412686 107412724 -48217396 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1404 392 305 17 0 chr4 107413773 107413891 -48216229 + MLT1A0 LTR MaLR 246 365 0 6 1404 351 257 156 0 chr4 107414199 107414308 -48215812 - L1M5 LINE L1 -721 5458 5333 6 1404 910 113 119 6 chr4 107414309 107414469 -48215651 - B2_Mm2 SINE B2 -1 194 17 6 1404 378 0 0 0 chr4 107414472 107414514 -48215606 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1404 696 148 46 15 chr4 107414514 107414644 -48215476 - B1_Mus1 SINE Alu -14 134 1 6 1404 343 248 88 101 chr4 107414644 107414662 -48215458 - B4 SINE B4 -80 212 67 6 1404 297 202 86 25 chr4 107414738 107414819 -48215301 - L1MB7 LINE L1 -15 6169 6084 6 1404 457 260 74 20 chr4 107414903 107415052 -48215068 - RSINE1 SINE B4 -6 159 3 6 1404 204 40 0 0 chr4 107415332 107415357 -48214763 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1404 256 319 49 34 chr4 107415708 107415819 -48214301 - MIR SINE MIR -77 191 58 7 1404 204 270 54 0 chr4 107416703 107416777 -48213343 - MIR SINE MIR -2 260 183 7 1404 1067 107 78 17 chr4 107416821 107417001 -48213119 + B2_Mm2 SINE B2 2 192 -3 7 1404 797 183 0 7 chr4 107417125 107417268 -48212852 + B1_Mur1 SINE Alu 2 143 -6 7 1404 442 139 23 0 chr4 107417304 107417390 -48212730 + GA-rich Low_complexity Low_complexity 2 89 0 7 1404 246 206 118 0 chr4 107418553 107418621 -48211499 - MIR SINE MIR -141 121 46 7 1404 342 236 86 39 chr4 107418667 107418684 -48211436 + ID_B1 SINE B4 69 154 -70 7 1404 359 211 135 0 chr4 107418684 107418788 -48211332 + B1F SINE Alu 1 118 -31 7 1404 210 71 0 0 chr4 107419204 107419232 -48210888 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1404 261 0 0 0 chr4 107419232 107419260 -48210860 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1404 807 147 0 47 chr4 107419526 107419676 -48210444 - B1_Mur3 SINE Alu -6 143 1 7 1404 190 242 0 139 chr4 107419680 107419752 -48210368 - MIRc SINE MIR -106 162 101 7 1404 206 316 0 0 chr4 107420224 107420281 -48209839 + MIR SINE MIR 92 148 -114 7 1404 1074 199 109 0 chr4 107421246 107421502 -48208618 - MER2 DNA MER2_type -46 299 16 7 1404 305 266 44 109 chr4 107422544 107422845 -48207275 - RMER17C LTR ERVK -42 368 2 7 1404 204 308 30 15 chr4 107423810 107423876 -48206244 - MIR SINE MIR -80 182 116 7 1404 546 200 65 22 chr4 107424855 107424993 -48205127 + B1F2 SINE Alu 5 148 -1 7 1404 180 378 40 0 chr4 107425250 107425324 -48204796 + L2c LINE L2 3310 3386 -1 7 1404 1562 52 0 0 chr4 107425519 107425712 -48204408 - B2_Mm1t SINE B2 0 193 1 7 1404 656 246 84 17 chr4 107425726 107425904 -48204216 - B3A SINE B2 -2 196 7 7 1404 281 330 82 36 chr4 107426000 107426195 -48203925 - L1M5 LINE L1 -289 5835 5632 7 1404 308 259 12 0 chr4 107426239 107426320 -48203800 + ID4_ SINE ID 1 82 -1 7 1404 301 233 99 84 chr4 107426405 107426419 -48203701 + B1F2 SINE Alu 16 144 -1 7 1404 337 319 53 0 chr4 107426419 107426532 -48203588 + ID_B1 SINE B4 102 220 -4 7 1404 233 231 19 133 chr4 107427222 107427235 -48202885 - MIR SINE MIR -60 202 194 7 1404 1234 94 16 16 chr4 107427235 107427429 -48202691 - B2_Mm2 SINE B2 0 195 2 7 1404 242 231 19 133 chr4 107427429 107427520 -48202600 - MIRc SINE MIR -67 201 110 7 1404 1722 165 203 11 chr4 107427689 107428063 -48202057 + RLTR41 LTR ERV1 1 446 0 7 1404 299 331 37 31 chr4 107428418 107428580 -48201540 + RSINE1 SINE B4 3 165 0 7 1404 468 99 0 0 chr4 107428884 107428955 -48201165 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1404 216 200 0 0 chr4 107429399 107429449 -48200671 + GA-rich Low_complexity Low_complexity 4 53 0 7 1404 329 307 137 12 chr4 107431821 107431989 -48198131 + MER2 DNA MER2_type 49 237 -108 7 1404 2134 163 42 2 chr4 107433078 107433478 -48196642 - MTD LTR MaLR -3 416 1 7 1404 191 151 54 54 chr4 107434085 107434141 -48195979 - L3 LINE CR1 -2817 1672 1617 7 1404 194 109 0 42 chr4 107435075 107435123 -48194997 + (TGG)n Simple_repeat Simple_repeat 3 48 0 7 1404 572 365 62 7 chr4 107435189 107435465 -48194655 - MER47A DNA MER2_type -7 359 69 7 1404 486 49 0 0 chr4 107435476 107435537 -48194583 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1404 641 300 112 14 chr4 107435722 107436070 -48194050 - L1MC3 LINE L1 -89 7696 7315 7 1404 589 198 0 9 chr4 107436088 107436195 -48193925 - B1F2 SINE Alu -3 146 41 7 1404 700 167 20 40 chr4 107436245 107436395 -48193725 - B1_Mus2 SINE Alu 0 147 1 7 1404 235 318 102 38 chr4 107436453 107436610 -48193510 - L1MC3 LINE L1 -482 7303 7137 7 1404 476 327 53 19 chr4 107436941 107437206 -48192914 + L1MA4A LINE L1 5624 5897 -403 7 1404 324 0 0 0 chr4 107437206 107437242 -48192878 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1404 809 103 31 23 chr4 107437253 107437382 -48192738 - B1_Mur4 SINE Alu -20 130 1 7 1404 332 207 16 139 chr4 107437268 107437397 -48192723 - MT2B LTR ERVL -337 264 152 7 1404 336 24 0 0 chr4 107438031 107438072 -48192048 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1404 249 296 49 105 chr4 107438289 107438451 -48191669 - RMER17C LTR ERVK -72 338 186 7 1404 250 344 45 38 chr4 107438523 107438656 -48191464 + B4A SINE B4 159 292 0 7 1404 488 234 81 0 chr4 107438755 107438879 -48191241 + RSINE1 SINE B4 28 161 -4 7 1404 322 308 115 0 chr4 107438977 107439081 -48191039 - MLT1J2 LTR MaLR -302 146 31 7 1404 785 322 130 25 chr4 107439287 107439638 -48190482 + L1M5 LINE L1 3806 4192 -1954 7 1404 933 85 158 6 chr4 107439638 107439803 -48190317 - B2_Mm2 SINE B2 -4 191 2 7 1404 785 322 130 25 chr4 107439803 107440165 -48189955 + L1M5 LINE L1 4193 4594 -1552 7 1404 515 262 0 94 chr4 107440170 107440330 -48189790 + RSINE1 SINE B4 2 146 -19 7 1404 483 33 0 0 chr4 107440336 107440397 -48189723 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1404 241 375 20 7 chr4 107440707 107440860 -48189260 + L1M5 LINE L1 4893 5047 -1099 7 1404 390 264 66 0 chr4 107440898 107441019 -48189101 - RMER15 LTR ERVL -40 535 407 7 1404 209 419 0 0 chr4 107441512 107441617 -48188503 - L3 LINE CR1 -15 4474 4370 7 1404 208 231 0 0 chr4 107441918 107441957 -48188163 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1404 220 210 143 16 chr4 107442147 107442210 -48187910 - B4A SINE B4 -220 72 2 7 1404 1577 21 21 0 chr4 107442220 107442408 -48187712 - B2_Mm1t SINE B2 0 193 2 7 1404 465 223 0 97 chr4 107442598 107442732 -48187388 - ID_B1 SINE B4 -7 217 97 7 1404 272 258 10 106 chr4 107442641 107442745 -48187375 - PB1D10 SINE Alu -22 95 2 7 1404 263 281 68 26 chr4 107443176 107443293 -48186827 + B1_Mm SINE Alu 2 123 -24 7 1404 978 144 34 6 chr4 107443315 107443490 -48186630 + URR1B DNA MER1_type 46 225 0 7 1404 578 48 0 12 chr4 107443592 107443676 -48186444 + L1Md_F3 LINE L1 6500 6582 -2 7 1404 252 0 0 0 chr4 107444070 107444098 -48186022 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1404 331 253 112 88 chr4 107444423 107444541 -48185579 + RSINE1 SINE B4 2 112 -53 7 1404 724 63 18 0 chr4 107444541 107444652 -48185468 + (CA)n Simple_repeat Simple_repeat 1 113 0 7 1404 331 253 112 88 chr4 107444652 107444693 -48185427 + RSINE1 SINE B4 113 164 -1 7 1404 275 312 12 24 chr4 107444872 107444954 -48185166 + RSINE1 SINE B4 84 164 -1 7 1404 912 319 88 7 chr4 107445124 107445559 -48184561 + L1M4 LINE L1 5299 5773 -2109 7 1404 549 257 0 29 chr4 107445794 107445934 -48184186 - B1_Mur3 SINE Alu -9 140 5 7 1404 881 243 28 9 chr4 107445956 107446168 -48183952 - B3 SINE B2 0 216 1 7 1404 232 184 0 20 chr4 107446173 107446223 -48183897 + MIRb SINE MIR 182 230 -38 7 1404 252 0 0 0 chr4 107446280 107446308 -48183812 + (CCA)n Simple_repeat Simple_repeat 3 30 0 7 1404 267 306 0 0 chr4 107446480 107446542 -48183578 + B4A SINE B4 85 146 -146 7 1404 416 238 69 10 chr4 107446489 107446591 -48183529 + PB1D10 SINE Alu 9 116 -1 7 1404 292 255 149 0 chr4 107447691 107447785 -48182335 - RMER15 LTR ERVL -55 520 413 7 1404 254 272 114 54 chr4 107448302 107448469 -48181651 - MLT1H LTR MaLR -178 371 195 7 1404 639 0 0 0 chr4 107448959 107449030 -48181090 + (GGGA)n Simple_repeat Simple_repeat 1 71 0 7 1404 618 187 204 43 chr4 107449886 107450048 -48180072 + URR1B DNA MER1_type 1 188 -37 7 1404 547 174 129 203 chr4 107450651 107450961 -48179159 - RLTR25B LTR ERVK 0 1028 742 7 1404 2807 157 229 14 chr4 107451195 107451824 -48178296 - RLTR25B LTR ERVK -264 764 1 7 1404 340 285 69 0 chr4 107452091 107452221 -48177899 - MER113 DNA MER1_type -107 414 276 7 1404 396 0 0 0 chr4 107452313 107452357 -48177763 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1404 563 215 11 4 chr4 107452367 107452495 -48177625 + B1_Mur1 SINE Alu 1 128 -22 7 1404 371 287 20 0 chr4 107452519 107452620 -48177500 + B4A SINE B4 178 280 -12 7 1404 190 322 148 43 chr4 107452849 107453011 -48177109 - MIR SINE MIR -81 181 3 7 1404 281 239 0 53 chr4 107453060 107453135 -48176985 + ID4 SINE ID 10 80 -3 7 1404 287 268 203 0 chr4 107453300 107453423 -48176697 - MER113A DNA MER1_type -141 173 26 7 1404 1362 103 113 0 chr4 107453455 107453658 -48176462 - URR1A DNA MER1_type 0 226 1 7 1404 1050 186 42 42 chr4 107454525 107454856 -48175264 - RMER17C LTR ERVK 0 410 80 7 1404 891 189 18 40 chr4 107454864 107455167 -48174953 - RMER17C LTR ERVK -327 482 2 7 1404 475 231 22 0 chr4 107455721 107455812 -48174308 + ID_B1 SINE B4 110 202 -22 7 1404 290 285 56 15 chr4 107456082 107456210 -48173910 + B1F2 SINE Alu 1 149 0 7 1404 280 281 0 0 chr4 107456224 107456288 -48173832 - ID4_ SINE ID -15 68 5 7 1404 186 276 123 23 chr4 107456339 107456469 -48173651 + L2a LINE L2 3246 3388 -38 7 1404 205 163 41 0 chr4 107457189 107457238 -48172882 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 7 1404 465 19 0 0 chr4 107457240 107457294 -48172826 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1404 735 303 88 4 chr4 107457304 107457543 -48172577 - B4A SINE B4 -33 259 1 7 1404 377 290 69 34 chr4 107458424 107458618 -48171502 + MER102a DNA MER1_type 56 259 -71 7 1404 741 82 0 256 chr4 107459206 107459386 -48170734 - B1_Mus1 SINE Alu -13 135 2 7 1404 234 0 0 0 chr4 107459404 107459430 -48170690 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1404 445 324 63 40 chr4 107459933 107460155 -48169965 - MIR SINE MIR -23 239 13 7 1404 285 328 16 24 chr4 107460711 107460836 -48169284 - MIRb SINE MIR -57 211 88 7 1404 1174 130 119 5 chr4 107461909 107462110 -48168010 + URR1B DNA MER1_type 2 225 0 7 1404 394 253 0 21 chr4 107462296 107462393 -48167727 + ID_B1 SINE B4 114 208 -16 8 1404 225 277 92 41 chr4 107462480 107462578 -48167542 + MLT1I LTR MaLR 307 409 -2 8 1404 276 30 0 0 chr4 107462583 107462616 -48167504 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1404 624 27 0 0 chr4 107462616 107462690 -48167430 + (TTC)n Simple_repeat Simple_repeat 1 74 0 8 1404 743 270 26 11 chr4 107462756 107462947 -48167173 + B3A SINE B2 1 194 -4 8 1404 270 194 0 0 chr4 107462947 107463009 -48167111 + GA-rich Low_complexity Low_complexity 1 62 0 8 1404 407 232 124 31 chr4 107463212 107463341 -48166779 - B1F2 SINE Alu -7 142 2 8 1404 338 277 47 13 chr4 107463347 107463581 -48166539 - L1M5 LINE L1 -806 5434 5195 8 1404 339 315 0 7 chr4 107463869 107464016 -48166104 + G-rich Low_complexity Low_complexity 2 147 0 8 1404 461 287 76 6 chr4 107464185 107464357 -48165763 + HAL1 LINE L1 1437 1620 -887 8 1404 1194 104 19 24 chr4 107464616 107464854 -48165266 + ORR1B1 LTR MaLR 92 394 0 8 1404 327 299 100 67 chr4 107464856 107465120 -48165000 + HAL1 LINE L1 1750 2030 -477 8 1404 4581 61 41 0 chr4 107465120 107465681 -48164439 + MT2B2 LTR ERVL 1 584 0 8 1404 327 299 100 67 chr4 107465681 107465757 -48164363 + HAL1 LINE L1 2031 2101 -406 8 1404 312 273 35 21 chr4 107465816 107465958 -48164162 + L1M2 LINE L1 5105 5248 -895 8 1404 750 263 0 23 chr4 107465983 107466159 -48163961 + B3A SINE B2 1 171 -27 8 1404 315 0 0 0 chr4 107466159 107466194 -48163926 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1404 395 283 60 111 chr4 107466194 107466216 -48163904 + B2_Mm2 SINE B2 165 189 -6 8 1404 940 299 98 55 chr4 107466219 107466913 -48163207 + L1MB3 LINE L1 5273 5996 -187 8 1404 231 250 0 0 chr4 107466931 107466983 -48163137 + L1MB3 LINE L1 6059 6110 -73 8 1404 349 271 110 22 chr4 107466986 107467122 -48162998 - MTE2a LTR MaLR -1 378 231 8 1404 606 284 28 0 chr4 107467174 107467315 -48162805 + RSINE1 SINE B4 13 157 -8 8 1404 1161 213 19 5 chr4 107467500 107467712 -48162408 + B3 SINE B2 2 216 0 8 1404 1369 62 0 33 chr4 107467715 107467873 -48162247 + B2_Mm2 SINE B2 2 158 -37 8 1404 207 0 0 0 chr4 107467873 107467896 -48162224 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1404 1369 62 0 33 chr4 107467896 107467919 -48162201 + B2_Mm2 SINE B2 159 177 -18 8 1404 815 182 0 47 chr4 107467936 107468086 -48162034 + B1_Mur3 SINE Alu 5 147 -2 8 1404 384 200 173 0 chr4 107468292 107468402 -48161718 + MER113A DNA MER1_type 97 225 -89 8 1404 917 310 55 60 chr4 107468404 107468680 -48161440 + MER2 DNA MER2_type 1 279 -66 8 1404 370 269 83 0 chr4 107468680 107468788 -48161332 - PB1D10 SINE Alu 0 117 1 8 1404 917 310 55 60 chr4 107468788 107468858 -48161262 + MER2 DNA MER2_type 280 345 0 8 1404 542 304 61 20 chr4 107469355 107469553 -48160567 + MLT1F LTR MaLR 2 207 -341 8 1404 416 305 46 13 chr4 107469553 107469706 -48160414 - Lx7 LINE L1 -1983 5713 5522 8 1404 850 169 256 0 chr4 107469717 107469889 -48160231 - B3 SINE B2 0 216 1 8 1404 422 335 0 33 chr4 107469893 107470075 -48160045 - Lx7 LINE L1 -427 5453 5278 8 1404 724 298 120 15 chr4 107470140 107470399 -48159721 + B4 SINE B4 5 290 -2 8 1404 254 260 198 45 chr4 107470839 107471016 -48159104 + MLT1F LTR MaLR 198 401 -147 8 1404 841 193 14 0 chr4 107471042 107471187 -48158933 - B1_Mur2 SINE Alu -2 147 1 8 1404 417 234 43 0 chr4 107471273 107471367 -48158753 - PB1D10 SINE Alu -1 116 19 8 1404 339 167 0 0 chr4 107471437 107471503 -48158617 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1404 744 236 12 37 chr4 107471505 107471668 -48158452 - RSINE1 SINE B4 -4 161 3 8 1404 236 284 54 0 chr4 107471670 107471744 -48158376 - MIR SINE MIR -115 147 70 8 1404 219 295 0 82 chr4 107472454 107472539 -48157581 - PB1D10 SINE Alu -13 104 27 8 1404 222 373 58 58 chr4 107472642 107472813 -48157307 - MIR SINE MIR 0 262 92 8 1404 223 323 85 16 chr4 107473064 107473193 -48156927 + L2 LINE L2 2850 2987 -432 8 1404 1410 56 0 0 chr4 107473762 107473942 -48156178 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1404 251 293 20 10 chr4 107474698 107474798 -48155322 + G-rich Low_complexity Low_complexity 3 103 0 8 1404 21 71 0 0 chr4 107474804 107474846 -48155274 + GC_rich Low_complexity Low_complexity 1 42 0 8 1404 225 154 0 0 chr4 107474890 107474929 -48155191 + (CGG)n Simple_repeat Simple_repeat 2 40 0 8 1404 34 55 0 0 chr4 107474961 107475016 -48155104 + GC_rich Low_complexity Low_complexity 1 55 0 8 1404 218 191 0 0 chr4 107475040 107475082 -48155038 + (CTG)n Simple_repeat Simple_repeat 2 43 0 8 1404 21 36 0 0 chr4 107475329 107475357 -48154763 + GC_rich Low_complexity Low_complexity 1 28 0 8 1404 21 36 0 0 chr4 107476444 107476472 -48153648 + GC_rich Low_complexity Low_complexity 1 28 0 8 1404 359 302 38 15 chr4 107477090 107477221 -48152899 - RSINE1 SINE B4 -29 136 3 8 1404 218 296 94 112 chr4 107477643 107477803 -48152317 - MIRb SINE MIR -69 199 43 8 1404 507 250 101 13 chr4 107478160 107478318 -48151802 + B3 SINE B2 2 173 -43 8 1404 853 186 0 7 chr4 107478638 107478784 -48151336 + B1_Mur1 SINE Alu 5 149 0 8 1404 184 330 85 0 chr4 107478795 107478889 -48151231 - MIR SINE MIR -62 146 45 8 1405 965 176 86 77 chr4 107480003 107480225 -48149895 + URR1A DNA MER1_type 3 226 0 8 1405 180 0 0 0 chr4 107481016 107481036 -48149084 + (CTG)n Simple_repeat Simple_repeat 1 20 0 8 1405 342 67 0 0 chr4 107481549 107481594 -48148526 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 8 1405 567 215 0 9 chr4 107481620 107481728 -48148392 - PB1D7 SINE Alu -1 119 13 8 1405 1140 217 19 0 chr4 107482948 107483160 -48146960 - B3 SINE B2 0 216 1 8 1405 214 237 57 0 chr4 107483983 107484057 -48146063 + MIR SINE MIR 65 140 -128 8 1405 259 271 22 37 chr4 107484851 107484985 -48145135 + Lx7 LINE L1 7565 7696 0 8 1405 916 145 34 20 chr4 107485586 107485941 -48144179 + (TG)n Simple_repeat Simple_repeat 1 360 0 8 1405 554 305 121 23 chr4 107485964 107486229 -48143891 - B4A SINE B4 -1 291 1 8 1405 230 348 0 0 chr4 107486963 107487032 -48143088 + MIRc SINE MIR 53 121 -147 8 1405 277 333 0 35 chr4 107489223 107489310 -48140810 + MER81 DNA AcHobo 2 85 -29 8 1405 282 277 88 18 chr4 107489798 107489912 -48140208 - MIRc SINE MIR -24 244 123 8 1405 248 303 0 0 chr4 107490074 107490150 -48139970 + G-rich Low_complexity Low_complexity 4 79 0 8 1405 244 176 0 29 chr4 107490845 107490915 -48139205 + (TGGG)n Simple_repeat Simple_repeat 3 70 0 8 1405 195 327 9 84 chr4 107491213 107491320 -48138800 - MIRm SINE MIR -108 168 70 8 1405 1349 84 45 0 chr4 107491645 107491823 -48138297 - B2_Mm2 SINE B2 -9 186 1 8 1405 192 322 53 11 chr4 107492437 107492531 -48137589 - MIR SINE MIR -140 122 25 8 1405 222 91 0 0 chr4 107492580 107492613 -48137507 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1405 23 0 0 0 chr4 107493356 107493379 -48136741 + GC_rich Low_complexity Low_complexity 1 23 0 8 1405 191 244 233 9 chr4 107494086 107494202 -48135918 - MIRc SINE MIR -104 164 23 8 1405 754 200 146 45 chr4 107494487 107494686 -48135434 + ID_B1 SINE B4 3 221 -3 8 1405 227 167 0 0 chr4 107494724 107494760 -48135360 + ID4_ SINE ID 39 74 -9 8 1405 186 143 0 0 chr4 107495212 107495247 -48134873 + (CCCCCT)n Simple_repeat Simple_repeat 2 36 0 8 1405 1850 118 84 6 chr4 107495393 107495726 -48134394 - RLTR15 LTR ERVK 0 359 1 8 1405 237 159 0 0 chr4 107496651 107496695 -48133425 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 8 1405 342 45 0 0 chr4 107496696 107496740 -48133380 + (CATA)n Simple_repeat Simple_repeat 2 45 0 8 1405 576 258 101 11 chr4 107496749 107496937 -48133183 - B4A SINE B4 -80 212 8 8 1405 293 279 151 0 chr4 107497664 107497750 -48132370 - PB1D9 SINE Alu -20 100 2 8 1405 212 281 50 58 chr4 107498181 107498302 -48131818 - MIRm SINE MIR -132 144 25 8 1405 435 19 0 0 chr4 107498994 107499046 -48131074 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1405 457 103 20 20 chr4 107499049 107499148 -48130972 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 8 1405 574 49 24 0 chr4 107500089 107500171 -48129949 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1405 244 365 143 12 chr4 107501110 107501271 -48128849 + Charlie15a DNA MER1_type 28 209 -15 2 1405 252 270 58 83 chr4 107502245 107502366 -48127754 + MER103 DNA DNA 11 128 -38 3 1405 221 260 19 23 chr4 107503297 107503393 -48126727 - MIRm SINE MIR -147 129 31 4 1405 225 229 129 0 chr4 107504267 107504337 -48125783 + MIRb SINE MIR 108 186 -82 5 1405 270 318 119 23 chr4 107505474 107505651 -48124469 + MER58A DNA MER1_type 25 218 -6 6 1405 187 373 36 9 chr4 107506073 107506184 -48123936 - MIRc SINE MIR -135 133 20 7 1405 346 331 56 38 chr4 107507676 107507836 -48122284 - MIRb SINE MIR -21 247 85 8 1405 462 18 0 0 chr4 107508332 107508387 -48121733 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1405 193 388 17 33 chr4 107509670 107509790 -48120330 + MIR SINE MIR 16 133 -75 1 1405 223 328 32 65 chr4 107511801 107511925 -48118195 + MIRb SINE MIR 11 130 -138 1 1405 439 296 95 38 chr4 107512033 107512244 -48117876 - MLT1A0 LTR MaLR -2 363 141 1 1405 421 231 47 14 chr4 107512451 107512596 -48117524 - L1MA4 LINE L1 -370 5930 5772 1 1405 671 218 0 4 chr4 107512606 107512859 -48117261 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1405 257 186 99 14 chr4 107513267 107513338 -48116782 + B3A SINE B2 1 77 -121 1 1405 187 330 74 11 chr4 107513416 107513511 -48116609 + MER5A DNA MER1_type 53 153 -36 1 1405 1162 55 7 0 chr4 107513695 107513841 -48116279 - B1_Mus1 SINE Alu 0 148 2 1 1405 501 127 0 0 chr4 107513857 107513936 -48116184 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1 1405 774 156 0 8 chr4 107513940 107514063 -48116057 - B1_Mus2 SINE Alu -16 131 10 1 1405 304 181 6 40 chr4 107514252 107514425 -48115695 + C-rich Low_complexity Low_complexity 1 167 0 2 1405 455 118 13 0 chr4 107514613 107514689 -48115431 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1405 444 346 142 0 chr4 107514789 107515000 -48115120 - MIR SINE MIR -1 261 21 2 1405 299 197 197 0 chr4 107515024 107515090 -48115030 + MIRb SINE MIR 156 234 -34 2 1405 487 276 90 38 chr4 107516065 107516251 -48113869 - MIRb SINE MIR -66 202 4 2 1405 783 97 210 13 chr4 107516957 107517114 -48113006 + B2_Mm1t SINE B2 6 193 0 2 1405 325 287 70 42 chr4 107517611 107517753 -48112367 + MamRep564 Unknown Unknown 80 225 -132 2 1405 284 297 135 3 chr4 107517920 107518068 -48112052 + MIRb SINE MIR 27 176 -32 2 1405 205 303 34 76 chr4 107519322 107519440 -48110680 - MIR3 SINE MIR -94 114 2 2 1405 295 288 25 8 chr4 107519842 107519961 -48110159 + MIR3 SINE MIR 81 201 -7 2 1405 220 265 0 0 chr4 107522120 107522169 -48107951 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1405 193 279 125 9 chr4 107523390 107523502 -48106618 + L3 LINE CR1 4215 4339 -150 3 1405 444 37 0 0 chr4 107524311 107524365 -48105755 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1405 762 312 124 20 chr4 107524688 107525426 -48104694 - L2a LINE L2 -130 3296 2475 3 1405 276 326 49 35 chr4 107528700 107528843 -48101277 - L3 LINE CR1 -105 4384 4240 3 1405 1034 101 0 0 chr4 107531919 107532058 -48098062 + B1_Mus1 SINE Alu 2 140 -8 3 1405 683 0 24 0 chr4 107532077 107532159 -48097961 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 3 1405 192 333 105 0 chr4 107532295 107532400 -48097720 + MIRb SINE MIR 117 232 -36 3 1405 229 263 12 50 chr4 107532832 107532912 -48097208 - Charlie4z DNA MER1_type -61 106 30 3 1405 577 224 62 137 chr4 107532922 107533149 -48096971 + B3 SINE B2 1 210 -6 3 1405 580 165 123 8 chr4 107534250 107534372 -48095748 + B1_Mur2 SINE Alu 1 136 -13 4 1405 1029 235 90 4 chr4 107534989 107535233 -48094887 - B4A SINE B4 0 292 28 4 1405 1462 21 15 64 chr4 107535510 107535712 -48094408 + B2_Mm1a SINE B2 2 193 0 4 1405 207 0 0 0 chr4 107535735 107535758 -48094362 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1405 383 257 27 9 chr4 107535762 107535872 -48094248 - PB1D10 SINE Alu -5 112 1 4 1405 400 317 64 50 chr4 107535946 107536165 -48093955 - MIRb SINE MIR -37 231 10 4 1405 204 275 58 0 chr4 107536342 107536411 -48093709 + MIRc SINE MIR 11 83 -185 4 1405 188 261 0 0 chr4 107537046 107537092 -48093028 - L2a LINE L2 -9 3417 3372 4 1405 545 300 14 21 chr4 107537161 107537304 -48092816 + RSINE1 SINE B4 9 150 -15 4 1405 2394 114 3 0 chr4 107537778 107538130 -48091990 - MTC LTR MaLR 0 421 69 4 1405 270 73 0 0 chr4 107538131 107538172 -48091948 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1405 4203 43 0 0 chr4 107538179 107538695 -48091425 - L1_Mus1 LINE L1 -2 6565 6050 5 1405 517 82 11 86 chr4 107538695 107538782 -48091338 - MTC LTR MaLR -340 81 1 4 1405 455 362 129 28 chr4 107539195 107539649 -48090471 - L1M4 LINE L1 -757 5386 4894 5 1405 259 310 80 11 chr4 107539853 107540029 -48090091 - L1MC LINE L1 -1489 4657 4470 5 1405 318 313 64 43 chr4 107540172 107540312 -48089808 - B1F SINE Alu -3 146 4 5 1405 593 283 13 66 chr4 107541064 107541291 -48088829 + B3 SINE B2 2 216 0 5 1405 321 155 0 0 chr4 107541772 107541830 -48088290 + CT-rich Low_complexity Low_complexity 1 58 0 5 1405 184 282 82 27 chr4 107541830 107541903 -48088217 - L2b LINE L2 -1 3425 3349 5 1405 204 258 100 30 chr4 107542224 107542324 -48087796 + L2c LINE L2 3278 3384 -3 5 1405 240 293 95 0 chr4 107542612 107542728 -48087392 - L2b LINE L2 -6 3369 3243 5 1405 411 104 91 0 chr4 107543321 107543398 -48086722 + B1_Mus2 SINE Alu 53 136 -11 5 1405 557 317 70 0 chr4 107543445 107543672 -48086448 - MIRb SINE MIR -14 254 12 6 1405 231 0 77 0 chr4 107543790 107543829 -48086291 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 6 1405 256 291 125 25 chr4 107543929 107544049 -48086071 - MIRc SINE MIR -52 216 85 6 1405 222 37 0 0 chr4 107544360 107544387 -48085733 + (G)n Simple_repeat Simple_repeat 1 27 0 6 1405 302 286 212 11 chr4 107544615 107544801 -48085319 + MIRb SINE MIR 6 222 -46 6 1405 651 37 0 0 chr4 107545016 107545098 -48085022 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1405 788 178 24 6 chr4 107546007 107546171 -48083949 + URR1B DNA MER1_type 59 225 0 6 1405 21 0 0 0 chr4 107548961 107548982 -48081138 + AT_rich Low_complexity Low_complexity 1 21 0 6 1405 26 0 0 0 chr4 107548990 107549016 -48081104 + AT_rich Low_complexity Low_complexity 1 26 0 6 1405 345 263 102 0 chr4 107549855 107549992 -48080128 + L2 LINE L2 2041 2191 -1228 6 1405 2441 123 194 26 chr4 107549996 107550496 -48079624 - MT2B2 LTR ERVL 0 584 1 7 1405 636 164 12 99 chr4 107550704 107550866 -48079254 + B1_Mur1 SINE Alu 1 148 -1 7 1405 903 90 75 0 chr4 107550921 107551055 -48079065 - B1_Mus2 SINE Alu 0 147 4 7 1405 603 248 0 39 chr4 107551208 107551363 -48078757 - B1_Mur1 SINE Alu 0 149 1 7 1405 254 320 62 31 chr4 107551248 107551377 -48078743 - B4A SINE B4 -89 203 71 7 1405 1040 45 30 0 chr4 107551459 107551593 -48078527 + B1_Mus1 SINE Alu 1 138 -10 7 1405 195 42 0 0 chr4 107551593 107551617 -48078503 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1405 242 240 92 36 chr4 107551910 107552011 -48078109 - PB1D9 SINE Alu -6 143 38 7 1405 183 328 94 8 chr4 107552762 107552879 -48077241 - L2a LINE L2 -7 3419 3293 7 1405 305 344 7 55 chr4 107553703 107553897 -48076223 + MIRb SINE MIR 12 197 -65 7 1405 561 256 60 0 chr4 107554496 107554553 -48075567 + ID SINE ID 19 83 -141 8 1405 263 343 19 56 chr4 107554553 107554661 -48075459 + PB1D10 SINE Alu 1 104 -13 8 1405 230 300 0 0 chr4 107554743 107554803 -48075317 + ID_B1 SINE B4 94 153 -71 8 1405 488 213 131 0 chr4 107554820 107554942 -48075178 + B1_Mur4 SINE Alu 6 143 -7 8 1405 368 250 184 0 chr4 107555314 107555507 -48074613 - MLT1A1 LTR MaLR 0 408 181 8 1405 290 167 19 0 chr4 107555613 107555667 -48074453 + ORR1C1 LTR MaLR 1 55 -323 8 1405 397 205 39 0 chr4 107555900 107555978 -48074142 - B3 SINE B2 -134 82 2 8 1405 246 266 0 102 chr4 107556128 107556216 -48073904 + MT2B LTR ERVL 163 241 -360 8 1405 748 187 14 7 chr4 107556138 107556278 -48073842 + B1_Mur1 SINE Alu 9 149 0 8 1405 335 274 22 157 chr4 107556319 107556372 -48073748 + L1MC LINE L1 5120 5161 -985 8 1405 892 61 5 249 chr4 107556372 107556569 -48073551 + B1_Mur3 SINE Alu 1 149 0 9 1405 335 274 22 157 chr4 107556569 107556649 -48073471 + L1MC LINE L1 5162 5235 -911 8 1405 276 310 55 55 chr4 107557236 107557400 -48072720 + RSINE1 SINE B4 2 165 0 9 1405 1217 55 0 0 chr4 107557711 107557857 -48072263 + B1_Mus2 SINE Alu 2 147 0 9 1405 271 260 144 38 chr4 107558044 107558176 -48071944 - MER2 DNA MER2_type -174 171 26 9 1405 344 267 0 82 chr4 107558678 107558788 -48071332 - B1_Mur2 SINE Alu -5 144 44 9 1405 338 216 32 105 chr4 107558841 107558893 -48071227 + PB1D10 SINE Alu 1 51 -66 9 1405 2122 152 113 33 chr4 107558893 107559316 -48070804 + RMER6B LTR ERVK 5 461 0 9 1405 338 216 32 105 chr4 107559316 107559387 -48070733 + PB1D10 SINE Alu 52 115 -2 9 1405 297 288 128 0 chr4 107560416 107560538 -48069582 - B1_Mm SINE Alu -8 141 7 9 1405 327 212 37 109 chr4 107560470 107560562 -48069558 - ID_B1 SINE B4 -59 165 78 9 1405 231 225 0 0 chr4 107560606 107560646 -48069474 + ID4 SINE ID 4 43 -40 9 1405 1443 58 6 0 chr4 107560685 107560859 -48069261 - B2_Mm2 SINE B2 -18 177 3 1 1405 517 250 89 54 chr4 107561193 107561296 -48068824 + B3 SINE B2 3 114 -102 1 1405 851 202 41 161 chr4 107561296 107561662 -48068458 - RLTRETN_Mm LTR ERVK 0 322 1 1 1405 517 250 89 54 chr4 107561662 107561761 -48068359 + B3 SINE B2 115 212 -4 1 1405 1013 101 7 45 chr4 107561781 107561936 -48068184 + B1_Mur3 SINE Alu 1 149 0 1 1405 410 239 126 63 chr4 107562987 107563130 -48066990 - ID_B1 SINE B4 0 224 73 1 1405 259 288 24 36 chr4 107563834 107563917 -48066203 + B4 SINE B4 70 151 -141 1 1405 378 262 49 0 chr4 107563856 107563966 -48066154 + B1F2 SINE Alu 5 116 -1 1 1405 228 206 51 192 chr4 107564345 107564423 -48065697 - ID4_ SINE ID -15 68 2 1 1405 220 280 58 39 chr4 107564426 107564530 -48065590 + MIR3 SINE MIR 85 190 -18 1 1405 478 251 31 20 chr4 107564957 107565090 -48065030 - PB1D10 SINE Alu -14 135 6 1 1405 237 324 93 19 chr4 107564997 107565104 -48065016 - B4 SINE B4 -99 193 79 1 1405 309 68 0 0 chr4 107565333 107565377 -48064743 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1405 391 175 331 13 chr4 107565386 107565520 -48064600 - B2_Mm2 SINE B2 -10 206 3 1 1405 503 292 121 14 chr4 107566156 107566371 -48063749 - MIRb SINE MIR -3 265 28 1 1405 264 222 0 0 chr4 107566465 107566519 -48063601 + ID_B1 SINE B4 169 222 -2 1 1405 663 180 36 36 chr4 107566535 107566673 -48063447 + B1_Mur2 SINE Alu 1 138 -11 1 1405 929 179 14 0 chr4 107566872 107567012 -48063108 + B1_Mur1 SINE Alu 2 143 -6 1 1405 248 77 26 0 chr4 107567022 107567061 -48063059 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1 1405 575 210 180 11 chr4 107567099 107567289 -48062831 + MTD LTR MaLR 163 405 -14 1 1405 300 250 44 22 chr4 107567612 107567702 -48062418 - MER82 DNA MER2_type -258 395 304 1 1405 1028 318 84 46 chr4 107567795 107568790 -48061330 - RMER12B LTR ERVK -243 1161 1 1 1405 656 277 145 5 chr4 107568811 107569032 -48061088 - MER82 DNA MER2_type -340 313 62 1 1405 226 297 46 86 chr4 107570261 107570412 -48059708 - Arthur1 DNA Tip100 -3137 810 666 1 1405 718 223 62 22 chr4 107570420 107570599 -48059521 - B3A SINE B2 -11 187 2 1 1405 232 154 0 0 chr4 107570762 107570801 -48059319 - RLTR15 LTR ERVK 0 359 321 1 1405 454 210 504 9 chr4 107570793 107571013 -48059107 + RLTR11A2 LTR ERVK 199 527 0 1 1405 198 268 149 11 chr4 107572171 107572258 -48057862 + MIR SINE MIR 42 140 -68 1 1405 525 285 24 0 chr4 107572455 107572578 -48057542 - RSINE1 SINE B4 -38 127 2 1 1405 361 295 120 27 chr4 107572598 107572748 -48057372 - RSINE1 SINE B4 0 165 2 1 1405 1015 214 71 53 chr4 107573202 107573287 -48056833 - RMER15-int LTR ERVL -2926 2073 1984 1 1405 2902 111 14 9 chr4 107573287 107573706 -48056414 + MTC LTR MaLR 1 421 0 1 1405 1015 214 71 53 chr4 107573706 107573886 -48056234 - RMER15-int LTR ERVL -3016 1983 1803 1 1405 1729 261 103 30 chr4 107573895 107574079 -48056041 - RMER15-int LTR ERVL -3311 1688 1496 1 1405 216 0 0 0 chr4 107574079 107574103 -48056017 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 1 1405 1729 261 103 30 chr4 107574103 107574135 -48055985 - RMER15-int LTR ERVL -3504 1495 1458 1 1405 564 56 0 0 chr4 107574135 107574207 -48055913 + (TCCCC)n Simple_repeat Simple_repeat 4 75 0 1 1405 1729 261 103 30 chr4 107574207 107574667 -48055453 - RMER15-int LTR ERVL -3542 1457 961 1 1405 600 312 21 8 chr4 107574899 107575135 -48054985 - RMER15-int LTR ERVL -4561 438 200 1 1405 463 292 26 33 chr4 107575333 107575485 -48054635 - RMER15 LTR ERVL -17 558 408 1 1405 679 175 35 0 chr4 107575616 107575730 -48054390 + B3 SINE B2 13 130 -86 1 1405 29 0 0 0 chr4 107575742 107575771 -48054349 + AT_rich Low_complexity Low_complexity 1 29 0 1 1405 274 145 143 14 chr4 107575775 107575845 -48054275 + 4.5SRNA scRNA scRNA 8 86 -8 1 1405 633 142 113 0 chr4 107575785 107575891 -48054229 + B1_Mus1 SINE Alu 31 148 0 1 1405 1123 92 0 0 chr4 107575892 107576033 -48054087 + B1_Mus2 SINE Alu 1 141 -6 1 1405 257 0 30 0 chr4 107576034 107576067 -48054053 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1405 1151 68 7 0 chr4 107576068 107576214 -48053906 + B1_Mm SINE Alu 1 147 0 1 1405 309 256 91 33 chr4 107576215 107576336 -48053784 + L1MEf LINE L1 1933 2060 -4140 1 1405 350 255 31 31 chr4 107577356 107577453 -48052667 + ID_B1 SINE B4 79 175 -49 1 1405 474 223 19 10 chr4 107577370 107577474 -48052646 + PB1D10 SINE Alu 12 116 -1 1 1405 726 211 0 33 chr4 107577479 107577631 -48052489 + B1_Mur1 SINE Alu 2 148 -1 1 1405 917 183 88 10 chr4 107577634 107577827 -48052293 + B3 SINE B2 2 209 -7 1 1405 211 309 0 18 chr4 107578205 107578261 -48051859 + MIR3 SINE MIR 141 195 -13 1 1405 3227 116 119 6 chr4 107578292 107578821 -48051299 - RLTR1D LTR ERV1 -16 589 1 1 1405 584 120 139 0 chr4 107578829 107578937 -48051183 + B1_Mur4 SINE Alu 27 149 -1 1 1405 1207 36 0 0 chr4 107579039 107579177 -48050943 + B1_Mus1 SINE Alu 2 139 -9 1 1405 207 0 0 0 chr4 107579177 107579200 -48050920 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1405 544 239 168 65 chr4 107580961 107581219 -48048901 - L1MB7 LINE L1 -242 5932 5655 1 1405 1158 88 0 0 chr4 107581259 107581406 -48048714 + B1_Mus2 SINE Alu 1 147 0 1 1405 180 0 0 0 chr4 107581407 107581427 -48048693 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 1405 266 24 0 68 chr4 107581462 107581506 -48048614 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1405 815 170 57 0 chr4 107581506 107581647 -48048473 - B1_Mur2 SINE Alu 0 149 1 1 1405 213 381 47 23 chr4 107581730 107581816 -48048304 - PB1D10 SINE Alu -13 104 17 1 1405 553 294 36 29 chr4 107582386 107582526 -48047594 + RSINE1 SINE B4 25 165 0 1 1405 368 277 172 13 chr4 107582584 107583031 -48047089 + HAL1 LINE L1 1067 1584 -923 1 1405 252 86 0 0 chr4 107583260 107583295 -48046825 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1405 872 161 49 0 chr4 107583380 107583523 -48046597 + B1_Mur4 SINE Alu 1 150 0 1 1405 294 329 121 18 chr4 107583530 107583812 -48046308 + HAL1 LINE L1 1914 2224 -283 1 1405 335 261 148 0 chr4 107583941 107584029 -48046091 + PB1D10 SINE Alu 1 101 -16 1 1405 833 240 28 17 chr4 107584158 107584336 -48045784 - B3A SINE B2 -16 182 3 1 1405 411 248 160 0 chr4 107584388 107584513 -48045607 + RSINE1 SINE B4 3 147 -18 1 1405 410 187 117 36 chr4 107584556 107584667 -48045453 + PB1D7 SINE Alu 1 120 0 1 1405 538 148 0 0 chr4 107584680 107584768 -48045352 - 4.5SRNA scRNA scRNA -2 92 5 1 1405 435 300 97 16 chr4 107585562 107585742 -48044378 + MIRb SINE MIR 11 206 -62 1 1405 352 293 128 113 chr4 107585990 107586045 -48044075 - MLT1C LTR MaLR 0 390 343 1 1405 768 200 14 20 chr4 107586045 107586193 -48043927 + B1_Mur2 SINE Alu 1 147 -2 1 1405 533 280 76 67 chr4 107586193 107586464 -48043656 - MLT1C LTR MaLR -48 342 59 1 1405 236 161 31 138 chr4 107587096 107587161 -48042959 + ID4 SINE ID 2 59 -24 1 1405 23 0 0 0 chr4 107587254 107587277 -48042843 + AT_rich Low_complexity Low_complexity 1 23 0 1 1405 227 222 0 6 chr4 107587440 107587488 -48042632 + B4A SINE B4 79 124 -168 1 1405 2906 158 62 11 chr4 107587487 107587576 -48042544 - RLTR20D LTR ERVK -4 564 474 1 1405 204 125 0 0 chr4 107587576 107587608 -48042512 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1405 2906 158 62 11 chr4 107587608 107588055 -48042065 - RLTR20D LTR ERVK -95 473 2 1 1405 841 123 15 0 chr4 107588055 107588174 -48041946 + B1_Mur4 SINE Alu 30 150 0 1 1405 844 147 7 65 chr4 107588595 107588748 -48041372 - B1_Mur4 SINE Alu -6 144 1 1 1405 230 303 30 0 chr4 107589192 107589258 -48040862 - MTEb LTR MaLR -13 366 299 1 1405 207 100 0 0 chr4 107589630 107589660 -48040460 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1405 854 148 0 23 chr4 107589732 107589863 -48040257 - B3 SINE B2 -86 130 3 1 1405 183 80 0 0 chr4 107589865 107589890 -48040230 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1405 664 182 0 0 chr4 107589891 107590001 -48040119 - PB1D9 SINE Alu -9 111 2 1 1405 607 221 0 9 chr4 107590088 107590202 -48039918 - PB1D7 SINE Alu -2 118 6 1 1405 270 81 0 0 chr4 107590275 107590312 -48039808 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1405 602 214 60 72 chr4 107590368 107590534 -48039586 + RSINE1 SINE B4 2 165 0 1 1405 337 272 161 19 chr4 107590934 107591095 -48039025 + L1MB7 LINE L1 5958 6141 -43 1 1405 463 294 59 35 chr4 107591095 107591264 -48038856 + B4A SINE B4 2 174 -118 1 1405 1192 62 0 0 chr4 107591303 107591447 -48038673 - B1_Mus1 SINE Alu -3 145 2 1 1405 305 191 61 30 chr4 107591448 107591514 -48038606 + MTE2b LTR MaLR 1 68 -351 1 1405 2095 139 15 3 chr4 107591511 107591835 -48038285 + RLTR17 LTR ERVK 276 603 -89 1 1405 330 133 83 0 chr4 107591917 107591977 -48038143 + MTE2b LTR MaLR 67 131 -248 1 1405 307 182 114 25 chr4 107591977 107591991 -48038129 + MT2A LTR ERVL 63 143 -390 1 1405 252 293 61 72 chr4 107592088 107592268 -48037852 + MLT1K LTR MaLR 325 502 -93 1 1405 1136 80 0 0 chr4 107592505 107592643 -48037477 + B1_Mus2 SINE Alu 2 139 -8 1 1405 315 0 0 0 chr4 107592643 107592678 -48037442 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1405 190 308 124 94 chr4 107593346 107593547 -48036573 + L2c LINE L2 2959 3165 -222 1 1405 716 171 8 8 chr4 107593678 107593796 -48036324 - B3A SINE B2 -80 118 1 1 1405 645 229 56 21 chr4 107594295 107594438 -48035682 - B1_Mur2 SINE Alu -1 148 1 1 1405 475 204 63 13 chr4 107595504 107595616 -48034504 + B1_Mur3 SINE Alu 11 120 0 1 1405 415 90 89 11 chr4 107596673 107596763 -48033357 + L1_Mus2 LINE L1 6469 6565 -1 1 1405 540 271 35 7 chr4 107596777 107596918 -48033202 + ID_B1 SINE B4 79 223 -1 1 1405 260 289 46 57 chr4 107597418 107597543 -48032577 + MIRc SINE MIR 22 139 -137 1 1405 824 272 23 36 chr4 107597579 107597865 -48032255 + ID_B1 SINE B4 1 284 -8 1 1405 872 102 35 0 chr4 107598033 107598171 -48031949 + B1_Mur4 SINE Alu 2 150 0 1 1405 487 305 51 49 chr4 107598909 107599281 -48030839 + IAP-d-int LTR ERVK 2725 3286 -3195 2 1405 1320 92 27 5 chr4 107599989 107600175 -48029945 - B2_Mm2 SINE B2 -3 192 3 2 1405 476 342 32 35 chr4 107600875 107601245 -48028875 + RNERVK23-int LTR ERVK 5057 5425 -2792 2 1405 529 126 5 0 chr4 107602025 107602113 -48028007 + B3A SINE B2 5 95 -121 2 1405 774 73 27 9 chr4 107602802 107602912 -48027208 + MT2C_Mm LTR ERVL 364 475 0 2 1405 362 194 30 0 chr4 107602912 107602972 -48027148 - B1_Mur2 SINE Alu -18 131 70 2 1405 869 252 58 27 chr4 107603228 107603452 -48026668 - B4 SINE B4 -4 288 58 2 1405 190 278 35 14 chr4 107603530 107603609 -48026511 + L2a LINE L2 3310 3426 0 2 1405 253 286 54 62 chr4 107603656 107603768 -48026352 - MER5A DNA MER1_type 0 189 79 2 1405 483 298 29 23 chr4 107603792 107603967 -48026153 - RMER15 LTR ERVL -23 552 377 2 1405 482 226 50 43 chr4 107604433 107604572 -48025548 + B1F2 SINE Alu 1 140 -9 2 1405 383 314 10 0 chr4 107604576 107604678 -48025442 + MER5A1 DNA MER1_type 63 165 -1 2 1405 1660 47 0 0 chr4 107604759 107604951 -48025169 + B2_Mm1t SINE B2 1 192 -1 2 1405 1817 104 53 43 chr4 107606183 107606485 -48023635 + ORR1A4 LTR MaLR 25 329 0 2 1405 233 263 17 34 chr4 107606568 107606627 -48023493 - ID4 SINE ID 0 83 26 2 1405 598 235 60 8 chr4 107606639 107606772 -48023348 - B1F1 SINE Alu -8 141 2 2 1405 1587 32 5 5 chr4 107606848 107607035 -48023085 - B2_Mm1a SINE B2 -5 188 2 2 1405 489 264 11 27 chr4 107607118 107607301 -48022819 + CT-rich Low_complexity Low_complexity 1 180 0 2 1405 903 189 137 0 chr4 107607625 107607815 -48022305 - B3 SINE B2 0 216 1 2 1405 596 285 28 16 chr4 107607872 107608054 -48022066 - MIR SINE MIR -27 235 52 2 1405 409 288 67 20 chr4 107608049 107608198 -48021922 + L2a LINE L2 2745 2900 -519 2 1405 801 270 23 32 chr4 107608324 107608344 -48021776 - B3 SINE B2 0 216 197 2 1405 1214 55 0 7 chr4 107608344 107608491 -48021629 - B1_Mus2 SINE Alu 0 147 2 2 1405 801 270 23 32 chr4 107608491 107608528 -48021592 - B3 SINE B2 -20 196 159 2 1405 219 125 0 0 chr4 107608528 107608568 -48021552 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1405 801 270 23 32 chr4 107608568 107608727 -48021393 - B3 SINE B2 -58 158 2 2 1405 200 182 0 0 chr4 107608890 107608923 -48021197 + CT-rich Low_complexity Low_complexity 2 34 0 2 1405 291 28 0 0 chr4 107608953 107608989 -48021131 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1405 233 298 226 9 chr4 107609002 107609232 -48020888 + L2a LINE L2 2972 3251 -175 2 1405 215 312 63 21 chr4 107609246 107609341 -48020779 + L2a LINE L2 3326 3424 -2 2 1405 648 0 0 0 chr4 107609521 107609593 -48020527 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1405 479 194 161 0 chr4 107609593 107609686 -48020434 - ID_B1 SINE B4 -27 197 90 2 1406 320 285 80 46 chr4 107610452 107610603 -48019517 + MIRb SINE MIR 16 171 -37 2 1406 485 242 30 45 chr4 107611383 107611517 -48018603 - MLT2B4 LTR ERVL 0 560 429 2 1406 562 228 40 33 chr4 107611517 107611667 -48018453 - MLT2B4 LTR ERVL -403 153 3 2 1406 244 263 186 50 chr4 107611993 107612133 -48017987 - LTR33 LTR ERVL -18 497 339 2 1406 307 319 106 32 chr4 107612200 107612388 -48017732 - LTR33 LTR ERVL -291 224 23 2 1406 280 261 34 0 chr4 107612561 107612649 -48017471 + CT-rich Low_complexity Low_complexity 2 92 0 2 1406 454 221 23 0 chr4 107612649 107612735 -48017385 - PB1D10 SINE Alu 0 117 30 2 1406 1131 118 21 36 chr4 107613244 107613437 -48016683 - Lx4B LINE L1 -4 7054 6865 2 1406 228 86 0 0 chr4 107613632 107613667 -48016453 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1406 430 287 97 94 chr4 107613670 107613958 -48016162 - B4 SINE B4 -2 290 2 2 1406 557 233 0 49 chr4 107614244 107614332 -48015788 - ID_B1 SINE B4 -10 214 131 2 1406 2031 184 35 57 chr4 107614332 107614757 -48015363 + MTD LTR MaLR 4 419 0 2 1406 557 233 0 49 chr4 107614757 107614790 -48015330 - ID_B1 SINE B4 -94 130 99 2 1406 213 39 0 0 chr4 107615139 107615165 -48014955 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 1406 299 204 150 70 chr4 107615593 107615693 -48014427 - PB1D10 SINE Alu -9 108 1 2 1406 577 249 158 11 chr4 107615873 107616056 -48014064 - B3 SINE B2 -6 210 1 2 1406 809 282 40 35 chr4 107616056 107616284 -48013836 - B4A SINE B4 -62 230 2 2 1406 847 272 127 18 chr4 107616598 107616741 -48013379 - MER89 LTR ERV1 -41 518 362 2 1406 351 0 0 0 chr4 107616741 107616780 -48013340 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1406 450 0 0 0 chr4 107616780 107616829 -48013291 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1406 847 272 127 18 chr4 107616829 107617014 -48013106 - MER89 LTR ERV1 -198 361 156 2 1406 1547 22 27 0 chr4 107617940 107618125 -48011995 - B2_Mm1a SINE B2 -2 191 2 2 1406 2510 153 19 14 chr4 107618132 107618551 -48011569 - MTC LTR MaLR 0 421 1 2 1406 278 311 0 0 chr4 107618701 107618775 -48011345 + ID4 SINE ID 1 74 -9 2 1406 1128 193 38 14 chr4 107618908 107619118 -48011002 + B3 SINE B2 1 215 -1 2 1406 308 264 88 70 chr4 107619249 107619363 -48010757 - PB1D7 SINE Alu 0 120 5 2 1406 200 116 22 44 chr4 107619720 107619765 -48010355 + T-rich Low_complexity Low_complexity 4 47 0 2 1406 905 260 18 9 chr4 107619765 107619986 -48010134 - ID_B1 SINE B4 0 224 2 2 1406 850 157 23 8 chr4 107619990 107620169 -48009951 - B3 SINE B2 -6 189 1 2 1406 791 270 23 19 chr4 107620193 107620408 -48009712 - B3 SINE B2 0 216 1 2 1406 333 0 0 0 chr4 107620638 107620675 -48009445 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1406 252 0 0 0 chr4 107620675 107620702 -48009418 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1406 639 148 65 0 chr4 107621058 107621166 -48008954 - URR1A DNA MER1_type -56 170 56 2 1406 281 182 0 35 chr4 107621301 107621358 -48008762 + B1_Mur4 SINE Alu 2 56 -94 2 1406 292 341 0 0 chr4 107621358 107621440 -48008680 + (CAGAGA)n Simple_repeat Simple_repeat 5 86 0 2 1406 664 152 0 19 chr4 107621441 107621548 -48008572 + B1_Mus2 SINE Alu 43 147 0 2 1406 293 282 14 14 chr4 107621693 107621765 -48008355 - ID4_ SINE ID -11 72 1 2 1406 352 299 109 0 chr4 107621799 107621936 -48008184 + MIR SINE MIR 110 261 -1 2 1406 323 305 122 58 chr4 107622109 107622248 -48007872 - Charlie8 DNA MER1_type -2279 149 2 2 1406 1114 60 0 0 chr4 107623040 107623174 -48006946 + B1_Mus2 SINE Alu 1 134 -13 2 1406 227 31 31 0 chr4 107623174 107623206 -48006914 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1406 259 241 0 0 chr4 107623489 107623543 -48006577 - L1M LINE L1 -2464 5418 5365 2 1406 2625 117 45 3 chr4 107623544 107623922 -48006198 - ORR1B1 LTR MaLR 0 394 1 2 1406 795 133 0 0 chr4 107623934 107624062 -48006058 + (TCC)n Simple_repeat Simple_repeat 2 129 0 2 1406 1322 106 27 0 chr4 107624063 107624251 -48005869 - B2_Mm1a SINE B2 0 193 1 2 1406 962 174 23 91 chr4 107624400 107624621 -48005499 - B3 SINE B2 -6 210 5 2 1406 291 140 20 0 chr4 107624697 107624747 -48005373 + RSINE1 SINE B4 82 132 -33 2 1406 842 166 93 0 chr4 107624897 107625048 -48005072 + ORR1B1 LTR MaLR 31 195 -199 2 1406 409 254 14 84 chr4 107625098 107625308 -48004812 - ORR1D1 LTR MaLR -184 186 1 2 1406 242 286 110 41 chr4 107625187 107625333 -48004787 + B3A SINE B2 38 193 -5 2 1406 23 0 0 0 chr4 107625339 107625362 -48004758 + AT_rich Low_complexity Low_complexity 1 23 0 2 1406 896 197 0 0 chr4 107625362 107625509 -48004611 + B1_Mus2 SINE Alu 1 147 0 2 1406 207 100 0 0 chr4 107625512 107625542 -48004578 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 1406 1053 221 55 5 chr4 107625566 107625766 -48004354 - B3 SINE B2 -6 210 1 2 1406 889 242 26 0 chr4 107625766 107625960 -48004160 - B3 SINE B2 -17 199 1 2 1406 653 107 139 0 chr4 107625960 107626082 -48004038 + RLTR15 LTR ERVK 3 141 -218 2 1406 1786 150 20 47 chr4 107626072 107626549 -48003571 - RMER17C LTR ERVK -519 439 16 2 1406 1252 149 72 0 chr4 107626525 107626747 -48003373 + RLTR15 LTR ERVK 122 359 0 2 1406 335 231 0 27 chr4 107627357 107627439 -48002681 + B1_Mur4 SINE Alu 20 99 -21 2 1406 4986 181 29 13 chr4 107627445 107627657 -48002463 + MYSERV6-int LTR ERVK 3609 3827 -5132 2 1406 297 0 0 0 chr4 107627657 107627690 -48002430 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1406 4986 181 29 13 chr4 107627690 107628299 -48001821 + MYSERV6-int LTR ERVK 3828 4448 -4511 2 1406 1668 203 135 48 chr4 107628299 107628817 -48001303 - RMER2 LTR ERV1 -4 563 1 2 1406 4986 268 69 50 chr4 107628817 107629953 -48000167 + MYSERV6-int LTR ERVK 4224 5381 -1169 2 1406 1577 127 8 0 chr4 107629959 107630195 -47999925 + RLTR15 LTR ERVK 122 359 0 2 1406 767 244 16 75 chr4 107630239 107630425 -47999695 + B3A SINE B2 24 198 0 2 1406 884 135 23 0 chr4 107630447 107630580 -47999540 - B1_Mur4 SINE Alu -1 149 14 2 1406 227 304 22 0 chr4 107630980 107631072 -47999048 + L1M5 LINE L1 5088 5181 -965 2 1406 22 0 0 0 chr4 107631096 107631118 -47999002 + AT_rich Low_complexity Low_complexity 1 22 0 2 1406 282 372 47 19 chr4 107631143 107631502 -47998618 + L1M5 LINE L1 5292 5660 -580 2 1406 525 269 81 15 chr4 107631648 107631659 -47998461 - B1F SINE Alu 0 149 140 2 1406 240 59 0 0 chr4 107631659 107631693 -47998427 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1406 525 269 81 15 chr4 107631693 107631817 -47998303 - B1F SINE Alu -10 139 5 2 1406 252 0 0 0 chr4 107631901 107631929 -47998191 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1406 244 238 121 45 chr4 107632017 107632083 -47998037 - MER47C DNA MER2_type -26 71 1 2 1406 223 269 168 51 chr4 107632156 107632293 -47997827 - MIRb SINE MIR -23 245 93 2 1406 394 172 13 40 chr4 107632362 107632454 -47997666 + PB1D7 SINE Alu 31 126 -1 2 1406 1544 329 94 19 chr4 107632603 107633303 -47996817 + MER45B DNA Tip100 1 753 -287 2 1406 180 0 0 0 chr4 107633327 107633347 -47996773 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1406 625 221 49 0 chr4 107633347 107633469 -47996651 - B1_Mur2 SINE Alu -15 134 7 2 1406 383 239 68 20 chr4 107633531 107633636 -47996484 + PB1D7 SINE Alu 21 126 -22 2 1406 286 285 105 81 chr4 107633645 107633817 -47996303 + MER45B DNA Tip100 863 1038 -2 2 1406 267 209 45 0 chr4 107633821 107633888 -47996232 + MLT1K LTR MaLR 519 588 -7 3 1406 186 263 0 0 chr4 107633943 107633981 -47996139 + MIRb SINE MIR 3 40 -228 3 1406 936 0 0 0 chr4 107633992 107634096 -47996024 + (GAA)n Simple_repeat Simple_repeat 2 105 0 3 1406 1211 163 62 43 chr4 107635530 107635786 -47994334 + MTD LTR MaLR 14 274 -145 3 1406 676 221 52 29 chr4 107635962 107636134 -47993986 + MTD LTR MaLR 244 419 0 3 1406 317 321 132 19 chr4 107636285 107636444 -47993676 - MIRb SINE MIR -31 237 61 3 1406 786 294 18 27 chr4 107636449 107636669 -47993451 - ID_B1 SINE B4 -2 222 5 3 1406 2307 136 50 11 chr4 107636779 107637090 -47993030 - ORR1B1 LTR MaLR 0 394 68 3 1406 2722 42 45 0 chr4 107637090 107637421 -47992699 - ORR1A1 LTR MaLR 0 346 1 3 1406 2307 136 50 11 chr4 107637421 107637488 -47992632 - ORR1B1 LTR MaLR -327 67 1 3 1406 480 316 43 11 chr4 107638483 107638669 -47991451 - MIR SINE MIR -35 227 40 3 1406 1191 43 0 0 chr4 107638695 107638833 -47991287 + B1_Mus1 SINE Alu 1 138 -10 3 1406 341 0 0 43 chr4 107638833 107638879 -47991241 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1406 1671 246 198 16 chr4 107638888 107639368 -47990752 + Lx8 LINE L1 6685 7248 -225 3 1406 423 0 0 0 chr4 107639368 107639415 -47990705 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1406 1671 246 198 16 chr4 107639415 107639555 -47990565 + Lx8 LINE L1 7249 7420 -53 3 1406 1357 215 63 65 chr4 107639555 107639998 -47990122 + RMER10A LTR ERVL 1 442 0 3 1406 1671 246 198 16 chr4 107639998 107640042 -47990078 + Lx8 LINE L1 7421 7470 -3 3 1406 1606 33 0 0 chr4 107640057 107640239 -47989881 + B2_Mm1a SINE B2 2 183 -10 3 1406 597 39 0 0 chr4 107640239 107640316 -47989804 + B2_Mm1a SINE B2 114 190 -3 3 1406 211 368 0 0 chr4 107641366 107641442 -47988678 + MIRb SINE MIR 91 166 -102 3 1406 619 300 172 44 chr4 107642080 107642464 -47987656 - MER31B LTR ERV1 0 466 34 3 1406 197 235 0 0 chr4 107642799 107642833 -47987287 + MIRb SINE MIR 221 254 -14 3 1406 840 274 114 31 chr4 107642873 107643223 -47986897 + MTEb LTR MaLR 1 379 0 3 1406 487 288 23 23 chr4 107643444 107643572 -47986548 - RSINE1 SINE B4 0 165 38 3 1406 22 35 0 0 chr4 107644178 107644207 -47985913 + AT_rich Low_complexity Low_complexity 1 29 0 3 1406 198 0 0 0 chr4 107644239 107644261 -47985859 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1406 465 289 102 0 chr4 107644278 107644406 -47985714 - RSINE1 SINE B4 -24 141 1 3 1406 2281 62 68 16 chr4 107644777 107645088 -47985032 - ORR1A2 LTR MaLR 0 327 1 3 1406 678 242 0 0 chr4 107645391 107645523 -47984597 + B1_Mur1 SINE Alu 9 140 -9 3 1406 694 247 6 60 chr4 107645589 107645757 -47984363 + RSINE1 SINE B4 5 163 -2 3 1406 338 257 29 0 chr4 107645787 107645857 -47984263 + ID4_ SINE ID 8 79 -4 3 1406 242 87 0 21 chr4 107645867 107645914 -47984206 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3 1406 1080 102 0 7 chr4 107645916 107646064 -47984056 - B1_Mus1 SINE Alu -1 147 1 3 1406 1469 191 38 31 chr4 107646065 107646357 -47983763 - MTD LTR MaLR -12 407 114 3 1406 409 226 0 124 chr4 107646397 107646518 -47983602 + MT2B LTR ERVL 159 264 -337 3 1406 1086 38 0 15 chr4 107646421 107646555 -47983565 + B1_Mus1 SINE Alu 17 148 0 3 1406 958 93 185 0 chr4 107646640 107646791 -47983329 + B2_Mm1t SINE B2 1 179 -14 3 1406 341 111 0 36 chr4 107646846 107646913 -47983207 + B2_Mm2 SINE B2 47 109 -107 3 1406 257 107 54 0 chr4 107646902 107646958 -47983162 + B2_Mm2 SINE B2 137 195 0 3 1406 413 331 142 100 chr4 107647026 107647330 -47982790 + HAL1 LINE L1 1206 1534 -973 3 1406 373 286 56 38 chr4 107647330 107647490 -47982630 + RSINE1 SINE B4 3 165 0 3 1406 413 331 142 100 chr4 107647490 107647743 -47982377 + HAL1 LINE L1 1535 1786 -721 3 1406 413 367 11 16 chr4 107647902 107648085 -47982035 + HAL1 LINE L1 1971 2152 -355 3 1406 346 308 122 27 chr4 107648085 107648232 -47981888 + RSINE1 SINE B4 3 163 -2 3 1406 187 306 139 12 chr4 107648388 107648474 -47981646 + MIR3 SINE MIR 58 154 -54 3 1406 691 200 62 41 chr4 107648570 107648716 -47981404 - B1_Mur1 SINE Alu 0 149 1 3 1406 282 301 217 18 chr4 107649934 107650100 -47980020 - MIRb SINE MIR -51 217 19 3 1406 244 191 0 0 chr4 107650705 107650747 -47979373 + L2 LINE L2 1991 2032 -1387 3 1406 243 314 31 69 chr4 107651229 107651359 -47978761 - MLT1A1 LTR MaLR -275 133 9 3 1406 214 285 108 73 chr4 107651584 107651884 -47978236 + L2c LINE L2 3020 3334 -41 3 1406 187 229 102 20 chr4 107652090 107652139 -47977981 + MIR SINE MIR 23 75 -187 3 1406 278 260 52 0 chr4 107652492 107652569 -47977551 - ID4 SINE ID -1 82 2 3 1406 410 0 20 0 chr4 107653119 107653169 -47976951 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1406 460 301 21 7 chr4 107653926 107654070 -47976050 - RSINE1 SINE B4 -17 148 3 3 1406 197 301 55 64 chr4 107654272 107654382 -47975738 + L2b LINE L2 3119 3227 -148 3 1406 300 333 55 79 chr4 107654590 107654792 -47975328 - MLT1E2 LTR MaLR -81 546 350 3 1406 691 268 55 16 chr4 107654830 107655012 -47975108 - ID_B1 SINE B4 -2 222 34 3 1406 1995 157 50 12 chr4 107655158 107655499 -47974621 - ORR1B1 LTR MaLR 0 394 41 3 1406 252 0 0 0 chr4 107656560 107656588 -47973532 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1406 738 153 0 0 chr4 107656727 107656871 -47973249 + (TG)n Simple_repeat Simple_repeat 1 144 0 3 1406 238 306 61 0 chr4 107657035 107657133 -47972987 + MER121 Unknown Unknown 112 215 -197 3 1406 387 0 0 0 chr4 107657156 107657199 -47972921 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1406 321 333 66 8 chr4 107659387 107659508 -47970612 - L3 LINE CR1 -838 3651 3524 3 1406 401 235 25 0 chr4 107659858 107659939 -47970181 - PB1D10 SINE Alu -22 95 13 3 1406 198 333 74 0 chr4 107660909 107661017 -47969103 + MIRb SINE MIR 24 139 -129 3 1406 282 220 229 0 chr4 107661035 107661144 -47968976 + Charlie5 DNA MER1_type 11 144 -2480 3 1406 1039 129 11 0 chr4 107661218 107661396 -47968724 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1406 231 224 0 0 chr4 107661414 107661463 -47968657 - B1_Mur2 SINE Alu 0 149 101 3 1406 232 284 14 29 chr4 107661506 107661575 -47968545 + B1_Mus1 SINE Alu 15 82 -66 3 1406 2765 125 87 87 chr4 107662086 107662343 -47967777 - RMER4B LTR ERVK 0 585 339 3 1406 1508 17 6 0 chr4 107662343 107662522 -47967598 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1406 2765 125 87 87 chr4 107662522 107662806 -47967314 - RMER4B LTR ERVK -247 338 44 3 1406 242 152 43 0 chr4 107662851 107662897 -47967223 - RMER4B LTR ERVK -537 48 1 3 1406 181 314 118 45 chr4 107663265 107663375 -47966745 + L2c LINE L2 3109 3226 -161 3 1406 212 170 19 0 chr4 107663793 107663846 -47966274 + CT-rich Low_complexity Low_complexity 4 57 0 3 1406 2391 169 54 33 chr4 107663925 107664408 -47965712 - RLTR11A LTR ERVK -35 493 1 3 1406 315 0 0 0 chr4 107665347 107665382 -47964738 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1406 232 275 80 27 chr4 107666068 107666180 -47963940 - MIRb SINE MIR -110 158 41 3 1406 300 29 0 0 chr4 107666260 107666295 -47963825 + U2 snRNA snRNA 1 35 -153 3 1406 1936 133 23 7 chr4 107666975 107667277 -47962843 - ORR1B2 LTR MaLR 0 367 61 3 1406 235 150 0 0 chr4 107667961 107668001 -47962119 - MLT1J LTR MaLR 0 549 510 3 1406 928 170 0 0 chr4 107670696 107670837 -47959283 - B1_Mur4 SINE Alu -8 142 2 3 1406 312 261 57 121 chr4 107670963 107671120 -47959000 - MLT1J LTR MaLR -141 371 225 3 1406 325 182 75 64 chr4 107672018 107672112 -47958008 - L1M LINE L1 -733 5391 5297 3 1406 332 296 95 8 chr4 107672119 107672245 -47957875 - L2a LINE L2 0 3426 3290 3 1406 249 176 0 19 chr4 107672500 107672552 -47957568 - ID_B1 SINE B4 0 224 174 3 1406 213 269 43 29 chr4 107672501 107672570 -47957550 - PB1D9 SINE Alu 0 120 51 3 1406 834 62 0 0 chr4 107672809 107672922 -47957198 + B1_Mus1 SINE Alu 36 148 0 3 1406 232 345 149 0 chr4 107673095 107673182 -47956938 + PB1D10 SINE Alu 4 103 -14 3 1406 820 0 20 0 chr4 107673184 107673284 -47956836 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 3 1406 608 281 6 36 chr4 107673285 107673451 -47956669 + RSINE1 SINE B4 5 165 0 3 1406 180 0 0 0 chr4 107673454 107673474 -47956646 + (TAA)n Simple_repeat Simple_repeat 3 22 0 3 1406 326 366 109 31 chr4 107673680 107673973 -47956147 + MER2 DNA MER2_type 7 322 -23 3 1406 198 0 0 0 chr4 107674075 107674097 -47956023 + (TCC)n Simple_repeat Simple_repeat 3 24 0 3 1406 694 136 176 0 chr4 107674108 107674233 -47955887 - B1_Mur4 SINE Alu 0 150 4 3 1406 513 200 139 16 chr4 107674236 107674358 -47955762 + B1_Mur2 SINE Alu 12 148 -1 3 1406 302 333 48 16 chr4 107675109 107675234 -47954886 - MIRm SINE MIR -126 150 22 3 1406 318 318 154 0 chr4 107675329 107675439 -47954681 + ID_B1 SINE B4 9 135 -89 3 1406 405 0 0 0 chr4 107675646 107675691 -47954429 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1406 320 102 33 22 chr4 107677640 107677730 -47952390 + T-rich Low_complexity Low_complexity 1 91 0 3 1406 379 258 158 0 chr4 107677766 107677886 -47952234 - B1F SINE Alu 0 149 11 3 1406 558 0 0 0 chr4 107678199 107678261 -47951859 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 1406 249 310 101 40 chr4 107681376 107681524 -47948596 + MIRb SINE MIR 47 203 -65 3 1406 564 42 0 0 chr4 107681595 107681666 -47948454 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 3 1406 1366 168 18 5 chr4 107683634 107683855 -47946265 + URR1A DNA MER1_type 1 224 -2 3 1406 1627 26 16 0 chr4 107684443 107684632 -47945488 + B2_Mm1t SINE B2 2 193 0 3 1406 210 128 0 0 chr4 107684666 107684705 -47945415 + (TGGGGG)n Simple_repeat Simple_repeat 5 43 0 3 1406 1528 43 0 16 chr4 107685592 107685782 -47944338 - B2_Mm2 SINE B2 -7 188 2 3 1406 204 97 0 0 chr4 107686359 107686390 -47943730 + (TGGGGG)n Simple_repeat Simple_repeat 5 35 0 4 1406 486 0 0 0 chr4 107687985 107688039 -47942081 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1406 215 259 19 0 chr4 107689653 107689707 -47940413 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 4 1406 197 391 0 9 chr4 107689731 107689842 -47940278 + L2 LINE L2 2275 2384 -1035 4 1406 987 141 0 0 chr4 107689940 107690154 -47939966 + (CA)n Simple_repeat Simple_repeat 1 214 0 4 1406 237 159 0 0 chr4 107690347 107690391 -47939729 + CT-rich Low_complexity Low_complexity 2 45 0 4 1406 187 312 47 0 chr4 107692642 107692706 -47937414 - L2b LINE L2 -199 3176 3110 4 1406 216 0 0 0 chr4 107692800 107692824 -47937296 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 4 1406 345 208 42 0 chr4 107696370 107696442 -47933678 - PB1 SINE Alu -7 120 46 4 1406 244 281 16 0 chr4 107696493 107696557 -47933563 + L2c LINE L2 3091 3155 -232 4 1406 227 133 22 0 chr4 107698641 107698686 -47931434 + CT-rich Low_complexity Low_complexity 1 46 0 4 1406 474 232 85 25 chr4 107698699 107698714 -47931406 - ID_B1 SINE B4 -50 242 168 4 1406 710 108 57 16 chr4 107698714 107698837 -47931283 - B1_Mus2 SINE Alu -2 145 18 4 1406 474 232 85 25 chr4 107698837 107698852 -47931268 - ID_B1 SINE B4 -50 167 78 4 1406 181 350 78 35 chr4 107698867 107699009 -47931111 + L2c LINE L2 3225 3372 -3 4 1406 846 149 108 59 chr4 107700320 107700506 -47929614 - URR1A DNA MER1_type -29 197 3 4 1406 200 94 0 30 chr4 107701102 107701135 -47928985 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 4 1406 403 264 124 35 chr4 107701504 107701673 -47928447 + MER33 DNA MER1_type 31 214 -110 4 1406 351 0 0 0 chr4 107702467 107702506 -47927614 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1406 549 250 90 0 chr4 107702521 107702677 -47927443 + B3A SINE B2 1 170 -28 4 1406 588 255 6 48 chr4 107702698 107702863 -47927257 + RSINE1 SINE B4 8 165 0 4 1406 221 167 0 0 chr4 107702864 107702906 -47927214 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 4 1406 24 0 0 0 chr4 107704748 107704772 -47925348 + GC_rich Low_complexity Low_complexity 1 24 0 4 1406 249 242 99 20 chr4 107705490 107705591 -47924529 - MIRb SINE MIR -27 241 133 4 1406 190 280 0 0 chr4 107705973 107706023 -47924097 - MIR SINE MIR 0 262 213 4 1406 243 0 0 0 chr4 107706469 107706496 -47923624 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1406 333 224 61 11 chr4 107706576 107706671 -47923449 + B1F SINE Alu 14 113 -7 4 1406 473 287 35 58 chr4 107706681 107706855 -47923265 + B4A SINE B4 1 170 -122 4 1406 312 281 12 24 chr4 107707348 107707432 -47922688 - ID SINE ID -140 84 2 4 1406 714 246 73 42 chr4 107707592 107707783 -47922337 + B4A SINE B4 1 197 -95 4 1406 1001 264 43 74 chr4 107707802 107708021 -47922099 + B4A SINE B4 3 229 -63 4 1406 1074 88 0 45 chr4 107708021 107708158 -47921962 + B1_Mus1 SINE Alu 1 137 -11 4 1406 195 42 0 0 chr4 107708158 107708182 -47921938 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1406 1074 88 0 45 chr4 107708182 107708199 -47921921 + B1_Mus1 SINE Alu 138 148 0 4 1406 1001 264 43 74 chr4 107708199 107708278 -47921842 + B4A SINE B4 230 292 0 4 1406 1585 53 5 0 chr4 107708706 107708896 -47921224 - B2_Mm1t SINE B2 -1 192 2 4 1406 732 186 54 103 chr4 107708951 107709003 -47921117 - B2_Mm2 SINE B2 0 195 136 4 1406 342 45 0 0 chr4 107709003 107709047 -47921073 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1406 840 154 8 16 chr4 107709047 107709198 -47920922 - B3 SINE B2 -60 135 2 4 1406 529 266 106 39 chr4 107709563 107709743 -47920377 - B3A SINE B2 -5 193 2 4 1406 863 176 0 0 chr4 107710317 107710453 -47919667 + B1_Mur1 SINE Alu 1 136 -13 4 1406 887 260 5 15 chr4 107710465 107710664 -47919456 + B3A SINE B2 1 197 -1 4 1406 579 29 0 0 chr4 107710804 107710873 -47919247 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1406 307 275 176 0 chr4 107711008 107711099 -47919021 - B3A SINE B2 -71 127 21 4 1406 898 176 124 16 chr4 107711123 107711308 -47918812 - B3 SINE B2 -11 205 1 4 1406 551 253 101 22 chr4 107711322 107711500 -47918620 - B3A SINE B2 0 198 7 4 1406 791 136 64 0 chr4 107711757 107711882 -47918238 + B1_Mur3 SINE Alu 1 133 -16 4 1406 393 223 26 103 chr4 107711937 107712092 -47918028 + ID_B1 SINE B4 81 223 -1 4 1406 566 256 0 0 chr4 107712152 107712269 -47917851 + B3A SINE B2 1 117 -81 4 1406 230 179 11 45 chr4 107712476 107712564 -47917556 + CT-rich Low_complexity Low_complexity 5 89 0 4 1406 633 214 23 0 chr4 107712931 107713104 -47917016 + CT-rich Low_complexity Low_complexity 4 180 0 4 1406 234 318 36 45 chr4 107713451 107713563 -47916557 + L2 LINE L2 1940 2050 -1369 4 1406 197 346 89 41 chr4 107713655 107713824 -47916296 + L2 LINE L2 2281 2457 -962 4 1406 550 183 29 0 chr4 107714301 107714405 -47915715 - U6 snRNA snRNA 0 107 1 4 1406 309 300 79 10 chr4 107715580 107715656 -47914464 + B1F2 SINE Alu 3 85 -64 4 1406 3063 46 2 2 chr4 107715656 107716052 -47914068 + MTA_Mm LTR MaLR 1 396 0 4 1406 264 218 18 0 chr4 107716052 107716107 -47914013 + ID_B1 SINE B4 160 215 -9 4 1406 740 47 0 58 chr4 107719721 107719858 -47910262 + (GGGAGA)n Simple_repeat Simple_repeat 2 130 0 4 1406 908 243 68 0 chr4 107719861 107720067 -47910053 - B4A SINE B4 -65 227 8 4 1406 437 290 161 42 chr4 107720694 107721228 -47908892 + MLT1F2 LTR MaLR 1 580 -74 4 1406 386 306 13 45 chr4 107721245 107721399 -47908721 - MER58B DNA MER1_type -2 339 191 4 1406 243 0 0 0 chr4 107721422 107721449 -47908671 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1406 310 180 0 0 chr4 107721504 107721554 -47908566 - RSINE1 SINE B4 -110 55 6 4 1406 471 260 178 47 chr4 107721674 107721932 -47908188 + B4A SINE B4 1 292 0 4 1406 482 257 14 14 chr4 107721973 107722111 -47908009 + B3A SINE B2 60 197 -1 4 1406 822 141 14 22 chr4 107722151 107722289 -47907831 + B1_Mur3 SINE Alu 7 143 -6 4 1406 432 0 0 0 chr4 107722296 107722344 -47907776 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1406 385 218 119 0 chr4 107722363 107722464 -47907656 + PB1D9 SINE Alu 3 115 -5 4 1406 227 167 0 0 chr4 107722839 107722882 -47907238 - MIRc SINE MIR -151 125 83 4 1406 200 270 16 0 chr4 107722983 107723046 -47907074 - MIRb SINE MIR -186 82 19 4 1406 583 215 37 30 chr4 107723755 107723889 -47906231 + B1_Mur1 SINE Alu 15 149 0 4 1406 195 129 0 0 chr4 107723889 107723920 -47906200 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1406 476 111 0 0 chr4 107724846 107724918 -47905202 + B1_Mur4 SINE Alu 62 133 -17 4 1406 669 246 78 26 chr4 107724989 107725181 -47904939 - B3 SINE B2 -12 204 3 4 1406 230 308 251 6 chr4 107725338 107725701 -47904419 - L2a LINE L2 -25 3401 2950 4 1406 276 256 82 82 chr4 107725883 107726066 -47904054 - L2a LINE L2 -789 2630 2448 4 1406 231 359 102 8 chr4 107726088 107726206 -47903914 + MLT1A1 LTR MaLR 1 129 -279 4 1406 232 324 168 0 chr4 107726489 107726674 -47903446 - L2a LINE L2 -1041 2378 2163 4 1406 224 340 75 19 chr4 107726699 107726858 -47903262 - L2a LINE L2 -1369 2050 1883 4 1406 1708 186 40 98 chr4 107726969 107727173 -47902947 + MTC LTR MaLR 1 206 -215 4 1406 3318 65 2 0 chr4 107727173 107727587 -47902533 + L1_Mus1 LINE L1 6153 6567 0 4 1406 1708 186 40 98 chr4 107727587 107727829 -47902291 + MTC LTR MaLR 207 421 0 4 1406 233 287 50 69 chr4 107727829 107727930 -47902190 - MIRc SINE MIR -147 121 23 4 1406 805 206 126 31 chr4 107729029 107729220 -47900900 + B3 SINE B2 2 210 -6 4 1406 221 54 0 75 chr4 107729226 107729244 -47900876 + (A)n Simple_repeat Simple_repeat 1 16 0 4 1406 1224 61 0 0 chr4 107729244 107729391 -47900729 + B1_Mm SINE Alu 1 147 0 4 1406 221 54 0 75 chr4 107729391 107729412 -47900708 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1406 553 217 23 15 chr4 107729602 107729733 -47900387 + B1_Mur2 SINE Alu 2 133 -16 4 1406 280 197 27 27 chr4 107729787 107729860 -47900260 + B1F SINE Alu 69 141 -8 4 1406 360 194 15 15 chr4 107729877 107729945 -47900175 - ID_B1 SINE B4 -76 148 81 4 1406 416 305 8 25 chr4 107729998 107730119 -47900001 - PB1D7 SINE Alu 0 120 2 4 1406 330 132 0 0 chr4 107730510 107730563 -47899557 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1406 629 296 116 37 chr4 107730586 107730673 -47899447 - L1MB5 LINE L1 -7 6167 6088 4 1406 1236 222 78 31 chr4 107730673 107731031 -47899089 + MTEb LTR MaLR 3 377 -2 4 1406 629 296 116 37 chr4 107731031 107731322 -47898798 - L1MB5 LINE L1 -87 6087 5759 4 1406 512 281 59 47 chr4 107731404 107731445 -47898675 - B4A SINE B4 -27 265 231 4 1406 261 0 0 0 chr4 107731445 107731474 -47898646 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 4 1406 999 103 0 0 chr4 107731474 107731610 -47898510 - B1_Mur3 SINE Alu -13 136 1 4 1406 512 281 59 47 chr4 107731610 107731821 -47898299 - B4A SINE B4 -62 230 10 4 1406 489 268 97 17 chr4 107731862 107732074 -47898046 - L1MB5 LINE L1 -487 5677 5450 4 1406 927 179 156 11 chr4 107733923 107734109 -47896011 + B3 SINE B2 4 216 0 4 1406 297 205 90 0 chr4 107734121 107734182 -47895938 + B3 SINE B2 27 90 -126 4 1406 405 0 0 0 chr4 107734182 107734227 -47895893 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1406 297 205 90 0 chr4 107734227 107734243 -47895877 + B3 SINE B2 91 110 -106 4 1406 1194 117 47 0 chr4 107734311 107734482 -47895638 + B2_Mm2 SINE B2 3 181 -14 4 1406 305 157 164 45 chr4 107734528 107734639 -47895481 + B2_Mm2 SINE B2 47 185 -8 4 1406 597 231 66 36 chr4 107734969 107735135 -47894985 - B3 SINE B2 -37 179 9 4 1406 368 273 76 0 chr4 107735275 107735407 -47894713 + ID_B1 SINE B4 83 224 0 4 1406 1081 50 58 0 chr4 107735951 107736090 -47894030 - B1_Mm SINE Alu 0 147 1 4 1406 968 129 13 26 chr4 107736123 107736274 -47893846 + B1_Mur4 SINE Alu 2 150 0 4 1406 423 56 0 0 chr4 107737329 107737383 -47892737 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1406 288 0 0 0 chr4 107737389 107737421 -47892699 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1406 200 364 125 0 chr4 107737464 107737552 -47892568 - L2 LINE L2 -591 2828 2730 4 1406 1792 90 16 0 chr4 107737562 107737807 -47892313 + L1_Mus1 LINE L1 6319 6567 0 4 1406 1095 44 69 0 chr4 107738495 107738654 -47891466 + B2_Mm2 SINE B2 25 194 -1 5 1406 496 171 80 9 chr4 107738675 107738787 -47891333 + ID_B1 SINE B4 104 223 -1 5 1406 646 212 13 25 chr4 107738923 107739115 -47891005 + B3 SINE B2 1 191 -4 5 1406 527 219 0 9 chr4 107739118 107739224 -47890896 + PB1D9 SINE Alu 2 106 -14 5 1406 373 122 27 0 chr4 107739228 107739302 -47890818 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 5 1406 313 226 128 0 chr4 107740230 107740332 -47889788 + PB1D10 SINE Alu 3 117 0 5 1406 299 256 151 64 chr4 107740354 107740589 -47889531 + L1MB8 LINE L1 5271 5534 -646 5 1406 442 243 28 0 chr4 107740607 107740714 -47889406 + L1MB8 LINE L1 5856 5965 -213 5 1407 234 0 0 0 chr4 107741364 107741390 -47888730 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 1407 406 271 91 34 chr4 107741543 107741719 -47888401 + L1MC4 LINE L1 6698 6883 -1159 5 1407 230 226 109 31 chr4 107741719 107741783 -47888337 + B3A SINE B2 51 119 -79 5 1407 483 281 82 31 chr4 107741856 107742113 -47888007 + L1MC4 LINE L1 6859 7128 -914 5 1407 361 257 54 75 chr4 107742233 107742263 -47887857 + B4 SINE B4 72 215 -77 5 1407 664 120 68 0 chr4 107742263 107742380 -47887740 + B1_Mur2 SINE Alu 14 138 -11 5 1407 183 42 0 0 chr4 107743761 107743785 -47886335 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1407 719 163 29 7 chr4 107744263 107744399 -47885721 + B1_Mur4 SINE Alu 11 149 -1 5 1407 1099 271 168 37 chr4 107744529 107745016 -47885104 + Lx9 LINE L1 6205 6755 -889 5 1407 709 141 33 8 chr4 107745039 107745161 -47884959 - B1_Mur3 SINE Alu -24 125 1 5 1407 822 126 16 0 chr4 107745236 107745363 -47884757 + B1_Mus2 SINE Alu 18 146 -1 5 1407 21 82 0 0 chr4 107745544 107745593 -47884527 + AT_rich Low_complexity Low_complexity 1 49 0 5 1407 474 299 48 18 chr4 107745864 107745911 -47884209 - B4 SINE B4 -35 257 86 5 1407 678 162 0 25 chr4 107745911 107746031 -47884089 - B1_Mur3 SINE Alu -32 117 1 5 1407 462 272 8 26 chr4 107746590 107746707 -47883413 + B1F SINE Alu 1 115 -34 5 1407 426 248 52 44 chr4 107746597 107746732 -47883388 + ID_B1 SINE B4 89 224 0 5 1407 323 296 134 47 chr4 107746736 107746885 -47883235 + RSINE1 SINE B4 4 165 0 5 1407 183 42 0 0 chr4 107746885 107746909 -47883211 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1407 28 0 0 0 chr4 107747461 107747489 -47882631 + AT_rich Low_complexity Low_complexity 1 28 0 5 1407 620 221 92 0 chr4 107747496 107747627 -47882493 + B1_Mus1 SINE Alu 6 148 0 5 1407 1094 70 0 43 chr4 107747629 107747792 -47882328 + B2_Mm2 SINE B2 1 156 -39 5 1407 408 40 0 0 chr4 107747797 107747847 -47882273 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1407 609 49 0 0 chr4 107747847 107747928 -47882192 + (CAAGA)n Simple_repeat Simple_repeat 3 83 0 5 1407 1275 104 11 16 chr4 107748064 107748249 -47881871 + B2_Mm1t SINE B2 2 185 -8 5 1407 290 26 26 0 chr4 107748309 107748348 -47881772 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 5 1407 201 74 0 0 chr4 107748346 107748373 -47881747 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 5 1407 1154 107 6 0 chr4 107748382 107748559 -47881561 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 5 1407 538 153 99 78 chr4 107748566 107748708 -47881412 + B1_Mur1 SINE Alu 1 145 -4 5 1407 471 287 88 62 chr4 107749434 107749627 -47880493 + B3A SINE B2 1 198 0 5 1407 192 276 87 128 chr4 107749682 107749768 -47880352 - L2 LINE L2 -922 2497 2413 5 1407 420 37 0 0 chr4 107749768 107749822 -47880298 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1407 192 276 87 128 chr4 107749822 107749930 -47880190 - L2 LINE L2 -1007 2412 2311 5 1407 1337 257 39 35 chr4 107749998 107750149 -47879971 + RLTR20A1 LTR ERVK 49 197 -354 5 1407 2192 100 261 12 chr4 107750149 107750575 -47879545 + RLTR47_MM LTR ERV1 1 532 0 5 1407 1337 257 39 35 chr4 107750575 107750911 -47879209 + RLTR20A1 LTR ERVK 198 538 -13 5 1407 474 18 0 0 chr4 107751193 107751248 -47878872 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1407 438 208 47 0 chr4 107751248 107751354 -47878766 - PB1D10 SINE Alu -1 116 6 5 1407 483 302 46 89 chr4 107751357 107751637 -47878483 + L1MEf LINE L1 284 553 -5647 5 1407 2742 62 145 142 chr4 107751637 107752146 -47877974 + RLTR1B LTR ERV1 1 511 -1 5 1407 483 302 46 89 chr4 107752146 107752167 -47877953 + L1MEf LINE L1 554 572 -5628 5 1407 538 272 147 31 chr4 107752171 107752240 -47877880 + B4A SINE B4 10 110 -182 5 1407 363 23 0 0 chr4 107752240 107752284 -47877836 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1407 538 272 147 31 chr4 107752284 107752438 -47877682 + B4A SINE B4 111 258 -34 5 1407 325 247 26 13 chr4 107752897 107752975 -47877145 - ID4_ SINE ID -2 81 3 5 1407 1053 65 0 0 chr4 107753011 107753149 -47876971 + (GGGGA)n Simple_repeat Simple_repeat 5 142 0 5 1407 249 184 167 95 chr4 107753168 107753230 -47876890 + PB1D10 SINE Alu 28 103 -14 5 1407 933 93 13 7 chr4 107753230 107753382 -47876738 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 5 1407 249 184 167 95 chr4 107753382 107753403 -47876717 + PB1D10 SINE Alu 104 117 0 5 1407 810 153 30 0 chr4 107753481 107753612 -47876508 + B1_Mus1 SINE Alu 2 136 -12 5 1407 218 192 12 99 chr4 107753953 107754034 -47876086 + A-rich Low_complexity Low_complexity 5 78 0 5 1407 712 169 51 7 chr4 107754079 107754216 -47875904 + B1_Mur2 SINE Alu 2 144 -5 5 1407 1602 204 71 56 chr4 107754228 107754606 -47875514 + Lx6 LINE L1 6901 7284 -176 5 1407 880 200 27 0 chr4 107754623 107754808 -47875312 + B3 SINE B2 27 216 0 5 1407 305 247 25 0 chr4 107755019 107755100 -47875020 + B4 SINE B4 2 84 -208 5 1407 468 0 0 0 chr4 107755218 107755270 -47874850 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1407 180 0 0 0 chr4 107755270 107755289 -47874831 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1407 423 38 0 0 chr4 107755339 107755392 -47874728 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1407 418 256 156 4 chr4 107755468 107755711 -47874409 + L1MEf LINE L1 1611 1890 -4310 5 1407 585 243 93 28 chr4 107755730 107755912 -47874208 + MER20 DNA MER1_type 1 194 -25 5 1407 404 193 22 33 chr4 107756001 107756092 -47874028 + ID_B1 SINE B4 104 193 -31 5 1407 230 257 40 13 chr4 107756098 107756173 -47873947 + RSINE1 SINE B4 2 78 -87 5 1407 291 284 42 25 chr4 107756255 107756374 -47873746 + RSINE1 SINE B4 43 163 -2 5 1407 222 125 41 20 chr4 107756638 107756687 -47873433 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1407 718 286 0 11 chr4 107756760 107756944 -47873176 + B3A SINE B2 1 182 -16 5 1407 393 298 41 12 chr4 107756989 107757159 -47872961 + L1M5 LINE L1 5353 5527 -652 5 1407 1341 89 15 45 chr4 107757508 107757708 -47872412 + B2_Mm2 SINE B2 2 195 0 5 1407 27 29 0 0 chr4 107758030 107758064 -47872056 + AT_rich Low_complexity Low_complexity 1 34 0 5 1407 628 240 8 0 chr4 107758619 107758748 -47871372 - ID_B1 SINE B4 -9 215 86 5 1407 249 305 0 0 chr4 107758890 107758972 -47871148 - MLT1A1 LTR MaLR -282 126 45 5 1407 694 177 15 0 chr4 107759169 107759299 -47870821 + B1_Mus2 SINE Alu 14 145 -2 5 1407 261 296 116 36 chr4 107759349 107759461 -47870659 - ID_B1 SINE B4 -22 202 82 5 1407 2700 147 79 26 chr4 107760102 107760682 -47869438 + RLTR22_Mur LTR ERVK 51 661 -1187 5 1407 180 0 0 0 chr4 107760682 107760702 -47869418 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1407 858 58 0 0 chr4 107760702 107760822 -47869298 - B1_Mm SINE Alu 0 147 28 5 1407 8198 123 46 17 chr4 107760823 107761633 -47868487 - L1_Mm LINE L1 -648 5229 4175 5 1407 1261 77 38 11 chr4 107761633 107761816 -47868304 - B2_Mm2 SINE B2 -7 188 1 5 1407 8198 121 1 17 chr4 107761816 107762481 -47867639 - L1_Mm LINE L1 -1704 4179 3523 5 1407 3530 136 10 5 chr4 107762481 107763082 -47867038 + RLTR22_Mur LTR ERVK 1243 1846 -2 5 1407 706 81 0 0 chr4 107763960 107764059 -47866061 + B1_Mus2 SINE Alu 49 147 0 5 1407 408 67 0 0 chr4 107764071 107764131 -47865989 + (CAA)n Simple_repeat Simple_repeat 1 60 0 5 1407 296 100 0 91 chr4 107764134 107764200 -47865920 + B1_Mur4 SINE Alu 91 150 0 5 1407 189 107 0 0 chr4 107764210 107764238 -47865882 + (GGA)n Simple_repeat Simple_repeat 2 29 0 5 1407 234 0 0 0 chr4 107764673 107764699 -47865421 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1407 1108 78 0 0 chr4 107764699 107764840 -47865280 - B1_Mus2 SINE Alu -6 141 1 5 1407 328 272 0 0 chr4 107764850 107764931 -47865189 - ID4_ SINE ID -2 81 1 5 1407 348 301 15 11 chr4 107764983 107765104 -47865016 + B1F SINE Alu 1 119 -1 5 1407 217 200 0 0 chr4 107765112 107765147 -47864973 + G-rich Low_complexity Low_complexity 1 35 0 5 1407 318 51 85 0 chr4 107765149 107765208 -47864912 + (GGGAGA)n Simple_repeat Simple_repeat 3 66 0 5 1407 743 207 0 14 chr4 107766005 107766147 -47863973 - B1_Mur1 SINE Alu -8 141 2 5 1407 447 255 27 9 chr4 107766256 107766367 -47863753 + PB1D10 SINE Alu 5 117 0 5 1407 533 233 45 30 chr4 107766386 107766519 -47863601 + B1_Mus1 SINE Alu 13 147 -1 5 1407 1248 28 14 0 chr4 107766680 107766825 -47863295 + B1_Mm SINE Alu 1 147 0 5 1407 750 101 0 0 chr4 107766830 107766939 -47863181 + (GA)n Simple_repeat Simple_repeat 2 110 0 5 1407 254 83 0 0 chr4 107767012 107767048 -47863072 - U2 snRNA snRNA -152 36 1 5 1407 267 279 101 0 chr4 107767091 107767170 -47862950 + ID_B1 SINE B4 85 171 -53 5 1407 480 279 28 21 chr4 107767328 107767471 -47862649 + B1_Mur2 SINE Alu 6 149 0 5 1407 226 293 103 32 chr4 107767579 107767734 -47862386 + L1MC4 LINE L1 21 186 -6029 5 1407 212 311 40 0 chr4 107768016 107768090 -47862030 - B4A SINE B4 -214 78 2 5 1407 595 231 131 0 chr4 107768285 107768445 -47861675 + ID_B1 SINE B4 3 183 -41 5 1407 250 290 16 0 chr4 107768459 107768521 -47861599 + GA-rich Low_complexity Low_complexity 1 63 0 5 1407 219 0 0 0 chr4 107769610 107769640 -47860480 - B3A SINE B2 -168 30 1 5 1407 235 222 79 0 chr4 107769640 107769699 -47860421 + MLT1A0 LTR MaLR 28 91 -274 5 1407 749 196 111 20 chr4 107769722 107769920 -47860200 + B3 SINE B2 1 216 0 6 1407 537 242 98 8 chr4 107770041 107770174 -47859946 - B1_Mur1 SINE Alu -2 147 3 6 1407 1086 174 55 23 chr4 107770184 107770402 -47859718 - URR1A DNA MER1_type -1 225 1 6 1407 1430 60 33 0 chr4 107770422 107770604 -47859516 - B2_Mm2 SINE B2 -6 189 2 6 1407 419 264 0 0 chr4 107770933 107771020 -47859100 + ID_B1 SINE B4 109 195 -29 6 1407 236 209 0 0 chr4 107771050 107771093 -47859027 + MLT1A0 LTR MaLR 108 150 -215 5 1407 230 0 33 0 chr4 107771135 107771165 -47858955 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1407 1912 193 91 24 chr4 107771169 107771663 -47858457 + RLTR11A2 LTR ERVK 1 527 0 6 1407 535 171 108 0 chr4 107771704 107771815 -47858305 - B1_Mur2 SINE Alu 0 149 27 6 1407 336 320 92 20 chr4 107771842 107771995 -47858125 + RSINE1 SINE B4 2 165 0 6 1407 552 171 268 13 chr4 107772035 107772200 -47857920 - B3 SINE B2 -2 214 8 6 1407 216 0 0 0 chr4 107772239 107772263 -47857857 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1407 1461 49 32 11 chr4 107772441 107772628 -47857492 + B2_Mm2 SINE B2 1 191 -4 6 1407 519 229 18 0 chr4 107772777 107772886 -47857234 + RSINE1 SINE B4 46 156 -9 6 1407 378 0 0 0 chr4 107772909 107772951 -47857169 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1407 443 158 147 0 chr4 107773290 107773385 -47856735 + RSINE1 SINE B4 2 110 -55 6 1407 506 120 139 10 chr4 107773552 107773653 -47856467 - B1_Mur4 SINE Alu 0 150 37 6 1407 673 248 50 23 chr4 107773652 107773871 -47856249 - Charlie5 DNA MER1_type -186 2438 2214 6 1407 234 48 119 0 chr4 107773866 107773908 -47856212 - Charlie5 DNA MER1_type -2515 109 63 6 1407 474 237 114 0 chr4 107774011 107774125 -47855995 - RSINE1 SINE B4 -1 164 38 6 1407 449 237 0 0 chr4 107774361 107774458 -47855662 + ID_B1 SINE B4 127 223 -1 6 1407 461 282 127 17 chr4 107774470 107774611 -47855509 + B3A SINE B2 2 160 -38 6 1407 449 34 0 17 chr4 107774611 107774671 -47855449 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1407 461 282 127 17 chr4 107774671 107774702 -47855418 + B3A SINE B2 161 193 -5 6 1407 23 33 0 0 chr4 107774961 107774991 -47855129 + AT_rich Low_complexity Low_complexity 1 30 0 6 1407 51 17 0 0 chr4 107775010 107775068 -47855052 + AT_rich Low_complexity Low_complexity 1 58 0 6 1407 1142 103 86 0 chr4 107775236 107775411 -47854709 + B2_Mm1t SINE B2 1 190 -3 6 1407 706 75 9 9 chr4 107775416 107775523 -47854597 + (GAGAA)n Simple_repeat Simple_repeat 3 109 0 6 1407 930 110 0 0 chr4 107775632 107775778 -47854342 + (GGGA)n Simple_repeat Simple_repeat 1 146 0 6 1407 538 250 75 38 chr4 107775994 107776206 -47853914 + L1MB7 LINE L1 5639 5858 -326 6 1407 1228 54 0 0 chr4 107776209 107776356 -47853764 + B1_Mm SINE Alu 1 147 0 6 1407 1066 70 35 0 chr4 107776400 107776543 -47853577 + B1_Mus1 SINE Alu 1 148 0 6 1407 307 266 0 21 chr4 107776841 107776935 -47853185 + ID4 SINE ID 1 92 -60 6 1407 636 275 0 0 chr4 107777056 107777194 -47852926 + RSINE1 SINE B4 3 140 -25 6 1407 789 144 0 0 chr4 107777208 107777340 -47852780 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 6 1407 879 162 120 0 chr4 107777434 107777601 -47852519 + B3 SINE B2 11 197 -19 6 1407 738 154 25 6 chr4 107778000 107778157 -47851963 + CT-rich Low_complexity Low_complexity 2 161 0 6 1407 500 241 37 0 chr4 107778157 107778265 -47851855 - PB1D7 SINE Alu 0 120 9 6 1407 234 333 26 13 chr4 107778574 107778650 -47851470 + FLAM_A SINE Alu 2 78 -217 6 1407 650 278 24 12 chr4 107778703 107778867 -47851253 + ID_B1 SINE B4 1 166 -58 6 1407 1254 82 53 0 chr4 107778909 107779079 -47851041 + B2_Mm1t SINE B2 1 179 -14 6 1407 392 112 0 11 chr4 107779111 107779225 -47850895 + B2_Mm2 SINE B2 47 195 0 6 1407 214 300 0 0 chr4 107779602 107779652 -47850468 + ID4 SINE ID 24 73 -10 6 1407 589 128 16 23 chr4 107779704 107779832 -47850288 + CT-rich Low_complexity Low_complexity 1 127 0 6 1407 822 143 15 22 chr4 107779843 107779979 -47850141 - B1_Mur2 SINE Alu -1 148 14 6 1407 243 226 105 23 chr4 107780514 107780600 -47849520 - ID_B1 SINE B4 -131 93 1 6 1407 291 302 81 32 chr4 107780665 107780788 -47849332 - ID_B1 SINE B4 -8 216 88 6 1407 473 248 18 27 chr4 107780682 107780794 -47849326 - B1F1 SINE Alu -38 111 1 6 1407 718 170 72 22 chr4 107780913 107781051 -47849069 + B1_Mur4 SINE Alu 5 149 -1 6 1407 626 333 22 6 chr4 107781146 107781324 -47848796 + ID_B1 SINE B4 24 204 -20 6 1407 1671 16 5 10 chr4 107781407 107781600 -47848520 + B2_Mm1a SINE B2 2 193 0 6 1407 1234 51 25 0 chr4 107781766 107781923 -47848197 + B2_Mm2 SINE B2 2 162 -33 6 1407 189 0 0 0 chr4 107781923 107781944 -47848176 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 6 1407 390 271 47 82 chr4 107782638 107782895 -47847225 + RLTR13D3 LTR ERVK 825 1072 -42 6 1407 743 194 0 14 chr4 107783644 107783790 -47846330 + B1_Mur4 SINE Alu 6 149 -1 6 1407 252 297 37 99 chr4 107783656 107783817 -47846303 + B4A SINE B4 101 251 -41 6 1407 1628 176 98 23 chr4 107783828 107784176 -47845944 + ORR1D1 LTR MaLR 1 374 0 6 1407 1327 186 149 40 chr4 107784214 107784584 -47845536 - MTD LTR MaLR 0 419 10 6 1407 210 331 106 15 chr4 107785032 107785164 -47844956 + B1F1 SINE Alu 1 144 -5 6 1407 427 267 60 8 chr4 107785125 107785242 -47844878 + RSINE1 SINE B4 8 130 -35 6 1407 488 167 0 8 chr4 107785272 107785393 -47844727 + CT-rich Low_complexity Low_complexity 2 121 0 6 1407 381 116 0 0 chr4 107785393 107785462 -47844658 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1407 336 281 63 47 chr4 107785627 107785754 -47844366 - RSINE1 SINE B4 -35 130 2 6 1407 699 190 9 37 chr4 107785966 107786117 -47844003 + B1_Mur1 SINE Alu 2 150 0 6 1407 442 276 9 0 chr4 107786189 107786294 -47843826 - Charlie1a DNA MER1_type -443 1012 907 6 1407 21 0 0 0 chr4 107786373 107786394 -47843726 + AT_rich Low_complexity Low_complexity 1 21 0 6 1407 35 0 0 0 chr4 107786422 107786457 -47843663 + AT_rich Low_complexity Low_complexity 1 35 0 6 1407 978 135 7 20 chr4 107786465 107786616 -47843504 + B1_Mur3 SINE Alu 1 149 0 6 1407 216 225 0 0 chr4 107786951 107786991 -47843129 + B4 SINE B4 2 41 -251 6 1407 454 129 0 23 chr4 107787092 107787179 -47842941 + G-rich Low_complexity Low_complexity 4 88 0 6 1407 366 220 21 42 chr4 107787180 107787275 -47842845 + B4 SINE B4 200 292 0 6 1407 791 246 62 19 chr4 107787473 107787684 -47842436 + ID_B1 SINE B4 5 224 0 6 1407 219 36 0 0 chr4 107787847 107787875 -47842245 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 1407 245 298 30 60 chr4 107787878 107787978 -47842142 - B1F SINE Alu -7 142 46 6 1407 215 303 54 43 chr4 107787937 107788030 -47842090 + BC1_Mm scRNA scRNA 5 98 -54 6 1407 385 302 36 54 chr4 107788036 107788204 -47841916 + RSINE1 SINE B4 1 165 0 6 1407 673 85 57 0 chr4 107788205 107788346 -47841774 + (CA)n Simple_repeat Simple_repeat 2 150 0 6 1407 898 122 0 0 chr4 107788874 107788997 -47841123 + B1_Mur4 SINE Alu 22 144 -6 6 1407 63 36 0 0 chr4 107788997 107789081 -47841039 + AT_rich Low_complexity Low_complexity 1 84 0 6 1407 899 280 9 9 chr4 107789215 107789428 -47840692 - ID_B1 SINE B4 -10 214 2 6 1407 211 304 42 42 chr4 107789740 107789812 -47840308 + B1F1 SINE Alu 73 144 -5 6 1407 546 112 12 0 chr4 107790252 107790332 -47839788 + B2_Mm1t SINE B2 2 82 -111 6 1407 276 296 153 0 chr4 107790372 107790470 -47839650 - PB1D7 SINE Alu -6 114 2 6 1407 1497 47 5 68 chr4 107790585 107790791 -47839329 + B2_Mm1a SINE B2 1 193 0 6 1407 320 213 0 0 chr4 107791528 107791589 -47838531 + B1_Mur3 SINE Alu 5 65 -84 6 1407 637 168 98 86 chr4 107791574 107791737 -47838383 + RLTR14 LTR ERV1 74 238 -144 6 1407 1086 131 15 25 chr4 107791815 107791960 -47838160 + B2_Mm2 SINE B2 2 147 -48 6 1407 243 0 0 0 chr4 107791960 107791987 -47838133 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1407 1086 131 15 25 chr4 107791987 107792037 -47838083 + B2_Mm2 SINE B2 148 195 0 6 1407 881 69 333 0 chr4 107792105 107792249 -47837871 + B2_Mm1t SINE B2 2 193 0 6 1407 286 181 25 72 chr4 107792263 107792361 -47837759 + PB1D7 SINE Alu 68 120 0 6 1407 180 0 0 0 chr4 107792361 107792381 -47837739 + (GAA)n Simple_repeat Simple_repeat 3 22 0 6 1407 235 228 17 34 chr4 107792398 107792457 -47837663 - RLTR25A LTR ERVK -524 579 522 6 1407 646 143 0 0 chr4 107792404 107792502 -47837618 - B1_Mus1 SINE Alu -49 99 2 6 1407 661 189 0 39 chr4 107792739 107792866 -47837254 + B1_Mur2 SINE Alu 28 149 0 6 1407 271 279 59 0 chr4 107792921 107792989 -47837131 - MER82 DNA MER2_type -10 643 572 6 1407 769 184 64 0 chr4 107793532 107793673 -47836447 - B1_Mur4 SINE Alu 0 150 1 6 1407 930 224 0 67 chr4 107793817 107794042 -47836078 + B3 SINE B2 1 210 -6 6 1407 2057 220 22 93 chr4 107794287 107794824 -47835296 - RLTR18 LTR ERVK -95 521 23 6 1407 1047 142 20 35 chr4 107795043 107795240 -47834880 + B2_Mm2 SINE B2 2 195 0 6 1407 2724 138 19 10 chr4 107795295 107795711 -47834409 - MTC LTR MaLR -1 420 1 6 1407 552 216 59 17 chr4 107795759 107795877 -47834243 + RSINE1 SINE B4 3 125 -40 6 1407 354 45 0 0 chr4 107795901 107795945 -47834175 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1407 26 30 0 0 chr4 107795958 107795991 -47834129 + AT_rich Low_complexity Low_complexity 1 33 0 6 1407 495 0 0 0 chr4 107796196 107796251 -47833869 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1407 369 0 0 0 chr4 107796251 107796291 -47833829 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1407 1005 226 39 13 chr4 107796317 107796550 -47833570 - B4A SINE B4 -52 240 2 7 1407 220 240 264 0 chr4 107796568 107796592 -47833528 - B4A SINE B4 -46 246 129 7 1407 468 204 92 0 chr4 107796592 107796690 -47833430 - PB1D9 SINE Alu -7 113 7 7 1407 486 268 0 96 chr4 107796902 107797012 -47833108 + B1_Mur1 SINE Alu 26 124 -25 7 1407 1334 104 16 5 chr4 107797012 107797205 -47832915 - B2_Mm2 SINE B2 0 195 1 7 1407 486 268 0 96 chr4 107797205 107797230 -47832890 + B1_Mur1 SINE Alu 125 148 -1 7 1407 714 178 78 0 chr4 107797322 107797451 -47832669 + B1_Mur3 SINE Alu 5 143 -6 7 1407 5049 111 54 70 chr4 107797451 107798371 -47831749 - RMER17A2 LTR ERVK 0 906 1 7 1407 288 0 0 0 chr4 107798386 107798418 -47831702 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 7 1407 1114 60 0 0 chr4 107798561 107798695 -47831425 + B1_Mus2 SINE Alu 1 134 -13 7 1407 369 262 110 90 chr4 107798711 107798866 -47831254 + RSINE1 SINE B4 8 165 0 7 1407 22 56 0 0 chr4 107798885 107798921 -47831199 + AT_rich Low_complexity Low_complexity 1 36 0 7 1407 302 234 53 26 chr4 107798945 107799059 -47831061 + PB1D10 SINE Alu 1 117 0 7 1407 871 221 127 32 chr4 107799178 107799430 -47830690 - RMER5 LTR ERV1 0 534 259 7 1407 417 247 98 80 chr4 107799436 107799599 -47830521 - RMER10A LTR ERVL -16 426 261 7 1407 237 228 18 0 chr4 107799600 107799657 -47830463 + G-rich Low_complexity Low_complexity 1 58 0 7 1407 412 177 56 103 chr4 107800267 107800374 -47829746 - RMER10A LTR ERVL -340 102 1 7 1407 254 94 0 54 chr4 107800432 107800488 -47829632 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 7 1407 828 125 17 0 chr4 107800488 107800608 -47829512 + B1_Mur3 SINE Alu 23 144 -5 7 1407 576 256 44 44 chr4 107800624 107800804 -47829316 - RMER5 LTR ERV1 -353 181 2 7 1407 640 246 45 22 chr4 107800873 107801052 -47829068 - RMER5 LTR ERV1 0 534 352 7 1407 239 0 0 31 chr4 107801274 107801306 -47828814 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1407 912 190 18 0 chr4 107801435 107801598 -47828522 + B3 SINE B2 36 201 -15 7 1407 270 333 0 0 chr4 107801637 107801721 -47828399 + RMER1B Other Other 43 126 -940 7 1407 269 329 12 0 chr4 107801774 107801859 -47828261 + RMER1C Other Other 34 119 -1223 7 1407 256 246 92 0 chr4 107801895 107801960 -47828160 + RMER1C Other Other 485 555 -787 7 1407 1637 128 24 50 chr4 107801991 107802260 -47827860 - RMER6A LTR ERVK 0 756 494 7 1407 830 54 9 0 chr4 107802260 107802372 -47827748 + (TC)n Simple_repeat Simple_repeat 1 113 0 7 1407 1637 128 24 50 chr4 107802372 107802399 -47827721 - RMER6A LTR ERVK -263 493 468 7 1407 2220 102 12 22 chr4 107802402 107802724 -47827396 - ORR1A2 LTR MaLR -8 319 1 7 1407 2901 88 62 24 chr4 107802724 107803179 -47826941 - RMER6A LTR ERVK -284 472 1 7 1407 624 261 66 35 chr4 107803184 107803451 -47826669 + RMER1B Other Other 189 382 -684 7 1407 450 154 12 49 chr4 107803464 107803546 -47826574 + RMER1B Other Other 585 663 -403 7 1407 233 209 0 0 chr4 107803547 107803590 -47826530 + RLTR13D3 LTR ERVK 1 43 -1071 7 1407 230 158 0 0 chr4 107803943 107803981 -47826139 + B2_Mm2 SINE B2 1 38 -157 7 1407 401 239 95 83 chr4 107804230 107804399 -47825721 + RLTR13D3 LTR ERVK 944 1114 0 7 1407 1137 245 0 13 chr4 107804399 107804635 -47825485 + RMER1B Other Other 659 891 -175 7 1407 205 51 25 25 chr4 107804849 107804889 -47825231 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1407 282 267 85 46 chr4 107805047 107805284 -47824836 + RLTR41 LTR ERV1 191 533 -54 7 1407 558 211 13 64 chr4 107805461 107805485 -47824635 + RMER1B Other Other 918 937 -129 7 1407 1387 74 0 6 chr4 107805485 107805662 -47824458 - B2_Mm2 SINE B2 -18 177 2 7 1407 602 194 23 8 chr4 107805662 107805794 -47824326 + RMER1C Other Other 1211 1342 0 7 1407 538 86 0 0 chr4 107805914 107805984 -47824136 - ORR1A3 LTR MaLR 0 326 257 7 1407 501 276 43 16 chr4 107805984 107806172 -47823948 - L1_Mur3 LINE L1 -970 4910 4718 7 1407 244 156 22 0 chr4 107806175 107806220 -47823900 - L1_Mur3 LINE L1 -1773 4107 4062 7 1407 245 250 185 0 chr4 107806220 107806312 -47823808 + MER67D LTR ERV1 1 109 -405 7 1407 274 250 71 114 chr4 107806855 107806995 -47823125 + RLTR41 LTR ERV1 251 384 -62 7 1407 312 48 0 0 chr4 107807124 107807166 -47822954 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 7 1407 3746 159 39 44 chr4 107807528 107808272 -47821848 + MMVL30-int LTR ERV1 714 1453 -2245 7 1407 679 124 94 172 chr4 107808359 107808603 -47821517 + MMVL30-int LTR ERV1 960 1184 -2115 7 1407 308 118 0 0 chr4 107808583 107808634 -47821486 + MMVL30-int LTR ERV1 1461 1511 -2187 7 1407 567 0 0 0 chr4 107808733 107808796 -47821324 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 7 1407 4320 122 28 33 chr4 107808935 107809343 -47820777 + MMVL30-int LTR ERV1 1501 1914 -1784 7 1407 1175 55 0 7 chr4 107809343 107809490 -47820630 + B1_Mm SINE Alu 2 147 0 7 1407 4320 162 41 36 chr4 107809490 107809902 -47820218 + MMVL30-int LTR ERV1 1915 2223 -1475 7 1407 4845 214 64 26 chr4 107809909 107811401 -47818719 + MMVL30-int LTR ERV1 2875 5392 -2386 7 1407 311 246 184 34 chr4 107811384 107811531 -47818589 + MMVL30-int LTR ERV1 7610 7778 0 7 1407 1679 10 0 25 chr4 107811672 107811870 -47818250 + B2_Mm1a SINE B2 1 193 0 7 1407 236 322 44 88 chr4 107812201 107812361 -47817759 + RLTR41 LTR ERV1 251 403 -43 7 1407 1148 61 0 20 chr4 107812394 107812544 -47817576 - B1_Mus2 SINE Alu 0 147 1 7 1407 896 94 119 54 chr4 107812573 107812735 -47817385 + B2_Mm1t SINE B2 15 189 -4 7 1407 1201 61 7 0 chr4 107812735 107812882 -47817238 + B1_Mus1 SINE Alu 1 148 0 7 1407 2745 169 71 58 chr4 107812892 107813517 -47816603 + RMER19B LTR ERVK 65 886 -16 7 1407 1422 74 16 21 chr4 107813517 107813709 -47816411 + B2_Mm2 SINE B2 2 192 -3 7 1407 1086 37 67 0 chr4 107813791 107813925 -47816195 - B1_Mm SINE Alu 0 147 5 7 1407 414 348 7 14 chr4 107813939 107814082 -47816038 - ID_B1 SINE B4 -2 222 81 7 1407 25 31 0 0 chr4 107814302 107814334 -47815786 + AT_rich Low_complexity Low_complexity 1 32 0 7 1407 569 276 36 29 chr4 107814345 107814483 -47815637 - RSINE1 SINE B4 -25 140 2 7 1407 1381 54 53 26 chr4 107814525 107814714 -47815406 + B2_Mm2 SINE B2 2 195 0 7 1407 3337 112 16 14 chr4 107814723 107815220 -47814900 + LTRIS2 LTR ERV1 67 564 0 7 1407 1612 208 52 82 chr4 107815220 107815425 -47814695 + RLTR19 LTR ERVK 134 336 -163 7 1407 1212 104 43 11 chr4 107815425 107815610 -47814510 + B2_Mm2 SINE B2 1 191 -4 7 1407 1612 208 52 82 chr4 107815610 107815628 -47814492 + RLTR19 LTR ERVK 337 343 -156 7 1407 315 0 0 0 chr4 107815628 107815663 -47814457 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1407 1612 208 52 82 chr4 107815663 107815816 -47814304 + RLTR19 LTR ERVK 344 499 0 7 1407 1349 90 21 16 chr4 107815855 107816047 -47814073 + B2_Mm2 SINE B2 1 193 -2 7 1407 243 0 0 0 chr4 107816788 107816815 -47813305 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1407 506 282 214 63 chr4 107817125 107817439 -47812681 - MTD LTR MaLR -14 405 43 7 1407 968 227 215 54 chr4 107817439 107817793 -47812327 - MTD LTR MaLR 0 419 9 7 1407 245 216 110 98 chr4 107817990 107818072 -47812048 - B3A SINE B2 -1 197 115 7 1407 2059 182 5 40 chr4 107818074 107818498 -47811622 - RLTR9E LTR ERVK 0 409 1 7 1407 559 38 24 60 chr4 107818498 107818581 -47811539 - ETnERV2-int LTR ERVK -1 7405 7326 7 1407 349 36 0 35 chr4 107818581 107818638 -47811482 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 7 1407 5650 47 65 1 chr4 107818638 107819336 -47810784 - RLTR4_Mm LTR ERV1 0 742 1 7 1407 69443 8 2 0 chr4 107819336 107826878 -47803242 - RLTR4_MM-int LTR ERV1 0 7601 46 7 1407 217 231 0 156 chr4 107826878 107826923 -47803197 - B2_Mm2 SINE B2 -117 78 42 7 1407 5669 46 65 1 chr4 107826923 107827621 -47802499 - RLTR4_Mm LTR ERV1 0 742 1 7 1407 1192 57 0 0 chr4 107827622 107827763 -47802357 - B1_Mm SINE Alu -6 141 1 7 1407 217 231 0 156 chr4 107827763 107827792 -47802328 - B2_Mm2 SINE B2 -154 41 14 7 1407 862 221 153 35 chr4 107827842 107828195 -47801925 - RLTR13D6 LTR ERVK -378 477 118 7 1407 4971 117 16 0 chr4 107828195 107828861 -47801259 - ETnERV2-int LTR ERVK -236 7170 6494 7 1407 799 317 20 17 chr4 107828893 107829188 -47800932 - ETnERV2-int LTR ERVK -389 7828 7533 7 1407 455 16 0 46 chr4 107829188 107829253 -47800867 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 7 1407 1118 117 0 6 chr4 107829254 107829417 -47800703 - B2_Mm2 SINE B2 -33 162 1 7 1407 5714 178 30 32 chr4 107829417 107831784 -47798336 - ETnERV2-int LTR ERVK -3321 4085 2074 7 1407 639 272 7 36 chr4 107831796 107831998 -47798122 - ETnERV2-int LTR ERVK -3079 2729 2435 7 1407 1442 184 54 132 chr4 107832011 107832115 -47798005 - MMETn-int LTR ERVK -3681 1163 1060 7 1407 1267 111 21 0 chr4 107832115 107832304 -47797816 + B2_Mm1t SINE B2 1 193 0 7 1407 1442 184 54 132 chr4 107832304 107832682 -47797438 - MMETn-int LTR ERVK -3785 1059 719 7 1407 395 119 0 17 chr4 107832983 107833043 -47797077 - ETnERV2-int LTR ERVK -5095 2149 2091 7 1407 732 217 14 14 chr4 107833137 107833282 -47796838 + RLTR41 LTR ERV1 302 446 0 7 1407 273 268 0 0 chr4 107833320 107833376 -47796744 - ID SINE ID -142 82 27 7 1407 1214 47 0 13 chr4 107833421 107833571 -47796549 + B1_Mus1 SINE Alu 1 148 0 7 1407 371 322 123 8 chr4 107833662 107833690 -47796430 + B1_Mur1 SINE Alu 1 28 -121 7 1407 2257 133 101 56 chr4 107833690 107834136 -47795984 + RMER4A LTR ERVK 1 466 0 7 1407 371 322 123 8 chr4 107834136 107834229 -47795891 + B1_Mur1 SINE Alu 29 136 -13 7 1407 266 0 29 0 chr4 107834229 107834263 -47795857 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7 1407 455 218 226 0 chr4 107834277 107834410 -47795710 + B3A SINE B2 2 164 -34 7 1407 535 147 32 0 chr4 107834538 107834633 -47795487 + B1_Mm SINE Alu 10 107 -40 7 1407 667 238 28 50 chr4 107834618 107834799 -47795321 - MTD LTR MaLR -150 269 93 7 1407 507 250 0 18 chr4 107834784 107834898 -47795222 + PB1D9 SINE Alu 7 118 -2 7 1407 339 247 32 21 chr4 107834884 107834979 -47795141 - MTD LTR MaLR -297 122 27 7 1407 1396 40 102 6 chr4 107835073 107835091 -47795029 - B2_Mm2 SINE B2 0 195 178 7 1407 279 0 0 0 chr4 107835091 107835122 -47794998 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7 1407 1396 40 102 6 chr4 107835122 107835280 -47794840 - B2_Mm2 SINE B2 -18 177 2 7 1407 282 125 0 0 chr4 107835469 107835517 -47794603 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 7 1407 933 118 30 0 chr4 107835520 107835655 -47794465 - B1_Mus1 SINE Alu -7 141 3 7 1407 290 240 25 8 chr4 107835549 107835671 -47794449 - ORR1B1-int LTR MaLR -755 754 631 7 1407 648 130 0 0 chr4 107836022 107836114 -47794006 + B1_Mus2 SINE Alu 7 98 -49 7 1407 692 167 45 0 chr4 107836256 107836388 -47793732 + B1_Mus1 SINE Alu 10 147 -1 7 1407 652 228 72 0 chr4 107836688 107836868 -47793252 + B3 SINE B2 23 215 -1 7 1407 311 222 16 0 chr4 107836896 107836959 -47793161 - PB1D9 SINE Alu -10 110 47 7 1407 655 115 14 0 chr4 107837108 107837247 -47792873 + (TC)n Simple_repeat Simple_repeat 2 142 0 7 1407 408 200 157 28 chr4 107837247 107837355 -47792765 - B1_Mur1 SINE Alu -14 135 14 7 1407 270 0 0 0 chr4 107838797 107838827 -47791293 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1407 887 139 0 28 chr4 107838828 107838969 -47791151 - B1_Mus1 SINE Alu -11 137 1 7 1407 1059 75 0 75 chr4 107838979 107838995 -47791125 - B1_Mus2 SINE Alu 0 147 137 7 1407 234 0 0 0 chr4 107838995 107839021 -47791099 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1407 1059 75 0 75 chr4 107839021 107839163 -47790957 - B1_Mus2 SINE Alu -11 136 1 7 1407 1298 63 0 11 chr4 107839163 107839339 -47790781 - B2_Mm2 SINE B2 -21 174 1 8 1407 845 218 50 0 chr4 107839420 107839599 -47790521 - B3 SINE B2 -28 188 1 8 1407 848 85 131 0 chr4 107839794 107839924 -47790196 - B1_Mm SINE Alu 0 147 1 8 1407 660 212 8 0 chr4 107840085 107840217 -47789903 + B1F2 SINE Alu 2 134 -15 8 1407 378 0 0 0 chr4 107840220 107840262 -47789858 + (TAA)n Simple_repeat Simple_repeat 1 42 0 8 1407 229 289 88 107 chr4 107840304 107840463 -47789657 + RSINE1 SINE B4 10 165 0 8 1407 228 286 119 56 chr4 107840417 107840543 -47789577 - RMER12 LTR ERVK -504 818 685 8 1407 782 150 16 0 chr4 107840518 107840645 -47789475 - B1_Mur3 SINE Alu -2 147 19 8 1407 289 282 82 0 chr4 107841087 107841172 -47788948 - RSINE1 SINE B4 -35 130 39 8 1407 182 105 26 0 chr4 107841235 107841273 -47788847 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 8 1407 326 281 45 0 chr4 107841311 107841400 -47788720 + PB1D10 SINE Alu 25 117 0 8 1407 240 241 63 0 chr4 107841403 107841478 -47788642 + B1_Mur1 SINE Alu 47 137 -12 8 1407 547 266 0 24 chr4 107841529 107841656 -47788464 + ID_B1 SINE B4 75 198 -26 8 1407 288 137 0 0 chr4 107841792 107841843 -47788277 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 8 1407 1266 27 0 7 chr4 107841845 107841993 -47788127 - B1_Mus1 SINE Alu -1 147 1 8 1407 231 289 37 109 chr4 107842579 107842783 -47787337 - MIRb SINE MIR -21 187 1 8 1407 705 168 105 15 chr4 107843013 107843146 -47786974 + B1_Mm SINE Alu 2 146 -1 8 1407 1279 69 51 6 chr4 107843155 107843330 -47786790 - B2_Mm2 SINE B2 -11 184 2 8 1407 215 281 53 0 chr4 107843359 107843416 -47786704 + B1F1 SINE Alu 1 60 -89 8 1407 659 214 21 7 chr4 107843446 107843587 -47786533 - ID_B1 SINE B4 0 224 82 8 1407 238 102 0 114 chr4 107843622 107843666 -47786454 + B3A SINE B2 1 39 -159 8 1407 821 214 109 19 chr4 107843668 107843878 -47786242 - ORR1C2 LTR MaLR -141 243 15 8 1407 645 273 48 0 chr4 107843875 107844040 -47786080 + B3A SINE B2 25 197 -1 8 1407 672 193 55 35 chr4 107844051 107844196 -47785924 + B1_Mur2 SINE Alu 2 149 0 8 1407 952 198 96 5 chr4 107844249 107844447 -47785673 - B3 SINE B2 0 216 1 8 1407 194 294 141 0 chr4 107845142 107845227 -47784893 + L2b LINE L2 3035 3131 -244 8 1407 303 222 60 36 chr4 107847451 107847535 -47782585 + B4 SINE B4 1 86 -206 8 1407 267 211 26 188 chr4 107847564 107847681 -47782439 + B4 SINE B4 195 292 0 8 1407 765 127 0 0 chr4 107847846 107847964 -47782156 + B1_Mur4 SINE Alu 19 136 -14 8 1407 280 355 36 18 chr4 107847957 107847976 -47782144 + B4A SINE B4 68 88 -204 8 1407 448 226 26 86 chr4 107847976 107848092 -47782028 + B1F SINE Alu 2 110 -39 8 1407 231 36 0 0 chr4 107848477 107848505 -47781615 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1407 311 263 220 71 chr4 107848510 107848678 -47781442 + ID_B1 SINE B4 29 221 -3 8 1407 442 145 0 38 chr4 107848604 107848683 -47781437 + B1_Mur1 SINE Alu 73 148 -1 8 1407 23 0 0 0 chr4 107848980 107849003 -47781117 + AT_rich Low_complexity Low_complexity 1 23 0 8 1407 414 191 84 22 chr4 107850162 107850268 -47779852 + PB1D9 SINE Alu 11 119 -1 8 1407 1359 170 4 35 chr4 107852464 107852696 -47777424 + RLTR17 LTR ERVK 202 426 -266 8 1407 691 147 126 63 chr4 107852887 107853061 -47777059 - RMER17C LTR ERVK -5 405 221 8 1407 189 0 0 0 chr4 107853174 107853195 -47776925 + (TGAG)n Simple_repeat Simple_repeat 3 23 0 8 1407 437 271 160 15 chr4 107853202 107853350 -47776770 + B3A SINE B2 32 203 -13 8 1407 517 182 0 0 chr4 107853396 107853484 -47776636 + B3 SINE B2 1 88 -128 8 1407 207 0 0 0 chr4 107853531 107853554 -47776566 + (TC)n Simple_repeat Simple_repeat 1 23 0 8 1407 195 42 0 0 chr4 107853554 107853577 -47776543 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1407 310 218 141 0 chr4 107853929 107854007 -47776113 + B1F SINE Alu 5 93 -56 8 1407 486 162 12 0 chr4 107854098 107854178 -47775942 - PB1D9 SINE Alu 0 120 40 8 1407 1058 16 0 23 chr4 107854773 107854903 -47775217 - B1_Mm SINE Alu 0 147 21 8 1407 307 186 110 55 chr4 107855073 107855164 -47774956 + RMER10A LTR ERVL 11 106 -336 8 1407 382 302 9 19 chr4 107855393 107855501 -47774619 + B3 SINE B2 69 175 -41 8 1407 279 247 13 0 chr4 107855520 107855614 -47774506 + ORR1C2 LTR MaLR 196 327 -57 8 1407 827 104 88 22 chr4 107855693 107855830 -47774290 - B1_Mm SINE Alu -1 146 1 8 1407 597 28 0 0 chr4 107855879 107855950 -47774170 + (TTTCC)n Simple_repeat Simple_repeat 5 75 0 8 1407 234 0 0 0 chr4 107855962 107855988 -47774132 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1407 840 175 0 7 chr4 107855990 107856134 -47773986 - B1_Mur4 SINE Alu -7 143 1 8 1407 2094 144 64 25 chr4 107856464 107856856 -47773264 + MTB_Mm LTR MaLR 1 407 0 8 1407 552 282 136 38 chr4 107857404 107857588 -47772532 + B3 SINE B2 1 202 -14 8 1407 912 191 80 30 chr4 107857602 107857802 -47772318 + B3 SINE B2 2 211 -5 8 1407 918 91 0 0 chr4 107857812 107857933 -47772187 + B1_Mus1 SINE Alu 1 121 -27 8 1407 962 29 77 49 chr4 107858055 107858198 -47771922 - B1_Mus1 SINE Alu -1 147 1 8 1407 210 37 0 0 chr4 107858205 107858232 -47771888 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 8 1407 924 91 8 8 chr4 107858311 107858444 -47771676 - B2_Mm1a SINE B2 -60 133 1 8 1407 294 360 0 0 chr4 107858744 107858844 -47771276 + PB1D7 SINE Alu 14 113 -7 8 1407 542 278 107 34 chr4 107859203 107859352 -47770768 + B3A SINE B2 1 160 -38 8 1407 324 0 0 0 chr4 107859358 107859394 -47770726 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1407 286 276 13 26 chr4 107859403 107859481 -47770639 + PB1D7 SINE Alu 42 118 -2 8 1407 1506 57 0 20 chr4 107859483 107859681 -47770439 + B2_Mm2 SINE B2 1 194 -1 8 1407 189 298 17 17 chr4 107860329 107860387 -47769733 - MIRc SINE MIR -163 105 48 8 1407 758 238 157 38 chr4 107860474 107860710 -47769410 - MLT1E1A LTR MaLR 0 680 417 8 1407 349 298 38 61 chr4 107861201 107861333 -47768787 - B4A SINE B4 -155 137 9 8 1407 230 247 157 24 chr4 107861350 107861433 -47768687 - PB1D10 SINE Alu -1 116 23 8 1407 871 179 78 79 chr4 107861495 107861636 -47768484 - B3 SINE B2 0 198 66 8 1407 1149 59 0 0 chr4 107861636 107861772 -47768348 + B1_Mus1 SINE Alu 2 137 -11 8 1407 195 42 0 0 chr4 107861773 107861797 -47768323 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1407 871 172 79 79 chr4 107861797 107861852 -47768268 - B3 SINE B2 -151 65 1 8 1407 226 200 100 0 chr4 107861854 107861904 -47768216 + MLT1E3 LTR MaLR 560 614 -10 8 1407 239 304 13 0 chr4 107861945 107862024 -47768096 + MIR SINE MIR 183 262 0 8 1407 210 284 44 15 chr4 107862397 107862465 -47767655 + ID SINE ID 2 71 -153 8 1407 696 201 36 0 chr4 107862513 107862652 -47767468 - B1_Mur2 SINE Alu -5 144 1 8 1407 934 148 0 26 chr4 107862688 107862841 -47767279 - B1_Mur4 SINE Alu 0 150 2 8 1407 457 213 172 0 chr4 107862858 107862980 -47767140 + B1_Mur1 SINE Alu 7 149 0 8 1407 1797 150 4 99 chr4 107862995 107863258 -47766862 - RMER17C LTR ERVK 0 410 181 8 1407 195 42 0 0 chr4 107863258 107863282 -47766838 + (GAGTG)n Simple_repeat Simple_repeat 3 26 0 8 1407 1797 150 4 99 chr4 107863282 107863471 -47766649 - RMER17C LTR ERVK -230 180 1 8 1407 246 217 22 0 chr4 107863479 107863525 -47766595 + B4A SINE B4 41 87 -205 8 1407 28 71 0 0 chr4 107863699 107863755 -47766365 + AT_rich Low_complexity Low_complexity 1 56 0 8 1407 499 269 116 7 chr4 107863801 107863947 -47766173 - RSINE1 SINE B4 0 165 4 8 1407 805 154 77 0 chr4 107864103 107864233 -47765887 + B1_Mur4 SINE Alu 2 141 -9 8 1407 329 308 86 73 chr4 107864939 107865240 -47764880 + Lx8 LINE L1 7158 7462 -11 8 1407 3295 136 27 30 chr4 107865568 107866131 -47763989 + RLTR31_Mm LTR ERVK 1 561 0 8 1407 423 245 195 25 chr4 107866727 107866886 -47763234 + B3 SINE B2 1 186 -30 8 1407 1190 56 7 0 chr4 107867043 107867186 -47762934 - B1_Mm SINE Alu -2 145 2 8 1407 616 281 14 14 chr4 107867242 107867383 -47762737 - RSINE1 SINE B4 0 165 25 8 1407 665 225 0 40 chr4 107867563 107867711 -47762409 + B1_Mur4 SINE Alu 5 146 -4 8 1407 304 219 0 86 chr4 107867777 107867847 -47762273 - ID4 SINE ID -9 74 11 8 1407 407 263 144 14 chr4 107868044 107868073 -47762047 - RSINE1 SINE B4 -7 158 126 8 1407 252 0 0 0 chr4 107868073 107868101 -47762019 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1407 447 19 0 0 chr4 107868101 107868152 -47761968 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1407 407 263 144 14 chr4 107868152 107868260 -47761860 - RSINE1 SINE B4 -40 125 3 8 1407 468 214 191 0 chr4 107868288 107868414 -47761706 - ID_B1 SINE B4 0 224 75 8 1407 1024 106 0 0 chr4 107868459 107868601 -47761519 - B1_Mus2 SINE Alu 0 147 6 8 1407 243 273 20 54 chr4 107868499 107868646 -47761474 - ORR1B1-int LTR MaLR -755 754 613 8 1407 287 238 0 0 chr4 107869316 107869379 -47760741 + MYSERV6-int LTR ERVK 66 128 -8831 8 1407 1902 240 67 57 chr4 107869771 107869993 -47760127 + MYSERV-int LTR ERVK 3772 3979 -2571 8 1407 1445 74 16 5 chr4 107869993 107870183 -47759937 + B2_Mm2 SINE B2 1 192 -3 8 1407 1902 240 67 57 chr4 107870183 107870614 -47759506 + MYSERV-int LTR ERVK 3980 4432 -2118 8 1407 1245 266 22 17 chr4 107870615 107870971 -47759149 + MYSERV-int LTR ERVK 4765 5122 -1428 8 1407 458 310 97 11 chr4 107870972 107871158 -47758962 + RMER4A LTR ERVK 246 447 -19 8 1407 1283 88 6 0 chr4 107871164 107871334 -47758786 + B2_Mm1t SINE B2 1 171 -22 9 1407 412 104 9 0 chr4 107871367 107871431 -47758689 + B2_Mm2 SINE B2 47 114 -102 9 1407 216 0 0 0 chr4 107871436 107871460 -47758660 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 9 175 4889 184 112 8 chr4 107871466 107872375 -47757745 + MYSERV-int LTR ERVK 5310 6315 -235 8 1408 3533 28 0 0 chr4 107872375 107872771 -47757349 + MTA_Mm LTR MaLR 1 396 0 9 1408 4889 184 112 8 chr4 107872771 107872983 -47757137 + MYSERV-int LTR ERVK 6316 6547 -3 8 1408 434 281 96 32 chr4 107873031 107873063 -47757057 + RLTR15 LTR ERVK 69 99 -260 9 1408 659 12 12 0 chr4 107873063 107873143 -47756977 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1408 434 281 96 32 chr4 107873143 107873360 -47756760 + RLTR15 LTR ERVK 100 334 -25 9 1408 360 242 81 6 chr4 107873637 107873745 -47756375 - B1_Mur1 SINE Alu -8 112 4 9 1408 284 243 25 75 chr4 107873648 107873768 -47756352 - MT2B LTR ERVL -340 261 148 9 1408 423 0 0 0 chr4 107874029 107874076 -47756044 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1408 371 257 9 52 chr4 107874196 107874311 -47755809 + PB1D9 SINE Alu 11 120 0 9 1408 221 290 16 0 chr4 107874341 107874403 -47755717 + BC1_Mm scRNA scRNA 2 64 -88 9 1408 531 91 0 0 chr4 107874460 107874537 -47755583 + L1_Mus2 LINE L1 6490 6566 0 9 1408 1226 41 7 0 chr4 107874580 107874725 -47755395 + B1_Mm SINE Alu 2 147 0 9 1408 1381 72 39 0 chr4 107874749 107874929 -47755191 + B2_Mm2 SINE B2 2 188 -7 9 1408 225 0 0 0 chr4 107875204 107875229 -47754891 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 1408 636 191 21 8 chr4 107875229 107875353 -47754767 - B1_Mus1 SINE Alu -13 135 7 9 1408 249 28 0 53 chr4 107875392 107875430 -47754690 - B1_Mur4 SINE Alu -1 149 114 9 1408 261 0 0 0 chr4 107875430 107875459 -47754661 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1408 1163 52 0 0 chr4 107875460 107875595 -47754525 - B1_Mm SINE Alu -12 135 1 9 1408 1387 63 23 0 chr4 107875595 107875770 -47754350 - B2_Mm2 SINE B2 -15 180 2 9 1408 270 333 0 0 chr4 107875958 107876027 -47754093 - PB1D10 SINE Alu -7 110 42 9 1408 285 221 25 49 chr4 107876125 107876206 -47753914 + MERVK26-int LTR ERVK 2368 2446 -4473 9 1408 955 262 53 79 chr4 107876228 107876622 -47753498 + BGLII_B LTR ERVK 31 414 -27 9 1408 1832 256 20 13 chr4 107876652 107877100 -47753020 + MERVK26-int LTR ERVK 2454 2904 -4015 9 1408 344 323 85 0 chr4 107878077 107878207 -47751913 - MIRb SINE MIR -34 234 94 9 1408 747 165 29 29 chr4 107878340 107878477 -47751643 - B1_Mus2 SINE Alu -8 139 3 9 1408 1579 52 0 5 chr4 107878565 107878759 -47751361 - B2_Mm1a SINE B2 0 193 1 9 1408 882 128 20 140 chr4 107878795 107878995 -47751125 + B2_Mm2 SINE B2 1 176 -19 9 1408 859 249 35 5 chr4 107879030 107879232 -47750888 - B3 SINE B2 -7 209 2 9 1408 187 271 83 0 chr4 107879237 107879285 -47750835 + MIR3 SINE MIR 117 168 -40 9 1408 297 0 0 0 chr4 107879446 107879479 -47750641 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1408 612 56 0 77 chr4 107879479 107879596 -47750524 + (GA)n Simple_repeat Simple_repeat 2 109 0 9 1408 540 213 35 56 chr4 107879654 107879798 -47750322 + ID_B1 SINE B4 82 222 -2 9 1408 212 291 25 25 chr4 107879977 107879997 -47750123 + B4A SINE B4 69 88 -204 9 1408 313 276 160 9 chr4 107879997 107880103 -47750017 + PB1 SINE Alu 4 125 -2 9 1408 606 244 113 11 chr4 107880116 107880302 -47749818 + B3 SINE B2 2 206 -10 9 1408 361 250 32 54 chr4 107880354 107880447 -47749673 + B1_Mur1 SINE Alu 47 137 -12 9 1408 567 0 0 0 chr4 107880447 107880510 -47749610 + (TAAAA)n Simple_repeat Simple_repeat 3 65 0 9 1408 259 241 22 67 chr4 107880518 107880607 -47749513 + B4 SINE B4 2 86 -206 9 1408 324 0 0 0 chr4 107880636 107880672 -47749448 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1408 627 267 22 0 chr4 107880803 107880938 -47749182 - RSINE1 SINE B4 -22 143 6 9 1408 276 272 53 21 chr4 107880947 107881041 -47749079 - ID_B1 SINE B4 0 224 128 9 1408 302 306 24 0 chr4 107881254 107881339 -47748781 - ID_B1 SINE B4 0 224 138 9 1408 1393 285 139 26 chr4 107881517 107881987 -47748133 + Lx8 LINE L1 6389 6921 -552 9 1408 397 290 132 41 chr4 107881987 107882253 -47747867 + B4A SINE B4 1 290 -2 9 1408 1393 285 139 26 chr4 107882253 107882464 -47747656 + Lx8 LINE L1 6922 7146 -327 9 1408 814 129 49 21 chr4 107882467 107882600 -47747520 + B2_Mm1t SINE B2 23 160 -33 9 1408 239 26 0 73 chr4 107882600 107882641 -47747479 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 9 1408 212 303 71 57 chr4 107882899 107882969 -47747151 + RSINE1 SINE B4 4 74 -91 9 1408 248 258 20 92 chr4 107883023 107883043 -47747077 + B4A SINE B4 70 122 -170 9 1408 253 210 15 61 chr4 107883043 107883109 -47747011 + B1_Mur3 SINE Alu 1 63 -86 9 1408 248 258 20 92 chr4 107883109 107883121 -47746999 + B4A SINE B4 123 160 -132 9 1408 834 102 0 8 chr4 107883142 107883270 -47746850 - B1_Mus1 SINE Alu 0 148 22 9 1408 443 219 24 0 chr4 107883250 107883332 -47746788 + B1_Mur1 SINE Alu 56 139 -10 9 1408 24 0 0 0 chr4 107883337 107883361 -47746759 + AT_rich Low_complexity Low_complexity 1 24 0 9 1408 308 292 159 0 chr4 107883447 107883560 -47746560 + RSINE1 SINE B4 18 148 -17 9 1408 425 301 7 31 chr4 107883577 107883709 -47746411 - B1F SINE Alu -24 123 2 9 1408 230 388 0 72 chr4 107883709 107883753 -47746367 - B4A SINE B4 -206 86 52 9 1408 304 263 60 50 chr4 107883737 107883755 -47746365 - PB1 SINE Alu -6 121 105 9 1408 1490 59 5 5 chr4 107883755 107883942 -47746178 + B2_Mm2 SINE B2 2 188 -7 9 1408 304 263 60 50 chr4 107883942 107884023 -47746097 - PB1 SINE Alu -23 104 21 9 1408 320 274 91 33 chr4 107884034 107884155 -47745965 + RSINE1 SINE B4 2 129 -36 9 1408 227 297 70 154 chr4 107884214 107884357 -47745763 + B1F2 SINE Alu 6 136 -13 9 1408 228 280 151 0 chr4 107884419 107884452 -47745668 - PB1D7 SINE Alu 0 120 39 9 1408 239 211 19 0 chr4 107884452 107884504 -47745616 - ID_B1 SINE B4 -69 155 103 9 1408 771 201 104 16 chr4 107884631 107884823 -47745297 + B3 SINE B2 1 209 -7 9 1408 225 0 0 0 chr4 107884839 107884864 -47745256 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1408 1162 75 0 0 chr4 107884864 107885011 -47745109 - B1_Mus2 SINE Alu 0 147 1 9 1408 444 219 28 171 chr4 107885140 107885316 -47744804 + B3 SINE B2 60 210 -6 9 1408 227 290 48 0 chr4 107885346 107885408 -47744712 + PB1 SINE Alu 43 107 -20 9 1408 815 107 8 39 chr4 107885475 107885602 -47744518 + B1_Mur4 SINE Alu 28 150 0 9 1408 212 113 18 54 chr4 107885652 107885708 -47744412 + A-rich Low_complexity Low_complexity 2 55 0 9 1408 318 311 78 0 chr4 107885716 107885797 -47744323 + ID_B1 SINE B4 82 169 -55 9 1408 340 233 144 40 chr4 107885797 107885922 -47744198 + RMER15 LTR ERVL 1 138 -437 9 1408 460 210 210 0 chr4 107886531 107886650 -47743470 + B1_Mus2 SINE Alu 2 145 -2 9 1408 525 55 0 0 chr4 107886656 107886729 -47743391 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 9 1408 1261 35 0 0 chr4 107886729 107886872 -47743248 + B1_Mm SINE Alu 3 145 -2 9 1408 384 200 0 0 chr4 107886891 107886976 -47743144 + GA-rich Low_complexity Low_complexity 2 86 0 9 1408 2967 161 12 4 chr4 107886979 107887473 -47742647 + Lx LINE L1 6136 6633 -21 9 1408 350 290 129 0 chr4 107887574 107887667 -47742453 - B1F2 SINE Alu -39 110 6 9 1408 544 232 87 104 chr4 107887673 107887846 -47742274 - B3A SINE B2 -15 183 14 9 1408 683 225 109 26 chr4 107887929 107888121 -47741999 - B3 SINE B2 -8 208 1 9 1408 895 173 196 0 chr4 107888152 107888331 -47741789 + B3 SINE B2 2 215 -1 9 1408 406 245 11 0 chr4 107888599 107888693 -47741427 + ID_B1 SINE B4 95 189 -35 9 1408 1293 71 27 32 chr4 107888803 107888991 -47741129 + B2_Mm1t SINE B2 1 187 -6 9 1408 1140 102 0 0 chr4 107889062 107889209 -47740911 + B1_Mus1 SINE Alu 2 148 0 9 1408 618 122 217 0 chr4 107889355 107889470 -47740650 - B1_Mur4 SINE Alu -9 141 2 9 1408 333 210 0 0 chr4 107889663 107889725 -47740395 + B1F SINE Alu 56 117 -32 9 1408 227 338 0 13 chr4 107889675 107889753 -47740367 + ID_B1 SINE B4 146 222 -2 9 1408 327 195 37 49 chr4 107889761 107889842 -47740278 + B3 SINE B2 1 80 -136 9 1408 215 137 19 38 chr4 107890328 107890381 -47739739 + (CCCG)n Simple_repeat Simple_repeat 4 55 0 9 1408 191 61 30 0 chr4 107890873 107890906 -47739214 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 9 1408 465 176 209 9 chr4 107890907 107891029 -47739091 - B1_Mur4 SINE Alu 0 147 3 9 1408 222 256 89 0 chr4 107891031 107891121 -47738999 - BC1_Mm scRNA scRNA -50 102 5 9 1408 311 239 45 0 chr4 107891735 107891802 -47738318 - ID_B1 SINE B4 -37 187 118 9 1408 336 189 6 51 chr4 107892008 107892100 -47738020 + PB1D9 SINE Alu 17 105 -42 9 1408 315 141 0 0 chr4 107892311 107892375 -47737745 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1408 1159 83 0 0 chr4 107892510 107892655 -47737465 + B1_Mus2 SINE Alu 1 145 -2 9 1408 273 309 53 38 chr4 107892663 107892794 -47737326 + B4A SINE B4 67 199 -93 9 1408 635 215 0 89 chr4 107892685 107892843 -47737277 + B1_Mur2 SINE Alu 5 148 -1 9 1408 214 225 0 0 chr4 107892865 107892905 -47737215 + RSINE1 SINE B4 3 42 -123 9 1408 582 54 0 0 chr4 107892921 107892995 -47737125 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 9 1408 207 0 0 0 chr4 107893004 107893027 -47737093 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1408 863 95 101 13 chr4 107893027 107893176 -47736944 - B2_Mm2 SINE B2 -33 162 1 9 1408 295 265 19 75 chr4 107893176 107893282 -47736838 - RSINE1 SINE B4 -64 101 2 9 1408 298 250 26 0 chr4 107893294 107893370 -47736750 - ID_B1 SINE B4 -10 214 137 1 1408 606 215 51 15 chr4 107893873 107894010 -47736110 - B1_Mur1 SINE Alu 0 149 8 1 1408 262 221 14 56 chr4 107893954 107894026 -47736094 - B4 SINE B4 -143 149 81 1 1408 670 188 7 36 chr4 107894277 107894415 -47735705 + B3 SINE B2 7 140 -76 1 1408 362 278 122 23 chr4 107894417 107894631 -47735489 + RLTR12B LTR ERVK 17 251 -277 1 1408 4357 20 0 0 chr4 107894705 107895193 -47734927 + L1Md_A LINE L1 6095 6582 0 1 1408 247 293 29 29 chr4 107895196 107895298 -47734822 + RLTR15 LTR ERVK 193 294 -65 1 1408 371 247 0 0 chr4 107895336 107895413 -47734707 + B3 SINE B2 135 211 -5 1 1408 1180 68 0 0 chr4 107895450 107895598 -47734522 + B1_Mus1 SINE Alu 1 148 0 1 1408 198 0 0 0 chr4 107895598 107895620 -47734500 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1408 638 58 11 0 chr4 107895711 107895798 -47734322 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 1408 506 174 122 0 chr4 107895804 107895902 -47734218 - PB1D9 SINE Alu -9 111 2 1 1408 258 194 0 0 chr4 107896253 107896325 -47733795 + A-rich Low_complexity Low_complexity 37 108 0 1 1408 987 78 13 7 chr4 107896346 107896500 -47733620 - B2_Mm2 SINE B2 -3 192 38 1 1408 558 252 30 0 chr4 107896542 107896677 -47733443 + RSINE1 SINE B4 27 165 0 1 1408 1462 214 50 45 chr4 107896844 107897324 -47732796 + RMER12 LTR ERVK 1 643 -761 1 1408 562 192 108 0 chr4 107897324 107897444 -47732676 + RLTR20D LTR ERVK 1 133 -435 1 1408 1300 110 4 31 chr4 107897491 107897716 -47732404 - BGLII_B LTR ERVK -222 219 1 1 1408 1005 237 178 38 chr4 107897720 107898163 -47731957 + RLTR16 LTR ERVK 1 505 0 1 1408 556 116 170 0 chr4 107898163 107898275 -47731845 + RMER12 LTR ERVK 1154 1284 -38 1 1408 396 158 13 26 chr4 107898476 107898554 -47731566 - B3 SINE B2 -91 125 49 1 1408 189 0 0 0 chr4 107898563 107898584 -47731536 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1408 306 0 0 0 chr4 107898584 107898617 -47731503 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1408 1049 84 28 0 chr4 107898789 107898932 -47731188 + B1_Mm SINE Alu 1 147 0 1 1408 351 288 95 8 chr4 107898953 107899079 -47731041 + B1F SINE Alu 13 149 0 1 1408 413 268 45 0 chr4 107899129 107899241 -47730879 - ID_B1 SINE B4 -4 220 104 1 1408 917 85 37 37 chr4 107899242 107899377 -47730743 + B1_Mus1 SINE Alu 1 135 -13 1 1408 641 205 0 8 chr4 107899440 107899451 -47730669 - B1_Mus1 SINE Alu -21 127 117 1 1408 1085 90 14 7 chr4 107899451 107899597 -47730523 - B1_Mus2 SINE Alu 0 147 1 1 1408 641 205 0 8 chr4 107899597 107899713 -47730407 - B1_Mus1 SINE Alu -32 116 1 1 1408 345 239 21 11 chr4 107899632 107899725 -47730395 - B4A SINE B4 -125 167 74 1 1408 739 206 14 7 chr4 107899725 107899872 -47730248 - B1_Mur2 SINE Alu 0 149 2 1 1408 437 306 17 75 chr4 107899877 107900050 -47730070 - B3A SINE B2 0 198 36 1 1408 293 278 32 43 chr4 107900057 107900151 -47729969 - B1_Mur1 SINE Alu 0 149 57 1 1408 463 190 11 32 chr4 107900167 107900265 -47729855 + B1_Mus1 SINE Alu 1 95 -52 1 1408 324 161 0 0 chr4 107900279 107900341 -47729779 + GA-rich Low_complexity Low_complexity 2 63 0 1 1408 1449 81 16 0 chr4 107900366 107900552 -47729568 - B2_Mm2 SINE B2 -6 189 1 1 1408 261 0 0 0 chr4 107900647 107900676 -47729444 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1408 279 354 115 0 chr4 107900677 107900790 -47729330 - RSINE1 SINE B4 -37 128 3 1 1408 333 206 0 164 chr4 107900903 107901019 -47729101 + PB1 SINE Alu 14 110 -17 1 1408 754 167 37 29 chr4 107901020 107901156 -47728964 - B1_Mur4 SINE Alu -11 139 3 1 1408 207 100 0 0 chr4 107901166 107901196 -47728924 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1408 295 304 83 68 chr4 107901320 107901525 -47728595 - MER115 DNA Tip100 -78 615 408 1 1408 1254 28 0 0 chr4 107901610 107901755 -47728365 - B1_Mus2 SINE Alu -2 145 1 1 1408 645 246 0 0 chr4 107901759 107901893 -47728227 - B1_Mus1 SINE Alu -4 144 11 1 1408 216 311 97 70 chr4 107902082 107902196 -47727924 - PB1D10 SINE Alu 0 117 1 1 1408 428 191 45 18 chr4 107902666 107902778 -47727342 - B1F SINE Alu 0 149 35 1 1408 649 183 129 8 chr4 107902832 107902964 -47727156 - RSINE1 SINE B4 -15 150 3 1 1408 389 196 258 0 chr4 107903148 107903245 -47726875 + B1_Mur2 SINE Alu 1 122 -27 1 1408 707 156 7 88 chr4 107903431 107903579 -47726541 - B1_Mus2 SINE Alu -11 136 1 1 1408 308 291 0 97 chr4 107903589 107903703 -47726417 - PB1 SINE Alu -7 120 18 1 1408 258 229 262 12 chr4 107904599 107904683 -47725437 + PB1D10 SINE Alu 13 117 0 1 1408 464 231 69 0 chr4 107904688 107904818 -47725302 + ID_B1 SINE B4 84 222 -2 1 1408 808 117 79 21 chr4 107905164 107905304 -47724816 - B1_Mur2 SINE Alu 0 149 2 1 1408 656 92 147 0 chr4 107905835 107905944 -47724176 + B1_Mus2 SINE Alu 23 147 0 1 1408 210 273 0 0 chr4 107906364 107906408 -47723712 - B4A SINE B4 -167 125 82 1 1408 236 392 10 0 chr4 107907006 107907103 -47723017 - PB1D10 SINE Alu -19 98 1 1 1408 288 239 168 17 chr4 107907350 107907469 -47722651 - B1F SINE Alu 0 149 13 1 1408 485 184 11 11 chr4 107907729 107907817 -47722303 - B1F SINE Alu -60 89 2 1 1408 232 203 136 0 chr4 107907865 107907924 -47722196 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 1408 410 200 133 0 chr4 107909023 107909113 -47721007 - B3 SINE B2 -24 192 91 1 1408 248 289 92 0 chr4 107909116 107909192 -47720928 + B4 SINE B4 54 136 -156 1 1408 589 191 17 9 chr4 107909359 107909475 -47720645 + PB1D9 SINE Alu 1 117 -3 1 1408 729 132 22 72 chr4 107909516 107909655 -47720465 + B1_Mus1 SINE Alu 17 148 0 1 1408 287 175 362 0 chr4 107909706 107909786 -47720334 + B3 SINE B2 97 205 -11 1 1408 295 195 0 74 chr4 107909787 107909865 -47720255 + B1F1 SINE Alu 60 132 -18 1 1408 576 200 92 0 chr4 107910353 107910483 -47719637 + B1_Mur3 SINE Alu 1 142 -7 1 1408 599 173 43 57 chr4 107910775 107910916 -47719204 + B2_Mm2 SINE B2 34 172 -23 1 1408 234 204 0 0 chr4 107910920 107910978 -47719142 + L1_Mur3 LINE L1 4903 4963 -1183 1 1408 369 159 87 10 chr4 107911123 107911215 -47718905 - B1_Mur1 SINE Alu -14 135 5 1 1408 372 231 38 10 chr4 107911221 107911358 -47718762 + L1_Mur3 LINE L1 5092 5239 -904 1 1408 453 262 95 0 chr4 107911434 107911560 -47718560 - ID_B1 SINE B4 -19 205 68 1 1408 393 239 53 0 chr4 107911578 107911726 -47718394 + L1_Mur3 LINE L1 5281 5440 -851 1 1408 463 198 23 0 chr4 107912153 107912239 -47717881 - B1_Mur4 SINE Alu -61 89 2 1 1408 411 21 0 0 chr4 107912262 107912310 -47717810 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1408 231 103 0 0 chr4 107912533 107912572 -47717548 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 1 1408 1166 68 0 13 chr4 107912579 107912728 -47717392 - B1_Mus2 SINE Alu 0 147 1 1 1408 243 309 12 137 chr4 107913118 107913279 -47716841 - B1F SINE Alu -7 142 2 1 1408 663 215 80 23 chr4 107913430 107913624 -47716496 + B3 SINE B2 29 216 0 1 1408 457 274 144 18 chr4 107913761 107913928 -47716192 - ID_B1 SINE B4 -14 210 23 1 1408 1097 56 21 0 chr4 107914064 107914207 -47715913 - B1_Mus2 SINE Alu 0 147 2 1 1408 323 198 115 11 chr4 107914233 107914320 -47715800 - PB1D10 SINE Alu -10 107 12 1 1408 241 290 0 0 chr4 107914276 107914338 -47715782 - B4 SINE B4 -152 140 79 1 1408 583 291 60 34 chr4 107914955 107915190 -47714930 + ORR1D2 LTR MaLR 11 251 -119 1 1408 1196 68 0 0 chr4 107915222 107915369 -47714751 - B1_Mus2 SINE Alu 0 147 1 1 1408 400 277 133 36 chr4 107915421 107915446 -47714674 - B3A SINE B2 -4 194 174 1 1408 521 0 31 0 chr4 107915446 107915510 -47714610 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 1408 462 259 151 0 chr4 107915510 107915649 -47714471 - B3 SINE B2 -43 173 14 1 1408 319 167 0 16 chr4 107915740 107915801 -47714319 - B1_Mus2 SINE Alu 0 147 88 1 1408 405 320 14 72 chr4 107915797 107915935 -47714185 - ID_B1 SINE B4 -94 130 1 1 1408 456 271 33 0 chr4 107915935 107916057 -47714063 - B1F SINE Alu -1 148 23 1 1408 353 315 20 34 chr4 107916057 107916083 -47714037 - ID_B1 SINE B4 -1 223 78 1 1408 833 182 28 7 chr4 107916090 107916234 -47713886 - B1_Mur2 SINE Alu -2 147 1 1 1408 234 0 0 0 chr4 107916266 107916292 -47713828 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1408 644 175 175 0 chr4 107916292 107916412 -47713708 - B1_Mur4 SINE Alu -9 141 1 1 1408 245 214 144 117 chr4 107916419 107916530 -47713590 - ID_B1 SINE B4 0 224 111 1 1408 1533 58 16 5 chr4 107916598 107916790 -47713330 + B2_Mm2 SINE B2 2 195 0 1 1408 311 253 89 0 chr4 107916795 107916874 -47713246 - ID_B1 SINE B4 -133 91 6 1 1408 1734 26 0 0 chr4 107916910 107917103 -47713017 + B2_Mm1t SINE B2 1 193 0 1 1408 452 286 82 0 chr4 107917124 107917271 -47712849 - RSINE1 SINE B4 -4 161 3 1 1408 450 256 57 28 chr4 107917785 107917926 -47712194 - RSINE1 SINE B4 -5 160 16 1 1408 802 214 68 22 chr4 107917980 107918297 -47711823 + MTD LTR MaLR 20 411 -8 1 1408 380 240 263 0 chr4 107918492 107918667 -47711453 - ID_B1 SINE B4 -1 223 3 1 1408 324 0 0 0 chr4 107918696 107918732 -47711388 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1408 505 217 18 36 chr4 107918743 107918853 -47711267 - RSINE1 SINE B4 -42 123 16 1 1408 3428 18 8 10 chr4 107918892 107919289 -47710831 + MTA_Mm LTR MaLR 1 396 0 1 1408 9752 15 3 0 chr4 107919289 107920384 -47709736 + MTA_Mm-int LTR MaLR 1 1098 0 1 1408 3442 15 8 10 chr4 107920384 107920781 -47709339 + MTA_Mm LTR MaLR 1 396 0 1 1408 876 124 29 0 chr4 107920818 107920955 -47709165 + B1_Mus1 SINE Alu 1 141 -7 1 1408 198 0 0 0 chr4 107920965 107920987 -47709133 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1408 633 228 22 0 chr4 107921565 107921701 -47708419 - B1_Mur1 SINE Alu -8 141 3 1 1408 331 243 23 122 chr4 107921591 107921722 -47708398 - MT2B LTR ERVL -332 269 152 1 1408 398 287 71 12 chr4 107921758 107921927 -47708193 - B3 SINE B2 -15 201 23 1 1408 944 232 20 5 chr4 107922010 107922209 -47707911 + B3 SINE B2 5 206 -10 1 1408 546 226 212 38 chr4 107922342 107922526 -47707594 + B3 SINE B2 1 216 0 1 1408 643 117 25 0 chr4 107922697 107922817 -47707303 + (GGGGA)n Simple_repeat Simple_repeat 3 125 0 1 1408 1011 196 29 24 chr4 107922828 107923037 -47707083 + B3 SINE B2 1 210 -6 1 1408 378 200 67 0 chr4 107923643 107923718 -47706402 - ID4 SINE ID -1 82 3 1 1408 530 256 36 71 chr4 107923774 107923942 -47706178 - RSINE1 SINE B4 -1 164 3 1 1408 670 233 0 0 chr4 107923951 107924084 -47706036 - ID_B1 SINE B4 -4 220 88 1 1408 1496 201 7 7 chr4 107924201 107924491 -47705629 + B4A SINE B4 1 290 -2 1 1408 388 257 24 89 chr4 107924624 107924748 -47705372 - RSINE1 SINE B4 -5 160 45 1 1408 705 231 7 26 chr4 107925055 107925206 -47704914 - B1_Mur2 SINE Alu 0 149 2 1 1408 189 0 0 0 chr4 107925357 107925378 -47704742 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1408 423 223 245 13 chr4 107925378 107925537 -47704583 - B3 SINE B2 -19 197 2 1 1408 363 297 0 0 chr4 107925558 107925649 -47704471 - ID_B1 SINE B4 -36 188 98 1 1408 491 276 31 25 chr4 107926064 107926224 -47703896 - B3 SINE B2 -41 175 15 1 1408 239 270 53 53 chr4 107926291 107926384 -47703736 - B4A SINE B4 -1 291 199 1 1408 1168 264 64 3 chr4 107926384 107926695 -47703425 + MTE2b LTR MaLR 1 330 -49 1 1408 255 213 0 0 chr4 107927043 107927090 -47703030 - ID SINE ID -176 48 2 1 1408 299 257 0 14 chr4 107927127 107927198 -47702922 + ID4 SINE ID 4 73 -10 1 1408 1224 122 26 11 chr4 107927288 107927479 -47702641 - B2_Mm2 SINE B2 0 195 2 1 1408 407 266 113 17 chr4 107927489 107927604 -47702516 - B1_Mur3 SINE Alu -21 128 3 1 1408 239 290 29 0 chr4 107927626 107927695 -47702425 + ID_B1 SINE B4 87 157 -67 1 1408 802 175 7 0 chr4 107928251 107928388 -47701732 + B1_Mur4 SINE Alu 1 138 -12 1 1408 324 0 0 0 chr4 107928390 107928426 -47701694 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1408 933 53 103 22 chr4 107928443 107928579 -47701541 - B1_Mm SINE Alu 0 147 1 1 1408 320 291 109 7 chr4 107928582 107928699 -47701421 - B3A SINE B2 -42 174 48 1 1408 395 272 0 10 chr4 107928999 107929103 -47701017 + PB1D10 SINE Alu 15 117 0 1 1408 737 125 0 0 chr4 107929301 107929413 -47700707 + B1_Mus2 SINE Alu 21 132 -15 1 1408 195 114 0 0 chr4 107929439 107929474 -47700646 + (CGAA)n Simple_repeat Simple_repeat 2 36 0 1 1408 213 121 0 0 chr4 107929475 107929508 -47700612 + (GGGGA)n Simple_repeat Simple_repeat 2 34 0 1 1408 194 265 71 12 chr4 107929675 107929759 -47700361 + MIRb SINE MIR 111 199 -69 1 1408 309 26 0 0 chr4 107929876 107929914 -47700206 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 1408 239 140 0 9 chr4 107929928 107929976 -47700144 - B2_Mm2 SINE B2 -107 109 64 1 1408 1192 84 72 0 chr4 107930014 107930181 -47699939 - B2_Mm1t SINE B2 -13 180 2 1 1408 1265 44 0 0 chr4 107930220 107930379 -47699741 + B2_Mm1a SINE B2 2 160 -33 1 1408 480 59 0 0 chr4 107930379 107930447 -47699673 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 1 1408 626 262 14 0 chr4 107930560 107930701 -47699419 - B1_Mur1 SINE Alu -6 143 1 1 1408 493 238 29 103 chr4 107930794 107930930 -47699190 - B3 SINE B2 -90 126 1 1 1408 353 282 48 16 chr4 107930931 107931057 -47699063 - B1F SINE Alu -17 132 3 1 1408 224 111 22 0 chr4 107931068 107931113 -47699007 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1408 408 284 7 101 chr4 107931123 107931272 -47698848 - RSINE1 SINE B4 -29 136 2 1 1408 288 250 13 38 chr4 107931286 107931365 -47698755 - ID4_ SINE ID -2 81 5 1 1408 665 242 0 0 chr4 107931383 107931511 -47698609 - B1_Mur1 SINE Alu 0 149 22 1 1408 937 229 10 5 chr4 107931550 107931743 -47698377 - ID_B1 SINE B4 -20 204 11 1 1408 506 288 41 18 chr4 107931858 107932028 -47698092 - B4A SINE B4 -118 174 1 1 1408 639 175 88 0 chr4 107932419 107932533 -47697587 - B3 SINE B2 -86 130 7 1 1408 465 323 0 25 chr4 107933493 107933655 -47696465 + RSINE1 SINE B4 4 161 -4 1 1408 370 288 68 0 chr4 107933894 107934012 -47696108 + B1F SINE Alu 11 136 -13 1 1408 390 21 0 0 chr4 107934149 107934196 -47695924 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 1 1408 551 180 144 0 chr4 107934197 107934308 -47695812 - B1_Mur1 SINE Alu -11 138 12 1 1408 361 318 122 0 chr4 107934378 107934485 -47695635 + RSINE1 SINE B4 29 148 -17 1 1408 667 197 66 0 chr4 107934544 107934666 -47695454 + B1_Mur4 SINE Alu 2 131 -19 1 1408 234 150 0 0 chr4 107934692 107934732 -47695388 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 1 1408 358 254 32 84 chr4 107934734 107934889 -47695231 + B1F1 SINE Alu 2 148 -1 1 1408 313 255 36 54 chr4 107935041 107935219 -47694901 + B3 SINE B2 2 185 -13 1 1408 842 147 0 34 chr4 107935230 107935378 -47694742 - B1_Mus2 SINE Alu 0 147 5 1 1408 225 215 45 102 chr4 107935467 107935555 -47694565 + RSINE1 SINE B4 14 96 -69 1 1408 218 32 0 31 chr4 107935602 107935634 -47694486 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 1 1408 1196 56 0 0 chr4 107935830 107935973 -47694147 + B1_Mm SINE Alu 2 144 -3 1 1408 252 0 0 0 chr4 107935974 107936002 -47694118 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1408 982 131 17 6 chr4 107936008 107936184 -47693936 + GA-rich Low_complexity Low_complexity 3 180 0 1 1408 781 199 127 30 chr4 107936641 107936838 -47693282 + B3 SINE B2 1 216 0 1 1408 460 241 20 81 chr4 107936862 107937011 -47693109 + B1_Mur1 SINE Alu 10 149 0 1 1408 798 126 24 0 chr4 107937093 107937220 -47692900 - B3 SINE B2 -86 130 1 1 1408 239 288 17 0 chr4 107937232 107937291 -47692829 + ID_B1 SINE B4 81 140 -84 1 1408 291 185 19 0 chr4 107937239 107937293 -47692827 + B1F SINE Alu 7 61 -88 1 1408 444 222 110 8 chr4 107937608 107937726 -47692394 - B1F1 SINE Alu -2 147 18 1 1408 876 184 38 75 chr4 107937770 107937982 -47692138 - B3 SINE B2 -11 205 2 1 1408 21 0 0 0 chr4 107937982 107938003 -47692117 + AT_rich Low_complexity Low_complexity 1 21 0 1 1408 548 155 19 19 chr4 107938021 107938126 -47691994 - PB1D9 SINE Alu -6 114 10 1 1408 265 322 50 0 chr4 107938139 107938236 -47691884 - B1_Mur1 SINE Alu -34 115 13 1 1408 730 146 16 0 chr4 107939781 107939904 -47690216 + B1_Mur2 SINE Alu 19 143 -6 1 1408 436 131 23 35 chr4 107939996 107940083 -47690037 - B1_Mur3 SINE Alu 0 149 64 1 1408 537 269 50 19 chr4 107940134 107940293 -47689827 - RSINE1 SINE B4 0 165 2 1 1408 235 217 0 0 chr4 107940309 107940355 -47689765 - PB1D9 SINE Alu -7 113 68 1 1408 247 254 34 0 chr4 107940404 107940463 -47689657 + B1F1 SINE Alu 12 72 -77 1 1408 1061 55 0 7 chr4 107940642 107940788 -47689332 + B2_Mm2 SINE B2 50 194 -1 1 1408 234 195 0 0 chr4 107941228 107941269 -47688851 - B3A SINE B2 -119 79 39 1 1408 676 183 8 23 chr4 107941532 107941661 -47688459 - B1_Mur4 SINE Alu 0 150 24 1 1408 280 230 65 129 chr4 107941533 107941688 -47688432 - B4 SINE B4 -68 224 80 1 1408 878 202 63 5 chr4 107942031 107942220 -47687900 + B3 SINE B2 2 201 -15 1 1408 471 146 223 0 chr4 107942220 107942323 -47687797 + B1_Mus1 SINE Alu 23 148 0 1 1408 1239 41 0 0 chr4 107942326 107942473 -47687647 + B1_Mus2 SINE Alu 1 147 0 1 1408 564 272 7 0 chr4 107942539 107942675 -47687445 - ID_B1 SINE B4 -6 218 82 1 1408 357 250 36 0 chr4 107942694 107942778 -47687342 - RSINE1 SINE B4 -7 158 72 1 1408 802 59 246 0 chr4 107942791 107942909 -47687211 - B1_Mus2 SINE Alu 0 147 1 1 1408 282 247 86 0 chr4 107942939 107943020 -47687100 - B4A SINE B4 -196 96 9 1 1408 428 48 0 46 chr4 107943176 107943241 -47686879 + B1_Mus2 SINE Alu 2 63 -84 1 1408 1513 188 83 11 chr4 107943279 107943628 -47686492 - ORR1D1 LTR MaLR 0 374 1 1 1408 457 320 58 42 chr4 107943805 107943994 -47686126 + ID_B1 SINE B4 10 201 -23 1 1408 1144 68 0 33 chr4 107944039 107944191 -47685929 + B1_Mus2 SINE Alu 1 147 0 1 1408 860 213 41 0 chr4 107944352 107944549 -47685571 + B3 SINE B2 6 210 -6 1 1408 213 259 37 0 chr4 107945109 107945163 -47684957 - B1_Mur4 SINE Alu -84 66 11 1 1408 2149 175 53 8 chr4 107945223 107945621 -47684499 + MTC LTR MaLR 5 420 -1 1 1408 227 93 70 0 chr4 107945723 107945766 -47684354 + PB1D9 SINE Alu 2 47 -73 1 1408 1091 83 7 0 chr4 107945799 107945944 -47684176 + B1_Mus1 SINE Alu 3 148 0 1 1408 384 255 61 10 chr4 107945986 107946085 -47684035 + ID_B1 SINE B4 121 224 0 1 1408 216 242 81 0 chr4 107946174 107946236 -47683884 - PB1D10 SINE Alu -1 116 50 1 1408 822 110 59 0 chr4 107947062 107947198 -47682922 + B1_Mus1 SINE Alu 5 148 0 1 1408 600 274 100 122 chr4 107947286 107947647 -47682473 - MTE2a LTR MaLR -16 363 11 1 1408 226 318 67 22 chr4 107947647 107947737 -47682383 - L1MEd LINE L1 -5753 366 273 1 1408 795 176 44 0 chr4 107947852 107947988 -47682132 + B1_Mur3 SINE Alu 1 142 -7 1 1408 856 120 7 40 chr4 107948071 107948109 -47682011 - ORR1C2 LTR MaLR -1 383 350 1 1408 1388 66 27 21 chr4 107948109 107948295 -47681825 + B2_Mm2 SINE B2 1 187 -8 1 1408 225 0 0 0 chr4 107948295 107948320 -47681800 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1408 856 128 7 41 chr4 107948320 107948446 -47681674 - ORR1C2 LTR MaLR -35 349 219 1 1408 388 281 132 0 chr4 107948502 107948623 -47681497 + RSINE1 SINE B4 2 138 -27 1 1408 699 251 109 5 chr4 107948717 107948909 -47681211 - B3 SINE B2 -3 213 2 1 1408 261 0 0 0 chr4 107948950 107948979 -47681141 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 1408 310 154 45 30 chr4 107948982 107949049 -47681071 - B3A SINE B2 -61 137 70 1 1408 25 0 0 0 chr4 107949091 107949116 -47681004 + AT_rich Low_complexity Low_complexity 1 25 0 1 1408 327 253 119 81 chr4 107949122 107949307 -47680813 - B3A SINE B2 -5 193 2 1 1408 204 246 18 0 chr4 107949533 107949590 -47680530 + (CATA)n Simple_repeat Simple_repeat 1 58 0 1 1408 322 335 39 0 chr4 107949632 107949787 -47680333 + MIR SINE MIR 102 262 0 1 1408 186 355 118 0 chr4 107949788 107949898 -47680222 + L2a LINE L2 3304 3426 0 1 1408 440 133 563 0 chr4 107950304 107950439 -47679681 + B3 SINE B2 2 212 -4 1 1408 417 208 84 9 chr4 107950524 107950631 -47679489 - PB1D9 SINE Alu -2 118 4 1 1408 272 193 0 81 chr4 107950635 107950697 -47679423 - ID4 SINE ID -23 60 4 1 1408 291 243 57 0 chr4 107951233 107951245 -47678875 + B4A SINE B4 71 86 -206 1 1408 484 279 29 0 chr4 107951245 107951381 -47678739 + B1F1 SINE Alu 1 140 -9 1 1408 288 0 0 0 chr4 107951381 107951413 -47678707 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1408 278 306 0 0 chr4 107951426 107951498 -47678622 + ID4 SINE ID 12 83 0 1 1408 397 241 0 12 chr4 107951515 107951595 -47678525 + ID2 SINE ID 1 79 -4 1 1408 1299 94 10 0 chr4 107951783 107951975 -47678145 + B2_Mm2 SINE B2 2 195 0 1 1408 335 267 33 0 chr4 107951991 107952081 -47678039 + PB1D10 SINE Alu 23 115 -2 1 1408 1317 72 55 6 chr4 107952185 107952367 -47677753 + B2_Mm1a SINE B2 2 192 -1 1 1408 308 281 97 0 chr4 107952382 107952496 -47677624 + PB1 SINE Alu 1 125 -2 1 1408 231 365 39 0 chr4 107952544 107952648 -47677472 + B3A SINE B2 89 196 -2 1 1408 26 0 0 0 chr4 107952699 107952725 -47677395 + AT_rich Low_complexity Low_complexity 1 26 0 1 1408 1402 78 10 16 chr4 107952750 107952944 -47677176 + B2_Mm2 SINE B2 2 194 -1 1 1408 1167 130 0 16 chr4 107953009 107953196 -47676924 + B2_Mm2 SINE B2 2 185 -10 1 1408 1441 62 17 0 chr4 107953348 107953527 -47676593 + B2_Mm2 SINE B2 1 182 -13 1 1408 3338 26 10 3 chr4 107953527 107953714 -47676406 + MTA_Mm LTR MaLR 5 192 -204 1 1408 1643 37 0 0 chr4 107953714 107953905 -47676215 + B2_Mm1a SINE B2 2 192 -1 1 1408 3338 26 10 3 chr4 107953905 107954106 -47676014 + MTA_Mm LTR MaLR 193 396 0 1 1408 796 172 4 352 chr4 107954573 107954785 -47675335 + RMER19B LTR ERVK 1 143 -759 1 1408 1168 68 0 0 chr4 107954785 107954931 -47675189 + B1_Mus2 SINE Alu 2 147 0 1 1408 796 194 3 296 chr4 107954931 107955246 -47674874 + RMER19B LTR ERVK 144 310 -592 1 1408 389 198 47 0 chr4 107955667 107955746 -47674374 + ID_B1 SINE B4 103 185 -39 1 1408 247 61 224 0 chr4 107955746 107955795 -47674325 + B1_Mus1 SINE Alu 1 60 -88 1 1408 583 256 7 28 chr4 107955857 107955998 -47674122 + RSINE1 SINE B4 6 143 -22 1 1408 995 111 31 6 chr4 107956336 107956499 -47673621 + B2_Mm1t SINE B2 1 167 -26 1 1408 297 182 0 0 chr4 107956583 107956638 -47673482 + B2_Mm2 SINE B2 47 101 -94 1 1408 3069 12 0 0 chr4 107956678 107957015 -47673105 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1408 56663 20 17 7 chr4 107957015 107963421 -47666699 + IAPEz-int LTR ERVK 8 6481 0 1 1408 3069 12 0 0 chr4 107963421 107963758 -47666362 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1408 750 298 47 12 chr4 107963774 107964032 -47666088 - B4A SINE B4 -23 269 3 1 1408 645 80 0 0 chr4 107964142 107964230 -47665890 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1408 544 333 25 87 chr4 107964232 107964317 -47665803 - B4A SINE B4 -24 268 197 1 1408 794 188 20 20 chr4 107964317 107964464 -47665656 + B1_Mus1 SINE Alu 2 148 0 1 1408 544 333 25 87 chr4 107964464 107964664 -47665456 - B4A SINE B4 -96 196 1 1 1408 549 244 14 36 chr4 107964787 107964927 -47665193 - B1_Mur2 SINE Alu -6 143 7 1 1408 230 293 171 0 chr4 107964960 107965042 -47665078 - B4A SINE B4 -182 110 15 1 1408 452 264 62 8 chr4 107965097 107965227 -47664893 - RSINE1 SINE B4 -17 148 12 1 1408 271 169 0 33 chr4 107965245 107965306 -47664814 - B1F1 SINE Alu -10 139 81 1 1408 309 333 0 0 chr4 107965290 107965371 -47664749 - RSINE1 SINE B4 -82 83 3 1 1408 278 351 25 74 chr4 107965454 107965617 -47664503 - B4A SINE B4 -61 231 77 1 1408 254 172 0 17 chr4 107965621 107965663 -47664457 + polypurine Low_complexity Low_complexity 2 42 0 1 1408 1243 83 83 0 chr4 107965663 107965843 -47664277 + B2_Mm2 SINE B2 1 195 0 1 1408 254 172 0 17 chr4 107965843 107965859 -47664261 + polypurine Low_complexity Low_complexity 43 58 0 1 1408 578 299 25 0 chr4 107965863 107966020 -47664100 + B3A SINE B2 1 161 -37 1 1408 1199 48 0 7 chr4 107966086 107966233 -47663887 + B1_Mus2 SINE Alu 2 147 0 1 1408 294 181 71 24 chr4 107966243 107966328 -47663792 + PB1D9 SINE Alu 1 89 -31 1 1408 482 174 62 35 chr4 107966551 107966664 -47663456 - B1_Mur1 SINE Alu -2 147 32 1 1408 305 213 13 26 chr4 107966799 107966876 -47663244 - ID4_ SINE ID 0 83 8 1 1408 287 281 158 0 chr4 107966886 107966968 -47663152 - PB1D10 SINE Alu -6 111 17 1 1408 344 213 67 0 chr4 107967229 107967304 -47662816 + RSINE1 SINE B4 55 134 -31 1 1408 486 211 35 9 chr4 107967482 107967597 -47662523 + PB1 SINE Alu 3 120 -7 1 1408 330 253 72 0 chr4 107967772 107967855 -47662265 - ID_B1 SINE B4 -1 223 135 1 1408 321 226 47 11 chr4 107968140 107968250 -47661870 - MTEb LTR MaLR 0 379 262 1 1408 493 220 138 122 chr4 107968434 107968615 -47661505 - B3A SINE B2 -8 190 7 1 1408 201 246 0 44 chr4 107968651 107968719 -47661401 + C-rich Low_complexity Low_complexity 6 70 0 1 1408 634 243 68 47 chr4 107968728 107968918 -47661202 - B3A SINE B2 0 198 5 1 1408 749 169 20 53 chr4 107968922 107969072 -47661048 - B1_Mur1 SINE Alu 0 149 5 1 1408 862 0 0 0 chr4 107969147 107969252 -47660868 - B1_Mm SINE Alu -18 129 25 1 1408 228 333 29 19 chr4 107969840 107969944 -47660176 + MER5A DNA MER1_type 23 127 -62 1 1408 618 289 32 36 chr4 107970233 107970452 -47659668 + MLT1A0 LTR MaLR 1 218 -147 1 1408 254 256 153 24 chr4 107970452 107970576 -47659544 + B1F1 SINE Alu 5 144 -5 1 1408 566 319 41 0 chr4 107970580 107970658 -47659462 + ID SINE ID 1 85 -139 1 1408 276 364 45 0 chr4 107970658 107970768 -47659352 + B1_Mus2 SINE Alu 1 115 -32 1 1408 460 326 8 8 chr4 107970807 107970937 -47659183 + B4A SINE B4 93 222 -70 1 1408 822 222 6 12 chr4 107970947 107971120 -47659000 + B3 SINE B2 20 191 -25 1 1408 189 0 0 0 chr4 107971160 107971181 -47658939 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1408 246 383 0 0 chr4 107971195 107971289 -47658831 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1408 395 149 0 13 chr4 107971289 107971364 -47658756 + GA-rich Low_complexity Low_complexity 2 75 0 1 1408 410 264 76 17 chr4 107971365 107971512 -47658608 + MLT1A0 LTR MaLR 227 408 0 1 1408 467 165 97 44 chr4 107971597 107971711 -47658409 - B1_Mus2 SINE Alu -6 141 22 1 1408 224 303 71 32 chr4 107971612 107971738 -47658382 - ID_B1 SINE B4 -15 209 79 1 1408 261 245 18 125 chr4 107973698 107973866 -47656254 + (CCCCG)n Simple_repeat Simple_repeat 1 150 0 1 1408 1073 69 74 6 chr4 107974242 107974417 -47655703 - B2_Mm2 SINE B2 0 195 9 1 1408 268 333 74 35 chr4 107974464 107974666 -47655454 + L2 LINE L2 1397 1606 -1813 1 1408 242 125 125 0 chr4 107974666 107974714 -47655406 - B1F SINE Alu -29 120 67 1 1408 603 168 0 0 chr4 107974727 107974840 -47655280 + ORR1B1 LTR MaLR 1 113 -281 1 1408 229 219 131 24 chr4 107974895 107974979 -47655141 - L1MB3 LINE L1 -35 6148 6056 1 1408 277 320 0 0 chr4 107975006 107975081 -47655039 - ID4 SINE ID -4 79 5 1 1408 229 308 0 0 chr4 107975185 107975250 -47654870 - tRNA-Ala-GCA tRNA tRNA -8 67 3 1 1408 1585 140 67 84 chr4 107975308 107975490 -47654630 + RLTR11B LTR ERVK 8 201 -252 1 1408 741 79 24 0 chr4 107975490 107975617 -47654503 + (GA)n Simple_repeat Simple_repeat 2 131 0 1 1408 1585 140 67 84 chr4 107975617 107975654 -47654466 + RLTR11B LTR ERVK 202 231 -222 1 1408 1237 112 21 5 chr4 107975654 107975842 -47654278 + B2_Mm2 SINE B2 1 191 -4 1 1408 1585 165 359 59 chr4 107975842 107976018 -47654102 + RLTR11B LTR ERVK 232 453 0 1 1408 477 0 0 0 chr4 107976029 107976082 -47654038 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1408 222 125 75 0 chr4 107976117 107976157 -47653963 - ID4 SINE ID -39 44 2 1 1408 529 246 100 0 chr4 107976168 107976298 -47653822 - B1_Mur1 SINE Alu 0 149 7 1 1408 324 0 0 0 chr4 107976392 107976428 -47653692 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1408 374 288 104 35 chr4 107976432 107976576 -47653544 - RSINE1 SINE B4 -9 156 3 1 1408 669 183 208 67 chr4 107976586 107976826 -47653294 - RLTR25B LTR ERVK -14 1014 741 1 1408 270 53 0 0 chr4 107977022 107977039 -47653081 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1408 1242 48 0 0 chr4 107977039 107977186 -47652934 - B1_Mus2 SINE Alu 0 147 1 1 1408 270 53 0 0 chr4 107977186 107977206 -47652914 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1408 1881 155 131 13 chr4 107977229 107977430 -47652690 - RLTR25B LTR ERVK -174 854 629 1 1408 1345 102 37 0 chr4 107977430 107977617 -47652503 + B2_Mm2 SINE B2 1 194 -1 1 1408 1881 171 175 58 chr4 107977617 107978126 -47651994 - RLTR25B LTR ERVK -400 628 1 1 1408 586 295 0 0 chr4 107978197 107978336 -47651784 + B1_Mur1 SINE Alu 2 140 -9 1 1408 355 174 198 30 chr4 107978337 107978438 -47651682 + PB1D9 SINE Alu 2 119 -1 1 1408 612 164 16 54 chr4 107978607 107978736 -47651384 + B1_Mur3 SINE Alu 26 149 0 1 1408 1617 47 0 15 chr4 107978781 107978977 -47651143 + B2_Mm1a SINE B2 1 193 0 1 1408 1505 43 0 42 chr4 107979161 107979354 -47650766 - B2_Mm1t SINE B2 -7 186 2 1 1408 296 296 68 0 chr4 107979398 107979486 -47650634 + B3A SINE B2 1 94 -104 1 1408 389 277 38 15 chr4 107979497 107979629 -47650491 + B3A SINE B2 64 198 0 1 1408 305 266 25 0 chr4 107979695 107979774 -47650346 + B1_Mus2 SINE Alu 35 115 -32 1 1408 1000 135 142 5 chr4 107979704 107979866 -47650254 + RLTR25B LTR ERVK 450 698 -405 1 1408 1307 112 37 0 chr4 107979866 107980053 -47650067 - B2_Mm2 SINE B2 -1 194 1 1 1408 1000 162 117 15 chr4 107980053 107980151 -47649969 + RLTR25B LTR ERVK 625 796 -307 1 1408 593 109 19 47 chr4 107980102 107980208 -47649912 - RLTR14 LTR ERV1 -35 347 245 1 1408 664 131 0 0 chr4 107980277 107980384 -47649736 - B2_Mm2 SINE B2 -88 107 1 1 1408 1133 71 0 0 chr4 107980396 107980537 -47649583 - B1_Mus1 SINE Alu -6 142 2 1 1408 1267 132 34 67 chr4 107980537 107980701 -47649419 - RLTR14 LTR ERV1 -123 259 90 1 1408 3824 53 45 35 chr4 107980701 107981208 -47648912 + RLTR1B LTR ERV1 1 512 0 1 1408 1267 132 34 67 chr4 107981208 107981311 -47648809 - RLTR14 LTR ERV1 -293 89 1 1 1408 719 229 26 7 chr4 107981509 107981663 -47648457 + RSINE1 SINE B4 3 159 -6 1 1408 211 406 0 0 chr4 107981685 107981749 -47648371 + B4A SINE B4 83 146 -146 1 1408 449 271 9 0 chr4 107981697 107981804 -47648316 + PB1D10 SINE Alu 10 117 0 1 1408 614 222 19 65 chr4 107981811 107981965 -47648155 + B1_Mur3 SINE Alu 3 149 0 1 1408 397 281 70 0 chr4 107981967 107982095 -47648025 + ID_B1 SINE B4 86 222 -2 1 1408 2407 123 19 8 chr4 107982422 107982800 -47647320 + RLTR14 LTR ERV1 1 382 0 1 1408 1931 161 69 14 chr4 107983109 107983456 -47646664 - ORR1B2 LTR MaLR 0 367 2 1 1408 1194 54 0 0 chr4 107984289 107984436 -47645684 + B1_Mm SINE Alu 1 147 0 1 1408 1321 87 38 0 chr4 107984456 107984639 -47645481 + B2_Mm2 SINE B2 2 191 -4 1 1408 1185 61 0 7 chr4 107984642 107984790 -47645330 + B1_Mus2 SINE Alu 1 147 0 1 1408 497 252 37 0 chr4 107984833 107984940 -47645180 + B1F1 SINE Alu 18 128 -21 1 1408 644 180 81 16 chr4 107984940 107985064 -47645056 + B1_Mur3 SINE Alu 3 134 -15 1 1408 1943 99 25 28 chr4 107985067 107985389 -47644731 - ORR1A4 LTR MaLR -8 321 1 1 1408 491 276 0 75 chr4 107985806 107985939 -47644181 + RSINE1 SINE B4 17 139 -26 1 1408 645 189 16 24 chr4 107986263 107986388 -47643732 + B1_Mur1 SINE Alu 18 141 -8 1 1408 240 214 0 0 chr4 107986388 107986444 -47643676 + (CAT)n Simple_repeat Simple_repeat 1 56 0 1 1408 409 250 97 0 chr4 107986856 107986980 -47643140 + B1F SINE Alu 5 140 -9 1 1408 534 16 0 0 chr4 107986980 107987043 -47643077 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1408 282 100 140 0 chr4 107987297 107987347 -47642773 + B2_Mm2 SINE B2 125 181 -14 1 1408 246 156 0 0 chr4 107987355 107987400 -47642720 + CT-rich Low_complexity Low_complexity 4 48 0 1 1408 1172 75 0 0 chr4 107987400 107987547 -47642573 - B1_Mus1 SINE Alu 0 148 2 1 1408 26 50 0 0 chr4 107987547 107987587 -47642533 + AT_rich Low_complexity Low_complexity 1 40 0 1 1408 744 197 7 26 chr4 107987668 107987819 -47642301 - B1_Mur2 SINE Alu -1 148 1 1 1408 243 0 0 0 chr4 107987844 107987871 -47642249 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1408 470 270 97 6 chr4 107987880 107988055 -47642065 - B3A SINE B2 -7 191 1 1 1408 1258 40 0 0 chr4 107988394 107988542 -47641578 + B1_Mus1 SINE Alu 1 148 0 1 1408 192 40 0 0 chr4 107988545 107988570 -47641550 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1408 2127 137 152 8 chr4 107988648 107989016 -47641104 - MTC LTR MaLR 0 421 1 1 1408 224 222 122 27 chr4 107989016 107989090 -47641030 + PB1 SINE Alu 47 127 0 1 1408 272 348 34 25 chr4 107989185 107989199 -47640921 + B4 SINE B4 77 195 -97 1 1408 555 221 0 0 chr4 107989199 107989303 -47640817 + B1_Mur1 SINE Alu 3 106 -43 1 1408 378 252 82 104 chr4 107989883 107990065 -47640055 - B3A SINE B2 -16 182 5 1 1408 368 226 40 31 chr4 107990073 107990187 -47639933 - PB1D9 SINE Alu -1 119 1 1 1408 265 262 119 0 chr4 107990187 107990271 -47639849 - U6 snRNA snRNA 0 107 14 1 1408 218 319 14 28 chr4 107990647 107990718 -47639402 - L2b LINE L2 -64 3311 3242 1 1408 306 273 10 39 chr4 107990994 107991097 -47639023 + B3A SINE B2 38 137 -61 1 1408 369 129 0 0 chr4 107991109 107991179 -47638941 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1408 531 191 80 44 chr4 107991250 107991387 -47638733 + B1F2 SINE Alu 7 148 -1 1 1408 211 368 0 0 chr4 107991497 107991584 -47638536 - PB1D10 SINE Alu -28 89 3 1 1408 879 170 14 0 chr4 107991836 107991983 -47638137 - B1_Mur3 SINE Alu 0 149 1 1 1408 234 0 0 0 chr4 107992172 107992198 -47637922 + (G)n Simple_repeat Simple_repeat 1 26 0 1 1408 204 339 0 0 chr4 107992199 107992264 -47637856 + L2a LINE L2 3325 3389 -37 1 1408 189 0 0 0 chr4 107992269 107992290 -47637830 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1408 316 136 17 17 chr4 107992290 107992350 -47637770 - B1_Mur1 SINE Alu -13 136 77 1 1408 647 193 117 0 chr4 107992539 107992710 -47637410 - B3 SINE B2 -24 192 2 1 1408 348 250 196 0 chr4 107992720 107992832 -47637288 - ID_B1 SINE B4 -6 218 85 1 1408 240 229 0 0 chr4 107992857 107992905 -47637215 + PB1D10 SINE Alu 59 106 -11 1 1408 385 163 11 23 chr4 107992930 107993018 -47637102 + RCHARR1 DNA MER1_type 840 926 -48 1 1408 183 42 0 0 chr4 107993033 107993057 -47637063 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1408 281 238 138 0 chr4 107993772 107993852 -47636268 + B1F2 SINE Alu 3 93 -56 1 1408 398 254 17 42 chr4 107993870 107993989 -47636131 + PB1D9 SINE Alu 4 119 -1 1 1408 1441 84 5 0 chr4 107994053 107994244 -47635876 + B2_Mm1a SINE B2 1 192 -1 1 1408 734 239 18 0 chr4 107994287 107994454 -47635666 + B3 SINE B2 41 210 -6 1 1408 255 161 0 0 chr4 107994543 107994599 -47635521 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1408 1182 75 0 0 chr4 107994648 107994795 -47635325 + B1_Mus2 SINE Alu 1 147 0 1 1408 1194 174 56 44 chr4 107995605 107995697 -47634423 + MTC LTR MaLR 3 84 -337 1 1408 1405 77 0 58 chr4 107995697 107995904 -47634216 + B2_Mm2 SINE B2 1 195 0 1 1408 1194 174 56 44 chr4 107995904 107996063 -47634057 + MTC LTR MaLR 85 257 -164 1 1408 391 103 0 0 chr4 107996059 107996117 -47634003 + MTC LTR MaLR 361 418 -1 1 1408 775 237 66 15 chr4 107996179 107996376 -47633744 + B3 SINE B2 5 211 -5 1 1408 850 159 14 0 chr4 107996393 107996538 -47633582 + B1_Mus1 SINE Alu 1 147 -1 1 1408 192 179 0 0 chr4 107996552 107996591 -47633529 + GA-rich Low_complexity Low_complexity 3 41 0 1 1408 1317 73 0 0 chr4 107996594 107996772 -47633348 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1 1408 537 263 20 96 chr4 107996816 107997014 -47633106 - B3A SINE B2 -15 183 1 1 1408 1649 16 11 0 chr4 107997073 107997259 -47632861 + B2_Mm1t SINE B2 1 188 -5 1 1408 863 178 194 0 chr4 107997276 107997456 -47632664 - B3 SINE B2 -1 215 1 1 1408 351 287 133 0 chr4 107997483 107997633 -47632487 - ID_B1 SINE B4 -53 171 2 1 1408 1516 63 11 0 chr4 107997665 107997856 -47632264 + B2_Mm1t SINE B2 1 193 0 1 1408 1697 21 5 0 chr4 107998093 107998284 -47631836 - B2_Mm1a SINE B2 0 193 2 1 1408 2175 187 84 13 chr4 107998307 107998773 -47631347 + RLTR19 LTR ERVK 1 499 0 1 1408 361 241 100 33 chr4 107998780 107998870 -47631250 - PB1D10 SINE Alu -21 96 1 1 1408 635 162 26 99 chr4 107998897 107999048 -47631072 + B1_Mus2 SINE Alu 1 140 -7 1 1408 279 0 0 0 chr4 107999049 107999080 -47631040 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1408 640 23 11 11 chr4 107999080 107999167 -47630953 + (GAA)n Simple_repeat Simple_repeat 3 89 0 1 1408 696 145 0 0 chr4 107999176 107999293 -47630827 + (GGGAA)n Simple_repeat Simple_repeat 5 121 0 1 1408 555 243 129 12 chr4 107999299 107999470 -47630650 - ID_B1 SINE B4 -31 193 3 1 1408 30 0 0 0 chr4 107999470 107999500 -47630620 + AT_rich Low_complexity Low_complexity 1 30 0 1 1408 700 88 88 0 chr4 107999536 107999649 -47630471 - RLTR23 LTR ERV1 -298 132 10 1 1408 500 219 8 116 chr4 108001207 108001336 -47628784 + PB1 SINE Alu 1 125 -2 1 1408 252 326 118 22 chr4 108001220 108001355 -47628765 + B4A SINE B4 95 242 -50 2 1408 301 205 69 46 chr4 108001385 108001472 -47628648 + B3A SINE B2 109 197 -1 3 1408 485 213 83 7 chr4 108001479 108001607 -47628513 - B1_Mur1 SINE Alu -1 148 17 4 1408 497 242 129 3 chr4 108001626 108001756 -47628364 - B1_Mus1 SINE Alu -2 147 2 5 1408 27 0 0 0 chr4 108001758 108001785 -47628335 + AT_rich Low_complexity Low_complexity 1 27 0 6 1408 1388 69 6 0 chr4 108001961 108002135 -47627985 - B2_Mm1a SINE B2 -18 175 1 7 1408 189 286 0 0 chr4 108002243 108002292 -47627828 - L2c LINE L2 -59 3328 3280 8 1408 261 0 0 0 chr4 108002368 108002397 -47627723 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1408 1120 72 0 0 chr4 108002397 108002536 -47627584 - B1_Mus2 SINE Alu -8 139 1 1 1408 245 312 0 12 chr4 108002741 108002822 -47627298 - ID2 SINE ID -3 80 1 1 1408 667 264 70 28 chr4 108002991 108003205 -47626915 + ID_B1 SINE B4 2 224 0 1 21 1029 17 0 0 chr4 108003297 108003417 -47626703 - B1_Mus1 SINE Alu 0 148 29 1 1409 281 209 0 29 chr4 108003525 108003594 -47626526 - ID4_ SINE ID -16 67 1 1 1409 284 337 33 0 chr4 108004081 108004173 -47625947 - ID_B1 SINE B4 -49 175 81 1 1409 432 0 0 0 chr4 108004252 108004300 -47625820 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1409 1254 102 48 0 chr4 108005108 108005123 -47624997 - B2_Mm2 SINE B2 0 195 176 1 1409 1104 95 0 33 chr4 108005123 108005276 -47624844 - B1_Mus1 SINE Alu 0 148 1 1 1409 1254 102 48 0 chr4 108005276 108005446 -47624674 - B2_Mm2 SINE B2 -20 175 2 1 1409 1150 95 0 0 chr4 108005460 108005607 -47624513 - B1_Mus2 SINE Alu 0 147 1 1 1409 1411 60 44 0 chr4 108005614 108005796 -47624324 - B2_Mm1a SINE B2 -3 190 1 2 1409 408 265 20 20 chr4 108005885 108005985 -47624135 - PB1D10 SINE Alu -17 100 1 2 1409 2011 131 36 174 chr4 108006011 108006163 -47623957 + MTC LTR MaLR 3 120 -301 2 1409 1057 110 0 40 chr4 108006163 108006315 -47623805 - B1_Mus2 SINE Alu 0 147 2 2 1409 2011 131 36 174 chr4 108006315 108006332 -47623788 + MTC LTR MaLR 121 121 -300 2 1409 690 19 408 0 chr4 108006332 108006435 -47623685 - B1_Mm SINE Alu 0 147 3 2 1409 2011 131 36 174 chr4 108006435 108006735 -47623385 + MTC LTR MaLR 121 408 -13 2 1409 896 143 111 6 chr4 108006735 108006897 -47623223 - RMER10B LTR ERVL 0 398 220 2 1409 917 57 82 0 chr4 108006883 108007005 -47623115 + B1_Mus2 SINE Alu 6 137 -10 2 1409 276 30 0 0 chr4 108007019 108007052 -47623068 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1409 1396 139 38 8 chr4 108007052 108007291 -47622829 - RMER10B LTR ERVL -152 246 1 2 1409 212 200 67 0 chr4 108007430 108007475 -47622645 + MIR SINE MIR 113 160 -102 2 1409 376 184 0 20 chr4 108007578 108007678 -47622442 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 2 1409 1173 74 0 7 chr4 108007762 108007911 -47622209 + B1_Mus1 SINE Alu 1 148 0 3 1409 743 161 8 0 chr4 108008040 108008158 -47621962 + PB1D9 SINE Alu 1 119 -1 3 1409 736 211 193 6 chr4 108008357 108008538 -47621582 + B3 SINE B2 2 216 0 3 1409 360 259 169 62 chr4 108008734 108008911 -47621209 - MLT1F LTR MaLR -174 374 179 3 1409 657 243 149 6 chr4 108008925 108009099 -47621021 + B3 SINE B2 14 212 -4 3 1409 331 269 88 44 chr4 108009133 108009246 -47620874 + B1_Mur2 SINE Alu 27 144 -5 3 1409 1514 28 39 6 chr4 108009270 108009448 -47620672 - B2_Mm2 SINE B2 -10 185 2 3 1409 21 57 0 0 chr4 108009448 108009483 -47620637 + AT_rich Low_complexity Low_complexity 1 35 0 3 1409 217 196 17 51 chr4 108009577 108009636 -47620484 + PB1D10 SINE Alu 60 116 -1 3 1409 261 315 83 0 chr4 108009679 108009787 -47620333 - PB1D10 SINE Alu 0 117 1 3 1409 455 194 55 55 chr4 108009807 108009824 -47620296 - PB1D9 SINE Alu 0 120 108 4 1409 289 43 21 21 chr4 108009824 108009872 -47620248 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1409 455 194 55 55 chr4 108009872 108009963 -47620157 - PB1D9 SINE Alu -13 107 12 4 1409 288 295 20 31 chr4 108009883 108009981 -47620139 - B4A SINE B4 -118 174 78 4 1409 848 281 100 14 chr4 108009997 108010286 -47619834 - MER2 DNA MER2_type -3 342 29 4 1409 327 206 14 14 chr4 108010615 108010689 -47619431 - ID4_ SINE ID -9 74 1 4 1409 231 114 0 0 chr4 108011848 108011883 -47618237 + (TCCCC)n Simple_repeat Simple_repeat 5 39 0 4 1409 245 280 83 9 chr4 108011889 108011997 -47618123 - PB1D10 SINE Alu 0 117 2 4 1409 333 268 24 35 chr4 108012489 108012574 -47617546 + RSINE1 SINE B4 46 129 -36 4 1409 316 127 118 66 chr4 108012664 108012740 -47617380 + B1_Mur2 SINE Alu 70 149 0 4 1409 551 274 155 10 chr4 108012843 108013134 -47616986 + L1MC1 LINE L1 5489 5821 -512 4 1409 346 260 47 19 chr4 108013221 108013327 -47616793 + PB1D9 SINE Alu 12 120 0 5 1409 796 237 72 0 chr4 108013424 108013618 -47616502 + B3 SINE B2 3 210 -6 5 1409 1157 41 7 14 chr4 108013658 108013806 -47616314 - B1_Mus2 SINE Alu 0 147 1 5 1409 232 272 78 17 chr4 108013816 108013932 -47616188 + L1MC1 LINE L1 6025 6147 -186 4 1409 380 279 203 8 chr4 108014362 108014608 -47615512 + L1MB2 LINE L1 5620 5913 -258 5 1409 629 277 14 0 chr4 108014863 108015004 -47615116 - B1_Mur1 SINE Alu -5 144 2 5 1409 856 148 0 34 chr4 108015020 108015167 -47614953 - B1_Mur4 SINE Alu 0 150 9 5 1409 432 282 31 69 chr4 108015029 108015189 -47614931 - ID_B1 SINE B4 -7 217 64 5 1409 264 235 0 0 chr4 108015195 108015246 -47614874 + RSINE1 SINE B4 2 52 -113 5 1409 1116 110 0 0 chr4 108015293 108015439 -47614681 + B1_Mur3 SINE Alu 4 149 0 5 1409 455 215 189 65 chr4 108015484 108015653 -47614467 - B3 SINE B2 0 216 27 5 1409 270 0 0 0 chr4 108015653 108015683 -47614437 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1409 393 139 99 5 chr4 108015733 108015823 -47614297 - B1_Mur4 SINE Alu -11 139 1 6 1409 771 272 35 0 chr4 108015898 108016071 -47614049 + B3A SINE B2 10 188 -10 6 1409 1411 69 16 0 chr4 108016081 108016270 -47613850 + B2_Mm1t SINE B2 2 193 0 6 1409 914 172 47 21 chr4 108016275 108016465 -47613655 - B2_Mm2 SINE B2 0 195 1 6 1409 639 130 99 27 chr4 108016498 108016609 -47613511 + B1_Mur4 SINE Alu 32 150 0 6 1409 872 253 42 17 chr4 108016631 108016836 -47613284 + B3 SINE B2 8 192 -3 6 1409 544 144 11 11 chr4 108016907 108016998 -47613122 + B1_Mur4 SINE Alu 60 150 0 6 1409 497 197 197 0 chr4 108017017 108017139 -47612981 + B1_Mus2 SINE Alu 1 146 -1 6 1409 328 299 93 0 chr4 108017353 108017460 -47612660 + PB1D10 SINE Alu 1 117 0 6 1409 21 0 0 0 chr4 108017460 108017481 -47612639 + AT_rich Low_complexity Low_complexity 1 21 0 7 1409 353 296 124 72 chr4 108017929 108018082 -47612038 + RSINE1 SINE B4 2 162 -3 7 1409 259 296 62 113 chr4 108018082 108018123 -47611997 + B2_Mm1a SINE B2 1 184 -9 7 1409 180 288 40 14 chr4 108018239 108018313 -47611807 + MIR SINE MIR 48 123 -139 7 1409 558 179 0 31 chr4 108019123 108019221 -47610899 - B1_Mur4 SINE Alu -55 95 1 7 1409 583 211 57 8 chr4 108019270 108019394 -47610726 - ORR1D1 LTR MaLR -244 130 1 7 1409 619 167 175 0 chr4 108019511 108019637 -47610483 + B1_Mur4 SINE Alu 3 150 0 7 1409 1216 61 0 0 chr4 108019657 108019804 -47610316 + B1_Mm SINE Alu 1 147 0 7 1409 761 295 29 22 chr4 108019859 108020136 -47609984 + B4A SINE B4 5 283 -9 7 1409 265 249 205 10 chr4 108020463 108020611 -47609509 - MIRb SINE MIR -63 199 50 7 1409 1292 27 0 0 chr4 108020612 108020759 -47609361 + B1_Mm SINE Alu 1 147 0 8 1409 211 305 40 50 chr4 108021248 108021348 -47608772 - MIR SINE MIR -118 144 46 8 1409 293 289 162 49 chr4 108021466 108021500 -47608620 + ID_B1 SINE B4 67 224 0 8 1409 339 215 32 19 chr4 108021500 108021608 -47608512 + B1F1 SINE Alu 17 149 0 8 1409 1214 159 37 0 chr4 108021873 108022087 -47608033 + URR1B DNA MER1_type 4 225 0 8 1409 739 159 140 17 chr4 108022299 108022478 -47607642 + MTD LTR MaLR 219 419 0 8 1409 262 148 0 23 chr4 108022478 108022526 -47607594 + MER45A DNA Tip100 128 174 -4 8 1409 475 318 29 35 chr4 108023009 108023216 -47606904 + MIRb SINE MIR 50 259 -3 8 1409 211 299 133 53 chr4 108023211 108023324 -47606796 - MIRb SINE MIR -68 200 79 8 1409 615 196 243 23 chr4 108024018 108024195 -47605925 + ID_B1 SINE B4 2 217 -7 8 1409 1096 83 14 0 chr4 108024377 108024521 -47605599 - B1_Mm SINE Alu 0 147 2 9 1409 231 247 178 11 chr4 108024651 108024741 -47605379 - MamRep137 DNA TcMar? -78 366 262 9 1409 609 210 161 0 chr4 108024900 108025024 -47605096 + ID_B1 SINE B4 81 224 0 9 1409 841 184 0 33 chr4 108025043 108025195 -47604925 + B1_Mus2 SINE Alu 1 147 0 9 1409 1721 26 0 0 chr4 108025220 108025413 -47604707 + B2_Mm1a SINE B2 1 193 0 9 1409 273 98 0 0 chr4 108025485 108025526 -47604594 + (TC)n Simple_repeat Simple_repeat 2 42 0 9 1409 222 37 0 0 chr4 108025608 108025635 -47604485 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1409 1051 196 55 5 chr4 108025648 108025848 -47604272 + B3 SINE B2 5 214 -2 9 1409 1092 84 7 0 chr4 108025861 108026003 -47604117 + B1_Mm SINE Alu 5 147 0 9 1409 183 170 0 0 chr4 108026006 108026053 -47604067 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1409 1001 143 200 0 chr4 108026072 108026247 -47603873 + B3 SINE B2 2 211 -5 1 1409 787 177 8 0 chr4 108026286 108026410 -47603710 - RSINE1 SINE B4 -38 127 3 1 1409 1528 58 16 0 chr4 108026449 108026640 -47603480 + B2_Mm2 SINE B2 2 195 0 1 1409 555 210 27 67 chr4 108026641 108026811 -47603309 + B3 SINE B2 31 193 -2 1 1409 390 332 39 52 chr4 108026999 108027231 -47602889 + L4 LINE RTE 1716 1944 -85 1 1409 908 235 15 10 chr4 108027709 108027911 -47602209 + ID_B1 SINE B4 4 206 -18 1 1409 232 288 105 40 chr4 108029509 108029585 -47600535 + MIRm SINE MIR 70 150 -126 1 1409 530 182 131 0 chr4 108029905 108030004 -47600116 - ID_B1 SINE B4 -1 223 112 1 1409 832 282 98 83 chr4 108030149 108030507 -47599613 - MT2A LTR ERVL -117 416 46 1 1409 1232 54 7 0 chr4 108030507 108030654 -47599466 - B1_Mus1 SINE Alu 0 148 1 1 1409 832 282 98 83 chr4 108030654 108030705 -47599415 - MT2A LTR ERVL -488 45 1 1 1409 477 226 190 16 chr4 108031965 108032149 -47597971 - B3 SINE B2 0 216 1 1 1409 944 180 83 21 chr4 108033332 108033525 -47596595 - B3 SINE B2 -1 215 11 1 1409 456 223 61 26 chr4 108033563 108033678 -47596442 + PB1D7 SINE Alu 1 119 -1 1 1409 1298 34 0 0 chr4 108034651 108034798 -47595322 + B1_Mm SINE Alu 1 147 0 1 1409 754 239 67 5 chr4 108034838 108035031 -47595089 - B3 SINE B2 -9 207 3 1 1409 322 232 86 107 chr4 108035725 108035865 -47594255 + MER5A DNA MER1_type 14 150 -39 1 1409 463 257 0 10 chr4 108035882 108035984 -47594136 + PB1D10 SINE Alu 17 117 0 1 1409 240 35 0 0 chr4 108036274 108036303 -47593817 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1409 210 180 0 39 chr4 108036394 108036446 -47593674 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1409 279 0 0 0 chr4 108037185 108037216 -47592904 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1 1409 267 254 274 16 chr4 108037278 108037402 -47592718 - MIR SINE MIR -89 173 18 1 1409 676 282 44 28 chr4 108037445 108037480 -47592640 - B3A SINE B2 -9 189 156 1 1409 420 82 0 0 chr4 108037480 108037541 -47592579 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1 1409 676 282 44 28 chr4 108037541 108037687 -47592433 - B3A SINE B2 -43 155 5 1 1409 635 191 34 17 chr4 108037707 108037824 -47592296 - B1_Mur4 SINE Alu -1 149 31 1 1409 931 225 16 16 chr4 108037837 108038027 -47592093 - B3 SINE B2 0 216 27 1 1409 1204 61 0 0 chr4 108038045 108038192 -47591928 - B1_Mus2 SINE Alu 0 147 1 1 1409 210 118 0 0 chr4 108038221 108038255 -47591865 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1409 253 293 40 0 chr4 108038263 108038338 -47591782 - B3A SINE B2 -19 179 102 1 1409 402 128 99 110 chr4 108038436 108038534 -47591586 + B1_Mur4 SINE Alu 16 112 -37 1 1409 197 65 32 0 chr4 108038609 108038640 -47591480 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 1409 1229 75 6 0 chr4 108038640 108038799 -47591321 - B2_Mm1a SINE B2 -33 160 1 1 1409 333 313 87 0 chr4 108038857 108038972 -47591148 - PB1 SINE Alu -2 125 1 1 1409 928 103 11 0 chr4 108039168 108039342 -47590778 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1409 348 295 0 0 chr4 108039362 108039440 -47590680 - RSINE1 SINE B4 -85 80 3 1 1409 791 164 0 28 chr4 108039470 108039625 -47590495 - B1_Mur4 SINE Alu 0 150 2 1 1409 738 87 0 0 chr4 108039625 108039728 -47590392 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 1 1409 826 191 15 0 chr4 108039729 108039865 -47590255 - B1_Mur4 SINE Alu -12 138 1 1 1409 1183 199 9 9 chr4 108041070 108041283 -47588837 + B3 SINE B2 4 216 0 1 1409 295 316 23 86 chr4 108041303 108041431 -47588689 + PB1D7 SINE Alu 1 120 0 1 1409 349 82 49 0 chr4 108041545 108041606 -47588514 + (CCCCCT)n Simple_repeat Simple_repeat 1 64 0 1 1409 493 160 0 0 chr4 108041660 108041735 -47588385 + B1_Mus1 SINE Alu 5 79 -69 1 1409 336 180 39 128 chr4 108041661 108041763 -47588357 + MT2B2 LTR ERVL 170 262 -322 1 1409 533 246 94 8 chr4 108042291 108042418 -47587702 - B3 SINE B2 -75 141 4 1 1409 716 264 13 151 chr4 108042464 108042781 -47587339 + B4A SINE B4 2 274 -18 1 1409 446 222 0 0 chr4 108042880 108042952 -47587168 + ID4_ SINE ID 2 73 -10 1 1409 240 111 0 0 chr4 108043574 108043619 -47586501 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1409 613 266 20 25 chr4 108043619 108043816 -47586304 + B3A SINE B2 2 197 -1 1 1409 186 345 16 72 chr4 108044246 108044371 -47585749 + MIR3 SINE MIR 58 175 -33 1 1409 212 243 40 79 chr4 108044656 108044667 -47585453 + ID4 SINE ID 1 72 -10 1 1409 232 281 31 0 chr4 108044667 108044731 -47585389 + tRNA-Ala-GCG tRNA tRNA 1 66 -9 1 1409 209 111 28 0 chr4 108044933 108044969 -47585151 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1409 220 331 60 23 chr4 108045018 108045151 -47584969 + MIRc SINE MIR 37 174 -94 1 1409 225 0 0 0 chr4 108045611 108045636 -47584484 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1409 298 270 17 12 chr4 108045821 108045921 -47584199 + MIRc SINE MIR 96 200 -68 1 1409 345 333 111 37 chr4 108046066 108046256 -47583864 - L1M5 LINE L1 -460 5664 5461 1 1409 1121 71 0 6 chr4 108046288 108046445 -47583675 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 1 1409 671 224 116 11 chr4 108046447 108046628 -47583492 - B3 SINE B2 -16 200 1 1 1409 1239 42 0 0 chr4 108046654 108046796 -47583324 + B1_Mus2 SINE Alu 1 142 -5 1 1409 242 56 0 27 chr4 108046814 108046851 -47583269 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1409 474 229 120 14 chr4 108046856 108046998 -47583122 - RSINE1 SINE B4 -6 159 3 1 1409 317 324 48 21 chr4 108047068 108047213 -47582907 - B1F2 SINE Alu 0 149 1 1 1409 477 285 146 0 chr4 108047085 108047222 -47582898 - ID_B1 SINE B4 -1 223 67 1 1409 479 282 8 0 chr4 108047500 108047624 -47582496 + MER82 DNA MER2_type 77 201 -452 1 1409 1069 184 0 11 chr4 108047637 108047818 -47582302 - B3 SINE B2 -3 213 35 1 1409 635 323 63 11 chr4 108047836 108048246 -47581874 + MER82 DNA MER2_type 192 646 -7 1 1409 400 51 186 0 chr4 108048394 108048453 -47581667 - B1_Mm SINE Alu 0 147 78 1 1409 222 200 0 39 chr4 108049556 108049608 -47580512 + T-rich Low_complexity Low_complexity 3 52 0 1 1409 414 224 21 146 chr4 108049611 108049749 -47580371 - PB1D9 SINE Alu 0 120 17 1 1409 386 93 0 0 chr4 108049754 108049814 -47580306 + B1_Mus2 SINE Alu 52 138 -9 1 1409 225 0 0 0 chr4 108049814 108049839 -47580281 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1409 803 332 145 21 chr4 108050435 108050822 -47579298 + LTR16C LTR ERVL 1 435 -54 1 1409 753 178 89 0 chr4 108050823 108050958 -47579162 + B1_Mus2 SINE Alu 1 147 0 1 1409 722 241 83 119 chr4 108051132 108051434 -47578686 + B4 SINE B4 2 292 0 1 1409 757 274 11 5 chr4 108052565 108052756 -47577364 + B3 SINE B2 10 201 -15 1 1409 263 358 90 1 chr4 108053118 108053263 -47576857 + MIRm SINE MIR 3 158 -50 1 1409 1239 54 0 0 chr4 108053532 108053679 -47576441 - B1_Mus2 SINE Alu 0 147 1 1 1409 517 250 30 22 chr4 108053689 108053824 -47576296 - B1F SINE Alu -6 143 8 1 1409 1442 143 4 9 chr4 108054043 108054269 -47575851 + URR1B DNA MER1_type 1 225 0 1 1409 233 296 14 40 chr4 108054284 108054358 -47575762 + ID4 SINE ID 1 72 -11 1 1409 210 321 71 0 chr4 108056527 108056611 -47573509 - B1F1 SINE Alu -58 91 2 1 1409 517 244 43 0 chr4 108057283 108057398 -47572722 + PB1 SINE Alu 1 120 -7 1 1409 232 250 18 18 chr4 108057441 108057498 -47572622 + ID4 SINE ID 23 79 -4 1 1409 313 100 100 0 chr4 108058336 108058386 -47571734 - HAL1-3A_ME LINE L1 -828 2030 1976 1 1409 459 160 0 0 chr4 108058392 108058486 -47571634 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1409 263 313 29 3 chr4 108058624 108058732 -47571388 - MIRc SINE MIR -19 189 77 1 1409 426 229 19 56 chr4 108058990 108059147 -47570973 + B1_Mus2 SINE Alu 34 147 0 1 1409 316 239 6 6 chr4 108059329 108059493 -47570627 + (CA)n Simple_repeat Simple_repeat 2 165 0 1 1409 306 0 0 0 chr4 108059889 108059923 -47570197 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1409 247 152 12 48 chr4 108059990 108060073 -47570047 + GA-rich Low_complexity Low_complexity 1 80 0 1 1409 355 200 36 22 chr4 108060087 108060314 -47569806 + GA-rich Low_complexity Low_complexity 1 230 0 1 1409 252 137 0 0 chr4 108061007 108061058 -47569062 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1409 216 0 0 0 chr4 108061171 108061195 -47568925 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1409 307 183 198 9 chr4 108061198 108061314 -47568806 - L1M5 LINE L1 -579 5600 5463 1 1409 294 299 38 25 chr4 108061297 108061337 -47568783 - L1MA4A LINE L1 -1092 5917 5881 1 1409 622 202 173 0 chr4 108061337 108061505 -47568615 - B3A SINE B2 -1 197 1 1 1409 499 242 26 0 chr4 108061505 108061622 -47568498 - L1MA4A LINE L1 -395 5908 5759 1 1409 338 222 25 0 chr4 108061795 108061876 -47568244 + ID_B1 SINE B4 121 203 -21 1 1409 762 153 73 0 chr4 108061890 108062027 -47568093 + B1_Mur1 SINE Alu 1 147 -2 1 1409 23 33 0 0 chr4 108062077 108062107 -47568013 + AT_rich Low_complexity Low_complexity 1 30 0 1 1409 633 243 0 28 chr4 108062107 108062251 -47567869 - RSINE1 SINE B4 -22 143 4 1 1409 538 143 163 0 chr4 108062310 108062408 -47567712 + B1_Mus2 SINE Alu 21 134 -13 1 1409 246 62 0 0 chr4 108062408 108062440 -47567680 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1409 285 29 0 0 chr4 108062451 108062485 -47567635 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1409 225 0 0 0 chr4 108062485 108062509 -47567611 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1409 569 267 41 25 chr4 108062517 108062713 -47567407 - L1MA4A LINE L1 -613 5684 5433 1 1409 483 268 23 8 chr4 108062724 108062852 -47567268 - B1F2 SINE Alu -4 145 16 2 1409 390 91 0 0 chr4 108063026 108063081 -47567039 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 2 1409 1985 74 11 4 chr4 108063095 108063368 -47566752 - L1_Mus3 LINE L1 -6 6632 6358 2 1409 722 230 14 70 chr4 108063379 108063594 -47566526 - B3 SINE B2 -13 203 1 2 1409 327 235 42 176 chr4 108063676 108063841 -47566279 - B3A SINE B2 -54 144 2 2 1409 361 263 41 21 chr4 108063746 108063843 -47566277 - RSINE1 SINE B4 -66 99 1 2 1409 506 16 16 0 chr4 108064303 108064366 -47565754 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1409 274 265 22 78 chr4 108064400 108064490 -47565630 - PB1D10 SINE Alu -28 89 5 2 1409 308 256 24 24 chr4 108064411 108064495 -47565625 - ID_B1 SINE B4 -59 165 82 2 1409 930 131 13 27 chr4 108064605 108064754 -47565366 - B1_Mus1 SINE Alu 0 148 2 2 1409 314 356 59 82 chr4 108065473 108065751 -47564369 + L2b LINE L2 3029 3297 -78 2 1409 252 0 0 0 chr4 108065751 108065779 -47564341 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1409 314 356 59 82 chr4 108065779 108065855 -47564265 + L2b LINE L2 3298 3375 0 2 1409 406 311 23 202 chr4 108066124 108066194 -47563926 + MER44D DNA MER2_type 16 78 -627 2 1409 1683 27 0 0 chr4 108066194 108066382 -47563738 - B2_Mm1a SINE B2 -4 189 2 2 1409 406 311 23 202 chr4 108066382 108066446 -47563674 + MER44D DNA MER2_type 79 103 -602 2 1409 800 203 0 0 chr4 108066446 108066584 -47563536 - B1_Mur2 SINE Alu -11 138 1 2 1409 406 311 23 202 chr4 108066584 108066710 -47563410 + MER44D DNA MER2_type 104 230 -475 2 1409 234 0 0 0 chr4 108066716 108066742 -47563378 + (GGAGA)n Simple_repeat Simple_repeat 1 26 0 2 1409 389 224 137 18 chr4 108066743 108066911 -47563209 + MER44D DNA MER2_type 469 655 -50 2 1409 232 200 0 104 chr4 108067012 108067079 -47563041 - MER66C LTR ERV1 -42 513 454 2 1409 513 228 192 16 chr4 108067285 108067410 -47562710 + B1_Mur1 SINE Alu 3 149 0 2 1409 751 244 12 18 chr4 108067468 108067639 -47562481 + B3 SINE B2 1 170 -46 2 1409 1067 43 14 0 chr4 108067723 108067863 -47562257 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 2 1409 455 260 53 94 chr4 108067885 108068055 -47562065 - RSINE1 SINE B4 0 165 3 2 1409 1264 23 29 0 chr4 108068300 108068472 -47561648 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2 1409 270 56 0 0 chr4 108068472 108068508 -47561612 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 2 1409 709 203 28 0 chr4 108068953 108069096 -47561024 - B1_Mur3 SINE Alu -2 147 1 2 1409 316 257 9 122 chr4 108068995 108069110 -47561010 - MT2B LTR ERVL -345 256 155 2 1409 488 300 68 10 chr4 108069725 108069917 -47560203 - B3 SINE B2 -13 203 1 2 1409 565 238 41 20 chr4 108069926 108070072 -47560048 - ID_B1 SINE B4 0 224 76 2 1409 33 0 0 0 chr4 108070130 108070163 -47559957 + AT_rich Low_complexity Low_complexity 1 33 0 2 1409 278 268 19 76 chr4 108070185 108070290 -47559830 - RSINE1 SINE B4 -64 101 3 2 1409 659 228 0 0 chr4 108070511 108070638 -47559482 + RSINE1 SINE B4 14 140 -25 2 1409 279 270 14 0 chr4 108071241 108071315 -47558805 + PB1D10 SINE Alu 35 109 -8 2 1409 444 267 198 59 chr4 108071326 108071513 -47558607 + B4 SINE B4 1 213 -79 2 1409 593 54 3 2 chr4 108071513 108071606 -47558514 - B1_Mm SINE Alu 0 149 56 2 1409 1135 225 4 44 chr4 108071691 108071961 -47558159 + RMER1C Other Other 1067 1325 -17 2 1409 659 188 94 0 chr4 108071983 108072111 -47558009 + B1_Mur2 SINE Alu 5 144 -5 2 1409 401 269 24 27 chr4 108072283 108072432 -47557688 - MTEa LTR MaLR -3 376 222 2 1409 243 0 0 0 chr4 108072656 108072683 -47557437 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1409 713 33 0 0 chr4 108072685 108072776 -47557344 - B1_Mus2 SINE Alu -10 137 47 2 1409 257 179 0 107 chr4 108072710 108072785 -47557335 - MT2B2 LTR ERVL -320 264 198 2 1409 182 305 36 24 chr4 108073078 108073162 -47556958 - MIR SINE MIR -20 242 158 2 1409 402 297 8 8 chr4 108073672 108073791 -47556329 + MER5B DNA MER1_type 53 171 -7 2 1409 966 226 35 15 chr4 108074341 108074539 -47555581 - B3 SINE B2 -14 202 1 2 1409 25 31 0 0 chr4 108074549 108074581 -47555539 + AT_rich Low_complexity Low_complexity 1 32 0 2 1409 339 25 0 0 chr4 108074591 108074631 -47555489 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1409 429 20 0 0 chr4 108074631 108074680 -47555440 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1409 666 158 53 0 chr4 108074681 108074795 -47555325 - B3 SINE B2 -96 120 1 2 1409 808 151 7 21 chr4 108074903 108075045 -47555075 + B1_Mur4 SINE Alu 5 144 -6 2 1409 588 95 0 0 chr4 108075050 108075134 -47554986 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 1409 258 304 108 0 chr4 108076960 108077062 -47553058 - MER20 DNA MER1_type -7 212 100 2 1409 357 253 54 9 chr4 108077092 108077200 -47552920 + PB1D10 SINE Alu 6 117 0 2 1409 344 249 0 73 chr4 108077212 108077309 -47552811 + B1_Mur4 SINE Alu 1 91 -59 2 1409 549 206 28 0 chr4 108077322 108077429 -47552691 - B1_Mur1 SINE Alu -22 127 18 2 1409 186 43 0 0 chr4 108077479 108077502 -47552618 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1409 729 167 21 42 chr4 108077502 108077638 -47552482 - B1_Mus2 SINE Alu -10 137 2 2 1409 22 0 0 0 chr4 108078128 108078150 -47551970 + AT_rich Low_complexity Low_complexity 1 22 0 2 1409 598 193 71 43 chr4 108078164 108078305 -47551815 - B1_Mur2 SINE Alu 0 149 5 2 1409 206 259 19 0 chr4 108079575 108079629 -47550491 + MIR SINE MIR 81 135 -133 2 1409 195 0 0 79 chr4 108080109 108080147 -47549973 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 2 1409 272 226 0 123 chr4 108080471 108080577 -47549543 + MT2B LTR ERVL 148 240 -361 2 1409 502 244 44 30 chr4 108080501 108080636 -47549484 + B1_Mur1 SINE Alu 8 144 -5 2 1409 211 184 0 0 chr4 108080899 108080937 -47549183 + G-rich Low_complexity Low_complexity 1 38 0 2 1409 21 0 0 0 chr4 108081779 108081800 -47548320 + AT_rich Low_complexity Low_complexity 1 21 0 2 1409 255 61 0 0 chr4 108081991 108082024 -47548096 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1409 1187 57 6 0 chr4 108082024 108082182 -47547938 - B2_Mm1a SINE B2 -33 160 2 2 1409 2564 31 71 45 chr4 108082529 108082582 -47547538 - ORR1A1 LTR MaLR 0 346 294 2 1409 1653 26 5 0 chr4 108082582 108082774 -47547346 - B2_Mm1t SINE B2 0 193 1 2 1409 2564 31 71 45 chr4 108082774 108083057 -47547063 - ORR1A1 LTR MaLR -53 293 1 2 1409 13622 56 8 45 chr4 108083057 108084919 -47545201 - ORR1A1-int LTR MaLR 0 1792 1 2 1409 3174 74 24 2 chr4 108084920 108085378 -47544742 - MT2C_Mm LTR ERVL -7 468 1 2 1409 698 253 156 27 chr4 108085407 108085838 -47544282 - MT2A LTR ERVL 0 533 85 2 1409 1871 137 14 49 chr4 108085852 108086198 -47543922 + MT2C_Mm LTR ERVL 142 475 0 2 1409 11612 128 31 40 chr4 108086198 108088116 -47542004 + MERVL-int LTR ERVL 1 1901 -3584 2 1409 1026 118 244 5 chr4 108088110 108088331 -47541789 + MERVL_2A-int LTR ERVL 5350 5623 -138 2 1409 6410 161 32 21 chr4 108088334 108088520 -47541600 - MERVL_2A-int LTR ERVL -231 5530 5341 2 1409 2931 55 3 27 chr4 108088520 108088894 -47541226 - RLTR10B2 LTR ERVK 0 365 1 2 1409 6410 161 32 21 chr4 108088894 108089312 -47540808 - MERVL_2A-int LTR ERVL -421 5340 4916 2 1409 1346 62 90 0 chr4 108089312 108089470 -47540650 + B2_Mm1t SINE B2 1 158 -35 2 1409 261 0 0 0 chr4 108089470 108089499 -47540621 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1409 1346 62 90 0 chr4 108089499 108089517 -47540603 + B2_Mm1t SINE B2 159 191 -2 2 1409 6410 161 32 21 chr4 108089517 108090007 -47540113 - MERVL_2A-int LTR ERVL -846 4915 4423 2 1409 5851 137 80 10 chr4 108090021 108090959 -47539161 - MERVL_2A-int LTR ERVL -1397 4364 3361 2 1409 6472 136 61 71 chr4 108090964 108091370 -47538750 - MERVL_2A-int LTR ERVL -2579 3182 2792 2 1409 453 36 0 0 chr4 108091370 108091425 -47538695 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1409 6472 136 61 71 chr4 108091425 108091487 -47538633 - MERVL_2A-int LTR ERVL -2970 2791 2788 2 1409 1209 48 7 0 chr4 108091487 108091633 -47538487 - B1_Mus1 SINE Alu 0 148 2 2 1409 6472 136 61 71 chr4 108091633 108092350 -47537770 - MERVL_2A-int LTR ERVL -2974 2787 2008 2 1409 331 250 11 11 chr4 108092354 108092447 -47537673 - L2 LINE L2 -521 2898 2806 2 1409 280 292 0 0 chr4 108093222 108093311 -47536809 + PB1D10 SINE Alu 27 115 -2 2 1409 3382 33 5 2 chr4 108093470 108093865 -47536255 - MTA_Mm LTR MaLR 0 396 1 2 1409 8284 64 19 4 chr4 108093865 108094946 -47535174 - MTA_Mm-int LTR MaLR 0 1098 1 2 1409 3323 43 2 5 chr4 108094946 108095343 -47534777 - MTA_Mm LTR MaLR 0 396 1 2 1409 6028 60 55 16 chr4 108095343 108096300 -47533820 - L1VL2 LINE L1 -1801 1814 822 2 1409 1280 27 0 0 chr4 108096300 108096446 -47533674 - B1_Mm SINE Alu 0 147 2 2 1409 5550 79 3 114 chr4 108096446 108097151 -47532969 - L1VL2 LINE L1 -5514 821 208 2 1409 391 305 39 28 chr4 108097202 108097384 -47532736 - L2 LINE L2 -811 2608 2425 2 1409 378 219 94 59 chr4 108097384 108097554 -47532566 - MER63D DNA AcHobo 0 1061 886 2 1409 21 0 0 0 chr4 108097580 108097601 -47532519 + AT_rich Low_complexity Low_complexity 1 21 0 2 1409 562 286 86 59 chr4 108097700 108098071 -47532049 - L2 LINE L2 -1023 2396 2016 2 1409 255 59 0 0 chr4 108098095 108098129 -47531991 - B1_Mus1 SINE Alu -113 35 2 2 1409 752 191 20 20 chr4 108098154 108098304 -47531816 - B1_Mur4 SINE Alu 0 150 1 2 1409 224 30 30 0 chr4 108098347 108098380 -47531740 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1409 211 179 54 0 chr4 108098947 108099003 -47531117 + CT-rich Low_complexity Low_complexity 1 59 0 2 1409 538 288 71 38 chr4 108099146 108099330 -47530790 + ID_B1 SINE B4 23 212 -12 2 1409 233 264 13 40 chr4 108099369 108099444 -47530676 + ID_B1 SINE B4 152 224 0 2 1409 34 0 0 0 chr4 108099470 108099504 -47530616 + AT_rich Low_complexity Low_complexity 1 34 0 2 1409 907 167 7 0 chr4 108099504 108099648 -47530472 - B1_Mur4 SINE Alu -5 145 1 2 1409 316 203 0 0 chr4 108099658 108099717 -47530403 + MER112 DNA MER1_type 6 64 -197 2 1409 388 242 0 10 chr4 108099748 108099844 -47530276 + RSINE1 SINE B4 2 96 -69 2 1409 632 200 7 0 chr4 108099844 108099984 -47530136 + GA-rich Low_complexity Low_complexity 1 141 0 2 1409 234 318 61 0 chr4 108099986 108100052 -47530068 + RSINE1 SINE B4 86 155 -10 2 1409 206 62 31 0 chr4 108100091 108100123 -47529997 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1409 234 0 0 0 chr4 108100249 108100275 -47529845 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1409 822 73 186 0 chr4 108100286 108100410 -47529710 - B1_Mus1 SINE Alu 0 148 2 2 1409 264 336 42 33 chr4 108100412 108100532 -47529588 + MIR SINE MIR 123 243 -19 2 1409 212 394 19 0 chr4 108101075 108101179 -47528941 - MIR SINE MIR -60 148 43 2 1409 234 317 12 0 chr4 108101352 108101434 -47528686 + MTEa LTR MaLR 1 83 -276 3 1409 456 230 55 46 chr4 108101480 108101645 -47528475 + MTEa LTR MaLR 189 377 -2 3 1409 291 28 0 0 chr4 108101804 108101840 -47528280 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1409 405 284 0 0 chr4 108101868 108101970 -47528150 + B1F SINE Alu 48 149 0 3 1409 273 146 0 0 chr4 108101970 108102018 -47528102 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1409 264 293 101 0 chr4 108102196 108102295 -47527825 + MIR SINE MIR 91 199 -63 3 1409 192 167 28 0 chr4 108102601 108102637 -47527483 + MIRm SINE MIR 225 261 -15 3 1409 272 345 76 6 chr4 108102637 108102809 -47527311 - L1ME3A LINE L1 0 6173 5990 3 1409 1218 41 0 0 chr4 108103002 108103149 -47526971 - B1_Mus2 SINE Alu 0 147 1 3 1409 330 26 0 0 chr4 108103230 108103269 -47526851 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1409 988 270 17 38 chr4 108103272 108103561 -47526559 - B4 SINE B4 -9 283 1 3 1409 269 253 26 15 chr4 108103571 108103657 -47526463 - ID4 SINE ID -58 94 2 3 1409 256 336 25 0 chr4 108103685 108103807 -47526313 + L2c LINE L2 3240 3369 -6 3 1409 302 98 0 19 chr4 108104795 108104847 -47525273 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1409 426 189 40 40 chr4 108104856 108104955 -47525165 - PB1D10 SINE Alu -14 103 5 3 1409 994 259 20 33 chr4 108105103 108105403 -47524717 + L1MA4A LINE L1 5669 5964 -339 3 1409 383 69 0 33 chr4 108106482 108106542 -47523578 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 3 1409 204 228 0 0 chr4 108106636 108106693 -47523427 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1409 651 263 111 27 chr4 108106717 108106979 -47523141 - B4A SINE B4 -6 286 3 3 1409 657 225 0 0 chr4 108107026 108107155 -47522965 - ID_B1 SINE B4 -5 219 91 3 1409 22 35 0 0 chr4 108107271 108107300 -47522820 + AT_rich Low_complexity Low_complexity 1 29 0 3 1409 208 196 19 19 chr4 108107864 108107916 -47522204 - MIR SINE MIR -89 173 122 3 1409 526 250 113 19 chr4 108107923 108108082 -47522038 + B4A SINE B4 1 174 -118 3 1409 486 33 0 0 chr4 108108158 108108218 -47521902 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1409 2289 148 36 33 chr4 108108222 108108642 -47521478 - MTC LTR MaLR 0 421 1 3 1409 230 319 41 31 chr4 108108722 108108819 -47521301 - MIRb SINE MIR -140 128 31 3 1409 254 208 167 13 chr4 108109093 108109171 -47520949 - MLT1B LTR MaLR -41 349 260 3 1409 477 125 42 0 chr4 108109172 108109268 -47520852 + T-rich Low_complexity Low_complexity 5 104 0 3 1409 1052 180 48 10 chr4 108109279 108109487 -47520633 - B3 SINE B2 0 216 1 3 1409 416 310 91 83 chr4 108109487 108109739 -47520381 - MLT1B LTR MaLR -115 275 22 3 1409 265 357 119 38 chr4 108109983 108110143 -47519977 - MLT1N2 LTR MaLR -298 264 92 3 1409 693 200 154 39 chr4 108110182 108110364 -47519756 + B3 SINE B2 1 203 -13 3 1409 28 0 0 0 chr4 108110366 108110394 -47519726 + AT_rich Low_complexity Low_complexity 1 28 0 3 1409 440 229 96 129 chr4 108110963 108111234 -47518886 - MamRep605 Unknown Unknown -153 723 462 3 1409 200 342 25 62 chr4 108111283 108111445 -47518675 - MER5B DNA MER1_type -3 175 20 3 1409 550 254 58 7 chr4 108111923 108112062 -47518058 - ID_B1 SINE B4 0 224 79 3 1409 259 330 96 41 chr4 108112168 108112386 -47517734 - HAL1b LINE L1 -425 1584 1355 3 1409 501 17 0 0 chr4 108112462 108112520 -47517600 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1409 979 56 0 0 chr4 108112521 108112646 -47517474 - B1_Mus2 SINE Alu -13 134 10 3 1409 238 239 28 0 chr4 108112665 108112736 -47517384 + T-rich Low_complexity Low_complexity 1 73 0 3 1409 603 233 17 8 chr4 108112761 108112878 -47517242 - RSINE1 SINE B4 -30 135 18 3 1409 686 252 98 36 chr4 108112922 108113158 -47516962 - B4A SINE B4 0 292 58 3 1409 373 194 13 40 chr4 108113160 108113235 -47516885 + RSINE1 SINE B4 76 148 -17 3 1409 267 265 118 0 chr4 108113270 108113338 -47516782 + ID4 SINE ID 1 76 -7 3 1409 2185 187 25 2 chr4 108113496 108113892 -47516228 + MTD LTR MaLR 1 405 -14 3 1409 292 315 0 0 chr4 108113977 108114069 -47516051 - MIR SINE MIR -86 122 31 3 1409 439 286 55 61 chr4 108114325 108114489 -47515631 - RSINE1 SINE B4 0 165 3 3 1409 668 94 0 9 chr4 108114534 108114641 -47515479 + (TCCA)n Simple_repeat Simple_repeat 3 108 0 3 1409 485 279 0 0 chr4 108114829 108114940 -47515180 - PB1D9 SINE Alu -7 113 3 3 1409 697 257 14 7 chr4 108115168 108115313 -47514807 + RSINE1 SINE B4 1 146 -19 3 1409 234 0 0 0 chr4 108115316 108115342 -47514778 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1409 516 312 5 80 chr4 108115909 108116097 -47514023 + B4 SINE B4 1 174 -118 3 1409 260 297 31 52 chr4 108116124 108116220 -47513900 + RSINE1 SINE B4 72 165 0 3 1409 350 249 32 16 chr4 108116248 108116504 -47513616 + (CA)n Simple_repeat Simple_repeat 1 260 0 3 1409 567 277 15 0 chr4 108116509 108116639 -47513481 - RSINE1 SINE B4 -32 133 2 3 1409 513 296 29 62 chr4 108116964 108117173 -47512947 + B3 SINE B2 15 216 0 3 1409 983 102 0 7 chr4 108117287 108117425 -47512695 + B1_Mus1 SINE Alu 1 137 -11 3 1409 182 37 37 0 chr4 108117440 108117467 -47512653 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1409 201 260 0 20 chr4 108117845 108117896 -47512224 + GA-rich Low_complexity Low_complexity 5 54 0 3 1409 354 296 127 18 chr4 108117900 108118010 -47512110 - RSINE1 SINE B4 -23 142 21 3 1409 861 140 29 0 chr4 108118036 108118172 -47511948 - B1_Mur4 SINE Alu -6 144 5 3 1409 354 279 45 9 chr4 108118181 108118293 -47511827 - PB1D7 SINE Alu -2 118 3 3 1409 666 0 0 0 chr4 108118349 108118423 -47511697 + (TTTCC)n Simple_repeat Simple_repeat 1 74 0 3 1409 1217 77 6 0 chr4 108118424 108118594 -47511526 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 1409 856 128 28 35 chr4 108118611 108118756 -47511364 - B1_Mur3 SINE Alu -1 148 5 3 1409 250 312 26 0 chr4 108118793 108118870 -47511250 - L2c LINE L2 -2 3424 3346 3 1409 619 227 0 0 chr4 108118904 108119023 -47511097 - B1_Mus2 SINE Alu -12 135 17 3 1409 349 314 85 30 chr4 108119039 108119288 -47510832 - L2c LINE L2 -68 3319 3049 3 1409 195 42 0 0 chr4 108119291 108119315 -47510805 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 3 1409 396 0 0 0 chr4 108119329 108119373 -47510747 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1409 227 79 0 26 chr4 108119478 108119517 -47510603 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 3 1409 324 0 0 0 chr4 108119537 108119573 -47510547 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 3 1409 589 301 0 34 chr4 108119630 108119778 -47510342 + RSINE1 SINE B4 15 157 -8 3 1409 26 30 0 0 chr4 108119780 108119813 -47510307 + AT_rich Low_complexity Low_complexity 1 33 0 3 1409 613 96 365 0 chr4 108119852 108119956 -47510164 + B1_Mur2 SINE Alu 3 144 -5 3 1409 515 326 5 42 chr4 108120022 108120211 -47509909 + B3A SINE B2 1 182 -16 3 1409 184 213 21 21 chr4 108120321 108120369 -47509751 + MIRc SINE MIR 49 96 -172 3 1409 261 281 0 15 chr4 108120393 108120458 -47509662 + MIR SINE MIR 163 226 -36 3 1409 773 176 14 0 chr4 108120557 108120705 -47509415 + B1_Mur4 SINE Alu 1 150 0 3 1409 252 0 0 0 chr4 108120708 108120736 -47509384 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1409 180 0 0 0 chr4 108121797 108121817 -47508303 + (TTGGGG)n Simple_repeat Simple_repeat 2 21 0 3 1409 622 304 36 69 chr4 108121919 108122055 -47508065 - MLT1A0 LTR MaLR -98 267 129 3 1409 705 172 58 22 chr4 108122055 108122192 -47507928 + B1_Mur4 SINE Alu 2 143 -7 3 1409 622 304 36 69 chr4 108122192 108122331 -47507789 - MLT1A0 LTR MaLR -237 128 1 3 1409 424 281 26 0 chr4 108122385 108122499 -47507621 - B1F SINE Alu 0 149 33 3 1409 254 129 0 67 chr4 108123071 108123146 -47506974 + CT-rich Low_complexity Low_complexity 3 72 0 3 1409 999 144 0 0 chr4 108123148 108123315 -47506805 + (TTC)n Simple_repeat Simple_repeat 3 169 0 3 1409 1293 59 18 0 chr4 108123998 108124168 -47505952 - B2_Mm2 SINE B2 0 195 23 3 1409 25 0 0 0 chr4 108124181 108124206 -47505914 + AT_rich Low_complexity Low_complexity 1 25 0 3 1409 581 274 113 12 chr4 108124251 108124593 -47505527 - MTEa LTR MaLR -2 377 1 3 1409 495 241 92 5 chr4 108124747 108125046 -47505074 - L1M3 LINE L1 -675 5496 5176 3 1409 718 291 25 0 chr4 108125064 108125222 -47504898 + RSINE1 SINE B4 4 165 0 3 1409 656 256 19 86 chr4 108125345 108125614 -47504506 - L1M3 LINE L1 -1074 5066 4816 3 1409 610 270 144 11 chr4 108125933 108126120 -47504000 + ID_B1 SINE B4 2 213 -11 3 1409 621 100 0 0 chr4 108126126 108126216 -47503904 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 3 1409 631 239 13 72 chr4 108126343 108126496 -47503624 - B1_Mur1 SINE Alu -2 147 4 3 1409 195 42 0 0 chr4 108126629 108126653 -47503467 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 3 1409 277 82 0 39 chr4 108126667 108126718 -47503402 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 3 1409 681 92 3 13 chr4 108126729 108126835 -47503285 + B1_Mm SINE Alu 48 139 -8 3 1409 1093 207 14 5 chr4 108126929 108127143 -47502977 - B3 SINE B2 0 216 1 3 1409 201 39 0 0 chr4 108127252 108127278 -47502842 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1409 388 296 93 57 chr4 108127278 108127418 -47502702 - RSINE1 SINE B4 -17 148 4 3 1409 253 288 0 40 chr4 108127789 108127865 -47502255 - ID4 SINE ID -9 74 2 3 1409 262 271 154 27 chr4 108128076 108128186 -47501934 - RSINE1 SINE B4 0 165 42 3 1409 538 265 154 39 chr4 108128386 108128645 -47501475 + B4A SINE B4 2 290 -2 3 1409 283 281 250 17 chr4 108129647 108129675 -47500445 + B1F1 SINE Alu 5 147 -2 3 1409 411 239 0 0 chr4 108129675 108129763 -47500357 + ID_B1 SINE B4 137 224 0 4 1409 316 308 0 6 chr4 108130276 108130372 -47499748 - BC1_Mm scRNA scRNA -59 93 1 4 1409 530 239 51 29 chr4 108130372 108130510 -47499610 - B1_Mur2 SINE Alu -3 146 6 4 1409 640 232 27 16 chr4 108130523 108130711 -47499409 - RMER1A Other Other 0 1030 841 4 1409 299 136 12 175 chr4 108130712 108130792 -47499328 + RLTR25A LTR ERVK 500 566 -537 4 1409 362 78 0 0 chr4 108130742 108130793 -47499327 + B1_Mus2 SINE Alu 43 93 -54 4 1409 365 253 38 0 chr4 108130790 108130869 -47499251 - PB1D7 SINE Alu -37 83 2 4 1409 228 67 0 0 chr4 108132139 108132169 -47497951 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 4 1409 180 152 0 0 chr4 108132578 108132611 -47497509 + C-rich Low_complexity Low_complexity 2 34 0 4 1409 369 93 0 0 chr4 108132679 108132733 -47497387 + (CGG)n Simple_repeat Simple_repeat 1 54 0 4 1410 1107 68 14 0 chr4 108134669 108134815 -47495305 - B1_Mus1 SINE Alu 0 148 1 4 1410 692 150 118 0 chr4 108134948 108135075 -47495045 - B1_Mur4 SINE Alu -8 142 1 4 1410 1340 70 10 36 chr4 108135089 108135283 -47494837 - B2_Mm1t SINE B2 -4 189 1 4 1410 398 268 31 0 chr4 108135438 108135535 -47494585 + PB1D9 SINE Alu 10 109 -11 4 1410 252 0 0 0 chr4 108135536 108135564 -47494556 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1410 1333 94 10 0 chr4 108135705 108135897 -47494223 - B2_Mm2 SINE B2 -1 194 1 4 1410 1214 64 92 6 chr4 108135937 108136110 -47494010 + B2_Mm2 SINE B2 3 190 -5 4 1410 189 303 234 12 chr4 108136511 108136678 -47493442 - MIRb SINE MIR -14 254 51 4 1410 220 321 0 0 chr4 108137039 108137092 -47493028 - ID_B1 SINE B4 -89 135 83 4 1410 549 261 58 7 chr4 108137217 108137356 -47492764 + RSINE1 SINE B4 4 149 -16 4 1410 231 114 0 0 chr4 108137361 108137396 -47492724 + (CG)n Simple_repeat Simple_repeat 2 36 0 4 1410 291 28 0 0 chr4 108137396 108137431 -47492689 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1410 248 295 144 10 chr4 108137680 108137818 -47492302 - MIR SINE MIR -113 155 6 4 1410 419 243 72 0 chr4 108138033 108138144 -47491976 - PB1D9 SINE Alu 0 120 2 4 1410 393 305 98 30 chr4 108138152 108138284 -47491836 - B3A SINE B2 0 198 58 4 1410 180 0 0 0 chr4 108138302 108138322 -47491798 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1410 683 71 121 0 chr4 108138322 108138421 -47491699 - B1_Mus2 SINE Alu -5 142 32 4 1410 198 0 0 0 chr4 108138426 108138448 -47491672 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1410 843 136 57 0 chr4 108138453 108138593 -47491527 - B1_Mur4 SINE Alu -2 148 1 4 1410 362 217 229 25 chr4 108138642 108138760 -47491360 - B1F2 SINE Alu -7 142 1 4 1410 306 148 0 0 chr4 108138788 108138842 -47491278 + (GGGAGA)n Simple_repeat Simple_repeat 2 55 0 4 1410 265 351 52 39 chr4 108138856 108138933 -47491187 - RSINE1 SINE B4 0 165 88 4 1410 351 0 0 0 chr4 108138971 108139010 -47491110 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1410 505 262 117 71 chr4 108139047 108139256 -47490864 - L1MB7 LINE L1 -79 6105 5870 4 1410 1191 96 67 0 chr4 108139256 108139434 -47490686 - B2_Mm2 SINE B2 -4 191 2 4 1410 505 262 117 71 chr4 108139434 108139486 -47490634 - L1MB7 LINE L1 -315 5869 5822 4 1410 493 0 0 0 chr4 108139486 108139548 -47490572 - L1Md_T LINE L1 0 6582 6521 4 1410 993 0 0 0 chr4 108139548 108139655 -47490465 - U6 snRNA snRNA 0 107 1 4 1410 505 262 117 71 chr4 108139655 108139741 -47490379 - L1MB7 LINE L1 -363 5821 5741 4 1410 198 0 0 0 chr4 108139766 108139788 -47490332 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1410 1426 74 11 0 chr4 108139806 108139996 -47490124 - B2_Mm1t SINE B2 -1 192 1 4 1410 396 351 23 29 chr4 108140005 108140178 -47489942 - L1MB7 LINE L1 -526 5658 5487 4 1410 279 173 0 0 chr4 108140185 108140237 -47489883 + CT-rich Low_complexity Low_complexity 1 52 0 4 1410 457 263 88 0 chr4 108140257 108140394 -47489726 - B1_Mur1 SINE Alu 0 149 1 4 1410 503 266 61 97 chr4 108140433 108140629 -47489491 - B3A SINE B2 -8 190 2 4 1410 407 333 47 27 chr4 108140653 108140801 -47489319 - B3A SINE B2 -42 156 6 4 1410 923 134 7 7 chr4 108140831 108140844 -47489276 - RMER19A LTR ERVK -8 729 717 4 1410 1383 78 5 15 chr4 108140844 108141039 -47489081 - B2_Mm1t SINE B2 0 193 1 4 1410 923 134 7 7 chr4 108141039 108141175 -47488945 - RMER19A LTR ERVK -21 716 581 4 1410 595 219 9 17 chr4 108141182 108141298 -47488822 - RSINE1 SINE B4 -36 129 15 4 1410 232 193 18 0 chr4 108141298 108141355 -47488765 + L1M3 LINE L1 5875 5932 -251 4 1410 821 153 8 0 chr4 108141806 108141937 -47488183 + B1_Mur3 SINE Alu 18 149 0 4 1410 227 279 128 0 chr4 108141945 108142031 -47488089 - MTE-int LTR MaLR -70 1510 1414 4 1410 804 255 24 24 chr4 108142035 108142248 -47487872 + B3 SINE B2 1 213 -3 4 1410 268 347 40 0 chr4 108142294 108142369 -47487751 + ID4 SINE ID 5 82 -1 4 1410 1574 358 76 79 chr4 108142353 108143734 -47486386 - MTE-int LTR MaLR -143 1437 61 4 1410 362 324 35 18 chr4 108143764 108143877 -47486243 - ID_B1 SINE B4 -19 205 91 4 1410 258 220 9 149 chr4 108143907 108144014 -47486106 - ORR1E LTR MaLR -9 370 269 4 1410 380 346 30 30 chr4 108144226 108144360 -47485760 - RSINE1 SINE B4 -29 136 3 4 1410 577 347 27 36 chr4 108144585 108144809 -47485311 - B4 SINE B4 -69 223 2 4 1410 365 260 115 0 chr4 108144911 108145007 -47485113 - MER45B DNA Tip100 -8 1032 926 4 1410 702 281 6 30 chr4 108145188 108145353 -47484767 - RSINE1 SINE B4 -2 163 3 4 1410 600 259 174 15 chr4 108145356 108145615 -47484505 - RMER5 LTR ERV1 -138 396 97 4 1410 1234 28 0 0 chr4 108145796 108145940 -47484180 + B1_Mus2 SINE Alu 1 144 -3 4 1410 213 65 0 0 chr4 108145940 108145971 -47484149 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1410 543 298 40 0 chr4 108146039 108146190 -47483930 - RSINE1 SINE B4 -4 161 5 4 1410 23 0 0 0 chr4 108146190 108146213 -47483907 + AT_rich Low_complexity Low_complexity 1 23 0 4 1410 639 257 27 21 chr4 108146272 108146459 -47483661 - B3A SINE B2 -9 189 2 4 1410 1139 68 0 0 chr4 108146486 108146632 -47483488 - B1_Mus2 SINE Alu -1 146 1 4 1410 21 36 0 0 chr4 108146641 108146669 -47483451 + AT_rich Low_complexity Low_complexity 1 28 0 4 1410 1262 20 0 0 chr4 108146705 108146852 -47483268 - B1_Mm SINE Alu 0 147 1 4 1410 342 225 103 33 chr4 108146993 108147092 -47483028 - B1_Mur4 SINE Alu -40 109 2 4 1410 333 299 173 36 chr4 108147162 108147301 -47482819 + RSINE1 SINE B4 6 163 -2 4 1410 461 143 137 103 chr4 108147331 108147448 -47482672 - B1_Mur3 SINE Alu -22 125 5 4 1410 233 175 25 0 chr4 108147450 108147490 -47482630 - B3 SINE B2 -175 41 1 4 1410 321 154 0 0 chr4 108147827 108147875 -47482245 + T-rich Low_complexity Low_complexity 18 65 0 4 1410 1051 21 6 136 chr4 108147875 108148037 -47482083 - B1_Mm SINE Alu -6 141 1 4 1410 321 154 0 0 chr4 108148037 108148053 -47482067 + T-rich Low_complexity Low_complexity 2 17 0 4 1410 8889 103 17 19 chr4 108148063 108149462 -47480658 - Lx2 LINE L1 0 6997 5601 4 1410 1349 90 0 11 chr4 108149605 108149795 -47480325 + B2_Mm2 SINE B2 1 188 -7 4 1410 490 312 41 18 chr4 108150530 108150749 -47479371 - L1MC1 LINE L1 -32 6301 6078 4 1410 563 159 50 50 chr4 108150913 108151072 -47479048 - Lx4B LINE L1 -4 7054 6896 4 1410 508 188 9 11 chr4 108151221 108151332 -47478788 - B1_Mur1 SINE Alu -2 147 38 4 1410 215 265 0 109 chr4 108152588 108152643 -47477477 - ID4 SINE ID -32 51 3 4 1410 354 241 51 0 chr4 108152653 108152732 -47477388 - B1F SINE Alu 0 149 67 4 1410 26 30 0 0 chr4 108152732 108152765 -47477355 + AT_rich Low_complexity Low_complexity 1 33 0 4 1410 612 286 33 33 chr4 108152772 108152953 -47477167 - B3A SINE B2 -16 182 2 4 1410 536 118 12 0 chr4 108152982 108153067 -47477053 - B2_Mm2 SINE B2 -108 87 2 4 1410 7656 45 15 2 chr4 108153146 108154593 -47475527 - L1Md_F2 LINE L1 -12 6570 5105 4 1410 312 91 0 0 chr4 108154648 108154692 -47475428 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1410 1118 62 7 27 chr4 108155115 108155265 -47474855 + B1_Mus1 SINE Alu 1 147 -1 4 1410 333 0 0 0 chr4 108155348 108155385 -47474735 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1410 571 202 15 68 chr4 108155513 108155646 -47474474 + B1_Mur1 SINE Alu 2 127 -22 4 1410 295 253 205 0 chr4 108155743 108155826 -47474294 - ID_B1 SINE B4 -16 208 109 4 1410 339 25 0 0 chr4 108155834 108155874 -47474246 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1410 314 297 14 0 chr4 108155971 108156045 -47474075 + ID SINE ID 1 75 -149 4 1410 675 219 24 8 chr4 108156121 108156245 -47473875 + RSINE1 SINE B4 4 129 -36 4 1410 222 37 0 0 chr4 108156279 108156306 -47473814 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1410 1414 170 85 20 chr4 108156353 108156647 -47473473 - ORR1C1 LTR MaLR -65 313 1 4 1410 234 191 0 0 chr4 108157339 108157386 -47472734 - Charlie14a DNA MER1_type -1109 55 9 4 1410 1181 34 7 7 chr4 108157462 108157609 -47472511 + B1_Mm SINE Alu 1 147 0 4 1410 216 0 0 0 chr4 108157609 108157633 -47472487 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1410 1118 69 138 0 chr4 108157645 108157804 -47472316 + B2_Mm2 SINE B2 1 181 -14 4 1410 440 268 166 11 chr4 108157836 108158017 -47472103 - B3 SINE B2 -6 210 2 4 1410 255 305 158 0 chr4 108158077 108158159 -47471961 - B3 SINE B2 -84 132 38 4 1410 259 261 0 14 chr4 108158170 108158240 -47471880 - B1_Mur2 SINE Alu -7 142 74 5 1410 631 193 88 0 chr4 108158237 108158351 -47471769 - B3 SINE B2 -63 153 30 5 1410 563 283 27 20 chr4 108158374 108158522 -47471598 - B1_Mur2 SINE Alu 0 149 1 5 1410 791 175 48 14 chr4 108158605 108158750 -47471370 - B1_Mur4 SINE Alu 0 150 1 5 1410 282 254 80 53 chr4 108158824 108158899 -47471221 - RSINE1 SINE B4 -84 81 5 5 1410 766 194 28 7 chr4 108159399 108159544 -47470576 - B1_Mur1 SINE Alu 0 149 2 5 1410 542 213 141 8 chr4 108159629 108159757 -47470363 + MER58A DNA MER1_type 46 190 -34 5 1410 229 197 0 27 chr4 108159760 108159833 -47470287 + CT-rich Low_complexity Low_complexity 1 71 0 5 1410 697 243 45 11 chr4 108159990 108160169 -47469951 - B3A SINE B2 -13 185 1 5 1410 275 338 14 0 chr4 108160363 108160437 -47469683 + ID2 SINE ID 4 78 -5 5 1410 22 56 0 0 chr4 108160461 108160497 -47469623 + AT_rich Low_complexity Low_complexity 1 36 0 5 1410 1134 172 5 36 chr4 108160990 108161213 -47468907 - B3 SINE B2 0 216 1 5 1410 278 360 23 0 chr4 108161263 108161349 -47468771 + B4A SINE B4 13 100 -192 5 1410 220 251 101 0 chr4 108161487 108161554 -47468566 + MIRc SINE MIR 156 222 -46 5 1410 184 194 0 27 chr4 108161780 108161817 -47468303 + L2 LINE L2 2278 2313 -1106 5 1410 645 281 48 19 chr4 108162178 108162388 -47467732 + B3 SINE B2 1 216 0 5 1410 1194 70 57 28 chr4 108162418 108162594 -47467526 + B2_Mm2 SINE B2 2 182 -13 5 1410 236 321 82 36 chr4 108162871 108162981 -47467139 + MIRb SINE MIR 119 233 -35 5 1410 2129 44 7 0 chr4 108163062 108163332 -47466788 - MTA_Mm LTR MaLR -54 342 71 5 1410 323 323 31 31 chr4 108163335 108163463 -47466657 + MARNA DNA Mariner 58 185 -401 5 1410 338 205 0 52 chr4 108163748 108163836 -47466284 - ID4 SINE ID -58 94 11 5 1410 493 107 24 72 chr4 108164223 108164348 -47465772 + B2_Mm2 SINE B2 1 193 -2 5 1410 339 248 253 27 chr4 108164584 108164785 -47465335 - B4A SINE B4 -16 276 32 5 1410 476 292 38 25 chr4 108164850 108165008 -47465112 - RSINE1 SINE B4 -4 161 2 5 1410 719 215 42 0 chr4 108165117 108165261 -47464859 - B1_Mur4 SINE Alu 0 150 1 5 1410 181 252 68 136 chr4 108165569 108165716 -47464404 - L3 LINE CR1 -2365 2124 1988 5 1410 21 57 0 0 chr4 108166271 108166306 -47463814 + AT_rich Low_complexity Low_complexity 1 35 0 5 1410 1192 55 0 0 chr4 108166306 108166452 -47463668 + B1_Mus2 SINE Alu 2 147 0 5 1410 252 326 50 50 chr4 108166479 108166579 -47463541 + L2c LINE L2 3116 3215 -172 5 1410 875 0 35 0 chr4 108166601 108166716 -47463404 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1410 560 234 6 61 chr4 108166890 108166919 -47463201 - B3A SINE B2 -2 196 171 5 1410 183 80 0 0 chr4 108166919 108166944 -47463176 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1410 560 234 6 61 chr4 108166944 108167078 -47463042 - B3A SINE B2 -28 170 42 5 1410 932 163 0 13 chr4 108167105 108167254 -47462866 - B1_Mus1 SINE Alu -1 147 1 5 1410 1432 78 16 0 chr4 108167267 108167459 -47462661 - B2_Mm2 SINE B2 0 195 1 5 1410 27 81 0 0 chr4 108167508 108167570 -47462550 + AT_rich Low_complexity Low_complexity 1 62 0 5 1410 731 256 34 6 chr4 108168202 108168379 -47461741 - B3A SINE B2 -16 182 1 5 1410 993 93 0 0 chr4 108168485 108168614 -47461506 - B1_Mus1 SINE Alu -16 132 4 5 1410 636 272 29 15 chr4 108169274 108169479 -47460641 - B3 SINE B2 0 216 9 5 1410 527 244 29 64 chr4 108169930 108169960 -47460160 + ID_B1 SINE B4 49 213 -11 5 1410 859 125 7 35 chr4 108169960 108170101 -47460019 + B1_Mur3 SINE Alu 2 138 -11 5 1410 305 307 44 0 chr4 108170209 108170323 -47459797 - PB1D7 SINE Alu 0 120 2 5 1410 233 344 43 11 chr4 108170415 108170509 -47459611 - B4A SINE B4 -142 150 54 5 1410 768 71 0 0 chr4 108170650 108170748 -47459372 + U6 snRNA snRNA 7 104 -3 5 1410 450 88 0 0 chr4 108170748 108170816 -47459304 + L1_Mus3 LINE L1 6564 6631 -7 5 1410 285 253 57 95 chr4 108170868 108170973 -47459147 + RSINE1 SINE B4 3 103 -62 5 1410 1611 31 5 10 chr4 108170974 108171168 -47458952 - B2_Mm1a SINE B2 0 193 1 5 1410 1827 210 62 10 chr4 108171270 108171660 -47458460 - MTD LTR MaLR -8 411 2 5 1410 1416 75 5 0 chr4 108172262 108172448 -47457672 - B2_Mm1a SINE B2 -5 188 2 5 1410 282 209 55 82 chr4 108172486 108172507 -47457613 - ID4 SINE ID -1 82 67 5 1410 2009 106 77 26 chr4 108172507 108172818 -47457302 - ORR1A2 LTR MaLR 0 327 1 5 1410 282 209 55 82 chr4 108172818 108172869 -47457251 - ID4 SINE ID -17 66 12 5 1410 1456 52 0 0 chr4 108172913 108173087 -47457033 - B2_Mm1t SINE B2 -18 175 2 5 1410 246 325 56 88 chr4 108173097 108173185 -47456935 + MER44D DNA MER2_type 17 104 -601 5 1410 698 232 164 0 chr4 108173185 108173362 -47456758 - B3 SINE B2 -9 207 2 5 1410 246 325 56 88 chr4 108173362 108173398 -47456722 + MER44D DNA MER2_type 105 137 -568 5 1410 632 287 45 0 chr4 108173468 108173670 -47456450 + MER44D DNA MER2_type 473 683 -22 5 1410 292 56 0 0 chr4 108173672 108173708 -47456412 + U2 snRNA snRNA 1 36 -152 5 1410 756 172 13 52 chr4 108173896 108174049 -47456071 - B1_Mur2 SINE Alu -1 148 2 5 1410 189 0 0 0 chr4 108174288 108174309 -47455811 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1410 372 22 0 0 chr4 108174322 108174367 -47455753 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1410 453 281 0 0 chr4 108174404 108174500 -47455620 - RSINE1 SINE B4 -67 98 3 5 1410 33 25 0 0 chr4 108174969 108175009 -47455111 + AT_rich Low_complexity Low_complexity 1 40 0 5 1410 887 262 107 50 chr4 108175691 108175952 -47454168 + B4A SINE B4 3 278 -14 5 1410 201 246 35 0 chr4 108175981 108176038 -47454082 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 5 1410 246 265 186 29 chr4 108176045 108176115 -47454005 + RSINE1 SINE B4 1 81 -84 5 1410 493 243 63 69 chr4 108176506 108176665 -47453455 + RSINE1 SINE B4 2 159 -6 5 1410 603 252 7 0 chr4 108176785 108176928 -47453192 + B1_Mur1 SINE Alu 1 144 -5 5 1410 310 344 37 55 chr4 108177087 108177250 -47452870 - RSINE1 SINE B4 -2 163 4 5 1410 192 311 33 0 chr4 108177255 108177316 -47452804 - MIRc SINE MIR -118 150 88 5 1410 262 91 45 0 chr4 108177452 108177496 -47452624 + (TTCTC)n Simple_repeat Simple_repeat 5 50 0 5 1410 807 135 35 0 chr4 108177499 108177669 -47452451 + CT-rich Low_complexity Low_complexity 2 177 0 5 1410 236 113 38 0 chr4 108177969 108178022 -47452098 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 5 1410 308 333 170 0 chr4 108178031 108178166 -47451954 + RSINE1 SINE B4 4 161 -4 5 1410 353 212 228 20 chr4 108178723 108178872 -47451248 - MER44B DNA MER2_type -39 511 332 5 1410 242 217 32 48 chr4 108178841 108178904 -47451216 - MER44B DNA MER2_type -416 134 73 5 1410 713 229 72 33 chr4 108178930 108179111 -47451009 - B3 SINE B2 -6 210 23 5 1410 684 98 0 0 chr4 108179128 108179230 -47450890 + (TTCC)n Simple_repeat Simple_repeat 2 103 0 5 1410 303 106 21 0 chr4 108179230 108179277 -47450843 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1410 780 167 21 14 chr4 108179292 108179432 -47450688 - B1_Mur3 SINE Alu -8 141 1 5 1410 309 235 103 0 chr4 108179445 108179513 -47450607 - PB1D9 SINE Alu -45 75 1 5 1410 315 296 52 61 chr4 108179513 108179569 -47450551 - B4 SINE B4 -207 85 31 5 1410 1383 82 16 0 chr4 108179797 108179981 -47450139 - B2_Mm2 SINE B2 -8 187 1 5 1410 975 8 0 0 chr4 108180031 108180152 -47449968 + L1Md_A LINE L1 6462 6582 0 5 1410 240 35 0 0 chr4 108180178 108180207 -47449913 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1410 265 273 58 105 chr4 108180231 108180317 -47449803 + PB1D10 SINE Alu 28 109 -8 5 1410 414 0 0 0 chr4 108180653 108180699 -47449421 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1410 26 0 0 0 chr4 108180773 108180799 -47449321 + AT_rich Low_complexity Low_complexity 1 26 0 5 1410 216 139 47 0 chr4 108181129 108181172 -47448948 + MIR3 SINE MIR 112 156 -52 5 1410 192 152 0 0 chr4 108181273 108181306 -47448814 + T-rich Low_complexity Low_complexity 1 33 0 5 1410 1144 78 0 0 chr4 108181309 108181451 -47448669 - B1_Mus1 SINE Alu -5 143 2 5 1410 246 350 52 0 chr4 108181593 108181690 -47448430 - L2b LINE L2 -1 3374 3273 5 1410 819 335 239 24 chr4 108181744 108182853 -47447267 + L2c LINE L2 1438 2784 -635 5 1410 1148 42 7 0 chr4 108182882 108183025 -47447095 - B1_Mus2 SINE Alu -2 145 2 5 1410 237 299 79 0 chr4 108183398 108183525 -47446595 + L2c LINE L2 3208 3344 -82 5 1410 1133 78 0 0 chr4 108183657 108183799 -47446321 + B1_Mus1 SINE Alu 1 142 -6 5 1410 468 0 0 0 chr4 108183799 108183851 -47446269 + (CAACC)n Simple_repeat Simple_repeat 5 56 0 5 1410 238 231 0 71 chr4 108183997 108184067 -47446053 + L2c LINE L2 3317 3381 -6 5 1410 212 309 0 18 chr4 108184123 108184179 -47445941 - MER5B DNA MER1_type 0 178 124 5 1410 288 270 124 18 chr4 108184348 108184461 -47445659 + MER5B DNA MER1_type 54 178 0 5 1410 23 54 0 0 chr4 108184564 108184601 -47445519 + AT_rich Low_complexity Low_complexity 1 37 0 5 1410 472 279 7 72 chr4 108184975 108185110 -47445010 + PB1D7 SINE Alu 1 127 -21 5 1410 763 222 191 16 chr4 108186341 108186524 -47443596 - B3 SINE B2 0 216 2 5 1410 299 122 0 0 chr4 108186710 108186751 -47443369 - PB1D9 SINE Alu -65 55 15 5 1410 21 0 0 0 chr4 108186858 108186879 -47443241 + AT_rich Low_complexity Low_complexity 1 21 0 5 1410 521 77 39 0 chr4 108187038 108187116 -47443004 - B2_Mm2 SINE B2 -2 193 113 5 1410 2963 86 8 0 chr4 108187173 108187570 -47442550 - MTB LTR MaLR 0 400 1 5 1410 897 217 19 37 chr4 108187755 108187970 -47442150 - B3 SINE B2 -4 212 2 6 1410 342 0 0 0 chr4 108188000 108188038 -47442082 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1410 460 298 132 8 chr4 108188044 108188294 -47441826 - L1MA10 LINE L1 -67 6267 5987 6 1410 303 349 28 19 chr4 108188533 108188641 -47441479 + B1F SINE Alu 31 139 -10 6 1410 482 221 172 0 chr4 108188690 108188812 -47441308 + B1_Mur2 SINE Alu 1 143 -6 6 1410 1163 41 14 0 chr4 108188932 108189077 -47441043 - B1_Mus2 SINE Alu 0 147 1 6 1410 856 200 34 34 chr4 108189093 108189300 -47440820 - B3 SINE B2 -9 207 1 6 1410 625 316 30 5 chr4 108189455 108189652 -47440468 + B3 SINE B2 14 215 -1 6 1410 23 0 0 0 chr4 108189679 108189702 -47440418 + AT_rich Low_complexity Low_complexity 1 23 0 6 1410 628 268 35 48 chr4 108190393 108190624 -47439496 - L1MC3 LINE L1 -881 6904 6677 6 1410 214 207 63 79 chr4 108190634 108190697 -47439423 - B1_Mur3 SINE Alu -83 66 5 6 1410 498 302 126 102 chr4 108190712 108191089 -47439031 - L1MC3 LINE L1 -1090 6695 6278 6 1410 242 136 0 0 chr4 108191089 108191133 -47438987 - B1_Mus2 SINE Alu -21 126 83 6 1410 498 302 126 102 chr4 108191133 108191262 -47438858 - L1MC3 LINE L1 -1090 6277 6133 6 1410 234 105 0 0 chr4 108191272 108191310 -47438810 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1410 260 258 0 29 chr4 108191431 108191499 -47438621 - MTEa LTR MaLR -35 344 279 6 1410 296 261 32 64 chr4 108191883 108191977 -47438143 - B3 SINE B2 0 216 126 6 1410 668 227 8 0 chr4 108192042 108192174 -47437946 - B3 SINE B2 -81 135 3 6 1410 402 342 207 17 chr4 108192975 108193656 -47436464 - L2a LINE L2 -32 3394 2563 6 1410 405 227 80 0 chr4 108193798 108193885 -47436235 + B4 SINE B4 3 96 -196 6 1410 648 282 85 12 chr4 108193885 108194050 -47436070 + B3 SINE B2 1 177 -39 6 1410 361 330 0 10 chr4 108194056 108194157 -47435963 + B4 SINE B4 100 199 -93 6 1410 514 318 46 13 chr4 108194355 108194508 -47435612 + RSINE1 SINE B4 4 161 -4 6 1410 427 250 31 20 chr4 108194526 108194624 -47435496 - U6 snRNA snRNA 0 107 9 6 1410 630 323 25 0 chr4 108194740 108194898 -47435222 + RSINE1 SINE B4 4 165 0 6 1410 870 267 142 24 chr4 108195265 108195553 -47434567 - MTEa LTR MaLR 0 379 58 6 1410 22 0 0 0 chr4 108196119 108196141 -47433979 + AT_rich Low_complexity Low_complexity 1 22 0 6 1410 520 326 8 0 chr4 108196721 108196853 -47433267 + RSINE1 SINE B4 2 134 -31 6 1410 274 169 15 15 chr4 108196907 108196973 -47433147 + GA-rich Low_complexity Low_complexity 2 67 0 6 1410 327 183 17 0 chr4 108197098 108197158 -47432962 - Tigger16b DNA Tigger -145 192 132 6 1410 1019 59 73 0 chr4 108197504 108197640 -47432480 + B1_Mus2 SINE Alu 2 147 0 6 1410 362 144 82 12 chr4 108198104 108198204 -47431916 + B1_Mur4 SINE Alu 33 150 0 6 1410 204 158 0 0 chr4 108198226 108198264 -47431856 + (ATG)n Simple_repeat Simple_repeat 2 39 0 6 1410 520 183 92 78 chr4 108198332 108198474 -47431646 - B1_Mus1 SINE Alu -1 147 4 6 1410 198 0 0 0 chr4 108198967 108198989 -47431131 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6 1410 214 364 0 13 chr4 108199175 108199253 -47430867 - MER5A DNA MER1_type -100 89 13 6 1410 38 68 0 0 chr4 108199652 108199725 -47430395 + AT_rich Low_complexity Low_complexity 1 73 0 6 1410 201 94 0 0 chr4 108199739 108199771 -47430349 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1410 417 179 8 102 chr4 108199782 108199900 -47430220 + PB1D9 SINE Alu 1 107 -13 6 1410 207 0 0 0 chr4 108199904 108199927 -47430193 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1410 2463 228 73 67 chr4 108199930 108200177 -47429943 - L1_Rod LINE L1 -566 5281 5026 6 1410 1483 77 0 5 chr4 108200177 108200373 -47429747 + B2_Mm2 SINE B2 1 195 0 6 1410 2463 228 73 67 chr4 108200373 108201106 -47429014 - L1_Rod LINE L1 -822 5025 4295 6 1410 506 197 170 68 chr4 108201133 108201280 -47428840 + U1 snRNA snRNA 3 164 -1 6 1410 337 128 0 5 chr4 108201381 108201444 -47428676 - B2_Mm2 SINE B2 -107 109 48 6 1410 1179 112 17 11 chr4 108201473 108201653 -47428467 - B2_Mm2 SINE B2 -14 181 1 6 1410 216 97 0 0 chr4 108202022 108202053 -47428067 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1410 24 53 0 0 chr4 108202168 108202206 -47427914 + AT_rich Low_complexity Low_complexity 1 38 0 6 1410 619 202 100 8 chr4 108202206 108202336 -47427784 - B1_Mur2 SINE Alu -7 142 1 6 1410 377 316 25 31 chr4 108202341 108202504 -47427616 - B4A SINE B4 -123 169 8 6 1410 507 209 120 30 chr4 108202788 108202921 -47427199 + B1_Mur3 SINE Alu 2 146 -3 6 1410 689 299 6 17 chr4 108202932 108203109 -47427011 - B3 SINE B2 -11 205 31 6 1410 798 96 306 7 chr4 108203109 108203256 -47426864 - B2_Mm2 SINE B2 -4 191 1 6 1410 484 297 0 46 chr4 108203576 108203728 -47426392 + B1F SINE Alu 1 145 -4 6 1410 838 172 21 0 chr4 108203950 108204095 -47426025 + B1_Mus1 SINE Alu 1 148 0 6 1410 24 0 0 0 chr4 108204558 108204582 -47425538 + AT_rich Low_complexity Low_complexity 1 24 0 6 1410 426 248 51 34 chr4 108204582 108204699 -47425421 - PB1D9 SINE Alu -1 119 1 6 1410 22 0 0 0 chr4 108204861 108204883 -47425237 + AT_rich Low_complexity Low_complexity 1 22 0 6 1410 21 0 0 0 chr4 108204921 108204942 -47425178 + AT_rich Low_complexity Low_complexity 1 21 0 6 1410 542 279 81 95 chr4 108205046 108205162 -47424958 - L1MC1 LINE L1 -31 6302 6202 6 1410 1199 70 85 28 chr4 108205162 108205339 -47424781 - B2_Mm2 SINE B2 -6 189 3 6 1410 542 279 81 95 chr4 108205339 108205653 -47424467 - L1MC1 LINE L1 -132 6201 5878 6 1410 742 306 91 50 chr4 108205939 108206321 -47423799 - MTE2a LTR MaLR 0 419 18 6 1410 868 256 9 19 chr4 108206334 108206545 -47423575 + B3 SINE B2 2 210 -6 6 1410 304 210 62 0 chr4 108206652 108206733 -47423387 - L1MC1 LINE L1 -532 5801 5716 6 1410 329 299 75 0 chr4 108206751 108206858 -47423262 + ID_B1 SINE B4 62 176 -48 6 1410 555 224 0 0 chr4 108206775 108206873 -47423247 + PB1D10 SINE Alu 13 110 -7 6 1410 687 256 87 39 chr4 108206908 108207115 -47423005 + ID_B1 SINE B4 7 223 -1 6 1410 781 261 24 24 chr4 108207123 108207374 -47422746 - L1MC1 LINE L1 -644 5689 5439 6 1410 334 291 0 0 chr4 108207392 108207471 -47422649 - B3A SINE B2 -118 80 2 6 1410 510 299 7 33 chr4 108207757 108207909 -47422211 - B1F2 SINE Alu -1 148 1 6 1410 306 67 0 0 chr4 108207934 108207979 -47422141 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1410 388 235 107 12 chr4 108208076 108208244 -47421876 - L1MC1 LINE L1 -2197 3949 3766 6 1410 233 204 36 18 chr4 108208353 108208408 -47421712 + B1F SINE Alu 1 56 -93 6 1410 346 194 16 16 chr4 108208403 108208466 -47421654 - PB1D9 SINE Alu -55 65 3 6 1410 283 265 0 56 chr4 108208405 108208477 -47421643 - B4 SINE B4 -145 147 80 6 1410 636 237 64 14 chr4 108208733 108208874 -47421246 - B1_Mur2 SINE Alu -1 148 1 6 1410 1590 42 0 0 chr4 108208960 108209152 -47420968 - B2_Mm1a SINE B2 0 193 2 6 1410 244 225 157 36 chr4 108209374 108209457 -47420663 + PB1D10 SINE Alu 23 115 -2 6 1410 26 0 0 0 chr4 108209621 108209647 -47420473 + AT_rich Low_complexity Low_complexity 1 26 0 6 1410 643 186 17 8 chr4 108209665 108209784 -47420336 + B1_Mur1 SINE Alu 20 139 -10 6 1410 537 118 20 0 chr4 108209993 108210095 -47420025 - Lx9 LINE L1 -6 7638 7535 6 1410 567 189 9 9 chr4 108210095 108210202 -47419918 - U6 snRNA snRNA 0 107 1 6 1410 1091 89 0 7 chr4 108210252 108210399 -47419721 + B1_Mus1 SINE Alu 3 148 0 6 1410 269 300 0 24 chr4 108210658 108210740 -47419380 - ID4 SINE ID -3 80 1 6 1410 34 65 0 0 chr4 108210740 108210802 -47419318 + AT_rich Low_complexity Low_complexity 1 62 0 6 1410 546 253 151 62 chr4 108211205 108211509 -47418611 + L1MB3 LINE L1 5853 6183 0 6 1410 223 292 19 15 chr4 108211755 108211823 -47418297 - ID4 SINE ID -83 69 2 6 1410 293 179 237 102 chr4 108211831 108211949 -47418171 - B4 SINE B4 -153 139 6 6 1410 336 304 28 17 chr4 108212089 108212266 -47417854 + L1MB8 LINE L1 5993 6171 -7 6 1410 618 239 14 7 chr4 108212679 108212822 -47417298 + B1_Mm SINE Alu 1 144 -3 6 1410 34 42 0 0 chr4 108212822 108212870 -47417250 + AT_rich Low_complexity Low_complexity 1 48 0 6 1410 542 214 33 132 chr4 108212939 108213090 -47417030 + RSINE1 SINE B4 13 148 -17 6 1410 926 229 28 9 chr4 108213153 108213365 -47416755 + B3 SINE B2 1 216 0 6 1410 401 230 0 13 chr4 108213393 108213468 -47416652 + B3A SINE B2 3 76 -122 6 1410 679 288 67 16 chr4 108213733 108213927 -47416193 + ID_B1 SINE B4 2 205 -19 6 1410 340 319 43 0 chr4 108214027 108214121 -47415999 + B1F1 SINE Alu 1 98 -51 6 1410 24 67 0 0 chr4 108214751 108214796 -47415324 + AT_rich Low_complexity Low_complexity 1 45 0 6 1410 26 30 0 0 chr4 108215224 108215257 -47414863 + AT_rich Low_complexity Low_complexity 1 33 0 6 1410 180 0 0 0 chr4 108215831 108215851 -47414269 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1410 361 209 159 27 chr4 108216615 108216740 -47413380 + ID_B1 SINE B4 80 217 -75 6 1410 554 267 174 34 chr4 108217154 108217332 -47412788 + B3 SINE B2 2 204 -12 6 1410 672 189 23 55 chr4 108217406 108217582 -47412538 - Lx5 LINE L1 -135 6915 6768 6 1410 189 246 52 17 chr4 108217967 108218025 -47412095 - L2 LINE L2 -832 2587 2528 6 1410 462 89 0 25 chr4 108218326 108218407 -47411713 - L1Md_F2 LINE L1 0 6582 6504 6 1410 501 270 14 170 chr4 108218505 108218728 -47411392 - B3A SINE B2 -21 195 5 6 1410 294 179 0 0 chr4 108218759 108218815 -47411305 + CT-rich Low_complexity Low_complexity 2 57 0 6 1410 759 270 73 10 chr4 108218916 108219249 -47410871 - L1MB7 LINE L1 -351 5961 5601 6 1410 252 167 0 0 chr4 108219577 108219625 -47410495 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1410 405 0 0 0 chr4 108219627 108219672 -47410448 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1410 542 266 134 11 chr4 108219710 108219889 -47410231 + B3A SINE B2 2 202 -14 7 1410 225 394 19 13 chr4 108220080 108220237 -47409883 + MIRb SINE MIR 4 161 -107 7 1410 22 56 0 0 chr4 108220335 108220371 -47409749 + AT_rich Low_complexity Low_complexity 1 36 0 7 1410 764 200 21 0 chr4 108220371 108220511 -47409609 - B1_Mur4 SINE Alu -2 148 6 7 1410 419 250 32 128 chr4 108220401 108220557 -47409563 - MT2B LTR ERVL -334 267 127 7 1410 22 35 0 0 chr4 108220624 108220653 -47409467 + AT_rich Low_complexity Low_complexity 1 29 0 7 1410 466 196 75 0 chr4 108221175 108221282 -47408838 + PB1D9 SINE Alu 3 117 -3 7 1410 399 224 169 39 chr4 108221501 108221631 -47408489 + B1F2 SINE Alu 2 148 -1 7 1410 204 245 0 20 chr4 108221849 108221899 -47408221 + GA-rich Low_complexity Low_complexity 2 50 0 7 1410 313 288 0 0 chr4 108222063 108222129 -47407991 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 7 1410 332 289 98 16 chr4 108222115 108222230 -47407890 - PB1D10 SINE Alu -11 138 19 7 1410 252 337 128 0 chr4 108222160 108222246 -47407874 - ID_B1 SINE B4 -49 175 79 7 1410 519 267 126 40 chr4 108222481 108222680 -47407440 + B3 SINE B2 1 216 0 7 1410 305 224 45 0 chr4 108222972 108223039 -47407081 + ID4_ SINE ID 12 81 -2 7 1410 183 42 0 0 chr4 108223172 108223196 -47406924 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 7 1410 822 232 149 5 chr4 108223466 108223674 -47406446 - MTE2a LTR MaLR -10 369 132 7 1410 1335 155 362 0 chr4 108223746 108224029 -47406091 - ORR1B1 LTR MaLR -8 386 1 7 1410 244 239 0 13 chr4 108224485 108224552 -47405568 + PB1D10 SINE Alu 59 142 -7 7 1410 1211 226 136 19 chr4 108224699 108224750 -47405370 - MT2A LTR ERVL -1 532 456 7 1410 186 43 0 0 chr4 108224750 108224773 -47405347 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1410 1211 211 358 28 chr4 108224773 108225130 -47404990 - MT2A LTR ERVL -78 455 1 7 1410 183 156 0 0 chr4 108225218 108225250 -47404870 + CT-rich Low_complexity Low_complexity 4 35 0 7 1410 475 238 109 0 chr4 108225264 108225365 -47404755 - B1_Mus2 SINE Alu -33 114 3 7 1410 1162 83 14 0 chr4 108225406 108225551 -47404569 - B1_Mm SINE Alu 0 147 1 7 1410 886 154 247 6 chr4 108225949 108226119 -47404001 - B3 SINE B2 -4 212 2 7 1410 445 141 189 32 chr4 108226119 108226214 -47403906 - B1_Mur4 SINE Alu -1 149 40 7 1410 1393 178 241 12 chr4 108226334 108226653 -47403467 - ORR1B1 LTR MaLR -2 392 1 7 1410 728 22 36 115 chr4 108227103 108227676 -47402444 + (CTATA)n Simple_repeat Simple_repeat 1 527 0 7 1410 31 44 0 0 chr4 108227934 108227979 -47402141 + AT_rich Low_complexity Low_complexity 1 45 0 7 1410 2244 143 25 20 chr4 108228602 108229044 -47401076 - MusHAL1 LINE L1 -635 2077 1634 7 1410 399 206 0 4 chr4 108229017 108229099 -47401021 + L1_Mur1 LINE L1 2759 2842 -3044 7 1410 631 182 114 0 chr4 108229393 108229525 -47400595 - B1_Mus2 SINE Alu 0 147 1 7 1410 212 214 0 39 chr4 108230163 108230220 -47399900 - L2b LINE L2 0 3426 3328 7 1410 1156 192 56 0 chr4 108230809 108231022 -47399098 + URR1B DNA MER1_type 1 225 0 7 1410 193 306 78 56 chr4 108232117 108232259 -47397861 - MIRc SINE MIR -32 236 92 7 1410 21 57 0 0 chr4 108233052 108233087 -47397033 + AT_rich Low_complexity Low_complexity 1 35 0 7 1410 277 152 67 17 chr4 108233359 108233419 -47396701 + ID_B1 SINE B4 110 172 -52 7 1410 580 269 22 36 chr4 108233410 108233549 -47396571 + B1_Mur1 SINE Alu 6 142 -7 7 1410 359 194 69 0 chr4 108233555 108233627 -47396493 + ID_B1 SINE B4 143 219 -5 7 1410 607 221 173 0 chr4 108234109 108234236 -47395884 + B1_Mur1 SINE Alu 1 149 0 7 1410 554 305 53 0 chr4 108234434 108234585 -47395535 - B3A SINE B2 -25 173 15 7 1410 239 283 40 71 chr4 108235250 108235349 -47394771 - RSINE1 SINE B4 -33 132 37 7 1410 364 320 51 118 chr4 108235507 108235702 -47394418 + B3A SINE B2 1 182 -16 7 1410 820 126 72 22 chr4 108235763 108235901 -47394219 - B1_Mus1 SINE Alu 0 148 4 7 1410 283 184 102 0 chr4 108237143 108237192 -47392928 - PB1D7 SINE Alu -66 54 1 7 1410 593 294 196 6 chr4 108238137 108238473 -47391647 + MTD LTR MaLR 18 417 -2 7 1410 305 308 53 30 chr4 108238473 108238607 -47391513 - B4A SINE B4 -117 175 41 7 1410 819 75 24 32 chr4 108238607 108238731 -47391389 + B1_Mus2 SINE Alu 1 123 -24 7 1410 515 250 97 28 chr4 108238811 108238955 -47391165 + B3A SINE B2 31 184 -14 7 1410 650 115 164 26 chr4 108238959 108239075 -47391045 + B1_Mm SINE Alu 1 132 -15 7 1410 378 0 0 0 chr4 108239192 108239234 -47390886 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1410 576 269 136 20 chr4 108239235 108239471 -47390649 - B4A SINE B4 -25 267 4 7 1410 207 0 0 0 chr4 108239630 108239653 -47390467 + (C)n Simple_repeat Simple_repeat 1 23 0 7 1410 558 191 30 45 chr4 108240722 108240854 -47389266 - B3 SINE B2 -86 130 1 7 1410 531 227 91 30 chr4 108241434 108241566 -47388554 + B1_Mur2 SINE Alu 1 140 -7 7 1410 573 217 56 19 chr4 108241830 108241938 -47388182 - PB1D9 SINE Alu -7 113 2 7 1410 6365 30 4 1 chr4 108243026 108243727 -47386393 + L1Md_F2 LINE L1 5868 6570 -12 7 1410 1306 124 6 0 chr4 108243750 108243928 -47386192 - B2_Mm1a SINE B2 -14 179 1 7 1410 631 206 137 0 chr4 108244078 108244209 -47385911 + B3A SINE B2 2 150 -48 7 1410 222 231 215 0 chr4 108244204 108244269 -47385851 + RSINE1 SINE B4 81 159 -6 7 1410 794 289 46 25 chr4 108244412 108244653 -47385467 - B4A SINE B4 -43 249 4 7 1410 293 230 170 57 chr4 108244718 108244824 -47385296 - PB1D9 SINE Alu -1 119 2 7 1410 358 299 19 94 chr4 108244884 108245043 -47385077 - RSINE1 SINE B4 -15 150 4 7 1410 346 296 57 0 chr4 108245600 108245688 -47384432 - BC1_Mm scRNA scRNA -57 95 3 7 1410 256 273 70 10 chr4 108245910 108245923 -47384197 + B3 SINE B2 9 21 -195 7 1410 1286 112 11 0 chr4 108245923 108246101 -47384019 + B2_Mm1t SINE B2 1 180 -13 7 1410 283 128 336 3 chr4 108246101 108246229 -47383891 + B2_Mm2 SINE B2 22 195 0 7 1410 386 314 17 91 chr4 108246446 108246621 -47383499 + RSINE1 SINE B4 2 163 -2 7 1410 29 47 0 0 chr4 108246629 108246672 -47383448 + AT_rich Low_complexity Low_complexity 1 43 0 7 1410 226 268 0 0 chr4 108246771 108246827 -47383293 + MER20 DNA MER1_type 104 159 -60 7 1410 230 301 14 14 chr4 108247017 108247091 -47383029 + MER46C DNA MER2_type 254 327 -11 7 1410 613 281 11 68 chr4 108247221 108247397 -47382723 + ID_B1 SINE B4 13 178 -46 7 1410 360 279 26 43 chr4 108247305 108247421 -47382699 + PB1D7 SINE Alu 7 120 0 7 1410 536 51 38 0 chr4 108247450 108247529 -47382591 + L1Md_F2 LINE L1 6501 6582 0 7 1410 22 0 0 0 chr4 108248413 108248435 -47381685 + AT_rich Low_complexity Low_complexity 1 22 0 7 1410 234 0 0 0 chr4 108248899 108248925 -47381195 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 7 1410 218 229 21 0 chr4 108249314 108249362 -47380758 + (TATG)n Simple_repeat Simple_repeat 2 50 0 7 1410 647 209 26 0 chr4 108249887 108250002 -47380118 + B1_Mus2 SINE Alu 3 120 -27 7 1410 992 121 0 45 chr4 108250151 108250307 -47379813 + B1_Mur4 SINE Alu 2 150 0 7 1410 421 198 256 41 chr4 108250464 108250585 -47379535 + B1_Mur1 SINE Alu 1 147 -2 7 1410 192 97 0 0 chr4 108250781 108250812 -47379308 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 1410 1198 42 28 0 chr4 108250886 108251029 -47379091 + B1_Mm SINE Alu 1 147 0 7 1410 988 30 13 124 chr4 108251051 108251204 -47378916 + B1_Mm SINE Alu 1 136 -11 7 1410 348 24 0 0 chr4 108251226 108251267 -47378853 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 7 1410 581 106 239 34 chr4 108251273 108251390 -47378730 + B1_Mm SINE Alu 1 141 -6 7 1410 182 263 175 0 chr4 108251416 108251473 -47378647 + L2b LINE L2 3277 3343 -32 7 1410 582 187 114 0 chr4 108252711 108252834 -47377286 - B1_Mur3 SINE Alu -8 141 5 7 1410 294 151 57 0 chr4 108252875 108252928 -47377192 - B1_Mus2 SINE Alu -9 138 83 7 1410 241 160 80 0 chr4 108253124 108253174 -47376946 + L2a LINE L2 3368 3421 -5 7 1410 291 274 71 3 chr4 108253884 108254019 -47376101 - ORR1E LTR MaLR -14 405 271 7 1410 753 250 72 28 chr4 108254040 108254221 -47375899 - B3 SINE B2 -27 189 1 7 1410 647 203 88 22 chr4 108254586 108254722 -47375398 - B1_Mur2 SINE Alu -2 147 3 7 1410 3148 29 3 0 chr4 108255004 108255349 -47374771 + ORR1A0 LTR MaLR 1 346 0 7 1410 14263 50 35 19 chr4 108255349 108255991 -47374129 + ORR1A0-int LTR MaLR 1 662 -1130 7 1410 1681 47 5 0 chr4 108255991 108256183 -47373937 + B2_Mm1t SINE B2 1 193 0 7 1410 14263 50 35 19 chr4 108256183 108257304 -47372816 + ORR1A0-int LTR MaLR 663 1792 0 7 1410 988 80 27 5 chr4 108257304 108257474 -47372646 + ORR1A0 LTR MaLR 1 204 -190 7 1410 527 240 8 40 chr4 108257604 108257730 -47372390 - B1_Mur1 SINE Alu -1 148 27 7 1410 472 265 101 45 chr4 108258262 108258440 -47371680 - B3 SINE B2 -6 210 23 7 1410 244 275 118 9 chr4 108258442 108258552 -47371568 + Charlie2a DNA MER1_type 648 769 -2092 7 1410 249 40 39 39 chr4 108258608 108258660 -47371460 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 7 1410 438 292 0 165 chr4 108258660 108258836 -47371284 - B1_Mur3 SINE Alu 0 149 3 7 1410 807 302 0 5 chr4 108258836 108258890 -47371230 - B4 SINE B4 -205 87 35 7 1410 613 198 19 0 chr4 108258890 108258996 -47371124 + ETnERV2-int LTR ERVK 7081 7188 -218 7 1410 1381 271 86 25 chr4 108259436 108259708 -47370412 - RLTR12B LTR ERVK 0 568 267 8 1410 267 104 0 0 chr4 108259708 108259756 -47370364 + (CCTG)n Simple_repeat Simple_repeat 1 48 0 8 1410 1381 265 87 19 chr4 108259756 108260004 -47370116 - RLTR12B LTR ERVK -262 266 6 8 1410 1907 95 196 26 chr4 108260239 108260369 -47369751 - RLTR8 LTR ERVK 0 365 222 8 1410 413 91 30 0 chr4 108260369 108260435 -47369685 + (CATA)n Simple_repeat Simple_repeat 2 69 0 8 1410 1907 95 196 26 chr4 108260435 108260616 -47369504 - RLTR8 LTR ERVK -144 221 1 8 1410 372 22 0 0 chr4 108260704 108260749 -47369371 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1410 261 0 0 0 chr4 108260749 108260777 -47369343 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1410 735 134 33 8 chr4 108260777 108260897 -47369223 - B1_Mur4 SINE Alu -22 128 6 8 1410 848 184 0 26 chr4 108261024 108261175 -47368945 + B1_Mm SINE Alu 1 147 0 8 1410 1348 104 11 6 chr4 108261402 108261585 -47368535 - B2_Mm1t SINE B2 -9 184 1 8 1410 811 285 40 34 chr4 108262127 108262425 -47367695 - Lx8 LINE L1 -214 7259 6960 8 1410 198 71 0 0 chr4 108262516 108262544 -47367576 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1410 360 59 0 0 chr4 108262544 108262595 -47367525 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1410 449 204 9 72 chr4 108262595 108262706 -47367414 - B4A SINE B4 -187 105 2 8 1410 699 270 89 5 chr4 108262947 108263137 -47366983 + B3 SINE B2 8 213 -3 8 1410 216 0 0 0 chr4 108263662 108263686 -47366434 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1410 1297 41 0 0 chr4 108263686 108263831 -47366289 - B1_Mus2 SINE Alu 0 147 3 8 1410 270 0 0 0 chr4 108264657 108264687 -47365433 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1410 283 342 26 51 chr4 108264836 108264953 -47365167 - PB1D7 SINE Alu -6 114 1 8 1410 1295 107 42 21 chr4 108265014 108265205 -47364915 - B2_Mm2 SINE B2 0 195 1 8 1410 625 271 122 20 chr4 108265273 108265469 -47364651 + B3 SINE B2 1 216 0 8 1411 875 149 43 0 chr4 108265496 108265637 -47364483 + B1_Mur2 SINE Alu 3 149 0 8 1411 181 353 41 32 chr4 108265680 108265803 -47364317 + MIR SINE MIR 66 189 -73 8 1411 874 224 209 68 chr4 108266634 108266989 -47363131 + MTD LTR MaLR 1 405 -14 8 1411 337 267 12 7 chr4 108267154 108267238 -47362882 + B1_Mus1 SINE Alu 2 79 -70 8 1411 531 276 138 0 chr4 108267456 108267608 -47362512 + ID_B1 SINE B4 3 175 -49 8 1411 364 189 233 0 chr4 108267636 108267726 -47362394 + PB1D9 SINE Alu 2 112 -8 8 1411 376 294 157 7 chr4 108268285 108268566 -47361554 - L1ME1 LINE L1 -154 6025 5703 8 1411 495 99 0 0 chr4 108268675 108268756 -47361364 - L1Md_F2 LINE L1 0 6582 6502 8 1411 685 137 128 0 chr4 108268760 108268877 -47361243 - B1_Mus2 SINE Alu 0 147 16 8 1411 278 258 61 102 chr4 108268794 108268941 -47361179 - MT2B LTR ERVL -337 264 124 8 1411 917 84 0 0 chr4 108269075 108269194 -47360926 - B1_Mus1 SINE Alu -10 138 20 8 1411 376 209 40 90 chr4 108269110 108269210 -47360910 - MT2B LTR ERVL -344 257 163 8 1411 304 264 87 48 chr4 108269480 108269628 -47360492 + ID4_ SINE ID 6 147 -5 8 1411 455 219 115 0 chr4 108270340 108270436 -47359684 + PB1D10 SINE Alu 5 111 -6 8 1411 1176 89 0 0 chr4 108270583 108270729 -47359391 - B1_Mus2 SINE Alu 0 147 2 8 1411 1293 163 134 34 chr4 108270863 108271322 -47358798 - RMER19C LTR ERVK 0 611 12 8 1411 1214 54 0 39 chr4 108271609 108271762 -47358358 + B1_Mm SINE Alu 1 147 0 8 1411 249 222 0 36 chr4 108272876 108272932 -47357188 - PB1 SINE Alu 0 127 74 8 1411 692 304 25 0 chr4 108273656 108273817 -47356303 + B3 SINE B2 1 165 -51 8 1411 207 0 0 0 chr4 108273817 108273840 -47356280 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1411 604 297 38 21 chr4 108273840 108273864 -47356256 + B3A SINE B2 166 189 -9 8 1411 379 194 21 0 chr4 108274080 108274173 -47355947 + (TATG)n Simple_repeat Simple_repeat 2 96 0 8 1411 7235 43 40 1 chr4 108274749 108275572 -47354548 + RLTR13A LTR ERVK 1 855 0 8 1411 553 278 176 13 chr4 108276206 108276359 -47353761 + ID_B1 SINE B4 37 214 -10 8 1411 284 276 40 72 chr4 108277347 108277472 -47352648 - RMER13A LTR ERVK -211 697 577 8 1411 539 308 110 75 chr4 108277517 108277889 -47352231 - RMER13A LTR ERVK -474 386 2 8 1411 188 339 51 0 chr4 108278485 108278544 -47351576 - L2b LINE L2 -57 3318 3257 8 1411 244 245 57 0 chr4 108279001 108279054 -47351066 - L2b LINE L2 -7 3368 3313 8 1411 304 304 103 8 chr4 108279098 108279224 -47350896 + B1_Mur1 SINE Alu 2 139 -10 8 1411 677 201 49 30 chr4 108279759 108279923 -47350197 + B2_Mm2 SINE B2 3 169 -26 8 1411 328 217 59 24 chr4 108280240 108280325 -47349795 + PB1D10 SINE Alu 28 115 -2 8 1411 8338 30 5 0 chr4 108280374 108281347 -47348773 - RLTR13A3 LTR ERVK 0 978 1 8 1411 2166 181 50 84 chr4 108281469 108282001 -47348119 - RMER12B LTR ERVK 0 1404 891 8 1411 2330 164 97 35 chr4 108282001 108282487 -47347633 - RMER20A LTR ERVK 0 516 1 8 1411 3567 158 187 30 chr4 108282487 108282874 -47347246 - RMER12B LTR ERVK -521 883 456 8 1411 1253 83 72 0 chr4 108282874 108283054 -47347066 - B2_Mm1t SINE B2 0 193 1 8 1411 3567 158 187 30 chr4 108283054 108283426 -47346694 - RMER12B LTR ERVK -949 455 1 8 1411 391 216 40 30 chr4 108283591 108283691 -47346429 - B1_Mur2 SINE Alu 0 149 49 8 1411 276 30 0 0 chr4 108283962 108283995 -47346125 + (CATA)n Simple_repeat Simple_repeat 4 36 0 8 1411 538 254 85 72 chr4 108284003 108284296 -47345824 - RLTR12B LTR ERVK -215 313 17 8 1411 943 129 7 0 chr4 108284366 108284506 -47345614 + B2_Mm1t SINE B2 1 141 -52 8 1411 351 116 0 36 chr4 108284530 108284596 -47345524 + B2_Mm2 SINE B2 48 109 -107 8 1411 24 53 0 0 chr4 108284603 108284641 -47345479 + AT_rich Low_complexity Low_complexity 1 38 0 8 1411 665 242 0 15 chr4 108285050 108285184 -47344936 + B1F SINE Alu 3 134 -15 8 1411 456 285 73 10 chr4 108285216 108285367 -47344753 + B3A SINE B2 21 174 -42 8 1411 236 93 0 44 chr4 108285432 108285477 -47344643 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1411 189 94 0 0 chr4 108285779 108285811 -47344309 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1411 517 259 65 41 chr4 108285899 108286068 -47344052 + ID_B1 SINE B4 52 224 0 8 1411 532 254 10 13 chr4 108286228 108286366 -47343754 + B1F SINE Alu 10 145 -4 8 1411 1160 68 0 7 chr4 108286376 108286523 -47343597 + B1_Mus1 SINE Alu 3 148 0 8 1411 184 111 22 22 chr4 108286523 108286559 -47343561 + A-rich Low_complexity Low_complexity 14 50 0 8 1411 339 196 2 78 chr4 108286698 108286804 -47343316 - PB1D9 SINE Alu -8 112 13 8 1411 234 309 38 76 chr4 108287545 108287650 -47342470 + PB1D7 SINE Alu 19 119 -1 8 1411 532 261 34 0 chr4 108287712 108287831 -47342289 + ID_B1 SINE B4 65 187 -37 8 1411 375 297 28 30 chr4 108287826 108287978 -47342142 - MTD LTR MaLR -14 405 205 8 1411 243 191 14 87 chr4 108287967 108288036 -47342084 + B1F SINE Alu 82 145 -4 8 1411 547 191 122 0 chr4 108288036 108288151 -47341969 - B1_Mur2 SINE Alu -8 141 13 8 1411 263 290 54 107 chr4 108288059 108288171 -47341949 - MT2B LTR ERVL -337 264 159 8 1411 425 242 67 22 chr4 108288380 108288515 -47341605 + B1F SINE Alu 1 141 -8 8 1411 657 229 106 5 chr4 108288653 108288842 -47341278 - B3 SINE B2 -7 209 2 8 1411 428 270 144 7 chr4 108288932 108289085 -47341035 + B3A SINE B2 1 174 -24 8 1411 666 235 3 73 chr4 108289125 108289312 -47340808 + B3A SINE B2 36 213 -3 8 1411 241 300 33 0 chr4 108289324 108289384 -47340736 + B4A SINE B4 6 67 -225 8 1411 231 114 0 0 chr4 108289558 108289593 -47340527 + (CATA)n Simple_repeat Simple_repeat 2 36 0 8 1411 280 147 44 0 chr4 108289599 108289667 -47340453 + L1_Rod LINE L1 5744 5814 -33 8 1411 388 280 21 11 chr4 108289808 108289902 -47340218 + B4A SINE B4 1 95 -197 8 1411 677 234 103 15 chr4 108289907 108290102 -47340018 + B3 SINE B2 3 214 -2 8 1411 857 157 15 0 chr4 108290168 108290302 -47339818 - B1_Mus1 SINE Alu -1 147 12 8 1411 582 290 37 98 chr4 108290426 108290671 -47339449 + B4A SINE B4 3 232 -60 8 1411 1368 88 11 0 chr4 108290821 108291003 -47339117 + B2_Mm2 SINE B2 2 185 -10 8 1411 563 286 104 0 chr4 108291391 108291583 -47338537 + ID_B1 SINE B4 8 219 -5 8 1411 438 219 12 0 chr4 108291585 108291667 -47338453 + B1_Mur4 SINE Alu 1 83 -67 8 1411 553 127 141 25 chr4 108291807 108291928 -47338192 - B1_Mur1 SINE Alu -7 142 8 8 1411 26 0 0 0 chr4 108292595 108292621 -47337499 + GC_rich Low_complexity Low_complexity 1 26 0 8 1411 547 236 51 84 chr4 108293551 108293693 -47336427 + MER3 DNA MER1_type 1 139 -70 8 1411 883 9 0 0 chr4 108293713 108293819 -47336301 - B1_Mus2 SINE Alu -40 107 2 8 1411 507 189 0 159 chr4 108293819 108293863 -47336257 - MT2B LTR ERVL -445 156 136 8 1411 593 256 191 0 chr4 108294259 108294427 -47335693 + B3 SINE B2 3 202 -14 8 1411 449 255 167 9 chr4 108294500 108294710 -47335410 + L1MB3 LINE L1 5937 6179 -4 8 1411 504 120 504 7 chr4 108294715 108294858 -47335262 + B3 SINE B2 1 214 -2 8 1411 375 253 99 0 chr4 108294880 108294971 -47335149 + PB1D10 SINE Alu 12 111 -9 8 1411 475 327 26 42 chr4 108295172 108295378 -47334742 - ID_B1 SINE B4 -13 279 73 8 1411 310 318 35 0 chr4 108295408 108295493 -47334627 - B1F1 SINE Alu -61 88 1 8 1411 240 318 0 16 chr4 108295552 108295616 -47334504 - B1F1 SINE Alu -40 109 47 8 1411 413 223 157 21 chr4 108295638 108295802 -47334318 - B3A SINE B2 -10 185 2 9 1411 624 279 74 12 chr4 108295842 108296005 -47334115 + B3 SINE B2 35 207 -9 9 1411 235 212 90 15 chr4 108296655 108296722 -47333398 + MIRb SINE MIR 36 107 -161 9 1411 897 199 101 11 chr4 108301440 108301628 -47328492 - B3 SINE B2 -11 205 1 9 1411 392 225 0 75 chr4 108301893 108302013 -47328107 + PB1D7 SINE Alu 1 111 -9 9 1411 728 217 73 24 chr4 108303412 108303604 -47326516 + B3A SINE B2 6 207 -9 9 1411 419 239 26 60 chr4 108303604 108303720 -47326400 - PB1D9 SINE Alu -5 115 4 9 1411 566 270 73 39 chr4 108303720 108303731 -47326389 + B3 SINE B2 208 216 0 9 1411 399 165 4 30 chr4 108303847 108303939 -47326181 + B1_Mur1 SINE Alu 26 140 -9 9 1411 313 41 61 0 chr4 108304895 108304944 -47325176 + B1_Mus2 SINE Alu 96 147 0 9 1411 300 137 0 0 chr4 108304947 108304998 -47325122 + (A)n Simple_repeat Simple_repeat 1 51 0 9 1411 1271 112 16 0 chr4 108305007 108305194 -47324926 + B2_Mm2 SINE B2 1 190 -5 9 1411 849 149 28 28 chr4 108306858 108307003 -47323117 - B1_Mus2 SINE Alu -2 145 1 9 1411 318 177 217 94 chr4 108307298 108307404 -47322716 - PB1D7 SINE Alu -1 119 1 9 1411 213 154 0 0 chr4 108308105 108308144 -47321976 + T-rich Low_complexity Low_complexity 1 39 0 9 1411 1252 47 0 0 chr4 108308151 108308299 -47321821 - B1_Mus1 SINE Alu 0 148 1 9 1411 1075 94 135 0 chr4 108308713 108308883 -47321237 + B2_Mm2 SINE B2 1 193 -2 9 1411 601 246 16 0 chr4 108309027 108309149 -47320971 + ID_B1 SINE B4 93 216 -8 9 1411 501 188 0 0 chr4 108310068 108310148 -47319972 + B1_Mus2 SINE Alu 1 80 -67 9 1411 395 269 214 31 chr4 108310176 108310663 -47319457 + L1MC4 LINE L1 6773 7348 -694 9 1411 192 214 0 0 chr4 108311058 108311114 -47319006 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1411 189 182 114 0 chr4 108312187 108312231 -47317889 + MIRb SINE MIR 65 113 -155 9 1411 395 203 187 142 chr4 108312568 108312723 -47317397 - RSINE1 SINE B4 0 165 4 9 1411 896 27 18 0 chr4 108312822 108312933 -47317187 - B1_Mm SINE Alu 0 147 35 9 1411 358 238 113 47 chr4 108312855 108312961 -47317159 - MT2B LTR ERVL -337 264 152 9 1411 464 188 12 0 chr4 108313017 108313097 -47317023 - ID2 SINE ID -2 81 1 9 1411 961 177 85 10 chr4 108313349 108313549 -47316571 - B3 SINE B2 -1 215 1 9 1411 1219 63 37 79 chr4 108313703 108313825 -47316295 + B2_Mm2 SINE B2 1 110 -85 9 1411 1648 37 0 0 chr4 108313825 108314016 -47316104 - B2_Mm1a SINE B2 -1 192 2 9 1411 1219 63 37 79 chr4 108314016 108314083 -47316037 + B2_Mm2 SINE B2 111 182 -13 9 1411 216 0 0 0 chr4 108314083 108314107 -47316013 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1411 715 149 53 0 chr4 108314113 108314227 -47315893 + PB1D9 SINE Alu 1 120 0 9 1411 287 265 0 0 chr4 108315087 108315185 -47314935 + (CTGGGG)n Simple_repeat Simple_repeat 2 99 0 9 1411 420 237 35 17 chr4 108315186 108315302 -47314818 + PB1D9 SINE Alu 3 120 0 9 1411 428 223 29 0 chr4 108315308 108315394 -47314726 + PB1D9 SINE Alu 1 98 -52 9 1411 571 285 75 6 chr4 108315455 108315498 -47314622 + B4A SINE B4 24 67 -225 9 1411 768 152 7 35 chr4 108315498 108315641 -47314479 + B1_Mus1 SINE Alu 3 141 -7 9 1411 571 285 75 6 chr4 108315641 108315770 -47314350 + B4A SINE B4 68 208 -84 9 1411 276 237 16 48 chr4 108315859 108315921 -47314199 - RSINE1 SINE B4 -54 111 52 9 1411 375 244 22 0 chr4 108315921 108316011 -47314109 - Lx9 LINE L1 -474 7170 7079 9 1411 387 314 39 0 chr4 108316032 108316134 -47313986 - PB1D10 SINE Alu -11 106 1 9 1411 326 316 31 0 chr4 108316053 108316151 -47313969 - B4A SINE B4 -123 169 69 9 1411 1080 95 0 39 chr4 108316532 108316685 -47313435 - B1_Mm SINE Alu 0 147 1 9 1411 521 294 39 7 chr4 108316701 108316855 -47313265 - RSINE1 SINE B4 -4 161 3 9 1411 235 329 12 12 chr4 108317506 108317592 -47312528 + BC1_Mm scRNA scRNA 3 88 -64 9 1411 3933 72 10 43 chr4 108317616 108317789 -47312331 + L1VL4 LINE L1 427 586 -5716 9 1411 1695 26 0 0 chr4 108317789 108317981 -47312139 + B2_Mm1a SINE B2 2 193 0 9 1411 7179 63 5 21 chr4 108317981 108319157 -47310963 + L1VL4 LINE L1 587 1754 -1805 9 1411 207 0 0 0 chr4 108319157 108319180 -47310940 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1411 1443 60 11 0 chr4 108319180 108319362 -47310758 - B2_Mm1t SINE B2 -9 184 1 9 1411 7179 60 4 15 chr4 108319362 108319458 -47310662 + L1VL4 LINE L1 1755 1842 -1717 9 1411 241 35 0 0 chr4 108319454 108319483 -47310637 + L1_Mur1 LINE L1 5088 5116 -770 9 1411 6946 101 44 4 chr4 108319501 108320511 -47309609 + Lx2 LINE L1 5587 6638 -359 9 1411 1333 141 22 0 chr4 108320511 108320738 -47309382 + Lx2 LINE L1 6766 6997 0 9 1411 30 0 0 0 chr4 108320742 108320772 -47309348 + AT_rich Low_complexity Low_complexity 1 30 0 9 1411 391 204 45 0 chr4 108321004 108321106 -47309014 - PB1D9 SINE Alu -1 116 4 9 1411 240 242 27 96 chr4 108321047 108321120 -47309000 - MT2B LTR ERVL -382 219 152 9 1411 475 280 0 33 chr4 108321145 108321267 -47308853 + RSINE1 SINE B4 2 119 -46 9 1411 634 181 0 65 chr4 108321578 108321702 -47308418 + B1F SINE Alu 33 148 -1 9 1411 229 304 25 12 chr4 108321704 108321784 -47308336 - L2 LINE L2 -523 2896 2816 9 1411 442 259 129 29 chr4 108321838 108322009 -47308111 - L2 LINE L2 -738 2681 2494 9 1411 747 236 55 75 chr4 108322218 108322419 -47307701 + B3A SINE B2 1 197 -1 9 1411 1389 89 5 5 chr4 108322442 108322635 -47307485 + B2_Mm2 SINE B2 2 194 -1 9 1411 243 39 98 0 chr4 108323353 108323404 -47306716 + (TTTTG)n Simple_repeat Simple_repeat 4 59 0 9 1411 1254 48 0 0 chr4 108323404 108323551 -47306569 - B1_Mus2 SINE Alu 0 147 1 9 1411 674 221 49 28 chr4 108323609 108323753 -47306367 + B1F2 SINE Alu 3 149 0 9 1411 315 198 55 20 chr4 108323796 108323881 -47306239 + ORR1D1 LTR MaLR 1 85 -299 9 1411 231 36 0 0 chr4 108323889 108323917 -47306203 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 1411 990 87 188 24 chr4 108323918 108323930 -47306190 - B2_Mm2 SINE B2 -2 193 183 9 1411 1239 35 7 0 chr4 108323930 108324075 -47306045 - B1_Mm SINE Alu -1 146 1 9 1411 990 87 188 24 chr4 108324075 108324227 -47305893 - B2_Mm2 SINE B2 -13 182 2 9 1411 351 233 93 143 chr4 108324244 108324384 -47305736 - RSINE1 SINE B4 -2 163 31 9 1411 21 36 0 0 chr4 108324422 108324450 -47305670 + AT_rich Low_complexity Low_complexity 1 28 0 9 1411 332 227 35 26 chr4 108324450 108324563 -47305557 + (TG)n Simple_repeat Simple_repeat 1 114 0 9 1411 228 297 48 19 chr4 108324563 108324666 -47305454 - B3 SINE B2 -13 203 98 9 1411 352 261 159 0 chr4 108324866 108324954 -47305166 + ID_B1 SINE B4 117 218 -6 9 1411 286 185 0 58 chr4 108324974 108325043 -47305077 + Lx8 LINE L1 7407 7471 -2 9 1411 644 244 58 13 chr4 108325088 108325242 -47304878 - RSINE1 SINE B4 -2 163 3 9 1411 561 246 36 0 chr4 108325294 108325432 -47304688 + B1F1 SINE Alu 1 143 -6 9 1411 857 216 66 10 chr4 108325442 108325638 -47304482 + B3 SINE B2 4 210 -6 9 1411 25 51 0 0 chr4 108325643 108325682 -47304438 + AT_rich Low_complexity Low_complexity 1 39 0 9 1411 668 260 16 101 chr4 108325803 108325991 -47304129 + ID_B1 SINE B4 38 209 -15 9 1411 456 262 7 31 chr4 108326240 108326357 -47303763 + B1_Mur1 SINE Alu 30 148 -1 9 1411 474 301 87 70 chr4 108326491 108326777 -47303343 + MLT1G LTR MaLR 107 497 -94 9 1411 1456 75 37 0 chr4 108326777 108326964 -47303156 + B2_Mm2 SINE B2 1 194 -1 9 1411 474 315 129 94 chr4 108326964 108327062 -47303058 + MLT1G LTR MaLR 498 591 0 9 1411 602 127 0 38 chr4 108327066 108327172 -47302948 + B1_Mur3 SINE Alu 48 149 0 9 1411 9582 91 16 25 chr4 108327174 108328723 -47301397 + Lx3_Mus LINE L1 5470 7006 -3 9 1411 416 243 71 19 chr4 108329083 108329204 -47300916 - PB1 SINE Alu 0 117 1 9 1411 367 209 219 0 chr4 108329298 108329403 -47300717 - ID_B1 SINE B4 -16 208 81 9 1411 27 92 0 0 chr4 108329832 108329908 -47300212 + AT_rich Low_complexity Low_complexity 1 76 0 9 1411 346 278 96 3 chr4 108329930 108330091 -47300029 + MER58A DNA MER1_type 37 213 -11 9 1411 756 201 7 20 chr4 108330256 108330403 -47299717 - B1_Mur2 SINE Alu 0 149 5 9 1411 572 235 69 0 chr4 108330444 108330627 -47299493 + B4A SINE B4 1 225 -67 9 1411 677 234 8 8 chr4 108330630 108330759 -47299361 + RSINE1 SINE B4 2 130 -35 9 1411 219 69 0 0 chr4 108330781 108330810 -47299310 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1411 962 132 28 0 chr4 108331013 108331157 -47298963 - B1_Mus1 SINE Alu 0 148 1 9 1411 222 220 0 0 chr4 108331749 108331808 -47298312 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 9 1411 181 275 99 92 chr4 108332026 108332178 -47297942 - L3 LINE CR1 -195 4294 4142 9 1411 29 0 0 0 chr4 108332178 108332207 -47297913 + AT_rich Low_complexity Low_complexity 1 29 0 9 1411 276 288 89 9 chr4 108332252 108332364 -47297756 - B3A SINE B2 -42 156 36 9 1411 386 226 84 35 chr4 108332371 108332513 -47297607 + B1_Mur3 SINE Alu 1 149 0 9 1411 237 182 0 0 chr4 108332535 108332579 -47297541 - B3A SINE B2 -153 45 2 9 1411 414 246 217 9 chr4 108332801 108332916 -47297204 + B1_Mur1 SINE Alu 2 140 -9 9 1411 592 208 229 11 chr4 108332938 108333113 -47297007 + B3 SINE B2 1 213 -3 9 1411 685 200 0 97 chr4 108333501 108333549 -47296571 - B1_Mur1 SINE Alu -9 140 96 9 1411 1361 29 105 0 chr4 108333549 108333721 -47296399 - B2_Mm1a SINE B2 -2 191 2 9 1411 685 200 0 97 chr4 108333721 108333827 -47296293 - B1_Mur1 SINE Alu -54 95 1 9 1411 236 297 53 42 chr4 108334219 108334314 -47295806 + PB1D7 SINE Alu 22 117 -3 9 1411 1022 232 19 5 chr4 108334746 108334954 -47295166 - B3 SINE B2 0 216 6 9 1411 884 177 14 0 chr4 108335040 108335187 -47294933 - B1_Mur4 SINE Alu -1 149 1 1 1411 2058 142 84 3 chr4 108335249 108335612 -47294508 + ORR1C2 LTR MaLR 1 384 0 1 1411 226 170 19 0 chr4 108335615 108335668 -47294452 - L1M4 LINE L1 -970 5333 5280 1 1411 262 302 53 53 chr4 108335673 108335697 -47294423 + YREP_Mm Unknown Unknown 162 294 -1518 1 1411 427 219 73 37 chr4 108335697 108335806 -47294314 - ID_B1 SINE B4 -8 216 104 1 1411 315 318 96 22 chr4 108336181 108336316 -47293804 - L1M4 LINE L1 -1199 4947 4803 1 1411 262 320 95 8 chr4 108336462 108336588 -47293532 - ID_B1 SINE B4 -62 162 26 1 1411 276 243 27 67 chr4 108336712 108336787 -47293333 - B3A SINE B2 -119 79 8 1 1411 384 199 133 161 chr4 108336794 108336974 -47293146 - B3 SINE B2 0 216 15 1 1411 7661 67 6 6 chr4 108337453 108339152 -47290968 - L1_Mus1 LINE L1 0 6654 4874 1 1411 330 26 0 0 chr4 108339180 108339219 -47290901 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1411 637 73 21 0 chr4 108340129 108340225 -47289895 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1 1411 447 259 26 9 chr4 108340234 108340347 -47289773 - PB1D10 SINE Alu 0 117 3 1 1411 1385 197 63 58 chr4 108340612 108340819 -47289301 - ORR1C2 LTR MaLR 0 384 172 1 1411 705 87 0 0 chr4 108340819 108340934 -47289186 + (CGAGA)n Simple_repeat Simple_repeat 2 116 0 1 1411 1385 197 63 58 chr4 108340934 108341108 -47289012 - ORR1C2 LTR MaLR -213 171 2 1 1411 2388 142 47 33 chr4 108341225 108341677 -47288443 + RMER6B LTR ERVK 2 459 -2 1 1411 10648 131 54 40 chr4 108341689 108342402 -47287718 + MYSERV6-int LTR ERVK 2 730 -8229 1 1411 1401 86 0 5 chr4 108342402 108342590 -47287530 + B2_Mm2 SINE B2 2 188 -7 1 1411 10648 131 54 40 chr4 108342590 108343870 -47286250 + MYSERV6-int LTR ERVK 731 2022 -6937 1 1411 1376 153 65 7 chr4 108343889 108344179 -47285941 + MYSERV6-int LTR ERVK 4391 4697 -4262 1 1411 744 92 35 14 chr4 108344261 108344404 -47285716 + MYSERV6-int LTR ERVK 4849 4994 -3965 1 1411 296 183 200 0 chr4 108344404 108344464 -47285656 + B1_Mur4 SINE Alu 1 72 -78 1 1411 278 202 121 103 chr4 108344409 108344494 -47285626 + MT2B LTR ERVL 170 256 -345 1 1411 235 224 20 0 chr4 108344494 108344543 -47285577 + B1_Mur4 SINE Alu 1 50 -100 1 1411 2071 133 3 12 chr4 108344546 108344881 -47285239 + MYSERV6-int LTR ERVK 5046 5377 -3582 1 1411 519 278 116 86 chr4 108345055 108345417 -47284703 - RMER13A LTR ERVK -392 468 96 1 1411 568 172 73 8 chr4 108345518 108345641 -47284479 + MYSERV6-int LTR ERVK 5376 5506 -3453 1 1411 1572 98 98 0 chr4 108345635 108345891 -47284229 + MYSERV6-int LTR ERVK 7472 7752 -1207 1 1411 1542 112 132 0 chr4 108345891 108346142 -47283978 + RMER6B LTR ERVK 20 303 -158 1 1411 653 236 16 58 chr4 108346272 108346515 -47283605 + Lx7 LINE L1 7447 7679 -17 1 1411 1202 54 0 0 chr4 108346523 108346670 -47283450 + B1_Mus2 SINE Alu 1 147 0 1 1411 204 125 0 0 chr4 108346670 108346702 -47283418 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1411 1405 82 5 0 chr4 108347441 108347625 -47282495 - B2_Mm1t SINE B2 -7 186 2 1 1411 470 273 41 41 chr4 108347879 108348024 -47282096 - B1F SINE Alu -1 148 4 1 1411 1212 61 0 0 chr4 108348214 108348361 -47281759 + B1_Mus1 SINE Alu 2 148 0 1 1411 1018 241 33 43 chr4 108348741 108349055 -47281065 + MTE2b LTR MaLR 1 283 -96 1 1411 210 37 0 0 chr4 108349114 108349141 -47280979 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1411 288 185 19 0 chr4 108349152 108349206 -47280914 + PB1 SINE Alu 10 64 -63 1 1411 238 197 81 16 chr4 108349154 108349216 -47280904 + ID_B1 SINE B4 93 158 -66 1 1411 535 304 52 63 chr4 108349329 108349599 -47280521 + B4 SINE B4 1 267 -25 1 1411 216 86 0 0 chr4 108349650 108349685 -47280435 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1411 22 0 0 0 chr4 108350466 108350488 -47279632 + AT_rich Low_complexity Low_complexity 1 22 0 1 1411 1273 58 127 0 chr4 108350721 108350894 -47279226 + B2_Mm2 SINE B2 1 195 0 1 1411 1083 59 0 7 chr4 108350897 108351033 -47279087 + B1_Mm SINE Alu 1 135 -12 1 1411 628 221 154 12 chr4 108351251 108351420 -47278700 + B3 SINE B2 1 193 -23 1 1411 772 118 73 0 chr4 108351625 108351761 -47278359 - B1_Mur4 SINE Alu 0 150 5 1 1411 204 67 0 0 chr4 108351761 108351791 -47278329 + (C)n Simple_repeat Simple_repeat 1 30 0 1 1411 642 204 34 34 chr4 108351797 108351944 -47278176 - B1_Mur1 SINE Alu 0 149 3 1 1411 890 206 65 10 chr4 108351982 108352183 -47277937 - B3 SINE B2 0 216 5 1 1411 1392 207 183 22 chr4 108352236 108352597 -47277523 + MTD LTR MaLR 1 419 0 1 1411 516 77 13 0 chr4 108352773 108352851 -47277269 - B2_Mm1t SINE B2 -2 191 113 1 1411 231 36 0 0 chr4 108352987 108353015 -47277105 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 1 1411 456 19 0 0 chr4 108353026 108353079 -47277041 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1411 229 228 53 0 chr4 108353870 108353927 -47276193 - B3A SINE B2 -7 191 132 1 1411 583 245 86 26 chr4 108353898 108354049 -47276071 - B4 SINE B4 -4 288 129 1 1411 1078 155 132 0 chr4 108354070 108354283 -47275837 - RMER1B Other Other -187 879 639 1 1411 368 241 38 0 chr4 108354553 108354632 -47275488 + ID4_ SINE ID 2 83 0 1 1411 24 53 0 0 chr4 108355129 108355167 -47274953 + AT_rich Low_complexity Low_complexity 1 38 0 1 1411 555 267 113 151 chr4 108355224 108355515 -47274605 + B4A SINE B4 5 284 -8 1 1411 1416 54 43 5 chr4 108355724 108355909 -47274211 + B2_Mm2 SINE B2 2 193 -2 1 1411 839 261 39 71 chr4 108356251 108356452 -47273668 - B4A SINE B4 -19 273 82 1 1411 186 43 0 0 chr4 108356452 108356475 -47273645 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1411 839 261 39 71 chr4 108356475 108356554 -47273566 - B4A SINE B4 -211 81 2 1 1411 21 0 0 0 chr4 108357423 108357444 -47272676 + AT_rich Low_complexity Low_complexity 1 21 0 1 1411 23 54 0 0 chr4 108358594 108358631 -47271489 + AT_rich Low_complexity Low_complexity 1 37 0 1 1411 3092 189 111 61 chr4 108358667 108359450 -47270670 + RMER13A LTR ERVK 1 822 -38 1 1411 785 161 0 8 chr4 108359474 108359599 -47270521 + B1_Mur4 SINE Alu 20 143 -7 1 1411 1253 34 0 0 chr4 108359696 108359843 -47270277 + B1_Mm SINE Alu 1 147 0 1 1411 198 0 0 0 chr4 108359843 108359865 -47270255 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1411 817 214 45 20 chr4 108360496 108360696 -47269424 + B3 SINE B2 5 209 -7 1 1411 1169 54 0 39 chr4 108361234 108361388 -47268732 - B1_Mus1 SINE Alu 0 148 1 1 1411 907 152 7 40 chr4 108361959 108362110 -47268010 - B1_Mur2 SINE Alu -1 148 3 1 1411 781 243 116 0 chr4 108362127 108362316 -47267804 - ID_B1 SINE B4 -13 211 1 1 1411 250 281 172 0 chr4 108362460 108362588 -47267532 + L1MC1 LINE L1 6128 6277 -56 1 1411 566 221 147 16 chr4 108362602 108362731 -47267389 - B1_Mur2 SINE Alu -3 146 1 1 1411 1256 41 0 0 chr4 108362772 108362919 -47267201 + B1_Mus2 SINE Alu 1 147 0 1 1411 368 283 10 10 chr4 108363012 108363112 -47267008 + ID_B1 SINE B4 92 191 -33 1 1411 364 291 54 16 chr4 108363112 108363141 -47266979 + B1F1 SINE Alu 11 144 -5 1 1411 217 336 0 62 chr4 108363150 108363253 -47266867 + ID4_ SINE ID 2 98 -54 1 1411 976 89 12 0 chr4 108363268 108363410 -47266710 - B2_Mm2 SINE B2 -42 156 2 1 1411 1515 62 0 15 chr4 108363578 108363775 -47266345 - B2_Mm2 SINE B2 -1 194 1 1 1411 22 0 0 0 chr4 108365484 108365506 -47264614 + AT_rich Low_complexity Low_complexity 1 22 0 1 1411 201 128 0 49 chr4 108368576 108368617 -47261503 + A-rich Low_complexity Low_complexity 5 43 0 1 1411 422 257 52 26 chr4 108369426 108369542 -47260578 - PB1D7 SINE Alu -1 119 1 1 1411 241 359 42 25 chr4 108369561 108369681 -47260439 + MTE-int LTR MaLR 923 1044 -536 1 1411 409 284 21 10 chr4 108369714 108369810 -47260310 - B3A SINE B2 -16 182 86 1 1411 180 171 0 28 chr4 108369853 108369889 -47260231 - MIR3 SINE MIR -52 156 122 1 1411 4570 50 58 22 chr4 108370025 108370658 -47259462 + L1_Mus3 LINE L1 5983 6638 0 1 1411 519 236 61 92 chr4 108370676 108370839 -47259281 + RSINE1 SINE B4 2 159 -6 1 1411 24 0 0 0 chr4 108371155 108371179 -47258941 + AT_rich Low_complexity Low_complexity 1 24 0 1 1411 21 57 0 0 chr4 108371186 108371221 -47258899 + AT_rich Low_complexity Low_complexity 1 35 0 1 1411 1288 174 0 32 chr4 108371269 108371519 -47258601 + L1_Mur3 LINE L1 5529 5770 -110 1 1411 210 344 122 0 chr4 108371561 108371692 -47258428 + L2c LINE L2 2916 3062 -325 1 1411 186 273 69 83 chr4 108371932 108372004 -47258116 - L2b LINE L2 -1 3374 3304 1 1411 841 208 208 0 chr4 108372307 108372514 -47257606 + ORR1D1 LTR MaLR 1 250 -134 1 1411 344 274 47 13 chr4 108372624 108372775 -47257345 + ID_B1 SINE B4 2 224 0 1 1411 743 212 7 14 chr4 108372775 108372914 -47257206 + ID_B1 SINE B4 87 224 0 1 1411 558 305 23 0 chr4 108372924 108373055 -47257065 + B1F2 SINE Alu 9 142 -7 1 1411 5305 153 24 31 chr4 108373162 108374271 -47255849 + L1Md_T LINE L1 104 1205 -5411 1 1411 34853 31 0 0 chr4 108374277 108378694 -47251426 + L1Md_T LINE L1 1170 5586 -297 1 1411 8899 11 0 0 chr4 108378694 108379690 -47250430 + L1Md_T LINE L1 5587 6582 0 1 1411 6076 66 16 0 chr4 108379699 108380486 -47249634 + L1Md_T LINE L1 5783 6582 0 1 1411 184 243 0 0 chr4 108380530 108380567 -47249553 - MIRm SINE MIR -8 268 232 1 1411 4044 226 138 29 chr4 108380685 108381793 -47248327 - MMAR1 DNA Mariner 0 1286 58 1 1411 351 213 0 0 chr4 108381793 108381854 -47248266 + B3 SINE B2 1 61 -155 1 1411 442 199 20 34 chr4 108382002 108382136 -47247984 + L1MC2 LINE L1 5740 5867 -477 1 1411 440 269 81 43 chr4 108382202 108382412 -47247708 + L1MC2 LINE L1 5861 6078 -266 1 1411 302 256 156 0 chr4 108382496 108382586 -47247534 + L1MC2 LINE L1 6193 6296 -48 1 1411 198 0 0 0 chr4 108382666 108382688 -47247432 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1411 696 184 43 0 chr4 108382700 108382841 -47247279 - B1_Mur4 SINE Alu -1 149 3 1 1411 321 303 0 0 chr4 108382891 108382967 -47247153 + B4A SINE B4 18 93 -199 1 1411 328 159 31 16 chr4 108382966 108383030 -47247090 - B1_Mur4 SINE Alu -84 66 2 1 1411 234 91 0 0 chr4 108383305 108383338 -47246782 + (CAT)n Simple_repeat Simple_repeat 2 34 0 1 1411 301 270 18 108 chr4 108384096 108384166 -47245954 + L1MD LINE L1 3068 3120 -3026 1 1411 1152 82 0 0 chr4 108384166 108384313 -47245807 + B1_Mus1 SINE Alu 2 148 0 1 1411 301 270 18 108 chr4 108384313 108384408 -47245712 + L1MD LINE L1 3121 3218 -2928 1 1411 824 165 15 0 chr4 108384509 108384642 -47245478 + B1_Mur4 SINE Alu 1 135 -15 1 1411 429 70 0 0 chr4 108384666 108384723 -47245397 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 1 1411 711 204 21 0 chr4 108384909 108385051 -47245069 + B1_Mur2 SINE Alu 5 149 0 1 1411 1150 44 0 0 chr4 108385207 108385342 -47244778 + B1_Mus1 SINE Alu 2 136 -12 1 1411 270 56 0 0 chr4 108385343 108385379 -47244741 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1411 23 54 0 0 chr4 108385392 108385429 -47244691 + AT_rich Low_complexity Low_complexity 1 37 0 1 1411 468 91 0 0 chr4 108385921 108385987 -47244133 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1 1411 667 261 30 0 chr4 108386020 108386154 -47243966 - RSINE1 SINE B4 -26 139 2 1 1411 1614 171 55 14 chr4 108386364 108386654 -47243466 + MTD LTR MaLR 118 419 0 1 1411 1617 211 73 0 chr4 108386671 108387013 -47243107 + ORR1D2 LTR MaLR 4 370 0 1 1411 404 303 120 94 chr4 108387108 108387374 -47242746 + ORR1E LTR MaLR 19 291 -68 1 1411 254 247 11 0 chr4 108387853 108387946 -47242174 + (TATG)n Simple_repeat Simple_repeat 4 97 0 1 1411 700 297 68 29 chr4 108387953 108388234 -47241886 - B4A SINE B4 0 292 1 1 1411 186 287 90 60 chr4 108388604 108388704 -47241416 - L4 LINE RTE -688 1341 1239 1 1411 608 229 22 114 chr4 108388953 108389189 -47240931 + B3 SINE B2 1 215 -1 1 1411 892 219 35 10 chr4 108389396 108389594 -47240526 + B3 SINE B2 2 204 -12 1 1411 209 159 0 43 chr4 108389646 108389692 -47240428 + T-rich Low_complexity Low_complexity 2 45 0 1 1411 1231 48 0 0 chr4 108389694 108389841 -47240279 - B1_Mm SINE Alu 0 147 1 1 1411 22 35 0 0 chr4 108389846 108389875 -47240245 + AT_rich Low_complexity Low_complexity 1 29 0 1 1411 378 348 0 17 chr4 108389901 108390018 -47240102 + B1F2 SINE Alu 20 134 -15 1 1411 690 169 8 8 chr4 108392635 108392754 -47237366 + PB1D9 SINE Alu 1 119 -1 1 1411 262 273 57 17 chr4 108393006 108393107 -47237013 + PB1 SINE Alu 25 124 -3 1 1411 1124 62 0 14 chr4 108393217 108393365 -47236755 - B1_Mus2 SINE Alu 0 147 2 1 1411 664 244 56 75 chr4 108393390 108393603 -47236517 + ID_B1 SINE B4 1 209 -15 1 1411 684 210 4 9 chr4 108393608 108393847 -47236273 + GA-rich Low_complexity Low_complexity 1 237 0 1 1411 406 284 7 121 chr4 108393871 108394011 -47236109 + B4 SINE B4 5 128 -164 1 1411 561 15 0 0 chr4 108394275 108394341 -47235779 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 1411 219 88 0 0 chr4 108394343 108394377 -47235743 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1411 432 0 0 0 chr4 108394474 108394522 -47235598 + (TTTTG)n Simple_repeat Simple_repeat 5 52 0 1 1411 843 164 0 0 chr4 108394523 108394657 -47235463 - B1_Mur2 SINE Alu -11 138 5 1 1411 805 288 14 0 chr4 108395100 108395315 -47234805 + ID_B1 SINE B4 2 219 -5 1 1411 654 141 0 20 chr4 108395330 108395431 -47234689 + B1_Mus2 SINE Alu 9 107 -40 1 1411 396 0 0 0 chr4 108395589 108395633 -47234487 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1411 463 265 59 33 chr4 108395644 108395796 -47234324 - ID_B1 SINE B4 -14 210 55 1 1411 591 273 0 16 chr4 108395788 108395911 -47234209 - B1F2 SINE Alu -11 138 18 1 1411 1138 216 14 5 chr4 108396108 108396322 -47233798 - B3 SINE B2 0 216 1 1 1412 22 0 0 0 chr4 108396550 108396572 -47233548 + AT_rich Low_complexity Low_complexity 1 22 0 1 1412 516 281 155 9 chr4 108396675 108396894 -47233226 + MER2 DNA MER2_type 1 251 -94 1 1412 184 30 61 0 chr4 108397213 108397246 -47232874 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1 1412 1515 16 60 0 chr4 108397253 108397435 -47232685 - B2_Mm1a SINE B2 0 193 1 1 1412 1558 38 5 0 chr4 108397435 108397621 -47232499 - B2_Mm1t SINE B2 -5 188 2 1 1412 32 26 0 0 chr4 108397755 108397794 -47232326 + AT_rich Low_complexity Low_complexity 1 39 0 1 1412 286 212 0 175 chr4 108398064 108398144 -47231976 - B4A SINE B4 0 292 227 1 1412 279 0 0 0 chr4 108398145 108398176 -47231944 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1412 610 317 62 82 chr4 108398201 108398493 -47231627 - B4 SINE B4 0 292 7 1 1412 180 268 157 12 chr4 108398604 108398687 -47231433 + MIRb SINE MIR 172 266 -2 1 1412 845 147 28 7 chr4 108398987 108399131 -47230989 - B1_Mus1 SINE Alu 0 148 2 1 1412 233 325 42 34 chr4 108399312 108399473 -47230647 - L2c LINE L2 -17 3409 3223 1 1412 553 266 70 0 chr4 108399646 108399774 -47230346 + B3A SINE B2 2 138 -60 1 1412 409 347 32 16 chr4 108399771 108399897 -47230223 + B1F SINE Alu 13 140 -9 1 1412 6376 84 18 6 chr4 108400373 108401526 -47228594 + L1VL4 LINE L1 6 1174 -2385 1 1412 437 241 114 18 chr4 108401526 108401640 -47228480 - ID_B1 SINE B4 -59 165 41 1 1412 214 319 0 0 chr4 108401630 108401677 -47228443 + PB1D10 SINE Alu 13 59 -58 1 1412 189 0 0 0 chr4 108401677 108401698 -47228422 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1412 322 264 114 0 chr4 108401766 108401906 -47228214 + L1MB7 LINE L1 5863 6018 -166 1 1412 1603 26 0 21 chr4 108401919 108402112 -47228008 - B2_Mm1a SINE B2 -4 189 1 1 1412 834 256 51 0 chr4 108402134 108402329 -47227791 - B3 SINE B2 -9 207 3 1 1412 216 0 0 0 chr4 108402354 108402378 -47227742 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1412 767 179 30 0 chr4 108402381 108402515 -47227605 - B1_Mur4 SINE Alu -11 139 2 1 1412 421 215 30 69 chr4 108402529 108402688 -47227432 + L1MB7 LINE L1 6016 6179 -1 1 1412 294 29 0 0 chr4 108402733 108402768 -47227352 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1 1412 248 296 0 14 chr4 108403353 108403435 -47226685 + MIRc SINE MIR 59 139 -137 1 1412 185 0 0 39 chr4 108403437 108403463 -47226657 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1412 854 132 88 0 chr4 108403529 108403665 -47226455 - B1_Mur4 SINE Alu -2 148 1 1 1412 375 331 137 8 chr4 108404069 108404200 -47225920 + LFSINE_Vert SINE SINE 302 449 -10 1 1412 189 0 0 0 chr4 108404998 108405019 -47225101 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1412 463 296 63 0 chr4 108405168 108405310 -47224810 + MLT2B1 LTR ERVL 1 151 -369 1 1412 1619 11 0 21 chr4 108406074 108406263 -47223857 - B2_Mm1a SINE B2 -7 186 2 1 1412 445 291 14 29 chr4 108406347 108406481 -47223639 + B1F2 SINE Alu 2 133 -16 1 1412 2221 105 9 12 chr4 108406481 108406808 -47223312 + ORR1A3 LTR MaLR 1 326 0 1 1412 7136 63 34 10 chr4 108406822 108407818 -47222302 + L1_Mus4 LINE L1 5617 6636 0 1 1412 338 283 47 5 chr4 108407786 108407978 -47222142 + L1MCa LINE L1 1440 1639 -4869 1 1412 551 302 65 39 chr4 108408031 108408186 -47221934 + RSINE1 SINE B4 7 165 0 1 1412 616 233 31 0 chr4 108408202 108408365 -47221755 + L1MCa LINE L1 3409 3576 -2745 1 1412 312 341 46 51 chr4 108408537 108408732 -47221388 - ORR1E LTR MaLR -165 194 1 1 1412 2140 256 99 21 chr4 108408735 108409804 -47220316 + L1MCa LINE L1 3575 4765 -1556 1 1412 341 270 79 8 chr4 108409817 108409944 -47220176 + L1MCa LINE L1 5207 5342 -979 1 1412 307 223 82 31 chr4 108409948 108410045 -47220075 + PB1 SINE Alu 26 127 0 1 1412 373 387 6 82 chr4 108410241 108410424 -47219696 + B4 SINE B4 17 185 -107 1 1412 643 235 80 13 chr4 108410448 108410599 -47219521 + RSINE1 SINE B4 5 165 0 1 1412 294 250 0 0 chr4 108410630 108410678 -47219442 - B4A SINE B4 -120 172 125 1 1412 311 340 43 47 chr4 108411388 108411596 -47218524 + MIR SINE MIR 2 201 -67 1 1412 3369 33 10 0 chr4 108411596 108411988 -47218132 + MTA_Mm LTR MaLR 1 396 0 1 1412 301 352 50 84 chr4 108411988 108412018 -47218102 + MIRc SINE MIR 202 232 -36 1 1412 1103 224 5 0 chr4 108412177 108412387 -47217733 - B3 SINE B2 -5 211 1 1 1412 243 328 47 16 chr4 108412455 108412582 -47217538 + MIR SINE MIR 86 216 -46 1 1412 307 232 29 72 chr4 108412755 108412894 -47217226 + L1MB7 LINE L1 2728 2860 -3286 1 1412 706 270 45 11 chr4 108412899 108413075 -47217045 - ID_B1 SINE B4 0 224 43 1 1412 926 201 88 0 chr4 108413151 108413311 -47216809 + B3 SINE B2 1 167 -49 1 1412 321 89 0 0 chr4 108413311 108413356 -47216764 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1412 926 201 88 0 chr4 108413356 108413389 -47216731 + B3 SINE B2 168 210 -6 1 1412 255 216 78 0 chr4 108413404 108413455 -47216665 + B3 SINE B2 76 130 -86 1 1412 1224 34 7 0 chr4 108413523 108413669 -47216451 + B1_Mus2 SINE Alu 1 147 0 1 1412 761 182 45 0 chr4 108413680 108413812 -47216308 + B1_Mus1 SINE Alu 2 139 -9 1 1412 482 245 47 47 chr4 108413944 108414051 -47216069 - PB1D10 SINE Alu -10 107 1 1 1412 430 220 224 55 chr4 108414065 108414282 -47215838 + L1MB7 LINE L1 3038 3290 -2856 1 1412 1157 75 0 0 chr4 108414282 108414428 -47215692 + B1_Mm SINE Alu 2 147 0 1 1412 430 220 224 55 chr4 108414428 108414566 -47215554 + L1MB7 LINE L1 3291 3455 -2691 1 1412 356 319 101 0 chr4 108414566 108414704 -47215416 + RSINE1 SINE B4 2 153 -12 1 1412 430 220 224 55 chr4 108414704 108414727 -47215393 + L1MB7 LINE L1 3456 3480 -2666 1 1412 1466 247 107 67 chr4 108414723 108415098 -47215022 + L1MB7 LINE L1 3972 4380 -1766 1 1412 1356 66 38 6 chr4 108415098 108415281 -47214839 + B2_Mm2 SINE B2 1 189 -6 1 1412 1466 247 107 67 chr4 108415281 108415745 -47214375 + L1MB7 LINE L1 4381 4855 -1291 1 1412 1650 32 0 0 chr4 108415745 108415934 -47214186 - B2_Mm1t SINE B2 -3 190 2 1 1412 1466 247 107 67 chr4 108415934 108415957 -47214163 + L1MB7 LINE L1 4856 4869 -1277 1 1412 515 269 15 37 chr4 108415959 108416069 -47214051 - ORR1D2 LTR MaLR 0 370 264 1 1412 762 240 82 15 chr4 108416069 108416264 -47213856 + B3 SINE B2 3 210 -6 1 1412 925 266 109 0 chr4 108416293 108416541 -47213579 - ORR1D2 LTR MaLR -95 275 1 1 1412 344 216 126 0 chr4 108416609 108416720 -47213400 + L1MB7 LINE L1 4977 5101 -1045 1 1412 902 231 41 84 chr4 108416728 108417079 -47213041 + MT2B LTR ERVL 1 458 -143 1 1412 252 228 47 78 chr4 108417079 108417196 -47212924 + L1MB7 LINE L1 5479 5598 -580 1 1412 227 261 46 0 chr4 108417217 108417282 -47212838 + ID4 SINE ID 15 82 -1 1 1412 560 285 15 15 chr4 108417379 108417511 -47212609 + ID_B1 SINE B4 80 211 -13 1 1412 23 0 0 0 chr4 108417511 108417534 -47212586 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 297 270 32 0 chr4 108417681 108417741 -47212379 + B3A SINE B2 1 62 -136 1 1412 1174 283 88 88 chr4 108417741 108418342 -47211778 + RLTR26 LTR ERVK 1 601 -41 1 1412 211 200 59 44 chr4 108418325 108418393 -47211727 + B3 SINE B2 41 109 -107 1 1412 469 243 66 46 chr4 108418363 108418561 -47211559 + B3 SINE B2 21 216 0 1 1412 269 317 16 40 chr4 108418589 108418609 -47211511 + MT2B LTR ERVL 151 223 -378 1 1412 404 280 64 11 chr4 108418609 108418703 -47211417 + PB1D10 SINE Alu 6 104 -13 1 1412 269 317 16 40 chr4 108418703 108418714 -47211406 + MT2B LTR ERVL 224 272 -329 1 1412 544 213 45 39 chr4 108418866 108419022 -47211098 + L1MB7 LINE L1 6013 6169 -15 1 1412 712 208 33 99 chr4 108419194 108419407 -47210713 - B3 SINE B2 -17 199 1 1 1412 27 0 0 0 chr4 108419460 108419487 -47210633 + AT_rich Low_complexity Low_complexity 1 27 0 1 1412 507 274 15 118 chr4 108419541 108419744 -47210376 - B3A SINE B2 -16 182 1 1 1412 9409 133 41 13 chr4 108419756 108422427 -47207693 - Lx4B LINE L1 -1 7057 4323 1 1412 371 190 0 0 chr4 108422675 108422733 -47207387 + PB1D9 SINE Alu 1 58 -62 1 1412 863 238 8 101 chr4 108422717 108422955 -47207165 + MTD LTR MaLR 204 419 0 1 1412 844 165 102 18 chr4 108422955 108423115 -47207005 + MTD-int LTR MaLR 27 200 -1058 1 1412 775 121 286 50 chr4 108423115 108423297 -47206823 + URR1A DNA MER1_type 1 225 -1 1 1412 582 233 75 100 chr4 108423297 108423329 -47206791 + MTD-int LTR MaLR 195 212 -886 1 1412 369 214 36 0 chr4 108423306 108423390 -47206730 + MTC LTR MaLR 335 421 0 1 1412 641 213 14 14 chr4 108423432 108423575 -47206545 + B1_Mm SINE Alu 4 146 -1 1 1412 1087 81 0 0 chr4 108423596 108423732 -47206388 + B1_Mus1 SINE Alu 1 136 -12 1 1412 270 0 0 0 chr4 108423732 108423762 -47206358 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 1412 2134 125 3 15 chr4 108424308 108424641 -47205479 + ORR1A4 LTR MaLR 1 329 0 1 1412 389 215 125 31 chr4 108424761 108424857 -47205263 + PB1D7 SINE Alu 16 120 0 1 1412 21 0 0 0 chr4 108425382 108425403 -47204717 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 722 235 88 88 chr4 108425809 108425991 -47204129 + B3A SINE B2 1 182 -16 1 1412 33 43 0 0 chr4 108425994 108426041 -47204079 + AT_rich Low_complexity Low_complexity 1 47 0 1 1412 2197 202 103 8 chr4 108426086 108426570 -47203550 - MT2A LTR ERVL -3 530 1 1 1412 306 378 40 10 chr4 108426587 108426785 -47203335 + L1MC4 LINE L1 7167 7370 -672 1 1412 258 83 0 0 chr4 108427130 108427166 -47202954 - RLTR11A LTR ERVK -27 501 466 1 1412 300 164 18 0 chr4 108427412 108427467 -47202653 - RLTR11A LTR ERVK 0 528 473 1 1412 469 171 13 0 chr4 108427487 108427563 -47202557 - RLTR20D LTR ERVK 0 568 492 1 1412 315 269 39 0 chr4 108427564 108427642 -47202478 - RLTR20D LTR ERVK -353 215 135 1 1412 183 100 0 0 chr4 108427691 108427721 -47202399 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1412 403 280 61 46 chr4 108427762 108427893 -47202227 - B1F1 SINE Alu -7 142 10 1 1412 217 312 170 11 chr4 108428101 108428153 -47201967 - PB1 SINE Alu -7 120 69 1 1412 1596 161 94 44 chr4 108428153 108428516 -47201604 + ORR1C2 LTR MaLR 3 383 -1 1 1412 217 312 170 11 chr4 108428516 108428557 -47201563 - PB1 SINE Alu -59 68 13 1 1412 219 36 0 0 chr4 108428762 108428790 -47201330 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1412 238 331 188 35 chr4 108429207 108429520 -47200600 - L2a LINE L2 -21 3405 3045 1 1412 1285 116 0 5 chr4 108429520 108429711 -47200409 + B2_Mm2 SINE B2 4 193 -2 1 1412 238 331 188 35 chr4 108429711 108429823 -47200297 - L2a LINE L2 -382 3044 2915 1 1412 287 320 32 87 chr4 108430140 108430194 -47199926 - YREP_Mm Unknown Unknown -1450 362 218 1 1412 683 273 0 7 chr4 108430194 108430338 -47199782 + ID_B1 SINE B4 78 220 -4 1 1412 287 320 32 87 chr4 108430338 108430359 -47199761 - YREP_Mm Unknown Unknown -1450 217 156 1 1412 1027 110 14 0 chr4 108430359 108430505 -47199615 + B1_Mus1 SINE Alu 1 148 0 1 1412 677 199 56 21 chr4 108430568 108430712 -47199408 + B1_Mur4 SINE Alu 2 150 0 1 1412 315 0 0 0 chr4 108430916 108430951 -47199169 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1412 876 191 0 0 chr4 108431030 108431182 -47198938 + ORR1B1 LTR MaLR 192 343 -51 1 1412 1199 48 7 0 chr4 108431202 108431347 -47198773 + B1_Mm SINE Alu 2 147 0 1 1412 47 19 0 0 chr4 108431347 108431401 -47198719 + AT_rich Low_complexity Low_complexity 1 54 0 1 1412 443 303 179 6 chr4 108431401 108431557 -47198563 + B4A SINE B4 16 198 -94 1 1412 994 217 39 19 chr4 108431637 108431844 -47198276 + B3 SINE B2 5 215 -1 1 1412 557 261 79 74 chr4 108432111 108432326 -47197794 + Charlie1a DNA MER1_type 140 355 -1100 1 1412 328 314 7 117 chr4 108432325 108432462 -47197658 + PB1 SINE Alu 6 127 0 1 1412 237 237 40 0 chr4 108432482 108432544 -47197576 + ID4 SINE ID 15 83 0 1 1412 206 271 0 20 chr4 108432582 108432631 -47197489 - L2c LINE L2 -5 3382 3335 1 1412 205 163 91 23 chr4 108432616 108432660 -47197460 + L3 LINE CR1 3951 3997 -492 1 1412 1510 63 0 0 chr4 108432680 108432870 -47197250 + B2_Mm1a SINE B2 2 191 -2 1 1412 1097 102 0 0 chr4 108432911 108433058 -47197062 + B1_Mus1 SINE Alu 1 147 -1 1 1412 1236 35 0 0 chr4 108433064 108433209 -47196911 + B1_Mm SINE Alu 3 147 0 1 1412 264 154 0 0 chr4 108433209 108433261 -47196859 + A-rich Low_complexity Low_complexity 1 52 0 1 1412 300 111 0 0 chr4 108433267 108433312 -47196808 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 1 1412 440 295 46 20 chr4 108433513 108433665 -47196455 + LTR16B1 LTR ERVL 76 231 -249 1 1412 321 318 58 81 chr4 108434912 108435172 -47194948 + HERV16-int LTR ERVL 828 1081 -3915 1 1412 270 273 34 11 chr4 108435539 108435628 -47194492 + HERV16-int LTR ERVL 1690 1780 -3216 1 1412 296 295 26 0 chr4 108435811 108435889 -47194231 - MER2 DNA MER2_type -43 302 223 1 1412 1602 50 0 0 chr4 108435907 108436105 -47194015 + ORR1A2 LTR MaLR 122 319 -8 1 1412 3135 134 78 7 chr4 108436109 108436674 -47193446 + ORR1A2-int LTR MaLR 1 605 -1187 1 1412 732 166 24 73 chr4 108436628 108436835 -47193285 + MT2B LTR ERVL 153 287 -314 1 1412 389 190 62 21 chr4 108436730 108436875 -47193245 + ORR1A2-int LTR MaLR 717 867 -1096 1 1412 1507 80 67 0 chr4 108436867 108437091 -47193029 + ORR1A2-int LTR MaLR 1725 1963 0 1 1412 2151 69 4 0 chr4 108437091 108437366 -47192754 + ORR1A2 LTR MaLR 1 276 -51 1 1412 180 97 0 0 chr4 108437366 108437397 -47192723 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1412 522 144 28 28 chr4 108437397 108437504 -47192616 - MER2 DNA MER2_type -123 222 116 1 1412 451 104 0 72 chr4 108437506 108437589 -47192531 - URR1B DNA MER1_type 0 225 149 1 1412 287 345 119 0 chr4 108437588 108437672 -47192448 - MER2 DNA MER2_type -238 107 14 1 1412 1170 156 22 40 chr4 108437926 108438153 -47191967 - URR1B DNA MER1_type 0 225 3 1 1412 1307 231 130 3 chr4 108439122 108439430 -47190690 - MTD LTR MaLR -52 367 21 1 1412 209 33 33 0 chr4 108439430 108439460 -47190660 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1412 652 149 0 66 chr4 108439664 108439786 -47190334 + B1_Mur2 SINE Alu 36 149 0 1 1412 973 184 97 5 chr4 108439895 108440102 -47190018 - URR1A DNA MER1_type 0 226 1 1 1412 306 151 0 102 chr4 108440312 108440371 -47189749 + MTD LTR MaLR 5 57 -364 1 1412 352 126 146 22 chr4 108440347 108440436 -47189684 + RLTR25B LTR ERVK 410 509 -519 1 1412 807 65 0 0 chr4 108440371 108440478 -47189642 + B1_Mus2 SINE Alu 40 146 -1 1 1412 1317 232 125 10 chr4 108440437 108440789 -47189331 + MTD LTR MaLR 35 417 -2 1 1412 496 274 71 71 chr4 108441304 108441473 -47188647 + LTR16B1 LTR ERVL 25 193 -287 1 1412 1888 109 195 52 chr4 108441614 108441913 -47188207 + RMER4A LTR ERVK 3 343 -123 1 1412 966 110 18 0 chr4 108441913 108442077 -47188043 + (TC)n Simple_repeat Simple_repeat 2 168 0 1 1412 1888 109 195 52 chr4 108442077 108442183 -47187937 + RMER4A LTR ERVK 344 466 0 1 1412 269 356 89 0 chr4 108442205 108442350 -47187770 - MIR SINE MIR -89 179 7 1 1412 222 333 171 11 chr4 108442349 108442525 -47187595 + L3 LINE CR1 4144 4347 -142 1 1412 460 237 38 8 chr4 108442648 108442780 -47187340 - L1M4 LINE L1 -462 5722 5587 1 1412 1182 42 7 0 chr4 108443498 108443642 -47186478 + B1_Mm SINE Alu 1 145 -2 1 1412 221 0 0 33 chr4 108443650 108443680 -47186440 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 1 1412 4114 128 16 5 chr4 108443833 108444477 -47185643 - Lx2 LINE L1 0 6997 6347 1 1412 3970 97 51 0 chr4 108444480 108445090 -47185030 + Lx2 LINE L1 5701 6341 -656 1 1412 875 239 80 20 chr4 108445750 108445951 -47184169 + ID_B1 SINE B4 10 222 -2 1 1412 747 269 0 0 chr4 108445969 108446118 -47184002 + RSINE1 SINE B4 9 157 -8 1 1412 180 0 0 0 chr4 108446131 108446151 -47183969 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1412 347 277 57 38 chr4 108446345 108446450 -47183670 + PB1D7 SINE Alu 2 108 -12 1 1412 377 235 12 0 chr4 108446622 108446703 -47183417 - ID4 SINE ID 0 83 2 1 1412 307 292 104 0 chr4 108446712 108446808 -47183312 - PB1D10 SINE Alu -11 106 1 1 1412 22 35 0 0 chr4 108446918 108446947 -47183173 + AT_rich Low_complexity Low_complexity 1 29 0 1 1412 225 0 0 0 chr4 108447073 108447098 -47183022 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1412 630 45 0 0 chr4 108447157 108447245 -47182875 + L1_Mus4 LINE L1 6544 6631 -5 1 1412 549 52 0 49 chr4 108447251 108447332 -47182788 + B1_Mus2 SINE Alu 71 147 0 1 1412 1410 65 22 0 chr4 108447336 108447520 -47182600 + B2_Mm2 SINE B2 2 189 -6 1 1412 1597 251 114 25 chr4 108447730 108448368 -47181752 + L1MB8 LINE L1 5445 6139 -39 1 1412 487 248 34 17 chr4 108448711 108448830 -47181290 + ID_B1 SINE B4 87 207 -17 1 1412 272 330 48 29 chr4 108449184 108449287 -47180833 - MIRb SINE MIR -73 195 91 1 1412 273 292 0 0 chr4 108449289 108449354 -47180766 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 1 1412 868 148 62 47 chr4 108449383 108449575 -47180545 + B2_Mm2 SINE B2 1 195 0 1 1412 660 45 0 0 chr4 108449935 108450023 -47180097 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 1 1412 1085 76 17 6 chr4 108450023 108450185 -47179935 + B2_Mm2 SINE B2 27 195 0 1 1412 25 0 0 0 chr4 108451069 108451094 -47179026 + AT_rich Low_complexity Low_complexity 1 25 0 1 1412 25 0 0 0 chr4 108451852 108451877 -47178243 + AT_rich Low_complexity Low_complexity 1 25 0 1 1412 22 56 0 0 chr4 108453215 108453251 -47176869 + GC_rich Low_complexity Low_complexity 1 36 0 1 1412 28 79 0 0 chr4 108453435 108453498 -47176622 + GC_rich Low_complexity Low_complexity 1 63 0 1 1412 184 30 29 29 chr4 108453882 108453916 -47176204 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1412 201 39 0 0 chr4 108454273 108454299 -47175821 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1412 351 286 34 43 chr4 108454318 108454435 -47175685 + MIRb SINE MIR 22 137 -131 1 1412 678 47 0 0 chr4 108454596 108454682 -47175438 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1412 22 0 0 0 chr4 108454853 108454875 -47175245 + AT_rich Low_complexity Low_complexity 1 22 0 1 1412 387 0 0 0 chr4 108455073 108455116 -47175004 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1412 451 206 98 0 chr4 108455610 108455702 -47174418 + RSINE1 SINE B4 5 105 -60 1 1412 335 280 0 79 chr4 108456088 108456217 -47173903 + PB1 SINE Alu 1 120 -7 1 1412 23 0 0 0 chr4 108456471 108456494 -47173626 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 313 309 65 13 chr4 108456545 108456699 -47173421 + L2c LINE L2 3184 3345 -42 1 1412 371 257 145 35 chr4 108457043 108457188 -47172932 + RSINE1 SINE B4 5 165 0 1 1412 186 43 0 0 chr4 108457204 108457227 -47172893 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1412 1446 40 40 0 chr4 108457230 108457404 -47172716 + B2_Mm2 SINE B2 1 181 -14 1 1412 781 247 22 6 chr4 108457593 108457772 -47172348 - B3A SINE B2 -16 182 1 1 1412 476 299 44 44 chr4 108457934 108458116 -47172004 - B3A SINE B2 -16 182 1 1 1412 303 214 0 0 chr4 108458328 108458398 -47171722 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1412 23 33 0 0 chr4 108458404 108458434 -47171686 + AT_rich Low_complexity Low_complexity 1 30 0 1 1412 1302 93 16 0 chr4 108458434 108458616 -47171504 - B2_Mm2 SINE B2 -6 189 5 1 1412 1624 204 145 10 chr4 108458627 108459153 -47170967 - Lx9 LINE L1 -16 7628 6901 1 1412 452 262 31 6 chr4 108459204 108459324 -47170796 - L1MC4 LINE L1 -244 7798 7677 1 1412 869 148 7 14 chr4 108459324 108459468 -47170652 + B1_Mur1 SINE Alu 2 144 -5 1 1412 452 262 31 6 chr4 108459468 108459508 -47170612 - L1MC4 LINE L1 -366 7676 7636 1 1412 643 227 36 46 chr4 108459509 108459703 -47170417 + B3A SINE B2 1 192 -6 1 1412 1307 79 0 55 chr4 108459881 108460082 -47170038 - B2_Mm2 SINE B2 -3 192 3 1 1412 467 107 12 0 chr4 108460298 108460382 -47169738 + (TTTTG)n Simple_repeat Simple_repeat 1 85 0 1 1412 774 56 19 0 chr4 108460382 108460489 -47169631 - B1_Mm SINE Alu 0 147 39 1 1412 306 220 85 32 chr4 108460490 108460584 -47169536 - PB1 SINE Alu -2 125 27 1 1412 242 211 0 0 chr4 108460639 108460691 -47169429 - L1MC4 LINE L1 -804 7238 7187 1 1412 315 314 41 0 chr4 108460905 108461026 -47169094 - L1MC4 LINE L1 -1133 6909 6784 1 1412 232 299 61 70 chr4 108461026 108461037 -47169083 + MT2B2 LTR ERVL 154 214 -370 1 1412 377 292 10 10 chr4 108461037 108461134 -47168986 + PB1D10 SINE Alu 2 98 -19 1 1412 307 324 49 76 chr4 108461294 108461505 -47168615 - RSINE1 SINE B4 -7 285 64 1 1412 545 212 119 0 chr4 108461606 108461724 -47168396 + B1_Mus1 SINE Alu 2 133 -15 1 1412 373 165 11 66 chr4 108461776 108461867 -47168253 + Charlie1b DNA MER1_type 185 270 -253 1 1412 258 310 100 8 chr4 108461962 108462092 -47168028 - L2 LINE L2 -832 2587 2446 1 1412 342 312 75 19 chr4 108462068 108462228 -47167892 - MIRb SINE MIR -97 171 3 1 1412 801 211 0 21 chr4 108462450 108462595 -47167525 + B1_Mur4 SINE Alu 2 143 -7 1 1412 393 22 0 0 chr4 108462596 108462642 -47167478 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1412 756 207 194 6 chr4 108462686 108462866 -47167254 + B3 SINE B2 3 216 0 1 1412 686 117 99 0 chr4 108462898 108463009 -47167111 + B1_Mus1 SINE Alu 18 139 -9 1 1412 638 36 0 23 chr4 108463009 108463095 -47167025 + (GGGAGA)n Simple_repeat Simple_repeat 3 86 0 1 1412 357 168 53 0 chr4 108463106 108463201 -47166919 + GA-rich Low_complexity Low_complexity 2 101 0 1 1412 391 181 178 69 chr4 108463454 108463555 -47166565 - URR1B DNA MER1_type -113 112 1 1 1412 784 235 42 70 chr4 108463669 108463884 -47166236 - B3 SINE B2 -7 209 1 1 1412 839 63 145 30 chr4 108463914 108464045 -47166075 - B1_Mm SINE Alu -1 146 1 1 1412 637 232 0 96 chr4 108464053 108464210 -47165910 - ID_B1 SINE B4 0 224 83 1 1412 957 321 63 6 chr4 108464295 108464661 -47165459 + Tigger6a DNA MER2_type 1 387 -696 1 1412 514 267 0 28 chr4 108464733 108464841 -47165279 + RSINE1 SINE B4 44 148 -17 1 1412 1108 268 70 65 chr4 108464855 108465270 -47164850 + Tigger6a DNA MER2_type 457 873 -210 1 1412 637 266 95 4 chr4 108465280 108465522 -47164598 + L1M4 LINE L1 4885 5148 -998 1 1412 1230 48 0 0 chr4 108465525 108465672 -47164448 + B1_Mus2 SINE Alu 1 147 0 1 1412 189 0 0 0 chr4 108465672 108465693 -47164427 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1412 225 149 103 149 chr4 108465717 108465804 -47164316 + MER63C DNA AcHobo 356 438 -492 1 1412 363 306 155 23 chr4 108465848 108466115 -47164005 + B4A SINE B4 11 283 -9 1 1412 419 284 109 6 chr4 108466158 108466314 -47163806 + MER63C DNA AcHobo 505 676 -254 1 1412 271 319 53 0 chr4 108467245 108467339 -47162781 - MIRm SINE MIR -140 136 38 1 1412 588 121 0 0 chr4 108467570 108467661 -47162459 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1412 203 359 0 0 chr4 108467781 108467834 -47162286 - L2c LINE L2 -222 3165 3113 1 1412 383 319 107 45 chr4 108467844 108468133 -47161987 - L2c LINE L2 -429 2990 2684 1 1412 229 271 82 0 chr4 108468228 108468313 -47161807 - MIRb SINE MIR -71 197 106 1 1412 281 135 19 0 chr4 108468566 108468618 -47161502 + GA-rich Low_complexity Low_complexity 3 55 0 1 1412 203 338 38 25 chr4 108468648 108468806 -47161314 - MIR3 SINE MIR -14 194 35 1 1412 1213 111 21 5 chr4 108469939 108470130 -47159990 + B2_Mm2 SINE B2 2 195 0 1 1412 193 326 132 51 chr4 108470510 108470707 -47159413 - MIRb SINE MIR -8 260 48 1 1412 21 0 0 0 chr4 108471115 108471136 -47158984 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 453 116 0 0 chr4 108471332 108471401 -47158719 + (CTTA)n Simple_repeat Simple_repeat 2 70 0 1 1412 1160 57 0 0 chr4 108471403 108471543 -47158577 - B1_Mm SINE Alu -6 141 2 1 1412 259 277 50 60 chr4 108471822 108471922 -47158198 - PB1D10 SINE Alu -9 108 10 1 1412 665 242 15 0 chr4 108471938 108472070 -47158050 - B1_Mur1 SINE Alu -9 140 7 1 1412 840 249 9 23 chr4 108472100 108472318 -47157802 - ID_B1 SINE B4 -8 216 2 1 1412 1320 80 43 5 chr4 108472345 108472533 -47157587 - B2_Mm2 SINE B2 0 195 1 1 1412 599 167 110 8 chr4 108472924 108473051 -47157069 + B1_Mur2 SINE Alu 1 140 -9 1 1412 3327 154 104 21 chr4 108473056 108473726 -47156394 + RMER21B LTR ERV1 1 726 -116 1 1412 496 254 26 9 chr4 108473742 108473857 -47156263 - PB1 SINE Alu -9 118 2 1 1412 195 100 0 0 chr4 108473880 108473910 -47156210 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1412 538 141 5 0 chr4 108473914 108474007 -47156113 - RMER21B LTR ERV1 0 842 682 1 1412 496 338 91 9 chr4 108474079 108474309 -47155811 - MIR SINE MIR -3 259 11 1 1412 324 240 130 15 chr4 108474966 108475097 -47155023 + RSINE1 SINE B4 2 147 -18 1 1412 667 256 167 0 chr4 108475223 108475391 -47154729 + B3 SINE B2 1 196 -20 1 1412 844 109 0 0 chr4 108475652 108475771 -47154349 + B1_Mus1 SINE Alu 1 119 -29 1 1412 201 176 0 0 chr4 108475779 108475813 -47154307 + A-rich Low_complexity Low_complexity 1 34 0 1 1412 900 53 0 0 chr4 108475886 108476000 -47154120 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 1 1412 530 179 50 130 chr4 108476683 108476844 -47153276 - B1_Mur4 SINE Alu 0 150 3 1 1412 266 359 63 7 chr4 108476893 108477036 -47153084 + MIRb SINE MIR 39 189 -79 1 1412 432 0 0 0 chr4 108477041 108477089 -47153031 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1412 821 289 0 62 chr4 108477161 108477371 -47152749 + B3A SINE B2 2 198 0 1 1412 625 245 94 35 chr4 108477383 108477536 -47152584 + B3 SINE B2 1 164 -52 1 1412 495 0 0 0 chr4 108477536 108477591 -47152529 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1412 207 0 0 0 chr4 108477591 108477613 -47152507 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1412 625 245 94 35 chr4 108477613 108477661 -47152459 + B3 SINE B2 165 214 -2 1 1412 627 236 180 0 chr4 108477674 108477852 -47152268 + B3 SINE B2 1 210 -6 1 1412 600 245 71 14 chr4 108477882 108478023 -47152097 + B1_Mur1 SINE Alu 1 149 0 1 1412 187 286 152 67 chr4 108478049 108478154 -47151966 - L2b LINE L2 -237 3138 3025 1 1412 549 222 7 80 chr4 108478390 108478527 -47151593 - RSINE1 SINE B4 -35 130 4 1 1412 793 275 73 91 chr4 108478528 108478912 -47151208 + MTEb LTR MaLR 3 379 0 1 1412 193 310 106 12 chr4 108479134 108479219 -47150901 + MIRc SINE MIR 54 146 -122 1 1412 432 0 0 0 chr4 108479234 108479282 -47150838 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1412 775 73 36 9 chr4 108479283 108479394 -47150726 - PB1D9 SINE Alu -6 114 1 1 1412 747 200 7 7 chr4 108479420 108479556 -47150564 + B1_Mur2 SINE Alu 1 136 -13 1 1412 666 89 27 0 chr4 108479577 108479689 -47150431 + (GA)n Simple_repeat Simple_repeat 1 115 0 1 1412 6370 55 15 4 chr4 108479956 108480755 -47149365 - RLTR13C2 LTR ERVK 0 808 1 1 1412 1494 177 173 6 chr4 108481170 108481500 -47148620 + MTD LTR MaLR 12 396 -23 1 1412 306 0 0 0 chr4 108481522 108481556 -47148564 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1412 1120 36 65 0 chr4 108481556 108481695 -47148425 - B1_Mus1 SINE Alu 0 148 1 1 1412 25 0 0 0 chr4 108481745 108481770 -47148350 + AT_rich Low_complexity Low_complexity 1 25 0 1 1412 1196 98 21 29 chr4 108481779 108481983 -47148137 + B2_Mm2 SINE B2 1 162 -33 1 1412 216 0 0 0 chr4 108481983 108482007 -47148113 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1412 437 240 136 58 chr4 108482014 108482169 -47147951 + B3 SINE B2 27 193 -2 1 1412 509 270 152 22 chr4 108482164 108482342 -47147778 + B4A SINE B4 82 282 -10 1 1412 1275 240 64 22 chr4 108483301 108483352 -47146768 + Lx6 LINE L1 7088 7140 -320 1 1412 492 18 0 0 chr4 108483352 108483409 -47146711 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1412 1275 240 64 22 chr4 108483409 108483715 -47146405 + Lx6 LINE L1 7141 7460 0 1 1412 808 249 10 57 chr4 108484093 108484302 -47145818 - RLTR26 LTR ERVK -225 417 219 1 1412 311 225 56 0 chr4 108484385 108484456 -47145664 - U6 snRNA snRNA -28 79 5 1 1412 798 233 111 0 chr4 108484737 108484926 -47145194 + B3 SINE B2 5 214 -2 1 1412 377 224 26 0 chr4 108485060 108485136 -47144984 + ID4 SINE ID 1 78 -5 1 1412 1159 61 0 7 chr4 108486122 108486270 -47143850 + B1_Mus1 SINE Alu 2 148 0 1 1412 526 236 147 16 chr4 108486283 108486412 -47143708 + B1_Mus2 SINE Alu 1 146 -1 1 1412 560 61 0 58 chr4 108486460 108486547 -47143573 - B1_Mur4 SINE Alu -1 149 68 1 1412 362 187 51 71 chr4 108486547 108486558 -47143562 - ID_B1 SINE B4 -1 223 128 1 1412 242 227 12 96 chr4 108486598 108486681 -47143439 + RLTR25B LTR ERVK 410 485 -543 1 1412 389 125 84 19 chr4 108486628 108486708 -47143412 + B1_Mur4 SINE Alu 35 117 -33 1 1412 1095 59 0 0 chr4 108486709 108486844 -47143276 + B1_Mm SINE Alu 3 137 -10 1 1412 659 260 33 0 chr4 108487100 108487250 -47142870 - B3A SINE B2 -37 161 7 1 1412 186 167 0 0 chr4 108489128 108489164 -47140956 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1412 1074 209 24 9 chr4 108489705 108489917 -47140203 - B3 SINE B2 -1 215 1 1 1412 325 272 65 0 chr4 108490680 108490772 -47139348 - RSINE1 SINE B4 0 165 68 1 1412 185 107 0 0 chr4 108491045 108491073 -47139047 + MER5B DNA MER1_type 142 169 -9 1 1412 418 268 235 0 chr4 108491483 108491662 -47138458 - ID_B1 SINE B4 -3 221 1 1 1412 281 193 212 24 chr4 108492406 108492491 -47137629 - PB1D9 SINE Alu -1 119 19 1 1412 252 309 128 0 chr4 108492606 108492618 -47137502 - PB1 SINE Alu -20 107 95 1 1412 1119 82 14 0 chr4 108492618 108492765 -47137355 - B1_Mur4 SINE Alu -1 149 1 1 1412 281 308 26 25 chr4 108492765 108492846 -47137274 - PB1D10 SINE Alu -33 94 2 1 1412 212 352 11 42 chr4 108492767 108492862 -47137258 - ID_B1 SINE B4 -63 161 70 1 1412 518 191 17 18 chr4 108493513 108493633 -47136487 - PB1D9 SINE Alu -17 132 19 1 1412 1176 68 0 0 chr4 108494010 108494157 -47135963 - B1_Mus1 SINE Alu -1 147 1 1 1412 270 0 0 0 chr4 108494383 108494413 -47135707 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1412 717 273 74 46 chr4 108495243 108495527 -47134593 + B4A SINE B4 1 292 0 1 1412 370 276 34 8 chr4 108495653 108495770 -47134350 + PB1D7 SINE Alu 1 120 0 1 1412 1171 195 5 9 chr4 108495773 108495985 -47134135 + B3 SINE B2 2 212 -4 1 1412 872 146 274 0 chr4 108496009 108496173 -47133947 + B3 SINE B2 1 209 -7 1 1412 277 305 48 0 chr4 108496331 108496436 -47133684 - PB1D10 SINE Alu -7 110 1 1 1412 422 289 92 20 chr4 108496436 108496581 -47133539 + MER20 DNA MER1_type 54 209 -10 1 1412 201 182 0 43 chr4 108496597 108496617 -47133503 + polypurine Low_complexity Low_complexity 1 19 0 1 1412 1206 41 0 7 chr4 108496617 108496765 -47133355 + B1_Mus2 SINE Alu 1 147 0 1 1412 201 182 0 43 chr4 108496765 108496790 -47133330 + polypurine Low_complexity Low_complexity 20 44 0 1 1412 245 262 143 32 chr4 108496892 108496955 -47133165 - ID4_ SINE ID -4 79 10 1 1412 723 218 0 70 chr4 108497031 108497189 -47132931 - B1_Mus2 SINE Alu 0 147 1 1 1412 438 336 32 0 chr4 108497228 108497353 -47132767 + RSINE1 SINE B4 2 130 -35 1 1412 690 200 39 0 chr4 108497662 108497792 -47132328 + B1F2 SINE Alu 1 135 -14 1 1412 655 168 61 0 chr4 108497792 108497923 -47132197 + MTEa LTR MaLR 229 367 -12 1 1412 692 97 115 0 chr4 108498035 108498148 -47131972 + B1_Mus2 SINE Alu 18 143 -4 1 1412 24 0 0 0 chr4 108498149 108498173 -47131947 + AT_rich Low_complexity Low_complexity 1 24 0 1 1412 308 323 82 15 chr4 108499476 108499611 -47130509 - L2 LINE L2 -426 2993 2850 1 1412 187 262 143 0 chr4 108499666 108499750 -47130370 - L2 LINE L2 -665 2754 2659 1 1412 532 209 146 0 chr4 108499890 108500000 -47130120 + B3A SINE B2 6 131 -67 1 1412 29 60 0 0 chr4 108500044 108500094 -47130026 + AT_rich Low_complexity Low_complexity 1 50 0 1 1412 237 181 313 0 chr4 108500404 108500487 -47129633 - PB1D10 SINE Alu -2 115 7 2 1412 1037 94 7 20 chr4 108500584 108500736 -47129384 + B1_Mur4 SINE Alu 1 150 0 3 1412 860 40 0 0 chr4 108501154 108501255 -47128865 + B2_Mm2 SINE B2 1 101 -94 4 1412 186 135 0 0 chr4 108501263 108501281 -47128839 + (A)n Simple_repeat Simple_repeat 1 18 0 5 1412 1156 75 7 0 chr4 108501281 108501427 -47128693 + B1_Mus2 SINE Alu 1 147 0 6 1412 186 135 0 0 chr4 108501427 108501445 -47128675 + (A)n Simple_repeat Simple_repeat 1 18 0 7 1412 677 262 97 0 chr4 108501541 108501747 -47128373 + B4A SINE B4 1 226 -66 8 1412 568 225 154 7 chr4 108501754 108501897 -47128223 + RSINE1 SINE B4 2 165 0 9 1412 264 200 0 0 chr4 108501907 108501962 -47128158 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1412 189 0 0 0 chr4 108502031 108502052 -47128068 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1412 444 171 0 0 chr4 108502052 108502134 -47127986 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1412 1464 44 22 11 chr4 108502327 108502511 -47127609 + B2_Mm2 SINE B2 2 187 -8 1 1412 301 322 0 33 chr4 108502780 108502870 -47127250 + B4A SINE B4 199 285 -7 8 1412 23 0 0 0 chr4 108503360 108503383 -47126737 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 204 40 0 0 chr4 108506189 108506214 -47123906 + (CGG)n Simple_repeat Simple_repeat 3 27 0 1 1412 189 0 0 0 chr4 108507239 108507260 -47122860 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1412 328 236 108 43 chr4 108508305 108508398 -47121722 - B4A SINE B4 -23 269 171 1 1412 617 183 52 84 chr4 108508406 108508561 -47121559 - B3A SINE B2 -22 176 27 1 1412 1152 56 14 0 chr4 108508594 108508738 -47121382 - B1_Mus1 SINE Alu -2 146 1 1 1412 219 379 60 55 chr4 108508819 108509037 -47121083 - L2a LINE L2 -16 3410 3192 2 1412 1026 83 15 0 chr4 108509113 108509245 -47120875 - B1_Mus2 SINE Alu -12 135 2 2 1412 336 277 28 14 chr4 108509432 108509566 -47120554 + MIRb SINE MIR 21 157 -111 2 1412 295 182 37 49 chr4 108509729 108509810 -47120310 + B1_Mur3 SINE Alu 21 100 -49 2 1412 229 294 56 56 chr4 108510246 108510354 -47119766 + MIR3 SINE MIR 87 194 -14 2 1412 272 268 242 47 chr4 108510426 108510641 -47119479 - MIRb SINE MIR -9 259 3 2 1412 440 273 98 20 chr4 108511401 108511554 -47118566 + MIR SINE MIR 58 222 -40 2 1412 749 159 80 0 chr4 108511574 108511712 -47118408 + B1_Mur4 SINE Alu 1 149 -1 2 1412 292 0 45 23 chr4 108511750 108511794 -47118326 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1412 1177 50 0 21 chr4 108511794 108511929 -47118191 - B1_Mus1 SINE Alu -12 136 2 2 1412 247 161 16 16 chr4 108512051 108512114 -47118006 - L1MC2 LINE L1 -2 6342 6280 3 1412 511 297 32 6 chr4 108512121 108512277 -47117843 + RSINE1 SINE B4 2 161 -4 3 1412 189 0 0 0 chr4 108512371 108512392 -47117728 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 1412 967 79 0 0 chr4 108512398 108512524 -47117596 - B2_Mm2 SINE B2 -69 126 1 3 1412 356 262 49 80 chr4 108512525 108512634 -47117486 - L1MC2 LINE L1 -111 6233 6121 3 1412 1424 68 26 26 chr4 108512634 108512829 -47117291 - B2_Mm2 SINE B2 0 195 1 3 1412 356 262 49 80 chr4 108512829 108512881 -47117239 - L1MC2 LINE L1 -224 6120 6077 3 1412 288 0 0 0 chr4 108512952 108512984 -47117136 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1412 613 293 69 58 chr4 108512984 108513245 -47116875 - B4 SINE B4 -25 267 4 3 1412 521 239 179 6 chr4 108513248 108513404 -47116716 - MLT1B LTR MaLR -38 352 170 3 1412 883 114 46 0 chr4 108513432 108513563 -47116557 + B1_Mus1 SINE Alu 12 148 0 3 1412 785 209 0 0 chr4 108513575 108513704 -47116416 + B3 SINE B2 2 130 -86 3 1412 180 0 0 0 chr4 108513724 108513744 -47116376 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1412 318 26 0 0 chr4 108514086 108514125 -47115995 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1412 970 73 13 87 chr4 108514125 108514275 -47115845 - B1_Mus1 SINE Alu -8 140 2 4 1412 751 122 120 15 chr4 108515220 108515353 -47114767 + B1_Mur3 SINE Alu 2 148 -1 4 1412 474 226 194 0 chr4 108515675 108515799 -47114321 + Lx8 LINE L1 6976 7123 -350 4 1412 1741 218 98 9 chr4 108515827 108516285 -47113835 - RLTR28 LTR ERVL 0 524 26 4 1412 308 234 47 0 chr4 108516290 108516354 -47113766 + Lx8 LINE L1 7212 7278 -195 4 1412 693 103 0 0 chr4 108516499 108516616 -47113504 + (TC)n Simple_repeat Simple_repeat 1 117 0 4 1412 649 263 30 5 chr4 108516617 108516816 -47113304 + RMER10B LTR ERVL 195 398 0 4 1412 373 214 48 3 chr4 108517412 108517524 -47112596 - B1_Mur2 SINE Alu -1 148 2 4 1412 1007 90 20 14 chr4 108517745 108517891 -47112229 - B1_Mur3 SINE Alu 0 149 3 4 1412 307 347 0 0 chr4 108517893 108517965 -47112155 + RSINE1 SINE B4 90 161 -4 5 1412 356 289 192 0 chr4 108518743 108518899 -47111221 - MIR SINE MIR -21 241 56 5 1412 259 321 42 84 chr4 108519042 108519161 -47110959 - MIR SINE MIR -57 205 92 5 1412 1720 0 21 0 chr4 108519164 108519352 -47110768 - B2_Mm1a SINE B2 -1 192 1 5 1412 1425 74 26 0 chr4 108522520 108522709 -47107411 - B2_Mm2 SINE B2 0 195 2 5 1412 524 281 34 26 chr4 108522741 108522858 -47107262 + PB1D7 SINE Alu 3 120 0 5 1412 191 418 38 0 chr4 108523070 108523149 -47106971 + L3 LINE CR1 4405 4486 -3 5 1412 914 88 138 6 chr4 108523195 108523355 -47106765 + B2_Mm2 SINE B2 14 194 -1 5 1412 1484 59 0 0 chr4 108523355 108523542 -47106578 + L1Md_T LINE L1 6396 6582 0 5 1412 823 152 37 118 chr4 108523590 108523777 -47106343 + B2_Mm2 SINE B2 15 186 -9 5 1412 26 30 0 0 chr4 108523861 108523894 -47106226 + AT_rich Low_complexity Low_complexity 1 33 0 6 1412 335 222 27 40 chr4 108523978 108524053 -47106067 - ID4 SINE ID 0 83 10 6 1412 403 279 17 35 chr4 108524105 108524220 -47105900 + PB1D10 SINE Alu 5 117 0 6 1412 360 366 0 47 chr4 108524223 108524392 -47105728 + RSINE1 SINE B4 3 163 -2 6 1412 343 287 21 0 chr4 108524447 108524541 -47105579 - B1_Mur1 SINE Alu -16 133 38 6 1412 210 292 0 0 chr4 108524744 108524792 -47105328 - B1F1 SINE Alu -100 49 2 6 1412 364 273 0 0 chr4 108525146 108525223 -47104897 - B4A SINE B4 -213 79 3 6 1412 22 35 0 0 chr4 108525228 108525257 -47104863 + AT_rich Low_complexity Low_complexity 1 29 0 6 1412 1386 82 11 0 chr4 108525453 108525636 -47104484 + B2_Mm1t SINE B2 2 186 -7 6 1412 443 270 0 0 chr4 108526107 108526218 -47103902 + PB1D7 SINE Alu 1 111 -9 6 1412 302 213 63 51 chr4 108526227 108526306 -47103814 + B3A SINE B2 1 80 -118 7 1412 417 260 52 0 chr4 108526376 108526472 -47103648 + PB1D10 SINE Alu 2 102 -15 7 1412 1284 139 158 181 chr4 108526472 108526876 -47103244 - RMER4A LTR ERVK -3 463 69 7 1412 180 0 0 0 chr4 108526888 108526908 -47103212 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1412 1084 67 0 0 chr4 108526908 108527043 -47103077 - B1_Mus2 SINE Alu -11 136 2 7 1412 468 298 52 13 chr4 108527098 108527251 -47102869 + RSINE1 SINE B4 2 160 -5 7 1412 352 290 45 45 chr4 108527275 108527387 -47102733 - RSINE1 SINE B4 -33 132 21 7 1412 524 183 150 0 chr4 108527417 108527537 -47102583 - B1_Mm SINE Alu -5 142 5 7 176 237 256 134 24 chr4 108527578 108527654 -47102466 - MIRm SINE MIR -172 96 25 7 1413 729 68 256 0 chr4 108527678 108527795 -47102325 + B1_Mus1 SINE Alu 2 148 0 7 1413 205 167 0 40 chr4 108527823 108527838 -47102282 + T-rich Low_complexity Low_complexity 35 48 0 8 1413 504 211 54 27 chr4 108527838 108527950 -47102170 - PB1D9 SINE Alu -1 119 5 8 1413 205 167 0 40 chr4 108527950 108527984 -47102136 + T-rich Low_complexity Low_complexity 1 34 0 8 1413 287 306 11 23 chr4 108527999 108528086 -47102034 - PB1 SINE Alu -35 92 7 8 1413 730 260 61 77 chr4 108528127 108528222 -47101898 - B4A SINE B4 -2 290 205 8 1413 321 302 58 32 chr4 108528222 108528376 -47101744 - RSINE1 SINE B4 -6 159 2 8 1413 730 260 61 77 chr4 108528376 108528526 -47101594 - B4A SINE B4 -88 204 49 8 1413 369 0 0 0 chr4 108528586 108528627 -47101493 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1413 213 295 126 55 chr4 108529259 108529442 -47100678 - MIR3 SINE MIR 0 208 13 8 1413 871 235 0 51 chr4 108529804 108530019 -47100101 + B3 SINE B2 2 205 -11 8 1413 365 287 279 4 chr4 108530088 108530350 -47099770 - L2a LINE L2 -56 3370 3037 8 1413 234 213 210 112 chr4 108530389 108530532 -47099588 - L2a LINE L2 -464 2955 2799 8 1413 207 0 0 0 chr4 108530784 108530807 -47099313 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 9 1413 705 157 58 103 chr4 108531038 108531194 -47098926 - B1_Mur3 SINE Alu 0 149 1 9 1413 876 165 14 14 chr4 108531224 108531365 -47098755 - B1_Mur4 SINE Alu -8 142 2 9 1413 527 275 36 7 chr4 108531424 108531563 -47098557 + B1F1 SINE Alu 1 143 -6 9 1413 213 316 67 67 chr4 108531658 108531807 -47098313 - L2c LINE L2 -307 3080 2932 9 1413 648 250 51 32 chr4 108532409 108532566 -47097554 + RSINE1 SINE B4 6 165 0 9 1413 334 276 76 0 chr4 108534882 108534987 -47095133 - PB1 SINE Alu -4 123 11 9 1413 208 275 39 108 chr4 108535260 108535362 -47094758 - MIR SINE MIR -35 227 133 9 1413 858 211 32 8 chr4 108535364 108535570 -47094550 - B3A SINE B2 -2 214 2 9 1413 518 198 97 18 chr4 108535600 108535713 -47094407 - B1_Mur1 SINE Alu -9 140 19 9 1413 456 280 64 18 chr4 108535925 108536096 -47094024 + L1M3 LINE L1 5593 5771 -412 1 1413 354 225 24 48 chr4 108537525 108537609 -47092511 - PB1D7 SINE Alu -8 112 31 1 1413 1217 35 0 0 chr4 108537968 108538109 -47092011 - B1_Mus2 SINE Alu -5 142 2 1 1413 1255 107 0 22 chr4 108538157 108538339 -47091781 + B2_Mm2 SINE B2 3 180 -15 1 1413 218 233 0 0 chr4 108538391 108538434 -47091686 + A-rich Low_complexity Low_complexity 1 43 0 1 1413 547 156 0 103 chr4 108538591 108538698 -47091422 + B1_Mus1 SINE Alu 40 135 -13 1 1413 305 28 0 0 chr4 108538696 108538732 -47091388 - U2 snRNA snRNA -152 36 1 1 1413 761 256 61 5 chr4 108538786 108538979 -47091141 - RMER5 LTR ERV1 0 534 331 1 1413 357 271 114 19 chr4 108538979 108539025 -47091095 + ID SINE ID 1 57 -167 1 1413 1140 37 0 0 chr4 108539025 108539159 -47090961 + B1_Mus1 SINE Alu 2 135 -13 1 1413 219 36 0 0 chr4 108539159 108539187 -47090933 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1413 357 271 114 19 chr4 108539187 108539297 -47090823 + ID_B1 SINE B4 58 172 -52 1 1413 764 241 93 54 chr4 108539379 108539638 -47090482 - RMER5 LTR ERV1 -251 283 15 1 1413 254 200 60 0 chr4 108539644 108539707 -47090413 + L1ME1 LINE L1 6066 6129 -35 1 1413 225 218 151 65 chr4 108539738 108539831 -47090289 + Charlie2a DNA MER1_type 1473 1573 -1288 1 1413 914 131 34 20 chr4 108540024 108540172 -47089948 - B1_Mur4 SINE Alu 0 150 1 1 1413 942 96 129 37 chr4 108540221 108540384 -47089736 - B2_Mm1t SINE B2 -14 179 2 1 1413 411 151 0 0 chr4 108540444 108540537 -47089583 + CT-rich Low_complexity Low_complexity 2 94 0 1 1413 542 178 75 116 chr4 108540539 108540685 -47089435 - B1F1 SINE Alu -1 148 9 1 1413 826 247 41 21 chr4 108540710 108540904 -47089216 - B3 SINE B2 0 216 19 1 1413 466 259 33 33 chr4 108540914 108541034 -47089086 - PB1D7 SINE Alu 0 120 1 1 1413 860 209 42 21 chr4 108541850 108542041 -47088079 - ID_B1 SINE B4 -28 196 2 1 1413 244 250 0 67 chr4 108542097 108542157 -47087963 + L2a LINE L2 3286 3341 -85 1 1413 180 77 0 0 chr4 108542543 108542569 -47087551 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 1 1413 654 148 18 9 chr4 108543006 108543115 -47087005 - B1_Mur1 SINE Alu -20 129 20 1 1413 201 74 0 0 chr4 108543419 108543446 -47086674 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1413 957 234 4 43 chr4 108543693 108543925 -47086195 - ID_B1 SINE B4 0 224 2 1 1413 231 256 97 28 chr4 108543995 108544123 -47085997 + L2b LINE L2 3253 3387 0 1 1413 631 228 193 0 chr4 108544590 108544735 -47085385 + ID_B1 SINE B4 52 224 0 1 1413 1571 237 48 11 chr4 108545407 108545765 -47084355 - MTE2a LTR MaLR -6 373 3 1 1413 189 256 0 0 chr4 108546070 108546113 -47084007 + L2c LINE L2 3283 3325 -62 1 1413 276 339 86 59 chr4 108546176 108546409 -47083711 - MTE2a LTR MaLR -20 359 99 1 1413 1722 188 109 18 chr4 108546409 108546621 -47083499 + MTD LTR MaLR 1 219 -200 1 1413 1258 48 0 0 chr4 108546621 108546768 -47083352 + B1_Mus1 SINE Alu 2 148 0 1 1413 1722 188 109 18 chr4 108546768 108546939 -47083181 + MTD LTR MaLR 220 419 0 1 1413 232 393 94 47 chr4 108546939 108547027 -47083093 - MTE2a LTR MaLR -261 98 3 1 1413 300 265 123 57 chr4 108547670 108547882 -47082238 + MLT1H2 LTR MaLR 29 265 -314 1 1413 310 286 13 13 chr4 108547951 108548029 -47082091 + MLT1H2 LTR MaLR 391 468 -21 1 1413 285 286 70 103 chr4 108548611 108548767 -47081353 - LTR85a LTR Gypsy? -3 699 549 1 1413 342 0 0 0 chr4 108549017 108549055 -47081065 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1413 567 217 150 56 chr4 108549059 108549318 -47080802 - B4A SINE B4 -20 272 2 1 1413 426 20 0 0 chr4 108549395 108549446 -47080674 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1413 23 0 0 0 chr4 108549500 108549523 -47080597 + AT_rich Low_complexity Low_complexity 1 23 0 1 1413 613 299 38 87 chr4 108549618 108549882 -47080238 - MIRb SINE MIR -15 253 3 1 1413 315 350 140 11 chr4 108550374 108550553 -47079567 - L2 LINE L2 -2856 563 362 1 1413 976 148 204 0 chr4 108550765 108550941 -47079179 + B3 SINE B2 1 212 -4 1 1413 531 118 0 0 chr4 108552849 108552934 -47077186 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1413 367 365 83 26 chr4 108552995 108553130 -47076990 + B4A SINE B4 30 172 -120 1 1413 195 42 0 0 chr4 108553130 108553154 -47076966 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1413 367 365 83 26 chr4 108553154 108553173 -47076947 + B4A SINE B4 173 189 -103 1 1413 815 235 43 29 chr4 108553173 108553383 -47076737 + B3 SINE B2 3 215 -1 1 1413 367 365 83 26 chr4 108553383 108553455 -47076665 + B4A SINE B4 190 270 -22 1 1413 743 151 25 19 chr4 108553789 108554157 -47075963 + (CA)n Simple_repeat Simple_repeat 1 370 0 1 1413 770 121 36 6 chr4 108554196 108554363 -47075757 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1413 224 327 19 0 chr4 108554849 108554927 -47075193 + MIRb SINE MIR 185 260 -8 1 1413 339 25 0 0 chr4 108555116 108555156 -47074964 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1413 327 241 12 25 chr4 108555166 108555247 -47074873 - RSINE1 SINE B4 -3 162 83 1 1413 638 200 0 46 chr4 108555636 108555767 -47074353 + RSINE1 SINE B4 41 165 0 1 1413 538 255 127 0 chr4 108555800 108555957 -47074163 - B4 SINE B4 -115 177 1 1 1413 383 279 77 26 chr4 108555983 108556155 -47073965 - MIRc SINE MIR -76 192 11 1 1413 272 269 26 71 chr4 108556854 108556990 -47073130 + MIR3 SINE MIR 40 168 -40 1 1413 978 180 24 63 chr4 108557020 108557227 -47072893 + B3 SINE B2 18 216 0 1 1413 192 40 0 0 chr4 108557330 108557355 -47072765 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1413 216 158 0 0 chr4 108557433 108557471 -47072649 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1 1413 472 284 12 166 chr4 108557471 108557583 -47072537 - ID_B1 SINE B4 -3 221 126 1 1413 1129 88 0 0 chr4 108557583 108557731 -47072389 - B1_Mus1 SINE Alu 0 148 1 1 1413 472 284 12 166 chr4 108557731 108557787 -47072333 - ID_B1 SINE B4 -99 125 79 1 1413 325 331 71 40 chr4 108557788 108557824 -47072296 + ID SINE ID 50 89 -135 1 1413 412 256 101 7 chr4 108557824 108557928 -47072192 + B1F1 SINE Alu 2 103 -17 1 1413 796 280 14 36 chr4 108557954 108558173 -47071947 + B3 SINE B2 1 214 -2 1 1413 881 175 0 7 chr4 108558421 108558565 -47071555 + B1_Mur3 SINE Alu 1 143 -6 1 1413 636 50 0 0 chr4 108558578 108558658 -47071462 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 1 1413 204 343 110 41 chr4 108558735 108558881 -47071239 - MIR SINE MIR -56 206 51 1 1413 333 235 216 15 chr4 108559189 108559323 -47070797 + RSINE1 SINE B4 3 163 -2 1 1413 239 204 0 75 chr4 108559377 108559430 -47070690 + ID_B1 SINE B4 78 126 -98 1 1413 440 164 33 141 chr4 108559392 108559513 -47070607 + PB1D9 SINE Alu 9 116 -4 1 1413 235 123 17 34 chr4 108559515 108559574 -47070546 + (CAA)n Simple_repeat Simple_repeat 3 60 0 1 1413 467 70 0 14 chr4 108559772 108559845 -47070275 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1413 357 337 0 10 chr4 108559855 108559954 -47070166 - B4A SINE B4 -9 283 186 1 1413 753 150 0 0 chr4 108559972 108560119 -47070001 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 1 1413 649 272 35 17 chr4 108560119 108560291 -47069829 - B4A SINE B4 -113 179 5 1 1413 535 215 33 59 chr4 108560719 108560872 -47069248 - RSINE1 SINE B4 -2 163 15 1 1413 351 0 0 0 chr4 108560882 108560921 -47069199 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1413 301 244 163 0 chr4 108561140 108561226 -47068894 + PB1D10 SINE Alu 18 117 0 1 1413 1185 133 0 48 chr4 108561296 108561485 -47068635 + ORR1C2 LTR MaLR 1 180 -204 1 1413 2805 141 190 17 chr4 108561491 108562229 -47067891 - Lx2B LINE L1 -991 6009 5119 1 1413 501 239 14 34 chr4 108562233 108562380 -47067740 + Lx2B LINE L1 6855 6998 -2 1 1413 202 290 29 95 chr4 108562535 108562672 -47067448 - L3 LINE CR1 -514 3975 3848 1 1413 345 209 0 15 chr4 108562690 108562758 -47067362 + L2b LINE L2 3309 3375 0 1 1413 954 271 174 40 chr4 108563448 108563821 -47066299 - MLT1F1 LTR MaLR 0 569 147 1 1413 536 181 0 31 chr4 108564180 108564277 -47065843 - PB1D9 SINE Alu -5 115 22 1 1413 1105 222 42 22 chr4 108564460 108564747 -47065373 + ORR1D1 LTR MaLR 41 355 -4 1 1413 475 156 67 0 chr4 108564753 108564843 -47065277 - MLT1B LTR MaLR -24 366 271 1 1413 301 291 116 4 chr4 108564930 108565022 -47065098 - MLT1B LTR MaLR -255 110 14 1 1413 311 300 66 86 chr4 108565882 108566079 -47064041 + MIRc SINE MIR 8 206 -62 1 1413 440 176 250 40 chr4 108566231 108566355 -47063765 - RSINE1 SINE B4 -5 160 11 1 1413 433 263 131 29 chr4 108566444 108566581 -47063539 + RSINE1 SINE B4 2 152 -13 1 1413 33 0 0 0 chr4 108566609 108566642 -47063478 + AT_rich Low_complexity Low_complexity 1 33 0 1 1413 916 124 29 0 chr4 108566646 108566783 -47063337 + B1_Mur3 SINE Alu 2 142 -7 1 1413 303 93 0 0 chr4 108566788 108566831 -47063289 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1413 372 59 0 0 chr4 108567783 108567834 -47062286 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1413 182 229 20 40 chr4 108568368 108568418 -47061702 - L2a LINE L2 0 3426 3378 1 1413 690 268 96 4 chr4 108568517 108568768 -47061352 + B4A SINE B4 5 278 -14 1 1413 23 0 0 0 chr4 108568953 108568976 -47061144 + AT_rich Low_complexity Low_complexity 1 23 0 1 1413 1189 172 29 5 chr4 108568982 108569192 -47060928 - B3 SINE B2 0 216 2 1 1413 251 296 58 78 chr4 108569279 108569433 -47060687 - L2a LINE L2 -588 2831 2681 1 1413 321 308 20 158 chr4 108569446 108569525 -47060595 - L2a LINE L2 -902 2517 2438 1 1413 895 168 0 0 chr4 108569525 108569668 -47060452 + B1_Mus1 SINE Alu 5 147 -1 1 1413 321 308 20 158 chr4 108569668 108569842 -47060278 - L2a LINE L2 -982 2437 2299 1 1413 226 143 53 18 chr4 108569910 108569967 -47060153 - L2a LINE L2 -1092 2327 2269 1 1413 710 236 50 14 chr4 108569972 108570137 -47059983 + ID_B1 SINE B4 81 246 -46 1 1413 535 335 73 0 chr4 108570142 108570360 -47059760 - L2 LINE L2 -1229 2190 1957 1 1413 1167 302 163 37 chr4 108570360 108571244 -47058876 - L2 LINE L2 -1649 1770 776 1 1413 1886 111 43 61 chr4 108571320 108571647 -47058473 - ORR1A3 LTR MaLR 0 326 6 1 1413 484 314 201 31 chr4 108571657 108572071 -47058049 - L2 LINE L2 -2784 635 152 1 1413 816 108 46 80 chr4 108572455 108572606 -47057514 + B1_Mus1 SINE Alu 1 146 -2 1 1413 258 267 30 131 chr4 108572699 108572798 -47057322 + B4A SINE B4 82 170 -122 1 1413 1225 160 112 178 chr4 108572846 108573257 -47056863 - ORR1C2 LTR MaLR 0 384 1 2 1413 240 376 0 0 chr4 108573309 108573394 -47056726 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1413 793 215 87 6 chr4 108573470 108573643 -47056477 + B3A SINE B2 6 192 -6 2 1413 515 99 0 0 chr4 108573657 108573738 -47056382 + L1Md_F2 LINE L1 6499 6579 -3 2 1413 450 254 82 67 chr4 108574224 108574258 -47055862 + MT2B LTR ERVL 121 156 -445 2 1413 777 94 0 0 chr4 108574258 108574364 -47055756 + B1_Mus2 SINE Alu 2 107 -40 2 1413 1515 107 0 35 chr4 108574364 108574596 -47055524 - URR1A DNA MER1_type -1 225 2 2 1413 1196 62 7 0 chr4 108575430 108575576 -47054544 - B1_Mus1 SINE Alu 0 148 2 2 1413 515 250 60 8 chr4 108575644 108575761 -47054359 - ID_B1 SINE B4 -9 215 93 2 1413 290 252 170 10 chr4 108576073 108576173 -47053947 + ID_B1 SINE B4 81 196 -28 2 1413 1341 86 27 5 chr4 108576216 108576403 -47053717 + B2_Mm1t SINE B2 2 192 -1 2 1413 1176 51 0 0 chr4 108576414 108576551 -47053569 + B1_Mus2 SINE Alu 1 137 -10 2 1413 351 0 0 0 chr4 108576551 108576590 -47053530 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1413 263 161 18 0 chr4 108576706 108576762 -47053358 + CT-rich Low_complexity Low_complexity 2 58 0 2 1413 227 269 58 0 chr4 108576782 108576834 -47053286 - RSINE1 SINE B4 -28 137 83 2 1413 361 228 101 85 chr4 108576893 108577034 -47053086 - RSINE1 SINE B4 -150 142 1 2 1413 299 260 0 55 chr4 108577040 108577150 -47052970 - L1MC3 LINE L1 -197 7588 7485 2 1413 301 317 47 19 chr4 108577449 108577555 -47052565 + B4 SINE B4 1 109 -183 2 1413 2059 137 188 72 chr4 108577555 108577997 -47052123 + RMER19C LTR ERVK 3 495 -116 2 1413 334 183 151 22 chr4 108578021 108578139 -47051981 - RLTR41 LTR ERV1 -276 170 1 2 1413 498 118 346 15 chr4 108578139 108578245 -47051875 - B3 SINE B2 -67 128 1 2 1413 243 273 25 38 chr4 108578193 108578273 -47051847 - ZP3AR Satellite Satellite -120 92 14 2 1413 369 252 57 40 chr4 108578768 108578892 -47051228 - MIRb SINE MIR -76 192 67 2 1413 358 260 213 0 chr4 108579090 108579240 -47050880 + MIR SINE MIR 5 186 -76 2 1413 243 317 34 28 chr4 108579303 108579415 -47050705 - L2b LINE L2 -220 3167 3049 2 1413 620 164 19 91 chr4 108579440 108579594 -47050526 + B1_Mur3 SINE Alu 2 144 -5 2 1413 361 253 11 0 chr4 108580958 108581049 -47049071 - Kanga1c DNA Tc2 -633 96 5 2 1413 251 250 44 22 chr4 108581151 108581241 -47048879 - L1MC5 LINE L1 -46 7915 7824 2 1413 385 315 76 53 chr4 108581446 108581701 -47048419 + B4 SINE B4 48 281 -11 2 1413 270 0 0 0 chr4 108581799 108581829 -47048291 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1413 717 245 7 0 chr4 108581841 108581988 -47048132 - RSINE1 SINE B4 -14 151 4 2 1413 189 219 49 0 chr4 108583491 108583532 -47046588 + MIRc SINE MIR 1 43 -225 2 1413 2223 173 28 12 chr4 108583535 108583934 -47046186 - MTD LTR MaLR -14 405 1 2 1413 848 210 53 10 chr4 108583985 108584192 -47045928 + B3 SINE B2 1 216 0 2 1413 208 284 119 0 chr4 108584205 108584272 -47045848 + MIR SINE MIR 72 146 -116 2 1413 892 154 203 0 chr4 108584275 108584457 -47045663 + ORR1B1 LTR MaLR 3 221 -173 2 1413 203 152 22 0 chr4 108584462 108584508 -47045612 + GA-rich Low_complexity Low_complexity 2 48 0 2 1413 296 357 25 49 chr4 108584760 108584922 -47045198 - L2c LINE L2 -6 3381 3224 2 1413 476 135 9 0 chr4 108584966 108585077 -47045043 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 1413 306 0 0 0 chr4 108585077 108585111 -47045009 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1413 807 210 0 7 chr4 108585141 108585285 -47044835 - B1_Mur3 SINE Alu -5 144 2 2 1413 357 253 0 57 chr4 108585329 108585417 -47044703 + ID4 SINE ID 1 83 0 2 1413 464 300 60 40 chr4 108585727 108586017 -47044103 - L2a LINE L2 -35 3391 3105 2 1413 1087 235 121 18 chr4 108586410 108586683 -47043437 + MTE2b LTR MaLR 10 310 -69 2 1413 901 168 58 63 chr4 108586887 108587078 -47043042 + URR1B DNA MER1_type 35 224 -1 2 1413 245 349 183 28 chr4 108587180 108587360 -47042760 + L3 LINE CR1 4163 4370 -119 2 1413 186 293 144 16 chr4 108587722 108587847 -47042273 + L2b LINE L2 3224 3364 -11 2 1413 279 287 94 17 chr4 108588160 108588277 -47041843 - MIRb SINE MIR -16 252 127 2 1413 999 228 24 24 chr4 108588303 108588510 -47041610 - B3 SINE B2 -2 214 8 2 1413 285 354 16 49 chr4 108588626 108588748 -47041372 - MIR3 SINE MIR -46 162 45 2 1413 324 0 0 0 chr4 108588876 108588912 -47041208 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1413 441 258 7 95 chr4 108588913 108588950 -47041170 - MIR SINE MIR -21 241 206 2 1413 915 242 56 9 chr4 108588950 108589077 -47041043 - ID_B1 SINE B4 0 224 90 2 1413 315 0 0 0 chr4 108589077 108589112 -47041008 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1413 915 242 56 9 chr4 108589112 108589197 -47040923 - ID SINE ID -135 89 2 2 1413 441 258 7 95 chr4 108589197 108589296 -47040824 - MIR SINE MIR -57 205 117 2 1413 932 246 23 19 chr4 108589433 108589648 -47040472 + ID_B1 SINE B4 8 223 -1 2 1413 1146 45 0 0 chr4 108589667 108589801 -47040319 + B1_Mus1 SINE Alu 2 135 -13 2 1413 180 0 0 0 chr4 108589801 108589821 -47040299 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1413 745 201 136 11 chr4 108589857 108590048 -47040072 - B3 SINE B2 0 216 2 2 1413 273 235 0 42 chr4 108590473 108590586 -47039534 + G-rich Low_complexity Low_complexity 1 108 0 2 1413 216 158 0 0 chr4 108590890 108590928 -47039192 + CT-rich Low_complexity Low_complexity 2 39 0 2 1413 595 230 31 31 chr4 108590941 108591071 -47039049 - B1F SINE Alu -2 147 18 2 1413 1009 186 53 14 chr4 108591156 108591363 -47038757 - B3 SINE B2 0 216 2 2 1413 228 67 0 0 chr4 108591369 108591399 -47038721 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1413 483 282 15 15 chr4 108591683 108591816 -47038304 + RSINE1 SINE B4 5 137 -28 2 1413 186 43 0 0 chr4 108591854 108591877 -47038243 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1413 450 340 154 44 chr4 108592017 108592380 -47037740 + MLT1I LTR MaLR 1 403 -8 2 1413 240 292 124 10 chr4 108592891 108592988 -47037132 + MIRc SINE MIR 12 119 -149 2 1413 240 200 0 0 chr4 108593052 108593102 -47037018 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1413 708 121 0 239 chr4 108593114 108593298 -47036822 - B2_Mm2 SINE B2 -55 140 1 2 1413 813 269 73 25 chr4 108593302 108593588 -47036532 - RLTR15 LTR ERVK -56 303 4 2 1413 203 183 32 48 chr4 108593588 108593651 -47036469 + (TTATA)n Simple_repeat Simple_repeat 4 65 0 2 1413 525 255 66 46 chr4 108593661 108593813 -47036307 - RSINE1 SINE B4 -10 155 1 2 1413 1631 306 92 95 chr4 108593858 108594255 -47035865 + Lx8 LINE L1 5780 6165 -1308 2 1413 1083 174 18 99 chr4 108594255 108594478 -47035642 + B3 SINE B2 1 205 -11 2 1413 1631 306 92 95 chr4 108594478 108594670 -47035450 + Lx8 LINE L1 6166 6320 -1153 2 1413 1232 47 0 0 chr4 108594670 108594818 -47035302 + B1_Mus1 SINE Alu 1 148 0 2 1413 1631 306 92 95 chr4 108594818 108595374 -47034746 + Lx8 LINE L1 6321 6922 -551 2 1413 535 308 30 0 chr4 108595523 108595656 -47034464 - RSINE1 SINE B4 -28 137 1 2 1413 477 0 0 0 chr4 108595791 108595844 -47034276 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1413 255 61 0 0 chr4 108595844 108595876 -47034244 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1413 405 348 29 51 chr4 108595879 108596191 -47033929 + Lx8 LINE L1 7153 7457 -16 2 1413 251 246 58 0 chr4 108596284 108596353 -47033767 - L1M LINE L1 -837 5357 5285 2 1413 1172 81 0 0 chr4 108596755 108596903 -47033217 + B1_Mus1 SINE Alu 1 148 0 2 1413 1838 221 16 26 chr4 108597008 108597389 -47032731 - MTD LTR MaLR -40 379 3 2 1413 1242 100 0 0 chr4 108597561 108597741 -47032379 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1413 289 193 179 73 chr4 108598288 108598411 -47031709 - MLT1A0 LTR MaLR -4 361 226 2 1413 217 299 17 93 chr4 108599374 108599492 -47030628 - L2c LINE L2 -9 3378 3270 2 1413 392 262 28 9 chr4 108599714 108599822 -47030298 + PB1D7 SINE Alu 1 110 -10 2 1413 529 194 43 79 chr4 108599851 108599991 -47030129 + B1F SINE Alu 15 149 0 2 1413 243 0 0 0 chr4 108600024 108600051 -47030069 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1413 562 317 153 5 chr4 108600123 108600332 -47029788 + RCHARR1 DNA MER1_type 1 240 -734 2 1413 227 260 86 49 chr4 108600335 108600416 -47029704 + MT2B LTR ERVL 174 257 -344 2 1413 528 240 0 0 chr4 108600348 108600444 -47029676 + B1F2 SINE Alu 37 132 -17 2 1413 1169 63 0 0 chr4 108600517 108600660 -47029460 - B1_Mus2 SINE Alu 0 147 5 2 1413 845 207 80 6 chr4 108600668 108600843 -47029277 - B3 SINE B2 -2 214 27 2 1413 8379 42 1 1 chr4 108600843 108601867 -47028253 - L1_Mm LINE L1 -1281 4602 3579 2 1413 191 262 0 23 chr4 108602147 108602233 -47027887 + (TATG)n Simple_repeat Simple_repeat 1 84 0 2 1413 304 21 20 40 chr4 108602263 108602313 -47027807 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 2 1413 1168 81 0 0 chr4 108602313 108602461 -47027659 - B1_Mus1 SINE Alu 0 148 1 2 1413 22 0 0 0 chr4 108602621 108602643 -47027477 + AT_rich Low_complexity Low_complexity 1 22 0 2 1413 470 320 63 63 chr4 108602672 108602975 -47027145 - L4 LINE RTE -25 2004 1702 2 1413 189 0 0 0 chr4 108603340 108603361 -47026759 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1413 279 0 0 0 chr4 108603364 108603395 -47026725 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1413 311 268 23 11 chr4 108603618 108603705 -47026415 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1413 233 356 138 0 chr4 108604065 108604152 -47025968 + L2c LINE L2 3264 3362 -25 3 1413 272 324 0 0 chr4 108604187 108604255 -47025865 + RSINE1 SINE B4 3 70 -95 3 1413 246 322 61 34 chr4 108604289 108604437 -47025683 - L2a LINE L2 -16 3410 3259 3 1413 243 239 0 0 chr4 108604439 108604485 -47025635 + L1MB8 LINE L1 6128 6173 -5 3 1413 1053 188 219 0 chr4 108604567 108604854 -47025266 - Lx9 LINE L1 -6 7638 7289 3 1413 379 259 34 48 chr4 108605793 108605969 -47024151 - ID_B1 SINE B4 -2 222 7 3 1413 242 326 65 39 chr4 108606738 108606891 -47023229 - MLT1H LTR MaLR -338 211 55 3 1413 239 204 0 0 chr4 108607841 108607885 -47022235 - PB1D10 SINE Alu -23 94 51 3 1413 401 230 54 0 chr4 108608197 108608271 -47021849 + ID4_ SINE ID 3 80 -3 3 1413 365 260 110 31 chr4 108608312 108608439 -47021681 + B1F SINE Alu 10 146 -3 3 1413 273 311 129 55 chr4 108609192 108609331 -47020789 + L2c LINE L2 3126 3285 -102 3 1413 921 194 92 136 chr4 108609331 108609742 -47020378 - RLTR9C LTR ERVK 0 393 1 3 1413 273 286 149 18 chr4 108609742 108609835 -47020285 + L2c LINE L2 3258 3365 -10 3 1413 1283 14 0 7 chr4 108610323 108610470 -47019650 - B1_Mm SINE Alu 0 147 2 3 1413 231 325 75 0 chr4 108610570 108610650 -47019470 + L2b LINE L2 3279 3364 -11 3 1413 189 147 0 0 chr4 108611400 108611434 -47018686 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1413 638 174 33 0 chr4 108611744 108611865 -47018255 + B1F SINE Alu 7 131 -18 3 1413 305 164 0 0 chr4 108611859 108611914 -47018206 + ID_B1 SINE B4 146 200 -24 3 1413 445 117 0 0 chr4 108611885 108611973 -47018147 + B1F SINE Alu 64 131 -18 3 1413 568 82 0 34 chr4 108611972 108612060 -47018060 + B1F SINE Alu 65 149 0 3 1413 307 417 32 16 chr4 108612116 108612362 -47017758 + MIRb SINE MIR 3 252 -16 3 1413 199 302 0 0 chr4 108613009 108613052 -47017068 - MIRb SINE MIR -196 72 30 3 1413 492 276 48 8 chr4 108614104 108614228 -47015892 - B1F1 SINE Alu -20 129 1 3 1413 265 311 14 0 chr4 108614169 108614243 -47015877 - B4A SINE B4 -147 145 71 3 1413 345 250 0 0 chr4 108614834 108614922 -47015198 + PB1D10 SINE Alu 1 88 -29 3 1413 207 0 0 0 chr4 108614933 108614956 -47015164 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1413 354 271 180 15 chr4 108615486 108615692 -47014428 - MIR SINE MIR -14 248 9 3 1413 188 67 33 0 chr4 108616071 108616101 -47014019 + (CAA)n Simple_repeat Simple_repeat 2 32 0 3 1413 241 329 12 0 chr4 108616801 108616886 -47013234 - MIR3 SINE MIR -7 201 116 3 1413 640 273 36 50 chr4 108617551 108617771 -47012349 + ID_B1 SINE B4 6 222 -2 3 1413 789 99 0 0 chr4 108617773 108617894 -47012226 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1413 216 191 0 0 chr4 108618145 108618192 -47011928 + T-rich Low_complexity Low_complexity 1 47 0 3 1413 530 215 114 15 chr4 108618226 108618358 -47011762 + B1F SINE Alu 3 147 -2 3 1413 537 174 0 0 chr4 108618450 108618611 -47011509 + (CA)n Simple_repeat Simple_repeat 1 161 0 3 1413 423 200 0 0 chr4 108618653 108618930 -47011190 + (CA)n Simple_repeat Simple_repeat 1 277 0 3 1413 324 228 0 0 chr4 108618943 108619114 -47011006 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 1413 387 218 0 0 chr4 108619159 108619472 -47010648 + (CA)n Simple_repeat Simple_repeat 1 313 0 3 1413 267 230 0 0 chr4 108619535 108619700 -47010420 + (CA)n Simple_repeat Simple_repeat 1 165 0 3 1413 214 239 0 0 chr4 108619700 108619767 -47010353 + CT-rich Low_complexity Low_complexity 2 68 0 3 1413 423 206 0 0 chr4 108619767 108619947 -47010173 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1413 189 0 0 0 chr4 108619970 108619991 -47010129 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1413 261 189 0 0 chr4 108620035 108620130 -47009990 + T-rich Low_complexity Low_complexity 1 95 0 3 1413 854 244 139 16 chr4 108620825 108621083 -47009037 - B4A SINE B4 -1 291 2 3 1413 627 271 76 19 chr4 108621240 108621451 -47008669 + ID_B1 SINE B4 2 224 0 3 1413 336 273 93 60 chr4 108622486 108622615 -47007505 + MIRb SINE MIR 49 184 -84 3 1413 1739 134 64 196 chr4 108622615 108623069 -47007051 - ORR1B1 LTR MaLR 0 394 1 3 1413 336 273 93 60 chr4 108623069 108623122 -47006998 + MIRb SINE MIR 185 237 -31 3 1413 441 0 0 0 chr4 108623538 108623587 -47006533 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1413 543 31 0 0 chr4 108623843 108623908 -47006212 + (GGA)n Simple_repeat Simple_repeat 2 66 0 3 1413 414 0 0 0 chr4 108624023 108624069 -47006051 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1413 348 24 0 0 chr4 108624069 108624109 -47006011 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1413 2019 211 131 49 chr4 108624779 108625499 -47004621 + RMER1B Other Other 91 1064 -2 3 1413 33985 65 3 1 chr4 108625718 108630934 -46999186 + L1Md_F2 LINE L1 362 5586 -297 3 1413 7938 54 6 10 chr4 108630934 108631924 -46998196 + L1Md_F2 LINE L1 5587 6572 -10 3 1413 266 24 73 0 chr4 108631952 108631993 -46998127 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1413 582 268 0 0 chr4 108632018 108632141 -46997979 + B3A SINE B2 58 180 -18 3 1413 459 0 0 0 chr4 108632148 108632199 -46997921 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1413 695 272 13 0 chr4 108632808 108632966 -46997154 + RSINE1 SINE B4 2 161 -4 3 1413 25 0 0 0 chr4 108632986 108633011 -46997109 + AT_rich Low_complexity Low_complexity 1 25 0 3 1413 865 141 0 22 chr4 108633026 108633164 -46996956 + B1_Mur3 SINE Alu 5 139 -10 3 1413 450 0 0 0 chr4 108633164 108633214 -46996906 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 3 1413 431 328 209 33 chr4 108633220 108633704 -46996416 - MLT1K LTR MaLR -17 578 10 3 1413 217 398 78 0 chr4 108633862 108634028 -46996092 + MER91A DNA Tip100 2 180 -16 3 1413 436 289 181 48 chr4 108634158 108634467 -46995653 + MLT1C LTR MaLR 42 391 -76 3 1413 527 254 41 109 chr4 108634502 108634723 -46995397 + ID_B1 SINE B4 2 207 -17 3 1413 650 91 75 9 chr4 108634734 108634951 -46995169 + (CAGAGA)n Simple_repeat Simple_repeat 1 231 0 3 1413 269 232 143 78 chr4 108635483 108635637 -46994483 + MIR SINE MIR 67 230 -32 3 1413 644 261 6 18 chr4 108635797 108635961 -46994159 - ID_B1 SINE B4 -62 162 1 3 1413 1211 54 0 0 chr4 108636535 108636683 -46993437 + B1_Mus1 SINE Alu 1 148 0 3 1413 372 152 0 0 chr4 108636683 108636749 -46993371 + A-rich Low_complexity Low_complexity 4 69 0 3 1413 1110 232 99 15 chr4 108636758 108637090 -46993030 + ORR1D2 LTR MaLR 1 360 -10 3 1413 700 171 20 112 chr4 108637303 108637500 -46992620 - RLTR40 LTR ERVK -235 582 404 3 1413 711 77 0 9 chr4 108637500 108637605 -46992515 + B1_Mm SINE Alu 44 147 0 3 1413 758 183 129 0 chr4 108637601 108637787 -46992333 - RLTR40 LTR ERVK -401 416 207 3 1413 366 123 0 0 chr4 108637787 108637844 -46992276 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1413 549 229 9 0 chr4 108637852 108637957 -46992163 - B1_Mus1 SINE Alu -23 125 20 3 1413 787 141 81 0 chr4 108637958 108638107 -46992013 - RLTR40 LTR ERVK -653 164 4 3 1413 489 224 30 10 chr4 108638126 108638225 -46991895 + PB1D10 SINE Alu 1 101 -16 3 1413 826 184 6 6 chr4 108638387 108638567 -46991553 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1413 603 248 20 7 chr4 108638686 108638832 -46991288 + B3 SINE B2 69 216 0 3 1413 182 468 0 0 chr4 108639060 108639139 -46990981 - L2b LINE L2 0 3375 3297 3 1413 1405 100 16 0 chr4 108639152 108639342 -46990778 + B2_Mm2 SINE B2 2 194 -1 3 1413 2046 85 3 7 chr4 108639430 108639727 -46990393 - ORR1A2 LTR MaLR 0 327 32 3 1413 654 162 0 0 chr4 108639730 108639847 -46990273 + CT-rich Low_complexity Low_complexity 4 120 0 3 1413 1161 118 0 0 chr4 108639854 108640032 -46990088 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 3 1413 553 119 221 101 chr4 108640032 108640140 -46989980 - B2_Mm2 SINE B2 -27 168 42 3 1413 817 98 117 36 chr4 108640140 108640277 -46989843 - B1_Mus1 SINE Alu 0 148 1 3 1413 553 119 221 101 chr4 108640277 108640317 -46989803 - B2_Mm2 SINE B2 -154 41 2 3 1413 349 145 26 13 chr4 108640317 108640372 -46989748 - ORR1A2 LTR MaLR -271 56 1 3 1413 1180 75 0 0 chr4 108640420 108640567 -46989553 - B1_Mm SINE Alu 0 147 1 3 1413 771 191 42 21 chr4 108640596 108640740 -46989380 + B1_Mur3 SINE Alu 1 147 -2 3 1413 275 297 0 0 chr4 108640947 108641021 -46989099 + ID4_ SINE ID 1 74 -9 3 1413 39 38 0 0 chr4 108641112 108641165 -46988955 + AT_rich Low_complexity Low_complexity 1 53 0 3 1413 1236 41 0 0 chr4 108641415 108641561 -46988559 + B1_Mm SINE Alu 2 147 0 3 1413 271 98 33 0 chr4 108641561 108641622 -46988498 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 1413 318 282 113 30 chr4 108641800 108641968 -46988152 + L1M5 LINE L1 5658 5839 -401 3 1413 600 317 106 86 chr4 108642035 108642536 -46987584 + LTR33 LTR ERVL 5 515 0 3 1413 581 234 8 0 chr4 108642727 108642855 -46987265 - ID_B1 SINE B4 0 224 96 3 1413 21 57 0 0 chr4 108642895 108642930 -46987190 + AT_rich Low_complexity Low_complexity 1 35 0 3 1413 338 259 0 69 chr4 108642930 108642971 -46987149 + ID SINE ID 1 41 -183 3 1413 2066 112 15 164 chr4 108642971 108643439 -46986681 - RMER10B LTR ERVL 0 398 1 3 1413 363 227 554 27 chr4 108643439 108643560 -46986560 + ID_B1 SINE B4 42 224 0 3 1413 453 259 88 12 chr4 108643657 108643817 -46986303 - MLT1B LTR MaLR -218 172 1 3 1413 1085 228 44 61 chr4 108644125 108644419 -46985701 + MTD LTR MaLR 15 303 -116 3 1413 1115 38 0 8 chr4 108645410 108645544 -46984576 + B1_Mm SINE Alu 2 134 -13 3 1413 181 0 33 33 chr4 108645544 108645574 -46984546 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1413 249 293 235 24 chr4 108646384 108646597 -46983523 - MIRb SINE MIR -4 264 7 3 1413 900 155 14 7 chr4 108646714 108646857 -46983263 - B1_Mur3 SINE Alu -1 148 5 3 1413 431 48 16 0 chr4 108646933 108646995 -46983125 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 1413 347 330 31 0 chr4 108646995 108647092 -46983028 - PB1D10 SINE Alu -12 105 6 3 1413 401 292 0 0 chr4 108647009 108647098 -46983022 - ID_B1 SINE B4 -55 169 81 3 1413 467 300 80 0 chr4 108647487 108647637 -46982483 - MIRb SINE MIR -15 253 92 3 1413 704 80 0 0 chr4 108648218 108648318 -46981802 + B1_Mus2 SINE Alu 48 147 0 4 1413 207 0 0 0 chr4 108649356 108649379 -46980741 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 1413 3000 97 54 2 chr4 108649379 108649823 -46980297 - Lx3A LINE L1 -15 6966 6500 4 1413 619 190 16 0 chr4 108649972 108650093 -46980027 + B1_Mur4 SINE Alu 22 144 -6 4 1413 1942 147 65 96 chr4 108650519 108650934 -46979186 + RLTR9D LTR ERVK 1 402 -1 4 1413 523 97 0 0 chr4 108650973 108651045 -46979075 + B2_Mm2 SINE B2 2 73 -122 4 1413 229 312 0 128 chr4 108651045 108651098 -46979022 + RSINE1 SINE B4 3 111 -54 4 1413 10103 66 25 6 chr4 108651099 108652860 -46977260 + L1VL4 LINE L1 493 2290 -1269 4 1413 3897 131 10 10 chr4 108652868 108653493 -46976627 + Lx2 LINE L1 6373 6997 0 4 1413 1306 89 25 50 chr4 108653535 108653735 -46976385 + B2_Mm2 SINE B2 1 195 0 4 1413 271 261 131 33 chr4 108653790 108654004 -46976116 + Lx7 LINE L1 7444 7678 -18 4 1413 1612 21 11 0 chr4 108654011 108654199 -46975921 + B2_Mm1a SINE B2 2 191 -2 4 1413 29 28 0 0 chr4 108654228 108654264 -46975856 + AT_rich Low_complexity Low_complexity 1 36 0 4 1413 777 22 0 0 chr4 108654735 108654826 -46975294 + (TTC)n Simple_repeat Simple_repeat 3 93 0 4 1413 306 0 0 0 chr4 108654826 108654860 -46975260 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1413 384 307 155 59 chr4 108655104 108655343 -46974777 + MLT1D LTR MaLR 6 267 -238 4 1413 233 163 0 23 chr4 108655410 108655454 -46974666 + ID4 SINE ID 2 44 -39 4 1413 573 278 0 2 chr4 108655527 108655678 -46974442 - B1F SINE Alu -2 148 1 4 1413 389 302 8 0 chr4 108655684 108655810 -46974310 + MLT1D LTR MaLR 379 505 0 4 1413 302 332 156 18 chr4 108655859 108656083 -46974037 + MIRc SINE MIR 11 265 -3 4 1413 423 234 92 0 chr4 108656922 108657063 -46973057 - RMER15 LTR ERVL 0 575 422 4 1413 1097 304 38 31 chr4 108657251 108657702 -46972418 - L1MA4A LINE L1 -374 6631 6178 4 1413 661 242 60 25 chr4 108657703 108657902 -46972218 - ID_B1 SINE B4 -15 209 4 4 1413 873 296 116 11 chr4 108657985 108658460 -46971660 - L1MA4A LINE L1 -1306 5539 5015 4 1413 775 110 63 0 chr4 108658476 108658603 -46971517 - B1_Mur4 SINE Alu 0 150 16 4 1413 371 167 0 0 chr4 108658604 108658664 -46971456 - L1_Mur3 LINE L1 -1944 3936 3877 4 176 342 270 128 20 chr4 108658668 108658770 -46971350 + RSINE1 SINE B4 8 120 -45 4 1414 375 23 0 0 chr4 108658781 108658825 -46971295 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1414 22 0 0 0 chr4 108658912 108658934 -46971186 + AT_rich Low_complexity Low_complexity 1 22 0 4 1414 351 0 0 0 chr4 108658937 108658976 -46971144 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1414 765 264 108 47 chr4 108658997 108659255 -46970865 - B4A SINE B4 -16 276 3 4 1414 302 260 0 0 chr4 108659281 108659354 -46970766 - L1_Mur3 LINE L1 -2068 3812 3740 4 1414 833 226 10 49 chr4 108659381 108659586 -46970534 - B3 SINE B2 0 216 20 4 1414 1065 71 26 0 chr4 108659577 108659732 -46970388 + B2_Mm2 SINE B2 34 192 -3 4 1414 559 236 106 0 chr4 108659970 108660093 -46970027 - ID_B1 SINE B4 -8 216 81 4 1414 997 208 190 3 chr4 108660275 108660559 -46969561 - MTD LTR MaLR -40 379 43 4 1414 637 282 84 24 chr4 108660593 108660808 -46969312 - L1MA4A LINE L1 -4244 2605 2379 4 1414 192 40 0 0 chr4 108660808 108660833 -46969287 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1414 637 314 113 33 chr4 108660833 108661284 -46968836 - L1MA4A LINE L1 -4136 2446 1988 4 1414 668 325 0 0 chr4 108661320 108661480 -46968640 - RSINE1 SINE B4 0 165 6 4 1414 766 240 87 6 chr4 108661556 108661728 -46968392 + B4 SINE B4 95 280 -12 4 1414 261 0 0 0 chr4 108661897 108661926 -46968194 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1414 672 54 0 0 chr4 108661926 108662018 -46968102 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 1414 1090 192 14 9 chr4 108662455 108662665 -46967455 - B3 SINE B2 -5 211 1 4 1414 727 268 69 16 chr4 108663569 108663872 -46966248 - L1MC4 LINE L1 -464 7578 7260 4 1414 717 171 7 44 chr4 108664138 108664273 -46965847 - B3 SINE B2 -86 130 1 4 1414 266 221 0 56 chr4 108664822 108664894 -46965226 + B4 SINE B4 1 68 -224 4 1414 1063 223 62 98 chr4 108665331 108665719 -46964401 - MTE2a LTR MaLR -5 374 1 4 1414 942 136 0 22 chr4 108666072 108666253 -46963867 + GA-rich Low_complexity Low_complexity 4 180 0 4 1414 1203 48 0 7 chr4 108666682 108666828 -46963292 + B1_Mus2 SINE Alu 1 145 -2 4 1414 1023 259 45 11 chr4 108667396 108667661 -46962459 + B4 SINE B4 1 274 -18 4 1414 21 0 0 0 chr4 108667847 108667868 -46962252 + AT_rich Low_complexity Low_complexity 1 21 0 4 1414 312 222 0 0 chr4 108667871 108667943 -46962177 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1414 747 136 42 0 chr4 108667943 108668061 -46962059 - B1_Mur3 SINE Alu -8 141 19 4 1414 714 273 0 12 chr4 108668258 108668421 -46961699 - RSINE1 SINE B4 -2 163 3 4 1414 754 233 58 11 chr4 108668705 108668896 -46961224 - B3 SINE B2 -15 201 2 4 1414 768 237 0 0 chr4 108668901 108669040 -46961080 - B1F1 SINE Alu -1 148 10 4 1414 426 309 80 7 chr4 108669642 108669779 -46960341 + B3A SINE B2 48 194 -4 4 1414 951 250 15 30 chr4 108669807 108670009 -46960111 + B3 SINE B2 1 199 -17 4 1414 307 200 5 35 chr4 108670221 108670299 -46959821 - PB1 SINE Alu -39 88 17 4 1414 309 281 85 43 chr4 108670483 108670624 -46959496 - B4 SINE B4 -105 187 41 4 1414 453 219 20 30 chr4 108671215 108671314 -46958806 - U6 snRNA snRNA -9 98 1 4 1414 250 274 91 36 chr4 108671333 108671443 -46958677 + L2c LINE L2 3270 3385 -2 4 1414 315 0 0 0 chr4 108671611 108671646 -46958474 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1414 1113 83 7 0 chr4 108671838 108671983 -46958137 - B1_Mus1 SINE Alu 0 148 3 4 1414 756 153 27 20 chr4 108672146 108672293 -46957827 - B1_Mur1 SINE Alu 0 149 2 4 1414 207 191 0 0 chr4 108673349 108673396 -46956724 + GA-rich Low_complexity Low_complexity 1 47 0 4 1414 599 135 0 0 chr4 108673923 108674012 -46956108 - B1_Mus1 SINE Alu -59 89 1 4 1414 425 283 62 23 chr4 108674012 108674052 -46956068 - B4 SINE B4 -112 179 46 4 1414 369 0 0 0 chr4 108674145 108674186 -46955934 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1414 224 247 35 105 chr4 108674762 108674848 -46955272 - MIR3 SINE MIR -29 179 100 4 1414 371 248 146 19 chr4 108675332 108675435 -46954685 + ID_B1 SINE B4 106 221 -3 4 1414 308 326 41 112 chr4 108675666 108675720 -46954400 + B4 SINE B4 37 76 -216 4 1414 662 214 20 52 chr4 108675720 108675873 -46954247 + B1_Mur3 SINE Alu 1 148 -1 4 1414 300 27 0 0 chr4 108676015 108676052 -46954068 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 1414 281 216 0 19 chr4 108676109 108676161 -46953959 - B1_Mur1 SINE Alu -31 118 68 4 1414 1318 29 129 0 chr4 108676164 108676334 -46953786 - B2_Mm2 SINE B2 -3 192 1 4 1414 530 275 20 7 chr4 108676716 108676866 -46953254 - RSINE1 SINE B4 -11 154 3 4 1414 412 274 31 104 chr4 108677292 108677328 -46952792 - RSINE1 SINE B4 -6 159 127 4 1414 414 0 0 0 chr4 108677328 108677374 -46952746 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1414 412 274 31 104 chr4 108677374 108677500 -46952620 - RSINE1 SINE B4 -39 126 9 4 1414 741 188 0 0 chr4 108677773 108677922 -46952198 + (TA)n Simple_repeat Simple_repeat 1 149 0 4 1414 413 210 49 0 chr4 108678156 108678237 -46951883 - B3 SINE B2 -9 207 123 4 1414 261 300 44 111 chr4 108678242 108678377 -46951743 + MIRb SINE MIR 5 130 -138 4 1414 207 150 0 0 chr4 108678693 108678705 -46951415 + (CAGT)n Simple_repeat Simple_repeat 2 13 0 4 1414 1424 65 22 0 chr4 108678705 108678889 -46951231 + B2_Mm2 SINE B2 2 189 -6 4 1414 207 150 0 0 chr4 108678889 108678916 -46951204 + (CAGT)n Simple_repeat Simple_repeat 2 28 0 4 1414 814 268 55 10 chr4 108678933 108679133 -46950987 - ID_B1 SINE B4 -15 209 1 4 1414 814 205 44 93 chr4 108679156 108679382 -46950738 - B3 SINE B2 0 216 2 4 1414 192 152 0 0 chr4 108679623 108679656 -46950464 + CT-rich Low_complexity Low_complexity 1 33 0 4 1414 247 220 0 20 chr4 108679657 108679708 -46950412 + T-rich Low_complexity Low_complexity 4 53 0 4 1414 889 172 14 0 chr4 108679715 108679860 -46950260 - B1_Mur3 SINE Alu 0 149 3 4 1414 26 30 0 0 chr4 108679864 108679897 -46950223 + AT_rich Low_complexity Low_complexity 1 33 0 4 1414 999 191 40 0 chr4 108679898 108680097 -46950023 - B3 SINE B2 -8 208 2 4 1414 184 274 118 0 chr4 108680155 108680206 -46949914 + L2a LINE L2 3312 3368 -58 4 1414 321 298 78 9 chr4 108680520 108680635 -46949485 - B1F1 SINE Alu -19 130 8 4 1414 192 77 0 0 chr4 108680751 108680777 -46949343 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 4 1414 298 244 109 73 chr4 108680777 108680892 -46949228 - PB1D10 SINE Alu -21 129 5 4 1414 5371 32 0 2 chr4 108681030 108681661 -46948459 - L1Md_T LINE L1 0 6582 5953 4 1414 710 311 10 20 chr4 108681942 108682139 -46947981 - B4A SINE B4 -79 213 19 4 1414 332 342 91 11 chr4 108682206 108682392 -46947728 + MER44B DNA MER2_type 1 201 -349 4 1414 378 257 46 85 chr4 108682495 108682648 -46947472 - RSINE1 SINE B4 -17 148 2 4 1414 28 29 0 0 chr4 108682923 108682958 -46947162 + AT_rich Low_complexity Low_complexity 1 35 0 4 1414 864 36 0 0 chr4 108683072 108683182 -46946938 - B1_Mus1 SINE Alu 0 148 39 4 1414 1940 151 18 24 chr4 108683178 108683517 -46946603 - ORR1C1 LTR MaLR -41 337 1 4 1414 384 295 108 77 chr4 108683802 108684075 -46946045 - B4 SINE B4 -2 290 5 4 1414 213 291 18 0 chr4 108684250 108684305 -46945815 + L2b LINE L2 3320 3375 0 5 1414 329 290 8 86 chr4 108684690 108684807 -46945313 - PB1D7 SINE Alu -10 110 3 5 1414 1062 65 13 25 chr4 108685011 108685169 -46944951 - B2_Mm1t SINE B2 0 193 38 5 1414 367 291 224 19 chr4 108685246 108685407 -46944713 - Tigger7 DNA MER2_type -3 2488 2401 5 1414 617 223 185 35 chr4 108685406 108685638 -46944482 - MER44C DNA MER2_type -235 498 232 5 1414 784 182 0 14 chr4 108685625 108685770 -46944350 + B1_Mur4 SINE Alu 7 149 -1 5 1414 183 42 0 0 chr4 108685830 108685854 -46944266 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1414 219 167 0 0 chr4 108686195 108686237 -46943883 + GA-rich Low_complexity Low_complexity 3 44 0 5 1414 337 288 12 41 chr4 108686237 108686407 -46943713 - HAL1-2a_MD LINE L1 -533 2491 2327 5 1414 514 210 57 25 chr4 108687117 108687129 -46942991 - ID_B1 SINE B4 0 224 215 5 1414 366 23 0 0 chr4 108687129 108687172 -46942948 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 5 1414 421 267 101 29 chr4 108687172 108687238 -46942882 - B1F SINE Alu -10 139 66 5 1414 696 144 253 44 chr4 108687238 108687420 -46942700 - URR1B DNA MER1_type -3 222 3 5 1414 514 210 57 25 chr4 108687420 108687462 -46942658 - ID_B1 SINE B4 -81 143 100 5 1414 421 267 101 29 chr4 108687462 108687478 -46942642 - B1F SINE Alu -84 65 2 5 1414 543 312 63 25 chr4 108687586 108687744 -46942376 + RSINE1 SINE B4 2 165 0 5 1414 314 257 125 27 chr4 108687753 108687865 -46942255 - PB1 SINE Alu -4 123 1 5 1414 228 228 0 0 chr4 108687899 108687956 -46942164 + CT-rich Low_complexity Low_complexity 3 59 0 5 1414 822 168 29 0 chr4 108687960 108688097 -46942023 - B1_Mur1 SINE Alu -6 143 3 5 1414 670 116 14 0 chr4 108688195 108688333 -46941787 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 1414 184 260 20 0 chr4 108688517 108688567 -46941553 + MIR SINE MIR 47 97 -111 5 1414 402 257 193 10 chr4 108690731 108690942 -46939178 - B4A SINE B4 -43 249 1 5 1414 299 346 46 9 chr4 108691007 108691115 -46939005 - MER74B LTR ERVL -454 168 57 5 1414 643 236 14 7 chr4 108691873 108692014 -46938106 - B1_Mur2 SINE Alu -7 142 1 5 1414 675 272 51 5 chr4 108692032 108692228 -46937892 - B4A SINE B4 -87 205 1 5 1414 679 282 134 60 chr4 108692238 108692910 -46937210 + L1M4 LINE L1 4352 5073 -1073 5 1414 226 286 38 9 chr4 108693052 108693158 -46936962 + L1ME3B LINE L1 4910 5018 -1128 5 1414 294 98 0 0 chr4 108693316 108693367 -46936753 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1414 403 322 79 17 chr4 108693543 108693720 -46936400 + L1ME3B LINE L1 5328 5515 -725 5 1414 357 343 96 26 chr4 108693843 108694115 -46936005 + L1ME3B LINE L1 5650 5940 -300 5 1414 259 221 405 4 chr4 108694412 108694639 -46935481 + MER106B DNA MER1_type 324 641 -418 5 1414 480 245 9 54 chr4 108694649 108694761 -46935359 + PB1 SINE Alu 5 111 -16 5 1414 233 202 9 208 chr4 108694690 108694768 -46935352 + MT2B2 LTR ERVL 197 255 -329 5 1414 192 40 0 0 chr4 108694768 108694793 -46935327 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 5 1414 356 303 13 0 chr4 108694796 108694872 -46935248 + PB1D7 SINE Alu 1 77 -43 5 1414 23 33 0 0 chr4 108694981 108695011 -46935109 + AT_rich Low_complexity Low_complexity 1 30 0 5 1414 1171 96 42 0 chr4 108695013 108695180 -46934940 - B2_Mm2 SINE B2 -20 175 2 5 1414 430 278 144 6 chr4 108695213 108695387 -46934733 + B4A SINE B4 2 199 -93 5 1414 186 118 0 0 chr4 108695467 108695501 -46934619 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1414 564 189 9 18 chr4 108695507 108695620 -46934500 + B3 SINE B2 102 213 -3 5 1414 3088 53 0 0 chr4 108695667 108696060 -46934060 - L1_Mm LINE L1 -137 5746 5354 5 1414 1878 48 0 0 chr4 108696060 108696289 -46933831 + L1_Mus1 LINE L1 6338 6566 -1 5 1414 355 267 33 11 chr4 108696382 108696473 -46933647 + PB1D10 SINE Alu 1 93 -24 5 1414 298 236 111 0 chr4 108696492 108696564 -46933556 + ID4 SINE ID 4 83 0 5 1414 396 0 0 0 chr4 108697130 108697174 -46932946 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1414 444 278 0 0 chr4 108697473 108697588 -46932532 + PB1D7 SINE Alu 1 115 -5 5 1414 462 300 246 57 chr4 108697794 108698188 -46931932 - MLT1D LTR MaLR -2 503 35 5 1414 227 268 54 0 chr4 108699155 108699211 -46930909 - MIR SINE MIR -147 115 57 5 1414 608 341 57 95 chr4 108699216 108699605 -46930515 - MLT1A LTR MaLR 0 374 1 5 1414 328 270 95 0 chr4 108700201 108700275 -46929845 + ID2 SINE ID 2 82 -1 5 1414 787 220 91 11 chr4 108700212 108700387 -46929733 + ID_B1 SINE B4 21 209 -15 5 1414 446 327 66 22 chr4 108700574 108700802 -46929318 - MIRb SINE MIR -3 265 28 5 1414 23 33 0 0 chr4 108701324 108701354 -46928766 + AT_rich Low_complexity Low_complexity 1 30 0 5 1414 1061 209 111 14 chr4 108701525 108701885 -46928235 + Tigger2b DNA MER2_type 8 402 -324 5 1414 357 278 58 88 chr4 108701903 108702108 -46928012 + Tigger2b DNA MER2_type 455 653 -73 5 1414 321 250 88 0 chr4 108702108 108702176 -46927944 + B4A SINE B4 217 290 -2 5 1414 1029 133 0 0 chr4 108702228 108702550 -46927570 + (TG)n Simple_repeat Simple_repeat 1 322 0 5 1414 613 286 28 22 chr4 108702670 108702852 -46927268 + B3A SINE B2 1 183 -15 5 1414 229 147 0 0 chr4 108703080 108703114 -46927006 - B1F2 SINE Alu -115 34 1 5 1414 429 206 115 19 chr4 108703734 108703838 -46926282 - B1_Mur3 SINE Alu 0 149 36 5 1414 669 229 142 37 chr4 108703950 108704168 -46925952 + B4A SINE B4 1 241 -51 5 1414 244 304 0 14 chr4 108704326 108704384 -46925736 + B4A SINE B4 223 280 -12 5 1414 183 42 0 0 chr4 108704384 108704408 -46925712 + (CACAT)n Simple_repeat Simple_repeat 1 24 0 5 1414 244 304 0 14 chr4 108704408 108704419 -46925701 + B4A SINE B4 281 290 -2 5 1414 240 214 0 0 chr4 108704507 108704549 -46925571 + RSINE1 SINE B4 100 141 -24 5 1414 573 55 0 0 chr4 108704550 108704623 -46925497 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1414 23 0 0 0 chr4 108704688 108704711 -46925409 + AT_rich Low_complexity Low_complexity 1 23 0 5 1414 186 43 0 0 chr4 108705188 108705211 -46924909 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1414 207 384 0 0 chr4 108705226 108705299 -46924821 - MIRb SINE MIR -137 131 59 5 1414 813 40 0 0 chr4 108706639 108706740 -46923380 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 5 1414 338 291 34 82 chr4 108707506 108707652 -46922468 + MT2B LTR ERVL 126 264 -337 5 1414 902 145 14 0 chr4 108707547 108707685 -46922435 + B1_Mus1 SINE Alu 9 148 0 5 1414 735 154 29 22 chr4 108707758 108707897 -46922223 + BC1_Mm scRNA scRNA 1 140 -12 5 1414 21 36 0 0 chr4 108707930 108707958 -46922162 + AT_rich Low_complexity Low_complexity 1 28 0 5 1414 24 0 0 0 chr4 108708190 108708214 -46921906 + AT_rich Low_complexity Low_complexity 1 24 0 5 1414 458 17 0 17 chr4 108708218 108708278 -46921842 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1414 734 206 14 22 chr4 108708278 108708417 -46921703 - B1_Mur1 SINE Alu -11 138 1 5 1414 484 257 69 94 chr4 108708422 108708624 -46921496 - B3A SINE B2 -1 197 1 5 1414 819 230 35 30 chr4 108708996 108709198 -46920922 + B3 SINE B2 1 203 -13 5 1414 403 335 31 63 chr4 108710070 108710261 -46919859 + B4 SINE B4 106 290 -2 5 1414 252 0 0 0 chr4 108710292 108710320 -46919800 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1414 825 187 22 0 chr4 108710816 108710977 -46919143 - B3 SINE B2 -16 177 2 5 1414 283 286 133 0 chr4 108711852 108711957 -46918163 + PB1D9 SINE Alu 2 120 0 5 1414 1175 42 0 0 chr4 108711997 108712139 -46917981 - B1_Mus1 SINE Alu -2 146 5 5 1414 483 300 0 60 chr4 108713334 108713427 -46916693 + B4A SINE B4 1 84 -208 5 1414 314 194 0 65 chr4 108713427 108713504 -46916616 + B1_Mur3 SINE Alu 1 72 -77 5 1414 315 325 142 12 chr4 108714133 108714295 -46915825 - Charlie4a DNA MER1_type -210 298 116 5 1414 1184 48 7 0 chr4 108714543 108714689 -46915431 + B1_Mus1 SINE Alu 2 148 0 5 1414 628 174 27 34 chr4 108714712 108714861 -46915259 + B1F SINE Alu 1 148 -1 5 1414 770 210 60 42 chr4 108714921 108715138 -46914982 - ORR1D1 LTR MaLR -132 238 1 5 1414 325 177 72 10 chr4 108715286 108715383 -46914737 - L1MA5 LINE L1 0 6300 6198 5 1414 341 75 19 0 chr4 108715786 108715839 -46914281 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1414 897 132 7 0 chr4 108716116 108716252 -46913868 + B1_Mur4 SINE Alu 9 145 -5 5 1414 240 35 0 0 chr4 108716256 108716285 -46913835 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1414 499 298 76 0 chr4 108716473 108716644 -46913476 - ID_B1 SINE B4 0 224 41 5 1414 972 55 0 0 chr4 108716906 108717033 -46913087 + B1_Mus1 SINE Alu 1 127 -21 5 1414 191 114 23 0 chr4 108717042 108717086 -46913034 + (TAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 1414 505 247 209 40 chr4 108717332 108717509 -46912611 - B3 SINE B2 -30 186 1 5 1414 44 20 0 0 chr4 108717583 108717634 -46912486 + AT_rich Low_complexity Low_complexity 1 51 0 5 1414 198 0 0 0 chr4 108717656 108717678 -46912442 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1414 485 179 64 113 chr4 108717681 108717838 -46912282 - B1_Mur4 SINE Alu 0 150 16 5 1414 446 186 259 21 chr4 108717835 108717978 -46912142 - MTD-int LTR MaLR -1076 182 6 5 1414 1565 235 80 18 chr4 108717978 108718368 -46911752 - MTD LTR MaLR -5 414 1 5 1414 543 69 0 0 chr4 108718744 108718816 -46911304 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 5 1414 313 255 45 73 chr4 108718864 108718974 -46911146 + PB1D9 SINE Alu 2 108 -12 5 1414 381 263 0 0 chr4 108719308 108719445 -46910675 + (TG)n Simple_repeat Simple_repeat 2 138 0 5 1414 403 230 129 10 chr4 108719527 108719628 -46910492 + B3 SINE B2 1 113 -103 5 1414 868 117 8 0 chr4 108719735 108719863 -46910257 - B3 SINE B2 -86 130 2 5 1414 497 254 76 0 chr4 108720486 108720604 -46909516 + RSINE1 SINE B4 3 129 -36 6 1414 204 40 0 0 chr4 108720626 108720651 -46909469 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1414 825 52 104 0 chr4 108720764 108720879 -46909241 - B1_Mus1 SINE Alu 0 148 22 6 1414 350 182 47 105 chr4 108720805 108720891 -46909229 - MT2B LTR ERVL -352 249 169 6 1414 257 238 51 61 chr4 108721132 108721228 -46908892 - B1F SINE Alu -45 104 9 6 1414 547 108 45 0 chr4 108721761 108721872 -46908248 + GA-rich Low_complexity Low_complexity 2 117 0 6 1414 1854 157 95 18 chr4 108721885 108722274 -46907846 + MTC LTR MaLR 1 419 -2 6 1414 954 222 68 20 chr4 108722274 108722607 -46907513 + MTC-int LTR MaLR 3 440 -818 6 1414 253 125 0 0 chr4 108723758 108723798 -46906322 + MTD LTR MaLR 292 331 -88 6 1414 397 219 31 20 chr4 108723888 108723986 -46906134 - B4A SINE B4 -189 103 5 6 1414 4041 143 78 11 chr4 108723986 108724783 -46905337 + RMER12 LTR ERVK 39 888 -434 6 1414 399 73 0 0 chr4 108724783 108724838 -46905282 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1414 425 203 219 55 chr4 108724838 108725033 -46905087 + RMER12 LTR ERVK 1004 1370 -202 6 1414 540 0 0 0 chr4 108725166 108725226 -46904894 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1414 621 218 13 90 chr4 108726048 108726204 -46903916 - B1_Mur2 SINE Alu -5 144 1 6 1414 275 291 112 29 chr4 108727993 108728198 -46901922 + L1MB2 LINE L1 5928 6149 -22 6 1414 207 88 0 0 chr4 108729742 108729776 -46900344 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1414 300 281 20 100 chr4 108729886 108729942 -46900178 - MT2B LTR ERVL -309 292 179 6 1414 563 71 24 0 chr4 108729942 108730026 -46900094 - B1_Mus1 SINE Alu -61 87 2 6 1414 255 257 0 18 chr4 108730026 108730072 -46900048 - ORR1B1-int LTR MaLR -862 647 604 6 1414 831 181 13 0 chr4 108730049 108730198 -46899922 - B3 SINE B2 -11 205 55 6 1414 219 235 20 0 chr4 108730226 108730277 -46899843 - B4 SINE B4 -239 53 2 6 1414 368 293 0 0 chr4 108731962 108732044 -46898076 + ID_B1 SINE B4 43 124 -100 6 1414 1096 58 0 0 chr4 108735557 108735694 -46894426 + B1_Mus2 SINE Alu 2 138 -9 6 1414 1955 141 95 18 chr4 108736519 108736910 -46893210 + MTC LTR MaLR 1 421 0 6 1414 813 170 20 20 chr4 108739080 108739230 -46890890 - B1_Mur4 SINE Alu 0 150 1 6 1414 293 264 167 8 chr4 108740782 108740908 -46889212 + RSINE1 SINE B4 12 157 -8 6 1414 294 239 52 60 chr4 108741506 108741622 -46888498 - PB1D10 SINE Alu -2 115 1 6 1414 23 0 0 0 chr4 108741649 108741672 -46888448 + AT_rich Low_complexity Low_complexity 1 23 0 6 1414 814 171 149 0 chr4 108741712 108741893 -46888227 - B3 SINE B2 -7 209 2 6 1414 202 222 0 0 chr4 108742084 108742120 -46888000 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 6 1414 254 179 0 18 chr4 108742150 108742207 -46887913 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1414 243 167 0 0 chr4 108742206 108742246 -46887874 + T-rich Low_complexity Low_complexity 15 54 0 6 1414 1215 54 0 0 chr4 108742246 108742393 -46887727 - B1_Mus2 SINE Alu 0 147 1 6 1414 243 167 0 0 chr4 108742393 108742406 -46887714 + T-rich Low_complexity Low_complexity 2 14 0 6 1414 440 252 25 8 chr4 108742440 108742560 -46887560 - B1F SINE Alu -5 144 23 6 1414 1356 204 130 17 chr4 108742633 108742978 -46887142 + ORR1C2 LTR MaLR 1 384 0 6 1414 428 250 237 14 chr4 108743084 108743303 -46886817 - B4A SINE B4 -23 269 2 6 1414 335 289 41 8 chr4 108743560 108743682 -46886438 - L1MEf LINE L1 -4141 2059 1934 6 1414 216 0 0 0 chr4 108743886 108743910 -46886210 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1414 431 259 34 17 chr4 108746083 108746201 -46883919 + PB1D7 SINE Alu 1 120 0 6 1414 789 212 7 0 chr4 108746483 108746629 -46883491 + B1_Mur1 SINE Alu 1 147 -2 6 1414 22 0 0 0 chr4 108747043 108747065 -46883055 + AT_rich Low_complexity Low_complexity 1 22 0 6 1414 518 274 39 19 chr4 108748554 108748710 -46881410 + RSINE1 SINE B4 3 161 -4 6 1414 931 228 92 11 chr4 108749357 108749874 -46880246 + L1_Rod LINE L1 900 1491 -4356 6 1414 962 255 48 15 chr4 108749890 108750161 -46879959 + Lx9 LINE L1 6751 7030 -614 6 1414 645 265 69 24 chr4 108750263 108750515 -46879605 + Lx9 LINE L1 7309 7574 -70 6 1414 1116 75 0 0 chr4 108750515 108750661 -46879459 + B1_Mus2 SINE Alu 2 147 0 6 1414 645 265 69 24 chr4 108750661 108750698 -46879422 + Lx9 LINE L1 7575 7611 -33 6 1414 967 139 35 0 chr4 108751063 108751207 -46878913 - B1_Mur4 SINE Alu 0 150 2 6 1414 291 180 55 42 chr4 108751488 108751583 -46878537 - MIR SINE MIR -110 158 58 6 1414 1127 95 0 0 chr4 108751909 108752056 -46878064 - B1_Mus2 SINE Alu 0 147 1 6 1414 731 224 14 0 chr4 108753286 108753429 -46876691 - B1_Mur1 SINE Alu -1 148 4 6 1414 364 109 339 18 chr4 108753912 108754024 -46876096 - B2_Mm2 SINE B2 -1 194 47 6 1414 1156 88 6 17 chr4 108754078 108754251 -46875869 - B2_Mm1t SINE B2 -21 172 2 6 1414 754 250 24 14 chr4 108754907 108755104 -46875016 - B3 SINE B2 -6 192 3 6 1414 405 282 161 21 chr4 108755190 108755382 -46874738 + MLT1A0 LTR MaLR 147 365 0 6 1414 231 322 0 36 chr4 108756040 108756136 -46873984 - ID4_ SINE ID -57 95 3 6 1414 416 263 83 0 chr4 108756778 108756911 -46873209 + B1_Mur1 SINE Alu 3 146 -3 6 1414 363 289 26 0 chr4 108757662 108757776 -46872344 - B1F1 SINE Alu -21 128 12 6 1414 26 30 0 0 chr4 108758726 108758759 -46871361 + AT_rich Low_complexity Low_complexity 1 33 0 6 1414 455 266 37 0 chr4 108759418 108759527 -46870593 - PB1D7 SINE Alu -7 113 1 6 1414 426 114 43 0 chr4 108761130 108761200 -46868920 + URR1B DNA MER1_type 151 223 -2 6 1414 269 234 31 0 chr4 108761330 108761394 -46868726 + ID4_ SINE ID 2 67 -16 6 1414 219 270 47 16 chr4 108761655 108761719 -46868401 + B1F2 SINE Alu 13 78 -71 6 1414 279 298 47 19 chr4 108761663 108761769 -46868351 + ID_B1 SINE B4 102 210 -14 6 1414 343 234 26 13 chr4 108761793 108761871 -46868249 + ID4_ SINE ID 3 81 -2 6 1414 376 316 56 72 chr4 108761910 108762159 -46867961 + MER57A-int LTR ERV1 5822 6066 -121 6 1414 1532 62 16 0 chr4 108762315 108762507 -46867613 - B2_Mm2 SINE B2 0 195 1 6 1414 573 270 75 47 chr4 108762943 108763157 -46866963 - ID_B1 SINE B4 -3 221 2 6 1414 245 135 0 19 chr4 108763219 108763272 -46866848 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1414 309 274 29 19 chr4 108763341 108763445 -46866675 - B4A SINE B4 -156 136 32 6 1414 1649 31 0 15 chr4 108763548 108763743 -46866377 + B2_Mm1a SINE B2 2 193 0 6 1414 447 276 186 11 chr4 108764923 108765106 -46865014 - ID_B1 SINE B4 -8 216 2 6 1414 1041 126 68 17 chr4 108765454 108765631 -46864489 - B2_Mm2 SINE B2 -9 186 1 6 1414 189 0 0 0 chr4 108765695 108765716 -46864404 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 6 1414 648 220 26 142 chr4 108765906 108766139 -46863981 + MTD LTR MaLR 26 231 -188 6 1414 422 120 13 39 chr4 108766129 108766207 -46863913 + MTD LTR MaLR 344 419 0 6 1414 3374 69 54 0 chr4 108766558 108767024 -46863096 - L1_Mus4 LINE L1 -5 6631 6141 6 1414 850 264 166 35 chr4 108767032 108767436 -46862684 + MER68 LTR ERVL 1 457 -106 6 1414 557 204 161 0 chr4 108767977 108768114 -46862006 + B3 SINE B2 6 164 -52 6 1414 366 294 216 6 chr4 108768205 108768386 -46861734 + ID_B1 SINE B4 1 219 -5 6 1414 21 36 0 0 chr4 108771039 108771067 -46859053 + AT_rich Low_complexity Low_complexity 1 28 0 6 1414 25 65 0 0 chr4 108771534 108771580 -46858540 + AT_rich Low_complexity Low_complexity 1 46 0 6 1414 207 0 0 0 chr4 108771811 108771834 -46858286 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1414 189 107 0 0 chr4 108772103 108772131 -46857989 + (TTCC)n Simple_repeat Simple_repeat 4 31 0 6 1414 368 252 7 89 chr4 108772136 108772271 -46857849 - ID_B1 SINE B4 -1 223 100 6 1414 671 167 15 0 chr4 108773061 108773193 -46856927 - B1_Mus2 SINE Alu 0 147 14 6 1414 318 240 13 0 chr4 108773516 108773591 -46856529 - PB1D10 SINE Alu -15 102 27 6 1414 701 260 146 4 chr4 108774035 108774282 -46855838 - B4A SINE B4 0 292 11 6 1414 318 300 140 0 chr4 108774363 108774463 -46855657 - B4A SINE B4 -175 117 4 6 1414 1276 34 0 0 chr4 108774482 108774629 -46855491 - B1_Mm SINE Alu 0 147 1 6 1414 235 247 92 69 chr4 108774641 108774728 -46855392 - B1F SINE Alu -7 142 54 6 1414 423 237 76 0 chr4 108775615 108775733 -46854387 - RSINE1 SINE B4 -36 129 3 6 1414 249 83 0 0 chr4 108776569 108776605 -46853515 + (CCA)n Simple_repeat Simple_repeat 2 37 0 6 1414 270 81 0 0 chr4 108776603 108776640 -46853480 + (TCC)n Simple_repeat Simple_repeat 2 38 0 6 1414 758 168 0 26 chr4 108776989 108777142 -46852978 - B1_Mur2 SINE Alu 0 149 1 6 1414 23 0 0 0 chr4 108778066 108778089 -46852031 + AT_rich Low_complexity Low_complexity 1 23 0 6 1414 294 291 87 10 chr4 108778135 108778239 -46851881 + B3 SINE B2 101 212 -4 6 1414 402 350 32 0 chr4 108778356 108778479 -46851641 - RSINE1 SINE B4 -2 163 37 6 1414 775 99 16 0 chr4 108779544 108779665 -46850455 + B1_Mus1 SINE Alu 25 147 -1 6 1414 370 247 34 0 chr4 108779847 108779936 -46850184 + PB1D10 SINE Alu 21 112 -5 6 1414 1441 60 22 0 chr4 108779944 108780128 -46849992 + B2_Mm2 SINE B2 2 189 -6 6 1414 221 318 35 12 chr4 108780486 108780572 -46849548 + L3 LINE CR1 3026 3113 -1376 6 1414 472 245 0 0 chr4 108781385 108781491 -46848629 + PB1D7 SINE Alu 15 120 0 7 1414 339 173 40 0 chr4 108781587 108781662 -46848458 - Lx6 LINE L1 -2 7458 7381 7 1414 627 191 26 84 chr4 108783135 108783289 -46846831 - B1_Mur4 SINE Alu -1 149 5 7 1414 25 65 0 0 chr4 108783488 108783534 -46846586 + AT_rich Low_complexity Low_complexity 1 46 0 7 1414 392 301 7 29 chr4 108784057 108784194 -46845926 - RSINE1 SINE B4 -21 144 11 7 1414 215 290 30 79 chr4 108785207 108785308 -46844812 - L2c LINE L2 -19 3368 3273 7 1414 1148 159 82 0 chr4 108785322 108785529 -46844591 + URR1A DNA MER1_type 3 226 0 7 1414 438 53 0 0 chr4 108786767 108786824 -46843296 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1414 189 94 0 0 chr4 108786948 108786980 -46843140 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1414 765 160 0 8 chr4 108786982 108787114 -46843006 - B1_Mus2 SINE Alu -5 142 12 7 1414 488 243 7 60 chr4 108787114 108787131 -46842989 - ID_B1 SINE B4 -5 219 79 7 1414 418 268 75 107 chr4 108787608 108788021 -46842099 + RMER10A LTR ERVL 18 417 -25 7 1414 393 306 18 0 chr4 108788342 108788453 -46841667 + PB1D10 SINE Alu 5 117 0 7 1414 212 0 0 35 chr4 108788467 108788496 -46841624 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1415 500 135 42 0 chr4 108792060 108792156 -46837964 + ORR1D1 LTR MaLR 1 100 -274 7 1415 297 206 111 0 chr4 108792156 108792219 -46837901 + ID4_ SINE ID 3 72 -11 7 1415 979 265 125 36 chr4 108792249 108792613 -46837507 - MTD LTR MaLR -14 405 12 7 1415 1436 55 33 0 chr4 108792685 108792866 -46837254 + B2_Mm2 SINE B2 1 187 -8 7 1415 292 238 100 140 chr4 108792883 108793005 -46837115 + L1MC1 LINE L1 5910 6017 -316 7 1415 722 281 15 10 chr4 108793005 108793203 -46836917 - B3 SINE B2 -17 199 1 7 1415 292 238 100 140 chr4 108793203 108793280 -46836840 + L1MC1 LINE L1 6018 6101 -232 7 1415 306 278 40 73 chr4 108793318 108793442 -46836678 + PB1D9 SINE Alu 1 120 0 7 1415 418 230 44 80 chr4 108793502 108793596 -46836524 + L1MC1 LINE L1 6187 6276 -57 7 1415 297 0 0 0 chr4 108793596 108793629 -46836491 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1415 210 105 0 0 chr4 108793630 108793668 -46836452 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 7 1415 418 230 44 80 chr4 108793668 108793708 -46836412 + L1MC1 LINE L1 6277 6318 -15 7 1415 24 67 0 0 chr4 108794412 108794457 -46835663 + AT_rich Low_complexity Low_complexity 1 45 0 7 1415 519 60 0 0 chr4 108794566 108794633 -46835487 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1415 185 0 40 0 chr4 108794633 108794657 -46835463 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1415 1016 115 0 7 chr4 108794657 108794797 -46835323 - B1_Mur3 SINE Alu -10 139 1 7 1415 312 27 0 0 chr4 108794869 108794906 -46835214 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1415 265 349 0 23 chr4 108794906 108794994 -46835126 - RSINE1 SINE B4 -64 101 16 7 1415 1394 151 119 25 chr4 108795803 108796081 -46834039 - RLTR19-int LTR ERVK -5707 430 127 7 1415 451 179 48 0 chr4 108796724 108796808 -46833312 + RSINE1 SINE B4 42 129 -36 7 1415 579 126 0 0 chr4 108796823 108796918 -46833202 + (GA)n Simple_repeat Simple_repeat 2 96 0 7 1415 1077 226 36 139 chr4 108797330 108797741 -46832379 - MTE2a LTR MaLR -9 370 2 7 1415 36 0 0 0 chr4 108797890 108797926 -46832194 + AT_rich Low_complexity Low_complexity 1 36 0 7 1415 472 261 14 24 chr4 108797977 108798119 -46832001 - RSINE1 SINE B4 -21 144 5 7 1415 241 154 30 30 chr4 108798267 108798334 -46831786 + (TATG)n Simple_repeat Simple_repeat 4 70 0 7 1415 594 167 0 0 chr4 108798426 108798534 -46831586 + (GGCTG)n Simple_repeat Simple_repeat 1 108 0 7 1415 598 291 5 49 chr4 108798534 108798718 -46831402 - B4A SINE B4 -116 176 1 7 1415 601 229 57 0 chr4 108799104 108799244 -46830876 - B1F1 SINE Alu -1 148 1 7 1415 555 16 0 0 chr4 108799723 108799787 -46830333 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1415 897 81 0 0 chr4 108799787 108799909 -46830211 + (GA)n Simple_repeat Simple_repeat 1 123 0 7 1415 451 223 72 58 chr4 108800242 108800380 -46829740 + B1_Mur3 SINE Alu 1 140 -9 7 1415 610 128 212 0 chr4 108801054 108801214 -46828906 - URR1B DNA MER1_type 0 225 32 7 1415 4147 156 28 10 chr4 108801589 108802281 -46827839 + RMER1B Other Other 363 1066 0 7 1415 661 252 0 0 chr4 108802347 108802478 -46827642 - B1_Mur1 SINE Alu -18 131 1 7 1415 422 191 100 0 chr4 108802608 108802718 -46827402 + ID_B1 SINE B4 87 207 -17 7 1415 3950 60 22 2 chr4 108802741 108803244 -46826876 + L1_Mus2 LINE L1 6053 6565 -1 7 1415 264 150 167 0 chr4 108804604 108804664 -46825456 + PB1D10 SINE Alu 32 101 -16 7 1415 422 205 10 12 chr4 108805623 108805722 -46824398 - PB1D7 SINE Alu -5 115 12 7 1415 796 258 127 53 chr4 108806644 108807115 -46823005 + L1MA6 LINE L1 5742 6247 -53 7 1415 680 80 0 10 chr4 108807181 108807282 -46822838 + (GGGA)n Simple_repeat Simple_repeat 2 101 0 7 1415 904 149 13 39 chr4 108807292 108807446 -46822674 + B1_Mur4 SINE Alu 1 150 0 7 1415 1082 174 119 0 chr4 108807736 108807937 -46822183 + URR1B DNA MER1_type 1 225 0 7 1415 489 34 0 0 chr4 108808175 108808234 -46821886 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 7 1415 896 144 0 0 chr4 108808235 108808374 -46821746 - B1_Mus1 SINE Alu 0 148 10 7 1415 21 36 0 0 chr4 108808535 108808563 -46821557 + AT_rich Low_complexity Low_complexity 1 28 0 7 1415 29 0 0 0 chr4 108808713 108808742 -46821378 + AT_rich Low_complexity Low_complexity 1 29 0 7 1415 418 255 19 0 chr4 108808864 108808970 -46821150 + B3A SINE B2 2 109 -89 7 1415 267 31 0 0 chr4 108809537 108809569 -46820551 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1415 420 208 0 0 chr4 108809730 108809807 -46820313 + L1MEg LINE L1 1233 1309 -4933 7 1415 398 309 66 0 chr4 108809981 108810133 -46819987 - L1M2 LINE L1 -1133 5010 4849 7 1415 435 242 57 32 chr4 108810135 108810293 -46819827 + RSINE1 SINE B4 4 165 0 7 1415 1228 34 7 0 chr4 108810556 108810702 -46819418 - B1_Mus2 SINE Alu 0 147 1 7 1415 502 228 8 58 chr4 108810763 108810884 -46819236 - RSINE1 SINE B4 -48 117 3 7 1415 26 0 0 0 chr4 108810893 108810919 -46819201 + AT_rich Low_complexity Low_complexity 1 26 0 7 1415 246 284 101 14 chr4 108810919 108811137 -46818983 + L1MEg LINE L1 4457 4693 -1453 7 1415 394 296 118 33 chr4 108811557 108811886 -46818234 + L1MEg LINE L1 4774 5130 -1016 7 1415 245 197 16 0 chr4 108812219 108812280 -46817840 + CT-rich Low_complexity Low_complexity 1 62 0 7 1415 459 214 58 33 chr4 108812292 108812413 -46817707 - B1_Mm SINE Alu -22 125 2 7 1415 797 231 154 8 chr4 108812468 108812721 -46817399 + B4A SINE B4 3 292 0 7 1415 552 303 32 0 chr4 108812786 108812941 -46817179 + RSINE1 SINE B4 4 163 -2 7 1415 687 123 1 3 chr4 108813110 108813215 -46816905 - L1_Mm LINE L1 -1196 4947 4847 7 1415 180 250 0 40 chr4 108813230 108813280 -46816840 + MIRc SINE MIR 113 160 -108 7 1415 8243 85 17 6 chr4 108813458 108815338 -46814782 + L1_Mus1 LINE L1 4667 6566 -1 7 1415 1238 110 40 0 chr4 108815359 108815532 -46814588 + B2_Mm2 SINE B2 2 181 -14 7 1415 785 107 8 0 chr4 108815536 108815658 -46814462 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 7 1415 639 256 22 27 chr4 108815780 108815965 -46814155 - B3A SINE B2 -14 184 1 7 1415 628 251 23 6 chr4 108816492 108816664 -46813456 + ORR1E LTR MaLR 18 192 -167 7 1415 1414 226 63 11 chr4 108816969 108817318 -46812802 - MTE2a LTR MaLR -10 369 3 7 1415 250 279 114 25 chr4 108817330 108817488 -46812632 + L2a LINE L2 3249 3420 -6 7 1415 183 156 0 0 chr4 108817526 108817558 -46812562 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 7 1415 768 181 29 0 chr4 108817558 108817696 -46812424 - B1_Mur2 SINE Alu -6 143 2 7 1415 238 355 19 0 chr4 108818620 108818727 -46811393 + (TG)n Simple_repeat Simple_repeat 1 109 0 7 1415 340 207 183 0 chr4 108818731 108818813 -46811307 - B4A SINE B4 0 292 196 7 1415 435 214 11 0 chr4 108818827 108818916 -46811204 - B4A SINE B4 -201 91 2 7 1415 436 293 36 43 chr4 108818923 108819062 -46811058 + B1F1 SINE Alu 10 147 -2 7 1415 1177 75 0 0 chr4 108819321 108819468 -46810652 + B1_Mus2 SINE Alu 1 147 0 7 1415 452 238 57 16 chr4 108819490 108819614 -46810506 + B1F SINE Alu 1 129 -20 7 1415 212 321 65 9 chr4 108820798 108820905 -46809215 + MIRb SINE MIR 64 176 -92 7 1415 819 151 58 0 chr4 108820955 108821094 -46809026 + B1_Mus1 SINE Alu 2 148 0 7 1415 297 329 20 34 chr4 108821449 108821597 -46808523 + MTEb LTR MaLR 223 377 -2 7 1415 236 313 15 0 chr4 108822647 108822714 -46807406 - PB1D10 SINE Alu -7 110 43 7 1415 24 0 0 0 chr4 108822732 108822756 -46807364 + AT_rich Low_complexity Low_complexity 1 24 0 7 1415 186 216 107 13 chr4 108823006 108823081 -46807039 - MER5A DNA MER1_type -107 82 1 7 1415 987 86 55 41 chr4 108823085 108823231 -46806889 + B1_Mus1 SINE Alu 1 148 0 7 1415 180 179 0 0 chr4 108823231 108823270 -46806850 + A-rich Low_complexity Low_complexity 1 39 0 7 1415 759 245 120 0 chr4 108823631 108823823 -46806297 + ID_B1 SINE B4 2 216 -8 7 1415 212 376 53 0 chr4 108823889 108824022 -46806098 + MIR SINE MIR 123 262 0 7 1415 254 260 55 55 chr4 108824089 108824199 -46805921 + PB1D10 SINE Alu 1 110 -7 7 1415 273 196 0 0 chr4 108824199 108824255 -46805865 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 7 1415 264 254 14 0 chr4 108824333 108824404 -46805716 + MADE2 DNA Mariner 1 72 -8 7 1415 663 192 222 71 chr4 108824411 108824663 -46805457 + B4A SINE B4 2 291 -1 7 1415 283 317 40 74 chr4 108824831 108824919 -46805201 + MER102c DNA MER1_type 40 128 -2300 7 1415 396 0 0 0 chr4 108824919 108824963 -46805157 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8 1415 283 306 31 81 chr4 108824963 108825061 -46805059 + MER102c DNA MER1_type 110 206 -125 7 1415 538 258 0 16 chr4 108825116 108825238 -46804882 - RSINE1 SINE B4 0 165 46 8 1415 199 303 11 199 chr4 108825601 108825873 -46804247 + L2 LINE L2 1609 1829 -1590 8 1415 356 261 176 50 chr4 108825943 108826266 -46803854 + L2 LINE L2 1982 2345 -1074 8 1415 459 294 87 24 chr4 108826424 108826685 -46803435 + L1ME1 LINE L1 5836 6118 -60 8 1415 22 0 0 0 chr4 108826691 108826713 -46803407 + AT_rich Low_complexity Low_complexity 1 22 0 8 1415 270 56 0 0 chr4 108826737 108826773 -46803347 + (CTA)n Simple_repeat Simple_repeat 2 37 0 8 1415 242 206 84 42 chr4 108826903 108826974 -46803146 - RSINE1 SINE B4 -90 75 2 8 1415 353 327 67 34 chr4 108827023 108827232 -46802888 + L2 LINE L2 2648 2863 -556 8 1415 359 198 37 0 chr4 108827270 108827351 -46802769 - B1F SINE Alu 0 149 66 8 1415 319 265 32 124 chr4 108830882 108830935 -46799185 + L1MB8 LINE L1 5986 6030 -148 8 1415 484 259 51 8 chr4 108830935 108831052 -46799068 - PB1 SINE Alu -5 122 1 8 1415 319 265 32 124 chr4 108831052 108831183 -46798937 + L1MB8 LINE L1 6031 6153 -25 8 1415 899 235 52 0 chr4 108831183 108831396 -46798724 - ID_B1 SINE B4 0 224 1 8 1415 287 273 23 153 chr4 108831396 108831426 -46798694 + L1MB7 LINE L1 6140 6172 -12 8 1415 795 119 0 0 chr4 108831471 108831589 -46798531 - B3 SINE B2 -97 119 2 8 1415 263 179 90 0 chr4 108831732 108831799 -46798321 - ID4_ SINE ID -9 74 2 8 1415 1218 61 0 0 chr4 108832017 108832164 -46797956 - B1_Mus1 SINE Alu 0 148 2 8 1415 270 230 8 47 chr4 108833146 108833274 -46796846 + BC1_Mm scRNA scRNA 14 136 -16 8 1415 529 240 208 0 chr4 108833576 108833759 -46796361 - 7SK RNA RNA -97 234 14 8 1415 249 189 111 0 chr4 108834222 108834303 -46795817 - L1M5 LINE L1 -719 5443 5355 8 1415 277 296 66 56 chr4 108834390 108834587 -46795533 - L1M5 LINE L1 -933 5213 5015 8 1415 334 302 9 0 chr4 108835120 108835226 -46794894 + MER94 DNA AcHobo 2 108 -26 8 1415 799 124 29 7 chr4 108835616 108835754 -46794366 - B1_Mus1 SINE Alu 0 148 8 8 1415 342 257 97 9 chr4 108835659 108835773 -46794347 - B4A SINE B4 -98 194 71 8 1415 189 74 0 0 chr4 108836005 108836032 -46794088 + (CGAG)n Simple_repeat Simple_repeat 2 28 0 8 1415 294 179 0 0 chr4 108836377 108836433 -46793687 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 8 1415 358 197 0 0 chr4 108836456 108836522 -46793598 - B1_Mm SINE Alu -45 102 37 8 1415 769 237 10 40 chr4 108836525 108836723 -46793397 - B3A SINE B2 -2 196 5 8 1415 363 291 239 0 chr4 108836806 108836923 -46793197 - RSINE1 SINE B4 -13 152 8 8 1415 244 270 17 59 chr4 108836929 108837047 -46793073 - L1M5 LINE L1 -1890 4256 4144 8 1415 289 298 102 30 chr4 108837226 108837392 -46792728 + B4A SINE B4 1 178 -114 8 1415 439 196 44 18 chr4 108837607 108837721 -46792399 + PB1D10 SINE Alu 1 117 0 8 1415 926 142 0 28 chr4 108838086 108838231 -46791889 + B1_Mur4 SINE Alu 2 142 -8 8 1415 2336 118 40 20 chr4 108838755 108839160 -46790960 + MTC LTR MaLR 1 413 -8 8 1415 675 262 43 24 chr4 108839119 108839330 -46790790 - ID_B1 SINE B4 -7 217 3 8 1415 1655 83 8 36 chr4 108839685 108839936 -46790184 - L1_Mus3 LINE L1 -1 6637 6394 8 1415 335 271 155 26 chr4 108840106 108840261 -46789859 + MLT1E2 LTR MaLR 343 517 -110 8 1415 1365 74 11 0 chr4 108840317 108840493 -46789627 + B2_Mm1t SINE B2 2 179 -14 8 1415 292 74 324 63 chr4 108840540 108840651 -46789469 + B2_Mm2 SINE B2 47 186 -9 8 1415 494 217 331 19 chr4 108840657 108840932 -46789188 - L1MB3 LINE L1 -27 6156 5798 8 1415 321 86 33 33 chr4 108840932 108840992 -46789128 - MTE2b LTR MaLR 0 379 320 8 1415 2569 71 0 12 chr4 108841242 108841586 -46788534 - L1Md_F2 LINE L1 -1 6581 6242 8 1415 453 281 106 49 chr4 108841749 108841871 -46788249 + L1MC5 LINE L1 7007 7138 -823 8 1415 1586 32 11 0 chr4 108841871 108842056 -46788064 + B2_Mm1a SINE B2 2 188 -5 8 1415 453 281 106 49 chr4 108842056 108842319 -46787801 + L1MC5 LINE L1 7139 7414 -547 8 1415 348 242 66 0 chr4 108842452 108842543 -46787577 + PB1 SINE Alu 24 120 -7 8 1415 286 275 66 0 chr4 108842980 108843071 -46787049 + PB1D7 SINE Alu 23 119 -1 8 1415 991 117 7 0 chr4 108843114 108843259 -46786861 - B1_Mus1 SINE Alu -1 147 2 8 1415 249 264 129 23 chr4 108843695 108843827 -46786293 + MER33 DNA MER1_type 1 146 -178 8 1415 538 186 29 0 chr4 108843850 108843952 -46786168 - B1_Mur1 SINE Alu -16 133 29 8 1415 597 140 84 0 chr4 108843978 108844085 -46786035 + RLTR20A LTR ERVK 65 180 -361 8 1415 942 141 0 0 chr4 108844086 108844242 -46785878 + (GA)n Simple_repeat Simple_repeat 1 156 0 8 1415 1190 117 17 6 chr4 108844243 108844423 -46785697 + B2_Mm1t SINE B2 2 183 -10 8 1415 1245 34 0 0 chr4 108844433 108844580 -46785540 + B1_Mus2 SINE Alu 1 147 0 8 1415 282 194 0 0 chr4 108846084 108846146 -46783974 + C-rich Low_complexity Low_complexity 5 66 0 8 1415 260 193 34 5 chr4 108846661 108846746 -46783374 + B1F SINE Alu 30 144 -5 8 1415 308 167 0 0 chr4 108847031 108847085 -46783035 - LTR68 LTR ERV1 0 740 687 8 1415 819 206 87 5 chr4 108847329 108847524 -46782596 + B3 SINE B2 1 211 -5 8 1415 475 241 118 52 chr4 108847555 108847708 -46782412 + RSINE1 SINE B4 3 165 0 8 1415 315 0 0 0 chr4 108847872 108847907 -46782213 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1415 3691 14 117 26 chr4 108849161 108849613 -46780507 - MT2_Mm LTR ERVL 0 493 1 8 1415 351 0 0 0 chr4 108849655 108849694 -46780426 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1415 491 254 59 0 chr4 108850140 108850258 -46779862 - ID_B1 SINE B4 -2 222 98 8 1415 545 230 8 60 chr4 108850293 108850390 -46779730 - RSINE1 SINE B4 -19 146 57 8 1415 910 77 0 24 chr4 108850390 108850555 -46779565 + B1_Mm SINE Alu 1 148 0 8 1415 16631 110 30 64 chr4 108850576 108850913 -46779207 + L1_Mus4 LINE L1 2950 3285 -3351 8 1415 994 42 3 22 chr4 108850913 108851076 -46779044 + B1_Mus1 SINE Alu 1 148 -2 8 1415 16631 110 30 64 chr4 108851076 108854430 -46775690 + L1_Mus4 LINE L1 3286 6636 0 8 1415 739 229 90 5 chr4 108854470 108854659 -46775461 - B3 SINE B2 -10 206 2 8 1415 268 275 24 24 chr4 108854778 108854860 -46775260 + ID4 SINE ID 1 82 -1 8 1415 4345 53 11 9 chr4 108855123 108855680 -46774440 + L1_Mus3 LINE L1 6080 6637 -1 8 1415 735 47 8 1 chr4 108856718 108856833 -46773287 - B1_Mus1 SINE Alu 0 120 2 8 1415 362 216 0 105 chr4 108856738 108856852 -46773268 - MT2B LTR ERVL -351 250 149 8 1415 244 218 0 52 chr4 108856836 108856894 -46773226 - B1F SINE Alu -1 148 94 8 1415 549 184 33 39 chr4 108856983 108857148 -46772972 - RMER1A Other Other 0 1066 911 8 1415 1024 252 167 16 chr4 108857259 108857577 -46772543 - RMER1B Other Other -150 916 551 8 1415 739 295 34 33 chr4 108857559 108857878 -46772242 - RMER1B Other Other -651 415 62 8 1415 431 270 26 17 chr4 108857906 108858023 -46772097 - RSINE1 SINE B4 -45 120 3 8 1415 556 274 46 77 chr4 108858339 108858600 -46771520 - MER46C DNA MER2_type -73 265 13 8 1415 224 286 14 0 chr4 108858704 108858774 -46771346 - ID4 SINE ID -10 73 3 8 1415 299 215 0 0 chr4 108858804 108858869 -46771251 - B1F1 SINE Alu -69 80 16 8 1415 460 308 33 27 chr4 108859649 108859799 -46770321 + RSINE1 SINE B4 15 165 0 8 1415 1277 46 97 6 chr4 108860151 108860326 -46769794 + B2_Mm2 SINE B2 2 192 -3 8 1415 482 246 23 45 chr4 108860415 108860547 -46769573 - RSINE1 SINE B4 -33 132 4 8 1415 477 0 0 0 chr4 108860549 108860602 -46769518 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 8 1415 828 255 170 19 chr4 108860616 108861039 -46769081 + L1M4 LINE L1 5319 5805 -373 8 1415 196 93 22 44 chr4 108861045 108861090 -46769030 + (TTATA)n Simple_repeat Simple_repeat 1 44 0 8 1415 726 298 13 13 chr4 108861101 108861332 -46768788 + Lx7 LINE L1 7038 7268 -428 8 1415 791 78 8 0 chr4 108861428 108861557 -46768563 + (GA)n Simple_repeat Simple_repeat 1 130 0 8 1415 239 196 149 47 chr4 108861562 108861669 -46768451 + Lx8 LINE L1 7356 7473 0 8 1415 663 206 98 22 chr4 108862091 108862275 -46767845 + B3 SINE B2 4 201 -15 8 1415 248 236 97 0 chr4 108862752 108862824 -46767296 + PB1D10 SINE Alu 39 117 0 8 1415 429 306 8 0 chr4 108862917 108863038 -46767082 - ID_B1 SINE B4 -10 214 93 8 1415 262 232 110 0 chr4 108863191 108863273 -46766847 + PB1D10 SINE Alu 27 117 0 8 1415 1106 50 43 0 chr4 108863277 108863418 -46766702 + B1_Mus2 SINE Alu 1 147 0 8 1415 225 0 0 0 chr4 108863418 108863443 -46766677 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1415 261 180 0 0 chr4 108863444 108863494 -46766626 + GA-rich Low_complexity Low_complexity 1 50 0 8 1415 246 128 21 0 chr4 108863792 108863839 -46766281 + PB1D7 SINE Alu 61 108 -12 8 1415 369 186 69 49 chr4 108864728 108864830 -46765290 - B4A SINE B4 0 292 189 8 1415 355 292 9 19 chr4 108865022 108865130 -46764990 + PB1D10 SINE Alu 10 116 -1 8 1415 1009 231 34 0 chr4 108865240 108865448 -46764672 + B3 SINE B2 2 216 0 8 1415 1301 67 72 11 chr4 108865473 108865654 -46764466 + B2_Mm2 SINE B2 2 193 -2 8 1415 339 313 107 28 chr4 108866104 108866357 -46763763 + L2 LINE L2 1937 2209 -1210 8 1415 684 239 227 12 chr4 108866524 108866859 -46763261 + MLT1F1 LTR MaLR 163 569 0 8 1415 211 208 0 0 chr4 108866924 108866972 -46763148 + L2 LINE L2 2341 2388 -1031 8 1415 514 266 81 6 chr4 108867009 108867183 -46762937 - B4A SINE B4 -105 187 1 8 1415 223 253 11 92 chr4 108867368 108867455 -46762665 + RSINE1 SINE B4 86 165 0 8 1415 350 310 40 0 chr4 108867689 108867789 -46762331 + ID_B1 SINE B4 84 187 -37 8 1415 1121 82 14 0 chr4 108867789 108867935 -46762185 + B1_Mus1 SINE Alu 1 148 0 8 1415 258 105 0 0 chr4 108868001 108868039 -46762081 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 8 1415 2183 122 20 17 chr4 108868077 108868435 -46761685 + RLTR15 LTR ERVK 1 359 0 9 1415 225 203 85 0 chr4 108869221 108869280 -46760840 + 4.5SRNA scRNA scRNA 25 88 -6 9 1415 297 174 143 14 chr4 108869228 108869298 -46760822 + PB1D7 SINE Alu 35 113 -7 9 1415 821 215 31 159 chr4 108869315 108869545 -46760575 + B4A SINE B4 4 230 -62 9 1415 1125 174 59 10 chr4 108869545 108869748 -46760372 + B3 SINE B2 1 213 -3 9 1415 821 215 31 159 chr4 108869748 108869838 -46760282 + B4A SINE B4 231 283 -9 9 1415 1116 58 7 0 chr4 108870166 108870303 -46759817 - B1_Mus1 SINE Alu -9 139 2 9 1415 594 276 144 23 chr4 108870456 108870712 -46759408 - B4A SINE B4 -1 291 5 9 1415 254 276 0 155 chr4 108870880 108870907 -46759213 + MT2B LTR ERVL 144 239 -360 9 1415 299 325 0 11 chr4 108870907 108870994 -46759126 + B4 SINE B4 84 169 -123 9 1415 483 188 0 0 chr4 108870918 108870998 -46759122 + PB1D9 SINE Alu 9 88 -32 9 1415 384 22 0 0 chr4 108871005 108871050 -46759070 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1415 246 270 108 0 chr4 108871120 108871194 -46758926 + ID4_ SINE ID 2 83 0 9 1415 809 179 12 43 chr4 108871235 108871398 -46758722 + RSINE1 SINE B4 4 161 -4 9 1415 327 231 0 0 chr4 108873291 108873356 -46756764 + ID4_ SINE ID 1 65 -18 9 1415 398 224 26 118 chr4 108873495 108873647 -46756473 + MIRb SINE MIR 63 200 -68 9 1415 363 186 118 0 chr4 108875099 108875201 -46754919 + PB1D10 SINE Alu 4 117 0 9 1415 290 339 9 0 chr4 108875207 108875319 -46754801 + GA-rich Low_complexity Low_complexity 4 116 0 9 1415 285 296 0 0 chr4 108875479 108875550 -46754570 + ID_B1 SINE B4 145 215 -9 9 1415 650 174 69 42 chr4 108875595 108875739 -46754381 - B1_Mur2 SINE Alu 0 149 2 9 1415 1293 66 21 21 chr4 108875777 108875963 -46754157 + B2_Mm2 SINE B2 4 189 -6 9 1415 381 178 13 27 chr4 108875984 108876059 -46754061 + B3 SINE B2 127 200 -16 9 1415 1273 223 176 49 chr4 108876137 108876608 -46753512 - MT2A LTR ERVL 0 533 3 9 1415 358 258 0 0 chr4 108876719 108876785 -46753335 + ID4_ SINE ID 5 70 -13 9 1415 755 269 47 14 chr4 108877180 108877395 -46752725 + B4A SINE B4 10 231 -61 9 1415 193 98 49 0 chr4 108877415 108877456 -46752664 + (GGGTG)n Simple_repeat Simple_repeat 4 46 0 9 1415 725 157 75 0 chr4 108877456 108877590 -46752530 + B1_Mur4 SINE Alu 2 145 -5 9 1415 479 189 0 32 chr4 108877593 108877686 -46752434 + RSINE1 SINE B4 16 105 -60 9 1415 446 240 31 74 chr4 108877686 108877750 -46752370 + B3A SINE B2 14 163 -35 9 1415 254 214 18 0 chr4 108878232 108878288 -46751832 - tRNA-Ala-GCY_ tRNA tRNA -14 61 5 9 1415 372 209 42 42 chr4 108878324 108878419 -46751701 - PB1D10 SINE Alu -2 115 21 9 1415 959 259 25 74 chr4 108878471 108878796 -46751324 + RLTR18 LTR ERVK 1 309 -307 9 1415 1210 256 19 10 chr4 108878848 108879160 -46750960 + RLTR18B LTR ERVK 198 512 0 9 1415 580 288 73 25 chr4 108879195 108879469 -46750651 - B4A SINE B4 -5 287 1 9 1415 238 142 18 39 chr4 108879626 108879690 -46750430 + B1F1 SINE Alu 87 148 -1 9 1415 301 294 118 0 chr4 108879783 108879885 -46750235 - ID_B1 SINE B4 -8 216 103 9 1415 385 261 0 129 chr4 108880024 108880156 -46749964 - PB1D10 SINE Alu -2 115 1 9 1415 354 45 0 0 chr4 108880298 108880342 -46749778 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1415 452 18 18 0 chr4 108880524 108880581 -46749539 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 9 1415 750 254 132 0 chr4 108880938 108881127 -46748993 - ID_B1 SINE B4 -1 223 10 9 1415 227 341 0 12 chr4 108881706 108881789 -46748331 - ID4 SINE ID 0 83 2 9 1415 1189 49 0 0 chr4 108882140 108882282 -46747838 + B1_Mm SINE Alu 1 142 -5 9 1415 354 98 0 0 chr4 108882287 108882338 -46747782 + (GAAAA)n Simple_repeat Simple_repeat 4 54 0 9 1415 884 232 39 5 chr4 108882379 108882587 -46747533 + B3 SINE B2 2 216 0 9 1415 180 0 0 0 chr4 108882623 108882643 -46747477 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 1415 25 0 0 0 chr4 108882652 108882677 -46747443 + AT_rich Low_complexity Low_complexity 1 25 0 9 1415 876 214 18 37 chr4 108882864 108883082 -46747038 - B3 SINE B2 0 216 3 9 1415 202 289 0 0 chr4 108884530 108884582 -46745538 + (CAG)n Simple_repeat Simple_repeat 2 53 0 9 1415 420 299 60 60 chr4 108884623 108884875 -46745245 - RLTR26 LTR ERVK -223 419 168 9 1415 723 234 0 7 chr4 108885274 108885420 -46744700 + B1_Mus2 SINE Alu 3 147 0 9 1415 500 0 17 0 chr4 108885433 108885493 -46744627 + (GA)n Simple_repeat Simple_repeat 2 62 0 9 1415 274 294 96 40 chr4 108885548 108885725 -46744395 + ORSL DNA Tip100 1 187 -88 9 1415 787 293 73 11 chr4 108885768 108886041 -46744079 - B4 SINE B4 -1 291 2 9 1415 255 206 14 14 chr4 108886053 108886122 -46743998 + ORSL DNA Tip100 197 265 -10 9 1415 439 130 0 0 chr4 108886144 108886213 -46743907 + PB1D10 SINE Alu 42 110 -7 9 1415 278 272 25 58 chr4 108886381 108886502 -46743618 + PB1D10 SINE Alu 1 117 0 9 1415 742 137 30 0 chr4 108886571 108886702 -46743418 + URR1B DNA MER1_type 91 225 0 9 1415 416 344 87 8 chr4 108886866 108887118 -46743002 + MLT1A1 LTR MaLR 70 341 -67 9 1415 207 0 0 0 chr4 108887123 108887146 -46742974 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 9 1415 280 300 75 0 chr4 108887177 108887257 -46742863 - PB1 SINE Alu -41 86 1 9 1415 259 286 29 0 chr4 108887412 108887482 -46742638 + ID_B1 SINE B4 124 195 -29 9 1415 345 218 0 0 chr4 108887484 108887562 -46742558 + GA-rich Low_complexity Low_complexity 3 80 0 9 1415 202 333 0 43 chr4 108887768 108887837 -46742283 - L2c LINE L2 -38 3349 3284 9 1415 387 288 93 12 chr4 108888122 108888294 -46741826 + MER20 DNA MER1_type 34 219 0 9 1415 981 234 33 0 chr4 108888626 108888840 -46741280 - ID_B1 SINE B4 -3 221 1 9 1415 386 307 0 34 chr4 108888853 108888971 -46741149 - PB1D10 SINE Alu -2 115 2 9 1415 375 286 9 18 chr4 108889020 108889134 -46740986 - PB1D10 SINE Alu -3 114 2 9 1415 234 0 0 0 chr4 108889165 108889191 -46740929 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1415 469 170 99 10 chr4 108889318 108889419 -46740701 - PB1D9 SINE Alu -5 115 6 9 1415 322 282 117 0 chr4 108889455 108889558 -46740562 + PB1D10 SINE Alu 3 117 0 9 1415 469 212 224 71 chr4 108889589 108889772 -46740348 + B3 SINE B2 2 212 -4 9 1415 263 333 72 24 chr4 108890105 108890314 -46739806 + MIRb SINE MIR 40 258 -10 9 1415 226 236 18 0 chr4 108890608 108890663 -46739457 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 9 1415 275 274 7 121 chr4 108891553 108891694 -46738426 - B1_Mur4 SINE Alu -14 136 12 9 1415 593 257 91 23 chr4 108891610 108891785 -46738335 - ID_B1 SINE B4 -33 191 5 9 1415 501 32 0 0 chr4 108892131 108892194 -46737926 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 9 1415 22 0 0 0 chr4 108892510 108892532 -46737588 + AT_rich Low_complexity Low_complexity 1 22 0 9 1415 1431 64 21 11 chr4 108892532 108892722 -46737398 + B2_Mm2 SINE B2 1 192 -3 9 1415 326 182 265 60 chr4 108892732 108892849 -46737271 + B1F SINE Alu 1 141 -8 9 1415 378 0 0 0 chr4 108893715 108893757 -46736363 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1415 265 344 31 0 chr4 108893997 108894093 -46736027 + L2 LINE L2 2552 2650 -769 9 1415 263 175 0 17 chr4 108894131 108894189 -46735931 + GA-rich Low_complexity Low_complexity 1 57 0 9 1415 346 232 10 40 chr4 108894189 108894288 -46735832 + ID_B1 SINE B4 122 217 -7 9 1415 944 110 20 7 chr4 108894489 108894635 -46735485 - B1_Mur3 SINE Alu -1 148 1 9 1415 344 218 167 10 chr4 108894635 108894736 -46735384 - PB1D9 SINE Alu -1 119 2 9 1415 260 260 100 0 chr4 108894737 108894837 -46735283 - PB1D10 SINE Alu -5 112 3 9 1415 270 337 32 0 chr4 108895158 108895253 -46734867 - ID_B1 SINE B4 -41 183 86 9 1415 1176 41 7 7 chr4 108895276 108895423 -46734697 - B1_Mus2 SINE Alu 0 147 1 9 1415 234 0 0 0 chr4 108895509 108895535 -46734585 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1415 21 0 0 0 chr4 108895634 108895655 -46734465 + AT_rich Low_complexity Low_complexity 1 21 0 9 1415 1593 47 5 0 chr4 108895657 108895849 -46734271 + B2_Mm1a SINE B2 1 193 0 9 1415 309 203 39 39 chr4 108895895 108895972 -46734148 + ID4_ SINE ID 1 77 -6 9 1415 403 241 134 0 chr4 108896338 108896450 -46733670 + ID_B1 SINE B4 80 206 -18 9 1415 491 280 0 0 chr4 108896725 108896850 -46733270 + ID_B1 SINE B4 100 224 0 9 1415 191 321 58 58 chr4 108897061 108897147 -46732973 - MIRb SINE MIR -180 88 3 9 1415 351 242 39 29 chr4 108897383 108897485 -46732635 - MIR SINE MIR -61 147 45 9 1415 195 345 35 0 chr4 108898153 108898240 -46731880 + MIR SINE MIR 50 139 -123 9 1415 367 111 0 0 chr4 108898781 108898835 -46731285 + B1_Mur4 SINE Alu 1 54 -96 9 1415 1575 199 88 7 chr4 108898802 108899180 -46730940 - MTD LTR MaLR -13 387 2 9 1415 440 272 2 21 chr4 108899270 108899386 -46730734 + B4A SINE B4 109 223 -69 9 1415 222 227 15 29 chr4 108899387 108899455 -46730665 + (CATA)n Simple_repeat Simple_repeat 3 69 0 9 1415 244 348 0 0 chr4 108899757 108899826 -46730294 + ID4 SINE ID 4 72 -11 9 1415 375 78 0 0 chr4 108899829 108899880 -46730240 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1415 211 237 17 0 chr4 108899960 108900019 -46730101 + B4A SINE B4 2 61 -231 1 1415 267 288 27 0 chr4 108900186 108900297 -46729823 + Lx9 LINE L1 7515 7628 -16 1 1415 704 201 7 29 chr4 108900685 108900823 -46729297 - B1_Mur1 SINE Alu -7 142 8 1 1415 423 315 118 0 chr4 108901031 108901158 -46728962 - RSINE1 SINE B4 -18 147 6 1 1415 277 207 35 0 chr4 108901258 108901316 -46728804 - PB1D10 SINE Alu -21 96 37 1 1415 286 250 109 0 chr4 108901580 108901644 -46728476 + RSINE1 SINE B4 37 107 -58 1 1415 347 312 10 0 chr4 108901778 108901874 -46728246 + PB1D10 SINE Alu 1 97 -20 1 1415 230 290 8 130 chr4 108902760 108902837 -46727283 + L2c LINE L2 3271 3332 -55 1 1415 288 335 37 43 chr4 108902837 108902999 -46727121 + MIR3 SINE MIR 4 164 -44 1 1415 805 250 50 0 chr4 108903139 108903339 -46726781 - B3 SINE B2 -6 210 1 1 1415 401 301 115 37 chr4 108903816 108904033 -46726087 + MIRb SINE MIR 27 260 -8 1 1415 190 308 62 0 chr4 108904133 108904198 -46725922 + MIRb SINE MIR 19 87 -181 1 1415 2074 172 98 10 chr4 108904199 108904586 -46725534 - MTC LTR MaLR 0 421 1 1 1415 1290 113 16 0 chr4 108904933 108905118 -46725002 + B2_Mm2 SINE B2 2 189 -6 1 1415 228 149 27 82 chr4 108905233 108905306 -46724814 - MER34 LTR ERV1 -52 490 422 1 1415 1544 206 113 0 chr4 108905325 108905689 -46724431 - MTD LTR MaLR -14 405 1 1 1415 333 0 0 0 chr4 108905732 108905769 -46724351 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1415 1047 37 0 0 chr4 108905769 108905904 -46724216 - B1_Mm SINE Alu -2 145 11 1 1415 282 308 0 62 chr4 108905972 108906069 -46724051 + ID_B1 SINE B4 80 170 -54 1 1415 723 259 117 14 chr4 108906110 108906392 -46723728 - MER34 LTR ERV1 -157 385 75 1 1415 876 189 73 10 chr4 108906413 108906605 -46723515 - B3 SINE B2 -2 214 11 1 1415 239 250 0 45 chr4 108906601 108906668 -46723452 - MER34 LTR ERV1 -455 87 24 1 1415 477 97 0 0 chr4 108906671 108906743 -46723377 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1415 369 309 0 0 chr4 108906829 108906913 -46723207 + PB1D7 SINE Alu 23 106 -14 1 1415 969 278 11 44 chr4 108906932 108907207 -46722913 + B4 SINE B4 9 274 -18 1 1415 240 238 0 0 chr4 108907262 108907325 -46722795 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1415 224 316 67 58 chr4 108907327 108907340 -46722780 + B4 SINE B4 73 86 -206 1 1415 379 245 0 69 chr4 108907340 108907441 -46722679 + PB1D10 SINE Alu 1 94 -23 1 1415 183 80 0 0 chr4 108908569 108908594 -46721526 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1 1415 469 281 82 0 chr4 108908602 108908737 -46721383 + B1F SINE Alu 1 146 -3 1 1415 243 310 87 39 chr4 108908814 108909022 -46721098 - MIR SINE MIR -44 218 1 1 1415 189 0 0 0 chr4 108909878 108909899 -46720221 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1415 336 287 46 0 chr4 108909899 108910007 -46720113 - PB1D10 SINE Alu 0 117 5 1 1415 506 278 136 88 chr4 108910349 108910420 -46719700 + B4A SINE B4 6 76 -216 1 1415 738 195 153 26 chr4 108910420 108910610 -46719510 + B3 SINE B2 3 216 0 1 1415 506 278 136 88 chr4 108910610 108910810 -46719310 + B4A SINE B4 77 290 -2 1 1415 22 0 0 0 chr4 108910885 108910907 -46719213 + AT_rich Low_complexity Low_complexity 1 22 0 1 1415 262 330 9 27 chr4 108911161 108911273 -46718847 + MIRb SINE MIR 126 235 -33 1 1415 192 200 0 0 chr4 108912176 108912216 -46717904 + C-rich Low_complexity Low_complexity 1 40 0 1 1415 387 252 180 0 chr4 108912322 108912433 -46717687 - B1F1 SINE Alu -15 134 4 1 1415 221 196 21 0 chr4 108912524 108912572 -46717548 - MIR SINE MIR -106 162 110 1 1415 1096 183 28 24 chr4 108912689 108912902 -46717218 + B3 SINE B2 3 216 0 1 1415 227 290 29 0 chr4 108912945 108913014 -46717106 + B1_Mur2 SINE Alu 23 93 -56 1 1415 180 0 0 0 chr4 108913431 108913451 -46716669 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1 1415 309 231 44 0 chr4 108913564 108913655 -46716465 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1415 220 338 140 7 chr4 108913793 108913936 -46716184 + MIRb SINE MIR 20 181 -87 1 1415 2411 164 29 10 chr4 108913955 108914368 -46715752 + MTC LTR MaLR 1 421 0 1 1415 231 275 54 68 chr4 108914515 108914663 -46715457 + LTR33 LTR ERVL 361 506 -9 1 1415 985 240 34 0 chr4 108914893 108915097 -46715023 - B3 SINE B2 -5 211 1 1 1415 1158 106 6 0 chr4 108915131 108915301 -46714819 + B2_Mm1t SINE B2 1 171 -22 1 1415 293 106 371 19 chr4 108915352 108915457 -46714663 + B2_Mm2 SINE B2 47 188 -7 1 1415 186 281 16 0 chr4 108915465 108915529 -46714591 - MIRb SINE MIR -70 198 134 1 1415 375 262 112 0 chr4 108915836 108915943 -46714177 + PB1 SINE Alu 9 127 0 1 1415 220 234 12 72 chr4 108916001 108916084 -46714036 - L2b LINE L2 -188 3187 3110 1 1415 494 206 0 0 chr4 108917551 108917643 -46712477 + PB1D10 SINE Alu 21 112 -5 1 1415 1015 60 0 0 chr4 108918004 108918137 -46711983 - B1_Mus1 SINE Alu -13 135 3 1 1415 780 73 169 46 chr4 108918491 108918621 -46711499 - B1_Mus2 SINE Alu -1 146 1 1 1415 511 183 11 0 chr4 108919306 108919399 -46710721 - ID_B1 SINE B4 -8 216 123 1 1415 180 0 0 0 chr4 108919666 108919686 -46710434 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1415 246 105 0 0 chr4 108919782 108919820 -46710300 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1415 520 304 7 20 chr4 108919822 108919970 -46710150 - RSINE1 SINE B4 -16 149 4 1 1415 255 167 0 0 chr4 108920513 108920579 -46709541 + GA-rich Low_complexity Low_complexity 1 66 0 1 1416 572 231 241 18 chr4 108921371 108921591 -46708529 - B4A SINE B4 -23 269 1 1 1416 906 188 0 7 chr4 108922330 108922480 -46707640 - B1_Mur2 SINE Alu 0 149 1 1 1416 667 200 21 49 chr4 108922709 108922851 -46707269 - B1_Mur1 SINE Alu -7 142 5 1 1416 463 287 15 44 chr4 108922877 108923012 -46707108 - ID_B1 SINE B4 -13 211 81 1 1416 200 259 19 0 chr4 108923037 108923091 -46707029 - MIR SINE MIR -147 115 61 1 1416 501 264 122 32 chr4 108923346 108923534 -46706586 + B3 SINE B2 1 205 -11 1 1416 393 39 0 0 chr4 108923551 108923602 -46706518 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1416 758 258 65 43 chr4 108923607 108923886 -46706234 - B4A SINE B4 -6 286 2 1 1416 220 266 147 26 chr4 108924177 108924293 -46705827 - MIRb SINE MIR -50 218 89 1 1416 235 297 122 0 chr4 108924657 108924731 -46705389 + B4 SINE B4 2 84 -208 1 1416 256 158 0 0 chr4 108924751 108924789 -46705331 - ID4 SINE ID -35 48 11 1 1416 428 290 27 20 chr4 108924797 108924945 -46705175 - B1F SINE Alu 0 149 1 1 1416 217 329 14 14 chr4 108924945 108925016 -46705104 - RSINE1 SINE B4 -92 73 3 1 1416 241 312 26 0 chr4 108925084 108925161 -46704959 - ID4 SINE ID -3 80 2 1 1416 281 307 10 10 chr4 108925187 108925289 -46704831 + MIR SINE MIR 12 113 -149 1 1416 699 194 82 0 chr4 108925429 108925563 -46704557 + B1_Mur2 SINE Alu 5 149 0 1 1416 226 163 40 20 chr4 108925579 108925629 -46704491 + PB1D10 SINE Alu 67 117 0 1 1416 22 35 0 0 chr4 108925798 108925827 -46704293 + AT_rich Low_complexity Low_complexity 1 29 0 1 1416 435 262 88 14 chr4 108925864 108926011 -46704109 - RSINE1 SINE B4 -5 160 3 1 1416 28 0 0 0 chr4 108926013 108926041 -46704079 + AT_rich Low_complexity Low_complexity 1 28 0 1 1416 456 204 124 0 chr4 108926048 108926161 -46703959 - ID_B1 SINE B4 -3 221 95 1 1416 339 355 0 0 chr4 108926352 108926524 -46703596 + GA-rich Low_complexity Low_complexity 3 174 0 1 1416 22 0 0 0 chr4 108927031 108927053 -46703067 + AT_rich Low_complexity Low_complexity 1 22 0 1 1416 279 281 90 0 chr4 108927365 108927454 -46702666 - MIRb SINE MIR -161 107 11 1 1416 228 209 179 0 chr4 108927629 108927696 -46702424 + B1F SINE Alu 65 143 -6 1 1416 272 183 83 0 chr4 108927639 108927699 -46702421 + ID_B1 SINE B4 157 221 -3 1 1416 363 268 75 66 chr4 108928029 108928167 -46701953 - B1F1 SINE Alu -9 141 1 1 1416 332 325 132 0 chr4 108928208 108928322 -46701798 + RSINE1 SINE B4 11 139 -26 1 1416 24 32 0 0 chr4 108928335 108928366 -46701754 + AT_rich Low_complexity Low_complexity 1 31 0 1 1416 917 212 65 5 chr4 108929282 108929481 -46700639 - B3 SINE B2 -5 211 1 1 1416 875 144 0 7 chr4 108930072 108930226 -46699894 + CT-rich Low_complexity Low_complexity 3 155 0 1 1416 342 218 287 0 chr4 108930230 108930331 -46699789 - B1_Mur1 SINE Alu -13 136 7 1 1416 198 71 0 0 chr4 108930462 108930490 -46699630 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 1 1416 414 252 0 0 chr4 108930671 108930787 -46699333 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 1416 3253 51 2 8 chr4 108930787 108931185 -46698935 + MTA_Mm LTR MaLR 1 396 0 1 1416 414 252 0 0 chr4 108931185 108931191 -46698929 + (TA)n Simple_repeat Simple_repeat 1 6 0 1 1416 21 0 0 0 chr4 108931203 108931224 -46698896 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 24 67 0 0 chr4 108931463 108931508 -46698612 + AT_rich Low_complexity Low_complexity 1 45 0 1 1416 36 0 0 0 chr4 108931626 108931662 -46698458 + AT_rich Low_complexity Low_complexity 1 36 0 1 1416 607 212 58 0 chr4 108931699 108931836 -46698284 + B3 SINE B2 59 203 -13 1 1416 1201 62 7 0 chr4 108931859 108932005 -46698115 + B1_Mus2 SINE Alu 1 147 0 1 1416 745 180 50 0 chr4 108932019 108932158 -46697962 + B1_Mur3 SINE Alu 4 149 0 1 1416 234 0 0 0 chr4 108932173 108932199 -46697921 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1416 250 339 0 0 chr4 108932311 108932376 -46697744 + PB1D10 SINE Alu 36 100 -17 1 1416 419 248 111 21 chr4 108932705 108932849 -46697271 - LTR48 LTR ERV1 -627 160 4 1 1416 234 174 22 0 chr4 108932903 108932949 -46697171 - PB1D7 SINE Alu -1 119 73 1 1416 197 351 18 18 chr4 108933086 108933199 -46696921 + MIRb SINE MIR 111 223 -45 1 1416 51 0 0 0 chr4 108933235 108933286 -46696834 + AT_rich Low_complexity Low_complexity 1 51 0 1 1416 836 245 61 5 chr4 108933286 108933483 -46696637 - B3 SINE B2 -8 208 1 1 1416 439 288 27 0 chr4 108933513 108933624 -46696496 + PB1D10 SINE Alu 2 115 -2 1 1416 3217 31 0 25 chr4 108934139 108934533 -46695587 + L1Md_F2 LINE L1 6197 6580 -2 1 1416 288 331 28 34 chr4 108934535 108934713 -46695407 + MIRb SINE MIR 36 212 -56 1 1416 587 285 40 91 chr4 108935114 108935411 -46694709 + MLT1M LTR MaLR 138 419 -253 1 1416 337 266 8 68 chr4 108935725 108935842 -46694278 + RSINE1 SINE B4 35 144 -21 1 1416 186 103 0 0 chr4 108935858 108935887 -46694233 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1416 276 100 0 0 chr4 108936040 108936080 -46694040 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 1 1416 209 339 86 9 chr4 108936171 108936310 -46693810 + MIR SINE MIR 51 201 -61 1 1416 198 0 0 0 chr4 108936310 108936332 -46693788 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1416 209 340 103 19 chr4 108936332 108936363 -46693757 + MIR SINE MIR 202 232 -30 1 1416 387 0 0 0 chr4 108936402 108936445 -46693675 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1416 528 172 43 0 chr4 108936448 108936541 -46693579 - B1_Mus1 SINE Alu -12 136 40 1 1416 327 181 107 12 chr4 108936563 108936647 -46693473 - PB1D10 SINE Alu -18 99 8 1 1416 282 326 132 34 chr4 108936809 108937308 -46692812 - L2 LINE L2 -792 2627 2080 1 1416 384 284 11 0 chr4 108937535 108937630 -46692490 + RSINE1 SINE B4 2 97 -68 1 1416 515 196 20 30 chr4 108937852 108937952 -46692168 + PB1D9 SINE Alu 1 99 -21 1 1416 832 258 158 72 chr4 108937964 108938767 -46691353 + L1MC4a LINE L1 6207 7086 -956 1 1416 512 241 26 0 chr4 108938782 108938898 -46691222 + ID_B1 SINE B4 87 205 -19 1 1416 323 189 256 0 chr4 108939160 108939250 -46690870 + PB1D10 SINE Alu 5 117 0 1 1416 289 278 135 32 chr4 108939264 108939420 -46690700 + L1MC4a LINE L1 7561 7732 -310 1 1416 637 208 143 20 chr4 108939422 108939618 -46690502 - MTD LTR MaLR -2 417 198 1 1416 2086 222 158 79 chr4 108939626 108940277 -46689843 - MTD-int LTR MaLR -245 1013 294 1 1416 565 242 0 0 chr4 108940277 108940397 -46689723 - PB1D9 SINE Alu 0 120 1 1 1416 2086 222 158 79 chr4 108940397 108940526 -46689594 - MTD-int LTR MaLR -965 293 155 1 1416 1558 58 16 0 chr4 108940526 108940717 -46689403 - B2_Mm2 SINE B2 0 195 2 1 1416 2086 222 158 79 chr4 108940717 108940873 -46689247 - MTD-int LTR MaLR -1104 154 2 1 1416 1487 223 42 32 chr4 108940885 108941288 -46688832 - MTD LTR MaLR -12 407 1 1 1416 709 202 77 17 chr4 108941288 108941457 -46688663 + ID_B1 SINE B4 45 224 0 1 1416 333 304 35 9 chr4 108941720 108941833 -46688287 - L1M3 LINE L1 -555 5629 5514 1 1416 462 114 0 0 chr4 108941856 108941944 -46688176 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1416 376 259 88 18 chr4 108941945 108942059 -46688061 - RSINE1 SINE B4 -40 125 4 1 1416 436 236 24 95 chr4 108942143 108942342 -46687778 - L1M3 LINE L1 -815 5488 5296 1 1416 962 147 153 25 chr4 108942546 108942742 -46687378 - ID_B1 SINE B4 -2 222 2 1 1416 331 349 15 15 chr4 108942774 108942905 -46687215 - RSINE1 SINE B4 -31 134 4 1 1416 535 323 97 34 chr4 108942912 108943357 -46686763 - L1M3 LINE L1 -1828 4312 3840 1 1416 330 264 11 195 chr4 108943376 108943434 -46686686 - ID_B1 SINE B4 -5 219 163 1 1416 3388 60 2 25 chr4 108943434 108943880 -46686240 + L1_Mus1 LINE L1 6132 6567 0 1 1416 376 264 11 195 chr4 108943880 108943995 -46686125 - ID_B1 SINE B4 -62 162 78 1 1416 696 255 14 0 chr4 108944013 108944154 -46685966 - ID_B1 SINE B4 0 224 82 1 1416 349 241 48 0 chr4 108944198 108944281 -46685839 - B4A SINE B4 0 292 206 1 1416 293 267 123 9 chr4 108944300 108944406 -46685714 + B4A SINE B4 169 286 -6 1 1416 859 159 27 14 chr4 108944675 108944822 -46685298 + B1_Mur4 SINE Alu 1 149 -1 1 1416 707 243 64 37 chr4 108944994 108945182 -46684938 - B3 SINE B2 0 216 24 1 1416 896 207 59 25 chr4 108945207 108945410 -46684710 - B3 SINE B2 -6 210 1 1 1416 276 365 73 59 chr4 108945426 108945729 -46684391 - L2 LINE L2 -573 2846 2540 1 1416 218 189 0 0 chr4 108946064 108946101 -46684019 + CT-rich Low_complexity Low_complexity 4 40 0 1 1416 266 180 16 0 chr4 108946104 108946165 -46683955 + C-rich Low_complexity Low_complexity 5 66 0 1 1416 943 233 39 10 chr4 108946168 108946372 -46683748 - ID_B1 SINE B4 -13 211 2 1 1416 181 355 43 21 chr4 108946429 108946570 -46683550 + MIR SINE MIR 18 161 -101 1 1416 260 343 139 33 chr4 108946961 108947181 -46682939 - MIRb SINE MIR -23 245 7 1 1416 277 243 39 10 chr4 108948714 108948802 -46681318 + CT-rich Low_complexity Low_complexity 20 109 0 1 1416 292 226 48 16 chr4 108948802 108948865 -46681255 - ID4_ SINE ID -17 66 2 1 1416 277 243 39 10 chr4 108948865 108948880 -46681240 + polypyrimidine Low_complexity Low_complexity 4 19 0 1 1416 491 292 100 79 chr4 108948910 108948967 -46681153 - B4A SINE B4 -7 285 231 1 1416 1221 61 0 0 chr4 108948967 108949115 -46681005 - B1_Mus1 SINE Alu 0 148 1 1 1416 491 292 100 79 chr4 108949115 108949336 -46680784 - B4A SINE B4 -62 230 1 1 1416 321 82 450 28 chr4 108949619 108949707 -46680413 - B2_Mm2 SINE B2 -9 186 65 1 1416 306 0 0 0 chr4 108949707 108949741 -46680379 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1416 234 140 96 39 chr4 108949741 108949754 -46680366 - B2_Mm2 SINE B2 -131 64 47 1 1416 648 121 0 0 chr4 108949843 108949942 -46680178 - B2_Mm2 SINE B2 -95 100 2 1 1416 334 300 41 16 chr4 108950118 108950240 -46679880 + MIRb SINE MIR 68 192 -76 1 1416 397 314 0 0 chr4 108950772 108950874 -46679246 + RSINE1 SINE B4 4 105 -60 1 1416 297 0 0 0 chr4 108950886 108950919 -46679201 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1416 1606 173 202 3 chr4 108951016 108951358 -46678762 + MTC LTR MaLR 10 419 -2 1 1416 1147 88 0 0 chr4 108951686 108951834 -46678286 + B1_Mus1 SINE Alu 1 148 0 1 1416 261 0 0 0 chr4 108951936 108951965 -46678155 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1416 198 0 0 0 chr4 108952130 108952152 -46677968 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1416 389 148 373 18 chr4 108952170 108952280 -46677840 - B1_Mur2 SINE Alu 0 149 1 1 1416 825 193 0 14 chr4 108952359 108952506 -46677614 + B1_Mur3 SINE Alu 2 146 -3 1 1416 225 0 0 0 chr4 108952853 108952878 -46677242 + (CGGGG)n Simple_repeat Simple_repeat 3 27 0 1 1416 39 80 0 0 chr4 108953216 108953304 -46676816 + GC_rich Low_complexity Low_complexity 1 88 0 1 1416 780 248 71 43 chr4 108954224 108954435 -46675685 - ID_B1 SINE B4 -4 220 4 1 1416 288 0 0 0 chr4 108954487 108954519 -46675601 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1416 1098 211 5 15 chr4 108955260 108955462 -46674658 - B3 SINE B2 -15 201 2 1 1416 452 275 218 0 chr4 108955526 108955755 -46674365 - B4A SINE B4 -13 279 1 1 1416 391 248 28 19 chr4 108955941 108956048 -46674072 - PB1 SINE Alu -16 111 4 1 1416 231 36 0 0 chr4 108956215 108956243 -46673877 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 1416 437 196 144 19 chr4 108956279 108956383 -46673737 - PB1D9 SINE Alu 0 120 4 1 1416 626 215 38 119 chr4 108956724 108956909 -46673211 + B3 SINE B2 19 188 -28 1 1416 260 310 62 101 chr4 108956921 108957050 -46673070 - L2a LINE L2 -6 3420 3297 1 1416 369 222 110 8 chr4 108957214 108957341 -46672779 + B1_Mm SINE Alu 8 147 0 1 1416 442 271 115 59 chr4 108957354 108957524 -46672596 + Lx9 LINE L1 7308 7473 -171 1 1416 456 19 0 0 chr4 108957524 108957577 -46672543 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1416 442 271 115 59 chr4 108957577 108957692 -46672428 + Lx9 LINE L1 7474 7609 -35 1 1416 283 271 30 44 chr4 108957772 108957907 -46672213 - BC1_Mm scRNA scRNA -15 137 5 1 1416 405 206 35 61 chr4 108957892 108958006 -46672114 - B1_Mur3 SINE Alu -37 112 2 1 1416 256 221 46 128 chr4 108957908 108958017 -46672103 - MT2B LTR ERVL -348 253 154 1 1416 1614 115 54 58 chr4 108958017 108958330 -46671790 - MTC LTR MaLR 0 421 110 1 1416 1178 48 0 7 chr4 108958334 108958480 -46671640 + B1_Mus2 SINE Alu 1 145 -2 1 1416 449 246 169 0 chr4 108958624 108958754 -46671366 - ID_B1 SINE B4 -5 219 68 1 1416 378 247 0 0 chr4 108958806 108958883 -46671237 - ID4 SINE ID 0 83 7 1 1416 21 0 0 0 chr4 108959045 108959066 -46671054 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 241 311 123 0 chr4 108959114 108959220 -46670900 - MIRc SINE MIR -32 236 118 1 1416 238 196 54 0 chr4 108959592 108959648 -46670472 - L1MC LINE L1 -2130 5752 5694 1 1416 803 231 33 74 chr4 108959727 108959942 -46670178 - B3 SINE B2 -10 206 1 1 1416 687 247 23 35 chr4 108960395 108960567 -46669553 - B3 SINE B2 -7 209 40 1 1416 22 0 0 0 chr4 108960665 108960687 -46669433 + AT_rich Low_complexity Low_complexity 1 22 0 1 1416 532 267 19 70 chr4 108961227 108961384 -46668736 - ID_B1 SINE B4 0 224 76 1 1416 303 247 54 43 chr4 108961435 108961528 -46668592 - PB1D9 SINE Alu -5 115 22 1 1416 233 182 0 18 chr4 108961629 108961685 -46668435 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1416 670 291 32 0 chr4 108961686 108961844 -46668276 - RSINE1 SINE B4 0 165 3 1 1416 907 148 42 14 chr4 108962008 108962152 -46667968 - B1_Mur4 SINE Alu -2 148 1 1 1416 659 254 100 53 chr4 108962161 108962202 -46667918 - L1M4 LINE L1 -1658 4488 4452 1 1416 1232 113 16 5 chr4 108962202 108962389 -46667731 - B2_Mm2 SINE B2 -6 189 1 1 1416 659 254 100 53 chr4 108962389 108962726 -46667394 - L1M4 LINE L1 -1695 4451 4093 1 1416 202 118 29 0 chr4 108962817 108962851 -46667269 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1416 333 0 0 0 chr4 108962851 108962888 -46667232 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1416 644 164 0 0 chr4 108962924 108963028 -46667092 - B1_Mur3 SINE Alu 0 149 46 1 1416 572 196 0 18 chr4 108963677 108963786 -46666334 - PB1D9 SINE Alu -13 107 1 1 1416 6329 59 17 7 chr4 108963938 108964755 -46665365 - L1Md_F2 LINE L1 0 6582 5758 1 1416 9787 59 7 6 chr4 108964755 108966072 -46664048 + L1Md_F2 LINE L1 4412 5729 -154 1 1416 383 274 40 8 chr4 108966100 108966225 -46663895 - BLACKJACK DNA AcHobo -25 2919 2791 1 1416 497 287 31 8 chr4 108966230 108966360 -46663760 - B1F SINE Alu -1 148 16 1 1416 797 251 117 140 chr4 108966363 108966719 -46663401 - BLACKJACK DNA AcHobo -707 2237 1892 1 1416 936 270 35 3 chr4 108966719 108967001 -46663119 - B4A SINE B4 0 292 2 1 1416 797 251 117 140 chr4 108967001 108967301 -46662819 - BLACKJACK DNA AcHobo -1053 1891 1596 1 1416 396 299 72 81 chr4 108967351 108967573 -46662547 - BLACKJACK DNA AcHobo -2087 857 638 1 1416 30 27 0 0 chr4 108967803 108967840 -46662280 + AT_rich Low_complexity Low_complexity 1 37 0 1 1416 497 227 126 0 chr4 108967851 108967970 -46662150 - RSINE1 SINE B4 -21 144 11 1 1416 361 307 132 76 chr4 108967870 108968226 -46661894 - BLACKJACK DNA AcHobo -2482 462 87 1 1416 555 250 17 0 chr4 108968282 108968398 -46661722 + PB1D9 SINE Alu 3 120 0 1 1416 209 125 25 0 chr4 108968406 108968446 -46661674 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1416 356 40 20 0 chr4 108968714 108968764 -46661356 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1416 1876 187 81 84 chr4 108970065 108970801 -46659319 + RMER19B LTR ERVK 3 901 -1 1 1416 329 267 27 118 chr4 108971006 108971137 -46658983 - PB1D10 SINE Alu -1 119 1 1 1416 528 301 37 8 chr4 108971357 108971491 -46658629 + ID_B1 SINE B4 80 217 -7 1 1416 255 200 57 0 chr4 108971530 108971600 -46658520 - LTR37A LTR ERV1 -241 185 112 1 1416 774 56 0 0 chr4 108971705 108971813 -46658307 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1416 587 233 85 0 chr4 108971817 108971946 -46658174 - ID_B1 SINE B4 -7 217 78 1 1416 21 36 0 0 chr4 108972200 108972228 -46657892 + AT_rich Low_complexity Low_complexity 1 28 0 1 1416 1611 37 0 0 chr4 108972228 108972415 -46657705 - B2_Mm1a SINE B2 -5 188 2 1 1416 370 323 0 0 chr4 108972429 108972528 -46657592 - PB1 SINE Alu -28 99 1 1 1416 280 361 0 36 chr4 108972566 108972598 -46657522 - PB1D10 SINE Alu -5 112 5 1 1416 374 288 0 0 chr4 108972598 108972678 -46657442 - ID_B1 SINE B4 -59 165 86 1 1416 375 224 47 0 chr4 108972702 108972787 -46657333 - PB1D10 SINE Alu -7 110 22 1 1416 550 278 15 8 chr4 108972799 108972933 -46657187 - ID_B1 SINE B4 -12 212 78 1 1416 559 305 112 44 chr4 108973144 108973394 -46656726 - B4 SINE B4 -2 290 24 1 1416 363 206 0 29 chr4 108973980 108974050 -46656070 + PB1D10 SINE Alu 45 112 -5 1 1416 276 253 49 69 chr4 108974057 108974159 -46655961 + PB1D10 SINE Alu 5 104 -13 1 1416 368 20 0 20 chr4 108974169 108974219 -46655901 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1416 349 200 24 49 chr4 108974439 108974521 -46655599 + PB1 SINE Alu 47 116 -1 1 1416 754 138 12 105 chr4 108974808 108974970 -46655150 - B1_Mus2 SINE Alu 0 147 1 1 1416 311 285 79 24 chr4 108974970 108975086 -46655034 - B1_Mur1 SINE Alu -9 140 17 1 1416 1046 233 10 10 chr4 108975087 108975295 -46654825 + B3 SINE B2 1 208 -8 1 1416 1219 127 111 37 chr4 108975316 108975586 -46654534 + Lx LINE L1 6365 6654 0 1 1416 1147 75 0 7 chr4 108975630 108975777 -46654343 - B1_Mm SINE Alu -1 146 1 1 1416 394 293 0 0 chr4 108975801 108975883 -46654237 - ID4 SINE ID 0 83 2 1 1416 996 113 83 17 chr4 108976424 108976604 -46653516 - B2_Mm2 SINE B2 -2 193 2 1 1416 21 0 0 0 chr4 108977130 108977151 -46652969 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 384 22 0 0 chr4 108978749 108978794 -46651326 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1416 1019 213 35 0 chr4 108978968 108979165 -46650955 - B3 SINE B2 -12 204 1 1 1416 277 340 122 59 chr4 108979591 108979813 -46650307 - ORR1E LTR MaLR -123 236 1 1 1416 641 281 65 58 chr4 108979904 108980180 -46649940 - B4 SINE B4 -13 279 2 1 1416 208 315 174 40 chr4 108980286 108980435 -46649685 - MIRb SINE MIR -68 200 32 1 1416 263 279 0 0 chr4 108980727 108980795 -46649325 + GA-rich Low_complexity Low_complexity 1 68 0 1 1416 222 37 0 0 chr4 108980812 108980839 -46649281 + (CACG)n Simple_repeat Simple_repeat 2 28 0 1 1416 294 271 0 33 chr4 108980851 108980912 -46649208 - ID4_ SINE ID -24 59 1 1 1416 31 26 0 0 chr4 108981830 108981868 -46648252 + AT_rich Low_complexity Low_complexity 1 38 0 1 1416 944 274 31 21 chr4 108981874 108982161 -46647959 + B4A SINE B4 3 292 0 1 1416 1459 65 16 0 chr4 108982190 108982374 -46647746 + B2_Mm2 SINE B2 2 188 -7 1 1416 775 193 20 20 chr4 108983154 108983302 -46646818 - B1_Mus1 SINE Alu 0 148 1 1 1416 23 33 0 0 chr4 108983467 108983497 -46646623 + AT_rich Low_complexity Low_complexity 1 30 0 1 1416 1115 75 0 13 chr4 108983505 108983654 -46646466 - B1_Mm SINE Alu 0 147 1 1 1416 317 295 39 0 chr4 108984039 108984117 -46646003 - ID4 SINE ID -2 81 1 1 1416 1091 217 14 9 chr4 108984166 108984380 -46645740 + B3 SINE B2 1 215 -1 1 1416 225 0 0 0 chr4 108985632 108985657 -46644463 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 1416 417 221 4 0 chr4 108985664 108985748 -46644372 - PB1D10 SINE Alu -51 98 13 1 1416 191 36 36 0 chr4 108986026 108986054 -46644066 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1416 460 264 112 0 chr4 108986066 108986191 -46643929 - B3 SINE B2 -77 139 1 1 1416 411 295 25 51 chr4 108986414 108986532 -46643588 - RSINE1 SINE B4 -10 155 41 1 1416 717 238 11 0 chr4 108986703 108986884 -46643236 + L1_Mur3 LINE L1 3859 4041 -1839 1 1416 630 188 0 0 chr4 108986898 108986999 -46643121 - B1_Mur2 SINE Alu -31 118 18 1 1416 3254 55 5 5 chr4 108987034 108987471 -46642649 - Lx3_Mus LINE L1 -90 6919 6483 1 1416 223 325 109 30 chr4 108987778 108987943 -46642177 + MIRb SINE MIR 57 234 -34 1 1416 715 182 58 0 chr4 108988054 108988191 -46641929 - B1_Mur3 SINE Alu -1 148 4 1 1416 2650 92 3 8 chr4 108989046 108989431 -46640689 - L1_Mus4 LINE L1 -1 6635 6253 1 1416 797 192 7 14 chr4 108989441 108989589 -46640531 - B1_Mus1 SINE Alu 0 148 2 1 1416 271 315 0 0 chr4 108990247 108990320 -46639800 + MER5A DNA MER1_type 42 114 -75 1 1416 23 0 0 0 chr4 108990462 108990485 -46639635 + AT_rich Low_complexity Low_complexity 1 23 0 1 1416 385 232 73 10 chr4 108990527 108990623 -46639497 - PB1D10 SINE Alu -6 111 10 1 1416 193 234 85 0 chr4 108990669 108990716 -46639404 + MIRc SINE MIR 95 145 -123 1 1416 1330 82 5 11 chr4 108990954 108991138 -46638982 - B2_Mm1t SINE B2 -9 184 2 1 1416 1124 64 0 0 chr4 108991146 108991302 -46638818 - L1Md_F2 LINE L1 0 6582 6427 1 1416 899 162 0 26 chr4 108991919 108992071 -46638049 - B1_Mus1 SINE Alu 0 148 1 1 1416 465 311 129 43 chr4 108992071 108992326 -46637794 - L1MC LINE L1 -2059 5823 5547 1 1416 615 296 153 65 chr4 108992331 108992841 -46637279 - MER34A1 LTR ERV1 0 587 33 1 1416 276 315 49 66 chr4 108992858 108993144 -46636976 - L1MC LINE L1 -2340 5542 5262 1 1416 226 194 0 61 chr4 108993276 108993342 -46636778 + T-rich Low_complexity Low_complexity 3 64 0 1 1416 898 154 14 0 chr4 108993359 108993502 -46636618 + B1_Mur3 SINE Alu 5 149 0 1 1416 362 310 0 0 chr4 108993518 108993605 -46636515 - RMER12 LTR ERVK -466 856 770 1 1416 24 0 0 0 chr4 108994827 108994851 -46635269 + AT_rich Low_complexity Low_complexity 1 24 0 1 1416 556 295 83 0 chr4 108995178 108995371 -46634749 + ID_B1 SINE B4 2 210 -14 1 1416 219 214 0 0 chr4 108995393 108995435 -46634685 + CT-rich Low_complexity Low_complexity 3 44 0 1 1416 288 0 0 0 chr4 108995447 108995479 -46634641 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1416 475 224 59 0 chr4 108995480 108995632 -46634488 - L1_Rod LINE L1 -87 5760 5600 1 1416 1207 282 80 24 chr4 108996028 108996493 -46633627 - Lx8 LINE L1 -16 7457 6967 1 1416 469 265 59 29 chr4 108997057 108997193 -46632927 - ID_B1 SINE B4 -8 216 77 1 1416 436 296 9 7 chr4 108997634 108997750 -46632370 + PB1 SINE Alu 12 125 -2 1 1416 216 0 0 0 chr4 108998506 108998530 -46631590 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1416 25 0 0 0 chr4 108998572 108998597 -46631523 + AT_rich Low_complexity Low_complexity 1 25 0 1 1416 959 194 50 15 chr4 108999025 108999224 -46630896 + B3 SINE B2 1 206 -10 1 1416 742 248 12 18 chr4 108999253 108999421 -46630699 + B3 SINE B2 40 206 -10 1 1416 22 0 0 0 chr4 108999901 108999923 -46630197 + AT_rich Low_complexity Low_complexity 1 22 0 1 1416 462 304 0 17 chr4 109000000 109000117 -46630003 + B1F SINE Alu 25 139 -10 1 1416 1253 34 0 0 chr4 109000640 109000786 -46629334 - B1_Mm SINE Alu 0 147 2 2 1416 1193 122 11 5 chr4 109000972 109001161 -46628959 - B2_Mm2 SINE B2 -4 191 2 3 1416 202 312 78 0 chr4 109001234 109001311 -46628809 - MIRc SINE MIR -96 172 90 4 1416 626 191 21 42 chr4 109001380 109001522 -46628598 + ID_B1 SINE B4 80 218 -6 5 1416 602 246 35 21 chr4 109001529 109001670 -46628450 + B3 SINE B2 3 145 -71 6 1416 270 0 0 0 chr4 109001674 109001704 -46628416 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1416 272 333 0 0 chr4 109002562 109002625 -46627495 + B4A SINE B4 228 290 -2 8 1416 245 98 24 0 chr4 109002648 109002689 -46627431 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1416 229 246 17 50 chr4 109002833 109002893 -46627227 - MER92C LTR ERV1 -199 355 298 1 1416 658 244 18 59 chr4 109003622 109003792 -46626328 - RSINE1 SINE B4 0 165 3 1 1416 686 204 14 21 chr4 109003956 109004101 -46626019 + B1_Mus2 SINE Alu 2 145 -2 1 1416 881 261 67 100 chr4 109004276 109004302 -46625818 - ORR1E LTR MaLR 0 359 340 1 1416 3685 40 12 60 chr4 109004302 109004801 -46625319 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1416 881 261 67 100 chr4 109004801 109005145 -46624975 - ORR1E LTR MaLR -20 339 1 1 1416 707 210 24 0 chr4 109005386 109005510 -46624610 - B1_Mur1 SINE Alu -21 128 2 1 1416 614 225 107 48 chr4 109005607 109005794 -46624326 - B3A SINE B2 0 198 1 1 1416 185 303 32 43 chr4 109006026 109006119 -46624001 - MIRb SINE MIR -36 232 141 1 1416 302 254 0 0 chr4 109006224 109006291 -46623829 - RSINE1 SINE B4 -97 68 2 1 1416 628 257 7 34 chr4 109006411 109006560 -46623560 - RSINE1 SINE B4 -17 148 4 1 1416 437 239 114 0 chr4 109007506 109007594 -46622526 + PB1D10 SINE Alu 15 112 -5 2 1416 251 200 182 34 chr4 109007870 109008046 -46622074 + MER33 DNA MER1_type 118 319 -5 2 1416 435 210 169 24 chr4 109008142 109008264 -46621856 + B1_Mus1 SINE Alu 2 148 0 2 1416 444 312 49 21 chr4 109008355 109008373 -46621747 + ID_B1 SINE B4 70 217 -7 2 1416 701 206 79 0 chr4 109008373 109008499 -46621621 + B1_Mur2 SINE Alu 7 142 -7 2 1416 22 0 0 0 chr4 109008524 109008546 -46621574 + AT_rich Low_complexity Low_complexity 1 22 0 2 1416 21 71 0 0 chr4 109008742 109008784 -46621336 + AT_rich Low_complexity Low_complexity 1 42 0 2 1416 390 228 128 50 chr4 109008951 109009131 -46620989 + B3A SINE B2 5 198 0 2 1416 351 60 0 0 chr4 109009184 109009234 -46620886 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1416 743 222 81 35 chr4 109009919 109010204 -46619916 - L1_Mur2 LINE L1 -5957 755 458 2 1416 383 214 17 148 chr4 109010339 109010454 -46619666 - PB1 SINE Alu -2 125 26 3 1416 227 192 114 13 chr4 109010458 109010537 -46619583 - L1MB3 LINE L1 -55 6128 6042 3 1416 728 235 62 24 chr4 109010923 109011132 -46618988 - ID_B1 SINE B4 -7 217 1 3 1416 432 264 237 6 chr4 109011166 109011501 -46618619 - L1M4c LINE L1 -4260 2124 1607 3 1416 412 213 146 23 chr4 109011501 109011631 -46618489 - B1_Mur1 SINE Alu -2 147 2 3 1416 459 301 70 58 chr4 109012818 109013061 -46617059 + B4A SINE B4 1 246 -46 3 1416 470 115 0 47 chr4 109013061 109013189 -46616931 + GA-rich Low_complexity Low_complexity 1 122 0 3 1416 351 0 0 0 chr4 109013206 109013245 -46616875 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1416 189 0 0 0 chr4 109013245 109013266 -46616854 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1416 225 267 0 0 chr4 109013334 109013394 -46616726 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 3 1416 22 0 0 0 chr4 109017303 109017325 -46612795 + AT_rich Low_complexity Low_complexity 1 22 0 4 1416 664 267 40 7 chr4 109017832 109017983 -46612137 - ID_B1 SINE B4 0 224 69 4 1416 718 241 73 47 chr4 109018239 109018310 -46611810 - B3 SINE B2 -19 197 125 4 1416 336 24 0 0 chr4 109018310 109018351 -46611769 + (TGG)n Simple_repeat Simple_repeat 1 41 0 4 1416 718 241 73 47 chr4 109018351 109018471 -46611649 - B3 SINE B2 -92 124 2 4 1416 391 224 0 0 chr4 109018512 109018579 -46611541 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 4 1416 3542 126 9 25 chr4 109018654 109019225 -46610895 - Lx2 LINE L1 -1 6996 6435 4 1416 3431 81 40 4 chr4 109019226 109019773 -46610347 + MusHAL1 LINE L1 1610 2176 -536 4 1416 235 268 28 110 chr4 109020046 109020155 -46609965 + B3A SINE B2 10 109 -89 4 1416 866 275 73 41 chr4 109020059 109020258 -46609862 + B4A SINE B4 24 237 -55 4 1416 1329 101 11 0 chr4 109020258 109020446 -46609674 + B2_Mm1t SINE B2 2 191 -2 4 1416 866 275 73 41 chr4 109020446 109020492 -46609628 + B4A SINE B4 238 276 -16 4 1416 3648 16 121 14 chr4 109020731 109021176 -46608944 + MT2_Mm LTR ERVL 1 493 0 5 1416 38772 16 14 0 chr4 109021176 109026463 -46603657 + MERVL-int LTR ERVL 1 5360 -125 5 1416 390 167 46 35 chr4 109026463 109026550 -46603570 + ORR1A3-int LTR MaLR 553 640 -1323 5 1416 302 0 0 0 chr4 109026550 109026588 -46603532 + MERVL-int LTR ERVL 5448 5485 0 5 1416 3648 16 121 14 chr4 109026588 109027033 -46603087 + MT2_Mm LTR ERVL 1 493 0 5 1416 462 282 129 34 chr4 109027071 109027218 -46602902 + RSINE1 SINE B4 3 163 -2 5 1416 245 217 184 75 chr4 109027218 109027245 -46602875 + B2_Mm2 SINE B2 2 194 -1 5 1416 831 215 12 30 chr4 109027278 109027446 -46602674 + B3 SINE B2 48 212 -4 5 1416 383 308 29 50 chr4 109027593 109027733 -46602387 - B1F2 SINE Alu 0 149 13 5 1416 248 333 0 14 chr4 109027682 109027752 -46602368 - B4A SINE B4 -144 148 80 5 1416 23 33 0 0 chr4 109028545 109028575 -46601545 + AT_rich Low_complexity Low_complexity 1 30 0 5 1416 497 277 166 18 chr4 109028602 109028771 -46601349 - B3 SINE B2 -14 202 9 5 1416 255 231 146 55 chr4 109028773 109028883 -46601237 - PB1D9 SINE Alu 0 120 1 5 1416 1196 50 0 0 chr4 109028989 109029130 -46600990 + B1_Mus2 SINE Alu 2 142 -5 6 1416 1026 162 65 20 chr4 109029571 109029772 -46600348 + B3 SINE B2 7 216 0 6 1416 203 175 25 0 chr4 109029932 109029972 -46600148 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1416 422 133 0 13 chr4 109030359 109030435 -46599685 - Lx3B LINE L1 -3 6970 6896 6 1416 251 292 30 40 chr4 109030524 109030624 -46599496 - U2 snRNA snRNA -1 187 89 6 1416 617 257 27 48 chr4 109030624 109030812 -46599308 + B3A SINE B2 1 184 -14 6 1416 300 236 0 0 chr4 109031157 109031212 -46598908 + BC1_Mm scRNA scRNA 19 73 -79 6 1416 437 235 86 98 chr4 109031304 109031559 -46598561 + L1MB8 LINE L1 5861 6112 -66 6 1416 727 139 16 0 chr4 109031624 109031746 -46598374 + B1_Mus2 SINE Alu 11 134 -13 6 1416 189 0 0 0 chr4 109031821 109031842 -46598278 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1416 355 266 195 0 chr4 109032026 109032139 -46597981 + ID_B1 SINE B4 84 218 -6 7 1416 472 262 118 40 chr4 109032163 109032437 -46597683 - L1MA5 LINE L1 -2 6298 6001 7 1416 369 121 45 0 chr4 109032602 109032668 -46597452 - B1_Mus2 SINE Alu 0 147 79 7 1416 2099 141 94 16 chr4 109032672 109033055 -46597065 - MTC LTR MaLR -8 413 1 7 1416 475 198 11 21 chr4 109033055 109033131 -46596989 - B1_Mus2 SINE Alu -63 84 10 7 1416 1101 101 43 32 chr4 109033136 109033321 -46596799 - MT2C_Mm LTR ERVL 0 475 289 7 1416 206 307 121 17 chr4 109033502 109033618 -46596502 - L2 LINE L2 -915 2504 2377 7 1416 466 304 126 23 chr4 109034610 109034785 -46595335 + MIR SINE MIR 10 202 -60 7 1416 2308 126 25 70 chr4 109034793 109034879 -46595241 + MTC LTR MaLR 32 117 -304 7 1416 797 191 14 14 chr4 109034879 109035022 -46595098 - B1_Mur3 SINE Alu -6 143 1 7 1416 2308 126 25 70 chr4 109035022 109035335 -46594785 + MTC LTR MaLR 118 413 -8 7 1416 923 265 37 15 chr4 109036074 109036346 -46593774 - B4 SINE B4 -14 278 1 7 1416 813 224 56 108 chr4 109036391 109036586 -46593534 - B3A SINE B2 -10 185 1 8 1416 394 306 15 53 chr4 109036651 109036782 -46593338 - ID_B1 SINE B4 -7 217 92 8 1416 519 316 127 12 chr4 109036798 109037057 -46593063 - B4A SINE B4 -2 290 2 8 1416 222 350 17 0 chr4 109037072 109037132 -46592988 - B1_Mur3 SINE Alu -88 61 1 8 1416 461 340 105 33 chr4 109037208 109037360 -46592760 - RSINE1 SINE B4 0 165 3 8 1416 420 260 9 71 chr4 109037360 109037472 -46592648 + PB1D10 SINE Alu 13 117 0 8 1416 295 260 40 2 chr4 109037493 109037577 -46592543 - PB1 SINE Alu -7 120 28 8 1416 447 19 0 0 chr4 109037772 109037824 -46592296 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1416 183 235 0 0 chr4 109037835 109037886 -46592234 + G-rich Low_complexity Low_complexity 1 51 0 8 1416 441 169 0 0 chr4 109037903 109037980 -46592140 - Lx9 LINE L1 -178 7466 7390 8 1416 258 346 12 12 chr4 109037994 109038076 -46592044 + ID4_ SINE ID 1 82 -1 9 1416 270 0 0 0 chr4 109038083 109038113 -46592007 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1416 1371 75 5 11 chr4 109038113 109038303 -46591817 + B2_Mm2 SINE B2 2 190 -5 9 1416 674 190 45 78 chr4 109038346 109038500 -46591620 + B1_Mur1 SINE Alu 1 149 0 9 1416 451 301 39 39 chr4 109038535 109038663 -46591457 - RSINE1 SINE B4 -2 163 36 9 1416 21 36 0 0 chr4 109038990 109039018 -46591102 + AT_rich Low_complexity Low_complexity 1 28 0 9 1416 216 250 326 23 chr4 109039419 109039505 -46590615 + PB1D7 SINE Alu 3 114 -6 9 1416 473 250 114 57 chr4 109039575 109039715 -46590405 + B1_Mur2 SINE Alu 2 149 0 9 1416 966 126 28 14 chr4 109039800 109039945 -46590175 + B1_Mur3 SINE Alu 2 148 -1 9 1416 355 304 124 52 chr4 109040032 109040050 -46590070 + ID_B1 SINE B4 59 222 -2 9 1416 501 226 58 45 chr4 109040050 109040185 -46589935 + B1F2 SINE Alu 3 148 -2 1 1416 760 208 12 69 chr4 109040185 109040345 -46589775 + B3A SINE B2 1 151 -47 1 1416 230 146 77 77 chr4 109040467 109040519 -46589601 + B3A SINE B2 80 131 -67 1 1416 815 56 32 0 chr4 109040524 109040650 -46589470 + (TC)n Simple_repeat Simple_repeat 2 131 0 1 1416 274 288 9 35 chr4 109040664 109040779 -46589341 - L1M4 LINE L1 -1225 4921 4810 1 1416 641 283 12 102 chr4 109040967 109041368 -46588752 - ORR1D1 LTR MaLR -7 367 3 1 1416 186 71 0 0 chr4 109041511 109041539 -46588581 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1416 485 44 0 14 chr4 109041724 109041793 -46588327 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1416 597 273 73 24 chr4 109041910 109042075 -46588045 + B3A SINE B2 2 174 -24 1 1416 1324 105 16 0 chr4 109042438 109042628 -46587492 - B2_Mm2 SINE B2 -2 193 1 1 1416 1232 97 43 0 chr4 109043586 109043771 -46586349 - B2_Mm2 SINE B2 -1 194 2 1 1416 180 361 40 20 chr4 109043910 109044009 -46586111 - MIRb SINE MIR -50 218 118 1 1416 455 318 61 0 chr4 109044019 109044136 -46585984 + ID_B1 SINE B4 83 207 -17 1 1416 641 270 25 70 chr4 109044136 109044335 -46585785 + B3A SINE B2 3 192 -6 1 1416 455 318 61 0 chr4 109044335 109044349 -46585771 + ID_B1 SINE B4 208 221 -3 1 1416 622 184 117 148 chr4 109044410 109044576 -46585544 + B3 SINE B2 1 163 -53 1 1416 411 38 0 0 chr4 109044576 109044629 -46585491 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1416 622 184 117 148 chr4 109044629 109044685 -46585435 + B3 SINE B2 164 216 0 1 1416 21 71 0 0 chr4 109044697 109044739 -46585381 + AT_rich Low_complexity Low_complexity 1 42 0 1 1416 246 81 0 0 chr4 109044881 109044918 -46585202 + (GGTTG)n Simple_repeat Simple_repeat 2 38 0 1 1416 180 0 0 0 chr4 109044918 109044938 -46585182 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1416 341 208 26 53 chr4 109045439 109045515 -46584605 + ID4_ SINE ID 9 82 -1 1 1416 483 266 24 24 chr4 109046177 109046304 -46583816 + B4A SINE B4 3 129 -163 1 1416 387 0 0 0 chr4 109047915 109047958 -46582162 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1416 779 229 78 0 chr4 109048454 109048620 -46581500 - B3A SINE B2 -16 182 4 1 1416 272 345 92 8 chr4 109048748 109048868 -46581252 - L2b LINE L2 -9 3366 3237 1 1416 715 200 130 10 chr4 109049809 109050001 -46580119 + B3 SINE B2 1 215 -1 1 1416 668 152 19 8 chr4 109050070 109050183 -46579937 - B1_Mur3 SINE Alu -48 101 2 1 1416 24 0 0 0 chr4 109050189 109050213 -46579907 + AT_rich Low_complexity Low_complexity 1 24 0 1 1416 384 277 24 0 chr4 109051446 109051529 -46578591 + MER20 DNA MER1_type 30 114 -105 1 1416 794 157 28 7 chr4 109051618 109051759 -46578361 + B1_Mur4 SINE Alu 2 145 -5 1 1417 1067 98 28 0 chr4 109051957 109052100 -46578020 + B1_Mus2 SINE Alu 1 147 0 1 1417 21 0 0 0 chr4 109052961 109052982 -46577138 + AT_rich Low_complexity Low_complexity 1 21 0 1 1417 802 146 13 77 chr4 109053042 109053198 -46576922 - B1_Mur1 SINE Alu -3 146 1 1 1417 233 203 33 33 chr4 109054059 109054120 -46576000 - ID4_ SINE ID -21 62 2 1 1417 230 309 107 158 chr4 109054126 109054303 -46575817 - ID_B1 SINE B4 -8 216 49 1 1417 867 158 7 7 chr4 109054607 109054747 -46575373 + B1_Mus2 SINE Alu 1 140 -7 1 1417 203 88 0 29 chr4 109054750 109054785 -46575335 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1417 198 0 0 0 chr4 109055717 109055739 -46574381 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1417 270 0 0 0 chr4 109056344 109056374 -46573746 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1417 21 0 0 0 chr4 109057181 109057202 -46572918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1417 362 340 19 0 chr4 109057331 109057434 -46572686 + PB1D10 SINE Alu 1 105 -12 1 1417 423 0 0 0 chr4 109057434 109057481 -46572639 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 1 1417 276 263 0 0 chr4 109057601 109057658 -46572462 - B1F1 SINE Alu -90 59 3 1 1417 22 0 0 0 chr4 109059828 109059850 -46570270 + AT_rich Low_complexity Low_complexity 1 22 0 1 1417 465 265 114 0 chr4 109060580 109060712 -46569408 + B1_Mur1 SINE Alu 1 147 -2 1 1417 248 279 138 11 chr4 109060814 109060901 -46569219 - PB1D10 SINE Alu -19 98 1 1 1417 1234 48 0 0 chr4 109060912 109061058 -46569062 - B1_Mus2 SINE Alu 0 147 2 1 1417 231 314 78 85 chr4 109061411 109061564 -46568556 - MIR SINE MIR 0 262 111 1 1417 699 169 25 0 chr4 109061690 109061808 -46568312 + B1_Mur1 SINE Alu 1 121 -28 1 1417 1182 82 0 0 chr4 109061828 109061975 -46568145 + B1_Mus1 SINE Alu 2 148 0 1 1417 665 232 68 36 chr4 109062015 109062207 -46567913 + B3A SINE B2 1 198 0 1 1417 285 330 34 11 chr4 109062316 109062405 -46567715 + PB1D7 SINE Alu 1 91 -29 1 1417 536 294 146 6 chr4 109062514 109062678 -46567442 + ID_B1 SINE B4 35 221 -3 1 1417 322 278 90 30 chr4 109063087 109063187 -46566933 - MamRep605 Unknown Unknown -77 799 694 1 1417 606 14 0 0 chr4 109063270 109063341 -46566779 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 1 1417 294 299 101 18 chr4 109063674 109063783 -46566337 + PB1 SINE Alu 1 118 -9 1 1417 270 208 21 0 chr4 109063947 109063995 -46566125 + RSINE1 SINE B4 2 50 -115 1 1417 213 226 0 0 chr4 109064008 109064061 -46566059 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1417 303 327 68 43 chr4 109064208 109064371 -46565749 - MIR SINE MIR -32 230 64 1 1417 654 210 188 28 chr4 109064590 109064771 -46565349 + B3 SINE B2 1 210 -6 1 1417 191 237 85 0 chr4 109064801 109064860 -46565260 + MIR SINE MIR 150 213 -49 1 1417 463 243 75 0 chr4 109065205 109065312 -46564808 + PB1D7 SINE Alu 1 115 -5 1 1417 405 58 0 0 chr4 109065319 109065371 -46564749 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1417 253 191 0 0 chr4 109065456 109065498 -46564622 + B2_Mm1t SINE B2 2 43 -150 1 1417 272 253 53 13 chr4 109065487 109065563 -46564557 + RSINE1 SINE B4 54 132 -33 1 1417 183 355 139 8 chr4 109066112 109066234 -46563886 + MIRb SINE MIR 111 248 -20 1 1417 202 171 49 0 chr4 109067183 109067224 -46562896 + G-rich Low_complexity Low_complexity 5 47 0 1 1417 520 269 72 10 chr4 109067438 109067633 -46562487 + L2 LINE L2 2429 2635 -784 1 1417 234 0 0 0 chr4 109067848 109067874 -46562246 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1417 727 189 0 8 chr4 109068070 109068198 -46561922 - B1_Mus2 SINE Alu -19 128 2 1 1417 468 0 0 0 chr4 109068199 109068251 -46561869 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1417 288 0 0 0 chr4 109068251 109068282 -46561838 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1417 712 226 14 7 chr4 109068315 109068462 -46561658 - RSINE1 SINE B4 -17 148 1 1 1417 210 353 49 25 chr4 109068536 109068658 -46561462 - L2a LINE L2 -26 3400 3276 1 1417 261 0 0 0 chr4 109070322 109070351 -46559769 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1417 261 0 0 0 chr4 109070440 109070469 -46559651 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1417 252 292 0 0 chr4 109070469 109070599 -46559521 + (TAGG)n Simple_repeat Simple_repeat 4 133 0 1 1417 672 158 0 0 chr4 109070592 109070744 -46559376 + (TTGG)n Simple_repeat Simple_repeat 2 153 0 1 1417 428 186 9 93 chr4 109070752 109070859 -46559261 - PB1D10 SINE Alu -1 116 19 1 1417 1565 151 188 6 chr4 109070902 109071242 -46558878 - Lx9 LINE L1 -380 7264 6863 1 1417 1133 178 205 59 chr4 109071235 109071576 -46558544 + Lx9 LINE L1 7253 7643 -1 1 1417 300 321 108 30 chr4 109071743 109071910 -46558210 - MLT1A0 LTR MaLR -46 319 140 1 1417 688 259 14 121 chr4 109071913 109072128 -46557992 - MTE2b LTR MaLR -6 373 182 1 1417 255 412 0 0 chr4 109072129 109072282 -46557838 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1417 778 222 50 0 chr4 109072299 109072461 -46557659 - B4 SINE B4 -14 278 109 1 1417 204 125 0 0 chr4 109072461 109072493 -46557627 + (TAG)n Simple_repeat Simple_repeat 1 32 0 1 1417 628 313 50 5 chr4 109072493 109072529 -46557591 - B4A SINE B4 -184 108 72 1 1417 296 295 92 37 chr4 109072512 109072621 -46557499 - RSINE1 SINE B4 -13 152 38 1 1417 900 229 23 37 chr4 109072650 109072868 -46557252 + B3 SINE B2 1 215 -1 1 1417 243 250 0 0 chr4 109072868 109072936 -46557184 + (ATG)n Simple_repeat Simple_repeat 1 68 0 1 1417 297 219 30 30 chr4 109072936 109073002 -46557118 - B4 SINE B4 -212 80 15 1 1417 1111 30 73 7 chr4 109073768 109073904 -46556216 + B1_Mus1 SINE Alu 2 146 -2 1 1417 279 0 0 0 chr4 109073905 109073936 -46556184 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1417 180 258 45 15 chr4 109073970 109074037 -46556083 - MIRc SINE MIR -131 137 69 1 1417 568 266 50 0 chr4 109074082 109074221 -46555899 + B1F2 SINE Alu 4 149 0 1 1417 414 188 68 34 chr4 109074279 109074367 -46555753 + RSINE1 SINE B4 42 132 -33 1 1417 975 149 30 0 chr4 109074825 109074993 -46555127 - RCHARR1 DNA MER1_type -55 919 747 1 1417 1057 218 15 0 chr4 109075014 109075220 -46554900 - B3 SINE B2 -7 209 1 1 1417 925 262 28 5 chr4 109075237 109075448 -46554672 - RCHARR1 DNA MER1_type -758 216 1 1 1417 231 98 268 0 chr4 109075452 109075493 -46554627 + RSINE1 SINE B4 80 131 -34 1 1417 294 29 0 0 chr4 109075503 109075538 -46554582 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1417 196 269 2 15 chr4 109075618 109075690 -46554430 + MIRc SINE MIR 113 183 -79 1 1417 191 129 0 31 chr4 109076755 109076787 -46553333 + MIRc SINE MIR 123 153 -115 1 1417 275 256 69 98 chr4 109076819 109076992 -46553128 - MIRb SINE MIR -25 243 76 1 1417 233 228 142 106 chr4 109077210 109077323 -46552797 - L2b LINE L2 -176 3199 3083 1 1417 227 224 79 146 chr4 109077332 109077421 -46552699 + Arthur1A DNA Tip100 21 103 -74 1 1417 216 0 0 0 chr4 109077483 109077507 -46552613 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1417 364 142 0 5 chr4 109077522 109077587 -46552533 - B2_Mm2 SINE B2 -107 109 47 2 1417 1257 102 22 6 chr4 109077638 109077816 -46552304 - B2_Mm2 SINE B2 -14 181 1 2 1417 289 284 103 21 chr4 109077832 109077929 -46552191 - B1F2 SINE Alu -28 121 17 2 1417 238 311 0 14 chr4 109078023 109078096 -46552024 - L2b LINE L2 -304 3083 3013 1 1417 817 152 230 6 chr4 109078489 109078654 -46551466 + B3 SINE B2 5 206 -10 2 1417 302 313 87 20 chr4 109079115 109079265 -46550855 + MIRb SINE MIR 28 187 -81 2 1417 29 28 0 0 chr4 109079684 109079720 -46550400 + GC_rich Low_complexity Low_complexity 1 36 0 2 1417 336 260 70 39 chr4 109080013 109080141 -46549979 - MIR SINE MIR -92 170 39 2 1417 191 314 11 75 chr4 109080660 109080753 -46549367 + MIR3 SINE MIR 81 167 -41 2 1417 628 241 0 8 chr4 109081281 109081415 -46548705 - ID_B1 SINE B4 -10 214 82 2 1417 1047 75 0 29 chr4 109081438 109081576 -46548544 + B1_Mus1 SINE Alu 2 135 -13 2 1417 207 0 0 0 chr4 109081576 109081599 -46548521 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1417 327 65 0 0 chr4 109081599 109081645 -46548475 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1417 667 202 62 0 chr4 109081713 109081842 -46548278 - B3A SINE B2 -61 137 1 2 1417 223 163 70 0 chr4 109082391 109082434 -46547686 + C-rich Low_complexity Low_complexity 6 51 0 2 1417 382 261 9 18 chr4 109082434 109082547 -46547573 - PB1D10 SINE Alu -5 112 1 2 1417 290 308 18 55 chr4 109082663 109082744 -46547376 - MIRb SINE MIR -94 174 99 2 1417 891 243 13 31 chr4 109082744 109082969 -46547151 + ID_B1 SINE B4 3 223 -1 2 1417 290 331 20 110 chr4 109082969 109083045 -46547075 - MIRb SINE MIR -167 101 34 2 1417 259 245 163 0 chr4 109084559 109084657 -46545463 + MIRc SINE MIR 40 153 -115 2 1417 283 314 84 8 chr4 109084848 109084967 -46545153 - L2 LINE L2 -506 2913 2786 2 1417 414 0 0 0 chr4 109085334 109085380 -46544740 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1417 993 57 0 0 chr4 109085672 109085795 -46544325 + B1_Mm SINE Alu 25 147 0 2 1417 26 0 0 0 chr4 109085795 109085821 -46544299 + AT_rich Low_complexity Low_complexity 1 26 0 2 1417 282 243 13 39 chr4 109086081 109086158 -46543962 + PB1D7 SINE Alu 11 85 -35 2 1417 432 0 0 0 chr4 109086188 109086236 -46543884 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2 1417 224 269 24 71 chr4 109086240 109086324 -46543796 - B3A SINE B2 -118 80 1 2 1417 1460 247 49 23 chr4 109086332 109086676 -46543444 - ORR1E LTR MaLR -6 353 1 2 1417 656 239 7 35 chr4 109086683 109086826 -46543294 + RSINE1 SINE B4 3 141 -24 2 1417 414 0 0 0 chr4 109086829 109086875 -46543245 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1417 236 304 77 42 chr4 109087205 109087373 -46542747 - L2 LINE L2 -808 2611 2438 2 1417 597 143 205 0 chr4 109087506 109087618 -46542502 + B1_Mur2 SINE Alu 14 148 -1 2 1417 1261 53 148 0 chr4 109087838 109088007 -46542113 - B2_Mm2 SINE B2 0 195 2 2 1417 205 286 205 8 chr4 109088007 109088134 -46541986 - L2a LINE L2 -91 3335 3184 2 1417 229 77 51 0 chr4 109089182 109089221 -46540899 - L1MB7 LINE L1 -19 6165 6125 2 1417 444 19 0 0 chr4 109089227 109089280 -46540840 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1417 654 216 30 0 chr4 109089451 109089585 -46540535 + B1F2 SINE Alu 5 142 -7 2 1417 481 298 0 0 chr4 109089615 109089729 -46540391 + ID_B1 SINE B4 111 224 0 2 1417 496 149 0 65 chr4 109089869 109089962 -46540158 - RMER5 LTR ERV1 -1 533 447 2 1417 1442 209 81 3 chr4 109089975 109090283 -46539837 - RMER5 LTR ERV1 -190 344 13 2 1417 472 102 620 0 chr4 109090692 109090800 -46539320 + MTC LTR MaLR 2 176 -243 2 1417 337 280 161 21 chr4 109091064 109091191 -46538929 + RLTR21 LTR ERVK 1077 1232 -340 2 1417 628 270 6 63 chr4 109091191 109091365 -46538755 - RSINE1 SINE B4 0 165 2 2 1417 337 280 161 21 chr4 109091365 109091423 -46538697 + RLTR21 LTR ERVK 1233 1287 -285 2 1417 188 184 0 20 chr4 109091513 109091563 -46538557 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1417 266 236 123 14 chr4 109092094 109092167 -46537953 - ID_B1 SINE B4 -62 162 82 2 1417 482 259 76 66 chr4 109092364 109092452 -46537668 + B4 SINE B4 14 220 -68 2 1417 722 148 18 19 chr4 109092452 109092580 -46537540 + B1_Mur1 SINE Alu 3 128 -21 2 1417 26 0 0 0 chr4 109092584 109092610 -46537510 + AT_rich Low_complexity Low_complexity 1 26 0 2 1417 186 43 0 0 chr4 109092610 109092633 -46537487 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 2 1417 197 349 92 15 chr4 109093553 109093684 -46536436 - MIR3 SINE MIR -51 157 17 2 1417 274 322 86 9 chr4 109094213 109094329 -46535791 + MIRb SINE MIR 63 187 -81 2 1417 283 300 43 0 chr4 109094700 109094770 -46535350 + ID4 SINE ID 1 73 -10 2 1417 180 152 0 0 chr4 109094899 109094932 -46535188 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1417 327 264 40 40 chr4 109095889 109095964 -46534156 - B4A SINE B4 0 292 218 2 1417 194 196 0 35 chr4 109095994 109096052 -46534068 + (CATG)n Simple_repeat Simple_repeat 1 56 0 2 1417 370 242 151 133 chr4 109096090 109096361 -46533759 - B4 SINE B4 -16 276 1 2 1417 191 225 208 14 chr4 109096427 109096499 -46533621 - MIR SINE MIR -78 130 45 2 1417 615 81 0 0 chr4 109096578 109096664 -46533456 + (TATG)n Simple_repeat Simple_repeat 4 89 0 2 1417 356 319 72 22 chr4 109096720 109096736 -46533384 - B4 SINE B4 -67 225 86 2 1417 566 252 4 2 chr4 109096736 109096853 -46533267 - B1_Mur2 SINE Alu -2 118 1 2 1417 1001 203 6 0 chr4 109096883 109097060 -46533060 - B3 SINE B2 -7 209 32 2 1417 383 171 26 0 chr4 109097070 109097146 -46532974 - Lx9 LINE L1 -193 7451 7374 2 1417 4232 204 48 6 chr4 109097166 109098076 -46532044 - Lx9 LINE L1 -7 7637 6689 2 1417 364 384 40 31 chr4 109098365 109098588 -46531532 - L1ME3B LINE L1 -393 5847 5623 2 1417 192 77 0 0 chr4 109098719 109098745 -46531375 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 2 1417 938 158 67 0 chr4 109099302 109099319 -46530801 - B2_Mm1t SINE B2 -2 191 175 2 1417 294 29 0 0 chr4 109099319 109099354 -46530766 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1417 1146 76 1 0 chr4 109099354 109099501 -46530619 - B2_Mm2 SINE B2 -19 174 16 2 1417 235 250 14 72 chr4 109099443 109099512 -46530608 - ID4 SINE ID -11 72 8 2 1417 335 248 7 0 chr4 109099598 109099735 -46530385 + (CA)n Simple_repeat Simple_repeat 1 138 0 2 1417 477 226 49 70 chr4 109100378 109100521 -46529599 + MER20 DNA MER1_type 67 206 -13 2 1417 227 250 156 62 chr4 109101023 109101151 -46528969 + MER63B DNA AcHobo 287 426 -10 2 1417 221 255 105 56 chr4 109101585 109101754 -46528366 + MIRc SINE MIR 11 194 -74 2 1417 614 186 19 76 chr4 109102597 109102754 -46527366 + B1_Mur2 SINE Alu 1 148 -1 2 1417 1154 130 53 11 chr4 109102785 109102972 -46527148 + B2_Mm2 SINE B2 1 195 0 2 1417 1365 142 27 18 chr4 109104496 109104719 -46525401 + URR1B DNA MER1_type 1 225 0 2 1417 807 249 238 8 chr4 109104921 109105156 -46524964 + B4 SINE B4 1 289 -3 2 1417 237 188 43 72 chr4 109105932 109106001 -46524119 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 2 1417 239 358 0 12 chr4 109106046 109106128 -46523992 + MER3 DNA MER1_type 2 82 -127 2 1417 237 172 3 0 chr4 109106985 109107025 -46523095 - B1_Mus2 SINE Alu -107 41 1 2 1417 781 301 28 95 chr4 109107234 109107517 -46522603 - B4A SINE B4 -21 271 8 2 1417 2180 158 60 30 chr4 109107546 109107943 -46522177 + MTC LTR MaLR 13 421 0 2 1417 540 0 0 0 chr4 109108239 109108299 -46521821 + (TCCA)n Simple_repeat Simple_repeat 2 61 0 2 1417 2122 150 79 13 chr4 109108327 109108719 -46521401 + MTC LTR MaLR 4 421 0 2 1417 2928 152 105 26 chr4 109108719 109109300 -46520820 + MTC-int LTR MaLR 3 629 -629 2 1417 590 265 185 20 chr4 109109305 109109559 -46520561 - L1M1 LINE L1 -643 5657 5362 2 1417 337 268 20 30 chr4 109109646 109109746 -46520374 - RSINE1 SINE B4 -65 100 2 2 1417 611 260 0 0 chr4 109109756 109109879 -46520241 - ID_B1 SINE B4 0 224 102 2 1417 1121 84 14 0 chr4 109110044 109110186 -46519934 + B1_Mus1 SINE Alu 1 144 -4 2 1417 183 114 0 0 chr4 109110188 109110223 -46519897 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1417 766 261 38 46 chr4 109111735 109111972 -46518148 - ORR1D2 LTR MaLR -133 237 3 2 1417 216 0 0 0 chr4 109113625 109113649 -46516471 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1417 480 250 120 8 chr4 109113872 109113997 -46516123 + ID_B1 SINE B4 81 219 -5 2 1417 191 125 0 172 chr4 109114750 109114808 -46515312 - MIR SINE MIR -67 141 94 2 1417 193 323 144 48 chr4 109114954 109115224 -46514896 + L2b LINE L2 3015 3310 -65 2 1417 186 268 36 0 chr4 109115478 109115534 -46514586 - L2c LINE L2 -6 3381 3324 2 1417 369 221 26 3 chr4 109115569 109115666 -46514454 + B1_Mus1 SINE Alu 13 116 -1 2 1417 240 203 0 33 chr4 109117265 109117326 -46512794 + B1_Mur2 SINE Alu 90 148 -1 2 1417 273 262 116 54 chr4 109118844 109118898 -46511222 + ID_B1 SINE B4 82 143 -81 2 1417 660 102 244 8 chr4 109118898 109119017 -46511103 + B1_Mus1 SINE Alu 2 148 0 2 1417 273 262 116 54 chr4 109119017 109119091 -46511029 + ID_B1 SINE B4 144 218 -6 2 1417 387 200 23 12 chr4 109119555 109119641 -46510479 + B4A SINE B4 1 87 -205 2 1417 348 224 55 27 chr4 109119785 109119895 -46510225 - B1_Mur1 SINE Alu -34 115 3 2 1417 333 297 124 17 chr4 109119895 109119963 -46510157 - B4A SINE B4 -87 205 9 2 1417 211 133 0 0 chr4 109119973 109120003 -46510117 + B1F SINE Alu 9 38 -111 2 1417 248 153 62 92 chr4 109120040 109120105 -46510015 - PB1D9 SINE Alu -1 119 57 2 1417 341 278 181 9 chr4 109120311 109120427 -46509693 + RSINE1 SINE B4 2 137 -28 2 1417 1111 96 0 12 chr4 109120468 109120637 -46509483 + B2_Mm2 SINE B2 2 168 -27 3 1417 369 0 0 0 chr4 109120639 109120680 -46509440 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1417 184 284 328 0 chr4 109120982 109121116 -46509004 + MER5A DNA MER1_type 12 189 0 3 1417 223 273 39 0 chr4 109121192 109121269 -46508851 - PB1D9 SINE Alu -8 112 33 3 1417 250 339 78 0 chr4 109121584 109121699 -46508421 - L2 LINE L2 -534 2885 2762 3 1417 228 264 19 0 chr4 109121898 109121951 -46508169 + RSINE1 SINE B4 108 161 -4 2 1417 237 191 0 0 chr4 109122918 109122960 -46507160 - ID_B1 SINE B4 -88 136 95 3 1417 592 67 100 0 chr4 109123286 109123376 -46506744 + B1_Mus2 SINE Alu 49 147 0 3 1417 282 221 14 29 chr4 109123539 109123609 -46506511 - ID4 SINE ID -11 72 4 3 1417 1039 183 54 10 chr4 109123726 109123930 -46506190 + B3 SINE B2 1 213 -3 3 1417 1827 126 9 86 chr4 109124070 109124418 -46505702 - ORR1A4 LTR MaLR -8 321 1 3 1417 542 227 49 21 chr4 109127422 109127566 -46502554 + B1F2 SINE Alu 2 149 0 3 1417 270 253 67 33 chr4 109127944 109128034 -46502086 + ORR1E LTR MaLR 19 111 -248 3 1417 886 225 37 61 chr4 109128059 109128305 -46501815 + MTD LTR MaLR 52 291 -128 3 1417 391 268 80 0 chr4 109128467 109128579 -46501541 + MTD LTR MaLR 251 371 -8 3 1417 835 171 57 0 chr4 109128620 109128760 -46501360 - B1_Mur3 SINE Alu -1 148 1 3 1417 1624 41 0 5 chr4 109128770 109128964 -46501156 - B2_Mm1t SINE B2 0 193 1 3 1417 545 173 0 68 chr4 109129975 109130093 -46500027 + PB1D9 SINE Alu 1 110 -10 3 1417 827 43 200 0 chr4 109130309 109130424 -46499696 - B1_Mus1 SINE Alu -9 139 2 3 1417 265 286 9 54 chr4 109130444 109130555 -46499565 + PB1D7 SINE Alu 9 114 -6 3 1417 507 273 27 27 chr4 109131696 109131843 -46498277 + B1F2 SINE Alu 2 148 -1 3 1417 330 226 82 71 chr4 109132040 109132168 -46497952 - RSINE1 SINE B4 -35 130 1 3 1417 198 0 0 0 chr4 109132178 109132200 -46497920 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1417 394 135 315 0 chr4 109132793 109132882 -46497238 + B1_Mus1 SINE Alu 22 138 -10 3 1417 460 242 39 24 chr4 109132942 109133069 -46497051 + ID_B1 SINE B4 88 216 -8 3 1417 328 302 81 86 chr4 109133654 109133828 -46496292 - ID_B1 SINE B4 -49 175 3 3 1417 740 185 46 0 chr4 109134056 109134186 -46495934 + B1_Mur2 SINE Alu 1 136 -13 3 1417 366 331 7 33 chr4 109134199 109134349 -46495771 + RSINE1 SINE B4 1 146 -19 3 1417 563 260 137 118 chr4 109134527 109134595 -46495525 - L1MB8 LINE L1 -218 5960 5894 3 1417 567 227 45 0 chr4 109134595 109134727 -46495393 + B1F SINE Alu 2 139 -10 3 1417 563 260 137 118 chr4 109134727 109135073 -46495047 - L1MB8 LINE L1 -285 5893 5538 3 1417 252 204 108 54 chr4 109135069 109135162 -46494958 - L1MD LINE L1 -837 5522 5425 3 1417 457 239 139 50 chr4 109135207 109135317 -46494803 - L1MB8 LINE L1 -864 5282 5175 3 1417 284 280 0 47 chr4 109135317 109135403 -46494717 - ID4 SINE ID 0 83 2 3 1417 457 239 139 50 chr4 109135403 109135530 -46494590 - L1MB8 LINE L1 -972 5174 5024 3 1417 463 180 53 26 chr4 109135635 109135749 -46494371 - PB1D9 SINE Alu -2 118 2 3 1417 732 217 103 17 chr4 109135809 109136043 -46494077 + Lx9 LINE L1 7262 7515 -129 3 1417 274 152 39 107 chr4 109136077 109136180 -46493940 + Lx9 LINE L1 7419 7514 -130 3 1417 309 169 0 0 chr4 109136193 109136252 -46493868 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1417 29 0 0 0 chr4 109136295 109136324 -46493796 + AT_rich Low_complexity Low_complexity 1 29 0 3 1417 28 61 0 0 chr4 109136510 109136559 -46493561 + AT_rich Low_complexity Low_complexity 1 49 0 3 1417 279 252 186 16 chr4 109136967 109137096 -46493024 + L1M4 LINE L1 5029 5179 -967 3 1417 281 340 82 9 chr4 109137335 109137445 -46492675 - ID_B1 SINE B4 -24 200 83 3 1417 21 0 0 0 chr4 109137561 109137582 -46492538 + AT_rich Low_complexity Low_complexity 1 21 0 3 1417 460 131 355 0 chr4 109137592 109137699 -46492421 + B1_Mur3 SINE Alu 5 149 0 3 1417 219 233 9 64 chr4 109137756 109137789 -46492331 + A-rich Low_complexity Low_complexity 3 34 0 3 1417 336 176 211 42 chr4 109137789 109137884 -46492236 + PB1D10 SINE Alu 1 111 -6 3 1417 219 233 9 64 chr4 109137884 109137960 -46492160 + A-rich Low_complexity Low_complexity 35 106 0 3 1417 440 227 109 0 chr4 109137977 109138087 -46492033 - B3 SINE B2 -93 123 2 3 1417 439 234 271 28 chr4 109138108 109138360 -46491760 + L1MCa LINE L1 4 316 -6192 3 1417 715 136 29 57 chr4 109138360 109138500 -46491620 + B1_Mus1 SINE Alu 1 136 -12 3 1417 180 0 0 0 chr4 109138501 109138521 -46491599 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1417 2476 147 87 18 chr4 109138975 109139468 -46490652 + RLTR11A2 LTR ERVK 1 527 0 3 1417 608 240 0 8 chr4 109139530 109139656 -46490464 - B3A SINE B2 -71 127 3 3 1417 389 218 241 18 chr4 109139668 109139780 -46490340 - B1_Mur2 SINE Alu -8 141 5 3 1417 232 282 28 0 chr4 109140151 109140222 -46489898 + PB1D7 SINE Alu 43 115 -5 3 1417 23 0 0 0 chr4 109140303 109140326 -46489794 + AT_rich Low_complexity Low_complexity 1 23 0 3 1417 515 196 88 0 chr4 109140327 109140429 -46489691 - PB1D9 SINE Alu -8 112 2 3 1417 287 322 88 11 chr4 109140435 109140526 -46489594 + RSINE1 SINE B4 51 148 -17 3 1417 263 275 29 14 chr4 109140625 109140695 -46489425 + ID4_ SINE ID 13 83 0 3 1417 232 125 0 0 chr4 109140897 109140937 -46489183 - ID_B1 SINE B4 -4 220 181 3 1417 218 169 292 0 chr4 109140898 109140963 -46489157 - B1F SINE Alu -5 144 61 3 1417 770 185 173 0 chr4 109141308 109141481 -46488639 + B3 SINE B2 9 211 -5 3 1417 414 278 87 22 chr4 109141948 109142132 -46487988 + B3A SINE B2 3 198 0 3 1417 286 200 77 0 chr4 109142344 109142409 -46487711 - RMER30 DNA MER1_type 0 202 133 3 1417 371 213 171 27 chr4 109142615 109142726 -46487394 + B1_Mur1 SINE Alu 12 138 -11 3 1417 212 0 0 35 chr4 109142729 109142758 -46487362 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1417 357 283 24 103 chr4 109142767 109142780 -46487340 + PB1D7 SINE Alu 2 68 -52 3 1417 415 264 160 0 chr4 109142780 109142886 -46487234 + ID_B1 SINE B4 92 214 -10 3 1417 409 210 104 30 chr4 109142912 109143025 -46487095 + B1_Mus1 SINE Alu 3 123 -26 3 1417 281 282 112 75 chr4 109143338 109143472 -46486648 + RSINE1 SINE B4 2 140 -25 3 1417 318 208 129 29 chr4 109143516 109143612 -46486508 + B1_Mur2 SINE Alu 1 102 -47 3 1417 459 0 0 0 chr4 109143638 109143689 -46486431 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1417 386 239 45 18 chr4 109144336 109144447 -46485673 - B3 SINE B2 -100 116 3 3 1417 674 256 62 34 chr4 109144508 109144686 -46485434 - B3A SINE B2 -14 184 2 3 1417 296 174 0 0 chr4 109144841 109144887 -46485233 + B4 SINE B4 102 147 -145 3 1417 33 66 0 0 chr4 109144887 109144948 -46485172 + AT_rich Low_complexity Low_complexity 1 61 0 3 1417 368 268 44 9 chr4 109144981 109145094 -46485026 - PB1D10 SINE Alu 0 117 1 3 1417 311 266 0 0 chr4 109145101 109145165 -46484955 + ID_B1 SINE B4 140 203 -21 3 1417 237 179 53 18 chr4 109145560 109145617 -46484503 + ID_B1 SINE B4 80 138 -86 3 1417 337 120 286 12 chr4 109145566 109145650 -46484470 + PB1D7 SINE Alu 7 113 -7 3 1417 233 299 64 13 chr4 109145754 109145832 -46484288 - ID SINE ID -140 84 3 3 1417 520 207 19 70 chr4 109146060 109146216 -46483904 - B1_Mur1 SINE Alu 0 149 2 3 1417 702 147 101 0 chr4 109146221 109146350 -46483770 - B1_Mus2 SINE Alu 0 150 9 3 1417 410 264 28 85 chr4 109146528 109146544 -46483576 - ID_B1 SINE B4 -4 220 88 3 1417 571 232 32 0 chr4 109146544 109146669 -46483451 - B1F SINE Alu -14 135 7 3 1417 198 0 0 0 chr4 109147148 109147170 -46482950 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1417 194 224 69 0 chr4 109147392 109147450 -46482670 - L2c LINE L2 0 3387 3326 3 1417 183 322 32 11 chr4 109147646 109147740 -46482380 - L2b LINE L2 -244 3131 3036 3 1417 21 36 0 0 chr4 109148961 109148989 -46481131 + GC_rich Low_complexity Low_complexity 1 28 0 3 1417 28 0 0 0 chr4 109149109 109149137 -46480983 + GC_rich Low_complexity Low_complexity 1 28 0 3 1417 24 0 0 0 chr4 109149330 109149354 -46480766 + GC_rich Low_complexity Low_complexity 1 24 0 3 1417 1201 48 7 0 chr4 109149881 109150027 -46480093 + B1_Mus1 SINE Alu 2 148 0 3 1417 708 195 7 10 chr4 109150824 109150976 -46479144 + B1_Mur3 SINE Alu 1 149 0 3 1417 458 33 17 0 chr4 109150978 109151038 -46479082 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1417 303 294 18 89 chr4 109151041 109151153 -46478967 + PB1D10 SINE Alu 9 112 -5 3 1417 807 187 29 0 chr4 109151178 109151317 -46478803 - B1_Mur2 SINE Alu -2 147 5 3 1417 542 301 0 8 chr4 109151352 109151486 -46478634 + ID_B1 SINE B4 82 214 -10 3 1417 266 277 47 35 chr4 109151525 109151611 -46478509 - PB1D7 SINE Alu -32 88 2 3 1417 881 127 0 27 chr4 109151634 109151780 -46478340 - B1_Mur4 SINE Alu 0 150 9 3 1417 259 237 184 0 chr4 109152067 109152143 -46477977 + PB1D10 SINE Alu 1 90 -27 3 1417 320 336 42 45 chr4 109152175 109152485 -46477635 + B4 SINE B4 1 281 -11 3 1417 396 0 0 0 chr4 109152490 109152534 -46477586 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1417 223 277 120 60 chr4 109152622 109152722 -46477398 + PB1D9 SINE Alu 7 112 -8 3 1417 791 208 45 69 chr4 109152772 109152974 -46477146 + B3A SINE B2 1 197 -1 3 1417 694 163 59 0 chr4 109153266 109153401 -46476719 + B1_Mus1 SINE Alu 6 148 0 4 1417 229 317 0 0 chr4 109153409 109153469 -46476651 + GA-rich Low_complexity Low_complexity 3 62 0 4 1417 325 278 30 30 chr4 109153883 109153983 -46476137 + RSINE1 SINE B4 29 128 -37 4 1417 312 91 0 0 chr4 109153995 109154039 -46476081 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1417 301 320 0 0 chr4 109154575 109154653 -46475467 - ID4_ SINE ID 0 83 6 4 1417 769 186 35 21 chr4 109154690 109154833 -46475287 - B1_Mus2 SINE Alu -1 146 2 4 1417 766 138 64 14 chr4 109154868 109155008 -46475112 + B1_Mur4 SINE Alu 3 149 -1 4 1417 358 275 0 0 chr4 109155720 109155800 -46474320 + ID4 SINE ID 4 83 0 4 1417 210 333 0 0 chr4 109155861 109155933 -46474187 + PB1 SINE Alu 20 91 -36 4 1417 381 194 0 14 chr4 109155970 109156043 -46474077 + ID_B1 SINE B4 150 221 -3 4 1417 457 250 74 52 chr4 109156060 109156195 -46473925 + B1F SINE Alu 10 147 -2 4 1417 258 258 68 30 chr4 109156625 109156757 -46473363 + ID_B1 SINE B4 86 222 -2 4 1417 188 34 0 33 chr4 109156842 109156872 -46473248 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 4 1417 259 269 73 31 chr4 109156896 109156992 -46473128 + ID_B1 SINE B4 118 217 -7 4 1417 251 163 97 11 chr4 109157033 109157126 -46472994 - RLTR1B-int LTR ERV1 -2060 1239 1139 4 1417 315 0 0 0 chr4 109157129 109157164 -46472956 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1417 2623 156 93 17 chr4 109157852 109158369 -46471751 - Lx9 LINE L1 -55 7589 7034 4 1417 440 18 18 0 chr4 109159325 109159382 -46470738 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1417 977 138 0 0 chr4 109159670 109159815 -46470305 - B1_Mus1 SINE Alu -1 147 3 4 1417 431 278 109 20 chr4 109159836 109159983 -46470137 + RSINE1 SINE B4 3 162 -3 4 1417 651 160 8 8 chr4 109160024 109160144 -46469976 + B1_Mur2 SINE Alu 24 143 -6 4 1417 4228 182 104 26 chr4 109160248 109161163 -46468957 + RMER1B Other Other 78 1063 -3 4 1417 830 80 138 0 chr4 109161173 109161311 -46468809 + B2_Mm2 SINE B2 2 158 -37 4 1417 315 0 0 0 chr4 109161312 109161347 -46468773 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 1417 720 111 0 0 chr4 109161365 109161473 -46468647 + (GAA)n Simple_repeat Simple_repeat 3 110 0 4 1417 679 162 28 56 chr4 109161473 109161617 -46468503 + B1_Mus2 SINE Alu 1 140 -7 4 1417 204 200 0 0 chr4 109161619 109161654 -46468466 + polypurine Low_complexity Low_complexity 4 38 0 4 1417 490 261 185 22 chr4 109161663 109161847 -46468273 + B3 SINE B2 1 214 -2 4 1417 253 118 98 0 chr4 109161885 109161936 -46468184 + Lx9 LINE L1 7587 7642 -2 4 1417 1228 54 0 0 chr4 109161966 109162113 -46468007 + B1_Mus2 SINE Alu 1 147 0 4 1417 1117 139 5 25 chr4 109162180 109162379 -46467741 - B2_Mm2 SINE B2 0 195 1 4 1417 571 210 34 0 chr4 109162530 109162649 -46467471 + B1_Mur1 SINE Alu 1 123 -26 4 1417 313 58 39 0 chr4 109162778 109162830 -46467290 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1417 854 85 0 51 chr4 109162846 109162983 -46467137 - B1_Mus1 SINE Alu 0 148 19 4 1417 397 252 19 97 chr4 109162848 109163002 -46467118 - B4 SINE B4 -69 223 82 4 1417 526 177 154 0 chr4 109163148 109163278 -46466842 + B1_Mur4 SINE Alu 1 150 0 4 1417 243 125 0 0 chr4 109163279 109163319 -46466801 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1417 700 71 0 20 chr4 109163350 109163451 -46466669 - B1_Mus2 SINE Alu 0 147 49 4 1417 452 79 0 0 chr4 109163696 109163759 -46466361 - B2_Mm1t SINE B2 -130 63 1 4 1417 283 18 0 52 chr4 109163759 109163817 -46466303 + B2_Mm1t SINE B2 139 193 0 4 1417 294 261 44 18 chr4 109164022 109164135 -46465985 - BC1_Mm scRNA scRNA -36 116 1 4 1417 32 26 0 0 chr4 109164135 109164174 -46465946 + AT_rich Low_complexity Low_complexity 1 39 0 4 1417 717 45 0 0 chr4 109164180 109164269 -46465851 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1417 396 198 167 0 chr4 109164269 109164365 -46465755 - RSINE1 SINE B4 -44 121 10 4 1417 323 284 19 56 chr4 109164379 109164487 -46465633 - PB1D7 SINE Alu -7 113 10 4 1417 233 188 11 140 chr4 109164428 109164521 -46465599 + YREP_Mm Unknown Unknown 253 333 -1479 4 1417 225 0 0 0 chr4 109164540 109164565 -46465555 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1417 1132 71 0 0 chr4 109164567 109164707 -46465413 - B1_Mus2 SINE Alu -6 141 2 4 1417 466 224 134 93 chr4 109164717 109164829 -46465291 - B3A SINE B2 -5 193 96 4 1417 2964 131 72 0 chr4 109164829 109165316 -46464804 - RLTR28 LTR ERVL -2 522 1 4 1417 466 224 134 93 chr4 109165316 109165375 -46464745 - B3A SINE B2 -103 95 15 4 1417 235 322 44 0 chr4 109165420 109165510 -46464610 + MLT1H-int LTR MaLR 1112 1205 -204 4 1417 215 61 30 0 chr4 109165668 109165701 -46464419 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 4 1417 629 204 23 132 chr4 109165826 109166046 -46464074 + RMER5 LTR ERV1 329 524 -10 4 1417 306 296 136 18 chr4 109166175 109166285 -46463835 - B1F SINE Alu -9 140 18 4 1417 256 276 114 61 chr4 109166285 109166306 -46463814 - ID_B1 SINE B4 -9 215 78 4 1417 1490 218 99 48 chr4 109166351 109166746 -46463374 - MTD LTR MaLR 0 419 5 4 1417 1039 211 57 24 chr4 109166914 109167123 -46462997 - B3 SINE B2 0 216 1 4 1417 568 244 0 16 chr4 109167171 109167292 -46462828 + PB1 SINE Alu 4 122 -5 4 1417 2258 128 160 165 chr4 109167553 109168122 -46461998 - RLTR12A LTR ERVK -2 566 1 4 1417 1128 142 27 86 chr4 109168224 109168501 -46461619 - MTB_Mm LTR MaLR -7 414 33 4 1417 398 258 186 0 chr4 109168915 109169039 -46461081 + B1F SINE Alu 1 147 -2 4 1417 1224 182 50 0 chr4 109169069 109169267 -46460853 + B3 SINE B2 3 210 -6 4 1417 2710 116 52 15 chr4 109169302 109169706 -46460414 + MTC LTR MaLR 3 421 0 4 1417 628 276 51 17 chr4 109169752 109169929 -46460191 + B3A SINE B2 1 183 -15 4 1417 231 216 0 105 chr4 109169966 109170023 -46460097 + B1F SINE Alu 5 55 -94 4 1417 194 91 30 0 chr4 109170025 109170058 -46460062 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1417 758 161 48 1 chr4 109170068 109170195 -46459925 - B1_Mur3 SINE Alu 0 149 19 4 1417 384 22 0 0 chr4 109170195 109170240 -46459880 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1417 730 191 29 29 chr4 109170240 109170252 -46459868 - B1_Mus1 SINE Alu -128 20 9 4 1417 257 258 65 139 chr4 109170362 109170470 -46459650 + PB1D10 SINE Alu 20 119 -1 4 1417 332 211 66 0 chr4 109170490 109170566 -46459554 + ID4_ SINE ID 2 82 -1 4 1417 1222 155 86 14 chr4 109171439 109171648 -46458472 - URR1B DNA MER1_type 0 225 2 4 1417 442 176 12 12 chr4 109171830 109171916 -46458204 + B1_Mus2 SINE Alu 59 144 -3 4 1417 557 252 17 1 chr4 109171924 109172064 -46458056 + B1_Mus2 SINE Alu 1 142 -6 4 1417 397 274 61 9 chr4 109172254 109172368 -46457752 + RSINE1 SINE B4 3 122 -43 4 1417 1165 196 15 5 chr4 109172420 109172625 -46457495 + B3 SINE B2 7 213 -3 4 1417 612 261 121 53 chr4 109172682 109173005 -46457115 - RLTR15 LTR ERVK -14 345 1 4 1417 374 257 304 14 chr4 109173005 109173092 -46457028 - ID_B1 SINE B4 -39 185 59 4 1417 333 0 0 0 chr4 109173092 109173129 -46456991 + (CACTA)n Simple_repeat Simple_repeat 2 38 0 4 1417 374 257 304 14 chr4 109173129 109173179 -46456941 - ID SINE ID -166 58 8 4 1417 537 268 94 0 chr4 109173254 109173381 -46456739 + ID_B1 SINE B4 82 220 -4 4 1417 840 201 35 7 chr4 109173454 109173599 -46456521 - B1_Mur3 SINE Alu 0 149 1 4 1417 231 114 0 0 chr4 109173629 109173664 -46456456 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 1417 378 91 0 0 chr4 109173664 109173719 -46456401 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1417 722 234 69 0 chr4 109173721 109173866 -46456254 - B3A SINE B2 -42 156 2 4 1417 305 307 104 10 chr4 109173961 109174162 -46455958 + MLT1K LTR MaLR 370 589 -6 4 1417 279 79 0 0 chr4 109174217 109174255 -46455865 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 4 1417 313 295 0 25 chr4 109174275 109174355 -46455765 - ID4_ SINE ID -2 81 4 4 1417 575 292 29 0 chr4 109174408 109174545 -46455575 - RSINE1 SINE B4 -22 143 3 4 1417 467 198 79 26 chr4 109174579 109174693 -46455427 - PB1D7 SINE Alu 0 120 1 4 1417 717 224 53 6 chr4 109174699 109174870 -46455250 - B3A SINE B2 -19 179 1 4 1417 934 184 0 13 chr4 109174890 109175039 -46455081 - B1_Mur1 SINE Alu 0 149 3 4 1417 535 270 71 13 chr4 109175137 109175291 -46454829 - RSINE1 SINE B4 -2 163 1 4 1417 238 312 37 12 chr4 109175514 109175595 -46454525 - ID4 SINE ID 0 83 1 4 1417 207 0 0 0 chr4 109176357 109176380 -46453740 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1417 409 237 38 115 chr4 109176877 109176902 -46453218 - ID_B1 SINE B4 -1 223 199 4 1417 324 278 0 53 chr4 109176902 109176978 -46453142 - ID4_ SINE ID -10 73 2 4 1417 409 245 34 107 chr4 109176978 109177126 -46452994 - ID_B1 SINE B4 -26 198 66 4 1417 579 163 29 42 chr4 109177284 109177420 -46452700 + B1_Mur1 SINE Alu 1 148 -1 4 1417 553 217 76 25 chr4 109177461 109177579 -46452541 - B1F1 SINE Alu -25 124 1 4 1417 237 180 0 0 chr4 109177810 109177860 -46452260 + B3 SINE B2 167 216 0 4 1417 274 179 5 22 chr4 109178467 109178549 -46451571 - B1_Mus1 SINE Alu -42 78 1 4 1417 246 239 29 29 chr4 109178484 109178553 -46451567 - B4A SINE B4 -142 150 82 4 1417 667 207 64 7 chr4 109178553 109178694 -46451426 - B1_Mur3 SINE Alu 0 149 1 5 1417 20531 124 184 11 chr4 109178895 109181421 -46448699 + L1_Mus3 LINE L1 433 3281 -2602 5 1417 408 20 0 0 chr4 109181421 109181470 -46448650 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 5 177 20531 112 180 2 chr4 109181470 109184155 -46445965 + L1_Mus3 LINE L1 3282 6632 -6 5 1418 2488 204 97 3 chr4 109184174 109184751 -46445369 + Lx9 LINE L1 7006 7636 -8 5 1418 594 340 0 41 chr4 109184759 109184955 -46445165 + B3A SINE B2 1 188 -10 5 1418 528 243 75 68 chr4 109184965 109185111 -46445009 - B1_Mur1 SINE Alu -2 147 1 5 1418 35 63 0 0 chr4 109185111 109185174 -46444946 + AT_rich Low_complexity Low_complexity 1 63 0 5 1418 823 218 7 7 chr4 109185303 109185451 -46444669 - B1_Mur4 SINE Alu -1 149 2 5 1418 1079 137 0 0 chr4 109185537 109185683 -46444437 + B1_Mus1 SINE Alu 2 147 -1 5 1418 414 0 0 0 chr4 109185683 109185729 -46444391 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 5 1418 2207 177 76 11 chr4 109185749 109186211 -46443909 + Lx9 LINE L1 7013 7504 -140 5 1418 733 206 49 7 chr4 109186213 109186355 -46443765 - B1_Mur2 SINE Alu -1 148 1 5 1418 828 189 58 84 chr4 109186361 109186552 -46443568 - B3 SINE B2 -9 186 1 5 1418 181 337 57 38 chr4 109186587 109186692 -46443428 - MIR SINE MIR -51 211 105 5 1418 303 269 145 40 chr4 109186766 109186890 -46443230 + ID_B1 SINE B4 88 224 0 5 1418 28406 120 14 10 chr4 109187990 109189831 -46440289 + L1_Mus3 LINE L1 1462 3306 -2577 5 1418 210 37 0 0 chr4 109189831 109189858 -46440262 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 1418 28406 120 14 10 chr4 109189858 109192218 -46437902 + L1_Mus3 LINE L1 3307 5680 -203 5 1418 2275 91 10 3 chr4 109192218 109192517 -46437603 - L1_Mus3 LINE L1 -5 6633 6333 5 1418 28406 92 7 2 chr4 109192517 109193465 -46436655 + L1_Mus3 LINE L1 5681 6632 -6 5 1418 207 0 0 0 chr4 109193474 109193497 -46436623 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1418 610 283 0 50 chr4 109193779 109193939 -46436181 - RSINE1 SINE B4 -9 156 5 5 1418 203 312 0 0 chr4 109194060 109194124 -46435996 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1418 604 201 62 0 chr4 109194195 109194339 -46435781 - Tigger1 DNA MER2_type -441 1977 1825 5 1418 594 0 0 0 chr4 109195141 109195207 -46434913 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1418 221 226 105 17 chr4 109195217 109195345 -46434775 - B3 SINE B2 -1 197 2 5 1418 432 0 0 0 chr4 109195851 109195899 -46434221 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1418 387 211 211 0 chr4 109195916 109196030 -46434090 + L1MC LINE L1 5635 5772 -572 5 1418 656 326 149 42 chr4 109197182 109198043 -46432077 + L2a LINE L2 1867 2819 -600 5 1418 453 235 172 9 chr4 109198105 109198221 -46431899 + B1F2 SINE Alu 2 136 -13 5 1418 243 0 0 0 chr4 109198221 109198248 -46431872 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1418 500 68 14 0 chr4 109198322 109198395 -46431725 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1418 341 239 0 64 chr4 109198395 109198414 -46431706 - PB1D10 SINE Alu -1 116 29 5 1418 366 240 0 0 chr4 109198414 109198489 -46431631 - ID_B1 SINE B4 -40 184 110 5 1418 421 280 65 0 chr4 109198511 109198618 -46431502 - PB1D10 SINE Alu -3 114 1 5 1418 253 264 122 33 chr4 109198636 109198726 -46431394 + MIR SINE MIR 149 246 -16 5 1418 400 214 31 82 chr4 109198982 109199079 -46431041 - RSINE1 SINE B4 0 165 74 5 1418 222 264 178 33 chr4 109199217 109199307 -46430813 + L2a LINE L2 3276 3378 -48 5 1418 3758 123 9 9 chr4 109199567 109200107 -46430013 + Lx2B LINE L1 6461 7000 0 5 1418 927 157 6 32 chr4 109200369 109200527 -46429593 + URR1A DNA MER1_type 1 154 -72 5 1418 342 0 0 0 chr4 109201130 109201168 -46428952 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1418 392 297 22 0 chr4 109201178 109201316 -46428804 + L1MA4 LINE L1 5789 5929 -371 5 1418 1237 197 39 0 chr4 109201468 109201676 -46428444 - B3 SINE B2 0 216 1 5 1418 913 164 7 0 chr4 109201827 109201967 -46428153 + B1_Mur4 SINE Alu 3 143 -7 5 1418 780 175 48 0 chr4 109202207 109202333 -46427787 + B1_Mur4 SINE Alu 1 132 -18 5 1418 1063 91 0 14 chr4 109203343 109203483 -46426637 + B1_Mus1 SINE Alu 1 139 -9 5 1418 252 0 0 0 chr4 109203483 109203511 -46426609 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1418 239 241 0 12 chr4 109203516 109203600 -46426520 + GA-rich Low_complexity Low_complexity 2 84 0 5 1418 416 207 148 8 chr4 109203750 109203872 -46426248 + MLT1J1 LTR MaLR 7 145 -299 5 1418 255 255 136 41 chr4 109204042 109204189 -46425931 + L1MC LINE L1 2833 2993 -3153 5 1418 654 277 0 13 chr4 109204264 109204414 -46425706 + B1_Mur2 SINE Alu 2 149 0 5 1418 192 111 0 0 chr4 109204558 109204594 -46425526 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 5 1418 230 214 0 0 chr4 109204633 109204675 -46425445 - MT2B LTR ERVL -366 235 194 5 1418 207 0 0 0 chr4 109204848 109204871 -46425249 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 1418 636 221 0 75 chr4 109204871 109205018 -46425102 - B1_Mur1 SINE Alu -13 136 1 5 1418 23 0 0 0 chr4 109205020 109205043 -46425077 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 857 186 31 31 chr4 109205043 109205250 -46424870 - B3A SINE B2 -9 207 1 5 1418 876 194 0 7 chr4 109205496 109205636 -46424484 + B1_Mur1 SINE Alu 2 140 -9 5 1418 855 134 0 0 chr4 109205636 109205778 -46424342 + (GGA)n Simple_repeat Simple_repeat 1 142 0 5 1418 1121 275 25 18 chr4 109205969 109206250 -46423870 + B4A SINE B4 10 292 0 5 1418 236 28 0 53 chr4 109206748 109206786 -46423334 + (TCTCTG)n Simple_repeat Simple_repeat 4 39 0 5 1418 516 293 45 0 chr4 109208422 109208555 -46421565 - B3 SINE B2 -25 191 53 5 1418 569 279 55 24 chr4 109208548 109208713 -46421407 + B3 SINE B2 20 189 -27 5 1418 6082 17 12 1 chr4 109208741 109209404 -46420716 + L1Md_F3 LINE L1 5915 6584 0 5 1418 23 0 0 0 chr4 109209531 109209554 -46420566 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 2737 215 199 0 chr4 109210180 109210830 -46419290 + RMER1B Other Other 44 822 -244 5 1418 39453 4 0 0 chr4 109210837 109216090 -46414030 + L1Md_A LINE L1 333 5586 -297 5 1418 9658 1 0 0 chr4 109216090 109217086 -46413034 + L1Md_A LINE L1 5587 6582 0 5 1418 2155 188 138 36 chr4 109217133 109217314 -46412806 - RMER13A LTR ERVK -287 573 369 5 1418 1506 60 11 26 chr4 109217314 109217503 -46412617 - B2_Mm2 SINE B2 -9 186 1 5 1418 2155 188 138 36 chr4 109217503 109217841 -46412279 - RMER13A LTR ERVK -492 368 1 5 1418 1182 178 83 0 chr4 109217841 109218071 -46412049 + RMER1B Other Other 807 1055 -11 5 1418 945 113 0 0 chr4 109218088 109218221 -46411899 + B2_Mm2 SINE B2 2 134 -61 5 1418 667 294 96 20 chr4 109218223 109219015 -46411105 + L1M2 LINE L1 2285 3116 -3729 5 1418 200 59 29 0 chr4 109219693 109219727 -46410393 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1418 1086 51 0 0 chr4 109220346 109220483 -46409637 + (TTCCC)n Simple_repeat Simple_repeat 4 140 0 5 1418 1335 248 3 13 chr4 109220518 109220820 -46409300 + ORR1D2 LTR MaLR 72 370 0 5 1418 233 270 35 70 chr4 109221062 109221261 -46408859 + L1M3c LINE L1 1104 1295 -4846 5 1418 1001 217 18 49 chr4 109221953 109222176 -46407944 + B3 SINE B2 1 216 0 5 1418 614 249 154 31 chr4 109222410 109222605 -46407515 - L1_Mur3 LINE L1 -1881 3999 3781 5 1418 899 254 34 41 chr4 109222605 109222897 -46407223 + L1_Mur3 LINE L1 2250 2539 -3341 5 1418 587 236 9 0 chr4 109222899 109223116 -46407004 + CT-rich Low_complexity Low_complexity 1 218 0 5 1418 364 309 71 13 chr4 109223461 109223615 -46406505 - MamRep1879 DNA hAT? 0 216 54 5 1418 474 18 0 0 chr4 109223748 109223803 -46406317 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1418 1298 48 0 0 chr4 109225249 109225396 -46404724 - B1_Mus2 SINE Alu 0 147 1 5 1418 346 276 106 84 chr4 109225425 109225662 -46404458 - RLTR15 LTR ERVK -17 342 101 5 1418 429 184 109 9 chr4 109225683 109225793 -46404327 - RLTR15 LTR ERVK -238 121 1 5 1418 769 260 7 0 chr4 109225987 109226133 -46403987 + RSINE1 SINE B4 15 161 -4 5 1418 249 269 121 121 chr4 109226133 109226169 -46403951 + B2_Mm2 SINE B2 14 195 0 5 1418 23 33 0 0 chr4 109226308 109226338 -46403782 + AT_rich Low_complexity Low_complexity 1 30 0 5 1418 522 224 98 63 chr4 109226340 109226483 -46403637 - B1_Mur3 SINE Alu -1 148 1 5 1418 419 215 75 0 chr4 109226590 109226697 -46403423 - PB1D10 SINE Alu -2 115 1 5 1418 1279 180 5 5 chr4 109227063 109227275 -46402845 - B3 SINE B2 0 216 5 5 1418 767 277 48 19 chr4 109227322 109227528 -46402592 - B3 SINE B2 0 216 5 5 1418 709 172 57 0 chr4 109227546 109227668 -46402452 - B1F2 SINE Alu -20 129 1 5 1418 34688 71 18 4 chr4 109227887 109233134 -46396986 + L1Md_F LINE L1 273 5586 -297 5 1418 8199 62 2 14 chr4 109233134 109234142 -46395978 + L1Md_F2 LINE L1 5587 6582 0 5 1418 839 37 9 0 chr4 109234624 109234731 -46395389 + (CATATA)n Simple_repeat Simple_repeat 1 108 0 5 1418 2211 172 60 13 chr4 109234841 109235224 -46394896 - Lx5 LINE L1 -2 7048 6648 5 1418 201 196 0 0 chr4 109235250 109235296 -46394824 + T-rich Low_complexity Low_complexity 1 46 0 5 1418 193 311 16 16 chr4 109235424 109235486 -46394634 + L2c LINE L2 3103 3164 -223 5 1418 431 301 91 73 chr4 109235571 109235912 -46394208 + ORR1E LTR MaLR 8 354 -5 5 1418 906 265 41 88 chr4 109236102 109236240 -46393880 + B4A SINE B4 13 162 -130 5 1418 2943 110 5 10 chr4 109236240 109236636 -46393484 - ORR1B1 LTR MaLR 0 394 1 5 1418 906 265 41 88 chr4 109236636 109236791 -46393329 + B4A SINE B4 163 292 0 5 1418 525 88 19 10 chr4 109236806 109236909 -46393211 + (GA)n Simple_repeat Simple_repeat 2 105 0 5 1418 210 71 0 0 chr4 109236937 109236965 -46393155 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1418 1138 127 26 31 chr4 109237580 109237775 -46392345 + MTC LTR MaLR 1 194 -213 5 1418 8144 47 8 1 chr4 109237778 109238802 -46391318 + L1_Mus1 LINE L1 5535 6565 -2 5 1418 578 14 14 0 chr4 109238816 109238887 -46391233 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 6 1418 1307 121 0 16 chr4 109238893 109239087 -46391033 + MTC LTR MaLR 223 413 -8 5 1418 208 286 160 32 chr4 109239372 109239466 -46390654 - L2c LINE L2 -1 3386 3281 6 1418 312 27 0 0 chr4 109239495 109239532 -46390588 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1418 195 352 0 0 chr4 109239555 109239609 -46390511 - MIRm SINE MIR -14 262 209 6 1418 2954 69 15 8 chr4 109241166 109241558 -46388562 + L1_Mus3 LINE L1 6240 6634 -4 6 1418 262 354 34 14 chr4 109241955 109242101 -46388019 - L2c LINE L2 -537 2882 2734 6 1418 397 357 101 21 chr4 109242101 109242427 -46387693 + LTR33 LTR ERVL 162 513 -2 6 1418 24 53 0 0 chr4 109242501 109242539 -46387581 + AT_rich Low_complexity Low_complexity 1 38 0 6 1418 296 333 123 18 chr4 109242686 109242857 -46387263 + Tigger5 DNA MER2_type 2 190 -2216 6 1418 6667 148 3 57 chr4 109243084 109244076 -46386044 - Lx2B LINE L1 -275 6725 5795 6 1418 1259 68 0 0 chr4 109244076 109244223 -46385897 - B1_Mus1 SINE Alu -1 147 1 6 1418 6667 148 3 57 chr4 109244223 109244434 -46385686 - Lx2B LINE L1 -1206 5794 5587 6 1418 2911 172 21 11 chr4 109244450 109245015 -46385105 - L1_Mur1 LINE L1 -3605 2281 1711 6 1418 369 273 16 8 chr4 109245291 109245413 -46384707 + L1MC5 LINE L1 7041 7163 -798 6 1418 347 192 237 132 chr4 109245419 109245454 -46384666 + B3 SINE B2 3 23 -193 6 1418 4837 145 68 77 chr4 109245454 109246364 -46383756 + RMER19B LTR ERVK 1 902 0 6 1418 347 192 237 132 chr4 109246364 109246442 -46383678 + B3 SINE B2 24 128 -88 6 1418 497 213 18 9 chr4 109246520 109246629 -46383491 + B3 SINE B2 17 126 -90 6 1418 23 0 0 0 chr4 109246672 109246695 -46383425 + AT_rich Low_complexity Low_complexity 1 23 0 6 1418 220 152 0 0 chr4 109246728 109246761 -46383359 - RSINE1 SINE B4 -40 125 93 6 1418 302 261 169 25 chr4 109246768 109246886 -46383234 + MTE2a LTR MaLR 8 142 -237 6 1418 552 294 19 44 chr4 109246939 109247145 -46382975 + MT2A LTR ERVL 226 426 -107 6 1418 311 312 63 7 chr4 109247284 109247426 -46382694 - L2c LINE L2 -925 2494 2345 6 1418 300 315 85 65 chr4 109248055 109248303 -46381817 - L1MC LINE L1 -2119 5763 5511 6 1418 764 165 8 0 chr4 109248448 109248569 -46381551 - B3 SINE B2 -93 123 2 6 1418 1012 135 0 26 chr4 109248642 109248656 -46381464 - B1_Mur3 SINE Alu 0 149 139 6 1418 227 31 0 30 chr4 109248656 109248689 -46381431 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1418 1012 135 0 26 chr4 109248689 109248826 -46381294 - B1_Mur3 SINE Alu -11 138 2 6 1418 639 94 0 0 chr4 109249298 109249394 -46380726 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1418 596 311 138 36 chr4 109250096 109250429 -46379691 + MLT1A LTR MaLR 1 367 -7 6 1418 249 196 0 0 chr4 109250442 109250498 -46379622 + CT-rich Low_complexity Low_complexity 2 57 0 6 1418 1507 226 82 77 chr4 109250659 109250863 -46379257 - MTD LTR MaLR -14 405 212 6 1418 1196 201 5 19 chr4 109250863 109251076 -46379044 - B3 SINE B2 -5 211 2 6 1418 1507 226 82 77 chr4 109251076 109251274 -46378846 - MTD LTR MaLR -208 211 1 6 1418 2251 95 52 7 chr4 109251441 109251749 -46378371 + RLTRETN_Mm LTR ERVK 1 322 0 6 1418 1150 175 47 24 chr4 109251753 109251964 -46378156 - B3 SINE B2 0 216 1 6 1418 967 168 0 0 chr4 109252105 109252248 -46377872 + B1_Mus2 SINE Alu 5 147 0 6 1418 884 250 17 22 chr4 109252474 109252654 -46377466 - B3A SINE B2 -16 182 4 6 1418 416 200 11 0 chr4 109252688 109252783 -46377337 + CT-rich Low_complexity Low_complexity 1 96 0 6 1418 369 109 0 0 chr4 109252783 109252838 -46377282 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1418 659 214 63 0 chr4 109252839 109252965 -46377155 - B1_Mur2 SINE Alu -13 136 3 6 1418 3914 189 14 8 chr4 109253087 109253737 -46376383 - Lx5 LINE L1 -3 7047 6394 6 1418 231 274 151 0 chr4 109253929 109254035 -46376085 - L1MC4 LINE L1 -7 8035 7914 6 1418 408 208 0 0 chr4 109254057 109254153 -46375967 + CT-rich Low_complexity Low_complexity 2 97 0 6 1418 261 261 111 51 chr4 109254222 109254339 -46375781 - L1MC4 LINE L1 -147 7895 7772 6 1418 619 333 65 4 chr4 109254709 109254938 -46375182 + Lx8 LINE L1 7044 7286 -187 6 1418 504 0 0 0 chr4 109254953 109255009 -46375111 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1418 374 298 31 92 chr4 109255533 109255569 -46374551 - B2_Mm2 SINE B2 -7 188 157 6 1418 216 0 0 0 chr4 109255569 109255593 -46374527 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1418 445 287 142 17 chr4 109255593 109255752 -46374368 - B3A SINE B2 -32 166 5 6 1418 463 240 10 0 chr4 109255857 109255961 -46374159 - BC1_Mm scRNA scRNA -46 106 2 6 1418 680 338 44 84 chr4 109255962 109256511 -46373609 - MLT1J-int LTR MaLR -839 548 22 6 1418 2672 237 51 23 chr4 109256612 109257255 -46372865 - Lx6 LINE L1 -4 7456 6796 6 1418 274 333 40 0 chr4 109257432 109257507 -46372613 + ID SINE ID 1 78 -146 6 1418 206 286 16 0 chr4 109257762 109257825 -46372295 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1418 363 288 0 126 chr4 109257827 109257901 -46372219 - B4 SINE B4 0 292 230 6 1418 238 26 0 49 chr4 109257901 109257942 -46372178 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1418 1167 65 7 0 chr4 109257942 109258080 -46372040 - B1_Mm SINE Alu -8 139 1 6 1418 363 163 0 19 chr4 109258080 109258138 -46371982 - B4 SINE B4 -62 230 175 6 1418 381 225 145 21 chr4 109258174 109258451 -46371669 - MTEa LTR MaLR -13 366 9 6 1418 4772 110 89 30 chr4 109258719 109258881 -46371239 + RMER19A LTR ERVK 1 149 -588 6 1418 956 167 37 26 chr4 109258881 109259072 -46371048 + B2_Mm2 SINE B2 1 193 -2 6 1418 4772 110 89 30 chr4 109259072 109259605 -46370515 + RMER19A LTR ERVK 150 737 0 6 1418 4441 131 83 7 chr4 109259999 109260333 -46369787 - RMER6A LTR ERVK -2 754 394 6 1418 663 13 0 0 chr4 109260333 109260409 -46369711 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1418 4441 131 83 7 chr4 109260409 109260775 -46369345 - RMER6A LTR ERVK -363 393 3 6 1418 359 283 101 21 chr4 109261014 109261202 -46368918 + Lx8 LINE L1 7271 7473 0 6 1418 1505 74 16 11 chr4 109261694 109261885 -46368235 - B2_Mm2 SINE B2 -3 192 1 6 1418 606 256 52 88 chr4 109261914 109262163 -46367957 + MIR SINE MIR 8 247 -15 6 1418 878 179 210 17 chr4 109262189 109262365 -46367755 + B3 SINE B2 4 213 -3 6 1418 28 0 0 0 chr4 109262464 109262492 -46367628 + AT_rich Low_complexity Low_complexity 1 28 0 6 1418 264 295 0 0 chr4 109263190 109263204 -46366916 - B3 SINE B2 -37 179 166 6 1418 330 26 0 0 chr4 109263204 109263243 -46366877 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1418 264 295 0 0 chr4 109263243 109263289 -46366831 - B3 SINE B2 -51 165 120 6 1418 1190 45 0 0 chr4 109263290 109263424 -46366696 + B1_Mus1 SINE Alu 5 138 -10 6 1418 200 35 35 0 chr4 109263424 109263453 -46366667 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1418 914 134 15 0 chr4 109263462 109263596 -46366524 - B3A SINE B2 -62 136 1 6 1418 207 0 0 0 chr4 109263609 109263632 -46366488 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1418 318 291 47 37 chr4 109263650 109263757 -46366363 - B4 SINE B4 -164 128 21 6 1418 297 0 0 0 chr4 109264475 109264508 -46365612 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1418 416 286 153 54 chr4 109264707 109264886 -46365234 + B4A SINE B4 44 245 -47 6 1418 1719 172 134 57 chr4 109264886 109265275 -46364845 + MTD LTR MaLR 1 419 0 6 1418 416 286 153 54 chr4 109265275 109265317 -46364803 + B4A SINE B4 246 287 -5 6 1418 235 375 25 56 chr4 109265351 109265512 -46364608 - L2c LINE L2 -119 3268 3113 6 1418 367 92 333 9 chr4 109265953 109266061 -46364059 - B2_Mm2 SINE B2 -1 194 52 6 1418 1380 85 11 0 chr4 109266084 109266260 -46363860 - B2_Mm1t SINE B2 -14 179 2 6 1418 512 149 11 0 chr4 109266261 109266355 -46363765 + C-rich Low_complexity Low_complexity 2 96 0 6 1418 869 261 29 19 chr4 109266379 109266586 -46363534 - B3 SINE B2 -6 210 2 6 1418 249 259 61 12 chr4 109266587 109266669 -46363451 - L1ME2z LINE L1 -419 6025 5940 6 1418 640 237 35 82 chr4 109266713 109266883 -46363237 + RSINE1 SINE B4 4 165 0 6 1418 1082 234 105 94 chr4 109267060 109267433 -46362687 - MTE2a LTR MaLR -2 377 1 6 1418 250 229 86 0 chr4 109267434 109267504 -46362616 - L1ME2z LINE L1 -692 5470 5395 6 1418 491 236 172 4 chr4 109267589 109267732 -46362388 + B3A SINE B2 2 167 -49 6 1418 379 279 39 0 chr4 109267754 109267858 -46362262 - L1MA4 LINE L1 -404 5896 5789 6 1418 297 0 0 0 chr4 109267858 109267891 -46362229 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1418 3596 147 57 5 chr4 109267892 109268507 -46361613 - RMER6D LTR ERVK -70 650 4 6 1418 227 316 0 0 chr4 109268549 109268606 -46361514 - L1ME2z LINE L1 -1175 4971 4915 6 1418 1253 75 0 0 chr4 109268668 109268815 -46361305 + B1_Mm SINE Alu 1 147 0 6 1418 468 0 0 0 chr4 109268884 109268936 -46361184 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 6 1418 420 248 96 45 chr4 109269055 109269211 -46360909 - L1ME2z LINE L1 -1450 4696 4533 6 1418 2245 144 14 6 chr4 109269310 109269666 -46360454 + RLTR15 LTR ERVK 1 359 0 6 1418 635 74 0 21 chr4 109269706 109269803 -46360317 - RLTR11A2 LTR ERVK -16 511 417 6 1418 2301 75 0 26 chr4 109269804 109270117 -46360003 + Lx3A LINE L1 6569 6873 -108 6 1418 1290 190 67 28 chr4 109270123 109270405 -46359715 - RLTR11A2 LTR ERVK -227 300 8 6 1418 22 35 0 0 chr4 109270752 109270781 -46359339 + AT_rich Low_complexity Low_complexity 1 29 0 6 1418 286 288 42 17 chr4 109270942 109271062 -46359058 - MER99 DNA hAT? -663 168 46 6 1418 1003 194 156 0 chr4 109271275 109271461 -46358659 - B3 SINE B2 0 216 2 6 1418 2175 116 30 59 chr4 109272643 109272982 -46357138 - ORR1A4 LTR MaLR 0 329 1 6 1418 324 0 0 0 chr4 109273129 109273165 -46356955 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1418 689 268 0 7 chr4 109273166 109273309 -46356811 - RSINE1 SINE B4 -22 143 2 6 1418 1831 154 18 0 chr4 109273526 109273798 -46356322 - ORR1B2 LTR MaLR -10 357 81 6 1418 323 235 84 109 chr4 109273816 109273933 -46356187 - L1M5 LINE L1 -1643 4503 4388 6 1418 222 37 0 0 chr4 109273933 109273960 -46356160 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1418 323 235 84 109 chr4 109273960 109273980 -46356140 - L1M5 LINE L1 -1759 4387 4383 6 1418 3115 63 5 3 chr4 109273980 109274364 -46355756 - L1_Mus3 LINE L1 0 6638 6254 6 1418 323 235 84 109 chr4 109274364 109274464 -46355656 - L1M5 LINE L1 -1764 4382 4273 6 1418 1301 48 0 0 chr4 109274517 109274664 -46355456 - B1_Mm SINE Alu 0 147 1 6 1418 279 275 14 0 chr4 109274779 109274848 -46355272 - RSINE1 SINE B4 -87 78 9 6 1418 30616 22 1 3 chr4 109274884 109280151 -46349969 + L1Md_A LINE L1 352 5586 -297 6 1418 8806 40 0 1 chr4 109280151 109281148 -46348972 + L1Md_A LINE L1 5587 6582 0 6 1418 474 298 38 0 chr4 109281148 109281279 -46348841 - B1F1 SINE Alu -13 136 1 7 1418 252 138 15 30 chr4 109281289 109281356 -46348764 + CT-rich Low_complexity Low_complexity 1 66 0 7 1418 1335 72 0 0 chr4 109281358 109281538 -46348582 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1418 580 308 109 29 chr4 109281546 109281994 -46348126 - L1M5 LINE L1 -2188 3958 3475 6 1418 295 353 12 17 chr4 109282025 109282198 -46347922 - L1M5 LINE L1 -3666 2480 2309 6 1418 456 258 98 25 chr4 109282461 109282624 -46347496 - MER20 DNA MER1_type -6 213 39 7 1418 389 332 58 8 chr4 109282661 109282904 -46347216 - Charlie5 DNA MER1_type -1 2623 2369 7 1418 561 321 40 35 chr4 109282924 109283171 -46346949 + ORR1E LTR MaLR 28 264 -106 7 1418 689 268 0 7 chr4 109283286 109283429 -46346691 + RSINE1 SINE B4 2 143 -22 7 1418 432 0 0 0 chr4 109283430 109283478 -46346642 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1418 560 228 58 47 chr4 109283632 109283851 -46346269 + ORR1B1 LTR MaLR 41 223 -1357 7 1418 857 345 42 62 chr4 109283886 109284016 -46346104 + ORR1B1-int LTR MaLR 227 344 -1236 7 1418 4793 160 86 69 chr4 109284016 109284903 -46345217 - RMER19B LTR ERVK 0 902 1 7 1418 857 345 42 62 chr4 109284903 109285223 -46344897 + ORR1B1-int LTR MaLR 345 668 -912 7 1418 725 280 108 27 chr4 109285226 109285523 -46344597 - ORR1E LTR MaLR -38 321 1 7 1418 246 32 0 0 chr4 109285988 109286019 -46344101 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1418 25 31 0 0 chr4 109286053 109286085 -46344035 + AT_rich Low_complexity Low_complexity 1 32 0 7 1418 628 296 152 23 chr4 109286689 109286952 -46343168 + ORR1B1-int LTR MaLR 1111 1407 -173 7 1418 311 336 99 43 chr4 109287087 109287320 -46342800 + ORR1E LTR MaLR 8 253 -106 7 1418 237 237 0 0 chr4 109287320 109287379 -46342741 + (CAT)n Simple_repeat Simple_repeat 1 59 0 7 1418 984 114 35 7 chr4 109287379 109287520 -46342600 - B1_Mur3 SINE Alu 0 149 5 7 1418 1522 278 64 41 chr4 109287525 109287578 -46342542 + L1MA4 LINE L1 3725 3782 -2361 7 1418 3247 47 10 20 chr4 109287578 109287970 -46342150 + L1Md_F2 LINE L1 6194 6581 -1 7 1418 1522 278 64 41 chr4 109287970 109288569 -46341551 + L1MA4 LINE L1 3783 4392 -1751 7 1418 549 110 0 0 chr4 109288576 109288658 -46341462 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 7 1418 1263 61 0 0 chr4 109288658 109288805 -46341315 + B1_Mus2 SINE Alu 1 147 0 7 1418 272 335 95 19 chr4 109288805 109288827 -46341293 + L1MA4 LINE L1 4395 4421 -1722 7 1418 519 60 0 0 chr4 109288827 109288894 -46341226 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 7 1418 434 334 26 5 chr4 109288894 109289081 -46341039 + L1MA4 LINE L1 4422 4619 -1524 7 1418 403 236 113 18 chr4 109289178 109289346 -46340774 + L1MA4 LINE L1 4615 4798 -1345 7 1418 261 83 0 0 chr4 109289346 109289382 -46340738 + (AATAG)n Simple_repeat Simple_repeat 5 40 0 7 1418 267 213 52 26 chr4 109289413 109289490 -46340630 + L1MA4 LINE L1 4877 4955 -1188 7 1418 348 148 0 0 chr4 109289551 109289605 -46340515 - B2_Mm2 SINE B2 -95 100 47 7 1418 1367 86 23 0 chr4 109289652 109289827 -46340293 - B2_Mm2 SINE B2 -14 181 3 7 1418 585 40 0 0 chr4 109289848 109289924 -46340196 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1418 682 250 29 126 chr4 109289934 109290172 -46339948 + B4 SINE B4 6 220 -72 7 1418 982 74 22 0 chr4 109290041 109290176 -46339944 + B1_Mur3 SINE Alu 10 147 -2 7 1418 238 333 12 138 chr4 109290207 109290367 -46339753 + B4 SINE B4 82 221 -71 7 1418 1716 295 51 49 chr4 109290409 109291359 -46338761 + L1MA4 LINE L1 4938 5938 -362 7 1418 310 263 9 56 chr4 109291400 109291501 -46338619 - RLTR20C LTR ERVK -17 561 404 7 1418 347 230 52 16 chr4 109291524 109291639 -46338481 - RLTR20C LTR ERVK -87 491 369 7 1418 316 204 120 87 chr4 109291771 109291921 -46338199 + MT2B2 LTR ERVL 124 278 -306 7 1418 919 82 29 22 chr4 109291810 109291948 -46338172 + B1_Mur4 SINE Alu 12 150 0 7 1418 2796 259 134 4 chr4 109292037 109292843 -46337277 - Lx8 LINE L1 -2 7471 6561 7 1418 1300 257 71 44 chr4 109292900 109293449 -46336671 - L1M2 LINE L1 -3385 2758 2195 7 1418 865 228 12 12 chr4 109293472 109293636 -46336484 - RSINE1 SINE B4 0 165 2 7 1418 432 0 0 0 chr4 109293683 109293731 -46336389 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1418 390 239 14 0 chr4 109293731 109293802 -46336318 - ID4 SINE ID -11 72 1 7 1418 527 279 179 21 chr4 109293843 109294077 -46336043 + B4 SINE B4 4 274 -18 7 1418 39 74 0 0 chr4 109294276 109294357 -46335763 + AT_rich Low_complexity Low_complexity 1 81 0 7 1418 1091 226 35 0 chr4 109294369 109294568 -46335552 + B3 SINE B2 1 206 -10 7 1418 1105 225 14 14 chr4 109294643 109294859 -46335261 - B3 SINE B2 0 216 1 7 1418 461 208 123 0 chr4 109295262 109295368 -46334752 - PB1 SINE Alu -2 125 7 7 1418 252 234 143 38 chr4 109295606 109295739 -46334381 + L1MA10 LINE L1 6170 6316 -18 7 1418 583 285 97 0 chr4 109295826 109295991 -46334129 - B3A SINE B2 -17 181 1 7 1418 326 294 32 21 chr4 109295993 109296087 -46334033 - PB1D10 SINE Alu -1 116 22 7 1418 327 250 26 0 chr4 109296157 109296233 -46333887 - ID2 SINE ID -4 79 2 7 1418 661 288 114 18 chr4 109296242 109296688 -46333432 - MER97c DNA MER1_type? -481 609 121 7 1418 925 250 0 92 chr4 109296685 109296914 -46333206 + B3 SINE B2 9 216 0 7 1418 341 305 98 62 chr4 109297030 109297254 -46332866 - ORR1E LTR MaLR -106 253 22 7 1418 2495 297 83 121 chr4 109297280 109298106 -46332014 - ORR1E-int LTR MaLR -31 1549 709 7 1418 213 39 0 0 chr4 109298106 109298132 -46331988 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1418 2495 297 83 121 chr4 109298132 109298383 -46331737 - ORR1E-int LTR MaLR -872 708 560 7 1418 261 0 0 0 chr4 109298383 109298412 -46331708 + (TTC)n Simple_repeat Simple_repeat 2 30 0 7 1418 2495 297 83 121 chr4 109298412 109298943 -46331177 - ORR1E-int LTR MaLR -1021 559 1 7 1418 326 323 99 53 chr4 109298958 109299249 -46330871 - ORR1E LTR MaLR -17 362 55 7 1418 1211 222 74 10 chr4 109299292 109299609 -46330511 - MTD LTR MaLR -8 371 44 7 1418 396 59 0 0 chr4 109299792 109299843 -46330277 + (TATG)n Simple_repeat Simple_repeat 4 54 0 7 1418 709 236 12 54 chr4 109299851 109300017 -46330103 - B3 SINE B2 -57 159 1 7 1418 333 258 118 88 chr4 109300215 109300419 -46329701 + Lx8 LINE L1 7181 7390 -83 7 1418 874 167 156 4 chr4 109300218 109300460 -46329660 + RMER1C Other Other 1059 1338 -4 7 1418 741 294 196 31 chr4 109300472 109301476 -46328644 - L1MC3 LINE L1 -23 7762 6595 7 1418 195 42 0 0 chr4 109301476 109301500 -46328620 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1418 1231 75 0 0 chr4 109301500 109301647 -46328473 - B1_Mus1 SINE Alu 0 148 2 7 1418 250 336 105 9 chr4 109301775 109301880 -46328240 - MIRb SINE MIR -92 176 62 7 1418 307 235 219 21 chr4 109302363 109302550 -46327570 + Lx9 LINE L1 7381 7604 -40 7 1418 207 0 0 0 chr4 109303432 109303455 -46326665 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1418 632 274 27 27 chr4 109303547 109303697 -46326423 - RSINE1 SINE B4 -13 152 3 7 1418 23 0 0 0 chr4 109303980 109304003 -46326117 + AT_rich Low_complexity Low_complexity 1 23 0 7 1418 568 229 32 8 chr4 109304038 109304161 -46325959 - B3A SINE B2 -16 182 57 7 1418 1540 99 5 9 chr4 109304173 109304397 -46325723 - Lx2 LINE L1 0 6997 6775 7 1418 2171 71 3 7 chr4 109304395 109304677 -46325443 - Lx2 LINE L1 -352 6645 6365 7 1418 4341 131 42 25 chr4 109304670 109305384 -46324736 + Lx2 LINE L1 5645 6370 -627 7 1418 6385 29 0 0 chr4 109305451 109306148 -46323972 + L1Md_T LINE L1 5886 6582 0 7 1418 5903 71 1 22 chr4 109306414 109306921 -46323199 + L1_Mus1 LINE L1 5209 5716 -851 7 1418 1227 51 0 0 chr4 109306921 109307059 -46323061 + B1_Mm SINE Alu 1 138 -9 7 1418 265 24 23 23 chr4 109307059 109307102 -46323018 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1418 5903 30 0 23 chr4 109307102 109307677 -46322443 + L1_Mus1 LINE L1 5717 6276 -291 7 1418 523 196 22 0 chr4 109307724 109307816 -46322304 + B3 SINE B2 108 201 -15 7 1418 638 156 0 60 chr4 109307825 109307941 -46322179 - PB1D9 SINE Alu 0 120 12 7 1418 845 184 14 0 chr4 109308333 109308474 -46321646 - B1_Mus2 SINE Alu 0 147 5 7 1418 342 0 0 0 chr4 109308501 109308539 -46321581 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1418 702 288 68 38 chr4 109308588 109308782 -46321338 - B4A SINE B4 -49 243 40 7 1418 1342 237 24 64 chr4 109308782 109309156 -46320964 - ORR1E LTR MaLR 0 359 1 7 1418 702 288 68 38 chr4 109309156 109309196 -46320924 - B4A SINE B4 -253 39 2 7 1418 1175 101 0 0 chr4 109309386 109309535 -46320585 + B1_Mur4 SINE Alu 2 150 0 7 1418 183 184 0 0 chr4 109309536 109309574 -46320546 + A-rich Low_complexity Low_complexity 1 38 0 7 1418 198 276 51 38 chr4 109309883 109309962 -46320158 - L2a LINE L2 -56 3370 3291 7 1418 286 289 26 0 chr4 109310253 109310329 -46319791 + ID4_ SINE ID 6 83 0 7 1418 689 299 160 20 chr4 109310733 109311133 -46318987 - L1MA6 LINE L1 -1 6299 5844 7 1418 1073 81 47 0 chr4 109311559 109311708 -46318412 + Lx LINE L1 6140 6295 -359 7 1418 1338 111 71 14 chr4 109311708 109311918 -46318202 + Lx2 LINE L1 6775 6996 -1 7 1418 1275 41 7 0 chr4 109312344 109312489 -46317631 + B1_Mm SINE Alu 2 147 0 7 1418 210 154 0 0 chr4 109312490 109312529 -46317591 + A-rich Low_complexity Low_complexity 1 39 0 7 1418 347 362 30 18 chr4 109312678 109312844 -46317276 - L2 LINE L2 -872 2547 2380 7 1418 252 214 0 0 chr4 109312858 109312919 -46317201 - L1MC LINE L1 -784 5660 5597 7 1418 757 238 62 112 chr4 109313016 109313338 -46316782 - ORR1E LTR MaLR -47 312 7 7 1418 949 251 175 26 chr4 109313341 109313689 -46316431 - MTD LTR MaLR 0 419 20 7 1418 540 0 0 0 chr4 109313791 109313851 -46316269 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1419 499 275 80 55 chr4 109314070 109314270 -46315850 - L1MC4 LINE L1 -422 7620 7416 7 1419 468 218 9 129 chr4 109314271 109314387 -46315733 + PB1 SINE Alu 15 116 -1 7 1419 645 205 66 0 chr4 109314498 109314620 -46315500 - B1_Mur1 SINE Alu -19 130 1 7 1419 213 39 0 0 chr4 109314627 109314653 -46315467 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1419 604 207 52 0 chr4 109314653 109314769 -46315351 - B1_Mus1 SINE Alu -9 139 18 7 1419 560 297 36 0 chr4 109314793 109314931 -46315189 - ID_B1 SINE B4 0 224 82 7 1419 331 202 34 68 chr4 109314958 109315075 -46315045 - L1MC4 LINE L1 -721 7321 7209 7 1419 602 240 58 3 chr4 109315076 109315264 -46314856 + L1MA4 LINE L1 4813 5068 -1075 7 1419 282 246 28 42 chr4 109315329 109315401 -46314719 + ID4 SINE ID 1 71 -12 7 1419 474 65 0 0 chr4 109315403 109315465 -46314655 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1419 416 267 9 54 chr4 109315513 109315635 -46314485 + PB1D10 SINE Alu 1 147 0 7 1419 995 268 112 51 chr4 109315637 109316009 -46314111 + L1MA4 LINE L1 5083 5514 -786 7 1419 943 181 0 0 chr4 109316009 109316153 -46313967 - B1_Mur1 SINE Alu -5 144 1 7 1419 995 297 25 143 chr4 109316153 109316241 -46313879 + L1MA4 LINE L1 5515 5581 -719 7 1419 2866 44 23 17 chr4 109316241 109316585 -46313535 + ORR1A1 LTR MaLR 1 346 0 8 1419 14829 60 6 1 chr4 109316585 109318368 -46311752 + ORR1A1-int LTR MaLR 1 1792 0 8 1419 2901 51 30 0 chr4 109318368 109318704 -46311416 + ORR1A1 LTR MaLR 1 346 0 8 1419 995 297 25 143 chr4 109318704 109319099 -46311021 + L1MA4 LINE L1 5582 5923 -377 7 1419 2333 116 34 11 chr4 109319103 109319453 -46310667 + RLTR15 LTR ERVK 1 358 -1 8 1419 743 275 220 17 chr4 109319494 109319794 -46310326 - MTD LTR MaLR -13 406 46 8 1419 288 292 0 0 chr4 109319979 109320044 -46310076 - ID4_ SINE ID -2 81 17 8 1419 578 289 120 5 chr4 109320531 109320740 -46309380 - L1MA4A LINE L1 -406 5897 5665 8 1419 1397 69 31 16 chr4 109320818 109320971 -46309149 + B2_Mm2 SINE B2 2 155 -40 8 1419 230 0 0 32 chr4 109320971 109321002 -46309118 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 8 1419 1397 69 31 16 chr4 109321002 109321021 -46309099 + B2_Mm2 SINE B2 156 173 -22 8 1419 1270 68 0 0 chr4 109321021 109321168 -46308952 + B1_Mm SINE Alu 1 147 0 8 1419 1397 69 31 16 chr4 109321168 109321185 -46308935 + B2_Mm2 SINE B2 174 195 0 8 1419 1578 263 139 30 chr4 109321266 109321827 -46308293 + Lx9 LINE L1 6466 7087 -557 8 1419 2061 173 15 42 chr4 109321830 109322235 -46307885 - ORR1B1 LTR MaLR 0 394 1 8 1419 525 261 105 152 chr4 109322235 109322466 -46307654 + Lx9 LINE L1 7087 7306 -338 8 1419 1267 28 0 7 chr4 109322466 109322608 -46307512 + B1_Mm SINE Alu 1 141 -6 8 1419 525 261 105 152 chr4 109322608 109322737 -46307383 + Lx9 LINE L1 7307 7430 -214 8 1419 240 111 0 0 chr4 109322773 109322809 -46307311 + (CATA)n Simple_repeat Simple_repeat 4 39 0 8 1419 820 249 120 20 chr4 109322910 109323251 -46306869 - L1MB7 LINE L1 -53 6131 5757 8 1419 271 93 18 53 chr4 109323398 109323419 -46306701 + polypyrimidine Low_complexity Low_complexity 38 58 0 8 1419 1124 114 73 17 chr4 109323419 109323598 -46306522 - B2_Mm2 SINE B2 -3 192 4 8 1419 271 93 18 53 chr4 109323598 109323633 -46306487 + polypyrimidine Low_complexity Low_complexity 4 37 0 8 1419 971 157 0 6 chr4 109323627 109323807 -46306313 + CT-rich Low_complexity Low_complexity 1 179 0 8 1419 932 172 8 3 chr4 109323825 109324137 -46305983 + CT-rich Low_complexity Low_complexity 1 313 0 8 1419 450 233 57 33 chr4 109324327 109324451 -46305669 + B1F SINE Alu 1 128 -20 8 1419 217 327 37 65 chr4 109324730 109324838 -46305282 + MIRc SINE MIR 44 148 -120 8 1419 25 31 0 0 chr4 109325468 109325500 -46304620 + AT_rich Low_complexity Low_complexity 1 32 0 8 1419 362 209 0 15 chr4 109327072 109327140 -46302980 - PB1D9 SINE Alu -6 114 48 8 1419 215 169 0 48 chr4 109329376 109329438 -46300682 + A-rich Low_complexity Low_complexity 1 59 0 8 1419 387 0 0 0 chr4 109331087 109331130 -46298990 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1419 504 0 0 0 chr4 109331264 109331320 -46298800 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1419 693 92 0 84 chr4 109333105 109333236 -46296884 + L1Md_F2 LINE L1 6461 6580 -2 8 1419 729 63 0 0 chr4 109334577 109334672 -46295448 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 8 1419 237 308 75 0 chr4 109340891 109340998 -46289122 - B1F SINE Alu -29 120 6 8 1419 1193 86 18 0 chr4 109341022 109341185 -46288935 + B2_Mm2 SINE B2 1 166 -29 8 1419 1172 97 86 0 chr4 109341293 109341468 -46288652 + B2_Mm1t SINE B2 4 193 0 8 1419 719 196 22 7 chr4 109341470 109341609 -46288511 + B1_Mur3 SINE Alu 1 141 -8 8 1419 360 0 0 0 chr4 109341610 109341650 -46288470 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1419 1321 97 6 0 chr4 109341754 109341930 -46288190 + B2_Mm2 SINE B2 1 177 -18 8 1419 853 188 0 7 chr4 109341943 109342088 -46288032 + B1_Mur4 SINE Alu 2 145 -5 8 1419 29 28 0 0 chr4 109342103 109342139 -46287981 + AT_rich Low_complexity Low_complexity 1 36 0 8 1419 668 223 93 20 chr4 109342139 109342290 -46287830 - B3A SINE B2 -36 162 1 8 1419 234 0 0 0 chr4 109342311 109342337 -46287783 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1419 1177 44 0 0 chr4 109342337 109342474 -46287646 - B1_Mus2 SINE Alu -9 138 2 8 1419 297 0 0 0 chr4 109342479 109342512 -46287608 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1419 228 207 130 54 chr4 109342591 109342683 -46287437 - RLTR25B LTR ERVK -490 538 440 8 1419 719 169 0 8 chr4 109342603 109342722 -46287398 - B1_Mur4 SINE Alu -32 118 1 8 1419 21 57 0 0 chr4 109343267 109343302 -46286818 + AT_rich Low_complexity Low_complexity 1 35 0 8 1419 1062 65 29 0 chr4 109343542 109343681 -46286439 + B1_Mm SINE Alu 5 147 0 8 1419 1148 68 0 7 chr4 109343683 109343830 -46286290 + B1_Mus2 SINE Alu 2 147 0 8 1419 294 89 0 56 chr4 109343835 109343906 -46286214 + (CAAAAA)n Simple_repeat Simple_repeat 2 68 0 8 1419 868 127 71 0 chr4 109343918 109344044 -46286076 + B1_Mus1 SINE Alu 1 135 -13 8 1419 980 199 134 99 chr4 109344044 109344328 -46285792 - MT2B LTR ERVL -3 598 305 8 1419 1281 113 109 168 chr4 109344316 109344383 -46285737 - ORR1A4 LTR MaLR -8 321 287 8 1419 1196 54 0 13 chr4 109344383 109344532 -46285588 - B1_Mm SINE Alu 0 147 1 8 1419 1281 113 109 168 chr4 109344532 109344803 -46285317 - ORR1A4 LTR MaLR -43 286 3 8 1419 743 182 167 95 chr4 109344803 109344940 -46285180 - MT2B LTR ERVL -205 270 82 8 1419 1459 33 66 0 chr4 109344940 109345121 -46284999 + B2_Mm1a SINE B2 1 193 0 8 1419 743 152 0 120 chr4 109345121 109345210 -46284910 - MT2B LTR ERVL -513 88 1 8 1419 309 306 107 0 chr4 109345321 109345442 -46284678 + L1MD3 LINE L1 7453 7586 -409 8 1419 219 277 21 0 chr4 109345491 109345538 -46284582 - PB1D9 SINE Alu -70 50 3 8 1419 760 261 30 6 chr4 109345689 109345855 -46284265 + B3A SINE B2 1 170 -28 8 1419 197 292 194 0 chr4 109346272 109346344 -46283776 + MIRc SINE MIR 17 102 -166 8 1419 830 203 0 20 chr4 109346425 109346571 -46283549 - B1_Mur3 SINE Alu -6 143 1 8 1419 306 0 0 0 chr4 109347531 109347565 -46282555 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1419 445 250 0 0 chr4 109347569 109347669 -46282451 - PB1D9 SINE Alu -20 100 1 8 1419 940 203 38 19 chr4 109347727 109347938 -46282182 + B3 SINE B2 2 216 0 8 1419 302 236 13 53 chr4 109348016 109348092 -46282028 - ID4 SINE ID -7 76 4 8 1419 192 40 0 0 chr4 109348322 109348347 -46281773 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1419 21 0 0 0 chr4 109348502 109348523 -46281597 + AT_rich Low_complexity Low_complexity 1 21 0 8 1419 221 228 0 0 chr4 109349196 109349253 -46280867 + (CGG)n Simple_repeat Simple_repeat 2 58 0 8 1419 216 149 0 0 chr4 109349486 109349533 -46280587 + (CCCG)n Simple_repeat Simple_repeat 2 48 0 8 1419 382 263 0 29 chr4 109350774 109350876 -46279244 - PB1D7 SINE Alu -17 103 5 8 1419 213 296 0 85 chr4 109351096 109351155 -46278965 - B4 SINE B4 -151 141 88 8 1419 485 179 0 13 chr4 109351321 109351400 -46278720 - ID4 SINE ID -3 80 3 8 1419 1162 49 14 0 chr4 109351653 109351797 -46278323 + B1_Mus2 SINE Alu 2 147 0 8 1419 331 282 0 53 chr4 109351944 109352019 -46278101 + ID4 SINE ID 7 77 -6 8 1419 204 208 0 40 chr4 109352021 109352071 -46278049 + (CATA)n Simple_repeat Simple_repeat 1 48 0 8 1419 1492 198 139 74 chr4 109352231 109352727 -46277393 - RLTR11A2 LTR ERVK -3 524 1 8 1419 848 163 7 0 chr4 109352727 109352862 -46277258 - B1_Mur4 SINE Alu -13 137 2 8 1419 1166 75 0 0 chr4 109353074 109353221 -46276899 - B1_Mus2 SINE Alu 0 147 1 8 1419 591 185 9 36 chr4 109353221 109353333 -46276787 + PB1D9 SINE Alu 12 120 0 8 1419 388 202 220 0 chr4 109353712 109353821 -46276299 + B1_Mur4 SINE Alu 1 133 -17 8 1419 276 186 0 0 chr4 109353868 109353927 -46276193 + GA-rich Low_complexity Low_complexity 2 60 0 8 1419 242 250 0 0 chr4 109354322 109354378 -46275742 + ID4 SINE ID 26 81 -2 8 1419 1555 245 28 52 chr4 109354417 109355033 -46275087 - L1MB3 LINE L1 -28 6155 5555 8 1419 317 306 31 0 chr4 109355076 109355174 -46274946 - PB1D7 SINE Alu -19 101 1 8 1419 774 190 29 0 chr4 109355251 109355388 -46274732 + B1_Mus1 SINE Alu 1 141 -7 8 1419 432 213 0 0 chr4 109355611 109355686 -46274434 - PB1D9 SINE Alu -14 106 32 8 1419 479 309 36 0 chr4 109355726 109355836 -46274284 - B1F SINE Alu -31 118 5 8 1419 3377 179 67 8 chr4 109355841 109356494 -46273626 - RLTR17 LTR ERVK 0 692 1 8 1419 450 241 130 0 chr4 109356685 109356793 -46273327 - B1_Mur3 SINE Alu -15 134 13 8 1419 271 309 311 11 chr4 109357614 109357794 -46272326 + MIR SINE MIR 29 262 0 8 1419 719 239 0 30 chr4 109357827 109357995 -46272125 - RSINE1 SINE B4 -1 164 2 8 1419 180 309 0 76 chr4 109358040 109358145 -46271975 - MIR3 SINE MIR -21 187 91 8 1419 303 314 8 33 chr4 109358306 109358428 -46271692 + PB1 SINE Alu 5 123 -4 8 1419 219 139 0 0 chr4 109358432 109358468 -46271652 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 8 1419 258 206 0 0 chr4 109358852 109358920 -46271200 + CT-rich Low_complexity Low_complexity 1 68 0 8 1419 778 232 86 0 chr4 109358953 109359104 -46271016 - RSINE1 SINE B4 0 165 2 8 1419 458 235 19 19 chr4 109359327 109359431 -46270689 + MTC-int LTR MaLR 873 976 -282 8 1419 324 143 0 0 chr4 109359447 109359503 -46270617 + (TCC)n Simple_repeat Simple_repeat 3 58 0 8 1419 3855 180 20 37 chr4 109359566 109360410 -46269710 + MERVL_2A-int LTR ERVL 802 1631 -4130 8 1419 4534 168 76 9 chr4 109360410 109361256 -46268864 - RMER19B LTR ERVK 0 902 1 8 1419 2907 204 47 6 chr4 109361256 109361922 -46268198 + MERVL_2A-int LTR ERVL 1626 2318 -3443 8 1419 596 152 3 10 chr4 109361922 109362038 -46268082 - MTA_Mm LTR MaLR -246 161 41 8 1419 422 293 8 33 chr4 109362057 109362177 -46267943 + MER20 DNA MER1_type 88 204 -15 8 1419 254 333 0 0 chr4 109362191 109362254 -46267866 - MER5A DNA MER1_type 0 189 127 8 1419 537 302 18 47 chr4 109362603 109362773 -46267347 - RSINE1 SINE B4 0 165 1 8 1419 295 147 84 42 chr4 109362931 109363002 -46267118 - RCHARR1 DNA MER1_type -143 831 758 8 1419 298 254 30 0 chr4 109363180 109363247 -46266873 + RMER30 DNA MER1_type 133 201 -1 8 1419 839 122 15 0 chr4 109363267 109363398 -46266722 - RLTR12A LTR ERVK 0 568 436 8 1419 1419 200 10 57 chr4 109363415 109363712 -46266408 - RLTR12A LTR ERVK -245 323 41 8 1419 883 329 47 29 chr4 109363721 109364092 -46266028 + MERVL_2A-int LTR ERVL 2981 3359 -2171 8 1419 240 35 0 0 chr4 109364092 109364121 -46265999 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 1419 883 329 47 29 chr4 109364121 109364194 -46265926 + MERVL_2A-int LTR ERVL 3360 3432 -2098 8 1419 1008 301 93 33 chr4 109364240 109364789 -46265331 + MERVL_2A-int LTR ERVL 3650 4231 -1299 8 1419 1382 222 104 18 chr4 109364860 109365195 -46264925 - ORR1D2 LTR MaLR -6 364 1 9 1419 429 293 25 25 chr4 109365196 109365315 -46264805 + PB1D9 SINE Alu 1 119 -1 9 1419 188 32 97 0 chr4 109365401 109365432 -46264688 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 9 1419 1010 232 88 21 chr4 109365551 109365789 -46264331 - MTE2a LTR MaLR 0 379 126 9 1419 2428 184 81 122 chr4 109366106 109366156 -46263964 - RCHARR1 DNA MER1_type -1 973 937 9 1419 903 166 14 0 chr4 109366156 109366301 -46263819 - B1_Mus2 SINE Alu 0 147 1 9 1419 2428 184 81 122 chr4 109366301 109366511 -46263609 - RCHARR1 DNA MER1_type -38 936 761 9 1419 836 95 0 214 chr4 109366511 109366698 -46263422 + B1_Mm SINE Alu 1 147 0 9 1419 2428 184 81 122 chr4 109366698 109366722 -46263398 - RCHARR1 DNA MER1_type -214 760 760 8 1419 730 240 156 0 chr4 109366722 109366901 -46263219 - B3 SINE B2 -9 207 1 9 1419 2428 184 81 122 chr4 109366901 109367357 -46262763 - RCHARR1 DNA MER1_type -214 760 262 9 1419 375 237 51 10 chr4 109367419 109367517 -46262603 + ID_B1 SINE B4 90 191 -33 9 1419 243 272 138 39 chr4 109367517 109367546 -46262574 + B1_Mur4 SINE Alu 10 149 -1 9 1419 225 237 0 0 chr4 109367584 109367622 -46262498 - B1F2 SINE Alu -111 38 1 9 1419 2040 232 24 117 chr4 109367640 109368314 -46261806 - RMER19C LTR ERVK 0 611 1 9 1419 258 253 39 26 chr4 109368327 109368404 -46261716 - PB1D10 SINE Alu -5 112 35 9 1419 3572 31 33 2 chr4 109368480 109368903 -46261217 - RLTR10C LTR ERVK 0 436 1 9 1419 34579 37 7 12 chr4 109368903 109373272 -46256848 - MMERVK10C-int LTR ERVK 0 7581 3235 9 1419 1584 40 54 37 chr4 109373273 109373507 -46256613 - RLTR10C LTR ERVK -226 210 1 9 1419 887 130 0 30 chr4 109374058 109374193 -46255927 - B1_Mus1 SINE Alu -2 146 16 9 1419 499 250 34 81 chr4 109374061 109374209 -46255911 - B4 SINE B4 -71 221 81 9 1419 1187 62 0 0 chr4 109374291 109374436 -46255684 - B1_Mm SINE Alu -2 145 1 9 1419 248 230 38 63 chr4 109374453 109374532 -46255588 - B1F1 SINE Alu -7 142 66 9 1419 329 226 55 64 chr4 109374703 109374812 -46255308 - RMER15 LTR ERVL -398 177 70 9 1419 767 115 92 0 chr4 109375014 109375144 -46254976 + B1_Mus1 SINE Alu 6 147 -1 9 1419 334 322 0 11 chr4 109375326 109375417 -46254703 - PB1D10 SINE Alu -20 97 8 9 1419 1164 50 0 0 chr4 109375647 109375787 -46254333 + B1_Mus2 SINE Alu 2 141 -6 9 1419 472 233 107 15 chr4 109375908 109376039 -46254081 - B1F SINE Alu -6 143 1 9 1419 241 329 82 0 chr4 109376814 109376887 -46253233 - MLT2F LTR ERVL -396 267 189 9 1419 291 262 179 41 chr4 109376922 109377117 -46253003 - ID_B1 SINE B4 -2 222 1 9 1419 1082 194 14 23 chr4 109377213 109377429 -46252691 + B3 SINE B2 2 215 -1 9 1419 22 35 0 0 chr4 109377432 109377461 -46252659 + AT_rich Low_complexity Low_complexity 1 29 0 9 1419 539 355 185 0 chr4 109377545 109377928 -46252192 - RMER15-int LTR ERVL -4536 463 10 9 1419 365 312 62 14 chr4 109377932 109378078 -46252042 - RMER15 LTR ERVL -1 574 422 9 1419 386 231 243 44 chr4 109378077 109378258 -46251862 + RMER15 LTR ERVL 284 500 -75 9 1419 229 120 60 0 chr4 109378747 109378797 -46251323 + CT-rich Low_complexity Low_complexity 5 57 0 9 1419 626 239 141 21 chr4 109379333 109379525 -46250595 - B3 SINE B2 0 216 2 9 1419 2483 172 92 44 chr4 109379525 109380024 -46250096 - RMER19B LTR ERVK -161 741 219 9 1419 262 216 0 19 chr4 109380014 109380066 -46250054 - B3A SINE B2 -147 51 1 9 1419 785 218 35 6 chr4 109380103 109380274 -46249846 - B3A SINE B2 -18 180 5 9 1419 28 0 0 0 chr4 109380557 109380585 -46249535 + AT_rich Low_complexity Low_complexity 1 28 0 9 1419 393 22 0 0 chr4 109380625 109380671 -46249449 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1419 409 238 108 10 chr4 109380671 109380773 -46249347 - RSINE1 SINE B4 -20 145 34 9 1419 292 248 149 7 chr4 109381297 109381451 -46248669 + L1MEc LINE L1 675 850 -5550 9 1419 821 218 122 40 chr4 109381453 109381779 -46248341 + MTD LTR MaLR 25 405 -14 9 1419 595 257 56 0 chr4 109381782 109381926 -46248194 + MTE2a LTR MaLR 228 379 0 9 1419 910 51 0 0 chr4 109381970 109382087 -46248033 + B1_Mus1 SINE Alu 1 117 -31 9 1419 279 202 22 67 chr4 109382010 109382100 -46248020 + RLTR25B LTR ERVK 441 526 -502 9 1419 560 231 4 9 chr4 109382503 109382627 -46247493 - B1_Mur1 SINE Alu -20 129 3 9 1419 423 0 0 0 chr4 109382638 109382685 -46247435 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 9 1419 317 247 13 27 chr4 109382685 109382760 -46247360 - RSINE1 SINE B4 0 165 92 9 1419 245 65 95 16 chr4 109383084 109383147 -46246973 + A-rich Low_complexity Low_complexity 3 70 0 9 1419 275 232 18 0 chr4 109383165 109383221 -46246899 - RSINE1 SINE B4 -69 96 40 9 1419 1116 62 7 7 chr4 109383529 109383675 -46246445 - B1_Mus2 SINE Alu 0 147 2 9 1419 185 294 14 42 chr4 109383951 109384022 -46246098 + L4 LINE RTE 1726 1794 -235 9 1419 1096 83 0 20 chr4 109384269 109384417 -46245703 - B1_Mm SINE Alu 0 147 3 9 1419 338 339 0 43 chr4 109384465 109384582 -46245538 - PB1D10 SINE Alu -5 112 1 9 1419 228 240 26 13 chr4 109384718 109384794 -46245326 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1419 22 0 0 0 chr4 109385440 109385462 -46244658 + AT_rich Low_complexity Low_complexity 1 22 0 9 1419 208 186 47 0 chr4 109385863 109385906 -46244214 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 9 1419 396 295 35 41 chr4 109386072 109386217 -46243903 + MamRep1879 DNA hAT? 70 213 -3 9 1419 531 101 0 0 chr4 109386535 109386614 -46243506 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 9 1419 503 266 0 83 chr4 109387292 109387448 -46242672 + B1_Mur1 SINE Alu 5 147 -2 9 1419 1229 249 132 23 chr4 109387729 109388116 -46242004 - ORR1D-int LTR MaLR -292 1078 650 9 1419 229 196 0 0 chr4 109388117 109388173 -46241947 - Lx5 LINE L1 -1070 5980 5925 9 1419 1635 72 29 33 chr4 109388230 109388474 -46241646 - L1_Mus2 LINE L1 -10 6556 6314 9 1419 905 164 0 25 chr4 109388474 109388637 -46241483 - Lx5 LINE L1 -712 5165 5007 9 1419 2379 73 55 21 chr4 109388624 109388705 -46241415 - Lx5 LINE L1 -2211 3666 3587 9 1419 2843 85 28 5 chr4 109388705 109389096 -46241024 + MTB LTR MaLR 1 400 0 9 1419 2379 73 55 21 chr4 109389096 109389394 -46240726 - Lx5 LINE L1 -2291 3586 3274 9 1419 1956 167 78 15 chr4 109389393 109389805 -46240315 - Lx5 LINE L1 -3139 2738 2301 9 1419 530 100 20 7 chr4 109389805 109389911 -46240209 - B1_Mus1 SINE Alu -37 112 1 9 1419 1248 132 68 74 chr4 109389911 109390002 -46240118 - Lx5 LINE L1 -4512 1365 1273 9 1419 252 0 0 0 chr4 109390002 109390030 -46240090 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 1419 991 108 139 0 chr4 109390030 109390188 -46239932 - B2_Mm2 SINE B2 -15 180 1 9 1419 1248 174 45 19 chr4 109390188 109390492 -46239628 - Lx5 LINE L1 -6456 1272 889 9 1419 980 121 41 76 chr4 109391208 109391291 -46238829 - B2_Mm2 SINE B2 -4 191 112 9 1419 495 0 0 0 chr4 109391291 109391346 -46238774 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 9 1419 1102 44 0 0 chr4 109391348 109391485 -46238635 - B1_Mm SINE Alu -10 137 1 9 1419 980 121 41 76 chr4 109391485 109391595 -46238525 - B2_Mm2 SINE B2 -84 111 2 9 1419 198 143 0 0 chr4 109391619 109391654 -46238466 + (TCC)n Simple_repeat Simple_repeat 3 37 0 9 1419 902 62 139 0 chr4 109391665 109391794 -46238326 - B1_Mus2 SINE Alu 0 147 1 9 1419 677 238 221 4 chr4 109392019 109392272 -46237848 + RMER1B Other Other 398 705 -361 9 1419 1208 73 77 27 chr4 109392664 109392847 -46237273 - B2_Mm2 SINE B2 -2 193 2 9 1419 760 242 42 42 chr4 109393503 109393719 -46236401 - B3 SINE B2 0 216 1 9 1419 236 318 120 9 chr4 109393845 109393953 -46236167 - ID_B1 SINE B4 -6 218 99 9 1419 23 33 0 0 chr4 109394330 109394360 -46235760 + AT_rich Low_complexity Low_complexity 1 30 0 9 1419 1518 229 7 109 chr4 109395575 109395997 -46234123 - MTE2a LTR MaLR 0 379 1 9 1419 310 315 14 0 chr4 109396137 109396210 -46233910 + RSINE1 SINE B4 58 131 -34 9 1419 204 40 0 0 chr4 109396961 109396986 -46233134 + (CATA)n Simple_repeat Simple_repeat 4 28 0 9 1419 5263 132 44 11 chr4 109397145 109398068 -46232052 - Lx3B LINE L1 -2 6971 6018 9 1419 1052 72 0 0 chr4 109398466 109398604 -46231516 + B1_Mus2 SINE Alu 1 138 -9 9 1419 209 57 0 28 chr4 109398604 109398640 -46231480 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1419 1596 42 0 0 chr4 109398652 109398844 -46231276 + B2_Mm1t SINE B2 2 193 0 9 1419 545 261 8 23 chr4 109399574 109399707 -46230413 - RSINE1 SINE B4 -31 134 4 9 1419 222 315 0 0 chr4 109400468 109400522 -46229598 - ID4_ SINE ID -28 55 2 9 1419 656 275 155 35 chr4 109400668 109400984 -46229136 - MLT1A1 LTR MaLR -12 396 43 9 1419 1418 270 75 52 chr4 109403032 109403646 -46226474 - L1MA7 LINE L1 -27 6264 5637 9 1419 303 93 0 0 chr4 109403925 109403968 -46226152 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 9 1419 198 0 0 0 chr4 109403981 109404003 -46226117 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1419 264 167 231 77 chr4 109404003 109404107 -46226013 - B1_Mus1 SINE Alu 0 149 30 9 1419 364 324 27 38 chr4 109404247 109404374 -46225746 + L1M5 LINE L1 3118 3245 -2901 9 1419 3533 53 49 0 chr4 109404374 109404827 -46225293 - MT2C_Mm LTR ERVL 0 475 1 9 1419 364 324 27 38 chr4 109404827 109404885 -46225235 + L1M5 LINE L1 3246 3300 -2846 9 1419 780 145 0 0 chr4 109404972 109405103 -46225017 + (T)n Simple_repeat Simple_repeat 1 131 0 9 1419 933 82 37 0 chr4 109405106 109405241 -46224879 - B1_Mus2 SINE Alu -6 141 2 9 1419 290 296 170 0 chr4 109405241 109405310 -46224810 + L1M5 LINE L1 3511 3604 -2542 9 1419 4441 54 24 29 chr4 109405310 109405900 -46224220 - LTRIS_Mus LTR ERV1 0 587 1 9 1419 290 296 170 0 chr4 109405900 109405989 -46224131 + L1M5 LINE L1 3605 3695 -2451 9 1419 524 193 9 0 chr4 109405999 109406113 -46224007 + CT-rich Low_complexity Low_complexity 2 116 0 9 1419 405 0 0 0 chr4 109406113 109406158 -46223962 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1419 821 148 44 0 chr4 109406176 109406311 -46223809 - B1_Mus1 SINE Alu -5 143 3 9 1419 412 206 173 22 chr4 109406457 109406636 -46223484 + L1MA5 LINE L1 5769 5974 -326 9 1419 396 40 0 0 chr4 109407132 109407182 -46222938 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1419 589 322 0 0 chr4 109407189 109407332 -46222788 - RSINE1 SINE B4 -20 145 3 9 1419 28 79 0 0 chr4 109407500 109407563 -46222557 + AT_rich Low_complexity Low_complexity 1 63 0 9 1419 198 0 0 0 chr4 109407810 109407832 -46222288 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1419 512 233 29 52 chr4 109409377 109409513 -46220607 - ID_B1 SINE B4 -3 221 89 1 1419 24 32 0 0 chr4 109410029 109410060 -46220060 + AT_rich Low_complexity Low_complexity 1 31 0 1 1419 267 173 0 0 chr4 109410221 109410273 -46219847 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 1419 790 298 118 0 chr4 109410314 109410619 -46219501 - MER58B DNA MER1_type 0 341 1 1 1419 224 186 33 17 chr4 109411069 109411129 -46218991 + CT-rich Low_complexity Low_complexity 3 63 0 1 1419 408 287 0 19 chr4 109411132 109411235 -46218885 - ID_B1 SINE B4 -1 223 123 1 1419 404 366 42 64 chr4 109412131 109412414 -46217706 + L2 LINE L2 2567 2843 -576 1 1419 974 374 117 24 chr4 109413278 109413982 -46216138 + L2a LINE L2 10 781 -2638 1 1419 703 280 26 0 chr4 109413982 109414175 -46215945 - B3A SINE B2 0 198 1 1 1419 974 374 117 24 chr4 109414175 109414447 -46215673 + L2a LINE L2 782 1077 -2342 1 1419 238 360 138 18 chr4 109414486 109414653 -46215467 + L2a LINE L2 3042 3228 -198 1 1419 26 64 0 0 chr4 109416884 109416931 -46213189 + AT_rich Low_complexity Low_complexity 1 47 0 1 1419 809 319 60 27 chr4 109417897 109418232 -46211888 - MLT1A LTR MaLR -4 370 25 1 1419 275 250 25 133 chr4 109418512 109418632 -46211488 - MIRb SINE MIR -48 220 114 1 1419 1059 304 47 42 chr4 109421299 109421660 -46208460 - MLT1A LTR MaLR -5 369 7 1 1419 352 361 33 25 chr4 109421921 109422043 -46208077 + PB1 SINE Alu 2 124 -3 1 1419 495 304 36 0 chr4 109422434 109422572 -46207548 + RSINE1 SINE B4 4 146 -19 1 1419 1188 159 80 104 chr4 109422608 109422973 -46207147 - Lx9 LINE L1 -2 7642 7287 1 1419 21 0 0 0 chr4 109422999 109423020 -46207100 + AT_rich Low_complexity Low_complexity 1 21 0 1 1419 1999 170 174 26 chr4 109423115 109423575 -46206545 - RLTR11A LTR ERVK 0 528 1 1 1419 3329 178 65 7 chr4 109423576 109424283 -46205837 - MYSERV16_I-int LTR ERVK -1 2325 1578 1 1419 708 45 0 0 chr4 109425240 109425328 -46204792 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 1 1419 445 286 116 26 chr4 109425332 109425522 -46204598 - B4A SINE B4 -85 207 1 1 1419 192 339 39 92 chr4 109425831 109425961 -46204159 - MIRb SINE MIR -145 123 1 1 1419 270 0 0 0 chr4 109426180 109426210 -46203910 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1419 186 133 0 0 chr4 109426297 109426327 -46203793 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1419 222 37 0 0 chr4 109426882 109426909 -46203211 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 1 1419 315 65 0 0 chr4 109426942 109426988 -46203132 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1419 293 320 103 0 chr4 109427760 109427857 -46202263 - ID_B1 SINE B4 -1 223 117 1 1419 213 333 196 0 chr4 109427920 109428058 -46202062 + L2a LINE L2 2424 2588 -831 1 1419 255 312 61 44 chr4 109428464 109428578 -46201542 + L2a LINE L2 3267 3382 -44 1 1419 201 94 0 0 chr4 109428963 109428995 -46201125 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1 1419 236 286 79 8 chr4 109429450 109429577 -46200543 - MamRep564 Unknown Unknown -124 233 98 1 1419 210 71 0 0 chr4 109431214 109431242 -46198878 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1419 26 0 0 0 chr4 109432458 109432484 -46197636 + AT_rich Low_complexity Low_complexity 1 26 0 1 1419 465 34 0 0 chr4 109432928 109432987 -46197133 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1419 21 36 0 0 chr4 109434783 109434811 -46195309 + AT_rich Low_complexity Low_complexity 1 28 0 1 1419 21 0 0 0 chr4 109436042 109436063 -46194057 + AT_rich Low_complexity Low_complexity 1 21 0 1 1419 21 0 0 0 chr4 109436397 109436418 -46193702 + AT_rich Low_complexity Low_complexity 1 21 0 1 1419 21 0 0 0 chr4 109436849 109436870 -46193250 + AT_rich Low_complexity Low_complexity 1 21 0 1 1419 378 0 0 0 chr4 109439705 109439747 -46190373 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 1419 21 36 0 0 chr4 109439983 109440011 -46190109 + AT_rich Low_complexity Low_complexity 1 28 0 1 1419 631 275 134 33 chr4 109441484 109441819 -46188301 - L1MA4 LINE L1 -388 5912 5544 1 1419 981 245 30 20 chr4 109442107 109442307 -46187813 + B3 SINE B2 6 207 -9 1 1419 228 275 45 27 chr4 109442341 109442453 -46187667 - L1MA4 LINE L1 -756 5428 5315 1 1419 267 268 95 35 chr4 109442895 109443011 -46187109 + PB1 SINE Alu 5 127 0 1 1419 488 162 16 35 chr4 109443118 109443232 -46186888 + ORR1A2 LTR MaLR 1 117 -277 1 1419 519 172 0 50 chr4 109443325 109443484 -46186636 + GA-rich Low_complexity Low_complexity 2 152 0 1 1419 1376 164 7 8 chr4 109443572 109443810 -46186310 + ORR1A2 LTR MaLR 81 350 -9 1 1419 23 33 0 0 chr4 109444133 109444163 -46185957 + AT_rich Low_complexity Low_complexity 1 30 0 1 1419 347 234 13 13 chr4 109444395 109444473 -46185647 - B4 SINE B4 -214 78 1 1 1419 35 0 0 0 chr4 109444605 109444640 -46185480 + AT_rich Low_complexity Low_complexity 1 35 0 1 1420 2483 45 102 0 chr4 109445297 109445611 -46184509 - ORR1A1 LTR MaLR 0 346 1 1 1420 331 309 182 0 chr4 109445700 109445740 -46184380 + B1_Mur2 SINE Alu 1 149 0 1 1420 356 267 12 0 chr4 109445740 109445826 -46184294 + ID_B1 SINE B4 138 224 0 1 1420 2728 61 0 6 chr4 109446186 109446534 -46183586 - L1_Mus1 LINE L1 0 6567 6222 1 1420 773 192 196 11 chr4 109446637 109446816 -46183304 + B3 SINE B2 3 214 -2 1 1420 4088 37 8 6 chr4 109446837 109447351 -46182769 + L1Md_F3 LINE L1 6070 6584 0 1 1420 300 325 48 24 chr4 109448612 109448738 -46181382 - MLT1A1 LTR MaLR -260 148 20 1 1420 202 152 0 61 chr4 109448982 109449009 -46181111 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1420 835 158 7 20 chr4 109449009 109449158 -46180962 - B1_Mus1 SINE Alu -1 147 1 1 1420 202 152 0 61 chr4 109449158 109449179 -46180941 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1420 216 170 0 0 chr4 109449268 109449321 -46180799 + T-rich Low_complexity Low_complexity 1 53 0 1 1420 271 327 122 15 chr4 109449530 109449735 -46180385 - L2 LINE L2 -542 2877 2651 1 1420 197 333 74 0 chr4 109449829 109449910 -46180210 - L2 LINE L2 -957 2462 2376 1 1420 225 0 0 0 chr4 109450178 109450203 -46179917 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1420 1197 48 0 0 chr4 109450203 109450350 -46179770 - B1_Mus2 SINE Alu 0 147 1 1 1420 255 236 83 0 chr4 109451048 109451120 -46179000 + L2a LINE L2 3344 3421 -5 1 1420 854 139 0 0 chr4 109451785 109451907 -46178213 - B2_Mm2 SINE B2 -73 122 1 1 1420 776 59 0 262 chr4 109452341 109452524 -46177596 + B1_Mus1 SINE Alu 1 135 -13 1 1420 360 0 0 0 chr4 109452524 109452564 -46177556 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1420 328 302 44 44 chr4 109452866 109453001 -46177119 + MamRep434 DNA TcMar 1 135 -291 1 1420 375 60 0 0 chr4 109453694 109453744 -46176376 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1420 824 97 198 13 chr4 109453855 109454012 -46176108 - B2_Mm2 SINE B2 -8 187 2 1 1420 362 283 198 19 chr4 109454021 109454183 -46175937 - B3A SINE B2 -6 192 2 1 1420 441 0 0 0 chr4 109455029 109455078 -46175042 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1420 293 190 0 25 chr4 109457115 109457196 -46172924 + G-rich Low_complexity Low_complexity 2 80 0 1 1420 194 228 0 50 chr4 109457254 109457278 -46172842 + L2 LINE L2 2220 2243 -1176 1 1420 1436 64 21 0 chr4 109457278 109457465 -46172655 - B2_Mm2 SINE B2 -4 191 1 1 1420 194 228 0 50 chr4 109457465 109457500 -46172620 + L2 LINE L2 2244 2276 -1143 1 1420 286 326 105 0 chr4 109457933 109458028 -46172092 + PB1D10 SINE Alu 7 111 -6 1 1420 296 374 64 6 chr4 109458153 109458309 -46171811 + MIRb SINE MIR 24 188 -80 1 1420 365 296 0 0 chr4 109458660 109458741 -46171379 - ID4_ SINE ID -1 82 2 1 1420 479 172 20 0 chr4 109458796 109458895 -46171225 + (TATATG)n Simple_repeat Simple_repeat 1 101 0 1 1420 630 280 134 15 chr4 109459046 109459307 -46170813 - Lx8 LINE L1 -285 7188 6897 1 1420 22 35 0 0 chr4 109459354 109459383 -46170737 + AT_rich Low_complexity Low_complexity 1 29 0 1 1420 558 0 0 0 chr4 109459595 109459657 -46170463 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1420 194 333 99 21 chr4 109460973 109461114 -46169006 - MER5A DNA MER1_type -7 182 31 1 1420 494 291 168 5 chr4 109461307 109461497 -46168623 + ID_B1 SINE B4 2 222 -2 1 1420 180 0 0 0 chr4 109462229 109462249 -46167871 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1420 214 358 80 40 chr4 109463263 109463388 -46166732 - MIRb SINE MIR -112 156 27 1 1420 426 204 0 0 chr4 109463818 109463911 -46166209 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1420 414 0 0 0 chr4 109465368 109465414 -46164706 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1420 278 168 0 69 chr4 109466569 109466638 -46163482 - B1_Mur2 SINE Alu -6 143 79 1 1420 21 0 0 0 chr4 109466841 109466862 -46163258 + AT_rich Low_complexity Low_complexity 1 21 0 1 1420 485 268 110 77 chr4 109466950 109467132 -46162988 + B3A SINE B2 1 188 -10 1 1420 22 35 0 0 chr4 109467575 109467604 -46162516 + AT_rich Low_complexity Low_complexity 1 29 0 1 1420 261 83 0 0 chr4 109467815 109467851 -46162269 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1420 1517 302 32 19 chr4 109468235 109468759 -46161361 - Lx7 LINE L1 -388 7308 6778 1 1420 578 276 72 18 chr4 109468769 109468935 -46161185 - B3 SINE B2 -40 176 2 1 1420 207 0 0 0 chr4 109471036 109471059 -46159061 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1420 429 115 0 30 chr4 109471589 109471688 -46158432 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 1 1420 929 115 29 0 chr4 109471688 109471827 -46158293 - B1_Mus1 SINE Alu 0 148 6 1 1420 576 90 274 8 chr4 109471856 109471974 -46158146 - B2_Mm2 SINE B2 -30 165 1 1 1420 1973 70 56 3 chr4 109471976 109472261 -46157859 + MTA_Mm LTR MaLR 1 300 -96 1 1420 554 159 37 18 chr4 109472237 109472346 -46157774 - B1_Mus1 SINE Alu -32 116 6 1 1420 1308 72 16 16 chr4 109472357 109472541 -46157579 - B2_Mm2 SINE B2 -10 185 2 1 1420 276 30 0 0 chr4 109473599 109473632 -46156488 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1420 228 324 15 0 chr4 109473789 109473857 -46156263 + Cheshire DNA MER1_type 182 250 -2170 1 1420 182 379 17 0 chr4 109473921 109473979 -46156141 + L2a LINE L2 3352 3410 -16 1 1420 457 308 0 17 chr4 109474599 109474718 -46155402 - PB1D10 SINE Alu 0 117 1 1 1420 360 0 0 0 chr4 109475314 109475354 -46154766 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1420 225 195 248 25 chr4 109475423 109475544 -46154576 + L1M5 LINE L1 5542 5689 -490 1 1420 937 323 81 120 chr4 109475550 109475897 -46154223 + MTE-int LTR MaLR 553 889 -691 1 1420 651 209 8 8 chr4 109475897 109476027 -46154093 + B1_Mur2 SINE Alu 1 130 -19 1 1420 225 0 0 0 chr4 109476027 109476052 -46154068 + (CTAA)n Simple_repeat Simple_repeat 1 25 0 1 1420 937 323 81 120 chr4 109476052 109476196 -46153924 + MTE-int LTR MaLR 890 1025 -555 1 1420 1995 186 76 3 chr4 109476200 109476583 -46153537 - MTD LTR MaLR -8 411 1 1 1420 584 286 98 47 chr4 109476613 109476848 -46153272 + MTE-int LTR MaLR 1116 1362 -218 1 1420 895 287 95 17 chr4 109476884 109477242 -46152878 - Lx8 LINE L1 -18 7455 7070 1 1420 238 210 9 57 chr4 109477679 109477785 -46152335 + A-rich Low_complexity Low_complexity 6 106 0 1 1420 614 356 50 54 chr4 109480800 109481079 -46149041 + B4A SINE B4 7 284 -8 1 1420 346 291 73 22 chr4 109481265 109481402 -46148718 - L1ME3A LINE L1 -9 6164 6021 1 1420 209 341 137 48 chr4 109481691 109482048 -46148072 + L2 LINE L2 2061 2449 -970 1 1420 1467 44 16 11 chr4 109482982 109483167 -46146953 + B2_Mm2 SINE B2 2 187 -8 1 1420 289 245 99 9 chr4 109484090 109484201 -46145919 + Lx5 LINE L1 6925 7045 -5 1 1420 241 295 98 0 chr4 109484827 109484888 -46145232 + B1_Mus2 SINE Alu 2 68 -79 1 1420 204 158 0 0 chr4 109485689 109485727 -46144393 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1420 943 113 8 0 chr4 109486551 109486684 -46143436 - B1_Mus1 SINE Alu -13 135 2 1 1420 21 0 0 0 chr4 109487296 109487317 -46142803 + AT_rich Low_complexity Low_complexity 1 21 0 1 1420 742 292 68 4 chr4 109487780 109488031 -46142089 - B4A SINE B4 -18 274 8 1 1420 336 237 184 0 chr4 109489125 109489201 -46140919 + 5S rRNA rRNA 1 90 -31 1 1420 189 329 143 0 chr4 109489760 109489830 -46140290 - MIR SINE MIR -164 98 19 1 1420 180 0 0 0 chr4 109490596 109490616 -46139504 + (CTG)n Simple_repeat Simple_repeat 2 21 0 1 1420 616 109 15 23 chr4 109490616 109490742 -46139378 + (TCCCC)n Simple_repeat Simple_repeat 3 127 0 1 1420 348 250 26 0 chr4 109491079 109491155 -46138965 - ID4_ SINE ID -4 79 2 1 1420 233 91 0 43 chr4 109491194 109491240 -46138880 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 1 1420 350 296 216 9 chr4 109491255 109491371 -46138749 - RSINE1 SINE B4 -24 141 2 1 1420 271 250 59 12 chr4 109491914 109491999 -46138121 - MIRc SINE MIR -114 154 66 1 1420 234 211 32 175 chr4 109494290 109494326 -46135794 + MT2B2 LTR ERVL 137 154 -430 1 1420 363 327 0 37 chr4 109494326 109494434 -46135686 + PB1D10 SINE Alu 1 104 -13 1 1420 261 0 0 0 chr4 109494435 109494464 -46135656 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1420 360 351 59 5 chr4 109494522 109494708 -46135412 - ORR1D-int LTR MaLR -1100 270 75 1 1420 694 270 224 23 chr4 109494765 109495073 -46135047 - MTEa LTR MaLR -9 370 1 1 1420 850 146 40 34 chr4 109495432 109495581 -46134539 - RMER10B LTR ERVL 0 398 249 1 1420 1306 270 194 7 chr4 109495562 109495984 -46134136 + MTE-int LTR MaLR 971 1471 -109 1 1420 273 315 76 8 chr4 109496258 109496389 -46133731 - B1F SINE Alu -8 141 2 1 1420 280 262 209 50 chr4 109497172 109497373 -46132747 - Kanga2_a DNA Tc2 -233 655 423 1 1420 460 319 109 19 chr4 109497505 109497825 -46132295 - Kanga2_a DNA Tc2 -469 419 71 1 1420 1010 66 14 22 chr4 109498392 109498531 -46131589 + B1_Mus1 SINE Alu 11 148 0 1 1420 3483 148 57 54 chr4 109498958 109498978 -46131142 - RMER19B LTR ERVK -7 895 882 1 1420 2029 157 9 11 chr4 109498978 109499325 -46130795 + ORR1A1 LTR MaLR 1 346 0 1 1420 3483 148 57 54 chr4 109499325 109499991 -46130129 - RMER19B LTR ERVK -21 881 207 1 1420 679 163 61 103 chr4 109500000 109500213 -46129907 - RMER19B LTR ERVK -728 174 1 1 1420 330 87 0 0 chr4 109500444 109500490 -46129630 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 1420 413 258 184 6 chr4 109501104 109501283 -46128837 - B3 SINE B2 -2 214 4 3 1420 667 240 0 27 chr4 109502080 109502230 -46127890 - B1_Mur2 SINE Alu 0 149 4 4 1420 656 236 55 17 chr4 109503136 109503317 -46126803 - RMER12 LTR ERVK 0 1322 1135 5 1420 4685 134 35 91 chr4 109503357 109503501 -46126619 - RMER12 LTR ERVK -420 902 792 6 1420 249 33 0 0 chr4 109503501 109503531 -46126589 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1420 4685 134 35 91 chr4 109503531 109503684 -46126436 - RMER12 LTR ERVK -531 791 665 6 1420 1114 65 0 0 chr4 109503684 109503822 -46126298 + B1_Mus2 SINE Alu 1 138 -9 8 1420 4685 134 35 91 chr4 109503822 109504457 -46125663 - RMER12 LTR ERVK -658 664 21 6 1420 651 270 82 0 chr4 109504526 109504722 -46125398 - B3 SINE B2 0 216 5 9 1420 1594 32 0 0 chr4 109504762 109504948 -46125172 + B2_Mm1a SINE B2 1 186 -7 1 1420 1232 163 13 31 chr4 109505007 109505235 -46124885 + URR1A DNA MER1_type 3 226 0 1 1420 612 335 68 60 chr4 109505235 109505571 -46124549 + MER44C DNA MER2_type 390 728 -5 1 1420 246 32 0 0 chr4 109505585 109505616 -46124504 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1420 276 30 0 0 chr4 109505616 109505648 -46124472 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1420 2644 139 47 8 chr4 109505735 109506206 -46123914 - L1_Mur2 LINE L1 -983 4894 4406 1 1420 3523 165 46 8 chr4 109506208 109506862 -46123258 + L1_Mur2 LINE L1 4923 5601 -276 1 1420 216 0 0 0 chr4 109506911 109506935 -46123185 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1420 180 0 0 0 chr4 109507599 109507619 -46122501 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1420 630 284 0 84 chr4 109507698 109507852 -46122268 + RSINE1 SINE B4 25 165 0 1 1420 1901 206 119 59 chr4 109508303 109508949 -46121171 + Lx9 LINE L1 6955 7639 -5 1 1420 2588 243 97 10 chr4 109509105 109509817 -46120303 - Lx7 LINE L1 -289 7407 6634 2 1420 564 15 0 0 chr4 109510439 109510504 -46119616 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1420 931 167 91 25 chr4 109511198 109511395 -46118725 - URR1A DNA MER1_type 0 226 17 2 1420 577 271 8 25 chr4 109511492 109511613 -46118507 + RSINE1 SINE B4 42 160 -5 2 1420 183 80 0 0 chr4 109511613 109511638 -46118482 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 2 1420 534 284 65 0 chr4 109511886 109512041 -46118079 + RSINE1 SINE B4 1 165 0 2 1420 198 176 0 0 chr4 109513853 109513904 -46116216 + T-rich Low_complexity Low_complexity 4 54 0 2 1420 318 318 0 54 chr4 109515968 109516061 -46114059 + B3A SINE B2 2 89 -109 2 1420 387 245 0 38 chr4 109516068 109516174 -46113946 - Tigger7 DNA MER2_type -164 2327 2229 2 1420 668 310 65 5 chr4 109516158 109516372 -46113748 - Tigger7 DNA MER2_type -2083 408 182 2 1420 4613 70 38 20 chr4 109516700 109517357 -46112763 - Lx3_Mus LINE L1 0 7009 6341 2 1420 1850 72 71 4 chr4 109517360 109517612 -46112508 - Lx3_Mus LINE L1 -1139 5870 5602 2 1420 309 304 51 0 chr4 109518345 109518424 -46111696 - B1F2 SINE Alu -65 84 2 3 1420 226 362 0 0 chr4 109518363 109518432 -46111688 - B4 SINE B4 -145 147 79 3 1420 293 331 57 52 chr4 109518458 109518702 -46111418 - MIR SINE MIR 0 268 10 3 1420 1132 62 0 0 chr4 109520226 109520370 -46109750 - B1_Mus1 SINE Alu 0 148 5 3 1420 26 0 0 0 chr4 109520734 109520760 -46109360 + AT_rich Low_complexity Low_complexity 1 26 0 3 1420 356 40 0 20 chr4 109521083 109521134 -46108986 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 3 1420 1043 73 0 0 chr4 109521136 109521273 -46108847 - B1_Mus1 SINE Alu -11 137 1 3 1420 25 0 0 0 chr4 109521317 109521342 -46108778 + AT_rich Low_complexity Low_complexity 1 25 0 3 1420 4557 87 74 12 chr4 109521366 109522375 -46107745 + L1VL2 LINE L1 274 1345 -2270 3 1420 1444 182 4 4 chr4 109522349 109522630 -46107490 + L1_Mur2 LINE L1 5164 5444 -433 3 1420 251 45 0 0 chr4 109522628 109522672 -46107448 + Lx LINE L1 6609 6652 -2 4 1420 696 271 148 22 chr4 109522794 109523024 -46107096 + B4A SINE B4 2 260 -32 4 1420 341 263 7 145 chr4 109523107 109523245 -46106875 + MT2B LTR ERVL 155 273 -328 4 1420 461 257 18 54 chr4 109523121 109523232 -46106888 + B1_Mur1 SINE Alu 2 108 -41 4 1420 379 321 51 44 chr4 109523232 109523258 -46106862 + B4 SINE B4 87 224 -68 4 1420 3790 145 86 59 chr4 109523258 109523351 -46106769 + L1_Mur3 LINE L1 2970 3052 -2828 4 1420 477 117 29 0 chr4 109523351 109523454 -46106666 - L1Md_F2 LINE L1 -1 6581 6476 4 1420 3790 145 86 59 chr4 109523454 109524282 -46105838 + L1_Mur3 LINE L1 3053 3916 -1964 4 1420 22 0 0 0 chr4 109525435 109525457 -46104663 + AT_rich Low_complexity Low_complexity 1 22 0 4 1420 247 342 336 70 chr4 109526345 109526694 -46103426 - MLT1J LTR MaLR -68 444 3 4 1420 247 274 35 12 chr4 109526721 109526732 -46103388 + MT2B2 LTR ERVL 153 165 -419 4 1420 334 333 83 9 chr4 109526732 109526841 -46103279 + PB1D10 SINE Alu 1 117 0 5 1420 439 302 8 23 chr4 109528042 109528174 -46101946 - ID_B1 SINE B4 -1 223 94 5 1420 36 23 0 0 chr4 109528269 109528312 -46101808 + AT_rich Low_complexity Low_complexity 1 43 0 5 1420 1025 276 76 22 chr4 109528541 109528897 -46101223 + MTE2b LTR MaLR 1 375 -4 5 1420 281 350 48 19 chr4 109528955 109529060 -46101060 - MIR SINE MIR -85 123 16 5 1420 359 303 110 0 chr4 109529129 109529238 -46100882 + B1F2 SINE Alu 2 122 -27 5 1420 314 335 36 54 chr4 109529263 109529430 -46100690 + RSINE1 SINE B4 2 165 0 5 1420 215 125 0 24 chr4 109529931 109529972 -46100148 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 5 1420 549 320 39 30 chr4 109529972 109530175 -46099945 - ID_B1 SINE B4 -16 208 4 5 1420 216 274 138 35 chr4 109530831 109530918 -46099202 + L2c LINE L2 3291 3386 -1 5 1420 237 349 124 26 chr4 109532638 109532791 -46097329 - L2b LINE L2 -123 3252 3085 6 1420 260 291 45 34 chr4 109532881 109532970 -46097150 + L2b LINE L2 3286 3375 0 6 1420 331 347 67 19 chr4 109533152 109533358 -46096762 + MIRb SINE MIR 36 255 -7 6 1420 21 36 0 0 chr4 109533821 109533849 -46096271 + AT_rich Low_complexity Low_complexity 1 28 0 6 1420 24 0 0 0 chr4 109534115 109534139 -46095981 + AT_rich Low_complexity Low_complexity 1 24 0 6 1420 22 35 0 0 chr4 109534836 109534865 -46095255 + AT_rich Low_complexity Low_complexity 1 29 0 6 1420 270 297 132 25 chr4 109537029 109537150 -46092970 - ID_B1 SINE B4 -77 147 14 6 1420 2432 96 11 14 chr4 109537458 109537827 -46092293 + Lx2 LINE L1 6630 6997 0 6 1420 250 292 167 0 chr4 109537991 109538087 -46092033 - PB1D9 SINE Alu -3 117 6 6 1420 885 232 20 20 chr4 109538673 109538871 -46091249 - B3 SINE B2 -6 210 13 6 1420 22 0 0 0 chr4 109539462 109539484 -46090636 + AT_rich Low_complexity Low_complexity 1 22 0 7 1420 327 333 87 23 chr4 109539526 109539744 -46090376 + L2c LINE L2 3112 3343 -44 7 1420 994 251 90 25 chr4 109542837 109543204 -46086916 - Lx9 LINE L1 -1 7643 7253 7 1420 505 261 26 72 chr4 109543316 109543469 -46086651 - B1_Mur1 SINE Alu -3 146 1 7 1420 655 265 7 42 chr4 109544024 109544166 -46085954 - B1_Mur2 SINE Alu -7 142 6 7 1420 202 327 45 9 chr4 109544540 109544651 -46085469 + MIRb SINE MIR 94 208 -60 7 1420 230 254 0 0 chr4 109544680 109544743 -46085377 + L1M2 LINE L1 4750 4812 -1331 7 1420 411 353 28 35 chr4 109544767 109544908 -46085212 + RSINE1 SINE B4 4 143 -22 7 1420 537 278 37 0 chr4 109544974 109545165 -46084955 + L1M2 LINE L1 4828 5025 -1118 7 1420 205 304 14 14 chr4 109546261 109546331 -46083789 - L4 LINE RTE -495 1534 1465 7 1420 2406 94 26 3 chr4 109547529 109547881 -46082239 + L1_Mus3 LINE L1 6265 6624 -14 7 1420 387 0 0 0 chr4 109547903 109547946 -46082174 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 8 1420 830 136 0 36 chr4 109548041 109548178 -46081942 - B1_Mur3 SINE Alu -14 135 4 8 1420 34 0 0 0 chr4 109548395 109548429 -46081691 + AT_rich Low_complexity Low_complexity 1 34 0 8 1420 23 0 0 0 chr4 109549169 109549192 -46080928 + AT_rich Low_complexity Low_complexity 1 23 0 8 1420 827 236 105 0 chr4 109549286 109549477 -46080643 + B3 SINE B2 2 212 -4 8 1420 297 0 0 0 chr4 109549919 109549952 -46080168 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1420 456 317 112 30 chr4 109549981 109550319 -46079801 - Lx9 LINE L1 -187 7457 7092 8 1420 1387 306 60 16 chr4 109550320 109550834 -46079286 - Lx9 LINE L1 -690 6954 6418 8 1420 1883 210 27 35 chr4 109550889 109551368 -46078752 + L1_Rod LINE L1 5351 5825 -22 8 1420 251 333 0 0 chr4 109551446 109551515 -46078605 + L2a LINE L2 3103 3171 -255 8 1420 216 0 0 0 chr4 109552056 109552080 -46078040 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 8 1420 642 289 97 15 chr4 109552570 109552837 -46077283 - B4A SINE B4 -2 290 2 9 1420 408 325 20 7 chr4 109552964 109553116 -46077004 + RSINE1 SINE B4 12 165 0 9 1420 397 248 57 0 chr4 109553433 109553538 -46076582 + PB1D10 SINE Alu 1 111 -6 9 1420 235 311 116 54 chr4 109553751 109553880 -46076240 - B4A SINE B4 -151 141 5 9 1420 1101 76 0 0 chr4 109554149 109554294 -46075826 - B1_Mus2 SINE Alu 0 147 3 9 1420 226 341 7 22 chr4 109554399 109554534 -46075586 + CT-rich Low_complexity Low_complexity 2 134 0 9 1420 186 133 0 0 chr4 109556866 109556896 -46073224 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1420 309 109 0 0 chr4 109556896 109556942 -46073178 + (CGAA)n Simple_repeat Simple_repeat 2 47 0 9 1420 600 249 254 51 chr4 109557439 109557976 -46072144 + Charlie1a DNA MER1_type 109 754 -701 9 1420 1599 139 72 59 chr4 109557958 109558332 -46071788 - RMER17C LTR ERVK -31 379 1 9 1420 21 36 0 0 chr4 109558344 109558372 -46071748 + AT_rich Low_complexity Low_complexity 1 28 0 1 1420 449 283 21 14 chr4 109558394 109558534 -46071586 + Charlie1a DNA MER1_type 731 871 -584 9 1420 298 284 133 22 chr4 109558542 109558632 -46071488 + PB1 SINE Alu 3 102 -25 1 1420 729 285 94 31 chr4 109558661 109559012 -46071108 + Charlie1a DNA MER1_type 885 1257 -198 9 1420 1311 45 0 0 chr4 109559036 109559191 -46070929 + L1Md_F2 LINE L1 5432 5586 -297 1 1420 8170 32 10 12 chr4 109559192 109560189 -46069931 + L1Md_F2 LINE L1 5588 6582 0 1 1420 337 261 21 52 chr4 109560301 109560398 -46069722 - RSINE1 SINE B4 -69 96 3 1 1420 870 251 180 39 chr4 109560437 109560748 -46069372 + ORR1D2 LTR MaLR 1 355 -15 1 1420 290 287 45 11 chr4 109560749 109560837 -46069283 + Charlie1a DNA MER1_type 1361 1451 -4 9 1420 907 280 118 7 chr4 109560999 109561269 -46068851 - ORR1D2 LTR MaLR -69 301 2 1 1420 1029 250 0 31 chr4 109561489 109561678 -46068442 - B3 SINE B2 0 216 34 1 1420 2318 150 37 3 chr4 109561678 109562059 -46068061 - ORR1B1 LTR MaLR 0 394 1 1 1420 1029 250 0 31 chr4 109562059 109562092 -46068028 - B3 SINE B2 -183 33 1 1 1420 192 281 15 59 chr4 109562094 109562162 -46067958 - L2a LINE L2 0 3426 3362 1 1420 352 378 78 22 chr4 109562958 109563188 -46066932 + MIRb SINE MIR 18 260 -8 1 1420 783 200 14 0 chr4 109563880 109564025 -46066095 - B1_Mus1 SINE Alu 0 148 2 1 1420 3594 111 142 35 chr4 109564043 109564726 -46065394 - RMER6A LTR ERVK 0 756 1 1 1420 1351 170 9 0 chr4 109564878 109565096 -46065024 + URR1B DNA MER1_type 1 220 -5 1 1420 227 226 56 19 chr4 109565199 109565253 -46064867 - MIRc SINE MIR -130 138 83 1 1420 3512 64 0 9 chr4 109565413 109565868 -46064252 - L1_Mus2 LINE L1 0 6566 6116 1 1420 180 0 0 0 chr4 109566070 109566090 -46064030 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1420 615 220 35 7 chr4 109566137 109566279 -46063841 - B1_Mur3 SINE Alu -1 148 3 1 1420 385 296 103 89 chr4 109566830 109567027 -46063093 - B4 SINE B4 -4 288 96 1 1420 1928 143 25 39 chr4 109567027 109567390 -46062730 - RLTR15 LTR ERVK -1 358 1 1 1420 385 296 103 89 chr4 109567390 109567474 -46062646 - B4 SINE B4 -197 95 3 1 1420 3133 191 57 89 chr4 109567534 109567771 -46062349 - Lx7 LINE L1 -22 7674 7425 1 1420 672 71 0 0 chr4 109567771 109567870 -46062250 + (GA)n Simple_repeat Simple_repeat 1 99 0 1 1420 3133 191 57 89 chr4 109567870 109567918 -46062202 - Lx7 LINE L1 -272 7424 7370 1 1420 1237 27 7 0 chr4 109567918 109568064 -46062056 + B1_Mus1 SINE Alu 2 148 0 1 1420 3133 191 57 89 chr4 109568064 109568584 -46061536 - Lx7 LINE L1 -327 7369 6897 1 1420 590 228 40 0 chr4 109568594 109568743 -46061377 - L1_Mur3 LINE L1 -6527 1185 1031 1 1420 296 24 24 0 chr4 109568750 109568791 -46061329 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 1 1420 351 0 0 0 chr4 109568791 109568830 -46061290 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1420 984 75 89 0 chr4 109568830 109568976 -46061144 - B2_Mm1a SINE B2 -33 160 2 1 1420 1104 232 35 26 chr4 109568978 109569323 -46060797 - L1_Mur3 LINE L1 -6669 1043 696 1 1420 861 213 76 45 chr4 109569331 109569661 -46060459 - RLTR15 LTR ERVK -19 340 1 1 1420 325 262 262 0 chr4 109569661 109569806 -46060314 - L1_Mur3 LINE L1 -7009 703 521 1 1420 2446 324 103 66 chr4 109570762 109571976 -46058144 + MTE-int LTR MaLR 3 1282 -298 1 1420 477 0 0 0 chr4 109571976 109572029 -46058091 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1420 2446 324 103 66 chr4 109572029 109572245 -46057875 + MTE-int LTR MaLR 1283 1487 -93 1 1420 307 329 70 14 chr4 109572251 109572393 -46057727 + L1M2 LINE L1 4796 4945 -1198 1 1420 245 254 109 24 chr4 109572429 109572568 -46057552 + L1M2 LINE L1 4994 5146 -1000 1 1420 467 291 70 108 chr4 109572591 109572891 -46057229 - MTE2a LTR MaLR -81 338 7 1 1420 231 250 45 30 chr4 109573144 109573210 -46056910 - PB1 SINE Alu -60 67 1 1 1420 246 314 100 21 chr4 109573227 109573367 -46056753 - MIRb SINE MIR -31 237 87 1 1420 287 25 0 24 chr4 109574166 109574207 -46055913 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1420 1226 47 0 0 chr4 109574208 109574356 -46055764 - B1_Mus1 SINE Alu 0 148 1 1 1420 364 206 17 108 chr4 109574408 109574528 -46055592 - B3A SINE B2 0 198 90 1 1420 294 29 0 0 chr4 109574716 109574751 -46055369 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1 1420 381 229 10 50 chr4 109574827 109574928 -46055192 + PB1D10 SINE Alu 19 115 -2 1 1420 311 264 123 83 chr4 109575158 109575178 -46054942 - B4 SINE B4 -47 245 167 1 1420 453 184 120 26 chr4 109575178 109575295 -46054825 - B1_Mur1 SINE Alu -6 143 16 1 1420 311 264 123 83 chr4 109575295 109575314 -46054806 - B4 SINE B4 -47 166 80 1 1420 318 244 49 0 chr4 109575702 109575784 -46054336 + L1ME1 LINE L1 6066 6151 -28 1 177 215 302 90 37 chr4 109576128 109576262 -46053858 + MIRb SINE MIR 128 268 0 1 1421 460 253 168 35 chr4 109576520 109576717 -46053403 - ID_B1 SINE B4 0 224 2 1 1421 718 261 46 0 chr4 109577503 109577656 -46052464 - B3 SINE B2 -56 160 1 1 1421 917 245 34 5 chr4 109577675 109577880 -46052240 - B3 SINE B2 -5 211 1 1 1421 223 290 14 0 chr4 109577898 109577967 -46052153 + MIR SINE MIR 155 224 -38 1 1421 307 27 0 0 chr4 109578437 109578474 -46051646 - L1Md_T LINE L1 -527 6055 6019 1 1421 5499 25 0 13 chr4 109578449 109579349 -46050771 - L1Md_T LINE L1 -324 6258 5370 1 1421 4567 35 0 2 chr4 109579349 109579890 -46050230 + L1Md_T LINE L1 6043 6582 0 1 1421 471 329 101 6 chr4 109581189 109581357 -46048763 - B4A SINE B4 0 292 109 1 1421 540 0 0 0 chr4 109581384 109581444 -46048676 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1 1421 410 270 212 33 chr4 109581833 109582017 -46048103 + MIRc SINE MIR 44 260 -8 1 1421 324 0 0 0 chr4 109582781 109582817 -46047303 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 1 1421 3807 287 37 55 chr4 109582828 109584176 -46045944 - Lx8 LINE L1 -20 7453 6130 1 1421 676 263 127 45 chr4 109584391 109584619 -46045501 - Lx7 LINE L1 -5 7691 7449 1 1421 483 18 0 0 chr4 109584619 109584675 -46045445 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1421 676 263 127 45 chr4 109584675 109584975 -46045145 - Lx7 LINE L1 -248 7448 7120 1 1421 26 50 0 0 chr4 109585039 109585079 -46045041 + AT_rich Low_complexity Low_complexity 1 40 0 1 1421 1156 55 14 0 chr4 109585371 109585516 -46044604 + B1_Mus1 SINE Alu 2 148 0 1 1421 5157 77 75 56 chr4 109586251 109586458 -46043662 - L1VL2 LINE L1 -1789 1826 1614 1 1421 1478 6 0 0 chr4 109586458 109586630 -46043490 + L1Md_A LINE L1 6411 6582 0 1 1421 5157 77 75 56 chr4 109586630 109586865 -46043255 - L1VL2 LINE L1 -2002 1613 1371 1 1421 207 0 0 0 chr4 109586865 109586888 -46043232 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1421 5157 75 98 114 chr4 109586888 109587473 -46042647 - L1VL2 LINE L1 -2245 1370 825 1 1421 2554 59 0 0 chr4 109587473 109587793 -46042327 - L1_Mus1 LINE L1 0 6567 6248 1 1421 3996 73 127 187 chr4 109587793 109588473 -46041647 - L1VL2 LINE L1 -5511 824 162 1 1421 1357 252 13 14 chr4 109588750 109589181 -46040939 - Lx8 LINE L1 -1659 5985 5520 1 1421 423 0 0 0 chr4 109589188 109589235 -46040885 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1421 349 311 25 0 chr4 109589235 109589354 -46040766 + L1_Mur3 LINE L1 5396 5517 -363 1 1421 753 261 25 35 chr4 109589456 109589655 -46040465 + B3 SINE B2 1 197 -19 1 1421 338 280 124 59 chr4 109589720 109590043 -46040077 - L1ME1 LINE L1 -63 6116 5773 1 1421 353 309 9 0 chr4 109591245 109591355 -46038765 - PB1D10 SINE Alu -6 111 1 1 1421 1088 271 65 14 chr4 109591519 109591949 -46038171 - L1ME1 LINE L1 -420 5759 5308 1 1421 233 0 62 0 chr4 109591950 109591982 -46038138 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1421 291 214 19 37 chr4 109591982 109592080 -46038040 - L1MD LINE L1 -863 5283 5188 1 1421 1722 142 136 20 chr4 109592116 109592469 -46037651 - ORR1B1 LTR MaLR 0 394 1 1 1421 407 310 172 12 chr4 109592509 109593025 -46037095 - L1ME1 LINE L1 -1015 5131 4533 1 1421 390 188 28 28 chr4 109593132 109593203 -46036917 - B1_Mm SINE Alu -10 137 67 1 1421 424 264 144 10 chr4 109593206 109593505 -46036615 - L1ME1 LINE L1 -1656 4490 4152 1 1421 276 30 0 0 chr4 109593598 109593631 -46036489 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1421 728 189 0 3 chr4 109593870 109594160 -46035960 + CT-rich Low_complexity Low_complexity 1 289 0 1 1421 531 219 17 34 chr4 109594190 109594308 -46035812 - PB1D9 SINE Alu -1 119 4 1 1421 423 257 35 9 chr4 109594309 109594423 -46035697 - PB1D10 SINE Alu 0 117 1 1 1421 604 280 5 98 chr4 109594423 109594518 -46035602 - ID SINE ID -146 78 2 1 1421 199 292 15 15 chr4 109595218 109595284 -46034836 - MIR3 SINE MIR -129 79 14 1 1421 339 140 0 0 chr4 109595651 109595701 -46034419 + B1F SINE Alu 93 142 -7 1 1421 195 42 0 0 chr4 109595708 109595732 -46034388 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 1 1421 251 247 70 30 chr4 109595734 109595834 -46034286 + L1M4 LINE L1 5147 5250 -896 1 1421 473 276 119 72 chr4 109595882 109596175 -46033945 + L1MB3 LINE L1 5692 5998 -185 1 1421 2252 244 64 4 chr4 109596274 109596821 -46033299 - Lx9 LINE L1 -624 7020 6441 1 1421 1218 252 89 8 chr4 109596864 109597259 -46032861 + Lx9 LINE L1 7067 7493 -151 1 1421 714 203 8 0 chr4 109597272 109597400 -46032720 + B3 SINE B2 2 130 -86 1 1421 570 155 15 15 chr4 109597484 109597615 -46032505 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 1 1421 478 269 82 30 chr4 109598055 109598189 -46031931 - ID_B1 SINE B4 -16 208 68 1 1421 24 53 0 0 chr4 109598428 109598466 -46031654 + AT_rich Low_complexity Low_complexity 1 38 0 1 1421 242 29 0 28 chr4 109598711 109598747 -46031373 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1421 591 15 0 0 chr4 109599378 109599446 -46030674 + (TGG)n Simple_repeat Simple_repeat 1 68 0 1 1421 195 129 0 0 chr4 109599499 109599530 -46030590 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1421 699 261 18 30 chr4 109600215 109600381 -46029739 + RSINE1 SINE B4 2 165 0 1 1421 497 219 114 30 chr4 109600544 109600676 -46029444 - B1F2 SINE Alu -1 148 6 1 1421 408 209 404 51 chr4 109600744 109600900 -46029220 + B3 SINE B2 5 215 -1 1 1421 1064 72 22 0 chr4 109601402 109601541 -46028579 + B1_Mm SINE Alu 1 142 -5 1 1421 1019 122 7 0 chr4 109602208 109602356 -46027764 + B1_Mur4 SINE Alu 2 150 0 1 1421 447 253 31 99 chr4 109602218 109602380 -46027740 + B4A SINE B4 96 246 -46 1 1421 444 308 88 51 chr4 109602440 109602734 -46027386 + L2a LINE L2 2395 2699 -720 1 1421 358 227 2 13 chr4 109603015 109603106 -46027014 + L1MD LINE L1 5037 5127 -1019 1 1421 887 250 0 15 chr4 109603111 109603306 -46026814 + B3A SINE B2 1 192 -6 1 1421 232 235 20 0 chr4 109603373 109603424 -46026696 + ID SINE ID 6 57 -167 1 1421 405 0 0 0 chr4 109603425 109603470 -46026650 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1421 432 0 0 0 chr4 109603470 109603517 -46026603 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1421 251 299 165 58 chr4 109603555 109603743 -46026377 + L2a LINE L2 2869 3076 -343 1 1421 243 378 8 23 chr4 109603887 109604017 -46026103 + L2a LINE L2 3298 3425 -1 1 1421 1062 88 7 13 chr4 109604166 109604316 -46025804 - B1_Mur4 SINE Alu -1 149 1 2 1421 274 250 45 45 chr4 109605181 109605195 -46024925 - B3A SINE B2 -104 94 12 2 1421 352 275 0 0 chr4 109605195 109605264 -46024856 - ID4 SINE ID -5 78 10 2 1421 734 244 0 29 chr4 109605393 109605532 -46024588 - RSINE1 SINE B4 -28 137 3 2 1421 254 255 85 0 chr4 109605627 109605733 -46024387 + L1ME3A LINE L1 6053 6167 -6 2 1421 659 52 144 0 chr4 109605848 109605945 -46024175 - B1_Mm SINE Alu 0 147 37 2 1421 316 159 16 16 chr4 109605892 109605956 -46024164 - 4.5SRNA scRNA scRNA -8 86 23 2 1421 9800 76 7 7 chr4 109605956 109607912 -46022208 - L1_Mus1 LINE L1 -43 6524 4568 2 1421 265 334 191 32 chr4 109608967 109609338 -46020782 + L3 LINE CR1 3833 4262 -227 2 1421 348 194 41 14 chr4 109609339 109609412 -46020708 - Lx8 LINE L1 -570 6903 6829 2 1421 231 146 42 0 chr4 109609576 109609624 -46020496 + L3 LINE CR1 4248 4297 -192 2 1421 732 245 0 7 chr4 109609684 109609832 -46020288 + B1_Mus1 SINE Alu 2 148 0 2 1421 714 189 0 23 chr4 109610333 109610463 -46019657 - B1_Mur2 SINE Alu -22 127 1 2 1421 344 233 16 156 chr4 109610356 109610478 -46019642 - MT2B LTR ERVL -344 257 153 2 1421 728 196 171 11 chr4 109610509 109610690 -46019430 - B3 SINE B2 -4 212 3 2 1421 220 326 0 36 chr4 109612531 109612668 -46017452 + CT-rich Low_complexity Low_complexity 3 134 0 2 1421 1341 264 106 39 chr4 109612989 109613509 -46016611 - MER57A-int LTR ERV1 -166 6021 5467 2 1421 470 183 9 2 chr4 109613520 109613619 -46016501 + MTD LTR MaLR 278 419 0 2 1421 416 236 34 17 chr4 109613753 109613894 -46016226 - MER57A-int LTR ERV1 -2591 3596 3483 2 1421 988 208 70 25 chr4 109614050 109614366 -46015754 - MER57A-int LTR ERV1 -2167 3189 2860 2 1421 248 127 0 31 chr4 109614423 109614488 -46015632 + T-rich Low_complexity Low_complexity 1 63 0 2 1421 641 116 32 0 chr4 109614489 109614584 -46015536 - B1_Mur4 SINE Alu 0 150 53 2 1421 254 282 0 90 chr4 109614528 109614606 -46015514 - MT2B LTR ERVL -341 260 190 2 1421 440 270 37 12 chr4 109614961 109615087 -46015033 - B1F1 SINE Alu -111 200 11 2 1421 367 135 0 73 chr4 109615126 109615222 -46014898 + L1Md_F3 LINE L1 6496 6584 0 2 1421 680 35 0 11 chr4 109615256 109615344 -46014776 + (TTTCC)n Simple_repeat Simple_repeat 3 89 0 2 1421 904 162 7 20 chr4 109615361 109615512 -46014608 - B1_Mur4 SINE Alu 0 150 2 2 1421 550 195 21 221 chr4 109615563 109615708 -46014412 - MTD LTR MaLR -269 150 5 2 1421 263 306 54 46 chr4 109615703 109615833 -46014287 + RMER30 DNA MER1_type 47 177 -25 2 1421 1163 233 128 38 chr4 109616054 109616500 -46013620 - L1MA6 LINE L1 -117 6183 5698 2 1421 308 109 5 0 chr4 109616494 109616548 -46013572 - L1MA6 LINE L1 -724 5567 5513 2 1421 753 182 76 0 chr4 109616630 109616762 -46013358 - B1_Mur1 SINE Alu -7 142 1 2 1421 70 71 0 0 chr4 109616921 109617061 -46013059 + AT_rich Low_complexity Low_complexity 1 140 0 2 1421 454 240 72 62 chr4 109617206 109617415 -46012705 - L1MA7 LINE L1 -82 6209 5999 2 1421 194 356 94 41 chr4 109617559 109617729 -46012391 + MIRc SINE MIR 75 253 -15 2 1421 240 296 113 0 chr4 109617811 109617882 -46012238 - MIRb SINE MIR -10 258 180 2 1421 309 252 64 32 chr4 109617956 109618068 -46012052 - MIRc SINE MIR -113 155 37 2 1421 185 368 21 21 chr4 109618272 109618369 -46011751 + MIRm SINE MIR 59 155 -121 2 1421 237 33 0 0 chr4 109620118 109620148 -46009972 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1421 23 0 0 0 chr4 109620602 109620625 -46009495 + AT_rich Low_complexity Low_complexity 1 23 0 2 1421 767 322 73 22 chr4 109620697 109620970 -46009150 - MER68 LTR ERVL 0 563 277 2 1421 461 259 106 30 chr4 109621004 109621203 -46008917 - MER68-int LTR ERVL -2776 214 1 2 1421 187 286 129 0 chr4 109621511 109621581 -46008539 - MIR SINE MIR 0 262 184 2 1421 853 153 13 46 chr4 109623026 109623177 -46006943 + B1_Mur4 SINE Alu 5 150 0 2 1421 240 310 76 17 chr4 109623641 109623759 -46006361 + MIR3 SINE MIR 83 207 -1 2 1421 222 322 45 83 chr4 109624445 109624577 -46005543 - L2c LINE L2 -3 3384 3258 2 1421 302 329 41 30 chr4 109624978 109625147 -46004973 - L2c LINE L2 -244 3143 2973 2 1421 200 258 39 81 chr4 109626338 109626425 -46003695 - MIRb SINE MIR -85 183 95 2 1421 1794 228 14 97 chr4 109626939 109627422 -46002698 + RMER19C LTR ERVK 138 582 -29 2 1421 971 68 113 0 chr4 109627422 109627555 -46002565 + B1_Mus1 SINE Alu 1 148 0 2 1421 1794 228 14 97 chr4 109627555 109627586 -46002534 + RMER19C LTR ERVK 583 609 -2 2 1421 1369 91 16 11 chr4 109627586 109627774 -46002346 + B2_Mm2 SINE B2 1 189 -6 2 1421 233 339 62 39 chr4 109628444 109628573 -46001547 + MIR3 SINE MIR 68 199 -9 2 1421 302 345 102 0 chr4 109629252 109629429 -46000691 + MIR SINE MIR 66 260 -2 2 1421 183 205 0 71 chr4 109629663 109629705 -46000415 + L2b LINE L2 3326 3364 -11 2 1421 630 270 115 11 chr4 109630260 109630451 -45999669 + Lx8 LINE L1 6403 6613 -860 2 1421 544 314 166 16 chr4 109630465 109630905 -45999215 + Lx8 LINE L1 6950 7467 -6 2 1421 319 213 13 0 chr4 109630951 109631026 -45999094 - L1MA6 LINE L1 -159 6141 6066 2 1421 225 182 71 18 chr4 109631120 109631176 -45998944 + MIRb SINE MIR 107 165 -103 2 1421 374 191 15 0 chr4 109631370 109631438 -45998682 + B1_Mur2 SINE Alu 35 103 -46 2 1421 478 279 45 0 chr4 109631438 109631549 -45998571 + MIRb SINE MIR 80 195 -73 2 1421 1130 83 0 14 chr4 109631552 109631699 -45998421 + B1_Mus2 SINE Alu 2 146 -1 2 1421 945 102 135 62 chr4 109631759 109631900 -45998220 + B2_Mm1a SINE B2 1 160 -33 2 1421 495 0 0 0 chr4 109631900 109631955 -45998165 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 2 1421 186 43 0 0 chr4 109631962 109631985 -45998135 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 1421 945 102 135 62 chr4 109631985 109632013 -45998107 + B2_Mm1a SINE B2 161 191 -2 2 1421 432 0 0 0 chr4 109632328 109632376 -45997744 + (CTCA)n Simple_repeat Simple_repeat 4 51 0 2 1421 463 194 40 20 chr4 109632398 109632498 -45997622 - PB1D9 SINE Alu -18 102 1 2 1421 210 193 158 0 chr4 109633548 109633605 -45996515 - MIRb SINE MIR -36 232 167 2 1421 234 0 0 0 chr4 109633873 109633899 -45996221 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1421 357 24 0 0 chr4 109633901 109633943 -45996177 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1421 288 0 0 0 chr4 109635121 109635153 -45994967 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1421 204 40 0 0 chr4 109635383 109635408 -45994712 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1421 376 286 48 27 chr4 109635412 109635534 -45994586 - PB1D9 SINE Alu -21 128 2 2 1421 225 258 141 33 chr4 109637603 109637695 -45992425 - MIRc SINE MIR -143 125 24 2 1421 264 337 41 0 chr4 109637740 109637838 -45992282 + Charlie24 DNA MER1_type 2347 2448 -2 2 1421 549 170 75 0 chr4 109638078 109638184 -45991936 - PB1D9 SINE Alu -6 114 1 2 1421 530 305 37 21 chr4 109638323 109638514 -45991606 + MIR SINE MIR 32 225 -37 2 1421 377 96 19 0 chr4 109639563 109639615 -45990505 - ORR1A2 LTR MaLR -2 324 272 2 1421 342 67 0 0 chr4 109639615 109639660 -45990460 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1421 1220 55 0 0 chr4 109639660 109639806 -45990314 - B1_Mm SINE Alu 0 147 2 2 1421 604 60 48 0 chr4 109639806 109639890 -45990230 - ORR1A2 LTR MaLR -41 285 198 2 1421 1210 106 43 0 chr4 109640004 109640192 -45989928 - ORR1A2 LTR MaLR -131 196 1 2 1421 255 300 25 0 chr4 109640545 109640625 -45989495 - MIR SINE MIR -72 190 109 2 1421 273 286 59 43 chr4 109641016 109641180 -45988940 - MIR SINE MIR -42 166 3 2 1421 231 331 43 81 chr4 109641180 109641307 -45988813 + L2b LINE L2 3143 3263 -112 2 1421 264 288 0 0 chr4 109642111 109642170 -45987950 - MIR SINE MIR -62 146 88 2 1421 479 243 127 130 chr4 109642835 109643204 -45986916 - ORR1D2 LTR MaLR -2 368 1 2 1421 219 36 0 0 chr4 109644512 109644540 -45985580 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1421 891 110 0 52 chr4 109644623 109644757 -45985363 + B1_Mus1 SINE Alu 2 128 -20 2 1421 251 340 83 59 chr4 109644674 109644843 -45985277 + RLTR25A LTR ERVK 521 693 -410 2 1421 333 0 0 0 chr4 109645593 109645630 -45984490 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1421 233 227 159 0 chr4 109645650 109645738 -45984382 + L1M5 LINE L1 5632 5733 -391 2 1421 189 107 0 0 chr4 109648028 109648056 -45982064 + (TGG)n Simple_repeat Simple_repeat 3 30 0 2 1421 701 100 43 58 chr4 109648417 109648555 -45981565 + B1_Mur3 SINE Alu 1 136 -13 2 1421 183 80 0 0 chr4 109648568 109648593 -45981527 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1421 285 300 0 0 chr4 109652503 109652583 -45977537 + (CGG)n Simple_repeat Simple_repeat 3 82 0 2 1421 24 32 0 0 chr4 109654556 109654587 -45975533 + GC_rich Low_complexity Low_complexity 1 31 0 2 1421 188 122 24 0 chr4 109655864 109655905 -45974215 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1421 181 263 0 0 chr4 109658356 109658394 -45971726 - L2b LINE L2 -22 3353 3316 2 1421 549 318 142 37 chr4 109660060 109660463 -45969657 - MLT1H1 LTR MaLR -11 544 132 2 1421 273 29 0 0 chr4 109661012 109661046 -45969074 + (G)n Simple_repeat Simple_repeat 1 34 0 2 1421 781 148 15 7 chr4 109661707 109661843 -45968277 - B1_Mus2 SINE Alu 0 147 11 2 1421 531 15 0 0 chr4 109661850 109661916 -45968204 + B1_Mm SINE Alu 82 147 0 2 1421 606 228 151 5 chr4 109661933 109662118 -45968002 - B3 SINE B2 0 216 5 2 1421 322 280 11 0 chr4 109662120 109662254 -45967866 - L1M2 LINE L1 -855 5442 5301 2 1421 332 198 13 0 chr4 109662272 109662351 -45967769 - L1M2 LINE L1 -1520 4620 4515 2 1421 236 100 0 0 chr4 109662368 109662408 -45967712 + B1_Mus2 SINE Alu 99 138 -9 2 1421 202 89 67 0 chr4 109662426 109662471 -45967649 + T-rich Low_complexity Low_complexity 2 49 0 2 1421 284 261 126 32 chr4 109662490 109662585 -45967535 - L1MD LINE L1 -1968 4178 4075 2 1421 2220 278 66 34 chr4 109662602 109663678 -45966442 - L1M2 LINE L1 -2168 3975 2866 2 1421 265 284 0 58 chr4 109663678 109663764 -45966356 + ID2 SINE ID 3 83 0 2 1421 264 284 46 56 chr4 109663764 109663786 -45966334 + ID_B1 SINE B4 3 109 -115 3 1421 770 87 0 17 chr4 109663871 109663988 -45966132 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 3 1421 274 310 47 39 chr4 109663996 109664156 -45965964 - L1_Rod LINE L1 -3388 2758 2591 3 1421 1134 197 39 0 chr4 109664156 109664364 -45965756 - B3 SINE B2 0 216 1 3 1421 274 349 62 31 chr4 109664364 109664439 -45965681 - L1_Rod LINE L1 -3257 2590 2502 3 1421 204 40 0 0 chr4 109664439 109664464 -45965656 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1421 274 349 62 31 chr4 109664464 109664601 -45965519 - L1_Rod LINE L1 -3346 2501 2369 3 1421 1152 88 51 23 chr4 109664607 109664782 -45965338 - B2_Mm2 SINE B2 -1 194 15 3 1421 336 267 105 0 chr4 109664802 109664888 -45965232 - MTE2b LTR MaLR -52 327 233 3 1421 422 226 53 70 chr4 109664900 109665014 -45965106 - MTE2b LTR MaLR -191 188 77 3 1421 306 289 8 109 chr4 109665594 109665722 -45964398 - L1MEg LINE L1 -4672 1412 1298 3 1421 500 248 14 62 chr4 109665728 109665919 -45964201 - MTD-int LTR MaLR -808 450 247 3 1421 283 243 0 67 chr4 109665922 109665997 -45964123 + B1_Mur2 SINE Alu 71 140 -9 3 1421 225 200 71 48 chr4 109666037 109666121 -45963999 - Lx8 LINE L1 -29 7444 7359 3 1421 2035 260 39 14 chr4 109666224 109666786 -45963334 - Lx7 LINE L1 -329 7367 6792 3 1421 576 279 30 6 chr4 109666783 109666949 -45963171 + Lx7 LINE L1 6343 6512 -1184 3 1421 2896 273 69 21 chr4 109666950 109667132 -45962988 - Lx7 LINE L1 -914 6782 6605 3 1421 3143 145 50 9 chr4 109667132 109667443 -45962677 - RLTR12A LTR ERVK 0 568 256 3 1421 485 32 16 0 chr4 109667443 109667506 -45962614 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1421 3143 145 50 9 chr4 109667506 109667737 -45962383 - RLTR12A LTR ERVK -313 255 6 3 1421 2896 273 69 21 chr4 109667737 109668456 -45961664 - Lx7 LINE L1 -1092 6604 5838 3 1421 695 278 56 78 chr4 109668461 109668730 -45961390 - MTD-int LTR MaLR -995 263 1 3 1421 1824 214 44 16 chr4 109668735 109669119 -45961001 - MTD LTR MaLR -5 414 20 3 1421 194 0 39 0 chr4 109671966 109671992 -45958128 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1421 683 224 7 20 chr4 109672050 109672200 -45957920 + B1_Mur1 SINE Alu 2 149 0 3 1421 438 244 67 22 chr4 109672253 109672387 -45957733 + B3 SINE B2 76 215 -1 3 1421 244 346 0 0 chr4 109672399 109672477 -45957643 + ID4 SINE ID 3 80 -3 3 1421 4552 191 38 57 chr4 109672702 109673621 -45956499 + RMER19B LTR ERVK 1 902 0 3 1421 293 250 59 0 chr4 109673705 109673773 -45956347 + MT2B LTR ERVL 169 240 -361 3 1421 592 219 17 9 chr4 109673719 109673778 -45956342 + B1_Mus2 SINE Alu 30 90 -57 3 1421 938 138 6 0 chr4 109673778 109673938 -45956182 + (GA)n Simple_repeat Simple_repeat 1 161 0 3 1421 592 219 17 9 chr4 109673938 109673993 -45956127 + B1_Mus2 SINE Alu 91 144 -3 3 1421 771 253 217 22 chr4 109674045 109674311 -45955809 - MTD LTR MaLR -15 404 87 3 1421 1524 202 11 240 chr4 109674311 109674643 -45955477 + RMER19C LTR ERVK 1 465 -437 3 1421 4325 52 13 16 chr4 109674643 109675187 -45954933 - L1_Mus2 LINE L1 0 6566 6025 3 1421 1647 228 13 83 chr4 109675187 109675664 -45954456 + RMER19C LTR ERVK 232 902 0 3 1421 327 331 8 16 chr4 109675917 109676040 -45954080 + L1MA4A LINE L1 5794 5915 -388 3 1421 1164 77 0 0 chr4 109676280 109676423 -45953697 - B1_Mus1 SINE Alu -5 143 1 3 1421 230 296 24 36 chr4 109676693 109676777 -45953343 - ID4_ SINE ID 0 83 1 3 1421 625 212 44 0 chr4 109676827 109676964 -45953156 - B1_Mur4 SINE Alu -5 145 3 3 1421 237 281 45 0 chr4 109676971 109677060 -45953060 + L1M3 LINE L1 4320 4412 -1728 3 1421 1477 151 39 23 chr4 109677175 109677481 -45952639 + RMER4B LTR ERVK 1 311 -274 3 1421 2116 127 62 3 chr4 109677481 109677820 -45952300 - RLTR15 LTR ERVK 0 359 1 3 1421 456 237 52 26 chr4 109677821 109677855 -45952265 - MYSERV-int LTR ERVK -2 6548 6519 3 1421 255 61 0 0 chr4 109677855 109677888 -45952232 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1421 456 237 52 26 chr4 109677888 109678044 -45952076 - MYSERV-int LTR ERVK -32 6518 6353 3 1421 1489 179 73 21 chr4 109678044 109678464 -45951656 + RLTR17 LTR ERVK 201 692 0 3 1421 4095 201 61 49 chr4 109678464 109679582 -45950538 + MYSERV16_I-int LTR ERVK 1067 2197 -129 3 1421 180 0 0 0 chr4 109679601 109679621 -45950499 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1421 991 90 90 0 chr4 109679621 109679766 -45950354 - B2_Mm2 SINE B2 -37 158 1 3 1421 454 169 11 0 chr4 109679767 109679856 -45950264 + MYSERV-int LTR ERVK 6440 6529 -21 3 1421 2429 159 69 26 chr4 109679876 109680381 -45949739 + RLTR11A2 LTR ERVK 1 527 0 3 1421 719 157 0 8 chr4 109680386 109680508 -45949612 + RMER4B LTR ERVK 465 585 0 3 1421 1403 249 130 38 chr4 109680508 109681246 -45948874 + L1M3 LINE L1 4493 5298 -842 3 1421 2879 22 0 0 chr4 109681270 109681593 -45948527 - L1_Mus1 LINE L1 -658 5909 5587 3 1421 2579 123 63 0 chr4 109681596 109682047 -45948073 + L1_Mus3 LINE L1 6113 6648 -6 3 1421 929 265 166 52 chr4 109682026 109682491 -45947629 + L1M3 LINE L1 5296 5813 -358 3 1421 33472 87 9 8 chr4 109682503 109688591 -45941529 - L1_Mus1 LINE L1 0 6567 476 3 1421 238 308 80 29 chr4 109690185 109690322 -45939798 - LTR16C LTR ERVL 0 489 346 3 1421 2335 29 7 7 chr4 109691235 109691516 -45938604 - L1Md_F3 LINE L1 -1 6583 6303 3 1421 283 224 0 0 chr4 109691690 109691739 -45938381 - ID4_ SINE ID -33 50 2 3 1421 360 0 0 0 chr4 109692166 109692206 -45937914 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1421 285 318 195 7 chr4 109692715 109692864 -45937256 + MLT1C LTR MaLR 291 467 0 3 1421 267 357 61 35 chr4 109694471 109694634 -45935486 + MIRc SINE MIR 15 186 -82 3 1421 224 213 76 25 chr4 109694713 109694789 -45935331 - MIRc SINE MIR -34 228 158 3 1421 575 233 74 2 chr4 109695799 109695973 -45934147 - L1MA9 LINE L1 0 6334 5989 3 1421 22 0 0 0 chr4 109696251 109696273 -45933847 + GC_rich Low_complexity Low_complexity 1 22 0 3 1421 243 0 0 0 chr4 109696375 109696402 -45933718 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1421 351 233 124 19 chr4 109696796 109696901 -45933219 - PB1D9 SINE Alu -2 118 3 3 1421 298 264 65 21 chr4 109696820 109696913 -45933207 - MT2B LTR ERVL -354 247 151 3 1421 315 0 0 0 chr4 109697023 109697058 -45933062 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1421 340 296 164 28 chr4 109697081 109697331 -45932789 - B4A SINE B4 -8 284 1 3 1421 489 320 67 20 chr4 109697360 109697657 -45932463 - L1MC4 LINE L1 -440 7602 7292 3 1421 374 316 155 0 chr4 109697732 109698029 -45932091 - L1MC4 LINE L1 -905 7137 6795 3 1421 353 261 0 22 chr4 109698310 109698400 -45931720 - MTEb LTR MaLR -14 365 278 3 1421 331 290 66 72 chr4 109698666 109698833 -45931287 - MER63C DNA AcHobo -336 594 429 3 1421 276 300 18 91 chr4 109698947 109699057 -45931063 + B4A SINE B4 44 145 -147 3 1421 331 342 50 19 chr4 109699071 109699232 -45930888 + B4A SINE B4 124 289 -3 3 1421 234 0 0 0 chr4 109699391 109699417 -45930703 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1421 2039 46 0 44 chr4 109699424 109699696 -45930424 - L1_Mus1 LINE L1 0 6567 6308 3 1421 559 304 131 28 chr4 109699858 109700179 -45929941 - MER63C DNA AcHobo -509 421 68 3 1421 312 27 0 0 chr4 109700359 109700396 -45929724 + (CCCCG)n Simple_repeat Simple_repeat 5 41 0 3 1421 396 0 0 0 chr4 109701592 109701636 -45928484 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1421 825 83 0 62 chr4 109701734 109701926 -45928194 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1421 391 142 0 45 chr4 109701931 109702042 -45928078 + CT-rich Low_complexity Low_complexity 2 107 0 3 1421 620 230 22 7 chr4 109702047 109702183 -45927937 - B1_Mus1 SINE Alu -6 142 5 3 1421 860 319 170 10 chr4 109702631 109703031 -45927089 + Lx8 LINE L1 6836 7299 -174 3 1421 4756 141 58 66 chr4 109703286 109704183 -45925937 - RMER19B LTR ERVK -12 890 1 3 1421 28 61 0 0 chr4 109704260 109704309 -45925811 + AT_rich Low_complexity Low_complexity 1 49 0 3 1421 228 234 0 0 chr4 109704553 109704600 -45925520 + MLT1B LTR MaLR 320 366 -24 3 1421 344 259 11 11 chr4 109704637 109704742 -45925378 - L1MC4 LINE L1 -394 7648 7537 3 1421 190 333 53 0 chr4 109705073 109705148 -45924972 - L2b LINE L2 -49 3326 3248 3 1421 308 280 47 82 chr4 109706170 109706341 -45923779 + MIR SINE MIR 74 238 -24 3 1421 231 300 78 52 chr4 109706391 109706507 -45923613 - L2b LINE L2 -54 3321 3203 3 1421 287 276 103 0 chr4 109706638 109706725 -45923395 + MLT1J1 LTR MaLR 2 97 -347 3 1421 357 274 117 4 chr4 109706729 109706871 -45923249 + MLT1J1 LTR MaLR 260 431 -17 3 1422 285 273 69 29 chr4 109707523 109707625 -45922495 + MIRb SINE MIR 118 223 -45 3 1422 470 227 79 138 chr4 109707949 109708030 -45922090 + B4 SINE B4 8 76 -216 3 1422 658 198 184 11 chr4 109708030 109708209 -45921911 + B3 SINE B2 1 210 -6 3 1422 470 227 79 138 chr4 109708209 109708316 -45921804 + B4 SINE B4 77 185 -107 3 1422 1323 109 0 5 chr4 109708437 109708622 -45921498 - B2_Mm2 SINE B2 -11 184 1 3 1422 344 237 0 106 chr4 109708678 109708763 -45921357 + B4A SINE B4 216 291 -1 3 1422 395 193 21 74 chr4 109709759 109709876 -45920244 + (GTGTG)n Simple_repeat Simple_repeat 4 115 0 3 1422 189 0 0 0 chr4 109709876 109709897 -45920223 + (TGG)n Simple_repeat Simple_repeat 3 23 0 3 1422 395 193 21 74 chr4 109709897 109709969 -45920151 + (GTGTG)n Simple_repeat Simple_repeat 2 68 0 3 1422 180 104 20 59 chr4 109709995 109710046 -45920074 + (GTGTG)n Simple_repeat Simple_repeat 1 49 0 3 1422 228 222 44 0 chr4 109710064 109710109 -45920011 - BC1_Mm scRNA scRNA -100 52 6 3 1422 508 286 42 81 chr4 109710151 109710436 -45919684 - B4A SINE B4 -18 274 1 3 1422 234 0 0 0 chr4 109710996 109711022 -45919098 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1422 4600 57 0 3 chr4 109711701 109712267 -45917853 - L1Md_F2 LINE L1 -14 6568 6005 3 1422 11848 42 5 1 chr4 109712267 109714412 -45915708 - L1Md_A LINE L1 -1 6581 4433 3 1422 3134 76 2 0 chr4 109714425 109714819 -45915301 + MTA_Mm LTR MaLR 2 396 0 3 1422 1800 64 5 0 chr4 109714828 109715048 -45915072 + L1_Mus1 LINE L1 6170 6390 -177 3 1422 402 66 16 0 chr4 109715049 109715110 -45915010 + L1_Mus1 LINE L1 6506 6567 0 3 1422 2571 151 14 5 chr4 109715240 109715654 -45914466 - MTC LTR MaLR -1 420 3 3 1422 342 0 0 0 chr4 109716164 109716202 -45913918 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1422 210 264 195 62 chr4 109716323 109716436 -45913684 + MIRc SINE MIR 114 241 -27 3 1422 1313 246 88 94 chr4 109716477 109716973 -45913147 - L1MC LINE L1 -1656 4490 4015 3 1422 976 93 58 0 chr4 109716973 109717112 -45913008 - B1_Mus2 SINE Alu 0 147 1 3 1422 1313 246 88 94 chr4 109717112 109717231 -45912889 - L1MC LINE L1 -2132 4014 3879 3 1422 1116 94 0 0 chr4 109717235 109717394 -45912726 + (TTC)n Simple_repeat Simple_repeat 2 160 0 3 1422 963 240 50 113 chr4 109717423 109717803 -45912317 + RMER13B LTR ERVK 544 899 -9 3 1422 212 300 88 0 chr4 109718078 109718158 -45911962 - MIRb SINE MIR -68 200 114 3 1422 210 326 10 10 chr4 109718347 109718446 -45911674 + G-rich Low_complexity Low_complexity 3 101 0 3 1422 678 159 53 0 chr4 109719465 109719578 -45910542 + ETnERV2-int LTR ERVK 7070 7188 -218 4 1422 8195 43 3 0 chr4 109719579 109720560 -45909560 + L1Md_F2 LINE L1 5599 6582 0 4 1422 207 0 0 0 chr4 109720586 109720609 -45909511 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1422 363 176 12 75 chr4 109721194 109721274 -45908846 - B1F1 SINE Alu 0 120 46 4 1422 301 264 53 32 chr4 109721528 109721622 -45908498 - PB1D7 SINE Alu -18 102 7 4 1422 554 263 226 53 chr4 109721742 109722043 -45908077 - Lx9 LINE L1 -289 7355 7003 4 1422 351 0 0 0 chr4 109722081 109722120 -45908000 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1422 186 368 35 35 chr4 109722767 109722908 -45907212 - MIR SINE MIR -106 156 16 4 1422 229 212 173 12 chr4 109723252 109723333 -45906787 - MLT1C LTR MaLR -85 382 289 4 1422 458 261 14 0 chr4 109724166 109724304 -45905816 - HAL1 LINE L1 -127 2380 2241 4 1422 327 292 161 29 chr4 109724793 109725036 -45905084 - HAL1 LINE L1 -1089 1418 1144 4 1422 622 216 18 140 chr4 109725303 109725524 -45904596 - B3A SINE B2 -4 194 1 4 1422 264 150 0 0 chr4 109725702 109725742 -45904378 - PB1 SINE Alu -12 115 76 4 1422 210 311 64 36 chr4 109725832 109725942 -45904178 + MIR SINE MIR 27 139 -123 4 1422 655 259 47 21 chr4 109725950 109726143 -45903977 + B3A SINE B2 1 198 0 4 1422 1157 200 0 0 chr4 109726172 109726377 -45903743 + B3 SINE B2 2 206 -10 4 1422 322 262 48 0 chr4 109726433 109726536 -45903584 - Tigger5 DNA MER2_type 0 2406 2299 4 1422 23 0 0 0 chr4 109726579 109726602 -45903518 + AT_rich Low_complexity Low_complexity 1 23 0 4 1422 215 61 0 29 chr4 109726602 109726636 -45903484 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1422 741 274 0 0 chr4 109726636 109726789 -45903331 - B3A SINE B2 -44 154 2 4 1422 3617 90 6 2 chr4 109727089 109727578 -45902542 + L1_Mus3 LINE L1 6145 6635 -3 4 1422 702 235 12 18 chr4 109727691 109727856 -45902264 + ORR1D2 LTR MaLR 1 164 -206 4 1422 35232 67 3 14 chr4 109727858 109732588 -45897532 + L1Md_F3 LINE L1 450 5083 -800 4 1422 6709 40 0 5 chr4 109732588 109733388 -45896732 + L1Md_F2 LINE L1 5776 6571 -11 4 1422 35232 48 1 8 chr4 109733388 109733399 -45896721 + L1Md_F3 LINE L1 5084 5084 -799 4 1422 320 0 25 0 chr4 109733399 109733439 -45896681 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1422 35232 48 1 8 chr4 109733439 109733959 -45896161 + L1Md_F3 LINE L1 5084 5585 -298 4 1422 8272 39 5 5 chr4 109733960 109734958 -45895162 + L1Md_F3 LINE L1 5587 6584 0 4 1422 544 265 37 26 chr4 109735045 109735235 -45894885 + ORR1D2 LTR MaLR 177 368 -2 4 1422 854 308 95 26 chr4 109735291 109735744 -45894376 - Tigger13a DNA MER2_type -174 597 114 4 1422 450 0 0 0 chr4 109736451 109736501 -45893619 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1422 387 252 70 16 chr4 109736627 109736756 -45893364 + L2a LINE L2 3273 3408 -18 4 1422 456 19 0 0 chr4 109737010 109737063 -45893057 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1422 235 231 19 19 chr4 109737995 109738048 -45892072 - tRNA-Ala-GCY_ tRNA tRNA -3 72 20 4 1422 435 68 0 0 chr4 109738050 109738109 -45892011 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1422 290 309 46 10 chr4 109738138 109738270 -45891850 - B1F SINE Alu -1 148 13 4 1422 241 353 13 39 chr4 109738270 109738294 -45891826 - ID_B1 SINE B4 -1 223 72 4 1422 510 255 132 35 chr4 109738340 109738718 -45891402 - L1MC5 LINE L1 -68 7893 7509 4 1422 267 31 0 0 chr4 109738737 109738769 -45891351 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1422 432 0 0 0 chr4 109738769 109738816 -45891304 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1422 337 265 89 49 chr4 109738837 109738960 -45891160 - RSINE1 SINE B4 -32 133 6 4 1422 892 282 53 60 chr4 109738974 109738991 -45891129 - L1MC5 LINE L1 -449 7512 7497 4 1422 360 43 0 0 chr4 109738991 109739037 -45891083 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 4 1422 892 282 53 60 chr4 109739037 109739548 -45890572 - L1MC5 LINE L1 -465 7496 6988 4 1422 2205 83 3 140 chr4 109739550 109739929 -45890191 - ORR1A2 LTR MaLR 0 327 1 4 1422 209 68 66 33 chr4 109739970 109740031 -45890089 + A-rich Low_complexity Low_complexity 4 66 0 4 1422 330 261 140 80 chr4 109740072 109740272 -45889848 - L1MC5 LINE L1 -1057 6904 6693 4 1422 1441 184 36 55 chr4 109740535 109740898 -45889222 - Lx9 LINE L1 -3 7641 7286 4 1422 194 91 0 29 chr4 109740942 109740976 -45889144 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 4 1422 957 141 0 0 chr4 109740978 109741120 -45889000 - B1_Mur4 SINE Alu -7 143 2 4 1422 988 245 9 5 chr4 109741146 109741359 -45888761 - B3 SINE B2 -2 214 1 4 1422 486 88 0 0 chr4 109741476 109741544 -45888576 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1422 1000 266 80 42 chr4 109741601 109742079 -45888041 - L1MA4A LINE L1 -374 5929 5434 4 1422 321 312 92 29 chr4 109742085 109742323 -45887797 - L1ME3B LINE L1 -289 5951 5699 4 1422 305 230 0 0 chr4 109742409 109742483 -45887637 - Charlie1b DNA MER1_type -57 466 393 4 1422 333 254 84 8 chr4 109742539 109742658 -45887462 - Charlie1b DNA MER1_type -236 287 160 4 1422 445 300 69 17 chr4 109744617 109744790 -45885330 - MIRb SINE MIR -36 232 51 4 1422 438 308 179 4 chr4 109745723 109745950 -45884170 + MIR SINE MIR 5 260 -8 4 1422 724 304 54 11 chr4 109746153 109746429 -45883691 - MLT1J1 LTR MaLR -14 430 143 4 1422 1151 262 68 41 chr4 109746674 109747068 -45883052 + MTD LTR MaLR 1 405 -14 4 1422 285 251 107 18 chr4 109747488 109747622 -45882498 - Lx7 LINE L1 -1731 5913 5768 4 1422 24 32 0 0 chr4 109747886 109747917 -45882203 + AT_rich Low_complexity Low_complexity 1 31 0 4 1422 482 160 42 11 chr4 109747929 109748024 -45882096 - B3A SINE B2 -55 143 46 4 1422 360 0 0 0 chr4 109748130 109748170 -45881950 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1422 194 330 11 54 chr4 109748204 109748297 -45881823 + MIRc SINE MIR 86 174 -102 4 1422 391 323 24 18 chr4 109749139 109749309 -45880811 + MIRb SINE MIR 78 248 -20 4 1422 825 205 38 2 chr4 109749403 109749600 -45880520 - B3A SINE B2 -11 205 3 4 1422 281 331 28 14 chr4 109749786 109749927 -45880193 + MIR3 SINE MIR 5 147 -61 4 1422 450 255 54 60 chr4 109751236 109751403 -45878717 - MLT1B LTR MaLR 0 390 225 4 1422 5637 36 3 15 chr4 109751443 109752127 -45877993 + L1Md_T LINE L1 5906 6581 -1 4 1422 1850 306 105 53 chr4 109752162 109753174 -45876946 - Lx8 LINE L1 -29 7444 6381 4 1422 279 311 118 26 chr4 109753176 109753404 -45876716 - MLT1B LTR MaLR -76 314 66 4 1422 194 250 62 0 chr4 109754533 109754597 -45875523 - MIRc SINE MIR -167 101 34 4 1422 267 252 148 20 chr4 109755099 109755200 -45874920 - PB1D7 SINE Alu -5 115 2 4 1422 284 212 504 18 chr4 109755297 109755407 -45874713 - RSINE1 SINE B4 0 165 2 4 1422 372 250 54 27 chr4 109755564 109755675 -45874445 + PB1D7 SINE Alu 1 114 -6 4 1422 205 313 23 0 chr4 109756399 109756491 -45873629 - MIRb SINE MIR -136 132 27 4 1422 370 337 123 0 chr4 109757043 109757230 -45872890 - MLT1J2 LTR MaLR -197 251 42 4 1422 207 301 27 14 chr4 109757299 109757373 -45872747 - MIRb SINE MIR -90 178 104 4 1422 300 53 0 0 chr4 109757801 109757839 -45872281 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1422 2415 128 15 63 chr4 109757839 109758249 -45871871 + ORR1B1 LTR MaLR 5 394 0 4 1422 671 319 0 0 chr4 109758249 109758412 -45871708 - RSINE1 SINE B4 -1 164 2 4 1422 211 283 0 0 chr4 109759094 109759140 -45870980 + polypurine Low_complexity Low_complexity 3 48 0 4 1422 193 306 139 32 chr4 109759529 109759809 -45870311 - L2c LINE L2 -88 3299 2990 4 1422 263 297 26 94 chr4 109760071 109760241 -45869879 + MIR3 SINE MIR 40 193 -15 4 1422 457 267 16 8 chr4 109761103 109761224 -45868896 + B1_Mur1 SINE Alu 22 143 -6 4 1422 571 279 7 35 chr4 109761268 109761409 -45868711 - RSINE1 SINE B4 -21 144 8 4 1422 600 201 41 20 chr4 109761493 109761640 -45868480 - MTC LTR MaLR 0 421 272 4 1422 450 0 0 0 chr4 109761646 109761696 -45868424 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1422 283 305 0 24 chr4 109761696 109761780 -45868340 - PB1D10 SINE Alu -35 82 1 4 1422 1996 159 33 36 chr4 109762881 109763273 -45866847 + MTB_Mm LTR MaLR 1 391 -16 4 1422 180 0 0 0 chr4 109763478 109763498 -45866622 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 1422 691 259 76 25 chr4 109763532 109763770 -45866350 + MIR SINE MIR 4 253 -9 4 1422 798 161 161 6 chr4 109763782 109764019 -45866101 - L1MA6 LINE L1 -2 6298 6032 4 1422 357 244 104 16 chr4 109764486 109764622 -45865498 + MIR3 SINE MIR 28 169 -39 4 1422 396 269 153 4 chr4 109766411 109766646 -45863474 + L1ME2 LINE L1 5872 6141 -23 4 1422 254 316 9 17 chr4 109767228 109767344 -45862776 - MIRc SINE MIR -97 171 57 4 1422 411 235 0 0 chr4 109767562 109767859 -45862261 + (AGGTG)n Simple_repeat Simple_repeat 1 297 0 4 1422 282 196 0 0 chr4 109767932 109768029 -45862091 + (AGGTG)n Simple_repeat Simple_repeat 1 97 0 4 1422 562 89 0 22 chr4 109770037 109770129 -45859991 + (TCC)n Simple_repeat Simple_repeat 1 90 0 4 1422 38666 30 0 0 chr4 109770195 109776849 -45853271 - L1Md_T LINE L1 0 6585 1 4 1422 963 289 15 26 chr4 109776887 109777157 -45852963 + B4A SINE B4 8 274 -18 4 1422 210 213 0 41 chr4 109777296 109777345 -45852775 - PB1 SINE Alu -6 121 75 4 1422 262 329 12 0 chr4 109777561 109777646 -45852474 - L1MC LINE L1 -2227 5655 5570 4 1422 244 309 0 0 chr4 109777860 109777941 -45852179 + MER58A DNA MER1_type 34 114 -110 4 1422 228 179 7 10 chr4 109780111 109780175 -45849945 - MIRc SINE MIR -101 161 107 4 1422 266 342 62 19 chr4 109781973 109782133 -45847987 - MIR SINE MIR -29 239 74 4 1422 501 138 0 0 chr4 109782763 109782857 -45847263 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 1422 365 0 22 0 chr4 109782857 109782902 -45847218 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1422 1250 131 19 163 chr4 109783048 109783194 -45846926 - URR1A DNA MER1_type 0 226 120 5 1422 1138 82 7 0 chr4 109783194 109783340 -45846780 - B1_Mus1 SINE Alu 0 148 2 5 1422 1250 131 19 163 chr4 109783340 109783457 -45846663 - URR1A DNA MER1_type -107 119 1 5 1422 411 296 167 26 chr4 109783812 109784201 -45845919 - L2a LINE L2 0 3426 2983 5 1422 233 233 16 16 chr4 109784387 109784448 -45845672 + MIR SINE MIR 85 145 -117 5 1422 1479 223 9 25 chr4 109784448 109784775 -45845345 - MTEa LTR MaLR -55 324 3 5 1422 498 338 128 3 chr4 109786106 109786394 -45843726 + LTR16C LTR ERVL 149 472 -17 5 1422 414 0 0 0 chr4 109786944 109786990 -45843130 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1422 414 317 21 7 chr4 109786990 109787133 -45842987 + (CA)n Simple_repeat Simple_repeat 2 146 0 5 1422 260 263 53 0 chr4 109788116 109788192 -45841928 + MIRb SINE MIR 93 172 -96 5 1422 307 0 23 23 chr4 109788409 109788453 -45841667 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1422 698 153 0 71 chr4 109788453 109788592 -45841528 - B1_Mur3 SINE Alu -11 136 9 5 1422 309 250 0 141 chr4 109788465 109788614 -45841506 - ID_B1 SINE B4 -21 203 76 5 1422 519 340 0 69 chr4 109789497 109789671 -45840449 + RSINE1 SINE B4 4 165 0 5 1422 270 0 0 0 chr4 109789672 109789702 -45840418 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1422 764 198 105 22 chr4 109789737 109789918 -45840202 + B3A SINE B2 3 198 0 5 1422 884 303 103 24 chr4 109790203 109790670 -45839450 + MLT2B1 LTR ERVL 15 518 -2 5 1422 180 288 43 43 chr4 109791596 109791665 -45838455 - MIRm SINE MIR -43 233 165 5 1422 322 268 93 7 chr4 109792856 109792995 -45837125 - MIR SINE MIR -13 249 99 5 1422 22 0 0 0 chr4 109793871 109793893 -45836227 + AT_rich Low_complexity Low_complexity 1 22 0 5 1422 236 294 77 13 chr4 109794510 109794665 -45835455 + L3 LINE CR1 4103 4267 -222 5 1422 235 227 8 30 chr4 109794915 109795047 -45835073 + CT-rich Low_complexity Low_complexity 2 130 0 5 1422 222 62 0 0 chr4 109795882 109795914 -45834206 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1422 1099 70 7 14 chr4 109795914 109796058 -45834062 - B1_Mm SINE Alu -4 143 1 5 1422 4047 156 93 75 chr4 109796214 109797100 -45833020 - RMER19B LTR ERVK 0 902 1 5 1422 303 240 219 16 chr4 109797108 109797231 -45832889 + B1F2 SINE Alu 1 148 -1 5 1422 1144 92 104 0 chr4 109797311 109797469 -45832651 + B2_Mm2 SINE B2 2 177 -18 5 1422 405 0 0 0 chr4 109797469 109797514 -45832606 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 5 1422 1144 92 104 0 chr4 109797514 109797528 -45832592 + B2_Mm2 SINE B2 178 191 -4 5 1422 299 207 178 21 chr4 109798658 109798766 -45831354 - MIR SINE MIR -116 146 25 5 1422 884 7 33 33 chr4 109798880 109799030 -45831090 + (GGAGA)n Simple_repeat Simple_repeat 3 152 0 5 1422 181 256 157 34 chr4 109800619 109800708 -45829412 + L2b LINE L2 3272 3371 -4 5 1422 585 0 0 0 chr4 109802458 109802523 -45827597 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1422 250 268 11 23 chr4 109802623 109802711 -45827409 + MIRc SINE MIR 119 205 -63 5 1422 251 196 20 0 chr4 109802762 109802813 -45827307 - L1MEc LINE L1 -4081 2334 2283 5 1422 528 16 0 0 chr4 109803006 109803067 -45827053 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1422 1237 41 0 0 chr4 109803067 109803213 -45826907 - B1_Mm SINE Alu -1 146 1 5 1422 292 333 77 11 chr4 109803224 109803406 -45826714 - L1MEc LINE L1 -6081 319 126 5 1422 245 309 54 31 chr4 109804386 109804516 -45825604 - L2a LINE L2 -15 3411 3279 5 1422 474 18 0 0 chr4 109805024 109805079 -45825041 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1422 275 320 46 0 chr4 109805639 109805792 -45824328 + L3b LINE CR1 120 279 -203 5 1422 180 288 55 121 chr4 109806413 109806595 -45823525 - MIRc SINE MIR -10 258 89 5 1422 360 0 0 0 chr4 109807548 109807588 -45822532 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1422 465 19 0 0 chr4 109807588 109807641 -45822479 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1422 325 278 0 0 chr4 109807670 109807742 -45822378 - MLT2B1 LTR ERVL -124 443 372 5 1422 205 320 57 28 chr4 109808971 109809077 -45821043 + MIR SINE MIR 36 144 -64 5 1422 336 289 95 71 chr4 109809078 109809142 -45820978 + RMER30 DNA MER1_type 10 82 -120 5 1422 378 0 0 0 chr4 109809142 109809184 -45820936 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1422 336 289 95 71 chr4 109809184 109809287 -45820833 + RMER30 DNA MER1_type 83 181 -21 5 1422 627 14 0 0 chr4 109809296 109809368 -45820752 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1422 263 206 0 60 chr4 109809369 109809436 -45820684 - B1_Mus2 SINE Alu -19 128 66 5 1422 647 182 8 8 chr4 109809408 109809530 -45820590 - B1_Mur4 SINE Alu -26 124 3 5 1422 299 254 40 247 chr4 109809530 109809752 -45820368 - MT2B LTR ERVL -446 155 1 5 1422 182 400 95 0 chr4 109810941 109811036 -45819084 + MIRm SINE MIR 157 260 -16 5 1422 281 280 13 13 chr4 109811325 109811401 -45818719 - ID4_ SINE ID -6 77 2 5 1422 856 247 87 51 chr4 109811412 109811745 -45818375 + MLT1H LTR MaLR 193 537 -12 5 1422 252 270 0 37 chr4 109812630 109812739 -45817381 - MIRc SINE MIR -112 156 59 5 1422 227 389 55 45 chr4 109813461 109813663 -45816457 + LTR16A1 LTR ERVL 251 454 -2 5 1422 26 0 0 0 chr4 109814551 109814577 -45815543 + AT_rich Low_complexity Low_complexity 1 26 0 5 1422 848 253 208 13 chr4 109814840 109814997 -45815123 - MTEa LTR MaLR -6 373 210 5 1422 675 0 0 0 chr4 109814997 109815072 -45815048 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1422 848 253 208 13 chr4 109815072 109815222 -45814898 - MTEa LTR MaLR -170 209 6 5 1422 200 271 14 28 chr4 109815297 109815369 -45814751 + MIRc SINE MIR 85 155 -113 5 1422 238 267 108 32 chr4 109815735 109815828 -45814292 - AluF_3 SINE Alu -100 211 148 5 1422 1536 22 0 0 chr4 109816081 109816261 -45813859 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1422 672 135 0 0 chr4 109816263 109816374 -45813746 + (TCC)n Simple_repeat Simple_repeat 2 112 0 5 1422 2983 144 18 68 chr4 109816388 109816948 -45813172 - Lx4A LINE L1 0 7058 6527 5 1422 329 241 114 0 chr4 109817053 109817132 -45812988 + RMER1B Other Other 50 137 -929 5 1422 865 300 15 102 chr4 109817357 109817865 -45812255 + RMER1C Other Other 165 823 -519 5 1422 3190 240 59 74 chr4 109817909 109819002 -45811118 + RMER1C Other Other 163 1339 -3 5 1422 962 197 188 12 chr4 109818998 109819352 -45810768 - Lx7 LINE L1 -8 7688 7016 5 1422 22026 137 30 32 chr4 109819353 109823407 -45806713 - L1_Mur3 LINE L1 -712 5168 1117 5 1422 4044 137 76 19 chr4 109823407 109823551 -45806569 + Lx2B LINE L1 6239 6401 -599 5 1422 591 15 0 0 chr4 109823551 109823619 -45806501 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1422 4044 137 76 19 chr4 109823619 109824194 -45805926 + Lx2B LINE L1 6402 6998 -2 5 1422 3237 119 37 72 chr4 109824194 109824579 -45805541 - L1_Mur3 LINE L1 -6612 1116 751 5 1422 412 329 25 13 chr4 109827009 109827166 -45802954 + MIR SINE MIR 50 208 -54 5 1422 437 238 92 7 chr4 109828112 109828264 -45801856 + MIR SINE MIR 50 214 -48 5 1422 365 185 49 0 chr4 109829743 109829824 -45800296 - B1F SINE Alu -51 98 14 5 1422 384 77 0 0 chr4 109829862 109829914 -45800206 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1422 279 114 0 0 chr4 109830060 109830104 -45800016 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1422 202 182 0 0 chr4 109830650 109830683 -45799437 + (CCTG)n Simple_repeat Simple_repeat 1 33 0 5 1422 237 351 34 26 chr4 109830974 109831091 -45799029 + MIRb SINE MIR 123 240 -28 5 1422 390 151 0 0 chr4 109831122 109831195 -45798925 + (TGG)n Simple_repeat Simple_repeat 2 74 0 5 1422 250 282 28 0 chr4 109831511 109831582 -45798538 + MIRc SINE MIR 65 137 -131 5 1422 2239 132 0 9 chr4 109831802 109832131 -45797989 + ORR1A3 LTR MaLR 1 326 0 5 1422 198 227 113 5 chr4 109832467 109832558 -45797562 - MIRb SINE MIR -28 240 139 5 1422 606 241 0 65 chr4 109833492 109833606 -45796514 + ID_B1 SINE B4 80 192 -32 5 1422 1033 226 94 56 chr4 109833606 109833966 -45796154 - ORR1D1 LTR MaLR 0 374 1 5 1422 606 241 0 65 chr4 109833966 109834006 -45796114 + ID_B1 SINE B4 193 224 0 5 1422 567 132 0 0 chr4 109835244 109835335 -45794785 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 1422 1202 156 0 10 chr4 109835346 109835547 -45794573 - Lx4A LINE L1 -30 7028 6830 5 1422 9140 4 0 3 chr4 109836287 109837348 -45792772 - L1Md_A LINE L1 0 6582 5526 5 1422 295 279 169 14 chr4 109837348 109837490 -45792630 + MIRb SINE MIR 56 219 -49 5 177 374 323 38 77 chr4 109838284 109838519 -45791601 - L2b LINE L2 -97 3278 3053 5 1423 229 313 262 13 chr4 109838747 109838896 -45791224 - MIRb SINE MIR -20 242 57 5 1423 607 249 78 57 chr4 109839377 109839569 -45790551 + RMER30 DNA MER1_type 5 200 -2 5 1423 200 204 55 18 chr4 109840110 109840165 -45789955 + L2c LINE L2 3020 3076 -311 5 1423 282 318 65 27 chr4 109840171 109840442 -45789678 - L2c LINE L2 0 3426 3125 5 1423 272 354 10 20 chr4 109840691 109840789 -45789331 - L2b LINE L2 -15 3360 3264 5 1423 837 278 15 0 chr4 109842887 109843092 -45787028 - ID_B1 SINE B4 -16 208 1 5 1423 612 0 0 0 chr4 109843191 109843259 -45786861 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1423 255 283 42 106 chr4 109843485 109843627 -45786493 - MIRc SINE MIR -35 233 101 5 1423 331 285 65 14 chr4 109843745 109843884 -45786236 + MIRb SINE MIR 89 234 -34 5 1423 650 279 27 0 chr4 109844090 109844237 -45785883 + RSINE1 SINE B4 15 165 0 5 1423 514 28 28 0 chr4 109844244 109844316 -45785804 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1423 196 290 130 0 chr4 109844534 109844603 -45785517 + L2a LINE L2 2834 2911 -508 5 1423 808 278 56 68 chr4 109844642 109844997 -45785123 + ORR1E LTR MaLR 1 351 -8 5 1423 316 320 119 64 chr4 109844985 109845271 -45784849 - LTR33A LTR ERVL -17 503 226 5 1423 745 159 282 0 chr4 109845271 109845434 -45784686 + B3 SINE B2 2 210 -6 6 1423 316 322 100 56 chr4 109845434 109845541 -45784579 - LTR33A LTR ERVL -295 225 103 5 1423 247 350 213 7 chr4 109845614 109846017 -45784103 + L2a LINE L2 2922 3407 -19 5 1423 397 281 21 126 chr4 109847112 109847303 -45782817 + B4A SINE B4 5 175 -117 6 1423 902 103 81 0 chr4 109847347 109847483 -45782637 - B1_Mm SINE Alu 0 147 1 6 1423 405 0 0 0 chr4 109848144 109848189 -45781931 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1423 192 152 0 0 chr4 109848200 109848233 -45781887 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 1423 236 221 87 14 chr4 109848951 109849020 -45781100 - MIRb SINE MIR -180 88 15 6 1423 845 260 24 5 chr4 109849247 109849452 -45780668 - B3 SINE B2 -6 210 2 6 1423 311 374 113 4 chr4 109849863 109850094 -45780026 + MLT1I LTR MaLR 156 411 0 6 1423 5576 113 24 8 chr4 109850929 109851766 -45778354 - Lx LINE L1 -2 6652 5803 6 1423 198 328 96 21 chr4 109851925 109852112 -45778008 - L2 LINE L2 -827 2592 2392 6 1423 450 330 0 0 chr4 109852172 109852284 -45777836 + ID_B1 SINE B4 82 193 -31 6 1423 5731 39 0 4 chr4 109852323 109853000 -45777120 - L1Md_F2 LINE L1 0 6582 5909 6 1423 233 275 0 14 chr4 109853046 109853116 -45777004 + CT-rich Low_complexity Low_complexity 5 73 0 6 1423 573 227 64 81 chr4 109853125 109853504 -45776616 + RLTR11B LTR ERVK 6 412 -29 6 1423 2274 231 113 2 chr4 109853543 109854046 -45776074 - Lx6 LINE L1 -119 7341 6783 6 1423 216 0 0 0 chr4 109854079 109854103 -45776017 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1423 186 71 0 0 chr4 109854153 109854181 -45775939 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1423 378 0 0 0 chr4 109854231 109854273 -45775847 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1423 221 0 35 0 chr4 109854323 109854352 -45775768 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1423 342 0 0 0 chr4 109854402 109854440 -45775680 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1423 306 0 0 0 chr4 109854490 109854524 -45775596 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1423 414 0 0 0 chr4 109854574 109854620 -45775500 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1423 270 0 0 0 chr4 109854670 109854700 -45775420 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1423 542 310 105 24 chr4 109854857 109855105 -45775015 + B4A SINE B4 1 268 -24 6 1423 462 18 0 0 chr4 109855105 109855160 -45774960 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1423 254 293 98 69 chr4 109855162 109855437 -45774683 - RLTR15 LTR ERVK -5 354 72 6 1423 353 182 11 33 chr4 109855467 109855558 -45774562 - RLTR15 LTR ERVK -238 121 33 6 1423 405 0 0 0 chr4 109855602 109855647 -45774473 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1423 459 132 13 0 chr4 109856005 109856081 -45774039 - URR1A DNA MER1_type -100 126 50 6 1423 718 226 126 45 chr4 109856160 109856382 -45773738 - MTC LTR MaLR -181 240 1 6 1423 264 347 10 0 chr4 109856845 109856943 -45773177 - L2a LINE L2 -1 3425 3327 6 1423 231 114 0 0 chr4 109858590 109858625 -45771495 + (CAG)n Simple_repeat Simple_repeat 1 35 0 6 1423 1775 67 4 0 chr4 109858643 109858868 -45771252 + L1_Mus2 LINE L1 6341 6566 0 6 1423 1129 219 52 16 chr4 109858882 109859113 -45771007 + Lx9 LINE L1 7196 7424 -220 6 1423 450 114 0 0 chr4 109859113 109859183 -45770937 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1423 1129 219 52 16 chr4 109859183 109859202 -45770918 + Lx9 LINE L1 7425 7454 -190 6 1423 36103 49 0 5 chr4 109859310 109864999 -45765121 + L1Md_T LINE L1 1 5588 -298 6 1423 8652 32 0 0 chr4 109865000 109865996 -45764124 + L1Md_T LINE L1 5590 6585 0 6 1423 465 66 0 0 chr4 109866009 109866070 -45764050 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 1423 368 327 0 0 chr4 109866682 109866789 -45763331 - Lx7 LINE L1 -1354 6342 6236 6 1423 596 268 49 29 chr4 109867508 109867814 -45762306 - MLT1D LTR MaLR -8 497 67 6 1423 639 360 61 5 chr4 109867822 109868199 -45761921 + MLT1A1 LTR MaLR 9 406 -2 6 1423 215 372 0 13 chr4 109868303 109868382 -45761738 - L2c LINE L2 -62 3325 3248 6 1423 1203 20 0 0 chr4 109868550 109868703 -45761417 + ORR1A0-int LTR MaLR 1640 1792 0 6 1423 3016 40 0 0 chr4 109868703 109869049 -45761071 + ORR1A0 LTR MaLR 1 346 0 6 1423 309 295 56 142 chr4 109869112 109869274 -45760846 - MLT2B3 LTR ERVL -341 213 66 6 1423 278 232 50 50 chr4 109869289 109869389 -45760731 - MTEa LTR MaLR -4 375 276 6 1423 332 69 0 49 chr4 109869455 109869516 -45760604 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 6 1423 258 266 29 95 chr4 109869537 109869674 -45760446 - MTEa LTR MaLR -167 192 65 6 1423 3826 174 37 12 chr4 109869776 109870458 -45759662 + Lx5 LINE L1 6352 7050 0 6 1423 825 283 41 41 chr4 109870546 109870576 -45759544 - B4 SINE B4 0 292 270 6 1423 396 0 0 0 chr4 109870576 109870620 -45759500 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1423 825 283 41 41 chr4 109870620 109870880 -45759240 - B4 SINE B4 -23 269 2 6 1423 402 275 76 8 chr4 109870883 109871015 -45759105 - B1F SINE Alu -8 141 1 6 1423 250 235 0 0 chr4 109871845 109871896 -45758224 + CT-rich Low_complexity Low_complexity 1 51 0 6 1423 313 269 183 34 chr4 109872539 109872747 -45757373 + MLT1A0 LTR MaLR 1 239 -169 6 1423 247 324 147 0 chr4 109873177 109873279 -45756841 + MIRb SINE MIR 41 157 -111 6 1423 441 0 0 0 chr4 109874531 109874580 -45755540 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1423 22 0 0 0 chr4 109875310 109875332 -45754788 + AT_rich Low_complexity Low_complexity 1 22 0 6 1423 200 386 19 32 chr4 109875763 109875921 -45754199 + MIRb SINE MIR 104 259 -9 6 1423 279 280 139 7 chr4 109876021 109876165 -45753955 - MER5A1 DNA MER1_type 0 166 4 6 1423 28 29 0 0 chr4 109877430 109877465 -45752655 + AT_rich Low_complexity Low_complexity 1 35 0 6 1423 24 0 0 0 chr4 109877975 109877999 -45752121 + AT_rich Low_complexity Low_complexity 1 24 0 6 1423 21 36 0 0 chr4 109878186 109878214 -45751906 + AT_rich Low_complexity Low_complexity 1 28 0 6 1423 198 71 0 0 chr4 109878712 109878740 -45751380 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1423 27 0 0 0 chr4 109878894 109878921 -45751199 + AT_rich Low_complexity Low_complexity 1 27 0 6 1423 228 100 0 0 chr4 109880530 109880570 -45749550 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1423 22 35 0 0 chr4 109880670 109880699 -45749421 + AT_rich Low_complexity Low_complexity 1 29 0 6 1423 22 56 0 0 chr4 109881578 109881614 -45748506 + AT_rich Low_complexity Low_complexity 1 36 0 6 1423 480 139 0 0 chr4 109882078 109882157 -45747963 + (A)n Simple_repeat Simple_repeat 1 79 0 6 1423 202 208 0 36 chr4 109882234 109882289 -45747831 + A-rich Low_complexity Low_complexity 3 55 0 6 1423 193 274 48 0 chr4 109887781 109887843 -45742277 + L2b LINE L2 3091 3155 -220 6 1423 396 0 0 0 chr4 109887946 109887990 -45742130 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1423 232 258 0 16 chr4 109889990 109890053 -45740067 + MIRb SINE MIR 201 262 -6 6 1423 210 307 83 50 chr4 109890035 109890155 -45739965 - L2b LINE L2 -10 3365 3242 6 1423 29 0 0 0 chr4 109891311 109891340 -45738780 + AT_rich Low_complexity Low_complexity 1 29 0 6 1423 304 290 145 0 chr4 109891839 109891970 -45738150 - MIRc SINE MIR -111 157 8 6 1423 181 272 60 24 chr4 109892091 109892174 -45737946 - MIR SINE MIR -65 143 58 6 1423 444 82 0 0 chr4 109894202 109894263 -45735857 + (CACG)n Simple_repeat Simple_repeat 1 61 0 6 1423 227 133 22 0 chr4 109894437 109894482 -45735638 + CT-rich Low_complexity Low_complexity 2 47 0 6 1423 241 242 167 0 chr4 109894506 109894572 -45735548 - B1F SINE Alu -72 77 1 6 1423 274 327 0 28 chr4 109895273 109895380 -45734740 + MIRb SINE MIR 74 177 -91 6 1423 231 188 30 45 chr4 109896023 109896090 -45734030 + Charlie8 DNA MER1_type 94 159 -2269 6 1423 696 221 0 0 chr4 109896123 109896392 -45733728 + (CAT)n Simple_repeat Simple_repeat 1 269 0 6 1423 344 175 0 24 chr4 109896713 109896795 -45733325 + L1_Mus2 LINE L1 6487 6566 0 6 1423 498 189 0 0 chr4 109899272 109899378 -45730742 + GA-rich Low_complexity Low_complexity 2 107 0 6 1423 318 313 65 45 chr4 109899703 109899857 -45730263 + MIRb SINE MIR 104 260 -8 6 1423 561 76 0 0 chr4 109900941 109901020 -45729100 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1423 315 0 0 0 chr4 109901044 109901079 -45729041 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1423 253 268 134 0 chr4 109903585 109903682 -45726438 - MER58B DNA MER1_type -15 326 217 6 1423 207 0 0 0 chr4 109903686 109903709 -45726411 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1423 299 278 33 57 chr4 109904476 109904598 -45725522 + MIRb SINE MIR 77 195 -73 6 1423 443 324 67 39 chr4 109904608 109904862 -45725258 - MIRb SINE MIR -2 266 6 6 1423 360 340 50 25 chr4 109905102 109905262 -45724858 + MER5A1 DNA MER1_type 3 166 0 6 1423 669 358 26 14 chr4 109906023 109906445 -45723675 - L2a LINE L2 -6 3420 2994 6 1423 519 45 0 0 chr4 109906552 109906618 -45723502 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1423 593 236 6 69 chr4 109906642 109906801 -45723319 - B4 SINE B4 -46 246 98 6 1423 253 0 0 0 chr4 109906801 109906838 -45723282 + L1Md_T LINE L1 6546 6582 0 6 1423 345 47 0 0 chr4 109906989 109907032 -45723088 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1423 331 259 5 9 chr4 109907057 109907147 -45722973 - B4 SINE B4 -203 89 2 6 1423 1606 37 0 10 chr4 109907621 109907813 -45722307 + B2_Mm1t SINE B2 1 190 -3 6 1423 182 255 0 21 chr4 109909073 109909121 -45720999 + L2b LINE L2 3325 3371 -4 6 1423 289 280 61 79 chr4 109911937 109912143 -45717977 + MIRb SINE MIR 14 202 -60 6 1423 456 19 0 0 chr4 109913174 109913227 -45716893 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1423 703 313 50 43 chr4 109913246 109913523 -45716597 - B4 SINE B4 0 292 14 6 1423 357 179 0 0 chr4 109914822 109914906 -45715214 + GA-rich Low_complexity Low_complexity 1 84 0 6 1423 305 330 52 0 chr4 109915367 109915464 -45714656 + MIRb SINE MIR 50 151 -117 6 1423 590 317 54 49 chr4 109915530 109915898 -45714222 - MLT1A LTR MaLR -4 370 1 6 1423 189 200 22 0 chr4 109916139 109916184 -45713936 + MIRc SINE MIR 120 165 -103 6 1423 260 172 17 0 chr4 109916331 109916389 -45713731 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1423 1050 285 35 3 chr4 109916392 109916674 -45713446 - B4A SINE B4 0 292 2 6 1423 239 0 0 31 chr4 109917591 109917623 -45712497 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1423 450 104 138 28 chr4 109918273 109918382 -45711738 + Lx9 LINE L1 7518 7638 -6 6 1423 198 0 0 0 chr4 109919056 109919078 -45711042 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 6 1423 327 25 0 0 chr4 109919935 109919975 -45710145 + (TGG)n Simple_repeat Simple_repeat 1 40 0 7 1423 220 236 36 0 chr4 109919977 109920032 -45710088 - ID4_ SINE ID -26 57 1 7 1423 668 235 101 119 chr4 109923391 109923618 -45706502 + ID_B1 SINE B4 2 224 0 7 1423 7482 45 14 3 chr4 109924894 109925804 -45704316 - L1Md_F2 LINE L1 0 6582 5663 7 1423 1765 202 44 25 chr4 109925997 109926404 -45703716 + MTD LTR MaLR 3 417 -2 7 1423 363 309 162 21 chr4 109926690 109927169 -45702951 - L1ME2z LINE L1 -132 6030 5493 7 1423 300 154 0 0 chr4 109927313 109927365 -45702755 + (TTA)n Simple_repeat Simple_repeat 3 54 0 7 1423 244 308 39 0 chr4 109927380 109927458 -45702662 - B1F SINE Alu -56 93 13 7 1423 23 33 0 0 chr4 109927474 109927504 -45702616 + AT_rich Low_complexity Low_complexity 1 30 0 7 1423 576 329 0 0 chr4 109927517 109927678 -45702442 - RSINE1 SINE B4 -2 163 3 7 1423 212 379 21 0 chr4 109927714 109927809 -45702311 + MIRm SINE MIR 64 160 -116 7 1423 387 0 0 0 chr4 109929201 109929244 -45700876 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1423 267 31 0 0 chr4 109931031 109931063 -45699057 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1423 41 58 0 0 chr4 109931140 109931209 -45698911 + AT_rich Low_complexity Low_complexity 1 69 0 7 1423 573 268 36 68 chr4 109931220 109931440 -45698680 - L1MB4 LINE L1 -20 6163 5951 7 1423 297 273 53 99 chr4 109931666 109931837 -45698283 - RSINE1 SINE B4 0 165 3 7 1423 923 150 0 0 chr4 109933648 109933788 -45696332 - B1_Mur4 SINE Alu -10 140 1 7 1423 24 67 0 0 chr4 109933838 109933883 -45696237 + AT_rich Low_complexity Low_complexity 1 45 0 7 1423 193 263 51 26 chr4 109934273 109934351 -45695769 - L2a LINE L2 -4 3422 3343 7 1423 24 67 0 0 chr4 109935201 109935246 -45694874 + AT_rich Low_complexity Low_complexity 1 45 0 7 1423 612 27 0 0 chr4 109935332 109935406 -45694714 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 1423 304 231 110 0 chr4 109937773 109937864 -45692256 + PB1D7 SINE Alu 15 115 -5 7 1423 238 150 32 32 chr4 109938325 109938387 -45691733 + A-rich Low_complexity Low_complexity 1 62 0 7 1423 298 333 123 41 chr4 109939244 109939463 -45690657 + MIRb SINE MIR 12 248 -20 7 1423 236 327 38 9 chr4 109941127 109941232 -45688888 - PB1D10 SINE Alu 0 117 10 7 1423 222 356 118 8 chr4 109941449 109941568 -45688552 + MIR SINE MIR 23 154 -108 7 1423 189 234 20 41 chr4 109943293 109943342 -45686778 - MIRm SINE MIR -125 151 104 7 1423 369 302 60 30 chr4 109943990 109944123 -45685997 + L2a LINE L2 3276 3412 -14 7 1423 285 320 87 32 chr4 109944248 109944374 -45685746 - MIR SINE MIR -123 139 7 7 1423 253 320 0 97 chr4 109944399 109944513 -45685607 + MIRb SINE MIR 3 105 -163 7 1423 315 0 0 0 chr4 109945283 109945318 -45684802 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1423 181 250 192 0 chr4 109945469 109945521 -45684599 + L2b LINE L2 3306 3367 -8 7 1423 201 305 179 9 chr4 109945845 109945951 -45684169 - MIRb SINE MIR -73 195 72 7 1423 228 296 119 25 chr4 109946550 109946668 -45683452 - MIRc SINE MIR -121 147 19 7 1423 182 135 86 103 chr4 109947396 109947454 -45682666 + L4 LINE RTE 1697 1753 -276 7 1423 297 167 0 188 chr4 109948079 109948175 -45681945 + PB1D10 SINE Alu 40 117 0 7 1423 224 91 0 22 chr4 109948179 109948224 -45681896 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 7 1423 4289 132 23 16 chr4 109948726 109949456 -45680664 - RMER6A LTR ERVK -21 735 1 7 1423 354 127 0 0 chr4 109949957 109950028 -45680092 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1423 874 229 50 5 chr4 109950713 109950915 -45679205 - B3 SINE B2 -5 211 1 7 1423 971 279 20 31 chr4 109950958 109951250 -45678870 + B4A SINE B4 3 291 -1 7 1423 507 107 0 0 chr4 109951257 109951332 -45678788 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1423 273 57 0 0 chr4 109952210 109952245 -45677875 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 7 1423 435 19 0 0 chr4 109952384 109952436 -45677684 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1423 353 325 0 49 chr4 109952641 109952764 -45677356 + PB1 SINE Alu 2 118 -9 7 1423 213 154 0 0 chr4 109953796 109953835 -45676285 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1423 189 0 0 0 chr4 109954661 109954682 -45675438 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1423 411 21 0 0 chr4 109955831 109955879 -45674241 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1423 216 0 0 0 chr4 109956848 109956872 -45673248 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1423 993 99 0 0 chr4 109957708 109957869 -45672251 + (GA)n Simple_repeat Simple_repeat 2 162 0 7 1423 21 36 0 0 chr4 109958341 109958369 -45671751 + AT_rich Low_complexity Low_complexity 1 28 0 7 1423 414 0 0 0 chr4 109958993 109959039 -45671081 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1423 22 0 0 0 chr4 109959938 109959960 -45670160 + AT_rich Low_complexity Low_complexity 1 22 0 7 1423 216 0 0 0 chr4 109960692 109960716 -45669404 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1423 527 43 0 14 chr4 109960820 109960891 -45669229 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 7 1423 252 0 0 0 chr4 109962686 109962714 -45667406 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1423 183 205 0 0 chr4 109963124 109963163 -45666957 + A-rich Low_complexity Low_complexity 5 43 0 7 1423 405 0 0 0 chr4 109963612 109963657 -45666463 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1423 201 94 18 54 chr4 109964120 109964176 -45665944 + A-rich Low_complexity Low_complexity 2 55 0 7 1423 360 43 0 0 chr4 109964527 109964573 -45665547 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1423 471 35 0 0 chr4 109965449 109965506 -45664614 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1423 740 149 0 7 chr4 109967232 109967374 -45662746 + (TA)n Simple_repeat Simple_repeat 2 142 0 7 1423 188 364 59 68 chr4 109967763 109967881 -45662239 - L2b LINE L2 -13 3362 3246 7 1423 257 255 102 41 chr4 109968875 109968973 -45661147 + L2a LINE L2 3303 3406 -20 7 1424 360 0 0 0 chr4 109971164 109971204 -45658916 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1424 414 0 0 0 chr4 109971204 109971249 -45658871 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1424 650 13 13 0 chr4 109971339 109971418 -45658702 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 7 1424 1058 135 6 0 chr4 109971419 109971597 -45658523 + (TC)n Simple_repeat Simple_repeat 2 180 0 7 1424 372 258 92 92 chr4 109971611 109971752 -45658368 - B4A SINE B4 -149 143 3 7 1424 180 0 0 0 chr4 109972125 109972145 -45657975 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1424 295 327 48 29 chr4 109972145 109972249 -45657871 - B3 SINE B2 -30 186 81 7 1424 5624 83 0 1 chr4 109972249 109973048 -45657072 - L1Md_F2 LINE L1 -737 5146 4349 7 1424 3335 62 0 0 chr4 109973045 109973493 -45656627 + L1Md_F2 LINE L1 5138 5585 -298 7 1424 8069 48 1 6 chr4 109973494 109974495 -45655625 + L1Md_F2 LINE L1 5587 6582 0 7 1424 192 362 84 25 chr4 109975004 109975123 -45654997 + L2b LINE L2 3241 3366 -9 7 1424 4479 18 0 0 chr4 109975455 109975964 -45654156 - L1Md_A LINE L1 0 6582 6074 7 1424 1196 62 0 0 chr4 109976156 109976301 -45653819 + B1_Mm SINE Alu 1 145 -2 7 1424 230 203 34 0 chr4 109976369 109976428 -45653692 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 7 1424 23 0 0 0 chr4 109976567 109976590 -45653530 + AT_rich Low_complexity Low_complexity 1 23 0 7 1424 180 279 14 14 chr4 109976708 109976777 -45653343 - L2a LINE L2 -415 3011 2943 7 1424 556 38 25 0 chr4 109977016 109977095 -45653025 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 7 1424 197 283 82 25 chr4 109977098 109977207 -45652913 - MIR SINE MIR -131 137 23 7 1424 188 375 18 0 chr4 109977296 109977352 -45652768 + L2c LINE L2 3260 3316 -71 7 1424 195 367 28 0 chr4 109977501 109977610 -45652510 - MIR SINE MIR -16 246 135 7 1424 218 360 64 47 chr4 109978331 109978567 -45651553 + L2c LINE L2 3114 3353 -34 7 1424 255 340 20 40 chr4 109978728 109978878 -45651242 + MIRc SINE MIR 87 233 -35 7 1424 181 185 292 0 chr4 109979541 109979606 -45650514 - L3 LINE CR1 -1 4488 4405 7 1424 427 334 215 15 chr4 109979751 109980082 -45650038 + MLT1J2 LTR MaLR 25 446 -2 7 1424 218 257 13 13 chr4 109980845 109980920 -45649200 + (AGGTG)n Simple_repeat Simple_repeat 4 78 0 7 1424 1667 278 43 43 chr4 109981018 109981174 -45648946 + Lx8 LINE L1 6186 6332 -1141 7 1424 256 24 0 47 chr4 109981174 109981217 -45648903 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 7 1424 1667 266 157 25 chr4 109981217 109982212 -45647908 + Lx8 LINE L1 6333 7468 -5 7 1424 191 341 68 55 chr4 109982568 109982714 -45647406 + MIRc SINE MIR 115 262 -6 7 1424 310 363 0 0 chr4 109983510 109983623 -45646497 - PB1D10 SINE Alu -1 116 4 7 1424 183 42 0 0 chr4 109983785 109983809 -45646311 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1424 603 293 118 11 chr4 109983817 109984166 -45645954 - MLT1B LTR MaLR -4 386 1 7 1424 610 75 53 0 chr4 109985644 109985738 -45644382 + B1_Mus2 SINE Alu 47 145 -2 7 1424 837 228 51 84 chr4 109986085 109986262 -45643858 - B3 SINE B2 -8 208 36 7 1424 1225 77 0 32 chr4 109986262 109986450 -45643670 + L1_Mus3 LINE L1 6457 6638 0 7 1424 837 228 51 84 chr4 109986450 109986487 -45643633 - B3 SINE B2 -181 35 1 7 1424 190 51 24 49 chr4 109986578 109986619 -45643501 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 7 1424 392 344 0 42 chr4 109987135 109987302 -45642818 - L2a LINE L2 -349 3077 2918 7 1424 21 0 0 0 chr4 109987595 109987616 -45642504 + AT_rich Low_complexity Low_complexity 1 21 0 7 1424 36290 30 0 0 chr4 109988098 109994772 -45635348 - L1Md_T LINE L1 0 6585 2 7 1424 1015 293 4 47 chr4 109995227 109995503 -45634617 + B4A SINE B4 2 265 -27 8 1424 1690 209 62 19 chr4 109995825 109995959 -45634161 - ORR1D1 LTR MaLR -2 419 244 8 1424 198 0 0 0 chr4 109995959 109995981 -45634139 + (CAGG)n Simple_repeat Simple_repeat 4 25 0 8 1424 1690 206 71 18 chr4 109995981 109996203 -45633917 - ORR1D1 LTR MaLR -131 243 1 8 1424 243 0 0 0 chr4 109996852 109996879 -45633241 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 1424 274 245 0 0 chr4 109997055 109997108 -45633012 - L2c LINE L2 -227 3160 3108 8 1424 437 215 13 0 chr4 109997166 109997245 -45632875 + ID4 SINE ID 4 83 0 8 1424 399 21 0 0 chr4 109997424 109997472 -45632648 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1424 427 337 117 57 chr4 109998264 109998528 -45631592 + LTR16A LTR ERVL 79 358 -93 8 1424 626 157 319 6 chr4 109998630 109998790 -45631330 - B3 SINE B2 -6 210 1 8 1424 240 286 39 13 chr4 109998803 109998881 -45631239 - ID4_ SINE ID -2 81 2 8 1424 213 211 19 19 chr4 109999700 109999753 -45630367 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1424 1083 190 15 10 chr4 109999798 110000000 -45630120 + ORR1D1 LTR MaLR 1 203 -171 8 1424 895 142 74 7 chr4 110000006 110000155 -45629965 + ORR1D1 LTR MaLR 216 374 0 1 1424 592 289 48 58 chr4 110000342 110000711 -45629409 - MLT2B4 LTR ERVL -88 468 3 2 1424 1221 135 16 5 chr4 110001935 110002128 -45627992 - B2_Mm2 SINE B2 0 195 1 3 1424 313 355 45 5 chr4 110002335 110002521 -45627599 + MIR SINE MIR 23 223 -45 4 1424 233 218 36 0 chr4 110003153 110003208 -45626912 - MIRb SINE MIR -8 260 204 5 1424 251 334 82 51 chr4 110003729 110004162 -45625958 - L2c LINE L2 -33 3393 2913 6 1424 441 0 0 0 chr4 110007051 110007100 -45623020 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 7 1424 26 0 0 0 chr4 110007630 110007656 -45622464 + AT_rich Low_complexity Low_complexity 1 26 0 8 1424 489 290 55 18 chr4 110008034 110008199 -45621921 + MLT1H LTR MaLR 1 171 -378 9 1424 867 155 0 0 chr4 110008275 110008449 -45621671 + GA-rich Low_complexity Low_complexity 1 174 0 1 1424 218 322 196 54 chr4 110008638 110008822 -45621298 - MIR SINE MIR -18 244 35 1 1424 396 17 17 0 chr4 110011476 110011534 -45618586 - L1Md_T LINE L1 0 6582 6524 1 1424 202 350 48 32 chr4 110011740 110011864 -45618256 + L2a LINE L2 3300 3425 -1 1 1424 337 353 87 47 chr4 110012830 110013083 -45617037 - LTR16B1 LTR ERVL -152 328 66 1 1424 282 278 80 68 chr4 110013186 110013348 -45616772 - Kanga11a DNA Tc2 -215 755 592 1 1424 324 311 63 37 chr4 110013923 110014113 -45616007 - Kanga11a DNA Tc2 -421 549 355 1 1424 1749 289 61 27 chr4 110014114 110014881 -45615239 - L1MB5 LINE L1 -1 6173 5381 1 1424 340 329 35 28 chr4 110014882 110015026 -45615094 - Kanga11a DNA Tc2 -681 289 145 1 1424 1907 178 67 16 chr4 110016133 110016521 -45613599 + MTD LTR MaLR 12 419 0 1 1424 281 316 31 31 chr4 110018009 110018107 -45612013 + MIRc SINE MIR 33 130 -138 1 1424 601 333 95 26 chr4 110018993 110019298 -45610822 + L2a LINE L2 2962 3287 -139 1 1424 630 0 0 0 chr4 110019613 110019683 -45610437 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 2 1424 1175 43 0 0 chr4 110019685 110019826 -45610294 - B1_Mm SINE Alu -6 141 1 2 1424 797 257 5 60 chr4 110019925 110020124 -45609996 + B3 SINE B2 1 188 -28 2 1424 585 0 0 0 chr4 110020124 110020189 -45609931 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1424 1547 114 6 97 chr4 110020219 110020530 -45609590 + Lx2 LINE L1 6715 6997 0 2 1424 436 100 25 0 chr4 110021236 110021316 -45608804 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1424 775 284 105 19 chr4 110021531 110021854 -45608266 + MLT1B LTR MaLR 21 371 -19 2 1424 311 159 222 1 chr4 110022175 110022254 -45607866 - PB1D10 SINE Alu -8 119 32 2 1424 227 274 28 112 chr4 110022459 110022566 -45607554 - LTR86C LTR ERVL -230 391 294 2 1424 255 257 0 108 chr4 110022669 110022752 -45607368 + ID4_ SINE ID 2 75 -8 2 1424 621 0 0 0 chr4 110022755 110022824 -45607296 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1424 270 302 8 8 chr4 110025877 110025997 -45604123 + L1ME4a LINE L1 5787 5906 -218 3 1424 216 209 0 23 chr4 110026464 110026508 -45603612 - MIRm SINE MIR -155 121 79 3 1424 7403 50 0 2 chr4 110026575 110027489 -45602631 + L1Md_F2 LINE L1 5671 6582 0 3 1424 233 355 55 16 chr4 110027574 110027731 -45602389 + MIR SINE MIR 4 174 -102 3 1424 23 0 0 0 chr4 110028472 110028495 -45601625 + AT_rich Low_complexity Low_complexity 1 23 0 3 1424 252 289 141 22 chr4 110028994 110029086 -45601034 + MIRb SINE MIR 86 188 -80 3 1424 1069 255 169 34 chr4 110030240 110030679 -45599441 - RMER5 LTR ERV1 0 534 37 3 1424 220 200 0 0 chr4 110030908 110030948 -45599172 + T-rich Low_complexity Low_complexity 3 42 0 3 1424 432 243 35 35 chr4 110031341 110031352 -45598768 - Lx9 LINE L1 -167 7477 7468 3 1424 336 48 0 0 chr4 110031352 110031394 -45598726 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1424 432 243 35 35 chr4 110031394 110031527 -45598593 - Lx9 LINE L1 -177 7467 7333 3 1424 326 280 77 11 chr4 110031533 110031663 -45598457 + MLT1J LTR MaLR 13 149 -400 4 1424 434 318 43 72 chr4 110031698 110031905 -45598215 + MLT1J LTR MaLR 299 499 -13 4 1424 288 0 0 0 chr4 110032657 110032689 -45597431 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1424 340 273 52 0 chr4 110033031 110033108 -45597012 + B1F1 SINE Alu 1 81 -68 4 1424 267 356 0 65 chr4 110033108 110033139 -45596981 + B4A SINE B4 86 186 -106 4 1424 246 371 11 43 chr4 110034219 110034312 -45595808 - RSINE1 SINE B4 -2 163 74 4 1424 473 0 18 0 chr4 110034955 110035012 -45595108 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1424 238 264 0 54 chr4 110035045 110035137 -45594983 - L1_Mur3 LINE L1 -1097 4783 4697 4 1424 394 266 7 133 chr4 110035162 110035193 -45594927 + MTE2b LTR MaLR 18 47 -332 4 1424 678 25 0 0 chr4 110035193 110035273 -45594847 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 1424 394 266 7 133 chr4 110035273 110035384 -45594736 + MTE2b LTR MaLR 48 142 -237 4 1424 555 343 87 14 chr4 110035305 110035524 -45594596 + MT2A LTR ERVL 63 297 -236 5 1424 1019 264 73 7 chr4 110035526 110035801 -45594319 + MT2A LTR ERVL 233 525 -8 5 1424 1020 277 70 46 chr4 110035836 110036204 -45593916 + MTE2a LTR MaLR 1 378 -1 5 1424 1565 283 73 12 chr4 110036216 110036747 -45593373 + L1M3 LINE L1 3838 4414 -1726 5 1424 444 118 0 0 chr4 110036747 110036815 -45593305 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1424 1565 283 73 12 chr4 110036815 110037080 -45593040 + L1M3 LINE L1 4415 4681 -1459 5 1424 315 265 29 48 chr4 110037082 110037185 -45592935 - MIR SINE MIR -56 206 106 5 1424 657 275 32 63 chr4 110037228 110037480 -45592640 + MIR SINE MIR 19 262 0 5 1424 4125 174 45 2 chr4 110038099 110039096 -45591024 + Lx2B LINE L1 5892 6986 -11 5 1424 346 355 35 28 chr4 110039541 110039683 -45590437 - MIRc SINE MIR -123 145 3 5 1424 3185 168 31 4 chr4 110040691 110041566 -45588554 - Lx4B LINE L1 -926 6132 5222 5 1424 2622 240 13 71 chr4 110041561 110042414 -45587706 + Lx2B LINE L1 6142 7058 0 6 1424 642 289 111 88 chr4 110042503 110042870 -45587250 + L1MC3 LINE L1 7120 7482 -303 6 1424 618 39 0 0 chr4 110042870 110042947 -45587173 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1424 642 289 111 88 chr4 110042947 110043191 -45586929 + L1MC3 LINE L1 7483 7745 -40 6 1424 191 361 67 40 chr4 110043296 110043446 -45586674 - MIRc SINE MIR -4 264 111 6 1424 645 157 17 9 chr4 110044564 110044680 -45585440 - PB1D9 SINE Alu 0 120 4 6 1424 532 339 144 23 chr4 110045124 110045553 -45584567 - L2a LINE L2 -36 3390 2910 6 1424 227 323 83 0 chr4 110045790 110045923 -45584197 - Charlie13a DNA Charlie -248 1266 1123 6 1424 1144 297 58 68 chr4 110046175 110046810 -45583310 - Charlie13a DNA Charlie -820 694 66 6 1424 447 19 0 0 chr4 110047051 110047103 -45583017 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1424 608 278 45 45 chr4 110047272 110047472 -45582648 + B4A SINE B4 3 202 -90 6 1424 458 17 0 17 chr4 110047479 110047539 -45582581 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1424 432 0 0 0 chr4 110047608 110047656 -45582464 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1424 280 359 58 53 chr4 110048602 110048808 -45581312 + MIRb SINE MIR 25 231 -37 7 1424 2219 19 4 0 chr4 110048825 110049088 -45581032 - MTA_Mm LTR MaLR -132 264 1 7 1424 574 231 18 128 chr4 110049229 110049393 -45580727 - MTE2b LTR MaLR -233 146 1 7 1424 311 236 153 13 chr4 110049395 110049545 -45580575 - L1M2 LINE L1 -1327 4816 4646 7 1424 316 318 45 0 chr4 110049560 110049648 -45580472 - B1F SINE Alu -51 98 7 7 1424 311 213 117 100 chr4 110049664 110049784 -45580336 - L1M2 LINE L1 -1511 4632 4511 7 1424 387 350 129 46 chr4 110049876 110050202 -45579918 - MT2A LTR ERVL -63 470 118 7 1424 427 192 65 32 chr4 110050267 110050391 -45579729 - MTE-int LTR MaLR -82 1498 1371 7 1424 1395 299 75 32 chr4 110050399 110051056 -45579064 - Lx8 LINE L1 -31 7442 6758 7 1424 13184 124 22 5 chr4 110051123 110054446 -45575674 - Lx4A LINE L1 0 7058 3668 7 1424 5127 176 18 23 chr4 110054446 110055353 -45574767 + RMER19B LTR ERVK 1 902 0 8 1424 1265 98 33 129 chr4 110055355 110055626 -45574494 - Lx4A LINE L1 -2206 3671 3427 7 1424 462 17 0 0 chr4 110055673 110055733 -45574387 - L1Md_F3 LINE L1 -515 6069 6010 8 1424 2790 48 8 0 chr4 110055730 110056087 -45574033 + L1Md_F3 LINE L1 6074 6433 -151 8 1424 330 370 28 69 chr4 110056091 110056236 -45573884 + B3A SINE B2 28 166 -32 8 1424 263 250 158 0 chr4 110056246 110056322 -45573798 - MTE-int LTR MaLR -706 874 787 7 1424 468 0 0 0 chr4 110056333 110056385 -45573735 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1424 552 111 0 0 chr4 110056385 110056474 -45573646 + (CA)n Simple_repeat Simple_repeat 1 90 0 8 1424 1252 303 66 6 chr4 110056476 110056838 -45573282 - MTE-int LTR MaLR -221 1359 976 8 1424 245 200 20 20 chr4 110056975 110057026 -45573094 - MTE-int LTR MaLR -828 752 702 8 1424 2639 190 25 2 chr4 110057059 110057545 -45572575 - Lx5 LINE L1 -1 7049 6553 8 1424 180 0 0 0 chr4 110057642 110057662 -45572458 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1424 517 328 120 44 chr4 110057788 110057953 -45572167 - MLT1A0 LTR MaLR -22 343 170 8 1424 3679 109 35 2 chr4 110057953 110058496 -45571624 + L1_Mus3 LINE L1 6078 6638 0 8 1424 517 328 120 44 chr4 110058496 110058646 -45571474 - MLT1A0 LTR MaLR -196 169 4 8 1424 261 0 0 0 chr4 110058954 110058983 -45571137 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 9 1424 758 156 156 0 chr4 110058983 110059118 -45571002 - B2_Mm2 SINE B2 -38 157 2 9 1424 573 149 8 0 chr4 110059184 110059305 -45570815 - RMER17B LTR ERVK -498 460 339 9 1424 249 259 223 7 chr4 110059305 110059453 -45570667 - L1MD LINE L1 -738 5436 5257 9 1424 560 248 0 42 chr4 110059588 110059731 -45570389 - B1F SINE Alu -8 141 5 9 1424 438 298 74 14 chr4 110059912 110060285 -45569835 - L1MD LINE L1 -1163 4983 4583 9 1424 377 318 52 0 chr4 110060290 110060463 -45569657 + MER3 DNA MER1_type 9 190 -19 9 1424 436 287 62 8 chr4 110060790 110060920 -45569200 + B1F2 SINE Alu 7 143 -6 9 1424 317 227 91 0 chr4 110060924 110060990 -45569130 + ID4 SINE ID 1 72 -11 9 1424 275 65 22 0 chr4 110060991 110061037 -45569083 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1424 396 315 70 11 chr4 110061065 110061251 -45568869 - L1MD LINE L1 -1647 4499 4303 9 1424 4201 136 3 10 chr4 110061261 110061967 -45568153 + L1_Mur2 LINE L1 3276 3976 -1901 9 1424 260 274 9 26 chr4 110062054 110062170 -45567950 - L1MD LINE L1 -1897 4249 4136 1 1424 1048 380 22 24 chr4 110062225 110062683 -45567437 - LTR53 LTR ERVL 0 519 63 1 1424 313 260 128 16 chr4 110062841 110062966 -45567154 - MLT1A1 LTR MaLR 0 408 270 1 1424 33 25 0 0 chr4 110063032 110063072 -45567048 + AT_rich Low_complexity Low_complexity 1 40 0 1 1424 2517 195 62 0 chr4 110063271 110063633 -45566487 + RMER1A Other Other 511 873 -157 1 1424 237 65 0 0 chr4 110063633 110063664 -45566456 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1424 2517 195 62 0 chr4 110063664 110063788 -45566332 + RMER1A Other Other 874 1026 -4 1 1424 323 308 19 0 chr4 110063838 110063942 -45566178 - Lx7 LINE L1 -391 7305 7200 1 1424 497 30 30 0 chr4 110064002 110064068 -45566052 + (CTCA)n Simple_repeat Simple_repeat 3 70 0 1 1424 4325 211 73 10 chr4 110064088 110064986 -45565134 - Lx6 LINE L1 -182 7278 6324 1 1424 327 339 100 31 chr4 110065146 110065344 -45564776 - MER74B LTR ERVL -257 365 111 1 1424 556 286 43 12 chr4 110065914 110066077 -45564043 + ORR1E LTR MaLR 1 168 -191 1 1424 1107 327 83 60 chr4 110066084 110066558 -45563562 + Lx8 LINE L1 4826 5334 -513 1 1424 1150 61 0 20 chr4 110066558 110066708 -45563412 + B1_Mus2 SINE Alu 1 147 0 1 1424 1107 316 82 47 chr4 110066708 110067258 -45562862 + Lx8 LINE L1 5335 5906 -1567 1 1424 246 234 26 13 chr4 110067276 110067354 -45562766 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1424 561 30 0 0 chr4 110067480 110067547 -45562573 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1424 2950 44 3 3 chr4 110067850 110068217 -45561903 - L1Md_F2 LINE L1 0 6582 6216 1 1424 21 0 0 0 chr4 110068395 110068416 -45561704 + AT_rich Low_complexity Low_complexity 1 21 0 1 1424 535 300 0 28 chr4 110068940 110069084 -45561036 + MER3 DNA MER1_type 7 146 -63 1 1424 195 324 0 51 chr4 110069266 110069344 -45560776 - MIRb SINE MIR -85 183 110 1 1424 360 0 0 0 chr4 110071548 110071588 -45558532 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1424 221 358 135 22 chr4 110072063 110072444 -45557676 - L2b LINE L2 -238 3137 2704 1 1424 309 307 295 25 chr4 110072501 110072948 -45557172 - L2b LINE L2 -865 2554 1987 1 1424 2727 218 72 62 chr4 110073348 110073565 -45556555 + Lx9 LINE L1 5955 6302 -1342 1 1424 537 30 0 0 chr4 110073565 110073632 -45556488 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1424 2727 232 101 29 chr4 110073632 110074215 -45555905 + Lx9 LINE L1 6303 6914 -730 1 1424 2345 57 3 0 chr4 110074216 110074514 -45555606 + L1Md_F2 LINE L1 5707 6005 -577 1 1424 2643 173 117 41 chr4 110074489 110074993 -45555127 + Lx9 LINE L1 6962 7497 -147 1 1424 303 93 0 0 chr4 110074993 110075036 -45555084 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1424 2643 173 117 41 chr4 110075036 110075165 -45554955 + Lx9 LINE L1 7498 7642 -2 1 1424 21 57 0 0 chr4 110075660 110075695 -45554425 + AT_rich Low_complexity Low_complexity 1 35 0 1 1424 23 33 0 0 chr4 110075808 110075838 -45554282 + AT_rich Low_complexity Low_complexity 1 30 0 1 1424 753 262 191 22 chr4 110076795 110077147 -45552973 + MTD LTR MaLR 1 405 -14 1 1424 21 0 0 0 chr4 110077461 110077482 -45552638 + AT_rich Low_complexity Low_complexity 1 21 0 1 1424 366 314 154 19 chr4 110078381 110078531 -45551589 - ORR1E LTR MaLR -11 348 186 1 1424 648 0 0 0 chr4 110078531 110078603 -45551517 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1424 366 314 154 19 chr4 110078603 110078660 -45551460 - ORR1E LTR MaLR -174 185 114 1 1424 1851 228 78 38 chr4 110078668 110079193 -45550927 - RMER15 LTR ERVL 0 575 30 1 1424 272 309 49 0 chr4 110079341 110079422 -45550698 - MLT1A1 LTR MaLR -270 138 54 1 1424 367 219 62 111 chr4 110079655 110079799 -45550321 - MER33 DNA MER1_type -4 320 184 1 1424 228 365 58 0 chr4 110080686 110080790 -45549330 - MIRb SINE MIR -122 146 37 1 1424 29 78 0 0 chr4 110081102 110081166 -45548954 + AT_rich Low_complexity Low_complexity 1 64 0 1 1424 236 271 12 0 chr4 110081205 110081290 -45548830 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1424 207 0 0 0 chr4 110082145 110082168 -45547952 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1424 346 274 29 10 chr4 110082223 110082326 -45547794 - L1M2 LINE L1 -3010 3835 3731 1 1424 699 239 131 0 chr4 110082393 110082569 -45547551 - B3 SINE B2 -3 213 15 1 1424 740 312 81 47 chr4 110082633 110083128 -45546992 - L1M2 LINE L1 -2867 3715 3208 1 1424 676 310 20 52 chr4 110083226 110083532 -45546588 + Lx8 LINE L1 7103 7398 -75 1 1424 2319 152 77 59 chr4 110083541 110084051 -45546069 - RLTR11A2 LTR ERVK -8 519 1 1 1424 530 54 14 0 chr4 110084212 110084286 -45545834 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 1424 271 346 53 10 chr4 110084291 110084498 -45545622 - L1M2 LINE L1 -4341 2508 2293 1 1424 33223 52 2 11 chr4 110085360 110086435 -45543685 - L1Md_F2 LINE L1 -1 6581 5523 1 1424 3284 52 33 7 chr4 110086435 110086860 -45543260 + RLTR10C LTR ERVK 1 436 0 1 1424 33223 105 24 23 chr4 110086860 110092152 -45537968 - L1Md_F2 LINE L1 -361 5522 218 1 1424 1148 308 120 21 chr4 110092851 110092971 -45537149 - Lx8 LINE L1 -16 7457 7316 1 1424 464 0 18 0 chr4 110092971 110093027 -45537093 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1424 1148 308 120 21 chr4 110093027 110093424 -45536696 - Lx8 LINE L1 -158 7315 6891 1 1424 6847 107 35 5 chr4 110093802 110095222 -45534898 + L1_Mus3 LINE L1 5176 6637 -1 1 1424 26 0 0 0 chr4 110095392 110095418 -45534702 + AT_rich Low_complexity Low_complexity 1 26 0 1 1424 1673 169 15 155 chr4 110096201 110096613 -45533507 - ORR1B1 LTR MaLR 0 394 41 1 1424 945 236 16 0 chr4 110096825 110097016 -45533104 + Lx6 LINE L1 6182 6375 -1085 1 1424 291 305 73 0 chr4 110097016 110097098 -45533022 + ID_B1 SINE B4 129 216 -8 1 1424 194 241 193 11 chr4 110097277 110097365 -45532755 - MIR SINE MIR -58 204 101 1 1424 391 250 13 0 chr4 110097441 110097517 -45532603 - B1F1 SINE Alu -59 90 14 1 1424 250 313 9 92 chr4 110097517 110097546 -45532574 - ID_B1 SINE B4 -55 165 70 1 1424 2010 158 0 3 chr4 110097581 110097893 -45532227 - RLTR10E LTR ERVK 0 311 1 1 1424 810 257 121 49 chr4 110097895 110098283 -45531837 + L1MB2 LINE L1 5663 6078 -93 1 1424 376 372 22 0 chr4 110098252 110098478 -45531642 + HAL1 LINE L1 1515 1745 -762 1 1424 182 350 62 0 chr4 110099541 110099621 -45530499 - MIRm SINE MIR -150 126 42 1 1425 22 56 0 0 chr4 110100640 110100676 -45529444 + AT_rich Low_complexity Low_complexity 1 36 0 1 1425 522 250 79 16 chr4 110100764 110100890 -45529230 - ID_B1 SINE B4 -8 216 83 1 1425 197 136 288 0 chr4 110101578 110101637 -45528483 + L2a LINE L2 3331 3406 -20 1 1425 324 0 0 0 chr4 110101734 110101770 -45528350 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1425 423 0 0 0 chr4 110101770 110101817 -45528303 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1425 207 0 0 0 chr4 110101817 110101839 -45528281 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1425 228 367 41 8 chr4 110101960 110102081 -45528039 + MER3 DNA MER1_type 15 139 -70 1 1425 380 297 136 11 chr4 110102395 110102579 -45527541 + MIRb SINE MIR 53 259 -3 1 1425 1499 212 122 8 chr4 110103048 110103433 -45526687 + L1_Mur3 LINE L1 5442 5870 -10 1 1425 537 241 7 14 chr4 110103425 110103440 -45526680 + Lx7 LINE L1 5691 5705 -474 1 1425 5797 73 33 0 chr4 110103440 110104223 -45525897 - L1_Mus4 LINE L1 -6 6630 5822 1 1425 3767 300 75 19 chr4 110104223 110104736 -45525384 + Lx7 LINE L1 5679 6262 -1211 1 1425 306 0 0 0 chr4 110104736 110104770 -45525350 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1425 3767 296 71 17 chr4 110104770 110105832 -45524288 + Lx7 LINE L1 6262 7365 -331 1 1425 215 189 0 19 chr4 110105895 110105949 -45524171 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1 1425 27 29 0 0 chr4 110106234 110106268 -45523852 + AT_rich Low_complexity Low_complexity 1 34 0 1 1425 405 0 0 0 chr4 110106441 110106486 -45523634 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1425 505 28 14 14 chr4 110106486 110106557 -45523563 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1425 214 213 16 16 chr4 110106568 110106630 -45523490 + A-rich Low_complexity Low_complexity 3 64 0 1 1425 1152 88 0 0 chr4 110106657 110106805 -45523315 + B1_Mus1 SINE Alu 1 148 0 1 1425 373 159 1 52 chr4 110106805 110106908 -45523212 + L1_Mur2 LINE L1 4421 4529 -1357 1 1425 4129 65 2 2 chr4 110106913 110107439 -45522681 + L1_Mus1 LINE L1 6042 6567 0 1 1425 396 289 136 61 chr4 110107448 110107718 -45522402 + L1MA10 LINE L1 5769 6082 -252 1 1425 504 0 0 0 chr4 110107718 110107774 -45522346 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1425 396 289 136 61 chr4 110107774 110108027 -45522093 + L1MA10 LINE L1 6083 6331 -3 1 1425 319 382 116 31 chr4 110108252 110108579 -45521541 - MLT1J LTR MaLR -79 433 79 1 1425 348 295 107 24 chr4 110109052 110109257 -45520863 - L1M3e LINE L1 -6790 240 19 1 1425 250 343 93 53 chr4 110109520 110109766 -45520354 - MIR SINE MIR -1 261 6 1 1425 21 0 0 0 chr4 110109947 110109968 -45520152 + AT_rich Low_complexity Low_complexity 1 21 0 1 1425 732 354 56 28 chr4 110110232 110110482 -45519638 - MTE-int LTR MaLR -431 1149 893 1 1425 251 143 0 0 chr4 110110643 110110685 -45519435 - Ricksha_c DNA MuDR -1602 446 405 1 1425 22 0 0 0 chr4 110110705 110110727 -45519393 + AT_rich Low_complexity Low_complexity 1 22 0 1 1425 436 304 45 53 chr4 110110742 110110874 -45519246 - RSINE1 SINE B4 0 165 35 1 1425 1742 38 0 0 chr4 110111532 110111743 -45518377 - L1Md_T LINE L1 0 6582 6372 1 1425 1227 179 162 18 chr4 110112180 110112464 -45517656 - MTD LTR MaLR -12 407 83 1 1425 1212 204 23 90 chr4 110112497 110112842 -45517278 - MTC-int LTR MaLR 0 1258 937 1 1425 1428 273 57 57 chr4 110112891 110114018 -45516102 + L1M2 LINE L1 2347 3473 -2670 1 1425 183 42 0 0 chr4 110114021 110114045 -45516075 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 1 1425 1607 246 80 14 chr4 110114080 110114493 -45515627 + Lx6 LINE L1 6995 7434 -26 1 1425 867 261 34 4 chr4 110114513 110114775 -45515345 + L1M2 LINE L1 3526 3795 -2348 1 1425 619 302 45 32 chr4 110114800 110115289 -45514831 + L1M2 LINE L1 5156 5617 -263 1 1425 252 0 0 0 chr4 110115962 110115990 -45514130 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1425 234 0 0 0 chr4 110116065 110116091 -45514029 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1425 464 324 96 37 chr4 110116091 110116720 -45513400 + L1M2 LINE L1 2010 2631 -3918 1 1425 2941 177 39 37 chr4 110116875 110117498 -45512622 - Lx5 LINE L1 -3 7047 6424 1 1425 4147 143 48 35 chr4 110117593 110118667 -45511453 - Lx5 LINE L1 -598 6452 5333 1 1425 2972 67 0 0 chr4 110118667 110119054 -45511066 - L1Md_T LINE L1 0 6582 6196 1 1425 3509 137 20 28 chr4 110119054 110119124 -45510996 - Lx5 LINE L1 -545 5332 5264 1 1425 351 342 54 128 chr4 110119965 110120223 -45509897 + B4A SINE B4 5 243 -49 2 1425 675 212 8 8 chr4 110120359 110120492 -45509628 - MTD LTR MaLR -286 133 1 2 1425 320 333 93 28 chr4 110120493 110120601 -45509519 + RSINE1 SINE B4 6 120 -45 2 1425 344 269 0 0 chr4 110120601 110120687 -45509433 + L1_Mur3 LINE L1 5478 5563 -320 2 1425 313 299 140 14 chr4 110120859 110121073 -45509047 - L1MEc LINE L1 -5619 781 541 2 1425 8568 25 0 0 chr4 110121158 110122295 -45507825 - L1Md_T LINE L1 -1 6581 5445 2 1425 1435 241 89 16 chr4 110122406 110122786 -45507334 + MTD LTR MaLR 1 408 -11 2 1425 187 214 48 0 chr4 110123205 110123247 -45506873 + MIR SINE MIR 219 262 0 2 1425 339 346 81 32 chr4 110123692 110123877 -45506243 + MIR SINE MIR 39 232 -36 2 1425 5377 94 11 3 chr4 110124175 110124932 -45505188 - L1Md_F2 LINE L1 0 6582 5820 2 1425 4176 58 0 4 chr4 110124932 110125456 -45504664 + L1Md_F2 LINE L1 5331 5852 -31 2 1425 207 0 0 0 chr4 110126040 110126063 -45504057 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1425 1184 55 0 0 chr4 110126067 110126213 -45503907 - B1_Mus1 SINE Alu 0 148 3 2 1425 461 294 32 32 chr4 110126352 110126542 -45503578 - L1MC1 LINE L1 -83 6250 6061 2 1425 240 272 32 8 chr4 110126640 110126766 -45503354 - L1M2 LINE L1 -2914 3229 3101 2 1425 3079 87 9 14 chr4 110126836 110127264 -45502856 + Lx3A LINE L1 6536 6965 -16 2 1425 297 0 0 0 chr4 110127264 110127297 -45502823 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1425 3079 87 9 14 chr4 110127297 110127312 -45502808 + Lx3A LINE L1 6966 6977 -4 2 1425 354 308 86 18 chr4 110127366 110127813 -45502307 + L1_Rod LINE L1 5278 5798 -493 2 1425 22 0 0 0 chr4 110127996 110128018 -45502102 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 950 118 12 17 chr4 110128022 110128195 -45501925 + Lx3A LINE L1 6808 6979 -2 2 1425 2683 94 8 15 chr4 110128648 110129049 -45501071 - L1_Mus3 LINE L1 -11 6627 6230 2 1425 512 99 0 0 chr4 110129108 110129179 -45500941 - ORR1B1 LTR MaLR 0 394 324 2 1425 974 258 48 8 chr4 110129186 110129436 -45500684 - Lx6 LINE L1 -572 6888 6629 2 1425 1956 274 2 11 chr4 110129437 110129895 -45500225 + Lx5 LINE L1 6597 7050 0 2 1425 1335 194 91 7 chr4 110129925 110130211 -45499909 - ORR1B2 LTR MaLR -57 310 1 2 1425 229 211 0 0 chr4 110130243 110130295 -45499825 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1425 194 294 27 0 chr4 110130806 110130873 -45499247 + L2a LINE L2 3291 3393 -33 2 1425 21 36 0 0 chr4 110131294 110131322 -45498798 + AT_rich Low_complexity Low_complexity 1 28 0 2 1425 437 307 0 50 chr4 110132125 110132245 -45497875 + PB1D10 SINE Alu 1 114 -3 2 1425 658 219 28 35 chr4 110132258 110132400 -45497720 + B1_Mur1 SINE Alu 9 149 0 2 1425 1404 73 10 5 chr4 110132405 110132597 -45497523 + B2_Mm1t SINE B2 1 193 0 2 1425 243 0 0 0 chr4 110132878 110132905 -45497215 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1425 22 0 0 0 chr4 110133352 110133374 -45496746 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 7372 189 98 36 chr4 110134146 110136904 -45493216 - Lx5 LINE L1 -3 7047 4094 2 1425 929 166 11 0 chr4 110136902 110137077 -45493043 + L1_Mur2 LINE L1 3564 3740 -2137 2 1425 253 279 57 19 chr4 110137077 110137183 -45492937 + MTEa LTR MaLR 270 379 0 2 1425 255 359 31 20 chr4 110137736 110137905 -45492215 - L2c LINE L2 -156 3231 3059 2 1425 318 355 103 26 chr4 110137960 110138194 -45491926 - MER20B DNA MER1_type -351 432 181 2 1425 560 275 73 24 chr4 110138462 110138667 -45491453 - Tigger1 DNA MER2_type -188 2230 2016 2 1425 245 336 65 0 chr4 110138669 110138776 -45491344 + PB1D10 SINE Alu 4 117 0 2 1425 300 281 43 142 chr4 110138804 110138965 -45491155 - Tigger1 DNA MER2_type -387 2031 1885 2 1425 608 210 63 16 chr4 110138965 110139091 -45491029 + B1_Mur2 SINE Alu 3 134 -15 2 1425 199 0 65 0 chr4 110139091 110139122 -45490998 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1425 300 281 43 142 chr4 110139122 110139241 -45490879 - Tigger1 DNA MER2_type -534 1884 1779 2 1425 244 270 40 13 chr4 110139237 110139312 -45490808 - MTD LTR MaLR -306 113 37 2 1425 243 0 0 0 chr4 110139376 110139403 -45490717 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1425 31 0 0 0 chr4 110139410 110139441 -45490679 + AT_rich Low_complexity Low_complexity 1 31 0 2 1425 1039 85 35 0 chr4 110139441 110139582 -45490538 - B1_Mus2 SINE Alu 0 147 2 2 1425 22 0 0 0 chr4 110139630 110139652 -45490468 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 1128 268 60 0 chr4 110139678 110139977 -45490143 - MTD LTR MaLR 0 419 103 2 1425 343 22 0 0 chr4 110139977 110140023 -45490097 + Lx2 LINE L1 6599 6644 -356 2 1425 851 102 8 0 chr4 110140012 110140139 -45489981 + Lx2 LINE L1 6765 6892 -105 2 1425 7516 95 47 2 chr4 110140136 110141880 -45488240 - L1_Mus3 LINE L1 -48 6590 4770 2 1425 340 327 121 38 chr4 110141902 110142166 -45487954 - L1MCc LINE L1 -5082 1341 1056 2 1425 41193 5 0 0 chr4 110142172 110148749 -45481371 - L1Md_A LINE L1 0 6582 7 2 1425 531 279 58 58 chr4 110148819 110149035 -45481085 - B3A SINE B2 -11 205 1 2 1425 1055 89 0 20 chr4 110149785 110149934 -45480186 - B1_Mm SINE Alu -1 146 1 2 1425 2722 182 36 41 chr4 110150221 110150806 -45479314 - RMER4B LTR ERVK -3 582 1 2 1425 725 343 99 26 chr4 110152161 110152583 -45477537 - MLT1C LTR MaLR 0 467 15 2 1425 1166 128 0 0 chr4 110153223 110153402 -45476718 + L1_Mus3 LINE L1 6457 6635 -3 2 1425 201 380 0 0 chr4 110153536 110153615 -45476505 - L4 LINE RTE -499 1530 1452 2 1425 315 232 0 0 chr4 110153703 110153759 -45476361 + RMER30 DNA MER1_type 1 56 -146 2 1425 708 189 192 10 chr4 110153764 110153967 -45476153 - Lx9 LINE L1 -521 7123 6884 2 1425 297 206 5 0 chr4 110153991 110154077 -45476043 - L1M2 LINE L1 -2352 3788 3700 2 1425 1021 253 22 18 chr4 110154595 110154873 -45475247 + L1_Mur3 LINE L1 5530 5808 -72 2 1425 492 105 0 0 chr4 110155137 110155213 -45474907 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1425 2739 10 0 0 chr4 110155309 110155618 -45474502 - L1Md_A LINE L1 0 6582 6274 2 1425 262 381 21 14 chr4 110155757 110155898 -45474222 + MLT1C LTR MaLR 135 276 -191 2 1425 982 255 0 0 chr4 110156563 110156771 -45473349 + B3 SINE B2 1 208 -8 2 1425 632 316 113 38 chr4 110157318 110157637 -45472483 - MLT1A0 LTR MaLR -10 355 13 2 1425 944 279 74 10 chr4 110158025 110158377 -45471743 - Lx8 LINE L1 -836 5304 4925 2 1425 1001 300 139 25 chr4 110158375 110159358 -45470762 + Lx8 LINE L1 5398 6506 -967 2 1425 319 321 144 33 chr4 110159427 110159523 -45470597 - Lx7 LINE L1 0 7473 7357 2 1425 231 36 0 0 chr4 110159523 110159551 -45470569 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 2 1425 375 313 44 29 chr4 110159551 110159726 -45470394 - Lx7 LINE L1 -117 7356 7160 2 1425 41184 5 2 0 chr4 110159791 110166355 -45463765 - L1Md_A LINE L1 0 6582 6 2 1425 280 164 15 15 chr4 110166568 110166636 -45463484 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1425 22 0 0 0 chr4 110166916 110166938 -45463182 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 774 140 50 84 chr4 110166938 110167117 -45463003 - RMER1B Other Other -9 1057 885 2 1425 556 209 0 0 chr4 110167133 110167238 -45462882 + RMER1B Other Other 537 641 -425 2 1425 3604 295 108 32 chr4 110167895 110169772 -45460348 + L1MA4A LINE L1 2577 4635 -1508 2 1425 318 26 0 0 chr4 110169772 110169811 -45460309 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2 1425 3604 282 94 39 chr4 110169811 110170641 -45459479 + L1MA4A LINE L1 4636 5482 -818 2 1425 230 333 109 16 chr4 110170639 110170767 -45459353 + Lx8 LINE L1 7189 7328 -145 2 1425 1058 298 44 9 chr4 110170986 110171417 -45458703 + L1MA4A LINE L1 5487 5932 -371 2 1425 360 94 0 0 chr4 110171478 110171531 -45458589 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1425 23 0 0 0 chr4 110171773 110171796 -45458324 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 5539 54 1 0 chr4 110172392 110173100 -45457020 - L1Md_F2 LINE L1 0 6582 5877 2 1425 36616 32 1 7 chr4 110173150 110178343 -45451777 + L1Md_T LINE L1 433 5586 -297 2 1425 8220 40 2 1 chr4 110178343 110179338 -45450782 + L1Md_T LINE L1 5587 6582 0 2 1425 310 304 147 37 chr4 110179371 110179562 -45450558 - MIRb SINE MIR -32 236 25 2 1425 886 242 37 4 chr4 110179677 110179918 -45450202 + Lx4B LINE L1 6793 7041 -17 2 1425 716 22 11 0 chr4 110179920 110180010 -45450110 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 2 1425 386 200 62 21 chr4 110180026 110180123 -45449997 + B1_Mur4 SINE Alu 49 149 -1 2 1425 368 273 34 82 chr4 110180176 110180356 -45449764 + MLT2B4 LTR ERVL 1 191 -329 2 1425 246 287 97 62 chr4 110180362 110180507 -45449613 + MLT2B4 LTR ERVL 392 541 -15 2 1425 21 0 0 0 chr4 110181618 110181639 -45448481 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 584 305 14 14 chr4 110182269 110182444 -45447676 - B3A SINE B2 -3 213 44 2 1425 540 243 145 11 chr4 110182438 110182617 -45447503 - RCHARR1 DNA MER1_type -250 724 522 2 1425 1622 263 89 8 chr4 110182959 110183454 -45446666 - RCHARR1 DNA MER1_type -432 542 8 2 1425 986 278 104 24 chr4 110183644 110184057 -45446063 - Lx9 LINE L1 -16 7628 7183 2 1425 23 78 0 0 chr4 110184373 110184424 -45445696 + AT_rich Low_complexity Low_complexity 1 51 0 2 1425 524 116 12 0 chr4 110185282 110185368 -45444752 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1425 251 221 143 0 chr4 110186422 110186499 -45443621 - B1_Mur4 SINE Alu -5 145 58 2 1425 434 191 0 0 chr4 110186497 110186565 -45443555 + PB1D9 SINE Alu 3 70 -50 2 1425 21 57 0 0 chr4 110186977 110187012 -45443108 + AT_rich Low_complexity Low_complexity 1 35 0 2 1425 215 170 19 19 chr4 110187286 110187333 -45442787 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1425 405 0 0 0 chr4 110187333 110187378 -45442742 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 2 1425 215 170 19 19 chr4 110187378 110187384 -45442736 + (CA)n Simple_repeat Simple_repeat 1 6 0 2 1425 544 238 127 0 chr4 110187945 110188134 -45441986 - L1MA5A LINE L1 -393 5904 5692 2 1425 23 0 0 0 chr4 110188602 110188625 -45441495 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 442 335 87 56 chr4 110188701 110188989 -45441131 + MTEa LTR MaLR 83 379 0 3 1425 232 277 48 0 chr4 110188994 110189077 -45441043 - L1MB1 LINE L1 -38 6151 6065 3 1425 21 57 0 0 chr4 110189093 110189128 -45440992 + AT_rich Low_complexity Low_complexity 1 35 0 3 1425 1700 207 61 2 chr4 110189143 110189550 -45440570 - Lx9 LINE L1 -1 7643 7213 3 1425 298 349 8 0 chr4 110190297 110190423 -45439697 + (TG)n Simple_repeat Simple_repeat 2 128 0 3 1425 223 372 31 47 chr4 110190501 110190628 -45439492 - B4 SINE B4 -163 129 5 3 1425 9305 91 26 11 chr4 110191099 110193106 -45437014 + L1Md_F3 LINE L1 446 2470 -3413 3 1425 5289 64 0 0 chr4 110193103 110193778 -45436342 + L1Md_F3 LINE L1 4911 5585 -298 3 1425 7979 44 4 2 chr4 110193779 110194760 -45435360 + L1Md_F3 LINE L1 5587 6569 -15 3 1425 1285 306 136 4 chr4 110195046 110195562 -45434558 - MLT1A0-int LTR MaLR -1150 585 2 3 1425 722 222 112 11 chr4 110195563 110195741 -45434379 - MLT1A0 LTR MaLR 0 365 170 3 1425 321 269 104 19 chr4 110195761 110195867 -45434253 - MTEa LTR MaLR 0 379 265 3 1425 834 149 23 6 chr4 110196067 110196242 -45433878 + GA-rich Low_complexity Low_complexity 1 178 0 3 1425 218 137 58 19 chr4 110196253 110196305 -45433815 + GA-rich Low_complexity Low_complexity 3 56 0 3 1425 328 247 232 16 chr4 110196979 110197164 -45432956 - MIR SINE MIR 0 262 38 3 1425 780 72 0 0 chr4 110197968 110198065 -45432055 + L1Md_F2 LINE L1 5490 5586 -297 3 1425 8068 40 2 22 chr4 110198065 110199081 -45431039 + L1Md_F2 LINE L1 5587 6582 0 3 1425 29 0 0 0 chr4 110199596 110199625 -45430495 + AT_rich Low_complexity Low_complexity 1 29 0 3 1425 21 0 0 0 chr4 110199659 110199680 -45430440 + AT_rich Low_complexity Low_complexity 1 21 0 3 1425 6733 186 39 52 chr4 110199840 110201634 -45428486 - Lx5 LINE L1 -3 7047 5273 3 1425 225 154 0 0 chr4 110201638 110201677 -45428443 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 1425 1006 130 6 25 chr4 110201678 110201836 -45428284 + L1_Mur2 LINE L1 5075 5229 -648 3 1425 264 179 0 0 chr4 110201860 110201916 -45428204 - Lx5 LINE L1 -3026 2851 2796 3 1425 472 172 0 0 chr4 110201916 110202015 -45428105 - Lx5 LINE L1 -3828 2049 1951 3 1425 1834 164 190 7 chr4 110202013 110202584 -45427536 - Lx5 LINE L1 -4302 1575 901 3 1425 21 82 0 0 chr4 110203089 110203138 -45426982 + AT_rich Low_complexity Low_complexity 1 49 0 3 1425 3432 152 10 8 chr4 110203710 110204306 -45425814 - Lx2 LINE L1 0 6997 6401 3 1425 281 305 67 0 chr4 110205177 110205282 -45424838 + Lx7 LINE L1 7067 7178 -518 3 1425 636 14 0 0 chr4 110205341 110205414 -45424706 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1425 198 0 0 0 chr4 110205414 110205436 -45424684 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 3 1425 323 291 93 21 chr4 110205455 110205617 -45424503 + MTEa LTR MaLR 1 255 -124 3 1425 780 11 0 0 chr4 110205617 110205706 -45424414 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 3 1425 443 304 0 10 chr4 110205706 110205822 -45424298 + MTEa LTR MaLR 256 370 -9 3 1425 2959 240 80 26 chr4 110205929 110206700 -45423420 - Lx6 LINE L1 -4 7456 6644 3 1425 1324 254 44 9 chr4 110206713 110207031 -45423089 + Lx6 LINE L1 6288 6616 -844 3 1425 260 268 138 21 chr4 110207053 110207198 -45422922 - L1M LINE L1 -359 5765 5604 3 1425 321 281 68 38 chr4 110207378 110207511 -45422609 - L1M LINE L1 -732 5392 5256 3 1425 29 47 0 0 chr4 110207719 110207762 -45422358 + AT_rich Low_complexity Low_complexity 1 43 0 3 1425 302 182 15 0 chr4 110207778 110207844 -45422276 + (CATA)n Simple_repeat Simple_repeat 4 70 0 3 1425 725 301 0 12 chr4 110207844 110208012 -45422108 - B3A SINE B2 -32 166 1 3 1425 423 0 0 0 chr4 110208130 110208177 -45421943 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1425 955 272 65 32 chr4 110208211 110208549 -45421571 - Lx8 LINE L1 -1060 6413 6065 3 1425 1324 275 64 42 chr4 110208633 110209063 -45421057 - Lx8 LINE L1 -4 5876 5437 3 1425 1440 38 0 0 chr4 110209063 110209300 -45420820 + (TCTA)n Simple_repeat Simple_repeat 1 237 0 3 1425 1324 275 64 42 chr4 110209300 110209510 -45420610 - Lx8 LINE L1 -444 5436 5222 3 1425 4054 75 13 0 chr4 110209514 110210064 -45420056 - L1_Mus3 LINE L1 -6 6632 6076 3 1425 283 281 61 30 chr4 110210127 110210226 -45419894 + MTD LTR MaLR 101 202 -217 3 1425 2345 127 32 0 chr4 110210230 110210609 -45419511 + Lx3A LINE L1 6590 6980 -1 3 1425 351 0 0 0 chr4 110210671 110210710 -45419410 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1425 648 258 45 59 chr4 110210728 110210930 -45419190 + MTD LTR MaLR 221 419 0 3 1425 1860 258 32 17 chr4 110211485 110211954 -45418166 - Lx8 LINE L1 -863 6610 6135 3 1425 1027 55 20 7 chr4 110211954 110212102 -45418018 - L1Md_F2 LINE L1 -12 6570 6421 3 1425 512 338 63 43 chr4 110212102 110212157 -45417963 - Lx7 LINE L1 -1560 6136 6071 3 1425 38 22 0 0 chr4 110213396 110213441 -45416679 + AT_rich Low_complexity Low_complexity 1 45 0 3 1425 237 323 49 29 chr4 110213798 110213900 -45416220 - L2c LINE L2 -16 3371 3268 3 1425 217 401 26 13 chr4 110214277 110214431 -45415689 - MIR SINE MIR -105 157 2 3 1425 404 19 0 19 chr4 110214582 110214636 -45415484 + (TTA)n Simple_repeat Simple_repeat 3 55 0 3 1425 344 182 12 38 chr4 110214944 110215024 -45415096 + L1_Mur3 LINE L1 5366 5443 -437 3 1425 1140 124 0 0 chr4 110215024 110215202 -45414918 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 3 1425 446 63 0 48 chr4 110215209 110215292 -45414828 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 3 1425 275 258 10 10 chr4 110215299 110215397 -45414723 + Lx7 LINE L1 5494 5591 -577 3 1425 242 214 0 0 chr4 110215433 110215475 -45414645 + Lx7 LINE L1 6635 6676 -1020 3 1425 764 253 194 16 chr4 110215489 110215866 -45414254 + Lx8 LINE L1 7000 7443 -30 3 1425 768 262 9 13 chr4 110215906 110216105 -45414015 + Lx7 LINE L1 5589 5793 -498 3 1425 411 145 0 0 chr4 110216105 110216188 -45413932 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 1425 1014 296 29 25 chr4 110216245 110216691 -45413429 + L1MC3 LINE L1 7314 7761 -24 3 1425 852 158 14 0 chr4 110217002 110217148 -45412972 + Lx5 LINE L1 6267 6414 -636 3 1425 2056 174 43 13 chr4 110217148 110217521 -45412599 + Lx5 LINE L1 6664 7047 -3 3 1425 268 225 150 0 chr4 110217573 110217653 -45412467 + L1_Mur3 LINE L1 1627 1718 -4162 3 1425 593 15 0 0 chr4 110217652 110217720 -45412400 - L1Md_F3 LINE L1 -495 6089 6022 3 1425 1431 22 0 6 chr4 110217720 110217899 -45412221 + L1Md_F3 LINE L1 6392 6569 -15 3 1425 1771 139 14 7 chr4 110217904 110218200 -45411920 + L1_Mur3 LINE L1 1707 2004 -3876 3 1425 839 274 60 50 chr4 110218236 110218635 -45411485 - L1MC LINE L1 -651 5682 5280 3 1425 279 324 7 7 chr4 110218870 110219013 -45411107 - L1M4 LINE L1 -972 5174 5032 3 1425 612 242 147 21 chr4 110219025 110219215 -45410905 - B3 SINE B2 -1 215 2 3 1425 541 248 143 28 chr4 110219218 110219434 -45410686 - L1MC LINE L1 -1121 5025 4785 3 1425 915 130 0 0 chr4 110219451 110219597 -45410523 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 3 1425 339 233 29 0 chr4 110219643 110219746 -45410374 + Lx9 LINE L1 7513 7618 -26 3 1425 29 70 0 0 chr4 110220040 110220097 -45410023 + AT_rich Low_complexity Low_complexity 1 57 0 3 1425 879 238 5 5 chr4 110220245 110220448 -45409672 - B3 SINE B2 -10 206 4 3 1425 414 57 0 0 chr4 110220685 110220738 -45409382 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1425 263 349 157 56 chr4 110222051 110222388 -45407732 - L2c LINE L2 -5 3382 3012 3 1425 560 298 35 11 chr4 110223161 110223423 -45406697 - L1MA6 LINE L1 -171 6129 5857 3 1425 777 240 16 21 chr4 110223424 110223611 -45406509 - Lx6 LINE L1 -819 6641 6456 3 1425 467 295 36 6 chr4 110223611 110223778 -45406342 - L1MA6 LINE L1 -434 5866 5695 3 1425 382 93 0 51 chr4 110224036 110224070 -45406050 + (TTCCC)n Simple_repeat Simple_repeat 1 30 0 3 1425 1532 8 0 11 chr4 110224070 110224436 -45405684 + (TCTCCC)n Simple_repeat Simple_repeat 1 361 0 3 1425 382 93 0 51 chr4 110224436 110224477 -45405643 + (TTCCC)n Simple_repeat Simple_repeat 5 45 0 3 1425 306 303 89 27 chr4 110224489 110224635 -45405485 - HAL1-3A_ME LINE L1 -419 2439 2285 3 1425 845 126 0 7 chr4 110224635 110224779 -45405341 + (TCTCC)n Simple_repeat Simple_repeat 5 147 0 3 1425 233 219 40 45 chr4 110224837 110225014 -45405106 + CT-rich Low_complexity Low_complexity 5 180 0 3 1425 554 0 24 36 chr4 110224974 110225058 -45405062 + (TTTCC)n Simple_repeat Simple_repeat 5 87 0 3 1425 621 40 0 0 chr4 110225082 110225158 -45404962 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 3 1425 209 259 11 34 chr4 110225366 110225454 -45404666 + A-rich Low_complexity Low_complexity 4 89 0 3 1425 292 268 24 0 chr4 110225468 110225550 -45404570 - Lx7 LINE L1 -415 7281 7198 3 1425 34 42 0 0 chr4 110225561 110225609 -45404511 + AT_rich Low_complexity Low_complexity 1 48 0 3 178 37850 41 2 3 chr4 110225609 110231769 -45398351 - L1Md_T LINE L1 0 6585 337 3 1426 7368 89 13 2 chr4 110231769 110232795 -45397325 - L1_Mus3 LINE L1 -14 6624 5588 3 1426 4523 90 30 0 chr4 110232819 110233450 -45396670 + L1_Mm LINE L1 4923 5572 -311 3 1426 2036 182 77 13 chr4 110233451 110233841 -45396279 + MTC LTR MaLR 3 417 -4 3 1426 238 314 57 24 chr4 110233850 110233974 -45396146 - Lx7 LINE L1 -496 7200 7073 3 1426 310 239 109 0 chr4 110234003 110234095 -45396025 - L1MA6 LINE L1 -595 5702 5601 3 1426 327 171 0 0 chr4 110234111 110234181 -45395939 - Lx5 LINE L1 -3 7047 6978 3 1426 255 290 90 19 chr4 110234210 110234421 -45395699 - L1MA6 LINE L1 -2789 3354 3129 3 1426 388 392 61 4 chr4 110234861 110235125 -45394995 - LTR33 LTR ERVL -2 513 235 3 1426 354 45 0 0 chr4 110236450 110236494 -45393626 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1426 898 111 26 0 chr4 110236494 110236647 -45393473 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 3 1426 375 78 0 0 chr4 110237037 110237088 -45393032 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1426 1120 71 0 0 chr4 110237090 110237230 -45392890 - B1_Mm SINE Alu -7 140 1 3 1426 23 33 0 0 chr4 110237412 110237442 -45392678 + AT_rich Low_complexity Low_complexity 1 30 0 3 1426 1364 236 35 55 chr4 110237933 110238445 -45391675 - L1_Rod LINE L1 -401 5446 4945 3 1426 311 296 12 0 chr4 110238524 110238605 -45391515 - MER44D DNA MER2_type -570 135 54 3 1426 286 241 36 0 chr4 110238739 110238822 -45391298 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1426 316 323 10 77 chr4 110238972 110239076 -45391044 - ID_B1 SINE B4 -127 97 1 3 1426 26 0 0 0 chr4 110239315 110239341 -45390779 + AT_rich Low_complexity Low_complexity 1 26 0 3 1426 1348 346 52 57 chr4 110239343 110239813 -45390307 + Lx8 LINE L1 6540 7015 -458 3 1426 678 255 7 0 chr4 110239813 110239954 -45390166 + B1_Mur2 SINE Alu 1 142 -7 3 1426 308 44 44 0 chr4 110239962 110240007 -45390113 + (CAAT)n Simple_repeat Simple_repeat 4 50 0 3 1426 1348 346 52 57 chr4 110240007 110240464 -45389656 + Lx8 LINE L1 7016 7472 -1 3 1426 1845 69 4 4 chr4 110240698 110240946 -45389174 - L1_Mus2 LINE L1 0 6566 6319 3 1426 414 0 0 0 chr4 110241675 110241721 -45388399 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1426 504 0 0 0 chr4 110241721 110241776 -45388344 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1426 270 0 0 0 chr4 110241862 110241892 -45388228 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1426 248 120 20 0 chr4 110242116 110242166 -45387954 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4 1426 478 165 51 10 chr4 110242167 110242265 -45387855 - Lx9 LINE L1 -620 7024 6923 4 1426 1905 200 145 4 chr4 110242296 110242798 -45387322 + Lx9 LINE L1 7072 7644 0 4 1426 567 326 74 97 chr4 110242824 110243123 -45386997 + B4A SINE B4 1 292 0 4 1426 1169 68 7 0 chr4 110243686 110243833 -45386287 - B1_Mus1 SINE Alu 0 148 1 4 1426 4471 64 2 5 chr4 110244742 110245322 -45384798 - L1Md_F2 LINE L1 -195 5688 5111 4 1426 7000 49 22 14 chr4 110245322 110246227 -45383893 + L1Md_F2 LINE L1 5666 6577 -5 4 1426 297 248 75 56 chr4 110246550 110246657 -45383463 + Lx9 LINE L1 7061 7169 -475 4 1426 2218 58 10 3 chr4 110246875 110247170 -45382950 - L1_Mus2 LINE L1 0 6566 6270 4 1426 482 83 82 12 chr4 110247267 110247352 -45382768 + Lx LINE L1 6557 6647 -7 4 1426 791 327 51 15 chr4 110247768 110248100 -45382020 - Lx7 LINE L1 -13 7460 7117 4 1426 815 258 71 44 chr4 110248098 110248614 -45381506 - Lx7 LINE L1 -1530 6166 5601 4 1426 4141 281 62 28 chr4 110248632 110250181 -45379939 - Lx9 LINE L1 -1736 5908 4333 4 1426 456 35 0 0 chr4 110250181 110250239 -45379881 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 4 1426 4141 282 59 26 chr4 110250239 110250649 -45379471 - Lx9 LINE L1 -1548 4332 3878 4 1426 670 226 36 32 chr4 110250648 110250867 -45379253 - L1_Mur3 LINE L1 -1311 4569 4350 4 1426 304 304 75 19 chr4 110251066 110251227 -45378893 - L1MEg LINE L1 -4065 2019 1850 4 1426 202 348 45 0 chr4 110251797 110251886 -45378234 + MIR SINE MIR 68 160 -102 4 1426 360 368 56 0 chr4 110252134 110252278 -45377842 - RSINE1 SINE B4 -2 163 12 4 1426 330 311 100 37 chr4 110253749 110253939 -45376181 - RMER2 LTR ERV1 -4 563 362 4 1426 2634 113 15 2 chr4 110255466 110255866 -45374254 - Lx LINE L1 -8 6646 6242 4 1426 492 68 0 0 chr4 110256460 110256533 -45373587 + (T)n Simple_repeat Simple_repeat 1 73 0 4 1426 23 0 0 0 chr4 110258196 110258219 -45371901 + AT_rich Low_complexity Low_complexity 1 23 0 4 1426 732 218 75 0 chr4 110258896 110259084 -45371036 - Lx3C LINE L1 -2 6974 6773 4 1426 2829 203 20 36 chr4 110259083 110260055 -45370065 - L1VL4 LINE L1 -2155 1543 593 4 1426 3239 171 75 13 chr4 110260515 110261192 -45368928 - L1_Mur3 LINE L1 -115 5765 5047 4 1426 646 184 0 0 chr4 110261354 110261463 -45368657 + B1_Mus2 SINE Alu 23 131 -16 4 1426 339 296 0 34 chr4 110261358 110261477 -45368643 + ID_B1 SINE B4 108 222 -2 4 1426 198 0 0 0 chr4 110261998 110262020 -45368100 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1426 27 49 0 0 chr4 110262327 110262368 -45367752 + AT_rich Low_complexity Low_complexity 1 41 0 4 1426 492 18 0 0 chr4 110262839 110262896 -45367224 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1426 323 277 78 10 chr4 110263078 110263180 -45366940 - Tigger5 DNA MER2_type -2 2404 2296 4 1426 660 274 77 26 chr4 110263513 110263862 -45366258 - L1MD LINE L1 -2258 5737 5371 4 1426 227 293 70 10 chr4 110264051 110264151 -45365969 - L1M3e LINE L1 -1841 5265 5160 4 1426 248 222 44 11 chr4 110264321 110264412 -45365708 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1426 757 330 35 49 chr4 110264431 110264718 -45365402 - B4A SINE B4 0 292 10 4 1426 247 385 37 31 chr4 110264810 110264971 -45365149 - L1M3e LINE L1 -5503 1527 1366 4 1426 520 223 32 0 chr4 110265103 110265197 -45364923 + B1_Mur1 SINE Alu 22 118 -31 4 1426 528 325 128 46 chr4 110265248 110265704 -45364416 - L1M3e LINE L1 -6384 646 60 4 1426 206 348 9 26 chr4 110266087 110266202 -45363918 - MIRb SINE MIR -113 155 43 4 1426 24 0 0 0 chr4 110267079 110267103 -45363017 + AT_rich Low_complexity Low_complexity 1 24 0 4 1426 756 182 20 20 chr4 110267125 110267271 -45362849 - B1_Mur3 SINE Alu -1 148 3 4 1426 1541 85 0 0 chr4 110268132 110268463 -45361657 - L1_Mus2 LINE L1 0 6566 6354 4 1426 6479 97 1 1 chr4 110268463 110269406 -45360714 + L1_Mm LINE L1 3087 4029 -1854 4 1426 180 0 0 0 chr4 110270918 110270938 -45359182 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 1426 1276 222 86 9 chr4 110271092 110271429 -45358691 - Lx6 LINE L1 0 7460 7098 4 1426 376 295 93 0 chr4 110271652 110271781 -45358339 + B1_Mur1 SINE Alu 1 141 -8 4 1426 262 378 0 0 chr4 110271842 110271924 -45358196 + L1MDa LINE L1 657 738 -5895 4 1426 241 328 71 16 chr4 110271964 110272091 -45358029 + L1MDa LINE L1 959 1092 -5541 4 1426 784 319 66 8 chr4 110272163 110272406 -45357714 - B4A SINE B4 -35 257 1 4 1426 300 261 101 6 chr4 110272406 110272564 -45357556 + L1MDa LINE L1 1099 1271 -5362 4 1426 7311 117 18 4 chr4 110273652 110275241 -45354879 - Lx LINE L1 -58 6596 4971 4 1426 459 0 0 0 chr4 110276644 110276695 -45353425 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1426 231 176 27 150 chr4 110277037 110277184 -45352936 - Lx9 LINE L1 -16 7628 7500 4 1426 290 284 109 9 chr4 110277482 110277702 -45352418 - L1M4 LINE L1 -2930 3216 2975 4 1426 825 56 0 0 chr4 110277825 110277932 -45352188 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 4 1426 1595 228 111 0 chr4 110278085 110278445 -45351675 + MTD LTR MaLR 6 405 -14 4 1426 4640 206 42 31 chr4 110280152 110280765 -45349355 - Lx5 LINE L1 -3 7047 6436 4 1426 6375 54 30 19 chr4 110280765 110281611 -45348509 - RLTR13A LTR ERVK 0 855 1 4 1426 4640 206 42 31 chr4 110281611 110282008 -45348112 - Lx5 LINE L1 -615 6435 6026 4 1426 714 168 0 0 chr4 110281992 110282111 -45348009 + Lx5 LINE L1 5924 6042 -1008 4 1426 277 293 98 0 chr4 110282120 110282202 -45347918 - MIRb SINE MIR -130 138 49 4 1426 308 357 5 48 chr4 110282329 110282535 -45347585 - B3A SINE B2 0 198 2 4 1426 21 0 0 0 chr4 110282611 110282632 -45347488 + AT_rich Low_complexity Low_complexity 1 21 0 4 1426 1140 46 13 0 chr4 110283148 110283301 -45346819 - L1Md_F3 LINE L1 -14 6570 6416 4 1426 477 50 0 0 chr4 110283301 110283361 -45346759 + (CAA)n Simple_repeat Simple_repeat 1 60 0 4 1426 1867 189 71 8 chr4 110283448 110283842 -45346278 - MTD LTR MaLR 0 419 1 4 1426 349 344 31 62 chr4 110284402 110284563 -45345557 - RSINE1 SINE B4 -8 157 2 4 1426 37426 16 1 9 chr4 110284956 110290114 -45340006 + L1Md_A LINE L1 476 5586 -297 4 1426 8770 13 1 0 chr4 110290114 110291109 -45339011 + L1Md_A LINE L1 5587 6582 0 4 1426 229 320 70 64 chr4 110291643 110291800 -45338320 - MLT1J1 LTR MaLR -283 161 4 4 1426 248 324 17 85 chr4 110291845 110291963 -45338157 - PB1D10 SINE Alu -1 116 7 4 1426 272 307 102 34 chr4 110292095 110292213 -45337907 - L1M6 LINE L1 -5591 905 780 4 1426 581 104 374 9 chr4 110292321 110292428 -45337692 + B1_Mus1 SINE Alu 3 148 0 4 1426 446 330 70 70 chr4 110292440 110292782 -45337338 - L1M5 LINE L1 -1418 4728 4387 4 1426 236 291 142 0 chr4 110292803 110292930 -45337190 - L1MEc LINE L1 -1820 4499 4355 4 1426 228 273 118 43 chr4 110292942 110293103 -45337017 - Lx5 LINE L1 0 7050 6878 4 1426 675 159 0 0 chr4 110293108 110293215 -45336905 - RMER19B LTR ERVK -795 107 1 4 1426 21 0 0 0 chr4 110293293 110293314 -45336806 + AT_rich Low_complexity Low_complexity 1 21 0 4 1426 21 0 0 0 chr4 110293512 110293533 -45336587 + AT_rich Low_complexity Low_complexity 1 21 0 4 1426 270 258 91 20 chr4 110293538 110293637 -45336483 - L1MEc LINE L1 -4268 2132 2027 4 1426 740 281 22 38 chr4 110293722 110293907 -45336213 - B4 SINE B4 0 292 111 4 1426 314 340 88 18 chr4 110294066 110294340 -45335780 - L1MEc LINE L1 -4429 1910 1621 4 1426 26 30 0 0 chr4 110294524 110294557 -45335563 + AT_rich Low_complexity Low_complexity 1 33 0 4 1426 414 0 0 0 chr4 110294566 110294612 -45335508 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1426 345 258 161 81 chr4 110294614 110294850 -45335270 - L1MEc LINE L1 -5078 1337 1041 4 1426 272 27 0 26 chr4 110294912 110294950 -45335170 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1426 1059 88 0 0 chr4 110294950 110295087 -45335033 - B1_Mus1 SINE Alu -10 138 2 4 1426 267 328 22 7 chr4 110295138 110295273 -45334847 - L1MEc LINE L1 -5551 849 713 4 1426 307 320 108 49 chr4 110295418 110295713 -45334407 + ORR1E LTR MaLR 51 379 0 4 1426 36690 27 2 10 chr4 110295829 110301021 -45329099 + L1Md_A LINE L1 442 5586 -297 4 1426 8300 38 1 0 chr4 110301022 110302016 -45328104 + L1Md_A LINE L1 5588 6582 0 4 1426 323 295 9 54 chr4 110302455 110302566 -45327554 - PB1D10 SINE Alu 0 117 12 4 1426 1233 269 36 65 chr4 110303722 110304413 -45325707 - L1M3 LINE L1 -1320 4820 4150 4 1426 33 66 0 0 chr4 110304724 110304785 -45325335 + AT_rich Low_complexity Low_complexity 1 61 0 4 1426 7542 80 9 5 chr4 110305405 110306961 -45323159 - L1_Mus2 LINE L1 0 6566 5005 4 1426 196 307 40 13 chr4 110307914 110307990 -45322130 + L2c LINE L2 3310 3387 0 4 1426 249 277 56 78 chr4 110307983 110308073 -45322047 + MIR SINE MIR 13 100 -162 4 1426 558 301 28 55 chr4 110308594 110308847 -45321273 + MLT1A0 LTR MaLR 97 342 -23 4 1426 1745 254 47 10 chr4 110309097 110309741 -45320379 - Lx6 LINE L1 -26 7434 6455 4 1426 291 284 36 22 chr4 110309743 110309880 -45320240 - L1M5 LINE L1 -787 5359 5221 4 1426 367 365 108 13 chr4 110310071 110310376 -45319744 - L1MEg2 LINE L1 -6052 400 67 4 1426 1377 290 101 12 chr4 110312382 110312868 -45317252 - MLT2B3 LTR ERVL -22 532 4 4 1426 320 322 180 0 chr4 110312916 110313099 -45317021 + LTR16B LTR ERVL 248 463 0 4 1426 567 322 7 7 chr4 110314443 110314593 -45315527 + RSINE1 SINE B4 2 151 -14 4 1426 405 0 0 0 chr4 110314595 110314640 -45315480 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1426 6247 89 65 5 chr4 110314679 110315608 -45314512 - Lx3_Mus LINE L1 0 7009 6026 4 1426 367 157 55 18 chr4 110316996 110317106 -45313014 + Lx6 LINE L1 7336 7449 -11 4 1426 448 325 35 153 chr4 110317276 110317727 -45312393 + LTR86A2 LTR ERVL 104 501 -7 4 1426 202 231 39 0 chr4 110317960 110318012 -45312108 - MIRb SINE MIR -88 180 127 4 1426 3667 147 8 18 chr4 110318029 110318653 -45311467 - Lx2B LINE L1 -4 6996 6379 4 1426 530 337 56 73 chr4 110319267 110319542 -45310578 - L2 LINE L2 -963 2456 2193 4 1426 1197 123 0 5 chr4 110319542 110319730 -45310390 + L1_Mus2 LINE L1 6380 6566 0 4 1426 530 337 56 73 chr4 110319730 110319986 -45310134 - L2 LINE L2 -1227 2192 1934 4 1426 224 308 0 0 chr4 110319983 110320048 -45310072 + MIRb SINE MIR 172 236 -32 4 1426 469 184 9 9 chr4 110320902 110321012 -45309108 + GA-rich Low_complexity Low_complexity 4 113 0 4 1426 486 0 0 0 chr4 110321488 110321542 -45308578 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 1426 3129 173 30 19 chr4 110321546 110322140 -45307980 - Lx4B LINE L1 -36 7022 6422 5 1426 237 280 106 25 chr4 110322440 110322601 -45307519 + L1ME3A LINE L1 5815 5988 -185 5 1426 5332 3 0 0 chr4 110323140 110323730 -45306390 - L1Md_A LINE L1 0 6582 5993 5 1426 1007 186 59 9 chr4 110323753 110323975 -45306145 - Lx4A LINE L1 -3 7055 6823 5 1426 3556 73 4 4 chr4 110323976 110324459 -45305661 - RLTR1C LTR ERV1 -20 483 1 5 1426 4553 148 20 23 chr4 110324459 110325212 -45304908 - Lx4A LINE L1 -208 6850 6100 5 1426 776 113 40 13 chr4 110325256 110325408 -45304712 - Lx2B LINE L1 -2 6998 6843 5 1426 213 208 264 0 chr4 110325415 110325487 -45304633 - B4A SINE B4 -200 92 2 5 1426 396 244 49 0 chr4 110325760 110325842 -45304278 + B1_Mur1 SINE Alu 63 148 -1 5 1426 219 69 0 0 chr4 110326160 110326189 -45303931 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1426 226 276 27 109 chr4 110326962 110327072 -45303048 + L2c LINE L2 3269 3369 -18 5 1426 337 145 20 0 chr4 110327202 110327282 -45302838 - Lx3_Mus LINE L1 -886 6095 6007 5 1426 6312 72 51 0 chr4 110327282 110328140 -45301980 + Lx3_Mus LINE L1 6108 7009 0 5 1426 21 0 0 0 chr4 110328140 110328161 -45301959 + AT_rich Low_complexity Low_complexity 1 21 0 5 1426 276 331 58 39 chr4 110329194 110329348 -45300772 + MIRb SINE MIR 37 193 -75 5 1426 435 78 0 0 chr4 110329350 110329414 -45300706 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 5 1426 293 343 146 13 chr4 110330825 110331048 -45299072 + MIRc SINE MIR 2 253 -15 5 1426 308 385 66 14 chr4 110331786 110331997 -45298123 + MIRb SINE MIR 17 242 -26 5 1426 316 268 62 47 chr4 110332879 110333008 -45297112 - MER103 DNA DNA -35 131 1 5 1426 832 178 7 0 chr4 110334355 110334490 -45295630 - B1_Mus2 SINE Alu -2 145 10 5 1426 189 339 87 26 chr4 110334539 110334654 -45295466 - MIR SINE MIR -87 175 54 5 1426 45 45 0 0 chr4 110334736 110334802 -45295318 + AT_rich Low_complexity Low_complexity 1 66 0 5 1426 320 343 67 0 chr4 110335145 110335279 -45294841 + MER97c DNA MER1_type? 40 182 -908 5 1426 1998 155 86 8 chr4 110335619 110336003 -45294117 + Lx4B LINE L1 6632 7045 -13 5 1426 453 227 11 0 chr4 110336100 110336188 -45293932 - Lx8 LINE L1 -753 6720 6632 5 1426 222 37 0 0 chr4 110336454 110336481 -45293639 + (TCC)n Simple_repeat Simple_repeat 2 28 0 5 1426 477 0 0 0 chr4 110336481 110336534 -45293586 + (CTG)n Simple_repeat Simple_repeat 2 54 0 5 1426 468 93 0 0 chr4 110336744 110336819 -45293301 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1426 25 0 0 0 chr4 110336966 110336991 -45293129 + AT_rich Low_complexity Low_complexity 1 25 0 5 1426 280 309 10 0 chr4 110337090 110337187 -45292933 + A-rich Low_complexity Low_complexity 5 102 0 5 1426 2173 71 23 26 chr4 110337409 110337711 -45292409 - L1_Mus2 LINE L1 -206 6360 6060 5 1426 1414 87 0 80 chr4 110337711 110337937 -45292183 + L1_Mus2 LINE L1 6358 6565 -1 5 1426 290 322 41 8 chr4 110338558 110338680 -45291440 + MIRb SINE MIR 84 209 -59 5 1426 444 312 24 16 chr4 110338680 110338807 -45291313 + RSINE1 SINE B4 3 130 -35 5 1426 2975 40 70 0 chr4 110338825 110339199 -45290921 + L1Md_F2 LINE L1 6180 6579 -3 5 1426 1155 87 6 11 chr4 110339420 110339595 -45290525 + L1Md_F2 LINE L1 6396 6569 -13 5 1426 347 374 39 22 chr4 110339816 110339994 -45290126 - MER21B LTR ERV1 -658 205 25 5 1426 269 203 136 0 chr4 110340507 110340566 -45289554 + MIRm SINE MIR 72 138 -138 5 1426 21 0 0 0 chr4 110341187 110341208 -45288912 + AT_rich Low_complexity Low_complexity 1 21 0 5 1426 214 369 175 26 chr4 110341514 110341903 -45288217 + L2a LINE L2 2633 3079 -340 5 1426 210 314 82 45 chr4 110342055 110342165 -45287955 + L2a LINE L2 3309 3422 -4 5 1426 210 105 0 0 chr4 110342231 110342269 -45287851 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 5 1426 488 311 52 52 chr4 110342668 110342695 -45287425 + B4A SINE B4 2 28 -264 5 1426 423 132 0 0 chr4 110342695 110342763 -45287357 + (CAG)n Simple_repeat Simple_repeat 1 68 0 5 1426 488 311 52 52 chr4 110342763 110342908 -45287212 + B4A SINE B4 29 174 -118 5 1426 279 0 0 0 chr4 110342918 110342949 -45287171 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1426 1147 75 0 0 chr4 110342961 110343107 -45287013 - B1_Mm SINE Alu -1 146 1 5 1426 468 0 0 0 chr4 110344536 110344588 -45285532 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 5 1426 531 101 0 0 chr4 110344875 110344954 -45285166 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1426 386 358 36 0 chr4 110345209 110345240 -45284880 - B3 SINE B2 -5 211 181 5 1426 495 0 0 0 chr4 110345240 110345295 -45284825 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1426 386 358 36 0 chr4 110345295 110345400 -45284720 - B3 SINE B2 -36 180 71 5 1426 843 250 14 5 chr4 110345406 110345623 -45284497 + Lx9 LINE L1 6993 7211 -433 5 1426 293 128 0 21 chr4 110345633 110345681 -45284439 - Lx9 LINE L1 -605 7039 6993 5 1426 329 329 0 0 chr4 110345687 110345760 -45284360 + B3 SINE B2 70 142 -74 5 1426 294 133 0 0 chr4 110345837 110345882 -45284238 + B3 SINE B2 1 45 -171 5 1426 2975 182 33 14 chr4 110345900 110346530 -45283590 - Lx9 LINE L1 -10 7634 6993 5 1426 228 67 0 0 chr4 110346841 110346871 -45283249 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1426 232 352 14 0 chr4 110347959 110348030 -45282090 + MIR3 SINE MIR 92 163 -45 5 1426 193 236 135 27 chr4 110348104 110348178 -45281942 + MIRm SINE MIR 108 189 -87 5 1426 2157 144 77 20 chr4 110348213 110348617 -45281503 - Lx LINE L1 -2 6652 6226 5 1426 925 239 24 0 chr4 110348655 110348864 -45281256 + B3 SINE B2 3 216 0 5 1426 1528 173 27 72 chr4 110348927 110349209 -45280911 + RLTR15 LTR ERVK 3 284 -75 5 1426 930 102 17 17 chr4 110349209 110349388 -45280732 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1426 1528 173 27 72 chr4 110349388 110349479 -45280641 + RLTR15 LTR ERVK 285 359 0 5 1426 387 368 83 41 chr4 110350970 110351381 -45278739 - L2c LINE L2 -4 3383 2956 5 1426 4810 82 3 11 chr4 110352049 110352706 -45277414 + L1_Mus3 LINE L1 5981 6632 -6 5 1426 309 342 82 38 chr4 110353023 110353181 -45276939 - L1M5 LINE L1 -444 5680 5516 5 1426 449 278 0 10 chr4 110353247 110353345 -45276775 - PB1D10 SINE Alu -16 101 5 5 1426 1122 95 29 6 chr4 110353361 110353531 -45276589 - B2_Mm2 SINE B2 -19 176 3 5 1426 31 0 0 0 chr4 110353538 110353569 -45276551 + AT_rich Low_complexity Low_complexity 1 31 0 5 1426 200 217 0 0 chr4 110353623 110353669 -45276451 + T-rich Low_complexity Low_complexity 1 46 0 5 1426 3656 30 0 0 chr4 110353971 110354402 -45275718 - L1Md_T LINE L1 0 6582 6152 5 1426 846 257 42 159 chr4 110354473 110354637 -45275483 - Lx8 LINE L1 -194 7279 7162 5 1426 450 0 0 0 chr4 110354637 110354687 -45275433 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1426 846 257 42 159 chr4 110354687 110354980 -45275140 - Lx8 LINE L1 -312 7161 6876 5 1426 685 188 13 0 chr4 110355074 110355228 -45274892 + CT-rich Low_complexity Low_complexity 2 157 0 5 1426 905 291 76 16 chr4 110355243 110355494 -45274626 - Lx5 LINE L1 -17 7033 6768 5 1426 3683 110 14 13 chr4 110356215 110356767 -45273353 - Lx LINE L1 -1 6653 6101 5 1426 208 293 35 0 chr4 110356794 110356852 -45273268 + MIR SINE MIR 146 205 -57 5 1426 1644 49 0 10 chr4 110357277 110357485 -45272635 + L1_Mus1 LINE L1 6362 6567 0 5 1426 6946 58 1 17 chr4 110359004 110359908 -45270212 - L1_Mus1 LINE L1 0 6567 5678 5 1426 445 108 0 30 chr4 110359911 110359978 -45270142 - L1_Mus1 LINE L1 -334 5549 5485 5 1426 211 335 113 38 chr4 110360121 110360307 -45269813 + MIRb SINE MIR 69 268 0 5 1426 378 305 137 0 chr4 110360523 110360654 -45269466 - RSINE1 SINE B4 -14 151 3 5 1426 702 239 48 48 chr4 110360762 110360951 -45269169 - RMER15 LTR ERVL 0 575 387 5 178 38514 5 0 0 chr4 110360951 110366302 -45263818 + L1Md_A LINE L1 235 5586 -297 5 1427 9007 3 0 0 chr4 110366302 110367298 -45262822 + L1Md_A LINE L1 5587 6582 0 5 1427 1176 237 14 157 chr4 110367299 110367719 -45262401 - RMER15 LTR ERVL -166 409 50 5 1427 611 147 32 32 chr4 110367734 110367889 -45262231 + Lx9 LINE L1 7482 7636 -8 5 1427 3043 52 3 3 chr4 110367935 110368319 -45261801 + MTA_Mm LTR MaLR 1 384 -12 5 1427 1098 218 4 0 chr4 110368330 110368555 -45261565 + URR1A DNA MER1_type 1 226 0 5 1427 691 275 29 96 chr4 110369452 110369661 -45260459 + B3A SINE B2 12 206 -10 5 1427 1119 217 57 35 chr4 110369995 110370310 -45259810 - L1_Rod LINE L1 -92 5755 5434 5 1427 279 0 0 0 chr4 110370759 110370790 -45259330 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1427 921 309 71 11 chr4 110370869 110371223 -45258897 + MTE2b LTR MaLR 1 375 -4 5 1427 522 320 110 23 chr4 110372556 110373496 -45256624 + L1M2 LINE L1 1516 2537 -3606 5 1427 1421 284 90 22 chr4 110373507 110374457 -45255663 + L1M2 LINE L1 3461 4480 -1400 5 1427 345 279 12 0 chr4 110374467 110374553 -45255567 + MTE2a LTR MaLR 9 95 -284 5 1427 552 262 87 6 chr4 110374558 110374719 -45255401 + MTE2a LTR MaLR 59 232 -147 5 1427 381 328 50 11 chr4 110374719 110374898 -45255222 + Lx8 LINE L1 6871 7056 -417 5 1427 222 400 40 0 chr4 110374900 110375025 -45255095 - MIRc SINE MIR -31 237 108 5 1427 315 265 176 48 chr4 110375841 110376051 -45254069 + Lx8 LINE L1 7012 7248 -225 5 1427 186 71 0 0 chr4 110376104 110376132 -45253988 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1427 356 222 9 0 chr4 110376143 110376251 -45253869 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1427 1712 256 30 14 chr4 110376454 110376881 -45253239 - Lx6 LINE L1 -8 7452 7019 5 1427 5970 123 84 4 chr4 110377262 110378368 -45251752 + Lx LINE L1 5450 6641 -13 5 1427 1354 223 19 103 chr4 110378955 110379384 -45250736 + Lx9 LINE L1 7241 7633 -11 5 1427 418 280 127 0 chr4 110380549 110380699 -45249421 - MIRb SINE MIR -56 212 44 5 1427 400 294 4 17 chr4 110380794 110380914 -45249206 - MIRb SINE MIR -45 163 46 5 1427 629 274 73 4 chr4 110381375 110381611 -45248509 - Lx7 LINE L1 -87 5793 5543 5 1427 926 288 83 9 chr4 110381598 110381935 -45248185 + L1_Mur3 LINE L1 4881 5242 -638 5 1427 1838 237 66 101 chr4 110381943 110382937 -45247183 + RMER17B LTR ERVK 1 897 -11 6 1427 3548 128 2 0 chr4 110382986 110383549 -45246571 - L1_Mm LINE L1 -2005 3878 3315 6 1427 3234 94 13 0 chr4 110383548 110384014 -45246106 + L1_Mm LINE L1 3908 4379 -1504 6 1427 847 224 128 4 chr4 110384011 110384262 -45245858 + L1_Mur3 LINE L1 5261 5542 -338 5 1427 34527 44 2 3 chr4 110384375 110390839 -45239281 - L1Md_T LINE L1 0 6585 30 6 1427 28 29 0 0 chr4 110390905 110390940 -45239180 + AT_rich Low_complexity Low_complexity 1 35 0 6 1427 3825 35 2 0 chr4 110391581 110392034 -45238086 + L1Md_F2 LINE L1 6114 6567 -15 6 1427 2091 152 88 10 chr4 110392150 110392536 -45237584 - MTC LTR MaLR 0 421 6 6 1427 1730 150 25 6 chr4 110393770 110394086 -45236034 + Lx2B LINE L1 6679 7000 0 6 1427 6954 85 14 0 chr4 110394137 110395115 -45235005 - L1_Mur1 LINE L1 -1249 4637 3646 6 1427 1306 272 5 42 chr4 110395115 110395499 -45234621 + Lx9 LINE L1 6738 7107 -537 6 1427 4144 212 129 44 chr4 110395871 110397040 -45233080 - Lx9 LINE L1 -60 7584 6316 6 1427 1505 216 68 24 chr4 110397120 110397651 -45232469 - Lx9 LINE L1 -1546 6098 5518 6 1427 1779 215 78 48 chr4 110397649 110398239 -45231881 + L1_Rod LINE L1 4337 4944 -903 6 1427 1812 226 88 25 chr4 110398266 110398710 -45231410 - Lx5 LINE L1 -3 7047 6576 6 1427 258 193 0 0 chr4 110398819 110398876 -45231244 + T-rich Low_complexity Low_complexity 1 57 0 6 1427 1167 68 0 7 chr4 110398878 110399026 -45231094 - B1_Mus1 SINE Alu 0 148 2 6 1427 833 224 114 34 chr4 110399207 110399443 -45230677 + MER2 DNA MER2_type 90 344 -1 6 1427 182 281 17 50 chr4 110400410 110400470 -45229650 - L2a LINE L2 0 3426 3369 6 1427 180 214 0 23 chr4 110400694 110400737 -45229383 + MIRb SINE MIR 192 233 -35 6 1427 1006 164 289 15 chr4 110400760 110401003 -45229117 + RMER19C LTR ERVK 1 278 -333 6 1427 311 352 116 53 chr4 110401187 110401505 -45228615 - L1MDa LINE L1 -5415 1218 881 6 1427 399 365 80 75 chr4 110401797 110402185 -45227935 - L1MDa LINE L1 -6198 435 46 6 1427 297 75 0 0 chr4 110402214 110402254 -45227866 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 1427 400 325 79 39 chr4 110402326 110402481 -45227639 + B3A SINE B2 44 204 -12 6 1427 333 214 67 0 chr4 110402738 110402827 -45227293 - L1M5 LINE L1 -346 5778 5684 6 1427 373 19 0 36 chr4 110402849 110402905 -45227215 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 6 1427 6100 56 18 0 chr4 110402907 110403670 -45226450 - L1Md_F2 LINE L1 -19 6563 5787 6 1427 3295 63 0 0 chr4 110403670 110404097 -45226023 + L1_Mm LINE L1 3681 4107 -1776 6 1427 4258 169 73 1 chr4 110404134 110404902 -45225218 - Lx4B LINE L1 -271 6787 5965 6 1427 2221 132 11 11 chr4 110404897 110405249 -45224871 + Lx4A LINE L1 5640 5991 -1067 6 1427 7525 83 3 2 chr4 110406062 110407227 -45222893 + L1_Mus2 LINE L1 4819 5984 -582 6 1427 809 143 12 43 chr4 110409172 110409333 -45220787 + URR1A DNA MER1_type 68 223 -3 6 1427 2133 254 102 79 chr4 110409885 110410732 -45219388 + Lx7 LINE L1 6065 6930 -766 6 1427 601 288 9 48 chr4 110410732 110410962 -45219158 + Lx7 LINE L1 7130 7350 -346 6 1427 351 107 47 39 chr4 110410978 110411049 -45219071 + T-rich Low_complexity Low_complexity 56 130 0 6 1427 523 223 123 0 chr4 110411049 110411179 -45218941 - B1_Mus1 SINE Alu 0 148 3 6 1427 351 107 47 39 chr4 110411179 110411234 -45218886 + T-rich Low_complexity Low_complexity 3 55 0 6 1427 502 297 40 46 chr4 110411363 110411515 -45218605 + B3A SINE B2 41 191 -7 6 1427 567 85 0 0 chr4 110411721 110411803 -45218317 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1427 2135 60 0 34 chr4 110412036 110412329 -45217791 - L1Md_F2 LINE L1 0 6582 6300 6 1427 238 393 9 9 chr4 110413417 110413530 -45216590 - L2b LINE L2 -3 3372 3260 6 1427 28 0 0 0 chr4 110413843 110413871 -45216249 + AT_rich Low_complexity Low_complexity 1 28 0 6 1427 6896 63 8 9 chr4 110414310 110415202 -45214918 - L1_Mus1 LINE L1 -2 6565 5675 6 1427 5142 100 1 0 chr4 110415197 110415914 -45214206 + L1_Mus1 LINE L1 4974 5691 -192 6 1427 736 279 54 15 chr4 110416213 110416417 -45213703 - B3 SINE B2 0 216 5 6 1427 825 332 74 18 chr4 110416451 110416831 -45213289 - Lx8 LINE L1 -6 7467 7067 6 1427 318 305 86 38 chr4 110417327 110417567 -45212553 - ORR1C2 LTR MaLR -98 286 30 6 1427 378 0 0 0 chr4 110417953 110417995 -45212125 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1427 23 33 0 0 chr4 110418285 110418315 -45211805 + AT_rich Low_complexity Low_complexity 1 30 0 6 1427 5281 9 0 0 chr4 110418890 110419544 -45210576 - L1Md_T LINE L1 -638 5944 5291 6 1427 5434 44 0 0 chr4 110419544 110420204 -45209916 + L1Md_T LINE L1 5923 6582 0 6 1427 23 0 0 0 chr4 110421221 110421244 -45208876 + AT_rich Low_complexity Low_complexity 1 23 0 6 1427 258 299 64 110 chr4 110421834 110421943 -45208177 + PB1D10 SINE Alu 2 105 -12 6 1427 476 131 60 10 chr4 110421996 110422096 -45208024 + Lx2 LINE L1 6892 6996 -1 6 1427 5165 76 11 13 chr4 110422105 110422809 -45207311 + L1Md_F2 LINE L1 5879 6581 -1 6 1427 309 82 0 0 chr4 110422866 110422915 -45207205 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1427 489 79 0 62 chr4 110422915 110422931 -45207189 - B1_Mm SINE Alu 0 147 136 6 1427 3152 51 185 2 chr4 110422931 110423364 -45206756 + RLTR1B LTR ERV1 1 512 0 6 1427 489 79 0 62 chr4 110423364 110423428 -45206692 - B1_Mm SINE Alu -12 135 72 6 1427 22 35 0 0 chr4 110424248 110424277 -45205843 + AT_rich Low_complexity Low_complexity 1 29 0 6 1427 1400 119 0 22 chr4 110424508 110424732 -45205388 - Lx LINE L1 -8 6646 6428 6 1427 401 255 93 60 chr4 110424732 110424882 -45205238 + Lx5 LINE L1 6896 7050 0 6 1427 1294 170 4 13 chr4 110425036 110425263 -45204857 - URR1B DNA MER1_type 0 225 1 6 1427 227 353 57 25 chr4 110425315 110425381 -45204739 + B3 SINE B2 80 146 -70 6 1427 426 20 0 0 chr4 110425381 110425432 -45204688 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1427 227 353 57 25 chr4 110425432 110425487 -45204633 + B3 SINE B2 147 205 -11 6 1427 273 380 120 0 chr4 110425507 110425657 -45204463 + MLT1E3 LTR MaLR 457 624 0 6 1427 195 404 56 25 chr4 110426070 110426268 -45203852 + L2b LINE L2 2162 2365 -1054 6 1427 799 98 22 54 chr4 110427246 110427430 -45202690 + CT-rich Low_complexity Low_complexity 2 179 0 6 1427 614 126 0 10 chr4 110427437 110427541 -45202579 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 6 1427 26 30 0 0 chr4 110427557 110427590 -45202530 + AT_rich Low_complexity Low_complexity 1 33 0 6 1427 3574 129 27 0 chr4 110427591 110428141 -45201979 - Lx3C LINE L1 -2 6974 6410 6 1427 21 0 0 0 chr4 110428227 110428248 -45201872 + AT_rich Low_complexity Low_complexity 1 21 0 6 1427 25 31 0 0 chr4 110428288 110428320 -45201800 + AT_rich Low_complexity Low_complexity 1 32 0 6 1427 389 274 97 63 chr4 110428585 110428750 -45201370 + MLT1A1 LTR MaLR 11 181 -227 6 1427 1290 253 58 84 chr4 110428750 110429165 -45200955 + MTD LTR MaLR 1 404 -15 6 1427 712 74 19 0 chr4 110429303 110429411 -45200709 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1427 391 262 19 9 chr4 110429503 110429611 -45200509 + MLT1A1 LTR MaLR 300 408 0 6 1427 201 288 17 111 chr4 110430699 110430816 -45199304 + L2b LINE L2 3054 3159 -228 6 1427 398 295 53 30 chr4 110430933 110431066 -45199054 + MIRb SINE MIR 20 155 -113 6 1427 267 31 0 0 chr4 110431728 110431760 -45198360 + (TAA)n Simple_repeat Simple_repeat 3 34 0 6 1427 302 212 203 45 chr4 110431859 110432061 -45198059 + Lx9 LINE L1 7402 7635 -9 6 1427 279 0 0 0 chr4 110432407 110432438 -45197682 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1427 4099 142 96 12 chr4 110432477 110433219 -45196901 + Lx2B LINE L1 6183 6986 -14 6 1427 1289 281 98 15 chr4 110433232 110433835 -45196285 + L1MA6 LINE L1 5599 6251 -49 6 1427 231 36 0 0 chr4 110433848 110433876 -45196244 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1427 38599 54 3 4 chr4 110433895 110440193 -45189927 - L1Md_T LINE L1 -1 6581 331 6 1427 22 35 0 0 chr4 110440201 110440230 -45189890 + AT_rich Low_complexity Low_complexity 1 29 0 6 1427 4187 211 106 17 chr4 110440293 110441329 -45188791 - Lx4B LINE L1 -5 7053 5925 6 1427 590 221 127 116 chr4 110441960 110442339 -45187781 + L1ME3A LINE L1 5566 5948 -225 6 1427 326 237 20 10 chr4 110442580 110442602 -45187518 + L1_Mur2 LINE L1 3173 3196 -2681 6 1427 4032 31 12 6 chr4 110442602 110443093 -45187027 - L1Md_F3 LINE L1 0 6584 6091 6 1427 506 68 0 13 chr4 110443093 110443168 -45186952 + L1_Mm LINE L1 3204 3277 -2606 6 1427 2723 70 2 61 chr4 110443214 110443708 -45186412 - L1_Mus2 LINE L1 0 6566 6177 6 1427 29 28 0 0 chr4 110444405 110444441 -45185679 + AT_rich Low_complexity Low_complexity 1 36 0 6 1427 923 42 0 151 chr4 110444460 110444626 -45185494 + L1Md_F2 LINE L1 6400 6540 -42 6 1427 2388 38 3 0 chr4 110444669 110444961 -45185159 + L1Md_A LINE L1 6289 6581 -1 6 1427 349 330 198 6 chr4 110445425 110445602 -45184518 + MER58A DNA MER1_type 14 224 0 6 1427 353 319 133 43 chr4 110446113 110446323 -45183797 - Tigger5 DNA MER2_type -2164 242 14 6 1427 192 152 0 0 chr4 110446435 110446468 -45183652 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1427 782 202 0 6 chr4 110446487 110446666 -45183454 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 1427 531 300 94 44 chr4 110447243 110447494 -45182626 + MIRb SINE MIR 13 268 0 6 1427 313 236 65 97 chr4 110447711 110447866 -45182254 - L1MC5 LINE L1 -111 7850 7701 6 1427 421 330 71 105 chr4 110448187 110448579 -45181541 - MTEa LTR MaLR 0 379 1 6 1427 943 240 45 0 chr4 110448784 110448984 -45181136 + B3 SINE B2 8 216 0 6 1427 26 101 0 0 chr4 110449270 110449359 -45180761 + AT_rich Low_complexity Low_complexity 1 89 0 6 1427 228 135 0 0 chr4 110449459 110449496 -45180624 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1427 309 186 0 0 chr4 110449621 110449691 -45180429 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1427 2689 111 2 21 chr4 110449729 110450154 -45179966 - L1_Mus3 LINE L1 -7 6631 6215 6 1427 10493 116 54 3 chr4 110450154 110452062 -45178058 + L1_Mus3 LINE L1 4214 6221 -417 6 1427 250 120 6 0 chr4 110452069 110452125 -45177995 - L1M2 LINE L1 -396 5904 5848 6 1427 600 259 53 0 chr4 110452125 110452256 -45177864 - B1_Mur1 SINE Alu -10 139 2 6 1427 395 297 93 34 chr4 110452257 110452494 -45177626 - L1M2 LINE L1 -506 5785 5535 6 1427 2487 103 62 23 chr4 110452643 110453031 -45177089 - RLTR9D LTR ERVK 0 403 1 7 1427 577 294 63 37 chr4 110453632 110454010 -45176110 - Arthur1 DNA Tip100 -175 3772 3385 7 1427 258 320 0 26 chr4 110454009 110454086 -45176034 - Arthur1 DNA Tip100 -3848 99 25 7 1427 401 171 0 0 chr4 110454532 110454608 -45175512 - Lx2B LINE L1 -3272 2614 2539 7 1427 6177 157 149 32 chr4 110454601 110456005 -45174115 + Lx2B LINE L1 2628 4195 -1682 7 1427 8446 141 44 2 chr4 110456011 110457571 -45172549 + Lx2B LINE L1 5375 6994 -6 7 1427 187 344 116 8 chr4 110458489 110458618 -45171502 - L2a LINE L2 -4 3422 3280 7 1427 389 73 0 4 chr4 110458937 110458992 -45171128 + Lx LINE L1 5784 5836 -746 7 1427 23 33 0 0 chr4 110458992 110459022 -45171098 + AT_rich Low_complexity Low_complexity 1 30 0 7 1427 813 83 0 29 chr4 110459027 110459163 -45170957 - L1_Mus3 LINE L1 -12 6626 6495 7 1427 4676 155 26 5 chr4 110459158 110459951 -45170169 + Lx LINE L1 5836 6645 -9 7 1427 27 29 0 0 chr4 110460411 110460445 -45169675 + AT_rich Low_complexity Low_complexity 1 34 0 7 1427 1428 225 77 9 chr4 110462048 110462397 -45167723 + ORR1D1 LTR MaLR 2 374 0 7 1427 1610 106 0 0 chr4 110462824 110463042 -45167078 - L1_Mus4 LINE L1 -448 6188 5971 7 1427 3187 77 14 9 chr4 110463042 110463486 -45166634 + L1_Mus4 LINE L1 6175 6620 -16 7 1427 378 42 0 0 chr4 110465082 110465130 -45164990 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1427 24 77 0 0 chr4 110465185 110465237 -45164883 + AT_rich Low_complexity Low_complexity 1 52 0 7 1427 194 362 0 0 chr4 110465965 110466023 -45164097 - MIRc SINE MIR -146 122 65 7 1427 255 319 18 12 chr4 110466251 110466419 -45163701 + (TA)n Simple_repeat Simple_repeat 1 169 0 7 1427 21 0 0 0 chr4 110466566 110466587 -45163533 + AT_rich Low_complexity Low_complexity 1 21 0 7 1427 223 401 26 45 chr4 110467370 110467524 -45162596 + MIR3 SINE MIR 9 159 -49 7 1427 640 266 12 25 chr4 110467687 110467849 -45162271 - RLTR20A1 LTR ERVK 0 551 392 7 1427 620 202 148 25 chr4 110467881 110468043 -45162077 - RLTR20A1 LTR ERVK -352 182 1 7 1427 24 32 0 0 chr4 110468290 110468321 -45161799 + AT_rich Low_complexity Low_complexity 1 31 0 7 1427 479 250 9 26 chr4 110468693 110468808 -45161312 - PB1D9 SINE Alu -7 113 1 7 1427 307 352 57 76 chr4 110468843 110469000 -45161120 - MIRb SINE MIR -111 157 4 7 1427 311 268 36 12 chr4 110470170 110470253 -45159867 + MLT1A LTR MaLR 79 163 -202 7 1427 300 268 0 0 chr4 110470344 110470426 -45159694 + RMER1B Other Other 59 140 -926 7 1427 2759 207 218 19 chr4 110470612 110471365 -45158755 + RMER1B Other Other 143 1045 -21 7 1427 487 261 62 25 chr4 110471389 110471550 -45158570 + MLT1A LTR MaLR 206 372 -2 7 1427 222 307 0 26 chr4 110471801 110471878 -45158242 + (TATG)n Simple_repeat Simple_repeat 4 78 0 7 1427 489 17 0 0 chr4 110471881 110471939 -45158181 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1427 848 302 47 16 chr4 110471943 110472199 -45157921 - B4A SINE B4 -12 280 17 7 1427 342 313 10 10 chr4 110473206 110473306 -45156814 - PB1D7 SINE Alu -9 111 12 7 1427 2259 157 14 0 chr4 110473802 110474166 -45155954 - ORR1B1 LTR MaLR -23 371 3 7 1427 2353 157 13 57 chr4 110474203 110474758 -45155362 - RMER17A LTR ERVK -16 873 256 7 1427 1062 64 11 28 chr4 110474758 110474935 -45155185 + (GGGGA)n Simple_repeat Simple_repeat 4 177 0 7 1427 881 256 69 57 chr4 110474935 110474975 -45155145 - RMER17A LTR ERVK -575 314 275 7 1427 2263 117 39 28 chr4 110474950 110475413 -45154707 - RMER17A LTR ERVK -418 488 1 7 1427 521 326 59 38 chr4 110476425 110476774 -45153346 - MLT2D LTR ERVL -8 389 33 7 1427 6230 91 90 5 chr4 110476796 110477732 -45152388 - Lx3_Mus LINE L1 0 7009 5995 7 1427 2380 94 78 0 chr4 110477763 110477888 -45152232 + Lx3_Mus LINE L1 5910 6034 -975 7 1427 699 12 0 0 chr4 110477888 110477968 -45152152 + (GGGA)n Simple_repeat Simple_repeat 1 80 0 7 1427 2380 94 78 0 chr4 110477968 110478214 -45151906 + Lx3_Mus LINE L1 6035 6309 -700 7 1427 5935 191 74 17 chr4 110478415 110479654 -45150466 - Lx5 LINE L1 -2 7048 5739 7 1427 29 28 0 0 chr4 110479676 110479712 -45150408 + AT_rich Low_complexity Low_complexity 1 36 0 7 1427 2188 301 95 85 chr4 110479724 110480903 -45149217 - Lx5 LINE L1 -19 7031 5841 7 1427 655 261 91 10 chr4 110480908 110481117 -45149003 - L1_Mur3 LINE L1 -692 5188 4963 7 1427 2297 48 48 0 chr4 110481106 110481399 -45148721 - L1_Mus1 LINE L1 -241 6325 6019 7 1427 2092 77 0 0 chr4 110481399 110481672 -45148448 + L1_Mus1 LINE L1 6295 6567 0 7 1427 3046 173 20 4 chr4 110481688 110482024 -45148096 - L1_Mur3 LINE L1 -910 4970 4625 7 1427 243 0 0 0 chr4 110482024 110482051 -45148069 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1427 3046 173 20 4 chr4 110482051 110482271 -45147849 - L1_Mur3 LINE L1 -1256 4624 4405 7 1427 570 271 99 32 chr4 110483466 110483687 -45146433 + MTD LTR MaLR 170 405 -14 7 1427 231 284 39 69 chr4 110483972 110484074 -45146046 + MIRb SINE MIR 111 209 -59 7 1427 514 326 0 0 chr4 110484570 110484705 -45145415 - Tigger5 DNA MER2_type -2251 155 21 7 1427 185 0 0 39 chr4 110484750 110484776 -45145344 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1427 33 0 0 0 chr4 110484801 110484834 -45145286 + AT_rich Low_complexity Low_complexity 1 33 0 7 1427 581 349 47 44 chr4 110484964 110485339 -45144781 - MLT1B LTR MaLR 0 390 9 7 1427 802 29 19 0 chr4 110485757 110485862 -45144258 + (GA)n Simple_repeat Simple_repeat 1 107 0 7 1427 331 317 0 9 chr4 110485868 110485973 -45144147 - MLT2B2 LTR ERVL -49 513 410 7 1427 21 82 0 0 chr4 110486054 110486103 -45144017 + AT_rich Low_complexity Low_complexity 1 49 0 7 1427 263 233 27 0 chr4 110486186 110486259 -45143861 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 7 1427 662 274 41 23 chr4 110486259 110486431 -45143689 - MLT2B2 LTR ERVL -340 175 1 7 1427 1906 152 12 0 chr4 110486640 110486962 -45143158 + L1_Mm LINE L1 4849 5174 -709 7 1427 5200 116 3 11 chr4 110486962 110487745 -45142375 + L1_Mus3 LINE L1 5863 6638 0 7 1427 737 133 0 7 chr4 110487809 110487945 -45142175 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 7 1427 286 230 11 11 chr4 110488004 110488092 -45142028 + CT-rich Low_complexity Low_complexity 1 88 0 7 1427 1042 238 43 75 chr4 110488122 110488495 -45141625 + RLTR18 LTR ERVK 1 361 -255 7 1427 1012 285 48 16 chr4 110488499 110488809 -45141311 + RLTR18B LTR ERVK 193 512 0 7 1427 243 289 67 108 chr4 110488900 110489094 -45141026 - Lx8 LINE L1 -9 7464 7279 7 1427 737 275 39 15 chr4 110489095 110489298 -45140822 + Lx8 LINE L1 7039 7246 -227 7 1427 2704 219 54 19 chr4 110489337 110489927 -45140193 + Lx6 LINE L1 6811 7421 -39 7 1427 1531 41 5 0 chr4 110490192 110490430 -45139690 - L1Md_F2 LINE L1 0 6582 6382 7 1427 341 113 0 46 chr4 110490430 110490452 -45139668 + T-rich Low_complexity Low_complexity 1 22 0 7 1427 252 0 0 0 chr4 110490904 110490932 -45139188 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1427 285 311 187 30 chr4 110491320 110491555 -45138565 - Lx8 LINE L1 -29 7444 7173 7 1427 1046 174 22 0 chr4 110491596 110491780 -45138340 + ORR1B1 LTR MaLR 195 382 -12 7 1427 928 274 59 97 chr4 110492222 110492646 -45137474 - MTE2a LTR MaLR -14 405 1 7 1427 391 344 109 0 chr4 110493335 110493463 -45136657 + RSINE1 SINE B4 3 144 -21 7 1428 366 100 0 0 chr4 110494420 110494480 -45135640 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 7 1428 541 269 21 21 chr4 110494591 110494727 -45135393 + MTE-int LTR MaLR 69 204 -1376 7 1428 761 208 0 0 chr4 110494727 110494857 -45135263 + B3 SINE B2 1 130 -86 7 1428 901 304 50 28 chr4 110494865 110495195 -45134925 + MTE-int LTR MaLR 125 517 -1218 7 1428 249 266 0 0 chr4 110495306 110495385 -45134735 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1428 1372 270 76 14 chr4 110495678 110496242 -45133878 + L1MA6 LINE L1 5587 6185 -115 7 1428 24 0 0 0 chr4 110496323 110496347 -45133773 + AT_rich Low_complexity Low_complexity 1 24 0 7 1428 6883 30 1 1 chr4 110496706 110497526 -45132594 + L1Md_F3 LINE L1 5765 6584 0 7 1428 316 342 63 0 chr4 110497563 110497674 -45132446 + L2b LINE L2 3258 3375 0 7 1428 1348 292 28 11 chr4 110497852 110498212 -45131908 - MTE2b LTR MaLR -12 367 2 7 1428 443 323 114 10 chr4 110498783 110499080 -45131040 + MER46C DNA MER2_type 10 337 -1 7 1428 788 188 28 0 chr4 110499141 110499285 -45130835 - B1_Mur2 SINE Alu -1 148 1 7 1428 1047 57 7 0 chr4 110500081 110500221 -45129899 + B1_Mus1 SINE Alu 8 148 0 1 1428 216 0 0 0 chr4 110500221 110500245 -45129875 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1428 437 274 0 8 chr4 110500928 110501046 -45129074 + LTR40a LTR ERVL 403 519 0 3 1428 815 354 18 33 chr4 110501495 110501948 -45128172 - Lx8 LINE L1 -672 6801 6356 4 1428 560 346 24 39 chr4 110501974 110502305 -45127815 + Lx9 LINE L1 6998 7323 -321 5 1428 196 367 61 10 chr4 110502886 110502985 -45127135 - MIRm SINE MIR -5 271 168 6 1428 825 233 48 19 chr4 110503021 110503172 -45126948 + B3 SINE B2 1 153 -63 7 1428 423 56 0 0 chr4 110503172 110503226 -45126894 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1428 825 233 48 19 chr4 110503226 110503284 -45126836 + B3 SINE B2 154 215 -1 7 1428 981 82 88 7 chr4 110503319 110503455 -45126665 - B1_Mus1 SINE Alu -1 147 1 9 1428 2365 94 29 39 chr4 110503605 110503991 -45126129 + Lx LINE L1 6271 6652 -2 1 1428 636 14 0 0 chr4 110504025 110504098 -45126022 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 1428 957 175 87 21 chr4 110504103 110504344 -45125776 + RMER6D LTR ERVK 334 586 -170 1 1428 1280 151 40 4 chr4 110504334 110504561 -45125559 + RMER16 LTR ERVK 198 432 -101 1 1428 393 347 93 15 chr4 110504603 110504808 -45125312 - LTR33 LTR ERVL -6 509 289 1 1428 4971 151 29 92 chr4 110505342 110506304 -45123816 - RMER19B LTR ERVK 0 902 1 1 1428 22 0 0 0 chr4 110507346 110507368 -45122752 + AT_rich Low_complexity Low_complexity 1 22 0 1 1428 2085 289 36 33 chr4 110507659 110508575 -45121545 + L1_Mur3 LINE L1 4351 5269 -611 1 1428 252 271 35 0 chr4 110508659 110508744 -45121376 + MLT2C1 LTR ERVL 45 132 -265 1 1428 386 339 80 61 chr4 110509166 110509477 -45120643 + MLT1A LTR MaLR 5 321 -53 1 1428 1592 195 53 17 chr4 110509477 110509883 -45120237 + Lx9 LINE L1 5481 5930 -1714 2 1428 318 361 114 38 chr4 110510052 110510314 -45119806 - L1MEc LINE L1 -6057 343 62 2 1428 441 0 0 0 chr4 110510572 110510621 -45119499 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1428 2267 214 34 8 chr4 110510634 110511830 -45118290 - Lx3C LINE L1 -23 6953 5702 2 1428 239 266 23 102 chr4 110511877 110511965 -45118155 - Kanga1 DNA Tc2 -1505 240 160 2 1428 620 251 53 46 chr4 110512214 110512498 -45117622 + L1MB7 LINE L1 5524 5809 -365 2 1428 294 29 0 0 chr4 110512545 110512580 -45117540 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1428 1035 88 0 51 chr4 110512580 110512736 -45117384 + B1_Mus1 SINE Alu 1 148 0 2 1428 207 69 0 0 chr4 110512741 110512770 -45117350 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1428 353 287 39 10 chr4 110512772 110512874 -45117246 + B4 SINE B4 8 112 -180 2 1428 355 242 102 24 chr4 110512983 110513110 -45117010 + L1MB7 LINE L1 5866 6002 -182 2 1428 650 13 13 0 chr4 110514094 110514173 -45115947 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1428 273 316 28 49 chr4 110514355 110514498 -45115622 - RMER15 LTR ERVL -91 484 345 3 1428 236 264 53 84 chr4 110515778 110515873 -45114247 - MTEa LTR MaLR 0 379 288 3 1428 203 122 49 0 chr4 110516125 110516166 -45113954 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1428 21 36 0 0 chr4 110516581 110516609 -45113511 + AT_rich Low_complexity Low_complexity 1 28 0 3 1428 1811 245 44 5 chr4 110516954 110517344 -45112776 - MTD LTR MaLR -14 405 1 3 1428 1476 240 43 6 chr4 110517367 110517690 -45112430 - MTD LTR MaLR -57 362 28 3 1428 1247 126 5 40 chr4 110517694 110517918 -45112202 + RMER6A LTR ERVK 349 564 -192 3 1428 505 272 196 9 chr4 110518005 110518119 -45112001 - L1_Rod LINE L1 0 5847 5708 3 1428 423 0 0 0 chr4 110518119 110518166 -45111954 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1428 505 272 196 9 chr4 110518166 110518388 -45111732 - L1_Rod LINE L1 -140 5707 5448 3 1428 6444 146 51 6 chr4 110518390 110519490 -45110630 - Lx4A LINE L1 -10 7048 5899 4 1428 915 159 6 23 chr4 110519491 110519665 -45110455 + L1_Mur2 LINE L1 5542 5712 -165 4 1428 1736 191 71 35 chr4 110519665 110520089 -45110031 + RMER17B LTR ERVK 1 439 -519 4 1428 3036 60 0 17 chr4 110520089 110520494 -45109626 - L1Md_F2 LINE L1 -12 6570 6173 4 1428 7340 54 0 1 chr4 110520494 110521405 -45108715 + L1Md_T LINE L1 5673 6582 0 4 1428 856 73 0 0 chr4 110521407 110521517 -45108603 - L1Md_F2 LINE L1 -394 6188 6079 4 1428 1188 284 36 120 chr4 110521517 110522122 -45107998 + RMER17B LTR ERVK 370 866 -42 4 1428 860 147 6 0 chr4 110522126 110522283 -45107837 - L1_Mur2 LINE L1 -1869 4008 3851 4 1428 765 216 263 55 chr4 110522418 110522792 -45107328 + Lx6 LINE L1 6998 7449 -11 4 1428 3213 48 5 0 chr4 110522797 110523191 -45106929 + MTA_Mm LTR MaLR 1 396 0 4 1428 289 220 68 0 chr4 110523579 110523638 -45106482 + ID4 SINE ID 21 83 0 4 1428 182 348 0 136 chr4 110523717 110523820 -45106300 + L2c LINE L2 3287 3375 -12 4 1428 3078 44 13 8 chr4 110524995 110525385 -45104735 - L1Md_F3 LINE L1 0 6584 6193 5 1428 2034 35 0 0 chr4 110525385 110525639 -45104481 + L1Md_F3 LINE L1 5920 6173 -411 5 1428 218 56 28 0 chr4 110526089 110526125 -45103995 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 5 1428 189 107 0 0 chr4 110526196 110526224 -45103896 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1428 2338 131 0 0 chr4 110526813 110527171 -45102949 + Lx2 LINE L1 6271 6628 -369 5 1428 450 241 54 108 chr4 110527171 110527357 -45102763 + B4 SINE B4 48 223 -69 5 1428 949 65 7 92 chr4 110527206 110527359 -45102761 + B1_Mus1 SINE Alu 9 148 0 5 1428 2083 111 9 9 chr4 110527371 110527708 -45102412 + Lx LINE L1 6317 6653 -1 5 1428 35 0 0 0 chr4 110528024 110528059 -45102061 + AT_rich Low_complexity Low_complexity 1 35 0 5 1428 25 31 0 0 chr4 110528148 110528180 -45101940 + AT_rich Low_complexity Low_complexity 1 32 0 5 1428 3301 135 4 4 chr4 110528180 110528693 -45101427 - Lx3A LINE L1 -3 6978 6466 5 1428 234 371 51 10 chr4 110530355 110530453 -45099667 - L2b LINE L2 0 3375 3274 6 1428 937 283 125 14 chr4 110530453 110530804 -45099316 - MLT1B LTR MaLR 0 390 1 6 1428 621 329 74 69 chr4 110531717 110532151 -45097969 - MLT1D LTR MaLR -7 498 63 6 1428 10607 81 32 8 chr4 110532400 110534268 -45095852 - Lx3_Mus LINE L1 0 7009 5100 6 1428 1240 192 0 11 chr4 110534268 110534532 -45095588 - L1Md_F2 LINE L1 -12 6570 6310 6 1428 10607 87 23 6 chr4 110534532 110535352 -45094768 - Lx3_Mus LINE L1 -787 5099 4258 6 1428 1433 83 39 4 chr4 110535349 110535580 -45094540 - Lx3_Mus LINE L1 -2098 3788 3550 6 1428 1881 110 317 0 chr4 110535575 110535985 -45094135 - Lx3_Mus LINE L1 -2715 3171 2632 6 1428 1059 163 24 92 chr4 110535985 110536181 -45093939 - LTRIS5 LTR ERV1 0 447 250 6 1428 2898 38 0 0 chr4 110536181 110536525 -45093595 + L1Md_T LINE L1 6230 6573 -9 6 1428 1059 111 224 26 chr4 110536525 110536649 -45093471 - LTRIS5 LTR ERV1 -198 249 215 6 1428 298 84 12 0 chr4 110536649 110536702 -45093418 - MuRRS4-int LTR ERV1 0 7778 7737 6 1428 705 282 69 22 chr4 110536726 110537194 -45092926 - MuRRS4-int LTR ERV1 -801 4262 3728 6 1428 3714 106 15 20 chr4 110537196 110537782 -45092338 - ORR1A3-int LTR MaLR -439 1524 942 6 1428 1183 76 0 0 chr4 110537783 110537940 -45092180 - MuRRS4-int LTR ERV1 -2179 2884 2728 6 1428 880 50 92 0 chr4 110537938 110538057 -45092063 - MuRRS4-int LTR ERV1 -2589 2474 2345 6 1428 2135 112 58 61 chr4 110538047 110538538 -45091582 - MuRRS4-int LTR ERV1 -2774 2289 1918 6 1428 687 272 98 4 chr4 110538531 110538775 -45091345 - MuRRS4-int LTR ERV1 -3619 1444 1178 6 1428 378 186 0 104 chr4 110538798 110538894 -45091226 - RMER16-int LTR ERVK -3967 1439 1354 6 1428 16845 94 9 30 chr4 110538896 110542399 -45087721 + L1VL1 LINE L1 410 3822 -2061 6 1428 5829 74 9 1 chr4 110542388 110543204 -45086916 + L1VL1 LINE L1 4987 5808 -75 6 1428 826 72 24 8 chr4 110543204 110543330 -45086790 - RMER16-int LTR ERVK -4239 1167 1040 6 1428 650 152 0 9 chr4 110543310 110543423 -45086697 - RMER16-int LTR ERVK -4509 897 786 6 1428 867 125 106 6 chr4 110543424 110543585 -45086535 - RMER16-int LTR ERVK -5089 317 141 6 1428 983 81 59 0 chr4 110544117 110544253 -45085867 + B1_Mm SINE Alu 4 147 0 7 1428 189 0 0 0 chr4 110544253 110544274 -45085846 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1428 765 82 36 0 chr4 110544411 110544521 -45085599 - LTRIS3 LTR ERV1 0 512 399 7 1428 516 159 175 43 chr4 110544497 110544696 -45085424 - LTRIS5 LTR ERV1 -174 273 1 7 1428 9464 111 44 5 chr4 110544696 110546728 -45083392 - L1_Mur1 LINE L1 -3251 2635 215 7 1428 290 347 8 16 chr4 110546940 110547063 -45083057 - MIRb SINE MIR -36 232 111 7 1428 189 0 0 0 chr4 110547094 110547115 -45083005 + (TA)n Simple_repeat Simple_repeat 2 22 0 7 1428 2121 187 62 26 chr4 110547118 110547536 -45082584 - MT2A LTR ERVL -74 459 27 7 1428 314 0 49 0 chr4 110547546 110547587 -45082533 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 1428 7673 55 3 1 chr4 110547590 110548601 -45081519 - L1Md_F2 LINE L1 -19 6563 5574 7 1428 261 388 20 7 chr4 110548750 110548898 -45081222 + L2a LINE L2 3277 3426 0 8 1428 348 108 75 19 chr4 110549030 110549166 -45080954 + (TA)n Simple_repeat Simple_repeat 1 145 0 8 1428 3227 52 3 0 chr4 110549166 110549550 -45080570 - IAPEY_LTR LTR ERVK 0 385 1 8 1428 348 108 75 19 chr4 110549550 110549573 -45080547 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 1428 876 218 6 0 chr4 110549583 110549757 -45080363 - URR1A DNA MER1_type -51 175 1 8 1428 320 347 158 31 chr4 110549895 110550291 -45079829 - MLT1J1 LTR MaLR -11 437 1 8 1428 737 182 48 0 chr4 110551914 110552040 -45078080 + B1_Mur3 SINE Alu 1 132 -17 8 1428 23 33 0 0 chr4 110552938 110552968 -45077152 + AT_rich Low_complexity Low_complexity 1 30 0 8 1428 200 235 0 19 chr4 110553046 110553098 -45077022 - MIRc SINE MIR -25 243 193 8 1428 200 303 28 92 chr4 110553438 110553547 -45076573 - L2a LINE L2 -23 3403 3302 8 1428 897 294 143 39 chr4 110553771 110554232 -45075888 + MLT2B4 LTR ERVL 169 649 -68 9 1428 30 27 0 0 chr4 110554525 110554562 -45075558 + AT_rich Low_complexity Low_complexity 1 37 0 9 1428 27 0 0 0 chr4 110555860 110555887 -45074233 + AT_rich Low_complexity Low_complexity 1 27 0 9 1428 22 0 0 0 chr4 110556003 110556025 -45074095 + AT_rich Low_complexity Low_complexity 1 22 0 9 1428 2544 268 52 16 chr4 110556256 110557181 -45072939 + Lx5 LINE L1 6196 7414 -46 9 1428 275 338 23 48 chr4 110557590 110557786 -45072334 - MER5A1 DNA MER1_type -2 187 1 9 1428 246 298 97 28 chr4 110558663 110558808 -45071312 + MIRc SINE MIR 110 264 -4 9 1428 288 0 0 0 chr4 110559914 110559946 -45070174 + (CAGTG)n Simple_repeat Simple_repeat 3 34 0 9 1428 201 351 130 35 chr4 110559950 110560065 -45070055 - MIRm SINE MIR -132 144 19 9 1428 968 316 58 30 chr4 110560512 110560907 -45069213 + MLT1A1 LTR MaLR 1 406 -2 9 1428 201 261 0 0 chr4 110560948 110561002 -45069118 - MIRc SINE MIR -95 167 114 1 1428 757 302 30 5 chr4 110561025 110561228 -45068892 + MLT1D LTR MaLR 1 208 -297 1 1428 380 259 17 51 chr4 110562568 110562686 -45067434 - MLT1C LTR MaLR -23 444 331 1 1428 35 24 0 0 chr4 110562841 110562883 -45067237 + AT_rich Low_complexity Low_complexity 1 42 0 1 1428 314 346 112 41 chr4 110563382 110563650 -45066470 - L1MC LINE L1 -2090 5792 5506 1 1428 24 0 0 0 chr4 110563661 110563685 -45066435 + AT_rich Low_complexity Low_complexity 1 24 0 1 1428 247 334 56 4 chr4 110564028 110564155 -45065965 + MIR SINE MIR 88 224 -44 1 1428 435 106 0 0 chr4 110564210 110564276 -45065844 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1428 782 330 23 5 chr4 110564301 110564520 -45065600 - B4A SINE B4 -67 225 3 1 1428 328 333 8 37 chr4 110564622 110564801 -45065319 + CT-rich Low_complexity Low_complexity 1 173 0 1 1428 808 202 12 6 chr4 110565400 110565569 -45064551 - L1M4 LINE L1 -708 5476 5307 1 1428 723 298 16 31 chr4 110565579 110565594 -45064526 - B3A SINE B2 -2 196 183 1 1428 1234 215 85 30 chr4 110565594 110565958 -45064162 + ORR1C2 LTR MaLR 1 384 0 1 1428 723 298 16 31 chr4 110565958 110566136 -45063984 - B3A SINE B2 -16 182 6 1 1428 226 236 0 40 chr4 110566151 110566226 -45063894 - Lx8 LINE L1 0 7473 7402 1 1428 1575 294 93 70 chr4 110566348 110566705 -45063415 + L1_Mur3 LINE L1 4582 4949 -931 1 1428 254 29 29 0 chr4 110566705 110566740 -45063380 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1428 1575 294 93 70 chr4 110566740 110567460 -45062660 + L1_Mur3 LINE L1 4950 5683 -197 1 1428 860 298 78 87 chr4 110567569 110567926 -45062194 + ORR1D2 LTR MaLR 17 370 0 1 1428 22 0 0 0 chr4 110568557 110568579 -45061541 + AT_rich Low_complexity Low_complexity 1 22 0 1 1428 1206 155 53 4 chr4 110568633 110568860 -45061260 - L1_Mm LINE L1 -949 4934 4697 1 1428 2446 155 5 9 chr4 110568830 110569265 -45060855 + L1_Mur2 LINE L1 4931 5363 -514 1 1428 2784 117 286 0 chr4 110569265 110569769 -45060351 + Lx2 LINE L1 6334 6981 -16 1 1428 2093 118 41 14 chr4 110569767 110570111 -45060009 + L1_Mur2 LINE L1 3487 3839 -2038 1 1428 4938 189 43 7 chr4 110570113 110571138 -45058982 - Lx2B LINE L1 -1 6999 5938 1 1428 4682 138 61 37 chr4 110571147 110572077 -45058043 + RMER17B LTR ERVK 2 954 -4 1 1428 8286 29 9 2 chr4 110572245 110573295 -45056825 - L1Md_F3 LINE L1 0 6584 5587 1 1428 2295 210 48 25 chr4 110573299 110574000 -45056120 - Lx9 LINE L1 -1610 6034 5283 1 1428 228 67 0 0 chr4 110574078 110574108 -45056012 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1428 423 113 0 0 chr4 110574152 110574223 -45055897 + (TATG)n Simple_repeat Simple_repeat 4 74 0 1 1428 342 354 69 106 chr4 110574224 110574527 -45055593 - B4A SINE B4 0 292 1 1 1428 366 388 121 15 chr4 110575034 110575364 -45054756 + L2 LINE L2 2670 3034 -385 1 1428 348 24 0 0 chr4 110576116 110576157 -45053963 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1428 274 297 0 0 chr4 110576157 110576224 -45053896 - RSINE1 SINE B4 -12 153 87 1 1428 189 0 0 0 chr4 110576242 110576263 -45053857 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1 1428 302 169 0 13 chr4 110576292 110576370 -45053750 - L1Md_F2 LINE L1 -2 6580 6504 1 1428 342 322 6 95 chr4 110576402 110576560 -45053560 - B4A SINE B4 -148 144 1 1 1428 215 143 0 39 chr4 110576810 110576861 -45053259 + CT-rich Low_complexity Low_complexity 3 51 0 1 1428 7479 52 9 8 chr4 110577271 110578230 -45051890 + L1Md_F2 LINE L1 5623 6582 0 1 1428 216 319 149 27 chr4 110578276 110578424 -45051696 + MIR3 SINE MIR 25 190 -18 1 1428 459 0 0 0 chr4 110579804 110579855 -45050265 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1428 351 0 0 0 chr4 110579855 110579894 -45050226 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1428 734 153 36 7 chr4 110579894 110580199 -45049921 + GA-rich Low_complexity Low_complexity 1 314 0 1 1428 452 292 143 5 chr4 110580968 110581178 -45048942 + MIR SINE MIR 17 255 -7 1 1428 26 30 0 0 chr4 110581219 110581252 -45048868 + AT_rich Low_complexity Low_complexity 1 33 0 1 1428 463 320 95 46 chr4 110581313 110581575 -45048545 - B4A SINE B4 -16 276 2 1 1428 1614 230 60 50 chr4 110581817 110582220 -45047900 - MTD LTR MaLR -8 411 5 1 1428 206 364 45 0 chr4 110582970 110583036 -45047084 - L2b LINE L2 -78 3297 3229 1 1428 350 312 13 40 chr4 110583036 110583186 -45046934 + Lx9 LINE L1 7323 7468 -176 1 1428 417 39 0 0 chr4 110583187 110583238 -45046882 + (CATA)n Simple_repeat Simple_repeat 3 53 0 1 1428 225 0 0 0 chr4 110583240 110583265 -45046855 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1428 1200 230 90 6 chr4 110583286 110583703 -45046417 - L1M2 LINE L1 -878 5434 4978 1 1428 653 274 155 10 chr4 110583735 110584045 -45046075 + L1M2 LINE L1 4306 4660 -1483 1 1428 264 30 0 0 chr4 110584046 110584079 -45046041 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1 1428 601 284 60 91 chr4 110584188 110584486 -45045634 + B4 SINE B4 4 292 0 1 1428 3084 171 190 70 chr4 110584532 110585327 -45044793 + RMER19B LTR ERVK 1 890 -12 1 1428 318 299 43 25 chr4 110586014 110586175 -45043945 + L1MD LINE L1 3951 4114 -2032 1 1428 507 60 0 0 chr4 110586241 110586308 -45043812 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 1428 203 109 40 80 chr4 110586696 110586746 -45043374 + (TTAGGG)n Simple_repeat Simple_repeat 3 50 0 1 1428 233 371 11 49 chr4 110586811 110586995 -45043125 + MIRb SINE MIR 82 258 -10 1 1428 7717 72 4 2 chr4 110587281 110588632 -45041488 - L1_Mus1 LINE L1 0 6567 5237 1 1428 235 171 63 137 chr4 110588997 110589092 -45041028 - RLTR22_Mus LTR ERVK -691 1117 1030 1 1428 220 244 317 0 chr4 110589723 110589805 -45040315 - MIRc SINE MIR -101 167 60 1 1428 231 188 120 40 chr4 110589954 110590054 -45040066 + Lx8 LINE L1 7361 7468 -5 1 1428 189 261 22 0 chr4 110590614 110590660 -45039460 - L3 LINE CR1 -3 4486 4440 1 1428 185 362 89 38 chr4 110590827 110590985 -45039135 + MIRb SINE MIR 35 200 -68 1 1428 2518 156 11 5 chr4 110591156 110591601 -45038519 + Lx2 LINE L1 6544 6991 -6 1 1428 494 400 0 0 chr4 110592559 110592628 -45037492 + ID SINE ID 3 71 -153 1 1428 450 0 0 0 chr4 110592628 110592678 -45037442 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1428 494 400 0 0 chr4 110592678 110592803 -45037317 + ID_B1 SINE B4 72 196 -28 1 1428 210 410 30 0 chr4 110593648 110593748 -45036372 - MIRc SINE MIR -157 111 9 1 1428 3313 38 0 5 chr4 110594371 110594767 -45035353 - MTA_Mm LTR MaLR -1 395 2 1 1428 922 167 166 5 chr4 110595305 110595498 -45034622 + URR1B DNA MER1_type 2 225 0 1 1428 377 261 80 37 chr4 110595354 110595517 -45034603 - CYRA11_Mm Unknown Y-chromosome -305 312 143 1 1428 435 92 0 0 chr4 110595906 110595971 -45034149 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1428 1353 263 75 21 chr4 110596076 110596464 -45033656 + MTD LTR MaLR 11 419 0 1 1428 222 37 0 0 chr4 110596713 110596740 -45033380 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1428 262 310 48 7 chr4 110596785 110596931 -45033189 - L1ME3B LINE L1 -306 5934 5783 1 1428 595 190 35 0 chr4 110596953 110597095 -45033025 + Lx2B LINE L1 6853 6999 -1 1 1428 258 265 168 24 chr4 110597155 110597364 -45032756 - L1M5 LINE L1 -3650 2496 2258 1 1428 272 188 14 0 chr4 110597792 110597861 -45032259 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1428 656 256 36 12 chr4 110597926 110598092 -45032028 - MTD LTR MaLR 0 419 250 1 1428 961 190 124 5 chr4 110598430 110598631 -45031489 - URR1A DNA MER1_type 0 226 2 1 1428 2470 170 66 0 chr4 110598737 110599179 -45030941 - RMER1A Other Other -16 1014 544 1 1428 34 0 0 0 chr4 110599471 110599505 -45030615 + AT_rich Low_complexity Low_complexity 1 34 0 1 1428 376 320 15 30 chr4 110599505 110599637 -45030483 + B1F1 SINE Alu 13 142 -7 1 1428 272 350 97 16 chr4 110599718 110599904 -45030216 + L2a LINE L2 3225 3425 -1 1 1428 252 293 24 31 chr4 110600905 110601032 -45029088 - Zaphod DNA Tip100 -2219 1812 1687 1 1428 325 377 70 37 chr4 110601533 110601748 -45028372 + MIRb SINE MIR 6 227 -41 1 1428 1360 191 30 109 chr4 110601776 110602106 -45028014 - ORR1B1 LTR MaLR 0 394 91 1 1428 3084 153 67 15 chr4 110602110 110602892 -45027228 - ORR1B1-int LTR MaLR -191 1772 972 1 1428 8972 2 1 0 chr4 110602895 110604558 -45025562 - L1Md_A LINE L1 0 6582 4918 1 1428 1637 194 39 39 chr4 110604558 110604997 -45025123 - ORR1B1-int LTR MaLR -807 1156 718 1 1428 819 183 237 65 chr4 110604956 110605201 -45024919 - MT2B LTR ERVL -314 287 1 1 1428 272 250 197 15 chr4 110605201 110605233 -45024887 - ORR1B1-int LTR MaLR -1334 629 561 1 1428 3158 165 22 27 chr4 110605245 110605836 -45024284 - ORR1B1-int LTR MaLR -1325 638 51 1 1428 189 0 0 0 chr4 110605943 110605964 -45024156 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1428 522 343 65 22 chr4 110605971 110606248 -45023872 - B4 SINE B4 0 292 4 1 1428 2188 167 20 28 chr4 110606264 110606659 -45023461 + ORR1B1 LTR MaLR 3 394 0 1 1428 263 184 20 0 chr4 110606666 110606715 -45023405 + ORR1B1-int LTR MaLR 4 53 -1456 1 1428 755 277 37 63 chr4 110606751 110607021 -45023099 - MTEb LTR MaLR 0 379 117 1 1428 519 254 39 8 chr4 110607021 110607148 -45022972 - ERVL-B4-int LTR ERVL -1472 4242 4112 1 1428 706 244 0 36 chr4 110607148 110607314 -45022806 - ERVL-B4-int LTR ERVL -1569 4192 4033 1 1428 448 180 32 98 chr4 110607369 110607492 -45022628 - RMER1C Other Other -28 1314 1200 1 1428 3122 147 39 161 chr4 110607503 110608283 -45021837 - RMER19A LTR ERVK 0 737 58 1 1428 385 267 27 7 chr4 110608283 110608394 -45021726 - RMER1B Other Other -375 691 519 1 1428 858 310 56 4 chr4 110608404 110608673 -45021447 - ERVL-B4-int LTR ERVL -1817 3897 3615 1 1428 233 274 53 27 chr4 110608685 110608760 -45021360 - MTE-int LTR MaLR -954 626 550 1 1428 354 276 103 65 chr4 110609096 110609175 -45020945 - MTEb LTR MaLR -214 165 81 1 1428 2073 118 12 39 chr4 110609175 110609511 -45020609 - ORR1A4 LTR MaLR -2 327 1 1 1428 354 283 33 58 chr4 110609511 110609586 -45020534 - MTEb LTR MaLR -298 81 5 1 1428 5831 33 3 1 chr4 110609727 110610420 -45019700 - L1Md_F3 LINE L1 -1 6583 5890 1 1428 679 287 79 28 chr4 110610510 110610747 -45019373 + MTE2b LTR MaLR 21 270 -109 2 1428 649 299 23 109 chr4 110610747 110611195 -45018925 + MTE2b LTR MaLR 1 374 -5 2 1428 371 406 89 12 chr4 110611341 110611600 -45018520 - MLT1H LTR MaLR -210 339 61 2 1428 551 340 49 20 chr4 110611613 110611817 -45018303 + B3 SINE B2 1 210 -6 2 1428 266 0 29 0 chr4 110612107 110612141 -45017979 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1428 818 20 0 10 chr4 110612141 110612241 -45017879 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 1428 1762 191 11 27 chr4 110612480 110612845 -45017275 + RLTR15 LTR ERVK 1 359 0 2 1428 394 248 46 73 chr4 110613605 110613714 -45016406 + PB1D10 SINE Alu 7 112 -5 2 1428 567 0 0 0 chr4 110613768 110613831 -45016289 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1428 226 302 8 17 chr4 110614464 110614582 -45015538 + (TA)n Simple_repeat Simple_repeat 2 118 0 2 1428 261 264 100 36 chr4 110614639 110614749 -45015371 - MIRb SINE MIR -75 193 77 2 1428 21 0 0 0 chr4 110615649 110615670 -45014450 + AT_rich Low_complexity Low_complexity 1 21 0 2 1428 249 317 80 15 chr4 110616126 110616389 -45013731 - L1MC LINE L1 -2297 5585 5306 2 1428 483 267 31 12 chr4 110616461 110616624 -45013496 + Lx2B LINE L1 6834 6999 -1 2 1428 467 274 0 0 chr4 110616619 110616725 -45013395 + Lx7 LINE L1 7260 7365 -331 2 1428 390 42 0 0 chr4 110616727 110616775 -45013345 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 1428 2808 188 101 2 chr4 110616777 110617391 -45012729 - Lx9 LINE L1 -15 7629 6955 2 1428 393 306 86 43 chr4 110617662 110617918 -45012202 - L1M5 LINE L1 -1597 4549 4283 2 1428 35 41 0 0 chr4 110618017 110618066 -45012054 + AT_rich Low_complexity Low_complexity 1 49 0 2 1428 1309 212 0 4 chr4 110618083 110618324 -45011796 + Lx2B LINE L1 6573 6812 -188 2 1428 1879 219 17 20 chr4 110618442 110618848 -45011272 + Lx4B LINE L1 6654 7058 0 2 1428 643 326 130 35 chr4 110618882 110619530 -45010590 - L1M5 LINE L1 -2017 4129 3421 2 1428 234 0 0 0 chr4 110619622 110619648 -45010472 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1428 2138 72 0 10 chr4 110621621 110621914 -45008206 + RLTR22_Mus LTR ERVK 1 290 -1518 2 1428 7120 87 12 2 chr4 110621914 110622899 -45007221 + L1Md_F2 LINE L1 5588 6582 0 2 1428 533 147 41 0 chr4 110623375 110623545 -45006575 + GA-rich Low_complexity Low_complexity 2 178 0 2 1428 221 109 22 0 chr4 110623554 110623600 -45006520 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1428 596 291 5 49 chr4 110623740 110623924 -45006196 + B3A SINE B2 5 180 -18 2 1428 192 77 0 0 chr4 110623926 110623952 -45006168 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1428 536 48 0 0 chr4 110624054 110624116 -45006004 - L1_Mus2 LINE L1 -327 6239 6178 2 1428 536 39 13 13 chr4 110624116 110624194 -45005926 + L1_Mus2 LINE L1 6489 6566 0 2 1428 313 373 27 47 chr4 110624367 110624502 -45005618 - L1MEd LINE L1 -4863 1256 1130 2 1428 1124 140 0 5 chr4 110624502 110624689 -45005431 - Lx2 LINE L1 0 6997 6812 2 178 1283 108 27 0 chr4 110624689 110624874 -45005246 - B2_Mm2 SINE B2 -5 190 1 2 1429 313 373 27 47 chr4 110624874 110625038 -45005082 - L1MEd LINE L1 -4990 1129 963 2 1429 1095 57 0 0 chr4 110625512 110625653 -45004467 + B1_Mus1 SINE Alu 8 148 0 2 1429 199 370 0 36 chr4 110625837 110625921 -45004199 + MER5B DNA MER1_type 78 158 -20 2 1429 316 292 104 0 chr4 110627012 110627108 -45003012 + MIRb SINE MIR 55 160 -108 2 1429 21 71 0 0 chr4 110628510 110628552 -45001568 + AT_rich Low_complexity Low_complexity 1 42 0 2 1429 230 159 91 0 chr4 110628681 110628725 -45001395 - RMER30 DNA MER1_type -148 54 7 2 1429 226 204 32 59 chr4 110629217 110629290 -45000830 + L2b LINE L2 3300 3387 0 2 1429 195 273 0 0 chr4 110629314 110629358 -45000762 + MIR SINE MIR 219 262 0 2 1429 219 158 0 0 chr4 110629365 110629403 -45000717 + MIRc SINE MIR 231 268 0 2 1429 333 236 35 0 chr4 110629945 110630119 -45000001 + CT-rich Low_complexity Low_complexity 1 180 0 2 1429 38116 10 4 1 chr4 110632155 110637722 -44992398 + L1Md_A LINE L1 1 5586 -297 2 1429 8897 10 0 0 chr4 110637722 110638718 -44991402 + L1Md_A LINE L1 5587 6582 0 2 1429 369 0 0 0 chr4 110638730 110638771 -44991349 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1429 637 273 43 18 chr4 110638917 110639081 -44991039 - B4 SINE B4 -7 285 118 2 1429 434 320 62 49 chr4 110639093 110639252 -44990868 + L1MDa LINE L1 1425 1587 -5046 2 1429 3123 60 0 0 chr4 110639252 110639650 -44990470 + L1Md_F2 LINE L1 6185 6582 0 2 1429 434 320 62 49 chr4 110639650 110639815 -44990305 + L1MDa LINE L1 1588 1753 -4880 2 1429 300 268 152 0 chr4 110639846 110639916 -44990204 + L1MDa LINE L1 1818 1903 -4730 2 1429 432 0 0 0 chr4 110639916 110639964 -44990156 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1429 300 268 152 0 chr4 110639964 110640031 -44990089 + L1MDa LINE L1 1904 1975 -4658 2 1429 623 233 63 28 chr4 110640056 110640309 -44989811 + Lx5 LINE L1 6750 7040 -18 2 1429 306 0 0 0 chr4 110640310 110640344 -44989776 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2 1429 243 330 96 6 chr4 110640349 110640526 -44989594 + L1MDa LINE L1 1996 2188 -4445 2 1429 237 335 166 13 chr4 110641712 110641863 -44988257 - MIRc SINE MIR -78 190 17 2 1429 317 216 193 7 chr4 110642054 110642189 -44987931 - L1M4 LINE L1 -491 5693 5534 2 1429 222 333 0 0 chr4 110642223 110642283 -44987837 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1429 219 170 0 0 chr4 110642285 110642332 -44987788 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 1429 866 92 7 0 chr4 110642335 110642487 -44987633 + (ACTG)n Simple_repeat Simple_repeat 4 156 0 2 1429 236 347 9 75 chr4 110642946 110643052 -44987068 + MIRb SINE MIR 60 158 -110 2 1429 1443 70 5 0 chr4 110643380 110643566 -44986554 + B2_Mm2 SINE B2 1 187 -8 2 1429 215 339 0 0 chr4 110644208 110644264 -44985856 - L3 LINE CR1 -6 4483 4428 2 1429 935 222 22 9 chr4 110645068 110645291 -44984829 - URR1A DNA MER1_type 0 226 1 2 1429 212 348 69 53 chr4 110645297 110645453 -44984667 - L2c LINE L2 -194 3181 3022 2 1429 489 360 87 35 chr4 110645630 110646238 -44983882 + L2a LINE L2 2685 3420 -6 2 1429 6064 194 51 3 chr4 110646462 110647716 -44982404 - Lx4B LINE L1 -7 7051 5738 2 1429 344 152 51 0 chr4 110647716 110647775 -44982345 + 4.5SRNA scRNA scRNA 5 66 -28 2 1429 5900 192 67 9 chr4 110648015 110649512 -44980608 - Lx5 LINE L1 -8 7042 5435 2 1429 300 53 0 0 chr4 110649512 110649550 -44980570 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1429 3571 141 18 15 chr4 110649550 110649708 -44980412 - Lx5 LINE L1 -443 5434 5277 2 1429 2049 131 0 9 chr4 110649711 110650188 -44979932 + L1_Mus1 LINE L1 4629 4999 -878 2 1429 1305 57 26 15 chr4 110650188 110650383 -44979737 + L1Md_F2 LINE L1 6385 6581 -1 2 1429 455 243 13 34 chr4 110650383 110650397 -44979723 + L1ME2 LINE L1 5879 5890 -274 2 1429 465 136 25 0 chr4 110650468 110650549 -44979571 + L1_Mus2 LINE L1 6483 6565 -1 2 1429 5517 62 4 1 chr4 110650578 110651284 -44978836 + L1_Mus1 LINE L1 5860 6567 0 2 1429 1732 157 10 10 chr4 110651292 110651582 -44978538 + L1_Mur2 LINE L1 4967 5259 -618 2 1429 1056 87 7 0 chr4 110651582 110651720 -44978400 + B1_Mus1 SINE Alu 1 139 -9 2 1429 348 24 0 0 chr4 110651720 110651761 -44978359 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1429 1732 157 10 10 chr4 110651761 110651777 -44978343 + L1_Mur2 LINE L1 5260 5273 -604 2 1429 230 253 157 0 chr4 110651863 110651946 -44978174 - PB1 SINE Alu -2 125 30 2 1429 214 352 0 54 chr4 110652761 110652854 -44977266 - L2a LINE L2 0 3426 3339 2 1429 1094 296 40 6 chr4 110652969 110653295 -44976825 + MLT1A0 LTR MaLR 27 363 -2 2 1429 786 259 128 33 chr4 110653380 110653740 -44976380 + Lx4A LINE L1 6660 7053 -5 2 1429 418 207 81 0 chr4 110653883 110653994 -44976126 - Lx5 LINE L1 -3 7047 6928 2 1429 2952 207 9 4 chr4 110653994 110654538 -44975582 + Lx5 LINE L1 6234 6780 -270 2 1429 927 277 24 16 chr4 110654551 110654797 -44975323 - B4A SINE B4 -44 248 1 2 1429 329 279 0 34 chr4 110655815 110655904 -44974216 + MTE2b LTR MaLR 16 101 -278 2 1429 3037 213 29 23 chr4 110655905 110656558 -44973562 - Lx2B LINE L1 -27 6973 6317 2 1429 1031 297 26 33 chr4 110656559 110656865 -44973255 + MTE2b LTR MaLR 75 378 -1 2 1429 281 75 84 21 chr4 110656898 110656993 -44973127 + (TTTG)n Simple_repeat Simple_repeat 4 104 0 2 1429 290 26 0 25 chr4 110657323 110657363 -44972757 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1429 236 194 15 0 chr4 110658248 110658315 -44971805 + Lx9 LINE L1 7571 7638 -6 2 1429 3424 128 13 2 chr4 110658400 110658954 -44971166 - L1_Mur2 LINE L1 -1337 4540 3981 2 1429 797 122 85 7 chr4 110658950 110659091 -44971029 + Lx4A LINE L1 6737 6888 -170 2 1429 366 129 0 0 chr4 110659239 110659301 -44970819 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1429 292 279 0 12 chr4 110659310 110659390 -44970730 - B4A SINE B4 -10 282 204 2 1429 192 354 80 6 chr4 110659409 110659571 -44970549 - MIRb SINE MIR -39 229 56 2 1429 510 265 77 41 chr4 110660416 110660820 -44969300 - Lx8 LINE L1 -45 7428 7190 2 1429 1779 300 88 16 chr4 110660813 110661501 -44968619 - Lx8 LINE L1 -1722 4421 3684 2 1429 408 242 173 47 chr4 110661501 110661692 -44968428 - B3 SINE B2 0 216 2 2 1429 1779 300 88 16 chr4 110661692 110662425 -44967695 - Lx8 LINE L1 -2460 3683 2898 2 1429 405 0 0 0 chr4 110662529 110662574 -44967546 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1429 290 312 55 55 chr4 110662938 110663158 -44966962 - Lx8 LINE L1 -3239 2904 2685 2 1429 2279 147 0 0 chr4 110663132 110663479 -44966641 - L1_Mm LINE L1 -91 5792 5446 2 1429 3907 75 2 13 chr4 110663518 110664047 -44966073 - L1_Mus1 LINE L1 -1 6566 6044 2 1429 1663 84 0 64 chr4 110664044 110664310 -44965810 + L1_Mus1 LINE L1 6319 6567 0 2 1429 1621 310 42 37 chr4 110664349 110665085 -44965035 - Lx9 LINE L1 -174 7470 6731 2 1429 217 324 29 0 chr4 110665096 110665164 -44964956 - ID4_ SINE ID -4 79 10 2 1429 279 326 94 19 chr4 110665767 110666215 -44963905 - MLT1H LTR MaLR -2 547 25 2 1429 273 338 0 0 chr4 110667401 110667475 -44962645 + L2c LINE L2 3313 3386 -1 2 1429 271 348 14 56 chr4 110667559 110667702 -44962418 + L2b LINE L2 3236 3372 -3 2 1429 317 311 54 84 chr4 110668628 110668867 -44961253 + MIRb SINE MIR 18 249 -19 2 1429 212 336 15 112 chr4 110668954 110669088 -44961032 - MIR SINE MIR -119 143 23 3 1429 194 321 95 0 chr4 110669951 110670035 -44960085 + MIRb SINE MIR 114 205 -63 3 1429 261 327 128 28 chr4 110670844 110671055 -44959065 + MIRc SINE MIR 5 236 -32 3 1429 858 333 14 52 chr4 110671594 110671885 -44958235 + B4A SINE B4 11 290 -2 3 1429 263 331 34 34 chr4 110673510 110673657 -44956463 + MIRb SINE MIR 69 215 -53 3 1429 203 245 52 0 chr4 110675113 110675190 -44954930 + MIRb SINE MIR 98 178 -90 3 1429 252 122 0 0 chr4 110675644 110675685 -44954435 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1429 187 348 14 0 chr4 110676137 110676206 -44953914 + L2c LINE L2 2823 2892 -527 3 1429 277 344 129 35 chr4 110676218 110676474 -44953646 + L2c LINE L2 2961 3240 -147 3 1429 225 0 0 0 chr4 110676650 110676675 -44953445 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1429 217 290 53 82 chr4 110678109 110678237 -44951883 - L2c LINE L2 -33 3354 3212 3 1429 443 181 80 141 chr4 110678449 110678617 -44951503 + Lx4A LINE L1 6908 7058 0 3 1429 315 341 84 12 chr4 110678634 110678800 -44951320 - HAL1 LINE L1 -69 2438 2261 3 1429 1147 250 58 3 chr4 110678801 110679094 -44951026 + Lx9 LINE L1 6693 7001 -643 3 1429 658 296 143 22 chr4 110680087 110680318 -44949802 + MLT1A0 LTR MaLR 1 259 -106 3 1429 1276 204 230 29 chr4 110680339 110680747 -44949373 - Lx9 LINE L1 -12 7632 7143 3 1429 4028 109 15 10 chr4 110680760 110681371 -44948749 - Lx3_Mus LINE L1 0 7009 6396 3 1429 5293 88 4 1 chr4 110681376 110682105 -44948015 - L1_Mur1 LINE L1 -13 5873 5143 3 1429 360 286 41 0 chr4 110682107 110682205 -44947915 - Lx9 LINE L1 -454 7190 7089 3 1429 311 311 11 0 chr4 110682207 110682297 -44947823 + MLT1A0 LTR MaLR 275 365 0 3 1429 792 269 108 70 chr4 110682309 110682681 -44947439 + MLT1A1 LTR MaLR 3 388 -20 3 1429 634 306 176 17 chr4 110683360 110683593 -44946527 - B4 SINE B4 -13 279 10 3 1429 3447 85 13 2 chr4 110683888 110684358 -44945762 - MT2C_Mm LTR ERVL 0 475 1 3 1429 1085 286 105 40 chr4 110685255 110686102 -44944018 + L1M3 LINE L1 4680 5598 -585 3 1429 1167 92 115 0 chr4 110686121 110686295 -44943825 + Lx2 LINE L1 6450 6643 -354 3 1429 1364 122 9 5 chr4 110686295 110686517 -44943603 + Lx2 LINE L1 6775 6997 0 3 1429 24 53 0 0 chr4 110686659 110686697 -44943423 + AT_rich Low_complexity Low_complexity 1 38 0 3 1429 1241 41 0 0 chr4 110686726 110686873 -44943247 + B1_Mm SINE Alu 1 147 0 3 1429 375 268 39 0 chr4 110686911 110687038 -44943082 + L1M3 LINE L1 5652 5783 -388 3 1429 432 0 0 0 chr4 110687038 110687086 -44943034 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1429 486 0 0 0 chr4 110687406 110687460 -44942660 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1429 6351 55 6 12 chr4 110688376 110689211 -44940909 + L1Md_F2 LINE L1 4756 5585 -298 3 1429 7989 46 2 1 chr4 110689212 110690193 -44939927 + L1Md_F2 LINE L1 5587 6568 -14 3 1429 249 0 23 47 chr4 110690198 110690241 -44939879 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1429 889 284 58 78 chr4 110690242 110690845 -44939275 + L1MA4 LINE L1 5476 6066 -231 3 1429 423 0 0 0 chr4 110690898 110690945 -44939175 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1429 671 228 0 16 chr4 110690962 110691091 -44939029 + B1_Mur4 SINE Alu 2 128 -22 3 1429 21 0 0 0 chr4 110693310 110693331 -44936789 + AT_rich Low_complexity Low_complexity 1 21 0 3 1429 196 277 0 21 chr4 110693440 110693488 -44936632 + L2c LINE L2 3328 3374 -13 3 1429 28 86 0 0 chr4 110694791 110694861 -44935259 + AT_rich Low_complexity Low_complexity 1 70 0 3 1429 322 327 62 12 chr4 110695377 110695538 -44934582 - MIR SINE MIR -35 227 59 3 1429 37 23 0 0 chr4 110696406 110696450 -44933670 + AT_rich Low_complexity Low_complexity 1 44 0 3 1429 2890 166 2 8 chr4 110696701 110697216 -44932904 - Lx LINE L1 0 6654 6143 3 1429 334 57 38 0 chr4 110697575 110697628 -44932492 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1429 529 312 12 42 chr4 110697690 110697857 -44932263 + RSINE1 SINE B4 4 165 0 3 1429 1066 154 0 77 chr4 110698162 110698408 -44931712 + Lx LINE L1 6427 6653 -1 3 1429 1082 103 7 0 chr4 110699896 110700042 -44930078 + B1_Mus2 SINE Alu 1 147 0 3 1429 486 287 62 9 chr4 110700608 110700833 -44929287 + L1M2 LINE L1 5075 5311 -832 3 1429 791 221 147 10 chr4 110700844 110701041 -44929079 - MTD LTR MaLR -193 226 3 3 1429 446 313 118 27 chr4 110701107 110701436 -44928684 + L1M2 LINE L1 2518 2876 -3267 3 1429 4179 247 69 39 chr4 110701443 110702755 -44927365 - Lx9 LINE L1 0 7644 6293 3 1429 301 374 21 14 chr4 110702859 110703000 -44927120 + MLT2B3 LTR ERVL 1 142 -412 3 1429 21 0 0 0 chr4 110704011 110704032 -44926088 + AT_rich Low_complexity Low_complexity 1 21 0 3 1429 4582 157 34 8 chr4 110704032 110704827 -44925293 - Lx4A LINE L1 0 7058 6243 3 1429 296 286 59 33 chr4 110705544 110705696 -44924424 + L1_Rod LINE L1 2210 2365 -3482 3 1429 236 236 11 0 chr4 110706025 110706114 -44924006 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 1429 549 308 123 17 chr4 110706114 110706587 -44923533 + L1_Rod LINE L1 2800 3344 -2503 3 1429 3399 85 2 8 chr4 110706573 110707049 -44923071 - Lx3B LINE L1 -592 5294 4822 3 1429 4106 102 40 2 chr4 110707052 110707875 -44922245 + Lx3B LINE L1 5263 6107 -866 3 1429 3122 145 49 6 chr4 110707897 110708423 -44921697 + Lx3B LINE L1 6425 6973 -8 3 1429 521 297 163 36 chr4 110708473 110709063 -44921057 + L1M2 LINE L1 3363 4027 -2116 3 1429 500 0 17 0 chr4 110709076 110709136 -44920984 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 3 1429 614 310 0 60 chr4 110709153 110709321 -44920799 - RSINE1 SINE B4 -2 163 6 3 1429 2191 312 74 17 chr4 110709326 110711093 -44919027 + L1M2 LINE L1 4003 5867 -13 3 1429 232 289 24 12 chr4 110712154 110712238 -44917882 - Charlie13b DNA Charlie -24 488 404 3 1429 218 160 60 0 chr4 110713395 110713445 -44916675 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1429 181 87 0 0 chr4 110713468 110713491 -44916629 + L4 LINE RTE 1670 1692 -337 3 1429 4586 139 13 12 chr4 110713506 110714264 -44915856 - Lx2 LINE L1 0 6997 6239 3 1429 276 380 45 22 chr4 110714342 110714553 -44915567 - MIRb SINE MIR -27 241 16 3 1429 567 266 25 54 chr4 110714807 110715010 -44915110 + RMER30 DNA MER1_type 5 201 -1 3 1429 242 324 119 28 chr4 110715222 110715365 -44914755 - MIRb SINE MIR -29 239 84 3 1429 307 241 12 71 chr4 110715396 110715481 -44914639 - MIRc SINE MIR -115 153 74 3 1429 22 0 0 0 chr4 110716124 110716146 -44913974 + AT_rich Low_complexity Low_complexity 1 22 0 3 1429 347 328 276 32 chr4 110716724 110717064 -44913056 + MLT1F1 LTR MaLR 145 567 -2 3 1429 180 203 169 0 chr4 110717580 110717639 -44912481 - L3b LINE CR1 -246 236 168 3 1429 417 325 93 37 chr4 110717927 110718173 -44911947 + MIR SINE MIR 3 262 0 3 1429 27 0 0 0 chr4 110719098 110719125 -44910995 + AT_rich Low_complexity Low_complexity 1 27 0 3 1429 22 35 0 0 chr4 110719251 110719280 -44910840 + AT_rich Low_complexity Low_complexity 1 29 0 3 1429 363 131 0 0 chr4 110719369 110719430 -44910690 - Lx8 LINE L1 -1 7472 7412 3 1429 196 330 20 39 chr4 110719610 110719713 -44910407 - MIRb SINE MIR -138 130 19 3 1429 219 254 33 17 chr4 110719764 110719824 -44910296 - MIR3 SINE MIR -37 171 111 3 1429 324 200 0 0 chr4 110720210 110720280 -44909840 + CT-rich Low_complexity Low_complexity 2 71 0 3 1429 191 326 50 30 chr4 110720541 110720642 -44909478 - L2b LINE L2 -5 3370 3268 3 1429 251 355 13 0 chr4 110721144 110721220 -44908900 + L2c LINE L2 3281 3357 -30 3 1429 387 302 33 26 chr4 110721711 110721864 -44908256 + MER103 DNA DNA 4 157 -9 3 1429 23 0 0 0 chr4 110722627 110722650 -44907470 + AT_rich Low_complexity Low_complexity 1 23 0 3 1429 1149 327 52 30 chr4 110722731 110723235 -44906885 - FordPrefect DNA Tip100 -225 1458 944 3 1429 353 396 113 47 chr4 110723224 110723481 -44906639 - FordPrefect DNA Tip100 -1229 454 181 3 1429 414 57 0 0 chr4 110723986 110724039 -44906081 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1429 230 371 59 25 chr4 110724043 110724162 -44905958 - MIRb SINE MIR -76 192 70 3 1429 192 309 60 60 chr4 110724847 110724947 -44905173 + MIRb SINE MIR 24 123 -145 3 1429 1361 300 14 17 chr4 110725905 110726387 -44903733 - Lx9 LINE L1 -171 7473 6993 3 1429 324 70 0 0 chr4 110726810 110726853 -44903267 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 1429 491 191 24 18 chr4 110726856 110727021 -44903099 + GA-rich Low_complexity Low_complexity 3 168 0 3 1429 1406 283 77 42 chr4 110727035 110727489 -44902631 - MT2A LTR ERVL -4 529 60 3 1429 360 0 0 0 chr4 110727542 110727582 -44902538 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1429 263 298 35 9 chr4 110727659 110727774 -44902346 - PB1 SINE Alu -8 119 2 3 1429 573 15 0 0 chr4 110728374 110728440 -44901680 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1429 324 0 0 0 chr4 110728657 110728693 -44901427 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 3 1429 4393 176 55 67 chr4 110728742 110729641 -44900479 + RMER19B LTR ERVK 1 888 -14 3 1429 257 268 107 74 chr4 110730415 110730536 -44899584 - L2b LINE L2 -1 3374 3250 3 1429 259 325 95 0 chr4 110731500 110731626 -44898494 - MIRb SINE MIR -71 197 60 3 1429 311 291 81 49 chr4 110731697 110731820 -44898300 - MLT1A1 LTR MaLR -13 395 269 3 1429 4052 63 4 0 chr4 110732381 110732886 -44897234 + L1_Mus1 LINE L1 6059 6565 -2 3 1429 1217 199 44 11 chr4 110733096 110733436 -44896684 - Lx2B LINE L1 -5 6971 6607 3 1429 420 123 0 0 chr4 110733434 110733507 -44896613 + L1_Mur2 LINE L1 3645 3717 -2160 3 1429 1256 166 4 0 chr4 110733495 110733730 -44896390 + L1_Mur2 LINE L1 4090 4325 -1552 3 1429 298 431 25 6 chr4 110733758 110733919 -44896201 + L2 LINE L2 2830 2993 -426 3 1429 443 270 12 170 chr4 110735469 110735728 -44894392 + RLTR22_Mus LTR ERVK 491 708 -1100 3 1429 305 232 150 34 chr4 110735737 110735884 -44894236 + RMER12 LTR ERVK 553 716 -606 3 1429 1180 89 6 11 chr4 110735916 110736097 -44894023 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1429 242 85 16 48 chr4 110736097 110736159 -44893961 + (GAAAA)n Simple_repeat Simple_repeat 1 60 0 3 1429 26 82 0 0 chr4 110736795 110736856 -44893264 + AT_rich Low_complexity Low_complexity 1 61 0 4 1429 1216 48 0 0 chr4 110736976 110737123 -44892997 - B1_Mm SINE Alu 0 147 1 4 1429 380 171 45 0 chr4 110737258 110737346 -44892774 - Lx2 LINE L1 -6 6991 6900 4 1429 5529 54 1 0 chr4 110737507 110738230 -44891890 + L1Md_F2 LINE L1 4862 5585 -298 4 1429 7963 52 5 1 chr4 110738231 110739223 -44890897 + L1Md_F2 LINE L1 5587 6582 0 4 1429 329 385 39 0 chr4 110739848 110739978 -44890142 + MIR3 SINE MIR 23 157 -51 4 1429 288 130 0 0 chr4 110740571 110740617 -44889503 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 4 1429 286 366 76 14 chr4 110740855 110740999 -44889121 - L2 LINE L2 -604 2815 2663 4 1429 6220 194 45 8 chr4 110741463 110742665 -44887455 - Lx5 LINE L1 0 7050 5804 4 1429 7021 148 52 6 chr4 110742665 110742978 -44887142 + L1_Mur2 LINE L1 4424 4735 -1142 4 1429 180 0 0 0 chr4 110742978 110742998 -44887122 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1429 7021 148 52 6 chr4 110742998 110744027 -44886093 + L1_Mur2 LINE L1 4736 5828 -49 4 1429 187 354 48 12 chr4 110745018 110745101 -44885019 + MIRc SINE MIR 26 111 -157 4 1429 348 43 0 0 chr4 110746446 110746492 -44883628 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1429 468 233 87 0 chr4 110746511 110746614 -44883506 - RSINE1 SINE B4 -40 125 14 4 1429 2411 210 90 108 chr4 110746644 110747034 -44883086 + RMER17B LTR ERVK 1 424 -534 4 1429 1358 35 17 0 chr4 110747034 110747208 -44882912 + (TCCCC)n Simple_repeat Simple_repeat 4 180 0 4 1429 2411 210 90 108 chr4 110747208 110747792 -44882328 + RMER17B LTR ERVK 425 958 0 4 1429 2992 32 0 3 chr4 110748145 110748492 -44881628 + ORR1A0 LTR MaLR 1 346 0 4 1429 5760 163 32 25 chr4 110748612 110748885 -44881235 - Lx4B LINE L1 -319 6739 6473 4 1429 1157 57 0 0 chr4 110748885 110749025 -44881095 + B1_Mm SINE Alu 2 141 -6 4 1429 432 0 0 0 chr4 110749027 110749075 -44881045 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 4 1429 5760 155 18 13 chr4 110749075 110750137 -44879983 - Lx4B LINE L1 -586 6472 5385 4 1429 1743 204 26 10 chr4 110750126 110750662 -44879458 - L1VL2 LINE L1 -5930 405 9 4 1429 180 102 20 39 chr4 110750671 110750722 -44879398 + T-rich Low_complexity Low_complexity 1 50 0 4 1429 3111 76 39 2 chr4 110750723 110751157 -44878963 - Lx3_Mus LINE L1 -8 7001 6552 4 1429 3137 156 21 9 chr4 110751154 110751680 -44878440 - Lx3C LINE L1 -8 6968 6437 4 1429 322 317 78 25 chr4 110751697 110751901 -44878219 - Kanga1d DNA Tc2 -246 363 149 4 1429 406 358 71 62 chr4 110752746 110753196 -44876924 - L2 LINE L2 -825 2594 2141 4 1429 216 346 111 53 chr4 110753495 110753855 -44876265 - L2 LINE L2 -1862 1557 1177 4 1429 522 0 0 0 chr4 110754607 110754665 -44875455 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1429 361 345 38 68 chr4 110754998 110755234 -44874886 - MIRb SINE MIR -15 253 25 4 1430 4036 74 0 15 chr4 110755957 110756504 -44873616 + L1Md_F2 LINE L1 6031 6569 -13 4 1430 187 377 35 59 chr4 110757049 110757218 -44872902 - L2b LINE L2 -219 3156 2992 4 1430 364 300 42 28 chr4 110758279 110758423 -44871697 + MIRb SINE MIR 39 184 -84 4 1430 318 352 123 65 chr4 110758555 110758751 -44871369 - LTR81B LTR ERV1? 0 1393 1185 4 1430 4852 24 9 2 chr4 110758751 110759324 -44870796 - L1Md_F3 LINE L1 0 6584 6008 4 1430 318 352 123 65 chr4 110759324 110759574 -44870546 - LTR81B LTR ERV1? -209 1184 922 4 1430 360 0 0 0 chr4 110759932 110759972 -44870148 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1430 610 256 16 83 chr4 110760540 110760732 -44869388 + MTEb LTR MaLR 4 182 -197 4 1430 417 260 71 129 chr4 110760743 110760968 -44869152 + MTEb LTR MaLR 168 379 0 4 1430 235 292 86 55 chr4 110762445 110762608 -44867512 + MLT1H LTR MaLR 110 277 -272 4 1430 455 185 12 0 chr4 110762679 110762760 -44867360 - MTD LTR MaLR 0 419 338 4 1430 455 173 0 24 chr4 110762740 110762823 -44867297 - MTD LTR MaLR -336 83 3 4 1430 471 18 0 0 chr4 110762991 110763047 -44867073 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1430 189 368 130 14 chr4 110764608 110764746 -44865374 + L2b LINE L2 3218 3371 -4 4 1430 302 330 9 36 chr4 110765176 110765286 -44864834 + PB1D10 SINE Alu 10 116 -1 4 1430 264 30 0 0 chr4 110765855 110765888 -44864232 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1430 853 309 116 55 chr4 110766042 110766515 -44863605 - MLT2B1 LTR ERVL -18 502 1 4 1430 262 333 52 44 chr4 110767647 110767782 -44862338 - MIRb SINE MIR -108 160 25 4 1430 427 274 13 76 chr4 110769288 110769446 -44860674 - Lx9 LINE L1 -480 7164 7017 4 1430 447 19 0 0 chr4 110769645 110769697 -44860423 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1430 315 0 0 0 chr4 110769697 110769731 -44860389 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1430 25 0 0 0 chr4 110771691 110771716 -44858404 + AT_rich Low_complexity Low_complexity 1 25 0 4 1430 811 257 5 56 chr4 110771718 110771916 -44858204 - B3A SINE B2 -5 193 6 4 1430 225 312 59 74 chr4 110772226 110772361 -44857759 + L2b LINE L2 3108 3240 -135 4 1430 1084 68 0 0 chr4 110772567 110772700 -44857420 - B1_Mus2 SINE Alu -14 133 1 4 1430 373 350 110 29 chr4 110772846 110773055 -44857065 + MTD LTR MaLR 1 226 -193 4 1430 880 265 11 5 chr4 110773046 110773236 -44856884 + B3 SINE B2 5 195 -21 4 1430 441 0 0 0 chr4 110773244 110773293 -44856827 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1430 521 216 181 9 chr4 110773317 110773485 -44856635 + MTD LTR MaLR 222 405 -14 4 1430 23 86 0 0 chr4 110773546 110773604 -44856516 + AT_rich Low_complexity Low_complexity 1 58 0 4 1430 255 281 65 24 chr4 110773653 110773777 -44856343 - MLT1N2 LTR MaLR 0 562 434 4 1430 261 397 16 8 chr4 110774201 110774323 -44855797 - MIRb SINE MIR -104 164 42 4 1430 23 33 0 0 chr4 110774555 110774585 -44855535 + AT_rich Low_complexity Low_complexity 1 30 0 4 1430 390 115 0 0 chr4 110774585 110774646 -44855474 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1430 447 237 97 0 chr4 110774671 110774764 -44855356 - B3A SINE B2 -95 103 2 4 1430 211 271 33 33 chr4 110774764 110774850 -44855270 + T-rich Low_complexity Low_complexity 36 124 0 4 1430 3562 10 2 0 chr4 110774850 110775245 -44854875 - MTA_Mm LTR MaLR 0 396 1 4 1430 9145 35 4 1 chr4 110775245 110776340 -44853780 - MTA_Mm-int LTR MaLR 0 1098 1 4 1430 3562 10 2 0 chr4 110776340 110776735 -44853385 - MTA_Mm LTR MaLR 0 396 1 4 1430 211 271 33 33 chr4 110776735 110776768 -44853352 + T-rich Low_complexity Low_complexity 5 35 0 4 1430 270 106 0 0 chr4 110776959 110777006 -44853114 + (GCTG)n Simple_repeat Simple_repeat 4 50 0 4 1430 192 268 134 0 chr4 110777172 110777254 -44852866 - MIRb SINE MIR -14 254 162 4 1430 3093 32 3 3 chr4 110778883 110779257 -44850863 - L1Md_F2 LINE L1 -1 6581 6208 4 1430 450 186 104 82 chr4 110779880 110780015 -44850105 + B1F2 SINE Alu 5 142 -7 4 1430 294 350 48 29 chr4 110780434 110780643 -44849477 + L2a LINE L2 2543 2755 -664 4 1430 189 388 16 8 chr4 110780699 110780821 -44849299 + L2a LINE L2 2936 3058 -361 4 1430 194 335 106 50 chr4 110780948 110781127 -44848993 + L2a LINE L2 3226 3414 -12 4 1430 189 0 0 0 chr4 110781206 110781227 -44848893 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1430 295 274 32 0 chr4 110781293 110781388 -44848732 - L2 LINE L2 -933 2486 2389 4 1430 857 303 223 62 chr4 110781539 110782743 -44847377 - BLACKJACK DNA AcHobo -1271 1673 275 4 1430 208 275 130 0 chr4 110782935 110783004 -44847116 - MIRb SINE MIR -70 198 121 4 1430 182 281 77 15 chr4 110785911 110785976 -44844144 + MIR SINE MIR 173 241 -21 4 1430 22 35 0 0 chr4 110786005 110786034 -44844086 + AT_rich Low_complexity Low_complexity 1 29 0 4 1430 3365 35 2 0 chr4 110786138 110786533 -44843587 + MTA_Mm LTR MaLR 1 396 0 4 1430 389 321 106 5 chr4 110787306 110787494 -44842626 + MIR SINE MIR 2 208 -54 4 1430 347 259 25 0 chr4 110788556 110788637 -44841483 + MamRep1879 DNA hAT? 4 86 -130 4 1430 1243 296 53 17 chr4 110789066 110789424 -44840696 - MTE2b LTR MaLR -8 371 1 4 1430 957 311 64 19 chr4 110790031 110790408 -44839712 + Lx8 LINE L1 7063 7456 -17 4 1430 258 296 0 39 chr4 110790477 110790579 -44839541 - MER103 DNA DNA -13 153 56 4 1430 1970 191 3 16 chr4 110790668 110791045 -44839075 - ORR1D1 LTR MaLR 0 374 3 4 1430 283 333 26 26 chr4 110791071 110791188 -44838932 + L2a LINE L2 3286 3402 -24 4 1430 25 65 0 0 chr4 110791773 110791819 -44838301 + AT_rich Low_complexity Low_complexity 1 46 0 4 1430 2194 167 35 20 chr4 110792268 110792666 -44837454 - MTC LTR MaLR 0 421 18 4 1430 1098 306 104 26 chr4 110792651 110793074 -44837046 - MLT1D LTR MaLR -22 483 28 4 1430 195 129 0 0 chr4 110793091 110793122 -44836998 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 4 1430 1428 132 24 16 chr4 110793174 110793421 -44836699 + BGLII_Mus LTR ERVK 1 249 -173 4 1430 368 361 87 19 chr4 110793464 110793625 -44836495 - LTR33 LTR ERVL -332 183 12 4 1430 963 212 117 0 chr4 110793882 110794113 -44836007 + Lx5 LINE L1 6786 7043 -7 4 1430 256 236 13 77 chr4 110794363 110794441 -44835679 + RMER5 LTR ERV1 60 132 -402 4 1430 389 338 26 19 chr4 110794482 110794636 -44835484 + RMER5 LTR ERV1 220 374 -160 4 1430 7513 53 6 2 chr4 110794636 110795573 -44834547 - L1Md_F2 LINE L1 -38 6544 5604 4 1430 362 236 179 0 chr4 110795967 110796073 -44834047 - MLT1J LTR MaLR -387 125 1 4 1430 1010 104 0 0 chr4 110797455 110797599 -44832521 - ORR1A2 LTR MaLR 0 327 184 4 1430 490 107 13 0 chr4 110797596 110797671 -44832449 - ORR1A2-int LTR MaLR -73 1890 1815 4 1430 3840 146 17 16 chr4 110797671 110798318 -44831802 - Lx LINE L1 -232 6422 5775 4 1430 1295 157 21 4 chr4 110798318 110798555 -44831565 + Lx LINE L1 6406 6646 -8 4 1430 408 40 0 0 chr4 110798565 110798615 -44831505 + (TAA)n Simple_repeat Simple_repeat 3 52 0 4 1430 9044 164 58 9 chr4 110798782 110800525 -44829595 - ORR1A2-int LTR MaLR -134 1829 1 4 1430 265 30 0 0 chr4 110800527 110800560 -44829560 - ORR1A2 LTR MaLR -2 324 292 4 1430 322 276 168 23 chr4 110800575 110800831 -44829289 - L1MB7 LINE L1 -245 5939 5647 4 1430 1157 250 89 29 chr4 110800836 110801186 -44828934 - MTE2a LTR MaLR -8 371 1 4 1430 1179 56 0 0 chr4 110801488 110801630 -44828490 + B1_Mm SINE Alu 1 142 -5 4 1430 189 0 0 0 chr4 110801634 110801655 -44828465 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1430 231 284 23 64 chr4 110801706 110801879 -44828241 - L1MD LINE L1 -862 5284 5119 4 1430 1131 216 114 0 chr4 110801917 110802190 -44827930 + MTD LTR MaLR 105 408 -11 4 1430 1159 134 27 0 chr4 110802425 110802612 -44827508 - Lx2 LINE L1 -8 6989 6798 4 1430 185 330 43 11 chr4 110802845 110802937 -44827183 + MIRb SINE MIR 165 259 -9 5 1430 669 13 0 0 chr4 110804162 110804240 -44825880 + (TCTCCC)n Simple_repeat Simple_repeat 2 79 0 5 1430 318 360 54 52 chr4 110805155 110805378 -44824742 - MIR SINE MIR -20 248 25 5 1430 225 311 39 44 chr4 110806083 110806288 -44823832 - Lx9 LINE L1 -22 7622 7419 5 1430 333 0 0 0 chr4 110806305 110806342 -44823778 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1430 2928 258 39 21 chr4 110806345 110807150 -44822970 - Lx9 LINE L1 -132 7512 6694 5 1430 266 316 0 0 chr4 110807187 110807266 -44822854 + GA-rich Low_complexity Low_complexity 2 80 0 5 1430 376 283 92 6 chr4 110807447 110807621 -44822499 + L1M4 LINE L1 5586 5774 -404 5 1430 184 284 242 0 chr4 110807921 110808016 -44822104 - MIRb SINE MIR -47 221 104 5 1430 2760 44 0 0 chr4 110808185 110808523 -44821597 - L1Md_T LINE L1 0 6582 6245 5 1430 262 289 125 52 chr4 110809713 110809849 -44820271 - MIRb SINE MIR -74 194 50 5 1430 255 221 156 59 chr4 110809976 110810111 -44820009 + Lx9 LINE L1 7395 7542 -102 5 1430 684 96 0 0 chr4 110811312 110811427 -44818693 + (TC)n Simple_repeat Simple_repeat 2 116 0 5 1430 483 33 0 0 chr4 110811572 110811633 -44818487 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1430 302 190 38 12 chr4 110812287 110812367 -44817753 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1430 188 311 49 0 chr4 110815387 110815448 -44814672 - MIR SINE MIR -57 151 88 5 1430 210 319 0 21 chr4 110816303 110816399 -44813721 + A-rich Low_complexity Low_complexity 2 95 0 5 1430 232 233 16 32 chr4 110816304 110816366 -44813754 + GA-rich Low_complexity Low_complexity 3 63 0 5 1430 237 367 97 32 chr4 110816444 110816568 -44813552 - L2b LINE L2 0 3375 3244 5 1430 528 319 103 0 chr4 110816678 110816891 -44813229 + MIR SINE MIR 7 241 -21 5 1430 407 312 137 25 chr4 110817713 110817910 -44812210 - L3 LINE CR1 -11 4478 4260 5 1430 394 347 60 99 chr4 110818075 110818459 -44811661 - MLT1J2 LTR MaLR -49 399 31 5 1430 409 379 25 0 chr4 110819082 110819280 -44810840 - MIRb SINE MIR -32 236 34 5 1430 231 349 0 0 chr4 110819323 110819389 -44810731 - L2a LINE L2 -6 3420 3355 5 1430 269 215 0 0 chr4 110819435 110819500 -44810620 - RMER1C Other Other 0 1342 1278 5 1430 1113 357 122 32 chr4 110819756 110820150 -44809970 + L2a LINE L2 1821 2217 -1202 5 1430 1002 244 9 0 chr4 110820150 110820363 -44809757 - B3 SINE B2 -1 215 1 5 1430 1113 357 122 32 chr4 110820363 110820921 -44809199 + L2a LINE L2 2218 2858 -561 5 1430 359 349 84 14 chr4 110821275 110821560 -44808560 + L2a LINE L2 3105 3409 -17 5 1430 294 299 51 10 chr4 110821758 110821856 -44808264 - PB1D10 SINE Alu -13 104 3 5 1430 205 367 69 46 chr4 110822750 110822967 -44807153 - L2a LINE L2 -224 3151 2930 5 1430 898 83 23 23 chr4 110823870 110824042 -44806078 + (TTCTC)n Simple_repeat Simple_repeat 3 174 0 5 1430 210 37 0 0 chr4 110824042 110824068 -44806052 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 5 1430 441 162 0 37 chr4 110824068 110824177 -44805943 + CT-rich Low_complexity Low_complexity 2 106 0 5 1430 545 313 94 32 chr4 110824474 110824590 -44805530 - L1MEc LINE L1 -4037 2363 2240 5 1430 310 330 0 9 chr4 110824590 110824706 -44805414 - PB1D10 SINE Alu -1 116 2 5 1430 545 313 94 32 chr4 110824706 110824995 -44805125 - L1MEc LINE L1 -4161 2239 1933 5 1430 968 261 139 67 chr4 110825227 110825621 -44804499 - L1MEc LINE L1 -4965 1435 1018 5 1430 387 0 0 0 chr4 110825621 110825664 -44804456 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1430 968 261 139 67 chr4 110825664 110826104 -44804016 - L1MEc LINE L1 -5383 1017 542 5 1430 327 359 69 22 chr4 110826136 110826455 -44803665 - L1MEc LINE L1 -5923 477 144 5 1430 1102 242 43 30 chr4 110826463 110826986 -44803134 - Lx2B LINE L1 -2 7056 6522 5 1430 239 254 59 15 chr4 110827589 110827657 -44802463 - PB1D10 SINE Alu -7 110 40 5 1430 228 324 45 70 chr4 110828260 110828384 -44801736 - MIRb SINE MIR -92 176 53 5 1430 223 366 136 28 chr4 110829100 110829277 -44800843 + L2c LINE L2 2918 3113 -274 5 1430 360 310 62 47 chr4 110829366 110829559 -44800561 + L3 LINE CR1 4205 4400 -89 5 1430 192 40 0 0 chr4 110829762 110829787 -44800333 + (TCTCTG)n Simple_repeat Simple_repeat 1 25 0 5 1430 313 328 59 7 chr4 110829835 110829970 -44800150 - MLT1C LTR MaLR -285 182 41 5 1430 253 343 14 0 chr4 110830098 110830109 -44800011 + B4A SINE B4 74 85 -207 5 1430 262 302 34 34 chr4 110830109 110830198 -44799922 + B1F SINE Alu 1 89 -60 5 1430 585 105 0 0 chr4 110830855 110830941 -44799179 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1430 4882 72 9 28 chr4 110831466 110832152 -44797968 - L1_Mus3 LINE L1 -1 6637 5965 5 1430 379 288 37 0 chr4 110833352 110833485 -44796635 + ERVL-E-int LTR ERVL 3362 3567 -2194 5 1430 693 304 37 33 chr4 110833499 110833695 -44796425 + B3 SINE B2 2 199 -17 5 1430 2013 165 101 8 chr4 110833695 110834080 -44796040 + MTC LTR MaLR 1 421 0 5 1430 693 304 37 33 chr4 110834080 110834097 -44796023 + B3 SINE B2 200 216 0 5 1430 322 287 0 0 chr4 110834383 110834470 -44795650 + ERVL-E-int LTR ERVL 3779 3865 -1892 5 1430 366 374 70 0 chr4 110834783 110835040 -44795080 + ERVL-E-int LTR ERVL 4256 4530 -1227 5 1430 404 325 38 28 chr4 110835441 110835653 -44794467 + ERVL-E-int LTR ERVL 4870 5083 -584 5 1430 607 136 0 16 chr4 110835861 110835988 -44794132 - L1_Mus4 LINE L1 0 6636 6512 5 1430 425 222 30 10 chr4 110836003 110836103 -44794017 - PB1D9 SINE Alu -18 102 1 5 1430 2015 167 40 8 chr4 110836529 110836903 -44793217 - Lx4A LINE L1 -110 6948 6563 5 1430 2953 88 0 17 chr4 110837047 110837452 -44792668 - MTB LTR MaLR 0 400 3 5 1430 2674 129 7 20 chr4 110837454 110837897 -44792223 - MTB-int LTR MaLR 0 1098 662 5 1430 210 105 0 0 chr4 110838196 110838234 -44791886 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 1430 3732 151 23 12 chr4 110838353 110838999 -44791121 - MTB-int LTR MaLR -493 765 113 5 1430 7636 48 2 5 chr4 110839034 110840361 -44789759 - L1Md_F2 LINE L1 -1 6581 5261 5 1430 746 184 121 115 chr4 110840362 110840822 -44789298 - RLTR6_Mm LTR ERV1 -68 586 1 5 1430 868 82 37 0 chr4 110840822 110840956 -44789164 - L1_Mm LINE L1 -622 5261 5123 5 1430 38067 26 0 6 chr4 110840953 110846938 -44783182 - L1Md_A LINE L1 -1 6581 640 5 1430 2389 83 0 0 chr4 110846936 110847263 -44782857 - L1_Mm LINE L1 -746 5137 4811 5 1430 444 112 251 8 chr4 110847263 110847376 -44782744 - MTB-int LTR MaLR -1132 126 1 5 1430 2290 111 106 22 chr4 110847376 110847745 -44782375 - MTB LTR MaLR 0 400 1 5 1430 299 346 113 37 chr4 110847755 110848102 -44782018 + LTR16B2 LTR ERVL 90 462 0 5 1430 228 286 89 40 chr4 110848367 110848491 -44781629 - L1M6 LINE L1 -6065 431 302 5 1430 30 27 0 0 chr4 110848890 110848927 -44781193 + AT_rich Low_complexity Low_complexity 1 37 0 5 1430 408 265 0 12 chr4 110848938 110849022 -44781098 + PB1D10 SINE Alu 35 117 0 5 1430 228 122 0 0 chr4 110849238 110849279 -44780841 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1430 247 254 77 141 chr4 110849459 110849583 -44780537 - RMER1C Other Other -13 1329 1199 5 1430 285 29 0 0 chr4 110849583 110849617 -44780503 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1430 247 254 77 141 chr4 110849617 110849712 -44780408 - RMER1C Other Other -144 1198 1124 5 1430 373 222 82 18 chr4 110849630 110849740 -44780380 - Lx8 LINE L1 -154 7319 7203 5 1430 289 295 13 0 chr4 110849979 110850057 -44780063 - ID4 SINE ID 0 83 5 5 1430 383 327 19 0 chr4 110851151 110851255 -44778865 + MIRb SINE MIR 40 145 -123 5 1430 216 0 0 0 chr4 110851432 110851456 -44778664 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1430 218 280 13 26 chr4 110851555 110851632 -44778488 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 5 1430 798 254 29 104 chr4 110851652 110851959 -44778161 - B4A SINE B4 -7 285 2 5 1430 204 67 0 0 chr4 110851987 110852017 -44778103 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1430 199 323 0 0 chr4 110852581 110852643 -44777477 + MIRm SINE MIR 98 159 -117 5 1430 180 0 0 0 chr4 110853152 110853172 -44776948 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1430 231 292 42 0 chr4 110853209 110853305 -44776815 + L1MA6 LINE L1 5836 5935 -365 5 1430 1172 82 0 0 chr4 110853476 110853623 -44776497 + B1_Mus2 SINE Alu 1 147 0 5 1430 621 101 0 0 chr4 110853638 110853737 -44776383 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5 1430 23987 25 0 0 chr4 110854532 110857501 -44772619 + L1Md_T LINE L1 2618 5586 -297 5 1430 8945 10 0 0 chr4 110857501 110858497 -44771623 + L1Md_T LINE L1 5587 6582 0 5 1430 314 332 117 53 chr4 110858667 110858719 -44771401 + L2c LINE L2 2764 2823 -596 5 1430 1915 205 255 10 chr4 110858719 110859311 -44770809 + RMER19A LTR ERVK 1 737 0 5 1430 314 332 117 53 chr4 110859311 110859522 -44770598 + L2c LINE L2 2824 3044 -375 5 1430 192 40 0 0 chr4 110860341 110860366 -44769754 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1430 181 276 52 13 chr4 110861706 110861783 -44768337 + L2c LINE L2 3252 3331 -56 5 1430 361 291 100 23 chr4 110861794 110861924 -44768196 - B1_Mur3 SINE Alu -9 140 1 5 1430 402 134 0 0 chr4 110862040 110862107 -44768013 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 5 1430 261 295 140 29 chr4 110862163 110862334 -44767786 - L2 LINE L2 -1212 2207 2018 5 1430 189 0 0 0 chr4 110862766 110862787 -44767333 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1430 2231 85 6 29 chr4 110863147 110863487 -44766633 - L1Md_F2 LINE L1 -2 6580 6249 5 1430 345 159 0 0 chr4 110863694 110863757 -44766363 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1430 25 0 0 0 chr4 110863936 110863961 -44766159 + AT_rich Low_complexity Low_complexity 1 25 0 5 1430 186 324 216 0 chr4 110865247 110865358 -44764762 - MIRb SINE MIR -113 155 21 5 1430 218 89 44 0 chr4 110865933 110865978 -44764142 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1430 3561 43 2 5 chr4 110866040 110866483 -44763637 - L1Md_F2 LINE L1 0 6582 6141 5 1430 686 281 53 75 chr4 110867121 110867402 -44762718 - ORR1E LTR MaLR 0 359 85 5 1430 310 371 35 61 chr4 110867643 110867841 -44762279 - L2c LINE L2 -44 3343 3151 5 1430 1205 346 119 17 chr4 110868078 110868288 -44761832 - FordPrefect DNA Tip100 -23 1660 1416 5 1430 399 41 0 0 chr4 110868288 110868337 -44761783 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1430 1205 346 119 17 chr4 110868337 110868888 -44761232 - FordPrefect DNA Tip100 -268 1415 822 5 1430 235 295 115 0 chr4 110869197 110869266 -44760854 - FordPrefect DNA Tip100 -1386 297 220 5 1430 402 298 81 81 chr4 110869266 110869438 -44760682 - MER45A DNA Tip100 0 178 7 5 1430 2121 182 47 10 chr4 110869500 110869883 -44760237 - MTC LTR MaLR -24 397 1 5 1430 218 344 108 54 chr4 110870175 110870452 -44759668 - L2c LINE L2 -414 3005 2714 5 1430 216 162 0 0 chr4 110870607 110870644 -44759476 + (TAG)n Simple_repeat Simple_repeat 2 38 0 5 1430 971 305 23 103 chr4 110870878 110871154 -44758966 + Lx7 LINE L1 6820 7097 -599 5 1430 668 244 198 6 chr4 110871154 110871331 -44758789 + B3 SINE B2 1 211 -5 5 1430 971 305 23 103 chr4 110871331 110871577 -44758543 + Lx7 LINE L1 7098 7300 -396 5 1430 665 238 159 6 chr4 110871625 110871807 -44758313 - B3 SINE B2 -6 210 1 5 1430 22 0 0 0 chr4 110872221 110872243 -44757877 + AT_rich Low_complexity Low_complexity 1 22 0 6 1430 402 272 50 35 chr4 110872307 110872442 -44757678 - PB1D7 SINE Alu -14 135 1 6 1430 212 260 100 26 chr4 110873107 110873210 -44756910 - MIRb SINE MIR -116 152 40 6 1430 215 349 7 73 chr4 110873637 110873773 -44756347 + MIR SINE MIR 28 154 -108 6 1430 430 353 141 42 chr4 110875237 110875663 -44754457 + MLT1N2 LTR MaLR 76 543 -19 6 1430 296 318 121 48 chr4 110876004 110876252 -44753868 + L2a LINE L2 3161 3426 0 6 1430 235 354 117 8 chr4 110876412 110876540 -44753580 + MIRb SINE MIR 34 175 -93 6 1430 480 346 79 38 chr4 110876717 110876984 -44753136 - MLT1A0 LTR MaLR -78 287 10 6 1430 192 224 0 0 chr4 110877304 110877371 -44752749 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1430 241 282 14 14 chr4 110877624 110877696 -44752424 - LTR78 LTR ERV1 -156 1148 1077 6 1430 328 212 91 97 chr4 110877972 110878162 -44751958 + MIR SINE MIR 81 262 -6 6 1430 1722 102 8 4 chr4 110878387 110878652 -44751468 + L1_Mus3 LINE L1 6326 6591 -47 6 1430 2978 57 0 0 chr4 110878651 110879088 -44751032 + L1Md_T LINE L1 5536 5972 -594 6 1430 10160 26 1 0 chr4 110879071 110880325 -44749795 + L1Md_T LINE L1 4332 5586 -297 6 1430 9056 4 0 0 chr4 110880325 110881321 -44748799 + L1Md_T LINE L1 5587 6582 0 6 1430 399 121 0 0 chr4 110881340 110881416 -44748704 + L1_Mus2 LINE L1 5940 6015 -552 6 1430 267 118 0 0 chr4 110881403 110881454 -44748666 + Lx LINE L1 6597 6647 -7 6 1430 190 67 31 77 chr4 110881593 110881658 -44748462 + (CAA)n Simple_repeat Simple_repeat 2 63 0 6 1430 186 103 0 0 chr4 110881700 110881729 -44748391 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 6 1430 255 140 0 0 chr4 110882295 110882345 -44747775 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 6 1430 758 213 65 56 chr4 110882813 110883027 -44747093 + B3 SINE B2 1 216 0 6 1430 189 0 0 0 chr4 110883704 110883725 -44746395 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1430 504 0 0 0 chr4 110883725 110883780 -44746340 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1430 330 26 0 0 chr4 110883882 110883921 -44746199 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1430 378 94 0 0 chr4 110883921 110883985 -44746135 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1430 235 359 150 76 chr4 110884310 110884717 -44745403 - L2b LINE L2 -5 3370 2934 6 1430 180 347 0 40 chr4 110885168 110885243 -44744877 + MIRb SINE MIR 116 187 -81 6 1430 486 0 0 0 chr4 110885248 110885302 -44744818 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1430 432 0 0 0 chr4 110885302 110885349 -44744771 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1430 228 380 108 38 chr4 110885534 110885720 -44744400 - ORR1E LTR MaLR -160 199 1 6 1430 197 243 14 0 chr4 110886732 110886802 -44743318 + GA-rich Low_complexity Low_complexity 2 72 0 6 1431 189 0 0 0 chr4 110887220 110887241 -44742879 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1431 1738 238 47 0 chr4 110887296 110887683 -44742437 + MTD LTR MaLR 1 405 -14 6 1431 227 250 0 160 chr4 110888053 110888153 -44741967 + L2c LINE L2 3248 3331 -56 6 1431 259 349 73 21 chr4 110888747 110888915 -44741205 - MIR SINE MIR -36 232 56 6 1431 285 29 0 0 chr4 110889037 110889071 -44741049 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1431 823 173 12 0 chr4 110889071 110889239 -44740881 + GA-rich Low_complexity Low_complexity 2 171 0 6 1431 311 208 44 15 chr4 110889241 110889326 -44740794 - B3 SINE B2 -65 133 40 6 1431 262 343 45 45 chr4 110889426 110889637 -44740483 - MIRc SINE MIR -38 224 11 6 1431 1826 36 0 0 chr4 110889696 110889917 -44740203 - L1Md_F2 LINE L1 -1 6581 6361 6 1431 278 358 80 0 chr4 110890155 110890306 -44739814 + MIRb SINE MIR 38 200 -68 6 1431 229 317 8 119 chr4 110890711 110890829 -44739291 - MamGypLTR3 LTR Gypsy -405 434 330 6 1431 235 394 29 0 chr4 110891604 110891708 -44738412 - MER20 DNA MER1_type 0 219 113 6 1431 4213 55 36 16 chr4 110891892 110892441 -44737679 + LTRIS2 LTR ERV1 5 564 0 6 1431 201 143 0 0 chr4 110892515 110892550 -44737570 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1431 231 350 122 27 chr4 110893097 110893285 -44736835 + MIR SINE MIR 32 237 -25 6 1431 212 324 148 17 chr4 110893573 110893749 -44736371 + L2c LINE L2 3039 3237 -150 6 1431 359 286 185 18 chr4 110893971 110894174 -44735946 - MIRb SINE MIR -6 256 27 6 1431 275 292 105 85 chr4 110895622 110895737 -44734383 - LTR79 LTR ERVL -88 439 305 6 1431 1233 82 0 0 chr4 110895737 110895908 -44734212 + (GA)n Simple_repeat Simple_repeat 1 171 0 6 1431 275 292 105 85 chr4 110895908 110896050 -44734070 - LTR79 LTR ERVL -223 304 178 6 1431 206 333 62 28 chr4 110896570 110896749 -44733371 - L2 LINE L2 -821 2598 2414 6 1431 198 0 0 0 chr4 110897620 110897642 -44732478 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 6 1431 203 271 34 0 chr4 110897674 110897733 -44732387 + L3 LINE CR1 4300 4360 -129 6 1431 337 310 99 15 chr4 110897734 110897865 -44732255 + L3 LINE CR1 4316 4457 -32 6 1431 216 315 0 0 chr4 110900229 110900302 -44729818 - MIRc SINE MIR -8 260 188 6 1431 598 264 21 0 chr4 110901034 110901178 -44728942 + B1_Mur1 SINE Alu 1 147 -2 6 1431 183 329 144 18 chr4 110901279 110901446 -44728674 - L2 LINE L2 -467 2952 2765 6 1431 189 0 0 0 chr4 110901746 110901767 -44728353 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 1431 333 0 0 0 chr4 110901789 110901826 -44728294 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1431 276 202 67 0 chr4 110901839 110901928 -44728192 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1431 1305 251 67 36 chr4 110902720 110903080 -44727040 - MTD LTR MaLR -14 405 35 6 1431 297 245 87 0 chr4 110903944 110904036 -44726084 - MIR SINE MIR -148 120 16 6 1431 212 343 71 36 chr4 110904381 110904493 -44725627 + L3 LINE CR1 4290 4405 -84 6 1431 198 0 0 0 chr4 110905574 110905596 -44724524 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1431 1060 103 0 0 chr4 110905596 110905741 -44724379 - B1_Mus2 SINE Alu 0 147 3 6 1431 332 370 24 31 chr4 110906068 110906322 -44723798 - Zaphod DNA Tip100 0 4031 3780 6 1431 33 0 0 0 chr4 110906323 110906356 -44723764 + AT_rich Low_complexity Low_complexity 1 33 0 6 1431 707 323 69 52 chr4 110906434 110906780 -44723340 - ORR1E LTR MaLR -7 352 1 6 1431 198 366 35 35 chr4 110907355 110907471 -44722649 + MIRc SINE MIR 30 145 -123 6 1431 307 304 109 0 chr4 110907809 110907901 -44722219 + PB1 SINE Alu 1 102 -25 6 1431 1292 249 144 11 chr4 110907961 110908314 -44721806 + MTD LTR MaLR 5 404 -15 6 1431 26 50 0 0 chr4 110908778 110908818 -44721302 + AT_rich Low_complexity Low_complexity 1 40 0 6 1431 240 154 62 0 chr4 110908893 110908958 -44721162 + G-rich Low_complexity Low_complexity 3 71 0 6 1431 914 140 0 22 chr4 110908971 110909154 -44720966 + GA-rich Low_complexity Low_complexity 2 180 0 6 1431 1214 95 0 6 chr4 110909154 110909334 -44720786 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1431 577 142 59 6 chr4 110909357 110909527 -44720593 + GA-rich Low_complexity Low_complexity 1 179 0 6 1431 212 301 0 67 chr4 110909780 110909869 -44720251 + MIRb SINE MIR 11 100 -168 6 1431 279 182 18 0 chr4 110909869 110909924 -44720196 - MTEa LTR MaLR 0 379 324 6 1431 8577 5 0 0 chr4 110910010 110911431 -44718689 - L1Md_A LINE L1 0 6582 5162 6 1431 36207 30 0 1 chr4 110911425 110917846 -44712274 - L1Md_T LINE L1 0 6585 71 6 1431 33457 4 0 0 chr4 110917847 110922808 -44707312 - L1Md_A LINE L1 -708 5175 214 6 1431 250 301 0 103 chr4 110922901 110923027 -44707093 - ORR1D1 LTR MaLR -261 113 1 6 1431 212 330 125 0 chr4 110923074 110923162 -44706958 + MIR SINE MIR 139 237 -25 6 1431 790 339 16 19 chr4 110923196 110923512 -44706608 - MER44B DNA MER2_type -2 548 234 6 1431 1012 257 63 89 chr4 110923527 110923907 -44706213 - MTE2a LTR MaLR -5 374 5 6 1431 568 320 77 6 chr4 110923913 110924095 -44706025 - MER44B DNA MER2_type -322 228 34 6 1431 180 125 0 0 chr4 110924896 110924928 -44705192 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1431 342 282 29 114 chr4 110925165 110925305 -44704815 + MIRb SINE MIR 85 212 -50 6 1431 460 301 14 75 chr4 110926006 110926153 -44703967 + MER20 DNA MER1_type 1 138 -81 6 1431 207 267 50 0 chr4 110926345 110926405 -44703715 + MIRc SINE MIR 2 64 -204 6 1431 285 316 109 20 chr4 110927172 110927377 -44702743 + MIRc SINE MIR 29 262 0 6 1431 276 337 17 9 chr4 110927650 110927799 -44702321 - MLT1A1 LTR MaLR -32 435 267 6 1431 21 0 0 0 chr4 110927806 110927827 -44702293 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 283 293 106 57 chr4 110928605 110928746 -44701374 + MIRc SINE MIR 71 218 -50 6 1431 27 0 0 0 chr4 110929066 110929093 -44701027 + AT_rich Low_complexity Low_complexity 1 27 0 6 1431 375 298 173 0 chr4 110929434 110929625 -44700495 - L1ME4a LINE L1 -251 5873 5650 6 1431 266 320 87 10 chr4 110930343 110930447 -44699673 - L2c LINE L2 -2 3385 3274 6 1431 204 309 95 11 chr4 110931186 110931281 -44698839 + MIRm SINE MIR 48 150 -126 6 1431 432 254 36 22 chr4 110932804 110932941 -44697179 + RLTR15 LTR ERVK 1 139 -220 6 1431 458 196 0 10 chr4 110932951 110933054 -44697066 + G-rich Low_complexity Low_complexity 4 105 0 6 1431 4108 67 48 11 chr4 110933164 110933721 -44696399 + L1Md_F2 LINE L1 6004 6581 -1 6 1431 1184 61 0 7 chr4 110933729 110933877 -44696243 + B1_Mus1 SINE Alu 2 148 0 6 1431 619 337 97 52 chr4 110933949 110934218 -44695902 - B4 SINE B4 -11 281 1 6 1431 423 56 0 0 chr4 110934503 110934557 -44695563 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1431 318 300 0 11 chr4 110936177 110936268 -44693852 - MER5B DNA MER1_type -88 90 1 6 1431 511 308 8 0 chr4 110937597 110937727 -44692393 - RSINE1 SINE B4 -32 133 3 6 1431 872 226 58 39 chr4 110938505 110938712 -44691408 + ORR1D2 LTR MaLR 1 211 -159 7 1431 4715 14 0 0 chr4 110938712 110939277 -44690843 + L1Md_A LINE L1 5022 5586 -297 7 1431 8697 21 0 0 chr4 110939278 110940273 -44689847 + L1Md_A LINE L1 5588 6582 0 7 1431 322 214 56 14 chr4 110940291 110940362 -44689758 + ORR1D2 LTR MaLR 229 302 -57 7 1431 3490 195 87 81 chr4 110940374 110941316 -44688804 - RMER1B Other Other -9 1057 110 7 1431 346 248 102 16 chr4 110941511 110941638 -44688482 + ORR1D2 LTR MaLR 233 370 0 7 1431 579 74 0 0 chr4 110941874 110941955 -44688165 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1431 1190 333 64 52 chr4 110941955 110942390 -44687730 - Lx8 LINE L1 -1561 5912 5458 7 1431 1041 150 0 0 chr4 110942390 110942570 -44687550 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1431 1338 297 44 55 chr4 110942570 110943547 -44686573 - Lx8 LINE L1 -423 5457 4495 7 1431 2788 31 2 234 chr4 110943548 110944056 -44686064 - RLTR10 LTR ERVK 0 390 1 7 1431 16723 19 3 50 chr4 110944058 110946098 -44684022 - RLTR10-int LTR ERVK -3 1984 41 7 1431 2788 31 2 234 chr4 110946108 110946616 -44683504 - RLTR10 LTR ERVK 0 390 1 7 1431 466 288 44 17 chr4 110946798 110946974 -44683146 - Lx8 LINE L1 -1991 4155 3974 7 1431 1346 241 48 62 chr4 110946977 110947068 -44683052 + ORR1D2 LTR MaLR 2 71 -299 7 1431 4416 30 0 18 chr4 110947068 110947574 -44682546 - L1Md_F2 LINE L1 0 6582 6086 7 1431 1346 241 48 62 chr4 110947574 110947854 -44682266 + ORR1D2 LTR MaLR 72 368 -2 7 1431 255 268 23 23 chr4 110947855 110947943 -44682177 - L1M4 LINE L1 -2167 3979 3892 7 1431 2096 300 71 41 chr4 110948196 110949042 -44681078 + Lx8 LINE L1 6592 7462 -11 7 1431 372 103 0 0 chr4 110949414 110949472 -44680648 - B1_Mm SINE Alu 0 147 90 7 1431 553 158 0 0 chr4 110949468 110949569 -44680551 + RLTR22_Mur LTR ERVK 268 368 -1480 7 1431 839 158 20 0 chr4 110949546 110949692 -44680428 + URR1A DNA MER1_type 78 226 0 7 1431 481 106 11 23 chr4 110949872 110949959 -44680161 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 7 1431 9940 81 23 3 chr4 110950276 110951684 -44678436 + Lx3_Mus LINE L1 5557 6993 -16 7 1431 22 0 0 0 chr4 110951685 110951707 -44678413 + AT_rich Low_complexity Low_complexity 1 22 0 7 1431 487 304 66 28 chr4 110953506 110953719 -44676401 + MIRb SINE MIR 29 249 -19 7 1431 342 346 124 19 chr4 110955063 110955328 -44674792 + L2a LINE L2 3102 3394 -32 7 1431 784 233 324 7 chr4 110955376 110955666 -44674454 - ORR1C2 LTR MaLR -2 382 1 7 1431 512 333 6 6 chr4 110955867 110956017 -44674103 + Lx8 LINE L1 7072 7222 -251 7 1431 3591 73 2 11 chr4 110956017 110956473 -44673647 + L1Md_F2 LINE L1 6130 6581 -1 7 1431 512 333 6 6 chr4 110956473 110956485 -44673635 + Lx8 LINE L1 7223 7233 -240 7 1431 768 50 39 20 chr4 110956478 110956580 -44673540 - L1_Mus3 LINE L1 -211 6427 6324 7 1431 203 0 37 0 chr4 110956580 110956607 -44673513 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1431 410 0 20 0 chr4 110956842 110956892 -44673228 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 7 1431 211 229 0 0 chr4 110957657 110957705 -44672415 - MIR SINE MIR -59 203 156 7 1431 188 364 26 0 chr4 110958277 110958354 -44671766 + L2c LINE L2 3286 3364 -23 7 1431 415 213 263 38 chr4 110959116 110959340 -44670780 - MER2 DNA MER2_type -46 299 26 7 1431 984 294 107 9 chr4 110959605 110960071 -44670049 - L1ME1 LINE L1 -283 5896 5385 7 1431 1463 178 36 15 chr4 110960082 110960356 -44669764 - ORR1D1 LTR MaLR -60 314 35 7 1431 1300 293 27 32 chr4 110960364 110960635 -44669485 - Lx7 LINE L1 -389 7307 7041 7 1431 5945 49 4 4 chr4 110960635 110961329 -44668791 - L1Md_F2 LINE L1 -1 6581 5888 7 1431 1300 293 27 32 chr4 110961329 110961469 -44668651 - Lx7 LINE L1 -656 7040 6898 7 1431 942 289 106 33 chr4 110961544 110961689 -44668431 - L1ME1 LINE L1 -858 5288 5146 7 1431 559 250 220 6 chr4 110961689 110961862 -44668258 + B3 SINE B2 1 210 -6 7 1431 1009 285 66 23 chr4 110961862 110962255 -44667865 - L1ME1 LINE L1 -1001 5145 4698 7 1431 2184 89 0 38 chr4 110962255 110962548 -44667572 + L1_Mus2 LINE L1 6284 6565 -1 7 1431 1009 283 52 20 chr4 110962548 110962656 -44667464 - L1ME1 LINE L1 -1449 4697 4594 7 1431 243 189 0 0 chr4 110964030 110964083 -44666037 + CT-rich Low_complexity Low_complexity 3 55 0 7 1431 350 260 47 19 chr4 110964280 110964386 -44665734 + PB1D9 SINE Alu 12 120 0 7 1431 349 248 20 23 chr4 110964385 110964408 -44665712 + ID_B1 SINE B4 70 120 -104 7 1431 325 217 17 0 chr4 110964408 110964468 -44665652 + B1F2 SINE Alu 1 61 -88 7 1431 349 248 20 23 chr4 110964468 110964484 -44665636 + ID_B1 SINE B4 121 160 -64 7 1431 763 165 24 0 chr4 110964490 110964617 -44665503 + B1_Mus2 SINE Alu 6 135 -12 7 1431 263 314 24 12 chr4 110964703 110964788 -44665332 - ID4 SINE ID -62 90 5 7 1431 21 0 0 0 chr4 110964791 110964812 -44665308 + AT_rich Low_complexity Low_complexity 1 21 0 7 1431 201 312 127 45 chr4 110965321 110965455 -44664665 + L2a LINE L2 3276 3420 -6 7 1431 223 200 50 0 chr4 110965996 110966056 -44664064 + CT-rich Low_complexity Low_complexity 2 64 0 7 1431 753 270 159 28 chr4 110966160 110966411 -44663709 + B4A SINE B4 3 286 -6 7 1431 238 213 51 51 chr4 110968161 110968240 -44661880 - L1ME4a LINE L1 -62 6062 5984 7 1431 306 333 142 10 chr4 110968477 110968674 -44661446 + MIRb SINE MIR 37 259 -9 7 1431 322 260 130 0 chr4 110968693 110968793 -44661327 - L1ME4a LINE L1 -407 5717 5605 7 1431 597 310 102 48 chr4 110968962 110969297 -44660823 - MLT1A0 LTR MaLR -12 353 1 7 1431 387 0 0 0 chr4 110969534 110969577 -44660543 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1431 466 340 68 65 chr4 110969605 110969945 -44660175 + MLT1C LTR MaLR 3 343 -124 7 1431 324 347 119 30 chr4 110970367 110970569 -44659551 - MamGypLTR1a LTR Gypsy -555 229 10 7 1431 805 310 38 47 chr4 110972554 110972919 -44657201 - MLT1A0 LTR MaLR -2 372 11 7 1431 800 315 18 36 chr4 110973216 110973493 -44656627 + B4A SINE B4 15 286 -6 7 1431 228 302 57 65 chr4 110973590 110973714 -44656406 - L2 LINE L2 -866 2553 2431 7 1431 471 301 35 35 chr4 110973714 110973855 -44656265 + B1F SINE Alu 1 141 -8 7 1431 778 339 140 28 chr4 110973877 110974675 -44655445 - L2 LINE L2 -987 2432 1545 7 1431 3374 55 8 0 chr4 110976258 110976655 -44653465 + MTB LTR MaLR 1 400 0 7 1431 190 382 39 56 chr4 110976852 110977085 -44653035 + L2c LINE L2 2949 3177 -210 7 1431 576 345 122 8 chr4 110977581 110977818 -44652302 + MER45C DNA Tip100 27 290 -663 7 1431 811 357 80 60 chr4 110977798 110978311 -44651809 + MER45C DNA Tip100 424 946 -7 7 1431 399 317 84 21 chr4 110978508 110978698 -44651422 - MER58B DNA MER1_type -111 230 29 7 1431 483 18 0 0 chr4 110978711 110978767 -44651353 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1431 249 180 0 0 chr4 110978767 110978817 -44651303 + CT-rich Low_complexity Low_complexity 4 53 0 7 1431 633 219 42 0 chr4 110978882 110979001 -44651119 + B1_Mur2 SINE Alu 7 130 -19 7 1431 23 0 0 0 chr4 110979582 110979605 -44650515 + AT_rich Low_complexity Low_complexity 1 23 0 7 1431 353 318 72 97 chr4 110980218 110980614 -44649506 - L2b LINE L2 0 3375 3015 7 1431 385 261 118 29 chr4 110982263 110982508 -44647612 + L1M3f LINE L1 925 1191 -4137 7 1431 349 278 0 0 chr4 110982508 110982598 -44647522 + Lx8 LINE L1 6904 6993 -480 7 1431 934 252 134 39 chr4 110982614 110983002 -44647118 + Lx8 LINE L1 7047 7471 -2 7 1431 1151 266 89 39 chr4 110983909 110984333 -44645787 + L1M3f LINE L1 2838 3281 -3044 7 1431 419 253 0 0 chr4 110984333 110984412 -44645708 - ID4 SINE ID -4 79 1 7 1431 1151 266 89 39 chr4 110984412 110984563 -44645557 + L1M3f LINE L1 3282 3445 -2880 7 1431 221 0 35 0 chr4 110984563 110984592 -44645528 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1431 648 203 20 119 chr4 110984631 110984832 -44645288 + L1MA8 LINE L1 5638 5818 -473 7 1431 4483 142 3 33 chr4 110984845 110984973 -44645147 + Lx2B LINE L1 5175 5291 -595 7 1431 1258 68 0 0 chr4 110984973 110985120 -44645000 + B1_Mm SINE Alu 1 147 0 7 1431 9792 116 11 9 chr4 110985120 110986827 -44643293 + Lx2B LINE L1 5292 6999 -1 7 1431 869 247 172 13 chr4 110986834 110987146 -44642974 + L1MA8 LINE L1 5831 6188 -103 7 1431 1422 264 73 15 chr4 110987146 110987542 -44642578 + MTD LTR MaLR 1 419 0 7 1431 869 247 172 13 chr4 110987542 110987606 -44642514 + L1MA8 LINE L1 6189 6267 -24 7 1431 592 328 67 36 chr4 110988119 110988594 -44641526 + L1ME4a LINE L1 5411 5900 -224 7 1431 975 190 22 79 chr4 110988807 110989035 -44641085 - B3 SINE B2 0 216 2 7 1431 181 278 36 18 chr4 110989127 110989182 -44640938 + MIRc SINE MIR 108 163 -105 7 1431 197 265 20 0 chr4 110990605 110990654 -44639466 - MIRb SINE MIR -159 109 60 7 1431 1672 290 127 11 chr4 110990732 110991346 -44638774 - Lx8 LINE L1 -1 7472 6788 7 1431 500 255 6 0 chr4 110991355 110991516 -44638604 + (TA)n Simple_repeat Simple_repeat 2 163 0 7 1431 3263 179 45 16 chr4 110991595 110992157 -44637963 - Lx5 LINE L1 0 7050 6473 7 1431 10964 130 17 24 chr4 110993250 110995056 -44635064 - L1_Mur2 LINE L1 -784 5093 3301 7 1431 2054 192 4 20 chr4 110995054 110995238 -44634882 - L1_Mur2 LINE L1 -4231 1646 1470 7 1431 3644 20 2 20 chr4 110995238 110995641 -44634479 + MTA_Mm LTR MaLR 1 396 0 7 1431 2054 183 17 22 chr4 110995641 110996197 -44633923 - L1_Mur2 LINE L1 -4408 1469 915 7 1431 818 97 20 14 chr4 110996585 110996731 -44633389 - Lx3_Mus LINE L1 0 7009 6863 7 1431 22 0 0 0 chr4 110996738 110996760 -44633360 + AT_rich Low_complexity Low_complexity 1 22 0 7 1431 185 94 0 30 chr4 110996905 110996938 -44633182 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 7 1431 330 192 0 71 chr4 110996938 110997022 -44633098 - RMER15 LTR ERVL -106 469 392 7 1431 521 299 96 0 chr4 110997144 110997341 -44632779 - Lx8 LINE L1 -433 7040 6825 7 1431 1320 33 0 0 chr4 110997328 110997479 -44632641 + L1Md_F2 LINE L1 5435 5585 -298 7 1431 8720 44 1 6 chr4 110997480 110998481 -44631639 + L1Md_F2 LINE L1 5587 6582 0 7 1431 2303 260 57 25 chr4 110998504 110999096 -44631024 - Lx8 LINE L1 -672 6801 6191 7 1431 525 44 0 0 chr4 110999232 110999300 -44630820 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 7 1431 216 0 0 0 chr4 111000166 111000190 -44629930 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 1 1431 227 226 19 19 chr4 111001124 111001178 -44628942 - L2b LINE L2 -42 3333 3280 2 1431 1196 95 0 0 chr4 111003509 111003657 -44626463 + B1_Mus1 SINE Alu 1 148 0 3 1431 383 0 0 21 chr4 111004379 111004427 -44625693 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1431 299 362 73 79 chr4 111004648 111004825 -44625295 + MamRep38 DNA hAT 85 260 -35 5 1431 560 279 0 28 chr4 111005063 111005207 -44624913 - ID_B1 SINE B4 -1 223 84 6 1431 402 313 160 19 chr4 111006508 111006870 -44623250 - L1ME3B LINE L1 -368 5872 5460 7 1431 354 270 16 126 chr4 111007237 111007364 -44622756 + PB1D10 SINE Alu 1 113 -4 8 1431 485 208 170 0 chr4 111007392 111007498 -44622622 + B1_Mur1 SINE Alu 21 144 -5 9 1431 306 0 0 0 chr4 111007499 111007533 -44622587 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1431 2918 73 141 141 chr4 111007740 111008252 -44621868 - RLTR1B LTR ERV1 0 512 1 1 1431 337 329 0 13 chr4 111008474 111008551 -44621569 + RSINE1 SINE B4 3 78 -87 1 1431 1625 208 92 31 chr4 111008554 111008945 -44621175 + MTC LTR MaLR 2 416 -5 1 1431 303 303 0 0 chr4 111008963 111009039 -44621081 + RSINE1 SINE B4 86 161 -4 1 1431 362 211 100 50 chr4 111009266 111009366 -44620754 - ID_B1 SINE B4 -2 222 118 1 1431 375 270 122 24 chr4 111009812 111010135 -44619985 - L1ME3B LINE L1 -4578 1588 1182 7 1431 1199 124 0 89 chr4 111010176 111010389 -44619731 + Lx2 LINE L1 6795 6988 -9 1 1431 1012 245 143 18 chr4 111010459 111010788 -44619332 + ORR1D2 LTR MaLR 1 370 0 1 1431 204 40 0 0 chr4 111012097 111012122 -44617998 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1 1431 245 339 0 0 chr4 111012122 111012181 -44617939 - tRNA-Ala-GCY_ tRNA tRNA -7 68 10 1 1431 227 380 0 0 chr4 111012123 111012194 -44617926 - ID4_ SINE ID -11 72 2 1 1431 308 287 44 53 chr4 111012203 111012317 -44617803 - B1F SINE Alu 0 149 37 2 1431 1668 291 46 58 chr4 111013068 111014022 -44616098 - L1MB7 LINE L1 -104 6080 5133 2 1431 201 196 0 0 chr4 111014022 111014068 -44616052 + CT-rich Low_complexity Low_complexity 2 47 0 2 1431 576 256 154 10 chr4 111014089 111014290 -44615830 - B4A SINE B4 -59 233 4 2 1431 295 247 135 13 chr4 111015125 111015281 -44614839 - L1ME4a LINE L1 -3 6121 5947 2 1431 669 278 99 73 chr4 111015631 111015934 -44614186 + Lx8 LINE L1 7139 7449 -24 2 1431 422 253 0 59 chr4 111016223 111016323 -44613797 + ID_B1 SINE B4 83 176 -48 2 1431 315 131 0 90 chr4 111016323 111016390 -44613730 + MTD LTR MaLR 1 61 -358 2 1431 268 26 0 0 chr4 111016406 111016445 -44613675 - L1_Mus2 LINE L1 -1 6565 6527 2 1431 1468 232 62 12 chr4 111016446 111016786 -44613334 + MTD LTR MaLR 58 414 -5 2 1431 454 290 64 23 chr4 111017226 111017399 -44612721 - MLT1K LTR MaLR -37 558 379 2 1431 521 203 33 25 chr4 111017743 111017864 -44612256 - ORR1D2 LTR MaLR -14 405 284 3 178 4774 84 8 3 chr4 111017885 111018494 -44611626 - L1_Mus3 LINE L1 -10 6628 6017 3 1432 756 52 0 0 chr4 111018494 111018591 -44611529 + L1_Mus3 LINE L1 5919 6015 -623 3 1432 1680 310 69 50 chr4 111018697 111019504 -44610616 - Lx8 LINE L1 -5 7468 6646 3 1432 1133 221 0 66 chr4 111019529 111019771 -44610349 - ORR1D2 LTR MaLR -144 226 1 3 1432 224 269 0 19 chr4 111020200 111020253 -44609867 + (TGG)n Simple_repeat Simple_repeat 2 53 0 3 1432 243 0 0 0 chr4 111020257 111020284 -44609836 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1432 252 0 0 0 chr4 111020284 111020311 -44609809 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1432 879 229 126 148 chr4 111020562 111020812 -44609308 + RLTR22_Mur LTR ERVK 1204 1445 -403 3 1432 408 118 0 0 chr4 111020812 111020880 -44609240 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1432 879 235 152 131 chr4 111020880 111021119 -44609001 + RLTR22_Mur LTR ERVK 1446 1638 -210 3 1432 542 201 101 89 chr4 111021204 111021362 -44608758 + RMER12 LTR ERVK 1163 1322 0 3 1432 30 0 0 0 chr4 111022321 111022351 -44607769 + AT_rich Low_complexity Low_complexity 1 30 0 3 1432 183 100 0 0 chr4 111023753 111023783 -44606337 + (CAATT)n Simple_repeat Simple_repeat 4 33 0 4 1432 365 203 0 0 chr4 111023914 111023983 -44606137 - RMER30 DNA MER1_type -1 201 133 4 1432 651 251 71 35 chr4 111024784 111024953 -44605167 - MTE-int LTR MaLR -650 930 756 4 1432 183 42 0 0 chr4 111025009 111025033 -44605087 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1432 1465 73 17 0 chr4 111025033 111025210 -44604910 - B2_Mm2 SINE B2 -15 180 1 4 1432 522 279 60 38 chr4 111025332 111025515 -44604605 - MTE-int LTR MaLR -1081 499 313 4 1432 35 24 0 0 chr4 111025865 111025907 -44604213 + AT_rich Low_complexity Low_complexity 1 42 0 4 1432 7033 145 77 10 chr4 111025910 111027191 -44602929 - Lx4B LINE L1 -11 7047 5681 4 1432 567 292 23 8 chr4 111027210 111027341 -44602779 + B1F1 SINE Alu 4 136 -13 4 1432 3313 76 2 2 chr4 111027342 111027750 -44602370 + L1_Mus2 LINE L1 6159 6566 0 4 1432 341 216 214 43 chr4 111027838 111027978 -44602142 - MER58B DNA MER1_type -150 191 28 4 1432 256 342 40 80 chr4 111028119 111028319 -44601801 + MT2B LTR ERVL 78 269 -332 5 1432 475 264 81 16 chr4 111028222 111028345 -44601775 + B1F1 SINE Alu 10 140 -9 5 1432 991 325 81 6 chr4 111028476 111028993 -44601127 - L1MB2 LINE L1 -36 6135 5580 5 1432 948 276 119 61 chr4 111030288 111030993 -44599127 - L1MD2 LINE L1 -43 6121 5355 5 1432 954 217 60 10 chr4 111031596 111031796 -44598324 - B3 SINE B2 -6 210 1 5 1432 4238 207 83 14 chr4 111031984 111032969 -44597151 - Lx9 LINE L1 -3 7641 6589 5 1432 206 266 61 37 chr4 111032981 111033063 -44597057 - L2 LINE L2 -540 2879 2796 5 1432 1173 204 78 27 chr4 111033169 111033328 -44596792 - Lx9 LINE L1 -1068 6576 6415 5 1432 237 119 0 0 chr4 111033328 111033370 -44596750 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 5 1432 1173 204 78 27 chr4 111033370 111033467 -44596653 - Lx9 LINE L1 -1230 6414 6307 5 1432 1788 238 58 77 chr4 111033479 111034268 -44595852 + RMER12 LTR ERVK 1 747 -1101 5 1432 754 223 46 107 chr4 111034361 111034577 -44595543 + RMER12 LTR ERVK 958 1160 -162 5 1432 190 273 0 98 chr4 111034862 111034923 -44595197 + MIR SINE MIR 99 153 -55 6 1432 207 69 0 0 chr4 111034988 111035017 -44595103 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 6 1432 755 296 75 28 chr4 111035033 111035315 -44594805 - Lx8 LINE L1 -6 7467 7173 6 1432 507 346 91 7 chr4 111035365 111035650 -44594470 + L2c LINE L2 2721 3029 -390 6 1432 193 306 20 0 chr4 111035697 111035746 -44594374 + L2c LINE L2 3130 3179 -247 6 1432 2183 194 36 38 chr4 111035777 111036374 -44593746 - Lx4B LINE L1 0 7050 6478 6 1432 208 348 21 42 chr4 111036571 111036667 -44593453 + L2c LINE L2 3293 3386 -1 6 1432 210 204 82 0 chr4 111036740 111036789 -44593331 + MIRc SINE MIR 167 219 -49 6 1432 235 335 62 85 chr4 111037695 111037871 -44592249 + MamRep1879 DNA hAT? 2 173 -43 6 1432 251 387 31 24 chr4 111038090 111038217 -44591903 + L2b LINE L2 3220 3347 -28 6 1432 537 315 38 88 chr4 111038712 111038973 -44591147 - MLT1A LTR MaLR -3 371 124 6 1432 1358 262 56 33 chr4 111039028 111039504 -44590616 - MLT1A-int LTR MaLR -4 1731 874 6 1432 311 290 74 33 chr4 111040312 111040508 -44589612 + MIRb SINE MIR 20 229 -39 6 1432 214 412 0 0 chr4 111040942 111041027 -44589093 - L2b LINE L2 -193 3182 3098 7 1432 212 247 101 110 chr4 111041479 111041588 -44588532 + L2a LINE L2 3319 3426 0 7 1432 231 36 0 0 chr4 111041588 111041616 -44588504 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1432 236 376 25 64 chr4 111041987 111042022 -44588098 + MIRb SINE MIR 66 99 -169 7 1432 4872 146 99 34 chr4 111042022 111042869 -44587251 + RMER19B LTR ERVK 1 902 0 7 1432 236 376 25 64 chr4 111042869 111043035 -44587085 + MIRb SINE MIR 100 259 -9 7 1432 460 213 108 156 chr4 111043838 111044005 -44586115 + RSINE1 SINE B4 5 163 -2 7 1432 283 333 50 0 chr4 111044078 111044177 -44585943 + MIR SINE MIR 27 130 -132 7 1432 691 313 127 19 chr4 111044763 111045085 -44585035 - LTR33A_ LTR ERVL 0 531 175 7 1432 894 172 166 5 chr4 111045249 111045442 -44584678 - URR1B DNA MER1_type -1 224 1 7 1432 952 159 7 0 chr4 111045870 111046015 -44584105 + B3 SINE B2 3 148 -68 7 1432 221 300 20 0 chr4 111046036 111046086 -44584034 + PB1D9 SINE Alu 3 53 -67 8 1432 373 285 31 25 chr4 111048130 111048292 -44581828 - MIRb SINE MIR -35 233 71 8 1432 211 336 38 9 chr4 111048757 111048862 -44581258 + L2b LINE L2 2856 2963 -456 8 1432 253 305 151 9 chr4 111049053 111049159 -44580961 + L2b LINE L2 3194 3314 -61 8 1432 279 0 0 0 chr4 111049332 111049363 -44580757 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1432 429 20 0 0 chr4 111049363 111049412 -44580708 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1432 183 280 61 102 chr4 111049624 111049771 -44580349 - L2b LINE L2 -277 3098 2958 8 1432 423 0 0 0 chr4 111050365 111050412 -44579708 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1432 494 161 10 45 chr4 111050413 111050707 -44579413 + (TG)n Simple_repeat Simple_repeat 1 283 0 8 1432 1479 263 38 88 chr4 111050777 111051038 -44579082 - MLT2B4 LTR ERVL -71 485 225 8 1432 662 221 35 28 chr4 111051038 111051182 -44578938 - B1_Mur1 SINE Alu 0 149 5 8 1432 1479 263 38 88 chr4 111051182 111051420 -44578700 - MLT2B4 LTR ERVL -332 224 11 8 1432 2359 176 44 12 chr4 111051925 111052333 -44577787 - MTC LTR MaLR 0 421 1 9 1432 258 336 127 26 chr4 111052738 111052967 -44577153 + L2c LINE L2 2946 3197 -190 9 1432 233 287 125 11 chr4 111053235 111053323 -44576797 + ID_B1 SINE B4 6 103 -121 9 1432 410 179 19 16 chr4 111054007 111054120 -44576000 - L1MA4 LINE L1 -302 5887 5774 9 1432 270 227 15 0 chr4 111054087 111054153 -44575967 + L1MA4 LINE L1 5860 5926 -374 9 1432 318 50 0 0 chr4 111054173 111054213 -44575907 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1432 1250 55 0 0 chr4 111054729 111054875 -44575245 + B1_Mm SINE Alu 1 146 -1 9 1432 252 0 0 0 chr4 111054877 111054905 -44575215 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1432 186 294 141 0 chr4 111055122 111055207 -44574913 - MIRm SINE MIR -137 139 43 9 1432 182 37 37 0 chr4 111056298 111056325 -44573795 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1432 306 0 0 0 chr4 111056324 111056358 -44573762 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1432 1172 81 0 0 chr4 111056358 111056506 -44573614 - B1_Mus1 SINE Alu 0 148 1 1 1432 222 269 0 15 chr4 111056509 111056577 -44573543 + CT-rich Low_complexity Low_complexity 1 67 0 1 1432 23 33 0 0 chr4 111057023 111057053 -44573067 + AT_rich Low_complexity Low_complexity 1 30 0 1 1432 197 298 198 19 chr4 111057093 111057199 -44572921 - MIRc SINE MIR -125 143 19 1 1432 1888 43 0 9 chr4 111057390 111057623 -44572497 + L1Md_F3 LINE L1 6340 6570 -14 1 1432 24 32 0 0 chr4 111057623 111057654 -44572466 + AT_rich Low_complexity Low_complexity 1 31 0 1 1432 282 373 78 23 chr4 111057956 111058173 -44571947 + L2b LINE L2 3147 3375 0 1 1432 334 239 14 0 chr4 111059284 111059355 -44570765 + ID4 SINE ID 2 73 -10 1 1432 843 151 49 54 chr4 111059435 111059638 -44570482 - RMER4A LTR ERVK 0 466 265 1 1432 25 0 0 0 chr4 111059711 111059736 -44570384 + AT_rich Low_complexity Low_complexity 1 25 0 1 1432 1534 136 33 7 chr4 111059862 111060137 -44569983 - RMER4A LTR ERVK -184 282 1 1 1432 367 329 40 33 chr4 111060755 111060906 -44569214 - MIRb SINE MIR -116 152 1 1 1432 319 366 10 46 chr4 111061542 111061737 -44568383 - LTR88b LTR Gypsy? -11 826 639 1 1432 991 133 193 21 chr4 111062264 111062456 -44567664 - URR1B DNA MER1_type 0 225 1 1 1432 251 313 64 24 chr4 111063042 111063236 -44566884 - MIRb SINE MIR -19 249 46 1 1432 29 0 0 0 chr4 111063863 111063892 -44566228 + AT_rich Low_complexity Low_complexity 1 29 0 1 1432 280 359 0 0 chr4 111063985 111064102 -44566018 - PB1D10 SINE Alu 0 117 1 1 1432 525 80 0 0 chr4 111064187 111064262 -44565858 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1432 199 286 0 31 chr4 111064263 111064328 -44565792 + L3 LINE CR1 4302 4364 -125 1 1432 279 0 0 0 chr4 111064520 111064551 -44565569 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1432 796 169 56 0 chr4 111066701 111066843 -44563277 - B1_Mur4 SINE Alu 0 150 1 1 1432 330 87 0 0 chr4 111067078 111067124 -44562996 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1432 4955 92 0 9 chr4 111067193 111067885 -44562235 + L1_Mus4 LINE L1 5951 6636 0 1 1432 360 0 0 0 chr4 111069460 111069500 -44560620 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1432 233 377 8 8 chr4 111070061 111070184 -44559936 - L2b LINE L2 0 3375 3253 1 1432 642 217 72 0 chr4 111070251 111070389 -44559731 - B1_Mur2 SINE Alu 0 149 2 1 1432 639 301 32 41 chr4 111070580 111070826 -44559294 + L1MD2 LINE L1 6048 6291 -68 1 1432 826 315 5 0 chr4 111070844 111071057 -44559063 + ID_B1 SINE B4 11 224 0 1 1432 447 234 27 9 chr4 111071545 111071657 -44558463 + PB1D7 SINE Alu 5 118 -2 1 1432 586 227 18 0 chr4 111071940 111072050 -44558070 + PB1D7 SINE Alu 3 114 -6 1 1432 213 39 0 0 chr4 111072777 111072803 -44557317 + (CACCC)n Simple_repeat Simple_repeat 3 28 0 1 1432 242 320 49 12 chr4 111073888 111074023 -44556097 + L2b LINE L2 3038 3166 -221 1 1432 355 321 181 33 chr4 111074218 111074581 -44555539 - MLT1C LTR MaLR -36 431 15 1 1432 180 283 49 16 chr4 111074651 111074712 -44555408 + L2b LINE L2 3362 3424 -2 1 1432 823 268 60 22 chr4 111076615 111076882 -44553238 + B4A SINE B4 5 281 -11 1 1432 262 232 18 0 chr4 111076894 111076950 -44553170 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1 1432 1384 255 38 30 chr4 111078381 111078753 -44551367 - MTE2b LTR MaLR -4 375 1 1 1432 287 267 36 90 chr4 111078774 111078885 -44551235 + PB1D9 SINE Alu 1 105 -15 1 1432 585 0 0 0 chr4 111078888 111078953 -44551167 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1432 377 214 9 64 chr4 111080134 111080244 -44549876 + B1F SINE Alu 46 149 0 1 1432 314 45 23 0 chr4 111080246 111080290 -44549830 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1432 225 0 0 0 chr4 111080290 111080314 -44549806 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1432 280 307 107 0 chr4 111081253 111081393 -44548727 - L2a LINE L2 -5 3421 3267 1 1432 430 284 88 0 chr4 111081763 111081911 -44548209 + MIR SINE MIR 89 249 -13 1 1432 205 205 0 0 chr4 111081913 111081952 -44548168 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1 1432 243 270 88 26 chr4 111082667 111082781 -44547339 + MER5B DNA MER1_type 27 147 -31 1 1432 948 287 77 27 chr4 111082860 111083197 -44546923 + L1MC1 LINE L1 5951 6304 -29 1 1432 24 53 0 0 chr4 111087657 111087695 -44542425 + GC_rich Low_complexity Low_complexity 1 38 0 1 1432 28 0 0 0 chr4 111087748 111087776 -44542344 + GC_rich Low_complexity Low_complexity 1 28 0 1 1432 183 129 0 0 chr4 111089831 111089862 -44540258 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1432 505 155 48 0 chr4 111089968 111090052 -44540068 - B1_Mus2 SINE Alu 0 147 60 1 1432 219 114 0 0 chr4 111090764 111090799 -44539321 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 1432 188 330 110 0 chr4 111090907 111091007 -44539113 - MIRc SINE MIR -112 156 46 1 1432 267 31 0 0 chr4 111092536 111092568 -44537552 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1 1432 201 74 0 0 chr4 111092962 111092989 -44537131 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1432 22 56 0 0 chr4 111093323 111093359 -44536761 + AT_rich Low_complexity Low_complexity 1 36 0 1 1432 210 91 0 0 chr4 111093923 111093956 -44536164 + (C)n Simple_repeat Simple_repeat 1 33 0 1 1432 195 315 136 46 chr4 111094092 111094438 -44535682 - L2 LINE L2 -934 2485 2109 1 1432 243 0 0 0 chr4 111096004 111096031 -44534089 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1432 211 317 39 10 chr4 111097293 111097395 -44532725 - MIRb SINE MIR -139 129 25 1 1432 23 0 0 0 chr4 111097395 111097418 -44532702 + AT_rich Low_complexity Low_complexity 1 23 0 1 1432 27 29 0 0 chr4 111098432 111098466 -44531654 + AT_rich Low_complexity Low_complexity 1 34 0 1 1432 1267 103 0 30 chr4 111098466 111098666 -44531454 - B2_Mm2 SINE B2 -1 194 1 1 1432 484 285 151 0 chr4 111098728 111098907 -44531213 - B3 SINE B2 0 216 11 1 1432 810 88 0 0 chr4 111098904 111099017 -44531103 - B1_Mm SINE Alu 0 147 35 1 1432 1169 295 94 38 chr4 111099077 111099680 -44530440 - L1MB7 LINE L1 -176 6008 5372 1 1432 432 0 0 0 chr4 111099686 111099734 -44530386 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1 1432 502 176 0 0 chr4 111100448 111100533 -44529587 - 5S rRNA rRNA -31 90 6 1 1432 330 104 0 0 chr4 111101323 111101371 -44528749 - HAL1-3A_ME LINE L1 -833 2025 1978 1 1432 336 24 0 0 chr4 111101371 111101412 -44528708 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1432 24 0 0 0 chr4 111101843 111101867 -44528253 + AT_rich Low_complexity Low_complexity 1 24 0 1 1432 477 0 0 0 chr4 111102284 111102337 -44527783 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1432 242 255 0 0 chr4 111103052 111103103 -44527017 - ORR1D1 LTR MaLR 0 374 324 1 1432 798 188 81 0 chr4 111103105 111103302 -44526818 - ORR1D1 LTR MaLR -161 213 1 1 1432 180 353 67 8 chr4 111104497 111104617 -44525503 - L2b LINE L2 -31 3344 3218 1 1432 375 246 86 14 chr4 111105548 111105688 -44524432 + MIR3 SINE MIR 59 208 0 1 1432 226 215 14 84 chr4 111106813 111106884 -44523236 + ID4_ SINE ID 2 67 -16 1 1432 204 103 50 25 chr4 111107836 111107876 -44522244 + G-rich Low_complexity Low_complexity 5 45 0 1 1432 366 252 13 13 chr4 111108598 111108751 -44521369 + (CATA)n Simple_repeat Simple_repeat 4 156 0 1 1432 194 315 98 36 chr4 111110504 111110616 -44519504 - L2a LINE L2 -9 3417 3299 1 1432 1044 110 0 0 chr4 111110802 111111134 -44518986 + (TG)n Simple_repeat Simple_repeat 1 332 0 1 1432 1080 128 0 1 chr4 111111168 111112370 -44517750 + (TG)n Simple_repeat Simple_repeat 1 1201 0 1 1432 396 234 0 13 chr4 111112370 111112448 -44517672 - RSINE1 SINE B4 -86 79 3 1 1432 187 303 26 26 chr4 111112535 111112613 -44517507 - L2c LINE L2 -52 3335 3258 1 1432 419 278 30 15 chr4 111112749 111112884 -44517236 - MIRc SINE MIR 0 268 132 1 1432 272 355 86 51 chr4 111113345 111113520 -44516600 + MIRb SINE MIR 31 211 -57 1 1432 236 330 65 11 chr4 111114620 111114712 -44515408 - MIRb SINE MIR -129 139 43 1 1432 199 166 49 49 chr4 111116471 111116516 -44513604 - MIRc SINE MIR -118 158 111 1 1432 211 255 59 0 chr4 111117407 111117458 -44512662 - MIR SINE MIR -67 141 88 1 1432 183 146 0 0 chr4 111117913 111117954 -44512166 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 1 1432 279 333 0 0 chr4 111117960 111118062 -44512058 + (TATG)n Simple_repeat Simple_repeat 2 103 0 1 1432 206 213 0 0 chr4 111118043 111118090 -44512030 + CT-rich Low_complexity Low_complexity 2 48 0 1 1432 216 294 84 95 chr4 111118247 111118477 -44511643 - L2b LINE L2 -66 3309 3072 1 1432 245 276 52 13 chr4 111118859 111118936 -44511184 - L2a LINE L2 -6 3420 3341 1 1432 426 231 100 18 chr4 111119270 111119380 -44510740 - ID_B1 SINE B4 -3 221 103 1 1432 24 67 0 0 chr4 111121490 111121535 -44508585 + AT_rich Low_complexity Low_complexity 1 45 0 1 1432 329 315 34 34 chr4 111122253 111122401 -44507719 + MIR3 SINE MIR 30 177 -31 1 1432 261 296 141 5 chr4 111123904 111124069 -44506051 - MIRc SINE MIR -76 192 6 1 1432 196 376 58 33 chr4 111124551 111124672 -44505448 + MIRc SINE MIR 48 171 -97 1 1432 218 333 0 0 chr4 111124782 111124839 -44505281 + PB1D7 SINE Alu 1 57 -63 1 1432 192 27 81 0 chr4 111125337 111125374 -44504746 + (GCCTG)n Simple_repeat Simple_repeat 4 43 0 1 1432 437 285 65 26 chr4 111126108 111126263 -44503857 + MER5B DNA MER1_type 1 161 -17 1 1432 196 347 40 13 chr4 111126973 111127049 -44503071 - L2b LINE L2 -4 3371 3294 1 1432 217 192 13 40 chr4 111127464 111127540 -44502580 + CT-rich Low_complexity Low_complexity 2 75 0 1 1432 202 320 110 0 chr4 111127785 111127885 -44502235 - MIR SINE MIR -43 219 109 1 1432 338 211 14 0 chr4 111129087 111129158 -44500962 - PB1D7 SINE Alu -1 119 48 1 1432 374 313 29 70 chr4 111129720 111129914 -44500206 + L2b LINE L2 3014 3207 -180 2 1432 558 0 0 0 chr4 111131716 111131778 -44498342 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1432 348 319 77 14 chr4 111132019 111132050 -44498070 - B4A SINE B4 -58 234 114 2 1432 615 189 9 0 chr4 111132050 111132156 -44497964 - B1_Mur1 SINE Alu -39 110 4 2 1432 378 280 199 0 chr4 111133448 111133634 -44496486 + MIRc SINE MIR 7 229 -39 2 1432 233 216 58 19 chr4 111134111 111134163 -44495957 + PB1D7 SINE Alu 1 54 -66 2 1432 968 204 0 6 chr4 111134164 111134341 -44495779 - MTD LTR MaLR -231 188 13 2 1432 238 180 0 32 chr4 111134343 111134388 -44495732 + polypurine Low_complexity Low_complexity 3 46 0 2 1432 1315 55 0 16 chr4 111134388 111134571 -44495549 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1432 238 180 0 32 chr4 111134571 111134588 -44495532 + polypurine Low_complexity Low_complexity 47 63 0 2 1432 345 24 0 0 chr4 111134598 111134640 -44495480 + (CAG)n Simple_repeat Simple_repeat 2 43 0 2 1432 349 190 0 0 chr4 111134646 111134704 -44495416 + ID_B1 SINE B4 167 224 0 2 1432 521 315 36 82 chr4 111135097 111135377 -44494743 + ORR1E LTR MaLR 41 307 -52 2 1432 1618 251 41 13 chr4 111135388 111135779 -44494341 + MTD LTR MaLR 18 419 0 2 1432 543 16 0 0 chr4 111135819 111135883 -44494237 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1432 465 19 0 0 chr4 111135883 111135936 -44494184 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1432 285 102 33 17 chr4 111136933 111136993 -44493127 + CT-rich Low_complexity Low_complexity 1 61 0 2 1432 519 159 40 108 chr4 111137006 111137154 -44492966 - B1_Mus1 SINE Alu -9 139 2 2 1432 27 62 0 0 chr4 111137398 111137446 -44492674 + AT_rich Low_complexity Low_complexity 1 48 0 2 1432 239 317 92 53 chr4 111137732 111137891 -44492229 + MIRb SINE MIR 14 180 -88 2 1432 428 0 19 0 chr4 111138049 111138101 -44492019 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 1432 968 200 94 79 chr4 111139099 111139313 -44490807 - MTD LTR MaLR -12 407 208 2 1432 401 282 26 45 chr4 111139993 111140149 -44489971 - L3 LINE CR1 -671 3818 3666 2 1432 308 267 49 49 chr4 111140397 111140539 -44489581 - L1M5 LINE L1 -381 5743 5602 2 1432 399 21 0 0 chr4 111140881 111140929 -44489191 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1432 270 289 87 0 chr4 111141923 111142027 -44488093 + MIR SINE MIR 28 140 -122 2 1432 2336 171 42 15 chr4 111142842 111143252 -44486868 + MTC LTR MaLR 1 421 0 2 1432 486 0 0 0 chr4 111143340 111143394 -44486726 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1432 1239 47 0 7 chr4 111143396 111143545 -44486575 - B1_Mus1 SINE Alu 0 148 1 2 1432 774 60 0 0 chr4 111143604 111143704 -44486416 + (TTCCC)n Simple_repeat Simple_repeat 3 102 0 2 1432 346 300 56 62 chr4 111143866 111144026 -44486094 - MIRc SINE MIR -108 160 2 2 1432 450 53 0 0 chr4 111145991 111146048 -44484072 + (TGAA)n Simple_repeat Simple_repeat 3 59 0 2 1432 210 37 0 0 chr4 111146342 111146369 -44483751 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1432 362 257 166 20 chr4 111147814 111147839 -44482281 - B4 SINE B4 -38 254 139 2 1432 676 158 0 17 chr4 111147839 111147955 -44482165 - PB1D9 SINE Alu 0 120 7 2 1432 278 292 30 98 chr4 111147874 111148007 -44482113 - MT2B LTR ERVL -358 243 120 2 1432 209 305 0 0 chr4 111148352 111148411 -44481709 + L2 LINE L2 2977 3035 -384 2 1433 302 341 74 33 chr4 111150669 111150884 -44479236 + MIR SINE MIR 37 260 -2 2 1433 307 258 162 76 chr4 111151387 111151704 -44478416 + MLT1A1 LTR MaLR 54 408 0 2 1433 262 335 38 70 chr4 111153646 111153832 -44476288 - L2a LINE L2 -2 3424 3245 2 1433 282 346 75 38 chr4 111153839 111153998 -44476122 + Tigger5 DNA MER2_type 29 193 -2213 2 1433 742 262 49 9 chr4 111154031 111154254 -44475866 + Tigger5 DNA MER2_type 2174 2405 -1 2 1433 551 283 23 51 chr4 111154239 111154414 -44475706 + MTEa LTR MaLR 1 170 -209 2 1433 672 333 132 32 chr4 111154549 111155213 -44474907 - L2a LINE L2 -449 2970 2240 2 1433 186 274 19 87 chr4 111155228 111155279 -44474841 + MIRm SINE MIR 87 134 -142 2 1433 1376 143 9 43 chr4 111155279 111155512 -44474608 - URR1B DNA MER1_type 0 225 1 2 1433 186 274 19 87 chr4 111155512 111155564 -44474556 + MIRm SINE MIR 135 183 -93 2 1433 699 279 163 10 chr4 111155748 111156048 -44474072 - MLT1A0 LTR MaLR -12 353 8 2 1433 220 290 43 14 chr4 111156182 111156252 -44473868 - MIRm SINE MIR -129 147 76 2 1433 408 71 0 0 chr4 111156559 111156615 -44473505 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1433 684 83 0 0 chr4 111156615 111156724 -44473396 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1433 495 326 60 112 chr4 111156749 111156998 -44473122 + B4A SINE B4 2 237 -55 2 1433 309 26 0 0 chr4 111157085 111157123 -44472997 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1433 456 378 41 9 chr4 111157315 111157534 -44472586 + MIRb SINE MIR 17 242 -26 2 1433 454 228 183 9 chr4 111159145 111159260 -44470860 + B1_Mur1 SINE Alu 2 136 -13 2 1433 197 219 24 0 chr4 111159279 111159320 -44470800 - L2c LINE L2 -234 3153 3112 2 1433 244 367 61 30 chr4 111159540 111159672 -44470448 + MIRb SINE MIR 118 253 -15 2 1433 258 81 0 0 chr4 111160116 111160153 -44469967 + (CCCCCT)n Simple_repeat Simple_repeat 2 38 0 2 1433 315 234 0 0 chr4 111160155 111160232 -44469888 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1433 416 194 0 19 chr4 111160876 111160981 -44469139 + (TATATG)n Simple_repeat Simple_repeat 5 107 0 2 1433 236 325 57 16 chr4 111161314 111161436 -44468684 + ORR1E LTR MaLR 1 127 -232 2 1433 578 328 84 38 chr4 111161695 111162145 -44467975 - L1MC LINE L1 -2921 3225 2755 2 1433 652 206 78 16 chr4 111162434 111162562 -44467558 - B1_Mur1 SINE Alu -13 136 1 2 1433 225 311 130 92 chr4 111162628 111162890 -44467230 - B4 SINE B4 -18 274 3 2 1433 848 199 7 0 chr4 111164074 111164215 -44465905 + B1_Mur2 SINE Alu 2 143 -6 2 1433 521 282 84 40 chr4 111164361 111164647 -44465473 - B4 SINE B4 -16 276 12 2 1433 278 26 26 0 chr4 111166089 111166128 -44463992 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 2 1433 201 348 108 19 chr4 111166303 111166461 -44463659 - MIRc SINE MIR -33 235 64 2 1433 314 323 50 45 chr4 111166710 111166908 -44463212 - MIRb SINE MIR -36 232 34 2 1433 357 320 50 25 chr4 111167145 111167305 -44462815 + MIRb SINE MIR 34 197 -71 2 1433 288 0 0 0 chr4 111167578 111167610 -44462510 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1433 224 288 17 0 chr4 111168569 111168628 -44461492 + MIRb SINE MIR 123 182 -86 2 1433 364 273 63 146 chr4 111170589 111170795 -44459325 + MTEa LTR MaLR 191 379 0 2 1433 696 111 16 8 chr4 111171908 111172035 -44458085 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1433 1955 284 142 47 chr4 111172180 111173145 -44456975 - Lx8 LINE L1 -187 7286 6230 2 1433 436 239 21 0 chr4 111173261 111173371 -44456749 + L1_Mur3 LINE L1 3843 3980 -2166 2 1433 355 250 135 0 chr4 111174681 111174785 -44455335 + MIRb SINE MIR 83 200 -68 2 1433 240 220 34 0 chr4 111175186 111175245 -44454875 - MIR SINE MIR -87 121 61 2 1433 213 190 12 37 chr4 111175520 111175602 -44454518 + CT-rich Low_complexity Low_complexity 2 81 0 2 1433 1473 157 92 0 chr4 111177032 111177325 -44452795 - IAPEY3_LTR LTR ERVK -12 320 1 2 1433 310 190 210 0 chr4 111178429 111178529 -44451591 - MLT1B LTR MaLR -200 190 70 2 1433 1810 209 39 21 chr4 111178940 111179153 -44450967 - MTD LTR MaLR -23 396 175 2 1433 1783 165 81 31 chr4 111179153 111179573 -44450547 - RMER10A LTR ERVL -1 441 1 2 1433 1810 209 39 21 chr4 111179573 111179745 -44450375 - MTD LTR MaLR -245 174 4 2 1433 207 209 47 0 chr4 111180512 111180555 -44449565 - MER5A DNA MER1_type -78 111 67 2 1433 186 316 18 0 chr4 111182045 111182102 -44448018 - MIRb SINE MIR -176 92 35 2 1433 468 0 0 0 chr4 111182223 111182275 -44447845 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 2 1433 192 40 0 0 chr4 111183043 111183068 -44447052 + (C)n Simple_repeat Simple_repeat 1 25 0 2 1433 183 346 58 0 chr4 111183747 111183851 -44446269 + MIRb SINE MIR 4 113 -155 2 1433 2638 270 97 19 chr4 111184714 111185129 -44444991 + Lx9 LINE L1 6502 6934 -710 2 1433 3383 37 0 0 chr4 111185129 111185531 -44444589 - L1Md_T LINE L1 0 6582 6181 2 1433 2638 270 97 19 chr4 111185531 111185920 -44444200 + Lx9 LINE L1 6935 7342 -302 2 1433 450 0 0 0 chr4 111185920 111185970 -44444150 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1433 2638 270 97 19 chr4 111185970 111186059 -44444061 + Lx9 LINE L1 7343 7465 -179 2 1433 226 193 148 0 chr4 111186082 111186170 -44443950 + Lx9 LINE L1 7544 7644 0 2 1433 290 366 67 0 chr4 111187185 111187319 -44442801 - MIR SINE MIR -2 260 118 2 1433 653 292 80 28 chr4 111188816 111189091 -44441029 + B4A SINE B4 2 292 0 2 1433 219 109 43 0 chr4 111189566 111189612 -44440508 + A-rich Low_complexity Low_complexity 2 49 0 2 1433 213 245 80 60 chr4 111190267 111190367 -44439753 - L2c LINE L2 -9 3417 3316 2 1433 189 372 38 38 chr4 111190667 111190773 -44439347 + L2b LINE L2 3247 3352 -23 2 1433 423 0 0 0 chr4 111190874 111190921 -44439199 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1433 317 294 128 58 chr4 111191162 111191350 -44438770 + MER20 DNA MER1_type 4 204 -15 2 1433 209 262 99 12 chr4 111191447 111191528 -44438592 - MIRb SINE MIR -94 174 87 2 1433 253 333 27 55 chr4 111191965 111192184 -44437936 - L2c LINE L2 -238 3149 2937 2 1433 439 281 93 133 chr4 111192302 111192595 -44437525 - MLT1F1 LTR MaLR -43 526 168 2 1433 4508 169 42 11 chr4 111192669 111193458 -44436662 - Lx5 LINE L1 0 7050 6238 2 1433 480 317 124 30 chr4 111193497 111193731 -44436389 - RMER13A LTR ERVK -41 819 564 2 1433 1349 219 52 60 chr4 111193832 111194216 -44435904 - RMER13A LTR ERVK -466 394 14 2 1433 344 295 105 16 chr4 111194361 111194485 -44435635 + ID_B1 SINE B4 84 218 -6 2 1433 228 342 0 112 chr4 111194657 111194782 -44435338 + MIRb SINE MIR 113 223 -45 3 1433 217 322 113 53 chr4 111194843 111194994 -44435126 + MIR SINE MIR 1 160 -102 3 1433 309 131 0 0 chr4 111195078 111195139 -44434981 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1433 272 96 0 37 chr4 111196579 111196633 -44433487 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 1433 746 206 20 14 chr4 111196634 111196782 -44433338 - B1_Mur3 SINE Alu 0 149 1 3 1433 635 250 105 11 chr4 111196827 111197017 -44433103 - B3 SINE B2 0 216 9 3 1433 328 287 0 9 chr4 111198172 111198272 -44431848 - ID4 SINE ID -45 107 11 3 1433 220 330 157 30 chr4 111198339 111198536 -44431584 + MIRb SINE MIR 47 268 0 3 1433 206 338 83 14 chr4 111198542 111198686 -44431434 - MIRb SINE MIR -1 267 114 3 1433 1651 22 0 0 chr4 111198823 111199007 -44431113 - B2_Mm1a SINE B2 -8 185 2 3 1433 530 299 121 16 chr4 111199947 111200311 -44429809 - L1ME3B LINE L1 -180 6060 5659 3 1433 332 223 0 9 chr4 111200456 111200542 -44429578 - ID4_ SINE ID -69 83 2 3 1433 391 234 26 18 chr4 111200554 111200667 -44429453 - B1F SINE Alu -4 145 32 3 1433 23 0 0 0 chr4 111200757 111200780 -44429340 + AT_rich Low_complexity Low_complexity 1 23 0 3 1433 257 332 154 18 chr4 111200919 111201146 -44428974 + MIRb SINE MIR 4 261 -7 3 1433 210 250 59 12 chr4 111201276 111201361 -44428759 - MIR SINE MIR -59 149 61 3 1433 242 290 128 18 chr4 111202233 111202342 -44427778 - MIRb SINE MIR -135 133 13 3 1433 321 353 40 11 chr4 111203161 111203336 -44426784 + MIR SINE MIR 54 233 -29 3 1433 317 355 22 0 chr4 111203766 111203904 -44426216 + MIRb SINE MIR 18 158 -110 3 1433 477 0 0 0 chr4 111204071 111204124 -44425996 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1433 351 0 0 0 chr4 111204204 111204243 -44425877 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1433 240 203 133 13 chr4 111205132 111205207 -44424913 - MamGypLTR1c LTR Gypsy -53 750 667 3 1433 359 167 0 11 chr4 111205535 111205626 -44424494 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 3 1433 263 136 17 0 chr4 111205614 111205673 -44424447 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1433 278 271 197 50 chr4 111205778 111205976 -44424144 - MIR SINE MIR -24 238 12 3 1433 8241 61 8 1 chr4 111206327 111208082 -44422038 - L1Md_F2 LINE L1 0 6582 4813 3 1433 2430 87 3 54 chr4 111208082 111208436 -44421684 - IAPLTR1a_Mm LTR ERVK -1 336 1 3 1433 15563 36 3 1 chr4 111208436 111210235 -44419885 - IAPEz-int LTR ERVK 0 6481 4678 3 1433 1912 86 4 0 chr4 111210253 111210498 -44419622 - IAPEz-int LTR ERVK -5183 2497 2252 3 1433 988 59 0 0 chr4 111210499 111210618 -44419502 - IAPEz-int LTR ERVK -5004 1477 1359 3 1433 5116 58 0 53 chr4 111210618 111211312 -44418808 - IAPEz-int LTR ERVK -5819 662 6 3 1433 2192 91 3 54 chr4 111211312 111211662 -44418458 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1433 27473 59 9 6 chr4 111211662 111211744 -44418376 - L1Md_F2 LINE L1 -1067 4816 4736 3 1433 4552 47 2 4 chr4 111211744 111212299 -44417821 - L1Md_F2 LINE L1 -12 6570 6017 3 1433 180 0 0 0 chr4 111212300 111212320 -44417800 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1433 27473 76 11 10 chr4 111212320 111216606 -44413514 - L1Md_F2 LINE L1 -1148 4735 446 3 1433 2649 189 67 30 chr4 111216724 111217334 -44412786 + RLTR26 LTR ERVK 10 642 0 3 1433 420 20 0 0 chr4 111217336 111217385 -44412735 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1433 572 289 25 13 chr4 111217391 111217549 -44412571 - B3A SINE B2 -38 160 1 3 1433 326 177 0 25 chr4 111218241 111218322 -44411798 + GA-rich Low_complexity Low_complexity 3 81 0 3 1433 331 224 0 0 chr4 111218362 111218429 -44411691 + B4 SINE B4 5 71 -221 3 1433 250 290 78 31 chr4 111220144 111220272 -44409848 + MIRb SINE MIR 64 197 -71 3 1433 218 316 0 38 chr4 111221102 111221181 -44408939 + L2b LINE L2 3300 3375 0 3 1433 252 373 15 0 chr4 111221993 111222127 -44407993 + MER103 DNA DNA 11 146 -20 3 1433 26 30 0 0 chr4 111222282 111222315 -44407805 + AT_rich Low_complexity Low_complexity 1 33 0 3 1433 197 221 15 0 chr4 111222864 111222932 -44407188 + CT-rich Low_complexity Low_complexity 4 72 0 3 1433 594 259 0 7 chr4 111223075 111223211 -44406909 + ID_B1 SINE B4 6 140 -84 3 1433 537 169 40 0 chr4 111223212 111223283 -44406837 + polypurine Low_complexity Low_complexity 1 71 0 3 1433 1058 81 29 11 chr4 111223283 111223458 -44406662 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 3 1433 537 169 40 0 chr4 111223458 111223534 -44406586 + polypurine Low_complexity Low_complexity 72 153 0 3 1433 603 0 0 0 chr4 111223534 111223601 -44406519 + (GAGAA)n Simple_repeat Simple_repeat 2 68 0 3 1433 959 250 82 37 chr4 111224790 111225118 -44405002 + L1MB3 LINE L1 5839 6181 -2 3 1433 591 222 114 0 chr4 111226362 111226508 -44403612 + B3 SINE B2 1 164 -34 3 1433 363 23 0 0 chr4 111226678 111226722 -44403398 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 3 1433 266 317 10 0 chr4 111226799 111226903 -44403217 + MamRep564 Unknown Unknown 131 235 -122 3 1433 311 131 70 28 chr4 111227041 111227112 -44403008 - L1_Mus3 LINE L1 0 6638 6565 3 1433 265 224 152 10 chr4 111227640 111227739 -44402381 - MIR SINE MIR -36 226 114 3 1433 380 231 37 0 chr4 111228769 111228903 -44401217 + CT-rich Low_complexity Low_complexity 2 140 0 3 1433 212 312 80 27 chr4 111229012 111229124 -44400996 - L2c LINE L2 -221 3166 3049 3 1433 273 260 110 0 chr4 111229543 111229616 -44400504 + ID4 SINE ID 2 82 -1 3 1433 219 286 48 0 chr4 111230381 111230465 -44399655 - MIRb SINE MIR -50 218 131 3 1433 275 284 12 12 chr4 111232395 111232477 -44397643 - MIRc SINE MIR -164 104 23 3 1433 2324 173 12 21 chr4 111232511 111232936 -44397184 - MTC LTR MaLR 0 421 1 3 1433 211 372 50 14 chr4 111233686 111233825 -44396295 + MIRb SINE MIR 40 183 -85 3 1433 430 283 31 50 chr4 111234720 111234880 -44395240 + RSINE1 SINE B4 5 161 -4 3 1433 396 55 0 0 chr4 111234885 111234940 -44395180 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1433 403 297 112 41 chr4 111235649 111235891 -44394229 - MIRb SINE MIR -9 259 1 3 1433 2025 154 33 18 chr4 111236391 111236765 -44393355 + Lx4B LINE L1 6656 7036 -22 3 1433 297 0 0 0 chr4 111236765 111236798 -44393322 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 3 1433 2025 154 33 18 chr4 111236798 111236820 -44393300 + Lx4B LINE L1 7037 7058 0 3 1433 304 273 0 39 chr4 111236860 111236963 -44393157 - MLT1A1 LTR MaLR 0 408 310 3 1433 257 157 0 0 chr4 111237032 111237083 -44393037 - MLT1A1 LTR MaLR -258 116 66 3 1433 194 276 53 0 chr4 111237233 111237309 -44392811 + MIR SINE MIR 148 227 -35 3 1433 438 323 105 28 chr4 111238402 111238840 -44391280 - L2a LINE L2 -259 3167 2694 3 1433 288 331 32 0 chr4 111238984 111239138 -44390982 + MIR SINE MIR 92 250 -12 3 1433 2440 63 85 0 chr4 111239740 111240059 -44390061 - ORR1A1 LTR MaLR 0 346 1 3 1433 207 328 89 42 chr4 111240474 111240665 -44389455 + L3 LINE CR1 4287 4486 -3 3 1433 401 311 75 8 chr4 111240974 111241107 -44389013 - RSINE1 SINE B4 -22 143 2 3 1433 1952 148 99 3 chr4 111241717 111242062 -44388058 - ORR1C1 LTR MaLR 0 378 1 3 1433 682 130 0 15 chr4 111243138 111243271 -44386849 + (TCCC)n Simple_repeat Simple_repeat 2 132 0 3 1433 346 300 9 48 chr4 111243279 111243384 -44386736 - PB1D10 SINE Alu -16 101 1 3 1433 214 151 113 0 chr4 111243779 111243832 -44386288 - L2 LINE L2 -570 2849 2791 3 1433 2725 16 5 145 chr4 111244353 111244780 -44385340 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1433 7477 91 89 72 chr4 111244780 111246064 -44384056 + IAPEz-int LTR ERVK 8 1313 -5168 3 1433 29417 21 1 1 chr4 111246063 111249334 -44380786 + IAPEz-int LTR ERVK 3210 6481 0 3 1433 2725 16 5 145 chr4 111249334 111249761 -44380359 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1433 2783 68 13 21 chr4 111251363 111251751 -44378369 - L1_Mus3 LINE L1 -1 6637 6253 3 1433 23 33 0 0 chr4 111251768 111251798 -44378322 + AT_rich Low_complexity Low_complexity 1 30 0 3 1433 235 231 125 52 chr4 111252096 111252192 -44377928 + L2b LINE L2 3272 3374 -1 3 1433 234 0 0 0 chr4 111252380 111252406 -44377714 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 3 1433 182 91 30 0 chr4 111252465 111252498 -44377622 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1433 261 0 0 0 chr4 111252773 111252802 -44377318 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 1433 195 42 0 0 chr4 111252966 111252990 -44377130 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1433 200 122 0 39 chr4 111253423 111253474 -44376646 + A-rich Low_complexity Low_complexity 4 52 0 3 1433 235 267 0 32 chr4 111254818 111254880 -44375240 + L2c LINE L2 3312 3371 -16 3 1433 461 288 25 82 chr4 111254983 111255142 -44374978 + B4A SINE B4 2 151 -141 3 1433 297 0 0 0 chr4 111255172 111255205 -44374915 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1433 225 128 0 0 chr4 111255206 111255253 -44374867 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 3 1433 482 156 49 8 chr4 111255251 111255374 -44374746 + G-rich Low_complexity Low_complexity 4 131 0 3 1433 684 225 152 33 chr4 111255431 111255615 -44374505 + B3 SINE B2 3 208 -8 3 1433 186 315 143 36 chr4 111257434 111257546 -44372574 + MIRc SINE MIR 14 141 -127 3 1433 1614 22 0 16 chr4 111257849 111258037 -44372083 + B2_Mm1t SINE B2 2 186 -7 3 1433 462 114 0 0 chr4 111258993 111259072 -44371048 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 3 1433 198 321 62 0 chr4 111259352 111259433 -44370687 + MIR SINE MIR 103 188 -74 3 1433 217 309 41 41 chr4 111259439 111259537 -44370583 + B1F1 SINE Alu 3 100 -49 3 1433 1416 220 81 3 chr4 111259528 111259875 -44370245 - MTEa LTR MaLR -5 374 1 3 1433 1183 156 14 5 chr4 111260434 111260646 -44369474 + URR1B DNA MER1_type 12 225 0 3 1433 335 198 60 36 chr4 111261052 111261136 -44368984 - PB1D10 SINE Alu -20 97 12 3 1433 21 0 0 0 chr4 111261153 111261174 -44368946 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 501 257 9 0 chr4 111261204 111261313 -44368807 - RSINE1 SINE B4 -31 134 25 3 1433 2108 102 13 0 chr4 111261323 111261637 -44368483 - ORR1A2 LTR MaLR -8 319 2 3 1433 184 390 0 0 chr4 111261821 111261903 -44368217 - MIRb SINE MIR -66 202 121 4 1433 917 283 44 19 chr4 111262158 111262428 -44367692 + B4A SINE B4 2 278 -14 4 1433 193 279 15 0 chr4 111262561 111262629 -44367491 - MIRb SINE MIR -168 100 32 4 1433 294 300 38 0 chr4 111263019 111263099 -44367021 + ID SINE ID 1 83 -141 4 1433 331 192 0 48 chr4 111263100 111263204 -44366916 + GA-rich Low_complexity Low_complexity 2 100 0 4 1433 735 151 0 0 chr4 111263237 111263363 -44366757 + CT-rich Low_complexity Low_complexity 4 129 0 4 1433 231 69 0 0 chr4 111263363 111263392 -44366728 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 4 1433 4606 219 25 12 chr4 111263392 111263794 -44366326 - Lx5 LINE L1 0 7050 6640 4 1433 225 0 0 0 chr4 111263794 111263819 -44366301 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4 1433 4606 219 25 12 chr4 111263819 111264302 -44365818 - Lx5 LINE L1 -411 6639 6154 4 1433 198 0 0 0 chr4 111265037 111265059 -44365061 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1433 240 163 0 0 chr4 111265061 111265104 -44365016 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1433 508 233 11 34 chr4 111265137 111265271 -44364849 - B4A SINE B4 0 292 160 4 1433 320 292 148 31 chr4 111265318 111265541 -44364579 + RLTR42-int LTR ERVK 1153 1401 -4121 4 1433 300 27 0 0 chr4 111266155 111266192 -44363928 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 4 1433 288 0 0 0 chr4 111266208 111266240 -44363880 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1433 272 269 151 0 chr4 111266493 111266612 -44363508 - MIR3 SINE MIR -5 203 67 4 1433 330 26 0 0 chr4 111266625 111266664 -44363456 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1433 3366 73 141 0 chr4 111266812 111267288 -44362832 - Lx3A LINE L1 0 6981 6439 4 1433 244 346 117 38 chr4 111267508 111267799 -44362321 - MLT1I LTR MaLR 0 411 98 4 1433 265 245 188 31 chr4 111268097 111268257 -44361863 + HAL1b LINE L1 1595 1779 -230 4 1433 253 324 126 10 chr4 111268299 111268505 -44361615 + Lx8 LINE L1 7150 7379 -94 4 1433 243 312 0 0 chr4 111268970 111269034 -44361086 + L2b LINE L2 3312 3375 0 4 1433 414 0 0 0 chr4 111269334 111269380 -44360740 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1433 235 310 60 34 chr4 111269690 111269807 -44360313 - MIR SINE MIR -19 243 124 4 1433 21 0 0 0 chr4 111270487 111270508 -44359612 + AT_rich Low_complexity Low_complexity 1 21 0 4 1433 238 312 116 73 chr4 111271230 111271489 -44358631 - L2b LINE L2 -193 3182 2913 4 1433 583 273 58 6 chr4 111271775 111271948 -44358172 + MIRc SINE MIR 86 267 -1 4 1433 375 186 0 0 chr4 111272164 111272261 -44357859 + (TCCA)n Simple_repeat Simple_repeat 1 97 0 4 1433 221 345 88 0 chr4 111272765 111272878 -44357242 + MIR SINE MIR 68 190 -72 4 1433 288 224 39 58 chr4 111273168 111273272 -44356848 + MER3 DNA MER1_type 86 187 -22 4 1433 211 323 0 0 chr4 111274705 111274767 -44355353 - L2a LINE L2 0 3426 3365 4 1433 482 75 12 0 chr4 111275149 111275229 -44354891 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 4 1433 225 0 0 0 chr4 111275723 111275748 -44354372 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1433 432 314 83 32 chr4 111275989 111276206 -44353914 + MLT1A1 LTR MaLR 2 229 -179 4 1433 375 214 24 0 chr4 111277183 111277267 -44352853 + GA-rich Low_complexity Low_complexity 3 88 0 4 1433 536 77 13 0 chr4 111277267 111277345 -44352775 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 4 1433 218 275 32 21 chr4 111278243 111278336 -44351784 - MIRb SINE MIR -70 198 105 4 1433 219 234 195 58 chr4 111279104 111279258 -44350862 + MIR SINE MIR 19 193 -69 4 1433 327 257 188 0 chr4 111279935 111280036 -44350084 - PB1 SINE Alu -7 120 1 4 1434 225 150 24 24 chr4 111280183 111280224 -44349896 - L1Md_Gf LINE L1 -6379 143 103 4 1434 189 154 0 0 chr4 111281054 111281093 -44349027 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 4 1434 180 288 110 0 chr4 111281176 111281249 -44348871 - L2c LINE L2 -60 3327 3247 4 1434 262 264 0 40 chr4 111281313 111281388 -44348732 - ID4_ SINE ID -11 72 1 4 1434 235 320 29 48 chr4 111281414 111281519 -44348601 - PB1D7 SINE Alu -8 112 10 4 1434 642 267 101 4 chr4 111281709 111281976 -44348144 - RMER10A LTR ERVL -28 414 122 4 1434 705 278 185 34 chr4 111282912 111283631 -44346489 - Lx8 LINE L1 -4 7469 6617 4 1434 1062 223 290 6 chr4 111283667 111283907 -44346213 - Lx8 LINE L1 -982 6491 6182 4 1434 249 119 0 0 chr4 111283907 111283949 -44346171 + (CATA)n Simple_repeat Simple_repeat 2 43 0 4 1434 310 284 53 45 chr4 111283949 111284049 -44346071 - Lx8 LINE L1 -1292 6181 6082 4 1434 186 43 0 0 chr4 111284319 111284342 -44345778 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1434 396 235 66 74 chr4 111284350 111284636 -44345484 + L1MC LINE L1 5305 5606 -588 4 1434 276 100 0 0 chr4 111284637 111284677 -44345443 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1434 234 298 24 12 chr4 111284721 111284806 -44345314 + L1MC LINE L1 5681 5766 -2116 4 1434 2320 152 118 27 chr4 111286426 111286900 -44343220 + Lx9 LINE L1 6840 7356 -288 4 1434 333 0 0 0 chr4 111286905 111286942 -44343178 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1434 546 147 36 58 chr4 111286942 111287079 -44343041 + Lx9 LINE L1 7503 7636 -8 4 1434 249 33 0 0 chr4 111287446 111287476 -44342644 + (GAA)n Simple_repeat Simple_repeat 2 31 0 4 1434 228 293 10 42 chr4 111289301 111289397 -44340723 + MIRb SINE MIR 107 199 -69 4 1434 243 273 155 75 chr4 111289516 111289690 -44340430 - MIRb SINE MIR -31 237 50 4 1434 318 331 0 37 chr4 111290218 111290353 -44339767 + CT-rich Low_complexity Low_complexity 1 130 0 4 1434 280 281 167 0 chr4 111290684 111290798 -44339322 - MER2 DNA MER2_type 0 345 213 4 1434 797 176 7 27 chr4 111290806 111290952 -44339168 - B1_Mur2 SINE Alu 0 149 7 4 1434 447 240 197 0 chr4 111290960 111291143 -44338977 - MER2 DNA MER2_type -125 220 2 4 1434 382 293 106 0 chr4 111292137 111292260 -44337860 + B1F2 SINE Alu 7 142 -7 4 1434 348 169 0 0 chr4 111292296 111292373 -44337747 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1434 326 195 12 0 chr4 111292376 111292458 -44337662 + GA-rich Low_complexity Low_complexity 1 83 0 4 1434 180 310 36 99 chr4 111292505 111292616 -44337504 - L2c LINE L2 -228 3159 3056 4 1434 395 291 29 29 chr4 111293416 111293606 -44336514 + MIRb SINE MIR 16 201 -61 4 1434 219 301 66 34 chr4 111293670 111293829 -44336291 + MIRb SINE MIR 20 196 -72 4 1434 276 149 0 0 chr4 111294037 111294084 -44336036 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1434 212 341 87 22 chr4 111294528 111294711 -44335409 - L2b LINE L2 -231 3156 2962 4 1434 359 297 114 6 chr4 111294853 111295029 -44335091 - LTR78 LTR ERV1 -119 1185 991 4 1434 234 0 0 0 chr4 111296156 111296182 -44333938 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1434 188 241 17 17 chr4 111296610 111296669 -44333451 + L3 LINE CR1 4077 4135 -354 4 1434 180 333 56 0 chr4 111297394 111297484 -44332636 + MIRm SINE MIR 77 171 -105 4 1434 337 333 44 40 chr4 111298041 111298266 -44331854 + MIRb SINE MIR 43 268 0 4 1434 24 0 0 0 chr4 111298492 111298516 -44331604 + AT_rich Low_complexity Low_complexity 1 24 0 4 1434 368 257 70 9 chr4 111300653 111300767 -44329353 + MIRb SINE MIR 88 208 -60 4 1434 198 234 154 15 chr4 111302293 111302358 -44327762 - L2b LINE L2 -12 3363 3290 4 1434 644 311 107 12 chr4 111303876 111304202 -44325918 - MLT2D LTR ERVL -57 357 1 4 1434 477 0 0 0 chr4 111304539 111304592 -44325528 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1434 3006 29 3 3 chr4 111304692 111305038 -44325082 - ORR1A0 LTR MaLR 0 346 1 4 1434 633 38 0 0 chr4 111305202 111305282 -44324838 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1434 636 263 213 13 chr4 111305522 111305761 -44324359 + B4A SINE B4 4 290 -2 4 1434 492 194 8 16 chr4 111305776 111305902 -44324218 + (TA)n Simple_repeat Simple_repeat 1 125 0 4 1434 783 70 0 0 chr4 111306175 111306290 -44323830 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1434 1446 225 75 6 chr4 111306349 111306680 -44323440 + ORR1D2 LTR MaLR 17 370 0 4 1434 222 37 0 0 chr4 111308017 111308044 -44322076 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 4 1434 211 371 0 17 chr4 111308120 111308238 -44321882 + CT-rich Low_complexity Low_complexity 4 119 0 4 1434 1446 261 27 20 chr4 111309378 111309783 -44320337 - Lx5 LINE L1 -9 7041 6652 4 1434 914 301 173 19 chr4 111310036 111310452 -44319668 - MLT2B4 LTR ERVL -62 494 15 4 1434 366 307 0 34 chr4 111310973 111311091 -44319029 - ID_B1 SINE B4 -31 193 80 4 1434 270 290 43 11 chr4 111311490 111311584 -44318536 - MIRb SINE MIR -51 217 121 4 1434 342 0 0 0 chr4 111311728 111311766 -44318354 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1434 344 312 79 40 chr4 111312263 111312490 -44317630 - MLT1K LTR MaLR -25 570 335 4 1434 192 40 0 0 chr4 111312519 111312544 -44317576 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1434 393 151 21 31 chr4 111312614 111312710 -44317410 + (TATG)n Simple_repeat Simple_repeat 2 96 0 4 1434 31 58 0 0 chr4 111312718 111312770 -44317350 + AT_rich Low_complexity Low_complexity 1 52 0 4 1434 269 284 128 0 chr4 111315156 111315258 -44314862 + L2a LINE L2 3276 3390 -36 4 1434 786 303 32 20 chr4 111315322 111315568 -44314552 + B4 SINE B4 21 269 -23 4 1434 357 125 0 0 chr4 111315573 111315629 -44314491 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1434 288 0 0 0 chr4 111315691 111315723 -44314397 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1434 405 70 0 0 chr4 111315723 111315780 -44314340 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1434 1125 76 0 0 chr4 111315824 111315835 -44314285 - B1_Mus1 SINE Alu -2 146 136 4 1434 387 0 0 0 chr4 111315835 111315878 -44314242 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1434 1125 76 0 0 chr4 111315878 111316010 -44314110 - B1_Mus1 SINE Alu -13 135 4 4 1434 647 253 77 27 chr4 111317193 111317376 -44312744 + B3A SINE B2 1 192 -6 5 1434 429 36 0 0 chr4 111318444 111318499 -44311621 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1434 617 259 54 6 chr4 111318500 111318667 -44311453 + MER20 DNA MER1_type 30 204 -15 5 1434 181 302 16 0 chr4 111319266 111319329 -44310791 - L2c LINE L2 -54 3333 3270 5 1434 259 216 95 0 chr4 111319416 111319490 -44310630 - MIRb SINE MIR -102 166 86 5 1434 474 18 0 0 chr4 111320376 111320431 -44309689 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1434 396 0 0 0 chr4 111320432 111320476 -44309644 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 5 1434 660 264 0 0 chr4 111320511 111320659 -44309461 + B1_Mur1 SINE Alu 2 149 0 5 1434 240 86 0 0 chr4 111320674 111320709 -44309411 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1434 1216 106 25 45 chr4 111320954 111321118 -44309002 + B2_Mm2 SINE B2 1 161 -34 5 1434 261 0 0 0 chr4 111321118 111321147 -44308973 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1434 1216 106 25 45 chr4 111321147 111321180 -44308940 + B2_Mm2 SINE B2 162 194 -1 5 1434 381 294 163 22 chr4 111321183 111321404 -44308716 + MLT1D LTR MaLR 217 465 -2 5 1434 232 337 45 0 chr4 111323155 111323244 -44306876 + L2 LINE L2 2812 2904 -515 5 1434 243 23 68 0 chr4 111323369 111323413 -44306707 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1434 975 231 15 5 chr4 111323559 111323763 -44306357 - B3 SINE B2 0 216 11 5 1434 261 321 0 12 chr4 111323760 111323842 -44306278 - ID2 SINE ID -2 81 1 5 1434 414 57 0 0 chr4 111324355 111324408 -44305712 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 5 1434 474 120 0 0 chr4 111325145 111325220 -44304900 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 5 1434 213 310 133 33 chr4 111325274 111325364 -44304756 - MIRb SINE MIR -87 181 83 5 1434 702 280 50 66 chr4 111325544 111325880 -44304240 - MLT1G1 LTR MaLR -267 288 3 5 1434 232 328 46 9 chr4 111326338 111326445 -44303675 + MIR SINE MIR 3 108 -154 5 1434 293 329 153 28 chr4 111326727 111326871 -44303249 + MIRb SINE MIR 24 185 -83 5 1434 459 0 0 0 chr4 111326924 111326975 -44303145 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1434 1180 68 0 0 chr4 111327429 111327576 -44302544 + B1_Mus1 SINE Alu 2 148 0 5 1434 228 111 0 0 chr4 111327578 111327614 -44302506 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1434 1166 75 0 6 chr4 111327620 111327782 -44302338 + L1_Mus2 LINE L1 6406 6566 0 5 1434 198 325 104 0 chr4 111328702 111328779 -44301341 + MIR SINE MIR 103 187 -75 5 1434 196 256 182 33 chr4 111330340 111330461 -44299659 + MIRb SINE MIR 124 262 0 5 1434 540 0 0 0 chr4 111333966 111334026 -44296094 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1434 186 225 0 0 chr4 111334419 111334459 -44295661 - MIRm SINE MIR -147 129 90 5 1434 1181 63 0 6 chr4 111334900 111335060 -44295060 + (TCTCCC)n Simple_repeat Simple_repeat 4 162 0 5 1434 330 296 102 48 chr4 111337668 111337874 -44292246 + L3 LINE CR1 4161 4377 -112 5 1434 549 0 0 0 chr4 111338410 111338471 -44291649 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 5 1434 222 333 0 0 chr4 111338882 111338942 -44291178 - MIRm SINE MIR 0 276 217 5 1434 325 381 10 30 chr4 111339636 111339836 -44290284 + MIRb SINE MIR 28 223 -45 5 1434 213 120 38 57 chr4 111340749 111340802 -44289318 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 5 1434 281 157 370 0 chr4 111341298 111341406 -44288714 + Lx9 LINE L1 7497 7644 0 5 1434 384 255 6 30 chr4 111341458 111341581 -44288539 + PB1D10 SINE Alu 2 116 -1 5 1434 663 129 0 0 chr4 111342255 111342387 -44287733 + (TC)n Simple_repeat Simple_repeat 2 133 0 5 1434 1026 253 20 4 chr4 111342506 111342752 -44287368 - B4A SINE B4 -41 251 2 5 1434 1851 221 40 90 chr4 111342896 111343427 -44286693 + RLTR18B LTR ERVK 5 508 -4 5 1434 389 359 104 7 chr4 111343557 111343711 -44286409 - MIRb SINE MIR -80 188 20 5 1434 215 215 22 29 chr4 111344855 111344940 -44285180 + GA-rich Low_complexity Low_complexity 1 84 0 5 1434 342 0 0 0 chr4 111344958 111344996 -44285124 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1434 244 164 78 47 chr4 111344996 111345060 -44285060 + B1_Mm SINE Alu 74 139 -8 5 1434 651 88 0 0 chr4 111345068 111345159 -44284961 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1434 1746 186 84 8 chr4 111345180 111345559 -44284561 + MTD LTR MaLR 12 419 0 5 1434 195 129 0 0 chr4 111345566 111345597 -44284523 + (GGA)n Simple_repeat Simple_repeat 3 33 0 5 1434 2416 198 174 34 chr4 111345610 111346259 -44283861 + Lx7 LINE L1 6846 7585 -111 5 1434 2995 29 3 0 chr4 111347068 111347413 -44282707 - ORR1A0 LTR MaLR 0 346 1 5 1434 214 262 0 0 chr4 111348028 111348089 -44282031 + A-rich Low_complexity Low_complexity 2 62 0 5 1434 220 279 50 12 chr4 111348693 111348773 -44281347 + ID4_ SINE ID 1 83 0 5 1434 1692 21 0 10 chr4 111349789 111349985 -44280135 - L1Md_F2 LINE L1 -750 5832 5639 5 1434 6058 60 1 7 chr4 111349985 111350737 -44279383 + L1Md_F2 LINE L1 5819 6566 -16 5 1434 769 277 5 24 chr4 111351684 111351891 -44278229 - Lx5 LINE L1 -353 6697 6495 5 1434 2196 89 96 0 chr4 111351913 111352227 -44277893 - L1_Mus1 LINE L1 0 6567 6224 5 1434 1584 259 77 37 chr4 111352244 111352726 -44277394 - Lx5 LINE L1 -695 6355 5855 5 1434 252 229 98 59 chr4 111352797 111352950 -44277170 + MER33 DNA MER1_type 69 227 -97 5 1434 246 261 42 24 chr4 111352976 111353099 -44277021 + MTE2a LTR MaLR 202 322 -52 5 1434 25 0 0 0 chr4 111353244 111353269 -44276851 + AT_rich Low_complexity Low_complexity 1 25 0 5 1434 332 340 23 42 chr4 111353396 111353591 -44276529 - L1ME4a LINE L1 -281 5843 5653 5 1434 377 316 89 11 chr4 111353685 111353864 -44276256 - LTR16C LTR ERVL 0 489 297 5 1434 450 36 0 0 chr4 111354108 111354164 -44275956 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1434 730 203 20 27 chr4 111355104 111355251 -44274869 - B1F SINE Alu -1 148 3 5 1434 230 355 0 11 chr4 111355460 111355554 -44274566 + MLT2B2 LTR ERVL 3 95 -420 5 1434 692 310 28 0 chr4 111355981 111356194 -44273926 - B4A SINE B4 -41 251 33 5 1434 1058 142 122 0 chr4 111356261 111356458 -44273662 + URR1A DNA MER1_type 6 226 0 5 1434 440 339 0 8 chr4 111356909 111357028 -44273092 - RSINE1 SINE B4 -19 146 29 5 1434 217 51 51 0 chr4 111357034 111357073 -44273047 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1434 336 315 0 11 chr4 111357082 111357172 -44272948 - MER58B DNA MER1_type -35 306 218 5 1434 724 276 47 124 chr4 111357189 111357553 -44272567 + ORR1E LTR MaLR 18 353 -6 5 1434 526 297 57 0 chr4 111357719 111357894 -44272226 + MER5A DNA MER1_type 5 189 0 5 1434 263 246 14 0 chr4 111357957 111358026 -44272094 + RMER30 DNA MER1_type 133 202 0 5 1434 373 198 10 10 chr4 111359969 111360066 -44270054 + GA-rich Low_complexity Low_complexity 3 99 0 5 1434 247 308 74 41 chr4 111360901 111361023 -44269097 - MER20B DNA MER1_type -294 489 364 5 1434 486 75 0 0 chr4 111361132 111361199 -44268921 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1434 699 83 51 6 chr4 111361199 111361356 -44268764 + (GA)n Simple_repeat Simple_repeat 2 165 0 5 1434 264 59 0 0 chr4 111362339 111362373 -44267747 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1434 498 246 7 91 chr4 111362875 111363018 -44267102 + B4 SINE B4 162 292 0 5 1434 219 36 0 0 chr4 111363043 111363071 -44267049 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 5 1434 662 316 103 16 chr4 111364337 111364719 -44265401 + Arthur1 DNA Tip100 6 442 -3505 5 1434 367 300 83 90 chr4 111364722 111365009 -44265111 + Arthur1 DNA Tip100 3330 3635 -312 5 1434 369 260 31 0 chr4 111365009 111365105 -44265015 + PB1D10 SINE Alu 1 99 -18 5 1434 367 300 83 90 chr4 111365105 111365393 -44264727 + Arthur1 DNA Tip100 3636 3901 -46 5 1434 641 243 63 118 chr4 111365394 111365632 -44264488 + B4A SINE B4 1 225 -67 5 1434 279 0 0 0 chr4 111365632 111365663 -44264457 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1434 1391 186 75 136 chr4 111365953 111366191 -44263929 + ORR1D1 LTR MaLR 1 220 -154 5 1434 3287 53 2 2 chr4 111366191 111366587 -44263533 + MTA_Mm LTR MaLR 1 396 0 5 1434 1391 186 75 136 chr4 111366587 111366746 -44263374 + ORR1D1 LTR MaLR 221 374 0 5 1434 477 264 32 0 chr4 111367016 111367141 -44262979 + RMER10B LTR ERVL 270 398 0 5 1434 569 335 15 60 chr4 111367247 111367306 -44262814 - B4A SINE B4 -9 283 232 5 1434 1899 106 28 28 chr4 111367306 111367628 -44262492 - RLTRETN_Mm LTR ERVK 0 322 1 5 1434 569 335 15 60 chr4 111367628 111367835 -44262285 - B4A SINE B4 -61 231 29 5 1434 237 266 0 12 chr4 111368579 111368603 -44261517 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1434 225 0 0 0 chr4 111368603 111368628 -44261492 + (TCTA)n Simple_repeat Simple_repeat 3 27 0 5 1434 237 266 0 12 chr4 111368628 111368683 -44261437 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1434 336 64 0 0 chr4 111368704 111368751 -44261369 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1434 811 324 45 35 chr4 111369672 111369960 -44260160 - B4A SINE B4 -1 291 1 5 1434 220 342 5 10 chr4 111370032 111370146 -44259974 + GA-rich Low_complexity Low_complexity 1 113 0 5 1434 2868 86 90 11 chr4 111370678 111371113 -44259007 + Lx LINE L1 6183 6651 -3 5 1434 8115 59 4 2 chr4 111371137 111372455 -44257665 + L1_Mus2 LINE L1 5246 6566 0 5 1434 32 91 0 0 chr4 111372462 111372550 -44257570 + AT_rich Low_complexity Low_complexity 1 88 0 5 1434 406 366 70 13 chr4 111372662 111372964 -44257156 + Lx8 LINE L1 7148 7466 -7 5 1434 3896 142 57 34 chr4 111373249 111373568 -44256552 + RMER6A LTR ERVK 1 319 -437 5 1434 528 16 0 0 chr4 111373568 111373629 -44256491 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1434 3896 142 57 34 chr4 111373629 111374048 -44256072 + RMER6A LTR ERVK 320 756 0 5 1434 285 170 19 0 chr4 111374121 111374174 -44255946 - MLT1B LTR MaLR 0 390 337 5 1434 1957 206 35 7 chr4 111374221 111374627 -44255493 + MTD LTR MaLR 3 419 0 5 1434 2428 229 41 71 chr4 111374627 111375136 -44254984 + MTD-int LTR MaLR 1 513 -745 5 1434 1333 77 43 22 chr4 111375136 111375321 -44254799 + B2_Mm2 SINE B2 4 192 -3 5 1434 2428 229 41 71 chr4 111375321 111375588 -44254532 + MTD-int LTR MaLR 514 754 -504 5 1434 1185 247 221 37 chr4 111375590 111376132 -44253988 - RLTR26 LTR ERVK 0 642 1 6 1434 1004 265 82 18 chr4 111376134 111376526 -44253594 + MTD-int LTR MaLR 753 1169 -89 5 1434 227 195 167 24 chr4 111376534 111376660 -44253460 + MTD-int LTR MaLR 1080 1223 -35 5 1434 270 56 0 0 chr4 111376661 111376697 -44253423 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1434 908 214 10 5 chr4 111376757 111376964 -44253156 + MTD LTR MaLR 3 210 -209 6 1434 1100 106 6 0 chr4 111377091 111377261 -44252859 + (GAGAA)n Simple_repeat Simple_repeat 5 175 0 6 1434 430 288 130 5 chr4 111377263 111377455 -44252665 + MTD LTR MaLR 204 419 0 6 1434 1106 241 65 29 chr4 111378114 111378392 -44251728 - B4A SINE B4 0 292 5 6 1434 298 306 32 48 chr4 111380055 111380237 -44249883 - MIRb SINE MIR -75 193 8 6 1434 791 265 73 118 chr4 111380239 111380611 -44249509 - MTE2a LTR MaLR 0 379 25 6 1434 389 255 51 0 chr4 111380708 111380806 -44249314 - PB1D9 SINE Alu -16 104 2 6 1434 366 23 0 0 chr4 111380887 111380930 -44249190 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1434 246 339 67 57 chr4 111381344 111381538 -44248582 + L1MEc LINE L1 235 430 -5970 6 1434 406 360 28 28 chr4 111381740 111381957 -44248163 - MER70A LTR ERVL -41 431 215 6 1434 679 164 98 7 chr4 111382014 111382167 -44247953 + B2_Mm2 SINE B2 9 175 -20 6 1434 351 0 0 0 chr4 111382462 111382501 -44247619 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1434 299 290 31 41 chr4 111382668 111382765 -44247355 + RSINE1 SINE B4 2 97 -68 6 1434 675 262 83 10 chr4 111382806 111382999 -44247121 + B4A SINE B4 33 239 -53 6 1434 393 58 0 0 chr4 111383051 111383103 -44247017 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1434 451 281 64 14 chr4 111383155 111383296 -44246824 - B1_Mur1 SINE Alu 0 149 2 6 1434 219 304 0 0 chr4 111383527 111383606 -44246514 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1434 1182 62 0 0 chr4 111383819 111383965 -44246155 + B1_Mus2 SINE Alu 2 147 0 6 1434 243 0 0 0 chr4 111383965 111383992 -44246128 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1434 513 32 0 0 chr4 111384196 111384259 -44245861 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1434 585 271 64 17 chr4 111384289 111384462 -44245658 - B4A SINE B4 -44 248 68 6 1434 279 0 0 0 chr4 111384533 111384564 -44245556 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1434 2079 91 16 0 chr4 111384620 111384929 -44245191 + ORR1A2 LTR MaLR 14 327 0 6 1434 994 220 46 9 chr4 111384935 111385151 -44244969 - MTD LTR MaLR -195 224 1 6 1434 1989 242 101 111 chr4 111385259 111386127 -44243993 + RMER13A LTR ERVK 1 860 0 6 1434 671 306 0 40 chr4 111386206 111386431 -44243689 + MLT1D LTR MaLR 288 503 -2 6 1434 198 0 0 0 chr4 111386533 111386555 -44243565 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1434 6810 166 47 63 chr4 111386739 111388111 -44242009 + RLTR21 LTR ERVK 1 1353 -219 6 1434 207 0 0 0 chr4 111388111 111388134 -44241986 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 1434 6810 166 47 63 chr4 111388134 111388198 -44241922 + RLTR21 LTR ERVK 1354 1414 -158 6 1434 279 0 0 0 chr4 111388198 111388229 -44241891 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1434 477 0 0 0 chr4 111388229 111388281 -44241839 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1434 6810 166 47 63 chr4 111388281 111388440 -44241680 + RLTR21 LTR ERVK 1415 1571 -1 6 1434 1818 301 63 8 chr4 111388646 111389263 -44240857 + Lx8 LINE L1 6823 7473 0 6 1434 35 63 0 0 chr4 111389322 111389385 -44240735 + AT_rich Low_complexity Low_complexity 1 63 0 6 1434 1524 181 82 79 chr4 111389753 111390120 -44240000 + ORR1D1 LTR MaLR 5 372 -2 6 1434 2099 133 34 6 chr4 111390541 111390890 -44239230 - RLTR15 LTR ERVK 0 359 1 6 1434 614 253 60 98 chr4 111391329 111391513 -44238607 - B3A SINE B2 -11 184 8 6 1434 255 262 18 97 chr4 111391521 111391635 -44238485 + L1M5 LINE L1 5683 5787 -453 6 1434 372 94 0 0 chr4 111391809 111391862 -44238258 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1434 1248 125 39 61 chr4 111395011 111395241 -44234879 - URR1B DNA MER1_type 0 225 1 6 1434 262 283 113 0 chr4 111396314 111396420 -44233700 - L1MC4 LINE L1 -152 7890 7773 6 1434 342 0 0 0 chr4 111396561 111396599 -44233521 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1434 990 96 0 0 chr4 111396599 111396734 -44233386 - B1_Mus1 SINE Alu -11 137 3 6 1434 364 264 81 16 chr4 111396905 111397090 -44233030 - L1ME2 LINE L1 -189 5975 5779 6 1434 1181 292 16 66 chr4 111397221 111397587 -44232533 - ORR1E LTR MaLR -7 352 5 6 1434 823 284 48 84 chr4 111397590 111397901 -44232219 - ORR1E LTR MaLR -59 300 1 6 1434 1477 254 64 50 chr4 111397902 111398677 -44231443 - L1MA7 LINE L1 -51 6249 5501 6 1434 419 232 43 21 chr4 111398728 111398946 -44231174 - L1MA7 LINE L1 -813 5330 5109 6 1434 3026 49 66 5 chr4 111399647 111400058 -44230062 - Lx3_Mus LINE L1 -8 7001 6566 6 1434 3221 86 46 53 chr4 111400060 111400586 -44229534 + Lx3_Mus LINE L1 6039 6560 -449 6 1434 330 253 146 16 chr4 111402026 111402211 -44227909 - L1MA7 LINE L1 -1836 4310 4102 6 1434 238 208 0 0 chr4 111402917 111402965 -44227155 + (CATA)n Simple_repeat Simple_repeat 2 49 0 6 1434 436 177 25 0 chr4 111402974 111403053 -44227067 - B1_Mur1 SINE Alu -7 142 62 6 1434 466 274 9 0 chr4 111403036 111403149 -44226971 - B1F2 SINE Alu -13 136 23 6 1434 949 285 43 73 chr4 111403419 111403790 -44226330 - MTE-int LTR MaLR -1065 515 156 6 1434 16671 82 3 3 chr4 111403792 111404853 -44225267 - L1_Mus1 LINE L1 -383 6184 5133 6 1434 1066 102 0 0 chr4 111404853 111405000 -44225120 - B1_Mus2 SINE Alu 0 147 1 6 1434 16671 98 8 5 chr4 111405000 111406630 -44223490 - L1_Mus1 LINE L1 -751 5132 3489 6 1434 376 262 56 0 chr4 111406763 111406889 -44223231 - L1MB7 LINE L1 -349 5835 5703 6 1434 761 103 0 0 chr4 111406890 111406997 -44223123 + B2_Mm2 SINE B2 1 107 -88 6 1434 450 79 0 0 chr4 111407008 111407071 -44223049 + (CAAAG)n Simple_repeat Simple_repeat 2 64 0 6 1434 265 281 163 15 chr4 111407136 111407462 -44222658 - L1MB7 LINE L1 -470 5714 5343 6 1434 317 260 92 13 chr4 111407569 111407721 -44222399 - L1MB7 LINE L1 -3752 2394 2231 6 1434 21 0 0 0 chr4 111407721 111407742 -44222378 + AT_rich Low_complexity Low_complexity 1 21 0 6 1434 463 210 93 87 chr4 111408448 111408620 -44221500 - ORR1E LTR MaLR -4 375 203 6 1434 242 218 250 29 chr4 111408761 111408865 -44221255 - MTC-int LTR MaLR -39 1541 1415 6 1434 1632 232 70 8 chr4 111408866 111409252 -44220868 - MTD LTR MaLR 0 419 10 6 1434 3871 52 2 2 chr4 111409314 111409843 -44220277 + L1Md_F2 LINE L1 6097 6582 0 6 1434 549 312 82 43 chr4 111409875 111410106 -44220014 - MTC-int LTR MaLR -273 985 746 6 1434 416 240 0 51 chr4 111410077 111410196 -44219924 - MTC-int LTR MaLR -847 411 312 6 1434 1009 287 114 16 chr4 111410295 111410663 -44219457 - MTD LTR MaLR -15 404 1 6 179 1621 298 96 45 chr4 111410663 111411302 -44218818 - MTE-int LTR MaLR -187 1393 722 6 1435 228 330 64 9 chr4 111411910 111412020 -44218100 - RMER15 LTR ERVL -15 560 445 6 1435 231 270 77 39 chr4 111412508 111412612 -44217508 - MTE-int LTR MaLR -897 683 576 6 1435 658 263 64 6 chr4 111412666 111412823 -44217297 - MTE-int LTR MaLR -1387 193 28 6 1435 585 327 62 31 chr4 111412898 111413125 -44216995 - ORR1E LTR MaLR -125 234 1 6 1435 279 0 0 0 chr4 111413698 111413729 -44216391 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1435 734 191 105 0 chr4 111413731 111413883 -44216237 - B3A SINE B2 -30 168 1 6 1435 279 297 44 19 chr4 111414271 111414429 -44215691 - L1MEf LINE L1 -3928 2456 2295 6 1435 1745 151 30 55 chr4 111414430 111414794 -44215326 - ORR1B2 LTR MaLR 0 367 13 6 1435 356 205 137 0 chr4 111414898 111415015 -44215105 - Lx7 LINE L1 -5 7691 7559 6 1435 21 0 0 0 chr4 111415101 111415122 -44214998 + AT_rich Low_complexity Low_complexity 1 21 0 6 1435 291 284 0 12 chr4 111415356 111415438 -44214682 - ID4 SINE ID 0 83 3 6 1435 319 307 113 4 chr4 111415501 111415730 -44214390 - L1MEf LINE L1 -4560 1918 1665 6 1435 2353 136 60 26 chr4 111416082 111416498 -44213622 + Lx4A LINE L1 6629 7058 0 6 1435 183 324 35 43 chr4 111416591 111416707 -44213413 + MIR3 SINE MIR 85 199 -9 6 1435 317 272 47 0 chr4 111417113 111417206 -44212914 - PB1D10 SINE Alu -6 111 15 6 1435 732 243 52 62 chr4 111417406 111417599 -44212521 + ORR1D1 LTR MaLR 1 191 -183 6 1435 296 272 89 73 chr4 111417931 111418054 -44212066 - RMER20B LTR ERVK -502 125 1 6 1435 989 180 112 0 chr4 111418054 111418256 -44211864 + ORR1D1 LTR MaLR 150 374 0 6 1435 23 0 0 0 chr4 111418269 111418292 -44211828 + AT_rich Low_complexity Low_complexity 1 23 0 6 1435 514 166 32 74 chr4 111418893 111419082 -44211038 + RMER17C LTR ERVK 95 275 -135 6 1435 189 0 0 0 chr4 111419082 111419103 -44211017 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1435 212 243 14 0 chr4 111419539 111419613 -44210507 + CT-rich Low_complexity Low_complexity 2 76 0 6 1435 356 300 32 17 chr4 111420040 111420143 -44209977 + B1F SINE Alu 6 107 -13 6 1435 585 0 0 0 chr4 111420143 111420208 -44209912 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 6 1435 322 324 25 67 chr4 111420208 111420223 -44209897 + PB1D7 SINE Alu 108 119 -1 6 1435 431 213 23 23 chr4 111420981 111421111 -44209009 + Lx4A LINE L1 6928 7057 -1 6 1435 890 180 0 6 chr4 111421734 111421913 -44208207 + CT-rich Low_complexity Low_complexity 2 179 0 6 1435 319 278 94 70 chr4 111422520 111422764 -44207356 - L1MC5 LINE L1 -434 7527 7278 6 1435 273 89 0 0 chr4 111423008 111423053 -44207067 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 6 1435 624 253 65 7 chr4 111423054 111423209 -44206911 - B4A SINE B4 -23 269 106 6 1435 363 208 54 2 chr4 111423304 111423414 -44206706 - Lx7 LINE L1 0 7696 7595 6 1435 360 0 0 0 chr4 111423441 111423481 -44206639 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1435 383 295 115 24 chr4 111423679 111424026 -44206094 - L1MB7 LINE L1 -6 6172 5783 6 1435 4458 104 112 6 chr4 111424136 111424844 -44205276 + L1VL2 LINE L1 261 1043 -5292 6 1435 3526 90 40 0 chr4 111424837 111425382 -44204738 + MusHAL1 LINE L1 357 923 -1789 6 1435 231 36 0 0 chr4 111426258 111426286 -44203834 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1435 189 0 0 0 chr4 111427108 111427129 -44202991 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1435 342 0 0 0 chr4 111427133 111427171 -44202949 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1435 1604 191 116 33 chr4 111427344 111427733 -44202387 + MTC LTR MaLR 1 421 0 6 1435 248 295 95 128 chr4 111427816 111428165 -44201955 + MLT1A1 LTR MaLR 19 389 -19 6 1435 1210 242 123 15 chr4 111429152 111429606 -44200514 - L1MB3 LINE L1 -3 6416 5914 6 1435 772 213 80 62 chr4 111429641 111429848 -44200272 - L1MB3 LINE L1 -584 5835 5560 6 1435 808 267 24 0 chr4 111429848 111430058 -44200062 - B3 SINE B2 -1 215 1 6 1435 847 248 101 39 chr4 111430058 111430542 -44199578 - L1MB3 LINE L1 -817 5559 5018 6 1435 928 296 188 26 chr4 111430576 111430959 -44199161 - L1MB3 LINE L1 -1956 4420 4021 6 1435 1218 209 118 30 chr4 111430959 111431289 -44198831 - ORR1E LTR MaLR 0 359 1 7 1435 928 296 188 26 chr4 111431289 111432035 -44198085 - L1MB3 LINE L1 -2356 4020 3109 6 1435 297 345 16 74 chr4 111432166 111432288 -44197832 - PB1D10 SINE Alu -1 116 2 7 1435 320 292 77 13 chr4 111432332 111432488 -44197632 - L1MB3 LINE L1 -3653 2729 2564 6 1435 278 250 0 0 chr4 111432492 111432564 -44197556 - L1MB3 LINE L1 -4791 1778 1661 6 1435 227 271 91 105 chr4 111432712 111432922 -44197198 - L1MB3 LINE L1 -4717 1667 1461 6 1435 228 212 212 0 chr4 111432941 111433021 -44197099 - L1MB3 LINE L1 -5009 1375 1279 6 1435 1160 256 113 114 chr4 111433133 111433399 -44196721 - L1MB3 LINE L1 -5253 1316 1038 6 1435 234 128 0 0 chr4 111433399 111433438 -44196682 + (CATA)n Simple_repeat Simple_repeat 3 41 0 7 1435 1160 256 113 114 chr4 111433438 111433504 -44196616 - L1MB3 LINE L1 -5532 1037 975 6 1435 238 291 38 12 chr4 111433504 111433584 -44196536 - ID4_ SINE ID 0 83 2 7 1435 1160 256 113 114 chr4 111433584 111434129 -44195991 - L1MB3 LINE L1 -5595 974 439 6 1435 11085 20 0 0 chr4 111434179 111435482 -44194638 - L1_Mm LINE L1 -1992 3891 2589 7 1435 3351 16 0 0 chr4 111435483 111435866 -44194254 + L1Md_T LINE L1 5204 5586 -297 7 1435 8422 34 0 0 chr4 111435866 111436862 -44193258 + L1Md_T LINE L1 5587 6582 0 7 1435 1505 186 23 30 chr4 111437311 111437616 -44192504 - ORR1D1 LTR MaLR 0 374 72 7 1435 379 295 42 0 chr4 111438394 111438489 -44191631 + PB1D10 SINE Alu 10 108 -9 7 1435 21 0 0 0 chr4 111438909 111438930 -44191190 + AT_rich Low_complexity Low_complexity 1 21 0 7 1435 561 279 6 42 chr4 111438930 111439095 -44191025 - RSINE1 SINE B4 -1 164 6 7 1435 3880 184 84 82 chr4 111439137 111440031 -44190089 + RMER19B LTR ERVK 1 896 -6 7 1435 29 0 0 0 chr4 111441870 111441899 -44188221 + AT_rich Low_complexity Low_complexity 1 29 0 7 1435 24 32 0 0 chr4 111443595 111443626 -44186494 + AT_rich Low_complexity Low_complexity 1 31 0 7 1435 900 310 82 20 chr4 111444053 111444458 -44185662 + MLT2C2 LTR ERVL 1 430 -34 7 1435 471 346 114 26 chr4 111444769 111445110 -44185010 + MLT1F-int LTR MaLR 1051 1400 -89 7 1435 6529 64 6 12 chr4 111445364 111446217 -44183903 - L1_Mus1 LINE L1 0 6567 5720 7 1435 1087 95 0 7 chr4 111446217 111446365 -44183755 - B1_Mus1 SINE Alu -1 147 1 7 1435 234 174 58 0 chr4 111446967 111447036 -44183084 - L1MA8 LINE L1 -23 6268 6196 7 1435 181 182 18 18 chr4 111448949 111449005 -44181115 + GA-rich Low_complexity Low_complexity 1 56 0 7 1435 1140 234 101 58 chr4 111452284 111452786 -44177334 - RMER4B LTR ERVK -9 576 17 7 1435 297 0 0 0 chr4 111453846 111453879 -44176241 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1435 236 100 25 0 chr4 111453879 111453919 -44176201 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1435 440 305 124 30 chr4 111455346 111455515 -44174605 - MLT1A LTR MaLR -189 185 1 7 1435 247 236 26 50 chr4 111455586 111455662 -44174458 - MIR SINE MIR -70 198 123 7 1435 620 87 11 0 chr4 111456208 111456300 -44173820 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 1435 351 0 0 0 chr4 111456300 111456339 -44173781 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1435 249 333 59 17 chr4 111456871 111456990 -44173130 - MIRb SINE MIR -100 168 45 7 1435 21 0 0 0 chr4 111457538 111457559 -44172561 + AT_rich Low_complexity Low_complexity 1 21 0 7 1435 321 26 0 0 chr4 111457698 111457736 -44172384 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1435 439 62 0 70 chr4 111457737 111457823 -44172297 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 1435 335 279 34 39 chr4 111457828 111458056 -44172064 + (TATATG)n Simple_repeat Simple_repeat 1 226 0 7 1435 194 128 0 25 chr4 111458249 111458289 -44171831 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1435 374 333 59 74 chr4 111459141 111459397 -44170723 + MER20B DNA MER1_type 81 332 -451 7 1435 4360 165 61 15 chr4 111459468 111460315 -44169805 - Lx4B LINE L1 -9 7049 6164 7 1435 381 238 0 9 chr4 111460317 111460423 -44169697 + Lx4A LINE L1 6034 6138 -920 7 1435 270 56 0 0 chr4 111460530 111460566 -44169554 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1435 1095 206 37 34 chr4 111460589 111460885 -44169235 + BGLII_B LTR ERVK 145 441 0 7 1435 6135 218 57 35 chr4 111461122 111462427 -44167693 - Lx7 LINE L1 -354 7342 6009 7 1435 832 192 171 0 chr4 111462427 111462620 -44167500 + URR1A DNA MER1_type 1 226 0 7 1435 6135 218 57 35 chr4 111462620 111462835 -44167285 - Lx7 LINE L1 -1688 6008 5789 7 1435 3419 115 25 30 chr4 111462847 111463438 -44166682 - RLTR19-int LTR ERVK -4121 2016 1429 7 1435 7205 57 0 15 chr4 111464319 111465258 -44164862 - L1Md_F2 LINE L1 -2 6580 5656 7 1435 5547 62 3 0 chr4 111465237 111465941 -44164179 + L1Md_F2 LINE L1 4997 5702 -181 7 1435 3707 154 46 11 chr4 111465951 111466665 -44163455 - Lx7 LINE L1 -99 5781 5043 7 1435 931 254 127 17 chr4 111466946 111467371 -44162749 - L1MA8 LINE L1 -30 6270 5778 7 1435 596 356 71 8 chr4 111467371 111467637 -44162483 - MLT1J1-int LTR MaLR -1036 351 69 7 1435 236 346 37 0 chr4 111467697 111467804 -44162316 - MLT1J1 LTR MaLR 0 444 334 7 1435 631 293 55 5 chr4 111468296 111468495 -44161625 - B3 SINE B2 -7 209 1 7 1435 672 36 0 0 chr4 111468691 111468774 -44161346 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 1435 944 99 42 7 chr4 111468782 111468924 -44161196 - B1_Mus1 SINE Alu 0 148 2 7 1435 284 307 106 44 chr4 111469980 111470140 -44159980 - MER110A LTR ERV1 -38 430 261 7 1435 441 219 69 50 chr4 111470391 111470550 -44159570 - L1MA4 LINE L1 -423 5877 5716 7 1435 850 219 18 0 chr4 111470900 111471069 -44159051 + Lx9 LINE L1 7226 7397 -247 7 1435 478 175 23 16 chr4 111471092 111471220 -44158900 + Lx9 LINE L1 7492 7620 -24 7 1435 1724 145 12 39 chr4 111471228 111471559 -44158561 - RLTRETN_Mm LTR ERVK 0 322 1 7 1435 34 0 0 0 chr4 111471565 111471599 -44158521 + AT_rich Low_complexity Low_complexity 1 34 0 7 1435 220 254 0 17 chr4 111471599 111471659 -44158461 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1435 33 66 0 0 chr4 111471995 111472056 -44158064 + AT_rich Low_complexity Low_complexity 1 61 0 7 1435 26 30 0 0 chr4 111472787 111472820 -44157300 + AT_rich Low_complexity Low_complexity 1 33 0 7 1435 3140 124 13 42 chr4 111472885 111473051 -44157069 - RLTR11A2 LTR ERVK -2 525 358 7 1435 3140 51 5 2 chr4 111473051 111473445 -44156675 + MTA_Mm LTR MaLR 1 395 -1 7 1435 3140 124 13 42 chr4 111473445 111473819 -44156301 - RLTR11A2 LTR ERVK -170 357 1 7 1435 1255 270 99 31 chr4 111473828 111474344 -44155776 - Lx9 LINE L1 -66 7578 7028 7 1435 289 294 128 0 chr4 111474918 111475020 -44155100 - B1_Mur1 SINE Alu -6 143 29 7 1435 26 30 0 0 chr4 111475535 111475568 -44154552 + AT_rich Low_complexity Low_complexity 1 33 0 7 1435 23 33 0 0 chr4 111475765 111475795 -44154325 + AT_rich Low_complexity Low_complexity 1 30 0 7 1435 8336 39 0 1 chr4 111476849 111478301 -44151819 - L1Md_F2 LINE L1 -12 6570 5121 7 1435 28 29 0 0 chr4 111478814 111478849 -44151271 + AT_rich Low_complexity Low_complexity 1 35 0 7 1435 474 283 23 76 chr4 111478854 111479026 -44151094 - RSINE1 SINE B4 0 165 3 7 1435 22 35 0 0 chr4 111479417 111479446 -44150674 + AT_rich Low_complexity Low_complexity 1 29 0 7 1435 4027 80 3 14 chr4 111479595 111480175 -44149945 - RLTR19-int LTR ERVK -4134 2003 1430 7 1435 241 319 9 0 chr4 111480176 111480289 -44149831 + (CCA)n Simple_repeat Simple_repeat 1 114 0 7 1435 180 216 0 0 chr4 111480301 111480352 -44149768 + (CCA)n Simple_repeat Simple_repeat 1 51 0 7 1435 268 320 0 0 chr4 111481522 111481600 -44148520 - ID4_ SINE ID -1 82 5 7 1435 1129 82 7 0 chr4 111481643 111481789 -44148331 - B1_Mus1 SINE Alu 0 148 2 7 1435 856 289 0 0 chr4 111481811 111482022 -44148098 - B3 SINE B2 -2 214 4 7 1435 326 352 116 24 chr4 111482285 111482535 -44147585 - Lx8 LINE L1 -4 7469 7197 7 1435 233 303 11 0 chr4 111482639 111482728 -44147392 + L1MD LINE L1 4797 4886 -1260 7 1435 439 306 34 13 chr4 111482728 111482877 -44147243 - B4 SINE B4 -136 156 5 7 1435 259 323 95 21 chr4 111482999 111483189 -44146931 + L1MC LINE L1 5026 5229 -917 7 1435 343 279 214 0 chr4 111483220 111483360 -44146760 + L1MD3 LINE L1 7465 7634 -361 7 1435 234 333 48 8 chr4 111483444 111483568 -44146552 + L1MD3 LINE L1 7684 7812 -183 7 1435 567 350 53 0 chr4 111483933 111484176 -44145944 - L1MEg1 LINE L1 -5884 351 96 7 1435 298 333 43 79 chr4 111484681 111484821 -44145299 - MIRb SINE MIR -81 187 53 7 1435 4612 65 8 10 chr4 111485254 111485870 -44144250 - L1_Mus2 LINE L1 0 6566 5952 7 1435 652 245 69 21 chr4 111486223 111486411 -44143709 + B3A SINE B2 2 198 0 7 1435 849 254 35 5 chr4 111487483 111487685 -44142435 - B3 SINE B2 -4 212 5 7 1435 22 0 0 0 chr4 111488794 111488816 -44141304 + AT_rich Low_complexity Low_complexity 1 22 0 7 1435 731 194 41 41 chr4 111488915 111489087 -44141033 + MTD LTR MaLR 3 174 -245 7 1435 511 192 90 16 chr4 111489071 111489193 -44140927 + MTD LTR MaLR 289 419 0 7 1435 1283 232 135 109 chr4 111489194 111489824 -44140296 + MTD-int LTR MaLR 2 647 -611 7 1435 211 212 0 0 chr4 111489912 111489945 -44140175 - ID4_ SINE ID -31 52 20 7 1435 24 53 0 0 chr4 111489982 111490020 -44140100 + AT_rich Low_complexity Low_complexity 1 38 0 7 1435 323 349 99 29 chr4 111490528 111490770 -44139350 - L1ME3A LINE L1 -60 6113 5855 7 1435 810 223 45 25 chr4 111491616 111491814 -44138306 - B3 SINE B2 -4 212 11 7 1435 288 0 0 0 chr4 111491900 111491932 -44138188 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1435 340 300 188 39 chr4 111492011 111492368 -44137752 - L1MEg LINE L1 -5328 2222 1813 7 1435 225 359 54 86 chr4 111493303 111493675 -44136445 - L1MEg LINE L1 -5974 478 119 7 1435 21 0 0 0 chr4 111493758 111493779 -44136341 + AT_rich Low_complexity Low_complexity 1 21 0 7 1435 544 178 125 0 chr4 111495037 111495189 -44134931 + Lx9 LINE L1 7466 7636 -8 7 1435 568 318 50 33 chr4 111495520 111495702 -44134418 - B3A SINE B2 -5 211 27 7 1435 6319 83 78 7 chr4 111495703 111496661 -44133459 - L1_Mus2 LINE L1 0 6654 5576 7 1435 11042 105 12 2 chr4 111496649 111498336 -44131784 - L1_Mm LINE L1 -2847 3036 1334 7 1435 820 306 25 39 chr4 111498423 111498705 -44131415 + B4A SINE B4 3 280 -12 7 1435 213 94 0 0 chr4 111498728 111498760 -44131360 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1435 21 104 0 0 chr4 111498838 111498915 -44131205 + AT_rich Low_complexity Low_complexity 1 77 0 7 1435 1717 259 70 28 chr4 111499461 111500000 -44130120 - Lx8 LINE L1 -360 7113 6552 7 1435 304 271 102 0 chr4 111500000 111500118 -44130002 - Lx8 LINE L1 -922 6551 6422 1 1435 27 0 0 0 chr4 111500389 111500416 -44129704 + AT_rich Low_complexity Low_complexity 1 27 0 2 1435 505 270 26 0 chr4 111500417 111500532 -44129588 - PB1D9 SINE Alu 0 120 3 3 1435 324 266 211 31 chr4 111500532 111500544 -44129576 - ID_B1 SINE B4 -1 222 73 4 1435 23 68 0 0 chr4 111501703 111501747 -44128373 + AT_rich Low_complexity Low_complexity 1 44 0 5 1435 336 48 0 0 chr4 111502425 111502467 -44127653 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1435 796 286 70 0 chr4 111502774 111502987 -44127133 + B4A SINE B4 1 228 -64 7 1435 3496 134 197 13 chr4 111502992 111503702 -44126418 - RLTR13D3 LTR ERVK 0 1114 226 8 1435 1207 43 43 0 chr4 111503702 111503843 -44126277 + B1_Mm SINE Alu 1 147 0 9 1435 3176 169 166 53 chr4 111503843 111504015 -44126105 - RLTR13D3 LTR ERVK -758 225 1 8 1435 232 297 62 0 chr4 111504015 111504075 -44126045 + B4A SINE B4 229 292 0 7 1435 779 257 0 0 chr4 111504174 111504322 -44125798 + B1F2 SINE Alu 2 149 0 1 1435 228 196 0 0 chr4 111504714 111504765 -44125355 - Lx2 LINE L1 0 6997 6947 1 1435 412 143 24 61 chr4 111504815 111504897 -44125223 + PB1D7 SINE Alu 41 119 -1 1 1435 472 256 205 43 chr4 111505331 111505383 -44124737 - L1MB5 LINE L1 -157 6017 5966 1 1435 360 0 0 0 chr4 111505383 111505423 -44124697 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1435 472 256 205 43 chr4 111505423 111505717 -44124403 - L1MB5 LINE L1 -209 5965 5616 1 1435 1537 202 119 13 chr4 111505965 111506351 -44123769 - RMER4B LTR ERVK -137 448 22 1 1435 2952 12 95 6 chr4 111506443 111506780 -44123340 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1435 28243 20 18 1 chr4 111506780 111509998 -44120122 - IAPEz-int LTR ERVK 0 6481 3209 1 1435 7333 93 116 29 chr4 111509996 111511198 -44118922 - IAPEz-int LTR ERVK -5168 1313 8 1 1435 2952 12 95 6 chr4 111511198 111511535 -44118585 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1435 388 298 70 32 chr4 111511556 111511772 -44118348 + L1MA9 LINE L1 3736 3971 -1909 1 1435 977 266 211 32 chr4 111512131 111513057 -44117063 + L1MA9 LINE L1 4041 5131 -1009 1 1435 312 212 118 62 chr4 111513073 111513257 -44116863 + L1MA9 LINE L1 5569 5763 -537 1 1435 218 212 71 0 chr4 111513349 111513462 -44116658 + (TA)n Simple_repeat Simple_repeat 1 121 0 1 1435 571 201 274 13 chr4 111513478 111513785 -44116335 + L1MA9 LINE L1 5799 6185 -127 1 1435 252 0 0 0 chr4 111514452 111514480 -44115640 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1435 1959 226 30 2 chr4 111514847 111515286 -44114834 + L1_Mur3 LINE L1 34 484 -7244 2 1435 358 323 23 23 chr4 111515296 111515426 -44114694 - RMER10B LTR ERVL 0 398 269 2 1435 8587 159 111 30 chr4 111515679 111518286 -44111834 + L1_Mur3 LINE L1 506 3321 -2559 2 1435 223 65 85 21 chr4 111518300 111518347 -44111773 + T-rich Low_complexity Low_complexity 2 51 0 2 1435 3483 243 83 21 chr4 111518434 111519337 -44110783 - Lx6 LINE L1 -449 7011 6053 2 1435 3787 199 125 28 chr4 111520072 111520894 -44109226 - RMER19B LTR ERVK 0 902 1 2 1435 192 158 0 0 chr4 111521304 111521342 -44108778 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1435 534 210 22 53 chr4 111521408 111521546 -44108574 - MT2A LTR ERVL -46 555 347 2 1435 583 192 18 12 chr4 111521547 111521716 -44108404 + (TA)n Simple_repeat Simple_repeat 2 171 0 2 1435 2523 170 26 37 chr4 111521771 111521823 -44108297 + RMER19B LTR ERVK 28 70 -832 2 1435 2599 181 57 60 chr4 111521823 111522405 -44107715 + RLTR31A_Mm LTR ERVK 5 584 0 2 1435 2523 170 26 37 chr4 111522405 111522816 -44107304 + RMER19B LTR ERVK 71 486 -416 2 1435 9157 8 0 0 chr4 111522821 111524089 -44106031 - L1Md_T LINE L1 0 6582 5315 3 1435 2439 119 63 5 chr4 111524089 111524469 -44105651 + RMER19B LTR ERVK 501 902 0 2 1435 901 159 0 7 chr4 111524471 111524617 -44105503 - MT2A LTR ERVL -388 145 1 2 1435 207 186 0 44 chr4 111524797 111524842 -44105278 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 3 1435 277 295 194 29 chr4 111524873 111525079 -44105041 + MIR SINE MIR 2 241 -21 3 1435 363 182 0 0 chr4 111525096 111525173 -44104947 + (CACCAT)n Simple_repeat Simple_repeat 4 80 0 3 1435 214 184 0 0 chr4 111525342 111525380 -44104740 + A-rich Low_complexity Low_complexity 2 39 0 3 1435 234 0 0 0 chr4 111525567 111525593 -44104527 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1435 531 272 14 14 chr4 111525812 111525950 -44104170 - MTEa LTR MaLR -13 366 229 3 1435 468 260 100 55 chr4 111526101 111526321 -44103799 + Lx8 LINE L1 7240 7469 -4 3 1435 36635 40 6 3 chr4 111528369 111533591 -44096529 + L1Md_T LINE L1 259 5589 -297 3 1435 8994 35 0 0 chr4 111533591 111534587 -44095533 + L1Md_T LINE L1 5590 6585 0 3 1435 189 78 50 100 chr4 111534717 111534817 -44095303 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 3 1435 748 239 95 17 chr4 111534981 111535160 -44094960 - RMER15 LTR ERVL -5 570 378 4 1435 394 179 0 0 chr4 111535163 111535230 -44094890 + RMER12B LTR ERVK 1 67 -1337 4 1435 2894 119 70 16 chr4 111535204 111535715 -44094405 + RMER12B LTR ERVK 241 779 -625 4 1435 1562 142 78 31 chr4 111535703 111535958 -44094162 + RMER12B LTR ERVK 926 1202 -202 4 1435 279 79 0 0 chr4 111535958 111535996 -44094124 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1435 1562 224 86 35 chr4 111535996 111536352 -44093768 + RMER12B LTR ERVK 731 1306 -266 4 1435 277 264 43 50 chr4 111536342 111536436 -44093684 + RMER12B LTR ERVK 1344 1404 0 4 1435 740 235 165 44 chr4 111536436 111536684 -44093436 - RMER15 LTR ERVL -209 366 89 4 1435 1252 159 56 5 chr4 111536713 111536928 -44093192 - URR1A DNA MER1_type 0 226 1 4 1435 925 342 84 27 chr4 111537105 111537519 -44092601 - MT2A LTR ERVL -2 531 94 4 1435 250 206 0 0 chr4 111537546 111537598 -44092522 + L1M4 LINE L1 2945 3027 -3119 4 1435 2072 186 18 39 chr4 111537613 111538049 -44092071 - Lx2B LINE L1 -23 6977 6551 4 1435 242 170 93 19 chr4 111538264 111538318 -44091802 - Lx2B LINE L1 -457 6543 6486 4 1435 2244 148 14 14 chr4 111538310 111538679 -44091441 - L1_Mur1 LINE L1 -16 5870 5502 4 1435 317 234 43 7 chr4 111538695 111538833 -44091287 + L1M2 LINE L1 3040 3182 -2961 4 1435 4733 151 83 10 chr4 111540427 111541256 -44088864 + RMER19B LTR ERVK 1 890 -12 4 1436 229 368 144 26 chr4 111542560 111542789 -44087331 - LTR16A LTR ERVL -27 424 169 5 1436 863 250 29 24 chr4 111542936 111543141 -44086979 - B3 SINE B2 -9 207 2 5 1436 23 33 0 0 chr4 111543756 111543786 -44086334 + AT_rich Low_complexity Low_complexity 1 30 0 5 1436 422 300 76 6 chr4 111544015 111544220 -44085900 - L1MB1 LINE L1 -232 5957 5733 5 1436 182 312 15 15 chr4 111545734 111545799 -44084321 + L3 LINE CR1 797 861 -3628 5 1436 225 0 0 0 chr4 111546395 111546420 -44083700 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1436 561 68 0 0 chr4 111547218 111547292 -44082828 + (TCC)n Simple_repeat Simple_repeat 3 76 0 5 1436 1241 50 0 0 chr4 111547292 111547432 -44082688 - B1_Mm SINE Alu -7 140 1 5 1436 184 315 174 32 chr4 111547469 111547659 -44082461 - L2c LINE L2 -186 3201 2985 5 1436 450 120 0 0 chr4 111547702 111547777 -44082343 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1436 222 143 0 0 chr4 111547786 111547835 -44082285 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1436 242 306 18 18 chr4 111550367 111550468 -44079652 + GA-rich Low_complexity Low_complexity 1 101 0 6 1436 558 0 0 0 chr4 111553817 111553879 -44076241 + (GGAGA)n Simple_repeat Simple_repeat 1 62 0 6 1436 620 87 0 11 chr4 111553995 111554088 -44076032 + (TTTTC)n Simple_repeat Simple_repeat 4 95 0 6 1436 597 94 0 0 chr4 111554068 111554153 -44075967 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 1436 1040 147 183 0 chr4 111554574 111554765 -44075355 - URR1A DNA MER1_type 0 226 1 6 1436 266 353 64 39 chr4 111554901 111555134 -44074986 - L2 LINE L2 -1324 2095 1857 6 1436 661 312 52 24 chr4 111555523 111555863 -44074257 + MLT1B LTR MaLR 19 390 0 6 1436 468 0 0 0 chr4 111555956 111556008 -44074112 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 6 1436 203 266 47 71 chr4 111556156 111556241 -44073879 + L2c LINE L2 3302 3384 -3 6 1436 227 328 39 108 chr4 111557576 111557706 -44072414 - RLTR44D LTR ERVK -31 455 335 7 1436 1372 170 13 9 chr4 111559643 111559868 -44070252 + URR1A DNA MER1_type 1 226 0 7 1436 229 175 0 81 chr4 111560801 111560813 -44069307 + polypyrimidine Low_complexity Low_complexity 49 60 0 7 1436 1266 90 0 0 chr4 111560813 111560991 -44069129 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 7 1436 801 31 0 0 chr4 111560991 111561087 -44069033 + (TCCCC)n Simple_repeat Simple_repeat 5 100 0 7 1436 229 175 0 81 chr4 111561087 111561135 -44068985 + polypyrimidine Low_complexity Low_complexity 5 48 0 7 1436 334 341 85 52 chr4 111561595 111561923 -44068197 + L2 LINE L2 2545 2883 -536 7 1436 459 0 0 0 chr4 111562305 111562356 -44067764 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1436 641 13 13 0 chr4 111565131 111565209 -44064911 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1436 668 12 12 0 chr4 111565209 111565289 -44064831 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1436 237 269 0 0 chr4 111565663 111565715 -44064405 + CT-rich Low_complexity Low_complexity 1 52 0 8 1436 183 162 0 0 chr4 111566702 111566739 -44063381 + (TGAG)n Simple_repeat Simple_repeat 4 40 0 8 1436 429 299 72 85 chr4 111569927 111570220 -44059900 + ORR1E LTR MaLR 71 359 0 8 1436 226 290 0 28 chr4 111570703 111570774 -44059346 + LTR65 LTR ERV1 327 395 -274 8 1436 567 0 0 0 chr4 111571028 111571091 -44059029 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 1436 226 286 239 12 chr4 111573455 111573618 -44056502 + LTR78 LTR ERV1 1090 1289 -15 8 1436 369 0 0 0 chr4 111574469 111574510 -44055610 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 1436 271 314 33 0 chr4 111575697 111575818 -44054302 + L1MA9 LINE L1 6031 6155 -157 8 1436 2554 225 86 30 chr4 111575930 111576558 -44053562 - RMER1C Other Other 0 1342 680 8 1436 1111 222 125 24 chr4 111576820 111577166 -44052954 - RMER1B Other Other -175 891 551 8 1436 1882 182 60 20 chr4 111577724 111578077 -44052043 + ORR1B2 LTR MaLR 1 367 0 8 1436 2171 287 102 35 chr4 111578202 111579267 -44050853 + Lx9 LINE L1 6454 7466 -7 9 1436 273 289 34 26 chr4 111579808 111579925 -44050195 + CT-rich Low_complexity Low_complexity 2 119 0 9 1436 256 373 82 7 chr4 111580886 111581021 -44049099 + MER3 DNA MER1_type 2 146 -63 9 1436 481 221 136 0 chr4 111582051 111582205 -44047915 - L1_Mur3 LINE L1 -2118 3762 3588 9 1436 4074 223 42 28 chr4 111582202 111583890 -44046230 + Lx7 LINE L1 4888 6605 -1091 9 1436 540 0 0 0 chr4 111584186 111584246 -44045874 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1436 1713 268 124 33 chr4 111584268 111584935 -44045185 + Lx9 LINE L1 6367 7094 -550 9 1436 22 0 0 0 chr4 111584935 111584957 -44045163 + AT_rich Low_complexity Low_complexity 1 22 0 9 1436 27724 99 17 16 chr4 111584957 111590212 -44039908 - Lx3A LINE L1 0 6981 1723 9 1436 528 309 35 20 chr4 111590280 111590556 -44039564 - L1_Mur3 LINE L1 -796 5504 5183 9 1436 2314 231 78 10 chr4 111590775 111591365 -44038755 + Lx7 LINE L1 6786 7415 -281 9 1436 401 246 79 0 chr4 111591443 111591569 -44038551 + Lx7 LINE L1 7559 7694 -2 9 1436 394 372 72 27 chr4 111592633 111593075 -44037045 - L1ME1 LINE L1 -1 6178 5717 1 1436 1248 91 0 0 chr4 111593127 111593303 -44036817 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 1 1436 813 73 0 0 chr4 111593303 111593411 -44036709 + (TCCCC)n Simple_repeat Simple_repeat 2 110 0 1 1436 323 121 17 0 chr4 111593411 111593469 -44036651 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 1 1436 1626 146 70 15 chr4 111593578 111593690 -44036430 - Lx3B LINE L1 -3 6970 6842 1 1436 222 37 0 0 chr4 111593690 111593717 -44036403 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1436 1626 146 70 15 chr4 111593717 111593876 -44036244 - Lx3B LINE L1 -132 6841 6684 1 1436 2919 172 19 2 chr4 111593876 111594393 -44035727 + Lx3B LINE L1 6152 6677 -296 1 1436 2696 63 3 18 chr4 111594412 111594751 -44035369 + L1Md_F2 LINE L1 6248 6581 -1 1 1436 588 29 0 0 chr4 111595479 111595549 -44034571 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 1436 363 370 106 11 chr4 111595607 111596223 -44033897 - Lx8 LINE L1 -59 7414 6741 1 1436 6480 72 2 31 chr4 111596313 111596862 -44033258 - L1_Mus2 LINE L1 0 6566 6029 1 1436 6647 51 36 0 chr4 111596862 111597642 -44032478 - RLTR13C2 LTR ERVK 0 808 1 1 1436 6480 72 2 31 chr4 111597642 111597846 -44032274 - L1_Mus2 LINE L1 -538 6028 5836 1 1436 5042 53 5 0 chr4 111597846 111598430 -44031690 - LTRIS_Mus LTR ERV1 0 587 1 1 1436 6480 72 2 31 chr4 111598430 111598517 -44031603 - L1_Mus2 LINE L1 -731 5835 5749 1 1436 3410 92 0 0 chr4 111598517 111598961 -44031159 + L1_Mus2 LINE L1 5302 5745 -138 1 1436 2814 204 11 22 chr4 111598961 111599498 -44030622 - RLTR20D LTR ERVK -37 531 1 1 1436 844 341 49 7 chr4 111600040 111600445 -44029675 - Lx8 LINE L1 -237 7236 6815 1 1436 288 294 137 0 chr4 111600726 111600828 -44029292 - L1M4c LINE L1 -6234 150 35 1 1436 34 24 0 0 chr4 111601508 111601549 -44028571 + AT_rich Low_complexity Low_complexity 1 41 0 1 1436 250 215 12 25 chr4 111601634 111601715 -44028405 - Lx9 LINE L1 0 7644 7565 1 1436 886 243 13 157 chr4 111601717 111602239 -44027881 - L1_Rod LINE L1 -257 5590 5144 1 1436 324 147 0 0 chr4 111602239 111602314 -44027806 + (T)n Simple_repeat Simple_repeat 1 75 0 1 1436 38781 30 0 1 chr4 111602317 111608900 -44021220 - L1Md_T LINE L1 0 6585 1 1 1436 1188 210 64 19 chr4 111608900 111609211 -44020909 - L1_Rod LINE L1 -686 5161 4837 1 1436 868 44 212 0 chr4 111609809 111609922 -44020198 + B1_Mus2 SINE Alu 2 138 -9 1 1436 241 26 26 26 chr4 111609922 111609961 -44020159 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1436 201 178 26 52 chr4 111610135 111610212 -44019908 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 1 1436 446 273 33 80 chr4 111610254 111610405 -44019715 - RSINE1 SINE B4 -1 164 21 1 1436 586 245 13 53 chr4 111610446 111610597 -44019523 - B1F2 SINE Alu -1 148 4 1 1436 351 0 0 0 chr4 111611176 111611215 -44018905 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 1 1436 22 0 0 0 chr4 111612766 111612788 -44017332 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 339 25 0 0 chr4 111612907 111612947 -44017173 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 1 1436 225 0 0 0 chr4 111613584 111613609 -44016511 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1436 965 309 43 9 chr4 111613615 111614059 -44016061 - L1M3 LINE L1 -946 5194 4736 1 1436 393 262 0 0 chr4 111614067 111614151 -44015969 + BC1_Mm scRNA scRNA 1 84 -68 1 1436 22 0 0 0 chr4 111614275 111614297 -44015823 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 12316 131 18 7 chr4 111614305 111617501 -44012619 - Lx3B LINE L1 -4 6969 3743 1 1436 1715 106 51 7 chr4 111617501 111617776 -44012344 + BGLII LTR ERVK 1 287 -134 1 1436 3349 75 5 5 chr4 111617802 111618244 -44011876 - L1Md_F2 LINE L1 -14 6568 6127 1 1436 2772 64 13 5 chr4 111618244 111618637 -44011483 + L1_Mm LINE L1 4616 5011 -872 1 1436 1096 126 20 59 chr4 111618637 111618839 -44011281 + BGLII LTR ERVK 228 421 0 1 1436 13284 141 43 15 chr4 111618839 111622079 -44008041 - Lx3B LINE L1 -2138 3748 69 1 1436 719 281 14 33 chr4 111622237 111622513 -44007607 - Lx9 LINE L1 -177 7467 7197 1 1436 1143 251 37 27 chr4 111622780 111623185 -44006935 + Lx9 LINE L1 7212 7620 -24 1 1436 369 0 0 0 chr4 111625674 111625715 -44004405 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1436 225 314 33 0 chr4 111626907 111627028 -44003092 + L1MA9 LINE L1 6026 6150 -162 1 1436 1961 248 89 44 chr4 111627145 111627783 -44002337 - RMER1C Other Other 0 1342 676 1 1436 928 223 123 34 chr4 111628060 111628356 -44001764 - RMER1B Other Other -175 891 593 1 1436 1194 55 0 7 chr4 111628746 111628894 -44001226 - B1_Mm SINE Alu 0 147 1 1 1436 1720 187 57 20 chr4 111629118 111629472 -44000648 + ORR1B2 LTR MaLR 1 367 0 1 1436 1745 299 129 34 chr4 111629608 111630669 -43999451 + Lx9 LINE L1 6464 7625 -19 1 1436 229 200 13 26 chr4 111631241 111631318 -43998802 + CT-rich Low_complexity Low_complexity 2 77 0 1 1436 3330 35 5 0 chr4 111631876 111632270 -43997850 - MTA_Mm LTR MaLR 0 396 1 1 1436 9376 26 3 0 chr4 111632270 111633363 -43996757 - MTA_Mm-int LTR MaLR 0 1098 3 1 1436 4362 22 0 0 chr4 111633367 111633860 -43996260 - MT2_Mm LTR ERVL 0 493 1 1 1436 438 213 129 0 chr4 111635512 111635667 -43994453 - L1_Mur3 LINE L1 -2118 3762 3588 1 1436 928 207 5 0 chr4 111635659 111635862 -43994258 + Lx7 LINE L1 4883 5086 -794 1 1436 4487 92 39 2 chr4 111635862 111636501 -43993619 - RLTR13D6 LTR ERVK -239 663 1 1 1436 2878 232 216 11 chr4 111636501 111637009 -43993111 + Lx7 LINE L1 5134 5740 -1956 1 1436 1392 89 5 0 chr4 111637009 111637200 -43992920 + B2_Mm1t SINE B2 2 193 0 1 1436 2878 236 79 63 chr4 111637200 111638054 -43992066 + Lx7 LINE L1 5741 6610 -1086 1 1436 1781 252 107 39 chr4 111639100 111639513 -43990607 - L1_Rod LINE L1 -70 5777 5333 1 1436 3416 150 21 0 chr4 111639513 111640073 -43990047 + Lx2 LINE L1 6426 6997 0 1 1436 1781 252 107 39 chr4 111640073 111640456 -43989664 - L1_Rod LINE L1 -515 5332 4927 1 1436 644 206 151 16 chr4 111640443 111640635 -43989485 + Lx9 LINE L1 5756 5973 -1671 1 1436 610 275 27 12 chr4 111641339 111641624 -43988496 - L1MD LINE L1 -794 5503 5215 1 1436 1890 245 89 12 chr4 111641840 111642415 -43987705 + Lx7 LINE L1 6786 7404 -292 1 1436 5320 109 67 60 chr4 111642507 111642951 -43987169 + Lx3A LINE L1 4873 5274 -612 1 1436 486 49 0 0 chr4 111642951 111643012 -43987108 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1436 7462 125 68 24 chr4 111643012 111644645 -43985475 + Lx3A LINE L1 5275 6974 -7 1 1436 206 79 53 0 chr4 111644649 111644687 -43985433 + (TAAAAA)n Simple_repeat Simple_repeat 4 43 0 1 1436 949 112 25 0 chr4 111644687 111644848 -43985272 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 1 1436 342 214 12 0 chr4 111644861 111644945 -43985175 + Lx7 LINE L1 7612 7696 0 1 1436 1245 70 0 0 chr4 111644996 111645168 -43984952 - L1Md_F3 LINE L1 -16 6568 6397 1 1436 323 376 81 38 chr4 111646167 111646610 -43983510 - L1ME1 LINE L1 -1 6178 5717 1 1436 1610 172 25 0 chr4 111646794 111647073 -43983047 - Lx3B LINE L1 -3 6970 6685 1 1436 2806 124 68 18 chr4 111647074 111647575 -43982545 + Lx3B LINE L1 6152 6677 -296 1 1436 211 136 23 0 chr4 111647575 111647619 -43982501 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 1 1436 564 15 0 0 chr4 111648349 111648414 -43981706 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1436 405 345 34 21 chr4 111648773 111649099 -43981021 - Lx8 LINE L1 -391 7082 6753 1 1436 3033 181 46 4 chr4 111649110 111649190 -43980930 - RLTR20D LTR ERVK 0 568 479 1 1436 750 11 0 0 chr4 111649190 111649277 -43980843 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1436 3033 181 46 4 chr4 111649277 111649741 -43980379 - RLTR20D LTR ERVK -90 478 1 1 1436 622 347 68 5 chr4 111650275 111650672 -43979448 - Lx8 LINE L1 -237 7236 6815 1 1436 362 253 33 0 chr4 111650989 111651080 -43979040 - L1M4c LINE L1 -6260 124 31 1 1436 5947 22 0 0 chr4 111651152 111651874 -43978246 - L1Md_T LINE L1 0 5883 5162 1 1436 5880 21 1 0 chr4 111651874 111652544 -43977576 + L1Md_T LINE L1 5912 6582 0 1 1436 34 24 0 0 chr4 111653176 111653217 -43976903 + AT_rich Low_complexity Low_complexity 1 41 0 1 1436 238 279 0 0 chr4 111653312 111653391 -43976729 - Lx9 LINE L1 -6 7638 7560 1 1436 1896 217 56 91 chr4 111653388 111653810 -43976310 - L1_Rod LINE L1 -258 5589 5217 1 1436 716 11 23 0 chr4 111653810 111653898 -43976222 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1 1436 1896 217 56 91 chr4 111653898 111654259 -43975861 - L1_Rod LINE L1 -631 5216 4833 1 1436 222 105 0 0 chr4 111654433 111654471 -43975649 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 1 1436 214 209 43 32 chr4 111655082 111655176 -43974944 + (TTTA)n Simple_repeat Simple_repeat 1 95 0 1 1436 399 41 0 0 chr4 111655227 111655276 -43974844 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1436 523 300 28 21 chr4 111655279 111655422 -43974698 - RSINE1 SINE B4 -2 163 20 1 1436 487 259 22 29 chr4 111655473 111655612 -43974508 - B1F2 SINE Alu -8 141 4 1 1436 468 51 0 0 chr4 111655637 111655696 -43974424 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 1436 351 0 0 0 chr4 111656058 111656097 -43974023 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1436 951 57 0 0 chr4 111656283 111656405 -43973715 + (TC)n Simple_repeat Simple_repeat 2 123 0 1 1436 378 0 0 0 chr4 111656415 111656457 -43973663 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1436 24 0 0 0 chr4 111657083 111657107 -43973013 + AT_rich Low_complexity Low_complexity 1 24 0 1 1436 237 211 0 0 chr4 111658663 111658715 -43971405 - L1M5 LINE L1 -552 5627 5576 1 1436 180 0 0 0 chr4 111658794 111658814 -43971306 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1436 495 0 0 0 chr4 111658814 111658868 -43971252 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1436 979 113 7 0 chr4 111658873 111659023 -43971097 + L1_Mus2 LINE L1 6416 6566 0 1 1436 742 293 12 8 chr4 111659286 111659534 -43970586 - L1M3 LINE L1 -1142 4998 4750 1 1436 1123 95 0 0 chr4 111659556 111659703 -43970417 - B1_Mm SINE Alu 0 147 1 1 1436 664 327 53 14 chr4 111659818 111660231 -43969889 - Lx9 LINE L1 -19 7625 7197 1 1436 1144 82 0 0 chr4 111660335 111660482 -43969638 + B1_Mus2 SINE Alu 1 147 0 1 1436 628 252 70 4 chr4 111660659 111660886 -43969234 + Lx9 LINE L1 7223 7464 -180 1 1436 465 28 42 0 chr4 111660890 111660961 -43969159 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1436 281 283 25 0 chr4 111660965 111661085 -43969035 + Lx9 LINE L1 7513 7635 -9 1 1436 836 45 8 0 chr4 111661184 111661318 -43968802 - MusHAL1 LINE L1 -1 2711 2577 1 1436 1622 95 4 8 chr4 111661318 111661563 -43968557 - 7SK RNA RNA -86 245 2 1 1436 7171 69 4 7 chr4 111661563 111662665 -43967455 + L1_Mus1 LINE L1 5455 6552 -15 1 1436 450 0 0 0 chr4 111662668 111662718 -43967402 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1436 240 143 0 0 chr4 111662720 111662762 -43967358 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1436 4821 67 2 0 chr4 111662801 111663410 -43966710 - L1_Mus1 LINE L1 0 6567 5958 2 1436 1432 88 0 0 chr4 111663410 111663615 -43966505 - MusHAL1 LINE L1 -144 2568 2364 1 1436 1179 107 0 0 chr4 111663627 111663796 -43966324 + L1_Mus4 LINE L1 6321 6489 -147 2 1436 2997 84 20 2 chr4 111663799 111664288 -43965832 - MusHAL1 LINE L1 -355 2357 1860 1 1436 5656 101 14 19 chr4 111664293 111665145 -43964975 - L1_Mus4 LINE L1 -6 6630 5783 2 1436 7198 44 12 6 chr4 111665162 111666273 -43963847 - L1Md_F2 LINE L1 -19 6563 5444 2 1436 24360 170 12 5 chr4 111666265 111671450 -43958670 - L1VL4 LINE L1 -96 5787 562 2 1436 1564 205 6 60 chr4 111671451 111671633 -43958487 - Lx2B LINE L1 -486 6514 6338 2 1436 4906 83 123 1 chr4 111671633 111672354 -43957766 + L1_Mus3 LINE L1 5827 6635 -3 2 1436 1564 205 6 60 chr4 111672354 111672519 -43957601 - Lx2B LINE L1 -663 6337 6186 2 1436 386 38 0 19 chr4 111672525 111672578 -43957542 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 2 1436 2164 174 8 0 chr4 111672588 111672955 -43957165 + L1_Mm LINE L1 5313 5682 -201 2 1436 1805 172 30 12 chr4 111672961 111673290 -43956830 - Lx4A LINE L1 -671 6387 6053 2 179 1444 150 8 0 chr4 111673296 111673536 -43956584 + Lx4A LINE L1 5798 6039 -1019 2 1437 722 238 57 26 chr4 111673975 111674169 -43955951 - ORR1D1 LTR MaLR -11 363 164 2 1437 371 377 26 16 chr4 111674171 111674365 -43955755 + MER2B DNA MER2_type 140 335 -1 2 1437 608 312 19 6 chr4 111674501 111674662 -43955458 + RSINE1 SINE B4 2 164 -1 2 1437 237 65 0 0 chr4 111674662 111674693 -43955427 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2 1437 1003 203 57 10 chr4 111674717 111674926 -43955194 + URR1A DNA MER1_type 8 226 0 2 1437 229 276 130 30 chr4 111675518 111675649 -43954471 + MTE-int LTR MaLR 25 168 -1412 2 1437 5378 77 3 35 chr4 111675700 111676481 -43953639 + L1_Mur1 LINE L1 5002 5757 -129 2 1437 1173 65 0 0 chr4 111676473 111676626 -43953494 - L1Md_A LINE L1 -506 6076 5924 2 1437 3888 46 0 6 chr4 111676627 111677105 -43953015 + L1Md_T LINE L1 6098 6572 -10 2 1437 7406 129 28 21 chr4 111677105 111678320 -43951800 + Lx3B LINE L1 5747 6970 -3 2 1437 22 70 0 0 chr4 111679196 111679239 -43950881 + AT_rich Low_complexity Low_complexity 1 43 0 2 1437 526 354 5 0 chr4 111679404 111679596 -43950524 + Lx8 LINE L1 7114 7306 -167 2 1437 192 77 0 0 chr4 111679619 111679645 -43950475 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1437 334 211 41 0 chr4 111679792 111679890 -43950230 - L1MB3 LINE L1 -25 6146 6057 2 1437 331 321 68 68 chr4 111680457 111680574 -43949546 - B3A SINE B2 0 198 82 2 1437 2052 290 78 22 chr4 111681171 111681859 -43948261 + MTE-int LTR MaLR 826 1552 -28 2 1437 782 326 76 46 chr4 111681863 111682218 -43947902 - MTE2b LTR MaLR -11 348 1 2 1437 503 284 74 98 chr4 111682220 111682435 -43947685 + ORR1E LTR MaLR 26 235 -135 2 1437 294 95 0 0 chr4 111682966 111683008 -43947112 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1437 1154 62 0 0 chr4 111683008 111683153 -43946967 - B1_Mm SINE Alu 0 147 3 2 1437 926 260 207 0 chr4 111683471 111683775 -43946345 - ORR1D1 LTR MaLR 0 374 8 2 1437 4244 198 25 12 chr4 111684058 111684895 -43945225 - RMER13A LTR ERVK -12 848 1 2 1437 2706 185 54 0 chr4 111685140 111685380 -43944740 + RLTR12A LTR ERVK 5 245 -323 2 1437 668 35 11 0 chr4 111685380 111685467 -43944653 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1437 2706 185 54 0 chr4 111685467 111685676 -43944444 + RLTR12A LTR ERVK 246 479 -89 2 1437 285 29 0 0 chr4 111685676 111685710 -43944410 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1437 2706 185 54 0 chr4 111685710 111685794 -43944326 + RLTR12A LTR ERVK 480 566 -2 2 1437 7090 70 10 2 chr4 111686074 111686991 -43943129 - L1_Mus1 LINE L1 -14 6553 5630 2 1437 23 33 0 0 chr4 111687174 111687204 -43942916 + AT_rich Low_complexity Low_complexity 1 30 0 2 1437 244 262 36 0 chr4 111687433 111687517 -43942603 - L1MC3 LINE L1 -92 7693 7607 2 1437 356 181 56 19 chr4 111687704 111687811 -43942309 - Lx9 LINE L1 -15 7629 7519 2 1437 288 0 0 0 chr4 111687820 111687852 -43942268 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1437 980 284 50 26 chr4 111687857 111688197 -43941923 - Lx9 LINE L1 -174 7470 7123 2 1437 241 151 0 36 chr4 111688213 111688268 -43941852 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2 1437 400 294 68 2 chr4 111688306 111688469 -43941651 - Lx9 LINE L1 -641 7003 6746 2 1437 2376 256 34 37 chr4 111688472 111689227 -43940893 + L1_Rod LINE L1 5092 5844 -3 2 1437 855 34 25 0 chr4 111689395 111689514 -43940606 + (TCTA)n Simple_repeat Simple_repeat 1 122 0 2 1437 23 43 0 21 chr4 111689514 111689528 -43940592 + AT_rich Low_complexity Low_complexity 1 14 0 2 1437 7188 154 22 3 chr4 111689528 111690697 -43939423 - Lx4A LINE L1 -2 7056 5865 2 1437 23 43 0 21 chr4 111690697 111690730 -43939390 + AT_rich Low_complexity Low_complexity 1 33 0 2 1437 429 206 0 0 chr4 111691370 111691462 -43938658 + GA-rich Low_complexity Low_complexity 6 97 0 2 1437 265 260 0 50 chr4 111692556 111692665 -43937455 + B1_Mur4 SINE Alu 1 99 -21 2 1437 483 18 0 0 chr4 111692665 111692721 -43937399 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1437 603 126 0 0 chr4 111692717 111692812 -43937308 + (GGA)n Simple_repeat Simple_repeat 2 96 0 2 1437 227 229 21 0 chr4 111692827 111692875 -43937245 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2 1437 396 0 0 0 chr4 111693003 111693047 -43937073 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1437 21 57 0 0 chr4 111693518 111693553 -43936567 + AT_rich Low_complexity Low_complexity 1 35 0 2 1437 1918 305 78 25 chr4 111694390 111695235 -43934885 - Lx8 LINE L1 -8 7465 6576 2 1437 21 100 0 0 chr4 111696556 111696626 -43933494 + AT_rich Low_complexity Low_complexity 1 70 0 2 1437 204 351 27 7 chr4 111696932 111697081 -43933039 + (CATA)n Simple_repeat Simple_repeat 3 154 0 2 1437 209 283 21 21 chr4 111696981 111697075 -43933045 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 1437 201 162 0 0 chr4 111697200 111697237 -43932883 + T-rich Low_complexity Low_complexity 2 38 0 2 1437 1351 136 0 84 chr4 111697248 111697497 -43932623 - Lx3A LINE L1 -3 6978 6751 2 1437 683 269 13 0 chr4 111697503 111697652 -43932468 + ID_B1 SINE B4 12 162 -62 2 1437 874 128 14 28 chr4 111698469 111698603 -43931517 + B1_Mus1 SINE Alu 2 137 -11 2 1437 344 40 0 20 chr4 111698603 111698654 -43931466 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 1437 269 77 0 71 chr4 111698705 111698775 -43931345 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 2 1437 277 22 21 43 chr4 111699017 111699064 -43931056 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 2 1437 290 131 16 0 chr4 111699064 111699125 -43930995 + Lx5 LINE L1 6986 7047 -3 2 1437 604 344 27 0 chr4 111699506 111699689 -43930431 - ID_B1 SINE B4 -25 199 12 2 1437 782 252 77 0 chr4 111699718 111699940 -43930180 - Lx9 LINE L1 -686 6958 6720 2 1437 432 97 0 0 chr4 111699949 111700011 -43930109 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1437 269 193 25 92 chr4 111700024 111700144 -43929976 + Lx9 LINE L1 7533 7644 0 2 1437 795 84 147 0 chr4 111700248 111700391 -43929729 + Lx3_Mus LINE L1 6838 7001 -8 2 1437 1610 287 23 0 chr4 111701870 111702378 -43927742 + Lx5 LINE L1 6455 6885 -575 2 1437 7315 94 4 9 chr4 111702398 111703687 -43926433 - L1_Mus2 LINE L1 0 6566 5287 2 1437 14991 122 47 23 chr4 111703711 111707328 -43922792 - L1Md_F2 LINE L1 -19 6563 2856 2 1437 34253 86 13 7 chr4 111707299 111713428 -43916692 - L1Md_F2 LINE L1 0 6582 418 2 1437 10307 171 24 22 chr4 111713423 111716126 -43913994 - L1Md_F2 LINE L1 -2960 2923 316 2 1437 336 313 16 37 chr4 111716126 111716315 -43913805 + Lx6 LINE L1 7231 7415 -45 2 1437 24 32 0 0 chr4 111716315 111716346 -43913774 + AT_rich Low_complexity Low_complexity 1 31 0 2 1437 1360 81 0 5 chr4 111716350 111716536 -43913584 - Lx3A LINE L1 -1081 5900 5716 2 1437 6081 112 46 45 chr4 111716535 111717579 -43912541 + Lx3_Mus LINE L1 5959 7003 -6 2 1437 1324 88 78 0 chr4 111718529 111718722 -43911398 - L1_Mus1 LINE L1 0 6567 6360 2 1437 1011 56 0 0 chr4 111718928 111719054 -43911066 - L1_Mus1 LINE L1 -209 6358 6233 2 1437 27 62 0 0 chr4 111719807 111719855 -43910265 + AT_rich Low_complexity Low_complexity 1 48 0 2 1437 573 15 0 0 chr4 111719896 111719962 -43910158 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 2 1437 519 182 24 0 chr4 111720110 111720236 -43909884 + CT-rich Low_complexity Low_complexity 2 130 0 2 1437 17171 114 18 16 chr4 111720623 111723794 -43906326 + L1_Mus1 LINE L1 2117 5292 -591 2 1437 1957 38 4 0 chr4 111723794 111724033 -43906087 + L1Md_T LINE L1 6343 6582 0 2 1437 15219 109 49 14 chr4 111724033 111725366 -43904754 + L1_Mus1 LINE L1 5277 6569 -15 2 1437 702 321 26 10 chr4 111725404 111725712 -43904408 + Lx7 LINE L1 5592 5904 -1792 2 1437 64 75 0 0 chr4 111726094 111726228 -43903892 + AT_rich Low_complexity Low_complexity 1 134 0 2 1437 535 202 342 0 chr4 111726229 111726387 -43903733 - B3 SINE B2 -4 212 1 2 1437 31 44 0 0 chr4 111726549 111726594 -43903526 + AT_rich Low_complexity Low_complexity 1 45 0 2 1437 308 147 0 29 chr4 111726594 111726664 -43903456 - Lx9 LINE L1 -1 7643 7576 2 1437 1235 157 5 5 chr4 111726695 111726919 -43903201 - L1_Mus4 LINE L1 -4 6632 6409 2 1437 4140 115 35 1 chr4 111726919 111727899 -43902221 - L1_Mus4 LINE L1 -485 6151 5121 2 1437 4826 123 4 0 chr4 111727905 111728623 -43901497 + L1_Mus4 LINE L1 5914 6634 -2 2 1437 341 58 0 19 chr4 111728669 111728722 -43901398 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 2 1437 687 327 154 41 chr4 111728722 111729261 -43900859 - MER76 LTR ERVL -61 630 31 2 1437 2295 204 125 80 chr4 111729296 111730159 -43899961 - RLTR13D6 LTR ERVK 0 902 1 2 1437 35956 47 2 19 chr4 111730460 111735686 -43894434 + L1Md_A LINE L1 451 5586 -297 2 1437 8278 37 2 0 chr4 111735686 111736680 -43893440 + L1Md_A LINE L1 5587 6582 0 2 1437 27 49 0 0 chr4 111736971 111737012 -43893108 + AT_rich Low_complexity Low_complexity 1 41 0 2 1437 239 280 27 27 chr4 111737080 111737190 -43892930 + Lx8 LINE L1 7362 7471 -2 2 1437 25 65 0 0 chr4 111737590 111737636 -43892484 + AT_rich Low_complexity Low_complexity 1 46 0 2 1437 5402 242 43 15 chr4 111737745 111738449 -43891671 - Lx6 LINE L1 0 7460 6748 2 1437 3922 128 26 0 chr4 111738449 111739034 -43891086 - Lx3C LINE L1 -1 6975 6376 2 1437 5402 242 43 15 chr4 111739034 111739550 -43890570 - Lx6 LINE L1 -713 6747 6206 2 1437 569 288 144 16 chr4 111739644 111739838 -43890282 + RMER21B LTR ERV1 349 567 -275 3 1437 417 221 47 0 chr4 111740054 111740140 -43889980 - Lx6 LINE L1 -1259 6201 6112 2 1437 2202 240 116 16 chr4 111740142 111740808 -43889312 + RMER19A LTR ERVK 3 734 -3 3 1437 2929 15 0 0 chr4 111740815 111741157 -43888963 - L1Md_T LINE L1 -521 5362 5021 3 1437 1763 25 0 0 chr4 111741156 111741360 -43888760 + L1Md_T LINE L1 5383 5586 -297 3 1437 8593 25 3 0 chr4 111741360 111742353 -43887767 + L1Md_T LINE L1 5587 6582 0 3 1437 914 261 43 41 chr4 111742366 111742711 -43887409 - Lx6 LINE L1 -1343 6117 5778 2 1437 1998 112 0 3 chr4 111744434 111744731 -43885389 - L1_Mus4 LINE L1 -6 6630 6335 3 1437 343 372 74 34 chr4 111746172 111746470 -43883650 - L1ME1 LINE L1 -15 6164 5855 3 1437 253 47 47 0 chr4 111746593 111746636 -43883484 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 1437 1032 123 101 0 chr4 111746637 111746816 -43883304 - ORR1A2 LTR MaLR -38 289 93 3 1437 193 29 0 56 chr4 111746817 111746853 -43883267 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 1437 26983 121 11 14 chr4 111746853 111749213 -43880907 - L1_Mus2 LINE L1 -13 6553 4210 3 1437 369 0 0 0 chr4 111749213 111749254 -43880866 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1437 26983 142 27 8 chr4 111749254 111752862 -43877258 - L1_Mus2 LINE L1 -1674 4209 523 3 1437 921 308 61 21 chr4 111752862 111753190 -43876930 + MTD LTR MaLR 65 405 -14 3 1437 3085 165 70 4 chr4 111754477 111755017 -43875103 - Lx4A LINE L1 -703 6355 5780 3 1437 742 71 10 0 chr4 111755015 111755114 -43875006 - L1_Mur2 LINE L1 -422 5455 5356 3 1437 261 129 93 12 chr4 111755242 111755328 -43874792 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 3 1437 316 222 25 0 chr4 111755488 111755569 -43874551 + L1MA5 LINE L1 5877 5959 -341 3 1437 452 338 39 13 chr4 111755572 111755803 -43874317 + Lx9 LINE L1 7266 7502 -142 3 1437 12124 105 16 21 chr4 111755876 111758456 -43871664 - L1VL2 LINE L1 -767 2848 283 3 1437 3485 55 0 5 chr4 111759005 111759444 -43870676 + L1Md_F2 LINE L1 6133 6569 -13 3 1437 4018 239 40 49 chr4 111760242 111761769 -43868351 - Lx7 LINE L1 -1417 6279 4753 3 1437 523 167 46 7 chr4 111761841 111761969 -43868151 - RMER12 LTR ERVK -32 1290 1111 3 1437 548 108 0 0 chr4 111761971 111762054 -43868066 + L1_Mus2 LINE L1 6484 6566 0 3 1437 1181 68 0 12 chr4 111762084 111762249 -43867871 + (GAAAA)n Simple_repeat Simple_repeat 2 164 0 3 1437 206 62 0 30 chr4 111762360 111762375 -43867745 + (GA)n Simple_repeat Simple_repeat 2 16 0 3 1437 1160 101 6 0 chr4 111762375 111762553 -43867567 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1437 206 62 0 30 chr4 111762553 111762570 -43867550 + (GA)n Simple_repeat Simple_repeat 1 17 0 3 1437 3205 152 50 108 chr4 111762571 111762707 -43867413 - RMER12 LTR ERVK -532 790 654 3 1437 4175 80 5 24 chr4 111762707 111763282 -43866838 + LTRIS2 LTR ERV1 1 564 0 3 1437 3205 152 50 108 chr4 111763282 111763911 -43866209 - RMER12 LTR ERVK -669 653 71 3 1437 1401 191 20 31 chr4 111763959 111764316 -43865804 - Lx7 LINE L1 -1199 4681 4329 3 1437 6528 70 37 3 chr4 111764708 111765581 -43864539 - RLTR13D6 LTR ERVK 0 902 1 3 1437 272 351 30 66 chr4 111765599 111765797 -43864323 - Lx8 LINE L1 -22 7451 7261 3 1437 298 242 0 0 chr4 111765861 111765927 -43864193 - Lx6 LINE L1 -575 6885 6820 3 1437 7541 225 73 18 chr4 111765938 111768323 -43861797 - Lx6 LINE L1 -865 6595 3824 3 1437 863 168 19 6 chr4 111768334 111768490 -43861630 + RLTR17 LTR ERVK 98 255 -437 3 1437 1355 185 24 0 chr4 111768490 111768739 -43861381 + RLTR17 LTR ERVK 357 611 -81 3 1437 4164 126 11 12 chr4 111768837 111769496 -43860624 - Lx2 LINE L1 0 6997 6340 3 1437 1029 192 37 12 chr4 111769502 111769745 -43860375 - L1Md_A LINE L1 0 6582 6334 3 1437 431 155 0 0 chr4 111769745 111769816 -43860304 - Lx2 LINE L1 -676 6321 6251 3 1437 1449 231 25 0 chr4 111769820 111770144 -43859976 - Lx6 LINE L1 -2069 3811 3480 3 1437 2260 219 15 15 chr4 111770184 111770665 -43859455 - RLTR20B3 LTR ERVK -96 481 1 3 1437 1568 235 39 36 chr4 111770665 111771235 -43858885 - Lx6 LINE L1 -4152 1725 1154 3 1437 828 307 24 8 chr4 111771268 111771555 -43858565 - Lx8 LINE L1 -1035 6661 6381 3 1437 913 268 10 0 chr4 111771615 111771824 -43858296 + B3 SINE B2 3 213 -3 3 1437 327 221 96 17 chr4 111771940 111772055 -43858065 - L1MC2 LINE L1 -111 6233 6110 3 1437 8529 128 10 4 chr4 111772198 111774319 -43855801 - Lx LINE L1 -3 6651 4518 3 1437 24 32 0 0 chr4 111774728 111774759 -43855361 + AT_rich Low_complexity Low_complexity 1 31 0 3 1437 1457 183 14 0 chr4 111774775 111775065 -43855055 - Lx LINE L1 -5 6649 6356 3 1437 3868 156 28 3 chr4 111775066 111776062 -43854058 - Lx LINE L1 -522 6132 5099 3 1437 39066 34 2 8 chr4 111776063 111782234 -43847886 - L1Md_T LINE L1 0 6582 453 3 1437 9603 168 15 196 chr4 111782234 111784747 -43845373 - L1_Mur2 LINE L1 -768 5109 3165 3 1437 1058 166 0 5 chr4 111784747 111784941 -43845179 - Lx LINE L1 -13 6641 6449 3 1437 9603 168 15 196 chr4 111784941 111785582 -43844538 - L1_Mur2 LINE L1 -2713 3164 2529 3 1437 2327 71 4 1 chr4 111785583 111786080 -43844040 - MusHAL1 LINE L1 -2420 933 437 3 1437 867 131 0 0 chr4 111786080 111786240 -43843880 + (TC)n Simple_repeat Simple_repeat 1 160 0 3 1437 8968 146 28 1 chr4 111786596 111788585 -43841535 - Lx2 LINE L1 0 6997 4966 3 1437 2004 306 21 14 chr4 111788582 111789287 -43840833 - Lx7 LINE L1 -397 7299 6590 3 1437 959 299 32 25 chr4 111789297 111789730 -43840390 - L1MC LINE L1 -536 5808 5373 3 1437 21 0 0 0 chr4 111791301 111791322 -43838798 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 21 36 0 0 chr4 111792024 111792052 -43838068 + AT_rich Low_complexity Low_complexity 1 28 0 3 1437 1858 86 0 110 chr4 111794265 111794592 -43835528 - L1_Mus3 LINE L1 -7 6631 6341 3 1437 1082 68 106 0 chr4 111796794 111796955 -43833165 - L1Md_F2 LINE L1 -12 6570 6393 3 1437 345 308 135 29 chr4 111797550 111797757 -43832363 + RMER15 LTR ERVL 333 561 -14 3 1437 961 322 81 2 chr4 111798443 111798851 -43831269 + RMER15-int LTR ERVL 871 1310 -3689 3 1437 320 0 25 0 chr4 111800032 111800072 -43830048 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1437 329 278 65 43 chr4 111800140 111800279 -43829841 + RMER15-int LTR ERVL 4677 4818 -181 3 1437 1837 177 24 88 chr4 111800671 111800720 -43829400 + RMER4A LTR ERVK 33 70 -396 3 1437 1756 64 4 4 chr4 111800720 111800955 -43829165 - L1_Mus1 LINE L1 0 6567 6333 3 1437 1837 177 24 88 chr4 111800955 111801369 -43828751 + RMER4A LTR ERVK 71 466 0 3 1437 2889 200 88 76 chr4 111801369 111802116 -43828004 + MurERV4-int LTR ERVK 1 756 -4504 3 1437 277 57 0 0 chr4 111802116 111802151 -43827969 - U2 snRNA snRNA -153 35 1 3 1437 1151 63 0 0 chr4 111802442 111802584 -43827536 - B1_Mm SINE Alu -5 142 1 3 1437 330 240 118 16 chr4 111802591 111802718 -43827402 - MYSERV6-int LTR ERVK -4865 4094 3955 3 1437 1268 138 81 29 chr4 111802769 111803015 -43827105 - RLTR22_Mur LTR ERVK 0 1848 1590 3 1437 1256 161 8 71 chr4 111803257 111803525 -43826595 - RLTR22_Mur LTR ERVK -1044 804 554 3 1437 736 182 0 71 chr4 111803550 111803704 -43826416 - RLTR22_Mur LTR ERVK -1705 143 1 3 1438 295 276 80 25 chr4 111805624 111805834 -43824286 - RLTR12B LTR ERVK -297 231 8 3 1438 6200 231 38 19 chr4 111805841 111807956 -43822164 + MurERV4-int LTR ERVK 692 2961 -2299 3 1438 1038 145 67 5 chr4 111807929 111808123 -43821997 + MurERV4-int LTR ERVK 4336 4541 -719 3 1438 1932 138 3 10 chr4 111808121 111808435 -43821685 + MurERV4-int LTR ERVK 4697 5008 -252 3 1438 189 0 0 0 chr4 111808896 111808917 -43821203 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 1438 491 298 43 38 chr4 111809009 111809194 -43820926 - B2_Mm2 SINE B2 0 195 10 3 1438 244 395 0 0 chr4 111809118 111809204 -43820916 - RSINE1 SINE B4 -79 86 1 3 1438 624 324 32 18 chr4 111809221 111809438 -43820682 + Lx8 LINE L1 7118 7337 -136 3 1438 227 291 57 41 chr4 111809543 111809665 -43820455 + Lx6 LINE L1 7320 7443 -17 3 1438 261 175 32 0 chr4 111810139 111810202 -43819918 + URR1B DNA MER1_type 110 174 -51 3 1438 286 250 11 11 chr4 111810614 111810703 -43819417 - L1M3 LINE L1 -603 5565 5477 3 1438 3095 183 59 10 chr4 111810977 111811093 -43819027 - Lx2A1 LINE L1 -2 7006 6861 3 1438 258 32 0 0 chr4 111811093 111811124 -43818996 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 1438 3095 183 59 10 chr4 111811124 111811614 -43818506 - Lx2A1 LINE L1 -148 6860 6370 3 1438 443 100 0 14 chr4 111811616 111811646 -43818474 + (TTC)n Simple_repeat Simple_repeat 3 32 0 3 1438 1382 50 6 0 chr4 111811646 111811825 -43818295 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1438 443 100 0 14 chr4 111811825 111811865 -43818255 + (TTC)n Simple_repeat Simple_repeat 2 41 0 3 1438 6733 158 35 23 chr4 111811865 111813079 -43817041 - Lx2A1 LINE L1 -597 6411 5154 3 1438 3859 66 88 15 chr4 111813079 111813605 -43816515 - LTRIS2 LTR ERV1 0 564 1 3 1438 6733 178 35 8 chr4 111813605 111814219 -43815901 - Lx2A1 LINE L1 -724 5153 4539 3 1438 5551 162 9 1 chr4 111814218 111815210 -43814910 + Lx2A1 LINE L1 3516 4515 -1362 3 1438 26 30 0 0 chr4 111817142 111817175 -43812945 + AT_rich Low_complexity Low_complexity 1 33 0 3 1438 1784 251 31 102 chr4 111817203 111817745 -43812375 + RLTR18B LTR ERVK 4 507 -5 3 1438 258 32 0 0 chr4 111817753 111817784 -43812336 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1438 1499 240 18 41 chr4 111817811 111818202 -43811918 + RLTR18-int LTR ERVK 3 384 -4977 3 1438 195 42 0 0 chr4 111818597 111818621 -43811499 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1438 21 0 0 0 chr4 111819732 111819753 -43810367 + AT_rich Low_complexity Low_complexity 1 21 0 3 1438 24338 120 7 5 chr4 111820024 111822651 -43807469 - L1VL1 LINE L1 -803 5080 2443 3 1438 4017 158 34 14 chr4 111822651 111823008 -43807112 - RMER17D2 LTR ERVK 0 809 453 3 1438 447 19 0 0 chr4 111823008 111823060 -43807060 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1438 4017 158 34 14 chr4 111823060 111823494 -43806626 - RMER17D2 LTR ERVK -357 452 3 3 1438 24338 125 10 12 chr4 111823494 111825536 -43804584 - L1VL1 LINE L1 -3441 2442 410 3 1438 1146 160 24 0 chr4 111825536 111825749 -43804371 - L1_Mur1 LINE L1 -2159 3727 3510 3 1438 3677 137 26 0 chr4 111825749 111826334 -43803786 - L1_Mus3 LINE L1 -12 6626 6027 3 1438 8565 130 10 35 chr4 111826335 111826616 -43803504 - L1VL4 LINE L1 -1192 2367 2092 3 1438 3205 63 5 0 chr4 111826616 111827010 -43803110 - MTA_Mm LTR MaLR 0 396 1 3 1438 8565 130 10 35 chr4 111827010 111827932 -43802188 - L1VL4 LINE L1 -1468 2091 1205 3 1438 210 37 0 0 chr4 111827932 111827959 -43802161 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1438 930 140 0 0 chr4 111827960 111828096 -43802024 - B1_Mus1 SINE Alu -12 136 1 3 1438 8565 172 8 74 chr4 111828096 111829175 -43800945 - L1VL4 LINE L1 -2355 1204 196 3 1438 427 231 123 61 chr4 111829238 111829437 -43800683 + L1VL2 LINE L1 443 604 -5731 3 1438 242 365 31 10 chr4 111829480 111829577 -43800543 - MLT1E3 LTR MaLR -187 437 339 3 1438 229 330 10 20 chr4 111829871 111829970 -43800150 - MLT-int LTR MaLR -12 1723 1626 3 1438 936 91 0 0 chr4 111830116 111830248 -43799872 + (TTTC)n Simple_repeat Simple_repeat 1 132 0 3 1438 1079 64 0 0 chr4 111830255 111830395 -43799725 - B1_Mm SINE Alu -5 142 3 3 1438 224 348 124 0 chr4 111830395 111830484 -43799636 - PB1D10 SINE Alu -17 100 1 3 1438 27 29 0 0 chr4 111830555 111830589 -43799531 + AT_rich Low_complexity Low_complexity 1 34 0 3 1438 634 289 71 20 chr4 111830939 111831137 -43798983 + B3 SINE B2 2 209 -7 3 1438 2502 92 9 0 chr4 111831415 111831764 -43798356 - L1_Mus3 LINE L1 -1 6637 6286 3 1438 1838 157 103 24 chr4 111832054 111832433 -43797687 - RLTR9E LTR ERVK 0 409 1 3 1438 433 97 0 89 chr4 111832435 111832514 -43797606 - ETnERV2-int LTR ERVK -3 7403 7332 3 1438 1362 188 189 11 chr4 111832514 111832885 -43797235 - RLTR13D6 LTR ERVK -362 540 104 3 1438 1580 146 8 4 chr4 111832949 111833196 -43796924 - ETnERV3-int LTR ERVK -32 5776 5529 3 1438 315 158 2 52 chr4 111833197 111833277 -43796843 - ETnERV3-int LTR ERVK -1172 6072 6009 3 1438 1341 168 24 16 chr4 111833378 111833725 -43796395 - ETnERV2-int LTR ERVK -983 6423 6128 3 1438 4094 183 29 40 chr4 111833695 111835410 -43794710 - ETnERV2-int LTR ERVK -3321 4085 2356 3 1438 1790 176 193 19 chr4 111835432 111835904 -43794216 - ETnERV2-int LTR ERVK -4425 2981 2428 3 1438 3289 160 96 109 chr4 111835901 111837199 -43792921 - ETnERV2-int LTR ERVK -5321 2085 1 3 1438 1904 152 91 24 chr4 111837200 111837583 -43792537 - RLTR9E LTR ERVK 0 409 1 3 1438 21 0 0 0 chr4 111837838 111837859 -43792261 + AT_rich Low_complexity Low_complexity 1 21 0 4 1438 25 0 0 0 chr4 111837935 111837960 -43792160 + AT_rich Low_complexity Low_complexity 1 25 0 4 1438 510 312 82 15 chr4 111837967 111838174 -43791946 + Lx6 LINE L1 6517 6735 -725 4 1438 699 12 0 0 chr4 111838174 111838254 -43791866 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1438 651 334 47 19 chr4 111838254 111838545 -43791575 + Lx6 LINE L1 6954 7169 -291 4 1438 3561 164 54 11 chr4 111838670 111839371 -43790749 - Lx LINE L1 -512 5371 4641 4 1438 5993 135 44 54 chr4 111839370 111840690 -43789430 + Lx LINE L1 5347 6649 -5 4 1438 451 283 30 42 chr4 111840700 111840866 -43789254 + Lx6 LINE L1 7271 7434 -26 4 1438 800 354 85 18 chr4 111840961 111841476 -43788644 + Lx8 LINE L1 6923 7472 -1 4 1438 29 0 0 0 chr4 111841651 111841680 -43788440 + AT_rich Low_complexity Low_complexity 1 29 0 4 1438 270 306 31 0 chr4 111842100 111842198 -43787922 + RMER15 LTR ERVL 410 510 -65 4 1438 256 352 96 48 chr4 111842958 111843125 -43786995 + MT2A LTR ERVL 215 389 -144 4 1438 545 328 65 57 chr4 111843210 111843775 -43786345 - Lx8 LINE L1 -1125 6348 5779 4 1438 3301 230 24 6 chr4 111843984 111844534 -43785586 + Lx5 LINE L1 6160 6706 -344 4 1438 486 0 0 0 chr4 111844534 111844588 -43785532 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1438 3301 230 24 6 chr4 111844588 111844711 -43785409 + Lx5 LINE L1 6707 6844 -206 4 1438 22 35 0 0 chr4 111845058 111845087 -43785033 + AT_rich Low_complexity Low_complexity 1 29 0 4 1438 639 326 66 20 chr4 111845248 111845445 -43784675 + B3 SINE B2 6 211 -5 4 1438 533 256 6 47 chr4 111846991 111847163 -43782957 - Lx7 LINE L1 -1419 6277 6113 4 1438 24 53 0 0 chr4 111847233 111847271 -43782849 + AT_rich Low_complexity Low_complexity 1 38 0 4 1438 5930 117 11 3 chr4 111847334 111847708 -43782412 - L1VL4 LINE L1 -2371 1188 811 4 1438 441 0 0 0 chr4 111847708 111847757 -43782363 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1438 5930 154 6 26 chr4 111847757 111848586 -43781534 - L1VL4 LINE L1 -5492 810 3 4 1438 3727 127 38 12 chr4 111848588 111849194 -43780926 - Lx3A LINE L1 -333 6648 6027 4 1438 12810 152 20 40 chr4 111849192 111850251 -43779869 + L1_Mm LINE L1 1913 2948 -2935 4 1438 3438 30 0 2 chr4 111850251 111850648 -43779472 + MTA_Mm LTR MaLR 1 396 0 4 1438 12810 152 20 40 chr4 111850648 111852092 -43778028 + L1_Mm LINE L1 2949 4364 -1519 4 1438 1067 157 11 0 chr4 111852088 111852279 -43777841 + Lx3A LINE L1 5174 5366 -511 4 1438 26590 108 39 12 chr4 111852281 111858376 -43771744 + L1_Mus3 LINE L1 371 6632 -6 4 1438 3114 145 55 0 chr4 111858372 111858904 -43771216 + L1_Mm LINE L1 4166 4726 -1157 4 1438 11089 128 34 21 chr4 111858889 111860155 -43769965 - L1_Mur1 LINE L1 -768 5118 3837 4 1438 252 0 0 0 chr4 111860155 111860183 -43769937 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1438 11089 128 34 21 chr4 111860183 111860871 -43769249 - L1_Mur1 LINE L1 -2050 3836 3139 4 1438 7762 141 45 6 chr4 111860867 111862228 -43767892 + Lx3A LINE L1 5553 6974 -7 4 1438 1915 193 164 8 chr4 111862254 111862771 -43767349 + L1_Mur2 LINE L1 4297 4894 -983 4 1438 339 148 0 0 chr4 111862776 111862830 -43767290 - L1_Mur1 LINE L1 -3476 2410 2357 4 1438 4495 184 45 32 chr4 111862830 111864357 -43765763 - L1_Mur1 LINE L1 -3645 2241 687 4 1438 395 182 45 0 chr4 111864493 111864581 -43765539 - L1_Mur1 LINE L1 -6151 831 740 4 1438 324 281 213 13 chr4 111864603 111864758 -43765362 - L1M4 LINE L1 -4944 1598 1413 4 1438 303 218 0 0 chr4 111864793 111864894 -43765226 + T-rich Low_complexity Low_complexity 1 101 0 4 1438 365 270 20 10 chr4 111865097 111865198 -43764922 - MLT1D LTR MaLR -28 477 376 4 1438 356 326 64 38 chr4 111865427 111865663 -43764457 - MLT1D LTR MaLR -381 246 5 4 1438 272 315 11 22 chr4 111865667 111865758 -43764362 - MLT-int LTR MaLR -9 1726 1637 4 1438 224 316 35 0 chr4 111865934 111865991 -43764129 - B1F1 SINE Alu -90 59 1 4 1438 22 35 0 0 chr4 111866065 111866094 -43764026 + AT_rich Low_complexity Low_complexity 1 29 0 4 1438 705 12 0 0 chr4 111866288 111866370 -43763750 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 4 1438 2413 90 8 31 chr4 111866383 111866638 -43763482 - MTB_Mm LTR MaLR -55 352 105 4 1438 2407 92 3 0 chr4 111866638 111866964 -43763156 + ORR1A2 LTR MaLR 1 327 0 4 1438 2413 90 8 31 chr4 111866964 111867064 -43763056 - MTB_Mm LTR MaLR -303 104 5 4 1438 392 113 0 0 chr4 111867068 111867130 -43762990 - MTB_Mm-int LTR MaLR 0 1098 1037 4 1438 441 0 0 0 chr4 111867130 111867179 -43762941 + (TTA)n Simple_repeat Simple_repeat 3 51 0 4 1438 2530 117 15 2 chr4 111867179 111867574 -43762546 - L1_Mus3 LINE L1 -17 6621 6222 4 1438 406 156 21 10 chr4 111867612 111867709 -43762411 + CT-rich Low_complexity Low_complexity 3 100 0 4 1438 6559 113 14 4 chr4 111867711 111868922 -43761198 - L1Md_F2 LINE L1 -3 6579 5356 4 1438 2715 97 12 28 chr4 111868918 111869343 -43760777 - L1Md_F2 LINE L1 -1104 4779 4362 4 1438 7364 88 2 2 chr4 111869356 111870987 -43759133 - L1Md_F2 LINE L1 -3 6579 4950 4 1438 2745 44 194 3 chr4 111870987 111871353 -43758767 + RLTR10C LTR ERVK 1 436 0 4 1438 2694 61 3 0 chr4 111871353 111871695 -43758425 + MMERVK10C-int LTR ERVK 1 343 -7238 4 1438 820 161 4 180 chr4 111871693 111871965 -43758155 + MMERVK10C-int LTR ERVK 729 952 -6629 4 1438 752 196 227 49 chr4 111872051 111872410 -43757710 + MMERVK10C-int LTR ERVK 312 811 -4595 4 1438 390 110 14 58 chr4 111872421 111872548 -43757572 + MMERVK10C-int LTR ERVK 1721 1947 -5634 4 1438 42564 34 1 11 chr4 111872554 111877633 -43752487 + MMERVK10C-int LTR ERVK 2552 7581 0 4 1438 2850 27 191 3 chr4 111877633 111878000 -43752120 + RLTR10C LTR ERVK 1 436 0 4 1438 12612 89 3 6 chr4 111878000 111878202 -43751918 - L1Md_F LINE L1 -928 4955 4756 4 1438 2624 110 35 92 chr4 111878202 111878713 -43751407 - RLTR45 LTR ERVK 0 482 1 4 1438 12612 89 3 6 chr4 111878713 111880310 -43749810 - L1Md_F LINE L1 -1128 4755 3160 4 1438 3261 153 52 5 chr4 111880308 111880885 -43749235 - L1Md_F LINE L1 -5621 995 392 4 1438 2084 107 10 3 chr4 111880885 111881185 -43748935 - L1_Mus2 LINE L1 -9 6557 6256 4 1438 822 275 59 20 chr4 111881329 111881533 -43748587 + B3 SINE B2 3 214 -2 4 1438 1837 126 8 6 chr4 111881622 111881943 -43748177 - L1_Mus2 LINE L1 -193 6389 6065 4 1438 346 162 0 0 chr4 111882075 111882155 -43747965 - Lx2 LINE L1 0 6997 6918 4 1438 22 35 0 0 chr4 111882597 111882626 -43747494 + AT_rich Low_complexity Low_complexity 1 29 0 4 1438 367 341 39 10 chr4 111882753 111882957 -43747163 + Lx6 LINE L1 6516 6725 -735 4 1438 280 69 16 49 chr4 111882969 111883030 -43747090 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 1438 1429 299 30 47 chr4 111883175 111883684 -43746436 + Lx6 LINE L1 6946 7445 -15 4 1438 527 381 48 6 chr4 111883772 111884107 -43746013 + Lx8 LINE L1 6930 7278 -195 4 1438 5571 218 117 39 chr4 111884195 111884497 -43745623 - RLTR22_Mus LTR ERVK 0 1808 1505 4 1438 267 31 0 0 chr4 111884497 111884529 -43745591 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1438 5571 218 117 39 chr4 111884529 111885903 -43744217 - RLTR22_Mus LTR ERVK -304 1504 2 4 1438 23 0 0 0 chr4 111885976 111885999 -43744121 + AT_rich Low_complexity Low_complexity 1 23 0 4 1438 418 219 34 68 chr4 111886109 111886256 -43743864 + MER2 DNA MER2_type 164 305 -40 4 1438 240 294 70 70 chr4 111886599 111886636 -43743484 + RMER15 LTR ERVL 412 449 -126 4 1438 1902 184 0 0 chr4 111886636 111886963 -43743157 + ORR1A2 LTR MaLR 1 327 0 4 1438 240 294 70 70 chr4 111886963 111887082 -43743038 + RMER15 LTR ERVL 450 568 -7 4 1438 346 248 30 165 chr4 111887549 111887713 -43742407 + L1VL1 LINE L1 221 362 -6060 4 1438 465 272 17 3 chr4 111887775 111887916 -43742204 + L1_Mus2 LINE L1 551 806 -5813 4 1438 30008 122 6 7 chr4 111887924 111893815 -43736305 + L1_Mus2 LINE L1 728 6569 0 4 1438 384 378 38 38 chr4 111894134 111894343 -43735777 - MT2A LTR ERVL -133 400 192 4 1438 4554 197 19 4 chr4 111894412 111895355 -43734765 - Lx2 LINE L1 -377 5509 4553 4 1438 2500 133 27 21 chr4 111895344 111895810 -43734310 + Lx2 LINE L1 5542 6008 -989 4 1438 643 306 33 7 chr4 111895824 111896013 -43734107 - B3 SINE B2 -1 197 1 4 1438 676 187 89 3 chr4 111896277 111896454 -43733666 - ORR1B1 LTR MaLR -23 371 136 4 1438 606 291 35 52 chr4 111896457 111896826 -43733294 - L1_Mur3 LINE L1 -625 5255 4893 4 1438 1242 177 77 60 chr4 111898399 111898704 -43731416 + ORR1A3 LTR MaLR 1 321 -49 4 1438 1173 49 0 14 chr4 111898752 111898898 -43731222 + B1_Mm SINE Alu 4 147 0 4 1438 344 225 0 0 chr4 111898939 111899010 -43731110 + L1MA5 LINE L1 5890 5960 -340 4 1438 378 335 35 20 chr4 111899006 111899204 -43730916 + Lx9 LINE L1 7225 7425 -219 4 1438 315 286 34 7 chr4 111899237 111899385 -43730735 + (TA)n Simple_repeat Simple_repeat 1 152 0 4 1438 233 161 54 0 chr4 111899705 111899761 -43730359 + L1MA5 LINE L1 6234 6292 -8 4 1438 348 350 35 14 chr4 111899824 111899966 -43730154 + Lx8 LINE L1 7082 7226 -247 4 1438 340 250 48 0 chr4 111900110 111900194 -43729926 + B3A SINE B2 2 89 -109 4 1438 487 190 50 0 chr4 111900192 111900292 -43729828 + URR1B DNA MER1_type 121 225 0 4 1438 1783 188 0 3 chr4 111901002 111901328 -43728792 - L1_Mur1 LINE L1 -730 5156 4832 4 1438 5794 142 26 7 chr4 111901328 111903072 -43727048 - L1VL2 LINE L1 -1767 1848 66 4 1438 690 315 152 13 chr4 111903074 111903086 -43727034 + MTD LTR MaLR 49 60 -361 4 1438 3993 52 8 0 chr4 111903086 111903582 -43726538 - L1Md_F2 LINE L1 -3 6579 6080 4 1438 712 288 58 27 chr4 111903582 111903884 -43726236 + MTD LTR MaLR 61 407 -14 4 1438 203 200 28 28 chr4 111904011 111904083 -43726037 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1438 259 279 29 0 chr4 111904122 111904226 -43725894 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1438 204 284 150 50 chr4 111905214 111905314 -43724806 + L3 LINE CR1 3062 3171 -1318 4 1438 286 344 62 15 chr4 111905621 111905895 -43724225 + Lx9 LINE L1 7230 7516 -128 4 1438 28 86 0 0 chr4 111906037 111906107 -43724013 + AT_rich Low_complexity Low_complexity 1 70 0 4 1438 688 330 6 0 chr4 111906805 111906978 -43723142 + B3 SINE B2 2 175 -41 4 1438 1241 202 0 0 chr4 111906979 111907202 -43722918 + URR1B DNA MER1_type 2 224 -1 4 1438 30 0 0 0 chr4 111907264 111907294 -43722826 + AT_rich Low_complexity Low_complexity 1 30 0 4 1438 28 29 0 0 chr4 111907313 111907348 -43722772 + AT_rich Low_complexity Low_complexity 1 35 0 4 1438 321 47 0 0 chr4 111907360 111907403 -43722717 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1438 954 43 36 18 chr4 111907431 111907596 -43722524 + (TCTA)n Simple_repeat Simple_repeat 1 168 0 4 1438 477 174 0 0 chr4 111909041 111909139 -43720981 + (TG)n Simple_repeat Simple_repeat 2 99 0 4 1438 297 201 184 20 chr4 111909193 111909340 -43720780 - Lx7 LINE L1 -1535 6161 5991 4 1438 8648 217 29 11 chr4 111909344 111911445 -43718675 - L1_Mur3 LINE L1 -1043 4834 2697 4 1438 270 0 0 0 chr4 111911454 111911484 -43718636 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1438 2757 206 65 27 chr4 111911491 111912301 -43717819 - L1_Mur3 LINE L1 -3826 2054 1214 4 1438 1182 103 0 0 chr4 111912423 111912704 -43717416 + (TTTC)n Simple_repeat Simple_repeat 1 281 0 4 1438 8284 126 20 5 chr4 111912705 111914252 -43715868 - Lx3_Mus LINE L1 -74 6935 5364 4 1438 5267 126 8 21 chr4 111914254 111915101 -43715019 - RMER17B LTR ERVK -122 836 1 4 1438 5008 118 123 8 chr4 111915101 111916504 -43713616 - L1_Mur1 LINE L1 -4078 1808 225 4 1438 617 260 76 76 chr4 111916510 111916590 -43713530 - L1_Mur3 LINE L1 -6546 1182 1103 4 1438 333 93 0 0 chr4 111916590 111916644 -43713476 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1438 617 260 76 76 chr4 111916644 111916854 -43713266 - L1_Mur3 LINE L1 -6626 1102 892 4 1438 886 343 25 6 chr4 111917629 111917984 -43712136 - Lx8 LINE L1 -744 6729 6368 4 1438 8594 47 3 2 chr4 111918003 111919770 -43710350 - L1Md_F3 LINE L1 -14 6570 4802 5 1438 358 295 10 10 chr4 111919771 111919867 -43710253 + B3 SINE B2 6 101 -115 5 1438 374 0 22 0 chr4 111920032 111920078 -43710042 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1438 248 266 40 60 chr4 111920286 111920386 -43709734 - L1MC2 LINE L1 -257 6087 5990 5 1438 1892 211 2 64 chr4 111921234 111921655 -43708465 - Lx3B LINE L1 -4 6969 6575 5 1438 297 133 0 0 chr4 111921655 111921700 -43708420 + RLTR26 LTR ERVK 1 45 -597 5 1438 2121 259 51 102 chr4 111921709 111922626 -43707494 + RMER17B LTR ERVK 74 943 -15 5 1438 1685 158 14 14 chr4 111922627 111922916 -43707204 - Lx3B LINE L1 -393 6580 6292 5 1438 1856 121 0 17 chr4 111922907 111923287 -43706833 - Lx3B LINE L1 -2517 3369 3077 5 1438 5458 159 5 14 chr4 111923288 111924428 -43705692 - L1_Mur1 LINE L1 -3652 2234 1123 5 1438 207 0 0 0 chr4 111924436 111924459 -43705661 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1438 1158 69 0 0 chr4 111924459 111924595 -43705525 - B1_Mm SINE Alu -8 139 4 5 1438 3695 177 22 32 chr4 111924595 111925172 -43704948 - L1_Mur1 LINE L1 -5862 1122 569 5 1438 247 201 0 37 chr4 111925479 111925533 -43704587 - L1_Mur1 LINE L1 -6418 566 521 5 1438 1140 272 103 53 chr4 111928665 111929064 -43701056 - MTD LTR MaLR 0 419 1 5 1438 277 359 156 3 chr4 111929100 111929427 -43700693 + L2 LINE L2 2275 2651 -768 5 1438 621 23 35 0 chr4 111929525 111929612 -43700508 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 5 1438 464 176 10 0 chr4 111930758 111930860 -43699260 + (TG)n Simple_repeat Simple_repeat 1 103 0 5 1438 1343 109 9 5 chr4 111931710 111931922 -43698198 - L1_Mur1 LINE L1 -1758 4128 3916 5 1438 6769 162 10 6 chr4 111932417 111933717 -43696403 - L1_Mur1 LINE L1 -1965 3921 2617 5 179 34214 93 2 6 chr4 111933715 111939709 -43690411 - L1Md_F2 LINE L1 -187 6395 218 5 1439 545 138 216 0 chr4 111939720 111939836 -43690284 - RLTR19-int LTR ERVK -5177 960 820 5 1439 1765 221 37 32 chr4 111939834 111940240 -43689880 - RLTR19-int LTR ERVK -5532 605 198 5 1439 248 350 14 109 chr4 111940489 111940627 -43689493 - RLTR33 LTR ERVK -85 593 469 5 1439 557 183 0 0 chr4 111940911 111941004 -43689116 - L1_Mur2 LINE L1 -756 5121 5029 5 1439 341 316 149 0 chr4 111941095 111941269 -43688851 + RMER15-int LTR ERVL 939 1138 -3861 5 1439 3618 107 8 2 chr4 111941515 111942042 -43688078 - L1_Mm LINE L1 -756 5127 4598 5 1439 704 64 17 0 chr4 111942044 111942147 -43687973 + L1_Mus3 LINE L1 6173 6261 -377 5 1439 371 296 8 60 chr4 111942690 111942823 -43687297 - RLTR26 LTR ERVK -1 641 516 5 1439 549 284 0 0 chr4 111942832 111942973 -43687147 - MuRRS4-int LTR ERV1 -1390 3673 3533 5 1439 1456 271 73 48 chr4 111943211 111943692 -43686428 - RLTR26 LTR ERVK -149 493 1 5 1439 455 313 103 51 chr4 111944076 111944251 -43685869 - B3 SINE B2 -27 189 6 5 1439 2357 68 3 0 chr4 111944287 111944594 -43685526 - L1_Mus1 LINE L1 0 6567 6260 5 1439 8781 97 6 15 chr4 111944625 111946401 -43683719 - Lx3_Mus LINE L1 -161 6848 5097 5 1439 750 138 25 0 chr4 111946402 111946562 -43683558 + Lx3_Mus LINE L1 6846 7009 0 5 1439 536 336 84 14 chr4 111946583 111946858 -43683262 + Lx8 LINE L1 7162 7455 -18 5 1439 304 274 25 33 chr4 111946869 111946990 -43683130 + Lx7 LINE L1 7577 7696 0 5 1439 1472 89 0 0 chr4 111947377 111947567 -43682553 + B2_Mm1t SINE B2 1 190 -3 5 1439 22 35 0 0 chr4 111947957 111947986 -43682134 + AT_rich Low_complexity Low_complexity 1 29 0 5 1439 340 319 53 41 chr4 111948002 111948087 -43682033 + L1MB3 LINE L1 5933 6024 -159 5 1439 2610 52 6 15 chr4 111948087 111948417 -43681703 + IAPLTR2b LTR ERVK 1 327 0 5 1439 340 319 53 41 chr4 111948417 111948576 -43681544 + L1MB3 LINE L1 6025 6180 -3 5 1439 311 281 101 10 chr4 111948796 111949046 -43681074 - L1M3 LINE L1 -442 5741 5475 5 1439 835 263 34 0 chr4 111951071 111951280 -43678840 + RLTR18B LTR ERVK 23 238 -274 5 1439 871 265 58 27 chr4 111951287 111951547 -43678573 + RLTR18B LTR ERVK 180 447 -65 5 1439 1209 272 23 43 chr4 111951582 111951977 -43678143 + RLTR18-int LTR ERVK 3 389 -4972 5 1439 29 0 0 0 chr4 111952827 111952856 -43677264 + AT_rich Low_complexity Low_complexity 1 29 0 5 1439 31 58 0 0 chr4 111953282 111953334 -43676786 + AT_rich Low_complexity Low_complexity 1 52 0 5 1439 384 22 0 0 chr4 111954124 111954169 -43675951 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1439 670 270 101 80 chr4 111954173 111954777 -43675343 - L1M2b LINE L1 -897 6308 5692 5 1439 266 283 60 10 chr4 111954786 111954886 -43675234 - L1M2b LINE L1 -6636 573 469 5 1439 345 207 0 0 chr4 111955094 111955176 -43674944 + (CAT)n Simple_repeat Simple_repeat 2 83 0 5 1439 2232 181 5 5 chr4 111955196 111955578 -43674542 - Lx2A1 LINE L1 -543 6465 6084 5 1439 249 108 0 0 chr4 111955579 111955616 -43674504 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1439 2259 115 3 8 chr4 111955620 111955981 -43674139 - BGLII LTR ERVK -7 414 56 5 1439 3227 200 42 50 chr4 111955981 111956939 -43673181 - RMER3D-int LTR ERVK -2 2840 1891 5 1439 2323 178 110 67 chr4 111956907 111957576 -43672544 - RMER3D-int LTR ERVK -1148 1694 470 5 1439 754 159 4 54 chr4 111957595 111957856 -43672264 + CT-rich Low_complexity Low_complexity 1 247 0 5 1439 324 155 0 101 chr4 111957857 111957936 -43672184 - RMER3D-int LTR ERVK -6326 1080 1010 5 1439 485 137 0 0 chr4 111957905 111957978 -43672142 - RMER3D-int LTR ERVK -2281 561 489 5 1439 727 225 0 43 chr4 111958116 111958325 -43671795 - RMER3D-int LTR ERVK -1991 851 652 5 1439 529 135 45 0 chr4 111958337 111958426 -43671694 - RMER3D-int LTR ERVK -2259 583 491 5 1439 2400 113 38 2 chr4 111958843 111959243 -43670877 - BGLII LTR ERVK -2 419 6 5 1439 441 0 0 0 chr4 111959245 111959294 -43670826 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1439 246 193 0 0 chr4 111959294 111959351 -43670769 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1439 8229 144 31 9 chr4 111959367 111959736 -43670384 - Lx2 LINE L1 -11 6986 6614 5 1439 3953 154 63 84 chr4 111959736 111960657 -43669463 + RMER17A2 LTR ERVK 1 902 -4 5 1439 8229 148 31 13 chr4 111960657 111961683 -43668437 - Lx2 LINE L1 -384 6613 5556 5 1439 189 0 0 0 chr4 111961693 111961714 -43668406 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1439 785 63 0 26 chr4 111961714 111961817 -43668303 - B1_Mm SINE Alu -9 138 37 5 1439 2805 230 10 130 chr4 111961817 111962307 -43667813 - Lx2 LINE L1 -325 5555 5063 5 1439 360 290 53 8 chr4 111962307 111962439 -43667681 - MLT1E2 LTR MaLR -489 138 1 5 1439 714 298 65 10 chr4 111963223 111963423 -43666697 + B3 SINE B2 2 212 -4 5 1439 4945 211 49 11 chr4 111963654 111964132 -43665988 + Lx6 LINE L1 3170 3656 -2221 5 1439 261 0 0 0 chr4 111964132 111964161 -43665959 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1439 4945 211 49 11 chr4 111964161 111964975 -43665145 + Lx6 LINE L1 3657 4510 -1367 5 1439 7648 94 19 24 chr4 111964967 111966182 -43663938 + MusHAL1 LINE L1 1503 2711 -1 5 1439 2740 244 22 59 chr4 111966232 111966291 -43663829 + Lx6 LINE L1 4664 4718 -1159 5 1439 2395 202 50 30 chr4 111966291 111966848 -43663272 - RLTR12A LTR ERVK 0 568 1 5 1439 2740 244 22 59 chr4 111966848 111967637 -43662483 + Lx6 LINE L1 4719 5481 -396 5 1439 3440 201 41 8 chr4 111967637 111968364 -43661756 - RMER6A LTR ERVK -5 751 1 5 1439 2352 232 22 17 chr4 111968367 111969108 -43661012 + Lx6 LINE L1 5483 6222 -1238 5 1439 1306 349 20 18 chr4 111969116 111969784 -43660336 + Lx6 LINE L1 6455 7050 0 5 1439 24 53 0 0 chr4 111970307 111970345 -43659775 + AT_rich Low_complexity Low_complexity 1 38 0 5 1439 2054 278 140 36 chr4 111970479 111971309 -43658811 + Lx6 LINE L1 6519 7434 -26 5 1439 476 359 83 58 chr4 111971405 111971923 -43658197 + Lx8 LINE L1 6905 7435 -38 5 1439 3392 166 23 11 chr4 111972814 111973536 -43656584 - Lx5 LINE L1 -1123 5927 5191 5 1439 719 262 0 16 chr4 111973535 111973717 -43656403 + Lx4B LINE L1 6875 7053 -5 5 1439 349 399 19 19 chr4 111974369 111974581 -43655539 + MT2A LTR ERVL 186 397 -136 5 1439 281 228 24 48 chr4 111974629 111974712 -43655408 - RLTR22_Mur LTR ERVK -740 1108 1028 5 1439 2221 252 63 46 chr4 111975296 111975787 -43654333 - RLTR22_Mur LTR ERVK -1074 774 281 5 1439 2206 82 53 3 chr4 111975787 111976105 -43654015 - L1_Mus2 LINE L1 0 6566 6233 5 1439 2221 252 63 46 chr4 111976105 111976374 -43653746 - RLTR22_Mur LTR ERVK -1568 280 2 5 1439 304 309 62 75 chr4 111976424 111976553 -43653567 - RMER12B LTR ERVK -27 1377 1251 5 1439 222 128 0 0 chr4 111976553 111976592 -43653528 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1439 304 309 62 75 chr4 111976592 111976623 -43653497 - RMER12B LTR ERVK -154 1250 1219 5 1439 611 216 33 28 chr4 111976663 111976844 -43653276 - RMER12B LTR ERVK -805 599 418 5 1439 1515 238 68 37 chr4 111976848 111977407 -43652713 + RMER12 LTR ERVK 586 1572 0 5 1439 468 160 17 8 chr4 111977484 111977604 -43652516 + (TA)n Simple_repeat Simple_repeat 2 122 0 5 1439 276 342 20 24 chr4 111977773 111978050 -43652070 - Lx8 LINE L1 -620 6853 6513 5 1439 8237 143 31 18 chr4 111978091 111979951 -43650169 - Lx3B LINE L1 -3 6970 5109 5 1439 1133 75 0 0 chr4 111979951 111980097 -43650023 - B1_Mm SINE Alu -1 146 1 5 1439 8237 146 18 30 chr4 111980097 111980566 -43649554 - Lx3B LINE L1 -778 5108 4641 5 1439 180 0 0 0 chr4 111980566 111980586 -43649534 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1439 8237 146 18 30 chr4 111980586 111980787 -43649333 - Lx3B LINE L1 -1246 4640 4435 5 1439 1073 149 0 0 chr4 111980791 111980959 -43649161 + L1_Mur1 LINE L1 5516 5683 -203 5 1439 18129 182 47 29 chr4 111980958 111981968 -43648152 + Lx5 LINE L1 1827 2875 -3002 5 1439 198 0 0 0 chr4 111981968 111981990 -43648130 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 5 1439 18129 182 47 29 chr4 111981990 111982514 -43647606 + Lx5 LINE L1 2876 3465 -2412 5 1439 315 0 0 0 chr4 111982514 111982549 -43647571 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1439 18129 187 47 27 chr4 111982549 111985361 -43644759 + Lx5 LINE L1 3466 6316 -734 5 1439 1922 235 21 153 chr4 111985361 111986065 -43644055 + RMER19C LTR ERVK 1 611 0 5 1439 3873 257 20 20 chr4 111986065 111986237 -43643883 + Lx5 LINE L1 6317 6488 -562 5 1439 2805 86 34 2 chr4 111986237 111986645 -43643475 - BGLII LTR ERVK 0 421 1 5 1439 3873 257 20 20 chr4 111986645 111987214 -43642906 + Lx5 LINE L1 6489 7050 0 5 1439 695 44 0 11 chr4 111987273 111987365 -43642755 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 5 1439 1725 290 154 29 chr4 111988070 111988735 -43641385 + Lx8 LINE L1 6585 7332 -141 5 1439 219 227 0 0 chr4 111988789 111988852 -43641268 + (TATG)n Simple_repeat Simple_repeat 1 63 0 5 1439 3459 227 52 25 chr4 111988961 111989725 -43640395 - Lx5 LINE L1 -3 7047 6263 5 1439 429 254 0 54 chr4 111989725 111989854 -43640266 + MYSERV-int LTR ERVK 4344 4465 -2085 5 1439 1013 292 45 88 chr4 111989861 111990507 -43639613 + MYSERV16_I-int LTR ERVK 151 768 -1558 5 1439 198 0 0 0 chr4 111990522 111990544 -43639576 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1439 567 255 135 19 chr4 111991072 111991280 -43638840 - RLTR22_Mur LTR ERVK 0 1848 1617 5 1439 1004 237 18 74 chr4 111991278 111991462 -43638658 + RLTR22_Mur LTR ERVK 1327 1506 -342 5 1439 2467 71 57 57 chr4 111991462 111991849 -43638271 + L1_Mus2 LINE L1 6180 6566 0 5 1439 1004 237 18 74 chr4 111991849 111991947 -43638173 + RLTR22_Mur LTR ERVK 1507 1593 -255 5 1439 432 37 0 0 chr4 111991948 111992002 -43638118 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1439 544 186 119 0 chr4 111992003 111992102 -43638018 - RLTR22_Mus LTR ERVK -549 1259 1147 5 1439 741 234 59 41 chr4 111992102 111992440 -43637680 + RLTR31_Mur LTR ERVK 3 357 -196 5 1439 1132 69 0 0 chr4 111992440 111992585 -43637535 - B1_Mm SINE Alu 0 147 3 5 1439 703 292 138 54 chr4 111992585 111992775 -43637345 + RLTR31_Mur LTR ERVK 346 561 0 5 1439 2361 222 111 56 chr4 111992781 111993621 -43636499 - RLTR22_Mur LTR ERVK -695 1153 268 6 1439 3926 204 91 8 chr4 111993623 111994089 -43636031 + L1_Mur2 LINE L1 400 866 -6220 6 1439 339 25 0 0 chr4 111994089 111994129 -43635991 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1439 3926 204 91 8 chr4 111994129 111994302 -43635818 + L1_Mur2 LINE L1 867 1061 -6025 6 1439 3562 122 11 20 chr4 111994302 111994659 -43635461 - L1_Mus4 LINE L1 0 6636 6282 6 1439 3190 56 5 0 chr4 111994659 111995053 -43635067 - MTA_Mm LTR MaLR 0 396 1 6 1439 8873 44 5 2 chr4 111995055 111996148 -43633972 - MTA_Mm-int LTR MaLR -2 1096 1 6 1439 3336 35 5 0 chr4 111996148 111996542 -43633578 - MTA_Mm LTR MaLR 0 396 1 6 1439 3562 122 11 20 chr4 111996542 111996741 -43633379 - L1_Mus4 LINE L1 -355 6281 6082 6 1439 14928 145 27 17 chr4 111996741 111997659 -43632461 + L1_Mur2 LINE L1 1062 2038 -3839 6 1439 288 0 0 0 chr4 111997659 111997691 -43632429 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1439 14928 139 20 18 chr4 111997691 111998670 -43631450 + L1_Mur2 LINE L1 2039 3041 -2836 6 1439 2319 129 148 19 chr4 111998670 111999097 -43631023 + RLTR45 LTR ERVK 1 482 0 6 1439 14928 139 20 18 chr4 111999097 112000000 -43630120 + L1_Mur2 LINE L1 3042 3919 -1958 6 1439 7347 149 24 14 chr4 112000000 112000989 -43629131 + Lx LINE L1 3920 4927 -950 1 1439 302 24 48 0 chr4 112000989 112001031 -43629089 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1439 1058 101 0 0 chr4 112001031 112001170 -43628950 - B1_Mus1 SINE Alu -9 139 1 3 1439 7347 150 26 17 chr4 112001170 112002944 -43627176 + Lx LINE L1 4928 6653 -1 1 1439 7698 161 25 13 chr4 112002941 112004610 -43625510 + Lx4A LINE L1 5350 7050 -8 4 1439 1073 223 53 56 chr4 112004611 112004853 -43625267 - RMER12 LTR ERVK -1015 307 66 5 1439 317 24 24 0 chr4 112004853 112004895 -43625225 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1439 1073 223 53 56 chr4 112004895 112004956 -43625164 - RMER12 LTR ERVK -1257 65 5 5 1439 396 0 0 0 chr4 112004977 112005021 -43625099 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1439 507 33 0 0 chr4 112005021 112005081 -43625039 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1439 492 18 0 0 chr4 112005081 112005137 -43624983 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1439 3175 292 66 25 chr4 112005139 112007145 -43622975 - Lx9 LINE L1 -174 7470 5218 1 1439 4141 217 39 10 chr4 112007135 112008076 -43622044 - Lx4B LINE L1 -4 7054 6086 1 1439 5746 162 35 17 chr4 112008080 112008504 -43621616 - L1VL4 LINE L1 -3387 2490 2065 1 1439 690 13 0 0 chr4 112008504 112008583 -43621537 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 1439 5746 160 26 12 chr4 112008583 112009516 -43620604 - L1VL4 LINE L1 -3813 2064 1110 1 1439 1359 126 39 31 chr4 112009531 112009785 -43620335 - L1_Mus2 LINE L1 -9 6629 6374 1 1439 31585 88 3 4 chr4 112009798 112015414 -43614706 - L1Md_F2 LINE L1 0 6582 972 1 1439 3684 99 1 1 chr4 112015398 112015956 -43614164 - L1_Mus2 LINE L1 -444 6122 5589 1 1439 37471 36 1 6 chr4 112015990 112022154 -43607966 - L1Md_T LINE L1 0 6582 459 1 1439 700 292 65 124 chr4 112022154 112022919 -43607201 - L1VL2 LINE L1 -5526 809 90 1 1439 30 27 0 0 chr4 112024066 112024103 -43606017 + AT_rich Low_complexity Low_complexity 1 37 0 1 1439 1458 140 45 70 chr4 112024105 112024435 -43605685 - RLTRETN_Mm LTR ERVK 0 322 1 1 1439 17800 188 39 29 chr4 112024435 112029263 -43600857 - ETnERV2-int LTR ERVK -198 7208 1908 1 1439 2928 86 5 0 chr4 112029469 112029877 -43600243 - ETnERV2-int LTR ERVK -1657 1657 1248 1 1439 1492 120 16 87 chr4 112029881 112030184 -43599936 - RLTRETN_Mm LTR ERVK -32 361 1 2 1439 423 0 0 0 chr4 112030187 112030234 -43599886 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1439 602 280 51 100 chr4 112030240 112030708 -43599412 - RLTR19-int LTR ERVK -2965 3172 2728 2 1439 1378 251 67 69 chr4 112030743 112030839 -43599281 + L1_Rod LINE L1 4384 4454 -1393 2 1439 1962 100 9 78 chr4 112030839 112031185 -43598935 + RLTRETN_Mm LTR ERVK 1 322 0 2 1439 1378 251 67 69 chr4 112031185 112031874 -43598246 + L1_Rod LINE L1 4455 5168 -679 2 1439 2710 131 179 17 chr4 112031853 112032383 -43597737 + MusHAL1 LINE L1 1092 1726 -986 2 1439 2798 65 10 72 chr4 112032383 112032797 -43597323 + RLTR10 LTR ERVK 1 388 -2 2 1439 2710 131 179 17 chr4 112032797 112032858 -43597262 + MusHAL1 LINE L1 1727 1779 -933 2 1439 7262 165 28 11 chr4 112032855 112033248 -43596872 + Lx2 LINE L1 5538 5943 -1054 2 1439 1959 154 155 24 chr4 112033248 112033674 -43596446 + RLTR45 LTR ERVK 1 482 0 2 1439 7262 163 25 12 chr4 112033674 112034713 -43595407 + Lx2 LINE L1 5944 6995 -2 2 1439 192 77 0 0 chr4 112034803 112034829 -43595291 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 1439 1950 203 95 30 chr4 112034841 112035006 -43595114 - RLTR12B LTR ERVK -24 504 341 3 1439 3682 173 88 87 chr4 112035006 112035911 -43594209 - RMER17A2 LTR ERVK 0 906 1 3 1439 1950 203 95 30 chr4 112035911 112036218 -43593902 - RLTR12B LTR ERVK -188 340 1 3 1439 774 22 0 0 chr4 112036356 112036448 -43593672 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 1439 1846 73 0 8 chr4 112037114 112037417 -43592703 + L1Md_F2 LINE L1 6300 6582 0 3 1439 227 303 20 10 chr4 112037499 112037599 -43592521 + L1MB2 LINE L1 5879 5979 -192 3 1439 31 58 0 0 chr4 112037783 112037835 -43592285 + AT_rich Low_complexity Low_complexity 1 52 0 3 1439 361 305 97 7 chr4 112037997 112038599 -43591521 - L1M4 LINE L1 -460 5711 5027 3 1439 348 323 101 6 chr4 112038642 112038801 -43591319 - L1M4 LINE L1 -1208 4938 4765 3 1439 522 317 21 0 chr4 112038893 112038915 -43591205 - B1_Mur1 SINE Alu -1 148 125 3 1439 630 79 0 0 chr4 112038915 112039004 -43591116 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 3 1439 522 317 21 0 chr4 112039004 112039123 -43590997 - B1_Mur1 SINE Alu -25 124 5 3 1439 4917 125 4 11 chr4 112039541 112040332 -43589788 - Lx3A LINE L1 -100 6881 6097 3 1439 1043 64 13 6 chr4 112040335 112040493 -43589627 + LTRIS_Mm LTR ERV1 155 313 -169 4 1439 393 75 0 0 chr4 112040494 112040547 -43589573 + LTRIS_Mm LTR ERV1 430 482 0 4 1439 29989 68 26 19 chr4 112040547 112044976 -43585144 + MuRRS-int LTR ERV1 1 4690 0 4 1439 2503 48 0 0 chr4 112044976 112045289 -43584831 + LTRIS_Mm LTR ERV1 1 313 -169 4 1439 422 19 0 0 chr4 112045290 112045343 -43584777 + LTRIS_Mm LTR ERV1 430 482 0 4 1439 270 226 24 94 chr4 112045347 112045474 -43584646 + MMETn-int LTR ERVK 182 299 -4545 4 1439 350 189 0 13 chr4 112045464 112045539 -43584581 + RLTR45-int LTR ERVK 2091 2164 -5080 4 1439 262 125 0 0 chr4 112045980 112046028 -43584092 + RMER16-int LTR ERVK 141 188 -5218 4 1439 1737 178 97 11 chr4 112046013 112046479 -43583641 + ETnERV2-int LTR ERVK 1590 2095 -5311 4 1439 1475 180 204 40 chr4 112046470 112046951 -43583169 + ETnERV2-int LTR ERVK 2428 2987 -4419 4 1439 19459 108 14 24 chr4 112046967 112047679 -43582441 + ETnERV2-int LTR ERVK 3441 4173 -3233 4 1439 3395 25 8 0 chr4 112047679 112048072 -43582048 + MTA_Mm LTR MaLR 1 396 0 4 1439 8977 37 6 2 chr4 112048072 112049165 -43580955 + MTA_Mm-int LTR MaLR 1 1098 0 4 1439 3437 25 5 0 chr4 112049165 112049559 -43580561 + MTA_Mm LTR MaLR 1 396 0 4 1439 19459 108 14 24 chr4 112049559 112051855 -43578265 + ETnERV2-int LTR ERVK 4174 6420 -986 4 1439 471 96 0 14 chr4 112052076 112052150 -43577970 + ETnERV2-int LTR ERVK 7331 7403 -3 4 1439 2278 158 12 22 chr4 112052152 112052565 -43577555 + RLTR9E LTR ERVK 1 409 0 4 1439 19547 132 25 20 chr4 112052568 112054458 -43575662 + L1_Mus2 LINE L1 2363 4195 -1688 4 1439 575 71 0 12 chr4 112054458 112054544 -43575576 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 1439 19547 116 15 13 chr4 112054544 112056768 -43573352 + L1_Mus2 LINE L1 4196 6491 -75 4 1439 7031 126 17 22 chr4 112056763 112058033 -43572087 - L1_Mur1 LINE L1 -1439 4447 3184 4 1439 1281 74 6 0 chr4 112058036 112058051 -43572069 - B2_Mm1t SINE B2 -16 177 162 4 1439 243 0 0 0 chr4 112058051 112058078 -43572042 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1439 1281 74 6 0 chr4 112058078 112058238 -43571882 - B2_Mm1t SINE B2 -32 161 2 4 1439 343 229 108 103 chr4 112058532 112058746 -43571374 + Lx9 LINE L1 7410 7624 -20 5 1439 204 163 0 0 chr4 112059149 112059192 -43570928 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1439 1298 219 44 56 chr4 112059251 112059570 -43570550 + RMER13B LTR ERVK 594 908 0 5 1439 32 26 0 0 chr4 112059690 112059729 -43570391 + AT_rich Low_complexity Low_complexity 1 39 0 5 1439 8305 30 0 3 chr4 112060061 112061335 -43568785 - L1Md_T LINE L1 0 6582 5315 5 1439 321 281 112 0 chr4 112061457 112061546 -43568574 - MTE2a LTR MaLR -223 156 58 5 1439 192 111 0 0 chr4 112062157 112062193 -43567927 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1439 21 0 0 0 chr4 112062439 112062460 -43567660 + AT_rich Low_complexity Low_complexity 1 21 0 5 1439 597 177 0 0 chr4 112062930 112063043 -43567077 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 1439 480 268 172 37 chr4 112065649 112065905 -43564215 + RLTR10A LTR ERVK 104 411 0 6 1439 398 211 61 52 chr4 112065924 112066039 -43564081 + RLTR10-int LTR ERVK 318 433 -1554 6 1439 216 0 0 0 chr4 112066197 112066221 -43563899 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 179 2550 313 59 43 chr4 112066317 112068437 -43561683 + IAP-d-int LTR ERVK 2689 4842 -1700 6 1440 379 308 18 54 chr4 112068455 112068705 -43561415 + IAP-d-int LTR ERVK 992 1137 -850 6 1440 1097 262 9 39 chr4 112068801 112069139 -43560981 + IAP-d-int LTR ERVK 1292 1619 -368 6 1440 26 30 0 0 chr4 112069227 112069260 -43560860 + AT_rich Low_complexity Low_complexity 1 33 0 6 1440 622 219 15 59 chr4 112069698 112069834 -43560286 + B1_Mur3 SINE Alu 18 147 -2 6 1440 1969 254 62 60 chr4 112069963 112070874 -43559246 + MYSERV16_I-int LTR ERVK 22 768 -1558 6 1440 299 321 102 6 chr4 112070876 112071042 -43559078 + RMER4A LTR ERVK 255 436 -30 6 1440 486 182 45 39 chr4 112071042 112071196 -43558924 + MYSERV16_I-int LTR ERVK 1060 1214 -1112 6 1440 1158 147 21 0 chr4 112071196 112071387 -43558733 - B2_Mm2 SINE B2 0 195 1 6 1440 453 264 17 29 chr4 112071720 112071892 -43558228 + MYSERV-int LTR ERVK 5405 5574 -976 6 1440 981 67 7 0 chr4 112071892 112072027 -43558093 - L1_Mus4 LINE L1 -809 5827 5692 6 1440 5100 111 61 14 chr4 112072027 112072841 -43557279 + L1_Mus4 LINE L1 5777 6629 -7 6 1440 2354 223 56 25 chr4 112072845 112073554 -43556566 + MYSERV16_I-int LTR ERVK 1374 2104 -222 6 1440 786 222 35 15 chr4 112073585 112073782 -43556338 + Lx5 LINE L1 31 231 -6753 7 1440 1192 205 164 8 chr4 112073799 112074318 -43555802 + Lx5 LINE L1 939 1538 -4339 7 1440 318 80 0 0 chr4 112074973 112075023 -43555097 + (A)n Simple_repeat Simple_repeat 1 50 0 7 1440 3613 223 47 55 chr4 112075433 112076685 -43553435 + Lx5 LINE L1 1532 2732 -3145 7 1440 934 123 14 0 chr4 112076685 112076823 -43553297 + B1_Mus1 SINE Alu 2 141 -7 7 1440 4092 201 112 70 chr4 112076823 112078502 -43551618 + Lx5 LINE L1 2570 3997 -1883 7 1440 666 174 25 106 chr4 112078509 112078590 -43551530 + Lx5 LINE L1 5186 5252 -628 7 1440 204 40 0 0 chr4 112078590 112078615 -43551505 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1440 666 174 25 106 chr4 112078615 112078732 -43551388 + Lx5 LINE L1 5253 5368 -512 7 1440 11944 101 25 4 chr4 112078733 112081130 -43548990 + L1Md_F2 LINE L1 469 2917 -2966 7 1440 8183 89 15 4 chr4 112081138 112082298 -43547822 + L1Md_F2 LINE L1 4414 5585 -298 7 1440 6928 95 13 10 chr4 112082299 112083292 -43546828 + L1Md_F2 LINE L1 5587 6582 0 7 1440 2423 222 51 15 chr4 112083296 112084087 -43546033 + Lx5 LINE L1 5352 6162 -888 7 1440 702 36 0 0 chr4 112084098 112084182 -43545938 - L1Md_F2 LINE L1 -239 6343 6260 7 1440 1748 58 8 25 chr4 112084182 112084427 -43545693 + L1Md_F2 LINE L1 6341 6581 -1 7 1440 3505 277 16 25 chr4 112084429 112085311 -43544809 + Lx5 LINE L1 6170 7043 -7 7 1440 565 305 29 0 chr4 112086091 112086265 -43543855 - B3A SINE B2 -19 179 1 7 1440 351 245 19 35 chr4 112087080 112087228 -43542892 + L1M4 LINE L1 5316 5466 -714 7 1440 9329 151 21 11 chr4 112087233 112089219 -43540901 + L1VL4 LINE L1 680 2688 -871 7 1440 8254 167 15 16 chr4 112089227 112091312 -43538808 + Lx2 LINE L1 4902 6988 -9 7 1440 270 0 0 0 chr4 112091312 112091342 -43538778 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1440 378 229 105 0 chr4 112092006 112092111 -43538009 + L1MA4 LINE L1 5793 5908 -392 8 1440 5531 171 35 7 chr4 112092266 112093414 -43536706 + MYSERV16_I-int LTR ERVK 1142 2321 -5 8 1440 2014 196 64 10 chr4 112093421 112093828 -43536292 + RLTR20B2 LTR ERVK 3 431 -129 8 1440 37855 47 6 12 chr4 112093828 112099915 -43530205 - L1Md_A LINE L1 -5 6577 531 8 1440 586 250 46 33 chr4 112099915 112100096 -43530024 + RLTR20B2 LTR ERVK 393 577 0 8 1440 192 158 0 0 chr4 112100096 112100134 -43529986 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 8 1440 294 295 110 39 chr4 112100137 112100292 -43529828 + L1MD3 LINE L1 6661 6826 -1169 8 1440 269 259 68 57 chr4 112100342 112100518 -43529602 + L1MD3 LINE L1 6960 7137 -905 8 1440 739 284 62 52 chr4 112100653 112100888 -43529232 + MER31A LTR ERV1 169 406 -79 8 1440 180 0 0 0 chr4 112100888 112100908 -43529212 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 1440 739 284 62 52 chr4 112100908 112100977 -43529143 + MER31A LTR ERV1 407 475 -10 8 1440 238 261 83 8 chr4 112100979 112101099 -43529021 + L1MD3 LINE L1 7161 7289 -753 8 1440 2729 200 172 41 chr4 112101101 112101809 -43528311 + Lx4B LINE L1 6227 7027 -31 8 1440 408 40 0 0 chr4 112101821 112101871 -43528249 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 8 1440 467 285 128 44 chr4 112102486 112102666 -43527454 + B3A SINE B2 1 195 -3 9 1440 654 246 186 27 chr4 112102679 112102800 -43527320 + RMER5 LTR ERV1 220 351 -183 9 1440 1749 141 28 3 chr4 112102800 112103091 -43527029 - Lx LINE L1 -1 6653 6356 9 1440 654 246 186 27 chr4 112103091 112103232 -43526888 + RMER5 LTR ERV1 352 524 -10 9 1440 662 307 20 92 chr4 112103567 112103810 -43526310 + B4A SINE B4 64 292 0 9 1440 459 228 0 0 chr4 112103833 112103956 -43526164 + (CA)n Simple_repeat Simple_repeat 2 124 0 9 1440 1598 67 0 0 chr4 112104018 112104226 -43525894 + L1_Mus1 LINE L1 6360 6567 0 9 1440 26 50 0 0 chr4 112104232 112104272 -43525848 + AT_rich Low_complexity Low_complexity 1 40 0 9 1440 283 281 110 34 chr4 112104278 112104514 -43525606 + L1M5 LINE L1 4377 4630 -1516 9 1440 220 329 13 0 chr4 112104605 112104681 -43525439 - PB1 SINE Alu -4 123 47 9 1440 1822 184 8 43 chr4 112104726 112105095 -43525025 + RLTR14 LTR ERV1 27 382 0 9 1440 249 212 114 57 chr4 112106842 112106947 -43523173 - L1MA9 LINE L1 -46 6266 6156 1 1440 381 315 46 0 chr4 112107200 112107330 -43522790 + MTE-int LTR MaLR 1188 1323 -257 1 1440 593 287 12 31 chr4 112107344 112107506 -43522614 + MTE-int LTR MaLR 1372 1530 -50 1 1440 345 337 10 0 chr4 112107495 112107596 -43522524 + ORR1E LTR MaLR 7 108 -251 1 1440 226 272 73 12 chr4 112107691 112107773 -43522347 + MTD LTR MaLR 331 417 -2 1 1440 789 11 0 0 chr4 112108023 112108113 -43522007 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 1 1440 7566 107 7 35 chr4 112108113 112109094 -43521026 - Lx3_Mus LINE L1 -978 6031 5117 1 1440 3054 96 0 25 chr4 112109094 112109531 -43520589 - L1_Mus2 LINE L1 -4 6562 6137 1 1440 7566 137 4 53 chr4 112109531 112110044 -43520076 - Lx3_Mus LINE L1 -770 5116 4637 1 1440 2194 253 54 58 chr4 112110032 112111031 -43519089 + L1Md_F LINE L1 301 1123 -5511 1 1440 6965 133 125 40 chr4 112111031 112112460 -43517660 + L1Md_F LINE L1 2142 3691 -2192 1 1440 24 32 0 0 chr4 112115542 112115573 -43514547 + AT_rich Low_complexity Low_complexity 1 31 0 1 1440 504 275 73 68 chr4 112115826 112116070 -43514050 - MTEa LTR MaLR 0 379 113 1 1440 977 61 6 165 chr4 112116289 112116465 -43513655 + B1_Mus1 SINE Alu 1 148 0 1 1440 685 117 0 0 chr4 112117277 112117386 -43512734 - L1Md_F3 LINE L1 -435 6203 6095 1 1440 2971 72 27 5 chr4 112117386 112117794 -43512326 + L1Md_F3 LINE L1 6167 6583 -1 1 1440 485 261 70 0 chr4 112117821 112117936 -43512184 + B3A SINE B2 1 123 -75 1 1440 897 19 0 0 chr4 112117939 112118046 -43512074 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 1440 2978 287 35 32 chr4 112118476 112119436 -43510684 + Lx6 LINE L1 6490 7452 -8 1 1440 359 310 20 10 chr4 112119610 112119711 -43510409 + PB1D10 SINE Alu 3 104 -13 1 1440 383 280 94 39 chr4 112119751 112119878 -43510242 - Lx8 LINE L1 0 7473 7339 1 1440 318 26 0 0 chr4 112119878 112119917 -43510203 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1440 383 280 94 39 chr4 112119917 112120023 -43510097 - Lx8 LINE L1 -135 7338 7229 1 1440 312 314 0 0 chr4 112120914 112121035 -43509085 + (TG)n Simple_repeat Simple_repeat 1 121 0 1 1440 374 337 0 0 chr4 112121113 112121214 -43508906 - PB1D10 SINE Alu -7 110 10 1 1440 268 173 67 0 chr4 112122018 112122093 -43508027 + L1_Rod LINE L1 1682 1761 -4086 1 1440 317 209 0 129 chr4 112122101 112122233 -43507887 + L1_Mur3 LINE L1 3617 3731 -2149 1 1440 1299 307 36 47 chr4 112122393 112123330 -43506790 + L1M2 LINE L1 3377 4303 -1840 1 1440 338 0 24 0 chr4 112123390 112123432 -43506688 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1440 1301 30 18 0 chr4 112123432 112123596 -43506524 + (TATATG)n Simple_repeat Simple_repeat 2 168 0 1 1440 36344 48 1 16 chr4 112123800 112129939 -43500181 - L1Md_A LINE L1 0 6585 543 1 1440 243 88 0 0 chr4 112130460 112130494 -43499626 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1440 21 0 0 0 chr4 112130540 112130561 -43499559 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 1471 251 14 187 chr4 112130726 112131465 -43498655 - RMER19C LTR ERVK 0 611 1 1 1440 889 274 39 4 chr4 112131712 112131969 -43498151 + Lx7 LINE L1 6268 6533 -1163 1 1440 3878 150 13 3 chr4 112131969 112132646 -43497474 - IAPEY3-int LTR ERVK -2 7678 6995 1 1440 1215 107 105 59 chr4 112132650 112132888 -43497232 - IAP-d-int LTR ERVK -1287 5255 5007 1 1440 338 158 0 0 chr4 112132888 112132945 -43497175 - IAP-d-int LTR ERVK -6039 503 447 1 1440 265 314 26 83 chr4 112132964 112133228 -43496892 - RLTR10-int LTR ERVK -6017 1564 1316 1 1440 2666 59 0 0 chr4 112133397 112133738 -43496382 - RLTR10-int LTR ERVK -995 992 652 1 1440 323 89 0 0 chr4 112133741 112133786 -43496334 - RLTR10-int LTR ERVK -6405 137 93 1 1440 445 79 68 34 chr4 112133786 112133904 -43496216 + CT-rich Low_complexity Low_complexity 3 124 0 1 1440 342 65 0 0 chr4 112133994 112134040 -43496080 - RLTR10-int LTR ERVK -7314 267 222 1 1440 235 191 0 0 chr4 112134040 112134082 -43496038 - RLTR27 LTR ERVK -37 272 231 1 1440 1042 67 0 0 chr4 112134089 112134224 -43495896 - RLTR10-int LTR ERVK -1784 203 69 1 1440 1956 136 3 7 chr4 112134224 112134520 -43495600 - RLTR10E LTR ERVK -16 295 1 1 1440 1057 214 0 9 chr4 112134520 112134742 -43495378 + Lx7 LINE L1 6528 6747 -949 1 1440 271 241 79 60 chr4 112135213 112135384 -43494736 + LTRIS4 LTR ERV1 251 472 -47 1 1440 1052 187 10 0 chr4 112135401 112135610 -43494510 + Lx7 LINE L1 6743 6953 -743 1 1440 538 259 166 45 chr4 112135610 112135857 -43494263 - RLTR10A LTR ERVK 0 411 114 1 1440 1747 200 17 29 chr4 112135885 112136364 -43493756 - RLTR45-int LTR ERVK -202 7042 6529 1 1440 20083 83 10 3 chr4 112136466 112140098 -43490022 - L1Md_F2 LINE L1 0 6582 2922 1 1440 1457 323 51 45 chr4 112140200 112140851 -43489269 - IAP-d-int LTR ERVK -1335 5207 4547 1 1440 2294 104 30 3 chr4 112140851 112141187 -43488933 + IAPLTR4 LTR ERVK 1 345 0 1 1440 1457 323 51 45 chr4 112141187 112142189 -43487931 - IAP-d-int LTR ERVK -1996 4546 3544 1 1440 559 259 16 16 chr4 112142254 112142475 -43487645 - IAP-d-int LTR ERVK -3726 3855 3511 1 1440 255 321 12 12 chr4 112142518 112142682 -43487438 - IAP-d-int LTR ERVK -4779 2802 2639 1 1440 437 163 55 55 chr4 112142893 112143003 -43487117 - RLTR45-int LTR ERVK -1559 428 319 1 1440 549 265 150 38 chr4 112143020 112143281 -43486839 - RLTR10A LTR ERVK 0 411 104 1 1440 296 275 0 36 chr4 112143312 112143395 -43486725 + Lx6 LINE L1 6941 7020 -440 1 1440 189 107 0 0 chr4 112143555 112143583 -43486537 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1440 282 116 0 0 chr4 112144734 112144777 -43485343 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 1 1440 435 278 118 41 chr4 112146683 112146953 -43483167 - Lx8 LINE L1 -2 7471 7181 1 1440 376 303 53 29 chr4 112146982 112147152 -43482968 - Lx8 LINE L1 -416 7057 6884 1 1440 479 344 42 18 chr4 112147172 112147456 -43482664 - Lx5 LINE L1 -27 7433 7143 1 1440 216 111 0 0 chr4 112147456 112147492 -43482628 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1440 428 301 82 37 chr4 112147500 112147767 -43482353 - Lx5 LINE L1 -365 6685 6483 1 1440 569 307 77 13 chr4 112147748 112148080 -43482040 - Lx5 LINE L1 -1086 6610 5977 1 1440 8198 228 45 51 chr4 112148069 112150071 -43480049 - L1_Mur2 LINE L1 -951 4926 2929 1 1440 2857 29 11 17 chr4 112150071 112150419 -43479701 + ORR1A0 LTR MaLR 1 346 0 1 1440 8198 228 45 51 chr4 112150419 112151300 -43478820 - L1_Mur2 LINE L1 -2949 2928 2062 1 1440 1821 203 3 19 chr4 112151323 112151694 -43478426 - RLTR20B3 LTR ERVK -139 438 74 1 1440 785 219 57 0 chr4 112151703 112151949 -43478171 - L1_Mur2 LINE L1 -4284 1593 1334 1 1440 3163 149 10 12 chr4 112151956 112152984 -43477136 + L1VL4 LINE L1 323 1349 -2210 1 1440 412 232 24 92 chr4 112153017 112153261 -43476859 + L1VL1 LINE L1 57 400 -6022 1 1440 352 191 104 60 chr4 112153298 112153432 -43476688 + L1_Mus1 LINE L1 664 803 -5813 1 1440 8932 144 10 31 chr4 112153440 112155675 -43474445 + L1_Mus1 LINE L1 725 2905 -2978 1 1440 2778 57 0 0 chr4 112155675 112156007 -43474113 + IAPEY3_LTR LTR ERVK 1 332 0 1 1440 55127 74 17 2 chr4 112156007 112163574 -43466546 + IAPEY3-int LTR ERVK 1 7680 0 1 1440 2705 69 0 0 chr4 112163574 112163906 -43466214 + IAPEY3_LTR LTR ERVK 1 332 0 1 1440 15290 145 34 18 chr4 112163906 112163953 -43466167 + L1_Mus1 LINE L1 2900 2946 -2937 1 1440 5891 81 8 31 chr4 112163953 112164794 -43465326 - RLTR13B2 LTR ERVK 0 822 1 1 1440 15290 145 34 18 chr4 112164794 112165183 -43464937 + L1_Mus1 LINE L1 2947 3341 -2542 1 1440 216 0 0 0 chr4 112165183 112165207 -43464913 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1440 15290 145 34 18 chr4 112165207 112165336 -43464784 + L1_Mus1 LINE L1 3342 3475 -2408 1 1440 351 0 0 0 chr4 112165336 112165375 -43464745 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1440 15290 145 34 18 chr4 112165375 112167100 -43463020 + L1_Mus1 LINE L1 3476 5233 -650 1 1440 531 0 0 0 chr4 112167100 112167159 -43462961 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1440 9516 107 11 7 chr4 112167159 112168484 -43461636 + L1_Mus1 LINE L1 5235 6567 0 1 1440 10819 131 15 33 chr4 112168516 112169169 -43460951 + L1_Mur1 LINE L1 1685 2311 -1603 1 1440 2504 42 3 6 chr4 112169169 112169484 -43460636 - L1Md_F2 LINE L1 -11 6571 6258 1 1440 10819 143 15 33 chr4 112169484 112171200 -43458920 + L1_Mur1 LINE L1 2305 4008 -1878 1 1440 18459 172 71 11 chr4 112171517 112177311 -43452809 - L1Md_F2 LINE L1 0 6582 419 1 1440 9172 189 10 5 chr4 112177392 112180366 -43449754 + Lx2 LINE L1 4001 6988 -9 1 1440 21 0 0 0 chr4 112180367 112180388 -43449732 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 565 337 32 28 chr4 112180388 112180635 -43449485 - Lx8 LINE L1 -832 6641 6394 1 1440 862 246 0 43 chr4 112180734 112180891 -43449229 + B3 SINE B2 37 187 -29 1 1440 4329 109 21 79 chr4 112180891 112181688 -43448432 + RMER17A LTR ERVK 1 751 0 1 1440 862 246 0 43 chr4 112181688 112181717 -43448403 + B3 SINE B2 188 215 -1 1 1440 223 154 0 0 chr4 112182152 112182191 -43447929 + CT-rich Low_complexity Low_complexity 2 40 0 1 1440 599 95 9 0 chr4 112182194 112182299 -43447821 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1440 205 98 0 47 chr4 112182537 112182580 -43447540 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1440 284 314 66 66 chr4 112182583 112182825 -43447295 - L1MC1 LINE L1 -247 6086 5845 1 1440 29 28 0 0 chr4 112182828 112182864 -43447256 + AT_rich Low_complexity Low_complexity 1 36 0 1 1440 240 86 0 0 chr4 112182925 112182960 -43447160 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 1 1440 828 146 0 0 chr4 112182961 112183139 -43446981 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 1440 1750 275 80 25 chr4 112183271 112183956 -43446164 - Lx7 LINE L1 -284 7412 6690 1 1440 234 0 0 0 chr4 112183977 112184003 -43446117 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1440 845 303 37 14 chr4 112184060 112184495 -43445625 - L1MC1 LINE L1 -527 5817 5373 1 1440 26 0 0 0 chr4 112186535 112186561 -43443559 + AT_rich Low_complexity Low_complexity 1 26 0 1 1440 21 36 0 0 chr4 112186732 112186760 -43443360 + AT_rich Low_complexity Low_complexity 1 28 0 1 1440 35262 52 11 8 chr4 112186768 112192329 -43437791 + L1Md_T LINE L1 7 5584 -299 1 1440 7700 65 2 1 chr4 112192331 112193325 -43436795 + L1Md_T LINE L1 5587 6581 -1 1 1440 1150 290 95 24 chr4 112194221 112194502 -43435618 - MTD LTR MaLR -5 414 125 1 1440 261 57 0 0 chr4 112194502 112194537 -43435583 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1440 486 0 0 0 chr4 112194537 112194590 -43435530 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1440 1150 290 95 24 chr4 112194590 112194685 -43435435 - MTD LTR MaLR -295 124 11 1 1440 211 331 69 30 chr4 112194725 112194856 -43435264 + L2 LINE L2 2276 2411 -1008 1 1440 183 370 67 8 chr4 112194911 112195031 -43435089 + L2 LINE L2 2523 2649 -770 1 1440 264 81 0 0 chr4 112195158 112195195 -43434925 - L1Md_A LINE L1 -5792 932 896 1 1440 3506 47 0 0 chr4 112195197 112195624 -43434496 + L1Md_T LINE L1 6154 6580 -2 1 1440 2399 51 0 0 chr4 112195625 112195918 -43434202 + L1Md_F2 LINE L1 5294 5586 -297 1 1440 7600 58 7 15 chr4 112195918 112196909 -43433211 + L1Md_F2 LINE L1 5587 6569 -13 1 1440 203 175 0 0 chr4 112197007 112197047 -43433073 + A-rich Low_complexity Low_complexity 1 40 0 1 22 3634 43 0 0 chr4 112197369 112197809 -43432311 + L1Md_F2 LINE L1 5147 5586 -297 1 1441 7798 58 1 2 chr4 112197809 112198792 -43431328 + L1Md_F2 LINE L1 5587 6568 -14 1 1441 246 160 0 0 chr4 112198796 112198846 -43431274 + A-rich Low_complexity Low_complexity 1 50 0 1 1441 243 0 0 0 chr4 112199880 112199907 -43430213 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1441 233 269 13 13 chr4 112200637 112200716 -43429404 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1441 7940 159 22 25 chr4 112200841 112201632 -43428488 - Lx3C LINE L1 -6 6970 6169 1 1441 2619 112 42 3 chr4 112201632 112202017 -43428103 + MTB LTR MaLR 1 400 0 1 1441 7940 161 19 20 chr4 112202017 112202738 -43427382 - Lx3C LINE L1 -808 6168 5461 1 1441 303 210 48 0 chr4 112202739 112202801 -43427319 + B1_Mus2 SINE Alu 63 127 -20 1 1441 289 340 96 16 chr4 112203847 112204035 -43426085 - MLT1E2 LTR MaLR -401 226 24 1 1441 1062 76 21 0 chr4 112204041 112204185 -43425935 - B1_Mm SINE Alu 0 147 1 1 1441 399 118 0 0 chr4 112204440 112204516 -43425604 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1441 236 288 0 33 chr4 112204541 112204602 -43425518 - B1F1 SINE Alu -90 59 1 1 1441 520 311 64 20 chr4 112205026 112205229 -43424891 + B3 SINE B2 3 214 -2 1 1441 4060 197 75 28 chr4 112205886 112206751 -43423369 - RMER13B LTR ERVK -2 906 1 1 1441 919 70 70 0 chr4 112207008 112207136 -43422984 + B1_Mm SINE Alu 2 138 -9 1 1441 351 0 0 0 chr4 112207136 112207175 -43422945 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1441 1729 305 133 39 chr4 112207190 112208029 -43422091 + Lx6 LINE L1 6516 7433 -27 2 1441 1165 88 0 0 chr4 112208158 112208306 -43421814 + B1_Mus1 SINE Alu 1 148 0 2 1441 3564 185 23 21 chr4 112208573 112209281 -43420839 - RLTR22_Mur LTR ERVK 0 1848 1140 2 1441 623 248 162 72 chr4 112209281 112209602 -43420518 - RLTR22_Mur LTR ERVK -853 995 646 2 1441 229 267 53 0 chr4 112210448 112210523 -43419597 + ID4_ SINE ID 2 80 -3 2 1441 344 299 23 100 chr4 112210824 112210954 -43419166 + ID_B1 SINE B4 34 153 -71 2 1441 302 309 41 10 chr4 112210897 112210995 -43419125 + B1_Mur4 SINE Alu 20 120 -30 2 1441 2852 170 82 40 chr4 112211395 112212026 -43418094 - RLTR22_Mur LTR ERVK -1187 661 4 2 1441 213 197 92 66 chr4 112212447 112212523 -43417597 - L4 LINE RTE -787 1242 1165 2 1441 31 44 0 0 chr4 112212744 112212789 -43417331 + AT_rich Low_complexity Low_complexity 1 45 0 2 1441 3059 287 63 52 chr4 112213375 112215211 -43414909 - L1_Mur3 LINE L1 -681 5199 3344 2 1441 1139 113 11 5 chr4 112215243 112215429 -43414691 - L1_Mus3 LINE L1 -3 6635 6449 2 1441 420 362 27 43 chr4 112215446 112215703 -43414417 + Lx8 LINE L1 7067 7319 -154 2 1441 531 0 0 0 chr4 112215705 112215764 -43414356 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1441 718 306 37 23 chr4 112215801 112216233 -43413887 - L1_Mur3 LINE L1 -2113 3767 3330 2 1441 1188 325 63 32 chr4 112216288 112216815 -43413305 + Lx8 LINE L1 6736 7278 -195 2 1441 1210 282 67 31 chr4 112216863 112217254 -43412866 + MTD LTR MaLR 1 405 -14 2 1441 219 335 0 26 chr4 112217391 112217547 -43412573 + (CATATA)n Simple_repeat Simple_repeat 4 155 0 2 1441 20842 81 3 13 chr4 112217572 112221409 -43408711 + L1Md_F2 LINE L1 267 4160 -1726 2 1441 23599 44 217 9 chr4 112221410 112225519 -43404601 + L1Md_T LINE L1 631 5586 -297 2 1441 7914 52 5 0 chr4 112225520 112226510 -43403610 + L1Md_T LINE L1 5588 6582 0 2 1441 10675 81 2 0 chr4 112226510 112227950 -43402170 + L1Md_F2 LINE L1 4147 5589 -297 2 1441 7660 66 3 2 chr4 112227950 112228943 -43401177 + L1Md_F2 LINE L1 5590 6583 -2 2 1441 22 0 0 0 chr4 112230279 112230301 -43399819 + AT_rich Low_complexity Low_complexity 1 22 0 2 1441 246 278 0 0 chr4 112230307 112230379 -43399741 + L1MA5 LINE L1 5889 5960 -340 2 1441 427 273 63 42 chr4 112230375 112230612 -43399508 + Lx9 LINE L1 7225 7466 -178 2 1441 427 247 23 4 chr4 112230653 112230916 -43399204 + (TA)n Simple_repeat Simple_repeat 1 268 0 2 1441 388 300 14 9 chr4 112231399 112231549 -43398571 + Lx8 LINE L1 7063 7225 -248 2 1441 25 65 0 0 chr4 112231922 112231968 -43398152 + AT_rich Low_complexity Low_complexity 1 46 0 2 1441 189 0 0 0 chr4 112233139 112233160 -43396960 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1441 245 236 42 0 chr4 112233160 112233232 -43396888 + L1_Mur3 LINE L1 5060 5134 -746 2 1441 4007 210 57 46 chr4 112233459 112234411 -43395709 - L1_Mur3 LINE L1 -562 5318 4360 2 1441 378 0 0 0 chr4 112234411 112234453 -43395667 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2 1441 4007 210 57 46 chr4 112234453 112234670 -43395450 - L1_Mur3 LINE L1 -1521 4359 4136 2 1441 2973 243 108 16 chr4 112234668 112235996 -43394124 - L1_Mur3 LINE L1 -4183 1697 248 2 1441 207 167 0 0 chr4 112236321 112236357 -43393763 + (TTGG)n Simple_repeat Simple_repeat 3 38 0 2 1441 194 105 26 0 chr4 112236360 112236398 -43393722 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 2 1441 283 431 45 31 chr4 112236406 112236763 -43393357 - Lx8 LINE L1 -149 7324 6963 2 1441 923 173 13 0 chr4 112236895 112237051 -43393069 - Lx4A LINE L1 -119 6939 6782 2 1441 308 133 0 0 chr4 112237053 112237098 -43393022 - ORR1A2 LTR MaLR -8 338 294 2 1441 1386 23 97 0 chr4 112237098 112237273 -43392847 - L1Md_F2 LINE L1 -13 6569 6378 2 1441 438 33 0 77 chr4 112237273 112237338 -43392782 + L1Md_T LINE L1 6318 6377 -205 2 1441 1727 161 3 0 chr4 112237339 112237624 -43392496 - ORR1A2 LTR MaLR -41 286 1 2 1441 817 163 10 140 chr4 112237624 112237817 -43392303 - Lx4A LINE L1 -270 6788 6621 2 1441 728 163 66 66 chr4 112237823 112237974 -43392146 + Lx4A LINE L1 6454 6604 -454 2 1441 21 0 0 0 chr4 112239766 112239787 -43390333 + AT_rich Low_complexity Low_complexity 1 21 0 2 1441 3976 196 28 25 chr4 112239924 112240776 -43389344 + RLTR13A LTR ERVK 1 855 0 2 1441 3693 16 121 0 chr4 112241071 112241511 -43388609 + MT2_Mm LTR ERVL 1 493 0 2 1441 47383 21 0 0 chr4 112241511 112246882 -43383238 + MERVL-int LTR ERVL 1 5371 -114 2 1441 310 153 26 53 chr4 112246882 112246958 -43383162 + ORR1A3-int LTR MaLR 567 640 -1323 2 1441 314 0 0 0 chr4 112246958 112246996 -43383124 + MERVL-int LTR ERVL 5448 5485 0 2 1441 3679 16 121 0 chr4 112246996 112247436 -43382684 + MT2_Mm LTR ERVL 1 493 0 2 1441 22 35 0 0 chr4 112247618 112247647 -43382473 + AT_rich Low_complexity Low_complexity 1 29 0 2 1441 206 156 22 0 chr4 112247763 112247808 -43382312 + GA-rich Low_complexity Low_complexity 2 47 0 2 1441 1413 300 17 30 chr4 112248475 112248877 -43381243 - MTD LTR MaLR -5 414 18 2 1441 199 304 12 25 chr4 112248935 112249016 -43381104 + L2 LINE L2 2275 2354 -1065 2 1441 207 314 92 8 chr4 112249139 112249258 -43380862 + L2 LINE L2 2523 2651 -768 2 1441 2288 208 134 36 chr4 112249345 112249963 -43380157 + RMER6C LTR ERVK 1 679 -11 2 1441 4126 215 45 174 chr4 112250107 112250965 -43379155 - L1_Mur3 LINE L1 -632 5248 4346 2 1441 1149 118 0 0 chr4 112250965 112251143 -43378977 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1441 4126 215 45 174 chr4 112251143 112251192 -43378928 - L1_Mur3 LINE L1 -1535 4345 4321 2 1441 861 163 0 0 chr4 112251192 112251327 -43378793 - B1_Mus1 SINE Alu -6 142 8 2 1441 4126 215 45 174 chr4 112251327 112251543 -43378577 - L1_Mur3 LINE L1 -1535 4320 4208 2 1441 1134 102 0 0 chr4 112251543 112251710 -43378410 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 2 1441 4126 215 45 174 chr4 112251710 112252171 -43377949 - L1_Mur3 LINE L1 -1673 4207 3750 2 1441 390 156 44 11 chr4 112252176 112252267 -43377853 + Lx2 LINE L1 6902 6995 -2 2 1441 11237 67 4 1 chr4 112254158 112255628 -43374492 + L1Md_F2 LINE L1 4111 5585 -298 2 1441 7865 57 2 0 chr4 112255629 112256623 -43373497 + L1Md_F2 LINE L1 5587 6582 0 2 1441 264 368 40 34 chr4 112257496 112257673 -43372447 + RMER15 LTR ERVL 356 533 -42 2 1441 3109 126 0 0 chr4 112258196 112258690 -43371430 + L1_Mm LINE L1 3534 4027 -1856 2 1441 356 336 0 8 chr4 112258691 112258817 -43371303 + RMER15-int LTR ERVL 1401 1525 -3474 2 1441 381 102 0 0 chr4 112258853 112258912 -43371208 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1441 785 273 34 55 chr4 112259182 112259473 -43370647 + RMER15-int LTR ERVL 4155 4439 -560 2 1441 287 367 64 14 chr4 112260040 112260181 -43369939 + RMER15 LTR ERVL 412 559 -16 2 1441 344 255 84 93 chr4 112260246 112260471 -43369649 + L1MA4 LINE L1 5639 5861 -439 2 1441 13687 122 6 11 chr4 112260481 112263376 -43366744 - L1_Mus2 LINE L1 0 6654 3692 2 1441 719 140 0 0 chr4 112263376 112263483 -43366637 - U6 snRNA snRNA 0 107 1 2 1441 180 77 0 0 chr4 112264169 112264195 -43365925 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1441 883 75 15 0 chr4 112264195 112264327 -43365793 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 1441 192 40 0 0 chr4 112264327 112264351 -43365769 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1441 407 241 117 28 chr4 112264351 112264496 -43365624 - ORR1D1 LTR MaLR -214 160 3 2 1441 1069 88 0 0 chr4 112264631 112264778 -43365342 + B1_Mus2 SINE Alu 1 147 0 2 1441 237 128 0 0 chr4 112264779 112264826 -43365294 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 2 1441 2440 98 27 0 chr4 112264951 112265288 -43364832 - ORR1A1 LTR MaLR 0 346 1 2 1441 252 86 0 0 chr4 112265430 112265465 -43364655 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1441 447 231 147 0 chr4 112266034 112266156 -43363964 - B2_Mm2 SINE B2 -65 151 4 2 1441 230 336 94 72 chr4 112266182 112266458 -43363662 + Lx8 LINE L1 7122 7403 -70 2 1441 26 30 0 0 chr4 112266591 112266624 -43363496 + AT_rich Low_complexity Low_complexity 1 33 0 2 1441 26447 86 7 5 chr4 112266873 112271334 -43358786 - L1Md_F2 LINE L1 -2 6580 2111 2 1441 3762 137 92 0 chr4 112271320 112271942 -43358178 - L1Md_F2 LINE L1 -5547 1069 391 2 1441 7333 158 50 6 chr4 112271972 112273269 -43356851 - Lx3B LINE L1 -2 6971 5656 2 1441 872 336 59 26 chr4 112273272 112273733 -43356387 - Lx8 LINE L1 -153 7320 6845 2 1441 956 258 48 7 chr4 112273733 112274006 -43356114 + Lx9 LINE L1 6426 6709 -935 2 1441 1665 267 17 17 chr4 112274005 112274417 -43355703 + Lx9 LINE L1 7047 7458 -186 2 1441 468 0 0 0 chr4 112274455 112274507 -43355613 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1441 935 293 20 51 chr4 112274645 112274767 -43355353 - L1_Mur3 LINE L1 -107 5773 5664 2 1441 1242 194 154 12 chr4 112274767 112275086 -43355034 + ORR1B2 LTR MaLR 1 364 -3 2 1441 935 293 20 51 chr4 112275086 112275319 -43354801 - L1_Mur3 LINE L1 -217 5663 5429 2 1441 333 240 88 20 chr4 112275397 112275499 -43354621 - Lx9 LINE L1 -405 7239 7131 2 1441 680 315 20 23 chr4 112275496 112275825 -43354295 - Lx9 LINE L1 -629 7015 6666 2 1441 1462 248 55 22 chr4 112275843 112276210 -43353910 - Lx5 LINE L1 0 7050 6672 2 1441 1920 217 73 25 chr4 112276210 112276956 -43353164 + Lx5 LINE L1 5744 6556 -494 2 1441 319 310 35 0 chr4 112276956 112277069 -43353051 - Lx9 LINE L1 -904 6740 6624 2 1441 701 208 200 11 chr4 112277131 112277306 -43352814 - B3 SINE B2 -7 209 2 2 1441 1969 286 90 47 chr4 112277306 112278700 -43351420 - L1_Mur3 LINE L1 -474 5406 3953 2 1441 328 271 6 103 chr4 112278980 112279047 -43351073 - L1_Mur3 LINE L1 -1971 3909 3849 2 1441 1023 98 35 0 chr4 112279047 112279190 -43350930 - B1_Mus1 SINE Alu 0 148 1 2 1441 328 271 6 103 chr4 112279190 112279278 -43350842 - L1_Mur3 LINE L1 -2032 3848 3769 2 1441 2785 116 19 0 chr4 112279283 112279696 -43350424 - BGLII LTR ERVK 0 421 1 2 1441 1022 137 137 0 chr4 112279759 112279934 -43350186 - Lx4A LINE L1 -427 6631 6433 2 1441 2355 191 7 14 chr4 112279934 112280375 -43349745 + Lx4A LINE L1 6619 7056 -2 2 1441 522 281 31 44 chr4 112280419 112280646 -43349474 - L1_Mur3 LINE L1 -221 5659 5436 2 1441 316 262 85 28 chr4 112280728 112280834 -43349286 - Lx9 LINE L1 -400 7244 7133 2 1441 1087 320 24 10 chr4 112280856 112281269 -43348851 - Lx9 LINE L1 -595 7049 6631 2 1441 6604 173 23 45 chr4 112281303 112283628 -43346492 + L1Md_F LINE L1 232 2310 -3573 2 1441 197 0 71 0 chr4 112283628 112283656 -43346464 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 2 1441 906 92 0 51 chr4 112283656 112283794 -43346326 - B1_Mus2 SINE Alu 0 147 17 2 1441 563 269 76 68 chr4 112283799 112284154 -43345966 - L1_Mur3 LINE L1 -2193 3687 3330 2 1441 1374 329 36 13 chr4 112284210 112284737 -43345383 + Lx8 LINE L1 6740 7278 -195 2 1441 1060 303 56 28 chr4 112284785 112285179 -43344941 + MTD LTR MaLR 1 405 -14 2 1441 272 320 6 22 chr4 112285319 112285501 -43344619 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1441 384 205 12 0 chr4 112286851 112286934 -43343186 + L1MA5 LINE L1 5877 5960 -340 2 1441 253 221 31 10 chr4 112287062 112287158 -43342962 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1441 246 236 109 20 chr4 112287159 112287306 -43342814 + Lx9 LINE L1 7477 7636 -8 2 1441 288 208 38 0 chr4 112287636 112287689 -43342431 + Lx8 LINE L1 7073 7127 -346 2 1441 664 307 7 0 chr4 112287949 112288089 -43342031 + B3 SINE B2 6 146 -70 2 1441 887 262 51 0 chr4 112288107 112288321 -43341799 + URR1B DNA MER1_type 1 225 0 2 1441 1443 281 105 26 chr4 112289756 112290688 -43339432 - Lx7 LINE L1 -1411 6285 5259 2 1441 7783 66 1 5 chr4 112290666 112291695 -43338425 - L1Md_F2 LINE L1 -15 6567 5537 2 1441 3706 220 75 50 chr4 112291702 112292591 -43337529 - L1Md_F2 LINE L1 -608 5272 4365 2 1441 414 0 0 0 chr4 112292591 112292637 -43337483 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2 1441 3706 220 75 50 chr4 112292637 112292866 -43337254 - L1Md_F2 LINE L1 -1516 4364 4126 2 1441 2573 249 102 24 chr4 112292856 112294179 -43335941 - L1Md_F2 LINE L1 -4183 1697 277 2 1441 190 116 47 0 chr4 112294505 112294548 -43335572 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1441 402 412 36 42 chr4 112294548 112294933 -43335187 - Lx8 LINE L1 -128 7345 6963 3 1441 294 258 20 49 chr4 112294966 112295068 -43335052 - Lx8 LINE L1 -661 6812 6714 3 1441 944 183 37 0 chr4 112295055 112295219 -43334901 - Lx4A LINE L1 -105 6953 6784 3 1441 1657 181 49 7 chr4 112295223 112295529 -43334591 - ORR1A2 LTR MaLR -8 319 1 3 1441 726 163 16 0 chr4 112295529 112295652 -43334468 - Lx4A LINE L1 -270 6788 6664 3 1441 751 118 7 7 chr4 112298079 112298215 -43331905 + (GA)n Simple_repeat Simple_repeat 1 136 0 3 1441 1558 305 10 14 chr4 112298876 112299292 -43330828 - MTD LTR MaLR -5 414 1 3 1441 880 131 14 28 chr4 112299305 112299446 -43330674 - B1_Mus1 SINE Alu -8 140 2 3 1441 2240 210 135 31 chr4 112299872 112300486 -43329634 + RMER6C LTR ERVK 1 678 -12 3 1441 6421 180 23 98 chr4 112300630 112301602 -43328518 - L1_Mur1 LINE L1 -629 5257 4272 3 1441 830 70 0 17 chr4 112301602 112301718 -43328402 - B1_Mus1 SINE Alu -1 147 34 3 1441 358 224 130 20 chr4 112301648 112301748 -43328372 - MT2B LTR ERVL -344 257 147 3 1441 6421 180 23 98 chr4 112301748 112301799 -43328321 - L1_Mur1 LINE L1 -629 4271 4219 3 1441 369 0 0 0 chr4 112301799 112301840 -43328280 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1441 6421 180 23 98 chr4 112301840 112302291 -43327829 - L1_Mur1 LINE L1 -1668 4218 3761 3 1441 328 167 0 40 chr4 112302311 112302386 -43327734 + Lx2 LINE L1 6918 6989 -8 3 1441 4716 130 6 71 chr4 112302510 112304482 -43325638 + L1Md_T LINE L1 616 2326 -3560 3 1441 11268 32 0 0 chr4 112304498 112305837 -43324283 + L1Md_T LINE L1 4248 5586 -297 3 1441 8088 43 1 8 chr4 112305838 112306839 -43323281 + L1Md_T LINE L1 5588 6581 -1 3 1441 25219 58 3 1 chr4 112306839 112310108 -43320012 + L1_Mm LINE L1 2310 5586 -297 3 1441 7840 46 5 1 chr4 112310108 112311087 -43319033 + L1Md_F3 LINE L1 5587 6569 -15 3 1441 414 322 27 43 chr4 112312585 112312770 -43317350 + RMER15 LTR ERVL 352 533 -42 3 1441 1444 345 72 55 chr4 112312821 112314069 -43316051 + RMER15-int LTR ERVL 30 1298 -3701 3 1441 647 352 59 22 chr4 112314333 112314655 -43315465 + RMER15-int LTR ERVL 1585 1918 -3081 3 1441 292 113 14 114 chr4 112315121 112315191 -43314929 - B1_Mus2 SINE Alu -1 146 84 3 1441 657 305 35 5 chr4 112315201 112315402 -43314718 + RMER15-int LTR ERVL 4233 4439 -560 3 1441 393 294 85 35 chr4 112315976 112316117 -43314003 + RMER15 LTR ERVL 412 559 -16 3 1441 375 297 49 53 chr4 112316139 112316384 -43313736 + L1MA4 LINE L1 5596 5839 -461 3 1441 282 307 0 22 chr4 112317089 112317179 -43312941 + (CATA)n Simple_repeat Simple_repeat 4 91 0 3 1441 1092 28 7 14 chr4 112317187 112317333 -43312787 + (GGGAGA)n Simple_repeat Simple_repeat 4 148 0 3 1441 315 0 0 0 chr4 112317889 112317924 -43312196 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1441 1552 161 22 4 chr4 112318698 112318967 -43311153 + Lx LINE L1 6332 6605 -49 3 1441 574 86 0 0 chr4 112318967 112319048 -43311072 - BGLII LTR ERVK 0 421 341 3 1441 276 294 91 48 chr4 112319048 112319234 -43310886 + Lx8 LINE L1 7267 7460 -13 3 1441 239 211 78 60 chr4 112319236 112319352 -43310768 + Lx7 LINE L1 7579 7696 0 3 1441 297 295 26 43 chr4 112319835 112319952 -43310168 + URR1B DNA MER1_type 111 225 0 3 1441 699 304 41 7 chr4 112320113 112320404 -43309716 + L1MB3 LINE L1 5846 6146 -37 3 1441 231 286 41 143 chr4 112320869 112321016 -43309104 + L2a LINE L2 3268 3399 -27 3 1441 225 135 17 103 chr4 112321912 112321970 -43308150 + Tigger12 DNA MER2_type 1172 1224 -735 3 1441 423 0 0 0 chr4 112322656 112322703 -43307417 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1441 3325 158 7 9 chr4 112322802 112323370 -43306750 - Lx4A LINE L1 -265 6793 6227 3 1441 1030 264 103 23 chr4 112323494 112323804 -43306316 + RLTR18B LTR ERVK 177 511 -1 3 1441 1246 269 33 28 chr4 112323837 112324235 -43305885 + RLTR18-int LTR ERVK 3 402 -4959 3 1441 2576 262 69 37 chr4 112324456 112324604 -43305516 + RLTR18-int LTR ERVK 2096 2234 -3127 3 1441 898 206 162 36 chr4 112324604 112324967 -43305153 + RLTR9E LTR ERVK 1 409 0 3 1441 2576 262 69 37 chr4 112324967 112325659 -43304461 + RLTR18-int LTR ERVK 2235 2963 -2398 3 1441 2007 255 35 15 chr4 112326333 112326855 -43303265 + RLTR18-int LTR ERVK 4163 4694 -667 3 1441 201 39 0 0 chr4 112326945 112326971 -43303149 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 1441 6838 198 31 12 chr4 112326976 112327486 -43302634 - Lx2 LINE L1 -19 6978 6466 3 1441 2232 119 53 58 chr4 112327486 112327897 -43302223 - RLTR9E LTR ERVK 0 409 1 3 180 6838 184 17 19 chr4 112327897 112329158 -43300962 - Lx2 LINE L1 -532 6465 5189 3 1442 2265 198 30 2 chr4 112329156 112329622 -43300498 + Lx2 LINE L1 4740 5218 -659 3 1442 298 267 51 8 chr4 112329622 112329739 -43300381 + RLTR18-int LTR ERVK 5235 5356 -5 3 1442 991 267 23 19 chr4 112329740 112330000 -43300120 + RLTR18B LTR ERVK 1 261 -251 3 1442 2361 254 50 5 chr4 112330010 112330587 -43299533 - Lx5 LINE L1 -2 7048 6446 3 1442 644 134 73 73 chr4 112330588 112330725 -43299395 - Lx5 LINE L1 -1291 5759 5623 3 1442 431 204 32 0 chr4 112330730 112330823 -43299297 + Lx4B LINE L1 6581 6676 -382 3 1442 1761 281 25 6 chr4 112330963 112331436 -43298684 - Lx5 LINE L1 -598 6452 5971 3 1442 398 211 27 103 chr4 112331442 112331571 -43298549 + RLTR18B LTR ERVK 187 297 -215 3 1442 403 278 22 36 chr4 112331561 112331699 -43298421 + RMER10B LTR ERVL 201 336 -62 3 1442 2034 224 107 2 chr4 112331954 112332947 -43297173 + L1_Mur2 LINE L1 885 2006 -3871 3 1442 530 147 60 0 chr4 112333001 112333117 -43297003 + Lx LINE L1 6532 6654 0 3 1442 33 43 0 0 chr4 112333537 112333584 -43296536 + AT_rich Low_complexity Low_complexity 1 47 0 3 1442 231 139 0 0 chr4 112333900 112333936 -43296184 - L1_Mur1 LINE L1 -520 5366 5331 3 1442 4880 135 18 0 chr4 112333936 112334699 -43295421 + Lx3_Mus LINE L1 6215 6991 -18 3 1442 25 51 0 0 chr4 112334711 112334750 -43295370 + AT_rich Low_complexity Low_complexity 1 39 0 3 1442 502 281 10 59 chr4 112335127 112335331 -43294789 + MYSERV-int LTR ERVK 3824 4017 -2533 3 1442 342 0 0 0 chr4 112335332 112335370 -43294750 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 1442 983 106 0 12 chr4 112335416 112335579 -43294541 - L1_Mur1 LINE L1 -1011 4875 4715 3 1442 3673 73 2 98 chr4 112335580 112336154 -43293966 - MURVY-LTR LTR ERV1 0 519 1 3 1442 298 87 0 14 chr4 112336154 112336211 -43293909 - RLTR6-int LTR ERV1 0 7778 7737 3 1442 10702 296 43 38 chr4 112336413 112340788 -43289332 - RLTR6-int LTR ERV1 -2126 5652 1255 3 1442 358 24 0 0 chr4 112340817 112340858 -43289262 - L1Md_T LINE L1 -26 5857 5817 3 1442 6232 25 0 1 chr4 112340858 112341621 -43288499 + L1Md_T LINE L1 5863 6582 0 3 1442 1264 292 50 86 chr4 112341621 112342745 -43287375 - RLTR6-int LTR ERV1 -4052 1011 3 3 1442 3866 66 36 0 chr4 112342745 112343246 -43286874 - MURVY-LTR LTR ERV1 0 519 1 3 1442 16057 172 34 20 chr4 112343246 112346763 -43283357 - L1_Mur1 LINE L1 -1169 4717 1154 3 1442 234 261 62 0 chr4 112346765 112346830 -43283290 - L1VL4 LINE L1 -5601 701 633 3 1442 22 0 0 0 chr4 112347696 112347718 -43282402 + AT_rich Low_complexity Low_complexity 1 22 0 3 1442 1532 301 89 83 chr4 112347828 112348681 -43281439 + RMER13A LTR ERVK 1 858 -2 3 1442 283 183 29 41 chr4 112349577 112349748 -43280372 + (TATG)n Simple_repeat Simple_repeat 2 170 0 3 1442 546 389 5 16 chr4 112349751 112349944 -43280176 - B4A SINE B4 0 292 102 3 1442 665 287 33 23 chr4 112350307 112350610 -43279510 + L1_Rod LINE L1 5535 5840 -7 3 1442 2282 210 25 97 chr4 112350946 112351742 -43278378 - L1_Mur3 LINE L1 -1520 4357 3619 3 1442 473 331 74 8 chr4 112351734 112351978 -43278142 - L1_Mur3 LINE L1 -7320 408 149 3 1442 6219 157 282 10 chr4 112351981 112353446 -43276674 + L1_Mm LINE L1 3753 5615 -268 3 1442 495 277 58 137 chr4 112353521 112353931 -43276189 - RMER13B LTR ERVK -57 851 474 3 1442 988 227 21 18 chr4 112353934 112354292 -43275828 - L1_Mur2 LINE L1 -6412 1300 876 3 1442 3350 294 86 17 chr4 112354576 112354946 -43275174 - Lx9 LINE L1 -8 7636 7237 3 1442 738 132 0 0 chr4 112354946 112355105 -43275015 + (CTAGT)n Simple_repeat Simple_repeat 5 163 0 3 1442 3350 303 78 21 chr4 112355105 112356352 -43273768 - Lx9 LINE L1 -408 7236 5821 3 1442 182 128 0 41 chr4 112356354 112356403 -43273717 + T-rich Low_complexity Low_complexity 2 48 0 3 1442 2452 39 16 3 chr4 112356417 112356727 -43273393 - L1Md_F3 LINE L1 -1 6583 6270 3 1442 3960 261 65 69 chr4 112356727 112357233 -43272887 - Lx9 LINE L1 -67 5780 5280 3 1442 1066 76 21 0 chr4 112357233 112357377 -43272743 + B1_Mus2 SINE Alu 1 147 0 3 1442 3960 261 65 69 chr4 112357377 112358176 -43271944 - Lx9 LINE L1 -568 5279 4457 3 1442 2745 104 13 2 chr4 112358176 112358572 -43271548 - MTB LTR MaLR 0 400 1 3 1442 3960 261 65 69 chr4 112358572 112359205 -43270915 - Lx9 LINE L1 -1391 4456 3849 3 1442 1435 246 28 8 chr4 112359746 112360106 -43270014 - ORR1B2 LTR MaLR 0 367 1 3 1442 539 214 8 63 chr4 112360132 112360272 -43269848 + B1_Mus1 SINE Alu 7 131 -16 3 1442 2112 182 44 10 chr4 112360272 112360678 -43269442 + Lx2 LINE L1 5411 5830 -53 3 1442 3213 36 0 0 chr4 112360672 112361059 -43269061 - L1Md_F2 LINE L1 -341 5542 5156 3 1442 7679 49 12 0 chr4 112361059 112362018 -43268102 + L1Md_F2 LINE L1 5612 6582 0 3 1442 2548 227 22 2 chr4 112362018 112362601 -43267519 + Lx2 LINE L1 5817 6411 -586 3 1442 1017 236 8 33 chr4 112362601 112362842 -43267278 - RLTR15 LTR ERVK -124 235 1 3 1442 756 325 24 0 chr4 112363657 112363866 -43266254 + MTE2a LTR MaLR 19 232 -147 3 1442 3444 30 0 128 chr4 112363979 112364479 -43265641 + RLTR10C LTR ERVK 1 436 0 3 1442 2103 45 11 4 chr4 112364479 112364744 -43265376 + MMERVK10C-int LTR ERVK 1 267 -7314 3 1442 238 208 0 40 chr4 112364820 112364895 -43265225 + A-rich Low_complexity Low_complexity 3 74 0 3 1442 312 111 0 0 chr4 112364895 112364940 -43265180 + RLTR10-int LTR ERVK 93 137 -6405 3 1442 1927 17 9 4 chr4 112364943 112365176 -43264944 + RLTR10-int LTR ERVK 652 885 -1102 3 1442 1798 47 0 4 chr4 112365145 112365378 -43264742 + MMERVK10C-int LTR ERVK 3512 3743 -3838 3 1442 8663 42 0 0 chr4 112365371 112366392 -43263728 + MMERVK10C-int LTR ERVK 4790 5810 -1771 3 1442 8138 34 0 0 chr4 112366378 112367314 -43262806 + MMERVK10C-int LTR ERVK 6646 7581 0 3 1442 3420 32 0 128 chr4 112367314 112367814 -43262306 + RLTR10C LTR ERVK 1 436 0 3 1442 2867 130 54 6 chr4 112367856 112368335 -43261785 - Lx2B LINE L1 -501 6499 5998 3 1442 583 274 12 23 chr4 112368354 112368526 -43261594 - Lx3C LINE L1 -2 6974 6805 3 1442 3802 112 39 12 chr4 112368558 112369154 -43260966 - L1_Mus3 LINE L1 -6 6632 6021 3 1442 10746 178 28 8 chr4 112369154 112371350 -43258770 - L1_Mur2 LINE L1 -574 5303 3064 3 1442 4291 159 75 22 chr4 112371364 112371811 -43258309 - RMER17A2 LTR ERVK -11 895 412 3 1442 1302 56 0 0 chr4 112371811 112371991 -43258129 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1442 4291 159 75 22 chr4 112371991 112372393 -43257727 - RMER17A2 LTR ERVK -495 411 1 3 1442 8336 172 53 15 chr4 112372393 112372672 -43257448 - L1VL4 LINE L1 -841 2718 2443 3 1442 306 0 0 0 chr4 112372672 112372706 -43257414 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1442 8336 191 51 23 chr4 112372706 112374851 -43255269 - L1VL4 LINE L1 -1117 2442 222 3 1442 465 133 0 0 chr4 112374988 112375063 -43255057 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 1442 183 80 0 0 chr4 112375308 112375333 -43254787 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1442 489 97 0 0 chr4 112375404 112375476 -43254644 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1442 21 0 0 0 chr4 112375479 112375500 -43254620 + AT_rich Low_complexity Low_complexity 1 21 0 3 1442 837 38 0 0 chr4 112375615 112375720 -43254400 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 1442 454 335 0 6 chr4 112375747 112375912 -43254208 - Lx9 LINE L1 -215 7429 7266 3 1442 529 188 195 23 chr4 112376011 112376185 -43253935 + RMER4B LTR ERVK 11 214 -371 3 1442 757 288 31 37 chr4 112376239 112376564 -43253556 - RLTR15 LTR ERVK -36 323 1 3 1442 343 292 28 9 chr4 112376750 112376857 -43253263 + RMER4B LTR ERVK 343 451 -134 3 1442 322 315 27 7 chr4 112377049 112377199 -43252921 - Lx9 LINE L1 -594 7050 6898 3 1442 638 266 20 27 chr4 112377212 112377359 -43252761 - B1_Mur3 SINE Alu -3 146 1 3 1442 332 308 68 23 chr4 112377359 112377386 -43252734 - B4A SINE B4 -204 88 56 3 1442 26 64 0 0 chr4 112379095 112379142 -43250978 + AT_rich Low_complexity Low_complexity 1 47 0 3 1442 826 303 79 5 chr4 112379145 112379523 -43250597 + L1_Mur3 LINE L1 5334 5739 -141 3 1442 7336 196 29 120 chr4 112379530 112382484 -43247636 + Lx3A LINE L1 4189 6979 -79 3 1442 21 36 0 0 chr4 112382488 112382516 -43247604 + AT_rich Low_complexity Low_complexity 1 28 0 3 1442 267 234 15 15 chr4 112382516 112382581 -43247539 + ORR1D1 LTR MaLR 306 370 -4 4 1442 867 281 37 113 chr4 112382594 112382947 -43247173 + ORR1D1-int LTR MaLR 9 334 -1036 4 1442 688 309 15 5 chr4 112383044 112383239 -43246881 - B3A SINE B2 -1 197 1 4 1442 236 266 101 77 chr4 112383714 112383922 -43246198 + Lx9 LINE L1 7410 7622 -22 4 1442 746 297 23 9 chr4 112384773 112384987 -43245133 - Lx6 LINE L1 -27 7433 7217 4 1442 1755 172 65 55 chr4 112384983 112385456 -43244664 + L1_Mur3 LINE L1 2737 3214 -2666 4 1442 231 36 0 0 chr4 112385580 112385608 -43244512 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4 1442 2736 91 0 0 chr4 112386255 112386628 -43243492 + L1_Mus1 LINE L1 6195 6567 0 4 1442 1052 89 0 0 chr4 112386648 112386783 -43243337 + B1_Mm SINE Alu 1 135 -12 4 1442 318 26 0 0 chr4 112386784 112386823 -43243297 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1442 493 222 44 120 chr4 112387406 112387631 -43242489 + Lx7 LINE L1 7489 7696 0 4 1442 873 78 0 0 chr4 112387881 112387996 -43242124 + Lx LINE L1 6241 6355 -299 4 1442 406 151 0 44 chr4 112387996 112388086 -43242034 + Lx LINE L1 6569 6654 0 4 1442 447 19 0 0 chr4 112388890 112388942 -43241178 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1442 1141 305 69 9 chr4 112388963 112389400 -43240720 - Lx8 LINE L1 -181 7292 6830 4 1442 326 286 52 69 chr4 112389474 112389647 -43240473 - L1MEd LINE L1 -5124 995 826 4 1442 26 50 0 0 chr4 112389781 112389821 -43240299 + AT_rich Low_complexity Low_complexity 1 40 0 4 1442 460 357 52 0 chr4 112389830 112389984 -43240136 - B3A SINE B2 -36 162 1 4 1442 12946 128 14 35 chr4 112390653 112393651 -43236469 + L1VL4 LINE L1 196 3065 -494 4 1442 760 234 55 119 chr4 112393651 112393995 -43236125 + RLTRETN_Mm LTR ERVK 1 322 0 4 1442 3634 136 32 104 chr4 112393999 112394788 -43235332 + MMETn-int LTR ERVK 3 734 -4110 4 1442 3406 170 24 13 chr4 112394941 112396220 -43233900 + MMETn-int LTR ERVK 2356 4085 -3321 4 1442 1156 117 9 67 chr4 112396215 112396425 -43233695 + MMETn-int LTR ERVK 2960 3157 -1687 4 1442 6413 127 20 8 chr4 112396524 112397455 -43232665 + ETnERV2-int LTR ERVK 6227 7169 -237 4 1442 565 237 239 41 chr4 112397456 112397799 -43232321 + RLTR13D6 LTR ERVK 127 537 -365 4 1442 420 167 0 49 chr4 112397799 112397881 -43232239 + ETnERV2-int LTR ERVK 7329 7406 0 4 1442 475 202 0 0 chr4 112397917 112398016 -43232104 + L1_Mur3 LINE L1 3848 3946 -1934 4 1442 6944 148 16 1 chr4 112398019 112399658 -43230462 + Lx LINE L1 4987 6651 -3 4 1442 2554 123 55 0 chr4 112400654 112401053 -43229067 - BGLII LTR ERVK 0 421 1 4 1442 2075 123 41 6 chr4 112402716 112403060 -43227060 + RLTR15 LTR ERVK 1 356 -3 4 1442 482 183 205 92 chr4 112404136 112404365 -43225755 + MYSERV6-int LTR ERVK 6406 6660 -2299 4 1442 234 281 19 135 chr4 112404365 112404521 -43225599 + RLTR25A LTR ERVK 446 583 -520 4 1442 495 212 20 0 chr4 112404449 112404548 -43225572 + B1_Mur3 SINE Alu 43 143 -6 4 1442 383 235 10 58 chr4 112404601 112404705 -43225415 + RLTR18-int LTR ERVK 4751 4849 -512 4 1442 637 192 8 46 chr4 112405141 112405272 -43224848 + B1_Mur3 SINE Alu 18 143 -6 4 1442 691 283 0 10 chr4 112405465 112405658 -43224462 + MYSERV16_I-int LTR ERVK 22 212 -2114 4 1442 2694 44 8 39 chr4 112405666 112406022 -43224098 + ORR1A0 LTR MaLR 1 345 -1 4 1442 559 45 1 1 chr4 112406022 112406095 -43224025 - MT2C_Mm LTR ERVL -418 75 1 4 1442 4866 254 56 78 chr4 112406096 112406366 -43223754 + MYSERV16_I-int LTR ERVK 217 478 -1848 4 1442 690 44 0 0 chr4 112406366 112406456 -43223664 + (GGAAA)n Simple_repeat Simple_repeat 3 92 0 4 1442 4866 254 56 78 chr4 112406456 112408338 -43221782 + MYSERV16_I-int LTR ERVK 479 2320 -6 4 1442 269 159 0 0 chr4 112408345 112408389 -43221731 + RLTR15 LTR ERVK 4 47 -312 4 1442 544 209 0 61 chr4 112408402 112408550 -43221570 + MYSERV16_I-int LTR ERVK 255 393 -1933 4 1442 367 222 62 86 chr4 112408550 112408678 -43221442 - RLTR15 LTR ERVK -218 141 17 4 1442 1689 191 49 5 chr4 112408684 112409074 -43221046 + L1_Mur2 LINE L1 2057 2463 -3414 4 1442 21588 96 16 8 chr4 112409075 112412881 -43217239 + L1Md_F2 LINE L1 420 4255 -1628 4 1442 5975 76 6 2 chr4 112412881 112413674 -43216446 + L1Md_F2 LINE L1 5787 6582 0 4 1442 627 189 8 0 chr4 112413695 112413817 -43216303 + Lx5 LINE L1 2450 2572 -3305 4 1442 183 42 0 0 chr4 112414259 112414283 -43215837 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1442 367 209 11 11 chr4 112414360 112414452 -43215668 + L1M5 LINE L1 5352 5443 -721 4 1442 6047 211 50 14 chr4 112414448 112416048 -43214072 + Lx5 LINE L1 2581 4238 -1639 4 1442 5904 234 31 11 chr4 112416051 112417972 -43212148 + Lx5 LINE L1 5071 7043 -7 4 1442 300 27 0 0 chr4 112418746 112418783 -43211337 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1442 641 324 29 0 chr4 112418794 112418967 -43211153 - B3A SINE B2 -18 180 3 4 1442 336 265 148 0 chr4 112419614 112419776 -43210344 + L1ME3 LINE L1 5106 5291 -855 4 1442 332 274 28 19 chr4 112419787 112419960 -43210160 + L1ME3 LINE L1 5319 5494 -668 4 1442 362 100 0 16 chr4 112419999 112420060 -43210060 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1442 369 365 43 33 chr4 112420226 112420436 -43209684 + L1ME3 LINE L1 5951 6162 0 4 1442 24 32 0 0 chr4 112420573 112420604 -43209516 + AT_rich Low_complexity Low_complexity 1 31 0 4 1442 666 186 0 0 chr4 112421549 112421689 -43208431 + (TA)n Simple_repeat Simple_repeat 2 141 0 4 1442 290 226 35 62 chr4 112421784 112421897 -43208223 - Lx9 LINE L1 -26 7618 7509 4 1442 501 314 9 3 chr4 112421936 112422063 -43208057 - B1_Mur1 SINE Alu -13 136 9 4 1442 243 284 11 11 chr4 112422065 112422154 -43207966 - L1M3 LINE L1 -956 5184 5096 4 1442 239 309 25 0 chr4 112422200 112422281 -43207839 + Lx8 LINE L1 7049 7131 -342 4 1442 3148 189 91 24 chr4 112422287 112423885 -43206235 + L1VL4 LINE L1 550 2374 -3512 4 1442 30195 107 5 3 chr4 112423876 112430030 -43200090 + L1_Mus1 LINE L1 405 6565 -2 4 1442 10256 188 24 28 chr4 112430042 112432303 -43197817 + L1VL4 LINE L1 2355 4796 -1084 4 1442 4890 121 51 0 chr4 112432303 112433066 -43197054 - L1_Mus3 LINE L1 -2 6636 5835 4 1442 9778 226 155 25 chr4 112433066 112433297 -43196823 + L1VL4 LINE L1 4797 5226 -654 4 1442 270 0 0 0 chr4 112433297 112433327 -43196793 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1442 9778 226 155 25 chr4 112433327 112433912 -43196208 + L1VL4 LINE L1 5227 5831 -49 4 1442 991 220 32 12 chr4 112433910 112433970 -43196150 + Lx2 LINE L1 4577 4636 -1250 4 1442 255 61 0 0 chr4 112433970 112434003 -43196117 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1442 991 220 32 12 chr4 112434003 112434195 -43195925 + Lx2 LINE L1 4637 4834 -1052 4 1442 7481 53 13 0 chr4 112434192 112435137 -43194983 - L1Md_F3 LINE L1 -1 6583 5627 4 1442 8242 174 14 5 chr4 112435130 112437287 -43192833 + Lx2 LINE L1 4811 6997 0 4 1442 554 190 17 5 chr4 112437945 112438084 -43192036 + L1MA4 LINE L1 5793 5939 -361 4 1442 5674 166 38 9 chr4 112438217 112439364 -43190756 + MYSERV16_I-int LTR ERVK 1142 2322 -4 4 1442 2566 209 45 27 chr4 112439368 112439918 -43190202 + RLTR20B2 LTR ERVK 1 560 0 4 1442 271 173 40 0 chr4 112439918 112439993 -43190127 + (CAGA)n Simple_repeat Simple_repeat 3 80 0 4 1442 327 280 92 99 chr4 112440092 112440365 -43189755 + L1MC4 LINE L1 6890 7160 -882 4 1442 781 326 124 5 chr4 112440370 112440789 -43189331 + MER31A LTR ERV1 6 474 -11 4 1442 2791 203 138 30 chr4 112440978 112441673 -43188447 + Lx4B LINE L1 6253 7022 -36 4 1442 195 42 0 0 chr4 112441691 112441715 -43188405 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 4 1442 327 269 72 46 chr4 112442172 112442324 -43187796 + RMER5 LTR ERV1 33 188 -346 4 1442 519 256 115 35 chr4 112442365 112442539 -43187581 + B3A SINE B2 8 195 -3 4 1442 561 190 169 18 chr4 112442552 112442718 -43187402 + RMER5 LTR ERV1 220 410 -124 4 1442 592 130 217 0 chr4 112442807 112442922 -43187198 + Lx3A LINE L1 6830 6969 -12 4 1442 180 0 0 0 chr4 112442922 112442942 -43187178 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1442 832 306 8 29 chr4 112443269 112443508 -43186612 + B4A SINE B4 59 292 0 4 1442 482 197 8 0 chr4 112443513 112443645 -43186475 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 1442 456 314 73 47 chr4 112443694 112443995 -43186125 + L1M5 LINE L1 4352 4660 -1486 4 1442 267 230 0 47 chr4 112444046 112444110 -43186010 - PB1 SINE Alu -3 124 64 4 1442 1962 165 11 30 chr4 112444172 112444534 -43185586 + RLTR14 LTR ERV1 27 381 -1 4 1442 372 234 109 41 chr4 112447640 112447787 -43182333 - L1MA9 LINE L1 0 6312 6156 4 1442 666 297 83 8 chr4 112448036 112448340 -43181780 + ORR1E-int LTR MaLR 1024 1530 -50 4 1442 304 343 20 0 chr4 112448329 112448428 -43181692 + ORR1E LTR MaLR 7 107 -252 4 1442 3049 80 19 12 chr4 112448726 112449157 -43180963 - Lx3_Mus LINE L1 0 7009 6576 4 1442 384 348 62 5 chr4 112449299 112449507 -43180613 - MER2 DNA MER2_type 0 345 126 4 1442 206 96 96 0 chr4 112449577 112449650 -43180470 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1442 277 191 38 92 chr4 112449732 112449917 -43180203 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 4 1442 212 258 39 24 chr4 112449928 112450055 -43180065 + (TATAA)n Simple_repeat Simple_repeat 5 133 0 4 1442 330 216 33 66 chr4 112450122 112450305 -43179815 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 4 1442 249 294 0 29 chr4 112452966 112453036 -43177084 + ORR1E LTR MaLR 275 342 -37 4 1442 21 0 0 0 chr4 112453413 112453434 -43176686 + AT_rich Low_complexity Low_complexity 1 21 0 4 1442 335 274 105 84 chr4 112453616 112453807 -43176313 - ORR1E LTR MaLR 0 359 165 4 1442 198 0 0 0 chr4 112453927 112453949 -43176171 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1442 183 42 0 0 chr4 112454004 112454028 -43176092 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1442 2392 298 47 44 chr4 112454087 112454862 -43175258 + Lx6 LINE L1 6564 7340 -120 4 1442 24 0 0 0 chr4 112454921 112454945 -43175175 + AT_rich Low_complexity Low_complexity 1 24 0 4 1442 257 354 30 0 chr4 112455118 112455217 -43174903 + PB1D10 SINE Alu 3 104 -13 4 1442 258 56 0 0 chr4 112455375 112455411 -43174709 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1442 399 302 0 10 chr4 112455416 112455513 -43174607 - Lx8 LINE L1 -151 7322 7227 4 1442 291 28 0 0 chr4 112455555 112455591 -43174529 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1442 23 0 0 0 chr4 112456259 112456282 -43173838 + AT_rich Low_complexity Low_complexity 1 23 0 4 1442 332 306 0 0 chr4 112456438 112456559 -43173561 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1442 390 320 10 10 chr4 112456645 112456746 -43173374 - PB1D10 SINE Alu -8 109 9 4 1442 2810 197 37 3 chr4 112456767 112457618 -43172502 - L1_Mus2 LINE L1 -261 6393 5468 4 1442 734 108 0 0 chr4 112457617 112457719 -43172401 - L1_Mur2 LINE L1 -1307 4570 4469 4 1442 1128 97 74 0 chr4 112457716 112457891 -43172229 + L1_Mm LINE L1 3859 4046 -1837 4 1442 1375 191 27 0 chr4 112457888 112458144 -43171976 + Lx7 LINE L1 6848 7110 -586 4 180 3981 141 34 15 chr4 112459352 112460035 -43170085 + Lx LINE L1 5959 6654 0 4 1443 579 29 0 0 chr4 112460196 112460265 -43169855 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 4 1443 234 311 89 66 chr4 112460856 112461075 -43169045 + MIRb SINE MIR 34 261 -7 4 1443 197 108 0 26 chr4 112461897 112461935 -43168185 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1443 22 70 0 0 chr4 112462514 112462557 -43167563 + AT_rich Low_complexity Low_complexity 1 43 0 5 1443 679 279 7 0 chr4 112462579 112462719 -43167401 - RSINE1 SINE B4 -17 148 8 5 1443 229 333 34 11 chr4 112462780 112462868 -43167252 + MER5B DNA MER1_type 72 161 -17 5 1443 245 282 24 0 chr4 112463207 112463292 -43166828 + L1MA6 LINE L1 6075 6161 -139 5 1443 280 329 12 12 chr4 112464521 112464693 -43165427 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 1443 1109 89 0 11 chr4 112464694 112464876 -43165244 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1443 190 255 0 41 chr4 112464955 112465004 -43165116 + L2b LINE L2 3320 3366 -9 5 1443 382 368 89 28 chr4 112466145 112466615 -43163505 - Lx8 LINE L1 -47 7426 6928 5 1443 1475 303 114 61 chr4 112466710 112467596 -43162524 - Lx6 LINE L1 -16 7444 6296 5 1443 625 158 26 17 chr4 112467658 112467774 -43162346 - RLTR9A LTR ERVK 0 368 252 5 1443 3212 159 5 14 chr4 112467774 112468347 -43161773 - MURVY-int LTR ERV1 -6884 568 1 5 1443 2671 197 21 42 chr4 112468347 112468914 -43161206 - RLTR5_Mm LTR ERV1 0 628 74 5 1443 5342 144 58 40 chr4 112468944 112470283 -43159837 - ETnERV2-int LTR ERVK -2013 5231 3008 5 1443 3247 102 160 8 chr4 112470331 112471031 -43159089 + RLTR13D1 LTR ERVK 1 806 0 5 1443 902 178 22 27 chr4 112471034 112471219 -43158901 - ETnERV2-int LTR ERVK -3885 3521 3338 5 1443 8354 171 18 45 chr4 112471234 112473026 -43157094 - ETnERV2-int LTR ERVK -4236 3170 1426 5 1443 11469 139 40 8 chr4 112473037 112475693 -43154427 - L1_Mus3 LINE L1 -8 6630 3887 5 1443 1673 133 4 0 chr4 112475667 112475946 -43154174 - MusHAL1 LINE L1 -1302 1410 1131 5 1443 251 246 18 0 chr4 112475944 112476001 -43154119 - L1VL1 LINE L1 -6348 74 17 5 1443 1437 172 70 128 chr4 112476001 112476414 -43153706 - RLTR45-int LTR ERVK -4789 2455 2067 5 1443 456 19 0 0 chr4 112476414 112476467 -43153653 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1443 475 121 20 0 chr4 112476514 112476613 -43153507 + (TTTTA)n Simple_repeat Simple_repeat 4 104 0 5 1443 1660 153 49 63 chr4 112476925 112477274 -43152846 - RLTR9A LTR ERVK 0 368 25 5 1443 568 304 74 41 chr4 112477339 112477388 -43152732 - Lx6 LINE L1 -664 6796 6744 5 1443 486 0 0 0 chr4 112477388 112477442 -43152678 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1443 568 304 74 41 chr4 112477442 112477663 -43152457 - Lx6 LINE L1 -717 6743 6517 5 1443 2276 121 142 21 chr4 112477759 112478189 -43151931 + RLTR45 LTR ERVK 1 482 0 5 1443 25 51 0 0 chr4 112478274 112478313 -43151807 + AT_rich Low_complexity Low_complexity 1 39 0 5 1443 644 255 80 20 chr4 112479000 112479200 -43150920 - B3 SINE B2 0 216 5 5 1443 214 195 0 0 chr4 112479209 112479250 -43150870 + T-rich Low_complexity Low_complexity 1 41 0 5 1443 24 0 0 0 chr4 112479576 112479600 -43150520 + AT_rich Low_complexity Low_complexity 1 24 0 5 1443 227 127 15 45 chr4 112479761 112479827 -43150293 + GA-rich Low_complexity Low_complexity 4 67 0 5 1443 24 67 0 0 chr4 112479907 112479952 -43150168 + AT_rich Low_complexity Low_complexity 1 45 0 5 1443 862 84 24 12 chr4 112480027 112480196 -43149924 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 5 1443 358 316 143 13 chr4 112480572 112480726 -43149394 + MLT1D LTR MaLR 307 480 -25 5 1443 335 281 100 44 chr4 112480783 112481122 -43148998 + L1M3c LINE L1 1101 1458 -4683 5 1443 23 86 0 0 chr4 112481237 112481295 -43148825 + AT_rich Low_complexity Low_complexity 1 58 0 5 1443 955 278 34 0 chr4 112482285 112482580 -43147540 - RLTR18-int LTR ERVK -4977 384 80 5 1443 315 19 58 0 chr4 112482593 112482645 -43147475 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1443 957 325 50 18 chr4 112482730 112483326 -43146794 - RLTR18B LTR ERVK -80 536 4 5 1443 23 0 0 0 chr4 112483353 112483376 -43146744 + AT_rich Low_complexity Low_complexity 1 23 0 5 1443 244 175 0 0 chr4 112483376 112483416 -43146704 - B3 SINE B2 -171 45 6 5 1443 521 301 66 16 chr4 112485502 112485745 -43144375 + L1M3 LINE L1 5478 5732 -451 5 1443 475 309 86 17 chr4 112485981 112486271 -43143849 - L1MB3 LINE L1 -39 6144 5835 5 1443 2880 98 2 2 chr4 112487004 112487415 -43142705 - L1_Mus2 LINE L1 0 6566 6156 5 1443 272 231 64 0 chr4 112487426 112487504 -43142616 - Lx7 LINE L1 -4 7692 7610 5 1443 315 49 0 0 chr4 112487763 112487804 -43142316 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1443 33604 82 14 3 chr4 112488421 112494566 -43135554 - L1Md_F2 LINE L1 0 6582 366 5 1443 270 81 0 0 chr4 112494643 112494680 -43135440 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1443 405 0 0 0 chr4 112494923 112494968 -43135152 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1443 972 150 0 0 chr4 112495341 112495488 -43134632 - B1_Mus1 SINE Alu 0 148 2 5 1443 267 360 70 25 chr4 112495747 112495904 -43134216 - RMER15 LTR ERVL -22 553 390 5 1443 387 320 86 45 chr4 112496412 112496680 -43133440 - RMER15-int LTR ERVL -566 4433 4155 5 1443 385 236 0 130 chr4 112496902 112496936 -43133184 + MT2B LTR ERVL 138 152 -449 5 1443 958 71 0 0 chr4 112496936 112497062 -43133058 + B1_Mm SINE Alu 1 126 -21 5 1443 726 12 0 0 chr4 112497062 112497070 -43133050 + (GAA)n Simple_repeat Simple_repeat 1 8 0 5 1443 1329 73 0 0 chr4 112497070 112497248 -43132872 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 1443 726 12 0 0 chr4 112497248 112497324 -43132796 + (GAA)n Simple_repeat Simple_repeat 3 78 0 5 1443 287 250 38 0 chr4 112497724 112497804 -43132316 - RMER15-int LTR ERVL -3324 1675 1593 5 1443 9771 105 9 1 chr4 112497814 112500000 -43130120 - L1_Mus1 LINE L1 0 6567 4365 5 1443 19389 144 17 25 chr4 112500000 112504253 -43125867 - L1Md_F LINE L1 -1519 4364 145 1 1443 2553 176 27 35 chr4 112504417 112504935 -43125185 + Lx3B LINE L1 6122 6635 -338 2 1443 5052 147 12 6 chr4 112504935 112505773 -43124347 + Lx LINE L1 5809 6651 -3 3 1443 755 306 148 31 chr4 112505805 112506290 -43123830 - RMER15-int LTR ERVL -3585 1414 873 4 1443 396 340 65 51 chr4 112507055 112507272 -43122848 - RMER15 LTR ERVL -19 556 337 4 1443 4137 288 18 14 chr4 112507314 112508658 -43121462 - MurERV4-int LTR ERVK -2961 2299 951 5 1443 332 373 7 0 chr4 112508735 112508877 -43121243 - RMER15-int LTR ERVL -3474 1525 1383 4 1443 688 300 37 46 chr4 112508905 112509254 -43120866 - MurERV4-int LTR ERVK -3993 1267 922 6 1443 23 54 0 0 chr4 112509663 112509700 -43120420 + AT_rich Low_complexity Low_complexity 1 37 0 7 1443 868 267 65 52 chr4 112509819 112510206 -43119914 - MurERV4-int LTR ERVK -2008 3252 2861 8 1443 567 220 0 0 chr4 112510383 112510515 -43119605 + CT-rich Low_complexity Low_complexity 1 132 0 9 1443 929 149 0 0 chr4 112510517 112510665 -43119455 - B1_Mus1 SINE Alu 0 148 1 1 1443 4633 293 52 43 chr4 112510672 112512919 -43117201 - MurERV4-int LTR ERVK -2041 3219 953 1 1443 624 298 75 59 chr4 112513533 112513904 -43116216 - MurERV4-int LTR ERVK -2023 3237 2861 1 1443 423 0 0 0 chr4 112514088 112514135 -43115985 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1443 870 167 0 0 chr4 112514135 112514279 -43115841 - B1_Mus1 SINE Alu -4 144 1 1 1443 5011 304 40 33 chr4 112514290 112516410 -43113710 - MurERV4-int LTR ERVK -2041 3219 1082 1 1443 285 0 0 62 chr4 112516410 112516458 -43113662 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1443 5011 304 40 33 chr4 112516458 112516618 -43113502 - MurERV4-int LTR ERVK -4179 1081 922 1 1443 521 310 71 54 chr4 112517257 112517625 -43112495 - MurERV4_19-int LTR ERVK -2645 3135 2762 1 1443 288 77 0 0 chr4 112517815 112517854 -43112266 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1443 904 139 7 7 chr4 112517854 112517999 -43112121 - B1_Mus1 SINE Alu -3 145 1 1 1443 4560 305 41 36 chr4 112518010 112518405 -43111715 - MurERV4-int LTR ERVK -2041 3219 2811 2 1443 195 42 0 0 chr4 112518405 112518429 -43111691 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1443 4560 305 41 36 chr4 112518429 112520276 -43109844 - MurERV4-int LTR ERVK -2450 2810 965 2 1443 1824 158 47 86 chr4 112520594 112521003 -43109117 + RLTR9C LTR ERVK 1 393 0 2 1443 769 267 77 54 chr4 112521337 112521686 -43108434 - MurERV4-int LTR ERVK -2043 3217 2861 2 1443 4367 317 40 31 chr4 112521885 112521898 -43108222 - MurERV4-int LTR ERVK -2021 3239 3227 2 1443 731 190 7 26 chr4 112521898 112522049 -43108071 - B1_Mus1 SINE Alu 0 148 1 2 1443 4367 317 40 31 chr4 112522049 112522445 -43107675 - MurERV4-int LTR ERVK -2034 3226 2807 2 1443 236 0 91 0 chr4 112522445 112522489 -43107631 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1443 4367 317 40 31 chr4 112522489 112524374 -43105746 - MurERV4-int LTR ERVK -2454 2806 924 2 1443 425 290 43 84 chr4 112524983 112525301 -43104819 - MurERV4-int LTR ERVK -2002 3258 3109 2 1443 558 79 0 0 chr4 112525560 112525636 -43104484 + (TTTA)n Simple_repeat Simple_repeat 4 79 0 2 1443 756 154 15 7 chr4 112525637 112525774 -43104346 - B1_Mus1 SINE Alu -6 142 5 2 1443 4271 307 43 35 chr4 112525785 112526179 -43103941 - MurERV4-int LTR ERVK -2041 3219 2805 3 1443 183 42 0 0 chr4 112526179 112526203 -43103917 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1443 4271 307 43 35 chr4 112526203 112528032 -43102088 - MurERV4-int LTR ERVK -2456 2804 978 3 1443 807 275 71 52 chr4 112528822 112529190 -43100930 - MurERV4-int LTR ERVK -2025 3235 2861 3 1443 861 155 0 0 chr4 112529403 112529551 -43100569 - B1_Mus1 SINE Alu 0 148 1 3 1443 4139 309 52 39 chr4 112529568 112531181 -43098939 - MurERV4-int LTR ERVK -2041 3219 1583 3 1443 1566 52 0 0 chr4 112531181 112531372 -43098748 + B2_Mm1t SINE B2 1 191 -2 3 1443 4139 309 52 39 chr4 112531372 112532027 -43098093 - MurERV4-int LTR ERVK -3678 1582 922 3 1443 309 316 90 6 chr4 112532800 112532956 -43097164 - MurERV4-int LTR ERVK -2151 3109 2941 3 1443 348 211 0 0 chr4 112533206 112533282 -43096838 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 3 1443 850 163 7 0 chr4 112533282 112533429 -43096691 - B1_Mus1 SINE Alu 0 148 1 3 1443 4364 307 44 44 chr4 112533439 112535738 -43094382 - MurERV4-int LTR ERVK -2041 3219 922 3 1443 834 288 73 48 chr4 112536290 112536687 -43093433 - MurERV4-int LTR ERVK -1993 3267 2861 4 1443 838 162 0 0 chr4 112536900 112537048 -43093072 - B1_Mus1 SINE Alu 0 148 1 4 1443 4250 308 42 32 chr4 112537058 112539333 -43090787 - MurERV4-int LTR ERVK -2041 3219 922 4 1443 2035 298 56 39 chr4 112539944 112540925 -43089195 - MurERV4-int LTR ERVK -2002 3258 2261 4 1443 2779 165 22 4 chr4 112540925 112541435 -43088685 + Lx3_Mus LINE L1 6044 6562 -447 4 1443 280 351 36 29 chr4 112541438 112541576 -43088544 - RMER13B LTR ERVK -4 904 766 4 1443 1259 190 28 4 chr4 112541609 112541863 -43088257 + Lx3_Mus LINE L1 6742 7001 -8 4 1443 2857 304 36 55 chr4 112541877 112543250 -43086870 - MurERV4-int LTR ERVK -2993 2267 921 4 1443 417 330 35 30 chr4 112543298 112543498 -43086622 - RMER15-int LTR ERVL -3475 1524 1324 4 1443 5951 286 43 30 chr4 112543787 112546108 -43084012 - MurERV4-int LTR ERVK -1990 3270 920 4 1443 420 383 0 0 chr4 112546184 112546346 -43083774 - RMER15-int LTR ERVL -3506 1493 1332 4 1443 5580 285 46 33 chr4 112546666 112548967 -43081153 - MurERV4-int LTR ERVK -2002 3258 928 5 1443 285 407 10 10 chr4 112549020 112549221 -43080899 - RMER15-int LTR ERVL -3475 1524 1324 5 1443 5410 295 34 36 chr4 112549554 112550104 -43080016 - MurERV4-int LTR ERVK -2023 3237 2689 5 1443 3061 58 25 0 chr4 112550104 112550502 -43079618 - L1Md_F3 LINE L1 -14 6570 6163 5 1443 5410 295 34 36 chr4 112550502 112552272 -43077848 - MurERV4-int LTR ERVK -2572 2688 922 5 1443 2562 280 37 39 chr4 112552823 112553693 -43076427 - MurERV4-int LTR ERVK -2002 3258 2386 5 1443 230 0 33 0 chr4 112553693 112553723 -43076397 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1443 937 103 37 0 chr4 112553727 112553863 -43076257 - B1_Mus2 SINE Alu -5 142 2 5 1443 2562 280 37 39 chr4 112553863 112553987 -43076133 - MurERV4-int LTR ERVK -2875 2385 2261 5 1443 2437 199 14 2 chr4 112553987 112554500 -43075620 + Lx3_Mus LINE L1 6044 6562 -447 5 1443 2041 279 27 82 chr4 112554512 112555510 -43074610 - RMER17B LTR ERVK -9 899 6 5 1443 2369 158 16 9 chr4 112555511 112555957 -43074163 + Lx3_Mus LINE L1 6553 7001 -8 5 1443 3273 291 25 31 chr4 112555963 112557196 -43072924 - MurERV4-int LTR ERVK -2993 2267 1042 5 1443 27 73 0 0 chr4 112557209 112557264 -43072856 + AT_rich Low_complexity Low_complexity 1 55 0 6 1443 228 344 10 0 chr4 112557276 112557372 -43072748 - L1MC LINE L1 -1034 5112 5016 6 1443 333 322 17 7 chr4 112557402 112557560 -43072560 - L1M4 LINE L1 -1234 4906 4749 6 1443 233 274 118 12 chr4 112557670 112557755 -43072365 - L1M4 LINE L1 -1565 4575 4482 6 1443 20999 126 17 8 chr4 112557780 112559264 -43070856 - L1_Mus3 LINE L1 -10 6628 5126 6 1443 6670 41 11 5 chr4 112559264 112560102 -43070018 - L1Md_F3 LINE L1 -2 6582 5740 6 1443 20999 144 27 7 chr4 112560102 112562993 -43067127 - L1_Mus3 LINE L1 -758 5125 2176 6 1443 5375 286 54 38 chr4 112563001 112563179 -43066941 - MurERV4-int LTR ERVK -2001 3259 3091 6 1443 2758 48 0 12 chr4 112563179 112563515 -43066605 + IAPEY3_LTR LTR ERVK 1 332 0 6 1443 5375 286 54 38 chr4 112563515 112565599 -43064521 - MurERV4-int LTR ERVK -2170 3090 962 6 1443 302 408 11 0 chr4 112565678 112565869 -43064251 - RMER15-int LTR ERVL -3475 1524 1332 6 1443 5343 294 44 33 chr4 112566177 112568492 -43061628 - MurERV4-int LTR ERVK -1993 3267 928 6 1443 296 45 0 107 chr4 112568630 112568705 -43061415 + T-rich Low_complexity Low_complexity 6 72 0 6 1443 1144 69 7 0 chr4 112568705 112568850 -43061270 - B1_Mm SINE Alu 0 147 2 7 1443 459 305 0 0 chr4 112568862 112568980 -43061140 - RMER15-int LTR ERVL -3558 1441 1324 6 1443 5273 285 37 30 chr4 112569283 112569380 -43060740 - MurERV4-int LTR ERVK -1993 3267 3170 7 1443 1119 83 0 0 chr4 112569380 112569536 -43060584 + L1_Mus2 LINE L1 6411 6566 0 7 1443 5273 285 37 30 chr4 112569536 112571559 -43058561 - MurERV4-int LTR ERVK -2091 3169 1132 7 1443 5522 287 48 17 chr4 112572326 112574396 -43055724 - MurERV4-int LTR ERVK -3048 2212 79 7 1443 3781 90 13 4 chr4 112574406 112574932 -43055188 - L1_Mus4 LINE L1 -1 6635 6105 7 1443 914 275 46 65 chr4 112575066 112575541 -43054579 - RMER4A LTR ERVK 0 466 1 7 1443 1226 233 6 70 chr4 112576456 112576784 -43053336 + RMER12 LTR ERVK 1 307 -1015 7 1443 306 178 0 0 chr4 112576798 112576888 -43053232 + A-rich Low_complexity Low_complexity 1 90 0 7 1443 331 282 41 194 chr4 112577019 112577287 -43052833 + RLTR22_Mur LTR ERVK 486 712 -1136 7 1443 187 237 0 30 chr4 112577463 112577563 -43052557 + CT-rich Low_complexity Low_complexity 1 97 0 7 1443 372 288 113 66 chr4 112577564 112577776 -43052344 + RMER12 LTR ERVK 997 1218 -104 7 1443 545 268 89 20 chr4 112578861 112579063 -43051057 - RMER15-int LTR ERVL -3808 1191 976 8 1443 311 394 26 44 chr4 112579616 112579887 -43050233 - RMER15-int LTR ERVL -4638 361 96 8 1443 315 281 48 73 chr4 112579954 112580119 -43050001 - RMER15 LTR ERVL -43 532 372 8 1443 276 277 17 43 chr4 112580879 112580996 -43049124 - MurERV4-int LTR ERVK -1993 3267 3154 8 1443 5839 129 49 2 chr4 112580997 112582168 -43047952 + L1Md_F2 LINE L1 203 1435 -4448 8 1443 21393 91 8 5 chr4 112582167 112585215 -43044905 + L1Md_F2 LINE L1 2555 5611 -272 8 1443 6116 114 5 41 chr4 112585215 112586186 -43043934 + L1Md_F2 LINE L1 5647 6582 0 8 1443 786 273 9 0 chr4 112586186 112586406 -43043714 - MurERV4-int LTR ERVK -2101 3159 2938 8 1443 7393 202 75 12 chr4 112586432 112589458 -43040662 - Lx2 LINE L1 -1 6996 3765 8 1443 4720 122 24 59 chr4 112589456 112590460 -43039660 + L1_Mur1 LINE L1 2803 3776 -2110 8 1443 738 278 77 30 chr4 112590465 112590762 -43039358 - MurERV4-int LTR ERVK -2329 2931 2621 8 180 31 26 0 0 chr4 112590820 112590858 -43039262 + AT_rich Low_complexity Low_complexity 1 38 0 8 1444 949 297 97 65 chr4 112591458 112591655 -43038465 - L1MD1 LINE L1 -96 6146 5965 8 1444 2343 169 97 34 chr4 112591655 112592150 -43037970 - RLTR11A LTR ERVK -2 526 1 8 1444 949 297 97 65 chr4 112592150 112592655 -43037465 - L1MD1 LINE L1 -278 5964 5422 8 1444 347 328 45 98 chr4 112592927 112593059 -43037061 - PB1D10 SINE Alu -25 125 1 8 1444 863 73 16 0 chr4 112593075 112593198 -43036922 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 8 1444 15487 84 12 0 chr4 112593211 112595983 -43034137 - L1_Mus1 LINE L1 -1 6566 3762 9 1444 4218 25 12 0 chr4 112595983 112596470 -43033650 + MT2_Mm LTR ERVL 1 493 0 9 1444 47147 22 0 1 chr4 112596470 112601846 -43028274 + MERVL-int LTR ERVL 1 5371 -114 9 1444 364 125 26 53 chr4 112601846 112601922 -43028198 + ORR1A3-int LTR MaLR 567 640 -1323 9 1444 292 26 0 0 chr4 112601922 112601960 -43028160 + MERVL-int LTR ERVL 5448 5485 0 9 1444 4167 31 12 0 chr4 112601960 112602447 -43027673 + MT2_Mm LTR ERVL 1 493 0 9 1444 18619 89 3 11 chr4 112602447 112605803 -43024317 - L1_Mus1 LINE L1 -2117 3766 441 9 1444 11715 124 2 15 chr4 112605818 112606612 -43023508 - L1VL1 LINE L1 -756 2942 2157 9 1444 3549 145 27 63 chr4 112606612 112607387 -43022733 + RMER17A LTR ERVK 5 751 0 9 1444 11715 139 21 40 chr4 112607387 112609455 -43020665 - L1VL1 LINE L1 -1542 2156 142 9 1444 6754 289 29 28 chr4 112609526 112611832 -43018288 - MurERV4-int LTR ERVK -2774 2486 185 9 1444 291 28 0 0 chr4 112611832 112611868 -43018252 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1444 3762 278 28 39 chr4 112611868 112612005 -43018115 - MurERV4-int LTR ERVK -5076 184 43 9 1444 1276 274 61 48 chr4 112612104 112612564 -43017556 - RMER4A LTR ERVK 0 466 1 9 1444 198 0 0 0 chr4 112613148 112613170 -43016950 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1444 390 298 9 0 chr4 112613491 112613595 -43016525 + RMER12 LTR ERVK 6 110 -1212 9 1444 4903 154 16 66 chr4 112613595 112614545 -43015575 + RLTR13D6 LTR ERVK 1 902 0 1 1444 822 265 43 130 chr4 112614551 112615265 -43014855 + RMER12 LTR ERVK 111 767 -1081 9 1444 393 22 0 0 chr4 112615349 112615395 -43014725 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 1 1444 1221 106 0 0 chr4 112615395 112615575 -43014545 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1444 277 82 20 20 chr4 112615577 112615627 -43014493 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 1 1444 348 267 99 11 chr4 112615702 112615870 -43014250 + RMER12 LTR ERVK 1072 1302 -20 9 1444 192 111 0 0 chr4 112615883 112615919 -43014201 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1444 26 82 0 0 chr4 112616225 112616286 -43013834 + AT_rich Low_complexity Low_complexity 1 61 0 1 1444 344 380 81 30 chr4 112616428 112616962 -43013158 - RMER15-int LTR ERVL -3067 1932 1372 1 1444 492 385 87 0 chr4 112617057 112617392 -43012728 - RMER15-int LTR ERVL -3760 1239 876 1 1444 614 13 13 0 chr4 112617638 112617713 -43012407 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1444 231 358 42 35 chr4 112618258 112618400 -43011720 - RMER15 LTR ERVL -96 479 337 1 1444 3801 260 34 26 chr4 112619104 112619792 -43010328 - MurERV4-int LTR ERVK -1993 3267 2566 1 1444 683 12 12 0 chr4 112619792 112619876 -43010244 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1444 3801 260 34 26 chr4 112619876 112620219 -43009901 - MurERV4-int LTR ERVK -2695 2565 2218 1 1444 249 57 0 0 chr4 112620219 112620254 -43009866 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1444 1047 102 0 39 chr4 112620260 112620413 -43009707 - B1_Mus1 SINE Alu 0 148 2 1 1444 3801 260 34 26 chr4 112620413 112620616 -43009504 - MurERV4-int LTR ERVK -3043 2217 2015 1 1444 807 31 0 0 chr4 112620625 112620723 -43009397 + (TTC)n Simple_repeat Simple_repeat 2 99 0 1 1444 241 322 0 32 chr4 112620862 112620955 -43009165 + MLT1A1 LTR MaLR 317 406 -2 1 1444 380 261 67 8 chr4 112620986 112621106 -43009014 + B1F SINE Alu 20 146 -3 1 1444 5704 268 46 24 chr4 112621126 112623082 -43007038 - MurERV4-int LTR ERVK -3258 2002 4 1 1444 337 215 109 27 chr4 112623157 112623267 -43006853 - RMER4B LTR ERVK -5 580 462 1 1444 22 0 0 0 chr4 112623646 112623668 -43006452 + AT_rich Low_complexity Low_complexity 1 22 0 1 1444 1136 297 73 53 chr4 112623685 112624304 -43005816 + RMER12 LTR ERVK 1 813 -591 1 1444 24 0 0 0 chr4 112624469 112624493 -43005627 + AT_rich Low_complexity Low_complexity 1 24 0 1 1444 611 269 65 77 chr4 112624512 112624822 -43005298 + RMER12 LTR ERVK 913 1218 -104 1 1444 230 229 0 0 chr4 112624842 112624890 -43005230 + RLTR21 LTR ERVK 1524 1571 -1 1 1444 913 341 55 9 chr4 112625582 112626017 -43004103 - RMER15-int LTR ERVL -3475 1524 1070 1 1444 317 398 12 29 chr4 112626641 112626887 -43003233 - RMER15-int LTR ERVL -4638 361 120 1 1444 1164 263 6 3 chr4 112628991 112629315 -43000805 - MurERV4-int LTR ERVK -1993 3267 2943 1 1444 851 210 48 0 chr4 112629315 112629482 -43000638 + L1VL2 LINE L1 64 238 -6097 1 1444 3433 139 3 2 chr4 112629477 112630097 -43000023 + MusHAL1 LINE L1 233 853 -1859 1 1444 36071 36 2 9 chr4 112630091 112635306 -42994814 + L1Md_T LINE L1 413 5586 -297 1 1444 8251 42 1 0 chr4 112635306 112636300 -42993820 + L1Md_T LINE L1 5587 6581 -1 1 1444 2595 144 2 17 chr4 112636324 112636798 -42993322 + MusHAL1 LINE L1 828 1294 -1418 1 1444 23 54 0 0 chr4 112638116 112638153 -42991967 + AT_rich Low_complexity Low_complexity 1 37 0 1 1444 255 61 0 0 chr4 112638335 112638368 -42991752 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1444 1178 61 0 0 chr4 112638368 112638515 -42991605 - B1_Mus1 SINE Alu 0 148 2 1 1444 403 204 31 31 chr4 112638520 112638616 -42991504 - PB1D7 SINE Alu 0 120 25 1 1444 11718 160 20 3 chr4 112640958 112643024 -42987096 + L1_Mm LINE L1 3754 5853 -30 1 1444 17414 195 23 4 chr4 112643026 112644036 -42986084 + Lx2 LINE L1 2108 3143 -2740 1 1444 180 27 53 26 chr4 112644036 112644074 -42986046 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 1444 17414 195 23 4 chr4 112644074 112645198 -42984922 + Lx2 LINE L1 3144 4291 -1592 1 1444 197 65 32 0 chr4 112645198 112645229 -42984891 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1444 17414 174 25 3 chr4 112645229 112647878 -42982242 + Lx2 LINE L1 4292 6996 -1 1 1444 28 29 0 0 chr4 112647908 112647943 -42982177 + AT_rich Low_complexity Low_complexity 1 35 0 1 1444 1133 78 0 6 chr4 112648003 112648170 -42981950 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1 1444 322 295 98 8 chr4 112648244 112648377 -42981743 + RMER12 LTR ERVK 1074 1218 -104 1 1444 324 346 78 0 chr4 112649274 112649453 -42980667 - RMER15-int LTR ERVL -3737 1262 1070 1 1444 2544 140 13 0 chr4 112649537 112649930 -42980190 - MTB LTR MaLR 0 400 3 1 1444 552 134 0 16 chr4 112650915 112651021 -42979099 - B1F2 SINE Alu -16 134 33 1 1444 285 270 56 56 chr4 112650927 112651088 -42979032 - ID_B1 SINE B4 -22 202 42 1 1444 317 398 20 37 chr4 112652877 112653122 -42976998 - RMER15-int LTR ERVL -4640 359 119 1 1444 1329 241 3 0 chr4 112654119 112654430 -42975690 - MurERV4-int LTR ERVK -1993 3267 2956 1 1444 35029 42 0 3 chr4 112654430 112659683 -42970437 + L1Md_T LINE L1 253 5589 -297 1 1444 8702 20 0 1 chr4 112659683 112660680 -42969440 + L1Md_T LINE L1 5590 6585 0 1 1444 23 33 0 0 chr4 112660680 112660710 -42969410 + AT_rich Low_complexity Low_complexity 1 30 0 1 1444 1027 218 31 8 chr4 112660710 112660969 -42969151 - MurERV4-int LTR ERVK -2292 2968 2704 1 1444 1374 247 66 0 chr4 112660992 112661357 -42968763 - MurERV4-int LTR ERVK -2611 2649 2261 1 1444 3053 289 21 22 chr4 112661355 112662317 -42967803 - MurERV4-int LTR ERVK -3138 2122 1162 1 1444 1427 244 74 52 chr4 112662323 112662346 -42967774 - MurERV4-int LTR ERVK -4744 516 499 1 1444 207 0 0 0 chr4 112662346 112662369 -42967751 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1444 1427 244 74 52 chr4 112662369 112662847 -42967273 - MurERV4-int LTR ERVK -4762 498 4 1 1444 1539 245 126 30 chr4 112662850 112663382 -42966738 - RMER4A LTR ERVK 0 585 3 1 1444 1562 264 27 15 chr4 112663467 112663948 -42966172 - MurERV4-int LTR ERVK -2897 2363 1877 1 1444 275 0 29 0 chr4 112663967 112664002 -42966118 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 1444 847 310 3 32 chr4 112664006 112664289 -42965831 - MurERV4-int LTR ERVK -3399 1861 1587 1 1444 3966 264 42 24 chr4 112664292 112665618 -42964502 - MurERV4-int LTR ERVK -3871 1389 40 1 1444 1117 273 25 36 chr4 112665713 112666184 -42963936 - RMER4A LTR ERVK 0 466 1 1 1444 12845 152 15 8 chr4 112666351 112669471 -42960649 - L1_Mus4 LINE L1 0 6636 3493 1 1444 239 222 28 0 chr4 112669472 112669544 -42960576 - L1_Mus4 LINE L1 -3778 2105 2032 1 1444 692 326 40 72 chr4 112669526 112670025 -42960095 - L1VL4 LINE L1 -5757 545 63 1 1444 381 344 25 20 chr4 112670406 112670605 -42959515 - RMER15-int LTR ERVL -561 4438 4239 1 1444 1340 103 0 0 chr4 112670784 112670968 -42959152 - L1_Mus1 LINE L1 -396 6171 5988 1 1444 2974 73 0 0 chr4 112670968 112671351 -42958769 + L1_Mus1 LINE L1 6185 6567 0 1 1444 1050 257 51 18 chr4 112671355 112671690 -42958430 + RMER12 LTR ERVK 5 337 -1511 1 1444 948 150 7 0 chr4 112671996 112672143 -42957977 - B1_Mus1 SINE Alu 0 148 1 1 1444 213 306 0 0 chr4 112672432 112672504 -42957616 + CT-rich Low_complexity Low_complexity 2 73 0 1 1444 498 231 80 98 chr4 112672504 112672729 -42957391 + RMER12 LTR ERVK 994 1214 -108 1 1444 583 351 65 16 chr4 112673423 112673730 -42956390 - RMER15-int LTR ERVL -3354 1645 1324 1 1444 265 289 56 0 chr4 112674906 112674996 -42955124 - RMER15 LTR ERVL -59 516 422 1 1444 21 0 0 0 chr4 112675390 112675411 -42954709 + AT_rich Low_complexity Low_complexity 1 21 0 1 1444 6958 268 25 9 chr4 112675796 112677862 -42952258 - MurERV4-int LTR ERVK -1993 3267 1169 1 1444 1015 221 44 70 chr4 112677864 112678163 -42951957 + RMER12 LTR ERVK 29 353 -1495 1 1444 252 0 0 0 chr4 112678163 112678191 -42951929 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1444 398 326 72 62 chr4 112678191 112678470 -42951650 + RMER12 LTR ERVK 354 808 -596 1 1444 403 358 73 19 chr4 112678903 112679219 -42950901 - RMER15-int LTR ERVL -3324 1675 1343 1 1444 490 350 107 6 chr4 112679291 112679636 -42950484 - RMER15-int LTR ERVL -3747 1252 873 1 1444 375 39 77 0 chr4 112679802 112679880 -42950240 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 1 1444 428 33 17 0 chr4 112679880 112679940 -42950180 - B1_Mur4 SINE Alu -1 149 89 1 1444 985 117 0 20 chr4 112680334 112680482 -42949638 - B1_Mus2 SINE Alu 0 147 3 1 1444 1427 194 19 7 chr4 112680984 112681294 -42948826 + BGLII LTR ERVK 132 440 -1 1 1444 685 219 0 43 chr4 112681659 112681869 -42948251 + RMER3D-int LTR ERVK 652 852 -1990 1 1444 340 257 35 0 chr4 112682002 112682115 -42948005 + RMER3D-int LTR ERVK 489 605 -2237 1 1444 2006 219 94 67 chr4 112682122 112682762 -42947358 + RMER3D-int LTR ERVK 1011 1667 -1175 1 1444 2315 221 126 7 chr4 112682792 112683626 -42946494 + MYSERV16_I-int LTR ERVK 1315 2247 -79 1 1444 2175 168 19 2 chr4 112683694 112684106 -42946014 + BGLII LTR ERVK 3 421 0 1 1444 2406 296 52 34 chr4 112684246 112685116 -42945004 - MurERV4-int LTR ERVK -2029 3231 2342 1 1444 339 85 0 0 chr4 112685116 112685163 -42944957 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1444 2406 296 52 34 chr4 112685163 112685609 -42944511 - MurERV4-int LTR ERVK -2919 2341 1892 1 1444 3394 314 23 34 chr4 112686154 112687911 -42942209 - MurERV4-int LTR ERVK -2601 2659 922 1 1444 20661 82 8 2 chr4 112688391 112692003 -42938117 - L1Md_F2 LINE L1 -2 6580 2949 1 1444 27407 57 1 18 chr4 112692003 112696211 -42933909 + L1Md_F LINE L1 511 4644 -1239 1 1444 4375 14 2 0 chr4 112696211 112696703 -42933417 + MT2_Mm LTR ERVL 1 493 0 1 1444 40609 15 14 0 chr4 112696703 112701990 -42928130 + MERVL-int LTR ERVL 1 5360 -125 1 1444 392 167 46 35 chr4 112701990 112702077 -42928043 + ORR1A3-int LTR MaLR 553 640 -1323 1 1444 314 0 0 0 chr4 112702077 112702115 -42928005 + MERVL-int LTR ERVL 5448 5485 0 1 1444 4375 14 2 0 chr4 112702115 112702607 -42927513 + MT2_Mm LTR ERVL 1 493 0 1 1444 7884 33 0 1 chr4 112702607 112703555 -42926565 + L1Md_A LINE L1 4640 5586 -297 1 1444 8390 34 0 0 chr4 112703555 112704551 -42925569 + L1Md_A LINE L1 5587 6582 0 1 1444 1876 109 7 3 chr4 112704551 112704836 -42925284 - L1Md_F2 LINE L1 -2920 2963 2678 1 1444 2986 51 11 0 chr4 112704840 112705213 -42924907 + L1Md_F LINE L1 535 911 -5608 1 1444 10296 76 6 1 chr4 112705214 112707484 -42922636 - L1Md_F2 LINE L1 -3210 2673 393 1 1444 358 377 16 33 chr4 112708135 112708379 -42921741 - RMER15-int LTR ERVL -4666 333 94 1 1444 302 343 52 17 chr4 112708422 112708594 -42921526 - RMER15 LTR ERVL -19 556 379 1 1444 1327 214 13 3 chr4 112709222 112709522 -42920598 + BGLII LTR ERVK 119 421 0 1 1444 548 265 0 43 chr4 112709891 112710100 -42920020 + RMER3D-int LTR ERVK 652 851 -1991 1 1444 466 124 0 0 chr4 112710234 112710315 -42919805 + RMER3D-int LTR ERVK 492 564 -2278 1 1444 1001 200 147 23 chr4 112710355 112710710 -42919410 + RMER3D-int LTR ERVK 1015 1413 -1429 1 1444 762 231 20 116 chr4 112710742 112711045 -42919075 + RMER3D-int LTR ERVK 1406 1679 -1163 1 1444 301 212 25 12 chr4 112711064 112711145 -42918975 + MYSERV16_I-int LTR ERVK 1306 1387 -939 1 1444 369 58 19 19 chr4 112711148 112711201 -42918919 + RMER3D-int LTR ERVK 512 564 -2278 1 1444 511 171 11 0 chr4 112711245 112711333 -42918787 + RMER3D-int LTR ERVK 1014 1102 -1740 1 1444 284 302 31 10 chr4 112711601 112711698 -42918422 - RMER15-int LTR ERVL -3793 1206 1108 1 1444 22705 141 23 11 chr4 112711854 112716261 -42913859 - L1Md_F LINE L1 -925 4958 502 1 1444 561 202 8 16 chr4 112716303 112716424 -42913696 + RMER3D-int LTR ERVK 1414 1533 -1309 1 1444 322 273 23 69 chr4 112716488 112716618 -42913502 + RMER3D-int LTR ERVK 1542 1665 -1177 1 1444 1969 246 69 55 chr4 112716655 112717556 -42912564 + RMER3D-int LTR ERVK 1930 2842 0 1 1444 1916 172 49 15 chr4 112717556 112717963 -42912157 + BGLII LTR ERVK 1 421 0 1 1444 1248 344 62 49 chr4 112718106 112718211 -42911909 - MurERV4-int LTR ERVK -2652 3128 3023 1 1444 239 0 32 0 chr4 112718211 112718242 -42911878 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 1444 3778 320 39 24 chr4 112718242 112720349 -42909771 - MurERV4-int LTR ERVK -2758 3022 907 1 1444 373 279 0 0 chr4 112720533 112720619 -42909501 - RMER15-int LTR ERVL -3582 1417 1332 1 1444 1399 179 4 7 chr4 112721222 112721498 -42908622 + BGLII LTR ERVK 147 421 0 1 180 538 252 0 43 chr4 112721871 112722078 -42908042 + RMER3D-int LTR ERVK 654 851 -1991 1 1445 1086 84 0 14 chr4 112722140 112722285 -42907835 + B1_Mus1 SINE Alu 5 147 -1 1 1445 198 103 0 0 chr4 112722287 112722316 -42907804 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1445 553 175 52 9 chr4 112722402 112722517 -42907603 + RMER3D-int LTR ERVK 486 605 -2237 1 1445 1506 234 106 17 chr4 112722524 112723004 -42907116 + RMER3D-int LTR ERVK 1011 1533 -1309 1 1445 429 236 48 48 chr4 112723029 112723176 -42906944 + RMER3D-int LTR ERVK 1532 1678 -1164 1 1445 1613 270 62 51 chr4 112723201 112723478 -42906642 + RMER3D-int LTR ERVK 1930 2200 -642 1 1445 273 39 59 0 chr4 112723478 112723529 -42906591 + (CAA)n Simple_repeat Simple_repeat 1 54 0 1 1445 1613 270 62 51 chr4 112723529 112724149 -42905971 + RMER3D-int LTR ERVK 2201 2836 -6 1 1445 1965 168 42 2 chr4 112724154 112724559 -42905561 + BGLII LTR ERVK 1 421 0 1 1445 2750 293 40 42 chr4 112724699 112726088 -42904032 - MurERV4-int LTR ERVK -2029 3231 1845 1 1445 460 288 46 75 chr4 112726088 112726328 -42903792 - RMER12 LTR ERVK 0 1322 1090 1 1445 4828 142 7 2 chr4 112726570 112727389 -42902731 - RLTR22_Mus LTR ERVK -985 823 1 1 1445 958 130 0 7 chr4 112728123 112728270 -42901850 + B1_Mus1 SINE Alu 3 148 0 1 1445 246 116 0 0 chr4 112728270 112728313 -42901807 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1445 452 216 0 30 chr4 112728329 112728429 -42901691 + B1_Mur4 SINE Alu 54 150 0 1 1445 198 71 0 0 chr4 112728429 112728457 -42901663 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1445 1175 153 0 0 chr4 112728495 112728685 -42901435 + B2_Mm2 SINE B2 1 190 -5 1 1445 4776 48 1 8 chr4 112728719 112729011 -42901109 - L1Md_F2 LINE L1 -539 6043 5754 2 1445 1514 53 0 0 chr4 112729011 112729198 -42900922 + B2_Mm1a SINE B2 2 188 -5 2 1445 4776 43 0 7 chr4 112729198 112729644 -42900476 - L1Md_F2 LINE L1 -130 5753 5308 2 1445 4308 70 2 2 chr4 112729644 112730205 -42899915 + L1Md_F2 LINE L1 6014 6574 -8 2 1445 572 172 34 8 chr4 112730219 112730336 -42899784 + RMER3D-int LTR ERVK 486 605 -2237 2 1445 1489 231 111 17 chr4 112730343 112730821 -42899299 + RMER3D-int LTR ERVK 1011 1533 -1309 2 1445 450 229 73 40 chr4 112730847 112730997 -42899123 + RMER3D-int LTR ERVK 1532 1686 -1156 2 1445 1372 253 133 8 chr4 112730999 112731609 -42898511 + MYSERV16_I-int LTR ERVK 1289 1974 -352 2 1445 30286 121 27 18 chr4 112731609 112737927 -42892193 - L1Md_F2 LINE L1 0 6582 213 2 1445 693 258 44 41 chr4 112737934 112738253 -42891867 + MYSERV16_I-int LTR ERVK 2516 2835 -7 2 1445 2143 156 24 5 chr4 112738260 112738673 -42891447 + BGLII LTR ERVK 1 421 0 2 1445 2402 315 36 25 chr4 112738812 112740185 -42889935 - MurERV4-int LTR ERVK -2029 3231 1845 2 1445 448 290 53 79 chr4 112740185 112740413 -42889707 - RMER12 LTR ERVK 0 1322 1101 2 1445 4904 138 5 2 chr4 112740658 112741479 -42888641 - RLTR22_Mus LTR ERVK -985 823 1 2 1445 493 357 13 9 chr4 112741480 112741706 -42888414 - MurERV4-int LTR ERVK -3411 1849 1623 2 1445 703 220 0 43 chr4 112741951 112742160 -42887960 + RMER3D-int LTR ERVK 652 851 -1991 2 1445 836 131 0 8 chr4 112742222 112742353 -42887767 + B1_Mm SINE Alu 5 134 -13 2 1445 486 33 0 0 chr4 112742353 112742413 -42887707 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 2 1445 538 181 38 0 chr4 112742502 112742607 -42887513 + RMER3D-int LTR ERVK 489 597 -2245 2 1445 1832 231 116 59 chr4 112742622 112742931 -42887189 + RMER3D-int LTR ERVK 1011 1367 -1475 2 1445 225 0 0 0 chr4 112742931 112742956 -42887164 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1445 1832 231 116 59 chr4 112742956 112743286 -42886834 + RMER3D-int LTR ERVK 1368 1685 -1157 2 1445 1413 264 110 22 chr4 112743307 112744186 -42885934 + RMER3D-int LTR ERVK 1311 2817 -25 2 1445 2068 168 24 2 chr4 112744207 112744619 -42885501 + BGLII LTR ERVK 1 421 0 2 1445 2142 296 32 17 chr4 112744759 112745748 -42884372 - MurERV4-int LTR ERVK -2029 3231 2228 2 1445 2809 72 3 5 chr4 112745753 112746133 -42883987 - L1Md_F2 LINE L1 0 6582 6204 2 1445 2150 102 0 0 chr4 112746133 112746436 -42883684 + L1Md_F2 LINE L1 5909 6211 -371 2 1445 382 318 42 75 chr4 112746807 112747048 -42883072 - RMER12 LTR ERVK 0 1322 1090 2 1445 5015 126 14 5 chr4 112747290 112748106 -42882014 - RLTR22_Mus LTR ERVK -985 823 1 2 1445 1781 316 23 11 chr4 112748106 112748811 -42881309 - MurERV4-int LTR ERVK -3410 1850 1138 2 1445 13491 56 6 1 chr4 112748844 112751206 -42878914 - L1Md_F2 LINE L1 -13 6569 4197 2 1445 465 19 0 0 chr4 112751206 112751260 -42878860 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1445 13491 63 6 2 chr4 112751260 112751323 -42878797 - L1Md_F2 LINE L1 -1687 4196 4134 2 1445 391 320 35 25 chr4 112751323 112751522 -42878598 - MurERV4-int LTR ERVK -4111 1149 949 2 1445 285 284 75 33 chr4 112751897 112752017 -42878103 - RMER15-int LTR ERVL -3792 1207 1083 2 1445 2941 84 25 5 chr4 112752715 112753120 -42877000 + L1Md_F2 LINE L1 6152 6564 -18 2 1445 225 0 0 0 chr4 112753267 112753292 -42876828 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1445 1422 255 29 72 chr4 112753301 112753787 -42876333 - RMER3D-int LTR ERVK -1161 1681 1217 2 1445 28760 150 13 22 chr4 112754064 112760231 -42869889 - L1_Mus2 LINE L1 -223 6343 245 2 1445 2074 330 29 20 chr4 112760239 112761350 -42868770 - MurERV4-int LTR ERVK -3137 2123 1003 2 1445 262 290 62 46 chr4 112761762 112761892 -42868228 - RMER15-int LTR ERVL -3789 1210 1079 2 1445 227 362 67 36 chr4 112762840 112763035 -42867085 - RMER15 LTR ERVL -21 554 354 2 1445 1432 142 34 38 chr4 112763642 112763935 -42866185 + BGLII LTR ERVK 130 421 0 2 1445 534 222 29 49 chr4 112764304 112764508 -42865612 + RMER3D-int LTR ERVK 652 851 -1991 2 1445 547 209 52 7 chr4 112764637 112764772 -42865348 + RMER3D-int LTR ERVK 486 626 -2216 2 1445 1762 236 94 65 chr4 112764762 112765397 -42864723 + RMER3D-int LTR ERVK 1012 1665 -1177 2 1445 2629 241 34 40 chr4 112765428 112766350 -42863770 + RMER3D-int LTR ERVK 1925 2840 -2 2 1445 1145 242 40 45 chr4 112766350 112766794 -42863326 + RMER3D-int LTR ERVK 2401 2842 0 2 1445 2227 176 12 0 chr4 112766794 112767210 -42862910 + BGLII LTR ERVK 1 421 0 2 1445 4036 321 27 24 chr4 112767354 112768426 -42861694 - MurERV4-int LTR ERVK -2033 3227 2149 2 1445 4361 60 18 5 chr4 112768426 112768998 -42861122 - L1Md_F2 LINE L1 -1 6581 6003 2 1445 4036 321 27 24 chr4 112768998 112770002 -42860118 - MurERV4-int LTR ERVK -3112 2148 1144 2 1445 418 360 50 35 chr4 112770298 112770641 -42859479 - RMER15-int LTR ERVL -4477 522 175 2 1445 247 323 51 36 chr4 112770796 112770934 -42859186 - RMER15 LTR ERVL -57 518 379 2 1445 3121 61 8 0 chr4 112770959 112771352 -42858768 - MTA_Mm LTR MaLR 0 396 1 2 1445 4478 151 28 83 chr4 112771921 112772880 -42857240 + RMER17A2 LTR ERVK 1 906 0 2 1445 21 36 0 0 chr4 112772884 112772912 -42857208 + AT_rich Low_complexity Low_complexity 1 28 0 2 1445 1446 138 54 0 chr4 112772975 112773236 -42856884 + BGLII LTR ERVK 147 421 0 2 1445 552 255 26 92 chr4 112773614 112773920 -42856200 + RMER3D-int LTR ERVK 655 940 -1902 2 1445 452 202 92 8 chr4 112773940 112774060 -42856060 + RMER3D-int LTR ERVK 476 605 -2237 2 1445 1816 219 99 70 chr4 112774070 112774717 -42855403 + RMER3D-int LTR ERVK 1014 1679 -1163 2 1445 2369 251 31 48 chr4 112774735 112775660 -42854460 + RMER3D-int LTR ERVK 1925 2834 -8 2 1445 2455 141 19 10 chr4 112775669 112776085 -42854035 + BGLII LTR ERVK 2 421 0 2 1445 2995 295 45 25 chr4 112776225 112776772 -42853348 - MurERV4-int LTR ERVK -2029 3231 2675 2 1445 4887 166 74 3 chr4 112776772 112777665 -42852455 + RMER17B LTR ERVK 3 958 0 2 1445 4082 307 28 21 chr4 112777665 112777991 -42852129 - MurERV4-int LTR ERVK -2586 2674 2334 2 1445 996 92 0 0 chr4 112777991 112778154 -42851966 + (TC)n Simple_repeat Simple_repeat 1 163 0 2 1445 4082 307 28 21 chr4 112778154 112779532 -42850588 - MurERV4-int LTR ERVK -2927 2333 952 2 1445 355 341 97 43 chr4 112779609 112780032 -42850088 - RMER15-int LTR ERVL -3475 1524 1079 2 1445 328 369 57 43 chr4 112780507 112780875 -42849245 - RMER15-int LTR ERVL -4477 522 150 2 1445 5412 31 2 0 chr4 112781577 112782267 -42847853 - L1Md_T LINE L1 0 6582 5943 2 1445 1586 181 24 26 chr4 112782438 112782779 -42847341 + BGLII LTR ERVK 82 421 0 2 1445 1823 254 72 105 chr4 112783156 112784217 -42845903 + RMER3D-int LTR ERVK 654 1679 -1163 2 1445 248 70 0 23 chr4 112784219 112784263 -42845857 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1445 1243 220 34 65 chr4 112784278 112784692 -42845428 + RMER3D-int LTR ERVK 1925 2325 -517 2 1445 232 284 0 59 chr4 112784860 112784961 -42845159 + CT-rich Low_complexity Low_complexity 3 97 0 2 1445 268 182 57 57 chr4 112785029 112785204 -42844916 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 2 1445 280 115 31 112 chr4 112785159 112785355 -42844765 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 2 1445 5033 304 38 49 chr4 112786271 112788353 -42841767 + RodERV21-int LTR ERV1 709 2767 -2224 2 1445 552 345 19 33 chr4 112788432 112788911 -42841209 + RodERV21-int LTR ERV1 3586 4057 -3034 2 1445 253 260 69 88 chr4 112789147 112789307 -42840813 + MuRRS4-int LTR ERV1 2245 2401 -2662 2 1445 386 349 29 29 chr4 112789671 112789984 -42840136 + RodERV21-int LTR ERV1 4004 4316 -3285 2 1445 323 199 9 34 chr4 112790386 112790499 -42839621 + RodERV21-int LTR ERV1 5671 5772 -1319 2 1445 717 344 57 73 chr4 112791004 112791741 -42838379 + RodERV21-int LTR ERV1 2911 3635 -1356 2 1445 364 181 31 31 chr4 112791742 112791839 -42838281 + RodERV21-int LTR ERV1 4697 4793 -198 2 1445 238 127 13 53 chr4 112792208 112792283 -42837837 + CT-rich Low_complexity Low_complexity 2 73 0 2 1445 622 52 41 0 chr4 112792369 112792466 -42837654 + (TCTA)n Simple_repeat Simple_repeat 3 103 0 2 1445 561 186 0 0 chr4 112792599 112792696 -42837424 + BGLII LTR ERVK 324 420 -1 2 1445 600 211 32 26 chr4 112792813 112792969 -42837151 - MurERV4-int LTR ERVK -2006 3254 3098 2 1445 2326 180 12 99 chr4 112793138 112793577 -42836543 + L1_Mus3 LINE L1 675 1084 -5532 2 1445 1043 104 7 0 chr4 112793577 112793721 -42836399 - B1_Mus1 SINE Alu -1 147 3 2 1445 27562 142 9 16 chr4 112793721 112796058 -42834062 + L1_Mus3 LINE L1 1084 3346 -2537 2 1445 219 36 0 0 chr4 112796058 112796086 -42834034 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1445 27562 134 12 2 chr4 112796086 112799002 -42831118 + L1_Mus3 LINE L1 3347 6297 -341 2 1445 3362 123 2 0 chr4 112799001 112799490 -42830630 + L1_Mus2 LINE L1 6077 6566 0 2 1445 3708 315 31 32 chr4 112799501 112800858 -42829262 - MurERV4-int LTR ERVK -2280 2980 1621 2 1445 3651 180 26 38 chr4 112800858 112801677 -42828443 + RMER17D2 LTR ERVK 1 809 0 2 1445 3708 315 31 32 chr4 112801677 112802313 -42827807 - MurERV4-int LTR ERVK -3640 1620 990 2 1445 322 309 48 8 chr4 112802719 112802843 -42827277 - RMER15-int LTR ERVL -3792 1207 1079 2 1445 324 368 67 48 chr4 112803324 112803681 -42826439 - RMER15-int LTR ERVL -4486 513 150 2 1445 1472 175 22 0 chr4 112804579 112804853 -42825267 + BGLII LTR ERVK 142 421 0 2 1445 731 203 5 48 chr4 112805228 112805435 -42824685 + RMER3D-int LTR ERVK 652 849 -1993 2 1445 521 122 55 11 chr4 112805566 112805657 -42824463 + RMER3D-int LTR ERVK 489 583 -2259 2 1445 1452 206 114 21 chr4 112805689 112806164 -42823956 + RMER3D-int LTR ERVK 1015 1533 -1309 2 1445 412 234 48 41 chr4 112806190 112806337 -42823783 + RMER3D-int LTR ERVK 1532 1679 -1163 2 1445 1990 237 127 18 chr4 112806347 112807276 -42822844 + MYSERV16_I-int LTR ERVK 1297 2326 0 2 1445 2219 157 27 10 chr4 112807276 112807687 -42822433 + BGLII LTR ERVK 2 419 -2 2 1445 4153 313 33 26 chr4 112807829 112810056 -42820064 - MurERV4-int LTR ERVK -2029 3231 991 2 1445 230 382 69 0 chr4 112811531 112811662 -42818458 - RMER15 LTR ERVL -19 556 417 2 1445 21 36 0 0 chr4 112812273 112812301 -42817819 + AT_rich Low_complexity Low_complexity 1 28 0 2 1445 1636 142 4 4 chr4 112812364 112812639 -42817481 + BGLII LTR ERVK 147 421 0 2 1445 510 207 94 111 chr4 112813004 112813292 -42816828 + RMER3D-int LTR ERVK 652 934 -1908 2 1445 410 193 24 12 chr4 112813451 112813535 -42816585 + RMER3D-int LTR ERVK 1014 1098 -1744 2 1445 35451 63 5 2 chr4 112813595 112819012 -42811108 - L1Md_F2 LINE L1 -6 6576 1142 2 1445 3949 106 0 3 chr4 112818990 112819566 -42810554 - L1Md_F2 LINE L1 -5519 1205 632 2 1445 3966 323 36 20 chr4 112819769 112820660 -42809460 - MurERV4-int LTR ERVK -2006 3254 2343 2 1445 540 0 0 0 chr4 112820660 112820720 -42809400 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1445 3966 323 36 20 chr4 112820720 112822032 -42808088 - MurERV4-int LTR ERVK -2918 2342 1016 2 1445 21 36 0 0 chr4 112824279 112824307 -42805813 + AT_rich Low_complexity Low_complexity 1 28 0 2 1445 370 230 42 24 chr4 112824344 112824509 -42805611 + BGLII LTR ERVK 119 286 -135 2 1445 692 221 26 0 chr4 112824623 112824777 -42805343 + BGLII LTR ERVK 241 398 -23 2 1445 534 234 0 75 chr4 112825152 112825351 -42804769 + RMER3D-int LTR ERVK 659 842 -2000 2 1445 337 214 33 67 chr4 112825498 112825618 -42804502 + RMER3D-int LTR ERVK 491 606 -2236 2 1445 1731 232 101 64 chr4 112825590 112826261 -42803859 + RMER3D-int LTR ERVK 984 1679 -1163 2 1445 1729 273 47 49 chr4 112826286 112827198 -42802922 + RMER3D-int LTR ERVK 1932 2841 -1 2 1445 1320 204 18 186 chr4 112827198 112827704 -42802416 + BGLII LTR ERVK 1 421 0 2 1445 3257 332 42 30 chr4 112827840 112830074 -42800046 - MurERV4-int LTR ERVK -2026 3234 973 2 1445 438 360 105 24 chr4 112830128 112830594 -42799526 - RMER15-int LTR ERVL -3417 1582 1079 2 1445 25 0 0 0 chr4 112832322 112832347 -42797773 + AT_rich Low_complexity Low_complexity 1 25 0 2 1445 579 242 35 50 chr4 112832367 112832502 -42797618 + BGLII LTR ERVK 147 284 -137 2 1445 2005 107 9 43 chr4 112832502 112832826 -42797294 - L1Md_F2 LINE L1 -13 6569 6257 2 1445 579 242 35 50 chr4 112832826 112832890 -42797230 + BGLII LTR ERVK 285 343 -78 2 1445 2624 89 3 0 chr4 112832890 112833249 -42796871 + L1Md_F2 LINE L1 5768 6127 -455 2 1445 719 183 56 0 chr4 112833260 112833402 -42796718 + BGLII LTR ERVK 272 421 0 2 1445 35768 42 1 8 chr4 112833435 112838643 -42791477 + L1Md_T LINE L1 442 5585 -298 2 1445 8271 41 0 0 chr4 112838644 112839639 -42790481 + L1Md_T LINE L1 5587 6581 -1 2 1445 554 259 0 44 chr4 112839971 112840177 -42789943 + RMER3D-int LTR ERVK 659 855 -1987 2 1445 619 272 144 48 chr4 112840427 112841035 -42789085 + RMER3D-int LTR ERVK 1014 1679 -1163 2 1445 2167 265 35 44 chr4 112841053 112841968 -42788152 + RMER3D-int LTR ERVK 1924 2830 -12 2 1445 2035 196 17 12 chr4 112841980 112842399 -42787721 + BGLII LTR ERVK 1 421 0 2 1445 394 222 19 0 chr4 112842538 112842646 -42787474 - MurERV4-int LTR ERVK -2029 3231 3122 2 1445 363 23 0 0 chr4 112842651 112842695 -42787425 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1445 291 93 0 85 chr4 112842697 112842744 -42787376 + L1_Mm LINE L1 3760 3802 -2081 2 1445 1514 59 0 10 chr4 112842754 112842960 -42787160 - L1Md_F3 LINE L1 -2 6582 6379 2 1445 1167 314 38 15 chr4 112842979 112843639 -42786481 - MurERV4-int LTR ERVK -2171 3089 2415 2 1445 378 0 0 0 chr4 112843681 112843723 -42786397 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1445 2610 324 26 23 chr4 112843729 112845038 -42785082 - MurERV4-int LTR ERVK -2932 2328 1016 2 1445 299 413 0 6 chr4 112845176 112845356 -42784764 - RMER15-int LTR ERVL -3475 1524 1346 2 1445 245 312 52 10 chr4 112846570 112846667 -42783453 - RMER15 LTR ERVL -60 515 415 2 1445 1806 277 42 46 chr4 112846777 112847697 -42782423 + RMER3D-int LTR ERVK 1925 2841 -1 2 1445 1458 213 17 140 chr4 112847697 112847820 -42782300 + BGLII LTR ERVK 1 126 -295 2 1445 261 0 0 0 chr4 112847820 112847849 -42782271 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 1445 1458 213 17 140 chr4 112847849 112848205 -42781915 + BGLII LTR ERVK 127 421 0 2 1445 3705 324 45 30 chr4 112848342 112850588 -42779532 - MurERV4-int LTR ERVK -2026 3234 956 2 1445 259 347 48 7 chr4 112852042 112852187 -42777933 - RMER15 LTR ERVL -43 532 382 2 180 1461 183 27 0 chr4 112852828 112853123 -42776997 + BGLII LTR ERVK 119 421 0 3 1446 594 228 9 56 chr4 112853497 112853711 -42776409 + RMER3D-int LTR ERVK 652 855 -1987 3 1446 633 274 55 65 chr4 112853962 112854583 -42775537 + RMER3D-int LTR ERVK 1014 1679 -1163 3 1446 2278 264 36 45 chr4 112854601 112855529 -42774591 + RMER3D-int LTR ERVK 1924 2842 0 3 1446 2008 199 17 12 chr4 112855529 112855941 -42774179 + BGLII LTR ERVK 1 414 -7 3 1446 3736 322 41 23 chr4 112856088 112856949 -42773171 - MurERV4-int LTR ERVK -2029 3231 2342 3 1446 321 47 0 0 chr4 112856949 112856992 -42773128 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1446 3736 322 41 23 chr4 112856992 112858322 -42771798 - MurERV4-int LTR ERVK -2919 2341 1003 3 1446 381 250 41 10 chr4 112858758 112858855 -42771265 - RMER15-int LTR ERVL -3792 1207 1108 2 1446 365 231 37 0 chr4 112860631 112860765 -42769355 + BGLII LTR ERVK 119 257 -164 3 1446 807 244 17 0 chr4 112860909 112861089 -42769031 + BGLII LTR ERVK 239 421 0 3 1446 516 237 20 44 chr4 112861456 112861659 -42768461 + RMER3D-int LTR ERVK 652 849 -1993 3 1446 483 198 54 0 chr4 112861797 112861908 -42768212 + RMER3D-int LTR ERVK 489 605 -2237 3 1446 422 197 13 0 chr4 112861918 112861994 -42768126 + RMER3D-int LTR ERVK 1014 1090 -1752 3 1446 1598 188 78 86 chr4 112862013 112862537 -42767583 + RMER3D-int LTR ERVK 1160 1679 -1163 3 1446 1893 261 39 53 chr4 112862555 112863486 -42766634 + RMER3D-int LTR ERVK 1924 2841 -1 3 1446 1887 177 36 15 chr4 112863486 112863898 -42766222 + BGLII LTR ERVK 1 421 0 3 1446 2457 309 48 26 chr4 112864035 112866265 -42763855 - MurERV4-int LTR ERVK -2029 3231 951 3 1446 428 374 65 30 chr4 112866341 112866769 -42763351 - RMER15-int LTR ERVL -3475 1524 1082 3 1446 263 353 40 40 chr4 112867747 112867924 -42762196 - RMER15 LTR ERVL -45 530 354 3 1446 587 14 0 14 chr4 112868236 112868309 -42761811 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1446 934 89 82 0 chr4 112868478 112868613 -42761507 + B1_Mm SINE Alu 2 147 0 3 1446 217 68 22 22 chr4 112868613 112868658 -42761462 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1446 1542 191 14 9 chr4 112868720 112869066 -42761054 + BGLII LTR ERVK 96 445 0 3 1446 376 200 0 56 chr4 112869445 112869535 -42760585 + RMER3D-int LTR ERVK 652 736 -2106 3 1446 428 198 56 19 chr4 112869748 112869856 -42760264 + RMER3D-int LTR ERVK 486 597 -2245 3 1446 1389 196 128 21 chr4 112869874 112870304 -42759816 + RMER3D-int LTR ERVK 1014 1489 -1353 3 1446 5297 106 1 3 chr4 112870315 112871064 -42759056 - L1_Mus1 LINE L1 -4 6563 5816 3 1446 9444 86 5 14 chr4 112871068 112872845 -42757275 - L1Md_F3 LINE L1 -404 6180 4425 3 1446 259 169 169 0 chr4 112872845 112872928 -42757192 + RMER3D-int LTR ERVK 2229 2325 -1 3 1446 2148 165 22 12 chr4 112872929 112873346 -42756774 + BGLII LTR ERVK 1 421 0 3 1446 1548 299 40 20 chr4 112873486 112874189 -42755931 - MurERV4-int LTR ERVK -2029 3231 2515 3 1446 3361 296 21 28 chr4 112874258 112875596 -42754524 - MurERV4-int LTR ERVK -2976 2284 956 3 1446 238 345 71 0 chr4 112877048 112877161 -42752959 - RMER15 LTR ERVL -43 532 412 3 1446 279 0 0 0 chr4 112877355 112877386 -42752734 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1446 28 0 0 0 chr4 112877797 112877825 -42752295 + AT_rich Low_complexity Low_complexity 1 28 0 3 1446 1487 179 20 0 chr4 112877860 112878157 -42751963 + BGLII LTR ERVK 119 421 0 3 1446 254 176 0 56 chr4 112878521 112878575 -42751545 + RMER3D-int LTR ERVK 652 702 -2140 3 1446 504 158 53 0 chr4 112878571 112878666 -42751454 + RMER3D-int LTR ERVK 497 596 -2246 3 1446 34925 50 1 3 chr4 112878718 112884153 -42745967 + L1Md_T LINE L1 69 5589 -297 3 1446 8227 45 0 0 chr4 112884153 112885149 -42744971 + L1Md_T LINE L1 5590 6585 0 3 1446 1572 207 11 21 chr4 112885244 112885619 -42744501 + RMER3D-int LTR ERVK 1163 1533 -1309 3 1446 407 225 66 58 chr4 112885654 112885791 -42744329 + RMER3D-int LTR ERVK 1542 1679 -1163 3 1446 1755 218 48 55 chr4 112885815 112886398 -42743722 + RMER3D-int LTR ERVK 1931 2509 -333 3 1446 3654 254 60 41 chr4 112886395 112886849 -42743271 - MurERV4-int LTR ERVK -3884 1376 907 3 1446 2437 130 39 8 chr4 112886849 112887237 -42742883 + MTB LTR MaLR 1 400 0 3 1446 3654 254 60 41 chr4 112887237 112887633 -42742487 - MurERV4-int LTR ERVK -4354 906 503 3 1446 207 0 0 0 chr4 112887633 112887656 -42742464 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1446 3654 254 60 41 chr4 112887656 112888020 -42742100 - MurERV4-int LTR ERVK -4758 502 138 3 1446 268 210 104 11 chr4 112888058 112888147 -42741973 + RMER12 LTR ERVK 447 534 -788 3 1446 237 322 67 17 chr4 112888159 112888279 -42741841 + RMER12 LTR ERVK 687 812 -592 3 1446 244 309 0 69 chr4 112888307 112888408 -42741712 + RLTR22_Mus LTR ERVK 603 696 -1112 3 1446 571 291 57 90 chr4 112888584 112888829 -42741291 + RMER12 LTR ERVK 982 1218 -104 3 1446 270 73 0 0 chr4 112889619 112889660 -42740460 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1446 204 200 35 70 chr4 112889768 112889854 -42740266 + A-rich Low_complexity Low_complexity 5 87 0 3 1446 22 88 0 0 chr4 112890045 112890102 -42740018 + AT_rich Low_complexity Low_complexity 1 57 0 3 1446 1101 78 0 14 chr4 112890116 112890260 -42739860 + B1_Mm SINE Alu 5 146 -1 3 1446 305 247 24 0 chr4 112890364 112890449 -42739671 + RMER17A-int LTR ERVK 1001 1087 -641 3 1446 987 293 82 58 chr4 112890881 112891330 -42738790 + RMER13A LTR ERVK 1 460 -400 3 1446 403 317 40 46 chr4 112891444 112891619 -42738501 - RMER15 LTR ERVL -65 510 337 3 1446 349 95 63 0 chr4 112892064 112892127 -42737993 + MERVL_2A-int LTR ERVL 5563 5629 -132 3 1446 353 125 26 53 chr4 112892127 112892203 -42737917 + ORR1A3-int LTR MaLR 567 640 -1323 3 1446 281 53 0 0 chr4 112892203 112892241 -42737879 + MERVL-int LTR ERVL 5448 5485 0 3 1446 3494 84 2 8 chr4 112892241 112892719 -42737401 + MT2C_Mm LTR ERVL 1 475 0 3 1446 977 251 42 28 chr4 112893044 112893437 -42736683 + BGLII_B LTR ERVK 16 422 0 3 1446 294 29 0 0 chr4 112893482 112893517 -42736603 + (CCA)n Simple_repeat Simple_repeat 2 36 0 3 1446 2560 309 57 6 chr4 112894828 112895813 -42734307 + MYSERV6-int LTR ERVK 452 1486 -7473 3 1446 1526 198 21 3 chr4 112895878 112896167 -42733953 + RLTR17 LTR ERVK 190 483 -209 3 1446 6862 85 25 2 chr4 112896176 112896462 -42733658 - L1_Mus1 LINE L1 0 6567 6281 3 1446 3368 33 3 0 chr4 112896462 112896854 -42733266 + MTA_Mm LTR MaLR 2 394 -2 3 1446 29063 122 18 3 chr4 112896854 112902425 -42727695 - L1_Mus1 LINE L1 -287 6280 619 3 1446 399 270 55 16 chr4 112902435 112902563 -42727557 + MYSERV16_I-int LTR ERVK 959 1091 -1235 3 1446 201 24 47 47 chr4 112902572 112902615 -42727505 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1446 1005 115 0 13 chr4 112902617 112902767 -42727353 - B1_Mus1 SINE Alu 0 148 1 3 1446 4397 226 26 19 chr4 112902767 112904010 -42726110 + MYSERV16_I-int LTR ERVK 1076 2326 0 3 1446 1331 269 60 8 chr4 112904014 112904415 -42725705 + BGLII_B LTR ERVK 2 423 -18 3 1446 841 325 124 2 chr4 112904428 112904577 -42725543 - RMER15-int LTR ERVL -3604 1395 1222 3 1446 504 0 0 0 chr4 112904577 112904633 -42725487 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1446 841 325 124 2 chr4 112904633 112904903 -42725217 - RMER15-int LTR ERVL -3778 1221 926 3 1446 1485 199 19 3 chr4 112905574 112905886 -42724234 - MurERV4-int LTR ERVK -2000 3260 2944 3 1446 214 263 13 26 chr4 112906733 112906811 -42723309 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 1446 28 48 0 0 chr4 112906913 112906955 -42723165 + AT_rich Low_complexity Low_complexity 1 42 0 3 1446 204 311 202 19 chr4 112907763 112908075 -42722045 - L2 LINE L2 -776 2643 2275 3 1446 583 343 86 76 chr4 112908118 112908381 -42721739 + MTD LTR MaLR 8 275 -144 3 1446 1192 48 0 7 chr4 112908381 112908528 -42721592 - B1_Mus2 SINE Alu -1 146 1 3 1446 583 343 86 76 chr4 112908528 112908658 -42721462 + MTD LTR MaLR 276 405 -14 3 1446 29 28 0 0 chr4 112909376 112909412 -42720708 + AT_rich Low_complexity Low_complexity 1 36 0 3 1446 22 35 0 0 chr4 112909584 112909613 -42720507 + AT_rich Low_complexity Low_complexity 1 29 0 3 1446 284 314 46 11 chr4 112909778 112909865 -42720255 + MER3 DNA MER1_type 6 95 -114 3 1446 7607 40 1 1 chr4 112911371 112912283 -42717837 + L1Md_F2 LINE L1 5651 6562 -20 3 1446 432 0 0 0 chr4 112912284 112912332 -42717788 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1446 465 313 41 5 chr4 112912821 112913039 -42717081 + L1MC LINE L1 5393 5618 -726 3 1446 441 252 81 0 chr4 112913040 112913151 -42716969 + Lx7 LINE L1 6792 6911 -785 3 1446 877 276 35 32 chr4 112913151 112913492 -42716628 + RLTR15 LTR ERVK 1 342 -17 3 1446 4008 120 48 25 chr4 112913586 112914253 -42715867 + Lx3_Mus LINE L1 6320 7001 -8 3 1446 356 230 47 23 chr4 112914441 112914570 -42715550 + Lx2B LINE L1 6866 6997 -3 3 1446 750 309 107 13 chr4 112915465 112915551 -42714569 + MYSERV6-int LTR ERVK 3815 3909 -2641 3 1446 972 180 0 46 chr4 112915551 112915767 -42714353 - Lx2 LINE L1 -3 6994 6789 3 1446 750 302 126 26 chr4 112915767 112916266 -42713854 + MYSERV6-int LTR ERVK 3910 4450 -2100 3 1446 495 0 0 0 chr4 112916266 112916321 -42713799 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1446 725 291 110 45 chr4 112916321 112916568 -42713552 + MYSERV6-int LTR ERVK 4451 4721 -1829 3 1446 392 223 10 0 chr4 112916576 112916679 -42713441 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1446 2772 249 35 66 chr4 112916737 112918145 -42711975 + MYSERV6-int LTR ERVK 7813 8572 -387 3 1446 201 158 0 0 chr4 112918145 112918183 -42711937 + A-rich Low_complexity Low_complexity 1 38 0 3 1446 4287 138 41 7 chr4 112918186 112918947 -42711173 + RLTR22_Mur LTR ERVK 25 811 -1037 3 1446 5675 173 13 27 chr4 112919143 112920361 -42709759 + Lx3C LINE L1 3185 4385 -1501 3 1446 6577 192 32 7 chr4 112920366 112922225 -42707895 + Lx3C LINE L1 5071 6965 -11 3 1446 477 90 0 0 chr4 112922231 112922298 -42707822 + (ATG)n Simple_repeat Simple_repeat 2 68 0 3 1446 1382 293 62 26 chr4 112922572 112923025 -42707095 + Lx6 LINE L1 6981 7449 -11 3 1446 458 104 0 0 chr4 112923033 112923100 -42707020 + L1_Mm LINE L1 3321 3387 -2496 3 1446 15879 153 33 71 chr4 112923098 112926839 -42703281 - L1Md_F LINE L1 -2045 3838 224 3 1446 12357 118 25 9 chr4 112926829 112929534 -42700586 + L1_Mus3 LINE L1 3890 6638 0 3 1446 2095 236 48 25 chr4 112929641 112930440 -42699680 + Lx5 LINE L1 1248 2068 -3812 3 1446 264 130 0 0 chr4 112930464 112930510 -42699610 + (CCA)n Simple_repeat Simple_repeat 1 46 0 3 1446 313 202 10 78 chr4 112930586 112930660 -42699460 + L1_Mur2 LINE L1 213 286 -6426 3 1446 2589 80 79 10 chr4 112930660 112931054 -42699066 + BGLII LTR ERVK 1 421 0 3 1446 313 202 10 78 chr4 112931054 112931081 -42699039 + L1_Mur2 LINE L1 287 307 -6405 3 1446 1537 181 31 0 chr4 112931105 112931478 -42698642 - L1_Mur2 LINE L1 -2621 1293 907 3 1446 424 217 79 94 chr4 112931481 112931608 -42698512 - B1_Mus2 SINE Alu -19 128 4 3 1446 612 310 49 91 chr4 112931608 112931873 -42698247 - MT2B LTR ERVL -339 262 10 3 1446 2675 216 40 14 chr4 112931901 112932521 -42697599 - ORR1B1-int LTR MaLR -1323 640 5 3 1446 1606 201 27 148 chr4 112932529 112932968 -42697152 - ORR1B1 LTR MaLR -8 386 1 3 1446 3698 242 150 32 chr4 112932977 112933093 -42697027 + Lx5 LINE L1 4303 4459 -1418 3 1446 3212 108 92 2 chr4 112933093 112933504 -42696616 + Lx3A LINE L1 6433 6889 -92 3 1446 594 68 0 0 chr4 112933504 112933592 -42696528 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1446 3212 108 92 2 chr4 112933592 112933681 -42696439 + Lx3A LINE L1 6890 6978 -3 3 1446 3698 254 132 26 chr4 112933681 112935399 -42694721 + Lx5 LINE L1 4460 6362 -688 3 1446 914 319 89 18 chr4 112935437 112935948 -42694172 + Lx5 LINE L1 6518 7434 -26 3 1446 855 317 68 45 chr4 112935980 112936380 -42693740 + Lx8 LINE L1 6890 7298 -175 3 1446 2648 130 16 39 chr4 112936392 112936902 -42693218 + RLTR1D LTR ERV1 1 589 -16 3 1446 243 0 0 0 chr4 112937254 112937281 -42692839 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 1446 938 321 50 15 chr4 112937314 112937715 -42692405 + Lx8 LINE L1 6362 6776 -697 3 1446 5396 193 89 16 chr4 112937717 112939281 -42690839 + L1_Mur1 LINE L1 14 2089 -3797 3 1446 407 19 19 0 chr4 112939281 112939333 -42690787 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1446 5396 169 156 1 chr4 112939333 112939869 -42690251 + L1_Mur1 LINE L1 2090 2627 -3259 3 1446 3543 87 8 46 chr4 112939970 112940532 -42689588 + L1_Mus2 LINE L1 6062 6566 0 3 1446 18279 115 13 1 chr4 112940532 112943408 -42686712 + Lx3_Mus LINE L1 1754 4663 -1223 3 1446 3890 140 19 3 chr4 112943409 112944048 -42686072 - L1_Mus4 LINE L1 -6 6630 5982 3 1446 323 169 45 30 chr4 112944048 112944115 -42686005 + Lx LINE L1 5931 5998 -656 3 1446 1186 178 4 9 chr4 112944097 112944329 -42685791 - L1_Mus4 LINE L1 -32 6604 6374 3 1446 1830 158 0 0 chr4 112944320 112944617 -42685503 + L1_Mus4 LINE L1 5989 6285 -351 3 1446 35982 34 7 9 chr4 112944611 112949758 -42680362 + L1Md_T LINE L1 449 5586 -297 4 1446 7885 47 16 4 chr4 112949759 112950742 -42679378 + L1Md_T LINE L1 5588 6582 0 4 1446 552 152 36 0 chr4 112950745 112950857 -42679263 + L1_Mus4 LINE L1 6270 6385 -251 3 1446 8753 111 20 4 chr4 112950862 112953166 -42676954 + Lx3_Mus LINE L1 4652 7001 -8 3 1446 352 238 0 0 chr4 112953366 112953450 -42676670 - L1_Mur3 LINE L1 -4478 1402 1319 4 1446 978 253 57 25 chr4 112953446 112953589 -42676531 + Lx7 LINE L1 1281 1417 -4463 4 1446 943 109 51 0 chr4 112953589 112953722 -42676398 + B1_Mus2 SINE Alu 3 142 -5 4 1446 261 0 0 0 chr4 112953722 112953751 -42676369 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1446 978 253 57 25 chr4 112953751 112954012 -42676108 + Lx7 LINE L1 1418 1694 -4186 4 1446 4818 238 65 21 chr4 112953983 112954924 -42675196 + Lx7 LINE L1 4106 5039 -841 4 1446 423 0 0 0 chr4 112954924 112954971 -42675149 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1446 4818 238 65 21 chr4 112954971 112955519 -42674601 + Lx7 LINE L1 5040 5659 -221 4 1446 492 18 0 0 chr4 112955549 112955606 -42674514 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1446 351 244 11 23 chr4 112955607 112955695 -42674425 + Lx7 LINE L1 6193 6279 -1417 4 1446 25 90 0 0 chr4 112957072 112957139 -42672981 + AT_rich Low_complexity Low_complexity 1 67 0 4 1446 514 355 18 0 chr4 112957139 112957305 -42672815 - B3 SINE B2 -1 215 47 4 1446 358 336 9 0 chr4 112957322 112957438 -42672682 - B3 SINE B2 -98 118 2 4 1446 397 377 30 12 chr4 112957716 112957885 -42672235 - Lx8 LINE L1 -220 7253 7082 4 1446 579 200 7 58 chr4 112958079 112958217 -42671903 - B1_Mur3 SINE Alu -1 148 18 4 1446 405 187 16 123 chr4 112958111 112958233 -42671887 - MT2B LTR ERVL -327 274 166 4 1446 21 57 0 0 chr4 112958399 112958434 -42671686 + AT_rich Low_complexity Low_complexity 1 35 0 4 1446 279 224 13 13 chr4 112958514 112958591 -42671529 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1446 23 0 0 0 chr4 112958622 112958645 -42671475 + AT_rich Low_complexity Low_complexity 1 23 0 4 1446 504 0 0 0 chr4 112958675 112958731 -42671389 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1446 420 360 35 5 chr4 112958763 112958964 -42671156 - Lx9 LINE L1 -223 7421 7215 4 1446 1121 82 0 14 chr4 112960219 112960367 -42669753 - B1_Mus1 SINE Alu -1 147 2 4 1446 305 196 0 0 chr4 112960703 112960759 -42669361 - ORR1B2 LTR MaLR 0 367 312 4 1446 6354 217 31 29 chr4 112960772 112961376 -42668744 - Lx5 LINE L1 -1 7049 6435 4 1446 1011 97 21 0 chr4 112961376 112961520 -42668600 + B1_Mus1 SINE Alu 1 147 -1 4 1446 6354 216 23 45 chr4 112961520 112963263 -42666857 - Lx5 LINE L1 -616 6434 4741 4 1446 22 0 0 0 chr4 112963367 112963389 -42666731 + AT_rich Low_complexity Low_complexity 1 22 0 4 1446 690 143 0 0 chr4 112963515 112963662 -42666458 + (TC)n Simple_repeat Simple_repeat 2 148 0 4 1446 423 0 0 0 chr4 112963663 112963710 -42666410 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1446 366 321 64 46 chr4 112963738 112964084 -42666036 + Lx7 LINE L1 5983 6334 -1362 4 1446 383 319 52 83 chr4 112964181 112964410 -42665710 - MT2A LTR ERVL -144 389 168 4 1446 1059 122 0 0 chr4 112964991 112965138 -42664982 + B1_Mus1 SINE Alu 1 147 -1 4 1446 24 32 0 0 chr4 112965222 112965253 -42664867 + AT_rich Low_complexity Low_complexity 1 31 0 4 1446 185 0 40 0 chr4 112965321 112965346 -42664774 + (CATCC)n Simple_repeat Simple_repeat 5 30 0 4 1446 288 0 0 0 chr4 112965450 112965482 -42664638 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1446 311 308 9 63 chr4 112965570 112965681 -42664439 - B3 SINE B2 -103 113 9 4 1446 477 0 0 0 chr4 112966112 112966165 -42663955 + (A)n Simple_repeat Simple_repeat 1 53 0 4 1446 307 310 103 21 chr4 112966165 112966310 -42663810 + MLT1E2 LTR MaLR 108 264 -363 4 1446 2627 89 6 0 chr4 112967674 112968033 -42662087 + L1_Mus1 LINE L1 6206 6566 -1 4 1446 416 350 110 47 chr4 112968187 112968631 -42661489 + L1M4c LINE L1 935 1406 -4978 4 1446 546 290 7 80 chr4 112968946 112969071 -42661049 + B1_Mus1 SINE Alu 3 125 -23 4 1446 285 51 0 0 chr4 112969071 112969110 -42661010 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1446 1024 96 0 0 chr4 112969112 112969247 -42660873 - B1_Mus2 SINE Alu -12 135 1 4 1446 546 290 7 80 chr4 112969247 112969268 -42660852 + B1_Mus1 SINE Alu 126 141 -7 4 1446 193 240 10 10 chr4 112969287 112969384 -42660736 + (TGG)n Simple_repeat Simple_repeat 3 99 0 4 1446 3548 186 11 27 chr4 112970032 112970765 -42659355 + RLTR22_Mur LTR ERVK 3 723 -1125 4 1446 11372 148 20 19 chr4 112970771 112971131 -42658989 + L1_Mm LINE L1 3483 3843 -2040 4 1446 369 43 0 0 chr4 112971131 112971178 -42658942 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1446 11372 148 20 19 chr4 112971178 112972888 -42657232 + L1_Mm LINE L1 3844 5553 -330 4 1446 3080 134 10 2 chr4 112972888 112973395 -42656725 + L1_Mus3 LINE L1 6121 6631 -7 4 1446 1673 155 19 102 chr4 112973396 112973806 -42656314 + RLTR22_Mur LTR ERVK 734 1109 -739 4 1446 1290 63 23 0 chr4 112973806 112973980 -42656140 - Lx3_Mus LINE L1 -1157 5852 5675 4 1446 1598 166 42 0 chr4 112973981 112974270 -42655850 + Lx3A LINE L1 6671 6971 -10 4 1446 24 0 0 0 chr4 112974274 112974298 -42655822 + AT_rich Low_complexity Low_complexity 1 24 0 4 1446 3251 195 55 6 chr4 112974346 112974550 -42655570 + RLTR22_Mur LTR ERVK 1125 1347 -501 4 1446 306 125 0 0 chr4 112974550 112974598 -42655522 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1446 3251 195 55 6 chr4 112974598 112975079 -42655041 + RLTR22_Mur LTR ERVK 1348 1843 -5 4 1446 3872 244 30 79 chr4 112975111 112975720 -42654400 + L1_Mus1 LINE L1 918 1495 -4382 4 1446 930 56 0 122 chr4 112975720 112975884 -42654236 - L1Md_F3 LINE L1 -14 6570 6427 4 1446 944 74 0 0 chr4 112975884 112976006 -42654114 + B1_Mm SINE Alu 18 139 -8 4 1446 253 0 26 26 chr4 112976006 112976044 -42654076 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1446 3872 204 51 123 chr4 112976044 112976591 -42653529 + L1_Mus1 LINE L1 1496 2085 -3792 4 1446 461 62 0 15 chr4 112976591 112976657 -42653463 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1446 3872 212 117 114 chr4 112976657 112977400 -42652720 + L1_Mus1 LINE L1 2058 3058 -2822 4 1446 767 233 0 0 chr4 112977402 112977578 -42652542 + L1_Mus1 LINE L1 4344 4519 -1358 4 1446 7007 89 19 0 chr4 112977611 112978610 -42651510 + L1_Mus1 LINE L1 5542 6567 0 4 1446 255 193 45 11 chr4 112978674 112978763 -42651357 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1446 5454 143 62 33 chr4 112978851 112980560 -42649560 - L1_Mur1 LINE L1 -3768 2118 3 4 1446 2445 220 23 45 chr4 112980794 112981366 -42648754 - Lx2B LINE L1 -3 6997 6439 4 1446 2474 82 90 3 chr4 112981366 112981722 -42648398 - MTA_Mm LTR MaLR 0 396 10 4 1446 577 257 13 0 chr4 112981724 112981876 -42648244 - Lx2B LINE L1 -557 6443 6290 4 1446 228 412 13 26 chr4 112981977 112982129 -42647991 + ORR1E LTR MaLR 50 199 -160 4 1446 21 36 0 0 chr4 112982611 112982639 -42647481 + AT_rich Low_complexity Low_complexity 1 28 0 4 1446 1426 259 38 3 chr4 112982640 112982981 -42647139 + Lx5 LINE L1 6697 7049 -1 4 1446 1344 72 0 0 chr4 112983208 112983388 -42646732 + L1_Mus1 LINE L1 6387 6566 -1 4 1446 832 108 20 26 chr4 112983408 112983560 -42646560 + L1_Mur1 LINE L1 4540 4690 -1196 4 180 3980 159 18 31 chr4 112983560 112984326 -42645794 - L1_Mur1 LINE L1 -1065 4812 4057 4 1447 3675 156 35 58 chr4 112984326 112985376 -42644744 + RLTR13D1 LTR ERVK 1 991 -32 4 1447 7654 174 27 6 chr4 112985382 112985824 -42644296 - L1_Mur1 LINE L1 -1956 3930 3489 4 1447 180 0 0 0 chr4 112985824 112985844 -42644276 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1447 7654 174 27 6 chr4 112985844 112986680 -42643440 - L1_Mur1 LINE L1 -2398 3488 2617 4 1447 366 23 0 0 chr4 112986680 112986723 -42643397 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1447 417 39 0 0 chr4 112986723 112986773 -42643347 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1447 7654 174 27 6 chr4 112986773 112987022 -42643098 - L1_Mur1 LINE L1 -3270 2616 2373 4 1447 4214 152 24 5 chr4 112987017 112988054 -42642066 - Lx LINE L1 -565 6089 5042 4 1447 5098 166 8 140 chr4 112988050 112989239 -42640881 + L1_Mur2 LINE L1 3751 4789 -1088 4 1447 1097 101 0 0 chr4 112989239 112989387 -42640733 + B1_Mus1 SINE Alu 1 148 0 4 1447 5098 166 8 140 chr4 112989387 112989544 -42640576 + L1_Mur2 LINE L1 4790 4920 -957 4 1447 184 273 60 15 chr4 112989962 112990029 -42640091 + L3 LINE CR1 4207 4276 -213 4 1447 396 0 0 0 chr4 112990603 112990647 -42639473 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1447 3135 131 131 32 chr4 112991342 112991482 -42638638 + RMER17A LTR ERVK 1 140 -611 4 1447 2058 137 49 79 chr4 112991482 112991887 -42638233 - RLTR9C LTR ERVK 0 393 1 4 1447 3135 131 131 32 chr4 112991887 112992083 -42638037 + RMER17A LTR ERVK 141 393 -358 4 1447 996 77 12 23 chr4 112992083 112992256 -42637864 + (TTC)n Simple_repeat Simple_repeat 1 171 0 4 1447 3135 131 131 32 chr4 112992256 112992598 -42637522 + RMER17A LTR ERVK 394 746 -5 4 1447 278 279 0 0 chr4 112992661 112992729 -42637391 + L1VL4 LINE L1 238 305 -5997 4 1447 3675 131 5 7 chr4 112992813 112993381 -42636739 + RMER2 LTR ERV1 1 567 0 4 1447 2361 97 3 24 chr4 112993962 112994331 -42635789 - L1Md_F2 LINE L1 -1 6581 6221 4 1447 3572 76 20 6 chr4 112994344 112994833 -42635287 + LTRIS2 LTR ERV1 69 564 0 4 1447 5132 39 0 0 chr4 112994833 112995445 -42634675 - L1Md_F2 LINE L1 -357 6225 5614 4 1447 5061 121 7 26 chr4 112996696 112997517 -42632603 - RLTR13D1 LTR ERVK 0 806 1 4 1447 269 242 116 39 chr4 112997554 112997683 -42632437 + MURVY-int LTR ERV1 3514 3652 -3800 4 1447 762 115 0 0 chr4 112997898 112998020 -42632100 + MusHAL1 LINE L1 656 777 -2577 4 1447 1103 124 20 5 chr4 112998018 112998213 -42631907 - MusHAL1 LINE L1 -2370 342 145 4 1447 902 96 0 7 chr4 112998482 112998618 -42631502 + (TTCTC)n Simple_repeat Simple_repeat 1 135 0 4 1447 1028 131 0 6 chr4 112998620 112998796 -42631324 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 4 1447 228 226 0 0 chr4 112998801 112998863 -42631257 + CT-rich Low_complexity Low_complexity 3 64 0 4 1447 522 229 82 32 chr4 112999837 112999995 -42630125 - RMER13B LTR ERVK 0 908 743 4 1447 950 212 5 0 chr4 113000000 113000184 -42629936 - RMER13B LTR ERVK -171 737 553 1 1447 339 25 0 0 chr4 113000876 113000916 -42629204 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 2 1447 833 114 16 0 chr4 113001701 113001824 -42628296 + RMER17C-int LTR ERVK 3114 3238 0 3 1447 5399 113 12 5 chr4 113001863 113002682 -42627438 + RLTR22_Mus LTR ERVK 1 825 -983 3 1447 239 273 12 49 chr4 113002879 113002960 -42627160 + RLTR22_Mus LTR ERVK 1544 1621 -187 4 1447 1158 221 132 98 chr4 113003048 113003249 -42626871 + RMER17C LTR ERVK 14 398 -560 5 1447 549 0 0 0 chr4 113003249 113003310 -42626810 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1447 1158 244 80 11 chr4 113003310 113003508 -42626612 + RMER17C LTR ERVK 180 402 -8 5 1447 259 159 14 236 chr4 113003687 113003827 -42626293 - MLT1A1 LTR MaLR -299 109 1 7 1447 635 293 46 77 chr4 113004505 113004701 -42625419 - B3A SINE B2 0 198 9 8 1447 180 97 0 0 chr4 113004761 113004792 -42625328 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 9 1447 706 210 193 0 chr4 113006063 113006239 -42623881 - B3 SINE B2 -6 210 1 1 1447 278 167 0 94 chr4 113006885 113006938 -42623182 + ORR1A2 LTR MaLR 1 48 -279 1 1447 9413 193 90 8 chr4 113006938 113009153 -42620967 - L1_Mur2 LINE L1 -468 5409 3012 1 1447 32061 102 14 2 chr4 113009168 113014739 -42615381 - L1Md_F LINE L1 -90 5793 154 1 1447 502 298 6 0 chr4 113014787 113014948 -42615172 + L1_Mur3 LINE L1 3730 3891 -1989 1 1447 321 218 0 0 chr4 113015016 113015071 -42615049 - Lx5 LINE L1 -170 6880 6826 1 1447 12506 194 57 24 chr4 113015173 113019760 -42610360 + L1Md_F2 LINE L1 571 5568 -312 1 1447 7021 95 1 4 chr4 113019773 113020757 -42609363 + L1Md_F2 LINE L1 5587 6567 -15 1 1447 189 0 0 0 chr4 113020794 113020815 -42609305 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1447 14450 124 13 16 chr4 113020815 113023129 -42606991 + L1_Mm LINE L1 3482 5790 -93 1 1447 24 116 0 0 chr4 113024248 113024377 -42605743 + AT_rich Low_complexity Low_complexity 1 129 0 1 1447 264 138 104 30 chr4 113024451 113024615 -42605505 + (TA)n Simple_repeat Simple_repeat 2 177 0 2 1447 229 152 56 83 chr4 113024559 113024739 -42605381 + (CATATA)n Simple_repeat Simple_repeat 3 177 0 2 1447 273 217 71 18 chr4 113024665 113024834 -42605286 + (CATAT)n Simple_repeat Simple_repeat 2 179 0 2 1447 292 218 52 23 chr4 113024806 113024980 -42605140 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2 1447 256 236 42 48 chr4 113025063 113025228 -42604892 + (CATAT)n Simple_repeat Simple_repeat 2 165 0 2 1447 293 192 21 113 chr4 113025154 113025393 -42604727 + (TTATA)n Simple_repeat Simple_repeat 1 216 0 2 1447 302 200 33 71 chr4 113025484 113025667 -42604453 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 2 1447 312 374 24 42 chr4 113025763 113025975 -42604145 + MER2 DNA MER2_type 138 345 0 2 1447 228 298 35 12 chr4 113026247 113026332 -42603788 - ORR1E LTR MaLR -4 355 269 2 1447 290 366 10 0 chr4 113026420 113026521 -42603599 - ORR1E LTR MaLR -251 108 7 2 1447 275 310 70 0 chr4 113026512 113026612 -42603508 - MTE-int LTR MaLR -52 1528 1422 2 1447 17649 69 78 3 chr4 113027568 113030607 -42599513 - L1Md_A LINE L1 -1989 3894 472 3 1447 7966 56 0 1 chr4 113030620 113031835 -42598285 - L1Md_F2 LINE L1 -12 6570 5357 3 1447 4766 85 3 1 chr4 113031837 113032497 -42597623 + L1Md_F2 LINE L1 4702 5362 -521 3 1447 11777 166 23 15 chr4 113032503 113035043 -42595077 - L1_Mur1 LINE L1 -2343 3543 974 3 1447 331 263 121 0 chr4 113035066 113035165 -42594955 - L1_Mur1 LINE L1 -6231 753 643 3 1447 1179 119 11 0 chr4 113035218 113035394 -42594726 + B2_Mm1t SINE B2 2 179 -14 3 1447 411 111 364 10 chr4 113035421 113035520 -42594600 + B2_Mm2 SINE B2 46 179 -16 3 1447 474 267 147 16 chr4 113035712 113035902 -42594218 + B3 SINE B2 2 216 0 3 1447 23 0 0 0 chr4 113036170 113036193 -42593927 + AT_rich Low_complexity Low_complexity 1 23 0 3 1447 8905 127 27 3 chr4 113036338 113037991 -42592129 - Lx3A LINE L1 -6 6975 5291 3 1447 2595 106 15 17 chr4 113038025 113038430 -42591690 + BGLII_Mus LTR ERVK 1 404 -18 3 1447 1842 127 6 31 chr4 113038430 113038747 -42591373 - Lx3A LINE L1 -620 5266 4958 3 1447 294 103 69 0 chr4 113039522 113039609 -42590511 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1447 229 212 35 12 chr4 113039615 113039701 -42590419 + (TATAA)n Simple_repeat Simple_repeat 5 92 0 4 1447 802 232 62 76 chr4 113039763 113040169 -42589951 + L1MA9 LINE L1 5904 6303 -9 4 1447 362 216 136 0 chr4 113040436 113040561 -42589559 - L1MA4 LINE L1 -359 5941 5800 4 1447 436 334 108 44 chr4 113040905 113041293 -42588827 - Lx8 LINE L1 -2 7471 7059 4 1447 313 325 8 16 chr4 113041329 113041451 -42588669 + L1M2 LINE L1 5082 5202 -941 4 1447 472 293 95 0 chr4 113041451 113041567 -42588553 + B1_Mur1 SINE Alu 22 148 -1 4 1447 254 235 137 0 chr4 113041593 113041695 -42588425 + Lx9 LINE L1 7507 7622 -22 4 1447 21 0 0 0 chr4 113041698 113041719 -42588401 + AT_rich Low_complexity Low_complexity 1 21 0 4 1447 474 271 45 75 chr4 113041723 113041990 -42588130 - Lx9 LINE L1 -15 7629 7371 4 1447 532 306 27 61 chr4 113042103 113042364 -42587756 - Lx9 LINE L1 -445 7199 6948 4 1447 276 351 42 33 chr4 113042923 113043135 -42586985 - L1ME3 LINE L1 0 6162 5949 4 1447 27 49 0 0 chr4 113043321 113043362 -42586758 + AT_rich Low_complexity Low_complexity 1 41 0 5 1447 231 216 161 9 chr4 113043558 113043670 -42586450 - L1M5 LINE L1 -893 5253 5125 5 1447 531 337 29 0 chr4 113044452 113044627 -42585493 + B3A SINE B2 1 180 -18 5 1447 4986 123 41 26 chr4 113045031 113046047 -42584073 - L1Md_F LINE L1 -4464 1419 382 5 1447 6948 111 3 4 chr4 113046046 113047693 -42582427 + L1_Mus1 LINE L1 4922 6567 0 5 1447 3726 194 53 18 chr4 113047733 113048521 -42581599 + L1_Mm LINE L1 4411 5226 -657 5 1447 3236 132 13 9 chr4 113048515 113049066 -42581054 - L1_Mur1 LINE L1 -508 5378 4826 5 1447 2445 55 6 71 chr4 113049067 113049417 -42580703 - IAPLTR2b LTR ERVK 0 327 1 5 1447 5220 77 14 7 chr4 113049419 113050117 -42580003 - IAPEz-int LTR ERVK -2 6479 5777 5 1447 12458 80 35 67 chr4 113050099 113052101 -42578019 - IAPEz-int LTR ERVK -4584 1897 3 5 1447 2447 43 11 75 chr4 113052103 113052452 -42577668 - IAPLTR2b LTR ERVK 0 327 1 5 1447 7729 129 62 0 chr4 113052453 113053759 -42576361 - L1_Mur1 LINE L1 -1057 4829 3443 5 1447 1711 184 34 6 chr4 113053961 113054310 -42575810 - RLTR15 LTR ERVK 0 359 1 5 1447 256 293 52 89 chr4 113054997 113055132 -42574988 - ORR1E LTR MaLR -166 193 64 5 1447 21 57 0 0 chr4 113055351 113055386 -42574734 + AT_rich Low_complexity Low_complexity 1 35 0 6 1447 559 244 94 89 chr4 113057566 113057746 -42572374 + B3 SINE B2 1 181 -14 6 1447 21 71 0 0 chr4 113057916 113057958 -42572162 + AT_rich Low_complexity Low_complexity 1 42 0 6 1447 1157 316 49 15 chr4 113058202 113058671 -42571449 + Lx8 LINE L1 6827 7311 -162 6 1447 369 0 0 0 chr4 113059372 113059413 -42570707 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1447 30 0 0 0 chr4 113059954 113059984 -42570136 + AT_rich Low_complexity Low_complexity 1 30 0 6 1447 3043 151 8 16 chr4 113060182 113060415 -42569705 - Lx LINE L1 -136 6518 6289 6 1447 2973 76 5 2 chr4 113060415 113060810 -42569310 - MTA_Mm LTR MaLR 0 396 1 6 1447 3043 151 8 16 chr4 113060810 113061075 -42569045 - Lx LINE L1 -366 6288 6024 6 1447 2729 201 86 25 chr4 113061818 113062345 -42567775 - L1_Mur3 LINE L1 -2665 3215 2658 6 1447 2042 212 16 22 chr4 113062345 113062852 -42567268 - RLTR19C LTR ERVK 0 506 3 6 1447 2729 201 86 25 chr4 113062852 113063084 -42567036 - L1_Mur3 LINE L1 -3223 2657 2410 6 1447 3272 185 21 44 chr4 113063073 113063774 -42566346 + L1_Mur3 LINE L1 3919 4606 -1274 7 1447 1732 102 295 12 chr4 113063774 113064093 -42566027 - RLTR9E LTR ERVK 0 409 1 7 1447 3272 185 21 44 chr4 113064093 113064138 -42565982 + L1_Mur3 LINE L1 4607 4648 -1232 7 1447 229 300 27 107 chr4 113064318 113064430 -42565690 + RLTR33 LTR ERVK 445 547 -131 7 1447 1844 184 29 35 chr4 113064589 113065045 -42565075 - L1_Mur3 LINE L1 -2195 3685 3234 7 1447 207 0 0 0 chr4 113065057 113065080 -42565040 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1447 428 140 75 0 chr4 113065081 113065174 -42564946 - L1_Mur3 LINE L1 -2544 3336 3237 7 1447 575 285 118 52 chr4 113065169 113065439 -42564681 + Lx6 LINE L1 5981 6268 -1192 7 1447 2121 315 109 12 chr4 113065441 113066276 -42563844 + Lx6 LINE L1 6518 7433 -27 7 1447 483 73 0 0 chr4 113066671 113066739 -42563381 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1447 23 54 0 0 chr4 113067219 113067256 -42562864 + AT_rich Low_complexity Low_complexity 1 37 0 7 1447 30808 88 1 9 chr4 113067606 113072940 -42557180 + L1Md_F2 LINE L1 296 5585 -298 7 1447 7796 57 8 0 chr4 113072941 113073929 -42556191 + L1Md_F2 LINE L1 5587 6582 0 7 1447 2348 247 69 64 chr4 113074029 113074818 -42555302 + L1Md_F LINE L1 153 945 -5596 8 1447 441 0 0 0 chr4 113074818 113074867 -42555253 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1447 2348 188 28 0 chr4 113074867 113075035 -42555085 + L1Md_F LINE L1 925 1102 -5417 8 1447 510 209 35 71 chr4 113075036 113075206 -42554914 - RLTR43A LTR ERVK 0 364 201 8 1447 28357 124 14 14 chr4 113075393 113080754 -42549366 + L1_Mus2 LINE L1 1131 6485 -81 8 1447 7067 189 35 16 chr4 113080836 113083284 -42546836 - Lx3C LINE L1 -2 6974 4478 8 1447 1937 176 0 0 chr4 113083283 113083629 -42546491 + L1_Mur2 LINE L1 3855 4200 -1677 8 1447 4330 110 12 93 chr4 113083630 113084435 -42545685 + RMER17A LTR ERVK 1 740 -11 8 1447 2215 143 24 12 chr4 113084454 113084865 -42545255 + L1_Mm LINE L1 4202 4617 -1266 8 1447 342 252 10 10 chr4 113084935 113085035 -42545085 + L1VL1 LINE L1 277 376 -6046 8 1447 444 279 30 12 chr4 113085171 113085338 -42544782 + L1Md_F LINE L1 675 844 -5772 8 1447 4507 137 8 105 chr4 113085308 113086646 -42543474 + L1Md_F LINE L1 725 1909 -3974 8 1447 36483 67 3 13 chr4 113086636 113092642 -42537478 + L1Md_F LINE L1 99 5586 -297 9 1447 7968 59 0 0 chr4 113092642 113093638 -42536482 + L1Md_T LINE L1 5587 6582 0 9 1447 36483 194 0 7 chr4 113093638 113093778 -42536342 + L1Md_F LINE L1 5587 5596 -287 9 1447 19768 135 12 7 chr4 113093752 113096063 -42534057 + L1_Mm LINE L1 1972 4185 -1698 9 1447 342 0 0 0 chr4 113096063 113096101 -42534019 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1447 19768 136 13 8 chr4 113096101 113097197 -42532923 + L1_Mm LINE L1 4186 5334 -969 9 1447 4758 151 32 24 chr4 113097214 113098688 -42531432 + L1Md_F LINE L1 177 1666 -4217 9 1447 1418 167 0 11 chr4 113098675 113098959 -42531161 + L1Md_F LINE L1 1951 2231 -3652 9 1447 193 116 72 0 chr4 113098987 113099056 -42531064 + (TA)n Simple_repeat Simple_repeat 2 75 0 9 1447 320 242 30 30 chr4 113099093 113099259 -42530861 + (TATAA)n Simple_repeat Simple_repeat 4 169 0 9 1447 294 207 26 79 chr4 113099277 113099466 -42530654 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 9 1447 215 228 57 35 chr4 113099456 113099597 -42530523 + (ATATG)n Simple_repeat Simple_repeat 2 145 0 9 1447 202 148 77 62 chr4 113099569 113099699 -42530421 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 9 1447 303 151 39 85 chr4 113099635 113099827 -42530293 + (TATAA)n Simple_repeat Simple_repeat 1 183 0 9 1447 253 246 47 29 chr4 113099859 113100031 -42530089 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 1 1447 331 128 75 58 chr4 113099954 113100172 -42529948 + (TA)n Simple_repeat Simple_repeat 1 221 0 1 1447 25 31 0 0 chr4 113100427 113100459 -42529661 + AT_rich Low_complexity Low_complexity 1 32 0 1 1447 1080 88 0 0 chr4 113102161 113102308 -42527812 - B1_Mus1 SINE Alu 0 148 2 1 1447 259 346 38 9 chr4 113103072 113103177 -42526943 + MTEb LTR MaLR 3 110 -249 1 1447 226 418 24 8 chr4 113103182 113103305 -42526815 - LTR88a LTR Gypsy -573 243 119 1 1447 265 243 0 28 chr4 113103421 113103493 -42526627 + MTEb LTR MaLR 275 344 -35 1 1447 32 26 0 0 chr4 113103882 113103921 -42526199 + AT_rich Low_complexity Low_complexity 1 39 0 1 1447 1052 147 72 14 chr4 113103921 113104128 -42525992 - Lx3_Mus LINE L1 -2 7007 6789 1 1447 1201 277 23 0 chr4 113104131 113104434 -42525686 + Lx6 LINE L1 7136 7445 -15 1 1447 3786 114 35 3 chr4 113104435 113105032 -42525088 + Lx3_Mus LINE L1 6394 7009 0 1 1447 237 346 95 9 chr4 113105168 113105273 -42524847 + B4 SINE B4 31 144 -148 1 1447 359 250 64 21 chr4 113105220 113105314 -42524806 + PB1D10 SINE Alu 7 104 -13 1 1447 461 285 71 55 chr4 113105404 113105586 -42524534 - Lx8 LINE L1 -62 7411 7227 1 1447 188 179 30 0 chr4 113106526 113106593 -42523527 + (TCTCTG)n Simple_repeat Simple_repeat 6 74 0 1 1447 364 351 0 0 chr4 113106672 113106766 -42523354 - PB1D10 SINE Alu -7 110 17 1 1447 232 247 57 34 chr4 113107179 113107267 -42522853 - L1MD LINE L1 -2208 5787 5698 1 1447 10002 24 0 44 chr4 113107440 113108563 -42521557 - L1_Mm LINE L1 -586 5297 4224 1 1447 1266 14 0 0 chr4 113108563 113108710 -42521410 - B1_Mm SINE Alu 0 147 1 1 1447 10002 24 0 44 chr4 113108710 113108865 -42521255 - L1_Mm LINE L1 -1660 4223 4075 1 1447 2561 24 0 0 chr4 113108856 113109153 -42520967 + L1Md_T LINE L1 5290 5586 -297 1 1447 8970 6 0 0 chr4 113109153 113110187 -42519933 + L1Md_T LINE L1 5587 6582 0 1 1447 394 336 0 8 chr4 113110443 113110572 -42519548 + Lx8 LINE L1 6670 6797 -676 1 1447 313 317 0 0 chr4 113110655 113110759 -42519361 + L1_Mur3 LINE L1 3730 3833 -2047 1 1447 448 312 49 0 chr4 113110777 113110921 -42519199 + Lx8 LINE L1 6835 6985 -488 1 1447 337 167 19 0 chr4 113111112 113111166 -42518954 + Lx5 LINE L1 6826 6880 -170 1 1447 475 296 13 0 chr4 113111222 113111381 -42518739 - L1_Mur3 LINE L1 -1978 3902 3742 1 1447 248 277 53 15 chr4 113111418 113111550 -42518570 + L1_Mur1 LINE L1 1615 1751 -4135 1 1447 406 210 67 33 chr4 113111545 113111587 -42518533 + L1_Mur3 LINE L1 3612 3672 -2468 1 1447 317 43 21 0 chr4 113111587 113111634 -42518486 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 1447 406 209 67 33 chr4 113111634 113111732 -42518388 + L1_Mur3 LINE L1 3646 3775 -2365 1 1447 286 265 98 15 chr4 113111727 113111930 -42518190 + L1_Mur3 LINE L1 3177 3396 -2484 1 1447 3885 138 16 6 chr4 113111936 113112565 -42517555 + Lx3A LINE L1 6346 6980 -1 1 1447 2183 122 25 3 chr4 113112579 113112942 -42517178 + Lx2 LINE L1 6371 6741 -256 1 1447 476 256 50 0 chr4 113112943 113113064 -42517056 + ETnERV2-int LTR ERVK 7070 7196 -210 1 1447 1547 154 12 0 chr4 113113458 113113717 -42516403 + Lx LINE L1 6391 6652 -2 1 1447 26 0 0 0 chr4 113113793 113113819 -42516301 + AT_rich Low_complexity Low_complexity 1 26 0 1 1447 821 137 7 0 chr4 113113832 113113978 -42516142 + Lx2 LINE L1 6851 6997 0 1 1447 22 0 0 0 chr4 113114061 113114083 -42516037 + AT_rich Low_complexity Low_complexity 1 22 0 1 1447 1461 289 63 26 chr4 113114089 113114885 -42515235 + L1_Mur3 LINE L1 3478 4302 -1578 1 1447 628 74 21 0 chr4 113114901 113114996 -42515124 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 1 180 232 219 19 68 chr4 113115116 113115219 -42514901 - L1M2 LINE L1 -2806 3337 3240 1 1448 1127 82 7 0 chr4 113116146 113116292 -42513828 + B1_Mus1 SINE Alu 2 148 0 1 1448 279 0 0 0 chr4 113116292 113116323 -42513797 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 1448 2032 252 3 162 chr4 113116423 113117143 -42512977 - RMER19C LTR ERVK -6 605 1 1 1448 1601 230 15 28 chr4 113117354 113117503 -42512617 + Lx7 LINE L1 6268 6416 -1280 1 1448 4075 128 124 85 chr4 113117503 113118375 -42511745 - RMER17A2 LTR ERVK 0 906 1 1 1448 1601 230 15 28 chr4 113118375 113118555 -42511565 + Lx7 LINE L1 6417 6595 -1101 1 1448 4286 21 2 0 chr4 113118555 113119036 -42511084 - LTRIS_Mm LTR ERV1 0 482 1 1 1448 1601 230 15 28 chr4 113119036 113119095 -42511025 + Lx7 LINE L1 6596 6652 -1044 1 1448 1960 172 0 0 chr4 113119096 113119427 -42510693 + Lx7 LINE L1 6780 7110 -586 1 1448 378 42 0 0 chr4 113119619 113119667 -42510453 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1448 195 100 0 0 chr4 113119667 113119696 -42510424 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1 1448 207 100 0 0 chr4 113120871 113120901 -42509219 + (TGGA)n Simple_repeat Simple_repeat 2 31 0 1 1448 2897 48 0 0 chr4 113121088 113121442 -42508678 - L1Md_T LINE L1 0 6582 6229 1 1448 5292 30 13 6 chr4 113121482 113122118 -42508002 + L1Md_F3 LINE L1 5931 6570 -14 1 1448 1105 82 7 0 chr4 113122739 113122885 -42507235 + B1_Mus1 SINE Alu 2 148 0 1 1448 183 100 0 0 chr4 113122885 113122915 -42507205 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1448 368 99 14 0 chr4 113123841 113123912 -42506208 + (CAAAA)n Simple_repeat Simple_repeat 3 74 0 1 1448 667 256 7 28 chr4 113124559 113124700 -42505420 - RSINE1 SINE B4 -25 140 3 1 1448 290 93 37 0 chr4 113124748 113124802 -42505318 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 1 1448 318 292 37 62 chr4 113125207 113125448 -42504672 + L1MA6 LINE L1 6043 6277 -23 1 1448 218 337 12 12 chr4 113126580 113126745 -42503375 + (CA)n Simple_repeat Simple_repeat 2 166 0 1 1448 644 103 9 0 chr4 113126747 113126854 -42503266 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 1448 201 276 150 96 chr4 113127710 113127879 -42502241 - MIRb SINE MIR -73 195 7 1 1448 28 86 0 0 chr4 113128064 113128134 -42501986 + AT_rich Low_complexity Low_complexity 1 70 0 1 1448 270 414 28 10 chr4 113128244 113128632 -42501488 - Lx8 LINE L1 -192 7281 6887 1 1448 1224 282 122 85 chr4 113128690 113128954 -42501166 - Lx6 LINE L1 -19 7441 7171 1 1448 240 35 0 0 chr4 113128954 113128983 -42501137 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1448 1224 282 122 85 chr4 113128983 113129609 -42500511 - Lx6 LINE L1 -290 7170 6518 1 1448 1980 144 16 57 chr4 113129676 113130060 -42500060 - RLTR9A LTR ERVK 0 368 1 1 1448 347 140 0 0 chr4 113130077 113130134 -42499986 - ETnERV2-int LTR ERVK -19 7387 7331 1 1448 423 0 0 0 chr4 113130262 113130309 -42499811 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1448 310 250 165 0 chr4 113130422 113130586 -42499534 - ETnERV2-int LTR ERVK -983 6423 6233 1 1448 4042 108 10 0 chr4 113130744 113131325 -42498795 + L1_Mus1 LINE L1 5980 6566 -1 1 1448 7068 153 76 54 chr4 113131383 113132914 -42497206 - ETnERV2-int LTR ERVK -1428 4380 3005 1 1448 6094 70 9 12 chr4 113132914 113133723 -42496397 + RLTR13D1 LTR ERVK 1 806 0 1 1448 7068 209 67 109 chr4 113133723 113133995 -42496125 - ETnERV2-int LTR ERVK -2275 3533 3186 1 1448 5731 88 27 11 chr4 113133995 113134800 -42495320 - L1Md_F2 LINE L1 -1 6581 5764 1 1448 7259 187 16 43 chr4 113134800 113136542 -42493578 - ETnERV2-int LTR ERVK -2623 3185 1427 1 1448 532 115 17 17 chr4 113136553 113136668 -42493452 - L1_Mus3 LINE L1 -8 6630 6516 1 1448 2819 52 0 0 chr4 113136668 113136998 -42493122 + IAPEY3_LTR LTR ERVK 1 330 -2 1 1448 53070 70 22 2 chr4 113136998 113144496 -42485624 + IAPEY3-int LTR ERVK 28 7680 0 1 1448 2706 72 0 0 chr4 113144496 113144828 -42485292 + IAPEY3_LTR LTR ERVK 1 332 0 1 1448 3088 138 74 0 chr4 113144828 113145873 -42484247 - L1_Mus3 LINE L1 -117 6521 5399 1 1448 8295 90 7 1 chr4 113145896 113148989 -42481131 - L1Md_T LINE L1 0 6582 3903 1 1448 1445 143 4 0 chr4 113148990 113149249 -42480871 - MusHAL1 LINE L1 -1309 1403 1144 1 1448 233 246 18 0 chr4 113149274 113149331 -42480789 - L1VL1 LINE L1 -6348 74 17 1 1448 1161 174 81 141 chr4 113149331 113149727 -42480393 - RLTR45-int LTR ERVK -4789 2455 2084 1 1448 477 110 0 0 chr4 113149730 113149812 -42480308 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1448 189 0 0 0 chr4 113149839 113149860 -42480260 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1448 260 53 26 0 chr4 113149862 113149900 -42480220 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 1 1448 1761 151 19 61 chr4 113150200 113150559 -42479561 - RLTR9A LTR ERVK 0 368 25 1 1448 336 332 78 34 chr4 113150627 113150676 -42479444 - Lx6 LINE L1 -664 6796 6744 1 1448 432 0 0 0 chr4 113150676 113150724 -42479396 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1448 336 332 78 34 chr4 113150724 113150942 -42479178 - Lx6 LINE L1 -717 6743 6517 1 1448 21 36 0 0 chr4 113151116 113151144 -42478976 + AT_rich Low_complexity Low_complexity 1 28 0 1 1448 644 284 98 21 chr4 113151840 113152034 -42478086 - B3 SINE B2 0 216 8 1 1448 21 36 0 0 chr4 113152202 113152230 -42477890 + AT_rich Low_complexity Low_complexity 1 28 0 1 1448 24 0 0 0 chr4 113152407 113152431 -42477689 + AT_rich Low_complexity Low_complexity 1 24 0 1 1448 221 254 0 16 chr4 113152585 113152649 -42477471 + GA-rich Low_complexity Low_complexity 1 63 0 1 1448 576 177 0 0 chr4 113152838 113153013 -42477107 + CT-rich Low_complexity Low_complexity 2 176 0 1 1448 334 301 135 19 chr4 113153385 113153541 -42476579 + MLT1D LTR MaLR 307 480 -25 1 1448 253 312 21 0 chr4 113153607 113153703 -42476417 + L1M2 LINE L1 2046 2143 -5025 1 1448 1540 84 48 9 chr4 113153975 113154204 -42475916 - L1_Mus2 LINE L1 -1 6565 6328 1 1448 326 288 41 0 chr4 113154242 113154388 -42475732 + L1M2 LINE L1 2492 2643 -4525 1 1448 326 23 23 0 chr4 113154813 113154856 -42475264 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1448 429 175 19 10 chr4 113154856 113154960 -42475160 + (TA)n Simple_repeat Simple_repeat 1 105 0 1 1448 340 240 81 24 chr4 113154960 113155084 -42475036 - L1MCa LINE L1 -4549 1959 1829 1 1448 27 49 0 0 chr4 113155206 113155247 -42474873 + AT_rich Low_complexity Low_complexity 1 41 0 1 1448 6903 58 1 0 chr4 113155491 113156350 -42473770 + L1Md_F2 LINE L1 5711 6570 -12 1 1448 833 292 28 19 chr4 113157476 113157836 -42472284 - RLTR18-int LTR ERVK -4996 365 3 1 1448 1011 297 24 17 chr4 113157872 113158170 -42471950 - RLTR18B LTR ERVK -9 503 204 1 1448 1002 251 38 4 chr4 113158201 113158437 -42471683 - RLTR18B LTR ERVK -265 247 4 1 1448 478 298 73 17 chr4 113160651 113160883 -42469237 + L1M3 LINE L1 5478 5722 -461 1 1448 423 312 86 17 chr4 113161129 113161419 -42468701 - L1MB3 LINE L1 -39 6144 5835 1 1448 2880 98 2 2 chr4 113162153 113162564 -42467556 - L1_Mus2 LINE L1 0 6566 6156 1 1448 261 0 0 0 chr4 113163287 113163316 -42466804 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1448 25426 86 13 4 chr4 113163552 113169711 -42460409 - L1Md_F2 LINE L1 -1 6581 366 1 1448 474 18 0 0 chr4 113169774 113169829 -42460291 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1448 240 35 0 0 chr4 113169829 113169857 -42460263 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1448 414 0 0 0 chr4 113170096 113170142 -42459978 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1448 953 150 0 0 chr4 113170514 113170661 -42459459 - B1_Mus1 SINE Alu 0 148 2 2 1448 267 360 70 25 chr4 113170920 113171077 -42459043 - RMER15 LTR ERVL -22 553 390 2 1448 457 273 67 17 chr4 113171585 113171764 -42458356 - RMER15-int LTR ERVL -566 4433 4246 2 1448 3662 147 29 6 chr4 113171961 113172470 -42457650 + Lx LINE L1 6010 6518 -136 2 1448 212 0 0 35 chr4 113172470 113172499 -42457621 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 2 1448 3662 147 29 6 chr4 113172499 113172617 -42457503 + Lx LINE L1 6519 6650 -4 2 1448 404 70 42 0 chr4 113172637 113172708 -42457412 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 2 1448 360 308 38 23 chr4 113172913 113173046 -42457074 - RMER15-int LTR ERVL -3794 1205 1071 2 1448 253 355 0 53 chr4 113173965 113174078 -42456042 - RMER15 LTR ERVL -132 443 337 2 1448 7290 90 7 3 chr4 113174240 113175625 -42454495 - L1_Mus1 LINE L1 0 6567 5180 2 1448 3597 294 20 20 chr4 113175626 113176865 -42453255 - MurERV4-int LTR ERVK -3066 2194 956 2 1448 23 54 0 0 chr4 113177849 113177886 -42452234 + AT_rich Low_complexity Low_complexity 1 37 0 2 1448 650 284 78 55 chr4 113178005 113178388 -42451732 - MurERV4-int LTR ERVK -2008 3252 2861 2 1448 25 0 0 0 chr4 113178497 113178522 -42451598 + AT_rich Low_complexity Low_complexity 1 25 0 2 1448 2058 313 57 29 chr4 113178578 113178594 -42451526 - MurERV4-int LTR ERVK -2019 3241 3226 2 1448 844 157 7 13 chr4 113178594 113178743 -42451377 - B1_Mus1 SINE Alu 0 148 1 2 1448 2058 313 57 29 chr4 113178743 113179142 -42450978 - MurERV4-int LTR ERVK -2035 3225 2806 2 1448 222 37 0 0 chr4 113179142 113179169 -42450951 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1448 2058 313 57 29 chr4 113179169 113179973 -42450147 - MurERV4-int LTR ERVK -2455 2805 1988 2 1448 5488 114 35 2 chr4 113180016 113181600 -42448520 - L1Md_F LINE L1 -3859 2024 387 2 1448 1894 331 21 30 chr4 113181607 113182556 -42447564 - MurERV4-int LTR ERVK -3372 1888 948 2 1448 23 54 0 0 chr4 113183046 113183083 -42447037 + AT_rich Low_complexity Low_complexity 1 37 0 2 1448 485 288 82 57 chr4 113183208 113183576 -42446544 - MurERV4-int LTR ERVK -2023 3237 2861 2 1448 228 179 18 0 chr4 113183754 113183810 -42446310 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 2 1448 387 283 95 62 chr4 113183810 113183821 -42446299 - MurERV4-int LTR ERVK -2023 3237 3227 2 1448 826 175 0 0 chr4 113183821 113183964 -42446156 - B1_Mus1 SINE Alu -5 143 1 2 1448 387 283 95 62 chr4 113183964 113184352 -42445768 - MurERV4-int LTR ERVK -2034 3226 2826 2 1448 1866 337 26 33 chr4 113184481 113185652 -42444468 - MurERV4-int LTR ERVK -3134 2126 965 2 1448 4507 46 2 0 chr4 113185937 113186523 -42443597 - L1Md_T LINE L1 -529 5627 5004 2 1448 7907 48 7 0 chr4 113186538 113187514 -42442606 + L1Md_T LINE L1 5587 6569 -13 2 1448 21 36 0 0 chr4 113187651 113187679 -42442441 + AT_rich Low_complexity Low_complexity 1 28 0 2 1448 7306 117 3 5 chr4 113187819 113188916 -42441204 + L1_Mm LINE L1 4659 5753 -130 2 1448 505 208 14 4 chr4 113188916 113189029 -42441091 - B1_Mus1 SINE Alu -6 114 1 2 1448 486 294 83 79 chr4 113189029 113189546 -42440574 - MurERV4-int LTR ERVK -2035 3225 2707 2 1448 1955 338 22 28 chr4 113189548 113190709 -42439411 - MurERV4-int LTR ERVK -3134 2126 973 2 1448 21 36 0 0 chr4 113191146 113191174 -42438946 + AT_rich Low_complexity Low_complexity 1 28 0 2 1448 7388 114 3 3 chr4 113191313 113192408 -42437712 + L1_Mm LINE L1 4659 5753 -130 2 1448 452 240 12 2 chr4 113192408 113192517 -42437603 - B1_Mus1 SINE Alu -10 110 1 2 1448 484 306 67 67 chr4 113192517 113193036 -42437084 - MurERV4-int LTR ERVK -2035 3225 2707 2 1448 1925 340 23 31 chr4 113193038 113194209 -42435911 - MurERV4-int LTR ERVK -3134 2126 965 2 1448 7596 105 1 6 chr4 113194823 113195923 -42434197 + L1_Mm LINE L1 4659 5753 -130 2 1448 505 207 13 3 chr4 113195923 113196032 -42434088 - B1_Mus1 SINE Alu -10 110 1 2 1448 464 304 75 73 chr4 113196032 113196550 -42433570 - MurERV4-int LTR ERVK -2035 3225 2707 2 1448 1700 355 17 27 chr4 113196552 113197718 -42432402 - MurERV4-int LTR ERVK -3134 2126 973 2 1448 6230 110 1 14 chr4 113198343 113199281 -42430839 + L1Md_F2 LINE L1 4659 5584 -299 2 1448 6162 137 3 12 chr4 113199284 113200288 -42429832 + L1Md_F2 LINE L1 5588 6582 0 2 1448 593 269 101 58 chr4 113200296 113200518 -42429602 - MurERV4-int LTR ERVK -2020 3240 3022 2 1448 654 79 0 0 chr4 113200518 113200607 -42429513 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 1448 593 269 101 58 chr4 113200607 113200712 -42429408 - MurERV4-int LTR ERVK -2239 3021 2899 2 1448 623 193 0 0 chr4 113200718 113200837 -42429283 - B1_Mus1 SINE Alu -29 119 1 2 1448 345 284 46 54 chr4 113200725 113200855 -42429265 - B4 SINE B4 -90 202 74 2 1448 36573 56 1 7 chr4 113200929 113207142 -42422978 - L1Md_T LINE L1 0 6582 462 2 1448 3899 322 48 27 chr4 113207201 113209302 -42420818 - MurERV4-int LTR ERVK -2151 3109 965 2 1448 335 300 8 0 chr4 113209932 113210052 -42420068 - MurERV4-int LTR ERVK -2031 3229 3109 2 1448 39 22 0 0 chr4 113210486 113210532 -42419588 + AT_rich Low_complexity Low_complexity 1 46 0 2 1448 700 192 14 0 chr4 113210532 113210678 -42419442 - B1_Mus1 SINE Alu 0 148 1 2 1448 2786 319 51 40 chr4 113210724 113212454 -42417666 - MurERV4-int LTR ERVK -2080 3180 1442 2 1448 612 0 0 0 chr4 113212454 113212522 -42417598 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1448 2786 319 51 40 chr4 113212522 113212585 -42417535 - MurERV4-int LTR ERVK -3819 1441 1369 2 1448 190 353 25 41 chr4 113212589 113212710 -42417410 - L3 LINE CR1 -2473 2016 1898 2 1448 512 329 31 37 chr4 113212710 113213032 -42417088 - MurERV4-int LTR ERVK -4019 1241 922 2 1448 773 244 79 66 chr4 113213595 113213973 -42416147 - MurERV4-int LTR ERVK -2017 3243 2861 2 1448 773 168 7 0 chr4 113214100 113214237 -42415883 - B1_Mus1 SINE Alu -8 140 3 2 1448 3810 328 36 37 chr4 113214238 113216502 -42413618 - MurERV4-int LTR ERVK -2034 3226 965 2 1448 259 318 8 8 chr4 113217126 113217253 -42412867 - MurERV4-int LTR ERVK -2025 3235 3109 2 1448 218 213 0 0 chr4 113217681 113217728 -42412392 + T-rich Low_complexity Low_complexity 2 48 0 2 1448 829 164 7 0 chr4 113217734 113217874 -42412246 - B1_Mus1 SINE Alu -7 141 1 2 1448 2333 320 62 42 chr4 113217883 113219521 -42410599 - MurERV4-int LTR ERVK -2041 3219 1549 2 1448 331 161 0 0 chr4 113219521 113219577 -42410543 + L1Md_T LINE L1 282 337 -6282 2 1448 25649 47 1 1 chr4 113219570 113224503 -42405617 + L1Md_T LINE L1 563 5589 -297 2 1448 8271 36 3 0 chr4 113224503 113225496 -42404624 + L1Md_T LINE L1 5590 6585 0 2 1448 470 76 0 0 chr4 113225496 113225562 -42404558 + L1_Mur2 LINE L1 4327 4392 -1485 2 1448 876 322 20 48 chr4 113225571 113226110 -42404010 - MurERV4-int LTR ERVK -3771 1489 966 2 1448 391 314 63 63 chr4 113226743 113227121 -42402999 - MurERV4-int LTR ERVK -2025 3235 2858 2 1448 22 56 0 0 chr4 113227306 113227342 -42402778 + AT_rich Low_complexity Low_complexity 1 36 0 2 1448 675 174 72 0 chr4 113227342 113227480 -42402640 - B1_Mus1 SINE Alu 0 148 1 2 1448 3391 325 43 30 chr4 113227529 113227886 -42402234 - MurERV4-int LTR ERVK -2080 3180 2806 2 1448 207 0 0 0 chr4 113227886 113227909 -42402211 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1448 3391 325 43 30 chr4 113227909 113229737 -42400383 - MurERV4-int LTR ERVK -2455 2805 967 2 1448 571 291 64 61 chr4 113230364 113230741 -42399379 - MurERV4-int LTR ERVK -2025 3235 2858 2 1448 26 0 0 0 chr4 113230926 113230952 -42399168 + AT_rich Low_complexity Low_complexity 1 26 0 2 1448 817 150 7 45 chr4 113230952 113231106 -42399014 - B1_Mus1 SINE Alu 0 148 1 2 1448 1702 299 66 46 chr4 113231116 113231520 -42398600 - MurERV4-int LTR ERVK -2041 3219 2803 2 1448 306 0 0 0 chr4 113231520 113231554 -42398566 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1448 1702 299 66 46 chr4 113231554 113232257 -42397863 - MurERV4-int LTR ERVK -2458 2802 2090 2 1448 238 62 62 0 chr4 113232267 113232315 -42397805 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1448 381 331 42 11 chr4 113232579 113232768 -42397352 - MurERV4-int LTR ERVK -4046 1734 1540 2 1448 1192 309 33 34 chr4 113232871 113233485 -42396635 - MurERV4-int LTR ERVK -3683 1577 965 2 1448 587 282 72 60 chr4 113234094 113234441 -42395679 - MurERV4-int LTR ERVK -2017 3243 2893 2 1448 180 0 0 0 chr4 113234637 113234657 -42395463 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1448 761 186 0 0 chr4 113234658 113234798 -42395322 - B1_Mus1 SINE Alu -8 140 1 2 1448 3738 315 43 43 chr4 113234805 113237103 -42393017 - MurERV4-int LTR ERVK -2041 3219 922 2 1448 4186 40 2 2 chr4 113237640 113238171 -42391949 + ORR1A0-int LTR MaLR 802 1792 0 2 1448 2811 18 3 0 chr4 113238171 113238508 -42391612 + ORR1A0 LTR MaLR 1 338 -8 2 1448 342 286 8 0 chr4 113238551 113238677 -42391443 - MurERV4-int LTR ERVK -2025 3235 3109 2 1448 237 185 19 0 chr4 113239099 113239153 -42390967 + T-rich Low_complexity Low_complexity 6 60 0 2 1448 752 170 15 0 chr4 113239156 113239291 -42390829 - B1_Mus1 SINE Alu -7 141 5 2 1448 3484 311 49 54 chr4 113239303 113241569 -42388551 - MurERV4-int LTR ERVK -2041 3219 965 2 1448 669 252 87 66 chr4 113242201 113242533 -42387587 - MurERV4-int LTR ERVK -2030 3230 2892 2 1448 822 182 0 0 chr4 113242769 113242917 -42387203 - B1_Mus1 SINE Alu 0 148 1 2 1448 4312 314 39 37 chr4 113242945 113245258 -42384862 - MurERV4-int LTR ERVK -2023 3237 922 2 22 2296 296 39 27 chr4 113245857 113246852 -42383268 - MurERV4-int LTR ERVK -1993 3267 2261 2 1449 2826 149 24 2 chr4 113246855 113247360 -42382760 + Lx3_Mus LINE L1 6047 6562 -447 2 1449 308 390 16 83 chr4 113247549 113247862 -42382258 - RMER17B LTR ERVK -183 775 484 2 1449 468 365 5 5 chr4 113248113 113248306 -42381814 - RMER15-int LTR ERVL -3475 1524 1332 2 1449 5524 284 39 52 chr4 113248621 113249554 -42380566 - MurERV4-int LTR ERVK -1990 3270 2335 2 1449 1996 40 4 16 chr4 113249554 113249807 -42380313 - L1Md_F3 LINE L1 -12 6572 6323 2 1449 5524 284 39 52 chr4 113249807 113251248 -42378872 - MurERV4-int LTR ERVK -2926 2334 928 2 1449 393 362 0 0 chr4 113251331 113251480 -42378640 - RMER15-int LTR ERVL -3506 1493 1345 2 1449 3714 274 44 39 chr4 113251814 113253263 -42376857 - MurERV4-int LTR ERVK -2002 3258 1803 2 1449 32767 101 3 7 chr4 113253278 113259441 -42370679 - L1Md_F2 LINE L1 -2 6580 446 2 1449 1818 304 31 42 chr4 113259445 113260336 -42369784 - MurERV4-int LTR ERVK -3451 1809 928 2 1449 316 318 0 0 chr4 113260500 113260585 -42369535 - RMER15-int LTR ERVL -3583 1416 1332 2 1449 2894 55 145 17 chr4 113260587 113261008 -42369112 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1449 4121 86 21 22 chr4 113261009 113261737 -42368383 + IAPEz-int LTR ERVK 9 662 -5819 2 1449 2456 114 0 3 chr4 113261737 113262080 -42368040 + IAPEz-int LTR ERVK 1359 1700 -4781 2 1449 6137 78 12 12 chr4 113262075 113262904 -42367216 + IAPEz-int LTR ERVK 5653 6481 0 2 1449 3200 59 28 76 chr4 113262904 113263403 -42366717 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1449 180 0 0 0 chr4 113263756 113263776 -42366344 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1449 4805 297 50 35 chr4 113263776 113266041 -42364079 - MurERV4-int LTR ERVK -2041 3219 922 2 1449 2260 296 53 20 chr4 113266605 113267567 -42362553 - MurERV4-int LTR ERVK -2006 3254 2261 2 1449 2383 191 31 23 chr4 113267567 113268081 -42362039 + Lx3_Mus LINE L1 6044 6561 -448 2 1449 2206 279 36 72 chr4 113268081 113268589 -42361531 - RMER17B LTR ERVK -2 906 407 2 1449 3716 68 2 0 chr4 113268589 113269072 -42361048 + L1Md_F2 LINE L1 6087 6570 -12 2 1449 2206 263 39 78 chr4 113269072 113269555 -42360565 - RMER17B LTR ERVK -487 471 5 2 1449 2348 174 9 5 chr4 113269555 113269993 -42360127 + Lx3_Mus LINE L1 6553 6992 -17 2 1449 3210 307 16 20 chr4 113270011 113271240 -42358880 - MurERV4-int LTR ERVK -2993 2267 1044 2 1449 765 41 0 0 chr4 113271241 113271338 -42358782 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2 1449 555 16 0 0 chr4 113271338 113271402 -42358718 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1449 274 302 9 54 chr4 113271464 113271576 -42358544 - L1MC LINE L1 -1034 5112 5006 2 1449 347 329 14 0 chr4 113271613 113271753 -42358367 - L1M4 LINE L1 -1255 4891 4750 2 1449 226 323 0 20 chr4 113271796 113271894 -42358226 - L1M4 LINE L1 -1499 4641 4546 2 1449 1374 147 16 4 chr4 113271974 113272226 -42357894 - L1_Mus3 LINE L1 -10 6628 6374 2 1449 33228 106 21 19 chr4 113272261 113278823 -42351297 - L1Md_F2 LINE L1 -12 6570 1 2 1449 27428 143 13 7 chr4 113278820 113284758 -42345362 - L1_Mus3 LINE L1 -253 6385 409 2 1449 4606 295 61 35 chr4 113285437 113287610 -42342510 - MurERV4-int LTR ERVK -1990 3270 1042 2 1449 327 371 30 0 chr4 113287747 113287788 -42342332 - RMER15-int LTR ERVL -3475 1524 1483 3 1449 5455 49 0 0 chr4 113287788 113288458 -42341662 - L1Md_T LINE L1 -1 6581 5912 3 1449 327 371 30 0 chr4 113288458 113288613 -42341507 - RMER15-int LTR ERVL -3517 1482 1323 3 1449 35757 68 5 6 chr4 113288634 113294807 -42335313 - L1Md_F2 LINE L1 -2 6580 416 3 1449 4655 293 64 34 chr4 113295138 113297270 -42332850 - MurERV4-int LTR ERVK -2023 3237 1042 3 1449 473 362 20 0 chr4 113297407 113297606 -42332514 - RMER15-int LTR ERVL -3475 1524 1322 3 1449 5005 295 45 35 chr4 113297941 113300228 -42329892 - MurERV4-int LTR ERVK -2023 3237 928 3 1449 516 354 6 0 chr4 113300283 113300461 -42329659 - RMER15-int LTR ERVL -3476 1523 1345 3 1449 261 203 0 0 chr4 113300816 113300880 -42329240 - MurERV4-int LTR ERVK -2023 3237 3174 3 1449 322 122 0 20 chr4 113300882 113300932 -42329188 + L1_Mus2 LINE L1 6410 6458 -108 3 1449 2969 298 31 42 chr4 113300933 113302186 -42327934 - MurERV4-int LTR ERVK -2562 2698 1459 3 1449 3672 278 42 38 chr4 113302768 113303764 -42326356 - MurERV4-int LTR ERVK -3048 2212 1217 3 1449 985 70 39 0 chr4 113303764 113303893 -42326227 + B1_Mus2 SINE Alu 5 138 -9 3 1449 208 0 62 0 chr4 113303893 113303925 -42326195 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1449 3672 278 42 38 chr4 113303925 113304341 -42325779 - MurERV4-int LTR ERVK -4044 1216 793 3 1449 256 128 28 47 chr4 113304343 113304450 -42325670 + T-rich Low_complexity Low_complexity 4 108 0 3 1449 1022 71 0 7 chr4 113304470 113304612 -42325508 - B1_Mm SINE Alu 0 147 7 3 1449 1976 262 41 18 chr4 113304612 113305222 -42324898 - MurERV4-int LTR ERVK -4477 783 160 3 1449 3513 112 6 2 chr4 113305283 113305794 -42324326 - L1_Mus4 LINE L1 -3 6633 6121 3 1449 22 0 0 0 chr4 113305914 113305936 -42324184 + AT_rich Low_complexity Low_complexity 1 22 0 3 1449 1194 286 79 40 chr4 113306693 113307271 -42322849 + RMER12 LTR ERVK 1 584 -1264 3 1449 304 300 54 0 chr4 113307304 113307434 -42322686 + RMER12 LTR ERVK 874 1010 -394 3 1449 238 250 0 14 chr4 113307618 113307674 -42322446 + CT-rich Low_complexity Low_complexity 19 73 0 3 1449 306 0 0 0 chr4 113307674 113307708 -42322412 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1449 238 250 0 14 chr4 113307708 113307724 -42322396 + polypyrimidine Low_complexity Low_complexity 3 18 0 3 1449 236 363 40 16 chr4 113307828 113307954 -42322166 + RMER12 LTR ERVK 1175 1303 -19 3 1449 416 383 14 32 chr4 113309739 113310017 -42320103 - RMER15-int LTR ERVL -4631 368 96 3 1449 342 296 45 32 chr4 113310085 113310242 -42319878 - RMER15 LTR ERVL -45 530 372 3 1449 1125 266 9 18 chr4 113310931 113311264 -42318856 - MurERV4-int LTR ERVK -1993 3267 2938 3 1449 21 0 0 0 chr4 113311270 113311291 -42318829 + AT_rich Low_complexity Low_complexity 1 21 0 3 1449 10071 189 16 15 chr4 113311291 113314523 -42315597 - Lx2 LINE L1 -1 6996 3770 3 1449 1587 165 39 6 chr4 113314521 113314833 -42315287 + MusHAL1 LINE L1 1601 1922 -790 3 1449 1759 201 6 0 chr4 113314828 113315181 -42314939 + L1_Mur2 LINE L1 3413 3767 -2110 3 1449 1149 271 68 22 chr4 113315186 113315601 -42314519 - MurERV4-int LTR ERVK -2329 2931 2498 3 1449 254 356 42 24 chr4 113316163 113316330 -42313790 - L1MD1 LINE L1 -77 6165 5996 3 1449 2312 192 75 34 chr4 113316378 113316884 -42313236 - RLTR11A LTR ERVK -1 527 1 3 1449 815 293 134 25 chr4 113316884 113316964 -42313156 - L1MD1 LINE L1 -278 5964 5883 3 1449 807 48 0 0 chr4 113316964 113317068 -42313052 + (CA)n Simple_repeat Simple_repeat 2 105 0 3 1449 815 293 134 25 chr4 113317068 113317554 -42312566 - L1MD1 LINE L1 -360 5882 5338 3 1449 307 339 26 26 chr4 113317765 113317880 -42312240 - PB1D10 SINE Alu 0 117 3 3 1449 546 43 0 0 chr4 113317901 113317970 -42312150 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 3 1449 11808 104 9 2 chr4 113317982 113320370 -42309750 - L1_Mus1 LINE L1 0 6567 4164 3 1449 2760 89 48 8 chr4 113320370 113320765 -42309355 + RLTR10A LTR ERVK 1 411 0 3 1449 4096 119 22 52 chr4 113320767 113321477 -42308643 + RLTR10-int LTR ERVK 304 992 -995 3 1449 502 301 126 7 chr4 113321617 113321911 -42308209 + IAP-d-int LTR ERVK 822 1150 -5392 3 1449 2120 99 0 17 chr4 113321993 113322290 -42307830 + RLTR10-int LTR ERVK 990 1281 -706 3 1449 5333 80 1 17 chr4 113322438 113323162 -42306958 + RLTR10-int LTR ERVK 1274 1986 -1 3 1449 2799 94 40 5 chr4 113323162 113323559 -42306561 + RLTR10A LTR ERVK 1 411 0 3 1449 17660 126 12 8 chr4 113323559 113327690 -42302430 - L1VL1 LINE L1 -1714 4169 217 3 1449 6795 284 41 17 chr4 113327766 113330168 -42299952 - MurERV4-int LTR ERVK -2773 2487 27 3 1449 1184 300 28 38 chr4 113330241 113330712 -42299408 - RMER4A LTR ERVK 0 466 1 3 1449 342 0 0 0 chr4 113330747 113330785 -42299335 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 3 1449 281 342 37 70 chr4 113331261 113331475 -42298645 - RMER15-int LTR ERVL -560 4439 4233 3 1449 365 301 35 0 chr4 113331660 113331763 -42298357 + RMER12 LTR ERVK 4 110 -1212 3 1449 4691 152 31 62 chr4 113331763 113332687 -42297433 + RLTR13D6 LTR ERVK 1 870 -32 3 1449 727 242 3 85 chr4 113332692 113332944 -42297176 + RMER12 LTR ERVK 110 358 -1490 3 1449 265 298 46 66 chr4 113333239 113333390 -42296730 + RMER12 LTR ERVK 612 759 -1089 3 1449 304 226 38 68 chr4 113333484 113333617 -42296503 - L1MEe LINE L1 -4058 796 668 3 1449 411 21 0 0 chr4 113333619 113333667 -42296453 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 3 1449 466 274 58 68 chr4 113333667 113333931 -42296189 + RMER12 LTR ERVK 994 1303 -19 3 1449 257 282 52 52 chr4 113335128 113335244 -42294876 - RMER15-int LTR ERVL -4008 991 876 3 1449 4151 51 0 2 chr4 113335445 113335957 -42294163 - L1Md_F3 LINE L1 -4 6580 6070 3 1449 4453 42 86 0 chr4 113335957 113336652 -42293468 + L1Md_F3 LINE L1 5330 6083 -501 3 1449 1152 42 0 0 chr4 113336705 113336847 -42293273 + (TC)n Simple_repeat Simple_repeat 2 143 0 3 1449 315 49 0 0 chr4 113336847 113336887 -42293233 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1449 5644 277 55 25 chr4 113338267 113338959 -42291161 - MurERV4-int LTR ERVK -1993 3267 2552 3 1449 462 18 0 0 chr4 113338959 113339014 -42291106 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1449 444 82 0 0 chr4 113339014 113339074 -42291046 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 3 1449 5644 277 55 25 chr4 113339074 113339380 -42290740 - MurERV4-int LTR ERVK -2709 2551 2224 3 1449 947 89 0 121 chr4 113339380 113339546 -42290574 - B1_Mus1 SINE Alu -1 147 2 3 1449 5644 275 75 20 chr4 113339546 113341491 -42288629 - MurERV4-int LTR ERVK -3037 2223 186 3 1449 1326 58 0 0 chr4 113341491 113341752 -42288368 + (GAA)n Simple_repeat Simple_repeat 1 261 0 3 1449 2897 274 54 14 chr4 113341752 113341888 -42288232 - MurERV4-int LTR ERVK -5075 185 45 3 1449 391 214 47 28 chr4 113341992 113342098 -42288022 - RMER4B LTR ERVK -5 580 473 3 1449 308 219 22 79 chr4 113342202 113342291 -42287829 - RMER15-int LTR ERVL -671 4328 4245 3 1449 1167 264 149 51 chr4 113342487 113343062 -42287058 + RMER12 LTR ERVK 1 576 -1272 3 1449 26 74 0 0 chr4 113343272 113343326 -42286794 + AT_rich Low_complexity Low_complexity 1 54 0 3 1449 514 264 79 83 chr4 113343385 113343625 -42286495 + RMER12 LTR ERVK 980 1218 -104 3 1449 231 229 0 0 chr4 113343645 113343693 -42286427 + RLTR21 LTR ERVK 1524 1571 -1 3 1449 712 356 80 7 chr4 113344392 113344816 -42285304 - RMER15-int LTR ERVL -3475 1524 1070 3 1449 335 405 16 16 chr4 113345424 113345680 -42284440 - RMER15-int LTR ERVL -4622 377 122 3 1449 207 173 0 0 chr4 113345772 113345824 -42284296 + (CAT)n Simple_repeat Simple_repeat 2 53 0 3 1449 233 333 30 55 chr4 113345872 113346037 -42284083 - RMER15 LTR ERVL -96 479 319 3 1449 1112 279 3 0 chr4 113346725 113347041 -42283079 - MurERV4-int LTR ERVK -1993 3267 2951 3 1449 746 211 87 0 chr4 113347050 113347211 -42282909 + L1VL2 LINE L1 64 238 -6097 3 1449 16156 173 13 5 chr4 113347206 113347802 -42282318 + L1_Mm LINE L1 1435 2027 -3856 3 1449 198 0 0 0 chr4 113347802 113347824 -42282296 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1449 16156 173 13 5 chr4 113347824 113350382 -42279738 + L1_Mm LINE L1 2028 4614 -1269 3 1449 332 180 0 0 chr4 113350382 113350432 -42279688 + B1_Mur4 SINE Alu 1 50 -100 3 1449 320 309 83 41 chr4 113350432 113350527 -42279593 + B4A SINE B4 86 236 -56 3 1449 2064 174 0 6 chr4 113350527 113350891 -42279229 + L1_Mm LINE L1 5492 5853 -30 3 1449 6948 140 17 11 chr4 113350892 113351918 -42278202 + MusHAL1 LINE L1 903 1936 -776 3 1449 255 31 0 0 chr4 113351918 113351950 -42278170 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1449 6948 140 17 11 chr4 113351950 113352168 -42277952 + MusHAL1 LINE L1 1937 2154 -558 3 1449 4074 200 7 2 chr4 113352149 113353001 -42277119 + Lx2 LINE L1 4467 5322 -561 3 1449 8279 30 0 0 chr4 113353004 113354568 -42275552 - L1Md_T LINE L1 0 6582 5018 3 1449 7011 172 20 17 chr4 113354566 113354618 -42275502 + Lx2 LINE L1 5681 5723 -1274 3 1449 433 126 21 21 chr4 113354618 113354706 -42275414 + L1Md_F3 LINE L1 6487 6575 -9 3 1449 450 0 0 0 chr4 113354706 113354756 -42275364 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1449 7011 172 20 17 chr4 113354764 113356023 -42274097 + Lx2 LINE L1 5724 6996 -1 3 1449 32 26 0 0 chr4 113356052 113356091 -42274029 + AT_rich Low_complexity Low_complexity 1 39 0 3 1449 699 35 0 0 chr4 113356151 113356237 -42273883 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 3 1449 345 311 98 8 chr4 113356311 113356444 -42273676 + RMER12 LTR ERVK 1074 1218 -104 3 1449 331 375 62 16 chr4 113357090 113357399 -42272721 - RMER15-int LTR ERVL -3353 1646 1324 3 1449 381 309 70 41 chr4 113357631 113357716 -42272404 - RMER15-int LTR ERVL -3945 1054 969 3 1449 2726 111 5 20 chr4 113357716 113358122 -42271998 - MTB LTR MaLR 0 400 1 3 1449 381 309 70 41 chr4 113358122 113358208 -42271912 - RMER15-int LTR ERVL -4031 968 878 3 1449 250 397 5 21 chr4 113358681 113358869 -42271251 - RMER15-int LTR ERVL -4640 359 175 3 1449 1051 94 0 0 chr4 113358875 113359013 -42271107 + B1_Mus2 SINE Alu 1 138 -9 3 1449 359 56 19 0 chr4 113359013 113359067 -42271053 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1449 2054 249 20 4 chr4 113360134 113360689 -42269431 - MurERV4-int LTR ERVK -1993 3267 2704 3 1449 1427 253 34 5 chr4 113360709 113361090 -42269030 - MurERV4-int LTR ERVK -2608 2652 2261 3 1449 3032 292 13 20 chr4 113361076 113362050 -42268070 - MurERV4-int LTR ERVK -3125 2135 1169 3 1449 220 127 0 45 chr4 113362091 113362157 -42267963 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1449 1395 267 75 31 chr4 113362158 113362638 -42267482 - MurERV4-int LTR ERVK -4759 501 1 3 1449 240 130 0 0 chr4 113362638 113362684 -42267436 - RMER4A LTR ERVK 0 466 421 3 1449 1558 246 21 51 chr4 113362713 113363185 -42266935 - RMER4A LTR ERVK -8 458 1 3 1449 2445 291 14 16 chr4 113363275 113364034 -42266086 - MurERV4-int LTR ERVK -2897 2363 1606 3 1449 2105 264 104 56 chr4 113364084 113365345 -42264775 - MurERV4-int LTR ERVK -3922 1338 17 3 1449 1388 277 22 39 chr4 113365406 113365865 -42264255 - RMER4A LTR ERVK 0 466 16 3 1449 2860 90 5 19 chr4 113365865 113366286 -42263834 + L1Md_F2 LINE L1 6156 6570 -12 3 1449 12609 165 11 8 chr4 113366500 113369631 -42260489 - L1_Mus4 LINE L1 0 6636 3493 3 1449 740 294 81 55 chr4 113369692 113370245 -42259875 - L1VL4 LINE L1 -5688 614 158 3 1449 264 296 50 50 chr4 113370469 113370629 -42259491 - RMER15-int LTR ERVL -157 4842 4683 3 1449 329 325 37 43 chr4 113370635 113370796 -42259324 - RMER15-int LTR ERVL -563 4436 4277 3 1449 1816 62 0 0 chr4 113370798 113371023 -42259097 + L1Md_F2 LINE L1 5362 5586 -297 3 1449 8079 51 0 0 chr4 113371023 113372018 -42258102 + L1Md_F2 LINE L1 5587 6581 -1 3 1449 186 43 0 0 chr4 113372196 113372219 -42257901 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1449 1175 234 44 7 chr4 113372441 113372738 -42257382 + RMER12 LTR ERVK 1 308 -1014 3 1449 252 0 0 0 chr4 113372781 113372809 -42257311 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1449 242 307 109 19 chr4 113372953 113373097 -42257023 + RMER12 LTR ERVK 703 857 -547 3 1449 980 120 7 0 chr4 113373097 113373239 -42256881 - B1_Mus1 SINE Alu -5 143 1 3 1449 242 307 109 19 chr4 113373239 113373250 -42256870 + RMER12 LTR ERVK 858 871 -533 3 1449 28 0 0 0 chr4 113373401 113373429 -42256691 + AT_rich Low_complexity Low_complexity 1 28 0 3 1449 495 0 0 0 chr4 113373525 113373580 -42256540 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1449 243 0 0 0 chr4 113373609 113373636 -42256484 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 3 1449 431 282 67 84 chr4 113373637 113373862 -42256258 + RMER12 LTR ERVK 994 1214 -108 3 1449 259 213 0 118 chr4 113373847 113373932 -42256188 + RLTR21 LTR ERVK 1497 1571 -1 3 1449 665 354 75 45 chr4 113374322 113374854 -42255266 - RMER15-int LTR ERVL -3128 1871 1324 3 181 6484 276 34 8 chr4 113376943 113378993 -42251127 - MurERV4-int LTR ERVK -1993 3267 1165 3 1450 988 272 63 72 chr4 113378993 113379568 -42250552 + RMER12 LTR ERVK 32 808 -596 3 1450 283 373 79 49 chr4 113380164 113380570 -42249550 - RMER15-int LTR ERVL -3503 1496 1079 3 1450 3264 53 2 0 chr4 113380723 113381118 -42249002 + MTA_Mm LTR MaLR 1 396 0 3 1450 6722 96 28 87 chr4 113381118 113382284 -42247836 + MTA_Mm-int LTR MaLR 1 1098 0 3 1450 3356 45 0 0 chr4 113382284 113382680 -42247440 + MTA_Mm LTR MaLR 1 396 0 3 1450 222 37 0 0 chr4 113383224 113383251 -42246869 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 1450 984 98 0 0 chr4 113383251 113383384 -42246736 - B1_Mus2 SINE Alu -13 134 2 3 1450 1443 170 15 0 chr4 113383932 113384202 -42245918 + BGLII LTR ERVK 147 420 -1 3 1450 566 249 0 43 chr4 113384568 113384778 -42245342 + RMER3D-int LTR ERVK 652 852 -1990 3 1450 489 209 35 0 chr4 113384908 113385023 -42245097 + RMER3D-int LTR ERVK 487 605 -2237 4 1450 1470 222 111 17 chr4 113385030 113385508 -42244612 + RMER3D-int LTR ERVK 1011 1533 -1309 4 1450 436 236 48 41 chr4 113385534 113385680 -42244440 + RMER3D-int LTR ERVK 1532 1678 -1164 4 1450 1329 232 64 62 chr4 113385705 113386238 -42243882 + RMER3D-int LTR ERVK 1930 2463 -379 4 1450 506 238 49 54 chr4 113386273 113386477 -42243643 + RMER3D-int LTR ERVK 2635 2837 -5 4 1450 2101 170 22 2 chr4 113386482 113386895 -42243225 + BGLII LTR ERVK 1 421 0 4 1450 2423 297 36 37 chr4 113387035 113388374 -42241746 - MurERV4-int LTR ERVK -2029 3231 1895 4 1450 844 288 27 30 chr4 113388908 113389244 -42240876 - MurERV4-int LTR ERVK -2590 2670 2336 4 1450 428 51 17 0 chr4 113389244 113389303 -42240817 + (TTTTC)n Simple_repeat Simple_repeat 2 61 0 4 1450 1132 297 24 38 chr4 113389313 113389863 -42240257 - MurERV4-int LTR ERVK -2933 2327 1786 4 1450 28091 136 27 9 chr4 113389887 113394142 -42235978 + L1_Mus1 LINE L1 380 4733 -1150 4 1450 197 33 33 0 chr4 113394142 113394172 -42235948 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1450 28091 100 13 5 chr4 113394172 113396006 -42234114 + L1_Mus1 LINE L1 4734 6566 -1 4 1450 2221 311 15 15 chr4 113396033 113396889 -42233231 - MurERV4-int LTR ERVK -3483 1777 922 4 1450 343 331 109 72 chr4 113396930 113397360 -42232760 - RMER15-int LTR ERVL -3475 1524 1079 4 1450 377 388 14 28 chr4 113397987 113398202 -42231918 - RMER15-int LTR ERVL -4638 361 150 4 1450 273 351 51 36 chr4 113398307 113398502 -42231618 - RMER15 LTR ERVL -24 551 354 4 1450 1388 191 7 4 chr4 113399134 113399408 -42230712 + BGLII LTR ERVK 147 421 0 4 1450 545 260 0 43 chr4 113399778 113399987 -42230133 + RMER3D-int LTR ERVK 652 851 -1991 4 1450 1029 199 9 29 chr4 113400242 113400599 -42229521 + RMER3D-int LTR ERVK 1014 1413 -1429 4 1450 946 204 35 108 chr4 113400618 113400932 -42229188 + RMER3D-int LTR ERVK 1404 1694 -1148 4 1450 2584 232 50 45 chr4 113400941 113401852 -42228268 + RMER3D-int LTR ERVK 1925 2840 -2 4 1450 2154 155 62 0 chr4 113401863 113402250 -42227870 + BGLII LTR ERVK 11 421 0 4 1450 4346 318 34 28 chr4 113402390 113404657 -42225463 - MurERV4-int LTR ERVK -2029 3231 951 4 1450 378 365 16 11 chr4 113404726 113404917 -42225203 - RMER15-int LTR ERVL -3475 1524 1333 4 1450 256 402 14 32 chr4 113405731 113405947 -42224173 - RMER15-int LTR ERVL -4638 361 150 4 1450 257 346 68 0 chr4 113406046 113406179 -42223941 - RMER15 LTR ERVL -19 556 415 4 1450 1385 180 30 0 chr4 113406878 113407145 -42222975 + BGLII LTR ERVK 147 421 0 4 1450 506 260 5 39 chr4 113407515 113407723 -42222397 + RMER3D-int LTR ERVK 652 852 -1990 4 1450 556 144 51 10 chr4 113407855 113407953 -42222167 + RMER3D-int LTR ERVK 489 590 -2252 4 1450 593 208 211 15 chr4 113407978 113408244 -42221876 + RMER3D-int LTR ERVK 1014 1331 -1511 4 1450 277 308 8 41 chr4 113409441 113409563 -42220557 - RMER15 LTR ERVL -96 479 362 4 1450 360 0 0 0 chr4 113409959 113409999 -42220121 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1450 21 36 0 0 chr4 113410141 113410169 -42219951 + AT_rich Low_complexity Low_complexity 1 28 0 4 1450 1629 121 7 29 chr4 113410232 113410513 -42219607 + BGLII LTR ERVK 147 421 0 4 1450 605 239 119 47 chr4 113410889 113411324 -42218796 + RMER3D-int LTR ERVK 401 1079 -1763 4 1450 392 212 12 0 chr4 113411334 113411414 -42218706 + RMER3D-int LTR ERVK 1014 1094 -1748 4 1450 936 232 13 4 chr4 113411456 113411694 -42218426 + RMER3D-int LTR ERVK 1180 1419 -1423 4 1450 186 43 0 0 chr4 113411705 113411728 -42218392 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1450 1903 243 98 33 chr4 113412053 113412999 -42217121 + RMER3D-int LTR ERVK 1305 2842 0 4 1450 1865 190 36 22 chr4 113412999 113413414 -42216706 + BGLII LTR ERVK 1 421 0 4 1450 2724 293 50 36 chr4 113413549 113414997 -42215123 - MurERV4-int LTR ERVK -2029 3231 1764 4 1450 1901 286 9 14 chr4 113414999 113415634 -42214486 - MurERV4-int LTR ERVK -3707 1553 922 4 1450 321 363 0 40 chr4 113415724 113415876 -42214244 - RMER15-int LTR ERVL -3522 1477 1332 4 1450 1428 199 17 3 chr4 113417827 113418124 -42211996 + BGLII LTR ERVK 119 419 -2 4 1450 1098 84 0 0 chr4 113418137 113418280 -42211840 + B1_Mm SINE Alu 2 144 -3 4 1450 532 236 109 60 chr4 113418611 113419056 -42211064 + RMER3D-int LTR ERVK 486 1079 -1763 4 1450 889 224 158 12 chr4 113419074 113419422 -42210698 + RMER3D-int LTR ERVK 1014 1412 -1430 4 1450 6693 117 14 3 chr4 113419426 113421071 -42209049 - L1_Mus1 LINE L1 -1 6566 4906 4 1450 7926 132 8 2 chr4 113421068 113422377 -42207743 - L1_Mus1 LINE L1 -1417 4466 3150 4 1450 189 0 0 0 chr4 113422377 113422398 -42207722 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1450 2294 197 22 26 chr4 113422413 113422872 -42207248 - Lx2A1 LINE L1 -6 7002 6546 4 1450 774 172 69 0 chr4 113422874 113423019 -42207101 + Lx2B LINE L1 6418 6572 -428 4 1450 411 21 0 0 chr4 113423206 113423254 -42206866 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1450 39 22 0 0 chr4 113423260 113423306 -42206814 + AT_rich Low_complexity Low_complexity 1 46 0 4 1450 18356 49 194 7 chr4 113423306 113426935 -42203185 - L1Md_T LINE L1 0 6582 2199 4 1450 1963 244 58 45 chr4 113426942 113427714 -42202406 + RMER3D-int LTR ERVK 2061 2842 0 4 1450 2111 176 24 0 chr4 113427716 113428125 -42201995 + BGLII LTR ERVK 3 421 0 4 1450 4450 317 28 24 chr4 113428263 113430497 -42199623 - MurERV4-int LTR ERVK -2027 3233 990 4 1450 317 352 12 18 chr4 113430628 113430793 -42199327 - RMER15-int LTR ERVL -3491 1508 1345 4 1450 1250 180 11 25 chr4 113431406 113431685 -42198435 + BGLII LTR ERVK 147 421 0 4 1450 488 233 35 45 chr4 113432059 113432261 -42197859 + RMER3D-int LTR ERVK 652 851 -1991 4 1450 263 135 0 0 chr4 113432313 113432350 -42197770 + MT2C_Mm LTR ERVL 199 235 -240 4 1450 949 118 24 8 chr4 113432325 113432480 -42197640 + B1_Mus2 SINE Alu 6 311 0 4 1450 233 292 148 52 chr4 113432480 113432503 -42197617 + FAM SINE Alu 294 310 -1 4 1450 583 124 51 10 chr4 113432590 113432688 -42197432 + RMER3D-int LTR ERVK 489 590 -2252 4 1450 1711 203 112 17 chr4 113432712 113433185 -42196935 + RMER3D-int LTR ERVK 1016 1533 -1309 4 1450 329 233 37 55 chr4 113433211 113433320 -42196800 + RMER3D-int LTR ERVK 1532 1638 -1204 4 1450 1559 269 62 58 chr4 113433401 113434300 -42195820 + RMER3D-int LTR ERVK 1938 2840 -2 4 1450 2332 145 19 0 chr4 113434301 113434714 -42195406 + BGLII LTR ERVK 1 421 0 4 1450 2920 299 34 18 chr4 113434854 113436219 -42193901 - MurERV4-int LTR ERVK -2029 3231 1845 4 1450 406 309 42 75 chr4 113436219 113436460 -42193660 - RMER12 LTR ERVK 0 1322 1090 4 1450 5011 119 38 4 chr4 113436689 113437497 -42192623 - RLTR22_Mus LTR ERVK -972 836 1 4 1450 2329 299 27 17 chr4 113437497 113438390 -42191730 - MurERV4-int LTR ERVK -3410 1850 949 4 1450 37 0 0 0 chr4 113438548 113438585 -42191535 + AT_rich Low_complexity Low_complexity 1 37 0 4 1450 3677 58 76 0 chr4 113438597 113439081 -42191039 - L1Md_F2 LINE L1 -1 6581 6061 4 1450 276 299 66 33 chr4 113439299 113439420 -42190700 - RMER15-int LTR ERVL -3792 1207 1083 4 1450 229 336 65 0 chr4 113440398 113440505 -42189615 - RMER15 LTR ERVL -45 530 417 4 1450 1629 171 10 0 chr4 113441191 113441490 -42188630 + BGLII LTR ERVK 119 420 -1 4 1450 559 250 0 39 chr4 113441867 113442071 -42188049 + RMER3D-int LTR ERVK 655 850 -1992 4 1450 1231 238 12 22 chr4 113442238 113442560 -42187560 + RMER3D-int LTR ERVK 1214 1532 -1310 4 1450 461 225 28 42 chr4 113442591 113442735 -42187385 + RMER3D-int LTR ERVK 1538 1679 -1163 4 1450 2189 240 77 58 chr4 113442754 113443044 -42187076 + RMER3D-int LTR ERVK 1925 2216 -626 4 1450 207 0 0 0 chr4 113443044 113443067 -42187053 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1450 498 17 0 0 chr4 113443067 113443125 -42186995 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1450 2189 240 77 58 chr4 113443125 113443734 -42186386 + RMER3D-int LTR ERVK 2217 2841 -1 4 1450 2145 144 42 5 chr4 113443734 113444140 -42185980 + BGLII LTR ERVK 1 421 0 4 1450 2297 284 53 33 chr4 113444280 113445160 -42184960 - MurERV4-int LTR ERVK -2029 3231 2334 4 1450 387 0 0 0 chr4 113445160 113445203 -42184917 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1450 2297 284 53 33 chr4 113445203 113445422 -42184698 - MurERV4-int LTR ERVK -2927 2333 2110 4 1450 240 35 0 0 chr4 113445422 113445451 -42184669 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1450 24692 123 12 2 chr4 113445476 113450151 -42179969 - L1_Mus2 LINE L1 0 6566 1845 4 1450 2798 183 11 15 chr4 113450130 113451111 -42179009 - L1_Mus2 LINE L1 -2458 1456 516 4 1450 342 0 56 19 chr4 113451111 113451165 -42178955 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 4 1450 2376 241 56 136 chr4 113451165 113451498 -42178622 - L1_Mus2 LINE L1 -6103 535 242 4 1450 21 0 0 0 chr4 113451570 113451591 -42178529 + AT_rich Low_complexity Low_complexity 1 21 0 4 1450 1696 322 52 27 chr4 113451743 113452678 -42177442 - MurERV4-int LTR ERVK -3380 1880 922 4 1450 274 300 72 40 chr4 113453021 113453146 -42176974 - RMER15-int LTR ERVL -3789 1210 1082 4 1450 1443 172 19 0 chr4 113454921 113455189 -42174931 + BGLII LTR ERVK 147 419 -2 4 1450 712 205 0 43 chr4 113455546 113455755 -42174365 + RMER3D-int LTR ERVK 652 851 -1991 4 1450 416 165 0 25 chr4 113455896 113455977 -42174143 + MYSERV16_I-int LTR ERVK 493 571 -2271 4 1450 7724 62 7 0 chr4 113456005 113457432 -42172688 - L1Md_F3 LINE L1 -14 6570 5134 4 1450 1701 34 0 0 chr4 113457427 113457633 -42172487 + L1_Mm LINE L1 4329 4534 -1349 4 1450 34533 59 8 21 chr4 113457633 113462933 -42167187 + L1Md_A LINE L1 355 5586 -297 4 1450 8244 33 11 0 chr4 113462934 113463915 -42166205 + L1Md_A LINE L1 5588 6579 -3 4 1450 4460 65 47 0 chr4 113463915 113464511 -42165609 + L1_Mm LINE L1 4524 5147 -736 4 1450 1753 223 199 17 chr4 113464565 113465627 -42164493 + MYSERV16_I-int LTR ERVK 1014 2267 -59 4 1450 1012 235 81 19 chr4 113465673 113466119 -42164001 + MYSERV16_I-int LTR ERVK 1853 2262 -64 4 1450 2256 174 12 2 chr4 113466119 113466528 -42163592 + BGLII LTR ERVK 1 413 -8 4 1450 3807 314 35 48 chr4 113466676 113467798 -42162322 - MurERV4-int LTR ERVK -2029 3231 2144 4 1450 1083 102 0 20 chr4 113467798 113467948 -42162172 - B1_Mus2 SINE Alu 0 147 1 4 1450 3807 314 35 48 chr4 113467948 113469137 -42160983 - MurERV4-int LTR ERVK -3117 2143 951 4 1450 551 343 91 26 chr4 113469214 113469633 -42160487 - RMER15-int LTR ERVL -3475 1524 1079 4 1450 423 378 40 35 chr4 113470078 113470476 -42159644 - RMER15-int LTR ERVL -4450 549 150 4 1450 262 288 15 60 chr4 113470642 113470775 -42159345 - RMER15 LTR ERVL -95 480 354 4 1450 4641 132 38 76 chr4 113470988 113471925 -42158195 + RMER17A2 LTR ERVK 1 902 -4 4 1450 1657 135 4 0 chr4 113472024 113472298 -42157822 + BGLII LTR ERVK 147 421 0 4 1450 578 247 10 84 chr4 113472669 113472978 -42157142 + RMER3D-int LTR ERVK 655 940 -1902 4 1450 456 202 52 9 chr4 113473004 113473119 -42157001 + RMER3D-int LTR ERVK 486 605 -2237 4 1450 1932 219 104 68 chr4 113473130 113473772 -42156348 + RMER3D-int LTR ERVK 1015 1679 -1163 4 1450 2264 257 33 49 chr4 113473790 113474723 -42155397 + RMER3D-int LTR ERVK 1925 2842 0 4 1450 2373 151 24 10 chr4 113474724 113475138 -42154982 + BGLII LTR ERVK 2 421 0 4 1450 3065 266 52 25 chr4 113475278 113475830 -42154290 - MurERV4-int LTR ERVK -2029 3231 2675 4 1450 4813 169 65 6 chr4 113475830 113476732 -42153388 + RMER17B LTR ERVK 3 958 0 4 1450 3065 266 52 25 chr4 113476732 113477054 -42153066 - MurERV4-int LTR ERVK -2586 2674 2334 4 1450 408 20 0 0 chr4 113477054 113477103 -42153017 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1450 3065 266 52 25 chr4 113477103 113477354 -42152766 - MurERV4-int LTR ERVK -2927 2333 2075 4 1450 412 234 33 77 chr4 113477410 113477568 -42152552 + RLTR10A LTR ERVK 114 286 -125 4 1450 369 225 12 0 chr4 113477572 113477652 -42152468 + RLTR10-int LTR ERVK 221 301 -1686 4 1450 2782 309 15 18 chr4 113477692 113478802 -42151318 - MurERV4-int LTR ERVK -3232 2028 922 4 1450 384 365 29 44 chr4 113479898 113480170 -42149950 - RMER15-int LTR ERVL -4638 361 94 4 1450 588 14 0 0 chr4 113480372 113480441 -42149679 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1450 1539 156 19 0 chr4 113481096 113481366 -42148754 + BGLII LTR ERVK 147 421 0 4 1450 3326 304 27 31 chr4 113481679 113481805 -42148315 - MurERV4-int LTR ERVK -2787 2473 2346 4 1450 960 120 0 0 chr4 113481805 113481955 -42148165 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 4 1450 3326 304 27 31 chr4 113481955 113482680 -42147440 - MurERV4-int LTR ERVK -2915 2345 1623 4 1450 3758 175 38 26 chr4 113482680 113483480 -42146640 + RMER17D2 LTR ERVK 1 809 0 4 1450 3326 304 27 31 chr4 113483480 113483676 -42146444 - MurERV4-int LTR ERVK -3638 1622 1436 4 1450 348 83 0 0 chr4 113483676 113483724 -42146396 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1450 3326 304 27 31 chr4 113483724 113484165 -42145955 - MurERV4-int LTR ERVK -3825 1435 993 4 1450 416 359 0 6 chr4 113484293 113484461 -42145659 - RMER15-int LTR ERVL -3488 1511 1345 4 1450 245 355 75 46 chr4 113485637 113485811 -42144309 - RMER15 LTR ERVL -18 557 379 4 1450 337 143 18 0 chr4 113485965 113486021 -42144099 - B1_Mus2 SINE Alu 0 147 91 4 1450 378 237 9 120 chr4 113486022 113486084 -42144036 - MT2B LTR ERVL -261 323 195 4 1450 719 78 0 10 chr4 113486084 113486188 -42143932 - B1_Mus2 SINE Alu -44 103 1 4 1450 378 237 9 120 chr4 113486188 113486206 -42143914 - MT2B LTR ERVL -261 194 153 4 1450 1412 189 19 0 chr4 113486742 113487012 -42143108 + BGLII LTR ERVK 147 421 0 4 1450 635 228 5 48 chr4 113487387 113487594 -42142526 + RMER3D-int LTR ERVK 652 849 -1993 4 1450 2912 63 13 3 chr4 113487751 113488135 -42141985 + L1Md_F3 LINE L1 6194 6581 -3 4 1450 436 149 14 0 chr4 113488180 113488254 -42141866 + RMER3D-int LTR ERVK 489 563 -2279 4 1450 408 254 23 16 chr4 113488302 113488430 -42141690 + RMER3D-int LTR ERVK 1015 1143 -1699 4 1450 593 255 17 128 chr4 113488680 113488977 -42141143 + RMER3D-int LTR ERVK 1416 1679 -1163 4 1450 2341 247 40 55 chr4 113488994 113489925 -42140195 + RMER3D-int LTR ERVK 1925 2841 -1 4 1450 2218 168 9 16 chr4 113489925 113490349 -42139771 + BGLII LTR ERVK 1 421 0 4 1450 4152 318 26 35 chr4 113490502 113492802 -42137318 - MurERV4-int LTR ERVK -2029 3231 951 4 1450 180 0 0 0 chr4 113493175 113493195 -42136925 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1450 310 306 64 32 chr4 113493196 113493321 -42136799 - RMER15-int LTR ERVL -3792 1207 1079 4 1450 21 36 0 0 chr4 113493704 113493732 -42136388 + AT_rich Low_complexity Low_complexity 1 28 0 4 1450 22 0 0 0 chr4 113495012 113495034 -42135086 + AT_rich Low_complexity Low_complexity 1 22 0 4 1450 864 237 55 43 chr4 113495080 113495336 -42134784 + BGLII LTR ERVK 163 421 0 4 1450 557 226 5 48 chr4 113495708 113495917 -42134203 + RMER3D-int LTR ERVK 652 851 -1991 4 1450 552 162 38 0 chr4 113496050 113496155 -42133965 + RMER3D-int LTR ERVK 489 597 -2245 4 1450 1686 223 92 78 chr4 113496173 113496854 -42133266 + RMER3D-int LTR ERVK 1014 1704 -1138 4 1450 1963 257 47 63 chr4 113496844 113497774 -42132346 + RMER3D-int LTR ERVK 1928 2842 0 4 1450 2206 168 14 28 chr4 113497777 113498163 -42131957 + BGLII LTR ERVK 6 391 -30 4 1450 3370 191 177 7 chr4 113498163 113498542 -42131578 - RMER17A2 LTR ERVK 0 906 447 4 1450 747 33 0 0 chr4 113498542 113498632 -42131488 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1450 3370 191 177 7 chr4 113498632 113499026 -42131094 - RMER17A2 LTR ERVK -460 446 2 4 1450 2206 168 14 28 chr4 113499026 113499061 -42131059 + BGLII LTR ERVK 392 421 0 4 1450 1335 291 57 28 chr4 113499278 113499985 -42130135 - MurERV4-int LTR ERVK -2126 3134 2408 4 1450 552 15 0 0 chr4 113500046 113500111 -42130009 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1450 2538 328 27 20 chr4 113500118 113501422 -42128698 - MurERV4-int LTR ERVK -2932 2328 1016 2 1450 464 356 0 6 chr4 113501559 113501740 -42128380 - RMER15-int LTR ERVL -3474 1525 1346 3 1450 22 0 0 0 chr4 113503459 113503481 -42126639 + AT_rich Low_complexity Low_complexity 1 22 0 4 1450 21 36 0 0 chr4 113503668 113503696 -42126424 + AT_rich Low_complexity Low_complexity 1 28 0 5 1450 361 222 37 0 chr4 113503733 113503868 -42126252 + BGLII LTR ERVK 119 258 -163 6 1450 313 171 0 67 chr4 113503960 113504035 -42126085 + RMER3D-int LTR ERVK 654 723 -2119 7 1450 578 228 16 0 chr4 113504040 113504167 -42125953 + BGLII LTR ERVK 270 398 -23 6 1450 505 252 0 43 chr4 113504548 113504755 -42125365 + RMER3D-int LTR ERVK 652 849 -1993 8 1450 25556 107 3 2 chr4 113504933 113505967 -42124153 + L1Md_F2 LINE L1 837 1973 -3913 9 1450 410 0 0 20 chr4 113505967 113506018 -42124102 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 181 25556 101 4 2 chr4 113506018 113509051 -42121069 + L1Md_F2 LINE L1 1974 5005 -881 9 1451 33645 46 20 18 chr4 113509022 113513521 -42116599 + L1Md_A LINE L1 361 4942 -941 1 1451 239 160 45 148 chr4 113513521 113513609 -42116511 - RMER20A LTR ERVK -268 248 170 1 1451 33645 46 20 18 chr4 113513609 113514240 -42115880 + L1Md_A LINE L1 4943 5586 -297 1 1451 7840 54 1 0 chr4 113514240 113515250 -42114870 + L1Md_T LINE L1 5587 6582 0 1 1451 4141 94 8 7 chr4 113515268 113515866 -42114254 + L1Md_F2 LINE L1 4990 5588 -298 9 1451 6629 87 43 9 chr4 113515867 113516819 -42113301 + L1Md_F2 LINE L1 5590 6573 -12 9 1451 369 243 35 7 chr4 113516823 113516968 -42113152 + RMER3D-int LTR ERVK 2693 2841 -1 8 1451 425 289 87 37 chr4 113516973 113517214 -42112906 + BGLII LTR ERVK 6 258 -163 8 1451 1404 176 17 14 chr4 113517212 113517500 -42112620 + BGLII LTR ERVK 133 421 0 1 1451 1181 305 38 19 chr4 113517642 113518280 -42111840 - MurERV4-int LTR ERVK -2029 3231 2582 1 1451 2362 331 23 21 chr4 113518584 113519865 -42110255 - MurERV4-int LTR ERVK -3021 2239 956 1 1451 386 287 137 14 chr4 113520451 113520670 -42109450 - MurERV4-int LTR ERVK -3240 2540 2295 1 1451 2436 321 40 18 chr4 113520810 113522066 -42108054 - MurERV4-int LTR ERVK -3021 2239 957 1 1451 2379 328 26 25 chr4 113523012 113524294 -42105826 - MurERV4-int LTR ERVK -3021 2239 956 1 1451 374 287 137 14 chr4 113524880 113525099 -42105021 - MurERV4-int LTR ERVK -3240 2540 2295 1 1451 2422 321 40 18 chr4 113525237 113526494 -42103626 - MurERV4-int LTR ERVK -3021 2239 956 1 1451 2429 339 28 21 chr4 113527124 113528721 -42101399 - MurERV4-int LTR ERVK -3311 2469 956 1 1451 432 0 0 0 chr4 113530769 113530817 -42099303 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2 1451 21 36 0 0 chr4 113530955 113530983 -42099137 + AT_rich Low_complexity Low_complexity 1 28 0 2 1451 1290 210 41 3 chr4 113531020 113531312 -42098808 + BGLII LTR ERVK 119 421 0 2 1451 439 265 0 43 chr4 113531686 113531895 -42098225 + RMER3D-int LTR ERVK 652 851 -1991 2 1451 443 224 35 0 chr4 113532028 113532144 -42097976 + RMER3D-int LTR ERVK 489 608 -2234 2 1451 585 239 22 21 chr4 113532151 113532458 -42097662 + RMER3D-int LTR ERVK 1014 1372 -1470 2 1451 596 120 10 0 chr4 113532469 113532569 -42097551 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1451 333 261 0 57 chr4 113532572 113532694 -42097426 + RMER3D-int LTR ERVK 1419 1533 -1309 2 1451 1540 251 52 61 chr4 113532883 113533536 -42096584 + RMER3D-int LTR ERVK 1924 2570 -272 2 1451 463 196 36 0 chr4 113533524 113533636 -42096484 + RMER3D-int LTR ERVK 2727 2842 0 2 1451 2055 176 25 17 chr4 113533639 113534043 -42096077 + BGLII LTR ERVK 6 412 -9 2 1451 346 195 12 0 chr4 113534045 113534127 -42095993 + MurERV4-int LTR ERVK 3149 3231 -2029 2 1451 2775 202 46 19 chr4 113534262 113535095 -42095025 - RMER17A2 LTR ERVK -10 896 1 2 1451 375 268 0 0 chr4 113535268 113535380 -42094740 - MurERV4-int LTR ERVK -2029 3231 3120 2 1451 35331 59 10 1 chr4 113535441 113539935 -42090185 - L1Md_F3 LINE L1 -18 6566 2027 2 1451 237 33 0 0 chr4 113539935 113539965 -42090155 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1451 35331 105 7 3 chr4 113539965 113541584 -42088536 - L1Md_F3 LINE L1 -3857 2026 446 2 1451 992 82 12 15 chr4 113541929 113542117 -42088003 - L1Md_Gf LINE L1 -5462 1265 1006 3 1451 3267 325 26 22 chr4 113542380 113542861 -42087259 - MurERV4-int LTR ERVK -2429 2831 2343 2 1451 405 0 0 0 chr4 113542861 113542906 -42087214 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1451 3267 325 26 22 chr4 113542906 113544232 -42085888 - MurERV4-int LTR ERVK -2918 2342 1016 2 1451 21 36 0 0 chr4 113545959 113545987 -42084133 + AT_rich Low_complexity Low_complexity 1 28 0 3 1451 385 258 30 18 chr4 113546022 113546188 -42083932 + BGLII LTR ERVK 119 286 -135 3 1451 868 233 149 17 chr4 113546305 113546715 -42083405 + MYSERV16_I-int LTR ERVK 1862 2325 -1 3 1451 1727 215 9 51 chr4 113546722 113546845 -42083275 + BGLII LTR ERVK 8 133 -288 3 1451 638 25 0 12 chr4 113546845 113546926 -42083194 + (GAA)n Simple_repeat Simple_repeat 2 81 0 3 1451 1727 215 9 51 chr4 113546926 113547234 -42082886 + BGLII LTR ERVK 134 421 0 3 1451 3831 324 40 21 chr4 113547379 113549609 -42080511 - MurERV4-int LTR ERVK -2034 3226 956 3 1451 321 331 107 35 chr4 113549796 113550115 -42080005 - RMER15-int LTR ERVL -3579 1420 1079 3 1451 7118 73 6 33 chr4 113551745 113552750 -42077370 + RLTR13A3 LTR ERVK 1 978 0 3 1451 1240 202 23 4 chr4 113552899 113553157 -42076963 + BGLII LTR ERVK 147 409 -12 4 1451 582 235 0 43 chr4 113553539 113553748 -42076372 + RMER3D-int LTR ERVK 652 851 -1991 4 1451 447 221 35 0 chr4 113553882 113553995 -42076125 + RMER3D-int LTR ERVK 489 605 -2237 4 1451 808 268 64 84 chr4 113554096 113554312 -42075808 + RMER3D-int LTR ERVK 1157 1370 -1472 4 1451 392 55 18 0 chr4 113554312 113554367 -42075753 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1451 808 268 64 84 chr4 113554367 113554684 -42075436 + RMER3D-int LTR ERVK 1371 1679 -1163 4 1451 2001 256 51 56 chr4 113554702 113555626 -42074494 + RMER3D-int LTR ERVK 1924 2842 0 4 1451 1974 189 19 29 chr4 113555629 113556014 -42074106 + BGLII LTR ERVK 6 391 -30 4 1451 4246 184 73 9 chr4 113556014 113556865 -42073255 - RMER17A2 LTR ERVK 0 906 2 4 1451 1974 189 19 29 chr4 113556865 113556899 -42073221 + BGLII LTR ERVK 392 421 0 4 1451 3812 317 34 32 chr4 113557036 113557908 -42072212 - MurERV4-int LTR ERVK -2029 3231 2338 4 1451 681 76 0 0 chr4 113557908 113558000 -42072120 + (TCTCCC)n Simple_repeat Simple_repeat 3 94 0 4 1451 3812 317 34 32 chr4 113558000 113559338 -42070782 - MurERV4-int LTR ERVK -2923 2337 1016 4 1451 447 341 6 22 chr4 113559479 113559662 -42070458 - RMER15-int LTR ERVL -3478 1521 1342 4 1451 239 357 30 43 chr4 113560877 113561041 -42069079 - RMER15 LTR ERVL -60 515 354 4 1451 23 0 0 0 chr4 113561590 113561613 -42068507 + AT_rich Low_complexity Low_complexity 1 23 0 4 1451 389 200 37 0 chr4 113561649 113561784 -42068336 + BGLII LTR ERVK 119 258 -163 4 1451 23 33 0 0 chr4 113561847 113561877 -42068243 + AT_rich Low_complexity Low_complexity 1 30 0 5 1451 754 222 7 0 chr4 113561940 113562084 -42068036 + BGLII LTR ERVK 251 395 -26 4 1451 24 32 0 0 chr4 113562530 113562561 -42067559 + AT_rich Low_complexity Low_complexity 1 31 0 5 1451 395 233 12 0 chr4 113562854 113562940 -42067180 + RMER3D-int LTR ERVK 1014 1100 -1742 5 1451 1559 237 19 75 chr4 113562956 113563486 -42066634 + RMER3D-int LTR ERVK 1166 1665 -1177 5 1451 1991 275 33 42 chr4 113563507 113564443 -42065677 + RMER3D-int LTR ERVK 1914 2841 -1 5 1451 1755 210 16 30 chr4 113564443 113564587 -42065533 + BGLII LTR ERVK 1 139 -282 5 1451 600 14 0 0 chr4 113564587 113564656 -42065464 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 5 1451 1755 210 16 30 chr4 113564656 113564938 -42065182 + BGLII LTR ERVK 140 421 0 5 1451 3916 323 30 19 chr4 113565077 113565953 -42064167 - MurERV4-int LTR ERVK -2029 3231 2337 5 1451 777 22 0 0 chr4 113565953 113566044 -42064076 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 1451 3916 323 30 19 chr4 113566044 113567359 -42062761 - MurERV4-int LTR ERVK -2924 2336 1016 5 1451 367 382 6 6 chr4 113567497 113567676 -42062444 - RMER15-int LTR ERVL -3475 1524 1346 4 1451 24 0 0 0 chr4 113567833 113567857 -42062263 + AT_rich Low_complexity Low_complexity 1 24 0 5 1451 26 0 0 0 chr4 113568752 113568778 -42061342 + AT_rich Low_complexity Low_complexity 1 26 0 5 1451 396 0 0 0 chr4 113568778 113568822 -42061298 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1451 6531 61 0 0 chr4 113568848 113569667 -42060453 - L1Md_T LINE L1 0 6582 5764 5 1451 21 36 0 0 chr4 113570499 113570527 -42059593 + AT_rich Low_complexity Low_complexity 1 28 0 6 1451 348 216 37 7 chr4 113570565 113570700 -42059420 + BGLII LTR ERVK 120 258 -163 6 1451 601 269 13 0 chr4 113570845 113571001 -42059119 + BGLII LTR ERVK 241 398 -23 6 1451 571 246 15 39 chr4 113571383 113571586 -42058534 + RMER3D-int LTR ERVK 652 849 -1993 6 1451 498 167 36 89 chr4 113571705 113571817 -42058303 + RMER3D-int LTR ERVK 478 583 -2259 6 1451 1356 222 115 24 chr4 113571848 113572317 -42057803 + RMER3D-int LTR ERVK 1014 1525 -1317 6 1451 373 246 50 36 chr4 113572358 113572497 -42057623 + RMER3D-int LTR ERVK 1539 1679 -1163 6 1451 2108 274 28 43 chr4 113572498 113573443 -42056677 + RMER3D-int LTR ERVK 1907 2836 -6 6 1451 639 155 35 0 chr4 113573448 113573564 -42056556 + BGLII LTR ERVK 1 120 -302 6 1451 371 168 74 0 chr4 113573564 113573659 -42056461 - L1Md_A LINE L1 -3 6579 6478 6 1451 251 341 129 27 chr4 113573659 113573760 -42056360 + BGLII LTR ERVK 131 245 -200 6 1451 558 0 0 0 chr4 113573760 113573822 -42056298 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1451 1500 168 13 27 chr4 113573822 113574103 -42056017 + BGLII LTR ERVK 141 421 0 6 1451 3810 319 38 39 chr4 113574242 113575024 -42055096 - MurERV4-int LTR ERVK -2029 3231 2435 6 1451 972 64 42 28 chr4 113575024 113575168 -42054952 + B1_Mus2 SINE Alu 2 147 0 6 1451 3810 319 38 39 chr4 113575168 113575280 -42054840 - MurERV4-int LTR ERVK -2826 2434 2333 6 1451 489 34 0 0 chr4 113575280 113575339 -42054781 + (TTA)n Simple_repeat Simple_repeat 2 60 0 6 1451 3810 319 38 39 chr4 113575339 113576720 -42053400 - MurERV4-int LTR ERVK -2928 2332 957 6 1451 303 314 64 32 chr4 113576993 113577118 -42053002 - RMER15-int LTR ERVL -3792 1207 1079 6 1451 26545 121 38 27 chr4 113577641 113582010 -42048110 - L1_Mus1 LINE L1 -1 6566 2050 7 1451 414 212 36 11 chr4 113582010 113582139 -42047981 + ORR1A1 LTR MaLR 200 346 0 7 1451 26545 121 38 27 chr4 113582139 113582957 -42047163 - L1_Mus1 LINE L1 -1 2049 1203 7 1451 4222 204 62 52 chr4 113582927 113583972 -42046148 - L1Md_F LINE L1 -5384 1135 80 7 1451 237 354 46 8 chr4 113584172 113584303 -42045817 - RMER15 LTR ERVL -58 517 382 6 1451 527 265 0 43 chr4 113584835 113585044 -42045076 + RMER3D-int LTR ERVK 652 851 -1991 7 1451 358 240 40 0 chr4 113585156 113585256 -42044864 + RMER3D-int LTR ERVK 494 597 -2245 7 1451 1531 206 46 95 chr4 113585369 113585629 -42044491 + RMER3D-int LTR ERVK 1160 1420 -1422 7 1451 492 48 0 0 chr4 113585629 113585692 -42044428 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1451 1531 206 46 95 chr4 113585692 113585978 -42044142 + RMER3D-int LTR ERVK 1421 1679 -1163 7 1451 2298 248 38 48 chr4 113585996 113586916 -42043204 + RMER3D-int LTR ERVK 1924 2834 -8 7 1451 1955 190 37 17 chr4 113586929 113587337 -42042783 + BGLII LTR ERVK 6 421 0 7 1451 4488 315 25 27 chr4 113587476 113589754 -42040366 - MurERV4-int LTR ERVK -2030 3230 956 7 1451 360 275 65 32 chr4 113590135 113590259 -42039861 - RMER15-int LTR ERVL -3793 1206 1079 6 1451 274 395 26 40 chr4 113590918 113591190 -42038930 - RMER15-int LTR ERVL -4638 361 94 6 1451 282 321 44 37 chr4 113591270 113591406 -42038714 - RMER15 LTR ERVL -60 515 379 6 1451 1361 181 31 0 chr4 113592044 113592337 -42037783 + BGLII LTR ERVK 120 421 0 7 1451 465 265 0 57 chr4 113592710 113592922 -42037198 + RMER3D-int LTR ERVK 652 851 -1991 7 1451 363 197 13 0 chr4 113593034 113593110 -42037010 + RMER3D-int LTR ERVK 494 570 -2272 7 1451 351 252 0 57 chr4 113593136 113593258 -42036862 + RMER3D-int LTR ERVK 1419 1533 -1309 7 1451 540 215 40 34 chr4 113593281 113593430 -42036690 + RMER3D-int LTR ERVK 1530 1679 -1163 7 1451 2101 245 46 58 chr4 113593448 113594317 -42035803 + RMER3D-int LTR ERVK 1924 2782 -60 7 1451 1493 194 25 25 chr4 113594317 113594639 -42035481 + BGLII LTR ERVK 100 421 0 8 1451 866 250 73 42 chr4 113594778 113595162 -42034958 - MurERV4-int LTR ERVK -2029 3231 2836 8 1451 3634 318 27 25 chr4 113595188 113596947 -42033173 - MurERV4-int LTR ERVK -2542 2718 956 8 1451 435 369 80 28 chr4 113597028 113597452 -42032668 - RMER15-int LTR ERVL -3475 1524 1079 6 1451 2938 156 33 26 chr4 113598060 113598599 -42031521 + RLTR13D1 LTR ERVK 1 543 -359 8 1451 3579 85 13 19 chr4 113598572 113598867 -42031253 + RLTR13D1 LTR ERVK 227 520 -286 8 1451 1491 102 13 9 chr4 113598867 113599094 -42031026 - L1Md_F2 LINE L1 0 6582 6355 8 1451 3579 114 30 24 chr4 113599094 113599374 -42030746 + RLTR13D1 LTR ERVK 511 803 0 8 1451 495 0 0 0 chr4 113599829 113599884 -42030236 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1451 961 79 50 0 chr4 113600405 113600544 -42029576 - B1_Mus1 SINE Alu -1 147 2 8 1451 616 228 5 48 chr4 113600563 113600770 -42029350 + RMER3D-int LTR ERVK 652 849 -1993 8 1451 454 149 0 0 chr4 113600908 113600995 -42029125 + RMER3D-int LTR ERVK 489 564 -2278 8 1451 1751 206 99 73 chr4 113601030 113601618 -42028502 + RMER3D-int LTR ERVK 1014 1616 -1226 8 1451 1964 273 37 47 chr4 113601678 113602617 -42027503 + RMER3D-int LTR ERVK 1907 2836 -6 8 1451 2235 154 14 30 chr4 113602622 113603050 -42027070 + BGLII LTR ERVK 1 421 0 8 1451 2627 304 51 22 chr4 113603189 113605404 -42024716 - MurERV4-int LTR ERVK -2029 3231 953 8 1451 3483 15 2 0 chr4 113605533 113605928 -42024192 + MTA_Mm LTR MaLR 1 396 0 9 1451 8926 38 6 1 chr4 113605928 113607021 -42023099 + MTA_Mm-int LTR MaLR 1 1098 0 9 1451 3494 15 2 0 chr4 113607021 113607416 -42022704 + MTA_Mm LTR MaLR 1 396 0 9 1451 361 281 64 32 chr4 113607658 113607783 -42022337 - RMER15-int LTR ERVL -3792 1207 1079 9 1451 3335 256 33 6 chr4 113608337 113609221 -42020899 - MurERV4-int LTR ERVK -1993 3267 2360 9 1451 426 294 83 25 chr4 113609778 113609935 -42020185 - RMER15 LTR ERVL -58 517 352 9 1451 324 0 0 0 chr4 113611247 113611283 -42018837 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 1451 275 235 24 12 chr4 113611339 113611421 -42018699 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 1451 279 344 202 6 chr4 113612341 113612657 -42017463 - L2 LINE L2 -765 2654 2277 9 1451 862 306 138 23 chr4 113612703 113613057 -42017063 + MTD LTR MaLR 11 405 -14 9 1451 1274 24 11 61 chr4 113616228 113616408 -42013712 + L1Md_F3 LINE L1 6412 6582 -2 9 1451 742 307 43 19 chr4 113616532 113616907 -42013213 + L1MC LINE L1 5388 5771 -573 9 1451 1204 261 53 3 chr4 113616993 113617293 -42012827 + Lx7 LINE L1 6594 6908 -788 9 1451 690 298 29 54 chr4 113617296 113617647 -42012473 + RLTR15 LTR ERVK 1 342 -17 9 1451 1807 152 156 12 chr4 113617760 113618343 -42011777 + Lx3_Mus LINE L1 6335 7001 -8 1 1451 302 283 8 38 chr4 113618527 113618659 -42011461 + Lx2B LINE L1 6869 6996 -4 1 1451 862 229 0 10 chr4 113619641 113619844 -42010276 - Lx2 LINE L1 -7 6990 6790 1 1451 544 322 76 61 chr4 113620219 113620861 -42009259 + MYSERV6-int LTR ERVK 4325 4976 -1574 1 1451 442 279 11 4 chr4 113621062 113621215 -42008905 + L1_Mus2 LINE L1 551 806 -5813 1 1451 863 233 55 0 chr4 113621212 113621431 -42008689 + L1_Mus2 LINE L1 728 958 -5661 1 1451 2434 102 0 3 chr4 113621429 113621763 -42008357 - L1_Mus1 LINE L1 -252 6315 5983 1 1451 775 91 40 40 chr4 113621762 113621888 -42008232 + L1_Mus1 LINE L1 6327 6452 -115 1 1451 24749 131 12 1 chr4 113621891 113624247 -42005873 + L1_Mus2 LINE L1 1826 4198 -1688 1 1451 336 48 0 0 chr4 113624247 113624289 -42005831 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1451 678 13 0 0 chr4 113624289 113624367 -42005753 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1451 24749 121 9 2 chr4 113624367 113626709 -42003411 + L1_Mus2 LINE L1 4199 6568 -1 1 1451 229 239 0 0 chr4 113626766 113626812 -42003308 + A-rich Low_complexity Low_complexity 1 46 0 1 1451 2369 247 51 52 chr4 113626815 113627914 -42002206 + MYSERV6-int LTR ERVK 7832 8557 -402 1 1451 3995 157 50 13 chr4 113627935 113628716 -42001404 + RLTR22_Mur LTR ERVK 4 813 -1035 1 1451 963 131 14 0 chr4 113628810 113628955 -42001165 + B1_Mm SINE Alu 1 147 0 1 1451 3006 197 3 9 chr4 113629088 113629763 -42000357 + Lx3C LINE L1 3190 3860 -2026 1 1451 1091 75 0 14 chr4 113629766 113629914 -42000206 + B1_Mus1 SINE Alu 3 148 0 1 1451 390 42 0 0 chr4 113629914 113629962 -42000158 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1451 4018 131 8 72 chr4 113629971 113630788 -41999332 + RMER17A LTR ERVK 1 751 0 1 1451 2295 189 13 11 chr4 113630789 113631314 -41998806 + Lx3C LINE L1 3866 4391 -1495 1 1451 5922 200 33 53 chr4 113631315 113633260 -41996860 + Lx3C LINE L1 5071 6965 -11 1 1451 369 0 0 0 chr4 113633260 113633301 -41996819 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1451 396 59 0 0 chr4 113633307 113633358 -41996762 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1451 323 293 0 0 chr4 113633413 113633488 -41996632 + Lx8 LINE L1 5831 5905 -1568 1 1451 1420 275 13 40 chr4 113633712 113634110 -41996010 + Lx6 LINE L1 7048 7434 -26 1 1451 25 0 0 0 chr4 113634110 113634135 -41995985 + AT_rich Low_complexity Low_complexity 1 25 0 1 1451 2046 228 68 18 chr4 113634265 113634952 -41995168 + L1_Mur3 LINE L1 1320 2041 -3839 1 1451 240 186 0 0 chr4 113635005 113635064 -41995056 + (CCA)n Simple_repeat Simple_repeat 1 59 0 1 1451 299 236 93 16 chr4 113635141 113635270 -41994850 + L1_Mur2 LINE L1 213 351 -6361 1 1451 1598 203 46 0 chr4 113635260 113635630 -41994490 - L1_Mur2 LINE L1 -5793 919 533 1 1451 402 235 79 94 chr4 113635633 113635760 -41994360 - B1_Mus2 SINE Alu -19 128 4 1 1451 556 313 69 72 chr4 113635760 113636014 -41994106 - MT2B LTR ERVL -339 262 10 1 1451 1290 195 22 19 chr4 113636042 113636309 -41993811 - ORR1B1-int LTR MaLR -1323 640 373 1 181 32862 81 3 16 chr4 113636310 113641611 -41988509 + L1Md_F2 LINE L1 353 5586 -297 1 1452 8106 46 1 0 chr4 113641612 113642594 -41987526 + L1Md_F2 LINE L1 5588 6570 -12 1 1452 1607 223 33 0 chr4 113642596 113642629 -41987491 - ORR1B1-int LTR MaLR -1577 386 349 1 1452 432 0 0 0 chr4 113642629 113642677 -41987443 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 1452 1607 223 33 0 chr4 113642677 113643011 -41987109 - ORR1B1-int LTR MaLR -1615 348 8 1 1452 1650 207 27 147 chr4 113643011 113643459 -41986661 - ORR1B1 LTR MaLR 0 394 1 1 1452 246 211 71 27 chr4 113643459 113643571 -41986549 + L1_Mur3 LINE L1 4295 4411 -1469 1 1452 2963 133 0 0 chr4 113643583 113644013 -41986107 + Lx3A LINE L1 6433 6862 -119 1 1452 1064 108 147 15 chr4 113644022 113644122 -41985998 + Lx3A LINE L1 6759 6859 -122 1 1452 483 48 0 0 chr4 113644122 113644184 -41985936 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1452 1064 108 147 15 chr4 113644184 113644280 -41985840 + Lx3A LINE L1 6860 6981 0 1 1452 2519 275 129 19 chr4 113644265 113645440 -41984680 + L1_Mur1 LINE L1 4471 5756 -130 1 1452 5985 56 0 0 chr4 113645438 113646186 -41983934 + L1_Mm LINE L1 5129 5876 -7 1 1452 2631 116 5 10 chr4 113646188 113646597 -41983523 + L1Md_F2 LINE L1 6164 6570 -12 1 1452 816 211 31 40 chr4 113646597 113646819 -41983301 + Lx5 LINE L1 5743 5962 -1088 1 1452 505 204 44 9 chr4 113646809 113646923 -41983197 + Lx5 LINE L1 5845 5962 -1088 1 1452 496 202 48 0 chr4 113646913 113647017 -41983103 + Lx5 LINE L1 5845 5953 -1097 1 1452 629 292 32 5 chr4 113647017 113647234 -41982886 + Lx6 LINE L1 5842 6064 -1396 1 1452 1706 225 96 120 chr4 113647265 113647867 -41982253 + L1_Mus1 LINE L1 280 921 -5717 1 1452 1134 76 0 0 chr4 113647867 113648011 -41982109 + B1_Mm SINE Alu 3 146 -1 1 1452 23781 137 81 15 chr4 113648011 113651542 -41978578 + L1_Mus1 LINE L1 852 4639 -1244 1 1452 235 0 57 0 chr4 113651542 113651577 -41978543 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1452 23781 118 44 7 chr4 113651577 113653513 -41976607 + L1_Mus1 LINE L1 4640 6636 0 1 1452 25211 131 13 14 chr4 113653542 113656459 -41973661 + L1_Mus2 LINE L1 1704 4633 -1250 1 1452 180 0 0 0 chr4 113656459 113656479 -41973641 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 1 1452 25211 119 44 9 chr4 113656479 113658360 -41971760 + L1_Mus2 LINE L1 4634 6565 -1 1 1452 7213 88 5 1 chr4 113658396 113659655 -41970465 + L1_Mus2 LINE L1 5302 6565 -1 1 1452 9737 146 61 13 chr4 113659664 113662063 -41968057 + L1_Mur1 LINE L1 110 2888 -2998 1 1452 761 171 6 0 chr4 113662063 113662233 -41967887 + GA-rich Low_complexity Low_complexity 1 171 0 1 1452 27214 117 23 14 chr4 113662235 113666944 -41963176 + Lx7 LINE L1 371 5128 -755 1 1452 513 0 0 0 chr4 113666944 113667001 -41963119 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1452 6499 179 29 46 chr4 113667001 113667544 -41962576 + Lx7 LINE L1 5129 5663 -2033 1 1452 325 294 0 12 chr4 113667623 113667709 -41962411 + Lx7 LINE L1 6193 6277 -1419 1 1452 23 54 0 0 chr4 113668818 113668855 -41961265 + AT_rich Low_complexity Low_complexity 1 37 0 1 1452 26 50 0 0 chr4 113669070 113669110 -41961010 + AT_rich Low_complexity Low_complexity 1 40 0 1 1452 471 301 7 75 chr4 113669147 113669177 -41960943 - B3 SINE B2 -7 209 189 1 1452 552 68 0 0 chr4 113669177 113669250 -41960870 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1452 471 301 7 75 chr4 113669250 113669366 -41960754 - B3 SINE B2 -28 188 73 1 1452 379 353 69 66 chr4 113669451 113669830 -41960290 - Lx8 LINE L1 -11 7462 7083 1 1452 423 254 70 54 chr4 113670030 113670159 -41959961 - B1_Mur3 SINE Alu -1 148 18 1 1452 296 233 70 104 chr4 113670060 113670175 -41959945 - MT2B LTR ERVL -325 276 166 1 1452 200 238 12 0 chr4 113670455 113670539 -41959581 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1452 525 104 0 0 chr4 113670671 113670748 -41959372 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1452 318 331 57 25 chr4 113670831 113670989 -41959131 - Lx9 LINE L1 -267 7377 7215 1 1452 186 43 0 0 chr4 113671143 113671166 -41958954 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1452 2461 82 0 3 chr4 113671193 113671617 -41958503 + L1_Mus1 LINE L1 6240 6567 0 1 1452 251 297 8 9 chr4 113672894 113673010 -41957110 + L1_Mur3 LINE L1 5534 5687 -604 1 1452 5382 233 76 36 chr4 113673084 113673687 -41956433 - Lx5 LINE L1 -1 7049 6433 1 1452 639 129 191 16 chr4 113673687 113673813 -41956307 + B1_Mus1 SINE Alu 1 148 0 1 1452 5382 233 76 36 chr4 113673813 113674243 -41955877 - Lx5 LINE L1 -618 6432 5955 1 1452 444 19 0 0 chr4 113674243 113674296 -41955824 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1452 279 71 0 0 chr4 113674297 113674339 -41955781 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1452 5382 223 22 64 chr4 113674339 113675615 -41954505 - Lx5 LINE L1 -1096 5954 4741 1 1452 22 0 0 0 chr4 113675723 113675745 -41954375 + AT_rich Low_complexity Low_complexity 1 22 0 1 1452 399 130 0 0 chr4 113675870 113675947 -41954173 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1452 922 151 14 0 chr4 113677073 113677219 -41952901 + B1_Mus1 SINE Alu 1 148 0 1 1452 23 33 0 0 chr4 113677301 113677331 -41952789 + AT_rich Low_complexity Low_complexity 1 30 0 1 1452 258 422 28 28 chr4 113677633 113677955 -41952165 - Lx8 LINE L1 -229 7244 6923 1 1452 35 41 0 0 chr4 113678129 113678178 -41951942 + AT_rich Low_complexity Low_complexity 1 49 0 1 1452 422 370 7 0 chr4 113678992 113679130 -41950990 - B3 SINE B2 -71 145 7 1 1452 306 346 78 37 chr4 113679493 113679736 -41950384 + MLT1E2 LTR MaLR 24 276 -351 1 1452 198 0 0 0 chr4 113679932 113679954 -41950166 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1452 285 307 92 18 chr4 113680104 113680333 -41949787 + L1M4c LINE L1 1251 1496 -4807 1 1452 369 358 18 24 chr4 113680521 113680687 -41949433 + L1M4c LINE L1 1291 1455 -4929 1 1452 590 301 7 7 chr4 113680955 113681099 -41949021 + B1_Mus1 SINE Alu 3 146 -2 1 1452 243 152 0 0 chr4 113681111 113681157 -41948963 + (TGG)n Simple_repeat Simple_repeat 1 46 0 1 1452 208 214 18 18 chr4 113681158 113681215 -41948905 + (ATG)n Simple_repeat Simple_repeat 1 57 0 1 1452 3571 185 10 21 chr4 113681823 113682552 -41947568 + RLTR22_Mur LTR ERVK 3 723 -1125 1 1452 2557 152 4 8 chr4 113682558 113683030 -41947090 + L1_Mm LINE L1 3483 3952 -1931 1 1452 3277 43 5 0 chr4 113683030 113683424 -41946696 + MTA_Mm LTR MaLR 1 396 0 1 1452 7340 66 10 1 chr4 113683425 113684420 -41945700 + MTA_Mm-int LTR MaLR 2 1005 -93 1 1452 34620 79 4 2 chr4 113684431 113690542 -41939578 + L1Md_F3 LINE L1 446 6528 -56 1 1452 4496 120 10 1 chr4 113690542 113691252 -41938868 + L1_Mus3 LINE L1 5917 6632 -6 1 1452 1682 152 17 119 chr4 113691252 113691671 -41938449 + RLTR22_Mur LTR ERVK 734 1109 -739 1 1452 1283 64 6 0 chr4 113691671 113691842 -41938278 - Lx3_Mus LINE L1 -1157 5852 5681 1 1452 1599 193 23 0 chr4 113691843 113692148 -41937972 + Lx3A LINE L1 6664 6975 -6 1 1452 24 0 0 0 chr4 113692148 113692172 -41937948 + AT_rich Low_complexity Low_complexity 1 24 0 1 1452 273 109 86 11 chr4 113692227 113692320 -41937800 + A-rich Low_complexity Low_complexity 3 102 0 1 1452 3274 191 61 10 chr4 113692323 113692526 -41937594 + RLTR22_Mur LTR ERVK 1125 1347 -501 1 1452 591 40 0 0 chr4 113692526 113692600 -41937520 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1452 3274 191 61 10 chr4 113692600 113693085 -41937035 + RLTR22_Mur LTR ERVK 1348 1847 -1 1 1452 5086 214 32 25 chr4 113693119 113694252 -41935868 + L1_Mur3 LINE L1 925 2051 -3826 1 1452 614 13 0 13 chr4 113694252 113694328 -41935792 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1452 5086 220 104 16 chr4 113694328 113695095 -41935025 + L1_Mur3 LINE L1 2052 3071 -2815 1 1452 701 313 56 5 chr4 113695152 113695348 -41934772 - B3 SINE B2 -5 211 6 1 1452 455 145 12 0 chr4 113695394 113695477 -41934643 + CT-rich Low_complexity Low_complexity 1 84 0 1 1452 263 260 0 0 chr4 113695603 113695676 -41934444 + MusHAL1 LINE L1 1829 1901 -811 1 1452 586 279 116 113 chr4 113695682 113696017 -41934103 + RMER4B LTR ERVK 99 434 -151 1 1452 660 251 40 7 chr4 113696109 113696382 -41933738 + L1_Mur3 LINE L1 3198 3479 -2401 1 1452 291 137 0 0 chr4 113696383 113696434 -41933686 + L1_Mur2 LINE L1 3972 4022 -1855 1 1452 2736 201 11 11 chr4 113696445 113697058 -41933062 + L1_Mur3 LINE L1 3907 4519 -1358 1 1452 922 249 9 36 chr4 113697593 113697814 -41932306 - B3 SINE B2 -1 215 1 1 1452 658 325 64 45 chr4 113698013 113698277 -41931843 + B4A SINE B4 1 269 -23 1 1452 510 83 0 0 chr4 113698342 113698414 -41931706 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1452 33 43 0 0 chr4 113698872 113698919 -41931201 + AT_rich Low_complexity Low_complexity 1 47 0 1 1452 564 323 101 16 chr4 113699286 113699594 -41930526 - Lx8 LINE L1 -61 7412 7079 1 1452 7463 172 31 13 chr4 113699775 113701453 -41928667 - Lx2 LINE L1 -1 6996 5287 2 1452 12591 118 15 7 chr4 113701473 113703193 -41926927 - Lx3_Mus LINE L1 -4 7005 5271 2 1452 273 57 0 0 chr4 113703193 113703228 -41926892 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1452 12591 119 7 7 chr4 113703228 113704551 -41925569 - Lx3_Mus LINE L1 -616 5270 3952 2 1452 3386 213 64 3 chr4 113704554 113705241 -41924879 + RMER13B LTR ERVK 180 908 0 2 1452 2062 167 12 7 chr4 113705241 113705645 -41924475 - MusHAL1 LINE L1 -1363 1349 944 2 1452 34012 131 24 7 chr4 113705653 113714278 -41915842 - L1Md_F3 LINE L1 -16 6568 1 2 1452 1296 164 3 35 chr4 113714284 113714600 -41915520 - MusHAL1 LINE L1 -1760 952 647 2 1452 2642 48 119 0 chr4 113714600 113714953 -41915167 + MTA_Mm LTR MaLR 1 395 -1 2 1452 3161 75 0 5 chr4 113714954 113715385 -41914735 + MTA_Mm-int LTR MaLR 1 429 -669 2 1452 2792 24 3 0 chr4 113715359 113715695 -41914425 + MTA_Mm LTR MaLR 60 396 0 2 1452 3685 122 10 2 chr4 113715697 113716322 -41913798 - MusHAL1 LINE L1 -2063 649 20 2 1452 252 291 0 0 chr4 113716839 113716925 -41913195 - L1ME2z LINE L1 -88 6356 6271 2 1452 5772 106 29 12 chr4 113717030 113717916 -41912204 - RLTR13D6 LTR ERVK -1 901 1 2 1452 23 0 0 0 chr4 113718055 113718078 -41912042 + AT_rich Low_complexity Low_complexity 1 23 0 2 1452 225 415 44 0 chr4 113718765 113718900 -41911220 - LTR16A LTR ERVL -306 145 5 2 1452 621 100 0 0 chr4 113719887 113719977 -41910143 + (TC)n Simple_repeat Simple_repeat 2 91 0 2 1452 1116 169 47 4 chr4 113720357 113720589 -41909531 + Lx2 LINE L1 6755 6996 -1 2 1452 570 316 11 50 chr4 113720602 113720879 -41909241 + Lx6 LINE L1 5908 6173 -1287 2 1452 1045 83 0 34 chr4 113721013 113721162 -41908958 - B1_Mus1 SINE Alu -2 146 3 2 1452 584 228 54 27 chr4 113721395 113721544 -41908576 - RMER21B LTR ERV1 -333 509 357 2 1452 256 139 0 0 chr4 113721661 113721697 -41908423 + Lx6 LINE L1 6209 6244 -1216 2 1452 884 290 140 37 chr4 113721701 113722102 -41908018 - RLTR22_Mur LTR ERVK 0 1848 1407 2 1452 6625 139 27 2 chr4 113722115 113723995 -41906125 - L1_Mus3 LINE L1 -7 6631 4706 2 1452 2129 152 43 80 chr4 113724000 113724203 -41905917 - LTRIS4 LTR ERV1 0 512 307 2 1452 270 0 0 0 chr4 113724203 113724233 -41905887 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1452 1054 91 7 0 chr4 113724233 113724376 -41905744 + B1_Mus2 SINE Alu 4 147 0 2 1452 207 0 0 0 chr4 113724386 113724409 -41905711 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1452 2129 145 60 74 chr4 113724409 113724702 -41905418 - LTRIS4 LTR ERV1 -201 306 2 2 1452 3027 151 10 0 chr4 113724702 113725218 -41904902 - L1_Mus3 LINE L1 -1179 4704 4184 2 1452 821 268 40 111 chr4 113725221 113725616 -41904504 - RLTR22_Mus LTR ERVK -451 1357 991 2 1452 1361 205 50 37 chr4 113725796 113726095 -41904025 + ETnERV2-int LTR ERVK 175 477 -6929 2 1452 4647 142 42 63 chr4 113726148 113727144 -41902976 + RLTR45-int LTR ERVK 2077 3051 -4193 2 1452 1652 123 4 4 chr4 113727144 113727405 -41902715 + L1_Mus1 LINE L1 2663 2923 -2960 2 1452 30791 87 4 2 chr4 113727406 113732676 -41897444 + L1Md_F2 LINE L1 311 5586 -297 2 1452 7758 51 8 3 chr4 113732677 113733656 -41896464 + L1Md_F2 LINE L1 5588 6571 -11 2 1452 16884 133 10 70 chr4 113733656 113735941 -41894179 + L1_Mus1 LINE L1 2918 5218 -665 2 1452 579 66 0 0 chr4 113735941 113736017 -41894103 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2 1452 16884 103 4 28 chr4 113736017 113737574 -41892546 + L1_Mus1 LINE L1 5219 6567 0 2 1452 4611 152 72 8 chr4 113737679 113739072 -41891048 - L1_Mur1 LINE L1 -3896 1990 148 2 1452 2371 111 3 6 chr4 113739074 113739419 -41890701 - MTA_Mm LTR MaLR -43 353 10 2 1452 573 202 44 44 chr4 113739421 113739575 -41890545 - Lx2B LINE L1 -530 6446 6290 2 1452 22 35 0 0 chr4 113740316 113740345 -41889775 + AT_rich Low_complexity Low_complexity 1 29 0 2 1452 1267 283 30 0 chr4 113740346 113740650 -41889470 + Lx5 LINE L1 6697 7009 -41 2 1452 29006 90 8 11 chr4 113740908 113745655 -41884465 + L1Md_A LINE L1 576 5305 -578 2 1452 36760 34 2 8 chr4 113745643 113750854 -41879266 + L1Md_T LINE L1 410 5586 -297 2 1452 7849 51 3 0 chr4 113750854 113751834 -41878286 + L1Md_T LINE L1 5587 6569 -13 2 1452 2543 209 60 2 chr4 113752008 113752555 -41877565 + Lx2 LINE L1 6012 6590 -407 2 1452 41 48 0 0 chr4 113752884 113752946 -41877174 + AT_rich Low_complexity Low_complexity 1 62 0 2 1452 13053 142 21 14 chr4 113753010 113755942 -41874178 + L1VL4 LINE L1 193 3142 -417 2 1452 5426 186 6 10 chr4 113755946 113757068 -41873052 + L1_Mur2 LINE L1 4246 5363 -514 2 1452 1540 157 25 18 chr4 113757068 113757354 -41872766 + Lx LINE L1 6361 6648 -6 2 1452 21 36 0 0 chr4 113757431 113757459 -41872661 + AT_rich Low_complexity Low_complexity 1 28 0 2 1452 3310 205 47 27 chr4 113757692 113758071 -41872049 + RMER6A LTR ERVK 1 401 -355 2 1452 2586 124 10 2 chr4 113758071 113758468 -41871652 - MTB LTR MaLR 0 400 1 2 1452 3310 205 47 27 chr4 113758468 113758829 -41871291 + RMER6A LTR ERVK 402 756 0 2 1452 482 88 154 0 chr4 113758920 113759011 -41871109 + L1_Mus3 LINE L1 6532 6636 -2 2 1452 1441 283 65 43 chr4 113759438 113759947 -41870173 + RMER19C LTR ERVK 92 611 0 2 1452 579 286 50 0 chr4 113760059 113760258 -41869862 + B3 SINE B2 2 210 -6 2 1452 22 0 0 0 chr4 113760265 113760287 -41869833 + AT_rich Low_complexity Low_complexity 1 22 0 2 1452 28 29 0 0 chr4 113760482 113760517 -41869603 + AT_rich Low_complexity Low_complexity 1 35 0 2 1452 461 337 41 13 chr4 113760893 113761209 -41868911 - L1_Rod LINE L1 -1 5846 5522 2 1452 4841 41 2 0 chr4 113761277 113761857 -41868263 - L1Md_T LINE L1 0 6582 6002 2 1452 21 36 0 0 chr4 113761920 113761948 -41868172 + AT_rich Low_complexity Low_complexity 1 28 0 2 1452 414 0 0 0 chr4 113762172 113762218 -41867902 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 2 1452 182 98 19 56 chr4 113762450 113762504 -41867616 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 2 1452 342 115 0 0 chr4 113762565 113762617 -41867503 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1452 454 169 36 0 chr4 113762886 113762969 -41867151 + RMER17C LTR ERVK 1 86 -324 2 1452 5646 115 11 32 chr4 113762969 113764449 -41865671 + L1VL1 LINE L1 196 1639 -2059 2 1452 3470 155 43 19 chr4 113764449 113764858 -41865262 + Lx2A1 LINE L1 6348 6771 -237 2 1452 3245 43 5 0 chr4 113764858 113765250 -41864870 - MTA_Mm LTR MaLR 0 396 3 2 1452 8389 58 23 0 chr4 113765252 113766325 -41863795 - MTA_Mm-int LTR MaLR 0 1098 1 2 1452 3233 41 10 0 chr4 113766325 113766717 -41863403 - MTA_Mm LTR MaLR 0 396 1 2 1452 3470 155 43 19 chr4 113766717 113766946 -41863174 + Lx2A1 LINE L1 6772 7005 -3 2 1452 740 236 99 61 chr4 113767122 113767384 -41862736 + RLTR10A LTR ERVK 140 411 0 2 1452 419 193 61 52 chr4 113767403 113767518 -41862602 + RLTR10-int LTR ERVK 318 433 -1554 2 1452 252 242 54 11 chr4 113767640 113767732 -41862388 + MMERVK10C-int LTR ERVK 57 152 -6390 2 1452 394 253 46 46 chr4 113767942 113768095 -41862025 + MMERVK10C-int LTR ERVK 2241 2393 -4149 2 1452 572 305 22 19 chr4 113768141 113768567 -41861553 + MMERVK10C-int LTR ERVK 3511 3896 -2585 2 1453 388 267 24 115 chr4 113770526 113770691 -41859429 + B1_Mur4 SINE Alu 1 150 0 2 1453 444 321 21 78 chr4 113770692 113770935 -41859185 + Lx9 LINE L1 6888 7116 -528 2 1453 371 236 227 27 chr4 113770978 113771162 -41858958 - RMER4B LTR ERVK -24 561 341 2 1453 666 266 50 56 chr4 113771341 113771664 -41858456 + RLTR15 LTR ERVK 3 323 -36 2 1453 729 168 156 5 chr4 113771719 113771905 -41858215 - RMER4B LTR ERVK -371 214 1 2 1453 658 342 25 15 chr4 113771910 113772234 -41857886 + Lx9 LINE L1 7130 7456 -188 2 1453 261 119 0 0 chr4 113772234 113772276 -41857844 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1453 466 372 44 39 chr4 113772276 113772342 -41857778 + Lx8 LINE L1 7328 7390 -83 2 1453 270 0 0 0 chr4 113772438 113772468 -41857652 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1453 207 100 0 0 chr4 113772543 113772573 -41857547 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1453 396 0 0 0 chr4 113772828 113772872 -41857248 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1453 11210 213 29 30 chr4 113772945 113776411 -41853709 + L1VL4 LINE L1 568 4033 -1853 2 1453 556 186 0 0 chr4 113776411 113776524 -41853596 + Lx2 LINE L1 6882 6994 -3 2 1453 7769 139 32 20 chr4 113776542 113777354 -41852766 + L1VL4 LINE L1 756 1570 -1989 2 1453 2783 133 15 25 chr4 113777354 113777761 -41852359 - RLTR9D LTR ERVK 0 403 1 2 1453 12606 202 28 109 chr4 113777761 113779510 -41850610 + L1_Mur1 LINE L1 1925 3689 -2197 2 1453 1674 147 15 55 chr4 113779510 113779835 -41850285 + RLTRETN_Mm LTR ERVK 11 322 0 2 1453 12606 202 28 109 chr4 113779835 113780198 -41849922 + L1_Mur1 LINE L1 3690 4057 -1829 2 1453 3689 135 11 28 chr4 113780198 113780771 -41849349 + L1_Mus4 LINE L1 6073 6635 -1 2 1453 12606 202 28 109 chr4 113780771 113781427 -41848693 + L1_Mur1 LINE L1 4058 4711 -1175 2 1453 18184 177 22 7 chr4 113781422 113785109 -41845011 - L1VL2 LINE L1 -1057 4829 1084 2 1453 228 180 20 0 chr4 113785109 113785159 -41844961 + T-rich Low_complexity Low_complexity 5 55 0 2 1453 7186 129 8 6 chr4 113785186 113785988 -41844132 - Lx LINE L1 0 6654 5849 2 1453 3748 18 0 0 chr4 113785988 113786384 -41843736 + MTA_Mm LTR MaLR 1 396 0 2 1453 7186 172 3 14 chr4 113786384 113787198 -41842922 - Lx LINE L1 -35 5848 5043 2 1453 1759 159 6 41 chr4 113787203 113787543 -41842577 + L1_Mur2 LINE L1 3756 4083 -1794 2 1453 5567 48 6 3 chr4 113787545 113788192 -41841928 + L1Md_F2 LINE L1 5932 6580 -2 2 1453 318 306 8 24 chr4 113790825 113790952 -41839168 + RNERVK23-int LTR ERVK 1704 1828 -4339 2 1453 290 351 41 45 chr4 113790995 113791263 -41838857 + RNERVK23-int LTR ERVK 2298 2564 -5653 2 1453 1714 310 82 52 chr4 113791392 113793096 -41837024 + RNERVK23-int LTR ERVK 2697 4451 -3766 2 1453 1717 320 54 45 chr4 113793181 113794311 -41835809 + RNERVK23-int LTR ERVK 4650 5789 -2428 2 1453 441 323 0 0 chr4 113795623 113795756 -41834364 + RNERVK23-int LTR ERVK 6477 6609 -310 2 1453 425 266 49 25 chr4 113795849 113796011 -41834109 + ETnERV2-int LTR ERVK 6359 6524 -720 2 1453 500 311 8 0 chr4 113796062 113796194 -41833926 + ETnERV2-int LTR ERVK 6496 6628 -778 2 1453 3979 173 10 93 chr4 113797076 113797768 -41832352 + L1_Mur2 LINE L1 4079 4738 -1139 2 1453 2889 62 3 6 chr4 113797768 113798111 -41832009 - ORR1A0 LTR MaLR -4 342 1 2 1453 3979 173 10 93 chr4 113798111 113798167 -41831953 + L1_Mur2 LINE L1 4739 4789 -1088 2 1453 1189 88 0 7 chr4 113798167 113798316 -41831804 + B1_Mus1 SINE Alu 1 148 0 2 1453 3979 173 10 93 chr4 113798316 113798491 -41831629 + L1_Mur2 LINE L1 4790 4926 -951 2 1453 594 0 0 0 chr4 113799349 113799415 -41830705 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 2 1453 324 0 0 0 chr4 113799615 113799651 -41830469 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1453 324 234 0 161 chr4 113800323 113800435 -41829685 + L1VL4 LINE L1 212 305 -5997 2 1453 3477 121 24 45 chr4 113800519 113801093 -41829027 + RMER2 LTR ERV1 1 562 -5 2 1453 366 330 111 28 chr4 113802269 113802628 -41827492 + RLTR6-int LTR ERV1 1567 1955 -5823 2 1453 21 0 0 0 chr4 113802761 113802782 -41827338 + AT_rich Low_complexity Low_complexity 1 21 0 2 1453 1155 175 23 56 chr4 113802934 113803200 -41826920 - RLTR13D1 LTR ERVK 0 806 550 2 1453 711 44 0 0 chr4 113803467 113803558 -41826562 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 1453 276 130 0 0 chr4 113803571 113803617 -41826503 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 2 1453 198 254 0 0 chr4 113803610 113803677 -41826443 + CT-rich Low_complexity Low_complexity 3 69 0 2 1453 2507 88 0 76 chr4 113804642 113805024 -41825096 + RLTR10D LTR ERVK 7 359 0 2 1453 1410 241 59 15 chr4 113805083 113805424 -41824696 - RMER13B LTR ERVK 0 908 553 2 1453 1849 127 24 43 chr4 113805853 113806181 -41823939 - IAPLTR2b LTR ERVK -5 322 1 3 1453 7312 112 15 20 chr4 113806181 113807360 -41822760 - IAPEz-int LTR ERVK -351 7329 5525 3 1453 37488 100 15 8 chr4 113808030 113813730 -41816390 - IAPEz-int LTR ERVK -1076 5745 1 3 1453 1664 122 58 48 chr4 113813746 113814057 -41816063 - IAPLTR2b LTR ERVK -13 314 1 3 1453 414 0 0 0 chr4 113814395 113814441 -41815679 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 3 1453 874 103 16 0 chr4 113815235 113815361 -41814759 + RMER17C-int LTR ERVK 3111 3238 0 3 1453 291 106 64 0 chr4 113815362 113815402 -41814718 + RMER17C LTR ERVK 2 44 -366 3 1453 1855 119 4 4 chr4 113815402 113815680 -41814440 + RLTR22_Mus LTR ERVK 1 278 -1530 3 1453 458 193 0 35 chr4 113815680 113815818 -41814302 - L1Md_F2 LINE L1 0 6582 6475 3 1453 6297 62 1 1 chr4 113815818 113816599 -41813521 + L1_Mus1 LINE L1 5684 6464 -103 3 1453 3331 92 67 2 chr4 113816599 113817135 -41812985 + RLTR22_Mur LTR ERVK 262 832 -1016 3 1453 891 74 215 0 chr4 113817423 113817544 -41812576 + B1_Mus2 SINE Alu 1 147 0 3 1453 354 146 0 0 chr4 113817545 113817627 -41812493 + (A)n Simple_repeat Simple_repeat 1 82 0 3 1453 801 0 0 0 chr4 113817632 113817721 -41812399 + (GAA)n Simple_repeat Simple_repeat 2 90 0 3 1453 748 242 37 50 chr4 113817787 113817992 -41812128 + RMER17C LTR ERVK 35 393 -565 3 1453 564 53 0 0 chr4 113817992 113818068 -41812052 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 1453 748 256 24 61 chr4 113818068 113818252 -41811868 + RMER17C LTR ERVK 225 410 0 3 1453 311 202 13 210 chr4 113818395 113818552 -41811568 - MLT1A1 LTR MaLR -282 126 1 3 1453 566 309 0 76 chr4 113819205 113819415 -41810705 - B3A SINE B2 0 198 5 3 1453 228 67 0 0 chr4 113819467 113819497 -41810623 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 3 1453 378 0 0 0 chr4 113820682 113820724 -41809396 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3 1453 643 221 247 0 chr4 113820746 113820904 -41809216 - B3 SINE B2 -19 197 1 3 1453 251 167 0 94 chr4 113821529 113821582 -41808538 + ORR1A2 LTR MaLR 1 48 -279 3 1453 14788 189 62 13 chr4 113821582 113824820 -41805300 - L1_Mm LINE L1 -468 5415 2020 3 1453 574 252 47 16 chr4 113825195 113825324 -41804796 - ETnERV2-int LTR ERVK -204 7202 7070 3 1453 2004 122 31 14 chr4 113825325 113825675 -41804445 - MusHAL1 LINE L1 -1890 822 467 3 1453 367 215 166 20 chr4 113825741 113825849 -41804271 - L1_Mur3 LINE L1 -2385 3755 3617 3 1453 504 298 6 6 chr4 113826011 113826170 -41803950 + L1_Mur3 LINE L1 3731 3889 -1991 3 1453 325 218 0 0 chr4 113826240 113826295 -41803825 - Lx5 LINE L1 -170 6880 6826 3 1453 821 222 23 26 chr4 113826467 113826685 -41803435 + L1Md_F LINE L1 571 788 -5749 3 1453 29326 128 12 6 chr4 113826685 113831723 -41798397 + L1VL4 LINE L1 765 5790 -93 3 1453 206 206 54 11 chr4 113832853 113832978 -41797142 + (TA)n Simple_repeat Simple_repeat 1 130 0 3 1453 279 148 98 26 chr4 113833068 113833221 -41796899 + (TA)n Simple_repeat Simple_repeat 2 165 0 3 1453 252 212 49 49 chr4 113833300 113833444 -41796676 + (CATAT)n Simple_repeat Simple_repeat 2 145 0 3 1453 276 247 22 33 chr4 113833420 113833600 -41796520 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 3 1453 190 151 34 34 chr4 113833647 113833736 -41796384 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 3 1453 198 192 54 7 chr4 113833806 113833953 -41796167 + (TTATA)n Simple_repeat Simple_repeat 5 158 0 3 1453 220 206 57 29 chr4 113833969 113834074 -41796046 + (TTATA)n Simple_repeat Simple_repeat 2 109 0 3 1453 219 117 0 77 chr4 113834104 113834169 -41795951 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 3 1453 276 154 74 34 chr4 113834182 113834330 -41795790 + (TA)n Simple_repeat Simple_repeat 2 155 0 3 1453 26 74 0 0 chr4 113834354 113834408 -41795712 + AT_rich Low_complexity Low_complexity 1 54 0 3 1453 441 340 56 5 chr4 113834410 113834608 -41795512 + MER2 DNA MER2_type 138 345 0 3 1453 244 286 35 12 chr4 113834881 113834966 -41795154 - ORR1E LTR MaLR -4 355 269 3 1453 322 337 14 20 chr4 113835037 113835155 -41794965 - ORR1E LTR MaLR -244 126 7 3 1453 613 316 160 42 chr4 113835144 113835451 -41794669 - MTE-int LTR MaLR -50 1530 1188 3 1453 584 278 124 43 chr4 113835462 113835857 -41794263 + L1MA9 LINE L1 5886 6312 0 3 1453 522 0 0 0 chr4 113836893 113836951 -41793169 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1453 234 0 0 0 chr4 113837663 113837689 -41792431 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1453 202 150 25 0 chr4 113838537 113838577 -41791543 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 1453 225 303 108 36 chr4 113838635 113838830 -41791290 - L1M5 LINE L1 -1516 4630 4422 3 1453 31 82 0 0 chr4 113838833 113838906 -41791214 + AT_rich Low_complexity Low_complexity 1 73 0 3 1453 664 309 41 50 chr4 113838946 113839164 -41790956 - B4A SINE B4 0 292 77 3 1453 723 246 190 15 chr4 113839495 113839763 -41790357 - RMER5 LTR ERV1 0 534 220 3 1453 381 58 0 0 chr4 113839776 113839828 -41790292 + (TTTTA)n Simple_repeat Simple_repeat 5 56 0 3 1453 398 236 82 36 chr4 113839871 113839981 -41790139 - B3A SINE B2 -83 115 1 3 1453 297 275 74 16 chr4 113840000 113840122 -41789998 - RMER5 LTR ERV1 -330 204 76 3 1453 4266 111 40 2 chr4 113840416 113841058 -41789062 - Lx3_Mus LINE L1 -1 7008 6342 3 1453 1825 110 30 12 chr4 113841065 113841458 -41788662 + Lx3_Mus LINE L1 5843 6322 -687 3 1453 5014 50 3 0 chr4 113841472 113842089 -41788031 - L1Md_F2 LINE L1 -12 6570 5952 3 1453 6172 124 18 16 chr4 113842137 113843768 -41786352 - L1VL4 LINE L1 -1729 1830 203 3 1453 4286 121 4 14 chr4 113843761 113844464 -41785656 - L1_Mur1 LINE L1 -462 5424 4729 3 1453 10960 147 10 130 chr4 113844465 113845407 -41784713 - L1_Mur1 LINE L1 -2191 3695 2801 3 1453 342 281 50 66 chr4 113845407 113845605 -41784515 - RLTR46 LTR ERVK 0 320 126 3 1453 10960 147 10 130 chr4 113845605 113847124 -41782996 - L1_Mur1 LINE L1 -2191 2800 1356 3 1453 4380 154 26 34 chr4 113847129 113848011 -41782109 + L1Md_T LINE L1 331 1205 -5411 3 1453 36056 35 1 1 chr4 113848017 113852434 -41777686 + L1Md_T LINE L1 1170 5586 -297 3 1453 8062 48 1 0 chr4 113852434 113853428 -41776692 + L1Md_A LINE L1 5587 6581 -1 3 1453 36056 23 4 1 chr4 113853428 113854610 -41775510 + L1Md_T LINE L1 4405 5591 -292 3 1453 8103 51 0 0 chr4 113854610 113855604 -41774516 + L1Md_T LINE L1 5587 6580 -2 3 1453 1983 129 49 0 chr4 113855629 113856005 -41774115 - L1_Mur1 LINE L1 -4519 1367 974 3 1453 341 268 98 2 chr4 113856012 113856135 -41773985 - L1_Mur1 LINE L1 -6152 832 643 3 1453 1043 116 85 0 chr4 113856178 113856342 -41773778 + B2_Mm1t SINE B2 2 179 -14 3 1453 464 96 327 55 chr4 113856369 113856479 -41773641 + B2_Mm2 SINE B2 46 185 -10 3 1453 712 218 142 11 chr4 113856656 113856846 -41773274 + B3 SINE B2 2 216 0 3 1453 24 0 0 0 chr4 113857115 113857139 -41772981 + AT_rich Low_complexity Low_complexity 1 24 0 3 1453 7125 122 48 3 chr4 113857287 113858416 -41771704 - Lx3A LINE L1 -7 6974 5795 3 1453 198 0 0 0 chr4 113858418 113858440 -41771680 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1453 13962 32 0 0 chr4 113858467 113860785 -41769335 - L1Md_T LINE L1 0 6582 4265 3 1453 3284 139 8 0 chr4 113860795 113861306 -41768814 - L1_Mur1 LINE L1 -96 5790 5276 3 1453 2371 133 17 17 chr4 113861306 113861710 -41768410 + BGLII_Mus LTR ERVK 1 404 -18 3 1453 2068 98 13 7 chr4 113861710 113862017 -41768103 - L1_Mur1 LINE L1 -620 5266 4958 3 1453 280 116 65 39 chr4 113862825 113862978 -41767142 + (TA)n Simple_repeat Simple_repeat 1 157 0 3 1453 863 237 59 74 chr4 113863043 113863449 -41766671 + L1MA9 LINE L1 5904 6303 -9 3 1453 355 209 130 15 chr4 113863722 113863853 -41766267 - L1MA4 LINE L1 -359 5941 5796 3 1453 340 345 116 52 chr4 113864196 113864584 -41765536 - Lx8 LINE L1 -2 7471 7059 3 1453 416 278 101 23 chr4 113864729 113864858 -41765262 + B1_Mus1 SINE Alu 9 147 -1 3 1453 308 211 113 19 chr4 113864884 113864990 -41765130 + Lx9 LINE L1 7507 7622 -22 3 1453 461 268 60 52 chr4 113865051 113865283 -41764837 - Lx9 LINE L1 -40 7604 7371 3 1453 461 333 23 61 chr4 113865396 113865658 -41764462 - Lx9 LINE L1 -445 7199 6948 3 1453 334 338 43 34 chr4 113866223 113866431 -41763689 - L1ME3 LINE L1 0 6162 5953 3 1453 342 278 127 8 chr4 113866823 113866957 -41763163 - L1ME3 LINE L1 -872 5274 5125 3 1453 583 320 29 0 chr4 113867616 113867791 -41762329 + B3A SINE B2 1 180 -18 3 1453 3274 259 18 9 chr4 113868582 113869316 -41760804 - Lx5 LINE L1 -7 7043 6304 3 1453 6238 213 278 75 chr4 113869315 113873036 -41757084 - L1_Mur3 LINE L1 -502 5378 907 3 1453 216 0 0 0 chr4 113873040 113873064 -41757056 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1453 283 106 15 15 chr4 113873160 113873227 -41756893 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 3 1453 1945 170 3 50 chr4 113873594 113873685 -41756435 - RLTR15 LTR ERVK 0 359 275 3 1453 3029 80 5 2 chr4 113873685 113874084 -41756036 - MTB LTR MaLR 0 400 1 3 1453 1945 170 3 50 chr4 113874084 113874369 -41755751 - RLTR15 LTR ERVK -85 274 1 3 1453 3613 242 50 17 chr4 113874372 113875480 -41754640 - MYSERV-int LTR ERVK -3 6547 5404 3 1453 282 145 0 28 chr4 113875495 113875566 -41754554 - MYSERV6-int LTR ERVK -1060 7899 7831 3 1453 27 29 0 0 chr4 113875571 113875605 -41754515 + AT_rich Low_complexity Low_complexity 1 34 0 3 1453 348 299 98 40 chr4 113875690 113875864 -41754256 - RMER4A LTR ERVK -26 440 257 3 1453 556 306 31 31 chr4 113875868 113876097 -41754023 - MYSERV-int LTR ERVK -1428 5122 4894 3 1453 24 0 0 0 chr4 113876190 113876214 -41753906 + AT_rich Low_complexity Low_complexity 1 24 0 3 1453 6710 118 1 0 chr4 113876216 113877193 -41752927 - L1_Mus2 LINE L1 -1 6565 5588 3 1453 484 299 31 58 chr4 113877248 113877472 -41752648 + L1VL1 LINE L1 87 496 -5926 3 1453 236 189 37 19 chr4 113877497 113877551 -41752569 + L1Md_F2 LINE L1 675 729 -5887 3 1453 16824 137 5 13 chr4 113877549 113879620 -41750500 + L1Md_F2 LINE L1 2151 4200 -1683 3 1453 441 0 0 0 chr4 113879620 113879669 -41750451 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1453 16824 137 5 13 chr4 113879669 113880408 -41749712 + L1Md_F2 LINE L1 4201 4938 -945 3 1453 21863 88 2 6 chr4 113880420 113884211 -41745909 - L1Md_F2 LINE L1 -2 6580 2803 3 1453 35978 40 1 2 chr4 113884211 113891296 -41738824 - L1Md_T LINE L1 0 6585 1 3 1453 10686 103 14 7 chr4 113891297 113893726 -41736394 - L1Md_F2 LINE L1 -3066 2817 372 3 1453 4342 113 3 0 chr4 113893715 113894378 -41735742 + L1Md_F2 LINE L1 4922 5586 -297 3 1453 7544 63 27 0 chr4 113894380 113895348 -41734772 + L1Md_F2 LINE L1 5589 6582 0 3 1453 5366 78 0 3 chr4 113895341 113896049 -41734071 + L1_Mus1 LINE L1 5862 6567 0 3 1453 3641 184 51 5 chr4 113896087 113896867 -41733253 + L1_Mm LINE L1 4411 5226 -657 3 1453 10536 127 40 5 chr4 113896861 113898732 -41731388 - L1_Mur1 LINE L1 -508 5378 3443 3 1453 1788 180 26 6 chr4 113898934 113899286 -41730834 - RLTR15 LTR ERVK 0 359 1 3 1453 1463 42 5 5 chr4 113900794 113900985 -41729135 - L1Md_F3 LINE L1 -12 6572 6382 3 1454 523 256 94 89 chr4 113902724 113902904 -41727216 + B3 SINE B2 1 181 -14 3 1454 21 71 0 0 chr4 113903070 113903112 -41727008 + AT_rich Low_complexity Low_complexity 1 42 0 3 1454 187 260 0 74 chr4 113903236 113903290 -41726830 - L2 LINE L2 -999 2420 2371 3 1454 847 319 32 17 chr4 113903359 113903785 -41726335 + Lx8 LINE L1 6819 7275 -198 3 1454 630 58 0 0 chr4 113904521 113904608 -41725512 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1454 26554 71 1 1 chr4 113905107 113908820 -41721300 + L1Md_F2 LINE L1 1873 5586 -297 3 1454 8197 48 0 1 chr4 113908820 113909817 -41720303 + L1Md_F2 LINE L1 5587 6582 0 3 1454 30 0 0 0 chr4 113909849 113909879 -41720241 + AT_rich Low_complexity Low_complexity 1 30 0 3 1454 2799 153 12 20 chr4 113910077 113910310 -41719810 - Lx LINE L1 -136 6518 6289 4 1454 2960 79 5 2 chr4 113910310 113910705 -41719415 - MTA_Mm LTR MaLR 0 396 1 4 1454 2799 153 12 20 chr4 113910705 113910970 -41719150 - Lx LINE L1 -366 6288 6024 4 1454 2040 188 77 19 chr4 113911714 113912246 -41717874 - L1_Mur3 LINE L1 -2665 3215 2653 4 1454 646 182 47 16 chr4 113912246 113912374 -41717746 - RLTR19C LTR ERVK 0 715 584 4 1454 1497 91 18 5 chr4 113912370 113912591 -41717529 - MTA_Mm LTR MaLR -172 224 1 4 1454 1658 136 4 0 chr4 113912592 113912856 -41717264 - Lx LINE L1 -366 6288 6024 4 1454 1764 192 19 14 chr4 113912879 113913249 -41716871 - RLTR19C LTR ERVK -132 374 3 4 1454 690 218 83 4 chr4 113913251 113913481 -41716639 - L1_Mur3 LINE L1 -3223 2657 2410 4 1454 3267 180 12 34 chr4 113913470 113914170 -41715950 + L1_Mur3 LINE L1 3919 4606 -1274 4 1454 1936 90 263 12 chr4 113914170 113914497 -41715623 - RLTR9E LTR ERVK 0 409 1 4 1454 3267 180 12 34 chr4 113914497 113914542 -41715578 + L1_Mur3 LINE L1 4607 4648 -1232 4 1454 1758 162 16 25 chr4 113914993 113915359 -41714761 - L1_Mur3 LINE L1 -2195 3685 3323 4 1454 230 59 0 29 chr4 113915362 113915397 -41714723 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1454 415 44 53 53 chr4 113915398 113915493 -41714627 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 4 1454 361 161 75 0 chr4 113915494 113915587 -41714533 - L1_Mur3 LINE L1 -2544 3336 3237 4 1454 554 277 118 52 chr4 113915582 113915852 -41714268 + Lx6 LINE L1 5981 6268 -1192 4 1454 1756 311 132 13 chr4 113915854 113916673 -41713447 + Lx6 LINE L1 6518 7433 -27 4 1454 354 45 0 0 chr4 113917073 113917117 -41713003 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1454 23 54 0 0 chr4 113917594 113917631 -41712489 + AT_rich Low_complexity Low_complexity 1 37 0 4 1454 29806 82 2 4 chr4 113917981 113923281 -41706839 + L1Md_F2 LINE L1 296 5585 -298 4 1454 7894 52 5 4 chr4 113923282 113924275 -41705845 + L1Md_F2 LINE L1 5587 6580 -2 4 1454 532 335 11 84 chr4 113924327 113924690 -41705430 + L1VL1 LINE L1 16 534 -5884 4 1454 402 262 16 8 chr4 113924716 113924843 -41705277 + L1Md_F LINE L1 579 706 -5813 4 1454 2131 198 11 13 chr4 113924851 113925145 -41704975 + L1Md_F LINE L1 628 924 -5595 4 1454 387 0 0 0 chr4 113925145 113925188 -41704932 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1454 2131 198 11 13 chr4 113925188 113925370 -41704750 + L1Md_F LINE L1 925 1103 -5416 4 1454 542 221 33 60 chr4 113925371 113925559 -41704561 - RLTR43A LTR ERVK 0 364 201 4 1454 19933 124 6 9 chr4 113925714 113929212 -41700908 + L1VL1 LINE L1 1131 4617 -1266 4 1454 290 266 13 109 chr4 113929227 113929383 -41700737 + L1VL1 LINE L1 237 377 -6045 4 1454 392 261 21 14 chr4 113929518 113929658 -41700462 + L1Md_T LINE L1 675 815 -5801 4 1454 2183 172 5 158 chr4 113929655 113930505 -41699615 + L1Md_T LINE L1 725 1421 -4462 4 1454 28776 36 0 1 chr4 113930567 113934238 -41695882 + L1Md_T LINE L1 1918 5586 -297 4 1454 8047 53 0 0 chr4 113934239 113935231 -41694889 + L1Md_T LINE L1 5588 6579 -3 4 1454 293 0 27 0 chr4 113935234 113935271 -41694849 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 1454 5987 128 4 92 chr4 113935275 113936596 -41693524 + MusHAL1 LINE L1 217 1420 -1292 4 1454 1903 139 94 75 chr4 113936596 113937062 -41693058 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1454 733 131 84 98 chr4 113937064 113937267 -41692853 + IAPEz-int LTR ERVK 3 202 -1785 4 1454 248 302 0 0 chr4 113937267 113937320 -41692800 + RLTR27 LTR ERVK 223 275 -34 4 1454 3281 98 18 38 chr4 113937320 113937974 -41692146 + IAPEz-int LTR ERVK 168 662 -5819 4 1454 2465 88 0 3 chr4 113937974 113938317 -41691803 + IAPEz-int LTR ERVK 1359 1700 -4781 4 1454 6041 62 12 11 chr4 113938312 113939140 -41690980 + IAPEz-int LTR ERVK 5653 6481 0 4 1454 1791 126 93 115 chr4 113939140 113939626 -41690494 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1454 15721 123 11 4 chr4 113939627 113942285 -41687835 + L1_Mm LINE L1 2628 5332 -971 4 1454 4422 147 33 22 chr4 113942303 113943775 -41686345 + L1Md_F LINE L1 177 1667 -4216 4 1454 1387 157 0 11 chr4 113943764 113944048 -41686072 + L1Md_F LINE L1 1951 2231 -3652 4 1454 226 101 72 0 chr4 113944076 113944145 -41685975 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1454 346 226 41 23 chr4 113944226 113944398 -41685722 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 4 1454 295 217 50 21 chr4 113944414 113944555 -41685565 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 4 1454 304 189 39 71 chr4 113944655 113944895 -41685225 + (TATAA)n Simple_repeat Simple_repeat 1 232 0 4 1454 355 114 67 67 chr4 113945077 113945255 -41684865 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 1454 25 31 0 0 chr4 113945510 113945542 -41684578 + AT_rich Low_complexity Low_complexity 1 32 0 4 1454 1023 110 0 0 chr4 113947232 113947377 -41682743 - B1_Mus1 SINE Alu -2 146 2 4 1454 245 356 38 9 chr4 113948136 113948241 -41681879 + MTEb LTR MaLR 3 110 -249 4 1454 241 410 24 8 chr4 113948246 113948369 -41681751 - LTR88a LTR Gypsy -573 243 119 4 1454 254 246 0 21 chr4 113948483 113948555 -41681565 + MTEb LTR MaLR 275 344 -35 4 1454 32 26 0 0 chr4 113948944 113948983 -41681137 + AT_rich Low_complexity Low_complexity 1 39 0 4 1454 965 152 71 29 chr4 113948983 113949193 -41680927 - Lx3_Mus LINE L1 -2 7007 6789 4 1454 1126 272 22 19 chr4 113949196 113949500 -41680620 + Lx6 LINE L1 7136 7445 -15 4 1454 4021 101 33 5 chr4 113949500 113950099 -41680021 + Lx3_Mus LINE L1 6394 7009 0 4 1454 1126 272 22 19 chr4 113950099 113950113 -41680007 + Lx6 LINE L1 7446 7455 -5 4 1454 275 282 42 9 chr4 113950288 113950382 -41679738 + B1F1 SINE Alu 7 107 -13 4 1454 438 257 9 9 chr4 113950553 113950659 -41679461 - Lx8 LINE L1 -141 7332 7227 4 1454 190 0 67 0 chr4 113950906 113950936 -41679184 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 4 1454 33725 74 4 14 chr4 113950938 113957154 -41672966 - L1Md_F2 LINE L1 0 6638 489 4 1454 278 239 0 0 chr4 113957851 113957922 -41672198 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 4 1454 373 340 0 0 chr4 113958001 113958095 -41672025 - PB1D10 SINE Alu -7 110 17 4 1454 356 336 0 8 chr4 113959012 113959141 -41670979 + Lx8 LINE L1 6670 6797 -676 4 1454 294 317 0 0 chr4 113959224 113959328 -41670792 + L1_Mur3 LINE L1 3730 3833 -2047 4 1454 405 319 49 0 chr4 113959346 113959490 -41670630 + Lx8 LINE L1 6835 6985 -488 4 1454 316 167 19 0 chr4 113959682 113959736 -41670384 + Lx5 LINE L1 6826 6880 -170 4 1454 465 291 7 0 chr4 113959803 113959951 -41670169 - L1_Mur3 LINE L1 -1990 3890 3742 4 1454 340 188 68 30 chr4 113959988 113960120 -41670000 + L1_Rod LINE L1 1625 1761 -4086 4 1454 338 216 0 108 chr4 113960121 113960251 -41669869 + L1_Mur3 LINE L1 3612 3727 -2153 4 1454 323 263 99 15 chr4 113960266 113960467 -41669653 + L1_Mur3 LINE L1 3177 3394 -2486 4 1454 3864 139 16 6 chr4 113960478 113961106 -41669014 + Lx3A LINE L1 6348 6981 0 4 1454 2270 111 25 3 chr4 113961122 113961485 -41668635 + Lx2 LINE L1 6371 6741 -256 4 1454 492 276 47 0 chr4 113961486 113961613 -41668507 + ETnERV2-int LTR ERVK 7070 7202 -204 4 1454 1565 142 11 11 chr4 113962001 113962265 -41667855 + Lx LINE L1 6391 6654 0 4 1454 183 42 0 0 chr4 113962339 113962363 -41667757 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1454 733 158 7 0 chr4 113962376 113962522 -41667598 + Lx2 LINE L1 6851 6997 0 4 1454 24 0 0 0 chr4 113962602 113962626 -41667494 + AT_rich Low_complexity Low_complexity 1 24 0 4 1454 1487 293 50 29 chr4 113962632 113963440 -41666680 + L1_Mur3 LINE L1 3478 4302 -1578 4 1454 880 105 14 0 chr4 113963456 113963599 -41666521 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 4 1454 257 224 0 67 chr4 113963715 113963820 -41666300 - L1M2 LINE L1 -2806 3337 3240 4 1454 1176 82 0 0 chr4 113964743 113964889 -41665231 + B1_Mus1 SINE Alu 2 147 -1 4 1454 285 51 0 0 chr4 113964890 113964929 -41665191 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 1454 1333 275 24 83 chr4 113965029 113965748 -41664372 - RMER19C LTR ERVK -6 605 1 4 1454 1842 223 10 20 chr4 113965981 113966132 -41663988 + Lx7 LINE L1 6268 6417 -1279 4 1454 3923 148 115 83 chr4 113966132 113967010 -41663110 - RMER17A2 LTR ERVK 0 906 1 4 1454 1842 223 10 20 chr4 113967010 113967251 -41662869 + Lx7 LINE L1 6418 6656 -1040 4 1454 1958 169 0 0 chr4 113967248 113967579 -41662541 + Lx7 LINE L1 6780 7110 -586 4 1454 225 159 0 0 chr4 113967773 113967817 -41662303 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1454 218 81 0 26 chr4 113967816 113967854 -41662266 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1454 201 74 0 0 chr4 113969014 113969041 -41661079 + (TAGA)n Simple_repeat Simple_repeat 3 29 0 4 1454 4298 46 13 0 chr4 113969291 113969812 -41660308 - L1Md_T LINE L1 0 6582 6055 4 1454 213 279 55 89 chr4 113970256 113970411 -41659709 + MIRc SINE MIR 7 162 -100 4 1454 1173 62 7 0 chr4 113970414 113970560 -41659560 + B1_Mus1 SINE Alu 2 148 0 4 1454 254 37 35 69 chr4 113971513 113971571 -41658549 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 4 1454 639 255 7 27 chr4 113972223 113972372 -41657748 - RSINE1 SINE B4 -17 148 3 4 1454 365 54 18 0 chr4 113972411 113972467 -41657653 + (TTG)n Simple_repeat Simple_repeat 3 59 0 4 1454 247 333 30 20 chr4 113972468 113972569 -41657551 + MER5B DNA MER1_type 65 166 -12 4 1454 270 287 22 60 chr4 113972925 113973110 -41657010 + L1MA6 LINE L1 6100 6277 -23 4 1454 286 321 12 12 chr4 113974243 113974410 -41655710 + (CA)n Simple_repeat Simple_repeat 1 167 0 4 1454 756 98 23 0 chr4 113974411 113974544 -41655576 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 1454 213 232 0 67 chr4 113974578 113974638 -41655482 + L2b LINE L2 3317 3372 -3 4 1454 283 376 30 0 chr4 113976657 113976758 -41653362 + L2b LINE L2 3240 3343 -32 4 1454 253 296 28 0 chr4 113977005 113977076 -41653044 - MIRc SINE MIR -160 108 36 4 1454 522 0 0 0 chr4 113979118 113979176 -41650944 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1454 396 0 0 0 chr4 113979176 113979219 -41650901 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1454 1176 70 0 0 chr4 113979468 113979640 -41650480 + (TG)n Simple_repeat Simple_repeat 2 173 0 4 1454 848 271 49 8 chr4 113980305 113980551 -41649569 + MER31A LTR ERV1 4 259 -226 4 1454 266 123 18 0 chr4 113980555 113980612 -41649508 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1454 423 0 0 0 chr4 113980619 113980666 -41649454 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1454 225 244 0 0 chr4 113980962 113981007 -41649113 + MIR SINE MIR 23 67 -195 4 1454 1238 253 135 44 chr4 113982761 113983607 -41646513 + L1ME2 LINE L1 76 998 -5402 4 1454 2449 229 41 15 chr4 113983598 113983670 -41646450 + Lx9 LINE L1 6843 6915 -729 4 1454 2851 87 26 3 chr4 113983670 113984061 -41646059 + MTB LTR MaLR 1 400 0 4 1454 2449 229 41 15 chr4 113984061 113984595 -41645525 + Lx9 LINE L1 6916 7465 -179 4 1454 396 0 0 0 chr4 113984599 113984643 -41645477 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1454 584 277 97 62 chr4 113984745 113985128 -41644992 + L1ME2 LINE L1 3621 4014 -2305 4 1454 313 232 31 10 chr4 113985145 113985241 -41644879 + L1MB2 LINE L1 6061 6158 -13 4 1454 2788 289 54 44 chr4 113985256 113986369 -41643751 + Lx8 LINE L1 6350 7473 0 4 1454 368 315 74 0 chr4 113986468 113986617 -41643503 + L1ME2 LINE L1 5599 5758 -594 4 1454 371 321 76 20 chr4 113986658 113986855 -41643265 + L1ME2 LINE L1 5858 6065 -272 4 1454 188 320 99 46 chr4 113988709 113988840 -41641280 - MIRc SINE MIR -120 148 11 4 1454 1581 240 68 8 chr4 113989379 113989774 -41640346 - MTD LTR MaLR 0 419 1 4 1454 506 274 98 44 chr4 113989846 113990029 -41640091 - MER20 DNA MER1_type 0 219 27 4 1454 225 302 16 0 chr4 113990066 113990129 -41639991 + MLT1J2 LTR MaLR 260 323 -125 4 1454 386 293 147 102 chr4 113991114 113991448 -41638672 + MLT1A1 LTR MaLR 19 367 -41 5 1454 226 333 43 0 chr4 113994691 113994784 -41635336 - MIRc SINE MIR -87 181 85 5 1454 22 35 0 0 chr4 113995254 113995283 -41634837 + AT_rich Low_complexity Low_complexity 1 29 0 5 1454 5515 132 36 24 chr4 113995294 113996270 -41633850 - Lx3B LINE L1 -6 6967 5980 5 1454 1659 340 95 38 chr4 113996621 113997303 -41632817 + LTR78 LTR ERV1 34 767 -537 5 1454 4768 81 3 3 chr4 113997303 113997936 -41632184 + L1_Mus3 LINE L1 6002 6634 -4 5 1454 1659 340 95 38 chr4 113997936 113998066 -41632054 + LTR78 LTR ERV1 768 892 -412 5 1454 3147 271 87 21 chr4 113998699 113999731 -41630389 + Lx8 LINE L1 6129 7228 -245 5 1454 338 269 129 0 chr4 113999888 113999981 -41630139 + Lx8 LINE L1 7233 7337 -136 5 1454 22 35 0 0 chr4 114000065 114000094 -41630026 + AT_rich Low_complexity Low_complexity 1 29 0 1 1454 227 284 40 0 chr4 114000196 114000270 -41629850 + ID4 SINE ID 5 81 -2 2 1454 293 280 75 0 chr4 114001213 114001320 -41628800 - MIR SINE MIR -128 134 20 3 1454 283 96 19 19 chr4 114001837 114001881 -41628239 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1454 1170 117 0 0 chr4 114001881 114002060 -41628060 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 1454 283 96 19 19 chr4 114002060 114002068 -41628052 + (GA)n Simple_repeat Simple_repeat 1 8 0 6 1454 3136 170 149 80 chr4 114002419 114003252 -41626868 - RMER19B LTR ERVK -12 890 1 7 1454 713 263 188 26 chr4 114003731 114004082 -41626038 - MLT1A1 LTR MaLR 0 408 1 8 1454 43 0 0 0 chr4 114004566 114004609 -41625511 + AT_rich Low_complexity Low_complexity 1 43 0 9 1454 376 246 68 34 chr4 114004681 114004799 -41625321 - MIRb SINE MIR -83 185 64 1 1454 720 286 0 18 chr4 114005206 114005377 -41624743 + MTEa LTR MaLR 4 171 -208 1 1454 662 242 57 71 chr4 114005435 114005715 -41624405 - RLTR12B LTR ERVK -9 519 244 1 1454 831 254 10 55 chr4 114005712 114006018 -41624102 - RLTR12B LTR ERVK -253 315 40 1 1454 3128 278 114 17 chr4 114006030 114007080 -41623040 + MTE-int LTR MaLR 363 1514 -66 1 1454 1149 251 109 0 chr4 114007484 114007822 -41622298 + MTEb LTR MaLR 5 379 0 1 1454 3367 51 2 0 chr4 114011014 114011409 -41618711 - MTA_Mm LTR MaLR 0 396 1 1 1454 1211 187 284 0 chr4 114011972 114012250 -41617870 + RLTR15 LTR ERVK 3 359 0 1 1454 182 306 14 14 chr4 114012331 114012404 -41617716 - MIRb SINE MIR -76 192 120 1 1454 6076 98 22 3 chr4 114013631 114014494 -41615626 - Lx3_Mus LINE L1 0 7009 6131 1 1454 3732 75 48 4 chr4 114014496 114014799 -41615321 + Lx3_Mus LINE L1 5605 5907 -1102 2 1454 195 42 0 0 chr4 114014799 114014823 -41615297 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1454 3732 75 48 4 chr4 114014823 114015017 -41615103 + Lx3_Mus LINE L1 5908 6122 -887 2 1454 834 181 197 0 chr4 114015730 114015918 -41614202 + URR1A DNA MER1_type 2 226 0 2 1454 254 281 47 0 chr4 114015925 114015989 -41614131 + RSINE1 SINE B4 3 69 -96 2 1454 201 280 6 25 chr4 114015999 114016077 -41614043 + L2a LINE L2 3300 3413 -13 2 1454 180 226 0 0 chr4 114016085 114016147 -41613973 + (TGGA)n Simple_repeat Simple_repeat 1 62 0 2 1454 207 325 74 4 chr4 114016214 114016375 -41613745 + MIRc SINE MIR 15 182 -26 2 1454 189 349 30 24 chr4 114018061 114018192 -41611928 + MIR SINE MIR 21 153 -115 2 1454 760 304 14 0 chr4 114019372 114019586 -41610534 + ID_B1 SINE B4 2 218 -6 2 1454 23 0 0 0 chr4 114020019 114020042 -41610078 + AT_rich Low_complexity Low_complexity 1 23 0 2 1454 3560 50 18 2 chr4 114020224 114020669 -41609451 - L1Md_F2 LINE L1 0 6582 6131 3 1454 481 242 16 12 chr4 114021355 114021484 -41608636 + B4A SINE B4 136 262 -30 3 1454 384 22 0 0 chr4 114021486 114021531 -41608589 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1454 235 244 131 6 chr4 114023184 114023302 -41606818 + MIR SINE MIR 119 266 -2 3 1454 336 207 166 29 chr4 114023704 114023843 -41606277 - Lx8 LINE L1 -20 7453 7296 3 1454 1664 176 158 11 chr4 114024500 114024867 -41605253 - MTC LTR MaLR 0 421 1 3 1454 2715 201 177 20 chr4 114025494 114026064 -41604056 + RMER1A Other Other 85 887 -143 3 1454 498 46 0 0 chr4 114026064 114026129 -41603991 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1454 2715 192 210 5 chr4 114026129 114026224 -41603896 + RMER1A Other Other 888 1018 -12 3 1454 408 40 0 0 chr4 114026224 114026274 -41603846 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1454 225 83 0 0 chr4 114026558 114026594 -41603526 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1454 201 167 0 0 chr4 114026717 114026753 -41603367 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1454 1043 203 246 0 chr4 114027037 114027367 -41602753 + MTD LTR MaLR 1 411 -8 4 1454 284 229 64 38 chr4 114027698 114027805 -41602315 - MIR SINE MIR -106 156 50 4 1454 914 71 7 0 chr4 114028436 114028576 -41601544 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1454 495 0 0 0 chr4 114030466 114030521 -41599599 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1454 2009 125 72 0 chr4 114030969 114031274 -41598846 - ORR1A2 LTR MaLR 0 327 1 4 1454 230 307 94 0 chr4 114031367 114031494 -41598626 - MIRm SINE MIR -101 175 37 4 1454 976 222 58 10 chr4 114032082 114032287 -41597833 + B3 SINE B2 1 215 -1 4 1455 270 0 0 0 chr4 114033494 114033524 -41596596 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4 1455 492 270 44 98 chr4 114033576 114033781 -41596339 + B3A SINE B2 5 198 0 4 1455 311 256 30 144 chr4 114034466 114034643 -41595477 + MLT1A1 LTR MaLR 4 177 -197 5 1455 954 179 253 47 chr4 114034752 114034879 -41595241 - RMER17C LTR ERVK 0 410 287 5 1455 477 34 0 0 chr4 114034879 114034938 -41595182 + (TATAG)n Simple_repeat Simple_repeat 1 59 0 5 1455 954 179 253 47 chr4 114034938 114034980 -41595140 - RMER17C LTR ERVK -124 286 211 5 1455 336 24 0 0 chr4 114034980 114035021 -41595099 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1455 954 179 253 47 chr4 114035021 114035190 -41594930 - RMER17C LTR ERVK -200 210 4 5 1455 972 109 0 0 chr4 114035190 114035318 -41594802 - RMER17C-int LTR ERVK 0 3238 3111 5 1455 210 232 35 18 chr4 114035912 114035969 -41594151 - L3 LINE CR1 -3 4486 4429 5 1455 396 0 0 0 chr4 114036100 114036144 -41593976 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 5 1455 414 125 0 0 chr4 114037453 114037533 -41592587 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1455 297 335 29 58 chr4 114037536 114037707 -41592413 - MIR SINE MIR -69 193 28 5 1455 828 141 6 12 chr4 114038768 114038919 -41591201 + GA-rich Low_complexity Low_complexity 3 152 0 5 1455 906 10 0 0 chr4 114038919 114039022 -41591098 + (GGAAA)n Simple_repeat Simple_repeat 2 104 0 5 1455 828 141 6 12 chr4 114039022 114039042 -41591078 + polypurine Low_complexity Low_complexity 153 172 0 6 1455 210 149 24 11 chr4 114039612 114039668 -41590452 - MIRc SINE MIR -99 169 112 6 1455 381 43 0 0 chr4 114042420 114042467 -41587653 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1455 281 50 16 48 chr4 114044707 114044770 -41585350 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 6 1455 1090 82 0 13 chr4 114044771 114044920 -41585200 - B1_Mus1 SINE Alu 0 148 2 6 1455 357 283 9 26 chr4 114045088 114045204 -41584916 - MIRb SINE MIR -27 241 128 6 1455 193 291 126 11 chr4 114046453 114046540 -41583580 + MIR SINE MIR 15 111 -151 6 1455 393 22 0 0 chr4 114046766 114046812 -41583308 + (TATG)n Simple_repeat Simple_repeat 3 48 0 6 1455 918 249 105 20 chr4 114046813 114047157 -41582963 - L1MB4 LINE L1 -49 6131 5759 6 1455 2594 64 14 6 chr4 114047319 114047666 -41582454 - L1Md_F2 LINE L1 -4 6578 6229 6 1455 1422 188 103 18 chr4 114047816 114048157 -41581963 - ORR1D1 LTR MaLR -4 370 1 7 1455 207 195 0 24 chr4 114048938 114048980 -41581140 + CT-rich Low_complexity Low_complexity 2 42 0 7 1455 263 342 107 33 chr4 114049021 114049415 -41580705 - L2a LINE L2 -13 3413 2940 7 1455 207 303 40 0 chr4 114049504 114049580 -41580540 - L2a LINE L2 -623 2796 2718 7 1455 204 360 17 17 chr4 114051681 114051797 -41578323 - MIRb SINE MIR 0 268 153 7 1455 270 56 0 0 chr4 114052605 114052641 -41577479 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1455 24 0 0 0 chr4 114052867 114052891 -41577229 + AT_rich Low_complexity Low_complexity 1 24 0 7 1455 444 211 111 24 chr4 114052891 114053017 -41577103 - Lx5 LINE L1 0 7050 6914 7 1455 507 134 0 0 chr4 114053018 114053100 -41577020 + (CA)n Simple_repeat Simple_repeat 2 83 0 7 1455 1498 160 32 14 chr4 114053109 114053382 -41576738 - Lx5 LINE L1 -170 6880 6621 7 1455 353 246 221 8 chr4 114053404 114053531 -41576589 - ID_B1 SINE B4 -21 203 50 7 1455 1703 176 15 80 chr4 114053546 114053935 -41576185 + ORR1D1 LTR MaLR 3 366 -8 7 1455 308 246 0 0 chr4 114053952 114054013 -41576107 - ID SINE ID -163 61 1 7 1455 270 81 0 0 chr4 114054363 114054400 -41575720 + (CTTAT)n Simple_repeat Simple_repeat 2 38 0 8 1455 4055 108 2 11 chr4 114054400 114054973 -41575147 - Lx3_Mus LINE L1 -9 7000 6433 8 1455 493 296 54 27 chr4 114054986 114055170 -41574950 + MER5A DNA MER1_type 1 189 0 8 1455 275 0 0 28 chr4 114057138 114057174 -41572946 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8 1455 194 316 62 77 chr4 114057789 114057998 -41572122 - MIRb SINE MIR -23 245 40 8 1455 666 84 0 0 chr4 114058384 114058491 -41571629 + (TGAG)n Simple_repeat Simple_repeat 4 110 0 8 1455 405 0 0 0 chr4 114058891 114058936 -41571184 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1455 222 69 0 0 chr4 114059597 114059626 -41570494 + MIR SINE MIR 117 145 -63 8 1455 518 248 50 28 chr4 114061441 114061582 -41568538 + RSINE1 SINE B4 5 148 -17 8 1455 534 316 126 19 chr4 114063134 114063617 -41566503 + L1M5 LINE L1 5260 5794 -400 8 1455 229 320 20 40 chr4 114063853 114063954 -41566166 + ID_B1 SINE B4 81 179 -45 9 1455 357 311 85 0 chr4 114063864 114063970 -41566150 + PB1 SINE Alu 11 125 -2 9 1455 291 229 0 0 chr4 114063977 114064025 -41566095 + ID4 SINE ID 14 61 -22 9 1455 586 68 23 0 chr4 114064050 114064138 -41565982 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 9 1455 577 292 108 48 chr4 114064280 114065366 -41564754 + L1MEc LINE L1 2248 3415 -2904 9 1455 600 14 0 0 chr4 114065434 114065503 -41564617 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 9 1455 325 313 126 23 chr4 114065584 114066133 -41563987 + L1MEc LINE L1 4486 5093 -1220 9 1455 212 322 0 32 chr4 114066149 114066242 -41563878 + GA-rich Low_complexity Low_complexity 3 92 0 9 1455 333 153 23 23 chr4 114066779 114066866 -41563254 + GA-rich Low_complexity Low_complexity 3 89 0 9 1455 774 252 90 7 chr4 114066882 114067299 -41562821 + L1MEc LINE L1 5265 5712 -625 9 1455 531 201 6 0 chr4 114067675 114067862 -41562258 + (CA)n Simple_repeat Simple_repeat 1 188 0 9 1455 270 373 62 33 chr4 114068193 114068434 -41561686 + L3 LINE CR1 4190 4437 -52 9 1455 333 125 0 0 chr4 114068918 114068974 -41561146 + (TCC)n Simple_repeat Simple_repeat 3 58 0 1 1455 321 153 0 0 chr4 114070032 114070104 -41560016 + CT-rich Low_complexity Low_complexity 1 72 0 1 1455 496 250 7 90 chr4 114070148 114070293 -41559827 - B1F SINE Alu -5 144 12 1 1455 195 0 86 0 chr4 114070307 114070342 -41559778 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1455 445 192 49 29 chr4 114070342 114070444 -41559676 - B3 SINE B2 -1 215 112 1 1455 417 351 131 35 chr4 114070464 114070520 -41559600 + L2b LINE L2 2214 2266 -1153 1 1455 423 98 0 0 chr4 114070520 114070581 -41559539 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 1 1455 417 345 113 43 chr4 114070581 114071355 -41558765 + L2b LINE L2 2267 3108 -267 1 1455 297 293 59 29 chr4 114071631 114071733 -41558387 + MIR SINE MIR 53 157 -105 1 1455 555 291 94 11 chr4 114071887 114072068 -41558052 - MER20 DNA MER1_type 0 219 24 1 1455 194 358 81 8 chr4 114072122 114072246 -41557874 - MIRb SINE MIR -135 133 1 1 1455 248 286 57 0 chr4 114072771 114072841 -41557279 + MIRc SINE MIR 80 153 -115 1 1455 661 204 72 7 chr4 114072846 114072999 -41557121 + B4A SINE B4 4 166 -126 1 1455 268 317 63 37 chr4 114073489 114073679 -41556441 + L1M2 LINE L1 5523 5717 -574 1 1455 300 226 158 42 chr4 114074102 114074222 -41555898 - PB1D10 SINE Alu 0 149 16 1 1455 270 0 0 0 chr4 114074233 114074263 -41555857 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1455 464 291 0 26 chr4 114074270 114074383 -41555737 - ID_B1 SINE B4 -39 185 76 1 1455 247 325 25 0 chr4 114074579 114074659 -41555461 + L2c LINE L2 3253 3334 -53 1 1455 551 253 77 67 chr4 114075540 114075735 -41554385 + B3A SINE B2 2 198 0 1 1455 432 298 130 54 chr4 114075774 114076051 -41554069 - L1MB8 LINE L1 0 6178 5881 1 1455 371 249 82 45 chr4 114076076 114076232 -41553888 - L1MB8 LINE L1 -382 5802 5648 1 1455 531 138 0 0 chr4 114077392 114077479 -41552641 + (TCC)n Simple_repeat Simple_repeat 3 89 0 1 1455 808 57 182 24 chr4 114077479 114077605 -41552515 - B1_Mm SINE Alu 0 147 2 1 1455 306 0 0 0 chr4 114078018 114078052 -41552068 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1455 218 179 18 0 chr4 114078469 114078525 -41551595 + GA-rich Low_complexity Low_complexity 2 58 0 1 1455 191 140 20 0 chr4 114078587 114078637 -41551483 + (CGAG)n Simple_repeat Simple_repeat 4 54 0 1 1455 275 243 51 32 chr4 114078655 114078700 -41551420 + (CCCCG)n Simple_repeat Simple_repeat 1 40 0 1 1455 218 56 0 27 chr4 114078700 114078737 -41551383 + (CCCGG)n Simple_repeat Simple_repeat 3 38 0 1 1455 275 243 51 32 chr4 114078737 114078848 -41551272 + (CCCCG)n Simple_repeat Simple_repeat 1 119 0 1 1455 28 29 0 0 chr4 114078863 114078898 -41551222 + GC_rich Low_complexity Low_complexity 1 35 0 1 1455 500 345 57 22 chr4 114081152 114081380 -41548740 - MIRb SINE MIR -3 265 30 1 1455 470 267 32 64 chr4 114084640 114084796 -41545324 + MIR3 SINE MIR 52 202 -6 1 1455 341 273 190 21 chr4 114084807 114084949 -41545171 - MIRb SINE MIR -35 233 68 1 1455 377 241 83 41 chr4 114085148 114085269 -41544851 + B1F1 SINE Alu 16 141 -8 1 1455 241 261 40 92 chr4 114085282 114085358 -41544762 + ID4_ SINE ID 10 81 -2 1 1455 291 270 184 38 chr4 114085502 114085660 -41544460 - CYRA11_Mm Unknown Y-chromosome -225 392 212 1 1455 671 140 35 0 chr4 114085566 114085680 -41544440 + URR1B DNA MER1_type 91 208 -17 1 1455 192 125 0 0 chr4 114086193 114086225 -41543895 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1455 266 338 75 46 chr4 114086266 114086505 -41543615 - MARNA DNA Mariner -338 248 3 1 1455 626 261 112 105 chr4 114086760 114087064 -41543056 - MLT1A0 LTR MaLR -56 309 4 1 1455 823 121 14 0 chr4 114087482 114087622 -41542498 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 1 1455 236 263 56 83 chr4 114089276 114089384 -41540736 + L2c LINE L2 3055 3159 -228 1 1455 185 308 0 0 chr4 114090791 114090843 -41539277 + MIR SINE MIR 85 136 -126 1 1455 182 303 56 11 chr4 114090940 114091030 -41539090 - L2a LINE L2 -9 3417 3324 1 1455 368 221 78 71 chr4 114091401 114091423 -41538697 + B4A SINE B4 75 144 -148 1 1455 726 101 0 0 chr4 114091423 114091522 -41538598 + B1_Mus1 SINE Alu 4 102 -46 1 1455 1091 123 0 6 chr4 114091523 114091687 -41538433 + B2_Mm2 SINE B2 2 164 -31 1 1455 335 125 0 18 chr4 114091687 114091744 -41538376 + B1_Mm SINE Alu 87 142 -5 1 1455 189 0 0 0 chr4 114093282 114093303 -41536817 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1455 213 327 76 9 chr4 114093594 114093699 -41536421 - MIR SINE MIR -130 132 21 1 1455 225 0 0 0 chr4 114096079 114096104 -41534016 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1455 781 252 192 32 chr4 114096149 114096457 -41533663 - MLT1A0 LTR MaLR -6 359 3 1 1455 467 309 107 0 chr4 114097049 114097227 -41532893 + L1MD2 LINE L1 6163 6359 0 1 1455 261 225 28 14 chr4 114097303 114097375 -41532745 + GA-rich Low_complexity Low_complexity 3 75 0 1 1455 315 298 122 24 chr4 114097562 114097733 -41532387 + L2a LINE L2 3216 3424 -2 1 1455 202 288 55 55 chr4 114097925 114098035 -41532085 - L2c LINE L2 -24 3363 3254 1 1455 1056 108 0 0 chr4 114098041 114098198 -41531922 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 1 1455 1026 276 131 69 chr4 114098875 114099259 -41530861 - L1MC3 LINE L1 -1 7784 7387 1 1455 213 65 0 0 chr4 114099259 114099290 -41530830 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1455 1026 276 131 69 chr4 114099290 114099309 -41530811 - L1MC3 LINE L1 -399 7386 7376 1 1455 2112 83 0 4 chr4 114099309 114099588 -41530532 - L1_Mus1 LINE L1 0 6567 6290 1 1455 1026 276 131 69 chr4 114099588 114099809 -41530311 - L1MC3 LINE L1 -410 7375 7120 1 1455 251 318 106 70 chr4 114100156 114100383 -41529737 - L2c LINE L2 -593 2826 2592 1 1455 1528 158 130 13 chr4 114101213 114101528 -41528592 - MTC LTR MaLR 0 421 70 1 1455 432 55 0 0 chr4 114101528 114101583 -41528537 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1455 2193 178 99 48 chr4 114101587 114102071 -41528049 - Lx4B LINE L1 -17 7041 6533 1 1455 459 170 4 0 chr4 114102071 114102158 -41527962 - MTC LTR MaLR -321 98 10 1 1455 632 307 137 4 chr4 114102167 114102422 -41527698 - MLT1A0 LTR MaLR -76 289 1 1 1455 24 0 0 0 chr4 114102612 114102636 -41527484 + AT_rich Low_complexity Low_complexity 1 24 0 1 1455 830 151 238 0 chr4 114103662 114103843 -41526277 + URR1B DNA MER1_type 1 224 -1 1 1455 254 295 57 76 chr4 114104027 114104185 -41525935 + MLT1H LTR MaLR 308 522 -27 1 1455 353 218 62 25 chr4 114105156 114105236 -41524884 + MIRc SINE MIR 43 125 -143 1 1455 236 325 93 43 chr4 114106641 114106802 -41523318 - Tigger15a DNA TcMar -443 272 104 1 1455 195 42 0 0 chr4 114108351 114108375 -41521745 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1 1455 539 219 8 0 chr4 114110249 114110372 -41519748 + Lx7 LINE L1 7568 7691 -5 1 1455 225 302 0 16 chr4 114110514 114110578 -41519542 + ID4_ SINE ID 4 66 -17 1 1455 303 146 0 0 chr4 114110582 114110637 -41519483 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1455 500 98 22 0 chr4 114110645 114110737 -41519383 + (CAGAGA)n Simple_repeat Simple_repeat 2 95 0 1 1455 645 14 0 0 chr4 114111642 114111716 -41518404 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1455 212 222 0 0 chr4 114112298 114112343 -41517777 + MIR SINE MIR 105 149 -59 1 1455 180 200 87 58 chr4 114113303 114113372 -41516748 - MIRc SINE MIR -117 151 81 1 1455 771 11 0 0 chr4 114114079 114114167 -41515953 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1455 315 71 0 0 chr4 114114305 114114347 -41515773 + (AAATG)n Simple_repeat Simple_repeat 4 45 0 1 1455 687 229 15 0 chr4 114114448 114114579 -41515541 + RSINE1 SINE B4 7 139 -26 1 1455 306 0 0 0 chr4 114114637 114114671 -41515449 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1455 201 294 0 0 chr4 114115833 114115884 -41514236 + MIRc SINE MIR 85 135 -133 1 1455 616 311 80 75 chr4 114116142 114116941 -41513179 + L1ME1 LINE L1 5355 6157 -22 1 1455 489 17 0 0 chr4 114118006 114118064 -41512056 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1455 6850 35 1 0 chr4 114118143 114118942 -41511178 - L1Md_F2 LINE L1 0 6582 5783 1 1455 252 282 101 47 chr4 114119914 114120063 -41510057 + MIR SINE MIR 104 260 -2 1 1455 239 315 73 90 chr4 114120691 114120991 -41509129 + RMER12 LTR ERVK 734 1028 -294 1 1455 544 228 0 19 chr4 114122745 114122848 -41507272 + PB1D10 SINE Alu 13 113 -4 1 1455 241 200 125 62 chr4 114122946 114123026 -41507094 - MARNA DNA Mariner -172 414 330 1 1455 1574 218 111 28 chr4 114124611 114124998 -41505122 - MTD LTR MaLR 0 419 1 1 1455 511 253 20 106 chr4 114125009 114125056 -41505064 - HAL1-2a_MD LINE L1 -502 2522 2478 1 1455 636 245 21 7 chr4 114125056 114125200 -41504920 - B1_Mur1 SINE Alu -3 146 1 1 1455 511 253 20 106 chr4 114125200 114125351 -41504769 - HAL1-2a_MD LINE L1 -547 2477 2341 1 1455 368 305 60 49 chr4 114125367 114125550 -41504570 - HAL1-2a_MD LINE L1 -560 2464 2280 1 1455 218 386 45 0 chr4 114126247 114126335 -41503785 - MIRc SINE MIR -148 120 29 1 1455 317 22 44 0 chr4 114126339 114126384 -41503736 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1455 282 73 0 0 chr4 114126407 114126448 -41503672 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1455 412 272 95 13 chr4 114126917 114127107 -41503013 + MIRc SINE MIR 47 254 -8 1 1455 212 338 122 43 chr4 114127931 114128070 -41502050 + MIRb SINE MIR 102 251 -17 1 1455 385 277 74 7 chr4 114128159 114128308 -41501812 + L1MA5 LINE L1 5032 5190 -953 1 1455 420 20 0 0 chr4 114128460 114128509 -41501611 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1455 640 262 218 18 chr4 114128524 114128931 -41501189 + L1MA5 LINE L1 5472 5927 -373 1 1455 390 289 35 21 chr4 114128931 114129076 -41501044 - RSINE1 SINE B4 -2 163 17 1 1455 301 289 72 22 chr4 114129251 114129389 -41500731 - MER3 DNA MER1_type -44 165 21 1 1455 192 278 27 126 chr4 114129952 114130063 -41500057 - MIR SINE MIR -46 216 117 1 1455 205 150 50 0 chr4 114130388 114130428 -41499692 + CT-rich Low_complexity Low_complexity 5 46 0 2 1455 190 279 50 140 chr4 114130720 114130820 -41499300 + L2 LINE L2 2430 2520 -899 2 1455 221 290 0 16 chr4 114132954 114133017 -41497103 + GA-rich Low_complexity Low_complexity 1 62 0 2 1455 780 11 0 0 chr4 114133595 114133684 -41496436 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1455 324 0 0 0 chr4 114133684 114133720 -41496400 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1455 387 366 0 25 chr4 114134825 114134982 -41495138 - MIRc SINE MIR -113 155 3 2 1455 372 279 0 0 chr4 114135084 114135170 -41494950 - MER5A1 DNA MER1_type -2 164 79 2 1455 303 28 0 0 chr4 114136063 114136099 -41494021 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1455 465 343 70 35 chr4 114136852 114137166 -41492954 + L1M5 LINE L1 4197 4521 -1625 2 1455 468 0 0 0 chr4 114137177 114137229 -41492891 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1455 1460 242 85 27 chr4 114137322 114137660 -41492460 - L1M3 LINE L1 -1125 5015 4652 2 1455 183 80 0 0 chr4 114137660 114137685 -41492435 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1455 1460 242 85 27 chr4 114137685 114137936 -41492184 - L1M3 LINE L1 -1489 4651 4393 2 1455 719 296 153 19 chr4 114138235 114138555 -41491565 + MLT2D LTR ERVL 7 369 -45 2 1455 214 254 0 73 chr4 114139741 114139809 -41490311 - MIR3 SINE MIR -31 177 115 2 1455 288 297 0 0 chr4 114140108 114140182 -41489938 + (TTCA)n Simple_repeat Simple_repeat 3 76 0 2 1455 208 324 77 98 chr4 114142291 114142565 -41487555 + L2b LINE L2 3108 3375 0 2 1455 233 250 0 0 chr4 114143545 114143589 -41486531 - L2a LINE L2 -12 3414 3371 2 1455 423 172 0 0 chr4 114143880 114143944 -41486176 + B3 SINE B2 2 65 -151 2 1455 587 202 48 42 chr4 114144291 114144456 -41485664 + RMER10A LTR ERVL 275 440 -2 2 1455 183 356 123 0 chr4 114144651 114144797 -41485323 + L3 LINE CR1 4103 4266 -223 2 1455 372 292 31 0 chr4 114145975 114146071 -41484049 + MER45A DNA Tip100 79 177 -1 2 1455 339 302 75 103 chr4 114148102 114148423 -41481697 - L1ME4a LINE L1 0 6124 5813 2 1455 390 0 0 77 chr4 114148501 114148566 -41481554 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 2 1455 22 35 0 0 chr4 114149298 114149327 -41480793 + AT_rich Low_complexity Low_complexity 1 29 0 2 1455 199 217 62 62 chr4 114149581 114149645 -41480475 - L3b LINE CR1 -238 244 181 2 1455 372 266 66 99 chr4 114150484 114150672 -41479448 + MIRb SINE MIR 45 234 -34 2 1455 1045 229 5 19 chr4 114153142 114153356 -41476764 + B3 SINE B2 1 211 -5 2 1455 245 260 27 27 chr4 114153719 114153794 -41476326 + L2c LINE L2 3110 3184 -203 2 1455 206 348 14 0 chr4 114153970 114154039 -41476081 + L2c LINE L2 3252 3321 -66 2 1455 186 287 118 18 chr4 114155294 114155404 -41474716 + L3 LINE CR1 3976 4096 -393 2 1455 4046 54 0 8 chr4 114157169 114157670 -41472450 - L1Md_F2 LINE L1 -12 6570 6074 2 1455 2546 31 0 0 chr4 114157670 114157964 -41472156 + L1Md_F2 LINE L1 5642 5935 -647 2 1455 360 0 0 0 chr4 114158005 114158045 -41472075 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1455 459 126 0 0 chr4 114158045 114158139 -41471981 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1455 258 311 76 57 chr4 114158711 114158922 -41471198 + L2a LINE L2 3200 3414 -12 2 1455 198 293 63 87 chr4 114160785 114160912 -41469208 - L2 LINE L2 -582 2837 2714 2 1455 364 304 175 53 chr4 114161268 114161360 -41468760 + L1ME3A LINE L1 5637 5750 -412 2 1455 1634 222 60 3 chr4 114161360 114161712 -41468408 - ORR1D1 LTR MaLR 0 374 3 2 1455 364 304 175 53 chr4 114161712 114161939 -41468181 + L1ME3A LINE L1 5747 5995 -167 2 1455 439 309 94 16 chr4 114162233 114162424 -41467696 + LTR16C LTR ERVL 15 220 -269 2 1455 1856 196 48 20 chr4 114162449 114162849 -41467271 - MTD LTR MaLR -8 411 1 2 1455 303 235 30 123 chr4 114163499 114163614 -41466506 - MIR SINE MIR -144 118 19 2 1455 259 312 25 0 chr4 114163630 114163710 -41466410 + L2a LINE L2 3345 3426 0 2 1456 914 252 48 0 chr4 114164412 114164618 -41465502 - B3 SINE B2 0 216 1 2 1456 258 176 0 0 chr4 114164652 114164703 -41465417 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1456 528 318 172 30 chr4 114165253 114166025 -41464095 + L2 LINE L2 2099 2980 -439 2 1456 737 279 72 24 chr4 114167148 114167357 -41462763 + ID_B1 SINE B4 6 224 0 2 1456 686 116 7 39 chr4 114167366 114167519 -41462601 + GA-rich Low_complexity Low_complexity 5 152 0 2 1456 615 90 90 0 chr4 114167576 114167709 -41462411 + GA-rich Low_complexity Low_complexity 1 145 0 2 1456 917 37 85 0 chr4 114167709 114167873 -41462247 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 2 1456 180 298 141 12 chr4 114168427 114168512 -41461608 - MIRc SINE MIR -128 140 45 2 1456 385 282 189 16 chr4 114168869 114169060 -41461060 - MLT1J1 LTR MaLR -220 224 1 2 1456 327 308 43 50 chr4 114170187 114170327 -41459793 + MIRb SINE MIR 28 166 -102 2 1456 822 240 5 44 chr4 114170328 114170533 -41459587 + B3A SINE B2 1 197 -1 2 1456 3580 181 113 101 chr4 114170791 114171682 -41458438 - RMER19B LTR ERVK 0 902 1 2 1456 481 271 94 25 chr4 114171682 114171837 -41458283 - B4A SINE B4 -79 213 48 2 1456 200 310 0 112 chr4 114172154 114172252 -41457868 + L2b LINE L2 3289 3375 0 2 1456 432 147 0 0 chr4 114172254 114172329 -41457791 + (TGGA)n Simple_repeat Simple_repeat 4 78 0 2 1456 200 197 38 112 chr4 114172670 114172750 -41457370 - L2b LINE L2 -204 3171 3098 2 1456 572 350 67 44 chr4 114173401 114173834 -41456286 - L2b LINE L2 -1 3374 2932 2 1456 291 256 38 25 chr4 114173981 114174061 -41456059 - MLT1I LTR MaLR -21 390 310 2 1456 3065 223 68 74 chr4 114174980 114175845 -41454275 + RMER13A LTR ERVK 1 860 0 2 1456 1611 230 95 5 chr4 114175924 114176304 -41453816 + MTC LTR MaLR 8 421 0 2 1456 215 100 0 48 chr4 114176527 114176569 -41453551 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1456 495 112 0 0 chr4 114177622 114177711 -41452409 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1456 246 324 75 14 chr4 114178407 114178554 -41451566 - LTR79 LTR ERVL -48 479 324 2 1456 5002 34 2 0 chr4 114178818 114179580 -41450540 - L1Md_F2 LINE L1 -530 6052 5290 2 1456 4140 53 4 4 chr4 114179580 114180092 -41450028 + L1Md_F2 LINE L1 6071 6582 0 2 1456 189 0 0 0 chr4 114180477 114180498 -41449622 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2 1456 740 103 0 8 chr4 114180530 114180647 -41449473 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 2 1456 1348 80 0 41 chr4 114180889 114181085 -41449035 - B2_Mm2 SINE B2 -7 188 1 2 1456 282 116 0 0 chr4 114181534 114181577 -41448543 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1456 188 294 247 32 chr4 114181778 114181936 -41448184 + L2a LINE L2 3223 3414 -12 2 1456 221 336 135 14 chr4 114182507 114182655 -41447465 - MIRc SINE MIR -35 233 68 2 1456 555 16 0 0 chr4 114183114 114183178 -41446942 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1456 193 309 49 0 chr4 114183525 114183606 -41446514 + MIR3 SINE MIR 102 186 -22 2 1456 216 0 0 0 chr4 114184070 114184094 -41446026 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1456 252 0 0 0 chr4 114184787 114184815 -41445305 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1456 228 340 58 81 chr4 114185786 114185959 -41444161 + MIR SINE MIR 65 233 -29 2 1456 256 185 74 0 chr4 114187010 114187064 -41443056 - RSINE1 SINE B4 -83 82 25 2 1456 198 143 0 0 chr4 114187871 114187906 -41442214 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 2 1456 265 164 17 52 chr4 114188747 114188805 -41441315 - MIRb SINE MIR -48 220 165 2 1456 261 280 29 29 chr4 114190348 114190451 -41439669 + MT2B2 LTR ERVL 139 241 -343 2 1456 272 243 129 0 chr4 114190395 114190465 -41439655 + PB1D10 SINE Alu 19 97 -20 2 1456 228 324 203 28 chr4 114191438 114191581 -41438539 + MIRb SINE MIR 44 211 -57 2 1456 419 306 32 8 chr4 114191718 114191843 -41438277 - RSINE1 SINE B4 -37 128 1 2 1456 835 235 11 42 chr4 114192731 114192922 -41437198 + B3 SINE B2 32 216 0 2 1456 299 168 73 27 chr4 114193032 114193142 -41436978 - L1MC LINE L1 -2191 3955 3841 2 1456 1484 234 71 9 chr4 114193167 114193620 -41436500 - L1MC LINE L1 -2387 3759 3279 2 1456 380 331 30 71 chr4 114193651 114193820 -41436300 - MER20 DNA MER1_type -56 163 2 2 1456 443 269 139 37 chr4 114197188 114197457 -41432663 - MLT1A LTR MaLR 0 374 1 2 1456 414 323 75 10 chr4 114198013 114198222 -41431898 - MIRb SINE MIR -38 230 7 2 1456 333 68 0 0 chr4 114198404 114198448 -41431672 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2 1456 373 217 84 0 chr4 114198448 114198531 -41431589 - L1M2 LINE L1 -3309 2834 2745 2 1456 22 56 0 0 chr4 114198636 114198672 -41431448 + AT_rich Low_complexity Low_complexity 1 36 0 2 1456 333 140 0 0 chr4 114198876 114198933 -41431187 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 2 1456 317 296 0 0 chr4 114199581 114199669 -41430451 + PB1D10 SINE Alu 27 114 -3 2 1456 5901 80 31 10 chr4 114199814 114199911 -41430209 - L1VL2 LINE L1 -1789 1826 1723 2 1456 4289 11 38 0 chr4 114199911 114200386 -41429734 + MT2_Mm LTR ERVL 1 493 0 2 1456 6876 79 15 14 chr4 114200386 114201991 -41428129 - L1VL2 LINE L1 -1893 1722 116 2 1456 753 289 53 23 chr4 114202238 114202504 -41427616 + B4A SINE B4 1 274 -18 2 1456 225 261 0 30 chr4 114202523 114202590 -41427530 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1456 957 151 0 0 chr4 114202698 114202864 -41427256 + CT-rich Low_complexity Low_complexity 5 170 0 2 1456 302 352 76 0 chr4 114204914 114205019 -41425101 + MIR SINE MIR 19 131 -131 2 1456 261 0 0 0 chr4 114205095 114205124 -41424996 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2 1456 439 222 17 17 chr4 114205138 114205257 -41424863 - MER2 DNA MER2_type -53 292 174 2 1456 251 239 147 15 chr4 114205349 114205417 -41424703 + BC1_Mm scRNA scRNA 12 88 -64 2 1456 200 116 70 0 chr4 114206215 114206258 -41423862 + (TTAAA)n Simple_repeat Simple_repeat 3 48 0 3 1456 330 26 0 0 chr4 114206393 114206432 -41423688 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 3 1456 950 326 57 42 chr4 114207480 114207864 -41422256 - MLT1B LTR MaLR 0 390 1 3 1456 212 317 16 16 chr4 114209356 114209417 -41420703 - L2b LINE L2 -22 3353 3293 3 1456 234 294 14 29 chr4 114210625 114210695 -41419425 - MIR SINE MIR -12 250 182 3 1456 276 218 0 0 chr4 114210980 114211035 -41419085 + MIRc SINE MIR 78 132 -136 3 1456 381 293 122 68 chr4 114212522 114212859 -41417261 + L2 LINE L2 2409 2763 -656 3 1456 323 292 29 121 chr4 114213010 114213283 -41416837 + L2 LINE L2 2820 3067 -352 3 1456 218 136 136 0 chr4 114215285 114215329 -41414791 + L2b LINE L2 3325 3374 -1 3 1456 243 0 0 0 chr4 114216183 114216210 -41413910 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1456 408 296 9 0 chr4 114216897 114217005 -41413115 + PB1D10 SINE Alu 1 109 -8 3 1456 208 333 12 36 chr4 114217709 114217793 -41412327 + MIR SINE MIR 132 213 -49 3 1456 1272 255 40 34 chr4 114218542 114218867 -41411253 + MLT1A0 LTR MaLR 14 340 -25 3 1456 758 259 189 7 chr4 114218875 114219389 -41410731 - L1M4 LINE L1 -4656 2084 1324 3 1456 444 294 99 24 chr4 114219528 114219710 -41410410 - B3 SINE B2 -9 207 6 3 1456 1087 284 314 22 chr4 114219719 114220663 -41409457 - L1M4 LINE L1 -5305 1237 19 3 1456 3445 34 2 2 chr4 114221346 114221754 -41408366 - L1Md_F3 LINE L1 0 6584 6177 3 1456 1304 194 173 25 chr4 114222089 114222454 -41407666 - MTD LTR MaLR 0 419 1 3 1456 253 312 23 15 chr4 114222754 114222856 -41407264 + L2a LINE L2 3290 3426 0 3 1456 180 291 36 0 chr4 114223136 114223191 -41406929 - MIR3 SINE MIR -25 183 127 3 1456 259 265 132 63 chr4 114224146 114224344 -41405776 - MIRm SINE MIR -31 237 17 3 1456 22 0 0 0 chr4 114224415 114224437 -41405683 + AT_rich Low_complexity Low_complexity 1 22 0 3 1456 375 289 137 66 chr4 114224491 114224732 -41405388 - B4 SINE B4 -34 258 1 3 1456 721 262 0 0 chr4 114224945 114225090 -41405030 - RSINE1 SINE B4 -15 150 6 3 1456 486 0 0 0 chr4 114225109 114225163 -41404957 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1456 2334 219 106 22 chr4 114225163 114225874 -41404246 - L1MA6 LINE L1 -144 6156 5387 3 1456 595 261 44 13 chr4 114226107 114226202 -41403918 - RLTR20D LTR ERVK 0 568 468 3 1456 180 0 0 0 chr4 114226202 114226222 -41403898 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1456 595 261 44 13 chr4 114226222 114226285 -41403835 - RLTR20D LTR ERVK -101 467 406 3 1456 413 294 77 54 chr4 114226289 114226508 -41403612 - RLTR20D LTR ERVK -322 246 1 3 1456 25 0 0 0 chr4 114228196 114228221 -41401899 + AT_rich Low_complexity Low_complexity 1 25 0 3 1456 336 233 67 0 chr4 114229110 114229200 -41400920 - B4 SINE B4 -112 180 85 3 1456 197 261 49 89 chr4 114229967 114230109 -41400011 + MIR SINE MIR 34 173 -95 3 1456 2288 229 61 15 chr4 114232425 114232550 -41397570 - RCHARR1 DNA MER1_type 0 974 852 3 1456 1028 206 9 23 chr4 114232550 114232769 -41397351 - B3 SINE B2 0 216 1 3 1456 2288 229 61 15 chr4 114232769 114233247 -41396873 - RCHARR1 DNA MER1_type -123 851 343 3 1456 270 56 0 0 chr4 114233248 114233284 -41396836 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1456 210 316 16 0 chr4 114234388 114234460 -41395660 + MIR SINE MIR 78 157 -119 3 1456 316 243 136 0 chr4 114235878 114235981 -41394139 + PB1D10 SINE Alu 1 117 0 3 1456 740 184 215 31 chr4 114236045 114236236 -41393884 - URR1A DNA MER1_type 0 226 1 3 1456 273 291 107 60 chr4 114237663 114237831 -41392289 + MIR SINE MIR 66 241 -21 3 1456 212 369 68 58 chr4 114237898 114238105 -41392015 - L2b LINE L2 -168 3207 2999 3 1456 184 306 0 20 chr4 114241727 114241777 -41388343 + MIRc SINE MIR 112 160 -108 3 1456 289 306 56 0 chr4 114242807 114242915 -41387205 + Charlie5 DNA MER1_type 2304 2417 -207 3 1456 758 313 9 9 chr4 114242936 114243165 -41386955 + B4A SINE B4 2 230 -62 3 1456 597 28 0 0 chr4 114243236 114243307 -41386813 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1456 619 151 42 25 chr4 114243312 114243598 -41386522 + (CA)n Simple_repeat Simple_repeat 1 291 0 3 1456 193 380 26 20 chr4 114243623 114243776 -41386344 + L2a LINE L2 3265 3418 -8 3 1456 188 333 90 40 chr4 114243780 114243880 -41386240 - MIR SINE MIR -64 144 40 3 1456 225 379 24 24 chr4 114244753 114244880 -41385240 + MIRb SINE MIR 53 179 -89 3 1456 570 292 100 31 chr4 114245582 114245872 -41384248 - MLT2C1 LTR ERVL -48 349 40 3 1456 505 297 89 18 chr4 114245886 114246277 -41383843 + L1MA6 LINE L1 4938 5356 -787 3 1456 495 145 0 0 chr4 114246285 114246368 -41383752 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 3 1456 942 79 0 0 chr4 114246372 114246499 -41383621 + B1_Mur4 SINE Alu 18 144 -6 3 1456 1513 265 51 13 chr4 114246516 114247044 -41383076 + L1MA6 LINE L1 5386 5933 -367 3 1456 247 208 83 0 chr4 114247421 114247493 -41382627 - MLT2C1 LTR ERVL -474 82 5 3 1456 738 313 58 29 chr4 114247495 114247840 -41382280 - ERVL-int LTR ERVL -1 5756 5402 3 1456 924 243 5 0 chr4 114247853 114248038 -41382082 + ID_B1 SINE B4 26 211 -13 3 1456 805 307 63 10 chr4 114248038 114248478 -41381642 - ERVL-int LTR ERVL -371 5343 4883 3 1456 1058 125 0 6 chr4 114249357 114249534 -41380586 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 3 1456 368 270 45 0 chr4 114252228 114252339 -41377781 + PB1D10 SINE Alu 2 117 0 3 1456 280 298 22 28 chr4 114253185 114253318 -41376802 - MIRb SINE MIR -98 164 44 3 1456 527 336 68 60 chr4 114254008 114254391 -41375729 + L2a LINE L2 3040 3425 -1 3 1456 225 362 131 6 chr4 114256971 114257146 -41372974 - MIRb SINE MIR -44 224 28 3 1456 214 186 119 0 chr4 114257511 114257570 -41372550 - MER91C DNA Tip100 0 140 75 3 1456 216 0 0 0 chr4 114257773 114257797 -41372323 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1456 197 329 68 93 chr4 114258533 114258694 -41371426 - MIRc SINE MIR -46 162 6 3 1456 228 298 175 16 chr4 114258811 114258937 -41371183 + MIRb SINE MIR 46 191 -77 3 1456 213 308 125 44 chr4 114259229 114259365 -41370755 - MIRc SINE MIR -101 167 21 3 1456 491 271 64 0 chr4 114260097 114260237 -41369883 + B1_Mur1 SINE Alu 1 149 0 3 1456 252 59 0 0 chr4 114262888 114262922 -41367198 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 1456 408 40 0 0 chr4 114263257 114263307 -41366813 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 3 1456 1916 162 57 19 chr4 114264783 114265155 -41364965 - ORR1B1 LTR MaLR -8 386 1 3 1456 201 200 100 0 chr4 114265541 114265601 -41364519 + MIR SINE MIR 36 101 -161 3 1456 429 225 148 20 chr4 114266858 114267039 -41363081 + MIRc SINE MIR 27 234 -34 3 1456 223 320 91 0 chr4 114267056 114267199 -41362921 - MIR SINE MIR -6 202 40 3 1456 348 235 28 101 chr4 114268277 114268386 -41361734 - L2c LINE L2 0 3387 3287 3 1456 1453 216 99 35 chr4 114269737 114270131 -41359989 - MTD LTR MaLR 0 419 1 3 1456 229 220 0 35 chr4 114270619 114270704 -41359416 + GA-rich Low_complexity Low_complexity 2 83 0 3 1456 192 380 0 0 chr4 114271566 114271637 -41358483 + L2c LINE L2 3317 3387 0 3 1456 453 36 0 0 chr4 114271662 114271717 -41358403 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1456 254 207 79 147 chr4 114272120 114272259 -41357861 - MIR SINE MIR -84 192 44 3 1456 432 300 62 6 chr4 114274763 114274924 -41355196 - MIR SINE MIR -19 243 74 3 1456 242 280 13 51 chr4 114275885 114275964 -41354156 + PB1D10 SINE Alu 42 117 0 3 1456 248 296 14 14 chr4 114275970 114276042 -41354078 + ID4_ SINE ID 5 76 -7 3 1456 187 261 87 0 chr4 114278080 114278126 -41351994 - MIRc SINE MIR -188 80 31 3 1456 711 71 0 0 chr4 114278757 114278855 -41351265 + (TG)n Simple_repeat Simple_repeat 2 99 0 3 1456 265 328 88 37 chr4 114280379 114280515 -41349605 - MIR3 SINE MIR -27 181 39 3 1456 199 269 93 28 chr4 114280801 114280908 -41349212 - L3 LINE CR1 -3520 969 856 3 1456 234 0 0 0 chr4 114281047 114281073 -41349047 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1456 683 135 0 8 chr4 114281073 114281207 -41348913 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1456 573 15 0 0 chr4 114282176 114282242 -41347878 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1456 630 26 0 0 chr4 114283270 114283346 -41346774 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 3 1456 237 266 16 0 chr4 114283462 114283526 -41346594 - MIR SINE MIR -72 136 72 3 1456 533 296 46 41 chr4 114284506 114284703 -41345417 - MER121 Unknown Unknown -65 347 150 3 1456 232 238 15 31 chr4 114284782 114284847 -41345273 - L2b LINE L2 -24 3351 3288 3 1456 451 312 0 28 chr4 114285088 114285233 -41344887 + B1F1 SINE Alu 2 142 -7 3 1456 457 143 10 20 chr4 114285243 114285343 -41344777 + GA-rich Low_complexity Low_complexity 1 99 0 3 1456 198 0 0 0 chr4 114286024 114286046 -41344074 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1456 181 214 24 0 chr4 114287144 114287186 -41342934 + MIRb SINE MIR 97 139 -129 3 1456 212 269 55 55 chr4 114288114 114288224 -41341896 + L2 LINE L2 2753 2862 -557 3 1456 921 238 36 5 chr4 114288860 114288934 -41341186 + B4 SINE B4 2 74 -218 3 1456 194 0 39 0 chr4 114288934 114288960 -41341160 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1456 921 238 36 5 chr4 114288960 114289079 -41341041 + B4 SINE B4 75 200 -92 3 1456 231 189 273 24 chr4 114289184 114289310 -41340810 - MIR SINE MIR -109 167 2 3 1456 206 350 0 70 chr4 114289320 114289406 -41340714 - MIRc SINE MIR -89 179 100 3 1456 190 143 29 0 chr4 114289445 114289480 -41340640 - L3 LINE CR1 -3323 1166 1131 3 1456 196 261 92 0 chr4 114289886 114289951 -41340169 + L3 LINE CR1 4228 4298 -191 3 1456 356 352 106 48 chr4 114290530 114290860 -41339260 - ORR1E LTR MaLR -9 361 1 3 1456 379 52 17 17 chr4 114291361 114291420 -41338700 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1456 215 184 14 56 chr4 114291419 114291563 -41338557 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 1456 253 176 22 61 chr4 114291537 114291718 -41338402 + (TATATG)n Simple_repeat Simple_repeat 4 177 0 4 1456 212 239 44 57 chr4 114292353 114292481 -41337639 + MIR SINE MIR 37 159 -109 4 1456 207 0 0 0 chr4 114292578 114292601 -41337519 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1456 405 81 0 0 chr4 114293106 114293168 -41336952 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1456 248 262 66 0 chr4 114294308 114294369 -41335751 + ID4 SINE ID 3 67 -16 4 22 546 351 81 39 chr4 114294515 114294990 -41335130 + MER20B DNA MER1_type 90 589 -194 4 1457 949 137 6 6 chr4 114294990 114295159 -41334961 + (TCC)n Simple_repeat Simple_repeat 1 169 0 4 1457 546 351 81 39 chr4 114295159 114295201 -41334919 + MER20B DNA MER1_type 590 628 -155 4 1457 516 194 86 80 chr4 114295174 114295325 -41334795 + RMER10B LTR ERVL 201 352 -46 4 1457 310 268 88 38 chr4 114295341 114295500 -41334620 + MER20B DNA MER1_type 575 741 -42 4 1457 212 353 35 0 chr4 114296022 114296107 -41334013 + MIR3 SINE MIR 114 201 -7 4 1457 322 327 59 31 chr4 114298261 114298437 -41331683 + MIRb SINE MIR 25 199 -77 4 1457 252 325 98 40 chr4 114298380 114298553 -41331567 - MIRb SINE MIR 0 262 80 4 1457 28 29 0 0 chr4 114299463 114299498 -41330622 + AT_rich Low_complexity Low_complexity 1 35 0 4 1457 609 215 0 8 chr4 114299511 114299642 -41330478 + Lx5 LINE L1 6921 7050 0 4 1457 233 321 68 43 chr4 114299804 114299921 -41330199 - MIRb SINE MIR -71 197 78 4 1457 223 322 127 18 chr4 114300002 114300277 -41329843 + L2a LINE L2 2951 3255 -171 4 1457 1452 152 7 22 chr4 114301157 114301178 -41328942 - L1_Mur2 LINE L1 -511 5366 5347 4 1457 4195 148 5 3 chr4 114301178 114301847 -41328273 - Lx LINE L1 -12 6642 5973 4 1457 1452 152 7 22 chr4 114301847 114302100 -41328020 - L1_Mur2 LINE L1 -531 5346 5096 4 1457 3154 152 51 3 chr4 114302106 114302699 -41327421 - L1_Mur2 LINE L1 -1739 4138 3518 4 1457 326 277 21 55 chr4 114302844 114302989 -41327131 - RLTR42-int LTR ERVK -4122 1400 1261 4 1457 1332 122 16 0 chr4 114303008 114303196 -41326924 + B2_Mm2 SINE B2 1 191 -4 4 1457 186 122 48 24 chr4 114305752 114305794 -41324326 + MIRc SINE MIR 2 44 -224 4 1457 322 265 182 98 chr4 114306475 114306881 -41323239 + L1ME2 LINE L1 5664 6103 -61 4 1457 333 68 0 0 chr4 114310107 114310151 -41319969 + (GGA)n Simple_repeat Simple_repeat 2 45 0 4 1457 1110 130 0 0 chr4 114310184 114310361 -41319759 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 4 1457 7411 74 24 15 chr4 114310475 114311546 -41318574 + L1_Mus3 LINE L1 5554 6630 -8 4 1457 1979 298 97 39 chr4 114311554 114312458 -41317662 + Lx8 LINE L1 6180 7136 -337 4 1457 231 231 15 15 chr4 114312659 114312725 -41317395 + GA-rich Low_complexity Low_complexity 2 67 0 4 1457 802 145 25 0 chr4 114313018 114313177 -41316943 + GA-rich Low_complexity Low_complexity 2 164 0 4 1457 281 127 36 0 chr4 114313266 114313321 -41316799 + GA-rich Low_complexity Low_complexity 1 57 0 4 1457 519 351 87 12 chr4 114313367 114314102 -41316018 + L1M5 LINE L1 4383 5172 -974 4 1457 350 333 66 36 chr4 114314360 114314724 -41315396 + L1MC LINE L1 5363 5737 -2145 4 1457 2267 146 86 3 chr4 114315298 114315682 -41314438 - MTC LTR MaLR -5 416 1 4 1457 325 196 54 0 chr4 114315728 114315784 -41314336 + L1MEg LINE L1 1874 1932 -4152 4 1457 215 255 0 47 chr4 114316387 114316494 -41313626 + (CAGC)n Simple_repeat Simple_repeat 2 103 0 4 1457 665 251 85 25 chr4 114317097 114317297 -41312823 - ID_B1 SINE B4 -11 213 2 4 1457 1088 190 33 33 chr4 114317308 114317520 -41312600 - B4 SINE B4 -79 213 2 4 1457 347 263 42 78 chr4 114317879 114318018 -41312102 - MLT1H1 LTR MaLR -355 194 54 4 1457 324 336 31 0 chr4 114318145 114318273 -41311847 - MIRb SINE MIR -16 252 121 4 1457 212 326 34 88 chr4 114319164 114319312 -41310808 + MIRb SINE MIR 42 181 -87 4 1457 201 375 34 0 chr4 114320135 114320223 -41309897 + MIR SINE MIR 13 103 -159 4 1457 187 216 217 43 chr4 114320840 114320932 -41309188 - MIRb SINE MIR -138 130 23 4 1457 306 0 0 0 chr4 114321789 114321823 -41308297 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1457 225 345 96 27 chr4 114322316 114322462 -41307658 - MIRb SINE MIR -107 161 6 4 1457 360 299 53 40 chr4 114324279 114324429 -41305691 - MIRc SINE MIR -60 208 57 4 1457 233 242 79 16 chr4 114324628 114324691 -41305429 + L2b LINE L2 3307 3373 -2 4 1457 764 217 32 13 chr4 114324875 114325029 -41305091 + ORR1E LTR MaLR 5 161 -198 4 1457 755 162 26 33 chr4 114325022 114325175 -41304945 + URR1A DNA MER1_type 74 225 -1 4 1457 361 195 0 65 chr4 114325177 114325270 -41304850 + ORR1E LTR MaLR 151 237 -122 4 1457 223 280 40 0 chr4 114325271 114325346 -41304774 - MIR SINE MIR -97 165 88 4 1457 757 238 13 19 chr4 114325363 114325517 -41304603 + RSINE1 SINE B4 3 155 -10 4 1457 413 262 0 0 chr4 114325806 114325884 -41304236 + B1_Mus2 SINE Alu 1 78 -69 4 1457 1748 156 101 18 chr4 114325884 114326211 -41303909 + ORR1B2 LTR MaLR 1 354 -13 4 1457 14633 4 0 0 chr4 114326211 114327906 -41302214 + L1Md_A LINE L1 3892 5586 -297 4 1457 9206 3 0 0 chr4 114327906 114328902 -41301218 + L1Md_A LINE L1 5587 6582 0 4 1457 388 180 0 0 chr4 114328962 114329023 -41301097 + B1_Mur1 SINE Alu 76 136 -13 4 1457 579 257 86 45 chr4 114329434 114329748 -41300372 + L1MA6 LINE L1 5966 6294 -9 4 1457 235 321 142 7 chr4 114329970 114330111 -41300009 - MIRc SINE MIR -98 170 11 4 1457 980 305 129 49 chr4 114330194 114330666 -41299454 - MLT1E2 LTR MaLR -4 623 114 4 1457 420 333 42 0 chr4 114331510 114331678 -41298442 - MLT1N2 LTR MaLR -12 550 376 4 1457 270 0 0 0 chr4 114332903 114332933 -41297187 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1457 26 50 0 0 chr4 114333148 114333188 -41296932 + AT_rich Low_complexity Low_complexity 1 40 0 4 1457 255 31 0 0 chr4 114333253 114333285 -41296835 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1457 402 262 31 80 chr4 114333575 114333738 -41296382 - MIRb SINE MIR -84 184 31 4 1457 476 102 0 22 chr4 114334171 114334261 -41295859 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 4 1457 1306 177 80 33 chr4 114334300 114334593 -41295527 - MTC LTR MaLR -40 381 66 4 1457 672 48 0 0 chr4 114334593 114334676 -41295444 - L1_Mus1 LINE L1 -299 6267 6185 4 1457 1932 40 0 0 chr4 114334676 114334902 -41295218 + L1_Mus1 LINE L1 6342 6567 0 4 1457 474 178 162 38 chr4 114334913 114335018 -41295102 - MTC LTR MaLR -301 120 3 4 1457 185 250 0 51 chr4 114335148 114335207 -41294913 + L3 LINE CR1 1892 1947 -2542 4 1457 580 217 144 19 chr4 114335182 114335342 -41294778 + MIRb SINE MIR 18 197 -71 4 1457 269 169 48 0 chr4 114335506 114335589 -41294531 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 1457 518 164 34 14 chr4 114335606 114335754 -41294366 + (TG)n Simple_repeat Simple_repeat 2 152 0 4 1457 821 110 312 6 chr4 114336363 114336460 -41293660 + URR1A DNA MER1_type 1 138 -88 4 1457 183 42 0 0 chr4 114336460 114336484 -41293636 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1457 821 110 312 6 chr4 114336484 114336559 -41293561 + URR1A DNA MER1_type 139 225 -1 4 1457 845 234 31 37 chr4 114337013 114337087 -41293033 - B3A SINE B2 -8 190 120 4 1457 1078 140 113 57 chr4 114337087 114337299 -41292821 - URR1A DNA MER1_type -1 225 2 4 1457 845 234 31 37 chr4 114337299 114337415 -41292705 - B3A SINE B2 -79 119 1 4 1457 495 0 0 0 chr4 114337589 114337644 -41292476 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1457 288 154 0 0 chr4 114340292 114340344 -41289776 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1457 351 0 0 0 chr4 114340773 114340812 -41289308 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 4 1457 747 0 0 0 chr4 114340814 114340897 -41289223 + (TCTCCC)n Simple_repeat Simple_repeat 3 85 0 4 1457 228 274 68 0 chr4 114341257 114341330 -41288790 - ID4_ SINE ID -4 79 2 4 1457 306 0 0 0 chr4 114342181 114342215 -41287905 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1457 374 39 19 0 chr4 114342385 114342437 -41287683 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1457 801 59 29 22 chr4 114342722 114342861 -41287259 + (GGGA)n Simple_repeat Simple_repeat 2 141 0 4 1457 298 355 81 50 chr4 114343659 114343791 -41286329 + MLT1A0 LTR MaLR 10 151 -214 4 1457 634 276 13 7 chr4 114343791 114343944 -41286176 + RSINE1 SINE B4 3 156 -9 4 1457 298 355 81 50 chr4 114343944 114344131 -41285989 + MLT1A0 LTR MaLR 152 339 -26 4 1457 210 294 99 66 chr4 114344347 114344438 -41285682 - MIR SINE MIR -141 121 28 4 1457 417 319 85 6 chr4 114346854 114347018 -41283102 - L2a LINE L2 -2 3424 3248 4 1457 509 229 44 37 chr4 114347048 114347184 -41282936 + B1F SINE Alu 13 149 0 4 1457 284 275 14 0 chr4 114347185 114347254 -41282866 + ID4_ SINE ID 3 72 -11 4 1457 230 143 20 0 chr4 114348197 114348246 -41281874 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 4 1457 221 308 0 90 chr4 114349300 114349400 -41280720 - MIRc SINE MIR -42 226 136 4 1457 182 288 131 33 chr4 114349654 114349776 -41280344 + MIR3 SINE MIR 47 180 -28 4 1457 570 262 15 15 chr4 114351563 114351695 -41278425 + RSINE1 SINE B4 3 134 -31 4 1457 337 228 9 98 chr4 114351709 114351821 -41278299 + HAL1-2a_MD LINE L1 2341 2442 -582 4 1457 241 353 34 8 chr4 114353765 114353882 -41276238 - PB1D7 SINE Alu 0 120 1 4 1457 221 277 93 8 chr4 114354645 114354745 -41275375 - MIRc SINE MIR -24 184 82 4 1457 26 0 0 0 chr4 114355359 114355385 -41274735 + AT_rich Low_complexity Low_complexity 1 26 0 4 1457 396 0 0 0 chr4 114356406 114356450 -41273670 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1457 570 203 179 0 chr4 114356847 114356970 -41273150 - B1_Mur2 SINE Alu 0 149 5 4 1457 378 0 0 0 chr4 114358660 114358702 -41271418 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1457 441 0 0 0 chr4 114358702 114358750 -41271370 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1457 258 56 0 0 chr4 114360296 114360332 -41269788 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1457 225 94 0 0 chr4 114360583 114360615 -41269505 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1457 292 284 75 19 chr4 114361623 114361748 -41268372 - MIR3 SINE MIR -70 206 76 5 1457 721 264 0 55 chr4 114361954 114362118 -41268002 + RSINE1 SINE B4 11 165 0 5 1457 265 302 58 0 chr4 114362463 114362549 -41267571 - L3 LINE CR1 -5 4484 4394 5 1457 459 0 0 0 chr4 114362900 114362951 -41267169 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1457 452 263 11 0 chr4 114363030 114363125 -41266995 - MIRb SINE MIR -8 260 165 5 1457 441 273 24 7 chr4 114363157 114363287 -41266833 - MIRb SINE MIR -8 260 127 5 1457 293 210 85 12 chr4 114363834 114363916 -41266204 - MTEa LTR MaLR -3 376 289 5 1457 201 139 0 0 chr4 114363972 114364015 -41266105 + (ATG)n Simple_repeat Simple_repeat 1 43 0 5 1457 288 53 0 0 chr4 114365191 114365229 -41264891 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 5 1457 1157 268 56 10 chr4 114366665 114366970 -41263150 + ORR1E LTR MaLR 5 323 -36 5 1457 237 65 0 0 chr4 114366970 114367001 -41263119 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1457 967 238 145 55 chr4 114367027 114367352 -41262768 - MTEa LTR MaLR -24 355 2 5 1457 619 303 121 5 chr4 114367624 114367823 -41262297 + B4A SINE B4 57 278 -14 5 1457 198 118 0 0 chr4 114367871 114367905 -41262215 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1457 211 108 0 75 chr4 114368219 114368299 -41261821 + A-rich Low_complexity Low_complexity 2 75 0 5 1457 251 295 0 0 chr4 114368645 114368706 -41261414 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 5 1457 1017 331 62 72 chr4 114368914 114369542 -41260578 + L1MEg LINE L1 1021 1642 -4773 5 1457 297 0 0 0 chr4 114369576 114369609 -41260511 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1457 194 62 31 0 chr4 114369609 114369641 -41260479 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1457 303 234 0 0 chr4 114369693 114369770 -41260350 + CT-rich Low_complexity Low_complexity 3 79 0 5 1457 697 314 76 19 chr4 114370077 114370392 -41259728 + Lx8 LINE L1 6989 7321 -152 5 1457 243 0 0 0 chr4 114370927 114370954 -41259166 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1457 495 212 29 57 chr4 114370954 114371089 -41259031 - B1_Mur4 SINE Alu -1 149 19 5 1457 1481 74 15 0 chr4 114371271 114371473 -41258647 + L1Md_F2 LINE L1 6355 6559 -23 5 1457 186 43 0 0 chr4 114371474 114371497 -41258623 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 1457 380 329 47 59 chr4 114371622 114371959 -41258161 + L1MEg LINE L1 1981 2367 -4033 5 1457 505 248 178 15 chr4 114371960 114372095 -41258025 + RSINE1 SINE B4 9 165 0 5 1457 444 118 0 0 chr4 114372446 114372514 -41257606 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 5 1457 990 339 97 21 chr4 114372532 114373757 -41256363 + L1MEg LINE L1 4644 5952 -394 5 1457 537 16 0 0 chr4 114373784 114373846 -41256274 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1457 278 209 30 0 chr4 114374145 114374212 -41255908 - L1MA4 LINE L1 -410 5890 5822 5 1457 594 313 93 11 chr4 114374212 114374577 -41255543 + L1MA5 LINE L1 5895 6289 -11 5 1457 381 208 19 19 chr4 114374577 114374685 -41255435 + L1MA5 LINE L1 6170 6277 -23 5 1457 212 244 0 0 chr4 114374930 114374971 -41255149 + PB1D10 SINE Alu 51 91 -26 5 1457 204 404 41 7 chr4 114374971 114375118 -41255002 + MIR3 SINE MIR 22 173 -35 5 1457 303 319 70 14 chr4 114375358 114375501 -41254619 + MIRc SINE MIR 114 264 -4 5 1457 1177 93 6 0 chr4 114377102 114377264 -41252856 + B2_Mm2 SINE B2 2 164 -31 5 1457 363 44 0 0 chr4 114377264 114377309 -41252811 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1457 339 25 0 0 chr4 114377538 114377578 -41252542 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1457 312 329 93 47 chr4 114378521 114378757 -41251363 - MIRb SINE MIR 0 268 22 5 1457 201 287 28 65 chr4 114379017 114379125 -41250995 - L2c LINE L2 -193 3194 3091 5 1457 257 314 78 7 chr4 114379537 114379678 -41250442 + MIRb SINE MIR 117 267 -1 5 1457 943 229 259 4 chr4 114380869 114381101 -41249019 + B4 SINE B4 1 291 -1 5 1457 272 352 0 0 chr4 114381102 114381190 -41248930 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1457 201 74 0 0 chr4 114381355 114381382 -41248738 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 5 1457 234 208 0 0 chr4 114381643 114381696 -41248424 + T-rich Low_complexity Low_complexity 1 53 0 5 1457 645 293 146 26 chr4 114383605 114384022 -41246098 + MLT1C LTR MaLR 1 467 0 5 1457 962 273 97 30 chr4 114384197 114384465 -41245655 - B4A SINE B4 0 292 7 5 1457 579 255 35 7 chr4 114386973 114387115 -41243005 + RSINE1 SINE B4 3 148 -17 5 1457 1122 150 120 0 chr4 114388242 114388442 -41241678 - URR1A DNA MER1_type -2 224 1 5 1457 322 309 60 52 chr4 114389808 114389924 -41240196 - MIRm SINE MIR 0 276 160 5 1457 1148 161 102 0 chr4 114389924 114390129 -41239991 - URR1A DNA MER1_type 0 226 1 5 1457 1621 187 39 19 chr4 114390615 114391131 -41238989 + RMER19B LTR ERVK 97 902 0 5 1457 185 322 120 17 chr4 114395375 114395492 -41234628 + L2c LINE L2 3031 3159 -228 5 1457 369 0 0 0 chr4 114396908 114396949 -41233171 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 5 1457 6935 156 95 4 chr4 114397329 114398641 -41231479 - Lx2B LINE L1 -20 6980 5550 5 1457 663 37 0 0 chr4 114398698 114398780 -41231340 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1457 208 306 33 66 chr4 114399269 114399360 -41230760 + MIR SINE MIR 51 138 -130 5 1457 247 264 28 0 chr4 114399797 114399869 -41230251 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1457 395 321 126 49 chr4 114399899 114400122 -41229998 - B4 SINE B4 -51 241 2 5 1457 807 200 109 0 chr4 114403235 114403410 -41226710 - ORR1D2 LTR MaLR 0 370 177 5 1457 1701 214 70 61 chr4 114403404 114403847 -41226273 - ORR1D2-int LTR MaLR -411 959 513 5 1457 357 131 0 0 chr4 114403847 114403908 -41226212 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1457 1471 244 16 22 chr4 114403935 114404254 -41225866 - Lx7 LINE L1 -961 6735 6419 5 1457 2197 261 26 20 chr4 114404276 114404815 -41225305 - ORR1D2-int LTR MaLR -828 542 1 5 1457 767 272 128 39 chr4 114404816 114405152 -41224968 - ORR1D2 LTR MaLR 0 370 5 5 1457 405 0 0 0 chr4 114405359 114405404 -41224716 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1457 214 324 29 0 chr4 114405806 114405874 -41224246 - MIRm SINE MIR -22 254 185 5 1457 193 271 51 0 chr4 114407404 114407463 -41222657 + MIR SINE MIR 57 118 -90 5 1457 726 209 127 123 chr4 114407950 114408266 -41221854 - Lx7 LINE L1 -219 7477 7161 5 1457 364 277 219 4 chr4 114409108 114409387 -41220733 - L2 LINE L2 -518 2901 2563 5 1457 376 261 42 25 chr4 114409606 114409724 -41220396 + MIR SINE MIR 13 132 -130 5 1457 216 297 46 15 chr4 114411137 114411202 -41218918 + MIR3 SINE MIR 107 173 -35 5 1457 324 239 0 27 chr4 114411377 114411450 -41218670 + RLTR25A LTR ERVK 518 588 -515 5 1457 703 115 0 0 chr4 114411386 114411482 -41218638 + B1_Mus2 SINE Alu 51 146 -1 5 1457 450 0 0 0 chr4 114411482 114411532 -41218588 + (GGA)n Simple_repeat Simple_repeat 3 52 0 5 1457 1369 280 33 25 chr4 114413306 114413717 -41216403 - MTE2b LTR MaLR -5 414 2 5 1457 3013 157 18 73 chr4 114413747 114414182 -41215938 + RMER15 LTR ERVL 6 435 -140 5 1457 722 184 88 0 chr4 114414182 114414318 -41215802 + B1_Mur4 SINE Alu 3 150 0 5 1457 3013 157 18 73 chr4 114414318 114414485 -41215635 + RMER15 LTR ERVL 436 575 0 5 1457 351 0 0 0 chr4 114414869 114414908 -41215212 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1457 385 338 123 25 chr4 114414941 114415014 -41215106 + L2b LINE L2 2563 2640 -779 5 1457 180 0 0 0 chr4 114415014 114415034 -41215086 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1457 385 338 123 25 chr4 114415034 114415430 -41214690 + L2b LINE L2 2641 3078 -341 5 1457 204 245 0 0 chr4 114415662 114415715 -41214405 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 5 1457 563 0 15 0 chr4 114416315 114416382 -41213738 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1457 227 200 0 0 chr4 114416789 114416824 -41213296 - MLT2B5 LTR ERVL -436 165 131 5 1457 201 361 0 0 chr4 114416824 114416885 -41213235 + L2b LINE L2 3295 3355 -20 5 1457 282 311 117 58 chr4 114416944 114417149 -41212971 - MIR SINE MIR 0 262 46 5 1457 186 339 98 82 chr4 114417170 114417414 -41212706 - L2b LINE L2 -3 3372 3125 5 1457 2439 36 57 22 chr4 114418070 114418384 -41211736 - L1Md_F2 LINE L1 -1 6581 6257 5 1457 482 284 9 9 chr4 114418534 114418644 -41211476 + RSINE1 SINE B4 34 143 -22 5 1457 216 0 0 0 chr4 114418674 114418698 -41211422 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1457 378 0 0 0 chr4 114418698 114418739 -41211381 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1457 1647 209 20 84 chr4 114418967 114419370 -41210750 - ORR1C2 LTR MaLR 0 384 8 5 1457 427 358 0 0 chr4 114419350 114419487 -41210633 - MTE2b LTR MaLR -242 137 1 5 1457 244 322 17 34 chr4 114419504 114419623 -41210497 - L1MC LINE L1 -2369 5513 5397 5 1457 937 312 77 35 chr4 114419626 114420509 -41209611 - L1MC4 LINE L1 -785 5429 4510 5 1457 518 153 12 30 chr4 114420718 114420886 -41209234 + (TG)n Simple_repeat Simple_repeat 2 166 0 5 1457 441 272 99 139 chr4 114420912 114420998 -41209122 - B4A SINE B4 0 292 227 5 1457 760 263 35 45 chr4 114420998 114421197 -41208923 - B3A SINE B2 0 198 2 5 1457 441 272 99 139 chr4 114421197 114421413 -41208707 - B4A SINE B4 -66 226 2 5 1457 430 311 13 32 chr4 114421981 114422137 -41207983 - RSINE1 SINE B4 -10 155 3 5 1457 347 313 390 31 chr4 114422406 114422800 -41207320 + MLT1F1 LTR MaLR 29 567 -2 5 1457 404 241 110 92 chr4 114423008 114423236 -41206884 - L1MC4 LINE L1 -3964 2251 2020 5 1457 1813 212 60 25 chr4 114423371 114423768 -41206352 - MTD LTR MaLR -8 411 1 5 1457 809 304 96 36 chr4 114423770 114424268 -41205852 - MT2A LTR ERVL -3 530 3 5 1457 300 274 242 47 chr4 114424510 114425018 -41205102 - L1MC4 LINE L1 -4651 1660 1054 5 1457 2407 36 0 0 chr4 114425180 114425459 -41204661 - L1Md_A LINE L1 -2 6580 6302 5 1457 247 336 76 7 chr4 114425693 114425837 -41204283 - L1MC4 LINE L1 -5725 586 433 5 1458 3462 78 0 0 chr4 114425933 114426370 -41203750 - Lx3_Mus LINE L1 -185 5701 5265 5 1458 2518 70 6 0 chr4 114426368 114426695 -41203425 + Lx3_Mus LINE L1 5725 6053 -956 5 1458 367 301 101 109 chr4 114426869 114427211 -41202909 - ORR1E LTR MaLR -13 361 34 5 1458 938 296 107 79 chr4 114427430 114428138 -41201982 - L1MEe LINE L1 -3845 1009 282 6 1458 3172 199 42 7 chr4 114429238 114429850 -41200270 - Lx5 LINE L1 -1 7049 6416 6 1458 10427 135 28 29 chr4 114429852 114431667 -41198453 - L1_Mur2 LINE L1 -296 5581 3769 6 1458 183 333 72 27 chr4 114432904 114433015 -41197105 - MIRb SINE MIR -112 156 41 6 1458 378 0 0 0 chr4 114433434 114433476 -41196644 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1458 5566 109 7 16 chr4 114433496 114434869 -41195251 + L1Md_F3 LINE L1 413 1770 -4113 6 1458 858 46 0 0 chr4 114434866 114434975 -41195145 - L1Md_F3 LINE L1 -2990 2893 2785 6 1458 21632 58 2 0 chr4 114434976 114437686 -41192434 + L1Md_F3 LINE L1 2872 5586 -297 6 1458 8485 37 2 1 chr4 114437686 114438683 -41191437 + L1Md_F3 LINE L1 5587 6584 0 6 1458 291 154 0 0 chr4 114438946 114439011 -41191109 + (CTGGGG)n Simple_repeat Simple_repeat 4 68 0 6 1458 206 337 9 73 chr4 114439049 114439158 -41190962 - MIRb SINE MIR -166 102 1 6 1458 297 0 0 0 chr4 114440690 114440723 -41189397 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1458 297 0 0 0 chr4 114440723 114440755 -41189365 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1458 675 181 116 35 chr4 114441874 114442046 -41188074 - RMER13B LTR ERVK 0 908 723 6 1458 3644 122 66 2 chr4 114442029 114442578 -41187542 - RMER13B LTR ERVK -324 584 1 6 1458 396 0 0 0 chr4 114444177 114444221 -41185899 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 1458 295 216 53 74 chr4 114444225 114444236 -41185884 - MT2B LTR ERVL -313 288 196 6 1458 557 131 0 0 chr4 114444236 114444320 -41185800 - B1_Mur4 SINE Alu -27 123 40 6 1458 259 164 0 76 chr4 114444267 114444333 -41185787 - 4.5SRNA scRNA scRNA -8 86 26 6 1458 354 328 31 92 chr4 114444741 114444936 -41185184 - B3A SINE B2 0 198 16 6 1458 264 100 0 0 chr4 114445323 114445363 -41184757 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1458 266 267 11 53 chr4 114446348 114446443 -41183677 - L2a LINE L2 -260 3166 3076 6 1458 28 48 0 0 chr4 114447424 114447466 -41182654 + AT_rich Low_complexity Low_complexity 1 42 0 6 1458 598 274 58 23 chr4 114448182 114448443 -41181677 + L1M4 LINE L1 4932 5201 -945 6 1458 695 257 56 41 chr4 114448445 114448514 -41181606 + B3A SINE B2 1 73 -125 6 1458 3672 26 28 7 chr4 114448514 114448941 -41181179 + RLTR10C LTR ERVK 1 436 0 6 1458 695 257 56 41 chr4 114448941 114449066 -41181054 + B3A SINE B2 74 198 0 6 1458 1094 263 88 45 chr4 114449072 114449620 -41180500 + L1M4 LINE L1 5188 5762 -422 6 1458 238 295 114 23 chr4 114449830 114449962 -41180158 + MER46C DNA MER2_type 158 301 -37 6 1458 333 0 0 0 chr4 114450127 114450164 -41179956 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1458 219 296 0 14 chr4 114450634 114450706 -41179414 - MIRb SINE MIR 0 268 198 6 1458 248 274 16 0 chr4 114451014 114451076 -41179044 - MIRm SINE MIR -125 151 89 6 1458 309 197 0 0 chr4 114451290 114451361 -41178759 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1458 348 151 53 40 chr4 114451367 114451443 -41178677 + HAL1-3A_ME LINE L1 1976 2052 -806 6 1458 191 317 95 55 chr4 114453760 114453948 -41176172 + L2c LINE L2 2998 3197 -190 6 1458 512 165 13 0 chr4 114454250 114454329 -41175791 + PB1D9 SINE Alu 4 83 -37 6 1458 210 37 0 0 chr4 114457058 114457085 -41173035 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1458 290 346 6 12 chr4 114458078 114458242 -41171878 + (TGGA)n Simple_repeat Simple_repeat 2 164 0 6 1458 320 105 35 0 chr4 114458259 114458316 -41171804 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 6 1458 196 316 9 112 chr4 114458450 114458557 -41171563 - MIRb SINE MIR -139 129 34 6 1458 341 352 86 18 chr4 114460032 114460252 -41169868 + MIR SINE MIR 6 240 -22 6 1458 228 340 109 0 chr4 114461327 114461435 -41168685 + MIRb SINE MIR 14 136 -126 6 1458 488 354 45 25 chr4 114462831 114463031 -41167089 + MIR SINE MIR 34 237 -25 6 1458 438 136 0 0 chr4 114463505 114463586 -41166534 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1458 618 292 112 29 chr4 114464750 114464990 -41165130 + MER58B DNA MER1_type 82 341 0 6 1458 452 18 0 17 chr4 114466281 114466339 -41163781 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1458 342 0 0 0 chr4 114469024 114469062 -41161058 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1458 483 18 0 0 chr4 114469062 114469117 -41161003 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1458 205 233 47 0 chr4 114471387 114471430 -41158690 - MIR SINE MIR -60 148 104 6 1458 550 248 73 13 chr4 114471953 114472104 -41158016 - MLT1C LTR MaLR -79 388 229 6 1458 325 331 30 18 chr4 114472137 114472303 -41157817 - MLT1C LTR MaLR -222 168 1 6 1458 552 54 11 21 chr4 114472327 114472422 -41157698 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 1458 1083 187 82 10 chr4 114472436 114472840 -41157280 - MurERV4-int LTR ERVK -4704 556 1 6 1458 513 47 0 0 chr4 114473297 114473361 -41156759 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1458 186 133 0 0 chr4 114473489 114473519 -41156601 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 6 1458 336 48 0 0 chr4 114473747 114473789 -41156331 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1458 244 218 63 13 chr4 114474903 114474982 -41155138 + MIRc SINE MIR 66 148 -120 6 1458 251 299 43 29 chr4 114475060 114475129 -41154991 + MLT1J1 LTR MaLR 47 116 -328 6 1458 230 366 0 14 chr4 114476257 114476329 -41153791 - L2b LINE L2 -211 3164 3094 6 1458 233 329 16 2 chr4 114476456 114476547 -41153573 - MIRc SINE MIR -36 172 81 6 1458 780 218 7 21 chr4 114478120 114478265 -41151855 + B1_Mus1 SINE Alu 6 148 0 6 1458 225 139 0 0 chr4 114478354 114478397 -41151723 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 6 1458 273 57 0 0 chr4 114478495 114478530 -41151590 + (TAG)n Simple_repeat Simple_repeat 3 37 0 6 1458 198 0 0 0 chr4 114478530 114478552 -41151568 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6 1458 2196 184 28 0 chr4 114478552 114478949 -41151171 + MTD LTR MaLR 12 419 0 6 1458 216 250 0 0 chr4 114479461 114479513 -41150607 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1458 350 323 165 21 chr4 114479530 114479815 -41150305 + L2b LINE L2 3047 3372 -3 6 1458 686 12 12 0 chr4 114479820 114479903 -41150217 + (TGGA)n Simple_repeat Simple_repeat 4 87 0 6 1458 699 216 0 0 chr4 114479960 114480122 -41149998 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 6 1458 270 136 0 0 chr4 114480180 114480224 -41149896 + (GGA)n Simple_repeat Simple_repeat 1 44 0 6 1458 277 297 69 43 chr4 114480532 114480580 -41149540 - MLT2F LTR ERVL -305 358 312 6 1458 387 105 0 0 chr4 114480580 114480637 -41149483 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1458 277 297 69 43 chr4 114480637 114480704 -41149416 - MLT2F LTR ERVL -352 311 240 6 1458 1710 313 76 13 chr4 114481174 114481886 -41148234 + RMER15-int LTR ERVL 26 782 -4217 6 1458 930 277 98 13 chr4 114481920 114482238 -41147882 + RMER15-int LTR ERVL 1262 1606 -3393 6 1458 553 295 105 41 chr4 114482657 114482972 -41147148 + RMER15-int LTR ERVL 1834 2168 -2831 6 1458 1172 21 7 0 chr4 114483081 114483222 -41146898 - B1_Mus1 SINE Alu -1 147 6 6 1458 566 330 52 0 chr4 114483224 114483418 -41146702 + RMER15-int LTR ERVL 2358 2561 -2438 6 1458 1038 66 7 0 chr4 114483457 114483594 -41146526 - B2_Mm2 SINE B2 -55 140 3 6 1458 516 182 27 2 chr4 114483617 114483727 -41146393 + B1_Mur3 SINE Alu 1 120 0 6 1458 327 203 24 48 chr4 114483729 114483812 -41146308 + Lx8 LINE L1 6259 6339 -1134 6 1458 2337 144 31 25 chr4 114483841 114484233 -41145887 - ORR1B1 LTR MaLR 0 394 1 6 1458 5876 174 51 24 chr4 114484233 114485581 -41144539 - ORR1B1-int LTR MaLR 0 1509 2 6 1458 2347 156 23 8 chr4 114485582 114485969 -41144151 - ORR1B1 LTR MaLR 0 394 2 6 1458 466 297 64 85 chr4 114486025 114486139 -41143981 + Lx8 LINE L1 6775 6895 -578 6 1458 1934 183 64 39 chr4 114486139 114486548 -41143572 - MTD LTR MaLR 0 419 1 6 1458 466 297 64 85 chr4 114486548 114486761 -41143359 + Lx8 LINE L1 6896 7095 -378 6 1458 489 240 20 20 chr4 114486761 114486863 -41143257 + B2_Mm2 SINE B2 2 103 -92 6 1458 297 0 0 0 chr4 114486865 114486898 -41143222 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1458 225 149 0 78 chr4 114486923 114486974 -41143146 + Lx8 LINE L1 7085 7131 -342 6 1458 239 234 114 25 chr4 114487164 114487243 -41142877 + RMER15 LTR ERVL 336 421 -154 6 1458 289 310 36 19 chr4 114487367 114487495 -41142625 - MLT2F LTR ERVL -489 139 11 6 1458 363 301 145 68 chr4 114487763 114487998 -41142122 - MLT1J LTR MaLR -144 368 116 6 1458 188 286 53 5 chr4 114488103 114488183 -41141937 + MIRb SINE MIR 2 90 -178 6 1458 5120 192 43 32 chr4 114488315 114489496 -41140624 - Lx9 LINE L1 -1 7643 6450 6 1458 396 0 0 0 chr4 114489510 114489554 -41140566 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1458 538 304 0 0 chr4 114489555 114489670 -41140450 - RSINE1 SINE B4 -50 115 1 6 1458 210 323 31 0 chr4 114489710 114489775 -41140345 - MIR SINE MIR -55 153 87 6 1458 340 281 95 40 chr4 114489777 114489903 -41140217 - L2b LINE L2 -1 3374 3242 6 1458 731 277 43 11 chr4 114490535 114490721 -41139399 + B3A SINE B2 2 193 -5 6 1458 180 284 0 75 chr4 114491344 114491424 -41138696 - MIR SINE MIR -83 125 52 6 1458 267 345 52 0 chr4 114492227 114492343 -41137777 + MIR SINE MIR 67 188 -74 6 1458 226 238 16 0 chr4 114493220 114493282 -41136838 - MIRm SINE MIR -90 172 108 6 1458 21 0 0 0 chr4 114494610 114494631 -41135489 + GC_rich Low_complexity Low_complexity 1 21 0 6 1458 334 333 0 38 chr4 114494666 114494940 -41135180 + GA-rich Low_complexity Low_complexity 1 263 0 6 1458 1253 91 16 38 chr4 114495535 114495718 -41134402 + B2_Mm2 SINE B2 1 179 -16 6 1458 234 330 35 94 chr4 114495994 114496195 -41133925 - MLT1J LTR MaLR -1 511 323 6 1458 245 213 0 0 chr4 114496654 114496701 -41133419 + MIR SINE MIR 139 185 -77 6 1458 3206 100 23 7 chr4 114497243 114497905 -41132215 - Lx5 LINE L1 -995 6055 5383 6 1458 4282 176 74 42 chr4 114497906 114498883 -41131237 + Lx5 LINE L1 6043 7050 0 6 1458 33 0 0 0 chr4 114498883 114498916 -41131204 + AT_rich Low_complexity Low_complexity 1 33 0 6 1458 670 272 15 30 chr4 114499003 114499029 -41131091 - B3A SINE B2 -4 194 168 6 1458 267 31 0 0 chr4 114499029 114499061 -41131059 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1458 670 272 15 30 chr4 114499061 114499231 -41130889 - B3A SINE B2 -31 167 2 6 1458 940 312 95 21 chr4 114499367 114499789 -41130331 + Kanga11a DNA Tc2 189 641 -329 6 1458 300 53 0 0 chr4 114500043 114500081 -41130039 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1458 515 133 31 55 chr4 114500081 114500208 -41129912 + Lx9 LINE L1 7521 7644 0 2 1458 186 180 32 16 chr4 114500335 114500397 -41129723 + GA-rich Low_complexity Low_complexity 1 63 0 3 1458 183 80 0 0 chr4 114500830 114500855 -41129265 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1458 404 297 48 75 chr4 114500882 114501177 -41128943 - B4 SINE B4 -1 291 5 5 1458 203 309 15 0 chr4 114501558 114501626 -41128494 + MIRc SINE MIR 49 117 -151 6 1458 204 256 0 0 chr4 114501688 114501731 -41128389 + MIRm SINE MIR 226 268 -8 7 1458 459 286 116 30 chr4 114501841 114502046 -41128074 + MLT1H2 LTR MaLR 71 291 -258 8 1458 470 314 145 122 chr4 114502115 114502550 -41127570 - MLT1F2 LTR MaLR -12 548 99 9 1458 2043 279 80 71 chr4 114503495 114504088 -41126032 + MER44C DNA MER2_type 1 604 -129 1 1458 432 0 0 0 chr4 114504088 114504136 -41125984 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1458 2043 279 80 71 chr4 114504136 114504257 -41125863 + MER44C DNA MER2_type 605 721 -12 1 1458 198 318 95 0 chr4 114504257 114504320 -41125800 - L3 LINE CR1 -81 4408 4340 1 1458 421 302 90 30 chr4 114504321 114504488 -41125632 + MIR SINE MIR 10 186 -76 1 1458 438 20 0 0 chr4 114505000 114505051 -41125069 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1458 231 185 36 18 chr4 114505393 114505448 -41124672 + LTR33 LTR ERVL 392 447 -68 1 1458 1044 185 48 29 chr4 114505458 114505664 -41124456 + B3 SINE B2 3 212 -4 1 1458 291 140 0 0 chr4 114505669 114505719 -41124401 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 1458 229 299 62 0 chr4 114505867 114505964 -41124156 + L1MB3 LINE L1 6042 6144 -39 1 1458 255 216 98 98 chr4 114505977 114506059 -41124061 - ID4 SINE ID 0 83 2 1 1458 237 305 0 0 chr4 114506094 114506199 -41123921 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1458 497 278 86 31 chr4 114506481 114506644 -41123476 + MLT1A LTR MaLR 17 188 -186 2 1458 293 267 202 73 chr4 114506694 114506872 -41123248 + MLT1A LTR MaLR 173 373 -1 2 1458 380 229 118 9 chr4 114506990 114507100 -41123020 + MIR SINE MIR 32 153 -55 2 1458 320 310 8 41 chr4 114507112 114507233 -41122887 - Charlie15a DNA MER1_type -11 213 97 2 1458 356 341 80 48 chr4 114508056 114508244 -41121876 - MIRb SINE MIR -33 235 42 2 1458 521 200 33 0 chr4 114508537 114508627 -41121493 + B4A SINE B4 1 93 -199 2 1458 190 326 133 4 chr4 114509173 114509276 -41120844 + MIR SINE MIR 76 200 -76 2 1458 220 333 98 23 chr4 114509326 114509458 -41120662 - L2c LINE L2 -167 3220 3079 2 1458 533 268 26 19 chr4 114510417 114510573 -41119547 + MIR SINE MIR 71 227 -35 2 1458 321 305 159 22 chr4 114510573 114510781 -41119339 + MLT1E3 LTR MaLR 367 625 -28 2 1458 240 260 106 40 chr4 114510788 114510913 -41119207 - MLT1G1 LTR MaLR -388 191 20 3 1458 880 192 20 0 chr4 114511979 114512125 -41117995 + URR1B DNA MER1_type 1 149 -76 3 1458 1230 109 4 0 chr4 114512491 114512746 -41117374 + (TGGA)n Simple_repeat Simple_repeat 1 255 0 3 1458 222 364 73 0 chr4 114512843 114512953 -41117167 + L3 LINE CR1 4183 4300 -189 3 1458 238 289 54 22 chr4 114513408 114513500 -41116620 + MIR SINE MIR 162 256 -6 3 1458 819 48 0 0 chr4 114515535 114515639 -41114481 + (GGGA)n Simple_repeat Simple_repeat 3 106 0 3 1458 320 308 88 0 chr4 114516691 114516782 -41113338 + B3A SINE B2 62 160 -38 3 1458 420 20 0 0 chr4 114516786 114516835 -41113285 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1458 1043 199 0 83 chr4 114516854 114517084 -41113036 + B3 SINE B2 1 211 -5 3 1458 633 170 54 0 chr4 114517589 114517701 -41112419 - U1 snRNA snRNA -1 164 47 3 1458 180 263 40 81 chr4 114519536 114519660 -41110460 + MIRb SINE MIR 1 119 -149 4 1458 448 241 98 0 chr4 114519808 114519982 -41110138 - MER53 DNA hAT -1 192 2 4 1458 456 67 0 0 chr4 114520224 114520284 -41109836 + (CTG)n Simple_repeat Simple_repeat 3 62 0 4 1458 2989 35 3 0 chr4 114520381 114520726 -41109394 + ORR1A1 LTR MaLR 1 346 0 4 1458 408 273 173 22 chr4 114520804 114521029 -41109091 + ORR1E LTR MaLR 1 259 -111 4 1458 346 237 39 49 chr4 114521114 114521216 -41108904 + ORR1E LTR MaLR 278 378 -1 4 1458 941 261 5 9 chr4 114521363 114521576 -41108544 - B3 SINE B2 -4 212 1 4 1458 274 286 80 29 chr4 114521778 114521915 -41108205 - MIRb SINE MIR -71 197 54 4 1458 279 343 75 0 chr4 114522172 114522306 -41107814 + MIRc SINE MIR 108 251 -17 4 1458 234 0 0 0 chr4 114522660 114522686 -41107434 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1458 907 229 12 0 chr4 114522910 114523080 -41107040 + ID_B1 SINE B4 6 177 -47 4 1458 270 309 6 105 chr4 114523107 114523288 -41106832 + L1MC LINE L1 2927 3089 -3057 5 1458 1230 74 90 11 chr4 114523339 114523516 -41106604 + B2_Mm2 SINE B2 1 191 -4 5 1458 601 286 8 0 chr4 114523522 114523648 -41106472 + B1F1 SINE Alu 2 128 -21 5 1458 1086 209 0 45 chr4 114523721 114523942 -41106178 + B3 SINE B2 1 211 -5 5 1458 343 272 28 28 chr4 114523964 114524070 -41106050 + L1MC LINE L1 3160 3265 -2881 5 1458 237 293 148 20 chr4 114524072 114524173 -41105947 + ID_B1 SINE B4 4 117 -107 5 1458 341 319 105 12 chr4 114524192 114524354 -41105766 + B4 SINE B4 22 198 -94 5 1458 669 212 17 0 chr4 114524261 114524379 -41105741 + B1_Mur1 SINE Alu 15 134 -15 5 1458 312 256 22 94 chr4 114524385 114524523 -41105597 + L1M5 LINE L1 3341 3468 -2678 5 1458 869 134 82 0 chr4 114524538 114524672 -41105448 + B1_Mus1 SINE Alu 1 145 -3 5 1458 279 0 0 0 chr4 114524713 114524744 -41105376 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1458 447 204 16 0 chr4 114525093 114525182 -41104938 + PB1D10 SINE Alu 7 99 -50 6 1458 386 290 10 0 chr4 114525182 114525193 -41104927 + ID_B1 SINE B4 88 188 -36 5 1458 1292 277 119 29 chr4 114525193 114525806 -41104314 + L1ME2 LINE L1 5400 6067 -97 6 1458 541 280 20 70 chr4 114525807 114526007 -41104113 + ORR1E LTR MaLR 1 190 -169 6 1458 183 200 0 82 chr4 114526579 114526628 -41103492 - L2 LINE L2 -2827 592 548 6 1458 221 311 0 0 chr4 114526604 114526665 -41103455 + L2a LINE L2 3365 3425 -1 6 1458 937 260 55 43 chr4 114527310 114527567 -41102553 + B4 SINE B4 28 287 -5 6 1458 333 294 16 56 chr4 114527854 114527980 -41102140 - MER63A DNA AcHobo -51 159 39 6 1458 240 208 143 0 chr4 114528731 114528808 -41101312 + MLT1N2 LTR MaLR 465 552 -10 6 1458 419 259 29 7 chr4 114528973 114529109 -41101011 + B1F SINE Alu 2 140 -9 6 1458 393 185 0 0 chr4 114529191 114529310 -41100810 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 6 1458 1133 155 62 10 chr4 114529919 114530114 -41100006 - URR1B DNA MER1_type -16 209 5 7 1458 522 196 31 0 chr4 114530454 114530551 -41099569 - PB1D9 SINE Alu 0 120 21 7 1458 544 347 54 36 chr4 114531600 114531992 -41098128 + L2a LINE L2 3026 3424 -2 7 1458 190 302 19 0 chr4 114532069 114532122 -41097998 + MIRc SINE MIR 112 165 -103 7 1458 1494 55 0 0 chr4 114532762 114533202 -41096918 + (TGG)n Simple_repeat Simple_repeat 1 440 0 7 1458 466 308 20 33 chr4 114533212 114533363 -41096757 - RSINE1 SINE B4 -9 156 8 7 1458 254 206 16 0 chr4 114533745 114533808 -41096312 + A-rich Low_complexity Low_complexity 5 68 0 7 1458 311 289 10 0 chr4 114533932 114534029 -41096091 + MER5A1 DNA MER1_type 67 164 -2 7 1458 244 250 0 0 chr4 114535320 114535380 -41094740 - L2b LINE L2 -215 3160 3101 7 1458 302 309 61 61 chr4 114536389 114536520 -41093600 - MIRc SINE MIR -30 238 108 7 1458 329 298 89 24 chr4 114536658 114536782 -41093338 - L2b LINE L2 -1 3374 3243 8 1458 549 306 44 22 chr4 114536795 114537022 -41093098 + L2a LINE L2 2960 3191 -235 8 1458 869 241 4 23 chr4 114537447 114537659 -41092461 - B3A SINE B2 -3 213 2 8 1458 195 232 79 111 chr4 114538626 114538689 -41091431 + L2a LINE L2 3298 3358 -17 8 1458 254 330 69 9 chr4 114539248 114539364 -41090756 - MIRb SINE MIR -74 194 72 8 1458 3748 226 153 9 chr4 114539414 114540313 -41089807 + RMER1A Other Other 1 1029 -1 8 1458 1218 61 0 0 chr4 114540463 114540610 -41089510 + B1_Mus1 SINE Alu 2 148 0 8 1458 302 221 0 10 chr4 114540719 114540815 -41089305 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1458 371 268 39 84 chr4 114541171 114541350 -41088770 + L1MC4a LINE L1 7462 7632 -250 8 1458 414 0 0 0 chr4 114541712 114541758 -41088362 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1458 401 162 45 19 chr4 114541760 114541917 -41088203 + (TG)n Simple_repeat Simple_repeat 2 162 0 8 1458 195 329 49 25 chr4 114542342 114542423 -41087697 - L2 LINE L2 -701 2718 2636 9 1458 355 282 48 0 chr4 114542440 114542543 -41087577 - PB1 SINE Alu -19 108 1 9 1458 310 241 35 61 chr4 114543628 114543743 -41086377 + MLT1D LTR MaLR 258 369 -136 9 1458 643 139 24 24 chr4 114543905 114544075 -41086045 + (TG)n Simple_repeat Simple_repeat 2 171 0 9 1458 1516 250 59 20 chr4 114544203 114544611 -41085509 + RCHARR1 DNA MER1_type 72 495 -479 9 1458 446 202 34 0 chr4 114544614 114544703 -41085417 + RSINE1 SINE B4 4 95 -70 9 1458 1139 251 11 15 chr4 114544738 114545005 -41085115 + RCHARR1 DNA MER1_type 476 741 -233 9 1458 611 272 79 79 chr4 114545081 114545151 -41084969 - B4 SINE B4 -12 280 229 9 1458 306 0 0 0 chr4 114545151 114545185 -41084935 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1458 611 272 79 79 chr4 114545185 114545393 -41084727 - B4 SINE B4 -64 228 2 9 1458 2226 62 58 55 chr4 114545429 114545755 -41084365 - ORR1A2 LTR MaLR 0 327 1 9 1458 4831 239 90 11 chr4 114545759 114546126 -41083994 - Lx8 LINE L1 -60 7413 7015 9 1458 1429 60 16 21 chr4 114546126 114546314 -41083806 - B2_Mm2 SINE B2 -7 188 2 1 1458 4831 239 90 11 chr4 114546314 114547133 -41082987 - Lx8 LINE L1 -459 7014 6133 9 1458 798 264 17 61 chr4 114547169 114547463 -41082657 + RCHARR1 DNA MER1_type 694 974 0 9 1458 236 341 37 44 chr4 114547669 114547804 -41082316 + L2c LINE L2 3254 3387 0 1 1458 190 360 48 29 chr4 114548207 114548310 -41081810 - MIR SINE MIR -66 142 38 1 1458 219 36 0 0 chr4 114548645 114548673 -41081447 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1458 677 224 99 49 chr4 114548856 114549080 -41081040 - MIR SINE MIR -6 262 25 1 1458 1155 97 0 0 chr4 114549795 114549950 -41080170 + B2_Mm2 SINE B2 2 156 -39 1 1458 624 91 0 0 chr4 114549951 114550039 -41080081 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1458 639 276 132 17 chr4 114550040 114550391 -41079729 - L1MA9 LINE L1 -100 6212 5803 1 1458 369 0 0 0 chr4 114550391 114550432 -41079688 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1458 639 273 159 14 chr4 114550432 114550574 -41079546 - L1MA9 LINE L1 -510 5802 5620 1 1458 343 300 150 20 chr4 114550657 114550810 -41079310 - MIRb SINE MIR -63 205 33 1 1458 411 270 72 41 chr4 114550967 114551140 -41078980 - MIR SINE MIR -66 196 9 1 1458 279 0 0 0 chr4 114551186 114551217 -41078903 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1458 185 272 103 52 chr4 114551970 114552067 -41078053 + MIRc SINE MIR 23 124 -144 1 1458 21 36 0 0 chr4 114552542 114552570 -41077550 + AT_rich Low_complexity Low_complexity 1 28 0 1 1458 1195 114 49 0 chr4 114552763 114552947 -41077173 + B2_Mm2 SINE B2 2 194 -1 1 1458 243 225 16 35 chr4 114553591 114553658 -41076462 + L2b LINE L2 3309 3379 -8 1 1458 423 126 21 10 chr4 114554020 114554116 -41076004 + (TGGA)n Simple_repeat Simple_repeat 4 100 0 1 1458 844 174 8 0 chr4 114554213 114554345 -41075775 + B1_Mur4 SINE Alu 11 143 -7 1 1458 257 372 75 67 chr4 114555643 114555974 -41074146 - L2c LINE L2 -25 3362 3029 1 1458 362 258 41 24 chr4 114556187 114556310 -41073810 + ID_B1 SINE B4 100 224 0 1 1458 235 329 47 14 chr4 114556412 114556442 -41073678 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 1 1458 243 0 0 0 chr4 114556442 114556469 -41073651 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1 1458 235 282 27 27 chr4 114556469 114556713 -41073407 + (TGGA)n Simple_repeat Simple_repeat 1 243 0 1 1459 25 0 0 0 chr4 114556970 114556995 -41073125 + AT_rich Low_complexity Low_complexity 1 25 0 1 1459 496 262 41 41 chr4 114556995 114557142 -41072978 - B1F1 SINE Alu -1 148 2 1 1459 908 196 0 0 chr4 114558101 114558244 -41071876 + B1_Mur1 SINE Alu 1 143 -6 1 1459 300 374 84 0 chr4 114558422 114558553 -41071567 + ID_B1 SINE B4 1 142 -82 1 1459 255 218 18 18 chr4 114558515 114558571 -41071549 + B1F2 SINE Alu 24 79 -70 1 1459 929 229 0 45 chr4 114558740 114558960 -41071160 + B3 SINE B2 1 210 -6 1 1459 21 36 0 0 chr4 114558974 114559002 -41071118 + AT_rich Low_complexity Low_complexity 1 28 0 1 1459 561 254 9 0 chr4 114559013 114559123 -41070997 + B3A SINE B2 1 111 -87 1 1459 249 33 0 0 chr4 114559217 114559247 -41070873 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1459 250 323 58 69 chr4 114559456 114559629 -41070491 - MIR SINE MIR -59 203 33 1 1459 180 0 0 0 chr4 114559979 114559999 -41070121 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1459 285 29 0 0 chr4 114561262 114561296 -41068824 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1459 303 314 67 116 chr4 114561391 114561485 -41068635 + B4A SINE B4 4 95 -197 1 1459 1446 43 37 21 chr4 114561485 114561675 -41068445 + B2_Mm2 SINE B2 1 193 -2 1 1459 303 314 67 116 chr4 114561675 114561865 -41068255 + B4A SINE B4 96 274 -18 1 1459 355 207 48 24 chr4 114561936 114562020 -41068100 + B4A SINE B4 68 153 -139 1 1459 609 259 28 90 chr4 114562023 114562201 -41067919 + B4A SINE B4 126 292 0 1 1459 190 189 293 13 chr4 114563445 114563483 -41066637 + MIR SINE MIR 160 250 -7 1 1459 198 188 0 0 chr4 114563483 114563515 -41066605 + L2c LINE L2 3337 3368 -19 1 1459 291 361 0 47 chr4 114563630 114563758 -41066362 - Charlie15a DNA MER1_type -42 182 61 1 1459 266 219 62 0 chr4 114563931 114563995 -41066125 - MIRb SINE MIR -8 260 193 1 1459 208 324 61 61 chr4 114564065 114564180 -41065940 - MIR SINE MIR -81 187 66 1 1459 189 214 0 0 chr4 114564620 114564662 -41065458 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1459 287 294 23 78 chr4 114566019 114566148 -41063972 + MLT1J1 LTR MaLR 93 214 -230 1 1459 435 304 41 47 chr4 114566214 114566383 -41063737 + Charlie4a DNA MER1_type 17 184 -324 1 1459 352 288 22 29 chr4 114566660 114566796 -41063324 + Charlie4a DNA MER1_type 349 483 -25 1 1459 182 346 26 78 chr4 114567054 114567170 -41062950 + L2b LINE L2 3064 3173 -214 1 1459 1151 95 0 0 chr4 114567209 114567356 -41062764 + B1_Mm SINE Alu 1 147 0 1 1459 490 254 17 0 chr4 114567647 114567765 -41062355 + Tigger7 DNA MER2_type 2 121 -2370 1 1459 461 238 89 30 chr4 114567751 114567920 -41062200 + Tigger7 DNA MER2_type 2268 2446 -45 1 1459 252 146 0 24 chr4 114567988 114568030 -41062090 + Tigger7 DNA MER2_type 2451 2491 0 1 1459 870 203 28 22 chr4 114568694 114568875 -41061245 + B2_Mm2 SINE B2 2 183 -12 1 1459 380 213 67 0 chr4 114568884 114568959 -41061161 + ID4_ SINE ID 2 81 -2 1 1459 252 313 0 56 chr4 114569638 114569752 -41060368 + L2b LINE L2 3254 3348 -27 1 1459 414 0 0 0 chr4 114571892 114571938 -41058182 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1459 557 164 27 123 chr4 114573363 114573509 -41056611 - B1_Mur1 SINE Alu -1 148 17 1 1459 290 265 34 147 chr4 114573367 114573544 -41056576 - ID_B1 SINE B4 -3 221 65 1 1459 198 191 0 0 chr4 114576200 114576247 -41053873 + (AAATG)n Simple_repeat Simple_repeat 2 48 0 1 1459 396 0 0 0 chr4 114576896 114576940 -41053180 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1459 516 59 0 0 chr4 114577208 114577276 -41052844 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1459 390 42 0 0 chr4 114578327 114578375 -41051745 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1459 30 0 0 0 chr4 114579276 114579306 -41050814 + AT_rich Low_complexity Low_complexity 1 30 0 1 1459 23 0 0 0 chr4 114580476 114580499 -41049621 + GC_rich Low_complexity Low_complexity 1 23 0 1 1459 34 99 0 0 chr4 114581060 114581171 -41048949 + GC_rich Low_complexity Low_complexity 1 111 0 1 1459 291 85 0 0 chr4 114581429 114581476 -41048644 + (CCG)n Simple_repeat Simple_repeat 3 49 0 1 1459 225 0 0 0 chr4 114582425 114582450 -41047670 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1459 340 281 116 22 chr4 114582984 114583122 -41046998 + MIR SINE MIR 16 166 -96 1 1459 444 261 8 51 chr4 114583122 114583239 -41046881 + PB1D7 SINE Alu 1 112 -8 1 1459 204 125 0 0 chr4 114583423 114583455 -41046665 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1459 1734 26 0 0 chr4 114583897 114584090 -41046030 + B2_Mm1t SINE B2 1 193 0 1 1459 216 182 0 0 chr4 114586758 114586802 -41043318 + CT-rich Low_complexity Low_complexity 2 45 0 1 1459 284 374 30 15 chr4 114587153 114587286 -41042834 - MIRm SINE MIR -117 159 25 1 1459 322 284 59 136 chr4 114587855 114588075 -41042045 + L1MC4a LINE L1 5677 5879 -2003 1 1459 661 246 41 21 chr4 114588134 114588279 -41041841 - B1_Mur2 SINE Alu -1 148 1 1 1459 340 303 24 32 chr4 114590159 114590285 -41039835 + MIRb SINE MIR 41 165 -103 1 1459 448 206 180 70 chr4 114590298 114590432 -41039688 + B3 SINE B2 1 152 -41 1 1459 315 0 0 0 chr4 114590432 114590467 -41039653 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1459 387 0 0 0 chr4 114590467 114590509 -41039611 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1459 285 206 180 70 chr4 114590509 114590545 -41039575 + B2_Mm1a SINE B2 153 190 -3 1 1459 1046 53 8 8 chr4 114590658 114590786 -41039334 + B1_Mus1 SINE Alu 10 138 -10 1 1459 194 0 39 0 chr4 114590786 114590812 -41039308 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1459 215 211 0 0 chr4 114590835 114590873 -41039247 + polypyrimidine Low_complexity Low_complexity 1 38 0 1 1459 752 189 87 0 chr4 114590875 114591002 -41039118 - B1_Mur1 SINE Alu -11 138 1 1 1459 898 175 24 87 chr4 114591054 114591102 -41039018 - B2_Mm2 SINE B2 0 195 161 1 1459 360 0 0 0 chr4 114591102 114591142 -41038978 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 1 1459 898 175 24 87 chr4 114591142 114591300 -41038820 - B2_Mm2 SINE B2 -35 160 2 1 1459 246 345 8 50 chr4 114591533 114591652 -41038468 + L2 LINE L2 2717 2830 -589 1 1459 535 260 38 45 chr4 114592097 114592254 -41037866 + RSINE1 SINE B4 10 165 0 1 1459 1230 127 16 0 chr4 114592631 114592820 -41037300 + B2_Mm2 SINE B2 3 194 -1 1 1459 627 271 84 78 chr4 114593069 114593570 -41036550 + HAL1 LINE L1 1709 2212 -295 1 1459 537 16 0 0 chr4 114593729 114593791 -41036329 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 1 1459 1274 34 0 0 chr4 114593791 114593937 -41036183 + B1_Mus2 SINE Alu 2 147 0 1 1459 453 116 0 0 chr4 114593939 114594008 -41036112 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 1 1459 1081 101 89 6 chr4 114594372 114594551 -41035569 + B2_Mm2 SINE B2 2 195 0 1 1459 575 294 32 56 chr4 114594551 114594767 -41035353 - B3 SINE B2 -5 211 1 1 1459 1212 218 0 5 chr4 114594781 114594998 -41035122 - B3 SINE B2 0 216 1 1 1459 675 226 148 15 chr4 114594999 114595201 -41034919 - B4A SINE B4 -62 230 2 1 1459 461 214 78 26 chr4 114596581 114596696 -41033424 - MER5A1 DNA MER1_type -37 129 9 1 1459 180 0 0 0 chr4 114598097 114598117 -41032003 + (CGG)n Simple_repeat Simple_repeat 2 21 0 1 1459 321 266 169 60 chr4 114599798 114599982 -41030138 - MIRb SINE MIR -8 260 57 1 1459 220 308 0 0 chr4 114600042 114600094 -41030026 + B1F1 SINE Alu 1 52 -97 1 1459 312 27 0 0 chr4 114600100 114600137 -41029983 + (CTAGG)n Simple_repeat Simple_repeat 2 38 0 1 1459 493 286 122 50 chr4 114600229 114600498 -41029622 + B4 SINE B4 18 276 -16 1 1459 224 0 0 61 chr4 114601287 114601320 -41028800 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 1 1459 207 88 0 0 chr4 114601538 114601572 -41028548 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1459 5135 57 5 2 chr4 114602466 114603098 -41027022 + L1_Mus1 LINE L1 5934 6567 0 2 1459 197 304 99 50 chr4 114603501 114603622 -41026498 - L2b LINE L2 -164 3211 3085 2 1459 198 341 104 37 chr4 114603629 114603763 -41026357 + L2b LINE L2 3226 3368 -7 2 1459 294 29 0 0 chr4 114604571 114604606 -41025514 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1459 771 248 66 14 chr4 114605726 114605939 -41024181 + Charlie23a DNA MER1_type 54 277 -62 2 1459 309 285 149 62 chr4 114606475 114606781 -41023339 - MLT1L LTR MaLR -146 449 113 2 1459 414 0 0 0 chr4 114606835 114606881 -41023239 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1459 552 262 70 14 chr4 114607445 114607588 -41022532 + MER63B DNA AcHobo 281 431 -5 2 1459 636 220 75 15 chr4 114608054 114608188 -41021932 + B1_Mur2 SINE Alu 7 148 -1 2 1459 966 313 40 19 chr4 114608277 114608697 -41021423 - Lx8 LINE L1 -158 7315 6887 2 1459 311 285 112 39 chr4 114608697 114608876 -41021244 + L1ME4a LINE L1 5859 6050 -74 2 1459 338 308 24 24 chr4 114609143 114609266 -41020854 + PB1 SINE Alu 3 125 -2 2 1459 306 106 0 0 chr4 114609266 114609313 -41020807 + (GGA)n Simple_repeat Simple_repeat 2 48 0 2 1459 749 284 12 0 chr4 114609410 114609579 -41020541 + B3A SINE B2 2 172 -26 2 1459 387 0 0 0 chr4 114609584 114609627 -41020493 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1459 227 247 83 31 chr4 114609732 114609828 -41020292 - MIRc SINE MIR -117 151 51 2 1459 237 83 0 0 chr4 114610375 114610411 -41019709 + (CCTG)n Simple_repeat Simple_repeat 1 36 0 2 1459 220 170 0 41 chr4 114610670 114610719 -41019401 + A-rich Low_complexity Low_complexity 4 50 0 2 1459 274 80 20 20 chr4 114610751 114610802 -41019318 + (TTTG)n Simple_repeat Simple_repeat 4 54 0 2 1459 971 133 34 27 chr4 114610802 114610949 -41019171 - B1_Mur2 SINE Alu 0 149 2 2 1459 252 359 68 60 chr4 114610983 114611217 -41018903 + L2b LINE L2 3133 3368 -7 2 1459 196 267 0 74 chr4 114611297 114611378 -41018742 - MIRc SINE MIR -79 189 115 2 1459 243 243 0 17 chr4 114611834 114611901 -41018219 - MIRb SINE MIR -88 180 115 2 1459 468 0 0 0 chr4 114612172 114612224 -41017896 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1459 423 0 0 0 chr4 114612224 114612270 -41017850 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1459 554 0 15 0 chr4 114613332 114613398 -41016722 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1459 192 97 0 0 chr4 114613530 114613561 -41016559 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1459 213 205 0 0 chr4 114613602 114613641 -41016479 - ID4 SINE ID -43 40 2 2 1459 225 0 0 0 chr4 114613663 114613688 -41016432 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1459 765 39 0 0 chr4 114613690 114613793 -41016327 - B1_Mus2 SINE Alu -6 141 39 2 1459 859 219 20 35 chr4 114613817 114614016 -41016104 - B3A SINE B2 -2 196 1 2 1459 537 246 47 74 chr4 114614439 114614742 -41015378 + MTEa LTR MaLR 19 379 0 2 1459 953 142 0 7 chr4 114616478 114616620 -41013500 + B1_Mus1 SINE Alu 3 143 -5 2 1459 317 171 11 0 chr4 114616624 114616712 -41013408 + GA-rich Low_complexity Low_complexity 2 90 0 2 1459 485 177 186 87 chr4 114616716 114616877 -41013243 + MTD LTR MaLR 198 374 -45 2 1459 22 56 0 0 chr4 114617265 114617301 -41012819 + AT_rich Low_complexity Low_complexity 1 36 0 2 1459 721 302 99 16 chr4 114617550 114617988 -41012132 - MLT1E2 LTR MaLR 0 624 138 2 1459 595 291 137 35 chr4 114618241 114618554 -41011566 + MLT1E2 LTR MaLR 236 580 -47 2 1459 1913 92 35 22 chr4 114619172 114619485 -41010635 + ORR1A3 LTR MaLR 1 317 -9 2 1459 290 304 49 56 chr4 114619572 114619715 -41010405 - B4A SINE B4 -150 142 1 2 1459 254 260 0 27 chr4 114620981 114621056 -41009064 + GA-rich Low_complexity Low_complexity 1 73 0 2 1459 652 191 85 51 chr4 114622194 114622371 -41007749 + B4 SINE B4 110 292 0 2 1459 405 102 0 0 chr4 114622373 114622432 -41007688 + (CATA)n Simple_repeat Simple_repeat 1 59 0 2 1459 510 265 20 33 chr4 114623008 114623160 -41006960 + RSINE1 SINE B4 2 151 -14 2 1459 186 71 0 0 chr4 114623165 114623193 -41006927 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 2 1459 767 216 22 49 chr4 114623221 114623406 -41006714 + B3A SINE B2 4 183 -15 2 1459 1181 43 0 0 chr4 114623426 114623564 -41006556 - B1_Mus1 SINE Alu -9 139 2 2 1459 555 254 6 70 chr4 114623599 114623756 -41006364 + B1_Mur1 SINE Alu 1 147 -2 2 1459 234 299 104 0 chr4 114623782 114623859 -41006261 + RSINE1 SINE B4 3 87 -78 2 1459 521 240 0 30 chr4 114624201 114624334 -41005786 + RSINE1 SINE B4 34 162 -3 2 1459 342 0 0 0 chr4 114624334 114624372 -41005748 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1459 207 0 0 0 chr4 114624636 114624659 -41005461 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1459 754 211 8 0 chr4 114624665 114624798 -41005322 - B1_Mur1 SINE Alu -13 136 3 2 1459 342 263 26 0 chr4 114625078 114625154 -41004966 + RSINE1 SINE B4 67 144 -21 2 1459 495 0 0 0 chr4 114625154 114625209 -41004911 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1459 319 158 211 0 chr4 114625238 114625314 -41004806 - PB1D9 SINE Alu -5 115 24 2 1459 3007 200 191 67 chr4 114625330 114626251 -41003869 - RMER1B Other Other -5 1061 27 2 1459 891 112 0 0 chr4 114626309 114626443 -41003677 + (GA)n Simple_repeat Simple_repeat 1 134 0 2 1459 452 207 144 0 chr4 114626449 114626560 -41003560 + ID_B1 SINE B4 82 208 -16 2 1459 261 0 0 0 chr4 114626560 114626589 -41003531 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 2 1459 5785 59 0 0 chr4 114626698 114627410 -41002710 - L1Md_F2 LINE L1 0 6582 5871 2 1459 2166 136 41 41 chr4 114627418 114627810 -41002310 - ORR1B1 LTR MaLR -2 392 1 2 1459 216 295 67 48 chr4 114627842 114627982 -41002138 + MIRb SINE MIR 45 197 -71 2 1459 346 228 13 123 chr4 114628029 114628174 -41001946 + B1F SINE Alu 9 140 -9 2 1459 279 130 0 0 chr4 114628174 114628228 -41001892 + (CTAA)n Simple_repeat Simple_repeat 3 56 0 2 1459 514 240 260 9 chr4 114628237 114628468 -41001652 + B4A SINE B4 4 292 0 2 1459 1408 70 32 0 chr4 114628674 114628860 -41001260 - B2_Mm2 SINE B2 -3 192 1 2 1459 21 36 0 0 chr4 114629099 114629127 -41000993 + AT_rich Low_complexity Low_complexity 1 28 0 2 1459 333 287 57 47 chr4 114629650 114629756 -41000364 - PB1 SINE Alu -19 108 2 2 1459 313 269 13 13 chr4 114629791 114629870 -41000250 - ID4 SINE ID 0 83 5 2 1459 387 202 20 50 chr4 114630346 114630445 -40999675 + PB1D9 SINE Alu 20 115 -5 2 1459 831 95 182 0 chr4 114630514 114630640 -40999480 + B1_Mur4 SINE Alu 2 150 0 2 1459 232 263 18 0 chr4 114631292 114631349 -40998771 + B4A SINE B4 86 143 -149 2 1459 381 247 31 10 chr4 114631300 114631398 -40998722 + PB1D7 SINE Alu 10 109 -11 2 1459 24 32 0 0 chr4 114632596 114632627 -40997493 + AT_rich Low_complexity Low_complexity 1 31 0 2 1459 913 233 24 14 chr4 114632732 114632945 -40997175 + B3 SINE B2 2 216 0 2 1459 1073 118 50 17 chr4 114633025 114633206 -40996914 + B2_Mm1t SINE B2 6 192 -1 2 1459 288 0 0 0 chr4 114634541 114634573 -40995547 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1459 991 51 0 164 chr4 114634586 114634751 -40995369 - B1_Mus2 SINE Alu -9 138 1 2 1459 1209 34 0 14 chr4 114634783 114634931 -40995189 - B1_Mm SINE Alu 0 147 2 2 1459 333 0 0 0 chr4 114636538 114636575 -40993545 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1459 1533 58 21 0 chr4 114636577 114636765 -40993355 - B2_Mm1t SINE B2 -1 192 1 2 1459 593 168 115 0 chr4 114637713 114637826 -40992294 - B1_Mus2 SINE Alu -21 126 1 2 1459 1010 84 13 47 chr4 114638127 114638277 -40991843 + B1_Mus2 SINE Alu 3 147 0 2 1459 240 300 60 0 chr4 114638843 114638943 -40991177 - B1F SINE Alu -6 143 38 2 1459 631 161 194 0 chr4 114639001 114639125 -40990995 + B1_Mur2 SINE Alu 2 149 0 2 1459 32 0 0 0 chr4 114639125 114639157 -40990963 + AT_rich Low_complexity Low_complexity 1 32 0 2 1459 317 258 129 0 chr4 114640535 114640659 -40989461 + B1F SINE Alu 9 148 -1 2 1459 25 0 0 0 chr4 114640659 114640684 -40989436 + AT_rich Low_complexity Low_complexity 1 25 0 2 1459 276 232 0 28 chr4 114640684 114640755 -40989365 + ID4_ SINE ID 9 77 -6 2 1459 249 169 152 98 chr4 114641292 114641309 -40988811 + PB1D10 SINE Alu 21 117 0 2 1459 282 213 93 0 chr4 114641309 114641384 -40988736 + ID_B1 SINE B4 141 222 -2 2 1459 1429 70 16 5 chr4 114641390 114641576 -40988544 + B2_Mm2 SINE B2 4 191 -4 2 1459 1323 92 38 0 chr4 114642869 114643054 -40987066 + B2_Mm2 SINE B2 2 193 -2 2 1459 527 256 33 94 chr4 114644053 114644234 -40985886 - B3A SINE B2 -1 197 28 2 1459 777 202 92 11 chr4 114644798 114644983 -40985137 + B3 SINE B2 2 201 -15 2 1459 674 274 0 90 chr4 114645041 114645142 -40984978 + ID_B1 SINE B4 2 224 0 2 1459 888 128 0 21 chr4 114645142 114645286 -40984834 + B1_Mur4 SINE Alu 10 150 0 2 1459 693 239 7 0 chr4 114645279 114645421 -40984699 + ID_B1 SINE B4 80 222 -2 2 1459 671 234 6 61 chr4 114645437 114645601 -40984519 + RSINE1 SINE B4 11 165 0 2 1459 549 0 0 0 chr4 114645604 114645665 -40984455 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 1459 359 280 56 9 chr4 114645669 114645777 -40984343 + PB1D7 SINE Alu 1 113 -7 3 1459 278 362 0 11 chr4 114645841 114645936 -40984184 + ID_B1 SINE B4 78 171 -53 3 1459 317 312 32 11 chr4 114645857 114645951 -40984169 + PB1D10 SINE Alu 13 108 -9 3 1459 484 211 106 0 chr4 114646208 114646312 -40983808 + PB1D9 SINE Alu 2 116 -4 3 1459 284 250 66 0 chr4 114646368 114646444 -40983676 - RSINE1 SINE B4 -72 93 13 3 1459 535 259 189 0 chr4 114646462 114646647 -40983473 + B4A SINE B4 1 220 -72 3 1459 451 235 26 17 chr4 114646657 114646774 -40983346 + PB1D9 SINE Alu 3 120 0 3 1459 413 264 61 15 chr4 114646996 114647116 -40983004 + RSINE1 SINE B4 1 129 -36 3 1459 642 231 84 0 chr4 114647259 114647402 -40982718 + RSINE1 SINE B4 11 165 0 3 1459 636 198 247 0 chr4 114647536 114647698 -40982422 + Lx8 LINE L1 7265 7466 -7 3 1459 399 132 0 0 chr4 114647864 114647932 -40982188 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3 1459 311 243 1 29 chr4 114647950 114648032 -40982088 - ID4 SINE ID -60 92 13 3 1459 1075 107 6 0 chr4 114648309 114648468 -40981652 + B2_Mm2 SINE B2 2 161 -34 3 1459 192 40 0 0 chr4 114648468 114648493 -40981627 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1459 2579 63 12 0 chr4 114648701 114649035 -40981085 - L1_Mus3 LINE L1 -7 6631 6294 3 1459 503 248 35 53 chr4 114649063 114649204 -40980916 + ID_B1 SINE B4 74 217 -7 3 1459 226 318 0 0 chr4 114649482 114649545 -40980575 + 4.5SRNA scRNA scRNA 26 88 -6 3 1459 382 219 0 12 chr4 114649489 114649572 -40980548 + PB1D10 SINE Alu 36 117 0 3 1459 546 246 7 36 chr4 114649579 114649718 -40980402 + B1F SINE Alu 6 140 -9 3 1459 711 224 0 27 chr4 114649797 114649944 -40980176 + B1_Mus1 SINE Alu 1 143 -5 3 1459 194 192 19 0 chr4 114649944 114649996 -40980124 + G-rich Low_complexity Low_complexity 3 55 0 3 1459 599 266 8 8 chr4 114650061 114650190 -40979930 + RSINE1 SINE B4 4 132 -33 3 1459 776 253 41 5 chr4 114650376 114650571 -40979549 + B3 SINE B2 15 216 0 3 1459 525 76 204 28 chr4 114651029 114651137 -40978983 + B2_Mm2 SINE B2 64 190 -5 3 1459 735 138 9 0 chr4 114651243 114651359 -40978761 + B3 SINE B2 2 118 -98 3 1459 325 278 72 0 chr4 114651944 114652041 -40978079 - MLT1I LTR MaLR -15 396 293 3 1459 609 110 0 0 chr4 114652965 114653065 -40977055 + (TC)n Simple_repeat Simple_repeat 2 101 0 3 1459 513 0 0 0 chr4 114653065 114653122 -40976998 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1459 929 190 68 24 chr4 114653189 114653394 -40976726 - B3 SINE B2 -2 214 1 3 1459 597 205 142 0 chr4 114653697 114653824 -40976296 + B1_Mus2 SINE Alu 3 147 0 3 1459 376 287 109 23 chr4 114653937 114654112 -40976008 - MTEa LTR MaLR -33 346 157 3 1459 424 311 86 71 chr4 114654151 114654348 -40975772 + MLT2B2 LTR ERVL 353 552 -4 3 1459 235 279 102 39 chr4 114654386 114654591 -40975529 + L1MC LINE L1 5604 5821 -2061 3 1459 545 225 138 17 chr4 114654700 114654881 -40975239 + B3 SINE B2 12 214 -2 3 1459 631 142 9 26 chr4 114655039 114655155 -40974965 + B1_Mur3 SINE Alu 36 149 0 3 1459 198 103 16 65 chr4 114655157 114655219 -40974901 + A-rich Low_complexity Low_complexity 3 61 0 3 1459 958 222 16 0 chr4 114655311 114655505 -40974615 - B3 SINE B2 -19 197 1 3 1459 272 292 74 66 chr4 114656234 114656355 -40973765 + RSINE1 SINE B4 44 165 0 3 1459 354 252 48 19 chr4 114656770 114656875 -40973245 + PB1D10 SINE Alu 8 115 -2 3 1459 257 325 12 0 chr4 114657297 114657377 -40972743 + PB1D10 SINE Alu 6 86 -31 3 1459 232 330 32 0 chr4 114657377 114657391 -40972729 + ID_B1 SINE B4 87 183 -41 3 1459 221 294 0 29 chr4 114657434 114657504 -40972616 + ID4_ SINE ID 16 83 0 3 1459 1190 116 10 21 chr4 114657775 114657968 -40972152 + B2_Mm2 SINE B2 1 191 -4 3 1459 275 218 231 65 chr4 114658980 114659088 -40971032 - RSINE1 SINE B4 -37 128 3 3 1459 45 69 0 0 chr4 114659755 114659842 -40970278 + GC_rich Low_complexity Low_complexity 1 87 0 3 1459 283 214 159 51 chr4 114660415 114660553 -40969567 - RMER5 LTR ERV1 -123 411 259 3 1459 523 121 165 0 chr4 114660569 114660660 -40969460 + HY1 scRNA scRNA 2 107 -5 3 1459 1215 126 30 15 chr4 114660656 114660857 -40969263 + RLTR23 LTR ERV1 227 430 0 3 1459 559 196 141 12 chr4 114660857 114661027 -40969093 - RMER5 LTR ERV1 -271 263 72 3 1459 488 221 29 58 chr4 114661073 114661212 -40968908 + B1_Mur1 SINE Alu 13 147 -2 3 1459 486 236 9 0 chr4 114661247 114661357 -40968763 + ID_B1 SINE B4 113 223 -1 3 1459 617 186 129 23 chr4 114661726 114661858 -40968262 + B1_Mus2 SINE Alu 1 146 -1 3 1459 250 232 65 51 chr4 114662060 114662131 -40967989 + B4A SINE B4 84 147 -145 3 1459 278 300 0 48 chr4 114662131 114662215 -40967905 + RSINE1 SINE B4 4 83 -82 3 1459 332 164 56 0 chr4 114662210 114662278 -40967842 - B1_Mur1 SINE Alu -29 120 38 3 1459 3640 22 10 0 chr4 114662294 114662707 -40967413 - L1Md_F3 LINE L1 0 6584 6168 3 1459 317 294 12 0 chr4 114662734 114662819 -40967301 + RSINE1 SINE B4 3 88 -77 3 1459 1239 28 7 0 chr4 114662930 114663075 -40967045 + B1_Mm SINE Alu 2 147 0 3 1459 261 343 94 56 chr4 114663678 114663891 -40966229 - MLT1F LTR MaLR -216 332 112 3 1459 336 48 0 0 chr4 114664021 114664063 -40966057 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1459 216 67 0 0 chr4 114664086 114664116 -40966004 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1459 444 213 117 0 chr4 114664178 114664272 -40965848 - B1_Mur2 SINE Alu -33 116 12 3 1459 411 272 168 19 chr4 114664308 114664469 -40965651 - B4A SINE B4 -105 187 3 3 1459 282 172 15 59 chr4 114665112 114665180 -40964940 - B3 SINE B2 -149 67 3 3 1459 256 281 24 24 chr4 114665945 114666029 -40964091 - MLT1A0 LTR MaLR -73 292 209 3 1459 662 208 218 6 chr4 114666112 114666286 -40963834 + B3 SINE B2 3 213 -3 3 1459 1368 80 10 26 chr4 114666305 114666497 -40963623 + B2_Mm1a SINE B2 1 189 -4 3 1459 996 333 74 27 chr4 114666497 114666601 -40963519 - Lx9 LINE L1 -17 7456 7343 3 1459 324 0 0 0 chr4 114666601 114666637 -40963483 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1459 1395 288 61 44 chr4 114666637 114666791 -40963329 - Lx9 LINE L1 -174 7470 7192 3 1459 1996 172 55 22 chr4 114666791 114667154 -40962966 - ORR1C1 LTR MaLR -2 376 2 3 1459 1393 287 61 45 chr4 114667154 114667562 -40962558 - Lx9 LINE L1 -323 7321 6901 3 1459 297 0 0 0 chr4 114667742 114667775 -40962345 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1459 892 279 103 10 chr4 114667787 114668088 -40962032 - MTD LTR MaLR -85 334 6 3 1459 581 194 153 0 chr4 114668127 114668251 -40961869 + B1_Mur2 SINE Alu 1 143 -6 3 1459 371 162 17 0 chr4 114668263 114668376 -40961744 + GA-rich Low_complexity Low_complexity 1 114 0 3 1459 653 266 31 6 chr4 114668431 114668590 -40961530 - MLT1A0 LTR MaLR 0 365 203 3 1459 353 152 177 0 chr4 114668726 114668805 -40961315 + PB1D9 SINE Alu 21 113 -7 3 1459 28 63 0 37 chr4 114668907 114668989 -40961131 + AT_rich Low_complexity Low_complexity 1 79 0 3 1459 220 305 94 51 chr4 114670151 114670289 -40959831 + B1F2 SINE Alu 5 148 -1 3 1459 1296 104 55 0 chr4 114670290 114670473 -40959647 + B2_Mm2 SINE B2 2 194 -1 3 1459 321 113 0 0 chr4 114670674 114670696 -40959424 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1459 1046 80 72 14 chr4 114670696 114670835 -40959285 - B1_Mus2 SINE Alu 0 147 1 3 1459 321 113 0 0 chr4 114670835 114670874 -40959246 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1459 693 291 77 6 chr4 114670875 114671058 -40959062 + ID_B1 SINE B4 21 216 -8 3 1459 507 191 226 0 chr4 114671204 114671319 -40958801 - B1_Mur3 SINE Alu 0 149 9 3 1459 379 194 176 53 chr4 114671319 114671335 -40958785 - ID_B1 SINE B4 0 224 78 3 1459 437 260 106 8 chr4 114671369 114671501 -40958619 - B3A SINE B2 -53 145 1 3 1459 257 303 13 0 chr4 114671533 114671609 -40958511 - ID4_ SINE ID -6 77 1 3 1459 375 213 162 26 chr4 114671611 114671765 -40958355 - L1MC3 LINE L1 -25 7760 7586 3 1459 479 246 89 7 chr4 114672136 114672271 -40957849 - ID_B1 SINE B4 0 224 79 3 1459 225 271 224 50 chr4 114672255 114672272 -40957848 - B4A SINE B4 -55 237 184 3 1459 406 229 43 68 chr4 114672272 114672389 -40957731 - PB1D7 SINE Alu -6 114 1 3 1459 225 271 224 50 chr4 114672389 114672434 -40957686 - B4A SINE B4 -55 183 28 3 1459 247 278 140 88 chr4 114674140 114674333 -40955787 - B3 SINE B2 -3 213 11 3 1459 715 250 32 26 chr4 114674180 114674336 -40955784 - RSINE1 SINE B4 0 165 9 3 1459 521 155 53 88 chr4 114674952 114675065 -40955055 - B1_Mus1 SINE Alu -27 121 13 3 1459 308 257 0 106 chr4 114674967 114675080 -40955040 - ID_B1 SINE B4 -45 179 79 3 1459 1046 214 15 20 chr4 114675585 114675785 -40954335 - B3 SINE B2 -13 203 5 3 1459 349 276 84 25 chr4 114675790 114675909 -40954211 - PB1 SINE Alu -1 126 1 3 1459 308 330 19 9 chr4 114675932 114676039 -40954081 - PB1 SINE Alu -19 108 1 3 1459 1031 131 14 7 chr4 114676850 114676996 -40953124 - B1_Mur2 SINE Alu -1 148 2 3 1459 207 0 0 0 chr4 114677328 114677351 -40952769 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1459 513 276 147 31 chr4 114677710 114677968 -40952152 - B4A SINE B4 0 292 5 3 1459 249 293 24 35 chr4 114677987 114678072 -40952048 + RSINE1 SINE B4 3 86 -79 3 1459 21 71 0 0 chr4 114678079 114678121 -40951999 + AT_rich Low_complexity Low_complexity 1 42 0 4 1459 1373 72 16 16 chr4 114678361 114678544 -40951576 - B2_Mm2 SINE B2 -10 185 3 4 1459 713 189 53 0 chr4 114678579 114678711 -40951409 - B3A SINE B2 -59 139 1 4 1459 566 239 56 56 chr4 114678733 114678875 -40951245 - B1_Mur1 SINE Alu -7 142 1 4 1459 312 91 0 0 chr4 114679422 114679466 -40950654 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1459 4147 215 102 12 chr4 114679964 114680968 -40949152 - Lx9 LINE L1 0 7644 6551 4 1459 252 0 0 0 chr4 114681389 114681417 -40948703 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1459 23 0 0 0 chr4 114681842 114681865 -40948255 + AT_rich Low_complexity Low_complexity 1 23 0 4 1459 584 165 91 9 chr4 114682888 114682998 -40947122 - PB1D9 SINE Alu -1 119 1 4 1459 315 0 0 0 chr4 114683382 114683417 -40946703 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1459 845 211 14 0 chr4 114683519 114683666 -40946454 + B1_Mur4 SINE Alu 2 150 0 4 1459 942 156 13 20 chr4 114683699 114683849 -40946271 - B1_Mur4 SINE Alu 0 150 2 4 1459 278 279 122 28 chr4 114684263 114684370 -40945750 - PB1D10 SINE Alu 0 117 1 4 1459 525 310 7 14 chr4 114684789 114684933 -40945187 - B1F SINE Alu -6 143 1 4 1459 694 200 0 0 chr4 114685052 114685167 -40944953 - B3 SINE B2 -101 115 1 4 1459 1174 185 28 33 chr4 114685206 114685418 -40944702 - B3 SINE B2 -5 211 1 4 1459 530 215 100 36 chr4 114685608 114685748 -40944372 + B1F1 SINE Alu 1 149 0 4 1459 948 215 40 10 chr4 114685782 114685984 -40944136 - B3 SINE B2 -4 212 5 4 1459 405 0 0 0 chr4 114686194 114686239 -40943881 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1459 33 25 0 0 chr4 114686316 114686356 -40943764 + AT_rich Low_complexity Low_complexity 1 40 0 4 1459 547 231 58 23 chr4 114686365 114686538 -40943582 + B2_Mm2 SINE B2 1 179 -16 4 1459 338 261 105 26 chr4 114687075 114687189 -40942931 - MTEb LTR MaLR -200 179 57 4 1459 938 118 80 14 chr4 114687324 114687462 -40942658 - B1_Mur3 SINE Alu -2 147 1 4 1459 21 0 0 0 chr4 114687515 114687536 -40942584 + AT_rich Low_complexity Low_complexity 1 21 0 4 1459 551 207 16 40 chr4 114687546 114687672 -40942448 + B3 SINE B2 1 123 -93 4 1459 386 198 179 9 chr4 114687710 114687822 -40942298 + B1_Mur2 SINE Alu 13 143 -6 4 182 1005 181 0 7 chr4 114687906 114688056 -40942064 + B1_Mur2 SINE Alu 1 149 0 4 1460 251 312 0 13 chr4 114688090 114688168 -40941952 - PB1 SINE Alu -27 100 24 4 1460 1736 37 0 0 chr4 114688201 114688390 -40941730 - B2_Mm1t SINE B2 -3 190 2 4 1460 24 67 0 0 chr4 114688422 114688467 -40941653 + AT_rich Low_complexity Low_complexity 1 45 0 4 1460 551 281 42 21 chr4 114688965 114689107 -40941013 + RSINE1 SINE B4 2 146 -19 4 1460 183 129 0 0 chr4 114689221 114689252 -40940868 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 4 1460 387 0 0 0 chr4 114689485 114689528 -40940592 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1460 278 244 123 0 chr4 114689578 114689732 -40940388 - L1M3 LINE L1 -272 5884 5699 4 1460 202 143 0 23 chr4 114689739 114689782 -40940338 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1460 198 0 0 0 chr4 114689808 114689830 -40940290 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1460 1097 59 44 0 chr4 114689833 114689968 -40940152 - B1_Mm SINE Alu -6 141 1 4 1460 282 288 0 0 chr4 114689968 114690027 -40940093 - ID4_ SINE ID -23 60 2 4 1460 616 243 136 45 chr4 114690041 114690239 -40939881 - B3 SINE B2 0 216 1 4 1460 465 284 132 24 chr4 114690414 114690627 -40939493 - MLT1D LTR MaLR -80 425 190 4 1460 793 174 23 0 chr4 114690687 114690819 -40939301 + B1_Mus1 SINE Alu 4 138 -10 4 1460 250 299 39 0 chr4 114691132 114691209 -40938911 + ID4 SINE ID 1 80 -3 4 1460 525 16 0 0 chr4 114691398 114691460 -40938660 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1460 1339 27 0 0 chr4 114692248 114692395 -40937725 + B1_Mus2 SINE Alu 1 147 0 4 1460 261 0 0 0 chr4 114692395 114692424 -40937696 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1460 362 273 0 0 chr4 114692465 114692551 -40937569 - ID4_ SINE ID -59 93 8 4 1460 499 286 70 23 chr4 114692782 114692911 -40937209 + RSINE1 SINE B4 2 136 -29 4 1460 306 0 0 0 chr4 114692921 114692955 -40937165 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1460 890 157 8 0 chr4 114692956 114693090 -40937030 - B1_Mus1 SINE Alu -12 136 2 4 1460 428 227 238 25 chr4 114693125 114693247 -40936873 - B1_Mur1 SINE Alu 0 149 2 4 1460 504 288 61 77 chr4 114693401 114693722 -40936398 - ORR1E LTR MaLR -56 314 1 4 1460 325 302 23 23 chr4 114694433 114694521 -40935599 - MIR SINE MIR -165 97 10 4 1460 477 193 170 27 chr4 114694991 114695103 -40935017 - B1_Mur3 SINE Alu 0 149 22 4 1460 470 167 0 0 chr4 114695110 114695188 -40934932 + B1_Mur2 SINE Alu 71 148 -1 4 1460 3011 176 22 69 chr4 114695216 114695850 -40934270 - RMER19C LTR ERVK -2 609 6 4 1460 351 0 0 0 chr4 114695875 114695914 -40934206 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1460 269 333 100 44 chr4 114697101 114697261 -40932859 - MIR3 SINE MIR -3 205 37 4 1460 1548 60 22 0 chr4 114697311 114697495 -40932625 - B2_Mm2 SINE B2 -5 190 3 4 1460 331 333 57 43 chr4 114697665 114697678 -40932442 - ID_B1 SINE B4 0 224 214 4 1460 288 0 0 0 chr4 114697678 114697710 -40932410 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1460 331 333 57 43 chr4 114697710 114697837 -40932283 - ID_B1 SINE B4 -11 213 82 4 1460 2607 70 15 3 chr4 114697918 114698246 -40931874 - L1Md_T LINE L1 0 6582 6251 4 1460 431 169 0 0 chr4 114698250 114698321 -40931799 - ID4 SINE ID -12 71 1 4 1460 22 56 0 0 chr4 114698632 114698668 -40931452 + AT_rich Low_complexity Low_complexity 1 36 0 4 1460 512 219 46 23 chr4 114698733 114698864 -40931256 - B3 SINE B2 -20 196 63 4 1460 21 57 0 0 chr4 114698918 114698953 -40931167 + AT_rich Low_complexity Low_complexity 1 35 0 4 1460 240 305 0 0 chr4 114699236 114699295 -40930825 - B4 SINE B4 -18 274 216 4 1460 320 247 0 24 chr4 114699514 114699597 -40930523 - L1MB8 LINE L1 -13 6165 6085 4 1460 1213 54 161 0 chr4 114699625 114699793 -40930327 - B2_Mm2 SINE B2 0 195 1 4 1460 539 243 178 0 chr4 114699816 114699968 -40930152 - B4 SINE B4 -113 179 1 4 1460 522 154 33 98 chr4 114699999 114700012 -40930108 + MT2B LTR ERVL 151 155 -446 4 1460 1100 62 21 0 chr4 114700012 114700156 -40929964 + B1_Mus1 SINE Alu 2 148 0 4 1460 801 197 22 0 chr4 114700347 114700484 -40929636 - B1_Mus1 SINE Alu -8 140 1 4 1460 279 0 0 0 chr4 114700662 114700693 -40929427 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1460 477 216 214 8 chr4 114700702 114700819 -40929301 - RSINE1 SINE B4 -24 141 1 4 1460 198 0 0 0 chr4 114700964 114700986 -40929134 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 1460 249 284 48 16 chr4 114701243 114701349 -40928771 + B1F SINE Alu 34 143 -6 4 1460 283 268 172 42 chr4 114701359 114701636 -40928484 + L1MB8 LINE L1 5673 6005 -173 4 1460 1147 182 78 0 chr4 114701777 114701969 -40928151 + B3 SINE B2 2 208 -8 4 1460 522 232 311 24 chr4 114702721 114702933 -40927187 + B4A SINE B4 2 274 -18 4 1460 825 135 53 0 chr4 114703088 114703221 -40926899 - B1_Mus1 SINE Alu -8 140 1 4 1460 737 236 7 0 chr4 114703365 114703509 -40926611 - B1_Mur3 SINE Alu 0 149 5 4 1460 198 0 0 0 chr4 114703832 114703854 -40926266 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1460 298 290 66 85 chr4 114703877 114703975 -40926145 + MER113A DNA MER1_type 1 92 -222 4 1460 729 263 113 0 chr4 114703975 114704169 -40925951 - B3 SINE B2 0 216 1 4 1460 298 290 66 85 chr4 114704169 114704281 -40925839 + MER113A DNA MER1_type 93 207 -107 4 1460 204 40 0 0 chr4 114704453 114704478 -40925642 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 4 1460 842 175 42 0 chr4 114704478 114704621 -40925499 - B1_Mur4 SINE Alu -1 149 1 4 1460 267 204 20 0 chr4 114704625 114704674 -40925446 - B4A SINE B4 -86 206 157 4 1460 585 252 38 8 chr4 114704874 114705006 -40925114 - B1F SINE Alu -8 141 6 4 1460 3468 69 61 27 chr4 114705535 114706010 -40924110 - Lx3_Mus LINE L1 -5 7004 6514 4 1460 652 196 32 71 chr4 114706071 114706225 -40923895 - B1_Mur3 SINE Alu -1 148 1 4 1460 340 222 146 15 chr4 114706225 114706362 -40923758 - L1MA7 LINE L1 -44 6247 6093 4 1460 1150 112 0 0 chr4 114706708 114706851 -40923269 + B1_Mus1 SINE Alu 1 143 -5 4 1460 206 320 64 77 chr4 114707122 114707342 -40922778 - L2a LINE L2 -174 3252 3036 4 1460 224 204 15 84 chr4 114707395 114707423 -40922697 - B4 SINE B4 -219 73 1 4 1460 276 189 94 0 chr4 114707423 114707476 -40922644 - B3 SINE B2 -158 58 1 4 1460 189 0 0 0 chr4 114707784 114707805 -40922315 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1460 324 296 70 32 chr4 114708228 114708385 -40921735 + MIR SINE MIR 79 241 -21 4 1460 312 274 92 17 chr4 114708537 114708656 -40921464 - MTEa LTR MaLR -226 153 26 4 1460 237 33 0 0 chr4 114708862 114708892 -40921228 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 1460 730 168 42 0 chr4 114708895 114709014 -40921106 - B1_Mur4 SINE Alu -26 124 1 4 1460 435 206 60 5 chr4 114709212 114709431 -40920689 - RCHARR1 DNA MER1_type -1 973 680 4 1460 656 142 186 0 chr4 114709429 114709542 -40920578 - B1_Mus2 SINE Alu 0 147 14 4 1460 896 231 27 109 chr4 114709541 114709798 -40920322 - RCHARR1 DNA MER1_type -603 371 136 4 1460 229 216 59 0 chr4 114709817 114709868 -40920252 - B1F2 SINE Alu -72 77 24 5 1460 623 260 82 31 chr4 114709874 114710033 -40920087 + B3A SINE B2 1 167 -31 5 1460 620 268 99 10 chr4 114710060 114710252 -40919868 + B3 SINE B2 1 209 -7 5 1460 1241 75 0 0 chr4 114710339 114710486 -40919634 + B1_Mus2 SINE Alu 1 147 0 5 1460 22 56 0 0 chr4 114711589 114711625 -40918495 + AT_rich Low_complexity Low_complexity 1 36 0 5 1460 331 247 71 0 chr4 114712146 114712231 -40917889 - B3 SINE B2 -125 91 1 5 1460 1739 36 0 0 chr4 114712387 114712580 -40917540 + B2_Mm1t SINE B2 1 193 0 5 1460 265 66 48 32 chr4 114712701 114712764 -40917356 + (TCTCC)n Simple_repeat Simple_repeat 1 64 0 5 1460 335 224 276 0 chr4 114712768 114712866 -40917254 - RSINE1 SINE B4 -40 125 1 5 1460 468 300 27 0 chr4 114712927 114713037 -40917083 + B3 SINE B2 103 215 -1 5 1460 219 167 400 0 chr4 114713131 114713191 -40916929 - B1F SINE Alu -49 100 17 5 1460 231 287 16 0 chr4 114713238 114713367 -40916753 + T-rich Low_complexity Low_complexity 1 131 0 5 1460 210 181 52 21 chr4 114713303 114713399 -40916721 + (GTTTG)n Simple_repeat Simple_repeat 1 99 0 5 1460 314 196 186 0 chr4 114713399 114713496 -40916624 - PB1D10 SINE Alu -2 115 1 5 1460 913 140 21 29 chr4 114714642 114714782 -40915338 - B1_Mur4 SINE Alu -10 140 2 5 1460 216 146 0 154 chr4 114714996 114715061 -40915059 - BC1_Mm scRNA scRNA -94 58 4 5 1460 260 214 8 18 chr4 114715067 114715150 -40914970 - B1_Mus2 SINE Alu -6 114 37 5 1460 229 276 34 11 chr4 114715150 114715238 -40914882 - L1MD3 LINE L1 -77 7918 7829 5 1460 276 197 132 29 chr4 114715289 114715357 -40914763 - ID4 SINE ID -7 76 2 5 1460 256 294 77 118 chr4 114715442 114715662 -40914458 - L1MD2 LINE L1 -353 6006 5796 5 1460 180 111 0 0 chr4 114715695 114715722 -40914398 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1460 647 200 0 0 chr4 114715835 114715950 -40914170 - B1_Mur3 SINE Alu -2 147 33 5 1460 1298 47 0 0 chr4 114715967 114716115 -40914005 - B1_Mus1 SINE Alu 0 148 1 5 1460 315 0 0 0 chr4 114716360 114716395 -40913725 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1460 667 221 64 7 chr4 114716443 114716584 -40913536 + B1_Mur2 SINE Alu 1 149 0 5 1460 189 0 0 0 chr4 114716592 114716613 -40913507 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 5 1460 1226 101 59 6 chr4 114716899 114717069 -40913051 + B2_Mm1t SINE B2 1 179 -14 5 1460 334 106 361 11 chr4 114717116 114717206 -40912914 + B2_Mm2 SINE B2 47 171 -24 5 1460 189 269 28 69 chr4 114717651 114717723 -40912397 + L2a LINE L2 3275 3343 -32 5 1460 857 182 7 33 chr4 114718901 114719054 -40911066 + B1_Mur2 SINE Alu 1 149 0 5 1460 258 56 0 0 chr4 114719055 114719091 -40911029 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 5 1460 378 94 0 0 chr4 114719886 114719950 -40910170 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1460 468 0 0 0 chr4 114719950 114720001 -40910119 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1460 541 276 106 0 chr4 114721275 114721445 -40908675 - ID_B1 SINE B4 -36 188 1 5 1460 203 288 95 14 chr4 114721498 114721572 -40908548 + L2a LINE L2 3347 3426 0 5 1460 180 339 32 40 chr4 114721755 114721881 -40908239 + L2a LINE L2 3284 3408 -18 5 1460 250 237 235 10 chr4 114721919 114722017 -40908103 - MIRc SINE MIR -42 226 107 5 1460 188 259 106 47 chr4 114722517 114722602 -40907518 - MIR3 SINE MIR -17 191 102 5 1460 641 321 117 42 chr4 114722843 114723263 -40906857 - L1ME1 LINE L1 -8 6171 5715 5 1460 648 194 70 21 chr4 114723263 114723405 -40906715 - B1_Mur2 SINE Alu 0 149 1 5 1460 641 321 117 42 chr4 114723405 114723694 -40906426 - L1ME1 LINE L1 -465 5714 5409 5 1460 419 78 16 0 chr4 114724321 114724385 -40905735 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 5 1460 190 217 141 28 chr4 114724399 114724470 -40905650 - MER5A DNA MER1_type -3 186 108 5 1460 274 283 164 21 chr4 114724743 114724911 -40905209 - MIR SINE MIR -64 198 16 5 1460 846 0 0 0 chr4 114725997 114726091 -40904029 + (TTTCC)n Simple_repeat Simple_repeat 3 96 0 5 1460 2781 48 2 48 chr4 114726091 114726488 -40903632 - L1_Mus3 LINE L1 -2 6636 6258 5 1460 21 0 0 0 chr4 114727135 114727156 -40902964 + AT_rich Low_complexity Low_complexity 1 21 0 5 1460 689 159 23 8 chr4 114727158 114727291 -40902829 - B1_Mur4 SINE Alu 0 150 16 5 1460 21 0 0 0 chr4 114727373 114727394 -40902726 + AT_rich Low_complexity Low_complexity 1 21 0 5 1460 719 223 139 35 chr4 114727401 114727573 -40902547 + B3 SINE B2 1 190 -26 5 1460 627 249 181 4 chr4 114727573 114727666 -40902454 - Lx8 LINE L1 -219 7254 7157 5 1460 222 37 0 0 chr4 114727666 114727693 -40902427 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1460 627 249 181 4 chr4 114727693 114727825 -40902295 - Lx8 LINE L1 -317 7156 6989 5 1460 371 245 10 19 chr4 114727836 114727940 -40902180 - B1F2 SINE Alu -9 140 38 5 1460 191 346 51 80 chr4 114728101 114728239 -40901881 + MIR SINE MIR 26 159 -103 5 1460 23 0 0 0 chr4 114728325 114728348 -40901772 + AT_rich Low_complexity Low_complexity 1 23 0 5 1460 932 138 0 7 chr4 114728357 114728503 -40901617 + B1_Mus2 SINE Alu 1 145 -2 5 1460 233 256 0 0 chr4 114728562 114728626 -40901494 - ID2 SINE ID -62 90 27 5 1460 333 62 0 0 chr4 114731630 114731678 -40898442 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1460 216 0 0 0 chr4 114732399 114732423 -40897697 + (TGGGGG)n Simple_repeat Simple_repeat 5 28 0 5 1460 469 358 25 6 chr4 114733946 114734106 -40896014 + RSINE1 SINE B4 3 165 0 5 1460 322 294 65 0 chr4 114734268 114734360 -40895760 - PB1D10 SINE Alu -11 106 9 5 1460 1110 98 85 11 chr4 114734612 114734755 -40895365 + B2_Mm2 SINE B2 3 145 -50 5 1460 306 0 0 0 chr4 114734755 114734789 -40895331 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1460 207 100 0 0 chr4 114734789 114734818 -40895302 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1460 1110 98 85 11 chr4 114734818 114734849 -40895271 + B2_Mm2 SINE B2 146 190 -5 5 1460 24 0 0 0 chr4 114736029 114736053 -40894067 + GC_rich Low_complexity Low_complexity 1 24 0 5 1460 441 0 0 0 chr4 114736998 114737047 -40893073 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1460 360 0 0 0 chr4 114737797 114737837 -40892283 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1460 434 315 78 24 chr4 114738449 114738615 -40891505 - MIRb SINE MIR -9 259 85 5 1460 214 246 28 84 chr4 114739824 114739895 -40890225 + L2a LINE L2 3261 3327 -99 5 1460 935 65 0 0 chr4 114739914 114740037 -40890083 + B1_Mus1 SINE Alu 18 140 -8 5 1460 243 0 0 0 chr4 114740037 114740064 -40890056 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1460 450 0 0 0 chr4 114740070 114740120 -40890000 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1460 779 157 0 48 chr4 114740419 114740556 -40889564 + B1_Mur2 SINE Alu 5 136 -13 5 1460 540 0 0 0 chr4 114740556 114740616 -40889504 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1460 22 0 0 0 chr4 114743377 114743399 -40886721 + GC_rich Low_complexity Low_complexity 1 22 0 5 1460 473 280 35 71 chr4 114744736 114744905 -40885215 - B3 SINE B2 0 216 54 5 1460 384 279 50 55 chr4 114744987 114745169 -40884951 - L2a LINE L2 -6 3420 3240 5 1460 181 143 0 0 chr4 114745926 114745954 -40884166 - L4 LINE RTE -294 1735 1708 5 1460 261 0 0 0 chr4 114746207 114746236 -40883884 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1460 961 229 57 0 chr4 114746243 114746453 -40883667 - ID_B1 SINE B4 -1 223 2 5 1460 223 312 180 38 chr4 114746613 114746796 -40883324 + L2c LINE L2 3141 3349 -38 5 1460 381 305 66 116 chr4 114747481 114747722 -40882398 + MIRb SINE MIR 20 248 -20 5 1460 476 329 84 0 chr4 114748905 114749072 -40881048 + MER3 DNA MER1_type 14 194 -15 5 1460 552 100 0 0 chr4 114749806 114749886 -40880234 + (CTA)n Simple_repeat Simple_repeat 1 80 0 5 1460 4222 175 61 27 chr4 114749892 114750058 -40880062 - Lx9 LINE L1 -6 7638 7478 5 1460 699 35 0 0 chr4 114750058 114750144 -40879976 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1460 4222 175 61 27 chr4 114750144 114750906 -40879214 - Lx9 LINE L1 -167 7477 6678 5 1460 207 0 0 0 chr4 114752542 114752565 -40877555 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 5 1460 351 230 0 0 chr4 114753091 114753178 -40876942 + (CATA)n Simple_repeat Simple_repeat 2 88 0 5 1460 450 200 0 0 chr4 114753178 114753263 -40876857 - B1_Mur2 SINE Alu -56 93 9 5 1460 240 294 14 113 chr4 114753182 114753324 -40876796 - MT2B LTR ERVL -357 244 117 5 1460 426 39 0 0 chr4 114753367 114753419 -40876701 + (TTA)n Simple_repeat Simple_repeat 2 53 0 5 1460 339 336 0 28 chr4 114753428 114753535 -40876585 - PB1D10 SINE Alu -13 104 1 5 1460 315 155 0 0 chr4 114753614 114753665 -40876455 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1460 360 0 0 0 chr4 114753665 114753705 -40876415 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1460 315 155 0 0 chr4 114753705 114753711 -40876409 + (TA)n Simple_repeat Simple_repeat 1 6 0 5 1460 286 327 139 30 chr4 114754008 114754339 -40875781 - L2a LINE L2 -147 3279 2913 5 1460 776 239 17 22 chr4 114755099 114755279 -40874841 - B3A SINE B2 -15 183 5 5 1460 368 277 98 23 chr4 114755290 114755423 -40874697 - B1F1 SINE Alu -6 143 1 5 1460 441 295 21 64 chr4 114756328 114756392 -40873728 - RSINE1 SINE B4 -29 136 80 5 1460 2256 66 30 39 chr4 114756392 114756722 -40873398 + ORR1A2 LTR MaLR 1 327 0 5 1460 441 295 21 64 chr4 114756722 114756798 -40873322 - RSINE1 SINE B4 -86 79 2 5 1460 532 323 56 18 chr4 114756798 114757148 -40872972 - Charlie4a DNA MER1_type -54 454 51 5 1460 2368 15 0 0 chr4 114758591 114758863 -40871257 + MERVL-int LTR ERVL 1903 2174 -3311 5 1460 432 0 0 0 chr4 114759411 114759459 -40870661 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1460 220 324 79 22 chr4 114762264 114762403 -40867717 + MIRc SINE MIR 81 227 -41 6 1460 197 275 159 0 chr4 114764000 114764069 -40866051 - MIRm SINE MIR -172 104 25 6 1460 192 152 0 0 chr4 114765340 114765373 -40864747 + GA-rich Low_complexity Low_complexity 1 33 0 6 1460 486 0 0 0 chr4 114766660 114766714 -40863406 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1460 369 0 0 0 chr4 114766714 114766754 -40863366 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1460 185 296 73 59 chr4 114767188 114767292 -40862828 + MIRm SINE MIR 20 126 -142 6 1460 477 189 0 0 chr4 114770040 114770135 -40859985 + GA-rich Low_complexity Low_complexity 2 96 0 6 1460 281 250 107 0 chr4 114770143 114770227 -40859893 - PB1D7 SINE Alu -27 93 1 6 1460 280 284 0 26 chr4 114770362 114770438 -40859682 + GA-rich Low_complexity Low_complexity 1 74 0 6 1460 484 235 91 91 chr4 114770799 114770986 -40859134 + B3A SINE B2 2 188 -10 6 1460 477 135 27 0 chr4 114771072 114771146 -40858974 - RLTR14 LTR ERV1 0 382 307 6 1460 1579 229 114 148 chr4 114771159 114771565 -40858555 + RMER1C Other Other 709 1046 -296 6 1460 3357 70 8 6 chr4 114771565 114772037 -40858083 + L1_Mus3 LINE L1 6165 6637 -1 6 1460 1579 229 114 148 chr4 114772037 114772286 -40857834 + RMER1C Other Other 1047 1342 0 6 1460 2939 189 34 151 chr4 114772308 114773162 -40856958 - Lx7 LINE L1 -338 7358 6605 6 1460 572 176 68 60 chr4 114773162 114773295 -40856825 + B1_Mur1 SINE Alu 10 143 -6 6 1460 333 0 0 0 chr4 114773295 114773332 -40856788 + (CATA)n Simple_repeat Simple_repeat 2 38 0 6 1460 213 39 0 0 chr4 114775024 114775050 -40855070 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1460 426 342 113 40 chr4 114775333 114775607 -40854513 - MLT1J LTR MaLR -47 465 172 6 1460 877 212 199 0 chr4 114775686 114775922 -40854198 + B4A SINE B4 3 285 -7 6 1460 239 63 29 87 chr4 114775967 114776036 -40854084 + (CAGAGA)n Simple_repeat Simple_repeat 6 70 0 6 1460 855 86 0 0 chr4 114776056 114776195 -40853925 + (GA)n Simple_repeat Simple_repeat 2 140 0 6 1460 401 208 0 25 chr4 114777180 114777259 -40852861 - U1 snRNA snRNA -88 77 1 6 1460 531 0 0 0 chr4 114777410 114777469 -40852651 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1460 442 283 0 0 chr4 114777502 114777594 -40852526 - PB1D10 SINE Alu -23 94 3 6 1460 1104 43 58 0 chr4 114777809 114777947 -40852173 - B1_Mm SINE Alu 0 147 2 6 1460 1693 26 0 5 chr4 114777970 114778164 -40851956 - B2_Mm1t SINE B2 0 193 1 6 1460 1291 247 7 37 chr4 114778422 114778720 -40851400 + B4 SINE B4 1 289 -3 6 1460 504 32 0 0 chr4 114778763 114778825 -40851295 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1460 24 53 0 0 chr4 114778828 114778866 -40851254 + AT_rich Low_complexity Low_complexity 1 38 0 6 1460 422 183 0 58 chr4 114779274 114779361 -40850759 - RLTR14 LTR ERV1 -41 341 260 6 1460 1670 36 0 0 chr4 114779364 114779556 -40850564 - B2_Mm1t SINE B2 -1 192 1 6 1460 1813 210 76 61 chr4 114779561 114779653 -40850467 - RMER19C LTR ERVK -34 577 481 6 1460 6253 41 21 4 chr4 114779653 114780407 -40849713 + L1Md_F2 LINE L1 5816 6582 0 6 1460 1813 212 71 55 chr4 114780407 114780888 -40849232 - RMER19C LTR ERVK -131 480 42 6 1460 974 110 49 0 chr4 114780889 114781053 -40849067 - RMER19C LTR ERVK -439 172 1 6 1460 467 256 69 19 chr4 114781637 114781796 -40848324 + RMER15 LTR ERVL 220 386 -189 6 1460 1270 191 88 50 chr4 114781796 114781951 -40848169 + ORR1D1 LTR MaLR 1 176 -198 6 1460 507 17 0 0 chr4 114781951 114782011 -40848109 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1460 1270 191 88 50 chr4 114782011 114782196 -40847924 + ORR1D1 LTR MaLR 177 354 -20 6 1460 317 286 0 74 chr4 114782185 114782306 -40847814 + RMER15 LTR ERVL 464 575 0 6 1460 958 111 7 34 chr4 114782864 114783013 -40847107 - B1_Mur3 SINE Alu 0 149 5 6 1460 21 36 0 0 chr4 114783025 114783053 -40847067 + AT_rich Low_complexity Low_complexity 1 28 0 6 1460 235 333 101 0 chr4 114785911 114786010 -40844110 + LTR78 LTR ERV1 254 362 -942 6 1460 442 213 0 0 chr4 114786874 114786968 -40843152 - B1F2 SINE Alu -4 145 52 6 1460 1356 91 16 16 chr4 114786983 114787173 -40842947 + B2_Mm2 SINE B2 1 190 -5 6 1460 752 204 63 40 chr4 114787348 114787522 -40842598 + B3A SINE B2 5 182 -16 6 1460 1130 65 0 23 chr4 114787714 114787887 -40842233 + (TCCCC)n Simple_repeat Simple_repeat 3 171 0 6 1460 707 62 0 10 chr4 114787888 114787986 -40842134 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 6 1460 545 246 92 0 chr4 114787989 114788119 -40842001 - B1_Mur2 SINE Alu -6 143 2 6 1460 243 0 0 0 chr4 114788336 114788363 -40841757 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1460 1169 62 0 0 chr4 114788363 114788507 -40841613 - B1_Mus2 SINE Alu -2 145 2 6 1460 1371 249 174 21 chr4 114789305 114790234 -40839886 + L1MA7 LINE L1 4827 5902 -389 6 1460 538 230 158 9 chr4 114790302 114790517 -40839603 + L1MA7 LINE L1 6018 6264 -27 6 1460 369 0 0 0 chr4 114790594 114790635 -40839485 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1460 288 246 200 43 chr4 114790635 114790775 -40839345 - RSINE1 SINE B4 -1 164 3 6 1460 228 204 0 0 chr4 114790775 114790829 -40839291 - B4A SINE B4 -234 58 5 6 1460 742 196 7 22 chr4 114791406 114791542 -40838578 - B1_Mur3 SINE Alu -13 136 3 6 1460 267 31 0 0 chr4 114793269 114793301 -40836819 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1460 280 276 82 71 chr4 114793479 114793662 -40836458 + Lx8 LINE L1 7279 7463 -10 6 1460 501 181 0 0 chr4 114793675 114793758 -40836362 + B3 SINE B2 1 83 -133 6 1460 278 253 87 78 chr4 114793740 114793843 -40836277 - B1_Mm SINE Alu -43 104 1 6 1460 374 212 47 0 chr4 114794983 114795068 -40835052 + Lx9 LINE L1 7252 7340 -304 6 1460 477 127 0 0 chr4 114795127 114795206 -40834914 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1460 541 165 149 0 chr4 114795244 114795365 -40834755 + Lx9 LINE L1 7358 7496 -148 6 1460 1027 127 29 11 chr4 114797407 114797582 -40832538 + B2_Mm2 SINE B2 7 184 -11 6 1460 274 288 108 25 chr4 114797592 114797795 -40832325 - Lx7 LINE L1 -17 7679 7460 6 1460 717 298 5 0 chr4 114797795 114797986 -40832134 - Lx7 LINE L1 -384 7312 7121 6 1460 264 253 29 88 chr4 114798109 114798259 -40831861 - MIR SINE MIR -103 159 20 6 1460 252 0 0 0 chr4 114798655 114798683 -40831437 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1460 224 306 152 10 chr4 114798683 114798782 -40831338 - B1_Mur1 SINE Alu 0 149 37 6 1460 556 255 71 65 chr4 114798693 114798861 -40831259 - B4 SINE B4 -76 216 48 6 1460 4009 130 33 0 chr4 114800387 114800988 -40829132 - Lx4A LINE L1 -162 6896 6276 6 1460 259 339 22 52 chr4 114800989 114801123 -40828997 - MLT1H LTR MaLR -56 493 364 6 1460 237 307 50 50 chr4 114801225 114801345 -40828775 - MLT1H LTR MaLR -303 186 67 6 1460 581 284 49 34 chr4 114801429 114801633 -40828487 - MLT1F1 LTR MaLR 0 569 363 6 1460 418 49 16 0 chr4 114801633 114801694 -40828426 + MusHAL1 LINE L1 2025 2086 -626 6 1460 1363 86 11 11 chr4 114802008 114802197 -40827923 - B2_Mm1t SINE B2 -4 189 1 6 1460 29 78 0 0 chr4 114802431 114802495 -40827625 + AT_rich Low_complexity Low_complexity 1 64 0 6 1460 1772 134 10 46 chr4 114802497 114802803 -40827317 + ORR1A2 LTR MaLR 14 308 -19 6 1460 262 233 198 0 chr4 114803016 114803102 -40827018 + PB1D10 SINE Alu 10 112 -5 6 1460 1048 230 14 5 chr4 114803250 114803464 -40826656 - B3 SINE B2 0 216 1 6 1460 317 24 0 23 chr4 114803470 114803513 -40826607 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 1460 204 226 0 0 chr4 114803598 114803651 -40826469 + A-rich Low_complexity Low_complexity 1 53 0 6 1460 2088 137 123 32 chr4 114803827 114804363 -40825757 - RLTR21 LTR ERVK -619 953 369 6 1460 686 149 25 0 chr4 114804370 114804491 -40825629 + Lx4A LINE L1 6933 7056 -2 6 1460 209 33 0 32 chr4 114804506 114804537 -40825583 + (TAA)n Simple_repeat Simple_repeat 1 30 0 6 1460 701 196 22 8 chr4 114804553 114804687 -40825433 + B1_Mus1 SINE Alu 2 137 -11 6 1460 730 253 132 0 chr4 114804837 114805019 -40825101 + B3 SINE B2 11 216 0 6 1460 398 310 24 48 chr4 114805031 114805197 -40824923 + L1M2 LINE L1 5621 5782 -530 6 1460 582 205 60 0 chr4 114805199 114805316 -40824804 + B1F SINE Alu 3 126 -23 6 1460 668 130 0 9 chr4 114805374 114805490 -40824630 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 6 1460 193 0 94 0 chr4 114805579 114805611 -40824509 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 6 1460 307 344 31 8 chr4 114807098 114807227 -40822893 - MER63D DNA AcHobo -698 363 232 6 1460 1131 75 7 7 chr4 114807781 114807929 -40822191 + B1_Mus1 SINE Alu 1 148 0 6 1460 26 30 0 0 chr4 114807938 114807971 -40822149 + AT_rich Low_complexity Low_complexity 1 33 0 6 1460 450 0 0 0 chr4 114808017 114808067 -40822053 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1460 24 77 0 0 chr4 114808252 114808304 -40821816 + AT_rich Low_complexity Low_complexity 1 52 0 6 1460 264 257 27 13 chr4 114808444 114808519 -40821601 - RSINE1 SINE B4 -85 80 5 6 1460 2289 189 55 96 chr4 114808531 114808789 -40821331 - RMER1C Other Other -1 1341 1073 6 1460 1004 151 6 0 chr4 114808789 114808968 -40821152 + CT-rich Low_complexity Low_complexity 1 180 0 6 1460 249 33 0 0 chr4 114808976 114809006 -40821114 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 6 1460 1163 58 0 0 chr4 114809009 114809148 -40820972 - B1_Mus2 SINE Alu -7 140 2 6 1460 3366 114 2 14 chr4 114809154 114809650 -40820470 - Lx LINE L1 -2 6652 6163 6 1460 2289 189 55 96 chr4 114809650 114809932 -40820188 - RMER1C Other Other -270 1072 804 6 1460 1193 241 20 8 chr4 114809933 114810188 -40819932 - Lx6 LINE L1 -290 7170 6913 6 1460 29 78 0 0 chr4 114810439 114810503 -40819617 + AT_rich Low_complexity Low_complexity 1 64 0 6 1460 382 114 12 12 chr4 114811362 114811442 -40818678 + (CAA)n Simple_repeat Simple_repeat 2 81 0 6 1460 732 89 0 18 chr4 114812066 114812180 -40817940 - L1_Mus1 LINE L1 0 6567 6456 7 1460 409 108 21 21 chr4 114812306 114812401 -40817719 + (TCTCTG)n Simple_repeat Simple_repeat 4 98 0 7 1460 861 199 23 6 chr4 114812633 114812805 -40817315 + RMER4B LTR ERVK 370 544 -41 7 1460 563 323 29 29 chr4 114813779 114813983 -40816137 + B3 SINE B2 9 212 -4 7 1460 23 33 0 0 chr4 114816124 114816154 -40813966 + AT_rich Low_complexity Low_complexity 1 30 0 7 182 38153 21 2 7 chr4 114816214 114821425 -40808695 + L1Md_A LINE L1 405 5586 -297 7 1461 8417 41 2 0 chr4 114821425 114822419 -40807701 + L1Md_T LINE L1 5587 6582 0 7 1461 225 65 0 0 chr4 114823038 114823069 -40807051 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1461 603 148 0 0 chr4 114823069 114823204 -40806916 + (GA)n Simple_repeat Simple_repeat 2 136 0 7 1461 203 224 41 0 chr4 114823204 114823253 -40806867 + GA-rich Low_complexity Low_complexity 6 56 0 7 1461 24 0 0 0 chr4 114823896 114823920 -40806200 + AT_rich Low_complexity Low_complexity 1 24 0 7 1461 362 169 42 0 chr4 114824061 114824132 -40805988 + B3 SINE B2 2 75 -141 7 1461 698 264 25 17 chr4 114825304 114825543 -40804577 + MLT1B LTR MaLR 18 258 -132 7 1461 220 169 33 33 chr4 114827342 114827403 -40802717 + A-rich Low_complexity Low_complexity 5 65 0 7 1461 1306 181 89 63 chr4 114828269 114828617 -40801503 + Lx4B LINE L1 6701 7057 -1 7 1461 1104 59 0 0 chr4 114829529 114829665 -40800455 + B1_Mm SINE Alu 2 137 -10 7 1461 3269 190 94 50 chr4 114829819 114830799 -40799321 - RLTR13A LTR ERVK 0 1033 11 7 1461 7715 111 42 24 chr4 114830822 114832513 -40797607 - ETnERV3-int LTR ERVK -1173 6071 4752 7 1461 21439 84 24 34 chr4 114832483 114835907 -40794213 - ETnERV3-int LTR ERVK -2115 3693 306 7 1461 198 0 0 0 chr4 114835907 114835929 -40794191 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 1461 32850 51 1 5 chr4 114835934 114837215 -40792905 - L1Md_F2 LINE L1 -14 6568 5301 7 1461 5259 70 0 0 chr4 114837215 114837891 -40792229 - L1Md_T LINE L1 0 6582 5907 7 1461 32850 74 7 3 chr4 114837891 114842914 -40787206 - L1Md_F2 LINE L1 -583 5300 250 7 1461 6513 100 3 14 chr4 114842915 114844160 -40785960 - L1VL2 LINE L1 -2321 1294 66 7 1461 22 0 0 0 chr4 114844163 114844185 -40785935 + AT_rich Low_complexity Low_complexity 1 22 0 7 1461 519 255 57 0 chr4 114844190 114844331 -40785789 + B1F2 SINE Alu 1 149 0 7 1461 1064 217 22 9 chr4 114844408 114844621 -40785499 + MTD LTR MaLR 1 216 -203 7 1461 2207 64 30 20 chr4 114844621 114844925 -40785195 + IAPLTR2b LTR ERVK 1 307 -20 7 1461 742 238 81 47 chr4 114844901 114845135 -40784985 + MTD LTR MaLR 170 411 -8 7 1461 1680 296 75 101 chr4 114845140 114845547 -40784573 + MTD-int LTR MaLR 2 431 -827 7 1461 2060 125 6 58 chr4 114845547 114845894 -40784226 - ORR1A4 LTR MaLR 0 329 1 7 1461 1680 296 75 101 chr4 114845894 114846210 -40783910 + MTD-int LTR MaLR 432 721 -537 7 1461 369 0 0 0 chr4 114846210 114846251 -40783869 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1461 411 21 0 0 chr4 114846251 114846298 -40783822 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1461 1630 130 70 4 chr4 114846298 114846569 -40783551 + Lx LINE L1 6362 6650 -4 7 1461 1680 296 75 101 chr4 114846569 114846897 -40783223 + MTD-int LTR MaLR 722 1027 -231 7 1461 589 252 116 14 chr4 114846961 114847208 -40782912 - RMER20B LTR ERVK -42 474 205 7 1461 512 111 63 0 chr4 114847238 114847364 -40782756 + (CAGAGA)n Simple_repeat Simple_repeat 3 136 0 7 1461 245 83 15 118 chr4 114848101 114848130 -40781990 + T-rich Low_complexity Low_complexity 39 65 0 7 1461 1387 95 11 0 chr4 114848130 114848319 -40781801 - B2_Mm1t SINE B2 -2 191 1 7 1461 245 83 15 118 chr4 114848319 114848357 -40781763 + T-rich Low_complexity Low_complexity 5 38 0 7 1461 204 67 0 0 chr4 114848366 114848396 -40781724 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 7 1461 2532 226 103 71 chr4 114848533 114849395 -40780725 + RLTR13D6 LTR ERVK 1 890 -12 7 1461 489 241 17 0 chr4 114849557 114849673 -40780447 + RMER1B Other Other 595 712 -354 7 1461 449 240 0 0 chr4 114849852 114849952 -40780168 + RMER1C Other Other 28 127 -1215 7 1461 675 37 0 0 chr4 114850028 114850110 -40780010 + (TC)n Simple_repeat Simple_repeat 1 82 0 7 1461 1184 58 0 0 chr4 114850110 114850264 -40779856 - MTA_Mm LTR MaLR -242 154 1 7 1461 28220 120 10 1 chr4 114850264 114855689 -40774431 + L1_Mus3 LINE L1 1027 6501 -137 7 1461 20252 112 9 32 chr4 114855679 114855885 -40774235 - L1Md_F LINE L1 -1268 4615 4441 7 1461 1004 73 43 7 chr4 114855885 114856023 -40774097 - B1_Mm SINE Alu 0 147 5 7 1461 20252 118 18 28 chr4 114856023 114859942 -40770178 - L1Md_F LINE L1 -1443 4440 532 7 1461 3459 142 98 51 chr4 114860965 114861210 -40768910 - RLTR33 LTR ERVK -2 676 430 7 1461 3346 45 0 0 chr4 114861210 114861606 -40768514 - MTA_Mm LTR MaLR 0 396 1 7 1461 9430 30 0 0 chr4 114861606 114862704 -40767416 - MTA_Mm-int LTR MaLR 0 1098 1 7 1461 3372 35 2 0 chr4 114862704 114863099 -40767021 - MTA_Mm LTR MaLR 0 396 1 7 1461 3459 142 98 51 chr4 114863099 114863497 -40766623 - RLTR33 LTR ERVK -249 429 3 7 1461 1680 172 77 3 chr4 114863893 114864284 -40765836 + L1VL2 LINE L1 556 975 -5360 7 1461 6472 53 1 6 chr4 114864279 114865145 -40764975 - L1Md_F2 LINE L1 -819 5064 4203 7 1461 3891 57 0 0 chr4 114865146 114865654 -40764466 + L1Md_F2 LINE L1 5079 5586 -297 7 1461 8275 35 1 3 chr4 114865655 114866640 -40763480 + L1Md_F2 LINE L1 5588 6570 -12 7 1461 1496 141 34 0 chr4 114866651 114866949 -40763171 + MusHAL1 LINE L1 40 347 -2365 7 1461 2531 172 2 18 chr4 114866950 114867452 -40762668 + L1_Mur1 LINE L1 4646 5139 -747 7 1461 226 111 28 0 chr4 114867479 114867515 -40762605 + L1Md_F LINE L1 187 223 -6393 7 1461 15903 86 3 3 chr4 114867511 114870576 -40759544 + L1Md_F LINE L1 503 3567 -2316 7 1461 1325 117 144 16 chr4 114870574 114870817 -40759303 + Lx LINE L1 5985 6258 -396 7 1461 284 316 20 0 chr4 114870992 114871090 -40759030 - MLT1B LTR MaLR -288 102 3 7 1461 891 188 108 27 chr4 114871228 114871456 -40758664 + RLTR21 LTR ERVK 962 1199 -373 7 1461 447 19 0 0 chr4 114871487 114871539 -40758581 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1461 1181 217 33 129 chr4 114872194 114872609 -40757511 - RLTR21 LTR ERVK -118 1454 1145 7 1461 249 33 0 0 chr4 114872609 114872639 -40757481 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 7 1461 1181 223 44 173 chr4 114872639 114872873 -40757247 - RLTR21 LTR ERVK -428 1144 936 7 1461 1576 210 51 14 chr4 114872876 114873256 -40756864 + RLTR20B3 LTR ERVK 70 453 -124 7 1461 33085 78 8 4 chr4 114873258 114878805 -40751315 + L1Md_F2 LINE L1 257 5784 -99 7 1461 2701 48 6 0 chr4 114878805 114879141 -40750979 - MTA_Mm LTR MaLR -58 338 1 7 1461 22 43 0 21 chr4 114879231 114879254 -40750866 + AT_rich Low_complexity Low_complexity 1 23 0 7 1461 6304 54 1 1 chr4 114879254 114880049 -40750071 + L1Md_F2 LINE L1 5783 6577 -5 7 1461 22 43 0 21 chr4 114880049 114880072 -40750048 + AT_rich Low_complexity Low_complexity 1 23 0 7 1461 604 239 0 42 chr4 114880072 114880216 -40749904 + RLTR20B3 LTR ERVK 440 577 0 7 1461 2551 141 32 63 chr4 114880216 114880683 -40749437 - RLTR21 LTR ERVK -630 942 498 7 1461 285 29 0 0 chr4 114880683 114880717 -40749403 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1461 2551 141 32 63 chr4 114880717 114880749 -40749371 - RLTR21 LTR ERVK -1075 497 461 7 1461 3818 142 47 0 chr4 114880751 114881413 -40748707 + L1_Mm LINE L1 5176 5868 -15 7 1461 4072 117 30 16 chr4 114881421 114882049 -40748071 + Lx LINE L1 6015 6651 -3 7 1461 2676 150 56 7 chr4 114882049 114882498 -40747622 - RLTR21 LTR ERVK -1101 471 1 7 1461 2916 66 5 71 chr4 114882946 114883175 -40746945 - MTA_Mm LTR MaLR 0 396 184 7 1461 1182 68 0 0 chr4 114883175 114883321 -40746799 - B1_Mus2 SINE Alu 0 147 2 7 1461 2916 66 5 71 chr4 114883321 114883515 -40746605 - MTA_Mm LTR MaLR -213 183 1 7 1461 6978 81 37 70 chr4 114883515 114884651 -40745469 - MTA_Mm-int LTR MaLR 0 1098 1 7 1461 2969 77 18 3 chr4 114884651 114885041 -40745079 - MTA_Mm LTR MaLR 0 396 1 7 1461 232 246 0 15 chr4 114885214 114885280 -40744840 - Lx6 LINE L1 -136 7324 7260 7 1461 2752 79 44 8 chr4 114885292 114885676 -40744444 - MTB LTR MaLR -2 398 1 7 1461 290 144 99 11 chr4 114885686 114885777 -40744343 + Lx6 LINE L1 7344 7442 -18 7 1461 591 201 62 25 chr4 114885844 114886023 -40744097 - B3 SINE B2 -6 189 9 7 1461 20340 24 1 1 chr4 114886216 114889690 -40740430 - L1Md_T LINE L1 -2 6580 3108 7 1461 1322 40 6 0 chr4 114889772 114889949 -40740171 + RLTR1C LTR ERV1 1 178 -325 7 1461 522 69 0 0 chr4 114889948 114890020 -40740100 + RLTR1C LTR ERV1 534 605 0 7 1461 1917 132 42 33 chr4 114893206 114893543 -40736577 + MT2B LTR ERVL 1 340 -261 7 1461 11505 99 30 6 chr4 114893543 114896145 -40733975 + L1VL2 LINE L1 1 2639 -976 7 1461 4902 90 14 5 chr4 114896409 114897078 -40733042 + Lx3_Mus LINE L1 6313 6987 -22 7 1461 2580 70 8 11 chr4 114897078 114897442 -40732678 + L1VL2 LINE L1 2627 2989 -626 7 1461 22 0 0 0 chr4 114897591 114897613 -40732507 + AT_rich Low_complexity Low_complexity 1 22 0 7 1461 1185 43 0 0 chr4 114897679 114897817 -40732303 - B1_Mm SINE Alu -9 138 1 7 1461 21 57 0 0 chr4 114897922 114897957 -40732163 + AT_rich Low_complexity Low_complexity 1 35 0 7 1461 33 94 0 0 chr4 114898113 114898209 -40731911 + AT_rich Low_complexity Low_complexity 1 96 0 7 1461 1251 154 10 0 chr4 114898209 114898417 -40731703 + MT2B LTR ERVL 327 536 -65 7 1461 568 237 9 0 chr4 114898457 114898571 -40731549 - B1_Mm SINE Alu -32 115 1 7 1461 1673 187 54 14 chr4 114898963 114899319 -40730801 + ORR1B2 LTR MaLR 1 359 0 7 1461 2534 170 2 38 chr4 114900360 114900838 -40729282 + RMER6B LTR ERVK 1 461 0 7 1461 1917 58 0 0 chr4 114900903 114901164 -40728956 + RLTR10A LTR ERVK 1 261 -150 7 1461 950 90 8 0 chr4 114901148 114901282 -40728838 + RLTR27 LTR ERVK 175 309 0 7 1461 624 279 18 0 chr4 114901282 114901447 -40728673 + Lx8 LINE L1 6650 6817 -656 7 1461 22 0 0 0 chr4 114901478 114901500 -40728620 + AT_rich Low_complexity Low_complexity 1 22 0 7 1461 1551 246 111 30 chr4 114901554 114902023 -40728097 - Lx8 LINE L1 0 7473 6967 7 1461 315 0 0 0 chr4 114902026 114902061 -40728059 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1461 380 232 67 57 chr4 114902062 114902167 -40727953 - Lx8 LINE L1 -178 7295 7190 7 1461 832 178 113 36 chr4 114902625 114902828 -40727292 + Lx9 LINE L1 5475 5732 -1728 7 1461 1350 288 95 10 chr4 114902839 114903297 -40726823 + Lx9 LINE L1 6097 6731 -913 7 1461 758 239 8 0 chr4 114903297 114903427 -40726693 + ETnERV2-int LTR ERVK 7072 7202 -204 7 1461 4647 46 32 2 chr4 114903762 114904332 -40725788 - LTRIS_Mus LTR ERV1 0 587 1 7 1461 1452 293 5 39 chr4 114904382 114904607 -40725513 + Lx9 LINE L1 6740 6966 -678 7 1461 3707 83 87 19 chr4 114904607 114905135 -40724985 + LTRIS2 LTR ERV1 1 564 0 7 1461 1452 293 5 39 chr4 114905135 114905318 -40724802 + Lx9 LINE L1 6967 7134 -510 7 1461 4106 152 67 26 chr4 114905319 114906186 -40723934 - RLTR13D6 LTR ERVK 0 902 1 7 1461 579 347 92 4 chr4 114906188 114906513 -40723607 + Lx9 LINE L1 7132 7485 -159 7 1461 300 111 0 0 chr4 114906513 114906567 -40723553 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1461 579 347 92 4 chr4 114906567 114906696 -40723424 + Lx9 LINE L1 7486 7625 -19 7 1461 22 0 0 0 chr4 114906711 114906733 -40723387 + AT_rich Low_complexity Low_complexity 1 22 0 7 1461 593 210 64 14 chr4 114906738 114906878 -40723242 + B1_Mm SINE Alu 1 147 0 7 1461 1533 254 32 17 chr4 114906962 114907367 -40722753 + MTD LTR MaLR 1 411 -8 7 1461 911 192 228 52 chr4 114907372 114907674 -40722446 + MTD-int LTR MaLR 2 356 -902 7 1461 2066 107 9 58 chr4 114907680 114908026 -40722094 - ORR1A4 LTR MaLR 0 329 1 8 1461 1642 240 100 4 chr4 114908026 114908495 -40721625 + Lx9 LINE L1 7125 7638 -6 8 1461 2331 220 30 61 chr4 114908501 114909139 -40720981 + MTD-int LTR MaLR 412 1029 -229 7 1461 437 285 148 31 chr4 114909242 114909541 -40720579 - RMER20B LTR ERVK -91 425 97 8 1461 509 187 10 123 chr4 114909645 114909840 -40720280 + MTD-int LTR MaLR 1021 1193 -65 7 1461 5821 156 9 29 chr4 114909915 114910949 -40719171 - Lx3B LINE L1 -1 6972 5960 8 1461 1284 187 89 63 chr4 114915183 114915531 -40714589 - Lx4B LINE L1 -1 7057 6701 8 1461 8157 42 8 6 chr4 114915882 114916875 -40713245 - L1Md_F2 LINE L1 -1 6581 5587 8 1461 438 20 0 0 chr4 114917117 114917168 -40712952 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 8 1461 670 280 25 16 chr4 114918975 114919218 -40710902 - MLT1B LTR MaLR -132 258 14 8 1461 331 183 42 0 chr4 114920351 114920422 -40709698 - B3 SINE B2 -141 75 2 8 1461 23 0 0 0 chr4 114920563 114920586 -40709534 + AT_rich Low_complexity Low_complexity 1 23 0 8 1461 203 227 15 0 chr4 114921221 114921287 -40708833 + CT-rich Low_complexity Low_complexity 1 67 0 8 1461 265 41 82 0 chr4 114921294 114921343 -40708777 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 8 1461 622 291 23 69 chr4 114924194 114924380 -40705740 - B3 SINE B2 0 216 37 8 1461 1687 26 0 0 chr4 114924380 114924572 -40705548 - B2_Mm1t SINE B2 0 193 2 8 1461 622 291 23 69 chr4 114924572 114924603 -40705517 - B3 SINE B2 -180 36 9 8 1461 830 183 24 6 chr4 114925594 114925759 -40704361 - RMER4B LTR ERVK -41 544 377 8 1461 217 49 98 0 chr4 114926000 114926041 -40704079 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 8 1461 656 82 18 35 chr4 114926170 114926284 -40703836 + L1_Mus1 LINE L1 6456 6567 0 8 1461 195 191 0 0 chr4 114926923 114926986 -40703134 + T-rich Low_complexity Low_complexity 1 63 0 8 1461 34971 70 6 10 chr4 114927647 114932885 -40697235 + L1Md_F2 LINE L1 412 5589 -297 8 1461 8153 46 3 6 chr4 114932885 114933877 -40696243 + L1Md_F2 LINE L1 5590 6578 -7 8 1461 1693 152 116 3 chr4 114934066 114934256 -40695864 - ORR1B2 LTR MaLR -8 359 170 8 1461 396 0 0 0 chr4 114934256 114934300 -40695820 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1461 1693 152 116 3 chr4 114934300 114934419 -40695701 - ORR1B2 LTR MaLR -198 169 16 8 1461 1222 161 104 110 chr4 114934736 114934814 -40695306 + RMER1C Other Other 998 1073 -269 8 1461 3014 132 31 2 chr4 114934814 114935291 -40694829 + Lx LINE L1 6163 6653 -1 8 1461 1222 164 98 110 chr4 114935291 114935565 -40694555 + RMER1C Other Other 987 1330 -12 8 1461 222 284 27 13 chr4 114935574 114935649 -40694471 + RSINE1 SINE B4 5 80 -85 8 1461 33 56 0 0 chr4 114935789 114935843 -40694277 + AT_rich Low_complexity Low_complexity 1 54 0 8 1461 1333 241 60 18 chr4 114935946 114936279 -40693841 - Lx9 LINE L1 -180 7464 7118 8 1461 481 279 0 0 chr4 114936283 114936394 -40693726 - MTC-int LTR MaLR -843 415 305 8 1461 22 35 0 0 chr4 114936395 114936424 -40693696 + AT_rich Low_complexity Low_complexity 1 29 0 8 1461 3200 160 31 32 chr4 114936424 114937039 -40693081 - Lx4A LINE L1 -1 7057 6444 8 1461 4673 171 36 44 chr4 114937039 114938030 -40692090 - RLTR13C1 LTR ERVK 0 983 1 8 1461 5133 151 34 1 chr4 114938032 114938866 -40691254 - Lx4A LINE L1 -611 6447 5587 8 1461 7604 93 33 13 chr4 114938879 114939674 -40690446 - L1VL2 LINE L1 -1471 2144 1328 8 1461 420 37 0 0 chr4 114939674 114939728 -40690392 + (CTAGT)n Simple_repeat Simple_repeat 5 58 0 8 1461 7604 100 25 13 chr4 114939728 114940330 -40689790 - L1VL2 LINE L1 -2288 1327 725 8 1461 2836 41 18 3 chr4 114940330 114940671 -40689449 + ORR1A0 LTR MaLR 1 346 0 8 1461 3636 115 5 12 chr4 114940671 114940911 -40689209 - L1VL2 LINE L1 -5611 724 485 8 1461 1017 76 8 3 chr4 114940913 114941071 -40689049 + RLTR13D3 LTR ERVK 330 498 -616 8 1461 2994 49 0 0 chr4 114941071 114941436 -40688684 - L1Md_F2 LINE L1 -12 6570 6206 8 1461 581 164 43 90 chr4 114941436 114941465 -40688655 + RLTR13D3 LTR ERVK 485 508 -475 8 1461 28581 55 34 1 chr4 114941465 114946299 -40683821 + L1Md_F3 LINE L1 409 5585 -298 8 1461 8425 47 2 1 chr4 114946300 114947283 -40682837 + L1Md_F3 LINE L1 5587 6570 -14 8 1461 1771 138 20 20 chr4 114947303 114947600 -40682520 + RLTR13D3 LTR ERVK 818 1114 0 8 1461 633 27 0 0 chr4 114947644 114947719 -40682401 + (TCC)n Simple_repeat Simple_repeat 2 76 0 8 1461 353 271 18 27 chr4 114947719 114947829 -40682291 + ETnERV3-int LTR ERVK 67 175 -7231 8 1461 2667 236 37 90 chr4 114947884 114949103 -40681017 + ETnERV3-int LTR ERVK 175 1209 -4599 8 1461 309 126 125 7 chr4 114949104 114949117 -40681003 + polypurine Low_complexity Low_complexity 4 16 0 8 1461 1040 89 0 43 chr4 114949117 114949305 -40680815 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 8 1461 309 126 125 7 chr4 114949305 114949427 -40680693 + GA-rich Low_complexity Low_complexity 17 154 0 8 1461 267 191 68 68 chr4 114949610 114949683 -40680437 + ETnERV3-int LTR ERVK 4955 5027 -3190 8 182 3751 210 56 17 chr4 114950016 114950831 -40679289 + ETnERV3-int LTR ERVK 4934 5780 -28 8 1462 4932 170 38 45 chr4 114950839 114951829 -40678291 + RLTR13C1 LTR ERVK 1 983 0 8 1462 1676 132 44 0 chr4 114951829 114952102 -40678018 + Lx4A LINE L1 6444 6728 -330 8 1462 2524 60 24 0 chr4 114952103 114952438 -40677682 - RLTR13D6 LTR ERVK -237 569 227 8 1462 3014 148 30 20 chr4 114952411 114952949 -40677171 - RLTR13D6 LTR ERVK -359 543 1 8 1462 1300 198 50 153 chr4 114953251 114953425 -40676695 + ORR1D1 LTR MaLR 1 156 -218 8 1462 549 0 0 0 chr4 114953425 114953486 -40676634 + (TC)n Simple_repeat Simple_repeat 1 61 0 8 1462 1300 198 50 153 chr4 114953486 114953673 -40676447 + ORR1D1 LTR MaLR 157 318 -56 8 1462 2432 132 73 50 chr4 114953673 114954137 -40675983 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1462 1300 198 50 153 chr4 114954137 114954191 -40675929 + ORR1D1 LTR MaLR 319 374 0 8 1462 508 137 0 20 chr4 114954211 114954314 -40675806 - L1_Mur2 LINE L1 -1632 4254 4150 8 1462 8036 125 22 12 chr4 114954314 114956563 -40673557 + L1_Mus1 LINE L1 4736 7054 -4 8 1462 321 26 0 0 chr4 114956564 114956602 -40673518 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1462 1597 174 60 7 chr4 114956622 114956922 -40673198 - RMER12 LTR ERVK -1006 316 1 8 1462 486 0 0 0 chr4 114957043 114957097 -40673023 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1462 285 98 0 0 chr4 114957097 114957138 -40672982 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 8 1462 3837 254 80 27 chr4 114957242 114958674 -40671446 + RMER1B Other Other 1 1066 0 8 1462 629 230 87 92 chr4 114959016 114959212 -40670908 - B3A SINE B2 0 198 4 8 1462 189 0 0 0 chr4 114960557 114960578 -40669542 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 8 1462 330 258 30 40 chr4 114960602 114960703 -40669417 - B2_Mm2 SINE B2 -94 101 2 8 1462 1274 105 47 0 chr4 114960703 114960874 -40669246 - B2_Mm1t SINE B2 -14 179 1 8 1462 3765 99 28 6 chr4 114960916 114961752 -40668368 - Lx LINE L1 -557 6451 5250 8 1462 2912 170 4 4 chr4 114961747 114962266 -40667854 + L1_Mur2 LINE L1 4691 5209 -668 8 1462 252 219 162 74 chr4 114963130 114963278 -40666842 - MLT1E1A LTR MaLR -363 317 157 8 1462 284 299 164 49 chr4 114963167 114963350 -40666770 - MLT2C1 LTR ERVL -193 204 1 8 1462 862 304 73 45 chr4 114963611 114964152 -40665968 - ERVL-B4-int LTR ERVL -233 5528 4861 8 1462 27 0 0 0 chr4 114964319 114964346 -40665774 + AT_rich Low_complexity Low_complexity 1 27 0 8 1462 7410 94 35 17 chr4 114964396 114965952 -40664168 + L1_Mus3 LINE L1 5047 6638 0 8 1462 324 294 20 0 chr4 114966144 114966246 -40663874 - ERVL-int LTR ERVL -5146 611 508 8 1462 1068 109 0 0 chr4 114966293 114966449 -40663671 - L1VL4 LINE L1 -5648 654 499 8 1462 760 207 0 0 chr4 114966598 114966733 -40663387 + B1_Mur3 SINE Alu 2 136 -13 8 1462 306 0 0 0 chr4 114966733 114966767 -40663353 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 1462 5088 136 53 11 chr4 114966844 114967650 -40662470 + Lx3B LINE L1 6131 6970 -3 8 1462 188 136 23 0 chr4 114967655 114967668 -40662452 + A-rich Low_complexity Low_complexity 2 14 0 8 1462 1249 75 0 0 chr4 114967668 114967815 -40662305 + B1_Mm SINE Alu 1 147 0 8 1462 188 136 23 0 chr4 114967815 114967845 -40662275 + A-rich Low_complexity Low_complexity 15 45 0 8 1462 342 0 0 0 chr4 114968004 114968042 -40662078 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8 1462 1192 107 6 0 chr4 114968043 114968211 -40661909 - Lx3B LINE L1 -244 6729 6561 8 1462 1213 41 0 0 chr4 114968448 114968593 -40661527 + L1Md_A LINE L1 6437 6581 -1 8 1462 1168 148 165 0 chr4 114969039 114969221 -40660899 - B3 SINE B2 -4 212 1 8 1462 1283 252 138 3 chr4 114970051 114970327 -40659793 + ORR1D2 LTR MaLR 1 306 -64 8 1462 4660 55 0 4 chr4 114970327 114970874 -40659246 + L1Md_F2 LINE L1 6024 6568 -14 8 1462 1283 252 138 3 chr4 114970874 114970923 -40659197 + ORR1D2 LTR MaLR 307 368 -2 8 1462 213 301 124 35 chr4 114971044 114971213 -40658907 - MIRc SINE MIR -79 189 6 8 1462 666 264 0 26 chr4 114973114 114973266 -40656854 - B1F SINE Alu 0 149 2 8 1462 717 45 0 0 chr4 114974856 114974945 -40655175 + (GGAGA)n Simple_repeat Simple_repeat 3 91 0 8 1462 407 355 57 42 chr4 114975572 114975784 -40654336 - MTE2b LTR MaLR -114 265 51 8 1462 33 0 0 0 chr4 114975831 114975864 -40654256 + AT_rich Low_complexity Low_complexity 1 33 0 8 1462 677 53 11 0 chr4 114976683 114976777 -40653343 + (CA)n Simple_repeat Simple_repeat 1 95 0 8 1462 337 281 39 10 chr4 114976777 114976881 -40653239 - Lx7 LINE L1 -384 7312 7206 8 1462 339 25 0 0 chr4 114976933 114976973 -40653147 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 8 1462 303 259 17 0 chr4 114976993 114977017 -40653103 + MusHAL1 LINE L1 1215 1239 -4644 8 1462 1499 81 24 5 chr4 114977017 114977229 -40652891 + L1Md_F2 LINE L1 6365 6580 -2 8 1462 560 115 11 0 chr4 114977229 114977323 -40652797 + MusHAL1 LINE L1 1240 1336 -2579 8 1462 279 0 0 0 chr4 114977323 114977354 -40652766 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 8 1462 271 138 0 36 chr4 114977356 114977439 -40652681 - Lx7 LINE L1 -166 7530 7451 8 1462 6284 160 26 12 chr4 114977436 114977986 -40652134 - Lx7 LINE L1 -1708 5988 5425 8 1462 4156 94 4 0 chr4 114977986 114978519 -40651601 - L1_Mus4 LINE L1 -10 6626 6092 8 1462 6284 151 14 15 chr4 114978519 114979174 -40650946 - Lx7 LINE L1 -456 5424 4765 8 1462 248 200 125 0 chr4 114979161 114979241 -40650879 - L1M2 LINE L1 -3309 2834 2745 8 1462 25 31 0 0 chr4 114979363 114979395 -40650725 + AT_rich Low_complexity Low_complexity 1 32 0 8 1462 21 89 0 0 chr4 114979530 114979586 -40650534 + AT_rich Low_complexity Low_complexity 1 56 0 8 1462 8465 34 1 7 chr4 114980184 114980725 -40649395 - L1Md_A LINE L1 -3 6579 6044 8 1462 2330 82 23 67 chr4 114980725 114981067 -40649053 + IAPLTR2b LTR ERVK 1 327 0 8 1462 11162 27 0 1 chr4 114981067 114982510 -40647610 - L1Md_A LINE L1 -539 6043 4601 8 1462 38436 47 2 14 chr4 114982510 114988666 -40641454 - L1Md_A LINE L1 0 6582 505 8 1462 340 261 11 0 chr4 114988763 114988851 -40641269 + PB1D10 SINE Alu 27 115 -2 8 1462 670 99 116 41 chr4 114988995 114989142 -40640978 - MusHAL1 LINE L1 -1789 923 766 8 1462 28682 101 17 30 chr4 114989140 114993301 -40636819 - L1Md_F2 LINE L1 0 6582 2381 9 1462 5662 45 0 11 chr4 114993301 114993958 -40636162 - L1Md_F2 LINE L1 0 6582 5933 9 1462 28682 113 16 37 chr4 114993958 114995461 -40634659 - L1Md_F2 LINE L1 -3503 2380 419 9 1462 238 225 341 0 chr4 114995466 114995595 -40634525 - L1_Mur3 LINE L1 -1083 4797 4625 9 1462 186 71 0 0 chr4 114995601 114995629 -40634491 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1462 8518 162 92 31 chr4 114995670 114996465 -40633655 - L1_Mur3 LINE L1 -2646 3234 2421 9 1462 2279 90 3 7 chr4 114996465 114996767 -40633353 + L1Md_A LINE L1 6282 6582 0 9 1462 8518 162 92 31 chr4 114996767 114997088 -40633032 - L1_Mur3 LINE L1 -3460 2420 2071 9 1462 444 19 0 0 chr4 114997088 114997141 -40632979 + (TGG)n Simple_repeat Simple_repeat 1 53 0 9 1462 8518 168 84 51 chr4 114997141 114998641 -40631479 - L1_Mur3 LINE L1 -3810 2070 505 9 1462 225 163 0 0 chr4 115002955 115003004 -40627116 + GA-rich Low_complexity Low_complexity 1 49 0 1 1462 2684 156 87 20 chr4 115003596 115003824 -40626296 + Lx4B LINE L1 6499 6763 -295 2 1462 504 0 0 0 chr4 115003824 115003880 -40626240 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1462 2684 161 86 20 chr4 115003880 115004156 -40625964 + Lx4B LINE L1 6764 7027 -31 2 1462 333 182 13 0 chr4 115004156 115004233 -40625887 + Lx9 LINE L1 7567 7644 0 4 1462 294 312 74 21 chr4 115004233 115004247 -40625873 + Lx4B LINE L1 6961 6973 0 2 1462 4943 144 11 15 chr4 115005747 115006532 -40623588 + L1VL2 LINE L1 109 890 -5445 5 1462 5921 144 58 18 chr4 115006532 115008266 -40621854 + L1Md_F LINE L1 218 2022 -1795 6 1462 28 29 0 0 chr4 115008304 115008339 -40621781 + AT_rich Low_complexity Low_complexity 1 35 0 7 1462 2544 28 0 6 chr4 115008921 115009247 -40620873 + ORR1A0 LTR MaLR 23 346 0 8 1462 36068 35 0 0 chr4 115009853 115015237 -40614883 + L1Md_T LINE L1 109 5589 -297 9 1462 8979 11 0 4 chr4 115015237 115016237 -40613883 + L1Md_T LINE L1 5590 6585 0 9 1462 38705 32 1 0 chr4 115017063 115024523 -40605597 - L1Md_T LINE L1 0 6585 1 1 1462 3315 52 2 0 chr4 115025766 115026173 -40603947 - L1Md_F3 LINE L1 -474 6110 5703 1 1462 3879 42 6 6 chr4 115026173 115026650 -40603470 + L1Md_F3 LINE L1 6108 6584 0 1 1462 938 98 0 20 chr4 115026674 115026820 -40603300 + B1_Mus1 SINE Alu 6 148 0 1 1462 206 321 141 12 chr4 115027042 115027212 -40602908 + MIRc SINE MIR 20 211 -57 1 1462 6769 94 6 23 chr4 115027901 115028869 -40601251 - L1_Mus2 LINE L1 -2 6564 5613 1 1462 497 50 0 0 chr4 115028869 115028929 -40601191 - L1_Mus2 LINE L1 -415 5468 5409 1 1462 5087 52 1 0 chr4 115028922 115029627 -40600493 - L1Md_F2 LINE L1 -386 6199 5494 1 1462 14994 72 0 6 chr4 115029625 115032477 -40597643 - L1Md_F2 LINE L1 -2683 3203 273 1 1462 3599 159 36 39 chr4 115032471 115033886 -40596234 - L1VL4 LINE L1 -4107 1776 385 1 1462 180 0 0 0 chr4 115034124 115034144 -40595976 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1462 1323 87 22 0 chr4 115034711 115034895 -40595225 - B2_Mm1t SINE B2 -4 189 2 1 1462 29 28 0 0 chr4 115034917 115034953 -40595167 + AT_rich Low_complexity Low_complexity 1 36 0 1 1462 25 51 0 0 chr4 115036244 115036283 -40593837 + AT_rich Low_complexity Low_complexity 1 39 0 2 1462 3073 282 98 28 chr4 115036830 115037956 -40592164 - Lx8 LINE L1 -47 7426 6218 2 1462 4956 130 18 1 chr4 115037956 115038681 -40591439 + RMER19A LTR ERVK 1 737 0 2 1462 3073 282 98 28 chr4 115038681 115038771 -40591349 - Lx8 LINE L1 -1256 6217 6125 2 1462 452 229 8 25 chr4 115039206 115039327 -40590793 + RMER1C Other Other 1223 1341 -1 2 1462 3435 63 2 2 chr4 115039423 115039851 -40590269 - L1_Mus1 LINE L1 -3 6564 6137 2 1462 967 133 32 0 chr4 115039897 115040055 -40590065 - MTC LTR MaLR -58 363 201 2 1462 2413 119 11 5 chr4 115040055 115040427 -40589693 - L1_Mus3 LINE L1 0 6638 6265 2 1462 213 154 0 0 chr4 115041214 115041253 -40588867 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 1462 413 298 48 47 chr4 115041403 115041701 -40588419 - RLTR12B LTR ERVK -246 322 14 2 1462 603 274 61 49 chr4 115042146 115042492 -40587628 + RLTR15 LTR ERVK 1 350 -9 2 1462 2360 103 11 20 chr4 115042605 115042963 -40587157 + L1_Mus4 LINE L1 6275 6629 -7 3 1462 21 36 0 0 chr4 115042963 115042991 -40587129 + AT_rich Low_complexity Low_complexity 1 28 0 3 1462 501 17 0 0 chr4 115043122 115043180 -40586940 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1462 612 0 0 0 chr4 115043180 115043248 -40586872 + (GAAAA)n Simple_repeat Simple_repeat 5 72 0 3 1462 1818 96 8 8 chr4 115043821 115044084 -40586036 + L1Md_F3 LINE L1 5620 5882 -702 3 1462 2194 106 3 6 chr4 115044085 115044418 -40585702 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1462 56239 23 16 6 chr4 115044420 115050830 -40579290 - IAPEz-int LTR ERVK -2 6479 6 3 1462 2194 106 3 6 chr4 115050830 115051163 -40578957 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1462 5818 42 0 6 chr4 115051163 115051863 -40578257 + L1Md_F3 LINE L1 5876 6571 -13 3 1462 33205 78 2 5 chr4 115051894 115056496 -40573624 - L1Md_F3 LINE L1 -585 5999 1414 3 1462 22231 34 2 2 chr4 115056475 115059806 -40570314 - L1Md_T LINE L1 0 6582 3252 3 1462 4481 162 9 23 chr4 115059809 115060799 -40569321 - L1Md_F3 LINE L1 -4488 1395 446 3 1462 2623 171 220 30 chr4 115060909 115061651 -40568469 - ORR1A2-int LTR MaLR -709 1083 201 3 1462 348 59 59 0 chr4 115061626 115061677 -40568443 - ORR1A2 LTR MaLR -273 54 1 3 1462 207 0 0 0 chr4 115062046 115062069 -40568051 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1462 2042 213 129 7 chr4 115062271 115062862 -40567258 + Lx5 LINE L1 6387 7050 0 4 1462 534 195 221 0 chr4 115062905 115063035 -40567085 + Lx5 LINE L1 6223 6373 -677 4 1462 630 0 0 0 chr4 115063035 115063105 -40567015 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1462 534 195 221 0 chr4 115063105 115063128 -40566992 + Lx5 LINE L1 6374 6409 -641 4 1462 926 191 55 30 chr4 115064526 115064726 -40565394 + RMER19B LTR ERVK 311 515 -387 4 1462 1691 278 25 19 chr4 115064839 115065315 -40564805 - Lx8 LINE L1 -795 6678 6200 4 1462 387 0 0 0 chr4 115065315 115065358 -40564762 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1462 642 136 0 0 chr4 115065358 115065490 -40564630 + (GA)n Simple_repeat Simple_repeat 1 132 0 4 1462 628 293 83 38 chr4 115065494 115065990 -40564130 - Lx9 LINE L1 -1543 6153 5647 4 1462 190 247 134 61 chr4 115066032 115066114 -40564006 + L2c LINE L2 3300 3387 0 4 1462 562 302 50 159 chr4 115066788 115067071 -40563049 - MLT1B LTR MaLR 0 390 128 4 1462 1465 224 0 0 chr4 115067071 115067321 -40562799 + Lx5 LINE L1 6796 7045 -5 4 1462 562 302 50 159 chr4 115067321 115067458 -40562662 - MLT1B LTR MaLR -263 127 16 4 1462 633 61 0 0 chr4 115067785 115067867 -40562253 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1462 3894 67 11 13 chr4 115068412 115068953 -40561167 - RLTR13D1 LTR ERVK -33 773 234 5 1462 2890 146 25 20 chr4 115068951 115069461 -40560659 - RLTR13D6 LTR ERVK -389 513 1 5 1462 959 219 60 169 chr4 115069762 115069934 -40560186 + ORR1C2 LTR MaLR 1 166 -218 5 1462 633 80 0 0 chr4 115069934 115070022 -40560098 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1462 959 219 60 169 chr4 115070022 115070262 -40559858 + ORR1C2 LTR MaLR 167 368 -16 5 1462 521 110 0 0 chr4 115070342 115070415 -40559705 - L1_Mur2 LINE L1 -1655 4222 4150 5 1462 2562 176 82 0 chr4 115070445 115070899 -40559221 + RMER1B Other Other 576 1066 0 5 1462 585 249 85 91 chr4 115071236 115071435 -40558685 - B3A SINE B2 0 198 1 5 1462 445 120 12 12 chr4 115072781 115072865 -40557255 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 5 1462 263 49 0 24 chr4 115072865 115072907 -40557213 - B2_Mm2 SINE B2 -18 177 137 5 1462 341 200 52 21 chr4 115072897 115073007 -40557113 - B2_Mm2 SINE B2 -102 114 2 6 1462 1286 99 47 0 chr4 115073007 115073178 -40556942 - B2_Mm1t SINE B2 -14 179 1 6 1462 7001 115 31 11 chr4 115073688 115075051 -40555069 - Lx LINE L1 -9 6645 5253 6 1462 2639 190 8 6 chr4 115075048 115075566 -40554554 + L1_Mur2 LINE L1 4691 5209 -668 6 1462 248 259 174 23 chr4 115076427 115076605 -40553515 - MLT1E3 LTR MaLR -362 318 65 6 1462 1210 317 60 26 chr4 115076996 115077617 -40552503 - ERVL-B4-int LTR ERVL -386 5328 4687 6 1462 2835 116 2 0 chr4 115077693 115078106 -40552014 + L1_Mm LINE L1 5047 5460 -423 6 1462 1963 103 11 14 chr4 115078106 115078392 -40551728 + L1_Mus3 LINE L1 6354 6638 0 6 1462 1079 109 0 0 chr4 115078764 115078920 -40551200 - L1VL4 LINE L1 -5648 654 499 6 1462 795 207 0 0 chr4 115079069 115079204 -40550916 + B1_Mur3 SINE Alu 2 136 -13 6 1462 243 0 0 0 chr4 115079204 115079231 -40550889 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 1462 5364 135 28 11 chr4 115079310 115080135 -40549985 + Lx3B LINE L1 6131 6969 -4 7 1462 1277 48 7 0 chr4 115080154 115080300 -40549820 + B1_Mm SINE Alu 1 147 0 7 1462 295 70 40 40 chr4 115080301 115080375 -40549745 + A-rich Low_complexity Low_complexity 3 76 0 7 182 8054 70 1 10 chr4 115080538 115081526 -40548594 + L1Md_F2 LINE L1 5587 6565 -17 7 1463 1183 108 18 0 chr4 115081572 115081738 -40548382 - Lx3B LINE L1 -244 6729 6561 7 1463 1097 170 165 0 chr4 115082151 115082333 -40547787 - B3 SINE B2 -4 212 1 7 1463 1421 258 98 3 chr4 115083137 115083475 -40546645 + ORR1D2 LTR MaLR 1 370 0 7 1463 257 301 125 30 chr4 115083599 115083767 -40546353 - MIRc SINE MIR -79 189 6 7 1463 666 264 0 26 chr4 115085669 115085821 -40544299 - B1F SINE Alu 0 149 2 7 1463 282 56 0 0 chr4 115087409 115087445 -40542675 + (GGGGA)n Simple_repeat Simple_repeat 5 40 0 8 1463 1397 45 0 11 chr4 115087445 115087627 -40542493 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1463 421 350 57 42 chr4 115088245 115088457 -40541663 - MTE2b LTR MaLR -114 265 51 8 1463 213 121 0 0 chr4 115088461 115088494 -40541626 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1463 30 0 0 0 chr4 115088513 115088543 -40541577 + AT_rich Low_complexity Low_complexity 1 30 0 8 1463 494 31 16 0 chr4 115089386 115089450 -40540670 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1463 335 281 39 10 chr4 115089450 115089554 -40540566 - Lx7 LINE L1 -384 7312 7206 8 1463 231 36 0 0 chr4 115089606 115089634 -40540486 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 8 1463 285 242 11 0 chr4 115089647 115089742 -40540378 - Lx6 LINE L1 -177 7283 7188 8 1463 6326 156 43 6 chr4 115089739 115090259 -40539861 - Lx6 LINE L1 -1473 5987 5420 8 1463 513 0 0 0 chr4 115090259 115090316 -40539804 + (TTA)n Simple_repeat Simple_repeat 1 57 0 8 1463 3803 114 13 6 chr4 115090316 115090847 -40539273 - L1_Mus4 LINE L1 -16 6620 6086 9 1463 6326 149 19 5 chr4 115090847 115091496 -40538624 - Lx6 LINE L1 -461 5419 4766 8 1463 234 189 135 0 chr4 115091483 115091557 -40538563 - L1M2 LINE L1 -3309 2834 2751 9 1463 299 284 11 0 chr4 115092569 115092657 -40537463 + PB1D10 SINE Alu 27 115 -2 9 1463 5794 86 24 28 chr4 115092801 115093617 -40536503 - L1VL2 LINE L1 -1789 1826 1014 9 1463 2885 28 9 6 chr4 115093617 115093943 -40536177 + IAPLTR2b LTR ERVK 1 327 0 9 1463 5794 58 0 34 chr4 115093943 115094138 -40535982 - L1VL2 LINE L1 -5322 1013 820 9 1463 484 124 0 175 chr4 115094130 115094267 -40535853 - L1VL2 LINE L1 -6107 228 116 9 1463 279 227 0 0 chr4 115094268 115094334 -40535786 - Lx6 LINE L1 -1083 4797 4732 8 1463 591 85 0 0 chr4 115094400 115094482 -40535638 + (GA)n Simple_repeat Simple_repeat 2 83 0 9 1463 14269 163 45 74 chr4 115094501 115097118 -40533002 - Lx6 LINE L1 -1254 4626 2066 8 1463 432 0 0 0 chr4 115097118 115097166 -40532954 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1463 14269 163 45 74 chr4 115097166 115097756 -40532364 - Lx6 LINE L1 -3815 2065 1514 8 1463 37044 36 1 7 chr4 115097735 115102918 -40527202 + L1Md_T LINE L1 440 5586 -297 9 1463 8871 40 0 0 chr4 115102919 115103914 -40526206 + L1Md_T LINE L1 5588 6582 0 9 1463 3715 163 81 15 chr4 115103915 115104878 -40525242 - Lx6 LINE L1 -4332 1548 520 8 1463 225 291 0 0 chr4 115104878 115104933 -40525187 - MTEa LTR MaLR -324 55 1 9 1463 224 140 40 0 chr4 115109216 115109266 -40520854 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 9 1463 2629 169 63 48 chr4 115109852 115110374 -40519746 + Lx4B LINE L1 6499 7028 -30 1 1463 339 195 13 0 chr4 115110382 115110459 -40519661 + Lx9 LINE L1 7567 7644 0 1 1463 4879 146 11 15 chr4 115111930 115112717 -40517403 + L1VL2 LINE L1 107 890 -5445 1 1463 380 262 26 26 chr4 115112816 115112969 -40517151 + L1Md_F LINE L1 577 729 -5790 1 1463 2785 190 52 86 chr4 115112974 115113594 -40516526 + L1Md_F LINE L1 412 1062 -5457 1 1463 206 0 69 0 chr4 115113594 115113623 -40516497 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1463 6055 102 23 14 chr4 115113623 115114633 -40515487 + L1Md_F LINE L1 1063 2028 -1789 1 1463 28 29 0 0 chr4 115114665 115114700 -40515420 + AT_rich Low_complexity Low_complexity 1 35 0 1 1463 1244 68 0 0 chr4 115114770 115114916 -40515204 - B1_Mm SINE Alu -1 146 1 1 1463 36 77 0 0 chr4 115115699 115115777 -40514343 + AT_rich Low_complexity Low_complexity 1 78 0 1 1463 231 227 80 0 chr4 115115880 115115955 -40514165 + L1M2 LINE L1 2745 2825 -3318 1 1463 27100 118 64 39 chr4 115115961 115120861 -40509259 + Lx LINE L1 214 5258 -625 1 1463 1044 126 28 0 chr4 115120861 115121004 -40509116 + B1_Mus1 SINE Alu 2 148 0 1 1463 27100 115 49 24 chr4 115121004 115122377 -40507743 + Lx LINE L1 5259 6648 -6 1 1463 350 330 81 6 chr4 115122421 115122683 -40507437 + L1M3 LINE L1 5485 5763 -416 1 1463 22 0 0 0 chr4 115122701 115122723 -40507397 + AT_rich Low_complexity Low_complexity 1 22 0 1 1463 270 346 49 49 chr4 115123249 115123392 -40506728 + RLTR25B LTR ERVK 863 1005 -23 1 1463 284 143 14 0 chr4 115124029 115124099 -40506021 + CT-rich Low_complexity Low_complexity 2 72 0 1 1463 292 200 18 0 chr4 115124503 115124558 -40505562 + B3A SINE B2 1 56 -142 1 1463 2013 79 53 36 chr4 115125719 115126172 -40503948 + L1_Mus3 LINE L1 6332 6638 0 1 1463 203 230 11 0 chr4 115126479 115126566 -40503554 + CT-rich Low_complexity Low_complexity 2 89 0 1 1463 1797 65 0 5 chr4 115127745 115127962 -40502158 - L1_Mus1 LINE L1 0 6567 6352 1 1463 219 36 0 0 chr4 115128067 115128095 -40502025 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1463 297 0 0 0 chr4 115128095 115128127 -40501993 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1463 5307 111 19 1 chr4 115128140 115128871 -40501249 - Lx2 LINE L1 -1 6996 6253 1 1463 185 237 17 0 chr4 115129344 115129403 -40500717 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 1 1463 3439 37 2 0 chr4 115132232 115132639 -40497481 - L1Md_F3 LINE L1 -474 6110 5703 1 1463 4063 49 6 6 chr4 115132639 115133115 -40497005 + L1Md_F3 LINE L1 6108 6583 -1 1 1463 21 0 0 0 chr4 115133115 115133136 -40496984 + AT_rich Low_complexity Low_complexity 1 21 0 1 1463 1095 102 0 20 chr4 115133139 115133289 -40496831 + B1_Mus1 SINE Alu 2 148 0 1 1463 265 315 117 14 chr4 115133534 115133679 -40496441 + MIRc SINE MIR 52 211 -57 1 1463 20862 143 10 122 chr4 115134386 115141833 -40488287 - L1_Mus2 LINE L1 -2 6564 385 1 1463 1386 88 16 0 chr4 115142656 115142838 -40487282 - B2_Mm1t SINE B2 -7 186 2 1 1463 29 28 0 0 chr4 115142860 115142896 -40487224 + AT_rich Low_complexity Low_complexity 1 36 0 1 1463 24 53 0 0 chr4 115144189 115144227 -40485893 + AT_rich Low_complexity Low_complexity 1 38 0 1 1463 3208 292 89 26 chr4 115144774 115145905 -40484215 - Lx8 LINE L1 -47 7426 6218 1 1463 5420 121 14 0 chr4 115145905 115146632 -40483488 + RMER19A LTR ERVK 1 737 0 1 1463 3208 308 85 36 chr4 115146632 115146911 -40483209 - Lx8 LINE L1 -1256 6217 5927 1 1463 446 237 8 25 chr4 115147161 115147282 -40482838 + RMER1C Other Other 1223 1341 -1 1 1463 3484 69 5 0 chr4 115147370 115147813 -40482307 - L1_Mus1 LINE L1 0 6567 6137 1 1463 1079 137 23 23 chr4 115147850 115148022 -40482098 - MTC LTR MaLR -52 369 198 1 1463 2608 125 10 5 chr4 115148022 115148409 -40481711 - L1_Mus3 LINE L1 -1 6637 6249 1 1463 213 154 0 0 chr4 115149182 115149221 -40480899 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1463 529 310 102 33 chr4 115149325 115149689 -40480431 - RLTR12B LTR ERVK -139 389 1 1 1463 2404 73 39 27 chr4 115149898 115150234 -40479886 - L1Md_F3 LINE L1 0 6584 6245 1 1463 779 269 54 30 chr4 115150443 115150776 -40479344 + RLTR15 LTR ERVK 1 341 -18 1 1463 2585 93 11 19 chr4 115150883 115151257 -40478863 + L1_Mus4 LINE L1 6259 6629 -7 1 1463 23 33 0 0 chr4 115151257 115151287 -40478833 + AT_rich Low_complexity Low_complexity 1 30 0 1 1463 660 130 0 0 chr4 115151415 115151530 -40478590 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 1 1463 543 269 56 6 chr4 115152441 115152602 -40477518 + RMER15-int LTR ERVL 4292 4460 -539 1 1463 1774 146 40 61 chr4 115152965 115153293 -40476827 + ORR1A4 LTR MaLR 1 321 -8 1 1463 327 206 32 0 chr4 115154281 115154344 -40475776 + ORR1A4-int LTR MaLR 1899 1963 0 1 1463 322 62 0 0 chr4 115154344 115154392 -40475728 + ORR1A4 LTR MaLR 1 48 -281 1 1463 644 296 33 42 chr4 115154426 115154641 -40475479 + RMER15 LTR ERVL 328 540 -35 1 1463 296 236 0 11 chr4 115154720 115154810 -40475310 + CT-rich Low_complexity Low_complexity 3 91 0 1 1463 7055 207 34 20 chr4 115154813 115156237 -40473883 - Lx7 LINE L1 0 7696 6253 1 1463 721 269 79 36 chr4 115156673 115156884 -40473236 - Lx7 LINE L1 -1436 6260 6050 1 1463 687 25 0 0 chr4 115156884 115156965 -40473155 + (TTC)n Simple_repeat Simple_repeat 3 83 0 1 1463 721 269 79 36 chr4 115156965 115157058 -40473062 - Lx7 LINE L1 -1647 6049 5943 1 1463 279 0 0 0 chr4 115157081 115157112 -40473008 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1463 1422 174 42 163 chr4 115157112 115157366 -40472754 - L1_Mur3 LINE L1 -1256 4624 4417 1 1463 1237 54 7 0 chr4 115157366 115157513 -40472607 - B1_Mus1 SINE Alu 0 148 1 1 1463 1422 174 42 163 chr4 115157513 115157712 -40472408 - L1_Mur3 LINE L1 -1464 4416 4226 1 1463 3391 176 49 134 chr4 115157712 115158753 -40471367 - L1_Mur3 LINE L1 -2504 3376 2425 1 1463 21 95 0 0 chr4 115161876 115161939 -40468181 + AT_rich Low_complexity Low_complexity 1 63 0 1 1463 193 351 39 8 chr4 115162936 115163065 -40467055 - MIRb SINE MIR -82 186 54 1 1463 1272 129 180 4 chr4 115163304 115163560 -40466560 - Lx LINE L1 -6 6648 6348 1 1463 386 312 8 51 chr4 115166887 115167005 -40463115 - RSINE1 SINE B4 -17 148 36 1 1463 441 0 0 0 chr4 115167238 115167287 -40462833 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1463 263 220 0 0 chr4 115168172 115168222 -40461898 - RMER15 LTR ERVL -525 50 1 1 1463 187 355 33 83 chr4 115168958 115169078 -40461042 - L2c LINE L2 -13 3374 3261 1 1463 231 204 103 37 chr4 115169717 115169824 -40460296 + Lx8 LINE L1 7358 7471 -2 1 1463 785 210 31 77 chr4 115170614 115170810 -40459310 + B3 SINE B2 24 210 -6 1 1463 385 273 161 16 chr4 115170921 115171039 -40459081 + L1_Mur3 LINE L1 2433 2568 -3312 1 1463 336 24 0 0 chr4 115171039 115171080 -40459040 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1463 216 0 0 0 chr4 115171082 115171106 -40459014 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 1 1463 385 273 161 16 chr4 115171106 115171170 -40458950 + L1_Mur3 LINE L1 2569 2642 -3238 1 1463 368 20 0 20 chr4 115171235 115171285 -40458835 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1463 819 65 9 0 chr4 115171290 115171398 -40458722 - B1_Mus1 SINE Alu 0 148 40 1 1463 1067 257 5 5 chr4 115171674 115171889 -40458231 - B3 SINE B2 0 216 2 1 1463 272 285 15 51 chr4 115171986 115172123 -40457997 + CT-rich Low_complexity Low_complexity 4 135 0 1 1463 7230 112 19 5 chr4 115172190 115173509 -40456611 - Lx LINE L1 -9 6645 5309 1 1463 16675 77 11 21 chr4 115173511 115176657 -40453463 + L1Md_A LINE L1 217 4982 -901 1 1463 16431 117 9 11 chr4 115176653 115178195 -40451925 - L1VL2 LINE L1 -1723 4163 2616 1 1463 423 0 0 0 chr4 115178195 115178242 -40451878 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1463 16431 98 16 11 chr4 115178242 115180446 -40449674 - L1VL2 LINE L1 -1299 2615 400 1 1463 189 0 0 0 chr4 115180901 115180922 -40449198 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1463 1413 92 27 0 chr4 115181095 115181279 -40448841 + B2_Mm2 SINE B2 1 189 -6 1 1463 677 301 80 40 chr4 115181279 115181829 -40448291 + L1_Mur3 LINE L1 2075 2646 -3234 1 1463 424 137 0 0 chr4 115181847 115181920 -40448200 - L1Md_F2 LINE L1 -4 6578 6506 1 1463 305 196 0 0 chr4 115181937 115181993 -40448127 + PB1D9 SINE Alu 45 100 -20 1 1463 353 188 12 0 chr4 115182009 115182089 -40448031 + GA-rich Low_complexity Low_complexity 2 82 0 1 1463 2496 230 39 44 chr4 115182887 115183482 -40446638 - Lx5 LINE L1 -2 7048 6457 1 1463 263 304 50 59 chr4 115183548 115183667 -40446453 + ID_B1 SINE B4 98 215 -9 1 1463 393 247 13 0 chr4 115183684 115183761 -40446359 + ID4_ SINE ID 3 80 -3 1 1463 943 316 134 69 chr4 115184809 115185499 -40444621 - Lx9 LINE L1 -8 7465 6737 1 1463 890 231 72 0 chr4 115185492 115185700 -40444420 + Lx9 LINE L1 7249 7471 -173 1 1463 519 17 0 0 chr4 115185703 115185763 -40444357 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1463 447 19 0 0 chr4 115185763 115185814 -40444306 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1463 1224 75 0 0 chr4 115185989 115186136 -40443984 + B1_Mm SINE Alu 1 147 0 1 1463 241 281 78 11 chr4 115186178 115186268 -40443852 + L1_Rod LINE L1 5373 5468 -379 1 1463 391 280 133 32 chr4 115186256 115186444 -40443676 + Lx8 LINE L1 7239 7445 -28 1 1463 213 287 75 24 chr4 115186974 115187076 -40443044 + L2a LINE L2 3252 3397 -29 1 1463 456 276 9 0 chr4 115188266 115188371 -40441749 + B1_Mur4 SINE Alu 2 107 -43 1 1463 293 172 16 0 chr4 115188373 115188437 -40441683 + GA-rich Low_complexity Low_complexity 6 70 0 1 1463 978 258 55 98 chr4 115188872 115189316 -40440804 + L1M2c LINE L1 2027 2482 -4686 1 1463 744 230 18 92 chr4 115189316 115189479 -40440641 + RSINE1 SINE B4 3 153 -12 1 1463 978 269 58 99 chr4 115189479 115189514 -40440606 + L1M2c LINE L1 2483 2494 -4674 1 1463 2375 127 0 0 chr4 115189514 115189838 -40440282 + ORR1A3 LTR MaLR 1 324 -2 1 1463 978 269 58 99 chr4 115189838 115190058 -40440062 + L1M2c LINE L1 2495 2712 -4456 1 1463 240 240 49 85 chr4 115190085 115190167 -40439953 + L1M2c LINE L1 3175 3253 -3908 1 1463 302 0 26 0 chr4 115193234 115193272 -40436848 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1463 1241 61 0 7 chr4 115193321 115193469 -40436651 + B1_Mus2 SINE Alu 1 147 0 1 1463 1044 92 0 0 chr4 115193488 115193619 -40436501 - B1_Mus1 SINE Alu -13 135 5 1 1463 207 255 0 0 chr4 115193860 115193911 -40436209 + (CTG)n Simple_repeat Simple_repeat 1 51 0 1 1463 221 114 0 64 chr4 115193911 115193958 -40436162 + CT-rich Low_complexity Low_complexity 3 46 0 2 1463 1384 213 61 11 chr4 115194346 115194626 -40435494 - ORR1B2 LTR MaLR -71 296 3 2 1463 5004 226 78 42 chr4 115194632 115195315 -40434805 - ORR1B2-int LTR MaLR 0 1370 659 2 1463 660 244 0 23 chr4 115195315 115195445 -40434675 - B1_Mus2 SINE Alu -19 128 2 2 1463 5004 226 78 42 chr4 115195445 115196083 -40434037 - ORR1B2-int LTR MaLR -712 658 1 2 1463 1717 170 158 0 chr4 115196083 115196400 -40433720 - ORR1B2 LTR MaLR 0 367 1 2 1463 716 296 91 52 chr4 115198941 115199124 -40430996 - B4 SINE B4 -2 290 91 2 1463 4704 116 13 3 chr4 115199124 115199805 -40430315 - L1_Mus3 LINE L1 -5 6633 5946 2 1463 716 296 91 52 chr4 115199805 115199853 -40430267 - B4 SINE B4 -202 90 50 2 1463 2988 64 0 0 chr4 115201165 115201511 -40428609 - ORR1A1 LTR MaLR 0 346 1 2 1463 396 0 0 0 chr4 115203263 115203307 -40426813 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1463 23 33 0 0 chr4 115203438 115203468 -40426652 + AT_rich Low_complexity Low_complexity 1 30 0 2 1463 1443 137 4 42 chr4 115203968 115204204 -40425916 - Lx4A LINE L1 -2 7056 6830 2 1463 1783 155 32 29 chr4 115204205 115204578 -40425542 + Lx4A LINE L1 5950 6323 -735 2 1463 522 0 0 0 chr4 115205424 115205482 -40424638 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1463 459 0 0 0 chr4 115205482 115205532 -40424588 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1463 576 282 85 20 chr4 115205682 115205928 -40424192 - MLT1D LTR MaLR -24 481 220 2 1463 272 250 10 0 chr4 115206906 115207002 -40423118 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1463 2517 249 68 117 chr4 115207365 115208320 -40421800 - RMER17B LTR ERVK -50 908 1 2 1463 1325 154 22 22 chr4 115208554 115208779 -40421341 - URR1B DNA MER1_type 0 225 1 2 182 40124 29 2 6 chr4 115209245 115215444 -40414676 - L1Md_T LINE L1 -1 6581 416 2 1464 647 102 0 48 chr4 115215456 115215559 -40414561 + L1_Mur3 LINE L1 3500 3597 -2283 2 1464 415 272 107 51 chr4 115216485 115216663 -40413457 + B3A SINE B2 8 195 -3 2 1464 680 190 83 0 chr4 115216676 115216797 -40413323 + B1_Mur1 SINE Alu 11 141 -8 2 1464 698 280 51 19 chr4 115219370 115219585 -40410535 + B4A SINE B4 6 227 -65 2 1464 941 108 0 7 chr4 115219588 115219728 -40410392 + Lx2 LINE L1 6582 6720 -277 2 1464 579 96 0 0 chr4 115219728 115219811 -40410309 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 1464 3859 102 2 0 chr4 115219957 115220497 -40409623 - L1_Mm LINE L1 -357 5526 4986 2 1464 7194 86 13 7 chr4 115220516 115221489 -40408631 + L1_Mus2 LINE L1 5588 6566 0 2 1464 385 246 13 70 chr4 115221529 115221726 -40408394 + L1M3 LINE L1 2751 2946 -3197 2 1464 3690 235 41 8 chr4 115221776 115222818 -40407302 + RMER1A Other Other 85 1030 0 2 1464 324 242 60 65 chr4 115222778 115222987 -40407133 + L1M3 LINE L1 2902 3083 -2797 2 1464 11498 156 33 82 chr4 115222982 115226064 -40404056 - L1VL4 LINE L1 -2723 3160 262 2 1464 200 278 0 0 chr4 115226321 115226375 -40403745 + MIR SINE MIR 40 93 -169 2 1464 923 324 60 65 chr4 115226656 115227221 -40402899 - Lx9 LINE L1 -209 7435 6874 2 1464 929 233 62 0 chr4 115227214 115227424 -40402696 + Lx9 LINE L1 7249 7471 -173 2 1464 303 28 0 0 chr4 115227427 115227463 -40402657 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1464 390 42 0 0 chr4 115227463 115227510 -40402610 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1464 245 167 200 0 chr4 115227521 115227611 -40402509 + Lx9 LINE L1 7531 7638 -6 2 1464 237 234 241 9 chr4 115227628 115227740 -40402380 + L1_Rod LINE L1 5280 5417 -430 2 1464 334 234 0 0 chr4 115227774 115227851 -40402269 + L1_Rod LINE L1 5373 5449 -398 2 1464 428 265 115 31 chr4 115227854 115228045 -40402075 + Lx8 LINE L1 7239 7445 -28 2 1464 232 246 92 50 chr4 115228602 115228722 -40401398 + L2a LINE L2 3302 3426 0 2 1464 423 262 10 0 chr4 115229903 115230006 -40400114 + B1_Mur3 SINE Alu 3 106 -43 2 1464 188 214 18 0 chr4 115230008 115230064 -40400056 + GA-rich Low_complexity Low_complexity 6 62 0 2 1464 1881 149 102 29 chr4 115230395 115230776 -40399344 - RLTR9E LTR ERVK 0 409 1 2 1464 513 92 0 26 chr4 115230776 115230854 -40399266 - ETnERV2-int LTR ERVK 0 7406 7331 2 1464 1541 176 231 5 chr4 115230854 115231293 -40398827 - RLTR13D6 LTR ERVK -363 539 1 2 1464 1704 125 0 4 chr4 115231306 115231555 -40398565 - ETnERV3-int LTR ERVK -31 5777 5530 2 1464 312 156 0 59 chr4 115231569 115231637 -40398483 - RLTR45-int LTR ERVK -1172 6072 6009 2 1464 1337 141 14 46 chr4 115231973 115232396 -40397724 - MMETn-int LTR ERVK -2656 2188 1946 2 1464 2200 202 35 26 chr4 115232392 115232844 -40397276 - MMETn-int LTR ERVK -4586 2820 2365 2 1464 2386 190 90 100 chr4 115232846 115233753 -40396367 - MMETn-int LTR ERVK -4013 831 2 2 1464 1975 159 63 25 chr4 115233754 115234148 -40395972 - RLTR9E LTR ERVK 0 409 1 2 1464 567 257 75 83 chr4 115234256 115234689 -40395431 + L1M2c LINE L1 2027 2478 -4690 2 1464 724 209 18 92 chr4 115234701 115234864 -40395256 + RSINE1 SINE B4 3 153 -12 2 1464 1698 132 78 0 chr4 115234899 115235194 -40394926 + ORR1A3 LTR MaLR 1 318 -8 2 1464 543 280 56 24 chr4 115235198 115235447 -40394673 + L1M2c LINE L1 2485 2741 -4427 2 1464 274 301 30 5 chr4 115235447 115235576 -40394544 + L1M2c LINE L1 3177 3314 -3847 2 1464 24 67 0 0 chr4 115235901 115235946 -40394174 + AT_rich Low_complexity Low_complexity 1 45 0 2 1464 405 0 0 0 chr4 115238040 115238085 -40392035 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1464 1245 28 7 0 chr4 115238441 115238586 -40391534 - B1_Mus2 SINE Alu 0 147 2 2 1464 230 241 0 0 chr4 115238823 115238881 -40391239 + T-rich Low_complexity Low_complexity 3 60 0 2 1464 1129 95 0 0 chr4 115238887 115239035 -40391085 - B1_Mus1 SINE Alu 0 148 1 2 1464 202 269 0 0 chr4 115239271 115239323 -40390797 + (CTG)n Simple_repeat Simple_repeat 1 52 0 2 1464 308 162 0 39 chr4 115239323 115239400 -40390720 + CT-rich Low_complexity Low_complexity 3 76 0 2 1464 1176 242 61 11 chr4 115239792 115240072 -40390048 - ORR1B2 LTR MaLR -71 296 3 2 1464 6633 184 57 15 chr4 115240078 115241526 -40388594 - ORR1B2-int LTR MaLR 0 1509 1 2 1464 1678 168 101 9 chr4 115241526 115241862 -40388258 - ORR1B2 LTR MaLR 0 367 1 2 1464 609 242 24 77 chr4 115244466 115244587 -40385533 - B4 SINE B4 -82 210 87 2 1464 4556 118 7 4 chr4 115244587 115245277 -40384843 - L1_Mus3 LINE L1 -1 6637 5946 2 1464 609 242 24 77 chr4 115245277 115245325 -40384795 - B4 SINE B4 -206 86 50 2 1464 2841 61 0 0 chr4 115246630 115246976 -40383144 - ORR1A1 LTR MaLR 0 346 1 2 1464 205 297 23 78 chr4 115248885 115249013 -40381107 - L2c LINE L2 -24 3363 3243 2 1464 1393 141 9 22 chr4 115249375 115249607 -40380513 - Lx4A LINE L1 0 7058 6830 2 1464 1746 155 54 51 chr4 115249608 115249981 -40380139 + Lx4A LINE L1 5950 6323 -735 2 1464 477 0 0 0 chr4 115250820 115250873 -40379247 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1464 315 0 0 0 chr4 115250873 115250907 -40379213 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1464 599 314 127 30 chr4 115251049 115251483 -40378637 - MLT1D LTR MaLR -24 481 6 2 1464 536 95 12 0 chr4 115252264 115252348 -40377772 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1464 2037 242 68 115 chr4 115252729 115253665 -40376455 - RMER17B LTR ERVK -66 892 1 2 1464 1123 191 22 18 chr4 115253899 115254123 -40375997 - URR1B DNA MER1_type 0 225 1 2 1464 231 61 0 0 chr4 115255152 115255185 -40374935 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1464 399 21 0 0 chr4 115255400 115255448 -40374672 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1464 290 178 0 0 chr4 115256179 115256224 -40373896 + Lx3_Mus LINE L1 6481 6525 -484 2 1464 188 186 17 0 chr4 115256227 115256286 -40373834 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 2 1464 19063 87 319 13 chr4 115256355 115260385 -40369735 + L1Md_F2 LINE L1 319 5585 -298 2 1464 7860 58 13 1 chr4 115260386 115261370 -40368750 + L1Md_F2 LINE L1 5587 6582 0 2 1464 34 42 0 0 chr4 115261407 115261455 -40368665 + AT_rich Low_complexity Low_complexity 1 48 0 2 1464 572 271 121 6 chr4 115261456 115261771 -40368349 + L1M2 LINE L1 2916 3266 -2877 2 1464 309 190 0 0 chr4 115261772 115261830 -40368290 + PB1D9 SINE Alu 43 100 -20 2 1464 846 86 0 35 chr4 115261854 115261999 -40368121 + (GGGA)n Simple_repeat Simple_repeat 2 141 0 2 1464 2742 228 8 5 chr4 115262791 115263381 -40366739 - Lx5 LINE L1 -2 7048 6457 2 1464 310 304 33 50 chr4 115263446 115263567 -40366553 + ID_B1 SINE B4 97 215 -9 2 1464 211 312 53 60 chr4 115263448 115263581 -40366539 + B1F SINE Alu 18 149 0 2 1464 429 218 0 0 chr4 115263584 115263662 -40366458 + ID4 SINE ID 3 80 -3 2 1464 12285 150 42 91 chr4 115264219 115267397 -40362723 - L1Md_F LINE L1 -2602 3281 262 2 1464 200 278 0 0 chr4 115267678 115267732 -40362388 + MIR SINE MIR 40 93 -169 2 1464 991 322 60 72 chr4 115268013 115268582 -40361538 - Lx9 LINE L1 -209 7435 6874 2 1464 724 250 93 5 chr4 115268575 115268780 -40361340 + Lx9 LINE L1 7249 7471 -173 2 1464 218 32 32 0 chr4 115268783 115268814 -40361306 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1464 324 139 196 10 chr4 115268828 115268930 -40361190 + Lx9 LINE L1 7524 7644 0 2 1464 264 280 163 11 chr4 115268922 115269098 -40361022 + L1_Rod LINE L1 5257 5488 -392 2 1464 379 281 142 29 chr4 115269093 115269298 -40360822 + Lx8 LINE L1 7239 7466 -7 2 1464 416 250 9 9 chr4 115270870 115270975 -40359145 + B1_Mur4 SINE Alu 2 106 -43 2 1464 260 172 17 0 chr4 115270977 115271035 -40359085 + GA-rich Low_complexity Low_complexity 6 64 0 2 1464 534 234 87 78 chr4 115271467 115271815 -40358305 + L1M2 LINE L1 2027 2408 -4760 2 1464 547 253 32 58 chr4 115271937 115272092 -40358028 + RSINE1 SINE B4 13 163 -2 2 1464 2064 109 73 0 chr4 115272148 115272450 -40357670 + ORR1A3 LTR MaLR 1 324 -2 2 1464 546 298 52 24 chr4 115272450 115272698 -40357422 + L1M2 LINE L1 2487 2741 -4427 2 1464 263 176 32 32 chr4 115272698 115272782 -40357338 + L1M2 LINE L1 3177 3260 -3901 2 1464 486 0 0 0 chr4 115275288 115275342 -40354778 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1464 2999 26 2 121 chr4 115275890 115276330 -40353790 - RLTR10 LTR ERVK -2 388 1 2 1464 8965 18 0 2 chr4 115276332 115277329 -40352791 - RLTR10-int LTR ERVK -3 1984 990 2 1464 392 238 54 31 chr4 115277411 115277541 -40352579 - RLTR10-int LTR ERVK -5987 1594 1462 2 1464 4218 40 5 8 chr4 115277605 115278493 -40351627 - RLTR10-int LTR ERVK -989 998 41 2 1464 2474 138 38 40 chr4 115278503 115278979 -40351141 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1464 1005 122 7 0 chr4 115279055 115279202 -40350918 - B1_Mus1 SINE Alu 0 148 1 2 1464 186 143 0 0 chr4 115279487 115279522 -40350598 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2 1464 1291 196 12 8 chr4 115279925 115280172 -40349948 - ORR1B2 LTR MaLR -70 297 50 2 1464 3757 249 80 30 chr4 115280177 115280713 -40349407 - ORR1B2-int LTR MaLR -156 1214 657 2 1464 588 244 0 23 chr4 115280713 115280843 -40349277 - B1_Mus2 SINE Alu -19 128 2 2 1464 3757 249 80 30 chr4 115280843 115281463 -40348657 - ORR1B2-int LTR MaLR -714 656 1 2 1464 1987 137 89 3 chr4 115281463 115281801 -40348319 - ORR1B2 LTR MaLR 0 367 1 2 1464 1265 50 0 0 chr4 115282580 115282741 -40347379 + L1Md_A LINE L1 6422 6582 0 2 1464 1135 26 6 32 chr4 115282762 115282918 -40347202 + L1Md_F2 LINE L1 6431 6582 0 3 1464 669 261 98 56 chr4 115284668 115284835 -40345285 - B4 SINE B4 -19 273 97 3 1464 4537 116 12 1 chr4 115284835 115285518 -40344602 - L1_Mus3 LINE L1 -3 6635 5946 3 1464 669 261 98 56 chr4 115285518 115285565 -40344555 - B4 SINE B4 -196 96 50 3 1464 513 0 0 0 chr4 115286497 115286554 -40343566 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1464 213 39 0 0 chr4 115287782 115287808 -40342312 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1464 23263 47 2 1 chr4 115288086 115291619 -40338501 - L1Md_F3 LINE L1 -14 6570 3035 3 1464 26 0 0 0 chr4 115292313 115292339 -40337781 + AT_rich Low_complexity Low_complexity 1 26 0 3 1464 22 35 0 0 chr4 115292348 115292377 -40337743 + AT_rich Low_complexity Low_complexity 1 29 0 3 1464 1239 163 4 38 chr4 115292869 115293105 -40337015 - Lx4A LINE L1 0 7058 6831 3 1464 1850 155 18 24 chr4 115293106 115293444 -40336676 + Lx4A LINE L1 5949 6284 -774 3 1464 468 0 0 0 chr4 115294323 115294375 -40335745 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1464 315 0 0 0 chr4 115294375 115294409 -40335711 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1464 685 304 107 28 chr4 115294558 115295008 -40335112 - MLT1D LTR MaLR -8 619 6 3 1464 2007 253 76 99 chr4 115295491 115296404 -40333716 - RMER17B LTR ERVK -66 892 1 3 1464 1076 186 18 31 chr4 115296638 115296866 -40333254 - URR1B DNA MER1_type 0 225 1 3 1464 471 18 0 0 chr4 115298136 115298192 -40331928 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1464 321 116 0 0 chr4 115298938 115298981 -40331139 + Lx3_Mus LINE L1 6483 6525 -484 3 1464 650 181 7 0 chr4 115298981 115299125 -40330995 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 1464 270 237 0 0 chr4 115299964 115300023 -40330097 + L4 LINE RTE 1794 1852 -177 3 1464 35371 73 4 3 chr4 115301545 115307708 -40322412 - L1Md_F2 LINE L1 -47 6535 366 3 1464 737 172 7 0 chr4 115307815 115307966 -40322154 + GA-rich Low_complexity Low_complexity 1 152 0 3 1464 8554 170 69 36 chr4 115309034 115311496 -40318624 + L1_Mur3 LINE L1 535 3084 -2796 3 1464 1017 83 8 0 chr4 115311496 115311628 -40318492 + B1_Mus2 SINE Alu 3 135 -12 3 1464 358 19 36 18 chr4 115311629 115311684 -40318436 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 3 1464 8554 237 61 106 chr4 115311684 115311816 -40318304 + L1_Mur3 LINE L1 3085 3212 -702 3 1464 989 164 94 0 chr4 115311816 115312017 -40318103 - URR1A DNA MER1_type 0 226 7 3 1464 8554 237 61 106 chr4 115312017 115312291 -40317829 + L1_Mur3 LINE L1 3213 3479 -435 3 1464 330 45 0 0 chr4 115312291 115312335 -40317785 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 3 1464 4492 256 60 122 chr4 115312335 115312455 -40317665 + L1_Mur3 LINE L1 3480 3607 -307 3 1464 231 103 0 0 chr4 115312823 115312862 -40317258 + (CTGGGG)n Simple_repeat Simple_repeat 3 41 0 3 1464 265 318 22 50 chr4 115313406 115313585 -40316535 + B3A SINE B2 24 197 -1 3 1464 724 192 77 0 chr4 115313589 115313719 -40316401 + B1_Mur1 SINE Alu 2 141 -8 3 1464 438 264 95 12 chr4 115316297 115316466 -40313654 + B4A SINE B4 6 188 -104 3 1464 338 270 80 18 chr4 115316458 115316571 -40313549 + B4A SINE B4 108 227 -65 3 1464 1999 133 95 36 chr4 115316574 115316964 -40313156 + Lx2 LINE L1 6582 6994 -3 3 1464 494 299 52 0 chr4 115316978 115317132 -40312988 + B3A SINE B2 18 179 -19 3 1464 947 234 30 0 chr4 115317191 115317392 -40312728 + B3 SINE B2 1 207 -9 3 1464 450 0 0 0 chr4 115317467 115317517 -40312603 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1464 185 362 24 0 chr4 115317657 115317784 -40312336 - L3 LINE CR1 -159 4330 4201 3 1464 205 333 17 75 chr4 115317959 115318079 -40312041 + MIRc SINE MIR 86 198 -70 3 1464 1191 35 0 14 chr4 115319545 115319689 -40310431 + B1_Mus2 SINE Alu 2 143 -4 3 1464 492 62 0 0 chr4 115319698 115319762 -40310358 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 3 1464 992 11 21 59 chr4 115322650 115322837 -40307283 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 3 1464 1056 6 34 34 chr4 115322842 115323021 -40307099 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1464 778 256 30 10 chr4 115323027 115323224 -40306896 - B4A SINE B4 -27 265 65 3 1464 22 0 0 0 chr4 115323426 115323448 -40306672 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 1561 237 90 35 chr4 115323680 115324170 -40305950 + RMER1C Other Other 818 1334 -8 3 1464 1690 21 0 0 chr4 115324338 115324527 -40305593 + B2_Mm1a SINE B2 1 189 -4 3 1464 911 218 43 10 chr4 115324548 115324756 -40305364 + B3 SINE B2 2 216 0 3 1464 381 22 0 0 chr4 115324811 115324857 -40305263 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1464 1882 46 8 8 chr4 115325010 115325251 -40304869 - L1Md_F3 LINE L1 0 6584 6344 3 1464 431 78 16 0 chr4 115326166 115326230 -40303890 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1464 293 0 0 26 chr4 115326232 115326270 -40303850 + (GGGGA)n Simple_repeat Simple_repeat 4 40 0 3 1464 1102 26 19 13 chr4 115326272 115326428 -40303692 + (GGAGAA)n Simple_repeat Simple_repeat 1 157 0 3 1464 243 0 0 0 chr4 115326428 115326454 -40303666 + (GAGAA)n Simple_repeat Simple_repeat 1 27 0 3 1464 5098 181 14 20 chr4 115326461 115327363 -40302757 + Lx6 LINE L1 6374 7270 -190 3 1464 1205 52 0 0 chr4 115327363 115327516 -40302604 - RLTR1D LTR ERV1 0 605 453 3 1464 2329 60 0 0 chr4 115327516 115327800 -40302320 - L1_Mm LINE L1 -62 5821 5538 3 1464 723 275 48 43 chr4 115328053 115328348 -40301772 - RLTR6-int LTR ERV1 -3215 4563 4100 3 1464 900 0 0 0 chr4 115328377 115328477 -40301643 + (TTC)n Simple_repeat Simple_repeat 3 102 0 3 1464 1678 111 38 9 chr4 115328587 115328869 -40301251 - MMVL30-int LTR ERV1 -1467 2231 1759 3 1464 3243 56 17 10 chr4 115328870 115329285 -40300835 - MMVL30-int LTR ERV1 -1780 1918 1501 3 1464 2918 86 15 12 chr4 115329549 115329951 -40300169 - MMVL30-int LTR ERV1 -2187 1511 1109 3 1464 344 133 85 75 chr4 115330167 115330273 -40299847 - MMVL30-int LTR ERV1 -2537 762 656 3 1464 1354 71 6 0 chr4 115330278 115330460 -40299660 - RLTR1D LTR ERV1 -266 339 157 3 1464 1408 71 0 11 chr4 115331550 115331735 -40298385 + B2_Mm2 SINE B2 1 183 -12 3 1464 1081 177 60 153 chr4 115332974 115333327 -40296793 - RMER16 LTR ERVK 0 533 214 3 1464 305 200 13 51 chr4 115333294 115333373 -40296747 - RMER16 LTR ERVK -457 76 1 3 1464 3547 132 75 12 chr4 115333373 115334386 -40295734 - RMER16-int LTR ERVK 0 5406 4330 3 1464 2470 119 84 82 chr4 115334549 115334864 -40295256 - RMER16-int LTR ERVK -1429 3977 3669 3 1464 1291 61 0 0 chr4 115334864 115335011 -40295109 - B1_Mus2 SINE Alu 0 147 1 3 1464 2470 103 264 38 chr4 115335011 115335349 -40294771 - RMER16-int LTR ERVK -1738 3668 3247 3 1464 528 133 100 0 chr4 115335355 115335445 -40294675 - RLTR19-int LTR ERVK -4905 1232 1134 3 1464 36217 49 0 4 chr4 115335465 115340436 -40289684 + L1Md_A LINE L1 643 5586 -297 3 1464 9254 21 0 0 chr4 115340436 115341431 -40288689 + L1Md_A LINE L1 5587 6581 -1 3 1464 15351 19 0 0 chr4 115341431 115343263 -40286857 + L1Md_A LINE L1 4145 5976 -606 3 22 13832 25 1 0 chr4 115343262 115344852 -40285268 + L1Md_T LINE L1 3996 5586 -297 3 1465 9308 18 0 0 chr4 115344852 115345848 -40284272 + L1Md_T LINE L1 5587 6582 0 3 1465 11805 32 1 0 chr4 115345863 115347235 -40282885 + L1Md_F2 LINE L1 4214 5586 -297 3 1465 8595 54 0 1 chr4 115347235 115348232 -40281888 + L1Md_T LINE L1 5587 6582 0 3 1465 11805 32 1 0 chr4 115348232 115348246 -40281874 + L1Md_F2 LINE L1 5587 5601 -282 3 1465 23715 39 3 3 chr4 115348233 115351094 -40279026 + L1Md_F2 LINE L1 2726 5586 -297 3 1465 8609 45 2 1 chr4 115351094 115352089 -40278031 + L1Md_A LINE L1 5587 6582 0 3 1465 23715 39 3 3 chr4 115352089 115352104 -40278016 + L1Md_F2 LINE L1 5587 5602 -281 3 1465 22511 55 3 5 chr4 115352091 115354955 -40275165 + L1Md_F2 LINE L1 2726 5586 -297 3 1465 8337 50 5 16 chr4 115354956 115355962 -40274158 + L1Md_F2 LINE L1 5588 6582 0 3 1465 9654 56 12 2 chr4 115355997 115357202 -40272918 + L1Md_F3 LINE L1 4370 5586 -297 3 1465 8748 40 1 2 chr4 115357203 115358195 -40271925 + L1Md_F3 LINE L1 5588 6578 -6 3 1465 2945 166 64 50 chr4 115358199 115358776 -40271344 - RMER16-int LTR ERVK -4129 1277 693 3 1465 823 217 125 0 chr4 115359201 115359385 -40270735 + Lx8 LINE L1 7041 7247 -226 3 1465 204 245 0 0 chr4 115359411 115359460 -40270660 + T-rich Low_complexity Low_complexity 1 49 0 3 1465 8274 42 3 2 chr4 115359462 115360497 -40269623 - L1Md_F2 LINE L1 -2 6580 5546 3 1465 5962 65 30 92 chr4 115360505 115361443 -40268677 - RLTR22_Mus LTR ERVK -2 1806 927 3 1465 1292 81 0 0 chr4 115361441 115361614 -40268506 - RLTR22_Mus LTR ERVK -1634 174 2 3 1465 425 247 0 0 chr4 115361615 115361692 -40268428 + Lx8 LINE L1 7240 7316 -157 3 1465 442 346 91 35 chr4 115362988 115363481 -40266639 - MLT1F2 LTR MaLR -5 555 7 3 1465 2485 185 5 7 chr4 115363731 115364151 -40265969 - MTD LTR MaLR 0 419 1 3 1465 195 285 176 42 chr4 115364448 115364664 -40265456 + L2c LINE L2 2923 3167 -220 3 1465 2465 200 127 29 chr4 115364913 115365436 -40264684 - Lx9 LINE L1 -288 7356 6775 3 1465 2887 155 56 42 chr4 115365436 115365872 -40264248 - RLTR31_Mm LTR ERVK 0 561 120 3 1465 522 0 0 0 chr4 115365872 115365930 -40264190 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1465 2887 155 56 42 chr4 115365930 115366046 -40264074 - RLTR31_Mm LTR ERVK -442 119 2 3 1465 2465 200 127 29 chr4 115366046 115366105 -40264015 - Lx9 LINE L1 -870 6774 6717 3 1465 1189 150 100 16 chr4 115366105 115366356 -40263764 + Lx9 LINE L1 7373 7644 0 3 1465 34083 65 6 5 chr4 115366361 115371741 -40258379 + L1Md_F2 LINE L1 204 5586 -297 3 1465 8799 37 2 1 chr4 115371742 115372723 -40257397 + L1Md_F2 LINE L1 5588 6569 -13 3 1465 449 244 172 25 chr4 115373251 115373373 -40256747 + B1_Mur2 SINE Alu 2 141 -8 3 1465 423 87 0 0 chr4 115373630 115373699 -40256421 + (CATA)n Simple_repeat Simple_repeat 2 70 0 3 1465 757 278 16 16 chr4 115374963 115375153 -40254967 + B3A SINE B2 1 190 -8 3 1465 225 310 40 27 chr4 115375738 115375861 -40254259 - MIRb SINE MIR -57 211 82 3 1465 553 16 0 0 chr4 115375946 115376007 -40254113 - L1Md_F3 LINE L1 -572 6012 5952 3 1465 4549 29 21 2 chr4 115376007 115376522 -40253598 + L1Md_F3 LINE L1 6048 6572 -12 3 1465 244 288 59 42 chr4 115376654 115376775 -40253345 - MIRm SINE MIR -141 135 12 3 1465 300 327 77 0 chr4 115377576 115377680 -40252440 + LTR85c LTR Gypsy? 3 114 -709 3 1465 531 0 0 0 chr4 115378025 115378084 -40252036 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1465 287 315 64 49 chr4 115378211 115378409 -40251711 - MLT1F1 LTR MaLR -295 300 65 3 1465 1027 223 9 64 chr4 115378434 115378654 -40251466 - B3 SINE B2 -6 210 3 3 1465 6626 48 0 3 chr4 115378691 115379447 -40250673 + L1_Mus1 LINE L1 5814 6567 0 3 1465 333 0 0 0 chr4 115380176 115380213 -40249907 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1465 435 155 0 0 chr4 115380213 115380316 -40249804 + GA-rich Low_complexity Low_complexity 2 104 0 3 1465 25 0 0 0 chr4 115380466 115380491 -40249629 + AT_rich Low_complexity Low_complexity 1 25 0 3 1465 1158 122 0 0 chr4 115380571 115380719 -40249401 + B1_Mur4 SINE Alu 1 148 -2 3 1465 1951 241 81 26 chr4 115380915 115381600 -40248520 + Lx7 LINE L1 6895 7696 0 3 1465 319 313 90 0 chr4 115381672 115381806 -40248314 + Lx8 LINE L1 6689 6834 -639 3 1465 372 311 208 21 chr4 115381818 115382097 -40248023 + Lx8 LINE L1 6909 7239 -234 3 1465 229 318 0 0 chr4 115382117 115382180 -40247940 + RMER15 LTR ERVL 403 465 -110 3 1465 242 313 192 25 chr4 115382315 115382518 -40247602 + MIRb SINE MIR 23 259 -3 3 1465 218 164 18 0 chr4 115382672 115382727 -40247393 + GA-rich Low_complexity Low_complexity 3 58 0 4 1465 237 311 105 40 chr4 115382816 115382940 -40247180 + MIRc SINE MIR 69 200 -68 4 1465 648 291 53 49 chr4 115383082 115383227 -40246893 - L1M2 LINE L1 -1059 5084 4934 4 1465 1261 243 44 46 chr4 115383227 115383594 -40246526 + ORR1D2 LTR MaLR 5 370 0 4 1465 648 291 53 49 chr4 115383594 115383694 -40246426 - L1M2 LINE L1 -1210 4933 4838 4 1465 553 289 60 103 chr4 115383691 115384042 -40246078 + Lx8 LINE L1 7136 7471 -2 4 1465 1250 85 11 28 chr4 115384072 115384088 -40246032 + B2_Mm1t SINE B2 1 16 -177 4 1465 2122 105 85 3 chr4 115384088 115384394 -40245726 - IAPEY3_LTR LTR ERVK -1 331 1 4 1465 1250 85 11 28 chr4 115384394 115384559 -40245561 + B2_Mm1t SINE B2 17 179 -14 4 1465 817 249 58 27 chr4 115384565 115384825 -40245295 - L1M2 LINE L1 -1289 4854 4587 4 1465 4826 14 0 0 chr4 115384851 115385362 -40244758 + L1Md_A LINE L1 6072 6582 0 4 1465 1548 255 96 64 chr4 115385393 115386233 -40243887 + L1MA4A LINE L1 5263 6142 -158 4 1465 416 361 132 0 chr4 115386406 115386619 -40243501 - Tigger5 DNA MER2_type -2164 242 2 4 1465 451 239 170 152 chr4 115386710 115386940 -40243180 + L1MC4 LINE L1 7358 7569 -473 4 1465 1299 183 9 23 chr4 115386940 115387158 -40242962 + B3 SINE B2 2 216 0 4 1465 451 239 170 152 chr4 115387158 115387505 -40242615 + L1MC4 LINE L1 7570 7945 -97 4 1465 543 16 0 0 chr4 115387505 115387569 -40242551 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1465 872 271 15 19 chr4 115387937 115388197 -40241923 + L1_Rod LINE L1 5503 5761 -86 4 1465 22221 92 14 14 chr4 115388204 115390071 -40240049 + L1Md_A LINE L1 481 2333 -3550 4 1465 1712 22 0 21 chr4 115390071 115390261 -40239859 + B2_Mm1a SINE B2 1 186 -7 4 1465 22221 56 12 5 chr4 115390261 115392014 -40238106 + L1Md_A LINE L1 2334 4112 -1771 4 1465 33724 66 2 4 chr4 115392013 115397082 -40233038 + L1Md_F2 LINE L1 432 5589 -297 4 1465 8621 45 3 5 chr4 115397082 115398078 -40232042 + L1Md_F2 LINE L1 5590 6583 -2 4 1465 349 244 61 8 chr4 115398081 115398209 -40231911 + Lx6 LINE L1 5780 5914 -1782 4 1465 306 125 0 0 chr4 115398249 115398297 -40231823 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1465 204 40 0 0 chr4 115398325 115398350 -40231770 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1465 1321 108 34 0 chr4 115398389 115398593 -40231527 - Lx2 LINE L1 -12 6985 6775 4 1465 1681 94 86 0 chr4 115398591 115398836 -40231284 - Lx2 LINE L1 -352 6645 6380 4 1465 4752 270 59 20 chr4 115398850 115400255 -40229865 + Lx8 LINE L1 6009 7468 -5 4 1465 244 273 41 150 chr4 115400034 115400280 -40229840 + RMER1C Other Other 1122 1340 -2 4 1465 232 111 49 12 chr4 115400622 115400704 -40229416 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 4 1465 43 71 0 0 chr4 115400706 115400791 -40229329 + AT_rich Low_complexity Low_complexity 1 85 0 4 1465 425 186 46 17 chr4 115401754 115401929 -40228191 + CT-rich Low_complexity Low_complexity 1 180 0 4 1465 182 329 188 50 chr4 115401938 115402156 -40227964 + L2a LINE L2 2151 2398 -1021 4 1465 203 32 0 61 chr4 115402199 115402232 -40227888 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1465 500 273 171 15 chr4 115402234 115402665 -40227455 - L1MEc LINE L1 -1993 4326 3813 4 1465 234 232 125 0 chr4 115402674 115402730 -40227390 + ID4_ SINE ID 2 64 -19 4 1465 267 291 4 45 chr4 115402927 115403053 -40227067 - L1MEc LINE L1 -2669 3650 3532 4 1465 249 297 43 6 chr4 115403065 115403247 -40226873 - L1MEc LINE L1 -5039 1376 1096 4 1465 254 331 112 24 chr4 115403284 115403454 -40226666 + L2a LINE L2 3181 3365 -61 4 1465 435 38 0 0 chr4 115403644 115403697 -40226423 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1465 3053 137 71 2 chr4 115403701 115404192 -40225928 - RMER4B LTR ERVK -5 580 56 4 1465 491 73 95 0 chr4 115404593 115404730 -40225390 + (CA)n Simple_repeat Simple_repeat 1 150 0 4 1465 252 0 0 0 chr4 115405118 115405146 -40224974 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1465 233 297 16 0 chr4 115405853 115405917 -40224203 + MIR SINE MIR 63 127 -81 4 1465 24 32 0 0 chr4 115406173 115406204 -40223916 + AT_rich Low_complexity Low_complexity 1 31 0 4 1465 385 325 162 30 chr4 115406288 115406552 -40223568 + MER45C DNA Tip100 1 291 -662 4 1465 337 280 0 0 chr4 115406826 115406901 -40223219 - MIRc SINE MIR -123 145 71 4 1465 229 365 41 92 chr4 115406919 115407115 -40223005 + MLT1E3 LTR MaLR 425 610 -14 4 1465 324 188 112 45 chr4 115407939 115408028 -40222092 + MER3 DNA MER1_type 1 95 -114 4 1465 220 315 157 7 chr4 115408211 115408358 -40221762 - MIRb SINE MIR -94 174 6 4 1465 369 336 200 36 chr4 115408560 115408997 -40221123 + L2a LINE L2 2308 2816 -603 4 1465 998 144 191 16 chr4 115408997 115409180 -40220940 - B3 SINE B2 -1 215 1 4 1465 369 336 200 36 chr4 115409180 115409303 -40220817 + L2a LINE L2 2817 2959 -460 4 1465 500 186 33 165 chr4 115409525 115409643 -40220477 - MER53 DNA hAT -9 184 71 4 1465 759 211 15 0 chr4 115409643 115409776 -40220344 + B1_Mur2 SINE Alu 1 135 -14 4 1465 500 186 33 165 chr4 115409776 115409869 -40220251 - MER53 DNA hAT -123 70 1 4 1465 229 301 72 0 chr4 115409887 115409970 -40220150 + L2a LINE L2 3335 3423 -3 4 1465 300 158 0 0 chr4 115409972 115410029 -40220091 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 4 1465 286 229 57 0 chr4 115412586 115412656 -40217464 - B1F SINE Alu -71 78 5 4 1465 342 197 0 15 chr4 115413645 115413712 -40216408 - HAL1-3A_ME LINE L1 -817 2041 1976 4 1465 189 0 0 0 chr4 115413712 115413733 -40216387 + (CG)n Simple_repeat Simple_repeat 1 21 0 4 1465 707 200 58 22 chr4 115413801 115413939 -40216181 + RSINE1 SINE B4 4 146 -19 4 1465 273 98 0 0 chr4 115413939 115413980 -40216140 + (CATA)n Simple_repeat Simple_repeat 4 44 0 4 1465 1269 48 7 0 chr4 115414005 115414151 -40215969 + B1_Mus1 SINE Alu 2 148 0 4 1465 222 275 143 84 chr4 115414153 115414272 -40215848 - MIRm SINE MIR -143 133 5 4 1465 496 348 25 0 chr4 115415807 115415965 -40214155 + RSINE1 SINE B4 4 165 0 4 1465 617 250 16 0 chr4 115416497 115416625 -40213495 - B3 SINE B2 -86 130 1 4 1465 385 250 90 15 chr4 115416646 115416780 -40213340 - B3 SINE B2 -8 208 65 4 1465 246 267 228 0 chr4 115418134 115418235 -40211885 - L2a LINE L2 -1 3425 3302 4 1465 369 62 0 0 chr4 115418284 115418332 -40211788 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1465 288 0 0 0 chr4 115418332 115418364 -40211756 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1465 219 103 0 0 chr4 115419353 115419392 -40210728 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1465 227 236 0 18 chr4 115419543 115419599 -40210521 + MLT1A0 LTR MaLR 307 361 -4 4 1465 253 132 89 54 chr4 115419677 115419733 -40210387 - B1F SINE Alu 0 149 92 4 1465 282 56 0 0 chr4 115419763 115419799 -40210321 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 4 1465 1126 60 20 7 chr4 115420082 115420234 -40209886 + L1Md_F2 LINE L1 6429 6582 0 4 1465 600 270 7 0 chr4 115420982 115421119 -40209001 - MLT1A1 LTR MaLR 0 408 271 4 1465 256 309 97 35 chr4 115421112 115421226 -40208894 - MLT1A1 LTR MaLR -287 121 1 4 1465 726 268 278 52 chr4 115421480 115421981 -40208139 - MER82 DNA MER2_type -39 614 1 4 1465 1050 134 0 0 chr4 115422381 115422523 -40207597 + B1_Mur4 SINE Alu 2 143 -7 4 1465 620 222 63 0 chr4 115422681 115422807 -40207313 + B1_Mur3 SINE Alu 1 134 -15 4 1465 411 264 95 20 chr4 115423868 115424015 -40206105 - L1MC LINE L1 -2126 5756 5599 4 1465 498 282 27 0 chr4 115424403 115424552 -40205568 - MLT1F1 LTR MaLR 0 569 417 4 1465 896 273 72 0 chr4 115427220 115427429 -40202691 + ID_B1 SINE B4 1 224 0 4 1465 344 22 0 22 chr4 115427457 115427503 -40202617 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 4 1465 593 258 204 7 chr4 115427587 115427739 -40202381 + B3A SINE B2 1 182 -16 4 1465 222 62 0 0 chr4 115428049 115428081 -40202039 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 4 1465 26 0 0 0 chr4 115428269 115428295 -40201825 + AT_rich Low_complexity Low_complexity 1 26 0 4 1465 951 284 111 57 chr4 115428308 115428938 -40201182 + L1ME1 LINE L1 5418 6081 -98 4 1465 546 289 45 55 chr4 115429563 115429764 -40200356 + MLT1H2 LTR MaLR 267 465 -24 4 1465 1040 79 64 14 chr4 115430763 115430904 -40199216 + B1_Mus1 SINE Alu 1 148 0 4 1465 267 31 0 0 chr4 115430904 115430936 -40199184 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1465 1595 37 21 26 chr4 115430946 115431140 -40198980 + B2_Mm2 SINE B2 1 193 -2 4 1465 641 24 24 0 chr4 115432979 115433061 -40197059 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 4 1465 1141 60 0 7 chr4 115433076 115433211 -40196909 + B1_Mm SINE Alu 2 135 -12 4 1465 246 32 0 0 chr4 115433212 115433243 -40196877 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1465 827 224 104 30 chr4 115434521 115434723 -40195397 + B4A SINE B4 2 218 -74 4 1465 237 337 143 28 chr4 115435045 115435269 -40194851 - L2b LINE L2 -12 3414 3115 4 1465 1204 232 207 9 chr4 115435275 115435623 -40194497 - MTD LTR MaLR 0 419 3 4 1465 3152 78 17 22 chr4 115438031 115438439 -40191681 - MTB_Mm LTR MaLR -1 406 1 4 1465 880 262 11 16 chr4 115439230 115439412 -40190708 + B4 SINE B4 50 230 -62 4 1465 469 293 92 20 chr4 115439413 115439566 -40190554 + RSINE1 SINE B4 2 165 0 4 1465 414 221 3 44 chr4 115439600 115439699 -40190421 + B4 SINE B4 222 290 -2 4 1465 222 288 66 49 chr4 115439736 115439831 -40190289 - MIRb SINE MIR -172 104 6 4 1465 1035 82 89 0 chr4 115439906 115440041 -40190079 + B1_Mus1 SINE Alu 2 148 0 4 1465 22 0 0 0 chr4 115440041 115440063 -40190057 + AT_rich Low_complexity Low_complexity 1 22 0 4 1465 267 303 119 20 chr4 115440075 115440176 -40189944 + PB1D10 SINE Alu 1 111 -6 4 1465 611 268 51 60 chr4 115441167 115441363 -40188757 - B3A SINE B2 -2 191 1 4 1465 198 0 0 0 chr4 115441409 115441431 -40188689 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 1465 292 233 112 37 chr4 115441449 115441556 -40188564 - PB1D10 SINE Alu 0 117 3 4 1465 1422 249 93 42 chr4 115441713 115441874 -40188246 - L1MB7 LINE L1 -16 6168 5992 4 1465 530 250 140 21 chr4 115441874 115442017 -40188103 + RSINE1 SINE B4 2 161 -4 4 1465 531 0 0 0 chr4 115442025 115442084 -40188036 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1465 1422 241 138 14 chr4 115442084 115442499 -40187621 - L1MB7 LINE L1 -201 5983 5537 4 1465 6144 177 112 42 chr4 115442605 115443010 -40187110 - Lx9 LINE L1 -8 7636 7203 4 1465 369 0 0 0 chr4 115443010 115443051 -40187069 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 5 1465 1152 60 0 0 chr4 115443051 115443185 -40186935 - B1_Mus2 SINE Alu -13 134 1 5 1465 6144 177 112 42 chr4 115443185 115443554 -40186566 - Lx9 LINE L1 -442 7202 6789 4 1465 377 62 815 0 chr4 115443554 115443635 -40186485 + B1_Mus1 SINE Alu 2 148 0 5 1465 6144 177 112 42 chr4 115443635 115444230 -40185890 - Lx9 LINE L1 -856 6788 6169 4 1465 2309 137 159 30 chr4 115444358 115444862 -40185258 + RMER4B LTR ERVK 17 585 0 5 1465 1211 41 7 0 chr4 115444897 115445043 -40185077 - B1_Mm SINE Alu 0 147 1 5 1465 1389 225 245 15 chr4 115445044 115445587 -40184533 - RCHARR1 DNA MER1_type -306 668 1 5 1465 343 341 15 0 chr4 115445657 115445789 -40184331 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 1465 314 330 60 60 chr4 115445842 115446026 -40184094 - B4A SINE B4 -96 196 13 5 1465 516 189 211 8 chr4 115446039 115446167 -40183953 - B3A SINE B2 -43 155 2 5 1465 581 254 13 52 chr4 115446189 115446343 -40183777 - B1_Mur1 SINE Alu 0 149 2 5 1465 32 0 0 0 chr4 115446791 115446823 -40183297 + AT_rich Low_complexity Low_complexity 1 32 0 5 1465 315 0 0 0 chr4 115448414 115448449 -40181671 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1465 303 93 0 0 chr4 115448557 115448600 -40181520 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1465 602 234 0 0 chr4 115449229 115449340 -40180780 + PB1D10 SINE Alu 1 111 -6 5 1465 1529 237 39 18 chr4 115450135 115450518 -40179602 + Lx8 LINE L1 6346 6736 -737 5 1465 647 272 237 28 chr4 115450521 115450842 -40179278 + Lx8 LINE L1 6878 7265 -208 5 1465 369 0 0 0 chr4 115450877 115450918 -40179202 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1465 1186 54 0 0 chr4 115450925 115451072 -40179048 + B1_Mus2 SINE Alu 1 147 0 5 1465 1105 95 0 13 chr4 115451258 115451407 -40178713 + B1_Mus2 SINE Alu 1 147 0 5 1465 181 0 69 0 chr4 115451407 115451436 -40178684 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 5 1465 743 202 135 0 chr4 115451440 115451603 -40178517 + B3 SINE B2 32 216 0 5 1465 484 269 52 2 chr4 115451619 115451776 -40178344 + ID_B1 SINE B4 78 245 -47 5 1465 21 0 0 0 chr4 115452455 115452476 -40177644 + AT_rich Low_complexity Low_complexity 1 21 0 5 1465 867 232 75 87 chr4 115454543 115454901 -40175219 - ORR1E LTR MaLR -5 354 1 5 1465 543 316 51 26 chr4 115454933 115455206 -40174914 + L2a LINE L2 2148 2427 -992 5 1465 301 267 232 6 chr4 115455261 115455442 -40174678 + L2a LINE L2 2748 2969 -450 5 1465 193 349 48 0 chr4 115455485 115455568 -40174552 + L2a LINE L2 3043 3129 -297 5 1465 222 24 70 23 chr4 115455764 115455807 -40174313 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 5 1465 846 252 84 28 chr4 115455822 115456108 -40174012 - ORR1D2 LTR MaLR -66 304 3 5 1465 1202 55 0 0 chr4 115456157 115456303 -40173817 + B1_Mus2 SINE Alu 2 147 0 5 1465 359 79 191 0 chr4 115456328 115456391 -40173729 + BC1_Mm scRNA scRNA 2 76 -76 5 1465 328 322 0 76 chr4 115456430 115456588 -40173532 + RSINE1 SINE B4 8 153 -12 5 1465 188 291 48 60 chr4 115456650 115456734 -40173386 - L2b LINE L2 -276 3099 3017 5 1465 228 170 128 0 chr4 115457154 115457201 -40172919 + MIR SINE MIR 120 172 -90 5 1465 182 243 0 0 chr4 115458027 115458064 -40172056 - MIRc SINE MIR -144 124 88 5 1465 210 316 10 31 chr4 115458113 115458211 -40171909 - MIRc SINE MIR -85 183 88 5 1465 247 227 61 111 chr4 115458346 115458464 -40171656 - MIR SINE MIR -57 151 32 5 1465 3340 55 0 0 chr4 115458787 115459187 -40170933 + MTB LTR MaLR 1 400 0 5 1465 223 330 72 0 chr4 115459818 115459915 -40170205 + L2c LINE L2 3258 3361 -26 5 1465 709 214 57 0 chr4 115461268 115461408 -40168712 - B1_Mur1 SINE Alu 0 149 2 5 1465 405 0 0 0 chr4 115461412 115461457 -40168663 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 1465 468 330 55 18 chr4 115461547 115461766 -40168354 + MIR SINE MIR 19 245 -17 5 1465 341 297 59 50 chr4 115461842 115461994 -40168126 - MER112 DNA MER1_type 0 261 106 5 1465 473 262 57 0 chr4 115461994 115462116 -40168004 - B1F SINE Alu -18 131 3 5 1465 341 297 59 50 chr4 115462116 115462183 -40167937 - MER112 DNA MER1_type -156 105 40 5 1465 258 327 0 67 chr4 115462585 115462690 -40167430 - MTEa LTR MaLR -281 98 1 5 1465 212 79 0 50 chr4 115463100 115463140 -40166980 + (TTTC)n Simple_repeat Simple_repeat 4 41 0 5 1465 1090 91 0 0 chr4 115464305 115464448 -40165672 + B1_Mur3 SINE Alu 1 143 -6 5 1465 552 281 99 9 chr4 115464468 115464680 -40165440 + MIRb SINE MIR 23 253 -15 5 1465 1640 31 0 5 chr4 115465084 115465277 -40164843 + B2_Mm1a SINE B2 2 193 0 5 1465 1240 176 75 29 chr4 115465326 115465672 -40164448 + RCHARR1 DNA MER1_type 613 974 0 5 1465 297 200 117 0 chr4 115465718 115465778 -40164342 - ID4_ SINE ID -7 76 10 5 1465 1469 223 58 88 chr4 115465902 115466192 -40163928 - MTD LTR MaLR 0 419 120 5 1465 892 232 28 28 chr4 115466192 115466405 -40163715 + B3 SINE B2 4 216 0 5 1465 1469 223 58 88 chr4 115466405 115466546 -40163574 - MTD LTR MaLR -300 119 1 5 1465 354 305 109 13 chr4 115467114 115467270 -40162850 - MIRb SINE MIR -71 197 27 5 1465 1119 198 14 19 chr4 115467441 115467657 -40162463 - B3 SINE B2 -1 215 1 5 1465 635 243 31 97 chr4 115467672 115467868 -40162252 - B3A SINE B2 -15 183 1 5 1465 522 194 10 58 chr4 115468523 115468627 -40161493 + B1_Mur2 SINE Alu 1 99 -50 5 1465 1411 85 21 0 chr4 115469027 115469216 -40160904 + B2_Mm2 SINE B2 2 194 -1 5 1465 357 145 0 0 chr4 115469671 115469733 -40160387 + B1_Mur1 SINE Alu 78 139 -10 5 1465 630 0 0 0 chr4 115469734 115469804 -40160316 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 5 1465 236 224 79 30 chr4 115469999 115470100 -40160020 + L1M5 LINE L1 4466 4571 -1575 5 1465 635 267 59 45 chr4 115470206 115470426 -40159694 + ID_B1 SINE B4 2 224 0 5 1465 1311 203 77 43 chr4 115471691 115472041 -40158079 - ORR1D2 LTR MaLR -8 362 1 5 1465 562 261 35 14 chr4 115473315 115473459 -40156661 - RSINE1 SINE B4 -18 147 1 5 1465 734 190 21 7 chr4 115473467 115473610 -40156510 - B1_Mur1 SINE Alu -2 147 3 5 1465 352 297 152 9 chr4 115473660 115473884 -40156236 + MER46C DNA MER2_type 80 335 -3 5 1466 1188 293 211 22 chr4 115474432 115475364 -40154756 - L2 LINE L2 -886 2533 1426 5 1466 470 207 222 8 chr4 115475364 115475481 -40154639 + B1_Mur3 SINE Alu 2 143 -6 5 1466 981 82 59 0 chr4 115475490 115475625 -40154495 + B1_Mus1 SINE Alu 1 143 -5 5 1466 812 119 16 43 chr4 115475654 115475839 -40154281 + GA-rich Low_complexity Low_complexity 1 180 0 5 1466 606 260 246 8 chr4 115475854 115476118 -40154002 + MER58B DNA MER1_type 6 332 -9 5 1466 651 267 0 20 chr4 115476667 115476820 -40153300 + RSINE1 SINE B4 16 165 0 5 1466 384 179 0 0 chr4 115476881 115476959 -40153161 + (TATG)n Simple_repeat Simple_repeat 1 78 0 5 1466 716 251 28 17 chr4 115476961 115477139 -40152981 - B3A SINE B2 -18 180 1 5 1466 214 119 48 0 chr4 115477284 115477326 -40152794 + T-rich Low_complexity Low_complexity 2 45 0 5 1466 38677 37 0 0 chr4 115477342 115482672 -40147448 - L1Md_T LINE L1 -12 6570 1242 5 1466 518 289 150 28 chr4 115482688 115483077 -40147043 - MLT1F1 LTR MaLR -8 561 40 5 1466 262 77 0 0 chr4 115484058 115484097 -40146023 + U2 snRNA snRNA 1 39 -149 5 1466 212 120 20 0 chr4 115484917 115484967 -40145153 + (CCCCCA)n Simple_repeat Simple_repeat 3 53 0 5 1466 1641 162 133 72 chr4 115485093 115485277 -40144843 + ORR1C2 LTR MaLR 1 167 -217 5 1466 360 0 0 0 chr4 115485277 115485317 -40144803 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1466 1641 162 133 72 chr4 115485317 115485492 -40144628 + ORR1C2 LTR MaLR 168 381 -3 5 1466 503 88 60 48 chr4 115486030 115486114 -40144006 - B1_Mus1 SINE Alu -34 86 2 5 1466 239 260 168 12 chr4 115486163 115486325 -40143795 + MIR SINE MIR 49 241 -27 5 1466 204 336 64 48 chr4 115486494 115486619 -40143501 + MER5A DNA MER1_type 41 167 -22 5 1466 291 289 117 7 chr4 115486734 115486886 -40143234 + L2c LINE L2 3195 3387 0 5 1466 587 264 91 80 chr4 115486957 115487319 -40142801 + ORR1D2 LTR MaLR 5 370 0 5 1466 919 171 133 0 chr4 115487401 115487582 -40142538 - B3 SINE B2 -11 205 1 5 1466 453 258 51 165 chr4 115487601 115487838 -40142282 - ID_B1 SINE B4 -13 211 2 5 1466 227 377 13 0 chr4 115488137 115488214 -40141906 - L2b LINE L2 -29 3346 3269 5 1466 182 328 33 0 chr4 115488359 115488420 -40141700 - L2b LINE L2 -339 3080 3018 5 1466 21 0 0 0 chr4 115489405 115489426 -40140694 + AT_rich Low_complexity Low_complexity 1 21 0 5 1466 2188 208 147 20 chr4 115489868 115490461 -40139659 - RMER1B Other Other 0 1066 399 5 1466 261 229 57 0 chr4 115491316 115491386 -40138734 - MIR SINE MIR -71 191 118 5 1466 318 200 21 10 chr4 115492113 115492209 -40137911 + T-rich Low_complexity Low_complexity 3 99 0 5 1466 898 151 20 14 chr4 115492210 115492358 -40137762 - B1_Mur2 SINE Alu 0 149 1 5 1466 612 309 35 31 chr4 115492489 115492746 -40137374 + MT2A LTR ERVL 157 414 -119 5 1466 1024 218 15 5 chr4 115492772 115492975 -40137145 + Lx8 LINE L1 6346 6550 -923 5 1466 1168 281 72 8 chr4 115492966 115493329 -40136791 + Lx8 LINE L1 7088 7473 0 5 1466 326 295 48 0 chr4 115496547 115496652 -40133468 - MIRb SINE MIR -69 199 90 5 1466 236 278 20 20 chr4 115497076 115497175 -40132945 - MIR SINE MIR -70 138 40 5 1466 372 269 78 28 chr4 115497745 115497963 -40132157 + L1M5 LINE L1 2717 2945 -3201 5 1466 252 339 37 0 chr4 115498005 115498114 -40132006 + LTR33 LTR ERVL 32 144 -371 5 1466 1081 115 64 27 chr4 115498688 115498876 -40131244 + B2_Mm2 SINE B2 1 195 0 5 1466 1174 102 73 6 chr4 115498940 115499118 -40131002 - B2_Mm2 SINE B2 -5 190 1 5 1466 667 275 136 76 chr4 115499308 115499662 -40130458 - MTEa LTR MaLR 0 379 5 5 1466 372 56 27 27 chr4 115500056 115500129 -40129991 + (TTTTG)n Simple_repeat Simple_repeat 1 73 0 1 1466 537 182 113 53 chr4 115500129 115500262 -40129858 - B1_Mur1 SINE Alu 0 149 9 2 1466 213 319 61 17 chr4 115501702 115501817 -40128303 + MIR3 SINE MIR 56 175 -33 3 1466 420 20 0 0 chr4 115501820 115501869 -40128251 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1466 591 163 219 0 chr4 115502051 115502174 -40127946 - RSINE1 SINE B4 -12 153 4 5 1466 224 97 0 0 chr4 115504933 115504964 -40125156 - MIR SINE MIR -61 147 117 6 1466 423 0 0 0 chr4 115507145 115507192 -40122928 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1466 188 111 28 0 chr4 115507249 115507285 -40122835 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 8 1466 1160 68 7 7 chr4 115507594 115507742 -40122378 + B1_Mus1 SINE Alu 1 148 0 9 1466 207 0 0 0 chr4 115507747 115507770 -40122350 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1466 406 228 4 118 chr4 115509426 115509537 -40120583 + RSINE1 SINE B4 10 114 -178 1 1466 890 189 0 0 chr4 115509574 115509717 -40120403 - B1_Mur2 SINE Alu -5 144 2 1 1466 634 106 24 16 chr4 115511103 115511228 -40118892 + (GA)n Simple_repeat Simple_repeat 1 126 0 1 1466 673 159 28 0 chr4 115511273 115511380 -40118740 + PB1D9 SINE Alu 9 118 -2 1 1466 370 303 9 9 chr4 115511448 115511558 -40118562 + PB1D10 SINE Alu 1 110 -7 1 1466 266 138 17 0 chr4 115512942 115513000 -40117120 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 1466 1222 54 0 13 chr4 115513003 115513152 -40116968 + B1_Mus2 SINE Alu 1 147 0 1 1466 220 224 146 45 chr4 115513580 115513669 -40116451 + L2b LINE L2 3274 3371 -4 1 1466 270 0 0 0 chr4 115514096 115514126 -40115994 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1466 427 269 68 23 chr4 115514288 115514421 -40115699 - B1_Mur1 SINE Alu -9 140 2 2 1466 860 311 16 0 chr4 115514422 115514615 -40115505 - B3A SINE B2 -1 197 2 2 1466 1403 49 55 0 chr4 115514821 115515004 -40115116 - B2_Mm2 SINE B2 -1 194 2 2 1466 195 125 0 0 chr4 115515523 115515563 -40114557 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1466 598 325 38 17 chr4 115515872 115516110 -40114010 - MIRb SINE MIR -6 262 20 2 1466 642 283 74 14 chr4 115516684 115516899 -40113221 + MIR SINE MIR 21 248 -14 2 1466 219 209 29 43 chr4 115516982 115517052 -40113068 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 2 1466 222 373 32 90 chr4 115517509 115517786 -40112334 - L3b LINE CR1 -218 264 4 2 1466 210 284 114 44 chr4 115518578 115518692 -40111428 - MIRb SINE MIR -107 161 40 2 1466 216 0 0 0 chr4 115518756 115518780 -40111340 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1466 779 293 33 88 chr4 115518799 115519076 -40111044 + MER58B DNA MER1_type 30 306 -35 3 1466 1406 75 0 31 chr4 115519076 115519270 -40110850 - B2_Mm2 SINE B2 -7 188 1 3 1466 779 293 33 88 chr4 115519270 115519321 -40110799 + MER58B DNA MER1_type 307 340 -1 3 1466 221 336 174 66 chr4 115519546 115519804 -40110316 - L2c LINE L2 -4 3383 3098 3 1466 728 200 0 0 chr4 115519809 115519929 -40110191 - B3 SINE B2 -92 124 5 3 1466 525 262 8 16 chr4 115521056 115521184 -40108936 - RSINE1 SINE B4 -36 129 3 3 1466 691 301 72 25 chr4 115522269 115522545 -40107575 + Charlie1a DNA MER1_type 185 473 -982 3 1466 1730 156 40 18 chr4 115523458 115523784 -40106336 - MTC LTR MaLR -9 410 19 3 1466 180 0 0 0 chr4 115523788 115523808 -40106312 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 3 1466 452 275 68 91 chr4 115523935 115524155 -40105965 + MIR SINE MIR 16 230 -32 3 1466 276 221 88 0 chr4 115524345 115524413 -40105707 - ID4 SINE ID -9 74 1 3 1466 326 297 77 51 chr4 115524977 115525080 -40105040 - B4A SINE B4 0 292 187 4 1466 2209 133 86 37 chr4 115525080 115525487 -40104633 - RMER16 LTR ERVK 0 533 107 4 1466 583 229 62 28 chr4 115525553 115525586 -40104534 - B1_Mur3 SINE Alu 0 149 110 4 1466 1182 48 7 20 chr4 115525586 115525735 -40104385 - B1_Mus1 SINE Alu 0 148 2 4 1466 603 220 1 0 chr4 115525735 115525845 -40104275 - B1_Mur2 SINE Alu -40 109 1 4 1466 286 250 88 0 chr4 115525934 115526002 -40104118 - BC1_Mm scRNA scRNA -64 88 15 4 1466 405 0 0 0 chr4 115526025 115526070 -40104050 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1466 22 0 0 0 chr4 115526313 115526335 -40103785 + AT_rich Low_complexity Low_complexity 1 22 0 4 1466 249 357 41 37 chr4 115526413 115526631 -40103489 - MIRc SINE MIR -34 234 16 4 1466 924 163 0 33 chr4 115530726 115530878 -40099242 - B1_Mur3 SINE Alu -2 147 1 4 1466 812 221 20 45 chr4 115530907 115531106 -40099014 - B3A SINE B2 -2 196 3 4 1466 680 101 53 6 chr4 115531121 115531291 -40098829 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1466 1241 61 0 0 chr4 115531382 115531530 -40098590 + B1_Mus1 SINE Alu 1 148 0 5 1466 243 357 70 14 chr4 115531861 115532003 -40098117 + L2c LINE L2 3238 3387 0 5 1466 270 0 0 0 chr4 115532156 115532186 -40097934 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1466 249 33 0 0 chr4 115532186 115532215 -40097905 + (CG)n Simple_repeat Simple_repeat 2 31 0 5 1466 383 289 31 55 chr4 115532250 115532378 -40097742 + L2c LINE L2 3257 3381 -6 5 1466 748 272 60 39 chr4 115532799 115533032 -40097088 + MIR SINE MIR 1 238 -24 5 1466 442 326 27 13 chr4 115533098 115533247 -40096873 + MIRc SINE MIR 90 240 -28 5 1466 219 293 107 39 chr4 115533288 115533391 -40096729 + MIR3 SINE MIR 8 117 -91 5 1466 272 213 0 0 chr4 115533416 115533463 -40096657 + MER5A DNA MER1_type 3 49 -140 5 1466 635 230 59 0 chr4 115534126 115534261 -40095859 + B1_Mur1 SINE Alu 1 143 -6 6 1466 240 143 0 0 chr4 115534262 115534304 -40095816 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 6 1466 399 322 43 37 chr4 115537819 115538006 -40092114 + MIR SINE MIR 71 258 -4 6 1466 23 0 0 0 chr4 115538066 115538089 -40092031 + AT_rich Low_complexity Low_complexity 1 23 0 6 1466 460 358 82 5 chr4 115538371 115538590 -40091530 + MIR SINE MIR 24 259 -3 6 1466 2313 127 99 20 chr4 115539544 115539946 -40090174 + RMER4A LTR ERVK 6 439 -27 6 1466 651 133 0 0 chr4 115539947 115540052 -40090068 + (GGA)n Simple_repeat Simple_repeat 2 106 0 6 1466 694 258 31 6 chr4 115540072 115540232 -40089888 - B3A SINE B2 -34 164 1 6 1466 346 94 15 15 chr4 115540760 115540825 -40089295 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1466 24 0 0 0 chr4 115541373 115541397 -40088723 + AT_rich Low_complexity Low_complexity 1 24 0 6 1466 596 234 0 0 chr4 115543128 115543239 -40086881 + PB1D7 SINE Alu 1 111 -9 7 1466 804 164 43 0 chr4 115543888 115544028 -40086092 + B1_Mus2 SINE Alu 2 147 0 7 1466 390 299 129 58 chr4 115544112 115544336 -40085784 - MIR SINE MIR -1 261 22 7 1466 1201 274 118 0 chr4 115544466 115545066 -40085054 + L1MB5 LINE L1 5173 5856 -318 7 1466 233 254 143 0 chr4 115545076 115545139 -40084981 + ID4_ SINE ID 2 73 -10 7 1466 231 282 100 0 chr4 115545158 115545268 -40084852 + L1MB5 LINE L1 5860 5980 -204 7 1466 343 221 50 38 chr4 115545398 115545478 -40084642 + B1_Mur4 SINE Alu 4 84 -66 7 1466 715 142 0 9 chr4 115545479 115545593 -40084527 - B1_Mus1 SINE Alu -35 113 1 7 1466 213 294 94 31 chr4 115549828 115549924 -40080196 - MIRm SINE MIR -81 187 86 7 1466 22 0 0 0 chr4 115551830 115551852 -40078268 + AT_rich Low_complexity Low_complexity 1 22 0 7 1466 270 345 136 0 chr4 115552714 115552891 -40077229 - MIR SINE MIR -8 254 54 7 1466 240 337 23 0 chr4 115552902 115552988 -40077132 + MIR SINE MIR 19 106 -156 8 1466 919 280 38 61 chr4 115554561 115554854 -40075266 - B4 SINE B4 -2 290 5 8 1466 930 222 101 61 chr4 115555340 115555637 -40074483 + RMER20B LTR ERVK 91 399 -228 8 1466 369 0 0 0 chr4 115557841 115557882 -40072238 + (TCTG)n Simple_repeat Simple_repeat 3 43 0 8 1466 291 114 0 0 chr4 115558297 115558341 -40071779 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1466 240 35 0 0 chr4 115558642 115558671 -40071449 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1466 691 151 11 180 chr4 115558963 115559141 -40070979 + B1_Mur1 SINE Alu 2 149 0 8 1466 191 326 45 23 chr4 115559861 115559949 -40070171 - MIR SINE MIR -36 226 137 8 1466 303 121 0 0 chr4 115559952 115560010 -40070110 + (T)n Simple_repeat Simple_repeat 1 58 0 8 1466 215 352 52 18 chr4 115560013 115560139 -40069981 - MIRc SINE MIR -137 139 2 8 1466 271 241 52 0 chr4 115561068 115561126 -40068994 - ID4_ SINE ID -19 64 4 9 1466 251 270 0 0 chr4 115561177 115561240 -40068880 + L2b LINE L2 3309 3371 -4 9 1466 187 299 89 45 chr4 115561612 115561724 -40068396 - MIRb SINE MIR -117 151 35 9 1466 453 300 56 35 chr4 115565039 115565236 -40064884 + MIR SINE MIR 13 213 -49 9 1466 290 212 154 10 chr4 115565236 115565339 -40064781 - MLT1A1 LTR MaLR 0 408 260 9 1466 375 23 0 0 chr4 115565388 115565432 -40064688 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1466 233 229 83 0 chr4 115565432 115565480 -40064640 - B1F2 SINE Alu -97 52 1 9 1466 1344 88 11 16 chr4 115565493 115565678 -40064442 - B2_Mm2 SINE B2 -10 185 2 9 1466 205 336 19 9 chr4 115565911 115566019 -40064101 - L2 LINE L2 -2499 920 812 9 1466 468 0 0 0 chr4 115566866 115566918 -40063202 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1466 217 93 44 44 chr4 115567431 115567476 -40062644 + T-rich Low_complexity Low_complexity 2 46 0 1 1466 925 161 6 51 chr4 115567479 115567636 -40062484 - B1_Mur4 SINE Alu 0 150 1 1 1466 288 0 0 0 chr4 115567658 115567690 -40062430 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1466 283 304 8 74 chr4 115568341 115568462 -40061658 + PB1D10 SINE Alu 5 117 0 1 1466 275 294 0 0 chr4 115568467 115568535 -40061585 + ID4_ SINE ID 5 72 -11 1 1466 630 164 18 35 chr4 115568967 115569081 -40061039 - PB1D9 SINE Alu -8 112 1 1 1466 503 305 41 112 chr4 115569249 115569563 -40060557 - B4A SINE B4 0 292 1 1 1466 575 62 0 12 chr4 115570044 115570125 -40059995 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 1 1466 651 196 71 14 chr4 115570129 115570269 -40059851 - B2_Mm2 SINE B2 -45 150 3 1 1466 22 35 0 0 chr4 115570860 115570889 -40059231 + GC_rich Low_complexity Low_complexity 1 29 0 1 1466 228 229 0 0 chr4 115572709 115572757 -40057363 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1466 552 297 92 67 chr4 115573899 115574181 -40055939 + B4A SINE B4 2 290 -2 1 1466 288 0 0 0 chr4 115574218 115574250 -40055870 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1466 270 0 0 0 chr4 115574342 115574372 -40055748 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1466 501 343 86 23 chr4 115574372 115574778 -40055342 - L2c LINE L2 -230 3157 2721 1 1466 753 12 0 0 chr4 115574788 115574874 -40055246 + (CTGGGG)n Simple_repeat Simple_repeat 3 88 0 1 1466 240 35 0 0 chr4 115575710 115575739 -40054381 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1466 615 301 58 0 chr4 115577949 115578105 -40052015 + RSINE1 SINE B4 1 165 0 1 1466 262 296 28 0 chr4 115578809 115578880 -40051240 - PB1D10 SINE Alu -9 108 36 1 1466 186 342 57 49 chr4 115579906 115580029 -40050091 + L3 LINE CR1 4200 4323 -166 1 1466 866 197 16 248 chr4 115580038 115580530 -40049590 + RMER17C LTR ERVK 1 378 -32 1 1466 967 186 122 0 chr4 115581722 115581910 -40048210 - B3 SINE B2 -5 211 1 1 1466 386 265 14 68 chr4 115582253 115582399 -40047721 - MIRb SINE MIR -22 246 109 1 1466 856 60 201 0 chr4 115582632 115582766 -40047354 + B2_Mm2 SINE B2 1 161 -34 1 1466 287 49 24 0 chr4 115582766 115582807 -40047313 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 1466 711 131 188 7 chr4 115582807 115582826 -40047294 + B2_Mm1t SINE B2 163 182 -11 1 1466 926 139 0 0 chr4 115582828 115582972 -40047148 + B1_Mur4 SINE Alu 6 149 -1 1 1466 366 80 0 0 chr4 115582972 115583022 -40047098 + (ATG)n Simple_repeat Simple_repeat 2 51 0 1 1466 213 39 0 0 chr4 115583024 115583050 -40047070 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1 1466 341 245 128 0 chr4 115583050 115583144 -40046976 + B1F2 SINE Alu 21 126 -23 1 1466 328 262 193 108 chr4 115583151 115583420 -40046700 + B4 SINE B4 1 292 0 1 1466 1087 65 50 0 chr4 115583472 115583611 -40046509 - B1_Mus1 SINE Alu -1 147 2 1 1466 230 98 0 47 chr4 115583623 115583666 -40046454 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1466 180 0 0 0 chr4 115584253 115584273 -40045847 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 1 1466 289 304 97 10 chr4 115584811 115584914 -40045206 - MIRc SINE MIR -45 223 112 1 1466 271 314 9 38 chr4 115585098 115585204 -40044916 + MIR SINE MIR 115 217 -45 1 1466 503 13 0 50 chr4 115585483 115585563 -40044557 + (TATG)n Simple_repeat Simple_repeat 4 79 0 1 1466 843 128 62 35 chr4 115586645 115586790 -40043330 - B1_Mur2 SINE Alu 0 149 1 1 1466 195 42 0 0 chr4 115586790 115586814 -40043306 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1466 180 367 61 10 chr4 115587049 115587148 -40042972 - L3 LINE CR1 -106 4383 4280 1 1466 389 211 91 55 chr4 115587235 115587345 -40042775 - PB1D10 SINE Alu -1 116 3 1 1466 279 53 17 50 chr4 115589875 115589935 -40040185 + (CAAAAA)n Simple_repeat Simple_repeat 4 61 0 1 1466 396 0 0 0 chr4 115590079 115590123 -40039997 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1466 24 32 0 0 chr4 115590203 115590234 -40039886 + AT_rich Low_complexity Low_complexity 1 31 0 1 1466 887 171 14 0 chr4 115591463 115591609 -40038511 + B1_Mur1 SINE Alu 2 149 0 1 1466 852 180 0 0 chr4 115591637 115591769 -40038351 + B1_Mur3 SINE Alu 5 136 -13 1 1466 230 0 0 32 chr4 115591769 115591800 -40038320 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1466 1408 64 21 26 chr4 115591893 115592086 -40038034 + B2_Mm1t SINE B2 2 193 0 1 1466 254 335 20 165 chr4 115592181 115592381 -40037739 - MamRep38 DNA hAT -6 289 119 1 1466 208 288 45 0 chr4 115595682 115595748 -40034372 + MIRb SINE MIR 109 177 -91 1 1466 237 339 78 8 chr4 115595913 115596041 -40034079 + MIRb SINE MIR 96 232 -36 1 1466 327 275 22 0 chr4 115596608 115596699 -40033421 + MIRb SINE MIR 37 129 -139 1 1466 644 208 8 15 chr4 115596828 115596960 -40033160 + ID_B1 SINE B4 94 224 0 1 1466 219 69 0 0 chr4 115597723 115597752 -40032368 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1466 1524 58 16 5 chr4 115598138 115598328 -40031792 - B2_Mm2 SINE B2 -1 194 3 1 1466 297 75 0 0 chr4 115598440 115598480 -40031640 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 1 1466 606 63 0 0 chr4 115598480 115598559 -40031561 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1466 204 360 27 0 chr4 115598677 115598752 -40031368 - L2a LINE L2 -325 3101 3025 1 1466 871 181 159 0 chr4 115598790 115598972 -40031148 + B3 SINE B2 1 211 -5 1 1466 207 0 0 0 chr4 115599115 115599138 -40030982 + (TTGG)n Simple_repeat Simple_repeat 1 23 0 1 1466 282 29 0 0 chr4 115599139 115599174 -40030946 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 1 1466 948 158 14 0 chr4 115599174 115599320 -40030800 - B1_Mus1 SINE Alu 0 148 1 1 1466 222 320 26 13 chr4 115599320 115599396 -40030724 - L2a LINE L2 -529 2890 2814 1 1466 504 32 0 0 chr4 115599403 115599465 -40030655 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1466 650 271 7 0 chr4 115599533 115599673 -40030447 - B4 SINE B4 -7 285 145 1 1466 579 175 8 26 chr4 115599911 115600028 -40030092 + PB1D9 SINE Alu 6 120 0 1 1466 473 151 108 0 chr4 115600548 115600641 -40029479 + B1_Mur3 SINE Alu 46 148 -1 1 1466 346 215 0 15 chr4 115600867 115600933 -40029187 - ID4_ SINE ID -16 67 3 1 1466 735 335 103 34 chr4 115601204 115601649 -40028471 + L1ME4a LINE L1 5589 6064 -60 1 1466 681 214 16 0 chr4 115601972 115602098 -40028022 - B1_Mus1 SINE Alu -19 129 2 1 1466 314 250 15 0 chr4 115602515 115602583 -40027537 - ID4 SINE ID -11 72 4 1 1466 238 320 44 59 chr4 115602777 115602937 -40027183 - MIR SINE MIR -35 233 68 1 1466 1290 65 0 0 chr4 115603095 115603264 -40026856 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 1466 1058 208 30 5 chr4 115603377 115603580 -40026540 - B3 SINE B2 -6 210 3 1 1466 443 340 57 24 chr4 115605121 115605332 -40024788 - MIRb SINE MIR 0 268 51 1 1467 396 0 0 0 chr4 115605634 115605678 -40024442 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1467 306 172 59 59 chr4 115605804 115605872 -40024248 + B1F SINE Alu 1 68 -81 1 1467 295 285 32 65 chr4 115606034 115606188 -40023932 - MIRb SINE MIR -34 234 86 1 1467 186 338 70 28 chr4 115606909 115607052 -40023068 + L2b LINE L2 3036 3184 -191 1 1467 219 335 104 35 chr4 115607273 115607446 -40022674 - MIR SINE MIR -56 206 22 1 1467 612 0 0 0 chr4 115608327 115608395 -40021725 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1467 203 189 0 0 chr4 115610673 115610710 -40019410 + A-rich Low_complexity Low_complexity 1 37 0 1 1467 282 29 0 0 chr4 115612980 115613015 -40017105 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1467 576 42 0 0 chr4 115613197 115613268 -40016852 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1467 207 179 26 0 chr4 115614222 115614261 -40015859 + G-rich Low_complexity Low_complexity 3 42 0 1 1467 411 21 0 0 chr4 115614319 115614367 -40015753 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1467 3352 93 2 15 chr4 115614809 115615290 -40014830 - MT2C_Mm LTR ERVL 0 475 1 1 1467 396 0 0 0 chr4 115616282 115616326 -40013794 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1467 28 0 0 0 chr4 115616747 115616775 -40013345 + GC_rich Low_complexity Low_complexity 1 28 0 1 1467 444 19 0 0 chr4 115617061 115617114 -40013006 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1467 261 0 0 0 chr4 115618206 115618235 -40011885 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1467 268 324 18 44 chr4 115619305 115619418 -40010702 + ID_B1 SINE B4 66 175 -49 1 1467 385 294 9 44 chr4 115619327 115619441 -40010679 + PB1D10 SINE Alu 8 117 0 1 1467 407 241 196 28 chr4 115619455 115619634 -40010486 - MLT1F LTR MaLR -52 496 288 1 1467 378 155 0 0 chr4 115619692 115619789 -40010331 + (TTAGGG)n Simple_repeat Simple_repeat 5 101 0 1 1467 329 77 39 0 chr4 115619791 115619843 -40010277 + (CAGAGA)n Simple_repeat Simple_repeat 5 58 0 1 1467 713 52 14 9 chr4 115619902 115620013 -40010107 + B1_Mm SINE Alu 42 149 0 1 1467 195 0 56 28 chr4 115620013 115620049 -40010071 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1467 1338 90 11 0 chr4 115620089 115620278 -40009842 + B2_Mm1t SINE B2 1 191 -2 1 1467 1202 64 62 17 chr4 115620305 115620481 -40009639 + B2_Mm1a SINE B2 1 184 -9 1 1467 375 239 0 54 chr4 115620587 115620680 -40009440 + RSINE1 SINE B4 78 165 0 1 1467 264 253 48 0 chr4 115620692 115620775 -40009345 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1467 234 229 49 0 chr4 115620791 115620913 -40009207 + (CA)n Simple_repeat Simple_repeat 2 129 0 2 1467 287 330 9 27 chr4 115620963 115621075 -40009045 - L1MD3 LINE L1 -590 7405 7296 2 1467 295 324 95 49 chr4 115621073 115621255 -40008865 + Lx8 LINE L1 7147 7328 -145 2 1467 450 0 0 0 chr4 115621255 115621305 -40008815 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1467 295 324 95 49 chr4 115621305 115621427 -40008693 + Lx8 LINE L1 7329 7464 -9 2 1467 573 225 31 0 chr4 115621649 115621778 -40008342 + MIR SINE MIR 10 142 -120 2 1467 895 44 0 0 chr4 115621778 115621892 -40008228 + B2_Mm2 SINE B2 48 161 -34 2 1467 347 271 36 27 chr4 115625299 115625409 -40004711 + PB1D10 SINE Alu 6 116 -1 2 1467 782 168 0 14 chr4 115625809 115625954 -40004166 + B1_Mur3 SINE Alu 6 148 -1 2 1467 303 28 0 0 chr4 115626846 115626882 -40003238 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1467 501 244 76 0 chr4 115626882 115627001 -40003119 - ID_B1 SINE B4 -15 209 82 2 1467 316 216 105 76 chr4 115628397 115628419 -40001701 - PB1 SINE Alu 0 127 113 2 1467 886 94 7 7 chr4 115628419 115628559 -40001561 + (TTTCC)n Simple_repeat Simple_repeat 1 140 0 2 1467 422 232 0 0 chr4 115628559 115628641 -40001479 - PB1D10 SINE Alu -16 101 20 2 1467 212 269 0 0 chr4 115628986 115629038 -40001082 + MIR SINE MIR 183 234 -28 2 1467 314 266 0 71 chr4 115629073 115629158 -40000962 - L1MEg LINE L1 -4134 1950 1872 2 1467 183 205 0 0 chr4 115629201 115629240 -40000880 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1467 619 257 109 47 chr4 115629282 115629539 -40000581 - B4A SINE B4 -18 274 2 2 1467 251 249 52 62 chr4 115629540 115629682 -40000438 - PB1D7 SINE Alu 0 149 13 2 1467 526 211 35 9 chr4 115629699 115629814 -40000306 - B1_Mur1 SINE Alu 0 149 32 2 1467 737 289 6 0 chr4 115629825 115630005 -40000115 - MIR SINE MIR -35 227 47 2 1467 504 0 0 0 chr4 115631243 115631299 -39998821 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 1467 760 125 70 0 chr4 115631299 115631427 -39998693 - B1_Mur1 SINE Alu -12 137 1 2 1467 267 296 33 115 chr4 115631498 115631509 -39998611 + B4A SINE B4 78 87 -205 2 1467 387 0 0 0 chr4 115631509 115631552 -39998568 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1467 441 0 0 0 chr4 115631552 115631600 -39998520 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1467 707 218 8 0 chr4 115631609 115631742 -39998378 + B1F SINE Alu 9 142 -7 2 1467 267 296 33 115 chr4 115631742 115631770 -39998350 + B4A SINE B4 122 244 -48 2 1467 550 184 8 8 chr4 115631773 115631899 -39998221 + GA-rich Low_complexity Low_complexity 1 126 0 2 1467 198 0 0 0 chr4 115631900 115631922 -39998198 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1467 468 198 0 18 chr4 115631925 115632041 -39998079 + B1F1 SINE Alu 40 149 0 2 1467 611 193 65 22 chr4 115632962 115633048 -39997072 + B1_Mur3 SINE Alu 5 89 -60 2 1467 1154 96 116 39 chr4 115633048 115633255 -39996865 - URR1A DNA MER1_type -3 223 1 2 1467 611 193 65 22 chr4 115633255 115633306 -39996814 + B1_Mur3 SINE Alu 90 148 -1 2 1467 222 91 0 0 chr4 115633803 115633836 -39996284 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1467 1060 63 28 0 chr4 115633836 115633979 -39996141 - B1_Mm SINE Alu 0 147 1 2 1467 1005 110 63 47 chr4 115633982 115634173 -39995947 - B2_Mm2 SINE B2 -1 194 1 2 1467 904 128 28 0 chr4 115634177 115634318 -39995802 - B1_Mus2 SINE Alu 0 147 3 2 1467 21 0 0 0 chr4 115635710 115635731 -39994389 + GC_rich Low_complexity Low_complexity 1 21 0 2 1467 22 0 0 0 chr4 115635872 115635894 -39994226 + GC_rich Low_complexity Low_complexity 1 22 0 2 1467 975 166 104 15 chr4 115637376 115637578 -39992542 + URR1B DNA MER1_type 6 225 0 2 1467 258 290 0 41 chr4 115637925 115638022 -39992098 + GA-rich Low_complexity Low_complexity 1 93 0 2 1467 692 248 0 0 chr4 115638180 115638321 -39991799 + B1_Mur1 SINE Alu 1 141 -8 2 1467 936 132 0 0 chr4 115638322 115638474 -39991646 + (GAA)n Simple_repeat Simple_repeat 3 154 0 2 1467 625 281 0 0 chr4 115638498 115638639 -39991481 + RSINE1 SINE B4 2 142 -23 2 1467 543 31 0 0 chr4 115638639 115638704 -39991416 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1467 625 281 0 0 chr4 115638704 115638715 -39991405 + RSINE1 SINE B4 143 153 -12 2 1467 759 100 0 0 chr4 115638733 115638843 -39991277 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2 1467 204 125 0 0 chr4 115640473 115640505 -39989615 + (CCCCCG)n Simple_repeat Simple_repeat 4 35 0 2 1467 414 0 0 0 chr4 115641418 115641464 -39988656 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1467 468 219 107 25 chr4 115641884 115642006 -39988114 + B3A SINE B2 1 132 -66 2 1467 459 0 0 0 chr4 115642026 115642077 -39988043 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1467 180 0 0 0 chr4 115642201 115642221 -39987899 + (TTC)n Simple_repeat Simple_repeat 2 21 0 2 1467 333 172 0 0 chr4 115643536 115643600 -39986520 + A-rich Low_complexity Low_complexity 1 64 0 2 1467 492 18 0 0 chr4 115643928 115643985 -39986135 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1467 1159 36 0 0 chr4 115644528 115644667 -39985453 + B1_Mus1 SINE Alu 1 139 -9 2 1467 216 0 0 0 chr4 115644667 115644691 -39985429 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1467 36 0 0 0 chr4 115645650 115645686 -39984434 + AT_rich Low_complexity Low_complexity 1 36 0 2 1467 381 22 0 0 chr4 115645865 115645911 -39984209 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1467 381 211 124 9 chr4 115646529 115646634 -39983486 - PB1D10 SINE Alu 0 117 1 2 1467 198 351 70 9 chr4 115646635 115646750 -39983370 - L2c LINE L2 -13 3374 3253 2 1467 405 0 0 0 chr4 115647036 115647081 -39983039 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1467 407 239 11 11 chr4 115647086 115647179 -39982941 - B4A SINE B4 -199 93 1 2 1467 327 253 133 33 chr4 115647295 115647385 -39982735 + B1F SINE Alu 5 103 -46 2 1467 1359 80 11 0 chr4 115647414 115647602 -39982518 - B2_Mm1t SINE B2 -3 190 1 2 1467 192 77 0 0 chr4 115647798 115647824 -39982296 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 2 1467 301 286 0 19 chr4 115648379 115648486 -39981634 + CT-rich Low_complexity Low_complexity 2 106 0 2 1467 209 265 0 0 chr4 115648629 115648678 -39981442 + GA-rich Low_complexity Low_complexity 3 51 0 2 1467 214 302 16 0 chr4 115649022 115649085 -39981035 - MIR SINE MIR -122 86 23 2 1467 225 320 105 37 chr4 115649632 115649794 -39980326 + MIRb SINE MIR 88 260 -8 2 1467 209 211 0 19 chr4 115651169 115651222 -39978898 + C-rich Low_complexity Low_complexity 6 57 0 2 1467 258 106 0 0 chr4 115651324 115651371 -39978749 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 2 1467 23 54 0 0 chr4 115652220 115652257 -39977863 + GC_rich Low_complexity Low_complexity 1 37 0 2 1467 23 0 0 0 chr4 115653595 115653618 -39976502 + GC_rich Low_complexity Low_complexity 1 23 0 2 1467 988 8 16 0 chr4 115653770 115653891 -39976229 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 2 1467 324 235 0 14 chr4 115653891 115653960 -39976160 - B3 SINE B2 -14 202 135 2 1467 254 241 11 0 chr4 115654981 115655068 -39975052 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 1467 2294 53 3 59 chr4 115655106 115655444 -39974676 - ORR1A2 LTR MaLR -8 319 1 2 1467 255 31 0 0 chr4 115655679 115655711 -39974409 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1467 1157 36 0 0 chr4 115655715 115655854 -39974266 - B1_Mm SINE Alu -7 140 2 2 1467 265 303 62 87 chr4 115655926 115656121 -39973999 - MIRb SINE MIR -56 212 23 2 1467 396 0 0 0 chr4 115656132 115656176 -39973944 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1467 498 255 170 0 chr4 115656230 115656371 -39973749 - RSINE1 SINE B4 0 165 1 2 1467 849 160 24 0 chr4 115656475 115656644 -39973476 + Lx4A LINE L1 6884 7056 -2 2 1467 265 277 74 16 chr4 115657073 115657194 -39972926 - MIRb SINE MIR -95 173 46 2 1467 497 311 85 46 chr4 115657532 115657681 -39972439 + L1ME1 LINE L1 5883 6048 -131 2 1467 1004 275 66 3 chr4 115657681 115658016 -39972104 + ORR1E LTR MaLR 4 359 0 2 1467 497 311 85 46 chr4 115658016 115658149 -39971971 + L1ME1 LINE L1 6049 6176 -3 2 1467 200 298 48 0 chr4 115658319 115658403 -39971717 + (CCCCAA)n Simple_repeat Simple_repeat 4 91 0 2 1467 201 326 14 57 chr4 115658370 115658510 -39971610 + (CCCCAG)n Simple_repeat Simple_repeat 4 137 0 2 1467 435 290 0 0 chr4 115658603 115658710 -39971410 + PB1 SINE Alu 1 107 -20 2 1467 478 165 20 10 chr4 115658769 115658867 -39971253 + MTEb LTR MaLR 149 247 -132 2 1467 422 266 37 9 chr4 115658928 115659036 -39971084 + B1F SINE Alu 14 124 -25 2 1467 1631 267 62 17 chr4 115659505 115659970 -39970150 + MTE-int LTR MaLR 677 1162 -418 2 1467 266 366 113 16 chr4 115660637 115660831 -39969289 - MIR SINE MIR -30 232 20 2 1467 677 236 98 16 chr4 115660883 115661077 -39969043 - ORR1E-int LTR MaLR -48 1532 1323 2 1467 849 133 177 4 chr4 115661079 115661305 -39968815 + RMER10B LTR ERVL 1 265 -133 2 1467 298 313 0 0 chr4 115661305 115661372 -39968748 + C-rich Low_complexity Low_complexity 1 67 0 2 1467 555 170 24 30 chr4 115661372 115661536 -39968584 + CT-rich Low_complexity Low_complexity 5 167 0 2 1467 777 252 15 5 chr4 115661541 115661744 -39968376 + RMER10B LTR ERVL 194 398 0 2 1467 3663 288 89 59 chr4 115661744 115662566 -39967554 - ORR1E-int LTR MaLR -255 1325 427 2 1467 1346 63 32 0 chr4 115662566 115662755 -39967365 + B2_Mm2 SINE B2 1 195 0 2 1467 3663 288 89 59 chr4 115662755 115662893 -39967227 - ORR1E-int LTR MaLR -1154 426 327 2 1467 527 269 67 7 chr4 115662893 115663043 -39967077 - RSINE1 SINE B4 -2 163 5 2 1467 3663 288 89 59 chr4 115663043 115663368 -39966752 - ORR1E-int LTR MaLR -1254 326 1 2 1467 740 235 20 145 chr4 115663368 115663724 -39966396 - ORR1E LTR MaLR -4 375 34 2 1467 284 219 0 30 chr4 115663949 115664015 -39966105 - PB1D7 SINE Alu -56 64 1 2 1467 219 345 11 22 chr4 115664015 115664042 -39966078 - B4A SINE B4 -209 83 58 2 1467 2116 141 14 19 chr4 115664101 115664462 -39965658 + ORR1B2 LTR MaLR 1 359 -8 2 1467 4831 109 23 94 chr4 115664916 115665218 -39964902 + RLTR13D6 LTR ERVK 1 305 -597 3 1467 1170 68 0 0 chr4 115665218 115665366 -39964754 + B1_Mus1 SINE Alu 1 148 0 3 1467 4831 116 24 94 chr4 115665366 115666030 -39964090 + RLTR13D6 LTR ERVK 306 875 -27 3 1467 528 305 80 0 chr4 115666513 115666664 -39963456 + ID_B1 SINE B4 59 221 -3 3 1467 318 218 38 13 chr4 115666799 115666878 -39963242 + B3A SINE B2 15 95 -103 3 1467 1171 121 12 56 chr4 115666892 115667105 -39963015 + ORR1A3 LTR MaLR 1 219 -127 3 1467 927 296 59 18 chr4 115667225 115667497 -39962623 - RMER15 LTR ERVL 0 575 293 3 1467 198 191 0 0 chr4 115667724 115667766 -39962354 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1467 1387 29 117 0 chr4 115668671 115668842 -39961278 + B2_Mm1a SINE B2 1 191 -2 3 1467 280 263 217 96 chr4 115669198 115669396 -39960724 + L2c LINE L2 3182 3403 -23 3 1467 224 143 219 41 chr4 115669437 115669510 -39960610 + L2b LINE L2 2043 2128 -1291 3 1467 182 295 76 13 chr4 115669491 115669570 -39960550 + L2b LINE L2 3079 3162 -213 3 1467 258 355 11 11 chr4 115670010 115670104 -39960016 - L2b LINE L2 -3 3372 3279 3 1467 725 153 89 0 chr4 115670386 115670510 -39959610 + B1_Mur4 SINE Alu 1 135 -15 3 1467 180 270 108 0 chr4 115672646 115672720 -39957400 - L3b LINE CR1 -216 266 185 3 1467 277 233 11 0 chr4 115674224 115674314 -39955806 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 3 1467 724 103 26 8 chr4 115674315 115674432 -39955688 - B1_Mur3 SINE Alu -1 148 30 3 1467 961 187 63 15 chr4 115674807 115675013 -39955107 - B3 SINE B2 0 216 1 3 1467 211 355 31 82 chr4 115676192 115676388 -39953732 + L3b LINE CR1 286 471 -11 3 1467 397 262 134 24 chr4 115676388 115676552 -39953568 + MER110A LTR ERV1 173 354 -114 3 1467 1087 181 21 219 chr4 115678787 115678812 -39951308 - RMER17C LTR ERVK 0 410 386 3 1467 975 118 0 0 chr4 115678812 115678965 -39951155 + (GGAGA)n Simple_repeat Simple_repeat 2 154 0 3 1467 1087 181 21 219 chr4 115678965 115679450 -39950670 - RMER17C LTR ERVK -25 385 1 3 1467 206 348 14 0 chr4 115679869 115679938 -39950182 - L2b LINE L2 -13 3362 3293 3 1467 742 245 33 62 chr4 115679947 115680167 -39949953 + B3A SINE B2 2 195 0 3 1467 567 0 0 0 chr4 115680601 115680664 -39949456 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1467 229 191 33 11 chr4 115680955 115681045 -39949075 - Lx5 LINE L1 -5 7045 6954 3 1467 252 0 0 0 chr4 115681501 115681529 -39948591 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1467 252 0 0 0 chr4 115681618 115681646 -39948474 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1467 436 179 71 0 chr4 115681647 115681731 -39948389 - PB1D9 SINE Alu -13 107 18 3 1467 342 223 29 78 chr4 115681742 115681844 -39948276 - PB1D10 SINE Alu 0 117 21 3 1467 1088 71 156 0 chr4 115681847 115682001 -39948119 + B2_Mm1t SINE B2 2 179 -14 3 1467 314 111 321 62 chr4 115682070 115682182 -39947938 + B2_Mm2 SINE B2 46 186 -9 3 1467 1629 38 0 0 chr4 115682187 115682373 -39947747 + B2_Mm1a SINE B2 2 187 -6 3 1467 719 151 126 0 chr4 115682445 115682564 -39947556 - B1_Mus1 SINE Alu -13 135 2 3 1467 647 189 277 12 chr4 115682664 115682830 -39947290 + B3 SINE B2 1 210 -6 3 1467 1134 224 212 9 chr4 115683101 115683417 -39946703 + MTD LTR MaLR 26 405 -14 3 1467 194 293 60 75 chr4 115683805 115683938 -39946182 - L2b LINE L2 0 3387 3257 3 1467 198 103 0 0 chr4 115683994 115684023 -39946097 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 3 1467 519 217 236 48 chr4 115684581 115684746 -39945374 + B3A SINE B2 2 197 -1 3 1467 798 205 55 24 chr4 115684757 115684922 -39945198 + B4A SINE B4 123 292 0 3 1467 532 222 21 0 chr4 115685212 115685320 -39944800 + B1F SINE Alu 3 122 -5 3 1467 448 252 170 25 chr4 115685389 115685451 -39944669 + ID_B1 SINE B4 37 99 -125 3 1467 802 130 42 42 chr4 115685451 115685595 -39944525 + B1_Mur3 SINE Alu 5 148 -1 3 1467 448 252 170 25 chr4 115685595 115685644 -39944476 + ID_B1 SINE B4 100 158 -66 3 1467 687 57 0 0 chr4 115685644 115685732 -39944388 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1467 448 252 170 25 chr4 115685732 115685778 -39944342 + ID_B1 SINE B4 159 216 -8 3 1467 1834 127 22 153 chr4 115685930 115686275 -39943845 + ORR1B2 LTR MaLR 3 318 -49 3 1467 864 105 98 0 chr4 115686275 115686408 -39943712 + B1_Mus2 SINE Alu 2 147 0 3 1467 1834 127 22 153 chr4 115686408 115686473 -39943647 + ORR1B2 LTR MaLR 319 359 -8 3 1467 220 251 68 21 chr4 115687010 115687104 -39943016 - L2b LINE L2 -259 3116 3018 3 1467 1204 172 14 9 chr4 115687172 115687383 -39942737 + B3 SINE B2 1 212 -4 3 1467 252 302 104 0 chr4 115687939 115688035 -39942085 + PB1 SINE Alu 1 106 -21 3 1467 480 294 72 11 chr4 115688073 115688265 -39941855 + ID_B1 SINE B4 59 268 -24 3 1467 867 186 0 14 chr4 115688424 115688571 -39941549 + B1_Mur4 SINE Alu 6 150 0 3 1467 304 327 12 73 chr4 115688428 115688593 -39941527 + B4A SINE B4 94 248 -44 3 1467 302 302 141 39 chr4 115690923 115691124 -39938996 - MIRb SINE MIR -49 219 4 3 1467 549 0 0 0 chr4 115691276 115691337 -39938783 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1467 324 0 0 0 chr4 115691337 115691372 -39938748 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1467 410 200 0 51 chr4 115691373 115691452 -39938668 - B1_Mur3 SINE Alu -68 81 7 3 1467 275 294 11 56 chr4 115691452 115691463 -39938657 - B4 SINE B4 -126 166 81 3 1467 236 307 86 38 chr4 115691934 115692039 -39938081 + PB1D10 SINE Alu 1 110 -7 3 1467 279 174 398 23 chr4 115692152 115692248 -39937872 + MIRb SINE MIR 30 170 -98 3 1467 375 313 109 43 chr4 115692392 115692602 -39937518 + MIR SINE MIR 29 252 -10 3 1467 665 115 204 0 chr4 115693158 115693271 -39936849 - B1_Mus1 SINE Alu 0 148 13 3 1467 1301 27 0 0 chr4 115693271 115693418 -39936702 + B1_Mm SINE Alu 1 147 0 3 1467 226 215 46 0 chr4 115693537 115693602 -39936518 + (CAGA)n Simple_repeat Simple_repeat 4 71 0 3 1467 252 0 0 0 chr4 115693624 115693652 -39936468 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 3 1467 1091 139 221 0 chr4 115693672 115693895 -39936225 - Lx9 LINE L1 -21 7623 7360 3 1467 258 32 0 0 chr4 115693895 115693926 -39936194 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1467 1091 139 221 0 chr4 115693926 115693969 -39936151 - Lx9 LINE L1 -285 7359 7300 3 1467 345 227 91 20 chr4 115693997 115694096 -39936024 + MLT1A1 LTR MaLR 2 107 -258 3 1467 576 251 30 79 chr4 115694130 115694175 -39935945 - B3A SINE B2 -4 194 153 3 1467 1389 57 0 0 chr4 115694175 115694404 -39935716 + (TG)n Simple_repeat Simple_repeat 1 229 0 3 1467 576 251 30 79 chr4 115694404 115694559 -39935561 - B3A SINE B2 -46 152 4 3 1467 688 254 27 16 chr4 115694716 115694900 -39935220 + MLT1A1 LTR MaLR 215 400 -8 3 1467 340 219 98 73 chr4 115695080 115695203 -39934917 + B1F SINE Alu 1 126 -23 3 1467 339 228 112 0 chr4 115695170 115695250 -39934870 - PB1D10 SINE Alu -55 93 6 3 1467 364 340 27 20 chr4 115695482 115695629 -39934491 + B1F SINE Alu 1 148 -1 3 1467 554 186 118 0 chr4 115695922 115696024 -39934096 - B1F SINE Alu 0 149 36 3 1467 447 216 156 23 chr4 115696060 115696188 -39933932 + B1_Mm SINE Alu 2 146 -1 3 1467 220 250 159 0 chr4 115696256 115696360 -39933760 + MIR SINE MIR 126 257 -11 3 1467 244 115 63 32 chr4 115696773 115696836 -39933284 + GA-rich Low_complexity Low_complexity 4 68 0 3 1467 1371 224 92 6 chr4 115696841 115697169 -39932951 + ORR1D1 LTR MaLR 9 364 -10 3 1467 2236 82 25 104 chr4 115697202 115697483 -39932637 + ORR1A2 LTR MaLR 1 286 -41 3 1467 1301 27 0 0 chr4 115697483 115697630 -39932490 + B1_Mm SINE Alu 1 147 0 3 1467 2236 82 25 104 chr4 115697630 115697703 -39932417 + ORR1A2 LTR MaLR 287 327 0 3 1467 596 193 76 0 chr4 115697733 115697852 -39932268 + B3 SINE B2 2 129 -87 3 1467 29 28 0 0 chr4 115697886 115697922 -39932198 + AT_rich Low_complexity Low_complexity 1 36 0 3 1467 505 221 164 22 chr4 115697961 115698095 -39932025 - RSINE1 SINE B4 -10 155 3 3 1467 1587 42 0 30 chr4 115698106 115698305 -39931815 - B2_Mm1t SINE B2 0 193 1 3 1467 429 70 0 0 chr4 115698305 115698362 -39931758 + (T)n Simple_repeat Simple_repeat 1 57 0 3 1467 285 275 25 0 chr4 115698670 115698750 -39931370 + GA-rich Low_complexity Low_complexity 4 85 0 3 1467 1231 54 0 0 chr4 115699172 115699319 -39930801 + B1_Mus2 SINE Alu 1 147 0 3 1467 1055 59 7 0 chr4 115699733 115699869 -39930251 + B1_Mus2 SINE Alu 10 146 -1 3 1467 180 0 0 0 chr4 115699871 115699891 -39930229 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1467 283 258 78 89 chr4 115700025 115700204 -39929916 + B4A SINE B4 44 220 -72 3 1467 459 159 115 31 chr4 115700083 115700213 -39929907 + B1F2 SINE Alu 9 149 0 3 1467 368 290 66 82 chr4 115700552 115700720 -39929400 + MT2B LTR ERVL 88 257 -327 3 1467 798 194 8 0 chr4 115700624 115700758 -39929362 + B1_Mus1 SINE Alu 7 141 -7 3 1467 823 141 235 0 chr4 115700839 115701009 -39929111 - B3 SINE B2 -4 212 3 3 1467 505 297 26 10 chr4 115701407 115701422 -39928698 + L1M3 LINE L1 4827 4842 -1301 3 1467 826 199 14 0 chr4 115701422 115701563 -39928557 - B1_Mur2 SINE Alu -5 144 2 3 1467 514 267 35 17 chr4 115701563 115701741 -39928379 + L1M3 LINE L1 4843 5023 -1120 3 1467 413 236 94 0 chr4 115701774 115701875 -39928245 + ID_B1 SINE B4 80 190 -34 3 1467 619 254 23 0 chr4 115701875 115702005 -39928115 + B3 SINE B2 2 134 -82 3 1467 495 147 103 47 chr4 115702002 115702109 -39928011 - PB1D9 SINE Alu 0 120 8 3 1467 388 180 232 24 chr4 115702109 115702124 -39927996 - ID_B1 SINE B4 0 221 74 3 1467 298 84 0 0 chr4 115702167 115702219 -39927901 - L1_Mur3 LINE L1 -918 5441 5356 3 1467 1179 61 0 26 chr4 115702243 115702394 -39927726 + B1_Mm SINE Alu 1 147 0 3 1467 254 42 0 78 chr4 115702477 115702528 -39927592 - B3 SINE B2 -1 215 169 3 1467 858 159 7 14 chr4 115702534 115702674 -39927446 - B1_Mus1 SINE Alu -1 147 9 3 1467 396 245 0 113 chr4 115702577 115702692 -39927428 - MT2B LTR ERVL -344 257 156 4 1467 327 299 58 0 chr4 115702692 115702829 -39927291 + L1ME1 LINE L1 5596 5740 -439 4 1467 414 272 56 8 chr4 115703132 115703258 -39926862 - B1F2 SINE Alu -17 132 1 4 1467 818 158 7 58 chr4 115703588 115703743 -39926377 - B1_Mur4 SINE Alu -1 149 3 4 1467 235 253 60 206 chr4 115703743 115703773 -39926347 - B4A SINE B4 -222 70 68 4 1467 385 303 123 13 chr4 115703779 115703933 -39926187 - ID_B1 SINE B4 -6 218 48 4 1467 371 317 147 26 chr4 115704174 115704365 -39925755 + L1ME1 LINE L1 5946 6159 -20 4 1467 374 304 86 9 chr4 115704368 115704590 -39925530 - L1M5 LINE L1 -644 5800 5562 4 1467 639 298 79 98 chr4 115704590 115705133 -39924987 + MT2A LTR ERVL 1 533 0 4 1467 460 292 0 0 chr4 115707074 115707180 -39922940 - PB1D10 SINE Alu -7 110 5 4 1467 620 263 69 90 chr4 115707214 115707402 -39922718 + B3A SINE B2 1 184 -14 4 1467 206 392 9 0 chr4 115707517 115707624 -39922496 + C-rich Low_complexity Low_complexity 1 108 0 4 1467 211 274 0 19 chr4 115707518 115707570 -39922550 + CT-rich Low_complexity Low_complexity 2 52 0 4 1467 621 236 39 0 chr4 115707624 115707751 -39922369 - B1_Mur1 SINE Alu -17 132 1 4 1467 1047 200 29 0 chr4 115707814 115708019 -39922101 - B3 SINE B2 -5 211 1 4 1467 383 260 0 111 chr4 115708021 115708129 -39921991 - PB1 SINE Alu -2 125 30 4 1467 375 291 48 0 chr4 115708695 115708798 -39921322 + B1F1 SINE Alu 42 149 0 4 1467 630 289 16 23 chr4 115708810 115708995 -39921125 + ID_B1 SINE B4 83 262 -30 4 1467 1279 34 0 0 chr4 115709010 115709156 -39920964 + B1_Mus2 SINE Alu 2 147 0 4 1467 282 143 0 0 chr4 115709156 115709205 -39920915 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1467 231 289 93 80 chr4 115709388 115709416 -39920704 + RSINE1 SINE B4 2 128 -37 4 1467 262 215 47 164 chr4 115709416 115709544 -39920576 + B3A SINE B2 70 182 -16 4 1467 463 173 74 0 chr4 115709568 115709649 -39920471 - PB1D10 SINE Alu -30 87 1 4 1467 837 186 27 7 chr4 115709841 115709987 -39920133 + B1_Mur4 SINE Alu 2 150 0 4 1467 637 241 14 7 chr4 115710070 115710208 -39919912 + ID_B1 SINE B4 82 220 -4 4 1467 211 275 82 59 chr4 115710867 115710952 -39919168 + L3 LINE CR1 4165 4251 -238 4 1467 936 169 14 0 chr4 115711193 115711341 -39918779 - B1_Mur4 SINE Alu 0 150 1 4 1467 1093 218 24 0 chr4 115711441 115711652 -39918468 + B3 SINE B2 1 216 0 4 1467 1307 92 49 0 chr4 115711767 115711951 -39918169 + B2_Mm2 SINE B2 2 194 -1 4 1467 318 243 160 13 chr4 115713348 115713423 -39916697 - PB1D10 SINE Alu -18 131 46 4 1467 317 256 89 44 chr4 115713471 115713561 -39916559 - PB1 SINE Alu -18 109 16 4 1467 1633 184 108 32 chr4 115713588 115713958 -39916162 - MTD LTR MaLR -2 417 20 4 1467 1504 59 21 0 chr4 115714087 115714273 -39915847 - B2_Mm2 SINE B2 -4 191 2 4 1467 299 310 73 99 chr4 115714396 115714473 -39915647 + MLT1J LTR MaLR 273 355 -157 4 1467 1526 57 0 54 chr4 115714473 115714676 -39915444 + B2_Mm1t SINE B2 2 193 0 4 1467 299 310 73 99 chr4 115714676 115714831 -39915289 + MLT1J LTR MaLR 356 499 -13 4 1467 469 276 154 35 chr4 115714867 115715036 -39915084 - B3A SINE B2 -9 189 1 4 1467 534 177 0 174 chr4 115715125 115715223 -39914897 + B1_Mur4 SINE Alu 1 65 -85 4 1467 1445 84 0 5 chr4 115715223 115715415 -39914705 + B2_Mm2 SINE B2 1 191 -4 4 1467 534 154 0 52 chr4 115715415 115715482 -39914638 + B1_Mur4 SINE Alu 66 132 -18 4 1467 1088 81 112 34 chr4 115716210 115716242 -39913878 - B2_Mm2 SINE B2 0 195 166 4 1467 186 43 0 0 chr4 115716242 115716265 -39913855 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1467 1088 81 112 34 chr4 115716265 115716411 -39913709 - B2_Mm2 SINE B2 -30 165 3 4 1467 953 132 7 20 chr4 115716545 115716692 -39913428 - B1_Mur4 SINE Alu 0 150 6 4 1467 230 302 89 58 chr4 115716692 115716729 -39913391 + YREP_Mm Unknown Unknown 174 346 -1466 4 1467 875 251 40 0 chr4 115718974 115719173 -39910947 - ID_B1 SINE B4 -16 208 2 4 1467 683 334 129 30 chr4 115719201 115719479 -39910641 + L2a LINE L2 2970 3265 -161 4 1467 333 0 0 0 chr4 115719479 115719516 -39910604 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1467 683 334 129 30 chr4 115719516 115719577 -39910543 + L2a LINE L2 3266 3352 -74 4 1467 3069 79 5 5 chr4 115719577 115719973 -39910147 + MTA_Mm LTR MaLR 1 396 0 4 1467 683 334 129 30 chr4 115719973 115720027 -39910093 + L2a LINE L2 3353 3402 -24 4 1467 198 0 0 0 chr4 115720252 115720274 -39909846 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1467 277 356 0 47 chr4 115720639 115720745 -39909375 + MIR SINE MIR 22 122 -140 4 1467 2276 148 47 23 chr4 115721334 115721735 -39908385 - MTC LTR MaLR -13 408 1 4 1467 262 272 59 81 chr4 115721894 115722030 -39908090 + MT2B2 LTR ERVL 144 276 -308 4 1467 362 252 107 45 chr4 115721922 115722034 -39908086 + ID_B1 SINE B4 84 202 -22 4 1467 410 294 28 113 chr4 115722057 115722199 -39907921 + RSINE1 SINE B4 36 165 0 4 1467 1415 59 10 41 chr4 115722236 115722431 -39907689 + B2_Mm2 SINE B2 1 189 -6 4 1467 260 219 15 45 chr4 115722646 115722713 -39907407 + ID4_ SINE ID 8 72 -11 4 1467 864 144 14 14 chr4 115722796 115722937 -39907183 - B1_Mur3 SINE Alu -7 142 2 4 1467 1184 36 0 0 chr4 115723039 115723177 -39906943 + B1_Mus2 SINE Alu 2 139 -8 4 1467 234 62 0 0 chr4 115723177 115723209 -39906911 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1467 282 288 0 46 chr4 115725944 115726053 -39904067 + GA-rich Low_complexity Low_complexity 2 105 0 4 1467 319 312 32 0 chr4 115726679 115726772 -39903348 + Arthur1A DNA Tip100 1 96 -81 4 1467 532 196 46 9 chr4 115726854 115726962 -39903158 + B1_Mur1 SINE Alu 2 113 -36 4 1467 246 306 0 0 chr4 115727064 115727126 -39902994 + B4A SINE B4 143 204 -88 4 1467 643 208 32 0 chr4 115727233 115727358 -39902762 - B1_Mur1 SINE Alu -7 142 14 4 1467 226 149 43 0 chr4 115727368 115727415 -39902705 - LTR37B LTR ERV1 -38 430 382 4 1467 216 0 0 0 chr4 115727443 115727467 -39902653 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1467 1167 88 0 0 chr4 115727467 115727615 -39902505 - B1_Mus1 SINE Alu 0 148 1 4 1467 1496 54 11 0 chr4 115727745 115727931 -39902189 - B2_Mm1a SINE B2 -5 188 1 4 1467 2755 125 19 5 chr4 115727949 115728359 -39901761 - Lx4B LINE L1 -4 7054 6639 4 1467 491 219 24 8 chr4 115728367 115728491 -39901629 + B1_Mur1 SINE Alu 14 139 -10 4 1467 243 0 0 0 chr4 115728502 115728529 -39901591 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1467 1485 110 59 4 chr4 115728554 115728801 -39901319 + RMER4B LTR ERVK 1 262 -323 4 1467 2349 109 177 2 chr4 115728801 115729252 -39900868 - RLTR47_MM LTR ERV1 0 532 3 4 1467 1485 201 60 933 chr4 115729252 115729486 -39900634 + RMER4B LTR ERVK 263 466 0 4 1467 1336 98 0 5 chr4 115729560 115729744 -39900376 + B2_Mm2 SINE B2 4 186 -9 4 1467 266 239 41 82 chr4 115729749 115729822 -39900298 + ID4 SINE ID 11 80 -3 4 1467 2115 127 45 58 chr4 115729887 115730314 -39899806 - RLTR25A LTR ERVK 0 1103 683 4 1467 944 95 0 0 chr4 115730310 115730447 -39899673 - B2_Mm2 SINE B2 -31 164 28 4 1467 597 120 0 0 chr4 115730465 115730557 -39899563 + (TCC)n Simple_repeat Simple_repeat 3 94 0 4 1467 402 123 0 0 chr4 115730562 115730619 -39899501 - RLTR25A LTR ERVK -1046 57 1 4 1467 463 271 93 10 chr4 115730728 115730880 -39899240 + B3 SINE B2 5 172 -44 4 1467 282 95 0 0 chr4 115730880 115730922 -39899198 + (CATA)n Simple_repeat Simple_repeat 1 42 0 4 1467 463 271 93 10 chr4 115730922 115730963 -39899157 + B3 SINE B2 173 213 -3 4 1467 452 270 18 2 chr4 115731122 115731253 -39898867 - B1F1 SINE Alu -5 144 14 4 1467 453 250 20 0 chr4 115731281 115731381 -39898739 + RSINE1 SINE B4 47 148 -17 4 1467 21 0 0 0 chr4 115731408 115731429 -39898691 + AT_rich Low_complexity Low_complexity 1 21 0 4 1467 345 47 0 0 chr4 115731642 115731685 -39898435 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 4 1467 775 134 97 0 chr4 115731685 115731819 -39898301 - B1_Mur4 SINE Alu -3 147 1 4 1467 894 246 108 24 chr4 115731836 115732086 -39898034 + B4A SINE B4 22 292 0 4 1467 3040 139 31 69 chr4 115732088 115732358 -39897762 + RLTR31B_Mm LTR ERVK 1 273 -284 4 1467 1249 41 0 0 chr4 115732358 115732505 -39897615 + B1_Mm SINE Alu 1 147 0 4 1467 3040 139 31 69 chr4 115732505 115732812 -39897308 + RLTR31B_Mm LTR ERVK 274 556 -1 4 1467 1074 83 31 52 chr4 115732910 115733101 -39897019 - B2_Mm2 SINE B2 0 195 9 4 1467 568 251 23 30 chr4 115733143 115733341 -39896779 + B3A SINE B2 2 193 -5 4 1467 510 239 164 5 chr4 115733432 115733621 -39896499 - Charlie1a DNA MER1_type -478 977 759 4 1467 316 314 38 0 chr4 115733641 115733746 -39896374 - RMER15 LTR ERVL -3 572 464 4 1467 265 324 66 38 chr4 115733966 115734072 -39896048 - PB1D7 SINE Alu -7 113 5 4 1467 802 152 35 21 chr4 115734097 115734238 -39895882 - B1_Mm SINE Alu 0 147 5 4 1467 556 262 109 55 chr4 115734245 115734447 -39895673 + MER20 DNA MER1_type 2 214 -5 4 1467 416 246 42 141 chr4 115734458 115734499 -39895621 + B3A SINE B2 3 37 -161 4 1467 1263 127 0 5 chr4 115734499 115734689 -39895431 + B2_Mm2 SINE B2 1 189 -6 4 1467 416 246 42 141 chr4 115734689 115734860 -39895260 + B3A SINE B2 38 194 -4 4 1467 538 201 49 63 chr4 115734895 115734997 -39895123 + B1_Mm SINE Alu 6 105 -42 4 1467 1249 85 51 0 chr4 115734997 115735174 -39894946 + B2_Mm1t SINE B2 2 187 -6 4 1467 538 201 49 63 chr4 115735174 115735214 -39894906 + B1_Mm SINE Alu 106 145 -2 4 1467 363 244 0 0 chr4 115735339 115735417 -39894703 - RSINE1 SINE B4 -86 79 2 4 1467 613 217 32 38 chr4 115735419 115735577 -39894543 - ID_B1 SINE B4 -1 223 67 4 1467 487 250 70 26 chr4 115735588 115735744 -39894376 - RMER5 LTR ERV1 -198 336 174 4 183 1756 239 179 81 chr4 115736157 115736962 -39893158 + RMER19B LTR ERVK 1 884 -18 4 1468 685 127 85 23 chr4 115736999 115737128 -39892992 - B1_Mur1 SINE Alu 0 149 13 5 1468 281 279 0 32 chr4 115737216 115737313 -39892807 + T-rich Low_complexity Low_complexity 32 124 0 5 1468 862 163 13 13 chr4 115737313 115737462 -39892658 - B1_Mur3 SINE Alu 0 149 1 5 1468 281 279 0 32 chr4 115737462 115737490 -39892630 + T-rich Low_complexity Low_complexity 4 31 0 5 1468 232 288 106 0 chr4 115737509 115737575 -39892545 - PB1 SINE Alu -26 101 29 5 1468 1717 26 0 0 chr4 115737780 115737973 -39892147 - B2_Mm1t SINE B2 0 193 1 5 1468 384 215 25 0 chr4 115738095 115738174 -39891946 + B3 SINE B2 129 209 -7 5 1468 698 194 67 7 chr4 115738186 115738321 -39891799 + B1_Mur2 SINE Alu 7 149 0 5 1468 592 211 14 43 chr4 115738355 115738494 -39891626 + B1_Mur1 SINE Alu 14 148 -1 5 1468 22 0 0 0 chr4 115738494 115738516 -39891604 + AT_rich Low_complexity Low_complexity 1 22 0 5 1468 1117 93 271 39 chr4 115738593 115738681 -39891439 - ORR1A4 LTR MaLR 0 329 229 5 1468 1366 51 114 0 chr4 115738681 115738856 -39891264 - B2_Mm2 SINE B2 0 195 1 5 1468 1117 93 271 39 chr4 115738856 115739025 -39891095 - ORR1A4 LTR MaLR -101 228 12 5 1468 393 239 68 0 chr4 115739123 115739211 -39890909 - PB1D10 SINE Alu -18 99 6 5 1468 24 0 0 0 chr4 115739262 115739286 -39890834 + AT_rich Low_complexity Low_complexity 1 24 0 5 1468 268 298 0 0 chr4 115739432 115739489 -39890631 + ID4_ SINE ID 8 64 -19 5 1468 40 0 0 0 chr4 115739499 115739539 -39890581 + AT_rich Low_complexity Low_complexity 1 40 0 5 1468 1075 125 57 47 chr4 115740523 115740716 -39889404 + B2_Mm2 SINE B2 1 195 0 5 1468 1439 79 11 0 chr4 115740904 115741094 -39889026 - B2_Mm1t SINE B2 -1 192 1 5 1468 314 287 10 96 chr4 115741121 115741225 -39888895 - PB1 SINE Alu -17 103 9 5 1468 234 329 12 0 chr4 115741232 115741314 -39888806 - L1M4 LINE L1 -586 5598 5516 5 1468 588 267 44 0 chr4 115741460 115741595 -39888525 - B1F SINE Alu -8 141 1 5 1468 409 188 55 2 chr4 115741595 115741696 -39888424 - B1_Mus1 SINE Alu -41 108 2 5 1468 590 222 184 17 chr4 115741887 115742061 -39888059 + B3 SINE B2 5 207 -9 5 1468 34 42 0 0 chr4 115742061 115742109 -39888011 + AT_rich Low_complexity Low_complexity 1 48 0 5 1468 312 250 12 12 chr4 115742113 115742194 -39887926 + ID4 SINE ID 3 83 0 5 1468 191 288 131 39 chr4 115742252 115742382 -39887738 + MIRb SINE MIR 115 256 -12 5 1468 665 310 105 47 chr4 115743470 115743812 -39886308 + MER74B LTR ERVL 89 450 -172 5 1468 284 283 67 48 chr4 115743822 115743926 -39886194 - PB1D9 SINE Alu -14 106 1 5 1468 216 0 0 0 chr4 115743953 115743977 -39886143 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1468 340 243 56 46 chr4 115744096 115744204 -39885916 + PB1D10 SINE Alu 1 109 -8 5 1468 234 0 0 0 chr4 115744211 115744237 -39885883 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1468 1093 36 73 0 chr4 115744242 115744379 -39885741 + B1_Mus1 SINE Alu 2 148 0 5 1468 984 16 0 0 chr4 115745081 115745202 -39884918 + B2_Mm2 SINE B2 1 121 -74 5 1468 183 80 0 0 chr4 115745218 115745243 -39884877 + (CAGG)n Simple_repeat Simple_repeat 4 28 0 5 1468 574 241 0 87 chr4 115745281 115745345 -39884775 + B3 SINE B2 2 58 -158 5 1468 603 140 138 159 chr4 115745345 115745540 -39884580 - B2_Mm2 SINE B2 -4 191 1 5 1468 574 270 16 110 chr4 115745540 115745690 -39884430 + B3 SINE B2 55 194 -1 5 1468 951 202 24 19 chr4 115745884 115746091 -39884029 + B3 SINE B2 9 216 0 5 1468 806 196 28 0 chr4 115746352 115746495 -39883625 - B1_Mur2 SINE Alu -2 147 1 5 1468 360 304 34 64 chr4 115746674 115746878 -39883242 + MIR SINE MIR 21 218 -44 5 1468 339 235 25 0 chr4 115747021 115747102 -39883018 - ID4 SINE ID 0 83 1 5 1468 30 27 0 0 chr4 115748248 115748285 -39881835 + GC_rich Low_complexity Low_complexity 1 37 0 5 1468 296 225 102 59 chr4 115750445 115750563 -39879557 + RSINE1 SINE B4 3 125 -40 5 1468 458 225 71 9 chr4 115750946 115751058 -39879062 + PB1D7 SINE Alu 1 119 -1 5 1468 333 279 91 24 chr4 115751079 115751244 -39878876 + B3 SINE B2 41 216 0 5 1468 569 203 8 8 chr4 115751467 115751586 -39878534 - B1F1 SINE Alu 0 149 31 5 1468 513 0 0 0 chr4 115751605 115751662 -39878458 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1468 698 181 8 0 chr4 115752182 115752309 -39877811 + B1_Mur1 SINE Alu 22 149 0 5 1468 274 295 44 109 chr4 115752186 115752323 -39877797 + B4 SINE B4 111 238 -54 5 1468 517 279 115 5 chr4 115752330 115752521 -39877599 + B3 SINE B2 5 216 0 5 1468 1175 88 0 0 chr4 115752532 115752680 -39877440 - B1_Mus1 SINE Alu 0 148 1 5 1468 1216 54 18 0 chr4 115752680 115752848 -39877272 - B2_Mm2 SINE B2 -1 194 24 5 1468 282 273 163 66 chr4 115752855 115753051 -39877069 - MIR SINE MIR -35 227 13 5 1468 1177 75 0 0 chr4 115753559 115753706 -39876414 + B1_Mus2 SINE Alu 1 147 0 5 1468 1000 211 9 36 chr4 115753783 115754004 -39876116 + B3 SINE B2 2 216 0 5 1468 309 222 11 69 chr4 115754161 115754248 -39875872 + ID_B1 SINE B4 139 220 -4 5 1468 321 212 120 56 chr4 115754424 115754439 -39875681 - B4A SINE B4 -56 236 107 5 1468 377 183 0 131 chr4 115754439 115754546 -39875574 - PB1D9 SINE Alu -6 114 22 5 1468 317 43 0 21 chr4 115754551 115754599 -39875521 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1468 339 22 0 0 chr4 115754599 115754645 -39875475 - B1_Mm SINE Alu 0 147 102 5 1468 1173 75 0 0 chr4 115754722 115754869 -39875251 + B1_Mus2 SINE Alu 1 147 0 5 1468 257 216 135 0 chr4 115754920 115754994 -39875126 + U6 snRNA snRNA 10 93 -14 5 1468 401 226 18 18 chr4 115754997 115755109 -39875011 - PB1D9 SINE Alu -3 117 2 5 1468 246 338 0 0 chr4 115755245 115755325 -39874795 + ID4 SINE ID 1 80 -3 5 1468 300 83 0 0 chr4 115755418 115755466 -39874654 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 1468 1159 68 0 0 chr4 115755466 115755613 -39874507 - B1_Mus1 SINE Alu 0 148 2 5 1468 596 303 66 0 chr4 115756135 115756333 -39873787 + B3 SINE B2 3 213 -3 5 1468 250 303 81 18 chr4 115757191 115757302 -39872818 - MT2B LTR ERVL -313 288 171 5 1468 318 268 144 0 chr4 115757211 115757308 -39872812 - PB1D9 SINE Alu -9 111 1 5 1468 210 171 24 0 chr4 115757375 115757416 -39872704 + PB1D10 SINE Alu 76 117 0 5 1468 1262 34 0 0 chr4 115757509 115757655 -39872465 + B1_Mus2 SINE Alu 1 146 -1 5 1468 234 256 368 56 chr4 115757697 115757851 -39872269 + B3 SINE B2 6 207 -9 5 1468 237 205 0 0 chr4 115757863 115757902 -39872218 + tRNA-Ala-GCY_ tRNA tRNA 28 66 -9 5 1468 355 250 51 20 chr4 115758481 115758579 -39871541 + RSINE1 SINE B4 24 124 -41 5 1468 414 0 0 0 chr4 115758579 115758625 -39871495 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1468 190 188 0 77 chr4 115758724 115758776 -39871344 + MER5B DNA MER1_type 7 54 -124 5 1468 592 213 78 42 chr4 115758787 115758929 -39871191 + B1_Mus2 SINE Alu 1 147 0 5 1468 524 231 121 15 chr4 115759064 115759196 -39870924 + B1_Mus1 SINE Alu 3 148 0 5 1468 616 127 36 18 chr4 115759602 115759714 -39870406 - PB1D9 SINE Alu -1 119 6 5 1468 258 312 10 30 chr4 115759761 115759860 -39870260 + B3A SINE B2 60 156 -42 5 1468 568 266 91 17 chr4 115760217 115760393 -39869727 - B3 SINE B2 -18 198 10 5 1468 470 202 64 9 chr4 115760529 115760639 -39869481 - B1_Mus1 SINE Alu 0 148 33 5 1468 461 267 96 0 chr4 115760633 115760768 -39869352 + B4 SINE B4 97 244 -48 5 1468 273 296 155 0 chr4 115760852 115760994 -39869126 + MIR SINE MIR 94 257 -5 5 1468 409 233 167 0 chr4 115763261 115763381 -39866739 + B1_Mur4 SINE Alu 10 149 -1 5 1468 268 253 71 24 chr4 115764013 115764098 -39866022 - PB1D10 SINE Alu -20 97 9 5 1468 210 290 0 46 chr4 115764598 115764663 -39865457 - ID4_ SINE ID -19 64 3 5 1468 1174 61 0 0 chr4 115765203 115765350 -39864770 + B1_Mus1 SINE Alu 2 148 0 5 1468 251 259 0 0 chr4 115766068 115766122 -39863998 - B4A SINE B4 0 292 239 5 1468 374 293 0 0 chr4 115766240 115766322 -39863798 - ID4_ SINE ID 0 83 2 5 1468 1115 77 143 0 chr4 115766326 115766494 -39863626 - B2_Mm2 SINE B2 -1 194 3 5 1468 1186 55 0 27 chr4 115766494 115766644 -39863476 - B1_Mus1 SINE Alu 0 148 3 5 1468 682 289 16 16 chr4 115766663 115766853 -39863267 - B4A SINE B4 -72 220 31 5 1468 465 285 124 7 chr4 115767037 115767182 -39862938 + RSINE1 SINE B4 2 163 -2 5 1468 798 168 7 14 chr4 115767270 115767415 -39862705 - B1_Mur3 SINE Alu 0 149 6 5 1468 202 222 0 0 chr4 115768535 115768571 -39861549 + polypurine Low_complexity Low_complexity 1 36 0 5 1468 1128 69 0 12 chr4 115770923 115771084 -39859036 + B2_Mm2 SINE B2 4 162 -33 5 1468 189 74 0 0 chr4 115772361 115772388 -39857732 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1468 1064 43 40 54 chr4 115773334 115773482 -39856638 - B1_Mm SINE Alu -1 146 1 5 1468 622 239 102 59 chr4 115773483 115773670 -39856450 - B3 SINE B2 -21 195 1 5 1468 399 319 14 7 chr4 115774814 115774956 -39855164 + B4A SINE B4 4 146 -146 5 1468 937 148 7 0 chr4 115775118 115775267 -39854853 + B1_Mur4 SINE Alu 1 150 0 5 1468 498 197 110 8 chr4 115775284 115775402 -39854718 + B1_Mur1 SINE Alu 5 134 -15 6 1468 688 225 81 29 chr4 115775467 115775588 -39854532 + B3 SINE B2 32 148 -68 6 1468 417 20 0 0 chr4 115775588 115775638 -39854482 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1468 688 225 81 29 chr4 115775638 115775690 -39854430 + B3 SINE B2 149 212 -4 6 1468 462 254 60 17 chr4 115775791 115775907 -39854213 + RSINE1 SINE B4 6 126 -39 6 1468 302 219 92 42 chr4 115775938 115776057 -39854063 + MT2B LTR ERVL 155 279 -322 6 1468 644 137 0 25 chr4 115775963 115776083 -39854037 + B1_Mur3 SINE Alu 33 149 0 6 1468 209 136 0 64 chr4 115776305 115776317 -39853803 + A-rich Low_complexity Low_complexity 1 12 0 6 1468 1183 61 7 0 chr4 115776317 115776464 -39853656 + B1_Mus1 SINE Alu 1 148 0 6 1468 209 136 0 64 chr4 115776464 115776498 -39853622 + A-rich Low_complexity Low_complexity 13 44 0 6 1468 297 231 236 7 chr4 115776547 115776695 -39853425 + B3A SINE B2 2 183 -15 6 1468 489 169 92 46 chr4 115776703 115776814 -39853306 + B1_Mur4 SINE Alu 15 137 -13 6 1468 266 26 53 0 chr4 115776814 115776852 -39853268 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1468 489 169 92 46 chr4 115776852 115776870 -39853250 + B1_Mur4 SINE Alu 138 150 0 6 1468 1067 99 0 7 chr4 115777202 115777344 -39852776 - B1_Mus1 SINE Alu -7 141 1 6 1468 568 202 25 25 chr4 115777352 115777474 -39852646 + B1_Mus1 SINE Alu 21 142 -6 6 1468 367 235 23 92 chr4 115777547 115777678 -39852442 + B3A SINE B2 76 197 -1 6 1468 634 223 77 57 chr4 115777688 115777897 -39852223 + B3 SINE B2 2 214 -2 6 1468 22 35 0 0 chr4 115777911 115777940 -39852180 + AT_rich Low_complexity Low_complexity 1 29 0 6 1468 470 273 16 8 chr4 115778124 115778246 -39851874 - ID_B1 SINE B4 0 224 102 6 1468 294 236 16 65 chr4 115778924 115779110 -39851010 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 6 1468 1135 50 43 0 chr4 115779275 115779416 -39850704 + B1_Mus1 SINE Alu 1 147 -1 6 1468 366 23 0 0 chr4 115779533 115779576 -39850544 + (CTCA)n Simple_repeat Simple_repeat 4 46 0 6 1468 216 298 66 88 chr4 115779709 115779845 -39850275 - MIR3 SINE MIR -68 140 8 6 1468 1152 123 15 60 chr4 115779876 115780032 -39850088 - B2_Mm2 SINE B2 -5 190 38 6 1468 1114 36 0 55 chr4 115780032 115780177 -39849943 - B1_Mus2 SINE Alu -10 137 1 6 1468 1152 123 15 60 chr4 115780177 115780219 -39849901 - B2_Mm2 SINE B2 -158 37 1 6 1468 1557 47 21 0 chr4 115780419 115780610 -39849510 + B2_Mm2 SINE B2 1 195 0 6 1468 1626 52 0 0 chr4 115780618 115780810 -39849310 + B2_Mm1t SINE B2 2 193 0 6 1468 213 273 182 0 chr4 115781004 115781092 -39849028 + PB1D10 SINE Alu 1 104 -13 6 1468 361 131 325 61 chr4 115781462 115781576 -39848544 - B2_Mm2 SINE B2 -5 190 47 6 1468 1200 105 11 11 chr4 115781592 115781766 -39848354 - B2_Mm1t SINE B2 -18 175 2 6 1468 543 283 47 84 chr4 115781892 115782166 -39847954 - MIRb SINE MIR -3 265 2 6 1468 716 172 46 15 chr4 115782266 115782396 -39847724 - B1_Mur1 SINE Alu -1 148 15 6 1468 189 0 0 0 chr4 115784539 115784560 -39845560 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 6 1468 421 309 9 9 chr4 115784573 115784684 -39845436 + PB1D10 SINE Alu 2 112 -5 6 1468 399 289 109 45 chr4 115784689 115784820 -39845300 + B3A SINE B2 4 148 -50 6 1468 477 34 0 0 chr4 115784820 115784879 -39845241 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1468 399 289 109 45 chr4 115784879 115784903 -39845217 + B3A SINE B2 149 169 -29 6 1468 585 196 0 43 chr4 115784900 115785017 -39845103 + B1_Mur3 SINE Alu 35 146 -3 6 1468 33 0 0 0 chr4 115785215 115785248 -39844872 + AT_rich Low_complexity Low_complexity 1 33 0 6 1468 1224 41 0 20 chr4 115785332 115785344 -39844776 - B1_Mus2 SINE Alu 0 147 138 6 1468 189 74 0 0 chr4 115785344 115785371 -39844749 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1468 1224 41 0 20 chr4 115785371 115785508 -39844612 - B1_Mus2 SINE Alu -10 137 1 6 1468 354 283 68 39 chr4 115785683 115785786 -39844334 - PB1D10 SINE Alu -14 106 1 6 1468 195 95 0 125 chr4 115785796 115785844 -39844276 - MIR SINE MIR -73 189 148 6 1468 238 281 8 149 chr4 115785844 115785978 -39844142 + MT2B2 LTR ERVL 167 281 -303 6 1468 635 255 20 62 chr4 115785953 115786117 -39844003 + ID_B1 SINE B4 81 245 -47 6 1468 467 240 142 66 chr4 115786117 115786300 -39843820 + B3 SINE B2 5 201 -15 6 1468 284 330 65 106 chr4 115786300 115786352 -39843768 + B4A SINE B4 246 292 0 6 1468 322 195 0 22 chr4 115786352 115786441 -39843679 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 1468 394 291 71 43 chr4 115786454 115786594 -39843526 + RSINE1 SINE B4 21 164 -1 6 1468 558 254 0 33 chr4 115787198 115787320 -39842800 - PB1D7 SINE Alu 0 120 3 6 1468 486 279 36 7 chr4 115787614 115787751 -39842369 - B1F SINE Alu -8 141 1 6 1468 1017 128 0 7 chr4 115787775 115787924 -39842196 - B1_Mur4 SINE Alu 0 150 3 6 1468 820 179 0 7 chr4 115788019 115788154 -39841966 + B1_Mur3 SINE Alu 16 149 0 6 1468 220 236 18 0 chr4 115788154 115788209 -39841911 + GA-rich Low_complexity Low_complexity 2 57 0 6 1468 275 257 57 54 chr4 115788217 115788333 -39841787 + B1F2 SINE Alu 1 118 -2 6 1468 931 203 68 19 chr4 115788768 115788974 -39841146 - B3 SINE B2 0 216 1 6 1468 226 146 0 24 chr4 115789033 115789075 -39841045 + GA-rich Low_complexity Low_complexity 3 43 0 6 1468 234 200 9 224 chr4 115789393 115789509 -39840611 + RLTR25B LTR ERVK 403 493 -535 6 1468 347 137 33 29 chr4 115789458 115789529 -39840591 + B1_Mur4 SINE Alu 43 114 -6 6 1468 459 0 0 0 chr4 115789529 115789580 -39840540 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1468 549 164 159 32 chr4 115789627 115789753 -39840367 + B1_Mus2 SINE Alu 5 146 -1 6 1468 1158 69 0 0 chr4 115789757 115789902 -39840218 + B1_Mus2 SINE Alu 2 146 -1 6 1468 215 79 26 0 chr4 115789902 115789940 -39840180 + (GAAAA)n Simple_repeat Simple_repeat 1 39 0 6 1468 748 186 149 0 chr4 115789959 115790120 -39840000 + B3 SINE B2 27 211 -5 6 1468 487 280 0 10 chr4 115790236 115790337 -39839783 + RSINE1 SINE B4 32 131 -34 6 1468 252 0 0 0 chr4 115790346 115790374 -39839746 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1468 426 239 61 9 chr4 115790419 115790533 -39839587 + PB1D9 SINE Alu 1 120 0 6 1468 410 187 0 11 chr4 115790537 115790629 -39839491 + GA-rich Low_complexity Low_complexity 3 93 0 6 1468 401 295 60 7 chr4 115790683 115790833 -39839287 - L1MEf LINE L1 -4122 2078 1921 6 1468 386 237 13 0 chr4 115790842 115790918 -39839202 + ID_B1 SINE B4 80 156 -68 6 1468 598 203 15 68 chr4 115790924 115791056 -39839064 + B3 SINE B2 28 152 -64 6 1468 486 0 0 0 chr4 115791056 115791110 -39839010 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1468 265 125 41 20 chr4 115791126 115791175 -39838945 + ID_B1 SINE B4 175 224 0 6 1468 329 178 320 0 chr4 115791624 115791715 -39838405 - B1_Mm SINE Alu -26 123 2 6 1468 192 368 10 10 chr4 115791716 115791812 -39838308 + MIRb SINE MIR 123 218 -50 6 1468 1551 63 0 0 chr4 115791816 115792006 -39838114 + B2_Mm1a SINE B2 1 190 -3 6 1468 288 0 0 0 chr4 115792057 115792089 -39838031 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1468 938 62 115 0 chr4 115792101 115792231 -39837889 + B1_Mus2 SINE Alu 2 146 -1 6 1468 525 242 117 0 chr4 115792263 115792391 -39837729 - ID_B1 SINE B4 0 224 82 6 1468 242 272 104 117 chr4 115792267 115792421 -39837699 + YREP_Mm Unknown Unknown 181 332 -1480 6 1468 3716 199 75 109 chr4 115792421 115792514 -39837606 - RMER1A Other Other -27 1003 885 6 1468 1149 56 0 0 chr4 115792514 115792656 -39837464 + B1_Mus1 SINE Alu 2 143 -5 6 1468 3716 199 75 109 chr4 115792656 115793554 -39836566 - RMER1A Other Other -146 884 46 6 1468 1067 78 45 0 chr4 115793621 115793775 -39836345 + B2_Mm2 SINE B2 30 190 -5 6 1468 326 292 20 59 chr4 115794024 115794126 -39835994 + ID_B1 SINE B4 119 216 -8 6 1468 232 332 78 91 chr4 115794259 115794501 -39835619 + MT2B LTR ERVL 40 278 -323 6 1468 546 211 118 31 chr4 115794403 115794530 -39835590 + B1_Mur1 SINE Alu 12 149 0 6 1468 459 200 97 32 chr4 115794541 115794665 -39835455 + B1_Mur3 SINE Alu 1 132 -17 6 1468 281 258 15 0 chr4 115794691 115794757 -39835363 - ID_B1 SINE B4 0 224 158 6 1468 1492 54 16 0 chr4 115794904 115795088 -39835032 - B2_Mm2 SINE B2 -8 187 1 6 1468 815 171 7 14 chr4 115795157 115795305 -39834815 + B1_Mur4 SINE Alu 2 148 -2 6 1468 225 0 0 0 chr4 115795400 115795425 -39834695 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1468 599 222 48 0 chr4 115796900 115797026 -39833094 + B1_Mur2 SINE Alu 1 132 -17 6 1468 387 0 0 0 chr4 115797208 115797251 -39832869 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1468 318 205 24 71 chr4 115797315 115797399 -39832721 - PB1D10 SINE Alu -1 116 37 6 1468 262 264 0 0 chr4 115797568 115797621 -39832499 + PB1D7 SINE Alu 60 112 -8 6 1468 609 246 14 34 chr4 115797646 115797793 -39832327 + RSINE1 SINE B4 22 165 0 6 1468 189 211 0 0 chr4 115797875 115797927 -39832193 + T-rich Low_complexity Low_complexity 1 52 0 6 1468 1156 75 0 7 chr4 115797927 115798074 -39832046 - B1_Mus2 SINE Alu 0 147 2 6 1468 242 306 16 12 chr4 115798112 115798196 -39831924 - B1F2 SINE Alu -66 83 2 6 1468 1460 74 11 0 chr4 115798817 115799007 -39831113 + B2_Mm1t SINE B2 1 192 -1 6 1468 206 132 37 19 chr4 115799083 115799137 -39830983 + (GTTTG)n Simple_repeat Simple_repeat 2 56 0 6 1468 464 208 29 38 chr4 115799160 115799265 -39830855 - PB1D10 SINE Alu -13 104 1 6 1468 894 139 7 14 chr4 115799388 115799534 -39830586 + B1_Mur3 SINE Alu 5 149 0 6 1468 1206 180 24 19 chr4 115799551 115799761 -39830359 + B3 SINE B2 1 211 -5 7 1468 342 281 0 11 chr4 115799815 115799905 -39830215 + B3A SINE B2 1 89 -109 7 1468 255 208 0 20 chr4 115799909 115799958 -39830162 - PB1D9 SINE Alu -67 53 6 7 1468 21 0 0 0 chr4 115800014 115800035 -39830085 + AT_rich Low_complexity Low_complexity 1 21 0 7 1468 210 37 0 0 chr4 115800035 115800062 -39830058 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1468 1179 69 0 0 chr4 115800062 115800206 -39829914 - B1_Mus1 SINE Alu -3 145 2 7 1468 277 118 108 81 chr4 115800425 115800499 -39829621 - MT2B LTR ERVL -350 251 176 7 1468 349 161 36 0 chr4 115800445 115800501 -39829619 - B1_Mur4 SINE Alu -82 68 11 7 1468 303 217 34 57 chr4 115800501 115800525 -39829595 - B4 SINE B4 -131 142 76 7 1468 633 125 26 43 chr4 115801233 115801343 -39828777 - RLTR24 LTR ERV1 0 529 422 7 1468 1428 214 53 19 chr4 115801343 115801666 -39828454 + RLTR12B LTR ERVK 1 334 -194 7 1468 1115 95 0 0 chr4 115801667 115801815 -39828305 + B1_Mus1 SINE Alu 1 148 0 7 1468 2330 136 12 67 chr4 115801823 115802241 -39827879 - RLTR24 LTR ERV1 -134 395 1 7 1468 418 119 0 0 chr4 115802278 115802337 -39827783 + B3 SINE B2 25 83 -133 7 1468 220 288 135 14 chr4 115802405 115802479 -39827641 - RSINE1 SINE B4 -73 92 10 7 1468 239 138 46 81 chr4 115802480 115802567 -39827553 + T-rich Low_complexity Low_complexity 2 85 0 7 1468 1197 49 0 7 chr4 115802573 115802716 -39827404 - B1_Mus2 SINE Alu -5 142 1 7 1468 1287 72 77 11 chr4 115802730 115802912 -39827208 - B2_Mm2 SINE B2 0 195 2 7 1468 957 142 0 0 chr4 115802937 115803078 -39827042 - B2_Mm2 SINE B2 -54 141 1 7 1468 458 207 26 26 chr4 115803090 115803204 -39826916 - PB1D9 SINE Alu -5 115 2 7 1468 748 274 68 104 chr4 115803279 115803528 -39826592 - B4 SINE B4 -2 290 51 7 1468 443 319 49 7 chr4 115803537 115803679 -39826441 + RSINE1 SINE B4 9 156 -9 7 1468 682 263 45 49 chr4 115803784 115804008 -39826112 - ID_B1 SINE B4 -1 223 1 7 1468 1304 27 0 0 chr4 115804037 115804183 -39825937 - B1_Mm SINE Alu 0 147 2 7 1468 747 239 22 33 chr4 115804199 115804381 -39825739 + B3A SINE B2 3 182 -16 7 1468 531 195 222 19 chr4 115804410 115804572 -39825548 - B3A SINE B2 -3 195 1 7 1468 23 0 0 0 chr4 115804578 115804601 -39825519 + AT_rich Low_complexity Low_complexity 1 23 0 7 1468 246 310 77 97 chr4 115804739 115804764 -39825356 + MT2B LTR ERVL 51 85 -516 7 1468 311 215 31 0 chr4 115804764 115804829 -39825291 + PB1D7 SINE Alu 41 107 -13 7 1468 246 310 77 97 chr4 115804829 115804946 -39825174 + MT2B LTR ERVL 86 253 -348 7 1468 628 260 44 5 chr4 115804847 115805004 -39825116 + ID_B1 SINE B4 79 240 -52 7 1468 23 33 0 0 chr4 115805539 115805569 -39824551 + AT_rich Low_complexity Low_complexity 1 30 0 7 1468 334 291 0 0 chr4 115805760 115805839 -39824281 - PB1D10 SINE Alu -37 80 2 7 1468 266 250 0 0 chr4 115805848 115805904 -39824216 + MLT1D LTR MaLR 450 505 0 7 1468 653 236 21 0 chr4 115806710 115806854 -39823266 + B1F SINE Alu 1 147 -2 7 1468 857 194 0 7 chr4 115806874 115807014 -39823106 + B1_Mur2 SINE Alu 3 141 -8 7 1468 543 157 100 115 chr4 115807359 115807489 -39822631 - ID_B1 SINE B4 -13 211 84 7 1468 573 211 0 17 chr4 115808270 115808386 -39821734 - PB1D9 SINE Alu -6 114 1 7 1468 827 145 27 20 chr4 115808882 115809030 -39821090 + B1_Mur4 SINE Alu 1 149 -1 7 1468 218 235 13 105 chr4 115810602 115810678 -39819442 + ID SINE ID 15 83 -141 7 1468 609 124 215 0 chr4 115810690 115810811 -39819309 + B1_Mus1 SINE Alu 1 147 -1 7 1468 227 367 10 40 chr4 115810841 115810927 -39819193 + MIR SINE MIR 63 154 -114 7 1468 784 88 176 0 chr4 115810927 115811052 -39819068 + B1_Mus1 SINE Alu 1 147 -1 7 1468 215 366 10 41 chr4 115811052 115811065 -39819055 + MIRb SINE MIR 155 165 -103 7 1468 1107 208 19 0 chr4 115811200 115811412 -39818708 + ID_B1 SINE B4 1 216 -8 7 1468 200 119 47 23 chr4 115811414 115811457 -39818663 + A-rich Low_complexity Low_complexity 4 47 0 7 1468 542 190 75 43 chr4 115811457 115811604 -39818516 + B1F2 SINE Alu 13 147 -2 7 1468 276 231 46 0 chr4 115811642 115811707 -39818413 + B3 SINE B2 1 68 -148 7 1468 1006 139 0 46 chr4 115811747 115811920 -39818200 + B2_Mm2 SINE B2 1 165 -30 7 1468 1376 172 205 15 chr4 115811941 115812272 -39817848 + ORR1B1 LTR MaLR 1 394 0 7 1468 678 196 14 27 chr4 115812744 115812891 -39817229 - B1_Mur1 SINE Alu -2 147 3 7 1468 386 260 52 10 chr4 115812942 115813039 -39817081 + ID_B1 SINE B4 68 168 -56 7 1468 222 226 88 70 chr4 115813107 115813164 -39816956 - B1_Mus1 SINE Alu -90 58 1 7 1468 636 232 70 23 chr4 115813165 115813337 -39816783 + B3 SINE B2 32 211 -5 7 1468 236 296 47 47 chr4 115813571 115813656 -39816464 - 7SLRNA srpRNA srpRNA -228 86 2 7 1468 738 172 62 0 chr4 115813586 115813731 -39816389 - ID_B1 SINE B4 -70 154 1 7 1468 387 208 83 0 chr4 115815068 115815164 -39814956 + MIR SINE MIR 38 141 -121 7 1468 988 219 20 10 chr4 115815280 115815483 -39814637 + B3 SINE B2 3 207 -9 7 1468 544 239 0 25 chr4 115815569 115815689 -39814431 + PB1D10 SINE Alu 1 117 0 7 1468 23 0 0 0 chr4 115817192 115817215 -39812905 + GC_rich Low_complexity Low_complexity 1 23 0 7 1468 193 246 32 16 chr4 115817624 115817686 -39812434 + L3 LINE CR1 710 772 -3717 7 1468 624 159 175 0 chr4 115817758 115817884 -39812236 - B1_Mus1 SINE Alu 0 148 1 7 1468 582 205 68 8 chr4 115817884 115818002 -39812118 - B1_Mur1 SINE Alu -1 148 24 7 1468 694 263 39 39 chr4 115818052 115818234 -39811886 - B3A SINE B2 -8 190 9 7 1468 288 0 0 0 chr4 115818234 115818266 -39811854 + (CCCCAG)n Simple_repeat Simple_repeat 5 36 0 7 1468 1302 82 5 26 chr4 115818281 115818470 -39811650 - B2_Mm1a SINE B2 -6 187 3 7 1468 232 306 28 0 chr4 115818471 115818543 -39811577 - MER5A1 DNA MER1_type -92 74 1 7 1468 1199 36 14 0 chr4 115818598 115818738 -39811382 + B1_Mus2 SINE Alu 1 142 -5 7 1468 212 0 36 0 chr4 115818739 115818767 -39811353 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1468 369 0 0 0 chr4 115818953 115818994 -39811126 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1468 684 325 14 29 chr4 115819021 115819238 -39810882 - B3A SINE B2 0 216 2 7 1468 236 167 133 0 chr4 115819343 115819403 -39810717 - B1F2 SINE Alu -70 79 12 7 1468 220 277 15 15 chr4 115819365 115819431 -39810689 - B4 SINE B4 -158 134 69 7 1468 457 238 84 119 chr4 115819428 115819501 -39810619 - ID_B1 SINE B4 0 224 149 7 1468 1663 31 5 0 chr4 115819501 115819692 -39810428 - B2_Mm1t SINE B2 -1 192 1 7 1468 1338 103 11 0 chr4 115819697 115819882 -39810238 - B2_Mm1t SINE B2 -5 188 2 7 1468 457 238 84 119 chr4 115819882 115819945 -39810175 - ID_B1 SINE B4 -76 148 87 7 1468 2052 178 5 37 chr4 115819978 115820358 -39809762 + ORR1D1 LTR MaLR 1 368 -6 7 1468 922 163 14 0 chr4 115820507 115820654 -39809466 - B1_Mur4 SINE Alu 0 150 2 7 1468 477 122 0 0 chr4 115820670 115820744 -39809376 + (TC)n Simple_repeat Simple_repeat 2 75 0 7 1468 905 67 0 24 chr4 115820765 115820888 -39809232 - B1_Mus1 SINE Alu 0 148 29 7 1468 1380 55 37 42 chr4 115821814 115822003 -39808117 - B2_Mm2 SINE B2 -7 188 1 7 1468 510 281 22 7 chr4 115822068 115822204 -39807916 - B1F1 SINE Alu 0 149 12 7 1468 741 199 7 66 chr4 115822373 115822524 -39807596 + B1_Mur2 SINE Alu 2 143 -6 7 1468 365 211 233 27 chr4 115822534 115822680 -39807440 + B3A SINE B2 1 176 -22 7 1468 22 0 0 0 chr4 115823015 115823037 -39807083 + GC_rich Low_complexity Low_complexity 1 22 0 7 1468 203 61 30 0 chr4 115823065 115823098 -39807022 + (CGG)n Simple_repeat Simple_repeat 3 36 0 7 1468 25 0 0 0 chr4 115823098 115823123 -39806997 + GC_rich Low_complexity Low_complexity 1 25 0 7 1468 31 82 0 0 chr4 115823143 115823216 -39806904 + GC_rich Low_complexity Low_complexity 1 73 0 7 1468 206 242 43 56 chr4 115823480 115823603 -39806517 - MIRm SINE MIR -84 192 69 7 1468 298 250 99 33 chr4 115825711 115825802 -39804318 - L2b LINE L2 -35 3340 3244 7 1468 374 281 176 7 chr4 115828857 115828993 -39801127 + MIR SINE MIR 5 163 -99 7 1468 249 208 0 0 chr4 115829113 115829161 -39800959 + B1_Mus1 SINE Alu 27 74 -74 7 1468 258 203 152 0 chr4 115829286 115829345 -39800775 + B1_Mus1 SINE Alu 20 87 -61 7 1468 864 188 123 15 chr4 115829381 115829576 -39800544 - B3 SINE B2 0 216 1 7 1468 895 256 0 0 chr4 115829595 115829767 -39800353 - B3 SINE B2 -6 210 39 7 1468 1012 134 7 7 chr4 115829770 115829920 -39800200 + B1_Mur4 SINE Alu 1 150 0 7 1468 253 174 0 21 chr4 115830225 115830272 -39799848 - ID_B1 SINE B4 -58 166 121 7 1468 275 298 42 11 chr4 115830871 115830966 -39799154 - MER45A DNA Tip100 -23 155 58 7 1468 814 129 35 21 chr4 115831301 115831444 -39798676 + B1_Mus2 SINE Alu 2 146 -1 7 1468 278 241 30 121 chr4 115832951 115833050 -39797070 + Charlie4z DNA MER1_type 54 143 -24 7 1468 775 196 0 0 chr4 115833806 115833939 -39796181 - B1_Mus1 SINE Alu -5 143 11 7 1468 613 243 68 145 chr4 115834079 115834253 -39795867 + ID_B1 SINE B4 3 184 -40 7 1468 1251 48 0 0 chr4 115834253 115834399 -39795721 + B1_Mus2 SINE Alu 2 147 0 7 1468 613 243 68 145 chr4 115834399 115834445 -39795675 + ID_B1 SINE B4 185 206 -18 7 1468 319 200 0 0 chr4 115834483 115834533 -39795587 + B1_Mus2 SINE Alu 2 51 -96 7 1468 246 288 45 0 chr4 115835738 115835804 -39794316 + BC1_Mm scRNA scRNA 17 85 -67 8 1468 763 120 0 11 chr4 115836090 115836214 -39793906 + B1_Mur3 SINE Alu 25 147 -2 8 1468 289 208 0 0 chr4 115839088 115839141 -39790979 - ID4 SINE ID -30 53 1 8 1468 1521 58 0 16 chr4 115840563 115840755 -39789365 + B2_Mm1a SINE B2 1 189 -4 8 1468 1663 21 5 0 chr4 115840755 115840943 -39789177 + B2_Mm1t SINE B2 2 190 -3 8 1468 1126 82 0 33 chr4 115840995 115841147 -39788973 - B1_Mus1 SINE Alu 0 148 2 8 1468 309 297 0 0 chr4 115841245 115841400 -39788720 + (CA)n Simple_repeat Simple_repeat 1 155 0 8 1468 417 86 0 0 chr4 115841506 115841564 -39788556 + (TCC)n Simple_repeat Simple_repeat 3 60 0 8 1468 674 198 125 51 chr4 115841572 115841748 -39788372 - B3 SINE B2 -27 189 1 8 1468 198 219 0 24 chr4 115841961 115842003 -39788117 + MIRb SINE MIR 62 102 -166 8 1468 702 183 40 40 chr4 115842034 115842182 -39787938 - B1_Mur2 SINE Alu 0 149 2 8 1468 251 68 0 64 chr4 115842183 115842216 -39787904 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 8 1468 1459 59 5 16 chr4 115842216 115842405 -39787715 - B2_Mm1a SINE B2 -6 187 1 8 1468 251 68 0 64 chr4 115842405 115842418 -39787702 + (TTTA)n Simple_repeat Simple_repeat 2 12 0 8 1468 759 221 111 0 chr4 115842429 115842619 -39787501 - B3 SINE B2 -5 211 1 8 1468 207 0 0 0 chr4 115842619 115842642 -39787478 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 8 1468 500 202 110 0 chr4 115842679 115842788 -39787332 - B1_Mm SINE Alu -25 122 2 8 1468 322 243 68 59 chr4 115842788 115842906 -39787214 - PB1D7 SINE Alu -1 119 1 8 1468 310 281 0 35 chr4 115842906 115842980 -39787140 - PB1D10 SINE Alu -45 72 1 8 1468 263 313 0 0 chr4 115843148 115843215 -39786905 - ID SINE ID -151 73 7 8 1468 544 269 0 27 chr4 115843249 115843398 -39786722 - B1F1 SINE Alu 0 149 5 8 1468 325 251 388 8 chr4 115843439 115843574 -39786546 - B3A SINE B2 -11 187 2 8 1468 233 330 52 52 chr4 115843649 115843764 -39786356 + B4A SINE B4 77 191 -101 8 1468 481 280 0 25 chr4 115843661 115843782 -39786338 + PB1 SINE Alu 10 127 0 8 1468 332 247 35 0 chr4 115843787 115843872 -39786248 + PB1D9 SINE Alu 2 89 -31 8 1468 221 328 40 113 chr4 115844007 115844158 -39785962 - B1_Mur4 SINE Alu -2 148 9 8 1468 313 258 53 98 chr4 115844026 115844159 -39785961 - ID_B1 SINE B4 -7 217 91 8 1468 1029 52 82 0 chr4 115844205 115844340 -39785780 - B1_Mus2 SINE Alu -1 146 1 8 1468 310 268 30 42 chr4 115844341 115844451 -39785669 - MIRc SINE MIR -114 154 48 8 1468 448 331 58 65 chr4 115844958 115845249 -39784871 - MER82 DNA MER2_type -2 651 363 8 1468 325 250 115 0 chr4 115845269 115845373 -39784747 - MER82 DNA MER2_type -272 381 266 8 1468 1030 136 0 0 chr4 115845410 115845557 -39784563 - B1_Mus2 SINE Alu 0 147 1 8 1468 271 246 14 28 chr4 115845557 115845628 -39784492 - MER82 DNA MER2_type -581 72 3 8 1468 422 289 31 0 chr4 115845628 115845756 -39784364 + MIR SINE MIR 131 262 0 8 1468 603 251 142 6 chr4 115846526 115846702 -39783418 - B4 SINE B4 -92 200 1 8 1468 320 302 0 0 chr4 115848226 115848332 -39781788 + (CA)n Simple_repeat Simple_repeat 2 107 0 8 1468 253 250 0 0 chr4 115848414 115848486 -39781634 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1468 186 43 0 0 chr4 115849687 115849710 -39780410 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1468 351 0 0 0 chr4 115850499 115850538 -39779582 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1468 311 281 169 57 chr4 115850796 115850821 -39779299 + L1MD LINE L1 3074 3094 -3052 8 1468 416 261 8 17 chr4 115850821 115850938 -39779182 + PB1 SINE Alu 5 120 -7 8 1468 311 281 169 57 chr4 115850938 115851089 -39779031 + L1MD LINE L1 3095 3270 -2876 8 1468 374 256 11 11 chr4 115851182 115851269 -39778851 + ID_B1 SINE B4 138 224 0 8 1468 401 149 0 43 chr4 115851292 115851362 -39778758 + B1_Mur1 SINE Alu 82 148 -1 8 1468 180 97 0 0 chr4 115851386 115851417 -39778703 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1468 924 121 134 0 chr4 115851422 115851579 -39778541 + B2_Mm1t SINE B2 2 179 -14 8 1468 333 119 355 18 chr4 115851646 115851756 -39778364 + B2_Mm2 SINE B2 48 194 -1 8 1468 424 205 12 35 chr4 115852101 115852187 -39777933 - B1F SINE Alu -1 148 65 8 1468 303 288 41 96 chr4 115852202 115852421 -39777699 - RMER17C LTR ERVK -54 356 150 8 1468 336 208 0 0 chr4 115852581 115852677 -39777443 + CT-rich Low_complexity Low_complexity 2 97 0 8 1468 270 152 22 0 chr4 115852693 115852739 -39777381 - PB1D9 SINE Alu -66 54 8 8 1468 263 191 0 0 chr4 115853053 115853100 -39777020 + MIR SINE MIR 77 123 -85 8 1468 246 29 0 0 chr4 115853160 115853195 -39776925 - B1_Mur4 SINE Alu 0 150 116 8 1468 936 146 0 0 chr4 115853215 115853345 -39776775 - B1_Mur2 SINE Alu -19 130 1 8 1468 1152 75 7 0 chr4 115853538 115853685 -39776435 + B1_Mus1 SINE Alu 1 148 0 8 1468 716 69 0 19 chr4 115853692 115853796 -39776324 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 8 1468 221 280 0 39 chr4 115853828 115853880 -39776240 - ID4_ SINE ID -10 73 24 8 1468 240 424 8 8 chr4 115853898 115854024 -39776096 - MIRm SINE MIR -109 167 42 8 1468 640 209 96 15 chr4 115854595 115854731 -39775389 - B1F1 SINE Alu 0 149 3 8 1468 188 88 0 56 chr4 115854982 115855018 -39775102 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 8 1468 738 149 9 0 chr4 115855018 115855132 -39774988 - B1_Mus1 SINE Alu 0 148 34 8 1468 213 39 0 0 chr4 115855154 115855180 -39774940 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1468 734 40 10 20 chr4 115855180 115855282 -39774838 - B1_Mus2 SINE Alu 0 147 47 8 1468 306 0 0 0 chr4 115855335 115855369 -39774751 + (TC)n Simple_repeat Simple_repeat 1 34 0 8 1468 423 280 8 41 chr4 115856123 115856246 -39773874 + PB1 SINE Alu 9 127 0 8 1468 948 180 84 6 chr4 115856263 115856442 -39773678 + B3 SINE B2 3 195 -21 8 1468 202 349 62 16 chr4 115856481 115856609 -39773511 + MIRb SINE MIR 53 186 -82 8 1468 1114 43 35 0 chr4 115856637 115856778 -39773342 + B1_Mus2 SINE Alu 2 147 0 8 1468 227 171 0 0 chr4 115857279 115857314 -39772806 - ORR1E LTR MaLR -1 358 324 8 1468 243 269 40 79 chr4 115857444 115857545 -39772575 - ORR1D1 LTR MaLR -259 115 19 8 1468 356 262 0 48 chr4 115858555 115858639 -39771481 + RSINE1 SINE B4 58 137 -28 8 1468 590 119 237 0 chr4 115858741 115858859 -39771261 + B1_Mur1 SINE Alu 3 148 -1 8 1468 610 299 80 29 chr4 115858868 115859106 -39771014 - B4A SINE B4 -3 289 40 8 1468 716 302 31 0 chr4 115859144 115859336 -39770784 + B4A SINE B4 9 206 -86 8 1468 884 150 13 20 chr4 115859345 115859495 -39770625 + B1_Mur3 SINE Alu 1 149 0 8 1468 846 99 191 36 chr4 115859500 115859640 -39770480 + B2_Mm2 SINE B2 2 165 -30 8 1468 453 19 0 0 chr4 115859640 115859694 -39770426 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 8 1468 846 99 191 36 chr4 115859694 115859721 -39770399 + B2_Mm2 SINE B2 166 195 0 8 1468 657 262 21 0 chr4 115859742 115859887 -39770233 + B1_Mur1 SINE Alu 2 149 0 8 1468 312 27 0 0 chr4 115859895 115859932 -39770188 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1468 1270 27 0 0 chr4 115859932 115860079 -39770041 - B1_Mus2 SINE Alu 0 147 1 8 1468 662 227 134 11 chr4 115860086 115860273 -39769847 - B3 SINE B2 -6 210 1 8 1468 3176 33 0 8 chr4 115860330 115860698 -39769422 + RLTR10B2 LTR ERVK 1 365 0 8 1468 793 143 0 0 chr4 115860698 115860810 -39769310 + B1_Mur2 SINE Alu 29 140 -9 8 1468 237 65 0 0 chr4 115860810 115860841 -39769279 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1468 414 0 0 0 chr4 115860880 115860926 -39769194 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 8 1468 333 0 0 0 chr4 115860990 115861027 -39769093 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1468 359 238 115 29 chr4 115861048 115861152 -39768968 + PB1 SINE Alu 13 125 -2 8 1468 366 238 24 24 chr4 115861201 115861283 -39768837 + B3 SINE B2 135 216 0 8 1468 552 220 13 72 chr4 115861321 115861473 -39768647 + B1_Mur1 SINE Alu 5 147 -2 8 1468 404 358 24 0 chr4 115861536 115861659 -39768461 + PB1 SINE Alu 2 127 0 8 1468 185 94 0 30 chr4 115861704 115861737 -39768383 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 8 1468 1208 68 0 0 chr4 115861860 115862007 -39768113 - B1_Mus2 SINE Alu 0 147 1 8 1468 7674 85 24 8 chr4 115862008 115863331 -39766789 - L1_Mus3 LINE L1 -6 6632 5288 8 1468 1176 78 0 0 chr4 115863331 115863473 -39766647 - B1_Mus2 SINE Alu -5 142 1 8 1468 6511 91 16 37 chr4 115863473 115863838 -39766282 - L1_Mus3 LINE L1 -596 5287 4952 8 1468 586 214 14 51 chr4 115863844 115863982 -39766138 + B1_Mur1 SINE Alu 17 149 0 8 1468 180 0 0 0 chr4 115864033 115864053 -39766067 + (TTAAG)n Simple_repeat Simple_repeat 1 20 0 8 1468 336 305 50 170 chr4 115864068 115864175 -39765945 + RSINE1 SINE B4 4 99 -66 8 1468 1232 54 0 0 chr4 115864175 115864322 -39765798 - B1_Mm SINE Alu 0 147 1 8 1468 336 305 50 170 chr4 115864322 115864396 -39765724 + RSINE1 SINE B4 100 163 -2 8 1468 322 305 47 9 chr4 115864500 115864518 -39765602 - B4 SINE B4 -70 222 113 8 1468 474 230 0 11 chr4 115864518 115864606 -39765514 - B1_Mur1 SINE Alu -35 114 28 8 1468 845 121 0 36 chr4 115864612 115864749 -39765371 - B1_Mur3 SINE Alu -9 140 9 8 1468 452 269 6 70 chr4 115864749 115864768 -39765352 - ID_B1 SINE B4 -9 215 70 8 1468 225 0 0 0 chr4 115864932 115864957 -39765163 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1468 310 146 0 0 chr4 115864957 115865005 -39765115 - B3 SINE B2 -154 62 15 9 1468 1061 89 7 27 chr4 115865869 115866019 -39764101 - B1_Mus1 SINE Alu 0 148 2 9 1468 1364 73 11 6 chr4 115866034 115866214 -39763906 - B2_Mm2 SINE B2 -14 181 1 9 1468 538 272 85 13 chr4 115866246 115866399 -39763721 - RSINE1 SINE B4 0 165 2 9 1468 183 100 0 0 chr4 115866507 115866537 -39763583 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9 1468 603 198 156 16 chr4 115867053 115867181 -39762939 + B1F SINE Alu 4 149 0 9 1468 507 189 96 35 chr4 115867186 115867301 -39762819 + B3A SINE B2 1 122 -76 9 1468 320 0 25 0 chr4 115867316 115867356 -39762764 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1468 21 36 0 0 chr4 115867400 115867428 -39762692 + AT_rich Low_complexity Low_complexity 1 28 0 9 1468 676 180 156 0 chr4 115867431 115867553 -39762567 + B1_Mus2 SINE Alu 1 141 -6 9 1469 338 204 34 162 chr4 115867682 115867799 -39762321 + RSINE1 SINE B4 2 103 -62 9 1469 399 78 10 10 chr4 115867812 115867913 -39762207 - B2_Mm2 SINE B2 0 195 47 9 1469 1148 129 11 22 chr4 115867960 115868142 -39761978 - B2_Mm1t SINE B2 -12 181 2 9 1469 1045 60 232 0 chr4 115868280 115868431 -39761689 + B2_Mm2 SINE B2 1 186 -9 9 1469 1689 21 0 0 chr4 115868433 115868623 -39761497 + B2_Mm1a SINE B2 2 191 -2 9 1469 412 267 33 33 chr4 115868807 115868927 -39761193 - B1_Mur2 SINE Alu -1 148 29 9 1469 1148 76 0 0 chr4 115868949 115869093 -39761027 - B1_Mus2 SINE Alu -1 146 3 9 1469 266 150 0 0 chr4 115869094 115869134 -39760986 - B2_Mm2 SINE B2 -154 41 2 9 1469 576 323 11 52 chr4 115869334 115869541 -39760579 + ID_B1 SINE B4 44 237 -55 9 1469 696 240 7 27 chr4 115869551 115869701 -39760419 + RSINE1 SINE B4 19 165 0 9 1469 570 118 78 10 chr4 115869707 115869810 -39760310 - B2_Mm2 SINE B2 -5 190 81 9 1469 230 93 564 39 chr4 115869813 115869886 -39760234 + B2_Mm2 SINE B2 64 172 -23 9 1469 1643 26 21 0 chr4 115869886 115870075 -39760045 + B2_Mm1a SINE B2 1 193 0 9 1469 230 85 48 63 chr4 115870075 115870092 -39760028 + B2_Mm2 SINE B2 173 192 -3 9 1469 189 0 0 0 chr4 115870092 115870113 -39760007 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 1469 245 29 0 29 chr4 115870364 115870399 -39759721 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1469 1146 68 0 26 chr4 115870404 115870555 -39759565 - B1_Mm SINE Alu 0 147 1 9 1469 1431 73 11 0 chr4 115870560 115870751 -39759369 - B2_Mm1t SINE B2 0 193 1 9 1469 494 188 53 18 chr4 115870787 115870901 -39759219 + PB1D9 SINE Alu 1 118 -2 9 1469 27 0 0 0 chr4 115870910 115870937 -39759183 + AT_rich Low_complexity Low_complexity 1 27 0 9 1469 761 197 115 20 chr4 115871136 115871319 -39758801 - B3 SINE B2 -3 213 1 9 1469 705 12 0 0 chr4 115871378 115871460 -39758660 + (CA)n Simple_repeat Simple_repeat 2 83 0 9 1469 358 234 83 21 chr4 115871465 115871561 -39758559 - B3 SINE B2 -114 102 1 9 1469 911 171 7 0 chr4 115871606 115871752 -39758368 - B1_Mus1 SINE Alu -1 147 1 9 1469 309 278 0 32 chr4 115872370 115872463 -39757657 + PB1 SINE Alu 31 120 -7 9 1469 700 235 79 32 chr4 115872567 115872756 -39757364 - B3A SINE B2 0 198 1 9 1469 204 40 0 0 chr4 115872975 115873000 -39757120 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 9 1469 885 142 7 34 chr4 115873001 115873147 -39756973 - B1_Mur3 SINE Alu -7 142 1 9 1469 290 277 15 0 chr4 115873605 115873670 -39756450 + ID_B1 SINE B4 27 92 -132 9 1469 868 231 155 36 chr4 115873679 115873930 -39756190 + B4A SINE B4 12 292 0 9 1469 277 208 23 115 chr4 115873911 115873998 -39756122 - RMER12 LTR ERVK -495 827 749 9 1469 668 271 28 14 chr4 115873974 115874147 -39755973 + ID_B1 SINE B4 80 258 -34 9 1469 237 255 119 69 chr4 115874375 115874476 -39755644 - PB1D10 SINE Alu -7 110 5 9 1469 1178 58 0 0 chr4 115874766 115874904 -39755216 + B1_Mus1 SINE Alu 1 138 -10 9 1469 216 0 0 0 chr4 115874904 115874928 -39755192 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1469 219 36 0 0 chr4 115875048 115875076 -39755044 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1469 874 107 76 0 chr4 115875378 115875509 -39754611 + B1_Mus1 SINE Alu 8 148 0 9 1469 319 338 113 10 chr4 115875514 115875717 -39754403 + MLT1K LTR MaLR 162 385 -210 9 1469 225 0 0 0 chr4 115875763 115875788 -39754332 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1469 1034 100 14 0 chr4 115875788 115875928 -39754192 - B1_Mur4 SINE Alu -8 142 1 9 1469 1407 233 90 0 chr4 115875954 115876297 -39753823 - MTD LTR MaLR 0 419 46 9 1469 258 290 0 0 chr4 115876588 115876657 -39753463 - ID4_ SINE ID -14 69 1 9 1469 601 111 20 10 chr4 115876928 115877028 -39753092 - B1_Mus2 SINE Alu 0 147 47 9 1469 229 284 0 86 chr4 115876959 115877040 -39753080 - RLTR25B LTR ERVK -516 512 439 9 1469 26 0 0 0 chr4 115877871 115877897 -39752223 + AT_rich Low_complexity Low_complexity 1 26 0 9 1469 411 382 98 30 chr4 115877906 115878141 -39751979 + MER115 DNA Tip100 12 262 -431 9 1469 414 155 0 0 chr4 115878141 115878238 -39751882 + CT-rich Low_complexity Low_complexity 2 98 0 9 1469 1047 123 0 7 chr4 115878239 115878386 -39751734 - B1_Mur4 SINE Alu -4 146 1 9 1469 694 270 68 44 chr4 115878515 115878763 -39751357 + MER115 DNA Tip100 428 681 -12 9 1469 348 310 104 44 chr4 115878813 115878948 -39751172 - MLT1A1 LTR MaLR -13 395 253 9 1469 225 282 73 115 chr4 115879103 115879199 -39750921 - RMER15 LTR ERVL -125 450 359 9 1469 1495 249 55 18 chr4 115879260 115879645 -39750475 - Lx8 LINE L1 -260 7213 6815 9 1469 1013 58 87 7 chr4 115879737 115879875 -39750245 + B1_Mur4 SINE Alu 1 149 -1 9 1469 226 76 43 43 chr4 115879876 115879945 -39750175 + A-rich Low_complexity Low_complexity 4 72 0 9 1469 243 175 82 66 chr4 115880114 115880175 -39749945 - MLT1A1 LTR MaLR -315 93 32 9 1469 21 0 0 0 chr4 115880386 115880407 -39749713 + AT_rich Low_complexity Low_complexity 1 21 0 9 1469 236 277 301 0 chr4 115880418 115880501 -39749619 + PB1D9 SINE Alu 5 112 -8 9 1469 506 278 17 9 chr4 115880516 115880632 -39749488 - B3 SINE B2 0 216 100 9 1469 312 217 0 0 chr4 115880651 115880711 -39749409 - L1M2 LINE L1 -546 5751 5692 9 1469 396 0 0 0 chr4 115880821 115880865 -39749255 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 9 1469 296 279 16 0 chr4 115880875 115880936 -39749184 - ID4_ SINE ID -13 70 9 9 1469 3225 128 102 18 chr4 115880937 115881534 -39748586 - RMER6A LTR ERVK 0 756 110 9 1469 490 200 39 20 chr4 115881608 115881710 -39748410 - B1_Mur1 SINE Alu -5 144 41 9 1469 391 258 11 0 chr4 115881717 115881810 -39748310 - ID_B1 SINE B4 -1 223 130 9 1469 229 310 66 41 chr4 115881719 115881840 -39748280 - PB1 SINE Alu -2 125 2 9 1469 305 250 148 0 chr4 115882299 115882387 -39747733 - PB1D9 SINE Alu -17 103 3 9 1469 333 302 0 79 chr4 115882453 115882579 -39747541 + PB1D7 SINE Alu 5 120 0 9 1469 1138 301 42 73 chr4 115882615 115883042 -39747078 - MLT1C LTR MaLR -1 466 53 9 1469 207 214 0 0 chr4 115883127 115883169 -39746951 + A-rich Low_complexity Low_complexity 1 42 0 9 1469 297 0 0 0 chr4 115883767 115883800 -39746320 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 1469 273 29 0 0 chr4 115883800 115883833 -39746287 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1469 210 245 20 0 chr4 115883869 115883918 -39746202 - B1F1 SINE Alu -25 124 75 9 1469 341 176 103 0 chr4 115883920 115883988 -39746132 - B4A SINE B4 -189 103 29 9 1469 712 103 8 8 chr4 115883992 115884109 -39746011 + (TTTCC)n Simple_repeat Simple_repeat 4 120 0 9 1469 495 0 0 0 chr4 115884113 115884168 -39745952 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 1469 419 287 37 56 chr4 115884169 115884190 -39745930 - ID_B1 SINE B4 -46 246 164 9 1469 784 136 44 22 chr4 115884190 115884325 -39745795 - B1_Mus2 SINE Alu -1 146 9 9 1469 419 287 37 56 chr4 115884325 115884346 -39745774 - ID_B1 SINE B4 -46 163 70 9 1469 234 329 73 0 chr4 115884560 115884642 -39745478 + PB1D7 SINE Alu 6 93 -27 9 1469 330 308 48 0 chr4 115884611 115884622 -39745498 - B4 SINE B4 -102 190 86 9 1469 410 303 0 0 chr4 115884622 115884711 -39745409 - B1F1 SINE Alu -60 89 1 9 1469 792 139 16 0 chr4 115884784 115884913 -39745207 - B1_Mus1 SINE Alu 0 148 18 9 1469 587 216 226 6 chr4 115884992 115885169 -39744951 - B3 SINE B2 0 216 1 9 1469 225 0 0 0 chr4 115885265 115885290 -39744830 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1469 201 94 0 0 chr4 115885781 115885813 -39744307 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1469 861 182 0 0 chr4 115886005 115886153 -39743967 - B1_Mus1 SINE Alu 0 148 1 9 1469 1139 213 10 0 chr4 115886180 115886387 -39743733 - B3 SINE B2 -7 209 1 9 1469 955 92 53 0 chr4 115886638 115886769 -39743351 + B1_Mus2 SINE Alu 1 138 -9 9 1469 210 37 0 0 chr4 115886769 115886796 -39743324 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1469 728 319 11 6 chr4 115886823 115887006 -39743114 + ID_B1 SINE B4 1 184 -40 9 1469 2663 85 114 8 chr4 115887006 115887408 -39742712 - BGLII_A LTR ERVK 0 445 1 9 1469 781 158 32 0 chr4 115887445 115887603 -39742517 - MYSERV16_I-int LTR ERVK -79 2247 2085 9 1469 229 329 88 94 chr4 115887691 115887711 -39742409 - MT2B2 LTR ERVL -245 339 320 9 1469 1567 48 16 0 chr4 115887711 115887900 -39742220 - B2_Mm2 SINE B2 -1 194 3 9 1469 229 329 88 94 chr4 115887900 115887943 -39742177 - MT2B2 LTR ERVL -265 319 164 9 1469 453 187 44 53 chr4 115887943 115888056 -39742064 - B1_Mur2 SINE Alu -37 112 1 9 1469 809 216 141 0 chr4 115888076 115888261 -39741859 - B3 SINE B2 -5 211 1 9 1469 785 138 153 32 chr4 115888551 115888708 -39741412 + B2_Mm2 SINE B2 1 176 -19 9 1469 591 259 37 5 chr4 115888719 115888905 -39741215 + MIR SINE MIR 9 206 -62 1 1469 844 167 12 0 chr4 115890205 115890373 -39739747 + GA-rich Low_complexity Low_complexity 2 171 0 1 1469 252 345 40 40 chr4 115890442 115890566 -39739554 - AmnSINE1 SINE SINE -223 352 229 1 1469 422 36 0 18 chr4 115890566 115890623 -39739497 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 1 1469 986 49 0 0 chr4 115890623 115890746 -39739374 - B1_Mm SINE Alu 0 147 25 1 1469 241 381 81 23 chr4 115890730 115890902 -39739218 - AmnSINE1 SINE SINE -318 257 76 1 1469 1889 199 3 3 chr4 115890967 115891310 -39738810 - MTC LTR MaLR -8 413 71 1 1469 812 179 7 14 chr4 115891328 115891470 -39738650 - B1_Mus1 SINE Alu 0 148 8 1 1469 242 321 99 45 chr4 115891406 115891517 -39738603 - MTA_Mm LTR MaLR -235 161 45 1 1469 504 32 0 0 chr4 115892172 115892234 -39737886 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1469 784 182 6 86 chr4 115892252 115892414 -39737706 - B1_Mur3 SINE Alu 0 149 1 1 1469 1222 95 0 0 chr4 115892448 115892595 -39737525 + B1_Mus1 SINE Alu 1 147 -1 1 1469 199 50 75 0 chr4 115892598 115892638 -39737482 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1469 27 0 0 0 chr4 115895037 115895064 -39735056 + AT_rich Low_complexity Low_complexity 1 27 0 1 1469 450 0 0 0 chr4 115896804 115896854 -39733266 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1469 624 238 34 27 chr4 115896856 115897003 -39733117 - B1F SINE Alu -1 148 1 1 1469 1268 41 0 0 chr4 115897143 115897290 -39732830 - B1_Mus2 SINE Alu 0 147 1 1 1469 730 172 71 50 chr4 115897467 115897608 -39732512 - B1_Mur1 SINE Alu -3 146 3 1 1469 921 158 14 7 chr4 115897994 115898134 -39731986 + B1_Mur4 SINE Alu 2 142 -8 1 1469 504 0 0 0 chr4 115898246 115898302 -39731818 + (TTC)n Simple_repeat Simple_repeat 2 57 0 1 1469 691 144 173 16 chr4 115898937 115899064 -39731056 - B1_Mus1 SINE Alu -1 147 1 1 1469 495 0 0 0 chr4 115899222 115899277 -39730843 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1469 706 252 19 6 chr4 115899278 115899434 -39730686 - RSINE1 SINE B4 -4 161 4 1 1469 676 263 138 5 chr4 115899526 115899721 -39730399 + ID_B1 SINE B4 2 222 -2 1 1469 602 271 31 43 chr4 115899766 115899928 -39730192 + RSINE1 SINE B4 4 163 -2 1 1469 267 103 0 0 chr4 115899945 115899984 -39730136 + (TAAG)n Simple_repeat Simple_repeat 1 39 0 1 1469 660 194 62 35 chr4 115900003 115900147 -39729973 + B1_Mur2 SINE Alu 1 148 -1 1 1469 913 56 167 0 chr4 115900311 115900437 -39729683 + B1_Mus1 SINE Alu 1 147 -1 1 1469 217 276 296 11 chr4 115900542 115900630 -39729490 + PB1D10 SINE Alu 4 116 -1 1 1469 3559 33 5 0 chr4 115900641 115901034 -39729086 + MTA_Mm LTR MaLR 1 395 -1 1 1469 968 230 21 11 chr4 115901101 115901290 -39728830 - B3 SINE B2 -25 191 1 1 1469 447 301 38 19 chr4 115901481 115901640 -39728480 - RSINE1 SINE B4 0 165 4 1 1469 23 0 0 0 chr4 115901642 115901665 -39728455 + AT_rich Low_complexity Low_complexity 1 23 0 1 1469 330 233 15 0 chr4 115901710 115901785 -39728335 + ID SINE ID 4 79 -213 1 1469 1436 91 11 0 chr4 115901805 115901992 -39728128 - B2_Mm1t SINE B2 -3 190 2 1 1469 351 229 48 0 chr4 115901993 115902076 -39728044 - Charlie1b DNA MER1_type -7 516 430 1 1469 332 319 21 0 chr4 115902118 115902212 -39727908 - B1_Mur3 SINE Alu -44 105 10 1 1469 1260 110 124 48 chr4 115902223 115902433 -39727687 + URR1A DNA MER1_type 1 226 0 1 1469 685 252 7 0 chr4 115902496 115902639 -39727481 + ID_B1 SINE B4 81 224 0 1 1469 360 270 146 37 chr4 115902647 115902893 -39727227 - Charlie1b DNA MER1_type -145 378 106 1 1469 336 285 44 89 chr4 115902872 115903007 -39727113 + B4 SINE B4 70 198 -94 1 1469 618 200 17 0 chr4 115902909 115903029 -39727091 + B1_Mur1 SINE Alu 10 131 -18 1 1469 426 135 27 0 chr4 115903029 115903103 -39727017 + B1_Mur4 SINE Alu 75 150 0 1 1469 35 0 0 0 chr4 115903104 115903139 -39726981 + AT_rich Low_complexity Low_complexity 1 35 0 1 1469 735 147 0 8 chr4 115903161 115903278 -39726842 - MTB_Mm LTR MaLR -2 405 290 1 1469 455 260 29 94 chr4 115903313 115903385 -39726735 - B4 SINE B4 -133 159 99 1 1469 1164 35 14 28 chr4 115903385 115903530 -39726590 - B1_Mm SINE Alu 0 147 5 1 1469 455 260 29 94 chr4 115903530 115903627 -39726493 - B4 SINE B4 -194 98 1 1 1469 874 196 145 0 chr4 115903695 115903874 -39726246 - B3 SINE B2 -11 205 1 1 1469 733 189 33 53 chr4 115904132 115904283 -39725837 - B1_Mur3 SINE Alu -1 148 1 1 1469 360 231 165 0 chr4 115904411 115904502 -39725618 - RSINE1 SINE B4 -12 153 48 1 1469 603 278 13 40 chr4 115904549 115904699 -39725421 - B1_Mur1 SINE Alu -1 148 3 1 1469 302 331 152 12 chr4 115904964 115905129 -39724991 - MLT1L LTR MaLR -234 376 189 1 1469 949 35 0 0 chr4 115905321 115905437 -39724683 - B1_Mus1 SINE Alu 0 148 33 1 1469 533 227 41 0 chr4 115905663 115905760 -39724360 + RSINE1 SINE B4 4 104 -61 1 1469 659 248 6 53 chr4 115905821 115905991 -39724129 + RSINE1 SINE B4 2 163 -2 1 1469 227 222 0 143 chr4 115906070 115906133 -39723987 + B1F SINE Alu 6 59 -90 1 1469 438 222 294 0 chr4 115906333 115906459 -39723661 - RSINE1 SINE B4 0 165 3 1 1469 251 326 82 22 chr4 115906642 115906777 -39723343 + MIR SINE MIR 5 147 -115 1 1469 383 266 138 0 chr4 115906777 115906886 -39723234 + B4 SINE B4 1 124 -168 1 1469 195 129 0 0 chr4 115906975 115907006 -39723114 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1469 548 252 121 7 chr4 115907065 115907205 -39722915 - B4A SINE B4 -86 206 51 1 1469 247 262 329 32 chr4 115907270 115907613 -39722507 - L2a LINE L2 -38 3388 2944 1 1469 407 300 133 63 chr4 115907619 115907889 -39722231 + B4 SINE B4 4 292 0 1 1469 500 208 136 59 chr4 115907936 115908105 -39722015 + B3A SINE B2 1 182 -16 1 1469 839 182 28 7 chr4 115908120 115908264 -39721856 - B1_Mur3 SINE Alu 0 149 3 1 1469 915 203 7 0 chr4 115908301 115908449 -39721671 + B1_Mur4 SINE Alu 2 150 0 1 1469 220 204 23 0 chr4 115908450 115908494 -39721626 + GA-rich Low_complexity Low_complexity 4 48 0 1 1469 525 302 72 26 chr4 115908610 115908763 -39721357 + RSINE1 SINE B4 4 163 -2 1 1469 620 225 311 6 chr4 115909187 115909348 -39720772 + B3 SINE B2 1 210 -6 1 1469 1731 31 0 0 chr4 115909368 115909559 -39720561 - B2_Mm1a SINE B2 -1 192 2 1 1469 23 68 0 0 chr4 115909670 115909714 -39720406 + AT_rich Low_complexity Low_complexity 1 44 0 1 1469 302 164 55 0 chr4 115909877 115909932 -39720188 + B1F SINE Alu 85 142 -7 1 1469 216 0 0 0 chr4 115909935 115909959 -39720161 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1469 990 48 6 176 chr4 115910142 115910318 -39719802 - B1_Mus2 SINE Alu 0 147 2 1 1469 914 90 8 0 chr4 115910419 115910553 -39719567 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 1 1469 656 197 115 0 chr4 115910554 115910676 -39719444 - B1_Mur2 SINE Alu -12 137 2 1 1469 339 291 13 0 chr4 115911103 115911182 -39718938 + RSINE1 SINE B4 3 82 -83 1 1469 702 47 0 0 chr4 115911509 115911595 -39718525 + BC1_Mm scRNA scRNA 1 86 -66 1 1469 341 164 0 15 chr4 115911598 115911666 -39718454 - MER53 DNA hAT -126 67 1 1 1469 327 274 14 0 chr4 115912098 115912171 -39717949 - MER5A DNA MER1_type -26 163 90 1 1469 10410 75 25 2 chr4 115912222 115913705 -39716415 - Lx3_Mus LINE L1 0 7009 5497 1 1469 294 98 0 0 chr4 115913851 115913902 -39716218 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1469 279 294 202 30 chr4 115914548 115914751 -39715369 - L2a LINE L2 -64 3362 3125 1 1469 399 297 143 28 chr4 115914753 115915032 -39715088 - L1ME3B LINE L1 -15 6225 5903 1 1469 1151 96 14 0 chr4 115915032 115915178 -39714942 - B1_Mus1 SINE Alu 0 148 1 1 1469 399 297 143 28 chr4 115915178 115915290 -39714830 - L1ME3B LINE L1 -338 5902 5789 1 1469 722 165 71 0 chr4 115915307 115915434 -39714686 - B1_Mur1 SINE Alu -5 144 9 1 1469 255 31 0 0 chr4 115915442 115915474 -39714646 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1469 1228 44 0 0 chr4 115915474 115915609 -39714511 - B1_Mm SINE Alu -12 135 1 1 1469 858 191 0 13 chr4 115915832 115915981 -39714139 + B1_Mus2 SINE Alu 1 147 0 1 1469 664 247 124 0 chr4 115916567 115916745 -39713375 - ID_B1 SINE B4 -23 201 2 1 1469 863 289 84 18 chr4 115917030 115917305 -39712815 + Tigger7 DNA MER2_type 14 306 -2185 1 1469 1075 258 84 32 chr4 115917304 115917649 -39712471 + Tigger7 DNA MER2_type 2129 2491 0 1 1469 631 190 0 24 chr4 115917836 115917960 -39712160 + B1_Mur4 SINE Alu 30 150 0 1 1469 207 69 0 0 chr4 115917964 115917993 -39712127 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1469 582 54 0 0 chr4 115918030 115918104 -39712016 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1469 285 220 0 63 chr4 115918231 115918294 -39711826 - ID4_ SINE ID -23 60 2 1 1469 2639 63 86 9 chr4 115918306 115918644 -39711476 - L1Md_F2 LINE L1 -14 6568 6205 1 1469 1228 105 55 0 chr4 115918646 115918827 -39711293 - B2_Mm1t SINE B2 -2 191 1 1 1469 257 236 70 31 chr4 115918852 115918947 -39711173 - PB1D9 SINE Alu 0 120 23 1 1469 294 196 0 0 chr4 115918948 115919019 -39711101 - L1MA7 LINE L1 -345 5946 5876 1 1469 890 187 0 0 chr4 115919045 115919179 -39710941 - B1_Mur4 SINE Alu -15 135 2 1 1469 583 224 223 54 chr4 115919218 115919402 -39710718 - B3 SINE B2 0 216 2 1 1469 204 97 0 0 chr4 115919433 115919464 -39710656 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1469 262 278 83 0 chr4 115919482 115919554 -39710566 - B3A SINE B2 -114 84 7 1 1469 769 213 7 0 chr4 115919571 115919707 -39710413 - B1_Mur2 SINE Alu -9 140 4 1 1469 1033 124 20 7 chr4 115919823 115919969 -39710151 + B1_Mus1 SINE Alu 1 148 0 1 1469 216 0 0 0 chr4 115919969 115919993 -39710127 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1469 483 236 118 0 chr4 115920162 115920289 -39709831 - B3 SINE B2 0 216 75 1 1469 232 250 110 24 chr4 115920315 115920397 -39709723 - ID SINE ID -135 89 1 1 1469 235 250 27 93 chr4 115920325 115920400 -39709720 - ID4 SINE ID -9 74 5 1 1469 799 184 7 26 chr4 115920410 115920561 -39709559 - B1_Mur4 SINE Alu -1 149 2 1 1469 522 0 0 0 chr4 115921365 115921423 -39708697 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1469 319 286 65 0 chr4 115921431 115921508 -39708612 + ID4_ SINE ID 2 83 0 1 1469 1284 48 0 0 chr4 115921761 115921908 -39708212 + B1_Mus2 SINE Alu 1 147 0 1 1469 300 262 155 0 chr4 115924672 115924756 -39705364 - PB1D10 SINE Alu -20 97 1 1 1469 25 31 0 0 chr4 115924821 115924853 -39705267 + AT_rich Low_complexity Low_complexity 1 32 0 1 1469 513 129 0 0 chr4 115925138 115925231 -39704889 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1469 288 206 147 0 chr4 115925253 115925321 -39704799 - B4 SINE B4 -210 82 5 1 1469 2312 264 162 120 chr4 115925465 115926247 -39703873 + Tigger1 DNA MER2_type 466 1391 -1027 1 1469 2053 114 65 19 chr4 115926247 115926570 -39703550 - Lx LINE L1 -6 6648 6311 1 1469 2312 264 162 120 chr4 115926570 115926624 -39703496 + Tigger1 DNA MER2_type 1392 1438 -980 1 1469 291 28 0 0 chr4 115926624 115926660 -39703460 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1469 243 0 0 0 chr4 115926660 115926686 -39703434 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1469 2312 264 162 120 chr4 115926686 115926910 -39703210 + Tigger1 DNA MER2_type 1439 1582 -836 1 1469 476 287 9 0 chr4 115926910 115927018 -39703102 + PB1D10 SINE Alu 3 111 -6 1 1469 2312 264 162 120 chr4 115927018 115927828 -39702292 + Tigger1 DNA MER2_type 1583 2415 -3 1 1469 315 256 172 110 chr4 115927970 115928209 -39701911 - MTD LTR MaLR -38 381 154 1 1469 350 235 15 0 chr4 115928330 115928398 -39701722 + B1_Mur2 SINE Alu 74 142 -7 1 1469 1239 75 0 0 chr4 115928935 115929082 -39701038 - B1_Mus1 SINE Alu -1 147 1 1 1469 595 254 14 14 chr4 115929201 115929341 -39700779 + RSINE1 SINE B4 2 141 -24 1 1469 528 16 0 0 chr4 115929348 115929409 -39700711 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1469 458 274 47 39 chr4 115929440 115929569 -39700551 + B3 SINE B2 80 209 -7 1 1469 850 122 8 0 chr4 115930152 115930283 -39699837 - B1_Mur3 SINE Alu 0 149 18 1 1469 444 247 40 33 chr4 115930283 115930303 -39699817 - ID_B1 SINE B4 0 224 73 1 1469 276 149 191 0 chr4 115930319 115930413 -39699707 - Lx9 LINE L1 -1 7643 7532 1 1469 1233 68 0 0 chr4 115930599 115930746 -39699374 - B1_Mus2 SINE Alu 0 147 1 1 1469 423 274 65 22 chr4 115930746 115930883 -39699237 - B1F2 SINE Alu -1 148 5 1 1469 1271 259 73 45 chr4 115931051 115931560 -39698560 - L1MB3 LINE L1 -67 6116 5594 1 1469 25 83 0 0 chr4 115932307 115932367 -39697753 + AT_rich Low_complexity Low_complexity 1 60 0 1 1469 30 45 0 0 chr4 115932435 115932479 -39697641 + AT_rich Low_complexity Low_complexity 1 44 0 1 1469 309 134 11 53 chr4 115932837 115932904 -39697216 - B2_Mm2 SINE B2 -102 114 47 1 1469 1191 102 6 0 chr4 115932989 115933155 -39696965 - B2_Mm1t SINE B2 -26 167 1 1 1469 703 258 19 32 chr4 115933194 115933350 -39696770 + B3A SINE B2 3 156 -42 1 1469 26 0 0 0 chr4 115933350 115933376 -39696744 + AT_rich Low_complexity Low_complexity 1 26 0 1 1469 460 210 29 39 chr4 115933523 115933627 -39696493 - B1_Mur1 SINE Alu -25 124 22 1 1469 520 302 12 12 chr4 115933645 115933806 -39696314 - RSINE1 SINE B4 -3 162 2 1 1469 963 143 14 0 chr4 115933813 115933953 -39696167 - B1_Mus2 SINE Alu -5 142 1 1 1469 485 309 44 0 chr4 115934077 115934213 -39695907 + RSINE1 SINE B4 4 145 -20 1 1469 1077 31 0 0 chr4 115934216 115934345 -39695775 + (CA)n Simple_repeat Simple_repeat 2 130 0 1 1469 730 215 146 57 chr4 115934475 115934667 -39695453 + B3 SINE B2 3 211 -5 1 1469 486 254 110 55 chr4 115934897 115934973 -39695147 - B4 SINE B4 -2 290 111 1 1469 652 186 18 0 chr4 115934973 115935086 -39695034 - B1_Mur1 SINE Alu -34 115 1 1 1469 486 254 110 55 chr4 115935086 115935097 -39695023 - B4 SINE B4 -2 110 80 1 1469 580 233 85 58 chr4 115935113 115935192 -39694928 - L1MB3 LINE L1 -214 5969 5880 1 1469 1411 78 39 0 chr4 115935192 115935371 -39694749 - B2_Mm2 SINE B2 -9 186 1 1 1469 580 233 85 58 chr4 115935371 115935514 -39694606 - L1MB3 LINE L1 -304 5879 5741 1 1469 242 279 81 11 chr4 115935853 115935940 -39694180 + PB1D10 SINE Alu 23 115 -2 1 1469 1054 204 58 0 chr4 115935956 115936147 -39693973 + B3 SINE B2 5 206 -10 1 1469 321 254 0 15 chr4 115936160 115936228 -39693892 + ID4_ SINE ID 3 69 -14 1 1469 708 268 119 15 chr4 115936674 115936875 -39693245 + ID_B1 SINE B4 3 224 0 1 1469 209 167 18 18 chr4 115937339 115937394 -39692726 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 1469 180 353 38 29 chr4 115937396 115937501 -39692619 - L2 LINE L2 -493 2926 2821 1 1469 961 161 207 0 chr4 115937715 115937889 -39692231 - B3 SINE B2 -3 213 4 1 1469 431 201 308 45 chr4 115937898 115938025 -39692095 - B3A SINE B2 0 198 29 1 1469 902 184 0 20 chr4 115938025 115938175 -39691945 - B1_Mus1 SINE Alu 0 148 2 1 1469 431 201 308 45 chr4 115938175 115938203 -39691917 - B3A SINE B2 -170 28 2 1 1469 192 135 0 0 chr4 115938272 115938309 -39691811 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1469 1250 109 55 0 chr4 115938345 115938528 -39691592 + B2_Mm2 SINE B2 2 194 -1 1 1469 739 49 10 10 chr4 115938672 115938776 -39691344 + B2_Mm2 SINE B2 92 195 0 1 1469 429 262 39 16 chr4 115938802 115938930 -39691190 - RSINE1 SINE B4 -33 132 2 1 1469 1020 119 28 0 chr4 115938961 115939104 -39691016 - B1_Mus2 SINE Alu 0 147 1 1 1469 483 274 149 0 chr4 115939138 115939313 -39690807 + ID_B1 SINE B4 16 216 -8 1 1469 375 253 77 44 chr4 115939432 115939523 -39690597 + RSINE1 SINE B4 2 95 -70 1 1469 249 137 137 0 chr4 115939567 115939578 -39690542 + B4A SINE B4 83 140 -152 1 1469 339 188 92 23 chr4 115939578 115939618 -39690502 + B1_Mm SINE Alu 12 55 -92 1 1469 276 30 0 0 chr4 115939618 115939651 -39690469 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1469 339 188 92 23 chr4 115939651 115939697 -39690423 + B1_Mm SINE Alu 56 103 -44 1 1469 497 240 98 27 chr4 115939748 115939790 -39690330 - ID_B1 SINE B4 -51 241 90 1 1469 683 164 0 0 chr4 115939790 115939894 -39690226 - B1_Mur1 SINE Alu -37 112 9 1 1469 535 299 51 0 chr4 115939937 115940074 -39690046 - RSINE1 SINE B4 -6 159 16 1 1469 327 271 14 0 chr4 115940103 115940173 -39689947 + PB1D7 SINE Alu 43 113 -7 1 1469 839 253 41 107 chr4 115940537 115940781 -39689339 - RLTR18B LTR ERVK -29 483 266 1 1469 1179 36 58 0 chr4 115940781 115940920 -39689200 - B1_Mm SINE Alu 0 147 1 1 1469 839 253 40 102 chr4 115940920 115941005 -39689115 - RLTR18B LTR ERVK -339 277 186 1 1469 479 265 16 144 chr4 115941042 115941204 -39688916 - RLTR18 LTR ERVK -307 309 171 1 1469 876 139 136 24 chr4 115941204 115941373 -39688747 + B2_Mm2 SINE B2 1 188 -7 1 1469 479 265 16 144 chr4 115941373 115941404 -39688716 - RLTR18 LTR ERVK -446 170 141 1 1469 2018 143 35 50 chr4 115941400 115941776 -39688344 - ORR1C1 LTR MaLR -8 370 1 1 1469 462 213 228 8 chr4 115941776 115941896 -39688224 - RLTR18 LTR ERVK -365 147 1 1 1469 225 0 0 0 chr4 115941964 115941989 -39688131 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1469 233 218 0 35 chr4 115942342 115942399 -39687721 + T-rich Low_complexity Low_complexity 5 59 0 1 1469 26 30 0 0 chr4 115942676 115942709 -39687411 + AT_rich Low_complexity Low_complexity 1 33 0 1 1469 700 174 96 22 chr4 115942792 115942927 -39687193 - B1_Mur2 SINE Alu 0 149 5 1 1469 206 109 61 61 chr4 115942984 115943033 -39687087 + A-rich Low_complexity Low_complexity 2 50 0 1 1469 522 216 48 0 chr4 115943039 115943168 -39686952 + B1_Mur3 SINE Alu 3 149 0 1 1469 245 259 0 0 chr4 115943168 115943226 -39686894 + A-rich Low_complexity Low_complexity 1 58 0 1 1469 596 167 137 0 chr4 115943660 115943764 -39686356 + PB1D9 SINE Alu 3 120 0 1 1469 550 262 14 0 chr4 115943822 115943966 -39686154 - ID_B1 SINE B4 -1 223 82 1 1469 666 238 179 21 chr4 115943975 115944215 -39685905 - B4 SINE B4 -13 279 2 1 1469 702 260 10 40 chr4 115944236 115944436 -39685684 - B3A SINE B2 -4 194 1 1 1469 1280 168 5 23 chr4 115944474 115944693 -39685427 - B3 SINE B2 -1 215 1 1 1469 554 75 12 0 chr4 115944695 115944775 -39685345 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 1 1469 729 0 0 0 chr4 115944775 115944856 -39685264 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 1 1469 1169 50 7 0 chr4 115944860 115945001 -39685119 - B1_Mus1 SINE Alu -6 142 1 1 1469 489 191 82 0 chr4 115945077 115945187 -39684933 + PB1D9 SINE Alu 2 120 0 1 1469 852 263 9 31 chr4 115945601 115945825 -39684295 + ID_B1 SINE B4 1 219 -5 1 1469 853 122 15 44 chr4 115946041 115946178 -39683942 - B1_Mur3 SINE Alu -16 133 1 1 1469 26 0 0 0 chr4 115946206 115946232 -39683888 + AT_rich Low_complexity Low_complexity 1 26 0 1 1469 236 176 20 0 chr4 115946246 115946297 -39683823 - B3A SINE B2 -144 54 3 1 1469 279 211 70 0 chr4 115946379 115946450 -39683670 - L1M3 LINE L1 -2907 3239 3164 1 1469 1168 236 117 24 chr4 115946849 115947226 -39682894 - MTD LTR MaLR -7 412 1 1 1469 305 209 0 0 chr4 115947285 115947352 -39682768 - B1_Mus2 SINE Alu 0 147 81 1 1469 8455 35 0 18 chr4 115947366 115947525 -39682595 - L1Md_F2 LINE L1 0 6582 6440 1 1469 1619 42 16 0 chr4 115947525 115947715 -39682405 + B2_Mm1a SINE B2 1 193 0 1 1469 18394 47 0 6 chr4 115947715 115950507 -39679613 - L1Md_F2 LINE L1 -143 6439 3650 1 1469 18524 68 2 0 chr4 115950511 115952994 -39677126 + L1VL1 LINE L1 1148 3634 -2249 1 1469 343 308 34 113 chr4 115952993 115953158 -39676962 - L1M3 LINE L1 -3105 3038 2898 1 1469 450 216 38 53 chr4 115953158 115953290 -39676830 - B1_Mur1 SINE Alu -18 131 2 1 1469 381 297 38 7 chr4 115953290 115953454 -39676666 - L1M3 LINE L1 -3232 2914 2745 1 1469 253 217 0 0 chr4 115953454 115953500 -39676620 + B3A SINE B2 1 46 -152 1 1469 599 151 164 16 chr4 115953503 115953631 -39676489 - B1_Mur3 SINE Alu 0 149 3 1 1469 732 250 52 26 chr4 115953631 115953817 -39676303 + B3 SINE B2 26 216 0 1 1469 583 61 24 0 chr4 115953819 115953901 -39676219 + B1_Mm SINE Alu 45 128 -19 1 1469 324 0 0 0 chr4 115953903 115953939 -39676181 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1469 245 268 15 102 chr4 115953962 115954099 -39676021 - L1M3 LINE L1 -3388 2752 2628 1 1469 511 252 88 37 chr4 115954176 115954312 -39675808 - B1_Mur1 SINE Alu -2 147 5 1 1469 1453 70 0 26 chr4 115954376 115954567 -39675553 - B2_Mm2 SINE B2 -8 187 2 1 1469 1138 252 26 4 chr4 115954953 115955417 -39674703 - Lx5 LINE L1 -800 6896 6202 1 1469 1027 199 181 4 chr4 115955419 115955646 -39674474 + Lx6 LINE L1 6990 7256 -204 1 1469 1208 103 172 4 chr4 115955649 115955882 -39674238 + RLTR15 LTR ERVK 1 272 -87 1 1469 454 191 0 21 chr4 115955858 115955954 -39674166 - RLTR12A LTR ERVK -474 94 1 1 1469 460 246 46 31 chr4 115955960 115956090 -39674030 + Lx6 LINE L1 7261 7392 -68 1 1469 2449 134 15 20 chr4 115956269 115956665 -39673455 + ORR1B1 LTR MaLR 1 394 0 1 1469 365 156 0 0 chr4 115956810 115956874 -39673246 - RLTR19C LTR ERVK -410 96 33 1 1469 318 83 0 20 chr4 115957022 115957071 -39673049 + RMER2 LTR ERV1 1 48 -519 1 1469 948 68 12 0 chr4 115957128 115957274 -39672846 - B2_Mm2 SINE B2 -58 158 1 1 1469 377 247 47 0 chr4 115957278 115957363 -39672757 - B4 SINE B4 -199 93 5 1 1469 238 350 2 97 chr4 115957543 115957646 -39672474 - B1F2 SINE Alu -53 96 1 1 1469 248 373 0 0 chr4 115957574 115957649 -39672471 - ID_B1 SINE B4 -71 153 79 1 1469 857 150 21 0 chr4 115957669 115957809 -39672311 - B1_Mus1 SINE Alu -5 143 1 1 1469 300 27 0 0 chr4 115957857 115957894 -39672226 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1469 560 277 8 0 chr4 115957900 115958030 -39672090 - RSINE1 SINE B4 -31 134 4 1 1469 288 289 13 0 chr4 115958266 115958342 -39671778 + ID_B1 SINE B4 84 160 -64 1 1469 398 311 16 16 chr4 115959195 115959319 -39670801 + PB1 SINE Alu 1 124 -3 1 1469 1144 184 48 0 chr4 115959853 115960059 -39670061 + B3 SINE B2 1 216 0 1 1469 225 0 0 0 chr4 115960163 115960188 -39669932 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1469 611 211 0 0 chr4 115960227 115960341 -39669779 + ID_B1 SINE B4 94 207 -17 1 1469 541 289 26 34 chr4 115960503 115960768 -39669352 - BGLII_B LTR ERVK -130 311 49 1 1469 1321 96 11 16 chr4 115960870 115961060 -39669060 + B2_Mm1a SINE B2 1 189 -4 1 1469 21 0 0 0 chr4 115961136 115961157 -39668963 + AT_rich Low_complexity Low_complexity 1 21 0 1 1469 276 300 0 12 chr4 115961400 115961481 -39668639 - MLT1A0 LTR MaLR -285 80 1 1 1469 304 314 11 11 chr4 115961546 115961633 -39668487 + ID_B1 SINE B4 87 173 -51 1 1469 431 277 30 0 chr4 115961679 115961780 -39668340 + RSINE1 SINE B4 11 114 -51 1 1469 369 0 0 0 chr4 115962065 115962106 -39668014 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1469 571 324 43 17 chr4 115962178 115962530 -39667590 - L1MB7 LINE L1 -13 6171 5811 1 1469 346 226 128 9 chr4 115962516 115962659 -39667461 - L1MB7 LINE L1 -485 5689 5528 1 1469 207 0 0 0 chr4 115962667 115962690 -39667430 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1469 1243 27 7 0 chr4 115962698 115962844 -39667276 - B1_Mus1 SINE Alu 0 148 2 1 1469 833 178 14 0 chr4 115962934 115963080 -39667040 - B1_Mur2 SINE Alu 0 149 2 1 1469 443 216 9 0 chr4 115963276 115963392 -39666728 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1469 697 138 76 42 chr4 115963456 115963600 -39666520 - B1_Mur4 SINE Alu 0 150 2 1 1469 278 111 0 0 chr4 115963600 115963639 -39666481 + PB1D9 SINE Alu 82 120 0 1 1469 1421 86 16 0 chr4 115963752 115963938 -39666182 - B2_Mm2 SINE B2 -6 189 1 1 1469 432 0 0 0 chr4 115964016 115964064 -39666056 + (GAGAA)n Simple_repeat Simple_repeat 2 49 0 1 1469 242 307 67 42 chr4 115964997 115965116 -39665004 + MIRc SINE MIR 42 163 -105 1 1469 340 264 149 0 chr4 115965429 115965550 -39664570 + RSINE1 SINE B4 2 140 -25 1 1469 253 231 15 0 chr4 115966042 115966107 -39664013 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1 1469 7905 174 39 66 chr4 115966268 115968821 -39661299 + Lx7 LINE L1 4239 6753 -943 1 1469 1218 54 0 0 chr4 115968821 115968968 -39661152 + B1_Mus2 SINE Alu 1 147 0 1 1469 5096 212 40 53 chr4 115968968 115969066 -39661054 + Lx7 LINE L1 6754 6843 -853 1 1469 679 173 24 0 chr4 115969131 115969258 -39660862 + B1_Mus1 SINE Alu 18 147 -1 1 1469 1807 241 179 22 chr4 115969309 115969852 -39660268 + Lx6 LINE L1 6833 7460 0 1 1469 269 265 102 0 chr4 115969847 115969945 -39660175 + L1M4 LINE L1 3728 3835 -2311 1 1469 651 60 0 0 chr4 115970021 115970105 -39660015 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 1 1469 1122 58 0 7 chr4 115970105 115970243 -39659877 - B1_Mm SINE Alu -9 138 2 1 1469 245 267 9 0 chr4 115970339 115970444 -39659676 + (TA)n Simple_repeat Simple_repeat 1 106 0 1 1469 333 312 102 0 chr4 115970463 115970591 -39659529 - ID_B1 SINE B4 -3 221 81 1 1469 1071 152 6 6 chr4 115971368 115971547 -39658573 - URR1B DNA MER1_type -41 184 6 1 1469 1496 64 16 0 chr4 115971684 115971872 -39658248 + B2_Mm2 SINE B2 2 192 -3 1 1469 239 227 15 0 chr4 115971895 115971961 -39658159 + L1M4 LINE L1 4618 4684 -1462 1 1469 207 0 0 0 chr4 115975805 115975828 -39654292 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1469 216 173 0 37 chr4 115976280 115976303 -39653817 + T-rich Low_complexity Low_complexity 31 52 0 1 1469 1019 44 88 15 chr4 115976303 115976440 -39653680 - B1_Mus1 SINE Alu -1 147 1 1 1469 216 173 0 37 chr4 115976440 115976470 -39653650 + T-rich Low_complexity Low_complexity 1 30 0 1 1469 720 217 68 9 chr4 115976494 115976676 -39653444 + B3 SINE B2 9 197 -19 1 1469 441 54 0 0 chr4 115976691 115976747 -39653373 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1469 608 227 174 15 chr4 115977082 115977283 -39652837 + ORR1D1 LTR MaLR 1 233 -141 1 1469 258 224 244 25 chr4 115977291 115977410 -39652710 - B1F2 SINE Alu -3 146 2 1 1469 183 293 0 0 chr4 115978899 115978940 -39651180 + MIR SINE MIR 32 72 -136 1 1469 334 295 200 7 chr4 115982655 115982696 -39647424 - B4A SINE B4 -19 273 95 1 1469 651 147 18 0 chr4 115982696 115982805 -39647315 - PB1D9 SINE Alu 0 120 10 1 1469 316 253 38 0 chr4 115987030 115987109 -39643011 + ID4 SINE ID 1 82 -1 1 1469 725 247 107 0 chr4 115989320 115989498 -39640622 - B3A SINE B2 0 198 2 1 1469 252 202 45 0 chr4 115990978 115991067 -39639053 + CT-rich Low_complexity Low_complexity 1 93 0 1 1469 212 289 0 71 chr4 115991067 115991123 -39638997 - ID4_ SINE ID -2 81 30 1 1469 1210 48 7 0 chr4 115991365 115991512 -39638608 - B1_Mus1 SINE Alu 0 148 1 1 1469 597 256 16 0 chr4 115991589 115991710 -39638410 + ID_B1 SINE B4 81 203 -21 1 1469 240 139 0 0 chr4 115992593 115992629 -39637491 - RMER1B Other Other -475 591 556 1 1469 674 261 77 0 chr4 115992634 115992841 -39637279 - B4A SINE B4 -69 223 1 1 1469 239 235 0 38 chr4 115992892 115992945 -39637175 - B1_Mus1 SINE Alu -95 53 3 1 1469 303 302 205 8 chr4 115993080 115993207 -39636913 - RSINE1 SINE B4 -12 153 2 1 1469 382 245 289 7 chr4 115993676 115993828 -39636292 - B3A SINE B2 0 198 4 1 1469 527 257 1 0 chr4 115993836 115993952 -39636168 - B3 SINE B2 -76 117 1 1 1469 1475 43 32 5 chr4 115993962 115994147 -39635973 - B2_Mm2 SINE B2 -5 190 1 1 1469 342 242 153 53 chr4 115994365 115994496 -39635624 - B1F2 SINE Alu -3 146 3 1 1469 22 35 0 0 chr4 115995933 115995962 -39634158 + AT_rich Low_complexity Low_complexity 1 29 0 1 1469 299 130 0 18 chr4 115995986 115996041 -39634079 - B2_Mm2 SINE B2 -94 101 48 1 1469 1341 89 11 0 chr4 115996071 115996251 -39633869 - B2_Mm1t SINE B2 -11 182 1 1 1469 212 360 27 48 chr4 115996589 115996713 -39633407 - MIRc SINE MIR -48 160 36 1 1469 180 0 0 0 chr4 115996812 115996832 -39633288 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 1 1469 893 262 64 105 chr4 115996948 115997405 -39632715 + MT2B LTR ERVL 1 542 -59 1 1469 1279 96 43 5 chr4 115997405 115997593 -39632527 + B2_Mm2 SINE B2 1 195 0 1 1469 893 259 52 115 chr4 115997593 115997661 -39632459 + MT2B LTR ERVL 543 595 -6 1 1469 220 205 126 103 chr4 115997760 115997847 -39632273 + PB1D7 SINE Alu 24 112 -8 1 1469 1284 27 0 0 chr4 115998431 115998578 -39631542 - B1_Mus2 SINE Alu 0 147 1 1 1470 748 258 16 27 chr4 116001262 116001449 -39628671 - B3A SINE B2 -13 185 1 1 1470 230 297 181 32 chr4 116001608 116001702 -39628418 + PB1D10 SINE Alu 1 108 -9 2 1470 369 62 0 0 chr4 116002473 116002521 -39627599 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1470 1800 156 98 6 chr4 116002634 116002970 -39627150 - ORR1B2 LTR MaLR 0 367 1 4 1470 436 0 82 12 chr4 116003084 116003169 -39626951 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1470 412 213 191 0 chr4 116003385 116003479 -39626641 + RSINE1 SINE B4 12 123 -42 6 1470 414 0 0 0 chr4 116003494 116003540 -39626580 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1470 595 234 14 14 chr4 116003738 116003877 -39626243 + B1F2 SINE Alu 1 139 -10 8 1470 492 237 52 0 chr4 116003913 116004010 -39626110 + RSINE1 SINE B4 4 105 -60 9 1470 645 296 0 7 chr4 116004526 116004662 -39625458 - RSINE1 SINE B4 -28 137 3 1 1470 669 252 7 0 chr4 116004738 116004885 -39625235 - B3 SINE B2 -67 149 2 1 1470 1193 176 18 13 chr4 116005392 116005616 -39624504 + URR1B DNA MER1_type 1 225 0 1 1470 1156 48 7 0 chr4 116006578 116006723 -39623397 - B1_Mm SINE Alu 0 147 2 1 1470 30 27 0 0 chr4 116007138 116007175 -39622945 + AT_rich Low_complexity Low_complexity 1 37 0 1 1470 1149 101 43 38 chr4 116007309 116007495 -39622625 + B2_Mm2 SINE B2 1 187 -8 1 1470 215 281 183 10 chr4 116007503 116007607 -39622513 + MIRm SINE MIR 155 276 0 1 1470 23 0 0 0 chr4 116007942 116007965 -39622155 + AT_rich Low_complexity Low_complexity 1 23 0 1 1470 690 240 125 0 chr4 116007973 116008165 -39621955 - ID_B1 SINE B4 -8 216 1 1 1470 788 156 15 23 chr4 116008225 116008356 -39621764 - B1_Mur4 SINE Alu -19 131 2 1 1470 232 214 0 45 chr4 116008836 116008880 -39621240 + B1F2 SINE Alu 24 65 -84 2 1470 2381 157 90 36 chr4 116008888 116009389 -39620731 + RLTR12B LTR ERVK 1 528 0 2 1470 226 163 306 0 chr4 116009393 116009442 -39620678 + B1_Mur2 SINE Alu 73 136 -13 2 1470 279 0 0 0 chr4 116009444 116009475 -39620645 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1470 642 126 233 8 chr4 116009863 116009983 -39620137 + B1_Mus2 SINE Alu 1 147 0 2 1470 337 281 12 15 chr4 116010742 116010839 -39619281 - PB1 SINE Alu -19 108 13 2 1470 276 216 205 19 chr4 116010845 116011001 -39619119 + L1MC4a LINE L1 6134 6318 -1467 2 1470 294 181 46 138 chr4 116011008 116011117 -39619003 + L1MC4a LINE L1 6715 6813 -972 2 1470 1167 74 0 13 chr4 116011117 116011267 -39618853 + B1_Mus1 SINE Alu 1 148 0 2 1470 299 215 146 69 chr4 116011286 116011521 -39618599 + L1MC4a LINE L1 6797 7059 -823 2 1470 397 274 147 28 chr4 116011536 116011754 -39618366 + L1M4 LINE L1 2602 2845 -3301 2 1470 672 137 34 22 chr4 116011767 116011917 -39618203 - B1_Mus2 SINE Alu 0 149 1 2 1470 195 42 0 0 chr4 116012004 116012028 -39618092 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1470 624 192 0 82 chr4 116012281 116012451 -39617669 + RMER10B LTR ERVL 190 345 -53 3 1470 413 277 35 18 chr4 116012818 116012932 -39617188 - MER21B LTR ERV1 -615 248 133 3 1470 307 273 64 0 chr4 116013502 116013612 -39616508 - L1MB7 LINE L1 -180 6004 5888 3 1470 242 188 13 80 chr4 116013618 116013693 -39616427 - L1M5 LINE L1 -836 5608 5539 3 1470 281 291 82 6 chr4 116013837 116013996 -39616124 - L1M5 LINE L1 -853 5293 5123 3 1470 321 283 36 54 chr4 116014005 116014173 -39615947 + RMER10B LTR ERVL 50 214 -184 3 1470 528 303 117 16 chr4 116014191 116014439 -39615681 - B4A SINE B4 -18 274 2 3 1470 186 343 14 14 chr4 116014558 116014629 -39615491 + L2 LINE L2 2478 2548 -871 3 1470 199 328 0 15 chr4 116014712 116014777 -39615343 + L2 LINE L2 2704 2767 -652 3 1470 294 290 169 68 chr4 116014883 116015031 -39615089 - B3A SINE B2 -35 163 1 3 1470 224 351 217 7 chr4 116015642 116015946 -39614174 + L2 LINE L2 464 831 -2588 3 1470 538 324 173 44 chr4 116016097 116016795 -39613325 + L2 LINE L2 1464 2251 -1168 3 1470 1063 64 0 54 chr4 116017253 116017402 -39612718 + B1_Mus2 SINE Alu 1 141 -6 4 1470 692 164 6 33 chr4 116017420 116017516 -39612604 + polypurine Low_complexity Low_complexity 1 95 0 4 1470 1015 58 0 44 chr4 116017516 116017697 -39612423 + (GAA)n Simple_repeat Simple_repeat 2 174 0 4 1470 692 164 6 33 chr4 116017697 116017783 -39612337 + polypurine Low_complexity Low_complexity 96 178 0 4 1470 513 313 166 36 chr4 116017794 116018009 -39612111 + L1MCa LINE L1 100 324 -6184 4 1470 845 269 9 9 chr4 116018009 116018219 -39611901 - B3 SINE B2 -4 212 3 4 1470 513 313 166 36 chr4 116018219 116018638 -39611482 + L1MCa LINE L1 325 829 -5679 4 1470 469 211 157 45 chr4 116018638 116018772 -39611348 + B1_Mur1 SINE Alu 1 149 0 4 1470 513 313 166 36 chr4 116018772 116019194 -39610926 + L1MCa LINE L1 830 1295 -5213 4 1470 746 179 30 46 chr4 116019211 116019403 -39610717 + B3 SINE B2 3 186 -9 4 1470 393 206 112 21 chr4 116019642 116019830 -39610290 + L1MCa LINE L1 1578 1782 -4726 4 1470 25 0 0 0 chr4 116019895 116019920 -39610200 + AT_rich Low_complexity Low_complexity 1 25 0 4 1470 699 225 143 46 chr4 116019920 116020116 -39610004 - B3 SINE B2 -1 215 1 4 1470 2199 255 145 28 chr4 116020123 116021008 -39609112 + L1MCa LINE L1 2613 3619 -2702 4 1470 1778 146 19 10 chr4 116021008 116021320 -39608800 + Lx LINE L1 6340 6654 0 5 1470 2199 255 145 28 chr4 116021320 116021691 -39608429 + L1MCa LINE L1 3620 4016 -2305 4 1470 527 272 184 8 chr4 116021713 116021969 -39608151 + L1MC1 LINE L1 6033 6333 0 5 1470 249 222 0 0 chr4 116022028 116022091 -39608029 + CT-rich Low_complexity Low_complexity 2 64 0 5 1470 558 0 0 0 chr4 116022093 116022155 -39607965 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1470 408 335 45 17 chr4 116022228 116022407 -39607713 + B3A SINE B2 13 196 -2 5 1470 1502 186 121 30 chr4 116022853 116023218 -39606902 + RMER10B LTR ERVL 1 398 0 5 1470 1180 49 7 0 chr4 116023377 116023521 -39606599 - B1_Mus2 SINE Alu -1 146 2 5 1470 387 0 0 0 chr4 116023558 116023601 -39606519 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1470 1384 176 14 84 chr4 116024371 116024656 -39605464 + RMER15 LTR ERVL 1 265 -310 5 1470 1225 205 157 48 chr4 116024757 116025070 -39605050 + RMER15 LTR ERVL 229 575 0 5 1470 198 236 0 0 chr4 116026932 116026987 -39603133 + GA-rich Low_complexity Low_complexity 1 55 0 5 1470 229 228 18 0 chr4 116027368 116027425 -39602695 + PB1D10 SINE Alu 43 100 -17 6 1470 584 306 34 17 chr4 116027430 116027606 -39602514 + B3A SINE B2 2 180 -18 6 1470 429 167 0 0 chr4 116027628 116027706 -39602414 + CT-rich Low_complexity Low_complexity 3 80 0 6 1470 468 0 0 0 chr4 116027706 116027758 -39602362 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1470 1146 100 14 0 chr4 116027808 116027977 -39602143 - B2_Mm1t SINE B2 -14 179 8 6 1470 1015 95 0 87 chr4 116027995 116028156 -39601964 + B1_Mus1 SINE Alu 2 148 0 6 1470 1277 77 58 27 chr4 116028275 116028435 -39601685 + B2_Mm2 SINE B2 1 155 -40 6 1470 351 0 0 0 chr4 116028435 116028474 -39601646 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1470 1277 77 58 27 chr4 116028474 116028501 -39601619 + B2_Mm2 SINE B2 156 192 -3 6 1470 516 231 0 0 chr4 116028722 116028852 -39601268 + GA-rich Low_complexity Low_complexity 2 131 0 6 1470 635 317 0 36 chr4 116028858 116029025 -39601095 + RSINE1 SINE B4 3 163 -2 6 1470 266 248 270 0 chr4 116029041 116029178 -39600942 + L2a LINE L2 3249 3422 -4 7 1470 525 264 121 0 chr4 116030785 116030925 -39599195 + B3A SINE B2 1 157 -41 7 1470 8049 78 3 1 chr4 116031016 116032127 -39597993 - L1_Mus3 LINE L1 -3 5880 4768 7 1470 5142 97 20 1 chr4 116032131 116032881 -39597239 + L1_Mus3 LINE L1 5870 6633 -5 7 1470 280 250 88 50 chr4 116033089 116033158 -39596962 + B1F2 SINE Alu 64 136 -13 7 1470 294 29 0 0 chr4 116033158 116033193 -39596927 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 7 1470 303 268 0 14 chr4 116033695 116033767 -39596353 + L1MC4 LINE L1 6471 6541 -1501 7 1470 383 349 82 58 chr4 116033883 116034127 -39595993 + L1MC4 LINE L1 6785 7026 -1016 7 1470 556 261 199 0 chr4 116034127 116034303 -39595817 + B3 SINE B2 1 211 -5 7 1470 383 349 82 58 chr4 116034303 116034508 -39595612 + L1MC4 LINE L1 7027 7245 -797 7 1470 545 0 15 0 chr4 116034513 116034578 -39595542 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 7 1470 223 250 0 118 chr4 116034585 116034653 -39595467 - ID4 SINE ID -9 74 15 7 1470 27 0 0 0 chr4 116034676 116034703 -39595417 + AT_rich Low_complexity Low_complexity 1 27 0 7 1470 523 325 19 19 chr4 116034767 116034921 -39595199 + RSINE1 SINE B4 6 159 -6 8 1470 206 139 0 44 chr4 116035083 116035128 -39594992 + CT-rich Low_complexity Low_complexity 3 45 0 8 1470 695 176 95 7 chr4 116035144 116035281 -39594839 - B1_Mur4 SINE Alu 0 150 2 8 1470 498 292 79 56 chr4 116035535 116035713 -39594407 - ID_B1 SINE B4 -5 219 38 8 1470 1784 152 61 31 chr4 116035716 116036076 -39594044 + ORR1D1 LTR MaLR 4 374 0 8 1470 593 230 0 0 chr4 116036220 116036320 -39593800 - B3 SINE B2 -116 100 1 8 1470 4329 151 16 14 chr4 116036759 116037497 -39592623 + Lx3C LINE L1 6234 6973 -3 8 1470 708 287 43 34 chr4 116038002 116038211 -39591909 - B3 SINE B2 0 216 6 8 1470 194 336 139 46 chr4 116039186 116039423 -39590697 + L2 LINE L2 2037 2295 -1124 8 1470 255 338 68 0 chr4 116039508 116039641 -39590479 + L2 LINE L2 2492 2633 -786 8 1470 550 290 21 28 chr4 116039657 116039799 -39590321 + B4A SINE B4 15 155 -137 8 1470 399 91 45 0 chr4 116039806 116039872 -39590248 + RMER1B Other Other 687 755 -311 9 1470 325 350 94 0 chr4 116039876 116039993 -39590127 + B4A SINE B4 165 292 0 8 1470 1130 240 54 0 chr4 116040106 116040385 -39589735 + RMER1B Other Other 66 359 -707 9 1470 1910 201 7 61 chr4 116040391 116040848 -39589272 + RMER1B Other Other 541 972 -94 9 1470 656 210 60 22 chr4 116040889 116041073 -39589047 - B3 SINE B2 0 195 1 9 1470 260 355 40 0 chr4 116042407 116042483 -39587637 + B1F1 SINE Alu 13 91 -58 9 1470 263 340 29 10 chr4 116042616 116042720 -39587400 - PB1D10 SINE Alu -10 107 2 9 1470 486 134 22 89 chr4 116042943 116043033 -39587087 + B1_Mur4 SINE Alu 62 145 -5 9 1470 21 57 0 0 chr4 116044250 116044285 -39585835 + AT_rich Low_complexity Low_complexity 1 35 0 9 1470 330 233 41 0 chr4 116044917 116044990 -39585130 + ID_B1 SINE B4 107 182 -42 9 1470 191 100 33 0 chr4 116045123 116045153 -39584967 + MIRc SINE MIR 124 154 -114 9 1470 3523 18 2 0 chr4 116045323 116045718 -39584402 - MTA_Mm LTR MaLR 0 396 1 9 1470 8491 44 23 5 chr4 116045720 116046796 -39583324 - MTA_Mm-int LTR MaLR -2 1096 1 9 1470 3505 20 2 0 chr4 116046796 116047191 -39582929 - MTA_Mm LTR MaLR 0 396 1 9 1470 1307 88 0 58 chr4 116047276 116047482 -39582638 - B2_Mm2 SINE B2 -1 194 1 1 1470 305 276 97 83 chr4 116047571 116047788 -39582332 + MER112 DNA MER1_type 42 261 0 1 1470 3603 53 7 0 chr4 116048334 116048785 -39581335 + Lx3_Mus LINE L1 6556 7009 0 1 1470 276 306 92 3 chr4 116049184 116049385 -39580735 + L1_Mur3 LINE L1 81 267 -7445 1 1470 22 0 0 0 chr4 116049506 116049528 -39580592 + AT_rich Low_complexity Low_complexity 1 22 0 1 1470 975 256 9 62 chr4 116049732 116049872 -39580248 - B3 SINE B2 -3 213 74 1 1470 842 190 159 0 chr4 116049872 116050067 -39580053 + URR1A DNA MER1_type 1 226 0 1 1470 975 256 9 62 chr4 116050067 116050151 -39579969 - B3 SINE B2 -143 73 1 1 1470 506 254 66 0 chr4 116050341 116050463 -39579657 - B1_Mur4 SINE Alu -20 130 1 1 1470 447 19 0 0 chr4 116051159 116051211 -39578909 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1470 3422 33 2 0 chr4 116051401 116051796 -39578324 + MTA_Mm LTR MaLR 1 396 0 1 1470 191 250 69 56 chr4 116051883 116051955 -39578165 + L3 LINE CR1 1997 2069 -2420 1 1470 618 264 50 12 chr4 116051994 116052155 -39577965 - B3A SINE B2 -16 182 16 1 1470 605 237 172 30 chr4 116052372 116052668 -39577452 + LTR37A LTR ERV1 15 352 -74 1 1470 237 179 0 0 chr4 116052876 116052915 -39577205 + B3 SINE B2 1 39 -177 1 1470 1067 196 54 0 chr4 116052916 116053140 -39576980 + Lx7 LINE L1 7119 7354 -342 1 1470 3527 128 23 56 chr4 116053150 116053796 -39576324 - Lx2B LINE L1 -4 6996 6372 1 1470 6405 123 22 61 chr4 116053797 116054764 -39575356 - L1_Mur1 LINE L1 -9 5877 4931 1 1470 1168 68 0 0 chr4 116054764 116054911 -39575209 - B1_Mus2 SINE Alu 0 147 1 1 1470 6405 123 22 61 chr4 116054911 116055162 -39574958 - L1_Mur1 LINE L1 -956 4930 4706 1 1470 1444 187 4 22 chr4 116055241 116055514 -39574606 + ORR1B2-int LTR MaLR 838 1105 -404 1 1470 1769 169 75 62 chr4 116055519 116055891 -39574229 - ORR1C1 LTR MaLR 0 378 2 1 1470 791 115 38 15 chr4 116055915 116056081 -39574039 - ORR1C1-int LTR MaLR -127 1453 1287 1 1470 402 152 63 0 chr4 116056040 116056119 -39574001 + ORR1B2 LTR MaLR 284 367 0 1 1470 755 194 101 28 chr4 116056119 116056405 -39573715 + Lx7 LINE L1 7387 7693 -3 1 1470 485 293 95 6 chr4 116056421 116056579 -39573541 + B3 SINE B2 32 203 -13 1 1470 346 315 138 37 chr4 116056604 116056792 -39573328 - B3 SINE B2 -6 210 4 1 1470 572 58 0 75 chr4 116057105 116057198 -39572922 + L1_Mus1 LINE L1 6481 6566 -1 1 1470 357 218 150 0 chr4 116057213 116057301 -39572819 + B1_Mur2 SINE Alu 42 144 -5 1 1470 466 117 0 49 chr4 116057304 116057385 -39572735 + B1_Mur3 SINE Alu 73 149 0 1 1470 366 340 52 0 chr4 116057546 116057643 -39572477 + B4A SINE B4 2 103 -189 1 1470 1137 51 0 0 chr4 116057751 116057889 -39572231 - B1_Mus2 SINE Alu -9 138 1 1 1470 7760 62 2 2 chr4 116058286 116059784 -39570336 - L1_Mus1 LINE L1 0 6567 5070 1 1470 1405 66 22 0 chr4 116059996 116060179 -39569941 + B2_Mm2 SINE B2 3 189 -6 1 1470 812 206 14 0 chr4 116060432 116060578 -39569542 + B1_Mur3 SINE Alu 2 149 0 1 1470 230 193 0 17 chr4 116060592 116060650 -39569470 + GA-rich Low_complexity Low_complexity 4 60 0 1 1470 263 358 92 0 chr4 116060736 116060845 -39569275 - PB1D9 SINE Alu -1 119 1 1 1470 608 310 19 0 chr4 116061037 116061195 -39568925 - RSINE1 SINE B4 -2 163 3 1 1470 462 231 300 0 chr4 116061460 116061620 -39568500 + B3 SINE B2 1 208 -8 1 1470 326 373 35 23 chr4 116061689 116061862 -39568258 - MIRc SINE MIR -72 196 22 1 1470 21 57 0 0 chr4 116062376 116062411 -39567709 + AT_rich Low_complexity Low_complexity 1 35 0 1 1470 502 309 93 13 chr4 116062609 116062760 -39567360 + RSINE1 SINE B4 3 165 0 1 1470 381 297 52 109 chr4 116063045 116063219 -39566901 - B4A SINE B4 -126 166 3 1 1470 355 232 75 50 chr4 116063928 116064056 -39566064 - B2_Mm2 SINE B2 -8 185 47 1 1470 236 170 43 0 chr4 116064020 116064067 -39566053 - B4 SINE B4 -210 82 34 1 1470 370 252 0 120 chr4 116064387 116064403 -39565717 + MT2B LTR ERVL 156 157 -444 1 1470 534 288 0 0 chr4 116064403 116064514 -39565606 + B1_Mus2 SINE Alu 3 113 -34 1 1470 1470 64 5 5 chr4 116064705 116064894 -39565226 + B2_Mm2 SINE B2 1 189 -6 1 1470 413 0 0 0 chr4 116065171 116065227 -39564893 + L1Md_A LINE L1 6527 6582 0 1 1470 678 100 0 43 chr4 116065442 116065557 -39564563 + B1_Mus1 SINE Alu 34 143 -5 1 1470 749 247 164 13 chr4 116065626 116065864 -39564256 + B4 SINE B4 1 274 -18 1 1470 468 235 47 7 chr4 116066094 116066244 -39563876 + Lx7 LINE L1 7210 7365 -331 1 1470 23 33 0 0 chr4 116066378 116066408 -39563712 + AT_rich Low_complexity Low_complexity 1 30 0 1 1470 234 254 48 0 chr4 116066438 116066501 -39563619 - ID4_ SINE ID -16 67 2 1 1470 275 309 126 9 chr4 116066524 116066635 -39563485 - B1F SINE Alu -16 133 10 1 1470 540 307 14 0 chr4 116066849 116066989 -39563131 + ID_B1 SINE B4 83 224 0 1 1470 271 407 0 0 chr4 116067330 116067438 -39562682 - PB1 SINE Alu -7 120 13 1 1470 242 222 154 56 chr4 116067471 116067633 -39562487 + L1M2 LINE L1 5128 5305 -838 1 1470 920 264 44 149 chr4 116067680 116068063 -39562057 + MTE2a LTR MaLR 3 345 -34 1 1470 257 198 33 12 chr4 116068102 116068184 -39561936 + L1M2 LINE L1 5345 5436 -738 1 1470 454 183 9 9 chr4 116068211 116068327 -39561793 + GA-rich Low_complexity Low_complexity 2 117 0 1 1470 542 273 55 0 chr4 116068427 116068555 -39561565 - RSINE1 SINE B4 -29 136 2 1 1470 748 243 119 0 chr4 116068598 116068783 -39561337 - B3 SINE B2 -6 210 4 1 1470 219 69 0 0 chr4 116068852 116068881 -39561239 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1470 240 266 30 61 chr4 116069330 116069462 -39560658 - L1ME2z LINE L1 -298 6146 6019 1 1470 272 280 98 25 chr4 116069805 116069973 -39560147 - L1ME2z LINE L1 -476 5688 5505 1 1470 334 263 0 29 chr4 116070054 116070156 -39559964 - L1ME2z LINE L1 -692 5472 5374 1 1470 274 270 48 0 chr4 116070163 116070226 -39559894 + B1F SINE Alu 47 112 -37 1 1470 1087 61 0 20 chr4 116070286 116070436 -39559684 + B1_Mm SINE Alu 1 147 0 1 1470 2610 98 29 0 chr4 116070438 116070817 -39559303 + Lx2 LINE L1 6256 6645 -352 1 1470 930 159 93 33 chr4 116070812 116071027 -39559093 + Lx2 LINE L1 6770 6997 0 1 1470 979 41 0 0 chr4 116071035 116071157 -39558963 + B1_Mus1 SINE Alu 27 148 0 1 1470 308 34 33 33 chr4 116071157 116071217 -39558903 + (CAAAAA)n Simple_repeat Simple_repeat 6 65 0 1 1470 248 288 100 17 chr4 116071570 116071690 -39558430 - L1MC LINE L1 -2060 4086 3957 1 1470 302 316 43 9 chr4 116071694 116071809 -39558311 - PB1D7 SINE Alu -1 119 1 1 1470 241 202 130 33 chr4 116072119 116072211 -39557909 + MLT1A1 LTR MaLR 34 134 -274 1 1470 46 45 0 0 chr4 116072211 116072278 -39557842 + AT_rich Low_complexity Low_complexity 1 67 0 1 1470 689 173 59 22 chr4 116072434 116072570 -39557550 - B1_Mus1 SINE Alu -3 145 5 1 1470 332 180 0 0 chr4 116072575 116072636 -39557484 + MLT1A1 LTR MaLR 340 400 -8 1 1470 215 265 0 0 chr4 116073262 116073311 -39556809 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1470 2742 235 71 53 chr4 116073416 116073546 -39556574 + Lx6 LINE L1 6638 6752 -708 1 1470 1235 77 53 0 chr4 116073546 116073716 -39556404 + B2_Mm2 SINE B2 3 181 -14 1 1470 2742 235 71 53 chr4 116073716 116074355 -39555765 + Lx6 LINE L1 6753 7421 -39 1 1470 768 163 16 8 chr4 116074653 116074777 -39555343 + B1_Mur4 SINE Alu 5 129 -21 1 1470 256 253 0 0 chr4 116075189 116075268 -39554852 + T-rich Low_complexity Low_complexity 1 79 0 1 1470 452 89 0 12 chr4 116075269 116075349 -39554771 + (TATG)n Simple_repeat Simple_repeat 2 80 0 1 1470 490 171 58 33 chr4 116075559 116075680 -39554440 - B1_Mur1 SINE Alu 0 149 26 1 1470 264 202 92 175 chr4 116075778 116075898 -39554222 - PB1D9 SINE Alu -1 119 10 1 1470 205 118 19 19 chr4 116076020 116076072 -39554048 + A-rich Low_complexity Low_complexity 3 54 0 1 1470 389 228 127 95 chr4 116076589 116076715 -39553405 + B3A SINE B2 2 131 -67 1 1470 198 0 0 0 chr4 116076735 116076757 -39553363 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1470 198 103 0 0 chr4 116076782 116076811 -39553309 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1470 25 0 0 0 chr4 116076908 116076933 -39553187 + AT_rich Low_complexity Low_complexity 1 25 0 1 1470 207 0 0 0 chr4 116077128 116077151 -39552969 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1470 608 190 0 33 chr4 116077665 116077785 -39552335 + PB1 SINE Alu 12 127 0 1 1470 1153 34 7 40 chr4 116079921 116080073 -39550047 - B1_Mus2 SINE Alu 0 147 1 1 1470 5915 14 0 0 chr4 116080160 116080825 -39549295 + L1Md_T LINE L1 5918 6582 0 1 1470 479 121 0 0 chr4 116080836 116080902 -39549218 + B1_Mus2 SINE Alu 1 66 -81 1 1470 198 0 0 0 chr4 116080902 116080924 -39549196 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1470 1493 35 0 0 chr4 116080930 116081104 -39549016 - B2_Mm1a SINE B2 -18 175 2 1 1470 465 286 39 8 chr4 116081344 116081471 -39548649 + B1_Mur1 SINE Alu 1 131 -18 1 1470 594 0 0 0 chr4 116081471 116081537 -39548583 + (GTTTG)n Simple_repeat Simple_repeat 2 67 0 1 1470 466 282 86 0 chr4 116081788 116081905 -39548215 - B3 SINE B2 -30 186 60 1 1470 1101 84 6 6 chr4 116081918 116082074 -39548046 + B2_Mm1t SINE B2 1 156 -37 1 1470 185 35 0 65 chr4 116082076 116082107 -39548013 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1470 21 36 0 0 chr4 116082183 116082211 -39547909 + AT_rich Low_complexity Low_complexity 1 28 0 1 1470 409 340 19 0 chr4 116082233 116082339 -39547781 - RSINE1 SINE B4 -52 113 6 1 1470 544 256 198 11 chr4 116082759 116082941 -39547179 - B3 SINE B2 0 216 1 1 1470 2636 182 55 0 chr4 116083209 116083698 -39546422 + RMER20A LTR ERVK 1 516 0 1 1470 1405 256 74 60 chr4 116083801 116084463 -39545657 + Lx9 LINE L1 6974 7644 0 1 1470 388 309 31 21 chr4 116084743 116084839 -39545281 + ID_B1 SINE B4 80 176 -48 1 1470 333 0 0 0 chr4 116084963 116085000 -39545120 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1 1470 657 234 24 0 chr4 116085086 116085210 -39544910 - B3 SINE B2 -87 129 3 2 1470 235 362 181 0 chr4 116085260 116085387 -39544733 + MER21B LTR ERV1 63 212 -651 2 1470 363 277 72 48 chr4 116085404 116085529 -39544591 + MER21B LTR ERV1 270 397 -466 2 1470 820 291 98 106 chr4 116085910 116086391 -39543729 + MER21B LTR ERV1 383 859 -4 2 1470 441 54 0 0 chr4 116086442 116086498 -39543622 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1470 1256 47 0 0 chr4 116086578 116086726 -39543394 + B1_Mus1 SINE Alu 1 148 0 2 1470 473 266 74 42 chr4 116086806 116087089 -39543031 + L1MD LINE L1 4754 5045 -1101 2 1470 262 388 0 0 chr4 116087098 116087183 -39542937 + RSINE1 SINE B4 81 165 0 2 1470 369 0 0 0 chr4 116087187 116087228 -39542892 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1470 216 67 0 0 chr4 116087228 116087257 -39542863 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1470 28 0 0 0 chr4 116087261 116087289 -39542831 + AT_rich Low_complexity Low_complexity 1 28 0 2 1470 276 333 80 36 chr4 116087356 116087468 -39542652 + PB1D10 SINE Alu 1 117 0 2 1470 1256 20 0 13 chr4 116087468 116087617 -39542503 + B1_Mm SINE Alu 1 147 0 2 1470 225 0 0 0 chr4 116087617 116087642 -39542478 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1470 772 178 13 40 chr4 116087759 116087911 -39542209 - B1_Mur1 SINE Alu 0 149 2 2 1470 383 226 197 6 chr4 116088282 116088441 -39541679 + ORR1D2 LTR MaLR 8 191 -168 2 1470 351 64 0 0 chr4 116088455 116088502 -39541618 + U2 snRNA snRNA 1 47 -141 2 1470 189 0 0 0 chr4 116088503 116088524 -39541596 + (TTCC)n Simple_repeat Simple_repeat 1 21 0 2 1470 828 201 0 0 chr4 116088524 116088663 -39541457 - B1_Mus2 SINE Alu -5 142 4 2 1470 292 256 25 25 chr4 116088663 116088739 -39541381 + ORR1D2 LTR MaLR 136 211 -163 2 1470 180 0 0 0 chr4 116088824 116088844 -39541276 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1470 617 315 62 0 chr4 116088844 116088990 -39541130 + RSINE1 SINE B4 11 165 0 2 1470 815 203 53 37 chr4 116089146 116089335 -39540785 - B3A SINE B2 -6 192 1 2 1470 227 118 39 0 chr4 116089343 116089394 -39540726 + L1MC4a LINE L1 7826 7878 -4 2 1470 435 303 8 62 chr4 116089669 116089799 -39540321 + RSINE1 SINE B4 5 127 -38 2 1470 216 0 0 0 chr4 116089800 116089824 -39540296 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1470 357 24 0 0 chr4 116089839 116089881 -39540239 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1470 411 253 112 0 chr4 116089981 116090151 -39539969 + L1M5 LINE L1 4423 4611 -1535 2 1470 295 368 68 48 chr4 116090199 116090450 -39539670 + ORR1D2 LTR MaLR 85 340 -30 2 1470 307 370 4 21 chr4 116090600 116090835 -39539285 + MuRRS4-int LTR ERV1 583 813 -6793 2 1470 1042 315 53 52 chr4 116091110 116092269 -39537851 + MuRRS4-int LTR ERV1 1100 2420 -5136 2 1470 1818 305 42 45 chr4 116092406 116093943 -39536177 + MuRRS4-int LTR ERV1 2791 5525 -2031 2 1470 478 315 18 39 chr4 116094466 116094747 -39535373 + RLTR6-int LTR ERV1 7447 7721 -57 2 1470 2233 91 158 0 chr4 116094841 116095226 -39534894 + RLTR47_MM LTR ERV1 1 446 -86 2 1470 1098 75 0 0 chr4 116095245 116095379 -39534741 + B1_Mus2 SINE Alu 1 134 -13 2 1470 189 0 0 0 chr4 116095379 116095400 -39534720 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1470 1446 78 0 5 chr4 116095414 116095606 -39534514 - B2_Mm2 SINE B2 -3 192 2 2 1470 1415 288 73 54 chr4 116095755 116095826 -39534294 + Lx9 LINE L1 6381 6452 -1192 2 1470 1085 67 0 0 chr4 116095826 116095961 -39534159 + B1_Mus1 SINE Alu 1 135 -13 2 1470 219 36 0 0 chr4 116095961 116095989 -39534131 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1470 1415 288 73 54 chr4 116095989 116096639 -39533481 + Lx9 LINE L1 6453 7116 -528 2 1470 1917 138 18 56 chr4 116096744 116097083 -39533037 - ORR1A3 LTR MaLR 0 326 1 2 1470 282 229 49 17 chr4 116097096 116097244 -39532876 - L1ME1 LINE L1 -207 5957 5806 2 1470 727 199 120 11 chr4 116097298 116097481 -39532639 - B3 SINE B2 -13 203 1 2 1470 236 160 20 0 chr4 116097636 116097686 -39532434 + Lx4A LINE L1 7007 7057 -1 2 1470 1641 29 19 0 chr4 116097710 116097917 -39532203 + L1Md_F2 LINE L1 6372 6582 0 2 1470 2669 185 39 8 chr4 116097973 116098463 -39531657 + RLTR16 LTR ERVK 1 505 0 2 1470 227 300 11 43 chr4 116098527 116098621 -39531499 + MER21B LTR ERV1 391 481 -382 2 1470 943 145 0 0 chr4 116098628 116098773 -39531347 + B2_Mm2 SINE B2 1 145 -50 2 1470 573 283 81 51 chr4 116098772 116098969 -39531151 + MER21B LTR ERV1 474 676 -187 2 1470 405 186 70 0 chr4 116099105 116099191 -39530929 + RLTR11A2 LTR ERVK 434 525 -2 2 1470 948 170 28 166 chr4 116099795 116099977 -39530143 + B3 SINE B2 2 166 -50 2 1470 423 0 0 0 chr4 116099977 116100024 -39530096 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1470 948 170 28 166 chr4 116100024 116100088 -39530032 + B3 SINE B2 167 214 -2 2 1470 535 128 165 60 chr4 116100098 116100231 -39529889 + B1_Mus2 SINE Alu 1 147 0 2 1470 182 37 37 0 chr4 116100233 116100260 -39529860 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2 1470 321 304 0 0 chr4 116100471 116100550 -39529570 - MER2B DNA MER2_type -180 156 78 2 1470 420 292 78 83 chr4 116100572 116100968 -39529152 + RLTR12B LTR ERVK 25 291 -68 2 1470 628 264 86 44 chr4 116101155 116101811 -39528309 + L1MB8 LINE L1 5318 6060 -118 2 1470 757 236 54 16 chr4 116102332 116102517 -39527603 + B3A SINE B2 3 194 -4 2 1470 23 0 0 0 chr4 116102601 116102624 -39527496 + AT_rich Low_complexity Low_complexity 1 23 0 2 1470 475 172 192 24 chr4 116102665 116102790 -39527330 + B1_Mm SINE Alu 1 146 -1 2 1470 236 314 29 0 chr4 116103628 116103698 -39526422 + ID_B1 SINE B4 142 213 -11 2 1470 1249 101 6 11 chr4 116103927 116104108 -39526012 + B2_Mm2 SINE B2 2 181 -14 2 1470 622 191 78 0 chr4 116104578 116104693 -39525427 + B3 SINE B2 6 129 -87 2 1470 38 22 0 0 chr4 116104729 116104774 -39525346 + AT_rich Low_complexity Low_complexity 1 45 0 2 1470 415 299 20 34 chr4 116104960 116105109 -39525011 + B1_Mur1 SINE Alu 3 149 0 2 1470 247 280 70 34 chr4 116105188 116105330 -39524790 + B3 SINE B2 45 190 -5 2 1470 647 214 6 43 chr4 116105439 116105466 -39524654 + ID_B1 SINE B4 70 223 0 2 1470 1076 30 8 0 chr4 116105466 116105599 -39524521 + B1_Mus2 SINE Alu 14 147 0 2 1470 562 241 298 12 chr4 116105612 116105773 -39524347 + B3 SINE B2 4 210 -6 2 1470 489 254 119 0 chr4 116105799 116105925 -39524195 + B1_Mus2 SINE Alu 1 141 -6 2 1470 298 279 0 12 chr4 116105943 116106030 -39524090 + B3A SINE B2 1 82 -134 2 1470 249 271 102 42 chr4 116106053 116106076 -39524044 + ID_B1 SINE B4 65 97 -195 2 1470 387 226 95 0 chr4 116106076 116106160 -39523960 + B1_Mm SINE Alu 3 94 -53 2 1470 535 267 127 90 chr4 116106158 116106347 -39523773 - B4 SINE B4 -12 280 85 2 1470 597 249 103 5 chr4 116106407 116106601 -39523519 - B3 SINE B2 -3 213 1 2 1470 536 262 7 93 chr4 116106644 116106783 -39523337 - B1_Mus1 SINE Alu -21 127 1 2 1470 292 254 166 104 chr4 116106783 116106940 -39523180 - MT2B2 LTR ERVL -327 257 89 2 1470 528 322 40 27 chr4 116106831 116106981 -39523139 + RSINE1 SINE B4 11 162 -3 2 1470 743 233 26 53 chr4 116107115 116107305 -39522815 + B2_Mm2 SINE B2 3 187 -8 2 1470 292 236 7 0 chr4 116107585 116107647 -39522473 + BC1_Mm scRNA scRNA 8 72 -11 2 1470 202 132 0 50 chr4 116107648 116107688 -39522432 + G-rich Low_complexity Low_complexity 4 41 0 2 1470 871 214 68 29 chr4 116108293 116108500 -39521620 + B3 SINE B2 2 216 0 2 1470 22 0 0 0 chr4 116108513 116108535 -39521585 + AT_rich Low_complexity Low_complexity 1 22 0 2 1470 250 328 47 0 chr4 116108561 116108625 -39521495 - RSINE1 SINE B4 -25 140 74 2 1470 239 133 0 22 chr4 116108940 116108986 -39521134 + CT-rich Low_complexity Low_complexity 2 46 0 2 1470 245 290 129 0 chr4 116109030 116109123 -39520997 + MLT1A0 LTR MaLR 221 325 -40 2 1470 276 294 78 0 chr4 116109157 116109259 -39520861 + B3A SINE B2 1 110 -88 2 1470 530 226 139 0 chr4 116109253 116109368 -39520752 - RSINE1 SINE B4 -24 141 11 2 1470 841 109 27 0 chr4 116110257 116110404 -39519716 + (TATG)n Simple_repeat Simple_repeat 4 154 0 2 1470 354 182 405 11 chr4 116110404 116110493 -39519627 - B3 SINE B2 -92 124 1 2 1470 475 244 0 0 chr4 116110577 116110667 -39519453 + B1_Mus2 SINE Alu 2 91 -56 2 1470 210 143 0 0 chr4 116110678 116110713 -39519407 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 1470 785 167 51 0 chr4 116111130 116111286 -39518834 + B2_Mm2 SINE B2 29 192 -3 2 1470 1060 204 0 5 chr4 116111336 116111523 -39518597 + B3 SINE B2 11 196 -20 2 1470 29 0 0 0 chr4 116111523 116111552 -39518568 + AT_rich Low_complexity Low_complexity 1 29 0 2 1470 1143 75 0 39 chr4 116111583 116111736 -39518384 + B1_Mus1 SINE Alu 2 148 0 2 1470 729 180 7 21 chr4 116111760 116111902 -39518218 + B1_Mus1 SINE Alu 9 148 0 2 1470 271 304 51 76 chr4 116111764 116111921 -39518199 + B4A SINE B4 94 246 -46 2 1470 589 150 21 28 chr4 116111928 116112072 -39518048 + GA-rich Low_complexity Low_complexity 3 145 0 2 1470 419 264 41 65 chr4 116112297 116112351 -39517769 + L1M4c LINE L1 1587 1641 -4743 2 1470 1304 61 38 22 chr4 116112351 116112534 -39517586 + B2_Mm2 SINE B2 2 187 -8 2 1470 419 264 41 65 chr4 116112534 116112649 -39517471 + L1M4c LINE L1 1642 1752 -4632 2 1470 195 42 0 0 chr4 116112652 116112676 -39517444 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 1470 559 179 9 0 chr4 116112678 116112784 -39517336 - B1_Mus2 SINE Alu -7 140 34 2 1470 387 0 0 0 chr4 116112916 116112959 -39517161 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1470 321 224 81 0 chr4 116112966 116113068 -39517052 - PB1D10 SINE Alu 0 120 9 2 1470 225 258 22 22 chr4 116113085 116113176 -39516944 + L1M4c LINE L1 1963 2053 -4331 2 1470 303 111 0 53 chr4 116113270 116113327 -39516793 + B1_Mur4 SINE Alu 97 150 0 2 1470 650 226 13 40 chr4 116113350 116113502 -39516618 + B1_Mus1 SINE Alu 1 148 0 3 1470 342 211 9 19 chr4 116113503 116113609 -39516511 + GA-rich Low_complexity Low_complexity 1 105 0 3 1470 43 57 0 11 chr4 116113622 116113666 -39516454 + AT_rich Low_complexity Low_complexity 1 44 0 3 1470 360 235 0 36 chr4 116113666 116113750 -39516370 + ID4 SINE ID 2 82 -1 3 1470 43 57 0 11 chr4 116113750 116113794 -39516326 + AT_rich Low_complexity Low_complexity 1 44 0 3 1470 690 288 17 12 chr4 116113915 116114087 -39516033 + ID_B1 SINE B4 1 173 -51 3 1470 255 343 39 29 chr4 116114006 116114108 -39516012 + PB1D10 SINE Alu 9 111 -6 3 1470 571 238 139 26 chr4 116114117 116114311 -39515809 + B3 SINE B2 1 216 0 3 1470 180 182 0 0 chr4 116114347 116114391 -39515729 + A-rich Low_complexity Low_complexity 1 44 0 3 1470 856 88 0 0 chr4 116114403 116114528 -39515592 + B1_Mus1 SINE Alu 24 148 0 3 1470 635 202 24 0 chr4 116114539 116114684 -39515436 + B1_Mur1 SINE Alu 2 149 0 3 1470 21 36 0 0 chr4 116114788 116114816 -39515304 + AT_rich Low_complexity Low_complexity 1 28 0 3 1470 530 202 57 73 chr4 116114825 116114914 -39515206 + B1_Mur2 SINE Alu 1 96 -53 3 1470 963 141 177 5 chr4 116114914 116115106 -39515014 - URR1B DNA MER1_type 0 225 1 3 1470 530 202 57 73 chr4 116115106 116115139 -39514981 + B1_Mur2 SINE Alu 97 121 -28 3 1470 533 236 60 7 chr4 116115287 116115436 -39514684 + B4A SINE B4 131 287 -5 3 1470 22 35 0 0 chr4 116115592 116115621 -39514499 + AT_rich Low_complexity Low_complexity 1 29 0 3 1470 3682 241 105 43 chr4 116115734 116116969 -39513151 - RMER1C Other Other -2 1340 29 3 1470 995 139 153 5 chr4 116117280 116117483 -39512637 - RMER1A Other Other -4 1026 794 3 1470 1054 35 21 7 chr4 116117657 116117800 -39512320 - L1Md_F2 LINE L1 0 6582 6438 3 1470 795 302 0 0 chr4 116117878 116118070 -39512050 - B3 SINE B2 -23 193 2 3 1470 503 314 65 7 chr4 116118284 116118438 -39511682 + B3A SINE B2 36 198 0 3 1470 448 277 45 0 chr4 116118545 116118657 -39511463 + B1_Mur1 SINE Alu 1 117 -32 3 1470 228 309 135 24 chr4 116118657 116118670 -39511450 + ID_B1 SINE B4 82 220 -4 3 1470 493 218 101 36 chr4 116118864 116119002 -39511118 + B1_Mur3 SINE Alu 3 149 0 3 1470 903 132 104 39 chr4 116119145 116119327 -39510793 - B2_Mm2 SINE B2 0 195 2 3 1470 531 249 160 5 chr4 116119455 116119649 -39510471 - ID_B1 SINE B4 0 224 1 3 1470 1128 37 15 0 chr4 116120302 116120437 -39509683 + B1_Mus1 SINE Alu 1 137 -11 3 1470 180 0 0 0 chr4 116120437 116120457 -39509663 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1470 233 174 21 21 chr4 116120743 116120790 -39509330 - RSINE1 SINE B4 -37 128 82 3 1470 1009 123 0 0 chr4 116122337 116122483 -39507637 + B1_Mus1 SINE Alu 3 148 0 3 1470 224 368 117 39 chr4 116122654 116122962 -39507158 - L2 LINE L2 -385 3034 2703 3 1470 226 239 30 129 chr4 116123008 116123109 -39507011 - MT2B2 LTR ERVL -312 272 182 3 1470 519 202 0 28 chr4 116123020 116123127 -39506993 - PB1D9 SINE Alu -14 106 3 3 1470 381 311 40 40 chr4 116123240 116123364 -39506756 + RSINE1 SINE B4 1 124 -41 3 1470 342 0 0 0 chr4 116123390 116123428 -39506692 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1470 1493 140 168 10 chr4 116123431 116123741 -39506379 + ORR1B2 LTR MaLR 1 359 -8 3 1470 333 284 55 9 chr4 116123796 116123906 -39506214 + B1F SINE Alu 32 146 -3 3 1470 290 250 0 0 chr4 116123910 116123978 -39506142 + B3A SINE B2 6 73 -125 3 1470 1006 202 58 0 chr4 116124159 116124347 -39505773 + B3 SINE B2 4 202 -14 3 1470 2815 122 33 65 chr4 116124347 116124386 -39505734 - MT2C_Mm LTR ERVL 0 475 450 3 1470 947 102 73 0 chr4 116124386 116124523 -39505597 + B1_Mus1 SINE Alu 2 148 0 3 1470 2815 122 33 65 chr4 116124523 116124974 -39505146 - MT2C_Mm LTR ERVL -26 449 1 3 1470 321 0 0 0 chr4 116124974 116125012 -39505108 - MERVL-int LTR ERVL 0 5485 5448 3 1470 325 151 13 40 chr4 116125012 116125088 -39505032 - ORR1A3-int LTR MaLR -1323 640 567 3 1470 4173 115 63 8 chr4 116125088 116125822 -39504298 - MERVL_2A-int LTR ERVL -132 5629 4716 3 1470 25730 105 24 7 chr4 116125800 116129335 -39500785 - MERVL_2A-int LTR ERVL -1197 4564 969 3 1470 240 192 0 0 chr4 116129343 116129395 -39500725 + RMER4A LTR ERVK 412 463 -3 3 1470 295 276 60 0 chr4 116129417 116129533 -39500587 - L1MA6 LINE L1 -5 6286 6164 3 1470 310 243 316 11 chr4 116129568 116129744 -39500376 - L1MA6 LINE L1 -247 6053 5816 3 183 348 24 0 0 chr4 116129757 116129798 -39500322 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1471 297 162 13 64 chr4 116129854 116129958 -39500162 - L1MA6 LINE L1 -598 5702 5601 3 1471 1660 230 91 32 chr4 116129978 116130485 -39499635 - L1MA6 LINE L1 -867 5276 4740 3 1471 730 207 178 6 chr4 116130516 116130696 -39499424 - B3 SINE B2 -4 212 2 3 1471 2671 169 177 19 chr4 116130947 116131473 -39498647 + RMER19C LTR ERVK 1 609 -2 3 1471 611 184 0 0 chr4 116131699 116131813 -39498307 + B1_Mus1 SINE Alu 35 148 0 3 1471 385 252 52 43 chr4 116132298 116132414 -39497706 - PB1D10 SINE Alu 0 117 1 3 1471 483 308 8 8 chr4 116132503 116132637 -39497483 + B1_Mur2 SINE Alu 3 136 -13 3 1471 409 268 71 0 chr4 116132659 116132755 -39497365 + B4 SINE B4 128 231 -61 3 1471 437 330 20 85 chr4 116132755 116132954 -39497166 + B3A SINE B2 1 186 -12 3 1471 911 164 0 0 chr4 116132976 116133122 -39496998 + B1_Mur4 SINE Alu 5 150 0 3 1471 437 122 14 0 chr4 116133123 116133197 -39496923 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1471 270 0 0 0 chr4 116133272 116133302 -39496818 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1471 365 310 108 19 chr4 116133818 116134180 -39495940 + L1ME3 LINE L1 5769 6162 0 3 1471 360 0 0 0 chr4 116134265 116134305 -39495815 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1471 913 89 0 0 chr4 116134342 116134465 -39495655 + B1_Mus1 SINE Alu 18 140 -8 3 1471 809 226 74 15 chr4 116134723 116134925 -39495195 + B3 SINE B2 3 216 0 3 1471 488 198 288 18 chr4 116134952 116135122 -39494998 + B3 SINE B2 1 216 0 3 1471 21 36 0 0 chr4 116136394 116136422 -39493698 + GC_rich Low_complexity Low_complexity 1 28 0 3 1471 280 201 43 29 chr4 116136736 116136874 -39493246 + (CCCG)n Simple_repeat Simple_repeat 4 143 0 3 1471 24 0 0 0 chr4 116136918 116136942 -39493178 + GC_rich Low_complexity Low_complexity 1 24 0 3 1471 188 297 176 0 chr4 116137136 116137210 -39492910 - MIR3 SINE MIR -37 171 85 3 1471 305 357 60 8 chr4 116137859 116138124 -39491996 + L2 LINE L2 2502 2780 -639 3 1471 955 81 73 0 chr4 116138237 116138373 -39491747 - B1_Mus1 SINE Alu 0 148 3 3 1471 440 233 22 0 chr4 116138627 116138717 -39491403 + ID_B1 SINE B4 1 92 -132 3 1471 189 0 0 0 chr4 116138820 116138841 -39491279 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1471 1609 52 0 5 chr4 116139049 116139243 -39490877 + B2_Mm2 SINE B2 1 193 -2 3 1471 290 295 25 22 chr4 116139250 116139389 -39490731 + MLT1F2 LTR MaLR 1 140 -540 3 1471 248 322 11 126 chr4 116139581 116139755 -39490365 + MLT1F2 LTR MaLR 339 492 -188 3 1471 1390 147 20 8 chr4 116139755 116140002 -39490118 + RMER4A LTR ERVK 1 250 -216 3 1471 8032 151 51 15 chr4 116140005 116141358 -39488762 + MurERV4-int LTR ERVK 55 1456 -3804 3 1471 1999 155 38 28 chr4 116141358 116141806 -39488314 - MT2B LTR ERVL 0 601 8 3 1471 1334 234 35 93 chr4 116141807 116142174 -39487946 + MurERV4-int LTR ERVK 1446 1791 -3469 3 1471 1677 142 65 4 chr4 116142185 116142483 -39487637 + MurERV4-int LTR ERVK 4975 5259 -1 3 1471 2212 128 37 128 chr4 116142483 116142968 -39487152 + RMER4A LTR ERVK 1 441 -25 3 1471 309 323 17 8 chr4 116142983 116143120 -39487000 + MLT1E1A LTR MaLR 361 621 -59 3 1471 1606 218 73 23 chr4 116143130 116143529 -39486591 + MTD LTR MaLR 1 419 0 3 1471 720 265 16 6 chr4 116143529 116143711 -39486409 + B3A SINE B2 2 185 -13 3 1471 279 224 0 0 chr4 116143740 116143789 -39486331 + PB1D9 SINE Alu 1 49 -71 3 1471 387 0 0 0 chr4 116143807 116143850 -39486270 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1471 542 353 14 60 chr4 116143922 116144205 -39485915 - B4A SINE B4 -5 287 18 3 1471 962 93 65 0 chr4 116144405 116144544 -39485576 + B1_Mus1 SINE Alu 1 148 0 3 1471 233 28 0 77 chr4 116144954 116144993 -39485127 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 3 1471 2004 91 36 0 chr4 116145003 116145311 -39484809 + ORR1A2 LTR MaLR 1 319 -8 3 1471 237 295 13 0 chr4 116145315 116145393 -39484727 + L1MC5 LINE L1 7320 7398 -563 3 1471 1252 233 217 61 chr4 116145395 116145856 -39484264 - MT2A LTR ERVL 0 533 1 3 1471 397 264 94 75 chr4 116146176 116146493 -39483627 - L1MC4a LINE L1 -890 7071 6755 3 1471 226 273 62 57 chr4 116146535 116146729 -39483391 + L2 LINE L2 2512 2706 -713 3 1471 373 241 9 53 chr4 116146752 116146866 -39483254 - PB1D10 SINE Alu 0 117 9 3 1471 183 100 0 0 chr4 116146943 116146973 -39483147 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 1471 259 286 14 0 chr4 116146978 116147048 -39483072 - ID4 SINE ID -12 71 1 3 1471 6771 88 43 37 chr4 116147987 116148605 -39481515 - Lx2 LINE L1 0 6997 6398 3 1471 1163 75 7 0 chr4 116148605 116148752 -39481368 - B1_Mus1 SINE Alu 0 148 1 3 1471 6771 88 43 37 chr4 116148752 116149184 -39480936 - Lx2 LINE L1 -600 6397 5941 3 1471 5037 126 10 108 chr4 116149187 116150475 -39479645 + Lx LINE L1 4818 5944 -710 3 1471 343 251 47 142 chr4 116150519 116150709 -39479411 + Cheshire DNA MER1_type 2112 2283 -137 3 1471 735 191 38 15 chr4 116150710 116150843 -39479277 + B1_Mus1 SINE Alu 3 138 -10 3 1471 1152 162 46 14 chr4 116150889 116151108 -39479012 - URR1A DNA MER1_type 0 226 1 3 1471 386 309 56 16 chr4 116151710 116151835 -39478285 + RSINE1 SINE B4 28 157 -8 3 1471 641 212 22 14 chr4 116152804 116152943 -39477177 + B1_Mur2 SINE Alu 2 141 -8 3 1471 636 202 0 31 chr4 116152993 116153121 -39476999 - B3 SINE B2 -92 124 1 3 1471 4018 86 11 2 chr4 116153256 116153825 -39476295 - MT2B2 LTR ERVL -8 576 3 3 1471 334 57 38 0 chr4 116154570 116154623 -39475497 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1471 484 276 57 8 chr4 116154707 116154831 -39475289 + RSINE1 SINE B4 7 136 -29 4 1471 618 184 0 0 chr4 116154868 116154993 -39475127 + GA-rich Low_complexity Low_complexity 2 126 0 4 1471 223 298 0 0 chr4 116155017 116155064 -39475056 + ID4 SINE ID 23 69 -14 4 1471 314 388 16 8 chr4 116155100 116155222 -39474898 + PB1 SINE Alu 3 125 -2 4 1471 504 119 5 0 chr4 116155563 116155648 -39474472 - B3A SINE B2 -127 89 2 4 1471 435 279 36 58 chr4 116155676 116155813 -39474307 + B1_Mur1 SINE Alu 2 135 -14 4 1471 399 274 53 23 chr4 116155832 116155963 -39474157 - RSINE1 SINE B4 -11 154 20 4 1471 284 122 0 58 chr4 116156639 116156691 -39473429 + BC1_Mm scRNA scRNA 2 50 -102 4 1471 264 214 32 63 chr4 116156705 116156721 -39473399 + polypurine Low_complexity Low_complexity 3 18 0 4 1471 504 0 0 0 chr4 116156721 116156777 -39473343 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1471 264 214 32 63 chr4 116156777 116156855 -39473265 + polypurine Low_complexity Low_complexity 19 94 0 4 1471 273 254 0 0 chr4 116156912 116156983 -39473137 + RSINE1 SINE B4 12 82 -83 4 1471 639 0 0 0 chr4 116157022 116157093 -39473027 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1471 269 156 0 0 chr4 116157128 116157173 -39472947 + RSINE1 SINE B4 81 125 -40 4 1471 596 231 35 14 chr4 116157489 116157634 -39472486 - B1F SINE Alu -1 148 1 4 1471 513 0 0 0 chr4 116157813 116157870 -39472250 + (GTTTG)n Simple_repeat Simple_repeat 5 61 0 4 1471 331 268 72 0 chr4 116157870 116157967 -39472153 - PB1D10 SINE Alu -13 104 1 4 1471 602 286 12 6 chr4 116157967 116158047 -39472073 - ID SINE ID -142 82 2 4 1471 1672 246 68 6 chr4 116158117 116158584 -39471536 + RCHARR1 DNA MER1_type 3 498 -476 4 1471 303 28 0 0 chr4 116158723 116158759 -39471361 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1471 1174 125 51 0 chr4 116158778 116158954 -39471166 + B2_Mm2 SINE B2 1 185 -10 4 1471 715 216 0 0 chr4 116158958 116159106 -39471014 + RCHARR1 DNA MER1_type 531 678 -296 4 1471 498 257 0 0 chr4 116159109 116159214 -39470906 - B1_Mur2 SINE Alu -43 106 2 4 1471 685 113 0 139 chr4 116159263 116159407 -39470713 - ORR1C1 LTR MaLR -231 147 24 4 1471 558 240 132 0 chr4 116159421 116159550 -39470570 - B3A SINE B2 -52 146 1 4 1471 502 196 29 22 chr4 116159559 116159695 -39470425 + RCHARR1 DNA MER1_type 836 972 -2 4 1471 4205 48 2 10 chr4 116159756 116160277 -39469843 - L1Md_F2 LINE L1 0 6582 6066 4 1471 1212 68 0 0 chr4 116160587 116160735 -39469385 - B1_Mus1 SINE Alu 0 148 1 4 1471 231 167 0 0 chr4 116160945 116160987 -39469133 + GA-rich Low_complexity Low_complexity 1 42 0 4 1471 242 288 55 0 chr4 116161121 116161194 -39468926 + 4.5SRNA scRNA scRNA 12 88 -6 4 1471 489 239 0 74 chr4 116161132 116161223 -39468897 + ID_B1 SINE B4 112 200 -24 4 1471 3647 152 116 5 chr4 116161223 116161846 -39468274 - RLTR17 LTR ERVK 0 692 1 4 1471 489 239 0 74 chr4 116161846 116161876 -39468244 + ID_B1 SINE B4 201 224 0 4 1471 234 184 40 0 chr4 116161905 116161981 -39468139 + GA-rich Low_complexity Low_complexity 2 80 0 4 1471 989 66 0 14 chr4 116161986 116162124 -39467996 + B1_Mm SINE Alu 11 146 -1 4 1471 318 87 0 0 chr4 116162134 116162180 -39467940 + (GGA)n Simple_repeat Simple_repeat 3 48 0 4 1471 363 273 66 63 chr4 116162651 116162918 -39467202 + MTEb LTR MaLR 97 377 -2 4 1471 209 319 26 0 chr4 116163332 116163445 -39466675 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 4 1471 800 231 0 0 chr4 116164166 116164313 -39465807 - RSINE1 SINE B4 -16 149 3 4 1471 189 392 37 0 chr4 116164361 116164468 -39465652 - MIRb SINE MIR -122 146 36 4 1471 420 20 0 0 chr4 116165624 116165673 -39464447 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1471 238 310 0 0 chr4 116165675 116165733 -39464387 + polypurine Low_complexity Low_complexity 2 59 0 4 1471 377 109 16 0 chr4 116165737 116165801 -39464319 + (CCA)n Simple_repeat Simple_repeat 1 65 0 4 1471 470 253 102 62 chr4 116165947 116166065 -39464055 - B3A SINE B2 -13 185 64 4 1471 2962 189 127 14 chr4 116166065 116166725 -39463395 + RMER19A LTR ERVK 3 737 0 4 1471 470 253 102 62 chr4 116166725 116166783 -39463337 - B3A SINE B2 -135 63 2 4 1471 238 286 42 12 chr4 116166791 116166888 -39463232 - ID4 SINE ID -48 104 3 4 1471 361 191 0 31 chr4 116166898 116166995 -39463125 + T-rich Low_complexity Low_complexity 2 95 0 4 1471 497 276 13 40 chr4 116167012 116167163 -39462957 + RSINE1 SINE B4 2 148 -17 4 1471 273 57 0 0 chr4 116167179 116167214 -39462906 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1471 434 302 7 93 chr4 116167244 116167383 -39462737 - PB1 SINE Alu 0 127 1 4 1471 1171 108 7 0 chr4 116167432 116167580 -39462540 - B1_Mur4 SINE Alu -1 149 1 4 1471 296 299 0 0 chr4 116167587 116167664 -39462456 - L1MD LINE L1 -3069 3077 3001 4 1471 475 287 14 29 chr4 116167756 116167896 -39462224 - B3 SINE B2 -1 215 78 4 1471 2285 130 57 18 chr4 116167863 116168247 -39461873 - MTB_Mm LTR MaLR -8 399 1 4 1471 264 193 25 20 chr4 116168247 116168327 -39461793 - B3A SINE B2 -134 82 2 4 1471 546 267 67 16 chr4 116168339 116168594 -39461526 - L1MEc LINE L1 -3196 3123 2856 4 1471 625 245 107 0 chr4 116168600 116168759 -39461361 + ID_B1 SINE B4 3 178 -46 4 1471 666 173 18 0 chr4 116168768 116168878 -39461242 + PB1D9 SINE Alu 1 112 -8 4 1471 183 42 0 0 chr4 116168897 116168921 -39461199 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 4 1471 3497 48 2 2 chr4 116169116 116169512 -39460608 - MTA_Mm LTR MaLR 0 396 1 4 1471 289 264 89 16 chr4 116169571 116169694 -39460426 - L1MEc LINE L1 -5201 1199 1068 4 1471 380 221 25 25 chr4 116169738 116169817 -39460303 - ID4 SINE ID -2 81 3 4 1471 264 77 0 49 chr4 116169890 116169931 -39460189 - ID4 SINE ID -36 47 9 4 1471 336 325 39 23 chr4 116169957 116170086 -39460034 - B1F1 SINE Alu -9 140 10 4 1471 1416 68 4 150 chr4 116170142 116170368 -39459752 + B2_Mm2 SINE B2 1 193 -2 4 1471 1129 102 0 0 chr4 116170379 116170526 -39459594 + B1_Mus1 SINE Alu 2 148 0 4 1471 26 0 0 0 chr4 116170526 116170552 -39459568 + AT_rich Low_complexity Low_complexity 1 26 0 4 1471 305 47 23 0 chr4 116170552 116170595 -39459525 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1471 1097 207 14 24 chr4 116170730 116170943 -39459177 - B3 SINE B2 -5 211 1 4 1471 268 254 279 15 chr4 116170946 116171082 -39459038 - L1MEc LINE L1 -5567 833 662 4 1471 1088 200 18 45 chr4 116171385 116171605 -39458515 + B3 SINE B2 3 216 0 4 1471 231 228 104 88 chr4 116171652 116171777 -39458343 - RMER10B LTR ERVL -15 383 257 4 1471 225 0 0 0 chr4 116172094 116172119 -39458001 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1471 27 73 0 0 chr4 116172132 116172187 -39457933 + AT_rich Low_complexity Low_complexity 1 55 0 4 1471 258 128 0 0 chr4 116172445 116172484 -39457636 - MER5B DNA MER1_type -139 39 1 4 1471 22 56 0 0 chr4 116173124 116173160 -39456960 + AT_rich Low_complexity Low_complexity 1 36 0 4 1471 213 244 0 0 chr4 116173165 116173206 -39456914 + B3A SINE B2 6 46 -152 4 1471 244 286 0 57 chr4 116173173 116173252 -39456868 - B1_Mus1 SINE Alu -77 72 3 4 1471 2248 85 3 59 chr4 116173415 116173753 -39456367 - ORR1A2 LTR MaLR -8 319 1 4 1471 2261 120 28 20 chr4 116173763 116174119 -39456001 - RLTR15 LTR ERVK 0 359 1 4 1471 314 274 125 19 chr4 116174168 116174272 -39455848 - PB1D10 SINE Alu -1 116 2 4 1471 267 293 127 24 chr4 116174342 116174468 -39455652 + L1MC4 LINE L1 6751 6889 -1153 4 1471 2356 61 4 0 chr4 116174482 116174759 -39455361 - L1_Mus1 LINE L1 0 6567 6290 4 1471 335 95 2 0 chr4 116174760 116174811 -39455309 + L1_Mus1 LINE L1 6249 6306 -278 4 1471 3161 67 54 0 chr4 116174846 116175236 -39454884 + RLTR10A LTR ERVK 1 411 0 4 1471 1079 217 59 0 chr4 116175253 116175456 -39454664 - B3 SINE B2 0 216 2 4 1471 802 262 12 0 chr4 116175464 116175628 -39454492 - B3A SINE B2 -32 166 1 4 1471 592 292 124 35 chr4 116175747 116176006 -39454114 - ORR1E LTR MaLR -37 322 41 4 1471 1017 192 16 5 chr4 116176145 116176333 -39453787 + MTC LTR MaLR 224 413 -8 4 1471 199 330 142 64 chr4 116176402 116176635 -39453485 - L2a LINE L2 -252 3174 2924 4 1471 423 253 0 0 chr4 116176747 116176830 -39453290 - B3 SINE B2 -92 124 42 4 1471 659 178 0 17 chr4 116176855 116176975 -39453145 - B1_Mur3 SINE Alu 0 149 32 4 1471 237 246 193 0 chr4 116177030 116177087 -39453033 - L2a LINE L2 -536 2883 2816 4 1471 1071 273 55 39 chr4 116177088 116177450 -39452670 - L1MB7 LINE L1 -3 6181 5814 4 1471 584 253 71 42 chr4 116177807 116178047 -39452073 - L1MA4A LINE L1 -351 5952 5638 4 1471 929 261 25 55 chr4 116178049 116178374 -39451746 - L1MB7 LINE L1 -356 5828 5514 4 1471 520 125 333 75 chr4 116178468 116178615 -39451505 - B2_Mm2 SINE B2 -9 186 2 4 1471 1064 74 195 0 chr4 116178615 116178764 -39451356 - B2_Mm1t SINE B2 -14 179 2 4 1471 574 145 126 16 chr4 116178772 116178933 -39451187 - B3 SINE B2 0 216 8 4 1471 280 244 24 32 chr4 116179137 116179260 -39450860 + MER112 DNA MER1_type 131 252 -9 4 1471 303 227 230 118 chr4 116179260 116179297 -39450823 + B3A SINE B2 2 35 -163 4 1471 769 212 0 14 chr4 116179297 116179445 -39450675 - B1_Mur2 SINE Alu -2 147 2 4 1471 303 227 230 118 chr4 116179445 116179542 -39450578 + B3A SINE B2 36 151 -47 4 1471 877 139 16 0 chr4 116179598 116179727 -39450393 + B1_Mus2 SINE Alu 1 131 -16 4 1471 356 167 33 0 chr4 116181321 116181381 -39448739 - PB1D9 SINE Alu -14 106 45 4 1471 734 239 0 14 chr4 116181978 116182118 -39448002 + B1_Mur1 SINE Alu 12 149 0 4 1471 299 262 70 4 chr4 116182176 116182277 -39447843 + B1F1 SINE Alu 1 107 -42 4 1471 189 0 0 0 chr4 116182556 116182577 -39447543 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1471 1281 55 0 0 chr4 116182577 116182723 -39447397 - B1_Mm SINE Alu 0 147 2 4 1471 303 120 80 0 chr4 116183477 116183527 -39446593 - ORR1D2 LTR MaLR 0 370 317 4 1471 370 105 355 19 chr4 116183579 116183686 -39446434 - B2_Mm2 SINE B2 -6 189 47 5 1471 1095 98 30 0 chr4 116183745 116183909 -39446211 - B2_Mm1t SINE B2 -22 171 3 5 1471 719 222 78 31 chr4 116183909 116184100 -39446020 - B3 SINE B2 -15 201 2 5 1471 739 253 12 36 chr4 116184199 116184367 -39445753 + RSINE1 SINE B4 2 165 0 5 1471 706 230 59 7 chr4 116184466 116184602 -39445518 + B3 SINE B2 1 143 -73 5 1471 876 149 286 0 chr4 116184676 116184844 -39445276 - B3 SINE B2 0 216 1 5 1471 186 255 0 0 chr4 116184982 116185033 -39445087 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1471 788 169 8 0 chr4 116185033 116185157 -39444963 - B1_Mur2 SINE Alu -4 145 21 5 1471 1106 85 0 21 chr4 116185242 116185378 -39444742 + B1_Mm SINE Alu 2 137 -10 5 1471 298 0 48 0 chr4 116185378 116185420 -39444700 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1471 623 252 58 0 chr4 116185463 116185602 -39444518 + B1_Mur1 SINE Alu 3 149 0 5 1471 1334 27 0 0 chr4 116185615 116185762 -39444358 + B1_Mus2 SINE Alu 1 147 0 5 1471 189 0 0 0 chr4 116185781 116185802 -39444318 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 1471 299 289 40 0 chr4 116185809 116185885 -39444235 + ID4_ SINE ID 3 81 -2 5 1471 464 259 44 18 chr4 116186009 116186123 -39443997 + PB1D10 SINE Alu 1 117 0 5 1471 234 0 0 0 chr4 116186214 116186240 -39443880 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1471 1048 159 48 21 chr4 116186248 116186434 -39443686 + B2_Mm2 SINE B2 1 191 -4 5 1471 236 339 15 0 chr4 116186549 116186614 -39443506 + ID_B1 SINE B4 84 149 -75 5 1471 1251 55 0 0 chr4 116186614 116186759 -39443361 + B1_Mus1 SINE Alu 2 146 -2 5 1471 616 232 80 15 chr4 116186919 116187120 -39443000 - B3 SINE B2 0 216 3 5 1471 365 173 235 0 chr4 116187169 116187250 -39442870 + B1_Mus1 SINE Alu 2 101 -47 5 1471 284 289 106 0 chr4 116187260 116187364 -39442756 + MIR SINE MIR 139 253 -9 5 1471 669 203 112 8 chr4 116187369 116187503 -39442617 - B1F2 SINE Alu 0 149 2 5 1471 441 0 0 0 chr4 116188158 116188207 -39441913 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1471 1042 310 11 7 chr4 116188248 116188521 -39441599 - B4A SINE B4 -1 291 18 5 1471 270 0 0 0 chr4 116188713 116188743 -39441377 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1471 940 150 0 0 chr4 116188775 116188915 -39441205 - B1_Mus1 SINE Alu -7 141 2 5 1471 385 316 29 29 chr4 116189208 116189345 -39440775 - ID_B1 SINE B4 -9 215 79 5 1471 626 67 56 0 chr4 116189366 116189456 -39440664 - B1_Mus2 SINE Alu 0 147 53 5 1471 283 100 50 0 chr4 116189456 116189516 -39440604 + B2_Mm1t SINE B2 131 193 0 5 1471 685 266 21 0 chr4 116189793 116189936 -39440184 + B1F2 SINE Alu 3 148 -1 5 1471 564 15 0 0 chr4 116190036 116190101 -39440019 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1471 794 257 34 13 chr4 116190104 116190290 -39439830 - B3 SINE B2 -25 173 2 5 1471 730 199 29 7 chr4 116190293 116190430 -39439690 - ID_B1 SINE B4 -4 220 81 5 1471 241 301 40 101 chr4 116190298 116190446 -39439674 + YREP_Mm Unknown Unknown 186 324 -1488 5 1471 590 233 0 8 chr4 116191348 116191465 -39438655 + PB1D9 SINE Alu 5 120 0 5 1471 838 130 0 18 chr4 116191466 116191631 -39438489 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 5 1471 293 194 48 0 chr4 116191714 116191776 -39438344 + B3 SINE B2 151 215 -1 5 1471 1269 103 0 71 chr4 116191786 116191829 -39438291 - B2_Mm2 SINE B2 -10 185 156 5 1471 393 22 0 0 chr4 116191829 116191875 -39438245 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1471 1269 103 0 71 chr4 116191875 116192029 -39438091 - B2_Mm2 SINE B2 -40 155 2 5 1471 288 281 0 33 chr4 116192069 116192176 -39437944 - ID4_ SINE ID -37 115 16 5 1471 227 313 0 15 chr4 116192115 116192183 -39437937 - tRNA-Ala-GCY_ tRNA tRNA -6 69 3 5 1471 28 29 0 0 chr4 116192254 116192289 -39437831 + AT_rich Low_complexity Low_complexity 1 35 0 5 1471 513 331 26 0 chr4 116192317 116192468 -39437652 - RSINE1 SINE B4 -8 157 3 5 1471 1453 77 0 11 chr4 116192484 116192643 -39437477 + B2_Mm1t SINE B2 2 160 -33 5 1471 210 37 0 0 chr4 116192643 116192670 -39437450 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1471 1453 77 0 11 chr4 116192670 116192694 -39437426 + B2_Mm1t SINE B2 161 183 -10 5 1471 310 183 80 196 chr4 116192805 116193029 -39437091 - B3A SINE B2 0 198 1 5 1471 688 202 0 0 chr4 116193076 116193195 -39436925 - PB1D9 SINE Alu 0 120 2 5 1471 4193 50 40 12 chr4 116193674 116194179 -39435941 - MURVY-LTR LTR ERV1 0 519 1 5 1471 584 359 0 0 chr4 116194200 116194359 -39435761 - RSINE1 SINE B4 -2 163 5 5 1471 526 297 43 0 chr4 116194391 116194529 -39435591 + B1F SINE Alu 2 145 -4 5 1471 1286 84 77 11 chr4 116194538 116194719 -39435401 + B2_Mm2 SINE B2 2 194 -1 5 1471 21 0 0 0 chr4 116195430 116195451 -39434669 + AT_rich Low_complexity Low_complexity 1 21 0 5 1471 22 0 0 0 chr4 116195521 116195543 -39434577 + AT_rich Low_complexity Low_complexity 1 22 0 5 1471 212 56 83 0 chr4 116195675 116195711 -39434409 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 5 1471 1138 115 0 0 chr4 116195717 116195865 -39434255 - B1_Mus1 SINE Alu 0 148 1 5 1471 252 0 0 0 chr4 116195869 116195897 -39434223 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1471 1120 111 0 0 chr4 116195899 116196043 -39434077 - B1_Mus1 SINE Alu -4 144 1 5 1471 600 247 6 64 chr4 116196081 116196254 -39433866 - RSINE1 SINE B4 0 165 3 5 1471 311 276 336 0 chr4 116196322 116196456 -39433664 - B3A SINE B2 -18 180 2 5 1471 376 207 23 11 chr4 116197663 116197751 -39432369 + ID_B1 SINE B4 133 221 -3 5 1471 826 272 41 0 chr4 116197761 116197956 -39432164 + B3 SINE B2 9 211 -5 5 1471 818 170 13 26 chr4 116197989 116198140 -39431980 + B1_Mur4 SINE Alu 2 150 0 5 1471 486 355 64 0 chr4 116198900 116199041 -39431079 - RSINE1 SINE B4 -15 150 1 5 1471 502 165 21 21 chr4 116199130 116199223 -39430897 + B1_Mur4 SINE Alu 58 150 0 5 1471 189 74 0 0 chr4 116199224 116199251 -39430869 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1471 718 167 83 0 chr4 116199257 116199377 -39430743 + B1_Mur2 SINE Alu 5 134 -15 5 1471 502 171 0 0 chr4 116199902 116199984 -39430136 - MER68 LTR ERVL -349 214 133 5 1471 6555 84 27 9 chr4 116200026 116200916 -39429204 - Lx3C LINE L1 -2 6974 6069 5 1471 3995 104 9 7 chr4 116200916 116201570 -39428550 - Lx3C LINE L1 -1049 5927 5272 5 1471 1150 62 7 33 chr4 116201572 116201723 -39428397 - B1_Mus2 SINE Alu 0 147 1 5 1471 1384 98 16 0 chr4 116201967 116202151 -39427969 - B2_Mm2 SINE B2 -8 187 1 5 1471 487 163 182 15 chr4 116202523 116202660 -39427460 - RMER4A LTR ERVK -290 176 17 5 1471 440 234 36 45 chr4 116202687 116202799 -39427321 + PB1D9 SINE Alu 10 120 0 5 1471 220 278 42 0 chr4 116202895 116202967 -39427153 + MIR3 SINE MIR 106 180 -28 5 1471 324 0 0 0 chr4 116203357 116203393 -39426727 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1471 589 226 63 35 chr4 116203426 116203568 -39426552 + RSINE1 SINE B4 20 165 0 5 1471 2499 128 80 73 chr4 116203773 116203822 -39426298 + RMER4A LTR ERVK 1 44 -422 5 1471 1319 78 5 53 chr4 116203822 116204012 -39426108 + B2_Mm2 SINE B2 1 181 -14 5 1471 2499 128 80 73 chr4 116204012 116204425 -39425695 + RMER4A LTR ERVK 45 466 0 5 1471 699 171 0 0 chr4 116204433 116204544 -39425576 + PB1D9 SINE Alu 10 120 0 5 1471 232 359 133 52 chr4 116204581 116204716 -39425404 + RSINE1 SINE B4 2 147 -18 5 1471 180 0 0 0 chr4 116204967 116204987 -39425133 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1471 580 177 142 24 chr4 116204989 116205116 -39425004 - B1_Mur2 SINE Alu -6 143 2 5 1471 812 223 84 11 chr4 116205680 116205870 -39424250 + B3 SINE B2 6 209 -7 5 1471 235 185 92 0 chr4 116205929 116205994 -39424126 - L1MC LINE L1 -3136 3010 2940 5 1471 455 276 0 0 chr4 116206021 116206119 -39424001 - B3A SINE B2 -96 102 5 5 1471 26 74 0 0 chr4 116206128 116206182 -39423938 + AT_rich Low_complexity Low_complexity 1 54 0 5 1471 22 56 0 0 chr4 116206292 116206328 -39423792 + AT_rich Low_complexity Low_complexity 1 36 0 5 1471 564 325 7 19 chr4 116206404 116206558 -39423562 - RSINE1 SINE B4 -2 163 12 5 1471 24 0 0 0 chr4 116206558 116206582 -39423538 + AT_rich Low_complexity Low_complexity 1 24 0 5 1471 419 0 20 0 chr4 116206582 116206633 -39423487 + (TTA)n Simple_repeat Simple_repeat 3 54 0 5 1471 298 254 24 120 chr4 116206653 116206682 -39423438 - B1F1 SINE Alu -1 148 125 5 1471 830 203 21 0 chr4 116206682 116206825 -39423295 + B1_Mur4 SINE Alu 5 150 0 5 1471 298 254 24 120 chr4 116206825 116206920 -39423200 - B1F1 SINE Alu -25 124 36 5 1471 229 217 0 0 chr4 116206920 116206966 -39423154 - L1MD LINE L1 -3325 2821 2776 5 1471 275 279 58 11 chr4 116206971 116207058 -39423062 - L1M5 LINE L1 -3424 2722 2632 5 1471 294 281 37 1 chr4 116207069 116207176 -39422944 - L1M5 LINE L1 -3574 2572 2465 5 1471 1069 132 0 0 chr4 116207429 116207573 -39422547 + B1_Mur3 SINE Alu 5 148 -1 5 1471 25 0 0 0 chr4 116207573 116207598 -39422522 + AT_rich Low_complexity Low_complexity 1 25 0 5 1471 761 261 15 46 chr4 116207600 116207797 -39422323 - B3A SINE B2 -1 197 7 5 1471 968 145 209 28 chr4 116207805 116207819 -39422301 - B3 SINE B2 -4 212 203 5 1471 777 67 0 0 chr4 116207819 116207923 -39422197 + (TTTC)n Simple_repeat Simple_repeat 1 104 0 5 1471 968 145 209 28 chr4 116207923 116208085 -39422035 - B3 SINE B2 -14 202 4 5 1471 795 240 0 0 chr4 116208111 116208257 -39421863 - B1_Mur1 SINE Alu -3 146 1 5 1471 1457 77 44 0 chr4 116208329 116208512 -39421608 + B2_Mm2 SINE B2 2 192 -3 6 1471 3542 101 6 9 chr4 116208516 116209044 -39421076 + L1_Mur2 LINE L1 3611 4136 -1741 6 1471 2149 160 40 29 chr4 116209044 116209418 -39420702 - ORR1C2 LTR MaLR -2 382 5 6 1471 216 0 0 0 chr4 116209511 116209535 -39420585 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1471 769 93 0 0 chr4 116209535 116209642 -39420478 - B1_Mus2 SINE Alu 0 147 41 6 1471 845 239 92 44 chr4 116209786 116209992 -39420128 - B3 SINE B2 0 216 1 6 1471 1120 58 73 0 chr4 116210107 116210244 -39419876 + B1_Mus2 SINE Alu 1 147 0 6 1471 183 100 0 0 chr4 116210244 116210274 -39419846 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1471 1338 88 22 16 chr4 116210928 116211112 -39419008 + B2_Mm2 SINE B2 2 186 -9 6 1471 1001 145 21 0 chr4 116211392 116211537 -39418583 - B1_Mur2 SINE Alu 0 149 2 6 1471 343 192 145 166 chr4 116211641 116211693 -39418427 - B2_Mm2 SINE B2 -6 189 149 6 1471 924 204 5 32 chr4 116211693 116211880 -39418240 - B3A SINE B2 -16 182 1 6 1471 406 173 247 69 chr4 116211880 116212020 -39418100 - B3 SINE B2 -47 148 1 6 1471 253 297 189 0 chr4 116212267 116212341 -39417779 - B1F SINE Alu -60 89 2 6 1471 1247 62 0 0 chr4 116212611 116212756 -39417364 - B1_Mus1 SINE Alu 0 148 4 6 1471 1498 76 38 0 chr4 116213071 116213256 -39416864 + B2_Mm2 SINE B2 1 192 -3 6 1471 546 234 28 44 chr4 116213514 116213696 -39416424 + ID_B1 SINE B4 43 224 -68 6 1471 966 74 0 29 chr4 116213562 116213701 -39416419 + B1_Mus1 SINE Alu 14 148 0 6 1471 220 274 110 0 chr4 116213724 116213797 -39416323 + ID4 SINE ID 2 82 -1 6 1471 350 261 108 65 chr4 116213857 116213996 -39416124 + B1_Mur1 SINE Alu 1 145 -4 6 1471 607 230 80 15 chr4 116214028 116214165 -39415955 + B1_Mur4 SINE Alu 5 150 0 6 1471 544 244 96 16 chr4 116214177 116214302 -39415818 - B1_Mur2 SINE Alu -14 135 1 6 1471 915 157 127 0 chr4 116214310 116214476 -39415644 - B2_Mm2 SINE B2 -6 189 3 6 1471 4447 12 0 95 chr4 116215095 116215640 -39414480 + MT2_Mm LTR ERVL 1 493 0 6 1471 48400 14 6 0 chr4 116215640 116220966 -39409154 + MERVL-int LTR ERVL 1 5360 -125 6 1471 387 167 46 35 chr4 116220966 116221053 -39409067 + ORR1A3-int LTR MaLR 553 640 -1323 6 1471 322 0 0 0 chr4 116221053 116221091 -39409029 + MERVL-int LTR ERVL 5448 5485 0 6 1471 4447 12 0 95 chr4 116221091 116221636 -39408484 + MT2_Mm LTR ERVL 1 493 0 6 1471 328 308 93 68 chr4 116221711 116221802 -39408318 - MLT1B LTR MaLR -66 324 238 6 1471 189 0 0 0 chr4 116221802 116221823 -39408297 + (GTCTG)n Simple_repeat Simple_repeat 4 24 0 6 1471 328 308 93 68 chr4 116221823 116222010 -39408110 - MLT1B LTR MaLR -153 237 39 6 1471 3203 46 18 0 chr4 116222494 116222887 -39407233 - MTB LTR MaLR 0 400 1 6 1471 396 0 0 0 chr4 116223025 116223069 -39407051 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1471 576 281 20 7 chr4 116223167 116223314 -39406806 - ID_B1 SINE B4 -75 149 1 6 1471 272 200 0 0 chr4 116223473 116223528 -39406592 - B1_Mur3 SINE Alu -21 128 74 6 1471 622 250 124 26 chr4 116223568 116223761 -39406359 - B3 SINE B2 -3 213 2 6 1471 629 265 0 0 chr4 116223947 116224083 -39406037 + B1_Mur2 SINE Alu 1 136 -13 6 1471 183 42 0 0 chr4 116224083 116224107 -39406013 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1471 1902 75 85 1 chr4 116224188 116224516 -39405604 - ORR1A4 LTR MaLR -8 386 5 6 1471 1722 21 0 0 chr4 116224723 116224913 -39405207 - B2_Mm1a SINE B2 -2 191 2 6 1471 284 139 0 0 chr4 116224927 116224970 -39405150 + PB1D9 SINE Alu 26 68 -52 6 1471 871 156 14 0 chr4 116224971 116225112 -39405008 - B1_Mur4 SINE Alu -7 143 1 6 1471 395 252 49 172 chr4 116225250 116225361 -39404759 + B3A SINE B2 9 110 -88 6 1471 1450 64 16 5 chr4 116225361 116225550 -39404570 + B2_Mm2 SINE B2 5 195 0 6 1471 395 252 49 172 chr4 116225550 116225601 -39404519 + B3A SINE B2 111 151 -47 6 1471 234 164 18 18 chr4 116226378 116226434 -39403686 + B3 SINE B2 158 213 -3 6 1471 1022 227 20 5 chr4 116226436 116226635 -39403485 + B3 SINE B2 1 202 -14 6 1471 266 308 83 46 chr4 116226874 116226983 -39403137 - B3A SINE B2 -38 160 48 6 1471 29 0 0 0 chr4 116226984 116227013 -39403107 + AT_rich Low_complexity Low_complexity 1 29 0 6 1471 1073 65 43 0 chr4 116227049 116227188 -39402932 - B1_Mus2 SINE Alu -2 145 1 6 1471 327 213 45 27 chr4 116227204 116227315 -39402805 + L2a LINE L2 3197 3309 -117 6 1471 1139 56 0 40 chr4 116227569 116227717 -39402403 + B1_Mus1 SINE Alu 2 143 -5 6 1471 180 0 0 0 chr4 116227723 116227743 -39402377 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1471 356 203 0 0 chr4 116228734 116228798 -39401322 - B3A SINE B2 -119 79 16 6 1471 21 0 0 0 chr4 116230087 116230108 -39400012 + GC_rich Low_complexity Low_complexity 1 21 0 6 1471 21 0 0 0 chr4 116230148 116230169 -39399951 + GC_rich Low_complexity Low_complexity 1 21 0 6 1471 306 73 0 0 chr4 116230780 116230821 -39399299 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 1471 391 204 173 1 chr4 116231563 116231693 -39398427 - B1_Mus2 SINE Alu 0 148 1 6 1471 189 0 0 0 chr4 116231856 116231877 -39398243 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 1471 921 218 29 15 chr4 116232087 116232292 -39397828 - B3 SINE B2 -3 213 6 6 1471 206 136 0 63 chr4 116232558 116232603 -39397517 + T-rich Low_complexity Low_complexity 18 59 0 6 1471 544 199 96 30 chr4 116232603 116232738 -39397382 - B1_Mus1 SINE Alu -4 144 1 6 1471 206 136 0 63 chr4 116232738 116232755 -39397365 + T-rich Low_complexity Low_complexity 1 17 0 6 1471 658 147 20 34 chr4 116232870 116233018 -39397102 - URR1A DNA MER1_type 0 226 81 6 1471 342 297 5 42 chr4 116233029 116233148 -39396972 - B1_Mur3 SINE Alu -32 117 1 6 1471 670 225 88 0 chr4 116233275 116233457 -39396663 - B3 SINE B2 -17 199 2 6 1471 532 212 59 0 chr4 116233472 116233590 -39396530 - B1_Mus1 SINE Alu -19 129 5 6 1471 492 18 0 0 chr4 116233593 116233650 -39396470 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1471 315 0 0 0 chr4 116233650 116233684 -39396436 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1471 814 136 129 0 chr4 116233686 116233826 -39396294 - B2_Mm2 SINE B2 -36 159 2 6 1471 337 281 73 33 chr4 116233949 116234291 -39395829 - RLTR15 LTR ERVK -18 341 34 6 1471 231 213 114 51 chr4 116234335 116234414 -39395706 - RLTR25A LTR ERVK -493 610 527 6 1471 539 226 9 9 chr4 116234348 116234464 -39395656 - B1_Mus2 SINE Alu -31 116 1 6 1471 299 311 23 78 chr4 116234464 116234491 -39395629 - MT2B LTR ERVL -446 155 136 6 1471 227 292 42 50 chr4 116234612 116234731 -39395389 - PB1D9 SINE Alu -2 118 1 6 1471 600 219 7 21 chr4 116234885 116235025 -39395095 - B1_Mur1 SINE Alu 0 149 12 6 1471 534 248 7 28 chr4 116235209 116235350 -39394770 + RSINE1 SINE B4 3 140 -25 6 1471 225 83 0 0 chr4 116235443 116235479 -39394641 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1471 216 86 0 0 chr4 116235485 116235520 -39394600 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1471 585 65 374 0 chr4 116235521 116235628 -39394492 - B1_Mus1 SINE Alu 0 148 2 6 1471 375 217 48 0 chr4 116236826 116236909 -39393211 - B3A SINE B2 -55 143 57 6 1471 227 75 0 24 chr4 116236961 116236987 -39393133 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 6 1471 1204 54 0 0 chr4 116236987 116237134 -39392986 - B1_Mus2 SINE Alu 0 147 1 6 1471 227 75 0 24 chr4 116237134 116237148 -39392972 + (TTTTA)n Simple_repeat Simple_repeat 3 16 0 6 1471 348 210 11 0 chr4 116237157 116237226 -39392894 - PB1D9 SINE Alu -42 75 2 6 1471 414 338 19 6 chr4 116237256 116237417 -39392703 - RSINE1 SINE B4 -2 163 1 6 1471 419 239 73 0 chr4 116237448 116237557 -39392563 + B3A SINE B2 2 118 -80 6 1471 251 220 40 0 chr4 116237550 116237600 -39392520 - ID SINE ID -165 59 8 6 1471 301 277 112 14 chr4 116237814 116237920 -39392200 - B1F SINE Alu 0 120 4 6 1471 357 248 18 54 chr4 116238144 116238255 -39391865 + ID_B1 SINE B4 92 198 -26 6 1471 580 276 51 11 chr4 116238259 116238435 -39391685 + B3A SINE B2 2 184 -14 6 1471 1247 27 7 0 chr4 116238454 116238600 -39391520 - B1_Mus2 SINE Alu 0 147 1 6 1471 252 333 19 10 chr4 116239084 116239187 -39390933 - RSINE1 SINE B4 -59 106 3 6 1471 1678 31 0 0 chr4 116239612 116239805 -39390315 + B2_Mm1a SINE B2 1 193 0 6 1471 846 173 200 6 chr4 116239811 116239991 -39390129 - B3 SINE B2 -1 215 1 6 1471 464 209 76 0 chr4 116240018 116240123 -39389997 - PB1D9 SINE Alu -6 114 2 6 1471 313 183 145 12 chr4 116240377 116240460 -39389660 - ORR1D2 LTR MaLR 0 370 277 6 1471 479 338 79 6 chr4 116240457 116240621 -39389499 + B3A SINE B2 7 182 -16 6 1471 1152 82 0 0 chr4 116240624 116240770 -39389350 - B1_Mus1 SINE Alu -2 146 1 6 1471 216 160 60 0 chr4 116240808 116240858 -39389262 - B1F1 SINE Alu -5 144 92 6 1471 312 115 0 71 chr4 116240940 116240996 -39389124 + B1_Mus1 SINE Alu 2 53 -95 6 1471 186 43 0 0 chr4 116242558 116242581 -39387539 + (CCCCCT)n Simple_repeat Simple_repeat 2 24 0 6 1471 629 201 170 6 chr4 116243045 116243210 -39386910 - URR1A DNA MER1_type -34 192 1 6 1471 774 238 18 41 chr4 116243805 116244024 -39386096 + B3 SINE B2 3 216 0 6 1471 1238 61 0 0 chr4 116244306 116244454 -39385666 + B1_Mus1 SINE Alu 1 148 0 6 1471 359 308 90 90 chr4 116244555 116244833 -39385287 + B4A SINE B4 5 282 -10 6 1471 310 250 0 0 chr4 116245090 116245154 -39384966 + B1F SINE Alu 9 72 -77 6 1471 1162 63 0 0 chr4 116245192 116245335 -39384785 - B1_Mm SINE Alu 0 147 5 7 1471 320 287 106 20 chr4 116245414 116245613 -39384507 - RLTR15 LTR ERVK -99 260 45 7 1471 246 197 167 0 chr4 116245694 116245760 -39384360 + B1F SINE Alu 73 149 0 6 1471 311 250 117 29 chr4 116245811 116245914 -39384206 - PB1D7 SINE Alu 0 120 9 7 1471 389 116 0 14 chr4 116246158 116246228 -39383892 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1471 198 0 0 0 chr4 116246228 116246249 -39383871 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1471 1172 22 7 0 chr4 116246252 116246391 -39383729 - B1_Mm SINE Alu -6 141 2 7 1471 412 269 56 21 chr4 116246423 116246567 -39383553 + B1_Mur2 SINE Alu 1 149 0 7 1471 398 257 73 9 chr4 116247297 116247407 -39382713 - PB1D9 SINE Alu -3 117 1 7 1471 431 329 56 37 chr4 116247557 116247718 -39382402 - RSINE1 SINE B4 0 165 2 7 1471 1022 58 174 7 chr4 116247745 116247900 -39382220 + B2_Mm2 SINE B2 1 181 -14 7 1471 21 0 0 0 chr4 116247900 116247921 -39382199 + AT_rich Low_complexity Low_complexity 1 21 0 7 1471 271 255 108 45 chr4 116248071 116248182 -39381938 - RLTR20A1 LTR ERVK -349 202 85 7 1471 960 254 5 5 chr4 116248734 116248944 -39381176 + B3 SINE B2 2 211 -5 7 1471 340 296 31 0 chr4 116249251 116249349 -39380771 + RSINE1 SINE B4 34 134 -31 7 1471 621 204 51 38 chr4 116249407 116249565 -39380555 + B3A SINE B2 3 162 -36 7 1471 559 189 80 43 chr4 116249590 116249728 -39380392 + B1_Mus2 SINE Alu 5 147 0 7 1471 319 329 71 19 chr4 116249863 116250018 -39380102 - RSINE1 SINE B4 0 165 3 7 1471 643 136 246 0 chr4 116250065 116250183 -39379937 + B1_Mus1 SINE Alu 2 148 0 7 1471 189 0 0 0 chr4 116250183 116250204 -39379916 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 7 1471 379 304 70 0 chr4 116250250 116250378 -39379742 + B3A SINE B2 74 208 -8 7 1471 1206 103 43 0 chr4 116250378 116250562 -39379558 + B2_Mm2 SINE B2 4 195 0 7 1471 376 307 9 0 chr4 116250700 116250814 -39379306 - PB1D9 SINE Alu -1 119 5 7 1471 183 42 0 0 chr4 116250884 116250908 -39379212 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1471 1047 83 7 0 chr4 116250908 116251043 -39379077 - B1_Mus2 SINE Alu -10 137 2 7 1471 231 61 0 0 chr4 116251981 116252014 -39378106 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1471 1092 61 0 58 chr4 116252110 116252266 -39377854 + B1_Mus2 SINE Alu 1 147 0 7 1471 446 244 31 70 chr4 116252808 116252936 -39377184 + B1_Mur1 SINE Alu 27 149 0 7 1471 900 230 102 0 chr4 116252946 116253133 -39376987 + B3 SINE B2 1 206 -10 7 1471 21 0 0 0 chr4 116253137 116253158 -39376962 + AT_rich Low_complexity Low_complexity 1 21 0 7 1471 1170 61 0 7 chr4 116253445 116253593 -39376527 - B1_Mus2 SINE Alu 0 147 1 7 1471 1154 68 0 0 chr4 116254084 116254231 -39375889 + B1_Mus2 SINE Alu 1 147 0 7 1471 278 294 43 21 chr4 116254586 116254680 -39375440 + 7SLRNA srpRNA srpRNA 12 107 -207 7 1471 407 240 125 49 chr4 116254936 116255120 -39375000 - B3A SINE B2 0 198 1 7 1471 1129 82 7 0 chr4 116255184 116255330 -39374790 - B1_Mus1 SINE Alu 0 148 2 7 1471 957 32 0 0 chr4 116255669 116255792 -39374328 - B1_Mm SINE Alu 0 147 25 7 1471 299 184 0 0 chr4 116256561 116256610 -39373510 + PB1D10 SINE Alu 52 100 -17 7 1471 1071 96 81 43 chr4 116257038 116257223 -39372897 - B2_Mm2 SINE B2 0 195 4 7 1471 452 293 12 68 chr4 116257285 116257446 -39372674 - RSINE1 SINE B4 -1 164 13 7 1471 899 225 30 5 chr4 116257541 116257742 -39372378 + B3 SINE B2 1 206 -10 7 1471 1150 62 0 7 chr4 116257998 116258145 -39371975 + B1_Mm SINE Alu 2 147 0 7 1471 186 118 0 0 chr4 116258633 116258667 -39371453 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1471 265 142 35 0 chr4 116258757 116258806 -39371314 + B1F SINE Alu 83 137 -12 7 1471 1123 58 0 0 chr4 116259009 116259147 -39370973 + B1_Mus1 SINE Alu 5 142 -6 7 1471 428 205 155 54 chr4 116259314 116259443 -39370677 - B1_Mur3 SINE Alu -6 143 2 7 1471 361 299 69 38 chr4 116260156 116260316 -39369804 - ID_B1 SINE B4 -49 175 11 7 1471 693 287 20 0 chr4 116260356 116260558 -39369562 - B3 SINE B2 -9 207 2 7 1471 217 354 62 0 chr4 116260613 116260709 -39369411 + PB1D10 SINE Alu 1 102 -15 7 1471 285 29 0 0 chr4 116260714 116260748 -39369372 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1472 394 242 77 0 chr4 116261031 116261122 -39368998 - B3 SINE B2 -93 123 26 7 1472 27 0 0 0 chr4 116261381 116261408 -39368712 + AT_rich Low_complexity Low_complexity 1 27 0 7 1472 305 273 0 0 chr4 116261462 116261528 -39368592 - RSINE1 SINE B4 -96 69 4 7 1472 537 16 0 0 chr4 116261549 116261611 -39368509 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1472 185 0 40 0 chr4 116261616 116261641 -39368479 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1472 415 217 171 17 chr4 116261641 116261758 -39368362 - B1_Mur2 SINE Alu -10 139 5 7 1472 281 264 66 0 chr4 116262033 116262154 -39367966 - L1MC LINE L1 -820 5326 5198 7 1472 912 91 83 8 chr4 116262206 116262339 -39367781 - B1_Mus2 SINE Alu -4 143 1 7 1472 226 227 0 0 chr4 116262345 116262410 -39367710 - B4A SINE B4 -72 152 88 7 1472 993 160 37 55 chr4 116263204 116263422 -39366698 - URR1A DNA MER1_type -11 215 2 7 1472 384 302 52 0 chr4 116264141 116264257 -39365863 - B1F2 SINE Alu -12 137 16 7 1472 973 60 90 0 chr4 116264650 116264784 -39365336 + B1_Mus1 SINE Alu 2 147 -1 7 1472 853 148 0 21 chr4 116264889 116265034 -39365086 + B1_Mus1 SINE Alu 1 142 -6 7 1472 435 259 89 0 chr4 116265143 116265278 -39364842 + B1_Mus1 SINE Alu 2 148 0 7 1472 375 119 0 0 chr4 116266025 116266092 -39364028 + (T)n Simple_repeat Simple_repeat 1 67 0 7 1472 309 240 29 20 chr4 116266570 116266672 -39363448 - B3 SINE B2 -5 211 109 7 1472 261 321 62 55 chr4 116266820 116266965 -39363155 + RSINE1 SINE B4 14 159 -6 7 1472 246 146 0 20 chr4 116266976 116267025 -39363095 + B3A SINE B2 2 49 -149 7 1472 417 311 0 0 chr4 116267052 116267155 -39362965 + RSINE1 SINE B4 3 105 -60 7 1472 421 158 61 31 chr4 116267732 116267830 -39362290 + RMER6D LTR ERVK 1 101 -619 7 1472 1246 140 38 21 chr4 116267875 116268249 -39361871 - RMER16 LTR ERVK -34 499 1 7 1472 1423 39 78 0 chr4 116268300 116268479 -39361641 + B2_Mm1t SINE B2 1 193 0 7 1472 692 159 118 25 chr4 116268545 116268706 -39361414 + RMER6A LTR ERVK 472 647 -109 7 1472 1090 39 0 15 chr4 116273341 116273463 -39356657 + B1_Mus1 SINE Alu 3 124 -24 7 1472 232 48 23 23 chr4 116273463 116273506 -39356614 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 7 1472 1043 122 0 0 chr4 116275611 116275759 -39354361 - B1_Mus1 SINE Alu 0 148 1 7 1472 1471 49 43 0 chr4 116276293 116276477 -39353643 + B2_Mm1t SINE B2 2 193 0 7 1472 257 163 76 19 chr4 116277029 116277104 -39353016 - B1_Mur1 SINE Alu -9 140 25 7 1472 1047 71 28 0 chr4 116277685 116277826 -39352294 - B1_Mus1 SINE Alu -1 147 3 7 1472 22 0 0 0 chr4 116277845 116277867 -39352253 + AT_rich Low_complexity Low_complexity 1 22 0 7 1472 1066 86 0 0 chr4 116277877 116278016 -39352104 + B1_Mus2 SINE Alu 2 140 -7 7 1472 184 30 61 0 chr4 116278016 116278049 -39352071 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 1472 294 217 181 0 chr4 116279301 116279384 -39350736 - B1_Mm SINE Alu -18 129 32 7 1472 531 179 75 0 chr4 116279599 116279705 -39350415 - B4A SINE B4 -7 285 172 7 1472 1009 146 39 11 chr4 116279809 116279989 -39350131 + B2_Mm2 SINE B2 2 186 -9 7 1472 667 249 41 29 chr4 116280010 116280180 -39349940 - B3A SINE B2 -26 172 1 7 1472 1139 51 0 0 chr4 116280333 116280471 -39349649 + B1_Mm SINE Alu 1 138 -9 7 1472 254 200 9 159 chr4 116280498 116280605 -39349515 + MT2B LTR ERVL 159 249 -352 7 1472 629 227 14 47 chr4 116280512 116280660 -39349460 + B1_Mur4 SINE Alu 7 149 -1 7 1472 247 146 40 40 chr4 116281210 116281260 -39348860 + B1F SINE Alu 99 148 -1 7 1472 228 214 33 82 chr4 116281747 116281808 -39348312 - B4 SINE B4 -208 84 27 7 1472 339 293 0 0 chr4 116281990 116282072 -39348048 + ID4_ SINE ID 2 83 0 7 1472 229 224 0 0 chr4 116284814 116284863 -39345257 + B1_Mur1 SINE Alu 95 143 -6 7 1472 389 229 73 9 chr4 116284895 116285005 -39345115 + B3A SINE B2 9 125 -73 7 1472 559 178 36 8 chr4 116285060 116285194 -39344926 - B1_Mur3 SINE Alu 0 149 1 7 1472 375 250 23 0 chr4 116285259 116285347 -39344773 + PB1D9 SINE Alu 12 101 -19 7 1472 501 204 180 31 chr4 116285347 116285597 -39344523 + ORR1D1 LTR MaLR 1 336 -38 7 1472 184 30 61 0 chr4 116285617 116285650 -39344470 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1472 261 282 137 29 chr4 116285695 116285870 -39344250 + Lx8 LINE L1 6915 7108 -365 7 1472 32 43 0 0 chr4 116286282 116286328 -39343792 + AT_rich Low_complexity Low_complexity 1 46 0 7 1472 1109 67 0 0 chr4 116286396 116286530 -39343590 + B1_Mus1 SINE Alu 4 137 -11 7 1472 461 262 2 48 chr4 116287207 116287231 -39342889 + ID_B1 SINE B4 74 217 -75 7 1472 838 102 0 8 chr4 116287231 116287360 -39342760 + B1_Mus1 SINE Alu 13 140 -8 7 1472 213 39 0 0 chr4 116287360 116287386 -39342734 + (CGAA)n Simple_repeat Simple_repeat 3 28 0 8 1472 312 317 32 97 chr4 116287386 116287417 -39342703 + B4A SINE B4 218 246 -46 7 1472 633 188 0 20 chr4 116287422 116287474 -39342646 + A-rich Low_complexity Low_complexity 3 54 0 8 1472 1137 81 23 0 chr4 116287474 116287648 -39342472 + (GGAAA)n Simple_repeat Simple_repeat 2 179 0 8 1472 633 188 0 20 chr4 116287648 116287747 -39342373 + A-rich Low_complexity Low_complexity 55 151 0 8 1472 557 218 258 45 chr4 116287833 116288011 -39342109 - B3 SINE B2 0 216 1 8 1472 285 279 82 37 chr4 116288166 116288184 -39341936 + B4 SINE B4 80 219 -73 8 1472 410 190 172 0 chr4 116288184 116288300 -39341820 + B1_Mur4 SINE Alu 8 143 -7 8 1472 234 0 0 0 chr4 116288301 116288327 -39341793 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 1472 587 206 47 47 chr4 116288354 116288502 -39341618 + B1_Mus1 SINE Alu 1 148 0 8 1472 754 156 16 0 chr4 116288853 116288981 -39341139 + B3 SINE B2 1 130 -86 8 1472 219 276 112 146 chr4 116288981 116289086 -39341034 + B4 SINE B4 1 225 -67 8 1472 486 120 0 0 chr4 116289012 116289087 -39341033 + B1_Mur4 SINE Alu 76 150 0 8 1472 648 93 254 0 chr4 116289105 116289223 -39340897 - B1_Mus1 SINE Alu 0 148 1 8 1472 226 196 78 0 chr4 116289259 116289310 -39340810 + ID4 SINE ID 6 60 -23 8 1472 495 230 74 0 chr4 116289412 116289547 -39340573 + B3 SINE B2 72 216 0 8 1472 536 219 73 49 chr4 116289614 116289944 -39340176 + MTD LTR MaLR 4 398 -21 8 1472 1251 115 27 0 chr4 116290076 116290259 -39339861 + B2_Mm1a SINE B2 2 189 -4 8 1472 426 287 51 60 chr4 116290543 116290758 -39339362 + B3 SINE B2 4 216 0 8 1472 1207 49 0 0 chr4 116290769 116290912 -39339208 + B1_Mus2 SINE Alu 1 143 -4 8 1472 221 53 53 0 chr4 116290914 116290952 -39339168 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 1472 379 195 257 0 chr4 116291037 116291150 -39338970 - B1_Mus1 SINE Alu -6 142 1 8 1472 1213 34 0 33 chr4 116291682 116291834 -39338286 + B1_Mm SINE Alu 1 147 0 8 1472 1116 53 138 35 chr4 116292004 116292178 -39337942 + B2_Mm1a SINE B2 2 193 0 8 1472 236 411 19 9 chr4 116292344 116292452 -39337668 + ID_B1 SINE B4 30 138 -86 8 1472 1109 89 7 0 chr4 116292525 116292671 -39337449 + B1_Mus1 SINE Alu 2 148 0 8 1472 186 43 0 0 chr4 116292710 116292733 -39337387 + (CACG)n Simple_repeat Simple_repeat 2 24 0 8 1472 245 213 16 0 chr4 116292736 116292797 -39337323 + PB1D9 SINE Alu 59 120 0 8 1472 642 314 25 30 chr4 116292808 116293008 -39337112 + ID_B1 SINE B4 9 207 -17 8 1472 488 222 92 25 chr4 116293039 116293159 -39336961 + B1_Mur3 SINE Alu 1 128 -21 8 1472 328 301 81 0 chr4 116293162 116293298 -39336822 + B4 SINE B4 1 147 -145 8 1472 25 0 0 0 chr4 116293455 116293480 -39336640 + AT_rich Low_complexity Low_complexity 1 25 0 8 1472 213 288 17 17 chr4 116293480 116293540 -39336580 + B4 SINE B4 81 140 -152 8 1472 382 189 214 9 chr4 116293492 116293604 -39336516 + B1_Mur1 SINE Alu 7 141 -8 8 1472 527 227 158 34 chr4 116293671 116293817 -39336303 + B3 SINE B2 51 214 -2 8 1472 260 263 87 39 chr4 116294361 116294464 -39335656 + MTD LTR MaLR 4 111 -308 8 1472 236 286 43 0 chr4 116294697 116294767 -39335353 - ID4_ SINE ID 0 83 11 8 1472 348 217 115 16 chr4 116294770 116294892 -39335228 - Charlie1a DNA MER1_type -804 651 518 8 1472 1090 82 0 20 chr4 116295016 116295166 -39334954 + B1_Mus1 SINE Alu 2 148 0 8 1472 847 125 15 7 chr4 116295544 116295681 -39334439 + B1_Mus2 SINE Alu 10 147 0 8 1472 319 252 51 59 chr4 116295696 116295709 -39334411 + B4A SINE B4 78 89 -203 8 1472 829 95 0 16 chr4 116295709 116295837 -39334283 + B1_Mus1 SINE Alu 2 127 -21 8 1472 573 304 39 0 chr4 116295957 116296161 -39333959 + B3 SINE B2 1 212 -4 8 1472 669 173 104 15 chr4 116296185 116296320 -39333800 + B1_Mus1 SINE Alu 1 147 -1 8 1472 1657 26 0 20 chr4 116296324 116296521 -39333599 + B2_Mm1a SINE B2 1 193 0 8 1472 1009 158 16 26 chr4 116296612 116296801 -39333319 + B2_Mm2 SINE B2 2 188 -7 8 1472 680 132 9 9 chr4 116297276 116297391 -39332729 - B1_Mus1 SINE Alu -32 116 2 8 1472 455 223 214 13 chr4 116297443 116297602 -39332518 + B3A SINE B2 4 194 -4 8 1472 1121 69 0 7 chr4 116297605 116297751 -39332369 + B1_Mm SINE Alu 1 145 -2 8 1472 23 0 0 0 chr4 116297881 116297904 -39332216 + AT_rich Low_complexity Low_complexity 1 23 0 8 1472 1090 123 53 0 chr4 116297908 116298078 -39332042 + B2_Mm1t SINE B2 1 179 -14 8 1472 322 225 114 24 chr4 116298125 116298248 -39331872 + B2_Mm2 SINE B2 47 180 -15 8 1472 1076 82 0 20 chr4 116298258 116298408 -39331712 + B1_Mus1 SINE Alu 2 148 0 8 1472 282 188 0 0 chr4 116298424 116298481 -39331639 + B1_Mus1 SINE Alu 2 59 -89 8 1472 216 0 0 0 chr4 116299498 116299522 -39330598 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1472 208 104 62 0 chr4 116300275 116300323 -39329797 + GA-rich Low_complexity Low_complexity 2 52 0 8 1472 274 270 20 99 chr4 116300837 116300989 -39329131 - ID_B1 SINE B4 0 224 85 8 1472 519 246 15 0 chr4 116300858 116300992 -39329128 - B1_Mur1 SINE Alu -13 136 1 8 1472 530 234 20 46 chr4 116300992 116301127 -39328993 + B3 SINE B2 86 216 0 8 1472 593 229 259 0 chr4 116301130 116301300 -39328820 + B3 SINE B2 3 216 0 8 1472 1637 37 0 0 chr4 116301361 116301549 -39328571 + B2_Mm1a SINE B2 1 188 -5 8 1472 477 178 469 7 chr4 116301585 116301732 -39328388 - B3 SINE B2 0 216 2 8 1472 419 228 65 0 chr4 116301732 116301824 -39328296 + B1_Mur3 SINE Alu 13 110 -39 8 1472 404 230 177 0 chr4 116301822 116301935 -39328185 + B1_Mur2 SINE Alu 17 149 0 8 1472 739 73 184 8 chr4 116301943 116302068 -39328052 + B1_Mus1 SINE Alu 2 148 0 8 1472 543 281 23 0 chr4 116302161 116302289 -39327831 - B3A SINE B2 -64 134 4 8 1472 341 257 0 38 chr4 116302396 116302407 -39327713 + MT2B LTR ERVL 155 161 -440 8 1472 498 186 62 0 chr4 116302407 116302503 -39327617 + B1_Mus1 SINE Alu 2 103 -45 8 1472 1271 25 0 0 chr4 116302503 116302663 -39327457 + B2_Mm1a SINE B2 1 160 -33 8 1472 276 53 0 0 chr4 116302663 116302701 -39327419 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 8 1472 313 86 17 17 chr4 116302703 116302762 -39327358 + B1_Mur3 SINE Alu 91 149 0 8 1472 521 110 0 11 chr4 116302791 116302883 -39327237 - B2_Mm2 SINE B2 -7 188 98 8 1472 1664 36 0 0 chr4 116302883 116303075 -39327045 + B2_Mm1a SINE B2 2 193 0 8 1472 259 318 47 0 chr4 116303089 116303174 -39326946 + RSINE1 SINE B4 42 130 -35 8 1472 290 257 27 0 chr4 116303276 116303350 -39326770 + ID4_ SINE ID 8 83 0 8 1472 463 202 39 0 chr4 116303520 116303624 -39326496 + B1F1 SINE Alu 22 129 -20 8 1472 205 138 0 0 chr4 116303629 116303658 -39326462 + (AGGGGG)n Simple_repeat Simple_repeat 1 29 0 8 1472 1574 232 25 78 chr4 116303749 116303787 -39326333 + MTD LTR MaLR 1 35 -384 8 1472 3222 146 78 19 chr4 116303787 116304361 -39325759 + RMER19C LTR ERVK 4 611 0 8 1472 1574 232 25 78 chr4 116304361 116304431 -39325689 + MTD LTR MaLR 36 98 -321 8 1472 1051 60 30 0 chr4 116304431 116304564 -39325556 + B1_Mus2 SINE Alu 1 137 -10 8 1472 243 0 0 0 chr4 116304564 116304591 -39325529 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1472 1574 232 25 78 chr4 116304591 116304914 -39325206 + MTD LTR MaLR 99 410 -9 8 1472 390 254 153 84 chr4 116304931 116305001 -39325119 + ORR1E LTR MaLR 41 135 -224 8 1472 2872 38 21 3 chr4 116305001 116305341 -39324779 - ORR1A1 LTR MaLR 0 346 1 8 1472 390 254 153 84 chr4 116305341 116305485 -39324635 + ORR1E LTR MaLR 136 270 -89 8 1472 1230 54 0 0 chr4 116305577 116305724 -39324396 + B1_Mm SINE Alu 1 147 0 8 1472 441 280 96 36 chr4 116305738 116305957 -39324163 - RLTR15 LTR ERVK -80 279 48 8 1472 327 242 146 32 chr4 116305944 116306102 -39324018 - RLTR12B LTR ERVK -339 189 14 8 1472 1475 216 56 19 chr4 116306164 116306523 -39323597 + ORR1D1 LTR MaLR 1 372 -2 8 1472 708 183 35 0 chr4 116306588 116306730 -39323390 + B1_Mus1 SINE Alu 2 148 0 8 1472 1370 75 5 21 chr4 116306769 116306959 -39323161 + B2_Mm1a SINE B2 1 187 -6 8 1472 490 174 61 0 chr4 116306974 116307072 -39323048 - PB1D9 SINE Alu -1 119 16 8 1472 366 301 86 22 chr4 116307079 116307218 -39322902 - RSINE1 SINE B4 -5 160 13 8 1472 431 286 213 18 chr4 116307228 116307392 -39322728 - B3A SINE B2 -1 197 2 8 1472 654 279 38 19 chr4 116307422 116307634 -39322486 - ID_B1 SINE B4 -7 217 2 8 1472 998 116 0 26 chr4 116308342 116308493 -39321627 - B1_Mus2 SINE Alu 0 147 1 8 1472 1181 54 0 0 chr4 116308502 116308650 -39321470 - B1_Mus1 SINE Alu 0 148 1 8 1472 1311 98 5 16 chr4 116308662 116308849 -39321271 - B2_Mm1a SINE B2 -6 187 3 8 1472 259 258 39 58 chr4 116309744 116309847 -39320273 + B1F SINE Alu 49 149 0 8 1472 1104 59 0 0 chr4 116309852 116309988 -39320132 + B1_Mus1 SINE Alu 1 136 -12 8 1472 207 0 0 0 chr4 116309989 116310012 -39320108 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1472 515 197 25 25 chr4 116310017 116310137 -39319983 + PB1D9 SINE Alu 1 120 0 8 1472 214 220 68 0 chr4 116310858 116310917 -39319203 + B1_Mur1 SINE Alu 45 107 -42 8 1472 273 196 0 0 chr4 116310917 116310973 -39319147 + CT-rich Low_complexity Low_complexity 1 56 0 9 1472 312 94 0 0 chr4 116310974 116311027 -39319093 + (TATG)n Simple_repeat Simple_repeat 4 56 0 9 1472 607 131 131 0 chr4 116311027 116311126 -39318994 - PB1D9 SINE Alu -7 113 2 9 1472 1374 95 11 0 chr4 116311128 116311317 -39318803 - B2_Mm1t SINE B2 -2 191 1 9 1472 1106 95 0 0 chr4 116311389 116311537 -39318583 + B1_Mus1 SINE Alu 1 148 0 9 1472 27 49 0 0 chr4 116311923 116311964 -39318156 + AT_rich Low_complexity Low_complexity 1 41 0 9 1472 1445 43 60 0 chr4 116312771 116312955 -39317165 + B2_Mm2 SINE B2 1 195 0 9 1472 207 0 0 0 chr4 116313025 116313048 -39317072 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 1472 631 235 76 0 chr4 116313053 116313185 -39316935 - B1_Mus2 SINE Alu 0 147 6 9 1472 364 254 140 53 chr4 116313914 116314064 -39316056 - B3A SINE B2 -34 164 2 9 1472 752 227 14 0 chr4 116314064 116314205 -39315915 - B1_Mur4 SINE Alu -5 145 3 9 1472 530 246 84 7 chr4 116314703 116314846 -39315274 + ID_B1 SINE B4 3 156 -68 9 1472 1047 118 38 38 chr4 116314850 116315035 -39315085 + B2_Mm2 SINE B2 5 189 -6 9 1472 204 200 0 0 chr4 116315047 116315097 -39315023 + GA-rich Low_complexity Low_complexity 3 52 0 9 1472 694 259 96 10 chr4 116315239 116315438 -39314682 - B3 SINE B2 0 216 1 9 1472 452 278 0 42 chr4 116315575 116315695 -39314425 + B1F1 SINE Alu 26 140 -9 9 1472 638 351 14 9 chr4 116315709 116315919 -39314201 + ID_B1 SINE B4 4 214 -10 9 1472 375 218 180 9 chr4 116316320 116316431 -39313689 - B1F SINE Alu -7 142 13 9 1472 1434 37 0 11 chr4 116316481 116316672 -39313448 - B2_Mm1a SINE B2 -3 190 2 9 1472 1087 36 0 0 chr4 116316680 116316819 -39313301 - B1_Mus2 SINE Alu 0 147 9 9 1472 413 178 17 108 chr4 116316715 116316835 -39313285 - MT2B LTR ERVL -337 264 156 9 1472 530 294 69 23 chr4 116317052 116317226 -39312894 + B3A SINE B2 1 182 -16 9 1472 312 261 11 21 chr4 116317306 116317400 -39312720 + PB1D10 SINE Alu 25 117 0 9 1472 1103 130 16 21 chr4 116317484 116317673 -39312447 + B2_Mm2 SINE B2 1 188 -7 9 1472 429 288 50 50 chr4 116318472 116318633 -39311487 + ID_B1 SINE B4 1 161 -63 9 1472 397 217 24 0 chr4 116318655 116318738 -39311382 + PB1D9 SINE Alu 29 113 -7 9 1472 221 233 0 0 chr4 116318743 116318781 -39311339 + A-rich Low_complexity Low_complexity 1 38 0 9 1472 1074 89 7 0 chr4 116318781 116318927 -39311193 + B1_Mus1 SINE Alu 2 148 0 9 1472 221 233 0 0 chr4 116318927 116318948 -39311172 + A-rich Low_complexity Low_complexity 39 59 0 9 1472 1134 157 178 30 chr4 116319197 116319467 -39310653 + RLTR24 LTR ERV1 220 529 0 9 1472 861 158 0 7 chr4 116320645 116320785 -39309335 + B1_Mus1 SINE Alu 1 139 -9 9 1472 1120 89 0 14 chr4 116320884 116321032 -39309088 + B1_Mus1 SINE Alu 2 147 -1 9 1472 1270 92 40 6 chr4 116321113 116321288 -39308832 + B2_Mm2 SINE B2 1 181 -14 9 1472 1103 92 0 0 chr4 116321310 116321451 -39308669 - B1_Mm SINE Alu -6 141 1 9 1472 308 219 68 0 chr4 116321529 116321602 -39308518 + PB1D9 SINE Alu 1 78 -42 9 1472 890 141 49 0 chr4 116321809 116321951 -39308169 + B1_Mur3 SINE Alu 1 149 0 9 1472 225 0 0 0 chr4 116322381 116322406 -39307714 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1472 1279 40 0 0 chr4 116322462 116322610 -39307510 + B1_Mus1 SINE Alu 1 148 0 9 1472 182 62 31 0 chr4 116322610 116322642 -39307478 + (CAA)n Simple_repeat Simple_repeat 1 33 0 9 1472 493 259 30 0 chr4 116322757 116322888 -39307232 - ID_B1 SINE B4 -3 221 87 9 1472 447 227 0 10 chr4 116323156 116323254 -39306866 + B3 SINE B2 100 196 -20 9 1472 664 241 101 39 chr4 116324550 116324757 -39305363 + ID_B1 SINE B4 2 221 -3 9 1472 626 233 8 0 chr4 116324780 116324900 -39305220 + B3A SINE B2 36 156 -42 9 1472 471 297 117 35 chr4 116324919 116325149 -39304971 - RLTR19 LTR ERVK -142 357 106 9 1472 258 32 0 0 chr4 116325149 116325180 -39304940 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1472 471 297 117 35 chr4 116325180 116325266 -39304854 - RLTR19 LTR ERVK -394 105 16 9 1472 589 182 45 9 chr4 116325315 116325426 -39304694 - B1_Mur2 SINE Alu -20 129 15 9 1472 22 0 0 0 chr4 116325444 116325466 -39304654 + AT_rich Low_complexity Low_complexity 1 22 0 9 1472 554 191 26 9 chr4 116325466 116325582 -39304538 + PB1D9 SINE Alu 3 120 0 9 1472 234 244 101 13 chr4 116325589 116325668 -39304452 - B3 SINE B2 0 216 131 9 1472 360 111 0 0 chr4 116326318 116326372 -39303748 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 1472 499 231 83 15 chr4 116326632 116326764 -39303356 + B1F SINE Alu 1 141 -8 9 1472 2543 177 54 90 chr4 116326860 116327080 -39303040 - RLTR18 LTR ERVK -4 612 406 9 1472 1175 41 7 20 chr4 116327080 116327229 -39302891 + B1_Mm SINE Alu 1 147 0 9 1472 2543 177 54 90 chr4 116327229 116327264 -39302856 - RLTR18 LTR ERVK -211 405 385 9 1472 1098 99 0 0 chr4 116327264 116327406 -39302714 + B1_Mus1 SINE Alu 1 142 -6 9 1472 2543 177 54 90 chr4 116327406 116327781 -39302339 - RLTR18 LTR ERVK -232 384 4 9 1472 508 254 0 30 chr4 116328076 116328210 -39301910 + ID_B1 SINE B4 83 212 -12 9 1472 392 0 21 0 chr4 116328210 116328258 -39301862 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 9 1472 1393 233 42 25 chr4 116328307 116328457 -39301663 - MTD LTR MaLR -11 408 258 9 1472 2246 147 111 56 chr4 116328457 116328954 -39301166 + RLTR28 LTR ERVL 1 524 0 9 1472 1393 233 42 25 chr4 116328954 116329204 -39300916 - MTD LTR MaLR -162 257 1 9 1472 628 147 133 33 chr4 116330228 116330348 -39299772 + B1_Mus1 SINE Alu 3 134 -14 9 1472 258 32 0 0 chr4 116330349 116330380 -39299740 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 9 1472 1015 104 12 6 chr4 116330381 116330545 -39299575 + (GAAAA)n Simple_repeat Simple_repeat 3 167 0 9 1472 553 267 123 12 chr4 116331168 116331331 -39298789 + RLTR12B LTR ERVK 10 190 -378 9 1472 1372 84 0 64 chr4 116331331 116331501 -39298619 + B2_Mm2 SINE B2 3 169 -26 9 1472 261 0 0 0 chr4 116331501 116331530 -39298590 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1472 1177 36 0 7 chr4 116331533 116331674 -39298446 - B1_Mm SINE Alu -6 141 2 9 1472 1372 84 0 64 chr4 116331674 116331703 -39298417 + B2_Mm2 SINE B2 170 193 -2 9 1472 553 302 133 26 chr4 116331703 116331935 -39298185 + RLTR12B LTR ERVK 191 458 -70 9 1472 541 297 0 0 chr4 116332333 116332471 -39297649 + RSINE1 SINE B4 28 165 0 9 1472 255 74 74 0 chr4 116332494 116332548 -39297572 - B2_Mm1t SINE B2 0 193 136 9 1472 325 205 35 24 chr4 116332526 116332611 -39297509 + B1_Mur3 SINE Alu 64 149 0 9 1472 1188 70 133 12 chr4 116332616 116332789 -39297331 + B2_Mm2 SINE B2 2 195 0 9 1472 1177 68 0 0 chr4 116332790 116332936 -39297184 + B1_Mus2 SINE Alu 2 147 0 9 1472 538 200 136 0 chr4 116332950 116333090 -39297030 + B2_Mm2 SINE B2 27 185 -10 9 1472 24 32 0 0 chr4 116333090 116333121 -39296999 + AT_rich Low_complexity Low_complexity 1 31 0 9 1472 320 231 12 93 chr4 116333129 116333215 -39296905 + RSINE1 SINE B4 46 124 -41 9 1472 333 68 0 0 chr4 116333218 116333262 -39296858 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1472 539 36 11 67 chr4 116333322 116333411 -39296709 + B1_Mm SINE Alu 43 126 -21 9 1472 638 195 8 8 chr4 116333825 116333954 -39296166 + B1_Mur1 SINE Alu 20 148 -1 9 1472 297 0 0 0 chr4 116333999 116334032 -39296088 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1472 227 310 15 114 chr4 116334068 116334199 -39295921 - RSINE1 SINE B4 0 165 48 9 1472 1216 68 0 0 chr4 116334273 116334421 -39295699 - B1_Mus1 SINE Alu 0 148 1 9 1472 816 183 0 0 chr4 116334454 116334596 -39295524 - B1_Mur3 SINE Alu -7 142 1 9 1472 534 182 38 45 chr4 116334599 116334731 -39295389 - B1_Mur4 SINE Alu 0 150 20 9 1472 24 0 0 0 chr4 116334749 116334773 -39295347 + AT_rich Low_complexity Low_complexity 1 24 0 9 1472 976 96 14 0 chr4 116334780 116334926 -39295194 - B2_Mm2 SINE B2 -31 164 17 9 1472 745 211 0 13 chr4 116334929 116335078 -39295042 - B1_Mur4 SINE Alu -3 147 1 9 1472 285 276 34 11 chr4 116335139 116335227 -39294893 - RSINE1 SINE B4 -59 106 17 9 1472 541 255 13 46 chr4 116335554 116335706 -39294414 + RSINE1 SINE B4 6 152 -13 9 1472 26 0 0 49 chr4 116335733 116335753 -39294367 + AT_rich Low_complexity Low_complexity 1 20 0 9 1472 1247 48 0 0 chr4 116335753 116335900 -39294220 - B1_Mm SINE Alu 0 147 1 9 1472 26 0 0 49 chr4 116335900 116335920 -39294200 + AT_rich Low_complexity Low_complexity 1 19 0 9 1472 1634 57 0 0 chr4 116335944 116336137 -39293983 + B2_Mm1t SINE B2 1 193 0 9 1472 1180 91 16 33 chr4 116336149 116336331 -39293789 + B2_Mm2 SINE B2 3 181 -14 9 1472 180 0 0 0 chr4 116336331 116336351 -39293769 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1472 774 161 18 7 chr4 116336370 116336534 -39293586 + B3 SINE B2 1 172 -23 9 1472 1089 85 0 0 chr4 116336742 116336883 -39293237 - B1_Mm SINE Alu -5 142 2 9 1472 263 304 0 14 chr4 116336966 116337036 -39293084 - B4A SINE B4 -4 288 220 9 1472 1261 93 21 27 chr4 116337107 116337294 -39292826 - B2_Mm2 SINE B2 -9 186 1 9 1472 477 214 0 176 chr4 116337298 116337474 -39292646 - B1_Mur2 SINE Alu -2 147 3 9 1472 333 274 59 0 chr4 116337480 116337582 -39292538 - PB1D9 SINE Alu -1 119 12 9 1472 1179 68 0 13 chr4 116337839 116337989 -39292131 + B1_Mus1 SINE Alu 1 148 0 9 1472 496 169 0 0 chr4 116338129 116338218 -39291902 + B3 SINE B2 33 121 -95 9 1472 933 164 0 7 chr4 116338339 116338486 -39291634 + B1_Mus1 SINE Alu 2 147 -1 1 1472 1207 41 7 0 chr4 116338608 116338754 -39291366 + B1_Mm SINE Alu 1 147 0 1 1472 1654 21 0 11 chr4 116338972 116339160 -39290960 - B2_Mm1a SINE B2 -6 187 2 1 1472 33 0 0 0 chr4 116339163 116339196 -39290924 + AT_rich Low_complexity Low_complexity 1 33 0 1 1472 267 235 19 84 chr4 116339238 116339345 -39290775 - B3A SINE B2 -1 197 98 1 1472 689 279 117 25 chr4 116339420 116339659 -39290461 + Lx8 LINE L1 7083 7343 -130 1 1472 531 238 74 0 chr4 116339667 116339789 -39290331 + B3 SINE B2 80 210 -6 1 1472 253 244 12 37 chr4 116339805 116339886 -39290234 + PB1D10 SINE Alu 39 117 0 1 1472 36 0 0 0 chr4 116339886 116339922 -39290198 + AT_rich Low_complexity Low_complexity 1 36 0 1 1472 1102 90 6 0 chr4 116339925 116340081 -39290039 + B2_Mm2 SINE B2 1 157 -38 1 1472 198 0 0 0 chr4 116340085 116340107 -39290013 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 1 1472 1548 62 5 0 chr4 116340109 116340301 -39289819 + B2_Mm1t SINE B2 1 193 0 1 1472 272 222 0 27 chr4 116340301 116340320 -39289800 + A-rich Low_complexity Low_complexity 1 19 0 1 1472 1134 88 0 0 chr4 116340320 116340467 -39289653 + B1_Mus2 SINE Alu 1 147 0 1 1472 272 222 0 27 chr4 116340467 116340558 -39289562 + A-rich Low_complexity Low_complexity 20 107 0 1 1472 214 246 0 32 chr4 116341195 116341258 -39288862 + PB1D10 SINE Alu 52 112 -5 1 1472 269 211 117 43 chr4 116341269 116341363 -39288757 + MT2B LTR ERVL 157 257 -344 1 1472 529 107 32 89 chr4 116341293 116341390 -39288730 + B1_Mur4 SINE Alu 35 127 -23 1 1472 237 33 0 0 chr4 116341390 116341420 -39288700 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1472 529 107 32 89 chr4 116341420 116341445 -39288675 + B1_Mur4 SINE Alu 128 150 0 1 1472 290 330 19 39 chr4 116341673 116341777 -39288343 + ID_B1 SINE B4 8 109 -115 1 1472 789 67 0 0 chr4 116341856 116341960 -39288160 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1472 860 229 68 29 chr4 116341971 116342178 -39287942 + B3 SINE B2 2 216 0 1 1472 1031 50 0 28 chr4 116342213 116342343 -39287777 + B1_Mus2 SINE Alu 9 138 -9 1 1472 468 48 0 0 chr4 116342343 116342406 -39287714 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 1 1472 1031 50 0 28 chr4 116342406 116342418 -39287702 + B1_Mus2 SINE Alu 139 147 0 1 1472 192 111 0 0 chr4 116342418 116342454 -39287666 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1472 463 282 63 78 chr4 116342565 116342849 -39287271 + B4A SINE B4 1 280 -12 1 1472 236 167 14 0 chr4 116342893 116342965 -39287155 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1472 983 235 0 0 chr4 116342974 116343161 -39286959 + B3 SINE B2 2 188 -28 1 1472 1171 92 0 0 chr4 116343268 116343431 -39286689 + B2_Mm2 SINE B2 2 164 -31 1 1472 21 36 0 0 chr4 116343434 116343462 -39286658 + AT_rich Low_complexity Low_complexity 1 28 0 1 1472 839 136 6 64 chr4 116343467 116343624 -39286496 - B1_Mur1 SINE Alu -1 148 1 1 1472 25 31 0 0 chr4 116343690 116343722 -39286398 + AT_rich Low_complexity Low_complexity 1 32 0 1 1472 641 211 166 0 chr4 116343722 116343897 -39286223 - B3 SINE B2 -12 204 1 1 1472 447 284 78 42 chr4 116343901 116344092 -39286028 - B3A SINE B2 0 198 1 1 1472 337 306 111 0 chr4 116344102 116344246 -39285874 + RSINE1 SINE B4 3 162 -3 1 1472 1528 33 28 0 chr4 116344256 116344437 -39285683 - B2_Mm1a SINE B2 -6 187 2 1 1472 679 150 0 9 chr4 116344483 116344597 -39285523 + B1_Mus1 SINE Alu 36 148 0 1 1472 1195 68 0 0 chr4 116344607 116344754 -39285366 + B1_Mus2 SINE Alu 1 147 0 1 1472 390 154 33 11 chr4 116344765 116344857 -39285263 + GA-rich Low_complexity Low_complexity 3 96 0 1 1472 272 262 135 10 chr4 116345122 116345226 -39284894 - PB1 SINE Alu -8 119 3 1 1472 266 267 123 12 chr4 116345232 116345395 -39284725 + L1MC LINE L1 5706 5886 -1996 1 1472 21 0 0 0 chr4 116345750 116345771 -39284349 + AT_rich Low_complexity Low_complexity 1 21 0 1 1472 339 257 20 0 chr4 116346155 116346256 -39283864 + PB1D10 SINE Alu 9 111 -6 1 1472 905 37 0 27 chr4 116346757 116346867 -39283253 + U6 snRNA snRNA 1 107 0 1 1472 42 20 0 0 chr4 116346918 116346967 -39283153 + AT_rich Low_complexity Low_complexity 1 49 0 1 1472 1320 90 21 16 chr4 116347123 116347315 -39282805 - B2_Mm1t SINE B2 0 193 1 1 1472 1211 54 0 0 chr4 116347355 116347502 -39282618 + B1_Mus2 SINE Alu 1 147 0 1 1472 666 222 8 31 chr4 116347825 116347955 -39282165 - B1_Mur1 SINE Alu -21 128 2 1 1472 1492 52 0 72 chr4 116348037 116348244 -39281876 - B2_Mm1a SINE B2 0 193 2 1 1472 879 146 34 14 chr4 116348245 116348391 -39281729 - B1_Mur4 SINE Alu -1 149 1 1 1472 878 49 8 8 chr4 116348544 116348668 -39281452 - B1_Mus1 SINE Alu 0 148 25 1 1472 472 259 69 14 chr4 116348684 116348829 -39281291 - RSINE1 SINE B4 -2 163 11 1 1472 1185 47 0 13 chr4 116349132 116349282 -39280838 + B1_Mus1 SINE Alu 1 148 0 1 1472 229 109 36 0 chr4 116349284 116349339 -39280781 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1472 2659 177 6 14 chr4 116349341 116349846 -39280274 - RLTR12B LTR ERVK -27 501 1 1 1472 485 200 67 0 chr4 116350249 116350354 -39279766 - B1_Mur1 SINE Alu -37 112 1 1 1472 923 174 0 0 chr4 116350763 116350912 -39279208 - B1_Mur3 SINE Alu 0 149 1 1 1472 923 156 13 20 chr4 116351026 116351176 -39278944 - B1_Mur4 SINE Alu -1 149 1 1 1472 489 248 8 39 chr4 116351421 116351551 -39278569 + MER20 DNA MER1_type 89 214 -5 1 1472 224 197 197 0 chr4 116351758 116351819 -39278301 + BC1_Mm scRNA scRNA 1 73 -79 1 1472 408 309 22 60 chr4 116351827 116351961 -39278159 - B1F2 SINE Alu -20 129 1 1 1472 1294 98 0 81 chr4 116352566 116352727 -39277393 + B2_Mm2 SINE B2 2 161 -34 1 1472 342 0 0 0 chr4 116352727 116352765 -39277355 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 1472 948 231 20 5 chr4 116352773 116352969 -39277151 + B3 SINE B2 1 199 -17 1 1472 1294 98 0 81 chr4 116352969 116353008 -39277112 + B2_Mm2 SINE B2 162 194 -1 1 1472 234 0 0 0 chr4 116353021 116353047 -39277073 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1472 391 217 130 0 chr4 116353059 116353151 -39276969 + B1_Mm SINE Alu 3 106 -41 1 1472 414 0 0 0 chr4 116353151 116353197 -39276923 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1472 718 222 28 0 chr4 116353197 116353341 -39276779 - B3A SINE B2 -50 148 1 1 1472 339 106 10 69 chr4 116353421 116353446 -39276674 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1472 1187 35 14 0 chr4 116353446 116353591 -39276529 - B1_Mus1 SINE Alu 0 148 2 1 1472 339 106 10 69 chr4 116353591 116353645 -39276475 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 1472 1615 42 5 0 chr4 116353645 116353836 -39276284 - B2_Mm1t SINE B2 -1 192 1 1 1472 339 106 10 69 chr4 116353836 116353856 -39276264 + (TTA)n Simple_repeat Simple_repeat 3 19 0 1 1472 326 317 158 0 chr4 116353903 116354023 -39276097 - RSINE1 SINE B4 -22 143 5 1 1472 210 167 0 0 chr4 116354034 116354070 -39276050 + T-rich Low_complexity Low_complexity 1 36 0 1 1472 1232 84 39 17 chr4 116354241 116354422 -39275698 + B2_Mm2 SINE B2 1 185 -10 1 1472 1154 119 5 56 chr4 116354430 116354626 -39275494 + B2_Mm2 SINE B2 1 186 -9 1 1472 878 141 0 6 chr4 116354643 116354800 -39275320 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 1472 1187 68 0 7 chr4 116354815 116354963 -39275157 + B1_Mus1 SINE Alu 2 148 0 1 1472 396 138 0 0 chr4 116354963 116355028 -39275092 + (A)n Simple_repeat Simple_repeat 1 65 0 1 1472 396 257 11 9 chr4 116355046 116355157 -39274963 + B1F SINE Alu 13 119 -1 1 1472 590 198 0 0 chr4 116355162 116355278 -39274842 + RSINE1 SINE B4 8 123 -42 1 1472 208 276 17 0 chr4 116355612 116355670 -39274450 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 1 1472 728 187 22 0 chr4 116356021 116356155 -39273965 + B1_Mur4 SINE Alu 11 147 -3 1 1472 880 158 7 7 chr4 116356295 116356435 -39273685 - B1_Mur3 SINE Alu -9 140 1 1 1472 217 189 0 0 chr4 116356556 116356593 -39273527 - PB1D10 SINE Alu -67 50 14 1 1472 526 178 20 0 chr4 116357062 116357163 -39272957 - B1_Mur2 SINE Alu -16 133 31 1 1472 712 176 41 27 chr4 116357207 116357353 -39272767 - B1_Mus1 SINE Alu 0 148 1 1 1472 739 172 234 6 chr4 116357586 116357761 -39272359 - B3 SINE B2 0 216 2 1 1472 303 221 33 74 chr4 116359024 116359146 -39270974 - B3 SINE B2 -99 117 1 1 1472 262 260 178 0 chr4 116359266 116359339 -39270781 - ID_B1 SINE B4 -34 190 105 1 1472 1221 73 73 0 chr4 116360306 116360485 -39269635 - B2_Mm1a SINE B2 0 193 2 1 1472 733 190 22 0 chr4 116360520 116360657 -39269463 - B1_Mur2 SINE Alu -5 144 5 1 1472 403 276 38 76 chr4 116360521 116360678 -39269442 - B4 SINE B4 -72 220 70 1 1472 226 242 94 66 chr4 116360693 116360799 -39269321 - B1_Mur2 SINE Alu -1 148 40 1 1472 1191 49 7 0 chr4 116360816 116360960 -39269160 - B1_Mm SINE Alu 0 147 3 1 1472 547 241 141 47 chr4 116360972 116361164 -39268956 - B3 SINE B2 -4 212 3 1 1472 264 251 2 2 chr4 116361378 116361445 -39268675 + B1F1 SINE Alu 81 149 0 1 1472 425 75 134 0 chr4 116361460 116361527 -39268593 + B1_Mur4 SINE Alu 69 144 -6 1 1472 278 153 16 63 chr4 116361590 116361653 -39268467 - B1_Mur3 SINE Alu 0 149 90 1 1472 331 301 105 9 chr4 116361665 116361779 -39268341 - B3 SINE B2 -89 127 3 1 1472 1145 81 0 13 chr4 116362764 116362914 -39267206 - B1_Mus1 SINE Alu 0 148 1 1 1472 384 40 0 0 chr4 116362940 116362990 -39267130 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1472 601 302 52 0 chr4 116362996 116363168 -39266952 - B3 SINE B2 -17 199 19 1 1472 1055 95 13 0 chr4 116363171 116363329 -39266791 + B2_Mm1t SINE B2 1 160 -33 1 1472 207 0 0 0 chr4 116363329 116363352 -39266768 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1472 228 192 38 19 chr4 116363373 116363426 -39266694 - ID_B1 SINE B4 -64 160 107 1 1472 481 181 43 0 chr4 116363462 116363556 -39266564 - B1_Mur3 SINE Alu -1 148 51 1 1472 373 191 14 201 chr4 116363583 116363727 -39266393 - PB1D10 SINE Alu 0 117 1 1 1472 295 235 109 128 chr4 116363588 116363744 -39266376 - B4A SINE B4 -72 220 68 1 1472 348 212 172 26 chr4 116364197 116364313 -39265807 - B1F1 SINE Alu 0 149 17 1 1472 324 145 14 18 chr4 116364594 116364660 -39265460 - B2_Mm2 SINE B2 -82 116 46 1 1472 972 130 25 6 chr4 116364739 116364902 -39265218 - B2_Mm1t SINE B2 -26 167 2 1 1472 1275 27 0 0 chr4 116365203 116365350 -39264770 - B1_Mm SINE Alu 0 147 1 1 1472 252 232 56 28 chr4 116365828 116365899 -39264221 - B4 SINE B4 -219 73 1 1 1472 390 206 173 22 chr4 116366040 116366179 -39263941 - ID_B1 SINE B4 -57 167 8 1 1472 363 188 281 0 chr4 116366699 116366795 -39263325 + B1_Mus2 SINE Alu 24 146 -1 1 1472 21 36 0 0 chr4 116366795 116366823 -39263297 + AT_rich Low_complexity Low_complexity 1 28 0 1 1472 2124 92 55 7 chr4 116366823 116367130 -39262990 - L1Md_F2 LINE L1 0 6582 6261 1 1472 603 294 45 0 chr4 116367166 116367343 -39262777 + B3 SINE B2 5 189 -27 1 1472 272 200 187 0 chr4 116367629 116367704 -39262416 + B1F SINE Alu 12 100 -49 1 1472 270 372 52 17 chr4 116368061 116368176 -39261944 + PB1D7 SINE Alu 1 119 -1 1 1472 246 193 245 64 chr4 116368319 116368413 -39261707 - ID_B1 SINE B4 -12 212 102 1 1472 529 135 45 0 chr4 116368591 116368680 -39261440 + B1_Mur4 SINE Alu 55 147 -3 1 1472 255 93 0 0 chr4 116368849 116368892 -39261228 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1472 1476 44 33 0 chr4 116368900 116369082 -39261038 - B2_Mm1a SINE B2 -3 190 3 1 1472 422 30 56 69 chr4 116369115 116369187 -39260933 + B1_Mus2 SINE Alu 77 147 0 1 1472 1191 48 7 0 chr4 116369447 116369593 -39260527 - B1_Mus1 SINE Alu 0 148 2 1 1472 379 227 18 68 chr4 116369771 116369891 -39260229 - PB1D9 SINE Alu 0 120 11 1 1472 409 243 82 72 chr4 116370332 116370527 -39259593 + RMER2 LTR ERV1 344 540 -27 1 1472 1158 96 48 0 chr4 116370553 116370719 -39259401 - B2_Mm1t SINE B2 -19 174 1 1 1472 1237 161 128 28 chr4 116370957 116371239 -39258881 + RMER6A LTR ERVK 439 748 -8 1 1472 344 188 11 86 chr4 116371521 116371614 -39258506 - B1_Mur4 SINE Alu -51 99 14 1 1472 290 325 12 0 chr4 116371616 116371699 -39258421 - 4.5SRNA scRNA scRNA 0 94 11 1 1472 451 198 12 0 chr4 116372273 116372354 -39257766 - B3 SINE B2 -134 82 1 1 1472 311 295 141 123 chr4 116372354 116372474 -39257646 - B4 SINE B4 -69 223 98 1 1472 688 123 110 44 chr4 116372474 116372610 -39257510 - B1_Mus1 SINE Alu 0 148 4 1 1472 311 295 141 123 chr4 116372610 116372708 -39257412 - B4 SINE B4 -195 97 1 1 1472 298 228 72 13 chr4 116372811 116372926 -39257194 - MTD LTR MaLR -39 382 251 1 1472 401 304 36 0 chr4 116373023 116373135 -39256985 + ID_B1 SINE B4 36 151 -73 1 1472 1371 163 183 6 chr4 116373447 116373775 -39256345 - ORR1B1 LTR MaLR -8 386 1 1 1472 338 200 13 79 chr4 116373788 116373864 -39256256 + RSINE1 SINE B4 76 146 -19 1 1472 313 250 44 22 chr4 116373985 116374075 -39256045 - B3A SINE B2 -57 141 50 1 1472 338 175 32 0 chr4 116374380 116374443 -39255677 - B2_Mm2 SINE B2 -111 84 20 1 1472 180 111 0 0 chr4 116374460 116374487 -39255633 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1472 2589 7 0 0 chr4 116374515 116374799 -39255321 - L1Md_A LINE L1 -1 6581 6298 1 1472 645 140 195 38 chr4 116375335 116375520 -39254600 + URR1B DNA MER1_type 9 222 -3 1 1472 1238 48 0 0 chr4 116375555 116375702 -39254418 + B1_Mus2 SINE Alu 1 147 0 1 1472 425 169 0 82 chr4 116375882 116375979 -39254141 + PB1D9 SINE Alu 32 120 0 1 1472 479 235 183 0 chr4 116376559 116376712 -39253408 - B3 SINE B2 -13 203 23 1 1472 1516 59 16 0 chr4 116376791 116376978 -39253142 + B2_Mm2 SINE B2 2 191 -4 1 1472 288 75 0 0 chr4 116376981 116377021 -39253099 + B1_Mus1 SINE Alu 1 40 -108 1 1472 198 91 0 0 chr4 116377370 116377403 -39252717 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1472 363 262 0 23 chr4 116377413 116377499 -39252621 - ID_B1 SINE B4 -33 191 108 1 1472 1506 58 27 0 chr4 116377855 116378043 -39252077 + B2_Mm1a SINE B2 1 193 0 1 1472 1758 16 0 0 chr4 116378176 116378369 -39251751 + B2_Mm1a SINE B2 1 193 0 1 1472 563 200 0 0 chr4 116378679 116378784 -39251336 + B1_Mus2 SINE Alu 30 134 -13 1 1472 225 0 0 0 chr4 116378784 116378809 -39251311 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1472 180 191 0 0 chr4 116378830 116378860 -39251260 + A-rich Low_complexity Low_complexity 1 30 0 1 1472 1298 27 0 0 chr4 116378860 116379007 -39251113 + B1_Mus2 SINE Alu 1 147 0 1 1472 180 191 0 0 chr4 116379007 116379018 -39251102 + A-rich Low_complexity Low_complexity 31 41 0 1 1472 198 167 0 0 chr4 116379046 116379082 -39251038 + A-rich Low_complexity Low_complexity 1 36 0 1 1472 505 175 167 0 chr4 116379497 116379611 -39250509 - B1_Mur1 SINE Alu -11 138 6 1 1472 1472 61 0 6 chr4 116379699 116379881 -39250239 - B2_Mm2 SINE B2 -14 181 1 1 1472 288 0 0 0 chr4 116381808 116381840 -39248280 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1472 808 120 177 0 chr4 116382945 116383103 -39247017 + B2_Mm2 SINE B2 1 186 -9 1 1472 486 177 24 18 chr4 116383109 116383276 -39246844 + RMER17C LTR ERVK 109 276 -134 1 1472 533 269 45 0 chr4 116383296 116383430 -39246690 + B1_Mur1 SINE Alu 10 149 0 1 1472 278 285 71 27 chr4 116383432 116383553 -39246567 - B3 SINE B2 -64 131 2 1 1472 1241 27 7 0 chr4 116383604 116383750 -39246370 + B1_Mm SINE Alu 1 147 0 1 1472 280 309 0 24 chr4 116383781 116383864 -39246256 - ID4_ SINE ID 0 83 3 1 1472 1097 130 198 0 chr4 116384116 116384293 -39245827 - B3 SINE B2 0 216 5 1 1472 1186 55 0 0 chr4 116384331 116384477 -39245643 - B1_Mm SINE Alu 0 147 2 1 1472 774 212 20 0 chr4 116384495 116384641 -39245479 - B1_Mur2 SINE Alu 0 149 1 1 1472 303 71 0 0 chr4 116384647 116384689 -39245431 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1472 291 246 0 30 chr4 116384717 116384784 -39245336 - tRNA-Ala-GCA tRNA tRNA -7 68 4 1 1472 328 299 11 0 chr4 116385576 116385663 -39244457 - ID_B1 SINE B4 -57 167 80 1 1472 189 0 0 0 chr4 116385663 116385684 -39244436 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1472 255 324 35 61 chr4 116385685 116385800 -39244320 - PB1D10 SINE Alu -1 116 5 1 1472 1668 26 0 15 chr4 116385819 116386014 -39244106 - B2_Mm1a SINE B2 0 193 2 1 1472 582 305 20 0 chr4 116386056 116386207 -39243913 - RSINE1 SINE B4 -10 155 2 1 1472 249 167 0 60 chr4 116386218 116386301 -39243819 - Lx9 LINE L1 -109 7535 7458 1 1472 1178 108 15 4 chr4 116386305 116386489 -39243631 - B2_Mm2 SINE B2 -13 203 6 1 1472 314 83 0 0 chr4 116386879 116386927 -39243193 - U5 snRNA snRNA -67 49 2 1 1472 509 197 129 16 chr4 116386939 116387063 -39243057 - B1F SINE Alu -3 146 9 1 1472 186 118 0 0 chr4 116387245 116387279 -39242841 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1472 910 33 0 16 chr4 116387279 116387401 -39242719 - B1_Mus2 SINE Alu 0 147 28 1 1472 22 0 0 0 chr4 116387410 116387432 -39242688 + AT_rich Low_complexity Low_complexity 1 22 0 1 1472 501 226 105 0 chr4 116388099 116388232 -39241888 - B1_Mur2 SINE Alu -1 148 2 1 1472 835 236 94 0 chr4 116388321 116388512 -39241608 - B3 SINE B2 -7 209 1 1 1472 1374 81 37 11 chr4 116388534 116388722 -39241398 - B2_Mm2 SINE B2 -2 193 1 1 1472 334 322 84 8 chr4 116388722 116388770 -39241350 - ID_B1 SINE B4 -10 214 160 1 1472 1249 217 65 52 chr4 116388770 116389139 -39240981 - ORR1D1 LTR MaLR 0 374 1 1 1472 334 322 84 8 chr4 116389139 116389209 -39240911 - ID_B1 SINE B4 -65 159 88 1 1472 1233 91 0 79 chr4 116389308 116389511 -39240609 + B2_Mm2 SINE B2 1 187 -8 1 1472 21 0 0 0 chr4 116389601 116389622 -39240498 + AT_rich Low_complexity Low_complexity 1 21 0 1 1472 402 212 121 26 chr4 116389623 116389683 -39240437 + ID_B1 SINE B4 90 149 -75 1 1472 1362 71 44 0 chr4 116389683 116389865 -39240255 - B2_Mm2 SINE B2 -4 191 2 1 1472 402 212 121 26 chr4 116389865 116389920 -39240200 + ID_B1 SINE B4 150 215 -9 1 1472 462 148 289 8 chr4 116389971 116390120 -39240000 - MTD LTR MaLR -14 405 227 1 1472 608 80 211 18 chr4 116390131 116390245 -39239875 - B2_Mm2 SINE B2 -14 181 46 1 1472 195 286 0 0 chr4 116390648 116390725 -39239395 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1472 422 240 52 10 chr4 116390785 116390882 -39239238 + PB1D9 SINE Alu 5 105 -15 1 1472 1210 41 0 13 chr4 116390882 116391031 -39239089 + B1_Mus1 SINE Alu 2 148 0 1 1472 1090 175 42 28 chr4 116391088 116391300 -39238820 - B3 SINE B2 0 216 2 1 1472 335 281 74 46 chr4 116391341 116391449 -39238671 - B1F1 SINE Alu -38 111 1 1 1472 309 286 143 0 chr4 116391492 116391590 -39238530 - ID_B1 SINE B4 -14 210 99 1 1472 273 266 193 9 chr4 116391590 116391606 -39238514 - B1F SINE Alu -14 135 1 1 22 559 246 213 0 chr4 116391780 116391963 -39238157 - ID_B1 SINE B4 -2 222 1 1 1473 26 30 0 0 chr4 116392358 116392391 -39237729 + AT_rich Low_complexity Low_complexity 1 33 0 1 1473 192 40 0 0 chr4 116392548 116392573 -39237547 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1473 1158 43 0 0 chr4 116392579 116392717 -39237403 - B1_Mus2 SINE Alu -9 138 1 1 1473 337 214 0 28 chr4 116395438 116395510 -39234610 - B1_Mur1 SINE Alu -2 147 78 1 1473 890 190 43 0 chr4 116395514 116395698 -39234422 - B3 SINE B2 -16 200 9 1 1473 331 113 0 31 chr4 116395715 116395779 -39234341 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1 1473 736 274 76 0 chr4 116396032 116396229 -39233891 + B3 SINE B2 1 212 -4 1 1473 23 0 0 0 chr4 116397169 116397192 -39232928 + AT_rich Low_complexity Low_complexity 1 23 0 1 1473 225 65 0 0 chr4 116397197 116397228 -39232892 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1473 475 263 92 18 chr4 116397228 116397337 -39232783 - RSINE1 SINE B4 -46 119 2 1 1473 344 292 0 58 chr4 116397492 116397612 -39232508 + PB1D10 SINE Alu 1 113 -4 1 1473 22 0 0 0 chr4 116397744 116397766 -39232354 + AT_rich Low_complexity Low_complexity 1 22 0 1 1473 519 252 34 48 chr4 116398242 116398388 -39231732 + B1_Mur3 SINE Alu 5 148 -1 1 1473 226 255 0 0 chr4 116398824 116398875 -39231245 + ID_B1 SINE B4 167 217 -7 1 1473 1119 64 0 0 chr4 116398883 116399023 -39231097 + B1_Mus1 SINE Alu 1 140 -8 1 1473 240 35 0 0 chr4 116399023 116399052 -39231068 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1473 216 0 0 0 chr4 116399057 116399081 -39231039 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1473 387 307 39 16 chr4 116399108 116399237 -39230883 + RSINE1 SINE B4 3 134 -31 1 1473 238 292 93 9 chr4 116399346 116399453 -39230667 - L1MC LINE L1 -2169 5713 5598 1 1473 289 285 13 0 chr4 116399533 116399621 -39230499 - MIR SINE MIR -31 237 145 1 1473 223 237 17 0 chr4 116399922 116399981 -39230139 - ID4_ SINE ID -1 82 23 1 1473 709 182 58 7 chr4 116400349 116400487 -39229633 + B1_Mur3 SINE Alu 5 149 0 1 1473 31 0 0 0 chr4 116400619 116400650 -39229470 + AT_rich Low_complexity Low_complexity 1 31 0 1 1473 860 263 24 5 chr4 116401009 116401219 -39228901 + B3 SINE B2 2 215 -1 1 1473 684 276 0 22 chr4 116401232 116401417 -39228703 - B3A SINE B2 -16 182 2 1 1473 684 78 0 0 chr4 116401494 116401596 -39228524 - B2_Mm1a SINE B2 0 193 92 1 1473 337 149 60 0 chr4 116401963 116402030 -39228090 - ORR1C2 LTR MaLR 0 384 314 1 1473 781 178 30 0 chr4 116402026 116402161 -39227959 - B1_Mus2 SINE Alu 0 147 9 1 1473 884 252 69 78 chr4 116402162 116402468 -39227652 - ORR1C2 LTR MaLR -65 319 17 1 1473 333 0 0 0 chr4 116402485 116402522 -39227598 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1473 574 182 70 93 chr4 116402523 116402599 -39227521 - B2_Mm2 SINE B2 -40 176 92 1 1473 1433 69 32 0 chr4 116402599 116402788 -39227332 + B2_Mm2 SINE B2 1 195 0 1 1473 574 116 62 125 chr4 116402788 116402874 -39227246 - B2_Mm2 SINE B2 -104 91 10 1 1473 198 360 0 33 chr4 116402947 116403039 -39227081 + MIRm SINE MIR 184 272 -4 1 1473 358 263 70 63 chr4 116403057 116403074 -39227046 + B4 SINE B4 76 218 -74 1 1473 627 176 56 0 chr4 116403074 116403199 -39226921 + B1_Mus2 SINE Alu 8 139 -8 1 1473 497 44 15 0 chr4 116403199 116403267 -39226853 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 1 1473 588 296 79 42 chr4 116403301 116403516 -39226604 + B4 SINE B4 7 229 -63 1 1473 193 282 99 33 chr4 116403655 116403776 -39226344 - L2c LINE L2 -77 3310 3182 1 1473 618 287 84 35 chr4 116403908 116404219 -39225901 - MTE2b LTR MaLR -45 334 9 1 1473 213 154 26 0 chr4 116404280 116404319 -39225801 + B2_Mm2 SINE B2 2 41 -154 1 1473 762 97 48 0 chr4 116404325 116404449 -39225671 + B1_Mus2 SINE Alu 9 138 -9 1 1473 492 304 27 7 chr4 116405017 116405166 -39224954 - RSINE1 SINE B4 -10 155 4 1 1473 455 261 26 0 chr4 116405196 116405311 -39224809 + PB1D7 SINE Alu 1 118 -2 1 1473 1570 37 15 25 chr4 116405933 116406129 -39223991 - B2_Mm2 SINE B2 0 195 2 1 1473 472 165 9 80 chr4 116406145 116406257 -39223863 + B1_Mur4 SINE Alu 2 105 -45 1 1473 1166 75 0 0 chr4 116406291 116406437 -39223683 - B1_Mus2 SINE Alu 0 147 2 1 1473 705 185 203 23 chr4 116406480 116406657 -39223463 - B3 SINE B2 -3 213 5 1 1473 295 256 12 24 chr4 116406704 116406788 -39223332 + CT-rich Low_complexity Low_complexity 3 85 0 1 1473 640 186 40 0 chr4 116406839 116406963 -39223157 + B1_Mur1 SINE Alu 14 142 -7 1 1473 372 262 8 33 chr4 116407079 116407212 -39222908 - MER20B DNA MER1_type -7 212 81 1 1473 266 235 59 0 chr4 116407353 116407421 -39222699 + BC1_Mm scRNA scRNA 16 87 -65 1 1473 613 194 56 21 chr4 116407456 116407598 -39222522 + B1_Mus1 SINE Alu 1 147 -1 1 1473 218 262 0 0 chr4 116407646 116407688 -39222432 + polypyrimidine Low_complexity Low_complexity 4 45 0 1 1473 612 269 66 0 chr4 116407689 116407871 -39222249 - ID_B1 SINE B4 -29 195 2 1 1473 532 210 60 142 chr4 116408025 116408258 -39221862 + B3 SINE B2 3 216 0 1 1473 220 154 132 19 chr4 116408406 116408459 -39221661 + RSINE1 SINE B4 84 142 -23 1 1473 1345 75 27 5 chr4 116408530 116408718 -39221402 - B2_Mm2 SINE B2 -3 192 1 1 1473 456 155 82 10 chr4 116408718 116408816 -39221304 - B1_Mur2 SINE Alu -1 148 44 1 1473 366 226 86 0 chr4 116409083 116409176 -39220944 - RSINE1 SINE B4 -23 142 42 1 1473 890 177 0 0 chr4 116409205 116409216 -39220904 - B1_Mus1 SINE Alu 0 148 138 1 1473 216 0 0 0 chr4 116409216 116409240 -39220880 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1473 890 177 0 0 chr4 116409240 116409375 -39220745 - B1_Mus1 SINE Alu -11 137 3 1 1473 614 321 102 37 chr4 116409489 116409842 -39220278 - MTEa LTR MaLR 0 379 4 1 1473 699 135 159 20 chr4 116409876 116410027 -39220093 - URR1B DNA MER1_type 0 225 54 1 1473 468 309 87 5 chr4 116410128 116410310 -39219810 - Lx5 LINE L1 -4 7054 6845 1 1473 357 288 63 16 chr4 116410310 116410437 -39219683 - MTE-int LTR MaLR -58 1522 1390 1 1473 289 246 0 15 chr4 116410462 116410528 -39219592 - ID_B1 SINE B4 -14 210 146 1 1473 1641 42 0 0 chr4 116410531 116410722 -39219398 - B2_Mm1a SINE B2 -2 191 1 1 1473 269 75 0 0 chr4 116410722 116410762 -39219358 - B2_Mm2 SINE B2 -154 41 2 1 1473 268 254 70 0 chr4 116410762 116410831 -39219289 - ID_B1 SINE B4 -72 152 79 1 1473 2143 274 87 141 chr4 116410828 116411381 -39218739 - MTE-int LTR MaLR -186 1394 825 1 1473 927 146 0 0 chr4 116411381 116411525 -39218595 + B1_Mur3 SINE Alu 1 144 -5 1 1473 2143 274 87 141 chr4 116411525 116411955 -39218165 - MTE-int LTR MaLR -756 824 469 1 1473 225 0 0 0 chr4 116411955 116411980 -39218140 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1473 2143 274 87 141 chr4 116411980 116412316 -39217804 - MTE-int LTR MaLR -1112 468 145 1 1473 246 241 0 49 chr4 116412546 116412570 -39217550 - B1F SINE Alu -22 127 104 1 1473 315 0 0 0 chr4 116412570 116412605 -39217515 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1473 246 241 0 49 chr4 116412605 116412641 -39217479 - B1F SINE Alu -46 103 71 1 1473 1967 139 36 197 chr4 116412710 116413212 -39216908 + MTC LTR MaLR 1 421 0 1 1473 359 278 28 0 chr4 116413273 116413381 -39216739 + PB1D10 SINE Alu 1 111 -6 1 1473 286 133 0 16 chr4 116413494 116413555 -39216565 + B2_Mm2 SINE B2 131 190 -5 1 1473 674 73 45 0 chr4 116413554 116413664 -39216456 - B2_Mm2 SINE B2 -26 169 55 1 1473 240 100 25 0 chr4 116413664 116413704 -39216416 - B2_Mm2 SINE B2 -83 112 72 1 1473 446 167 93 0 chr4 116413706 116413814 -39216306 - B2_Mm2 SINE B2 -76 119 2 1 1473 332 197 15 0 chr4 116413836 116413902 -39216218 - MTD LTR MaLR -352 67 1 1 1473 217 219 0 0 chr4 116413910 116413951 -39216169 + B3 SINE B2 98 138 -78 1 1473 21 71 0 0 chr4 116413982 116414024 -39216096 + AT_rich Low_complexity Low_complexity 1 42 0 1 1473 512 241 9 0 chr4 116414622 116414734 -39215386 - PB1D9 SINE Alu -3 117 5 1 1473 259 240 0 12 chr4 116414836 116414919 -39215201 - ID4_ SINE ID -51 101 21 1 1473 1213 174 14 18 chr4 116415140 116415357 -39214763 - B3 SINE B2 0 216 1 1 1473 1183 48 7 0 chr4 116415385 116415531 -39214589 + B1_Mus2 SINE Alu 1 147 0 1 1473 623 204 53 0 chr4 116415663 116415795 -39214325 + RMER4B LTR ERVK 297 435 -150 1 1473 238 269 0 56 chr4 116416039 116416110 -39214010 - ID4_ SINE ID -16 67 1 1 1473 1078 103 0 0 chr4 116416220 116416366 -39213754 - B1_Mus1 SINE Alu -1 147 2 1 1473 207 0 0 0 chr4 116416377 116416400 -39213720 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1473 251 161 36 0 chr4 116416448 116416504 -39213616 - L1_Mur3 LINE L1 -1821 4059 4002 1 1473 325 227 13 13 chr4 116416556 116416632 -39213488 - B3 SINE B2 -6 210 135 1 1473 635 195 16 0 chr4 116416718 116416841 -39213279 + RSINE1 SINE B4 3 127 -38 1 1473 255 300 25 0 chr4 116416930 116417010 -39213110 + ID4 SINE ID 1 82 -1 1 1473 500 261 126 34 chr4 116417102 116417382 -39212738 + MLT2B4 LTR ERVL 10 323 -233 1 1473 1465 89 5 0 chr4 116417652 116417843 -39212277 + B2_Mm1a SINE B2 2 193 0 1 1473 290 266 13 0 chr4 116417850 116417929 -39212191 - ID_B1 SINE B4 -63 161 82 1 1473 1299 27 0 0 chr4 116418329 116418476 -39211644 - B1_Mus2 SINE Alu 0 147 1 1 1473 402 260 38 45 chr4 116418657 116418790 -39211330 + MER58B DNA MER1_type 210 341 0 1 1473 190 293 24 24 chr4 116419254 116419338 -39210782 + MIRm SINE MIR 184 267 -9 1 1473 448 243 166 34 chr4 116419716 116419891 -39210229 - B3A SINE B2 0 198 1 1 1473 551 277 31 6 chr4 116419998 116420079 -39210041 + B4A SINE B4 3 87 -205 1 1473 230 313 42 25 chr4 116420079 116420197 -39209923 + PB1D9 SINE Alu 1 120 0 1 1473 474 65 0 0 chr4 116420260 116420322 -39209798 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 1 1473 357 198 115 0 chr4 116420352 116420448 -39209672 + B3 SINE B2 82 188 -28 1 1473 258 219 0 0 chr4 116420512 116420576 -39209544 + CT-rich Low_complexity Low_complexity 1 64 0 1 1473 1200 117 39 11 chr4 116420955 116421136 -39208984 - B2_Mm2 SINE B2 -9 186 1 1 1473 1102 102 0 0 chr4 116421161 116421308 -39208812 - B1_Mus1 SINE Alu 0 148 2 1 1473 704 187 22 0 chr4 116421362 116421496 -39208624 + B1_Mus1 SINE Alu 6 142 -6 1 1473 637 174 17 0 chr4 116421572 116421687 -39208433 + B1_Mus2 SINE Alu 24 140 -7 1 1473 306 0 0 0 chr4 116422382 116422416 -39207704 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1473 232 302 16 0 chr4 116422451 116422514 -39207606 - ID4 SINE ID -18 65 2 1 1473 473 224 47 0 chr4 116422921 116423028 -39207092 + ID_B1 SINE B4 84 195 -29 1 1473 291 136 327 46 chr4 116423181 116423291 -39206829 - B2_Mm2 SINE B2 -8 187 47 1 1473 1074 90 23 46 chr4 116423342 116423517 -39206603 - B2_Mm1a SINE B2 -22 171 1 1 1473 346 233 47 0 chr4 116423524 116423610 -39206510 - PB1D10 SINE Alu -1 116 27 1 1473 471 18 0 0 chr4 116423841 116423897 -39206223 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1 1473 324 256 11 11 chr4 116424303 116424390 -39205730 + RSINE1 SINE B4 10 96 -69 1 1473 21 0 0 0 chr4 116424479 116424500 -39205620 + AT_rich Low_complexity Low_complexity 1 21 0 1 1473 835 121 0 0 chr4 116424500 116424624 -39205496 + B1_Mus2 SINE Alu 24 147 0 1 1473 878 197 97 15 chr4 116424645 116424841 -39205279 + B3 SINE B2 3 214 -2 1 1473 345 197 0 0 chr4 116424862 116424933 -39205187 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1473 515 218 81 0 chr4 116425146 116425270 -39204850 - B1F SINE Alu -6 143 10 1 1473 470 219 305 0 chr4 116425279 116425430 -39204690 - B3 SINE B2 -19 197 1 1 1473 787 174 65 0 chr4 116425461 116425599 -39204521 + B1_Mus1 SINE Alu 1 147 -1 1 1473 1426 74 10 16 chr4 116425635 116425827 -39204293 + B2_Mm1t SINE B2 1 191 -2 1 1473 230 235 0 0 chr4 116426221 116426272 -39203848 - B4 SINE B4 -158 134 84 1 1473 930 9 0 0 chr4 116426521 116426628 -39203492 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1 1473 279 54 0 0 chr4 116426637 116426674 -39203446 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1473 660 179 66 22 chr4 116426674 116426801 -39203319 - B1_Mus2 SINE Alu -11 136 1 1 1473 863 116 6 104 chr4 116426849 116427013 -39203107 - B1_Mus1 SINE Alu 0 148 1 1 1473 518 325 19 13 chr4 116427059 116427218 -39202902 - RSINE1 SINE B4 -4 161 2 1 1473 351 209 92 11 chr4 116427226 116427313 -39202807 - PB1D10 SINE Alu -7 113 20 1 1473 331 186 42 14 chr4 116427692 116427763 -39202357 + ID4_ SINE ID 1 73 -10 1 1473 789 11 0 0 chr4 116428209 116428299 -39201821 + (TTTTC)n Simple_repeat Simple_repeat 1 90 0 1 1473 1093 108 6 6 chr4 116428301 116428478 -39201642 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1 1473 1437 72 0 39 chr4 116428618 116428821 -39201299 - B2_Mm2 SINE B2 0 195 1 1 1473 3341 171 181 24 chr4 116428821 116429640 -39200480 - RMER19B LTR ERVK -13 889 6 1 1473 1122 65 0 0 chr4 116429777 116429915 -39200205 + B1_Mus1 SINE Alu 1 138 -10 1 1473 240 35 0 0 chr4 116429915 116429944 -39200176 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1473 379 300 0 11 chr4 116430050 116430141 -39199979 - PB1D7 SINE Alu -30 90 1 1 1473 1324 232 52 21 chr4 116430181 116430543 -39199577 - MTD LTR MaLR -8 392 1 1 1473 289 303 0 124 chr4 116430608 116430721 -39199399 - RSINE1 SINE B4 -53 112 14 1 1473 354 280 46 18 chr4 116430735 116430844 -39199276 - B1F SINE Alu 0 149 38 1 1473 411 198 19 38 chr4 116430854 116430959 -39199161 + PB1D10 SINE Alu 5 107 -10 1 1473 377 297 36 0 chr4 116430968 116431079 -39199041 + ID_B1 SINE B4 85 199 -25 1 1473 326 150 17 0 chr4 116431052 116431112 -39199008 + B1F SINE Alu 65 125 -24 1 1473 616 237 158 30 chr4 116431122 116431426 -39198694 - RLTR15 LTR ERVK -16 343 1 1 1473 1258 93 33 6 chr4 116431755 116431938 -39198182 + B2_Mm1t SINE B2 1 188 -5 1 1473 837 249 23 28 chr4 116432137 116432352 -39197768 + B3 SINE B2 3 216 0 1 1473 273 244 36 24 chr4 116432427 116432511 -39197609 + B1F SINE Alu 2 86 -63 1 1473 198 250 19 0 chr4 116432572 116432624 -39197496 - L2 LINE L2 -1005 2414 2362 1 1473 845 238 42 0 chr4 116432770 116432959 -39197161 + B3 SINE B2 17 213 -3 1 1473 372 181 160 0 chr4 116432978 116433072 -39197048 + B1_Mur4 SINE Alu 35 143 -7 1 1473 560 271 0 15 chr4 116433132 116433263 -39196857 + RSINE1 SINE B4 4 132 -33 1 1473 237 311 144 24 chr4 116433622 116433747 -39196373 + MIRb SINE MIR 72 211 -57 1 1473 228 267 0 0 chr4 116433771 116433831 -39196289 - PB1D10 SINE Alu -6 111 52 1 1473 306 284 80 0 chr4 116434171 116434259 -39195861 + B4 SINE B4 195 289 -3 1 1473 219 316 0 0 chr4 116434271 116434328 -39195792 + (CATA)n Simple_repeat Simple_repeat 4 60 0 1 1473 259 276 40 0 chr4 116434356 116434432 -39195688 + B1F1 SINE Alu 9 87 -62 1 1473 424 158 287 0 chr4 116434715 116434815 -39195305 - B1_Mus2 SINE Alu 0 147 19 1 1473 652 299 29 0 chr4 116434815 116434989 -39195131 + B3 SINE B2 2 180 -36 1 1473 306 0 0 0 chr4 116435015 116435049 -39195071 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1 1473 342 0 0 0 chr4 116435062 116435100 -39195020 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1473 1116 45 8 0 chr4 116435102 116435235 -39194885 - B1_Mus1 SINE Alu -13 135 2 1 1473 814 137 0 0 chr4 116435275 116435399 -39194721 + B3 SINE B2 6 129 -87 1 1473 21 36 0 0 chr4 116435414 116435442 -39194678 + AT_rich Low_complexity Low_complexity 1 28 0 1 1473 407 259 0 12 chr4 116435547 116435633 -39194487 - PB1D10 SINE Alu -31 86 2 1 1473 564 268 63 5 chr4 116435824 116436015 -39194105 + B3 SINE B2 2 203 -13 1 1473 1194 48 0 14 chr4 116436166 116436314 -39193806 + B1_Mm SINE Alu 2 147 0 1 1473 262 101 456 39 chr4 116436343 116436446 -39193674 + B1_Mus1 SINE Alu 1 146 -2 1 1473 23 0 0 0 chr4 116436475 116436498 -39193622 + AT_rich Low_complexity Low_complexity 1 23 0 1 1473 319 252 129 38 chr4 116436642 116436774 -39193346 - MLT1J2 LTR MaLR -188 260 117 1 1473 378 0 0 0 chr4 116437078 116437120 -39193000 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1473 552 186 292 6 chr4 116437207 116437375 -39192745 - B3 SINE B2 0 216 1 1 1473 186 71 0 0 chr4 116437390 116437418 -39192702 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1 1473 1061 38 45 0 chr4 116437425 116437558 -39192562 - B1_Mm SINE Alu -8 139 1 1 1473 310 333 49 7 chr4 116437561 116437703 -39192417 - B1F SINE Alu 0 149 2 1 1473 596 230 71 14 chr4 116437816 116437957 -39192163 - B1_Mur3 SINE Alu 0 149 1 1 1473 322 318 39 26 chr4 116438187 116438342 -39191778 - ID_B1 SINE B4 -1 223 67 1 1473 758 223 0 31 chr4 116438445 116438607 -39191513 - B3 SINE B2 0 216 60 1 1473 749 233 119 21 chr4 116438645 116438838 -39191282 - B3 SINE B2 -4 212 1 1 1473 255 239 29 29 chr4 116438854 116438923 -39191197 + B4A SINE B4 216 284 -8 1 1473 315 0 0 0 chr4 116438945 116438980 -39191140 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1473 24 0 0 0 chr4 116439035 116439059 -39191061 + AT_rich Low_complexity Low_complexity 1 24 0 1 1473 984 123 7 7 chr4 116439170 116439317 -39190803 + B1_Mus1 SINE Alu 2 148 0 1 1473 337 158 0 38 chr4 116439317 116439396 -39190724 + GA-rich Low_complexity Low_complexity 1 76 0 1 1473 420 298 29 0 chr4 116439677 116439781 -39190339 - PB1D10 SINE Alu -8 109 3 1 1473 391 315 24 0 chr4 116440434 116440561 -39189559 - RSINE1 SINE B4 -33 132 3 1 1473 27 0 0 0 chr4 116440575 116440602 -39189518 + AT_rich Low_complexity Low_complexity 1 27 0 1 1473 593 75 376 28 chr4 116440642 116440751 -39189369 - B1_Mus1 SINE Alu -1 147 1 1 1473 905 162 189 6 chr4 116440758 116440938 -39189182 - B3 SINE B2 -1 215 3 1 1473 522 314 0 36 chr4 116440984 116441123 -39188997 - RSINE1 SINE B4 -29 136 3 1 1473 848 161 124 27 chr4 116441463 116441648 -39188472 - ORR1C1 LTR MaLR -8 376 174 1 1473 367 167 36 0 chr4 116441650 116441734 -39188386 + GA-rich Low_complexity Low_complexity 2 88 0 1 1473 882 155 11 1 chr4 116441740 116441915 -39188205 - ORR1C1 LTR MaLR -192 182 3 1 1473 248 155 224 0 chr4 116442314 116442372 -39187748 - ID2 SINE ID -10 73 3 1 1473 226 279 231 0 chr4 116442376 116442390 -39187730 + B4 SINE B4 70 107 -185 1 1473 520 176 148 0 chr4 116442390 116442498 -39187622 + B1_Mus2 SINE Alu 1 124 -23 1 1473 1333 85 27 0 chr4 116442575 116442763 -39187357 - B2_Mm1t SINE B2 0 193 1 1 1473 297 127 79 0 chr4 116442763 116442826 -39187294 - B2_Mm1a SINE B2 -1 192 125 1 1473 1353 84 6 0 chr4 116442838 116443016 -39187104 - B2_Mm1t SINE B2 -14 179 1 1 1473 21 57 0 0 chr4 116443023 116443058 -39187062 + AT_rich Low_complexity Low_complexity 1 35 0 1 1473 429 20 0 0 chr4 116443237 116443287 -39186833 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1473 2088 139 77 21 chr4 116443313 116443603 -39186517 - MTC LTR MaLR -7 414 106 1 1473 219 36 0 0 chr4 116443603 116443631 -39186489 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1473 1109 67 0 0 chr4 116443631 116443765 -39186355 - B1_Mus1 SINE Alu -13 135 2 1 1473 2265 139 77 21 chr4 116443765 116443862 -39186258 - MTC LTR MaLR -316 105 5 1 1473 602 27 0 0 chr4 116443856 116443930 -39186190 + B1_Mur4 SINE Alu 77 150 0 1 1473 637 248 0 0 chr4 116443970 116444083 -39186037 - RSINE1 SINE B4 -49 116 4 1 1473 1031 110 0 0 chr4 116444110 116444256 -39185864 - B1_Mus2 SINE Alu -1 146 1 1 1473 296 213 93 0 chr4 116445003 116445078 -39185042 - PB1D10 SINE Alu -1 116 35 1 1473 500 265 73 0 chr4 116445156 116445307 -39184813 - RSINE1 SINE B4 0 165 4 1 1473 216 0 0 0 chr4 116445308 116445332 -39184788 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 1 1473 436 88 0 56 chr4 116445372 116445444 -39184676 - B1_Mur4 SINE Alu 0 150 83 1 1473 225 65 0 0 chr4 116445444 116445475 -39184645 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1473 1158 48 0 40 chr4 116445478 116445629 -39184491 - B1_Mus1 SINE Alu -1 147 3 1 1473 243 140 0 0 chr4 116445676 116445726 -39184394 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 1 1473 396 252 70 10 chr4 116445809 116445909 -39184211 - RSINE1 SINE B4 -51 114 9 1 1473 437 159 0 120 chr4 116446056 116446156 -39183964 + PB1D9 SINE Alu 23 110 -10 1 1473 446 198 31 52 chr4 116446433 116446529 -39183591 + B1_Mur1 SINE Alu 27 149 0 1 1473 1019 70 0 101 chr4 116446547 116446706 -39183414 + B1_Mm SINE Alu 5 147 0 1 1473 203 286 0 0 chr4 116446739 116446788 -39183332 + MIR SINE MIR 12 60 -202 1 1473 302 264 27 18 chr4 116446882 116446994 -39183126 - L2 LINE L2 -1244 2175 2063 1 1473 26 30 0 0 chr4 116447330 116447363 -39182757 + AT_rich Low_complexity Low_complexity 1 33 0 1 1473 1274 101 21 0 chr4 116447828 116448016 -39182104 + B2_Mm1a SINE B2 2 193 0 1 1473 406 262 12 0 chr4 116448282 116448366 -39181754 + B1_Mur1 SINE Alu 62 146 -3 1 1473 707 132 24 24 chr4 116448567 116448691 -39181429 - B1_Mur2 SINE Alu 0 149 26 1 1473 572 201 217 72 chr4 116449102 116449268 -39180852 + B3A SINE B2 3 192 -6 1 1473 1202 43 0 0 chr4 116449293 116449431 -39180689 + B1_Mm SINE Alu 1 138 -9 1 1473 1134 194 21 16 chr4 116449500 116449694 -39180426 - B3 SINE B2 -6 210 16 1 1473 609 325 21 0 chr4 116449699 116449887 -39180233 - L2 LINE L2 -511 2908 2717 1 1473 410 217 0 46 chr4 116449898 116449985 -39180135 + ID4 SINE ID 1 83 0 1 1473 233 330 191 5 chr4 116450053 116450263 -39179857 - L2 LINE L2 -681 2738 2490 1 1473 516 275 27 7 chr4 116450298 116450448 -39179672 + ID_B1 SINE B4 1 153 -71 1 1473 1073 78 14 0 chr4 116450452 116450594 -39179526 + B1_Mus2 SINE Alu 3 146 -1 1 1473 244 326 22 191 chr4 116450652 116450712 -39179408 + RSINE1 SINE B4 15 68 -97 1 1473 1231 54 0 0 chr4 116450712 116450859 -39179261 + B1_Mm SINE Alu 1 147 0 1 1473 244 326 22 191 chr4 116450859 116450976 -39179144 + RSINE1 SINE B4 69 162 -3 1 1473 218 229 148 0 chr4 116451180 116451241 -39178879 + ID4_ SINE ID 1 70 -13 1 1473 243 114 0 0 chr4 116451374 116451418 -39178702 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1 1473 1152 62 7 14 chr4 116451436 116451584 -39178536 - B1_Mus1 SINE Alu 0 148 2 1 1473 400 39 91 0 chr4 116451596 116451673 -39178447 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 1 1473 363 174 23 0 chr4 116451673 116451747 -39178373 - B1_Mur4 SINE Alu 0 150 38 1 1473 597 262 11 86 chr4 116451858 116452033 -39178087 - RSINE1 SINE B4 -2 163 2 1 1473 189 74 0 0 chr4 116452071 116452098 -39178022 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1473 1588 171 76 25 chr4 116452099 116452416 -39177704 - RMER5 LTR ERV1 -14 520 188 1 1473 1111 82 0 13 chr4 116452421 116452570 -39177550 + B1_Mus2 SINE Alu 1 147 0 1 1473 257 229 127 45 chr4 116452611 116452721 -39177399 - Lx8 LINE L1 0 7473 7355 1 1473 946 260 56 31 chr4 116453159 116453497 -39176623 - Lx8 LINE L1 -396 7300 6953 1 1473 709 254 42 16 chr4 116453538 116453730 -39176390 - B3A SINE B2 -1 197 1 1 1473 222 298 0 0 chr4 116453794 116453851 -39176269 + B1F SINE Alu 6 62 -87 1 1473 291 217 129 24 chr4 116454353 116454438 -39175682 + B1F1 SINE Alu 56 149 0 1 1473 271 163 0 0 chr4 116454470 116454513 -39175607 - RMER10A LTR ERVL -395 47 5 1 1473 824 153 0 14 chr4 116455770 116455909 -39174211 - B1_Mur3 SINE Alu -2 147 11 1 1473 1714 131 90 54 chr4 116455911 116456243 -39173877 + RLTR24 LTR ERV1 28 371 -158 1 1473 670 166 26 52 chr4 116456243 116456396 -39173724 + B1_Mur4 SINE Alu 2 150 0 1 1473 861 254 153 46 chr4 116456396 116456616 -39173504 + RLTR24 LTR ERV1 292 527 -2 1 1473 1620 21 10 26 chr4 116456845 116457039 -39173081 - B2_Mm1a SINE B2 -1 192 2 1 1473 230 167 161 37 chr4 116457431 116457512 -39172608 + B2_Mm2 SINE B2 105 195 0 1 1473 1561 38 32 0 chr4 116457797 116457982 -39172138 + B2_Mm1a SINE B2 2 192 -1 1 1473 260 330 18 55 chr4 116458039 116458148 -39171972 - B1F2 SINE Alu -28 121 17 1 1473 963 238 0 10 chr4 116458136 116458344 -39171776 - B3 SINE B2 -10 206 1 1 1473 26 0 0 0 chr4 116458455 116458481 -39171639 + AT_rich Low_complexity Low_complexity 1 26 0 1 1473 294 259 7 0 chr4 116458481 116458552 -39171568 + PB1D10 SINE Alu 29 102 -45 1 1473 979 122 13 33 chr4 116458798 116458950 -39171170 + B1_Mur4 SINE Alu 1 149 -1 1 1473 220 259 56 0 chr4 116458970 116459024 -39171096 + ID SINE ID 10 66 -158 1 1473 414 218 45 18 chr4 116459038 116459141 -39170979 + PB1D9 SINE Alu 1 107 -13 1 1473 201 74 0 0 chr4 116459141 116459168 -39170952 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1473 484 274 0 42 chr4 116459196 116459314 -39170806 + PB1D9 SINE Alu 1 113 -7 1 1473 636 209 70 21 chr4 116459324 116459466 -39170654 + B3A SINE B2 50 198 0 1 1473 264 30 0 0 chr4 116459499 116459532 -39170588 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1473 463 203 0 0 chr4 116459541 116459615 -39170505 - PB1D9 SINE Alu -34 86 13 1 1473 1075 112 101 0 chr4 116459615 116459784 -39170336 + B2_Mm1t SINE B2 2 187 -6 1 1473 451 223 0 19 chr4 116459817 116459922 -39170198 - PB1 SINE Alu -4 123 21 1 1473 329 241 61 45 chr4 116459937 116460045 -39170075 - B1_Mur1 SINE Alu -2 147 35 1 1473 531 56 0 0 chr4 116460088 116460159 -39169961 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 1473 722 194 65 0 chr4 116460183 116460322 -39169798 - B1_Mur2 SINE Alu -1 148 1 1 1473 22 0 0 0 chr4 116460331 116460353 -39169767 + AT_rich Low_complexity Low_complexity 1 22 0 1 1473 452 297 42 0 chr4 116460461 116460579 -39169541 + ID_B1 SINE B4 100 222 -2 1 1473 366 283 56 9 chr4 116461169 116461276 -39168844 - PB1D10 SINE Alu -5 112 1 1 1473 199 277 92 0 chr4 116461821 116461886 -39168234 - MIRc SINE MIR -80 188 118 1 1473 728 146 147 35 chr4 116462115 116462285 -39167835 - B2_Mm2 SINE B2 -5 190 2 1 1473 269 200 0 0 chr4 116462526 116462576 -39167544 + MIRb SINE MIR 161 210 -58 1 1473 1353 76 16 11 chr4 116462581 116462767 -39167353 + B2_Mm2 SINE B2 6 192 -3 1 1473 779 156 293 0 chr4 116462850 116463017 -39167103 - B3 SINE B2 0 216 1 1 1473 1323 94 15 15 chr4 116463083 116463278 -39166842 - B2_Mm2 SINE B2 0 195 1 1 1473 351 260 154 0 chr4 116463289 116463393 -39166727 - PB1D9 SINE Alu 0 120 1 1 1473 1102 108 0 171 chr4 116463424 116463658 -39166462 + B2_Mm2 SINE B2 2 195 0 1 1473 29 0 0 0 chr4 116463721 116463750 -39166370 + AT_rich Low_complexity Low_complexity 1 29 0 1 1473 865 237 48 0 chr4 116463758 116463944 -39166176 + B3 SINE B2 1 195 -21 1 1473 22 0 0 0 chr4 116463951 116463973 -39166147 + AT_rich Low_complexity Low_complexity 1 22 0 1 1473 328 286 114 0 chr4 116463978 116464083 -39166037 + PB1D10 SINE Alu 1 117 0 1 1473 198 0 0 0 chr4 116464363 116464385 -39165735 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1473 1175 77 17 40 chr4 116464412 116464587 -39165533 + B2_Mm2 SINE B2 25 195 0 1 1473 216 86 0 0 chr4 116464882 116464917 -39165203 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1473 444 232 35 9 chr4 116465092 116465205 -39164915 + ID_B1 SINE B4 107 222 -2 1 1473 21 0 0 0 chr4 116465627 116465648 -39164472 + GC_rich Low_complexity Low_complexity 1 21 0 1 1473 763 135 62 16 chr4 116465657 116465785 -39164335 - B1_Mus1 SINE Alu -12 136 3 1 1473 869 215 88 5 chr4 116465923 116466115 -39164005 - B3 SINE B2 -6 210 3 1 1473 218 122 0 146 chr4 116466399 116466447 -39163673 + PB1D9 SINE Alu 14 54 -66 1 1473 602 72 0 0 chr4 116466449 116466532 -39163588 - ORR1A2 LTR MaLR -244 83 1 1 1473 240 314 65 28 chr4 116466574 116466682 -39163438 + PB1D9 SINE Alu 3 114 -6 1 1473 1172 42 7 0 chr4 116466688 116466830 -39163290 + B1_Mus1 SINE Alu 5 147 -1 1 1473 425 296 97 34 chr4 116466970 116467145 -39162975 + B2_Mm2 SINE B2 6 191 -4 1 1473 278 273 125 0 chr4 116467165 116467253 -39162867 - B1F SINE Alu -44 105 7 1 1473 303 288 0 59 chr4 116467202 116467287 -39162833 - B4A SINE B4 -150 142 63 1 1473 248 329 0 0 chr4 116467386 116467468 -39162652 - ID4_ SINE ID 0 83 2 1 1473 432 339 25 0 chr4 116467471 116467592 -39162528 - B1_Mus2 SINE Alu -22 125 2 1 1473 233 145 0 52 chr4 116467593 116467655 -39162465 + T-rich Low_complexity Low_complexity 1 58 0 1 1473 1439 43 31 31 chr4 116467655 116467847 -39162273 - B2_Mm2 SINE B2 -2 193 2 1 1473 208 147 43 14 chr4 116467847 116467858 -39162262 + (TTG)n Simple_repeat Simple_repeat 1 12 0 1 1473 1007 137 211 0 chr4 116467858 116468033 -39162087 - B3 SINE B2 -4 212 1 1 1473 208 147 43 14 chr4 116468033 116468040 -39162080 + (TTG)n Simple_repeat Simple_repeat 3 9 0 1 1473 180 77 0 0 chr4 116468049 116468075 -39162045 + (CATA)n Simple_repeat Simple_repeat 4 29 0 1 1473 22 0 0 0 chr4 116468083 116468105 -39162015 + AT_rich Low_complexity Low_complexity 1 22 0 1 1473 1238 34 0 7 chr4 116468115 116468263 -39161857 + B1_Mus2 SINE Alu 1 147 0 1 1473 1243 93 32 16 chr4 116468269 116468425 -39161695 + B2_Mm1a SINE B2 4 160 -33 1 1473 387 0 0 0 chr4 116468425 116468468 -39161652 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1473 1243 93 32 16 chr4 116468468 116468497 -39161623 + B2_Mm1a SINE B2 161 192 -1 1 1473 478 220 133 17 chr4 116468538 116468658 -39161462 + RSINE1 SINE B4 11 144 -21 1 1473 405 0 0 0 chr4 116468662 116468707 -39161413 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1473 359 269 9 103 chr4 116468722 116468838 -39161282 + PB1D10 SINE Alu 5 109 -8 1 1473 668 216 57 14 chr4 116468905 116469046 -39161074 - B1_Mur2 SINE Alu 0 149 3 1 1473 579 96 0 0 chr4 116469951 116470034 -39160086 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1473 797 0 566 0 chr4 116470046 116470168 -39159952 + B2_Mm1a SINE B2 2 192 -1 1 1473 275 300 29 0 chr4 116470375 116470445 -39159675 - ID4_ SINE ID -9 74 3 1 1473 330 87 0 0 chr4 116470641 116470687 -39159433 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 1473 647 179 9 0 chr4 116470704 116470810 -39159310 - B1_Mur4 SINE Alu -43 107 1 1 1473 1221 48 7 0 chr4 116470911 116471057 -39159063 + B1_Mus1 SINE Alu 2 148 0 1 1473 230 244 64 16 chr4 116471057 116471182 -39158938 + ORR1B1-int LTR MaLR 616 746 -763 1 1473 394 252 22 59 chr4 116471076 116471094 -39159026 + ID_B1 SINE B4 78 207 -17 1 1473 749 111 43 0 chr4 116471094 116471211 -39158909 + B1_Mur3 SINE Alu 11 132 -17 1 1473 186 128 0 0 chr4 116471218 116471257 -39158863 + (TGGGGG)n Simple_repeat Simple_repeat 4 42 0 1 1473 236 302 124 23 chr4 116471275 116471286 -39158834 + B1_Mur1 SINE Alu 23 68 -80 1 1473 396 147 107 0 chr4 116471286 116471361 -39158759 + ID_B1 SINE B4 113 195 -29 1 1473 236 302 124 23 chr4 116471361 116471372 -39158748 + B1_Mur1 SINE Alu 69 127 -21 1 1473 496 203 126 8 chr4 116471410 116471529 -39158591 + B1_Mur1 SINE Alu 3 135 -14 1 1473 1683 36 0 0 chr4 116471975 116472167 -39157953 + B2_Mm1t SINE B2 1 192 -1 1 1473 983 75 15 0 chr4 116472339 116472472 -39157648 + URR1B DNA MER1_type 86 220 -5 1 1473 443 227 89 25 chr4 116472472 116472492 -39157628 - CYRA11_Mm Unknown Y-chromosome -302 310 148 1 1473 854 271 100 55 chr4 116472485 116472794 -39157326 - MT2B LTR ERVL -26 575 253 1 1473 529 203 40 63 chr4 116472794 116472920 -39157200 - MT2B LTR ERVL -410 123 1 1 1473 221 287 82 57 chr4 116472920 116473039 -39157081 - B1F1 SINE Alu -18 131 10 1 1473 230 205 0 0 chr4 116473388 116473427 -39156693 + B1F2 SINE Alu 1 39 -110 1 1473 384 270 60 0 chr4 116473441 116473541 -39156579 + PB1D9 SINE Alu 4 109 -11 1 1473 308 268 450 27 chr4 116473560 116473706 -39156414 + ID_B1 SINE B4 2 208 -16 1 1473 354 328 102 0 chr4 116476847 116476975 -39153145 - B1F SINE Alu -7 142 2 1 1473 582 219 42 8 chr4 116477923 116478043 -39152077 + L2a LINE L2 3298 3421 -5 1 1473 397 191 79 0 chr4 116479649 116479738 -39150382 + PB1D10 SINE Alu 21 116 -1 1 1473 706 175 65 7 chr4 116480857 116480995 -39149125 + B1_Mus2 SINE Alu 2 147 0 1 1473 224 224 41 0 chr4 116481006 116481055 -39149065 - ID_B1 SINE B4 -93 131 81 1 1473 1286 34 0 0 chr4 116481076 116481223 -39148897 - B1_Mm SINE Alu 0 147 1 1 1473 1042 56 7 65 chr4 116481252 116481405 -39148715 + B1_Mus1 SINE Alu 5 148 0 1 1473 223 343 64 18 chr4 116481572 116481624 -39148496 - ID_B1 SINE B4 -104 120 6 1 1473 230 259 69 0 chr4 116481624 116481682 -39148438 - ID4_ SINE ID -16 67 6 1 1473 663 194 93 0 chr4 116481777 116481916 -39148204 - B3 SINE B2 -6 210 59 1 1473 339 200 181 48 chr4 116482122 116482227 -39147893 + PB1D9 SINE Alu 2 120 0 1 1473 258 241 45 67 chr4 116482275 116482364 -39147756 - RMER20B LTR ERVK -49 578 492 1 1473 615 229 165 42 chr4 116482375 116482635 -39147485 - RMER20B LTR ERVK -214 413 122 1 1473 756 190 14 14 chr4 116483010 116483154 -39146966 - B1_Mur1 SINE Alu -1 148 5 1 1473 553 155 198 0 chr4 116483191 116483307 -39146813 - B1_Mur3 SINE Alu -6 143 5 1 1473 805 196 14 0 chr4 116483421 116483569 -39146551 - B1_Mur4 SINE Alu 0 150 1 1 1473 1777 202 106 22 chr4 116483699 116484113 -39146007 - RLTR18B LTR ERVK -63 449 1 1 1473 430 272 26 17 chr4 116484240 116484356 -39145764 - ID_B1 SINE B4 -4 220 104 1 1473 229 329 41 0 chr4 116484292 116484365 -39145755 - PB1D7 SINE Alu -31 89 14 1 1473 1276 182 103 101 chr4 116485400 116485748 -39144372 - ORR1C1 LTR MaLR -12 366 18 1 1473 1567 117 74 0 chr4 116485752 116486008 -39144112 - MTB_Mm LTR MaLR -132 275 1 1 1473 2380 166 98 19 chr4 116486056 116486536 -39143584 - MT2A LTR ERVL 0 533 16 1 1473 535 244 197 11 chr4 116486608 116486786 -39143334 + B3 SINE B2 2 212 -4 1 1473 574 278 6 30 chr4 116487548 116487715 -39142405 + RSINE1 SINE B4 3 165 0 1 1473 510 237 59 0 chr4 116487880 116487998 -39142122 + ID_B1 SINE B4 85 209 -15 1 1473 500 245 68 54 chr4 116487998 116488024 -39142096 + B1F SINE Alu 4 149 0 1 1473 281 261 0 80 chr4 116488026 116488101 -39142019 + B3A SINE B2 63 131 -67 1 1473 1213 68 0 0 chr4 116488733 116488879 -39141241 - B1_Mus2 SINE Alu -1 146 1 1 1473 306 238 104 146 chr4 116491336 116491382 -39138738 - B2_Mm2 SINE B2 0 195 149 1 1473 216 97 0 0 chr4 116491382 116491413 -39138707 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1473 494 238 104 146 chr4 116491413 116491558 -39138562 - B3A SINE B2 -41 157 12 1 1473 321 274 77 46 chr4 116491562 116491707 -39138413 - ID_B1 SINE B4 -42 182 2 1 1473 305 152 78 122 chr4 116494490 116494580 -39135540 - L1M2 LINE L1 -3318 2825 2740 1 1473 313 279 92 67 chr4 116495139 116495189 -39134931 + MIRb SINE MIR 26 71 -197 1 1473 1038 103 0 7 chr4 116495189 116495325 -39134795 + B1_Mus2 SINE Alu 2 137 -10 1 1473 245 29 29 0 chr4 116495325 116495359 -39134761 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1473 313 279 92 67 chr4 116495368 116495436 -39134684 + MIRb SINE MIR 72 147 -121 1 1473 1182 51 0 0 chr4 116495446 116495583 -39134537 + B1_Mm SINE Alu 2 138 -9 1 1473 216 0 0 0 chr4 116495583 116495607 -39134513 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1473 240 294 14 56 chr4 116495967 116496039 -39134081 - ID4_ SINE ID -13 70 2 1 1473 543 151 0 0 chr4 116496378 116496471 -39133649 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1473 1414 73 10 5 chr4 116496731 116496924 -39133196 - B2_Mm2 SINE B2 0 195 2 1 1473 702 216 125 36 chr4 116497664 116497856 -39132264 - ID_B1 SINE B4 -15 209 1 1 1473 571 183 119 22 chr4 116497877 116498011 -39132109 - B1_Mus1 SINE Alu 0 148 2 1 1473 233 221 23 105 chr4 116498147 116498233 -39131887 + ID4_ SINE ID 2 80 -3 1 1473 441 246 71 21 chr4 116498238 116498379 -39131741 + L1MB3 LINE L1 5892 6039 -144 1 1473 484 237 21 0 chr4 116498419 116498516 -39131604 - PB1D7 SINE Alu -2 118 20 1 1473 223 206 215 31 chr4 116498544 116498609 -39131511 - RSINE1 SINE B4 0 165 89 1 1473 1143 63 0 0 chr4 116498686 116498821 -39131299 + B1_Mus2 SINE Alu 2 136 -11 1 1473 333 0 0 0 chr4 116498821 116498858 -39131262 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1 1473 210 71 0 0 chr4 116498926 116498954 -39131166 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1473 238 311 146 8 chr4 116499025 116499148 -39130972 + L2 LINE L2 1964 2103 -1316 1 1473 540 243 0 26 chr4 116499225 116499339 -39130781 - ID_B1 SINE B4 -3 221 111 1 1473 467 260 8 54 chr4 116499870 116500000 -39130120 - RSINE1 SINE B4 -1 164 41 1 1473 1192 29 0 0 chr4 116500153 116500290 -39129830 - B1_Mm SINE Alu -9 138 2 1 1473 255 269 40 122 chr4 116500869 116501017 -39129103 - B1F SINE Alu -12 137 2 2 1473 618 210 20 9 chr4 116501009 116501151 -39128969 + B1_Mur1 SINE Alu 1 147 -1 3 1473 252 0 0 0 chr4 116501352 116501380 -39128740 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1473 287 161 48 0 chr4 116501384 116501446 -39128674 - RSINE1 SINE B4 -41 124 60 5 1473 1621 37 11 0 chr4 116501466 116501656 -39128464 - B2_Mm1a SINE B2 0 193 2 6 1473 228 135 0 0 chr4 116501862 116501899 -39128221 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 7 1473 689 186 72 8 chr4 116501899 116502024 -39128096 - B1_Mur4 SINE Alu -13 137 5 8 1473 495 222 19 0 chr4 116502024 116502132 -39127988 + MTD LTR MaLR 302 411 -8 9 1473 294 269 75 0 chr4 116502137 116502230 -39127890 + MIRb SINE MIR 93 192 -76 1 1473 300 351 8 27 chr4 116502331 116502507 -39127613 - MIR SINE MIR -91 171 8 1 1473 620 183 76 8 chr4 116503245 116503377 -39126743 + B1_Mur2 SINE Alu 1 141 -8 1 1473 219 36 0 0 chr4 116503378 116503406 -39126714 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1473 583 288 149 27 chr4 116503814 116504110 -39126010 - MLT1A LTR MaLR 0 374 43 1 1473 1032 114 0 0 chr4 116504484 116504642 -39125478 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 1473 310 331 48 27 chr4 116504644 116504790 -39125330 - RSINE1 SINE B4 -14 151 3 1 1473 348 241 51 0 chr4 116505000 116505079 -39125041 - ID_B1 SINE B4 -3 221 139 1 1473 355 138 175 0 chr4 116505472 116505552 -39124568 - B1_Mur4 SINE Alu -13 137 44 1 1473 1204 61 0 0 chr4 116506290 116506437 -39123683 - B1_Mus1 SINE Alu 0 148 2 1 1473 865 182 123 15 chr4 116506479 116506674 -39123446 + B3 SINE B2 1 216 0 2 1473 919 150 14 0 chr4 116506682 116506822 -39123298 + B1_Mur4 SINE Alu 3 144 -6 2 1473 378 0 0 0 chr4 116506824 116506866 -39123254 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 1473 866 161 160 35 chr4 116506888 116507088 -39123032 + URR1B DNA MER1_type 1 225 0 2 1473 686 244 115 34 chr4 116507444 116507652 -39122468 + B4A SINE B4 2 226 -66 2 1473 512 266 31 15 chr4 116507675 116507805 -39122315 + B3 SINE B2 85 216 0 2 1473 303 263 53 0 chr4 116507958 116508034 -39122086 + MER58A DNA MER1_type 1 80 -144 2 1473 279 0 0 0 chr4 116508066 116508097 -39122023 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1473 1081 82 7 14 chr4 116508097 116508245 -39121875 - B1_Mus1 SINE Alu 0 148 2 2 1473 316 272 10 42 chr4 116508399 116508495 -39121625 + MER5A1 DNA MER1_type 73 165 -1 2 1473 298 281 98 38 chr4 116508839 116508972 -39121148 - MIR SINE MIR -63 199 59 3 1473 359 191 192 31 chr4 116509394 116509524 -39120596 - MTEa LTR MaLR -47 332 182 3 1473 984 88 14 0 chr4 116509549 116509696 -39120424 + B2_Mm2 SINE B2 2 150 -45 3 1473 495 0 0 0 chr4 116509731 116509786 -39120334 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 3 1473 443 76 624 11 chr4 116509802 116509895 -39120225 + B1_Mur4 SINE Alu 1 150 0 3 1473 364 124 332 8 chr4 116509946 116510067 -39120053 + B2_Mm2 SINE B2 50 186 -7 3 1473 393 250 23 91 chr4 116510092 116510224 -39119896 - MTEa LTR MaLR -243 136 14 3 1473 1204 36 0 0 chr4 116510300 116510440 -39119680 + B1_Mus2 SINE Alu 1 140 -7 3 1473 186 43 0 0 chr4 116510443 116510466 -39119654 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1473 1114 89 0 0 chr4 116510611 116510757 -39119363 + B1_Mus2 SINE Alu 2 147 0 3 1473 225 0 0 0 chr4 116510757 116510782 -39119338 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1473 337 256 48 57 chr4 116510786 116510910 -39119210 + MER2 DNA MER2_type 200 322 -23 4 1473 707 165 75 8 chr4 116510969 116511103 -39119017 + B1_Mus1 SINE Alu 3 145 -3 4 1473 748 221 0 13 chr4 116511149 116511300 -39118820 - B1_Mur1 SINE Alu 0 149 1 4 1473 417 254 121 47 chr4 116511331 116511521 -39118599 - B3 SINE B2 -12 204 1 4 1473 476 365 52 41 chr4 116511989 116512334 -39117786 - LTR16C LTR ERVL -58 431 83 4 1473 22 0 0 0 chr4 116512460 116512482 -39117638 + AT_rich Low_complexity Low_complexity 1 22 0 4 1473 1020 102 0 13 chr4 116513117 116513266 -39116854 - B1_Mus1 SINE Alu 0 148 2 4 1473 291 238 0 144 chr4 116513287 116513405 -39116715 + MT2B LTR ERVL 157 257 -344 4 1473 573 241 0 0 chr4 116513301 116513413 -39116707 + B1_Mur2 SINE Alu 1 112 -37 4 1473 369 0 0 0 chr4 116513419 116513460 -39116660 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1473 609 264 13 26 chr4 116513463 116513615 -39116505 - RSINE1 SINE B4 -13 152 3 5 1473 207 0 0 0 chr4 116513766 116513789 -39116331 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1473 196 159 65 104 chr4 116514085 116514162 -39115958 + L2b LINE L2 3246 3319 -56 5 1473 940 238 46 14 chr4 116514180 116514397 -39115723 - ID_B1 SINE B4 0 224 1 5 1473 1023 70 7 0 chr4 116514963 116515105 -39115015 - B1_Mus1 SINE Alu 0 148 6 5 1473 344 252 15 118 chr4 116515453 116515490 -39114630 + MT2B LTR ERVL 130 152 -449 5 1473 557 84 52 14 chr4 116515490 116515590 -39114530 + B1_Mus1 SINE Alu 1 120 0 5 1473 974 79 14 0 chr4 116515808 116515948 -39114172 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 5 1473 567 193 98 25 chr4 116515958 116516080 -39114040 - B1_Mus1 SINE Alu -17 131 1 5 1473 233 254 45 0 chr4 116516090 116516157 -39113963 + L1M5 LINE L1 5086 5155 -991 5 1473 2355 95 22 118 chr4 116516239 116516703 -39113417 + RMER16 LTR ERVK 113 531 -2 6 1473 216 195 0 0 chr4 116516845 116516886 -39113234 + B3A SINE B2 2 42 -156 6 1473 711 124 57 18 chr4 116516873 116517008 -39113112 + B1_Mur1 SINE Alu 11 148 -1 6 1473 549 267 19 5 chr4 116517017 116517185 -39112935 + B3A SINE B2 27 187 -29 6 1473 336 294 205 34 chr4 116517218 116517545 -39112575 - MLT1C LTR MaLR -3 464 82 6 1473 620 206 0 7 chr4 116517546 116517688 -39112432 + T-rich Low_complexity Low_complexity 3 143 0 6 1473 1134 82 0 0 chr4 116517689 116517835 -39112285 - B1_Mus2 SINE Alu -1 146 1 6 1473 930 316 54 54 chr4 116517908 116518138 -39111982 - MLT1C-int LTR MaLR 0 1371 1151 6 1473 207 0 0 0 chr4 116518138 116518161 -39111959 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1473 930 324 61 68 chr4 116518161 116518548 -39111572 - MLT1C-int LTR MaLR -227 1262 876 6 1473 841 166 189 22 chr4 116518571 116518756 -39111364 - B3 SINE B2 0 216 1 6 1473 316 329 122 77 chr4 116518757 116518807 -39111313 - MLT1C-int LTR MaLR -530 841 804 6 1473 1125 45 0 0 chr4 116518807 116518941 -39111179 + B1_Mus2 SINE Alu 2 135 -12 6 1473 396 0 0 0 chr4 116518942 116518986 -39111134 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1473 316 329 122 77 chr4 116518986 116519154 -39110966 - MLT1C-int LTR MaLR -568 803 611 6 1473 353 252 50 15 chr4 116519186 116519309 -39110811 + B1F1 SINE Alu 4 128 -20 7 1473 486 246 37 0 chr4 116519335 116519469 -39110651 - MLT1C-int LTR MaLR -780 591 453 6 1473 189 0 0 0 chr4 116519493 116519514 -39110606 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1473 1189 68 0 0 chr4 116519514 116519660 -39110460 - B1_Mm SINE Alu 0 147 2 7 1473 816 129 28 7 chr4 116519753 116519894 -39110226 + B1_Mur3 SINE Alu 6 149 0 7 1473 927 131 23 0 chr4 116519896 116519941 -39110179 + polypurine Low_complexity Low_complexity 2 47 0 7 1473 1011 85 0 0 chr4 116519941 116520070 -39110050 + B1_Mus1 SINE Alu 1 129 -19 7 1473 927 131 23 0 chr4 116520070 116520199 -39109921 + polypurine Low_complexity Low_complexity 48 179 0 7 1473 411 41 0 0 chr4 116520199 116520248 -39109872 + (GAAAA)n Simple_repeat Simple_repeat 4 52 0 7 1473 266 26 53 0 chr4 116520853 116520891 -39109229 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 7 1473 575 264 0 0 chr4 116520913 116521042 -39109078 - B1F2 SINE Alu -16 133 5 7 1473 289 299 44 33 chr4 116521128 116521232 -39108888 + B1F1 SINE Alu 2 106 -14 8 1473 597 64 0 0 chr4 116521233 116521311 -39108809 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 8 1473 1312 101 32 0 chr4 116521320 116521509 -39108611 - B2_Mm2 SINE B2 0 195 1 8 1473 609 61 0 0 chr4 116521513 116521595 -39108525 + (TCC)n Simple_repeat Simple_repeat 3 84 0 8 1473 195 42 0 0 chr4 116521595 116521619 -39108501 + (CTG)n Simple_repeat Simple_repeat 2 25 0 8 1473 703 150 92 23 chr4 116521634 116521764 -39108356 - B1_Mus2 SINE Alu -8 139 1 8 1473 363 316 123 33 chr4 116521767 116522134 -39107986 - ERVL-E-int LTR ERVL -947 4767 4357 8 184 789 263 61 91 chr4 116522814 116523111 -39107009 + B4A SINE B4 1 288 -4 8 1474 234 0 0 0 chr4 116523133 116523159 -39106961 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1474 245 163 23 0 chr4 116523218 116523261 -39106859 + PB1D7 SINE Alu 8 51 -69 8 1474 342 0 0 0 chr4 116523301 116523339 -39106781 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1474 448 285 58 39 chr4 116523599 116523807 -39106313 - L1MD3 LINE L1 -30 7965 7754 9 1474 1361 75 32 0 chr4 116523827 116524013 -39106107 - B2_Mm1t SINE B2 0 193 2 9 1474 465 295 58 42 chr4 116524018 116524209 -39105911 + L1MD3 LINE L1 7552 7745 -250 9 1474 312 48 0 0 chr4 116524239 116524281 -39105839 + (CATA)n Simple_repeat Simple_repeat 3 44 0 9 1474 225 0 0 0 chr4 116524281 116524306 -39105814 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 9 1474 1683 31 0 0 chr4 116524360 116524552 -39105568 - B2_Mm1t SINE B2 0 193 2 9 1474 1034 114 228 0 chr4 116524612 116524796 -39105324 + URR1A DNA MER1_type 1 226 0 9 1474 272 314 42 84 chr4 116524804 116524971 -39105149 - L1MD3 LINE L1 -519 7476 7317 9 1474 271 199 69 90 chr4 116526425 116526446 -39103674 - YREP_Mm Unknown Unknown -1489 323 238 9 1474 477 188 116 0 chr4 116526446 116526558 -39103562 + ID_B1 SINE B4 87 211 -13 9 1474 271 199 69 90 chr4 116526558 116526569 -39103551 - YREP_Mm Unknown Unknown -1489 237 183 9 1474 248 286 0 41 chr4 116526756 116526829 -39103291 + B4 SINE B4 77 146 -146 1 1474 688 264 17 11 chr4 116527735 116527882 -39102238 + B3A SINE B2 2 150 -48 1 1474 1089 128 0 0 chr4 116527882 116528062 -39102058 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1474 688 264 17 11 chr4 116528062 116528094 -39102026 + B3A SINE B2 151 182 -16 1 1474 492 128 0 0 chr4 116528094 116528172 -39101948 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1474 416 284 130 11 chr4 116528202 116528387 -39101733 - B3 SINE B2 0 216 10 1 1474 1217 22 0 0 chr4 116528441 116528578 -39101542 - B1_Mm SINE Alu -10 137 1 1 1474 504 32 0 0 chr4 116528676 116528738 -39101382 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1474 387 60 0 0 chr4 116529498 116529548 -39100572 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1474 1224 41 0 0 chr4 116529548 116529694 -39100426 - B1_Mm SINE Alu -1 146 1 1 1474 843 215 15 40 chr4 116530245 116530444 -39099676 + B3A SINE B2 5 198 0 1 1474 579 144 0 0 chr4 116530444 116530541 -39099579 + (GA)n Simple_repeat Simple_repeat 1 97 0 1 1474 663 13 0 0 chr4 116530541 116530617 -39099503 + (GAA)n Simple_repeat Simple_repeat 3 78 0 1 1474 936 147 0 32 chr4 116530622 116530777 -39099343 + B1_Mur4 SINE Alu 1 150 0 1 1474 609 62 54 0 chr4 116530777 116530889 -39099231 + (GGA)n Simple_repeat Simple_repeat 3 120 0 1 1474 1438 85 5 0 chr4 116530910 116531098 -39099022 + B2_Mm1t SINE B2 2 190 -3 1 1474 348 24 0 0 chr4 116531293 116531334 -39098786 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1474 234 0 0 0 chr4 116531422 116531448 -39098672 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1474 936 156 0 0 chr4 116531450 116531585 -39098535 - B1_Mur4 SINE Alu -13 137 3 1 1474 1088 183 0 82 chr4 116531641 116531873 -39098247 + URR1B DNA MER1_type 13 225 0 1 1474 1449 185 66 6 chr4 116532414 116532768 -39097352 + MTD LTR MaLR 5 379 0 1 1474 191 36 36 0 chr4 116532997 116533025 -39097095 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1474 491 300 164 60 chr4 116533179 116533376 -39096744 - MLT1A0 LTR MaLR 0 365 139 1 1474 1374 86 16 0 chr4 116533376 116533563 -39096557 + B2_Mm2 SINE B2 2 191 -4 1 1474 491 300 164 60 chr4 116533563 116533634 -39096486 - MLT1A0 LTR MaLR -227 138 69 1 1474 636 250 39 7 chr4 116533648 116533801 -39096319 - RSINE1 SINE B4 -4 161 4 1 1474 1747 10 0 5 chr4 116533860 116534054 -39096066 - B2_Mm1a SINE B2 0 193 1 1 1474 335 325 87 24 chr4 116535265 116535473 -39094647 + ERVL-int LTR ERVL 2397 2617 -3140 1 1474 992 206 60 0 chr4 116535485 116535684 -39094436 + B3 SINE B2 1 211 -5 1 1474 527 233 58 0 chr4 116536280 116536400 -39093720 - RSINE1 SINE B4 -33 132 6 1 1474 322 251 12 21 chr4 116536429 116536532 -39093588 - B4 SINE B4 -14 278 81 1 1474 1320 226 131 11 chr4 116536532 116536898 -39093222 - MTC LTR MaLR 0 421 12 1 1474 720 280 19 24 chr4 116536945 116537157 -39092963 - B4 SINE B4 -80 212 2 1 1474 1928 171 11 78 chr4 116537597 116538048 -39092072 + RMER16 LTR ERVK 113 533 0 1 1474 1514 78 0 5 chr4 116538080 116538273 -39091847 + B2_Mm2 SINE B2 1 192 -3 1 1474 713 0 11 11 chr4 116539163 116539255 -39090865 - MTB LTR MaLR 0 400 309 1 1474 718 39 87 0 chr4 116539255 116539359 -39090761 - LTRIS5 LTR ERV1 -333 114 2 1 1474 509 303 16 22 chr4 116539359 116539541 -39090579 + L1ME3 LINE L1 5978 6158 -4 1 1474 869 207 0 7 chr4 116539783 116539929 -39090191 - B1_Mur2 SINE Alu -4 145 1 1 1474 1352 69 23 0 chr4 116539985 116540160 -39089960 + B2_Mm2 SINE B2 3 181 -14 1 1474 359 111 280 27 chr4 116540172 116540282 -39089838 + B2_Mm2 SINE B2 46 188 -7 1 1474 500 45 0 0 chr4 116540492 116540559 -39089561 - L1_Mus2 LINE L1 0 6566 6500 1 1474 375 23 0 0 chr4 116540649 116540693 -39089427 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1474 856 221 15 26 chr4 116540739 116540934 -39089186 + B4 SINE B4 1 193 -99 1 1474 306 243 0 0 chr4 116540998 116541068 -39089052 + Lx8 LINE L1 6762 6831 -642 1 1474 1219 130 17 0 chr4 116541245 116541422 -39088698 + B2_Mm2 SINE B2 2 181 -14 1 1474 1236 41 0 0 chr4 116541429 116541576 -39088544 - B1_Mus2 SINE Alu 0 147 1 1 1474 770 339 101 13 chr4 116541605 116542062 -39088058 + Lx8 LINE L1 6898 7394 -79 1 1474 550 282 44 39 chr4 116542142 116542345 -39087775 + B3A SINE B2 12 215 -1 1 1474 287 218 0 0 chr4 116542406 116542461 -39087659 + B4 SINE B4 215 269 -23 1 1474 506 86 12 0 chr4 116542462 116542543 -39087577 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1474 1259 151 73 70 chr4 116542580 116542880 -39087240 + MTB_Mm LTR MaLR 1 301 -106 1 1474 180 0 0 0 chr4 116542898 116542918 -39087202 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1474 586 73 0 0 chr4 116542949 116543031 -39087089 - B2_Mm2 SINE B2 -112 83 2 1 1474 682 106 43 17 chr4 116543031 116543145 -39086975 + MTB_Mm LTR MaLR 305 421 0 1 1474 1132 75 0 13 chr4 116544285 116544434 -39085686 - B1_Mus1 SINE Alu 0 148 2 1 1474 268 270 174 23 chr4 116544541 116544673 -39085447 + MLT1F1 LTR MaLR 66 263 -316 1 1474 333 296 118 7 chr4 116544687 116544823 -39085297 + MLT1F1 LTR MaLR 392 542 -27 1 1474 560 169 83 17 chr4 116545140 116545260 -39084860 - B1_Mur4 SINE Alu 0 150 23 1 1474 619 67 67 0 chr4 116545376 116545466 -39084654 - B2_Mm1t SINE B2 -96 97 2 1 1474 314 275 110 0 chr4 116545467 116545576 -39084544 - RSINE1 SINE B4 -42 123 3 1 1474 714 267 50 71 chr4 116545604 116545650 -39084470 - B4A SINE B4 0 292 255 1 1474 387 0 0 0 chr4 116545650 116545693 -39084427 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1474 714 267 50 71 chr4 116545693 116545884 -39084236 - B4A SINE B4 -38 254 60 1 1474 685 243 62 83 chr4 116545886 116546079 -39084041 - B3 SINE B2 -1 194 6 1 1474 1169 82 0 0 chr4 116546156 116546303 -39083817 - B1_Mus1 SINE Alu 0 148 2 1 1474 1298 106 21 5 chr4 116546362 116546551 -39083569 - B2_Mm2 SINE B2 -1 194 3 1 1474 1512 53 16 11 chr4 116546556 116546745 -39083375 - B2_Mm2 SINE B2 -3 192 3 1 1474 2720 36 53 18 chr4 116547645 116547985 -39082135 + L1_Mus1 LINE L1 6216 6567 0 1 1474 201 197 29 29 chr4 116547992 116548060 -39082060 + A-rich Low_complexity Low_complexity 4 71 0 1 1474 23 33 0 0 chr4 116549802 116549832 -39080288 + GC_rich Low_complexity Low_complexity 1 30 0 1 1474 39 60 0 0 chr4 116550172 116550239 -39079881 + GC_rich Low_complexity Low_complexity 1 67 0 1 1474 57 79 0 0 chr4 116550414 116550541 -39079579 + GC_rich Low_complexity Low_complexity 1 127 0 1 1474 486 0 0 0 chr4 116550887 116550941 -39079179 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1474 24 0 0 0 chr4 116551920 116551944 -39078176 + AT_rich Low_complexity Low_complexity 1 24 0 1 1474 411 200 0 0 chr4 116552288 116552363 -39077757 - ID4_ SINE ID -8 75 1 1 1474 938 249 5 0 chr4 116552992 116553205 -39076915 - B3 SINE B2 0 216 3 1 1474 189 74 0 0 chr4 116553210 116553237 -39076883 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1474 642 218 24 0 chr4 116553237 116553361 -39076759 - B1_Mus1 SINE Alu -11 137 11 1 1474 905 121 0 6 chr4 116553397 116553572 -39076548 + (TTC)n Simple_repeat Simple_repeat 3 176 0 1 1474 342 0 0 0 chr4 116553572 116553610 -39076510 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1474 870 64 24 0 chr4 116553610 116553735 -39076385 - B1_Mus1 SINE Alu -20 128 1 1 1474 644 242 26 0 chr4 116553788 116553941 -39076179 - B3A SINE B2 -41 157 1 1 1474 198 103 0 0 chr4 116553947 116553976 -39076144 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1474 383 255 51 0 chr4 116553985 116554083 -39076037 + PB1D10 SINE Alu 15 117 0 1 1474 1410 63 15 50 chr4 116555015 116555215 -39074905 - B2_Mm2 SINE B2 -2 193 1 1 1474 667 252 0 27 chr4 116555231 116555378 -39074742 - B1_Mur1 SINE Alu -6 143 1 1 1474 524 300 33 0 chr4 116555412 116555562 -39074558 - RSINE1 SINE B4 0 165 11 1 1474 207 0 0 0 chr4 116555562 116555585 -39074535 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1474 5363 117 32 48 chr4 116555598 116556179 -39073941 - Lx3B LINE L1 0 6973 6390 1 1474 1194 60 149 0 chr4 116556179 116556197 -39073923 - B2_Mm1t SINE B2 0 193 176 1 1474 524 15 29 0 chr4 116556197 116556265 -39073855 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 1 1474 1194 60 149 0 chr4 116556265 116556414 -39073706 - B2_Mm1t SINE B2 -18 175 2 1 1474 5342 116 32 48 chr4 116556414 116556426 -39073694 - Lx3B LINE L1 -584 6389 6389 1 1474 1145 82 0 0 chr4 116556426 116556573 -39073547 - B1_Mus1 SINE Alu 0 148 2 1 1474 5342 116 32 48 chr4 116556573 116556871 -39073249 - Lx3B LINE L1 -584 6389 6095 1 1474 2913 81 7 0 chr4 116556872 116557293 -39072827 - L1_Mur1 LINE L1 -1546 4340 3917 1 1474 278 256 12 37 chr4 116557293 116557374 -39072746 + PB1 SINE Alu 41 119 -8 1 1474 207 179 0 0 chr4 116557378 116557417 -39072703 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 1 1474 1108 171 18 54 chr4 116558088 116558311 -39071809 + URR1B DNA MER1_type 2 216 -9 1 1474 370 227 80 0 chr4 116558300 116558388 -39071732 + ID_B1 SINE B4 130 224 0 1 1474 201 108 0 0 chr4 116558665 116558702 -39071418 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1474 1255 21 0 0 chr4 116558710 116558852 -39071268 - B1_Mus2 SINE Alu -5 142 1 1 1474 1774 177 119 11 chr4 116558867 116559227 -39070893 + MTD LTR MaLR 13 411 -8 1 1474 491 273 0 10 chr4 116559399 116559499 -39070621 - PB1D7 SINE Alu -21 99 1 1 1474 870 152 210 17 chr4 116560801 116560982 -39069138 + B3 SINE B2 1 216 0 1 1474 659 263 59 13 chr4 116561061 116561231 -39068889 - B3A SINE B2 -26 169 1 1 1474 294 347 66 57 chr4 116561243 116561561 -39068559 - Tigger10 DNA Tigger -818 1025 705 1 1474 707 233 62 17 chr4 116561661 116561840 -39068280 - B4 SINE B4 -100 192 6 1 1474 2747 71 66 0 chr4 116561894 116562290 -39067830 - BGLII_Mus LTR ERVK 0 422 1 1 1474 387 211 0 0 chr4 116562300 116562390 -39067730 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1474 463 275 47 63 chr4 116562453 116562643 -39067477 + B3A SINE B2 1 187 -11 2 1474 259 395 21 16 chr4 116562782 116562970 -39067150 + L2 LINE L2 1917 2105 -1314 2 1474 415 141 28 14 chr4 116562987 116563059 -39067061 + RMER15 LTR ERVL 1 73 -502 2 1474 3921 134 43 29 chr4 116563059 116563780 -39066340 - RMER6A LTR ERVK 0 756 26 2 1474 2299 177 108 15 chr4 116563758 116564222 -39065898 + RMER15 LTR ERVL 69 575 0 2 1474 466 220 104 12 chr4 116564229 116564440 -39065680 + L1M3 LINE L1 5226 5466 -712 2 1474 414 228 0 0 chr4 116564515 116564594 -39065526 - ID4_ SINE ID 0 83 5 2 1474 224 30 0 29 chr4 116564604 116564638 -39065482 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2 1474 687 210 25 6 chr4 116564683 116564846 -39065274 + L1M3 LINE L1 5551 5716 -467 2 1474 940 163 72 0 chr4 116564853 116565019 -39065101 + MTD LTR MaLR 1 178 -241 2 1474 251 302 65 122 chr4 116565019 116565148 -39064972 + L1MB7 LINE L1 5959 6092 -92 2 1474 1229 41 0 0 chr4 116565148 116565295 -39064825 + B1_Mus2 SINE Alu 1 147 0 2 1474 251 302 65 122 chr4 116565295 116565395 -39064725 + L1MB7 LINE L1 6093 6175 -9 2 1474 332 318 37 0 chr4 116565495 116565602 -39064518 + MIRb SINE MIR 53 163 -105 2 1474 189 121 0 0 chr4 116565618 116565651 -39064469 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1474 1350 246 179 15 chr4 116565726 116566258 -39063862 - Lx8 LINE L1 -13 7460 6842 2 1474 413 139 12 81 chr4 116566292 116566378 -39063742 + B1_Mm SINE Alu 48 127 -20 2 1474 279 311 58 16 chr4 116566491 116566612 -39063508 - L2a LINE L2 -6 3420 3295 2 1474 272 311 11 43 chr4 116566614 116566708 -39063412 + L2c LINE L2 3226 3316 -71 2 1474 941 182 41 6 chr4 116566778 116566949 -39063171 + MTD LTR MaLR 34 210 -209 2 1474 553 121 164 94 chr4 116566949 116567077 -39063043 + B1_Mur4 SINE Alu 1 137 -13 2 1474 361 155 0 45 chr4 116567088 116567176 -39062944 + CT-rich Low_complexity Low_complexity 1 84 0 2 1474 511 158 319 31 chr4 116567215 116567378 -39062742 + MTD LTR MaLR 196 405 -14 2 1474 1160 36 0 0 chr4 116568021 116568158 -39061962 + B1_Mus2 SINE Alu 1 137 -10 2 1474 306 0 0 0 chr4 116568158 116568192 -39061928 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1474 666 149 17 34 chr4 116568975 116569093 -39061027 + PB1D9 SINE Alu 3 118 -2 2 1474 189 0 0 0 chr4 116569270 116569291 -39060829 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2 1474 350 200 15 0 chr4 116569446 116569511 -39060609 + B3 SINE B2 50 115 -101 2 1474 34 65 0 0 chr4 116569527 116569589 -39060531 + AT_rich Low_complexity Low_complexity 1 62 0 2 1474 1010 228 5 18 chr4 116569608 116569827 -39060293 + B3 SINE B2 1 216 0 2 1474 225 375 73 24 chr4 116570417 116570540 -39059580 - MIRb SINE MIR -84 184 56 2 1474 888 250 132 38 chr4 116570584 116570990 -39059130 + L1ME2z LINE L1 5215 5683 -761 2 1474 1164 115 27 11 chr4 116570990 116571175 -39058945 - B2_Mm2 SINE B2 -6 189 2 2 1474 888 254 173 64 chr4 116571175 116571354 -39058766 + L1ME2z LINE L1 5684 5863 -581 2 1474 552 273 34 27 chr4 116571368 116571515 -39058605 + RSINE1 SINE B4 4 151 -14 2 1474 315 0 0 0 chr4 116571518 116571553 -39058567 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1474 353 227 147 13 chr4 116571568 116571724 -39058396 + L1ME2z LINE L1 5877 6053 -391 2 1474 312 255 167 33 chr4 116571713 116571928 -39058192 - L1M4 LINE L1 -1762 4384 4141 2 1474 792 202 143 0 chr4 116572034 116572202 -39057918 - B3 SINE B2 -24 192 1 2 1474 302 366 87 31 chr4 116572202 116572490 -39057630 + L2 LINE L2 2557 2860 -559 2 1474 30 0 0 0 chr4 116572942 116572972 -39057148 + AT_rich Low_complexity Low_complexity 1 30 0 2 1474 363 286 73 50 chr4 116573076 116573248 -39056872 - L2a LINE L2 0 3426 3204 2 1474 1378 72 0 11 chr4 116573532 116573714 -39056406 - B2_Mm2 SINE B2 -15 180 1 2 1474 214 241 14 100 chr4 116574184 116574275 -39055845 - MIRb SINE MIR -10 258 173 2 1474 480 250 19 0 chr4 116574615 116574719 -39055401 - PB1D10 SINE Alu -8 109 4 2 1474 259 320 0 0 chr4 116574776 116574851 -39055269 - B1F1 SINE Alu -6 143 69 2 1474 984 141 7 0 chr4 116575008 116575157 -39054963 - B1_Mur4 SINE Alu 0 150 1 2 1474 775 77 308 0 chr4 116575262 116575405 -39054715 - B2_Mm1t SINE B2 -5 188 2 2 1474 1069 272 32 11 chr4 116575585 116575867 -39054253 + B4A SINE B4 1 288 -4 2 1474 220 333 118 22 chr4 116575937 116576072 -39054048 - MER5A DNA MER1_type -7 182 35 2 1474 404 127 16 0 chr4 116576209 116576272 -39053848 - B3 SINE B2 -9 207 144 2 1474 582 15 0 0 chr4 116576292 116576359 -39053761 + (TTCTG)n Simple_repeat Simple_repeat 4 70 0 2 1474 747 211 7 7 chr4 116576359 116576492 -39053628 - B1_Mm SINE Alu -11 136 3 2 1474 775 170 50 0 chr4 116576631 116576772 -39053348 + B1_Mus1 SINE Alu 1 148 0 2 1474 766 163 0 114 chr4 116576966 116577132 -39052988 - B1_Mur1 SINE Alu -1 148 2 2 1474 369 265 30 10 chr4 116577241 116577340 -39052780 + U6 snRNA snRNA 1 101 -6 2 1474 202 349 105 20 chr4 116577476 116577628 -39052492 - L2 LINE L2 -843 2576 2412 2 1474 785 144 25 0 chr4 116577788 116577906 -39052214 - B1_Mur4 SINE Alu -7 143 23 2 1474 678 92 211 0 chr4 116578589 116578698 -39051422 + B1_Mus2 SINE Alu 16 147 0 2 1474 408 188 171 8 chr4 116578771 116578900 -39051220 + L1ME2z LINE L1 5492 5641 -803 2 1474 231 298 0 0 chr4 116578999 116579056 -39051064 - B4A SINE B4 -235 57 1 2 1474 530 259 126 26 chr4 116579115 116579418 -39050702 + L1ME2z LINE L1 5714 6051 -393 2 1474 1367 60 27 6 chr4 116579518 116579701 -39050419 + B2_Mm2 SINE B2 1 187 -8 2 1474 188 135 27 0 chr4 116579734 116579771 -39050349 + CT-rich Low_complexity Low_complexity 2 39 0 2 1474 313 337 84 0 chr4 116580273 116580546 -39049574 - L1M5 LINE L1 -3692 2523 2228 2 1474 420 294 129 16 chr4 116580682 116580787 -39049333 - B4A SINE B4 -10 282 217 2 1474 342 0 0 0 chr4 116580787 116580825 -39049295 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1474 420 328 92 38 chr4 116580825 116580998 -39049122 - B4A SINE B4 -76 216 33 2 1474 21 0 0 0 chr4 116581109 116581130 -39048990 + GC_rich Low_complexity Low_complexity 1 21 0 2 1474 212 231 92 126 chr4 116581357 116581476 -39048644 - ID_B1 SINE B4 -102 122 8 2 1474 243 0 0 0 chr4 116581615 116581642 -39048478 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1474 322 261 222 38 chr4 116581645 116581884 -39048236 - L1MB5 LINE L1 -8 6166 5884 2 1474 213 238 0 0 chr4 116582217 116582259 -39047861 + PB1D9 SINE Alu 73 114 -6 2 1474 677 118 181 0 chr4 116582267 116582394 -39047726 + B1_Mur4 SINE Alu 1 150 0 2 1474 216 0 0 0 chr4 116584522 116584546 -39045574 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 2 1474 262 290 0 0 chr4 116584690 116584752 -39045368 + tRNA-Ala-GCA tRNA tRNA 4 65 -10 2 1474 668 82 0 0 chr4 116584752 116584849 -39045271 + Lx3_Mus LINE L1 6620 6716 -293 2 1474 2255 83 3 19 chr4 116584934 116585254 -39044866 + ORR1A2 LTR MaLR 5 319 -8 2 1474 326 242 35 40 chr4 116585274 116585476 -39044644 + L1MEc LINE L1 2229 2429 -3971 2 1474 601 247 31 87 chr4 116585487 116585682 -39044438 + B4 SINE B4 40 223 -69 2 1474 1147 49 0 0 chr4 116585542 116585684 -39044436 + B1_Mus2 SINE Alu 6 147 0 2 1474 364 282 104 6 chr4 116585713 116585877 -39044243 + L1MD2 LINE L1 41 220 -6327 2 1474 235 289 45 84 chr4 116586008 116586163 -39043957 + L1MD2 LINE L1 385 533 -6014 2 1474 353 317 217 0 chr4 116586177 116586297 -39043823 + L1MD2 LINE L1 593 738 -5809 2 1474 211 0 28 56 chr4 116586355 116586391 -39043729 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1474 464 326 34 13 chr4 116586642 116586791 -39043329 + RSINE1 SINE B4 8 159 -6 2 1474 931 121 8 0 chr4 116586884 116587016 -39043104 - B1_Mur3 SINE Alu -7 142 10 2 1474 733 286 151 24 chr4 116587033 116587836 -39042284 + L1MEc LINE L1 2408 3312 -3007 2 1474 964 215 147 12 chr4 116587840 116588085 -39042035 + 7SK RNA RNA 20 297 -34 2 1474 604 259 42 9 chr4 116588151 116588438 -39041682 + L1MD LINE L1 3155 3449 -2697 2 1474 246 153 53 26 chr4 116588700 116588814 -39041306 + (TA)n Simple_repeat Simple_repeat 2 118 0 2 1474 2383 120 32 34 chr4 116588946 116589326 -39040794 - MTC LTR MaLR -1 420 42 2 1474 880 195 11 33 chr4 116589338 116589518 -39040602 - B2_Mm2 SINE B2 -18 177 2 2 1474 261 304 0 0 chr4 116589645 116589701 -39040419 - tRNA-Ala-GCG tRNA tRNA -7 68 13 2 1474 493 227 0 83 chr4 116589748 116589868 -39040252 + PB1D9 SINE Alu 2 111 -9 2 1474 320 287 125 40 chr4 116589875 116590083 -39040037 + L1MD LINE L1 4763 5002 -1144 2 1474 399 273 57 14 chr4 116590083 116590224 -39039896 + B1F2 SINE Alu 2 148 -1 2 1474 320 287 125 40 chr4 116590224 116590367 -39039753 + L1MD LINE L1 5003 5144 -1002 2 1474 939 79 0 0 chr4 116590353 116590495 -39039625 - L1_Mur1 LINE L1 -667 5457 5305 2 1474 30944 26 0 0 chr4 116590506 116594988 -39035132 - L1Md_T LINE L1 -1 6581 2100 2 1474 993 0 0 0 chr4 116594988 116595095 -39035025 - U6 snRNA snRNA 0 107 1 2 1474 8517 57 7 7 chr4 116595095 116596272 -39033848 - L1_Mur1 LINE L1 -568 5318 4142 2 1474 344 315 56 0 chr4 116596308 116596416 -39033704 - Cheshire DNA MER1_type -2141 279 166 2 1474 375 344 123 21 chr4 116596540 116596775 -39033345 - L1MC4 LINE L1 -1046 6996 6738 2 1474 806 250 74 5 chr4 116596788 116596977 -39033143 - B3 SINE B2 0 216 15 2 1474 747 158 120 0 chr4 116597026 116597159 -39032961 - B1_Mur3 SINE Alu 0 149 1 2 1474 4502 147 45 10 chr4 116597172 116597975 -39032145 - Lx2B LINE L1 0 7000 6170 2 1474 634 268 57 25 chr4 116598291 116598448 -39031672 - RSINE1 SINE B4 -1 164 3 2 1474 643 233 13 20 chr4 116598526 116598675 -39031445 - B1F2 SINE Alu 0 149 2 2 1474 775 275 30 5 chr4 116598729 116598902 -39031218 - RMER10B LTR ERVL 0 398 223 2 1474 1644 26 5 0 chr4 116598902 116599093 -39031027 + B2_Mm1t SINE B2 2 193 0 2 1474 775 275 30 5 chr4 116599093 116599120 -39031000 - RMER10B LTR ERVL -176 222 193 2 1474 368 276 29 58 chr4 116599115 116599219 -39030901 - PB1D10 SINE Alu -12 105 5 2 1474 341 267 107 0 chr4 116599252 116599402 -39030718 - L1M3 LINE L1 -767 5373 5208 2 1474 2068 49 4 22 chr4 116599899 116600172 -39029948 - L1_Mus2 LINE L1 -1 6565 6298 2 1474 1390 62 17 0 chr4 116600289 116600466 -39029654 + B2_Mm2 SINE B2 2 181 -14 3 1474 671 241 28 0 chr4 116600608 116600753 -39029367 - B1_Mur1 SINE Alu 0 149 1 3 1474 598 260 17 72 chr4 116601457 116601693 -39028427 + ID_B1 SINE B4 2 224 0 3 1474 375 290 74 30 chr4 116601765 116601889 -39028231 + B4A SINE B4 102 231 -61 3 1474 251 329 0 58 chr4 116601889 116601976 -39028144 + RSINE1 SINE B4 4 85 -80 3 1474 287 78 20 0 chr4 116602461 116602512 -39027608 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 3 1474 1158 74 0 7 chr4 116602533 116602682 -39027438 - B1_Mus1 SINE Alu 0 148 1 3 1474 180 233 83 0 chr4 116602732 116602792 -39027328 + L2c LINE L2 3231 3295 -92 3 1474 1398 66 6 0 chr4 116602839 116603022 -39027098 - B2_Mm1a SINE B2 -8 185 2 3 1474 734 210 53 32 chr4 116603022 116603209 -39026911 - B2_Mm2 SINE B2 -4 191 1 3 1474 294 29 0 0 chr4 116603218 116603253 -39026867 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1474 781 160 46 0 chr4 116603254 116603385 -39026735 - B1_Mur4 SINE Alu -13 137 1 3 1474 280 260 0 0 chr4 116604029 116604079 -39026041 + ID2 SINE ID 10 59 -24 3 1474 229 191 0 0 chr4 116604080 116604122 -39025998 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1474 349 169 28 0 chr4 116604301 116604372 -39025748 - L1MD1 LINE L1 -255 5987 5915 3 1474 272 314 35 11 chr4 116604440 116604527 -39025593 + MTE2a LTR MaLR 3 91 -268 3 1474 313 200 11 101 chr4 116604768 116604813 -39025307 + MTE2a LTR MaLR 281 316 -63 3 1474 3914 117 106 10 chr4 116604813 116605444 -39024676 - RMER6A LTR ERVK 0 756 59 3 1474 441 0 0 0 chr4 116605444 116605493 -39024627 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 3 1474 3914 117 106 10 chr4 116605493 116605550 -39024570 - RMER6A LTR ERVK -698 58 2 3 1474 313 212 14 96 chr4 116605550 116605604 -39024516 + MTE2a LTR MaLR 299 358 -21 3 1474 2589 318 127 26 chr4 116605604 116606818 -39023302 + MTE2a-int LTR MaLR 1 1336 -244 3 1474 297 0 0 0 chr4 116606935 116606968 -39023152 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1474 429 20 0 0 chr4 116606968 116607017 -39023103 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1474 230 0 33 0 chr4 116607017 116607046 -39023074 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1474 672 271 128 88 chr4 116607066 116607563 -39022557 - L1MDa LINE L1 -4907 1726 1175 3 1474 582 282 6 30 chr4 116607563 116607731 -39022389 + RSINE1 SINE B4 2 165 0 3 1474 672 271 128 88 chr4 116607731 116607913 -39022207 - L1MDa LINE L1 -5459 1174 1024 3 1474 781 146 39 0 chr4 116607913 116608043 -39022077 + B1_Mur3 SINE Alu 1 135 -14 3 1474 1334 99 0 10 chr4 116608044 116608238 -39021882 - B2_Mm2 SINE B2 -3 192 1 3 1474 672 271 128 88 chr4 116608238 116608329 -39021791 - L1MDa LINE L1 -5610 1023 924 3 1474 2743 49 3 23 chr4 116608333 116608686 -39021434 - ORR1A1 LTR MaLR 0 346 1 3 1474 723 326 69 30 chr4 116608853 116609258 -39020862 - L1MDa LINE L1 -6193 440 20 3 1474 397 278 0 92 chr4 116609342 116609461 -39020659 + RSINE1 SINE B4 58 165 0 3 1474 365 298 226 0 chr4 116609502 116609683 -39020437 - MIRb SINE MIR -22 246 25 3 1474 515 263 43 9 chr4 116609699 116609814 -39020306 - RSINE1 SINE B4 0 165 47 3 1474 1422 230 81 26 chr4 116609816 116610160 -39019960 - MTE2a LTR MaLR -15 364 2 3 1474 225 0 0 0 chr4 116610277 116610302 -39019818 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1474 423 78 0 0 chr4 116610302 116610365 -39019755 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1474 975 91 14 0 chr4 116610457 116610599 -39019521 + B2_Mm2 SINE B2 3 160 -38 3 1474 537 78 13 0 chr4 116610577 116610654 -39019466 - B2_Mm1t SINE B2 -115 78 1 3 1474 564 260 32 8 chr4 116610679 116610803 -39019317 + RSINE1 SINE B4 2 128 -37 3 1474 407 19 19 0 chr4 116610824 116610876 -39019244 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1474 219 69 0 0 chr4 116610881 116610910 -39019210 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 3 1474 1123 183 30 5 chr4 116610939 116611142 -39018978 + B3 SINE B2 3 210 -6 3 1474 638 278 20 7 chr4 116611335 116611487 -39018633 + RSINE1 SINE B4 3 156 -9 3 1474 612 243 20 14 chr4 116611583 116611729 -39018391 + RSINE1 SINE B4 2 148 -17 3 1474 22 80 0 0 chr4 116611750 116611800 -39018320 + AT_rich Low_complexity Low_complexity 1 50 0 3 1474 1188 167 67 0 chr4 116611896 116612106 -39018014 - URR1A DNA MER1_type 0 226 3 3 1474 26 30 0 0 chr4 116612914 116612947 -39017173 + AT_rich Low_complexity Low_complexity 1 33 0 3 1474 605 214 144 0 chr4 116613319 116613474 -39016646 + B3 SINE B2 2 181 -35 3 1474 285 29 0 0 chr4 116613474 116613508 -39016612 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1474 605 214 144 0 chr4 116613508 116613525 -39016595 + B3 SINE B2 182 198 -18 3 1474 21 0 0 0 chr4 116613538 116613559 -39016561 + AT_rich Low_complexity Low_complexity 1 21 0 3 1474 794 238 58 0 chr4 116613791 116613963 -39016157 + ID_B1 SINE B4 12 193 -31 3 1474 294 146 0 0 chr4 116614036 116614084 -39016036 + ID_B1 SINE B4 145 192 -32 3 1474 422 137 125 91 chr4 116614238 116614370 -39015750 + B1_Mur4 SINE Alu 1 150 0 3 1474 1282 239 65 18 chr4 116614373 116614709 -39015411 - Lx6 LINE L1 -18 7442 7091 3 1474 578 275 0 40 chr4 116614856 116615004 -39015116 - ID_B1 SINE B4 0 224 83 3 1474 33 25 0 0 chr4 116615104 116615144 -39014976 + AT_rich Low_complexity Low_complexity 1 40 0 3 1474 477 97 0 0 chr4 116616123 116616195 -39013925 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1474 814 176 0 42 chr4 116616245 116616387 -39013733 + B1_Mur3 SINE Alu 1 136 -13 3 1474 278 151 0 36 chr4 116616454 116616509 -39013611 + RSINE1 SINE B4 37 89 -76 3 1474 324 64 0 0 chr4 116616542 116616589 -39013531 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1474 478 262 172 23 chr4 116617096 116617311 -39012809 + MIR SINE MIR 14 260 -2 3 1474 697 125 83 30 chr4 116617341 116617473 -39012647 - B1_Mur3 SINE Alu 0 149 11 3 1474 23 0 0 0 chr4 116617486 116617509 -39012611 + AT_rich Low_complexity Low_complexity 1 23 0 3 1474 732 197 23 0 chr4 116617521 116617653 -39012467 + B1_Mur2 SINE Alu 9 143 -6 3 1474 448 258 23 39 chr4 116617710 116617839 -39012281 - RSINE1 SINE B4 -36 129 3 3 1474 390 272 66 28 chr4 116617866 116617972 -39012148 + PB1D10 SINE Alu 1 110 -7 3 1474 513 0 0 0 chr4 116619896 116619953 -39010167 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1474 676 73 21 0 chr4 116620599 116620695 -39009425 - B1_Mur3 SINE Alu -7 142 45 3 1474 371 267 36 62 chr4 116620996 116621108 -39009012 - PB1D10 SINE Alu 0 117 9 3 1474 1177 82 0 0 chr4 116621183 116621330 -39008790 + B1_Mus1 SINE Alu 2 148 0 3 1474 324 125 0 0 chr4 116621330 116621394 -39008726 + (A)n Simple_repeat Simple_repeat 1 64 0 3 1474 351 0 0 0 chr4 116621765 116621804 -39008316 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 1474 531 165 10 10 chr4 116621804 116621902 -39008218 - B1_Mur2 SINE Alu -12 137 40 3 1474 1202 29 0 0 chr4 116622196 116622333 -39007787 + B1_Mus1 SINE Alu 2 138 -10 3 1474 217 226 50 79 chr4 116622671 116622772 -39007348 + PB1D7 SINE Alu 1 98 -22 3 1474 492 236 23 16 chr4 116622688 116622817 -39007303 + ID_B1 SINE B4 93 222 -2 3 1474 495 0 0 0 chr4 116623961 116624016 -39006104 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 3 1474 937 117 0 7 chr4 116624046 116624184 -39005936 - B1_Mur3 SINE Alu -10 139 3 3 1474 386 137 11 0 chr4 116624214 116624309 -39005811 + (TTTTTG)n Simple_repeat Simple_repeat 2 97 0 3 1474 286 253 121 0 chr4 116624407 116624498 -39005622 + ID_B1 SINE B4 112 213 -11 3 1474 260 242 48 16 chr4 116625280 116625343 -39004777 - ID4 SINE ID -7 76 12 3 1474 2242 95 12 12 chr4 116625561 116625890 -39004230 - ORR1A4 LTR MaLR 0 329 1 3 1474 673 168 78 35 chr4 116625941 116626083 -39004037 - B1_Mur4 SINE Alu -1 149 2 3 1474 30 27 0 0 chr4 116626300 116626337 -39003783 + AT_rich Low_complexity Low_complexity 1 37 0 3 1474 195 42 0 0 chr4 116626417 116626441 -39003679 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1474 183 42 0 0 chr4 116626470 116626494 -39003626 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1474 210 448 22 0 chr4 116626566 116626700 -39003420 + L2b LINE L2 3220 3356 -19 3 1474 233 291 37 46 chr4 116626726 116626834 -39003286 - PB1D10 SINE Alu 0 117 11 3 1474 587 174 152 72 chr4 116626867 116627077 -39003043 + B3 SINE B2 1 205 -11 3 1474 267 299 68 62 chr4 116627101 116627247 -39002873 + B1F2 SINE Alu 3 149 0 3 1474 342 0 0 0 chr4 116627283 116627321 -39002799 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1474 285 302 39 59 chr4 116628121 116628223 -39001897 - ID_B1 SINE B4 -34 190 91 3 1474 534 262 121 32 chr4 116628291 116628539 -39001581 - RMER21B LTR ERV1 -281 561 292 3 1474 970 105 0 28 chr4 116628564 116628741 -39001379 + (TTCTCC)n Simple_repeat Simple_repeat 5 176 0 3 1474 1085 92 0 0 chr4 116628859 116629001 -39001119 + B1_Mus1 SINE Alu 2 143 -5 3 1474 1652 299 77 82 chr4 116629173 116629695 -39000425 - MER21B LTR ERV1 -56 807 282 3 1474 2781 60 46 82 chr4 116629695 116629896 -39000224 + MTB LTR MaLR 1 187 -213 3 1474 1216 41 0 7 chr4 116629896 116630044 -39000076 + B1_Mm SINE Alu 1 147 0 3 1474 2781 60 46 82 chr4 116630044 116630257 -38999863 + MTB LTR MaLR 188 400 0 3 1474 1652 299 77 82 chr4 116630257 116630418 -38999702 - MER21B LTR ERV1 -582 281 120 3 1474 1296 117 16 5 chr4 116630418 116630607 -38999513 - B2_Mm2 SINE B2 -3 192 2 3 1474 1652 299 77 82 chr4 116630607 116630690 -38999430 - MER21B LTR ERV1 -744 119 44 3 1474 876 235 56 0 chr4 116630693 116630889 -38999231 + B3 SINE B2 5 211 -5 3 1474 975 99 28 14 chr4 116630965 116631108 -38999012 - B1_Mur4 SINE Alu -1 149 5 3 1474 767 161 13 0 chr4 116631478 116631633 -38998487 + CT-rich Low_complexity Low_complexity 1 157 0 3 1474 192 40 0 0 chr4 116631767 116631792 -38998328 + (TCCC)n Simple_repeat Simple_repeat 3 27 0 3 1474 216 171 24 0 chr4 116632078 116632119 -38998001 + ID4 SINE ID 3 44 -39 3 1474 1312 71 16 16 chr4 116632298 116632484 -38997636 - B2_Mm2 SINE B2 -9 186 1 3 1474 312 113 14 40 chr4 116632724 116632798 -38997322 + (TATG)n Simple_repeat Simple_repeat 3 74 0 4 1474 21 36 0 0 chr4 116632813 116632841 -38997279 + AT_rich Low_complexity Low_complexity 1 28 0 4 1474 488 291 81 7 chr4 116633020 116633169 -38996951 + B4 SINE B4 125 284 -8 4 1474 435 222 6 148 chr4 116633782 116633920 -38996200 - L1MB8 LINE L1 -144 6040 5914 4 1474 1465 60 11 5 chr4 116633920 116634105 -38996015 + B2_Mm1a SINE B2 1 186 -7 4 1474 435 200 7 145 chr4 116634105 116634176 -38995944 - L1MB8 LINE L1 -265 5913 5862 4 1474 207 0 0 0 chr4 116634176 116634199 -38995921 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1474 2662 65 67 0 chr4 116634295 116634651 -38995469 - L1Md_F2 LINE L1 -1 6581 6202 4 1474 543 249 422 8 chr4 116634697 116634941 -38995179 - L1MB8 LINE L1 -400 5778 5434 4 1474 1024 206 62 5 chr4 116635542 116635752 -38994368 + ID_B1 SINE B4 1 222 -2 4 1474 701 231 21 0 chr4 116635886 116636029 -38994091 + B1_Mur1 SINE Alu 4 149 0 4 1474 1203 61 0 0 chr4 116636189 116636336 -38993784 + B1_Mus1 SINE Alu 2 148 0 4 1474 316 193 24 12 chr4 116636337 116636421 -38993699 + A-rich Low_complexity Low_complexity 4 88 0 4 1474 626 224 50 55 chr4 116636425 116636624 -38993496 + B3A SINE B2 1 198 0 4 1474 232 275 75 0 chr4 116636683 116636763 -38993357 + B1F SINE Alu 11 96 -53 4 1474 1373 85 0 16 chr4 116637157 116637349 -38992771 + B2_Mm2 SINE B2 1 189 -6 4 1474 813 248 68 95 chr4 116637462 116637756 -38992364 - B4 SINE B4 0 292 7 4 1474 273 98 0 0 chr4 116638006 116638047 -38992073 + (TATG)n Simple_repeat Simple_repeat 4 44 0 4 1474 878 124 0 0 chr4 116638776 116638905 -38991215 + B3 SINE B2 2 130 -86 4 1474 1389 89 26 0 chr4 116639302 116639492 -38990628 - B2_Mm2 SINE B2 0 195 1 4 1474 881 43 0 0 chr4 116639933 116640050 -38990070 - B1_Mus2 SINE Alu 0 147 31 4 1474 208 52 49 49 chr4 116640050 116640111 -38990009 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 4 1474 926 142 103 29 chr4 116640131 116640305 -38989815 + B2_Mm2 SINE B2 5 191 -4 4 1474 210 208 143 65 chr4 116640312 116640389 -38989731 - PB1D10 SINE Alu -34 83 1 4 1474 525 360 63 3 chr4 116640437 116640721 -38989399 + L2 LINE L2 1224 1524 -1895 4 1474 2558 118 22 20 chr4 116640737 116641143 -38988977 + MTB_Mm LTR MaLR 1 407 0 4 1474 288 260 91 30 chr4 116641281 116641380 -38988740 + MT2B LTR ERVL 153 257 -344 4 1474 569 164 0 28 chr4 116641312 116641413 -38988707 + B1_Mus1 SINE Alu 37 136 -12 4 1474 345 24 0 0 chr4 116641413 116641455 -38988665 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4 1474 480 126 279 10 chr4 116641547 116641651 -38988469 + B1_Mus1 SINE Alu 3 134 -14 4 1474 299 310 46 61 chr4 116641794 116641807 -38988313 - L2 LINE L2 -1549 1870 1859 4 1474 1391 99 11 0 chr4 116641807 116641998 -38988122 + B2_Mm1t SINE B2 1 193 0 4 1474 299 310 46 61 chr4 116641998 116642055 -38988065 - L2 LINE L2 -1561 1858 1804 4 1474 738 0 0 0 chr4 116642055 116642137 -38987983 + (CTTTG)n Simple_repeat Simple_repeat 3 84 0 4 1474 299 310 46 61 chr4 116642137 116642261 -38987859 - L2 LINE L2 -1616 1803 1679 4 1474 23 33 0 0 chr4 116642261 116642291 -38987829 + AT_rich Low_complexity Low_complexity 1 30 0 4 1474 1043 82 7 13 chr4 116642299 116642448 -38987672 + B1_Mur4 SINE Alu 1 148 -2 4 1474 501 271 163 56 chr4 116642495 116642617 -38987503 + L2 LINE L2 1917 2045 -1374 4 1474 1299 88 22 6 chr4 116642617 116642799 -38987321 - B2_Mm2 SINE B2 -8 187 3 4 1474 501 271 163 56 chr4 116642799 116643137 -38986983 + L2 LINE L2 2046 2426 -993 4 1474 349 208 124 10 chr4 116643186 116643283 -38986837 - PB1D10 SINE Alu 0 117 10 4 1474 235 61 73 109 chr4 116643296 116643351 -38986769 - MT2A LTR ERVL -1 600 548 4 1474 198 209 0 0 chr4 116643352 116643395 -38986725 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1474 317 178 11 0 chr4 116643395 116643482 -38986638 - MT2A LTR ERVL -61 523 409 4 1474 737 187 0 7 chr4 116643838 116643973 -38986147 - B3 SINE B2 -80 136 3 4 1474 681 206 7 27 chr4 116644070 116644220 -38985900 - B3 SINE B2 0 216 70 4 1474 221 286 84 14 chr4 116644226 116644297 -38985823 + B3A SINE B2 95 170 -28 4 1474 496 238 29 0 chr4 116644335 116644440 -38985680 + ID_B1 SINE B4 78 185 -39 4 1474 327 222 0 0 chr4 116644552 116644633 -38985487 + A-rich Low_complexity Low_complexity 1 81 0 4 1474 180 227 23 0 chr4 116644679 116644723 -38985397 + MIR SINE MIR 103 147 -61 4 1474 195 42 0 0 chr4 116644958 116644982 -38985138 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 4 1474 184 0 0 88 chr4 116645369 116645403 -38984717 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1474 512 284 136 27 chr4 116646037 116646258 -38983862 + B4 SINE B4 48 292 0 4 1474 292 196 20 0 chr4 116646316 116646367 -38983753 + B4 SINE B4 223 274 -18 4 1474 399 252 52 43 chr4 116646638 116646754 -38983366 + B1_Mur1 SINE Alu 1 117 -32 4 1474 244 234 97 102 chr4 116647154 116647330 -38982790 + L2c LINE L2 3213 3387 0 4 1474 434 290 57 21 chr4 116647343 116647484 -38982636 + ID_B1 SINE B4 78 223 -1 4 1474 392 260 18 23 chr4 116648777 116648877 -38981243 + PB1 SINE Alu 8 111 -9 4 1474 1067 109 0 6 chr4 116648888 116649054 -38981066 + (TCC)n Simple_repeat Simple_repeat 2 166 0 4 1474 358 284 26 52 chr4 116649060 116649175 -38980945 + PB1D10 SINE Alu 1 112 -5 4 1474 997 135 27 43 chr4 116649189 116649375 -38980745 + B2_Mm2 SINE B2 3 185 -10 4 1474 927 156 0 26 chr4 116649488 116649639 -38980481 + B1_Mur1 SINE Alu 2 148 -1 4 1474 526 229 17 0 chr4 116649898 116650016 -38980104 + PB1D9 SINE Alu 1 120 0 4 1474 257 241 0 18 chr4 116650016 116650071 -38980049 + polypurine Low_complexity Low_complexity 4 57 0 4 1474 472 54 54 0 chr4 116650208 116650282 -38979838 + (TTCCC)n Simple_repeat Simple_repeat 4 81 0 4 1474 1158 75 0 0 chr4 116650283 116650430 -38979690 - B1_Mus1 SINE Alu -1 147 1 4 1474 479 252 55 8 chr4 116650445 116650573 -38979547 - B3A SINE B2 -64 134 1 4 1474 242 221 78 0 chr4 116650993 116651070 -38979050 - Lx9 LINE L1 -8 7636 7554 4 1474 1300 102 11 11 chr4 116651186 116651374 -38978746 + B2_Mm1t SINE B2 1 188 -5 4 1474 1184 75 0 0 chr4 116651374 116651520 -38978600 + B1_Mm SINE Alu 1 147 0 4 1474 225 0 0 0 chr4 116651520 116651545 -38978575 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1474 645 268 37 14 chr4 116653754 116653945 -38976175 - B3A SINE B2 -10 185 2 4 184 799 204 0 7 chr4 116653964 116654112 -38976008 - B1_Mur3 SINE Alu -1 148 2 4 1475 962 131 20 7 chr4 116654497 116654643 -38975477 - B1_Mus1 SINE Alu 0 148 1 4 1475 459 294 15 7 chr4 116654680 116654817 -38975303 - B3A SINE B2 -54 144 7 4 1475 29 28 0 0 chr4 116654933 116654969 -38975151 + AT_rich Low_complexity Low_complexity 1 36 0 4 1475 900 238 44 0 chr4 116655122 116655328 -38974792 + ID_B1 SINE B4 1 215 -9 4 1475 450 256 76 23 chr4 116655374 116655406 -38974714 + ID_B1 SINE B4 58 217 -2 4 1475 691 133 83 0 chr4 116655406 116655526 -38974594 + B1_Mur2 SINE Alu 13 142 -7 4 1475 4165 70 0 6 chr4 116655535 116656069 -38974051 + L1Md_F2 LINE L1 6052 6582 0 4 1475 548 228 25 76 chr4 116656084 116656241 -38973879 + B2_Mm2 SINE B2 37 185 -10 4 1475 693 229 193 0 chr4 116656243 116656461 -38973659 + L1MD LINE L1 5325 5584 -2411 4 1475 183 42 0 0 chr4 116656466 116656490 -38973630 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1475 1194 79 0 0 chr4 116656495 116656660 -38973460 - B2_Mm2 SINE B2 -30 165 1 4 1475 869 218 135 16 chr4 116656687 116656990 -38973130 + L1MC2 LINE L1 5594 5932 -412 4 1475 1138 68 0 33 chr4 116657696 116657849 -38972271 + B1_Mus1 SINE Alu 1 148 0 4 1475 710 260 71 9 chr4 116657982 116658192 -38971928 + ID_B1 SINE B4 2 224 0 4 1475 394 149 54 0 chr4 116662560 116662634 -38967486 + B1_Mur3 SINE Alu 1 78 -71 4 1475 495 0 0 0 chr4 116662634 116662689 -38967431 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1475 414 0 0 0 chr4 116662689 116662734 -38967386 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1475 465 271 19 37 chr4 116663207 116663368 -38966752 + RSINE1 SINE B4 2 159 -6 4 1475 567 271 23 17 chr4 116663384 116663540 -38966580 + ID_B1 SINE B4 64 218 -74 4 1475 381 183 0 53 chr4 116663550 116663625 -38966495 + BC1_Mm scRNA scRNA 2 72 -80 4 1475 713 163 0 47 chr4 116664513 116664642 -38965478 + B1_Mur4 SINE Alu 7 129 -21 4 1475 234 246 0 0 chr4 116664642 116664703 -38965417 + GA-rich Low_complexity Low_complexity 2 62 0 4 1475 276 211 18 0 chr4 116664707 116664764 -38965356 + B1_Mus1 SINE Alu 4 61 -87 4 1475 1538 110 9 0 chr4 116664857 116665076 -38965044 + URR1A DNA MER1_type 5 225 -1 4 1475 775 158 0 38 chr4 116667565 116667697 -38962423 + B1_Mus2 SINE Alu 1 127 -20 4 1475 2952 76 2 77 chr4 116670137 116670197 -38959923 - MTA_Mm LTR MaLR 0 396 355 4 1475 1217 55 0 0 chr4 116670197 116670342 -38959778 + B1_Mm SINE Alu 3 147 0 4 1475 2952 76 2 77 chr4 116670342 116670709 -38959411 - MTA_Mm LTR MaLR -42 354 1 4 1475 1498 67 10 5 chr4 116671493 116671687 -38958433 - B2_Mm2 SINE B2 0 195 1 4 1475 348 43 0 0 chr4 116671719 116671766 -38958354 + B1_Mm SINE Alu 101 147 0 4 1475 185 316 0 78 chr4 116673559 116673662 -38956458 + L2a LINE L2 2301 2395 -1024 4 1475 216 67 0 0 chr4 116673796 116673826 -38956294 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1475 225 0 0 0 chr4 116673848 116673873 -38956247 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1475 523 259 89 20 chr4 116673903 116674049 -38956071 - RSINE1 SINE B4 -9 156 1 4 1475 423 285 138 0 chr4 116674049 116674172 -38955948 - ID_B1 SINE B4 -1 223 84 4 1475 826 250 10 124 chr4 116677865 116678066 -38952054 - B3A SINE B2 -4 191 14 5 1475 462 241 32 57 chr4 116678151 116678274 -38951846 - B1_Mur2 SINE Alu 0 149 30 5 1475 242 308 93 131 chr4 116678278 116678622 -38951498 - Tigger6a DNA MER2_type -447 636 306 5 1475 974 71 0 0 chr4 116678632 116678758 -38951362 - B1_Mus2 SINE Alu -13 134 9 5 1475 2178 120 50 24 chr4 116678763 116679146 -38950974 + RMER10B LTR ERVL 6 398 0 5 1475 211 276 178 17 chr4 116679146 116679264 -38950856 + L2a LINE L2 3242 3378 -48 4 1475 1226 48 0 0 chr4 116679471 116679618 -38950502 + B1_Mus2 SINE Alu 1 147 0 5 1475 966 126 0 22 chr4 116680629 116680767 -38949353 - B1_Mur3 SINE Alu -13 136 2 5 1475 195 129 0 0 chr4 116680778 116680809 -38949311 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1475 1157 48 7 7 chr4 116680810 116680956 -38949164 - B1_Mm SINE Alu 0 147 2 5 1475 1146 166 98 5 chr4 116681246 116681440 -38948680 + B3 SINE B2 2 213 -3 5 1475 267 158 45 55 chr4 116681455 116681554 -38948566 - B1_Mur3 SINE Alu -3 146 40 5 1475 1612 216 76 55 chr4 116681554 116681975 -38948145 - Lx6 LINE L1 -77 7383 6954 5 1475 24 0 0 0 chr4 116681977 116682001 -38948119 + AT_rich Low_complexity Low_complexity 1 24 0 5 1475 709 286 97 45 chr4 116682001 116682201 -38947919 + Charlie1a DNA MER1_type 297 501 -954 5 1475 989 53 0 219 chr4 116682201 116682393 -38947727 - B1_Mur4 SINE Alu 0 150 1 5 1475 709 286 97 45 chr4 116682393 116682544 -38947576 + Charlie1a DNA MER1_type 502 666 -789 5 1475 675 181 43 34 chr4 116682548 116682682 -38947438 + RMER19B LTR ERVK 1 191 -546 5 1475 716 140 0 0 chr4 116682682 116682789 -38947331 + B2_Mm2 SINE B2 1 107 -88 5 1475 671 54 0 11 chr4 116682818 116682911 -38947209 + (GAA)n Simple_repeat Simple_repeat 2 93 0 5 1475 3756 153 60 53 chr4 116682911 116683657 -38946463 + RMER19B LTR ERVK 173 896 -6 5 1475 496 284 54 112 chr4 116683642 116683812 -38946308 + Charlie1a DNA MER1_type 650 820 -635 5 1475 1145 78 0 0 chr4 116683812 116683954 -38946166 + B1_Mus1 SINE Alu 2 143 -5 5 1475 496 284 54 112 chr4 116683954 116684025 -38946095 + Charlie1a DNA MER1_type 821 877 -578 5 1475 266 289 134 0 chr4 116684033 116684130 -38945990 + PB1D10 SINE Alu 6 115 -2 5 1475 220 236 0 141 chr4 116684140 116684181 -38945939 + PB1D7 SINE Alu 2 39 -81 5 1475 956 61 8 0 chr4 116684181 116684313 -38945807 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 5 1475 499 221 13 117 chr4 116684322 116684476 -38945644 + RSINE1 SINE B4 4 141 -24 5 1475 712 220 111 16 chr4 116684671 116684860 -38945260 + B3 SINE B2 3 209 -7 5 1475 1506 65 16 0 chr4 116685018 116685203 -38944917 + B2_Mm2 SINE B2 1 188 -7 5 1475 530 261 9 0 chr4 116685249 116685364 -38944756 + PB1D10 SINE Alu 1 116 -1 5 1475 239 192 131 203 chr4 116685426 116685648 -38944472 + Charlie1a DNA MER1_type 1250 1455 0 5 1475 21 57 0 0 chr4 116685824 116685859 -38944261 + AT_rich Low_complexity Low_complexity 1 35 0 5 1475 389 263 68 26 chr4 116685865 116685878 -38944242 + ID_B1 SINE B4 92 213 -11 5 1475 428 211 106 0 chr4 116685878 116685982 -38944138 + B1F1 SINE Alu 24 138 -11 5 1475 315 239 96 21 chr4 116686024 116686118 -38944002 + BC1_Mm scRNA scRNA 14 114 -38 5 1475 428 278 80 0 chr4 116686127 116686278 -38943842 + RSINE1 SINE B4 2 164 -1 5 1475 1640 42 0 0 chr4 116686551 116686744 -38943376 - B2_Mm1a SINE B2 0 193 1 5 1475 189 0 0 0 chr4 116686757 116686778 -38943342 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1475 1060 77 0 27 chr4 116686805 116686951 -38943169 - B1_Mus1 SINE Alu 0 148 7 5 1475 416 193 31 123 chr4 116686841 116686971 -38943149 - MT2B LTR ERVL -337 264 147 5 1475 195 42 0 0 chr4 116687020 116687044 -38943076 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 1475 1169 200 5 0 chr4 116687044 116687234 -38942886 - B3 SINE B2 -16 200 10 5 1475 1357 95 26 0 chr4 116688508 116688698 -38941422 - B2_Mm2 SINE B2 0 195 1 5 1475 214 321 0 19 chr4 116688766 116688820 -38941300 + L2a LINE L2 3357 3409 -17 5 1475 441 161 53 0 chr4 116688880 116688968 -38941152 - B1_Mur4 SINE Alu -9 141 7 5 1475 606 159 142 0 chr4 116688971 116689084 -38941036 - B1_Mur1 SINE Alu -2 147 19 5 1475 629 226 54 60 chr4 116689177 116689361 -38940759 + B3 SINE B2 1 183 -33 5 1475 203 214 0 45 chr4 116689384 116689428 -38940692 + polypurine Low_complexity Low_complexity 3 44 0 5 1475 662 195 9 0 chr4 116689458 116689571 -38940549 + B1_Mus1 SINE Alu 1 114 -34 5 1475 308 186 10 140 chr4 116689578 116689645 -38940475 - MLT1H1 LTR MaLR 0 555 493 5 1475 1524 62 0 10 chr4 116689645 116689840 -38940280 + B2_Mm2 SINE B2 1 193 -2 5 1475 308 243 11 152 chr4 116689840 116689950 -38940170 - MLT1H1 LTR MaLR -63 492 397 5 1475 798 289 24 0 chr4 116690013 116690221 -38939899 + ID_B1 SINE B4 3 215 -9 5 1475 306 258 214 0 chr4 116690461 116690550 -38939570 - PB1D10 SINE Alu -8 109 2 5 1475 975 79 14 0 chr4 116690912 116691051 -38939069 - B1_Mur4 SINE Alu 0 150 10 5 1475 243 309 64 86 chr4 116690955 116691144 -38938976 - MT2B2 LTR ERVL -327 257 74 5 1475 493 97 0 0 chr4 116691144 116691216 -38938904 - MURVY-LTR LTR ERV1 0 519 448 5 1475 1261 55 0 12 chr4 116691256 116691421 -38938699 - MURVY-LTR LTR ERV1 -356 163 1 5 1475 886 113 0 96 chr4 116691583 116691739 -38938381 + B1_Mur4 SINE Alu 10 150 0 5 1475 241 309 71 0 chr4 116692294 116692378 -38937742 - MIR3 SINE MIR -52 156 67 5 1475 414 259 282 84 chr4 116693165 116693403 -38936717 + 7SLRNA srpRNA srpRNA 21 305 -9 5 1475 728 224 24 19 chr4 116693413 116693602 -38936518 + B3 SINE B2 1 192 -3 5 1475 1937 192 104 33 chr4 116693835 116694325 -38935795 - Lx9 LINE L1 -161 7483 6959 5 1475 815 153 36 0 chr4 116694345 116694482 -38935638 - B1_Mur4 SINE Alu -2 148 7 5 1475 278 307 67 93 chr4 116694387 116694581 -38935539 - MT2B2 LTR ERVL -327 257 69 5 1475 3912 141 160 15 chr4 116695043 116695633 -38934487 - RMER13A LTR ERVK 0 860 161 5 1475 1211 47 0 13 chr4 116695633 116695783 -38934337 - B1_Mus1 SINE Alu 0 148 1 5 1475 3912 141 160 15 chr4 116695783 116695943 -38934177 - RMER13A LTR ERVK -700 160 1 5 1475 275 316 50 33 chr4 116696235 116696356 -38933764 - L2 LINE L2 -866 2553 2431 5 1475 1269 158 34 0 chr4 116696455 116696664 -38933456 - B3 SINE B2 0 216 1 5 1475 257 333 43 43 chr4 116696736 116696830 -38933290 - RSINE1 SINE B4 0 165 72 5 1475 1166 68 0 27 chr4 116696856 116697006 -38933114 - B1_Mus1 SINE Alu -2 146 1 5 1475 424 230 8 15 chr4 116697041 116697149 -38932971 + PB1D10 SINE Alu 9 117 -3 5 1475 23 33 0 0 chr4 116697338 116697368 -38932752 + AT_rich Low_complexity Low_complexity 1 30 0 5 1475 284 320 0 0 chr4 116697375 116697453 -38932667 - B3 SINE B2 -11 205 128 5 1475 690 270 68 5 chr4 116697458 116697648 -38932472 - B3 SINE B2 -10 206 5 5 1475 800 138 24 0 chr4 116697655 116697778 -38932342 - B1_Mus2 SINE Alu -12 135 10 5 1475 316 202 0 124 chr4 116697678 116697791 -38932329 - MT2B LTR ERVL -337 264 166 5 1475 537 227 32 32 chr4 116697854 116697977 -38932143 - B1_Mur1 SINE Alu -1 148 26 5 1475 649 224 41 36 chr4 116698035 116698241 -38931879 - B3 SINE B2 -3 192 2 5 1475 1018 136 67 11 chr4 116698252 116698430 -38931690 - B2_Mm2 SINE B2 -7 188 1 5 1475 365 273 10 29 chr4 116698436 116698538 -38931582 - PB1D10 SINE Alu -7 110 11 5 1475 639 264 102 0 chr4 116698448 116698615 -38931505 - ID_B1 SINE B4 -39 185 2 5 1475 335 281 273 0 chr4 116698669 116698797 -38931323 - RSINE1 SINE B4 -1 164 2 5 1475 278 274 98 69 chr4 116698900 116699002 -38931118 - PB1 SINE Alu -14 113 9 5 1475 704 174 8 32 chr4 116699038 116699163 -38930957 - B1_Mm SINE Alu 0 147 26 5 1475 746 264 47 0 chr4 116699163 116699356 -38930764 - B3 SINE B2 -14 202 1 5 1475 254 158 66 0 chr4 116699586 116699662 -38930458 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 5 1475 287 71 0 0 chr4 116699662 116699704 -38930416 - B1_Mm SINE Alu 0 147 106 5 1475 497 182 81 0 chr4 116699815 116699914 -38930206 + U6 snRNA snRNA 1 107 0 5 1475 1406 54 43 5 chr4 116700205 116700229 -38929891 - B2_Mm1t SINE B2 0 193 162 5 1475 315 0 0 0 chr4 116700229 116700264 -38929856 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 1475 1406 54 43 5 chr4 116700264 116700424 -38929696 - B2_Mm1t SINE B2 -32 161 3 5 1475 1406 89 5 5 chr4 116700448 116700640 -38929480 - B2_Mm1a SINE B2 0 193 2 5 1475 256 211 98 66 chr4 116700824 116700946 -38929174 - B1F2 SINE Alu -23 126 1 5 1475 326 244 65 32 chr4 116700842 116700965 -38929155 - ID_B1 SINE B4 -36 188 62 5 1475 766 168 34 27 chr4 116701239 116701386 -38928734 - B1_Mur1 SINE Alu 0 149 2 5 1475 1238 82 40 75 chr4 116701391 116701590 -38928530 - B2_Mm2 SINE B2 -2 193 2 5 1475 558 227 91 0 chr4 116701629 116701761 -38928359 - ID_B1 SINE B4 0 224 81 5 1475 495 296 32 0 chr4 116701884 116702009 -38928111 - B1F SINE Alu -7 142 14 5 1475 857 140 28 14 chr4 116702030 116702175 -38927945 + B1_Mus1 SINE Alu 2 148 0 5 1475 206 121 0 0 chr4 116702175 116702208 -38927912 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 5 1475 239 230 120 13 chr4 116702381 116702456 -38927664 - RSINE1 SINE B4 -82 83 1 5 1475 267 204 182 0 chr4 116702458 116702546 -38927574 - PB1 SINE Alu 0 127 24 5 1475 385 328 42 83 chr4 116702732 116702828 -38927292 - HAL1 LINE L1 -721 1786 1694 5 1475 1455 48 27 5 chr4 116702828 116702858 -38927262 - B2_Mm1a SINE B2 -2 191 157 5 1475 297 0 0 0 chr4 116702858 116702891 -38927229 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1475 1455 48 27 5 chr4 116702891 116703047 -38927073 - B2_Mm1a SINE B2 -37 156 1 5 1475 385 328 42 83 chr4 116703047 116703166 -38926954 - HAL1 LINE L1 -814 1693 1580 5 1475 1188 75 0 0 chr4 116703204 116703350 -38926770 - B1_Mus2 SINE Alu 0 147 2 5 1475 24 32 0 0 chr4 116703355 116703386 -38926734 + AT_rich Low_complexity Low_complexity 1 31 0 5 1475 235 300 0 99 chr4 116703562 116703673 -38926447 + MT2B LTR ERVL 158 257 -344 6 1475 568 176 14 10 chr4 116703577 116703711 -38926409 + B1_Mur4 SINE Alu 9 140 -8 6 1475 185 111 56 0 chr4 116704211 116704247 -38925873 + T-rich Low_complexity Low_complexity 2 39 0 6 1475 1063 45 0 0 chr4 116704260 116704392 -38925728 + B2_Mm2 SINE B2 1 132 -63 6 1475 501 254 34 0 chr4 116704390 116704508 -38925612 - B1F2 SINE Alu -26 123 2 6 1475 221 282 7 58 chr4 116704519 116704532 -38925588 + polypurine Low_complexity Low_complexity 2 13 0 6 1475 1164 81 0 7 chr4 116704532 116704681 -38925439 + B1_Mus1 SINE Alu 1 148 0 6 1475 221 282 7 58 chr4 116704681 116704768 -38925352 + GA-rich Low_complexity Low_complexity 14 97 0 6 1475 1261 34 0 0 chr4 116704768 116704915 -38925205 + B1_Mm SINE Alu 1 147 0 6 1475 221 282 7 58 chr4 116704915 116704952 -38925168 + polypurine Low_complexity Low_complexity 98 133 0 6 1475 187 31 0 59 chr4 116705506 116705540 -38924580 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1475 871 127 22 36 chr4 116705540 116705667 -38924453 - B1_Mur4 SINE Alu -7 143 14 6 1475 365 264 81 106 chr4 116705667 116705694 -38924426 - B4 SINE B4 -74 218 67 6 1475 325 179 134 0 chr4 116705696 116705763 -38924357 - PB1D10 SINE Alu -8 109 34 6 1475 372 330 0 0 chr4 116705973 116706064 -38924056 - PB1D10 SINE Alu -26 91 1 6 1475 842 73 8 0 chr4 116707577 116707700 -38922420 + (TC)n Simple_repeat Simple_repeat 2 125 0 6 1475 916 266 73 7 chr4 116707729 116708002 -38922118 + B4A SINE B4 2 292 0 6 1475 733 111 0 40 chr4 116708061 116708188 -38921932 - B1_Mur3 SINE Alu -1 148 29 6 1475 868 154 7 13 chr4 116708219 116708370 -38921750 - B1_Mur4 SINE Alu 0 150 1 6 1475 643 195 17 17 chr4 116708645 116708760 -38921360 - B1_Mur2 SINE Alu -29 120 6 6 1475 276 318 50 116 chr4 116708819 116709018 -38921102 - B2_Mm2 SINE B2 -1 194 9 6 1475 455 60 15 0 chr4 116709036 116709103 -38921017 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1475 320 248 19 0 chr4 116709104 116709209 -38920911 - L1M2 LINE L1 -3028 3115 3009 6 1475 429 304 36 48 chr4 116709236 116709402 -38920718 - RSINE1 SINE B4 0 165 2 6 1475 1243 27 7 0 chr4 116709554 116709700 -38920420 + B1_Mus2 SINE Alu 1 147 0 6 1475 263 289 0 24 chr4 116709760 116709845 -38920275 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 6 1475 1155 130 11 16 chr4 116709964 116710152 -38919968 - B2_Mm2 SINE B2 -7 188 2 6 1475 616 149 44 0 chr4 116710155 116710269 -38919851 - PB1D9 SINE Alu 0 120 2 6 1475 920 305 190 10 chr4 116710691 116711001 -38919119 + RCHARR1 DNA MER1_type 4 369 -605 6 1475 560 209 0 0 chr4 116711035 116711140 -38918980 + RSINE1 SINE B4 23 127 -38 6 1475 29 0 0 0 chr4 116711169 116711198 -38918922 + AT_rich Low_complexity Low_complexity 1 29 0 6 1475 464 227 69 15 chr4 116711198 116711328 -38918792 + RCHARR1 DNA MER1_type 652 788 -186 6 1475 843 229 44 24 chr4 116711421 116711627 -38918493 + B3 SINE B2 3 212 -4 6 1475 1389 66 33 0 chr4 116711767 116711949 -38918171 + B2_Mm2 SINE B2 2 189 -6 6 1475 306 0 0 0 chr4 116712187 116712221 -38917899 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1475 560 226 17 0 chr4 116712221 116712329 -38917791 - PB1D9 SINE Alu -8 112 3 6 1475 2334 139 83 61 chr4 116713683 116714143 -38915977 - RMER15 LTR ERVL -4 571 102 6 1475 1214 48 7 0 chr4 116714649 116714794 -38915326 - B1_Mm SINE Alu 0 147 2 6 1475 189 0 0 0 chr4 116714794 116714815 -38915305 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1475 540 248 47 33 chr4 116715158 116715174 -38914946 + ID_B1 SINE B4 67 218 -6 6 1475 773 187 67 0 chr4 116715174 116715308 -38914812 + B1_Mur3 SINE Alu 1 143 -6 6 1475 511 333 16 92 chr4 116715355 116715540 -38914580 - ID_B1 SINE B4 -53 171 1 6 1475 189 74 0 0 chr4 116715620 116715647 -38914473 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 6 1475 216 389 33 0 chr4 116716036 116716057 -38914063 - ID_B1 SINE B4 -127 97 7 6 1475 246 313 75 0 chr4 116716057 116716124 -38913996 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 6 1475 29 28 0 0 chr4 116716346 116716382 -38913738 + AT_rich Low_complexity Low_complexity 1 36 0 6 1475 215 152 0 21 chr4 116716382 116716429 -38913691 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1475 529 206 172 13 chr4 116716429 116716586 -38913534 - B3A SINE B2 -16 182 1 6 1475 208 51 103 0 chr4 116716760 116716799 -38913321 + T-rich Low_complexity Low_complexity 2 44 0 6 1475 330 214 81 23 chr4 116716836 116716922 -38913198 - HAL1-3A_ME LINE L1 -792 2066 1976 6 1475 357 148 0 0 chr4 116716922 116717003 -38913117 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1475 311 265 0 14 chr4 116717401 116717470 -38912650 - B1_Mur2 SINE Alu -20 129 62 6 1475 317 218 0 143 chr4 116717419 116717510 -38912610 - B3 SINE B2 -137 79 2 6 1475 1052 65 57 7 chr4 116717637 116717777 -38912343 - B1_Mus2 SINE Alu 0 147 1 6 1475 266 272 145 32 chr4 116717909 116718095 -38912025 - HAL1 LINE L1 -200 2307 2101 6 1475 1631 38 0 0 chr4 116718097 116718283 -38911837 - B2_Mm1a SINE B2 -7 186 1 6 1475 690 92 73 0 chr4 116718429 116718538 -38911582 - B1_Mur1 SINE Alu 0 149 33 6 1475 1120 60 0 0 chr4 116718695 116718829 -38911291 - B1_Mur4 SINE Alu -15 135 2 6 1475 318 132 0 0 chr4 116718894 116718947 -38911173 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1475 543 238 0 9 chr4 116718963 116719069 -38911051 - B1_Mus1 SINE Alu -43 105 1 6 1475 787 184 7 13 chr4 116719172 116719321 -38910799 + B1_Mur2 SINE Alu 2 149 0 6 1475 186 103 0 0 chr4 116719321 116719350 -38910770 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1475 210 119 23 23 chr4 116719452 116719495 -38910625 + T-rich Low_complexity Low_complexity 1 43 0 6 1475 303 320 9 37 chr4 116719547 116719654 -38910466 - PB1D10 SINE Alu -8 109 6 6 1475 994 221 0 16 chr4 116719721 116719914 -38910206 - B3 SINE B2 -26 190 1 6 1475 201 74 0 0 chr4 116720082 116720109 -38910011 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 1475 247 301 77 34 chr4 116720491 116720608 -38909512 - MLT1H LTR MaLR -225 324 203 6 1475 846 153 22 0 chr4 116720653 116720790 -38909330 + B1_Mur4 SINE Alu 2 141 -9 6 1475 464 231 62 81 chr4 116720777 116720796 -38909324 - B4 SINE B4 -66 226 162 6 1475 776 128 0 0 chr4 116720796 116720913 -38909207 - B1_Mur4 SINE Alu -33 117 1 6 1475 464 231 62 81 chr4 116720913 116720937 -38909183 - B4 SINE B4 -66 161 70 6 1475 620 127 71 26 chr4 116720951 116721064 -38909056 - PB1D9 SINE Alu -2 118 1 6 1475 324 230 50 23 chr4 116721068 116721209 -38908911 - B1_Mur4 SINE Alu 0 150 6 6 1475 313 200 50 0 chr4 116721275 116721335 -38908785 - L1MD LINE L1 -2460 3686 3624 6 1475 458 253 32 0 chr4 116722166 116722261 -38907859 + B1F1 SINE Alu 3 100 -49 6 1475 712 276 126 45 chr4 116722291 116722538 -38907582 - B4A SINE B4 -10 282 16 6 1475 1053 61 183 0 chr4 116722555 116722719 -38907401 - B2_Mm2 SINE B2 0 195 2 6 1475 1400 58 0 28 chr4 116722719 116722737 -38907383 - B2_Mm1a SINE B2 -19 174 161 6 1475 252 0 0 0 chr4 116722737 116722765 -38907355 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 6 1475 1400 58 0 28 chr4 116722765 116722924 -38907196 - B2_Mm1a SINE B2 -33 160 2 6 1475 707 169 81 0 chr4 116722970 116723094 -38907026 - B1_Mus1 SINE Alu 0 148 15 6 1475 245 332 98 58 chr4 116723132 116723337 -38906783 - MIR SINE MIR -42 220 8 6 1475 908 146 14 27 chr4 116723379 116723527 -38906593 + B1_Mus1 SINE Alu 3 148 0 6 1475 250 59 0 73 chr4 116723527 116723553 -38906567 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 6 1475 1191 48 7 0 chr4 116723553 116723698 -38906422 + B1_Mus2 SINE Alu 2 147 0 6 1475 250 59 0 73 chr4 116723698 116723726 -38906394 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1475 887 276 82 0 chr4 116723830 116724073 -38906047 - B4A SINE B4 0 292 30 6 1475 220 271 85 0 chr4 116724450 116724509 -38905611 - B4 SINE B4 -228 64 1 6 1475 215 397 103 0 chr4 116724517 116724595 -38905525 - B1F SINE Alu -63 86 1 6 1475 353 271 88 96 chr4 116724601 116724811 -38905309 - L1MC4 LINE L1 0 8042 7847 6 1475 855 82 11 202 chr4 116724811 116724994 -38905126 - B1_Mur4 SINE Alu -1 149 2 6 1475 353 271 88 96 chr4 116724994 116725158 -38904962 - L1MC4 LINE L1 -196 7846 7671 6 1475 358 293 77 10 chr4 116725765 116725972 -38904148 - L1MB2 LINE L1 -68 6103 5883 6 1475 1094 215 34 0 chr4 116726059 116726268 -38903852 - B3 SINE B2 0 216 1 6 1475 23 54 0 0 chr4 116726482 116726519 -38903601 + AT_rich Low_complexity Low_complexity 1 37 0 6 1475 658 240 13 20 chr4 116726547 116726696 -38903424 - RSINE1 SINE B4 -2 163 16 6 1475 469 270 21 49 chr4 116726828 116726972 -38903148 + B1_Mur1 SINE Alu 3 142 -7 6 1475 1677 26 5 0 chr4 116727295 116727486 -38902634 - B2_Mm1a SINE B2 0 193 2 6 1475 762 190 42 7 chr4 116727796 116727939 -38902181 + B1_Mur2 SINE Alu 2 149 0 6 1475 342 230 182 13 chr4 116728116 116728270 -38901850 - HAL1 LINE L1 -2240 267 88 6 1475 867 176 14 0 chr4 116728286 116728434 -38901686 + B1_Mur4 SINE Alu 1 150 0 6 1475 624 282 14 27 chr4 116728705 116728851 -38901269 - RSINE1 SINE B4 0 165 22 6 1475 271 203 141 0 chr4 116728907 116728971 -38901149 - ID4_ SINE ID -9 74 2 6 1475 676 293 33 11 chr4 116729614 116729788 -38900332 - B3A SINE B2 -10 206 27 6 1475 1256 34 7 0 chr4 116729809 116729955 -38900165 - B1_Mus2 SINE Alu 0 147 1 7 1475 372 22 0 0 chr4 116729998 116730043 -38900077 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1475 403 331 4 0 chr4 116730047 116730162 -38899958 + B1F SINE Alu 3 120 0 7 1475 438 184 51 0 chr4 116730167 116730265 -38899855 - Tigger7 DNA MER2_type -151 2340 2238 7 1475 872 143 0 21 chr4 116730270 116730413 -38899707 + B1_Mur1 SINE Alu 10 149 0 7 1475 987 101 14 0 chr4 116730480 116730618 -38899502 - B1_Mus1 SINE Alu -8 140 1 7 1475 539 262 98 0 chr4 116730649 116730771 -38899349 - B1_Mur1 SINE Alu -14 135 2 7 1475 1124 258 144 15 chr4 116730775 116731109 -38899011 - Tigger7 DNA MER2_type -2095 396 20 7 1475 759 87 43 0 chr4 116731562 116731677 -38898443 - RMER4A LTR ERVK 0 466 347 7 1475 517 156 226 11 chr4 116731697 116731970 -38898150 - RMER4A LTR ERVK -80 386 1 7 1475 593 255 60 42 chr4 116731993 116732161 -38897959 - B3A SINE B2 0 198 28 7 1475 1029 94 75 12 chr4 116732162 116732305 -38897815 + B2_Mm2 SINE B2 1 155 -40 7 1475 363 44 0 0 chr4 116732305 116732350 -38897770 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 7 1475 1029 94 75 12 chr4 116732350 116732367 -38897753 + B2_Mm2 SINE B2 156 171 -24 7 1475 655 210 72 0 chr4 116732490 116732628 -38897492 - B1_Mur1 SINE Alu 0 149 2 7 1475 231 384 0 0 chr4 116732700 116732773 -38897347 - ID4 SINE ID -2 81 9 7 1475 478 237 19 0 chr4 116732937 116733043 -38897077 + ID_B1 SINE B4 75 187 -105 7 1475 3525 112 39 32 chr4 116733323 116733886 -38896234 + RMER2 LTR ERV1 1 567 0 7 1475 215 323 32 0 chr4 116733927 116733989 -38896131 + ID4 SINE ID 6 69 -14 7 1475 835 196 0 40 chr4 116734087 116734236 -38895884 - B3 SINE B2 -47 169 27 7 1475 668 138 133 37 chr4 116734251 116734386 -38895734 - B1_Mus1 SINE Alu 0 148 1 7 1475 392 279 0 55 chr4 116734431 116734522 -38895598 + B1_Mur2 SINE Alu 52 137 -12 7 1475 378 281 17 26 chr4 116734933 116735050 -38895070 + PB1D10 SINE Alu 1 116 -1 7 1475 1027 126 223 0 chr4 116736100 116736275 -38893845 + B3 SINE B2 3 216 0 7 1475 482 260 89 0 chr4 116736425 116736548 -38893572 + RSINE1 SINE B4 30 163 -2 7 1475 237 351 52 35 chr4 116736687 116736802 -38893318 - RSINE1 SINE B4 -1 164 48 7 1475 272 295 0 0 chr4 116737122 116737183 -38892937 + B1F SINE Alu 2 62 -87 7 1475 272 122 20 0 chr4 116737213 116737262 -38892858 + B3 SINE B2 167 216 0 7 1475 439 357 50 0 chr4 116737283 116737423 -38892697 + B4A SINE B4 85 231 -61 7 1475 863 118 65 29 chr4 116737430 116737569 -38892551 + B1_Mur4 SINE Alu 7 150 0 7 1475 627 253 43 87 chr4 116737433 116737641 -38892479 + B4A SINE B4 94 292 0 7 1475 1184 68 0 0 chr4 116738721 116738869 -38891251 + B1_Mus1 SINE Alu 1 148 0 7 1475 262 361 0 0 chr4 116739439 116739511 -38890609 + ID_B1 SINE B4 78 149 -75 7 1475 508 194 18 36 chr4 116739514 116739626 -38890494 + PB1D10 SINE Alu 3 112 -5 7 1475 615 269 68 6 chr4 116739733 116739894 -38890226 + ID_B1 SINE B4 39 209 -15 7 1475 1387 68 20 35 chr4 116739961 116740158 -38889962 + B2_Mm2 SINE B2 1 194 -1 7 1475 618 302 20 7 chr4 116741584 116741734 -38888386 + RSINE1 SINE B4 4 155 -10 7 1475 351 0 0 0 chr4 116741737 116741776 -38888344 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1475 289 222 143 100 chr4 116741794 116741934 -38888186 + B1F1 SINE Alu 4 149 0 7 1475 254 194 120 40 chr4 116741939 116742014 -38888106 + ID4_ SINE ID 3 83 0 7 1475 458 99 0 0 chr4 116742024 116742095 -38888025 + L1_Mus2 LINE L1 6496 6566 0 7 1475 376 326 22 7 chr4 116742132 116742271 -38887849 + B1F1 SINE Alu 1 141 -8 7 1475 698 183 25 0 chr4 116742294 116742414 -38887706 + B1_Mur1 SINE Alu 13 135 -14 7 1475 192 77 0 0 chr4 116742436 116742462 -38887658 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1475 430 235 48 19 chr4 116742481 116742585 -38887535 + PB1D10 SINE Alu 2 108 -9 7 1475 207 0 0 0 chr4 116742761 116742784 -38887336 + (TTGG)n Simple_repeat Simple_repeat 4 26 0 7 1475 737 196 23 0 chr4 116742784 116742917 -38887203 - B1_Mur2 SINE Alu -13 136 1 7 1475 230 159 154 34 chr4 116742920 116742992 -38887128 + PB1D7 SINE Alu 21 96 -21 7 1475 383 298 40 24 chr4 116743758 116743904 -38886216 - B1F SINE Alu -9 140 2 7 1475 311 254 0 0 chr4 116743922 116743985 -38886135 + RMER30 DNA MER1_type 11 73 -129 7 1475 595 261 35 7 chr4 116743988 116744070 -38886050 + B4A SINE B4 1 86 -206 7 1475 219 377 33 50 chr4 116744070 116744190 -38885930 + PB1D9 SINE Alu 1 118 -2 7 1475 774 268 15 26 chr4 116744261 116744456 -38885664 + B3A SINE B2 1 193 -5 7 1475 420 198 35 0 chr4 116744548 116744634 -38885486 + ID_B1 SINE B4 136 224 0 7 1475 286 271 78 54 chr4 116744753 116744882 -38885238 + B1F SINE Alu 18 149 0 7 1475 532 257 81 0 chr4 116744884 116745020 -38885100 + B1_Mm SINE Alu 1 147 0 7 1475 417 208 76 38 chr4 116745044 116745149 -38884971 - B1_Mur1 SINE Alu -27 122 14 7 1475 640 222 10 1 chr4 116745157 116745285 -38884835 - B1_Mur4 SINE Alu -11 139 10 7 1475 24 0 0 0 chr4 116745289 116745313 -38884807 + AT_rich Low_complexity Low_complexity 1 24 0 7 1475 232 297 95 0 chr4 116745329 116745403 -38884717 + 4.5SRNA scRNA scRNA 7 87 -7 7 1475 301 228 165 0 chr4 116745342 116745421 -38884699 + PB1D7 SINE Alu 29 120 0 7 1475 384 266 0 0 chr4 116745723 116745802 -38884318 + B3 SINE B2 7 85 -131 7 1475 395 211 19 87 chr4 116745777 116745881 -38884239 + PB1D9 SINE Alu 24 120 0 7 1475 339 244 51 0 chr4 116745901 116745979 -38884141 + PB1D7 SINE Alu 37 118 -2 7 1475 389 282 106 78 chr4 116746447 116746731 -38883389 + B4 SINE B4 1 292 0 7 1475 210 71 0 0 chr4 116746851 116746879 -38883241 + (CATA)n Simple_repeat Simple_repeat 2 29 0 7 1475 543 71 0 14 chr4 116746938 116747009 -38883111 + B2_Mm2 SINE B2 6 75 -120 7 1475 253 174 0 0 chr4 116747028 116747074 -38883046 - ID_B1 SINE B4 -2 222 177 7 1475 226 195 0 0 chr4 116747068 116747109 -38883011 - B3 SINE B2 -167 49 9 7 1475 762 237 0 0 chr4 116747150 116747302 -38882818 - B3A SINE B2 -46 152 1 7 1475 314 298 20 78 chr4 116747317 116747470 -38882650 - B1F1 SINE Alu -5 144 1 7 1475 357 222 35 121 chr4 116747500 116747535 -38882585 + YREP_Mm Unknown Unknown 159 314 -1495 7 1475 606 267 0 37 chr4 116747535 116747671 -38882449 - ID_B1 SINE B4 -13 211 81 7 1475 219 295 16 0 chr4 116747773 116747834 -38882286 + ID4_ SINE ID 4 65 -18 7 1475 351 264 69 52 chr4 116747880 116747996 -38882124 + B1F2 SINE Alu 1 118 -2 7 1475 410 283 31 23 chr4 116748092 116748222 -38881898 + B3A SINE B2 67 197 -1 7 1475 643 280 45 7 chr4 116748219 116748398 -38881722 + B4A SINE B4 56 246 -46 7 1475 631 239 94 0 chr4 116748388 116748526 -38881594 + RSINE1 SINE B4 5 155 -10 7 1475 306 196 0 0 chr4 116748540 116748596 -38881524 + B4A SINE B4 217 272 -20 7 1475 195 42 0 0 chr4 116748713 116748737 -38881383 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1475 510 266 24 0 chr4 116749004 116749128 -38880992 + B1F SINE Alu 2 128 -21 7 1475 382 221 17 17 chr4 116749128 116749243 -38880877 + GA-rich Low_complexity Low_complexity 1 115 0 7 1475 216 67 0 0 chr4 116749400 116749430 -38880690 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 1475 380 214 153 12 chr4 116749430 116749508 -38880612 - PB1D9 SINE Alu -10 110 20 7 1475 1909 231 99 18 chr4 116749877 116750371 -38879749 - RMER5 LTR ERV1 0 534 1 7 1475 272 27 27 0 chr4 116750387 116750424 -38879696 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1475 1031 101 0 0 chr4 116750424 116750562 -38879558 - B1_Mus1 SINE Alu -10 138 1 7 1475 632 183 90 15 chr4 116751365 116751498 -38878622 + B1_Mm SINE Alu 5 147 0 7 1475 619 273 0 118 chr4 116751728 116751915 -38878205 - RSINE1 SINE B4 0 165 1 7 1475 199 224 121 0 chr4 116751970 116752028 -38878092 + MIR SINE MIR 194 258 -4 7 1475 342 192 198 48 chr4 116752051 116752177 -38877943 + B1_Mm SINE Alu 3 147 0 7 1475 266 189 19 0 chr4 116752192 116752245 -38877875 + B4A SINE B4 3 56 -236 7 1475 27 49 0 0 chr4 116752260 116752301 -38877819 + AT_rich Low_complexity Low_complexity 1 41 0 7 1475 1224 105 29 0 chr4 116752302 116752474 -38877646 + B2_Mm1a SINE B2 1 177 -16 7 1475 433 111 181 0 chr4 116752489 116752593 -38877527 + B2_Mm2 SINE B2 47 191 -2 7 1475 889 164 0 33 chr4 116752606 116752744 -38877376 + B1_Mus1 SINE Alu 2 139 -9 7 1475 267 31 0 0 chr4 116752744 116752776 -38877344 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1475 889 164 0 33 chr4 116752776 116752788 -38877332 + B1_Mus1 SINE Alu 140 147 -1 7 1475 223 320 135 94 chr4 116753013 116753062 -38877058 + B4 SINE B4 38 139 -153 7 1475 412 210 184 14 chr4 116753062 116753187 -38876933 + B1_Mur2 SINE Alu 1 142 -8 7 1475 223 320 135 94 chr4 116753187 116753258 -38876862 + B4 SINE B4 140 292 0 7 1475 1411 54 43 0 chr4 116753278 116753463 -38876657 + B2_Mm1a SINE B2 1 193 0 7 1475 252 0 0 0 chr4 116753533 116753561 -38876559 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1475 229 265 20 0 chr4 116753590 116753639 -38876481 + B1F2 SINE Alu 2 51 -98 7 1475 658 174 16 67 chr4 116753662 116753833 -38876287 + PB1D9 SINE Alu 9 149 0 7 1475 836 102 17 0 chr4 116754514 116754632 -38875488 + PB1D9 SINE Alu 1 120 0 7 1475 189 0 0 0 chr4 116754863 116754884 -38875236 + (GGTTG)n Simple_repeat Simple_repeat 1 21 0 7 1475 946 150 7 39 chr4 116754886 116755039 -38875081 - B1_Mur4 SINE Alu 0 150 3 8 1475 344 250 20 59 chr4 116755280 116755382 -38874738 - Lx8 LINE L1 -850 6623 6526 8 1475 245 164 15 76 chr4 116755380 116755446 -38874674 + Lx4B LINE L1 6993 7054 -4 8 1475 924 172 39 63 chr4 116755459 116755664 -38874456 - Lx8 LINE L1 -934 6539 6340 8 1475 498 271 76 23 chr4 116755705 116755837 -38874283 + B1_Mur1 SINE Alu 3 141 -8 8 1475 840 263 39 0 chr4 116755837 116756016 -38874104 + B3 SINE B2 1 186 -30 8 1475 1944 99 56 65 chr4 116756102 116756426 -38873694 - ORR1A4 LTR MaLR -8 321 1 8 1475 1008 268 26 0 chr4 116756513 116756741 -38873379 + B4A SINE B4 1 234 -58 8 1475 228 156 44 0 chr4 116756742 116756787 -38873333 + MT2B LTR ERVL 167 213 -388 8 1475 31 26 0 0 chr4 116756810 116756848 -38873272 + AT_rich Low_complexity Low_complexity 1 38 0 8 1475 1130 52 0 0 chr4 116757281 116757417 -38872703 + B2_Mm1t SINE B2 25 160 -33 8 1475 222 37 0 0 chr4 116757417 116757444 -38872676 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1475 1015 101 0 20 chr4 116757444 116757460 -38872660 + B2_Mm2 SINE B2 159 174 -21 8 1475 1335 44 0 0 chr4 116757462 116757621 -38872499 + B2_Mm1t SINE B2 2 160 -33 8 1475 222 37 0 0 chr4 116757621 116757648 -38872472 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1475 501 284 52 78 chr4 116757756 116758029 -38872091 - B4 SINE B4 -17 275 48 8 1475 243 290 139 39 chr4 116758132 116758261 -38871859 + Tigger7 DNA MER2_type 2168 2309 -182 8 1475 569 223 0 152 chr4 116758323 116758415 -38871705 - ID_B1 SINE B4 0 224 144 8 1475 1193 75 0 0 chr4 116758415 116758561 -38871559 - B1_Mus2 SINE Alu 0 147 2 8 1475 569 223 0 152 chr4 116758561 116758632 -38871488 - ID_B1 SINE B4 -81 143 86 8 1475 1267 30 140 12 chr4 116758748 116758919 -38871201 + B2_Mm2 SINE B2 1 193 -2 8 1475 632 208 58 0 chr4 116758919 116759039 -38871081 + B1_Mus1 SINE Alu 2 128 -20 8 1475 471 177 20 20 chr4 116759450 116759548 -38870572 + BC1_Mm scRNA scRNA 3 100 -52 8 1475 781 223 0 0 chr4 116759784 116759923 -38870197 + ID_B1 SINE B4 86 224 0 8 1475 23 0 0 0 chr4 116760037 116760060 -38870060 + AT_rich Low_complexity Low_complexity 1 23 0 8 1475 1101 45 45 0 chr4 116760061 116760195 -38869925 - B1_Mus2 SINE Alu -6 141 2 8 1475 21 0 0 0 chr4 116760198 116760219 -38869901 + AT_rich Low_complexity Low_complexity 1 21 0 8 1475 842 158 22 0 chr4 116761230 116761369 -38868751 + ID_B1 SINE B4 83 224 0 8 1475 540 222 25 25 chr4 116761380 116761500 -38868620 + PB1D9 SINE Alu 1 120 0 8 1475 216 0 0 0 chr4 116761664 116761688 -38868432 + (G)n Simple_repeat Simple_repeat 1 24 0 8 1475 238 306 26 93 chr4 116761729 116761880 -38868240 + Charlie9 DNA MER1_type 2396 2536 -221 8 1475 504 206 221 0 chr4 116761875 116762006 -38868114 - B3A SINE B2 -38 160 1 8 1475 260 184 0 49 chr4 116762629 116762693 -38867427 + B1_Mus2 SINE Alu 1 56 -64 8 1475 211 234 85 0 chr4 116762652 116762699 -38867421 + ID_B1 SINE B4 97 147 -77 8 1475 370 202 73 92 chr4 116762961 116763070 -38867050 + PB1 SINE Alu 21 127 0 8 1475 1223 61 0 0 chr4 116763468 116763615 -38866505 + B1_Mus2 SINE Alu 1 147 0 8 1475 255 31 0 0 chr4 116763723 116763755 -38866365 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1475 633 294 14 7 chr4 116763814 116763961 -38866159 + ID_B1 SINE B4 1 148 -76 8 1475 637 165 64 0 chr4 116764002 116764111 -38866009 + B1_Mur4 SINE Alu 22 137 -13 8 1475 387 0 0 0 chr4 116764111 116764154 -38865966 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 8 1475 207 0 0 0 chr4 116764282 116764305 -38865815 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1475 368 230 86 112 chr4 116764340 116764492 -38865628 + B4 SINE B4 76 223 -69 8 1475 822 116 62 0 chr4 116764365 116764494 -38865626 + B1_Mur3 SINE Alu 13 149 0 8 1475 738 204 41 21 chr4 116764746 116764891 -38865229 - B1_Mur3 SINE Alu -1 148 1 8 1475 423 213 160 0 chr4 116764922 116765016 -38865104 + B3A SINE B2 6 114 -84 8 1475 2236 68 55 0 chr4 116765007 116765316 -38864804 - MT-int LTR MaLR -64 1034 709 8 1475 253 296 66 36 chr4 116765239 116765376 -38864744 + B3A SINE B2 40 180 -18 8 1475 371 226 15 122 chr4 116765590 116765721 -38864399 + MT2B LTR ERVL 141 257 -344 8 1475 659 146 100 0 chr4 116765631 116765741 -38864379 + B1_Mur3 SINE Alu 9 129 -20 8 1475 1201 89 7 3 chr4 116765748 116766042 -38864078 + (GAAA)n Simple_repeat Simple_repeat 1 295 0 8 1475 271 283 0 0 chr4 116766047 116766100 -38864020 + PB1D10 SINE Alu 1 53 -64 8 1475 1481 53 26 0 chr4 116766149 116766338 -38863782 + B2_Mm2 SINE B2 1 194 -1 8 1475 1594 31 5 10 chr4 116766481 116766674 -38863446 + B2_Mm1t SINE B2 2 193 0 8 1475 771 262 29 86 chr4 116766934 116766991 -38863129 - B3A SINE B2 -1 197 158 8 1475 495 0 0 0 chr4 116766991 116767046 -38863074 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1475 771 262 29 86 chr4 116767046 116767197 -38862923 - B3A SINE B2 -41 157 1 8 1475 357 224 32 34 chr4 116767346 116767443 -38862677 + L1M5 LINE L1 5577 5671 -569 8 1475 532 178 18 41 chr4 116767591 116767718 -38862402 - B1_Mur2 SINE Alu 0 149 34 8 1475 257 222 0 0 chr4 116767917 116767971 -38862149 + ID_B1 SINE B4 169 222 -2 8 1475 22 0 0 0 chr4 116767972 116767994 -38862126 + AT_rich Low_complexity Low_complexity 1 22 0 8 1475 271 208 19 0 chr4 116769761 116769814 -38860306 - ID4 SINE ID -8 75 22 8 1475 292 341 0 12 chr4 116770113 116770199 -38859921 + PB1 SINE Alu 23 107 -20 8 1475 531 82 0 0 chr4 116770224 116770297 -38859823 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 8 1475 529 193 11 214 chr4 116770409 116770587 -38859533 + B1_Mus1 SINE Alu 7 148 0 8 1475 225 348 22 0 chr4 116771438 116771527 -38858593 - PB1D10 SINE Alu -1 116 26 8 1475 217 68 0 43 chr4 116771719 116771765 -38858355 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 8 1475 334 179 192 0 chr4 116771818 116771896 -38858224 + B1_Mus1 SINE Alu 2 94 -54 8 1475 438 216 49 83 chr4 116771839 116772008 -38858112 + MT2B LTR ERVL 132 287 -314 8 1475 1140 43 0 0 chr4 116771904 116772043 -38858077 + B1_Mm SINE Alu 9 147 0 8 1475 28 0 0 0 chr4 116772089 116772117 -38858003 + AT_rich Low_complexity Low_complexity 1 28 0 8 1475 784 246 65 14 chr4 116772153 116772364 -38857756 + B4A SINE B4 9 230 -62 8 1475 357 213 13 26 chr4 116772364 116772441 -38857679 + B3A SINE B2 1 76 -122 8 1475 381 43 0 0 chr4 116772459 116772506 -38857614 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1475 229 309 47 58 chr4 116772507 116772593 -38857527 + B4A SINE B4 119 203 -89 8 1475 249 371 72 8 chr4 116772982 116773107 -38857013 - MLT1L LTR MaLR -77 533 401 8 1475 973 205 83 36 chr4 116773180 116773458 -38856662 + B4A SINE B4 2 292 0 8 1475 366 265 0 0 chr4 116773462 116773628 -38856492 + (CA)n Simple_repeat Simple_repeat 1 166 0 8 1475 232 244 0 0 chr4 116773705 116773750 -38856370 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 8 1475 1018 241 15 0 chr4 116774168 116774371 -38855749 - B3 SINE B2 -7 209 4 8 1475 308 152 0 165 chr4 116774814 116774893 -38855227 + ID_B1 SINE B4 159 224 0 8 1475 300 264 56 0 chr4 116774919 116774991 -38855129 + ID4_ SINE ID 7 82 -1 8 1475 246 204 174 55 chr4 116774966 116775034 -38855086 + PB1D7 SINE Alu 23 144 -5 8 1475 259 171 0 0 chr4 116775034 116775075 -38855045 + ID_B1 SINE B4 179 219 -5 8 1475 1025 97 229 0 chr4 116775366 116775541 -38854579 - B3 SINE B2 0 216 2 8 1475 269 271 15 113 chr4 116776076 116776101 -38854019 + MT2B LTR ERVL 146 157 -444 8 1475 652 234 8 0 chr4 116776101 116776225 -38853895 + B1F1 SINE Alu 3 127 -22 8 1475 603 187 108 36 chr4 116776420 116776559 -38853561 + B1_Mur3 SINE Alu 1 149 0 8 1475 1525 43 27 0 chr4 116778877 116779063 -38851057 - B2_Mm1a SINE B2 -1 192 2 8 1475 549 295 24 68 chr4 116779108 116779315 -38850805 - B3A SINE B2 0 198 1 8 1475 550 209 54 9 chr4 116779398 116779509 -38850611 - B1_Mur1 SINE Alu -11 138 23 8 1475 334 321 37 30 chr4 116779509 116779533 -38850587 - ID_B1 SINE B4 -11 213 78 8 1475 229 326 34 116 chr4 116779522 116779552 -38850568 - B3 SINE B2 0 216 188 8 1475 714 34 0 0 chr4 116779552 116779641 -38850479 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1475 243 325 56 42 chr4 116779641 116779756 -38850364 - B3A SINE B2 -29 187 83 8 1475 480 18 0 0 chr4 116779913 116779970 -38850150 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1475 354 23 0 0 chr4 116779970 116780012 -38850108 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1475 231 289 122 28 chr4 116780015 116780122 -38849998 - ID_B1 SINE B4 -100 124 8 8 1475 638 281 0 61 chr4 116780166 116780329 -38849791 + RSINE1 SINE B4 11 163 -2 8 1475 639 231 24 24 chr4 116780302 116780466 -38849654 - B2_Mm2 SINE B2 -29 166 3 8 1475 198 342 39 46 chr4 116781639 116781792 -38848328 + MIR SINE MIR 105 256 -6 8 1475 547 226 68 25 chr4 116784355 116784475 -38845645 + B3 SINE B2 47 167 -49 8 1475 180 77 0 0 chr4 116784475 116784501 -38845619 + (CATG)n Simple_repeat Simple_repeat 1 26 0 8 1475 547 226 68 25 chr4 116784501 116784543 -38845577 + B3 SINE B2 168 216 0 8 1475 1383 103 0 25 chr4 116784543 116784743 -38845377 + B2_Mm2 SINE B2 1 195 0 8 1475 231 36 0 0 chr4 116784854 116784882 -38845238 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1475 232 275 45 91 chr4 116784884 116784972 -38845148 + PB1D10 SINE Alu 25 108 -9 9 1475 330 239 56 0 chr4 116785009 116785080 -38845040 - ID_B1 SINE B4 -7 217 143 9 184 700 225 16 40 chr4 116785088 116785272 -38844848 - B3 SINE B2 -14 181 3 9 1476 207 0 0 0 chr4 116785426 116785449 -38844671 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 9 1476 1248 48 0 0 chr4 116785458 116785603 -38844517 - B1_Mus2 SINE Alu -2 145 1 9 1476 1243 210 0 0 chr4 116785616 116785830 -38844290 - B3 SINE B2 0 216 3 9 1476 914 140 85 23 chr4 116785941 116786117 -38844003 + B2_Mm2 SINE B2 1 187 -8 9 1476 204 125 0 0 chr4 116788704 116788736 -38841384 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1476 1169 70 0 0 chr4 116788799 116788942 -38841178 + B1_Mus2 SINE Alu 2 144 -3 9 1476 357 24 0 0 chr4 116788942 116788984 -38841136 + (CATA)n Simple_repeat Simple_repeat 2 43 0 9 1476 1215 75 0 0 chr4 116789574 116789721 -38840399 + B1_Mus1 SINE Alu 2 148 0 9 1476 436 254 148 7 chr4 116789877 116790012 -38840108 - RSINE1 SINE B4 -1 164 11 9 1476 724 187 29 7 chr4 116790048 116790188 -38839932 + B1_Mur4 SINE Alu 8 150 0 9 1476 1223 94 5 52 chr4 116790202 116790393 -38839727 + B2_Mm2 SINE B2 1 182 -13 9 1476 661 278 107 35 chr4 116790395 116790712 -38839408 - RMER5 LTR ERV1 -194 340 1 9 1476 798 147 40 40 chr4 116791108 116791257 -38838863 - B1_Mur4 SINE Alu -1 149 1 9 1476 281 310 83 66 chr4 116791312 116791326 -38838794 + ID SINE ID 70 85 -139 9 1476 427 243 17 177 chr4 116791326 116791501 -38838619 + B1F1 SINE Alu 3 149 0 9 1476 259 269 176 8 chr4 116791831 116791846 -38838274 - B4A SINE B4 -55 237 144 9 1476 358 250 37 46 chr4 116791846 116791955 -38838165 - PB1D7 SINE Alu -6 114 7 9 1476 1266 41 0 0 chr4 116792084 116792230 -38837890 + B1_Mus2 SINE Alu 2 147 0 9 1476 203 0 0 36 chr4 116792230 116792258 -38837862 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1476 270 327 77 34 chr4 116792503 116792515 -38837605 + B4 SINE B4 77 93 -199 9 1476 500 271 47 0 chr4 116792515 116792644 -38837476 + B1_Mur1 SINE Alu 1 135 -14 9 1476 728 134 83 38 chr4 116794351 116794483 -38835637 - B1_Mus2 SINE Alu 0 147 10 9 1476 477 205 99 60 chr4 116794402 116794584 -38835536 - MT2B LTR ERVL -345 256 68 9 1476 390 224 141 0 chr4 116794516 116794601 -38835519 - PB1D9 SINE Alu -23 97 1 9 1476 790 244 33 47 chr4 116795346 116795561 -38834559 - ID_B1 SINE B4 -10 214 3 9 1476 1143 75 7 0 chr4 116795588 116795734 -38834386 - B1_Mus1 SINE Alu 0 148 2 9 1476 184 292 71 30 chr4 116795840 116795939 -38834181 + L2b LINE L2 3051 3153 -222 9 1476 398 171 114 0 chr4 116795992 116796080 -38834040 - B1F SINE Alu -8 141 44 9 1476 225 286 0 0 chr4 116796391 116796447 -38833673 + G-rich Low_complexity Low_complexity 1 56 0 9 1476 288 242 58 48 chr4 116800009 116800113 -38830007 + B1_Mus1 SINE Alu 6 110 -38 9 1476 383 202 33 11 chr4 116800024 116800114 -38830006 + ID_B1 SINE B4 99 190 -34 9 1476 717 186 0 8 chr4 116800110 116800240 -38829880 + B1_Mur3 SINE Alu 21 149 0 9 1476 1163 74 0 7 chr4 116800257 116800406 -38829714 + B1_Mus1 SINE Alu 1 148 0 9 1476 1275 93 21 52 chr4 116802122 116802314 -38827806 - B2_Mm2 SINE B2 -9 186 1 9 1476 1278 102 32 11 chr4 116802316 116802504 -38827616 - B2_Mm2 SINE B2 -2 193 2 9 1476 34 42 0 0 chr4 116806383 116806431 -38823689 + GC_rich Low_complexity Low_complexity 1 48 0 9 1476 21 0 0 0 chr4 116806511 116806532 -38823588 + GC_rich Low_complexity Low_complexity 1 21 0 9 1476 704 138 0 0 chr4 116807145 116807254 -38822866 - B1_Mus1 SINE Alu 0 148 40 9 1476 330 352 0 9 chr4 116807338 116807444 -38822676 - PB1D10 SINE Alu -11 106 2 9 1476 878 130 27 27 chr4 116807818 116807968 -38822152 - B1_Mur4 SINE Alu 0 150 1 9 1476 222 320 43 64 chr4 116808053 116808240 -38821880 - L2c LINE L2 -3 3384 3202 9 1476 306 0 0 0 chr4 116808407 116808441 -38821679 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1476 585 311 61 9 chr4 116808668 116808882 -38821238 + MTD LTR MaLR 1 225 -194 9 1476 313 293 112 35 chr4 116808874 116809044 -38821076 + B2_Mm2 SINE B2 5 187 -8 9 1476 740 196 127 16 chr4 116809037 116809236 -38820884 + MTD LTR MaLR 195 405 -14 9 1476 305 172 455 0 chr4 116809297 116809442 -38820678 + B3 SINE B2 5 215 -1 9 1476 268 236 108 27 chr4 116809479 116809553 -38820567 - ID SINE ID -141 83 4 9 1476 26 0 0 0 chr4 116809652 116809678 -38820442 + AT_rich Low_complexity Low_complexity 1 26 0 9 1476 1507 62 0 40 chr4 116809737 116809939 -38820181 - B2_Mm2 SINE B2 -1 194 1 9 1476 1577 47 0 16 chr4 116809948 116810142 -38819978 - B2_Mm1a SINE B2 -2 191 1 9 1476 25 31 0 0 chr4 116810145 116810177 -38819943 + AT_rich Low_complexity Low_complexity 1 32 0 9 1476 244 191 0 0 chr4 116810327 116810374 -38819746 - RLTR24 LTR ERV1 -28 501 455 9 1476 497 148 0 12 chr4 116810370 116810452 -38819668 + B1_Mus2 SINE Alu 66 146 -1 9 1476 1143 49 21 0 chr4 116810460 116810602 -38819518 + B1_Mus1 SINE Alu 3 147 -1 9 1476 525 136 66 11 chr4 116810647 116810770 -38819350 - B1_Mus2 SINE Alu -23 126 1 9 1476 293 219 95 24 chr4 116810696 116810780 -38819340 - B4A SINE B4 -125 167 78 9 1476 724 139 6 20 chr4 116810820 116810959 -38819161 - B1_Mus2 SINE Alu -2 145 14 9 1476 225 335 83 63 chr4 116811123 116811381 -38818739 - RMER10A LTR ERVL -12 430 166 9 1476 681 56 0 0 chr4 116811381 116811471 -38818649 + (GGGGA)n Simple_repeat Simple_repeat 1 90 0 9 1476 225 335 83 63 chr4 116811471 116811623 -38818497 - RMER10A LTR ERVL -277 165 12 9 1476 582 262 37 6 chr4 116811658 116811819 -38818301 + ID_B1 SINE B4 56 221 -3 9 1476 824 196 13 7 chr4 116811823 116811972 -38818148 + B1_Mur4 SINE Alu 1 150 0 9 1476 1038 158 37 21 chr4 116811976 116812164 -38817956 + B2_Mm2 SINE B2 4 194 -1 9 1476 328 257 181 0 chr4 116812261 116812366 -38817754 + ID_B1 SINE B4 101 224 0 9 1476 23 0 0 0 chr4 116812368 116812391 -38817729 + AT_rich Low_complexity Low_complexity 1 23 0 9 1476 1211 34 0 26 chr4 116812444 116812595 -38817525 + B1_Mm SINE Alu 1 147 0 9 1476 354 208 84 188 chr4 116813216 116813254 -38816866 + B3A SINE B2 2 39 -159 9 1476 546 56 0 0 chr4 116813254 116813325 -38816795 + L1_Mus2 LINE L1 6496 6566 0 9 1476 632 186 33 78 chr4 116813325 116813515 -38816605 + B2_Mm2 SINE B2 27 194 -1 9 1476 197 344 92 26 chr4 116813762 116813926 -38816194 - MIR SINE MIR -19 243 68 9 1476 284 307 92 42 chr4 116814229 116814348 -38815772 + RSINE1 SINE B4 29 153 -12 9 1476 325 257 81 0 chr4 116814424 116814498 -38815622 + RSINE1 SINE B4 23 102 -63 9 1476 699 148 101 8 chr4 116814551 116814680 -38815440 + B1_Mur4 SINE Alu 1 141 -9 9 1476 848 161 6 0 chr4 116814684 116814846 -38815274 + GA-rich Low_complexity Low_complexity 4 166 0 9 1476 469 290 132 66 chr4 116814857 116815130 -38814990 + B4 SINE B4 1 291 -1 9 1476 563 54 21 21 chr4 116815131 116815225 -38814895 + (GA)n Simple_repeat Simple_repeat 1 94 0 9 1476 994 254 0 19 chr4 116815231 116815440 -38814680 + ID_B1 SINE B4 2 206 -18 9 1476 203 250 147 0 chr4 116815505 116815573 -38814547 - MIR SINE MIR -47 215 138 9 1476 517 252 0 0 chr4 116815622 116815729 -38814391 + ID_B1 SINE B4 94 200 -24 9 1476 313 336 87 7 chr4 116816148 116816286 -38813834 + HAL1-3A_ME LINE L1 2286 2434 -424 9 1476 351 319 87 22 chr4 116816649 116816832 -38813288 + MIRb SINE MIR 66 260 -8 9 1476 448 198 84 9 chr4 116817252 116817359 -38812761 - PB1D10 SINE Alu 0 117 3 9 1476 234 294 55 62 chr4 116817359 116817421 -38812699 - MT2B LTR ERVL -434 167 107 9 1476 1255 48 0 0 chr4 116817576 116817723 -38812397 + B1_Mm SINE Alu 1 147 0 9 1476 216 0 0 0 chr4 116817723 116817747 -38812373 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1476 412 242 0 50 chr4 116819347 116819447 -38810673 - B1F SINE Alu -5 144 50 9 1476 380 237 19 67 chr4 116819448 116819552 -38810568 - MIR SINE MIR -47 215 117 9 1476 830 175 14 20 chr4 116819976 116820122 -38809998 + B1_Mur2 SINE Alu 2 146 -3 9 1476 1250 100 82 22 chr4 116821975 116822159 -38807961 + B2_Mm2 SINE B2 1 195 0 9 1476 227 222 188 16 chr4 116822516 116822580 -38807540 - PB1D10 SINE Alu -18 99 25 9 1476 1141 62 7 0 chr4 116822737 116822883 -38807237 - B1_Mus2 SINE Alu 0 147 1 9 1476 294 282 14 41 chr4 116822912 116823035 -38807085 - RSINE1 SINE B4 -171 121 5 9 1476 225 241 103 0 chr4 116823058 116823145 -38806975 + B1_Mur4 SINE Alu 32 127 -23 9 1476 277 311 140 9 chr4 116823272 116823379 -38806741 - RSINE1 SINE B4 -33 132 12 9 1476 571 178 101 8 chr4 116823576 116823695 -38806425 - B3 SINE B2 -86 130 1 9 1476 1278 14 7 0 chr4 116823748 116823894 -38806226 + B1_Mus2 SINE Alu 1 147 0 9 1476 212 286 47 16 chr4 116824109 116824161 -38805959 + PB1D7 SINE Alu 29 82 -38 9 1476 324 289 55 75 chr4 116824161 116824307 -38805813 + B3A SINE B2 1 143 -55 9 1476 222 231 200 0 chr4 116824425 116824490 -38805630 + B3 SINE B2 2 79 -137 9 1476 200 51 0 93 chr4 116824587 116824604 -38805516 + (A)n Simple_repeat Simple_repeat 1 15 0 9 1476 1600 47 5 0 chr4 116824604 116824794 -38805326 + B2_Mm1t SINE B2 1 191 -2 1 1476 200 51 0 93 chr4 116824794 116824819 -38805301 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1476 452 284 24 81 chr4 116824907 116824987 -38805133 + ID_B1 SINE B4 19 217 -7 1 1476 779 117 23 23 chr4 116824987 116825118 -38805002 + B1_Mur4 SINE Alu 13 143 -7 1 1476 324 304 59 33 chr4 116825117 116825141 -38804979 + ID_B1 SINE B4 64 217 -4 1 1476 484 216 95 8 chr4 116825141 116825267 -38804853 + B1_Mur1 SINE Alu 6 142 -7 1 1476 357 303 35 35 chr4 116825550 116825663 -38804457 + B4A SINE B4 18 130 -162 1 1476 207 0 0 0 chr4 116828940 116828963 -38801157 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1476 1162 61 0 26 chr4 116828964 116829115 -38801005 + B1_Mm SINE Alu 1 147 0 1 1476 211 261 0 0 chr4 116829291 116829337 -38800783 - B3A SINE B2 -123 75 30 1 1476 264 281 125 0 chr4 116829389 116829485 -38800635 + PB1D7 SINE Alu 2 109 -11 1 1476 1539 58 5 0 chr4 116829756 116829946 -38800174 - B2_Mm1a SINE B2 -2 191 1 1 1476 198 43 20 80 chr4 116829979 116830029 -38800091 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1476 1211 41 7 7 chr4 116830031 116830178 -38799942 - B1_Mm SINE Alu 0 147 1 1 1476 22 80 0 0 chr4 116830185 116830235 -38799885 + AT_rich Low_complexity Low_complexity 1 50 0 1 1476 224 156 111 0 chr4 116830272 116830317 -38799803 - B1_Mus1 SINE Alu -98 50 1 1 1476 422 186 244 8 chr4 116830321 116830440 -38799680 - B1F SINE Alu 0 149 3 1 1476 2139 45 4 36 chr4 116830622 116830900 -38799220 + L1Md_F2 LINE L1 6314 6582 0 1 1476 1285 34 0 0 chr4 116830910 116831057 -38799063 + B1_Mus2 SINE Alu 1 147 0 1 1476 226 174 87 0 chr4 116833233 116833279 -38796841 + RSINE1 SINE B4 88 137 -28 1 1476 1335 66 21 21 chr4 116833480 116833666 -38796454 + B2_Mm2 SINE B2 2 187 -8 1 1476 362 169 326 33 chr4 116834060 116834152 -38795968 + PB1D9 SINE Alu 2 120 0 1 1476 203 260 0 0 chr4 116834282 116834332 -38795788 - MIRc SINE MIR -118 150 101 1 1476 335 321 190 0 chr4 116835456 116835593 -38794527 + RSINE1 SINE B4 2 164 -1 1 1476 762 215 27 20 chr4 116835631 116835778 -38794342 + B1_Mur2 SINE Alu 2 149 0 1 1476 1441 65 32 0 chr4 116835781 116835966 -38794154 + B2_Mm2 SINE B2 5 195 0 1 1476 734 261 44 11 chr4 116835972 116836154 -38793966 + B3 SINE B2 27 214 -2 1 1476 1431 67 17 0 chr4 116836160 116836340 -38793780 - B2_Mm2 SINE B2 -11 184 2 1 1476 675 153 39 31 chr4 116836381 116836509 -38793611 + B1_Mur3 SINE Alu 2 130 -19 1 1476 238 242 209 0 chr4 116836650 116836741 -38793379 - PB1 SINE Alu -17 110 1 1 1476 1009 122 14 0 chr4 116837137 116837284 -38792836 + B1_Mur4 SINE Alu 2 150 0 1 1476 1344 75 21 16 chr4 116837284 116837473 -38792647 + B2_Mm2 SINE B2 6 195 0 1 1476 283 223 28 42 chr4 116838485 116838567 -38791553 + ID2 SINE ID 6 86 -66 1 1476 257 238 67 56 chr4 116839184 116839273 -38790847 + MIR SINE MIR 68 157 -105 1 1476 912 86 56 35 chr4 116839306 116839450 -38790670 + B1_Mus2 SINE Alu 1 147 0 1 1476 262 244 154 0 chr4 116840104 116840182 -38789938 - BC1_Mm scRNA scRNA -53 99 10 1 1476 355 264 123 14 chr4 116840183 116840329 -38789791 - MER2 DNA MER2_type -66 279 118 1 1476 328 317 8 68 chr4 116840371 116840503 -38789617 - RSINE1 SINE B4 0 165 42 1 1476 978 112 35 0 chr4 116840673 116840816 -38789304 + B1_Mus1 SINE Alu 1 148 0 1 1476 601 93 231 9 chr4 116840837 116840945 -38789175 - B1_Mus1 SINE Alu -13 135 4 1 1476 1180 56 7 0 chr4 116840970 116841114 -38789006 - B1_Mus2 SINE Alu 0 147 3 1 1476 225 355 0 0 chr4 116841379 116841441 -38788679 - PB1D10 SINE Alu -17 100 39 1 1476 1258 48 0 0 chr4 116841446 116841593 -38788527 - B1_Mus1 SINE Alu 0 148 2 1 1476 282 207 69 0 chr4 116841745 116841803 -38788317 + RSINE1 SINE B4 83 144 -21 1 1476 496 214 50 33 chr4 116842046 116842167 -38787953 + B1F SINE Alu 24 146 -3 1 1476 349 306 81 7 chr4 116843051 116843199 -38786921 + RSINE1 SINE B4 5 163 -2 1 1476 1087 130 47 32 chr4 116843219 116843409 -38786711 - B2_Mm2 SINE B2 -1 194 2 1 1476 440 216 92 25 chr4 116843520 116843596 -38786524 + RSINE1 SINE B4 5 82 -83 1 1476 501 84 0 0 chr4 116843596 116843667 -38786453 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1476 440 216 92 25 chr4 116843667 116843709 -38786411 + RSINE1 SINE B4 83 131 -34 1 1476 531 228 36 0 chr4 116843766 116843895 -38786225 + B1_Mur1 SINE Alu 3 135 -14 1 1476 522 172 277 13 chr4 116843905 116844064 -38786056 - B3 SINE B2 -14 202 2 1 1476 219 69 0 0 chr4 116844179 116844208 -38785912 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1476 529 270 15 38 chr4 116845115 116845246 -38784874 - B1_Mur3 SINE Alu -21 128 1 1 1476 645 281 32 19 chr4 116845262 116845418 -38784702 - RSINE1 SINE B4 0 165 8 1 1476 920 171 177 0 chr4 116845589 116845770 -38784350 + B3 SINE B2 2 214 -2 1 1476 879 167 14 0 chr4 116845795 116845939 -38784181 - B1_Mus2 SINE Alu -1 146 1 1 1476 26 50 0 0 chr4 116845945 116845985 -38784135 + AT_rich Low_complexity Low_complexity 1 40 0 1 1476 324 274 53 112 chr4 116846492 116846510 -38783610 + ID_B1 SINE B4 77 219 -5 1 1476 463 254 52 60 chr4 116846510 116846644 -38783476 + B1F SINE Alu 12 144 -5 1 1476 501 276 133 15 chr4 116846644 116846839 -38783281 - ID_B1 SINE B4 -5 219 2 1 1476 306 293 134 25 chr4 116847084 116847190 -38782930 - PB1D7 SINE Alu -12 108 5 1 1476 371 239 0 0 chr4 116847818 116847889 -38782231 + ID4_ SINE ID 2 72 -11 1 1476 2244 107 115 15 chr4 116848075 116848474 -38781646 + RMER6A LTR ERVK 1 439 -317 1 1476 456 216 0 0 chr4 116848646 116848748 -38781372 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1476 895 173 214 0 chr4 116848752 116848925 -38781195 - B3 SINE B2 -6 210 1 1 1476 326 274 53 112 chr4 116848971 116849123 -38780997 + B4A SINE B4 77 219 -73 1 1476 924 117 0 35 chr4 116848992 116849134 -38780986 + B1_Mus1 SINE Alu 11 147 -1 1 1476 500 261 65 36 chr4 116849154 116849293 -38780827 + B1F SINE Alu 1 143 -6 1 1476 190 250 11 121 chr4 116849317 116849408 -38780712 + L2 LINE L2 2869 2949 -470 1 1476 232 243 0 0 chr4 116849424 116849494 -38780626 + A-rich Low_complexity Low_complexity 1 70 0 1 1476 347 192 39 0 chr4 116849511 116849589 -38780531 + RSINE1 SINE B4 31 111 -54 1 1476 531 0 0 0 chr4 116849713 116849772 -38780348 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1476 258 248 186 31 chr4 116849776 116849905 -38780215 - RSINE1 SINE B4 -14 151 3 1 1476 522 197 188 0 chr4 116849955 116850072 -38780048 - B1_Mur2 SINE Alu -8 141 3 1 1476 313 315 99 29 chr4 116850076 116850179 -38779941 - PB1D10 SINE Alu -7 110 2 1 1476 218 284 27 13 chr4 116851490 116851565 -38778555 + ID4_ SINE ID 2 77 -6 1 1476 1624 47 0 0 chr4 116851640 116851831 -38778289 + B2_Mm1a SINE B2 3 193 0 1 1476 1113 69 13 27 chr4 116851846 116851995 -38778125 + B1_Mus2 SINE Alu 1 147 0 1 1476 296 86 57 0 chr4 116852004 116852074 -38778046 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1476 978 149 12 29 chr4 116852080 116852253 -38777867 + B2_Mm2 SINE B2 1 170 -25 1 1476 593 222 0 25 chr4 116852259 116852379 -38777741 - PB1D9 SINE Alu 0 120 4 1 1476 227 254 90 0 chr4 116852487 116852554 -38777566 - MIRb SINE MIR -76 192 120 1 1476 215 31 0 30 chr4 116853450 116853483 -38776637 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1476 1298 20 0 0 chr4 116853492 116853638 -38776482 - B1_Mus2 SINE Alu -1 146 1 1 1476 1240 41 7 0 chr4 116853641 116853787 -38776333 - B1_Mm SINE Alu 0 147 1 1 1476 787 145 21 14 chr4 116853827 116853967 -38776153 + B1_Mur4 SINE Alu 1 141 -9 1 1476 26 0 0 0 chr4 116854010 116854036 -38776084 + AT_rich Low_complexity Low_complexity 1 26 0 1 1476 721 169 46 60 chr4 116854061 116854212 -38775908 + B1_Mur3 SINE Alu 1 149 0 1 1476 860 53 129 8 chr4 116854511 116854643 -38775477 + B1_Mus1 SINE Alu 1 148 0 1 1476 225 0 0 0 chr4 116854651 116854676 -38775444 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1476 357 98 0 47 chr4 116854676 116854740 -38775380 + PB1D9 SINE Alu 1 61 -59 1 1476 201 39 0 0 chr4 116855331 116855357 -38774763 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1476 997 45 114 0 chr4 116855371 116855503 -38774617 - B1_Mus2 SINE Alu 0 147 1 1 1476 661 212 95 0 chr4 116855819 116855956 -38774164 + B1_Mur4 SINE Alu 1 150 0 1 1476 388 312 88 0 chr4 116855975 116856100 -38774020 + B1F SINE Alu 1 136 -13 1 1476 219 36 0 0 chr4 116856100 116856128 -38773992 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1476 488 189 152 1 chr4 116856414 116856526 -38773594 + RSINE1 SINE B4 37 165 0 1 1476 1240 35 7 0 chr4 116856575 116856720 -38773400 + B1_Mm SINE Alu 2 147 0 1 1476 962 101 209 0 chr4 116856760 116856918 -38773202 + B2_Mm1a SINE B2 2 192 -1 1 1476 228 195 0 0 chr4 116856955 116856996 -38773124 + RSINE1 SINE B4 11 51 -114 1 1476 279 140 35 0 chr4 116857172 116857229 -38772891 - B1_Mur2 SINE Alu 0 149 91 1 1476 955 103 63 0 chr4 116857215 116857376 -38772744 + B2_Mm2 SINE B2 16 188 -7 1 1476 272 169 34 0 chr4 116857418 116857477 -38772643 - B3 SINE B2 -155 61 1 1 1476 634 282 34 0 chr4 116857495 116857644 -38772476 - RSINE1 SINE B4 0 165 12 1 1476 195 129 0 0 chr4 116857647 116857678 -38772442 + (CCCCCT)n Simple_repeat Simple_repeat 6 36 0 1 1476 830 104 32 0 chr4 116857681 116857806 -38772314 - B1_Mus1 SINE Alu -19 129 1 1 1476 718 241 74 11 chr4 116857832 116858021 -38772099 + B3 SINE B2 1 201 -15 1 1476 1254 209 183 26 chr4 116858022 116858186 -38771934 - RMER10B LTR ERVL 0 398 203 1 1476 213 39 0 0 chr4 116858186 116858212 -38771908 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1476 1254 209 183 26 chr4 116858212 116858391 -38771729 - RMER10B LTR ERVL -196 202 1 1 1476 440 133 97 32 chr4 116858454 116858547 -38771573 + B1_Mur1 SINE Alu 43 141 -8 1 1476 276 242 0 112 chr4 116858547 116858561 -38771559 + ID_B1 SINE B4 130 224 0 1 1476 407 186 10 0 chr4 116858567 116858664 -38771456 + GA-rich Low_complexity Low_complexity 1 98 0 1 1476 1331 183 134 35 chr4 116858676 116859049 -38771071 + RMER17C LTR ERVK 1 410 0 1 1476 1021 114 7 7 chr4 116859283 116859433 -38770687 - B1_Mur4 SINE Alu 0 150 1 1 1476 985 81 13 7 chr4 116859450 116859599 -38770521 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 1 1476 573 239 7 69 chr4 116859624 116859768 -38770352 - B1_Mur2 SINE Alu -13 136 2 1 1476 3299 52 28 9 chr4 116859792 116860215 -38769905 + RLTR10C LTR ERVK 1 431 -5 1 1476 222 37 0 0 chr4 116860215 116860242 -38769878 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1476 774 200 64 7 chr4 116860280 116860421 -38769699 + B1_Mur3 SINE Alu 1 149 0 1 1476 1650 27 0 0 chr4 116860459 116860645 -38769475 + B2_Mm1a SINE B2 2 187 -6 1 1476 205 191 0 0 chr4 116860647 116860689 -38769431 + A-rich Low_complexity Low_complexity 1 42 0 1 1476 354 236 21 41 chr4 116860690 116860787 -38769333 - B1F SINE Alu -30 119 25 1 1476 264 100 0 0 chr4 116860953 116860993 -38769127 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1476 626 223 23 0 chr4 116861231 116861361 -38768759 + B1_Mur2 SINE Alu 2 134 -15 1 1476 180 0 0 0 chr4 116861693 116861713 -38768407 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1476 288 0 0 0 chr4 116861723 116861755 -38768365 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1476 25 0 0 0 chr4 116861878 116861903 -38768217 + AT_rich Low_complexity Low_complexity 1 25 0 1 1476 422 349 0 0 chr4 116861913 116862039 -38768081 + ID_B1 SINE B4 81 206 -18 1 1476 241 317 88 16 chr4 116862040 116862165 -38767955 + B1F SINE Alu 16 149 0 1 1476 189 147 0 0 chr4 116862192 116862226 -38767894 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1476 881 78 0 8 chr4 116862546 116862663 -38767457 + U5 snRNA snRNA 1 116 0 1 1476 237 139 0 44 chr4 116862909 116862954 -38767166 - B1F SINE Alu -5 144 102 1 1476 403 141 14 40 chr4 116863098 116863172 -38766948 + Lx6 LINE L1 6655 6726 -734 1 1476 1109 50 42 14 chr4 116863255 116863398 -38766722 - B1_Mm SINE Alu 0 147 1 1 1476 283 269 181 11 chr4 116863519 116863613 -38766507 + PB1D10 SINE Alu 6 115 -2 1 1476 426 291 85 16 chr4 116863696 116863825 -38766295 + B4A SINE B4 29 166 -126 1 1476 227 148 74 0 chr4 116864081 116864135 -38765985 + T-rich Low_complexity Low_complexity 3 60 0 1 1476 428 310 23 0 chr4 116864164 116864293 -38765827 - B1F1 SINE Alu -17 132 1 1 1476 692 207 7 33 chr4 116864313 116864463 -38765657 - B1_Mur3 SINE Alu -1 148 3 1 1476 363 231 82 55 chr4 116864474 116864584 -38765536 - PB1D7 SINE Alu -7 113 1 1 1476 3046 17 42 3 chr4 116864729 116865082 -38765038 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1476 56707 22 17 2 chr4 116865082 116871463 -38758657 + IAPEz-int LTR ERVK 8 6481 0 1 1476 3046 17 42 3 chr4 116871463 116871816 -38758304 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1476 401 106 30 0 chr4 116871929 116871995 -38758125 - B1_Mur3 SINE Alu 0 149 82 1 1476 982 210 19 14 chr4 116872013 116872226 -38757894 - B3 SINE B2 0 216 3 1 1476 298 147 46 96 chr4 116872874 116872986 -38757134 + B1_Mm SINE Alu 64 147 0 1 1476 464 128 326 5 chr4 116873020 116873157 -38756963 + MTC LTR MaLR 1 210 -211 1 1476 22 35 0 0 chr4 116873176 116873205 -38756915 + AT_rich Low_complexity Low_complexity 1 29 0 1 1476 1714 16 0 0 chr4 116873205 116873395 -38756725 - B2_Mm1a SINE B2 -2 191 2 1 1476 1412 47 12 0 chr4 116873397 116873569 -38756551 - B2_Mm1a SINE B2 -18 175 2 1 1476 1318 118 16 0 chr4 116873573 116873760 -38756360 - B2_Mm2 SINE B2 -5 190 1 1 1476 1027 25 0 0 chr4 116873969 116874091 -38756029 + B1_Mus1 SINE Alu 27 148 0 1 1476 922 170 228 0 chr4 116874227 116874398 -38755722 - B3 SINE B2 -6 210 1 1 1476 507 252 138 0 chr4 116874435 116874558 -38755562 - B1_Mur4 SINE Alu -5 145 6 1 1476 605 268 109 57 chr4 116874559 116874769 -38755351 - Lx8 LINE L1 -100 7373 7153 1 1476 855 78 0 8 chr4 116875132 116875249 -38754871 + U5 snRNA snRNA 1 116 0 1 1476 697 65 299 0 chr4 116875508 116875615 -38754505 + B1_Mus1 SINE Alu 1 139 -9 1 1476 550 173 87 80 chr4 116875689 116875827 -38754293 + B1_Mur4 SINE Alu 11 149 -1 1 1476 1470 43 21 11 chr4 116875830 116876019 -38754101 + B2_Mm1a SINE B2 2 192 -1 1 1476 828 162 42 7 chr4 116876078 116876221 -38753899 - B1_Mur3 SINE Alu 0 149 2 1 1476 614 194 52 71 chr4 116876303 116876411 -38753709 + B3A SINE B2 45 156 -42 1 1476 486 0 0 0 chr4 116876411 116876465 -38753655 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1476 614 194 52 71 chr4 116876465 116876511 -38753609 + B3A SINE B2 157 196 -2 1 1476 391 297 75 38 chr4 116876705 116876838 -38753282 + B1F1 SINE Alu 1 138 -11 1 1476 216 0 0 0 chr4 116876838 116876862 -38753258 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1476 709 176 90 13 chr4 116877018 116877173 -38752947 + RMER5 LTR ERV1 150 316 -218 1 1476 340 186 0 210 chr4 116877240 116877322 -38752798 + ORR1B1 LTR MaLR 52 115 -279 1 1476 1206 62 0 0 chr4 116877322 116877468 -38752652 - B1_Mus2 SINE Alu 0 147 2 1 1476 340 186 0 210 chr4 116877468 116877528 -38752592 + ORR1B1 LTR MaLR 116 164 -230 1 1476 1326 155 39 29 chr4 116877556 116877838 -38752282 + ORR1B1 LTR MaLR 88 394 0 1 1476 678 204 22 29 chr4 116877843 116877979 -38752141 - B1_Mus2 SINE Alu 0 147 13 1 1476 628 180 41 8 chr4 116877990 116878113 -38752007 + RMER5 LTR ERV1 399 525 -9 1 1476 667 208 16 0 chr4 116878165 116878290 -38751830 + B3 SINE B2 80 206 -10 1 1476 856 149 98 18 chr4 116878300 116878464 -38751656 - B2_Mm2 SINE B2 -18 177 1 1 1476 258 56 0 0 chr4 116878500 116878536 -38751584 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1476 1277 27 0 0 chr4 116878536 116878683 -38751437 - B1_Mm SINE Alu 0 147 1 1 1476 273 311 37 19 chr4 116878731 116878839 -38751281 - B3 SINE B2 -14 202 93 1 1476 2391 93 0 0 chr4 116878861 116879182 -38750938 - ORR1A4 LTR MaLR -8 321 1 1 1476 998 61 0 165 chr4 116879218 116879394 -38750726 - B1_Mus1 SINE Alu 0 148 2 1 1476 1261 34 0 0 chr4 116879666 116879813 -38750307 - B1_Mus2 SINE Alu 0 147 1 1 1476 237 132 0 0 chr4 116879902 116879940 -38750180 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1476 739 206 30 0 chr4 116880413 116880544 -38749576 + B1_Mus1 SINE Alu 2 136 -12 1 1476 198 0 0 0 chr4 116880547 116880569 -38749551 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 1 1476 1189 61 0 0 chr4 116880691 116880838 -38749282 + B1_Mus1 SINE Alu 1 147 -1 1 1476 477 0 0 0 chr4 116880873 116880926 -38749194 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1476 393 22 0 0 chr4 116880927 116880973 -38749147 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1476 468 217 54 0 chr4 116880973 116881065 -38749055 - RSINE1 SINE B4 -44 121 25 1 1476 260 305 46 59 chr4 116881097 116881121 -38748999 - PB1D7 SINE Alu -2 125 90 1 1476 264 170 0 78 chr4 116881121 116881172 -38748948 - 4.5SRNA scRNA scRNA -5 89 43 1 1476 260 305 46 59 chr4 116881172 116881228 -38748892 - PB1D7 SINE Alu -2 89 2 1 1476 263 163 0 0 chr4 116881237 116881280 -38748840 - ID_B1 SINE B4 -1 223 181 1 1476 225 246 82 0 chr4 116881238 116881297 -38748823 - PB1D10 SINE Alu 0 117 54 1 1476 1450 133 74 12 chr4 116881297 116881540 -38748580 + RLTR28 LTR ERVL 1 258 -266 1 1476 850 174 33 22 chr4 116881540 116881722 -38748398 + B2_Mm2 SINE B2 3 186 -9 1 1476 1101 44 73 0 chr4 116881733 116881870 -38748250 + B1_Mus2 SINE Alu 1 147 0 1 1476 243 125 27 14 chr4 116881872 116881945 -38748175 + A-rich Low_complexity Low_complexity 1 74 0 1 1476 1291 152 34 53 chr4 116881946 116882210 -38747910 + RLTR28 LTR ERVL 245 503 -21 1 1476 498 192 1 48 chr4 116882392 116882512 -38747608 + B1_Mur1 SINE Alu 3 118 -31 1 1476 235 333 144 0 chr4 116882564 116882675 -38747445 + ID_B1 SINE B4 93 219 -5 1 1476 195 69 0 0 chr4 116883005 116883034 -38747086 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1 1476 866 78 0 8 chr4 116883448 116883565 -38746555 + U5 snRNA snRNA 1 116 0 1 1476 7514 65 20 1 chr4 116883616 116884576 -38745544 + L1Md_F2 LINE L1 5605 6582 0 1 1476 543 214 113 7 chr4 116884576 116884593 -38745527 + B4 SINE B4 70 224 -67 1 1476 776 55 30 11 chr4 116884593 116884716 -38745404 + B1_Mus1 SINE Alu 1 119 -1 1 1476 483 275 0 40 chr4 116884832 116884957 -38745163 + PB1D9 SINE Alu 1 120 0 1 1476 258 184 234 13 chr4 116885091 116885168 -38744952 + B1F2 SINE Alu 1 94 -55 1 1476 192 40 0 0 chr4 116885254 116885279 -38744841 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 1 1476 1055 179 87 0 chr4 116885554 116885761 -38744359 + URR1B DNA MER1_type 1 225 0 1 1476 279 163 0 39 chr4 116887193 116887244 -38742876 + PB1D9 SINE Alu 10 58 -62 1 1476 209 319 0 0 chr4 116887247 116887319 -38742801 + GA-rich Low_complexity Low_complexity 3 74 0 1 1476 523 171 0 0 chr4 116887321 116887403 -38742717 + B1_Mur2 SINE Alu 42 123 -26 1 1476 292 306 10 30 chr4 116887403 116887422 -38742698 + ID_B1 SINE B4 123 221 -3 1 1476 539 94 10 0 chr4 116887425 116887521 -38742599 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1476 306 0 0 0 chr4 116887521 116887555 -38742565 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1476 721 162 0 0 chr4 116887609 116887726 -38742394 - B1_Mur2 SINE Alu -1 148 32 1 1476 453 36 0 0 chr4 116887728 116887783 -38742337 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1476 237 213 43 0 chr4 116887784 116887831 -38742289 + B1_Mus2 SINE Alu 1 49 -98 1 1476 277 172 133 33 chr4 116888521 116888581 -38741539 - ID4 SINE ID -13 70 5 1 1476 329 276 0 67 chr4 116888642 116888733 -38741387 + PB1D10 SINE Alu 19 105 -12 1 1476 1215 55 7 0 chr4 116888733 116888879 -38741241 + B1_Mus1 SINE Alu 2 148 0 1 1476 329 276 0 67 chr4 116888879 116888892 -38741228 + PB1D10 SINE Alu 106 116 -1 1 1476 243 0 0 0 chr4 116888946 116888973 -38741147 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1476 497 275 40 47 chr4 116888994 116889143 -38740977 + B1F2 SINE Alu 1 148 -1 1 1476 645 185 30 16 chr4 116889326 116889461 -38740659 - B1F2 SINE Alu -14 135 1 1 1476 268 316 68 75 chr4 116889461 116889495 -38740625 - B4A SINE B4 -200 92 60 1 1476 360 293 23 47 chr4 116890299 116890442 -38739678 + PB1D9 SINE Alu 1 134 -13 1 1476 389 246 75 60 chr4 116890561 116890695 -38739425 + MT2B2 LTR ERVL 123 258 -326 1 1476 492 213 64 102 chr4 116890584 116890601 -38739519 + B4 SINE B4 75 224 -67 1 1476 985 95 7 14 chr4 116890601 116890740 -38739380 + B1_Mus1 SINE Alu 10 147 -1 1 1476 211 136 14 43 chr4 116890844 116890913 -38739207 + T-rich Low_complexity Low_complexity 6 72 0 1 1476 964 155 0 26 chr4 116890913 116891065 -38739055 - B1_Mur1 SINE Alu 0 149 2 1 1476 322 314 29 29 chr4 116891901 116892006 -38738114 - B1F1 SINE Alu -42 107 3 1 1476 490 263 79 14 chr4 116892047 116892186 -38737934 + RSINE1 SINE B4 3 150 -15 1 1476 1214 48 0 0 chr4 116892261 116892408 -38737712 - B1_Mus1 SINE Alu 0 148 2 1 1476 769 307 62 16 chr4 116892410 116892652 -38737468 + B4A SINE B4 26 278 -14 1 1476 414 0 0 0 chr4 116892664 116892710 -38737410 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1476 250 256 0 152 chr4 116892738 116892830 -38737290 + PB1D10 SINE Alu 40 117 0 1 1476 569 233 105 0 chr4 116892877 116893010 -38737110 - B1_Mur2 SINE Alu -2 147 1 1 1476 302 254 15 0 chr4 116893140 116893207 -38736913 - ID_B1 SINE B4 -20 204 137 1 1476 599 179 0 86 chr4 116893212 116893328 -38736792 - PB1D7 SINE Alu -1 119 14 1 1476 2113 119 111 14 chr4 116893364 116893723 -38736397 + ORR1B1 LTR MaLR 1 394 0 1 1476 433 216 49 39 chr4 116893750 116893895 -38736225 - B3A SINE B2 -1 215 1 1 1476 1158 64 0 0 chr4 116894164 116894304 -38735816 - B1_Mus1 SINE Alu -7 141 2 1 1476 420 20 0 0 chr4 116894478 116894527 -38735593 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1476 563 308 7 0 chr4 116894541 116894687 -38735433 - RSINE1 SINE B4 -17 148 2 1 1476 593 259 94 13 chr4 116894812 116894961 -38735159 - RSINE1 SINE B4 0 165 5 1 1476 533 154 34 34 chr4 116894979 116895154 -38734966 + CT-rich Low_complexity Low_complexity 1 175 0 1 1476 457 255 34 60 chr4 116895190 116895307 -38734813 - B1_Mur3 SINE Alu -35 114 1 1 1476 223 216 0 0 chr4 116895345 116895382 -38734738 + PB1D7 SINE Alu 1 37 -83 1 1476 216 0 0 0 chr4 116895393 116895417 -38734703 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1476 411 252 9 36 chr4 116895494 116895605 -38734515 + PB1D10 SINE Alu 1 108 -9 1 1476 279 0 0 0 chr4 116896192 116896223 -38733897 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1476 258 105 0 0 chr4 116896260 116896298 -38733822 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1476 998 162 6 7 chr4 116896301 116896476 -38733644 + B3 SINE B2 5 186 -12 1 1476 350 194 214 48 chr4 116896490 116896593 -38733527 + PB1D9 SINE Alu 1 120 0 1 1476 816 179 50 0 chr4 116896610 116896750 -38733370 + B1_Mus1 SINE Alu 2 148 0 1 1476 354 80 0 0 chr4 116896771 116896821 -38733299 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1476 596 255 27 27 chr4 116896821 116896970 -38733150 - RSINE1 SINE B4 -16 149 1 1 1476 227 125 0 70 chr4 116896972 116897015 -38733105 - B1F SINE Alu -7 142 103 1 1476 679 248 8 0 chr4 116897424 116897557 -38732563 + B3A SINE B2 1 134 -64 1 1476 978 112 0 0 chr4 116897557 116897835 -38732285 + (CA)n Simple_repeat Simple_repeat 1 278 0 1 1476 931 138 30 74 chr4 116897836 116898039 -38732081 - B2_Mm2 SINE B2 0 195 2 1 1476 879 74 16 18 chr4 116898226 116898363 -38731757 - B1_Mur3 SINE Alu 0 149 15 1 1476 338 289 41 117 chr4 116898235 116898380 -38731740 - B4A SINE B4 -72 220 87 1 1476 295 285 92 46 chr4 116898318 116898491 -38731629 + MLT1G1 LTR MaLR 140 320 -275 1 1476 302 284 27 82 chr4 116898540 116898724 -38731396 + MER96B DNA hAT 33 206 -211 1 1476 457 243 36 0 chr4 116899024 116899135 -38730985 + PB1D10 SINE Alu 2 116 -1 1 1476 1165 74 0 0 chr4 116899141 116899289 -38730831 + B1_Mus1 SINE Alu 1 148 0 1 1476 255 133 0 0 chr4 116899289 116899334 -38730786 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1476 198 136 0 0 chr4 116899521 116899565 -38730555 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1476 1712 219 66 33 chr4 116899621 116900078 -38730042 + RLTR11A2 LTR ERVK 4 475 -52 1 1476 329 127 0 18 chr4 116900035 116900091 -38730029 - B2_Mm2 SINE B2 -94 101 47 1 1476 1403 62 11 6 chr4 116900142 116900319 -38729801 - B2_Mm1t SINE B2 -14 179 2 1 1476 771 139 146 0 chr4 116900319 116900456 -38729664 + RLTR11A2 LTR ERVK 368 524 -3 1 1476 431 275 0 29 chr4 116900456 116900561 -38729559 - PB1D10 SINE Alu -15 102 1 1 1476 302 0 26 0 chr4 116902753 116902791 -38727329 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1476 762 175 73 0 chr4 116902849 116902986 -38727134 - B1_Mur2 SINE Alu 0 149 3 1 1476 848 191 133 0 chr4 116903058 116903231 -38726889 - B3 SINE B2 -19 197 2 1 1476 468 195 140 59 chr4 116903252 116903388 -38726732 - B1_Mur2 SINE Alu 0 149 3 1 1476 737 249 92 0 chr4 116903405 116903578 -38726542 - B3 SINE B2 -27 189 1 1 1476 225 281 7 56 chr4 116903682 116903713 -38726407 + ORR1D2-int LTR MaLR 618 641 -868 1 1476 805 135 0 45 chr4 116903713 116903845 -38726275 + B1_Mus2 SINE Alu 1 126 -21 1 1476 510 17 0 0 chr4 116903848 116903907 -38726213 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1476 570 298 40 0 chr4 116903907 116904058 -38726062 + ID_B1 SINE B4 12 168 -56 1 1476 776 280 50 108 chr4 116904058 116904399 -38725721 + ORR1D2 LTR MaLR 1 321 -49 1 1476 41 21 0 0 chr4 116904668 116904716 -38725404 + AT_rich Low_complexity Low_complexity 1 48 0 1 1476 366 80 0 0 chr4 116904738 116904788 -38725332 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1476 261 278 59 22 chr4 116904788 116904874 -38725246 - PB1D10 SINE Alu -226 88 1 1 1476 406 244 145 8 chr4 116904941 116905065 -38725055 - B1F SINE Alu 0 149 9 1 1476 320 293 98 21 chr4 116905088 116905231 -38724889 - HAL1-3A_ME LINE L1 -420 2438 2285 1 1476 256 325 48 83 chr4 116905464 116905632 -38724488 + MLT1K LTR MaLR 370 531 -64 1 1476 24 53 0 0 chr4 116905643 116905681 -38724439 + AT_rich Low_complexity Low_complexity 1 38 0 1 1476 492 171 0 0 chr4 116906108 116906219 -38723901 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1476 997 129 7 20 chr4 116906435 116906585 -38723535 + B1_Mur3 SINE Alu 1 148 -1 1 1476 234 239 0 32 chr4 116907346 116907441 -38722679 + CT-rich Low_complexity Low_complexity 5 96 0 1 1476 544 239 18 0 chr4 116907451 116907564 -38722556 - PB1D10 SINE Alu -2 115 1 1 1476 942 128 0 68 chr4 116908242 116908418 -38721702 - B2_Mm2 SINE B2 -10 185 22 1 1476 186 338 150 27 chr4 116908500 116908986 -38721134 - L2 LINE L2 -1011 2408 1863 1 1476 510 219 108 47 chr4 116909036 116909165 -38720955 + ID_B1 SINE B4 84 220 -4 1 1476 1140 198 14 19 chr4 116909175 116909360 -38720760 + B3 SINE B2 1 187 -29 1 1476 401 0 20 0 chr4 116909360 116909409 -38720711 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1476 1140 198 14 19 chr4 116909409 116909439 -38720681 + B3 SINE B2 188 215 -1 1 1476 2069 83 54 9 chr4 116909577 116909655 -38720465 + ORR1A4 LTR MaLR 1 78 -251 1 1476 1004 11 0 100 chr4 116909655 116909855 -38720265 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1476 2069 83 54 9 chr4 116909855 116910091 -38720029 + ORR1A4 LTR MaLR 79 329 0 1 1476 236 319 14 0 chr4 116910709 116910778 -38719342 + ID4 SINE ID 6 75 -8 1 1476 255 333 0 13 chr4 116910861 116910940 -38719180 + ID_B1 SINE B4 89 166 -58 1 1476 332 261 31 77 chr4 116910929 116911041 -38719079 - B1_Mur1 SINE Alu -31 118 15 1 1476 708 45 0 0 chr4 116911060 116911148 -38718972 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 1476 463 193 12 35 chr4 116911148 116911234 -38718886 - PB1D10 SINE Alu -12 105 22 1 1476 207 175 0 0 chr4 116911263 116911303 -38718817 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1476 584 239 31 182 chr4 116911309 116911405 -38718715 - B4A SINE B4 -2 290 100 1 1476 863 147 0 0 chr4 116911405 116911534 -38718586 - B1_Mur2 SINE Alu -6 143 15 1 1476 1161 147 11 0 chr4 116911535 116911712 -38718408 + B2_Mm1t SINE B2 1 179 -14 1 1476 311 109 345 26 chr4 116911759 116911872 -38718248 + B2_Mm2 SINE B2 47 195 0 1 1476 312 274 89 52 chr4 116911909 116912044 -38718076 - B1_Mur1 SINE Alu -7 142 3 1 1476 1431 68 10 15 chr4 116913089 116913284 -38716836 + B2_Mm2 SINE B2 2 195 0 1 1476 767 181 65 0 chr4 116913295 116913433 -38716687 + B1_Mur4 SINE Alu 2 148 -2 1 1476 292 210 165 29 chr4 116913622 116913725 -38716395 - PB1D10 SINE Alu 0 117 1 1 1476 1199 70 92 6 chr4 116913924 116914097 -38716023 - B2_Mm2 SINE B2 -7 188 1 1 1476 420 242 54 21 chr4 116914204 116914297 -38715823 + B1_Mur1 SINE Alu 2 97 -52 1 1476 397 265 44 7 chr4 116914617 116914754 -38715366 + MLT1B LTR MaLR 199 340 -50 1 1476 705 205 29 19 chr4 116914771 116914932 -38715188 - B3 SINE B2 -56 160 1 1 1476 365 146 0 0 chr4 116914937 116914992 -38715128 + MLT1B LTR MaLR 334 388 -2 1 1476 425 278 99 18 chr4 116914993 116915275 -38714845 - HAL1 LINE L1 -189 2318 2014 1 1476 549 274 26 46 chr4 116915826 116915979 -38714141 - RSINE1 SINE B4 -8 157 8 1 184 895 258 9 5 chr4 116916020 116916234 -38713886 - B3 SINE B2 0 216 2 1 1477 301 286 162 7 chr4 116916420 116916568 -38713552 + MIR SINE MIR 3 173 -89 1 1477 515 250 85 8 chr4 116916618 116916747 -38713373 + ID_B1 SINE B4 2 140 -84 1 1477 786 148 17 17 chr4 116916765 116916886 -38713234 + C-rich Low_complexity Low_complexity 61 180 0 1 1477 1092 90 0 33 chr4 116916886 116917069 -38713051 + (TCCCC)n Simple_repeat Simple_repeat 3 179 0 1 1477 786 148 17 17 chr4 116917069 116917126 -38712994 + C-rich Low_complexity Low_complexity 2 60 0 1 1477 294 254 37 45 chr4 116917191 116917218 -38712902 - ID_B1 SINE B4 -182 110 8 1 1477 357 243 27 0 chr4 116917218 116917292 -38712828 - ID4_ SINE ID 0 83 8 1 1477 330 185 31 0 chr4 116917279 116917344 -38712776 - ID_B1 SINE B4 -11 213 147 1 1477 869 156 17 16 chr4 116917415 116917594 -38712526 + B3 SINE B2 2 181 -14 1 1477 848 47 0 0 chr4 116917609 116917715 -38712405 - B1_Mm SINE Alu 0 147 42 1 1477 326 250 27 55 chr4 116917631 116917644 -38712476 - RLTR25B LTR ERVK -507 521 481 1 1477 349 176 38 63 chr4 116917644 116917723 -38712397 - MT2B LTR ERVL -337 264 188 1 1477 326 250 27 55 chr4 116917723 116917741 -38712379 - RLTR25B LTR ERVK -507 480 415 1 1477 184 305 211 0 chr4 116917955 116918050 -38712070 + L2b LINE L2 3247 3361 -14 1 1477 396 277 15 44 chr4 116918990 116919126 -38710994 + B1F1 SINE Alu 18 149 0 1 1477 964 128 0 14 chr4 116919421 116919564 -38710556 + B1_Mur4 SINE Alu 10 150 0 1 1477 547 105 0 0 chr4 116919586 116919662 -38710458 - ORR1C1 LTR MaLR -308 76 1 1 1477 4193 212 28 32 chr4 116919662 116920338 -38709782 - ORR1C1-int LTR MaLR 0 1370 689 1 1477 4992 152 75 4 chr4 116920338 116921180 -38708940 - RMER19B LTR ERVK 0 902 1 1 1477 4193 212 28 32 chr4 116921180 116921447 -38708673 - ORR1C1-int LTR MaLR -682 688 431 1 1477 1256 41 0 0 chr4 116921470 116921617 -38708503 + B1_Mus2 SINE Alu 1 147 0 1 1477 366 98 0 0 chr4 116921634 116921695 -38708425 - B2_Mm1a SINE B2 -6 187 127 1 1477 1135 61 0 7 chr4 116921723 116921871 -38708249 - B2_Mm2 SINE B2 -47 148 2 1 1477 1912 199 93 29 chr4 116921872 116922292 -38707828 - ORR1C1-int LTR MaLR -1062 447 1 1 1477 1184 145 16 0 chr4 116922292 116922478 -38707642 - ORR1C1 LTR MaLR 0 378 190 1 1477 21 0 0 0 chr4 116922519 116922540 -38707580 + AT_rich Low_complexity Low_complexity 1 21 0 1 1477 1476 60 16 0 chr4 116922546 116922729 -38707391 + B2_Mm2 SINE B2 1 186 -9 1 1477 400 327 19 44 chr4 116922762 116922922 -38707198 - RSINE1 SINE B4 -2 163 8 1 1477 510 260 59 31 chr4 116922941 116923082 -38707038 - B4A SINE B4 -68 224 91 1 1477 1335 113 0 5 chr4 116923082 116923269 -38706851 - B2_Mm2 SINE B2 -9 186 1 1 1477 444 266 122 131 chr4 116923269 116923348 -38706772 - B4 SINE B4 -200 92 5 1 1477 467 233 162 8 chr4 116923536 116923653 -38706467 - ID_B1 SINE B4 -2 222 88 1 1477 204 333 159 0 chr4 116923655 116923793 -38706327 + L2 LINE L2 1921 2080 -1339 1 1477 627 156 155 8 chr4 116923892 116924021 -38706099 - B1_Mur3 SINE Alu -1 148 1 1 1477 21 71 0 0 chr4 116924579 116924621 -38705499 + GC_rich Low_complexity Low_complexity 1 42 0 1 1477 199 332 167 24 chr4 116925127 116925337 -38704783 + MIRb SINE MIR 18 257 -11 1 1477 270 0 0 0 chr4 116925349 116925379 -38704741 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1477 1176 81 0 0 chr4 116925628 116925776 -38704344 + B1_Mus1 SINE Alu 1 148 0 1 1477 360 169 30 15 chr4 116926136 116926202 -38703918 - ID4 SINE ID -15 68 2 1 1477 421 361 13 0 chr4 116926232 116926387 -38703733 - RSINE1 SINE B4 -6 159 3 1 1477 272 320 61 10 chr4 116926405 116926503 -38703617 - B1F1 SINE Alu -30 119 17 1 1477 201 74 0 0 chr4 116926861 116926888 -38703232 + (CCCTAA)n Simple_repeat Simple_repeat 1 27 0 1 1477 328 269 97 0 chr4 116927601 116927694 -38702426 + PB1D10 SINE Alu 11 112 -5 1 1477 252 0 0 0 chr4 116927694 116927722 -38702398 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 1 1477 930 170 14 0 chr4 116927843 116927990 -38702130 + B1_Mur3 SINE Alu 1 149 0 1 1477 331 233 88 11 chr4 116928009 116928100 -38702020 - U6 snRNA snRNA -3 104 7 1 1477 1160 73 0 20 chr4 116928174 116928327 -38701793 + B1_Mur4 SINE Alu 1 150 0 1 1477 248 24 0 109 chr4 116928350 116928396 -38701724 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1477 200 306 64 9 chr4 116928519 116928628 -38701492 - MIRb SINE MIR -35 233 119 1 1477 379 275 98 27 chr4 116928770 116928994 -38701126 + L1ME4a LINE L1 5694 5933 -191 1 1477 197 255 104 41 chr4 116929106 116929200 -38700920 - MIRc SINE MIR -114 154 62 1 1477 302 228 237 0 chr4 116929890 116930004 -38700116 + ID_B1 SINE B4 82 222 -2 1 1477 1224 247 63 16 chr4 116930146 116930619 -38699501 - L1MB7 LINE L1 -25 6159 5599 1 1477 338 314 23 68 chr4 116930620 116930645 -38699475 - B1F2 SINE Alu 0 149 126 1 1477 2508 127 47 15 chr4 116930645 116931052 -38699068 - MTC LTR MaLR 0 421 2 1 1477 338 314 23 68 chr4 116931052 116931159 -38698961 - B1F2 SINE Alu -24 125 23 1 1477 422 321 54 14 chr4 116931159 116931380 -38698740 - L1MB7 LINE L1 -571 5607 5378 1 1477 488 248 83 89 chr4 116931517 116931685 -38698435 + B4A SINE B4 108 274 -18 1 1477 274 352 36 57 chr4 116931912 116932066 -38698054 + RMER17D2 LTR ERVK 359 600 -209 1 1477 761 259 11 33 chr4 116932066 116932159 -38697961 + B3 SINE B2 1 91 -125 1 1477 4317 36 4 2 chr4 116932159 116932661 -38697459 - RLTR1C LTR ERV1 0 503 1 1 1477 761 259 11 33 chr4 116932661 116932747 -38697373 + B3 SINE B2 92 176 -40 1 1477 1105 176 72 0 chr4 116932880 116933073 -38697047 - B3 SINE B2 -8 208 2 1 1477 367 238 0 92 chr4 116933091 116933114 -38697006 - B1F2 SINE Alu -1 148 111 1 1477 400 191 3 6 chr4 116933114 116933199 -38696921 - B3 SINE B2 -111 84 1 1 1477 367 238 0 92 chr4 116933199 116933262 -38696858 - B1F2 SINE Alu -1 110 2 1 1477 271 0 29 0 chr4 116933689 116933723 -38696397 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1 1477 884 177 6 0 chr4 116933723 116933898 -38696222 + CT-rich Low_complexity Low_complexity 3 178 0 1 1477 1307 72 49 16 chr4 116933915 116934098 -38696022 + B2_Mm2 SINE B2 2 190 -5 1 1477 312 257 13 13 chr4 116934138 116934213 -38695907 + ID4 SINE ID 4 78 -5 1 1477 704 287 0 50 chr4 116935532 116935752 -38694368 - ID_B1 SINE B4 -14 210 2 1 1477 377 340 56 19 chr4 116935810 116935972 -38694148 - MER58B DNA MER1_type 0 341 174 1 1477 468 290 164 101 chr4 116935965 116936069 -38694051 - ID_B1 SINE B4 -4 220 88 1 1477 4270 25 0 0 chr4 116936069 116936548 -38693572 - LTRIS_Mm LTR ERV1 0 482 4 1 1477 468 290 164 101 chr4 116936548 116936586 -38693534 - ID SINE ID -137 87 58 1 1477 216 0 0 0 chr4 116936586 116936610 -38693510 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1477 1104 73 0 0 chr4 116936610 116936746 -38693374 - B1_Mus2 SINE Alu -10 137 2 1 1477 468 290 164 101 chr4 116936746 116936808 -38693312 - ID SINE ID -167 57 2 1 1477 189 171 0 0 chr4 116936829 116936864 -38693256 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1477 215 311 16 16 chr4 116936899 116936961 -38693159 - ID4_ SINE ID -17 66 5 1 1477 866 278 44 61 chr4 116937138 116937433 -38692687 + B4A SINE B4 1 290 -2 1 1477 295 265 32 43 chr4 116937436 116937789 -38692331 + (CA)n Simple_repeat Simple_repeat 1 348 0 1 1477 243 250 42 36 chr4 116937737 116937903 -38692217 + (CATA)n Simple_repeat Simple_repeat 1 167 0 1 1477 603 299 25 13 chr4 116937975 116938134 -38691986 + RSINE1 SINE B4 3 163 -2 1 1477 242 267 87 102 chr4 116938134 116938171 -38691949 + B2_Mm2 SINE B2 2 194 -1 1 1477 505 297 85 16 chr4 116939452 116939640 -38690480 - MIRb SINE MIR -35 233 33 1 1477 296 48 24 0 chr4 116941324 116941366 -38688754 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1477 912 223 75 134 chr4 116941412 116941718 -38688402 + B4 SINE B4 1 288 -4 1 1477 783 184 13 26 chr4 116941931 116942082 -38688038 - B1_Mur3 SINE Alu 0 149 1 1 1477 488 239 88 3 chr4 116942163 116942291 -38687829 - ID_B1 SINE B4 -20 204 71 1 1477 919 154 0 45 chr4 116946250 116946406 -38683714 + B1_Mur4 SINE Alu 2 150 0 1 1477 341 215 79 54 chr4 116946459 116946572 -38683548 + B1_Mur2 SINE Alu 3 148 -1 1 1477 367 157 0 103 chr4 116946614 116946692 -38683428 + B1_Mus2 SINE Alu 78 147 0 1 1477 701 184 40 13 chr4 116946704 116946853 -38683267 - B3 SINE B2 -53 163 11 1 1477 244 293 107 0 chr4 116947825 116947900 -38682220 - B1F SINE Alu -1 148 66 1 1477 781 35 17 1 chr4 116948162 116948269 -38681851 + B1_Mus2 SINE Alu 33 147 0 1 1477 424 255 20 0 chr4 116954584 116954682 -38675438 - B1_Mur1 SINE Alu -25 124 25 1 1477 554 207 32 24 chr4 116955364 116955488 -38674632 + B1_Mur1 SINE Alu 25 149 0 1 1477 182 288 36 36 chr4 116957588 116957671 -38672449 + L3 LINE CR1 4315 4397 -92 1 1477 347 205 101 11 chr4 116960261 116960359 -38669761 + B1F SINE Alu 1 106 -44 1 1477 260 309 72 9 chr4 116960668 116960779 -38669341 + MIRb SINE MIR 29 146 -122 1 1477 21 36 0 0 chr4 116961886 116961914 -38668206 + GC_rich Low_complexity Low_complexity 1 28 0 1 1477 212 29 86 0 chr4 116962092 116962127 -38667993 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 1 1477 180 0 0 0 chr4 116963225 116963245 -38666875 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1477 333 240 0 51 chr4 116963859 116963938 -38666182 - BC1_Mm scRNA scRNA -64 88 14 1 1477 192 315 0 0 chr4 116964499 116964553 -38665567 - L2c LINE L2 -58 3329 3276 1 1477 546 91 0 0 chr4 116964621 116964698 -38665422 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1477 258 302 50 25 chr4 116964703 116964822 -38665298 + MLT1H LTR MaLR 114 235 -314 1 1477 227 214 123 18 chr4 116964857 116964914 -38665206 + ID SINE ID 8 70 -154 1 1477 634 191 29 157 chr4 116965067 116965170 -38664950 + L1_Rod LINE L1 5598 5705 -142 1 1477 1211 178 14 18 chr4 116965170 116965387 -38664733 + B3 SINE B2 1 216 0 1 1477 634 191 29 157 chr4 116965387 116965434 -38664686 + L1_Rod LINE L1 5706 5722 -125 1 1477 775 273 79 50 chr4 116965434 116965503 -38664617 - B4A SINE B4 -5 287 229 1 1477 1320 52 98 0 chr4 116965503 116965677 -38664443 - B2_Mm2 SINE B2 -2 193 3 1 1477 775 273 79 50 chr4 116965677 116965885 -38664235 - B4A SINE B4 -64 228 2 1 1477 634 191 29 157 chr4 116965885 116965975 -38664145 + L1_Rod LINE L1 5723 5808 -39 1 1477 523 171 16 64 chr4 116966033 116966158 -38663962 - B3 SINE B2 -2 214 96 1 1477 303 333 0 0 chr4 116966750 116966840 -38663280 + PB1D7 SINE Alu 25 114 -6 1 1477 398 228 0 0 chr4 116966884 116966963 -38663157 + B1F2 SINE Alu 16 94 -55 1 1477 636 48 0 0 chr4 116967436 116967520 -38662600 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1477 795 170 162 81 chr4 116967563 116967761 -38662359 - B3 SINE B2 -2 214 1 1 1477 526 222 17 8 chr4 116969051 116969169 -38660951 - PB1D7 SINE Alu -1 119 1 1 1477 357 24 0 0 chr4 116971681 116971723 -38658397 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1477 456 77 0 0 chr4 116971741 116971806 -38658314 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1477 212 184 20 39 chr4 116973344 116973395 -38656725 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 1 1477 665 182 65 33 chr4 116973455 116973608 -38656512 + MER20 DNA MER1_type 62 219 0 1 1477 234 0 0 0 chr4 116975923 116975949 -38654171 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1477 23 0 0 0 chr4 116976919 116976942 -38653178 + GC_rich Low_complexity Low_complexity 1 23 0 1 1477 394 290 44 30 chr4 116977481 116977616 -38652504 + MIR SINE MIR 20 156 -106 1 1477 390 194 10 97 chr4 116977867 116977970 -38652150 + MLT1F1 LTR MaLR 1 94 -475 1 1477 401 133 13 0 chr4 116978049 116978124 -38651996 + (TCCC)n Simple_repeat Simple_repeat 3 78 0 1 1477 208 225 0 0 chr4 116978131 116978171 -38651949 + CT-rich Low_complexity Low_complexity 4 43 0 1 1477 338 208 277 0 chr4 116978183 116978284 -38651836 - B1F SINE Alu -19 130 2 1 1477 548 243 158 71 chr4 116978341 116978638 -38651482 + MLT1F1 LTR MaLR 165 487 -82 1 1477 310 277 130 32 chr4 116978668 116978791 -38651329 - RSINE1 SINE B4 -29 136 2 1 1477 263 148 138 0 chr4 116978791 116978847 -38651273 + MLT1F1 LTR MaLR 491 594 -1 1 1477 1070 287 108 91 chr4 116979065 116979660 -38650460 + MLT1G LTR MaLR 1 574 -21 1 1477 231 36 0 0 chr4 116980681 116980709 -38649411 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1477 227 382 88 32 chr4 116980755 116981155 -38648965 + L2 LINE L2 2225 2646 -773 1 1477 729 158 95 29 chr4 116981173 116981310 -38648810 + B1_Mus2 SINE Alu 1 146 -1 1 1477 215 387 0 0 chr4 116981352 116981427 -38648693 - RSINE1 SINE B4 0 165 91 1 1477 688 45 0 0 chr4 116981487 116981575 -38648545 - B1_Mm SINE Alu -2 145 58 1 1477 410 68 17 0 chr4 116981574 116981633 -38648487 - B2_Mm1t SINE B2 -133 60 1 1 1477 777 209 153 11 chr4 116981644 116981833 -38648287 - B3 SINE B2 0 216 1 1 1477 461 302 11 80 chr4 116981873 116982060 -38648060 - B4A SINE B4 -118 174 1 1 1477 234 0 0 0 chr4 116982158 116982184 -38647936 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1477 331 227 87 43 chr4 116982195 116982310 -38647810 - B3 SINE B2 -38 178 59 1 1477 689 117 92 0 chr4 116982414 116982534 -38647586 + B1F SINE Alu 17 147 -2 1 1477 201 39 0 0 chr4 116982540 116982566 -38647554 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1477 424 249 73 78 chr4 116982943 116983135 -38646985 - MER53 DNA hAT -1 192 2 1 1477 306 0 0 0 chr4 116983270 116983304 -38646816 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1477 213 281 69 50 chr4 116983596 116983697 -38646423 - MIRc SINE MIR -65 203 101 1 1477 220 298 9 122 chr4 116983724 116983831 -38646289 - L2a LINE L2 0 3426 3293 1 1477 552 53 0 0 chr4 116984119 116984195 -38645925 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 1 1477 411 107 0 0 chr4 116984195 116984270 -38645850 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1477 275 183 239 0 chr4 116986131 116986202 -38643918 + B1F SINE Alu 48 135 -14 1 1477 231 114 0 0 chr4 116986202 116986237 -38643883 + (GGAGAA)n Simple_repeat Simple_repeat 3 37 0 1 1477 508 243 182 22 chr4 116986306 116986487 -38643633 - ID_B1 SINE B4 -12 212 3 1 1477 284 309 76 33 chr4 116986574 116986766 -38643354 + MIR SINE MIR 17 215 -47 1 1477 473 384 38 12 chr4 116988058 116988298 -38641822 + L2b LINE L2 3097 3342 -33 1 1477 351 0 0 0 chr4 116988723 116988762 -38641358 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1477 327 49 0 0 chr4 116991570 116991611 -38638509 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1 1477 180 0 0 0 chr4 116991860 116991880 -38638240 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1477 379 253 0 117 chr4 116991902 116992005 -38638115 - B4 SINE B4 0 292 202 1 1477 1361 86 21 21 chr4 116992006 116992196 -38637924 + B2_Mm2 SINE B2 3 192 -3 1 1477 420 204 118 50 chr4 116992235 116992354 -38637766 - B1_Mur1 SINE Alu -22 127 1 1 1477 525 239 154 104 chr4 116992354 116992475 -38637645 - B4 SINE B4 -65 227 89 1 1477 1030 124 0 7 chr4 116992475 116992621 -38637499 - B1_Mus1 SINE Alu -3 145 1 1 1477 525 239 154 104 chr4 116992621 116992670 -38637450 - B4 SINE B4 -204 88 48 1 1477 251 214 130 20 chr4 116992678 116992778 -38637342 + L2 LINE L2 1906 2016 -1403 1 1477 193 350 75 34 chr4 116992841 116993137 -38636983 - L2a LINE L2 0 3387 3076 1 1477 21 0 0 0 chr4 116993957 116993978 -38636142 + AT_rich Low_complexity Low_complexity 1 21 0 1 1477 652 123 161 16 chr4 116994018 116994142 -38635978 - B1_Mus1 SINE Alu 0 148 7 1 1477 313 296 76 70 chr4 116994148 116994335 -38635785 + L2b LINE L2 3219 3422 -4 1 1477 524 219 116 0 chr4 116996688 116996834 -38633286 - MER5A1 DNA MER1_type -3 163 1 1 1477 1104 117 28 39 chr4 116997484 116997662 -38632458 - B2_Mm2 SINE B2 -19 176 1 1 1477 475 244 91 56 chr4 116997971 116998114 -38632006 + B1F SINE Alu 1 148 -1 1 1477 264 291 115 11 chr4 116998227 116998314 -38631806 + MIR SINE MIR 88 183 -79 1 1477 596 235 60 7 chr4 116998463 116998613 -38631507 + B3 SINE B2 50 207 -9 1 1477 1139 82 0 13 chr4 116998616 116998765 -38631355 - B1_Mus1 SINE Alu -1 147 1 1 1477 985 63 63 0 chr4 116999195 116999337 -38630783 + B2_Mm2 SINE B2 2 152 -43 1 1477 389 53 0 18 chr4 116999337 116999394 -38630726 + (CATA)n Simple_repeat Simple_repeat 1 56 0 1 1477 391 358 8 0 chr4 117000000 117000120 -38630000 - RSINE1 SINE B4 -42 123 3 1 1477 605 194 15 0 chr4 117001967 117002101 -38628019 + CT-rich Low_complexity Low_complexity 1 136 0 2 1477 629 218 84 16 chr4 117002121 117002237 -38627883 - ID_B1 SINE B4 -19 205 82 3 1477 414 0 0 0 chr4 117002237 117002283 -38627837 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1477 629 218 84 16 chr4 117002283 117002357 -38627763 - ID SINE ID -143 81 2 3 1477 317 239 50 58 chr4 117002426 117002541 -38627579 - MIRm SINE MIR -35 173 58 5 1477 366 23 0 0 chr4 117003689 117003732 -38626388 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1477 904 141 0 12 chr4 117004629 117004794 -38625326 + CT-rich Low_complexity Low_complexity 3 165 0 7 1477 641 153 79 24 chr4 117004805 117004932 -38625188 - B1_Mm SINE Alu 0 147 14 8 1477 303 296 73 29 chr4 117004810 117004946 -38625174 - B4A SINE B4 -68 224 83 9 1477 283 96 39 0 chr4 117004989 117005041 -38625079 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1477 219 80 0 152 chr4 117006823 117006850 -38623270 + A-rich Low_complexity Low_complexity 2 22 0 1 1477 964 137 7 0 chr4 117006850 117006996 -38623124 + B1_Mus2 SINE Alu 1 147 0 1 1477 219 80 0 152 chr4 117006996 117007027 -38623093 + A-rich Low_complexity Low_complexity 23 51 0 1 1477 314 282 82 13 chr4 117007446 117007604 -38622516 + L2 LINE L2 2017 2185 -1234 1 1477 192 289 9 134 chr4 117009166 117009278 -38620842 - L3 LINE CR1 -169 4320 4223 1 1477 961 226 14 23 chr4 117009504 117009715 -38620405 + B3 SINE B2 27 216 0 1 1477 1159 61 0 0 chr4 117009771 117009918 -38620202 + B1_Mus2 SINE Alu 1 147 0 1 1477 32 26 0 0 chr4 117009918 117009957 -38620163 + AT_rich Low_complexity Low_complexity 1 39 0 1 1477 523 295 72 21 chr4 117010430 117010624 -38619496 + MIR SINE MIR 56 259 -3 1 1477 324 0 0 0 chr4 117010664 117010700 -38619420 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1477 676 229 82 36 chr4 117010700 117010895 -38619225 - MTE2a LTR MaLR -10 369 166 2 1477 428 173 243 9 chr4 117010911 117011022 -38619098 - B1_Mur4 SINE Alu -13 137 1 2 1477 397 278 116 17 chr4 117011080 117011252 -38618868 - MTE2a LTR MaLR -230 191 3 2 1477 486 214 18 22 chr4 117011345 117011464 -38618656 - B1_Mur1 SINE Alu -15 134 6 2 1477 268 143 31 31 chr4 117011621 117011686 -38618434 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2 1477 387 0 0 0 chr4 117011999 117012042 -38618078 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1477 796 155 167 27 chr4 117012857 117013043 -38617077 + B3 SINE B2 2 213 -3 2 1477 198 0 0 0 chr4 117013047 117013069 -38617051 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1477 808 158 0 0 chr4 117013383 117013510 -38616610 - B1_Mus1 SINE Alu -19 129 3 2 1477 1164 153 77 0 chr4 117014434 117014643 -38615477 - URR1B DNA MER1_type 0 225 1 2 1477 738 305 73 67 chr4 117014659 117014975 -38615145 + MTE2a LTR MaLR 58 375 -4 3 1477 268 308 18 61 chr4 117015903 117016017 -38614103 + MIRc SINE MIR 110 218 -50 3 1477 360 0 0 0 chr4 117016541 117016581 -38613539 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1477 346 236 23 0 chr4 117016611 117016692 -38613428 - PB1D10 SINE Alu -51 96 11 3 1477 273 164 13 27 chr4 117017356 117017431 -38612689 + CT-rich Low_complexity Low_complexity 3 76 0 3 1477 930 128 244 0 chr4 117017441 117017613 -38612507 - B3 SINE B2 -2 214 1 3 1477 197 311 44 11 chr4 117017744 117017835 -38612285 + MIR SINE MIR 155 248 -14 3 1477 198 0 0 0 chr4 117018379 117018401 -38611719 + (CAT)n Simple_repeat Simple_repeat 2 23 0 3 1477 536 265 171 0 chr4 117018401 117018582 -38611538 - ID_B1 SINE B4 -12 212 1 3 1477 255 239 158 44 chr4 117018745 117018859 -38611261 - L2b LINE L2 -13 3362 3236 3 1477 238 357 35 12 chr4 117018988 117019161 -38610959 - L2 LINE L2 -601 2818 2642 4 1477 514 216 6 6 chr4 117019317 117019494 -38610626 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1477 597 198 18 6 chr4 117019506 117019841 -38610279 + (TG)n Simple_repeat Simple_repeat 1 339 0 4 1477 271 282 14 0 chr4 117019845 117019916 -38610204 - B4A SINE B4 -2 290 219 4 1477 646 288 12 0 chr4 117019979 117020139 -38609981 - RSINE1 SINE B4 0 165 4 4 1477 673 267 141 5 chr4 117020146 117020338 -38609782 - B4A SINE B4 -73 219 2 4 1477 272 282 51 0 chr4 117020507 117020585 -38609535 - L2a LINE L2 0 3426 3345 4 1477 331 249 12 12 chr4 117021345 117021431 -38608689 - BC1_Mm scRNA scRNA -59 93 9 4 1477 234 62 0 0 chr4 117023093 117023125 -38606995 + (CCCCAG)n Simple_repeat Simple_repeat 6 37 0 4 1477 572 224 23 38 chr4 117023575 117023719 -38606401 - B1F2 SINE Alu -2 146 5 4 1477 2123 133 14 0 chr4 117023778 117024132 -38605988 - RLTR15 LTR ERVK 0 359 1 4 1477 204 258 32 53 chr4 117024216 117024310 -38605810 + L2c LINE L2 3256 3347 -40 4 1477 488 277 51 57 chr4 117026995 117027152 -38602968 - RSINE1 SINE B4 -7 158 3 5 1477 461 250 0 108 chr4 117027159 117027289 -38602831 - PB1D7 SINE Alu -4 116 1 5 1477 532 209 181 7 chr4 117027448 117027597 -38602523 - ORR1C2 LTR MaLR -1 383 209 5 1477 398 277 89 32 chr4 117027777 117027967 -38602153 + RMER20B LTR ERVK 180 380 -247 5 1477 237 284 11 69 chr4 117028024 117028077 -38602043 - ORR1C2 LTR MaLR -145 229 177 5 1477 315 0 0 0 chr4 117028077 117028112 -38602008 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1477 237 284 11 69 chr4 117028112 117028145 -38601975 - ORR1C2 LTR MaLR -198 176 148 5 1477 541 180 20 10 chr4 117030266 117030367 -38599753 + PB1D9 SINE Alu 1 102 -18 5 1477 604 310 10 80 chr4 117030916 117031228 -38598892 - B4A SINE B4 0 292 3 5 1477 195 263 17 17 chr4 117031517 117031575 -38598545 + L2a LINE L2 3369 3426 0 5 1477 535 338 24 44 chr4 117033064 117033312 -38596808 + MIRb SINE MIR 25 267 -1 5 1477 185 312 0 0 chr4 117034261 117034309 -38595811 - MIRb SINE MIR -3 265 218 5 1477 221 369 128 50 chr4 117034266 117034560 -38595560 - L2c LINE L2 -12 3375 3045 6 1477 252 147 28 42 chr4 117034616 117034687 -38595433 + GA-rich Low_complexity Low_complexity 3 72 0 6 1477 209 357 91 23 chr4 117035203 117035335 -38594785 - L2c LINE L2 0 3387 3247 6 1477 364 289 139 79 chr4 117036337 117036505 -38593615 - L2b LINE L2 -10 3377 3219 6 1477 195 42 0 0 chr4 117036505 117036529 -38593591 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1477 267 289 139 79 chr4 117036529 117036562 -38593558 - L2b LINE L2 -165 3222 3160 6 1477 333 0 0 0 chr4 117036562 117036599 -38593521 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1477 267 289 139 79 chr4 117036599 117036726 -38593394 - L2b LINE L2 -228 3159 3030 6 1477 406 193 95 12 chr4 117037749 117037833 -38592287 - RSINE1 SINE B4 -72 93 3 6 1477 320 283 106 6 chr4 117037840 117038000 -38592120 + L1ME4a LINE L1 5447 5622 -502 6 1477 339 25 0 0 chr4 117038003 117038043 -38592077 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1477 221 98 0 24 chr4 117038085 117038127 -38591993 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 6 1477 233 271 28 14 chr4 117038129 117038200 -38591920 - ID2 SINE ID -11 72 1 7 1477 271 337 42 0 chr4 117038295 117038390 -38591730 - RSINE1 SINE B4 -23 142 44 7 1477 1186 94 0 27 chr4 117038412 117038449 -38591671 - B2_Mm2 SINE B2 -13 182 149 7 1477 240 59 0 0 chr4 117038449 117038483 -38591637 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 7 1477 1186 94 0 27 chr4 117038483 117038631 -38591489 - B2_Mm2 SINE B2 -47 148 2 7 1477 584 146 11 0 chr4 117038689 117038801 -38591319 + B1_Mus2 SINE Alu 2 119 -1 7 1477 492 359 20 65 chr4 117038802 117039049 -38591071 + L1ME4a LINE L1 5664 5899 -225 6 1477 253 257 148 0 chr4 117039191 117039292 -38590828 - PB1D10 SINE Alu 0 117 2 7 1477 260 266 62 27 chr4 117039292 117039404 -38590716 + L1MD3 LINE L1 7846 7961 -34 7 1477 190 325 25 25 chr4 117039561 117039640 -38590480 - MIRc SINE MIR -173 95 17 7 1477 410 161 22 22 chr4 117040595 117040684 -38589436 - ID SINE ID -135 89 1 7 1477 187 31 30 30 chr4 117041988 117042021 -38588099 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 7 1477 198 71 0 0 chr4 117043419 117043447 -38586673 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 8 1477 217 250 0 0 chr4 117044145 117044189 -38585931 + CT-rich Low_complexity Low_complexity 3 46 0 8 1477 540 170 104 0 chr4 117044201 117044307 -38585813 - B1_Mur2 SINE Alu -11 138 22 8 1477 222 280 107 0 chr4 117044721 117044796 -38585324 + L2a LINE L2 3344 3426 0 8 1477 199 314 37 104 chr4 117045224 117045359 -38584761 - MIRb SINE MIR -37 231 106 8 1477 188 179 0 51 chr4 117046061 117046120 -38584000 + CT-rich Low_complexity Low_complexity 2 57 0 8 1477 180 0 0 0 chr4 117046541 117046561 -38583559 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 8 1478 567 260 8 8 chr4 117047477 117047605 -38582515 + RSINE1 SINE B4 2 129 -36 8 1478 203 256 0 25 chr4 117047605 117047685 -38582435 + GA-rich Low_complexity Low_complexity 2 79 0 8 1478 374 309 69 41 chr4 117048189 117048396 -38581724 + MIRb SINE MIR 47 262 0 8 1478 297 0 0 0 chr4 117049601 117049634 -38580486 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1478 604 174 26 17 chr4 117049651 117049768 -38580352 - PB1D9 SINE Alu -2 118 1 9 1478 230 167 0 23 chr4 117050109 117050152 -38579968 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 9 1478 1003 103 0 0 chr4 117050312 117050448 -38579672 + B1_Mm SINE Alu 1 136 -11 9 1478 284 0 28 0 chr4 117050508 117050544 -38579576 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 1478 1148 36 0 0 chr4 117050544 117050683 -38579437 - B1_Mm SINE Alu -8 139 1 9 1478 808 158 0 8 chr4 117050972 117051106 -38579014 + B1_Mm SINE Alu 2 134 -13 9 1478 243 0 0 0 chr4 117051109 117051136 -38578984 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1478 227 189 0 54 chr4 117051193 117051249 -38578871 + ORR1E LTR MaLR 93 145 -214 9 1478 348 309 11 0 chr4 117051316 117051410 -38578710 + ORR1E LTR MaLR 265 359 0 9 1478 308 310 212 25 chr4 117051483 117051804 -38578316 + L3 LINE CR1 3434 3814 -675 9 1478 403 297 110 40 chr4 117051820 117052020 -38578100 + B4 SINE B4 39 252 -40 1 1478 456 19 0 0 chr4 117052375 117052428 -38577692 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1478 388 178 144 0 chr4 117054154 117054244 -38575876 - PB1D7 SINE Alu 0 120 18 1 1478 482 228 253 0 chr4 117054303 117054465 -38575655 - ID_B1 SINE B4 -17 207 5 1 1478 305 330 56 128 chr4 117055815 117056121 -38573999 + ORR1E LTR MaLR 76 359 0 1 1478 220 334 84 54 chr4 117056608 117056757 -38573363 + MIR SINE MIR 40 187 -75 1 1478 261 0 0 0 chr4 117056819 117056848 -38573272 + (TAG)n Simple_repeat Simple_repeat 1 29 0 1 1478 774 229 76 11 chr4 117057076 117057261 -38572859 + B3A SINE B2 1 197 -1 1 1478 631 300 0 0 chr4 117057285 117057425 -38572695 + RSINE1 SINE B4 13 152 -13 1 1478 22 56 0 0 chr4 117057430 117057466 -38572654 + AT_rich Low_complexity Low_complexity 1 36 0 1 1478 538 155 91 20 chr4 117057498 117057597 -38572523 + B1_Mur2 SINE Alu 42 148 -2 1 1478 242 350 132 13 chr4 117057723 117057882 -38572238 + L3 LINE CR1 4275 4452 -37 1 1478 297 222 109 16 chr4 117057882 117057946 -38572174 - ID2 SINE ID -11 72 3 1 1478 698 56 41 27 chr4 117058317 117058463 -38571657 + (CA)n Simple_repeat Simple_repeat 2 149 0 1 1478 363 23 0 0 chr4 117059132 117059176 -38570944 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1478 303 28 0 0 chr4 117059176 117059211 -38570909 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1478 323 284 0 26 chr4 117059214 117059290 -38570830 - B1F2 SINE Alu -73 76 3 1 1478 295 41 20 20 chr4 117059299 117059349 -38570771 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1478 1249 28 0 0 chr4 117059351 117059492 -38570628 - B1_Mus2 SINE Alu -6 141 1 1 1478 992 219 59 5 chr4 117059517 117059719 -38570401 - B3 SINE B2 -3 213 1 1 1478 675 256 31 79 chr4 117059732 117059950 -38570170 - B4A SINE B4 0 292 67 1 1478 355 368 40 11 chr4 117059950 117060299 -38569821 - L1M5 LINE L1 -309 5815 5457 1 1478 856 164 0 33 chr4 117060300 117060436 -38569684 + B1_Mur3 SINE Alu 3 136 -13 1 1478 225 0 0 0 chr4 117060436 117060461 -38569659 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1478 856 164 0 33 chr4 117060461 117060475 -38569645 + B1_Mur3 SINE Alu 137 148 -1 1 1478 584 234 89 100 chr4 117060483 117060673 -38569447 + B3A SINE B2 8 195 -3 1 1478 649 152 63 16 chr4 117060717 117060844 -38569276 + B1_Mur1 SINE Alu 17 149 0 1 1478 1485 54 16 0 chr4 117060849 117061035 -38569085 + B2_Mm2 SINE B2 1 189 -6 1 1478 180 0 0 0 chr4 117061164 117061184 -38568936 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1478 1173 62 0 14 chr4 117061184 117061321 -38568799 - B1_Mus1 SINE Alu -10 138 2 1 1478 779 272 47 0 chr4 117061515 117061706 -38568414 - ID_B1 SINE B4 -24 200 1 1 1478 390 21 0 0 chr4 117061977 117062024 -38568096 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1478 21 0 0 0 chr4 117062726 117062747 -38567373 + AT_rich Low_complexity Low_complexity 1 21 0 1 1478 213 213 0 0 chr4 117064053 117064100 -38566020 + T-rich Low_complexity Low_complexity 1 47 0 1 1478 207 162 0 0 chr4 117065450 117065487 -38564633 + A-rich Low_complexity Low_complexity 1 37 0 1 1478 435 52 0 0 chr4 117067289 117067347 -38562773 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1478 1019 230 114 19 chr4 117067347 117067598 -38562522 - B4A SINE B4 -10 282 6 1 1478 180 338 36 48 chr4 117067666 117067750 -38562370 + L2a LINE L2 3303 3385 -41 1 1478 210 313 160 58 chr4 117067774 117067930 -38562190 - L3 LINE CR1 -688 3801 3630 1 1478 527 228 143 19 chr4 117068037 117068198 -38561922 + B3A SINE B2 2 182 -16 1 1478 931 206 54 25 chr4 117068244 117068448 -38561672 + B3 SINE B2 1 210 -6 1 1478 342 80 0 0 chr4 117068721 117068771 -38561349 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1478 834 155 48 21 chr4 117068833 117068978 -38561142 - B1_Mur3 SINE Alu 0 149 1 1 1478 1093 104 0 0 chr4 117069076 117069220 -38560900 - B1_Mus1 SINE Alu -3 145 2 1 1478 333 277 35 35 chr4 117069530 117069646 -38560474 - B1F SINE Alu -1 148 33 1 1478 210 227 0 0 chr4 117069802 117069846 -38560274 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1 1478 870 267 47 74 chr4 117070180 117070479 -38559641 - B4A SINE B4 -1 291 1 1 1478 844 302 42 13 chr4 117070782 117071020 -38559100 - MER2 DNA MER2_type -5 340 96 1 1478 345 239 175 2 chr4 117071570 117071666 -38558454 - B1F2 SINE Alu -19 131 21 1 1478 414 283 39 23 chr4 117071695 117071825 -38558295 - ID_B1 SINE B4 0 224 93 1 1478 557 138 78 101 chr4 117072277 117072406 -38557714 - B1_Mur2 SINE Alu 0 149 24 1 1478 470 280 14 43 chr4 117072606 117072744 -38557376 + RSINE1 SINE B4 11 144 -21 1 1478 880 119 48 27 chr4 117072861 117072955 -38557165 + B1_Mur4 SINE Alu 1 98 -52 1 1478 675 37 0 0 chr4 117072955 117073037 -38557083 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1478 880 119 48 27 chr4 117073037 117073089 -38557031 + B1_Mur4 SINE Alu 99 149 -1 1 1478 198 0 0 0 chr4 117073333 117073355 -38556765 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1478 279 0 0 0 chr4 117074123 117074154 -38555966 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1478 1655 190 58 9 chr4 117074214 117074543 -38555577 + RLTR11A2 LTR ERVK 2 346 -181 1 1478 635 184 48 8 chr4 117074557 117074683 -38555437 - B1_Mm SINE Alu -16 131 1 1 1478 520 214 29 80 chr4 117074683 117074739 -38555381 - B4A SINE B4 -206 86 38 1 1478 607 239 23 203 chr4 117074778 117075018 -38555102 + B3A SINE B2 1 198 0 1 1478 662 132 65 16 chr4 117075035 117075158 -38554962 + B1_Mur1 SINE Alu 21 149 0 1 1478 1402 95 16 0 chr4 117075163 117075353 -38554767 + B2_Mm2 SINE B2 1 193 -2 1 1478 733 237 41 51 chr4 117075436 117075632 -38554488 - B3A SINE B2 -1 197 4 1 1478 404 269 7 0 chr4 117076417 117076699 -38553421 + (TG)n Simple_repeat Simple_repeat 1 284 0 1 1478 442 290 36 51 chr4 117076737 117076875 -38553245 - B4A SINE B4 0 292 157 1 1478 250 24 71 0 chr4 117076908 117076950 -38553170 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1 1478 1276 27 0 14 chr4 117076950 117077098 -38553022 - B1_Mus2 SINE Alu 0 147 2 1 1478 331 345 29 0 chr4 117077260 117077399 -38552721 - L2b LINE L2 -18 3357 3215 1 1478 297 0 0 0 chr4 117077746 117077779 -38552341 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1478 261 0 0 0 chr4 117077779 117077807 -38552313 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1478 235 122 41 0 chr4 117078151 117078200 -38551920 + GA-rich Low_complexity Low_complexity 2 52 0 1 1478 187 339 0 0 chr4 117078779 117078835 -38551285 - L3b LINE CR1 -351 131 76 1 1478 297 0 0 0 chr4 117079504 117079537 -38550583 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1478 1240 130 0 40 chr4 117079596 117079797 -38550323 - B2_Mm2 SINE B2 -1 194 2 1 1478 215 179 18 18 chr4 117084161 117084218 -38545902 + G-rich Low_complexity Low_complexity 5 61 0 1 1478 224 246 35 17 chr4 117085587 117085645 -38544475 - MER5A DNA MER1_type -29 160 102 1 1478 228 115 113 19 chr4 117085747 117085800 -38544320 - B1_Mm SINE Alu 0 147 90 1 1478 432 0 0 0 chr4 117085835 117085883 -38544237 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1478 757 266 77 88 chr4 117086039 117086311 -38543809 + B4A SINE B4 1 269 -23 1 1478 762 84 0 0 chr4 117086311 117086418 -38543702 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 1478 482 226 32 0 chr4 117087117 117087210 -38542910 + RSINE1 SINE B4 2 97 -68 1 1478 407 137 14 0 chr4 117087238 117087311 -38542809 + (CAGA)n Simple_repeat Simple_repeat 2 75 0 1 1478 288 0 0 0 chr4 117087350 117087382 -38542738 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1478 254 261 248 18 chr4 117088726 117088839 -38541281 - L2a LINE L2 -4 3422 3284 1 1478 513 32 0 0 chr4 117088963 117089026 -38541094 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1478 185 0 40 0 chr4 117089026 117089050 -38541070 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1478 467 215 82 30 chr4 117089074 117089208 -38540912 + Lx8 LINE L1 7137 7277 -196 1 1478 351 0 0 0 chr4 117089216 117089255 -38540865 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1478 26 0 0 0 chr4 117089347 117089373 -38540747 + AT_rich Low_complexity Low_complexity 1 26 0 1 1478 404 222 274 0 chr4 117089387 117089504 -38540616 + B1F SINE Alu 1 149 0 1 1478 357 236 171 33 chr4 117089767 117089977 -38540143 - L2a LINE L2 -647 2772 2534 1 1478 2147 168 41 43 chr4 117089983 117090400 -38539720 + MTD LTR MaLR 3 418 -1 1 1478 492 296 284 19 chr4 117090464 117090894 -38539226 - L2a LINE L2 -945 2474 1931 1 1478 365 315 162 16 chr4 117091037 117091340 -38538780 - L2a LINE L2 -2209 1210 864 1 1478 441 308 69 19 chr4 117091341 117091500 -38538620 + MER5A DNA MER1_type 23 189 0 1 1478 1048 89 31 72 chr4 117091778 117091972 -38538148 + B2_Mm1t SINE B2 1 186 -7 1 1478 766 195 12 24 chr4 117092151 117092230 -38537890 + ID SINE ID 1 77 -147 1 1478 356 271 45 36 chr4 117092230 117092341 -38537779 + PB1D10 SINE Alu 1 112 -5 1 1478 204 40 0 0 chr4 117093107 117093132 -38536988 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1 1478 524 289 30 0 chr4 117093488 117093623 -38536497 - RSINE1 SINE B4 -13 152 14 1 1478 1032 177 86 0 chr4 117093657 117093843 -38536277 - B3 SINE B2 -14 202 1 1 1478 319 277 67 31 chr4 117094213 117094468 -38535652 - L1MB7 LINE L1 -24 6154 5887 1 1478 821 159 0 0 chr4 117094474 117094600 -38535520 - B1_Mur3 SINE Alu -2 147 22 1 1478 34 80 0 26 chr4 117094616 117094732 -38535388 + AT_rich Low_complexity Low_complexity 1 113 0 1 1478 662 301 13 4 chr4 117094737 117094964 -38535156 - L1MB7 LINE L1 -317 5867 5639 1 1478 229 346 56 37 chr4 117095067 117095175 -38534945 + Tigger7 DNA MER2_type 2133 2242 -249 2 1478 1238 67 24 0 chr4 117095184 117095348 -38534772 - B2_Mm2 SINE B2 -26 169 2 2 1478 326 276 149 23 chr4 117095355 117095529 -38534591 - L1MB7 LINE L1 -577 5601 5406 1 1478 327 276 26 70 chr4 117095735 117095891 -38534229 - L1MB7 LINE L1 -2157 3989 3841 1 1478 302 215 15 15 chr4 117095901 117095967 -38534153 - PB1D10 SINE Alu -5 112 47 2 1478 323 229 0 24 chr4 117095975 117096060 -38534060 - L1MB7 LINE L1 -2298 3848 3766 1 1478 198 0 0 0 chr4 117096072 117096094 -38534026 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1478 28 0 0 0 chr4 117096124 117096152 -38533968 + AT_rich Low_complexity Low_complexity 1 28 0 2 1478 631 202 0 0 chr4 117096158 117096262 -38533858 - B1_Mus2 SINE Alu 0 147 44 2 1478 226 283 71 0 chr4 117096262 117096375 -38533745 + L1M5 LINE L1 3554 3674 -2472 2 1478 1009 122 7 45 chr4 117096389 117096543 -38533577 + B1_Mur2 SINE Alu 2 149 0 2 1478 477 0 0 0 chr4 117096575 117096628 -38533492 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 2 1478 1154 68 7 7 chr4 117096637 117096784 -38533336 + B1_Mus2 SINE Alu 1 147 0 2 1478 300 111 0 0 chr4 117096784 117096838 -38533282 + (A)n Simple_repeat Simple_repeat 1 54 0 2 1478 483 244 8 40 chr4 117096838 117096962 -38533158 - MTD LTR MaLR -299 120 1 2 1478 242 268 0 47 chr4 117096964 117097050 -38533070 - L1MB7 LINE L1 -2794 3352 3271 1 1478 198 174 0 0 chr4 117097108 117097154 -38532966 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 2 1478 393 189 14 0 chr4 117097163 117097237 -38532883 - ID_B1 SINE B4 -21 203 129 2 1478 1374 45 0 14 chr4 117097320 117097681 -38532439 + (TTC)n Simple_repeat Simple_repeat 1 356 0 2 1478 207 0 0 0 chr4 117097681 117097704 -38532416 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 2 1478 216 67 0 0 chr4 117097909 117097939 -38532181 + (TGG)n Simple_repeat Simple_repeat 3 32 0 2 1478 369 0 0 0 chr4 117097951 117097992 -38532128 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2 1478 901 203 0 0 chr4 117098004 117098152 -38531968 - RSINE1 SINE B4 -12 153 6 2 1478 211 290 16 16 chr4 117098321 117098384 -38531736 + L2b LINE L2 3313 3375 0 2 1478 667 104 27 45 chr4 117098647 117098758 -38531362 - B1_Mur1 SINE Alu 0 149 41 2 1478 226 205 10 137 chr4 117098672 117098774 -38531346 - RLTR25B LTR ERVK -508 520 432 2 1478 306 254 0 0 chr4 117099066 117099125 -38530995 - ID4_ SINE ID -21 62 4 2 1478 762 282 36 18 chr4 117099201 117099421 -38530699 - MIR SINE MIR 0 262 39 2 1478 21 36 0 0 chr4 117100059 117100087 -38530033 + AT_rich Low_complexity Low_complexity 1 28 0 2 1478 457 283 115 42 chr4 117101291 117101483 -38528637 + MLT1J2 LTR MaLR 1 206 -242 2 1478 517 316 123 14 chr4 117102834 117103046 -38527074 + MIR SINE MIR 18 252 -10 2 1478 686 101 0 9 chr4 117103148 117103258 -38526862 + (TTTC)n Simple_repeat Simple_repeat 3 111 0 2 1478 366 286 0 0 chr4 117103272 117103349 -38526771 + B4 SINE B4 1 77 -215 2 1478 672 176 0 0 chr4 117103357 117103488 -38526632 + GA-rich Low_complexity Low_complexity 2 132 0 2 1478 216 67 0 0 chr4 117104659 117104689 -38525431 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 2 1478 769 92 17 0 chr4 117104689 117104809 -38525311 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 2 1478 810 197 13 13 chr4 117104810 117104959 -38525161 - B1_Mur2 SINE Alu 0 149 1 2 1478 495 277 73 35 chr4 117105241 117105556 -38524564 - L1ME3B LINE L1 -233 6007 5686 2 1478 912 145 7 7 chr4 117105635 117105781 -38524339 + B1_Mur2 SINE Alu 4 149 0 2 1478 304 218 67 1 chr4 117105881 117105982 -38524138 + MIR SINE MIR 76 181 -87 2 1478 537 286 159 26 chr4 117106043 117106276 -38523844 - Tigger13a DNA MER2_type -44 727 464 2 1478 563 343 44 41 chr4 117106361 117106680 -38523440 - Tigger13a DNA MER2_type -443 328 9 2 1478 1407 163 68 19 chr4 117107612 117107907 -38522213 + MTD LTR MaLR 5 316 -105 2 1478 318 26 0 0 chr4 117108124 117108163 -38521957 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1478 1149 49 0 21 chr4 117108163 117108300 -38521820 - B1_Mus2 SINE Alu -10 137 1 2 1478 264 213 33 0 chr4 117108326 117108387 -38521733 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 2 1478 669 296 45 96 chr4 117108480 117108771 -38521349 + B4 SINE B4 3 278 -14 2 1478 1297 34 0 0 chr4 117108900 117109047 -38521073 + B1_Mus1 SINE Alu 2 148 0 2 1478 243 0 0 0 chr4 117109047 117109074 -38521046 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1478 343 215 153 160 chr4 117109193 117109337 -38520783 - RSINE1 SINE B4 0 165 23 2 1478 242 0 61 0 chr4 117109350 117109383 -38520737 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1478 303 284 14 0 chr4 117109870 117109944 -38520176 - RMER30 DNA MER1_type -28 174 100 2 1478 522 0 0 0 chr4 117109957 117110015 -38520105 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1478 250 301 41 0 chr4 117110193 117110266 -38519854 - ID4 SINE ID 0 83 8 2 1478 274 345 95 44 chr4 117110589 117111020 -38519100 + L2 LINE L2 2425 2877 -542 2 1478 192 77 0 0 chr4 117111054 117111080 -38519040 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1478 322 309 98 28 chr4 117111082 117111225 -38518895 - RSINE1 SINE B4 -10 155 3 2 1478 799 129 0 0 chr4 117111368 117111484 -38518636 + B1_Mus1 SINE Alu 1 116 -32 2 1478 279 0 0 0 chr4 117111563 117111594 -38518526 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1478 654 258 129 0 chr4 117111594 117111780 -38518340 - ID_B1 SINE B4 -12 212 3 2 1478 180 111 0 0 chr4 117112344 117112371 -38517749 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 1478 644 170 306 6 chr4 117112424 117112584 -38517536 + B3 SINE B2 5 212 -4 2 1478 403 254 11 14 chr4 117112603 117112702 -38517418 + B1F1 SINE Alu 1 95 -219 2 1478 520 53 13 13 chr4 117112760 117112837 -38517283 + (TCC)n Simple_repeat Simple_repeat 1 77 0 2 1478 444 188 169 57 chr4 117112856 117112980 -38517140 - B1_Mur1 SINE Alu 0 149 12 2 1478 300 283 70 70 chr4 117113183 117113369 -38516751 - HAL1 LINE L1 -24 2483 2298 2 1478 351 0 0 0 chr4 117113377 117113416 -38516704 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1478 228 341 68 23 chr4 117114468 117114600 -38515520 + MLT1H2 LTR MaLR 62 199 -290 2 1478 818 285 22 41 chr4 117115220 117115491 -38514629 + MTE2a LTR MaLR 1 266 -113 2 1478 624 241 162 27 chr4 117115526 117115715 -38514405 + MTE2b LTR MaLR 184 379 0 2 1478 715 260 66 6 chr4 117115843 117116025 -38514095 - ID_B1 SINE B4 0 224 32 2 1478 444 197 0 0 chr4 117116146 117116217 -38513903 - LSU-rRNA_Hsa rRNA rRNA -1066 3969 3899 2 1478 697 267 73 36 chr4 117116225 117116555 -38513565 - Arthur1 DNA Tip100 -197 3750 3409 2 1478 572 354 64 152 chr4 117116789 117117220 -38512900 - Arthur1 DNA Tip100 -3116 831 504 2 1478 863 244 9 43 chr4 117117220 117117430 -38512690 - B3 SINE B2 -11 205 3 2 1478 571 353 65 155 chr4 117117430 117117801 -38512319 - Arthur1 DNA Tip100 -3444 503 114 2 1478 666 212 53 0 chr4 117117801 117117933 -38512187 + B1F SINE Alu 1 139 -10 2 1478 571 353 65 155 chr4 117117933 117118001 -38512119 - Arthur1 DNA Tip100 -3834 113 46 2 1478 370 331 29 14 chr4 117118968 117119106 -38511014 + LTR16C LTR ERVL 191 330 -159 2 1478 549 179 52 136 chr4 117119247 117119402 -38510718 + MTE2a LTR MaLR 1 142 -237 2 1478 437 239 27 27 chr4 117119398 117119510 -38510610 + MTE2a LTR MaLR 267 378 -1 2 1478 313 287 160 0 chr4 117120280 117120430 -38509690 + Tigger13a DNA MER2_type 185 358 -413 2 1478 1140 68 7 0 chr4 117120453 117120600 -38509520 - B1_Mus1 SINE Alu 0 148 1 2 1478 218 314 259 26 chr4 117120658 117120851 -38509269 - MIR SINE MIR -21 241 4 2 1478 1307 75 0 5 chr4 117120917 117121132 -38508988 + (TG)n Simple_repeat Simple_repeat 1 213 0 2 1478 1087 266 27 0 chr4 117121135 117121391 -38508729 - B4A SINE B4 -29 263 1 2 1478 248 0 31 0 chr4 117121394 117121426 -38508694 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 2 1478 517 315 157 0 chr4 117121429 117121645 -38508475 + Tigger13a DNA MER2_type 480 729 -42 2 1478 941 256 5 0 chr4 117121858 117122081 -38508039 - ID_B1 SINE B4 0 224 1 2 1478 243 0 0 0 chr4 117122285 117122312 -38507808 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1478 204 360 43 50 chr4 117122671 117122832 -38507288 - L2 LINE L2 -457 2962 2803 2 1478 337 342 16 49 chr4 117122846 117122969 -38507151 + B4A SINE B4 1 119 -173 2 1478 770 100 7 0 chr4 117122970 117123110 -38507010 + (TC)n Simple_repeat Simple_repeat 2 142 0 2 1478 297 0 0 0 chr4 117123112 117123145 -38506975 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1478 379 280 22 101 chr4 117123308 117123319 -38506801 + ID_B1 SINE B4 97 155 -69 2 1478 513 276 0 17 chr4 117123319 117123437 -38506683 + B1F SINE Alu 24 139 -10 2 1478 511 303 16 64 chr4 117124388 117124575 -38505545 + Charlie1 DNA MER1_type 19 196 -2585 2 1478 1184 48 14 0 chr4 117124730 117124875 -38505245 - B1_Mus2 SINE Alu 0 147 1 2 1478 875 170 0 7 chr4 117124881 117125029 -38505091 - B1_Mur3 SINE Alu -1 148 2 2 1478 3384 31 18 0 chr4 117125096 117125485 -38504635 + MTA_Mm LTR MaLR 1 396 0 2 1478 594 196 10 0 chr4 117125641 117125743 -38504377 + B1_Mur1 SINE Alu 40 142 -7 2 1478 901 140 7 0 chr4 117125776 117125912 -38504208 + B1_Mur3 SINE Alu 3 139 -10 2 1478 916 209 75 0 chr4 117126211 117126412 -38503708 + B3 SINE B2 1 216 0 2 1478 270 196 0 0 chr4 117126442 117126488 -38503632 + B4 SINE B4 2 47 -245 2 1478 198 103 0 0 chr4 117126811 117126840 -38503280 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1478 2009 129 20 90 chr4 117127329 117127729 -38502391 + ORR1D1 LTR MaLR 1 372 -2 2 1478 256 289 152 30 chr4 117128214 117128346 -38501774 - MamRep605 Unknown Unknown -132 744 597 2 1478 696 265 31 31 chr4 117128619 117128841 -38501279 + ID_B1 SINE B4 3 224 0 2 1478 236 344 43 11 chr4 117128881 117128975 -38501145 + MIRb SINE MIR 164 260 -8 2 1478 195 42 0 0 chr4 117129243 117129267 -38500853 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1478 408 117 0 0 chr4 117129267 117129344 -38500776 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1478 330 275 0 0 chr4 117129349 117129418 -38500702 - ID4 SINE ID -14 69 1 3 1478 347 198 215 9 chr4 117130318 117130425 -38499695 - B3 SINE B2 0 216 88 3 1478 2546 173 39 37 chr4 117130425 117130942 -38499178 + RLTR11A2 LTR ERVK 1 518 -9 3 1478 628 156 0 0 chr4 117130944 117131040 -38499080 - B3 SINE B2 -120 96 1 3 1478 256 245 94 0 chr4 117131146 117131199 -38498921 + B1F SINE Alu 2 59 -90 3 1478 400 111 28 0 chr4 117131199 117131271 -38498849 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 1478 1910 287 127 51 chr4 117131438 117131843 -38498277 + Lx9 LINE L1 4387 4852 -1028 3 1478 255 31 0 0 chr4 117131843 117131875 -38498245 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1478 1910 287 127 51 chr4 117131875 117132469 -38497651 + Lx9 LINE L1 4853 5433 -447 3 1478 702 91 0 0 chr4 117132469 117132568 -38497552 + (TTTTC)n Simple_repeat Simple_repeat 2 100 0 3 1478 1233 48 0 0 chr4 117132568 117132713 -38497407 - B1_Mus1 SINE Alu -3 145 1 3 1478 1910 288 130 49 chr4 117132713 117133114 -38497006 + Lx9 LINE L1 5434 5903 -1741 3 1478 282 29 0 0 chr4 117133139 117133174 -38496946 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1478 391 253 101 12 chr4 117133955 117134123 -38495997 + L1MA5A LINE L1 5721 5903 -397 3 1478 411 312 98 50 chr4 117134350 117134523 -38495597 + L1ME3B LINE L1 5551 5749 -491 3 1478 796 159 23 0 chr4 117134523 117134655 -38495465 + B1F2 SINE Alu 4 138 -11 3 1478 198 0 0 0 chr4 117134655 117134677 -38495443 + (CAA)n Simple_repeat Simple_repeat 2 23 0 3 1478 411 312 98 50 chr4 117134677 117134961 -38495159 + L1ME3B LINE L1 5750 6030 -210 3 1478 187 386 30 0 chr4 117135307 117135400 -38494720 - L2 LINE L2 -830 2589 2494 3 1478 1496 189 147 33 chr4 117135400 117135733 -38494387 - ORR1D1 LTR MaLR -3 371 1 3 1478 817 199 0 20 chr4 117135771 117135920 -38494200 - B1F2 SINE Alu -1 148 3 3 1478 383 98 0 16 chr4 117136666 117136728 -38493392 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1478 680 267 95 31 chr4 117136777 117137094 -38493026 - RLTR15 LTR ERVK -16 343 7 3 1478 589 135 56 37 chr4 117137113 117137208 -38492912 + B1_Mur3 SINE Alu 36 136 -13 3 1478 315 0 0 0 chr4 117137208 117137243 -38492877 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 1478 589 135 56 37 chr4 117137243 117137255 -38492865 + B1_Mur3 SINE Alu 137 145 -4 3 1478 645 215 45 23 chr4 117137583 117137716 -38492404 + B1_Mur1 SINE Alu 13 148 -1 3 1478 379 291 82 0 chr4 117137740 117137850 -38492270 + PB1D7 SINE Alu 1 119 -1 3 1478 983 117 0 20 chr4 117137938 117138086 -38492034 - B1_Mur3 SINE Alu 0 149 5 3 1478 311 316 70 32 chr4 117138118 117138275 -38491845 + L1M5 LINE L1 5366 5528 -596 3 1478 238 286 137 39 chr4 117138477 117138579 -38491541 - MIRb SINE MIR -123 145 34 3 1478 497 319 98 19 chr4 117139584 117139798 -38490322 + MER121 Unknown Unknown 172 402 -10 3 1478 236 100 0 24 chr4 117139893 117139934 -38490186 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 3 1478 787 296 103 45 chr4 117140628 117140912 -38489208 + B4A SINE B4 2 292 0 3 1478 348 64 0 0 chr4 117140922 117140969 -38489151 + (CATA)n Simple_repeat Simple_repeat 4 50 0 3 1478 1503 16 20 66 chr4 117141458 117141656 -38488464 - B2_Mm1a SINE B2 -1 192 4 3 1478 645 209 104 7 chr4 117141827 117141838 -38488282 - B1_Mur3 SINE Alu -1 148 138 3 1478 297 0 0 0 chr4 117141838 117141871 -38488249 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1478 645 209 104 7 chr4 117141871 117141994 -38488126 - B1_Mur3 SINE Alu -12 137 1 3 1478 446 335 48 13 chr4 117142017 117142247 -38487873 - MER97a DNA MER1_type? -84 810 573 3 1478 223 304 0 0 chr4 117142253 117142309 -38487811 + BC1_Mm scRNA scRNA 30 85 -67 3 1478 474 268 89 110 chr4 117142321 117142548 -38487572 + B4A SINE B4 1 230 -62 3 1478 216 0 0 0 chr4 117142548 117142572 -38487548 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1478 474 268 89 110 chr4 117142572 117142625 -38487495 + B4A SINE B4 231 274 -18 3 1478 230 287 42 84 chr4 117142628 117142723 -38487397 - MER97a DNA MER1_type? -321 573 483 3 1478 268 217 53 126 chr4 117142863 117142958 -38487162 - PB1D7 SINE Alu -11 109 22 3 1478 519 236 2 0 chr4 117142875 117142983 -38487137 - ID_B1 SINE B4 -39 185 81 3 1478 762 264 53 16 chr4 117142996 117143185 -38486935 - ID_B1 SINE B4 0 224 29 3 1478 282 150 0 0 chr4 117143177 117143217 -38486903 - PB1D9 SINE Alu -80 40 1 3 1478 812 37 0 0 chr4 117143878 117143986 -38486134 + L1Md_T LINE L1 6475 6582 0 3 1478 21 36 0 0 chr4 117144073 117144101 -38486019 + AT_rich Low_complexity Low_complexity 1 28 0 3 1478 252 143 0 0 chr4 117144123 117144165 -38485955 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1478 1004 102 0 7 chr4 117144283 117144421 -38485699 - B1_Mus2 SINE Alu -2 145 9 3 1478 351 0 0 0 chr4 117144521 117144560 -38485560 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1478 1108 187 44 0 chr4 117144663 117144866 -38485254 - B3 SINE B2 0 216 5 3 1478 472 303 0 32 chr4 117144917 117145043 -38485077 - RSINE1 SINE B4 -33 132 11 3 1478 183 114 0 0 chr4 117146629 117146664 -38483456 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1478 214 233 68 0 chr4 117146677 117146750 -38483370 + (CCCCAG)n Simple_repeat Simple_repeat 2 79 0 3 1478 609 231 8 0 chr4 117147066 117147183 -38482937 + ID_B1 SINE B4 82 199 -25 3 1478 444 62 0 0 chr4 117147236 117147300 -38482820 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1478 21 36 0 0 chr4 117147888 117147916 -38482204 + AT_rich Low_complexity Low_complexity 1 28 0 3 1478 369 176 0 56 chr4 117147925 117147997 -38482123 - ID4_ SINE ID -13 70 3 3 1478 489 292 86 29 chr4 117148064 117148293 -38481827 + MIR SINE MIR 29 247 -21 3 1478 684 24 0 0 chr4 117149226 117149308 -38480812 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1478 1096 92 0 0 chr4 117149309 117149451 -38480669 - B1_Mus1 SINE Alu -6 142 1 3 1478 209 338 29 14 chr4 117149458 117149527 -38480593 - MIR SINE MIR -58 150 81 3 1478 667 200 56 14 chr4 117151456 117151598 -38478522 - B1_Mur1 SINE Alu -1 148 1 3 1478 213 353 8 41 chr4 117152041 117152162 -38477958 + L2b LINE L2 3253 3369 -6 3 1478 355 269 8 100 chr4 117152277 117152397 -38477723 + MT2B LTR ERVL 156 264 -337 3 1478 716 234 14 14 chr4 117152295 117152434 -38477686 + B1_Mur3 SINE Alu 11 149 0 3 1478 375 237 34 34 chr4 117153049 117153167 -38476953 + PB1 SINE Alu 1 118 -9 3 1478 183 42 0 0 chr4 117153167 117153191 -38476929 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 1478 207 69 0 0 chr4 117154257 117154286 -38475834 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 3 1478 311 311 125 7 chr4 117154466 117154602 -38475518 - MIRb SINE MIR -73 195 40 3 1478 216 0 0 0 chr4 117154750 117154774 -38475346 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1478 384 22 0 0 chr4 117155603 117155648 -38474472 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1478 243 0 0 0 chr4 117155831 117155858 -38474262 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3 1478 532 200 0 0 chr4 117155859 117155949 -38474171 - B1_Mur3 SINE Alu -58 91 2 3 1478 349 244 0 95 chr4 117155865 117155960 -38474160 - MT2B LTR ERVL -361 240 155 3 1478 34 24 0 0 chr4 117156476 117156517 -38473603 + AT_rich Low_complexity Low_complexity 1 41 0 3 1478 459 0 0 0 chr4 117161741 117161792 -38468328 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1478 22 35 0 0 chr4 117167703 117167732 -38462388 + GC_rich Low_complexity Low_complexity 1 29 0 3 1478 326 321 68 13 chr4 117168229 117168399 -38461721 + L1MEg LINE L1 1973 2110 -4132 3 1478 260 172 0 17 chr4 117169382 117169441 -38460679 + (CGG)n Simple_repeat Simple_repeat 1 58 0 3 1478 309 197 0 0 chr4 117169586 117169662 -38460458 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1478 298 262 130 30 chr4 117170248 117170417 -38459703 - MIRb SINE MIR -3 265 80 3 1478 649 194 36 0 chr4 117170687 117170826 -38459294 + B1F SINE Alu 1 144 -5 3 1478 613 190 48 21 chr4 117171140 117171285 -38458835 + B1_Mur4 SINE Alu 1 149 -1 3 1478 203 119 23 23 chr4 117171331 117171374 -38458746 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1478 234 343 78 0 chr4 117171479 117171581 -38458539 - MER94 DNA AcHobo 0 134 25 3 1478 411 282 9 26 chr4 117172061 117172174 -38457946 - PB1D10 SINE Alu -6 111 1 3 1478 635 223 7 33 chr4 117172195 117172348 -38457772 - B1_Mur4 SINE Alu -1 149 1 3 1478 1136 284 26 11 chr4 117172586 117172853 -38457267 + Tigger15a DNA TcMar 4 274 -441 3 1478 303 327 90 42 chr4 117172889 117173055 -38457065 + L1ME4a LINE L1 5846 6019 -105 3 1478 641 284 77 67 chr4 117173192 117173262 -38456858 - B4 SINE B4 0 292 86 3 1478 698 173 52 59 chr4 117173262 117173397 -38456723 - B1_Mur3 SINE Alu -15 134 1 3 1478 959 250 19 0 chr4 117173401 117173613 -38456507 - B3 SINE B2 0 216 1 3 1478 995 217 35 26 chr4 117173615 117173842 -38456278 - B4A SINE B4 -63 229 1 3 1478 333 0 0 0 chr4 117174180 117174217 -38455903 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1478 401 289 9 19 chr4 117174242 117174348 -38455772 - PB1D10 SINE Alu -11 106 2 3 1478 201 239 172 22 chr4 117174405 117174494 -38455626 - L2a LINE L2 -10 3416 3290 3 1478 661 220 126 35 chr4 117174703 117174901 -38455219 + B3 SINE B2 1 216 0 3 1478 1234 281 87 71 chr4 117175318 117175824 -38454296 + MT2A LTR ERVL 16 529 -4 3 1478 558 139 0 0 chr4 117176073 117176152 -38453968 - B1_Mur3 SINE Alu -29 120 42 3 1478 229 188 110 73 chr4 117176087 117176196 -38453924 - RLTR25B LTR ERVK -519 509 397 3 1478 576 170 0 0 chr4 117176215 117176321 -38453799 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 3 1478 447 187 77 21 chr4 117176922 117177018 -38453102 + L2c LINE L2 3299 3425 -1 3 1478 180 0 0 0 chr4 117177499 117177519 -38452601 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1478 1043 191 28 5 chr4 117177796 117178007 -38452113 - B3 SINE B2 0 216 1 4 184 1633 26 16 0 chr4 117178209 117178398 -38451722 + B2_Mm1a SINE B2 2 193 0 4 1479 283 299 92 60 chr4 117178487 117178672 -38451448 + MIRb SINE MIR 47 237 -31 4 1479 370 153 0 40 chr4 117178902 117178977 -38451143 - PB1D9 SINE Alu -1 119 48 4 1479 561 263 83 0 chr4 117179095 117179228 -38450892 - RSINE1 SINE B4 -5 160 17 4 1479 367 236 21 23 chr4 117179366 117179481 -38450639 - PB1D10 SINE Alu -6 111 1 4 1479 477 0 0 0 chr4 117179842 117179895 -38450225 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1479 735 169 0 0 chr4 117179983 117180131 -38449989 + CT-rich Low_complexity Low_complexity 1 148 0 4 1479 267 314 135 7 chr4 117180143 117180170 -38449950 - B4A SINE B4 -46 246 88 4 1479 493 187 64 4 chr4 117180170 117180284 -38449836 - B1_Mur3 SINE Alu 0 120 3 4 1479 1308 97 11 21 chr4 117180347 117180537 -38449583 - B2_Mm2 SINE B2 -7 188 1 4 1479 26 0 0 0 chr4 117180544 117180570 -38449550 + AT_rich Low_complexity Low_complexity 1 26 0 4 1479 343 329 45 32 chr4 117180879 117181033 -38449087 + L2b LINE L2 3220 3375 0 4 1479 1292 102 37 16 chr4 117181879 117182069 -38448051 + B2_Mm2 SINE B2 1 194 -1 4 1479 350 158 0 0 chr4 117182108 117182165 -38447955 + PB1D9 SINE Alu 53 109 -11 4 1479 812 95 24 0 chr4 117182165 117182291 -38447829 + (GGAAA)n Simple_repeat Simple_repeat 3 131 0 4 1479 416 273 0 0 chr4 117182813 117182890 -38447230 + ID_B1 SINE B4 79 155 -69 4 1479 887 146 0 0 chr4 117182891 117183021 -38447099 + B3 SINE B2 1 130 -86 4 1479 186 103 0 0 chr4 117183023 117183052 -38447068 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 1479 449 191 46 2 chr4 117183156 117183247 -38446873 + RSINE1 SINE B4 28 122 -43 4 1479 261 109 0 0 chr4 117183260 117183306 -38446814 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1479 270 56 0 0 chr4 117183955 117183991 -38446129 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1479 297 100 0 0 chr4 117184063 117184113 -38446007 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1479 490 141 13 0 chr4 117184738 117184816 -38445304 - B1_Mur3 SINE Alu -70 79 1 4 1479 207 162 0 0 chr4 117185091 117185128 -38444992 + CT-rich Low_complexity Low_complexity 5 41 0 4 1479 992 136 6 0 chr4 117185150 117185326 -38444794 + (TTC)n Simple_repeat Simple_repeat 1 177 0 4 1479 974 152 6 0 chr4 117185340 117185517 -38444603 + CT-rich Low_complexity Low_complexity 1 178 0 4 1479 198 340 144 47 chr4 117185536 117185940 -38444180 + L2 LINE L2 2053 2495 -924 4 1479 427 278 80 29 chr4 117185971 117186108 -38444012 - B1F1 SINE Alu -5 144 1 4 1479 33 0 0 0 chr4 117186114 117186147 -38443973 + AT_rich Low_complexity Low_complexity 1 33 0 4 1479 541 266 9 0 chr4 117186903 117187016 -38443104 - B1F1 SINE Alu -26 123 10 4 1479 252 284 97 10 chr4 117187022 117187125 -38442995 + L2 LINE L2 2592 2703 -716 4 1479 942 157 31 0 chr4 117187247 117187406 -38442714 - URR1A DNA MER1_type -1 225 62 4 1479 529 247 22 2 chr4 117187459 117187627 -38442493 - B3 SINE B2 -4 194 3 4 1479 595 254 0 0 chr4 117187685 117187803 -38442317 + ID_B1 SINE B4 84 201 -23 4 1479 910 146 6 6 chr4 117187810 117187982 -38442138 + (TAGA)n Simple_repeat Simple_repeat 4 175 0 4 1479 462 252 63 24 chr4 117188001 117188126 -38441994 + MLT2B2 LTR ERVL 1 130 -385 4 1479 354 269 174 98 chr4 117188126 117188361 -38441759 + ORR1E LTR MaLR 1 253 -106 4 1479 3880 131 82 34 chr4 117188359 117189064 -38441056 - RMER6A LTR ERVK -16 740 2 4 1479 294 247 73 12 chr4 117189128 117189210 -38440910 + ORR1E LTR MaLR 293 379 0 4 1479 1007 318 80 11 chr4 117189210 117189548 -38440572 + MLT2B2 LTR ERVL 153 515 0 4 1479 256 302 0 16 chr4 117189593 117189657 -38440463 + polypyrimidine Low_complexity Low_complexity 1 63 0 4 1479 190 260 89 25 chr4 117189695 117189774 -38440346 + MIR SINE MIR 172 255 -7 4 1479 735 112 0 0 chr4 117189829 117189945 -38440175 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 4 1479 801 134 89 7 chr4 117190116 117190251 -38439869 + B1_Mur4 SINE Alu 5 150 0 4 1479 522 240 58 0 chr4 117190763 117190884 -38439236 + ID_B1 SINE B4 96 223 -1 4 1479 372 258 19 20 chr4 117190963 117191100 -38439020 - B3A SINE B2 -8 187 55 4 1479 332 243 64 64 chr4 117191477 117191587 -38438533 + B3A SINE B2 89 198 0 4 1479 815 186 0 0 chr4 117191738 117191867 -38438253 + B3 SINE B2 2 130 -86 4 1479 331 360 20 13 chr4 117191965 117192117 -38438003 + HAL1b LINE L1 1173 1325 -684 4 1479 1244 109 10 30 chr4 117192172 117192371 -38437749 - B2_Mm2 SINE B2 0 195 1 4 1479 268 297 99 88 chr4 117192631 117192823 -38437297 + MLT1A0 LTR MaLR 130 323 -42 4 1479 491 286 35 57 chr4 117192871 117193012 -38437108 - B1F SINE Alu -11 138 1 4 1479 241 225 37 12 chr4 117193086 117193167 -38436953 - L1M5 LINE L1 -670 5454 5372 4 1479 888 169 7 0 chr4 117193458 117193600 -38436520 + B1_Mur4 SINE Alu 7 149 -1 4 1479 335 295 44 88 chr4 117193461 117193621 -38436499 + B4A SINE B4 94 246 -46 4 1479 679 124 16 8 chr4 117193621 117193743 -38436377 + (GAAA)n Simple_repeat Simple_repeat 3 125 0 4 1479 715 183 251 12 chr4 117193780 117193951 -38436169 - B3 SINE B2 -4 212 1 4 1479 409 276 258 19 chr4 117194079 117194238 -38435882 + B3A SINE B2 1 197 -1 4 1479 1075 189 75 0 chr4 117194413 117194614 -38435506 + B3 SINE B2 1 216 0 4 1479 25 0 0 0 chr4 117194616 117194641 -38435479 + AT_rich Low_complexity Low_complexity 1 25 0 4 1479 921 134 0 0 chr4 117194681 117194830 -38435290 + (GAA)n Simple_repeat Simple_repeat 2 150 0 4 1479 272 289 215 14 chr4 117195821 117195834 -38434286 + FAM SINE Alu 138 305 -1 4 1479 654 246 0 0 chr4 117195834 117195960 -38434160 + ID_B1 SINE B4 97 222 -2 4 1479 761 189 14 34 chr4 117196234 117196382 -38433738 - B1_Mur1 SINE Alu 0 149 5 4 1479 1328 203 90 20 chr4 117197485 117197786 -38432334 + MTD LTR MaLR 1 322 -97 4 1479 500 228 30 0 chr4 117198847 117198948 -38431172 - ID_B1 SINE B4 -8 216 113 4 1479 222 259 19 0 chr4 117199337 117199391 -38430729 - MIR SINE MIR -195 67 13 4 1479 291 146 0 0 chr4 117201604 117201659 -38428461 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1479 387 0 0 0 chr4 117201659 117201702 -38428418 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1479 28 0 0 0 chr4 117201812 117201840 -38428280 + AT_rich Low_complexity Low_complexity 1 28 0 4 1479 305 145 0 83 chr4 117201923 117201983 -38428137 + MLT1M LTR MaLR 131 185 -487 4 1479 524 279 30 85 chr4 117202182 117202382 -38427738 - MIRb SINE MIR -26 242 54 4 1479 430 243 40 136 chr4 117202589 117202765 -38427355 + MLT1M LTR MaLR 40 198 -474 4 1479 908 263 14 9 chr4 117202813 117203028 -38427092 + B3 SINE B2 1 216 0 4 1479 892 150 7 33 chr4 117203127 117203279 -38426841 + B1_Mus1 SINE Alu 1 148 0 4 1479 644 191 0 13 chr4 117203279 117203428 -38426692 + GA-rich Low_complexity Low_complexity 3 149 0 4 1479 441 323 52 30 chr4 117203687 117203917 -38426203 - ORR1E LTR MaLR -17 342 108 4 1479 858 211 54 33 chr4 117203921 117204161 -38425959 + RLTR15 LTR ERVK 1 245 -114 4 1479 491 217 0 117 chr4 117204199 117204319 -38425801 - ORR1E LTR MaLR -253 106 1 4 1479 190 349 11 46 chr4 117204321 117204408 -38425712 + L2 LINE L2 2862 2945 -474 4 1479 2303 113 3 0 chr4 117204445 117204763 -38425357 - ORR1A2 LTR MaLR -8 319 1 4 1479 474 65 0 0 chr4 117205459 117205521 -38424599 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 4 1479 260 367 31 22 chr4 117205579 117205802 -38424318 - ERVL-B4-int LTR ERVL -1670 4044 3820 4 1479 778 230 6 12 chr4 117206198 117206361 -38423759 + RSINE1 SINE B4 4 165 0 4 1479 799 200 25 13 chr4 117206424 117206581 -38423539 + B3 SINE B2 2 160 -56 4 1479 264 59 0 0 chr4 117206593 117206627 -38423493 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1479 351 304 67 82 chr4 117206718 117206926 -38423194 - MIR SINE MIR -21 241 37 4 1479 1740 297 69 25 chr4 117207203 117207924 -38422196 - Lx9 LINE L1 -48 7596 6844 4 1479 43 71 0 0 chr4 117207934 117208019 -38422101 + AT_rich Low_complexity Low_complexity 1 85 0 4 1479 190 106 21 21 chr4 117208030 117208078 -38422042 + (TTA)n Simple_repeat Simple_repeat 2 49 0 4 1479 269 191 0 150 chr4 117208086 117208166 -38421954 - RSINE1 SINE B4 0 165 98 4 1479 325 262 92 108 chr4 117210124 117210180 -38419940 + RSINE1 SINE B4 3 48 -117 4 1479 1107 89 0 7 chr4 117210180 117210327 -38419793 - B1_Mus2 SINE Alu -1 146 1 4 1479 325 262 92 108 chr4 117210327 117210390 -38419730 + RSINE1 SINE B4 49 120 -45 4 1479 396 0 0 0 chr4 117210390 117210434 -38419686 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1479 1401 59 43 11 chr4 117210461 117210649 -38419471 + B2_Mm2 SINE B2 1 194 -1 4 1479 197 326 50 20 chr4 117211341 117211441 -38418679 - MIRb SINE MIR -161 107 5 4 1479 330 262 44 53 chr4 117211468 117211581 -38418539 - PB1D10 SINE Alu -4 113 2 4 1479 22 56 0 0 chr4 117212846 117212882 -38417238 + AT_rich Low_complexity Low_complexity 1 36 0 4 1479 704 205 7 58 chr4 117212891 117213046 -38417074 + B1_Mur1 SINE Alu 1 147 -2 4 1479 261 333 52 26 chr4 117213112 117213189 -38416931 + PB1D10 SINE Alu 2 80 -37 4 1479 180 0 0 0 chr4 117213190 117213210 -38416910 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1479 405 262 48 26 chr4 117213285 117213432 -38416688 - MIR SINE MIR -118 150 2 4 1479 327 345 35 5 chr4 117213497 117213695 -38416425 + CR1_Mam LINE CR1 1353 1556 -648 5 1479 992 101 286 0 chr4 117214002 117214170 -38415950 - B3 SINE B2 0 216 1 5 1479 1209 119 119 5 chr4 117214252 117214454 -38415666 + URR1A DNA MER1_type 2 226 0 5 1479 292 248 197 35 chr4 117214454 117214596 -38415524 + MER5A1 DNA MER1_type 2 166 0 5 1479 304 285 22 102 chr4 117214679 117214710 -38415410 - RSINE1 SINE B4 -38 127 2 5 1479 675 160 0 0 chr4 117214710 117214816 -38415304 - B3 SINE B2 -110 106 1 5 1479 533 256 28 35 chr4 117214826 117214968 -38415152 - B1F1 SINE Alu -8 141 1 5 1479 232 272 35 126 chr4 117214968 117215007 -38415113 - MT2B LTR ERVL -448 153 128 5 1479 274 328 57 32 chr4 117215132 117215255 -38414865 + L2b LINE L2 3242 3367 -8 5 1479 429 263 21 50 chr4 117215564 117215704 -38414416 + ID_B1 SINE B4 88 223 -1 5 1479 219 252 155 0 chr4 117217509 117217620 -38412500 - MIRc SINE MIR -93 183 61 5 1479 197 346 26 0 chr4 117217615 117217693 -38412427 - L2c LINE L2 -57 3330 3251 5 1479 1161 289 40 4 chr4 117218282 117218560 -38411560 - B4A SINE B4 -4 288 1 5 1479 260 339 110 34 chr4 117219436 117219604 -38410516 - MIRc SINE MIR -51 211 40 5 1479 646 256 86 45 chr4 117219783 117220004 -38410116 - RMER15 LTR ERVL -2 573 344 5 1479 282 193 0 0 chr4 117220656 117220713 -38409407 + CT-rich Low_complexity Low_complexity 3 59 0 5 1479 881 171 7 0 chr4 117220713 117220859 -38409261 - B1_Mus2 SINE Alu 0 147 1 5 1479 239 305 117 44 chr4 117220943 117221080 -38409040 + LTR16D LTR ERVL 489 635 -16 5 1479 243 170 0 0 chr4 117221093 117221140 -38408980 + CT-rich Low_complexity Low_complexity 1 47 0 5 1479 952 200 12 12 chr4 117221140 117221312 -38408808 - B3 SINE B2 -4 212 41 5 1479 1396 86 37 0 chr4 117221326 117221513 -38408607 - B2_Mm2 SINE B2 0 195 2 5 1479 199 397 39 26 chr4 117221804 117221959 -38408161 - L2a LINE L2 0 3426 3219 5 1479 26 30 0 0 chr4 117222669 117222702 -38407418 + AT_rich Low_complexity Low_complexity 1 33 0 5 1479 860 173 32 25 chr4 117224847 117225036 -38405084 - B3 SINE B2 0 193 4 5 1479 335 255 27 81 chr4 117225843 117225954 -38404166 - BC1_Mm scRNA scRNA -32 120 16 5 1479 256 261 44 44 chr4 117225893 117225961 -38404159 - ID SINE ID -148 76 9 5 1479 1159 43 28 0 chr4 117225974 117226115 -38404005 - B1_Mus2 SINE Alu -1 146 2 5 1479 240 228 0 50 chr4 117226211 117226271 -38403849 - B4 SINE B4 -149 143 87 5 1479 354 273 104 0 chr4 117227180 117227286 -38402834 + PB1D10 SINE Alu 1 119 -1 5 1479 253 274 107 33 chr4 117227806 117227927 -38402193 + MIRb SINE MIR 91 220 -48 5 1479 685 206 76 0 chr4 117227974 117228105 -38402015 - B1_Mur1 SINE Alu 0 149 9 5 1479 924 133 81 32 chr4 117228245 117228431 -38401689 - B2_Mm2 SINE B2 0 195 1 5 1479 389 189 11 0 chr4 117229254 117229344 -38400776 + CT-rich Low_complexity Low_complexity 3 93 0 5 1479 180 105 95 95 chr4 117229895 117229937 -38400183 + MER5A DNA MER1_type 100 141 -48 5 1479 897 60 0 0 chr4 117230254 117230370 -38399750 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 1479 264 336 29 0 chr4 117230454 117230558 -38399562 + MIRb SINE MIR 141 247 -21 5 1479 607 220 0 0 chr4 117231500 117231618 -38398502 - PB1D9 SINE Alu 0 120 3 5 1479 207 0 0 0 chr4 117233055 117233078 -38397042 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1479 391 218 0 27 chr4 117233129 117233216 -38396904 - ID4_ SINE ID -59 93 9 5 1479 583 276 32 18 chr4 117233282 117233503 -38396617 - L1MC4 LINE L1 -128 7914 7691 5 1479 383 288 51 6 chr4 117233552 117233709 -38396411 - L1MC4 LINE L1 -493 7549 7386 5 1479 600 202 96 8 chr4 117233726 117233851 -38396269 - B1F1 SINE Alu -12 137 2 5 1479 685 217 145 10 chr4 117234056 117234256 -38395864 - L1MC4 LINE L1 -1064 6978 6752 5 1479 192 97 0 0 chr4 117234298 117234329 -38395791 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1479 923 211 38 42 chr4 117234865 117235078 -38395042 - B3 SINE B2 0 216 5 5 1479 402 299 176 1 chr4 117235311 117235487 -38394633 - MIR SINE MIR 0 268 59 5 1479 261 0 0 0 chr4 117236407 117236436 -38393684 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1479 1375 273 113 21 chr4 117237780 117238259 -38391861 + MLT1F LTR MaLR 2 524 -24 5 1479 302 266 199 2 chr4 117238264 117238374 -38391746 - B1F1 SINE Alu -21 127 1 5 1479 473 391 29 22 chr4 117239687 117239964 -38390156 + L3 LINE CR1 3093 3371 -1118 5 1479 1494 74 16 0 chr4 117240456 117240646 -38389474 + B2_Mm2 SINE B2 1 193 -2 5 1479 219 88 0 0 chr4 117240652 117240686 -38389434 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1479 851 191 14 0 chr4 117245501 117245648 -38384472 + B1_Mur2 SINE Alu 1 149 0 5 1479 1471 59 32 0 chr4 117245673 117245860 -38384260 + B2_Mm2 SINE B2 2 194 -1 5 1479 299 256 89 0 chr4 117246640 117246730 -38383390 + MER5A1 DNA MER1_type 33 130 -36 5 1479 282 388 8 0 chr4 117246744 117246865 -38383255 - MER5A DNA MER1_type -4 185 64 5 1479 1098 220 9 0 chr4 117246877 117247100 -38383020 + URR1B DNA MER1_type 1 225 0 5 1479 325 250 69 0 chr4 117247250 117247322 -38382798 - ID4_ SINE ID -5 78 2 5 1479 503 307 71 75 chr4 117247954 117248207 -38381913 + MIR SINE MIR 6 262 -6 5 1479 195 114 57 0 chr4 117249928 117249963 -38380157 - L3 LINE CR1 -2285 2204 2168 5 1479 657 0 0 0 chr4 117249974 117250047 -38380073 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1479 334 290 88 25 chr4 117250770 117250929 -38379191 + MIRb SINE MIR 60 228 -40 5 1479 555 275 44 40 chr4 117251889 117252063 -38378057 - B3A SINE B2 -2 196 36 5 1479 300 91 0 0 chr4 117253017 117253061 -38377059 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 5 1479 1219 108 21 11 chr4 117253488 117253675 -38376445 + URR1A DNA MER1_type 38 226 0 5 1479 23 0 0 0 chr4 117254116 117254139 -38375981 + AT_rich Low_complexity Low_complexity 1 23 0 5 1479 396 316 79 7 chr4 117257232 117257372 -38372748 - RSINE1 SINE B4 -14 151 2 5 1479 329 269 62 36 chr4 117257675 117257787 -38372333 + PB1D10 SINE Alu 2 116 -1 5 1479 384 285 32 77 chr4 117257788 117257933 -38372187 + B1F SINE Alu 1 138 -11 5 1479 243 0 0 0 chr4 117257933 117257960 -38372160 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1479 229 259 0 18 chr4 117258894 117258949 -38371171 + L3b LINE CR1 229 282 -200 5 1479 318 254 0 14 chr4 117259452 117259524 -38370596 - ID2 SINE ID -1 82 12 5 1479 198 0 0 0 chr4 117259983 117260005 -38370115 + (CCTG)n Simple_repeat Simple_repeat 3 24 0 5 1479 181 211 18 71 chr4 117263730 117263786 -38366334 - L4 LINE RTE -628 1401 1349 5 1479 458 220 112 15 chr4 117264243 117264377 -38365743 - B1F1 SINE Alu -1 148 2 5 1479 471 273 39 92 chr4 117264559 117264765 -38365355 - MIRb SINE MIR -63 205 11 5 1479 591 261 119 31 chr4 117266112 117266306 -38363814 - MIR SINE MIR -51 211 1 5 1479 983 216 61 28 chr4 117267075 117267289 -38362831 - ID_B1 SINE B4 -1 223 3 5 1479 344 167 14 0 chr4 117268585 117268657 -38361463 + CT-rich Low_complexity Low_complexity 1 73 0 5 1479 897 142 14 21 chr4 117268659 117268803 -38361317 - B1_Mur4 SINE Alu -2 148 6 5 1479 408 155 0 0 chr4 117269708 117269779 -38360341 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1479 500 226 78 0 chr4 117269782 117269884 -38360236 - B1_Mur2 SINE Alu -27 122 13 5 1479 250 348 60 17 chr4 117269793 117269910 -38360210 - ID_B1 SINE B4 -35 189 68 5 1479 31 26 0 0 chr4 117270932 117270970 -38359150 + AT_rich Low_complexity Low_complexity 1 38 0 5 1479 380 245 48 10 chr4 117272031 117272134 -38357986 - MIRb SINE MIR -127 141 35 5 1479 312 305 28 9 chr4 117272424 117272530 -38357590 - PB1D10 SINE Alu -9 108 1 5 1479 291 287 66 47 chr4 117275590 117275696 -38354424 + B1F SINE Alu 12 119 -30 5 1479 333 246 0 0 chr4 117275748 117275813 -38354307 + ID4_ SINE ID 2 66 -17 5 1479 443 284 104 33 chr4 117275895 117276102 -38354018 - L1ME2 LINE L1 -66 6096 5880 5 1479 748 176 34 40 chr4 117276102 117276250 -38353870 - B1_Mus1 SINE Alu 0 148 2 5 1479 396 290 85 123 chr4 117276250 117276360 -38353760 - L1ME2 LINE L1 -253 5909 5791 5 1479 279 71 0 0 chr4 117276455 117276497 -38353623 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1479 322 274 93 8 chr4 117276692 117276810 -38353310 - L2a LINE L2 0 3426 3299 5 1479 573 177 331 31 chr4 117280383 117280546 -38349574 + B3 SINE B2 2 213 -3 5 1479 1044 211 20 10 chr4 117280550 117280701 -38349419 + B3 SINE B2 1 151 -65 5 1479 384 22 0 0 chr4 117280701 117280746 -38349374 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1479 1044 211 20 10 chr4 117280746 117280795 -38349325 + B3 SINE B2 152 203 -13 5 1479 195 42 0 0 chr4 117282686 117282710 -38347410 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1479 1151 57 0 7 chr4 117282713 117282854 -38347266 - B1_Mus1 SINE Alu -6 142 3 5 1479 252 0 0 0 chr4 117283401 117283429 -38346691 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1479 697 159 102 36 chr4 117283494 117283631 -38346489 - B1_Mus2 SINE Alu -1 146 1 5 1479 354 23 0 0 chr4 117285137 117285180 -38344940 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1479 993 32 0 46 chr4 117285180 117285311 -38344809 - B1_Mus1 SINE Alu -8 140 16 5 1479 460 184 7 138 chr4 117285207 117285377 -38344743 - MT2B LTR ERVL -320 264 115 5 1479 258 344 72 21 chr4 117286600 117286740 -38343380 + MIR SINE MIR 40 189 -79 6 1479 1020 249 113 72 chr4 117288137 117288622 -38341498 - RLTR16 LTR ERVK 0 505 1 6 1479 218 371 0 16 chr4 117290125 117290214 -38339906 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 6 1479 3324 48 8 8 chr4 117290214 117290614 -38339506 + MTB LTR MaLR 1 400 0 6 1479 218 371 0 16 chr4 117290614 117290650 -38339470 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 6 1479 260 303 66 0 chr4 117290681 117290757 -38339363 - MIRm SINE MIR -3 273 193 6 1479 199 354 42 33 chr4 117290848 117290968 -38339152 - L2a LINE L2 -317 3109 2989 6 1479 188 340 78 20 chr4 117290956 117291058 -38339062 + MIRm SINE MIR 169 276 0 6 1479 213 287 47 47 chr4 117291072 117291178 -38338942 - L2a LINE L2 -468 2951 2846 6 1479 718 208 34 20 chr4 117291238 117291385 -38338735 + B1F SINE Alu 1 149 0 6 1479 647 111 20 0 chr4 117291501 117291600 -38338520 + B1_Mus2 SINE Alu 34 134 -13 6 1479 258 32 0 0 chr4 117291620 117291651 -38338469 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1479 643 252 19 0 chr4 117291651 117291810 -38338310 - Tigger9b DNA MER2_type -188 436 275 6 1479 537 248 28 0 chr4 117291848 117291957 -38338163 - PB1D9 SINE Alu -7 113 2 6 1479 458 285 45 15 chr4 117291959 117292091 -38338029 - Tigger9b DNA MER2_type -488 136 1 6 1479 588 309 69 52 chr4 117292541 117292897 -38337223 - MLT1A0 LTR MaLR 0 408 8 6 1479 273 231 74 42 chr4 117292916 117293011 -38337109 + Charlie5 DNA MER1_type 22 119 -2505 6 1479 463 275 77 67 chr4 117292984 117293283 -38336837 + Charlie5 DNA MER1_type 2231 2533 -91 6 1479 1134 167 28 5 chr4 117293283 117293494 -38336626 - B3 SINE B2 0 216 1 6 1479 463 275 77 67 chr4 117293494 117293584 -38336536 + Charlie5 DNA MER1_type 2534 2624 0 6 1479 231 217 0 0 chr4 117293741 117293801 -38336319 + GA-rich Low_complexity Low_complexity 1 60 0 6 1479 477 276 137 39 chr4 117294064 117294257 -38335863 - MTD-int LTR MaLR -1029 229 17 6 1479 1338 234 142 11 chr4 117294257 117294615 -38335505 - MTD LTR MaLR -2 417 13 6 1479 459 244 8 42 chr4 117295175 117295295 -38334825 + PB1D9 SINE Alu 5 120 0 6 1479 685 270 53 62 chr4 117295297 117295522 -38334598 + ID_B1 SINE B4 2 224 0 6 1479 392 312 40 28 chr4 117298745 117298915 -38331205 + MIR SINE MIR 37 202 -60 6 1479 269 297 38 58 chr4 117299115 117299243 -38330877 + MIRc SINE MIR 33 154 -122 6 1479 235 287 83 9 chr4 117299310 117299419 -38330701 - MIR SINE MIR -128 134 18 6 1479 1422 55 55 0 chr4 117300511 117300694 -38329426 - B2_Mm2 SINE B2 -1 194 2 6 1479 2183 164 61 5 chr4 117301503 117301894 -38328226 - MTC LTR MaLR -8 413 1 6 1479 234 229 56 14 chr4 117301939 117302010 -38328110 + RLTR13D6 LTR ERVK 303 376 -526 6 1479 224 338 64 13 chr4 117302545 117302623 -38327497 - L2b LINE L2 -50 3325 3244 6 1479 233 109 22 0 chr4 117303928 117303974 -38326146 + (TCCG)n Simple_repeat Simple_repeat 2 48 0 6 1479 543 314 64 45 chr4 117304064 117304284 -38325836 + B4A SINE B4 5 228 -64 6 1479 393 22 0 0 chr4 117304360 117304406 -38325714 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1479 352 197 0 16 chr4 117304780 117304842 -38325278 - B3 SINE B2 -155 61 1 6 1479 352 307 104 66 chr4 117304907 117305273 -38324847 - L1MB8 LINE L1 -30 6148 5769 6 1479 437 62 0 30 chr4 117305304 117305370 -38324750 + (TTTTC)n Simple_repeat Simple_repeat 4 67 0 6 1479 755 233 98 0 chr4 117305392 117305555 -38324565 - B3A SINE B2 -18 180 2 6 1479 428 252 99 30 chr4 117305566 117305697 -38324423 - B1F1 SINE Alu -8 141 2 6 1479 244 244 83 12 chr4 117305697 117305796 -38324324 - L1M4 LINE L1 -400 5780 5676 6 1479 303 146 0 0 chr4 117305799 117305854 -38324266 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1479 477 0 0 0 chr4 117305854 117305907 -38324213 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1479 185 259 91 18 chr4 117306876 117306931 -38323189 + L4 LINE RTE 315 373 -1656 6 1480 205 245 18 89 chr4 117309713 117309825 -38320295 + CT-rich Low_complexity Low_complexity 2 105 0 6 1480 375 162 15 0 chr4 117310511 117310579 -38319541 - BC1_Mm scRNA scRNA -56 96 28 6 1480 620 229 110 7 chr4 117310923 117311077 -38319043 - ID_B1 SINE B4 -53 171 2 6 1480 803 160 0 48 chr4 117311718 117312053 -38318067 + CT-rich Low_complexity Low_complexity 1 318 0 6 1480 834 189 32 18 chr4 117315274 117315458 -38314662 + B3 SINE B2 1 193 -2 6 1480 210 105 0 0 chr4 117315474 117315512 -38314608 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1480 294 348 87 0 chr4 117315513 117315628 -38314492 - MIR SINE MIR -26 236 112 6 1480 492 176 0 0 chr4 117317063 117317165 -38312955 + CT-rich Low_complexity Low_complexity 2 103 0 6 1480 280 220 100 33 chr4 117320837 117320957 -38309163 + MIRm SINE MIR 56 186 -90 6 1480 207 0 0 0 chr4 117321199 117321222 -38308898 + (CG)n Simple_repeat Simple_repeat 2 24 0 6 1480 369 0 0 0 chr4 117321222 117321262 -38308858 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1480 204 174 0 80 chr4 117322142 117322217 -38307903 + GA-rich Low_complexity Low_complexity 2 70 0 6 1480 204 97 0 0 chr4 117323669 117323700 -38306420 + (G)n Simple_repeat Simple_repeat 1 31 0 6 1480 202 322 191 12 chr4 117325575 117325748 -38304372 - MIRb SINE MIR -64 204 1 6 1480 672 91 26 3 chr4 117325792 117325905 -38304215 + B2_Mm2 SINE B2 2 192 -1 6 1480 280 190 33 33 chr4 117325948 117326008 -38304112 + MT2B2 LTR ERVL 195 254 -330 6 1480 516 146 0 73 chr4 117325957 117326053 -38304067 + B1_Mus2 SINE Alu 49 137 -10 6 1480 216 0 0 0 chr4 117326053 117326077 -38304043 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1480 352 227 13 51 chr4 117326082 117326161 -38303959 - B4 SINE B4 -216 76 1 6 1480 478 200 12 0 chr4 117326465 117326545 -38303575 + ID2 SINE ID 3 83 0 6 1480 231 146 0 0 chr4 117327956 117327997 -38302123 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1480 225 0 0 0 chr4 117328660 117328685 -38301435 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1480 1662 42 0 0 chr4 117328685 117328878 -38301242 - B2_Mm1a SINE B2 0 193 1 6 1480 182 316 150 12 chr4 117329156 117329236 -38300884 - MIRb SINE MIR -130 138 48 6 1480 1085 162 85 33 chr4 117330979 117331190 -38298930 + URR1A DNA MER1_type 5 226 0 6 1480 1384 69 27 0 chr4 117332943 117333131 -38296989 - B2_Mm2 SINE B2 -2 193 1 6 1480 569 284 64 92 chr4 117333252 117333502 -38296618 + L2c LINE L2 3082 3318 -69 6 1480 234 0 0 0 chr4 117333502 117333528 -38296592 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1480 569 284 64 92 chr4 117333528 117333591 -38296529 + L2c LINE L2 3319 3386 -1 6 1480 192 250 52 35 chr4 117334178 117334236 -38295884 - MIRm SINE MIR -195 81 23 6 1480 255 303 124 0 chr4 117334395 117334484 -38295636 - PB1D10 SINE Alu -16 101 2 6 1480 271 260 54 14 chr4 117334416 117334490 -38295630 - ID_B1 SINE B4 -70 154 78 6 1480 568 242 15 29 chr4 117334540 117334676 -38295444 - B1_Mur3 SINE Alu -11 138 5 6 1480 642 270 50 45 chr4 117334757 117334955 -38295165 - ID_B1 SINE B4 -25 199 1 6 1480 280 288 92 21 chr4 117334981 117335123 -38294997 - L1MC4a LINE L1 -80 7802 7651 6 1480 595 214 144 36 chr4 117335460 117335654 -38294466 + B3 SINE B2 2 216 0 6 1480 612 59 0 0 chr4 117336613 117336698 -38293422 + (TCC)n Simple_repeat Simple_repeat 3 87 0 6 1480 289 331 53 69 chr4 117339125 117339313 -38290807 - MIR SINE MIR -38 224 40 6 1480 910 191 0 13 chr4 117339393 117339542 -38290578 + B1_Mur4 SINE Alu 1 147 -3 6 1480 1218 34 14 14 chr4 117339944 117340092 -38290028 + B1_Mus1 SINE Alu 1 148 0 6 1480 735 187 0 17 chr4 117340169 117340343 -38289777 + CT-rich Low_complexity Low_complexity 1 171 0 6 1480 311 163 0 0 chr4 117340358 117340410 -38289710 - B1_Mur2 SINE Alu -9 138 89 6 1480 1511 59 21 0 chr4 117340537 117340723 -38289397 + B2_Mm1a SINE B2 2 191 -2 6 1480 338 294 20 27 chr4 117340814 117340826 -38289294 + ID_B1 SINE B4 81 143 -149 6 1480 562 188 10 0 chr4 117340826 117340927 -38289193 + PB1D9 SINE Alu 13 114 -6 6 1480 955 209 82 0 chr4 117340937 117341133 -38288987 + B3 SINE B2 5 216 0 6 1480 613 292 127 6 chr4 117341224 117341437 -38288683 - B4A SINE B4 -29 263 2 6 1480 455 285 65 14 chr4 117341660 117341799 -38288321 - RSINE1 SINE B4 -8 157 12 6 1480 605 129 267 0 chr4 117341818 117341934 -38288186 - B1_Mus1 SINE Alu -1 147 1 6 1480 349 224 13 13 chr4 117343143 117343220 -38286900 + RSINE1 SINE B4 66 142 -23 6 1480 274 262 81 70 chr4 117343202 117343288 -38286832 + ID_B1 SINE B4 99 185 -39 6 1480 238 301 81 61 chr4 117343288 117343300 -38286820 + B1F2 SINE Alu 18 117 -32 6 1480 323 309 12 0 chr4 117343302 117343383 -38286737 + ID SINE ID 1 82 -142 6 1480 226 330 54 45 chr4 117343383 117343399 -38286721 + BC1_Mm scRNA scRNA 1 98 -54 6 1480 553 269 30 8 chr4 117343399 117343530 -38286590 + RSINE1 SINE B4 1 134 -31 6 1480 350 245 222 10 chr4 117343562 117343661 -38286459 + PB1D9 SINE Alu 1 120 0 6 1480 679 181 81 37 chr4 117343857 117344018 -38286102 - URR1A DNA MER1_type 0 226 59 6 1480 609 99 348 0 chr4 117345364 117345505 -38284615 - URR1B DNA MER1_type 0 225 36 6 1480 277 245 70 70 chr4 117345407 117345521 -38284599 + CYRA11_Mm Unknown Y-chromosome 256 369 -248 6 1480 233 279 22 34 chr4 117345551 117345640 -38284480 - ORR1D-int LTR MaLR -48 1322 1235 6 1480 198 0 0 0 chr4 117345906 117345928 -38284192 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1480 467 292 27 14 chr4 117350079 117350225 -38279895 - B1F1 SINE Alu 0 149 2 6 1480 573 288 48 24 chr4 117350780 117350947 -38279173 - B3A SINE B2 -26 172 2 7 1480 382 299 0 86 chr4 117350955 117350970 -38279150 - PB1D10 SINE Alu 0 117 1 7 1480 573 248 26 0 chr4 117350970 117351083 -38279037 - ID_B1 SINE B4 -27 197 82 7 1480 522 212 68 0 chr4 117351366 117351498 -38278622 + B3 SINE B2 67 207 -9 7 1480 494 194 20 0 chr4 117352093 117352191 -38277929 - RSINE1 SINE B4 -38 127 28 7 1480 228 150 0 0 chr4 117352954 117352994 -38277126 + L2a LINE L2 3128 3167 -259 7 1480 190 243 97 123 chr4 117354356 117354511 -38275609 + L2b LINE L2 3053 3203 -172 7 1480 225 265 118 83 chr4 117355080 117355224 -38274896 + MIRb SINE MIR 86 234 -34 7 1480 660 87 0 0 chr4 117355373 117355465 -38274655 + (TC)n Simple_repeat Simple_repeat 2 93 0 7 1480 436 138 74 12 chr4 117355500 117355581 -38274539 - B1F1 SINE Alu -63 86 1 7 1480 252 239 21 74 chr4 117355581 117355595 -38274525 - MT2B2 LTR ERVL -343 241 152 7 1480 252 0 0 0 chr4 117355672 117355700 -38274420 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1480 2179 161 62 3 chr4 117355705 117356073 -38274047 + MTC LTR MaLR 18 407 -14 7 1480 1254 93 23 0 chr4 117356275 117356447 -38273673 + B2_Mm2 SINE B2 1 176 -19 7 1480 273 119 0 0 chr4 117356448 117356490 -38273630 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 7 1480 690 239 11 6 chr4 117356498 117356675 -38273445 + L1M5 LINE L1 5470 5647 -526 7 1480 597 214 0 0 chr4 117356747 117356850 -38273270 + B3 SINE B2 2 104 -112 7 1480 440 200 0 34 chr4 117356853 117356933 -38273187 + B1_Mur3 SINE Alu 2 78 -71 7 1480 213 300 0 0 chr4 117356933 117356983 -38273137 + B1F SINE Alu 1 50 -99 7 1480 390 282 51 126 chr4 117356941 117356962 -38273158 + B4A SINE B4 18 200 -92 7 1480 294 29 0 0 chr4 117357010 117357045 -38273075 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1480 432 262 57 8 chr4 117357045 117357168 -38272952 + B1F SINE Alu 13 141 -8 7 1480 23 0 0 0 chr4 117357255 117357278 -38272842 + AT_rich Low_complexity Low_complexity 1 23 0 7 1480 701 248 0 10 chr4 117357697 117357905 -38272215 + L1M5 LINE L1 4231 4436 -1710 7 1480 297 254 214 51 chr4 117358381 117358559 -38271561 - ID_B1 SINE B4 -17 207 1 7 1480 216 0 0 0 chr4 117358670 117358694 -38271426 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1480 990 150 0 7 chr4 117358709 117358857 -38271263 - B1_Mus1 SINE Alu -1 147 1 7 1480 1002 59 27 93 chr4 117359373 117359523 -38270597 + B1_Mus1 SINE Alu 1 140 -8 7 1480 628 209 139 0 chr4 117359660 117359789 -38270331 + B1_Mur2 SINE Alu 3 149 0 7 1480 22 0 0 0 chr4 117360001 117360023 -38270097 + AT_rich Low_complexity Low_complexity 1 22 0 7 1480 514 273 22 15 chr4 117360082 117360216 -38269904 - LTR84b LTR ERVL -625 136 2 7 1480 796 273 151 20 chr4 117360246 117360538 -38269582 - MER21B LTR ERV1 -77 786 457 7 1480 531 239 71 14 chr4 117360530 117360670 -38269450 + ID_B1 SINE B4 77 224 0 7 1480 182 65 0 61 chr4 117360759 117360792 -38269328 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1480 1047 83 42 0 chr4 117360801 117360945 -38269175 - B1_Mur4 SINE Alu 0 150 1 7 1480 1269 48 0 0 chr4 117360962 117361109 -38269011 + B1_Mus2 SINE Alu 1 147 0 7 1480 189 0 0 0 chr4 117361134 117361155 -38268965 + (CAG)n Simple_repeat Simple_repeat 2 22 0 7 1480 782 225 71 30 chr4 117361316 117361513 -38268607 - B3 SINE B2 -11 205 1 7 1480 532 293 63 0 chr4 117361557 117361748 -38268372 - B3 SINE B2 -13 203 1 7 1480 249 319 14 14 chr4 117361826 117361899 -38268221 - ID4_ SINE ID -4 79 7 7 1480 473 121 12 0 chr4 117361899 117361982 -38268138 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 7 1480 3314 16 0 0 chr4 117362027 117362394 -38267726 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1480 54042 22 15 2 chr4 117362394 117368785 -38261335 - IAPEz-int LTR ERVK 0 6481 8 7 1480 3093 17 43 0 chr4 117368785 117369137 -38260983 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1480 607 250 0 0 chr4 117369138 117369258 -38260862 - B1_Mur3 SINE Alu -29 120 1 7 1480 1133 111 0 11 chr4 117369280 117369462 -38260658 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 7 1480 520 176 13 33 chr4 117369501 117369654 -38260466 + CT-rich Low_complexity Low_complexity 4 153 0 7 1480 763 203 14 0 chr4 117369662 117369805 -38260315 - B1_Mur3 SINE Alu 0 149 5 7 1480 430 235 154 80 chr4 117370049 117370211 -38259909 + B3A SINE B2 2 175 -20 7 1480 356 333 0 0 chr4 117370257 117370353 -38259767 + PB1 SINE Alu 32 127 0 7 1480 1049 146 18 0 chr4 117370353 117370524 -38259596 + B2_Mm1t SINE B2 6 179 -14 7 1480 390 91 358 0 chr4 117370590 117370699 -38259421 + B2_Mm2 SINE B2 47 194 -1 7 1480 813 170 7 20 chr4 117370704 117370854 -38259266 + B1_Mur4 SINE Alu 2 149 -1 7 1480 224 200 0 18 chr4 117370882 117370938 -38259182 + (TATG)n Simple_repeat Simple_repeat 4 58 0 7 1480 249 304 0 0 chr4 117370950 117371019 -38259101 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1480 211 176 0 0 chr4 117370994 117371028 -38259092 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1480 315 203 0 17 chr4 117371208 117371268 -38258852 - B3 SINE B2 -57 159 101 7 1480 387 0 0 0 chr4 117371268 117371311 -38258809 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1480 3588 108 34 67 chr4 117371312 117371937 -38258183 + RLTR6_Mm LTR ERV1 1 604 -50 7 1480 6381 21 46 17 chr4 117371938 117372744 -38257376 + RLTR6-int LTR ERV1 1 829 -6949 7 1480 400 181 108 49 chr4 117372738 117372904 -38257216 + MMVL30-int LTR ERV1 280 533 -7023 7 1480 5227 101 27 25 chr4 117373230 117374220 -38255900 + MMVL30-int LTR ERV1 772 1610 -2088 7 1480 932 18 0 0 chr4 117374216 117374328 -38255792 + MMVL30-int LTR ERV1 3587 3698 0 7 1480 3440 108 35 69 chr4 117374328 117374933 -38255187 + RLTR6_Mm LTR ERV1 1 584 -70 7 1480 277 295 56 19 chr4 117374925 117374946 -38255174 + B1_Mus1 SINE Alu 22 132 -16 7 1480 354 309 0 23 chr4 117374946 117375032 -38255088 + ID_B1 SINE B4 125 208 -16 7 1480 1261 41 0 0 chr4 117375136 117375283 -38254837 + B1_Mm SINE Alu 1 147 0 7 1480 180 0 0 0 chr4 117375283 117375303 -38254817 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1480 311 315 86 104 chr4 117375322 117375602 -38254518 + MER57D LTR ERV1 132 406 -5 7 1480 1623 230 75 0 chr4 117375960 117376321 -38253799 - MTD LTR MaLR -14 405 18 7 1480 993 221 130 32 chr4 117376638 117376923 -38253197 - ORR1D2 LTR MaLR -57 313 1 7 1480 613 227 182 0 chr4 117377031 117377207 -38252913 - ID_B1 SINE B4 0 224 17 7 1480 395 316 36 92 chr4 117377232 117377483 -38252637 + MER57A-int LTR ERV1 4498 4734 -1453 7 1480 198 0 0 0 chr4 117378296 117378318 -38251802 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 7 1480 210 143 0 0 chr4 117378602 117378637 -38251483 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1480 718 128 37 0 chr4 117378638 117378747 -38251373 - B1_Mur2 SINE Alu -1 148 36 7 1480 489 234 54 9 chr4 117378772 117378884 -38251236 - ID_B1 SINE B4 0 224 108 7 1480 897 97 46 32 chr4 117378890 117379134 -38250986 - B2_Mm1t SINE B2 0 216 1 7 1480 354 292 94 7 chr4 117379134 117379239 -38250881 - ID_B1 SINE B4 -100 124 8 7 1480 1228 132 21 0 chr4 117379241 117379430 -38250690 - B2_Mm1a SINE B2 0 193 1 7 1480 675 241 22 65 chr4 117381242 117381473 -38248647 + URR1A DNA MER1_type 2 222 -4 7 1480 471 234 61 30 chr4 117383066 117383198 -38246922 + B1_Mur1 SINE Alu 14 149 0 7 1480 329 272 92 14 chr4 117383298 117383460 -38246660 - MLT1B LTR MaLR -21 369 210 7 1480 297 51 0 0 chr4 117383476 117383515 -38246605 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1480 234 248 25 139 chr4 117383559 117383681 -38246439 - ID_B1 SINE B4 0 224 117 7 1480 278 248 117 58 chr4 117383573 117383585 -38246535 - MT2B LTR ERVL -303 298 261 7 1480 529 156 42 0 chr4 117383585 117383681 -38246439 - B1_Mur2 SINE Alu -14 135 36 7 1480 278 248 117 58 chr4 117383681 117383710 -38246410 - MT2B LTR ERVL -303 260 154 7 1480 237 268 155 0 chr4 117383717 117383788 -38246332 - MLT1B LTR MaLR -266 124 43 7 1480 207 0 0 0 chr4 117383899 117383922 -38246198 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1480 922 244 27 31 chr4 117383967 117384225 -38245895 - Lx5 LINE L1 -4 7046 6790 7 1480 804 263 6 6 chr4 117384455 117384635 -38245485 + B3A SINE B2 2 181 -17 7 1480 315 193 32 64 chr4 117384651 117384745 -38245375 + PB1D10 SINE Alu 27 117 0 7 1480 187 330 80 35 chr4 117385076 117385189 -38244931 + L3 LINE CR1 755 872 -3617 7 1480 1279 113 16 0 chr4 117385242 117385428 -38244692 - B2_Mm2 SINE B2 -5 190 2 7 1480 679 185 15 0 chr4 117385433 117385563 -38244557 - B1_Mur4 SINE Alu 0 150 19 7 1480 782 177 14 7 chr4 117386960 117387108 -38243012 - B1_Mur3 SINE Alu 0 149 1 7 1480 303 281 81 50 chr4 117387532 117387753 -38242367 + L1MEg LINE L1 2003 2230 -4154 7 1480 905 72 0 0 chr4 117387811 117387922 -38242198 + B2_Mm2 SINE B2 3 113 -82 7 1480 441 0 0 0 chr4 117387928 117387977 -38242143 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1480 1079 92 0 0 chr4 117387981 117388122 -38241998 - B1_Mus1 SINE Alu -6 142 2 7 1480 513 206 105 14 chr4 117388125 117388268 -38241852 - URR1A DNA MER1_type -70 156 1 7 1480 371 205 139 109 chr4 117388784 117388843 -38241277 + B1F2 SINE Alu 7 65 -84 7 1480 1189 106 45 0 chr4 117388843 117389022 -38241098 - B2_Mm2 SINE B2 -8 187 1 7 1480 371 205 139 109 chr4 117389022 117389099 -38241021 + B1F2 SINE Alu 66 147 -2 7 1480 386 292 78 35 chr4 117389119 117389261 -38240859 + B1_Mur1 SINE Alu 1 148 -1 7 1480 605 225 104 37 chr4 117389280 117389414 -38240706 - B1_Mur3 SINE Alu -5 144 2 7 1480 241 111 83 0 chr4 117389392 117389428 -38240692 + MLT1J1 LTR MaLR 142 180 -264 7 1480 21 57 0 0 chr4 117389595 117389630 -38240490 + AT_rich Low_complexity Low_complexity 1 35 0 7 1480 241 290 116 0 chr4 117389653 117389722 -38240398 - B3A SINE B2 -38 160 84 8 1480 780 166 26 40 chr4 117389845 117389996 -38240124 - B1_Mur4 SINE Alu -1 149 1 8 1480 756 158 28 35 chr4 117390098 117390242 -38239878 + B1_Mus1 SINE Alu 6 148 0 8 1480 314 217 14 28 chr4 117390247 117390318 -38239802 + L1MEg LINE L1 2245 2314 -4164 7 1480 1146 112 16 16 chr4 117390352 117390542 -38239578 + B2_Mm2 SINE B2 1 190 -5 8 1480 689 182 41 20 chr4 117390558 117390704 -38239416 + B1_Mur4 SINE Alu 1 149 -1 8 1480 654 192 13 52 chr4 117390782 117390936 -38239184 - B1_Mur3 SINE Alu -1 148 1 8 1480 215 205 0 0 chr4 117390946 117390985 -38239135 - PB1D9 SINE Alu -8 112 74 8 1480 290 197 0 53 chr4 117390988 117391063 -38239057 - L1MB8 LINE L1 -160 6018 5948 8 1480 527 161 76 51 chr4 117391259 117391377 -38238743 - B1_Mur2 SINE Alu -27 122 2 8 1480 212 221 36 72 chr4 117391668 117391751 -38238369 - ID4 SINE ID -1 82 3 8 1480 519 226 96 15 chr4 117391774 117391909 -38238211 - B1_Mur4 SINE Alu -2 148 3 8 1480 270 0 0 0 chr4 117391910 117391940 -38238180 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 8 1480 1263 46 0 0 chr4 117391941 117392094 -38238026 - B2_Mm2 SINE B2 -41 154 2 8 1480 209 108 27 0 chr4 117392138 117392175 -38237945 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1480 252 0 0 0 chr4 117392187 117392215 -38237905 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1480 483 211 54 8 chr4 117392215 117392344 -38237776 - B1_Mus1 SINE Alu -13 135 1 8 1480 475 231 183 8 chr4 117393016 117393147 -38236973 - RSINE1 SINE B4 -10 155 2 8 1480 371 233 86 43 chr4 117393169 117393308 -38236812 - L1MC LINE L1 -2907 3239 3095 8 1480 9806 72 30 26 chr4 117393308 117394823 -38235297 - Lx3_Mus LINE L1 0 7009 5479 8 1480 3090 70 2 0 chr4 117394821 117395237 -38234883 - Lx3_Mus LINE L1 -3069 2817 2401 8 1480 3108 147 82 35 chr4 117395231 117396394 -38233726 - Lx3_Mus LINE L1 -4381 1505 3 8 1480 369 0 0 0 chr4 117399770 117399811 -38230309 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1480 603 205 89 8 chr4 117399837 117399960 -38230160 - B1_Mur4 SINE Alu -16 134 2 8 1480 271 289 65 113 chr4 117400033 117400201 -38229919 + B4A SINE B4 10 169 -123 8 1480 252 59 0 0 chr4 117402113 117402147 -38227973 + (G)n Simple_repeat Simple_repeat 1 34 0 8 1480 1613 218 112 28 chr4 117402201 117402536 -38227584 + RLTR16 LTR ERVK 34 401 -104 8 1480 459 0 0 0 chr4 117402536 117402587 -38227533 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1480 1613 218 112 28 chr4 117402587 117402681 -38227439 + RLTR16 LTR ERVK 402 498 -7 8 1480 447 235 41 16 chr4 117402842 117402963 -38227157 + Lx4B LINE L1 6707 6830 -228 8 1480 408 253 21 0 chr4 117402967 117403062 -38227058 + RMER1C Other Other 1091 1187 -155 8 1480 499 186 35 0 chr4 117403260 117403346 -38226774 - B1_Mus2 SINE Alu -18 129 41 8 1480 225 299 158 36 chr4 117403288 117403427 -38226693 - RLTR25B LTR ERVK -530 498 343 8 1480 3672 184 68 41 chr4 117403761 117404613 -38225507 + RLTR14-int LTR ERV1 4443 5317 0 8 1480 297 68 0 0 chr4 117404618 117404662 -38225458 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1480 443 315 46 20 chr4 117404772 117404924 -38225196 + B3A SINE B2 26 181 -17 8 1480 672 221 66 7 chr4 117404955 117405092 -38225028 + B1_Mus1 SINE Alu 2 146 -2 8 1480 226 143 0 20 chr4 117405103 117405153 -38224967 + L1ME2z LINE L1 6265 6313 -131 8 1480 460 281 102 7 chr4 117405216 117405363 -38224757 + MER70B LTR ERVL 230 390 -188 8 1480 373 266 119 75 chr4 117405420 117405554 -38224566 + ID_B1 SINE B4 26 165 -59 8 1480 707 121 143 16 chr4 117406197 117406323 -38223797 + B1_Mur3 SINE Alu 6 147 -2 8 1480 207 88 0 0 chr4 117406538 117406572 -38223548 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 8 1480 996 74 65 14 chr4 117406572 117406710 -38223410 - B1_Mus2 SINE Alu 0 147 3 8 1480 4607 37 0 5 chr4 117406714 117407281 -38222839 - ORR1A1-int LTR MaLR -1228 564 1 8 1480 3887 52 19 0 chr4 117407373 117407839 -38222281 - MT2C_Mm LTR ERVL 0 475 1 8 1480 769 127 39 23 chr4 117407871 117408000 -38222120 + RLTR19 LTR ERVK 72 202 -297 8 1480 315 245 117 0 chr4 117408038 117408132 -38221988 + PB1D10 SINE Alu 5 109 -8 8 1480 205 242 20 20 chr4 117408165 117408266 -38221854 + (TTA)n Simple_repeat Simple_repeat 1 101 0 8 1480 584 164 106 0 chr4 117408715 117408819 -38221301 - B1_Mur3 SINE Alu -7 142 28 8 1480 681 243 97 5 chr4 117408884 117409070 -38221050 - B3 SINE B2 -10 206 4 8 1480 262 274 25 88 chr4 117409310 117409390 -38220730 + ID_B1 SINE B4 84 158 -66 8 1480 262 241 61 176 chr4 117409390 117409440 -38220680 + PB1D10 SINE Alu 3 117 0 8 1480 447 129 165 0 chr4 117410364 117410449 -38219671 + B3 SINE B2 108 206 -10 8 1480 1736 16 0 0 chr4 117410467 117410660 -38219460 + B2_Mm1a SINE B2 1 193 0 8 1480 1089 145 8 39 chr4 117410695 117410908 -38219212 + B2_Mm2 SINE B2 1 216 0 8 1480 815 35 211 0 chr4 117411022 117411136 -38218984 + B1_Mur3 SINE Alu 3 140 -9 8 1480 216 0 0 0 chr4 117411523 117411547 -38218573 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1480 408 284 0 0 chr4 117411741 117411843 -38218277 - PB1D10 SINE Alu -1 116 15 8 1480 225 205 79 124 chr4 117411766 117411855 -38218265 - MT2B LTR ERVL -354 247 163 8 1480 698 158 98 71 chr4 117412033 117412217 -38217903 + B2_Mm2 SINE B2 1 189 -6 8 1480 233 274 0 61 chr4 117412280 117412346 -38217774 + B1F1 SINE Alu 2 63 -86 8 1480 430 242 63 53 chr4 117412301 117412481 -38217639 - ID_B1 SINE B4 -87 205 17 8 1480 378 61 0 0 chr4 117413203 117413252 -38216868 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1480 924 203 18 78 chr4 117413340 117413559 -38216561 + B3 SINE B2 1 206 -10 8 1480 27 0 0 0 chr4 117413599 117413626 -38216494 + AT_rich Low_complexity Low_complexity 1 27 0 8 1480 2135 130 22 4 chr4 117413626 117413972 -38216148 + ORR1A2 LTR MaLR 5 374 0 8 1480 6145 180 85 46 chr4 117413972 117415454 -38214666 + ORR1A2-int LTR MaLR 1 1540 -423 8 1480 1908 37 4 0 chr4 117415454 117415695 -38214425 - LTRIS_Mus LTR ERV1 0 587 346 8 1480 2523 91 53 8 chr4 117415944 117416319 -38213801 - LTRIS_Mus LTR ERV1 -195 392 1 8 1480 2981 104 16 7 chr4 117416319 117416742 -38213378 + ORR1A2-int LTR MaLR 1537 1963 0 8 1480 2078 113 46 3 chr4 117416746 117417048 -38213072 + ORR1A2 LTR MaLR 5 319 -8 8 1480 486 0 0 0 chr4 117417177 117417231 -38212889 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 8 1480 452 188 29 59 chr4 117417231 117417333 -38212787 - ID_B1 SINE B4 -10 214 116 8 1480 243 194 82 14 chr4 117417428 117417501 -38212619 + ID4_ SINE ID 2 79 -4 8 1480 474 261 107 16 chr4 117417534 117417655 -38212465 - B3 SINE B2 -84 132 1 8 1480 600 111 0 0 chr4 117418558 117418639 -38211481 - B1_Mus2 SINE Alu -10 137 57 8 1480 272 258 0 101 chr4 117418639 117418657 -38211463 - ID_B1 SINE B4 -10 214 126 8 1480 276 270 74 90 chr4 117418677 117418799 -38211321 - PB1D9 SINE Alu 0 120 1 8 1480 361 205 35 46 chr4 117418799 117418865 -38211255 - ID_B1 SINE B4 -6 218 154 8 1480 262 184 0 160 chr4 117418865 117418959 -38211161 + B1_Mus1 SINE Alu 1 80 -68 8 1480 248 190 121 48 chr4 117418898 117418981 -38211139 + B4 SINE B4 102 190 -102 8 1480 612 205 27 0 chr4 117419402 117419514 -38210606 + PB1D10 SINE Alu 3 117 0 8 1480 530 235 197 48 chr4 117419530 117419718 -38210402 + ID_B1 SINE B4 1 216 -8 8 1480 329 279 89 8 chr4 117419730 117419853 -38210267 + L1MEc LINE L1 504 636 -5764 8 1480 252 0 0 0 chr4 117419857 117419885 -38210235 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8 1480 540 191 62 56 chr4 117419933 117420077 -38210043 + B1F1 SINE Alu 5 149 0 8 1480 928 108 46 0 chr4 117420175 117420305 -38209815 + B1_Mus2 SINE Alu 1 136 -11 8 1480 208 0 30 30 chr4 117420305 117420338 -38209782 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 8 1480 2270 99 3 12 chr4 117420351 117420688 -38209432 - L1_Mm LINE L1 -1535 4348 4015 8 1480 5612 72 0 2 chr4 117420671 117421483 -38208637 + L1_Mus2 LINE L1 5124 5932 -634 8 1480 2063 186 106 84 chr4 117421483 117422000 -38208120 + RLTR1D LTR ERV1 1 545 -60 8 1480 1305 111 11 0 chr4 117422000 117422190 -38207930 - B2_Mm1t SINE B2 0 193 2 8 1480 2063 186 106 84 chr4 117422190 117422264 -38207856 + RLTR1D LTR ERV1 546 605 0 8 1480 1548 165 25 0 chr4 117422280 117422559 -38207561 + MMVL30-int LTR ERV1 15 300 -7256 8 1480 533 256 0 15 chr4 117422597 117422732 -38207388 + MMVL30-int LTR ERV1 401 533 -7023 8 1480 201 132 0 0 chr4 117422769 117422807 -38207313 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 8 1480 4828 95 30 6 chr4 117423221 117423887 -38206233 + MMVL30-int LTR ERV1 772 1453 -2245 8 1480 607 140 64 131 chr4 117423971 117424252 -38205868 + MMVL30-int LTR ERV1 960 1511 -2187 8 1480 7889 85 31 9 chr4 117424521 117426600 -38203520 + MMVL30-int LTR ERV1 1496 3621 -77 8 1480 505 142 7 64 chr4 117426591 117426733 -38203387 + MMVL30-int LTR ERV1 3629 3698 0 8 1480 3802 74 0 4 chr4 117426733 117427222 -38202898 + RLTR1C LTR ERV1 1 487 -16 8 1480 4327 57 125 0 chr4 117427238 117427829 -38202291 + L1_Mus2 LINE L1 5929 6566 0 8 1480 502 270 64 28 chr4 117428055 117428196 -38201924 + B1F SINE Alu 3 148 -1 8 1480 514 280 39 16 chr4 117428258 117428385 -38201735 - ID_B1 SINE B4 -13 211 82 8 1480 520 181 28 36 chr4 117428399 117428589 -38201531 - ORR1D1 LTR MaLR -1 378 95 8 1480 2638 132 58 42 chr4 117428589 117429088 -38201032 + RLTR28 LTR ERVL 1 507 -17 8 1480 640 139 28 0 chr4 117429099 117429207 -38200913 - ORR1D1 LTR MaLR -263 111 1 8 1480 197 132 26 0 chr4 117430413 117430451 -38199669 + T-rich Low_complexity Low_complexity 1 39 0 8 1480 433 224 102 0 chr4 117430681 117430779 -38199341 + RSINE1 SINE B4 28 135 -30 8 1480 507 304 274 25 chr4 117430848 117431216 -38198904 - LTR16D LTR ERVL -44 607 148 8 1480 3093 160 60 13 chr4 117432109 117432660 -38197460 + RLTR20B3 LTR ERVK 1 577 0 8 1480 954 178 26 36 chr4 117432660 117432850 -38197270 + B3 SINE B2 24 211 -5 8 1480 393 234 58 95 chr4 117433848 117433985 -38196135 - B1F SINE Alu -11 138 7 8 1480 544 203 16 56 chr4 117434428 117434553 -38195567 + PB1D9 SINE Alu 1 120 0 8 1480 1224 96 37 21 chr4 117434584 117434775 -38195345 + B2_Mm2 SINE B2 2 195 0 8 1480 394 244 22 0 chr4 117434785 117434875 -38195245 - RSINE1 SINE B4 -71 94 3 8 1480 368 184 32 72 chr4 117435176 117435286 -38194834 + B1_Mm SINE Alu 40 142 -6 9 1480 572 105 84 0 chr4 117435526 117435621 -38194499 - B1_Mus2 SINE Alu -6 141 39 9 1480 770 156 34 54 chr4 117435675 117435824 -38194296 + B1_Mm SINE Alu 2 147 0 9 1480 1373 44 5 52 chr4 117435885 117436077 -38194043 + B2_Mm2 SINE B2 1 183 -12 9 1480 229 218 0 0 chr4 117436175 117436230 -38193890 + L1M4c LINE L1 2177 2231 -4153 9 1480 334 212 114 34 chr4 117436287 117436375 -38193745 + B1_Mur1 SINE Alu 50 144 -5 9 1480 552 201 58 22 chr4 117436771 117436908 -38193212 + B1_Mur2 SINE Alu 2 143 -6 9 1480 734 152 72 7 chr4 117437181 117437320 -38192800 + B1_Mur2 SINE Alu 2 149 0 9 1480 732 165 47 0 chr4 117437340 117437467 -38192653 + B1_Mur3 SINE Alu 7 139 -10 9 1480 318 136 32 63 chr4 117437584 117437631 -38192489 + B1_Mus2 SINE Alu 79 124 -23 9 1480 1176 23 0 0 chr4 117437631 117437764 -38192356 - B1_Mus1 SINE Alu -14 134 2 9 1480 318 136 32 63 chr4 117437764 117437779 -38192341 + B1_Mus2 SINE Alu 125 139 -8 9 1480 206 268 0 0 chr4 117438002 117438058 -38192062 + C-rich Low_complexity Low_complexity 1 56 0 9 1480 485 72 19 48 chr4 117438412 117438515 -38191605 - Lx2 LINE L1 -1 6996 6897 9 1480 475 234 74 9 chr4 117438840 117438948 -38191172 + B3 SINE B2 96 210 -6 9 1480 287 284 56 5 chr4 117438981 117439063 -38191057 + B1_Mus2 SINE Alu 43 140 -9 9 1480 285 279 83 46 chr4 117439100 117439209 -38190911 + PB1D10 SINE Alu 3 115 -2 9 1480 456 19 0 0 chr4 117439247 117439300 -38190820 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1480 1238 54 0 0 chr4 117439366 117439513 -38190607 - B1_Mm SINE Alu 0 147 1 9 1480 823 122 68 8 chr4 117439899 117440031 -38190089 - B1_Mur4 SINE Alu 0 150 11 9 1480 394 211 16 114 chr4 117439926 117440049 -38190071 - MT2B LTR ERVL -337 264 154 9 1480 21 0 0 0 chr4 117440053 117440074 -38190046 + GC_rich Low_complexity Low_complexity 1 21 0 9 1480 213 170 213 0 chr4 117440081 117440128 -38189992 - PB1D7 SINE Alu -11 109 53 9 1480 279 0 0 0 chr4 117440279 117440310 -38189810 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1481 389 176 52 125 chr4 117440592 117440728 -38189392 + MT2B LTR ERVL 139 264 -337 9 1481 948 75 0 29 chr4 117440616 117440753 -38189367 + B1_Mus1 SINE Alu 6 138 -10 9 1481 250 26 0 49 chr4 117440753 117440794 -38189326 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1481 352 180 13 0 chr4 117440810 117440886 -38189234 - B1_Mur4 SINE Alu -48 79 2 9 1481 338 173 0 90 chr4 117440820 117440898 -38189222 - ID_B1 SINE B4 -77 147 81 9 1481 1242 79 54 33 chr4 117440951 117441135 -38188985 - B2_Mm2 SINE B2 -7 188 1 9 1481 234 229 0 0 chr4 117441243 117441291 -38188829 - B3A SINE B2 -150 48 1 9 1481 740 247 37 12 chr4 117441294 117441458 -38188662 - B3A SINE B2 -21 177 10 9 1481 531 194 0 0 chr4 117441756 117441864 -38188256 + (TA)n Simple_repeat Simple_repeat 1 108 0 9 1481 180 0 0 0 chr4 117441925 117441945 -38188175 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1481 1213 186 49 63 chr4 117442019 117442306 -38187814 + ORR1D1 LTR MaLR 1 283 -91 9 1481 395 233 73 64 chr4 117442482 117442592 -38187528 - B1_Mm SINE Alu 0 147 37 9 1481 301 226 358 64 chr4 117442627 117442792 -38187328 - B3 SINE B2 0 216 3 9 1481 373 262 113 16 chr4 117442837 117442961 -38187159 - ID_B1 SINE B4 -8 216 81 9 1481 22 35 0 0 chr4 117443107 117443136 -38186984 + AT_rich Low_complexity Low_complexity 1 29 0 9 1481 1954 199 130 31 chr4 117443137 117443682 -38186438 - Lx7 LINE L1 0 7696 7098 9 1481 243 88 0 0 chr4 117443908 117443942 -38186178 + (TCC)n Simple_repeat Simple_repeat 2 35 0 9 1481 674 181 83 57 chr4 117443992 117444185 -38185935 - B3A SINE B2 0 198 1 9 1481 640 195 114 0 chr4 117444356 117444479 -38185641 - B1_Mus2 SINE Alu -8 139 3 9 1481 446 230 86 29 chr4 117444479 117444495 -38185625 - B4A SINE B4 -73 219 73 9 1481 201 39 0 0 chr4 117444496 117444522 -38185598 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1481 357 236 1 135 chr4 117444559 117444645 -38185475 + B1F SINE Alu 35 137 -12 9 1481 1215 63 0 0 chr4 117444793 117444967 -38185153 + (TG)n Simple_repeat Simple_repeat 2 175 0 9 1481 216 163 0 0 chr4 117444967 117445010 -38185110 - ID2 SINE ID -40 43 1 9 1481 281 396 58 28 chr4 117445191 117445591 -38184529 + LTR16A LTR ERVL 1 412 -39 9 1481 297 288 0 0 chr4 117445717 117445783 -38184337 - ID_B1 SINE B4 -16 208 143 9 1481 862 176 122 37 chr4 117445795 117445984 -38184136 - B3 SINE B2 -6 210 6 9 1481 508 298 41 117 chr4 117445992 117446163 -38183957 - B3 SINE B2 -11 184 27 9 1481 978 114 0 28 chr4 117446175 117446319 -38183801 - B1_Mus2 SINE Alu 0 147 8 9 1481 231 236 97 8 chr4 117446219 117446343 -38183777 - ORR1B1-int LTR MaLR -755 754 620 9 1481 394 292 48 48 chr4 117446343 117446469 -38183651 - B3 SINE B2 -24 192 67 9 1481 1185 59 130 0 chr4 117446524 117446693 -38183427 + B2_Mm2 SINE B2 2 192 -3 9 1481 561 148 23 0 chr4 117446749 117446837 -38183283 + B1_Mur3 SINE Alu 60 149 0 9 1481 671 181 16 16 chr4 117446877 117447006 -38183114 - RSINE1 SINE B4 -33 132 4 9 1481 367 202 71 0 chr4 117447143 117447242 -38182878 - B1F SINE Alu 0 149 44 9 1481 238 182 27 108 chr4 117447234 117447253 -38182867 + MLT1B LTR MaLR 256 270 -120 9 1481 754 292 24 28 chr4 117447253 117447542 -38182578 - B4 SINE B4 -4 288 1 9 1481 238 182 27 108 chr4 117447542 117447596 -38182524 + MLT1B LTR MaLR 271 323 -67 9 1481 1266 178 0 9 chr4 117447787 117448008 -38182112 - RLTR18B LTR ERVK -3 509 291 9 1481 1211 212 21 4 chr4 117448042 117448283 -38181837 - RLTR18B LTR ERVK -216 296 52 9 1481 627 88 0 0 chr4 117448305 117448396 -38181724 + (TG)n Simple_repeat Simple_repeat 2 92 0 9 1481 227 342 40 0 chr4 117448441 117448517 -38181603 - B1_Mm SINE Alu 0 147 69 9 1481 726 230 0 36 chr4 117448545 117448712 -38181408 - RSINE1 SINE B4 0 165 5 9 1481 391 266 144 10 chr4 117448799 117449000 -38181120 + L2 LINE L2 1281 1508 -1911 9 1481 312 278 14 0 chr4 117449180 117449252 -38180868 + ID4_ SINE ID 2 74 -9 9 1481 229 204 19 0 chr4 117449280 117449334 -38180786 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1481 2705 114 12 20 chr4 117449403 117449522 -38180598 + MTB LTR MaLR 1 116 -284 9 1481 3077 100 32 17 chr4 117449522 117449988 -38180132 - MT2C_Mm LTR ERVL -2 473 1 9 1481 2705 114 12 20 chr4 117449988 117450271 -38179849 + MTB LTR MaLR 117 400 0 9 1481 672 280 103 9 chr4 117450285 117450498 -38179622 - B4 SINE B4 -10 282 50 9 1481 575 241 35 7 chr4 117450633 117450775 -38179345 + B1F1 SINE Alu 3 148 -1 9 1481 722 194 112 0 chr4 117450828 117450962 -38179158 - B1_Mur4 SINE Alu 0 150 2 9 1481 22 0 0 0 chr4 117450963 117450985 -38179135 + AT_rich Low_complexity Low_complexity 1 22 0 9 1481 765 167 15 8 chr4 117451143 117451276 -38178844 + B1_Mus1 SINE Alu 1 134 -14 9 1481 251 114 0 22 chr4 117451277 117451322 -38178798 + (GGA)n Simple_repeat Simple_repeat 2 45 0 9 1481 401 342 8 0 chr4 117451324 117451444 -38178676 + L2a LINE L2 3305 3425 -1 9 1481 536 236 63 132 chr4 117451745 117451950 -38178170 - B3A SINE B2 -25 191 1 9 1481 223 300 0 0 chr4 117451951 117452011 -38178109 - ID_B1 SINE B4 -69 155 96 9 1481 216 288 0 0 chr4 117452449 117452508 -38177612 + C-rich Low_complexity Low_complexity 1 59 0 9 1481 806 234 92 75 chr4 117453662 117453867 -38176253 + B4A SINE B4 4 228 -64 9 1481 1156 72 0 0 chr4 117453867 117454006 -38176114 + B1_Mus1 SINE Alu 1 139 -9 9 1481 289 0 49 0 chr4 117454006 117454047 -38176073 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1481 806 234 92 75 chr4 117454047 117454122 -38175998 + B4A SINE B4 229 289 -3 9 1481 213 263 103 17 chr4 117454247 117454305 -38175815 + RSINE1 SINE B4 1 63 -102 9 1481 258 56 0 0 chr4 117454307 117454343 -38175777 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 9 1481 228 259 35 0 chr4 117454348 117454406 -38175714 + GA-rich Low_complexity Low_complexity 2 61 0 9 1481 312 225 27 53 chr4 117454568 117454643 -38175477 + ID4_ SINE ID 8 80 -3 9 1481 326 292 52 10 chr4 117454727 117454824 -38175296 - PB1D7 SINE Alu -19 101 1 9 1481 1171 192 5 9 chr4 117454909 117455125 -38174995 + B3 SINE B2 2 216 0 9 1481 321 265 52 23 chr4 117455453 117455577 -38174543 + PB1D10 SINE Alu 10 143 -6 9 1481 1251 84 96 0 chr4 117455588 117455766 -38174354 + B2_Mm2 SINE B2 1 195 0 9 1481 237 266 62 15 chr4 117455787 117455852 -38174268 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 9 1481 302 218 0 18 chr4 117455804 117455860 -38174260 + ID4_ SINE ID 28 82 -1 9 1481 2449 117 8 21 chr4 117455877 117456261 -38173859 + RLTR14 LTR ERV1 1 379 -3 9 1481 658 272 12 48 chr4 117456306 117456425 -38173695 + RSINE1 SINE B4 3 122 -43 9 1481 2896 48 40 6 chr4 117456425 117456778 -38173342 - RLTR10B2 LTR ERVK 0 365 1 9 1481 658 272 12 48 chr4 117456778 117456824 -38173296 + RSINE1 SINE B4 123 162 -3 9 1481 770 167 8 0 chr4 117457106 117457226 -38172894 - B1_Mus1 SINE Alu -27 121 1 9 1481 225 286 7 57 chr4 117457119 117457250 -38172870 - ORR1B1-int LTR MaLR -755 754 627 9 1481 210 71 0 0 chr4 117457250 117457278 -38172842 + (TAA)n Simple_repeat Simple_repeat 1 28 0 9 1481 611 262 16 0 chr4 117457306 117457432 -38172688 - RSINE1 SINE B4 -35 130 3 9 1481 965 273 39 0 chr4 117457464 117457695 -38172425 + B4A SINE B4 2 241 -51 9 1481 635 242 38 13 chr4 117457715 117457874 -38172246 + RSINE1 SINE B4 3 165 0 9 1481 1947 211 29 2 chr4 117457930 117458338 -38171782 - MTD LTR MaLR 0 419 1 1 1481 430 283 23 38 chr4 117458346 117458478 -38171642 + RSINE1 SINE B4 3 132 -33 1 1481 924 168 0 20 chr4 117458501 117458653 -38171467 - B1_Mur4 SINE Alu 0 150 2 1 1481 282 304 0 55 chr4 117458669 117458742 -38171378 + B4A SINE B4 224 292 0 9 1481 222 342 52 17 chr4 117458783 117458899 -38171221 + L2 LINE L2 1817 1936 -1483 1 1481 751 165 16 8 chr4 117458987 117459115 -38171005 + B1_Mur2 SINE Alu 8 136 -13 1 1481 840 42 235 8 chr4 117459354 117459473 -38170647 + B1_Mm SINE Alu 1 146 -1 1 1481 249 31 0 0 chr4 117459490 117459508 -38170612 + (TA)n Simple_repeat Simple_repeat 2 19 0 1 1481 366 23 0 0 chr4 117459508 117459551 -38170569 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1481 249 31 0 0 chr4 117459551 117459564 -38170556 + (TA)n Simple_repeat Simple_repeat 1 13 0 1 1481 276 126 45 81 chr4 117459605 117459694 -38170426 - FLAM_A SINE Alu -227 68 21 1 1481 204 97 0 0 chr4 117459747 117459778 -38170342 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 1 1481 744 218 0 34 chr4 117460799 117460946 -38169174 - RSINE1 SINE B4 0 165 24 1 1481 231 191 0 0 chr4 117460946 117460988 -38169132 - RSINE1 SINE B4 -109 56 15 1 1481 468 271 49 8 chr4 117461470 117461593 -38168527 + ID_B1 SINE B4 94 221 -3 1 1481 293 280 86 0 chr4 117461607 117461700 -38168420 + B1F2 SINE Alu 1 101 -48 1 1481 996 270 132 7 chr4 117461728 117462131 -38167989 + L1MA7 LINE L1 5720 6172 -119 1 1481 1241 48 0 0 chr4 117462305 117462452 -38167668 + B1_Mm SINE Alu 1 147 0 1 1481 589 129 234 1 chr4 117462493 117462616 -38167504 + B3 SINE B2 3 140 -53 1 1481 420 20 0 0 chr4 117462631 117462680 -38167440 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1 1481 617 128 248 0 chr4 117462683 117462800 -38167320 + B1_Mus1 SINE Alu 1 146 -2 1 1481 24 32 0 0 chr4 117462825 117462856 -38167264 + AT_rich Low_complexity Low_complexity 1 31 0 1 1481 3106 35 70 0 chr4 117462977 117463351 -38166769 - MTB LTR MaLR 0 400 1 1 1481 224 122 0 24 chr4 117463520 117463562 -38166558 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 1481 4636 62 1 6 chr4 117463642 117464238 -38165882 + LTRIS_Mus LTR ERV1 1 570 -17 1 1481 267 239 0 0 chr4 117464335 117464381 -38165739 + B3 SINE B2 133 178 -38 1 1481 645 230 162 64 chr4 117464409 117464461 -38165659 + B4 SINE B4 2 51 -241 1 1481 1100 42 0 78 chr4 117464461 117464615 -38165505 + B1_Mus1 SINE Alu 1 142 -6 1 1481 243 0 0 0 chr4 117464618 117464645 -38165475 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1481 645 230 162 64 chr4 117464645 117464853 -38165267 + B4 SINE B4 52 292 0 1 1481 197 172 16 0 chr4 117464855 117464919 -38165201 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1481 905 132 0 0 chr4 117464934 117465063 -38165057 + B1_Mus2 SINE Alu 1 129 -18 1 1481 800 221 89 60 chr4 117465284 117465831 -38164289 + L1MA6 LINE L1 4915 5487 -813 1 1481 772 184 0 49 chr4 117465836 117465895 -38164225 + B1_Mur2 SINE Alu 2 56 -93 1 1481 4389 111 87 52 chr4 117465895 117466771 -38163349 - RMER17A2 LTR ERVK 0 906 1 1 1481 772 184 0 49 chr4 117466771 117466854 -38163266 + B1_Mur2 SINE Alu 57 137 -12 1 1481 674 270 118 4 chr4 117466879 117467158 -38162962 + L1MA6 LINE L1 5539 5849 -451 1 1481 1309 64 69 6 chr4 117467158 117467332 -38162788 + B2_Mm2 SINE B2 1 185 -10 1 1481 535 288 25 12 chr4 117467333 117467442 -38162678 + L1MA6 LINE L1 6133 6241 -59 1 1481 1151 58 0 0 chr4 117467442 117467580 -38162540 + B1_Mus1 SINE Alu 1 138 -10 1 1481 852 10 0 0 chr4 117467580 117467677 -38162443 + (GAAA)n Simple_repeat Simple_repeat 2 98 0 1 1481 535 288 25 12 chr4 117467677 117467728 -38162392 + L1MA6 LINE L1 6242 6295 -5 1 1481 757 151 57 14 chr4 117467741 117467882 -38162238 + B1_Mus1 SINE Alu 1 147 -1 1 1481 363 271 46 18 chr4 117467885 117467994 -38162126 + B3A SINE B2 3 114 -84 1 1481 245 314 34 101 chr4 117468015 117468164 -38161956 + MT2B LTR ERVL 138 276 -325 1 1481 786 189 15 0 chr4 117468049 117468181 -38161939 + ID_B1 SINE B4 82 215 -9 1 1481 325 287 42 96 chr4 117468181 117468209 -38161911 - YREP_Mm Unknown Unknown -1499 290 157 1 1481 285 233 11 23 chr4 117468321 117468409 -38161711 + L1MA7 LINE L1 6203 6289 -2 1 1481 1129 51 0 0 chr4 117468540 117468677 -38161443 - B1_Mus2 SINE Alu -9 138 2 1 1481 266 299 0 38 chr4 117468844 117468924 -38161196 - RSINE1 SINE B4 -87 78 2 1 1481 226 344 70 40 chr4 117468974 117468985 -38161135 + ID SINE ID 74 87 -137 1 1481 310 252 46 35 chr4 117468985 117469093 -38161027 + PB1D10 SINE Alu 3 119 -1 1 1481 405 54 0 0 chr4 117469232 117469288 -38160832 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1481 328 193 33 8 chr4 117469287 117469407 -38160713 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1481 236 262 67 90 chr4 117470882 117471016 -38159104 + MTEb LTR MaLR 236 366 -13 1 1481 1109 52 0 0 chr4 117471026 117471161 -38158959 + B1_Mus1 SINE Alu 2 136 -12 1 1481 228 286 16 0 chr4 117471251 117471314 -38158806 - L1M5 LINE L1 -580 5584 5521 1 1481 749 136 45 15 chr4 117471317 117471451 -38158669 + B1_Mus2 SINE Alu 10 147 0 1 1481 390 246 42 125 chr4 117471327 117471471 -38158649 + B4A SINE B4 105 236 -56 1 1481 480 245 163 14 chr4 117471625 117471766 -38158354 + RSINE1 SINE B4 2 163 -2 1 1481 249 98 0 0 chr4 117471778 117471819 -38158301 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1481 1014 48 0 16 chr4 117471819 117471947 -38158173 - B1_Mus1 SINE Alu 0 148 23 1 1481 421 206 18 81 chr4 117471848 117471959 -38158161 - MT2B LTR ERVL -325 276 173 1 1481 677 275 119 26 chr4 117471974 117472168 -38157952 + B3 SINE B2 1 212 -4 1 1481 273 89 0 0 chr4 117472416 117472461 -38157659 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1481 843 212 27 11 chr4 117472597 117472783 -38157337 + B3 SINE B2 28 216 0 1 1481 975 125 14 20 chr4 117472790 117472937 -38157183 + B1_Mur4 SINE Alu 5 150 0 1 1481 197 65 0 31 chr4 117472950 117472982 -38157138 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1481 363 213 26 13 chr4 117473401 117473477 -38156643 - ID_B1 SINE B4 0 224 148 1 1481 501 252 43 0 chr4 117473478 117473593 -38156527 - ID_B1 SINE B4 -25 199 80 1 1481 242 340 20 41 chr4 117473719 117473817 -38156303 - RSINE1 SINE B4 -12 153 58 1 1481 311 219 0 155 chr4 117473862 117473959 -38156161 + ID4_ SINE ID 2 83 0 1 1481 599 213 249 0 chr4 117473966 117474135 -38155985 + B3 SINE B2 1 211 -5 1 1481 951 56 0 0 chr4 117474145 117474271 -38155849 - B1_Mus1 SINE Alu -21 127 2 1 1481 1488 34 73 0 chr4 117474390 117474569 -38155551 + B2_Mm1t SINE B2 1 192 -1 1 1481 319 325 201 0 chr4 117474792 117474961 -38155159 + L1M5 LINE L1 5257 5459 -714 1 1481 437 146 183 0 chr4 117474973 117475055 -38155065 - B1_Mur2 SINE Alu -32 117 21 1 1481 441 0 0 0 chr4 117475060 117475109 -38155011 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1 1481 360 241 12 12 chr4 117475110 117475190 -38154930 - RSINE1 SINE B4 -84 81 2 1 1481 604 185 85 0 chr4 117475359 117475489 -38154631 - B1_Mur4 SINE Alu -9 141 1 1 1481 192 77 0 0 chr4 117475494 117475520 -38154600 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1481 774 201 8 0 chr4 117475520 117475654 -38154466 - B1_Mur1 SINE Alu -13 136 2 1 1481 230 242 63 16 chr4 117475977 117476040 -38154080 + Charlie14a DNA MER1_type 414 479 -685 1 1481 247 279 36 31 chr4 117476042 117476147 -38153973 - ID4 SINE ID -46 106 1 1 1481 840 62 9 0 chr4 117476179 117476291 -38153829 + B1_Mur3 SINE Alu 32 144 -5 1 1481 543 261 24 48 chr4 117476421 117476546 -38153574 + RSINE1 SINE B4 3 124 -41 1 1481 351 0 0 0 chr4 117476548 117476587 -38153533 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1481 643 207 0 9 chr4 117476613 117476725 -38153395 + B1_Mur2 SINE Alu 24 134 -15 1 1481 540 235 78 0 chr4 117476773 117476888 -38153232 + RSINE1 SINE B4 3 126 -39 1 1481 540 315 33 20 chr4 117477027 117477179 -38152941 - RSINE1 SINE B4 0 165 12 1 1481 1283 162 13 4 chr4 117477242 117477477 -38152643 + Lx LINE L1 6406 6642 -12 1 1481 1298 83 10 58 chr4 117477492 117477697 -38152423 + B2_Mm2 SINE B2 1 195 0 1 1481 399 213 2 18 chr4 117477700 117477799 -38152321 - B1_Mus2 SINE Alu -47 101 6 1 1481 1027 190 80 5 chr4 117477951 117478152 -38151968 - B3 SINE B2 0 216 1 1 1481 1135 270 105 28 chr4 117478183 117478572 -38151548 + MTD LTR MaLR 1 419 0 1 1481 753 102 0 118 chr4 117478899 117479043 -38151077 - B1_Mus1 SINE Alu -1 147 21 1 1481 434 286 49 21 chr4 117479125 117479268 -38150852 - ID_B1 SINE B4 -8 216 70 1 1481 846 226 62 10 chr4 117479282 117479474 -38150646 + MTD LTR MaLR 1 202 -217 1 1481 706 160 48 0 chr4 117479488 117479613 -38150507 + B1_Mur1 SINE Alu 9 139 -10 1 1481 21 0 0 0 chr4 117479946 117479967 -38150153 + AT_rich Low_complexity Low_complexity 1 21 0 1 1481 1155 211 0 0 chr4 117479973 117480181 -38149939 + B3 SINE B2 2 209 -7 1 1481 657 242 0 0 chr4 117480198 117480326 -38149794 + RSINE1 SINE B4 3 130 -35 1 1481 656 200 8 0 chr4 117480741 117480861 -38149259 - ID_B1 SINE B4 0 224 104 1 1481 296 215 112 12 chr4 117480796 117480876 -38149244 - PB1D7 SINE Alu -29 91 4 1 1481 596 197 63 32 chr4 117481184 117481310 -38148810 + B3 SINE B2 59 188 -28 1 1481 243 0 0 0 chr4 117481319 117481346 -38148774 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1481 223 312 129 90 chr4 117481375 117481416 -38148704 + B4A SINE B4 62 221 -70 1 1481 528 205 168 9 chr4 117481416 117481529 -38148591 + B1F1 SINE Alu 13 143 -6 1 1481 266 275 43 0 chr4 117481544 117481613 -38148507 + ID4 SINE ID 1 72 -11 1 1481 269 297 132 0 chr4 117481708 117481799 -38148321 - MER63B DNA AcHobo -3 433 331 1 1481 249 254 42 63 chr4 117481800 117481943 -38148177 + L1M5 LINE L1 5522 5661 -512 1 1481 1119 29 0 62 chr4 117481975 117482120 -38148000 + B1_Mus1 SINE Alu 1 136 -12 1 1481 934 169 0 0 chr4 117482144 117482292 -38147828 + B1_Mus1 SINE Alu 1 148 0 1 1481 867 121 0 0 chr4 117482296 117482420 -38147700 + B2_Mm2 SINE B2 2 125 -70 1 1481 371 21 21 0 chr4 117482450 117482498 -38147622 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1481 1245 54 0 0 chr4 117482514 117482661 -38147459 - B1_Mus2 SINE Alu 0 147 1 1 1481 244 266 37 0 chr4 117482719 117482800 -38147320 + L1M5 LINE L1 5765 5848 -392 1 1481 460 280 124 14 chr4 117483027 117483172 -38146948 + MLT1B LTR MaLR 224 384 -6 1 1481 1389 51 6 0 chr4 117484012 117484190 -38145930 - B2_Mm1a SINE B2 0 193 15 1 1481 248 328 54 31 chr4 117484639 117484768 -38145352 + MIR SINE MIR 15 146 -116 1 1481 417 220 73 54 chr4 117484799 117484911 -38145209 + PB1D10 SINE Alu 1 117 0 1 1481 270 0 0 0 chr4 117484941 117484971 -38145149 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1481 1004 31 54 0 chr4 117485447 117485577 -38144543 - B2_Mm1a SINE B2 -3 190 54 1 1481 244 324 0 0 chr4 117485866 117485934 -38144186 - MER20 DNA MER1_type -38 181 114 1 1481 974 87 7 7 chr4 117487448 117487587 -38142533 + B2_Mm2 SINE B2 48 186 -9 1 1481 857 210 75 5 chr4 117487722 117487923 -38142197 - B3 SINE B2 -1 215 1 1 1481 262 368 0 9 chr4 117488031 117488146 -38141974 + MIRb SINE MIR 110 223 -45 1 1481 233 289 83 90 chr4 117488155 117488311 -38141809 + RLTR25B LTR ERVK 355 509 -519 1 1481 585 143 0 62 chr4 117488230 117488342 -38141778 + B1_Mur3 SINE Alu 28 132 -17 1 1481 257 271 129 0 chr4 117488602 117488687 -38141433 + PB1 SINE Alu 26 121 -6 1 1481 1306 97 5 11 chr4 117488689 117488876 -38141244 + B2_Mm1t SINE B2 5 190 -3 1 1481 931 195 57 43 chr4 117488882 117489091 -38141029 - B3 SINE B2 0 216 5 1 1481 474 274 84 49 chr4 117489277 117489460 -38140660 - B3A SINE B2 -25 191 15 1 1481 615 277 0 0 chr4 117489481 117489611 -38140509 - ID_B1 SINE B4 -8 216 87 1 1481 358 259 0 0 chr4 117489651 117489732 -38140388 + PB1D7 SINE Alu 8 88 -32 1 1481 784 171 20 40 chr4 117489753 117489905 -38140215 + B1_Mur4 SINE Alu 1 149 -1 1 1481 308 96 39 0 chr4 117490036 117490088 -38140032 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 1 1481 739 259 164 9 chr4 117490138 117490309 -38139811 + MTD LTR MaLR 11 216 -203 1 1481 215 257 189 0 chr4 117490309 117490373 -38139747 + B3 SINE B2 2 79 -137 1 1481 1693 201 104 76 chr4 117490373 117490846 -38139274 - RMER19C LTR ERVK 0 611 126 1 1481 217 245 20 0 chr4 117490869 117490918 -38139202 + RSINE1 SINE B4 74 123 -42 1 1481 821 296 38 57 chr4 117490979 117491348 -38138772 - RMER15-int LTR ERVL -326 4673 4312 1 1481 213 121 0 0 chr4 117491348 117491381 -38138739 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1481 1145 95 0 0 chr4 117491384 117491531 -38138589 - B1_Mus1 SINE Alu -1 147 1 1 1481 375 243 0 0 chr4 117491531 117491605 -38138515 - Lx8 LINE L1 -1075 6398 6325 1 1481 519 260 50 39 chr4 117491676 117491856 -38138264 - B3A SINE B2 -16 182 1 1 1481 25 51 0 0 chr4 117492418 117492457 -38137663 + AT_rich Low_complexity Low_complexity 1 39 0 1 1481 1412 99 10 0 chr4 117492526 117492718 -38137402 - B2_Mm2 SINE B2 0 195 2 1 1481 230 236 85 11 chr4 117492746 117492840 -38137280 - Lx9 LINE L1 -63 7581 7481 1 1481 1226 61 0 0 chr4 117492850 117492998 -38137122 + B1_Mus1 SINE Alu 1 148 0 1 1481 2262 194 127 96 chr4 117493025 117493601 -38136519 + RMER19C LTR ERVK 1 594 -17 1 1481 1289 92 46 0 chr4 117493601 117493774 -38136346 + B2_Mm2 SINE B2 1 181 -14 1 1481 509 80 313 17 chr4 117493845 117493960 -38136160 + B2_Mm2 SINE B2 47 195 0 1 1481 860 212 29 5 chr4 117494002 117494206 -38135914 + Lx9 LINE L1 7257 7465 -179 1 1481 363 72 342 36 chr4 117494224 117494335 -38135785 - B2_Mm2 SINE B2 -3 192 48 1 1481 1268 68 28 22 chr4 117494368 117494547 -38135573 - B2_Mm2 SINE B2 -14 181 2 1 1481 845 161 8 0 chr4 117495052 117495182 -38134938 - B1_Mur3 SINE Alu -17 132 2 1 1481 660 226 30 59 chr4 117495354 117495556 -38134564 - B3A SINE B2 0 198 3 1 1481 698 315 52 11 chr4 117495577 117495847 -38134273 - RMER15-int LTR ERVL -3373 1626 1346 1 1481 1663 233 44 12 chr4 117495934 117496134 -38133986 - RMER15-int LTR ERVL -3800 1199 995 1 1481 684 0 0 0 chr4 117496134 117496210 -38133910 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1481 1663 233 44 12 chr4 117496210 117496418 -38133702 - RMER15-int LTR ERVL -4005 994 779 1 1481 2016 152 102 11 chr4 117496423 117496795 -38133325 - MTD LTR MaLR -13 406 1 1 1481 293 354 54 0 chr4 117496961 117497091 -38133029 - RMER15-int LTR ERVL -4467 532 396 1 1481 468 236 8 16 chr4 117497139 117497264 -38132856 - RMER15-int LTR ERVL -4870 129 6 1 1481 1175 209 52 22 chr4 117497271 117497540 -38132580 - RMER15 LTR ERVL -5 570 294 1 1481 743 204 18 47 chr4 117498307 117498477 -38131643 - RMER15 LTR ERVL -382 193 29 1 1481 1012 123 148 35 chr4 117498491 117498693 -38131427 - URR1B DNA MER1_type 0 225 1 1 1481 336 243 256 7 chr4 117498752 117498889 -38131231 - Charlie1a DNA MER1_type -426 1029 859 1 1481 239 232 18 0 chr4 117498882 117498938 -38131182 + PB1D10 SINE Alu 55 111 -6 1 1481 329 295 38 9 chr4 117498941 117499047 -38131073 - Charlie1a DNA MER1_type -564 891 783 1 1481 223 186 0 23 chr4 117499047 117499091 -38131029 + CT-rich Low_complexity Low_complexity 1 43 0 1 1481 537 303 8 0 chr4 117499099 117499221 -38130899 - ID_B1 SINE B4 -21 203 81 1 1481 448 211 147 0 chr4 117499227 117499322 -38130798 - B1F SINE Alu -6 143 35 1 1481 799 227 102 49 chr4 117499325 117499589 -38130531 - Charlie1a DNA MER1_type -676 779 502 1 1481 247 250 88 0 chr4 117499733 117499801 -38130319 - Charlie1a DNA MER1_type -1085 370 297 1 1481 213 235 0 26 chr4 117500069 117500137 -38129983 + PB1D7 SINE Alu 16 79 -38 1 1481 843 233 90 0 chr4 117500141 117500330 -38129790 + B3 SINE B2 1 206 -10 2 1481 422 364 52 22 chr4 117500334 117500564 -38129556 - Charlie1a DNA MER1_type -1174 281 45 3 1481 278 273 111 22 chr4 117500677 117500767 -38129353 + B1F SINE Alu 23 120 -29 4 1481 1123 95 0 13 chr4 117500833 117500983 -38129137 - B1_Mus1 SINE Alu 0 148 1 5 1481 288 0 0 0 chr4 117500998 117501030 -38129090 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1481 328 362 75 54 chr4 117501033 117501313 -38128807 - B4 SINE B4 -5 287 2 7 1481 225 0 0 0 chr4 117501333 117501358 -38128762 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1481 212 59 29 0 chr4 117501679 117501713 -38128407 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 9 1481 230 211 35 0 chr4 117501735 117501792 -38128328 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 1 1481 210 333 133 0 chr4 117502072 117502162 -38127958 + MIRb SINE MIR 29 130 -138 1 1481 1149 75 7 0 chr4 117505227 117505373 -38124747 + B1_Mus1 SINE Alu 1 147 -1 1 1481 297 292 26 78 chr4 117505604 117505705 -38124415 + B1F2 SINE Alu 40 139 -10 1 1481 254 29 29 0 chr4 117505705 117505740 -38124380 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 1 1481 297 292 26 78 chr4 117505740 117505753 -38124367 + B1F2 SINE Alu 140 148 -1 1 1481 290 302 112 0 chr4 117505781 117505897 -38124223 + B4 SINE B4 75 203 -89 1 1481 535 254 15 0 chr4 117505802 117505932 -38124188 + B1_Mur1 SINE Alu 18 149 0 1 1481 505 189 20 134 chr4 117506360 117506413 -38123707 + B4 SINE B4 50 172 -52 1 1481 901 96 7 22 chr4 117506413 117506551 -38123569 + B1_Mus1 SINE Alu 4 139 -9 1 1481 505 189 20 134 chr4 117506551 117506571 -38123549 + B4 SINE B4 173 224 0 1 1481 257 200 0 0 chr4 117507236 117507281 -38122839 - MIRc SINE MIR -112 156 112 1 1481 986 150 7 0 chr4 117509413 117509560 -38120560 - B1_Mus1 SINE Alu 0 148 1 2 1481 190 339 30 45 chr4 117509940 117510073 -38120047 - L2c LINE L2 -232 3155 3025 2 1481 600 259 9 94 chr4 117510270 117510483 -38119637 + B3A SINE B2 1 195 -3 2 1481 565 156 160 24 chr4 117510490 117510615 -38119505 + B1_Mus1 SINE Alu 1 142 -6 2 1481 183 100 0 0 chr4 117510630 117510660 -38119460 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1481 388 251 73 14 chr4 117510681 117510821 -38119299 + B3A SINE B2 36 185 -10 2 1481 761 239 40 6 chr4 117511413 117511590 -38118530 - B3A SINE B2 -8 190 8 2 1481 285 100 0 0 chr4 117511615 117511665 -38118455 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2 1481 907 141 28 0 chr4 117511665 117511807 -38118313 - B1_Mus2 SINE Alu 0 147 2 2 1481 243 0 0 0 chr4 117511817 117511844 -38118276 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1481 538 279 0 8 chr4 117511844 117511957 -38118163 - PB1 SINE Alu -10 117 5 3 1481 239 320 40 0 chr4 117512299 117512374 -38117746 + L2b LINE L2 3298 3375 0 3 1481 258 393 57 7 chr4 117512568 117512709 -38117411 - MIRc SINE MIR -108 160 13 3 1481 930 120 0 29 chr4 117515128 117515265 -38114855 - B1_Mur4 SINE Alu -17 133 1 3 1481 1257 87 31 42 chr4 117515271 117515463 -38114657 - B2_Mm1t SINE B2 -2 191 2 3 1481 317 247 237 0 chr4 117516293 117516390 -38113730 - B1_Mur2 SINE Alu -7 142 23 3 1481 187 244 24 0 chr4 117518613 117518654 -38111466 + L2b LINE L2 3307 3348 -27 3 1481 188 289 39 0 chr4 117519006 117519058 -38111062 + MIR SINE MIR 188 241 -21 3 1481 241 367 37 0 chr4 117520131 117520240 -38109880 + MIR SINE MIR 137 249 -13 3 1481 236 361 54 28 chr4 117520224 117520409 -38109711 - MIRb SINE MIR -53 223 36 3 1481 553 256 75 0 chr4 117520437 117520570 -38109550 - B1_Mur4 SINE Alu -7 143 1 4 1481 631 234 170 5 chr4 117520614 117520803 -38109317 - B3A SINE B2 0 216 1 4 1481 199 314 0 0 chr4 117520890 117520941 -38109179 - L2b LINE L2 0 3375 3325 4 1481 270 0 0 0 chr4 117523956 117523986 -38106134 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1481 566 241 35 0 chr4 117523990 117524106 -38106014 + PB1D7 SINE Alu 1 120 0 4 1481 484 303 69 0 chr4 117524182 117524327 -38105793 + RSINE1 SINE B4 11 165 0 4 1481 254 29 29 0 chr4 117524395 117524430 -38105690 + (TTG)n Simple_repeat Simple_repeat 3 38 0 4 1481 252 86 0 0 chr4 117524863 117524898 -38105222 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1481 723 189 7 47 chr4 117526669 117526819 -38103301 - B1_Mm SINE Alu 0 147 4 4 1481 282 95 0 0 chr4 117526926 117526968 -38103152 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 4 1481 396 0 0 0 chr4 117528976 117529020 -38101100 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1481 222 315 14 14 chr4 117529442 117529516 -38100604 + (CACG)n Simple_repeat Simple_repeat 4 77 0 5 1481 252 304 12 12 chr4 117531747 117531827 -38098293 - PB1D10 SINE Alu -37 80 1 5 1481 181 310 73 80 chr4 117531992 117532129 -38097991 - MIRc SINE MIR -105 163 28 5 1481 325 211 66 0 chr4 117532232 117532308 -38097812 + ID4 SINE ID 3 83 0 5 1481 264 383 87 7 chr4 117532586 117532736 -38097384 + MIRc SINE MIR 58 219 -49 5 1481 683 142 28 56 chr4 117532873 117533015 -38097105 - B1_Mur1 SINE Alu 0 149 12 5 1481 379 204 48 10 chr4 117533090 117533194 -38096926 + PB1D10 SINE Alu 9 116 -1 5 1481 262 314 120 105 chr4 117533239 117533581 -38096539 + MamRep1161 DNA TcMar 11 357 -600 5 1481 432 275 63 35 chr4 117533612 117533755 -38096365 - Charlie17a DNA MER1_type -69 150 4 5 1481 655 268 149 0 chr4 117534430 117534624 -38095496 + ID_B1 SINE B4 2 224 0 6 1481 307 323 83 52 chr4 117534893 117535122 -38094998 - L2 LINE L2 -345 3074 2839 6 1481 218 213 12 62 chr4 117535316 117535396 -38094724 + C-rich Low_complexity Low_complexity 3 78 0 6 1481 188 299 89 25 chr4 117535646 117535725 -38094395 - L4 LINE RTE -640 1389 1306 6 1481 393 22 0 0 chr4 117537254 117537300 -38092820 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1481 188 200 120 0 chr4 117538491 117538541 -38091579 - MIR SINE MIR -139 123 68 6 1481 704 199 56 7 chr4 117539233 117539375 -38090745 + B1_Mur1 SINE Alu 1 149 0 6 1481 189 0 0 0 chr4 117543539 117543560 -38086560 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1481 318 323 99 25 chr4 117543849 117544011 -38086109 + MIR SINE MIR 19 192 -70 6 1481 181 333 27 14 chr4 117544103 117544176 -38085944 + L2 LINE L2 2346 2419 -1000 6 1481 280 256 3 0 chr4 117546114 117546195 -38083925 - MIR SINE MIR -133 135 53 7 1481 372 119 0 0 chr4 117546828 117546887 -38083233 + (TATG)n Simple_repeat Simple_repeat 4 62 0 7 1481 281 302 160 25 chr4 117546898 117547017 -38083103 - RSINE1 SINE B4 -28 137 3 7 1481 215 352 46 28 chr4 117547150 117547258 -38082862 - L2b LINE L2 -40 3335 3226 7 1481 707 176 6 119 chr4 117547643 117547811 -38082309 - B1_Mur4 SINE Alu 0 150 2 7 1481 1037 68 41 0 chr4 117548825 117548972 -38081148 + B2_Mm2 SINE B2 1 153 -42 7 1481 267 79 0 0 chr4 117548972 117549010 -38081110 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1481 233 353 50 35 chr4 117550635 117550776 -38079344 - L2b LINE L2 0 3375 3233 7 1481 186 93 55 18 chr4 117551281 117551336 -38078784 + A-rich Low_complexity Low_complexity 3 59 0 7 1481 508 331 97 16 chr4 117551340 117551712 -38078408 + L2 LINE L2 1834 2235 -1184 7 1481 296 203 246 20 chr4 117551775 117551886 -38078234 + RSINE1 SINE B4 6 131 -34 8 1481 396 278 61 74 chr4 117551990 117552153 -38077967 + RSINE1 SINE B4 5 165 0 8 1481 189 0 0 0 chr4 117552155 117552176 -38077944 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1481 183 360 35 0 chr4 117554684 117554770 -38075350 - MIRb SINE MIR -19 249 161 8 1481 222 198 37 12 chr4 117556088 117556170 -38073950 + (CCCG)n Simple_repeat Simple_repeat 2 85 0 8 1481 249 238 93 23 chr4 117558121 117558207 -38071913 - PB1D9 SINE Alu -23 97 6 8 1481 1207 62 7 0 chr4 117560986 117561132 -38068988 - B1_Mus1 SINE Alu 0 148 2 8 1481 293 62 21 0 chr4 117564088 117564136 -38065984 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 8 1481 247 246 0 0 chr4 117564884 117564945 -38065175 - RSINE1 SINE B4 -103 62 2 8 1481 292 222 0 0 chr4 117565283 117565346 -38064774 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 8 1481 588 234 47 0 chr4 117565499 117565627 -38064493 + B3 SINE B2 1 134 -82 9 1481 1229 48 0 20 chr4 117565630 117565780 -38064340 - B1_Mm SINE Alu 0 147 1 9 1481 234 0 0 0 chr4 117565780 117565806 -38064314 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1481 230 257 40 13 chr4 117565808 117565883 -38064237 + B3 SINE B2 126 202 -14 9 1481 797 188 7 27 chr4 117566832 117566980 -38063140 - B1_Mur2 SINE Alu 0 149 5 9 1481 198 194 0 0 chr4 117569277 117569313 -38060807 + L2b LINE L2 3248 3283 -92 9 1481 186 43 0 0 chr4 117570317 117570340 -38059780 + (GA)n Simple_repeat Simple_repeat 2 24 0 9 1481 209 167 0 0 chr4 117571436 117571472 -38058648 + MIRc SINE MIR 72 107 -161 9 1482 418 269 42 8 chr4 117572790 117572910 -38057210 - MIRb SINE MIR -125 143 20 9 1482 198 103 0 0 chr4 117573182 117573211 -38056909 + (TGG)n Simple_repeat Simple_repeat 2 30 0 9 1482 938 226 18 36 chr4 117575041 117575266 -38054854 + ID_B1 SINE B4 2 222 -2 9 1482 237 315 45 36 chr4 117578410 117578522 -38051598 + MLT1C-int LTR MaLR 1259 1371 0 1 1482 822 209 97 9 chr4 117578561 117578778 -38051342 + B4 SINE B4 2 249 -43 1 1482 965 287 67 24 chr4 117578809 117579212 -38050908 + MLT1C LTR MaLR 36 467 0 1 1482 601 190 141 0 chr4 117581206 117581327 -38048793 + B1_Mm SINE Alu 1 138 -9 1 1482 334 0 21 21 chr4 117581327 117581374 -38048746 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1482 249 238 45 45 chr4 117582376 117582442 -38047678 - ID4_ SINE ID -16 67 2 1 1482 411 73 0 0 chr4 117582479 117582534 -38047586 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1482 184 273 54 18 chr4 117582905 117582961 -38047159 - MIRb SINE MIR -156 112 55 1 1482 1235 68 0 0 chr4 117583148 117583295 -38046825 - B1_Mus1 SINE Alu 0 148 2 1 1482 1367 111 0 5 chr4 117583367 117583557 -38046563 + B2_Mm2 SINE B2 2 190 -5 1 1482 210 352 78 31 chr4 117584211 117584340 -38045780 + L2c LINE L2 3250 3384 -3 1 1482 790 201 27 14 chr4 117588764 117588910 -38041210 - B1_Mur3 SINE Alu 0 149 2 1 1482 673 109 0 0 chr4 117589366 117589467 -38040653 + B1_Mur4 SINE Alu 50 150 0 1 1482 433 155 14 0 chr4 117589474 117589545 -38040575 + B3 SINE B2 27 98 -118 1 1482 629 200 54 2 chr4 117589544 117589681 -38040439 - MTC LTR MaLR -8 413 225 1 1482 1024 228 77 41 chr4 117589740 117590145 -38039975 - RLTR26 LTR ERVK -179 463 6 1 1482 1259 130 100 31 chr4 117590151 117590412 -38039708 - MTB_Mm LTR MaLR -126 281 3 1 1482 402 198 53 53 chr4 117590412 117590526 -38039594 + B3 SINE B2 103 216 0 1 1482 366 313 30 0 chr4 117590650 117590749 -38039371 + RSINE1 SINE B4 15 116 -49 1 1482 488 264 135 60 chr4 117591458 117591776 -38038344 - MTD LTR MaLR -77 342 1 1 1482 397 0 88 0 chr4 117591886 117591954 -38038166 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 1482 1162 76 0 7 chr4 117591954 117592092 -38038028 - B1_Mus1 SINE Alu -10 138 1 1 1482 821 183 28 7 chr4 117592312 117592455 -38037665 + B1_Mm SINE Alu 2 147 0 1 1482 477 50 0 0 chr4 117592631 117592691 -38037429 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1482 387 0 0 0 chr4 117592790 117592833 -38037287 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1482 348 317 15 38 chr4 117593073 117593187 -38036933 - L1MEf LINE L1 -4126 2074 1963 1 1482 1089 83 0 20 chr4 117593187 117593334 -38036786 - B1_Mus1 SINE Alu -1 147 4 1 1482 348 317 15 38 chr4 117593334 117593350 -38036770 - L1MEf LINE L1 -4238 1962 1947 1 1482 2386 276 158 34 chr4 117593625 117594402 -38035718 - Lx8 LINE L1 -254 7219 6346 1 1482 222 295 121 7 chr4 117594740 117594880 -38035240 - L2 LINE L2 -1167 2252 2097 1 1482 370 294 46 0 chr4 117596036 117596145 -38033975 + PB1D7 SINE Alu 5 118 -2 1 1482 396 0 0 0 chr4 117596402 117596446 -38033674 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1482 574 292 6 13 chr4 117597014 117597170 -38032950 + RSINE1 SINE B4 9 163 -2 1 1482 550 252 94 13 chr4 117597211 117597360 -38032760 + B4A SINE B4 103 263 -29 1 1482 588 73 0 0 chr4 117597441 117597523 -38032597 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 1 1482 537 144 102 0 chr4 117597524 117597642 -38032478 - ID_B1 SINE B4 -8 216 87 1 1482 187 258 146 58 chr4 117597823 117597889 -38032231 + L2a LINE L2 3275 3349 -77 1 1482 1172 226 14 0 chr4 117597889 117598110 -38032010 - ID_B1 SINE B4 0 224 1 1 1482 187 258 146 58 chr4 117598110 117598146 -38031974 + L2a LINE L2 3350 3386 -40 1 1482 21 36 0 0 chr4 117598770 117598798 -38031322 + AT_rich Low_complexity Low_complexity 1 28 0 1 1482 218 419 15 10 chr4 117603045 117603250 -38026870 - L2 LINE L2 -891 2528 2323 1 1482 1311 108 27 5 chr4 117603354 117603540 -38026580 + B2_Mm2 SINE B2 1 190 -5 1 1482 414 100 0 0 chr4 117603540 117603600 -38026520 + (GGA)n Simple_repeat Simple_repeat 1 60 0 1 1482 191 349 118 9 chr4 117603635 117603745 -38026375 + MER5B DNA MER1_type 57 178 0 1 1482 963 75 89 7 chr4 117603774 117603909 -38026211 - B1_Mm SINE Alu 0 147 2 1 1482 792 227 11 54 chr4 117604439 117604625 -38025495 - B3A SINE B2 -5 193 16 1 1482 398 340 18 24 chr4 117606272 117606438 -38023682 - RSINE1 SINE B4 0 165 1 1 1482 603 261 30 0 chr4 117606440 117606574 -38023546 - B1F SINE Alu -7 142 5 1 1482 220 333 75 81 chr4 117606574 117606595 -38023525 - B4 SINE B4 -68 219 66 1 1482 242 359 143 19 chr4 117606983 117607361 -38022759 + L2 LINE L2 308 732 -2687 1 1482 194 214 24 0 chr4 117607398 117607440 -38022680 + L2a LINE L2 3379 3421 -5 1 1482 773 49 10 0 chr4 117607450 117607552 -38022568 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 1482 343 254 148 7 chr4 117607581 117607716 -38022404 - B4A SINE B4 -4 288 135 1 1482 1048 145 207 0 chr4 117607778 117607957 -38022163 - B3 SINE B2 0 216 1 1 1482 953 138 220 17 chr4 117608540 117608717 -38021403 + B3 SINE B2 1 213 -3 1 1482 1686 36 0 0 chr4 117608747 117608939 -38021181 + B2_Mm1a SINE B2 1 192 -1 1 1482 328 264 62 31 chr4 117609196 117609325 -38020795 + L1M4c LINE L1 28 160 -6224 1 1482 367 271 0 12 chr4 117609340 117609426 -38020694 + RSINE1 SINE B4 2 86 -79 1 1482 282 366 0 31 chr4 117609426 117609467 -38020653 + B3 SINE B2 1 123 -93 1 1482 257 275 0 81 chr4 117609427 117609514 -38020606 - B4A SINE B4 -195 97 18 1 1482 354 123 0 0 chr4 117609556 117609613 -38020507 + (CCA)n Simple_repeat Simple_repeat 1 57 0 1 1482 732 256 31 2 chr4 117610033 117610231 -38019889 + B3A SINE B2 1 202 -14 1 1482 468 0 0 0 chr4 117610250 117610302 -38019818 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1482 1256 41 0 0 chr4 117610572 117610718 -38019402 - B1_Mus2 SINE Alu 0 147 2 1 1482 882 172 28 0 chr4 117610733 117610878 -38019242 + B1_Mur3 SINE Alu 1 149 0 1 1482 240 111 0 0 chr4 117610912 117610948 -38019172 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1 1482 358 167 282 12 chr4 117611058 117611143 -38018977 - PB1D9 SINE Alu -11 109 2 1 1482 1198 62 71 38 chr4 117611160 117611344 -38018776 + B2_Mm2 SINE B2 2 191 -4 1 1482 219 69 0 0 chr4 117611368 117611397 -38018723 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 1 1482 1508 58 5 10 chr4 117611430 117611623 -38018497 + B2_Mm1t SINE B2 2 193 0 1 1482 416 273 62 0 chr4 117611677 117611805 -38018315 + RSINE1 SINE B4 24 159 -6 1 1482 419 217 104 0 chr4 117614082 117614188 -38015932 + RSINE1 SINE B4 16 132 -33 1 1482 282 106 0 0 chr4 117614243 117614290 -38015830 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1482 316 309 12 0 chr4 117614396 117614477 -38015643 - ID4 SINE ID 0 83 2 1 1482 563 212 0 81 chr4 117614662 117614785 -38015335 + PB1D10 SINE Alu 1 113 -4 1 1482 201 330 67 11 chr4 117616463 117616552 -38013568 - MIRc SINE MIR -164 104 11 1 1482 7777 63 0 9 chr4 117616583 117618120 -38012000 + L1_Mus1 LINE L1 5046 6567 0 1 1482 1055 205 52 33 chr4 117618910 117619122 -38010998 + B3 SINE B2 1 216 0 1 1482 603 323 58 5 chr4 117619208 117619432 -38010688 + MIRb SINE MIR 32 267 -1 1 1482 269 381 55 30 chr4 117620204 117620369 -38009751 + MIR SINE MIR 46 214 -48 1 1482 225 266 16 0 chr4 117620426 117620490 -38009630 + B3A SINE B2 1 65 -133 1 1482 352 238 0 12 chr4 117620481 117620566 -38009554 + BC1_Mm scRNA scRNA 14 97 -55 1 1482 283 265 203 8 chr4 117620580 117620713 -38009407 - MER115 DNA Tip100 -75 618 460 1 1482 854 162 0 27 chr4 117621070 117621216 -38008904 - B1_Mus1 SINE Alu -1 147 6 1 1482 1881 130 131 15 chr4 117621638 117621967 -38008153 + ORR1B2 LTR MaLR 1 367 0 1 1482 252 152 22 0 chr4 117622631 117622677 -38007443 + B1F SINE Alu 2 48 -101 1 1482 315 0 0 0 chr4 117622721 117622756 -38007364 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1482 259 149 0 56 chr4 117622762 117622833 -38007287 + GA-rich Low_complexity Low_complexity 2 68 0 1 1482 447 198 178 0 chr4 117622857 117622958 -38007162 + PB1D9 SINE Alu 2 120 0 1 1482 308 271 23 191 chr4 117622968 117623141 -38006979 + RSINE1 SINE B4 3 146 -19 1 1482 476 268 41 0 chr4 117623188 117623311 -38006809 + B1F SINE Alu 1 128 -21 1 1482 207 100 0 0 chr4 117623312 117623342 -38006778 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1482 240 309 179 0 chr4 117623963 117624086 -38006034 - MER5A DNA MER1_type -1 188 44 1 1482 272 246 192 17 chr4 117624559 117624679 -38005441 - RSINE1 SINE B4 -22 143 3 1 1482 800 218 299 4 chr4 117624892 117625173 -38004947 + ORR1D1 LTR MaLR 5 368 -6 1 1482 311 248 51 71 chr4 117625732 117625887 -38004233 + MIR SINE MIR 51 207 -55 1 1482 240 184 0 0 chr4 117625927 117625976 -38004144 + (ATG)n Simple_repeat Simple_repeat 1 49 0 1 1482 1433 64 21 0 chr4 117626233 117626421 -38003699 + B2_Mm1a SINE B2 1 192 -1 1 1482 213 39 0 0 chr4 117626423 117626449 -38003671 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1482 419 245 98 0 chr4 117627035 117627137 -38002983 + B1F SINE Alu 1 112 -37 1 1482 192 40 0 0 chr4 117627142 117627167 -38002953 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1482 206 400 0 0 chr4 117627834 117627944 -38002176 + L2c LINE L2 3276 3385 -2 1 1482 2003 128 53 0 chr4 117628688 117629009 -38001111 + ORR1C1 LTR MaLR 1 338 -40 1 1482 587 183 115 58 chr4 117629010 117629149 -38000971 + B1_Mm SINE Alu 1 147 0 1 1482 226 73 143 24 chr4 117629199 117629241 -38000879 + ORR1C1 LTR MaLR 330 376 -8 1 1482 1518 73 16 0 chr4 117631348 117631540 -37998580 + B2_Mm2 SINE B2 1 195 0 1 1482 777 87 78 16 chr4 117632079 117632207 -37997913 - B1_Mus2 SINE Alu 0 147 12 2 1482 298 256 120 120 chr4 117632207 117632268 -37997852 - B4 SINE B4 -66 224 36 2 1482 234 327 108 34 chr4 117633371 117633577 -37996543 + MIRb SINE MIR 9 228 -40 2 1482 771 164 14 0 chr4 117633586 117633732 -37996388 + URR1B DNA MER1_type 78 225 0 2 1482 357 24 0 0 chr4 117634060 117634102 -37996018 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1482 547 196 69 0 chr4 117634102 117634204 -37995916 - PB1D9 SINE Alu -7 113 5 2 1482 905 147 68 0 chr4 117634334 117634497 -37995623 - B3 SINE B2 -42 174 1 2 1482 218 363 70 9 chr4 117634556 117634670 -37995450 - B1_Mus1 SINE Alu -21 127 7 2 1482 745 269 5 11 chr4 117634572 117634756 -37995364 - ID_B1 SINE B4 -40 184 2 2 1482 1223 48 0 14 chr4 117634840 117634988 -37995132 + B1_Mus1 SINE Alu 2 147 -1 2 1482 252 111 15 31 chr4 117634994 117635059 -37995061 + (CAA)n Simple_repeat Simple_repeat 2 65 0 2 1482 550 220 0 33 chr4 117635135 117635257 -37994863 + PB1D9 SINE Alu 1 118 -2 2 1482 335 157 14 0 chr4 117635258 117635328 -37994792 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1482 240 288 73 39 chr4 117635939 117636069 -37994051 - MIRb SINE MIR -95 173 36 2 1482 324 83 0 0 chr4 117636254 117636302 -37993818 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1482 794 158 79 0 chr4 117636514 117636641 -37993479 - B1_Mur1 SINE Alu -8 141 5 2 1482 581 294 24 30 chr4 117636673 117636838 -37993282 - RSINE1 SINE B4 0 165 2 2 1482 187 31 30 30 chr4 117637710 117637743 -37992377 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2 1482 1052 165 47 16 chr4 117638852 117639043 -37991077 + B3A SINE B2 1 197 -1 2 1482 573 171 86 0 chr4 117639048 117639153 -37990967 - PB1D9 SINE Alu -5 115 2 2 1482 875 228 80 73 chr4 117639284 117639573 -37990547 - B4A SINE B4 -1 291 1 2 1482 726 192 0 0 chr4 117640303 117640433 -37989687 - RSINE1 SINE B4 -33 132 3 2 1482 236 163 23 0 chr4 117640596 117640639 -37989481 - L1MC5 LINE L1 -606 7355 7312 2 1482 368 348 74 80 chr4 117640732 117641235 -37988885 - L1MC5 LINE L1 -847 7114 6615 2 1482 403 226 3 21 chr4 117641396 117641498 -37988622 - B1F SINE Alu -2 147 58 2 1482 500 200 8 0 chr4 117641694 117641824 -37988296 + CT-rich Low_complexity Low_complexity 1 131 0 2 1482 227 291 0 35 chr4 117641839 117641896 -37988224 - PB1D7 SINE Alu -63 57 3 2 1482 476 221 18 44 chr4 117642025 117642182 -37987938 - B3 SINE B2 -2 193 46 2 1482 421 214 53 88 chr4 117642201 117642314 -37987806 - PB1D10 SINE Alu -7 110 2 2 1482 394 264 23 39 chr4 117642424 117642554 -37987566 - RSINE1 SINE B4 -21 144 17 2 1482 207 176 0 0 chr4 117643160 117643194 -37986926 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1482 438 216 0 0 chr4 117643930 117644055 -37986065 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 1482 258 295 0 0 chr4 117644086 117644242 -37985878 + (CA)n Simple_repeat Simple_repeat 2 157 0 2 1482 24 53 0 0 chr4 117644562 117644600 -37985520 + AT_rich Low_complexity Low_complexity 1 38 0 2 1482 1181 182 10 0 chr4 117644608 117644811 -37985309 + B3 SINE B2 2 206 -10 2 1482 231 36 0 0 chr4 117644827 117644855 -37985265 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1482 435 38 0 0 chr4 117644855 117644907 -37985213 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1482 630 262 62 0 chr4 117644907 117645052 -37985068 - RSINE1 SINE B4 -10 155 2 2 1482 221 375 63 35 chr4 117646166 117646183 -37983937 - B2_Mm1a SINE B2 -13 180 164 2 1482 567 78 0 0 chr4 117646183 117646260 -37983860 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1482 221 375 63 35 chr4 117646260 117646273 -37983847 - B2_Mm1a SINE B2 -30 163 3 2 1482 533 271 7 21 chr4 117646273 117646416 -37983704 - RSINE1 SINE B4 -22 143 3 2 1482 192 179 0 0 chr4 117647127 117647166 -37982954 + (CGGA)n Simple_repeat Simple_repeat 3 41 0 2 1482 207 162 0 0 chr4 117647690 117647727 -37982393 + GA-rich Low_complexity Low_complexity 3 39 0 2 1482 553 14 27 0 chr4 117648039 117648113 -37982007 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1482 851 260 5 33 chr4 117648131 117648342 -37981778 + B3 SINE B2 10 214 -2 2 1482 637 292 48 79 chr4 117648433 117648660 -37981460 + MER58A DNA MER1_type 2 221 -3 2 1482 853 282 9 35 chr4 117649125 117649277 -37980843 - B4 SINE B4 -62 230 81 2 1482 912 117 27 27 chr4 117649277 117649426 -37980694 - B1_Mur4 SINE Alu -1 149 1 2 1482 853 282 9 35 chr4 117649426 117649504 -37980616 - B4 SINE B4 -212 80 6 2 1482 263 270 56 112 chr4 117649947 117650072 -37980048 - L2a LINE L2 -38 3388 3271 2 1482 333 322 25 0 chr4 117650069 117650190 -37979930 - MIR SINE MIR -2 260 137 2 1482 277 305 33 17 chr4 117651024 117651144 -37978976 + L2a LINE L2 2560 2681 -738 2 1482 289 358 76 44 chr4 117651833 117652149 -37977971 + L2a LINE L2 2994 3319 -107 2 1482 24 0 0 0 chr4 117653217 117653241 -37976879 + AT_rich Low_complexity Low_complexity 1 24 0 2 1482 1152 81 0 20 chr4 117653462 117653614 -37976506 - B1_Mur2 SINE Alu 0 149 1 2 1482 248 293 0 0 chr4 117653669 117653727 -37976393 - ID4_ SINE ID -16 67 10 2 1482 554 120 44 15 chr4 117654131 117654266 -37975854 + CT-rich Low_complexity Low_complexity 3 141 0 2 1482 262 273 79 74 chr4 117655197 117655399 -37974721 + L2c LINE L2 3185 3387 0 2 1482 275 237 0 0 chr4 117655885 117655944 -37974176 - ID_B1 SINE B4 0 224 166 2 1482 320 282 116 33 chr4 117656066 117656187 -37973933 - B4A SINE B4 -161 131 1 2 1482 446 173 54 71 chr4 117656284 117656396 -37973724 - PB1D9 SINE Alu -1 119 10 2 1482 586 279 16 104 chr4 117656305 117656497 -37973623 - ID_B1 SINE B4 -48 176 2 2 1482 331 264 0 0 chr4 117656843 117656915 -37973205 + ID4_ SINE ID 12 83 0 2 1482 1086 214 80 135 chr4 117656927 117657326 -37972794 + MTE2a LTR MaLR 1 377 -2 2 1482 182 344 65 0 chr4 117657553 117657646 -37972474 + L3 LINE CR1 4162 4260 -229 2 1482 204 179 0 49 chr4 117657914 117657955 -37972165 + polypurine Low_complexity Low_complexity 2 40 0 2 1482 189 0 0 0 chr4 117658960 117658981 -37971139 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2 1482 2495 122 13 8 chr4 117658981 117659370 -37970750 - Lx2 LINE L1 -7 6990 6600 2 1482 460 271 0 39 chr4 117659422 117659549 -37970571 - B3A SINE B2 -73 125 4 2 1482 1349 225 58 10 chr4 117659557 117660042 -37970078 + RCHARR1 DNA MER1_type 347 897 -77 2 1482 289 123 15 15 chr4 117660106 117660172 -37969948 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1482 743 219 17 75 chr4 117660178 117660351 -37969769 - RSINE1 SINE B4 0 165 3 2 1482 246 245 0 0 chr4 117660380 117660429 -37969691 - RSINE1 SINE B4 -114 51 3 2 1482 450 224 157 44 chr4 117662070 117662229 -37967891 - B3 SINE B2 0 216 40 2 1482 1312 302 104 44 chr4 117662262 117663130 -37966990 - L1MA4 LINE L1 -17 7143 6224 2 1482 383 269 18 44 chr4 117663166 117663279 -37966841 - PB1D10 SINE Alu -3 114 5 2 1482 488 173 54 18 chr4 117663302 117663414 -37966706 - PB1D10 SINE Alu -1 116 1 2 1482 539 228 97 8 chr4 117663441 117663565 -37966555 + RSINE1 SINE B4 2 136 -29 2 1482 1246 298 105 37 chr4 117663596 117664167 -37965953 - L1MA4 LINE L1 -789 6214 5605 2 1482 748 144 8 17 chr4 117664172 117664292 -37965828 - PB1D9 SINE Alu 0 120 2 2 1482 307 303 81 29 chr4 117664441 117664577 -37965543 - L1MA4 LINE L1 -5616 1718 1576 2 1482 400 279 61 0 chr4 117665338 117665474 -37964646 - B1F SINE Alu -1 147 5 2 1482 685 188 0 25 chr4 117665991 117666111 -37964009 - PB1D10 SINE Alu 0 117 1 2 1482 213 39 0 0 chr4 117666580 117666606 -37963514 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1482 377 253 0 0 chr4 117666610 117666701 -37963419 + RSINE1 SINE B4 3 93 -72 2 1482 252 0 0 0 chr4 117666724 117666752 -37963368 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2 1482 1198 82 0 0 chr4 117667870 117668017 -37962103 - B1_Mus2 SINE Alu 0 147 1 2 1482 460 265 36 36 chr4 117668020 117668157 -37961963 - MIRb SINE MIR -113 155 19 2 1482 1038 62 0 0 chr4 117668943 117669072 -37961048 + B1_Mus2 SINE Alu 19 147 0 2 1482 527 269 27 14 chr4 117669818 117669941 -37960179 - B1F SINE Alu -1 119 1 2 1482 437 318 15 31 chr4 117669831 117669961 -37960159 - ID_B1 SINE B4 -34 190 63 2 1482 693 24 0 0 chr4 117671864 117671947 -37958173 + (CAGG)n Simple_repeat Simple_repeat 1 83 0 2 1482 195 238 73 144 chr4 117672176 117672317 -37957803 + MIRm SINE MIR 112 261 -7 2 1482 196 258 15 0 chr4 117672690 117672756 -37957364 - L2 LINE L2 -977 2442 2376 2 1482 600 292 14 7 chr4 117673720 117673868 -37956252 + B1F SINE Alu 1 149 0 2 1482 269 348 29 29 chr4 117673910 117674046 -37956074 + MIRb SINE MIR 92 227 -41 2 1482 637 243 20 27 chr4 117674234 117674382 -37955738 + B3A SINE B2 3 149 -49 2 1482 369 0 0 0 chr4 117674384 117674425 -37955695 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1482 191 309 107 0 chr4 117674807 117674891 -37955229 - MIRb SINE MIR -160 108 16 2 1482 1208 189 24 32 chr4 117675038 117675290 -37954830 + Lx7 LINE L1 6833 7082 -614 2 1482 275 241 0 0 chr4 117675292 117675350 -37954770 + MTE2b LTR MaLR 322 379 0 2 1482 491 309 126 19 chr4 117675382 117675643 -37954477 + L1MC4a LINE L1 5546 5834 -2048 2 1482 496 211 122 0 chr4 117675643 117675766 -37954354 + ID_B1 SINE B4 87 224 0 2 1482 450 305 152 54 chr4 117675773 117676459 -37953661 + L1MEc LINE L1 32 784 -5616 2 1482 9781 44 1 0 chr4 117676527 117677867 -37952253 - L1Md_F3 LINE L1 -606 5978 4638 2 1482 4917 46 5 3 chr4 117677867 117678460 -37951660 + L1Md_F3 LINE L1 5991 6584 0 2 1482 1069 207 106 62 chr4 117678498 117678771 -37951349 - ORR1D1 LTR MaLR 0 374 90 2 1482 5202 62 2 6 chr4 117678771 117679753 -37950367 - L1_Mus2 LINE L1 -426 6140 5166 2 1482 3690 51 4 2 chr4 117679753 117680208 -37949912 + L1_Mus2 LINE L1 6111 6566 0 2 1482 356 127 191 0 chr4 117680237 117680300 -37949820 - ORR1D1 LTR MaLR -270 104 30 2 1482 599 189 8 0 chr4 117680342 117680469 -37949651 + GA-rich Low_complexity Low_complexity 2 129 0 3 1482 281 288 0 0 chr4 117681049 117681115 -37949005 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1482 1342 297 102 16 chr4 117681171 117681781 -37948339 - L1MB3 LINE L1 -264 5919 5258 3 1482 607 272 52 85 chr4 117681922 117682324 -37947796 + L1MEc LINE L1 2074 2462 -3938 2 1482 246 254 213 25 chr4 117682604 117682806 -37947314 + L1MEc LINE L1 2711 2950 -3369 2 1482 535 309 43 43 chr4 117683289 117683522 -37946598 + MER21B LTR ERV1 41 273 -590 3 1482 572 246 28 21 chr4 117683590 117683735 -37946385 + RSINE1 SINE B4 1 146 -19 3 1482 21 0 0 0 chr4 117683767 117683788 -37946332 + AT_rich Low_complexity Low_complexity 1 21 0 3 1482 270 73 0 0 chr4 117683958 117683999 -37946121 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1482 451 291 75 22 chr4 117684040 117684268 -37945852 + L1ME1 LINE L1 4918 5157 -989 3 1482 554 329 64 62 chr4 117684333 117684878 -37945242 + L1ME1 LINE L1 5505 6050 -129 3 1482 300 229 57 176 chr4 117684979 117685097 -37945023 + B4 SINE B4 103 215 -77 3 1482 1124 104 12 0 chr4 117685097 117685270 -37944850 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 3 1482 300 229 57 176 chr4 117685278 117685310 -37944810 + B4 SINE B4 216 242 -50 3 1482 402 250 47 0 chr4 117685313 117685485 -37944635 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1482 2215 206 83 24 chr4 117686228 117686761 -37943359 + RLTR12A LTR ERVK 1 564 -4 3 1482 243 312 97 0 chr4 117688935 117689028 -37941092 - MIRb SINE MIR -81 187 86 3 1482 238 196 0 61 chr4 117690474 117690523 -37939597 + B1F SINE Alu 102 147 -2 3 1482 244 272 8 58 chr4 117690681 117690802 -37939318 + G-rich Low_complexity Low_complexity 4 118 0 3 1482 231 103 0 0 chr4 117691796 117691835 -37938285 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1482 596 291 60 6 chr4 117692485 117692668 -37937452 + FordPrefect DNA Tip100 998 1190 -493 3 1482 469 288 102 0 chr4 117693067 117693185 -37936935 - RSINE1 SINE B4 -35 130 1 3 1482 27 0 0 0 chr4 117693193 117693220 -37936900 + AT_rich Low_complexity Low_complexity 1 27 0 3 1482 667 217 122 26 chr4 117693220 117693376 -37936744 - B3 SINE B2 -6 210 40 3 1482 965 186 112 0 chr4 117694039 117694227 -37935893 + B3 SINE B2 2 210 -6 3 1482 381 93 0 0 chr4 117694621 117694675 -37935445 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 3 1482 690 75 0 0 chr4 117694675 117694781 -37935339 + (CA)n Simple_repeat Simple_repeat 2 107 0 3 1482 299 275 0 0 chr4 117694857 117694926 -37935194 - B3A SINE B2 -128 70 2 3 1482 493 191 17 0 chr4 117694927 117695042 -37935078 - L1M LINE L1 -2415 5370 5254 3 1482 569 314 34 23 chr4 117695333 117695509 -37934611 + MER5B DNA MER1_type 1 178 0 3 1482 405 238 119 113 chr4 117695696 117695989 -37934131 + L1MA6 LINE L1 5898 6192 -108 3 1482 747 108 0 0 chr4 117696354 117696465 -37933655 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 3 1482 258 327 36 45 chr4 117696552 117696664 -37933456 - L2b LINE L2 -8 3367 3257 3 1482 3440 119 157 56 chr4 117696674 117697357 -37932763 + RMER6A LTR ERVK 1 752 -4 3 1482 905 190 119 10 chr4 117697421 117697623 -37932497 + MTD LTR MaLR 196 419 0 3 1482 283 330 0 11 chr4 117697674 117697766 -37932354 + B4 SINE B4 79 169 -123 3 1482 667 149 0 9 chr4 117697692 117697800 -37932320 + PB1D9 SINE Alu 11 117 -3 3 1482 242 0 61 0 chr4 117697800 117697833 -37932287 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1482 183 308 58 0 chr4 117698010 117698062 -37932058 - L2c LINE L2 -1 3386 3332 3 1482 310 310 79 46 chr4 117698179 117698419 -37931701 + RLTR12B LTR ERVK 256 503 -25 3 1482 639 292 124 14 chr4 117698462 117698810 -37931310 - L2b LINE L2 -738 2681 2296 3 1482 411 286 9 9 chr4 117699008 117699114 -37931006 - PB1D10 SINE Alu -11 106 1 3 1482 505 289 47 59 chr4 117699713 117699882 -37930238 - B3A SINE B2 -9 189 23 3 1482 281 299 215 4 chr4 117700225 117700453 -37929667 + L2 LINE L2 276 551 -2868 3 1482 213 94 0 0 chr4 117700613 117700645 -37929475 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1482 753 165 181 40 chr4 117700832 117701009 -37929111 + B3 SINE B2 15 216 0 3 1482 225 0 0 0 chr4 117701072 117701097 -37929023 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1482 1215 54 7 0 chr4 117701105 117701252 -37928868 - B1_Mus1 SINE Alu 0 148 1 3 1482 588 252 69 14 chr4 117701294 117701439 -37928681 - RSINE1 SINE B4 -10 155 3 3 1482 238 286 76 11 chr4 117701686 117701778 -37928342 - L1MEd LINE L1 -5490 629 532 3 1482 180 111 0 0 chr4 117701784 117701811 -37928309 + (CGAG)n Simple_repeat Simple_repeat 1 27 0 3 1482 363 315 90 42 chr4 117701983 117702195 -37927925 + L1MEg LINE L1 945 1166 -4918 3 1482 369 322 66 14 chr4 117702221 117702395 -37927725 - MIRb SINE MIR -63 205 18 3 1483 729 88 0 46 chr4 117703415 117703546 -37926574 + (CCCA)n Simple_repeat Simple_repeat 4 128 0 3 1483 513 253 70 21 chr4 117703647 117703833 -37926287 - MIR SINE MIR -50 212 18 3 1483 369 0 0 0 chr4 117704077 117704118 -37926002 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1483 563 304 138 29 chr4 117704888 117705098 -37925022 + MTD LTR MaLR 5 237 -182 3 1483 964 221 74 67 chr4 117705135 117705405 -37924715 - B4A SINE B4 0 292 23 3 1483 448 234 8 59 chr4 117705948 117706066 -37924054 + PB1D10 SINE Alu 1 112 -5 3 1483 361 215 15 0 chr4 117706076 117706141 -37923979 + ID4_ SINE ID 2 67 -16 3 1483 677 113 112 9 chr4 117706160 117706276 -37923844 - B1_Mur4 SINE Alu -1 149 22 3 1483 294 321 47 75 chr4 117706166 117706395 -37923725 - B4 SINE B4 -72 220 2 3 1483 321 169 0 0 chr4 117706547 117706606 -37923514 + CT-rich Low_complexity Low_complexity 4 62 0 3 1483 1070 96 7 0 chr4 117706638 117706784 -37923336 - B1_Mus1 SINE Alu -1 147 1 3 1483 1374 264 62 11 chr4 117706855 117707212 -37922908 - MTE2b LTR MaLR -1 378 4 3 1483 351 0 0 0 chr4 117707297 117707336 -37922784 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1483 226 324 14 14 chr4 117707399 117707468 -37922652 - ID SINE ID -148 76 8 3 1483 1029 182 11 0 chr4 117707844 117708020 -37922100 - B3A SINE B2 -20 178 1 3 1483 662 185 235 55 chr4 117708130 117708313 -37921807 + B3 SINE B2 1 216 0 3 1483 1023 144 168 16 chr4 117708823 117709014 -37921106 - URR1B DNA MER1_type -5 220 1 3 1483 247 45 0 64 chr4 117709164 117709211 -37920909 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1483 592 175 94 8 chr4 117709211 117709338 -37920782 - B1_Mur1 SINE Alu -11 138 1 3 1483 260 290 305 5 chr4 117709362 117709549 -37920571 + LTR78 LTR ERV1 1057 1299 -5 3 1483 250 132 0 36 chr4 117710409 117710464 -37919656 + GA-rich Low_complexity Low_complexity 3 55 0 3 1483 333 244 173 86 chr4 117710483 117710842 -37919278 - L1MEc LINE L1 -5078 1322 933 3 1483 1136 112 3 9 chr4 117710883 117711197 -37918923 + (CA)n Simple_repeat Simple_repeat 1 312 0 3 1483 231 298 44 80 chr4 117711216 117711300 -37918820 - L1MEc LINE L1 -5545 855 776 3 1483 1145 79 0 0 chr4 117711300 117711439 -37918681 + B1_Mus1 SINE Alu 1 139 -9 3 1483 350 21 0 21 chr4 117711439 117711487 -37918633 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1483 231 298 44 80 chr4 117711487 117711627 -37918493 - L1MEc LINE L1 -5625 775 639 3 1483 1202 120 16 5 chr4 117712393 117712577 -37917543 + B2_Mm2 SINE B2 9 194 -1 3 1483 405 0 0 0 chr4 117712636 117712681 -37917439 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1483 318 247 41 0 chr4 117712695 117712768 -37917352 + L2b LINE L2 3297 3372 -3 3 1483 638 291 70 5 chr4 117714303 117714501 -37915619 - Charlie1a DNA MER1_type -950 505 294 3 1483 334 225 25 0 chr4 117714501 117714581 -37915539 + ID4_ SINE ID 2 83 0 3 1483 638 291 70 5 chr4 117714581 117714596 -37915524 - Charlie1a DNA MER1_type -1162 293 279 3 1483 1339 72 33 11 chr4 117714605 117714787 -37915333 + B2_Mm2 SINE B2 1 186 -9 3 1483 338 0 24 0 chr4 117714787 117714829 -37915291 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1483 549 195 107 25 chr4 117714883 117714990 -37915130 + B1_Mur1 SINE Alu 19 138 -11 3 1483 1238 48 0 0 chr4 117714990 117715136 -37914984 + B1_Mus2 SINE Alu 1 146 -1 3 1483 549 195 107 25 chr4 117715136 117715149 -37914971 + B1_Mur1 SINE Alu 139 149 0 3 1483 239 183 17 0 chr4 117715151 117715211 -37914909 + A-rich Low_complexity Low_complexity 1 61 0 3 1483 198 0 0 0 chr4 117715338 117715360 -37914760 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1483 965 179 38 0 chr4 117715373 117715557 -37914563 + RLTR40 LTR ERVK 1 191 -626 3 1483 751 254 39 12 chr4 117715554 117715764 -37914356 - B3A SINE B2 0 216 1 3 1483 318 181 0 89 chr4 117715777 117715856 -37914264 + RLTR40 LTR ERVK 199 270 -547 3 1483 1241 239 110 0 chr4 117716068 117716394 -37913726 + ORR1D2 LTR MaLR 6 367 -3 3 1483 710 189 14 9 chr4 117716626 117716762 -37913358 - B1_Mur1 SINE Alu -5 144 11 3 1483 720 281 83 53 chr4 117717913 117718251 -37911869 + MLT1A0 LTR MaLR 16 363 -2 3 1483 521 215 61 15 chr4 117718337 117718469 -37911651 + RSINE1 SINE B4 3 140 -25 3 1483 237 65 0 0 chr4 117718475 117718506 -37911614 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1483 23 0 0 0 chr4 117718518 117718541 -37911579 + AT_rich Low_complexity Low_complexity 1 23 0 3 1483 1489 79 0 0 chr4 117718547 117718736 -37911384 + B2_Mm2 SINE B2 1 189 -6 3 1483 315 228 272 0 chr4 117718997 117719089 -37911031 - PB1D10 SINE Alu 0 117 1 3 1483 696 235 0 51 chr4 117719097 117719254 -37910866 - B1_Mur3 SINE Alu 0 149 1 3 1483 28 0 0 0 chr4 117719332 117719360 -37910760 + AT_rich Low_complexity Low_complexity 1 28 0 3 1483 1329 74 17 11 chr4 117719363 117719540 -37910580 + B2_Mm2 SINE B2 4 181 -14 3 1483 252 0 0 0 chr4 117719550 117719578 -37910542 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1483 1106 103 0 0 chr4 117719578 117719715 -37910405 - B1_Mus1 SINE Alu -9 139 3 3 1483 508 250 60 46 chr4 117719751 117719902 -37910218 - RSINE1 SINE B4 -11 154 2 3 1483 193 244 0 0 chr4 117720160 117720205 -37909915 - MIRm SINE MIR -10 266 222 3 1483 273 264 95 54 chr4 117720404 117720572 -37909548 - L2 LINE L2 -353 3066 2892 4 1483 371 352 85 69 chr4 117720935 117721396 -37908724 - L1MD2 LINE L1 -1793 4751 4284 4 1483 24 0 0 0 chr4 117721398 117721422 -37908698 + AT_rich Low_complexity Low_complexity 1 24 0 4 1483 1306 101 17 0 chr4 117721426 117721604 -37908516 - B2_Mm2 SINE B2 -14 181 1 4 1483 490 272 83 4 chr4 117721604 117721844 -37908276 - L1MD2 LINE L1 -5517 1123 867 4 1483 792 285 181 52 chr4 117721913 117722553 -37907567 - L1MD2 LINE L1 -5805 742 20 4 1483 426 243 73 51 chr4 117722964 117723142 -37906978 + B3A SINE B2 1 182 -16 4 1483 21 36 0 0 chr4 117723145 117723173 -37906947 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 1966 190 45 25 chr4 117723294 117723698 -37906422 + MTC LTR MaLR 10 421 0 4 1483 305 367 11 0 chr4 117723818 117723952 -37906168 + MIR SINE MIR 2 138 -130 4 1483 461 62 0 15 chr4 117724027 117724093 -37906027 + (TCC)n Simple_repeat Simple_repeat 3 67 0 4 1483 281 305 0 0 chr4 117724474 117724533 -37905587 + ID4_ SINE ID 22 80 -3 4 1483 433 268 0 80 chr4 117724581 117724731 -37905389 + B1F1 SINE Alu 5 142 -7 4 1483 325 231 109 55 chr4 117724731 117724841 -37905279 + B1F2 SINE Alu 2 117 -32 4 1483 219 196 20 0 chr4 117724884 117724935 -37905185 + A-rich Low_complexity Low_complexity 2 53 0 4 1483 378 91 0 0 chr4 117725154 117725209 -37904911 + (GGGGA)n Simple_repeat Simple_repeat 5 59 0 4 1483 319 301 141 22 chr4 117725319 117725776 -37904344 - L1M5 LINE L1 -541 5632 5125 4 1483 1261 54 0 0 chr4 117726058 117726205 -37903915 + B1_Mm SINE Alu 1 147 0 4 1483 366 181 28 0 chr4 117726979 117727051 -37903069 - B1_Mur1 SINE Alu -32 117 44 4 1483 198 217 100 0 chr4 117727618 117727678 -37902442 - L4 LINE RTE -207 1822 1757 4 1483 219 380 40 78 chr4 117727696 117728093 -37902027 - L2b LINE L2 -2 3373 2992 4 1483 3559 23 2 0 chr4 117728134 117728529 -37901591 - MTA_Mm LTR MaLR 0 396 1 4 1483 541 317 71 24 chr4 117729347 117729602 -37900518 + B4A SINE B4 2 268 -24 4 1483 189 74 0 0 chr4 117729607 117729634 -37900486 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1483 21 0 0 0 chr4 117729642 117729663 -37900457 + AT_rich Low_complexity Low_complexity 1 21 0 4 1483 263 225 82 27 chr4 117729902 117729975 -37900145 + AluG_3 SINE Alu 137 213 -98 4 1483 420 20 0 0 chr4 117729977 117730026 -37900094 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1483 414 0 0 0 chr4 117730026 117730071 -37900049 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1483 235 237 34 0 chr4 117730319 117730378 -37899742 - ID4_ SINE ID -8 75 15 4 1483 218 301 14 0 chr4 117730378 117730392 -37899728 - ID SINE ID -148 76 3 4 1483 1025 181 53 10 chr4 117731837 117732043 -37898077 - B3 SINE B2 0 216 2 4 1483 1089 216 0 5 chr4 117732044 117732244 -37897876 - B3 SINE B2 -17 199 1 4 1483 210 37 0 0 chr4 117732260 117732287 -37897833 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 4 1483 1107 221 33 0 chr4 117733200 117733413 -37896707 - ID_B1 SINE B4 -2 222 3 4 1483 735 44 0 0 chr4 117733431 117733522 -37896598 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 4 1483 1124 114 74 6 chr4 117733522 117733689 -37896431 - B2_Mm2 SINE B2 -15 180 2 4 1483 279 221 145 14 chr4 117734165 117734234 -37895886 + B4 SINE B4 7 84 -208 4 1483 279 175 325 53 chr4 117734636 117734787 -37895333 + CR1_Mam LINE CR1 1157 1348 -856 4 1483 687 262 134 23 chr4 117735436 117735698 -37894422 - B4 SINE B4 0 292 2 4 1483 423 300 124 27 chr4 117735703 117735888 -37894232 - MER46C DNA MER2_type -56 282 80 4 1483 1729 21 0 0 chr4 117735889 117736081 -37894039 - B2_Mm1a SINE B2 0 193 2 4 1483 638 262 6 75 chr4 117736128 117736301 -37893819 + RSINE1 SINE B4 3 163 -2 4 1483 210 296 0 0 chr4 117736303 117736357 -37893763 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1483 250 298 127 66 chr4 117737553 117737858 -37892262 + MTE2a LTR MaLR 48 374 -5 4 1483 269 286 57 0 chr4 117738072 117738142 -37891978 - MER58C DNA MER1_type -2 213 140 4 1483 544 291 50 11 chr4 117738158 117738339 -37891781 + B3A SINE B2 1 188 -10 4 1483 451 249 196 70 chr4 117738348 117738493 -37891627 + HAL1 LINE L1 1072 1214 -1293 4 1483 1100 38 217 0 chr4 117738493 117738650 -37891470 + B2_Mm2 SINE B2 1 191 -4 4 1483 451 249 196 70 chr4 117738650 117738733 -37891387 + HAL1 LINE L1 1215 1328 -1179 4 1483 231 103 0 0 chr4 117738740 117738779 -37891341 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 1483 544 244 24 24 chr4 117738809 117738935 -37891185 + B4A SINE B4 1 126 -166 4 1483 550 139 0 44 chr4 117738951 117739041 -37891079 + MT2A LTR ERVL 3 88 -445 4 1483 987 130 14 0 chr4 117739056 117739202 -37890918 - B1_Mur4 SINE Alu 0 150 3 4 1483 268 186 0 0 chr4 117739210 117739253 -37890867 + MT2A LTR ERVL 82 124 -409 4 1483 1186 209 0 9 chr4 117739259 117739471 -37890649 - B3 SINE B2 -5 211 2 4 1483 850 142 12 104 chr4 117739477 117739566 -37890554 + URR1A DNA MER1_type 70 157 -69 4 1483 1293 73 11 27 chr4 117739566 117739750 -37890370 + B2_Mm2 SINE B2 1 181 -14 4 1483 186 43 0 0 chr4 117739753 117739776 -37890344 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1483 850 142 12 104 chr4 117739776 117739855 -37890265 + URR1A DNA MER1_type 158 226 0 4 1483 281 202 116 11 chr4 117739855 117739941 -37890179 + MT2A LTR ERVL 438 533 0 4 1483 461 267 60 172 chr4 117739941 117740075 -37890045 + L1MB8 LINE L1 5610 5725 -453 4 1483 1280 34 0 0 chr4 117740075 117740221 -37889899 + B1_Mus2 SINE Alu 2 147 0 4 1483 461 267 60 172 chr4 117740221 117740488 -37889632 + L1MB8 LINE L1 5726 5966 -212 4 1483 450 120 0 0 chr4 117740533 117740608 -37889512 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1483 390 74 0 0 chr4 117740946 117741000 -37889120 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1483 433 267 30 30 chr4 117741052 117741187 -37888933 - RSINE1 SINE B4 0 165 31 4 1483 719 286 22 6 chr4 117741259 117741438 -37888682 - B3A SINE B2 -16 182 1 4 1483 304 307 71 87 chr4 117741478 117741500 -37888620 - B4A SINE B4 -46 246 201 4 1483 576 197 75 15 chr4 117741500 117741634 -37888486 - B1_Mus2 SINE Alu 0 147 6 4 1483 304 307 71 87 chr4 117741634 117741722 -37888398 - B4A SINE B4 -46 200 6 4 1483 462 398 15 37 chr4 117741723 117742049 -37888071 - L1M5 LINE L1 -413 5766 5448 4 1483 302 274 85 0 chr4 117742082 117742188 -37887932 + L1MB8 LINE L1 6062 6176 -8 4 1483 225 310 165 12 chr4 117742195 117742280 -37887840 + B1_Mus2 SINE Alu 20 117 -30 4 1483 240 300 100 0 chr4 117742215 117742295 -37887825 + ID_B1 SINE B4 133 220 -4 4 1483 269 206 68 14 chr4 117742312 117742386 -37887734 + ID2 SINE ID 3 80 -3 4 1483 748 211 13 142 chr4 117742556 117742782 -37887338 + B3A SINE B2 1 197 -1 4 1483 247 218 54 18 chr4 117742791 117742847 -37887273 + LTR83 LTR ERVL 719 776 -4 4 1483 364 288 96 0 chr4 117742873 117742998 -37887122 + Charlie8 DNA MER1_type 2 138 -2290 4 1483 1377 291 33 67 chr4 117743368 117743828 -37886292 + MER44B DNA MER2_type 1 444 -106 4 1483 1207 95 6 0 chr4 117743807 117743975 -37886145 - B2_Mm1t SINE B2 -23 170 2 4 1483 468 183 46 115 chr4 117743975 117744105 -37886015 + MER44B DNA MER2_type 388 508 -42 4 1483 564 183 69 9 chr4 117745236 117745352 -37884768 + ID_B1 SINE B4 82 204 -20 4 1483 224 269 0 0 chr4 117745529 117745581 -37884539 + ID2 SINE ID 32 83 0 4 1483 294 273 0 0 chr4 117745912 117745978 -37884142 - ID4 SINE ID -12 71 6 4 1483 532 275 15 8 chr4 117746003 117746135 -37883985 + B3 SINE B2 81 213 -3 4 1483 952 178 61 0 chr4 117746944 117747107 -37883013 + B3 SINE B2 33 205 -11 4 1483 1564 39 0 0 chr4 117747136 117747315 -37882805 + B2_Mm1a SINE B2 1 179 -14 4 1483 284 246 43 14 chr4 117747428 117747498 -37882622 - ID_B1 SINE B4 0 224 153 4 1483 1645 36 0 20 chr4 117747504 117747700 -37882420 + B2_Mm1t SINE B2 2 193 0 4 1483 1065 51 66 0 chr4 117747715 117747852 -37882268 + B1_Mus2 SINE Alu 2 147 0 4 1483 288 0 0 0 chr4 117747852 117747884 -37882236 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1483 727 291 6 0 chr4 117747884 117748042 -37882078 - ID_B1 SINE B4 -63 161 3 4 1483 344 119 0 17 chr4 117748560 117748620 -37881500 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1483 320 318 161 6 chr4 117748625 117748799 -37881321 - B4A SINE B4 -91 201 1 4 1483 759 159 114 0 chr4 117748931 117749063 -37881057 + B1_Mur1 SINE Alu 1 147 -2 4 1483 221 357 26 9 chr4 117749068 117749181 -37880939 + (TATATG)n Simple_repeat Simple_repeat 5 119 0 4 1483 1764 160 19 221 chr4 117749206 117749721 -37880399 - MTD LTR MaLR -8 411 1 4 1483 1026 65 64 14 chr4 117749750 117749891 -37880229 + B1_Mus1 SINE Alu 1 148 0 4 1483 210 71 0 0 chr4 117749891 117749919 -37880201 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1483 679 230 33 54 chr4 117749919 117750103 -37880017 - B4A SINE B4 -77 215 36 4 1483 928 178 11 48 chr4 117750439 117750628 -37879492 - B3A SINE B2 -15 183 2 4 1483 823 186 81 0 chr4 117750648 117750820 -37879300 - B3 SINE B2 0 216 31 4 1483 431 279 0 0 chr4 117750835 117750921 -37879199 - PB1D10 SINE Alu -27 90 5 4 1483 281 292 15 0 chr4 117750864 117750929 -37879191 - B4A SINE B4 -146 146 81 4 1483 272 284 88 6 chr4 117750959 117751129 -37878991 - L1M5 LINE L1 -3110 3036 2853 4 1483 511 243 0 59 chr4 117752622 117752740 -37877380 + ID_B1 SINE B4 109 219 -5 4 1483 246 220 0 0 chr4 117752819 117752878 -37877242 + CT-rich Low_complexity Low_complexity 3 61 0 4 1483 233 315 0 0 chr4 117753366 117753439 -37876681 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1483 21 36 0 0 chr4 117753497 117753525 -37876595 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 249 256 108 12 chr4 117753856 117753939 -37876181 + B4A SINE B4 64 154 -138 4 1483 457 266 24 8 chr4 117754307 117754432 -37875688 + B1_Mur1 SINE Alu 1 127 -22 4 1483 522 253 196 14 chr4 117754416 117754564 -37875556 - ID_B1 SINE B4 -48 176 2 5 1483 370 368 137 39 chr4 117754673 117755060 -37875060 + LTR16A LTR ERVL 7 431 -20 5 1483 393 306 57 8 chr4 117755364 117755486 -37874634 + B4 SINE B4 70 197 -95 5 1483 830 169 0 14 chr4 117755390 117755528 -37874592 + B1_Mur2 SINE Alu 13 148 -1 5 1483 1425 86 0 5 chr4 117755595 117755782 -37874338 - B2_Mm2 SINE B2 -8 187 2 5 1483 583 267 27 0 chr4 117755843 117755989 -37874131 - RSINE1 SINE B4 0 165 16 5 1483 302 351 98 12 chr4 117756729 117756902 -37873218 - L1MC4a LINE L1 -1987 5895 5708 5 1483 552 192 372 0 chr4 117756915 117757071 -37873049 + B3 SINE B2 3 216 0 5 1483 339 167 33 0 chr4 117757203 117757263 -37872857 + HAL1-3A_ME LINE L1 1966 2027 -831 5 1483 288 172 0 0 chr4 117757265 117757323 -37872797 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1483 183 184 0 0 chr4 117757397 117757435 -37872685 + CT-rich Low_complexity Low_complexity 2 39 0 5 1483 303 85 0 0 chr4 117757479 117757526 -37872594 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1483 737 244 119 0 chr4 117757929 117757990 -37872130 + B3 SINE B2 1 61 -155 5 1483 486 33 0 0 chr4 117757990 117758050 -37872070 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1483 737 244 119 0 chr4 117758050 117758181 -37871939 + B3 SINE B2 62 214 -2 5 1483 844 102 172 37 chr4 117758224 117758387 -37871733 - B2_Mm2 SINE B2 -8 187 3 5 1483 279 0 0 0 chr4 117758605 117758636 -37871484 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1483 243 250 14 14 chr4 117758872 117758941 -37871179 - B3A SINE B2 -128 70 2 5 1483 253 333 49 13 chr4 117758981 117759078 -37871042 + B1F SINE Alu 1 105 -12 5 1483 813 222 82 0 chr4 117759198 117759369 -37870751 + B3A SINE B2 1 185 -13 5 1483 486 206 22 0 chr4 117759393 117759485 -37870635 + B1_Mur3 SINE Alu 10 103 -46 5 1483 186 43 0 0 chr4 117759485 117759508 -37870612 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1483 237 200 167 83 chr4 117759513 117759575 -37870545 + B3 SINE B2 86 146 -70 5 1483 1969 155 15 85 chr4 117759575 117759976 -37870144 + ORR1D1 LTR MaLR 1 373 -1 5 1483 237 200 167 83 chr4 117759976 117760033 -37870087 + B3 SINE B2 147 215 -1 5 1483 1000 155 0 7 chr4 117760044 117760193 -37869927 + B1_Mur2 SINE Alu 1 148 -1 5 1483 355 292 68 43 chr4 117760225 117760386 -37869734 - MER47A DNA MER2_type -136 230 66 5 1483 312 265 22 203 chr4 117760483 117760715 -37869405 + MTEb LTR MaLR 177 366 -13 5 1483 655 281 92 43 chr4 117761399 117761681 -37868439 - Charlie1a DNA MER1_type -750 705 410 5 1483 338 218 0 141 chr4 117762147 117762275 -37867845 + MT2B LTR ERVL 155 264 -337 5 1483 943 129 7 0 chr4 117762169 117762309 -37867811 + B1_Mur4 SINE Alu 9 149 -1 5 1483 279 290 109 44 chr4 117762309 117762446 -37867674 - Charlie1a DNA MER1_type -1223 232 87 5 1483 623 291 51 14 chr4 117762630 117762842 -37867278 - B3A SINE B2 -5 211 1 5 1483 385 347 62 71 chr4 117762842 117763180 -37866940 - L1MEe LINE L1 -4145 709 375 5 1483 1214 285 97 15 chr4 117763528 117764190 -37865930 - L1ME1 LINE L1 -208 5971 5256 5 1483 489 62 0 0 chr4 117764283 117764348 -37865772 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1483 661 201 205 13 chr4 117764362 117764518 -37865602 + B3 SINE B2 1 186 -30 5 1483 760 179 34 31 chr4 117764518 117764696 -37865424 - B3 SINE B2 -4 191 1 5 1483 738 128 0 0 chr4 117764708 117764825 -37865295 + (TC)n Simple_repeat Simple_repeat 1 117 0 5 1483 1089 67 0 0 chr4 117764850 117764985 -37865135 - B1_Mus1 SINE Alu -12 136 2 5 1483 466 214 51 43 chr4 117765033 117765150 -37864970 - ID_B1 SINE B4 -2 222 105 5 1483 229 204 273 0 chr4 117765157 117765245 -37864875 - PB1D7 SINE Alu -8 112 1 5 1483 926 173 0 20 chr4 117765268 117765421 -37864699 - B1_Mur4 SINE Alu 0 150 1 5 1483 446 184 284 0 chr4 117765595 117765704 -37864416 + URR1A DNA MER1_type 81 220 -6 5 1483 338 306 152 69 chr4 117765763 117766017 -37864103 - L1ME1 LINE L1 -1231 4915 4618 5 1483 294 29 0 0 chr4 117766017 117766052 -37864068 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1483 338 306 152 69 chr4 117766052 117766145 -37863975 - L1ME1 LINE L1 -1529 4617 4539 5 1483 1462 39 72 0 chr4 117766506 117766666 -37863454 + B2_Mm1a SINE B2 1 160 -33 5 1483 321 26 0 0 chr4 117766666 117766704 -37863416 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1483 1462 39 72 0 chr4 117766704 117766723 -37863397 + B2_Mm1a SINE B2 161 192 -1 5 1483 342 0 0 0 chr4 117766955 117766993 -37863127 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 1483 879 113 7 15 chr4 117766993 117767128 -37862992 - B1_Mus2 SINE Alu -8 139 6 5 1483 681 226 68 81 chr4 117767128 117767215 -37862905 - B4A SINE B4 -73 219 1 5 1483 189 0 0 0 chr4 117767267 117767288 -37862832 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1483 461 273 61 0 chr4 117767296 117767428 -37862692 - B1F1 SINE Alu -5 144 5 5 1483 266 304 30 20 chr4 117767431 117767578 -37862542 - L1M5 LINE L1 -453 5789 5638 5 1483 1502 68 16 0 chr4 117767814 117768005 -37862115 - B2_Mm2 SINE B2 0 195 2 5 1483 310 239 112 11 chr4 117768063 117768152 -37861968 - BC1_Mm scRNA scRNA -50 102 5 5 1483 678 58 0 0 chr4 117768183 117768270 -37861850 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 5 1483 536 42 14 0 chr4 117768271 117768342 -37861778 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 5 1483 597 129 0 129 chr4 117768358 117768474 -37861646 - B1_Mur4 SINE Alu -21 129 29 5 1483 449 248 75 3 chr4 117768533 117768640 -37861480 - B1F SINE Alu -3 124 4 5 1483 376 301 104 0 chr4 117768964 117769137 -37860983 - L1M5 LINE L1 -582 5612 5422 5 1483 226 281 73 81 chr4 117769255 117769379 -37860741 - B1_Mm SINE Alu -20 127 5 5 1483 473 262 158 28 chr4 117769273 117769450 -37860670 - ID_B1 SINE B4 -15 209 10 5 1483 418 244 176 0 chr4 117769674 117769793 -37860327 - ID_B1 SINE B4 0 224 85 5 1483 234 292 104 78 chr4 117770317 117770432 -37859688 - B3A SINE B2 -79 119 2 5 1483 746 212 173 5 chr4 117770937 117771122 -37858998 + ID_B1 SINE B4 3 218 -6 5 1483 262 352 155 39 chr4 117771144 117771351 -37858769 + Charlie20a DNA Charlie 25 255 -552 5 1483 353 318 110 41 chr4 117771438 117771730 -37858390 + Charlie20a DNA Charlie 375 686 -121 5 1483 760 189 14 7 chr4 117771977 117772116 -37858004 + B1_Mur1 SINE Alu 5 144 -5 5 1483 186 265 41 68 chr4 117772126 117772199 -37857921 + MIRm SINE MIR 125 195 -81 5 1483 374 284 11 0 chr4 117772298 117772393 -37857727 + ID_B1 SINE B4 89 184 -40 5 1483 718 192 49 29 chr4 117772325 117772557 -37857563 - ORR1B1 LTR MaLR -135 211 1 5 1483 752 182 61 0 chr4 117773135 117773267 -37856853 + B3 SINE B2 2 141 -75 5 1483 656 129 0 5 chr4 117773258 117773378 -37856742 - B1_Mur4 SINE Alu 0 120 3 5 1483 189 159 0 0 chr4 117773642 117773686 -37856434 + T-rich Low_complexity Low_complexity 1 44 0 5 1483 858 207 81 0 chr4 117773690 117773888 -37856232 + B3 SINE B2 1 214 -2 5 1483 895 239 0 0 chr4 117773932 117774095 -37856025 - RSINE1 SINE B4 0 165 3 5 1483 520 310 71 22 chr4 117774160 117774487 -37855633 - L1ME2 LINE L1 -27 6137 5797 5 1483 282 309 0 0 chr4 117775518 117775612 -37854508 - L1ME2 LINE L1 -440 5739 5646 5 1483 941 179 152 5 chr4 117776235 117776432 -37853688 + URR1A DNA MER1_type 1 226 0 5 1483 979 190 35 126 chr4 117776468 117776667 -37853453 - B3A SINE B2 -14 181 1 5 1483 26 30 0 0 chr4 117777250 117777283 -37852837 + AT_rich Low_complexity Low_complexity 1 33 0 5 1483 395 297 9 0 chr4 117777293 117777404 -37852716 + (TG)n Simple_repeat Simple_repeat 1 112 0 5 1483 463 243 0 11 chr4 117777420 117777595 -37852525 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 1483 275 231 7 44 chr4 117777620 117777756 -37852364 + (TATG)n Simple_repeat Simple_repeat 4 134 0 5 1483 245 236 73 0 chr4 117777757 117777812 -37852308 - ID SINE ID -144 80 22 5 1483 389 20 20 0 chr4 117777824 117777874 -37852246 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1483 376 319 22 7 chr4 117777883 117778022 -37852098 - B1F SINE Alu -8 141 1 5 1483 645 188 25 1 chr4 117778159 117778291 -37851829 - B1_Mur1 SINE Alu 0 149 13 5 1483 215 295 0 16 chr4 117778305 117778367 -37851753 + CT-rich Low_complexity Low_complexity 2 62 0 5 1483 1121 211 67 0 chr4 117778894 117779103 -37851017 - ID_B1 SINE B4 0 224 2 5 1483 1158 189 0 23 chr4 117780506 117780723 -37849397 - B3 SINE B2 -2 214 3 5 1483 710 272 28 38 chr4 117780747 117780967 -37849153 - B3 SINE B2 -20 196 2 5 1483 317 276 32 65 chr4 117780975 117781068 -37849052 - B3 SINE B2 -27 189 100 5 1483 446 237 48 75 chr4 117781239 117781385 -37848735 - B1F SINE Alu -7 142 1 5 1483 717 335 103 28 chr4 117781439 117781966 -37848154 - MLT1E2 LTR MaLR 0 680 25 5 1483 466 252 23 81 chr4 117782295 117782468 -37847652 + RSINE1 SINE B4 3 165 0 5 1483 527 133 0 0 chr4 117782724 117782799 -37847321 + B3 SINE B2 5 79 -137 5 1483 345 140 0 0 chr4 117782799 117782856 -37847264 + (CACG)n Simple_repeat Simple_repeat 1 57 0 5 1483 329 200 0 0 chr4 117782858 117782918 -37847202 + B3 SINE B2 71 130 -86 5 1483 21 0 0 0 chr4 117782933 117782954 -37847166 + AT_rich Low_complexity Low_complexity 1 21 0 5 1483 1220 48 0 7 chr4 117782979 117783127 -37846993 - B1_Mus1 SINE Alu 0 148 2 5 1483 985 299 113 39 chr4 117783329 117783814 -37846306 - MER21B LTR ERV1 -128 735 160 5 1483 1837 179 57 14 chr4 117783814 117784166 -37845954 + ORR1D1 LTR MaLR 5 371 -3 5 1483 985 307 150 33 chr4 117784166 117784318 -37845802 - MER21B LTR ERV1 -704 159 2 5 1483 688 252 43 0 chr4 117784718 117784857 -37845263 + RSINE1 SINE B4 16 160 -5 5 1483 1995 137 18 27 chr4 117784947 117785277 -37844843 + ORR1A2 LTR MaLR 1 327 0 5 1483 316 351 75 0 chr4 117785581 117785715 -37844405 - LTR33 LTR ERVL -322 193 50 5 1483 843 228 20 20 chr4 117785951 117786152 -37843968 + B3 SINE B2 1 201 -15 5 1483 468 77 0 0 chr4 117786153 117786218 -37843902 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 5 1483 603 235 216 48 chr4 117786358 117786608 -37843512 - B4A SINE B4 0 292 1 6 1483 325 205 0 0 chr4 117786894 117786958 -37843162 + ID4_ SINE ID 28 91 -61 6 1483 361 308 165 38 chr4 117786983 117787219 -37842901 - L1MC4a LINE L1 -1164 6718 6453 6 1483 707 272 70 18 chr4 117787745 117787973 -37842147 + RMER15 LTR ERVL 336 575 0 6 1483 225 155 0 3 chr4 117788413 117788457 -37841663 - B1F SINE Alu -5 144 73 6 1483 385 353 16 16 chr4 117788479 117788600 -37841520 - B3A SINE B2 -14 184 64 6 1483 398 345 128 5 chr4 117789382 117789586 -37840534 - MIR SINE MIR 0 262 34 6 1483 235 280 115 33 chr4 117789686 117789729 -37840391 + MT2B LTR ERVL 125 256 -345 6 1483 269 190 279 0 chr4 117789729 117789808 -37840312 + B1_Mur2 SINE Alu 3 103 -46 6 1483 227 282 14 14 chr4 117789990 117790062 -37840058 + ID SINE ID 2 73 -151 6 1483 286 281 68 42 chr4 117790163 117790318 -37839802 - ORR1E LTR MaLR -6 368 215 6 1483 422 278 9 36 chr4 117790484 117790596 -37839524 - MLT2B2 LTR ERVL -406 109 1 6 1483 1008 235 5 0 chr4 117790974 117791174 -37838946 - B3 SINE B2 -14 202 2 6 1483 258 32 0 0 chr4 117791346 117791377 -37838743 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1483 525 277 20 26 chr4 117791378 117791530 -37838590 - RSINE1 SINE B4 -13 152 2 6 1483 296 308 25 25 chr4 117791589 117791709 -37838411 + B3A SINE B2 2 121 -77 6 1483 713 226 7 21 chr4 117791709 117791849 -37838271 + B1_Mur2 SINE Alu 5 142 -7 6 1483 264 338 12 152 chr4 117791849 117791892 -37838228 + B3 SINE B2 100 142 -74 6 1483 420 20 0 0 chr4 117791892 117791941 -37838179 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1483 814 264 25 30 chr4 117791946 117792145 -37837975 + B3A SINE B2 1 198 0 6 1483 754 183 28 14 chr4 117792205 117792349 -37837771 + B1_Mur3 SINE Alu 2 147 -2 6 1483 889 298 35 18 chr4 117792469 117792807 -37837313 - L1MB8 LINE L1 -200 5978 5635 6 1483 1189 156 75 0 chr4 117793119 117793318 -37836802 + B3 SINE B2 3 216 0 6 1483 198 0 0 0 chr4 117793441 117793463 -37836657 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1483 225 246 188 0 chr4 117793480 117793549 -37836571 + RSINE1 SINE B4 16 97 -68 6 1483 431 303 45 8 chr4 117793685 117793818 -37836302 - RMER30 DNA MER1_type -58 144 7 6 1483 919 198 36 76 chr4 117793818 117794042 -37836078 + B3 SINE B2 2 216 0 6 1483 447 256 28 143 chr4 117794069 117794251 -37835869 + RSINE1 SINE B4 4 164 -1 6 1483 274 192 40 10 chr4 117794476 117794485 -37835635 + (TA)n Simple_repeat Simple_repeat 2 10 0 6 1483 294 73 0 0 chr4 117794485 117794526 -37835594 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1483 274 192 40 10 chr4 117794526 117794616 -37835504 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1483 576 185 104 110 chr4 117795184 117795366 -37834754 - B3A SINE B2 0 198 18 6 1483 218 81 27 0 chr4 117795463 117795500 -37834620 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1483 493 152 14 188 chr4 117795506 117795644 -37834476 + B1_Mur4 SINE Alu 32 145 -5 6 1483 497 167 28 28 chr4 117796660 117796782 -37833338 + (CA)n Simple_repeat Simple_repeat 1 123 0 6 1483 401 0 20 0 chr4 117796782 117796831 -37833289 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1483 497 167 28 28 chr4 117796831 117796887 -37833233 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1483 199 140 40 0 chr4 117796901 117796951 -37833169 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1483 575 250 154 28 chr4 117797013 117797227 -37832893 + Charlie1 DNA MER1_type 2 242 -2539 6 1483 1244 41 0 0 chr4 117797257 117797403 -37832717 + B1_Mm SINE Alu 2 147 0 6 1483 279 0 0 0 chr4 117797429 117797460 -37832660 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1483 234 128 0 0 chr4 117797461 117797500 -37832620 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1483 413 280 91 102 chr4 117797763 117797876 -37832244 + B4 SINE B4 98 214 -78 6 1483 207 0 0 0 chr4 117797876 117797899 -37832221 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1483 387 0 0 0 chr4 117797899 117797941 -37832179 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1483 413 280 91 102 chr4 117797941 117798013 -37832107 + B4 SINE B4 215 281 -11 6 1483 395 68 0 17 chr4 117798020 117798080 -37832040 + (CATA)n Simple_repeat Simple_repeat 4 62 0 6 1483 788 280 79 59 chr4 117798094 117798387 -37831733 + B4 SINE B4 6 292 0 6 1483 274 264 7 7 chr4 117798436 117798581 -37831539 + (CATA)n Simple_repeat Simple_repeat 4 148 0 6 1483 295 257 7 7 chr4 117798596 117798741 -37831379 + (CATA)n Simple_repeat Simple_repeat 4 148 0 6 1483 792 205 0 20 chr4 117798775 117798924 -37831196 + B1_Mur3 SINE Alu 2 147 -2 6 1483 222 62 0 0 chr4 117799446 117799478 -37830642 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 6 1483 1230 34 7 0 chr4 117799614 117799760 -37830360 - B1_Mm SINE Alu 0 147 1 6 1483 989 238 24 61 chr4 117799794 117800089 -37830031 + B4 SINE B4 1 284 -8 6 1483 210 143 0 0 chr4 117800111 117800146 -37829974 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 1483 305 319 68 27 chr4 117800165 117800371 -37829749 - MIR SINE MIR -40 222 12 6 1483 270 385 73 47 chr4 117800587 117800873 -37829247 + L2c LINE L2 2919 3204 -171 6 1483 25 0 0 0 chr4 117800950 117800975 -37829145 + AT_rich Low_complexity Low_complexity 1 25 0 6 1483 533 323 6 69 chr4 117800980 117801153 -37828967 + RSINE1 SINE B4 2 163 -2 6 1483 23 0 0 0 chr4 117801156 117801179 -37828941 + AT_rich Low_complexity Low_complexity 1 23 0 6 1483 413 290 104 10 chr4 117801181 117801310 -37828810 + B3A SINE B2 28 168 -30 6 1483 309 26 0 0 chr4 117801312 117801350 -37828770 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1483 374 242 120 10 chr4 117801387 117801487 -37828633 + ID_B1 SINE B4 113 223 -1 6 1483 1448 72 5 5 chr4 117801520 117801715 -37828405 + B2_Mm2 SINE B2 1 195 0 6 1483 282 241 37 0 chr4 117801725 117801779 -37828341 + B4A SINE B4 86 141 -151 6 1483 298 299 86 0 chr4 117801778 117801895 -37828225 + MER2 DNA MER2_type 145 271 -74 6 1483 623 205 9 0 chr4 117802053 117802165 -37827955 + PB1D9 SINE Alu 1 113 -7 6 1483 242 286 14 14 chr4 117802187 117802258 -37827862 + ID4_ SINE ID 3 73 -10 6 1483 278 310 9 65 chr4 117802260 117802367 -37827753 - MIRc SINE MIR -143 125 25 6 1483 305 197 27 40 chr4 117802475 117802549 -37827571 - PB1D10 SINE Alu -5 112 40 6 1483 716 276 55 10 chr4 117802619 117802820 -37827300 - ID_B1 SINE B4 -5 219 10 6 1483 406 269 0 44 chr4 117802932 117803045 -37827075 + ID_B1 SINE B4 114 221 -3 6 1483 264 149 0 0 chr4 117803144 117803191 -37826929 + (TTCTCC)n Simple_repeat Simple_repeat 4 50 0 6 1483 1029 67 0 15 chr4 117803233 117803370 -37826750 - B1_Mus2 SINE Alu -1 146 12 6 1483 422 214 0 112 chr4 117803269 117803385 -37826735 - MT2B LTR ERVL -337 264 162 6 1483 247 390 107 28 chr4 117803459 117803636 -37826484 + MLT1I LTR MaLR 3 193 -218 6 1483 353 298 0 63 chr4 117803919 117804030 -37826090 - ID_B1 SINE B4 0 224 121 6 1483 424 241 24 24 chr4 117804075 117804160 -37825960 - RSINE1 SINE B4 -60 105 21 6 1483 510 322 13 7 chr4 117804170 117804323 -37825797 - ID_B1 SINE B4 -64 160 7 6 1483 269 247 146 12 chr4 117804593 117804675 -37825445 + ID_B1 SINE B4 123 215 -9 6 1483 247 158 86 17 chr4 117804688 117804703 -37825417 + PB1D10 SINE Alu 50 111 -6 6 1483 251 209 0 0 chr4 117804703 117804746 -37825374 + ID_B1 SINE B4 176 218 -6 6 1483 309 291 93 0 chr4 117805492 117805578 -37824542 - ID_B1 SINE B4 -4 220 127 6 1483 531 204 20 0 chr4 117805704 117805802 -37824318 - ID_B1 SINE B4 -124 100 1 6 1483 536 171 88 52 chr4 117806398 117806534 -37823586 - B1F1 SINE Alu -6 143 3 6 1483 574 247 181 0 chr4 117808467 117808649 -37821471 - B3 SINE B2 0 216 2 6 1483 233 296 27 40 chr4 117808684 117808758 -37821362 + ID2 SINE ID 2 74 -9 6 1483 240 260 0 0 chr4 117810316 117810444 -37819676 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1483 443 92 0 38 chr4 117811945 117812024 -37818096 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1483 351 0 0 0 chr4 117812254 117812293 -37817827 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1483 1178 76 0 0 chr4 117812293 117812437 -37817683 - B1_Mus2 SINE Alu -3 144 1 6 1483 369 330 74 43 chr4 117812439 117812670 -37817450 + Charlie1a DNA MER1_type 736 973 -482 6 1483 225 289 0 0 chr4 117812709 117812761 -37817359 + ID_B1 SINE B4 173 224 0 6 1483 338 286 81 10 chr4 117812778 117812877 -37817243 + PB1D10 SINE Alu 1 106 -11 6 1483 342 195 23 58 chr4 117812999 117813086 -37817034 + PB1D9 SINE Alu 37 120 0 6 1483 570 15 0 0 chr4 117813144 117813211 -37816909 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 6 1483 227 376 36 18 chr4 117813211 117813314 -37816806 - PB1D10 SINE Alu -7 110 5 6 1483 249 57 0 0 chr4 117813402 117813437 -37816683 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1483 233 281 0 0 chr4 117813465 117813529 -37816591 + Charlie1a DNA MER1_type 1327 1390 -65 6 1483 944 214 152 138 chr4 117813722 117813862 -37816258 + ORR1D1 LTR MaLR 1 146 -228 6 1483 297 0 0 0 chr4 117813862 117813895 -37816225 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1483 216 0 0 0 chr4 117813895 117813918 -37816202 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1483 944 214 152 138 chr4 117813918 117814145 -37815975 + ORR1D1 LTR MaLR 147 373 -1 6 1483 1179 48 0 45 chr4 117814488 117814642 -37815478 + B1_Mus1 SINE Alu 2 148 0 6 1483 337 188 94 3 chr4 117815594 117815685 -37814435 + B1_Mur2 SINE Alu 52 149 0 6 1483 232 349 23 0 chr4 117815821 117815907 -37814213 + RSINE1 SINE B4 74 161 -4 6 1483 212 271 109 27 chr4 117817403 117817513 -37812607 + L3 LINE CR1 4134 4252 -237 6 1483 221 238 62 31 chr4 117818031 117818096 -37812024 + B4A SINE B4 80 146 -146 7 1483 384 206 30 89 chr4 117818055 117818156 -37811964 + PB1D7 SINE Alu 21 115 -5 7 1483 986 234 15 5 chr4 117818163 117818369 -37811751 + B3 SINE B2 2 209 -7 7 1483 227 164 35 52 chr4 117822104 117822162 -37807958 - L4 LINE RTE -278 1751 1695 7 1483 341 109 16 0 chr4 117823398 117823462 -37806658 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1483 296 194 82 14 chr4 117823462 117823535 -37806585 + 4.5SRNA scRNA scRNA 14 91 -3 7 1483 713 67 76 0 chr4 117823476 117823581 -37806539 + B1_Mus1 SINE Alu 35 147 -1 7 1483 270 290 36 45 chr4 117823663 117823775 -37806345 + B1F SINE Alu 32 142 -7 7 1483 296 190 0 65 chr4 117824076 117824138 -37805982 - B1_Mur3 SINE Alu 0 149 92 7 1483 526 93 116 0 chr4 117824132 117824218 -37805902 + B2_Mm1t SINE B2 84 179 -14 7 1483 497 63 300 75 chr4 117824265 117824385 -37805735 + B2_Mm2 SINE B2 47 193 -2 7 1483 743 81 0 0 chr4 117824386 117824485 -37805635 - B1_Mus1 SINE Alu -49 99 1 7 1483 214 296 14 0 chr4 117825515 117825586 -37804534 + L2c LINE L2 3276 3347 -40 7 1483 617 214 192 22 chr4 117826137 117826319 -37803801 + B3 SINE B2 1 213 -3 7 1483 189 268 82 35 chr4 117827177 117827262 -37802858 - MIRm SINE MIR -1 275 187 7 1483 243 289 97 24 chr4 117827831 117827955 -37802165 + MLT1E2 LTR MaLR 25 157 -470 7 1483 293 261 0 115 chr4 117828561 117828665 -37801455 + B1F1 SINE Alu 40 131 -18 7 1483 389 250 0 52 chr4 117830178 117830275 -37799845 + RSINE1 SINE B4 14 105 -60 7 1483 369 229 160 10 chr4 117830290 117830395 -37799725 + B1F1 SINE Alu 23 132 -17 7 1483 228 152 0 115 chr4 117830461 117830500 -37799620 + B1F1 SINE Alu 68 100 -49 7 1483 387 276 43 86 chr4 117830500 117830812 -37799308 + RSINE1 SINE B4 1 292 0 7 1483 408 130 0 0 chr4 117830866 117830935 -37799185 + (A)n Simple_repeat Simple_repeat 1 69 0 7 1483 392 222 0 0 chr4 117831268 117831340 -37798780 + PB1D9 SINE Alu 47 118 -2 7 1483 530 266 20 54 chr4 117831395 117831542 -37798578 - RSINE1 SINE B4 -22 143 2 7 1483 517 241 56 100 chr4 117831542 117831722 -37798398 - ID_B1 SINE B4 0 224 53 7 1483 1420 166 104 127 chr4 117831985 117832371 -37797749 + ORR1C2 LTR MaLR 7 383 -1 7 185 376 224 93 9 chr4 117833696 117833804 -37796316 + PB1D9 SINE Alu 3 119 -1 7 1484 279 0 0 0 chr4 117835281 117835312 -37794808 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1484 504 255 13 88 chr4 117835438 117835457 -37794663 + ID_B1 SINE B4 78 219 0 7 1484 878 128 15 15 chr4 117835457 117835592 -37794528 + B1_Mur1 SINE Alu 15 149 0 7 1484 860 174 11 0 chr4 117835605 117835783 -37794337 + GA-rich Low_complexity Low_complexity 1 180 0 7 1484 1243 41 7 0 chr4 117835855 117836002 -37794118 + B1_Mus1 SINE Alu 1 148 0 7 1484 315 0 0 0 chr4 117836002 117836037 -37794083 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1484 247 282 0 12 chr4 117836337 117836423 -37793697 + PB1D10 SINE Alu 28 112 -5 7 1484 317 236 33 98 chr4 117836445 117836567 -37793553 + PB1D9 SINE Alu 3 116 -4 7 1484 865 247 0 62 chr4 117837684 117837895 -37792225 + B3A SINE B2 1 198 0 7 1484 26 0 0 0 chr4 117837895 117837921 -37792199 + AT_rich Low_complexity Low_complexity 1 26 0 7 1484 1366 72 33 0 chr4 117837985 117838166 -37791954 + B2_Mm2 SINE B2 3 189 -6 7 1484 680 185 0 30 chr4 117838169 117838303 -37791817 + B1_Mus1 SINE Alu 2 131 -17 7 1484 202 264 36 36 chr4 117838392 117838447 -37791673 + L2 LINE L2 246 300 -3119 7 1484 348 24 0 0 chr4 117838630 117838671 -37791449 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1484 402 335 0 13 chr4 117839109 117839260 -37790860 + L1MA5 LINE L1 6125 6273 -27 7 1484 698 195 16 0 chr4 117839297 117839425 -37790695 - B1_Mur1 SINE Alu -19 130 1 7 1484 277 200 0 0 chr4 117839465 117839520 -37790600 + PB1D10 SINE Alu 37 91 -26 7 1484 274 117 127 48 chr4 117840269 117840332 -37789788 + B1_Mus2 SINE Alu 80 147 0 7 1484 313 267 88 71 chr4 117840501 117840614 -37789506 + PB1D10 SINE Alu 1 115 -2 7 1484 1413 64 26 11 chr4 117840727 117840885 -37789235 + B2_Mm1a SINE B2 2 159 -34 7 1484 180 0 0 0 chr4 117840885 117840905 -37789215 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1484 1413 64 26 11 chr4 117840905 117840935 -37789185 + B2_Mm1a SINE B2 160 193 0 7 1484 714 247 7 0 chr4 117841301 117841447 -37788673 + B1_Mur2 SINE Alu 2 148 -1 7 1484 433 274 66 41 chr4 117841556 117841678 -37788442 + RSINE1 SINE B4 3 127 -38 7 1484 182 233 0 23 chr4 117842455 117842499 -37787621 - L2a LINE L2 -7 3419 3377 7 1484 702 164 492 0 chr4 117842677 117842912 -37787208 + ORR1D2 LTR MaLR 4 356 -14 7 1484 398 244 234 15 chr4 117842996 117843059 -37787061 + ID_B1 SINE B4 3 95 -129 7 1484 261 235 214 0 chr4 117843059 117843157 -37786963 + PB1D9 SINE Alu 1 119 -1 7 1484 637 229 96 43 chr4 117843161 117843348 -37786772 + B3A SINE B2 2 198 0 7 1484 1188 82 0 0 chr4 117843373 117843520 -37786600 + B1_Mus2 SINE Alu 1 147 0 7 1484 251 304 88 15 chr4 117843555 117843692 -37786428 + RSINE1 SINE B4 2 148 -17 7 1484 408 217 136 192 chr4 117843756 117843933 -37786187 + B3 SINE B2 26 212 -4 7 1484 235 221 39 117 chr4 117844079 117844156 -37785964 + B1F1 SINE Alu 36 106 -43 7 1484 583 118 231 16 chr4 117844752 117844873 -37785247 + B1_Mus1 SINE Alu 1 147 -1 7 1484 206 121 0 0 chr4 117844874 117844907 -37785213 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 7 1484 814 216 82 97 chr4 117844929 117845124 -37784996 + B3 SINE B2 1 192 -3 7 1484 201 153 14 27 chr4 117846018 117846092 -37784028 + A-rich Low_complexity Low_complexity 2 74 0 7 1484 445 249 61 81 chr4 117846102 117846299 -37783821 + B3A SINE B2 1 193 -5 7 1484 417 214 108 0 chr4 117846304 117846425 -37783695 - B1_Mur3 SINE Alu -8 141 7 7 1484 911 216 25 25 chr4 117846472 117846676 -37783444 + B3 SINE B2 13 216 0 7 1484 623 231 67 57 chr4 117846738 117846931 -37783189 + B2_Mm2 SINE B2 1 195 0 7 1484 450 316 25 19 chr4 117846938 117847099 -37783021 + RSINE1 SINE B4 4 165 0 7 1484 340 264 76 11 chr4 117847141 117847233 -37782887 + ID_B1 SINE B4 106 203 -21 7 1484 913 80 8 0 chr4 117847241 117847366 -37782754 + B1_Mus1 SINE Alu 22 147 -1 7 1484 401 162 276 0 chr4 117847371 117847476 -37782644 + B1_Mm SINE Alu 14 147 0 7 1484 33 25 0 0 chr4 117847476 117847516 -37782604 + AT_rich Low_complexity Low_complexity 1 40 0 7 1484 492 263 50 50 chr4 117847654 117847814 -37782306 + RSINE1 SINE B4 3 162 -3 7 1484 614 192 104 0 chr4 117847834 117847959 -37782161 + B1_Mur1 SINE Alu 3 140 -9 7 1484 180 111 0 0 chr4 117848994 117849021 -37781099 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1484 543 114 286 0 chr4 117849061 117849166 -37780954 + B1_Mus2 SINE Alu 1 135 -12 7 1484 231 0 0 71 chr4 117849167 117849209 -37780911 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1484 1701 31 0 0 chr4 117850294 117850487 -37779633 + B2_Mm1a SINE B2 1 193 0 7 1484 514 138 206 22 chr4 117850609 117850711 -37779409 + B1_Mur4 SINE Alu 7 118 -32 7 1484 255 275 62 0 chr4 117851559 117851639 -37778481 - Arthur1B DNA Tip100 -1076 149 65 7 1484 289 303 53 0 chr4 117851668 117851744 -37778376 + L2a LINE L2 3341 3420 -6 7 1484 416 315 112 10 chr4 117851895 117852100 -37778020 + MIRb SINE MIR 35 260 -8 7 1484 213 88 0 0 chr4 117853672 117853688 -37776432 + (A)n Simple_repeat Simple_repeat 1 16 0 7 1484 1158 88 0 7 chr4 117853688 117853837 -37776283 + B1_Mus1 SINE Alu 1 148 0 7 1484 213 88 0 0 chr4 117853837 117853854 -37776266 + (A)n Simple_repeat Simple_repeat 1 17 0 7 1484 357 185 62 0 chr4 117854028 117854093 -37776027 + B1_Mur2 SINE Alu 73 141 -8 7 1484 1202 37 0 0 chr4 117854104 117854239 -37775881 + B1_Mm SINE Alu 1 135 -12 7 1484 557 252 0 92 chr4 117854275 117854343 -37775777 + ID_B1 SINE B4 86 151 -73 7 1484 867 151 20 14 chr4 117854343 117854491 -37775629 + B1_Mur2 SINE Alu 1 149 0 7 1484 557 252 0 92 chr4 117854491 117854575 -37775545 + ID_B1 SINE B4 152 224 0 7 1484 583 195 0 89 chr4 117854669 117854793 -37775327 - B1_Mur4 SINE Alu -6 144 32 7 1484 660 201 27 48 chr4 117854859 117855005 -37775115 + B1_Mur1 SINE Alu 5 147 -2 7 1484 500 314 40 8 chr4 117855040 117855165 -37774955 - RSINE1 SINE B4 -34 131 3 7 1484 215 138 0 58 chr4 117855165 117855234 -37774886 + T-rich Low_complexity Low_complexity 1 65 0 7 1484 1224 68 0 0 chr4 117855235 117855382 -37774738 - B1_Mus2 SINE Alu 0 147 1 7 1484 618 88 398 23 chr4 117855433 117855561 -37774559 + B2_Mm1t SINE B2 1 176 -17 7 1484 347 107 0 30 chr4 117855590 117855698 -37774422 + B2_Mm2 SINE B2 47 187 -8 7 1484 1236 48 0 20 chr4 117855707 117855857 -37774263 + B1_Mus1 SINE Alu 2 148 0 7 1484 242 59 0 0 chr4 117855930 117855964 -37774156 + B3 SINE B2 1 34 -182 7 1484 2201 106 46 44 chr4 117855964 117856330 -37773790 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1484 55182 16 7 10 chr4 117856330 117862823 -37767297 - IAPEz-int LTR ERVK 0 6481 8 7 1484 2201 106 46 44 chr4 117862823 117863189 -37766931 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1484 1183 70 0 0 chr4 117863194 117863352 -37766768 + B2_Mm1t SINE B2 35 192 -1 7 1484 460 232 75 88 chr4 117863348 117863526 -37766594 + B3A SINE B2 27 202 -14 8 1484 2264 232 80 18 chr4 117863690 117864471 -37765649 - L1MB8 LINE L1 -225 5953 5128 8 1484 487 304 83 45 chr4 117864506 117864771 -37765349 + L2 LINE L2 2621 2895 -524 8 1484 275 219 78 0 chr4 117864911 117864975 -37765145 + ID_B1 SINE B4 129 197 -27 8 1484 479 301 98 0 chr4 117865093 117865236 -37764884 + RSINE1 SINE B4 8 164 -1 8 1484 351 248 59 81 chr4 117865225 117865256 -37764864 - RLTR25B LTR ERVK -455 573 532 8 1484 510 61 0 0 chr4 117865264 117865330 -37764790 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 1484 351 248 59 81 chr4 117865330 117865426 -37764694 - RLTR25B LTR ERVK -497 531 441 8 1484 1008 33 0 16 chr4 117865426 117865445 -37764675 - B1_Mus1 SINE Alu -12 136 22 8 1484 499 213 0 87 chr4 117865463 117865566 -37764554 + PB1D9 SINE Alu 19 112 -8 8 1484 234 267 9 189 chr4 117865493 117865604 -37764516 + MT2B2 LTR ERVL 197 287 -297 8 1484 571 233 129 0 chr4 117865580 117865696 -37764424 + B1_Mur1 SINE Alu 7 137 -12 8 1484 813 193 28 14 chr4 117865792 117865934 -37764186 + B1_Mus2 SINE Alu 3 146 -1 8 1484 602 269 0 76 chr4 117866454 117866611 -37763509 + RSINE1 SINE B4 6 150 -15 8 1484 268 267 132 11 chr4 117866696 117866787 -37763333 + ID_B1 SINE B4 90 191 -33 8 1484 526 268 42 7 chr4 117866807 117866950 -37763170 + B1F2 SINE Alu 1 148 -1 8 1484 264 213 0 0 chr4 117866952 117867013 -37763107 + GA-rich Low_complexity Low_complexity 3 63 0 8 1484 1184 51 11 33 chr4 117867038 117867221 -37762899 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1484 608 229 53 73 chr4 117867225 117867376 -37762744 + B1_Mur2 SINE Alu 1 148 -1 8 1484 21 0 0 0 chr4 117867389 117867410 -37762710 + AT_rich Low_complexity Low_complexity 1 21 0 8 1484 802 161 0 0 chr4 117867417 117867541 -37762579 + B1_Mus1 SINE Alu 13 136 -12 8 1484 209 230 185 1 chr4 117868165 117868246 -37761874 - L2b LINE L2 -61 3326 3217 8 1484 1216 71 35 80 chr4 117868334 117868534 -37761586 - B2_Mm2 SINE B2 0 195 5 8 1484 231 36 0 0 chr4 117868547 117868575 -37761545 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 8 1484 983 40 105 0 chr4 117868589 117868713 -37761407 - B1_Mus1 SINE Alu -10 138 2 8 1484 288 229 29 0 chr4 117869067 117869137 -37760983 - MER5A1 DNA MER1_type -61 105 34 8 1484 233 123 16 95 chr4 117869160 117869223 -37760897 - L1M4 LINE L1 -438 5746 5689 8 1484 3555 18 5 0 chr4 117869255 117869649 -37760471 + MTA_Mm LTR MaLR 1 396 0 8 1484 1178 68 7 0 chr4 117869734 117869880 -37760240 - B1_Mus1 SINE Alu 0 148 2 8 1484 876 191 14 0 chr4 117869885 117870032 -37760088 - B1_Mur4 SINE Alu 0 150 2 8 1484 240 62 0 0 chr4 117870035 117870067 -37760053 + PB1D9 SINE Alu 2 33 -87 8 1484 1314 105 5 40 chr4 117870081 117870279 -37759841 - B2_Mm1a SINE B2 -2 191 1 8 1484 222 62 0 0 chr4 117870285 117870317 -37759803 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1484 1174 23 0 0 chr4 117870317 117870447 -37759673 - B1_Mus2 SINE Alu -13 134 5 8 1484 892 252 56 0 chr4 117870457 117870655 -37759465 - B3 SINE B2 -6 210 2 8 1484 609 205 0 25 chr4 117870716 117870836 -37759284 - PB1D9 SINE Alu -2 118 2 8 1484 1266 108 0 0 chr4 117870966 117871262 -37758858 + (CA)n Simple_repeat Simple_repeat 1 296 0 8 1484 730 289 35 5 chr4 117871321 117871519 -37758601 - ID_B1 SINE B4 -17 207 4 8 1484 330 298 87 61 chr4 117871540 117871851 -37758269 - L1M5 LINE L1 -535 5589 5271 8 1484 749 196 15 0 chr4 117871907 117872040 -37758080 - B1_Mur1 SINE Alu -5 144 10 8 1484 625 230 6 63 chr4 117872101 117872259 -37757861 - B1_Mur1 SINE Alu 0 149 1 8 1484 264 261 0 0 chr4 117872297 117872362 -37757758 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1484 434 239 118 65 chr4 117872362 117872532 -37757588 - B3A SINE B2 -15 183 5 8 1484 1413 50 5 22 chr4 117872547 117872731 -37757389 - B2_Mm2 SINE B2 -8 187 7 8 1484 249 108 0 0 chr4 117872753 117872790 -37757330 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 8 1484 1156 95 0 0 chr4 117872792 117872939 -37757181 - B1_Mus2 SINE Alu 0 147 1 8 1484 1734 240 45 10 chr4 117872939 117872975 -37757145 - MTD LTR MaLR -9 410 375 8 1484 1362 97 21 0 chr4 117872975 117873161 -37756959 + B2_Mm2 SINE B2 1 190 -5 8 1484 1734 240 45 10 chr4 117873161 117873520 -37756600 - MTD LTR MaLR -45 374 1 8 1484 1299 27 0 0 chr4 117873566 117873712 -37756408 - B1_Mus2 SINE Alu -1 146 1 8 1484 998 215 17 80 chr4 117873739 117873977 -37756143 + ID_B1 SINE B4 2 224 0 8 1484 1002 236 14 24 chr4 117873992 117874200 -37755920 + B3 SINE B2 3 208 -8 8 1484 1126 77 0 0 chr4 117874212 117874355 -37755765 + B1_Mus2 SINE Alu 5 147 0 8 1484 260 53 26 0 chr4 117874437 117874475 -37755645 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 8 1484 434 283 61 30 chr4 117874690 117874821 -37755299 - ID_B1 SINE B4 -7 217 83 8 1484 1029 212 25 0 chr4 117874919 117875122 -37754998 - B3 SINE B2 -8 208 1 8 1484 648 230 26 50 chr4 117875129 117875318 -37754802 - B3 SINE B2 -6 189 6 8 1484 413 308 107 8 chr4 117875347 117875478 -37754642 + RSINE1 SINE B4 7 150 -15 8 1484 180 97 0 0 chr4 117875485 117875516 -37754604 + (TAA)n Simple_repeat Simple_repeat 3 33 0 8 1484 737 234 14 0 chr4 117875523 117875664 -37754456 + B1_Mur1 SINE Alu 2 144 -5 8 1484 1236 41 0 0 chr4 117875702 117875849 -37754271 + B1_Mus2 SINE Alu 1 147 0 8 1484 292 256 11 32 chr4 117875864 117875880 -37754240 + ID_B1 SINE B4 134 224 0 8 1484 569 52 13 0 chr4 117875880 117875957 -37754163 + B1_Mm SINE Alu 70 147 0 8 1484 261 0 0 0 chr4 117875957 117875986 -37754134 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1484 215 246 88 0 chr4 117876445 117876502 -37753618 + ID2 SINE ID 11 72 -11 8 1484 498 139 15 30 chr4 117876526 117876659 -37753461 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 8 1484 378 263 0 40 chr4 117876716 117876815 -37753305 - PB1D10 SINE Alu -20 97 3 8 1484 227 294 44 66 chr4 117876815 117876847 -37753273 - B4A SINE B4 -206 86 57 8 1484 749 259 72 0 chr4 117876985 117877178 -37752942 - B3 SINE B2 -5 211 5 8 1484 298 255 249 4 chr4 117877245 117877384 -37752736 + MTEa LTR MaLR 3 180 -199 8 1484 1122 118 41 0 chr4 117877522 117877692 -37752428 + B2_Mm2 SINE B2 1 177 -18 8 1484 596 296 116 12 chr4 117877692 117877934 -37752186 - B4A SINE B4 -17 275 7 8 1484 236 194 113 41 chr4 117877895 117877992 -37752128 + MTEa LTR MaLR 274 377 -2 8 1484 237 306 44 95 chr4 117878104 117878241 -37751879 + MLT1H2 LTR MaLR 177 306 -183 8 1484 249 329 12 0 chr4 117878246 117878328 -37751792 + MIRb SINE MIR 143 225 -43 8 1484 278 247 174 51 chr4 117878929 117879027 -37751093 + PB1D7 SINE Alu 2 111 -9 8 1484 473 238 104 30 chr4 117879274 117879408 -37750712 + ID_B1 SINE B4 81 224 0 8 1484 828 121 26 73 chr4 117879417 117879568 -37750552 + B1_Mur1 SINE Alu 5 148 -1 8 1484 208 135 0 0 chr4 117881576 117881613 -37748507 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1484 204 40 0 0 chr4 117886683 117886708 -37743412 + (ATG)n Simple_repeat Simple_repeat 1 25 0 8 1484 566 251 46 113 chr4 117886903 117887141 -37742979 - ID_B1 SINE B4 -1 223 2 8 1484 484 254 48 0 chr4 117887248 117887374 -37742746 - B4 SINE B4 -75 217 86 8 1484 223 281 49 33 chr4 117887915 117888053 -37742067 - MIRb SINE MIR 0 262 124 8 1484 217 302 116 0 chr4 117889257 117889343 -37740777 + MIRm SINE MIR 70 165 -111 8 1484 261 335 22 11 chr4 117890386 117890564 -37739556 + GA-rich Low_complexity Low_complexity 1 180 0 8 1484 366 244 0 151 chr4 117891829 117891915 -37738205 + MLT1F LTR MaLR 178 300 -295 8 1484 513 302 81 34 chr4 117891956 117892165 -37737955 - MER58A DNA MER1_type -3 221 3 8 1484 476 281 37 25 chr4 117892165 117892352 -37737768 + MLT1F LTR MaLR 400 591 0 8 1484 597 14 0 0 chr4 117892723 117892793 -37737327 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1484 975 61 121 0 chr4 117894960 117895092 -37735028 + B1_Mus1 SINE Alu 1 148 0 8 1484 431 247 72 0 chr4 117895171 117895268 -37734852 + B1_Mm SINE Alu 37 140 -7 8 1484 229 268 76 76 chr4 117895174 117895279 -37734841 + B4 SINE B4 125 229 -63 8 1484 590 162 13 19 chr4 117900754 117900911 -37729209 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 8 1484 230 229 34 67 chr4 117901518 117901607 -37728513 + GA-rich Low_complexity Low_complexity 6 91 0 8 1484 405 0 0 0 chr4 117904555 117904600 -37725520 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1484 216 0 0 0 chr4 117904689 117904713 -37725407 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1484 341 337 21 63 chr4 117905229 117905263 -37724857 - B3A SINE B2 -16 182 1 8 1484 562 276 13 26 chr4 117905263 117905419 -37724701 - B4A SINE B4 -138 154 1 8 1484 486 0 0 0 chr4 117909331 117909385 -37720735 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1484 338 268 22 44 chr4 117910126 117910216 -37719904 - ID SINE ID -135 89 2 8 1484 303 237 0 0 chr4 117910216 117910260 -37719860 + B1F2 SINE Alu 38 81 -68 8 1484 4115 59 6 6 chr4 117911880 117912389 -37717731 + L1_Mus1 LINE L1 6059 6567 0 8 1484 197 43 85 0 chr4 117912395 117912442 -37717678 + (CAA)n Simple_repeat Simple_repeat 1 51 0 8 1484 252 132 86 29 chr4 117912444 117912514 -37717606 + L1_Mm LINE L1 5252 5325 -558 8 1484 281 290 15 15 chr4 117912891 117912980 -37717140 - ID4_ SINE ID -60 92 1 9 1484 340 374 54 11 chr4 117913159 117913343 -37716777 + MLT1K LTR MaLR 368 559 -36 9 1484 1103 97 7 0 chr4 117913381 117913526 -37716594 - B1_Mus1 SINE Alu -1 147 2 9 1484 320 303 34 0 chr4 117913594 117913683 -37716437 - B3 SINE B2 -123 93 2 9 1484 657 247 124 16 chr4 117913683 117913876 -37716244 - B3 SINE B2 -2 214 1 9 1484 642 176 113 15 chr4 117913891 117914024 -37716096 - B1_Mus2 SINE Alu 0 147 2 9 1484 185 35 0 65 chr4 117914042 117914073 -37716047 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1484 1157 76 0 0 chr4 117914078 117914223 -37715897 - B1_Mus1 SINE Alu -2 146 2 9 1484 766 204 35 0 chr4 117914609 117914751 -37715369 - B1_Mur2 SINE Alu 0 149 3 9 1484 1278 34 0 0 chr4 117915287 117915434 -37714686 - B1_Mm SINE Alu 0 147 1 9 1484 484 315 55 18 chr4 117919009 117919174 -37710946 + MER20 DNA MER1_type 45 215 -4 9 1484 436 16 33 0 chr4 117921098 117921159 -37708961 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1484 190 213 64 0 chr4 117923083 117923130 -37706990 + L3 LINE CR1 2734 2783 -1706 9 1484 1815 195 72 35 chr4 117923219 117923623 -37706497 + MTD LTR MaLR 1 419 0 9 1484 285 98 0 0 chr4 117924616 117924657 -37705463 + (GCGTG)n Simple_repeat Simple_repeat 3 43 0 9 1484 219 186 0 0 chr4 117926036 117926079 -37704041 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 9 1484 313 335 6 129 chr4 117926091 117926173 -37703947 + Charlie1 DNA MER1_type 34 99 -2682 9 1484 511 233 62 8 chr4 117926173 117926303 -37703817 + B1F SINE Alu 5 141 -8 9 1484 313 335 6 129 chr4 117926303 117926398 -37703722 + Charlie1 DNA MER1_type 100 189 -2592 9 1484 610 268 51 20 chr4 117926424 117926679 -37703441 + Charlie1 DNA MER1_type 2519 2781 0 9 1484 255 250 0 0 chr4 117928846 117928898 -37701222 + L2b LINE L2 3321 3372 -3 9 1484 220 127 0 35 chr4 117930934 117930991 -37699129 + A-rich Low_complexity Low_complexity 3 57 0 9 1484 252 386 92 46 chr4 117931123 117931362 -37698758 + MIR SINE MIR 13 262 0 9 1484 1085 45 53 0 chr4 117931990 117932122 -37697998 - B1_Mus1 SINE Alu -9 139 1 9 1484 208 331 8 56 chr4 117933101 117933218 -37696902 - MIRc SINE MIR -44 164 47 9 1484 246 289 109 31 chr4 117935658 117935851 -37694269 + L2 LINE L2 1924 2131 -1288 9 1484 193 357 99 23 chr4 117935905 117936077 -37694043 + L2 LINE L2 2333 2517 -902 9 1484 991 270 121 40 chr4 117940053 117940524 -37689596 + L1ME4a LINE L1 5362 5870 -254 9 1484 853 258 28 18 chr4 117940542 117940759 -37689361 + B4A SINE B4 1 219 -73 9 1484 214 257 149 0 chr4 117940733 117940807 -37689313 + BC1_Mm scRNA scRNA 16 100 -52 9 1484 432 333 82 17 chr4 117942347 117942579 -37687541 - MIRb SINE MIR 0 268 22 9 1484 229 345 22 33 chr4 117943169 117943259 -37686861 - MIRc SINE MIR -144 124 36 9 1484 904 197 87 39 chr4 117943443 117943649 -37686471 - B3 SINE B2 0 216 1 9 1484 229 143 61 0 chr4 117943651 117943700 -37686420 + T-rich Low_complexity Low_complexity 3 54 0 9 1484 188 250 71 0 chr4 117943756 117943812 -37686308 - MIRc SINE MIR -81 187 128 9 1484 211 292 135 56 chr4 117944435 117944613 -37685507 + L2b LINE L2 2971 3162 -213 9 1484 197 380 28 0 chr4 117944707 117944815 -37685305 + L2b LINE L2 3230 3340 -35 9 1484 180 0 0 0 chr4 117945005 117945025 -37685095 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 9 1484 207 0 0 0 chr4 117945695 117945718 -37684402 + (TGG)n Simple_repeat Simple_repeat 1 23 0 9 1484 216 322 167 0 chr4 117946348 117946438 -37683682 - MIRb SINE MIR -47 221 117 9 1484 213 39 0 0 chr4 117946543 117946569 -37683551 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1484 576 257 37 0 chr4 117947982 117948118 -37682002 - ID_B1 SINE B4 -2 222 82 9 1484 1889 172 101 27 chr4 117951134 117951627 -37678493 - RMER4B LTR ERVK 0 466 1 9 1484 956 194 60 20 chr4 117952887 117953087 -37677033 + B3 SINE B2 1 208 -8 9 1484 555 220 54 170 chr4 117953779 117954020 -37676100 + Charlie18a DNA MER1_type 130 342 0 9 1484 588 299 22 40 chr4 117955135 117955358 -37674762 + MER20 DNA MER1_type 1 219 0 9 1484 429 224 57 57 chr4 117955886 117956009 -37674111 - RSINE1 SINE B4 -40 125 3 9 1484 921 195 101 20 chr4 117956339 117956538 -37673582 + B3 SINE B2 1 215 -1 9 1484 993 106 35 0 chr4 117956570 117956711 -37673409 - B1_Mus1 SINE Alu -2 146 1 9 1484 257 380 95 32 chr4 117957828 117958111 -37672009 + L2b LINE L2 3075 3375 0 9 1484 1057 174 33 43 chr4 117958541 117958751 -37671369 - B3 SINE B2 -6 210 3 9 1484 285 318 104 19 chr4 117960193 117960347 -37669773 - MIRb SINE MIR -9 259 93 9 1484 256 271 29 0 chr4 117961007 117961077 -37669043 - ID4 SINE ID -3 80 9 9 1484 207 351 40 0 chr4 117961099 117961173 -37668947 + L2c LINE L2 3054 3130 -257 9 1484 184 304 0 0 chr4 117961354 117961410 -37668710 + L2c LINE L2 3350 3405 -21 9 1484 186 43 0 0 chr4 117963179 117963202 -37666918 + (CGGGA)n Simple_repeat Simple_repeat 5 27 0 9 1484 23 33 0 0 chr4 117963308 117963338 -37666782 + GC_rich Low_complexity Low_complexity 1 30 0 9 1484 25 90 0 0 chr4 117963444 117963511 -37666609 + GC_rich Low_complexity Low_complexity 1 67 0 9 1484 40 49 0 0 chr4 117963635 117963696 -37666424 + GC_rich Low_complexity Low_complexity 1 61 0 9 1484 262 207 0 32 chr4 117963848 117963973 -37666147 + (CCG)n Simple_repeat Simple_repeat 3 123 0 9 1484 266 209 22 44 chr4 117963974 117964064 -37666056 + C-rich Low_complexity Low_complexity 1 88 0 9 1484 301 289 110 7 chr4 117964627 117964763 -37665357 - B3A SINE B2 -3 195 46 9 1485 211 344 79 16 chr4 117966539 117966666 -37663454 + L2a LINE L2 3291 3425 -1 9 1485 1389 77 28 0 chr4 117966666 117966848 -37663272 + B2_Mm2 SINE B2 2 188 -7 9 1485 477 0 0 0 chr4 117968763 117968816 -37661304 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1485 318 87 87 0 chr4 117969176 117969245 -37660875 + CT-rich Low_complexity Low_complexity 5 79 0 9 1485 468 310 102 15 chr4 117969268 117969474 -37660646 - ID_B1 SINE B4 0 224 1 9 1485 318 106 0 0 chr4 117969567 117969614 -37660506 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 9 1485 222 287 137 10 chr4 117970236 117970338 -37659782 + MIRb SINE MIR 103 217 -51 9 1485 386 121 15 0 chr4 117970831 117970897 -37659223 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1485 333 237 40 0 chr4 117970940 117971016 -37659104 + PB1D10 SINE Alu 37 115 -2 9 1485 243 222 0 0 chr4 117971295 117971340 -37658780 + RSINE1 SINE B4 91 135 -30 9 1485 231 88 0 0 chr4 117971346 117971380 -37658740 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1485 917 126 229 0 chr4 117971728 117971903 -37658217 + B3 SINE B2 2 216 0 9 1485 320 117 52 0 chr4 117971906 117971983 -37658137 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 1485 242 293 60 12 chr4 117972208 117972291 -37657829 - PB1D10 SINE Alu -8 109 23 9 1485 344 274 250 7 chr4 117972224 117972360 -37657760 - ID_B1 SINE B4 -54 170 2 9 1485 364 339 35 0 chr4 117972468 117972583 -37657537 + PB1D7 SINE Alu 2 120 0 9 1485 241 308 104 142 chr4 117972633 117972845 -37657275 - B3 SINE B2 -3 213 10 9 1485 418 240 0 96 chr4 117972941 117973017 -37657103 + PB1D7 SINE Alu 11 86 -34 9 1485 999 139 0 0 chr4 117973017 117973183 -37656937 + (TA)n Simple_repeat Simple_repeat 2 167 0 9 1485 418 240 0 96 chr4 117973183 117973221 -37656899 + PB1D7 SINE Alu 87 114 -6 9 1485 1537 37 32 0 chr4 117973350 117973537 -37656583 - B2_Mm1a SINE B2 0 193 1 9 1485 983 269 110 8 chr4 117974067 117974423 -37655697 + L1MB7 LINE L1 4744 5135 -1011 9 1485 717 182 43 7 chr4 117974462 117974600 -37655520 + B1_Mus2 SINE Alu 5 147 0 9 1485 1054 325 36 19 chr4 117974731 117975245 -37654875 + L1MB7 LINE L1 5418 5947 -237 9 1485 576 233 26 0 chr4 117975321 117975437 -37654683 + RSINE1 SINE B4 6 124 -41 9 1485 306 0 0 0 chr4 117975460 117975494 -37654626 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1485 741 154 8 0 chr4 117975526 117975643 -37654477 - PB1D9 SINE Alu -2 118 1 9 1485 362 281 118 14 chr4 117975662 117975882 -37654238 + L1MB7 LINE L1 5892 6134 -50 9 1485 621 254 13 60 chr4 117975888 117976039 -37654081 + B1F SINE Alu 1 144 -5 9 1485 430 250 190 58 chr4 117976044 117976195 -37653925 + B3A SINE B2 1 167 -31 9 1485 456 35 0 0 chr4 117976195 117976253 -37653867 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1485 430 250 190 58 chr4 117976253 117976275 -37653845 + B3A SINE B2 168 197 -1 9 1485 327 137 0 19 chr4 117976359 117976411 -37653709 + ID SINE ID 33 83 -141 9 1485 240 268 28 0 chr4 117976625 117976696 -37653424 - MER3 DNA MER1_type -14 195 123 9 1485 386 258 78 31 chr4 117976702 117976779 -37653341 + B4A SINE B4 1 83 -209 9 1485 210 274 151 0 chr4 117976779 117976852 -37653268 + B1F SINE Alu 1 84 -65 9 1485 294 106 0 0 chr4 117977070 117977117 -37653003 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 1485 791 202 11 0 chr4 117977408 117977586 -37652534 + CT-rich Low_complexity Low_complexity 1 180 0 9 1485 223 267 0 0 chr4 117978035 117978080 -37652040 - RSINE1 SINE B4 -120 45 1 9 1485 287 279 13 0 chr4 117979539 117979618 -37650502 - RSINE1 SINE B4 -41 124 45 9 1485 198 91 0 0 chr4 117979653 117979686 -37650434 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 9 1485 1033 52 90 0 chr4 117979687 117979821 -37650299 - B1_Mm SINE Alu -1 146 1 9 1485 736 296 44 5 chr4 117979917 117980121 -37649999 - ID_B1 SINE B4 -4 220 9 9 1485 369 176 0 0 chr4 117980481 117980555 -37649565 + CT-rich Low_complexity Low_complexity 1 74 0 9 1485 231 103 0 0 chr4 117980907 117980946 -37649174 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 9 1485 553 289 14 21 chr4 117980948 117981093 -37649027 - ID_B1 SINE B4 0 224 81 9 1485 590 385 39 13 chr4 117982039 117982344 -37647776 + MamGyp-int LTR Gypsy 3755 4067 -995 9 1485 269 299 50 20 chr4 117983174 117983273 -37646847 - MER58A DNA MER1_type -116 108 7 1 1485 2756 52 3 0 chr4 117983359 117983685 -37646435 - ORR1A2 LTR MaLR 0 327 1 1 1485 287 223 71 50 chr4 117983686 117983785 -37646335 + MLT1K LTR MaLR 452 552 -43 1 1485 1217 68 0 0 chr4 117983800 117983947 -37646173 - B1_Mus1 SINE Alu 0 148 2 1 1485 335 338 0 53 chr4 117984084 117984175 -37645945 + RSINE1 SINE B4 1 83 -82 1 1485 1447 84 21 0 chr4 117984175 117984365 -37645755 + B2_Mm2 SINE B2 1 194 -1 1 1485 335 338 0 53 chr4 117984365 117984442 -37645678 + RSINE1 SINE B4 84 160 -5 1 1485 34 65 0 0 chr4 117984456 117984518 -37645602 + AT_rich Low_complexity Low_complexity 1 62 0 1 1485 836 250 59 0 chr4 117984847 117985051 -37645069 + ID_B1 SINE B4 2 217 -7 1 1485 189 0 0 0 chr4 117985051 117985072 -37645048 + (GGA)n Simple_repeat Simple_repeat 2 22 0 1 1485 740 214 5 81 chr4 117985282 117985480 -37644640 - B3A SINE B2 -1 197 15 1 1485 189 107 0 0 chr4 117986073 117986101 -37644019 + (TCC)n Simple_repeat Simple_repeat 1 28 0 1 1485 681 236 35 73 chr4 117986101 117986311 -37643809 - ID_B1 SINE B4 -46 246 40 1 1485 1602 202 95 20 chr4 117986675 117987023 -37643097 + ORR1D1 LTR MaLR 1 374 0 1 1485 435 276 73 0 chr4 117987159 117987282 -37642838 + RSINE1 SINE B4 12 143 -22 1 1485 21 0 0 0 chr4 117988794 117988815 -37641305 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 481 307 60 0 chr4 117988825 117988975 -37641145 - RSINE1 SINE B4 -5 160 2 1 1485 336 297 152 29 chr4 117989072 117989315 -37640805 - B4A SINE B4 -18 274 2 1 1485 283 300 0 0 chr4 117989345 117989415 -37640705 - ID4 SINE ID 0 83 14 1 1485 527 284 0 0 chr4 117989459 117989586 -37640534 - ID_B1 SINE B4 -3 221 95 1 1485 24 0 0 0 chr4 117989588 117989612 -37640508 + AT_rich Low_complexity Low_complexity 1 24 0 1 1485 1430 88 0 15 chr4 117989630 117989827 -37640293 + B2_Mm2 SINE B2 2 195 0 1 1485 398 267 0 49 chr4 117989840 117989962 -37640158 - PB1D10 SINE Alu 0 117 2 1 1485 341 264 15 15 chr4 117990030 117990161 -37639959 - MER20B DNA MER1_type -5 778 648 1 1485 357 159 0 0 chr4 117990161 117990224 -37639896 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1485 2571 116 65 0 chr4 117990242 117990612 -37639508 + ORR1B1 LTR MaLR 1 394 0 1 1485 462 241 16 118 chr4 117990651 117990738 -37639382 + MTEa LTR MaLR 206 289 -90 1 1485 479 256 108 23 chr4 117990738 117990914 -37639206 - B2_Mm2 SINE B2 -1 194 4 1 1485 462 241 16 118 chr4 117990914 117990953 -37639167 + MTEa LTR MaLR 290 319 -60 1 1485 266 333 91 6 chr4 117990954 117991129 -37638991 - MER20B DNA MER1_type -119 664 475 1 1485 243 311 77 10 chr4 117991374 117991478 -37638642 + MER20B DNA MER1_type 30 140 -643 1 1485 303 280 141 39 chr4 117991612 117991768 -37638352 + B4 SINE B4 30 201 -91 1 1485 340 268 125 0 chr4 117991672 117991784 -37638336 + B1F2 SINE Alu 9 134 -15 1 1485 296 24 0 24 chr4 117991788 117991830 -37638290 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1485 277 366 23 127 chr4 117992512 117992812 -37637308 + MLT1K LTR MaLR 143 411 -184 1 1485 294 29 0 0 chr4 117992911 117992946 -37637174 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1485 245 321 0 0 chr4 117993097 117993178 -37636942 + ID4 SINE ID 3 83 0 1 1485 405 195 86 26 chr4 117993285 117993401 -37636719 + L2a LINE L2 3304 3426 0 1 1485 581 235 61 56 chr4 117993423 117993603 -37636517 + B3A SINE B2 2 182 -16 1 1485 416 116 0 28 chr4 117993633 117993704 -37636416 - B1_Mur1 SINE Alu -1 148 80 1 1485 508 234 6 35 chr4 117993718 117993844 -37636276 - B3 SINE B2 -65 128 1 1 1485 472 149 0 0 chr4 117993860 117993934 -37636186 - B1_Mus2 SINE Alu -12 135 62 1 1485 1208 55 0 0 chr4 117993983 117994129 -37635991 + B1_Mus1 SINE Alu 2 147 -1 1 1485 450 191 0 0 chr4 117994172 117994256 -37635864 + B1_Mur2 SINE Alu 65 148 -1 1 1485 381 306 25 20 chr4 117994278 117994411 -37635709 - L2b LINE L2 -209 3178 3047 1 1485 916 161 0 13 chr4 117994867 117995018 -37635102 - B1_Mur2 SINE Alu 0 149 1 1 1485 511 339 20 24 chr4 117995070 117995324 -37634796 + L1M6 LINE L1 1677 1929 -4567 1 1485 808 293 142 37 chr4 117996095 117996474 -37633646 + MTD LTR MaLR 1 419 0 1 1485 385 354 129 26 chr4 117996748 117997204 -37632916 + L1M6 LINE L1 5546 6048 -330 1 1485 902 169 28 23 chr4 117997710 117997886 -37632234 + Lx4B LINE L1 6878 7054 -4 1 1485 833 240 66 10 chr4 117997918 117998116 -37632004 + B3 SINE B2 2 210 -6 1 1485 1070 278 98 30 chr4 117998152 117998428 -37631692 + L1M4 LINE L1 796 1076 -5466 1 1485 2339 136 3 9 chr4 117998428 117998776 -37631344 + ORR1A1 LTR MaLR 1 346 0 1 1485 1070 278 98 30 chr4 117998776 117999073 -37631047 + L1M4 LINE L1 1077 1408 -5134 1 1485 790 313 56 22 chr4 117999106 117999465 -37630655 + L1M4 LINE L1 3073 3443 -3201 1 1485 234 91 0 0 chr4 117999466 117999499 -37630621 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 1485 432 37 0 0 chr4 117999634 117999688 -37630432 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1485 323 282 52 82 chr4 117999788 117999805 -37630315 - ID_B1 SINE B4 0 224 94 1 1485 549 220 85 0 chr4 117999805 117999923 -37630197 - B1_Mur1 SINE Alu -9 140 13 1 1485 908 123 0 21 chr4 118000000 118000141 -37629979 + B1_Mur4 SINE Alu 13 150 0 1 1485 396 245 53 0 chr4 118000142 118000236 -37629884 + L1M4 LINE L1 3079 3177 -2969 2 1485 704 202 0 7 chr4 118000242 118000513 -37629607 + (CATA)n Simple_repeat Simple_repeat 1 268 0 3 1485 180 111 0 0 chr4 118000537 118000564 -37629556 + (TATG)n Simple_repeat Simple_repeat 2 28 0 4 1485 600 199 9 14 chr4 118000568 118000782 -37629338 + (CATA)n Simple_repeat Simple_repeat 1 213 0 5 1485 983 175 18 0 chr4 118000804 118000975 -37629145 + B3 SINE B2 36 209 -7 6 1485 315 211 13 38 chr4 118001143 118001222 -37628898 + ID2 SINE ID 6 82 -1 7 1485 232 250 44 33 chr4 118001222 118001234 -37628886 + ID_B1 SINE B4 6 97 -127 8 1485 713 160 94 25 chr4 118001315 118001475 -37628645 - B3 SINE B2 0 216 46 9 1485 219 114 0 0 chr4 118001496 118001531 -37628589 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1485 669 225 51 51 chr4 118001607 118001785 -37628335 - B3A SINE B2 -11 187 10 1 1485 401 227 58 192 chr4 118001856 118002000 -37628120 + B3 SINE B2 1 138 -78 1 1485 1270 96 6 0 chr4 118002000 118002178 -37627942 - B2_Mm1t SINE B2 -14 179 1 1 1485 401 227 58 192 chr4 118002178 118002273 -37627847 + B3 SINE B2 139 208 -8 1 1485 651 259 116 38 chr4 118002290 118002551 -37627569 + L1M4 LINE L1 4367 4655 -1491 2 1485 916 180 21 26 chr4 118002551 118002745 -37627375 - B2_Mm2 SINE B2 -1 194 2 1 1485 651 259 116 38 chr4 118002745 118002828 -37627292 + L1M4 LINE L1 4656 4738 -1408 2 1485 678 105 0 0 chr4 118003004 118003109 -37627011 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 1 1485 288 275 13 13 chr4 118003109 118003204 -37626916 - ID4 SINE ID -45 107 13 1 1485 486 0 0 0 chr4 118004032 118004086 -37626034 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1485 933 293 86 19 chr4 118005049 118005138 -37624982 + L1M4 LINE L1 4720 4808 -1338 2 1485 1250 77 54 16 chr4 118005138 118005324 -37624796 + B2_Mm1a SINE B2 1 193 0 1 1485 933 293 86 19 chr4 118005324 118005652 -37624468 + L1M4 LINE L1 4809 5165 -981 2 1485 799 220 13 97 chr4 118005652 118005889 -37624231 + B4A SINE B4 2 218 -74 1 1485 540 0 0 0 chr4 118005899 118005959 -37624161 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1485 504 0 0 0 chr4 118005959 118006014 -37624106 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1485 898 186 65 5 chr4 118006014 118006214 -37623906 + B3 SINE B2 5 216 0 2 1485 403 366 98 5 chr4 118006219 118006403 -37623717 + B4A SINE B4 81 281 -11 2 1485 732 94 0 0 chr4 118006528 118006634 -37623486 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 1485 1629 21 0 0 chr4 118006716 118006908 -37623212 - B2_Mm1a SINE B2 -1 192 1 2 1485 587 258 38 0 chr4 118007010 118007142 -37622978 + ID_B1 SINE B4 86 222 -2 2 1485 943 196 9 57 chr4 118007149 118007376 -37622744 + B3 SINE B2 1 216 0 2 1485 3861 93 105 32 chr4 118007407 118008072 -37622048 + RLTR19B LTR ERVK 2 715 0 2 1485 530 352 32 10 chr4 118008078 118008391 -37621729 + L1MA4 LINE L1 5975 6294 -6 2 1485 229 356 58 36 chr4 118008406 118008735 -37621385 + L1MEg LINE L1 858 1193 -4891 3 1485 673 185 20 20 chr4 118008738 118008887 -37621233 + B1_Mur3 SINE Alu 1 149 0 3 1485 698 161 0 24 chr4 118008923 118009050 -37621070 + B1_Mur4 SINE Alu 23 146 -4 3 1485 405 0 0 0 chr4 118009077 118009122 -37620998 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 1485 260 239 28 0 chr4 118009138 118009209 -37620911 - B4A SINE B4 -219 73 1 3 1485 803 221 71 15 chr4 118009344 118009542 -37620578 + B3 SINE B2 1 209 -7 3 1485 263 171 98 0 chr4 118009543 118009625 -37620495 + Lx2 LINE L1 6904 6993 -4 3 1485 261 140 20 0 chr4 118009633 118009683 -37620437 + RLTR11B LTR ERVK 336 386 -67 3 1485 25 51 0 0 chr4 118009711 118009750 -37620370 + AT_rich Low_complexity Low_complexity 1 39 0 3 1485 613 220 138 22 chr4 118009750 118009931 -37620189 - B3 SINE B2 -10 206 5 3 1485 203 163 47 0 chr4 118009936 118009979 -37620141 + T-rich Low_complexity Low_complexity 3 47 0 4 1485 485 167 54 89 chr4 118009980 118010092 -37620028 - B1_Mur2 SINE Alu 0 149 42 4 1485 260 254 0 56 chr4 118010029 118010100 -37620020 - MT2B LTR ERVL -344 257 191 4 1485 920 59 42 56 chr4 118010353 118010496 -37619624 + B1_Mm SINE Alu 1 141 -6 4 1485 222 37 0 0 chr4 118010500 118010527 -37619593 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 4 1485 419 276 94 0 chr4 118010537 118010664 -37619456 - B1_Mur2 SINE Alu -10 139 1 4 1485 652 263 45 15 chr4 118011345 118011546 -37618574 + B4A SINE B4 86 292 0 4 1485 227 274 6 0 chr4 118011547 118011711 -37618409 + (CA)n Simple_repeat Simple_repeat 2 166 0 4 1485 490 289 33 0 chr4 118012118 118012270 -37617850 + B3A SINE B2 1 157 -41 4 1485 349 279 66 114 chr4 118012344 118012510 -37617610 + B4 SINE B4 4 161 -131 4 1485 225 0 0 0 chr4 118012542 118012567 -37617553 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1485 825 235 61 5 chr4 118012584 118012781 -37617339 + Lx5 LINE L1 6137 6344 -706 5 1485 1451 254 62 51 chr4 118012865 118013318 -37616802 + Lx6 LINE L1 6947 7404 -56 5 1485 1017 206 35 0 chr4 118013413 118013612 -37616508 + B3 SINE B2 2 207 -9 5 1485 323 225 36 36 chr4 118013643 118013726 -37616394 + RSINE1 SINE B4 74 156 -9 5 1485 470 240 0 6 chr4 118013754 118013926 -37616194 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1485 966 227 63 0 chr4 118014049 118014256 -37615864 + MER2 DNA MER2_type 116 335 -10 5 1485 361 274 108 25 chr4 118014262 118014419 -37615701 + L1MEd LINE L1 7 176 -5943 5 1485 742 297 60 83 chr4 118014932 118015318 -37614802 - Lx8 LINE L1 -7 7466 7090 5 1485 519 17 0 0 chr4 118015356 118015416 -37614704 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1485 557 290 6 36 chr4 118015420 118015588 -37614532 + B3A SINE B2 2 164 -34 6 1485 459 52 0 0 chr4 118015589 118015647 -37614473 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1485 277 157 20 0 chr4 118015904 118015955 -37614165 - ORR1B1 LTR MaLR 0 367 316 6 1485 180 0 0 0 chr4 118015955 118015975 -37614145 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 6 1485 423 0 0 0 chr4 118015976 118016023 -37614097 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1485 747 127 8 35 chr4 118016031 118016199 -37613921 - B1_Mur3 SINE Alu 0 150 2 6 1485 1287 133 68 38 chr4 118016238 118016503 -37613617 - ORR1B1 LTR MaLR -121 273 1 6 1485 318 341 0 11 chr4 118016503 118016591 -37613529 + PB1 SINE Alu 22 108 -19 6 1485 918 256 9 0 chr4 118016890 118017105 -37613015 + ID_B1 SINE B4 1 217 -7 6 1485 475 258 23 41 chr4 118017124 118017273 -37612847 + B1F2 SINE Alu 1 143 -6 6 1485 369 271 31 39 chr4 118017263 118017390 -37612730 + RSINE1 SINE B4 21 146 -19 6 1485 315 308 98 0 chr4 118017612 118017755 -37612365 - L1MC3 LINE L1 -7 7778 7622 7 1485 426 150 94 0 chr4 118017755 118017848 -37612272 - B1_Mm SINE Alu -8 109 10 7 1485 684 258 50 0 chr4 118017903 118018085 -37612035 - B3A SINE B2 -7 191 1 7 1485 303 212 77 66 chr4 118018133 118018224 -37611896 - ID_B1 SINE B4 -34 190 99 7 1485 668 294 62 43 chr4 118018224 118018841 -37611279 - L1MC3 LINE L1 -162 7833 7040 7 1485 341 306 7 71 chr4 118018881 118019036 -37611084 - B1_Mur4 SINE Alu -5 145 1 7 1485 363 233 15 77 chr4 118019436 118019566 -37610554 - L1MC3 LINE L1 -1297 6745 6624 7 1485 506 279 21 118 chr4 118019605 118019792 -37610328 + MTEa LTR MaLR 1 169 -210 7 1485 261 279 37 37 chr4 118020392 118020474 -37609646 + MTEa LTR MaLR 298 379 0 7 1485 540 324 19 29 chr4 118020788 118020998 -37609122 + LTR33 LTR ERVL 304 511 -4 7 1485 625 243 55 70 chr4 118021773 118021972 -37608148 + B4A SINE B4 38 233 -59 7 1485 431 340 7 27 chr4 118022038 118022186 -37607934 + RSINE1 SINE B4 2 146 -19 7 1485 331 169 39 78 chr4 118022222 118022299 -37607821 + B4A SINE B4 214 287 -5 7 1485 236 175 63 0 chr4 118022314 118022377 -37607743 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1485 449 272 62 28 chr4 118022441 118022619 -37607501 + MER5A DNA MER1_type 4 187 -2 8 1485 1161 296 80 63 chr4 118023060 118023674 -37606446 - MLT1E3 LTR MaLR 0 624 1 8 1485 242 176 17 50 chr4 118023874 118023934 -37606186 + B1_Mur3 SINE Alu 78 135 -14 8 1485 214 323 150 10 chr4 118023955 118024055 -37606065 - B3 SINE B2 -11 205 92 8 1485 481 291 8 0 chr4 118024534 118024668 -37605452 + LTR33 LTR ERVL 376 510 -5 8 1485 360 289 30 23 chr4 118024674 118024805 -37605315 - LTR79 LTR ERVL -55 472 341 8 1485 926 217 11 5 chr4 118024923 118025113 -37605007 - B3 SINE B2 -13 203 13 8 1485 887 167 131 68 chr4 118025254 118025326 -37604794 + MTC LTR MaLR 10 70 -351 8 1485 1141 56 0 0 chr4 118025326 118025470 -37604650 + B1_Mus2 SINE Alu 1 144 -3 8 1485 222 37 0 0 chr4 118025470 118025497 -37604623 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1485 887 167 131 68 chr4 118025497 118025629 -37604491 + MTC LTR MaLR 71 227 -194 8 1485 1137 182 5 27 chr4 118025946 118026166 -37603954 + B3 SINE B2 1 215 -1 9 1485 820 174 7 14 chr4 118026185 118026331 -37603789 + B1_Mus2 SINE Alu 1 145 -2 9 1485 1209 159 10 230 chr4 118027389 118027806 -37602314 - ORR1D1 LTR MaLR -49 325 1 9 1485 312 27 0 0 chr4 118028068 118028105 -37602015 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1485 1078 81 0 20 chr4 118028588 118028739 -37601381 + B1_Mus1 SINE Alu 1 148 0 9 1485 332 197 39 13 chr4 118028800 118028877 -37601243 + RSINE1 SINE B4 1 79 -86 9 1485 566 321 69 11 chr4 118029250 118029527 -37600593 - L1M5 LINE L1 -524 5716 5424 9 1485 216 320 40 0 chr4 118029791 118029866 -37600254 + ID4 SINE ID 3 80 -3 9 1485 754 176 49 0 chr4 118030573 118030715 -37599405 - B1_Mur4 SINE Alu -1 149 1 9 1485 415 283 0 9 chr4 118030718 118030825 -37599295 - PB1D10 SINE Alu -1 116 11 1 1485 586 205 39 26 chr4 118030910 118031065 -37599055 + B3 SINE B2 59 215 -1 1 1485 3837 49 22 2 chr4 118031265 118031758 -37598362 - RLTR1C LTR ERV1 0 503 1 1 1485 522 0 0 0 chr4 118031773 118031831 -37598289 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1 1485 862 207 42 0 chr4 118033689 118033882 -37596238 + B3 SINE B2 1 201 -15 1 1485 261 83 0 0 chr4 118033899 118033935 -37596185 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1485 231 284 0 57 chr4 118039222 118039331 -37590789 - L2c LINE L2 -70 3317 3193 1 1485 192 371 86 0 chr4 118040519 118040635 -37589485 + MIR3 SINE MIR 11 136 -72 1 1485 422 241 19 0 chr4 118040731 118040839 -37589281 + ID_B1 SINE B4 108 217 -7 1 1485 378 184 232 39 chr4 118042706 118042887 -37587233 - B3 SINE B2 0 216 1 1 1485 744 12 0 0 chr4 118043579 118043664 -37586456 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1485 549 0 0 0 chr4 118043664 118043724 -37586396 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1485 238 189 89 63 chr4 118044206 118044285 -37585835 + RLTR25B LTR ERVK 429 509 -519 1 1485 731 38 9 28 chr4 118044219 118044327 -37585793 + B1_Mm SINE Alu 42 147 0 1 1485 222 62 0 0 chr4 118044327 118044359 -37585761 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1485 219 276 64 37 chr4 118047009 118047134 -37582986 + MIRc SINE MIR 15 146 -122 1 1485 1296 113 17 39 chr4 118047204 118047434 -37582686 + URR1B DNA MER1_type 1 225 0 1 1485 986 252 128 14 chr4 118049612 118049970 -37580150 + MTD LTR MaLR 5 403 -16 1 1485 1245 14 0 0 chr4 118051240 118051387 -37578733 + B1_Mus2 SINE Alu 1 147 0 1 1485 618 230 64 7 chr4 118054672 118054812 -37575308 + B1_Mur1 SINE Alu 1 148 -1 1 1485 252 59 0 0 chr4 118054814 118054848 -37575272 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1485 858 20 0 0 chr4 118054894 118054994 -37575126 + (TC)n Simple_repeat Simple_repeat 2 101 0 1 1485 317 248 115 8 chr4 118054994 118055116 -37575004 - B1_Mur1 SINE Alu -14 135 1 1 1485 559 214 50 6 chr4 118056899 118057059 -37573061 + Lx2B LINE L1 6833 6999 -1 1 1485 330 290 161 0 chr4 118066915 118067039 -37563081 - MER5A1 DNA MER1_type -4 162 19 1 1485 328 319 75 14 chr4 118067053 118067199 -37562921 + MER58A DNA MER1_type 22 176 -48 1 1485 1203 282 58 43 chr4 118067920 118068289 -37561831 + L1MA5 LINE L1 5417 5790 -510 1 1485 351 195 304 41 chr4 118068289 118068460 -37561660 - B3 SINE B2 0 216 1 1 1485 1203 286 60 48 chr4 118068460 118068693 -37561427 + L1MA5 LINE L1 5791 6023 -277 1 1485 1186 44 0 0 chr4 118068715 118068852 -37561268 + B1_Mm SINE Alu 1 137 -10 1 1485 407 260 185 17 chr4 118069478 118069659 -37560461 - MIR SINE MIR -50 218 2 1 1485 229 258 45 0 chr4 118069905 118069971 -37560149 + MLT1L LTR MaLR 538 606 -4 1 1485 379 295 108 0 chr4 118072739 118072868 -37557252 + B1F SINE Alu 1 143 -6 1 1485 396 294 67 0 chr4 118072752 118072871 -37557249 + ID_B1 SINE B4 95 221 -3 1 1485 252 289 106 0 chr4 118073055 118073159 -37556961 + B1F SINE Alu 34 148 -1 1 1485 254 312 25 0 chr4 118073168 118073248 -37556872 + ID2 SINE ID 2 83 0 1 1485 357 272 36 72 chr4 118073255 118073366 -37556754 + PB1D10 SINE Alu 1 107 -10 1 1485 243 0 0 0 chr4 118073366 118073393 -37556727 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1485 1098 58 72 0 chr4 118074002 118074140 -37555980 + B1_Mus1 SINE Alu 1 148 0 1 1485 601 246 0 0 chr4 118074739 118074857 -37555263 + ID_B1 SINE B4 92 209 -15 1 1485 1782 251 28 14 chr4 118075678 118076110 -37554010 + Lx6 LINE L1 7022 7459 -1 1 1485 273 29 0 0 chr4 118076132 118076166 -37553954 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 1 1485 435 225 1 68 chr4 118076182 118076325 -37553795 + B3A SINE B2 70 200 -16 1 1485 487 238 3 37 chr4 118076433 118077072 -37553048 + (CA)n Simple_repeat Simple_repeat 1 617 0 1 1485 457 247 3 61 chr4 118077092 118077397 -37552723 + (CA)n Simple_repeat Simple_repeat 1 287 0 1 1485 433 300 36 36 chr4 118077447 118077613 -37552507 + MIRb SINE MIR 63 228 -40 1 1485 687 246 52 31 chr4 118077697 118077890 -37552230 + B3A SINE B2 2 198 0 1 1485 1488 64 32 0 chr4 118078341 118078529 -37551591 - B2_Mm2 SINE B2 0 195 2 1 1485 411 322 40 45 chr4 118079549 118079729 -37550391 + MER5A DNA MER1_type 2 171 -7 1 1485 284 324 51 24 chr4 118079818 118079963 -37550157 + MIRb SINE MIR 5 150 -58 1 1485 246 217 0 0 chr4 118080807 118080853 -37549267 - RSINE1 SINE B4 -16 149 104 1 1485 365 308 138 0 chr4 118080927 118081057 -37549063 + MIR SINE MIR 115 262 0 1 1485 215 267 131 56 chr4 118084645 118084752 -37545368 + BC1_Mm scRNA scRNA 1 115 -37 1 1485 548 188 74 33 chr4 118085478 118085599 -37544521 + RSINE1 SINE B4 2 127 -38 1 1485 427 167 0 0 chr4 118085774 118085846 -37544274 + RodERV21-int LTR ERV1 3 74 -4917 1 1485 402 225 0 27 chr4 118085931 118085971 -37544149 + ORR1B1-int LTR MaLR 613 648 -861 1 1485 899 35 0 0 chr4 118085971 118086086 -37544034 + B1_Mm SINE Alu 2 116 -31 1 1485 267 294 58 23 chr4 118086015 118086102 -37544018 + RLTR25A LTR ERVK 522 611 -492 1 1485 732 257 88 4 chr4 118087476 118087703 -37542417 + MIRb SINE MIR 15 260 -8 1 1485 1252 41 0 0 chr4 118090420 118090566 -37539554 + B1_Mus2 SINE Alu 2 147 0 1 1485 204 326 90 21 chr4 118091330 118091474 -37538646 + L2 LINE L2 2037 2190 -1229 1 1485 279 0 0 0 chr4 118092162 118092193 -37537927 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1485 351 0 0 0 chr4 118092193 118092231 -37537889 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1485 463 250 66 29 chr4 118092729 118092865 -37537255 - B1F1 SINE Alu -8 141 1 1 1485 335 194 45 0 chr4 118093170 118093237 -37536883 - PB1D7 SINE Alu -13 107 38 1 1485 1076 129 94 0 chr4 118093261 118093432 -37536688 - B2_Mm2 SINE B2 -8 187 1 1 1485 545 214 18 0 chr4 118093783 118093895 -37536225 + PB1D9 SINE Alu 7 120 0 1 1485 208 346 73 12 chr4 118093945 118094027 -37536093 + MIR SINE MIR 38 124 -138 1 1485 1033 65 51 0 chr4 118094328 118094466 -37535654 - B1_Mus1 SINE Alu -2 146 2 1 1485 1410 76 5 5 chr4 118095051 118095236 -37534884 - B2_Mm1a SINE B2 -7 186 2 1 1485 546 302 80 49 chr4 118095565 118095644 -37534476 + B4A SINE B4 1 70 -222 1 1485 1449 69 16 0 chr4 118095644 118095833 -37534287 - B2_Mm1t SINE B2 0 193 2 1 185 546 302 80 49 chr4 118095833 118095979 -37534141 + B4A SINE B4 71 233 -59 1 1486 604 237 0 0 chr4 118095980 118096098 -37534022 + B3 SINE B2 2 119 -97 1 1486 23 33 0 0 chr4 118096129 118096159 -37533961 + AT_rich Low_complexity Low_complexity 1 30 0 1 1486 216 306 0 0 chr4 118096203 118096265 -37533855 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1486 456 302 0 0 chr4 118096911 118097017 -37533103 + PB1D10 SINE Alu 4 109 -8 1 1486 618 14 0 0 chr4 118097466 118097537 -37532583 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1486 541 252 0 0 chr4 118097714 118097821 -37532299 + PB1D10 SINE Alu 2 108 -9 1 1486 600 53 0 0 chr4 118097821 118097897 -37532223 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1486 567 0 0 0 chr4 118098097 118098160 -37531960 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1486 287 274 52 10 chr4 118098669 118098765 -37531355 - MIR SINE MIR -26 236 137 1 1486 252 0 0 0 chr4 118099473 118099501 -37530619 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1486 25 0 0 0 chr4 118100672 118100697 -37529423 + GC_rich Low_complexity Low_complexity 1 25 0 1 1486 236 30 30 0 chr4 118100882 118100915 -37529205 + (CCCTG)n Simple_repeat Simple_repeat 3 36 0 1 1486 364 253 151 75 chr4 118105808 118106073 -37524047 - L1MB7 LINE L1 -20 6164 5880 1 1486 1062 43 34 54 chr4 118106554 118106703 -37523417 - B1_Mus1 SINE Alu 0 148 3 1 1486 253 258 191 11 chr4 118106818 118106912 -37523208 + PB1D10 SINE Alu 1 111 -6 1 1486 348 24 0 0 chr4 118106921 118106962 -37523158 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 1 1486 409 288 198 17 chr4 118107579 118107936 -37522184 - RLTR12B LTR ERVK -55 473 52 1 1486 576 0 0 0 chr4 118110291 118110355 -37519765 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1486 180 0 0 0 chr4 118110355 118110374 -37519746 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1486 495 0 0 0 chr4 118110374 118110428 -37519692 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1486 532 184 182 8 chr4 118110742 118110868 -37519252 - B1_Mur1 SINE Alu 0 149 2 1 1486 495 205 185 0 chr4 118110960 118111111 -37519009 + B3A SINE B2 1 179 -19 1 1486 21 0 0 0 chr4 118111123 118111144 -37518976 + AT_rich Low_complexity Low_complexity 1 21 0 1 1486 781 240 38 33 chr4 118111152 118111363 -37518757 + B3 SINE B2 1 212 -4 1 1486 23 33 0 0 chr4 118111414 118111444 -37518676 + AT_rich Low_complexity Low_complexity 1 30 0 1 1486 1204 22 0 0 chr4 118111446 118111581 -37518539 + B1_Mus2 SINE Alu 2 136 -11 1 1486 294 50 0 0 chr4 118111581 118111621 -37518499 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1486 297 0 0 0 chr4 118111658 118111691 -37518429 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1486 1113 75 0 0 chr4 118111693 118111840 -37518280 + B1_Mus1 SINE Alu 2 148 0 1 1486 331 202 59 12 chr4 118111998 118112066 -37518054 - ID_B1 SINE B4 -7 217 147 1 1486 1453 55 0 0 chr4 118112066 118112248 -37517872 - B2_Mm1a SINE B2 -10 183 2 2 1486 331 202 59 12 chr4 118112248 118112264 -37517856 - ID_B1 SINE B4 -78 146 129 1 1486 267 31 0 0 chr4 118112264 118112296 -37517824 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1486 743 156 82 0 chr4 118112296 118112431 -37517689 - B1_Mus2 SINE Alu 0 147 2 2 1486 497 151 10 31 chr4 118112477 118112573 -37517547 + PB1D9 SINE Alu 26 119 -1 2 1486 309 109 0 0 chr4 118112769 118112815 -37517305 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1486 1005 82 0 88 chr4 118112815 118112975 -37517145 - B1_Mus2 SINE Alu 0 147 2 2 1486 210 71 0 0 chr4 118113539 118113567 -37516553 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2 1486 547 269 62 88 chr4 118113826 118114168 -37515952 - MLT1C LTR MaLR -29 438 39 2 1486 1359 76 22 0 chr4 118114168 118114353 -37515767 + B2_Mm1t SINE B2 1 189 -4 2 1486 386 295 73 154 chr4 118114353 118114394 -37515726 - MLT1C LTR MaLR -352 38 9 2 1486 233 308 121 15 chr4 118114399 118114531 -37515589 - LTR33 LTR ERVL -369 146 1 2 1486 325 324 67 34 chr4 118114668 118114847 -37515273 + LTR33 LTR ERVL 328 512 -3 2 1486 372 271 131 29 chr4 118115315 118115490 -37514630 - MIR SINE MIR -62 200 8 2 1486 424 208 31 0 chr4 118115747 118115843 -37514277 + B1_Mur1 SINE Alu 51 149 0 2 1486 374 156 0 0 chr4 118116350 118116414 -37513706 + B1_Mur3 SINE Alu 74 137 -12 2 1486 324 0 0 0 chr4 118116414 118116450 -37513670 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1486 672 181 6 94 chr4 118117402 118117561 -37512559 + B1F SINE Alu 1 145 -4 2 1486 1148 68 0 0 chr4 118120221 118120368 -37509752 - B1_Mus1 SINE Alu 0 148 2 2 1486 746 237 121 0 chr4 118120378 118120568 -37509552 - B3 SINE B2 0 216 4 2 1486 32 26 0 0 chr4 118120568 118120607 -37509513 + AT_rich Low_complexity Low_complexity 1 39 0 2 1486 522 119 0 0 chr4 118121933 118122017 -37508103 + (T)n Simple_repeat Simple_repeat 1 84 0 2 1486 1186 54 0 0 chr4 118122017 118122164 -37507956 - B1_Mus2 SINE Alu 0 147 1 2 1486 523 205 80 24 chr4 118122521 118122646 -37507474 - B1_Mur1 SINE Alu -13 136 5 2 1486 271 296 1 22 chr4 118123225 118123315 -37506805 - B1F SINE Alu -17 103 15 2 1486 257 403 27 11 chr4 118123349 118123532 -37506588 - L2 LINE L2 -571 2848 2663 2 1486 479 195 105 9 chr4 118123541 118123655 -37506465 - B1F2 SINE Alu -13 136 12 2 1486 504 0 0 0 chr4 118123758 118123814 -37506306 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1486 760 142 50 36 chr4 118123877 118124016 -37506104 + B1_Mur3 SINE Alu 9 149 0 2 1486 1161 118 0 0 chr4 118124020 118124198 -37505922 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1486 681 12 0 0 chr4 118124198 118124273 -37505847 + (GAA)n Simple_repeat Simple_repeat 2 76 0 2 1486 216 0 0 0 chr4 118124273 118124297 -37505823 + (CGA)n Simple_repeat Simple_repeat 2 25 0 2 1486 732 48 97 0 chr4 118124297 118124400 -37505720 - B1_Mus1 SINE Alu -27 121 9 2 1486 1214 91 0 11 chr4 118124425 118124444 -37505676 - B2_Mm2 SINE B2 -19 176 158 2 1486 216 0 0 0 chr4 118124444 118124468 -37505652 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1486 1214 91 0 11 chr4 118124468 118124625 -37505495 - B2_Mm2 SINE B2 -38 157 3 2 1486 315 0 0 0 chr4 118124836 118124871 -37505249 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2 1486 770 154 0 0 chr4 118124893 118125010 -37505110 + B1_Mur1 SINE Alu 25 141 -8 2 1486 2416 80 6 0 chr4 118125093 118125418 -37504702 + ORR1A2 LTR MaLR 1 327 0 2 1486 663 228 7 20 chr4 118125513 118125661 -37504459 - B1_Mur4 SINE Alu 0 150 5 2 1486 390 219 83 42 chr4 118125699 118125824 -37504296 - B4 SINE B4 0 292 78 2 1486 237 352 95 0 chr4 118125943 118126048 -37504072 - B4 SINE B4 -152 140 26 2 1486 557 221 26 52 chr4 118126246 118126399 -37503721 + RSINE1 SINE B4 5 153 -12 2 1486 817 163 7 26 chr4 118126432 118126583 -37503537 - B1_Mur4 SINE Alu -1 149 2 2 1486 1135 50 0 0 chr4 118126619 118126760 -37503360 - B1_Mm SINE Alu -6 141 1 2 1486 311 262 38 0 chr4 118126789 118126869 -37503251 + RMER30 DNA MER1_type 119 201 -1 2 1486 958 99 73 52 chr4 118127404 118127595 -37502525 - B2_Mm2 SINE B2 0 195 1 2 1486 743 32 0 11 chr4 118127598 118127693 -37502427 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 2 1486 1036 88 123 0 chr4 118128800 118128971 -37501149 - B2_Mm2 SINE B2 0 195 4 2 1486 225 266 74 11 chr4 118130753 118130848 -37499272 + MER5A1 DNA MER1_type 64 164 -2 2 1486 693 24 0 0 chr4 118130928 118131011 -37499109 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1486 307 258 125 31 chr4 118131524 118131620 -37498500 + L2 LINE L2 2326 2430 -989 2 1486 1110 55 14 0 chr4 118131633 118131778 -37498342 + B1_Mus1 SINE Alu 2 148 0 2 1486 543 234 23 15 chr4 118131813 118131943 -37498177 + B1F SINE Alu 18 148 -1 2 1486 294 290 0 131 chr4 118131985 118132092 -37498028 + PB1 SINE Alu 27 119 -8 2 1486 745 173 15 0 chr4 118132108 118132241 -37497879 + B1_Mur1 SINE Alu 1 135 -14 2 1486 639 0 0 0 chr4 118132245 118132316 -37497804 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 1486 198 330 127 37 chr4 118132357 118132656 -37497464 + L2 LINE L2 2502 2827 -592 2 1486 291 324 18 62 chr4 118132678 118132790 -37497330 - RSINE1 SINE B4 -15 150 44 2 1486 6128 45 3 1 chr4 118132801 118133581 -37496539 - L1Md_F2 LINE L1 0 6582 5802 2 1486 183 333 0 0 chr4 118133647 118133701 -37496419 + L2 LINE L2 2858 2911 -508 2 1486 698 252 63 91 chr4 118134550 118134640 -37495480 + B4 SINE B4 4 87 -205 2 1486 782 189 0 0 chr4 118134640 118134772 -37495348 + B1_Mur2 SINE Alu 1 132 -17 2 1486 698 252 63 91 chr4 118134772 118134934 -37495186 + B4 SINE B4 88 249 -43 2 1486 235 130 37 0 chr4 118134939 118134993 -37495127 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 1486 702 306 69 22 chr4 118135360 118135634 -37494486 - B4A SINE B4 -4 288 2 2 1486 234 208 18 28 chr4 118136042 118136060 -37494060 + ORR1B1-int LTR MaLR 632 648 -861 2 1486 716 42 10 0 chr4 118136060 118136156 -37493964 + B1_Mus1 SINE Alu 2 98 -50 2 1486 300 155 25 101 chr4 118136098 118136177 -37493943 + RLTR25B LTR ERVK 441 513 -515 2 1486 414 196 152 0 chr4 118136166 118136258 -37493862 + B3A SINE B2 24 129 -69 2 1486 693 0 0 0 chr4 118136296 118136373 -37493747 + (GAA)n Simple_repeat Simple_repeat 1 77 0 2 1486 388 270 32 38 chr4 118136832 118136972 -37493148 + B1F SINE Alu 6 144 -5 2 1486 813 224 0 18 chr4 118136974 118137138 -37492982 - B3A SINE B2 -36 162 2 2 1486 219 351 61 9 chr4 118137555 118137670 -37492450 - MIRb SINE MIR -123 145 25 2 1486 382 240 152 34 chr4 118137674 118137851 -37492269 - B3A SINE B2 0 198 1 2 1486 321 117 0 0 chr4 118138222 118138282 -37491838 + (C)n Simple_repeat Simple_repeat 1 60 0 2 1486 503 271 111 19 chr4 118138877 118139084 -37491036 + MIR SINE MIR 3 228 -34 2 1486 1206 111 32 5 chr4 118139112 118139302 -37490818 - B2_Mm2 SINE B2 0 195 1 2 1486 377 277 118 21 chr4 118139541 118139553 -37490567 - RSINE1 SINE B4 -4 161 150 2 1486 186 43 0 0 chr4 118139553 118139576 -37490544 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1486 377 277 118 21 chr4 118139576 118139707 -37490413 - RSINE1 SINE B4 -16 149 4 2 1486 773 282 18 25 chr4 118139708 118139939 -37490181 - B4A SINE B4 -60 232 3 2 1486 748 290 72 0 chr4 118139942 118140163 -37489957 - L1M4 LINE L1 -1360 4786 4550 2 1486 237 254 16 0 chr4 118140415 118140478 -37489642 + L2 LINE L2 2749 2812 -607 2 1486 360 296 118 14 chr4 118140493 118140637 -37489483 + RSINE1 SINE B4 3 161 -4 2 1486 584 228 20 26 chr4 118140822 118140975 -37489145 - B3A SINE B2 0 198 47 2 1486 21 0 0 0 chr4 118141375 118141396 -37488724 + AT_rich Low_complexity Low_complexity 1 21 0 2 1486 2854 275 65 79 chr4 118141420 118142568 -37487552 - Lx5 LINE L1 -81 6969 5838 2 1486 1497 186 0 0 chr4 118142564 118142843 -37487277 + L1_Mur2 LINE L1 4945 5223 -654 2 1486 773 269 67 0 chr4 118142848 118143056 -37487064 - ID_B1 SINE B4 0 224 3 2 1486 27 29 0 0 chr4 118143065 118143099 -37487021 + AT_rich Low_complexity Low_complexity 1 34 0 2 1486 198 0 0 0 chr4 118143100 118143122 -37486998 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1486 287 219 0 226 chr4 118144220 118144344 -37485776 + B1_Mur1 SINE Alu 42 137 -12 2 1486 230 81 27 0 chr4 118144424 118144461 -37485659 + (TCCCC)n Simple_repeat Simple_repeat 2 39 0 2 1486 871 158 0 0 chr4 118144522 118144668 -37485452 - B1_Mus1 SINE Alu -2 146 1 2 1486 437 115 13 0 chr4 118145810 118145888 -37484232 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1486 288 273 0 0 chr4 118145888 118145954 -37484166 - B4A SINE B4 -224 68 3 2 1486 797 274 19 9 chr4 118146003 118146217 -37483903 - B3 SINE B2 0 216 1 2 1486 373 262 206 7 chr4 118146244 118146390 -37483730 - MIR SINE MIR -14 248 74 2 1486 227 182 55 0 chr4 118147241 118147296 -37482824 + CT-rich Low_complexity Low_complexity 5 62 0 2 1486 581 269 30 0 chr4 118147306 118147440 -37482680 - B1F1 SINE Alu -6 143 6 2 1486 235 286 150 8 chr4 118147728 118147855 -37482265 + L2 LINE L2 2351 2495 -924 2 1486 188 274 0 73 chr4 118149310 118149365 -37480755 - L2b LINE L2 -19 3356 3306 2 1486 252 86 0 0 chr4 118150145 118150180 -37479940 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 2 1486 1119 61 0 7 chr4 118150644 118150792 -37479328 - B1_Mus1 SINE Alu 0 148 2 2 1486 388 75 0 4 chr4 118150812 118150874 -37479246 + B1_Mur4 SINE Alu 68 149 -1 2 1486 335 255 170 0 chr4 118153627 118153721 -37476399 - MIRb SINE MIR -114 154 45 2 1486 253 345 116 9 chr4 118154300 118154498 -37475622 - MIRb SINE MIR -19 249 28 3 1486 324 0 0 0 chr4 118155718 118155754 -37474366 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1486 375 23 0 0 chr4 118155754 118155797 -37474323 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1486 423 267 0 0 chr4 118155820 118155906 -37474214 - B1F SINE Alu -60 89 4 3 1486 213 39 0 0 chr4 118156565 118156591 -37473529 + (TGG)n Simple_repeat Simple_repeat 3 28 0 3 1486 1136 55 14 0 chr4 118157622 118157768 -37472352 - B1_Mus1 SINE Alu 0 148 1 3 1486 351 278 118 64 chr4 118160530 118160755 -37469365 - MIR SINE MIR -1 261 33 3 1486 467 71 35 12 chr4 118160778 118160864 -37469256 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 3 1486 985 95 0 87 chr4 118160864 118161025 -37469095 - B1_Mus1 SINE Alu 0 148 2 3 1486 213 39 0 0 chr4 118161447 118161473 -37468647 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1486 753 153 61 0 chr4 118161473 118161604 -37468516 - B1_Mur2 SINE Alu -10 139 1 3 1486 180 111 0 0 chr4 118161773 118161800 -37468320 + (ATG)n Simple_repeat Simple_repeat 1 27 0 3 1486 402 260 23 16 chr4 118161823 118161952 -37468168 - L1MB4 LINE L1 -1 6179 6050 3 1486 251 219 186 32 chr4 118161954 118162073 -37468047 - B1_Mm SINE Alu 0 147 1 3 1486 265 200 31 0 chr4 118162073 118162138 -37467982 - L1MB4 LINE L1 -136 6035 5969 3 1486 207 0 0 0 chr4 118162766 118162789 -37467331 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1486 276 54 0 0 chr4 118163081 118163118 -37467002 - 5S rRNA rRNA -84 37 1 3 1486 4197 22 2 0 chr4 118163650 118164142 -37465978 - MT2_Mm LTR ERVL 0 493 1 3 1486 284 26 0 0 chr4 118164142 118164180 -37465940 - MERVL-int LTR ERVL 0 5485 5448 3 1486 379 167 46 35 chr4 118164180 118164267 -37465853 - ORR1A3-int LTR MaLR -1323 640 553 3 1486 32146 12 11 0 chr4 118164267 118169587 -37460533 - MERVL-int LTR ERVL -125 5360 1 3 1486 4197 22 2 0 chr4 118169587 118170079 -37460041 - MT2_Mm LTR ERVL 0 493 1 3 1486 440 234 37 9 chr4 118170824 118170932 -37459188 - B1F2 SINE Alu -18 131 21 3 1486 534 281 72 0 chr4 118170933 118171072 -37459048 - RSINE1 SINE B4 -14 151 3 3 1486 998 220 9 27 chr4 118171754 118171974 -37458146 - B3 SINE B2 0 216 1 3 1486 1357 74 11 5 chr4 118172183 118172374 -37457746 + B2_Mm2 SINE B2 1 192 -3 3 1486 21 0 0 0 chr4 118173098 118173119 -37457001 + GC_rich Low_complexity Low_complexity 1 21 0 3 1486 362 181 28 9 chr4 118173355 118173461 -37456659 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1486 485 258 117 36 chr4 118173509 118173758 -37456362 - B4A SINE B4 -22 270 2 3 1486 720 241 75 50 chr4 118173787 118173948 -37456172 - B3 SINE B2 -10 206 40 3 1486 1160 74 90 6 chr4 118173948 118173968 -37456152 - B2_Mm2 SINE B2 -3 192 167 3 1486 270 0 0 0 chr4 118173968 118173998 -37456122 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 1486 1160 74 90 6 chr4 118173998 118174154 -37455966 - B2_Mm2 SINE B2 -29 166 1 3 1486 720 241 75 50 chr4 118174154 118174193 -37455927 - B3 SINE B2 -177 39 1 3 1486 267 31 0 0 chr4 118174245 118174277 -37455843 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1486 733 196 14 0 chr4 118174393 118174531 -37455589 - B1_Mur2 SINE Alu -8 141 2 3 1486 750 214 16 27 chr4 118175543 118175726 -37454394 + B3A SINE B2 1 181 -17 3 1486 276 53 0 0 chr4 118175788 118175826 -37454294 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1486 1121 89 0 0 chr4 118175827 118175984 -37454136 - B2_Mm2 SINE B2 -37 158 2 3 1486 576 319 121 18 chr4 118175984 118176373 -37453747 - L1MC3 LINE L1 -27 7758 7330 3 1486 377 199 233 22 chr4 118176389 118176552 -37453568 - L1MC3 LINE L1 -515 7367 7075 3 1486 493 212 152 0 chr4 118176616 118176748 -37453372 - RSINE1 SINE B4 -13 152 1 3 1486 455 320 90 0 chr4 118177059 118177143 -37452977 - L1MC3 LINE L1 -1054 6731 6639 3 1486 342 0 0 0 chr4 118177143 118177181 -37452939 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1486 455 320 90 0 chr4 118177181 118177296 -37452824 - L1MC3 LINE L1 -1147 6638 6516 3 1486 863 118 0 0 chr4 118177769 118177899 -37452221 + B1_Mus2 SINE Alu 13 142 -5 3 1486 204 97 0 0 chr4 118177899 118177930 -37452190 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 3 1486 528 288 99 12 chr4 118177933 118178095 -37452025 + B3A SINE B2 27 202 -14 3 1486 183 80 0 0 chr4 118178118 118178143 -37451977 + (GGAGAA)n Simple_repeat Simple_repeat 5 29 0 3 1486 625 297 91 0 chr4 118178360 118178569 -37451551 + B4A SINE B4 3 230 -62 3 1486 853 254 9 14 chr4 118178569 118178785 -37451335 + B3 SINE B2 1 215 -1 3 1486 256 342 13 0 chr4 118178830 118178906 -37451214 + B4A SINE B4 214 290 -2 3 1486 581 61 12 0 chr4 118179062 118179144 -37450976 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1486 280 325 61 61 chr4 118179273 118179404 -37450716 + B1_Mus1 SINE Alu 11 141 -7 3 1486 219 343 17 61 chr4 118179483 118179539 -37450581 + B4 SINE B4 36 86 -206 3 1486 523 231 19 0 chr4 118179539 118179647 -37450473 + B1F SINE Alu 2 111 -38 3 1486 1736 103 12 123 chr4 118179864 118180206 -37449914 + ORR1A1 LTR MaLR 1 304 -42 3 1486 661 55 22 0 chr4 118180205 118180296 -37449824 + B1_Mm SINE Alu 55 147 0 3 1486 231 33 0 0 chr4 118180296 118180311 -37449809 + (A)n Simple_repeat Simple_repeat 1 15 0 3 1486 1166 48 0 0 chr4 118180311 118180458 -37449662 + B1_Mm SINE Alu 1 147 0 3 1486 231 33 0 0 chr4 118180458 118180472 -37449648 + (A)n Simple_repeat Simple_repeat 1 14 0 3 1486 423 20 0 0 chr4 118180477 118180528 -37449592 + ORR1A1 LTR MaLR 296 346 0 3 1486 414 127 0 27 chr4 118180528 118180601 -37449519 - RMER1B Other Other -639 427 357 3 1486 430 208 106 78 chr4 118180617 118180758 -37449362 - RMER1A Other Other -796 234 90 3 1486 346 280 216 31 chr4 118181271 118181433 -37448687 - B3A SINE B2 -4 194 3 3 1486 1135 75 0 0 chr4 118182133 118182280 -37447840 + B1_Mus2 SINE Alu 1 147 0 3 1486 225 0 0 0 chr4 118182398 118182423 -37447697 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1486 206 269 0 0 chr4 118182508 118182560 -37447560 + G-rich Low_complexity Low_complexity 1 52 0 3 1486 697 127 50 17 chr4 118182683 118182803 -37447317 - B1_Mus2 SINE Alu -23 124 1 3 1486 1489 57 0 5 chr4 118182830 118183025 -37447095 + B2_Mm2 SINE B2 2 195 0 3 1486 780 173 0 3 chr4 118183421 118183707 -37446413 + (TG)n Simple_repeat Simple_repeat 1 284 0 3 1486 282 287 46 0 chr4 118184064 118184151 -37445969 - PB1D7 SINE Alu -6 114 24 3 1486 901 221 5 36 chr4 118184481 118184702 -37445418 + B3 SINE B2 1 214 -2 3 1486 989 224 24 0 chr4 118184720 118184925 -37445195 + B3 SINE B2 5 214 -2 3 1486 654 134 18 0 chr4 118185326 118185438 -37444682 + B1_Mur4 SINE Alu 22 135 -15 3 1486 441 0 0 0 chr4 118185472 118185521 -37444599 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1486 423 0 0 0 chr4 118185875 118185922 -37444198 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1486 450 49 0 0 chr4 118185922 118185982 -37444138 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1486 1413 51 0 0 chr4 118186624 118186802 -37443318 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 3 1486 1130 74 0 0 chr4 118186819 118186967 -37443153 - B1_Mus1 SINE Alu 0 148 1 3 1486 282 267 40 0 chr4 118187480 118187555 -37442565 + MTEb LTR MaLR 301 378 -1 3 1486 263 280 112 0 chr4 118187924 118188031 -37442089 - PB1D7 SINE Alu 0 120 2 3 1486 1078 76 0 7 chr4 118188350 118188495 -37441625 - B1_Mus1 SINE Alu 0 148 5 3 1486 1294 94 16 0 chr4 118188507 118188698 -37441422 - B2_Mm2 SINE B2 0 195 2 3 1486 21 0 0 0 chr4 118188706 118188727 -37441393 + AT_rich Low_complexity Low_complexity 1 21 0 3 1486 591 241 38 0 chr4 118188961 118189094 -37441026 + ID_B1 SINE B4 87 224 0 3 1486 180 270 76 63 chr4 118189394 118189473 -37440647 + MIR3 SINE MIR 2 81 -127 3 1486 187 341 68 0 chr4 118189560 118189692 -37440428 + L2 LINE L2 875 1015 -2404 3 1486 1018 249 41 69 chr4 118189937 118190326 -37439794 + MTEa LTR MaLR 2 379 0 3 1486 290 318 162 78 chr4 118190349 118191630 -37438490 + L2 LINE L2 1388 2775 -644 3 1486 624 265 70 35 chr4 118191837 118192181 -37437939 + ORR1E LTR MaLR 2 357 -2 3 1486 637 279 14 0 chr4 118192204 118192351 -37437769 + RSINE1 SINE B4 3 151 -14 3 1486 849 171 0 0 chr4 118192351 118192521 -37437599 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1486 1065 69 14 20 chr4 118192583 118192731 -37437389 + B1_Mus2 SINE Alu 1 147 0 3 1486 231 61 0 0 chr4 118192736 118192769 -37437351 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1486 1931 273 56 23 chr4 118192794 118193026 -37437094 + ORR1E-int LTR MaLR 2 235 -1345 3 1486 2964 134 29 4 chr4 118193026 118193513 -37436607 - RLTR19 LTR ERVK 0 499 1 3 1486 1931 273 56 23 chr4 118193513 118193849 -37436271 + ORR1E-int LTR MaLR 236 589 -991 3 1486 709 169 22 58 chr4 118193852 118193990 -37436130 + B1_Mur2 SINE Alu 2 134 -15 3 1486 195 146 0 0 chr4 118193996 118194037 -37436083 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1486 3027 46 31 0 chr4 118194044 118194432 -37435688 + MTB LTR MaLR 1 400 0 3 1486 1886 307 95 29 chr4 118195271 118196029 -37434091 + ORR1E-int LTR MaLR 744 1551 -29 3 1486 702 299 96 39 chr4 118196010 118196344 -37433776 + ORR1E LTR MaLR 6 358 -1 3 1486 849 193 50 30 chr4 118196449 118196647 -37433473 - B3 SINE B2 0 216 15 3 1486 356 262 42 1 chr4 118196943 118197055 -37433065 + MIR SINE MIR 109 230 -38 3 1486 761 147 85 0 chr4 118197060 118197189 -37432931 + B1_Mur1 SINE Alu 9 148 -1 3 1486 225 182 18 18 chr4 118197553 118197609 -37432511 + L2a LINE L2 3371 3426 0 3 1486 21 57 0 0 chr4 118197848 118197883 -37432237 + AT_rich Low_complexity Low_complexity 1 35 0 3 1486 192 77 0 0 chr4 118198479 118198505 -37431615 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 3 1486 277 322 40 0 chr4 118198514 118198628 -37431492 + B1_Mus1 SINE Alu 1 120 0 3 1486 505 214 18 9 chr4 118202951 118203064 -37427056 + RSINE1 SINE B4 12 125 -40 3 1486 236 77 26 0 chr4 118203064 118203103 -37427017 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 3 1486 1266 77 71 6 chr4 118203103 118203285 -37426835 - B2_Mm2 SINE B2 0 195 2 3 1486 655 347 51 20 chr4 118203541 118203727 -37426393 + MER2B DNA MER2_type 1 185 -151 3 1486 938 181 59 25 chr4 118203727 118203931 -37426189 + B3 SINE B2 1 211 -5 3 1486 655 347 51 20 chr4 118203931 118204038 -37426082 + MER2B DNA MER2_type 186 303 -33 3 1486 195 162 0 0 chr4 118204208 118204245 -37425875 + A-rich Low_complexity Low_complexity 1 37 0 4 1486 394 306 67 7 chr4 118204248 118204383 -37425737 + RSINE1 SINE B4 2 144 -21 4 1486 285 29 0 0 chr4 118206056 118206090 -37424030 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1486 1197 34 0 0 chr4 118206090 118206237 -37423883 - B1_Mus2 SINE Alu 0 147 1 4 1486 875 258 47 47 chr4 118206841 118207097 -37423023 + B4 SINE B4 3 258 -34 4 1486 522 83 0 0 chr4 118207134 118207206 -37422914 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1486 405 248 104 7 chr4 118207225 118207379 -37422741 + MIR SINE MIR 51 219 -43 4 1486 3450 139 49 10 chr4 118207891 118208501 -37421619 + RLTR26 LTR ERVK 1 634 -8 4 1486 243 0 0 0 chr4 118208503 118208530 -37421590 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 1486 565 194 0 0 chr4 118208531 118208629 -37421491 - B1_Mur1 SINE Alu -12 137 40 4 1486 197 390 55 6 chr4 118209749 118209914 -37420206 + L2 LINE L2 2677 2849 -570 4 1486 365 324 233 17 chr4 118209917 118210153 -37419967 + B4A SINE B4 1 287 -5 4 1486 381 43 0 0 chr4 118211279 118211326 -37418794 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1486 241 319 33 11 chr4 118217454 118217546 -37412574 + L2b LINE L2 3275 3368 -7 4 1486 207 0 0 0 chr4 118217911 118217934 -37412186 + (CAG)n Simple_repeat Simple_repeat 1 23 0 4 1486 1103 50 0 0 chr4 118218250 118218389 -37411731 + B1_Mus1 SINE Alu 1 139 -9 4 1486 665 340 27 47 chr4 118218389 118218420 -37411700 - Lx6 LINE L1 -89 6961 6930 4 1486 204 40 0 0 chr4 118218420 118218445 -37411675 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1486 1163 254 12 5 chr4 118218445 118218710 -37411410 - Lx6 LINE L1 -149 7311 7054 4 1486 345 301 78 39 chr4 118218859 118218929 -37411191 - MER33 DNA MER1_type -137 187 111 4 1486 1567 31 5 0 chr4 118218929 118219121 -37410999 - B2_Mm1t SINE B2 0 193 1 4 1486 345 299 51 50 chr4 118219121 118219262 -37410858 - MER33 DNA MER1_type -84 125 1 4 1486 284 329 0 33 chr4 118219711 118219862 -37410258 + G-rich Low_complexity Low_complexity 1 146 0 4 1486 383 313 0 43 chr4 118219881 118220068 -37410052 + G-rich Low_complexity Low_complexity 2 180 0 4 1486 379 326 0 40 chr4 118220195 118220645 -37409475 + G-rich Low_complexity Low_complexity 1 432 0 4 1486 321 339 0 33 chr4 118220677 118220860 -37409260 + G-rich Low_complexity Low_complexity 3 179 0 4 1486 408 307 0 43 chr4 118220896 118221083 -37409037 + G-rich Low_complexity Low_complexity 2 180 0 4 1486 378 318 0 43 chr4 118221116 118221303 -37408817 + G-rich Low_complexity Low_complexity 2 180 0 4 1486 325 231 60 97 chr4 118221672 118221806 -37408314 - RMER15 LTR ERVL -104 471 343 4 1486 2349 128 30 5 chr4 118221828 118222196 -37407924 + RLTR14 LTR ERV1 3 379 -3 4 1486 1562 21 5 16 chr4 118222381 118222575 -37407545 - B2_Mm1a SINE B2 -1 192 1 4 1486 334 271 271 17 chr4 118222647 118222883 -37407237 + L2a LINE L2 3131 3426 0 4 1486 1692 195 73 11 chr4 118222955 118223323 -37406797 - MTD LTR MaLR -11 408 18 4 1486 222 278 41 14 chr4 118223339 118223412 -37406708 + MIRb SINE MIR 130 204 -64 4 1486 484 193 0 0 chr4 118223743 118223826 -37406294 + B3A SINE B2 7 89 -109 4 1486 258 304 112 9 chr4 118223826 118223859 -37406261 + B4 SINE B4 7 134 -158 4 1486 416 261 0 21 chr4 118224327 118224421 -37405699 + B3A SINE B2 81 172 -26 4 1486 369 0 0 0 chr4 118226354 118226395 -37403725 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1487 299 135 55 71 chr4 118228353 118228536 -37401584 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 4 1487 224 130 58 58 chr4 118228480 118228651 -37401469 + (TCTG)n Simple_repeat Simple_repeat 2 172 0 4 1487 321 136 57 62 chr4 118228624 118229352 -37400768 + (GCTG)n Simple_repeat Simple_repeat 1 723 0 4 1487 251 129 58 58 chr4 118229120 118229471 -37400649 + (TCTG)n Simple_repeat Simple_repeat 1 351 0 4 1487 339 129 48 90 chr4 118229408 118229663 -37400457 + (GCTG)n Simple_repeat Simple_repeat 1 244 0 4 1487 1095 102 62 0 chr4 118230402 118230578 -37399542 - B2_Mm2 SINE B2 -7 188 2 4 1487 774 94 25 8 chr4 118231461 118231579 -37398541 + PB1D9 SINE Alu 1 120 0 4 1487 228 127 18 35 chr4 118231674 118231731 -37398389 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1487 581 142 47 12 chr4 118231778 118231949 -37398171 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 1487 387 0 0 0 chr4 118232330 118232373 -37397747 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1487 356 298 71 66 chr4 118232479 118232662 -37397458 - B4A SINE B4 0 292 109 4 1487 834 142 37 7 chr4 118232721 118232856 -37397264 - B1_Mur2 SINE Alu -10 139 1 4 1487 313 290 70 0 chr4 118233547 118233647 -37396473 + L4 LINE RTE 1654 1760 -269 4 1487 397 207 48 13 chr4 118233657 118233757 -37396363 - PB1D7 SINE Alu -25 124 28 4 1487 180 192 39 0 chr4 118233761 118233813 -37396307 + L4 LINE RTE 1767 1820 -209 4 1487 297 0 0 0 chr4 118233953 118233986 -37396134 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1487 306 0 0 0 chr4 118233986 118234019 -37396101 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1487 748 245 74 10 chr4 118234019 118234221 -37395899 + MER46C DNA MER2_type 124 338 0 4 1487 403 189 14 0 chr4 118234820 118234894 -37395226 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 4 1487 398 206 11 21 chr4 118234911 118235005 -37395115 - MIR SINE MIR -122 140 48 4 1487 1588 183 108 6 chr4 118235241 118235336 -37394784 + MTB_Mm LTR MaLR 3 131 -276 4 1487 1352 73 21 0 chr4 118235336 118235527 -37394593 + B2_Mm2 SINE B2 1 195 0 4 1487 1588 183 108 6 chr4 118235527 118235766 -37394354 + MTB_Mm LTR MaLR 132 370 -37 4 1487 1218 222 41 17 chr4 118235783 118236076 -37394044 + Lx6 LINE L1 7161 7460 0 4 1487 738 255 159 4 chr4 118236504 118236756 -37393364 - B4A SINE B4 0 292 2 4 1487 1049 201 9 53 chr4 118237880 118238106 -37392014 - B3 SINE B2 0 216 1 4 1487 195 42 0 0 chr4 118239328 118239352 -37390768 + (TTC)n Simple_repeat Simple_repeat 2 25 0 4 1487 827 56 0 0 chr4 118240691 118240798 -37389322 - B2_Mm2 SINE B2 -88 107 1 4 1487 628 203 45 8 chr4 118243320 118243454 -37386666 + B1F1 SINE Alu 3 141 -8 4 1487 684 246 13 70 chr4 118243461 118243688 -37386432 + B4A SINE B4 1 214 -78 4 1487 336 102 0 0 chr4 118243737 118243786 -37386334 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1487 548 29 0 14 chr4 118243976 118244047 -37386073 + (TCCC)n Simple_repeat Simple_repeat 2 71 0 4 1487 700 248 50 15 chr4 118245544 118245745 -37384375 + B3 SINE B2 1 208 -8 4 1487 510 263 109 49 chr4 118246644 118246828 -37383292 + MER20 DNA MER1_type 25 219 0 4 1487 258 328 30 74 chr4 118247310 118247344 -37382776 + MLT1A1 LTR MaLR 238 270 -120 4 1487 369 0 0 0 chr4 118247344 118247385 -37382735 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1487 280 254 62 3 chr4 118247385 118247502 -37382618 + MLT1A1 LTR MaLR 255 384 -24 4 1487 425 294 209 15 chr4 118247785 118248092 -37382028 - L2b LINE L2 -223 3203 2843 4 1487 511 281 27 14 chr4 118248149 118248297 -37381823 + RSINE1 SINE B4 1 150 -15 4 1487 396 334 51 56 chr4 118249693 118249974 -37380146 + MLT1G LTR MaLR 215 518 -73 4 1487 880 94 116 55 chr4 118249974 118250155 -37379965 + B2_Mm2 SINE B2 2 193 -2 4 1487 396 335 66 80 chr4 118250155 118250205 -37379915 + MLT1G LTR MaLR 519 565 -26 4 1487 227 292 116 58 chr4 118250439 118250565 -37379555 - L2 LINE L2 -459 2960 2826 4 1487 2109 140 31 89 chr4 118250565 118251012 -37379108 + MTC LTR MaLR 1 421 0 4 1487 227 292 116 58 chr4 118251012 118251023 -37379097 - L2 LINE L2 -594 2825 2815 4 1487 425 216 21 0 chr4 118252440 118252537 -37377583 - PB1D10 SINE Alu -12 105 7 4 1487 1139 100 137 0 chr4 118252651 118252841 -37377279 - URR1A DNA MER1_type -5 221 6 4 1487 416 223 28 37 chr4 118253361 118253468 -37376652 + B1F1 SINE Alu 6 111 -38 4 1487 769 144 50 7 chr4 118253982 118254122 -37375998 - B1_Mus1 SINE Alu -1 147 2 4 1487 290 298 78 31 chr4 118254149 118254277 -37375843 + L2b LINE L2 3210 3343 -32 4 1487 360 293 59 15 chr4 118254826 118254961 -37375159 - MIRc SINE MIR -96 172 32 4 1487 1203 120 15 40 chr4 118254994 118255194 -37374926 + B2_Mm2 SINE B2 1 195 0 4 1487 193 150 0 24 chr4 118255640 118255681 -37374439 - MIR SINE MIR -10 252 213 4 1487 1125 55 14 0 chr4 118255784 118255929 -37374191 + B1_Mm SINE Alu 1 147 0 4 1487 225 0 0 0 chr4 118255929 118255954 -37374166 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1487 1368 67 0 0 chr4 118256005 118256185 -37373935 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1487 451 299 6 62 chr4 118256201 118256246 -37373874 + ID_B1 SINE B4 50 217 -7 4 1487 790 165 8 0 chr4 118256246 118256379 -37373741 + B1_Mur4 SINE Alu 10 143 -7 4 1487 189 94 0 0 chr4 118256396 118256428 -37373692 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1487 248 326 55 126 chr4 118257655 118257981 -37372139 + L2a LINE L2 3100 3402 -24 4 1487 236 120 0 20 chr4 118259881 118259932 -37370188 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1487 489 225 36 0 chr4 118260749 118260860 -37369260 - PB1D7 SINE Alu -1 119 5 4 1487 288 53 0 0 chr4 118260898 118260936 -37369184 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1487 719 294 50 5 chr4 118260940 118261142 -37368978 - B4A SINE B4 -26 266 56 4 1487 543 31 0 0 chr4 118262367 118262432 -37367688 + (CTG)n Simple_repeat Simple_repeat 3 67 0 4 1487 240 127 16 52 chr4 118262605 118262666 -37367454 - B3 SINE B2 -145 53 1 4 1487 1500 178 147 3 chr4 118263031 118263358 -37366762 + ORR1D1 LTR MaLR 1 374 0 4 1487 207 0 0 0 chr4 118263551 118263574 -37366546 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1487 1128 82 0 0 chr4 118263574 118263721 -37366399 - B1_Mus2 SINE Alu 0 147 1 4 1487 487 264 89 8 chr4 118264365 118264527 -37365593 - L1MB3 LINE L1 -261 5903 5732 4 1487 1385 70 5 0 chr4 118264536 118264721 -37365399 - B2_Mm1a SINE B2 -6 187 2 4 1487 1865 148 69 9 chr4 118264899 118265233 -37364887 + ORR1B1 LTR MaLR 41 394 0 4 1487 438 125 54 0 chr4 118265940 118266052 -37364068 + CT-rich Low_complexity Low_complexity 1 118 0 4 1487 249 258 16 16 chr4 118266083 118266146 -37363974 - ID4_ SINE ID -5 78 16 4 1487 612 187 114 0 chr4 118266202 118266325 -37363795 - B1_Mur4 SINE Alu -9 141 5 4 1487 399 89 0 0 chr4 118266349 118266405 -37363715 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1487 319 262 104 90 chr4 118266470 118266604 -37363516 - B4A SINE B4 -128 164 29 5 1487 2006 153 34 14 chr4 118266734 118267091 -37363029 + ORR1B2 LTR MaLR 1 364 -3 5 1487 182 319 85 17 chr4 118267094 118267212 -37362908 - MIR SINE MIR -43 219 94 5 1487 23 33 0 0 chr4 118267886 118267916 -37362204 + AT_rich Low_complexity Low_complexity 1 30 0 5 1487 409 306 47 7 chr4 118267936 118268084 -37362036 - RSINE1 SINE B4 -9 156 3 5 1487 324 0 0 0 chr4 118268098 118268134 -37361986 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1487 463 271 78 7 chr4 118268855 118268996 -37361124 - B4 SINE B4 -137 155 5 5 1487 1623 26 0 0 chr4 118269055 118269247 -37360873 - B2_Mm1t SINE B2 0 193 2 5 1487 239 234 47 55 chr4 118269251 118269361 -37360759 - B3A SINE B2 0 198 87 5 1487 880 239 5 61 chr4 118269378 118269462 -37360658 + B4 SINE B4 2 80 -212 5 1487 321 47 0 0 chr4 118269462 118269505 -37360615 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 5 1487 335 367 0 52 chr4 118269515 118269650 -37360470 + B1_Mm SINE Alu 1 128 -19 5 1487 311 267 69 10 chr4 118269686 118269788 -37360332 + L1M4b LINE L1 105 212 -7122 5 1487 709 169 0 23 chr4 118269881 118270014 -37360106 + B1_Mur1 SINE Alu 12 141 -8 5 1487 590 302 72 32 chr4 118270374 118270737 -37359383 - L1MD LINE L1 -2262 3884 3502 5 1487 281 238 46 35 chr4 118270729 118270816 -37359304 - L1MC4 LINE L1 -1427 6615 6528 5 1487 962 133 200 0 chr4 118272101 118272281 -37357839 + B3 SINE B2 1 216 0 5 1487 228 350 0 0 chr4 118273086 118273146 -37356974 + MIRm SINE MIR 199 258 -18 5 1487 796 281 52 52 chr4 118273652 118273960 -37356160 + Lx9 LINE L1 6860 7167 -477 5 1487 477 0 0 0 chr4 118274076 118274129 -37355991 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 5 1487 875 207 62 33 chr4 118274135 118274283 -37355837 + B3 SINE B2 1 155 -61 5 1487 405 0 0 0 chr4 118274283 118274328 -37355792 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1487 875 207 62 33 chr4 118274328 118274389 -37355731 + B3 SINE B2 156 216 0 5 1487 288 281 26 26 chr4 118274472 118274589 -37355531 - L1M5 LINE L1 -374 5750 5634 5 1487 948 31 133 0 chr4 118274625 118274753 -37355367 - B1_Mus2 SINE Alu 0 147 3 5 1487 554 264 93 24 chr4 118275288 118275538 -37354582 + MTEa LTR MaLR 86 379 0 5 1487 2622 60 0 0 chr4 118275713 118276045 -37354075 + IAPEY3_LTR LTR ERVK 1 332 0 5 1487 833 296 48 43 chr4 118276046 118276487 -37353633 + L1MB7 LINE L1 2236 2678 -3468 5 1487 251 295 77 77 chr4 118276490 118276633 -37353487 + L1MB7 LINE L1 4813 4955 -1191 5 1487 1916 128 46 14 chr4 118276643 118276991 -37353129 - ORR1B2 LTR MaLR -8 359 1 5 1487 1829 283 77 51 chr4 118276995 118277619 -37352501 + L1MB7 LINE L1 4965 5616 -568 5 1487 1986 152 73 6 chr4 118277619 118277963 -37352157 + ORR1B2 LTR MaLR 1 367 0 5 1487 1885 267 90 42 chr4 118277963 118278428 -37351692 + L1MB7 LINE L1 5617 6098 -86 5 1487 415 205 365 0 chr4 118278453 118278609 -37351511 + ID_B1 SINE B4 2 214 -10 5 1487 987 99 195 47 chr4 118279863 118280053 -37350067 + URR1A DNA MER1_type 5 222 -4 5 1487 214 296 41 27 chr4 118280572 118280645 -37349475 + L2b LINE L2 3300 3373 -2 5 1487 259 186 27 41 chr4 118280672 118280745 -37349375 + CT-rich Low_complexity Low_complexity 3 74 0 5 1487 684 273 28 45 chr4 118280798 118281089 -37349031 - B4A SINE B4 -6 286 1 5 1487 375 78 0 0 chr4 118283449 118283500 -37346620 + (AGGGGG)n Simple_repeat Simple_repeat 6 56 0 5 1487 577 189 9 26 chr4 118283512 118283626 -37346494 + B1_Mur2 SINE Alu 25 136 -13 5 1487 211 225 145 38 chr4 118283770 118283883 -37346237 - MIR SINE MIR -76 132 4 5 1487 330 309 24 29 chr4 118284546 118284715 -37345405 + MIRc SINE MIR 8 181 -95 5 1487 685 259 70 15 chr4 118285247 118285441 -37344679 - B3 SINE B2 -31 185 1 5 1487 370 154 30 30 chr4 118286014 118286081 -37344039 - PB1D10 SINE Alu -30 87 21 5 1487 226 333 95 7 chr4 118286221 118286369 -37343751 + L2c LINE L2 3216 3376 -11 5 1487 458 250 0 9 chr4 118286749 118286858 -37343262 + PB1D10 SINE Alu 2 109 -8 5 1487 340 310 30 63 chr4 118287013 118287239 -37342881 + MIRb SINE MIR 19 242 -26 5 1487 607 202 28 92 chr4 118288350 118288537 -37341583 + B3A SINE B2 26 198 0 5 1487 1256 47 0 0 chr4 118288560 118288708 -37341412 + B1_Mus1 SINE Alu 1 148 0 5 1487 533 254 92 21 chr4 118288736 118288877 -37341243 + RSINE1 SINE B4 3 153 -12 5 1487 306 0 0 0 chr4 118288884 118288918 -37341202 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1487 382 192 27 0 chr4 118289842 118289915 -37340205 + B3 SINE B2 1 75 -141 5 1487 1009 222 35 0 chr4 118289995 118290193 -37339927 + B3 SINE B2 2 206 -10 5 1487 206 105 26 0 chr4 118290195 118290233 -37339887 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 5 1487 311 280 119 10 chr4 118290236 118290337 -37339783 + L1MEc LINE L1 1834 1945 -5051 5 1487 396 0 0 0 chr4 118290350 118290394 -37339726 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1487 331 214 150 25 chr4 118290511 118290676 -37339444 + L1MEc LINE L1 2274 2471 -4616 5 1487 270 324 155 26 chr4 118290785 118291172 -37338948 + L1MEc LINE L1 4750 5186 -1820 5 1487 506 293 136 108 chr4 118291187 118291466 -37338654 - B4 SINE B4 -1 291 5 5 1487 1131 55 0 46 chr4 118291547 118291700 -37338420 - B1_Mm SINE Alu 0 147 2 5 1487 342 354 4 137 chr4 118291701 118291796 -37338324 + L1MEc LINE L1 6012 6081 -925 5 1487 810 153 80 0 chr4 118291796 118291933 -37338187 - B1_Mus1 SINE Alu 0 148 1 5 1487 342 354 4 137 chr4 118291933 118292088 -37338032 + L1MEc LINE L1 6082 6227 -779 5 1487 1091 132 60 0 chr4 118292088 118292270 -37337850 + B2_Mm2 SINE B2 1 193 -2 5 1487 1254 48 0 0 chr4 118292274 118292420 -37337700 + B1_Mus1 SINE Alu 3 148 0 5 1487 342 354 4 137 chr4 118292420 118292441 -37337679 + L1MEc LINE L1 6228 6247 -759 5 1487 290 302 109 41 chr4 118292458 118292724 -37337396 + Kanga2_a DNA Tc2 491 774 -114 5 1487 306 110 0 52 chr4 118293090 118293167 -37336953 + (CCCCG)n Simple_repeat Simple_repeat 2 74 0 5 1487 219 36 0 0 chr4 118295555 118295583 -37334537 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1487 217 68 22 22 chr4 118296447 118296492 -37333628 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 5 1487 1275 41 0 0 chr4 118296492 118296639 -37333481 - B1_Mus1 SINE Alu 0 148 2 5 1487 22 0 0 0 chr4 118298551 118298573 -37331547 + AT_rich Low_complexity Low_complexity 1 22 0 5 1487 849 133 14 14 chr4 118298660 118298805 -37331315 + B1_Mur4 SINE Alu 5 149 -1 5 1487 758 130 7 44 chr4 118299357 118299494 -37330626 - B1_Mur4 SINE Alu -6 144 13 5 1487 254 273 51 130 chr4 118299396 118299573 -37330547 - MT2B2 LTR ERVL -327 257 95 5 1487 387 161 126 2 chr4 118299693 118299801 -37330319 - PB1D7 SINE Alu 0 120 3 5 1487 1712 118 76 13 chr4 118300119 118300421 -37329699 + ORR1A4 LTR MaLR 1 321 -8 5 1487 250 273 89 22 chr4 118300425 118300515 -37329605 - MLT1A1 LTR MaLR -9 399 304 5 1487 783 306 184 16 chr4 118301497 118301938 -37328182 + Tigger6a DNA MER2_type 227 741 -342 5 1487 721 217 32 26 chr4 118301941 118302097 -37328023 + RSINE1 SINE B4 3 159 -6 5 1487 211 246 95 32 chr4 118302120 118302183 -37327937 + ID4 SINE ID 16 82 -1 5 1487 788 172 160 0 chr4 118302423 118302592 -37327528 + B3 SINE B2 2 197 -19 5 1487 924 239 119 74 chr4 118303233 118303260 -37326860 - MTE2b LTR MaLR -7 372 351 5 1487 186 71 0 0 chr4 118303260 118303288 -37326832 + (CGAAA)n Simple_repeat Simple_repeat 3 30 0 5 1487 924 239 119 74 chr4 118303288 118303572 -37326548 - MTE2b LTR MaLR -29 350 47 5 1487 1156 82 106 0 chr4 118303959 118304129 -37325991 - B2_Mm2 SINE B2 -7 188 1 5 1487 1686 144 125 9 chr4 118304250 118304579 -37325541 + ORR1B2 LTR MaLR 1 367 0 5 1487 226 340 85 0 chr4 118305636 118305730 -37324390 + MER31B LTR ERV1 3 104 -362 5 1487 1096 261 31 48 chr4 118305807 118306101 -37324019 + B4 SINE B4 1 289 -3 5 1487 312 204 183 61 chr4 118306141 118306256 -37323864 - MER3 DNA MER1_type -78 131 3 5 1487 280 182 0 18 chr4 118306451 118306507 -37323613 - MER3 DNA MER1_type -153 56 2 5 1487 21 0 0 0 chr4 118306791 118306812 -37323308 + AT_rich Low_complexity Low_complexity 1 21 0 5 1487 803 258 77 0 chr4 118306903 118307097 -37323023 + B3 SINE B2 2 210 -6 5 1487 340 299 118 34 chr4 118307421 118307625 -37322495 - L1M5 LINE L1 -1333 4813 4593 5 1487 570 262 0 31 chr4 118307634 118307764 -37322356 + ID_B1 SINE B4 84 209 -15 5 1487 774 136 314 0 chr4 118308178 118308347 -37321773 - URR1A DNA MER1_type -3 223 2 5 1487 292 259 133 9 chr4 118309294 118309407 -37320713 + MTD LTR MaLR 18 144 -275 5 1487 501 130 0 13 chr4 118309416 118309494 -37320626 - MTB_Mm LTR MaLR -330 77 1 5 1487 799 169 16 65 chr4 118309494 118309741 -37320379 - ORR1D1 LTR MaLR -11 367 1 5 1487 892 203 99 0 chr4 118309778 118309970 -37320150 + B3 SINE B2 1 211 -5 5 1487 423 280 152 22 chr4 118310088 118310196 -37319924 + L1M5 LINE L1 3891 3996 -2150 5 1487 180 0 0 0 chr4 118310196 118310216 -37319904 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1487 423 280 152 22 chr4 118310216 118310377 -37319743 + L1M5 LINE L1 3997 4194 -1952 5 1487 242 316 88 39 chr4 118310658 118310760 -37319360 + MTE2b LTR MaLR 1 107 -252 5 1487 271 202 168 35 chr4 118310789 118310902 -37319218 + MTE2b LTR MaLR 212 339 -40 5 1487 351 0 0 0 chr4 118311478 118311517 -37318603 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1487 525 208 64 40 chr4 118311767 118311892 -37318228 + RLTR23 LTR ERV1 3 130 -300 5 1487 699 232 50 92 chr4 118311933 118312151 -37317969 + RLTR23 LTR ERV1 222 430 0 5 1487 1812 270 33 15 chr4 118312151 118312697 -37317423 - L1_Mur3 LINE L1 -5 5875 5320 5 1487 1027 69 0 0 chr4 118312726 118312857 -37317263 - B1_Mus1 SINE Alu 0 148 18 5 1487 464 202 33 99 chr4 118312761 118312882 -37317238 - MT2B LTR ERVL -337 264 152 5 1487 3779 119 111 33 chr4 118312927 118313218 -37316902 - RMER6A LTR ERVK 0 756 450 5 1487 2373 110 3 3 chr4 118313218 118313545 -37316575 + ORR1A2 LTR MaLR 1 327 0 5 1487 3779 119 111 33 chr4 118313545 118313954 -37316166 - RMER6A LTR ERVK -307 449 1 5 1487 346 268 0 12 chr4 118314290 118314373 -37315747 - ID_B1 SINE B4 -7 217 136 6 1487 492 238 19 87 chr4 118314470 118314700 -37315420 - HAL1-2a_MD LINE L1 -517 2507 2344 6 1487 296 179 0 13 chr4 118316041 118316120 -37314000 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1487 561 188 103 10 chr4 118316121 118316218 -37313902 - B1_Mur2 SINE Alu -40 109 4 6 1487 226 245 19 0 chr4 118316571 118316624 -37313496 + B4A SINE B4 92 145 -147 6 1487 3634 91 58 6 chr4 118317127 118317527 -37312593 + Lx2 LINE L1 6453 6866 -131 6 1487 180 0 0 0 chr4 118317527 118317547 -37312573 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 6 1487 3634 91 58 6 chr4 118317547 118317663 -37312457 + Lx2 LINE L1 6867 6995 -2 6 1487 775 213 125 5 chr4 118317958 118318142 -37311978 - B3 SINE B2 -10 206 1 6 1487 339 25 0 0 chr4 118318403 118318443 -37311677 + (TTA)n Simple_repeat Simple_repeat 2 41 0 6 1487 1087 39 0 0 chr4 118318443 118318573 -37311547 - B1_Mm SINE Alu -12 135 6 6 1487 735 207 21 14 chr4 118318690 118318832 -37311288 - B1_Mur1 SINE Alu 0 149 7 6 1487 644 236 89 18 chr4 118319038 118319206 -37310914 - B3A SINE B2 -18 180 1 6 1487 3209 206 82 30 chr4 118319404 118320209 -37309911 - RMER13A LTR ERVK -12 848 2 6 1487 294 29 0 0 chr4 118320209 118320244 -37309876 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 6 1487 1102 269 26 8 chr4 118320281 118320547 -37309573 - Lx5 LINE L1 0 7050 6780 6 1487 695 177 27 41 chr4 118320551 118320698 -37309422 - B1_Mur1 SINE Alu -3 146 2 6 1487 279 0 0 0 chr4 118321069 118321100 -37309020 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1487 953 203 69 25 chr4 118321202 118321404 -37308716 - B3 SINE B2 0 216 6 6 1487 231 114 0 0 chr4 118321647 118321682 -37308438 + (TATG)n Simple_repeat Simple_repeat 4 38 0 6 1487 602 60 0 12 chr4 118321892 118321976 -37308144 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 6 1487 364 85 346 10 chr4 118321976 118322080 -37308040 - B2_Mm2 SINE B2 -10 185 47 6 1487 1283 74 11 44 chr4 118322112 118322295 -37307825 - B2_Mm1t SINE B2 -14 179 3 6 1487 1362 172 103 122 chr4 118322310 118322607 -37307513 - Lx5 LINE L1 0 7050 6732 6 1487 624 14 0 0 chr4 118322607 118322680 -37307440 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1487 1362 172 103 122 chr4 118322680 118322752 -37307368 - Lx5 LINE L1 -319 6731 6688 6 1487 1946 286 69 35 chr4 118322950 118323839 -37306281 - L1MA6 LINE L1 -18 6282 5373 6 1487 4160 85 31 28 chr4 118323839 118324421 -37305699 + MT2B2 LTR ERVL 1 584 0 6 1487 1946 286 69 35 chr4 118324421 118324505 -37305615 - L1MA6 LINE L1 -928 5372 5276 6 1487 286 221 0 42 chr4 118324655 118324726 -37305394 - L1M2 LINE L1 -958 5182 5115 6 1487 599 277 24 30 chr4 118324756 118324920 -37305200 - RSINE1 SINE B4 0 165 3 6 1487 510 321 106 37 chr4 118324921 118325299 -37304821 - L1M2 LINE L1 -1005 5138 4735 6 1487 212 167 21 0 chr4 118325305 118325353 -37304767 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1487 658 269 118 20 chr4 118325377 118325631 -37304489 - B4A SINE B4 -11 281 3 6 1487 343 297 0 0 chr4 118325662 118325753 -37304367 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1487 995 230 85 27 chr4 118325753 118326012 -37304108 - B4A SINE B4 0 292 19 6 1487 1967 262 103 71 chr4 118326031 118326125 -37303995 - L1M2 LINE L1 -1406 4737 4663 6 1487 1242 41 0 7 chr4 118326125 118326273 -37303847 - B1_Mus1 SINE Alu -1 147 1 6 1487 1967 262 103 71 chr4 118326273 118326516 -37303604 - L1M2 LINE L1 -1481 4662 4411 6 1487 198 0 0 0 chr4 118326516 118326538 -37303582 + (TATG)n Simple_repeat Simple_repeat 4 25 0 6 1487 4457 16 0 2 chr4 118326538 118327031 -37303089 - MT2_Mm LTR ERVL -1 492 1 6 1487 1967 262 103 71 chr4 118327031 118327798 -37302322 - L1M2 LINE L1 -1733 4410 3597 6 1487 218 105 0 26 chr4 118327811 118327850 -37302270 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1487 236 288 57 57 chr4 118327856 118327926 -37302194 - RSINE1 SINE B4 -14 151 82 6 1487 221 345 57 98 chr4 118327929 118328051 -37302069 - PB1 SINE Alu -8 119 3 6 1487 379 300 82 41 chr4 118328051 118328114 -37302006 - B4A SINE B4 -218 74 6 6 1487 912 117 13 46 chr4 118328147 118328299 -37301821 + B1_Mus2 SINE Alu 1 147 0 6 1487 220 98 57 38 chr4 118328299 118328371 -37301749 + (CAAA)n Simple_repeat Simple_repeat 1 73 0 6 1487 759 263 97 50 chr4 118328386 118328883 -37301237 - L1M2 LINE L1 -2558 3585 3066 6 1487 3557 221 140 55 chr4 118328943 118330190 -37299930 + RMER1A Other Other 8 1026 -4 6 1487 386 264 97 0 chr4 118330180 118330324 -37299796 - L1M2 LINE L1 -3110 3030 2873 6 1487 256 258 32 0 chr4 118331095 118331157 -37298963 + ORR1D2 LTR MaLR 307 370 0 6 1487 252 77 0 0 chr4 118331662 118331701 -37298419 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 6 1487 352 250 95 32 chr4 118332479 118332574 -37297546 - MLT1A LTR MaLR -266 108 8 6 1487 192 40 0 0 chr4 118332645 118332670 -37297450 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1487 1192 44 0 0 chr4 118332670 118332807 -37297313 - B1_Mus1 SINE Alu -10 138 2 6 1487 222 236 312 18 chr4 118333092 118333204 -37296916 - L2a LINE L2 -9 3417 3273 6 1487 313 282 159 6 chr4 118333494 118333651 -37296469 - L2a LINE L2 -945 2474 2294 6 1487 471 100 0 0 chr4 118333677 118333747 -37296373 + (TATG)n Simple_repeat Simple_repeat 2 71 0 6 1487 242 303 0 0 chr4 118335377 118335453 -37294667 - L1MEg LINE L1 -4067 2333 2258 6 1487 382 164 0 27 chr4 118335541 118335616 -37294504 + ORR1D1 LTR MaLR 302 374 0 6 1487 895 297 60 3 chr4 118335618 118335949 -37294171 - L1_Mur3 LINE L1 -1139 4741 4392 6 1487 1140 100 0 0 chr4 118335958 118336277 -37293843 + (CA)n Simple_repeat Simple_repeat 1 319 0 6 1487 831 254 6 0 chr4 118336472 118336637 -37293483 + B3 SINE B2 51 216 0 6 1487 310 310 194 29 chr4 118336905 118337184 -37292936 - L1MEg LINE L1 -4468 1947 1623 6 1487 412 271 138 17 chr4 118339427 118339667 -37290453 - L1MD2 LINE L1 -408 5951 5683 6 1487 578 271 7 14 chr4 118339726 118339872 -37290248 - RSINE1 SINE B4 -18 147 3 6 1487 458 292 59 16 chr4 118340013 118340264 -37289856 + L1MB7 LINE L1 5424 5692 -486 6 1487 1068 219 25 0 chr4 118340268 118340464 -37289656 + B3 SINE B2 3 203 -13 6 1487 847 307 75 51 chr4 118340470 118340961 -37289159 + L1MB7 LINE L1 5680 6182 -2 6 1487 308 352 53 40 chr4 118340962 118341187 -37288933 - L1M4 LINE L1 -588 5591 5364 6 1487 788 241 48 43 chr4 118341269 118341297 -37288823 - B3 SINE B2 -6 210 176 6 1487 722 84 9 0 chr4 118341297 118341404 -37288716 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 1487 813 241 48 43 chr4 118341404 118341583 -37288537 - B3A SINE B2 -20 178 2 6 1487 573 88 0 0 chr4 118341633 118341713 -37288407 + (TTAA)n Simple_repeat Simple_repeat 1 80 0 6 1487 4709 218 35 12 chr4 118341713 118342046 -37288074 - Lx5 LINE L1 -16 7034 6692 6 1487 2044 143 117 3 chr4 118342046 118342396 -37287724 - ORR1B1 LTR MaLR -4 390 1 6 1487 4709 221 35 15 chr4 118342396 118343066 -37287054 - Lx5 LINE L1 -359 6691 5995 6 1487 235 242 45 104 chr4 118343118 118343252 -37286868 - L1M4 LINE L1 -900 5246 5121 6 1487 268 329 91 46 chr4 118343267 118343442 -37286678 - YREP_Mm Unknown Unknown -1408 404 222 6 1487 488 256 34 8 chr4 118343353 118343471 -37286649 + B1F2 SINE Alu 7 127 -22 6 1487 642 214 15 15 chr4 118343473 118343606 -37286514 + B1_Mur1 SINE Alu 5 137 -12 6 1487 337 223 2 3 chr4 118343608 118343675 -37286445 + B4A SINE B4 23 88 -77 6 1487 626 260 43 22 chr4 118343849 118344034 -37286086 - L1MEg LINE L1 -2193 3953 3765 6 1487 779 298 117 26 chr4 118344046 118344387 -37285733 - MLT1A LTR MaLR 0 374 3 6 1487 1565 37 27 0 chr4 118344403 118344591 -37285529 + B2_Mm1t SINE B2 1 193 0 6 1487 437 132 0 0 chr4 118344824 118344892 -37285228 + MTC LTR MaLR 10 77 -344 6 1487 348 186 0 0 chr4 118344894 118344953 -37285167 - ORR1E LTR MaLR -300 59 1 6 1487 2167 122 18 3 chr4 118346269 118346599 -37283521 - IAPLTR1a_Mm LTR ERVK -2 335 1 6 1487 6033 59 13 18 chr4 118346601 118347376 -37282744 - IAPEz-int LTR ERVK -2 6479 5709 6 1487 3148 20 0 0 chr4 118347367 118347724 -37282396 - IAPEz-int LTR ERVK -2124 4357 4001 6 1487 397 89 0 0 chr4 118347722 118347778 -37282342 - IAPEz-int LTR ERVK -3707 2774 2719 6 1487 11267 113 108 31 chr4 118347777 118349941 -37280179 - IAPEz-int LTR ERVK -4136 2345 17 6 1487 260 139 0 0 chr4 118349922 118349965 -37280155 - IAPEz-int LTR ERVK -1930 57 15 6 1487 365 89 56 69 chr4 118349970 118350042 -37280078 - IAPEz-int LTR ERVK -1914 73 3 6 1487 2167 122 18 3 chr4 118350046 118350376 -37279744 - IAPLTR1a_Mm LTR ERVK -2 335 1 6 1487 264 272 57 120 chr4 118350646 118350687 -37279433 - B2_Mm1t SINE B2 0 193 152 6 1487 375 23 0 0 chr4 118350687 118350731 -37279389 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1487 613 272 57 120 chr4 118350731 118350881 -37279239 - B3A SINE B2 -42 156 14 6 1487 288 261 90 11 chr4 118350878 118350967 -37279153 - B4A SINE B4 -195 97 2 6 1487 306 248 164 29 chr4 118351177 118351281 -37278839 - L1MEg LINE L1 -4103 2139 2022 6 1487 775 143 96 22 chr4 118351613 118351749 -37278371 - B1_Mus2 SINE Alu 0 147 2 6 1487 824 63 16 0 chr4 118352973 118353100 -37277020 + (TCTCTG)n Simple_repeat Simple_repeat 2 130 0 6 1487 284 220 16 142 chr4 118353392 118353519 -37276601 + MT2B LTR ERVL 152 262 -339 6 1487 590 118 212 21 chr4 118353408 118353541 -37276579 + B1_Mus1 SINE Alu 1 127 -21 6 1487 255 323 108 48 chr4 118353746 118353977 -37276143 + RLTR47_MM LTR ERV1 229 473 -59 6 1487 363 325 80 102 chr4 118353990 118354391 -37275729 + L1M4c LINE L1 916 1307 -5077 6 1487 1775 210 61 49 chr4 118355733 118356158 -37273962 + RMER1C Other Other 913 1342 0 6 1487 724 122 11 39 chr4 118356475 118356654 -37273466 + C-rich Low_complexity Low_complexity 3 176 0 6 1487 477 50 0 0 chr4 118356657 118356717 -37273403 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1487 373 350 40 40 chr4 118357737 118357939 -37272181 - L2c LINE L2 -177 3210 3009 6 1488 481 266 162 0 chr4 118359030 118359204 -37270916 - MER44D DNA MER2_type -469 236 32 6 1488 224 269 29 29 chr4 118359457 118359526 -37270594 - L2b LINE L2 -21 3354 3286 6 1488 2529 157 87 27 chr4 118359657 118360141 -37269979 + RMER20A LTR ERVK 4 516 0 6 1488 830 191 7 13 chr4 118360182 118360331 -37269789 + B1_Mur1 SINE Alu 1 148 -1 6 1488 210 146 0 47 chr4 118360331 118360363 -37269757 + A-rich Low_complexity Low_complexity 12 42 0 6 1488 763 182 130 57 chr4 118360831 118361023 -37269097 - B3 SINE B2 -9 207 2 6 1488 203 252 28 18 chr4 118361109 118361218 -37268902 + (TA)n Simple_repeat Simple_repeat 2 111 0 6 1488 22 0 0 0 chr4 118361233 118361255 -37268865 + AT_rich Low_complexity Low_complexity 1 22 0 6 1488 766 271 6 6 chr4 118361266 118361448 -37268672 + B3A SINE B2 1 182 -16 6 1488 339 212 0 0 chr4 118361460 118361545 -37268575 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 1488 817 212 96 0 chr4 118363793 118363991 -37266129 + ID_B1 SINE B4 1 217 -7 6 1488 298 347 105 6 chr4 118364261 118364432 -37265688 + MIRc SINE MIR 73 260 -8 6 1488 300 307 43 43 chr4 118364426 118364610 -37265510 + MIR3 SINE MIR 15 198 -10 6 1488 304 273 14 0 chr4 118365935 118366078 -37264042 + CT-rich Low_complexity Low_complexity 1 145 0 7 1488 392 354 29 53 chr4 118366207 118366365 -37263755 - L1MC LINE L1 -2345 3801 3645 7 1488 2443 177 32 68 chr4 118366365 118366954 -37263166 + RLTR12A LTR ERVK 1 568 0 7 1488 392 354 29 53 chr4 118366954 118367040 -37263080 - L1MC LINE L1 -2502 3644 3563 7 1488 24 0 0 0 chr4 118367084 118367108 -37263012 + AT_rich Low_complexity Low_complexity 1 24 0 7 1488 480 218 82 8 chr4 118367111 118367245 -37262875 + B1_Mur1 SINE Alu 5 148 -1 7 1488 425 276 86 0 chr4 118367308 118367471 -37262649 - L1MEg LINE L1 -2730 3589 3413 7 1488 1130 204 0 20 chr4 118367509 118367709 -37262411 + B3 SINE B2 16 211 -5 7 1488 347 296 73 39 chr4 118367741 118367973 -37262147 - L1MEg LINE L1 -2963 3356 3117 7 1488 1010 212 57 210 chr4 118368089 118368415 -37261705 - ORR1C2 LTR MaLR 0 384 142 7 1488 1032 211 231 130 chr4 118368415 118368899 -37261221 + MT2A LTR ERVL 1 533 0 7 1488 1010 212 57 210 chr4 118368899 118369025 -37261095 - ORR1C2 LTR MaLR -243 141 1 7 1488 923 269 66 19 chr4 118369140 118369398 -37260722 + B4 SINE B4 8 277 -15 7 1488 420 118 0 0 chr4 118369401 118369469 -37260651 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1488 407 316 99 54 chr4 118369541 118369762 -37260358 - L1MEg LINE L1 -4739 1676 1446 7 1488 456 209 53 26 chr4 118369786 118369899 -37260221 - Lx6 LINE L1 -636 6824 6709 7 1488 1712 301 11 53 chr4 118369897 118370465 -37259655 + Lx5 LINE L1 6503 7046 -4 7 1488 1848 142 56 6 chr4 118370709 118371029 -37259091 + RMER4B LTR ERVK 1 336 -249 7 1488 7722 149 24 11 chr4 118371029 118372893 -37257227 + Lx2B LINE L1 5106 6992 -8 7 1488 324 338 23 37 chr4 118373023 118373238 -37256882 - L1MEg LINE L1 -5832 568 357 7 1488 256 296 16 80 chr4 118373439 118373564 -37256556 - L1MEg LINE L1 -6231 169 53 7 1488 751 274 101 19 chr4 118373789 118374057 -37256063 + B4A SINE B4 3 292 0 7 1488 409 71 14 14 chr4 118374069 118374140 -37255980 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1488 479 336 95 0 chr4 118374505 118374642 -37255478 + RSINE1 SINE B4 16 165 0 7 1488 23 0 0 0 chr4 118374661 118374684 -37255436 + AT_rich Low_complexity Low_complexity 1 23 0 7 1488 224 259 112 11 chr4 118375898 118375986 -37254134 - MIRm SINE MIR -93 169 78 7 1488 29 47 0 0 chr4 118377811 118377854 -37252266 + AT_rich Low_complexity Low_complexity 1 43 0 7 1488 211 205 0 0 chr4 118378628 118378667 -37251453 + GA-rich Low_complexity Low_complexity 1 39 0 7 1488 567 0 0 0 chr4 118378667 118378730 -37251390 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1488 266 292 0 0 chr4 118378919 118378991 -37251129 + (TATG)n Simple_repeat Simple_repeat 3 74 0 7 1488 885 81 0 0 chr4 118379307 118379430 -37250690 + (TTCC)n Simple_repeat Simple_repeat 4 126 0 7 1488 3893 95 7 59 chr4 118379445 118380038 -37250082 - L1_Mus3 LINE L1 -1 6637 6076 7 1488 383 278 55 9 chr4 118380272 118380381 -37249739 - MIRb SINE MIR -96 172 59 7 1488 860 202 97 10 chr4 118381432 118381627 -37248493 - B3 SINE B2 0 216 5 7 1488 208 235 59 0 chr4 118381724 118381775 -37248345 - MIRb SINE MIR -103 165 112 7 1488 193 262 0 47 chr4 118382752 118382816 -37247304 - L3b LINE CR1 -292 190 130 7 1488 230 271 17 0 chr4 118383791 118383804 -37246316 + B4A SINE B4 75 134 -158 7 1488 280 196 0 0 chr4 118383804 118383850 -37246270 + PB1D9 SINE Alu 4 49 -71 7 1488 2217 116 6 14 chr4 118383850 118384200 -37245920 - RLTR15 LTR ERVK 0 359 13 7 1488 254 128 43 0 chr4 118384215 118384262 -37245858 + B1_Mm SINE Alu 97 145 -2 7 1488 548 272 127 88 chr4 118384279 118384633 -37245487 - RLTR9A LTR ERVK 0 368 1 7 1488 513 163 0 0 chr4 118384633 118384725 -37245395 + (CAA)n Simple_repeat Simple_repeat 2 93 0 7 1488 267 308 27 12 chr4 118384748 118384832 -37245288 + L2b LINE L2 3247 3382 -44 7 1488 277 277 30 36 chr4 118384988 118385153 -37244967 + L1M5 LINE L1 5585 5748 -376 7 1488 936 224 51 0 chr4 118385216 118385412 -37244708 + B3 SINE B2 1 206 -10 7 1488 475 278 68 99 chr4 118385518 118385815 -37244305 + ORR1E LTR MaLR 60 374 0 7 1488 462 65 0 0 chr4 118385882 118385944 -37244176 + (CAA)n Simple_repeat Simple_repeat 2 63 0 7 1488 2668 151 22 11 chr4 118386346 118386809 -37243311 - Lx4B LINE L1 -1 7057 6590 7 1488 243 79 0 0 chr4 118387495 118387533 -37242587 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 1488 21 36 0 0 chr4 118387731 118387759 -37242361 + AT_rich Low_complexity Low_complexity 1 28 0 7 1488 368 372 69 69 chr4 118387870 118388202 -37241918 - MTE-int LTR MaLR -676 904 573 7 1488 25 65 0 0 chr4 118388386 118388432 -37241688 + AT_rich Low_complexity Low_complexity 1 46 0 7 1488 670 143 206 0 chr4 118388432 118388621 -37241499 - Lx9 LINE L1 -2 7642 7415 7 1488 11319 75 13 9 chr4 118388731 118390330 -37239790 - MusHAL1 LINE L1 -631 2081 476 7 1488 243 88 0 0 chr4 118390332 118390366 -37239754 + (TCC)n Simple_repeat Simple_repeat 3 36 0 7 1488 519 211 154 0 chr4 118390391 118390514 -37239606 - B1_Mur2 SINE Alu -6 143 2 7 1488 540 301 89 80 chr4 118390543 118390868 -37239252 - ORR1E LTR MaLR -19 340 13 7 1488 541 335 81 0 chr4 118390946 118391256 -37238864 + L1M2 LINE L1 2488 2822 -3321 7 1488 2327 0 0 0 chr4 118391263 118391517 -37238603 + L1Md_T LINE L1 6329 6582 0 7 1488 2346 141 76 9 chr4 118391559 118391995 -37238125 + RLTR11A LTR ERVK 8 472 -56 7 1488 606 284 61 12 chr4 118391995 118392241 -37237879 + L1M2 LINE L1 2855 3112 -3031 7 1488 21 0 0 0 chr4 118394704 118394725 -37235395 + AT_rich Low_complexity Low_complexity 1 21 0 7 1488 329 306 58 45 chr4 118394743 118394897 -37235223 - L2a LINE L2 -185 3241 3086 7 1488 530 245 38 50 chr4 118395084 118395243 -37234877 + RSINE1 SINE B4 3 159 -6 7 1488 606 39 0 0 chr4 118395250 118395327 -37234793 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1488 468 0 0 0 chr4 118395327 118395378 -37234742 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1488 3442 33 2 0 chr4 118395468 118395863 -37234257 + MTA_Mm LTR MaLR 1 396 0 7 1488 9773 16 1 0 chr4 118395863 118396960 -37233160 + MTA_Mm-int LTR MaLR 1 1098 0 7 1488 3442 33 2 0 chr4 118396960 118397355 -37232765 + MTA_Mm LTR MaLR 1 396 0 7 1488 441 0 0 0 chr4 118398518 118398567 -37231553 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1488 201 272 0 47 chr4 118400160 118400245 -37229875 + CT-rich Low_complexity Low_complexity 2 82 0 7 1488 237 250 0 0 chr4 118400161 118400221 -37229899 + T-rich Low_complexity Low_complexity 1 60 0 7 1488 260 379 62 10 chr4 118400366 118400558 -37229562 - MIRb SINE MIR -61 207 6 7 1488 743 197 14 7 chr4 118400636 118400784 -37229336 + B1_Mur2 SINE Alu 1 149 0 7 1488 1148 211 9 0 chr4 118401514 118401727 -37228393 + B3 SINE B2 2 216 0 7 1488 921 223 85 52 chr4 118402934 118403204 -37226916 + Lx9 LINE L1 6957 7235 -409 7 1488 204 228 0 0 chr4 118404095 118404152 -37225968 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 7 1488 875 291 46 18 chr4 118404179 118404462 -37225658 - B4 SINE B4 -1 291 1 7 1488 482 263 29 22 chr4 118405932 118406068 -37224052 - B1F1 SINE Alu -10 139 3 7 1488 996 291 81 15 chr4 118408513 118408845 -37221275 - MTE2b LTR MaLR -25 354 1 7 1488 290 214 0 0 chr4 118409504 118409560 -37220560 + PB1D10 SINE Alu 4 59 -58 7 1488 206 105 0 95 chr4 118409718 118409781 -37220339 + GA-rich Low_complexity Low_complexity 3 59 0 7 1488 306 0 0 0 chr4 118410727 118410761 -37219359 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1488 315 49 0 0 chr4 118410761 118410801 -37219319 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1488 546 278 0 15 chr4 118410827 118410962 -37219158 + ID_B1 SINE B4 84 216 -8 7 1488 430 225 7 7 chr4 118410993 118411136 -37218984 + (TA)n Simple_repeat Simple_repeat 2 144 0 7 1488 555 115 0 0 chr4 118411215 118411293 -37218827 + MERVL_2A-int LTR ERVL 4279 4356 -1405 7 1488 1074 204 9 5 chr4 118411297 118411509 -37218611 - RLTR14 LTR ERV1 -2 380 168 7 1488 1502 209 23 29 chr4 118411535 118411845 -37218275 + MERVL_2A-int LTR ERVL 4472 4779 -982 7 1488 866 186 307 77 chr4 118411845 118412171 -37217949 - MT2A LTR ERVL -90 443 43 7 1488 243 0 0 0 chr4 118412595 118412622 -37217498 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1488 406 191 90 52 chr4 118412916 118413059 -37217061 - B1_Mur1 SINE Alu -1 147 3 7 1488 453 336 48 30 chr4 118413413 118413708 -37216412 - MLT2B3 LTR ERVL -253 301 2 7 1488 2021 124 42 37 chr4 118414004 118414405 -37215715 + RLTR9D LTR ERVK 1 403 0 7 1488 6979 213 52 107 chr4 118414406 118416006 -37214114 + RMER16-int LTR ERVK 2 1688 -3718 7 1488 242 29 29 0 chr4 118416006 118416041 -37214079 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1488 6979 238 135 106 chr4 118416041 118417740 -37212380 + RMER16-int LTR ERVK 1689 3328 -2078 7 1488 2936 6 0 0 chr4 118417740 118418062 -37212058 - RLTRETN_Mm LTR ERVK 0 322 1 7 1488 6979 238 135 106 chr4 118418062 118418795 -37211325 + RMER16-int LTR ERVK 3329 4175 -1231 7 1488 1176 170 84 21 chr4 118418835 118419166 -37210954 + ETnERV2-int LTR ERVK 6128 6422 -984 7 1488 358 131 71 14 chr4 118419379 118419449 -37210671 + ETnERV2-int LTR ERVK 7331 7404 -2 7 1488 1851 119 162 39 chr4 118419450 118419807 -37210313 + RLTR9D LTR ERVK 1 401 -2 7 1488 234 146 36 0 chr4 118419813 118419868 -37210252 + (TTAAA)n Simple_repeat Simple_repeat 1 57 0 7 1488 446 299 58 58 chr4 118420036 118420260 -37209860 - Lx7 LINE L1 -335 7361 7138 7 1488 238 301 113 28 chr4 118421492 118421598 -37208522 + ID_B1 SINE B4 84 198 -26 7 1488 239 233 27 27 chr4 118421827 118421902 -37208218 + GA-rich Low_complexity Low_complexity 3 77 0 7 1488 689 250 5 78 chr4 118422765 118422969 -37207151 + B3 SINE B2 27 215 -1 7 1488 238 245 38 38 chr4 118423345 118423451 -37206669 + MER63D DNA AcHobo 43 148 -913 7 1488 700 124 29 28 chr4 118423446 118423593 -37206527 + B2_Mm1t SINE B2 47 193 0 7 1488 353 289 131 17 chr4 118423555 118423791 -37206329 + MER63D DNA AcHobo 118 380 -681 7 1488 343 160 196 54 chr4 118424197 118424309 -37205811 + B1_Mur1 SINE Alu 9 136 -13 7 1488 216 0 0 0 chr4 118424309 118424333 -37205787 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1488 383 278 17 17 chr4 118424407 118424524 -37205596 + ID_B1 SINE B4 84 200 -24 7 1488 745 111 0 0 chr4 118425706 118425814 -37204306 - B2_Mm2 SINE B2 -85 110 3 7 1488 418 268 226 0 chr4 118427226 118427394 -37202726 + B3 SINE B2 3 208 -8 7 1488 255 225 0 0 chr4 118427475 118427531 -37202589 + MIR SINE MIR 96 152 -56 7 1488 465 314 56 42 chr4 118427599 118427812 -37202308 + B4A SINE B4 77 292 0 8 1488 531 0 0 0 chr4 118427825 118427884 -37202236 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1488 237 271 0 0 chr4 118427886 118427945 -37202175 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1488 252 0 0 0 chr4 118428163 118428191 -37201929 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1488 22 35 0 0 chr4 118428220 118428249 -37201871 + AT_rich Low_complexity Low_complexity 1 29 0 8 1488 251 171 65 13 chr4 118429177 118429254 -37200866 - Lx7 LINE L1 0 7696 7616 8 1488 584 50 12 0 chr4 118429314 118429394 -37200726 + (GA)n Simple_repeat Simple_repeat 1 81 0 8 1488 637 316 36 16 chr4 118429413 118429661 -37200459 - Lx7 LINE L1 -328 7368 7116 8 1488 209 315 14 0 chr4 118430900 118430973 -37199147 + GA-rich Low_complexity Low_complexity 3 76 0 8 1488 1946 111 101 12 chr4 118431751 118432089 -37198031 - RLTR9A LTR ERVK 0 368 1 8 1488 352 158 25 50 chr4 118432090 118432170 -37197950 - ETnERV2-int LTR ERVK -2 7404 7327 8 1488 1167 117 0 0 chr4 118432294 118432474 -37197646 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1488 3430 202 18 74 chr4 118432474 118433348 -37196772 - ETnERV2-int LTR ERVK -4532 2874 1415 8 1488 1378 172 3 50 chr4 118433449 118433731 -37196389 - RLTR45-int LTR ERVK -4045 3199 2931 8 1488 35582 83 24 18 chr4 118433747 118440051 -37190069 - L1Md_F2 LINE L1 -19 6563 238 8 1488 3845 155 88 60 chr4 118440055 118440901 -37189219 - RLTR45-int LTR ERVK -4299 2945 2101 8 1488 225 0 0 0 chr4 118440913 118440938 -37189182 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 8 1488 2110 133 19 40 chr4 118441242 118441618 -37188502 - RLTR9A LTR ERVK 0 368 1 8 1488 540 313 15 34 chr4 118441696 118441901 -37188219 + B3 SINE B2 5 205 -11 8 1488 641 225 7 14 chr4 118442280 118442424 -37187696 + B1_Mus1 SINE Alu 5 147 -1 8 1488 238 231 33 11 chr4 118442429 118442521 -37187599 + MER63C DNA AcHobo 58 151 -779 8 1488 441 266 130 9 chr4 118442579 118442810 -37187310 + MER63C DNA AcHobo 118 376 -554 8 1488 743 32 0 11 chr4 118443050 118443145 -37186975 + (GGAGA)n Simple_repeat Simple_repeat 4 97 0 8 1488 1042 178 83 101 chr4 118443386 118443526 -37186594 - RMER6D LTR ERVK -12 678 499 8 1488 1132 62 14 0 chr4 118443526 118443671 -37186449 + B1_Mus1 SINE Alu 2 148 0 8 1488 1146 203 98 51 chr4 118443671 118444239 -37185881 - RMER6D LTR ERVK -157 533 78 8 1488 180 143 57 0 chr4 118444457 118444492 -37185628 - MIRc SINE MIR -172 96 60 8 1488 2109 185 127 31 chr4 118444890 118445408 -37184712 + RLTR12A LTR ERVK 1 568 0 8 1488 3993 174 40 25 chr4 118445421 118446263 -37183857 + RLTR13A LTR ERVK 1 855 0 8 1488 996 298 52 28 chr4 118446297 118446760 -37183360 - ERVL-B4-int LTR ERVL -1626 4088 3615 8 1488 244 275 0 28 chr4 118446968 118447039 -37183081 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 8 1488 1747 213 29 3 chr4 118447049 118447425 -37182695 - ORR1B1 LTR MaLR -8 386 1 8 1488 7111 184 37 29 chr4 118447425 118448921 -37181199 - ORR1B1-int LTR MaLR 0 1509 2 8 1488 320 167 0 0 chr4 118448922 118448982 -37181138 - ORR1B1 LTR MaLR 0 394 335 8 1488 201 39 0 0 chr4 118448994 118449020 -37181100 + (TTAG)n Simple_repeat Simple_repeat 3 28 0 8 1488 713 306 5 0 chr4 118449034 118449230 -37180890 - B3 SINE B2 -11 205 9 8 1488 1554 199 30 18 chr4 118449239 118449520 -37180600 - ORR1B1 LTR MaLR -57 337 54 8 1488 2995 218 142 37 chr4 118449520 118450336 -37179784 + RMER19B LTR ERVK 1 902 0 8 1488 1554 199 30 18 chr4 118450336 118450387 -37179733 - ORR1B1 LTR MaLR -341 53 1 8 1488 538 299 110 31 chr4 118450422 118450578 -37179542 + L1M4 LINE L1 4520 4680 -1466 8 1488 1757 197 63 8 chr4 118450578 118450942 -37179178 + ORR1C2 LTR MaLR 1 384 0 8 1488 538 299 110 31 chr4 118450942 118451241 -37178879 + L1M4 LINE L1 4681 5011 -1135 8 1488 2675 233 48 29 chr4 118451698 118452388 -37177732 + RMER1C Other Other 638 1340 -2 8 1488 453 278 68 0 chr4 118452509 118452642 -37177478 + B1_Mur1 SINE Alu 2 143 -6 8 1488 224 281 18 0 chr4 118452719 118452776 -37177344 + B4A SINE B4 88 145 -147 8 1488 1404 126 87 11 chr4 118453664 118453930 -37176190 + ORR1A2 LTR MaLR 3 288 -39 8 1488 377 286 174 0 chr4 118455267 118455445 -37174675 + B3 SINE B2 3 211 -5 8 1488 191 358 21 0 chr4 118455510 118455605 -37174515 + MIRb SINE MIR 88 184 -84 8 1488 321 307 14 48 chr4 118455654 118455801 -37174319 + B4A SINE B4 103 244 -48 8 1488 666 82 0 0 chr4 118455822 118455920 -37174200 + (TC)n Simple_repeat Simple_repeat 1 98 0 8 1488 459 35 0 0 chr4 118455920 118455976 -37174144 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1488 281 288 51 92 chr4 118456188 118456383 -37173737 + L1M5 LINE L1 4958 5144 -1002 8 1488 24 0 0 0 chr4 118457139 118457163 -37172957 + AT_rich Low_complexity Low_complexity 1 24 0 8 1488 1113 136 51 0 chr4 118457167 118457344 -37172776 + B2_Mm2 SINE B2 1 186 -9 8 1488 180 0 0 0 chr4 118457510 118457530 -37172590 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1488 491 336 38 0 chr4 118457545 118457756 -37172364 - Lx7 LINE L1 -360 7336 7118 8 1488 240 323 160 35 chr4 118458222 118458453 -37171667 - MIR SINE MIR 0 262 3 8 1488 482 290 78 0 chr4 118460114 118460272 -37169848 + B3 SINE B2 35 204 -12 8 1488 182 280 53 13 chr4 118460449 118460525 -37169595 + MIRb SINE MIR 124 202 -66 8 1488 496 267 7 36 chr4 118460693 118460833 -37169287 + B1_Mur3 SINE Alu 12 147 -2 8 1488 501 273 99 9 chr4 118461033 118461255 -37168865 + MER63D DNA AcHobo 139 380 -681 8 1488 965 55 0 8 chr4 118461518 118461647 -37168473 + (GGAGA)n Simple_repeat Simple_repeat 5 132 0 8 1488 294 138 0 0 chr4 118461647 118461705 -37168415 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1488 1303 196 72 14 chr4 118461900 118462262 -37167858 - RMER6C LTR ERVK -12 678 296 8 1488 204 232 0 42 chr4 118462429 118462501 -37167619 + A-rich Low_complexity Low_complexity 2 70 0 8 1488 1120 89 7 0 chr4 118462956 118463102 -37167018 + B1_Mm SINE Alu 1 147 0 8 1488 252 299 65 0 chr4 118464644 118464721 -37165399 + MIRb SINE MIR 103 184 -84 8 1488 466 277 0 16 chr4 118465387 118465508 -37164612 + ID_B1 SINE B4 91 209 -15 8 1488 230 311 22 11 chr4 118465556 118465647 -37164473 + RSINE1 SINE B4 14 105 -60 8 1488 363 23 0 0 chr4 118465680 118465724 -37164396 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1488 180 77 0 0 chr4 118465748 118465774 -37164346 + (CAA)n Simple_repeat Simple_repeat 1 26 0 8 1488 228 245 87 78 chr4 118465774 118465889 -37164231 + L1MC LINE L1 4806 4921 -1225 8 1488 310 292 70 45 chr4 118465969 118466170 -37163950 + L1M5 LINE L1 4959 5164 -982 8 1488 25 0 0 0 chr4 118466244 118466269 -37163851 + AT_rich Low_complexity Low_complexity 1 25 0 8 1488 3583 20 0 0 chr4 118466616 118467012 -37163108 + MTA_Mm LTR MaLR 1 396 0 8 1488 23 54 0 0 chr4 118467215 118467252 -37162868 + AT_rich Low_complexity Low_complexity 1 37 0 8 1488 232 245 19 0 chr4 118467709 118467762 -37162358 + CT-rich Low_complexity Low_complexity 6 59 0 8 1488 212 137 20 0 chr4 118467775 118467826 -37162294 + (CAGAGA)n Simple_repeat Simple_repeat 4 55 0 8 1488 394 278 0 22 chr4 118467923 118468107 -37162013 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 8 1488 261 359 25 17 chr4 118468231 118468350 -37161770 + PB1D9 SINE Alu 1 120 0 8 1488 216 275 76 76 chr4 118469551 118469669 -37160451 + MIR SINE MIR 100 217 -45 8 1488 333 68 0 0 chr4 118470368 118470412 -37159708 + (CTG)n Simple_repeat Simple_repeat 3 46 0 8 1488 4090 76 35 2 chr4 118470607 118471158 -37158962 + L1_Mus3 LINE L1 6066 6634 -4 8 1488 327 238 71 0 chr4 118471430 118471514 -37158606 + RMER17C-int LTR ERVK 379 468 -2770 8 1488 707 315 8 20 chr4 118471529 118471775 -37158345 + RodERV21-int LTR ERV1 709 951 -4040 8 1488 519 162 0 0 chr4 118471784 118471926 -37158194 + (TTG)n Simple_repeat Simple_repeat 2 143 0 8 1488 3232 269 24 29 chr4 118472075 118472997 -37157123 + RodERV21-int LTR ERV1 1070 1986 -3005 8 1488 1610 55 10 0 chr4 118474080 118474279 -37155841 + L1_Mm LINE L1 5402 5602 -281 8 1488 26 30 0 0 chr4 118474547 118474580 -37155540 + AT_rich Low_complexity Low_complexity 1 33 0 8 1488 296 373 15 0 chr4 118475020 118475154 -37154966 + ID_B1 SINE B4 85 220 -4 8 1488 2843 219 73 60 chr4 118476146 118476752 -37153368 + L1_Mus1 LINE L1 220 889 -5749 8 1488 2027 36 60 0 chr4 118476752 118477004 -37153116 + L1Md_F2 LINE L1 6315 6581 -1 8 1488 3452 117 1 16 chr4 118477004 118477860 -37152260 + L1_Mus1 LINE L1 861 1715 -4168 8 1488 18636 99 4 17 chr4 118477860 118481384 -37148736 + L1_Mus1 LINE L1 3094 6567 0 8 1488 398 253 194 6 chr4 118482498 118482673 -37147447 + B3 SINE B2 3 210 -6 8 1488 452 245 47 47 chr4 118482920 118483091 -37147029 + B4A SINE B4 122 292 0 8 1488 186 191 0 0 chr4 118483103 118483150 -37146970 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1488 1156 150 0 16 chr4 118484312 118484495 -37145625 + B2_Mm2 SINE B2 1 180 -15 8 1488 202 220 9 57 chr4 118484604 118484710 -37145410 + A-rich Low_complexity Low_complexity 3 103 0 8 1488 682 288 10 10 chr4 118484710 118484910 -37145210 - Lx7 LINE L1 -379 7317 7118 8 1488 210 385 64 0 chr4 118486029 118486138 -37143982 + ID_B1 SINE B4 89 204 -20 8 1488 422 337 95 26 chr4 118487290 118487479 -37142641 + B3 SINE B2 3 204 -12 8 1488 608 238 0 27 chr4 118487917 118488064 -37142056 + B1_Mus1 SINE Alu 5 147 -1 8 1488 579 74 0 0 chr4 118488710 118488791 -37141329 + (GA)n Simple_repeat Simple_repeat 2 82 0 8 23 7431 98 19 15 chr4 118488815 118490547 -37139573 + L1VL2 LINE L1 66 1815 -1800 8 1489 288 0 0 0 chr4 118490547 118490579 -37139541 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 8 1489 1069 82 7 0 chr4 118490579 118490714 -37139406 - B1_Mus1 SINE Alu -12 136 1 8 1489 7431 73 23 26 chr4 118490714 118490936 -37139184 + L1VL2 LINE L1 1816 2028 -1587 8 1489 893 304 21 5 chr4 118491037 118491466 -37138654 - L1_Mur3 LINE L1 -1235 4645 4210 8 1489 367 35 0 34 chr4 118492252 118492311 -37137809 + (GGGTG)n Simple_repeat Simple_repeat 3 59 0 8 1489 710 150 0 0 chr4 118492508 118492621 -37137499 + B1_Mus1 SINE Alu 24 136 -12 8 1489 279 0 0 0 chr4 118492626 118492657 -37137463 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1489 2237 178 92 46 chr4 118492795 118493402 -37136718 - RMER6C LTR ERVK -7 683 49 8 1489 40996 21 1 6 chr4 118494028 118500000 -37130120 + L1Md_T LINE L1 413 6349 -233 8 1489 1893 43 0 4 chr4 118500002 118500233 -37129887 + L1Md_T LINE L1 6352 6581 -1 1 1489 332 292 38 37 chr4 118500602 118500764 -37129356 + L1M4 LINE L1 4843 5006 -1134 2 1489 246 234 61 30 chr4 118503184 118503250 -37126870 + MIRc SINE MIR 100 167 -101 3 1489 297 333 8 24 chr4 118503938 118504064 -37126056 + ID_B1 SINE B4 86 209 -15 4 1489 459 35 0 0 chr4 118504239 118504296 -37125824 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1489 270 261 56 35 chr4 118504561 118504704 -37125416 + L1M5 LINE L1 5022 5167 -979 6 1489 1354 45 0 11 chr4 118505824 118506004 -37124116 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1489 556 129 60 15 chr4 118506004 118506138 -37123982 + CT-rich Low_complexity Low_complexity 1 140 0 8 1489 271 202 22 0 chr4 118506182 118506271 -37123849 + CT-rich Low_complexity Low_complexity 3 93 0 8 1489 270 0 0 0 chr4 118506268 118506298 -37123822 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 1489 219 36 0 0 chr4 118506310 118506338 -37123782 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1489 6834 98 20 5 chr4 118506343 118507731 -37122389 + L1_Mus2 LINE L1 5153 6566 0 1 1489 437 266 34 11 chr4 118507768 118507943 -37122177 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 1 1489 292 360 0 18 chr4 118508019 118508132 -37121988 + PB1D10 SINE Alu 7 117 0 1 1489 1931 126 12 51 chr4 118509310 118509645 -37120475 + RLTRETN_Mm LTR ERVK 1 322 0 1 1489 627 89 0 10 chr4 118509739 118509841 -37120279 + L1_Mus1 LINE L1 6467 6567 0 1 1489 28 0 0 0 chr4 118509861 118509889 -37120231 + AT_rich Low_complexity Low_complexity 1 28 0 1 1489 558 0 0 0 chr4 118509912 118509974 -37120146 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 1 1489 217 269 85 85 chr4 118510014 118510132 -37119988 + MIRb SINE MIR 100 217 -45 1 1489 333 0 0 0 chr4 118510443 118510480 -37119640 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1489 303 194 0 0 chr4 118510882 118510944 -37119176 - Lx3B LINE L1 -3 6970 6909 2 1489 4121 39 2 0 chr4 118511036 118511524 -37118596 + L1Md_F3 LINE L1 6095 6583 -1 2 1489 911 270 34 4 chr4 118511568 118511806 -37118314 - RLTR19-int LTR ERVK -1756 4381 4137 2 1489 4947 55 0 3 chr4 118512405 118513010 -37117110 + L1Md_F2 LINE L1 5967 6569 -13 2 1489 409 292 90 7 chr4 118513633 118513778 -37116342 + B3 SINE B2 48 204 -12 2 1489 191 266 60 48 chr4 118513956 118514039 -37116081 + MIRb SINE MIR 119 202 -66 2 1489 698 207 7 20 chr4 118514183 118514319 -37115801 + B1_Mur4 SINE Alu 5 141 -9 2 1489 288 0 0 0 chr4 118514319 118514351 -37115769 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1489 698 207 7 20 chr4 118514351 118514362 -37115758 + B1_Mur4 SINE Alu 142 150 0 2 1489 904 131 29 14 chr4 118514416 118514556 -37115564 + B1_Mus1 SINE Alu 1 142 -6 2 1489 531 125 0 0 chr4 118515194 118515298 -37114822 + (GA)n Simple_repeat Simple_repeat 1 104 0 2 1489 331 213 191 0 chr4 118515506 118515600 -37114520 - RMER6C LTR ERVK -29 661 550 3 1489 962 138 13 0 chr4 118515601 118515760 -37114360 + L1_Mm LINE L1 4261 4421 -1462 3 1489 5338 77 32 3 chr4 118515760 118516480 -37113640 + L1_Mus3 LINE L1 5891 6631 -7 3 1489 195 69 0 0 chr4 118516491 118516520 -37113600 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1489 335 260 60 0 chr4 118516526 118516626 -37113494 - RMER6C LTR ERVK -537 153 48 3 1489 661 310 5 14 chr4 118517692 118517889 -37112231 + Lx7 LINE L1 7118 7315 -381 3 1489 185 0 0 39 chr4 118517889 118517915 -37112205 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1489 661 310 5 14 chr4 118517915 118517933 -37112187 + Lx7 LINE L1 7316 7331 -365 3 1489 972 131 0 18 chr4 118518039 118518202 -37111918 - B2_Mm2 SINE B2 -12 183 24 3 1489 32 0 0 0 chr4 118518212 118518244 -37111876 + AT_rich Low_complexity Low_complexity 1 32 0 3 1489 36331 43 0 3 chr4 118519199 118524470 -37105650 + L1Md_T LINE L1 238 5589 -297 3 1489 8575 28 1 14 chr4 118524470 118524901 -37105219 + L1Md_T LINE L1 5590 6020 -565 3 1489 1579 42 5 10 chr4 118524901 118525094 -37105026 + B2_Mm1a SINE B2 2 193 0 3 1489 8575 28 1 14 chr4 118525094 118525671 -37104449 + L1Md_T LINE L1 6021 6585 0 3 1489 334 329 74 25 chr4 118525897 118525924 -37104196 - B4A SINE B4 0 292 266 4 1489 234 116 0 0 chr4 118525924 118525967 -37104153 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1489 334 329 74 25 chr4 118525967 118526101 -37104019 - B4A SINE B4 -27 265 123 4 1489 556 131 9 66 chr4 118526179 118526285 -37103835 - B2_Mm2 SINE B2 -93 102 3 4 1489 254 305 56 0 chr4 118526307 118526429 -37103691 - MIR SINE MIR -87 175 50 4 1489 495 207 99 0 chr4 118526460 118526581 -37103539 - B3 SINE B2 -3 213 81 4 1489 3487 44 16 2 chr4 118527846 118528276 -37101844 - L1_Mus1 LINE L1 0 6567 6132 4 1489 250 156 0 0 chr4 118528276 118528321 -37101799 + MTE2b LTR MaLR 96 140 -239 4 1489 690 322 78 4 chr4 118528322 118528590 -37101530 - ORR1D2 LTR MaLR -82 288 1 4 1489 328 347 34 7 chr4 118528594 118528740 -37101380 + MTE2b LTR MaLR 142 291 -88 4 1489 1104 262 31 50 chr4 118528740 118529025 -37101095 - ORR1D1 LTR MaLR 0 374 100 4 1489 4954 52 19 2 chr4 118529025 118529620 -37100500 - RLTR1D LTR ERV1 0 605 1 4 1489 1104 262 31 50 chr4 118529620 118529715 -37100405 - ORR1D1 LTR MaLR -275 99 2 4 1489 282 268 23 11 chr4 118529715 118529802 -37100318 + MTE2b LTR MaLR 287 374 -5 4 1489 5245 92 124 15 chr4 118530440 118530898 -37099222 + L1_Mus3 LINE L1 5759 6285 -353 5 1489 1033 222 103 120 chr4 118530898 118531297 -37098823 + RLTR9C LTR ERVK 2 393 0 5 1489 5245 92 124 15 chr4 118531297 118531360 -37098760 + L1_Mus3 LINE L1 6286 6369 -269 5 1489 3115 66 5 2 chr4 118531360 118531755 -37098365 - MTA_Mm LTR MaLR 0 396 1 5 1489 5245 92 124 15 chr4 118531755 118532019 -37098101 + L1_Mus3 LINE L1 6370 6631 -7 5 1489 3338 236 83 32 chr4 118533350 118534319 -37095801 - RMER19B LTR ERVK 0 902 3 5 1489 959 203 53 18 chr4 118535467 118535693 -37094427 + RLTR19-int LTR ERVK 4136 4369 -1768 5 1489 325 130 0 55 chr4 118535830 118535903 -37094217 + Lx3C LINE L1 6908 6976 0 5 1489 216 289 0 67 chr4 118536620 118536724 -37093396 - MIRb SINE MIR -65 203 107 5 1489 265 369 0 18 chr4 118538005 118538118 -37092002 - PB1D10 SINE Alu 0 117 7 5 1489 378 218 21 75 chr4 118538194 118538382 -37091738 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 5 1489 456 19 0 0 chr4 118538401 118538454 -37091666 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1489 812 29 0 10 chr4 118538494 118538598 -37091522 + (GAA)n Simple_repeat Simple_repeat 2 104 0 6 1489 181 344 149 18 chr4 118538854 118539076 -37091044 + MIR SINE MIR 12 262 0 6 1489 29 0 0 0 chr4 118539630 118539659 -37090461 + AT_rich Low_complexity Low_complexity 1 29 0 6 1489 299 324 69 63 chr4 118539729 118540078 -37090042 - L1M5 LINE L1 -979 5167 4817 6 1489 315 0 0 0 chr4 118540078 118540113 -37090007 + (TTCTG)n Simple_repeat Simple_repeat 1 35 0 6 1489 396 0 0 0 chr4 118540168 118540212 -37089908 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1489 257 300 22 11 chr4 118540244 118540335 -37089785 - RSINE1 SINE B4 -60 105 14 6 1489 353 252 111 9 chr4 118540383 118540491 -37089629 - ID_B1 SINE B4 -15 209 91 6 1489 241 343 69 0 chr4 118541169 118541339 -37088781 - MIRb SINE MIR -84 184 5 6 1489 382 310 170 0 chr4 118543534 118543834 -37086286 - L1M4 LINE L1 -953 5193 4843 6 1489 434 253 70 27 chr4 118544345 118544532 -37085588 - L1M4 LINE L1 -1410 4736 4542 6 1489 920 297 146 11 chr4 118545134 118545644 -37084476 + Lx8 LINE L1 6944 7383 -90 7 1489 518 244 16 8 chr4 118545876 118546004 -37084116 + MTEb LTR MaLR 12 140 -239 7 1489 571 318 89 22 chr4 118546005 118546197 -37083923 - ORR1D2 LTR MaLR -82 288 84 7 1489 2926 51 4 136 chr4 118546197 118546388 -37083732 + MTA_Mm LTR MaLR 1 192 -204 7 1489 1176 62 14 0 chr4 118546388 118546534 -37083586 + B1_Mur4 SINE Alu 3 150 0 7 1489 2926 51 4 136 chr4 118546534 118546798 -37083322 + MTA_Mm LTR MaLR 193 396 0 7 1489 571 318 89 22 chr4 118546798 118546875 -37083245 - ORR1D2 LTR MaLR -287 83 1 7 1489 431 303 32 0 chr4 118546875 118547028 -37083092 + MTEb LTR MaLR 136 293 -86 7 1489 1095 259 59 42 chr4 118547028 118547383 -37082737 - ORR1D1 LTR MaLR -2 372 12 7 1489 290 289 22 11 chr4 118547393 118547484 -37082636 + MTEb LTR MaLR 287 378 -1 7 1489 3039 196 85 23 chr4 118547625 118548316 -37081804 + RMER19B LTR ERVK 169 902 0 7 1489 770 227 29 133 chr4 118548316 118548510 -37081610 + ORR1B1 LTR MaLR 137 337 -57 7 1489 650 280 23 23 chr4 118548510 118548726 -37081394 + B3 SINE B2 1 216 0 7 1489 770 227 29 133 chr4 118548726 118548783 -37081337 + ORR1B1 LTR MaLR 338 364 -30 7 1489 4161 62 2 2 chr4 118548783 118549286 -37080834 + RLTR1C LTR ERV1 1 503 0 7 1489 770 227 29 133 chr4 118549286 118549312 -37080808 + ORR1B1 LTR MaLR 365 386 -8 7 1489 4242 207 55 10 chr4 118549318 118550396 -37079724 + ORR1B1-int LTR MaLR 3 1128 -381 7 1489 33315 82 18 31 chr4 118550396 118554825 -37075295 + L1_Mus2 LINE L1 189 4553 -1330 8 1489 459 0 0 0 chr4 118554825 118554876 -37075244 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1489 33315 85 2 39 chr4 118554876 118555564 -37074556 + L1_Mus2 LINE L1 4554 5216 -667 8 1489 1180 68 0 13 chr4 118555564 118555713 -37074407 + B1_Mus1 SINE Alu 2 148 0 8 1489 33315 96 49 53 chr4 118555713 118557056 -37073064 + L1_Mus2 LINE L1 5217 6566 0 8 1489 446 289 30 3 chr4 118557071 118557226 -37072894 + ERVL-B4-int LTR ERVL 3946 4106 -1379 8 1489 2135 176 149 22 chr4 118557252 118557756 -37072364 - RLTR12A LTR ERVK 0 568 1 8 1489 273 89 0 0 chr4 118558282 118558327 -37071793 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1489 987 206 139 3 chr4 118558419 118558706 -37071414 + RMER6C LTR ERVK 48 373 -317 8 1489 377 53 0 18 chr4 118558706 118558763 -37071357 + (GGA)n Simple_repeat Simple_repeat 3 58 0 8 1489 365 0 22 0 chr4 118558753 118558798 -37071322 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1489 1309 210 81 16 chr4 118558798 118559170 -37070950 + RMER6C LTR ERVK 295 690 0 8 1489 384 294 101 11 chr4 118559629 118559818 -37070302 - MER63D DNA AcHobo -695 366 161 9 1489 186 71 0 0 chr4 118559822 118559850 -37070270 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1489 656 201 59 15 chr4 118560049 118560185 -37069935 - B1_Mus1 SINE Alu -2 146 5 9 1489 451 321 73 3 chr4 118560619 118560808 -37069312 - B3 SINE B2 -12 204 3 9 1489 228 292 15 0 chr4 118561666 118561731 -37068389 + CT-rich Low_complexity Low_complexity 5 70 0 9 1489 21 36 0 0 chr4 118562665 118562693 -37067427 + AT_rich Low_complexity Low_complexity 1 28 0 9 1489 360 356 74 12 chr4 118563155 118563397 -37066723 + Lx7 LINE L1 7111 7367 -329 9 1489 207 0 0 0 chr4 118563413 118563436 -37066684 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1489 1141 137 16 32 chr4 118563535 118563724 -37066396 - B2_Mm2 SINE B2 -9 186 1 9 1489 232 376 12 51 chr4 118564594 118564849 -37065271 - L1M5 LINE L1 -1079 5067 4823 9 1489 528 236 11 6 chr4 118564908 118565087 -37065033 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1489 456 290 32 11 chr4 118565087 118565275 -37064845 - B4A SINE B4 0 292 101 1 1489 248 242 32 0 chr4 118565354 118565416 -37064704 - MIRm SINE MIR -116 160 97 1 1489 615 203 31 0 chr4 118565434 118565562 -37064558 - B3 SINE B2 -4 212 81 1 1489 270 0 0 0 chr4 118567006 118567036 -37063084 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1489 448 298 179 8 chr4 118567595 118567835 -37062285 + Lx8 LINE L1 7072 7352 -121 1 1489 319 338 13 20 chr4 118567878 118568029 -37062091 + MERVL-int LTR ERVL 3951 4100 -1385 1 1489 475 244 16 0 chr4 118568039 118568166 -37061954 + MTEb LTR MaLR 12 140 -239 1 1489 643 294 79 42 chr4 118568168 118568433 -37061687 - ORR1D2 LTR MaLR -82 277 3 1 1489 697 111 19 0 chr4 118568466 118568573 -37061547 - L1_Mur1 LINE L1 -544 5639 5505 1 1489 4865 193 58 20 chr4 118568582 118569590 -37060530 + ORR1B1-int LTR MaLR 278 1327 -182 1 1489 306 0 0 0 chr4 118569590 118569624 -37060496 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1489 4865 193 58 20 chr4 118569624 118569802 -37060318 + ORR1B1-int LTR MaLR 1328 1508 -1 1 1489 1428 197 137 14 chr4 118569802 118570075 -37060045 + ORR1B1 LTR MaLR 1 317 -77 1 1489 3189 56 5 5 chr4 118570075 118570471 -37059649 - MTA_Mm LTR MaLR 0 396 1 1 1489 1428 197 137 14 chr4 118570471 118570547 -37059573 + ORR1B1 LTR MaLR 318 393 -1 1 1489 200 304 0 0 chr4 118570553 118570609 -37059511 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 1 1489 2189 183 156 17 chr4 118570609 118571149 -37058971 - RMER19B LTR ERVK 0 902 288 1 1489 761 241 35 12 chr4 118571152 118571324 -37058796 - RLTR19-int LTR ERVK -1825 4312 4137 1 1489 1377 110 5 20 chr4 118571983 118572187 -37057933 + MusHAL1 LINE L1 928 1128 -1584 1 1489 505 257 174 49 chr4 118572187 118572514 -37057606 + RLTR9A LTR ERVK 1 368 0 1 1489 680 176 7 0 chr4 118572830 118572966 -37057154 + GA-rich Low_complexity Low_complexity 1 137 0 1 1489 3053 56 204 2 chr4 118572966 118573392 -37056728 + RLTR1B LTR ERV1 1 512 0 1 1489 9193 32 8 7 chr4 118573392 118574455 -37055665 + MMERGLN-int LTR ERV1 1 1064 -6492 1 1489 1047 59 0 0 chr4 118574475 118574610 -37055510 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 1 1489 717 88 0 0 chr4 118574612 118574714 -37055406 + (GGGA)n Simple_repeat Simple_repeat 4 105 0 1 1489 15128 153 73 36 chr4 118574874 118578354 -37051766 + RMER16-int LTR ERVK 1570 4146 -1260 1 1489 14200 141 19 36 chr4 118578354 118581442 -37048678 + Lx LINE L1 3502 6535 -119 1 1489 189 0 0 0 chr4 118581442 118581463 -37048657 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 1 1489 6118 123 39 101 chr4 118581463 118581577 -37048543 + Lx LINE L1 6536 6649 -5 1 1489 21 36 0 0 chr4 118581600 118581628 -37048492 + AT_rich Low_complexity Low_complexity 1 28 0 1 1489 1177 68 0 0 chr4 118582120 118582267 -37047853 + B1_Mus2 SINE Alu 1 147 0 1 1489 264 288 0 12 chr4 118583781 118583862 -37046258 - MTEb LTR MaLR -5 374 295 1 1489 1209 242 35 46 chr4 118583873 118584245 -37045875 + ORR1D1 LTR MaLR 7 374 0 1 1489 480 279 32 0 chr4 118584245 118584396 -37045724 - MTEb LTR MaLR -88 291 136 1 1489 655 265 19 0 chr4 118584396 118584558 -37045562 + ORR1D2 LTR MaLR 1 165 -205 1 1489 515 223 38 8 chr4 118584594 118584725 -37045395 - MTEb LTR MaLR -240 139 5 1 1489 355 322 28 0 chr4 118584731 118584874 -37045246 - ERVL-B4-int LTR ERVL -1619 4095 3949 1 1489 1311 298 104 12 chr4 118584991 118585579 -37044541 - Lx8 LINE L1 -113 7360 6719 1 1489 652 337 68 32 chr4 118585589 118585906 -37044214 - ERVL-B4-int LTR ERVL -1767 3947 3628 1 1489 3996 165 10 14 chr4 118585906 118586601 -37043519 - RLTR17 LTR ERVK 0 692 1 1 1489 652 337 68 32 chr4 118586601 118586838 -37043282 - ERVL-B4-int LTR ERVL -2087 3627 3373 1 1489 335 245 92 33 chr4 118586891 118587043 -37043077 + L1M4 LINE L1 4542 4702 -1444 1 1489 366 281 78 33 chr4 118587605 118587898 -37042222 + L1M4 LINE L1 4863 5199 -947 1 1489 245 264 67 33 chr4 118588159 118588249 -37041871 - LTR41B LTR ERVL -235 523 431 1 1489 371 208 195 38 chr4 118590155 118590318 -37039802 + B3 SINE B2 3 194 -22 1 1489 414 0 0 0 chr4 118590318 118590364 -37039756 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1489 371 208 195 38 chr4 118590364 118590385 -37039735 + B3 SINE B2 195 216 0 1 1489 289 244 46 0 chr4 118590390 118590490 -37039630 + MIRm SINE MIR 45 160 -116 1 1489 397 227 99 43 chr4 118590599 118590760 -37039360 + B4A SINE B4 123 292 0 1 1489 182 176 20 0 chr4 118590780 118590831 -37039289 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1489 273 368 19 62 chr4 118590874 118591196 -37038924 + L1M5 LINE L1 4781 5088 -1058 1 1489 3562 120 11 32 chr4 118591277 118591924 -37038196 + RMER17A2 LTR ERVK 3 635 -271 1 1489 240 310 88 20 chr4 118592391 118592493 -37037627 + ID_B1 SINE B4 91 199 -25 1 1489 620 274 82 21 chr4 118593545 118593739 -37036381 + B3 SINE B2 1 206 -10 1 1489 449 234 108 15 chr4 118594154 118594284 -37035836 + B1_Mus1 SINE Alu 5 146 -2 1 1489 296 235 154 17 chr4 118594557 118594674 -37035446 + MER63D DNA AcHobo 234 366 -695 1 1489 270 221 0 0 chr4 118594954 118595022 -37035098 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 1 1489 2105 178 101 101 chr4 118595221 118595854 -37034266 - RMER6C LTR ERVK -12 678 46 1 1489 1772 206 156 32 chr4 118596468 118596973 -37033147 + RLTR12A LTR ERVK 1 568 0 1 1489 835 298 74 30 chr4 118597101 118597562 -37032558 - ERVL-E-int LTR ERVL -1741 3926 3446 1 1489 198 275 0 0 chr4 118597690 118597770 -37032350 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1489 1772 215 31 3 chr4 118597777 118598159 -37031961 - ORR1B1 LTR MaLR -1 393 1 1 1489 6501 193 52 29 chr4 118598159 118599633 -37030487 - ORR1B1-int LTR MaLR 0 1509 1 1 1489 321 199 6 0 chr4 118599633 118599717 -37030403 - ORR1B1 LTR MaLR 0 394 309 1 1489 532 284 69 25 chr4 118599710 118599912 -37030208 - B3 SINE B2 0 216 6 1 1489 1093 214 98 15 chr4 118599918 118600184 -37029936 - ORR1B1 LTR MaLR -57 337 50 1 1489 2543 215 65 66 chr4 118600184 118600851 -37029269 + RMER19B LTR ERVK 1 666 -236 1 1489 956 187 57 72 chr4 118600856 118601207 -37028913 - RLTRETN_Mm LTR ERVK 0 409 9 1 1489 741 204 38 0 chr4 118601224 118601381 -37028739 + RMER19B LTR ERVK 726 888 -14 1 1489 2773 70 3 11 chr4 118601381 118601755 -37028365 + L1Md_F2 LINE L1 6212 6582 0 1 1489 195 42 0 0 chr4 118601810 118601834 -37028286 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1489 356 146 0 0 chr4 118601840 118601895 -37028225 - ORR1B1 LTR MaLR -339 55 1 1 1489 671 291 93 30 chr4 118601930 118602084 -37028036 + L1M4 LINE L1 4520 4678 -1468 1 1489 1448 231 66 11 chr4 118602084 118602448 -37027672 + ORR1C2 LTR MaLR 1 384 0 1 1489 671 291 93 30 chr4 118602448 118602757 -37027363 + L1M4 LINE L1 4679 5012 -1134 1 1489 581 259 111 6 chr4 118603185 118603356 -37026764 + RMER1C Other Other 491 679 -663 1 1489 1106 232 15 63 chr4 118603352 118603651 -37026469 + RMER1C Other Other 1022 1314 -28 1 1489 5043 118 29 86 chr4 118603651 118604607 -37025513 - RLTR13D6 LTR ERVK 0 902 1 1 1489 1106 232 15 63 chr4 118604607 118604642 -37025478 + RMER1C Other Other 1315 1340 -2 1 1489 543 241 22 7 chr4 118604763 118604901 -37025219 + B1_Mur1 SINE Alu 2 141 -8 1 1489 366 313 37 0 chr4 118604964 118605098 -37025022 + ID_B1 SINE B4 84 222 -2 1 1489 1831 146 9 9 chr4 118605873 118606192 -37023928 + ORR1A2 LTR MaLR 1 319 -8 1 1489 380 244 206 22 chr4 118607530 118607710 -37022410 + B3 SINE B2 3 215 -1 1 1489 195 281 44 11 chr4 118607779 118607869 -37022251 + MIR SINE MIR 96 188 -74 1 1489 510 294 16 21 chr4 118607926 118608117 -37022003 + B4A SINE B4 103 292 0 1 1489 231 103 0 0 chr4 118608132 118608171 -37021949 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 1489 396 0 0 0 chr4 118609243 118609287 -37020833 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1489 862 153 15 0 chr4 118609287 118609424 -37020696 - B1_Mur4 SINE Alu -11 139 1 1 1489 564 311 51 30 chr4 118609561 118609796 -37020324 - Lx7 LINE L1 -329 7367 7128 1 1489 231 321 206 14 chr4 118610387 118610605 -37019515 - MIR SINE MIR 0 262 3 1 1489 542 281 81 48 chr4 118611683 118611892 -37018228 + B3 SINE B2 1 216 0 1 1489 242 252 91 0 chr4 118612245 118612344 -37017776 + MER63B DNA AcHobo 44 151 -285 1 1489 555 285 78 43 chr4 118612431 118612713 -37017407 + MER63B DNA AcHobo 145 436 0 1 1489 290 323 43 10 chr4 118613186 118613311 -37016809 - MIR SINE MIR -112 164 30 1 1489 203 364 0 0 chr4 118613787 118613864 -37016256 - MIRb SINE MIR -58 210 134 1 1489 1571 0 6 0 chr4 118614359 118614538 -37015582 - MTA_Mm LTR MaLR 0 396 217 1 1489 21 0 0 0 chr4 118614538 118614559 -37015561 + AT_rich Low_complexity Low_complexity 1 21 0 1 1489 1918 18 4 0 chr4 118616055 118616282 -37013838 - MTA_Mm LTR MaLR -168 228 1 1 1489 195 312 50 0 chr4 118616349 118616429 -37013691 - MIR SINE MIR -56 206 123 1 1489 968 182 134 59 chr4 118616491 118616730 -37013390 + Lx4A LINE L1 6802 7058 0 1 1489 283 85 0 0 chr4 118616879 118616926 -37013194 + Lx2 LINE L1 6949 6995 -2 1 1489 261 318 35 12 chr4 118617219 118617305 -37012815 + MTE2a LTR MaLR 240 327 -52 1 1489 964 313 17 45 chr4 118617360 118617822 -37012298 + L1VL4 LINE L1 509 957 -5700 1 1489 192 77 0 0 chr4 118618174 118618200 -37011920 + (A)n Simple_repeat Simple_repeat 1 26 0 1 186 28927 119 8 9 chr4 118618200 118623018 -37007102 + L1VL4 LINE L1 940 5753 -130 1 1490 262 266 16 0 chr4 118623020 118623084 -37007036 + ID_B1 SINE B4 122 186 -38 1 1490 6161 89 25 1 chr4 118623179 118624015 -37006105 + L1_Mus3 LINE L1 5775 6630 -8 1 1490 807 66 0 0 chr4 118624015 118624121 -37005999 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1 1490 445 317 21 21 chr4 118624140 118624285 -37005835 + B1F2 SINE Alu 4 148 -1 1 1490 322 247 41 82 chr4 118624331 118624453 -37005667 + ID_B1 SINE B4 71 186 -38 1 1490 299 304 36 85 chr4 118625178 118625401 -37004719 + L1M5 LINE L1 4783 4994 -1152 1 1490 180 77 0 0 chr4 118625428 118625454 -37004666 + (ATG)n Simple_repeat Simple_repeat 3 28 0 1 1490 374 37 0 53 chr4 118625452 118625509 -37004611 + (GGAGAA)n Simple_repeat Simple_repeat 4 57 0 1 1490 1162 80 0 9 chr4 118625509 118625737 -37004383 + (GAA)n Simple_repeat Simple_repeat 1 225 0 1 1490 771 102 0 0 chr4 118625818 118625926 -37004194 + B1_Mur4 SINE Alu 31 138 -12 1 1490 572 174 382 0 chr4 118625944 118626088 -37004032 + B3 SINE B2 3 201 -15 1 1490 1114 7 15 0 chr4 118626091 118626226 -37003894 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 1 1490 204 288 79 36 chr4 118626888 118627027 -37003093 - MIR3 SINE MIR -102 160 15 1 1490 216 164 36 18 chr4 118628753 118628809 -37001311 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 1 1490 672 176 0 18 chr4 118628816 118628926 -37001194 + B1F2 SINE Alu 28 135 -14 1 1490 23 0 0 0 chr4 118628959 118628982 -37001138 + AT_rich Low_complexity Low_complexity 1 23 0 1 1490 8608 123 27 138 chr4 118629059 118629334 -37000786 - RLTR21 LTR ERVK 0 1572 1307 2 1490 279 0 0 0 chr4 118629334 118629365 -37000755 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1490 8608 123 27 138 chr4 118629365 118630846 -36999274 - RLTR21 LTR ERVK -266 1306 12 2 1490 235 356 0 0 chr4 118630873 118630946 -36999174 + MER63D DNA AcHobo 294 366 -695 2 1490 277 250 42 0 chr4 118630961 118631033 -36999087 + GA-rich Low_complexity Low_complexity 3 77 0 2 1490 382 180 152 33 chr4 118631095 118631187 -36998933 - B1_Mur2 SINE Alu -5 144 42 2 1490 267 267 33 0 chr4 118631224 118631284 -36998836 - MIR SINE MIR -57 151 90 2 1490 188 368 85 0 chr4 118631379 118631485 -36998635 - MIRb SINE MIR -117 151 37 2 1490 1608 206 50 42 chr4 118631647 118632047 -36998073 + Lx6 LINE L1 7054 7456 -4 2 1490 384 280 42 70 chr4 118632179 118632281 -36997839 + MER44B DNA MER2_type 2 102 -448 2 1490 1330 154 42 245 chr4 118632281 118632762 -36997358 - ORR1C2 LTR MaLR 0 384 2 2 1490 899 258 129 185 chr4 118632762 118633092 -36997028 + MER44B DNA MER2_type 103 379 -171 2 1490 808 160 97 6 chr4 118633092 118633268 -36996852 - B2_Mm2 SINE B2 -3 192 1 2 1490 899 256 139 157 chr4 118633268 118633401 -36996719 + MER44B DNA MER2_type 380 543 -7 2 1490 1416 64 37 0 chr4 118633517 118633704 -36996416 + B2_Mm2 SINE B2 1 194 -1 2 1490 207 0 0 0 chr4 118635899 118635922 -36994198 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1490 22 0 0 0 chr4 118637447 118637469 -36992651 + AT_rich Low_complexity Low_complexity 1 22 0 2 1490 188 298 198 23 chr4 118638073 118638159 -36991961 - MIRc SINE MIR -145 123 23 2 1490 279 315 0 0 chr4 118638357 118638519 -36991601 + (TG)n Simple_repeat Simple_repeat 1 162 0 2 1490 211 354 0 12 chr4 118638544 118638627 -36991493 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 2 1490 231 278 19 0 chr4 118638545 118638599 -36991521 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1490 876 240 19 44 chr4 118638630 118638835 -36991285 - B4A SINE B4 -18 274 75 2 1490 941 154 0 20 chr4 118638859 118639011 -36991109 - B1_Mur4 SINE Alu -1 149 1 2 1490 890 174 12 27 chr4 118639017 118639214 -36990906 - B3 SINE B2 -7 188 1 2 1490 257 333 24 0 chr4 118639214 118639293 -36990827 - B4 SINE B4 -194 98 18 2 1490 770 157 6 0 chr4 118642070 118642229 -36987891 + (TG)n Simple_repeat Simple_repeat 1 160 0 2 1490 291 299 62 43 chr4 118643053 118643214 -36986906 - RLTR14-int LTR ERV1 -667 4650 4487 2 1490 737 82 0 0 chr4 118643224 118643321 -36986799 + B1_Mus2 SINE Alu 51 147 0 2 1490 213 39 0 0 chr4 118643321 118643347 -36986773 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1490 279 0 0 0 chr4 118643592 118643623 -36986497 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1490 2146 173 111 27 chr4 118644229 118644455 -36985665 - RLTR11A LTR ERVK 0 528 296 2 1490 1497 64 5 0 chr4 118644455 118644643 -36985477 - B2_Mm1a SINE B2 -4 189 1 2 1490 2146 173 111 27 chr4 118644643 118644903 -36985217 - RLTR11A LTR ERVK -233 295 1 2 1490 2268 138 46 3 chr4 118645209 118645579 -36984541 + ORR1B1 LTR MaLR 1 386 -8 2 1490 662 315 71 51 chr4 118645608 118646130 -36983990 - RLTR14-int LTR ERV1 -1920 3397 2935 2 1490 681 317 61 5 chr4 118646319 118646623 -36983497 - MURVY-int LTR ERV1 -3169 4432 4048 2 1490 1189 82 0 0 chr4 118646867 118647013 -36983107 - B1_Mm SINE Alu 0 147 2 2 1490 281 341 89 0 chr4 118647066 118647189 -36982931 - MURVY-int LTR ERV1 -3671 3885 3752 2 1490 989 139 12 25 chr4 118647387 118647549 -36982571 + B2_Mm2 SINE B2 2 161 -34 2 1490 546 16 0 0 chr4 118647550 118647613 -36982507 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2 1490 501 181 50 86 chr4 118648346 118648485 -36981635 - RLTR14-int LTR ERV1 -4733 584 451 2 1490 696 224 18 101 chr4 118648588 118648816 -36981304 - RLTR14 LTR ERV1 -171 211 3 2 1490 1301 198 91 91 chr4 118649848 118650232 -36979888 + ORR1C2 LTR MaLR 1 384 0 2 1490 272 246 10 56 chr4 118650284 118650384 -36979736 - MTEb LTR MaLR -7 372 278 2 1490 196 385 15 0 chr4 118651013 118651078 -36979042 - MIRb SINE MIR -199 69 4 2 1490 539 155 10 0 chr4 118651118 118651221 -36978899 + GA-rich Low_complexity Low_complexity 4 107 0 2 1490 1133 114 6 0 chr4 118651227 118651393 -36978727 + B2_Mm1a SINE B2 1 167 -26 2 1490 389 297 9 0 chr4 118651452 118651563 -36978557 - PB1D9 SINE Alu -7 113 2 2 1490 1675 189 100 3 chr4 118652268 118652447 -36977673 - ORR1C2 LTR MaLR 0 384 172 2 1490 360 0 0 0 chr4 118652447 118652487 -36977633 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1490 1675 189 100 3 chr4 118652487 118652657 -36977463 - ORR1C2 LTR MaLR -213 171 1 2 1490 330 232 119 24 chr4 118652785 118652869 -36977251 + MT2B LTR ERVL 166 257 -344 2 1490 733 125 18 0 chr4 118652801 118652913 -36977207 + B1_Mur3 SINE Alu 35 148 -1 2 1490 1044 273 42 65 chr4 118653265 118653668 -36976452 + RLTR26 LTR ERVK 22 415 -227 2 1490 1595 251 56 44 chr4 118653848 118654799 -36975321 + RMER1B Other Other 1 522 -544 2 1490 4220 226 74 28 chr4 118654850 118655704 -36974416 + RMER1A Other Other 1 856 -174 2 1490 438 20 0 0 chr4 118655704 118655755 -36974365 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1490 4220 226 74 28 chr4 118655755 118655883 -36974237 + RMER1A Other Other 857 1028 -2 2 1490 195 129 0 0 chr4 118655919 118655950 -36974170 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1490 24 0 0 0 chr4 118655952 118655976 -36974144 + AT_rich Low_complexity Low_complexity 1 24 0 2 1490 23 33 0 0 chr4 118656158 118656188 -36973932 + AT_rich Low_complexity Low_complexity 1 30 0 2 1490 553 205 65 8 chr4 118656212 118656335 -36973785 - B1_Mur2 SINE Alu -16 133 4 2 1490 833 187 182 27 chr4 118656339 118656526 -36973594 - B3 SINE B2 0 216 1 2 1490 396 294 43 43 chr4 118656925 118657135 -36972985 + B4A SINE B4 1 210 -82 2 1490 762 201 60 16 chr4 118657162 118657352 -36972768 + L1M3 LINE L1 3951 4151 -1989 2 1490 240 35 0 0 chr4 118657360 118657389 -36972731 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1490 969 72 61 61 chr4 118657389 118657536 -36972584 - B1_Mus2 SINE Alu 0 147 1 2 1490 1503 62 0 20 chr4 118657550 118657747 -36972373 - B2_Mm1a SINE B2 0 193 1 2 1490 2420 100 50 55 chr4 118657756 118658136 -36971984 - ORR1C1 LTR MaLR 0 378 1 2 1490 251 246 340 0 chr4 118658190 118658293 -36971827 + B3A SINE B2 3 140 -58 2 1490 867 316 117 18 chr4 118658293 118658918 -36971202 + L1M3 LINE L1 4574 5260 -880 2 1490 634 229 23 0 chr4 118658925 118659056 -36971064 + RSINE1 SINE B4 3 136 -29 2 1490 1092 174 56 0 chr4 118659233 118659428 -36970692 + B3 SINE B2 5 210 -6 2 1490 1151 102 11 0 chr4 118660843 118661019 -36969101 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1490 525 174 57 2 chr4 118661048 118661165 -36968955 + B1_Mus2 SINE Alu 11 149 0 2 1490 703 270 81 0 chr4 118661487 118661672 -36968448 + ID_B1 SINE B4 2 201 -23 2 1490 2010 116 9 51 chr4 118661857 118662193 -36967927 - RLTRETN_Mm LTR ERVK 0 322 1 2 1490 667 145 116 83 chr4 118662264 118662445 -36967675 - B2_Mm2 SINE B2 -8 187 1 2 1490 8046 48 20 2 chr4 118662654 118663938 -36966182 - L1Md_F2 LINE L1 -12 6570 5269 2 1490 276 193 24 114 chr4 118663988 118664111 -36966009 - L1MD LINE L1 -985 5161 5050 2 1490 503 241 9 9 chr4 118664133 118664242 -36965878 + PB1D10 SINE Alu 7 115 -2 2 1490 463 274 0 0 chr4 118664244 118664346 -36965774 + B1_Mus2 SINE Alu 1 102 -45 2 1490 297 0 0 0 chr4 118664352 118664385 -36965735 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1490 800 164 0 0 chr4 118664386 118664514 -36965606 - B1_Mur2 SINE Alu -15 134 7 2 1490 409 241 44 44 chr4 118664415 118664528 -36965592 - B4A SINE B4 -98 194 82 2 1490 241 344 88 47 chr4 118664886 118665057 -36965063 + MLT1J LTR MaLR 335 512 0 2 1490 397 0 38 0 chr4 118665389 118665442 -36964678 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1490 306 0 0 0 chr4 118665660 118665694 -36964426 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1490 762 163 45 9 chr4 118665694 118665847 -36964273 - B2_Mm2 SINE B2 0 195 36 2 1490 511 279 56 47 chr4 118666053 118666286 -36963834 + L1_Rod LINE L1 4704 4938 -909 2 1490 1515 202 123 6 chr4 118666292 118666626 -36963494 + MTD LTR MaLR 3 375 -44 2 1490 1739 21 0 0 chr4 118666644 118666837 -36963283 - B2_Mm1a SINE B2 0 193 1 2 1490 2882 88 96 0 chr4 118666895 118667303 -36962817 - RLTR44B LTR ERVK -2 447 1 2 1490 5474 46 0 0 chr4 118667303 118667971 -36962149 - RLTR44-int LTR ERVK 0 2812 2145 2 1490 5512 128 4 21 chr4 118668044 118669018 -36961102 - RLTR44-int LTR ERVK -1323 1489 662 2 1490 745 126 41 27 chr4 118669536 118669683 -36960437 - RLTR44-int LTR ERVK -2509 303 155 2 1490 2733 78 131 2 chr4 118669713 118670111 -36960009 - RLTR44B LTR ERVK 0 449 1 2 1490 432 195 33 234 chr4 118670133 118670347 -36959773 + B3 SINE B2 25 216 0 2 1490 674 297 105 37 chr4 118670347 118670643 -36959477 + L1MA4A LINE L1 5490 5819 -484 2 1490 995 209 69 10 chr4 118670643 118670846 -36959274 + B3 SINE B2 2 216 0 2 1490 674 297 105 37 chr4 118670846 118670902 -36959218 + L1MA4A LINE L1 5820 5866 -437 2 1490 439 314 25 0 chr4 118670929 118671050 -36959070 - RSINE1 SINE B4 -41 124 1 2 1490 421 295 23 45 chr4 118671159 118671379 -36958741 + L1M5 LINE L1 4454 4668 -1478 2 1490 1495 256 89 19 chr4 118671382 118671855 -36958265 + RMER5 LTR ERV1 13 518 -16 2 1490 1056 183 91 0 chr4 118671919 118672116 -36958004 + B3 SINE B2 2 216 0 2 1490 256 207 264 0 chr4 118672524 118672611 -36957509 + PB1D9 SINE Alu 11 120 0 2 1490 403 219 107 87 chr4 118673033 118673140 -36956980 + RSINE1 SINE B4 3 124 -41 2 1490 225 0 0 0 chr4 118673140 118673165 -36956955 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1490 403 219 107 87 chr4 118673165 118673207 -36956913 + RSINE1 SINE B4 125 155 -10 2 1490 26 0 0 0 chr4 118673210 118673236 -36956884 + AT_rich Low_complexity Low_complexity 1 26 0 2 1490 1374 162 47 89 chr4 118673418 118673756 -36956364 - Lx5 LINE L1 0 7050 6727 2 1490 618 14 0 0 chr4 118673833 118673904 -36956216 + (GTTTG)n Simple_repeat Simple_repeat 2 72 0 2 1490 950 149 0 0 chr4 118673907 118674041 -36956079 - B1_Mur3 SINE Alu -15 134 1 2 1490 207 336 33 59 chr4 118674183 118674335 -36955785 - L2c LINE L2 -303 3084 2937 2 1490 327 263 237 35 chr4 118674404 118674577 -36955543 - L1MEc LINE L1 -5917 483 276 2 1490 389 318 47 0 chr4 118675188 118675295 -36954825 - PB1D10 SINE Alu -3 114 3 2 1490 689 203 80 0 chr4 118675556 118675694 -36954426 + B1_Mur2 SINE Alu 1 149 0 2 1490 822 162 35 84 chr4 118675696 118675898 -36954222 + B2_Mm2 SINE B2 3 194 -1 3 1490 567 258 45 30 chr4 118676230 118676362 -36953758 - RSINE1 SINE B4 -21 144 11 3 1490 524 189 101 69 chr4 118677305 118677464 -36952656 + RSINE1 SINE B4 2 165 0 3 1490 284 250 73 83 chr4 118678024 118678120 -36952000 - MIRc SINE MIR -64 204 110 3 1490 339 189 211 0 chr4 118678457 118678547 -36951573 + PB1D10 SINE Alu 3 111 -6 3 1490 853 181 0 20 chr4 118678559 118678711 -36951409 + B1_Mur4 SINE Alu 2 150 0 3 1490 399 224 87 70 chr4 118678728 118678843 -36951277 + B3A SINE B2 8 124 -71 3 1490 291 71 0 0 chr4 118678957 118678999 -36951121 + (TATG)n Simple_repeat Simple_repeat 1 42 0 3 1490 198 312 73 8 chr4 118679013 118679109 -36951011 + MIRm SINE MIR 77 177 -91 3 1490 688 218 0 8 chr4 118679351 118679485 -36950635 - B1_Mur1 SINE Alu -15 134 2 3 1490 384 22 0 0 chr4 118679984 118680029 -36950091 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 3 1490 728 282 47 24 chr4 118680067 118680278 -36949842 - B3 SINE B2 0 216 1 3 1490 490 248 35 49 chr4 118680316 118680460 -36949660 - ID_B1 SINE B4 -8 216 75 3 1490 185 367 0 27 chr4 118681072 118681184 -36948936 - MIR3 SINE MIR -3 205 97 3 1490 189 319 0 28 chr4 118682209 118682280 -36947840 + MIRb SINE MIR 107 175 -93 3 1490 286 294 231 0 chr4 118684418 118684561 -36945559 - MIRb SINE MIR -30 238 63 3 1490 733 21 21 0 chr4 118685187 118685282 -36944838 + (TTC)n Simple_repeat Simple_repeat 3 99 0 3 1490 1187 50 0 0 chr4 118685284 118685425 -36944695 - B1_Mus2 SINE Alu -6 141 1 3 1490 823 224 0 0 chr4 118685434 118685577 -36944543 - B1_Mur2 SINE Alu -6 143 1 3 1490 1393 149 13 13 chr4 118686552 118686777 -36943343 - URR1B DNA MER1_type 0 225 1 3 1490 244 290 60 62 chr4 118687327 118687470 -36942650 + MIRm SINE MIR 17 157 -51 3 1490 474 33 0 0 chr4 118687989 118688049 -36942071 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1490 298 254 33 29 chr4 118688059 118688302 -36941818 + RMER17D LTR ERVK 285 528 -361 3 1490 1454 66 0 5 chr4 118688643 118688827 -36941293 + B2_Mm2 SINE B2 5 187 -8 3 1490 425 227 0 0 chr4 118688851 118688926 -36941194 + ID_B1 SINE B4 117 191 -33 3 1490 648 283 75 21 chr4 118688986 118689174 -36940946 + B4A SINE B4 95 292 0 3 1490 777 76 0 0 chr4 118689175 118689280 -36940840 + (TC)n Simple_repeat Simple_repeat 1 105 0 3 1490 297 0 0 0 chr4 118689280 118689312 -36940808 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1490 1128 184 48 0 chr4 118690176 118690382 -36939738 - B3 SINE B2 0 216 1 3 1490 408 169 0 0 chr4 118690383 118690460 -36939660 + (TCG)n Simple_repeat Simple_repeat 3 79 0 3 1490 328 263 15 139 chr4 118690462 118690474 -36939646 - PB1D9 SINE Alu 0 120 110 3 1490 180 0 0 0 chr4 118690474 118690494 -36939626 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1490 411 171 178 110 chr4 118690494 118690612 -36939508 - ID_B1 SINE B4 -11 213 88 3 1490 214 289 35 46 chr4 118691569 118691656 -36938464 - MIRc SINE MIR -117 151 66 3 1490 444 171 0 0 chr4 118692682 118692793 -36937327 + T-rich Low_complexity Low_complexity 1 111 0 3 1490 1234 48 7 0 chr4 118692801 118692947 -36937173 - B1_Mus1 SINE Alu -1 147 1 3 1490 282 286 108 54 chr4 118692951 118693099 -36937021 - MLT1A1 LTR MaLR -8 400 245 3 1490 277 316 29 48 chr4 118693123 118693140 -36936980 - B1F SINE Alu -11 138 38 3 1490 322 277 0 35 chr4 118693140 118693226 -36936894 - ID_B1 SINE B4 -23 201 119 3 1490 193 256 139 47 chr4 118694209 118694295 -36935825 + MIR SINE MIR 21 114 -94 3 1490 219 327 0 0 chr4 118694908 118694960 -36935160 + (CG)n Simple_repeat Simple_repeat 2 53 0 3 1490 330 150 0 77 chr4 118695288 118695353 -36934767 - HAL1-3A_ME LINE L1 -823 2035 1976 3 1490 234 156 0 0 chr4 118695371 118695416 -36934704 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1490 472 148 47 17 chr4 118695437 118695609 -36934511 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1490 426 131 54 27 chr4 118695680 118695829 -36934291 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1490 189 243 143 0 chr4 118695946 118696016 -36934104 - MIRm SINE MIR -79 197 118 3 1490 924 88 7 49 chr4 118696412 118696555 -36933565 + B1_Mm SINE Alu 2 138 -9 3 1490 189 74 0 0 chr4 118696555 118696582 -36933538 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 1490 741 268 9 32 chr4 118697230 118697450 -36932670 + B3 SINE B2 1 215 -1 3 1490 252 0 0 0 chr4 118697459 118697487 -36932633 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1490 739 212 34 5 chr4 118697488 118697665 -36932455 + B3A SINE B2 2 196 -20 3 1490 270 246 0 16 chr4 118697694 118697756 -36932364 + ID4 SINE ID 12 72 -11 3 1490 230 292 14 14 chr4 118697756 118697767 -36932353 + ID SINE ID 12 84 -140 3 1490 339 261 151 27 chr4 118698581 118698727 -36931393 + MER5A1 DNA MER1_type 3 166 0 3 1490 315 0 0 0 chr4 118699871 118699906 -36930214 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1490 216 183 200 22 chr4 118700054 118700129 -36929991 - PB1D7 SINE Alu -43 84 3 3 1490 183 80 0 0 chr4 118700302 118700327 -36929793 + (GAATG)n Simple_repeat Simple_repeat 1 25 0 3 1490 1541 59 16 0 chr4 118700370 118700557 -36929563 - B2_Mm2 SINE B2 -5 190 1 3 1490 310 279 128 7 chr4 118700671 118700819 -36929301 - MIR SINE MIR -81 181 16 3 1490 490 158 39 25 chr4 118701880 118701993 -36928127 + B1_Mur3 SINE Alu 1 149 0 3 1490 185 196 22 0 chr4 118702008 118702054 -36928066 + GA-rich Low_complexity Low_complexity 1 47 0 3 1490 229 159 45 0 chr4 118702072 118702116 -36928004 - PB1D10 SINE Alu -37 80 35 3 1490 447 311 0 0 chr4 118703219 118703325 -36926795 + B1_Mur3 SINE Alu 42 147 -2 3 1490 210 204 41 0 chr4 118703366 118703415 -36926705 + (CAGAGA)n Simple_repeat Simple_repeat 5 55 0 3 1490 280 259 108 108 chr4 118703741 118703953 -36926167 - RMER21A LTR ERV1 -127 820 609 3 1490 270 315 75 18 chr4 118704307 118704518 -36925602 + MIR SINE MIR 32 260 -16 3 1490 189 0 0 0 chr4 118704579 118704600 -36925520 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1490 228 135 0 0 chr4 118705575 118705612 -36924508 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1490 471 261 34 17 chr4 118705794 118705911 -36924209 - B4A SINE B4 -173 119 1 3 1490 228 82 245 0 chr4 118706026 118706075 -36924045 - B1_Mur2 SINE Alu -55 94 34 3 1490 1264 276 40 43 chr4 118706595 118706969 -36923151 + MTEa LTR MaLR 1 373 -6 3 1490 660 346 52 39 chr4 118707223 118707608 -36922512 - HERV16-int LTR ERVL -1978 3018 2629 3 1490 466 284 103 0 chr4 118708015 118708131 -36921989 + RSINE1 SINE B4 2 129 -36 3 1490 22 0 0 0 chr4 118708174 118708196 -36921924 + AT_rich Low_complexity Low_complexity 1 22 0 3 1490 340 309 27 0 chr4 118708737 118708847 -36921273 - PB1D10 SINE Alu -2 115 3 3 1490 505 333 83 29 chr4 118708930 118709242 -36920878 - HERV16-int LTR ERVL -3663 1333 1005 3 1490 25 0 0 0 chr4 118710062 118710087 -36920033 + AT_rich Low_complexity Low_complexity 1 25 0 3 1490 611 309 132 5 chr4 118710248 118710437 -36919683 + ID_B1 SINE B4 1 213 -11 3 1490 298 394 9 9 chr4 118710544 118710649 -36919471 - LTR16B1 LTR ERVL -262 218 114 3 1490 931 294 85 33 chr4 118710696 118711086 -36919034 + MLT1C LTR MaLR 12 421 -46 3 1490 224 321 79 21 chr4 118711231 118711371 -36918749 - MIRb SINE MIR -108 160 13 3 1490 317 189 0 11 chr4 118711493 118711546 -36918574 + polypurine Low_complexity Low_complexity 1 53 0 3 1490 327 25 0 0 chr4 118711546 118711586 -36918534 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1490 317 189 0 11 chr4 118711586 118711623 -36918497 + polypurine Low_complexity Low_complexity 54 90 0 3 1490 351 149 0 0 chr4 118711668 118711742 -36918378 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1490 380 154 0 15 chr4 118711760 118711826 -36918294 + B3 SINE B2 146 210 -6 3 1490 295 281 11 0 chr4 118711869 118711958 -36918162 + LTR37A LTR ERV1 81 170 -256 3 1490 959 145 0 14 chr4 118711959 118712099 -36918021 + B1_Mur4 SINE Alu 2 139 -11 3 1490 218 32 32 0 chr4 118712099 118712130 -36917990 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1490 195 42 0 0 chr4 118712160 118712184 -36917936 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1490 428 225 152 48 chr4 118712190 118712335 -36917785 - B3A SINE B2 -38 160 1 3 1490 21 36 0 0 chr4 118713362 118713390 -36916730 + AT_rich Low_complexity Low_complexity 1 28 0 3 1490 2898 18 36 3 chr4 118713391 118713726 -36916394 - ORR1A0 LTR MaLR 0 346 1 3 1490 523 207 0 0 chr4 118713775 118713862 -36916258 + 4.5SRNA scRNA scRNA 2 88 -6 3 1490 344 158 49 2 chr4 118713812 118713884 -36916236 + B1F2 SINE Alu 41 114 -35 3 1490 180 0 0 0 chr4 118713884 118713904 -36916216 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 3 1490 292 212 37 92 chr4 118713904 118713940 -36916180 + B1_Mur3 SINE Alu 115 143 -6 3 1490 802 198 181 0 chr4 118714558 118714740 -36915380 + B3 SINE B2 2 216 0 3 1490 1226 85 90 0 chr4 118715278 118715455 -36914665 + B2_Mm2 SINE B2 1 193 -2 3 1490 222 37 0 0 chr4 118715455 118715482 -36914638 + (GGAAA)n Simple_repeat Simple_repeat 3 29 0 3 1490 569 262 0 60 chr4 118715556 118715706 -36914414 - ID_B1 SINE B4 -2 222 82 3 1490 873 171 184 22 chr4 118715754 118715939 -36914181 - B3 SINE B2 0 216 2 3 1490 284 297 27 0 chr4 118716023 118716097 -36914023 + MADE2 DNA Mariner 1 76 -4 4 1490 230 0 33 0 chr4 118716107 118716137 -36913983 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1490 296 175 46 31 chr4 118716158 118716223 -36913897 - MLT2C2 LTR ERVL -297 167 102 4 1490 480 272 9 38 chr4 118717403 118717508 -36912612 + PB1D10 SINE Alu 4 109 -8 4 1490 252 263 0 0 chr4 118717525 118717601 -36912519 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1490 312 279 35 11 chr4 118718180 118718267 -36911853 + MIRb SINE MIR 103 191 -77 4 1490 186 143 0 0 chr4 118718721 118718749 -36911371 + MIRm SINE MIR 95 122 -154 4 1490 797 208 43 21 chr4 118718959 118719146 -36910974 + B3A SINE B2 1 191 -7 4 1490 928 197 60 65 chr4 118719180 118719397 -36910723 + B3 SINE B2 1 216 0 4 1490 617 201 5 27 chr4 118719744 118719928 -36910192 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1490 451 190 28 7 chr4 118719960 118720103 -36910017 + (CA)n Simple_repeat Simple_repeat 1 146 0 4 1490 427 205 40 24 chr4 118720108 118720233 -36909887 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 4 1490 478 211 7 33 chr4 118720237 118720520 -36909600 + (CA)n Simple_repeat Simple_repeat 1 275 0 4 1490 666 180 0 10 chr4 118720609 118720743 -36909377 - B1_Mur4 SINE Alu -18 131 5 4 1490 199 204 111 0 chr4 118720950 118721004 -36909116 - L2c LINE L2 -192 3195 3136 4 1490 514 282 7 14 chr4 118721149 118721293 -36908827 + B1_Mur1 SINE Alu 7 149 0 4 1490 335 7 0 157 chr4 118721366 118721538 -36908582 + (CAGAG)n Simple_repeat Simple_repeat 1 145 0 4 1490 512 101 191 0 chr4 118721541 118721630 -36908490 + B1_Mus2 SINE Alu 42 147 0 4 1490 285 98 0 0 chr4 118721633 118721674 -36908446 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1490 183 152 50 17 chr4 118721665 118721725 -36908395 + GA-rich Low_complexity Low_complexity 4 65 0 4 1490 271 314 25 63 chr4 118721757 118721886 -36908234 + MIR SINE MIR 63 188 -20 4 1490 925 227 39 5 chr4 118722096 118722304 -36907816 - B3 SINE B2 -1 215 1 4 1490 322 255 17 121 chr4 118722378 118722397 -36907723 + ID_B1 SINE B4 117 219 -4 4 1490 650 109 3 0 chr4 118722397 118722493 -36907627 + B1_Mus2 SINE Alu 47 144 -5 4 1490 1414 171 82 40 chr4 118722548 118722902 -36907218 - Lx5 LINE L1 -7 7043 6675 4 1490 927 170 0 33 chr4 118722962 118723114 -36907006 - B1_Mur1 SINE Alu -2 147 1 4 1490 259 276 63 17 chr4 118723571 118723696 -36906424 - MIR SINE MIR -100 176 42 4 1490 303 301 99 31 chr4 118723833 118723994 -36906126 - MIRb SINE MIR -96 172 1 4 1490 654 222 22 7 chr4 118724082 118724218 -36905902 - B1_Mur1 SINE Alu -1 148 11 4 1490 1247 61 0 0 chr4 118724320 118724468 -36905652 + B1_Mus1 SINE Alu 1 148 0 4 1490 267 136 0 0 chr4 118724468 118724527 -36905593 + (A)n Simple_repeat Simple_repeat 1 59 0 4 1490 216 0 0 0 chr4 118724612 118724636 -36905484 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1490 522 0 0 0 chr4 118724730 118724788 -36905332 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1490 205 167 0 36 chr4 118725117 118725173 -36904947 + GA-rich Low_complexity Low_complexity 1 54 0 4 1490 657 241 0 28 chr4 118725178 118725323 -36904797 + B1F2 SINE Alu 2 142 -7 4 1490 233 328 24 49 chr4 118725400 118725493 -36904627 - ID2 SINE ID -57 95 5 4 1490 1017 24 0 8 chr4 118725610 118725734 -36904386 + B1_Mm SINE Alu 23 145 -2 4 1490 470 239 53 23 chr4 118725751 118725884 -36904236 - MLT1A LTR MaLR -230 144 8 4 1490 250 368 51 26 chr4 118726116 118726233 -36903887 + MIRb SINE MIR 77 196 -72 4 1490 711 190 14 21 chr4 118727231 118727371 -36902749 - B1F SINE Alu -10 139 1 4 1490 653 174 62 48 chr4 118727662 118727807 -36902313 - B1_Mur1 SINE Alu -2 147 1 4 1490 958 190 119 59 chr4 118728464 118728750 -36901370 + RMER4B LTR ERVK 1 303 -282 4 1490 233 290 29 14 chr4 118728971 118729041 -36901079 + L2b LINE L2 3086 3156 -219 4 1490 395 297 103 56 chr4 118729212 118729426 -36900694 + ID_B1 SINE B4 1 224 0 4 1490 820 183 14 14 chr4 118730161 118730305 -36899815 + B1_Mur4 SINE Alu 5 148 -2 4 1490 721 203 80 0 chr4 118730328 118730466 -36899654 + B1_Mur3 SINE Alu 1 149 0 4 1490 884 257 25 14 chr4 118731243 118731461 -36898659 - ID_B1 SINE B4 -47 245 15 4 1490 270 264 0 100 chr4 118731392 118731472 -36898648 - ID4 SINE ID -2 81 10 4 1490 25 31 0 0 chr4 118731592 118731624 -36898496 + AT_rich Low_complexity Low_complexity 1 32 0 4 1490 265 382 39 0 chr4 118731785 118731887 -36898233 - L2c LINE L2 -11 3376 3271 4 1490 286 237 87 57 chr4 118732099 118732205 -36897915 + PB1D7 SINE Alu 8 120 0 4 1490 476 281 14 7 chr4 118732226 118732366 -36897754 + ID_B1 SINE B4 82 222 -2 4 1490 372 287 69 8 chr4 118732615 118732745 -36897375 + MIR SINE MIR 67 204 -58 4 1490 263 366 0 12 chr4 118732786 118732869 -36897251 + PB1D10 SINE Alu 3 84 -33 4 1490 591 71 31 0 chr4 118732881 118732979 -36897141 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 4 1490 299 263 208 10 chr4 118733113 118733209 -36896911 + RSINE1 SINE B4 13 127 -38 4 1490 25 31 0 0 chr4 118733228 118733260 -36896860 + AT_rich Low_complexity Low_complexity 1 32 0 4 1490 1038 293 11 19 chr4 118733307 118733578 -36896542 + B4A SINE B4 24 292 0 4 1490 491 361 0 0 chr4 118733580 118733746 -36896374 + (CA)n Simple_repeat Simple_repeat 1 166 0 4 1490 295 348 97 70 chr4 118734015 118734315 -36895805 + LTR16C LTR ERVL 7 314 -175 4 1490 1408 78 11 0 chr4 118734505 118734696 -36895424 + B2_Mm1a SINE B2 1 193 0 4 1490 264 59 0 0 chr4 118734970 118735004 -36895116 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1490 877 142 14 7 chr4 118735004 118735135 -36894985 - B1_Mur4 SINE Alu -11 139 7 4 1490 434 253 35 128 chr4 118735135 118735164 -36894956 - B4 SINE B4 -77 215 70 4 1490 320 121 0 33 chr4 118735264 118735300 -36894820 + polypyrimidine Low_complexity Low_complexity 24 58 0 4 1490 1385 45 6 0 chr4 118735300 118735477 -36894643 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1490 320 121 0 33 chr4 118735477 118735500 -36894620 + polypyrimidine Low_complexity Low_complexity 1 23 0 4 1490 1052 90 6 0 chr4 118735502 118735669 -36894451 + (TTC)n Simple_repeat Simple_repeat 1 168 0 4 1490 433 246 317 0 chr4 118735676 118735843 -36894277 - ID_B1 SINE B4 -2 222 3 4 1490 244 285 74 28 chr4 118736252 118736388 -36893732 + MIRm SINE MIR 57 194 -14 4 1490 871 164 7 14 chr4 118736393 118736541 -36893579 - B1_Mur2 SINE Alu -2 147 1 4 1490 780 274 98 67 chr4 118736713 118737131 -36892989 - MLT1C LTR MaLR -17 450 20 4 1490 612 197 8 30 chr4 118737291 118737422 -36892698 + ID_B1 SINE B4 97 224 0 4 1490 450 36 0 0 chr4 118737482 118737538 -36892582 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1490 498 306 51 7 chr4 118737541 118737679 -36892441 - RSINE1 SINE B4 -20 145 2 4 1490 229 200 0 0 chr4 118737697 118737737 -36892383 + B3A SINE B2 2 41 -157 4 1490 1130 90 0 0 chr4 118737739 118737884 -36892236 + B1_Mus2 SINE Alu 3 147 0 4 1490 1430 78 5 20 chr4 118737911 118738107 -36892013 + B2_Mm2 SINE B2 1 193 -2 4 1490 1209 68 0 0 chr4 118738113 118738260 -36891860 + B1_Mus2 SINE Alu 1 147 0 4 1490 240 143 0 0 chr4 118738260 118738316 -36891804 + (A)n Simple_repeat Simple_repeat 1 56 0 4 1490 1301 102 43 0 chr4 118738322 118738483 -36891637 + B2_Mm2 SINE B2 2 162 -33 4 1490 306 0 0 0 chr4 118738483 118738517 -36891603 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1490 1301 102 43 0 chr4 118738517 118738541 -36891579 + B2_Mm2 SINE B2 163 194 -1 4 1490 355 188 43 14 chr4 118738541 118738606 -36891514 + B3A SINE B2 25 92 -106 4 1490 704 240 0 7 chr4 118738736 118738883 -36891237 + B1_Mur2 SINE Alu 3 148 -1 4 1490 240 35 0 0 chr4 118738969 118738998 -36891122 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1490 806 61 254 0 chr4 118739004 118739118 -36891002 - B1_Mus1 SINE Alu -5 143 1 4 1490 604 212 29 15 chr4 118739139 118739303 -36890817 + B3 SINE B2 9 180 -13 4 1490 272 263 0 38 chr4 118739330 118739409 -36890711 + PB1D10 SINE Alu 42 117 0 4 1490 211 200 0 22 chr4 118739478 118739524 -36890596 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1490 389 284 102 17 chr4 118739552 118739670 -36890450 + RSINE1 SINE B4 2 129 -36 4 1490 359 258 36 1 chr4 118739824 118739926 -36890194 + B1F1 SINE Alu 4 108 -12 4 1490 207 217 22 0 chr4 118740225 118740271 -36889849 + CT-rich Low_complexity Low_complexity 4 50 0 4 1490 731 182 22 20 chr4 118740273 118740419 -36889701 - B1_Mus1 SINE Alu -5 143 1 4 1490 188 67 0 32 chr4 118740419 118740450 -36889670 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1490 607 281 32 7 chr4 118741206 118741360 -36888760 - RSINE1 SINE B4 -4 161 4 4 1490 558 216 111 7 chr4 118742031 118742166 -36887954 - B1F SINE Alu 0 149 1 4 1490 281 307 34 11 chr4 118742086 118742175 -36887945 - B4A SINE B4 -125 167 77 4 1490 183 42 0 0 chr4 118742180 118742204 -36887916 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1490 624 262 101 83 chr4 118743089 118743426 -36886694 + MLT1B LTR MaLR 21 363 -27 4 1490 303 286 180 43 chr4 118744060 118744316 -36885804 - L1M5 LINE L1 -549 5575 5285 4 1490 201 147 0 0 chr4 118745721 118745755 -36884365 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 4 1490 190 97 0 31 chr4 118746635 118746667 -36883453 + MIR SINE MIR 116 146 -116 4 1490 905 47 1 2 chr4 118746932 118747059 -36883061 + B1_Mus1 SINE Alu 1 125 -22 5 1490 420 20 0 0 chr4 118747141 118747190 -36882930 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1490 351 0 0 0 chr4 118747190 118747228 -36882892 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1490 225 286 38 38 chr4 118747263 118747343 -36882777 - MLT1-int LTR MaLR -616 755 676 5 1490 228 274 28 112 chr4 118747370 118747477 -36882643 + MIRc SINE MIR 89 186 -22 5 1490 396 59 0 0 chr4 118747897 118747948 -36882172 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1490 214 175 0 24 chr4 118748071 118748112 -36882008 + C-rich Low_complexity Low_complexity 1 40 0 5 1490 253 260 112 52 chr4 118748268 118748402 -36881718 + MIRc SINE MIR 24 165 -103 5 1490 207 208 19 19 chr4 118748481 118748535 -36881585 + CT-rich Low_complexity Low_complexity 1 54 0 5 1490 480 176 132 58 chr4 118748591 118748712 -36881408 + B1_Mur2 SINE Alu 2 131 -18 5 1490 279 113 0 0 chr4 118748723 118748776 -36881344 + (CAAT)n Simple_repeat Simple_repeat 2 54 0 5 1490 434 292 98 44 chr4 118748982 118749256 -36880864 + MLT1C LTR MaLR 198 467 0 5 1490 458 219 37 19 chr4 118749383 118749490 -36880630 - LTR48B LTR ERV1 -1 786 678 5 1490 516 273 123 43 chr4 118749633 118749936 -36880184 - LTR48B LTR ERV1 -269 375 27 5 1490 212 372 49 0 chr4 118750111 118750213 -36879907 + MIR SINE MIR 35 141 -67 5 1490 189 0 0 0 chr4 118750309 118750330 -36879790 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1490 504 0 0 0 chr4 118750482 118750538 -36879582 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1490 1010 143 40 6 chr4 118750538 118750714 -36879406 + B2_Mm2 SINE B2 14 195 0 5 1490 624 247 202 36 chr4 118750782 118751059 -36879061 + MLT1A0 LTR MaLR 1 323 -42 5 1491 263 267 214 0 chr4 118751334 118751465 -36878655 + L1M4 LINE L1 5239 5397 -749 5 1491 315 319 8 96 chr4 118751508 118751633 -36878487 + Lx8 LINE L1 7215 7328 -145 5 1491 360 0 0 0 chr4 118751633 118751673 -36878447 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1491 753 207 44 0 chr4 118751685 118751820 -36878300 + B1_Mur2 SINE Alu 1 141 -8 5 1491 906 129 0 23 chr4 118751827 118751846 -36878274 + polypurine Low_complexity Low_complexity 3 21 0 5 1491 1170 68 7 20 chr4 118751846 118751996 -36878124 + B1_Mus1 SINE Alu 1 148 0 5 1491 906 129 0 23 chr4 118751996 118752151 -36877969 + GA-rich Low_complexity Low_complexity 22 173 0 5 1491 642 151 46 6 chr4 118752338 118752511 -36877609 + CT-rich Low_complexity Low_complexity 1 180 0 5 1491 611 130 128 0 chr4 118752511 118752631 -36877489 - B1_Mus2 SINE Alu -1 149 12 5 1491 350 216 114 0 chr4 118752555 118752643 -36877477 - B4 SINE B4 -114 178 81 5 1491 2684 233 76 32 chr4 118752699 118753514 -36876606 - Lx8 LINE L1 -325 7148 6298 5 1491 1935 91 63 66 chr4 118753535 118753854 -36876266 - ORR1A3 LTR MaLR -8 318 1 5 1491 1189 61 7 0 chr4 118753900 118754047 -36876073 + B1_Mus1 SINE Alu 1 148 0 5 1491 30 27 0 0 chr4 118754138 118754175 -36875945 + AT_rich Low_complexity Low_complexity 1 37 0 5 1491 309 208 0 0 chr4 118754198 118754251 -36875869 - B1_Mur2 SINE Alu -21 128 76 5 1491 1120 101 0 7 chr4 118754280 118754429 -36875691 + B1_Mus1 SINE Alu 1 148 0 5 1491 387 0 0 0 chr4 118754470 118754513 -36875607 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1491 234 0 0 0 chr4 118754513 118754538 -36875582 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1491 615 245 119 52 chr4 118754559 118754753 -36875367 - B3 SINE B2 -9 207 1 5 1491 291 260 19 65 chr4 118754767 118754874 -36875246 + L1M4 LINE L1 5384 5485 -694 5 1491 348 290 9 83 chr4 118755958 118755991 -36874129 + RSINE1 SINE B4 11 42 -123 5 1491 1075 87 14 0 chr4 118755991 118756129 -36873991 + B1_Mus2 SINE Alu 1 140 -7 5 1491 348 290 9 83 chr4 118756129 118756204 -36873916 + RSINE1 SINE B4 43 111 -54 5 1491 324 0 0 0 chr4 118756248 118756284 -36873836 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1491 240 349 87 12 chr4 118756416 118756588 -36873532 + L2c LINE L2 3034 3211 -164 5 1491 201 254 0 33 chr4 118756685 118756746 -36873374 + (ATGGTG)n Simple_repeat Simple_repeat 6 64 0 5 1491 638 235 46 8 chr4 118756916 118757093 -36873027 - L1MEc LINE L1 -678 5939 5765 5 1491 297 0 0 0 chr4 118757101 118757134 -36872986 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1491 955 232 5 21 chr4 118757144 118757164 -36872956 - B3 SINE B2 -2 214 195 5 1491 528 59 0 0 chr4 118757164 118757232 -36872888 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 5 1491 955 232 5 21 chr4 118757232 118757400 -36872720 - B3 SINE B2 -22 194 29 5 1491 197 33 33 0 chr4 118757418 118757448 -36872672 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1491 1067 94 0 41 chr4 118757448 118757593 -36872527 - B1_Mus1 SINE Alu -9 139 1 5 1491 333 297 50 31 chr4 118757598 118757758 -36872362 - L1MEc LINE L1 -576 5776 5614 5 1491 547 88 11 11 chr4 118757766 118757858 -36872262 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1491 558 288 111 100 chr4 118757865 118758154 -36871966 - B4A SINE B4 0 292 1 5 1491 414 0 0 0 chr4 118758255 118758301 -36871819 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 5 1491 858 182 0 28 chr4 118758301 118758442 -36871678 - B1_Mur4 SINE Alu -13 137 1 5 1491 590 292 7 7 chr4 118758457 118758605 -36871515 - B1_Mur1 SINE Alu -1 148 1 5 1491 237 33 0 0 chr4 118758609 118758639 -36871481 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1491 782 201 149 6 chr4 118758639 118758814 -36871306 - B3 SINE B2 -16 200 1 5 1491 845 227 124 0 chr4 118758814 118758999 -36871121 - B3 SINE B2 -5 211 4 5 1491 403 253 0 0 chr4 118759039 118759126 -36870994 - ID_B1 SINE B4 -1 223 137 5 1491 297 248 89 14 chr4 118759180 118759399 -36870721 - L1MEc LINE L1 -1086 5531 5290 5 1491 528 103 43 8 chr4 118759490 118759607 -36870513 + (TG)n Simple_repeat Simple_repeat 2 122 0 5 1491 307 200 204 55 chr4 118759729 118759856 -36870264 - B4 SINE B4 -141 151 1 5 1491 328 199 153 99 chr4 118759860 118760006 -36870114 - B3A SINE B2 -14 184 33 5 1491 459 329 58 79 chr4 118760028 118760358 -36869762 + RLTR26 LTR ERVK 95 417 -225 5 1491 535 114 0 12 chr4 118760546 118760626 -36869494 - B2_Mm2 SINE B2 -116 79 1 5 1491 365 259 71 65 chr4 118760817 118760986 -36869134 - L1MEc LINE L1 -5532 868 699 5 1491 324 70 0 0 chr4 118761518 118761561 -36868559 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1491 628 311 184 24 chr4 118761626 118762136 -36867984 - L1MEc LINE L1 -5765 635 44 5 1491 221 83 28 0 chr4 118762211 118762247 -36867873 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 5 1491 381 347 106 9 chr4 118762734 118762961 -36867159 + MIRb SINE MIR 3 251 -17 5 1491 285 75 0 48 chr4 118762990 118763032 -36867088 + U2 snRNA snRNA 1 40 -148 5 1491 708 322 5 18 chr4 118763049 118763270 -36866850 + ID_B1 SINE B4 1 218 -6 5 1491 234 0 0 0 chr4 118763270 118763296 -36866824 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1491 908 216 92 5 chr4 118763322 118763517 -36866603 + B3 SINE B2 1 212 -4 5 1491 310 185 0 24 chr4 118763519 118763602 -36866518 + GA-rich Low_complexity Low_complexity 1 81 0 5 1491 843 287 69 62 chr4 118763711 118764246 -36865874 + L1MCa LINE L1 447 985 -5523 5 1491 339 270 62 16 chr4 118764251 118764286 -36865834 + MT2B LTR ERVL 127 167 -434 5 1491 451 256 108 8 chr4 118764286 118764416 -36865704 + B1F SINE Alu 1 143 -6 5 1491 480 300 73 50 chr4 118764406 118764431 -36865689 + B4 SINE B4 66 163 -129 5 1491 846 107 59 30 chr4 118764431 118764566 -36865554 + B1_Mus2 SINE Alu 8 146 -1 5 1491 480 300 73 50 chr4 118764566 118764585 -36865535 + B4 SINE B4 164 248 -44 5 1491 698 177 52 30 chr4 118764952 118765086 -36865034 - B1_Mur2 SINE Alu -1 148 12 5 1491 2335 151 82 16 chr4 118765090 118765527 -36864593 + RMER4A LTR ERVK 1 466 0 5 1491 590 205 243 12 chr4 118765695 118765868 -36864252 + B3 SINE B2 2 214 -2 5 1491 31 0 0 0 chr4 118765868 118765899 -36864221 + AT_rich Low_complexity Low_complexity 1 31 0 5 1491 461 164 0 50 chr4 118765902 118766002 -36864118 + B1_Mur2 SINE Alu 56 148 -1 5 1491 378 0 0 0 chr4 118766175 118766217 -36863903 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1491 181 167 67 100 chr4 118767192 118767252 -36862868 - L3 LINE CR1 -374 4115 4058 5 1491 181 389 0 34 chr4 118768311 118768428 -36861692 + MER5B DNA MER1_type 44 156 -22 5 1491 211 230 184 67 chr4 118768778 118768929 -36861191 - MIR SINE MIR -78 184 15 5 1491 1360 100 10 10 chr4 118769931 118770123 -36859997 - B2_Mm1t SINE B2 0 193 2 5 1491 339 188 188 0 chr4 118770180 118770260 -36859860 - ID_B1 SINE B4 -39 185 91 5 1491 289 303 21 12 chr4 118770324 118770462 -36859658 + MIR SINE MIR 48 186 -82 5 1491 749 161 8 30 chr4 118770565 118770699 -36859421 - B1_Mur4 SINE Alu 0 150 20 5 1491 272 293 29 115 chr4 118770602 118770741 -36859379 - MT2B LTR ERVL -337 264 138 5 1491 312 27 0 0 chr4 118770750 118770787 -36859333 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1491 2847 116 44 2 chr4 118772078 118772509 -36857611 - RLTR11B LTR ERVK 0 453 5 5 1491 1793 204 12 87 chr4 118772557 118772844 -36857276 - MTD LTR MaLR -35 384 111 5 1491 749 178 74 0 chr4 118772844 118772979 -36857141 + B1_Mur3 SINE Alu 5 149 0 5 1491 1793 204 12 87 chr4 118772979 118773094 -36857026 - MTD LTR MaLR -309 110 12 5 1491 237 318 0 0 chr4 118773233 118773296 -36856824 - B1F SINE Alu -78 71 9 5 1491 965 132 37 0 chr4 118773323 118773459 -36856661 - B1_Mur4 SINE Alu -8 142 2 5 1491 36 53 0 0 chr4 118773544 118773601 -36856519 + AT_rich Low_complexity Low_complexity 1 57 0 5 1491 332 177 125 0 chr4 118773637 118773733 -36856387 + Lx4B LINE L1 6947 7054 -4 5 1491 575 252 17 0 chr4 118773785 118773900 -36856220 + ID_B1 SINE B4 104 220 -4 5 1491 338 279 54 54 chr4 118773900 118773933 -36856187 - YREP_Mm Unknown Unknown -1518 294 147 5 1491 338 312 226 16 chr4 118774020 118774277 -36855843 + MLT1H2 LTR MaLR 151 461 -28 5 1491 360 43 0 0 chr4 118774490 118774536 -36855584 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1491 362 21 0 21 chr4 118774536 118774583 -36855537 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1491 230 127 0 52 chr4 118774640 118774698 -36855422 + A-rich Low_complexity Low_complexity 1 55 0 6 1491 182 232 206 21 chr4 118775607 118775704 -36854416 - MIR SINE MIR -63 145 31 6 1491 257 274 47 12 chr4 118776295 118776380 -36853740 - RSINE1 SINE B4 0 165 78 6 1491 253 210 0 0 chr4 118776409 118776471 -36853649 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1491 229 336 50 16 chr4 118776606 118776727 -36853393 - B3A SINE B2 -73 125 1 6 1491 251 386 9 0 chr4 118776753 118776867 -36853253 + MIRb SINE MIR 79 193 -75 6 1491 255 269 28 19 chr4 118777140 118777246 -36852874 - L1ME3A LINE L1 -20 6153 6047 6 1491 274 286 0 118 chr4 118777249 118777368 -36852752 + MER96B DNA hAT 1 105 -312 6 1491 280 272 37 74 chr4 118777441 118777576 -36852544 - MER96B DNA hAT -96 321 192 6 1491 797 143 45 0 chr4 118779450 118779583 -36850537 + B1_Mur2 SINE Alu 10 148 -1 6 1491 294 29 0 0 chr4 118779908 118779943 -36850177 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1491 274 293 30 0 chr4 118780950 118781049 -36849071 - MIR SINE MIR -26 236 135 6 1491 191 328 31 0 chr4 118781121 118781185 -36848935 - MIR SINE MIR -65 143 78 6 1491 536 209 70 28 chr4 118782533 118782676 -36847444 - B1_Mur2 SINE Alu 0 149 1 6 1491 840 129 30 8 chr4 118783084 118783217 -36846903 - B1_Mur3 SINE Alu -13 136 1 6 1491 581 202 16 8 chr4 118783658 118783783 -36846337 + RSINE1 SINE B4 11 136 -29 6 1491 379 214 46 35 chr4 118783838 118783925 -36846195 + B1_Mur1 SINE Alu 51 138 -11 6 1491 396 0 0 0 chr4 118783935 118783979 -36846141 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 6 1491 211 150 106 91 chr4 118784525 118784591 -36845529 - MIR3 SINE MIR -30 178 112 6 1491 1234 109 5 54 chr4 118785681 118785884 -36844236 - B2_Mm1a SINE B2 0 193 1 6 1491 246 233 33 0 chr4 118787267 118787327 -36842793 - L1MC LINE L1 -2040 5842 5781 6 1491 233 327 173 0 chr4 118788021 118788125 -36841995 - Cheshire DNA MER1_type -2238 182 61 6 1491 239 276 79 79 chr4 118790259 118790436 -36839684 + L2c LINE L2 3031 3207 -180 6 1491 373 253 36 0 chr4 118790898 118790981 -36839139 - B1_Mus2 SINE Alu -60 87 2 6 1491 362 301 136 25 chr4 118790989 118791187 -36838933 - L1MC4a LINE L1 -1901 5981 5762 6 1491 539 306 6 12 chr4 118794891 118795053 -36835067 + RSINE1 SINE B4 5 165 0 6 1491 547 258 0 36 chr4 118795419 118795556 -36834564 + ID_B1 SINE B4 86 217 -7 6 1491 404 328 87 52 chr4 118796646 118796932 -36833188 - MER2 DNA MER2_type -12 333 38 6 1491 245 305 74 63 chr4 118797550 118797725 -36832395 - MIR3 SINE MIR -26 182 6 6 1491 505 319 70 0 chr4 118797820 118798005 -36832115 - MIR SINE MIR -44 218 21 6 1491 368 175 43 9 chr4 118798051 118798166 -36831954 + CT-rich Low_complexity Low_complexity 2 120 0 6 1491 292 250 10 102 chr4 118798502 118798600 -36831520 - MER20 DNA MER1_type -4 215 127 6 1491 505 210 108 71 chr4 118800365 118800527 -36829593 - B3 SINE B2 0 216 34 6 1491 726 167 15 22 chr4 118801578 118801713 -36828407 + B1_Mur2 SINE Alu 9 142 -7 6 1491 428 167 26 0 chr4 118802382 118802460 -36827660 + ID4 SINE ID 4 83 0 6 1491 661 288 17 0 chr4 118802702 118802879 -36827241 + B3A SINE B2 3 182 -16 6 1491 459 0 0 0 chr4 118803687 118803738 -36826382 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1491 345 247 216 0 chr4 118803784 118803881 -36826239 + PB1D7 SINE Alu 3 120 0 6 1491 381 22 0 0 chr4 118806325 118806371 -36823749 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1491 756 181 157 29 chr4 118807955 118808211 -36821909 - ORR1D1 LTR MaLR 0 374 1 6 1491 24 67 0 0 chr4 118809277 118809322 -36820798 + AT_rich Low_complexity Low_complexity 1 45 0 6 1491 226 200 0 0 chr4 118811163 118811203 -36818917 + C-rich Low_complexity Low_complexity 1 40 0 6 1491 468 218 56 133 chr4 118811945 118812024 -36818096 - RSINE1 SINE B4 -30 135 61 6 1491 1057 103 121 0 chr4 118812024 118812198 -36817922 + B2_Mm2 SINE B2 1 195 0 6 1491 468 218 56 133 chr4 118812198 118812261 -36817859 - RSINE1 SINE B4 -105 60 4 6 1491 245 226 48 114 chr4 118812396 118812425 -36817695 - Lx8 LINE L1 -791 6682 6654 6 1491 1185 72 16 22 chr4 118812425 118812610 -36817510 + L1_Mus3 LINE L1 6455 6638 0 6 1491 245 226 48 114 chr4 118812610 118812685 -36817435 - Lx8 LINE L1 -820 6653 6586 6 1491 1352 54 48 5 chr4 118813155 118813341 -36816779 - B2_Mm2 SINE B2 0 195 2 6 1491 328 298 129 0 chr4 118813424 118813548 -36816572 - RMER15 LTR ERVL -14 561 422 6 1491 203 264 120 11 chr4 118814088 118814180 -36815940 + MIRm SINE MIR 42 143 -133 6 1491 755 132 41 0 chr4 118814219 118814340 -36815780 + B1_Mus2 SINE Alu 21 146 -1 6 1491 653 194 8 15 chr4 118814615 118814746 -36815374 - B1_Mur2 SINE Alu 0 149 20 6 1491 299 25 0 24 chr4 118814750 118814791 -36815329 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1491 807 239 50 5 chr4 118814909 118815107 -36815013 - B3 SINE B2 -5 211 5 6 1491 2120 290 58 47 chr4 118815113 118815919 -36814201 - Lx8 LINE L1 -129 7344 6530 6 1491 757 243 56 60 chr4 118815967 118816182 -36813938 - ID_B1 SINE B4 0 224 11 6 1491 548 274 115 17 chr4 118816725 118816959 -36813161 - L1MC LINE L1 -2508 3638 3382 6 1491 1161 189 136 14 chr4 118816961 118817256 -36812864 + ORR1D1 LTR MaLR 1 331 -43 6 1491 499 135 104 0 chr4 118817277 118817373 -36812747 - B3 SINE B2 -110 106 1 6 1491 281 150 131 16 chr4 118817376 118817437 -36812683 + ORR1D1 LTR MaLR 302 369 -1 6 1491 598 201 260 9 chr4 118817871 118818100 -36812020 + RLTR28B LTR ERVL 37 322 -159 6 1491 275 130 36 36 chr4 118818178 118818234 -36811886 + RLTR28B LTR ERVL 449 504 -20 6 1491 333 68 0 0 chr4 118818386 118818430 -36811690 + (GGA)n Simple_repeat Simple_repeat 3 46 0 6 1491 5711 276 115 74 chr4 118818583 118819019 -36811101 + ERVL-int LTR ERVL 2284 2774 -2983 6 1491 2205 76 132 11 chr4 118819019 118819367 -36810753 + RLTR10 LTR ERVK 1 390 0 6 1491 5711 276 115 74 chr4 118819367 118820521 -36809599 + ERVL-int LTR ERVL 2775 3960 -1797 6 1491 642 232 14 0 chr4 118820521 118820659 -36809461 + B1F2 SINE Alu 1 140 -9 6 1491 5711 276 115 74 chr4 118820659 118820719 -36809401 + ERVL-int LTR ERVL 3961 3967 -1790 6 1491 1147 34 0 14 chr4 118820719 118820867 -36809253 + B1_Mus2 SINE Alu 1 146 -1 6 1491 5711 276 115 74 chr4 118820867 118821848 -36808272 + ERVL-int LTR ERVL 3968 5026 -731 6 1491 353 294 61 51 chr4 118821929 118822126 -36807994 + ERVL-int LTR ERVL 5123 5321 -393 6 1491 399 295 69 11 chr4 118822171 118822346 -36807774 + ERVL-int LTR ERVL 5444 5628 -129 6 1491 333 0 0 0 chr4 118822478 118822515 -36807605 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1491 364 185 0 58 chr4 118822541 118822610 -36807510 + ORR1E LTR MaLR 10 74 -285 6 1491 542 345 84 119 chr4 118822614 118822928 -36807192 + MLT2B2 LTR ERVL 48 378 -137 6 1491 787 222 69 16 chr4 118822928 118823116 -36807004 - B3 SINE B2 -17 199 2 6 1491 542 345 84 119 chr4 118823116 118823278 -36806842 + MLT2B2 LTR ERVL 379 507 -8 6 1491 825 175 124 16 chr4 118823299 118823485 -36806635 - B3 SINE B2 -10 206 1 6 1491 198 0 0 0 chr4 118824671 118824693 -36805427 + (TGGG)n Simple_repeat Simple_repeat 4 25 0 6 1491 742 69 0 30 chr4 118824812 118824947 -36805173 - L1_Mus4 LINE L1 0 6636 6506 6 1491 389 292 26 0 chr4 118824952 118825065 -36805055 + MLT2B2 LTR ERVL 439 554 -8 6 1491 3588 62 0 0 chr4 118825105 118825556 -36804564 - L1_Mus4 LINE L1 -124 6512 6062 6 1491 905 261 0 9 chr4 118825581 118825798 -36804322 - B3 SINE B2 0 216 2 6 1491 393 219 39 48 chr4 118825828 118825933 -36804187 + B1F SINE Alu 9 112 -37 6 1491 1183 54 0 0 chr4 118826232 118826379 -36803741 + B1_Mus2 SINE Alu 1 147 0 6 1491 870 189 110 0 chr4 118826406 118826597 -36803523 + B3 SINE B2 2 213 -3 6 1491 494 244 96 0 chr4 118826661 118826796 -36803324 + B1F SINE Alu 1 148 -1 6 1491 479 231 19 0 chr4 118826808 118826916 -36803204 + PB1D10 SINE Alu 8 117 0 6 1491 783 164 0 0 chr4 118827217 118827345 -36802775 + B1_Mus2 SINE Alu 14 141 -6 6 1491 1146 73 73 11 chr4 118828202 118828226 -36801894 - B2_Mm2 SINE B2 -3 192 170 6 1491 1159 125 11 0 chr4 118828226 118828402 -36801718 + B2_Mm1t SINE B2 2 179 -14 6 1491 333 0 0 0 chr4 118828412 118828449 -36801671 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 6 1491 1146 73 73 11 chr4 118828449 118828592 -36801528 - B2_Mm2 SINE B2 -36 159 5 6 1491 581 219 99 33 chr4 118828621 118828772 -36801348 - RSINE1 SINE B4 -1 164 4 6 1491 216 237 237 0 chr4 118828772 118828848 -36801272 - PB1D7 SINE Alu -3 117 24 6 1491 408 259 26 8 chr4 118828886 118829003 -36801117 + RSINE1 SINE B4 14 132 -33 6 1491 686 235 52 36 chr4 118829111 118829305 -36800815 - B3A SINE B2 -1 197 1 6 1491 2563 63 3 3 chr4 118829356 118829706 -36800414 - L1Md_F2 LINE L1 -1 6581 6232 6 1491 661 136 55 0 chr4 118829833 118829943 -36800177 - B1_Mus2 SINE Alu -6 141 26 6 1491 255 356 19 29 chr4 118829943 118830047 -36800073 + MLT1A0 LTR MaLR 2 104 -261 6 1491 1379 78 5 0 chr4 118830093 118830284 -36799836 - B2_Mm1t SINE B2 0 193 2 6 1491 396 0 0 0 chr4 118830461 118830505 -36799615 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1491 391 259 51 74 chr4 118830549 118830724 -36799396 - B4A SINE B4 -120 172 2 6 1491 212 333 0 13 chr4 118830961 118831040 -36799080 - B4 SINE B4 -214 78 1 6 1491 809 252 23 14 chr4 118831151 118831370 -36798750 + B3A SINE B2 7 216 0 6 1491 1113 176 39 0 chr4 118831509 118831713 -36798407 + B3 SINE B2 1 212 -4 6 1491 1349 35 81 0 chr4 118831748 118831907 -36798213 + B2_Mm1a SINE B2 2 160 -33 6 1491 387 0 0 0 chr4 118831907 118831950 -36798170 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 1491 1349 35 81 0 chr4 118831950 118831964 -36798156 + B2_Mm1a SINE B2 161 187 -6 6 1491 748 185 18 12 chr4 118831973 118832143 -36797977 + Lx4B LINE L1 6877 7047 -11 6 1491 1482 62 0 5 chr4 118832209 118832404 -36797716 - B2_Mm2 SINE B2 0 195 2 7 1491 1601 220 94 23 chr4 118832479 118833078 -36797042 - RMER12 LTR ERVK -596 808 1 7 1491 393 229 36 0 chr4 118833078 118833152 -36796968 + ORR1D2 LTR MaLR 288 364 -6 7 1491 1868 252 100 49 chr4 118833206 118834043 -36796077 - L1MC1 LINE L1 -139 6369 5490 7 1491 349 245 89 67 chr4 118834056 118834214 -36795906 + B3A SINE B2 2 186 -9 7 1491 1295 106 0 11 chr4 118834225 118834407 -36795713 + B2_Mm2 SINE B2 2 181 -14 7 1491 1677 164 121 69 chr4 118834417 118834595 -36795525 - ORR1B2 LTR MaLR -1 366 199 7 1491 2739 45 0 3 chr4 118834595 118834926 -36795194 - L1_Mus1 LINE L1 0 6567 6238 7 1491 1677 164 121 69 chr4 118834926 118835095 -36795025 - ORR1B2 LTR MaLR -169 198 1 7 1491 938 118 0 0 chr4 118835113 118835240 -36794880 - B1_Mus2 SINE Alu 0 147 21 7 1491 280 192 185 37 chr4 118835156 118835264 -36794856 - RLTR25B LTR ERVK -519 509 386 7 1491 1133 258 133 47 chr4 118835273 118835332 -36794788 - L1MC1 LINE L1 -905 5416 5348 7 1491 261 0 0 0 chr4 118835332 118835361 -36794759 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 1491 1179 37 0 0 chr4 118835361 118835496 -36794624 - B1_Mus1 SINE Alu -12 136 2 7 1491 1133 258 133 47 chr4 118835496 118835646 -36794474 - L1MC1 LINE L1 -974 5347 5216 7 1491 693 237 35 6 chr4 118835646 118835664 -36794456 - B3A SINE B2 -19 179 162 7 1491 803 10 10 0 chr4 118835664 118835760 -36794360 + (GA)n Simple_repeat Simple_repeat 1 97 0 7 1491 693 237 35 6 chr4 118835760 118835915 -36794205 - B3A SINE B2 -37 161 2 7 1491 1133 266 142 41 chr4 118835915 118836465 -36793655 - L1MC1 LINE L1 -1106 5215 4576 7 1491 1752 146 214 6 chr4 118836488 118836806 -36793314 - ORR1C2 LTR MaLR 0 384 1 7 1491 604 174 51 83 chr4 118836836 118836993 -36793127 - RSINE1 SINE B4 0 165 14 7 1491 313 225 0 53 chr4 118837024 118837099 -36793021 - B3 SINE B2 -143 73 3 7 1491 342 164 68 28 chr4 118837139 118837224 -36792896 - B1_Mur4 SINE Alu -14 113 25 7 1491 955 284 98 15 chr4 118837231 118837639 -36792481 - L1MC1 LINE L1 -6044 464 23 7 1491 445 242 21 42 chr4 118837648 118837743 -36792377 - PB1D10 SINE Alu -24 93 1 7 1491 906 188 100 0 chr4 118837776 118837946 -36792174 + ID_B1 SINE B4 32 218 -6 7 1491 1423 65 33 0 chr4 118838124 118838308 -36791812 - B2_Mm2 SINE B2 -2 193 4 7 1491 216 0 0 0 chr4 118838503 118838527 -36791593 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1491 264 187 171 67 chr4 118838527 118838623 -36791497 - B1_Mus2 SINE Alu -11 109 1 7 1491 251 221 176 55 chr4 118838627 118838718 -36791402 - PB1D10 SINE Alu -6 111 10 7 1491 865 267 142 31 chr4 118838726 118839205 -36790915 - L1M4c LINE L1 -4656 1990 1459 7 1491 666 209 8 15 chr4 118839206 118839337 -36790783 - B1F SINE Alu 0 149 20 7 1491 460 281 18 36 chr4 118839430 118839596 -36790524 + RSINE1 SINE B4 3 165 0 7 1491 291 149 0 0 chr4 118839732 118839779 -36790341 - B1_Mur2 SINE Alu 0 149 103 7 1491 669 227 46 13 chr4 118839778 118839930 -36790190 - B3A SINE B2 -38 160 4 7 1491 315 302 70 0 chr4 118840028 118840114 -36790006 - L1M4c LINE L1 -5146 1396 1305 7 1491 626 175 17 17 chr4 118840288 118840404 -36789716 - B1_Mur4 SINE Alu -1 149 34 7 1491 728 184 25 0 chr4 118840593 118840736 -36789384 - B1_Mur2 SINE Alu 0 149 1 7 1491 263 254 48 0 chr4 118840775 118840838 -36789282 + polypurine Low_complexity Low_complexity 4 69 0 7 1491 231 236 36 18 chr4 118840841 118840897 -36789223 + MIRc SINE MIR 206 262 -6 7 1491 957 192 19 0 chr4 118840943 118841099 -36789021 - RSINE1 SINE B4 -4 161 3 7 1491 265 307 65 6 chr4 118841142 118841268 -36788852 + MIRb SINE MIR 52 189 -79 7 1491 423 0 0 0 chr4 118842358 118842405 -36787715 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1491 234 0 0 0 chr4 118842573 118842599 -36787521 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1491 241 339 8 8 chr4 118843285 118843407 -36786713 - MMSAT4 Satellite Satellite -1 167 46 7 1491 703 171 0 0 chr4 118844740 118844851 -36785269 - B1_Mur3 SINE Alu -5 144 34 7 1491 872 182 0 26 chr4 118844959 118845111 -36785009 + B1_Mur2 SINE Alu 1 148 -1 7 1491 752 250 27 27 chr4 118845144 118845329 -36784791 + B3A SINE B2 1 185 -13 7 1491 183 361 12 12 chr4 118845491 118845575 -36784545 - MIRb SINE MIR -8 260 177 7 1491 359 212 0 0 chr4 118845575 118845641 -36784479 + MurSatRep1 Unknown Unknown 233 298 -1839 7 1491 394 266 100 15 chr4 118845642 118845772 -36784348 - MIRb SINE MIR -114 154 14 7 1491 226 311 82 88 chr4 118845776 118845970 -36784150 - L2c LINE L2 -166 3221 3029 7 1491 741 237 46 0 chr4 118847528 118847680 -36782440 + B3A SINE B2 2 160 -38 7 1491 318 26 0 0 chr4 118847683 118847722 -36782398 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1491 225 159 0 0 chr4 118847822 118847866 -36782254 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 7 1491 811 308 57 42 chr4 118848256 118848639 -36781481 + MLT2B4 LTR ERVL 1 377 -37 7 1491 288 0 0 0 chr4 118848639 118848671 -36781449 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1491 588 315 72 79 chr4 118848671 118848704 -36781416 + MLT2B4 LTR ERVL 378 414 0 7 1491 2850 68 8 10 chr4 118848908 118849295 -36780825 + L1_Mus3 LINE L1 6248 6633 -5 7 1491 746 223 32 64 chr4 118849298 118849485 -36780635 - B3A SINE B2 -16 182 2 7 1491 426 323 38 0 chr4 118849559 118849692 -36780428 - B1_Mur3 SINE Alu -10 139 2 7 1491 551 295 60 50 chr4 118851509 118851691 -36778429 + ID_B1 SINE B4 41 224 0 7 1491 1103 149 26 5 chr4 118851770 118851959 -36778161 + URR1A DNA MER1_type 33 225 -1 7 1491 1433 200 101 21 chr4 118851959 118852316 -36777804 + MTD LTR MaLR 32 421 0 7 1491 576 188 38 79 chr4 118852316 118852427 -36777693 - MTD LTR MaLR -51 368 227 7 1491 318 50 0 0 chr4 118852427 118852467 -36777653 + (CAA)n Simple_repeat Simple_repeat 3 42 0 7 1491 429 299 26 94 chr4 118852467 118852501 -36777619 - MTD LTR MaLR -153 226 197 7 1491 884 160 18 41 chr4 118853044 118853213 -36776907 - B2_Mm2 SINE B2 -14 181 17 7 1491 212 302 0 16 chr4 118853156 118853220 -36776900 - ID4_ SINE ID -11 72 10 7 1491 851 184 0 45 chr4 118853417 118853571 -36776549 - B1_Mur1 SINE Alu -1 148 2 7 1491 472 257 63 44 chr4 118854550 118854709 -36775411 - MIRb SINE MIR -105 163 2 7 1491 317 319 48 20 chr4 118855004 118855151 -36774969 - MIRb SINE MIR -116 152 2 7 1491 285 340 136 28 chr4 118855542 118855793 -36774327 + L2 LINE L2 2617 2894 -525 7 1491 196 254 0 35 chr4 118855837 118855894 -36774226 - L2a LINE L2 -51 3375 3321 7 1491 272 318 4 37 chr4 118857113 118857233 -36772887 + MIRb SINE MIR 82 201 -61 7 1491 389 246 50 112 chr4 118857604 118857637 -36772483 + MT2B LTR ERVL 130 278 -322 7 1491 717 195 0 24 chr4 118857637 118857763 -36772357 + B1_Mur4 SINE Alu 1 123 -27 7 1491 389 205 13 0 chr4 118857960 118858038 -36772082 - B3 SINE B2 -2 214 136 7 1491 1388 176 0 0 chr4 118858813 118859029 -36771091 + B3 SINE B2 1 216 0 7 1491 267 31 0 0 chr4 118859273 118859305 -36770815 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1491 1282 41 0 0 chr4 118859305 118859452 -36770668 - B1_Mus2 SINE Alu 0 147 1 7 1491 557 202 192 15 chr4 118860482 118860655 -36769465 - B3 SINE B2 -4 194 1 7 1491 941 185 80 5 chr4 118861218 118861419 -36768701 + B3 SINE B2 1 216 0 7 1491 285 29 0 0 chr4 118861762 118861796 -36768324 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 7 1491 31 44 0 0 chr4 118861847 118861892 -36768228 + AT_rich Low_complexity Low_complexity 1 45 0 7 1491 304 221 117 0 chr4 118862865 118862942 -36767178 + L1MA4 LINE L1 5847 5932 -368 7 1491 360 0 0 0 chr4 118862964 118863004 -36767116 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1491 222 37 0 0 chr4 118863919 118863946 -36766174 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1491 255 326 143 0 chr4 118864360 118864458 -36765662 - PB1D10 SINE Alu -5 112 1 7 1491 441 0 0 0 chr4 118864604 118864653 -36765467 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1491 1126 58 0 0 chr4 118864653 118864790 -36765330 - B1_Mus1 SINE Alu -10 138 2 7 1491 438 157 0 0 chr4 118864883 118864966 -36765154 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1491 859 203 6 6 chr4 118864966 118865125 -36764995 - B4A SINE B4 0 292 134 7 1491 584 133 0 32 chr4 118865225 118865318 -36764802 - PB1D9 SINE Alu -2 118 29 7 1491 1176 140 16 5 chr4 118865335 118865522 -36764598 - B2_Mm2 SINE B2 -6 189 1 7 1491 259 275 11 81 chr4 118865709 118865796 -36764324 - ID4_ SINE ID -1 82 2 7 1491 494 230 37 73 chr4 118865796 118865932 -36764188 - B1F SINE Alu 0 149 19 7 1491 363 227 236 5 chr4 118865934 118866129 -36763991 - L1MB2 LINE L1 -41 6130 5891 7 1491 546 230 0 0 chr4 118866265 118866365 -36763755 - B1_Mur1 SINE Alu -30 119 20 7 1491 358 280 173 0 chr4 118866439 118866607 -36763513 + MIR SINE MIR 66 262 0 7 1491 297 0 0 0 chr4 118866754 118866787 -36763333 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1491 1040 146 0 0 chr4 118866809 118866967 -36763153 + ORR1A4 LTR MaLR 1 158 -171 7 1491 810 168 26 59 chr4 118866962 118867114 -36763006 + B3A SINE B2 6 152 -46 7 1491 1187 93 0 0 chr4 118867103 118867265 -36762855 + ORR1A4 LTR MaLR 168 329 0 7 1491 287 217 0 48 chr4 118867275 118867338 -36762782 + ID4 SINE ID 3 62 -21 7 1491 897 182 7 0 chr4 118867338 118867486 -36762634 - B1_Mur1 SINE Alu 0 149 1 7 1491 654 13 0 0 chr4 118867500 118867575 -36762545 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 7 1491 235 375 8 8 chr4 118867582 118867703 -36762417 - MIRc SINE MIR -32 236 116 7 1491 231 194 39 65 chr4 118867812 118867889 -36762231 + C-rich Low_complexity Low_complexity 5 79 0 7 1491 28 29 0 0 chr4 118867945 118867980 -36762140 + GC_rich Low_complexity Low_complexity 1 35 0 7 1491 195 42 0 0 chr4 118868139 118868163 -36761957 + (CGGG)n Simple_repeat Simple_repeat 1 24 0 7 1491 255 243 125 8 chr4 118868294 118868414 -36761706 - MIR SINE MIR -93 175 37 8 1491 195 42 0 0 chr4 118868679 118868703 -36761417 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1491 214 285 37 49 chr4 118868777 118868879 -36761241 - MIR SINE MIR -87 121 23 7 1491 266 268 168 9 chr4 118869059 118869172 -36760948 + RSINE1 SINE B4 25 155 -10 8 1491 270 0 0 0 chr4 118869172 118869202 -36760918 + (CCA)n Simple_repeat Simple_repeat 3 32 0 8 1491 680 236 32 21 chr4 118869767 118869953 -36760167 - B3A SINE B2 -10 188 1 8 1491 224 310 88 9 chr4 118870259 118870373 -36759747 - L2a LINE L2 -4 3422 3300 8 1491 425 277 34 29 chr4 118870609 118870769 -36759351 + MIRb SINE MIR 85 251 -17 8 1491 255 181 104 65 chr4 118871074 118871151 -36758969 - ID4_ SINE ID -2 81 2 8 1491 513 265 0 41 chr4 118871692 118871814 -36758306 + PB1D10 SINE Alu 1 117 0 8 1491 872 186 0 0 chr4 118872083 118872223 -36757897 - B1_Mur1 SINE Alu -8 141 2 8 1491 340 241 12 60 chr4 118872288 118872372 -36757748 - B3 SINE B2 -136 80 1 8 1491 508 198 37 19 chr4 118872403 118872511 -36757609 - B1_Mur2 SINE Alu 0 149 40 8 1491 1127 154 50 15 chr4 118872518 118872716 -36757404 - B3 SINE B2 -11 205 1 8 1491 659 186 64 128 chr4 118873966 118874169 -36755951 + B3A SINE B2 1 190 -8 8 1491 180 0 0 0 chr4 118874177 118874197 -36755923 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1491 686 188 22 8 chr4 118874202 118874336 -36755784 + B1_Mur1 SINE Alu 5 140 -9 8 1491 565 135 52 10 chr4 118874828 118874925 -36755195 + PB1D10 SINE Alu 1 101 -16 8 1491 238 311 135 58 chr4 118875144 118875352 -36754768 + MIRb SINE MIR 34 257 -11 8 1491 325 227 9 9 chr4 118875526 118875637 -36754483 + CT-rich Low_complexity Low_complexity 1 111 0 8 1491 432 0 0 0 chr4 118875831 118875879 -36754241 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1491 365 346 15 15 chr4 118876375 118876507 -36753613 - Charlie1a DNA MER1_type -706 749 618 8 1491 1278 107 6 17 chr4 118876522 118876703 -36753417 + B2_Mm1t SINE B2 1 179 -14 8 1491 371 104 0 22 chr4 118876754 118876820 -36753300 + B2_Mm2 SINE B2 47 109 -107 8 1491 475 319 24 12 chr4 118876858 118877026 -36753094 - B3 SINE B2 -46 170 1 8 1491 294 156 0 0 chr4 118877725 118877770 -36752350 + MT2A LTR ERVL 381 425 -108 8 1491 572 271 169 14 chr4 118878736 118879031 -36751089 + MER68 LTR ERVL 125 508 -99 8 1491 828 161 14 7 chr4 118879092 118879230 -36750890 - B1_Mus2 SINE Alu 0 147 9 8 1491 447 291 0 0 chr4 118879240 118879350 -36750770 + MER68 LTR ERVL 454 563 0 8 1491 1056 224 35 0 chr4 118879585 118879786 -36750334 - ID_B1 SINE B4 -14 210 3 8 1491 285 29 0 0 chr4 118879960 118879994 -36750126 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 8 1491 183 305 59 59 chr4 118880355 118880456 -36749664 - MIRb SINE MIR -59 209 109 8 1491 597 234 109 0 chr4 118881287 118881415 -36748705 - B1F SINE Alu -7 142 1 8 1492 416 321 78 18 chr4 118883015 118883234 -36746886 + L1MEg LINE L1 1470 1701 -4383 8 1492 996 105 0 0 chr4 118883661 118883813 -36746307 + (CA)n Simple_repeat Simple_repeat 1 152 0 8 1492 1139 174 251 16 chr4 118884118 118884421 -36745699 + ORR1D1 LTR MaLR 1 374 0 8 1492 1143 224 12 24 chr4 118884425 118884672 -36745448 - B4A SINE B4 -48 244 1 8 1492 409 208 0 13 chr4 118884672 118884749 -36745371 - PB1D10 SINE Alu -41 76 1 8 1492 274 247 52 0 chr4 118884785 118884862 -36745258 - ID4 SINE ID -1 82 2 8 1492 527 257 0 9 chr4 118885861 118885975 -36744145 + ID_B1 SINE B4 85 197 -27 8 1492 222 203 51 0 chr4 118885979 118886038 -36744082 + GA-rich Low_complexity Low_complexity 1 62 0 8 1492 1168 75 7 0 chr4 118886101 118886247 -36743873 - B1_Mus1 SINE Alu 0 148 2 8 1492 212 314 142 28 chr4 118886271 118886412 -36743708 - MIR3 SINE MIR -25 183 27 8 1492 441 189 0 0 chr4 118886412 118886507 -36743613 + (TG)n Simple_repeat Simple_repeat 2 96 0 8 1492 269 353 93 9 chr4 118887217 118887362 -36742758 - MIRb SINE MIR -41 167 16 8 1492 872 134 20 40 chr4 118887805 118887953 -36742167 + B1_Mus2 SINE Alu 2 146 -1 8 1492 1557 124 4 18 chr4 118888760 118888989 -36741131 + URR1A DNA MER1_type 1 226 0 8 1492 185 312 61 24 chr4 118889011 118889093 -36741027 - MIRm SINE MIR -95 181 97 8 1492 867 125 8 0 chr4 118891457 118891585 -36738535 - B1_Mur3 SINE Alu -14 135 7 8 1492 508 210 121 0 chr4 118891610 118891734 -36738386 - B1F SINE Alu -2 147 9 8 1492 856 244 124 35 chr4 118892216 118892530 -36737590 + RLTR15 LTR ERVK 1 342 -17 8 1492 225 303 121 50 chr4 118893139 118893337 -36736783 - L2 LINE L2 -935 2484 2273 8 1492 646 228 189 15 chr4 118893740 118893936 -36736184 - B4 SINE B4 -59 233 4 8 1492 311 228 152 0 chr4 118893968 118894060 -36736060 - PB1D7 SINE Alu 0 120 15 8 1492 1489 63 11 0 chr4 118894513 118894704 -36735416 - B2_Mm1t SINE B2 0 193 1 8 1492 2484 113 26 36 chr4 118894764 118895150 -36734970 + RLTR14 LTR ERV1 1 382 0 8 1492 326 261 39 0 chr4 118895377 118895465 -36734655 + B3A SINE B2 2 92 -124 8 1492 922 180 0 0 chr4 118896043 118896193 -36733927 + B1_Mur4 SINE Alu 1 150 0 8 1492 1165 41 13 27 chr4 118896696 118896846 -36733274 - B1_Mus1 SINE Alu 0 148 1 8 1492 369 290 97 0 chr4 118896894 118897018 -36733102 + MLT1F2 LTR MaLR 29 164 -396 8 1492 350 283 178 49 chr4 118897084 118897318 -36732802 + MLT1F2 LTR MaLR 391 656 -24 8 1492 254 341 24 0 chr4 118897698 118897710 -36732410 - ID_B1 SINE B4 -129 95 9 8 1492 295 301 14 0 chr4 118897710 118897783 -36732337 - ID4_ SINE ID -1 82 9 8 1492 412 226 104 0 chr4 118897836 118897942 -36732178 + B1F SINE Alu 7 123 -26 8 1492 348 268 98 0 chr4 118897942 118897959 -36732161 + ID_B1 SINE B4 88 222 -2 8 1492 687 246 30 59 chr4 118898054 118898257 -36731863 - B3A SINE B2 0 198 2 8 1492 1019 98 115 44 chr4 118900216 118900398 -36729722 + B2_Mm2 SINE B2 1 195 0 8 1492 289 309 137 23 chr4 118901064 118901193 -36728927 - PB1D10 SINE Alu -21 128 2 8 1492 638 160 126 30 chr4 118901247 118901382 -36728738 + B1_Mur2 SINE Alu 1 148 -1 8 1492 979 75 0 93 chr4 118901387 118901549 -36728571 + B1_Mm SINE Alu 1 147 0 8 1492 1456 89 5 16 chr4 118901558 118901752 -36728368 + B2_Mm1t SINE B2 1 192 -1 8 1492 180 0 0 0 chr4 118901915 118901935 -36728185 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1492 677 263 34 0 chr4 118902065 118902244 -36727876 - B3 SINE B2 -3 213 29 8 1492 2499 90 16 0 chr4 118902259 118902580 -36727540 + ORR1A3 LTR MaLR 1 326 0 8 1492 726 276 21 31 chr4 118902682 118902876 -36727244 - B3 SINE B2 -24 192 1 8 1492 859 242 72 0 chr4 118903198 118903392 -36726728 - B3 SINE B2 -7 209 2 8 1492 1353 115 16 0 chr4 118903509 118903700 -36726420 + B2_Mm2 SINE B2 2 195 0 8 1492 22 56 0 0 chr4 118903856 118903892 -36726228 + AT_rich Low_complexity Low_complexity 1 36 0 8 1492 271 213 224 13 chr4 118904331 118904407 -36725713 + PB1D10 SINE Alu 3 94 -23 8 1492 195 42 0 0 chr4 118904545 118904569 -36725551 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1492 539 201 19 120 chr4 118904672 118904830 -36725290 + B1_Mur2 SINE Alu 6 147 -2 8 1492 374 210 83 2 chr4 118907661 118907762 -36722358 + PB1D10 SINE Alu 20 131 -18 8 1492 344 72 0 18 chr4 118908022 118908079 -36722041 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1492 441 36 0 0 chr4 118908079 118908133 -36721987 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1492 1541 57 16 5 chr4 118908189 118908382 -36721738 - B2_Mm2 SINE B2 0 195 1 8 1492 317 216 27 13 chr4 118908529 118908604 -36721516 + ID4 SINE ID 8 83 0 8 1492 379 331 7 51 chr4 118908743 118908880 -36721240 + ID_B1 SINE B4 84 214 -10 8 1492 629 225 29 91 chr4 118908902 118909112 -36721008 - B3A SINE B2 0 198 2 8 1492 1469 81 16 0 chr4 118909669 118909854 -36720266 - B2_Mm2 SINE B2 -6 189 2 8 1492 753 237 206 45 chr4 118909900 118910147 -36719973 + B4A SINE B4 1 287 -5 8 1492 1103 75 14 0 chr4 118910275 118910421 -36719699 + B1_Mus1 SINE Alu 1 148 0 8 1492 180 0 0 0 chr4 118911441 118911461 -36718659 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 8 1492 233 277 154 0 chr4 118912592 118912657 -36717463 + PB1D10 SINE Alu 35 109 -8 8 1492 586 188 62 0 chr4 118912667 118912779 -36717341 + RSINE1 SINE B4 12 130 -35 8 1492 243 125 0 0 chr4 118912805 118912845 -36717275 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1492 1479 75 0 5 chr4 118912892 118913079 -36717041 + B2_Mm2 SINE B2 2 187 -8 8 1492 402 250 21 57 chr4 118913108 118913248 -36716872 + RSINE1 SINE B4 28 162 -3 8 1492 498 83 0 0 chr4 118913302 118913374 -36716746 + B1_Mur4 SINE Alu 79 150 0 8 1492 298 261 0 14 chr4 118913379 118913449 -36716671 + ID SINE ID 10 78 -146 8 1492 1134 65 0 7 chr4 118915663 118915802 -36714318 + B1_Mus1 SINE Alu 2 139 -9 8 1492 203 0 37 0 chr4 118915802 118915829 -36714291 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1492 431 208 129 0 chr4 118915833 118915934 -36714186 + PB1D9 SINE Alu 2 115 -5 8 1492 953 235 30 0 chr4 118915951 118916151 -36713969 + B3 SINE B2 2 207 -9 9 1492 30 49 0 16 chr4 118916151 118916182 -36713938 + AT_rich Low_complexity Low_complexity 1 31 0 9 1492 1048 117 7 0 chr4 118916182 118916327 -36713793 - B1_Mur4 SINE Alu 0 150 5 9 1492 30 49 0 16 chr4 118916327 118916357 -36713763 + AT_rich Low_complexity Low_complexity 1 30 0 9 1492 188 312 78 0 chr4 118916375 118916439 -36713681 - MIR SINE MIR -171 91 23 9 1492 405 86 0 0 chr4 118916893 118916951 -36713169 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1492 195 307 125 0 chr4 118921494 118921582 -36708538 - L2a LINE L2 -60 3366 3268 9 1492 393 247 67 17 chr4 118921669 118921808 -36708312 + B3A SINE B2 7 162 -54 9 1492 815 94 146 15 chr4 118921956 118922086 -36708034 + B1_Mus1 SINE Alu 2 148 0 9 1492 411 291 25 17 chr4 118923052 118923171 -36706949 + ID_B1 SINE B4 80 199 -25 9 1492 200 295 143 0 chr4 118923172 118923277 -36706843 - L2a LINE L2 -1391 2028 1909 9 1492 342 0 0 0 chr4 118923724 118923762 -36706358 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 9 1492 808 174 20 20 chr4 118923762 118923901 -36706219 - B1_Mus1 SINE Alu -5 143 2 9 1492 227 288 63 70 chr4 118924981 118925123 -36704997 - MIRc SINE MIR -68 200 60 9 1492 608 162 8 25 chr4 118925510 118925630 -36704490 + B1_Mur3 SINE Alu 10 127 -22 9 1492 960 63 71 0 chr4 118926063 118926190 -36703930 - B1_Mus1 SINE Alu -12 136 1 9 1492 322 188 0 30 chr4 118927466 118927532 -36702588 + ID4_ SINE ID 7 70 -13 9 1492 360 0 0 0 chr4 118927532 118927572 -36702548 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1492 489 34 0 0 chr4 118927572 118927630 -36702490 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1492 537 76 0 0 chr4 118928794 118928873 -36701247 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1492 372 209 0 0 chr4 118930777 118930863 -36699257 + (TG)n Simple_repeat Simple_repeat 1 86 0 9 1492 183 42 0 0 chr4 118933401 118933425 -36696695 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 9 1492 256 295 181 0 chr4 118933598 118933703 -36696417 - MER5B DNA MER1_type -2 176 53 9 1492 261 0 0 0 chr4 118934840 118934869 -36695251 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1492 230 315 99 0 chr4 118935135 118935246 -36694874 + MER5A1 DNA MER1_type 45 166 0 9 1492 183 42 0 0 chr4 118935347 118935371 -36694749 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1492 565 219 24 24 chr4 118935371 118935497 -36694623 - B1_Mur1 SINE Alu 0 149 24 9 1492 718 229 24 81 chr4 118935504 118935713 -36694407 - B3A SINE B2 0 198 2 9 1492 648 243 7 45 chr4 118935739 118935894 -36694226 - ID_B1 SINE B4 -75 149 1 9 1492 1014 260 32 51 chr4 118935894 118936327 -36693793 - L1_Mur3 LINE L1 -1257 4623 4199 9 1492 728 77 10 0 chr4 118936538 118936642 -36693478 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 9 1492 1167 37 0 0 chr4 118936642 118936776 -36693344 - B1_Mus2 SINE Alu -12 135 2 9 1492 1134 70 7 7 chr4 118937166 118937303 -36692817 + B1_Mm SINE Alu 2 139 -8 9 1492 273 57 0 0 chr4 118937303 118937338 -36692782 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1492 378 0 0 0 chr4 118937635 118937677 -36692443 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1492 320 106 0 0 chr4 118937694 118937741 -36692379 + RSINE1 SINE B4 81 127 -38 9 1492 506 133 44 0 chr4 118937807 118937897 -36692223 + B1_Mur4 SINE Alu 56 149 -1 9 1492 304 163 14 72 chr4 118937991 118938089 -36692031 + B1_Mur2 SINE Alu 27 148 -1 9 1492 570 266 13 59 chr4 118938092 118938244 -36691876 + ID_B1 SINE B4 78 222 -2 9 1492 985 227 34 5 chr4 118938274 118938478 -36691642 + B3 SINE B2 3 212 -4 9 1492 1211 70 121 11 chr4 118938680 118938854 -36691266 - B2_Mm2 SINE B2 -2 193 1 9 1492 572 154 29 9 chr4 118938864 118938969 -36691151 - B1_Mur2 SINE Alu 0 149 43 9 1492 745 275 26 11 chr4 118939114 118939305 -36690815 + MTE2b LTR MaLR 4 197 -182 9 1492 575 74 0 0 chr4 118939305 118939386 -36690734 - B1_Mus2 SINE Alu -66 81 1 9 1492 437 216 222 0 chr4 118939437 118939590 -36690530 + MTE2b LTR MaLR 228 414 -5 9 1492 870 170 20 0 chr4 118939824 118939971 -36690149 - B1_Mur4 SINE Alu 0 150 1 9 1492 1474 74 5 5 chr4 118940013 118940203 -36689917 + B2_Mm1a SINE B2 3 192 -1 9 1492 210 37 0 0 chr4 118940344 118940371 -36689749 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1492 1221 48 0 0 chr4 118940371 118940516 -36689604 - B1_Mus2 SINE Alu -2 145 1 9 1492 289 264 60 52 chr4 118940649 118940765 -36689355 + B4A SINE B4 2 118 -174 9 1492 576 305 126 35 chr4 118940865 118941096 -36689024 - B4A SINE B4 0 292 41 9 1492 324 297 81 140 chr4 118941174 118941409 -36688711 - L1M2 LINE L1 -3274 2869 2649 9 1492 303 328 152 0 chr4 118941472 118941649 -36688471 - L1M2 LINE L1 -3624 2519 2316 9 1492 414 187 53 0 chr4 118941693 118941768 -36688352 - B1_Mur1 SINE Alu -6 143 65 9 1492 263 244 63 13 chr4 118942124 118942203 -36687917 + B3A SINE B2 88 170 -28 9 1492 581 204 169 19 chr4 118942232 118942392 -36687728 + B3 SINE B2 30 213 -3 9 1492 223 262 82 0 chr4 118942413 118942474 -36687646 - B4A SINE B4 -226 66 1 9 1492 1175 68 7 0 chr4 118942531 118942677 -36687443 - B1_Mus1 SINE Alu 0 148 2 9 1492 619 274 66 14 chr4 118942708 118942919 -36687201 + B4A SINE B4 3 224 -68 9 1492 372 314 97 0 chr4 118943428 118943552 -36686568 - ID_B1 SINE B4 -2 222 87 9 1492 843 92 0 0 chr4 118943753 118943862 -36686258 + B2_Mm2 SINE B2 1 109 -86 9 1492 513 278 114 30 chr4 118943863 118943913 -36686207 - B3A SINE B2 -17 181 119 9 1492 2918 24 27 0 chr4 118943913 118944249 -36685871 - ORR1A0 LTR MaLR -1 345 1 9 1492 568 241 0 0 chr4 118944249 118944365 -36685755 - B3 SINE B2 -100 116 1 9 1492 417 352 98 23 chr4 118944413 118944669 -36685451 + B4A SINE B4 3 277 -15 9 1492 234 0 0 0 chr4 118944705 118944731 -36685389 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1492 242 222 0 18 chr4 118944775 118944830 -36685290 - ORR1D2 LTR MaLR -9 361 308 9 1492 453 278 21 0 chr4 118944827 118944924 -36685196 - ORR1D2 LTR MaLR -269 101 3 9 1492 299 321 141 12 chr4 118944947 118945117 -36685003 + MTEa LTR MaLR 174 365 -14 9 1492 402 200 171 17 chr4 118945378 118945495 -36684625 - B1_Mus2 SINE Alu -12 135 1 9 1492 484 243 18 27 chr4 118945572 118945682 -36684438 + PB1D9 SINE Alu 1 109 -11 9 1492 261 0 0 0 chr4 118945682 118945711 -36684409 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1492 1161 62 14 7 chr4 118945723 118945869 -36684251 + B1_Mus1 SINE Alu 2 148 0 9 1492 351 331 62 62 chr4 118946036 118946181 -36683939 + ID_B1 SINE B4 5 149 -75 9 1492 279 242 177 0 chr4 118946141 118946203 -36683917 + B1_Mus2 SINE Alu 29 101 -46 9 1492 1241 114 0 17 chr4 118946221 118946399 -36683721 + B2_Mm2 SINE B2 2 176 -19 9 1492 292 152 14 19 chr4 118946401 118946481 -36683639 + B1_Mur3 SINE Alu 2 116 -33 9 1492 265 292 0 0 chr4 118947386 118947451 -36682669 + MLT1A LTR MaLR 90 154 -220 9 1492 322 312 158 58 chr4 118947727 118948037 -36682083 - L2a LINE L2 -88 3338 2998 9 1492 451 167 146 10 chr4 118948127 118948230 -36681890 - B1F2 SINE Alu 0 149 33 9 1492 302 207 121 12 chr4 118948429 118948512 -36681608 + ORR1D1 LTR MaLR 2 93 -281 9 1492 273 29 0 0 chr4 118948530 118948564 -36681556 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1492 1049 80 0 14 chr4 118948578 118948717 -36681403 - B1_Mus2 SINE Alu -8 139 3 9 1492 295 308 77 11 chr4 118948795 118948890 -36681230 + B1_Mur2 SINE Alu 6 107 -43 9 1492 314 219 132 96 chr4 118948980 118949116 -36681004 - B1_Mm SINE Alu -5 142 2 9 1492 1081 92 92 6 chr4 118949305 118949469 -36680651 + B2_Mm2 SINE B2 2 179 -16 9 1492 402 311 104 33 chr4 118949654 118949837 -36680283 + MT2A LTR ERVL 224 419 -114 9 1492 279 0 0 0 chr4 118949935 118949966 -36680154 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1492 1189 44 0 0 chr4 118949966 118950103 -36680017 - B1_Mus2 SINE Alu -9 138 2 9 1492 383 228 38 12 chr4 118951212 118951292 -36678828 - B1_Mus2 SINE Alu -64 83 2 9 1492 305 250 21 83 chr4 118951292 118951306 -36678814 - MT2B LTR ERVL -359 240 153 9 1492 768 198 145 31 chr4 118952432 118952625 -36677495 + B3 SINE B2 2 216 0 9 1492 295 286 16 97 chr4 118952855 118952880 -36677240 + ID_B1 SINE B4 107 219 -4 9 1492 416 170 61 41 chr4 118952880 118952978 -36677142 + B1_Mur2 SINE Alu 45 144 -5 9 1492 485 245 9 9 chr4 118953001 118953108 -36677012 + PB1D9 SINE Alu 7 113 -7 9 1492 1564 31 0 45 chr4 118953116 118953317 -36676803 + B2_Mm1a SINE B2 2 193 0 9 1492 233 374 32 42 chr4 118953357 118953452 -36676668 + PB1 SINE Alu 3 96 -31 9 1492 198 0 0 0 chr4 118953482 118953504 -36676616 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1492 363 188 43 0 chr4 118954006 118954075 -36676045 + BC1_Mm scRNA scRNA 21 92 -60 9 1492 611 168 39 77 chr4 118954323 118954478 -36675642 - B1_Mur2 SINE Alu 0 149 1 9 1492 437 220 80 35 chr4 118956084 118956197 -36673923 - MIRc SINE MIR -142 126 9 9 1492 285 29 0 0 chr4 118957958 118957992 -36672128 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 9 1492 24 0 0 0 chr4 118959039 118959063 -36671057 + AT_rich Low_complexity Low_complexity 1 24 0 9 1492 265 257 28 14 chr4 118959340 118959411 -36670709 + PB1D9 SINE Alu 40 111 -9 9 1492 296 238 140 56 chr4 118959513 118959620 -36670500 - PB1D9 SINE Alu 0 120 5 9 1492 499 269 92 8 chr4 118959655 118959775 -36670345 + RSINE1 SINE B4 2 131 -34 9 1492 412 206 20 80 chr4 118959813 118959913 -36670207 + B1_Mus2 SINE Alu 42 135 -12 1 1492 234 0 0 0 chr4 118959914 118959940 -36670180 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1492 642 236 111 17 chr4 118960293 118960474 -36669646 + B3 SINE B2 1 198 -18 1 1492 27 29 0 0 chr4 118961866 118961900 -36668220 + AT_rich Low_complexity Low_complexity 1 34 0 1 1492 1546 57 0 10 chr4 118961907 118962102 -36668018 + B2_Mm1a SINE B2 1 193 0 1 1492 1054 43 63 14 chr4 118962135 118962277 -36667843 + B2_Mm2 SINE B2 2 150 -45 1 1492 229 288 103 64 chr4 118963051 118963207 -36666913 + RSINE1 SINE B4 4 165 0 1 1492 1191 54 0 0 chr4 118963399 118963546 -36666574 - B1_Mus2 SINE Alu 0 147 1 1 1492 252 156 0 22 chr4 118963771 118963817 -36666303 - PB1D9 SINE Alu -74 46 2 1 1492 383 266 35 60 chr4 118963898 118964014 -36666106 - ID_B1 SINE B4 -111 113 1 1 1492 402 262 31 54 chr4 118964039 118964062 -36666058 + B4A SINE B4 69 194 -98 1 1492 742 68 0 28 chr4 118964062 118964168 -36665952 + B1_Mus1 SINE Alu 2 104 -44 1 1492 1143 44 0 0 chr4 118964168 118964304 -36665816 + B1_Mus2 SINE Alu 2 137 -10 1 1492 620 148 92 43 chr4 118964304 118964338 -36665782 + B1_Mur1 SINE Alu 106 149 0 1 1492 22 0 0 0 chr4 118965129 118965151 -36664969 + GC_rich Low_complexity Low_complexity 1 22 0 1 1492 34 96 0 0 chr4 118966631 118966735 -36663385 + GC_rich Low_complexity Low_complexity 1 104 0 1 1492 21 0 0 0 chr4 118966823 118966844 -36663276 + GC_rich Low_complexity Low_complexity 1 21 0 1 1492 261 318 7 19 chr4 118966899 118967053 -36663067 + (CGG)n Simple_repeat Simple_repeat 2 153 0 1 1492 481 262 77 31 chr4 118968189 118968319 -36661801 + RSINE1 SINE B4 11 146 -19 1 1492 866 81 73 0 chr4 118968378 118968502 -36661618 + B1_Mus1 SINE Alu 4 136 -12 1 1492 189 0 0 0 chr4 118968512 118968533 -36661587 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1 1492 499 303 126 63 chr4 118968556 118968827 -36661293 + B4A SINE B4 5 292 0 1 1492 1136 76 0 0 chr4 118968876 118969021 -36661099 - B1_Mus2 SINE Alu -2 145 1 1 1492 698 190 43 14 chr4 118969143 118969282 -36660838 + B1_Mus2 SINE Alu 5 147 0 1 1492 590 136 67 10 chr4 118969527 118969631 -36660489 - B1_Mur1 SINE Alu -6 143 34 1 1492 365 251 130 94 chr4 118969668 118969945 -36660175 - B4 SINE B4 -5 287 1 1 1492 278 26 0 25 chr4 118970386 118970426 -36659694 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 1 1492 1103 67 0 0 chr4 118970426 118970560 -36659560 - B1_Mus2 SINE Alu -13 134 1 1 1492 1207 86 16 65 chr4 118970617 118970803 -36659317 + B2_Mm2 SINE B2 1 177 -18 1 1492 180 97 0 0 chr4 118970805 118970836 -36659284 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1492 491 210 145 53 chr4 118970929 118971060 -36659060 + B1F2 SINE Alu 6 148 -1 1 1492 286 202 333 18 chr4 118971116 118971227 -36658893 - B1_Mur2 SINE Alu -3 146 1 1 1492 461 236 66 7 chr4 118971322 118971444 -36658676 - PB1D10 SINE Alu -22 126 4 1 1492 419 227 11 0 chr4 118971362 118971450 -36658670 - ID_B1 SINE B4 -58 166 78 1 1492 224 282 56 14 chr4 118971458 118971530 -36658590 - PB1D9 SINE Alu -18 102 28 1 1492 563 131 0 0 chr4 118971663 118971747 -36658373 + B2_Mm2 SINE B2 2 85 -110 1 1492 543 184 71 0 chr4 118972243 118972341 -36657779 - PB1D9 SINE Alu -6 114 10 1 1492 260 278 224 7 chr4 118972341 118972386 -36657734 - B4 SINE B4 -67 195 42 1 1492 1105 33 213 13 chr4 118972428 118972583 -36657537 + B2_Mm2 SINE B2 2 187 -8 1 1492 1587 32 21 0 chr4 118972870 118973059 -36657061 - B2_Mm1t SINE B2 0 193 1 1 1492 1174 86 109 0 chr4 118973102 118973277 -36656843 + B2_Mm2 SINE B2 1 194 -1 1 1492 386 245 47 38 chr4 118973402 118973508 -36656612 - RSINE1 SINE B4 -56 109 3 1 1492 1025 82 0 104 chr4 118974818 118974982 -36655138 + B1_Mus1 SINE Alu 1 147 -1 1 1492 667 216 232 34 chr4 118975162 118975339 -36654781 + B3 SINE B2 4 215 -1 1 1492 870 267 20 0 chr4 118975500 118975695 -36654425 - B3 SINE B2 -13 203 5 1 1492 285 210 129 0 chr4 118975698 118975760 -36654360 - B4A SINE B4 -195 97 28 1 1492 213 226 16 159 chr4 118975773 118975836 -36654284 - PB1 SINE Alu -12 115 62 1 1492 1690 199 110 66 chr4 118975836 118976338 -36653782 + RMER19B LTR ERVK 1 616 -286 1 1492 242 253 89 51 chr4 118976766 118976845 -36653275 + LTRIS4 LTR ERV1 376 457 -50 1 1492 611 237 98 29 chr4 118976914 118977018 -36653102 + RMER19B LTR ERVK 712 830 -72 1 1492 1029 89 7 0 chr4 118977018 118977153 -36652967 + B1_Mus1 SINE Alu 1 136 -12 1 1492 288 0 0 0 chr4 118977154 118977186 -36652934 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1492 611 237 98 29 chr4 118977186 118977253 -36652867 + RMER19B LTR ERVK 831 897 -5 1 1492 1380 98 5 5 chr4 118977254 118977449 -36652671 + B2_Mm2 SINE B2 1 195 0 1 1492 266 240 91 26 chr4 118977602 118977679 -36652441 - MER3 DNA MER1_type -3 206 125 1 1492 794 271 31 61 chr4 118977682 118977910 -36652210 + ID_B1 SINE B4 2 222 -2 1 1492 400 308 77 0 chr4 118977914 118978044 -36652076 + B1F1 SINE Alu 2 141 -9 1 1492 338 235 59 0 chr4 118978409 118978477 -36651643 - ID4_ SINE ID -5 78 7 1 1492 838 168 0 7 chr4 118978524 118978662 -36651458 - B1_Mur4 SINE Alu -8 142 6 1 1492 1382 95 0 24 chr4 118978673 118978878 -36651242 - L1_Mus2 LINE L1 0 6566 6367 1 1492 1194 68 0 0 chr4 118978958 118979105 -36651015 + B1_Mm SINE Alu 1 147 0 1 1492 328 260 30 40 chr4 118979674 118979774 -36650346 + PB1D9 SINE Alu 4 102 -18 1 1492 2866 170 241 79 chr4 118979781 118980554 -36649566 - RMER19B LTR ERVK -4 898 1 1 1492 238 358 12 0 chr4 118980585 118980666 -36649454 - PB1D10 SINE Alu -34 83 2 1 1492 428 248 42 104 chr4 118980696 118980840 -36649280 - RSINE1 SINE B4 -14 151 17 1 1492 335 289 54 12 chr4 118980865 118980999 -36649121 - B1F SINE Alu -17 132 1 1 1492 29 0 0 0 chr4 118980999 118981028 -36649092 + AT_rich Low_complexity Low_complexity 1 29 0 1 1492 808 175 0 0 chr4 118981028 118981154 -36648966 - B1_Mus2 SINE Alu -21 126 1 1 1492 270 250 27 14 chr4 118981210 118981283 -36648837 + B3 SINE B2 3 76 -140 1 1492 1174 61 0 13 chr4 118981418 118981568 -36648552 + B1_Mus1 SINE Alu 1 148 0 1 1492 231 36 0 0 chr4 118981568 118981596 -36648524 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1492 1379 70 49 0 chr4 118981710 118981895 -36648225 + B2_Mm2 SINE B2 2 195 0 1 1492 803 247 105 0 chr4 118982044 118982234 -36647886 + B3 SINE B2 1 210 -6 1 1492 413 258 32 0 chr4 118982269 118982362 -36647758 - PB1 SINE Alu -30 97 2 1 1492 225 0 0 0 chr4 118982369 118982394 -36647726 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1492 343 250 40 0 chr4 118982408 118982484 -36647636 + ID4_ SINE ID 1 79 -4 1 1492 182 299 117 0 chr4 118984251 118984328 -36645792 - MIR3 SINE MIR -37 171 86 1 1492 1278 90 0 0 chr4 118984444 118984611 -36645509 + B2_Mm2 SINE B2 2 168 -27 1 1492 444 221 23 0 chr4 118985121 118985207 -36644913 - RSINE1 SINE B4 -62 103 16 1 1492 212 250 19 0 chr4 118985459 118985511 -36644609 + CT-rich Low_complexity Low_complexity 2 54 0 1 1492 764 199 0 90 chr4 118985514 118985669 -36644451 - B1_Mus1 SINE Alu -7 141 1 1 1492 469 218 64 96 chr4 118985695 118985815 -36644305 - B4 SINE B4 -73 219 106 1 1492 468 0 0 0 chr4 118985815 118985867 -36644253 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1492 304 331 50 22 chr4 118985869 118986008 -36644112 - RSINE1 SINE B4 -3 162 20 1 1492 469 218 64 96 chr4 118985876 118985903 -36644217 - B4 SINE B4 -187 105 68 1 1492 429 241 44 8 chr4 118986173 118986339 -36643781 - B3A SINE B2 -22 173 1 1 1492 388 218 220 17 chr4 118986402 118986579 -36643541 - ID_B1 SINE B4 -10 214 2 1 1492 246 166 55 58 chr4 118986682 118986773 -36643347 - PB1D7 SINE Alu -13 136 9 1 1492 286 232 75 112 chr4 118986796 118986903 -36643217 - B1F2 SINE Alu -46 103 1 1 1492 330 312 21 0 chr4 118987120 118987216 -36642904 + ID_B1 SINE B4 75 172 -52 1 1492 211 304 0 0 chr4 118987404 118987450 -36642670 - ID4_ SINE ID 0 83 38 1 1492 235 194 0 0 chr4 118987415 118987451 -36642669 - tRNA-Ala-GCY_ tRNA tRNA -9 66 31 1 1492 486 268 40 8 chr4 118987442 118987566 -36642554 + B1F2 SINE Alu 17 144 -5 1 1492 428 293 22 8 chr4 118988106 118988240 -36641880 + B1F SINE Alu 13 148 -1 1 1492 470 248 113 24 chr4 118988256 118988380 -36641740 + RSINE1 SINE B4 2 136 -29 1 1492 557 205 173 0 chr4 118988441 118988568 -36641552 + B1_Mur1 SINE Alu 1 149 0 1 1492 235 277 0 0 chr4 118988603 118988650 -36641470 + ID SINE ID 36 82 -142 1 1492 328 319 106 32 chr4 118989741 118989929 -36640191 + B4A SINE B4 77 278 -14 1 1492 245 29 29 0 chr4 118989967 118990001 -36640119 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1492 28 29 0 0 chr4 118990051 118990086 -36640034 + AT_rich Low_complexity Low_complexity 1 35 0 1 1492 267 121 103 29 chr4 118990086 118990154 -36639966 - Lx9 LINE L1 -1 7643 7571 1 1492 556 159 149 0 chr4 118990161 118990268 -36639852 - B3 SINE B2 -93 123 1 1 1492 318 244 0 79 chr4 118991729 118991818 -36638302 + B4A SINE B4 1 82 -210 1 1492 328 264 0 0 chr4 118991930 118992002 -36638118 - ID4 SINE ID -9 74 3 1 1492 2849 115 166 17 chr4 118993493 118994034 -36636086 - Lx4B LINE L1 -1 7057 6436 1 1492 384 80 0 0 chr4 118994229 118994279 -36635841 - B2_Mm1t SINE B2 -31 162 113 1 1492 567 78 0 0 chr4 118994277 118994354 -36635766 - B2_Mm2 SINE B2 -117 78 2 1 1492 1204 68 0 0 chr4 118994406 118994554 -36635566 - B1_Mus1 SINE Alu 0 148 1 1 1492 438 224 21 28 chr4 118994584 118994698 -36635422 - PB1D10 SINE Alu 0 120 5 1 1492 259 286 70 23 chr4 118994644 118994708 -36635412 - B4A SINE B4 -149 143 76 1 1492 462 308 160 46 chr4 118994708 118994970 -36635150 + B4A SINE B4 1 292 0 1 1492 597 211 90 8 chr4 118995093 118995227 -36634893 + B1_Mus1 SINE Alu 2 146 -2 1 1492 633 222 121 26 chr4 118995251 118995482 -36634638 + Lx8 LINE L1 7187 7439 -34 1 1492 493 246 38 53 chr4 118995491 118995624 -36634496 + ID_B1 SINE B4 86 216 -8 1 1492 519 229 42 17 chr4 118995636 118995756 -36634364 + B3 SINE B2 1 123 -93 1 1492 1069 126 211 0 chr4 118996054 118996229 -36633891 + B3 SINE B2 2 213 -3 1 1492 471 243 262 17 chr4 118996236 118996408 -36633712 + B3 SINE B2 2 215 -1 1 1492 21 57 0 0 chr4 118997220 118997255 -36632865 + AT_rich Low_complexity Low_complexity 1 35 0 1 1492 244 170 0 60 chr4 118997282 118997332 -36632788 - B3 SINE B2 -90 126 80 1 1492 339 319 72 89 chr4 118997564 118997801 -36632319 + RMER2 LTR ERV1 334 566 -1 1 1492 399 256 0 0 chr4 118997801 118997879 -36632241 - B3A SINE B2 -105 93 16 1 1492 1298 108 11 0 chr4 118998100 118998286 -36631834 - B2_Mm1t SINE B2 -4 189 2 1 1492 228 111 0 0 chr4 118998286 118998322 -36631798 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1492 1143 84 19 0 chr4 118998322 118998477 -36631643 - B2_Mm2 SINE B2 -23 172 15 1 1492 229 256 0 55 chr4 118998491 118998582 -36631538 + CT-rich Low_complexity Low_complexity 1 86 0 1 1492 554 75 12 0 chr4 118998631 118998711 -36631409 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1492 4079 85 40 2 chr4 118998739 118999293 -36630827 + MT2B LTR ERVL 26 600 -1 1 1492 300 241 0 81 chr4 118999298 118999384 -36630736 - ID SINE ID -144 80 2 1 1492 260 276 17 0 chr4 118999429 118999487 -36630633 - ID4_ SINE ID -16 67 9 1 1492 693 214 16 0 chr4 118999546 118999672 -36630448 - RSINE1 SINE B4 -33 132 5 1 1492 642 263 38 9 chr4 118999779 118999990 -36630130 - L1M3 LINE L1 -1895 4245 4029 1 1492 270 232 0 0 chr4 119000000 119000056 -36630064 - L1M2 LINE L1 -2122 4021 3966 1 1492 180 0 0 0 chr4 119000056 119000076 -36630044 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1492 527 295 0 14 chr4 119000129 119000270 -36629850 + B1F1 SINE Alu 1 139 -10 3 1492 414 134 0 0 chr4 119000291 119000358 -36629762 + (ATG)n Simple_repeat Simple_repeat 3 69 0 4 1492 1404 79 26 0 chr4 119000479 119000668 -36629452 + B2_Mm2 SINE B2 1 194 -1 5 1492 744 177 16 0 chr4 119000765 119000889 -36629231 - B3 SINE B2 -90 126 1 6 1492 1231 89 0 0 chr4 119000963 119001121 -36628999 + B2_Mm2 SINE B2 1 158 -37 7 1492 261 0 0 0 chr4 119001121 119001150 -36628970 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 8 1492 1474 216 26 62 chr4 119001184 119001596 -36628524 + RMER15 LTR ERVL 28 525 -50 9 1492 2268 121 0 18 chr4 119001596 119001933 -36628187 + RLTR14 LTR ERV1 1 331 -51 1 1492 513 145 252 9 chr4 119001961 119002072 -36628048 - B1_Mus2 SINE Alu -9 138 1 1 1492 180 111 0 0 chr4 119002072 119002099 -36628021 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1492 260 278 162 20 chr4 119002100 119002199 -36627921 - RSINE1 SINE B4 -41 124 12 1 1492 536 212 58 14 chr4 119002231 119002370 -36627750 - B1F SINE Alu -2 147 3 1 1492 180 312 21 0 chr4 119002420 119002468 -36627652 + L2a LINE L2 3287 3335 -91 1 1492 204 238 11 111 chr4 119002966 119003056 -36627064 + MIRb SINE MIR 107 187 -81 1 1492 1302 94 28 0 chr4 119003107 119003288 -36626832 + B2_Mm1a SINE B2 2 187 -6 1 1492 204 40 0 0 chr4 119003882 119003907 -36626213 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1 1492 273 263 35 0 chr4 119003912 119003969 -36626151 - tRNA-Ala-GCA tRNA tRNA -12 63 5 1 1492 333 316 68 0 chr4 119004543 119004599 -36625521 - PB1 SINE Alu -2 125 63 2 1492 1453 74 16 5 chr4 119004599 119004789 -36625331 - B2_Mm2 SINE B2 -2 193 2 2 1492 1282 116 6 0 chr4 119004795 119004976 -36625144 - B2_Mm1t SINE B2 -11 182 1 2 1492 333 316 68 0 chr4 119004976 119005029 -36625091 - PB1 SINE Alu -71 56 3 2 1492 405 58 0 0 chr4 119005045 119005097 -36625023 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 2 1492 446 298 6 62 chr4 119005110 119005271 -36624849 - RSINE1 SINE B4 -10 155 4 2 1492 593 293 42 75 chr4 119005343 119005468 -36624652 - MLT1C LTR MaLR -27 440 323 2 1492 381 219 14 0 chr4 119005468 119005541 -36624579 - ID4 SINE ID -8 75 2 2 1492 593 293 42 75 chr4 119005541 119005655 -36624465 - MLT1C LTR MaLR -145 322 209 2 1492 21 0 0 0 chr4 119005675 119005696 -36624424 + AT_rich Low_complexity Low_complexity 1 21 0 2 1492 489 231 44 15 chr4 119005797 119005933 -36624187 + B4 SINE B4 66 205 -87 2 1492 201 175 0 0 chr4 119006142 119006182 -36623938 + CT-rich Low_complexity Low_complexity 3 42 0 2 1492 333 0 0 0 chr4 119008327 119008364 -36621756 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1492 781 185 0 29 chr4 119008364 119008503 -36621617 - B1_Mur1 SINE Alu -13 136 2 3 1492 21 0 0 0 chr4 119008515 119008536 -36621584 + AT_rich Low_complexity Low_complexity 1 21 0 3 1492 985 87 65 7 chr4 119008536 119008675 -36621445 + B1_Mus1 SINE Alu 2 148 0 3 1492 266 145 25 62 chr4 119008675 119008756 -36621364 + A-rich Low_complexity Low_complexity 5 82 0 3 1492 273 280 62 45 chr4 119008760 119008872 -36621248 + MLT1J LTR MaLR 326 439 -73 3 1492 562 209 152 23 chr4 119008889 119009021 -36621099 - B1F SINE Alu 0 149 1 3 1492 237 108 0 0 chr4 119009036 119009073 -36621047 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1492 722 228 237 34 chr4 119009099 119009335 -36620785 - B4A SINE B4 0 292 9 3 1492 477 252 0 9 chr4 119009691 119009799 -36620321 - PB1D10 SINE Alu -8 109 3 3 1492 382 179 139 23 chr4 119009810 119009896 -36620224 - ID_B1 SINE B4 -3 221 126 4 1492 249 250 268 0 chr4 119009812 119009924 -36620196 - B1_Mur3 SINE Alu -5 144 3 4 1492 1095 205 0 9 chr4 119010004 119010221 -36619899 + B3 SINE B2 2 216 0 4 1492 21 0 0 0 chr4 119010286 119010307 -36619813 + AT_rich Low_complexity Low_complexity 1 21 0 4 1492 423 0 0 0 chr4 119011004 119011051 -36619069 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1492 371 325 19 38 chr4 119011188 119011345 -36618775 + L1ME1 LINE L1 5962 6115 -64 4 1492 762 159 58 32 chr4 119011936 119012092 -36618028 + B3 SINE B2 57 216 0 4 1492 189 0 0 0 chr4 119012341 119012362 -36617758 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1492 1015 301 85 89 chr4 119012667 119012889 -36617231 + MER21B LTR ERV1 380 588 -275 4 1492 588 268 185 5 chr4 119012889 119013073 -36617047 + ID_B1 SINE B4 3 219 -5 4 1492 1015 301 85 89 chr4 119013073 119013310 -36616810 + MER21B LTR ERV1 589 837 -26 4 186 1348 110 16 0 chr4 119013331 119013522 -36616598 - B2_Mm2 SINE B2 0 195 2 5 1493 415 36 0 83 chr4 119013958 119014005 -36616115 - ORR1A3 LTR MaLR 0 394 352 5 1493 988 116 70 47 chr4 119014005 119014177 -36615943 - B2_Mm2 SINE B2 -19 176 1 5 1493 415 36 0 83 chr4 119014177 119014189 -36615931 - ORR1A3 LTR MaLR -43 351 340 5 1493 251 113 531 0 chr4 119014192 119014273 -36615847 - B2_Mm2 SINE B2 -8 187 64 5 1493 1198 103 11 0 chr4 119014312 119014486 -36615634 - B2_Mm1t SINE B2 -13 180 5 5 1493 1902 104 52 0 chr4 119014481 119014751 -36615369 - ORR1A3 LTR MaLR -41 285 2 5 1493 355 292 17 42 chr4 119014751 119014869 -36615251 - PB1 SINE Alu -12 115 1 5 1493 1434 132 18 0 chr4 119015054 119015274 -36614846 - URR1A DNA MER1_type -1 225 2 5 1493 336 325 117 15 chr4 119015387 119015584 -36614536 + ORR1E LTR MaLR 100 316 -43 5 1493 338 0 0 23 chr4 119015799 119015842 -36614278 + (CAA)n Simple_repeat Simple_repeat 1 42 0 5 1493 798 249 9 79 chr4 119016099 119016326 -36613794 + ID_B1 SINE B4 4 214 -10 5 1493 207 0 0 0 chr4 119016326 119016349 -36613771 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1493 261 98 0 0 chr4 119016664 119016705 -36613415 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1493 892 196 12 0 chr4 119016721 119016894 -36613226 - B3 SINE B2 -32 184 10 6 1493 295 240 17 21 chr4 119016918 119017020 -36613100 - RSINE1 SINE B4 -10 155 5 6 1493 301 271 93 0 chr4 119017241 119017370 -36612750 - L1MCa LINE L1 -5123 1385 1245 6 1493 406 321 110 36 chr4 119017660 119017961 -36612159 - L1MCa LINE L1 -5659 849 527 6 1493 463 196 45 91 chr4 119018018 119018241 -36611879 - L1MCa LINE L1 -6218 290 28 6 1493 874 194 14 47 chr4 119018463 119018645 -36611475 - B3A SINE B2 -22 176 5 6 1493 339 304 124 39 chr4 119018680 119018858 -36611262 + MER21B LTR ERV1 587 779 -84 6 1493 674 121 0 10 chr4 119019184 119019284 -36610836 + MTC LTR MaLR 1 99 -322 6 1493 508 14 29 0 chr4 119019284 119019353 -36610767 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1493 829 132 23 8 chr4 119019353 119019483 -36610637 - B1_Mur4 SINE Alu -18 132 1 6 1493 1125 150 77 10 chr4 119019483 119019676 -36610444 + MTC LTR MaLR 106 311 -110 6 1493 483 151 0 14 chr4 119019700 119019774 -36610346 - B1_Mur3 SINE Alu -13 136 64 7 1493 294 182 73 0 chr4 119019802 119019857 -36610263 + MTC LTR MaLR 361 419 0 6 1493 378 91 0 0 chr4 119020014 119020069 -36610051 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1493 226 244 28 156 chr4 119020176 119020317 -36609803 - ID_B1 SINE B4 -38 186 64 7 1493 330 140 8 66 chr4 119020371 119020440 -36609680 - B2_Mm2 SINE B2 -101 115 47 7 1493 1089 148 12 0 chr4 119020490 119020659 -36609461 - B2_Mm1t SINE B2 -21 172 2 7 1493 352 270 0 0 chr4 119020660 119020734 -36609386 - B4A SINE B4 -217 75 2 7 1493 808 205 93 44 chr4 119020984 119021098 -36609022 - B3 SINE B2 -2 214 85 7 1493 7385 41 86 0 chr4 119021098 119021999 -36608121 - RLTR13A3 LTR ERVK 0 978 1 7 1493 808 205 93 44 chr4 119021999 119022088 -36608032 - B3 SINE B2 -132 84 1 7 1493 180 258 48 0 chr4 119022697 119022759 -36607361 - MIR SINE MIR -83 179 115 7 1493 2955 43 3 0 chr4 119023193 119023538 -36606582 - ORR1A1 LTR MaLR 0 346 1 7 1493 646 258 136 47 chr4 119023887 119024261 -36605859 - MLT2B5 LTR ERVL -187 414 9 8 1493 388 272 65 0 chr4 119024270 119024439 -36605681 + L1MC LINE L1 2962 3141 -3005 8 1493 548 250 29 22 chr4 119024444 119024583 -36605537 + B1F SINE Alu 1 140 -9 8 1493 438 224 92 0 chr4 119024583 119024681 -36605439 + ID_B1 SINE B4 112 218 -6 8 1493 583 233 47 37 chr4 119024695 119024909 -36605211 + L1MC LINE L1 3139 3354 -2792 8 1493 244 329 21 35 chr4 119024987 119025129 -36604991 + L1MC LINE L1 3347 3486 -2660 8 1493 327 287 30 0 chr4 119025136 119025237 -36604883 + PB1 SINE Alu 7 110 -17 8 1493 351 248 25 0 chr4 119025253 119025355 -36604765 - B3A SINE B2 -104 112 2 8 1493 468 0 0 0 chr4 119025590 119025642 -36604478 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 8 1493 720 171 49 0 chr4 119026397 119026520 -36603600 - B1_Mur1 SINE Alu -19 130 2 8 1493 1385 76 32 0 chr4 119026786 119026971 -36603149 + B2_Mm2 SINE B2 2 192 -3 8 1493 384 169 0 0 chr4 119026995 119027072 -36603048 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1493 971 88 15 0 chr4 119027181 119027317 -36602803 + B1_Mur4 SINE Alu 2 139 -11 9 1493 526 139 0 12 chr4 119027344 119027424 -36602696 + B3A SINE B2 2 80 -118 9 1493 239 256 93 136 chr4 119027973 119028113 -36602007 + RLTR41 LTR ERV1 251 384 -62 9 1493 766 153 0 49 chr4 119028162 119028306 -36601814 + B3 SINE B2 79 215 -1 9 1493 883 283 98 4 chr4 119028461 119028727 -36601393 - B4A SINE B4 -1 291 1 9 1493 423 0 0 0 chr4 119029553 119029600 -36600520 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1493 407 219 1 1 chr4 119029618 119029695 -36600425 + RSINE1 SINE B4 1 77 -215 9 1493 462 287 112 0 chr4 119030514 119030657 -36599463 + B3A SINE B2 20 178 -20 9 1493 431 63 0 16 chr4 119030661 119030725 -36599395 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1493 443 267 14 90 chr4 119031101 119031245 -36598875 + ID_B1 SINE B4 86 218 -6 9 1493 211 348 43 0 chr4 119031200 119031269 -36598851 + B1_Mur4 SINE Alu 66 137 -13 9 1493 428 258 32 0 chr4 119031283 119031376 -36598744 - ID_B1 SINE B4 -128 96 1 1 1493 1241 81 5 93 chr4 119031669 119031874 -36598246 + B2_Mm2 SINE B2 1 187 -8 1 1493 1015 166 118 0 chr4 119032720 119032907 -36597213 - B3 SINE B2 -7 209 1 1 1493 421 215 17 22 chr4 119032936 119033117 -36597003 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1493 345 254 11 6 chr4 119033136 119033310 -36596810 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1493 639 211 12 4 chr4 119033326 119033579 -36596541 + (TG)n Simple_repeat Simple_repeat 1 255 0 1 1493 342 309 0 0 chr4 119033581 119033649 -36596471 - RSINE1 SINE B4 0 165 98 1 1493 1056 176 41 23 chr4 119033831 119034052 -36596068 - URR1B DNA MER1_type 0 225 1 1 1493 1266 83 83 0 chr4 119034510 119034690 -36595430 + B2_Mm2 SINE B2 1 195 0 1 1493 564 15 0 0 chr4 119034777 119034842 -36595278 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1493 845 194 127 6 chr4 119034924 119035105 -36595015 + B3 SINE B2 1 203 -13 1 1493 292 287 78 26 chr4 119035224 119035378 -36594742 + L1MB8 LINE L1 4899 5060 -1086 1 1493 968 151 7 0 chr4 119035438 119035584 -36594536 + B1_Mur3 SINE Alu 3 149 0 1 1493 229 177 36 48 chr4 119035586 119035651 -36594469 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 1 1493 823 144 16 0 chr4 119035651 119035776 -36594344 + B1_Mus2 SINE Alu 2 128 -19 1 1493 229 177 36 48 chr4 119035776 119035793 -36594327 + (CAAA)n Simple_repeat Simple_repeat 3 19 0 1 1493 783 304 17 48 chr4 119035815 119036109 -36594011 + B4A SINE B4 8 292 0 1 1493 350 42 21 0 chr4 119036148 119036196 -36593924 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1493 557 285 52 55 chr4 119036198 119037106 -36593014 + L1MB8 LINE L1 5121 6023 -155 1 1493 823 216 35 154 chr4 119037197 119037351 -36592769 + RLTR40 LTR ERVK 23 142 -675 1 1493 1141 95 0 0 chr4 119037351 119037498 -36592622 - B1_Mm SINE Alu 0 147 1 1 1493 823 216 35 154 chr4 119037498 119037655 -36592465 + RLTR40 LTR ERVK 143 297 -520 1 1493 313 257 14 0 chr4 119037655 119037729 -36592391 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1493 267 347 41 25 chr4 119038345 119038466 -36591654 - Tigger15a DNA TcMar -194 521 399 1 1493 254 255 10 48 chr4 119038542 119038645 -36591475 - Lx8 LINE L1 -1 7472 7374 1 1493 342 219 264 9 chr4 119038774 119038880 -36591240 + B1F SINE Alu 1 133 -16 1 1493 423 56 42 0 chr4 119039132 119039203 -36590917 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1493 616 151 102 16 chr4 119039523 119039651 -36590469 + B1_Mur1 SINE Alu 10 148 -1 1 1493 267 79 0 0 chr4 119039674 119039712 -36590408 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1493 509 231 156 25 chr4 119039718 119039878 -36590242 - B3A SINE B2 -16 182 2 1 1493 564 236 65 34 chr4 119039908 119040060 -36590060 - ID_B1 SINE B4 -49 243 81 1 1493 180 0 0 0 chr4 119040198 119040218 -36589902 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1493 27 0 0 0 chr4 119040710 119040737 -36589383 + GC_rich Low_complexity Low_complexity 1 27 0 1 1493 620 269 0 27 chr4 119041156 119041305 -36588815 + RSINE1 SINE B4 2 146 -19 1 1493 294 29 0 0 chr4 119041811 119041846 -36588274 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1493 309 239 34 0 chr4 119041868 119041956 -36588164 - BC1_Mm scRNA scRNA -47 105 15 1 1493 1080 145 108 0 chr4 119042118 119042304 -36587816 + B3 SINE B2 1 206 -10 1 1493 1612 42 5 0 chr4 119042463 119042653 -36587467 + B2_Mm1a SINE B2 3 193 0 1 1493 643 226 101 7 chr4 119043172 119043310 -36586810 - RSINE1 SINE B4 -8 157 7 1 1493 636 281 134 30 chr4 119043317 119043519 -36586601 - B4A SINE B4 -66 226 4 1 1493 344 40 0 20 chr4 119044629 119044680 -36585440 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 1493 1254 41 0 0 chr4 119044681 119044828 -36585292 - B1_Mus2 SINE Alu 0 147 1 1 1493 2818 112 50 96 chr4 119044950 119045493 -36584627 + MURVY-LTR LTR ERV1 1 518 -1 1 1493 780 114 0 0 chr4 119046589 119046720 -36583400 + (CCAA)n Simple_repeat Simple_repeat 1 131 0 1 1493 2001 108 128 9 chr4 119046988 119047182 -36582938 + ORR1B2 LTR MaLR 1 218 -149 1 1493 279 0 0 0 chr4 119047182 119047213 -36582907 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 1 1493 2001 108 128 9 chr4 119047213 119047346 -36582774 + ORR1B2 LTR MaLR 219 367 0 1 1493 677 162 93 22 chr4 119048264 119048276 -36581844 - B1_Mur3 SINE Alu 0 149 138 1 1493 300 53 0 0 chr4 119048276 119048314 -36581806 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 1 1493 677 162 93 22 chr4 119048314 119048440 -36581680 - B1_Mur3 SINE Alu -12 137 3 1 1493 229 282 101 13 chr4 119048443 119048522 -36581598 - B3A SINE B2 -5 193 108 1 1493 237 197 66 6 chr4 119049041 119049125 -36580995 + L1MC4 LINE L1 7311 7398 -644 1 1493 279 79 0 0 chr4 119049377 119049415 -36580705 + (TCC)n Simple_repeat Simple_repeat 2 39 0 1 1493 26 50 0 0 chr4 119049981 119050021 -36580099 + AT_rich Low_complexity Low_complexity 1 40 0 1 1493 1266 110 6 0 chr4 119050046 119050228 -36579892 - B2_Mm1a SINE B2 -9 184 2 1 1493 523 266 27 48 chr4 119050501 119050647 -36579473 + RSINE1 SINE B4 1 143 -22 1 1493 408 223 42 11 chr4 119051234 119051329 -36578791 + MLT1A LTR MaLR 274 371 -3 1 1493 653 262 51 86 chr4 119051366 119051658 -36578462 - B4A SINE B4 -5 287 6 1 1493 322 37 74 0 chr4 119052196 119052250 -36577870 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 1 1493 180 0 0 0 chr4 119052251 119052271 -36577849 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1493 501 238 23 16 chr4 119052271 119052375 -36577745 - RSINE1 SINE B4 -35 130 24 1 1493 1398 127 22 5 chr4 119052375 119052597 -36577523 + URR1A DNA MER1_type 1 226 0 1 1493 501 238 23 16 chr4 119052597 119052620 -36577500 - RSINE1 SINE B4 -142 23 3 1 1493 261 308 16 93 chr4 119052674 119052803 -36577317 - MIR SINE MIR -2 260 142 1 1493 2269 84 48 3 chr4 119052894 119053204 -36576916 + ORR1A2 LTR MaLR 4 327 0 1 1493 202 289 95 53 chr4 119053396 119053491 -36576629 + MIR3 SINE MIR 62 160 -48 1 1493 315 0 0 0 chr4 119054041 119054076 -36576044 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1493 462 256 8 33 chr4 119054103 119054224 -36575896 - RSINE1 SINE B4 -5 160 43 1 1493 765 236 62 17 chr4 119054219 119054396 -36575724 - B3 SINE B2 -31 185 1 1 1493 911 184 65 0 chr4 119055053 119055254 -36574866 + Lx9 LINE L1 7248 7461 -183 1 1493 453 127 0 0 chr4 119055256 119055335 -36574785 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1 1493 1231 54 0 0 chr4 119055364 119055511 -36574609 + B1_Mm SINE Alu 1 147 0 1 1493 654 145 101 58 chr4 119055604 119055743 -36574377 + B1_Mm SINE Alu 2 146 -1 1 1493 707 254 14 0 chr4 119055810 119055948 -36574172 - B1_Mur2 SINE Alu -9 140 1 1 1493 22 35 0 0 chr4 119056064 119056093 -36574027 + AT_rich Low_complexity Low_complexity 1 29 0 1 1493 733 192 50 19 chr4 119056892 119057051 -36573069 - RSINE1 SINE B4 0 165 2 1 1493 291 203 0 0 chr4 119057090 119057154 -36572966 + GA-rich Low_complexity Low_complexity 4 67 0 1 1493 1439 83 16 0 chr4 119057265 119057457 -36572663 + B2_Mm2 SINE B2 1 195 0 1 1493 451 302 0 0 chr4 119057736 119057842 -36572278 + PB1D10 SINE Alu 10 115 -2 1 1493 1154 88 0 0 chr4 119058543 119058690 -36571430 - B1_Mus1 SINE Alu 0 148 2 1 1493 521 222 102 0 chr4 119058845 119058953 -36571167 + B1F2 SINE Alu 19 137 -12 1 1493 264 297 115 81 chr4 119059512 119059721 -36570399 + LTR16B1 LTR ERVL 250 465 -15 1 1493 903 217 18 49 chr4 119059777 119060000 -36570120 + B3 SINE B2 1 216 0 1 1493 860 200 45 6 chr4 119060355 119060531 -36569589 + B3A SINE B2 1 183 -15 1 1493 389 284 119 0 chr4 119060736 119060845 -36569275 - MIR SINE MIR -95 167 46 1 1493 972 146 197 0 chr4 119061304 119061482 -36568638 - B3 SINE B2 -3 213 1 1 1493 21 0 0 0 chr4 119061697 119061718 -36568402 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 1575 203 65 48 chr4 119061833 119062231 -36567889 - MTD LTR MaLR -14 405 1 1 1493 1202 61 0 0 chr4 119062250 119062398 -36567722 - B1_Mus1 SINE Alu 0 148 1 1 1493 470 320 112 61 chr4 119062516 119062615 -36567505 + L1M4 LINE L1 4432 4533 -1613 1 1493 1508 67 0 5 chr4 119062615 119062809 -36567311 - B2_Mm2 SINE B2 -2 193 1 1 1493 470 320 112 61 chr4 119062809 119063094 -36567026 + L1M4 LINE L1 4534 4848 -1298 1 1493 1061 220 9 9 chr4 119063094 119063310 -36566810 - B3 SINE B2 0 216 1 1 1493 470 320 112 61 chr4 119063310 119063533 -36566587 + L1M4 LINE L1 4849 5071 -1075 1 1493 722 309 46 21 chr4 119063601 119063882 -36566238 + B4A SINE B4 5 292 0 1 1493 187 0 0 104 chr4 119064051 119064099 -36566021 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1 1493 1468 157 114 20 chr4 119064108 119064304 -36565816 - MTD LTR MaLR -44 375 156 1 1493 1499 164 133 72 chr4 119064304 119064679 -36565441 + RMER10B LTR ERVL 1 398 0 1 1493 1468 157 114 20 chr4 119064679 119064781 -36565339 - MTD LTR MaLR -264 155 49 1 1493 2211 103 203 23 chr4 119064781 119065170 -36564950 + RMER6B LTR ERVK 1 459 -2 1 1493 1100 62 0 65 chr4 119065487 119065642 -36564478 + B1_Mm SINE Alu 2 146 -1 1 1493 829 211 168 0 chr4 119065711 119065896 -36564224 + B3 SINE B2 1 216 0 1 1493 435 38 0 0 chr4 119066524 119066577 -36563543 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1493 2852 60 84 3 chr4 119066577 119066944 -36563176 + MTB LTR MaLR 4 400 0 1 1493 653 192 30 107 chr4 119066961 119067130 -36562990 - RSINE1 SINE B4 0 165 10 1 1493 226 326 63 32 chr4 119067449 119067544 -36562576 - B1_Mus2 SINE Alu -17 130 33 1 1493 213 368 0 0 chr4 119067554 119067630 -36562490 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1493 207 42 0 94 chr4 119067787 119067840 -36562280 + (TCC)n Simple_repeat Simple_repeat 3 50 0 1 1493 422 55 0 109 chr4 119067850 119068052 -36562068 + CT-rich Low_complexity Low_complexity 1 180 0 1 1493 613 39 0 100 chr4 119068071 119068362 -36561758 + (TCC)n Simple_repeat Simple_repeat 1 261 0 1 1493 287 235 242 42 chr4 119068372 119068492 -36561628 - B4A SINE B4 -148 144 1 2 1493 617 198 174 0 chr4 119068515 119068636 -36561484 - B1_Mur1 SINE Alu -7 142 1 2 1493 550 114 102 0 chr4 119068639 119068727 -36561393 - BC1_Mm scRNA scRNA -55 97 1 2 1493 2800 150 45 26 chr4 119068927 119069421 -36560699 + RMER20A LTR ERVK 14 516 0 2 1493 278 304 35 30 chr4 119069421 119069621 -36560499 - L1MC LINE L1 -3174 2972 2772 2 1493 1174 68 0 0 chr4 119069910 119070057 -36560063 - B1_Mus2 SINE Alu 0 147 1 2 1493 373 302 65 37 chr4 119070234 119070444 -36559676 + MIR SINE MIR 32 243 -25 2 1493 517 242 138 12 chr4 119070528 119070695 -36559425 - B3A SINE B2 -7 191 4 2 1493 717 205 37 78 chr4 119070889 119071071 -36559049 + B3 SINE B2 2 175 -41 2 1493 2585 162 38 15 chr4 119071071 119071663 -36558457 + RLTR31_Mm LTR ERVK 1 692 0 2 1493 302 208 237 10 chr4 119071727 119071814 -36558306 + PB1D9 SINE Alu 1 110 -10 2 1493 234 0 0 0 chr4 119071814 119071840 -36558280 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1493 233 119 24 0 chr4 119071856 119071898 -36558222 + (GAGAA)n Simple_repeat Simple_repeat 5 47 0 2 1493 827 169 211 17 chr4 119072590 119072770 -36557350 - B3 SINE B2 0 216 2 2 1493 633 62 0 0 chr4 119072806 119072886 -36557234 - B1_Mur4 SINE Alu -5 145 66 2 1493 491 195 14 169 chr4 119072887 119073029 -36557091 - B1_Mur1 SINE Alu -28 121 2 2 1493 22 0 0 0 chr4 119073030 119073052 -36557068 + AT_rich Low_complexity Low_complexity 1 22 0 2 1493 1037 194 46 51 chr4 119073065 119073282 -36556838 + B3 SINE B2 1 216 0 2 1493 758 221 55 12 chr4 119074219 119074384 -36555736 - B3A SINE B2 -21 177 6 2 1493 447 52 0 0 chr4 119074418 119074476 -36555644 + (GTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1493 212 200 130 58 chr4 119074476 119074535 -36555585 - PB1D9 SINE Alu -37 83 20 2 1493 263 250 0 30 chr4 119074571 119074637 -36555483 - ID4_ SINE ID -15 68 5 2 1493 189 0 0 0 chr4 119074801 119074822 -36555298 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1493 1374 156 9 0 chr4 119074822 119075034 -36555086 - B3 SINE B2 -1 215 2 2 1493 22 0 0 0 chr4 119075139 119075161 -36554959 + AT_rich Low_complexity Low_complexity 1 22 0 2 1493 750 185 232 11 chr4 119075264 119075498 -36554622 + B4A SINE B4 31 285 -7 2 1493 329 275 115 77 chr4 119075589 119075811 -36554309 + ORR1E LTR MaLR 4 248 -122 2 1493 1711 172 221 24 chr4 119075819 119076512 -36553608 + RLTR25B LTR ERVK 151 1028 0 2 1493 21 0 0 0 chr4 119076960 119076981 -36553139 + AT_rich Low_complexity Low_complexity 1 21 0 2 1493 458 240 58 0 chr4 119077055 119077159 -36552961 + PB1D9 SINE Alu 5 114 -6 2 1493 1197 59 0 7 chr4 119077165 119077319 -36552801 + B2_Mm2 SINE B2 2 154 -41 2 1493 202 0 91 0 chr4 119077326 119077359 -36552761 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1493 252 192 213 27 chr4 119077373 119077448 -36552672 + B2_Mm2 SINE B2 2 90 -105 2 1493 504 297 36 7 chr4 119077642 119077781 -36552339 + ID_B1 SINE B4 82 224 0 2 1493 271 239 84 107 chr4 119077967 119078098 -36552022 + B3 SINE B2 89 216 0 2 1493 265 89 71 0 chr4 119078168 119078224 -36551896 + GA-rich Low_complexity Low_complexity 4 63 0 2 1493 307 336 53 40 chr4 119078224 119078376 -36551744 + HAL1-3A_ME LINE L1 2284 2437 -421 2 1493 638 205 4 11 chr4 119078500 119078631 -36551489 + RMER19A LTR ERVK 1 186 -551 2 1493 1182 56 0 0 chr4 119078637 119078781 -36551339 + B1_Mm SINE Alu 1 144 -3 2 1493 735 118 0 0 chr4 119078789 119078891 -36551229 - B1_Mus1 SINE Alu -45 103 2 2 1493 317 274 0 89 chr4 119078891 119078913 -36551207 - MT2B LTR ERVL -344 257 145 2 1493 2352 106 98 0 chr4 119079672 119080031 -36550089 + ORR1B1 LTR MaLR 1 394 0 2 1493 1226 54 0 0 chr4 119080066 119080213 -36549907 - B1_Mm SINE Alu 0 147 1 2 1493 359 156 156 0 chr4 119080296 119080373 -36549747 + B3 SINE B2 1 89 -127 2 1493 2214 129 10 72 chr4 119080379 119080779 -36549341 + ORR1C1 LTR MaLR 4 378 0 2 1493 478 274 25 8 chr4 119080781 119080899 -36549221 + B3 SINE B2 90 209 -7 2 1493 511 238 28 9 chr4 119081435 119081541 -36548579 + RSINE1 SINE B4 2 109 -56 2 1493 279 0 0 0 chr4 119081557 119081588 -36548532 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1493 327 25 0 0 chr4 119081864 119081904 -36548216 + (GGA)n Simple_repeat Simple_repeat 2 41 0 2 1493 1096 66 0 14 chr4 119082048 119082186 -36547934 + B1_Mus2 SINE Alu 1 136 -11 2 1493 315 0 0 0 chr4 119082186 119082221 -36547899 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1493 237 169 97 212 chr4 119082221 119082386 -36547734 - L1MB3 LINE L1 -80 6103 5957 2 1493 734 231 132 13 chr4 119082510 119082738 -36547382 - L1MB3 LINE L1 -412 5768 5514 2 1493 589 169 57 78 chr4 119083080 119083221 -36546899 - MTD LTR MaLR 0 419 282 2 1493 940 43 0 0 chr4 119083201 119083317 -36546803 - B1_Mm SINE Alu 0 147 32 2 1493 304 297 153 48 chr4 119084148 119084272 -36545848 + MLT1J LTR MaLR 229 365 -147 2 1493 281 287 82 102 chr4 119084315 119084549 -36545571 - RSINE1 SINE B4 0 292 64 2 1493 1165 30 0 0 chr4 119084778 119084910 -36545210 + B1_Mus2 SINE Alu 5 136 -11 2 1493 252 0 0 0 chr4 119084929 119084957 -36545163 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1493 429 229 21 0 chr4 119084982 119085078 -36545042 - B1_Mur3 SINE Alu -51 98 1 2 1493 181 244 0 0 chr4 119085539 119085580 -36544540 - L3 LINE CR1 -506 3983 3943 2 1493 2639 71 92 5 chr4 119085802 119085994 -36544126 + MTB LTR MaLR 1 195 -205 2 1493 1089 73 7 0 chr4 119085994 119086130 -36543990 + B1_Mus2 SINE Alu 1 137 -10 2 1493 251 28 28 0 chr4 119086130 119086166 -36543954 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1493 2639 71 92 5 chr4 119086166 119086340 -36543780 + MTB LTR MaLR 196 397 -3 2 1493 22 56 0 0 chr4 119086983 119087019 -36543101 + AT_rich Low_complexity Low_complexity 1 36 0 2 1493 259 296 29 48 chr4 119088437 119088540 -36541580 + B1_Mm SINE Alu 47 147 0 2 1493 197 33 33 0 chr4 119088545 119088575 -36541545 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1493 943 103 28 17 chr4 119088575 119088752 -36541368 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 2 1493 442 214 62 154 chr4 119089186 119089361 -36540759 - B3 SINE B2 -11 205 27 2 1493 255 303 44 11 chr4 119090228 119090253 -36539867 - ID_B1 SINE B4 -131 93 1 2 1493 268 247 17 0 chr4 119090253 119090318 -36539802 - ID4 SINE ID -17 66 1 2 1493 183 42 0 0 chr4 119090378 119090402 -36539718 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1493 744 182 106 25 chr4 119090918 119091089 -36539031 + B3 SINE B2 26 213 -3 2 1493 215 243 12 139 chr4 119091206 119091292 -36538828 + L2c LINE L2 3311 3385 -2 2 1493 525 248 41 34 chr4 119092183 119092329 -36537791 - B1F1 SINE Alu 0 149 3 2 1493 1128 49 14 27 chr4 119092465 119092613 -36537507 + B1_Mm SINE Alu 1 146 -1 2 1493 1166 81 0 0 chr4 119092884 119093032 -36537088 - B1_Mus1 SINE Alu 0 148 1 2 1493 188 103 35 0 chr4 119093254 119093283 -36536837 + L2b LINE L2 3329 3358 -17 2 1493 463 212 76 16 chr4 119093533 119093677 -36536443 - B1_Mur1 SINE Alu -1 149 5 2 1493 521 261 217 12 chr4 119093850 119094094 -36536026 + L2c LINE L2 3058 3351 -36 2 1493 726 274 89 5 chr4 119096205 119096407 -36533713 - ID_B1 SINE B4 -4 220 2 2 1493 351 0 0 0 chr4 119097206 119097245 -36532875 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1493 232 253 0 151 chr4 119097245 119097329 -36532791 - RSINE1 SINE B4 -39 126 56 2 1493 630 243 131 43 chr4 119097297 119097602 -36532518 - RLTR15 LTR ERVK -27 332 1 2 1493 607 243 59 0 chr4 119097897 119098033 -36532087 + B1F SINE Alu 1 144 -5 2 1493 243 136 33 17 chr4 119098036 119098096 -36532024 + GA-rich Low_complexity Low_complexity 1 61 0 2 1493 250 333 20 20 chr4 119098635 119098733 -36531387 + MER58B DNA MER1_type 214 311 -30 2 1493 2541 278 142 25 chr4 119098865 119100199 -36529921 + L1M4 LINE L1 2453 3942 -2204 2 1493 4559 133 53 7 chr4 119100282 119101020 -36529100 + RMER1A Other Other 275 1024 -6 2 1493 403 302 72 31 chr4 119101036 119101231 -36528889 + L1M4 LINE L1 4023 4225 -1921 2 1493 955 263 103 62 chr4 119101235 119101604 -36528516 + MLT2B2 LTR ERVL 2 385 -130 2 1493 522 182 76 141 chr4 119101621 119101645 -36528475 - B2_Mm2 SINE B2 -10 185 166 2 1493 432 0 0 0 chr4 119101645 119101693 -36528427 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1493 673 182 76 141 chr4 119101693 119101866 -36528254 - B3A SINE B2 -28 170 1 2 1493 395 274 131 9 chr4 119101948 119102169 -36527951 + L1M4 LINE L1 4224 4471 -1675 2 1493 989 124 77 6 chr4 119102517 119102687 -36527433 - B2_Mm1t SINE B2 -1 192 11 2 1493 233 97 0 0 chr4 119102701 119102732 -36527388 + L1M4 LINE L1 4630 4660 -1486 2 1493 652 168 286 23 chr4 119102771 119102942 -36527178 - B3 SINE B2 0 216 1 2 1493 554 263 134 27 chr4 119102996 119103258 -36526862 + L1M4 LINE L1 4871 5160 -986 2 1493 387 208 143 55 chr4 119103260 119103383 -36526737 - B1_Mm SINE Alu 0 117 2 2 1493 190 274 13 52 chr4 119103414 119103491 -36526629 - L3 LINE CR1 -477 4012 3939 2 1493 360 0 0 0 chr4 119104039 119104079 -36526041 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1493 599 165 0 108 chr4 119104251 119104353 -36525767 + B1_Mur2 SINE Alu 20 110 -10 2 1493 444 82 0 0 chr4 119104353 119104414 -36525706 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 2 1493 660 221 97 12 chr4 119104462 119104731 -36525389 + L1M4 LINE L1 5204 5500 -678 2 1493 502 204 52 11 chr4 119104731 119104873 -36525247 + B1F SINE Alu 1 149 0 2 1493 1268 34 0 0 chr4 119105170 119105316 -36524804 + B1_Mm SINE Alu 1 146 -1 2 1493 216 97 0 0 chr4 119105622 119105653 -36524467 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1493 460 316 91 45 chr4 119105666 119105850 -36524270 - L1MA4 LINE L1 -888 6120 5906 3 1493 324 0 0 0 chr4 119105850 119105886 -36524234 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1493 1033 312 9 6 chr4 119105886 119106227 -36523893 - L1MA4 LINE L1 -381 5919 5591 3 1493 815 161 0 0 chr4 119106266 119106396 -36523724 - B1_Mur4 SINE Alu -19 131 2 3 1493 363 225 133 11 chr4 119106800 119106890 -36523230 - MLT1B LTR MaLR 0 390 290 3 1493 1019 238 77 59 chr4 119106989 119107225 -36522895 - B4 SINE B4 -1 291 58 3 1493 1482 211 70 95 chr4 119107225 119107743 -36522377 - RLTR16 LTR ERVK 0 505 1 3 1493 1019 238 77 59 chr4 119107743 119107792 -36522328 - B4 SINE B4 -235 57 2 3 1493 869 193 33 0 chr4 119107933 119108083 -36522037 + RSINE1 SINE B4 3 157 -8 3 1493 451 342 12 12 chr4 119108091 119108251 -36521869 - MLT1B LTR MaLR -227 163 4 3 1493 2150 160 222 48 chr4 119108282 119108992 -36521128 + RMER6C LTR ERVK 2 713 -7 3 1493 883 114 21 35 chr4 119109014 119109159 -36520961 + URR1B DNA MER1_type 83 225 0 3 1493 367 253 53 0 chr4 119109264 119109359 -36520761 + ID_B1 SINE B4 3 102 -122 3 1493 243 263 53 0 chr4 119109364 119109421 -36520699 + B1F SINE Alu 87 146 -3 3 1493 642 147 146 8 chr4 119109988 119110118 -36520002 + B1_Mur2 SINE Alu 1 148 -1 3 1493 633 281 27 41 chr4 119110253 119110472 -36519648 - ID_B1 SINE B4 -7 217 2 3 1493 255 346 0 12 chr4 119110901 119110983 -36519137 + ID4 SINE ID 3 83 0 3 1493 244 293 183 65 chr4 119111209 119111301 -36518819 - L1MC4 LINE L1 -411 7631 7550 3 1493 613 251 182 6 chr4 119111301 119111477 -36518643 - B3 SINE B2 -7 209 3 3 1493 244 293 183 65 chr4 119111477 119111614 -36518506 - L1MC4 LINE L1 -493 7549 7375 3 1493 307 294 17 52 chr4 119112674 119112789 -36517331 + L2c LINE L2 3063 3173 -214 3 1493 504 263 68 62 chr4 119112827 119112989 -36517131 - RSINE1 SINE B4 -2 163 1 3 1493 571 173 68 48 chr4 119113425 119113571 -36516549 + B1_Mur2 SINE Alu 1 149 0 3 1493 626 256 68 68 chr4 119113660 119114029 -36516091 - L1MB7 LINE L1 -23 6161 5793 3 1493 342 0 0 0 chr4 119114169 119114207 -36515913 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 3 1493 620 212 0 0 chr4 119114210 119114323 -36515797 - PB1D9 SINE Alu -7 113 1 3 1493 205 323 40 10 chr4 119114922 119115022 -36515098 + MIRc SINE MIR 152 254 -14 3 1493 836 178 13 20 chr4 119115674 119115823 -36514297 - B1_Mur2 SINE Alu 0 149 2 3 1493 270 0 0 0 chr4 119115958 119115988 -36514132 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1493 629 176 20 0 chr4 119116001 119116103 -36514017 - PB1D9 SINE Alu -5 115 12 3 1493 329 258 18 134 chr4 119116079 119116191 -36513929 - MT2B2 LTR ERVL -292 292 194 3 1493 543 216 29 0 chr4 119116120 119116222 -36513898 - PB1D10 SINE Alu -7 110 6 3 1493 308 242 121 0 chr4 119116309 119116408 -36513712 - L1ME1 LINE L1 -111 6068 5958 3 1493 567 43 0 0 chr4 119116420 119116490 -36513630 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 3 1493 879 159 7 0 chr4 119116518 119116656 -36513464 - B1_Mur4 SINE Alu -5 145 7 3 1493 504 293 74 38 chr4 119116945 119117259 -36512861 - L1ME1 LINE L1 -548 5630 5306 3 1493 1154 75 0 0 chr4 119117784 119117931 -36512189 + B1_Mus2 SINE Alu 1 147 0 3 1493 791 190 13 26 chr4 119117969 119118120 -36512000 - B1_Mur4 SINE Alu 0 150 2 3 1493 569 269 42 7 chr4 119118206 119118348 -36511772 + RSINE1 SINE B4 9 155 -10 3 1493 1672 230 12 53 chr4 119118579 119119011 -36511109 - Lx5 LINE L1 0 7050 6637 3 1493 2578 43 6 21 chr4 119119011 119119345 -36510775 - L1Md_F2 LINE L1 0 6582 6254 3 1493 804 199 0 0 chr4 119119371 119119507 -36510613 - B1_Mur1 SINE Alu -13 136 1 3 1493 202 277 0 0 chr4 119119517 119119564 -36510556 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1493 760 235 164 12 chr4 119119567 119119817 -36510303 - B4A SINE B4 -4 288 1 3 1493 329 338 20 27 chr4 119119965 119120111 -36510009 + MIRb SINE MIR 14 158 -110 3 1493 1748 137 87 16 chr4 119120140 119120480 -36509640 - ORR1B1 LTR MaLR -63 331 1 3 1493 185 348 30 71 chr4 119120858 119120957 -36509163 - MIRm SINE MIR -93 183 89 3 1493 318 126 355 0 chr4 119121097 119121207 -36508913 - B2_Mm2 SINE B2 0 195 47 3 1493 1274 97 17 0 chr4 119121239 119121415 -36508705 - B2_Mm1a SINE B2 -14 179 1 3 1493 617 219 8 0 chr4 119122046 119122165 -36507955 + ID_B1 SINE B4 105 224 0 3 1493 384 22 0 0 chr4 119122543 119122588 -36507532 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1493 370 284 175 22 chr4 119122656 119122793 -36507327 - B4A SINE B4 -132 160 3 3 1493 325 297 10 19 chr4 119123366 119123469 -36506651 - MIR SINE MIR -91 171 70 3 1493 388 330 49 33 chr4 119123489 119123733 -36506387 - L2a LINE L2 0 3426 3179 3 1493 335 73 18 0 chr4 119123804 119123859 -36506261 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1493 759 216 205 30 chr4 119124309 119124618 -36505502 - MTD LTR MaLR -12 407 35 3 1493 509 176 0 12 chr4 119125223 119125309 -36504811 - ID_B1 SINE B4 -7 217 133 3 1493 931 293 57 38 chr4 119125555 119125921 -36504199 + RMER20B LTR ERVK 234 606 -21 3 1493 227 214 0 0 chr4 119125917 119125959 -36504161 - PB1D7 SINE Alu -78 42 1 3 1493 548 264 81 108 chr4 119126647 119126801 -36503319 + L1M4b LINE L1 2990 3134 -4200 3 1493 1264 28 7 0 chr4 119126801 119126946 -36503174 + B1_Mm SINE Alu 2 147 0 3 1493 548 264 81 108 chr4 119126946 119127050 -36503070 + L1M4b LINE L1 3135 3241 -4093 3 1493 844 179 14 7 chr4 119127374 119127520 -36502600 + B1_Mur3 SINE Alu 2 148 -1 3 1493 929 203 94 0 chr4 119127741 119127943 -36502177 + ID_B1 SINE B4 2 222 -2 3 1493 700 244 37 61 chr4 119127959 119128107 -36502013 + B3 SINE B2 2 148 -68 3 1493 2384 114 64 19 chr4 119128107 119128481 -36501639 - ORR1B1 LTR MaLR 0 394 4 3 1493 700 244 37 61 chr4 119128481 119128546 -36501574 + B3 SINE B2 149 210 -6 3 1493 710 217 72 0 chr4 119128552 119128690 -36501430 - B1_Mur2 SINE Alu 0 149 2 3 1493 1356 93 0 16 chr4 119128743 119128905 -36501215 + B2_Mm2 SINE B2 2 162 -33 3 1493 180 0 0 0 chr4 119128905 119128925 -36501195 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1493 1356 93 0 16 chr4 119128925 119128948 -36501172 + B2_Mm2 SINE B2 163 184 -11 3 1493 305 302 82 68 chr4 119129015 119129219 -36500901 - L1MEg LINE L1 -4480 1604 1397 3 1493 1233 48 0 7 chr4 119129219 119129367 -36500753 - B1_Mm SINE Alu 0 147 1 3 1493 305 302 82 68 chr4 119129367 119129382 -36500738 - L1MEg LINE L1 -4688 1396 1382 3 1493 471 279 50 31 chr4 119130169 119130328 -36499792 + RSINE1 SINE B4 4 165 0 3 1493 242 350 162 38 chr4 119130588 119130903 -36499217 - L2 LINE L2 -816 2603 2250 3 1493 373 244 126 0 chr4 119131022 119131149 -36498971 - L1MC4 LINE L1 -89 7953 7811 3 1493 927 207 75 5 chr4 119131882 119132081 -36498039 - B3 SINE B2 0 216 4 3 1493 414 235 60 93 chr4 119133029 119133202 -36496918 + B3 SINE B2 58 215 -1 3 1493 191 239 65 0 chr4 119133907 119133953 -36496167 + L3 LINE CR1 3254 3302 -1187 3 1493 558 304 87 11 chr4 119134372 119134555 -36495565 - MER63B DNA AcHobo -28 408 212 3 1493 340 130 29 0 chr4 119134594 119134663 -36495457 + CT-rich Low_complexity Low_complexity 2 72 0 3 1493 653 192 33 0 chr4 119134668 119134788 -36495332 - B1_Mur1 SINE Alu -1 148 25 3 1493 1027 23 120 15 chr4 119134807 119134940 -36495180 + B1_Mus2 SINE Alu 1 147 0 3 1493 622 272 47 41 chr4 119135009 119135178 -36494942 - ID_B1 SINE B4 -54 170 1 3 1493 318 87 0 0 chr4 119136523 119136569 -36493551 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1493 828 222 179 12 chr4 119136800 119137051 -36493069 + ORR1E LTR MaLR 65 357 -2 3 1493 1092 147 93 10 chr4 119137154 119137347 -36492773 - B3 SINE B2 -5 211 3 3 1493 215 307 105 38 chr4 119138295 119138451 -36491669 - MIR SINE MIR -63 205 19 3 1493 447 286 158 30 chr4 119139153 119139387 -36490733 - MARNA DNA Mariner -59 527 264 3 1493 681 226 90 37 chr4 119141274 119141462 -36488658 + B3A SINE B2 1 198 0 3 1493 231 283 0 0 chr4 119141473 119141526 -36488594 + L2b LINE L2 3322 3374 -1 3 1493 247 318 0 0 chr4 119141583 119141646 -36488474 + ID4_ SINE ID 18 80 -3 3 1493 1303 138 9 13 chr4 119141885 119142112 -36488008 + URR1A DNA MER1_type 1 226 0 3 1493 571 284 53 69 chr4 119142548 119142737 -36487383 + RMER30 DNA MER1_type 16 201 -1 3 1493 207 0 0 0 chr4 119143027 119143050 -36487070 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1493 292 220 128 32 chr4 119143518 119143612 -36486508 - PB1D7 SINE Alu 0 120 18 3 1493 288 0 0 0 chr4 119144071 119144103 -36486017 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1493 413 314 84 56 chr4 119144180 119144359 -36485761 - B4A SINE B4 -8 284 101 3 1494 281 356 0 0 chr4 119144489 119144579 -36485541 - B4A SINE B4 -194 98 9 3 1494 760 276 98 18 chr4 119144585 119144810 -36485310 - B4A SINE B4 -49 243 1 3 1494 24 0 0 0 chr4 119145146 119145170 -36484950 + AT_rich Low_complexity Low_complexity 1 24 0 3 1494 357 195 47 35 chr4 119145180 119145265 -36484855 + B3A SINE B2 2 87 -111 3 1494 294 29 0 0 chr4 119145698 119145733 -36484387 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1494 348 111 0 0 chr4 119145735 119145798 -36484322 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 1494 239 239 84 0 chr4 119145874 119145945 -36484175 + B3 SINE B2 7 83 -133 3 1494 1473 131 14 0 chr4 119146270 119146492 -36483628 + URR1B DNA MER1_type 1 225 0 3 1494 458 291 159 45 chr4 119147445 119147816 -36482304 + MLT1E1A LTR MaLR 3 430 -250 3 1494 626 200 17 9 chr4 119148286 119148402 -36481718 - PB1D10 SINE Alu 0 117 1 3 1494 1507 168 14 24 chr4 119148410 119148703 -36481417 + MYSERV6-int LTR ERVK 8439 8728 -231 4 1494 2031 131 70 40 chr4 119149615 119149758 -36480362 + ORR1C2 LTR MaLR 1 136 -248 4 1494 1335 96 43 0 chr4 119149758 119149945 -36480175 - B2_Mm2 SINE B2 0 195 1 4 1494 2031 131 70 40 chr4 119149945 119150174 -36479946 + ORR1C2 LTR MaLR 137 384 0 4 1494 335 262 91 27 chr4 119151059 119151169 -36478951 - PB1D10 SINE Alu 0 117 1 4 1494 258 105 0 0 chr4 119151404 119151442 -36478678 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1494 326 256 53 60 chr4 119151443 119151576 -36478544 - B1F SINE Alu -16 133 2 4 1494 198 0 0 0 chr4 119151625 119151647 -36478473 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1494 243 0 0 0 chr4 119151647 119151673 -36478447 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1494 1270 41 0 0 chr4 119151678 119151824 -36478296 - B1_Mm SINE Alu 0 147 2 4 1494 268 200 147 0 chr4 119152119 119152194 -36477926 + L2a LINE L2 3333 3418 -8 4 1494 425 309 10 125 chr4 119152591 119152783 -36477337 + ID_B1 SINE B4 6 175 -49 4 1494 585 268 97 126 chr4 119153884 119153979 -36476141 + MER2 DNA MER2_type 72 158 -187 4 1494 317 284 0 12 chr4 119153979 119154061 -36476059 + ID4_ SINE ID 2 82 -1 4 1494 585 268 97 126 chr4 119154061 119154243 -36475877 + MER2 DNA MER2_type 159 341 -4 4 1494 2151 189 28 40 chr4 119154871 119155142 -36474978 - MTD LTR MaLR 0 419 163 4 1494 180 0 0 0 chr4 119155142 119155162 -36474958 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1494 2151 189 28 40 chr4 119155162 119155314 -36474806 - MTD LTR MaLR -257 162 2 4 1494 440 229 10 40 chr4 119155314 119155409 -36474711 + PB1D10 SINE Alu 22 113 -4 4 1494 225 196 20 21 chr4 119155529 119155682 -36474438 + (CA)n Simple_repeat Simple_repeat 1 152 0 4 1494 193 324 105 29 chr4 119156200 119156305 -36473815 - L2b LINE L2 -5 3370 3258 4 1494 274 305 36 62 chr4 119156384 119156496 -36473624 - LTR16C LTR ERVL -2 487 379 4 1494 189 0 0 0 chr4 119156624 119156645 -36473475 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1494 1001 204 24 24 chr4 119157482 119157688 -36472432 + MTD LTR MaLR 2 207 -212 4 1494 768 222 33 28 chr4 119157691 119157872 -36472248 + B3A SINE B2 1 182 -16 4 1494 223 358 0 29 chr4 119157883 119158021 -36472099 + (CA)n Simple_repeat Simple_repeat 1 134 0 4 1494 641 181 45 8 chr4 119158089 119158223 -36471897 + MTD LTR MaLR 281 419 0 4 1494 212 365 22 17 chr4 119158225 119158406 -36471714 + L2 LINE L2 437 618 -2801 4 1494 2184 286 24 32 chr4 119159590 119160336 -36469784 + Lx9 LINE L1 6052 6948 -696 4 1494 1649 178 31 15 chr4 119160453 119160778 -36469342 - ORR1B1 LTR MaLR -13 381 52 4 1494 557 137 73 44 chr4 119160789 119160926 -36469194 - ORR1B1 LTR MaLR -251 143 3 4 1494 290 250 164 31 chr4 119160949 119161077 -36469043 + L2a LINE L2 3252 3396 -30 4 1494 194 318 124 45 chr4 119161110 119161199 -36468921 + L2b LINE L2 3266 3361 -14 4 1494 556 216 1 4 chr4 119161342 119161472 -36468648 - B1F2 SINE Alu -17 132 5 4 1494 238 211 0 0 chr4 119161484 119161522 -36468598 - ID_B1 SINE B4 -3 221 184 4 1494 257 215 0 58 chr4 119161520 119161589 -36468531 + PB1D10 SINE Alu 53 117 0 4 1494 226 262 16 32 chr4 119161594 119161657 -36468463 + ID2 SINE ID 3 64 -19 4 1494 262 268 85 0 chr4 119161716 119161810 -36468310 + ID4_ SINE ID 1 102 -50 4 1494 195 339 157 63 chr4 119162134 119162402 -36467718 - L2c LINE L2 -12 3375 3083 4 1494 195 42 0 0 chr4 119162830 119162854 -36467266 + (CCCCAG)n Simple_repeat Simple_repeat 6 29 0 4 1494 518 188 10 30 chr4 119162911 119163000 -36467120 + B1_Mur2 SINE Alu 49 137 -12 4 1494 186 71 0 0 chr4 119163000 119163028 -36467092 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 4 1494 1071 174 71 5 chr4 119163486 119163683 -36466437 + B3 SINE B2 1 210 -6 4 1494 255 122 0 0 chr4 119165193 119165242 -36464878 + (CCG)n Simple_repeat Simple_repeat 2 50 0 4 1494 582 79 0 0 chr4 119165842 119165931 -36464189 + (TTTA)n Simple_repeat Simple_repeat 3 91 0 4 1494 480 213 159 32 chr4 119165957 119166083 -36464037 - RSINE1 SINE B4 -22 143 2 4 1494 622 172 16 237 chr4 119166192 119166295 -36463825 - B1_Mur4 SINE Alu 0 148 85 4 1494 2577 41 84 3 chr4 119166295 119166615 -36463505 + ORR1A1 LTR MaLR 1 346 0 4 1494 622 183 48 32 chr4 119166615 119166701 -36463419 - B1_Mur4 SINE Alu -64 86 1 4 1494 225 163 0 44 chr4 119166873 119166918 -36463202 + T-rich Low_complexity Low_complexity 2 44 0 4 1494 537 163 0 0 chr4 119167267 119167353 -36462767 - PB1D9 SINE Alu -17 103 18 4 1494 288 298 68 61 chr4 119167272 119167404 -36462716 - ID_B1 SINE B4 -48 176 44 4 1494 683 231 13 13 chr4 119167372 119167521 -36462599 - ID_B1 SINE B4 0 224 76 4 1494 263 345 62 28 chr4 119167876 119168055 -36462065 + ORR1E LTR MaLR 1 185 -174 4 1494 229 358 42 0 chr4 119168388 119168508 -36461612 - MLT1I LTR MaLR -46 564 440 4 1494 236 311 112 66 chr4 119169247 119169443 -36460677 - MLT1I LTR MaLR -176 235 31 4 1494 814 233 93 79 chr4 119169563 119169843 -36460277 + B4A SINE B4 3 286 -6 4 1494 225 0 0 0 chr4 119170352 119170377 -36459743 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 4 1494 369 0 0 0 chr4 119170650 119170691 -36459429 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1494 1275 14 0 0 chr4 119170695 119170837 -36459283 - B1_Mus1 SINE Alu -6 142 1 4 1494 553 252 45 13 chr4 119171252 119171409 -36458711 + RSINE1 SINE B4 2 163 -2 4 1494 823 308 91 19 chr4 119171814 119172175 -36457945 + MER21B LTR ERV1 425 811 -52 4 1494 486 191 46 37 chr4 119172360 119172469 -36457651 + ID_B1 SINE B4 82 191 -33 4 1494 445 255 0 39 chr4 119172488 119172590 -36457530 + B3 SINE B2 47 144 -72 4 1494 306 0 0 0 chr4 119172591 119172625 -36457495 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1494 721 264 75 9 chr4 119172706 119172920 -36457200 - MER2 DNA MER2_type -14 331 104 4 1494 1253 157 23 9 chr4 119173600 119173819 -36456301 - URR1B DNA MER1_type -3 222 1 4 1494 518 201 7 61 chr4 119175297 119175445 -36454675 - Lx4A LINE L1 0 7058 6919 4 1494 453 187 18 36 chr4 119175474 119175485 -36454635 - PB1D10 SINE Alu 0 117 107 4 1494 1138 82 0 0 chr4 119175485 119175631 -36454489 - B1_Mus2 SINE Alu 0 147 2 4 1494 453 187 18 36 chr4 119175631 119175730 -36454390 - PB1D10 SINE Alu -11 106 9 4 1494 257 258 0 0 chr4 119175677 119175739 -36454381 - B4A SINE B4 -146 146 85 4 1494 546 218 0 0 chr4 119175783 119175884 -36454236 + PB1D10 SINE Alu 1 101 -16 4 1494 732 256 40 11 chr4 119175960 119176134 -36453986 + B3A SINE B2 2 180 -18 4 1494 29 28 0 0 chr4 119176145 119176181 -36453939 + AT_rich Low_complexity Low_complexity 1 36 0 4 1494 250 324 38 82 chr4 119176482 119176640 -36453480 + Charlie22a DNA MER1_type 144 294 -197 4 1494 1029 201 28 28 chr4 119176922 119177137 -36452983 - B3 SINE B2 0 216 2 4 1494 877 40 56 8 chr4 119177206 119177332 -36452788 - B2_Mm2 SINE B2 -7 188 57 4 1494 1318 78 10 5 chr4 119177319 119177512 -36452608 + MT2C_Mm LTR ERVL 282 475 0 4 1494 4266 49 2 0 chr4 119177540 119178048 -36452072 - L1_Mus1 LINE L1 -4 6563 6055 4 1494 251 270 98 107 chr4 119178143 119178200 -36451920 - MLT1J LTR MaLR -123 389 336 4 1494 2955 107 86 44 chr4 119178200 119178698 -36451422 - MURVY-LTR LTR ERV1 0 519 1 4 1494 251 270 98 107 chr4 119178698 119178864 -36451256 - MLT1J LTR MaLR -177 335 168 4 1494 391 113 13 78 chr4 119180277 119180295 -36449825 - RMER16 LTR ERVK -53 480 467 4 1494 1598 43 0 0 chr4 119180295 119180483 -36449637 + B2_Mm1a SINE B2 2 189 -4 4 1494 391 113 13 78 chr4 119180483 119180541 -36449579 - RMER16 LTR ERVK -67 466 409 4 1494 225 139 0 0 chr4 119180543 119180586 -36449534 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 1494 3074 20 0 25 chr4 119180770 119181125 -36448995 - ORR1A0 LTR MaLR 0 346 1 4 1494 243 186 97 75 chr4 119181256 119181349 -36448771 + RLTR25B LTR ERVK 415 509 -519 4 1494 721 48 28 19 chr4 119181287 119181393 -36448727 + B1_Mus2 SINE Alu 40 146 -1 4 1494 420 200 44 0 chr4 119181442 119181532 -36448588 + PB1 SINE Alu 7 100 -27 4 1494 625 201 212 28 chr4 119181618 119181797 -36448323 - B3 SINE B2 -4 212 1 4 1494 299 261 0 0 chr4 119181833 119181898 -36448222 - ID4_ SINE ID -7 76 12 4 1494 742 202 6 6 chr4 119182030 119182209 -36447911 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1494 1639 37 0 16 chr4 119182715 119182909 -36447211 - B2_Mm1a SINE B2 -2 191 1 4 1494 439 312 140 0 chr4 119182965 119183122 -36446998 - B3A SINE B2 -19 179 1 4 1494 241 253 0 122 chr4 119183741 119183831 -36446289 + ORR1E LTR MaLR 20 98 -281 4 1494 264 314 82 73 chr4 119183911 119184117 -36446003 + ORR1E LTR MaLR 97 304 -55 4 1494 280 265 7 56 chr4 119184133 119184277 -36445843 + G-rich Low_complexity Low_complexity 2 138 0 4 1494 1091 166 44 5 chr4 119184313 119184519 -36445601 + B3 SINE B2 3 216 0 4 1494 1345 80 10 21 chr4 119184521 119184713 -36445407 + B2_Mm2 SINE B2 3 192 -3 4 1494 1150 227 120 15 chr4 119185764 119186097 -36444023 + ORR1D2 LTR MaLR 5 379 0 4 1494 234 220 20 0 chr4 119186387 119186437 -36443683 + MER2B DNA MER2_type 182 232 -104 4 1494 643 194 101 29 chr4 119186477 119186615 -36443505 - B1_Mur2 SINE Alu 0 149 2 4 1494 726 12 0 0 chr4 119186634 119186717 -36443403 + (TTCCC)n Simple_repeat Simple_repeat 3 85 0 4 1494 790 38 9 9 chr4 119186717 119186824 -36443296 + (TTCTC)n Simple_repeat Simple_repeat 3 109 0 4 1494 1388 173 86 0 chr4 119186896 119187174 -36442946 + MTD LTR MaLR 112 413 -6 4 1494 194 91 0 29 chr4 119187223 119187257 -36442863 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1494 318 106 0 0 chr4 119187735 119187782 -36442338 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1494 3522 28 2 0 chr4 119187897 119188292 -36441828 + MTA_Mm LTR MaLR 1 396 0 4 1494 278 266 49 22 chr4 119188418 119188529 -36441591 - AluF_3 SINE Alu -112 199 1 5 1494 3075 67 9 46 chr4 119188728 119189165 -36440955 - BGLII LTR ERVK 0 421 1 5 1494 1194 184 14 10 chr4 119189314 119189522 -36440598 - B3 SINE B2 -6 210 2 5 1494 770 129 114 0 chr4 119189849 119189981 -36440139 - B1_Mur3 SINE Alu -1 148 2 5 1494 23 68 0 0 chr4 119190876 119190920 -36439200 + AT_rich Low_complexity Low_complexity 1 44 0 5 1494 23 78 0 0 chr4 119191024 119191075 -36439045 + AT_rich Low_complexity Low_complexity 1 51 0 5 1494 21 104 0 0 chr4 119191447 119191524 -36438596 + AT_rich Low_complexity Low_complexity 1 77 0 5 1494 805 19 0 0 chr4 119191544 119191647 -36438473 - B1_Mus2 SINE Alu -43 104 2 5 1494 274 211 17 9 chr4 119191548 119191663 -36438457 - ORR1B1-int LTR MaLR -762 747 632 5 1494 333 0 0 0 chr4 119192833 119192870 -36437250 + (ATTG)n Simple_repeat Simple_repeat 1 37 0 5 1494 481 109 120 0 chr4 119192872 119192964 -36437156 - B1_Mur2 SINE Alu -19 130 28 5 1494 2224 121 9 6 chr4 119193166 119193514 -36436606 - ORR1B1 LTR MaLR -4 390 42 5 1494 259 44 44 0 chr4 119194020 119194065 -36436055 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1494 244 250 0 0 chr4 119194365 119194413 -36435707 + B3A SINE B2 70 117 -81 5 1494 372 308 91 29 chr4 119194832 119195106 -36435014 + B4A SINE B4 1 291 -1 5 1494 930 273 90 22 chr4 119195127 119195483 -36434637 + MLT1D LTR MaLR 117 496 -9 5 1494 471 286 80 110 chr4 119195779 119196078 -36434042 + B4 SINE B4 2 291 -1 5 1494 665 249 62 42 chr4 119196105 119196365 -36433755 - MER33 DNA MER1_type -58 266 2 5 1494 303 265 28 56 chr4 119197232 119197340 -36432780 + MIRb SINE MIR 3 107 -161 5 1494 773 147 61 15 chr4 119197367 119197498 -36432622 - B1_Mur2 SINE Alu -12 137 1 5 1494 261 0 0 0 chr4 119197519 119197548 -36432572 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1494 878 311 110 49 chr4 119197696 119197892 -36432228 + Lx8 LINE L1 5113 5322 -525 5 1494 1498 71 5 0 chr4 119197892 119198076 -36432044 - B2_Mm1t SINE B2 -7 186 2 5 1494 608 132 0 0 chr4 119198076 119198167 -36431953 - 4.5SRNA scRNA scRNA -3 91 1 5 1494 878 300 72 50 chr4 119198167 119198814 -36431306 + Lx8 LINE L1 5323 6027 -1617 5 1494 991 304 63 128 chr4 119198991 119200156 -36429964 + L1_Mur3 LINE L1 4184 5272 -608 5 1494 482 266 0 72 chr4 119200182 119200320 -36429800 + ID_B1 SINE B4 86 213 -11 5 1494 389 37 37 0 chr4 119200321 119200375 -36429745 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 5 1494 583 101 345 35 chr4 119200451 119200564 -36429556 + B1_Mus1 SINE Alu 1 148 0 5 1494 24 32 0 0 chr4 119200566 119200597 -36429523 + AT_rich Low_complexity Low_complexity 1 31 0 5 1494 848 84 0 0 chr4 119200604 119200711 -36429409 + U6 snRNA snRNA 1 107 0 5 1494 1017 282 81 75 chr4 119200720 119201121 -36428999 + L1MA4A LINE L1 5386 5798 -505 5 1494 3084 58 0 0 chr4 119201121 119201497 -36428623 - L1_Mus1 LINE L1 0 6567 6192 5 1494 1017 282 81 75 chr4 119201497 119201625 -36428495 + L1MA4A LINE L1 5799 5918 -385 5 1494 592 287 148 25 chr4 119202188 119202506 -36427614 - ORR1E LTR MaLR -2 357 1 5 1494 232 294 105 56 chr4 119202673 119202835 -36427285 - LTR16A LTR ERVL -8 443 274 5 1494 755 273 50 54 chr4 119203934 119204247 -36425873 - MT2B LTR ERVL -75 526 160 5 1494 214 368 30 46 chr4 119204283 119204414 -36425706 + L2b LINE L2 3061 3189 -186 5 1494 280 250 54 0 chr4 119204462 119204554 -36425566 - MIR SINE MIR -75 187 91 5 1494 211 250 0 0 chr4 119204815 119204855 -36425265 - ID4_ SINE ID -8 75 36 5 1494 1223 41 0 7 chr4 119205205 119205352 -36424768 + B1_Mus2 SINE Alu 1 146 -1 5 1494 1697 26 0 0 chr4 119205630 119205822 -36424298 + B2_Mm1a SINE B2 2 193 0 5 1494 642 46 15 1 chr4 119206451 119206559 -36423561 + B1_Mus2 SINE Alu 1 150 0 5 1494 191 316 18 0 chr4 119206597 119206654 -36423466 + MIRb SINE MIR 20 77 -191 5 1494 246 105 0 0 chr4 119207215 119207253 -36422867 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1494 25 0 0 0 chr4 119208810 119208835 -36421285 + AT_rich Low_complexity Low_complexity 1 25 0 5 1494 261 0 0 0 chr4 119209201 119209230 -36420890 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 1494 987 41 81 0 chr4 119209230 119209353 -36420767 - B1_Mus1 SINE Alu -12 136 4 5 1494 512 147 4 91 chr4 119209380 119209545 -36420575 - MT2B2 LTR ERVL -3 598 484 5 1494 1919 65 75 3 chr4 119209546 119209839 -36420281 - MT2B2 LTR ERVL -270 314 1 5 1494 1102 82 7 0 chr4 119210035 119210181 -36419939 - B1_Mus1 SINE Alu -1 147 1 5 1494 379 278 62 0 chr4 119210489 119210586 -36419534 - PB1D10 SINE Alu -1 116 14 5 1494 285 279 162 54 chr4 119210619 119210767 -36419353 - RSINE1 SINE B4 0 165 2 5 1494 213 39 0 0 chr4 119212300 119212326 -36417794 + (CCG)n Simple_repeat Simple_repeat 2 27 0 5 1494 364 297 68 0 chr4 119214214 119214332 -36415788 - ID_B1 SINE B4 -9 215 90 5 1494 1293 20 0 0 chr4 119214908 119215055 -36415065 - B1_Mus2 SINE Alu 0 147 1 5 1494 845 153 20 20 chr4 119215479 119215626 -36414494 - B1_Mus1 SINE Alu 0 148 2 5 1494 3542 20 2 0 chr4 119215680 119216075 -36414045 + MTA_Mm LTR MaLR 1 396 0 5 1494 219 250 15 15 chr4 119216369 119216434 -36413686 + B1_Mus1 SINE Alu 11 75 -73 5 1494 291 114 0 0 chr4 119216511 119216555 -36413565 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 5 1494 332 259 163 39 chr4 119216555 119216636 -36413484 - L1MB7 LINE L1 -172 6012 5925 5 1494 605 185 123 0 chr4 119216636 119216766 -36413354 - B1_Mur2 SINE Alu 0 149 4 5 1494 332 259 163 39 chr4 119216766 119216917 -36413203 - L1MB7 LINE L1 -260 5924 5752 5 1494 355 271 45 36 chr4 119217366 119217477 -36412643 - B1_Mur2 SINE Alu -36 113 2 5 1494 201 328 98 19 chr4 119217651 119217833 -36412287 - MIRb SINE MIR -60 208 6 5 1494 1098 53 0 0 chr4 119218887 119219020 -36411100 - B1_Mus2 SINE Alu -14 133 1 5 1494 319 327 19 0 chr4 119219023 119219127 -36410993 + B4A SINE B4 11 116 -176 5 1494 318 346 26 62 chr4 119219127 119219214 -36410906 + B3A SINE B2 11 194 -4 5 1494 593 276 43 37 chr4 119219220 119219382 -36410738 + RSINE1 SINE B4 3 165 0 5 1494 3205 24 42 8 chr4 119219585 119219968 -36410152 + MTA_Mm LTR MaLR 1 396 0 5 1494 26 0 0 0 chr4 119220310 119220336 -36409784 + AT_rich Low_complexity Low_complexity 1 26 0 5 1494 610 213 0 47 chr4 119222106 119222234 -36407886 + RSINE1 SINE B4 15 136 -29 5 1494 210 105 0 0 chr4 119222312 119222350 -36407770 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1494 1165 62 0 7 chr4 119222350 119222497 -36407623 - B1_Mus2 SINE Alu 0 147 2 5 1494 1387 64 6 0 chr4 119222508 119222681 -36407439 - B2_Mm1a SINE B2 -19 174 1 5 1494 474 310 9 0 chr4 119222683 119222799 -36407321 - PB1D10 SINE Alu 0 117 1 5 1494 1018 115 7 33 chr4 119223271 119223424 -36406696 - B1_Mur4 SINE Alu 0 150 2 5 1494 467 210 34 68 chr4 119223632 119223780 -36406340 + B1F SINE Alu 6 148 -1 5 1494 204 355 32 11 chr4 119223829 119223923 -36406197 - L3 LINE CR1 -240 4249 4154 5 1494 890 77 131 0 chr4 119224279 119224409 -36405711 + B1_Mus1 SINE Alu 2 148 0 5 1494 207 0 0 0 chr4 119224409 119224432 -36405688 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1494 201 279 98 0 chr4 119224588 119224649 -36405471 - L3 LINE CR1 -348 4141 4075 5 1494 544 224 0 45 chr4 119224649 119224761 -36405359 - B1_Mur2 SINE Alu -1 148 42 5 1494 344 284 190 19 chr4 119224789 119224994 -36405126 - L3 LINE CR1 -407 4082 3843 5 1494 447 277 38 8 chr4 119225245 119225376 -36404744 + B1F1 SINE Alu 1 135 -14 5 1494 26 30 0 0 chr4 119225572 119225605 -36404515 + AT_rich Low_complexity Low_complexity 1 33 0 5 1494 527 192 101 58 chr4 119225609 119225747 -36404373 - B1_Mur1 SINE Alu -5 144 1 5 1494 189 0 0 0 chr4 119225754 119225775 -36404345 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1494 474 65 0 0 chr4 119225787 119225849 -36404271 + (TCCCC)n Simple_repeat Simple_repeat 4 65 0 5 1494 1190 56 0 0 chr4 119225859 119226001 -36404119 - B1_Mus1 SINE Alu -6 142 1 5 1494 231 114 0 0 chr4 119226010 119226045 -36404075 + (TTC)n Simple_repeat Simple_repeat 2 36 0 5 1494 1200 61 0 0 chr4 119226050 119226197 -36403923 - B1_Mm SINE Alu 0 147 1 5 1494 352 302 120 73 chr4 119226923 119227198 -36402922 - B4A SINE B4 0 292 5 5 1494 21 0 0 0 chr4 119227373 119227394 -36402726 + AT_rich Low_complexity Low_complexity 1 21 0 5 1494 854 285 49 55 chr4 119227457 119227784 -36402336 + MTE2b LTR MaLR 55 379 0 5 1494 348 271 83 0 chr4 119227789 119227885 -36402235 - B1F SINE Alu -45 104 1 5 1494 328 288 92 46 chr4 119228236 119228367 -36401753 - B1_Mur2 SINE Alu -12 137 1 5 1494 260 263 12 73 chr4 119228514 119228527 -36401593 - ID SINE ID -140 84 8 5 1494 323 224 0 29 chr4 119228527 119228596 -36401524 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 5 1494 790 189 43 7 chr4 119229126 119229265 -36400855 + B1_Mur4 SINE Alu 1 144 -6 5 1494 39 0 0 0 chr4 119229291 119229330 -36400790 + AT_rich Low_complexity Low_complexity 1 39 0 5 1494 227 179 119 0 chr4 119230364 119230431 -36399689 - Lx8 LINE L1 0 7473 7399 5 1494 558 227 56 117 chr4 119230713 119231032 -36399088 - L1MB8 LINE L1 -24 6160 5888 5 1494 1132 74 0 7 chr4 119231032 119231181 -36398939 - B1_Mus1 SINE Alu 0 148 1 5 1494 519 237 98 142 chr4 119231181 119231318 -36398802 - L1MB8 LINE L1 -297 5887 5724 5 1494 211 209 47 0 chr4 119231553 119231596 -36398524 - RSINE1 SINE B4 -77 88 44 5 1494 329 265 219 0 chr4 119231633 119231784 -36398336 - L1M5 LINE L1 -724 5438 5255 5 1494 286 277 48 0 chr4 119232086 119232169 -36397951 - L2a LINE L2 -62 3364 3278 6 1494 390 326 73 66 chr4 119232286 119232545 -36397575 + MER102c DNA MER1_type 56 316 -15 6 1494 531 134 157 16 chr4 119233956 119234077 -36396043 + B1_Mur2 SINE Alu 2 139 -10 6 1494 423 324 82 70 chr4 119234245 119234577 -36395543 - L2a LINE L2 -150 3276 2942 6 1494 684 284 26 87 chr4 119234643 119234664 -36395456 - MYSERV-int LTR ERVK -2451 4099 4085 6 1494 952 145 49 32 chr4 119234664 119234849 -36395271 - B2_Mm2 SINE B2 -7 188 1 6 1494 684 284 26 87 chr4 119234849 119235174 -36394946 - MYSERV-int LTR ERVK -2466 4084 3774 6 1494 27 29 0 0 chr4 119235344 119235378 -36394742 + AT_rich Low_complexity Low_complexity 1 34 0 6 1494 228 122 0 0 chr4 119235417 119235458 -36394662 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1494 24 0 0 0 chr4 119235616 119235640 -36394480 + AT_rich Low_complexity Low_complexity 1 24 0 6 1494 28 46 0 44 chr4 119235649 119235717 -36394403 + AT_rich Low_complexity Low_complexity 1 65 0 6 1494 2327 162 27 25 chr4 119236241 119236558 -36393562 - RLTR11B LTR ERVK 0 453 136 6 1494 1617 21 16 0 chr4 119236558 119236745 -36393375 - B2_Mm1a SINE B2 -3 190 1 6 1494 2327 162 27 25 chr4 119236745 119236869 -36393251 - RLTR11B LTR ERVK -318 135 11 6 1494 414 0 0 0 chr4 119237737 119237783 -36392337 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1494 916 288 60 29 chr4 119237853 119238166 -36391954 - MTE2b LTR MaLR -9 370 2 6 1494 332 324 9 0 chr4 119238325 119238436 -36391684 + PB1D10 SINE Alu 1 112 -5 6 1494 1179 77 22 3 chr4 119238586 119238750 -36391370 - B2_Mm2 SINE B2 -8 187 27 6 1494 180 0 0 0 chr4 119238750 119238770 -36391350 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 6 1494 559 264 111 77 chr4 119238770 119238801 -36391319 - B3A SINE B2 -172 26 1 6 1494 297 262 60 0 chr4 119239124 119239208 -36390912 - B1_Mur1 SINE Alu -10 139 51 6 1494 229 270 16 0 chr4 119239619 119239682 -36390438 - ID4_ SINE ID -18 65 2 6 1494 315 243 87 10 chr4 119239686 119239790 -36390330 - PB1D9 SINE Alu -8 112 1 6 1494 240 35 0 0 chr4 119239949 119239978 -36390142 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 1494 231 231 0 37 chr4 119241109 119241163 -36388957 + C-rich Low_complexity Low_complexity 4 55 0 6 1494 431 227 71 20 chr4 119241290 119241326 -36388794 + B4A SINE B4 1 35 -257 6 1494 207 0 0 0 chr4 119241326 119241349 -36388771 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1494 431 227 71 20 chr4 119241349 119241394 -36388726 + B4A SINE B4 36 87 -205 6 1494 342 274 12 0 chr4 119241394 119241478 -36388642 + B3 SINE B2 4 88 -128 6 1494 382 290 104 18 chr4 119241656 119241781 -36388339 - PB1D7 SINE Alu -8 141 4 6 1494 784 160 0 0 chr4 119242152 119242271 -36387849 - B1_Mus1 SINE Alu 0 148 30 6 1494 1246 47 0 0 chr4 119243646 119243794 -36386326 - B1_Mus1 SINE Alu 0 148 1 6 1494 281 215 35 53 chr4 119244411 119244524 -36385596 + CT-rich Low_complexity Low_complexity 4 114 0 6 1494 312 268 68 38 chr4 119244641 119244773 -36385347 - MIRc SINE MIR -112 156 21 6 1494 369 288 0 0 chr4 119244864 119244944 -36385176 - ID4 SINE ID -2 81 2 6 1494 249 33 0 0 chr4 119245386 119245416 -36384704 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 6 1494 467 134 0 12 chr4 119245726 119245809 -36384311 + (TCCCC)n Simple_repeat Simple_repeat 4 85 0 6 1494 258 326 104 42 chr4 119246566 119246710 -36383410 - RSINE1 SINE B4 -10 155 3 6 1494 805 263 206 9 chr4 119246895 119247467 -36382653 - L1MC4a LINE L1 0 7882 7198 6 1494 403 235 9 38 chr4 119247532 119247638 -36382482 + B1_Mur4 SINE Alu 27 129 -21 6 1494 573 288 124 11 chr4 119247662 119247848 -36382272 + B3 SINE B2 6 212 -4 6 1494 367 273 56 70 chr4 119247952 119248094 -36382026 - B1F2 SINE Alu -7 142 3 6 1494 21 0 0 0 chr4 119248407 119248428 -36381692 + AT_rich Low_complexity Low_complexity 1 21 0 6 1494 240 130 0 0 chr4 119248949 119248995 -36381125 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1494 1149 62 0 0 chr4 119248997 119249141 -36380979 - B1_Mus2 SINE Alu -3 144 1 6 1494 366 318 52 34 chr4 119249252 119249488 -36380632 - MIRb SINE MIR -28 240 5 6 1494 1149 211 0 0 chr4 119249640 119249844 -36380276 - B3 SINE B2 -9 207 4 6 1494 302 215 46 0 chr4 119249947 119250012 -36380108 + BC1_Mm scRNA scRNA 7 74 -78 6 1494 279 0 0 0 chr4 119250064 119250095 -36380025 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 6 1494 965 124 20 7 chr4 119250095 119250231 -36379889 - B1_Mur4 SINE Alu -10 140 2 6 1494 559 229 19 83 chr4 119251548 119251705 -36378415 + B1_Mur2 SINE Alu 1 147 -2 6 1494 1073 82 34 0 chr4 119251735 119251882 -36378238 + B2_Mm2 SINE B2 2 153 -42 6 1494 252 0 0 0 chr4 119251882 119251910 -36378210 + (CATA)n Simple_repeat Simple_repeat 4 31 0 6 1494 251 247 0 0 chr4 119251953 119252034 -36378086 + L1_Rod LINE L1 4200 4280 -1567 6 1494 264 167 0 0 chr4 119252044 119252092 -36378028 + T-rich Low_complexity Low_complexity 1 48 0 6 1494 1041 67 15 0 chr4 119252105 119252240 -36377880 - B1_Mm SINE Alu -10 137 1 6 1494 446 284 19 10 chr4 119252269 119252475 -36377645 + L1_Mm LINE L1 4316 4523 -1360 6 1494 254 140 0 23 chr4 119252481 119252525 -36377595 - URR1B DNA MER1_type -43 182 140 6 1494 1072 75 0 52 chr4 119252525 119252679 -36377441 + B1_Mus2 SINE Alu 2 147 0 6 1494 319 309 54 9 chr4 119252795 119252906 -36377214 + B3A SINE B2 1 116 -82 6 1494 210 191 0 0 chr4 119253147 119253189 -36376931 + CT-rich Low_complexity Low_complexity 1 42 0 6 1494 233 294 176 0 chr4 119253704 119253789 -36376331 - MLT1A0 LTR MaLR -249 116 17 6 1494 27 29 0 0 chr4 119254031 119254065 -36376055 + AT_rich Low_complexity Low_complexity 1 34 0 6 1494 281 301 62 47 chr4 119254090 119254170 -36375950 - RSINE1 SINE B4 -28 137 58 6 1494 192 77 0 0 chr4 119254170 119254196 -36375924 + (CAGTA)n Simple_repeat Simple_repeat 4 29 0 6 1494 281 301 62 47 chr4 119254196 119254244 -36375876 - RSINE1 SINE B4 -108 57 8 6 1494 347 0 23 0 chr4 119254422 119254465 -36375655 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1494 1150 51 0 0 chr4 119254465 119254603 -36375517 - B1_Mus2 SINE Alu -9 138 1 6 1494 1203 34 0 39 chr4 119254846 119254999 -36375121 + B1_Mus2 SINE Alu 1 147 0 6 1494 201 147 0 0 chr4 119254999 119255033 -36375087 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1494 606 234 54 32 chr4 119255803 119256030 -36374090 - Lx7 LINE L1 -315 7158 6916 6 1494 364 229 238 0 chr4 119256725 119256847 -36373273 + RSINE1 SINE B4 3 153 -12 6 1494 234 0 0 0 chr4 119257124 119257150 -36372970 + (CAGTA)n Simple_repeat Simple_repeat 5 30 0 6 1494 430 237 90 35 chr4 119257265 119257409 -36372711 + B4 SINE B4 72 223 -69 6 1494 761 90 131 0 chr4 119257289 119257411 -36372709 + B1_Mus1 SINE Alu 11 148 0 6 1494 911 240 34 39 chr4 119257591 119257799 -36372321 + B3 SINE B2 1 207 -9 6 1494 665 254 51 11 chr4 119258035 119258210 -36371910 - B3A SINE B2 -16 182 1 6 1494 496 223 27 0 chr4 119258592 119258704 -36371416 - PB1D9 SINE Alu -5 115 1 6 1494 191 294 42 32 chr4 119259525 119259620 -36370500 + L2a LINE L2 3305 3400 -26 6 1494 588 259 0 109 chr4 119259874 119260039 -36370081 - B1_Mur1 SINE Alu -1 148 2 6 1494 1344 103 16 0 chr4 119260071 119260256 -36369864 - B2_Mm2 SINE B2 -6 189 2 6 1494 467 227 163 8 chr4 119260356 119260485 -36369635 - B1F2 SINE Alu 0 149 1 6 1494 613 229 94 78 chr4 119260720 119260900 -36369220 + B3A SINE B2 1 183 -15 6 1494 1023 194 48 14 chr4 119261192 119261401 -36368719 - B3 SINE B2 0 216 1 6 1494 34 42 0 0 chr4 119261940 119261988 -36368132 + AT_rich Low_complexity Low_complexity 1 48 0 6 1494 264 269 263 21 chr4 119262309 119262404 -36367716 + PB1D7 SINE Alu 1 118 -2 6 1494 428 249 178 12 chr4 119262409 119262572 -36367548 + B3A SINE B2 3 192 -6 6 1494 359 247 45 45 chr4 119263201 119263290 -36366830 - PB1D7 SINE Alu -6 114 26 6 1494 1687 24 0 10 chr4 119263858 119264066 -36366054 + L1Md_F3 LINE L1 6377 6582 -2 6 1494 225 306 0 35 chr4 119264330 119264445 -36365675 - L1M4 LINE L1 -716 5458 5348 6 1494 432 0 0 0 chr4 119264861 119264909 -36365211 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1494 345 308 103 0 chr4 119264920 119265027 -36365093 + B3A SINE B2 76 193 -5 6 1494 414 176 401 80 chr4 119265196 119265383 -36364737 - ORR1C2 LTR MaLR -11 373 55 6 1494 34 65 0 0 chr4 119265646 119265708 -36364412 + AT_rich Low_complexity Low_complexity 1 62 0 6 1494 1037 68 0 0 chr4 119265823 119265956 -36364164 + L1Md_F2 LINE L1 6112 6244 -338 6 1494 431 92 0 0 chr4 119265956 119266021 -36364099 + L1Md_F2 LINE L1 6508 6572 -10 6 1494 680 69 99 0 chr4 119266356 119266457 -36363663 + B2_Mm2 SINE B2 6 116 -79 6 1494 258 269 0 13 chr4 119266736 119266815 -36363305 + L1M5 LINE L1 5220 5297 -849 6 1494 564 116 0 0 chr4 119267020 119267106 -36363014 + (CGTG)n Simple_repeat Simple_repeat 2 87 0 6 1494 757 156 22 22 chr4 119267439 119267577 -36362543 - B1_Mur4 SINE Alu 0 150 13 6 1494 700 216 107 10 chr4 119267602 119267798 -36362322 - B3 SINE B2 0 216 2 6 1494 180 0 0 0 chr4 119267801 119267821 -36362299 + (TTTTTA)n Simple_repeat Simple_repeat 5 24 0 6 1494 24709 60 2 1 chr4 119267916 119271973 -36358147 - L1Md_F2 LINE L1 0 6582 2519 6 1494 1627 170 166 75 chr4 119272138 119272565 -36357555 - RMER4A LTR ERVK 0 466 1 6 1494 407 284 98 45 chr4 119273183 119273303 -36356817 + ID_B1 SINE B4 2 128 -96 6 1494 492 238 89 37 chr4 119273303 119273438 -36356682 + RSINE1 SINE B4 2 143 -22 6 1494 438 20 0 0 chr4 119273439 119273490 -36356630 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1494 393 183 0 0 chr4 119273645 119273716 -36356404 - MTD LTR MaLR -6 413 343 7 1494 695 282 63 90 chr4 119273838 119274138 -36355982 + B4A SINE B4 1 292 0 7 1494 245 353 35 12 chr4 119274317 119274403 -36355717 + B1F SINE Alu 6 93 -56 7 1494 1912 145 109 9 chr4 119274591 119274938 -36355182 - ORR1B1 LTR MaLR -8 386 5 7 1495 226 311 64 36 chr4 119275792 119275932 -36354188 + L2c LINE L2 3240 3383 -4 7 1495 239 208 0 19 chr4 119276014 119276068 -36354052 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1495 594 0 0 0 chr4 119276069 119276135 -36353985 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 7 1495 3842 169 97 36 chr4 119276196 119277004 -36353116 - RMER13A LTR ERVK -3 857 1 7 1495 246 22 20 61 chr4 119277051 119277100 -36353020 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1495 814 135 60 0 chr4 119277311 119277444 -36352676 + B1_Mus1 SINE Alu 8 148 0 7 1495 6401 172 38 12 chr4 119277596 119278960 -36351160 - Lx5 LINE L1 -223 6827 5458 7 1495 382 266 115 67 chr4 119279183 119279502 -36350618 - L1MA4 LINE L1 -361 5939 5602 7 1495 1232 191 0 18 chr4 119279502 119279721 -36350399 - B3 SINE B2 -1 215 1 7 1495 382 266 115 67 chr4 119279721 119279943 -36350177 - L1MA4 LINE L1 -699 5601 5373 7 1495 850 164 20 7 chr4 119279943 119280090 -36350030 - B1_Mur1 SINE Alu 0 149 1 7 1495 382 266 115 67 chr4 119280090 119280147 -36349973 - L1MA4 LINE L1 -928 5372 5313 7 1495 1297 264 73 43 chr4 119280143 119280429 -36349691 - L1MA4 LINE L1 -988 5155 4840 7 1495 1242 229 122 34 chr4 119280429 119280814 -36349306 - MTD LTR MaLR 0 419 1 7 1495 1297 264 73 43 chr4 119280814 119281128 -36348992 - L1MA4 LINE L1 -1304 4839 4537 7 1495 355 282 118 14 chr4 119281171 119281315 -36348805 - L1MA4 LINE L1 -1751 4392 4234 7 1495 445 276 263 11 chr4 119281287 119281565 -36348555 - L1MDa LINE L1 -5082 1551 1204 7 1495 343 355 148 33 chr4 119281960 119282292 -36347828 - MLT1J LTR MaLR -44 468 99 7 1495 372 298 7 41 chr4 119282836 119282983 -36347137 + ID_B1 SINE B4 76 217 -7 7 1495 533 259 16 57 chr4 119282993 119283116 -36347004 + RSINE1 SINE B4 20 137 -28 7 1495 22 56 0 0 chr4 119283134 119283170 -36346950 + AT_rich Low_complexity Low_complexity 1 36 0 7 1495 619 299 127 0 chr4 119283497 119283592 -36346528 - MTE2b LTR MaLR -4 375 274 7 1495 826 94 26 0 chr4 119283592 119283709 -36346411 + PB1D9 SINE Alu 1 120 0 7 1495 619 234 81 53 chr4 119283709 119283898 -36346222 - MTE2b LTR MaLR -106 273 1 7 1495 306 279 69 62 chr4 119285421 119285566 -36344554 + L1MEg LINE L1 2012 2157 -4085 7 1495 555 294 201 43 chr4 119285698 119286054 -36344066 + L1MEg LINE L1 2448 2859 -3287 7 1495 243 0 0 0 chr4 119286054 119286081 -36344039 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 7 1495 555 294 201 43 chr4 119286081 119286217 -36343903 + L1MEg LINE L1 2860 3017 -3129 7 1495 511 256 170 4 chr4 119286750 119287020 -36343100 - ORR1E LTR MaLR -4 355 4 7 1495 619 325 51 25 chr4 119287024 119287261 -36342859 + B4 SINE B4 38 280 -12 7 1495 333 289 197 22 chr4 119287619 119287888 -36342232 + Charlie1a DNA MER1_type 1 316 -1139 7 1495 922 293 127 29 chr4 119288027 119288477 -36341643 + Charlie1a DNA MER1_type 538 1031 -424 7 1495 431 321 0 18 chr4 119289354 119289465 -36340655 + RSINE1 SINE B4 57 165 0 7 1495 3721 46 0 2 chr4 119289481 119289935 -36340185 + L1Md_F2 LINE L1 6129 6581 -1 7 1495 391 275 0 0 chr4 119290842 119290922 -36339198 + ID4_ SINE ID 2 81 -2 7 1495 245 325 69 38 chr4 119291015 119291146 -36338974 - B4A SINE B4 -117 175 41 7 1495 231 36 0 0 chr4 119291740 119291768 -36338352 + (C)n Simple_repeat Simple_repeat 1 28 0 7 1495 180 0 0 0 chr4 119293359 119293379 -36336741 + (G)n Simple_repeat Simple_repeat 1 20 0 7 1495 273 320 28 42 chr4 119294038 119294171 -36335949 - MIR SINE MIR -127 149 23 7 1495 342 284 42 33 chr4 119294398 119294518 -36335602 + B1F SINE Alu 2 122 -27 7 1495 1309 111 21 10 chr4 119294618 119294810 -36335310 - B2_Mm2 SINE B2 0 195 2 7 1495 275 238 11 81 chr4 119294957 119295044 -36335076 - B4 SINE B4 0 292 212 7 1495 416 237 111 35 chr4 119295245 119295389 -36334731 - B4A SINE B4 0 292 138 7 1495 345 330 10 0 chr4 119295442 119295539 -36334581 - B4A SINE B4 -150 142 45 7 1495 584 259 75 19 chr4 119295513 119295674 -36334446 - B4 SINE B4 -28 264 95 7 1495 22 35 0 0 chr4 119296274 119296303 -36333817 + AT_rich Low_complexity Low_complexity 1 29 0 7 1495 234 220 189 33 chr4 119296908 119297030 -36333090 + MIRc SINE MIR 4 144 -124 7 1495 819 58 207 0 chr4 119297043 119297164 -36332956 + B1_Mm SINE Alu 1 146 -1 7 1495 186 71 0 0 chr4 119297165 119297193 -36332927 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1495 303 253 121 0 chr4 119298306 119298389 -36331731 - B3 SINE B2 -56 160 68 7 1495 187 293 221 47 chr4 119298523 119298579 -36331541 + MIRb SINE MIR 25 102 -166 7 1495 325 198 60 94 chr4 119298579 119298696 -36331424 - PB1D10 SINE Alu -1 116 4 7 1495 187 293 221 47 chr4 119298696 119298829 -36331291 + MIRb SINE MIR 103 247 -21 7 1495 441 0 0 0 chr4 119300500 119300549 -36329571 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1495 288 0 0 0 chr4 119302339 119302371 -36327749 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1495 403 259 50 25 chr4 119302744 119302863 -36327257 + RSINE1 SINE B4 4 125 -40 7 1495 366 358 20 26 chr4 119303594 119303746 -36326374 + B3A SINE B2 1 151 -47 7 1495 301 319 108 5 chr4 119304207 119304393 -36325727 - MIRb SINE MIR -17 251 47 7 1495 273 75 0 0 chr4 119304661 119304701 -36325419 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1495 271 22 87 0 chr4 119304701 119304747 -36325373 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 7 1495 255 276 158 36 chr4 119304903 119305042 -36325078 - B4 SINE B4 -77 215 60 7 1495 182 288 99 12 chr4 119305385 119305466 -36324654 + MIRb SINE MIR 99 186 -82 7 1495 357 24 0 0 chr4 119306729 119306771 -36323349 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1495 201 273 0 0 chr4 119309632 119309676 -36320444 - MIRb SINE MIR -16 252 209 7 1495 21 0 0 0 chr4 119310510 119310531 -36319589 + GC_rich Low_complexity Low_complexity 1 21 0 7 1495 216 0 0 0 chr4 119312315 119312339 -36317781 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1495 862 66 197 0 chr4 119312339 119312461 -36317659 - B1_Mm SINE Alu 0 147 2 7 1495 285 275 103 60 chr4 119312848 119312964 -36317156 + MIRm SINE MIR 25 145 -131 7 1495 255 226 104 31 chr4 119313453 119313549 -36316571 + MIRb SINE MIR 93 195 -73 7 1495 287 291 56 34 chr4 119313668 119313757 -36316363 + ID_B1 SINE B4 83 173 -51 7 1495 212 320 28 83 chr4 119313672 119313781 -36316339 + PB1D10 SINE Alu 14 116 -1 7 1495 984 206 33 9 chr4 119313867 119314078 -36316042 - B3 SINE B2 0 216 1 7 1495 231 244 77 23 chr4 119314238 119314368 -36315752 + L1M3 LINE L1 3034 3170 -2973 7 1495 519 188 19 38 chr4 119314374 119314479 -36315641 + B3 SINE B2 113 215 -1 7 1495 22 56 0 0 chr4 119314487 119314523 -36315597 + AT_rich Low_complexity Low_complexity 1 36 0 7 1495 1116 252 131 29 chr4 119314641 119315152 -36314968 + L1M3 LINE L1 4098 4660 -1480 7 1495 690 269 113 16 chr4 119315152 119315337 -36314783 - ID_B1 SINE B4 -20 204 2 7 1495 1348 250 52 23 chr4 119315388 119315506 -36314614 + ORR1D2 LTR MaLR 11 123 -247 7 1495 3311 145 182 3 chr4 119315506 119316093 -36314027 + RLTR17 LTR ERVK 1 692 0 7 1495 1348 250 52 23 chr4 119316093 119316322 -36313798 + ORR1D2 LTR MaLR 124 368 -2 7 1495 3183 3 5 50 chr4 119316367 119316751 -36313369 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1495 56354 22 13 3 chr4 119316751 119319054 -36311066 - IAPEz-int LTR ERVK 0 6481 4186 7 1495 3311 24 39 0 chr4 119319054 119319435 -36310685 + MTA_Mm LTR MaLR 1 396 0 7 1495 9257 32 6 2 chr4 119319435 119320528 -36309592 + MTA_Mm-int LTR MaLR 1 1098 0 7 1495 3311 24 39 0 chr4 119320528 119320909 -36309211 + MTA_Mm LTR MaLR 1 396 0 7 1495 56354 25 13 3 chr4 119320909 119325011 -36305109 - IAPEz-int LTR ERVK -2296 4185 67 7 1495 1049 86 159 0 chr4 119324982 119325145 -36304975 - IAPEz-int LTR ERVK -6285 196 8 7 1495 3183 3 5 50 chr4 119325145 119325529 -36304591 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1495 2596 273 34 45 chr4 119325648 119326538 -36303582 + Lx8 LINE L1 6593 7472 -1 7 1495 843 288 129 9 chr4 119326542 119327157 -36302963 + L1M3 LINE L1 4779 5467 -775 7 1495 1188 181 9 0 chr4 119327186 119327396 -36302724 + B3 SINE B2 3 214 -2 7 1495 885 81 88 0 chr4 119327442 119327578 -36302542 + B1_Mus1 SINE Alu 1 148 0 7 1495 428 277 95 33 chr4 119327584 119327827 -36302293 + L1MC4 LINE L1 951 1208 -5007 7 1495 790 245 75 0 chr4 119327837 119328037 -36302083 + ID_B1 SINE B4 2 216 -8 7 1495 183 290 32 0 chr4 119329784 119329846 -36300274 + L2b LINE L2 3090 3153 -222 7 1495 603 74 0 0 chr4 119330745 119330826 -36299294 + (TCC)n Simple_repeat Simple_repeat 2 82 0 7 1495 305 156 10 72 chr4 119330830 119330927 -36299193 + RMER17C LTR ERVK 185 275 -135 7 1495 193 261 120 5 chr4 119331798 119331884 -36298236 - MIR SINE MIR -125 143 46 7 1495 799 124 11 0 chr4 119332950 119333127 -36296993 + (CAGG)n Simple_repeat Simple_repeat 2 180 0 7 1495 212 314 71 76 chr4 119334068 119334278 -36295842 + L2a LINE L2 2097 2305 -1114 7 1495 282 353 63 67 chr4 119334298 119334553 -36295567 + L2a LINE L2 2476 2729 -690 7 1495 469 252 0 70 chr4 119334652 119334761 -36295359 - MLT2C2 LTR ERVL -54 505 405 7 1495 904 301 87 30 chr4 119334761 119335059 -36295061 + MER54A LTR ERVL 1 315 -586 7 1495 512 206 40 39 chr4 119335043 119335184 -36294936 - PB1D10 SINE Alu -12 138 5 7 1495 183 205 0 0 chr4 119335234 119335273 -36294847 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1495 782 287 4 44 chr4 119335490 119335716 -36294404 - MLT2C2 LTR ERVL -244 220 4 7 1495 227 326 92 50 chr4 119335719 119336000 -36294120 + L2a LINE L2 2727 3019 -400 7 1495 711 270 133 26 chr4 119336064 119336471 -36293649 - L1M2 LINE L1 -174 5673 5274 7 1495 642 140 40 0 chr4 119336517 119336617 -36293503 - B1_Mur1 SINE Alu -10 139 36 7 1495 1689 313 80 26 chr4 119336866 119337871 -36292249 - L1M2 LINE L1 -1110 5033 3975 7 1495 190 260 20 20 chr4 119337979 119338030 -36292090 + L2a LINE L2 3125 3175 -251 7 1495 373 206 9 9 chr4 119338061 119338169 -36291951 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 7 1495 238 257 18 0 chr4 119338210 119338272 -36291848 + L2a LINE L2 3296 3412 -14 7 1495 337 306 112 36 chr4 119338582 119338833 -36291287 - L2 LINE L2 -741 2678 2409 7 1495 220 350 114 19 chr4 119338893 119339155 -36290965 - L2 LINE L2 -1215 2204 1918 7 1495 252 298 82 12 chr4 119339326 119339411 -36290709 + L4 LINE RTE 1792 1882 -147 7 1495 905 123 20 13 chr4 119339430 119339881 -36290239 + (CA)n Simple_repeat Simple_repeat 1 453 0 7 1495 835 134 6 22 chr4 119339896 119340079 -36290041 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1495 326 197 43 7 chr4 119340599 119340737 -36289383 + (TG)n Simple_repeat Simple_repeat 1 143 0 7 1495 815 53 46 0 chr4 119341009 119341160 -36288960 + (TG)n Simple_repeat Simple_repeat 2 159 0 7 1495 210 234 273 0 chr4 119341463 119341540 -36288580 + MIRm SINE MIR 40 137 -131 7 1495 212 264 97 0 chr4 119341705 119341777 -36288343 - MIR SINE MIR -92 116 38 7 1495 292 230 11 84 chr4 119343150 119343245 -36286875 - MTEb LTR MaLR -2 377 290 7 1495 771 163 265 0 chr4 119344303 119344469 -36285651 - B3 SINE B2 -5 211 2 7 1495 295 225 124 18 chr4 119344582 119344695 -36285425 + L1ME2 LINE L1 5761 5885 -279 8 1495 588 250 28 0 chr4 119345046 119345190 -36284930 + RSINE1 SINE B4 16 163 -2 8 1495 312 196 0 0 chr4 119345695 119345746 -36284374 - HAL1-3A_ME LINE L1 -833 2025 1975 8 1495 750 196 0 4 chr4 119345780 119346048 -36284072 + (TG)n Simple_repeat Simple_repeat 1 266 0 8 1495 277 240 66 13 chr4 119346049 119346125 -36283995 - B3A SINE B2 -118 80 1 8 1495 2419 145 52 5 chr4 119346874 119347276 -36282844 + MTC LTR MaLR 1 421 0 8 1495 699 12 0 0 chr4 119347882 119347962 -36282158 + (GA)n Simple_repeat Simple_repeat 1 80 0 8 1495 301 260 102 44 chr4 119347994 119348131 -36281989 + HAL1-3A_ME LINE L1 2211 2355 -503 8 1495 846 254 68 29 chr4 119348329 119348609 -36281511 - B4A SINE B4 0 292 2 8 1495 242 241 43 77 chr4 119348650 119348775 -36281345 + MIR SINE MIR 70 196 -72 8 1495 301 227 18 0 chr4 119349765 119349875 -36280245 + (TG)n Simple_repeat Simple_repeat 1 112 0 8 1495 606 254 134 57 chr4 119349914 119350123 -36279997 - B4A SINE B4 -2 290 66 8 1495 461 286 84 110 chr4 119350370 119350669 -36279451 + B4 SINE B4 1 291 -1 8 1495 3511 25 2 0 chr4 119350726 119351121 -36278999 - MTA_Mm LTR MaLR 0 396 1 8 1495 8994 41 7 2 chr4 119351121 119352213 -36277907 - MTA_Mm-int LTR MaLR 0 1098 1 8 1495 3537 23 2 0 chr4 119352213 119352608 -36277512 - MTA_Mm LTR MaLR 0 396 1 8 1495 710 294 109 38 chr4 119353646 119353911 -36276209 + B4A SINE B4 3 286 -6 8 1495 387 0 0 0 chr4 119353973 119354016 -36276104 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1495 771 146 87 58 chr4 119354487 119354625 -36275495 + B1_Mur1 SINE Alu 3 144 -5 8 1495 271 250 29 14 chr4 119354762 119354831 -36275289 + PB1D10 SINE Alu 33 102 -15 8 1495 225 0 0 0 chr4 119355576 119355601 -36274519 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1495 462 268 115 40 chr4 119355641 119355789 -36274331 - B4 SINE B4 0 292 134 8 1495 989 113 63 7 chr4 119355817 119355959 -36274161 - B1_Mur4 SINE Alu 0 150 1 8 1495 714 223 0 48 chr4 119356925 119357071 -36273049 + RSINE1 SINE B4 14 152 -13 8 1495 272 260 20 147 chr4 119357071 119357123 -36272997 + B3A SINE B2 13 192 -6 8 1495 775 280 35 139 chr4 119357182 119357526 -36272594 - MTE2b LTR MaLR -54 325 18 8 1495 883 242 39 44 chr4 119357538 119357767 -36272353 - MTE-int LTR MaLR -1099 481 254 8 1495 225 231 39 0 chr4 119357783 119357835 -36272285 + GA-rich Low_complexity Low_complexity 3 56 0 8 1495 860 202 175 16 chr4 119358935 119359248 -36270872 - RMER21B LTR ERV1 -258 689 280 8 1495 2801 50 7 143 chr4 119359280 119359728 -36270392 - RLTR10 LTR ERVK -3 387 1 8 1495 16374 21 5 5 chr4 119359730 119361673 -36268447 - RLTR10-int LTR ERVK -3 1984 41 8 1495 2832 47 7 143 chr4 119361688 119362136 -36267984 - RLTR10 LTR ERVK -3 387 1 8 1495 304 244 0 0 chr4 119362671 119362749 -36267371 + G-rich Low_complexity Low_complexity 1 78 0 8 1495 320 0 25 0 chr4 119362754 119362794 -36267326 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1495 208 333 0 11 chr4 119363354 119363442 -36266678 + G-rich Low_complexity Low_complexity 3 89 0 8 1495 1080 124 215 0 chr4 119363812 119363998 -36266122 - URR1A DNA MER1_type 0 226 1 8 1495 2134 107 112 61 chr4 119364020 119364429 -36265691 + RLTR23 LTR ERV1 1 430 0 8 1495 257 341 75 40 chr4 119364960 119365134 -36264986 - LTR85c LTR Gypsy? -641 182 3 8 1495 184 30 61 0 chr4 119365242 119365275 -36264845 + (CCCA)n Simple_repeat Simple_repeat 1 35 0 8 1495 235 272 12 47 chr4 119365483 119365568 -36264552 + L1MEg LINE L1 521 602 -5482 8 1495 267 208 53 24 chr4 119365587 119365697 -36264423 + MLT1A1 LTR MaLR 20 132 -276 8 1495 279 312 41 10 chr4 119365816 119365913 -36264207 + ORR1E LTR MaLR 255 354 -5 8 1495 267 273 123 35 chr4 119366036 119366150 -36263970 - L2b LINE L2 -38 3337 3214 8 1495 306 292 148 44 chr4 119366157 119366386 -36263734 + MLT1H LTR MaLR 7 259 -290 8 1495 996 192 0 0 chr4 119366940 119367101 -36263019 - RSINE1 SINE B4 -4 161 1 8 1495 3562 25 0 0 chr4 119367815 119368211 -36261909 + MTA_Mm LTR MaLR 1 396 0 8 1495 256 274 103 7 chr4 119368317 119368453 -36261667 - L1M5 LINE L1 -409 5831 5683 8 1495 1428 62 0 11 chr4 119368839 119369019 -36261101 - B2_Mm2 SINE B2 -17 178 1 8 1495 31 0 0 0 chr4 119369251 119369282 -36260838 + AT_rich Low_complexity Low_complexity 1 31 0 8 1495 429 30 14 29 chr4 119369329 119369398 -36260722 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 8 1495 1150 52 0 0 chr4 119369398 119369533 -36260587 - B1_Mm SINE Alu -12 135 1 8 1495 377 315 109 85 chr4 119369605 119369945 -36260175 - L1MEd LINE L1 -5038 1081 734 8 1495 360 162 69 81 chr4 119371353 119371440 -36258680 - PB1D10 SINE Alu 0 117 32 8 1495 348 214 29 48 chr4 119371533 119371636 -36258484 - MER65-int LTR ERV1 -61 4810 4710 8 1495 292 209 15 0 chr4 119371735 119371802 -36258318 + Lx8 LINE L1 7001 7068 -405 8 1495 508 219 0 0 chr4 119371844 119371940 -36258180 - PB1D10 SINE Alu 0 117 22 8 1495 2309 133 75 8 chr4 119372053 119372440 -36257680 + MTC LTR MaLR 1 413 -8 8 1495 685 224 45 0 chr4 119372451 119372630 -36257490 + L1MA6 LINE L1 6109 6295 -5 8 1495 883 256 21 0 chr4 119373148 119373339 -36256781 + B3A SINE B2 1 195 -3 8 1495 1069 82 41 0 chr4 119373446 119373593 -36256527 - B2_Mm2 SINE B2 -14 181 29 8 1495 1346 85 16 5 chr4 119373593 119373782 -36256338 - B2_Mm1t SINE B2 -1 192 2 8 1495 631 257 84 132 chr4 119373789 119373955 -36256165 + B3A SINE B2 38 195 0 8 1495 3196 124 111 13 chr4 119374852 119375385 -36254735 - RMER4B LTR ERVK 0 585 1 8 1495 231 358 74 16 chr4 119376044 119376234 -36253886 + LTR78 LTR ERV1 393 593 -711 8 1495 356 331 19 76 chr4 119376321 119376478 -36253642 + LTR78 LTR ERV1 797 944 -360 8 1495 307 319 113 43 chr4 119377717 119377858 -36252262 + MTEa LTR MaLR 12 162 -217 8 1495 1003 198 64 10 chr4 119378048 119378252 -36251868 - B3 SINE B2 0 216 2 8 1495 355 344 0 8 chr4 119378266 119378395 -36251725 - L1M5 LINE L1 -479 5694 5567 8 1495 216 192 38 13 chr4 119378413 119378492 -36251628 + CT-rich Low_complexity Low_complexity 2 82 0 8 1495 379 315 18 9 chr4 119378504 119378613 -36251507 - PB1D10 SINE Alu 0 117 8 8 1495 366 296 94 27 chr4 119378766 119378915 -36251205 - L1MEg LINE L1 -5414 670 512 8 1495 782 219 114 5 chr4 119379190 119379392 -36250728 - MTD LTR MaLR -54 365 142 8 1495 772 170 127 6 chr4 119379363 119379529 -36250591 - B3 SINE B2 -21 195 10 8 1495 207 0 0 0 chr4 119380355 119380378 -36249742 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1495 227 259 140 73 chr4 119380769 119380919 -36249201 + L1MCa LINE L1 3 162 -6346 8 1495 389 319 213 26 chr4 119380919 119381266 -36248854 + L1MCa LINE L1 271 682 -5826 8 1495 338 171 0 14 chr4 119381434 119381505 -36248615 + GA-rich Low_complexity Low_complexity 1 70 0 8 1495 301 309 94 20 chr4 119381548 119381802 -36248318 + L1MCa LINE L1 825 1097 -5411 8 1495 268 88 35 0 chr4 119381818 119381875 -36248245 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 8 1495 198 0 0 0 chr4 119382215 119382237 -36247883 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 8 1495 271 136 0 33 chr4 119382373 119382434 -36247686 + GA-rich Low_complexity Low_complexity 2 60 0 8 1495 640 236 64 56 chr4 119382448 119382681 -36247439 + L1MCa LINE L1 1827 2061 -4447 8 1495 450 143 0 14 chr4 119382687 119382758 -36247362 - B4A SINE B4 -221 71 2 8 1495 470 297 60 84 chr4 119383160 119383458 -36246662 + B4A SINE B4 1 291 -1 8 1495 360 0 0 0 chr4 119383741 119383781 -36246339 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1495 216 0 0 0 chr4 119383781 119383804 -36246316 + (TC)n Simple_repeat Simple_repeat 2 25 0 8 1495 386 234 34 59 chr4 119383952 119384070 -36246050 + URR1B DNA MER1_type 110 224 -1 8 1495 610 141 223 0 chr4 119384262 119384383 -36245737 - B1_Mur4 SINE Alu 0 150 3 8 1495 836 108 7 52 chr4 119384399 119384418 -36245702 - B1_Mus2 SINE Alu 0 147 135 8 1495 186 71 0 0 chr4 119384418 119384446 -36245674 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1495 836 108 7 52 chr4 119384446 119384562 -36245558 - B1_Mus2 SINE Alu -13 134 18 8 1495 684 285 20 20 chr4 119385336 119385533 -36244587 - B3A SINE B2 0 198 2 8 1495 303 277 105 23 chr4 119385588 119385721 -36244399 + MER112 DNA MER1_type 7 150 -111 8 1495 27 62 0 0 chr4 119385805 119385853 -36244267 + AT_rich Low_complexity Low_complexity 1 48 0 8 1495 528 334 71 62 chr4 119385893 119386231 -36243889 - L1MEe LINE L1 -3510 2872 2532 8 1495 1229 50 0 6 chr4 119386236 119386398 -36243722 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 8 1495 444 19 0 0 chr4 119386403 119386456 -36243664 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1495 291 28 0 0 chr4 119386456 119386491 -36243629 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1495 296 246 0 84 chr4 119386491 119386562 -36243558 - RSINE1 SINE B4 -18 147 83 8 1495 379 238 108 68 chr4 119386801 119386950 -36243170 - L1MEe LINE L1 -3878 2524 2347 8 1495 548 29 14 0 chr4 119386950 119387020 -36243100 + (TC)n Simple_repeat Simple_repeat 2 72 0 8 1495 379 276 159 50 chr4 119387020 119387199 -36242921 - L1MEe LINE L1 -4033 2369 2124 8 1495 183 129 0 0 chr4 119387422 119387453 -36242667 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1495 295 211 75 112 chr4 119387469 119387576 -36242544 - RSINE1 SINE B4 -60 105 3 8 1495 1036 121 12 0 chr4 119388139 119388312 -36241808 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 8 1495 493 273 26 65 chr4 119388356 119388509 -36241611 - B1F1 SINE Alu -2 147 1 8 1495 443 161 85 12 chr4 119388519 119388601 -36241519 + RSINE1 SINE B4 76 163 -2 8 1495 546 219 0 0 chr4 119388618 119388769 -36241351 + (CA)n Simple_repeat Simple_repeat 1 151 0 8 1495 233 368 0 0 chr4 119388954 119389071 -36241049 - L1MEe LINE L1 -4995 1483 1367 8 1495 537 270 69 57 chr4 119390255 119390502 -36239618 + MIRb SINE MIR 19 268 0 8 1495 2592 78 20 6 chr4 119391928 119392276 -36237844 - RLTR15 LTR ERVK -3 356 4 8 1495 260 274 12 141 chr4 119392790 119392875 -36237245 - MLT1K LTR MaLR -309 286 213 8 1495 311 74 0 36 chr4 119392944 119393000 -36237120 + (TCTCTG)n Simple_repeat Simple_repeat 2 55 0 9 1495 307 326 110 77 chr4 119393396 119393642 -36236478 - LTR33 LTR ERVL -144 376 123 9 1495 224 278 73 62 chr4 119394561 119394657 -36235463 + L2c LINE L2 3263 3359 -28 9 1495 434 251 186 23 chr4 119394685 119394905 -36235215 + B4 SINE B4 8 263 -29 9 1495 837 176 224 0 chr4 119394975 119395145 -36234975 + B3 SINE B2 1 208 -8 9 1495 522 0 0 0 chr4 119395161 119395219 -36234901 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 9 1495 1228 69 0 0 chr4 119395219 119395379 -36234741 - B2_Mm2 SINE B2 -34 161 2 9 1495 228 70 233 0 chr4 119395442 119395485 -36234635 - ORR1C1 LTR MaLR -325 53 1 9 1495 546 178 0 47 chr4 119395657 119395763 -36234357 - PB1D10 SINE Alu 0 117 17 9 1495 1827 150 114 9 chr4 119396196 119396538 -36233582 + ORR1C1 LTR MaLR 1 378 0 9 1495 480 230 0 0 chr4 119396834 119396969 -36233151 + (CA)n Simple_repeat Simple_repeat 1 135 0 9 1495 614 282 87 24 chr4 119397028 119397235 -36232885 + MIR SINE MIR 28 247 -15 9 1495 192 41 36 109 chr4 119397758 119397813 -36232307 + A-rich Low_complexity Low_complexity 4 54 0 9 1495 516 323 63 45 chr4 119398465 119398734 -36231386 - L1MB7 LINE L1 -14 6170 5897 9 1495 584 248 189 24 chr4 119398884 119399132 -36230988 + B4A SINE B4 1 289 -3 9 1495 965 224 23 23 chr4 119399549 119399764 -36230356 + B3 SINE B2 2 216 0 9 1495 280 335 75 35 chr4 119402111 119402284 -36227836 - MLT1K LTR MaLR -54 541 362 9 1495 466 283 98 16 chr4 119402454 119402637 -36227483 + L1MA5A LINE L1 5724 5921 -376 9 1495 180 0 0 0 chr4 119402791 119402811 -36227309 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 9 1495 246 32 0 0 chr4 119402813 119402844 -36227276 + (TATG)n Simple_repeat Simple_repeat 2 32 0 9 1495 386 85 0 17 chr4 119402859 119402919 -36227201 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 9 1495 1020 115 7 0 chr4 119403101 119403249 -36226871 + URR1A DNA MER1_type 78 226 0 9 1495 525 260 188 17 chr4 119403373 119403549 -36226571 + B3 SINE B2 5 210 -6 9 1495 660 263 80 35 chr4 119403793 119403953 -36226167 + B3 SINE B2 7 179 -37 9 1495 357 24 0 0 chr4 119403953 119403995 -36226125 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1495 198 0 0 0 chr4 119403995 119404016 -36226104 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1495 660 263 80 35 chr4 119404016 119404055 -36226065 + B3 SINE B2 180 215 -1 9 1495 432 0 0 0 chr4 119404418 119404466 -36225654 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1495 1191 250 24 10 chr4 119404467 119404762 -36225358 + RMER5 LTR ERV1 233 531 -3 9 1495 563 352 5 22 chr4 119404762 119404984 -36225136 - MTE-int LTR MaLR -519 1061 844 9 1495 636 196 54 74 chr4 119404987 119405136 -36224984 + ORR1D1 LTR MaLR 228 373 -1 9 1495 242 354 133 76 chr4 119405136 119405464 -36224656 - ORR1E LTR MaLR -10 349 3 9 1495 842 294 112 16 chr4 119405466 119405833 -36224287 - L1MB8 LINE L1 -141 6037 5636 9 1496 387 318 139 15 chr4 119408040 119408241 -36221879 - MIR SINE MIR -35 227 2 9 1496 24 32 0 0 chr4 119408689 119408720 -36221400 + AT_rich Low_complexity Low_complexity 1 31 0 9 1496 336 228 112 99 chr4 119408720 119408881 -36221239 - RSINE1 SINE B4 0 165 3 9 1496 378 0 0 0 chr4 119408913 119408955 -36221165 + (TAG)n Simple_repeat Simple_repeat 3 44 0 9 1496 1148 213 34 47 chr4 119409161 119409457 -36220663 + B4A SINE B4 1 292 0 9 1496 355 309 0 0 chr4 119409637 119409718 -36220402 + ID4_ SINE ID 2 82 -1 9 1496 377 198 12 0 chr4 119410865 119410951 -36219169 + CT-rich Low_complexity Low_complexity 2 88 0 9 1496 444 312 11 65 chr4 119411043 119411228 -36218892 + MER20 DNA MER1_type 41 215 -4 9 1496 390 227 27 0 chr4 119411873 119411948 -36218172 - ID4 SINE ID -2 81 5 9 1496 216 0 0 0 chr4 119412583 119412607 -36217513 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 9 1496 278 246 0 0 chr4 119413032 119413093 -36217027 - MIRb SINE MIR -95 173 113 9 1496 547 317 42 34 chr4 119413758 119413996 -36216124 + L1M7 LINE L1 240 479 -5739 9 1496 285 89 0 0 chr4 119414204 119414249 -36215871 + (TGG)n Simple_repeat Simple_repeat 1 45 0 9 1496 189 294 39 85 chr4 119414637 119414767 -36215353 - L4 LINE RTE -547 1482 1359 9 1496 971 263 57 50 chr4 119414927 119415351 -36214769 + L1M2 LINE L1 5314 5740 -551 9 1496 1222 106 77 11 chr4 119415445 119415627 -36214493 - B2_Mm2 SINE B2 0 195 2 9 1496 897 244 5 20 chr4 119416110 119416311 -36213809 + B3A SINE B2 1 198 0 9 1496 22 35 0 0 chr4 119416312 119416341 -36213779 + AT_rich Low_complexity Low_complexity 1 29 0 9 1496 739 318 148 39 chr4 119416728 119417318 -36212802 + L2a LINE L2 2191 2844 -575 9 1496 270 0 0 0 chr4 119417336 119417366 -36212754 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1496 214 307 176 63 chr4 119417521 119417726 -36212394 + L2a LINE L2 3106 3332 -55 9 1496 464 307 25 101 chr4 119417891 119418249 -36211871 + L1M5 LINE L1 3367 3697 -2449 9 1496 370 212 176 0 chr4 119418252 119418337 -36211783 + B3A SINE B2 1 100 -98 9 1496 396 0 0 0 chr4 119418337 119418381 -36211739 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1496 374 252 45 80 chr4 119418384 119418496 -36211624 - B3A SINE B2 -16 182 75 9 1496 423 0 0 0 chr4 119418501 119418548 -36211572 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1496 1164 260 149 18 chr4 119418567 119419139 -36210981 + L1M5 LINE L1 3684 4330 -1816 9 1496 441 246 2 88 chr4 119419153 119419273 -36210847 + PB1 SINE Alu 13 120 -7 9 1496 1101 228 19 0 chr4 119419298 119419509 -36210611 + B3 SINE B2 2 216 0 9 1496 301 253 37 49 chr4 119419579 119419741 -36210379 + L1M5 LINE L1 4372 4531 -1615 9 1496 350 311 43 12 chr4 119419745 119419908 -36210212 + L1M5 LINE L1 4635 4802 -1344 9 1496 307 267 132 33 chr4 119420344 119420526 -36209594 + L1M5 LINE L1 4906 5105 -1041 9 1496 206 74 55 18 chr4 119420531 119420586 -36209534 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1496 427 142 36 30 chr4 119420602 119420769 -36209351 + (CA)n Simple_repeat Simple_repeat 1 168 0 9 1496 569 243 209 49 chr4 119420781 119421162 -36208958 + L1M5 LINE L1 5101 5542 -631 9 1496 674 230 149 16 chr4 119421290 119421484 -36208636 + ORR1D2 LTR MaLR 151 370 0 9 1496 286 303 20 0 chr4 119421513 119421612 -36208508 - PB1D10 SINE Alu 0 117 17 9 1496 529 243 48 35 chr4 119421950 119422095 -36208025 - B1F1 SINE Alu -2 147 1 9 1496 231 268 113 0 chr4 119422191 119422262 -36207858 - RSINE1 SINE B4 -84 81 3 9 1496 630 49 0 0 chr4 119422302 119422384 -36207736 + (TC)n Simple_repeat Simple_repeat 1 82 0 9 1496 198 0 0 0 chr4 119422384 119422405 -36207715 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1496 285 300 12 0 chr4 119424795 119424875 -36205245 - ID4 SINE ID -1 82 2 9 1496 406 257 9 76 chr4 119424875 119424977 -36205143 - PB1D7 SINE Alu -50 98 5 9 1496 747 230 0 7 chr4 119425005 119425145 -36204975 - ID_B1 SINE B4 -2 222 84 9 1496 604 305 52 9 chr4 119425404 119425616 -36204504 + MLT1B LTR MaLR 5 225 -165 9 1496 387 0 0 0 chr4 119426277 119426320 -36203800 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1496 806 286 50 0 chr4 119426589 119426809 -36203311 + Lx6 LINE L1 6138 6368 -682 9 1496 1756 277 55 19 chr4 119426807 119427382 -36202738 + Lx6 LINE L1 6484 7458 -2 9 1496 908 156 15 0 chr4 119427408 119427543 -36202577 + B1_Mur4 SINE Alu 3 139 -11 9 1496 1449 60 0 0 chr4 119427615 119427832 -36202288 + L1_Mus1 LINE L1 6369 6567 0 9 1496 617 229 200 0 chr4 119427924 119428099 -36202021 + B3 SINE B2 2 211 -5 9 1496 417 342 41 49 chr4 119428454 119428697 -36201423 - MLT1L LTR MaLR 0 610 370 9 1496 252 143 0 0 chr4 119428757 119428799 -36201321 + (TATG)n Simple_repeat Simple_repeat 4 45 0 9 1496 184 245 36 36 chr4 119429007 119429062 -36201058 - L3b LINE CR1 -87 395 341 9 1496 214 298 35 0 chr4 119429217 119429274 -36200846 - B1F SINE Alu -90 59 1 9 1496 231 88 0 0 chr4 119429650 119429684 -36200436 + (CACAG)n Simple_repeat Simple_repeat 1 34 0 9 1496 397 261 220 33 chr4 119429725 119429907 -36200213 + B3 SINE B2 1 216 0 9 1496 1361 95 16 5 chr4 119429920 119430111 -36200009 + B2_Mm2 SINE B2 2 194 -1 9 1496 300 327 99 18 chr4 119430231 119430402 -36199718 - HAL1-3A_ME LINE L1 -389 2469 2285 9 1496 873 248 72 68 chr4 119431815 119432066 -36198054 - B4A SINE B4 0 292 41 9 1496 21 0 0 0 chr4 119432477 119432498 -36197622 + AT_rich Low_complexity Low_complexity 1 21 0 9 1496 417 326 38 43 chr4 119432653 119432839 -36197281 + MamRep38 DNA hAT 97 281 -14 9 1496 220 211 208 14 chr4 119432919 119432991 -36197129 + L2b LINE L2 3269 3354 -21 9 1496 1723 223 44 8 chr4 119432996 119433384 -36196736 + MTD LTR MaLR 18 419 0 9 1496 1629 271 78 44 chr4 119433466 119434056 -36196064 + Lx8 LINE L1 6862 7471 -2 9 1496 187 322 228 16 chr4 119434476 119434599 -36195521 + MIR SINE MIR 108 256 -6 9 1496 321 89 0 0 chr4 119435472 119435517 -36194603 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1496 638 296 68 31 chr4 119435520 119435712 -36194408 - B4 SINE B4 -13 279 81 9 1496 318 303 45 0 chr4 119436303 119436392 -36193728 + L1ME4a LINE L1 6028 6120 -4 9 1496 407 295 57 8 chr4 119436709 119436832 -36193288 + B4A SINE B4 7 135 -157 9 1496 276 100 0 0 chr4 119436839 119436879 -36193241 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1496 378 0 0 0 chr4 119436914 119436956 -36193164 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1496 829 311 72 0 chr4 119436960 119437169 -36192951 + B4A SINE B4 69 292 0 9 1496 183 100 0 0 chr4 119438023 119438053 -36192067 + (TTGGGG)n Simple_repeat Simple_repeat 1 30 0 9 1496 844 322 49 68 chr4 119438676 119439143 -36190977 + MLT1D LTR MaLR 48 505 0 9 1496 757 265 99 34 chr4 119439212 119439276 -36190844 - B4A SINE B4 -12 280 218 9 1496 1343 102 0 5 chr4 119439276 119439463 -36190657 - B2_Mm2 SINE B2 -8 187 2 9 1496 504 0 0 0 chr4 119439465 119439521 -36190599 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1496 757 265 99 34 chr4 119439521 119439715 -36190405 - B4A SINE B4 -75 217 4 9 1496 575 325 93 52 chr4 119439752 119440096 -36190024 + MLT1G3 LTR MaLR 231 588 -7 1 1496 614 324 113 9 chr4 119440659 119441005 -36189115 + L2 LINE L2 1419 1800 -1619 1 1496 303 28 0 0 chr4 119441139 119441175 -36188945 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 1496 270 298 77 12 chr4 119441209 119441379 -36188741 - L1MEg LINE L1 -3844 2302 2122 1 1496 378 209 53 124 chr4 119441406 119441575 -36188545 - L1MEg LINE L1 -4120 2046 1890 1 1496 396 348 76 60 chr4 119441681 119441884 -36188236 - L1MEg LINE L1 -4465 1701 1499 1 1496 1176 196 0 14 chr4 119441884 119442101 -36188019 + B3 SINE B2 1 214 -2 1 1496 396 348 76 60 chr4 119442101 119442267 -36187853 - L1MEg LINE L1 -4668 1498 1326 1 1496 194 91 0 64 chr4 119442277 119442324 -36187796 + T-rich Low_complexity Low_complexity 1 44 0 1 1496 503 309 125 81 chr4 119442391 119443001 -36187119 - L1MEg LINE L1 -4909 1227 588 1 1496 226 73 24 24 chr4 119443373 119443415 -36186705 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 1 1496 817 238 64 100 chr4 119443428 119443649 -36186471 - L1M2 LINE L1 -641 5650 5442 1 1496 988 191 43 19 chr4 119443649 119443857 -36186263 - B3 SINE B2 0 216 4 1 1496 824 238 64 100 chr4 119443857 119443995 -36186125 - L1M2 LINE L1 -850 5441 5304 1 1496 622 274 66 5 chr4 119444019 119444232 -36185888 + L1MA7 LINE L1 6017 6242 -49 1 1496 1721 262 80 24 chr4 119444269 119444717 -36185403 - L1M2 LINE L1 -879 5264 4798 1 1496 1898 170 41 16 chr4 119444717 119445082 -36185038 - ORR1D1 LTR MaLR 0 374 1 1 1496 1721 262 80 24 chr4 119445082 119445332 -36184788 - L1M2 LINE L1 -1346 4797 4527 1 1496 369 93 0 0 chr4 119445466 119445520 -36184600 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1496 383 280 173 68 chr4 119445524 119445773 -36184347 - B4A SINE B4 -16 276 2 1 1496 427 227 10 10 chr4 119445957 119446055 -36184065 + PB1D10 SINE Alu 19 116 -1 1 1496 1134 262 44 57 chr4 119446472 119446856 -36183264 + MTE2a LTR MaLR 1 379 0 1 1496 1339 148 32 0 chr4 119448061 119448278 -36181842 + URR1A DNA MER1_type 1 224 -2 1 1496 288 0 0 0 chr4 119448492 119448524 -36181596 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1496 224 333 33 0 chr4 119448950 119449040 -36181080 - L3 LINE CR1 -915 3574 3482 1 1496 640 198 111 11 chr4 119449614 119449766 -36180354 - B3A SINE B2 -35 163 2 1 1496 372 22 0 0 chr4 119450193 119450238 -36179882 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1496 627 281 75 26 chr4 119450279 119450506 -36179614 - B4A SINE B4 -14 278 41 1 1496 249 33 0 0 chr4 119450526 119450556 -36179564 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1496 552 100 0 0 chr4 119450581 119450661 -36179459 + (TCC)n Simple_repeat Simple_repeat 2 81 0 1 1496 470 224 36 11 chr4 119450661 119450783 -36179337 - PB1D10 SINE Alu -21 128 7 1 1496 225 0 0 0 chr4 119451004 119451029 -36179091 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1496 236 302 110 8 chr4 119451153 119451280 -36178840 - MER5A1 DNA MER1_type -1 165 26 1 1496 207 0 0 0 chr4 119452102 119452125 -36177995 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1496 792 244 210 12 chr4 119452680 119452999 -36177121 - MLT1C LTR MaLR -4 463 82 1 1496 471 216 8 90 chr4 119454511 119454633 -36175487 - PB1D10 SINE Alu 0 117 6 1 1496 264 324 8 67 chr4 119454963 119455082 -36175038 + MER20 DNA MER1_type 53 164 -55 1 1496 360 0 0 0 chr4 119455200 119455240 -36174880 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1496 234 0 0 0 chr4 119455240 119455265 -36174855 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1496 366 208 11 51 chr4 119455617 119455794 -36174326 + (TATG)n Simple_repeat Simple_repeat 1 170 0 1 1496 245 271 0 0 chr4 119455805 119455864 -36174256 + (TATG)n Simple_repeat Simple_repeat 1 59 0 1 1496 219 268 27 53 chr4 119455864 119455939 -36174181 - ID4 SINE ID -6 77 5 1 1496 883 180 0 0 chr4 119456522 119456661 -36173459 - B1_Mur2 SINE Alu -9 140 2 1 1496 313 349 9 9 chr4 119456994 119457101 -36173019 - MLT1F1 LTR MaLR -68 501 395 1 1496 1123 188 14 18 chr4 119458079 119458296 -36171824 + URR1B DNA MER1_type 6 221 -4 1 1496 239 260 175 62 chr4 119458319 119458479 -36171641 + RMER1C Other Other 1160 1337 -5 1 1496 740 96 0 9 chr4 119459262 119459378 -36170742 + (TCC)n Simple_repeat Simple_repeat 1 115 0 1 1496 28 0 0 0 chr4 119460032 119460060 -36170060 + AT_rich Low_complexity Low_complexity 1 28 0 1 1496 1739 136 121 49 chr4 119460233 119460436 -36169684 - ORR1D1 LTR MaLR 0 374 164 1 1496 201 94 0 0 chr4 119460436 119460468 -36169652 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 1 1496 1739 136 121 49 chr4 119460468 119460611 -36169509 - ORR1D1 LTR MaLR -211 163 3 1 1496 531 98 0 0 chr4 119460723 119460815 -36169305 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 1 1496 459 278 117 0 chr4 119460815 119460928 -36169192 - B3A SINE B2 -17 181 52 1 1496 195 69 0 0 chr4 119460928 119460957 -36169163 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 1 1496 459 278 117 0 chr4 119460957 119461005 -36169115 - B3A SINE B2 -147 51 2 1 1496 482 319 77 60 chr4 119461174 119461527 -36168593 - ORR1E LTR MaLR 0 359 1 1 1496 256 321 44 13 chr4 119462870 119463028 -36167092 + MIR SINE MIR 98 260 -2 1 1496 452 305 88 24 chr4 119463138 119463343 -36166777 - MIRb SINE MIR 0 268 51 1 1496 6471 67 26 1 chr4 119463978 119464833 -36165287 - Lx3_Mus LINE L1 -211 6798 5923 1 1496 6397 66 2 36 chr4 119464835 119464904 -36165216 + L1_Mur1 LINE L1 5040 5108 -778 1 1496 1229 48 7 0 chr4 119464904 119465051 -36165069 + B1_Mus1 SINE Alu 1 148 0 1 1496 6397 66 2 36 chr4 119465051 119465847 -36164273 + L1_Mur1 LINE L1 5109 5876 -10 1 1496 2186 272 76 42 chr4 119466341 119466523 -36163597 - Lx8 LINE L1 -1037 6436 6255 1 1496 2146 99 98 9 chr4 119466523 119466860 -36163260 - ORR1B2 LTR MaLR 0 367 1 1 1496 2186 272 76 42 chr4 119466860 119467444 -36162676 - Lx8 LINE L1 -1219 6254 5644 1 1496 306 225 45 0 chr4 119468030 119468119 -36162001 - L1MB4 LINE L1 0 6180 6088 1 1496 913 230 95 65 chr4 119468124 119468505 -36161615 - MTE2a LTR MaLR 0 419 18 1 1496 723 282 93 50 chr4 119468513 119468856 -36161264 - L1MB3 LINE L1 -92 6091 5734 1 1496 211 273 88 29 chr4 119468904 119468972 -36161148 + ID4_ SINE ID 10 81 -2 1 1496 395 19 0 19 chr4 119469868 119469921 -36160199 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1 1496 662 128 43 0 chr4 119469949 119470066 -36160054 - B2_Mm2 SINE B2 -70 125 4 1 1496 204 283 0 0 chr4 119471349 119471402 -36158718 - L2a LINE L2 -27 3399 3347 1 1496 1542 249 69 29 chr4 119472285 119472777 -36157343 - Lx8 LINE L1 -11 7462 6951 1 1496 300 225 50 0 chr4 119472766 119472846 -36157274 - L1M5 LINE L1 -2826 3320 3237 1 1496 2009 297 121 33 chr4 119473206 119474754 -36155366 + L1MEc LINE L1 2218 3922 -2397 1 1496 697 245 0 7 chr4 119474769 119474909 -36155211 + RSINE1 SINE B4 3 141 -24 1 1496 442 322 26 40 chr4 119475018 119475290 -36154830 + L1MEc LINE L1 3918 4185 -2134 1 1496 1189 36 0 0 chr4 119475291 119475428 -36154692 + B1_Mus2 SINE Alu 2 138 -9 1 1496 201 156 0 0 chr4 119475473 119475505 -36154615 + (CAAG)n Simple_repeat Simple_repeat 4 35 0 1 1496 23 43 0 21 chr4 119475738 119475750 -36154370 + AT_rich Low_complexity Low_complexity 1 12 0 1 1496 1161 133 81 5 chr4 119475750 119475947 -36154173 - B3 SINE B2 -4 212 1 1 1496 23 43 0 21 chr4 119475947 119475982 -36154138 + AT_rich Low_complexity Low_complexity 1 35 0 1 1496 554 298 129 56 chr4 119476078 119476625 -36153495 + L1MC4a LINE L1 6767 7389 -493 1 1496 260 322 35 7 chr4 119477148 119477327 -36152793 + L1MC4a LINE L1 7427 7720 -275 1 1496 284 310 26 34 chr4 119477446 119477563 -36152557 + L1MC4a LINE L1 7710 7825 -57 1 1496 955 87 7 20 chr4 119478843 119478995 -36151125 - URR1A DNA MER1_type 0 226 77 1 1496 388 318 105 21 chr4 119479035 119479273 -36150847 - MT2A LTR ERVL -16 517 260 1 1496 1471 160 106 33 chr4 119479281 119479610 -36150510 + ORR1B1 LTR MaLR 42 394 0 1 1496 240 272 93 37 chr4 119479610 119479711 -36150409 + B4 SINE B4 91 197 -95 1 1496 909 120 0 0 chr4 119479941 119480083 -36150037 + (TCC)n Simple_repeat Simple_repeat 1 142 0 1 1496 525 129 0 0 chr4 119480399 119480492 -36149628 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 1 1496 348 328 137 4 chr4 119480684 119480917 -36149203 - MLT1J LTR MaLR -240 272 9 1 1496 585 261 43 120 chr4 119481591 119481975 -36148145 - ORR1E LTR MaLR -2 377 1 1 1496 184 271 51 0 chr4 119482054 119482113 -36148007 + MIR SINE MIR 176 237 -25 1 1496 254 356 77 91 chr4 119482165 119482594 -36147526 - MLT1D LTR MaLR -21 484 62 1 1496 363 257 12 19 chr4 119483084 119483197 -36146923 + PB1D10 SINE Alu 3 124 -3 1 1496 204 125 0 0 chr4 119483304 119483336 -36146784 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1 1496 258 252 9 37 chr4 119483450 119483557 -36146563 - MER44A DNA MER2_type -133 206 103 1 1496 232 174 0 0 chr4 119483557 119483603 -36146517 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 1 1496 471 87 0 0 chr4 119484327 119484396 -36145724 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1496 804 74 0 0 chr4 119486323 119486431 -36143689 + (CAGGG)n Simple_repeat Simple_repeat 3 110 0 1 1496 21 0 0 0 chr4 119487670 119487691 -36142429 + GC_rich Low_complexity Low_complexity 1 21 0 1 1496 249 33 0 0 chr4 119489675 119489705 -36140415 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1496 9120 15 0 1 chr4 119490662 119492189 -36137931 - L1Md_T LINE L1 0 6582 5057 1 1496 657 54 0 0 chr4 119492304 119492393 -36137727 + L1_Mm LINE L1 5138 5232 -651 1 1496 615 243 158 59 chr4 119493466 119493719 -36136401 + B4 SINE B4 15 292 0 1 1496 272 321 0 0 chr4 119493719 119493800 -36136320 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1 1496 342 0 0 0 chr4 119495556 119495594 -36134526 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1496 941 81 7 14 chr4 119495964 119496102 -36134018 - L1_Mus1 LINE L1 0 6567 6431 1 1496 542 263 254 14 chr4 119496251 119496767 -36133353 - L1M5 LINE L1 -2213 3933 3294 1 1496 4763 58 3 2 chr4 119497125 119497711 -36132409 - L1_Mus3 LINE L1 -12 6626 6040 1 1496 603 228 16 0 chr4 119497785 119497908 -36132212 - B1_Mur1 SINE Alu -7 142 18 1 1496 558 326 39 15 chr4 119498043 119498373 -36131747 - L1M5 LINE L1 -3505 2641 2304 1 1496 4400 83 2 14 chr4 119499212 119500000 -36130120 + L1_Mus3 LINE L1 5252 6033 -605 1 1496 4369 63 20 2 chr4 119500000 119500591 -36129529 + L1_Mus3 LINE L1 6034 6635 -3 1 1496 185 185 0 36 chr4 119502002 119502058 -36128062 + GA-rich Low_complexity Low_complexity 4 57 0 2 1496 722 265 20 70 chr4 119502155 119502354 -36127766 - ID_B1 SINE B4 -35 189 1 3 1496 557 264 0 0 chr4 119502354 119502494 -36127626 - L1M5 LINE L1 -399 5780 5641 4 1496 1483 265 42 8 chr4 119502587 119502949 -36127171 - MTE2b LTR MaLR -2 368 1 5 1496 527 230 117 0 chr4 119503032 119503159 -36126961 + MIR SINE MIR 9 153 -115 6 1496 468 0 0 0 chr4 119503195 119503247 -36126873 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1496 227 247 112 92 chr4 119503442 119503540 -36126580 - PB1 SINE Alu -6 121 22 8 1496 470 254 82 7 chr4 119504058 119504193 -36125927 - B1F SINE Alu -1 148 4 9 1496 333 0 0 0 chr4 119504307 119504344 -36125776 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1496 674 308 16 13 chr4 119504344 119504620 -36125500 - Lx9 LINE L1 -232 7412 7035 1 1496 359 269 19 37 chr4 119504620 119504728 -36125392 - RSINE1 SINE B4 -41 124 19 1 1496 30 27 0 0 chr4 119504741 119504778 -36125342 + AT_rich Low_complexity Low_complexity 1 37 0 1 1496 1113 206 14 41 chr4 119504815 119505033 -36125087 - B3 SINE B2 0 216 5 1 1496 2600 161 165 6 chr4 119505137 119505676 -36124444 + RMER1B Other Other 442 1066 0 1 1496 401 169 28 0 chr4 119505690 119505761 -36124359 + ID4_ SINE ID 2 74 -9 1 1496 367 280 39 16 chr4 119505802 119505929 -36124191 + B1F1 SINE Alu 5 134 -15 1 1496 269 306 64 9 chr4 119506930 119507039 -36123081 + MIR SINE MIR 115 229 -33 6 1496 553 337 58 15 chr4 119507180 119507385 -36122735 - MER20 DNA MER1_type -5 214 1 1 1496 931 285 96 52 chr4 119507436 119507917 -36122203 + Lx9 LINE L1 7142 7643 -1 1 1496 22 0 0 0 chr4 119508566 119508588 -36121532 + AT_rich Low_complexity Low_complexity 1 22 0 2 1496 187 309 36 0 chr4 119509139 119509194 -36120926 - L2c LINE L2 -3 3384 3328 2 1496 411 286 78 30 chr4 119510387 119510553 -36119567 - MIR SINE MIR -83 179 6 2 1496 506 289 37 31 chr4 119512000 119512161 -36117959 + MER3 DNA MER1_type 31 192 -17 2 1496 1952 308 68 89 chr4 119512522 119513398 -36116722 - Arthur1B DNA Tip100 -27 1198 363 2 1496 396 252 6 155 chr4 119513398 119513572 -36116548 + B1F SINE Alu 2 149 0 2 1496 389 300 0 0 chr4 119513575 119513655 -36116465 + ID4 SINE ID 2 81 -2 2 1496 1952 308 68 89 chr4 119513655 119513944 -36116176 - Arthur1B DNA Tip100 -863 362 56 2 1496 427 194 0 72 chr4 119513979 119514173 -36115947 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 2 1496 427 188 0 71 chr4 119514251 119514434 -36115686 + (TCTG)n Simple_repeat Simple_repeat 1 170 0 2 1496 472 226 94 20 chr4 119515152 119515415 -36114705 - L1MA4 LINE L1 -1683 6013 5730 2 1496 467 243 7 3 chr4 119516575 119516680 -36113440 - PB1D10 SINE Alu -5 112 7 3 1496 333 0 0 0 chr4 119517500 119517537 -36112583 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1496 225 293 0 24 chr4 119517561 119517645 -36112475 + (TATG)n Simple_repeat Simple_repeat 3 84 0 3 1496 264 263 0 0 chr4 119517587 119517644 -36112476 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1496 608 306 23 17 chr4 119517647 119517823 -36112297 - B4A SINE B4 -2 290 114 3 1496 226 258 32 0 chr4 119518041 119518103 -36112017 + Tigger14a DNA MER2_type 252 315 -9 3 1496 1109 236 114 62 chr4 119518219 119518571 -36111549 - ORR1D2 LTR MaLR 0 370 1 3 1496 270 248 95 60 chr4 119518573 119518689 -36111431 + MIRb SINE MIR 118 237 -31 3 1496 420 153 0 0 chr4 119518968 119519053 -36111067 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1496 353 299 35 22 chr4 119519056 119519213 -36110907 - B4 SINE B4 0 292 78 3 1496 485 279 48 48 chr4 119519781 119519969 -36110151 + MIR SINE MIR 30 217 -45 4 1496 1216 275 43 26 chr4 119521580 119521680 -36108440 + L1MA7 LINE L1 5510 5610 -681 4 1496 3287 46 8 2 chr4 119521680 119522073 -36108047 + MTA_Mm LTR MaLR 2 396 0 4 1496 1216 275 43 26 chr4 119522073 119522394 -36107726 + L1MA7 LINE L1 5611 5938 -353 4 1496 1327 264 16 60 chr4 119522412 119522779 -36107341 + ORR1E LTR MaLR 4 354 -5 4 1496 227 218 10 0 chr4 119522780 119522881 -36107239 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 1496 373 279 117 38 chr4 119522902 119523166 -36106954 + L1MA7 LINE L1 6010 6294 -6 4 1496 1151 277 14 4 chr4 119523969 119524248 -36105872 + B4A SINE B4 1 282 -10 4 1496 255 273 15 0 chr4 119525066 119525132 -36104988 - L2b LINE L2 -75 3300 3234 4 1496 201 147 0 0 chr4 119526049 119526083 -36104037 + (TCC)n Simple_repeat Simple_repeat 3 36 0 4 1496 759 119 17 178 chr4 119526098 119526272 -36103848 - B1_Mur4 SINE Alu 0 150 5 4 1496 540 293 110 98 chr4 119527282 119527854 -36102266 + L1ME2 LINE L1 5579 6157 -7 4 1496 244 229 0 40 chr4 119528884 119528984 -36101136 + (TATG)n Simple_repeat Simple_repeat 3 98 0 5 1496 268 333 8 31 chr4 119529441 119529568 -36100552 + Cheshire DNA MER1_type 4 127 -2293 5 1496 711 220 89 11 chr4 119530291 119530470 -36099650 + B3 SINE B2 20 212 -4 5 1496 777 76 0 0 chr4 119530471 119530576 -36099544 + (TG)n Simple_repeat Simple_repeat 1 105 0 5 1496 207 0 0 0 chr4 119531204 119531227 -36098893 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 5 1496 771 186 47 0 chr4 119532595 119532724 -36097396 - B3 SINE B2 -80 136 2 5 1496 269 243 22 37 chr4 119533298 119533393 -36096727 - L1ME2 LINE L1 -11 6153 6064 5 1496 927 186 180 0 chr4 119534844 119535027 -36095093 - B3 SINE B2 0 216 1 5 1496 1662 31 0 15 chr4 119536332 119536528 -36093592 + B2_Mm1a SINE B2 1 193 0 5 1496 234 309 18 0 chr4 119536704 119536759 -36093361 + ID4_ SINE ID 17 72 -11 5 1496 447 300 23 81 chr4 119537303 119537477 -36092643 - RSINE1 SINE B4 0 165 2 6 1497 1031 186 53 10 chr4 119538301 119538507 -36091613 - B3 SINE B2 0 216 2 6 1497 590 87 0 0 chr4 119539349 119539441 -36090679 - Lx2 LINE L1 0 6997 6906 6 1497 1569 230 78 3 chr4 119539447 119539778 -36090342 - ORR1D2 LTR MaLR -12 358 3 6 1497 270 0 0 0 chr4 119540079 119540109 -36090011 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 6 1497 23 0 0 0 chr4 119541531 119541554 -36088566 + AT_rich Low_complexity Low_complexity 1 23 0 6 1497 209 279 32 98 chr4 119542365 119542488 -36087632 - MIRb SINE MIR -45 223 109 6 1497 207 189 0 0 chr4 119543632 119543669 -36086451 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1497 439 308 128 0 chr4 119543872 119544028 -36086092 + MER5A DNA MER1_type 6 181 -8 6 1497 186 281 78 0 chr4 119546596 119546660 -36083460 + L3 LINE CR1 3957 4025 -464 6 1497 357 302 0 0 chr4 119547235 119547414 -36082706 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1497 192 163 0 0 chr4 119547476 119547519 -36082601 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1497 505 319 131 27 chr4 119547569 119547898 -36082222 - L2a LINE L2 0 3426 3064 7 1497 558 0 0 0 chr4 119549115 119549177 -36080943 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1497 307 320 0 0 chr4 119550088 119550166 -36079954 - ID4_ SINE ID -3 80 3 7 1497 476 246 21 56 chr4 119550171 119550313 -36079807 - B1F SINE Alu -1 148 12 7 1497 385 346 6 55 chr4 119550175 119550340 -36079780 - ID_B1 SINE B4 -1 223 67 7 1497 391 311 9 9 chr4 119550677 119550784 -36079336 + PB1D10 SINE Alu 3 109 -8 7 1497 810 273 43 6 chr4 119550880 119551183 -36078937 - ORR1E LTR MaLR -11 348 1 7 1497 897 339 65 16 chr4 119551982 119552366 -36077754 - MLT1C LTR MaLR -12 455 53 7 1497 1497 288 58 14 chr4 119552600 119553103 -36077017 - Lx8 LINE L1 -461 7012 6488 7 1497 207 0 0 0 chr4 119553259 119553282 -36076838 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 8 1497 1626 186 55 95 chr4 119554653 119555075 -36075045 + MTD LTR MaLR 1 405 -14 8 1497 276 345 154 32 chr4 119555102 119555225 -36074895 + MIR3 SINE MIR 62 199 -9 8 1497 183 403 0 0 chr4 119556162 119556239 -36073881 - MIR SINE MIR -38 224 148 8 1497 984 307 34 55 chr4 119556333 119556432 -36073688 - Lx9 LINE L1 -44 7600 7497 8 1497 988 154 0 0 chr4 119556432 119556581 -36073539 + B1_Mur4 SINE Alu 2 150 0 8 1497 984 307 34 55 chr4 119556581 119556950 -36073170 - Lx9 LINE L1 -148 7496 7142 8 1497 2174 113 9 12 chr4 119556979 119557300 -36072820 - ORR1A2 LTR MaLR 0 327 8 8 1497 1079 244 11 35 chr4 119557361 119557645 -36072475 - Lx9 LINE L1 -594 7050 6774 8 1497 319 293 88 75 chr4 119559064 119559304 -36070816 - L1M5 LINE L1 -338 5786 5544 8 1497 191 276 144 31 chr4 119560357 119560454 -36069666 + MIR SINE MIR 66 173 -89 8 1497 255 337 32 0 chr4 119560485 119560580 -36069540 - MLT1A LTR MaLR 0 390 293 8 1497 1525 217 22 65 chr4 119560590 119560959 -36069161 + ORR1E LTR MaLR 1 353 -6 9 1497 296 383 19 48 chr4 119560970 119561176 -36068944 - MLT1A LTR MaLR -95 279 80 8 1497 239 379 68 56 chr4 119561743 119561905 -36068215 + MLT1G1 LTR MaLR 413 576 -3 9 1497 664 248 9 0 chr4 119561963 119562124 -36067996 + MLT1A1 LTR MaLR 197 408 0 9 1497 195 357 40 20 chr4 119562669 119562769 -36067351 - MIRm SINE MIR -3 273 172 9 1497 291 271 29 86 chr4 119562949 119563054 -36067066 - L1MB5 LINE L1 -210 5964 5866 9 1497 1138 178 69 0 chr4 119563096 119563298 -36066822 - B3 SINE B2 0 216 1 9 1497 1134 81 0 0 chr4 119563438 119563610 -36066510 + (TG)n Simple_repeat Simple_repeat 2 173 0 9 1497 277 333 16 37 chr4 119563614 119563801 -36066319 - L1MEb LINE L1 -5319 881 699 9 1497 500 281 0 0 chr4 119563919 119564033 -36066087 - B1F SINE Alu -28 121 8 9 1497 273 310 78 17 chr4 119563931 119564046 -36066074 - B4 SINE B4 -94 198 77 9 1497 294 312 81 19 chr4 119564084 119564244 -36065876 - L1MEb LINE L1 -5532 562 393 9 1497 497 196 78 10 chr4 119564501 119564604 -36065516 + RSINE1 SINE B4 3 112 -53 1 1497 1171 61 12 0 chr4 119564605 119564770 -36065350 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1497 505 348 94 37 chr4 119564985 119565388 -36064732 + L1MEg LINE L1 1163 1588 -4654 1 1497 756 250 151 11 chr4 119565900 119566180 -36063940 + MTEb LTR MaLR 73 376 -3 1 1497 473 312 7 21 chr4 119566617 119566758 -36063362 + ORR1E LTR MaLR 11 149 -210 1 1497 476 118 22 45 chr4 119566760 119566849 -36063271 - MTC LTR MaLR 0 421 335 1 1497 1090 216 38 9 chr4 119567012 119567222 -36062898 - B3 SINE B2 0 216 1 1 1497 263 291 84 12 chr4 119567235 119567402 -36062718 + L1MEg LINE L1 2860 3038 -3108 1 1497 207 375 23 38 chr4 119567746 119567879 -36062241 + MIRb SINE MIR 26 156 -112 1 1497 210 308 0 15 chr4 119567964 119568030 -36062090 - PB1D10 SINE Alu -2 115 51 1 1497 207 0 0 0 chr4 119568038 119568061 -36062059 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1497 314 337 134 28 chr4 119570358 119570762 -36059358 + L2a LINE L2 2918 3425 -1 1 1497 329 291 61 30 chr4 119571060 119571191 -36058929 + MIRc SINE MIR 18 152 -116 1 1497 7994 39 9 3 chr4 119572003 119573590 -36056530 - L1Md_F2 LINE L1 -1 6581 4987 1 1497 256 312 91 11 chr4 119573606 119573781 -36056339 + MER2 DNA MER2_type 7 195 -150 1 1497 473 230 0 15 chr4 119573784 119573921 -36056199 + (CATATA)n Simple_repeat Simple_repeat 4 138 0 1 1497 595 256 65 35 chr4 119573951 119574121 -36055999 + MER2 DNA MER2_type 171 345 0 1 1497 191 227 0 83 chr4 119574479 119574527 -36055593 + MIR3 SINE MIR 116 159 -49 1 1497 211 288 123 0 chr4 119574849 119574922 -36055198 - L3 LINE CR1 -439 4050 3969 1 1497 633 27 0 0 chr4 119575949 119576024 -36054096 + (GGGAGA)n Simple_repeat Simple_repeat 4 78 0 1 1497 182 272 31 102 chr4 119577638 119577765 -36052355 + L3 LINE CR1 844 961 -3528 1 1497 196 318 111 44 chr4 119578731 119578866 -36051254 + MIR3 SINE MIR 3 146 -62 1 1497 478 321 72 39 chr4 119578878 119579209 -36050911 + MER2 DNA MER2_type 1 342 -3 1 1497 1011 281 61 14 chr4 119579979 119580244 -36049876 + Tigger7 DNA MER2_type 38 315 -2176 1 1497 4328 51 0 0 chr4 119580244 119580757 -36049363 - L1Md_T LINE L1 0 6582 6070 1 1497 1011 281 61 14 chr4 119580757 119580787 -36049333 + Tigger7 DNA MER2_type 316 347 -2144 1 1497 509 0 16 0 chr4 119580955 119581016 -36049104 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1497 186 269 57 43 chr4 119581344 119581414 -36048706 - MIRb SINE MIR -161 107 37 1 1497 451 216 20 0 chr4 119582522 119582734 -36047386 + (TG)n Simple_repeat Simple_repeat 1 216 0 1 1497 431 198 12 24 chr4 119582753 119582836 -36047284 + ID4_ SINE ID 1 82 -1 1 1497 867 206 131 0 chr4 119585505 119585704 -36044416 - URR1A DNA MER1_type 0 226 2 1 1497 747 152 25 30 chr4 119585918 119586314 -36043806 + (TG)n Simple_repeat Simple_repeat 1 393 0 1 1497 690 292 52 103 chr4 119586337 119586627 -36043493 - B4A SINE B4 -16 276 2 1 1497 321 26 0 0 chr4 119587014 119587052 -36043068 + (CAGCC)n Simple_repeat Simple_repeat 3 40 0 1 1497 315 176 0 105 chr4 119587356 119587432 -36042688 + B2_Mm2 SINE B2 2 69 -126 1 1497 251 330 107 57 chr4 119587513 119587757 -36042363 - MLT1H LTR MaLR -117 432 177 1 1497 189 139 0 0 chr4 119588229 119588247 -36041873 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1497 1688 31 0 0 chr4 119588247 119588440 -36041680 - B2_Mm1a SINE B2 0 193 1 1 1497 189 139 0 0 chr4 119588440 119588457 -36041663 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1497 243 0 0 0 chr4 119588872 119588899 -36041221 + (CCA)n Simple_repeat Simple_repeat 3 29 0 1 1497 1124 325 84 14 chr4 119589361 119589851 -36040269 + MT2A LTR ERVL 10 533 0 1 1497 519 277 7 54 chr4 119590048 119590197 -36039923 - ID_B1 SINE B4 -6 218 77 1 1497 623 221 179 6 chr4 119590225 119590398 -36039722 - B3 SINE B2 -10 206 4 1 1497 326 277 283 13 chr4 119590644 119590955 -36039165 + L1MD3 LINE L1 7425 7819 -176 1 1497 243 240 147 0 chr4 119590956 119591031 -36039089 + L1MC4a LINE L1 7782 7867 -15 1 1497 273 198 89 138 chr4 119591134 119591257 -36038863 + PB1D7 SINE Alu 3 119 -1 1 1497 278 236 45 0 chr4 119591575 119591664 -36038456 + (TG)n Simple_repeat Simple_repeat 1 93 0 1 1497 783 288 69 30 chr4 119591693 119591926 -36038194 - B4A SINE B4 -42 250 9 1 1497 892 126 83 39 chr4 119592077 119592258 -36037862 - B2_Mm2 SINE B2 -6 189 1 1 1497 223 93 23 23 chr4 119592880 119592924 -36037196 + (TCTCC)n Simple_repeat Simple_repeat 3 46 0 1 1497 1244 79 0 6 chr4 119593062 119593241 -36036879 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1 1497 761 299 80 40 chr4 119593747 119594071 -36036049 + ORR1E LTR MaLR 1 337 -22 1 1497 683 311 47 71 chr4 119595111 119595450 -36034670 - MLT1J LTR MaLR -28 484 154 1 1497 679 204 61 0 chr4 119596140 119596287 -36033833 - B2_Mm2 SINE B2 -10 185 30 1 1497 360 243 118 32 chr4 119596263 119596294 -36033826 - RMER17C LTR ERVK -105 305 275 1 1497 333 0 0 0 chr4 119596294 119596331 -36033789 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1497 360 243 118 32 chr4 119596331 119596486 -36033634 - RMER17C LTR ERVK -136 274 103 1 1497 1369 147 30 4 chr4 119596469 119596701 -36033419 - ORR1B1 LTR MaLR -156 238 1 1 1497 236 287 42 84 chr4 119596720 119596815 -36033305 - MIRc SINE MIR -113 155 65 1 1497 1031 202 90 0 chr4 119597205 119597393 -36032727 - B3 SINE B2 -11 205 1 1 1497 448 302 8 8 chr4 119597551 119597681 -36032439 - MIR SINE MIR -56 206 77 1 1497 888 181 51 6 chr4 119598087 119598243 -36031877 + RSINE1 SINE B4 3 165 0 1 1497 3379 39 3 0 chr4 119599038 119599422 -36030698 - IAPEY_LTR LTR ERVK 0 385 1 1 1497 21178 47 3 6 chr4 119599424 119602140 -36027980 - IAPEy-int LTR ERVK -2 7511 4804 1 1497 2811 132 13 25 chr4 119602140 119602819 -36027301 - IAPEy-int LTR ERVK -6455 1058 1 1 1497 3368 42 3 0 chr4 119602819 119603203 -36026917 - IAPEY_LTR LTR ERVK 0 385 1 1 1497 580 260 96 30 chr4 119603473 119603608 -36026512 + B4A SINE B4 132 275 -17 1 1497 200 289 0 0 chr4 119603633 119603685 -36026435 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1497 325 246 12 0 chr4 119603700 119603871 -36026249 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1497 393 215 0 0 chr4 119603870 119603963 -36026157 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 1497 200 209 0 0 chr4 119603968 119604011 -36026109 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1497 307 71 24 0 chr4 119604012 119604054 -36026066 + HAL1-3A_ME LINE L1 1976 2018 -840 1 1497 803 269 114 11 chr4 119604369 119604640 -36025480 - MER33 DNA MER1_type -6 318 20 1 1497 271 282 91 55 chr4 119604703 119604868 -36025252 - MamGypLTR3 LTR Gypsy -472 367 197 1 1497 234 0 0 0 chr4 119605217 119605243 -36024877 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1497 297 183 0 0 chr4 119605900 119605960 -36024160 + (CTCA)n Simple_repeat Simple_repeat 1 60 0 1 1497 301 270 67 90 chr4 119606074 119606324 -36023796 + B4A SINE B4 1 292 0 1 1497 372 235 0 0 chr4 119606365 119606480 -36023640 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1497 209 260 0 0 chr4 119606502 119606552 -36023568 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1497 207 247 0 0 chr4 119606558 119606631 -36023489 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1 1497 308 96 72 121 chr4 119606661 119606678 -36023442 - L1MB3 LINE L1 -83 6100 6086 1 1497 981 103 0 0 chr4 119606678 119606853 -36023267 + (TC)n Simple_repeat Simple_repeat 1 175 0 1 1497 308 96 72 121 chr4 119606853 119606918 -36023202 - L1MB3 LINE L1 -98 6085 6022 1 1497 215 331 65 35 chr4 119608383 119608506 -36021614 - MIRc SINE MIR -83 179 51 1 1497 253 263 10 28 chr4 119608714 119608814 -36021306 + L2b LINE L2 2999 3090 -285 1 1497 345 284 45 101 chr4 119609356 119609674 -36020446 - ORR1E LTR MaLR -5 354 45 1 1497 342 0 0 0 chr4 119611625 119611663 -36018457 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1497 200 128 0 25 chr4 119612346 119612386 -36017734 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1 1497 607 228 51 51 chr4 119612420 119612577 -36017543 - RSINE1 SINE B4 -5 160 4 1 1497 26 0 0 0 chr4 119614185 119614211 -36015909 + AT_rich Low_complexity Low_complexity 1 26 0 1 1497 21 36 0 0 chr4 119614304 119614332 -36015788 + AT_rich Low_complexity Low_complexity 1 28 0 1 1497 1873 273 112 26 chr4 119614497 119615001 -36015119 - Lx6 LINE L1 -26 7434 6882 1 1497 1062 24 0 0 chr4 119615001 119615126 -36014994 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 1497 1873 273 112 26 chr4 119615126 119615203 -36014917 - Lx6 LINE L1 -579 6881 6803 1 1497 272 45 0 64 chr4 119615253 119615300 -36014820 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1497 421 266 64 0 chr4 119615405 119615514 -36014606 - PB1D10 SINE Alu -1 116 1 1 1497 397 286 99 25 chr4 119615876 119615987 -36014133 - L1MC4a LINE L1 -395 7600 7480 1 1497 1220 248 85 88 chr4 119615987 119616363 -36013757 + MTE2a LTR MaLR 5 379 0 1 1497 397 286 99 25 chr4 119616363 119616452 -36013668 - L1MC4a LINE L1 -516 7479 7385 1 1497 323 221 52 0 chr4 119616452 119616529 -36013591 - MLT1F1 LTR MaLR -480 89 9 1 1497 427 286 108 14 chr4 119616553 119616840 -36013280 - L1MC4a LINE L1 -608 7274 6961 1 1497 330 284 58 12 chr4 119616843 119617014 -36013106 - L1MC4a LINE L1 -832 7050 6872 1 1497 315 227 57 32 chr4 119617070 119617193 -36012927 - L1MC4a LINE L1 -1077 6918 6793 1 1497 633 168 0 63 chr4 119617485 119617612 -36012508 + B1_Mur1 SINE Alu 30 148 -1 1 1497 3499 126 114 19 chr4 119618081 119618711 -36011409 - RMER6C LTR ERVK 0 690 1 1 1497 1338 114 119 0 chr4 119618834 119619035 -36011085 - URR1B DNA MER1_type 0 225 1 1 1497 724 225 50 22 chr4 119620441 119620623 -36009497 - MER20 DNA MER1_type -4 215 29 1 1497 204 379 21 0 chr4 119621221 119621316 -36008804 - L2a LINE L2 -44 3382 3286 1 1497 318 296 80 75 chr4 119623134 119623335 -36006785 - RMER15 LTR ERVL -1 574 373 1 1497 222 406 0 40 chr4 119624233 119624301 -36005819 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1497 1536 176 151 3 chr4 119624301 119624626 -36005494 - ORR1D1 LTR MaLR -1 373 1 1 1497 422 264 7 20 chr4 119624629 119624780 -36005340 + (CA)n Simple_repeat Simple_repeat 1 148 0 1 1497 323 323 110 16 chr4 119625555 119625811 -36004309 + L1MB7 LINE L1 5830 6120 -63 1 1497 883 246 31 14 chr4 119626669 119626892 -36003228 + B4 SINE B4 66 292 0 1 1497 690 338 121 65 chr4 119627447 119628283 -36001837 - L1MD2 LINE L1 -215 6144 5262 2 1497 450 284 128 0 chr4 119628483 119628687 -36001433 - L1MD2 LINE L1 -1162 4984 4755 2 1497 513 0 0 0 chr4 119629091 119629148 -36000972 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1497 189 280 204 45 chr4 119629334 119629491 -36000629 + L2b LINE L2 2739 2920 -499 2 1497 192 358 15 0 chr4 119629799 119629866 -36000254 + L2b LINE L2 3308 3375 0 2 1497 894 159 134 12 chr4 119629898 119629917 -36000203 - B2_Mm2 SINE B2 -1 194 176 2 1497 387 0 0 0 chr4 119629917 119629960 -36000160 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 1497 894 159 134 12 chr4 119629960 119630112 -36000008 - B2_Mm2 SINE B2 -20 175 2 2 1497 405 86 0 0 chr4 119630140 119630198 -35999922 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1497 363 44 0 0 chr4 119630198 119630242 -35999878 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1497 515 289 12 56 chr4 119630248 119630409 -35999711 - RSINE1 SINE B4 -2 163 10 2 1497 1677 21 0 5 chr4 119630998 119631186 -35998934 - B2_Mm1t SINE B2 -6 187 1 2 1497 190 385 0 13 chr4 119632360 119632439 -35997681 - MIRm SINE MIR -89 187 110 2 1497 703 294 18 32 chr4 119632569 119632787 -35997333 + ID_B1 SINE B4 1 215 -9 2 1497 275 72 0 23 chr4 119632822 119632865 -35997255 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1497 259 294 185 0 chr4 119633025 119633144 -35996976 - B4 SINE B4 -140 152 12 2 1497 258 287 43 0 chr4 119633890 119633980 -35996140 - MIR3 SINE MIR -53 155 65 2 1497 559 288 39 73 chr4 119634090 119634103 -35996017 - CYRA11_Mm Unknown Y-chromosome -219 398 320 2 1497 1122 171 18 22 chr4 119634103 119634325 -35995795 + URR1A DNA MER1_type 6 226 0 2 1497 559 288 39 73 chr4 119634325 119634349 -35995771 - CYRA11_Mm Unknown Y-chromosome -219 319 149 2 1497 278 219 31 0 chr4 119634410 119634474 -35995646 + CT-rich Low_complexity Low_complexity 5 70 0 2 1497 255 114 0 0 chr4 119634474 119634518 -35995602 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1497 186 306 0 0 chr4 119635033 119635082 -35995038 + MIR SINE MIR 203 251 -11 2 1497 202 277 0 0 chr4 119635103 119635150 -35994970 + (ATGGTG)n Simple_repeat Simple_repeat 6 52 0 2 1497 280 284 113 14 chr4 119636042 119636173 -35993947 - MIR SINE MIR -61 147 17 2 1497 356 241 13 0 chr4 119636657 119636736 -35993384 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 2 1497 932 151 6 0 chr4 119636736 119636915 -35993205 + GA-rich Low_complexity Low_complexity 1 180 0 2 1497 278 246 0 14 chr4 119636915 119636989 -35993131 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 2 1497 309 287 70 0 chr4 119638791 119638906 -35991214 + MIRc SINE MIR 71 193 -75 2 1497 256 227 101 20 chr4 119640005 119640104 -35990016 - MIRm SINE MIR -125 151 45 2 1497 202 302 0 31 chr4 119640163 119640228 -35989892 + MIR SINE MIR 75 137 -71 2 1497 1095 196 140 20 chr4 119640400 119640650 -35989470 - B4 SINE B4 -12 280 1 2 1497 197 270 170 9 chr4 119643455 119643567 -35986553 + MIR3 SINE MIR 13 142 -66 2 1497 517 311 47 0 chr4 119643591 119643739 -35986381 - RSINE1 SINE B4 -10 155 1 2 1497 472 168 29 29 chr4 119643955 119644059 -35986061 - PB1D10 SINE Alu 0 117 14 2 1497 268 300 9 57 chr4 119644611 119644717 -35985403 - MIRc SINE MIR -120 148 48 2 1497 254 207 219 0 chr4 119646358 119646440 -35983680 - MLT1E1A LTR MaLR -7 673 574 2 1497 244 268 0 18 chr4 119646568 119646625 -35983495 - MLT1E1A LTR MaLR -360 188 133 2 1497 248 315 0 14 chr4 119648029 119648103 -35982017 - RSINE1 SINE B4 -3 162 90 2 1497 213 299 0 0 chr4 119648845 119648912 -35981208 + C-rich Low_complexity Low_complexity 1 67 0 2 1497 251 224 0 33 chr4 119648960 119649020 -35981100 + (CACCC)n Simple_repeat Simple_repeat 3 60 0 2 1497 774 0 0 0 chr4 119649365 119649451 -35980669 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1497 243 0 0 0 chr4 119649764 119649791 -35980329 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1497 741 163 0 0 chr4 119649791 119649969 -35980151 + GA-rich Low_complexity Low_complexity 1 178 0 2 1497 390 21 0 0 chr4 119649969 119650016 -35980104 + (CAGAGA)n Simple_repeat Simple_repeat 1 47 0 2 1497 220 234 140 26 chr4 119650331 119650445 -35979675 - MIRc SINE MIR -116 152 26 2 1497 1266 74 0 0 chr4 119651404 119651579 -35978541 + (GGGA)n Simple_repeat Simple_repeat 3 177 0 2 1497 657 98 0 0 chr4 119652454 119652566 -35977554 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 1497 432 0 0 0 chr4 119652566 119652614 -35977506 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1497 411 279 40 12 chr4 119652640 119652806 -35977314 + MIRc SINE MIR 29 196 -72 2 1497 270 116 0 0 chr4 119653033 119653076 -35977044 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2 1497 442 198 12 0 chr4 119653084 119653165 -35976955 - ID4 SINE ID 0 83 2 2 1497 207 156 0 0 chr4 119653918 119653950 -35976170 + (CCCCAG)n Simple_repeat Simple_repeat 3 34 0 2 1497 290 169 15 0 chr4 119654202 119654267 -35975853 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1497 232 325 86 69 chr4 119654665 119654840 -35975280 + L2 LINE L2 2789 2966 -453 2 1497 185 323 153 0 chr4 119655708 119655832 -35974288 + MIR3 SINE MIR 30 172 -36 2 1497 914 329 74 29 chr4 119655977 119656597 -35973523 - L1MB1 LINE L1 -7 6161 5514 2 1497 390 57 0 0 chr4 119656738 119656791 -35973329 + (CCCTAA)n Simple_repeat Simple_repeat 2 54 0 2 1497 1047 220 22 18 chr4 119657594 119657816 -35972304 + ID_B1 SINE B4 1 223 -1 2 1497 280 293 0 0 chr4 119658171 119658246 -35971874 - Lx7 LINE L1 -385 7311 7237 2 1497 187 340 93 0 chr4 119658889 119658986 -35971134 - MIRb SINE MIR -145 123 18 2 1497 345 131 0 0 chr4 119659714 119659775 -35970345 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1497 225 0 0 0 chr4 119660089 119660114 -35970006 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1497 261 330 19 10 chr4 119660243 119660347 -35969773 + CT-rich Low_complexity Low_complexity 1 105 0 2 1497 348 287 0 11 chr4 119661219 119661314 -35968806 + PB1D10 SINE Alu 3 96 -21 2 1497 227 134 75 0 chr4 119661409 119661476 -35968644 + GA-rich Low_complexity Low_complexity 1 72 0 2 1497 187 329 82 0 chr4 119662457 119662530 -35967590 + L2b LINE L2 3288 3366 -9 2 1497 348 328 83 13 chr4 119663450 119663680 -35966440 + MIR SINE MIR 3 250 -12 2 1497 338 327 0 10 chr4 119665585 119665687 -35964433 - MER58A DNA MER1_type -119 105 5 2 1497 304 359 53 8 chr4 119666742 119666874 -35963246 - MIRb SINE MIR -27 241 104 2 1497 287 343 39 0 chr4 119667183 119667285 -35962835 + MIRc SINE MIR 111 216 -52 2 1497 194 350 48 0 chr4 119667532 119667635 -35962485 - L2b LINE L2 -3 3372 3265 2 1497 394 75 30 0 chr4 119667826 119667893 -35962227 + (TGG)n Simple_repeat Simple_repeat 1 69 0 2 1497 429 311 17 46 chr4 119667930 119668105 -35962015 - HAL1-2a_MD LINE L1 -517 2507 2338 2 1497 372 312 55 18 chr4 119668112 119668275 -35961845 - HAL1-2a_MD LINE L1 -504 2520 2352 2 1497 236 269 6 36 chr4 119668348 119668514 -35961606 + (ATGGTG)n Simple_repeat Simple_repeat 5 165 0 2 1497 588 263 23 23 chr4 119668523 119668698 -35961422 - HAL1-2a_MD LINE L1 -509 2515 2341 2 1498 608 26 13 0 chr4 119669422 119669500 -35960620 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 2 1498 2679 134 30 0 chr4 119670443 119670876 -35959244 - Lx3C LINE L1 -419 6557 6112 2 1498 198 0 0 0 chr4 119671037 119671059 -35959061 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1498 272 240 121 30 chr4 119672316 119672415 -35957705 + ID_B1 SINE B4 95 202 -22 2 1498 199 272 11 11 chr4 119672415 119672508 -35957612 + GA-rich Low_complexity Low_complexity 5 97 0 2 1498 183 286 15 45 chr4 119672626 119672692 -35957428 + MIRc SINE MIR 46 109 -159 2 1498 232 324 0 14 chr4 119673001 119673070 -35957050 + CT-rich Low_complexity Low_complexity 2 69 0 2 1498 472 211 96 0 chr4 119673070 119673174 -35956946 - PB1D9 SINE Alu -1 119 6 2 1498 286 254 0 0 chr4 119673214 119673277 -35956843 - ID4 SINE ID -18 65 3 2 1498 305 237 16 109 chr4 119673278 119673406 -35956714 - PB1D10 SINE Alu 0 117 2 2 1498 561 52 0 0 chr4 119673456 119673533 -35956587 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1498 555 16 0 0 chr4 119674090 119674154 -35955966 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1498 231 88 0 0 chr4 119674574 119674608 -35955512 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 2 1498 245 213 16 16 chr4 119674627 119674689 -35955431 - PB1D10 SINE Alu -44 73 12 2 1498 1286 165 8 47 chr4 119674743 119674978 -35955142 + URR1A DNA MER1_type 1 226 0 2 1498 695 247 107 0 chr4 119674978 119675168 -35954952 - ID_B1 SINE B4 -9 215 6 2 1498 209 311 57 40 chr4 119675926 119676050 -35954070 + MIRb SINE MIR 123 248 -20 2 1498 2173 92 30 59 chr4 119676763 119677100 -35953020 - ORR1A2 LTR MaLR 0 327 1 2 1498 857 75 75 0 chr4 119677121 119677254 -35952866 + B1_Mus1 SINE Alu 6 148 0 2 1498 349 276 229 29 chr4 119678014 119678219 -35951901 + MIRb SINE MIR 23 268 0 2 1498 867 326 85 47 chr4 119678439 119678931 -35951189 + MER82 DNA MER2_type 2 512 -141 2 1498 321 282 65 45 chr4 119679087 119679313 -35950807 - MLT1A0 LTR MaLR -33 341 30 2 1498 229 378 127 21 chr4 119679318 119679332 -35950788 - B3 SINE B2 -3 213 10 2 1498 548 247 29 118 chr4 119679332 119679502 -35950618 - RSINE1 SINE B4 0 165 11 2 1498 248 305 43 142 chr4 119679771 119679831 -35950289 - MIR SINE MIR -25 237 180 2 1498 226 291 221 0 chr4 119679831 119679917 -35950203 - PB1 SINE Alu -19 108 4 2 1498 248 305 43 142 chr4 119679917 119680089 -35950031 - MIR SINE MIR -83 179 28 2 1498 243 243 28 28 chr4 119682049 119682121 -35947999 + Charlie24 DNA MER1_type 2379 2450 0 2 1498 263 317 199 10 chr4 119682619 119682820 -35947300 + L2a LINE L2 3022 3260 -166 2 1498 261 290 60 22 chr4 119684716 119684850 -35945270 + MIR3 SINE MIR 35 173 -35 2 1498 376 295 32 57 chr4 119685296 119685454 -35944666 - B4A SINE B4 0 292 139 3 1498 205 307 53 0 chr4 119686521 119686596 -35943524 - L2c LINE L2 -43 3344 3266 3 1498 831 284 21 77 chr4 119687323 119687609 -35942511 + B4A SINE B4 2 271 -21 3 1498 299 265 83 56 chr4 119687794 119687938 -35942182 + MIRb SINE MIR 113 260 -8 3 1498 180 0 0 0 chr4 119687949 119687969 -35942151 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1498 243 0 0 0 chr4 119688017 119688044 -35942076 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 3 1498 202 307 193 0 chr4 119690609 119690723 -35939397 - MIRb SINE MIR -82 186 51 3 1498 1002 127 17 23 chr4 119691570 119691747 -35938373 - URR1A DNA MER1_type 0 226 51 3 1498 957 268 106 31 chr4 119691770 119692128 -35937992 + MTD LTR MaLR 35 419 0 3 1498 232 318 85 88 chr4 119692653 119692984 -35937136 - L2b LINE L2 -74 3301 2972 3 1498 1212 93 0 0 chr4 119694246 119694418 -35935702 + (TCTCC)n Simple_repeat Simple_repeat 4 175 0 3 1498 949 287 3 76 chr4 119694431 119694721 -35935399 + B4A SINE B4 3 271 -21 3 1498 222 37 0 0 chr4 119694732 119694759 -35935361 + (CATA)n Simple_repeat Simple_repeat 4 30 0 3 1498 351 0 0 0 chr4 119694759 119694797 -35935323 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1498 492 211 167 6 chr4 119695462 119695624 -35934496 + MER121 Unknown Unknown 107 294 -118 3 1498 429 20 0 0 chr4 119697096 119697146 -35932974 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1498 276 308 39 93 chr4 119697237 119697366 -35932754 - B4A SINE B4 -144 148 27 3 1498 364 309 50 22 chr4 119697465 119697604 -35932516 + ID_B1 SINE B4 81 223 -1 3 1498 484 347 45 94 chr4 119698155 119698166 -35931954 - MLT2B4 LTR ERVL -49 365 359 3 1498 399 21 0 0 chr4 119698166 119698214 -35931906 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1498 618 320 87 37 chr4 119698214 119698584 -35931536 - MLT2B4 LTR ERVL -56 358 3 3 1498 370 269 33 100 chr4 119701159 119701279 -35928841 + B1F2 SINE Alu 2 113 -36 3 1498 456 19 0 0 chr4 119701825 119701878 -35928242 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1498 372 93 40 0 chr4 119701878 119701952 -35928168 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1498 350 74 19 0 chr4 119701952 119702006 -35928114 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1498 396 0 0 0 chr4 119702329 119702373 -35927747 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1498 495 0 0 0 chr4 119702373 119702427 -35927693 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1498 35 63 0 0 chr4 119705334 119705397 -35924723 + GC_rich Low_complexity Low_complexity 1 63 0 3 1498 180 125 0 0 chr4 119705417 119705449 -35924671 + (CCGAG)n Simple_repeat Simple_repeat 5 36 0 3 1498 227 161 18 0 chr4 119705482 119705538 -35924582 + (CAGCG)n Simple_repeat Simple_repeat 3 59 0 3 1498 457 254 23 16 chr4 119706698 119706826 -35923294 - MER103 DNA DNA -15 151 23 3 1498 279 0 0 0 chr4 119707517 119707548 -35922572 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1498 256 293 116 36 chr4 119708791 119708929 -35921191 + MIR SINE MIR 113 261 -1 3 1498 613 231 112 0 chr4 119709039 119709173 -35920947 - RSINE1 SINE B4 -12 153 5 3 1498 1301 190 136 25 chr4 119709910 119710234 -35919886 - MTEa LTR MaLR -14 365 6 3 1498 457 318 58 34 chr4 119712774 119712979 -35917141 + L1MD3 LINE L1 7709 7918 -77 3 1498 647 315 89 16 chr4 119713035 119713293 -35916827 + B4A SINE B4 6 282 -10 3 1498 288 91 0 0 chr4 119713384 119713428 -35916692 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 3 1498 2088 143 69 12 chr4 119714060 119714406 -35915714 - ORR1B2 LTR MaLR -1 366 1 3 1498 863 233 21 16 chr4 119714608 119714800 -35915320 - ID_B1 SINE B4 0 224 32 3 1498 267 308 106 91 chr4 119716040 119716238 -35913882 + MIRb SINE MIR 48 247 -29 3 1498 333 0 0 0 chr4 119716931 119716968 -35913152 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1498 258 108 15 30 chr4 119716974 119717041 -35913079 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 3 1498 459 252 8 73 chr4 119717042 119717166 -35912954 - PB1D7 SINE Alu -4 116 1 3 1498 483 314 7 7 chr4 119717177 119717318 -35912802 - ID_B1 SINE B4 0 224 84 3 1498 202 209 0 0 chr4 119717337 119717380 -35912740 + GA-rich Low_complexity Low_complexity 2 44 0 3 1498 285 360 73 16 chr4 119717879 119718071 -35912049 - L3 LINE CR1 -754 3735 3533 3 1498 272 381 55 2 chr4 119718446 119718629 -35911491 - MIRc SINE MIR -58 210 11 3 1498 183 80 0 0 chr4 119720129 119720154 -35909966 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1498 234 0 0 0 chr4 119720179 119720205 -35909915 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1498 422 347 82 96 chr4 119720287 119720765 -35909355 + MLT1D LTR MaLR 18 488 -17 3 1498 207 269 179 21 chr4 119721305 119721400 -35908720 - MIR3 SINE MIR -52 156 47 3 1498 1282 78 72 0 chr4 119721994 119722153 -35907967 + B2_Mm1a SINE B2 1 160 -33 3 1498 495 0 0 0 chr4 119722153 119722208 -35907912 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 3 1498 1282 78 72 0 chr4 119722208 119722228 -35907892 + B2_Mm1a SINE B2 161 192 -1 3 1498 228 238 0 0 chr4 119722385 119722448 -35907672 + (TATG)n Simple_repeat Simple_repeat 4 66 0 3 1498 807 258 120 27 chr4 119722457 119722716 -35907404 - B4 SINE B4 -8 284 2 3 1498 209 365 19 71 chr4 119725003 119725215 -35904905 - MIRb SINE MIR -9 259 59 3 1498 2357 142 47 2 chr4 119725398 119725799 -35904321 - MTC LTR MaLR 0 421 3 3 1498 321 26 0 0 chr4 119726206 119726244 -35903876 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1498 259 287 20 31 chr4 119726450 119726548 -35903572 - MIR SINE MIR -101 167 65 3 1498 204 255 29 0 chr4 119726609 119726681 -35903439 + MIRb SINE MIR 106 187 -81 3 1498 329 273 48 11 chr4 119728065 119728185 -35901935 - MIRc SINE MIR -60 148 26 3 1498 1422 54 16 5 chr4 119728359 119728546 -35901574 + B2_Mm2 SINE B2 2 190 -5 3 1498 430 315 40 44 chr4 119729066 119729315 -35900805 - L1MB3 LINE L1 0 6183 5936 3 1498 615 244 192 11 chr4 119729336 119729518 -35900602 + ID_B1 SINE B4 1 215 -9 3 1498 315 0 0 0 chr4 119729519 119729554 -35900566 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1498 318 26 0 0 chr4 119729712 119729751 -35900369 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1498 518 236 0 0 chr4 119730875 119730981 -35899139 - PB1D10 SINE Alu -9 108 3 3 1498 1577 182 114 3 chr4 119731003 119731345 -35898775 + MTD LTR MaLR 39 418 -1 3 1498 236 277 0 126 chr4 119732101 119732153 -35897967 - ID4_ SINE ID 0 83 36 3 1498 995 153 97 19 chr4 119732153 119732360 -35897760 + URR1B DNA MER1_type 3 225 0 3 1498 236 277 0 126 chr4 119732360 119732402 -35897718 - ID4_ SINE ID -48 35 1 3 1498 325 250 34 45 chr4 119732975 119733063 -35897057 - PB1D10 SINE Alu -26 91 5 3 1498 1183 241 99 10 chr4 119733944 119734329 -35895791 + MTD LTR MaLR 1 419 0 3 1498 202 366 118 16 chr4 119735968 119736154 -35893966 + L3 LINE CR1 3797 4001 -488 3 1498 390 324 39 60 chr4 119736861 119737094 -35893026 - MLT1E2 LTR MaLR -181 446 219 3 1498 687 84 0 0 chr4 119738281 119738376 -35891744 + (GGGA)n Simple_repeat Simple_repeat 4 98 0 3 1498 285 229 0 16 chr4 119738453 119738515 -35891605 - PB1D10 SINE Alu -9 108 48 3 1498 479 45 0 0 chr4 119739009 119739076 -35891044 - L1Md_F2 LINE L1 -14 6568 6502 3 1498 212 233 50 0 chr4 119739121 119739181 -35890939 + MIR SINE MIR 109 171 -91 3 1498 239 250 63 63 chr4 119739411 119739522 -35890598 - MIR SINE MIR -86 176 66 3 1498 326 287 113 30 chr4 119740609 119740742 -35889378 + MER58A DNA MER1_type 2 145 -79 3 1498 742 301 20 16 chr4 119740889 119741142 -35888978 + B4A SINE B4 24 277 -15 3 1498 336 127 0 0 chr4 119741144 119741199 -35888921 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1498 217 171 97 28 chr4 119741222 119741294 -35888826 + B3A SINE B2 1 77 -121 3 1498 633 341 32 60 chr4 119741235 119741519 -35888601 + B4A SINE B4 17 292 0 3 1498 270 73 0 0 chr4 119741528 119741569 -35888551 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1498 356 290 128 6 chr4 119743456 119743612 -35886508 + MIR SINE MIR 61 235 -27 3 1498 247 283 14 2 chr4 119744090 119744181 -35885939 - MIRc SINE MIR -59 149 59 3 1498 203 312 0 0 chr4 119744346 119744394 -35885726 + (CAGG)n Simple_repeat Simple_repeat 1 48 0 3 1498 227 319 6 0 chr4 119745470 119745627 -35884493 + (CA)n Simple_repeat Simple_repeat 1 158 0 3 1498 30 0 0 0 chr4 119746198 119746228 -35883892 + AT_rich Low_complexity Low_complexity 1 30 0 3 1498 199 253 105 13 chr4 119746266 119746342 -35883778 + MIR3 SINE MIR 91 173 -35 3 1498 1171 47 29 0 chr4 119747307 119747478 -35882642 + (TC)n Simple_repeat Simple_repeat 2 177 0 3 1498 463 255 47 9 chr4 119749440 119749547 -35880573 + RSINE1 SINE B4 55 165 0 3 1498 483 48 0 0 chr4 119749566 119749628 -35880492 + (TAA)n Simple_repeat Simple_repeat 2 63 0 3 1498 336 235 69 39 chr4 119749746 119749848 -35880272 + MT2B LTR ERVL 154 258 -343 3 1498 693 145 75 22 chr4 119749761 119749895 -35880225 + B1_Mur4 SINE Alu 10 150 0 3 1498 598 276 123 44 chr4 119750184 119750525 -35879595 + L1MA6 LINE L1 5926 6293 -7 3 1498 199 303 159 32 chr4 119751746 119751872 -35878248 + MIR SINE MIR 53 194 -74 3 1498 547 242 11 0 chr4 119751925 119752103 -35878017 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 3 1498 377 255 7 0 chr4 119752115 119752256 -35877864 + (CAGC)n Simple_repeat Simple_repeat 1 142 0 3 1498 459 0 0 0 chr4 119752601 119752652 -35877468 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1498 732 229 29 0 chr4 119753755 119753930 -35876190 - MLT2D LTR ERVL -232 182 3 4 1498 458 212 17 26 chr4 119754212 119754328 -35875792 + URR1B DNA MER1_type 83 197 -28 4 1498 443 185 171 44 chr4 119755860 119756018 -35874102 - B3A SINE B2 -18 180 3 4 1498 474 268 49 0 chr4 119756805 119756947 -35873173 + Lx7 LINE L1 7176 7324 -372 4 1498 185 94 0 30 chr4 119757857 119757890 -35872230 + (TATG)n Simple_repeat Simple_repeat 3 34 0 4 1498 531 0 0 0 chr4 119757953 119758012 -35872108 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1498 803 169 64 21 chr4 119758128 119758315 -35871805 - B2_Mm2 SINE B2 0 195 1 4 1498 371 279 97 28 chr4 119758336 119758599 -35871521 - L1ME3 LINE L1 -325 5837 5559 4 1498 481 316 140 35 chr4 119759033 119759095 -35871025 + L1M3 LINE L1 4159 4224 -1656 4 1498 397 310 6 55 chr4 119759095 119759259 -35870861 + RSINE1 SINE B4 3 158 -7 4 1498 1882 233 136 21 chr4 119759259 119759990 -35870130 + L1M3 LINE L1 4225 5065 -1075 4 1498 545 289 0 0 chr4 119760061 119760203 -35869917 + B4A SINE B4 1 142 -150 4 1498 297 307 57 28 chr4 119760215 119760356 -35869764 - B4A SINE B4 -77 215 71 4 1498 750 293 57 20 chr4 119760376 119760872 -35869248 - L1ME3 LINE L1 -684 5499 4982 4 1498 492 86 0 0 chr4 119761135 119761205 -35868915 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1498 572 284 60 20 chr4 119761250 119761401 -35868719 - RSINE1 SINE B4 -8 157 1 4 1498 312 322 17 9 chr4 119762163 119762279 -35867841 + MIR SINE MIR 112 228 -34 4 1498 319 269 276 6 chr4 119763573 119763803 -35866317 + MLT1D LTR MaLR 28 340 -287 4 1498 279 0 0 0 chr4 119764326 119764357 -35865763 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1498 198 0 0 0 chr4 119764357 119764378 -35865742 + (CG)n Simple_repeat Simple_repeat 1 22 0 4 1498 447 52 0 0 chr4 119764576 119764634 -35865486 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1498 348 223 0 113 chr4 119765587 119765693 -35864427 + MT2B LTR ERVL 164 257 -344 4 1498 589 165 0 0 chr4 119765600 119765697 -35864423 + B1_Mus1 SINE Alu 11 107 -41 4 1498 1269 68 0 0 chr4 119765704 119765881 -35864239 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1498 185 244 242 11 chr4 119772062 119772153 -35857967 - L3 LINE CR1 -552 3937 3826 4 1498 386 246 53 56 chr4 119772842 119772975 -35857145 - MTEb LTR MaLR -24 355 221 4 1498 900 47 150 0 chr4 119772975 119773102 -35857018 + B1_Mm SINE Alu 2 147 0 4 1498 379 333 52 49 chr4 119773102 119773299 -35856821 - MTEb LTR MaLR -135 224 26 4 1498 252 278 167 68 chr4 119773318 119773480 -35856640 - MIRb SINE MIR -36 232 55 4 1498 322 109 47 0 chr4 119773506 119773570 -35856550 + T-rich Low_complexity Low_complexity 3 69 0 4 1498 447 250 218 11 chr4 119773971 119774145 -35855975 - MIRb SINE MIR -25 243 34 4 1498 489 228 95 26 chr4 119774729 119774913 -35855207 + MIR SINE MIR 18 189 -87 4 1498 582 235 61 9 chr4 119775322 119775467 -35854653 + B3A SINE B2 2 151 -44 4 1498 429 20 0 0 chr4 119775467 119775517 -35854603 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1498 405 239 110 81 chr4 119775517 119775544 -35854576 + B2_Mm2 SINE B2 152 178 -17 4 1498 182 353 48 10 chr4 119775573 119775676 -35854444 - MIR3 SINE MIR -90 118 12 4 1498 234 0 0 0 chr4 119777302 119777328 -35852792 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1498 2203 109 31 20 chr4 119778154 119778509 -35851611 + RLTR15 LTR ERVK 1 359 0 4 1498 1665 157 144 27 chr4 119779408 119779604 -35850516 - ORR1D1 LTR MaLR -1 373 177 4 1498 279 0 0 0 chr4 119779604 119779635 -35850485 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1498 1665 157 144 27 chr4 119779635 119779772 -35850348 - ORR1D1 LTR MaLR -198 176 3 4 1498 360 0 0 0 chr4 119780997 119781037 -35849083 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1498 416 227 99 9 chr4 119781041 119781152 -35848968 + B3 SINE B2 95 215 -1 4 1498 1254 156 38 33 chr4 119781159 119781371 -35848749 + B3 SINE B2 1 213 -3 4 1498 316 371 65 18 chr4 119781399 119781616 -35848504 + L2 LINE L2 1877 2103 -1316 4 1498 880 101 18 25 chr4 119782078 119782241 -35847879 - RLTR10 LTR ERVK -2 388 227 4 1498 2149 70 12 27 chr4 119782292 119782628 -35847492 - RLTR10 LTR ERVK -59 331 1 4 1498 8412 27 4 0 chr4 119782628 119783619 -35846501 - RLTR10-int LTR ERVK -1 1986 992 4 1498 386 311 7 7 chr4 119783702 119783851 -35846269 - RLTR10-int LTR ERVK -5987 1594 1446 4 1498 7875 32 2 2 chr4 119783896 119784854 -35845266 - RLTR10-int LTR ERVK -989 998 41 4 1498 911 88 31 25 chr4 119784864 119785027 -35845093 - RLTR10 LTR ERVK 0 390 227 4 1498 250 148 33 0 chr4 119785033 119785094 -35845026 - RLTR10 LTR ERVK -69 321 259 4 1498 2181 70 13 6 chr4 119785115 119785431 -35844689 - RLTR10 LTR ERVK -72 318 1 4 1498 239 343 46 0 chr4 119785459 119785567 -35844553 - L2 LINE L2 -1054 2365 2253 4 1498 900 99 0 0 chr4 119785950 119786092 -35844028 + (TG)n Simple_repeat Simple_repeat 2 143 0 4 1498 186 143 0 0 chr4 119786366 119786401 -35843719 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 4 1498 725 298 38 13 chr4 119786427 119786665 -35843455 + MTEa LTR MaLR 3 246 -133 4 1498 279 284 0 0 chr4 119786685 119786752 -35843368 + MTEa LTR MaLR 313 379 0 4 1498 359 378 61 0 chr4 119788946 119789176 -35840944 + MIR SINE MIR 6 249 -13 4 1498 315 0 0 0 chr4 119790141 119790176 -35839944 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1498 259 182 15 0 chr4 119790247 119790313 -35839807 + (CTG)n Simple_repeat Simple_repeat 1 67 0 4 1498 2291 94 0 3 chr4 119790749 119791069 -35839051 - ORR1A3 LTR MaLR -7 319 1 4 1498 205 338 78 0 chr4 119791160 119791237 -35838883 + MIRm SINE MIR 101 183 -93 4 1498 933 91 24 0 chr4 119791659 119791820 -35838300 + B2_Mm2 SINE B2 2 179 -37 4 1498 279 0 0 0 chr4 119791820 119791851 -35838269 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1498 766 197 48 27 chr4 119791851 119791877 -35838243 + B2_Mm1t SINE B2 172 192 -1 4 1498 192 362 0 0 chr4 119792050 119792119 -35838001 - MIRm SINE MIR -17 259 191 4 1498 459 0 0 0 chr4 119793541 119793592 -35836528 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 4 1498 439 366 16 16 chr4 119794732 119794921 -35835199 - RLTR12B LTR ERVK -321 207 19 4 1498 191 274 41 0 chr4 119794946 119795019 -35835101 + MIRc SINE MIR 55 130 -138 4 1498 211 98 23 47 chr4 119797859 119797902 -35832218 + (TCTCTG)n Simple_repeat Simple_repeat 5 46 0 4 1498 200 370 25 0 chr4 119798746 119798827 -35831293 + MIR SINE MIR 35 117 -91 4 1498 465 19 0 0 chr4 119799498 119799552 -35830568 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1499 224 303 24 39 chr4 119800982 119801109 -35829011 + CT-rich Low_complexity Low_complexity 2 126 0 4 1499 431 349 7 0 chr4 119802038 119802187 -35827933 - L2 LINE L2 -753 2666 2517 4 1499 335 321 14 82 chr4 119804014 119804160 -35825960 + MIR SINE MIR 90 225 -37 4 1499 204 135 0 0 chr4 119804432 119804469 -35825651 + (GGA)n Simple_repeat Simple_repeat 1 37 0 4 1499 216 0 0 0 chr4 119807200 119807224 -35822896 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 4 1499 240 245 0 0 chr4 119807666 119807719 -35822401 + (CACCC)n Simple_repeat Simple_repeat 4 56 0 4 1499 531 0 0 0 chr4 119808126 119808185 -35821935 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1499 247 182 15 29 chr4 119808972 119809040 -35821080 + C-rich Low_complexity Low_complexity 2 68 0 4 1499 304 316 53 0 chr4 119810357 119810452 -35819668 + L1MEe LINE L1 709 808 -4046 4 1499 24 0 0 0 chr4 119810592 119810616 -35819504 + AT_rich Low_complexity Low_complexity 1 24 0 4 1499 851 220 0 57 chr4 119810685 119810878 -35819242 - B3A SINE B2 -3 195 14 4 1499 233 298 85 34 chr4 119810773 119810891 -35819229 - B4A SINE B4 -165 127 4 4 1499 341 275 12 0 chr4 119811174 119811254 -35818866 + 5S rRNA rRNA 2 82 -39 4 1499 545 276 26 7 chr4 119811497 119811650 -35818470 + MIRb SINE MIR 53 208 -60 4 1499 1298 222 138 8 chr4 119812773 119813127 -35816993 - MTD LTR MaLR 0 419 20 4 1499 279 361 43 19 chr4 119813398 119813559 -35816561 - MLT1I LTR MaLR 0 411 247 4 1499 592 296 113 66 chr4 119813633 119813995 -35816125 + MTEa LTR MaLR 1 379 0 4 1499 388 242 55 0 chr4 119814508 119814599 -35815521 + B1F1 SINE Alu 3 98 -51 4 1499 198 71 0 0 chr4 119815637 119815665 -35814455 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 4 1499 385 279 12 0 chr4 119816300 119816386 -35813734 + B4A SINE B4 204 290 -2 4 1499 216 260 11 48 chr4 119816390 119816576 -35813544 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 4 1499 294 29 0 0 chr4 119816579 119816614 -35813506 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1499 362 248 30 53 chr4 119817608 119817826 -35812294 + MIR SINE MIR 37 262 0 4 1499 284 340 43 0 chr4 119818020 119818114 -35812006 + MIRb SINE MIR 33 130 -138 4 1499 1142 199 5 28 chr4 119819540 119819757 -35810363 + ID_B1 SINE B4 4 215 -9 4 1499 528 208 0 10 chr4 119819809 119819911 -35810209 + ID_B1 SINE B4 115 215 -9 4 1499 539 29 14 0 chr4 119820005 119820074 -35810046 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1499 252 0 0 0 chr4 119822292 119822320 -35807800 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 4 1499 224 287 168 15 chr4 119823076 119823207 -35806913 + MIRb SINE MIR 84 234 -34 4 1499 1013 268 38 86 chr4 119823924 119824022 -35806098 + B4A SINE B4 1 86 -206 4 1499 366 23 0 0 chr4 119824022 119824065 -35806055 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 4 1499 1013 268 38 86 chr4 119824065 119824256 -35805864 + B4A SINE B4 87 276 -16 4 1499 365 353 45 26 chr4 119825180 119825334 -35804786 + MIRb SINE MIR 104 260 -8 4 1499 658 253 2 19 chr4 119826445 119826604 -35803516 + ID_B1 SINE B4 72 223 -1 4 1499 306 0 0 0 chr4 119827078 119827112 -35803008 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1499 701 163 6 0 chr4 119828571 119828749 -35801371 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 4 1499 1502 75 0 5 chr4 119828939 119829127 -35800993 + B2_Mm2 SINE B2 2 188 -7 4 1499 487 296 62 29 chr4 119829366 119829575 -35800545 + MIRb SINE MIR 46 261 -7 5 1499 242 310 111 8 chr4 119830812 119830929 -35799191 + MIRb SINE MIR 31 159 -109 5 1499 236 77 0 25 chr4 119832635 119832675 -35797445 + (TCC)n Simple_repeat Simple_repeat 1 39 0 5 1499 441 81 0 0 chr4 119832688 119832750 -35797370 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1499 459 0 0 0 chr4 119832750 119832800 -35797320 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1499 345 292 111 67 chr4 119832803 119833089 -35797031 - RSINE1 SINE B4 0 292 1 5 1499 360 0 0 0 chr4 119833099 119833139 -35796981 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 1499 380 282 23 0 chr4 119834808 119834916 -35795204 - MIRb SINE MIR -69 193 81 5 1499 534 31 0 0 chr4 119835103 119835167 -35794953 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1499 220 240 0 39 chr4 119835905 119835957 -35794163 + C-rich Low_complexity Low_complexity 2 51 0 5 1499 216 260 0 0 chr4 119837417 119837467 -35792653 - MIRc SINE MIR -135 133 84 5 1499 974 183 0 158 chr4 119837533 119837786 -35792334 - B3 SINE B2 0 216 4 5 1499 415 227 11 55 chr4 119838581 119838699 -35791421 - PB1D7 SINE Alu -2 148 26 5 1499 21 36 0 0 chr4 119839884 119839912 -35790208 + AT_rich Low_complexity Low_complexity 1 28 0 5 1499 330 356 13 42 chr4 119840703 119840928 -35789192 - MIR SINE MIR 0 268 41 5 1499 357 82 0 0 chr4 119840938 119840987 -35789133 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1499 633 230 18 73 chr4 119841295 119841459 -35788661 + RSINE1 SINE B4 11 165 0 5 1499 623 233 6 0 chr4 119841482 119841658 -35788462 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1499 585 250 36 55 chr4 119842727 119842892 -35787228 - RSINE1 SINE B4 0 165 4 5 1499 248 232 75 7 chr4 119843480 119843579 -35786541 + PB1 SINE Alu 35 125 -2 5 1499 805 206 0 0 chr4 119843610 119843756 -35786364 + B1_Mur2 SINE Alu 2 147 -2 5 1499 317 289 39 84 chr4 119843622 119843777 -35786343 + B4A SINE B4 99 246 -46 5 1499 389 234 11 11 chr4 119843829 119843924 -35786196 - ID_B1 SINE B4 -2 222 128 5 1499 252 0 0 0 chr4 119844286 119844314 -35785806 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 5 1499 426 321 25 63 chr4 119845492 119845784 -35784336 - ORR1E LTR MaLR 0 379 83 5 1499 183 42 0 0 chr4 119846000 119846024 -35784096 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 1499 390 362 0 8 chr4 119846463 119846591 -35783529 + G-rich Low_complexity Low_complexity 2 128 0 5 1499 2628 165 17 0 chr4 119846600 119847012 -35783108 - MTD LTR MaLR 0 419 1 5 1499 260 258 31 73 chr4 119847012 119847098 -35783022 + MER34A LTR ERV1 84 167 -404 5 1499 573 205 59 8 chr4 119847105 119847223 -35782897 + B1_Mur1 SINE Alu 12 135 -14 5 1499 389 284 117 41 chr4 119847238 119847528 -35782592 + MER34A LTR ERV1 260 571 0 5 1499 723 253 181 9 chr4 119847593 119847820 -35782300 - Lx9 LINE L1 -903 6741 6476 5 1499 1102 305 77 32 chr4 119847833 119848328 -35781792 + Lx9 LINE L1 6925 7441 -203 5 1499 252 0 0 0 chr4 119848332 119848360 -35781760 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1499 468 0 0 0 chr4 119848360 119848411 -35781709 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1499 305 286 49 39 chr4 119848663 119848765 -35781355 - L1MB8 LINE L1 -214 5970 5868 5 1499 651 288 94 120 chr4 119848766 119848818 -35781302 - MTE2b LTR MaLR 0 379 328 5 1499 666 0 0 0 chr4 119848818 119848892 -35781228 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 5 1499 651 288 94 120 chr4 119848892 119849222 -35780898 - MTE2b LTR MaLR -52 327 9 5 1499 318 285 77 0 chr4 119849226 119849356 -35780764 - L1MB8 LINE L1 -310 5868 5729 5 1499 331 341 24 0 chr4 119849415 119849538 -35780582 - MIR SINE MIR -127 135 10 5 1499 322 248 14 138 chr4 119849647 119849792 -35780328 - B1F SINE Alu -2 147 21 5 1499 1024 157 41 20 chr4 119850623 119850818 -35779302 + URR1A DNA MER1_type 27 225 -1 5 1499 1471 95 0 5 chr4 119851498 119851689 -35778431 + B2_Mm2 SINE B2 1 190 -5 5 1499 396 0 0 0 chr4 119851730 119851774 -35778346 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 5 1499 456 222 26 53 chr4 119854032 119854146 -35775974 + RSINE1 SINE B4 3 113 -52 5 1499 374 0 22 0 chr4 119854189 119854235 -35775885 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 1499 404 289 48 48 chr4 119854278 119854494 -35775626 - MLT1A0 LTR MaLR -11 379 164 5 1499 699 273 38 11 chr4 119854507 119854692 -35775428 - B3A SINE B2 0 198 9 5 1499 606 235 244 6 chr4 119854707 119854887 -35775233 - ID_B1 SINE B4 0 224 2 5 1499 456 19 0 0 chr4 119854902 119854955 -35775165 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1499 186 43 0 0 chr4 119854961 119854984 -35775136 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1499 400 231 13 0 chr4 119855031 119855109 -35775011 - PB1D7 SINE Alu -34 86 8 5 1499 528 229 0 9 chr4 119855436 119855546 -35774574 - PB1D10 SINE Alu -7 110 2 5 1499 236 148 56 0 chr4 119856825 119856879 -35773241 + GA-rich Low_complexity Low_complexity 2 58 0 5 1499 193 153 13 53 chr4 119856938 119857014 -35773106 + GA-rich Low_complexity Low_complexity 2 74 0 5 1499 228 267 17 0 chr4 119857071 119857131 -35772989 - MLT1A0 LTR MaLR -256 152 92 5 1499 259 273 182 0 chr4 119858080 119858168 -35771952 + B1F1 SINE Alu 9 112 -37 5 1499 297 0 0 0 chr4 119858179 119858212 -35771908 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1499 473 227 219 0 chr4 119858348 119858467 -35771653 - RSINE1 SINE B4 -19 146 2 5 1499 257 232 0 0 chr4 119858467 119858522 -35771598 - PB1 SINE Alu -4 123 63 5 1499 468 246 62 48 chr4 119859060 119859205 -35770915 + B1F1 SINE Alu 1 147 -2 5 1499 654 261 0 7 chr4 119859220 119859363 -35770757 + ID_B1 SINE B4 82 223 -1 5 1499 228 240 0 0 chr4 119859382 119859432 -35770688 + GA-rich Low_complexity Low_complexity 2 51 0 5 1499 297 238 12 34 chr4 119859577 119859666 -35770454 + ID4 SINE ID 12 98 -54 5 1499 441 0 0 0 chr4 119860218 119860267 -35769853 + (GGCTG)n Simple_repeat Simple_repeat 5 53 0 5 1499 252 189 117 43 chr4 119862371 119862465 -35767655 - MIR SINE MIR -125 137 37 5 1499 247 312 103 8 chr4 119863044 119863170 -35766950 - L2a LINE L2 -13 3413 3276 5 1499 295 345 9 9 chr4 119863217 119863331 -35766789 - MIR SINE MIR -57 151 38 5 1499 183 360 56 11 chr4 119863388 119863478 -35766642 - MIR SINE MIR -61 201 108 5 1499 248 0 0 30 chr4 119863557 119863590 -35766530 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1499 322 267 49 10 chr4 119864040 119864142 -35765978 - ID_B1 SINE B4 -33 191 86 5 1499 490 163 0 14 chr4 119864147 119864290 -35765830 + CT-rich Low_complexity Low_complexity 2 142 0 5 1499 502 250 45 8 chr4 119864290 119864423 -35765697 - B1F1 SINE Alu 0 149 12 5 1499 252 337 9 37 chr4 119864567 119864675 -35765445 + MIR3 SINE MIR 55 159 -49 5 1499 268 329 80 7 chr4 119864730 119864868 -35765252 - MIRc SINE MIR -81 187 40 5 1499 414 0 0 0 chr4 119865926 119865972 -35764148 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1499 639 243 6 9 chr4 119866306 119866466 -35763654 + B3A SINE B2 1 156 -60 5 1499 192 241 103 0 chr4 119867057 119867144 -35762976 + L2 LINE L2 2829 2924 -495 5 1499 420 20 0 0 chr4 119867967 119868016 -35762104 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1499 21 0 0 0 chr4 119868066 119868087 -35762033 + AT_rich Low_complexity Low_complexity 1 21 0 5 1499 904 123 23 1 chr4 119868090 119868260 -35761860 - B2_Mm2 SINE B2 -9 184 1 5 1499 929 107 14 0 chr4 119869109 119869249 -35760871 + B1_Mus1 SINE Alu 1 142 -6 5 1499 836 108 0 8 chr4 119869254 119869385 -35760735 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 5 1499 877 154 53 37 chr4 119869555 119869744 -35760376 - B2_Mm2 SINE B2 -3 192 1 5 1499 285 324 79 69 chr4 119869976 119870165 -35759955 + B3A SINE B2 2 192 -6 5 1499 225 159 0 0 chr4 119870573 119870617 -35759503 + C-rich Low_complexity Low_complexity 1 44 0 5 1499 197 282 34 120 chr4 119870998 119871115 -35759005 + L2b LINE L2 3208 3314 -61 5 1499 180 125 0 0 chr4 119872358 119872390 -35757730 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1499 1186 61 0 13 chr4 119872878 119873027 -35757093 + B1_Mus1 SINE Alu 2 148 0 5 1499 207 69 0 0 chr4 119873027 119873056 -35757064 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 5 1499 305 306 104 100 chr4 119874151 119874431 -35755689 - ORR1E LTR MaLR -2 357 77 5 1499 1076 272 102 0 chr4 119874442 119874776 -35755344 - MTE2b LTR MaLR -11 368 1 5 1499 219 325 55 8 chr4 119875380 119875507 -35754613 - MIRb SINE MIR -69 199 67 5 1499 525 237 84 0 chr4 119875843 119875974 -35754146 + ID_B1 SINE B4 81 222 -2 5 1499 1113 184 156 11 chr4 119876376 119876542 -35753578 + RMER1C Other Other 1018 1212 -130 5 1499 966 103 0 0 chr4 119876542 119876687 -35753433 + (TTTTC)n Simple_repeat Simple_repeat 3 147 0 5 1499 1113 184 156 11 chr4 119876687 119876795 -35753325 + RMER1C Other Other 1213 1331 -11 5 1499 231 125 0 0 chr4 119876982 119877022 -35753098 + (GGAGAA)n Simple_repeat Simple_repeat 5 44 0 5 1499 423 0 0 0 chr4 119877559 119877606 -35752514 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1499 1126 233 28 87 chr4 119878172 119878421 -35751699 - B4 SINE B4 -14 278 41 5 1499 2532 136 69 3 chr4 119878421 119878812 -35751308 - MTC LTR MaLR 0 421 5 5 1499 1126 233 28 87 chr4 119878812 119878849 -35751271 - B4 SINE B4 -252 40 9 5 1499 585 376 59 18 chr4 119879090 119879547 -35750573 - ERVL-E-int LTR ERVL -2102 3565 3090 5 1499 738 310 29 58 chr4 119879800 119880108 -35750012 + MT2A LTR ERVL 4 302 -231 5 1499 256 239 158 32 chr4 119880103 119880198 -35749922 + MT2A LTR ERVL 427 533 0 5 1499 594 242 85 53 chr4 119881038 119881226 -35748894 + B3A SINE B2 5 198 0 5 1499 715 191 42 21 chr4 119881251 119881395 -35748725 + B1_Mus2 SINE Alu 1 147 0 5 1499 1010 207 14 50 chr4 119881662 119881881 -35748239 - B3 SINE B2 0 216 6 6 1499 603 252 8 0 chr4 119881964 119882091 -35748029 - ID_B1 SINE B4 -15 209 82 6 1499 669 194 90 0 chr4 119882115 119882249 -35747871 - B1_Mur2 SINE Alu -1 148 3 6 1499 311 303 71 54 chr4 119882249 119882407 -35747713 - MT2B LTR ERVL -421 163 1 6 1499 456 19 0 0 chr4 119883413 119883466 -35746654 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1499 678 327 137 15 chr4 119883502 119883837 -35746283 - RMER5 LTR ERV1 -11 523 148 6 1499 1156 226 5 0 chr4 119883838 119884050 -35746070 + B3 SINE B2 4 216 0 6 1499 188 333 124 21 chr4 119884828 119885021 -35745099 - L2c LINE L2 -219 3168 2956 6 1499 1122 90 14 0 chr4 119886412 119886557 -35743563 + B1_Mus1 SINE Alu 2 148 0 6 1499 306 221 71 31 chr4 119886621 119886710 -35743410 - ORR1E LTR MaLR 0 379 286 6 1499 2556 69 22 0 chr4 119886710 119887030 -35743090 + ORR1A2 LTR MaLR 1 327 0 6 1499 250 187 13 26 chr4 119887063 119887140 -35742980 + CT-rich Low_complexity Low_complexity 3 78 0 6 1499 597 202 19 0 chr4 119887169 119887273 -35742847 - PB1D7 SINE Alu -14 106 1 6 1499 271 228 0 42 chr4 119887862 119887958 -35742162 + (TGGG)n Simple_repeat Simple_repeat 3 94 0 6 1499 351 270 125 105 chr4 119888932 119889180 -35740940 - ORR1E LTR MaLR -106 253 1 6 1499 192 260 54 14 chr4 119889709 119889783 -35740337 - MIRc SINE MIR -170 98 22 6 1499 705 139 0 0 chr4 119889919 119890034 -35740086 + B1_Mus2 SINE Alu 23 137 -10 6 1499 432 0 0 0 chr4 119890034 119890082 -35740038 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1499 919 223 91 0 chr4 119890111 119890308 -35739812 - B3 SINE B2 -1 215 1 6 1499 459 78 0 0 chr4 119890314 119890378 -35739742 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1499 415 245 90 9 chr4 119890399 119890510 -35739610 - RSINE1 SINE B4 -43 122 3 6 1499 432 297 63 28 chr4 119890557 119890699 -35739421 - RSINE1 SINE B4 -14 151 5 6 1499 673 216 36 54 chr4 119891461 119891627 -35738493 - RSINE1 SINE B4 0 165 3 6 1499 22 88 0 0 chr4 119892495 119892552 -35737568 + AT_rich Low_complexity Low_complexity 1 57 0 6 1499 910 210 5 38 chr4 119892561 119892774 -35737346 + B3 SINE B2 10 215 -1 6 1499 386 250 11 32 chr4 119892794 119892889 -35737231 + ID_B1 SINE B4 94 186 -38 6 1499 1083 97 3 0 chr4 119892896 119893284 -35736836 + (TG)n Simple_repeat Simple_repeat 1 389 0 6 1499 441 317 27 48 chr4 119893635 119893781 -35736339 - B1F2 SINE Alu 0 149 7 6 1499 224 262 0 62 chr4 119893732 119893797 -35736323 - B4A SINE B4 -152 140 80 6 1499 224 311 14 0 chr4 119894466 119894540 -35735580 - ID4 SINE ID -2 81 7 6 1499 494 271 21 35 chr4 119894545 119894690 -35735430 - B1F SINE Alu -5 144 2 6 1499 227 190 17 0 chr4 119894719 119894777 -35735343 + GA-rich Low_complexity Low_complexity 3 61 0 6 1499 304 157 0 19 chr4 119894780 119894832 -35735288 - RSINE1 SINE B4 -112 53 3 6 1499 725 181 0 0 chr4 119894836 119894952 -35735168 - PB1D10 SINE Alu 0 117 2 6 1499 229 249 43 3 chr4 119895262 119895342 -35734778 - MIR SINE MIR -82 186 106 6 1499 213 196 0 0 chr4 119897012 119897063 -35733057 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1499 213 288 48 9 chr4 119897069 119897174 -35732946 + (CATA)n Simple_repeat Simple_repeat 4 112 0 6 1499 211 259 122 56 chr4 119897339 119897429 -35732691 + MIRb SINE MIR 50 145 -123 6 1499 387 0 0 0 chr4 119897734 119897777 -35732343 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1499 270 242 45 0 chr4 119898477 119898543 -35731577 - MIRm SINE MIR -128 148 80 6 1499 830 119 35 7 chr4 119898816 119898960 -35731160 - URR1B DNA MER1_type 0 225 78 6 1499 180 25 0 182 chr4 119899439 119899538 -35730582 + (CAGC)n Simple_repeat Simple_repeat 4 84 0 6 1499 405 0 0 0 chr4 119900268 119900313 -35729807 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1499 225 0 0 0 chr4 119900898 119900923 -35729197 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 6 1499 207 204 23 0 chr4 119900923 119900967 -35729153 + GA-rich Low_complexity Low_complexity 4 48 0 6 1499 184 290 28 28 chr4 119901459 119901530 -35728590 + MIR SINE MIR 54 124 -84 6 1499 189 0 0 0 chr4 119901530 119901551 -35728569 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 6 1499 242 267 28 47 chr4 119906004 119906110 -35724010 - MIRm SINE MIR -105 171 68 6 1499 306 326 11 0 chr4 119907140 119907229 -35722891 + MIR3 SINE MIR 65 154 -54 6 1499 274 351 81 63 chr4 119907232 119907338 -35722782 + MLT1F LTR MaLR 2 107 -441 6 1499 1232 48 0 0 chr4 119907338 119907485 -35722635 + B1_Mm SINE Alu 1 147 0 6 1499 274 351 81 63 chr4 119907485 119907600 -35722520 + MLT1F LTR MaLR 108 227 -321 6 1499 284 191 107 0 chr4 119907644 119907728 -35722392 + ORR1E LTR MaLR 226 318 -41 6 1499 805 60 0 0 chr4 119907788 119907888 -35722232 + L1Md_F2 LINE L1 5487 5586 -297 6 1499 8580 33 0 6 chr4 119907889 119908890 -35721230 + L1Md_F2 LINE L1 5588 6582 0 6 1499 185 254 73 0 chr4 119909546 119909601 -35720519 + MIR3 SINE MIR 15 73 -135 6 1499 653 229 53 0 chr4 119910382 119910513 -35719607 - ID_B1 SINE B4 -6 218 81 6 1499 261 321 152 63 chr4 119910722 119911038 -35719082 - MLT1I LTR MaLR -63 348 5 6 1499 199 280 159 0 chr4 119911054 119911161 -35718959 - L2a LINE L2 -182 3244 3121 6 1499 633 241 27 41 chr4 119911351 119911498 -35718622 - RSINE1 SINE B4 -19 146 2 6 1499 614 191 8 50 chr4 119911501 119911541 -35718579 - PB1D10 SINE Alu 0 117 83 6 1499 3600 23 0 0 chr4 119911541 119911937 -35718183 - MTA_Mm LTR MaLR 0 396 1 6 1499 614 191 8 50 chr4 119911937 119912017 -35718103 - PB1D10 SINE Alu -35 82 2 6 1499 258 369 72 20 chr4 119913026 119913178 -35716942 - MIR3 SINE MIR -38 170 11 6 1499 699 263 124 0 chr4 119916210 119916404 -35713716 + ID_B1 SINE B4 3 220 -4 6 1499 23 0 0 0 chr4 119916404 119916427 -35713693 + AT_rich Low_complexity Low_complexity 1 23 0 6 1499 258 280 67 39 chr4 119916452 119916556 -35713564 - L2c LINE L2 -33 3354 3248 6 1499 316 306 39 55 chr4 119917162 119917177 -35712943 + ID_B1 SINE B4 78 121 -103 6 1499 335 276 11 11 chr4 119917177 119917265 -35712855 + PB1D10 SINE Alu 9 96 -21 6 1499 316 306 39 55 chr4 119917265 119917290 -35712830 + ID_B1 SINE B4 122 203 -21 6 1499 634 265 21 52 chr4 119917291 119917482 -35712638 + ID_B1 SINE B4 7 191 -33 6 1499 243 0 0 0 chr4 119917483 119917510 -35712610 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1499 373 287 11 0 chr4 119917836 119917930 -35712190 + PB1D10 SINE Alu 23 117 0 6 1499 426 20 0 0 chr4 119917933 119917984 -35712136 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1499 1687 153 132 0 chr4 119918106 119918394 -35711726 - ORR1A3 LTR MaLR 0 326 1 6 1499 216 97 0 0 chr4 119918425 119918456 -35711664 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1499 420 243 84 0 chr4 119919038 119919145 -35710975 - PB1D9 SINE Alu 0 120 5 6 1499 185 268 40 66 chr4 119919177 119919253 -35710867 + MIRc SINE MIR 77 150 -118 6 1499 1033 133 23 6 chr4 119919257 119919431 -35710689 + B2_Mm2 SINE B2 1 177 -18 6 1499 382 330 18 0 chr4 119919444 119919556 -35710564 + PB1D10 SINE Alu 3 116 -1 6 1499 1396 251 94 23 chr4 119919967 119920404 -35709716 - MLT1H LTR MaLR 0 549 82 6 1499 509 226 63 16 chr4 119920428 119920554 -35709566 + B1_Mur4 SINE Alu 5 136 -14 6 1499 284 278 14 14 chr4 119920736 119920809 -35709311 - MIRb SINE MIR -139 129 57 6 1499 606 290 137 0 chr4 119920957 119921205 -35708915 + B4A SINE B4 1 282 -10 6 1499 1507 213 21 0 chr4 119922663 119922949 -35707171 + B4A SINE B4 1 292 0 6 1499 385 19 0 36 chr4 119922964 119923020 -35707100 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1499 241 268 122 3 chr4 119923444 119923523 -35706597 + MIRb SINE MIR 117 199 -69 6 1499 231 261 0 32 chr4 119923523 119923539 -35706581 + ORR1B1-int LTR MaLR 636 647 -862 6 1499 842 54 0 0 chr4 119923539 119923651 -35706469 + B1_Mm SINE Alu 1 112 -35 6 1499 252 261 88 33 chr4 119923961 119924052 -35706068 + MIR SINE MIR 109 204 -58 6 1499 301 243 68 51 chr4 119924130 119924247 -35705873 - L2b LINE L2 -53 3322 3204 6 1499 766 228 0 19 chr4 119924410 119924571 -35705549 + RSINE1 SINE B4 3 160 -5 6 1499 324 0 0 0 chr4 119925144 119925180 -35704940 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1499 267 79 0 0 chr4 119925917 119925955 -35704165 + (CCCCCG)n Simple_repeat Simple_repeat 5 42 0 6 1499 573 64 0 0 chr4 119926257 119926335 -35703785 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1499 459 0 0 0 chr4 119927456 119927507 -35702613 + (CCA)n Simple_repeat Simple_repeat 1 51 0 6 1499 420 104 0 0 chr4 119927951 119928018 -35702102 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1499 665 24 0 12 chr4 119929024 119929108 -35701012 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 1499 706 217 147 129 chr4 119929430 119929716 -35700404 - B4A SINE B4 0 292 2 6 1499 855 178 7 14 chr4 119929729 119929877 -35700243 - B1_Mus1 SINE Alu -1 147 1 6 1500 267 214 0 35 chr4 119931013 119931071 -35699049 + MLT1I LTR MaLR 354 409 -2 6 1500 329 287 58 42 chr4 119932150 119932270 -35697850 - MIRm SINE MIR -104 172 51 6 1500 314 345 62 7 chr4 119933432 119933578 -35696542 + MIR SINE MIR 39 192 -70 6 1500 215 304 89 60 chr4 119934059 119934216 -35695904 - MIRm SINE MIR -49 159 4 6 1500 212 250 28 42 chr4 119935228 119935299 -35694821 + L2b LINE L2 3291 3360 -15 6 1500 224 30 0 29 chr4 119935300 119935334 -35694786 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 7 1500 432 0 0 0 chr4 119935461 119935509 -35694611 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1500 403 283 112 12 chr4 119935619 119935780 -35694340 + MamRep1879 DNA hAT? 10 186 -30 7 1500 274 290 10 20 chr4 119935970 119936072 -35694048 + GA-rich Low_complexity Low_complexity 3 103 0 7 1500 275 122 0 20 chr4 119936077 119936127 -35693993 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 7 1500 504 0 0 0 chr4 119936538 119936594 -35693526 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1500 342 0 0 0 chr4 119936798 119936836 -35693284 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1500 188 354 40 10 chr4 119937174 119937274 -35692846 + MIRb SINE MIR 27 129 -139 7 1500 246 125 0 0 chr4 119937315 119937363 -35692757 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1500 668 257 34 28 chr4 119938489 119938665 -35691455 + MTEb LTR MaLR 3 179 -200 7 1500 416 296 71 8 chr4 119938672 119938798 -35691322 + RSINE1 SINE B4 13 146 -19 7 1500 417 86 0 0 chr4 119938817 119938875 -35691245 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1500 592 197 33 2 chr4 119938876 119939013 -35691107 + MTEb LTR MaLR 158 322 -57 7 1500 371 73 0 18 chr4 119939014 119939070 -35691050 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 7 1500 303 102 32 63 chr4 119939072 119939135 -35690985 + MTEb LTR MaLR 315 375 -4 7 1500 279 79 0 0 chr4 119939236 119939274 -35690846 + (TCC)n Simple_repeat Simple_repeat 2 39 0 7 1500 27 49 0 0 chr4 119940808 119940849 -35689271 + GC_rich Low_complexity Low_complexity 1 41 0 7 1500 39 98 0 0 chr4 119940933 119941056 -35689064 + GC_rich Low_complexity Low_complexity 1 123 0 7 1500 207 304 75 11 chr4 119943908 119944001 -35686119 - MIRb SINE MIR -123 145 47 7 1500 197 330 73 0 chr4 119944309 119944418 -35685702 - MIR3 SINE MIR -90 118 2 7 1500 271 266 0 0 chr4 119945889 119945953 -35684167 + MER46C DNA MER2_type 264 327 -11 7 1500 559 272 72 58 chr4 119947319 119947526 -35682594 - MER63A DNA AcHobo 0 210 1 7 1500 287 256 58 72 chr4 119947642 119947781 -35682339 - MIRc SINE MIR -125 143 7 7 1500 876 117 20 7 chr4 119949554 119949700 -35680420 + URR1A DNA MER1_type 79 226 0 7 1500 461 282 52 17 chr4 119949700 119949724 -35680396 - CYRA11_Mm Unknown Y-chromosome -295 319 144 7 1500 199 309 92 10 chr4 119950511 119950609 -35679511 - MIR3 SINE MIR -54 154 49 7 1500 864 308 34 8 chr4 119950688 119950950 -35679170 + B4A SINE B4 1 269 -23 7 1500 405 70 0 0 chr4 119950950 119951007 -35679113 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1500 468 62 0 0 chr4 119951155 119951219 -35678901 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1500 182 319 74 25 chr4 119951326 119951448 -35678672 - MIRb SINE MIR -57 211 84 7 1500 229 336 63 9 chr4 119953485 119953596 -35676524 + MIR SINE MIR 113 229 -33 7 1500 229 294 65 47 chr4 119954790 119954897 -35675223 + MIR3 SINE MIR 5 113 -95 7 1500 278 344 49 0 chr4 119957266 119957456 -35672664 + MIR3 SINE MIR 6 204 -4 7 1500 248 306 85 43 chr4 119957563 119957727 -35672393 + MIRb SINE MIR 90 260 -8 7 1500 189 147 0 0 chr4 119960137 119960171 -35669949 + (CCG)n Simple_repeat Simple_repeat 3 36 0 7 1500 25 31 0 0 chr4 119960172 119960204 -35669916 + GC_rich Low_complexity Low_complexity 1 32 0 7 1500 21 0 0 0 chr4 119960257 119960278 -35669842 + GC_rich Low_complexity Low_complexity 1 21 0 7 1500 407 276 156 24 chr4 119960993 119961160 -35668960 - MER5A DNA MER1_type 0 189 1 7 1500 256 322 11 11 chr4 119961649 119961737 -35668383 - MIR3 SINE MIR -36 172 85 7 1500 266 333 10 0 chr4 119964395 119964491 -35665629 - MIRb SINE MIR -65 203 107 7 1500 591 15 0 0 chr4 119964532 119964600 -35665520 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1500 426 39 0 0 chr4 119964600 119964651 -35665469 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1500 493 273 188 70 chr4 119964669 119964925 -35665195 - B4 SINE B4 -4 288 3 7 1500 188 259 18 18 chr4 119964986 119965041 -35665079 + MIRc SINE MIR 98 152 -116 7 1500 763 281 25 0 chr4 119965084 119965287 -35664833 + ID_B1 SINE B4 6 213 -11 7 1500 351 0 0 0 chr4 119965287 119965326 -35664794 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1500 1276 28 0 0 chr4 119965340 119965484 -35664636 + B1_Mus1 SINE Alu 5 148 0 7 1500 216 167 0 0 chr4 119965485 119965533 -35664587 + GA-rich Low_complexity Low_complexity 2 49 0 7 1500 366 293 189 39 chr4 119965626 119966014 -35664106 - MLT1C LTR MaLR -53 414 3 7 1500 441 0 0 0 chr4 119966303 119966352 -35663768 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1500 239 309 78 58 chr4 119968548 119968754 -35661366 - ORR1D1 LTR MaLR 0 374 165 7 1500 570 274 145 87 chr4 119968792 119969068 -35661052 + B4 SINE B4 1 292 0 7 1500 1230 41 7 0 chr4 119969127 119969273 -35660847 + B1_Mm SINE Alu 1 147 0 7 1500 195 191 24 0 chr4 119969516 119969558 -35660562 + L4 LINE RTE 1786 1828 -201 7 1500 262 111 86 0 chr4 119970178 119970259 -35659861 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 7 1500 406 351 28 50 chr4 119970336 119970362 -35659758 - MLT2B1 LTR ERVL -47 520 500 7 1500 417 86 0 0 chr4 119970362 119970420 -35659700 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 7 1500 406 351 28 50 chr4 119970420 119970573 -35659547 - MLT2B1 LTR ERVL -68 499 345 7 1500 416 273 117 0 chr4 119970622 119970776 -35659344 - MLT2B1 LTR ERVL -348 172 1 7 1500 253 395 34 0 chr4 119971047 119971166 -35658954 + MIRb SINE MIR 9 131 -137 7 1500 1432 234 68 33 chr4 119971315 119971712 -35658408 + MTD LTR MaLR 9 419 0 7 1500 198 356 17 34 chr4 119971764 119971883 -35658237 + MIR SINE MIR 71 187 -75 7 1500 330 26 0 0 chr4 119972286 119972325 -35657795 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1500 1148 232 50 32 chr4 119972329 119972609 -35657511 - B4A SINE B4 -6 286 2 7 1500 212 295 31 83 chr4 119972663 119972759 -35657361 + MIR SINE MIR 34 124 -84 7 1500 180 0 0 0 chr4 119972798 119972818 -35657302 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1500 264 314 48 0 chr4 119973777 119973882 -35656238 + MIR SINE MIR 110 219 -43 7 1500 3383 85 2 98 chr4 119974089 119974612 -35655508 + MT2C_Mm LTR ERVL 3 475 0 7 1500 188 143 102 0 chr4 119975387 119975436 -35654684 - MIR SINE MIR -60 148 95 7 1500 261 331 7 93 chr4 119975446 119975586 -35654534 + ORR1D2 LTR MaLR 1 128 -231 7 1500 291 222 48 24 chr4 119975606 119975689 -35654431 + ORR1D2 LTR MaLR 253 337 -33 7 1500 1038 272 25 18 chr4 119976055 119976339 -35653781 - B4A SINE B4 -6 286 1 7 1500 31 26 0 0 chr4 119976369 119976407 -35653713 + AT_rich Low_complexity Low_complexity 1 38 0 7 1500 452 292 52 12 chr4 119976415 119976588 -35653532 + MER33 DNA MER1_type 142 321 -3 7 1500 207 225 0 0 chr4 119976730 119976770 -35653350 + L3 LINE CR1 4078 4117 -372 7 1500 288 260 135 0 chr4 119977132 119977228 -35652892 - MIRb SINE MIR -126 142 34 7 1500 200 281 18 0 chr4 119977511 119977568 -35652552 + (CCA)n Simple_repeat Simple_repeat 3 60 0 7 1500 300 387 0 27 chr4 119977569 119977755 -35652365 + HAL1-2a_MD LINE L1 2345 2525 -499 7 1500 204 200 0 0 chr4 119977893 119977948 -35652172 + (CCA)n Simple_repeat Simple_repeat 2 56 0 7 1500 182 91 30 0 chr4 119978378 119978411 -35651709 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 7 1500 203 277 31 0 chr4 119978502 119978567 -35651553 + MIRb SINE MIR 1 67 -201 7 1500 252 266 16 0 chr4 119978753 119978817 -35651303 + MLT2F LTR ERVL 20 84 -579 7 1500 233 191 0 0 chr4 119978816 119978858 -35651262 + MLT2F LTR ERVL 520 561 -2 7 1500 239 231 76 15 chr4 119979089 119979155 -35650965 - MIR SINE MIR -176 86 17 7 1500 1359 325 99 46 chr4 119979350 119980187 -35649933 + L1MEc LINE L1 131 1011 -5389 7 1500 255 31 0 0 chr4 119980187 119980219 -35649901 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1500 1359 325 99 46 chr4 119980219 119980350 -35649770 + L1MEc LINE L1 1012 1150 -5250 7 1500 565 234 20 34 chr4 119980364 119980510 -35649610 + RSINE1 SINE B4 11 154 -11 7 1500 216 182 0 0 chr4 119980608 119980652 -35649468 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 7 1500 451 131 87 139 chr4 119980652 119980767 -35649353 + B1_Mur3 SINE Alu 40 148 -1 7 1500 180 111 0 0 chr4 119980768 119980795 -35649325 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 7 1500 542 270 84 123 chr4 119980806 119980965 -35649155 + L1MEc LINE L1 1142 1287 -5113 7 1500 1157 186 28 14 chr4 119980965 119981178 -35648942 + B3 SINE B2 1 216 0 7 1500 542 270 84 123 chr4 119981178 119981496 -35648624 + L1MEc LINE L1 1288 1600 -4800 7 1500 338 292 82 20 chr4 119981522 119981718 -35648402 + L1MEc LINE L1 1702 1909 -4491 7 1500 643 309 53 32 chr4 119981725 119982009 -35648111 + B4A SINE B4 3 292 0 7 1500 639 26 0 0 chr4 119982194 119982271 -35647849 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1500 357 24 0 0 chr4 119982271 119982312 -35647808 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1500 995 248 105 4 chr4 119982314 119982561 -35647559 - B4A SINE B4 -20 272 1 7 1500 360 0 0 0 chr4 119982587 119982627 -35647493 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 7 1500 395 282 83 49 chr4 119982651 119982749 -35647371 + L1MEc LINE L1 2168 2279 -4121 7 1500 1327 120 16 0 chr4 119982749 119982940 -35647180 + B2_Mm2 SINE B2 2 195 0 7 1500 878 308 55 28 chr4 119982940 119983437 -35646683 + L1MEc LINE L1 2280 2777 -3542 7 1500 278 276 119 24 chr4 119983451 119983577 -35646543 - RMER15 LTR ERVL -16 559 422 7 1500 321 298 105 32 chr4 119983763 119984106 -35646014 + L1MEc LINE L1 2749 3116 -3203 7 1500 1012 240 31 16 chr4 119984106 119984364 -35645756 + B4A SINE B4 9 270 -22 7 1500 283 341 0 0 chr4 119984764 119984855 -35645265 + MLT1A0 LTR MaLR 193 283 -82 7 1500 342 0 0 0 chr4 119985029 119985067 -35645053 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1500 520 268 29 0 chr4 119985534 119985672 -35644448 + B1F2 SINE Alu 2 143 -6 7 1500 237 260 158 10 chr4 119985864 119985965 -35644155 - MIR SINE MIR -61 201 86 7 1500 319 283 53 38 chr4 119986000 119986132 -35643988 - MLT1K LTR MaLR -253 342 209 7 1500 582 292 89 40 chr4 119986489 119986714 -35643406 + MLT1B LTR MaLR 20 255 -135 7 1500 262 239 30 0 chr4 119987140 119987207 -35642913 + MIRb SINE MIR 187 255 -13 7 1500 701 204 23 34 chr4 119988498 119988697 -35641423 - B3 SINE B2 -1 194 1 7 1500 520 326 97 31 chr4 119989038 119989326 -35640794 - Charlie18a DNA MER1_type -5 337 31 8 1500 208 274 81 0 chr4 119989484 119989546 -35640574 - MIRb SINE MIR -37 231 165 8 1500 815 57 0 5 chr4 119989722 119989842 -35640278 - L1_Mus1 LINE L1 -2 6580 6460 8 1500 510 301 65 50 chr4 119990026 119990222 -35639898 - L1M5 LINE L1 -1639 4507 4299 8 1500 823 214 26 83 chr4 119990222 119990451 -35639669 - B3 SINE B2 0 216 1 8 1500 510 302 60 83 chr4 119990451 119990750 -35639370 - L1M5 LINE L1 -1848 4298 4060 8 1500 1158 122 0 0 chr4 119990750 119990930 -35639190 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1500 488 305 50 153 chr4 119990930 119990943 -35639177 - L1M5 LINE L1 -2087 4059 4059 8 1500 1074 133 0 0 chr4 119990943 119991116 -35639004 + (GGA)n Simple_repeat Simple_repeat 3 175 0 8 1500 723 213 23 128 chr4 119991116 119991410 -35638710 - L1M5 LINE L1 -2087 4059 3787 8 1500 1696 26 0 0 chr4 119991551 119991743 -35638377 - B2_Mm1a SINE B2 0 193 2 8 1500 224 268 18 0 chr4 119991797 119991853 -35638267 + GA-rich Low_complexity Low_complexity 3 59 0 8 1500 333 19 0 53 chr4 119992412 119992469 -35637651 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1500 357 169 82 6 chr4 119992785 119992862 -35637258 + PB1D10 SINE Alu 43 118 -31 8 1500 315 333 69 116 chr4 119992902 119993075 -35637045 + RSINE1 SINE B4 1 165 0 8 1500 343 171 45 0 chr4 119993076 119993164 -35636956 + (CATA)n Simple_repeat Simple_repeat 4 95 0 8 1500 422 233 151 25 chr4 119993225 119993344 -35636776 + ID_B1 SINE B4 84 217 -7 8 1500 276 304 51 15 chr4 119993386 119993523 -35636597 + L1M5 LINE L1 3513 3657 -2489 8 1500 323 315 22 65 chr4 119993920 119994059 -35636061 + L1M5 LINE L1 3663 3795 -2351 8 1500 304 325 71 79 chr4 119994061 119994328 -35635792 - ORR1E LTR MaLR 0 359 95 8 1500 1936 155 79 3 chr4 119994332 119994701 -35635419 + MTD LTR MaLR 1 397 -22 8 1500 284 310 68 11 chr4 119994731 119994860 -35635260 - MIRc SINE MIR -109 167 24 8 1500 752 221 36 71 chr4 119997059 119997283 -35632837 - B3 SINE B2 0 216 1 8 1500 319 360 43 0 chr4 119997519 119997683 -35632437 + MIRb SINE MIR 61 231 -37 8 1500 429 295 209 36 chr4 120000056 120000443 -35629677 - L2 LINE L2 -955 2464 2011 1 1500 375 23 0 0 chr4 120001009 120001053 -35629067 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1500 1040 250 35 28 chr4 120001073 120001357 -35628763 - B4A SINE B4 -2 290 5 3 1500 3556 20 2 0 chr4 120002024 120002419 -35627701 + MTA_Mm LTR MaLR 1 396 0 4 1500 9724 20 0 0 chr4 120002419 120003517 -35626603 + MTA_Mm-int LTR MaLR 1 1098 0 4 1500 3556 20 2 0 chr4 120003517 120003912 -35626208 + MTA_Mm LTR MaLR 1 396 0 4 1500 240 373 67 11 chr4 120004314 120004493 -35625627 - L3 LINE CR1 -8 4481 4293 5 1500 216 0 0 0 chr4 120005063 120005087 -35625033 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1500 199 243 0 146 chr4 120006533 120006615 -35623505 + L4 LINE RTE 1379 1448 -581 7 1500 548 272 133 0 chr4 120006777 120006957 -35623163 + MLT1H2 LTR MaLR 29 232 -257 8 1500 331 279 73 112 chr4 120007156 120007388 -35622732 + B4 SINE B4 84 291 -1 9 1500 452 333 144 71 chr4 120007466 120007944 -35622176 + HAL1 LINE L1 941 1453 -1054 1 1500 246 289 87 31 chr4 120007962 120008123 -35621997 + HAL1 LINE L1 1585 1754 -753 1 1500 553 308 45 130 chr4 120008270 120008909 -35621211 + L1MEe LINE L1 2029 2640 -3574 1 1500 1195 216 5 0 chr4 120009097 120009310 -35620810 + B3 SINE B2 1 214 -2 1 1500 3505 191 34 26 chr4 120009474 120010177 -35619943 - RMER1A Other Other -196 834 20 1 1500 238 260 0 0 chr4 120010202 120010279 -35619841 + T-rich Low_complexity Low_complexity 1 77 0 1 1500 347 234 96 0 chr4 120010324 120010418 -35619702 - PB1D10 SINE Alu -5 112 10 1 1500 1374 101 11 0 chr4 120010427 120010615 -35619505 - B2_Mm2 SINE B2 -5 190 1 1 1500 882 269 38 28 chr4 120010671 120010958 -35619162 - B4A SINE B4 0 292 3 1 1500 384 286 87 20 chr4 120010961 120011111 -35619009 + MLT1H2 LTR MaLR 247 406 -2 8 1500 468 279 186 47 chr4 120011193 120011602 -35618518 + L1M5 LINE L1 2740 3205 -2941 1 1500 305 262 12 24 chr4 120012485 120012567 -35617553 + ID4_ SINE ID 3 83 0 1 1500 560 272 172 55 chr4 120012627 120012970 -35617150 + MLT2C1 LTR ERVL 15 397 0 2 1500 364 327 30 0 chr4 120013099 120013200 -35616920 - B1F SINE Alu -43 106 3 2 1500 246 275 36 36 chr4 120013225 120013308 -35616812 + MLT1D LTR MaLR 3 85 -420 2 1500 628 322 110 31 chr4 120013278 120013634 -35616486 + Arthur1 DNA Tip100 52 435 -3512 2 1500 591 274 48 28 chr4 120013636 120013888 -35616232 + Arthur1 DNA Tip100 3362 3618 -329 2 1500 230 286 0 0 chr4 120013950 120013999 -35616121 + Lx8 LINE L1 6949 6997 -476 2 1500 232 125 0 0 chr4 120014046 120014078 -35616042 - PB1D7 SINE Alu -85 35 4 2 1500 214 227 23 0 chr4 120014078 120014090 -35616030 - B4 SINE B4 -172 120 76 2 1500 278 297 29 19 chr4 120014127 120014230 -35615890 + Arthur1 DNA Tip100 3835 3938 -9 2 1500 243 325 74 16 chr4 120014338 120014460 -35615660 + L2 LINE L2 1995 2123 -1296 2 1500 425 330 66 62 chr4 120014481 120014769 -35615351 - ORR1E LTR MaLR 0 359 71 2 1500 549 305 184 29 chr4 120014860 120015279 -35614841 + L2 LINE L2 2234 2717 -702 2 1500 319 365 67 31 chr4 120015371 120015566 -35614554 - LTR33A_ LTR ERVL -83 448 247 2 1500 215 261 28 28 chr4 120015803 120015874 -35614246 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 3 1500 403 324 81 27 chr4 120015882 120016104 -35614016 - L1ME3A LINE L1 -9 6164 5931 3 1500 771 36 0 76 chr4 120016187 120016306 -35613814 - BC1_Mm scRNA scRNA -42 110 1 3 1500 8191 72 11 4 chr4 120016316 120017557 -35612563 - L1_Mus3 LINE L1 -7 6631 5387 3 1500 505 309 90 29 chr4 120017568 120017878 -35612242 - L1ME3A LINE L1 -402 5771 5443 3 1500 312 254 15 0 chr4 120017889 120017973 -35612147 - ID4 SINE ID -60 92 8 3 1500 235 280 78 20 chr4 120017978 120018080 -35612040 - L1ME3A LINE L1 -739 5434 5327 3 1500 440 204 90 27 chr4 120018807 120018918 -35611202 - MLT1A1 LTR MaLR 0 408 291 3 1500 1089 194 9 9 chr4 120019098 120019311 -35610809 - B3 SINE B2 0 216 4 3 1500 234 208 42 0 chr4 120019325 120019373 -35610747 - MLT1A1 LTR MaLR -307 101 52 3 1500 268 330 9 28 chr4 120019429 120019535 -35610585 - L2 LINE L2 -2569 850 747 3 1500 228 275 14 0 chr4 120019669 120019738 -35610382 + L1M5 LINE L1 4903 4972 -1174 3 1500 808 182 48 106 chr4 120019943 120020170 -35609950 + B3 SINE B2 3 216 0 3 1500 648 192 256 6 chr4 120020188 120020356 -35609764 - B3 SINE B2 -6 210 1 4 1500 186 43 0 0 chr4 120020429 120020452 -35609668 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1500 1120 67 54 0 chr4 120020453 120020602 -35609518 - B2_Mm2 SINE B2 -37 158 2 4 1500 281 174 64 2 chr4 120020602 120020675 -35609445 - MIR SINE MIR -57 151 76 4 1500 680 152 41 14 chr4 120020788 120020935 -35609185 - L1MA10 LINE L1 0 6334 6184 4 1500 864 175 7 0 chr4 120021037 120021174 -35608946 + B1_Mur2 SINE Alu 12 149 0 4 1500 297 0 0 0 chr4 120021328 120021361 -35608759 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1500 781 204 7 7 chr4 120021361 120021499 -35608621 - B1_Mur1 SINE Alu -10 139 2 4 1500 572 83 10 0 chr4 120021507 120021603 -35608517 + (TTTTG)n Simple_repeat Simple_repeat 1 97 0 4 1500 1349 239 58 94 chr4 120021826 120022219 -35607901 - MTE2a LTR MaLR 0 379 1 4 1500 806 196 14 0 chr4 120022573 120022721 -35607399 + B1_Mur4 SINE Alu 1 150 0 5 1500 536 240 109 23 chr4 120023019 120023194 -35606926 - L1ME1 LINE L1 -43 6136 5947 5 1500 2275 127 18 58 chr4 120023281 120023675 -35606445 - ORR1C1 LTR MaLR 0 378 1 5 1500 738 329 39 31 chr4 120023692 120023949 -35606171 + MTEb LTR MaLR 16 274 -105 5 1500 421 287 193 5 chr4 120024085 120024303 -35605817 - L1ME1 LINE L1 -426 5738 5480 5 1500 681 333 0 0 chr4 120024360 120024522 -35605598 - RSINE1 SINE B4 0 165 4 5 1500 349 206 172 19 chr4 120024529 120024685 -35605435 - L1ME1 LINE L1 -693 5486 5302 5 1500 392 97 16 0 chr4 120024859 120024921 -35605199 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1500 381 43 0 0 chr4 120024921 120024968 -35605152 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1500 1224 282 34 53 chr4 120025115 120025532 -35604588 - Lx8 LINE L1 -98 7375 6944 5 1500 1017 102 7 0 chr4 120025951 120026098 -35604022 + URR1A DNA MER1_type 79 226 0 5 1500 268 254 28 0 chr4 120026923 120026994 -35603126 + ID4 SINE ID 1 73 -10 5 1500 387 0 0 0 chr4 120028203 120028246 -35601874 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1500 698 249 25 45 chr4 120029654 120029856 -35600264 - B3A SINE B2 0 198 1 6 1500 756 268 190 23 chr4 120030095 120030427 -35599693 + MTD LTR MaLR 14 419 0 6 1500 333 0 0 0 chr4 120030524 120030561 -35599559 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1500 191 309 14 14 chr4 120031139 120031208 -35598912 - MIRb SINE MIR -24 244 176 6 1500 774 216 40 7 chr4 120031226 120031375 -35598745 - RSINE1 SINE B4 -9 156 3 6 1500 262 324 80 18 chr4 120031375 120031488 -35598632 - MIR SINE MIR -109 153 34 6 1500 963 317 72 14 chr4 120031512 120031999 -35598121 + L1ME4a LINE L1 5605 6119 -5 6 1500 428 193 0 8 chr4 120032227 120032300 -35597820 + polypurine Low_complexity Low_complexity 4 76 0 6 1500 1071 117 0 0 chr4 120032300 120032480 -35597640 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 6 1500 428 193 0 8 chr4 120032480 120032526 -35597594 + polypurine Low_complexity Low_complexity 77 122 0 6 1500 835 136 0 28 chr4 120032529 120032710 -35597410 + GA-rich Low_complexity Low_complexity 2 177 0 7 1500 429 318 62 17 chr4 120033609 120033785 -35596335 - MIRb SINE MIR -66 202 19 7 1500 734 294 56 81 chr4 120033888 120034079 -35596041 + B4A SINE B4 15 215 -77 7 1500 1054 107 0 0 chr4 120034079 120034219 -35595901 + B1_Mus1 SINE Alu 3 142 -6 7 1500 191 36 36 0 chr4 120034222 120034250 -35595870 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1500 734 294 56 81 chr4 120034250 120034323 -35595797 + B4A SINE B4 216 277 -15 7 1500 291 114 0 0 chr4 120034323 120034367 -35595753 + (CATA)n Simple_repeat Simple_repeat 4 47 0 7 1500 734 294 56 81 chr4 120034367 120034382 -35595738 + B4A SINE B4 278 292 0 7 1500 772 274 55 20 chr4 120034461 120034662 -35595458 + ID_B1 SINE B4 4 211 -13 7 1500 314 228 10 0 chr4 120034679 120034780 -35595340 + GA-rich Low_complexity Low_complexity 2 103 0 7 1500 1083 316 66 19 chr4 120034990 120035519 -35594601 + L2c LINE L2 2275 2828 -591 7 1500 182 308 121 32 chr4 120035581 120035705 -35594415 + L2c LINE L2 2952 3086 -289 7 1500 207 292 135 27 chr4 120035760 120035908 -35594212 + L2c LINE L2 3224 3387 0 7 1500 450 236 18 0 chr4 120035929 120036094 -35594026 + (TGGA)n Simple_repeat Simple_repeat 4 171 0 7 1500 597 28 0 0 chr4 120036143 120036214 -35593906 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 8 1500 266 284 40 0 chr4 120036966 120037040 -35593080 + ID4 SINE ID 4 80 -3 8 1500 234 62 0 0 chr4 120037895 120037927 -35592193 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1500 245 105 53 0 chr4 120038365 120038403 -35591717 - CR1_Mam LINE CR1 -686 1518 1479 8 1500 1023 226 58 0 chr4 120039274 120039482 -35590638 - ID_B1 SINE B4 -3 221 2 8 1500 946 169 138 0 chr4 120039614 120039809 -35590311 + URR1A DNA MER1_type 5 226 0 8 1500 211 311 95 19 chr4 120039899 120040004 -35590116 + MIRb SINE MIR 30 142 -126 8 1500 190 314 35 113 chr4 120040741 120040856 -35589264 - MIR3 SINE MIR -15 193 88 8 1500 201 74 0 0 chr4 120042049 120042076 -35588044 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 8 1500 672 216 124 22 chr4 120043229 120043414 -35586706 + MER20 DNA MER1_type 14 217 -2 8 1500 188 283 121 32 chr4 120043763 120043887 -35586233 + MIRc SINE MIR 35 169 -99 9 1500 275 327 87 87 chr4 120044482 120044827 -35585293 - MLT1A1 LTR MaLR -20 345 1 9 1500 337 280 83 9 chr4 120044844 120044952 -35585168 - ID_B1 SINE B4 -25 199 84 9 1500 294 29 0 0 chr4 120044966 120045001 -35585119 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1500 222 280 28 27 chr4 120045364 120045452 -35584668 - L2b LINE L2 -30 3396 3261 9 1500 226 322 91 32 chr4 120046559 120046700 -35583420 - MIR SINE MIR -80 188 38 9 1500 210 307 13 39 chr4 120046770 120046848 -35583272 + ID4 SINE ID 7 82 -1 9 1500 399 306 42 60 chr4 120047226 120047278 -35582842 - L1ME4a LINE L1 -6 6118 6066 9 1500 645 310 75 36 chr4 120047278 120047559 -35582561 - B4A SINE B4 0 292 1 9 1500 399 306 42 60 chr4 120047559 120047673 -35582447 - L1ME4a LINE L1 -59 6065 5955 9 1500 261 139 0 0 chr4 120048755 120048798 -35581322 + (TCC)n Simple_repeat Simple_repeat 3 45 0 9 1500 368 96 26 0 chr4 120048812 120048889 -35581231 - B1_Mus2 SINE Alu 0 149 32 1 1500 1347 68 0 0 chr4 120048942 120049225 -35580895 + (TG)n Simple_repeat Simple_repeat 1 283 0 1 1500 306 0 0 0 chr4 120049225 120049258 -35580862 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1500 551 305 172 0 chr4 120049287 120049549 -35580571 + L1MD2 LINE L1 6040 6346 -13 1 1500 375 213 73 18 chr4 120049727 120049837 -35580283 + MIRc SINE MIR 32 147 -121 1 1500 780 239 12 37 chr4 120051524 120051685 -35578435 + RSINE1 SINE B4 9 165 0 1 1500 211 328 122 50 chr4 120051685 120051698 -35578422 + B3A SINE B2 51 194 -4 1 1500 2210 142 11 35 chr4 120052189 120052555 -35577565 + ORR1B2 LTR MaLR 3 359 -8 1 1500 474 324 68 6 chr4 120052578 120052755 -35577365 + LTR16C LTR ERVL 302 489 0 1 1500 270 289 81 20 chr4 120052978 120053077 -35577043 - MLT1J LTR MaLR -395 117 13 1 1500 249 33 0 0 chr4 120054233 120054263 -35575857 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1500 629 231 17 96 chr4 120054264 120054441 -35575679 - RSINE1 SINE B4 0 165 3 1 1500 206 274 96 12 chr4 120054714 120054814 -35575306 + MIR SINE MIR 43 150 -58 1 1500 916 251 18 28 chr4 120055386 120055603 -35574517 + B4 SINE B4 3 217 -75 1 1500 204 398 19 0 chr4 120056101 120056204 -35573916 + MIR SINE MIR 20 124 -84 1 1500 235 291 35 0 chr4 120056783 120056869 -35573251 + GA-rich Low_complexity Low_complexity 1 89 0 1 1500 324 0 0 0 chr4 120057084 120057120 -35573000 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1500 482 153 78 39 chr4 120057122 120057224 -35572896 - PB1D9 SINE Alu -13 107 2 1 1500 803 320 31 6 chr4 120057401 120057719 -35572401 + MER90a LTR ERV1 76 401 -213 1 1500 267 325 49 93 chr4 120058462 120058645 -35571475 + MER63A DNA AcHobo 36 210 0 1 1500 196 270 137 51 chr4 120058767 120058884 -35571236 - MER5A DNA MER1_type -23 166 40 1 1500 248 305 37 19 chr4 120059234 120059341 -35570779 + MIRc SINE MIR 36 144 -124 1 1500 318 278 109 81 chr4 120059552 120059607 -35570513 - MLT2B1 LTR ERVL -7 560 502 1 1500 279 0 0 0 chr4 120059607 120059638 -35570482 + (CAGA)n Simple_repeat Simple_repeat 3 33 0 1 1500 655 286 107 75 chr4 120059638 120060003 -35570117 - MLT2B1 LTR ERVL -66 501 16 1 1500 1043 36 80 0 chr4 120060050 120060187 -35569933 + B1_Mus1 SINE Alu 1 148 0 1 1500 367 293 58 159 chr4 120060405 120060770 -35569350 - MLT1F2 LTR MaLR -164 396 69 1 1500 450 0 0 0 chr4 120060910 120060960 -35569160 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1501 237 266 16 0 chr4 120062033 120062097 -35568023 + MIRb SINE MIR 53 117 -151 1 1501 879 278 56 38 chr4 120063456 120063744 -35566376 + MTE2a LTR MaLR 57 349 -30 1 1501 1287 20 0 0 chr4 120063753 120063900 -35566220 - B1_Mm SINE Alu 0 147 1 1 1501 251 360 24 8 chr4 120064530 120064656 -35565464 + L2c LINE L2 3029 3156 -231 1 1501 215 180 111 32 chr4 120065725 120065788 -35564332 - L2b LINE L2 -5 3370 3303 1 1501 1219 19 0 19 chr4 120066567 120066727 -35563393 + B2_Mm2 SINE B2 2 158 -37 1 1501 288 0 0 0 chr4 120066728 120066760 -35563360 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1501 243 0 0 0 chr4 120066761 120066788 -35563332 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1501 1642 40 0 0 chr4 120067073 120067273 -35562847 - L1Md_T LINE L1 0 6582 6383 1 1501 458 250 9 18 chr4 120067798 120067912 -35562208 + ID_B1 SINE B4 78 190 -34 1 1501 207 0 0 0 chr4 120068775 120068798 -35561322 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1501 618 236 194 22 chr4 120069251 120069529 -35560591 + MLT1E3 LTR MaLR 243 611 -13 1 1501 442 243 125 0 chr4 120069935 120070071 -35560049 - RCHARR1 DNA MER1_type -6 968 816 1 1501 292 254 30 0 chr4 120070166 120070233 -35559887 + RSINE1 SINE B4 82 150 -15 1 1501 2659 72 34 13 chr4 120070422 120070433 -35559687 - L1_Mus3 LINE L1 -2 6636 6626 1 1501 1242 48 0 0 chr4 120070433 120070580 -35559540 - B1_Mus2 SINE Alu 0 147 1 1 1501 2659 72 34 13 chr4 120070580 120070947 -35559173 - L1_Mus3 LINE L1 -13 6625 6251 1 1501 409 191 16 120 chr4 120071112 120071124 -35558996 - PB1D10 SINE Alu -4 113 3 1 1501 499 204 0 36 chr4 120071124 120071236 -35558884 - ID_B1 SINE B4 -33 191 84 1 1501 388 280 83 40 chr4 120071280 120071555 -35558565 + B4 SINE B4 4 279 -13 1 1501 1030 58 0 0 chr4 120071804 120071942 -35558178 - B1_Mus1 SINE Alu 0 148 11 1 1501 2929 60 0 25 chr4 120071968 120072363 -35557757 - L1_Mm LINE L1 -2152 3731 3347 1 1501 314 311 84 75 chr4 120072527 120072753 -35557367 + MIR SINE MIR 11 238 -24 1 1501 427 232 31 23 chr4 120073186 120073314 -35556806 + MLT1A1 LTR MaLR 1 129 -279 1 1501 526 281 178 50 chr4 120073422 120073681 -35556439 + B4A SINE B4 1 292 0 1 1501 399 198 137 8 chr4 120074080 120074184 -35555936 - PB1D10 SINE Alu -2 115 4 1 1501 562 214 190 25 chr4 120074341 120074499 -35555621 - MTC LTR MaLR -11 410 227 1 1501 233 250 0 77 chr4 120074495 120074560 -35555560 - RLTR18 LTR ERVK -556 60 1 1 1501 5264 117 9 23 chr4 120074699 120075673 -35554447 - Lx LINE L1 -578 6076 5137 1 1501 1051 63 42 0 chr4 120075673 120075816 -35554304 - B1_Mur4 SINE Alu 0 150 2 1 1501 5264 151 17 47 chr4 120075816 120075998 -35554122 - Lx LINE L1 -747 5136 4948 1 1501 3615 158 7 11 chr4 120075998 120076606 -35553514 + Lx LINE L1 6050 6654 0 1 1501 637 220 178 19 chr4 120076853 120077212 -35552908 - MTD LTR MaLR -1 418 3 1 1501 324 0 0 0 chr4 120077675 120077711 -35552409 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1501 24 0 0 0 chr4 120077759 120077783 -35552337 + GC_rich Low_complexity Low_complexity 1 24 0 1 1501 243 0 0 0 chr4 120077876 120077903 -35552217 + (CCG)n Simple_repeat Simple_repeat 2 28 0 1 1501 21 0 0 0 chr4 120078028 120078049 -35552071 + GC_rich Low_complexity Low_complexity 1 21 0 1 1501 191 250 63 89 chr4 120078652 120078731 -35551389 - L3b LINE CR1 -26 456 380 1 1501 196 284 27 0 chr4 120079269 120079343 -35550777 + MIRc SINE MIR 193 268 0 1 1501 540 282 80 6 chr4 120079863 120080038 -35550082 - B3A SINE B2 -10 188 1 1 1501 26 30 0 0 chr4 120080985 120081018 -35549102 + AT_rich Low_complexity Low_complexity 1 33 0 1 1501 232 309 15 0 chr4 120081580 120081648 -35548472 + MIRb SINE MIR 26 94 -174 1 1501 31 0 0 0 chr4 120081663 120081694 -35548426 + AT_rich Low_complexity Low_complexity 1 31 0 1 1501 7896 59 4 6 chr4 120082293 120083817 -35546303 - L1Md_F2 LINE L1 -6 6576 5057 1 1501 206 261 72 0 chr4 120084709 120084778 -35545342 + L2 LINE L2 744 817 -2602 1 1501 387 0 0 0 chr4 120085526 120085569 -35544551 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1501 382 230 0 0 chr4 120085638 120085712 -35544408 - RSINE1 SINE B4 -89 76 3 1 1501 190 273 59 76 chr4 120085744 120085863 -35544257 + MIRc SINE MIR 118 234 -34 1 1501 201 304 94 55 chr4 120086014 120086216 -35543904 + L2 LINE L2 1980 2189 -1230 1 1501 1768 99 42 71 chr4 120086354 120086690 -35543430 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1501 1161 62 0 14 chr4 120087247 120087395 -35542725 - B1_Mus2 SINE Alu -1 146 1 1 1501 1328 76 5 16 chr4 120087463 120087650 -35542470 - B2_Mm2 SINE B2 -9 186 2 1 1501 1698 186 124 16 chr4 120087739 120088110 -35542010 + MTD LTR MaLR 1 411 -8 1 1501 226 233 16 16 chr4 120088335 120088396 -35541724 + B1_Mm SINE Alu 87 147 0 1 1501 1995 180 85 10 chr4 120088599 120088986 -35541134 - MTC LTR MaLR -3 418 3 1 1501 361 297 82 76 chr4 120089133 120089238 -35540882 + L1M5 LINE L1 5389 5505 -786 1 1501 1158 126 23 6 chr4 120089238 120089414 -35540706 + B2_Mm2 SINE B2 4 182 -13 1 1501 361 296 75 75 chr4 120089414 120089516 -35540604 + L1M5 LINE L1 5506 5607 -633 1 1501 1464 165 155 65 chr4 120089520 120089921 -35540199 + Lx9 LINE L1 7200 7636 -8 1 1501 800 176 27 27 chr4 120089996 120090142 -35539978 + B1_Mur2 SINE Alu 4 149 0 1 1501 270 352 0 0 chr4 120090811 120090902 -35539218 - MIR SINE MIR -147 115 25 1 1501 546 283 46 11 chr4 120091484 120091659 -35538461 + B3A SINE B2 1 181 -17 1 1501 238 284 75 45 chr4 120092462 120092595 -35537525 + ORR1E LTR MaLR 9 145 -214 1 1501 695 272 96 59 chr4 120092897 120093167 -35536953 - B4 SINE B4 -9 283 4 1 1501 642 293 39 0 chr4 120094663 120094702 -35535418 - B3 SINE B2 -3 213 170 1 1501 192 40 0 0 chr4 120094702 120094727 -35535393 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 1501 642 293 39 0 chr4 120094727 120094892 -35535228 - B3 SINE B2 -47 169 3 1 1501 1054 291 21 4 chr4 120094983 120095262 -35534858 - B4A SINE B4 -8 284 1 1 1501 800 291 34 53 chr4 120095393 120095716 -35534404 + L1MC3 LINE L1 7325 7641 -144 1 1501 957 31 39 0 chr4 120096194 120096321 -35533799 + B1_Mus1 SINE Alu 17 148 0 1 1501 207 100 0 0 chr4 120096321 120096351 -35533769 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1501 14676 65 14 21 chr4 120096498 120099356 -35530764 - L1VL2 LINE L1 -626 2989 153 1 1501 891 212 75 5 chr4 120100004 120100217 -35529903 + B4A SINE B4 2 229 -63 1 1501 743 269 40 65 chr4 120100243 120100371 -35529749 - L1MA4 LINE L1 -371 5929 5794 1 1501 252 0 0 0 chr4 120100371 120100399 -35529721 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1501 186 43 0 0 chr4 120100402 120100425 -35529695 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1501 743 269 40 65 chr4 120100425 120100446 -35529674 - L1MA4 LINE L1 -507 5793 5785 1 1501 1438 222 93 40 chr4 120100446 120100844 -35529276 - MTD LTR MaLR 0 419 1 1 1501 743 269 40 65 chr4 120100844 120101011 -35529109 - L1MA4 LINE L1 -516 5784 5616 1 1501 393 257 30 30 chr4 120101023 120101190 -35528930 - L1MA4 LINE L1 -151 6029 5864 1 1501 248 191 0 0 chr4 120101190 120101232 -35528888 + B1_Mur1 SINE Alu 96 137 -12 2 1501 284 278 11 0 chr4 120101263 120101353 -35528767 + L1M2 LINE L1 4982 5072 -1071 2 1501 321 239 64 9 chr4 120101342 120101452 -35528668 + L1M2 LINE L1 5724 5839 -461 2 1501 327 152 83 17 chr4 120101470 120101530 -35528590 - L1MA4 LINE L1 -729 5571 5508 1 1501 274 256 0 143 chr4 120101561 120101652 -35528468 - B4 SINE B4 -15 277 200 2 1501 496 254 113 43 chr4 120101641 120101826 -35528294 - MLT1-int LTR MaLR -94 1277 1080 2 1501 522 153 107 25 chr4 120101827 120101948 -35528172 - RMER1B Other Other -14 1052 922 2 1501 635 376 38 22 chr4 120101984 120102297 -35527823 - MLT1-int LTR MaLR -298 1073 756 2 1501 779 257 110 38 chr4 120102361 120102809 -35527311 - MLT1-int LTR MaLR -777 594 1 2 1501 447 16 0 31 chr4 120103017 120103082 -35527038 + B1_Mur4 SINE Alu 88 150 0 2 1501 198 0 0 0 chr4 120103082 120103104 -35527016 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1501 180 0 0 0 chr4 120103102 120103122 -35526998 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1501 960 31 0 16 chr4 120104301 120104430 -35525690 + B1_Mus2 SINE Alu 21 147 0 2 1501 198 0 0 0 chr4 120104430 120104452 -35525668 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1501 1732 26 0 0 chr4 120104503 120104696 -35525424 - B2_Mm1a SINE B2 0 193 1 2 1501 3113 44 0 8 chr4 120104723 120105110 -35525010 - L1Md_F2 LINE L1 0 6582 6199 2 1501 3189 160 5 42 chr4 120105306 120105901 -35524219 - RLTR20A2 LTR ERVK -5 573 1 2 1501 194 374 59 27 chr4 120106706 120106893 -35523227 + MIR SINE MIR 70 262 0 2 1501 326 252 25 8 chr4 120106959 120107079 -35523041 + Charlie5 DNA MER1_type 2239 2360 -264 2 1501 1241 41 0 0 chr4 120107100 120107247 -35522873 + B1_Mm SINE Alu 1 147 0 2 1501 841 163 0 0 chr4 120107398 120107533 -35522587 + B1_Mur4 SINE Alu 7 141 -9 2 1501 1290 116 16 0 chr4 120107544 120107733 -35522387 + B2_Mm2 SINE B2 2 193 -2 2 1501 22 26 0 25 chr4 120107737 120107765 -35522355 + AT_rich Low_complexity Low_complexity 1 28 0 2 1501 1401 65 49 0 chr4 120107765 120107950 -35522170 + B2_Mm2 SINE B2 2 195 0 2 1501 22 26 0 25 chr4 120107950 120107961 -35522159 + AT_rich Low_complexity Low_complexity 1 11 0 2 1501 393 201 329 25 chr4 120107968 120108126 -35521994 - B3 SINE B2 -10 206 1 2 1501 227 225 229 38 chr4 120108127 120108284 -35521836 - L1M3 LINE L1 -1022 5118 4932 2 1501 23 68 0 0 chr4 120108327 120108371 -35521749 + AT_rich Low_complexity Low_complexity 1 44 0 2 1501 961 246 81 33 chr4 120108444 120108717 -35521403 - B4A SINE B4 -2 290 5 2 1501 452 270 156 38 chr4 120108718 120108971 -35521149 - L1M3 LINE L1 -1486 4660 4409 2 1501 678 176 312 6 chr4 120108971 120109131 -35520989 + B3 SINE B2 2 210 -6 2 1501 452 270 156 38 chr4 120109131 120109242 -35520878 - L1M3 LINE L1 -1738 4408 4255 2 1501 270 0 0 0 chr4 120109242 120109272 -35520848 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1501 452 270 156 38 chr4 120109272 120109356 -35520764 - L1M3 LINE L1 -1892 4254 4161 2 1501 351 236 26 86 chr4 120109362 120109478 -35520642 + MER2 DNA MER2_type 103 211 -134 2 1501 372 91 0 0 chr4 120109520 120109562 -35520558 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1501 1010 61 0 140 chr4 120109562 120109733 -35520387 - B1_Mus2 SINE Alu 0 147 1 2 1501 372 91 0 0 chr4 120109733 120109745 -35520375 + (T)n Simple_repeat Simple_repeat 1 12 0 2 1501 524 254 71 55 chr4 120109747 120110055 -35520065 - L1M3 LINE L1 -2092 4048 3736 2 1501 499 305 29 35 chr4 120110071 120110244 -35519876 + MER58A DNA MER1_type 31 202 -22 2 1501 350 269 93 40 chr4 120110275 120110426 -35519694 - B2_Mm2 SINE B2 -36 159 1 2 1501 5477 2 0 0 chr4 120111479 120112071 -35518049 + L1Md_A LINE L1 5991 6582 0 2 1501 677 273 172 15 chr4 120112547 120112758 -35517362 - MER47A DNA MER2_type -44 322 93 2 1501 1542 201 120 0 chr4 120112758 120113092 -35517028 + ORR1D1 LTR MaLR 1 374 0 2 1501 677 273 172 15 chr4 120113092 120113148 -35516972 - MER47A DNA MER2_type -274 92 14 2 1501 356 359 57 80 chr4 120113230 120113275 -35516845 - L3 LINE CR1 -17 4472 4436 2 1501 4142 142 112 88 chr4 120113275 120114155 -35515965 + RMER19B LTR ERVK 1 902 0 2 1501 356 359 57 80 chr4 120114155 120114460 -35515660 - L3 LINE CR1 -54 4435 4130 2 1501 898 236 5 48 chr4 120114476 120114685 -35515435 + B3 SINE B2 4 203 -13 2 1501 22 0 0 0 chr4 120114689 120114711 -35515409 + AT_rich Low_complexity Low_complexity 1 22 0 2 1501 1200 104 12 0 chr4 120114725 120114898 -35515222 + B2_Mm1t SINE B2 5 179 -14 2 1501 346 143 321 62 chr4 120114949 120115061 -35515059 + B2_Mm2 SINE B2 47 187 -8 2 1501 254 329 11 89 chr4 120115120 120115210 -35514910 - L3 LINE CR1 -489 4000 3918 2 1501 833 48 168 0 chr4 120116267 120116392 -35513728 - B1_Mus1 SINE Alu -1 147 2 2 1501 575 246 156 35 chr4 120116531 120116704 -35513416 + B3A SINE B2 5 198 0 2 1501 668 273 15 58 chr4 120116709 120116915 -35513205 + B3A SINE B2 2 198 0 2 1501 27 0 0 0 chr4 120116962 120116989 -35513131 + AT_rich Low_complexity Low_complexity 1 27 0 2 1501 192 350 104 28 chr4 120117045 120117189 -35512931 + MIRb SINE MIR 104 258 -10 2 1501 281 368 44 0 chr4 120117383 120117400 -35512720 + ID_B1 SINE B4 64 143 -81 2 1501 335 319 11 0 chr4 120117400 120117491 -35512629 + PB1D10 SINE Alu 4 95 -22 2 1501 892 232 0 81 chr4 120117515 120117630 -35512490 + L1_Mur3 LINE L1 5634 5743 -137 2 1501 1152 68 0 0 chr4 120117630 120117777 -35512343 + B1_Mus2 SINE Alu 1 147 0 2 1501 892 232 0 81 chr4 120117777 120117919 -35512201 + L1_Mur3 LINE L1 5744 5870 -10 2 1501 1450 203 17 3 chr4 120117920 120118211 -35511909 + Lx7 LINE L1 6806 7100 -596 2 1501 328 261 43 0 chr4 120118195 120118287 -35511833 + Lx7 LINE L1 7266 7361 -335 2 1501 3802 194 39 18 chr4 120118316 120119133 -35510987 + Lx2B LINE L1 6163 6996 -4 2 1501 314 230 139 10 chr4 120119223 120119324 -35510796 - MLT1B LTR MaLR -266 124 11 2 1501 21 0 0 0 chr4 120119416 120119437 -35510683 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 189 0 0 0 chr4 120119513 120119534 -35510586 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1501 273 320 92 28 chr4 120119617 120119762 -35510358 - MIR3 SINE MIR -54 154 3 2 1501 2081 110 116 0 chr4 120119875 120120221 -35509899 - ORR1B1 LTR MaLR -8 386 1 2 1501 633 299 28 0 chr4 120120263 120120440 -35509680 - B3A SINE B2 -16 182 1 2 1501 808 187 14 0 chr4 120120712 120120851 -35509269 - B1_Mur1 SINE Alu -7 142 2 2 1501 328 244 184 58 chr4 120120960 120121178 -35508942 - Charlie5 DNA MER1_type -22 2602 2340 2 1501 477 217 362 0 chr4 120121178 120121330 -35508790 + B3 SINE B2 3 209 -7 2 1501 328 244 184 58 chr4 120121330 120121420 -35508700 - Charlie5 DNA MER1_type -285 2339 2255 2 1501 312 268 23 75 chr4 120121455 120121588 -35508532 - Charlie5 DNA MER1_type -2497 127 2 2 1501 634 254 8 0 chr4 120122449 120122579 -35507541 + B3A SINE B2 1 131 -67 2 1501 559 179 77 21 chr4 120122595 120122738 -35507382 - Lx5 LINE L1 0 7050 6900 2 1501 240 309 21 106 chr4 120122738 120122832 -35507288 + B3 SINE B2 118 203 -13 2 1501 216 0 0 0 chr4 120122991 120123015 -35507105 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1501 1088 103 0 7 chr4 120123024 120123170 -35506950 - B1_Mus1 SINE Alu -1 147 3 2 1501 231 319 121 0 chr4 120123172 120123263 -35506857 + L2a LINE L2 3321 3422 -4 2 1501 2104 241 72 14 chr4 120123493 120124057 -35506063 - Lx8 LINE L1 -270 7374 6637 2 1501 827 276 84 46 chr4 120124075 120124360 -35505760 - RMER15-int LTR ERVL -496 4503 4208 2 1501 539 262 101 56 chr4 120125156 120125334 -35504786 - MTE2b LTR MaLR -191 188 3 2 1501 1083 248 100 3 chr4 120125357 120125656 -35504464 - MTE-int LTR MaLR -36 1544 1217 2 1501 355 265 186 31 chr4 120127115 120127313 -35502807 + MIRc SINE MIR 1 224 -38 2 1501 224 293 218 8 chr4 120127514 120127638 -35502482 + MIRc SINE MIR 4 153 -115 2 1501 1066 275 56 28 chr4 120128426 120128748 -35501372 - MTE2b LTR MaLR -4 375 45 2 1501 335 333 149 20 chr4 120128870 120129118 -35501002 + L2c LINE L2 3106 3385 -2 2 1501 313 151 10 70 chr4 120129875 120129975 -35500145 + T-rich Low_complexity Low_complexity 2 95 0 2 1501 216 86 0 0 chr4 120130317 120130352 -35499768 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1501 1146 55 14 0 chr4 120130352 120130497 -35499623 - B1_Mus1 SINE Alu 0 148 2 2 1501 250 337 98 10 chr4 120130656 120130860 -35499260 + L1M5 LINE L1 4731 4952 -1194 2 1501 27 29 0 0 chr4 120130973 120131007 -35499113 + AT_rich Low_complexity Low_complexity 1 34 0 2 1501 525 220 25 33 chr4 120131292 120131414 -35498706 + B1F SINE Alu 29 149 0 2 1501 241 83 0 0 chr4 120131479 120131515 -35498605 - Lx8 LINE L1 -4 7469 7434 2 1501 239 311 58 36 chr4 120131537 120131674 -35498446 + L1M5 LINE L1 5528 5667 -457 2 1501 333 258 43 11 chr4 120131907 120132001 -35498119 - MLT2B3 LTR ERVL -457 97 1 2 1501 183 234 14 123 chr4 120132358 120132431 -35497689 + L2a LINE L2 3274 3338 -88 2 1501 798 237 30 56 chr4 120132645 120132842 -35497278 + B3A SINE B2 6 197 -1 2 1501 290 146 73 0 chr4 120133062 120133117 -35497003 - MIRc SINE MIR -118 150 92 2 1501 504 284 61 40 chr4 120133951 120134149 -35495971 - MER3 DNA MER1_type 0 209 8 2 1501 1383 287 183 17 chr4 120136431 120137451 -35492669 + L1MEc LINE L1 106 1295 -5105 2 1501 346 306 171 28 chr4 120137810 120138062 -35492058 + B4A SINE B4 1 288 -4 2 1501 443 261 8 153 chr4 120138197 120138459 -35491661 + L1M2 LINE L1 3945 4168 -1975 2 1501 255 234 74 9 chr4 120138728 120138836 -35491284 + L1MB7 LINE L1 5680 5794 -390 2 1501 266 302 126 29 chr4 120138834 120139008 -35491112 + L1MB7 LINE L1 5961 6151 -33 2 1501 229 246 0 15 chr4 120139009 120139075 -35491045 + L1M5 LINE L1 5598 5662 -502 2 1501 296 186 75 113 chr4 120139091 120139134 -35490986 + MER2 DNA MER2_type 31 73 -272 2 1501 456 234 43 28 chr4 120139134 120139275 -35490845 + B1F1 SINE Alu 1 143 -6 2 1501 296 186 75 113 chr4 120139275 120139364 -35490756 + MER2 DNA MER2_type 74 158 -187 2 1501 1212 34 0 7 chr4 120139567 120139715 -35490405 - B1_Mus1 SINE Alu 0 148 2 2 1501 21 0 0 0 chr4 120140259 120140280 -35489840 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 222 37 0 0 chr4 120141385 120141412 -35488708 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1501 639 158 100 0 chr4 120142048 120142168 -35487952 - B1_Mur3 SINE Alu 0 149 18 2 1501 363 276 30 35 chr4 120142265 120142434 -35487686 + CT-rich Low_complexity Low_complexity 3 170 0 2 1501 337 308 0 0 chr4 120142731 120142809 -35487311 + ID4 SINE ID 3 80 -3 2 1501 1221 41 0 0 chr4 120142829 120142976 -35487144 + B1_Mm SINE Alu 1 147 0 3 1501 1362 99 5 0 chr4 120143022 120143213 -35486907 + B2_Mm1t SINE B2 1 192 -1 3 1501 230 325 8 16 chr4 120143233 120143358 -35486762 + (TATATG)n Simple_repeat Simple_repeat 2 125 0 3 1501 237 342 33 8 chr4 120143404 120143525 -35486595 - L1MC LINE L1 -1960 5922 5799 3 1501 217 229 146 0 chr4 120143577 120143625 -35486495 + ID SINE ID 4 58 -166 3 1501 227 287 0 105 chr4 120143677 120143782 -35486338 + ID4_ SINE ID 2 95 -57 3 1501 1097 241 5 31 chr4 120143794 120144017 -35486103 + ID_B1 SINE B4 7 223 -1 3 1501 1392 48 42 21 chr4 120144129 120144319 -35485801 + B2_Mm2 SINE B2 2 195 0 3 1501 1395 71 11 0 chr4 120144340 120144524 -35485596 + B2_Mm1t SINE B2 2 187 -6 3 1501 1300 84 11 0 chr4 120144556 120144734 -35485386 + B2_Mm1t SINE B2 2 181 -12 3 1501 336 149 302 9 chr4 120144763 120144875 -35485245 + B2_Mm2 SINE B2 46 195 0 3 1501 1085 81 0 0 chr4 120144938 120145074 -35485046 + B1_Mus2 SINE Alu 2 137 -10 3 1501 188 86 0 28 chr4 120145074 120145110 -35485010 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1501 736 326 133 69 chr4 120145335 120146145 -35483975 + L1MC4 LINE L1 482 1354 -4861 3 1501 1474 73 5 0 chr4 120146145 120146336 -35483784 - B2_Mm1t SINE B2 0 193 2 3 1501 736 326 133 69 chr4 120146336 120146435 -35483685 + L1MC4 LINE L1 1355 1448 -4767 3 1501 213 182 0 0 chr4 120146435 120146468 -35483652 + polypurine Low_complexity Low_complexity 1 33 0 3 1501 2533 115 20 20 chr4 120146479 120146879 -35483241 - Lx LINE L1 -3 6651 6252 3 1501 4536 141 139 41 chr4 120146878 120147607 -35482513 - Lx3C LINE L1 -188 6788 6007 3 1501 1668 26 0 0 chr4 120147607 120147798 -35482322 - B2_Mm1a SINE B2 -1 192 2 3 1501 4536 141 139 41 chr4 120147798 120148036 -35482084 - Lx3C LINE L1 -970 6006 5726 3 1501 242 354 97 7 chr4 120148130 120148275 -35481845 + MER5B DNA MER1_type 1 158 -20 3 1501 192 261 68 95 chr4 120149293 120149441 -35480679 + MIR SINE MIR 63 206 -56 3 1501 1096 272 164 32 chr4 120149677 120150110 -35480010 + Lx5 LINE L1 6556 7045 -5 3 1501 228 299 68 11 chr4 120150152 120150240 -35479880 + MIR SINE MIR 84 176 -86 3 1501 181 356 0 14 chr4 120150384 120150458 -35479662 + MIRm SINE MIR 71 143 -133 3 1501 188 277 32 89 chr4 120150493 120150616 -35479504 - L3 LINE CR1 -3595 894 779 3 1501 436 209 3 35 chr4 120150951 120151055 -35479065 - B1_Mur4 SINE Alu -21 96 1 3 1501 1127 192 14 14 chr4 120151306 120151517 -35478603 - B3 SINE B2 -5 211 1 3 1501 183 231 17 103 chr4 120151862 120151920 -35478200 + L3 LINE CR1 2138 2190 -2299 3 1501 615 274 0 43 chr4 120152434 120152598 -35477522 - RSINE1 SINE B4 -6 159 3 3 1501 329 223 0 11 chr4 120152714 120152809 -35477311 + (TATG)n Simple_repeat Simple_repeat 3 96 0 3 1501 235 138 72 58 chr4 120153075 120153144 -35476976 + HAL1b LINE L1 1066 1135 -874 3 1501 319 316 98 7 chr4 120153433 120153586 -35476534 + L1MEe LINE L1 1869 2035 -4131 3 1501 243 0 0 0 chr4 120153732 120153759 -35476361 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1501 435 281 35 0 chr4 120153805 120153919 -35476201 + PB1 SINE Alu 5 122 -5 3 1501 1332 89 11 0 chr4 120153985 120154175 -35475945 - B2_Mm1t SINE B2 0 193 2 3 1501 319 271 19 103 chr4 120154193 120154349 -35475771 + MT2B LTR ERVL 127 269 -332 3 1501 664 250 36 14 chr4 120154242 120154380 -35475740 + B1_Mur1 SINE Alu 6 146 -3 3 1501 306 300 97 71 chr4 120154604 120154682 -35475438 - RMER15 LTR ERVL -1 574 502 3 1501 1383 71 33 0 chr4 120154682 120154866 -35475254 + B2_Mm1t SINE B2 1 190 -3 3 1501 306 300 97 71 chr4 120154866 120155013 -35475107 - RMER15 LTR ERVL -74 501 343 3 1501 25 0 0 0 chr4 120155441 120155466 -35474654 + AT_rich Low_complexity Low_complexity 1 25 0 3 1501 438 294 105 46 chr4 120155526 120155679 -35474441 + RSINE1 SINE B4 2 163 -2 3 1501 324 260 51 44 chr4 120155748 120155885 -35474235 + L1MEe LINE L1 4483 4620 -1526 3 1501 22 0 0 0 chr4 120155885 120155907 -35474213 + AT_rich Low_complexity Low_complexity 1 22 0 3 1501 424 114 0 7 chr4 120155936 120156009 -35474111 + B1_Mus2 SINE Alu 41 138 -9 3 1501 245 51 0 25 chr4 120156009 120156049 -35474071 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1501 4352 55 7 52 chr4 120157046 120157660 -35472460 - L1_Mus2 LINE L1 0 6566 5981 3 1501 1421 166 369 13 chr4 120157858 120158248 -35471872 - RLTR24 LTR ERV1 0 529 1 3 1501 240 233 108 108 chr4 120158380 120158510 -35471610 - L2a LINE L2 -3 3423 3294 3 1501 211 229 61 20 chr4 120158518 120158567 -35471553 + ID4_ SINE ID 15 65 -18 3 1501 913 258 132 7 chr4 120159416 120159779 -35470341 + L1MEe LINE L1 5311 5724 -454 3 1501 245 297 108 17 chr4 120160697 120160817 -35469303 - MIRc SINE MIR -38 230 100 3 1501 1625 26 0 20 chr4 120161417 120161613 -35468507 - B2_Mm1a SINE B2 -1 192 1 3 1501 921 72 69 42 chr4 120161646 120161790 -35468330 + B1_Mus1 SINE Alu 1 148 0 3 1501 777 153 1 117 chr4 120162110 120162294 -35467826 - ORR1C2 LTR MaLR -229 155 3 3 1501 1070 224 5 0 chr4 120162674 120162884 -35467236 - B3 SINE B2 -5 211 1 3 1501 365 296 51 15 chr4 120162893 120163030 -35467090 - B1F1 SINE Alu -7 142 1 3 1501 243 261 0 0 chr4 120163038 120163107 -35467013 + A-rich Low_complexity Low_complexity 1 69 0 3 1501 199 360 71 30 chr4 120163126 120163295 -35466825 - L2 LINE L2 -457 2962 2787 3 1501 25 0 0 0 chr4 120163628 120163653 -35466467 + AT_rich Low_complexity Low_complexity 1 25 0 3 1501 1052 98 91 11 chr4 120164149 120164163 -35465957 - B2_Mm1t SINE B2 -4 189 176 3 1501 207 0 0 0 chr4 120164163 120164186 -35465934 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1501 1052 98 91 11 chr4 120164186 120164346 -35465774 - B2_Mm1t SINE B2 -18 175 1 3 1501 913 304 227 29 chr4 120165230 120165713 -35464407 - Lx8 LINE L1 0 7473 6895 3 1501 23 0 0 0 chr4 120165725 120165748 -35464372 + AT_rich Low_complexity Low_complexity 1 23 0 3 1501 561 68 0 0 chr4 120165916 120165990 -35464130 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1501 390 129 0 0 chr4 120165990 120166052 -35464068 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1501 641 87 0 2 chr4 120166374 120166473 -35463647 - L1Md_F2 LINE L1 -641 5925 5828 3 1501 5404 52 0 1 chr4 120166473 120167125 -35462995 + L1Md_F2 LINE L1 5913 6563 -19 3 1501 2721 45 6 3 chr4 120168255 120168591 -35461529 + L1_Mus3 LINE L1 6298 6634 -4 3 1501 360 163 162 67 chr4 120168717 120168822 -35461298 - MTEb LTR MaLR -104 275 161 3 1501 191 324 94 38 chr4 120169112 120169218 -35460902 - MIRb SINE MIR -132 136 25 3 1501 1119 300 36 64 chr4 120169891 120170279 -35459841 - MTEa LTR MaLR 0 379 3 3 1501 954 228 19 19 chr4 120170377 120170592 -35459528 - B3 SINE B2 0 216 2 3 1501 740 230 97 121 chr4 120170641 120170898 -35459222 + L1MB1 LINE L1 5734 5985 -204 3 1501 847 217 77 52 chr4 120170911 120171144 -35458976 + L1MA10 LINE L1 6051 6289 -45 3 1501 765 147 236 23 chr4 120171164 120171338 -35458782 - B3 SINE B2 -4 212 2 3 1501 4382 122 23 12 chr4 120171451 120172176 -35457944 - RMER6A LTR ERVK -23 733 1 3 1501 303 167 139 0 chr4 120172178 120172250 -35457870 - Charlie1b DNA MER1_type -362 161 80 3 1501 551 308 41 14 chr4 120172403 120172569 -35457551 - B4A SINE B4 -115 177 7 3 1501 327 318 65 0 chr4 120172616 120172723 -35457397 - PB1D7 SINE Alu -6 114 1 3 1501 2800 222 15 27 chr4 120172900 120173487 -35456633 + RMER1C Other Other 550 1129 -213 3 1501 7316 33 0 3 chr4 120173479 120174333 -35455787 - L1Md_F2 LINE L1 0 6582 5732 3 1501 304 29 0 0 chr4 120174328 120174363 -35455757 + L1Md_F2 LINE L1 5707 5741 -841 3 1501 423 132 91 13 chr4 120174347 120174424 -35455696 + RMER1C Other Other 1107 1189 -153 3 1501 222 191 0 0 chr4 120174441 120174488 -35455632 + CT-rich Low_complexity Low_complexity 2 48 0 3 1501 877 141 37 0 chr4 120174492 120174627 -35455493 + RMER1C Other Other 1201 1340 -2 3 1501 243 180 0 21 chr4 120174667 120174720 -35455400 - L1M4 LINE L1 -523 5656 5605 3 1501 730 308 111 32 chr4 120175111 120175553 -35454567 + L2 LINE L2 2108 2584 -835 3 1501 370 227 120 0 chr4 120175641 120175716 -35454404 - B4A SINE B4 -207 85 2 3 1501 297 277 218 70 chr4 120175821 120176267 -35453853 - L1ME3A LINE L1 -218 5955 5444 3 1501 400 247 26 0 chr4 120176308 120176385 -35453735 - B4A SINE B4 -210 82 4 3 1501 261 0 0 0 chr4 120176397 120176426 -35453694 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1501 804 279 65 0 chr4 120176426 120176627 -35453493 - B4 SINE B4 -75 217 4 3 1501 2060 182 55 18 chr4 120177436 120177834 -35452286 + MTC LTR MaLR 1 413 -8 3 1501 255 125 0 0 chr4 120179116 120179156 -35450964 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 3 1501 1146 88 0 0 chr4 120179276 120179423 -35450697 - B1_Mus2 SINE Alu 0 147 1 3 1501 180 0 0 0 chr4 120179472 120179492 -35450628 + (CCA)n Simple_repeat Simple_repeat 3 22 0 3 1501 187 324 79 26 chr4 120179587 120179701 -35450419 + L3 LINE CR1 4168 4287 -202 3 1501 860 127 217 60 chr4 120181104 120181288 -35448832 - B3 SINE B2 0 216 4 3 1501 620 261 137 13 chr4 120181873 120182106 -35448014 - L1MCa LINE L1 -1206 5115 4854 3 1501 912 118 0 15 chr4 120182186 120182323 -35447797 + B1_Mur2 SINE Alu 10 144 -5 3 1501 347 133 49 87 chr4 120182322 120182405 -35447715 + ORR1C2 LTR MaLR 330 406 -15 3 1501 253 199 202 12 chr4 120182418 120182581 -35447539 - L1MCa LINE L1 -4541 1967 1774 3 1501 706 83 86 18 chr4 120182763 120182898 -35447222 - PB1D9 SINE Alu 0 149 10 3 1501 483 164 239 8 chr4 120182797 120182914 -35447206 - B4 SINE B4 -69 223 80 3 1501 388 195 76 8 chr4 120182921 120183040 -35447080 - L1MCa LINE L1 -4855 1653 1527 3 1501 246 244 76 13 chr4 120183140 120183219 -35446901 - PB1 SINE Alu 0 127 44 3 1501 1015 205 187 39 chr4 120183205 120183521 -35446599 - MTD LTR MaLR -14 393 30 3 1501 361 318 45 45 chr4 120183571 120183726 -35446394 - MLT1G LTR MaLR -436 155 1 3 1501 382 301 183 116 chr4 120183954 120184184 -35445936 - MLT1G-int LTR MaLR -332 1157 899 3 1501 1604 31 5 15 chr4 120184184 120184379 -35445741 - B2_Mm1t SINE B2 0 193 1 4 1501 382 301 183 116 chr4 120184379 120184569 -35445551 - MLT1G-int LTR MaLR -591 898 709 3 1501 1349 90 26 0 chr4 120184586 120184775 -35445345 + B2_Mm2 SINE B2 1 194 -1 4 1501 696 229 29 0 chr4 120184970 120185110 -35445010 - B1_Mur1 SINE Alu -1 148 5 4 1501 586 336 103 33 chr4 120185140 120185393 -35444727 - MLT1G-int LTR MaLR -1083 406 129 3 1501 464 157 0 67 chr4 120185393 120185482 -35444638 + ID4 SINE ID 1 83 0 4 1501 586 336 103 33 chr4 120185482 120185588 -35444532 - MLT1G-int LTR MaLR -1361 128 23 3 1501 1198 60 105 18 chr4 120185608 120185779 -35444341 + B2_Mm2 SINE B2 1 186 -9 4 1501 338 281 182 15 chr4 120185902 120186122 -35443998 - MLT1G LTR MaLR -187 361 132 3 1501 694 257 52 119 chr4 120186249 120186777 -35443343 - L1ME2z LINE L1 -290 6154 5667 4 1501 194 33 0 62 chr4 120186827 120186859 -35443261 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 4 1501 376 240 73 0 chr4 120186912 120187008 -35443112 - PB1D10 SINE Alu -8 109 7 4 1501 264 263 0 0 chr4 120186958 120187015 -35443105 - ID_B1 SINE B4 -87 137 81 4 1501 942 280 54 7 chr4 120187029 120187306 -35442814 - B4A SINE B4 -2 290 1 4 1501 180 375 0 18 chr4 120188561 120188618 -35441502 - L2b LINE L2 -9 3366 3311 4 1501 579 178 84 0 chr4 120191806 120191913 -35438207 - B1_Mur3 SINE Alu 0 149 34 4 1501 1441 60 11 0 chr4 120191949 120192133 -35437987 + B2_Mm1t SINE B2 1 186 -7 4 1501 424 293 0 0 chr4 120192172 120192271 -35437849 + PB1D10 SINE Alu 14 112 -5 4 1501 837 91 0 8 chr4 120192373 120192495 -35437625 + B2_Mm2 SINE B2 75 195 0 4 1501 277 270 52 0 chr4 120192628 120192743 -35437377 - L1MC4 LINE L1 -385 7657 7537 4 1501 220 356 38 9 chr4 120192752 120192857 -35437263 - L2b LINE L2 -10 3365 3258 4 1502 664 198 88 53 chr4 120193770 120193995 -35436125 - MTB_Mm LTR MaLR -157 262 1 4 1502 934 335 14 32 chr4 120194411 120194695 -35435425 + B4A SINE B4 14 292 0 4 1502 210 37 0 0 chr4 120195436 120195463 -35434657 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1502 216 329 78 30 chr4 120196941 120197107 -35433013 - L2 LINE L2 -2412 1007 834 4 1502 305 333 10 0 chr4 120198059 120198155 -35431965 + MIRb SINE MIR 41 137 -131 4 1502 229 161 54 0 chr4 120198474 120198530 -35431590 + (CACGT)n Simple_repeat Simple_repeat 1 59 0 4 1502 631 245 46 7 chr4 120198732 120198884 -35431236 - MLT1A0 LTR MaLR -1 364 207 4 1502 311 187 218 27 chr4 120198921 120199031 -35431089 - MLT1A0 LTR MaLR -259 131 1 4 1502 3907 30 38 4 chr4 120199739 120200208 -35429912 + L1Md_F2 LINE L1 6098 6582 0 4 1502 181 204 100 20 chr4 120200288 120200338 -35429782 - L4 LINE RTE -185 1844 1791 4 1502 216 351 62 38 chr4 120202832 120202912 -35427208 + MIR3 SINE MIR 96 177 -31 4 1502 290 203 46 15 chr4 120203640 120203705 -35426415 + RSINE1 SINE B4 60 126 -39 4 1502 834 34 17 17 chr4 120203738 120203857 -35426263 + (TTTCC)n Simple_repeat Simple_repeat 1 119 0 4 1502 428 298 6 0 chr4 120203869 120204040 -35426080 + C-rich Low_complexity Low_complexity 4 175 0 4 1502 1268 34 0 0 chr4 120204065 120204211 -35425909 - B1_Mus1 SINE Alu -1 147 2 4 1502 249 257 0 13 chr4 120207562 120207637 -35422483 + (CCCCAG)n Simple_repeat Simple_repeat 6 79 0 4 1502 210 192 57 19 chr4 120209998 120210051 -35420069 - PB1D10 SINE Alu -16 101 47 4 1502 223 203 58 207 chr4 120210017 120210104 -35420016 - B1F SINE Alu -64 85 12 4 1502 3802 25 5 11 chr4 120210753 120211192 -35418928 - RLTR10C LTR ERVK 0 436 1 4 1502 300 53 0 0 chr4 120211204 120211242 -35418878 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 4 1502 22 56 0 0 chr4 120213157 120213193 -35416927 + AT_rich Low_complexity Low_complexity 1 36 0 4 1502 402 331 45 26 chr4 120213520 120213675 -35416445 - B4A SINE B4 0 292 135 4 1502 1215 53 0 0 chr4 120213717 120213867 -35416253 + B2_Mm2 SINE B2 1 150 -45 4 1502 320 290 40 0 chr4 120214962 120215062 -35415058 - PB1D7 SINE Alu -5 115 12 4 1502 785 95 26 8 chr4 120216577 120216694 -35413426 - PB1D9 SINE Alu 0 120 2 4 1502 209 360 90 0 chr4 120216983 120217083 -35413037 + L2b LINE L2 3266 3374 -1 4 1502 527 185 363 19 chr4 120217782 120217938 -35412182 + B3 SINE B2 7 216 0 4 1502 498 179 231 0 chr4 120217964 120218081 -35412039 + B1_Mur1 SINE Alu 1 144 -5 4 1502 1169 69 7 0 chr4 120218266 120218411 -35411709 - B1_Mus2 SINE Alu 0 147 2 4 1502 369 214 143 19 chr4 120218627 120218732 -35411388 - B1F SINE Alu -3 146 29 4 1502 656 134 256 16 chr4 120219196 120219317 -35410803 - B1_Mur4 SINE Alu 0 150 1 4 1502 515 192 359 0 chr4 120219326 120219482 -35410638 - B3 SINE B2 -4 212 1 4 1502 225 313 60 0 chr4 120219557 120219624 -35410496 - MIRb SINE MIR -163 105 35 4 1502 781 231 27 7 chr4 120220427 120220575 -35409545 + RSINE1 SINE B4 15 165 0 4 1502 449 250 22 0 chr4 120221026 120221118 -35409002 - PB1D10 SINE Alu -6 111 18 4 1502 610 200 89 0 chr4 120221264 120221399 -35408721 + B1_Mus2 SINE Alu 1 147 0 4 1502 1289 96 37 0 chr4 120221402 120221589 -35408531 + B2_Mm2 SINE B2 2 195 0 4 1502 192 125 0 0 chr4 120221590 120221622 -35408498 + (TAG)n Simple_repeat Simple_repeat 2 33 0 4 1502 1048 71 31 25 chr4 120221705 120221864 -35408256 + B2_Mm2 SINE B2 36 195 0 4 1502 1188 43 0 0 chr4 120222463 120222602 -35407518 - B1_Mus1 SINE Alu -9 139 1 4 1502 1213 75 13 0 chr4 120222675 120222834 -35407286 + B2_Mm2 SINE B2 1 161 -34 4 1502 288 0 0 0 chr4 120222837 120222869 -35407251 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1502 1559 189 63 16 chr4 120222871 120223188 -35406932 + MTC LTR MaLR 90 421 0 4 1502 390 300 50 84 chr4 120223391 120223656 -35406464 - L1ME2 LINE L1 -237 5927 5671 4 1502 722 190 259 0 chr4 120223656 120223830 -35406290 - ID_B1 SINE B4 -4 220 2 4 1502 390 300 50 84 chr4 120223830 120223862 -35406258 - L1ME2 LINE L1 -494 5670 5640 4 1502 227 200 0 22 chr4 120224229 120224275 -35405845 - ID_B1 SINE B4 -51 173 129 4 1502 279 239 164 9 chr4 120224864 120225013 -35405107 - MIRm SINE MIR -79 189 8 4 1502 621 286 0 24 chr4 120225799 120225964 -35404156 + RSINE1 SINE B4 3 163 -2 4 1502 303 246 57 14 chr4 120226801 120226871 -35403249 + L1M5 LINE L1 3381 3453 -2693 4 1502 222 321 0 18 chr4 120226908 120226921 -35403199 + B4A SINE B4 74 85 -207 4 1502 248 260 4 4 chr4 120226921 120226984 -35403136 + B1F1 SINE Alu 1 63 -57 4 1502 355 277 189 0 chr4 120227042 120227190 -35402930 + MER5B DNA MER1_type 1 176 -2 4 1502 833 184 14 0 chr4 120227327 120227468 -35402652 + B1_Mur4 SINE Alu 1 143 -7 4 1502 30 0 0 0 chr4 120227470 120227500 -35402620 + AT_rich Low_complexity Low_complexity 1 30 0 4 1502 230 226 131 61 chr4 120228121 120228220 -35401900 + L1MC LINE L1 4892 4997 -1149 4 1502 456 264 225 17 chr4 120228232 120228463 -35401657 + L1M5 LINE L1 5060 5338 -808 4 1502 546 250 58 0 chr4 120228561 120228681 -35401439 - B1_Mm SINE Alu -18 129 3 4 1502 1174 75 0 7 chr4 120229171 120229318 -35400802 - B1_Mus2 SINE Alu 0 147 2 4 1502 845 235 71 0 chr4 120229719 120229915 -35400205 + B3 SINE B2 1 210 -6 4 1502 392 36 0 51 chr4 120229917 120229946 -35400174 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1502 1203 56 0 0 chr4 120229946 120230089 -35400031 + B1_Mus2 SINE Alu 5 147 0 4 1502 392 36 0 51 chr4 120230089 120230118 -35400002 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1502 319 333 21 0 chr4 120230542 120230635 -35399485 + PB1D10 SINE Alu 2 96 -21 4 1502 235 284 74 0 chr4 120231955 120232036 -35398084 - HAL1 LINE L1 -867 1640 1554 4 1502 865 135 77 0 chr4 120232043 120232199 -35397921 + URR1B DNA MER1_type 57 224 -1 4 1502 310 323 92 31 chr4 120232218 120232381 -35397739 - HAL1 LINE L1 -1004 1503 1331 4 1502 244 228 11 132 chr4 120232492 120232583 -35397537 + ID_B1 SINE B4 137 216 -8 4 1502 306 330 37 0 chr4 120232596 120232705 -35397415 - MER58B DNA MER1_type -44 297 185 4 1502 1067 39 39 0 chr4 120233749 120233877 -35396243 + B1_Mus1 SINE Alu 2 134 -14 4 1502 183 42 0 0 chr4 120233881 120233905 -35396215 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1502 299 216 30 111 chr4 120234347 120234446 -35395674 + MT2B LTR ERVL 167 257 -344 4 1502 742 180 16 0 chr4 120234358 120234480 -35395640 + B1_Mur3 SINE Alu 17 140 -9 4 1502 1243 14 0 39 chr4 120234990 120235144 -35394976 + B1_Mus1 SINE Alu 1 148 0 4 1502 1435 79 11 0 chr4 120235147 120235337 -35394783 + B2_Mm1a SINE B2 1 192 -1 4 1502 610 205 0 16 chr4 120235735 120235859 -35394261 + RMER10B LTR ERVL 229 350 -48 4 1502 226 261 172 57 chr4 120236656 120236833 -35393287 + L2b LINE L2 3226 3421 -5 4 1502 874 91 7 36 chr4 120236938 120237075 -35393045 + B1_Mus1 SINE Alu 16 148 0 4 1502 260 270 10 110 chr4 120238901 120238939 -35391181 + MT2B LTR ERVL 131 220 -381 4 1502 426 97 0 0 chr4 120238939 120239001 -35391119 + B1_Mus2 SINE Alu 2 63 -84 4 1502 254 215 131 60 chr4 120239036 120239120 -35391000 + MT2B LTR ERVL 168 257 -344 4 1502 604 190 0 25 chr4 120239049 120239155 -35390965 + B1_Mur3 SINE Alu 34 137 -12 4 1502 1027 74 74 0 chr4 120239155 120239290 -35390830 + B1_Mus2 SINE Alu 3 147 0 4 1502 604 190 0 25 chr4 120239290 120239302 -35390818 + B1_Mur3 SINE Alu 138 149 0 4 1502 238 288 46 43 chr4 120241005 120241112 -35389008 + B1F SINE Alu 11 114 -6 4 1502 270 0 0 0 chr4 120241527 120241557 -35388563 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 4 1502 188 288 104 35 chr4 120241882 120241997 -35388123 - L2 LINE L2 -467 2952 2830 4 1502 294 317 184 26 chr4 120244038 120244468 -35385652 + L2c LINE L2 1459 1956 -1463 4 1502 216 297 285 13 chr4 120244831 120245066 -35385054 + L2c LINE L2 2082 2380 -1039 4 1502 1156 48 0 14 chr4 120245318 120245465 -35384655 + B1_Mus2 SINE Alu 2 146 -1 5 1502 205 200 20 0 chr4 120245465 120245515 -35384605 + A-rich Low_complexity Low_complexity 1 51 0 5 1502 198 0 0 0 chr4 120245594 120245616 -35384504 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1502 1018 172 83 83 chr4 120245617 120245883 -35384237 - RCHARR1 DNA MER1_type -242 732 467 5 1502 960 93 65 0 chr4 120245927 120246066 -35384054 - B1_Mus1 SINE Alu 0 148 1 5 1502 543 278 40 27 chr4 120246079 120246227 -35383893 - ID_B1 SINE B4 -55 169 20 5 1502 1329 294 100 10 chr4 120246229 120246638 -35383482 - RCHARR1 DNA MER1_type -501 473 28 5 1502 260 227 0 35 chr4 120246792 120246862 -35383258 + L2c LINE L2 3207 3302 -85 4 1502 243 256 28 7 chr4 120246916 120246999 -35383121 - MIR SINE MIR -51 217 125 5 1502 1206 168 18 22 chr4 120247052 120247277 -35382843 + URR1B DNA MER1_type 1 224 -1 5 1502 1103 83 7 0 chr4 120247559 120247703 -35382417 + B1_Mus2 SINE Alu 2 146 -1 5 1502 200 122 0 24 chr4 120247704 120247746 -35382374 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1502 297 0 0 0 chr4 120247748 120247781 -35382339 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1502 252 0 0 0 chr4 120247781 120247808 -35382312 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1502 342 257 0 0 chr4 120248078 120248183 -35381937 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1502 1159 68 0 27 chr4 120248268 120248418 -35381702 + B1_Mm SINE Alu 1 146 -1 5 1502 2798 140 33 4 chr4 120248507 120248960 -35381160 - RMER4A LTR ERVK 0 466 1 5 1502 1208 68 0 0 chr4 120249457 120249603 -35380517 + B1_Mm SINE Alu 2 147 0 5 1502 192 40 0 0 chr4 120249608 120249633 -35380487 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1502 985 256 45 20 chr4 120249746 120249993 -35380127 + B4 SINE B4 38 290 -2 5 1502 221 296 57 3 chr4 120250248 120250328 -35379792 + L2c LINE L2 3328 3425 -1 4 1502 224 318 45 0 chr4 120250620 120250686 -35379434 + L2c LINE L2 3357 3425 -1 4 1502 862 256 52 33 chr4 120251245 120251455 -35378665 + ID_B1 SINE B4 7 220 -4 5 1502 656 199 81 0 chr4 120251459 120251595 -35378525 + B1_Mus1 SINE Alu 2 148 0 5 1502 1007 201 43 14 chr4 120252151 120252358 -35377762 - B3 SINE B2 0 216 4 5 1502 311 379 90 6 chr4 120253391 120253569 -35376551 - L1ME3A LINE L1 -41 6132 5940 5 1502 778 61 202 0 chr4 120253700 120253814 -35376306 + B1_Mus1 SINE Alu 2 138 -10 5 1502 233 29 0 29 chr4 120253814 120253849 -35376271 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1502 495 0 0 0 chr4 120253993 120254048 -35376072 + (TTAG)n Simple_repeat Simple_repeat 1 55 0 5 1502 430 257 36 27 chr4 120254077 120254189 -35375931 - ID_B1 SINE B4 -32 192 80 5 1502 351 0 0 0 chr4 120255595 120255634 -35374486 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1502 349 302 58 48 chr4 120255785 120255973 -35374147 - MIRb SINE MIR -54 214 25 5 1502 287 285 125 49 chr4 120256960 120257104 -35373016 - MER77 LTR ERVL -2 605 451 5 1502 699 164 102 199 chr4 120257100 120257248 -35372872 + URR1A DNA MER1_type 14 145 -81 5 1502 1128 62 7 7 chr4 120257248 120257393 -35372727 - B1_Mus2 SINE Alu 0 147 3 5 1502 699 164 102 199 chr4 120257393 120257480 -35372640 + URR1A DNA MER1_type 146 226 0 5 1502 351 296 339 43 chr4 120257480 120257760 -35372360 - MER77 LTR ERVL -151 412 63 5 1502 759 300 61 66 chr4 120258037 120258291 -35371829 + RLTR26 LTR ERVK 2 287 -355 5 1502 2357 15 86 0 chr4 120258291 120258560 -35371560 + RLTR10B LTR ERVK 1 292 0 5 1502 759 268 65 77 chr4 120258560 120258755 -35371365 + RLTR26 LTR ERVK 288 487 -155 5 1502 856 123 31 0 chr4 120258916 120259046 -35371074 + B1_Mur3 SINE Alu 15 148 -1 5 1502 344 207 7 6 chr4 120259447 120259534 -35370586 - B1_Mur3 SINE Alu -2 147 31 5 1502 1057 119 6 11 chr4 120259949 120260128 -35369992 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 5 1502 270 0 0 0 chr4 120260128 120260157 -35369963 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 5 1502 294 327 28 75 chr4 120260240 120260346 -35369774 + B1F1 SINE Alu 1 101 -48 5 1502 813 184 0 39 chr4 120260366 120260519 -35369601 - B1_Mur3 SINE Alu 0 149 3 5 1502 343 285 81 100 chr4 120260565 120260725 -35369395 + ID_B1 SINE B4 1 157 -67 5 1502 480 89 0 0 chr4 120260728 120260807 -35369313 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 1502 477 0 0 0 chr4 120261045 120261098 -35369022 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1502 229 339 133 43 chr4 120261099 120261287 -35368833 - MLT1L LTR MaLR -95 515 311 5 1502 188 296 0 0 chr4 120261915 120261959 -35368161 + L2a LINE L2 3118 3161 -265 5 1502 254 188 250 40 chr4 120262916 120263016 -35367104 + MER5A DNA MER1_type 1 121 -68 5 1502 468 0 0 0 chr4 120263221 120263273 -35366847 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1502 447 245 65 0 chr4 120263365 120263504 -35366616 - Charlie19a DNA Charlie -65 321 174 5 1502 234 312 65 0 chr4 120263807 120263900 -35366220 - Charlie19a DNA Charlie -287 99 1 5 1502 251 260 78 0 chr4 120264082 120264159 -35365961 - L2b LINE L2 -1 3374 3292 5 1502 210 182 0 43 chr4 120264167 120264213 -35365907 - L3 LINE CR1 -3185 1304 1261 5 1502 271 348 9 23 chr4 120264284 120264592 -35365528 + C-rich Low_complexity Low_complexity 1 303 0 5 1502 914 179 99 16 chr4 120264691 120264873 -35365247 + B3 SINE B2 5 201 -15 5 1502 870 153 14 7 chr4 120264873 120265018 -35365102 + B1_Mus2 SINE Alu 1 146 -1 5 1502 240 86 0 0 chr4 120265215 120265250 -35364870 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1502 592 224 21 63 chr4 120265250 120265393 -35364727 - B1F SINE Alu -10 139 3 5 1502 780 32 0 0 chr4 120265479 120265572 -35364548 - B1_Mm SINE Alu 0 147 55 5 1502 311 383 47 30 chr4 120265631 120265865 -35364255 - L1M5 LINE L1 -439 5685 5448 5 1502 955 179 9 80 chr4 120265968 120266180 -35363940 + B3A SINE B2 1 197 -1 5 1502 709 229 29 0 chr4 120266181 120266321 -35363799 - B1_Mur2 SINE Alu -5 144 1 5 1502 406 214 0 0 chr4 120266351 120266421 -35363699 + ID4_ SINE ID 4 73 -10 5 1502 661 50 0 39 chr4 120266421 120266525 -35363595 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 5 1502 633 309 33 37 chr4 120266585 120266800 -35363320 - MTEa LTR MaLR -3 376 163 5 1502 635 117 10 0 chr4 120266882 120266985 -35363135 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1502 482 259 151 77 chr4 120267011 120267270 -35362850 - B4A SINE B4 -14 278 1 5 1502 228 338 69 3 chr4 120267861 120268004 -35362116 - MIR SINE MIR -46 222 61 5 1502 1152 184 5 43 chr4 120268128 120268338 -35361782 + B3 SINE B2 1 202 -14 5 1502 2305 79 33 62 chr4 120268745 120269082 -35361038 - ORR1A2 LTR MaLR 0 327 1 5 1502 374 168 0 29 chr4 120269084 120269188 -35360932 + T-rich Low_complexity Low_complexity 1 101 0 5 1502 1244 41 0 0 chr4 120269211 120269356 -35360764 - B1_Mm SINE Alu 0 147 3 5 1502 1161 75 0 0 chr4 120269358 120269504 -35360616 - B1_Mm SINE Alu 0 147 2 5 1502 604 277 43 93 chr4 120269619 120269898 -35360222 + ORSL DNA Tip100 2 266 -9 5 1502 771 266 0 60 chr4 120269900 120270071 -35360049 + B3 SINE B2 1 167 -49 5 1502 414 0 0 0 chr4 120270071 120270117 -35360003 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1502 771 266 0 60 chr4 120270117 120270145 -35359975 + B3 SINE B2 168 188 -28 5 1502 329 119 0 33 chr4 120270145 120270206 -35359914 + GA-rich Low_complexity Low_complexity 2 60 0 5 1502 524 250 9 0 chr4 120270876 120270984 -35359136 + PB1D10 SINE Alu 6 114 -3 5 1502 614 49 12 0 chr4 120270985 120271067 -35359053 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 5 1502 317 270 111 0 chr4 120271069 120271195 -35358925 - Arthur1 DNA Tip100 -305 3642 3503 5 1502 232 214 35 18 chr4 120271202 120271259 -35358861 + GA-rich Low_complexity Low_complexity 4 61 0 5 1502 309 303 73 33 chr4 120271288 120271438 -35358682 + MLT1H LTR MaLR 26 181 -368 5 1502 867 318 137 32 chr4 120271800 120272362 -35357758 - Arthur1 DNA Tip100 -95 3852 3232 5 1502 348 267 83 64 chr4 120272483 120272639 -35357481 - B4A SINE B4 -130 162 4 5 1502 272 216 37 64 chr4 120272640 120272749 -35357371 - Arthur1 DNA Tip100 -818 3129 3024 5 1502 1546 27 38 0 chr4 120272755 120272940 -35357180 - B2_Mm1a SINE B2 -1 192 1 5 1502 1123 63 28 0 chr4 120272944 120273086 -35357034 - B1_Mus2 SINE Alu 0 147 2 5 1502 1273 87 12 0 chr4 120273091 120273263 -35356857 - B2_Mm1t SINE B2 -19 174 1 5 1502 419 239 51 34 chr4 120273331 120273448 -35356672 + RSINE1 SINE B4 23 141 -24 5 1502 347 60 20 0 chr4 120273448 120273498 -35356622 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1502 257 75 25 0 chr4 120273547 120273587 -35356533 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1502 1281 27 0 0 chr4 120273614 120273760 -35356360 + B1_Mm SINE Alu 2 147 0 5 1502 594 239 110 27 chr4 120273796 120273942 -35356178 + ID_B1 SINE B4 65 222 -2 5 1502 337 362 36 0 chr4 120273822 120273960 -35356160 + B1F SINE Alu 6 148 -1 5 1502 1055 255 17 4 chr4 120274045 120274281 -35355839 + B4A SINE B4 3 241 -51 5 1502 209 143 206 0 chr4 120274287 120274413 -35355707 + (GGCTG)n Simple_repeat Simple_repeat 4 155 0 5 1502 617 239 27 109 chr4 120274443 120274626 -35355494 + B4A SINE B4 1 168 -124 5 1502 499 66 13 13 chr4 120274723 120274800 -35355320 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1502 306 0 0 0 chr4 120274908 120274942 -35355178 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1502 269 245 122 41 chr4 120275952 120276050 -35354070 - PB1D10 SINE Alu -11 106 1 5 1502 182 263 0 0 chr4 120276116 120276154 -35353966 + L2b LINE L2 3237 3274 -101 5 1502 465 19 0 0 chr4 120276315 120276369 -35353751 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1502 3310 46 5 0 chr4 120276387 120276781 -35353339 + MTA_Mm LTR MaLR 1 396 0 5 1502 683 167 290 0 chr4 120276967 120277129 -35352991 - B3 SINE B2 -7 209 1 5 1502 450 53 0 0 chr4 120277711 120277768 -35352352 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1502 1072 248 9 0 chr4 120277775 120278005 -35352115 + MT2A LTR ERVL 7 238 -295 5 1502 250 209 198 0 chr4 120278019 120278105 -35352015 + MT2A LTR ERVL 431 533 0 5 1502 236 216 64 64 chr4 120278428 120278522 -35351598 + MIRc SINE MIR 54 147 -121 6 1502 1033 219 9 31 chr4 120278548 120278774 -35351346 + ID_B1 SINE B4 3 223 -1 6 1502 897 247 76 28 chr4 120279121 120279371 -35350749 + B4 SINE B4 3 264 -28 6 1502 969 70 0 0 chr4 120279462 120279605 -35350515 + (TCCC)n Simple_repeat Simple_repeat 4 146 0 6 1502 302 333 27 0 chr4 120279719 120279830 -35350290 + RMER20B LTR ERVK 250 363 -264 6 1502 402 127 0 0 chr4 120279948 120280019 -35350101 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1502 258 159 43 0 chr4 120280395 120280464 -35349656 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 6 1502 436 89 25 0 chr4 120280480 120280559 -35349561 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1502 377 270 113 39 chr4 120280629 120280828 -35349292 - L1MC2 LINE L1 -223 6121 5904 6 1502 1400 256 27 38 chr4 120280828 120281201 -35348919 + ORR1D2 LTR MaLR 1 369 -1 6 1502 377 270 113 39 chr4 120281201 120281232 -35348888 - L1MC2 LINE L1 -441 5903 5874 6 1502 863 185 0 0 chr4 120281561 120281696 -35348424 - B1_Mur1 SINE Alu -1 148 14 6 1502 200 34 0 33 chr4 120281696 120281726 -35348394 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1502 226 291 78 130 chr4 120281729 120281763 -35348357 + YREP_Mm Unknown Unknown 151 188 -1624 6 1502 392 299 86 21 chr4 120281763 120281777 -35348343 - B1F SINE Alu 0 149 138 6 1502 1199 55 7 7 chr4 120281777 120281924 -35348196 - B1_Mus1 SINE Alu 0 148 2 6 1502 226 291 78 130 chr4 120281924 120282029 -35348091 + YREP_Mm Unknown Unknown 189 296 -1516 6 1502 392 299 86 21 chr4 120282029 120282049 -35348071 - B1F SINE Alu -12 137 1 6 1502 297 169 0 0 chr4 120283110 120283169 -35346951 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1502 1003 141 0 20 chr4 120283177 120283329 -35346791 - B1_Mur4 SINE Alu -1 149 1 6 1502 549 243 189 13 chr4 120283507 120283745 -35346375 + RMER15 LTR ERVL 296 575 0 6 1502 241 302 153 71 chr4 120283751 120283947 -35346173 + MLT1J LTR MaLR 18 229 -283 6 1502 199 222 111 0 chr4 120284099 120284162 -35345958 + L2a LINE L2 3357 3426 0 6 1502 241 296 57 32 chr4 120284283 120284440 -35345680 - L1M5 LINE L1 -219 5905 5745 6 1502 393 149 0 0 chr4 120284734 120284801 -35345319 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1502 316 339 35 27 chr4 120284804 120284992 -35345128 + MIRb SINE MIR 9 200 -68 6 1502 747 212 51 7 chr4 120285532 120285670 -35344450 + B1_Mur1 SINE Alu 5 148 -1 6 1502 387 185 41 47 chr4 120285709 120285968 -35344152 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 6 1502 368 212 39 45 chr4 120285919 120286097 -35344023 + (CATA)n Simple_repeat Simple_repeat 3 179 0 6 1502 441 54 0 0 chr4 120286117 120286173 -35343947 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1502 417 271 52 0 chr4 120287624 120287720 -35342400 + ID_B1 SINE B4 4 104 -120 6 1502 207 0 0 0 chr4 120287725 120287748 -35342372 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1502 288 0 0 0 chr4 120287748 120287779 -35342341 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1502 373 328 50 21 chr4 120288690 120288830 -35341290 + RSINE1 SINE B4 5 148 -17 6 1502 30 0 0 0 chr4 120288838 120288868 -35341252 + AT_rich Low_complexity Low_complexity 1 30 0 6 1502 380 228 38 47 chr4 120288878 120288984 -35341136 + PB1 SINE Alu 3 107 -20 6 1502 867 110 73 7 chr4 120289770 120289907 -35340213 - B1_Mus1 SINE Alu -1 147 2 6 1502 1150 49 28 0 chr4 120289974 120290116 -35340004 + B1_Mus2 SINE Alu 2 147 0 6 1502 518 354 0 0 chr4 120290152 120290313 -35339807 + B3A SINE B2 27 187 -11 6 1502 498 46 0 0 chr4 120290574 120290639 -35339481 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1502 227 118 0 0 chr4 120291022 120291056 -35339064 - MIRc SINE MIR -121 147 114 6 1502 1201 148 69 37 chr4 120291614 120291831 -35338289 + URR1A DNA MER1_type 3 226 0 6 1502 183 245 61 0 chr4 120291864 120291913 -35338207 + L2 LINE L2 1490 1541 -1878 6 1502 354 225 155 0 chr4 120293418 120293516 -35336604 + PB1D10 SINE Alu 1 122 -5 6 1502 204 216 0 0 chr4 120293516 120293567 -35336553 + (CATA)n Simple_repeat Simple_repeat 1 51 0 6 1502 313 259 136 61 chr4 120293567 120293781 -35336339 - RLTR21 LTR ERVK -266 1306 1077 6 1502 194 268 0 0 chr4 120293905 120293946 -35336174 - MIRc SINE MIR -113 155 115 6 1502 424 318 48 0 chr4 120294245 120294371 -35335749 + ID_B1 SINE B4 84 215 -9 6 1502 297 167 0 0 chr4 120294371 120294425 -35335695 + (CAG)n Simple_repeat Simple_repeat 3 56 0 6 1502 618 231 58 93 chr4 120295282 120295487 -35334633 - B3A SINE B2 0 198 1 6 1502 1395 60 11 16 chr4 120295948 120296133 -35333987 + B2_Mm1a SINE B2 2 185 -8 6 1502 294 123 0 0 chr4 120296234 120296291 -35333829 + (CAAAC)n Simple_repeat Simple_repeat 2 58 0 6 1502 718 232 109 16 chr4 120296361 120296545 -35333575 - ID_B1 SINE B4 -23 201 1 6 1502 291 205 95 12 chr4 120296635 120296719 -35333401 + PB1D9 SINE Alu 30 120 0 6 1502 562 243 9 0 chr4 120296960 120297067 -35333053 + RSINE1 SINE B4 7 114 -51 6 1502 477 0 0 0 chr4 120297067 120297120 -35333000 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1502 22 70 0 0 chr4 120297120 120297163 -35332957 + AT_rich Low_complexity Low_complexity 1 43 0 6 1502 448 216 237 35 chr4 120297166 120297339 -35332781 - B3 SINE B2 -8 208 1 6 1502 1182 88 0 0 chr4 120297355 120297503 -35332617 - B1_Mus1 SINE Alu 0 148 1 6 1502 22 35 0 0 chr4 120297516 120297545 -35332575 + AT_rich Low_complexity Low_complexity 1 29 0 6 1502 422 262 83 55 chr4 120297666 120297775 -35332345 - PB1D10 SINE Alu -5 112 1 6 1502 513 237 11 0 chr4 120297699 120297792 -35332328 - ID_B1 SINE B4 -67 157 64 6 1502 235 347 31 31 chr4 120297856 120297984 -35332136 + MIR SINE MIR 77 204 -58 6 1502 271 324 88 0 chr4 120297984 120298120 -35332000 + B1F1 SINE Alu 1 148 -1 6 1502 923 224 66 25 chr4 120298202 120298399 -35331721 - B3 SINE B2 -10 206 2 6 1502 684 215 27 14 chr4 120298409 120298555 -35331565 - B1_Mur1 SINE Alu -1 148 1 6 1502 3019 58 42 3 chr4 120299016 120299397 -35330723 - MTA_Mm LTR MaLR 0 396 1 6 1502 623 262 35 28 chr4 120299463 120299608 -35330512 + RSINE1 SINE B4 20 165 0 6 1502 372 135 0 0 chr4 120299608 120299682 -35330438 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1502 384 167 0 0 chr4 120299816 120299888 -35330232 + CT-rich Low_complexity Low_complexity 2 73 0 6 1502 1349 275 77 34 chr4 120300205 120300686 -35329434 + L1MD3 LINE L1 7161 7665 -330 6 1502 506 248 0 9 chr4 120300686 120300792 -35329328 + PB1D7 SINE Alu 2 106 -14 6 1502 1349 275 77 34 chr4 120300792 120300894 -35329226 + L1MD3 LINE L1 7666 7769 -226 6 1502 576 119 0 0 chr4 120300916 120301025 -35329095 + (TC)n Simple_repeat Simple_repeat 2 110 0 6 1502 270 0 0 0 chr4 120301025 120301055 -35329065 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1502 776 212 36 36 chr4 120301122 120301318 -35328802 - B3 SINE B2 -1 215 20 6 1502 812 274 30 5 chr4 120301402 120301600 -35328520 - ID_B1 SINE B4 -20 204 2 6 1502 418 201 14 76 chr4 120301658 120301805 -35328315 + B3 SINE B2 1 210 -6 6 1502 719 221 67 0 chr4 120301932 120302081 -35328039 + RSINE1 SINE B4 7 165 0 6 1502 200 304 0 0 chr4 120302081 120302150 -35327970 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1502 635 248 26 26 chr4 120302397 120302536 -35327584 + B3 SINE B2 27 166 -50 6 1502 192 125 0 0 chr4 120302536 120302568 -35327552 + (CATA)n Simple_repeat Simple_repeat 3 34 0 6 1502 635 248 26 26 chr4 120302568 120302581 -35327539 + B3 SINE B2 167 179 -37 6 1502 328 283 35 144 chr4 120302592 120302794 -35327326 - L1MD3 LINE L1 -162 7833 7654 6 1502 258 135 0 19 chr4 120302882 120302935 -35327185 - L1MA6 LINE L1 -123 6177 6126 6 1502 294 261 65 0 chr4 120302987 120303079 -35327041 - L1MA6 LINE L1 -172 6128 6031 6 1502 281 118 20 0 chr4 120303143 120303194 -35326926 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 6 1502 481 214 87 104 chr4 120303195 120303378 -35326742 + B3A SINE B2 1 180 -18 6 1502 265 317 0 0 chr4 120303382 120303464 -35326656 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1502 369 244 165 0 chr4 120303501 120303616 -35326504 - ID_B1 SINE B4 -10 214 81 6 1502 450 0 0 0 chr4 120303717 120303767 -35326353 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1502 632 261 186 4 chr4 120303777 120304019 -35326101 - B4A SINE B4 -6 286 1 6 1502 369 0 0 0 chr4 120304037 120304078 -35326042 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 6 1502 899 157 8 0 chr4 120304078 120304212 -35325908 - B1_Mur2 SINE Alu -14 135 1 6 1502 352 288 128 12 chr4 120304693 120304865 -35325255 + LTR50 LTR ERVL 15 206 -589 6 1502 249 303 161 26 chr4 120304977 120305135 -35324985 + LTR33A LTR ERVL 295 469 -51 6 1502 274 265 126 10 chr4 120305135 120305238 -35324882 + PB1D10 SINE Alu 1 115 -2 6 1502 249 303 161 26 chr4 120305238 120305272 -35324848 + LTR33A LTR ERVL 470 513 -7 6 1502 414 0 0 0 chr4 120305854 120305900 -35324220 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1502 1113 236 10 0 chr4 120306049 120306257 -35323863 + B3 SINE B2 7 216 0 6 1502 464 240 75 57 chr4 120306356 120306515 -35323605 + RSINE1 SINE B4 4 165 0 6 1502 685 133 0 55 chr4 120306604 120306731 -35323389 + B1_Mur4 SINE Alu 26 145 -5 6 1502 440 279 91 86 chr4 120306990 120307130 -35322990 + ID_B1 SINE B4 4 156 -68 6 1502 1242 124 0 20 chr4 120307130 120307328 -35322792 + B2_Mm2 SINE B2 2 195 0 6 1502 440 279 91 86 chr4 120307328 120307407 -35322713 + ID_B1 SINE B4 157 224 0 6 1502 227 164 269 0 chr4 120307854 120307921 -35322199 + MIRb SINE MIR 103 187 -81 6 1502 1156 164 68 0 chr4 120308641 120308848 -35321272 - URR1A DNA MER1_type -5 221 1 6 1502 469 192 137 65 chr4 120309618 120309757 -35320363 - B1F1 SINE Alu 0 149 1 7 1502 351 191 44 0 chr4 120309806 120309874 -35320246 - PB1D10 SINE Alu 0 117 47 7 1502 1190 154 38 19 chr4 120310056 120310268 -35319852 - B3 SINE B2 0 216 1 7 1502 396 289 0 0 chr4 120311492 120311589 -35318531 + PB1D10 SINE Alu 21 117 0 7 1502 3344 62 2 0 chr4 120311599 120312005 -35318115 + MTB_Mm LTR MaLR 1 407 0 7 1502 219 323 83 31 chr4 120312123 120312219 -35317901 + MIRm SINE MIR 44 144 -132 7 1502 333 0 0 0 chr4 120312240 120312277 -35317843 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 7 1502 374 228 52 24 chr4 120312284 120312378 -35317742 - B1F SINE Alu -14 106 1 7 1502 282 299 0 15 chr4 120312385 120312453 -35317667 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 7 1502 425 289 26 17 chr4 120312459 120312575 -35317545 - PB1D10 SINE Alu 0 117 1 7 1502 520 324 48 21 chr4 120312629 120312818 -35317302 + MIRb SINE MIR 66 259 -9 7 1502 242 327 138 18 chr4 120312936 120313045 -35317075 + L3 LINE CR1 3786 3907 -582 7 1502 277 271 66 13 chr4 120313075 120313303 -35316817 + RMER17D2 LTR ERVK 227 466 -343 7 1502 360 0 0 0 chr4 120313315 120313355 -35316765 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1502 456 233 84 37 chr4 120313355 120313452 -35316668 - B1_Mur2 SINE Alu -16 104 1 7 1502 232 286 128 37 chr4 120313452 120313486 -35316634 - MT2B LTR ERVL -437 164 121 7 1502 1063 212 14 5 chr4 120313680 120313888 -35316232 + ID_B1 SINE B4 5 214 -10 7 1502 359 250 0 0 chr4 120313971 120314043 -35316077 - B1_Mur1 SINE Alu 0 149 78 7 1502 1124 147 54 29 chr4 120314035 120314239 -35315881 - MTD LTR MaLR -209 210 2 7 1502 2704 131 2 0 chr4 120315037 120315435 -35314685 - MTC LTR MaLR 0 421 23 7 1502 388 183 53 37 chr4 120315433 120315531 -35314589 - B4 SINE B4 -189 103 3 7 1502 300 172 0 0 chr4 120315553 120315611 -35314509 + CT-rich Low_complexity Low_complexity 3 60 0 7 1502 563 207 43 35 chr4 120315863 120315978 -35314142 + B1F2 SINE Alu 34 149 0 7 1502 267 54 0 0 chr4 120316148 120316185 -35313935 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 7 1502 682 266 80 116 chr4 120316215 120316517 -35313603 - B4A SINE B4 0 292 2 7 1502 906 284 90 16 chr4 120316528 120316896 -35313224 - L1MA8 LINE L1 -359 5932 5538 7 1502 820 211 0 0 chr4 120317107 120317254 -35312866 + B1_Mur1 SINE Alu 3 149 0 7 1502 350 282 21 78 chr4 120318577 120318618 -35311502 - MIRb SINE MIR -112 156 121 7 1502 1114 215 146 30 chr4 120318618 120318953 -35311167 - ORR1D1 LTR MaLR 0 374 1 7 1502 350 282 21 78 chr4 120318953 120319053 -35311067 - MIRb SINE MIR -148 120 23 7 1502 264 313 37 74 chr4 120319071 120319233 -35310887 + YREP_Mm Unknown Unknown 141 296 -1516 7 1502 460 328 39 0 chr4 120319114 120319242 -35310878 - B1F2 SINE Alu -5 144 12 7 1502 193 340 38 0 chr4 120319612 120319665 -35310455 - L2a LINE L2 -341 3085 3031 7 1502 979 193 6 6 chr4 120319666 120319839 -35310281 + B3 SINE B2 1 172 -44 7 1502 198 0 0 0 chr4 120319839 120319861 -35310259 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1502 201 74 0 0 chr4 120319869 120319896 -35310224 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1502 618 203 45 90 chr4 120319896 120319913 -35310207 + B2_Mm2 SINE B2 173 191 -4 7 1502 198 299 106 35 chr4 120319976 120320146 -35309974 - L2a LINE L2 -883 2536 2355 7 1502 210 37 0 0 chr4 120320927 120320954 -35309166 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1502 263 329 0 0 chr4 120321051 120321136 -35308984 + (TTCA)n Simple_repeat Simple_repeat 1 85 0 7 1502 520 259 9 0 chr4 120321578 120321686 -35308434 - PB1D7 SINE Alu 0 120 12 7 1502 299 333 0 75 chr4 120321599 120321706 -35308414 - ID_B1 SINE B4 -48 176 78 7 1502 233 300 14 0 chr4 120321710 120321780 -35308340 + CT-rich Low_complexity Low_complexity 2 72 0 7 1502 243 228 150 21 chr4 120323002 120323098 -35307022 - MIRm SINE MIR -83 179 78 7 1502 303 297 342 6 chr4 120323176 120323343 -35306777 - MIRb SINE MIR -2 266 44 7 1502 322 242 65 21 chr4 120323506 120323599 -35306521 + PB1D10 SINE Alu 21 117 0 7 1502 252 286 0 41 chr4 120323607 120323680 -35306440 + ID4 SINE ID 3 72 -11 7 187 2658 120 35 2 chr4 120323812 120324214 -35305906 + MTC LTR MaLR 5 419 -2 7 1503 949 213 80 0 chr4 120324301 120324319 -35305801 - B3 SINE B2 0 216 194 7 1503 282 29 0 0 chr4 120324319 120324354 -35305766 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1503 949 213 80 0 chr4 120324354 120324523 -35305597 - B3 SINE B2 -23 193 15 7 1503 233 287 31 145 chr4 120324505 120324664 -35305456 + MER74A LTR ERVL 193 333 -225 7 1503 517 276 128 20 chr4 120326779 120326982 -35303138 + MIR SINE MIR 3 227 -35 7 1503 1264 269 68 26 chr4 120327345 120327696 -35302424 - MTEb LTR MaLR -10 369 4 7 1503 349 321 75 39 chr4 120327729 120327924 -35302196 - MLT1H LTR MaLR -3 546 287 7 1503 292 316 20 50 chr4 120328048 120328148 -35301972 - MIRb SINE MIR -74 194 98 7 1503 1007 131 7 0 chr4 120328177 120328322 -35301798 + B1_Mus1 SINE Alu 3 148 0 7 1503 22 35 0 0 chr4 120328329 120328358 -35301762 + AT_rich Low_complexity Low_complexity 1 29 0 7 1503 523 244 62 62 chr4 120328369 120328548 -35301572 - B3A SINE B2 -18 180 2 7 1503 350 259 52 35 chr4 120330371 120330487 -35299633 + MER2 DNA MER2_type 95 212 -133 7 1503 813 217 0 0 chr4 120330656 120330794 -35299326 - B1_Mur2 SINE Alu -10 139 2 7 1503 1337 179 157 15 chr4 120331364 120331688 -35298432 - ORR1D1 LTR MaLR -4 370 1 7 1503 799 199 11 96 chr4 120331737 120331915 -35298205 - ID_B1 SINE B4 0 224 62 7 1503 875 174 147 76 chr4 120332125 120332336 -35297784 - URR1A DNA MER1_type 0 226 1 7 1503 244 304 172 35 chr4 120332373 120332489 -35297631 + MIR3 SINE MIR 14 145 -63 7 1503 471 290 31 2 chr4 120332906 120333056 -35297064 + MIR SINE MIR 117 263 -5 7 1503 206 235 20 0 chr4 120333060 120333111 -35297009 + CT-rich Low_complexity Low_complexity 2 53 0 7 1503 531 258 34 6 chr4 120333252 120333428 -35296692 - L1MB5 LINE L1 -7 6167 5973 7 1503 726 117 15 66 chr4 120333484 120333621 -35296499 - B1_Mur3 SINE Alu -10 139 10 7 1503 427 204 17 61 chr4 120333623 120333738 -35296382 - PB1D10 SINE Alu 0 117 8 7 1503 238 333 43 22 chr4 120333911 120334049 -35296071 - L2a LINE L2 -76 3350 3210 7 1503 849 306 84 22 chr4 120334090 120334448 -35295672 - MLT1F1 LTR MaLR 0 569 190 7 1503 424 287 102 14 chr4 120334450 120334598 -35295522 + ID_B1 SINE B4 80 246 -46 7 1503 489 282 131 11 chr4 120334633 120334829 -35295291 - MLT1F1 LTR MaLR -339 221 1 7 1503 184 258 268 0 chr4 120335021 120335118 -35295002 + MIRc SINE MIR 37 159 -109 7 1503 641 268 80 23 chr4 120335231 120335407 -35294713 + B3 SINE B2 1 186 -30 7 1503 522 224 25 17 chr4 120335525 120335643 -35294477 - PB1D7 SINE Alu 0 120 2 7 1503 629 303 6 13 chr4 120335966 120335986 -35294134 - RSINE1 SINE B4 -4 161 142 7 1503 519 17 0 0 chr4 120335986 120336046 -35294074 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1503 629 303 6 13 chr4 120336046 120336182 -35293938 - RSINE1 SINE B4 -24 141 6 7 1503 804 272 5 76 chr4 120336200 120336337 -35293783 - B4A SINE B4 -64 228 96 7 1503 1211 70 111 0 chr4 120336337 120336509 -35293611 - B2_Mm1a SINE B2 -1 192 2 7 1503 804 272 5 76 chr4 120336509 120336521 -35293599 - B4A SINE B4 -197 95 90 7 1503 4005 53 4 4 chr4 120336521 120337012 -35293108 - L1Md_F2 LINE L1 0 6582 6092 7 1503 804 272 5 76 chr4 120337012 120337084 -35293036 - B4A SINE B4 -203 89 22 7 1503 831 270 5 15 chr4 120337163 120337362 -35292758 - B3A SINE B2 -1 197 1 7 1503 315 0 0 0 chr4 120337390 120337425 -35292695 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1503 315 244 35 35 chr4 120337538 120337623 -35292497 + PB1D10 SINE Alu 20 104 -13 7 1503 261 0 0 0 chr4 120337624 120337653 -35292467 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1503 206 355 36 62 chr4 120337783 120337931 -35292189 - MIR SINE MIR -55 153 18 7 1503 226 255 6 28 chr4 120338107 120338179 -35291941 + MIR SINE MIR 104 171 -91 7 1503 387 0 0 0 chr4 120338353 120338396 -35291724 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1503 198 405 0 0 chr4 120338505 120338589 -35291531 - L2b LINE L2 0 3375 3292 7 1503 215 226 16 16 chr4 120339718 120339781 -35290339 + (CCG)n Simple_repeat Simple_repeat 2 64 0 7 1503 306 0 0 0 chr4 120340805 120340839 -35289281 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1503 210 312 19 97 chr4 120341815 120341918 -35288202 + MIRc SINE MIR 87 181 -87 7 1503 393 240 137 116 chr4 120342015 120342161 -35287959 + B1F SINE Alu 1 149 0 7 1503 235 241 34 112 chr4 120342758 120342847 -35287273 + PB1D9 SINE Alu 17 98 -22 7 1503 432 227 0 106 chr4 120342769 120342886 -35287234 + ID_B1 SINE B4 108 213 -11 7 1503 423 0 0 0 chr4 120342886 120342933 -35287187 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 7 1503 724 204 74 6 chr4 120342938 120343101 -35287019 + B3A SINE B2 2 175 -23 7 1503 245 339 53 82 chr4 120343346 120343552 -35286568 - LTR16A LTR ERVL -207 244 45 7 1503 954 212 64 0 chr4 120344382 120344585 -35285535 + B3 SINE B2 1 216 0 7 1503 711 223 9 14 chr4 120344798 120344961 -35285159 + ID_B1 SINE B4 86 247 -45 7 1503 301 310 35 0 chr4 120345317 120345430 -35284690 - PB1D10 SINE Alu 0 117 1 7 1503 556 284 77 0 chr4 120345430 120345502 -35284618 - ID SINE ID -139 85 1 7 1503 561 226 36 21 chr4 120345600 120345740 -35284380 - B1F1 SINE Alu -2 147 6 7 1503 231 273 33 98 chr4 120345633 120345755 -35284365 - MT2B LTR ERVL -333 268 155 7 1503 332 278 45 18 chr4 120346121 120346231 -35283889 - L1M LINE L1 -747 5377 5265 7 1503 332 261 47 40 chr4 120346293 120346441 -35283679 - B1F1 SINE Alu 0 149 1 8 1503 892 238 9 53 chr4 120346480 120346706 -35283414 + B3 SINE B2 1 216 0 8 1503 405 0 0 0 chr4 120346819 120346864 -35283256 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1503 435 19 0 0 chr4 120346864 120346916 -35283204 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1503 429 303 112 17 chr4 120346960 120347138 -35282982 - B4A SINE B4 -95 197 3 8 1503 190 106 43 0 chr4 120347423 120347470 -35282650 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 8 1503 198 0 0 0 chr4 120347901 120347923 -35282197 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1503 311 241 0 0 chr4 120348000 120348058 -35282062 + RSINE1 SINE B4 3 60 -105 8 1503 411 21 0 0 chr4 120348074 120348122 -35281998 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1503 342 0 0 0 chr4 120348122 120348159 -35281961 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1503 31 0 0 0 chr4 120348176 120348207 -35281913 + AT_rich Low_complexity Low_complexity 1 31 0 8 1503 455 288 9 0 chr4 120348232 120348343 -35281777 + PB1D10 SINE Alu 2 113 -4 8 1503 196 335 5 48 chr4 120348442 120348551 -35281569 - MIRb SINE MIR -51 157 59 8 1503 753 232 7 0 chr4 120348578 120348720 -35281400 + B1F1 SINE Alu 1 143 -6 8 1503 948 256 32 14 chr4 120348729 120348947 -35281173 + ID_B1 SINE B4 1 222 -2 8 1503 912 155 7 7 chr4 120348950 120349099 -35281021 + B1_Mur4 SINE Alu 1 149 -1 8 1503 186 141 42 14 chr4 120349100 120349172 -35280948 + A-rich Low_complexity Low_complexity 4 77 0 8 1503 202 216 0 0 chr4 120349247 120349298 -35280822 + T-rich Low_complexity Low_complexity 1 51 0 8 1503 1245 48 0 0 chr4 120349300 120349446 -35280674 - B1_Mus1 SINE Alu 0 148 3 8 1503 1443 57 0 0 chr4 120349902 120350398 -35279722 + (TTCC)n Simple_repeat Simple_repeat 1 496 0 8 1503 735 236 7 0 chr4 120350403 120350543 -35279577 - B1_Mur2 SINE Alu -5 144 4 8 1503 1232 48 0 0 chr4 120351424 120351571 -35278549 - B1_Mm SINE Alu 0 147 1 8 1503 1061 220 53 162 chr4 120351571 120351984 -35278136 - MTE2a LTR MaLR -6 373 6 8 1503 977 255 64 20 chr4 120352542 120352833 -35277287 - ORR1D2 LTR MaLR 0 370 13 8 1503 192 77 0 0 chr4 120352903 120352929 -35277191 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1503 716 253 53 0 chr4 120353048 120353198 -35276922 + RSINE1 SINE B4 3 160 -5 8 1503 937 43 6 146 chr4 120353209 120353374 -35276746 + B1_Mus1 SINE Alu 7 148 0 8 1503 507 73 0 0 chr4 120353375 120353443 -35276677 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 8 1503 1365 57 0 0 chr4 120353466 120353641 -35276479 + (GAGAA)n Simple_repeat Simple_repeat 1 175 0 8 1503 216 0 0 0 chr4 120353854 120353878 -35276242 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1503 241 315 93 16 chr4 120353881 120354010 -35276110 + MIRc SINE MIR 64 202 -66 8 1503 597 282 93 66 chr4 120355171 120355429 -35274691 + B4A SINE B4 1 265 -27 8 1503 446 49 0 16 chr4 120355429 120355491 -35274629 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1503 424 277 71 0 chr4 120355498 120355610 -35274510 + RSINE1 SINE B4 18 137 -28 8 1503 1781 132 78 21 chr4 120355767 120356100 -35274020 - ORR1B2 LTR MaLR -11 356 5 8 1503 302 269 111 0 chr4 120356876 120356984 -35273136 - ID_B1 SINE B4 -1 223 104 8 1503 426 205 91 0 chr4 120356893 120356997 -35273123 - B1_Mur1 SINE Alu -28 120 6 8 1503 312 284 171 43 chr4 120357006 120357027 -35273093 - B3A SINE B2 -4 194 175 8 1503 300 27 0 0 chr4 120357027 120357064 -35273056 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1503 312 284 171 43 chr4 120357064 120357096 -35273024 - B3A SINE B2 -24 174 145 8 1503 1616 156 48 74 chr4 120357096 120357392 -35272728 + RMER17C LTR ERVK 1 280 -130 8 1503 330 26 0 0 chr4 120357392 120357431 -35272689 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1503 1616 156 48 74 chr4 120357431 120357511 -35272609 + RMER17C LTR ERVK 281 367 -43 8 1503 1651 31 5 0 chr4 120357511 120357703 -35272417 - B2_Mm1t SINE B2 0 193 1 8 1503 1616 156 48 74 chr4 120357703 120357746 -35272374 + RMER17C LTR ERVK 368 408 -2 8 1503 312 284 171 43 chr4 120357746 120357831 -35272289 - B3A SINE B2 -54 144 37 8 1503 657 346 53 38 chr4 120358007 120358154 -35271966 + MLT1B LTR MaLR 23 173 -217 8 1503 1632 36 0 20 chr4 120358154 120358350 -35271770 + B2_Mm1a SINE B2 2 193 0 8 1503 657 346 53 38 chr4 120358350 120358409 -35271711 + MLT1B LTR MaLR 174 231 -159 8 1503 2061 141 123 28 chr4 120358409 120358767 -35271353 + ORR1B1 LTR MaLR 3 394 0 8 1503 657 346 53 38 chr4 120358767 120358901 -35271219 + MLT1B LTR MaLR 232 368 -22 8 1503 239 274 118 24 chr4 120358982 120359109 -35271011 + MamRep564 Unknown Unknown 69 207 -150 8 1503 278 272 94 95 chr4 120359346 120359476 -35270644 - MLT1A1 LTR MaLR -13 395 223 8 1503 572 291 12 12 chr4 120359730 120359897 -35270223 + MLT1B LTR MaLR 382 548 -1 8 1503 242 352 75 48 chr4 120360015 120360161 -35269959 + L2b LINE L2 3225 3374 -1 8 1503 187 356 21 32 chr4 120360160 120360253 -35269867 + L2 LINE L2 2673 2764 -655 8 1503 245 353 0 0 chr4 120360410 120360478 -35269642 - BC1_Mm scRNA scRNA -83 69 2 8 1503 368 189 43 32 chr4 120360483 120360576 -35269544 - PB1D10 SINE Alu -7 110 17 8 1503 342 287 93 0 chr4 120360869 120360998 -35269122 - RSINE1 SINE B4 -13 152 12 8 1503 714 184 88 7 chr4 120361011 120361148 -35268972 - B1_Mur1 SINE Alu 0 149 2 8 1503 579 221 131 8 chr4 120361187 120361327 -35268793 - ID_B1 SINE B4 -1 223 73 8 1503 594 187 0 0 chr4 120361327 120361477 -35268643 + (TG)n Simple_repeat Simple_repeat 2 151 0 8 1503 769 371 66 11 chr4 120361477 120362006 -35268114 + ERVL-B4-int LTR ERVL 3771 4328 -1386 8 1503 372 312 40 75 chr4 120362095 120362268 -35267852 - MLT1D LTR MaLR -1 504 332 8 1503 230 306 0 14 chr4 120362360 120362433 -35267687 + ID4_ SINE ID 1 72 -11 8 1503 279 208 0 0 chr4 120362544 120362597 -35267523 + PB1D10 SINE Alu 23 75 -42 8 1503 667 209 37 7 chr4 120362599 120362734 -35267386 + RSINE1 SINE B4 3 141 -24 8 1503 281 331 21 67 chr4 120362734 120362793 -35267327 + B2_Mm2 SINE B2 2 186 -9 8 1503 266 235 29 39 chr4 120363289 120363391 -35266729 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 8 1503 607 25 25 0 chr4 120363421 120363502 -35266618 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 8 1503 1217 124 0 0 chr4 120363545 120363577 -35266543 - B2_Mm1a SINE B2 0 193 162 8 1503 351 0 0 0 chr4 120363577 120363616 -35266504 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 8 1503 1217 124 0 0 chr4 120363616 120363776 -35266344 - B2_Mm1a SINE B2 -32 161 2 8 1503 587 319 73 10 chr4 120363776 120363978 -35266142 + MER2 DNA MER2_type 121 335 -10 8 1503 317 299 28 0 chr4 120363978 120364085 -35266035 + ERVL-B4-int LTR ERVL 5059 5168 -499 8 1503 968 225 33 23 chr4 120364085 120364299 -35265821 + B3 SINE B2 1 216 0 8 1503 2607 200 65 29 chr4 120364370 120364479 -35265641 + RMER1B Other Other 439 538 -528 8 1503 414 0 0 0 chr4 120364479 120364525 -35265595 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1503 351 0 0 0 chr4 120364525 120364563 -35265557 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1503 2607 200 65 29 chr4 120364563 120365049 -35265071 + RMER1B Other Other 539 1056 -10 8 1503 310 278 72 53 chr4 120365254 120365406 -35264714 + RMER5 LTR ERV1 1 155 -379 8 1503 586 294 101 58 chr4 120365406 120365751 -35264369 + ORR1E LTR MaLR 1 379 0 8 1503 465 326 85 45 chr4 120365764 120365916 -35264204 + ID_B1 SINE B4 2 169 -55 8 1503 970 111 218 37 chr4 120365916 120366104 -35264016 + URR1A DNA MER1_type 5 226 0 8 1503 465 326 85 45 chr4 120366104 120366150 -35263970 + ID_B1 SINE B4 170 208 -16 8 1503 233 207 35 28 chr4 120366162 120366306 -35263814 + GA-rich Low_complexity Low_complexity 1 145 0 8 1503 915 244 70 40 chr4 120366329 120366657 -35263463 + RMER5 LTR ERV1 187 524 -10 8 1503 642 230 21 82 chr4 120366806 120367000 -35263120 + B3A SINE B2 2 183 -15 8 1503 297 151 0 0 chr4 120367334 120367387 -35262733 + CT-rich Low_complexity Low_complexity 1 53 0 8 1503 262 250 13 40 chr4 120367414 120367489 -35262631 - ID4_ SINE ID -10 73 1 8 1503 279 197 0 16 chr4 120368102 120368164 -35261956 + PB1D7 SINE Alu 58 118 -2 8 1503 251 189 51 51 chr4 120368301 120368379 -35261741 + PB1D7 SINE Alu 43 120 0 8 1503 284 382 0 16 chr4 120368541 120368666 -35261454 + MLT1K LTR MaLR 450 572 -23 8 1503 327 301 87 13 chr4 120371496 120371725 -35258395 + L2 LINE L2 1901 2146 -1273 8 1503 531 209 19 0 chr4 120371802 120371907 -35258213 - B1F2 SINE Alu -11 138 32 8 1503 408 233 94 6 chr4 120372279 120372397 -35257723 - PB1D9 SINE Alu -18 132 11 8 1503 180 0 0 0 chr4 120373085 120373105 -35257015 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 8 1503 349 247 97 0 chr4 120374103 120374257 -35255863 - MER112 DNA MER1_type -3 258 90 8 1503 550 282 28 7 chr4 120374248 120374391 -35255729 - ID_B1 SINE B4 0 224 79 8 1503 332 328 10 24 chr4 120376237 120376372 -35253748 - MIR SINE MIR -49 219 88 8 1503 402 262 180 0 chr4 120376380 120376502 -35253618 + RSINE1 SINE B4 16 159 -6 8 1503 929 198 26 21 chr4 120376519 120376710 -35253410 + B2_Mm2 SINE B2 1 192 -3 8 1503 225 276 39 26 chr4 120376733 120376811 -35253309 - MIR SINE MIR -186 82 4 8 1503 567 338 49 0 chr4 120379406 120379610 -35250510 + MER20 DNA MER1_type 1 214 -5 8 1503 798 251 91 0 chr4 120380095 120380294 -35249826 - ID_B1 SINE B4 0 224 8 8 1503 249 366 11 0 chr4 120380365 120380458 -35249662 - MIR SINE MIR -97 165 72 8 1503 238 262 58 13 chr4 120380902 120380984 -35249136 + L2a LINE L2 3278 3413 -13 8 1503 417 293 52 17 chr4 120381110 120381285 -35248835 - MIR3 SINE MIR -20 188 27 8 1503 242 297 13 13 chr4 120386172 120386247 -35243873 + L2b LINE L2 3298 3372 -3 8 1503 669 327 57 28 chr4 120390495 120390778 -35239342 + B4A SINE B4 1 291 -1 8 1503 209 205 0 0 chr4 120390788 120390827 -35239293 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1503 638 186 18 0 chr4 120391526 120391639 -35238481 - PB1D10 SINE Alu -1 116 2 8 1503 198 0 0 0 chr4 120391697 120391719 -35238401 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1503 215 306 137 24 chr4 120391744 120391868 -35238252 + MIRm SINE MIR 89 226 -50 8 1503 243 0 0 0 chr4 120392355 120392382 -35237738 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1503 250 289 92 0 chr4 120392466 120392542 -35237578 - ID4 SINE ID 0 83 1 9 1503 1905 171 23 132 chr4 120392549 120392980 -35237140 + ORR1C2 LTR MaLR 1 384 0 9 1503 403 313 6 81 chr4 120393001 120393175 -35236945 - B3A SINE B2 0 198 38 9 1503 910 244 30 15 chr4 120393175 120393375 -35236745 - B3 SINE B2 -13 203 1 9 1503 364 322 25 8 chr4 120393384 120393506 -35236614 - PB1 SINE Alu -3 124 1 9 1503 461 319 16 140 chr4 120393535 120393551 -35236569 - RSINE1 SINE B4 -1 164 149 9 1503 207 0 0 0 chr4 120393551 120393574 -35236546 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1503 461 319 16 140 chr4 120393574 120393696 -35236424 - RSINE1 SINE B4 -17 148 49 9 1503 306 87 0 0 chr4 120393696 120393742 -35236378 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1503 461 319 16 140 chr4 120393742 120393788 -35236332 - RSINE1 SINE B4 -117 48 3 9 1503 42 0 0 0 chr4 120393800 120393842 -35236278 + AT_rich Low_complexity Low_complexity 1 42 0 9 1503 235 330 115 10 chr4 120393853 120393957 -35236163 - PB1D10 SINE Alu -1 116 2 9 1503 222 341 132 22 chr4 120394089 120394317 -35235803 + L2 LINE L2 2366 2618 -801 9 1503 215 224 0 0 chr4 120394489 120394538 -35235582 + (CTTG)n Simple_repeat Simple_repeat 3 51 0 9 1503 517 239 51 0 chr4 120394853 120394970 -35235150 + B1F SINE Alu 24 146 -3 9 1503 249 302 112 0 chr4 120395085 120395197 -35234923 - MIRc SINE MIR -94 182 55 9 1503 331 289 24 0 chr4 120395740 120395823 -35234297 + ID_B1 SINE B4 91 175 -49 9 1503 328 282 38 28 chr4 120395823 120395846 -35234274 + PB1D10 SINE Alu 10 116 -1 9 1503 185 314 0 0 chr4 120395850 120395901 -35234219 - MER5A DNA MER1_type -58 131 81 9 1503 496 246 9 17 chr4 120395936 120396052 -35234068 - PB1D10 SINE Alu -1 116 2 9 1503 820 89 219 43 chr4 120397521 120397685 -35232435 + B2_Mm2 SINE B2 1 193 -2 9 1503 217 279 31 47 chr4 120398926 120398990 -35231130 + MIR3 SINE MIR 116 178 -30 9 1503 502 244 58 15 chr4 120399337 120399474 -35230646 + ID_B1 SINE B4 82 224 0 9 1503 222 37 0 0 chr4 120399477 120399504 -35230616 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1503 915 238 49 38 chr4 120399610 120399876 -35230244 - B4A SINE B4 -23 269 1 9 1503 417 299 127 65 chr4 120400129 120400308 -35229812 + MLT1A0 LTR MaLR 1 187 -178 9 1503 180 77 0 0 chr4 120400308 120400334 -35229786 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1503 417 299 127 65 chr4 120400334 120400494 -35229626 + MLT1A0 LTR MaLR 188 360 -5 9 1503 180 336 166 14 chr4 120401386 120401525 -35228595 - L2a LINE L2 0 3426 3267 9 1503 194 229 62 0 chr4 120401966 120402014 -35228106 - MIR3 SINE MIR -48 160 110 9 1503 236 53 26 0 chr4 120403121 120403159 -35226961 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1503 335 231 0 37 chr4 120404241 120404322 -35225798 + MIRc SINE MIR 87 164 -104 9 1503 286 348 74 0 chr4 120404668 120404803 -35225317 + L2a LINE L2 3282 3426 0 9 1503 927 255 41 65 chr4 120405556 120405846 -35224274 - MER115 DNA Tip100 -6 687 405 9 1503 297 0 0 0 chr4 120407112 120407145 -35222975 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1503 432 0 0 0 chr4 120407145 120407192 -35222928 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1503 618 278 97 19 chr4 120407507 120407723 -35222397 - B4 SINE B4 -51 241 9 9 1503 282 95 0 0 chr4 120407724 120407766 -35222354 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 9 1503 247 269 134 0 chr4 120407769 120407836 -35222284 - ID2 SINE ID 0 83 8 9 1503 291 321 185 26 chr4 120409089 120409284 -35220836 + MIR SINE MIR 37 262 0 9 1503 207 303 100 11 chr4 120409524 120409614 -35220506 + MIRc SINE MIR 120 217 -51 9 1503 446 230 68 66 chr4 120410228 120410475 -35219645 - Charlie18a DNA MER1_type -8 334 50 9 1503 206 233 0 0 chr4 120410535 120410578 -35219542 + MIR SINE MIR 50 92 -116 9 1503 206 355 55 31 chr4 120411038 120411201 -35218919 - L2b LINE L2 -130 3245 3079 9 1503 269 222 19 0 chr4 120411583 120411637 -35218483 + ID4_ SINE ID 20 74 -9 9 1503 218 267 26 137 chr4 120411697 120411814 -35218306 + MIRb SINE MIR 18 121 -147 9 1503 783 159 65 7 chr4 120411841 120411980 -35218140 - B1_Mur2 SINE Alu -1 148 2 9 1503 540 0 0 0 chr4 120411992 120412052 -35218068 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 1503 321 26 0 0 chr4 120412053 120412091 -35218029 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1503 268 233 25 76 chr4 120412117 120412196 -35217924 + ID4_ SINE ID 8 82 -1 9 1503 264 342 86 49 chr4 120412196 120412280 -35217840 + ID_B1 SINE B4 8 176 -48 9 1503 271 211 39 26 chr4 120414365 120414443 -35215677 + PB1 SINE Alu 47 125 -2 9 1503 200 328 0 0 chr4 120415925 120415992 -35214128 + MIR SINE MIR 108 174 -88 9 1503 232 257 159 71 chr4 120416060 120416173 -35213947 + MIR3 SINE MIR 10 132 -76 9 1503 356 356 0 6 chr4 120418228 120418403 -35211717 + (CAGA)n Simple_repeat Simple_repeat 3 176 0 9 1503 251 54 27 0 chr4 120418814 120418851 -35211269 + (CAGGG)n Simple_repeat Simple_repeat 1 38 0 9 1503 218 219 12 47 chr4 120419736 120419822 -35210298 + (CGGGG)n Simple_repeat Simple_repeat 1 83 0 9 1503 225 83 0 0 chr4 120420095 120420131 -35209989 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 9 1503 24 77 0 0 chr4 120420236 120420288 -35209832 + GC_rich Low_complexity Low_complexity 1 52 0 9 1503 354 138 0 0 chr4 120420501 120420559 -35209561 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 9 1503 422 18 18 0 chr4 120422256 120422311 -35207809 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1503 811 0 10 10 chr4 120423209 120423309 -35206811 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 9 1503 338 246 45 14 chr4 120423389 120423508 -35206612 - B1F1 SINE Alu -22 126 9 9 1503 245 232 101 0 chr4 120423458 120423527 -35206593 - B4 SINE B4 -147 145 70 9 1503 520 252 17 0 chr4 120424559 120424674 -35205446 + PB1 SINE Alu 11 127 0 9 1503 423 169 14 0 chr4 120424682 120424753 -35205367 + ID2 SINE ID 2 73 -10 9 1503 422 332 100 27 chr4 120425259 120425479 -35204641 + L1MEd LINE L1 892 1127 -4992 9 1503 834 337 19 21 chr4 120425510 120425883 -35204237 + HAL1 LINE L1 1303 1674 -833 9 1503 575 174 0 58 chr4 120426404 120426593 -35203527 + C-rich Low_complexity Low_complexity 3 180 0 9 1503 195 129 0 0 chr4 120426601 120426632 -35203488 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 9 1503 562 198 38 0 chr4 120426633 120426739 -35203381 - PB1D9 SINE Alu -2 118 9 9 1503 209 258 53 53 chr4 120426744 120426838 -35203282 + MIR SINE MIR 91 184 -78 9 1503 750 194 131 6 chr4 120426857 120427033 -35203087 - ID_B1 SINE B4 0 224 27 9 1503 774 97 0 0 chr4 120427120 120427233 -35202887 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 9 1503 192 385 120 0 chr4 120427490 120427607 -35202513 - L2b LINE L2 -201 3174 3044 9 1503 199 279 29 14 chr4 120427712 120427781 -35202339 + MIR SINE MIR 92 161 -101 9 1503 457 178 178 0 chr4 120427794 120427895 -35202225 - ID_B1 SINE B4 -1 223 105 9 1503 354 212 35 103 chr4 120427895 120427910 -35202210 - PB1D7 SINE Alu -1 119 12 9 1503 239 304 38 0 chr4 120428356 120428435 -35201685 + MIR SINE MIR 28 109 -99 9 1503 190 318 164 55 chr4 120428955 120429138 -35200982 + L4 LINE RTE 1700 1902 -127 9 1503 215 372 29 14 chr4 120431618 120431757 -35198363 + MIRc SINE MIR 11 151 -117 9 1503 183 214 0 0 chr4 120433089 120433131 -35196989 - L2c LINE L2 -3 3384 3343 9 1503 603 0 0 0 chr4 120435540 120435607 -35194513 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1503 864 223 74 0 chr4 120435639 120435814 -35194306 - ID_B1 SINE B4 -35 189 2 9 1503 241 197 15 15 chr4 120435825 120435892 -35194228 + CT-rich Low_complexity Low_complexity 3 69 0 9 1503 1064 93 98 65 chr4 120435894 120436078 -35194042 - B2_Mm2 SINE B2 -5 190 1 9 1503 788 158 70 21 chr4 120436783 120436925 -35193195 + B1_Mur4 SINE Alu 1 149 -1 9 1503 363 247 0 58 chr4 120437341 120437427 -35192693 + RSINE1 SINE B4 12 92 -73 9 1503 879 168 7 7 chr4 120438751 120438895 -35191225 - B1_Mur4 SINE Alu -6 144 1 9 1503 270 0 0 0 chr4 120439172 120439202 -35190918 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1503 281 330 11 0 chr4 120440262 120440353 -35189767 - B1F1 SINE Alu -57 92 1 9 1503 257 350 83 45 chr4 120440526 120440725 -35189395 + L2b LINE L2 3199 3387 0 9 1503 250 310 0 54 chr4 120441066 120441158 -35188962 - MIR3 SINE MIR -14 194 108 9 1503 712 227 35 0 chr4 120444429 120444570 -35185550 + B1_Mur1 SINE Alu 3 148 -1 9 1503 1452 131 18 9 chr4 120444670 120444893 -35185227 + URR1B DNA MER1_type 1 225 0 9 1503 389 260 14 0 chr4 120446478 120446551 -35183569 - ID4_ SINE ID -8 75 2 9 1503 180 0 0 0 chr4 120446869 120446889 -35183231 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1503 315 71 0 0 chr4 120447312 120447354 -35182766 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 9 1503 740 96 19 0 chr4 120447475 120447579 -35182541 - B2_Mm2 SINE B2 -88 107 2 9 1503 255 104 19 78 chr4 120447585 120447644 -35182476 - B1_Mm SINE Alu -1 148 93 9 1503 213 175 0 0 chr4 120448137 120448177 -35181943 + GA-rich Low_complexity Low_complexity 1 40 0 9 1503 227 196 65 0 chr4 120448181 120448227 -35181893 - ID_B1 SINE B4 -59 165 117 9 1503 940 104 67 0 chr4 120448252 120448386 -35181734 - B1_Mus2 SINE Alu 0 147 5 9 1503 1127 29 0 0 chr4 120448650 120448786 -35181334 - B1_Mm SINE Alu -2 145 10 1 1503 478 214 56 94 chr4 120448654 120448814 -35181306 - B4A SINE B4 -71 221 68 1 1503 461 300 72 16 chr4 120448814 120449007 -35181113 - L1M5 LINE L1 -425 5739 5536 1 1503 339 24 0 23 chr4 120449254 120449297 -35180823 - HAL1-3A_ME LINE L1 -840 2018 1977 1 1503 481 67 10 62 chr4 120449360 120449456 -35180664 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 1 1503 195 146 36 18 chr4 120449597 120449653 -35180467 + (CATA)n Simple_repeat Simple_repeat 4 60 0 1 1503 266 238 0 0 chr4 120449698 120449740 -35180380 + B1F2 SINE Alu 2 43 -106 1 1503 234 291 0 83 chr4 120449740 120449758 -35180362 + B4 SINE B4 87 141 -151 1 1503 587 231 196 0 chr4 120449761 120449904 -35180216 + B3A SINE B2 2 172 -26 1 1503 188 0 74 0 chr4 120449908 120449935 -35180185 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1503 1260 42 0 0 chr4 120449935 120450078 -35180042 - B1_Mus2 SINE Alu -3 144 2 1 1503 246 125 121 35 chr4 120450104 120450162 -35179958 + B1_Mur4 SINE Alu 54 149 -1 1 1503 1060 287 48 19 chr4 120450239 120450509 -35179611 - B4A SINE B4 -7 285 8 1 1503 417 288 27 96 chr4 120450496 120450642 -35179478 - B1F1 SINE Alu -11 138 3 1 1503 319 228 13 0 chr4 120450698 120450777 -35179343 + L2a LINE L2 3330 3409 -17 1 1503 757 136 395 0 chr4 120450924 120451086 -35179034 - URR1A DNA MER1_type 0 226 1 1 1503 255 186 31 92 chr4 120451167 120451232 -35178888 + 4.5SRNA scRNA scRNA 28 88 -6 1 1503 599 208 0 9 chr4 120451181 120451288 -35178832 + B1_Mur1 SINE Alu 43 148 -1 1 1503 248 204 20 0 chr4 120452066 120452115 -35178005 - ID_B1 SINE B4 -70 154 105 1 1503 421 218 35 52 chr4 120452569 120452685 -35177435 + PB1D9 SINE Alu 6 119 -1 1 1503 925 207 68 10 chr4 120452921 120453126 -35176994 + ORR1D1 LTR MaLR 1 217 -157 1 1503 1159 202 35 35 chr4 120453126 120453382 -35176738 + Lx4B LINE L1 6803 7058 0 1 1503 754 202 0 8 chr4 120453399 120453529 -35176591 + B1_Mm SINE Alu 5 133 -14 1 1503 810 211 54 0 chr4 120453547 120453713 -35176407 + ORR1D1 LTR MaLR 200 374 0 1 1503 235 204 204 0 chr4 120454521 120454575 -35175545 - PB1D9 SINE Alu -11 109 45 1 1504 916 116 7 42 chr4 120455180 120455324 -35174796 + B1_Mur4 SINE Alu 11 149 -1 1 1504 182 143 0 20 chr4 120455411 120455461 -35174659 + A-rich Low_complexity Low_complexity 2 50 0 1 1504 306 50 0 0 chr4 120456318 120456358 -35173762 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1504 2236 264 85 8 chr4 120456427 120457087 -35173033 + Lx8 LINE L1 6758 7468 -5 1 1504 1273 35 0 0 chr4 120457098 120457243 -35172877 - B1_Mm SINE Alu -2 145 1 1 1504 851 229 10 26 chr4 120457458 120457651 -35172469 + B3 SINE B2 27 216 0 1 1504 710 215 44 0 chr4 120458470 120458605 -35171515 - B1_Mur1 SINE Alu -7 142 2 1 1504 255 31 0 0 chr4 120458620 120458652 -35171468 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1504 1284 41 0 7 chr4 120458657 120458804 -35171316 - B1_Mus2 SINE Alu -1 146 1 1 1504 1207 184 18 36 chr4 120458824 120459044 -35171076 - B3 SINE B2 0 216 1 1 1504 1071 44 72 14 chr4 120459960 120460086 -35170034 + B1_Mm SINE Alu 2 137 -10 1 1504 252 0 0 0 chr4 120460086 120460114 -35170006 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1504 1071 44 72 14 chr4 120460114 120460125 -35169995 + B1_Mm SINE Alu 138 147 0 1 1504 448 302 63 8 chr4 120460182 120460309 -35169811 + B1F2 SINE Alu 6 139 -10 1 1504 1519 201 75 52 chr4 120460810 120461226 -35168894 + MT2A LTR ERVL 4 540 -61 1 1504 195 42 0 0 chr4 120461226 120461250 -35168870 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1504 402 285 47 155 chr4 120461250 120461310 -35168810 + MT2A LTR ERVL 541 595 -6 1 1504 265 298 104 62 chr4 120461895 120462088 -35168032 + L2c LINE L2 2923 3123 -264 1 1504 250 214 48 64 chr4 120463310 120463328 -35166792 + ORR1B1-int LTR MaLR 632 647 -862 1 1504 811 139 25 0 chr4 120463328 120463450 -35166670 + B1_Mur4 SINE Alu 1 125 -25 1 1504 305 275 156 0 chr4 120463933 120463944 -35166176 + B1F SINE Alu 11 136 -13 1 1504 389 255 102 0 chr4 120463944 120464042 -35166078 + ID_B1 SINE B4 104 211 -13 1 1504 414 263 13 0 chr4 120464100 120464176 -35165944 + RSINE1 SINE B4 81 157 -8 1 1504 1140 96 0 14 chr4 120464315 120464463 -35165657 + B1_Mus2 SINE Alu 2 147 0 1 1504 747 61 0 78 chr4 120464463 120464605 -35165515 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1 1504 4153 61 18 2 chr4 120464673 120465181 -35164939 - L1_Mus1 LINE L1 0 6567 6052 1 1504 379 246 179 18 chr4 120465429 120465541 -35164579 - B1_Mur2 SINE Alu -19 130 1 1 1504 818 303 38 5 chr4 120466094 120466303 -35163817 - ID_B1 SINE B4 -8 216 1 1 1504 452 247 35 0 chr4 120466414 120466499 -35163621 + PB1D10 SINE Alu 1 88 -29 1 1504 252 274 0 0 chr4 120466516 120466567 -35163553 + ZP3AR Satellite Satellite 40 90 -122 1 1504 496 294 17 86 chr4 120466524 120466612 -35163508 + ID SINE ID 6 81 -143 1 1504 412 307 35 9 chr4 120466612 120466727 -35163393 + PB1D7 SINE Alu 1 118 -2 1 1504 268 293 49 0 chr4 120467300 120467382 -35162738 + PB1D9 SINE Alu 20 105 -15 1 1504 334 200 42 28 chr4 120468093 120468165 -35161955 + B1_Mur4 SINE Alu 9 81 -69 1 1504 392 274 0 64 chr4 120468479 120468588 -35161532 + PB1D10 SINE Alu 1 102 -15 1 1504 1568 59 0 11 chr4 120468666 120468854 -35161266 - B2_Mm2 SINE B2 -9 186 1 1 1504 210 196 0 61 chr4 120469222 120469271 -35160849 + PB1D7 SINE Alu 74 119 -1 1 1504 221 288 17 17 chr4 120469280 120469340 -35160780 + ID_B1 SINE B4 80 139 -85 1 1504 235 295 66 14 chr4 120469299 120469396 -35160724 + PB1D7 SINE Alu 18 128 -21 1 1504 1291 35 7 0 chr4 120469641 120469786 -35160334 + B1_Mus2 SINE Alu 2 147 0 1 1504 24 0 0 0 chr4 120469852 120469876 -35160244 + AT_rich Low_complexity Low_complexity 1 24 0 1 1504 543 270 18 65 chr4 120469940 120469957 -35160163 - B3A SINE B2 -36 162 148 1 1504 324 0 0 0 chr4 120469957 120469993 -35160127 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1504 546 235 10 51 chr4 120469993 120470145 -35159975 - B3 SINE B2 -51 147 1 1 1504 533 285 31 0 chr4 120470278 120470408 -35159712 + RSINE1 SINE B4 3 136 -29 1 1504 1428 55 55 0 chr4 120470448 120470629 -35159491 + B2_Mm2 SINE B2 2 192 -3 1 1504 230 143 48 0 chr4 120470815 120470857 -35159263 - ID4 SINE ID -24 59 16 1 1504 180 0 0 0 chr4 120470866 120470886 -35159234 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1504 1244 68 0 0 chr4 120470886 120471032 -35159088 - B1_Mus2 SINE Alu 0 147 2 1 1504 776 175 269 0 chr4 120471471 120471631 -35158489 + B3 SINE B2 1 203 -13 1 1504 237 340 41 0 chr4 120472188 120472285 -35157835 + MER58A DNA MER1_type 13 113 -111 1 1504 191 167 24 0 chr4 120472965 120473007 -35157113 + CT-rich Low_complexity Low_complexity 2 44 0 1 1504 364 218 32 0 chr4 120473155 120473259 -35156861 - PB1 SINE Alu -90 221 24 1 1504 280 247 78 55 chr4 120473351 120473472 -35156648 + MIRm SINE MIR 6 126 -150 1 1504 430 258 113 0 chr4 120474008 120474037 -35156083 + B1_Mur1 SINE Alu 20 48 -101 1 1504 450 0 0 0 chr4 120474037 120474087 -35156033 + (CAGG)n Simple_repeat Simple_repeat 2 51 0 1 1504 430 258 113 0 chr4 120474087 120474154 -35155966 + B1_Mur1 SINE Alu 49 126 -23 1 1504 727 232 62 42 chr4 120474176 120474369 -35155751 + B3 SINE B2 2 198 -18 1 1504 2777 91 29 5 chr4 120474858 120475232 -35154888 + L1Md_F2 LINE L1 6194 6576 -6 1 1504 1244 50 0 0 chr4 120475234 120475373 -35154747 + B1_Mm SINE Alu 2 140 -7 1 1504 298 179 0 62 chr4 120475378 120475460 -35154660 + A-rich Low_complexity Low_complexity 1 75 0 1 1504 882 117 148 0 chr4 120475460 120475588 -35154532 + B1_Mus2 SINE Alu 1 147 0 1 1504 298 179 0 62 chr4 120475588 120475618 -35154502 + A-rich Low_complexity Low_complexity 76 105 0 1 1504 719 214 95 3 chr4 120475817 120475971 -35154149 - B3 SINE B2 0 198 33 1 1504 1554 53 11 5 chr4 120475996 120476184 -35153936 + B2_Mm1t SINE B2 2 190 -3 1 1504 689 292 144 74 chr4 120476299 120476569 -35153551 - B4A SINE B4 -1 291 3 1 1504 276 201 0 22 chr4 120476701 120476758 -35153362 - B3 SINE B2 -113 85 32 1 1504 513 265 216 6 chr4 120476790 120476957 -35153163 - ID_B1 SINE B4 -21 203 2 1 1504 1032 249 5 40 chr4 120476966 120477188 -35152932 - B3 SINE B2 -2 214 1 1 1504 264 261 215 50 chr4 120477193 120477314 -35152806 - B1_Mur1 SINE Alu -8 141 1 1 1504 226 184 0 0 chr4 120477315 120477353 -35152767 - PB1D7 SINE Alu -34 86 49 1 1504 771 179 97 0 chr4 120477406 120477540 -35152580 + B1_Mur1 SINE Alu 1 147 -2 1 1504 650 245 75 86 chr4 120477550 120477724 -35152396 + B3A SINE B2 8 179 -16 1 1504 392 215 100 27 chr4 120478513 120478623 -35151497 - PB1D9 SINE Alu -2 118 1 1 1504 291 325 94 26 chr4 120478660 120478777 -35151343 - B1F SINE Alu -14 135 11 1 1504 252 280 161 0 chr4 120478901 120478994 -35151126 + MIRc SINE MIR 96 203 -65 1 1504 835 197 42 0 chr4 120479678 120479820 -35150300 - B1F2 SINE Alu 0 149 2 1 1504 221 240 186 31 chr4 120480081 120480210 -35149910 + L2 LINE L2 2347 2495 -924 1 1504 314 239 64 21 chr4 120480475 120480569 -35149551 + RMER30 DNA MER1_type 2 99 -103 1 1504 402 299 152 62 chr4 120480954 120481132 -35148988 - ID_B1 SINE B4 -29 195 2 1 1504 207 0 0 0 chr4 120481484 120481507 -35148613 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1504 331 284 0 58 chr4 120482715 120482801 -35147319 + ID4_ SINE ID 1 81 -2 1 1504 224 213 0 0 chr4 120482803 120482850 -35147270 + A-rich Low_complexity Low_complexity 2 48 0 1 1504 763 255 50 68 chr4 120482936 120483155 -35146965 - B3 SINE B2 0 216 2 1 1504 788 74 32 24 chr4 120483499 120483624 -35146496 + BC1_Mm scRNA scRNA 1 126 -26 1 1504 444 218 242 31 chr4 120484038 120484166 -35145954 + RSINE1 SINE B4 4 158 -7 1 1504 350 190 47 12 chr4 120484205 120484290 -35145830 - ID_B1 SINE B4 -1 223 136 1 1504 494 252 132 53 chr4 120484385 120484536 -35145584 + RSINE1 SINE B4 3 165 0 1 1504 639 267 116 0 chr4 120484791 120484963 -35145157 + ID_B1 SINE B4 8 199 -25 1 1504 396 262 83 76 chr4 120484974 120485107 -35145013 + RSINE1 SINE B4 8 142 -23 1 1504 369 62 0 0 chr4 120485107 120485155 -35144965 + (CCA)n Simple_repeat Simple_repeat 3 50 0 1 1504 396 262 83 76 chr4 120485155 120485178 -35144942 + RSINE1 SINE B4 143 165 0 1 1504 1113 246 48 29 chr4 120485221 120485493 -35144627 + B4A SINE B4 1 277 -15 1 1504 581 262 67 7 chr4 120485569 120485719 -35144401 - ID_B1 SINE B4 -54 170 12 1 1504 22 0 0 0 chr4 120485754 120485776 -35144344 + AT_rich Low_complexity Low_complexity 1 22 0 1 1504 253 290 50 61 chr4 120489175 120489274 -35140846 + PB1D10 SINE Alu 4 101 -16 1 1504 296 272 182 7 chr4 120490338 120490486 -35139634 + MIRb SINE MIR 80 253 -15 1 1504 292 274 138 28 chr4 120490624 120490733 -35139387 + ID_B1 SINE B4 95 215 -9 1 1504 228 35 0 0 chr4 120490898 120490927 -35139193 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1504 787 203 14 0 chr4 120491005 120491143 -35138977 + B1_Mur3 SINE Alu 2 141 -8 1 1504 323 297 47 47 chr4 120491310 120491416 -35138704 + PB1D10 SINE Alu 4 109 -8 1 1504 323 284 0 29 chr4 120491442 120491511 -35138609 + ID4 SINE ID 13 79 -4 1 1504 1211 56 14 0 chr4 120491548 120491692 -35138428 - B1_Mus1 SINE Alu -1 147 2 1 1504 380 164 104 0 chr4 120491863 120491930 -35138190 + B1F1 SINE Alu 70 143 -6 1 1504 229 243 168 53 chr4 120491991 120492104 -35138016 + L3 LINE CR1 4284 4409 -80 1 1504 580 184 46 0 chr4 120492319 120492428 -35137692 + B1_Mur4 SINE Alu 28 141 -9 1 1504 408 246 54 62 chr4 120492428 120492449 -35137671 + B4 SINE B4 112 240 -52 1 1504 548 302 16 8 chr4 120492573 120492700 -35137420 - RSINE1 SINE B4 -36 129 2 1 1504 630 215 92 0 chr4 120493144 120493274 -35136846 + B1_Mur2 SINE Alu 2 143 -6 1 1504 1396 90 34 0 chr4 120493816 120493994 -35136126 - B2_Mm2 SINE B2 -11 184 1 1 1504 291 54 0 0 chr4 120494793 120494830 -35135290 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1504 311 241 132 0 chr4 120495388 120495471 -35134649 + PB1 SINE Alu 22 115 -12 1 1504 603 285 179 0 chr4 120495499 120495678 -35134442 - ID_B1 SINE B4 -12 212 2 1 1504 928 141 0 7 chr4 120495944 120496080 -35134040 + B1_Mus1 SINE Alu 1 135 -13 1 1504 471 204 59 50 chr4 120496151 120496270 -35133850 + PB1D9 SINE Alu 1 120 0 1 1504 535 295 25 19 chr4 120496279 120496438 -35133682 + RSINE1 SINE B4 4 163 -2 1 1504 23 54 0 0 chr4 120496438 120496475 -35133645 + AT_rich Low_complexity Low_complexity 1 37 0 1 1504 446 277 21 42 chr4 120496494 120496637 -35133483 + ID_B1 SINE B4 84 223 -1 1 1504 196 245 75 0 chr4 120496740 120496793 -35133327 + MIR SINE MIR 48 104 -158 1 1504 253 292 46 0 chr4 120496813 120496878 -35133242 - PB1 SINE Alu -16 111 44 1 1504 283 222 56 0 chr4 120497094 120497148 -35132972 + ID SINE ID 1 57 -167 1 1504 334 284 50 33 chr4 120498623 120498743 -35131377 + RSINE1 SINE B4 28 149 -16 1 1504 423 0 0 0 chr4 120498743 120498790 -35131330 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1504 1353 84 39 0 chr4 120498863 120499042 -35131078 + B2_Mm2 SINE B2 2 187 -8 1 1504 253 210 103 22 chr4 120499065 120499166 -35130954 + B4 SINE B4 8 113 -179 1 1504 404 293 41 67 chr4 120499180 120499249 -35130871 + B4A SINE B4 33 151 -141 1 1504 505 200 98 9 chr4 120499249 120499376 -35130744 + B1_Mur4 SINE Alu 2 144 -6 1 1504 404 293 41 67 chr4 120499376 120499454 -35130666 + B4A SINE B4 152 290 -2 1 1504 473 242 63 16 chr4 120499567 120499693 -35130427 - B1F SINE Alu -15 134 3 1 1504 369 0 0 0 chr4 120499693 120499734 -35130386 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1504 416 0 56 0 chr4 120499734 120499788 -35130332 + (GAAAA)n Simple_repeat Simple_repeat 1 57 0 1 1504 278 151 90 64 chr4 120499788 120499866 -35130254 + RLTR25B LTR ERVK 430 509 -519 1 1504 773 64 0 52 chr4 120499800 120499915 -35130205 + B1_Mus2 SINE Alu 39 147 0 1 1504 186 43 0 0 chr4 120499915 120499938 -35130182 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1504 683 243 40 0 chr4 120500072 120500220 -35129900 + ID_B1 SINE B4 2 155 -69 1 1504 686 161 25 25 chr4 120500228 120500349 -35129771 + B1_Mus1 SINE Alu 6 126 -22 2 1504 378 161 52 103 chr4 120500265 120500362 -35129758 + RLTR25A LTR ERVK 521 612 -491 3 1504 1373 53 0 6 chr4 120500612 120500784 -35129336 + B2_Mm2 SINE B2 1 171 -24 4 1504 1287 34 0 0 chr4 120500795 120500942 -35129178 - B1_Mus2 SINE Alu 0 147 1 5 1504 1263 48 0 0 chr4 120501189 120501335 -35128785 + B1_Mus2 SINE Alu 2 147 0 6 1504 243 0 0 0 chr4 120501335 120501362 -35128758 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1504 465 19 0 0 chr4 120501803 120501857 -35128263 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 1504 909 202 155 101 chr4 120502296 120502634 -35127486 - MT2A LTR ERVL -174 359 1 9 1504 334 216 26 39 chr4 120502678 120502755 -35127365 - PB1 SINE Alu -36 91 16 1 1504 427 330 56 20 chr4 120502777 120502975 -35127145 + MamRep605 Unknown Unknown 585 789 -87 1 1504 508 365 16 11 chr4 120503129 120503312 -35126808 - B4A SINE B4 -2 290 107 1 1504 22 70 0 0 chr4 120503325 120503368 -35126752 + AT_rich Low_complexity Low_complexity 1 43 0 1 1504 350 286 259 0 chr4 120503430 120503577 -35126543 - MT2A LTR ERVL 0 533 349 1 1504 1053 258 73 96 chr4 120503585 120503965 -35126155 - MT2A LTR ERVL -105 428 76 1 1504 4006 119 36 0 chr4 120503965 120504545 -35125575 - MT2B LTR ERVL 0 601 1 1 1504 1053 258 73 96 chr4 120504545 120504602 -35125518 - MT2A LTR ERVL -458 75 2 1 1504 263 267 164 29 chr4 120504636 120504740 -35125380 - B1F SINE Alu -31 118 1 1 1504 258 32 0 0 chr4 120504743 120504774 -35125346 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1504 672 219 8 0 chr4 120504775 120504903 -35125217 - B1_Mur1 SINE Alu -15 134 6 1 1504 373 216 72 0 chr4 120504915 120505037 -35125083 - L1M4 LINE L1 -352 5822 5682 2 1504 258 289 0 95 chr4 120505052 120505136 -35124984 + B1_Mus1 SINE Alu 36 111 -37 2 1504 283 247 13 13 chr4 120505170 120505248 -35124872 - L1M4 LINE L1 -510 5664 5587 2 1504 297 98 86 21 chr4 120505378 120505442 -35124678 - B1F SINE Alu 0 149 53 2 1504 722 302 42 119 chr4 120505554 120505956 -35124164 + LTR16B2 LTR ERVL 23 393 -69 2 1504 224 111 22 0 chr4 120505957 120506002 -35124118 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 2 1504 478 359 44 38 chr4 120506156 120506406 -35123714 + LTR16D LTR ERVL 9 291 -384 2 1504 517 263 14 14 chr4 120506911 120507050 -35123070 - B1F2 SINE Alu -2 147 9 2 1504 483 297 16 8 chr4 120507166 120507295 -35122825 + ID_B1 SINE B4 90 219 -5 2 1504 229 294 38 109 chr4 120507178 120507361 -35122759 - YREP_Mm Unknown Unknown -1516 296 127 2 1504 2192 153 126 81 chr4 120507382 120507742 -35122378 - RLTR31_Mm LTR ERVK 0 561 195 2 1504 1684 32 0 0 chr4 120507742 120507932 -35122188 - B2_Mm1a SINE B2 -2 191 2 3 1504 2192 153 126 81 chr4 120507932 120508104 -35122016 - RLTR31_Mm LTR ERVK -367 194 5 2 1504 180 0 0 0 chr4 120508105 120508125 -35121995 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1504 338 33 67 0 chr4 120508134 120508194 -35121926 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1504 1779 99 0 0 chr4 120508194 120508437 -35121683 + ORR1A2 LTR MaLR 4 246 -81 3 1504 359 282 75 25 chr4 120508439 120508559 -35121561 + ID_B1 SINE B4 96 221 -3 3 1504 267 214 97 28 chr4 120508630 120508702 -35121418 + MIR SINE MIR 1 77 -185 3 1504 1507 222 51 75 chr4 120508819 120508917 -35121203 + ORR1D1 LTR MaLR 1 94 -280 3 1504 952 162 0 7 chr4 120508917 120509066 -35121054 + B1_Mur3 SINE Alu 1 148 -1 3 1504 1507 222 51 75 chr4 120509066 120509342 -35120778 + ORR1D1 LTR MaLR 95 366 -8 3 1504 423 186 44 7 chr4 120509370 120509476 -35120644 + PB1D9 SINE Alu 2 126 -1 3 1504 306 266 8 135 chr4 120509513 120509567 -35120553 + PB1D10 SINE Alu 1 53 -64 3 1504 1076 132 63 0 chr4 120509567 120509741 -35120379 + B2_Mm2 SINE B2 2 186 -9 4 1504 306 266 8 135 chr4 120509741 120509812 -35120308 + PB1D10 SINE Alu 54 110 -7 3 1504 3900 182 24 9 chr4 120510272 120510969 -35119151 - ETnERV2-int LTR ERVK -204 7202 6495 4 1504 868 287 15 7 chr4 120510999 120511354 -35118766 - ETnERV3-int LTR ERVK -389 7828 7506 4 1504 4386 172 70 19 chr4 120511343 120512339 -35117781 - ETnERV3-int LTR ERVK -420 5388 3611 4 1504 258 32 0 0 chr4 120512708 120512739 -35117381 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1504 714 224 0 66 chr4 120513033 120513200 -35116920 - ID_B1 SINE B4 -2 222 67 4 1504 319 262 0 208 chr4 120513647 120513704 -35116416 + B3A SINE B2 2 46 -152 4 1504 1168 68 0 20 chr4 120513704 120513853 -35116267 - B1_Mus2 SINE Alu 0 147 2 4 1504 319 262 0 208 chr4 120513853 120513925 -35116195 + B3A SINE B2 47 104 -94 4 1504 582 194 0 10 chr4 120514024 120514128 -35115992 - B3 SINE B2 -86 130 28 4 1504 306 214 30 168 chr4 120514122 120514223 -35115897 + B3A SINE B2 109 195 -3 4 1504 256 191 0 0 chr4 120514234 120514281 -35115839 - PB1D9 SINE Alu -1 119 73 4 1504 747 232 7 7 chr4 120514382 120514521 -35115599 + B1F1 SINE Alu 5 143 -6 4 1504 348 312 49 67 chr4 120514587 120514810 -35115310 + MER112 DNA MER1_type 10 228 -33 5 1504 689 209 10 40 chr4 120514796 120514993 -35115127 - B3 SINE B2 -4 191 3 5 1504 334 109 31 0 chr4 120515018 120515095 -35115025 - B1_Mus2 SINE Alu -2 145 1 5 1504 624 196 124 35 chr4 120515104 120515273 -35114847 - B2_Mm2 SINE B2 -10 185 2 5 1504 512 238 85 24 chr4 120515375 120515539 -35114581 + HAL1-2a_MD LINE L1 2362 2535 -489 5 1504 309 276 34 11 chr4 120515608 120515696 -35114424 - MLT1K LTR MaLR -341 254 165 5 1504 222 182 20 81 chr4 120515802 120515873 -35114247 + PB1D10 SINE Alu 60 127 0 5 1504 195 100 0 0 chr4 120515895 120515925 -35114195 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 1504 1397 82 16 0 chr4 120515986 120516170 -35113950 - B2_Mm2 SINE B2 -8 187 1 5 1504 1074 111 256 0 chr4 120516760 120516940 -35113180 - URR1A DNA MER1_type 0 226 1 5 1504 306 320 66 0 chr4 120516942 120517064 -35113056 + LTR33A LTR ERVL 343 472 -48 6 1504 758 263 63 5 chr4 120517299 120517505 -35112615 - ID_B1 SINE B4 -4 220 3 6 1504 227 222 40 28 chr4 120518102 120518170 -35111950 + MIR SINE MIR 55 131 -137 6 1504 749 238 0 14 chr4 120518170 120518181 -35111939 - B1_Mur2 SINE Alu -3 146 137 6 1504 192 40 0 0 chr4 120518181 120518206 -35111914 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 1504 749 238 0 14 chr4 120518206 120518339 -35111781 - B1_Mur2 SINE Alu -13 136 4 6 1504 209 239 98 53 chr4 120518339 120518375 -35111745 + MIRc SINE MIR 132 168 -100 6 1504 852 102 110 0 chr4 120518378 120518505 -35111615 + B1_Mus1 SINE Alu 1 141 -7 6 1504 210 37 0 0 chr4 120518518 120518545 -35111575 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1504 502 215 56 0 chr4 120518548 120518655 -35111465 + PB1D10 SINE Alu 1 113 -4 6 1504 344 333 32 24 chr4 120518677 120518803 -35111317 + B1F1 SINE Alu 6 132 -17 6 1504 211 333 33 0 chr4 120518872 120518962 -35111158 + MIRc SINE MIR 163 255 -13 6 1504 2441 82 28 0 chr4 120519572 120519890 -35110230 + ORR1A2 LTR MaLR 1 327 0 7 1504 3396 89 10 35 chr4 120520062 120520549 -35109571 - MT2C_Mm LTR ERVL 0 475 1 7 1504 278 29 0 0 chr4 120520554 120520589 -35109531 - MERVL_2A-int LTR ERVL -3 5482 5448 7 1504 370 254 101 36 chr4 120520589 120520728 -35109392 - ORR1A3-int LTR MaLR -1323 640 493 7 1504 3378 131 32 2 chr4 120520734 120521262 -35108858 - MERVL_2A-int LTR ERVL -237 5524 4981 7 1504 209 276 110 44 chr4 120522057 120522148 -35107972 - MIRb SINE MIR -59 209 113 7 1504 993 224 10 38 chr4 120522807 120523016 -35107104 - B3 SINE B2 -6 210 8 7 1504 273 29 0 0 chr4 120523166 120523200 -35106920 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1504 1199 100 78 0 chr4 120523283 120523463 -35106657 + B2_Mm2 SINE B2 1 194 -1 7 1504 810 231 0 0 chr4 120523479 120523626 -35106494 + B1_Mur2 SINE Alu 2 148 -1 7 1504 455 278 9 6 chr4 120524202 120524330 -35105790 - PB1D10 SINE Alu -21 127 5 7 1504 427 227 0 26 chr4 120524402 120524515 -35105605 - L1MA5 LINE L1 -15 6285 6176 7 1504 426 255 89 16 chr4 120524522 120524713 -35105407 - L1MA5 LINE L1 -7 6293 6089 8 1504 337 260 72 10 chr4 120524714 120524811 -35105309 - L1MC LINE L1 -1309 4837 4735 8 1504 693 168 16 8 chr4 120525474 120525600 -35104520 + B1_Mus2 SINE Alu 1 127 -20 8 1504 913 171 36 57 chr4 120525731 120525923 -35104197 - B2_Mm2 SINE B2 0 195 8 8 1504 727 252 80 68 chr4 120525999 120526387 -35103733 + MT2A LTR ERVL 1 560 -41 8 1504 531 82 0 0 chr4 120526387 120526460 -35103660 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 1504 722 250 88 80 chr4 120526460 120526504 -35103616 + MT2A LTR ERVL 561 601 0 8 1504 628 230 112 32 chr4 120526753 120526945 -35103175 - B3A SINE B2 -2 193 8 8 1504 225 94 0 0 chr4 120526945 120526977 -35103143 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1504 26 82 0 0 chr4 120527590 120527651 -35102469 + GC_rich Low_complexity Low_complexity 1 61 0 8 1504 273 327 70 35 chr4 120528933 120529047 -35101073 + MIRb SINE MIR 17 134 -134 8 1504 398 244 68 15 chr4 120530174 120530307 -35099813 + B1F2 SINE Alu 2 141 -8 9 1504 398 179 267 25 chr4 120530492 120530612 -35099508 + B1F1 SINE Alu 1 149 0 9 1504 336 287 86 17 chr4 120531550 120531667 -35098453 + MER45A DNA Tip100 46 170 -8 9 1504 186 71 0 0 chr4 120532046 120532074 -35098046 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 9 1504 299 336 159 0 chr4 120532076 120532189 -35097931 - B1F1 SINE Alu -15 134 4 9 1504 558 333 73 43 chr4 120532583 120533050 -35097070 + L2c LINE L2 2483 2963 -456 9 1504 186 133 0 0 chr4 120533185 120533215 -35096905 + (TCC)n Simple_repeat Simple_repeat 3 32 0 9 1504 257 298 105 23 chr4 120533281 120533367 -35096753 - B4A SINE B4 -79 213 121 9 1504 273 151 0 0 chr4 120533373 120533426 -35096694 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1504 495 194 10 16 chr4 120533429 120533531 -35096589 - B4A SINE B4 -190 102 1 9 1504 204 258 32 16 chr4 120533609 120533672 -35096448 + L2c LINE L2 3322 3385 -2 9 1504 623 306 74 21 chr4 120533691 120534028 -35096092 + L2 LINE L2 2728 3082 -337 1 1504 268 258 43 43 chr4 120534870 120534939 -35095181 - ID4 SINE ID -10 73 5 1 1504 391 212 150 10 chr4 120534941 120535041 -35095079 - PB1D10 SINE Alu -1 119 6 1 1504 22 80 0 0 chr4 120535139 120535189 -35094931 + AT_rich Low_complexity Low_complexity 1 50 0 1 1504 266 283 190 8 chr4 120535285 120535406 -35094714 - MIRb SINE MIR -18 250 108 1 1504 361 212 112 56 chr4 120535589 120535714 -35094406 + MIRm SINE MIR 39 170 -106 1 1504 886 177 24 54 chr4 120535807 120535974 -35094146 - RSINE1 SINE B4 -2 163 2 1 1504 262 355 78 36 chr4 120536080 120536299 -35093821 + MER113 DNA MER1_type 5 232 -289 1 1504 529 271 45 0 chr4 120536372 120536505 -35093615 - B1F SINE Alu -1 148 10 1 1504 513 274 7 22 chr4 120536536 120536674 -35093446 - RSINE1 SINE B4 0 165 30 1 1504 478 272 117 5 chr4 120536683 120536897 -35093223 + MER113 DNA MER1_type 284 521 0 1 1504 527 214 0 8 chr4 120537656 120537788 -35092332 + CT-rich Low_complexity Low_complexity 3 133 0 1 1504 253 204 0 0 chr4 120537796 120537840 -35092280 - ID4 SINE ID -1 82 39 1 1504 279 0 0 0 chr4 120538538 120538569 -35091551 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1504 297 304 28 47 chr4 120539297 120539404 -35090716 + MER94 DNA AcHobo 21 125 -9 1 1504 743 147 0 44 chr4 120539857 120539992 -35090128 + B1_Mus2 SINE Alu 19 147 0 1 1504 273 300 58 133 chr4 120539868 120540024 -35090096 + B4 SINE B4 111 255 -37 1 1504 453 248 30 0 chr4 120540024 120540125 -35089995 - PB1D7 SINE Alu -12 108 5 1 1504 273 300 58 133 chr4 120540125 120540141 -35089979 + B4 SINE B4 256 270 -22 1 1504 437 261 81 15 chr4 120540857 120540993 -35089127 + MER5A1 DNA MER1_type 22 166 0 1 1504 386 242 73 59 chr4 120541541 120541677 -35088443 - L2b LINE L2 0 3375 3238 1 1504 556 341 72 45 chr4 120541699 120542058 -35088062 - MLT1B LTR MaLR 0 390 22 1 1504 430 92 0 54 chr4 120543458 120543550 -35086570 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1504 333 0 0 0 chr4 120543550 120543587 -35086533 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1504 1043 163 114 0 chr4 120544450 120544652 -35085468 + URR1B DNA MER1_type 1 225 0 1 1504 584 228 41 0 chr4 120544758 120544881 -35085239 + ID_B1 SINE B4 88 215 -9 1 1504 246 189 141 22 chr4 120545466 120545558 -35084562 + MER117 DNA MER1_type 60 162 -35 1 1504 664 228 39 8 chr4 120546282 120546418 -35083702 - ID_B1 SINE B4 -46 246 98 1 1504 180 264 0 86 chr4 120546538 120546596 -35083524 - MIR3 SINE MIR -47 161 109 1 1504 361 349 41 41 chr4 120547047 120547244 -35082876 + MIRb SINE MIR 1 197 -71 1 1504 679 238 10 0 chr4 120547865 120548061 -35082059 + B4A SINE B4 2 292 0 1 1504 423 299 23 114 chr4 120548107 120548326 -35081794 + L2b LINE L2 3182 3419 -7 1 1504 261 308 83 8 chr4 120548406 120548527 -35081593 - MLT1K LTR MaLR -2 593 464 1 1504 487 170 84 9 chr4 120548888 120548995 -35081125 - PB1D10 SINE Alu -2 115 1 1 1504 277 299 50 21 chr4 120549055 120549195 -35080925 + L1ME4a LINE L1 5763 5906 -218 1 1504 1236 48 0 0 chr4 120549411 120549558 -35080562 - B1_Mm SINE Alu 0 147 1 1 1504 22 0 0 0 chr4 120549609 120549631 -35080489 + AT_rich Low_complexity Low_complexity 1 22 0 1 1504 1507 63 0 31 chr4 120549651 120549847 -35080273 - B2_Mm2 SINE B2 -5 190 1 1 1504 21 0 0 0 chr4 120550004 120550025 -35080095 + AT_rich Low_complexity Low_complexity 1 21 0 1 1504 342 312 58 13 chr4 120550054 120550210 -35079910 - RSINE1 SINE B4 -2 163 1 1 1504 217 296 26 52 chr4 120550836 120550937 -35079183 - MIRc SINE MIR -146 122 16 1 1504 248 291 79 35 chr4 120552243 120552357 -35077763 - MIR3 SINE MIR 0 208 90 1 1504 201 333 155 17 chr4 120552365 120552481 -35077639 + MIRb SINE MIR 46 177 -91 1 1504 402 21 0 0 chr4 120552676 120552723 -35077397 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1504 288 154 0 0 chr4 120552725 120552777 -35077343 + (CGTG)n Simple_repeat Simple_repeat 4 55 0 1 1504 252 295 95 0 chr4 120553246 120553351 -35076769 + MIRc SINE MIR 61 175 -93 1 1504 306 0 0 0 chr4 120554473 120554507 -35075613 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1504 216 0 0 0 chr4 120555137 120555161 -35074959 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1504 234 0 0 0 chr4 120556508 120556534 -35073586 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1504 722 301 16 0 chr4 120556713 120556899 -35073221 - MER2 DNA MER2_type -8 337 149 1 1504 332 277 48 38 chr4 120556895 120557000 -35073120 - B1F SINE Alu -39 110 5 1 1504 249 236 97 0 chr4 120557004 120557076 -35073044 - MER2 DNA MER2_type -194 151 73 1 1504 212 322 43 86 chr4 120557233 120557420 -35072700 - MIRb SINE MIR -62 206 28 1 1504 205 152 0 0 chr4 120557438 120557471 -35072649 + (CCA)n Simple_repeat Simple_repeat 2 34 0 1 1504 180 0 0 0 chr4 120557483 120557503 -35072617 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1504 587 261 28 14 chr4 120557556 120557700 -35072420 + ID_B1 SINE B4 79 224 0 1 1504 978 259 64 11 chr4 120557764 120558029 -35072091 + B4A SINE B4 2 280 -12 1 1504 329 339 24 0 chr4 120558511 120558635 -35071485 + MIRb SINE MIR 136 262 -6 1 1504 21 0 0 0 chr4 120558785 120558806 -35071314 + AT_rich Low_complexity Low_complexity 1 21 0 1 1504 728 294 52 0 chr4 120558933 120559144 -35070976 + ID_B1 SINE B4 2 223 -1 1 1504 613 291 0 0 chr4 120559217 120559351 -35070769 + B1F1 SINE Alu 1 134 -15 1 1504 265 267 0 0 chr4 120559872 120559932 -35070188 + MIRc SINE MIR 104 163 -105 1 1504 1719 31 0 0 chr4 120561252 120561445 -35068675 - B2_Mm1a SINE B2 0 193 1 1 1504 311 207 132 44 chr4 120562234 120562325 -35067795 - RSINE1 SINE B4 -61 104 6 1 1504 251 290 0 0 chr4 120562332 120562394 -35067726 + C-rich Low_complexity Low_complexity 1 62 0 1 1504 533 310 84 22 chr4 120562875 120563053 -35067067 + B3A SINE B2 7 195 -3 1 1504 180 0 0 0 chr4 120563315 120563335 -35066785 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1504 211 267 0 0 chr4 120564269 120564329 -35065791 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1504 207 0 0 0 chr4 120567125 120567148 -35062972 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1504 193 250 51 26 chr4 120568278 120568356 -35061764 + MIR3 SINE MIR 117 196 -12 1 1504 327 269 112 35 chr4 120569592 120569850 -35060270 + L1M5 LINE L1 3723 4000 -2146 1 1504 734 271 0 74 chr4 120569876 120570079 -35060041 + B3A SINE B2 2 189 -9 1 1504 639 236 14 27 chr4 120570093 120570241 -35059879 + B1F2 SINE Alu 3 148 -1 1 1504 1022 161 104 23 chr4 120570271 120570495 -35059625 - ORR1B1 LTR MaLR -153 225 1 1 1504 1431 81 5 0 chr4 120570523 120570709 -35059411 - B2_Mm1a SINE B2 -6 187 1 1 1504 847 282 16 64 chr4 120570742 120570918 -35059202 + B4A SINE B4 53 229 -63 1 1504 1208 174 9 14 chr4 120570918 120571134 -35058986 + B3 SINE B2 1 215 -1 1 1504 847 282 16 64 chr4 120571134 120571207 -35058913 + B4A SINE B4 230 290 -2 1 1504 2130 124 112 0 chr4 120571356 120571703 -35058417 - ORR1B1 LTR MaLR -8 386 1 1 1504 283 231 66 115 chr4 120571709 120571831 -35058289 + PB1D10 SINE Alu 1 116 -1 1 1504 468 225 72 0 chr4 120571849 120571960 -35058160 + B1F1 SINE Alu 30 148 -1 1 1504 386 277 122 8 chr4 120571963 120572094 -35058026 + RSINE1 SINE B4 3 148 -17 1 1504 961 177 19 7 chr4 120572126 120572294 -35057826 + ORR1D1 LTR MaLR 3 170 -204 1 1504 876 108 0 0 chr4 120572294 120572424 -35057696 + (TC)n Simple_repeat Simple_repeat 2 131 0 1 1504 387 0 0 0 chr4 120572424 120572466 -35057654 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1504 251 266 96 52 chr4 120572466 120572491 -35057629 + ORR1D1 LTR MaLR 135 158 -168 1 1504 430 179 0 0 chr4 120572498 120572575 -35057545 + B4 SINE B4 3 79 -213 1 1504 1322 273 87 15 chr4 120572575 120572966 -35057154 - MTD LTR MaLR 0 419 1 1 1504 317 215 24 48 chr4 120572975 120573058 -35057062 + RSINE1 SINE B4 83 163 -2 1 1504 1216 170 19 9 chr4 120573297 120573511 -35056609 + B3 SINE B2 1 216 0 1 1504 834 206 139 26 chr4 120573528 120573722 -35056398 - B3 SINE B2 0 216 1 1 1504 240 303 0 0 chr4 120573743 120573809 -35056311 + L1M5 LINE L1 4548 4613 -1533 1 1504 648 0 0 0 chr4 120574332 120574404 -35055716 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1504 441 285 22 37 chr4 120574507 120574642 -35055478 - RSINE1 SINE B4 0 165 33 1 1504 826 274 39 0 chr4 120574939 120575143 -35054977 - B3 SINE B2 -4 212 1 1 1504 2001 162 3 6 chr4 120575301 120575630 -35054490 - ORR1A1 LTR MaLR 0 346 19 1 1504 820 302 135 3 chr4 120575684 120575980 -35054140 + MER2 DNA MER2_type 2 336 -9 1 1504 586 165 31 0 chr4 120576065 120576162 -35053958 + U6 snRNA snRNA 2 101 -6 1 1504 717 218 7 13 chr4 120576371 120576520 -35053600 + B1F SINE Alu 1 148 -1 1 1504 653 114 9 0 chr4 120576520 120576625 -35053495 + (GA)n Simple_repeat Simple_repeat 1 106 0 1 1504 1316 73 45 0 chr4 120576625 120576803 -35053317 + B2_Mm1t SINE B2 1 186 -7 1 1504 243 0 0 0 chr4 120576870 120576897 -35053223 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1504 474 18 0 0 chr4 120576897 120576951 -35053169 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1504 883 177 7 0 chr4 120576975 120577122 -35052998 + B1_Mur3 SINE Alu 1 148 -1 1 1504 343 306 72 0 chr4 120577125 120577236 -35052884 + L1M5 LINE L1 5300 5418 -761 1 1504 411 279 46 15 chr4 120577269 120577400 -35052720 + L1M5 LINE L1 5532 5666 -667 1 1504 5643 52 31 1 chr4 120577410 120578123 -35051997 + L1VL2 LINE L1 284 1017 -5318 1 1504 13399 78 34 4 chr4 120578575 120580494 -35049626 + MusHAL1 LINE L1 109 2085 -627 2 1504 28 48 0 0 chr4 120581329 120581371 -35048749 + AT_rich Low_complexity Low_complexity 1 42 0 2 1504 258 154 0 37 chr4 120581371 120581425 -35048695 + B1_Mur1 SINE Alu 97 148 -1 2 1504 719 112 0 8 chr4 120581459 120581576 -35048544 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 2 1504 248 300 29 0 chr4 120581755 120581825 -35048295 - B1F SINE Alu 0 149 78 2 1504 397 223 219 48 chr4 120581871 120581892 -35048228 + ID_B1 SINE B4 81 157 -135 2 1504 500 186 20 30 chr4 120581892 120581992 -35048128 + PB1D10 SINE Alu 14 112 -5 2 1504 397 223 219 48 chr4 120581992 120582014 -35048106 + ID_B1 SINE B4 158 249 -43 2 1504 322 152 0 0 chr4 120582075 120582121 -35047999 + ID4_ SINE ID 18 63 -20 2 1504 374 222 130 0 chr4 120582556 120582664 -35047456 - LTR41B LTR ERVL -559 199 78 2 1504 528 105 0 13 chr4 120582724 120582801 -35047319 + URR1B DNA MER1_type 149 224 -1 2 1504 257 200 94 103 chr4 120582950 120583067 -35047053 + L1ME2z LINE L1 5839 5954 -490 2 1504 495 274 0 71 chr4 120583096 120583222 -35046898 + PB1D10 SINE Alu 1 117 0 2 1504 516 131 57 1 chr4 120583425 120583520 -35046600 - MTC LTR MaLR -298 109 12 2 1504 180 0 0 0 chr4 120583520 120583540 -35046580 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 2 1504 630 211 61 14 chr4 120583643 120583782 -35046338 + B1_Mur1 SINE Alu 2 145 -4 2 1504 764 188 20 14 chr4 120584143 120584289 -35045831 + B1_Mur1 SINE Alu 1 147 -2 2 1504 536 194 167 0 chr4 120584318 120584426 -35045694 + ID_B1 SINE B4 83 208 -16 2 1504 487 192 0 0 chr4 120584513 120584591 -35045529 + ID4_ SINE ID 3 80 -3 2 1504 303 170 19 0 chr4 120584858 120584911 -35045209 - B3 SINE B2 -162 54 1 2 1504 493 161 0 24 chr4 120584996 120585079 -35045041 + B4A SINE B4 149 229 -63 2 1504 868 192 0 7 chr4 120585079 120585226 -35044894 + B1_Mus2 SINE Alu 1 146 -1 2 1504 180 0 0 0 chr4 120585250 120585270 -35044850 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1504 544 291 31 29 chr4 120585350 120585575 -35044545 + L1MB2 LINE L1 5392 5632 -551 2 1504 1436 174 119 40 chr4 120585580 120585932 -35044188 + RMER13A LTR ERVK 1 380 -480 2 1504 573 15 0 0 chr4 120585932 120585998 -35044122 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 2 1504 763 251 161 33 chr4 120585998 120586079 -35044041 + RMER13A LTR ERVK 414 519 -389 2 1505 870 276 50 25 chr4 120586382 120586661 -35043459 + L1MB2 LINE L1 5636 5921 -250 2 1505 781 237 72 10 chr4 120587062 120587271 -35042849 - ID_B1 SINE B4 -2 222 1 2 1505 329 281 103 52 chr4 120587361 120587594 -35042526 - ORR1E LTR MaLR -11 348 104 2 1505 240 157 222 28 chr4 120588200 120588272 -35041848 + 4.5SRNA scRNA scRNA 1 86 -8 2 1505 669 174 9 9 chr4 120588215 120588331 -35041789 + B1_Mur4 SINE Alu 35 150 0 2 1505 606 118 0 0 chr4 120588356 120588449 -35041671 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 2 1505 28 0 0 0 chr4 120589169 120589197 -35040923 + AT_rich Low_complexity Low_complexity 1 28 0 2 1505 603 212 6 88 chr4 120589197 120589357 -35040763 - B1_Mus1 SINE Alu 0 148 2 2 1505 383 240 57 107 chr4 120589357 120589394 -35040726 - MT2B LTR ERVL -446 155 126 2 1505 287 227 30 15 chr4 120589382 120589449 -35040671 + RSINE1 SINE B4 12 79 -86 2 1505 606 207 0 0 chr4 120589500 120589611 -35040509 + RSINE1 SINE B4 38 148 -17 2 1505 1164 136 11 0 chr4 120589753 120589930 -35040190 + B2_Mm2 SINE B2 2 180 -15 2 1505 231 36 0 0 chr4 120589953 120589981 -35040139 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1505 854 204 46 41 chr4 120590019 120590213 -35039907 - MTB_Mm LTR MaLR -212 195 1 2 1505 217 247 86 99 chr4 120590477 120590558 -35039562 - ID4 SINE ID -1 82 3 2 1505 394 244 0 11 chr4 120590579 120590670 -35039450 - PB1D9 SINE Alu -1 119 30 2 1505 311 316 26 26 chr4 120590695 120590812 -35039308 - PB1D10 SINE Alu 0 117 1 2 1505 375 146 0 0 chr4 120590839 120590894 -35039226 - MTD LTR MaLR 0 419 365 2 1505 817 268 55 45 chr4 120590918 120591113 -35039007 - B4A SINE B4 0 292 96 2 1505 294 73 0 0 chr4 120591113 120591154 -35038966 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1505 1222 36 0 0 chr4 120591154 120591294 -35038826 - B1_Mus1 SINE Alu -8 140 1 2 1505 817 268 55 45 chr4 120591294 120591386 -35038734 - B4A SINE B4 -197 95 2 2 1505 218 114 250 0 chr4 120591455 120591499 -35038621 - RSINE1 SINE B4 -33 132 78 2 1505 656 271 60 48 chr4 120591610 120591924 -35038196 + RLTR15 LTR ERVK 42 359 0 2 1505 4262 101 107 66 chr4 120591927 120592635 -35037485 - RMER19A LTR ERVK 0 737 1 2 1505 273 240 119 37 chr4 120593415 120593549 -35036571 - L1M5 LINE L1 -395 5767 5623 2 1505 337 207 17 0 chr4 120595390 120595448 -35034672 - BC1_Mm scRNA scRNA -74 78 20 2 1505 840 62 18 0 chr4 120595666 120595779 -35034341 - B1_Mus1 SINE Alu -9 139 25 2 1505 405 0 0 0 chr4 120596081 120596126 -35033994 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1505 396 0 0 0 chr4 120596126 120596169 -35033951 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1505 249 163 0 0 chr4 120596169 120596212 -35033908 - B1_Mus2 SINE Alu -16 131 89 2 1505 255 143 23 23 chr4 120596209 120596252 -35033868 - B1_Mus1 SINE Alu -104 44 2 2 1505 1598 51 0 5 chr4 120596282 120596478 -35033642 - B2_Mm2 SINE B2 0 195 1 2 1505 26 74 0 0 chr4 120596509 120596563 -35033557 + AT_rich Low_complexity Low_complexity 1 54 0 2 1505 1219 35 14 0 chr4 120596739 120596884 -35033236 - B1_Mus2 SINE Alu 0 147 1 2 1505 265 270 40 26 chr4 120597982 120598058 -35032062 - B1F2 SINE Alu -70 79 3 2 1505 819 198 119 0 chr4 120598090 120598267 -35031853 - B3 SINE B2 -4 212 15 2 1505 180 0 0 0 chr4 120598486 120598506 -35031614 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1505 267 54 0 0 chr4 120598623 120598660 -35031460 + (C)n Simple_repeat Simple_repeat 1 37 0 2 1505 1880 68 147 4 chr4 120599113 120599392 -35030728 - ORR1A4 LTR MaLR -10 319 1 2 1505 871 126 0 0 chr4 120599551 120599678 -35030442 - URR1A DNA MER1_type -19 207 81 2 1505 3618 20 0 0 chr4 120599771 120600167 -35029953 + MTA_Mm LTR MaLR 1 396 0 2 1505 3383 46 5 9 chr4 120600167 120600604 -35029516 + MTA_Mm-int LTR MaLR 1 435 -663 2 1505 756 12 0 0 chr4 120600595 120600681 -35029439 + MTA_Mm LTR MaLR 311 396 0 2 1505 490 256 7 65 chr4 120600859 120600997 -35029123 + RMER10B LTR ERVL 269 398 0 2 1505 196 306 152 9 chr4 120601255 120601367 -35028753 - L2 LINE L2 -960 2459 2332 2 1505 298 351 17 26 chr4 120601541 120601658 -35028462 - RMER30 DNA MER1_type -7 195 80 2 1505 434 229 235 8 chr4 120601733 120601852 -35028268 - B3A SINE B2 -52 146 1 2 1505 357 296 12 29 chr4 120601963 120602076 -35028044 + PB1D10 SINE Alu 1 121 -6 2 1505 962 238 4 26 chr4 120602098 120602327 -35027793 + ID_B1 SINE B4 1 224 0 2 1505 507 266 38 30 chr4 120602554 120602686 -35027434 - RSINE1 SINE B4 -29 136 4 2 1505 228 339 69 8 chr4 120602705 120602836 -35027284 + Charlie18a DNA MER1_type 1 139 -203 2 1505 337 301 21 21 chr4 120603224 120603530 -35026590 - MMSAT4 Satellite Satellite 0 306 1 2 1505 1212 61 0 0 chr4 120604486 120604633 -35025487 + B1_Mm SINE Alu 1 147 0 2 1505 888 82 66 15 chr4 120604752 120604888 -35025232 + B1_Mur4 SINE Alu 8 150 0 2 1505 370 227 82 0 chr4 120605261 120605371 -35024749 - ID_B1 SINE B4 -13 211 93 2 1505 375 229 0 98 chr4 120605681 120605773 -35024347 + PB1D7 SINE Alu 36 118 -2 2 1505 323 260 94 88 chr4 120605785 120605945 -35024175 + L1M5 LINE L1 4300 4460 -1686 2 1505 214 270 43 87 chr4 120605981 120606050 -35024070 - B1F2 SINE Alu -60 89 24 2 1505 366 23 0 0 chr4 120606336 120606379 -35023741 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1505 625 287 7 26 chr4 120606382 120606536 -35023584 - RSINE1 SINE B4 -12 153 3 2 1505 726 269 104 79 chr4 120607329 120607607 -35022513 + MTE2a LTR MaLR 1 285 -94 2 1505 288 325 8 8 chr4 120607682 120607809 -35022311 - MurSatRep1 Unknown Unknown -1409 728 602 2 1505 2047 117 12 15 chr4 120608761 120609099 -35021021 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1505 42437 23 6 1 chr4 120609103 120615528 -35014592 - IAPEz-int LTR ERVK -3 6478 8 2 1505 2037 117 12 15 chr4 120615528 120615866 -35014254 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1505 826 274 73 23 chr4 120615995 120616407 -35013713 - Lx7 LINE L1 -1800 5896 5393 2 1505 189 74 0 0 chr4 120616414 120616441 -35013679 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1505 968 84 51 19 chr4 120616469 120616627 -35013493 + B2_Mm2 SINE B2 24 186 -9 2 1505 1364 93 16 0 chr4 120616660 120616843 -35013277 + B2_Mm2 SINE B2 1 186 -9 2 1505 785 210 12 0 chr4 120616843 120617005 -35013115 - B3 SINE B2 -21 195 32 2 1505 266 148 19 0 chr4 120617367 120617421 -35012699 + GA-rich Low_complexity Low_complexity 1 55 0 2 1505 600 118 136 0 chr4 120617529 120617639 -35012481 + B1_Mus2 SINE Alu 23 147 0 2 1505 594 212 135 68 chr4 120617775 120617982 -35012138 + ID_B1 SINE B4 1 221 -3 2 1505 1245 34 0 0 chr4 120618103 120618249 -35011871 + B1_Mus1 SINE Alu 1 146 -2 2 1505 216 0 0 0 chr4 120618249 120618273 -35011847 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 1505 1350 72 0 97 chr4 120618414 120618630 -35011490 - B2_Mm2 SINE B2 0 195 1 2 1505 1146 81 0 0 chr4 120618752 120618900 -35011220 - B1_Mus1 SINE Alu 0 148 1 2 1505 564 204 227 0 chr4 120618906 120619082 -35011038 - B3 SINE B2 0 216 1 2 1505 237 236 8 159 chr4 120619084 120619210 -35010910 - PB1D10 SINE Alu -1 116 10 2 1505 452 291 78 44 chr4 120619391 120619596 -35010524 - B4A SINE B4 -75 217 6 2 1505 278 261 32 11 chr4 120620260 120620353 -35009767 - PB1D9 SINE Alu -25 95 1 3 1505 260 130 65 0 chr4 120620356 120620402 -35009718 - PB1D7 SINE Alu 0 120 72 3 1505 321 26 0 0 chr4 120620473 120620511 -35009609 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1505 1185 54 0 26 chr4 120620511 120620662 -35009458 - B1_Mm SINE Alu 0 147 1 3 1505 365 284 73 0 chr4 120620958 120621067 -35009053 + B1F2 SINE Alu 2 118 -31 3 1505 1231 51 0 0 chr4 120621155 120621313 -35008807 + B2_Mm2 SINE B2 2 159 -36 3 1505 285 29 0 0 chr4 120621317 120621351 -35008769 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 3 1505 801 206 7 0 chr4 120622270 120622416 -35007704 - B1_Mus2 SINE Alu 0 147 1 3 1505 640 265 0 0 chr4 120622438 120622589 -35007531 - RSINE1 SINE B4 -2 163 13 3 1505 280 194 49 0 chr4 120622935 120623009 -35007111 + MIRb SINE MIR 99 183 -85 3 1505 1334 86 37 11 chr4 120623105 120623293 -35006827 + B2_Mm2 SINE B2 2 194 -1 3 1505 245 208 0 0 chr4 120623324 120623372 -35006748 - RSINE1 SINE B4 -37 128 81 3 1505 354 215 10 106 chr4 120624727 120624831 -35005289 - MLT1B LTR MaLR 0 390 297 3 1505 516 16 0 0 chr4 120625222 120625283 -35004837 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1505 332 164 0 0 chr4 120626045 120626100 -35004020 + B1_Mur4 SINE Alu 2 56 -94 3 1505 474 132 0 0 chr4 120626102 120626178 -35003942 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 1505 270 0 0 0 chr4 120626252 120626282 -35003838 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1505 315 0 0 0 chr4 120626282 120626316 -35003804 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1505 252 195 130 0 chr4 120626351 120626428 -35003692 + L1MEg LINE L1 1775 1861 -4223 3 1505 504 0 0 0 chr4 120626737 120626793 -35003327 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 3 1505 1192 41 7 0 chr4 120626793 120626939 -35003181 - B1_Mus2 SINE Alu 0 147 1 3 1505 408 67 0 0 chr4 120626978 120627038 -35003082 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1505 607 271 24 168 chr4 120627204 120627532 -35002588 - B4 SINE B4 -7 285 5 3 1505 281 200 40 13 chr4 120627534 120627610 -35002510 - L1MB2 LINE L1 -31 6140 6063 3 1505 530 269 30 7 chr4 120628038 120628173 -35001947 - RSINE1 SINE B4 -21 144 7 3 1505 180 0 0 0 chr4 120628183 120628203 -35001917 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1505 410 341 14 0 chr4 120628203 120628341 -35001779 - B1F SINE Alu -7 142 3 3 1505 180 0 0 0 chr4 120628621 120628641 -35001479 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1505 314 262 118 46 chr4 120628700 120628852 -35001268 - RSINE1 SINE B4 -2 163 1 3 1505 180 0 0 0 chr4 120628889 120628909 -35001211 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1505 592 179 6 190 chr4 120628931 120629110 -35001010 + B1_Mus2 SINE Alu 2 147 0 3 1505 308 33 31 47 chr4 120629118 120629182 -35000938 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 1505 547 312 0 6 chr4 120629384 120629545 -35000575 - B4 SINE B4 -76 216 57 3 1505 312 27 0 0 chr4 120629694 120629731 -35000389 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 3 1505 249 130 22 0 chr4 120629877 120629923 -35000197 - B1F1 SINE Alu -91 58 12 3 1505 329 159 261 0 chr4 120629993 120630081 -35000039 + ID_B1 SINE B4 114 224 0 3 1505 398 262 38 0 chr4 120630381 120630461 -34999659 + B1F1 SINE Alu 7 89 -60 3 1505 358 266 17 44 chr4 120630579 120630760 -34999360 + (CATA)n Simple_repeat Simple_repeat 2 177 0 3 1505 22 0 0 0 chr4 120630795 120630817 -34999303 + AT_rich Low_complexity Low_complexity 1 22 0 3 1505 200 149 21 0 chr4 120631198 120631245 -34998875 + CT-rich Low_complexity Low_complexity 2 49 0 3 1505 459 146 34 0 chr4 120631251 120631340 -34998780 - PB1D9 SINE Alu -12 108 17 3 1505 29 78 0 0 chr4 120631620 120631684 -34998436 + AT_rich Low_complexity Low_complexity 1 64 0 3 1505 320 187 220 0 chr4 120631830 120631921 -34998199 + PB1D10 SINE Alu 2 112 -5 3 1505 270 0 0 0 chr4 120631961 120631991 -34998129 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1505 423 0 0 0 chr4 120631991 120632037 -34998083 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1505 424 292 38 9 chr4 120632060 120632217 -34997903 + LTR16C LTR ERVL 342 532 -6 3 1505 254 299 126 0 chr4 120632551 120632638 -34997482 - PB1D7 SINE Alu -5 115 18 3 1505 3418 175 138 15 chr4 120632946 120633739 -34996381 + RMER19B LTR ERVK 1 890 -12 3 1505 288 308 154 0 chr4 120634011 120634128 -34995992 + HAL1 LINE L1 574 708 -1799 3 1505 255 202 187 22 chr4 120634455 120634546 -34995574 - ERVL-E-int LTR ERVL -4067 1600 1495 3 1505 863 171 141 16 chr4 120634635 120634819 -34995301 - B3 SINE B2 -4 212 6 3 1505 858 218 52 5 chr4 120634887 120635081 -34995039 - ID_B1 SINE B4 -7 217 15 3 1505 604 232 48 24 chr4 120635573 120635741 -34994379 + B3 SINE B2 38 209 -7 3 1505 752 203 31 19 chr4 120636009 120636170 -34993950 - RSINE1 SINE B4 0 165 3 3 1505 306 148 0 0 chr4 120636192 120636246 -34993874 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 3 1505 243 0 0 0 chr4 120636298 120636325 -34993795 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1505 489 226 0 0 chr4 120636410 120636512 -34993608 + PB1D10 SINE Alu 9 110 -7 3 1505 706 302 118 11 chr4 120636662 120637017 -34993103 - L1ME3B LINE L1 -362 5878 5486 3 1505 194 105 26 0 chr4 120637049 120637087 -34993033 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1505 212 264 125 0 chr4 120637133 120637205 -34992915 - B1F2 SINE Alu -55 94 14 3 1505 331 169 138 0 chr4 120637385 120637450 -34992670 - ID2 SINE ID -6 77 4 3 1505 207 167 0 0 chr4 120637634 120637676 -34992444 + (CATG)n Simple_repeat Simple_repeat 3 44 0 3 1505 774 81 16 8 chr4 120637941 120638066 -34992054 + B1_Mm SINE Alu 1 126 -21 3 1505 681 244 0 0 chr4 120638066 120638242 -34991878 + GA-rich Low_complexity Low_complexity 1 176 0 3 1505 222 37 0 0 chr4 120638244 120638271 -34991849 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 3 1505 213 280 82 51 chr4 120639419 120639517 -34990603 + L2c LINE L2 3060 3160 -227 3 1505 471 264 2 26 chr4 120642676 120642816 -34987304 - B1F2 SINE Alu -3 146 10 3 1505 189 0 0 0 chr4 120643080 120643101 -34987019 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1505 1318 80 17 6 chr4 120643462 120643639 -34986481 + B2_Mm2 SINE B2 2 180 -15 3 1505 369 0 0 0 chr4 120643645 120643686 -34986434 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1505 366 23 0 0 chr4 120643686 120643728 -34986392 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1505 628 143 152 45 chr4 120643780 120643912 -34986208 + B1_Mur4 SINE Alu 5 150 0 3 1505 348 254 80 49 chr4 120645402 120645624 -34984496 - L1MA6 LINE L1 -1658 5986 5762 3 1505 326 230 158 10 chr4 120646062 120646163 -34983957 + B1F SINE Alu 1 116 -33 3 1505 255 61 0 0 chr4 120646467 120646500 -34983620 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1505 852 240 38 19 chr4 120648444 120648656 -34981464 + B3 SINE B2 1 216 0 3 1505 387 246 175 32 chr4 120648958 120649084 -34981036 + B1_Mur2 SINE Alu 1 144 -5 3 1505 1224 101 0 0 chr4 120649089 120649267 -34980853 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1505 214 294 0 0 chr4 120649288 120649339 -34980781 + G-rich Low_complexity Low_complexity 3 53 0 3 1505 346 306 36 9 chr4 120649978 120650090 -34980030 + PB1D10 SINE Alu 1 115 -2 3 1505 357 133 0 0 chr4 120650132 120650192 -34979928 - B3A SINE B2 -136 62 3 3 1505 1169 128 32 11 chr4 120650312 120650501 -34979619 + B2_Mm2 SINE B2 3 195 0 3 1505 784 110 27 0 chr4 120650501 120650647 -34979473 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 3 1505 519 213 87 0 chr4 120650662 120650789 -34979331 + B1F2 SINE Alu 2 139 -10 3 1505 453 306 7 36 chr4 120651187 120651326 -34978794 - ID_B1 SINE B4 -6 218 84 3 1505 21 0 0 0 chr4 120651366 120651387 -34978733 + AT_rich Low_complexity Low_complexity 1 21 0 3 1505 748 153 32 0 chr4 120651411 120651535 -34978585 + B1F2 SINE Alu 20 147 -2 3 1505 1388 75 37 5 chr4 120651730 120651918 -34978202 + B2_Mm2 SINE B2 2 195 0 3 1505 279 179 0 0 chr4 120651986 120652053 -34978067 + GA-rich Low_complexity Low_complexity 2 68 0 3 1505 372 224 129 0 chr4 120652053 120652138 -34977982 - B1F1 SINE Alu -53 96 1 3 1505 342 0 0 0 chr4 120652502 120652540 -34977580 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1505 504 0 0 0 chr4 120652611 120652667 -34977453 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1505 476 317 18 35 chr4 120652679 120652849 -34977271 - B3A SINE B2 -30 168 2 3 1505 713 224 28 0 chr4 120653110 120653253 -34976867 - B1_Mur3 SINE Alu 0 149 3 3 1505 409 215 24 94 chr4 120653253 120653300 -34976820 - MT2B LTR ERVL -429 155 115 3 1505 379 143 43 0 chr4 120653342 120653412 -34976708 + ID4_ SINE ID 7 79 -4 3 1505 573 273 70 0 chr4 120653858 120654001 -34976119 + RSINE1 SINE B4 2 154 -11 3 1505 288 227 237 0 chr4 120654078 120654175 -34975945 + PB1D9 SINE Alu 1 120 0 3 1505 432 0 0 0 chr4 120654359 120654407 -34975713 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3 1505 575 196 104 8 chr4 120654446 120654580 -34975540 - B1_Mur1 SINE Alu -2 147 1 3 1505 352 281 0 0 chr4 120656194 120656276 -34973844 - ID2 SINE ID 0 83 2 4 1505 1032 225 65 99 chr4 120656363 120656747 -34973373 + MTE2a LTR MaLR 7 377 -2 4 1505 215 277 14 97 chr4 120657119 120657191 -34972929 + ID4_ SINE ID 4 69 -14 4 1505 269 333 0 24 chr4 120657235 120657318 -34972802 - ID4 SINE ID -1 82 2 4 1505 232 264 107 40 chr4 120657446 120657521 -34972599 + PB1D7 SINE Alu 18 97 -23 4 1505 456 243 103 0 chr4 120657539 120657646 -34972474 + PB1D9 SINE Alu 2 119 -1 4 1505 484 293 63 63 chr4 120658101 120658323 -34971797 - L1MB7 LINE L1 -60 6124 5903 4 1505 452 294 24 48 chr4 120659558 120659726 -34970394 + RSINE1 SINE B4 2 165 0 4 1505 288 257 28 14 chr4 120660271 120660342 -34969778 + ID4 SINE ID 2 73 -10 4 1505 308 301 125 7 chr4 120660377 120660521 -34969599 + MIR SINE MIR 6 166 -96 4 1505 371 284 27 9 chr4 120660706 120660816 -34969304 - PB1D9 SINE Alu -8 112 1 4 1505 27 0 0 0 chr4 120660828 120660855 -34969265 + AT_rich Low_complexity Low_complexity 1 27 0 4 1505 1175 30 0 0 chr4 120661700 120661835 -34968285 + B1_Mus1 SINE Alu 1 135 -13 4 1505 267 31 0 0 chr4 120661836 120661868 -34968252 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1505 1087 241 0 0 chr4 120661876 120662092 -34968028 - B3 SINE B2 0 216 1 4 1505 486 283 169 11 chr4 120662098 120662287 -34967833 - ID_B1 SINE B4 -5 219 1 4 1505 241 324 0 0 chr4 120662405 120662479 -34967641 - ID4_ SINE ID -8 75 2 4 1505 377 221 9 96 chr4 120662659 120662774 -34967346 - PB1D10 SINE Alu 0 117 13 4 1505 977 142 0 69 chr4 120663500 120663689 -34966431 + B2_Mm2 SINE B2 2 177 -18 4 1505 266 194 347 0 chr4 120663738 120663810 -34966310 + PB1D10 SINE Alu 2 98 -19 4 1505 207 0 0 0 chr4 120663877 120663900 -34966220 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1505 471 189 189 0 chr4 120664101 120664223 -34965897 + B1_Mur2 SINE Alu 5 149 0 4 1505 298 266 0 0 chr4 120664719 120664798 -34965322 - ID4 SINE ID -1 82 4 4 1505 320 307 169 39 chr4 120664844 120665098 -34965022 - MTE2a LTR MaLR 0 379 93 4 1505 536 279 140 0 chr4 120665203 120665339 -34964781 + RSINE1 SINE B4 9 163 -2 4 1505 659 215 7 7 chr4 120665486 120665622 -34964498 + MTD LTR MaLR 5 140 -279 4 1505 717 239 68 19 chr4 120665994 120666199 -34963921 + B3 SINE B2 2 216 0 4 1505 206 362 113 30 chr4 120666219 120666289 -34963831 - L3 LINE CR1 -17 4472 4400 4 1505 818 158 109 86 chr4 120666289 120666510 -34963610 + URR1A DNA MER1_type 1 226 0 4 1505 206 362 113 30 chr4 120666510 120666607 -34963513 - L3 LINE CR1 -90 4399 4292 4 1505 198 259 291 12 chr4 120667353 120667439 -34962681 + MIR3 SINE MIR 76 185 -23 4 1505 213 344 86 0 chr4 120667516 120667609 -34962511 + PB1D10 SINE Alu 17 117 0 4 1505 245 259 0 0 chr4 120667645 120667699 -34962421 + ID4_ SINE ID 19 72 -11 4 1505 231 270 0 87 chr4 120667648 120667717 -34962403 + ID SINE ID 23 85 -139 4 1505 798 182 7 7 chr4 120667753 120667891 -34962229 + B1_Mur4 SINE Alu 3 140 -10 4 1505 243 0 0 0 chr4 120667891 120667918 -34962202 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1505 517 211 44 0 chr4 120668959 120669073 -34961047 - PB1D9 SINE Alu 0 120 2 4 1505 346 294 6 31 chr4 120669098 120669217 -34960903 + PB1D10 SINE Alu 2 120 0 4 1505 186 43 0 0 chr4 120670039 120670062 -34960058 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1505 180 125 0 0 chr4 120670065 120670097 -34960023 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 4 1505 1012 136 0 7 chr4 120670152 120670300 -34959820 + B1_Mur3 SINE Alu 1 147 -2 4 1505 591 307 75 74 chr4 120670319 120670615 -34959505 + B4 SINE B4 1 272 -20 4 1505 366 326 31 0 chr4 120670691 120670789 -34959331 + PB1D10 SINE Alu 1 101 -16 4 1505 481 200 368 0 chr4 120670822 120670977 -34959143 + B3 SINE B2 2 213 -3 4 1505 1604 139 49 61 chr4 120670980 120671274 -34958846 - RMER1C Other Other -3 1339 1049 4 1505 1661 36 0 0 chr4 120671274 120671466 -34958654 - B2_Mm1a SINE B2 0 193 2 4 1505 1604 139 49 61 chr4 120671466 120671516 -34958604 - RMER1C Other Other -294 1048 999 4 1505 30 59 0 0 chr4 120671516 120671567 -34958553 + AT_rich Low_complexity Low_complexity 1 51 0 4 1505 811 153 22 22 chr4 120672201 120672335 -34957785 + B1_Mus1 SINE Alu 3 136 -12 4 1505 444 51 0 0 chr4 120672335 120672394 -34957726 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 4 1505 648 162 188 0 chr4 120672395 120672592 -34957528 + Lx9 LINE L1 7408 7641 -3 4 1505 612 222 124 60 chr4 120673168 120673369 -34956751 + MER20 DNA MER1_type 6 219 0 4 1505 914 228 5 21 chr4 120673764 120673957 -34956163 - B3 SINE B2 -6 210 21 4 1505 272 312 104 0 chr4 120674028 120674124 -34955996 - MIR3 SINE MIR 0 208 103 4 1505 234 128 0 0 chr4 120675939 120675978 -34954142 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1505 799 200 14 20 chr4 120677026 120677174 -34952946 + B1_Mur3 SINE Alu 2 148 -1 4 1505 272 27 27 0 chr4 120677195 120677232 -34952888 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1505 1206 203 67 35 chr4 120677511 120677885 -34952235 + MTD LTR MaLR 2 398 -2 4 1505 456 123 0 0 chr4 120678150 120678223 -34951897 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 4 1505 468 328 8 0 chr4 120678782 120678913 -34951207 + ID_B1 SINE B4 82 213 -11 4 1505 22 56 0 0 chr4 120678921 120678957 -34951163 + AT_rich Low_complexity Low_complexity 1 36 0 4 1505 387 271 27 27 chr4 120678961 120679109 -34951011 + B1F1 SINE Alu 1 148 -1 4 1505 646 137 59 22 chr4 120679541 120679677 -34950443 - B1_Mur3 SINE Alu 0 149 29 4 1505 388 343 102 27 chr4 120679908 120680055 -34950065 + LTR33A LTR ERVL 14 171 -349 4 1505 31 26 0 0 chr4 120680296 120680334 -34949786 + AT_rich Low_complexity Low_complexity 1 38 0 4 1505 265 257 161 27 chr4 120680407 120680519 -34949601 - L2a LINE L2 0 3426 3300 4 1505 1403 70 11 21 chr4 120680562 120680753 -34949367 + B2_Mm1a SINE B2 1 189 -4 4 1505 804 312 10 19 chr4 120680768 120680974 -34949146 + ID_B1 SINE B4 5 208 -16 4 1505 282 205 0 33 chr4 120680975 120681066 -34949054 + GA-rich Low_complexity Low_complexity 1 88 0 4 1505 365 278 9 61 chr4 120681081 120681196 -34948924 + PB1D10 SINE Alu 1 109 -8 4 1505 530 250 59 22 chr4 120681201 120681336 -34948784 + B1F2 SINE Alu 2 141 -8 4 1505 195 100 0 0 chr4 120682445 120682475 -34947645 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1505 236 299 101 18 chr4 120682657 120682766 -34947354 + L2a LINE L2 3275 3392 -34 4 1505 1239 42 0 0 chr4 120682772 120682916 -34947204 - B1_Mus2 SINE Alu -2 145 2 4 1505 236 278 0 89 chr4 120682954 120683033 -34947087 - PB1D10 SINE Alu 0 117 46 4 1505 306 0 0 0 chr4 120683052 120683086 -34947034 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1505 589 274 19 25 chr4 120683594 120683755 -34946365 + RSINE1 SINE B4 3 162 -3 4 1505 252 0 0 0 chr4 120683762 120683790 -34946330 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1505 21 36 0 0 chr4 120684073 120684101 -34946019 + AT_rich Low_complexity Low_complexity 1 28 0 4 1505 824 128 128 0 chr4 120684117 120684250 -34945870 + B1_Mur4 SINE Alu 1 150 0 4 1505 987 194 42 51 chr4 120684261 120684478 -34945642 - B3 SINE B2 0 216 2 4 1505 516 292 102 16 chr4 120684812 120685066 -34945054 + B4A SINE B4 1 276 -16 4 1505 478 248 46 0 chr4 120685146 120685255 -34944865 + B1F2 SINE Alu 33 146 -3 4 1505 231 279 61 96 chr4 120685262 120685377 -34944743 + ID_B1 SINE B4 81 191 -33 4 1505 511 153 207 43 chr4 120686144 120686260 -34943860 - ID_B1 SINE B4 -9 215 81 4 1505 723 199 20 33 chr4 120686279 120686430 -34943690 - B1_Mur4 SINE Alu 0 150 2 4 1505 672 265 70 11 chr4 120686623 120686810 -34943310 + B3A SINE B2 1 198 0 4 1505 380 160 89 51 chr4 120686862 120686941 -34943179 + RSINE1 SINE B4 8 89 -76 4 1505 276 30 0 0 chr4 120686951 120686984 -34943136 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1505 31 26 0 0 chr4 120686984 120687022 -34943098 + AT_rich Low_complexity Low_complexity 1 38 0 4 1505 797 263 0 0 chr4 120687625 120687777 -34942343 - RSINE1 SINE B4 -12 153 2 4 1505 363 60 0 0 chr4 120689123 120689173 -34940947 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1505 25 51 0 0 chr4 120689305 120689344 -34940776 + GC_rich Low_complexity Low_complexity 1 39 0 4 1505 446 254 17 17 chr4 120690075 120690195 -34939925 - MIR SINE MIR -3 259 140 4 1505 648 182 83 8 chr4 120690432 120690565 -34939555 - B1_Mur1 SINE Alu -5 144 2 4 1505 509 106 24 0 chr4 120690580 120690665 -34939455 + (CGTG)n Simple_repeat Simple_repeat 1 87 0 4 1505 732 246 0 11 chr4 120690667 120690844 -34939276 - B3A SINE B2 -16 182 8 4 1505 204 91 91 0 chr4 120691204 120691259 -34938861 + (TTATA)n Simple_repeat Simple_repeat 1 60 0 4 1505 779 169 8 0 chr4 120691436 120691566 -34938554 - B1_Mur1 SINE Alu 0 149 19 4 1505 360 200 34 118 chr4 120691471 120691590 -34938530 - MT2B LTR ERVL -337 264 156 4 1505 330 276 65 80 chr4 120691587 120691725 -34938395 - B3 SINE B2 0 216 81 4 1505 484 373 34 30 chr4 120691811 120692046 -34938074 + MIR SINE MIR 4 239 -23 4 1505 234 0 0 0 chr4 120692385 120692411 -34937709 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1505 590 293 24 24 chr4 120692488 120692660 -34937460 + ID_B1 SINE B4 80 246 -46 5 1505 181 254 15 60 chr4 120693039 120693106 -34937014 - L2c LINE L2 -357 3030 2967 5 1505 675 269 26 19 chr4 120693896 120694162 -34935958 + L1MC4 LINE L1 1435 1669 -906 5 1505 431 165 12 0 chr4 120694171 120694256 -34935864 + CT-rich Low_complexity Low_complexity 1 86 0 5 1505 969 101 29 17 chr4 120694256 120694428 -34935692 + (TTTTC)n Simple_repeat Simple_repeat 5 178 0 5 1505 267 104 0 0 chr4 120694908 120694956 -34935164 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1505 1009 205 51 0 chr4 120695290 120695485 -34934635 - B3 SINE B2 -11 205 1 5 1505 643 182 16 40 chr4 120695515 120695641 -34934479 - RSINE1 SINE B4 -40 125 3 5 1505 782 257 41 18 chr4 120695682 120695900 -34934220 - ID_B1 SINE B4 -1 223 1 5 1505 318 320 111 17 chr4 120695901 120696073 -34934047 - MLT1L LTR MaLR -6 604 417 5 1505 301 220 0 0 chr4 120696087 120696146 -34933974 + MER5A DNA MER1_type 18 76 -113 5 1505 684 230 6 90 chr4 120696202 120696379 -34933741 + RSINE1 SINE B4 3 164 -1 5 1505 594 79 0 0 chr4 120696379 120696468 -34933652 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 5 1505 593 211 46 23 chr4 120697067 120697198 -34932922 - ID_B1 SINE B4 0 224 91 5 1505 381 253 0 13 chr4 120697247 120697323 -34932797 + RSINE1 SINE B4 13 87 -78 5 1505 369 0 0 0 chr4 120697337 120697378 -34932742 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1505 658 205 0 16 chr4 120697444 120697573 -34932547 + PB1 SINE Alu 1 127 0 5 1505 244 269 275 9 chr4 120697686 120697795 -34932325 + MLT1D-int LTR MaLR 598 735 -636 5 1505 615 146 173 0 chr4 120697898 120698008 -34932112 - B3 SINE B2 -86 130 2 5 1505 298 339 18 18 chr4 120698059 120698173 -34931947 + MLT1D LTR MaLR 263 376 -129 5 1505 285 211 0 0 chr4 120698215 120698267 -34931853 + ID SINE ID 12 63 -161 5 1505 213 299 122 79 chr4 120698401 120698615 -34931505 - L2 LINE L2 -832 2587 2365 5 1505 1120 190 13 47 chr4 120698663 120698895 -34931225 + ID_B1 SINE B4 1 224 0 5 1505 298 206 167 56 chr4 120698925 120698997 -34931123 + RSINE1 SINE B4 24 103 -62 5 1505 450 0 0 0 chr4 120699002 120699052 -34931068 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1505 501 17 0 0 chr4 120699052 120699109 -34931011 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1505 586 203 127 0 chr4 120699406 120699524 -34930596 + B1_Mur2 SINE Alu 1 133 -16 5 1505 207 0 0 0 chr4 120699684 120699707 -34930413 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1505 1440 62 39 0 chr4 120699709 120699887 -34930233 - B2_Mm2 SINE B2 -9 186 2 5 1505 593 216 36 0 chr4 120699924 120700035 -34930085 + PB1D7 SINE Alu 1 115 -5 5 1505 718 239 69 25 chr4 120700051 120700210 -34929910 + B3A SINE B2 3 168 -30 5 1505 459 0 0 0 chr4 120700211 120700262 -34929858 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1505 357 313 58 45 chr4 120700508 120700662 -34929458 - MIRc SINE MIR -89 179 24 5 1505 677 244 50 23 chr4 120700665 120700853 -34929267 - B3A SINE B2 -1 215 27 5 1505 640 137 127 8 chr4 120700853 120700971 -34929149 + B1_Mus1 SINE Alu 1 132 -16 5 1505 235 107 0 51 chr4 120701041 120701100 -34929020 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 1505 481 237 0 92 chr4 120701100 120701230 -34928890 - PB1D9 SINE Alu -1 119 2 5 1505 319 247 141 61 chr4 120701275 120701374 -34928746 - RSINE1 SINE B4 -54 111 5 5 1505 187 204 20 39 chr4 120701696 120701747 -34928373 - L3b LINE CR1 -249 233 184 5 1505 1000 233 10 5 chr4 120701872 120702075 -34928045 + B3 SINE B2 8 211 -5 5 1505 830 136 0 0 chr4 120702098 120702216 -34927904 + B1_Mur4 SINE Alu 27 144 -6 5 1505 357 74 16 0 chr4 120702224 120702280 -34927840 + B1_Mm SINE Alu 47 137 -10 5 1505 279 0 0 0 chr4 120702280 120702311 -34927809 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1505 847 170 20 41 chr4 120702322 120702518 -34927602 + B2_Mm2 SINE B2 3 194 -1 5 1505 505 256 130 13 chr4 120702777 120702931 -34927189 + ID_B1 SINE B4 1 172 -52 5 1505 798 81 0 0 chr4 120702939 120703050 -34927070 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 5 1505 229 272 49 12 chr4 120703511 120703593 -34926527 + L1MEb LINE L1 1 85 -5985 5 1505 591 244 167 11 chr4 120703622 120703796 -34926324 + B3 SINE B2 1 201 -15 5 1505 624 237 6 115 chr4 120703911 120704068 -34926052 + RSINE1 SINE B4 2 141 -24 5 1505 876 173 38 38 chr4 120704124 120704310 -34925810 + B2_Mm2 SINE B2 2 187 -8 5 1505 231 263 0 116 chr4 120704310 120704355 -34925765 - MLT2B5 LTR ERVL 0 555 516 5 1505 243 0 0 0 chr4 120704355 120704382 -34925738 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1505 2006 145 120 0 chr4 120704384 120704735 -34925385 - ORR1B1 LTR MaLR -1 393 1 5 1505 231 263 0 116 chr4 120704735 120704772 -34925348 - MLT2B5 LTR ERVL -40 515 480 5 1505 677 330 107 42 chr4 120704898 120705300 -34924820 - MT2A LTR ERVL -101 432 5 5 1505 580 243 0 42 chr4 120705319 120705398 -34924722 + ID_B1 SINE B4 86 161 -63 5 1505 1718 143 112 9 chr4 120705398 120705736 -34924384 - ORR1D1 LTR MaLR 0 374 2 5 1505 580 243 0 42 chr4 120705736 120705798 -34924322 + ID_B1 SINE B4 162 221 -3 5 1505 322 246 0 0 chr4 120705795 120705860 -34924260 + B3A SINE B2 93 157 -41 5 1505 342 120 400 0 chr4 120705892 120705967 -34924153 + MTD LTR MaLR 21 125 -294 5 1505 351 0 0 0 chr4 120705968 120706007 -34924113 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1505 315 0 0 0 chr4 120706007 120706041 -34924079 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1505 614 193 70 4 chr4 120706042 120706174 -34923946 + MTD LTR MaLR 279 417 -4 5 1505 984 237 19 5 chr4 120707061 120707269 -34922851 + ID_B1 SINE B4 6 216 -8 5 1505 360 0 0 0 chr4 120707269 120707309 -34922811 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 1505 246 229 404 0 chr4 120707408 120707517 -34922603 + B3A SINE B2 1 153 -45 5 1505 1193 57 0 0 chr4 120707616 120707757 -34922363 + B1_Mus2 SINE Alu 1 141 -6 5 1505 243 0 0 0 chr4 120707759 120707786 -34922334 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1505 320 0 25 0 chr4 120707922 120707962 -34922158 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1505 410 269 118 0 chr4 120707976 120708095 -34922025 + ID_B1 SINE B4 86 218 -6 5 1505 331 225 99 0 chr4 120708081 120708223 -34921897 + ORR1B1-int LTR MaLR 599 754 -755 5 1505 1014 82 0 0 chr4 120708128 120708262 -34921858 + B1_Mus2 SINE Alu 13 146 -1 5 1505 2404 125 98 8 chr4 120708321 120708707 -34921413 + MTC LTR MaLR 1 421 0 5 1505 471 274 10 64 chr4 120709029 120709079 -34921041 - ID_B1 SINE B4 -26 266 137 5 1505 707 188 15 15 chr4 120709079 120709214 -34920906 - B1_Mur1 SINE Alu -8 141 7 5 1505 471 274 10 64 chr4 120709214 120709239 -34920881 - ID_B1 SINE B4 -26 136 66 5 1505 232 359 0 13 chr4 120709256 120709335 -34920785 - ID_B1 SINE B4 -13 211 134 5 1505 1462 27 0 141 chr4 120709385 120709495 -34920625 - B2_Mm1a SINE B2 -9 184 104 5 1505 1220 55 0 0 chr4 120709495 120709640 -34920480 - B1_Mus1 SINE Alu 0 148 4 5 1505 1462 27 0 141 chr4 120709640 120709742 -34920378 - B2_Mm1a SINE B2 -90 103 2 5 1505 894 187 80 70 chr4 120709796 120709910 -34920210 - B3 SINE B2 -1 215 101 5 1505 2702 42 6 183 chr4 120709910 120710379 -34919741 + RLTR10 LTR ERVK 1 386 -4 5 1505 894 187 80 70 chr4 120710379 120710477 -34919643 - B3 SINE B2 -116 100 1 5 1505 584 255 57 43 chr4 120710511 120710720 -34919400 - B3 SINE B2 -3 213 2 5 1505 289 250 128 21 chr4 120710831 120710925 -34919195 - MIR SINE MIR -45 223 117 5 1505 485 241 195 0 chr4 120711353 120711527 -34918593 + B3 SINE B2 5 212 -4 5 1505 267 321 140 31 chr4 120713249 120713442 -34916678 + MIR SINE MIR 35 248 -14 5 1505 270 0 0 0 chr4 120714433 120714463 -34915657 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1505 611 203 7 63 chr4 120714602 120714744 -34915376 - B1_Mur2 SINE Alu 0 149 16 5 1505 274 236 0 184 chr4 120715839 120715948 -34914172 + ID_B1 SINE B4 98 186 -38 5 1505 241 238 0 229 chr4 120715948 120715970 -34914150 + PB1D10 SINE Alu 17 117 0 5 1505 663 164 144 30 chr4 120715978 120716110 -34914010 + B1_Mur1 SINE Alu 2 148 -1 5 1506 207 0 0 0 chr4 120718500 120718523 -34911597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1506 324 0 0 0 chr4 120718963 120718999 -34911121 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1506 215 170 21 0 chr4 120719235 120719282 -34910838 + CT-rich Low_complexity Low_complexity 2 49 0 5 1506 1037 141 0 6 chr4 120719285 120719464 -34910656 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1506 186 43 0 0 chr4 120719466 120719489 -34910631 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1506 812 196 0 7 chr4 120719528 120719677 -34910443 - B1_Mur3 SINE Alu -1 148 1 5 1506 288 306 56 8 chr4 120719738 120719863 -34910257 + Lx8 LINE L1 7205 7335 -138 5 1506 409 229 25 99 chr4 120719903 120720024 -34910096 + RSINE1 SINE B4 54 165 0 5 1506 255 204 0 0 chr4 120720040 120720094 -34910026 + (CACCAT)n Simple_repeat Simple_repeat 1 54 0 5 1506 225 0 0 0 chr4 120720094 120720119 -34910001 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 1506 713 231 0 0 chr4 120720290 120720424 -34909696 + B1_Mur1 SINE Alu 1 134 -15 5 1506 661 204 157 0 chr4 120720430 120720577 -34909543 + B3 SINE B2 2 171 -45 5 1506 255 241 149 0 chr4 120720579 120720666 -34909454 - L2 LINE L2 -1386 2033 1934 5 1506 27 29 0 0 chr4 120720779 120720813 -34909307 + AT_rich Low_complexity Low_complexity 1 34 0 5 1506 749 186 21 21 chr4 120720824 120720967 -34909153 + B1_Mur4 SINE Alu 1 143 -7 6 1506 216 0 0 0 chr4 120720970 120720994 -34909126 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 6 1506 605 179 16 64 chr4 120721006 120721131 -34908989 - B1_Mur2 SINE Alu -29 120 2 6 1506 27 29 0 0 chr4 120721131 120721165 -34908955 + AT_rich Low_complexity Low_complexity 1 34 0 6 1506 702 269 6 18 chr4 120721166 120721329 -34908791 - RSINE1 SINE B4 -2 163 3 6 1506 284 161 16 0 chr4 120721794 120721856 -34908264 + CT-rich Low_complexity Low_complexity 2 64 0 6 1506 544 178 9 36 chr4 120721857 120721968 -34908152 - B1_Mus2 SINE Alu 0 147 40 6 1506 358 200 253 0 chr4 120722056 120722151 -34907969 + RSINE1 SINE B4 3 121 -44 6 1506 183 129 0 0 chr4 120725580 120725611 -34904509 + (CCCCCT)n Simple_repeat Simple_repeat 3 33 0 6 1506 185 286 103 13 chr4 120728066 120728144 -34901976 + MIR SINE MIR 32 116 -146 6 1506 757 231 75 25 chr4 120728275 120728475 -34901645 - ID_B1 SINE B4 -13 211 2 6 1506 1747 156 150 19 chr4 120728691 120729058 -34901062 - MTC LTR MaLR -6 415 1 6 1506 363 282 124 1 chr4 120729964 120730098 -34900022 + L2b LINE L2 3251 3425 -1 6 1506 241 250 0 0 chr4 120730295 120730343 -34899777 + ID4 SINE ID 25 72 -11 6 1506 575 92 11 0 chr4 120730375 120730462 -34899658 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1506 838 223 72 26 chr4 120731120 120731313 -34898807 + ID_B1 SINE B4 12 213 -11 6 1506 497 170 56 19 chr4 120732654 120732762 -34897358 - B1_Mur1 SINE Alu -37 112 1 6 1506 468 309 14 0 chr4 120732852 120732991 -34897129 + B1F1 SINE Alu 9 149 0 6 1506 1684 21 5 0 chr4 120734085 120734277 -34895843 - B2_Mm1t SINE B2 0 193 1 6 1506 288 294 44 44 chr4 120734281 120734395 -34895725 - PB1D10 SINE Alu -1 116 3 6 1506 741 213 18 47 chr4 120734397 120734593 -34895527 - B3 SINE B2 -5 188 2 6 1506 222 236 82 14 chr4 120734694 120734767 -34895353 - PB1D10 SINE Alu 0 117 40 6 1506 630 174 8 17 chr4 120734901 120735018 -34895102 + B1_Mus2 SINE Alu 32 147 0 6 1506 422 302 157 12 chr4 120735065 120735313 -34894807 + B4A SINE B4 1 284 -8 6 1506 275 211 141 40 chr4 120735468 120735567 -34894553 + PB1D7 SINE Alu 1 109 -11 6 1506 278 257 218 79 chr4 120735850 120736015 -34894105 - B3A SINE B2 -6 192 5 6 1506 963 122 22 0 chr4 120736622 120736761 -34893359 - B1_Mus1 SINE Alu -6 142 1 6 1506 729 253 22 11 chr4 120736834 120737014 -34893106 + B3A SINE B2 1 182 -16 6 1506 2782 90 49 10 chr4 120737116 120737521 -34892599 + BGLII LTR ERVK 1 421 0 6 1506 1242 149 36 44 chr4 120737570 120737795 -34892325 + URR1A DNA MER1_type 1 223 -3 6 1506 916 159 46 0 chr4 120738601 120738752 -34891368 + MTD LTR MaLR 95 252 -167 6 1506 1121 136 134 20 chr4 120738756 120738958 -34891162 - URR1A DNA MER1_type -1 225 1 6 1506 374 123 0 0 chr4 120738988 120739045 -34891075 + MTD LTR MaLR 362 418 -3 6 1506 283 173 0 0 chr4 120739052 120739104 -34891016 - PB1D10 SINE Alu -18 99 48 6 1506 1158 74 0 0 chr4 120739148 120739296 -34890824 - B1_Mus1 SINE Alu 0 148 1 6 1506 21 36 0 0 chr4 120739300 120739328 -34890792 + AT_rich Low_complexity Low_complexity 1 28 0 6 1506 785 240 22 17 chr4 120739399 120739577 -34890543 + B3A SINE B2 4 182 -16 6 1506 1196 54 0 0 chr4 120739634 120739781 -34890339 + B1_Mm SINE Alu 1 147 0 6 1506 228 137 0 0 chr4 120739784 120739835 -34890285 + (A)n Simple_repeat Simple_repeat 1 51 0 6 1506 559 212 0 10 chr4 120739891 120739991 -34890129 + B1_Mus1 SINE Alu 1 99 -49 6 1506 656 266 0 42 chr4 120740037 120740202 -34889918 - RSINE1 SINE B4 0 165 8 6 1506 205 216 20 0 chr4 120740410 120740461 -34889659 - MIRm SINE MIR -137 139 88 6 1506 256 243 108 0 chr4 120740484 120740558 -34889562 - B1F1 SINE Alu -66 83 2 6 1506 201 293 0 0 chr4 120740697 120740779 -34889341 + T-rich Low_complexity Low_complexity 1 82 0 6 1506 533 262 64 45 chr4 120740825 120740981 -34889139 - RSINE1 SINE B4 -6 159 1 6 1506 500 191 11 0 chr4 120741039 120741133 -34888987 + B1_Mm SINE Alu 44 138 -9 6 1506 221 0 0 33 chr4 120741133 120741163 -34888957 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1506 547 211 0 0 chr4 120741176 120741280 -34888840 + ID_B1 SINE B4 121 224 0 6 1506 749 184 0 0 chr4 120741930 120742055 -34888065 - B1_Mus1 SINE Alu -22 126 2 6 1506 1432 34 79 6 chr4 120742131 120742309 -34887811 + B2_Mm2 SINE B2 4 194 -1 6 1506 222 375 0 48 chr4 120742315 120742399 -34887721 + ID4 SINE ID 2 81 -2 6 1506 611 239 4 134 chr4 120742339 120742435 -34887685 + ID_B1 SINE B4 23 222 0 6 1506 983 67 0 0 chr4 120742435 120742569 -34887551 + B1_Mus1 SINE Alu 15 148 0 6 1506 376 298 70 0 chr4 120742592 120742706 -34887414 + B1F SINE Alu 1 122 -27 6 1506 261 0 0 0 chr4 120742722 120742751 -34887369 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1506 340 271 31 10 chr4 120742855 120742952 -34887168 - B4A SINE B4 -191 101 3 6 1506 216 0 0 0 chr4 120742979 120743003 -34887117 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 6 1506 709 214 19 7 chr4 120743012 120743167 -34886953 + B3 SINE B2 32 188 -28 6 1506 438 20 0 0 chr4 120743167 120743218 -34886902 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1506 572 298 25 6 chr4 120743259 120743421 -34886699 + B3A SINE B2 26 190 -8 6 1506 749 159 309 6 chr4 120743450 120743615 -34886505 + B3 SINE B2 2 216 0 6 1506 21 0 0 0 chr4 120743615 120743636 -34886484 + AT_rich Low_complexity Low_complexity 1 21 0 6 1506 2528 52 21 88 chr4 120743979 120744260 -34885860 - L1_Mus1 LINE L1 -488 6079 5809 6 1506 1659 42 0 0 chr4 120744260 120744452 -34885668 + B2_Mm1a SINE B2 2 193 0 6 1506 2528 52 21 88 chr4 120744452 120744546 -34885574 - L1_Mus1 LINE L1 -759 5808 5729 6 1506 3808 54 8 20 chr4 120744546 120745038 -34885082 + L1_Mus1 LINE L1 6082 6567 0 6 1506 215 322 0 0 chr4 120745158 120745217 -34884903 - MIRc SINE MIR -135 133 75 6 1506 27 0 0 0 chr4 120745340 120745367 -34884753 + AT_rich Low_complexity Low_complexity 1 27 0 6 1506 772 201 7 14 chr4 120745439 120745585 -34884535 + B1_Mm SINE Alu 2 146 -1 6 1506 497 301 6 43 chr4 120745612 120745775 -34884345 + RSINE1 SINE B4 3 159 -6 6 1506 296 214 2 0 chr4 120745862 120745922 -34884198 - ID SINE ID -231 61 1 6 1506 355 291 83 46 chr4 120745926 120746034 -34884086 - B1_Mus2 SINE Alu -25 122 11 6 1506 314 267 74 49 chr4 120746310 120746347 -34883773 + RSINE1 SINE B4 3 35 -130 6 1506 1885 126 106 23 chr4 120746347 120746696 -34883424 + RLTR14 LTR ERV1 3 380 -2 6 1506 314 267 74 49 chr4 120746696 120746780 -34883340 + RSINE1 SINE B4 36 127 -38 6 1506 216 0 0 0 chr4 120746795 120746819 -34883301 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1506 240 35 0 0 chr4 120746819 120746847 -34883273 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1506 671 209 18 65 chr4 120747891 120748060 -34882060 + B3 SINE B2 56 216 0 6 1506 310 228 132 69 chr4 120748554 120748728 -34881392 - B3A SINE B2 -9 189 5 6 1506 515 291 28 0 chr4 120748745 120748886 -34881234 - RSINE1 SINE B4 -8 157 13 6 1506 684 234 42 38 chr4 120748895 120749108 -34881012 - B3 SINE B2 -1 215 2 6 1506 23 33 0 0 chr4 120749426 120749456 -34880664 + AT_rich Low_complexity Low_complexity 1 30 0 6 1506 849 262 27 0 chr4 120749458 120749641 -34880479 - B3 SINE B2 -28 188 1 6 1506 1242 54 0 0 chr4 120750331 120750479 -34879641 - B1_Mus1 SINE Alu 0 148 1 6 1506 371 130 20 20 chr4 120751126 120751228 -34878892 + (TG)n Simple_repeat Simple_repeat 1 102 0 6 1506 886 264 92 3 chr4 120751475 120751710 -34878410 - B4 SINE B4 -19 273 17 6 1506 1131 35 0 78 chr4 120751884 120752038 -34878082 + B1_Mus1 SINE Alu 2 143 -5 6 1506 359 298 96 0 chr4 120752503 120752607 -34877513 + ID_B1 SINE B4 84 197 -27 6 1506 356 326 88 10 chr4 120752732 120752924 -34877196 + MER58A DNA MER1_type 2 208 -16 6 1506 207 298 0 0 chr4 120752955 120753012 -34877108 - MIRb SINE MIR -147 121 65 6 1506 465 260 0 0 chr4 120753542 120753638 -34876482 - B3 SINE B2 -114 102 7 6 1506 21 0 0 0 chr4 120753960 120753981 -34876139 + AT_rich Low_complexity Low_complexity 1 21 0 6 1506 279 323 20 29 chr4 120754431 120754533 -34875587 + polypurine Low_complexity Low_complexity 5 105 0 6 1506 514 222 28 0 chr4 120754533 120754641 -34875479 + B1F SINE Alu 7 117 -32 6 1506 611 215 288 0 chr4 120754760 120754923 -34875197 - ID_B1 SINE B4 -13 211 2 6 1506 253 215 138 11 chr4 120756301 120756395 -34873725 - PB1D9 SINE Alu 0 120 15 6 1506 466 183 0 0 chr4 120756495 120756577 -34873543 - B1_Mus2 SINE Alu -1 146 65 6 1506 1138 128 0 0 chr4 120756589 120756753 -34873367 - U1 snRNA snRNA 0 165 2 6 1506 409 143 41 134 chr4 120756759 120756856 -34873264 - B1_Mur2 SINE Alu -8 141 54 6 1506 271 248 122 20 chr4 120757085 120757233 -34872887 - Tigger6a DNA MER2_type -66 1017 855 6 1506 771 177 0 30 chr4 120757239 120757373 -34872747 + B3 SINE B2 1 130 -86 6 1506 628 287 76 12 chr4 120757528 120757883 -34872237 - Tigger6a DNA MER2_type -353 730 354 6 1506 207 0 0 0 chr4 120757917 120757940 -34872180 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 1506 663 268 107 12 chr4 120758088 120758330 -34871790 - Tigger6a DNA MER2_type -813 270 6 6 1506 582 248 29 87 chr4 120758452 120758624 -34871496 + Lx8 LINE L1 7166 7327 -146 6 1506 462 235 61 0 chr4 120758693 120758808 -34871312 + RSINE1 SINE B4 3 124 -41 7 1506 432 0 0 0 chr4 120758810 120758858 -34871262 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1506 228 355 93 0 chr4 120759349 120759456 -34870664 + MLT1J2 LTR MaLR 298 414 -34 7 1506 1190 185 258 3 chr4 120759466 120759764 -34870356 + ORR1D1 LTR MaLR 1 374 0 7 1506 386 241 112 99 chr4 120760304 120760465 -34869655 + RSINE1 SINE B4 3 165 0 7 1506 482 283 74 10 chr4 120760532 120760845 -34869275 + L1MA5 LINE L1 5960 6300 0 7 1506 319 214 95 59 chr4 120760916 120761085 -34869035 + L1MA6 LINE L1 6120 6294 -6 7 1506 256 341 34 0 chr4 120761144 120761232 -34868888 - MIR SINE MIR -138 124 34 7 1506 282 342 72 0 chr4 120761302 120761413 -34868707 - PB1 SINE Alu -8 119 1 7 1506 248 227 270 11 chr4 120761641 120761730 -34868390 + B1F SINE Alu 21 132 -17 7 1506 225 264 57 0 chr4 120761767 120761820 -34868300 + tRNA-Ala-GCY_ tRNA tRNA 9 64 -11 7 1506 227 31 0 30 chr4 120761824 120761857 -34868263 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 7 1506 245 260 75 38 chr4 120761874 120761954 -34868166 + ID4_ SINE ID 1 83 0 7 1506 775 121 17 0 chr4 120762072 120762188 -34867932 + PB1D9 SINE Alu 3 120 0 7 1506 915 163 7 7 chr4 120762430 120762578 -34867542 - B1_Mur2 SINE Alu 0 149 2 7 1506 551 273 42 0 chr4 120762742 120762885 -34867235 - B1F1 SINE Alu 0 149 1 7 1506 289 234 61 132 chr4 120763698 120763733 -34866387 - B2_Mm2 SINE B2 0 195 165 7 1506 351 0 0 0 chr4 120763733 120763772 -34866348 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1506 387 0 0 0 chr4 120763772 120763814 -34866306 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1506 555 234 61 132 chr4 120763814 120763974 -34866146 - B3A SINE B2 -27 171 13 7 1506 740 165 14 28 chr4 120764027 120764170 -34865950 + B1_Mus1 SINE Alu 8 148 0 7 1506 408 301 34 40 chr4 120764245 120764394 -34865726 + B1F2 SINE Alu 1 148 -1 7 1506 506 314 84 70 chr4 120764394 120764487 -34865633 + B4A SINE B4 2 91 -201 7 1506 207 69 0 0 chr4 120764487 120764516 -34865604 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1506 506 314 84 70 chr4 120764516 120764706 -34865414 + B4A SINE B4 92 288 -4 7 1506 201 39 0 0 chr4 120764987 120765013 -34865107 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1506 4256 48 11 2 chr4 120765085 120765647 -34864473 + LTRIS_Mus LTR ERV1 1 567 -20 7 1506 528 338 28 22 chr4 120767382 120767700 -34862420 + RNERVK23-int LTR ERVK 5106 5425 -2792 7 1506 190 313 105 47 chr4 120768791 120768962 -34861158 - L4 LINE RTE -306 1723 1543 7 1506 907 161 0 13 chr4 120768985 120769136 -34860984 + B1_Mur4 SINE Alu 2 150 0 7 1506 1197 41 7 0 chr4 120769369 120769514 -34860606 + B1_Mus2 SINE Alu 2 147 0 7 1506 237 119 0 23 chr4 120769572 120769615 -34860505 + ID2 SINE ID 2 43 -40 7 1506 295 78 0 38 chr4 120771368 120771421 -34858699 + (CCA)n Simple_repeat Simple_repeat 3 53 0 7 1506 229 259 125 7 chr4 120771475 120771619 -34858501 + Charlie2a DNA MER1_type 1471 1631 -1230 7 1506 271 269 101 46 chr4 120771743 120771852 -34858268 + Charlie2a DNA MER1_type 1855 1969 -892 7 1506 261 270 0 0 chr4 120772027 120772101 -34858019 - MMTV-int LTR ERVK -1975 5278 5205 7 1506 523 306 49 49 chr4 120772307 120772663 -34857457 - RNERVK23-int LTR ERVK -2792 5425 4846 7 1506 5340 91 65 98 chr4 120772843 120773767 -34856353 + RLTR13B1 LTR ERVK 1 893 0 7 1506 8753 26 0 4 chr4 120774351 120775442 -34854678 - L1Md_F2 LINE L1 0 6582 5495 7 1506 526 327 60 26 chr4 120775981 120776477 -34853643 - IAPEz-int LTR ERVK -3195 3286 2617 7 1506 934 249 11 0 chr4 120777518 120777699 -34852421 + B3 SINE B2 1 183 -33 7 1506 477 0 0 0 chr4 120777730 120777783 -34852337 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1506 276 143 40 20 chr4 120777784 120777834 -34852286 + B1_Mur1 SINE Alu 98 148 -1 7 1506 1121 211 0 28 chr4 120778851 120779066 -34851054 - B3 SINE B2 -7 209 1 7 1506 786 217 47 32 chr4 120779162 120779352 -34850768 + B2_Mm2 SINE B2 1 193 -2 7 1506 2726 142 17 7 chr4 120779604 120780021 -34850099 + MTC LTR MaLR 1 421 0 7 1506 420 341 68 10 chr4 120780116 120780323 -34849797 - MIR SINE MIR -41 221 3 7 1506 630 252 0 43 chr4 120780369 120780510 -34849610 - ID_B1 SINE B4 -9 215 81 7 1506 928 178 20 7 chr4 120780956 120781103 -34849017 - B1_Mur4 SINE Alu 0 150 2 7 1506 288 325 48 0 chr4 120782071 120782154 -34847966 + ID SINE ID 2 88 -136 7 1506 780 186 169 0 chr4 120782156 120782339 -34847781 - MTD LTR MaLR -6 413 200 7 1506 986 233 63 19 chr4 120782339 120782545 -34847575 - B3 SINE B2 0 216 2 7 1506 1311 20 0 13 chr4 120782564 120782713 -34847407 - B1_Mm SINE Alu 0 147 1 7 1506 180 0 0 0 chr4 120782728 120782748 -34847372 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1506 1050 54 0 204 chr4 120782750 120782936 -34847184 - B1_Mus1 SINE Alu 0 148 1 7 1506 742 287 10 31 chr4 120782936 120783130 -34846990 - MTD LTR MaLR -210 209 20 7 1506 314 23 23 0 chr4 120783130 120783173 -34846947 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1506 1291 34 0 7 chr4 120783268 120783415 -34846705 + B1_Mus2 SINE Alu 2 147 0 7 1506 311 209 45 0 chr4 120783947 120784014 -34846106 + RLTR18-int LTR ERVK 2578 2647 -2714 7 1506 838 179 57 7 chr4 120784081 120784222 -34845898 - B1_Mur3 SINE Alu 0 149 2 7 1506 873 239 6 0 chr4 120784224 120784400 -34845720 + RLTR18-int LTR ERVK 2826 3002 -2359 7 1506 1573 212 44 49 chr4 120784393 120784587 -34845533 + RLTR18-int LTR ERVK 3176 3382 -1979 7 1506 252 0 0 0 chr4 120784587 120784615 -34845505 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 7 1506 1188 78 0 0 chr4 120784625 120784767 -34845353 - B1_Mus2 SINE Alu -5 142 1 7 1506 1573 212 44 49 chr4 120784767 120784967 -34845153 + RLTR18-int LTR ERVK 3387 3578 -1783 7 1506 532 234 49 31 chr4 120785317 120785480 -34844640 - RLTR23 LTR ERV1 0 430 265 7 1506 357 24 0 0 chr4 120785805 120785847 -34844273 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 7 1506 1451 104 0 20 chr4 120785986 120786183 -34843937 - B2_Mm1t SINE B2 0 193 1 7 1506 231 88 0 0 chr4 120786629 120786663 -34843457 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1506 1611 43 27 0 chr4 120786686 120786873 -34843247 - B2_Mm1t SINE B2 0 193 2 7 1506 323 227 15 0 chr4 120786943 120787009 -34843111 + RLTR42-int LTR ERVK 1797 1863 -3659 7 1506 484 177 111 120 chr4 120787093 120787318 -34842802 + RLTR42-int LTR ERVK 2039 2261 -3261 7 1506 231 36 0 0 chr4 120787328 120787356 -34842764 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 7 1506 405 0 0 0 chr4 120787833 120787878 -34842242 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1506 1324 41 0 0 chr4 120788185 120788332 -34841788 - B1_Mus2 SINE Alu 0 147 1 7 1506 504 48 0 0 chr4 120788738 120788801 -34841319 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 7 1506 2358 88 27 59 chr4 120788808 120789145 -34840975 - ORR1A3 LTR MaLR 0 326 1 7 1506 1347 182 148 46 chr4 120789618 120789824 -34840296 + RLTR18-int LTR ERVK 4084 4305 -1056 7 1506 1088 22 64 50 chr4 120789824 120789964 -34840156 + B1_Mm SINE Alu 1 142 -5 7 1506 336 83 0 0 chr4 120789968 120790016 -34840104 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 7 1506 1347 182 148 46 chr4 120790016 120790196 -34839924 + RLTR18-int LTR ERVK 4306 4515 -846 7 1506 2770 133 63 40 chr4 120790197 120790608 -34839512 + RLTR11A LTR ERVK 23 451 -77 7 1506 4987 117 48 28 chr4 120790608 120791330 -34838790 + RMER19A LTR ERVK 1 737 0 7 1506 2770 133 63 40 chr4 120791330 120791413 -34838707 + RLTR11A LTR ERVK 452 528 0 7 1506 442 213 53 11 chr4 120791413 120791508 -34838612 + RLTR18-int LTR ERVK 4518 4616 -745 7 1506 398 266 84 97 chr4 120791633 120791767 -34838353 + RLTR18-int LTR ERVK 4608 4729 -632 7 1506 182 37 0 36 chr4 120791767 120791795 -34838325 + (TTATG)n Simple_repeat Simple_repeat 1 27 0 7 1506 398 266 84 97 chr4 120791795 120791897 -34838223 + RLTR18-int LTR ERVK 4730 4840 -521 7 1506 664 195 42 0 chr4 120792289 120792407 -34837713 - ETnERV2-int LTR ERVK -214 7192 7070 7 1506 293 200 0 0 chr4 120792446 120792496 -34837624 + RLTR18-int LTR ERVK 4813 4862 -499 7 1506 819 180 19 26 chr4 120792598 120792718 -34837402 + RLTR18-int LTR ERVK 5209 5331 -30 7 1506 1263 35 0 34 chr4 120792718 120792729 -34837391 - B1_Mus2 SINE Alu -3 144 136 7 1506 297 0 0 0 chr4 120792729 120792762 -34837358 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1506 1263 35 0 34 chr4 120792762 120792899 -34837221 - B1_Mus2 SINE Alu -12 135 1 7 1506 819 180 19 26 chr4 120792899 120792932 -34837188 + RLTR18-int LTR ERVK 5332 5360 -1 7 1506 2127 134 74 51 chr4 120792932 120793324 -34836796 + RLTR18 LTR ERVK 1 401 -215 7 1506 1481 88 0 5 chr4 120793659 120793853 -34836267 + B2_Mm2 SINE B2 3 195 0 7 1506 606 121 10 0 chr4 120793954 120794053 -34836067 + RLTR18 LTR ERVK 376 475 -141 7 1506 28466 105 16 36 chr4 120794053 120800836 -34829284 - L1Md_F2 LINE L1 -12 6570 294 7 1506 982 146 10 4 chr4 120800847 120801016 -34829104 - L1VL1 LINE L1 -6077 345 17 7 1506 284 221 209 0 chr4 120801425 120801511 -34828609 + U6 snRNA snRNA 1 104 -3 7 1506 207 0 0 0 chr4 120801514 120801537 -34828583 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1506 802 238 48 14 chr4 120801607 120801816 -34828304 + B3 SINE B2 1 216 0 7 1506 2332 142 46 21 chr4 120802135 120802508 -34827612 + RLTR14 LTR ERV1 1 382 0 7 1506 269 324 0 13 chr4 120802665 120802740 -34827380 + RSINE1 SINE B4 2 75 -90 7 1506 3377 37 48 0 chr4 120803092 120803470 -34826650 + MTA_Mm LTR MaLR 1 396 0 7 1506 318 50 0 0 chr4 120805054 120805094 -34825026 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1506 660 172 60 101 chr4 120805214 120805363 -34824757 + B1_Mur1 SINE Alu 5 147 -2 7 1506 408 40 0 0 chr4 120806092 120806142 -34823978 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 7 1506 289 227 204 0 chr4 120806142 120806230 -34823890 - B1_Mus2 SINE Alu -11 136 31 7 1506 527 234 78 28 chr4 120806355 120806496 -34823624 - B1_Mur1 SINE Alu -1 148 1 7 1506 309 100 0 0 chr4 120806511 120806561 -34823559 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1506 408 20 0 0 chr4 120806563 120806612 -34823508 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1506 422 197 53 0 chr4 120806632 120806708 -34823412 - ID2 SINE ID 0 83 4 7 1506 1491 123 0 9 chr4 120807261 120807490 -34822630 + 7SK RNA RNA 1 227 -104 7 1506 971 219 36 0 chr4 120807494 120807686 -34822434 - B3 SINE B2 -11 205 7 7 1506 580 143 61 0 chr4 120807701 120807799 -34822321 - RMER10B LTR ERVL -294 104 1 7 1506 26970 81 14 1 chr4 120807868 120810923 -34819197 - L1Md_F2 LINE L1 -3 6579 3478 7 1506 183 42 0 0 chr4 120810923 120810947 -34819173 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1506 26970 96 14 1 chr4 120810947 120812399 -34817721 - L1_Mm LINE L1 -2406 3477 2010 7 1506 1151 110 0 0 chr4 120812397 120812570 -34817550 + L1_Mm LINE L1 3511 3683 -2200 7 1506 1192 75 12 0 chr4 120812570 120812731 -34817389 - B2_Mm2 SINE B2 -32 163 1 8 1506 1569 245 74 59 chr4 120812733 120813341 -34816779 - MYSERV16_I-int LTR ERVK -1424 902 286 8 1506 4583 222 46 39 chr4 120813337 120813529 -34816591 - MYSERV6-int LTR ERVK -4658 4301 4126 8 1506 1226 48 14 0 chr4 120813529 120813674 -34816446 - B1_Mm SINE Alu 0 147 1 8 1506 4583 222 46 39 chr4 120813674 120814598 -34815522 - MYSERV6-int LTR ERVK -4834 4125 3177 8 1506 1508 178 22 7 chr4 120814618 120814890 -34815230 - MYSERV6-int LTR ERVK -5897 3062 2787 8 1506 774 256 134 22 chr4 120814897 120815165 -34814955 + L1MB1 LINE L1 4817 5098 -782 8 1506 544 214 36 0 chr4 120815165 120815277 -34814843 + PB1D10 SINE Alu 1 116 -1 8 1506 886 275 69 42 chr4 120815277 120815766 -34814354 + L1MB1 LINE L1 5099 5613 -684 8 1506 456 202 115 0 chr4 120815791 120815895 -34814225 + B1_Mur1 SINE Alu 9 124 -25 8 1506 248 246 176 42 chr4 120815895 120815910 -34814210 + ID_B1 SINE B4 90 224 0 8 1506 259 319 185 11 chr4 120815916 120816008 -34814112 + PB1D10 SINE Alu 2 109 -8 8 1506 257 286 0 0 chr4 120816027 120816083 -34814037 + Lx8 LINE L1 7167 7222 -251 8 1506 658 285 86 8 chr4 120816112 120816367 -34813753 + Lx8 LINE L1 7197 7471 -2 8 1506 802 246 159 123 chr4 120816571 120817044 -34813076 + RLTR21 LTR ERVK 1083 1572 0 8 1506 394 246 174 29 chr4 120817044 120817236 -34812884 + L1MB1 LINE L1 5723 5944 -359 8 1506 488 215 185 9 chr4 120817245 120817353 -34812767 + B1F2 SINE Alu 2 128 -21 8 1506 248 240 160 0 chr4 120817374 120817449 -34812671 + B1F1 SINE Alu 14 100 -49 8 1506 477 272 73 21 chr4 120817933 120818090 -34812030 - B3 SINE B2 -25 191 17 8 1506 213 39 0 0 chr4 120818741 120818767 -34811353 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1506 229 286 0 0 chr4 120820183 120820246 -34809874 + (TCTCTG)n Simple_repeat Simple_repeat 1 63 0 8 1506 792 176 0 0 chr4 120823722 120823853 -34806267 + B1_Mus1 SINE Alu 6 136 -12 8 1506 356 252 89 45 chr4 120823898 120824010 -34806110 + B1F SINE Alu 13 129 -20 8 1506 227 308 0 0 chr4 120824758 120824810 -34805310 + B1F1 SINE Alu 9 60 -89 8 1506 202 209 0 0 chr4 120825241 120825276 -34804844 + T-rich Low_complexity Low_complexity 9 43 0 8 1506 844 184 57 0 chr4 120825276 120825417 -34804703 - B1_Mur3 SINE Alu 0 149 1 8 1506 237 306 0 40 chr4 120825660 120825735 -34804385 + MLT1J LTR MaLR 65 136 -376 8 1506 297 323 89 20 chr4 120826315 120826416 -34803704 + PB1D10 SINE Alu 10 117 0 8 1506 876 177 119 11 chr4 120826459 120826636 -34803484 + B3 SINE B2 2 197 -19 8 1506 423 192 0 111 chr4 120827037 120827154 -34802966 + B3 SINE B2 5 108 -108 8 1506 291 220 109 10 chr4 120827209 120827310 -34802810 + PB1D7 SINE Alu 1 111 -9 8 1506 347 155 0 17 chr4 120828018 120828077 -34802043 + B1_Mm SINE Alu 81 138 -9 8 1506 404 296 48 27 chr4 120828289 120828435 -34801685 + B1F SINE Alu 1 149 0 8 1506 656 322 3 29 chr4 120828461 120828665 -34801455 + B3A SINE B2 4 203 -13 8 1506 768 264 7 0 chr4 120828681 120828836 -34801284 + B3A SINE B2 2 157 -41 8 1506 235 337 33 0 chr4 120828876 120828968 -34801152 - B1F SINE Alu -54 95 1 8 1506 189 121 0 0 chr4 120829236 120829269 -34800851 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1506 730 279 111 30 chr4 120829439 120829709 -34800411 + B4A SINE B4 1 292 0 8 1506 261 240 188 10 chr4 120829728 120829829 -34800291 + PB1D7 SINE Alu 1 119 -1 8 1506 292 386 20 52 chr4 120829903 120830056 -34800064 + B4 SINE B4 36 183 -109 8 1506 563 180 0 20 chr4 120830110 120830212 -34799908 + B1_Mur4 SINE Alu 43 142 -8 8 1506 236 280 53 0 chr4 120830610 120830685 -34799435 + PB1D10 SINE Alu 37 115 -2 8 1506 252 122 0 0 chr4 120831263 120831304 -34798816 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1506 242 250 27 14 chr4 120832286 120832359 -34797761 - ID4_ SINE ID -8 75 2 8 1506 273 236 0 0 chr4 120832450 120832505 -34797615 - PB1D9 SINE Alu -9 111 57 8 1506 1230 36 0 0 chr4 120832546 120832684 -34797436 - B1_Mus2 SINE Alu -9 138 1 8 1506 433 246 146 0 chr4 120832879 120832989 -34797131 - RSINE1 SINE B4 -37 128 3 8 1506 594 165 10 0 chr4 120833040 120833143 -34796977 - B1_Mur2 SINE Alu -1 148 45 8 1506 531 302 6 53 chr4 120833197 120833368 -34796752 - B4 SINE B4 -128 164 2 8 1506 620 234 22 0 chr4 120833387 120833524 -34796596 - B1F SINE Alu -7 142 3 8 1506 491 160 0 131 chr4 120833606 120833728 -34796392 + PB1D9 SINE Alu 14 119 -1 8 1506 207 0 0 0 chr4 120833771 120833794 -34796326 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1506 1251 35 0 0 chr4 120833917 120834062 -34796058 + B1_Mus2 SINE Alu 2 146 -1 8 1506 21 57 0 0 chr4 120834756 120834791 -34795329 + AT_rich Low_complexity Low_complexity 1 35 0 8 1506 898 255 10 0 chr4 120834795 120834999 -34795121 + B3 SINE B2 1 206 -10 8 1506 232 233 0 23 chr4 120835554 120835598 -34794522 + ID SINE ID 34 76 -148 8 1506 319 268 76 59 chr4 120835996 120836115 -34794005 + PB1D10 SINE Alu 6 126 -22 8 1506 222 118 0 0 chr4 120837517 120837551 -34792569 + (CAGC)n Simple_repeat Simple_repeat 1 34 0 8 1506 346 264 55 28 chr4 120837811 120837920 -34792200 - B4 SINE B4 -22 270 159 8 1506 24 53 0 0 chr4 120837945 120837983 -34792137 + AT_rich Low_complexity Low_complexity 1 38 0 8 1506 280 319 32 21 chr4 120838717 120838810 -34791310 - RSINE1 SINE B4 0 165 72 8 1506 234 0 0 0 chr4 120839052 120839078 -34791042 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1506 183 292 42 0 chr4 120839103 120839175 -34790945 - L2 LINE L2 -528 2891 2817 8 1506 288 186 0 0 chr4 120839307 120839366 -34790754 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 8 1506 1070 121 65 62 chr4 120839553 120839932 -34790188 + RLTR6_Mm LTR ERV1 74 584 -70 8 1506 616 292 37 11 chr4 120839951 120840138 -34789982 - ID_B1 SINE B4 -18 206 15 8 1506 410 201 68 61 chr4 120840496 120840644 -34789476 + B1F SINE Alu 1 149 0 8 1506 892 92 40 40 chr4 120840813 120840961 -34789159 + B1_Mus1 SINE Alu 1 148 0 8 1506 1404 70 32 0 chr4 120841037 120841223 -34788897 + B2_Mm1t SINE B2 1 192 -1 8 1506 276 135 287 53 chr4 120841258 120841352 -34788768 + PB1D9 SINE Alu 5 120 0 8 1506 439 290 39 24 chr4 120841431 120841558 -34788562 + ID_B1 SINE B4 5 133 -91 8 1506 389 284 78 0 chr4 120842305 120842446 -34787674 + RSINE1 SINE B4 12 163 -2 8 1506 360 250 65 0 chr4 120843508 120843600 -34786520 - ID_B1 SINE B4 -3 221 124 8 1506 371 302 119 6 chr4 120843861 120844021 -34786099 - MIRb SINE MIR -8 260 83 8 1506 359 241 0 0 chr4 120844116 120844199 -34785921 - MER103 DNA DNA -82 84 2 8 1506 231 174 0 0 chr4 120844167 120844213 -34785907 - Charlie14a DNA MER1_type 0 1164 1119 8 1506 297 257 0 0 chr4 120844402 120844476 -34785644 - MER5A1 DNA MER1_type -4 162 89 8 1506 248 150 233 0 chr4 120844532 120844592 -34785528 + RLTR6_Mm LTR ERV1 1 74 -580 8 1506 1775 127 266 48 chr4 120844637 120845091 -34785029 + RLTR6_Mm LTR ERV1 37 589 -65 8 188 34492 30 21 0 chr4 120845106 120849138 -34780982 + RLTR6-int LTR ERV1 1 4115 -3663 8 1507 12716 34 1 3 chr4 120849126 120850578 -34779542 + RLTR6-int LTR ERV1 6330 7778 0 8 1507 1771 138 246 68 chr4 120850578 120851075 -34779045 + RLTR6_Mm LTR ERV1 1 585 -69 8 1507 251 224 169 13 chr4 120851074 120851151 -34778969 - B1_Mur2 SINE Alu -56 93 5 8 1507 1136 51 7 0 chr4 120851193 120851331 -34778789 + B1_Mus2 SINE Alu 5 143 -4 8 1507 195 100 0 0 chr4 120851477 120851507 -34778613 + (CATG)n Simple_repeat Simple_repeat 2 31 0 8 1507 414 168 50 40 chr4 120851551 120851650 -34778470 - B3 SINE B2 -112 104 5 8 1507 402 301 62 40 chr4 120851879 120852104 -34778016 - L1MC LINE L1 -2105 5777 5548 8 1507 270 224 35 0 chr4 120853222 120853280 -34776840 - B1F2 SINE Alu -89 60 1 8 1507 643 256 55 6 chr4 120853668 120853833 -34776287 + B3A SINE B2 10 182 -16 8 1507 225 210 60 75 chr4 120853878 120853945 -34776175 + B3 SINE B2 79 144 -72 8 1507 824 141 56 14 chr4 120854142 120854286 -34775834 + B1_Mur4 SINE Alu 1 150 0 8 1507 1072 49 27 27 chr4 120854693 120854839 -34775281 + B1_Mm SINE Alu 2 147 0 8 1507 227 250 78 13 chr4 120855005 120855082 -34775038 - ID_B1 SINE B4 -55 169 88 8 1507 245 51 0 25 chr4 120855553 120855593 -34774527 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1507 3399 119 73 55 chr4 120855673 120855867 -34774253 + RLTR33 LTR ERVK 8 202 -476 8 1507 1152 82 0 0 chr4 120855867 120856013 -34774107 + B1_Mus1 SINE Alu 3 148 0 8 1507 3399 119 73 55 chr4 120856013 120856477 -34773643 + RLTR33 LTR ERVK 203 678 0 8 1507 1716 10 0 20 chr4 120856495 120856691 -34773429 + B2_Mm1a SINE B2 2 193 0 8 1507 315 0 0 0 chr4 120857141 120857176 -34772944 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1507 444 242 32 0 chr4 120857199 120857294 -34772826 + PB1D9 SINE Alu 3 100 -20 8 1507 880 164 14 7 chr4 120857623 120857770 -34772350 + B1_Mus1 SINE Alu 1 148 0 8 1507 460 254 24 16 chr4 120858024 120858113 -34772007 - RSINE1 SINE B4 -36 129 41 8 1507 193 29 59 0 chr4 120858113 120858147 -34771973 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8 1507 460 254 24 16 chr4 120858147 120858181 -34771939 - RSINE1 SINE B4 -125 40 5 8 1507 279 0 0 0 chr4 120858493 120858524 -34771596 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1507 255 254 75 21 chr4 120858814 120858924 -34771196 + B1F SINE Alu 6 119 -1 8 1507 1430 70 37 11 chr4 120859002 120859191 -34770929 + B2_Mm2 SINE B2 2 195 0 8 1507 395 275 34 34 chr4 120859518 120859665 -34770455 + B1F SINE Alu 3 149 0 8 1507 688 300 75 40 chr4 120860161 120860439 -34769681 - B4 SINE B4 0 292 5 8 1507 545 315 125 39 chr4 120861944 120862281 -34767839 + MTEa LTR MaLR 1 366 -13 8 1507 276 219 69 95 chr4 120862354 120862369 -34767751 + MT2B LTR ERVL 152 264 -337 8 1507 576 109 79 0 chr4 120862369 120862470 -34767650 + B1_Mus1 SINE Alu 5 113 -35 9 1507 510 161 186 0 chr4 120863659 120863783 -34766337 + B1_Mus2 SINE Alu 1 147 0 9 1507 1195 48 0 0 chr4 120863787 120863933 -34766187 + B1_Mm SINE Alu 2 147 0 9 1507 290 171 368 0 chr4 120864692 120864768 -34765352 - PB1D10 SINE Alu -13 104 1 9 1507 398 194 308 8 chr4 120864768 120864834 -34765286 - ID_B1 SINE B4 -118 106 2 9 1507 27 0 0 0 chr4 120864883 120864910 -34765210 + AT_rich Low_complexity Low_complexity 1 27 0 9 1507 310 184 0 0 chr4 120864952 120865001 -34765119 - PB1D9 SINE Alu -27 93 45 9 1507 434 289 168 6 chr4 120865032 120865199 -34764921 - B3A SINE B2 -1 197 4 9 1507 315 0 0 0 chr4 120865362 120865397 -34764723 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 9 1507 359 239 0 0 chr4 120865400 120865467 -34764653 - BC1_Mm scRNA scRNA -81 71 5 9 1507 272 25 50 0 chr4 120865579 120865619 -34764501 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 9 1507 1541 164 60 9 chr4 120866550 120866865 -34763255 + MYSERV16_I-int LTR ERVK 1996 2326 0 9 1507 1561 188 185 39 chr4 120866865 120867330 -34762790 + RLTR20B3 LTR ERVK 1 533 -44 9 1507 23 0 0 0 chr4 120867336 120867359 -34762761 + AT_rich Low_complexity Low_complexity 1 23 0 9 1507 634 177 27 60 chr4 120867388 120867538 -34762582 - B1_Mur4 SINE Alu 0 150 6 9 1507 698 196 132 53 chr4 120867737 120867926 -34762194 + B3 SINE B2 2 205 -11 9 1507 24 0 0 0 chr4 120868089 120868113 -34762007 + AT_rich Low_complexity Low_complexity 1 24 0 9 1507 602 210 28 35 chr4 120868114 120868257 -34761863 + B1_Mur2 SINE Alu 1 142 -7 9 1507 735 243 72 0 chr4 120868260 120868441 -34761679 - B3 SINE B2 -21 195 2 9 1507 21 0 0 0 chr4 120868475 120868496 -34761624 + AT_rich Low_complexity Low_complexity 1 21 0 9 1507 339 25 0 0 chr4 120868875 120868915 -34761205 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1507 209 161 0 0 chr4 120868917 120868948 -34761172 + G-rich Low_complexity Low_complexity 2 32 0 9 1507 198 0 0 0 chr4 120869096 120869118 -34761002 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1507 408 300 164 30 chr4 120869127 120869292 -34760828 - ID_B1 SINE B4 -36 188 2 9 1507 809 146 8 30 chr4 120869395 120869529 -34760591 + B1_Mur3 SINE Alu 1 131 -18 9 1507 418 260 77 39 chr4 120869870 120870026 -34760094 + ID_B1 SINE B4 8 169 -55 9 1507 671 188 0 8 chr4 120870258 120870376 -34759744 + B1_Mus1 SINE Alu 25 141 -7 9 1507 200 342 76 8 chr4 120870737 120870855 -34759265 - L3 LINE CR1 -764 3725 3600 9 1507 224 209 0 0 chr4 120871083 120871126 -34758994 - ID4 SINE ID -38 45 3 9 1507 660 248 22 7 chr4 120871160 120871298 -34758822 - B1F1 SINE Alu -8 141 2 9 1507 186 43 0 0 chr4 120871616 120871639 -34758481 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1507 857 258 133 52 chr4 120871774 120872216 -34757904 + RMER5 LTR ERV1 57 534 0 9 1507 409 229 26 68 chr4 120872283 120872400 -34757720 - PB1D10 SINE Alu 0 117 6 9 1507 327 340 6 6 chr4 120872476 120872636 -34757484 + L1M4 LINE L1 4797 4956 -1190 9 1507 458 284 23 45 chr4 120872666 120872799 -34757321 + RSINE1 SINE B4 36 165 0 9 1507 211 219 0 0 chr4 120872836 120872877 -34757243 + B1_Mus2 SINE Alu 1 41 -106 9 1507 584 0 28 0 chr4 120872901 120872972 -34757148 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 9 1507 233 216 296 10 chr4 120872980 120873078 -34757042 + L1MB3 LINE L1 5935 6060 -123 9 1507 320 61 61 0 chr4 120873195 120873244 -34756876 + B2_Mm2 SINE B2 2 53 -142 9 1507 298 203 13 80 chr4 120873233 120873308 -34756812 + B3 SINE B2 137 206 -10 9 1507 252 0 0 0 chr4 120873308 120873336 -34756784 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 1507 777 176 115 35 chr4 120873365 120873565 -34756555 + B3 SINE B2 1 216 0 9 1507 272 262 83 18 chr4 120873769 120873878 -34756242 - PB1D10 SINE Alu 0 117 2 9 1507 546 246 35 22 chr4 120873878 120873960 -34756160 - ID_B1 SINE B4 -197 95 4 9 1507 426 254 44 0 chr4 120874404 120874518 -34755602 + PB1D9 SINE Alu 2 120 0 9 1507 317 264 136 63 chr4 120874718 120875164 -34754956 + L1MD LINE L1 4902 5380 -766 9 1507 233 381 28 19 chr4 120875432 120875539 -34754581 + PB1D10 SINE Alu 1 108 -9 9 1507 2490 295 155 20 chr4 120876178 120877292 -34752828 + Lx8 LINE L1 6111 7370 -103 9 1507 2712 25 64 6 chr4 120877292 120877619 -34752501 + ORR1A1 LTR MaLR 1 346 0 9 1507 2490 295 155 20 chr4 120877619 120877701 -34752419 + Lx8 LINE L1 7371 7468 -5 9 1507 851 213 67 34 chr4 120877901 120877957 -34752163 - B3 SINE B2 0 216 163 9 1507 195 42 0 0 chr4 120877957 120877981 -34752139 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1507 851 213 67 34 chr4 120877981 120878133 -34751987 - B3 SINE B2 -54 162 2 9 1507 344 237 8 106 chr4 120878266 120878352 -34751768 + ID_B1 SINE B4 106 191 -33 9 1507 1637 32 5 0 chr4 120878352 120878542 -34751578 - B2_Mm1t SINE B2 -1 192 2 9 1507 344 237 8 106 chr4 120878542 120878587 -34751533 + ID_B1 SINE B4 192 224 0 9 1507 215 375 0 0 chr4 120878597 120878653 -34751467 + RSINE1 SINE B4 4 59 -106 9 1507 265 283 122 9 chr4 120878813 120878920 -34751200 + PB1D7 SINE Alu 2 120 0 9 1507 368 281 93 8 chr4 120879331 120879460 -34750660 + RSINE1 SINE B4 26 165 0 9 1507 219 69 0 0 chr4 120879586 120879615 -34750505 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 9 1507 716 150 253 18 chr4 120879645 120879815 -34750305 + B3 SINE B2 2 211 -5 9 1507 2677 101 48 37 chr4 120879945 120880399 -34749721 - RMER6B LTR ERVK -2 459 1 9 1507 482 82 0 0 chr4 120880662 120880735 -34749385 + B1_Mus2 SINE Alu 2 74 -73 9 1507 192 179 0 0 chr4 120880737 120880776 -34749344 + (TATG)n Simple_repeat Simple_repeat 2 40 0 9 1507 293 309 15 38 chr4 120880914 120881045 -34749075 + B1F SINE Alu 1 128 -21 9 1507 226 325 36 0 chr4 120881303 120881386 -34748734 + ID_B1 SINE B4 94 179 -45 9 1507 220 328 62 62 chr4 120881386 120881433 -34748687 + B1F2 SINE Alu 13 142 -7 9 1507 418 195 0 0 chr4 120881477 120881564 -34748556 - ID_B1 SINE B4 -1 223 137 9 1507 287 267 184 72 chr4 120881669 120881794 -34748326 - ID_B1 SINE B4 -85 139 1 9 1507 347 226 128 0 chr4 120881806 120881908 -34748212 - PB1D10 SINE Alu -1 116 2 9 1507 334 202 37 25 chr4 120881925 120882006 -34748114 + B4A SINE B4 74 155 -137 9 1507 405 115 92 0 chr4 120881939 120882029 -34748091 + B1_Mur4 SINE Alu 6 117 -3 9 1507 198 0 0 0 chr4 120882160 120882182 -34747938 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1507 432 287 145 23 chr4 120882354 120882568 -34747552 + Tigger7 DNA MER2_type 67 306 -2185 9 1507 483 240 78 26 chr4 120882613 120882767 -34747353 + Tigger7 DNA MER2_type 2174 2335 -156 9 1507 234 91 0 0 chr4 120882801 120882834 -34747286 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 9 1507 449 277 72 7 chr4 120882857 120882995 -34747125 - RSINE1 SINE B4 -17 148 2 9 1507 621 218 48 21 chr4 120883215 120883346 -34746774 + B1_Mur1 SINE Alu 1 138 -11 9 1507 257 0 0 29 chr4 120883346 120883380 -34746740 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1507 621 218 48 21 chr4 120883380 120883393 -34746727 + B1_Mur1 SINE Alu 139 149 0 9 1507 1211 125 11 0 chr4 120883548 120883724 -34746396 + B2_Mm1t SINE B2 2 179 -14 9 1507 278 131 177 42 chr4 120883809 120883914 -34746206 + B2_Mm2 SINE B2 47 184 -9 9 1507 362 276 241 0 chr4 120884001 120884117 -34746003 - RSINE1 SINE B4 -19 146 3 9 1507 232 222 0 0 chr4 120884236 120884281 -34745839 - RSINE1 SINE B4 -37 128 84 9 1507 311 313 53 135 chr4 120884283 120884375 -34745745 - B4A SINE B4 -20 272 184 9 1507 709 136 206 69 chr4 120884375 120884564 -34745556 + B3 SINE B2 2 216 0 9 1507 198 0 0 0 chr4 120884568 120884590 -34745530 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 9 1507 311 313 53 135 chr4 120884590 120884699 -34745421 - B4A SINE B4 -109 183 83 9 1507 208 294 0 19 chr4 120884730 120884776 -34745344 + C-rich Low_complexity Low_complexity 10 55 0 9 1507 1123 44 0 7 chr4 120884776 120884913 -34745207 - B1_Mm SINE Alu -11 136 1 9 1507 568 167 74 8 chr4 120884926 120885047 -34745073 - B1_Mur2 SINE Alu 0 149 21 9 1507 652 227 20 41 chr4 120885141 120885288 -34744832 - B1_Mur1 SINE Alu -5 144 1 9 1507 435 246 79 0 chr4 120885478 120885592 -34744528 + B1_Mus1 SINE Alu 2 124 -24 9 1507 189 0 0 0 chr4 120886902 120886923 -34743197 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1507 21 0 0 0 chr4 120887304 120887325 -34742795 + GC_rich Low_complexity Low_complexity 1 21 0 9 1507 180 111 0 0 chr4 120887616 120887643 -34742477 + (CCCCAG)n Simple_repeat Simple_repeat 5 31 0 9 1507 709 186 0 0 chr4 120888187 120888311 -34741809 - B1_Mus1 SINE Alu -7 141 18 9 1507 437 111 0 14 chr4 120888309 120888382 -34741738 + B1_Mur3 SINE Alu 45 116 -33 9 1507 315 120 20 0 chr4 120888389 120888439 -34741681 + PB1D10 SINE Alu 23 73 -44 9 1507 635 169 8 0 chr4 120888552 120888676 -34741444 + (TA)n Simple_repeat Simple_repeat 1 125 0 9 1507 926 256 42 42 chr4 120888849 120889145 -34740975 + MTD LTR MaLR 1 296 -123 9 1507 2411 77 12 90 chr4 120889145 120889557 -34740563 + MTA_Mm LTR MaLR 1 380 -16 9 1507 316 271 21 0 chr4 120889557 120889653 -34740467 + MTD LTR MaLR 307 404 -15 9 1507 490 167 9 9 chr4 120889791 120889900 -34740220 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 9 1507 679 208 145 40 chr4 120890323 120890523 -34739597 - ID_B1 SINE B4 0 224 4 9 1507 458 321 0 15 chr4 120891195 120891328 -34738792 - B1F2 SINE Alu 0 149 19 9 1507 262 304 0 80 chr4 120891363 120891438 -34738682 - ID2 SINE ID -13 70 2 9 1507 320 289 28 43 chr4 120891459 120891600 -34738520 - B1F1 SINE Alu -10 139 1 9 1507 533 287 122 5 chr4 120891605 120891801 -34738319 - ID_B1 SINE B4 -4 220 2 9 1507 25 0 0 0 chr4 120891903 120891928 -34738192 + AT_rich Low_complexity Low_complexity 1 25 0 1 1507 311 237 250 17 chr4 120891938 120892054 -34738066 + B1F SINE Alu 6 148 -1 1 1507 675 269 105 1 chr4 120892175 120892375 -34737745 - ID_B1 SINE B4 -47 245 20 1 1507 387 297 25 8 chr4 120892436 120892555 -34737565 - ID_B1 SINE B4 -20 204 84 1 1507 963 106 0 0 chr4 120892558 120892700 -34737420 + (TCCC)n Simple_repeat Simple_repeat 1 142 0 1 1507 1244 89 0 6 chr4 120892700 120892881 -34737239 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1507 347 105 18 0 chr4 120892881 120892938 -34737182 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1 1507 345 24 0 0 chr4 120892959 120893001 -34737119 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1507 521 283 34 27 chr4 120893012 120893161 -34736959 - RSINE1 SINE B4 -14 151 2 1 1507 393 319 68 21 chr4 120893254 120893446 -34736674 - Lx8 LINE L1 -179 7294 7094 1 1507 728 180 34 54 chr4 120893446 120893593 -34736527 - B1_Mus2 SINE Alu -1 146 3 1 1507 645 159 31 23 chr4 120893624 120893753 -34736367 - B3 SINE B2 0 216 87 1 1507 432 302 19 42 chr4 120893809 120893995 -34736125 + MER90a LTR ERV1 4 176 -438 1 1507 335 345 0 0 chr4 120894001 120894088 -34736032 + B1F SINE Alu 12 98 -51 1 1507 1587 175 63 34 chr4 120894456 120894805 -34735315 - ORR1C2 LTR MaLR -2 382 24 1 1507 1296 109 71 4 chr4 120894805 120895044 -34735076 - ORR1C2-int LTR MaLR -82 1427 1173 1 1507 466 135 0 0 chr4 120895070 120895144 -34734976 + B1_Mur1 SINE Alu 58 131 -18 1 1507 400 168 186 18 chr4 120895156 120895265 -34734855 + B3 SINE B2 71 210 -6 1 1507 721 240 93 39 chr4 120895303 120895507 -34734613 - B3 SINE B2 0 216 2 1 1507 767 181 215 0 chr4 120895534 120895711 -34734409 - B3 SINE B2 0 216 2 1 1507 360 260 146 0 chr4 120895888 120896011 -34734109 + B1F SINE Alu 2 142 -7 1 1507 559 279 7 48 chr4 120896011 120896098 -34734022 + RSINE1 SINE B4 3 89 -76 1 1507 2210 139 16 118 chr4 120896098 120896254 -34733866 - RLTR14 LTR ERV1 0 382 234 1 1507 1155 81 0 0 chr4 120896254 120896402 -34733718 + B1_Mus1 SINE Alu 1 148 0 1 1507 2210 139 16 118 chr4 120896402 120896670 -34733450 - RLTR14 LTR ERV1 -149 233 1 1 1507 559 279 7 48 chr4 120896670 120896729 -34733391 + RSINE1 SINE B4 90 143 -22 1 1507 862 237 23 19 chr4 120896857 120897072 -34733048 - ID_B1 SINE B4 -7 217 2 1 1507 390 273 10 0 chr4 120897093 120897192 -34732928 - ID_B1 SINE B4 -26 198 99 1 1507 353 31 0 30 chr4 120897199 120897277 -34732843 - B2_Mm2 SINE B2 0 195 122 1 1507 185 56 0 100 chr4 120897293 120897307 -34732813 + (TTG)n Simple_repeat Simple_repeat 1 14 0 1 1507 1226 35 0 0 chr4 120897307 120897452 -34732668 - B1_Mm SINE Alu -1 146 2 1 1507 185 56 0 100 chr4 120897452 120897477 -34732643 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1507 502 167 0 0 chr4 120897477 120897567 -34732553 - B1_Mus2 SINE Alu 0 147 58 1 1507 753 229 7 0 chr4 120897761 120897905 -34732215 + B1_Mur1 SINE Alu 5 149 0 1 1507 998 123 135 0 chr4 120897909 120898079 -34732041 + B2_Mm2 SINE B2 1 193 -2 1 1507 324 0 0 0 chr4 120898216 120898252 -34731868 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1507 546 320 0 38 chr4 120898258 120898341 -34731779 - B3A SINE B2 -45 153 76 1 1507 1874 159 98 6 chr4 120898341 120898677 -34731443 + ORR1B2 LTR MaLR 1 367 0 1 1507 546 320 0 38 chr4 120898677 120898752 -34731368 - B3A SINE B2 -123 75 1 1 1507 245 276 0 17 chr4 120898787 120898846 -34731274 + ID4 SINE ID 2 59 -24 1 1507 356 189 10 31 chr4 120898898 120898996 -34731124 + ORR1D1 LTR MaLR 34 129 -245 1 1507 932 167 2 19 chr4 120898974 120899174 -34730946 + ORR1D1 LTR MaLR 41 248 -126 1 1507 705 208 20 20 chr4 120899205 120899352 -34730768 + B1_Mur2 SINE Alu 1 147 -2 1 1507 1197 50 0 0 chr4 120900257 120900398 -34729722 - B1_Mus1 SINE Alu -7 141 1 1 1507 337 237 21 31 chr4 120900501 120900597 -34729523 - PB1D9 SINE Alu -16 104 10 1 1507 218 261 0 0 chr4 120900646 120900692 -34729428 + CT-rich Low_complexity Low_complexity 3 48 0 1 1507 231 204 0 0 chr4 120900692 120900746 -34729374 + C-rich Low_complexity Low_complexity 4 57 0 1 1507 789 77 31 1 chr4 120900787 120900911 -34729209 + B2_Mm2 SINE B2 49 181 -14 1 1507 369 337 0 0 chr4 120900941 120901042 -34729078 + RSINE1 SINE B4 3 103 -62 1 1507 280 253 11 0 chr4 120901047 120901134 -34728986 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1507 466 233 117 9 chr4 120901191 120901316 -34728804 + B1F SINE Alu 5 143 -6 1 1507 475 127 0 44 chr4 120901684 120901775 -34728345 - PB1D9 SINE Alu -11 109 23 1 1507 399 21 0 0 chr4 120901775 120901823 -34728297 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1507 358 302 7 93 chr4 120901838 120901977 -34728143 - ID_B1 SINE B4 0 224 98 1 1507 377 237 75 0 chr4 120902079 120902172 -34727948 + PB1D7 SINE Alu 21 120 0 1 1507 294 241 0 0 chr4 120902204 120902291 -34727829 + GA-rich Low_complexity Low_complexity 3 89 0 1 1507 37 39 0 0 chr4 120902840 120902891 -34727229 + AT_rich Low_complexity Low_complexity 1 51 0 1 1507 708 189 15 0 chr4 120902894 120903026 -34727094 - B1_Mur4 SINE Alu -7 143 10 1 1507 198 0 0 0 chr4 120903041 120903063 -34727057 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1507 225 339 0 0 chr4 120903076 120903141 -34726979 + GA-rich Low_complexity Low_complexity 3 67 0 1 1507 425 241 25 49 chr4 120903179 120903301 -34726819 + PB1D9 SINE Alu 1 119 -1 1 1507 27 29 0 0 chr4 120903303 120903337 -34726783 + AT_rich Low_complexity Low_complexity 1 34 0 1 1507 2660 166 4 17 chr4 120904356 120904834 -34725286 - Lx2B LINE L1 -1 6999 6528 1 1507 564 234 0 30 chr4 120905192 120905324 -34724796 + RSINE1 SINE B4 14 141 -24 1 1507 324 0 0 0 chr4 120905325 120905361 -34724759 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1507 30 27 0 0 chr4 120905370 120905407 -34724713 + AT_rich Low_complexity Low_complexity 1 37 0 1 1507 506 321 42 32 chr4 120905417 120905633 -34724487 + B4A SINE B4 1 218 -74 1 1507 608 227 0 8 chr4 120905669 120905789 -34724331 - B3A SINE B2 -79 119 1 1 1507 833 200 7 0 chr4 120905848 120905993 -34724127 + B1_Mur1 SINE Alu 3 148 -1 1 1507 615 223 13 52 chr4 120906037 120906209 -34723911 - ID_B1 SINE B4 -4 220 56 1 1507 626 211 8 0 chr4 120906520 120906643 -34723477 + B1_Mur1 SINE Alu 2 125 -24 1 1507 600 14 0 0 chr4 120906917 120906986 -34723134 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1507 252 0 0 0 chr4 120906992 120907020 -34723100 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 1 1507 829 217 9 66 chr4 120907618 120907830 -34722290 + MTD LTR MaLR 1 200 -219 1 1507 481 200 90 0 chr4 120907834 120907934 -34722186 - B3 SINE B2 -107 109 1 1 1507 26 30 0 0 chr4 120908096 120908129 -34721991 + AT_rich Low_complexity Low_complexity 1 33 0 1 1507 1619 209 29 37 chr4 120908240 120908617 -34721503 - ORR1D1 LTR MaLR 0 374 1 1 1507 711 290 78 5 chr4 120908620 120908838 -34721282 - Lx8 LINE L1 -459 7014 6781 1 1507 364 258 0 47 chr4 120909091 120909197 -34720923 - RSINE1 SINE B4 -55 110 10 1 1507 537 178 140 52 chr4 120909241 120909377 -34720743 + B1_Mur2 SINE Alu 1 148 -1 1 1507 530 248 84 7 chr4 120909396 120909538 -34720582 + RSINE1 SINE B4 2 154 -11 1 1507 345 24 0 0 chr4 120909548 120909590 -34720530 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 1 1507 225 0 0 0 chr4 120910542 120910567 -34719553 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1507 511 282 160 0 chr4 120910966 120911122 -34718998 - ID_B1 SINE B4 -32 192 12 1 1507 298 159 0 22 chr4 120911995 120912085 -34718035 + GA-rich Low_complexity Low_complexity 3 90 0 1 1507 189 0 0 0 chr4 120912093 120912114 -34718006 + (TGG)n Simple_repeat Simple_repeat 3 23 0 1 1507 644 192 0 103 chr4 120912114 120912259 -34717861 + B1_Mm SINE Alu 18 147 0 1 1507 548 291 48 12 chr4 120912344 120912511 -34717609 - B3A SINE B2 -1 197 25 1 1507 466 271 34 0 chr4 120912525 120912643 -34717477 + RSINE1 SINE B4 3 124 -41 1 1507 786 185 0 0 chr4 120913072 120913207 -34716913 + B1_Mus1 SINE Alu 2 136 -12 1 1507 1511 195 56 105 chr4 120913317 120913782 -34716338 - RMER10A LTR ERVL 0 442 1 1 1507 242 338 0 0 chr4 120914665 120914733 -34715387 - BC1_Mm scRNA scRNA -71 81 14 1 1507 636 241 21 21 chr4 120914760 120914900 -34715220 - B1_Mur1 SINE Alu -9 140 1 1 1507 409 328 8 0 chr4 120915067 120915186 -34714934 + PB1D7 SINE Alu 1 120 0 1 1507 718 121 91 0 chr4 120915221 120915353 -34714767 - B1_Mur4 SINE Alu -1 149 6 1 1507 2410 121 49 21 chr4 120915682 120916070 -34714050 - Lx4A LINE L1 -3 7055 6657 1 1507 1426 118 4 93 chr4 120916071 120916351 -34713769 - L1_Mur2 LINE L1 -433 5444 5190 1 1507 255 200 18 18 chr4 120916352 120916408 -34713712 + MER3 DNA MER1_type 31 86 -123 1 1507 5751 90 19 1 chr4 120916623 120917415 -34712705 - L1_Mus4 LINE L1 -4 6632 5827 1 1507 2747 45 0 3 chr4 120917432 120917764 -34712356 - L1_Mus1 LINE L1 0 6567 6237 1 1507 204 111 0 0 chr4 120917764 120917800 -34712320 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1507 7443 77 6 10 chr4 120917800 120917817 -34712303 - L1_Mus1 LINE L1 0 6567 6556 1 1507 2733 36 45 3 chr4 120917817 120918149 -34711971 + ORR1A0 LTR MaLR 1 346 0 1 1507 16682 92 3 4 chr4 120918149 120921144 -34708976 - L1_Mus1 LINE L1 -12 6555 3560 1 1507 39817 34 0 0 chr4 120921142 120926555 -34703565 - L1Md_T LINE L1 0 6582 1170 1 1507 5660 186 22 28 chr4 120926561 120928487 -34701633 - L1Md_T LINE L1 -5411 1205 99 1 1507 16328 110 11 1 chr4 120928483 120931549 -34698571 - L1Md_F LINE L1 -2309 3574 477 1 1507 33343 97 11 6 chr4 120931550 120936831 -34693289 - L1Md_A LINE L1 -37 5849 446 1 1507 18078 150 32 11 chr4 120936829 120940345 -34689775 - L1VL4 LINE L1 -1352 4531 951 1 1507 1197 75 0 0 chr4 120940352 120940499 -34689621 - B1_Mm SINE Alu 0 147 1 1 1507 11721 62 0 0 chr4 120940521 120941974 -34688146 + L1Md_F2 LINE L1 4134 5586 -297 1 1507 8222 48 2 2 chr4 120941974 120942970 -34687150 + L1Md_F2 LINE L1 5587 6582 0 1 1507 1186 297 46 52 chr4 120942972 120943554 -34686566 - L1VL4 LINE L1 -5713 944 366 1 1507 4813 36 2 0 chr4 120943636 120944169 -34685951 + L1Md_T LINE L1 6049 6582 0 1 1507 320 305 61 55 chr4 120944176 120944339 -34685781 - Lx8 LINE L1 -116 7357 7194 1 1507 400 333 0 0 chr4 120944395 120944503 -34685617 + PB1D10 SINE Alu 1 108 -9 1 1507 243 198 20 50 chr4 120944511 120944592 -34685528 + (CAAA)n Simple_repeat Simple_repeat 3 81 0 1 1507 201 39 0 0 chr4 120944592 120944618 -34685502 + (CCAA)n Simple_repeat Simple_repeat 3 28 0 1 1507 243 198 20 50 chr4 120944618 120944637 -34685483 + (CAAA)n Simple_repeat Simple_repeat 2 20 0 1 1507 675 211 8 0 chr4 120944649 120944777 -34685343 + B1_Mur1 SINE Alu 21 149 0 1 1507 259 311 114 19 chr4 120944815 120944920 -34685200 - PB1D7 SINE Alu -5 115 1 1 1507 344 294 27 54 chr4 120944920 120945037 -34685083 - MER3 DNA MER1_type -97 112 7 1 1507 857 207 125 10 chr4 120945090 120945290 -34684830 + ID_B1 SINE B4 2 224 0 1 1507 444 297 13 57 chr4 120945583 120945603 -34684517 + ID_B1 SINE B4 65 214 -10 1 1507 638 230 29 15 chr4 120945603 120945740 -34684380 + B1F2 SINE Alu 1 139 -10 1 1507 226 233 33 0 chr4 120945759 120945819 -34684301 - B1_Mus1 SINE Alu -86 62 1 1 1507 405 200 0 47 chr4 120945887 120945993 -34684127 + ID4_ SINE ID 7 104 -48 1 1507 946 255 9 9 chr4 120946031 120946241 -34683879 + B3 SINE B2 1 210 -6 1 1507 231 125 0 0 chr4 120946272 120946312 -34683808 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 1507 210 71 0 0 chr4 120946420 120946448 -34683672 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1 1507 509 250 0 0 chr4 120947055 120947159 -34682961 + B1_Mus2 SINE Alu 1 104 -43 1 1507 3172 62 15 0 chr4 120947164 120947565 -34682555 + L1_Mus3 LINE L1 5587 5993 -645 1 1507 1138 88 3 16 chr4 120948026 120948195 -34681925 + L1_Mus4 LINE L1 5629 5816 -2066 1 1507 227 278 104 43 chr4 120948576 120948731 -34681389 + LTRIS4 LTR ERV1 376 533 -54 1 1507 382 78 0 0 chr4 120948749 120948800 -34681320 + L1_Mus4 LINE L1 5988 6038 -600 1 1507 216 0 0 0 chr4 120948808 120948832 -34681288 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1507 4727 78 2 28 chr4 120949271 120949874 -34680246 + LTRIS_Mus LTR ERV1 1 587 0 1 1507 1037 144 0 0 chr4 120950604 120950743 -34679377 + B1_Mus1 SINE Alu 1 139 -9 1 1507 211 125 41 20 chr4 120950765 120950814 -34679306 + A-rich Low_complexity Low_complexity 1 50 0 1 1507 1650 283 29 48 chr4 120950875 120951525 -34678595 + L1_Rod LINE L1 3798 4435 -1412 1 1507 306 277 0 8 chr4 120951525 120951548 -34678572 + ORR1B1-int LTR MaLR 625 646 -863 1 1507 907 98 0 0 chr4 120951548 120951670 -34678450 + B1_Mus1 SINE Alu 1 122 -26 1 1507 553 217 13 6 chr4 120951671 120951829 -34678291 + L1M3 LINE L1 4518 4676 -1464 1 1507 7563 83 12 19 chr4 120951926 120952106 -34678014 - L1VL2 LINE L1 -1586 2029 1857 1 1507 3867 32 0 2 chr4 120952106 120952538 -34677582 - L1Md_F2 LINE L1 0 6582 6152 1 1507 7563 81 8 20 chr4 120952538 120953787 -34676333 - L1VL2 LINE L1 -1759 1856 617 1 1507 3360 161 3 20 chr4 120953782 120953950 -34676170 - L1_Mur2 LINE L1 -177 5700 5542 1 1507 5649 100 54 40 chr4 120953950 120954825 -34675295 - RMER17D LTR ERVK -2 887 1 1 1507 3360 161 3 20 chr4 120954825 120955250 -34674870 - L1_Mur2 LINE L1 -336 5541 5117 1 1507 21 0 0 0 chr4 120955250 120955271 -34674849 + AT_rich Low_complexity Low_complexity 1 21 0 1 1507 471 290 8 16 chr4 120955289 120955415 -34674705 - B1_Mm SINE Alu -22 125 1 1 1507 446 297 17 0 chr4 120955517 120955635 -34674485 - ID_B1 SINE B4 -23 201 82 1 1507 430 306 34 13 chr4 120955757 120955906 -34674214 - RSINE1 SINE B4 -6 159 8 1 1507 273 252 309 14 chr4 120956222 120956439 -34673681 + L2a LINE L2 2485 2765 -654 1 1507 404 289 49 8 chr4 120956513 120956635 -34673485 + RSINE1 SINE B4 37 163 -2 1 1507 568 303 28 22 chr4 120956669 120956848 -34673272 + B3A SINE B2 1 180 -18 1 1507 7799 135 37 61 chr4 120957082 120958315 -34671805 - Lx2 LINE L1 0 6997 5787 1 1507 1081 112 14 0 chr4 120958315 120958458 -34671662 - B1_Mus2 SINE Alu 0 147 3 1 1507 7799 145 26 71 chr4 120958458 120958754 -34671366 - Lx2 LINE L1 -97 5786 5505 1 1507 5313 175 26 2 chr4 120958756 120958888 -34671232 + L1_Mur1 LINE L1 4506 4646 -1240 1 1507 243 0 0 0 chr4 120958888 120958915 -34671205 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1507 5313 175 26 2 chr4 120958915 120959755 -34670365 + L1_Mur1 LINE L1 4647 5501 -385 1 1507 675 108 22 58 chr4 120960227 120960365 -34669755 - L1_Mus3 LINE L1 0 6638 6506 1 1507 436 102 0 0 chr4 120960365 120960424 -34669696 + L1_Mus3 LINE L1 6358 6416 -222 1 1507 6986 47 4 0 chr4 120960465 120961270 -34668850 - L1Md_F2 LINE L1 -2 6580 5773 1 1507 222 150 0 0 chr4 120961457 120961497 -34668623 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1507 38282 48 5 3 chr4 120961523 120967758 -34662362 - L1Md_T LINE L1 0 6585 243 1 1507 6068 108 0 1 chr4 120967783 120968590 -34661530 - L1_Mus1 LINE L1 -1 6566 5761 1 1507 456 228 11 0 chr4 120968899 120968991 -34661129 - B1_Mur1 SINE Alu -18 131 39 1 1507 357 332 189 15 chr4 120969165 120969498 -34660622 + L2a LINE L2 2954 3344 -82 1 1507 687 287 74 124 chr4 120970284 120970729 -34659391 + RLTR23 LTR ERV1 8 430 0 1 1507 723 210 27 27 chr4 120970862 120971009 -34659111 + B1_Mus2 SINE Alu 1 147 0 1 1507 358 287 148 0 chr4 120971629 120971744 -34658376 + B1_Mur3 SINE Alu 3 134 -15 1 1507 195 42 0 0 chr4 120971750 120971774 -34658346 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1507 388 283 103 70 chr4 120972478 120972721 -34657399 - RMER2 LTR ERV1 -27 540 290 1 1507 2606 99 11 11 chr4 120973552 120973909 -34656211 - L1Md_F2 LINE L1 -10 6572 6216 1 1507 1817 77 0 0 chr4 120973909 120974142 -34655978 + L1_Mm LINE L1 4913 5145 -738 1 1507 10457 99 16 14 chr4 120974141 120976224 -34653896 - L1Md_A LINE L1 -3235 2648 565 1 1507 1279 151 4 4 chr4 120976225 120976451 -34653669 - L1_Mur1 LINE L1 -3231 2655 2430 1 1507 8224 45 3 8 chr4 120976589 120977658 -34652462 - L1Md_F2 LINE L1 0 6582 5519 1 1507 604 246 22 0 chr4 120978134 120978272 -34651848 + B1_Mus1 SINE Alu 1 141 -7 1 1507 903 267 20 72 chr4 120978713 120979126 -34650994 - RLTR11B LTR ERVK -35 406 1 1 1508 212 284 15 0 chr4 120979640 120979707 -34650413 + GA-rich Low_complexity Low_complexity 1 68 0 1 1508 186 43 0 0 chr4 120979955 120979978 -34650142 + (CTG)n Simple_repeat Simple_repeat 2 24 0 1 1508 33269 70 3 14 chr4 120980056 120982068 -34648052 + L1Md_F2 LINE L1 405 2459 -3427 1 1508 4092 18 9 0 chr4 120982068 120982514 -34647606 - L1Md_T LINE L1 0 6582 6133 1 1508 33269 72 2 10 chr4 120982514 120985638 -34644482 + L1Md_F2 LINE L1 2460 5589 -297 1 1508 8512 50 2 8 chr4 120985638 120986640 -34643480 + L1Md_F2 LINE L1 5590 6585 0 1 1508 542 323 8 0 chr4 120987086 120987216 -34642904 - B1_Mus1 SINE Alu -15 133 3 1 1508 579 239 8 0 chr4 120987333 120987450 -34642670 - ID_B1 SINE B4 -26 198 81 1 1508 298 346 86 22 chr4 120987546 120987685 -34642435 - RSINE1 SINE B4 -12 153 6 1 1508 297 301 190 4 chr4 120987990 120988227 -34641893 + L2 LINE L2 2485 2765 -654 1 1508 375 348 7 48 chr4 120988266 120988411 -34641709 + RSINE1 SINE B4 23 161 -4 1 1508 440 280 86 13 chr4 120988437 120988589 -34641531 + B3A SINE B2 18 180 -18 1 1508 2838 174 60 36 chr4 120988867 120989417 -34640703 - RMER2 LTR ERV1 -4 563 1 1 1508 365 267 213 64 chr4 120989566 120989754 -34640366 + B3 SINE B2 1 216 0 1 1508 629 297 23 65 chr4 120990030 120990246 -34639874 + B4A SINE B4 1 207 -85 1 1508 22 0 0 0 chr4 120990304 120990326 -34639794 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 364 257 5 197 chr4 120990331 120990544 -34639576 + B2_Mm2 SINE B2 5 176 -19 1 1508 1265 203 128 33 chr4 120991044 120991338 -34638782 + ORR1D2 LTR MaLR 3 333 -37 1 1508 3075 40 0 3 chr4 120991338 120991689 -34638431 - L1Md_F2 LINE L1 -10 6572 6223 1 1508 1265 203 128 33 chr4 120991689 120991730 -34638390 + ORR1D2 LTR MaLR 334 370 0 1 1508 439 294 18 35 chr4 120991764 120991877 -34638243 + PB1D10 SINE Alu 7 117 0 1 1508 555 319 25 0 chr4 120992140 120992303 -34637817 - B3 SINE B2 -4 212 46 1 1508 259 267 133 0 chr4 120992329 120992434 -34637686 - RCHARR1 DNA MER1_type -469 505 387 1 1508 6165 148 4 5 chr4 120992459 120993441 -34636679 - L1_Mus3 LINE L1 -1 6637 5657 1 1508 5153 102 7 0 chr4 120993570 120994253 -34635867 + L1_Mus1 LINE L1 5880 6567 0 1 1508 203 279 61 37 chr4 120994277 120994359 -34635761 + L2a LINE L2 1981 2064 -1355 1 1508 197 65 32 0 chr4 120994412 120994443 -34635677 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1508 231 317 39 19 chr4 120994867 120994970 -34635150 + PB1D10 SINE Alu 5 109 -8 1 1508 245 268 19 67 chr4 120995074 120995085 -34635035 - YREP_Mm Unknown Unknown -1493 319 314 1 1508 602 243 35 14 chr4 120995085 120995227 -34634893 + B1F1 SINE Alu 3 147 -2 1 1508 522 299 7 34 chr4 120995469 120995618 -34634502 + RSINE1 SINE B4 20 164 -1 1 1508 441 0 0 0 chr4 120995619 120995668 -34634452 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1508 534 245 0 0 chr4 120996318 120996424 -34633696 - B1F2 SINE Alu -14 135 30 1 1508 202 287 184 9 chr4 120996650 120996759 -34633361 + L2a LINE L2 3033 3160 -266 1 1508 14262 85 3 7 chr4 120997600 121000000 -34630120 + L1Md_Gf LINE L1 643 3130 -2756 1 1508 15304 41 0 1 chr4 121000000 121001834 -34628286 + L1Md_F3 LINE L1 3128 4959 -924 1 1508 2057 46 0 0 chr4 121001846 121002087 -34628033 + L1Md_F3 LINE L1 5345 5585 -298 1 1508 8836 39 1 11 chr4 121002088 121003105 -34627015 + L1Md_F3 LINE L1 5587 6584 0 1 1508 251 275 14 14 chr4 121003132 121003202 -34626918 + B4A SINE B4 85 154 -138 2 1508 6278 156 13 37 chr4 121003439 121004568 -34625552 + Lx3C LINE L1 5873 6974 -2 3 1508 597 250 8 0 chr4 121005537 121005661 -34624459 - MERVK26-int LTR ERVK -6638 281 157 4 1508 4596 124 20 80 chr4 121005700 121006499 -34623621 - RMER17A LTR ERVK 0 751 1 5 1508 4665 31 0 2 chr4 121006511 121007025 -34623095 - L1Md_T LINE L1 0 6582 6070 6 1508 6264 100 31 26 chr4 121007028 121007991 -34622129 - RMER17A-int LTR ERVK -37 1691 724 5 1508 257 191 0 21 chr4 121008007 121008055 -34622065 - B3A SINE B2 -147 51 5 7 1508 445 323 14 36 chr4 121008106 121008244 -34621876 - B1_Mur2 SINE Alu -2 147 13 8 1508 765 0 0 0 chr4 121008322 121008407 -34621713 + (TTTCC)n Simple_repeat Simple_repeat 1 85 0 9 1508 1515 28 0 0 chr4 121008407 121008587 -34621533 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1508 316 307 11 0 chr4 121008609 121008697 -34621423 - ID_B1 SINE B4 -34 190 102 1 1508 284 378 35 7 chr4 121008811 121008955 -34621165 - RSINE1 SINE B4 -10 155 8 1 1508 379 411 0 0 chr4 121009478 121009602 -34620518 + RSINE1 SINE B4 14 137 -28 1 1508 368 293 71 0 chr4 121009692 121009791 -34620329 + B3A SINE B2 38 143 -55 1 1508 228 111 0 0 chr4 121009816 121009852 -34620268 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 1 1508 361 275 21 38 chr4 121010123 121010229 -34619891 + PB1D7 SINE Alu 3 110 -10 1 1508 216 286 36 0 chr4 121010393 121010449 -34619671 + B3 SINE B2 75 132 -84 1 1508 578 332 9 93 chr4 121010765 121010991 -34619129 + B4A SINE B4 1 207 -85 1 1508 459 92 0 0 chr4 121011007 121011072 -34619048 + (CCA)n Simple_repeat Simple_repeat 1 65 0 1 1508 639 219 14 7 chr4 121011134 121011272 -34618848 + B1_Mur3 SINE Alu 9 147 -2 2 1508 414 331 48 16 chr4 121011320 121011507 -34618613 + B3A SINE B2 2 194 -4 2 1508 426 39 0 0 chr4 121011606 121011658 -34618462 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1508 192 284 29 29 chr4 121011820 121011889 -34618231 - MIRc SINE MIR -168 100 32 2 1508 805 238 21 11 chr4 121012026 121012213 -34617907 + ORR1D2 LTR MaLR 1 189 -181 2 1508 7440 66 26 4 chr4 121012254 121013210 -34616910 - L1Md_F2 LINE L1 -19 6563 5587 2 1508 529 230 43 14 chr4 121013220 121013361 -34616759 + ORR1D2 LTR MaLR 226 370 0 2 1508 312 315 62 0 chr4 121013394 121013483 -34616637 + B1F1 SINE Alu 5 98 -51 2 1508 582 296 16 63 chr4 121013761 121013952 -34616168 - B3 SINE B2 0 216 35 2 1508 1257 280 87 21 chr4 121013940 121014422 -34615698 - RCHARR1 DNA MER1_type -459 515 2 2 1508 225 184 20 0 chr4 121014550 121014599 -34615521 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1508 378 328 77 33 chr4 121014625 121014808 -34615312 + B3A SINE B2 6 196 -2 3 1508 565 302 6 51 chr4 121014835 121014964 -34615156 - B3 SINE B2 -26 190 63 3 1508 1337 230 138 14 chr4 121014964 121015312 -34614808 + ORR1B1 LTR MaLR 3 393 -1 3 1508 565 302 6 51 chr4 121015312 121015360 -34614760 - B3 SINE B2 -154 62 21 3 1508 368 310 76 23 chr4 121015439 121015571 -34614549 + B1_Mur1 SINE Alu 10 148 -1 3 1508 607 242 129 21 chr4 121015573 121015767 -34614353 + B3 SINE B2 2 216 0 3 1508 640 269 122 38 chr4 121015931 121016406 -34613714 + L1MB5 LINE L1 5653 6165 -9 3 1508 450 333 69 6 chr4 121016482 121016657 -34613463 + ID_B1 SINE B4 1 186 -38 3 1508 219 346 0 0 chr4 121016669 121016721 -34613399 + B4A SINE B4 83 134 -158 3 1508 447 52 0 0 chr4 121017038 121017096 -34613024 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1508 2944 207 21 29 chr4 121017404 121018070 -34612050 + RLTR22_Mur LTR ERVK 1 661 -1187 3 1508 6589 128 55 14 chr4 121018079 121018166 -34611954 - Lx3_Mus LINE L1 0 7009 6907 4 1508 207 0 0 0 chr4 121018166 121018189 -34611931 + (CACCC)n Simple_repeat Simple_repeat 5 27 0 4 1508 6589 128 55 14 chr4 121018189 121019160 -34610960 - Lx3_Mus LINE L1 -103 6906 5909 4 1508 396 0 0 0 chr4 121019160 121019204 -34610916 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 4 1508 1050 8 0 0 chr4 121019204 121019323 -34610797 + (TTCCC)n Simple_repeat Simple_repeat 3 121 0 4 1508 721 142 90 0 chr4 121019326 121019460 -34610660 - Lx3_Mus LINE L1 -125 6884 6739 4 1508 423 0 0 0 chr4 121019468 121019515 -34610605 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 4 1508 786 11 0 0 chr4 121019515 121019605 -34610515 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 4 1508 21716 115 13 15 chr4 121019621 121021296 -34608824 - Lx3_Mus LINE L1 -1130 5920 4253 4 1508 4414 162 17 28 chr4 121021296 121021621 -34608499 - RMER17D2 LTR ERVK 0 809 483 4 1508 605 69 0 11 chr4 121021621 121021709 -34608411 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1508 4414 162 17 28 chr4 121021709 121022201 -34607919 - RMER17D2 LTR ERVK -327 482 1 4 1508 21716 114 13 15 chr4 121022201 121023988 -34606132 - Lx3_Mus LINE L1 -1634 4252 2469 4 1508 23043 91 3 22 chr4 121023980 121026212 -34603908 - L1Md_A LINE L1 -1361 4522 2306 4 1508 1236 75 0 0 chr4 121026212 121026358 -34603762 + B1_Mus2 SINE Alu 2 147 0 5 1508 23043 118 11 31 chr4 121026358 121028512 -34601608 - L1Md_A LINE L1 -3578 2305 238 4 1508 4040 112 0 7 chr4 121028512 121029086 -34601034 - L1Md_F LINE L1 -5660 859 290 5 1508 729 282 19 88 chr4 121029135 121029554 -34600566 + RLTR11B LTR ERVK 1 404 -37 5 1508 567 264 28 0 chr4 121029997 121030141 -34599979 - B1_Mus1 SINE Alu 0 148 1 5 1508 11053 94 1 1 chr4 121030310 121031839 -34598281 - L1_Mm LINE L1 -771 5112 3583 5 1508 6599 58 8 36 chr4 121031830 121032867 -34597253 - L1Md_A LINE L1 -4465 1418 416 5 1508 655 187 43 14 chr4 121032868 121033009 -34597111 + RLTR25A LTR ERVK 360 504 -599 5 1508 578 80 23 0 chr4 121033012 121033100 -34597020 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 5 1508 752 244 6 0 chr4 121033104 121033272 -34596848 + RLTR25A LTR ERVK 509 677 -426 5 1508 414 0 0 0 chr4 121033273 121033319 -34596801 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1508 2528 184 25 138 chr4 121033523 121034275 -34595845 + RLTR22_Mus LTR ERVK 1 667 -1141 5 1508 888 152 0 0 chr4 121034288 121034439 -34595681 - Lx3_Mus LINE L1 0 7009 6859 6 1508 252 332 147 20 chr4 121034572 121034769 -34595351 - L2 LINE L2 -1103 2316 2095 6 1508 5214 102 1 1 chr4 121035089 121035777 -34594343 - L1_Mus1 LINE L1 0 6567 5880 6 1508 1121 228 19 139 chr4 121035910 121036328 -34593792 + RLTR25A LTR ERVK 733 1100 -3 5 1508 261 287 101 73 chr4 121036463 121036572 -34593548 - B1_Mur1 SINE Alu -37 112 1 6 1508 253 340 143 19 chr4 121036665 121036923 -34593197 + L2a LINE L2 3055 3344 -82 6 1508 189 280 38 113 chr4 121037193 121037326 -34592794 + MIR3 SINE MIR 3 125 -83 6 1508 416 334 57 13 chr4 121037515 121037716 -34592404 + RMER20B LTR ERVK 186 417 -210 6 1508 2558 169 35 33 chr4 121037791 121038286 -34591834 - RLTR26 LTR ERVK 0 642 141 6 1508 1645 91 9 5 chr4 121038286 121038508 -34591612 - MERVK26-int LTR ERVK -2579 4340 4118 6 1508 752 241 72 14 chr4 121038632 121038851 -34591269 + RMER1B Other Other 47 386 -680 6 1508 1768 256 103 90 chr4 121038865 121039931 -34590189 + RMER1B Other Other 19 1066 0 7 1508 230 341 83 57 chr4 121039967 121040160 -34589960 + B3A SINE B2 1 198 0 7 1508 599 279 35 64 chr4 121040419 121040622 -34589498 + B4A SINE B4 1 197 -95 7 1508 306 138 0 0 chr4 121040670 121040728 -34589392 + (CAT)n Simple_repeat Simple_repeat 3 60 0 7 1508 396 363 43 29 chr4 121040783 121040990 -34589130 + B3A SINE B2 4 213 -3 7 1508 583 241 0 41 chr4 121041005 121041152 -34588968 + B1_Mur4 SINE Alu 10 150 0 7 1508 985 268 121 21 chr4 121041641 121041973 -34588147 + ORR1D2 LTR MaLR 6 370 0 7 1508 392 277 21 0 chr4 121042006 121042100 -34588020 + PB1D10 SINE Alu 5 100 -17 7 1508 681 202 185 11 chr4 121042400 121042664 -34587456 - RMER4B LTR ERVK 0 585 276 7 1508 2042 135 3 0 chr4 121042678 121042996 -34587124 + ORR1A2 LTR MaLR 1 319 -8 7 1508 1240 152 8 29 chr4 121042998 121043236 -34586884 - RMER4B LTR ERVK -343 242 10 7 1508 652 273 22 0 chr4 121043241 121043380 -34586740 - B3 SINE B2 -25 191 50 8 1508 897 290 112 35 chr4 121043415 121043872 -34586248 - RCHARR1 DNA MER1_type -480 494 3 8 1508 333 0 0 0 chr4 121043987 121044024 -34586096 + (TC)n Simple_repeat Simple_repeat 2 38 0 8 1508 231 36 0 0 chr4 121044024 121044051 -34586069 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1508 481 183 208 40 chr4 121044100 121044225 -34585895 + B1_Mur4 SINE Alu 5 150 0 8 1508 546 43 0 0 chr4 121044230 121044299 -34585821 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 8 1508 250 311 70 78 chr4 121044299 121044414 -34585706 + B3A SINE B2 29 142 -56 8 1508 634 297 30 0 chr4 121044432 121044634 -34585486 - B3 SINE B2 -7 209 2 8 1508 464 250 75 8 chr4 121044662 121044795 -34585325 + B1_Mur2 SINE Alu 7 148 -1 8 1508 429 250 188 0 chr4 121044798 121044910 -34585210 + B3 SINE B2 3 135 -81 8 1508 540 0 0 0 chr4 121044910 121044970 -34585150 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 9 1508 546 275 96 84 chr4 121044972 121045064 -34585056 + L1MB5 LINE L1 5798 5890 -284 9 1508 1160 132 63 0 chr4 121045064 121045238 -34584882 + B2_Mm1a SINE B2 2 186 -7 9 1508 546 275 96 84 chr4 121045238 121045490 -34584630 + L1MB5 LINE L1 5891 6146 -28 9 1508 3789 64 2 0 chr4 121045539 121045992 -34584128 - L1Md_T LINE L1 -2 6580 6127 9 1508 4291 36 0 2 chr4 121045992 121046492 -34583628 + L1Md_T LINE L1 5625 6124 -458 9 1508 545 344 22 0 chr4 121046542 121046722 -34583398 + ID_B1 SINE B4 5 188 -36 9 1508 6817 128 13 42 chr4 121047044 121048181 -34581939 + Lx3C LINE L1 5873 6976 0 9 1508 310 319 86 52 chr4 121049751 121050042 -34580078 - RMER20B LTR ERVK -163 479 187 9 1508 246 247 0 105 chr4 121050030 121050125 -34579995 + MLT2B4 LTR ERVL 236 320 -236 9 1508 258 207 0 0 chr4 121050470 121050528 -34579592 + CT-rich Low_complexity Low_complexity 1 58 0 9 1508 2036 108 3 74 chr4 121051316 121051667 -34578453 - IAPLTR1a_Mm LTR ERVK -11 326 1 9 1508 745 206 14 0 chr4 121051697 121051838 -34578282 + B1_Mus1 SINE Alu 6 148 0 1 1508 2046 133 67 53 chr4 121051901 121052259 -34577861 + RLTR8 LTR ERVK 1 363 -2 1 1508 2129 155 93 3 chr4 121052261 121052565 -34577555 + SRV_MM-int LTR ERVK 1 333 -5834 1 1508 278 26 0 25 chr4 121052565 121052605 -34577515 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1508 2129 130 255 1 chr4 121052605 121052941 -34577179 + SRV_MM-int LTR ERVK 334 752 -5415 1 1508 544 202 16 56 chr4 121052941 121053067 -34577053 + RLTR8 LTR ERVK 245 365 0 1 1508 4303 147 71 3 chr4 121053067 121053771 -34576349 + SRV_MM-int LTR ERVK 1 752 -5415 1 1508 605 161 15 92 chr4 121053772 121053902 -34576218 + RLTR8 LTR ERVK 246 365 0 1 1508 4495 141 7 1 chr4 121053902 121054620 -34575500 + SRV_MM-int LTR ERVK 1 752 -5415 1 1508 444 204 113 61 chr4 121054620 121054702 -34575418 + RLTR8 LTR ERVK 245 319 -46 1 1508 414 0 0 0 chr4 121054702 121054748 -34575372 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1508 444 204 113 61 chr4 121054748 121054780 -34575340 + RLTR8 LTR ERVK 320 364 -1 1 1508 241 312 26 0 chr4 121055627 121055704 -34574416 + GA-rich Low_complexity Low_complexity 2 80 0 1 1508 6372 131 1 138 chr4 121056286 121056506 -34573614 + L1_Mus2 LINE L1 5034 5238 -645 1 1508 360 180 19 29 chr4 121056506 121056609 -34573511 + (CATA)n Simple_repeat Simple_repeat 3 104 0 1 1508 6372 131 1 138 chr4 121056609 121057105 -34573015 + L1_Mus2 LINE L1 5239 5701 -182 1 1508 1445 147 0 0 chr4 121057105 121057316 -34572804 - L1_Mus2 LINE L1 -1 6565 6355 1 1508 6372 107 3 57 chr4 121057316 121058209 -34571911 + L1_Mus2 LINE L1 5702 6566 0 1 1508 265 191 0 21 chr4 121058258 121058306 -34571814 - B3A SINE B2 -147 51 5 1 1508 411 341 0 8 chr4 121058378 121058511 -34571609 - B1_Mm SINE Alu -15 132 1 1 1508 513 212 0 0 chr4 121058577 121058695 -34571425 + T-rich Low_complexity Low_complexity 1 118 0 1 1508 352 281 24 0 chr4 121058702 121058784 -34571336 - ID_B1 SINE B4 -34 190 107 1 1508 273 325 79 48 chr4 121058929 121059055 -34571065 - RSINE1 SINE B4 -28 137 8 1 1508 298 275 78 21 chr4 121059367 121059508 -34570612 + L2 LINE L2 2480 2628 -791 1 1508 469 385 7 0 chr4 121059661 121059796 -34570324 + RSINE1 SINE B4 8 143 -22 1 1508 332 314 85 7 chr4 121059857 121059998 -34570122 + B3A SINE B2 13 164 -34 1 1508 198 0 0 0 chr4 121060010 121060032 -34570088 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 1 1508 450 0 0 0 chr4 121060099 121060149 -34569971 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1508 352 279 19 43 chr4 121060342 121060459 -34569661 + PB1D7 SINE Alu 3 120 0 1 1508 225 281 35 0 chr4 121060615 121060672 -34569448 + B3 SINE B2 78 136 -80 1 1508 23 0 0 0 chr4 121060704 121060727 -34569393 + AT_rich Low_complexity Low_complexity 1 23 0 1 1508 550 324 13 97 chr4 121060984 121061210 -34568910 + B4A SINE B4 1 207 -85 1 1508 390 42 0 0 chr4 121061216 121061264 -34568856 + (CAT)n Simple_repeat Simple_repeat 1 48 0 1 1508 24 32 0 0 chr4 121061289 121061320 -34568800 + AT_rich Low_complexity Low_complexity 1 31 0 1 1508 531 246 23 0 chr4 121061323 121061453 -34568667 + B1_Mur3 SINE Alu 9 141 -8 1 1508 532 301 0 0 chr4 121061492 121061628 -34568492 + B3A SINE B2 2 137 -61 1 1508 834 273 101 8 chr4 121061755 121062013 -34568107 + ORR1D2 LTR MaLR 89 370 0 1 1508 294 300 62 0 chr4 121062046 121062126 -34567994 + B1F1 SINE Alu 5 89 -60 1 1508 680 270 72 39 chr4 121062420 121062628 -34567492 - B3 SINE B2 0 216 2 1 1508 1289 270 90 7 chr4 121062631 121063086 -34567034 - RCHARR1 DNA MER1_type -479 495 3 1 1508 1198 161 0 5 chr4 121063351 121063551 -34566569 + L1VL1 LINE L1 46 244 -6178 1 1508 283 304 176 4 chr4 121063878 121064122 -34565998 + L2 LINE L2 2485 2770 -649 1 1508 453 365 29 0 chr4 121064176 121064313 -34565807 + RSINE1 SINE B4 21 161 -4 1 1508 438 266 24 16 chr4 121064364 121064490 -34565630 + B3A SINE B2 50 176 -22 1 1508 2467 176 12 16 chr4 121064769 121065296 -34564824 - RMER2 LTR ERV1 -5 562 1 1 1508 222 231 0 19 chr4 121065296 121065349 -34564771 + B1_Mus1 SINE Alu 32 83 -65 1 1508 376 261 213 64 chr4 121065445 121065633 -34564487 + B3 SINE B2 1 216 0 1 1508 525 327 23 60 chr4 121065915 121066130 -34563990 + B4A SINE B4 1 207 -85 1 1508 22 56 0 0 chr4 121066173 121066209 -34563911 + AT_rich Low_complexity Low_complexity 1 36 0 1 1508 360 246 14 186 chr4 121066214 121066434 -34563686 + B2_Mm2 SINE B2 5 186 -9 1 1508 324 64 0 0 chr4 121066542 121066589 -34563531 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1508 399 41 0 0 chr4 121066599 121066648 -34563472 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1508 1348 217 120 12 chr4 121067013 121067339 -34562781 + ORR1D2 LTR MaLR 3 363 -7 1 1508 391 287 17 77 chr4 121067380 121067497 -34562623 + PB1D10 SINE Alu 7 116 -1 1 1508 621 289 88 10 chr4 121067759 121067951 -34562169 - B3 SINE B2 -7 209 3 1 1508 4457 105 5 0 chr4 121068009 121068630 -34561490 - L1_Mus3 LINE L1 -358 6280 5657 1 1508 977 88 0 69 chr4 121068760 121068919 -34561201 + L1_Mus1 LINE L1 5880 6027 -540 1 1508 2203 171 44 29 chr4 121069781 121070234 -34559886 + RMER6B LTR ERVK 1 460 -1 1 1508 370 270 33 87 chr4 121070268 121070418 -34559702 + B4 SINE B4 26 167 -125 1 1508 518 219 97 0 chr4 121070343 121070457 -34559663 + B1_Mm SINE Alu 6 130 -17 1 1508 981 195 60 17 chr4 121070463 121070698 -34559422 + L1_Mur3 LINE L1 2477 2721 -3159 1 1508 573 149 0 0 chr4 121070695 121070789 -34559331 + L1_Mur3 LINE L1 2920 3013 -2867 1 1508 866 18 27 0 chr4 121070793 121070905 -34559215 + L1Md_F2 LINE L1 6466 6580 -2 1 1508 531 263 130 48 chr4 121071097 121071489 -34558631 + L1MB5 LINE L1 5742 6165 -9 1 1508 408 306 92 18 chr4 121071559 121071722 -34558398 + ID_B1 SINE B4 1 175 -49 1 1508 285 303 0 13 chr4 121071749 121071840 -34558280 + B1F1 SINE Alu 1 88 -29 1 1508 549 0 0 0 chr4 121072122 121072183 -34557937 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1508 189 0 0 0 chr4 121072185 121072206 -34557914 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1508 2663 178 89 26 chr4 121072505 121072648 -34557472 + RLTR22_Mus LTR ERVK 14 162 -1646 1 1508 489 34 0 0 chr4 121072648 121072707 -34557413 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1508 2663 178 89 26 chr4 121072707 121073179 -34556941 + RLTR22_Mus LTR ERVK 163 667 -1141 1 1508 9023 109 16 46 chr4 121073194 121074312 -34555808 - Lx3_Mus LINE L1 0 7009 5909 1 1508 1413 51 0 0 chr4 121074312 121074490 -34555630 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1508 9023 107 19 4 chr4 121074490 121075739 -34554381 - Lx3_Mus LINE L1 -1101 5908 4673 1 1508 567 43 0 0 chr4 121075739 121075809 -34554311 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 1508 14907 63 118 5 chr4 121075809 121078636 -34551484 - L1Md_F2 LINE L1 -19 6563 3360 1 1508 14535 111 12 6 chr4 121078638 121079071 -34551049 - Lx3_Mus LINE L1 -1206 4680 4253 1 1508 4299 164 34 31 chr4 121079071 121079878 -34550242 - RMER17D2 LTR ERVK 0 809 1 1 1508 14535 111 12 6 chr4 121079878 121081712 -34548408 - Lx3_Mus LINE L1 -1634 4252 2400 1 1508 474 96 0 0 chr4 121082415 121082488 -34547632 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 1 1508 532 254 42 14 chr4 121083072 121083216 -34546904 + B1_Mus1 SINE Alu 1 148 0 1 1508 770 279 20 72 chr4 121083669 121084083 -34546037 - RLTR11B LTR ERVK -34 407 1 1 1508 237 290 32 0 chr4 121084276 121084338 -34545782 + ID4_ SINE ID 16 79 -4 1 1508 219 69 0 0 chr4 121084913 121084942 -34545178 + (CTG)n Simple_repeat Simple_repeat 2 30 0 1 1508 360 0 0 0 chr4 121085061 121085101 -34545019 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1508 492 308 8 0 chr4 121085486 121085606 -34544514 - B1_Mus1 SINE Alu -15 133 13 1 1508 325 312 65 0 chr4 121085699 121085837 -34544283 - B1F SINE Alu 0 149 3 1 1508 458 279 18 0 chr4 121085729 121085840 -34544280 - ID_B1 SINE B4 -31 193 81 1 1508 338 342 53 40 chr4 121085932 121086084 -34544036 - RSINE1 SINE B4 -6 159 6 1 1508 261 312 185 4 chr4 121086393 121086631 -34543489 + L2 LINE L2 2485 2765 -654 1 1508 477 390 0 6 chr4 121086671 121086831 -34543289 + RSINE1 SINE B4 3 161 -4 1 1508 459 248 27 24 chr4 121086861 121087005 -34543115 + B3A SINE B2 35 174 -24 1 1508 2388 198 27 19 chr4 121087286 121087797 -34542323 - RMER2 LTR ERV1 -4 563 19 1 1508 362 297 15 92 chr4 121087955 121088085 -34542035 + B3 SINE B2 1 120 -96 1 1508 624 307 23 65 chr4 121088413 121088629 -34541491 + B4A SINE B4 1 207 -85 1 1508 556 333 19 29 chr4 121088719 121088929 -34541191 + B3A SINE B2 11 216 0 1 1508 504 0 0 0 chr4 121089032 121089088 -34541032 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1508 1205 233 127 12 chr4 121089479 121089809 -34540311 + ORR1D2 LTR MaLR 3 370 0 1 1508 428 294 18 35 chr4 121089843 121089956 -34540164 + PB1D10 SINE Alu 7 117 0 1 1508 577 302 31 0 chr4 121090222 121090381 -34539739 - B3 SINE B2 -7 209 46 1 1508 259 260 144 0 chr4 121090407 121090511 -34539609 - RCHARR1 DNA MER1_type -469 505 387 1 1508 5970 129 30 10 chr4 121090533 121091289 -34538831 - L1_Mus3 LINE L1 -1 6637 5875 1 1508 333 0 0 0 chr4 121091289 121091326 -34538794 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1508 5970 129 30 10 chr4 121091326 121091530 -34538590 - L1_Mus3 LINE L1 -764 5874 5658 1 1508 4990 111 6 6 chr4 121091661 121092349 -34537771 + L1_Mus1 LINE L1 5880 6567 0 1 1508 230 328 69 26 chr4 121092374 121092490 -34537630 + L2a LINE L2 1981 2101 -1318 1 1508 221 321 173 0 chr4 121092589 121092670 -34537450 - B1F SINE Alu -54 95 1 1 1508 278 304 160 30 chr4 121092673 121092873 -34537247 + L2a LINE L2 2091 2316 -1103 1 1508 521 279 35 14 chr4 121093198 121093340 -34536780 + B1F1 SINE Alu 3 147 -2 1 1508 360 342 27 9 chr4 121093582 121093694 -34536426 + RSINE1 SINE B4 20 133 -32 1 1508 288 0 0 0 chr4 121093716 121093748 -34536372 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1508 333 0 0 0 chr4 121093748 121093784 -34536336 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1508 487 269 18 18 chr4 121094506 121094616 -34535504 - B1_Mur1 SINE Alu -14 135 26 1 1508 194 271 196 0 chr4 121094836 121094943 -34535177 + L2a LINE L2 3033 3160 -266 1 1508 3791 216 60 91 chr4 121096179 121097315 -34532805 + RLTR25A LTR ERVK 1 1101 -2 1 1508 269 284 100 73 chr4 121097453 121097563 -34532557 - B1_Mur1 SINE Alu -36 113 1 2 1508 400 337 21 13 chr4 121098653 121098854 -34531266 + RLTR26 LTR ERVK 186 417 -210 2 1508 3441 188 30 28 chr4 121098931 121099565 -34530555 - RLTR26 LTR ERVK -2 640 6 2 1508 780 172 0 8 chr4 121099571 121099700 -34530420 - MERVK26-int LTR ERVK 0 6919 6792 2 1508 35982 73 5 12 chr4 121099700 121105877 -34524243 - L1Md_F2 LINE L1 0 6582 453 2 1508 18385 106 24 3 chr4 121105878 121107429 -34522691 - MERVK26-int LTR ERVK -114 6805 5219 2 1508 1170 105 0 0 chr4 121107429 121107601 -34522519 + (TCC)n Simple_repeat Simple_repeat 2 173 0 2 1508 18385 106 24 3 chr4 121107601 121108682 -34521438 - MERVK26-int LTR ERVK -1701 5218 4120 2 1508 962 236 5 3 chr4 121108811 121109036 -34521084 + RMER1B Other Other 52 386 -680 2 1508 1763 280 105 35 chr4 121109048 121110218 -34519902 + RMER1B Other Other 1 1066 0 2 1508 264 30 0 0 chr4 121110320 121110353 -34519767 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1508 584 203 190 25 chr4 121110404 121110525 -34519595 + B1_Mur4 SINE Alu 5 145 -5 2 1509 243 61 0 0 chr4 121110536 121110569 -34519551 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 2 1509 235 330 43 52 chr4 121110569 121110684 -34519436 + B3A SINE B2 29 142 -56 2 1509 585 286 56 10 chr4 121110702 121110900 -34519220 - B3 SINE B2 -7 209 3 2 1509 554 277 7 21 chr4 121110929 121111073 -34519047 + B1_Mur1 SINE Alu 7 148 -1 2 1509 299 274 27 0 chr4 121111113 121111186 -34518934 + B3 SINE B2 59 133 -83 2 1509 495 0 0 0 chr4 121111187 121111242 -34518878 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 2 1509 333 206 14 0 chr4 121111242 121111315 -34518805 + L1MB5 LINE L1 5794 5867 -307 2 1509 908 144 68 0 chr4 121111338 121111484 -34518636 + B2_Mm2 SINE B2 2 157 -38 2 1509 471 78 0 0 chr4 121111484 121111548 -34518572 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1509 596 348 21 0 chr4 121111898 121112085 -34518035 + ID_B1 SINE B4 3 193 -31 2 1509 6287 142 13 31 chr4 121112404 121113526 -34516594 + Lx3C LINE L1 5873 6974 -2 2 1509 616 270 7 0 chr4 121114496 121114644 -34515476 - MERVK26-int LTR ERVK -6638 281 133 2 1509 3961 125 19 103 chr4 121114659 121115471 -34514649 - RMER17A LTR ERVK 0 751 9 2 1509 6272 87 35 22 chr4 121115496 121116504 -34513616 - RMER17A-int LTR ERVK -3 1725 705 2 1509 220 300 0 0 chr4 121116557 121116607 -34513513 - B2_Mm1t SINE B2 -139 54 5 2 1509 434 340 13 64 chr4 121116656 121116813 -34513307 - B1_Mur2 SINE Alu 0 149 1 2 1509 867 24 40 8 chr4 121116869 121116993 -34513127 + (TCCCC)n Simple_repeat Simple_repeat 1 128 0 2 1509 328 395 0 79 chr4 121117234 121117399 -34512721 + RSINE1 SINE B4 14 165 0 2 1509 352 298 82 8 chr4 121117433 121117555 -34512565 + B3A SINE B2 13 143 -55 2 1509 2624 50 0 0 chr4 121117569 121117892 -34512228 + IAPEY2_LTR LTR ERVK 32 354 -3 2 1509 192 77 0 0 chr4 121117922 121117948 -34512172 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 2 1509 7686 52 3 28 chr4 121118007 121119595 -34510525 - L1Md_F2 LINE L1 -1 6581 5056 2 1509 254 86 0 0 chr4 121119592 121119627 -34510493 + L1_Mm LINE L1 2193 2227 -3656 2 1509 268 325 19 43 chr4 121119847 121119962 -34510158 + PB1D7 SINE Alu 5 120 0 2 1509 23 0 0 0 chr4 121120064 121120087 -34510033 + AT_rich Low_complexity Low_complexity 1 23 0 2 1509 473 263 10 0 chr4 121120114 121120213 -34509907 + B4A SINE B4 108 207 -85 2 1509 215 61 0 29 chr4 121120220 121120254 -34509866 + (CAT)n Simple_repeat Simple_repeat 2 34 0 2 1509 661 219 14 7 chr4 121120314 121120452 -34509668 + B1_Mur3 SINE Alu 9 147 -2 2 1509 405 330 43 32 chr4 121120496 121120684 -34509436 + B3A SINE B2 6 195 -3 2 1509 693 98 0 0 chr4 121120768 121120880 -34509240 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1509 184 250 32 32 chr4 121121040 121121102 -34509018 - MIRb SINE MIR -165 103 42 2 1509 700 265 21 11 chr4 121121246 121121433 -34508687 + ORR1D2 LTR MaLR 1 189 -181 2 1509 6814 61 32 14 chr4 121121473 121122432 -34507688 - L1Md_F2 LINE L1 -19 6563 5587 2 1509 468 259 43 14 chr4 121122442 121122583 -34507537 + ORR1D2 LTR MaLR 226 370 0 2 1509 218 350 25 12 chr4 121122616 121122697 -34507423 + ID_B1 SINE B4 86 167 -57 2 1509 548 311 85 20 chr4 121122984 121123184 -34506936 - B3 SINE B2 0 216 4 2 1509 1251 286 78 21 chr4 121123184 121123647 -34506473 - RCHARR1 DNA MER1_type -481 493 3 2 1509 195 170 0 0 chr4 121123780 121123827 -34506293 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1509 402 322 77 33 chr4 121123855 121124038 -34506082 + B3A SINE B2 6 196 -2 2 1509 582 308 26 36 chr4 121124065 121124192 -34505928 - B3 SINE B2 -26 190 63 2 1509 1066 224 155 29 chr4 121124192 121124541 -34505579 + ORR1B1 LTR MaLR 1 393 -1 2 1509 582 308 26 36 chr4 121124541 121124605 -34505515 - B3 SINE B2 -154 62 1 2 1509 388 310 76 23 chr4 121124669 121124801 -34505319 + B1_Mur1 SINE Alu 10 148 -1 2 1509 604 239 141 21 chr4 121124803 121124995 -34505125 + B3 SINE B2 2 216 0 2 1509 26 30 0 0 chr4 121125003 121125036 -34505084 + AT_rich Low_complexity Low_complexity 1 33 0 2 1509 520 251 119 27 chr4 121125231 121125634 -34504486 + L1MB5 LINE L1 5724 6165 -9 2 1509 425 345 69 6 chr4 121125710 121125885 -34504235 + ID_B1 SINE B4 1 186 -38 2 1509 288 154 0 0 chr4 121126267 121126319 -34503801 + CT-rich Low_complexity Low_complexity 1 52 0 2 1509 2919 196 40 29 chr4 121126627 121126786 -34503334 + RLTR22_Mur LTR ERVK 1 167 -1681 2 1509 220 91 45 0 chr4 121126786 121126830 -34503290 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1509 2919 196 40 29 chr4 121126830 121127327 -34502793 + RLTR22_Mur LTR ERVK 168 663 -1185 2 1509 6394 133 37 8 chr4 121127331 121127412 -34502708 - Lx3_Mus LINE L1 0 7009 6929 2 1509 198 0 0 0 chr4 121127412 121127434 -34502686 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 2 1509 6394 133 37 8 chr4 121127434 121128422 -34501698 - Lx3_Mus LINE L1 -81 6928 5910 2 1509 813 161 0 0 chr4 121128423 121128562 -34501558 + CT-rich Low_complexity Low_complexity 42 180 0 2 1509 1265 83 0 6 chr4 121128562 121128743 -34501377 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1509 813 161 0 0 chr4 121128743 121128783 -34501337 + polypyrimidine Low_complexity Low_complexity 2 41 0 2 1509 616 171 62 0 chr4 121128807 121128953 -34501167 - Lx3_Mus LINE L1 -118 6891 6737 2 1509 747 62 0 0 chr4 121128961 121129058 -34501062 + (TCCC)n Simple_repeat Simple_repeat 2 98 0 2 1509 699 75 0 0 chr4 121129058 121129151 -34500969 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 2 1509 18995 113 16 19 chr4 121129191 121130840 -34499280 - Lx3_Mus LINE L1 0 5886 4253 2 1509 4139 139 13 112 chr4 121130840 121131737 -34498383 - RMER17D2 LTR ERVK 0 809 1 2 1509 18995 113 16 19 chr4 121131737 121133336 -34496784 - Lx3_Mus LINE L1 -1634 4252 2647 2 1509 34510 61 13 6 chr4 121133331 121134175 -34495945 - L1Md_F2 LINE L1 0 6582 5727 2 1509 5619 65 0 0 chr4 121134175 121134897 -34495223 + L1Md_F2 LINE L1 5861 6582 0 2 1509 34510 54 6 33 chr4 121134897 121140960 -34489160 - L1Md_F2 LINE L1 -157 5726 3 2 1509 3511 127 10 8 chr4 121140963 121141576 -34488544 - L1_Mur1 LINE L1 -2962 2924 2311 2 1509 6772 97 2 5 chr4 121141560 121142548 -34487572 - L1Md_F2 LINE L1 -10 6572 5588 2 1509 7854 43 2 4 chr4 121142581 121143727 -34486393 - L1Md_F2 LINE L1 0 6582 5440 2 1509 24064 110 5 12 chr4 121143725 121148240 -34481880 - L1Md_F2 LINE L1 -970 4913 218 2 1509 2801 74 9 0 chr4 121148241 121148660 -34481460 - L1_Mm LINE L1 -3961 1922 1500 2 1509 260 348 0 63 chr4 121148754 121148786 -34481334 + B1_Mm SINE Alu 3 34 -113 2 1509 3024 148 80 6 chr4 121148786 121149025 -34481095 - RMER2 LTR ERV1 0 567 328 2 1509 502 0 59 0 chr4 121149025 121149093 -34481027 + (CATAA)n Simple_repeat Simple_repeat 3 74 0 2 1509 3024 148 80 6 chr4 121149093 121149381 -34480739 - RMER2 LTR ERV1 -240 327 1 2 1509 260 348 0 63 chr4 121149381 121149443 -34480677 + B1_Mm SINE Alu 35 91 -56 2 1509 349 325 7 80 chr4 121149531 121149668 -34480452 + B3 SINE B2 2 128 -88 2 1509 582 325 19 60 chr4 121150007 121150223 -34479897 + B4A SINE B4 1 207 -85 2 1509 595 291 23 46 chr4 121150308 121150524 -34479596 + B3A SINE B2 6 216 0 2 1509 824 117 7 0 chr4 121150826 121150980 -34479140 + (GA)n Simple_repeat Simple_repeat 1 155 0 2 1509 1226 214 124 12 chr4 121151380 121151711 -34478409 + ORR1D2 LTR MaLR 3 370 0 2 1509 396 272 58 5 chr4 121151743 121151851 -34478269 + B1F1 SINE Alu 5 115 -5 2 1509 532 280 94 11 chr4 121152124 121152315 -34477805 - B3 SINE B2 -7 209 3 2 1509 230 273 39 0 chr4 121152319 121152396 -34477724 - RCHARR1 DNA MER1_type -479 495 416 2 1509 5117 123 51 70 chr4 121152410 121153261 -34476859 - L1_Mus3 LINE L1 -2 6636 5768 2 1509 351 0 0 0 chr4 121153261 121153300 -34476820 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1509 5117 129 48 69 chr4 121153300 121153458 -34476662 - L1_Mus3 LINE L1 -569 5775 5657 2 1509 559 282 53 7 chr4 121153949 121154099 -34476021 - B3A SINE B2 -41 157 1 2 1509 655 215 33 0 chr4 121154720 121154841 -34475279 + B3 SINE B2 59 183 -33 2 1509 545 249 7 3 chr4 121155331 121155458 -34474662 + B1_Mus2 SINE Alu 1 130 -19 2 1509 286 314 33 87 chr4 121155458 121155475 -34474645 + MT2B LTR ERVL 187 298 -303 2 1509 2722 70 0 3 chr4 121155475 121155848 -34474272 + L1_Mus3 LINE L1 5622 5993 -645 2 1509 227 310 54 66 chr4 121156346 121156512 -34473608 + MURVY-LTR LTR ERV1 309 472 -47 2 1509 343 98 0 0 chr4 121156530 121156581 -34473539 + L1_Mus3 LINE L1 5988 6038 -600 2 1509 1001 129 0 0 chr4 121157802 121157941 -34472179 + B1_Mus1 SINE Alu 1 139 -9 2 1509 195 83 0 104 chr4 121157966 121158033 -34472087 + A-rich Low_complexity Low_complexity 1 60 0 2 1509 1903 264 34 53 chr4 121158097 121158941 -34471179 + L1_Rod LINE L1 3798 4625 -1222 2 1509 7035 93 13 6 chr4 121159038 121160876 -34469244 - L1VL2 LINE L1 -1586 2029 177 2 1509 3052 181 7 18 chr4 121161081 121161385 -34468735 - L1_Mm LINE L1 -41 5842 5548 2 1509 4642 130 110 17 chr4 121161385 121161810 -34468310 - RMER17D LTR ERVK -2 887 421 2 1509 853 98 14 0 chr4 121161810 121161953 -34468167 + (GA)n Simple_repeat Simple_repeat 1 145 0 2 1509 4642 130 110 17 chr4 121161953 121162339 -34467781 - RMER17D LTR ERVK -469 420 2 2 1509 3052 181 7 18 chr4 121162339 121162641 -34467479 - L1_Mm LINE L1 -336 5547 5243 2 1509 21819 29 0 1 chr4 121162645 121166044 -34464076 - L1Md_T LINE L1 0 6582 3186 2 1509 6848 55 0 0 chr4 121166070 121166962 -34463158 - L1_Mm LINE L1 0 5883 4992 2 1509 472 153 10 0 chr4 121166962 121167060 -34463060 - L1Md_F2 LINE L1 -1 6581 6483 3 1509 20942 52 17 15 chr4 121167063 121170245 -34459875 + L1Md_A LINE L1 362 3733 -2150 3 1509 762 166 52 29 chr4 121170174 121170348 -34459772 - L1_Mur2 LINE L1 -508 5369 5192 3 1509 7482 158 40 20 chr4 121170344 121171652 -34458468 + Lx4A LINE L1 5725 7058 0 3 1509 234 0 0 0 chr4 121171676 121171702 -34458418 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1509 349 352 32 16 chr4 121171704 121171828 -34458292 + B4A SINE B4 80 205 -87 3 1509 870 38 0 0 chr4 121171838 121171944 -34458176 + (TCC)n Simple_repeat Simple_repeat 3 108 0 3 1509 638 274 29 97 chr4 121172017 121172223 -34457897 + B3A SINE B2 3 194 -4 3 1509 766 232 0 0 chr4 121172241 121172383 -34457737 + B1_Mur4 SINE Alu 9 150 0 3 1509 5033 88 7 83 chr4 121172497 121173306 -34456814 + RMER17A LTR ERVK 1 748 -3 3 1509 1175 232 125 27 chr4 121173704 121174041 -34456079 + ORR1D2 LTR MaLR 1 370 0 3 1509 320 247 52 73 chr4 121174077 121174173 -34455947 + PB1D10 SINE Alu 8 101 -16 3 1509 203 0 0 36 chr4 121174429 121174457 -34455663 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1509 22 35 0 0 chr4 121174461 121174490 -34455630 + AT_rich Low_complexity Low_complexity 1 29 0 3 1509 3507 117 43 8 chr4 121175056 121175660 -34454460 - L1M3 LINE L1 -2833 3307 2694 3 1509 232 208 0 86 chr4 121175672 121175730 -34454390 + ID_B1 SINE B4 165 217 -7 3 1509 518 276 230 0 chr4 121175842 121176016 -34454104 + B3 SINE B2 3 216 0 3 1509 419 282 25 25 chr4 121176085 121176205 -34453915 + RSINE1 SINE B4 12 131 -34 3 1509 242 138 17 0 chr4 121176361 121176419 -34453701 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1509 2634 207 128 2 chr4 121176431 121177241 -34452879 + Lx3_Mus LINE L1 5465 6374 -635 3 1509 252 328 34 0 chr4 121177335 121177454 -34452666 + L1MB7 LINE L1 6028 6150 -34 3 1509 466 344 25 0 chr4 121177515 121177593 -34452527 + ID SINE ID 1 82 -142 3 1509 255 362 21 0 chr4 121177593 121177687 -34452433 + PB1D10 SINE Alu 1 96 -21 3 1509 251 284 56 8 chr4 121177703 121177806 -34452314 + B1F1 SINE Alu 7 116 -1 3 1509 4840 83 8 0 chr4 121177930 121178945 -34451175 - L1_Mus2 LINE L1 -378 6188 5162 3 1509 8493 171 9 118 chr4 121178937 121180703 -34449417 - L1_Mus2 LINE L1 -1562 4321 2805 3 1509 1050 53 0 0 chr4 121180703 121180836 -34449284 + (TTTCC)n Simple_repeat Simple_repeat 3 135 0 3 1509 8493 171 9 118 chr4 121180836 121181341 -34448779 - L1_Mus2 LINE L1 -3079 2804 2298 3 1509 214 217 0 21 chr4 121181687 121181734 -34448386 - B3A SINE B2 -145 53 8 3 1509 430 299 23 16 chr4 121181781 121181910 -34448210 - B1_Mus2 SINE Alu -15 132 3 3 1509 713 232 32 0 chr4 121182487 121182642 -34447478 + RMER1B Other Other 45 204 -862 3 1509 1842 276 65 42 chr4 121182730 121183827 -34446293 + RMER1B Other Other 1 1065 -1 3 1509 24 32 0 0 chr4 121184036 121184067 -34446053 + AT_rich Low_complexity Low_complexity 1 31 0 3 1509 296 162 0 0 chr4 121184323 121184382 -34445738 + B4 SINE B4 8 66 -226 3 1509 225 270 25 86 chr4 121184382 121184404 -34445716 + ID2 SINE ID 8 83 0 3 1509 1725 126 115 64 chr4 121184406 121184669 -34445451 - L1_Mur2 LINE L1 -296 5581 5297 3 1509 2485 113 3 0 chr4 121184669 121184995 -34445125 - ORR1A2 LTR MaLR 0 327 1 3 1509 1725 126 115 64 chr4 121184995 121185104 -34445016 - L1_Mur2 LINE L1 -581 5296 5190 3 1509 7407 159 39 12 chr4 121185098 121185129 -34444991 + Lx4A LINE L1 5725 5755 -1303 3 1509 2993 95 27 5 chr4 121185129 121185541 -34444579 + BGLII LTR ERVK 1 421 0 3 1509 7407 159 39 12 chr4 121185541 121186809 -34443311 + Lx4A LINE L1 5756 7058 0 3 1509 23 0 0 0 chr4 121186809 121186832 -34443288 + AT_rich Low_complexity Low_complexity 1 23 0 3 1509 230 127 37 25 chr4 121186845 121186926 -34443194 + A-rich Low_complexity Low_complexity 3 84 0 3 1509 180 0 0 0 chr4 121186934 121186954 -34443166 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 3 1509 323 359 39 0 chr4 121186979 121187082 -34443038 + B4A SINE B4 81 187 -105 3 1509 384 22 0 0 chr4 121187107 121187152 -34442968 + (CAT)n Simple_repeat Simple_repeat 3 47 0 3 1509 564 312 39 19 chr4 121187272 121187478 -34442642 + B3 SINE B2 3 212 -4 3 1509 807 196 0 0 chr4 121187500 121187638 -34442482 + B1_Mur4 SINE Alu 13 150 0 3 1509 26 30 0 0 chr4 121187656 121187689 -34442431 + AT_rich Low_complexity Low_complexity 1 33 0 3 1509 342 98 0 0 chr4 121188064 121188115 -34442005 + (A)n Simple_repeat Simple_repeat 1 51 0 3 1509 1026 240 152 19 chr4 121188171 121188494 -34441626 + ORR1D2 LTR MaLR 5 370 0 3 1509 256 299 26 86 chr4 121188529 121188646 -34441474 + PB1D10 SINE Alu 7 116 -1 3 1509 24 32 0 0 chr4 121188869 121188900 -34441220 + AT_rich Low_complexity Low_complexity 1 31 0 3 1509 356 343 64 0 chr4 121188992 121189115 -34441005 + ID_B1 SINE B4 65 196 -28 3 1509 511 301 45 24 chr4 121189115 121189304 -34440816 + B3 SINE B2 4 189 -6 3 1509 459 297 27 68 chr4 121189365 121189497 -34440623 + RSINE1 SINE B4 24 151 -14 3 1509 867 61 0 0 chr4 121189497 121189611 -34440509 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1509 459 297 27 68 chr4 121189611 121189626 -34440494 + RSINE1 SINE B4 152 165 0 3 1509 426 88 0 0 chr4 121189675 121189743 -34440377 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 3 1509 366 296 146 69 chr4 121189743 121189990 -34440130 + L2a LINE L2 2528 2793 -626 3 1509 412 334 181 3 chr4 121190697 121191018 -34439102 + L2a LINE L2 2950 3327 -99 3 1509 399 324 51 81 chr4 121191992 121192227 -34437893 + RLTR26 LTR ERVK 186 413 -229 3 1509 500 275 0 12 chr4 121192734 121192907 -34437213 + CT-rich Low_complexity Low_complexity 1 171 0 3 1509 491 223 11 0 chr4 121192938 121193032 -34437088 - B1_Mur1 SINE Alu -26 123 29 3 1509 266 327 100 27 chr4 121192941 121193051 -34437069 - ID_B1 SINE B4 -26 198 81 3 1509 538 242 32 24 chr4 121193779 121193902 -34436218 + B1_Mus1 SINE Alu 25 148 0 3 1509 255 31 0 0 chr4 121193927 121193959 -34436161 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 3 1509 504 229 17 0 chr4 121193971 121194089 -34436031 + ID_B1 SINE B4 86 205 -19 3 1509 21 57 0 0 chr4 121194348 121194383 -34435737 + AT_rich Low_complexity Low_complexity 1 35 0 3 1509 405 288 37 29 chr4 121194586 121194722 -34435398 - RSINE1 SINE B4 -21 144 8 3 1509 193 375 16 0 chr4 121194860 121194924 -34435196 - L3b LINE CR1 -31 451 387 3 1509 1561 258 92 56 chr4 121195275 121196328 -34433792 + RMER1A Other Other 1 779 -287 3 1509 7046 85 6 37 chr4 121196359 121197157 -34432963 - L1_Mus2 LINE L1 0 6566 5799 3 1509 1306 35 0 0 chr4 121197157 121197299 -34432821 - B1_Mus1 SINE Alu -5 143 2 3 1509 7046 105 6 35 chr4 121197299 121197602 -34432518 - L1_Mus2 LINE L1 -85 5798 5496 3 1509 2062 206 23 37 chr4 121197602 121198064 -34432056 + RMER17B LTR ERVK 1 442 -464 3 1509 37430 42 6 0 chr4 121198064 121198951 -34431169 - L1Md_F3 LINE L1 -124 6460 5569 3 1509 3953 60 6 0 chr4 121198951 121199420 -34430700 - L1Md_T LINE L1 0 6582 6111 3 1509 37430 55 0 1 chr4 121199420 121203821 -34426299 - L1Md_F3 LINE L1 -315 5568 1170 3 1509 4267 149 7 9 chr4 121203806 121204543 -34425577 - L1Md_F3 LINE L1 -5499 1225 491 3 1509 2943 192 82 16 chr4 121204577 121205208 -34424912 + RMER17B LTR ERVK 286 958 0 3 1509 12117 125 17 2 chr4 121205208 121205975 -34424145 - L1_Mm LINE L1 -382 5501 4736 3 1509 216 0 0 0 chr4 121205975 121205999 -34424121 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1509 12117 125 17 2 chr4 121205999 121207105 -34423015 - L1_Mm LINE L1 -1148 4735 3601 3 1509 1726 169 24 0 chr4 121207107 121207402 -34422718 + ORR1A2 LTR MaLR 26 327 0 3 1509 723 197 26 7 chr4 121207402 121207553 -34422567 - RMER4B LTR ERVK -345 240 87 3 1509 1764 94 20 0 chr4 121207553 121207798 -34422322 - L1_Mus1 LINE L1 -465 6102 5853 3 1509 1973 55 0 0 chr4 121207797 121208032 -34422088 + L1_Mus1 LINE L1 5627 5861 -706 3 1509 923 299 96 16 chr4 121208055 121208429 -34421691 - RCHARR1 DNA MER1_type -566 408 5 3 1509 567 43 0 0 chr4 121208538 121208608 -34421512 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1509 582 197 192 24 chr4 121208660 121208785 -34421335 + B1_Mur4 SINE Alu 5 150 0 3 1509 465 34 0 0 chr4 121208958 121209017 -34421103 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1509 510 273 42 7 chr4 121209040 121209184 -34420936 - B3A SINE B2 -48 150 2 3 1509 605 243 49 21 chr4 121209212 121209355 -34420765 + B1_Mur1 SINE Alu 2 148 -1 3 1509 351 283 186 0 chr4 121209358 121209471 -34420649 + B3 SINE B2 3 136 -80 3 1509 354 127 0 0 chr4 121209471 121209542 -34420578 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 3 1509 316 240 1 0 chr4 121209543 121209624 -34420496 + L1MB7 LINE L1 5791 5872 -2123 3 1509 1304 107 17 6 chr4 121209642 121209820 -34420300 + B2_Mm2 SINE B2 2 181 -14 3 1509 389 97 0 0 chr4 121209855 121209917 -34420203 + B2_Mm1a SINE B2 127 188 -5 3 1509 360 266 97 67 chr4 121209922 121210160 -34419960 + L1MB7 LINE L1 5891 6135 -49 3 1509 592 344 27 0 chr4 121210251 121210434 -34419686 + ID_B1 SINE B4 1 188 -36 3 1509 264 314 0 0 chr4 121210454 121210524 -34419596 + B4A SINE B4 85 154 -138 3 1509 2835 137 8 35 chr4 121210751 121211265 -34418855 + Lx3C LINE L1 5868 6367 -609 3 1509 2931 56 0 0 chr4 121211265 121211606 -34418514 + L1Md_F2 LINE L1 6240 6580 -2 3 1509 3402 171 32 17 chr4 121211607 121212201 -34417919 + Lx3C LINE L1 6372 6974 -2 3 1509 413 282 94 41 chr4 121213906 121214076 -34416044 - RMER20B LTR ERVK -215 412 234 3 1509 307 115 0 47 chr4 121214528 121214539 -34415581 + polypyrimidine Low_complexity Low_complexity 54 64 0 3 1509 795 80 16 8 chr4 121214539 121214665 -34415455 + (TTC)n Simple_repeat Simple_repeat 3 129 0 3 1509 307 115 0 47 chr4 121214665 121214717 -34415403 + polypyrimidine Low_complexity Low_complexity 4 53 0 3 1509 276 269 64 0 chr4 121214744 121214822 -34415298 - B1_Mur1 SINE Alu -41 108 26 3 1509 234 176 0 0 chr4 121215204 121215255 -34414865 + T-rich Low_complexity Low_complexity 1 51 0 3 1509 1200 97 0 0 chr4 121215256 121215401 -34414719 - B1_Mus2 SINE Alu 0 147 3 3 1509 266 307 8 116 chr4 121215727 121215856 -34414264 + MT2B LTR ERVL 144 258 -343 3 1509 660 237 8 0 chr4 121215763 121215894 -34414226 + B1_Mus2 SINE Alu 10 141 -6 3 1509 626 28 0 0 chr4 121216304 121216375 -34413745 + L1_Mm LINE L1 5439 5509 -374 4 1509 256 330 11 0 chr4 121216665 121216753 -34413367 + CT-rich Low_complexity Low_complexity 1 89 0 4 1509 239 109 0 52 chr4 121217247 121217305 -34412815 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1509 2955 79 42 3 chr4 121217312 121217692 -34412428 - L1Md_F2 LINE L1 -14 6568 6174 4 1509 1122 52 0 0 chr4 121217692 121217828 -34412292 - L1_Mm LINE L1 -875 5008 4873 4 1509 4546 116 30 0 chr4 121217828 121218473 -34411647 + L1_Mus1 LINE L1 5904 6567 0 4 1509 221 213 0 21 chr4 121218816 121218864 -34411256 - B3A SINE B2 -147 51 5 4 1509 329 370 13 52 chr4 121218901 121219055 -34411065 - B1_Mur2 SINE Alu -1 148 1 4 1509 342 304 17 17 chr4 121219147 121219264 -34410856 - ID_B1 SINE B4 -1 223 107 4 1509 230 323 59 20 chr4 121219179 121219280 -34410840 - B1F1 SINE Alu -35 114 10 4 1509 336 331 50 7 chr4 121219392 121219532 -34410588 - RSINE1 SINE B4 -8 157 12 4 1509 359 290 179 11 chr4 121219864 121220143 -34409977 + L2 LINE L2 2488 2813 -606 4 1509 325 406 0 14 chr4 121220167 121220307 -34409813 + RSINE1 SINE B4 22 159 -6 4 1509 487 305 14 28 chr4 121220340 121220485 -34409635 + B3A SINE B2 1 143 -55 4 1509 324 0 0 0 chr4 121220505 121220541 -34409579 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1509 768 22 0 0 chr4 121220597 121220687 -34409433 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1509 291 312 34 51 chr4 121220876 121220994 -34409126 + PB1D10 SINE Alu 2 117 0 4 1509 471 309 108 38 chr4 121221053 121221238 -34408882 + B3 SINE B2 1 198 0 4 1509 525 311 37 83 chr4 121221501 121221718 -34408402 + B4A SINE B4 1 207 -85 4 1509 432 0 0 0 chr4 121221724 121221772 -34408348 + (CAT)n Simple_repeat Simple_repeat 1 48 0 4 1509 542 250 7 41 chr4 121221835 121221966 -34408154 + B1_Mur3 SINE Alu 9 137 -12 4 1509 351 0 0 0 chr4 121221966 121222005 -34408115 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1509 542 250 7 41 chr4 121222005 121222019 -34408101 + B1_Mur3 SINE Alu 138 149 0 4 1509 2453 203 0 13 chr4 121222063 121222517 -34407603 + L1VL4 LINE L1 26 473 -5829 4 1509 758 87 315 17 chr4 121222493 121222686 -34407434 + L1_Mur1 LINE L1 1758 2013 -3873 4 1509 608 97 0 11 chr4 121222686 121222780 -34407340 + (GGGGA)n Simple_repeat Simple_repeat 4 96 0 4 1509 189 0 0 0 chr4 121222782 121222803 -34407317 + (GAAAA)n Simple_repeat Simple_repeat 1 21 0 4 1509 356 324 108 0 chr4 121222810 121222921 -34407199 + B3A SINE B2 5 127 -71 4 1509 23 33 0 0 chr4 121222967 121222997 -34407123 + AT_rich Low_complexity Low_complexity 1 30 0 4 1509 1124 226 96 20 chr4 121223455 121223799 -34406321 + ORR1D2 LTR MaLR 1 370 0 4 1509 258 326 32 0 chr4 121223829 121223924 -34406196 + PB1D10 SINE Alu 5 102 -15 4 1509 553 304 31 6 chr4 121224205 121224367 -34405753 - B3 SINE B2 -3 213 48 4 1509 25 31 0 0 chr4 121224385 121224417 -34405703 + AT_rich Low_complexity Low_complexity 1 32 0 4 1509 1363 154 8 4 chr4 121224421 121224655 -34405465 - L1_Mus3 LINE L1 -6 6632 6398 4 1509 1105 197 139 36 chr4 121224656 121224957 -34405163 - IAPEY3_LTR LTR ERVK 0 332 1 4 1509 1259 198 55 15 chr4 121224957 121225300 -34404820 - IAP-d-int LTR ERVK 0 6481 6125 4 1509 1576 132 50 24 chr4 121225312 121225655 -34404465 - IAPEY3-int LTR ERVK -337 7343 6965 4 1509 1268 127 127 0 chr4 121225655 121225876 -34404244 - IAP-d-int LTR ERVK -1287 5255 5007 4 1509 346 158 0 0 chr4 121225876 121225933 -34404187 - IAP-d-int LTR ERVK -6039 503 447 4 1509 278 139 0 0 chr4 121226111 121226154 -34403966 - RLTR19-int LTR ERVK -995 992 950 4 1509 495 218 303 5 chr4 121226149 121226370 -34403750 - RLTR19-int LTR ERVK -5475 662 376 4 1509 707 188 104 0 chr4 121226338 121226492 -34403628 - RMER16-int LTR ERVK -4903 503 334 4 1509 751 154 7 0 chr4 121226490 121226626 -34403494 - MMERVK10C-int LTR ERVK -6737 844 708 4 1509 1611 131 3 12 chr4 121226729 121227074 -34403046 - MMERVK10C-int LTR ERVK -7159 422 1 4 1509 915 189 178 44 chr4 121227074 121227367 -34402753 - IAPEY3_LTR LTR ERVK 0 332 1 4 1509 4676 92 1 3 chr4 121227369 121228056 -34402064 - L1_Mus2 LINE L1 -210 6356 5671 4 1509 33819 72 4 5 chr4 121228055 121233812 -34396308 + L1Md_F3 LINE L1 338 6088 -496 4 1509 2078 58 22 4 chr4 121233825 121234100 -34396020 + L1Md_F3 LINE L1 6302 6581 -3 4 1509 18917 134 22 2 chr4 121234115 121237423 -34392697 - L1_Mm LINE L1 -199 5684 2310 4 1509 612 286 52 5 chr4 121237552 121237745 -34392375 + MuRRS4-int LTR ERV1 3818 4019 -1044 4 1509 400 324 0 0 chr4 121237944 121238055 -34392065 + RLTR19-int LTR ERVK 4376 4486 -1651 4 1509 289 290 10 10 chr4 121238264 121238383 -34391737 + RLTR6-int LTR ERV1 7373 7469 -309 4 1509 495 0 0 0 chr4 121238387 121238442 -34391678 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1509 305 146 36 18 chr4 121238874 121238930 -34391190 + RLTR33 LTR ERVK 3 59 -619 4 1509 1323 252 53 2 chr4 121238926 121239310 -34390810 + RLTR33 LTR ERVK 232 678 0 4 1509 340 379 73 17 chr4 121239533 121239710 -34390410 + B3A SINE B2 3 189 -9 4 1509 661 297 9 5 chr4 121239718 121239931 -34390189 - B3 SINE B2 -2 214 1 4 1509 348 197 14 14 chr4 121239999 121240071 -34390049 + B1_Mur1 SINE Alu 75 146 -3 4 1509 578 240 128 111 chr4 121240076 121240268 -34389852 + B3 SINE B2 6 216 0 4 1509 932 303 86 18 chr4 121240418 121241033 -34389087 + L1MB5 LINE L1 5503 6159 -15 4 1509 365 385 53 6 chr4 121241127 121241297 -34388823 + ID_B1 SINE B4 1 178 -46 4 1509 291 274 89 49 chr4 121241324 121241447 -34388673 + PB1D10 SINE Alu 1 128 -21 4 1510 3322 46 2 0 chr4 121241830 121242225 -34387895 + MTA_Mm LTR MaLR 1 396 0 4 1510 231 209 23 0 chr4 121242392 121242435 -34387685 - B1F2 SINE Alu -74 75 32 4 1510 396 0 0 0 chr4 121242437 121242481 -34387639 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1510 512 295 74 33 chr4 121242750 121242966 -34387154 + RLTR11B LTR ERVK 48 260 -268 4 1510 542 292 15 0 chr4 121244213 121244343 -34385777 - B1_Mur2 SINE Alu -15 134 3 4 1510 465 264 45 9 chr4 121244469 121244580 -34385540 - ID_B1 SINE B4 -34 190 76 4 1510 312 331 71 35 chr4 121244685 121244826 -34385294 - RSINE1 SINE B4 -17 148 3 4 1510 591 271 174 7 chr4 121245130 121245412 -34384708 + L2 LINE L2 2485 2813 -606 4 1510 535 372 0 0 chr4 121245426 121245574 -34384546 + RSINE1 SINE B4 12 159 -6 4 1510 766 239 45 11 chr4 121245607 121245785 -34384335 + B3A SINE B2 1 184 -14 4 1510 340 300 18 26 chr4 121246025 121246138 -34383982 + PB1D9 SINE Alu 9 120 0 4 1510 2698 167 17 35 chr4 121246149 121247368 -34382752 + L1VL4 LINE L1 320 1398 -2419 4 1510 492 32 0 0 chr4 121247373 121247435 -34382685 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1510 270 0 0 0 chr4 121247438 121247468 -34382652 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4 1510 1035 262 87 14 chr4 121247790 121248135 -34381985 + ORR1D2 LTR MaLR 1 370 0 4 1510 455 229 28 19 chr4 121248167 121248274 -34381846 + PB1D10 SINE Alu 5 112 -5 4 1510 489 307 97 0 chr4 121248559 121248735 -34381385 - B3 SINE B2 -19 197 5 4 1510 1332 261 120 5 chr4 121248741 121249183 -34380937 - RCHARR1 DNA MER1_type -479 495 3 4 1510 354 80 0 0 chr4 121249312 121249362 -34380758 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1510 297 109 0 0 chr4 121249364 121249410 -34380710 + (TAGG)n Simple_repeat Simple_repeat 3 48 0 4 1510 503 322 49 38 chr4 121249410 121249521 -34380599 + B3A SINE B2 5 119 -79 4 1510 1967 125 44 13 chr4 121249521 121249838 -34380282 + ORR1A2 LTR MaLR 1 327 0 4 1510 503 322 49 38 chr4 121249838 121249910 -34380210 + B3A SINE B2 120 190 -8 4 1510 744 291 5 5 chr4 121249921 121250135 -34379985 - B3 SINE B2 -2 214 1 4 1510 555 290 14 21 chr4 121250162 121250291 -34379829 + B1_Mur1 SINE Alu 7 136 -13 4 1510 342 0 0 0 chr4 121250291 121250329 -34379791 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 4 1510 555 290 14 21 chr4 121250329 121250340 -34379780 + B1_Mur1 SINE Alu 137 146 -3 4 1510 714 229 28 0 chr4 121250367 121250511 -34379609 + B3 SINE B2 65 212 -4 4 1510 845 264 42 36 chr4 121250638 121250995 -34379125 + L1MB7 LINE L1 5504 5862 -322 4 1510 726 282 23 0 chr4 121251266 121251440 -34378680 + ID_B1 SINE B4 1 178 -46 4 1510 264 348 33 0 chr4 121251359 121251451 -34378669 + B1_Mur2 SINE Alu 17 111 -38 4 1510 191 278 162 34 chr4 121252082 121252261 -34377859 + L2a LINE L2 1900 2101 -1318 4 1510 265 307 162 18 chr4 121252457 121252679 -34377441 + L2a LINE L2 2091 2344 -1075 4 1510 280 288 124 36 chr4 121252754 121252891 -34377229 + PB1D10 SINE Alu 1 149 0 4 1510 240 233 88 88 chr4 121252885 121252965 -34377155 + ID_B1 SINE B4 78 157 -67 4 1510 587 279 35 14 chr4 121252976 121253118 -34377002 + B1F SINE Alu 3 147 -2 4 1510 295 213 0 16 chr4 121253150 121253212 -34376908 + ID_B1 SINE B4 157 217 -7 4 1510 516 282 0 0 chr4 121253358 121253468 -34376652 + RSINE1 SINE B4 20 129 -36 4 1510 315 0 0 0 chr4 121253492 121253527 -34376593 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1510 207 313 204 47 chr4 121253533 121253808 -34376312 + L2a LINE L2 2478 2795 -624 4 1510 619 189 0 18 chr4 121254290 121254403 -34375717 - B1F2 SINE Alu -14 135 25 4 1510 322 350 184 21 chr4 121254561 121254888 -34375232 + L2a LINE L2 2952 3331 -95 4 1510 4092 151 20 27 chr4 121255890 121256591 -34373529 + RLTR25A LTR ERVK 1 696 -407 4 1510 24 0 0 0 chr4 121256642 121256666 -34373454 + AT_rich Low_complexity Low_complexity 1 24 0 4 1510 5250 89 14 66 chr4 121256746 121257584 -34372536 - RLTR13B4 LTR ERVK 0 803 9 4 1510 423 0 0 0 chr4 121258060 121258107 -34372013 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1510 871 183 27 41 chr4 121258152 121258463 -34371657 + RLTR25A LTR ERVK 715 1026 -2 4 1510 229 237 34 0 chr4 121258554 121258613 -34371507 + CT-rich Low_complexity Low_complexity 2 62 0 4 1510 371 233 105 75 chr4 121258613 121258736 -34371384 - B1_Mur1 SINE Alu -21 128 1 4 1510 26773 72 25 23 chr4 121258742 121259848 -34370272 - L1_Mus2 LINE L1 0 6566 5466 4 1510 3821 151 130 10 chr4 121259848 121260183 -34369937 + RMER17D2 LTR ERVK 1 379 -430 4 1510 905 57 0 8 chr4 121260183 121260308 -34369812 + (TCTCC)n Simple_repeat Simple_repeat 2 125 0 4 1510 3821 151 130 10 chr4 121260308 121260694 -34369426 + RMER17D2 LTR ERVK 380 808 -1 4 1510 26773 139 21 8 chr4 121260694 121265694 -34364426 - L1_Mus2 LINE L1 -418 5465 381 4 1510 361 387 63 11 chr4 121266372 121266547 -34363573 + B3A SINE B2 6 189 -9 4 1510 22 35 0 0 chr4 121266559 121266588 -34363532 + AT_rich Low_complexity Low_complexity 1 29 0 4 1510 186 103 0 0 chr4 121266594 121266623 -34363497 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 1510 475 279 77 11 chr4 121266632 121266813 -34363307 - B3A SINE B2 -5 193 1 5 1510 638 238 0 0 chr4 121266843 121266969 -34363151 + B1_Mur1 SINE Alu 10 135 -14 5 1510 213 304 0 0 chr4 121266971 121267017 -34363103 + B2_Mm2 SINE B2 2 47 -148 5 1510 307 301 46 46 chr4 121267187 121267295 -34362825 + ID_B1 SINE B4 85 192 -32 5 1510 327 319 137 19 chr4 121267376 121267632 -34362488 + L2a LINE L2 3034 3319 -107 5 1510 561 96 0 0 chr4 121268720 121268814 -34361306 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 1510 421 258 11 0 chr4 121268825 121268914 -34361206 - B1_Mur1 SINE Alu -31 118 29 5 1510 24571 91 3 4 chr4 121269205 121273571 -34356549 - L1Md_F2 LINE L1 0 6582 2219 5 1510 1047 199 78 117 chr4 121273571 121273980 -34356140 - RLTR9C LTR ERVK 0 393 1 5 1510 366 149 14 0 chr4 121273980 121274054 -34356066 - MMETn-int LTR ERVK -1 7405 7331 5 1510 3731 184 37 51 chr4 121274270 121275628 -34354492 - MMETn-int LTR ERVK -1998 3408 2356 5 1510 6792 114 64 5 chr4 121275628 121277268 -34352852 - L1Md_A LINE L1 -3659 2224 467 5 1510 369 119 0 0 chr4 121277274 121277333 -34352787 - L1_Mur1 LINE L1 -1581 4305 4247 5 1510 4251 154 33 13 chr4 121277333 121277470 -34352650 - RMER17D2 LTR ERVK 0 809 675 5 1510 2943 67 0 0 chr4 121277470 121277816 -34352304 - ORR1A1 LTR MaLR 0 346 1 5 1510 4288 154 33 13 chr4 121277816 121278471 -34351649 - RMER17D2 LTR ERVK -135 674 1 5 1510 11540 102 18 36 chr4 121278471 121279627 -34350493 - L1_Mur1 LINE L1 -1634 4252 3150 5 1510 705 24 0 0 chr4 121279627 121279710 -34350410 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 5 1510 11540 102 18 36 chr4 121279710 121280408 -34349712 - L1_Mur1 LINE L1 -2737 3149 2431 5 1510 806 91 0 46 chr4 121281103 121281276 -34348844 + (TCTCTG)n Simple_repeat Simple_repeat 2 166 0 5 1510 303 330 82 33 chr4 121281277 121281399 -34348721 - B1_Mur3 SINE Alu -21 128 1 5 1510 634 243 28 0 chr4 121281879 121282023 -34348097 + B1_Mus1 SINE Alu 1 148 0 5 1510 880 281 25 64 chr4 121282547 121282979 -34347141 - RLTR11B LTR ERVK -17 424 1 5 1510 235 312 0 0 chr4 121283455 121283519 -34346601 + GA-rich Low_complexity Low_complexity 3 66 0 5 1510 455 315 0 0 chr4 121284267 121284378 -34345742 - B1_Mus1 SINE Alu -27 121 11 5 1510 386 312 58 0 chr4 121284478 121284616 -34345504 - B1F2 SINE Alu -1 148 3 5 1510 510 274 8 0 chr4 121284502 121284619 -34345501 - ID_B1 SINE B4 -26 198 81 5 1510 295 296 70 23 chr4 121284732 121284860 -34345260 - RSINE1 SINE B4 -29 136 3 5 1510 349 292 190 4 chr4 121285164 121285401 -34344719 + L2 LINE L2 2485 2765 -654 5 1510 453 378 7 7 chr4 121285441 121285590 -34344530 + RSINE1 SINE B4 3 151 -14 5 1510 488 246 38 18 chr4 121285620 121285780 -34344340 + B3A SINE B2 35 200 -16 5 1510 3391 155 64 0 chr4 121286046 121286575 -34343545 - RMER2 LTR ERV1 -4 563 1 5 1510 431 277 14 84 chr4 121286724 121286866 -34343254 + B3 SINE B2 1 132 -84 5 1510 544 317 23 65 chr4 121287190 121287406 -34342714 + B4A SINE B4 1 207 -85 5 1510 530 324 32 27 chr4 121287489 121287693 -34342427 + B3A SINE B2 5 208 -8 5 1510 912 103 0 0 chr4 121287834 121287990 -34342130 + (GA)n Simple_repeat Simple_repeat 2 157 0 5 1510 363 44 0 0 chr4 121288001 121288046 -34342074 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1510 314 23 23 0 chr4 121288328 121288371 -34341749 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 1510 1188 233 127 15 chr4 121288448 121288779 -34341341 + ORR1D2 LTR MaLR 3 370 0 5 1510 503 248 18 35 chr4 121288813 121288926 -34341194 + PB1D10 SINE Alu 7 117 0 5 1510 590 300 88 10 chr4 121289191 121289383 -34340737 - B3 SINE B2 -7 209 3 5 1510 6402 127 6 2 chr4 121289505 121290482 -34339638 - L1_Mus3 LINE L1 -1 6637 5657 5 1510 4758 120 21 1 chr4 121290612 121291286 -34338834 + L1_Mus1 LINE L1 5880 6566 -1 5 1510 272 250 137 0 chr4 121291590 121291714 -34338406 + L2a LINE L2 2054 2194 -1225 5 1510 549 223 54 0 chr4 121292140 121292270 -34337850 + B1F1 SINE Alu 5 141 -8 5 1510 260 261 138 0 chr4 121292414 121292479 -34337641 + ID_B1 SINE B4 127 200 -24 5 1510 403 339 9 9 chr4 121292516 121292629 -34337491 + RSINE1 SINE B4 21 133 -32 5 1510 378 74 0 0 chr4 121292640 121292694 -34337426 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1510 456 19 0 0 chr4 121292694 121292746 -34337374 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1510 257 310 131 42 chr4 121292758 121293041 -34337079 + L2a LINE L2 2486 2793 -626 5 1510 519 206 29 19 chr4 121293561 121293665 -34336455 - B1F2 SINE Alu -20 129 25 5 1510 231 303 174 12 chr4 121293880 121294047 -34336073 + L2a LINE L2 3034 3227 -199 5 1510 4012 212 58 82 chr4 121295215 121295895 -34334225 + RLTR25A LTR ERVK 1 699 -404 5 1510 450 0 0 0 chr4 121295895 121295945 -34334175 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1510 4012 212 58 82 chr4 121295945 121296392 -34333728 + RLTR25A LTR ERVK 700 1101 -2 5 1510 232 294 100 73 chr4 121296526 121296636 -34333484 - B1_Mur1 SINE Alu -36 113 1 5 1510 294 324 130 34 chr4 121296727 121296989 -34333131 + L2a LINE L2 3058 3344 -82 5 1510 367 350 56 12 chr4 121297730 121297931 -34332189 + RMER20B LTR ERVK 186 417 -210 5 1510 3318 185 33 25 chr4 121298006 121298643 -34331477 - RLTR26 LTR ERVK 0 642 1 5 1510 11467 106 33 6 chr4 121298646 121301368 -34328752 - MERVK26-int LTR ERVK -1 6918 4123 5 1510 795 242 63 5 chr4 121301502 121301693 -34328427 + RMER1B Other Other 54 255 -811 5 1510 1878 271 90 52 chr4 121301725 121302787 -34327333 + RMER1B Other Other 16 1062 -4 5 1510 278 273 202 60 chr4 121302828 121303011 -34327109 + B3 SINE B2 1 209 -7 5 1510 659 280 20 49 chr4 121303284 121303487 -34326633 + B4A SINE B4 1 197 -95 5 1510 210 206 0 0 chr4 121303504 121303572 -34326548 + (CAT)n Simple_repeat Simple_repeat 2 69 0 5 1510 365 374 23 0 chr4 121303627 121303801 -34326319 + B3A SINE B2 4 181 -17 5 1510 590 235 0 42 chr4 121303848 121303990 -34326130 + B1_Mus1 SINE Alu 13 148 0 5 1510 300 27 0 0 chr4 121304110 121304147 -34325973 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1510 570 29 0 0 chr4 121304147 121304214 -34325906 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1510 617 292 73 20 chr4 121304561 121304885 -34325235 + ORR1D2 LTR MaLR 1 359 0 5 1510 390 277 21 0 chr4 121304920 121305014 -34325106 + PB1D10 SINE Alu 5 100 -17 5 1510 30 45 0 0 chr4 121305259 121305303 -34324817 + AT_rich Low_complexity Low_complexity 1 44 0 5 1510 1815 193 83 16 chr4 121305314 121305589 -34324531 - RMER4B LTR ERVK 0 585 241 5 1510 2301 132 3 0 chr4 121305589 121305915 -34324205 + ORR1A2 LTR MaLR 1 327 0 5 1510 1815 191 88 25 chr4 121305915 121306137 -34323983 - RMER4B LTR ERVK -345 240 20 5 1510 606 285 93 0 chr4 121306150 121306322 -34323798 - B3 SINE B2 -18 198 11 5 1510 896 300 86 13 chr4 121306381 121306753 -34323367 - RCHARR1 DNA MER1_type -573 401 3 5 1510 414 0 0 0 chr4 121306860 121306906 -34323214 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1510 503 180 192 24 chr4 121306957 121307082 -34323038 + B1_Mur4 SINE Alu 5 150 0 5 1510 366 61 0 0 chr4 121307087 121307136 -34322984 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 5 1510 717 282 30 0 chr4 121307269 121307471 -34322649 - B3 SINE B2 -7 209 2 5 1510 498 244 90 15 chr4 121307499 121307632 -34322488 + B1_Mur2 SINE Alu 7 149 0 5 1510 396 277 188 0 chr4 121307635 121307747 -34322373 + B3 SINE B2 3 135 -81 5 1510 486 0 0 0 chr4 121307747 121307801 -34322319 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 1510 321 219 14 0 chr4 121307801 121307874 -34322246 + L1MB5 LINE L1 5794 5867 -307 5 1510 901 157 58 40 chr4 121307897 121308045 -34322075 + B2_Mm2 SINE B2 2 159 -36 5 1510 369 0 0 0 chr4 121308045 121308086 -34322034 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 5 1510 901 157 58 40 chr4 121308086 121308110 -34322010 + B2_Mm2 SINE B2 160 177 -18 5 1510 315 0 0 0 chr4 121308115 121308150 -34321970 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1510 314 278 99 65 chr4 121308175 121308437 -34321683 + L1MB5 LINE L1 5891 6161 -13 5 1510 640 337 22 0 chr4 121308502 121308686 -34321434 + ID_B1 SINE B4 1 188 -36 5 1510 289 314 0 0 chr4 121308706 121308776 -34321344 + B4A SINE B4 85 154 -138 5 1510 6932 135 9 34 chr4 121309009 121310139 -34319981 + Lx3C LINE L1 5873 6974 -2 5 1510 184 250 0 0 chr4 121310448 121310484 -34319636 + L2 LINE L2 1889 1924 -1495 5 1510 746 276 55 27 chr4 121311116 121311336 -34318784 - MERVK26-int LTR ERVK -6638 281 56 5 1510 393 329 80 46 chr4 121311725 121312049 -34318071 - RMER20B LTR ERVK -147 495 163 5 1510 659 112 9 0 chr4 121312457 121312564 -34317556 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1510 711 207 21 0 chr4 121313335 121313475 -34316645 + B1_Mus1 SINE Alu 6 148 0 5 1510 2324 137 16 50 chr4 121313538 121313916 -34316204 + RLTR8 LTR ERVK 1 365 0 5 1510 4348 148 50 1 chr4 121313916 121314633 -34315487 + SRV_MM-int LTR ERVK 1 752 -5415 5 1510 612 165 0 110 chr4 121314633 121314769 -34315351 + RLTR8 LTR ERVK 245 365 0 5 1510 280 289 13 13 chr4 121315616 121315693 -34314427 + GA-rich Low_complexity Low_complexity 2 78 0 5 1510 201 108 0 0 chr4 121316013 121316050 -34314070 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1510 5813 111 6 4 chr4 121316283 121317642 -34312478 + L1_Mus2 LINE L1 5014 6373 -193 5 1510 7067 106 26 7 chr4 121317664 121319143 -34310977 + L1_Mus1 LINE L1 5084 6654 0 5 1510 1367 214 138 11 chr4 121319307 121319656 -34310464 - ORR1B1 LTR MaLR -1 393 1 5 1510 547 296 30 18 chr4 121319656 121319798 -34310322 + B3 SINE B2 58 201 -15 5 1510 460 326 66 17 chr4 121319824 121320005 -34310115 - B3A SINE B2 -3 195 6 5 1510 1267 273 95 7 chr4 121320205 121320658 -34309462 + RCHARR1 DNA MER1_type 3 495 -479 5 1510 596 294 90 5 chr4 121320661 121320849 -34309271 + B3 SINE B2 2 205 -11 5 1510 374 320 48 0 chr4 121321137 121321240 -34308880 - B1F1 SINE Alu -37 112 5 5 1510 1231 233 101 35 chr4 121321273 121321620 -34308500 - ORR1D2 LTR MaLR 0 370 1 5 1510 621 106 0 0 chr4 121321976 121322089 -34308031 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 1510 447 305 20 45 chr4 121322202 121322401 -34307719 - B3A SINE B2 -3 195 2 6 1510 603 223 23 0 chr4 121322440 121322570 -34307550 - B1_Mur3 SINE Alu -8 141 9 6 1510 24 32 0 0 chr4 121322573 121322604 -34307516 + AT_rich Low_complexity Low_complexity 1 31 0 6 1510 391 349 31 8 chr4 121322660 121322787 -34307333 - B4A SINE B4 -85 207 78 6 1510 34 42 0 0 chr4 121323139 121323187 -34306933 + AT_rich Low_complexity Low_complexity 1 48 0 6 1510 211 309 0 0 chr4 121323202 121323257 -34306863 - B3 SINE B2 -84 132 78 6 1510 296 334 11 14 chr4 121323405 121323522 -34306598 - PB1D7 SINE Alu 0 120 3 6 1510 228 67 0 0 chr4 121323792 121323822 -34306298 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 6 1510 409 318 74 7 chr4 121323829 121323978 -34306142 - B3A SINE B2 -38 160 2 6 1510 389 401 6 37 chr4 121324001 121324164 -34305956 - RSINE1 SINE B4 0 165 8 6 1510 255 302 69 15 chr4 121324323 121324454 -34305666 - L2 LINE L2 -791 2628 2491 6 1510 389 336 35 7 chr4 121324774 121324918 -34305202 + RSINE1 SINE B4 8 155 -10 6 1510 678 172 0 26 chr4 121325140 121325295 -34304825 + A-rich Low_complexity Low_complexity 4 154 0 6 1510 364 341 15 7 chr4 121325361 121325497 -34304623 + B1_Mur2 SINE Alu 1 137 -12 6 1510 241 234 0 21 chr4 121325551 121325599 -34304521 + B3A SINE B2 5 51 -147 6 1510 5496 93 3 4 chr4 121325641 121325663 -34304457 + L1_Mm LINE L1 4289 4311 -1572 6 1510 1098 123 18 0 chr4 121325663 121325826 -34304294 - L1_Mus2 LINE L1 0 6566 6401 6 1510 5496 93 3 4 chr4 121325826 121326567 -34303553 + L1_Mm LINE L1 4312 5051 -832 6 1510 5139 109 5 1 chr4 121326570 121326939 -34303181 - L1Md_F LINE L1 -4330 1553 1183 6 1510 188 35 35 0 chr4 121326939 121326968 -34303152 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 1510 5139 142 29 4 chr4 121326968 121327748 -34302372 - L1Md_F LINE L1 -5434 1182 383 6 1510 2209 182 18 18 chr4 121327756 121328214 -34301906 + RMER6A LTR ERVK 299 756 0 6 1510 322 179 13 13 chr4 121328214 121328293 -34301827 + L1_Mur3 LINE L1 3324 3402 -2478 6 1510 582 96 0 0 chr4 121328293 121328376 -34301744 + RLTR19C LTR ERVK 1 83 -423 6 1510 1850 193 71 32 chr4 121328376 121328842 -34301278 + Lx2B LINE L1 5919 6402 -598 6 1510 998 146 176 72 chr4 121328847 121329199 -34300921 + RLTR19-int LTR ERVK 2968 3355 -2782 6 1510 392 279 28 46 chr4 121329344 121329453 -34300667 + B1F2 SINE Alu 25 131 -18 6 1510 21 0 0 0 chr4 121329453 121329474 -34300646 + AT_rich Low_complexity Low_complexity 1 21 0 6 1510 228 67 0 0 chr4 121329647 121329677 -34300443 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 6 1510 215 61 0 29 chr4 121329679 121329713 -34300407 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1510 232 331 133 61 chr4 121330012 121330276 -34299844 - L2 LINE L2 -630 2789 2507 6 1510 854 123 0 6 chr4 121330311 121330483 -34299637 + (GA)n Simple_repeat Simple_repeat 1 171 0 6 1510 330 352 0 9 chr4 121330488 121330594 -34299526 - RSINE1 SINE B4 -56 109 5 6 1510 707 240 196 0 chr4 121330657 121330836 -34299284 - B3 SINE B2 0 216 3 6 1510 307 253 22 11 chr4 121330944 121331036 -34299084 - ID_B1 SINE B4 -2 222 130 6 1510 6514 104 13 31 chr4 121331080 121332702 -34297418 + L1_Mus2 LINE L1 5103 6997 0 6 1510 333 299 9 36 chr4 121332771 121332882 -34297238 - B1F SINE Alu -20 129 22 6 1510 330 318 18 18 chr4 121333005 121333117 -34297003 - PB1D10 SINE Alu -5 112 1 6 1510 230 321 64 28 chr4 121333268 121333409 -34296711 - L2 LINE L2 -1183 2236 2091 6 1510 286 363 15 71 chr4 121333771 121333967 -34296153 - B3 SINE B2 -27 189 1 6 1510 353 297 40 0 chr4 121334028 121334129 -34295991 - PB1D7 SINE Alu -7 113 9 6 1510 715 247 41 0 chr4 121334391 121334561 -34295559 - B3A SINE B2 -21 177 1 6 1510 515 329 13 0 chr4 121334594 121334743 -34295377 - RSINE1 SINE B4 -4 161 11 6 1510 334 317 193 9 chr4 121334801 121335024 -34295096 - L2 LINE L2 -654 2765 2502 6 1510 423 0 0 0 chr4 121335038 121335085 -34295035 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1510 408 285 67 34 chr4 121335388 121335537 -34294583 + RSINE1 SINE B4 3 156 -9 6 1510 348 296 104 0 chr4 121335656 121335771 -34294349 + ID_B1 SINE B4 91 217 -7 6 1510 589 225 52 52 chr4 121335867 121336003 -34294117 + B1_Mur2 SINE Alu 10 145 -4 6 1510 360 279 117 78 chr4 121337115 121337321 -34292799 + RMER2 LTR ERV1 326 539 -28 6 1510 2385 119 169 0 chr4 121337499 121337672 -34292448 - BGLII_Mus LTR ERVK 0 422 250 6 1510 774 84 0 0 chr4 121337672 121337779 -34292341 + (TCTCCC)n Simple_repeat Simple_repeat 1 107 0 6 1510 2385 119 169 0 chr4 121337779 121337966 -34292154 - BGLII_Mus LTR ERVK -173 249 2 6 1510 244 0 56 0 chr4 121337983 121338019 -34292101 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1510 251 241 17 0 chr4 121338066 121338124 -34291996 - RSINE1 SINE B4 -96 69 11 6 1510 506 223 127 30 chr4 121338695 121338829 -34291291 - B1_Mur3 SINE Alu 0 149 3 6 1510 489 231 31 123 chr4 121339453 121339616 -34290504 - B1_Mus1 SINE Alu 0 148 1 6 1510 13405 81 1 1 chr4 121339783 121341554 -34288566 + L1Md_F2 LINE L1 3816 5586 -297 6 1510 8224 63 0 5 chr4 121341555 121342543 -34287577 + L1Md_F2 LINE L1 5588 6570 -12 6 1510 479 296 74 118 chr4 121342543 121342933 -34287187 - RLTR23 LTR ERV1 -22 408 36 6 1510 323 318 8 8 chr4 121343329 121343456 -34286664 + CT-rich Low_complexity Low_complexity 2 128 0 6 1510 391 265 12 0 chr4 121343468 121343551 -34286569 - B1_Mur1 SINE Alu -40 109 26 6 1510 4654 113 16 3 chr4 121343928 121344603 -34285517 - L1_Mm LINE L1 -302 5581 4898 6 1510 373 370 81 25 chr4 121344636 121344833 -34285287 + B3 SINE B2 9 216 0 6 1510 320 274 61 40 chr4 121344871 121344970 -34285150 + B4 SINE B4 3 103 -189 6 1510 7417 98 13 2 chr4 121344972 121346006 -34284114 + L1_Mus3 LINE L1 5588 6632 -6 6 1510 433 341 89 42 chr4 121346036 121346226 -34283894 - B3 SINE B2 -9 207 9 6 1510 27 0 0 0 chr4 121346230 121346257 -34283863 + AT_rich Low_complexity Low_complexity 1 27 0 6 1510 362 374 18 31 chr4 121346257 121346300 -34283820 - RSINE1 SINE B4 0 165 124 6 1510 516 16 0 0 chr4 121346300 121346361 -34283759 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1510 362 374 18 31 chr4 121346361 121346480 -34283640 - RSINE1 SINE B4 -42 123 5 6 1510 241 118 0 38 chr4 121346502 121346555 -34283565 + CT-rich Low_complexity Low_complexity 2 52 0 6 1510 182 136 23 0 chr4 121346557 121346601 -34283519 + T-rich Low_complexity Low_complexity 3 47 0 6 1510 496 254 85 0 chr4 121346608 121346738 -34283382 - B1_Mur3 SINE Alu -1 148 8 6 1510 260 196 36 0 chr4 121347350 121347406 -34282714 + B2_Mm2 SINE B2 20 77 -118 6 1510 4065 99 73 96 chr4 121347924 121348693 -34281427 - RMER17A LTR ERVK 0 751 1 6 1510 6748 117 41 33 chr4 121348695 121349856 -34280264 - RMER17A-int LTR ERVK -1 1727 218 6 1510 1063 178 77 0 chr4 121349961 121350169 -34279951 - RMER17A-int LTR ERVK -1504 224 1 6 1510 3663 117 23 57 chr4 121350170 121350894 -34279226 - RMER17A LTR ERVK -268 690 26 6 1510 408 351 8 0 chr4 121351327 121351458 -34278662 - B1_Mus2 SINE Alu -15 132 1 6 1510 325 328 89 7 chr4 121351586 121351721 -34278399 - ID_B1 SINE B4 -2 222 77 6 1510 268 268 81 11 chr4 121351823 121351910 -34278210 - RSINE1 SINE B4 -19 146 54 6 1510 382 296 231 7 chr4 121352217 121352486 -34277634 + L2 LINE L2 2485 2813 -606 6 1510 396 344 92 0 chr4 121352605 121352768 -34277352 + B3A SINE B2 2 179 -19 6 1510 394 286 9 19 chr4 121352999 121353106 -34277014 + PB1D10 SINE Alu 2 107 -10 6 1510 369 315 29 113 chr4 121353181 121353385 -34276735 + B3 SINE B2 1 187 -8 6 1510 225 357 32 71 chr4 121353639 121353793 -34276327 + B4A SINE B4 3 150 -142 6 1510 274 276 8 101 chr4 121353790 121353919 -34276201 + B2_Mm2 SINE B2 5 121 -74 6 1510 777 110 0 0 chr4 121353964 121354109 -34276011 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 1510 468 0 0 0 chr4 121354109 121354160 -34275960 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1510 512 299 95 98 chr4 121354296 121354644 -34275476 + RLTR26 LTR ERVK 121 467 -175 6 1510 364 250 13 0 chr4 121354981 121355057 -34275063 + B4A SINE B4 212 288 -4 6 1510 285 182 0 0 chr4 121355078 121355133 -34274987 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1510 891 286 90 20 chr4 121355493 121355839 -34274281 + ORR1D2 LTR MaLR 1 370 0 6 1510 405 259 18 53 chr4 121355872 121355986 -34274134 + PB1D10 SINE Alu 5 114 -3 6 1510 886 204 210 8 chr4 121356271 121356528 -34273592 - RMER4B LTR ERVK -13 572 264 6 1510 741 225 30 38 chr4 121356697 121356933 -34273187 - RMER4B LTR ERVK -337 248 15 6 1510 604 307 93 22 chr4 121356939 121357122 -34272998 - B3 SINE B2 -20 196 1 6 1510 1171 281 104 23 chr4 121357122 121357568 -34272552 - RCHARR1 DNA MER1_type -482 492 8 6 1510 4611 192 79 50 chr4 121357631 121358702 -34271418 + RLTR25A LTR ERVK 1 1103 0 6 1510 827 291 111 31 chr4 121358906 121359520 -34270600 + L1MB5 LINE L1 5503 6165 -9 6 1510 509 356 22 6 chr4 121359592 121359773 -34270347 + ID_B1 SINE B4 1 184 -40 6 1510 283 250 128 23 chr4 121359792 121359878 -34270242 + B1F1 SINE Alu 2 96 -53 6 1510 273 315 46 33 chr4 121360732 121360883 -34269237 + L2 LINE L2 2083 2235 -1184 6 1510 433 303 14 77 chr4 121361235 121361378 -34268742 + B1F SINE Alu 14 147 -2 6 1510 1194 61 0 51 chr4 121361398 121361554 -34268566 + B1_Mus1 SINE Alu 1 148 0 6 1510 276 154 0 0 chr4 121361557 121361609 -34268511 + (CATA)n Simple_repeat Simple_repeat 2 53 0 6 1510 438 108 0 0 chr4 121361609 121361674 -34268446 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 6 1510 284 271 51 20 chr4 121361678 121361776 -34268344 + ID_B1 SINE B4 124 224 0 6 1510 330 319 0 0 chr4 121361915 121362009 -34268111 + RSINE1 SINE B4 38 131 -34 6 1510 531 0 0 0 chr4 121362020 121362079 -34268041 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1510 423 0 0 0 chr4 121362079 121362125 -34267995 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1510 381 43 0 0 chr4 121362343 121362390 -34267730 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 7 1510 211 267 17 0 chr4 121362410 121362470 -34267650 + CT-rich Low_complexity Low_complexity 6 66 0 7 1510 329 17 16 49 chr4 121362560 121362621 -34267499 + (CAAAA)n Simple_repeat Simple_repeat 4 62 0 7 1510 339 113 19 0 chr4 121362905 121362958 -34267162 + ORR1B1 LTR MaLR 341 394 0 7 1510 514 250 62 12 chr4 121363916 121364100 -34266020 - RMER12 LTR ERVK 0 1322 1073 7 1510 315 0 0 0 chr4 121364146 121364181 -34265939 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1510 379 325 0 0 chr4 121364181 121364274 -34265846 - RMER12 LTR ERVK -436 886 794 7 1510 363 44 0 0 chr4 121364274 121364319 -34265801 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1510 379 325 0 0 chr4 121364319 121364342 -34265778 - RMER12 LTR ERVK -529 793 771 7 1510 4779 169 18 6 chr4 121364381 121364939 -34265181 - Lx2 LINE L1 -539 6458 5914 7 1510 581 49 12 0 chr4 121364939 121365020 -34265100 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 1510 4779 167 18 6 chr4 121365020 121365325 -34264795 - Lx2 LINE L1 -1084 5913 5603 7 1510 3214 148 13 21 chr4 121365326 121365849 -34264271 + Lx2 LINE L1 6479 6997 0 7 1510 304 277 0 12 chr4 121366009 121366093 -34264027 + CT-rich Low_complexity Low_complexity 2 84 0 7 1510 570 261 49 0 chr4 121366950 121367092 -34263028 + B1_Mur3 SINE Alu 1 149 0 7 1510 245 329 0 0 chr4 121367112 121367182 -34262938 + ID4_ SINE ID 2 71 -12 7 1510 379 292 9 9 chr4 121367184 121367291 -34262829 + B3 SINE B2 100 206 -10 7 1510 2226 106 9 3 chr4 121367712 121368035 -34262085 + MTB LTR MaLR 3 327 -73 7 1510 315 184 58 142 chr4 121368060 121368180 -34261940 + L1VL1 LINE L1 256 365 -6057 7 1510 509 218 47 48 chr4 121368257 121368438 -34261682 + L1_Mus1 LINE L1 549 829 -5790 7 1510 2501 172 10 19 chr4 121368419 121368689 -34261431 + L1_Mus1 LINE L1 728 996 -5623 7 1510 2308 104 82 0 chr4 121368689 121369017 -34261103 - IAPEY2_LTR LTR ERVK -2 355 1 7 1510 17644 142 5 48 chr4 121369017 121370811 -34259309 + L1_Mus1 LINE L1 997 2583 -3303 7 1510 3031 96 8 0 chr4 121370811 121371208 -34258912 + MTB LTR MaLR 1 400 0 7 188 17644 131 4 28 chr4 121371208 121372735 -34257385 + L1_Mus1 LINE L1 2584 4113 -1773 7 1511 7045 112 9 18 chr4 121372729 121374451 -34255669 + L1_Mus1 LINE L1 4867 6570 0 7 1511 202 224 0 0 chr4 121374456 121374505 -34255615 + A-rich Low_complexity Low_complexity 1 49 0 7 1511 602 98 0 0 chr4 121374508 121374590 -34255530 + MTB LTR MaLR 319 400 0 7 1511 7256 110 50 6 chr4 121374590 121375641 -34254479 + MTB-int LTR MaLR 1 1098 0 7 1511 2793 88 61 3 chr4 121375641 121376019 -34254101 + MTB LTR MaLR 1 400 0 7 1511 1745 222 44 48 chr4 121376331 121376617 -34253503 - Lx4B LINE L1 -9 7049 6754 7 1511 378 0 0 0 chr4 121376617 121376659 -34253461 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1511 1745 222 44 48 chr4 121376659 121376831 -34253289 - Lx4B LINE L1 -305 6753 6593 7 1511 1150 211 114 4 chr4 121376845 121377125 -34252995 - L1_Mur2 LINE L1 -175 5702 5392 7 1511 266 339 18 9 chr4 121377578 121377589 -34252531 - PB1D10 SINE Alu -1 116 106 7 1511 674 72 10 0 chr4 121377589 121377686 -34252434 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 7 1511 266 339 18 9 chr4 121377686 121377787 -34252333 - PB1D10 SINE Alu -12 105 3 7 1511 287 326 22 0 chr4 121377696 121377788 -34252332 - ID_B1 SINE B4 -48 176 83 7 1511 628 322 49 0 chr4 121377821 121378026 -34252094 - B3 SINE B2 0 216 2 7 1511 437 353 44 13 chr4 121378087 121378245 -34251875 - B3A SINE B2 -34 164 2 7 1511 435 38 0 0 chr4 121378251 121378304 -34251816 + (TTAG)n Simple_repeat Simple_repeat 4 56 0 7 1511 300 253 36 0 chr4 121378535 121378618 -34251502 - PB1D9 SINE Alu -25 95 10 7 1511 281 338 37 15 chr4 121378705 121378840 -34251280 + B1F2 SINE Alu 4 141 -8 7 1511 698 293 73 21 chr4 121378853 121379045 -34251075 + B3 SINE B2 1 202 -14 7 1511 462 36 0 0 chr4 121379056 121379112 -34251008 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 7 1511 932 309 15 0 chr4 121379128 121379393 -34250727 + B4 SINE B4 2 270 -22 7 1511 423 0 0 0 chr4 121379401 121379448 -34250672 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1511 477 120 0 0 chr4 121379448 121379540 -34250580 + (GA)n Simple_repeat Simple_repeat 1 92 0 7 1511 373 271 27 89 chr4 121379598 121379744 -34250376 + ID_B1 SINE B4 69 205 -19 7 1511 1666 121 4 0 chr4 121379763 121380011 -34250109 - L1_Mm LINE L1 -906 4977 4729 7 1511 215 31 31 0 chr4 121380011 121380043 -34250077 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 1511 228 325 75 0 chr4 121380060 121380140 -34249980 + PB1D9 SINE Alu 20 105 -15 7 1511 253 274 10 59 chr4 121380199 121380300 -34249820 - YREP_Mm Unknown Unknown -1494 318 223 7 1511 543 252 0 47 chr4 121380223 121380352 -34249768 + B1F SINE Alu 22 144 -5 7 1511 234 0 0 0 chr4 121380355 121380381 -34249739 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1511 368 345 7 7 chr4 121380461 121380601 -34249519 + ID_B1 SINE B4 64 203 -21 7 1511 464 312 0 42 chr4 121380640 121380784 -34249336 + RSINE1 SINE B4 22 159 -6 7 1511 199 353 76 0 chr4 121380791 121380910 -34249210 + L2 LINE L2 2477 2604 -815 7 1511 183 299 184 6 chr4 121380954 121381122 -34248998 - L2 LINE L2 -1353 2066 1869 7 1511 2757 157 32 6 chr4 121381698 121382172 -34247948 + Lx LINE L1 6165 6650 -4 7 1511 918 298 135 17 chr4 121382406 121383089 -34247031 - L1MB5 LINE L1 -9 6165 5396 7 1511 434 276 31 23 chr4 121383187 121383317 -34246803 - B3 SINE B2 0 216 86 7 1511 399 236 23 61 chr4 121383364 121383495 -34246625 - B1_Mur1 SINE Alu -1 148 23 7 1511 530 325 24 0 chr4 121383538 121383744 -34246376 + B3 SINE B2 2 212 -4 7 1511 282 263 10 78 chr4 121383856 121383959 -34246161 - B1_Mur4 SINE Alu -1 149 54 7 1511 423 0 0 0 chr4 121384040 121384087 -34246033 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1511 315 283 86 7 chr4 121384221 121384360 -34245760 + RCHARR1 DNA MER1_type 6 155 -819 7 1511 276 328 0 0 chr4 121384496 121384560 -34245560 - B1F SINE Alu -85 64 1 7 1511 399 364 24 12 chr4 121384595 121384759 -34245361 - ID_B1 SINE B4 -57 167 2 7 1511 702 337 106 4 chr4 121384817 121385374 -34244746 - L1MB5 LINE L1 -58 6116 5503 7 1511 4297 200 75 55 chr4 121385577 121386657 -34243463 - RLTR25A LTR ERVK -1 1102 1 7 1511 1174 273 112 11 chr4 121386725 121387162 -34242958 + RCHARR1 DNA MER1_type 14 494 -480 7 1511 539 317 94 0 chr4 121387165 121387345 -34242775 + B3 SINE B2 1 197 -19 7 1511 524 192 19 0 chr4 121387350 121387454 -34242666 + RMER4B LTR ERVK 15 120 -465 7 1511 20974 103 33 1 chr4 121387454 121388391 -34241729 - L1_Mus2 LINE L1 -319 6247 5288 7 1511 3145 50 28 0 chr4 121388391 121388788 -34241332 - L1Md_F3 LINE L1 -14 6570 6163 7 1511 20974 135 9 3 chr4 121388788 121389692 -34240428 - L1_Mus2 LINE L1 -596 5287 4377 7 1511 261 0 0 0 chr4 121389692 121389721 -34240399 + (TTATA)n Simple_repeat Simple_repeat 5 33 0 7 1511 20974 135 9 3 chr4 121389721 121391850 -34238270 - L1_Mus2 LINE L1 -1507 4376 2238 7 1511 588 270 139 5 chr4 121391856 121392057 -34238063 - ORR1D2 LTR MaLR -3 367 140 7 1511 418 322 57 8 chr4 121392071 121392109 -34238011 - B1_Mur2 SINE Alu -21 128 86 7 1511 369 0 0 0 chr4 121392109 121392150 -34237970 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1511 418 322 57 8 chr4 121392150 121392233 -34237887 - B1_Mur2 SINE Alu -64 85 1 7 1511 430 270 51 7 chr4 121392324 121392345 -34237775 - B1F SINE Alu 0 149 6 7 1511 505 250 8 8 chr4 121392345 121392462 -34237658 - ID_B1 SINE B4 -21 203 87 7 1511 541 338 23 77 chr4 121392479 121392700 -34237420 + B4A SINE B4 2 210 -82 7 1511 510 125 0 0 chr4 121392700 121392780 -34237340 + (CAT)n Simple_repeat Simple_repeat 2 81 0 7 1511 314 261 235 0 chr4 121392842 121392957 -34237163 + B1_Mus2 SINE Alu 5 146 -1 7 1511 282 116 0 0 chr4 121392987 121393030 -34237090 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 7 1511 607 309 5 72 chr4 121393043 121393252 -34236868 + B3A SINE B2 2 196 -2 7 1511 447 19 0 0 chr4 121393385 121393437 -34236683 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1511 198 0 0 0 chr4 121393437 121393458 -34236662 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1511 880 286 90 12 chr4 121393828 121394171 -34235949 + ORR1D2 LTR MaLR 1 370 0 7 1511 294 278 62 44 chr4 121394202 121394315 -34235805 + PB1D10 SINE Alu 3 117 0 7 1511 1760 214 184 30 chr4 121394597 121395093 -34235027 - RMER4B LTR ERVK 0 585 14 7 1511 455 287 204 0 chr4 121395094 121395261 -34234859 - B3 SINE B2 -15 201 1 7 1511 1264 257 111 24 chr4 121395266 121395717 -34234403 - RCHARR1 DNA MER1_type -482 492 3 7 1511 333 0 0 0 chr4 121395798 121395835 -34234285 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1511 235 224 52 0 chr4 121395837 121395895 -34234225 + B1F1 SINE Alu 88 148 -1 7 1511 494 314 124 10 chr4 121395901 121396094 -34234026 + B3 SINE B2 2 216 0 7 1511 280 302 0 0 chr4 121396141 121396204 -34233916 + ID_B1 SINE B4 105 167 -57 7 1511 225 0 0 0 chr4 121396621 121396646 -34233474 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1511 254 337 0 0 chr4 121397121 121397210 -34232910 - PB1D7 SINE Alu -31 89 1 7 1511 249 326 30 30 chr4 121397221 121397354 -34232766 + L2 LINE L2 2103 2235 -1184 7 1511 278 284 134 27 chr4 121397466 121397578 -34232542 + B1F SINE Alu 18 141 -8 7 1511 382 268 136 38 chr4 121397618 121397750 -34232370 + B1F SINE Alu 3 147 -2 7 1511 389 341 15 7 chr4 121397842 121397978 -34232142 + ID_B1 SINE B4 64 200 -24 7 1511 384 324 44 0 chr4 121398021 121398157 -34231963 + RSINE1 SINE B4 23 164 -1 7 1511 255 330 68 0 chr4 121398158 121398276 -34231844 + L2 LINE L2 2479 2604 -815 7 1511 218 286 196 36 chr4 121398336 121398474 -34231646 - L2 LINE L2 -1371 2048 1889 7 1511 2450 151 79 11 chr4 121399069 121399524 -34230596 + Lx LINE L1 6165 6650 -4 7 1511 240 396 99 19 chr4 121399525 121399687 -34230433 - ID_B1 SINE B4 -49 175 1 7 1511 334 340 97 9 chr4 121399751 121399968 -34230152 - L1MB8 LINE L1 -9 6165 5930 7 1511 521 259 61 30 chr4 121400035 121400266 -34229854 - L1MB8 LINE L1 -323 5855 5618 7 1511 452 348 36 0 chr4 121400272 121400410 -34229710 - B3 SINE B2 -9 207 65 7 1511 540 184 17 72 chr4 121400454 121400592 -34229528 - B1_Mur1 SINE Alu -1 148 17 8 1511 403 355 24 0 chr4 121400622 121400791 -34229329 + B3 SINE B2 35 207 -9 8 1511 189 0 0 0 chr4 121400882 121400903 -34229217 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1511 333 200 11 86 chr4 121400905 121400998 -34229122 - B1_Mur4 SINE Alu -2 148 63 8 1511 334 0 43 0 chr4 121401087 121401133 -34228987 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1511 366 295 76 15 chr4 121401265 121401396 -34228724 + RCHARR1 DNA MER1_type 3 141 -833 8 1511 300 230 111 43 chr4 121401501 121401606 -34228514 - B1F SINE Alu -35 114 3 8 1511 404 371 50 20 chr4 121401606 121401803 -34228317 - ID_B1 SINE B4 -20 204 2 8 1511 332 346 88 5 chr4 121401876 121402283 -34227837 - L1MB5 LINE L1 -9 6165 5725 8 1511 1911 145 0 101 chr4 121402288 121402634 -34227486 + RLTR10E LTR ERVK 1 311 0 8 1511 550 103 35 0 chr4 121402634 121402721 -34227399 + MMERVK10C-int LTR ERVK 1 90 -7491 8 1511 253 235 0 19 chr4 121402724 121402776 -34227344 + RLTR27 LTR ERVK 222 272 -37 8 1511 6502 122 7 0 chr4 121402776 121403781 -34226339 + MMERVK10C-int LTR ERVK 222 1233 -6348 8 1511 26450 82 5 4 chr4 121403808 121407479 -34222641 + MMERVK10C-int LTR ERVK 3531 7206 -375 8 1511 1923 217 10 74 chr4 121407554 121408048 -34222072 - RLTR25A LTR ERVK -1 1102 641 8 1511 3669 143 30 20 chr4 121408048 121409128 -34220992 + RLTR13D1 LTR ERVK 1 806 0 8 1511 1660 261 59 106 chr4 121409128 121409400 -34220720 - RLTR25A LTR ERVK -457 646 373 8 1511 1161 81 0 0 chr4 121409400 121409548 -34220572 + B1_Mus1 SINE Alu 1 148 0 8 1511 1660 261 59 106 chr4 121409548 121409952 -34220168 - RLTR25A LTR ERVK -731 372 2 8 1511 892 298 94 29 chr4 121410016 121410390 -34219730 + RCHARR1 DNA MER1_type 8 405 -569 8 1511 406 139 14 14 chr4 121410394 121410467 -34219653 - RLTR25B LTR ERVK -616 412 340 8 1511 575 300 47 9 chr4 121410551 121410731 -34219389 + B3 SINE B2 1 197 -19 8 1511 894 241 42 23 chr4 121410731 121411064 -34219056 + RMER4B LTR ERVK 1 353 -113 8 1511 815 234 262 14 chr4 121411138 121411420 -34218700 + RMER4B LTR ERVK 234 585 0 8 1511 387 0 0 0 chr4 121411423 121411466 -34218654 + (TA)n Simple_repeat Simple_repeat 1 43 0 8 1511 407 255 21 0 chr4 121411753 121411847 -34218273 - PB1D10 SINE Alu -17 100 5 8 1511 1045 284 81 14 chr4 121411880 121412227 -34217893 - ORR1D2 LTR MaLR 0 370 1 8 1511 420 37 0 0 chr4 121412589 121412643 -34217477 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1511 395 234 0 0 chr4 121412665 121412742 -34217378 - B4A SINE B4 -4 288 212 8 1511 556 336 47 60 chr4 121413070 121413371 -34216749 - RLTR26 LTR ERVK -168 474 178 8 1511 300 305 16 95 chr4 121413530 121413719 -34216401 - B3A SINE B2 0 216 2 8 1511 209 83 28 0 chr4 121413723 121413759 -34216361 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 8 1511 211 196 22 0 chr4 121413869 121413915 -34216205 - B1_Mur4 SINE Alu -103 47 1 8 1511 192 77 0 0 chr4 121413968 121413994 -34216126 + (ATG)n Simple_repeat Simple_repeat 2 27 0 8 1511 5868 13 0 0 chr4 121413996 121414692 -34215428 + L1Md_A LINE L1 4891 5586 -297 8 1511 8749 18 0 0 chr4 121414692 121415688 -34214432 + L1Md_A LINE L1 5587 6582 0 8 1511 508 315 36 95 chr4 121415691 121415912 -34214208 - B4A SINE B4 -82 210 3 8 1511 958 119 19 0 chr4 121415963 121416122 -34213998 - L1_Mus3 LINE L1 -7 6631 6470 8 1511 323 260 79 135 chr4 121416410 121416588 -34213532 - RLTR43A LTR ERVK -2 362 195 8 1511 213 302 0 19 chr4 121417155 121417209 -34212911 + PB1D9 SINE Alu 32 84 -36 8 1511 1600 153 57 72 chr4 121417742 121418074 -34212046 + ORR1A2 LTR MaLR 1 327 0 8 1511 498 49 37 0 chr4 121418190 121418272 -34211848 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 8 1511 430 383 19 0 chr4 121418313 121418475 -34211645 - ID_B1 SINE B4 -49 175 11 8 1511 598 235 82 16 chr4 121418582 121418764 -34211356 + RMER19C LTR ERVK 1 194 -417 8 1511 3432 219 21 11 chr4 121418764 121419480 -34210640 + MurERV4_19-int LTR ERVK 312 1035 -4745 8 1511 849 191 0 6 chr4 121419480 121419654 -34210466 + Lx LINE L1 6475 6647 -7 8 1511 3432 219 21 11 chr4 121419654 121419699 -34210421 + MurERV4_19-int LTR ERVK 1036 1080 -4700 8 1511 235 253 238 83 chr4 121419760 121419941 -34210179 - B3 SINE B2 -7 209 1 8 1511 280 356 38 9 chr4 121420014 121420119 -34210001 - PB1D10 SINE Alu -7 110 3 8 1511 297 0 0 0 chr4 121420284 121420317 -34209803 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1511 531 0 0 0 chr4 121420317 121420375 -34209745 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1511 427 349 17 29 chr4 121420441 121420615 -34209505 - B3A SINE B2 -23 175 4 8 1511 22 35 0 0 chr4 121420617 121420646 -34209474 + AT_rich Low_complexity Low_complexity 1 29 0 8 1511 381 383 13 13 chr4 121420651 121420807 -34209313 - RSINE1 SINE B4 -6 159 4 8 1511 309 330 192 4 chr4 121420860 121421094 -34209026 - L2 LINE L2 -657 2762 2485 8 1511 290 286 26 0 chr4 121421485 121421562 -34208558 + RSINE1 SINE B4 81 159 -6 8 1511 568 302 0 8 chr4 121421669 121421799 -34208321 + ID_B1 SINE B4 76 204 -20 8 1511 481 246 55 0 chr4 121421896 121422006 -34208114 + B1_Mur2 SINE Alu 22 137 -12 8 1511 238 220 0 20 chr4 121422055 121422106 -34208014 + B3A SINE B2 2 51 -147 8 1511 218 365 10 0 chr4 121422751 121422855 -34207265 + CT-rich Low_complexity Low_complexity 1 105 0 8 1511 1672 136 27 14 chr4 121423779 121424071 -34206049 + L1_Mus3 LINE L1 6342 6637 -1 8 1511 331 201 141 0 chr4 121424097 121424203 -34205917 + B1_Mur2 SINE Alu 11 129 -21 8 1511 221 169 26 0 chr4 121424208 121424285 -34205835 + A-rich Low_complexity Low_complexity 4 82 0 8 1511 280 318 55 103 chr4 121424321 121424486 -34205634 + RSINE1 SINE B4 7 163 -2 8 1511 24 32 0 0 chr4 121424486 121424517 -34205603 + AT_rich Low_complexity Low_complexity 1 31 0 8 1511 1666 199 13 3 chr4 121424550 121424863 -34205257 - ORR1A2 LTR MaLR -7 320 5 8 1511 381 306 106 26 chr4 121424885 121425036 -34205084 + B3 SINE B2 54 216 0 8 1511 696 333 68 0 chr4 121425081 121425315 -34204805 + B4A SINE B4 2 251 -41 8 1511 3145 106 4 13 chr4 121425371 121425830 -34204290 + L1_Mus2 LINE L1 6112 6566 0 8 1511 256 348 104 0 chr4 121425863 121425978 -34204142 - ID_B1 SINE B4 -16 208 82 8 1511 593 245 14 7 chr4 121426000 121426140 -34203980 - B1_Mm SINE Alu -6 141 1 8 1511 420 265 10 0 chr4 121426901 121427003 -34203117 + B1_Mur1 SINE Alu 26 128 -21 8 1511 490 131 10 10 chr4 121427008 121427108 -34203012 + GA-rich Low_complexity Low_complexity 2 101 0 8 1511 261 222 0 0 chr4 121428012 121428075 -34202045 + L1_Mus4 LINE L1 5241 5303 -580 8 1511 1168 82 0 0 chr4 121428075 121428222 -34201898 + B1_Mus2 SINE Alu 1 147 0 8 1511 420 77 0 0 chr4 121428224 121428289 -34201831 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 8 1511 391 166 6 34 chr4 121428289 121428399 -34201721 + L1_Mur2 LINE L1 5271 5373 -513 8 1511 221 324 131 62 chr4 121428499 121428759 -34201361 + L2a LINE L2 2979 3256 -170 8 1511 400 222 89 0 chr4 121428790 121428917 -34201203 - RMER12 LTR ERVK -29 1293 1097 8 1511 654 136 84 0 chr4 121428972 121429109 -34201011 + L1_Mus4 LINE L1 5566 5712 -171 8 1511 180 111 0 0 chr4 121429735 121429762 -34200358 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 8 1511 231 125 0 0 chr4 121429790 121429830 -34200290 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1511 264 77 0 0 chr4 121429893 121429932 -34200188 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 8 1511 516 16 0 0 chr4 121430092 121430153 -34199967 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1511 236 191 0 0 chr4 121430199 121430241 -34199879 - RSINE1 SINE B4 -87 78 37 8 1511 314 266 63 0 chr4 121430389 121430468 -34199652 - ID_B1 SINE B4 -7 217 134 8 1511 32327 82 5 4 chr4 121430475 121436654 -34193466 - L1Md_F2 LINE L1 0 6582 392 8 1511 305 363 26 0 chr4 121436684 121436797 -34193323 - B1F SINE Alu -11 138 23 8 1511 19625 131 19 7 chr4 121437118 121441254 -34188866 + L1_Mus1 LINE L1 2384 6567 0 8 1511 521 341 44 6 chr4 121441268 121441451 -34188669 + B3 SINE B2 27 216 0 8 1511 271 356 0 0 chr4 121441493 121441583 -34188537 + PB1D10 SINE Alu 13 102 -15 8 1511 477 50 0 0 chr4 121441586 121441646 -34188474 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 8 1511 846 138 0 29 chr4 121441646 121441818 -34188302 + G-rich Low_complexity Low_complexity 2 168 0 8 1511 1131 215 98 3 chr4 121442308 121442593 -34187527 + L1_Mur2 LINE L1 5392 5703 -174 8 1511 1601 206 59 33 chr4 121442615 121442774 -34187346 + Lx4B LINE L1 6602 6768 -290 8 1511 483 18 0 0 chr4 121442774 121442830 -34187290 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1511 1601 206 59 33 chr4 121442830 121443096 -34187024 + Lx4B LINE L1 6769 7038 -20 8 1511 366 269 25 25 chr4 121443837 121443955 -34186165 - B3 SINE B2 -6 210 93 8 1511 656 217 28 14 chr4 121444037 121444182 -34185938 - B1_Mur3 SINE Alu -2 147 1 8 1511 1125 82 0 0 chr4 121444841 121444988 -34185132 + B1_Mus1 SINE Alu 2 148 0 8 1511 198 0 0 0 chr4 121444988 121445010 -34185110 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1511 295 41 41 0 chr4 121445012 121445061 -34185059 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 8 1511 722 225 6 0 chr4 121445231 121445409 -34184711 + GA-rich Low_complexity Low_complexity 2 180 0 8 1511 1174 168 0 0 chr4 121445793 121445983 -34184137 - Lx2 LINE L1 -331 6666 6477 8 1511 1884 110 68 7 chr4 121445984 121446277 -34183843 + Lx2 LINE L1 5595 5905 -1092 8 1511 1068 70 0 0 chr4 121446280 121446422 -34183698 + (GGGAGA)n Simple_repeat Simple_repeat 3 144 0 8 1511 2032 189 17 24 chr4 121446423 121446800 -34183320 + Lx2 LINE L1 6044 6424 -573 8 1511 4913 130 45 21 chr4 121446800 121447666 -34182454 + RMER17D LTR ERVK 1 887 -2 8 1511 2032 189 17 24 chr4 121447666 121447706 -34182414 + Lx2 LINE L1 6425 6458 -539 8 1511 1366 201 7 0 chr4 121448473 121448756 -34181364 + RMER12 LTR ERVK 1 285 -1037 8 1511 4356 88 0 0 chr4 121498756 121499316 -34130804 + MMERVK10C-int LTR ERVK 4325 4884 -2697 8 1511 5213 84 0 12 chr4 121499314 121500000 -34130120 + MMERVK10C-int LTR ERVK 5215 5892 -1689 8 1511 9949 96 5 3 chr4 121500000 121501759 -34128361 + MMERVK10C-int LTR ERVK 5893 7680 0 1 1511 1796 154 150 11 chr4 121501759 121502139 -34127981 + RLTR10C LTR ERVK 1 433 -3 1 1511 1882 207 12 74 chr4 121502542 121503034 -34127086 - RLTR25B LTR ERVK -1 1102 642 2 188 3702 169 53 48 chr4 121503034 121504104 -34126016 + RLTR13D1 LTR ERVK 1 1023 0 3 1512 2481 201 17 101 chr4 121504104 121504376 -34125744 - RLTR25B LTR ERVK -453 575 316 2 1512 1094 101 0 0 chr4 121504376 121504524 -34125596 + B1_Mus1 SINE Alu 1 148 0 4 1512 2481 201 17 101 chr4 121504524 121504859 -34125261 - RLTR25B LTR ERVK -713 315 21 2 1512 1037 285 134 27 chr4 121504949 121505389 -34124731 + RCHARR1 DNA MER1_type 14 505 -469 5 1512 575 320 99 6 chr4 121505389 121505567 -34124553 + B3 SINE B2 3 197 -19 6 1512 832 243 64 23 chr4 121505567 121505900 -34124220 + RMER4B LTR ERVK 1 353 -113 7 1512 866 229 255 7 chr4 121505972 121506254 -34123866 + RMER4B LTR ERVK 234 585 0 7 1512 369 0 0 0 chr4 121506257 121506298 -34123822 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1512 385 235 47 75 chr4 121506568 121506674 -34123446 - PB1D7 SINE Alu -3 117 15 9 1512 1026 279 87 20 chr4 121506720 121507067 -34123053 - ORR1D2 LTR MaLR 0 370 1 1 1512 600 27 0 0 chr4 121507429 121507503 -34122617 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1512 556 336 47 60 chr4 121507930 121508231 -34121889 - RLTR26 LTR ERVK -168 474 178 1 1512 300 305 16 95 chr4 121508391 121508580 -34121540 - B3A SINE B2 0 216 2 1 1512 209 83 28 0 chr4 121508584 121508620 -34121500 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 1 1512 211 196 22 0 chr4 121508730 121508776 -34121344 - B1_Mur4 SINE Alu -103 47 1 1 1512 192 77 0 0 chr4 121508829 121508855 -34121265 + (ATG)n Simple_repeat Simple_repeat 2 27 0 1 1512 5853 14 0 0 chr4 121508857 121509553 -34120567 + L1Md_A LINE L1 4891 5586 -297 1 1512 8749 18 0 0 chr4 121509553 121510549 -34119571 + L1Md_A LINE L1 5587 6582 0 1 1512 508 315 36 95 chr4 121510552 121510773 -34119347 - B4A SINE B4 -82 210 3 1 1512 958 119 19 0 chr4 121510824 121510983 -34119137 - L1_Mus3 LINE L1 -7 6631 6470 1 1512 323 260 79 135 chr4 121511271 121511449 -34118671 - RLTR43A LTR ERVK -2 362 195 2 1512 213 302 0 19 chr4 121512016 121512070 -34118050 + PB1D9 SINE Alu 32 84 -36 2 1512 1600 153 57 72 chr4 121512603 121512935 -34117185 + ORR1A2 LTR MaLR 1 327 0 2 1512 498 49 37 0 chr4 121513051 121513133 -34116987 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 2 1512 430 383 19 0 chr4 121513174 121513336 -34116784 - ID_B1 SINE B4 -49 175 11 2 1512 598 235 82 16 chr4 121513443 121513625 -34116495 + RMER19C LTR ERVK 1 194 -417 2 1512 3432 219 21 11 chr4 121513625 121514341 -34115779 + MurERV4_19-int LTR ERVK 312 1035 -4745 2 1512 849 191 0 6 chr4 121514341 121514515 -34115605 + Lx LINE L1 6475 6647 -7 2 1512 3432 219 21 11 chr4 121514515 121514560 -34115560 + MurERV4_19-int LTR ERVK 1036 1080 -4700 2 1512 235 253 238 83 chr4 121514621 121514802 -34115318 - B3 SINE B2 -7 209 1 2 1512 280 356 38 9 chr4 121514875 121514980 -34115140 - PB1D10 SINE Alu -7 110 3 2 1512 297 0 0 0 chr4 121515145 121515178 -34114942 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1512 495 0 0 0 chr4 121515178 121515232 -34114888 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1512 427 349 17 29 chr4 121515298 121515472 -34114648 - B3A SINE B2 -23 175 4 3 1512 22 35 0 0 chr4 121515474 121515503 -34114617 + AT_rich Low_complexity Low_complexity 1 29 0 3 1512 381 383 13 13 chr4 121515508 121515664 -34114456 - RSINE1 SINE B4 -6 159 4 3 1512 309 330 192 4 chr4 121515717 121515951 -34114169 - L2 LINE L2 -657 2762 2485 3 1512 290 286 26 0 chr4 121516339 121516416 -34113704 + RSINE1 SINE B4 81 159 -6 3 1512 568 302 0 8 chr4 121516523 121516653 -34113467 + ID_B1 SINE B4 76 204 -20 3 1512 481 246 55 0 chr4 121516750 121516860 -34113260 + B1_Mur2 SINE Alu 22 137 -12 3 1512 238 220 0 20 chr4 121516909 121516960 -34113160 + B3A SINE B2 2 51 -147 3 1512 218 365 10 0 chr4 121517605 121517709 -34112411 + CT-rich Low_complexity Low_complexity 1 105 0 4 1512 1672 136 27 14 chr4 121518633 121518925 -34111195 + L1_Mus3 LINE L1 6342 6637 -1 4 1512 331 201 141 0 chr4 121518951 121519057 -34111063 + B1_Mur2 SINE Alu 11 129 -21 4 1512 221 169 26 0 chr4 121519062 121519139 -34110981 + A-rich Low_complexity Low_complexity 4 82 0 4 1512 280 318 55 103 chr4 121519175 121519340 -34110780 + RSINE1 SINE B4 7 163 -2 4 1512 24 32 0 0 chr4 121519340 121519371 -34110749 + AT_rich Low_complexity Low_complexity 1 31 0 4 1512 1666 199 13 3 chr4 121519404 121519717 -34110403 - ORR1A2 LTR MaLR -7 320 5 4 1512 381 306 106 26 chr4 121519739 121519890 -34110230 + B3 SINE B2 54 216 0 3 1512 696 333 68 0 chr4 121519935 121520169 -34109951 + B4A SINE B4 2 251 -41 4 1512 3145 106 4 13 chr4 121520225 121520684 -34109436 + L1_Mus2 LINE L1 6112 6566 0 4 1512 256 348 104 0 chr4 121520717 121520832 -34109288 - ID_B1 SINE B4 -16 208 82 4 1512 593 245 14 7 chr4 121520854 121520994 -34109126 - B1_Mm SINE Alu -6 141 1 5 1512 420 265 10 0 chr4 121521755 121521857 -34108263 + B1_Mur1 SINE Alu 26 128 -21 5 1512 619 108 9 9 chr4 121521862 121521974 -34108146 + (GA)n Simple_repeat Simple_repeat 2 113 0 5 1512 261 222 0 0 chr4 121522878 121522941 -34107179 + L1_Mus4 LINE L1 5241 5303 -580 5 1512 1168 82 0 0 chr4 121522941 121523088 -34107032 + B1_Mus2 SINE Alu 1 147 0 5 1512 453 62 0 0 chr4 121523090 121523155 -34106965 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 5 1512 391 166 6 34 chr4 121523155 121523265 -34106855 + L1_Mur2 LINE L1 5271 5373 -513 5 1512 221 324 131 62 chr4 121523365 121523625 -34106495 + L2a LINE L2 2979 3256 -170 5 1512 400 222 89 0 chr4 121523656 121523783 -34106337 - RMER12 LTR ERVK -29 1293 1097 5 1512 654 136 84 0 chr4 121523838 121523975 -34106145 + L1_Mus4 LINE L1 5566 5712 -171 5 1512 180 111 0 0 chr4 121524601 121524628 -34105492 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 5 1512 231 125 0 0 chr4 121524656 121524696 -34105424 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1512 264 77 0 0 chr4 121524759 121524798 -34105322 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 6 1512 516 16 0 0 chr4 121524958 121525019 -34105101 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1512 236 191 0 0 chr4 121525065 121525107 -34105013 - RSINE1 SINE B4 -87 78 37 6 1512 314 266 63 0 chr4 121525255 121525334 -34104786 - ID_B1 SINE B4 -7 217 134 6 1512 32327 82 5 4 chr4 121525341 121531520 -34098600 - L1Md_F2 LINE L1 0 6582 392 6 1512 305 363 26 0 chr4 121531550 121531663 -34098457 - B1F SINE Alu -11 138 23 6 1512 19625 131 19 7 chr4 121531984 121536120 -34094000 + L1_Mus1 LINE L1 2384 6567 0 6 1512 521 341 44 6 chr4 121536134 121536317 -34093803 + B3 SINE B2 27 216 0 6 1512 271 356 0 0 chr4 121536359 121536449 -34093671 + PB1D10 SINE Alu 13 102 -15 6 1512 477 50 0 0 chr4 121536452 121536512 -34093608 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 7 1512 822 136 0 30 chr4 121536512 121536679 -34093441 + G-rich Low_complexity Low_complexity 2 163 0 7 1512 1131 215 98 3 chr4 121537169 121537454 -34092666 + L1_Mur2 LINE L1 5392 5703 -174 7 1512 1601 206 59 33 chr4 121537476 121537635 -34092485 + Lx4B LINE L1 6602 6768 -290 7 1512 339 25 0 0 chr4 121537635 121537675 -34092445 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1512 1601 206 59 33 chr4 121537675 121537941 -34092179 + Lx4B LINE L1 6769 7038 -20 7 1512 411 269 25 25 chr4 121538683 121538801 -34091319 - B3 SINE B2 -6 210 93 7 1512 217 328 17 0 chr4 121538790 121538848 -34091272 - BC1_Mm scRNA scRNA -75 77 19 7 1512 664 217 28 14 chr4 121538883 121539028 -34091092 - B1_Mur3 SINE Alu -2 147 1 7 1512 1117 82 0 0 chr4 121539687 121539834 -34090286 + B1_Mus1 SINE Alu 2 148 0 7 1512 21 0 0 0 chr4 121539834 121539855 -34090265 + AT_rich Low_complexity Low_complexity 1 21 0 7 1512 295 41 41 0 chr4 121539857 121539906 -34090214 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 8 1512 683 102 9 0 chr4 121540076 121540142 -34089978 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 1512 693 0 0 0 chr4 121540142 121540219 -34089901 + (GAA)n Simple_repeat Simple_repeat 3 79 0 8 1512 683 102 9 0 chr4 121540219 121540260 -34089860 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1512 1095 168 0 0 chr4 121540644 121540834 -34089286 - Lx2 LINE L1 -331 6666 6477 8 1512 3194 196 56 22 chr4 121540835 121541629 -34088491 + Lx2 LINE L1 5595 6424 -573 8 1512 4886 136 40 21 chr4 121541629 121542499 -34087621 + RMER17D LTR ERVK 1 887 -2 8 1512 3194 196 56 22 chr4 121542499 121542539 -34087581 + Lx2 LINE L1 6425 6458 -539 8 1512 4276 222 64 53 chr4 121543306 121544087 -34086033 + RMER12 LTR ERVK 1 786 -536 8 1512 372 22 0 0 chr4 121544087 121544132 -34085988 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1512 4276 222 64 53 chr4 121544132 121544547 -34085573 + RMER12 LTR ERVK 787 1210 -112 8 1512 244 332 217 24 chr4 121544599 121544852 -34085268 - L2a LINE L2 -170 3256 2955 8 1512 190 0 32 32 chr4 121545834 121545865 -34084255 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1512 426 146 0 0 chr4 121546026 121546122 -34083998 + (GA)n Simple_repeat Simple_repeat 1 96 0 9 1512 294 267 38 47 chr4 121546145 121546251 -34083869 + PB1D10 SINE Alu 13 117 0 9 1512 450 0 0 0 chr4 121546336 121546386 -34083734 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1512 216 271 16 63 chr4 121546560 121546623 -34083497 - ID_B1 SINE B4 -73 151 92 9 1512 240 322 35 0 chr4 121546637 121546724 -34083396 - ID_B1 SINE B4 -8 216 127 9 1512 339 85 0 0 chr4 121546739 121546786 -34083334 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 9 1512 967 103 7 52 chr4 121546786 121546940 -34083180 - B1_Mus1 SINE Alu -1 147 1 9 1512 503 277 34 47 chr4 121546960 121547108 -34083012 - B1F SINE Alu -1 148 3 9 1512 354 211 60 26 chr4 121547490 121547607 -34082513 - L2 LINE L2 -1217 2202 2082 9 1512 234 307 194 11 chr4 121547846 121548037 -34082083 - L2 LINE L2 -1369 2050 1825 9 1512 560 333 23 6 chr4 121548604 121548779 -34081341 - ID_B1 SINE B4 -46 178 1 9 1512 484 296 114 8 chr4 121548867 121549459 -34080661 - L1MB7 LINE L1 -30 6144 5503 1 1512 6582 122 2 1 chr4 121549493 121551135 -34078985 - L1_Mus1 LINE L1 0 6567 4923 1 1512 23564 103 9 16 chr4 121551135 121554934 -34075186 + L1Md_F2 LINE L1 1811 5584 -299 1 1512 7289 69 13 14 chr4 121554937 121555177 -34074943 + L1Md_F2 LINE L1 5588 5827 -755 1 1512 5761 92 82 7 chr4 121555177 121556041 -34074079 - RLTR13B3 LTR ERVK 0 929 1 1 1512 7289 69 13 14 chr4 121556041 121556781 -34073339 + L1Md_F2 LINE L1 5828 6567 -15 1 1512 6462 134 16 2 chr4 121556790 121557922 -34072198 - L1_Mus1 LINE L1 -945 4938 3791 1 1512 837 209 38 19 chr4 121557921 121558131 -34071989 - L1_Mus1 LINE L1 -6023 593 380 1 1512 200 273 0 0 chr4 121558212 121558267 -34071853 + (CATTT)n Simple_repeat Simple_repeat 1 55 0 1 1512 4508 197 77 58 chr4 121558329 121559412 -34070708 - RLTR25A LTR ERVK 0 1103 1 1 1512 1121 295 107 11 chr4 121559481 121559920 -34070200 + RCHARR1 DNA MER1_type 14 494 -480 1 1512 645 310 92 0 chr4 121559923 121560107 -34070013 + B3 SINE B2 1 201 -15 1 1512 670 290 30 17 chr4 121560111 121560346 -34069774 + RMER4B LTR ERVK 17 254 -331 1 1512 594 262 79 6 chr4 121560506 121560671 -34069449 + RMER4B LTR ERVK 263 439 -146 1 1512 431 140 40 70 chr4 121560657 121560757 -34069363 + RMER4B LTR ERVK 356 452 -14 1 1512 23 0 0 0 chr4 121560764 121560787 -34069333 + AT_rich Low_complexity Low_complexity 1 23 0 1 1512 320 250 86 18 chr4 121561042 121561152 -34068968 - B1F SINE Alu 0 127 10 1 1512 912 290 93 17 chr4 121561190 121561534 -34068586 - ORR1D2 LTR MaLR 0 370 1 1 1512 324 0 0 0 chr4 121561897 121561933 -34068187 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1512 342 273 0 0 chr4 121561954 121562031 -34068089 - B4A SINE B4 -4 288 212 1 1512 501 331 62 75 chr4 121562415 121562762 -34067358 - RLTR26 LTR ERVK -227 415 58 1 1512 307 357 58 31 chr4 121562832 121563023 -34067097 - B3A SINE B2 -1 197 2 1 1512 230 95 24 0 chr4 121563028 121563070 -34067050 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1 1512 23 33 0 0 chr4 121563220 121563250 -34066870 + AT_rich Low_complexity Low_complexity 1 30 0 1 1512 276 149 0 0 chr4 121563275 121563322 -34066798 + (ATG)n Simple_repeat Simple_repeat 2 48 0 1 1512 520 305 31 113 chr4 121563324 121563546 -34066574 - B4A SINE B4 -85 207 4 1 1512 851 117 39 7 chr4 121563599 121563754 -34066366 - L1_Mus3 LINE L1 -9 6629 6470 1 1512 369 248 41 82 chr4 121564035 121564206 -34065914 - RLTR43A LTR ERVK 0 364 201 1 1512 1733 149 61 13 chr4 121565378 121565690 -34064430 + ORR1A2 LTR MaLR 1 327 0 1 1512 451 0 34 0 chr4 121565805 121565864 -34064256 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1512 413 372 20 0 chr4 121565917 121566065 -34064055 - ID_B1 SINE B4 -61 163 13 1 1512 642 253 73 11 chr4 121566174 121566366 -34063754 + RMER19C LTR ERVK 1 194 -417 1 1512 4605 201 14 9 chr4 121566366 121567075 -34063045 + MurERV4_19-int LTR ERVK 322 1035 -4745 1 1512 757 211 0 12 chr4 121567075 121567248 -34062872 + Lx LINE L1 6475 6645 -9 1 1512 4605 201 14 9 chr4 121567248 121567450 -34062670 + MurERV4_19-int LTR ERVK 1036 1237 -4543 1 1512 1296 169 11 138 chr4 121567446 121567816 -34062304 + MurERV4_19-int LTR ERVK 1624 1946 -3834 1 1512 2893 25 2 96 chr4 121567818 121568223 -34061897 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1512 953 86 159 0 chr4 121568223 121568386 -34061734 + IAPEz-int LTR ERVK 8 196 -6285 1 1512 5328 73 101 18 chr4 121568357 121569255 -34060865 + IAPEz-int LTR ERVK 67 983 -5498 1 1512 26244 17 1 2 chr4 121569239 121572341 -34057779 + IAPEz-int LTR ERVK 3384 6481 0 1 1512 2893 25 2 96 chr4 121572341 121572746 -34057374 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1512 9376 170 27 18 chr4 121572746 121573440 -34056680 + MurERV4_19-int LTR ERVK 1942 2620 -3160 1 1512 6360 80 21 12 chr4 121573440 121574337 -34055783 + L1Md_F2 LINE L1 5678 6582 0 1 1512 9376 170 27 18 chr4 121574337 121575597 -34054523 + MurERV4_19-int LTR ERVK 2621 3915 -1865 1 1512 1944 133 12 0 chr4 121575601 121575939 -34054181 + MurERV4_19-int LTR ERVK 4799 5140 -640 1 1512 17789 140 4 3 chr4 121575945 121579051 -34051069 + L1_Mm LINE L1 2376 5486 -397 1 1512 4975 96 3 12 chr4 121579051 121579769 -34050351 + L1Md_F2 LINE L1 5862 6572 -10 1 1512 17990 99 25 9 chr4 121579771 121582658 -34047462 - L1_Mm LINE L1 -949 4934 2001 1 1512 4103 112 2 3 chr4 121582662 121583263 -34046857 + L1_Mus1 LINE L1 5968 6567 0 1 1512 569 266 119 5 chr4 121583621 121583814 -34046306 - B3 SINE B2 0 216 2 1 1512 353 224 28 84 chr4 121583816 121583923 -34046197 - PB1D9 SINE Alu -1 119 19 1 1512 6684 53 5 0 chr4 121583959 121584787 -34045333 - L1Md_F2 LINE L1 -12 6570 5739 1 1512 509 310 34 14 chr4 121584790 121584937 -34045183 + B3A SINE B2 1 150 -48 1 1512 428 344 49 43 chr4 121585023 121585187 -34044933 - B3A SINE B2 -7 191 27 1 1512 289 268 9 71 chr4 121585207 121585317 -34044803 - B1_Mur4 SINE Alu -21 129 35 1 1512 1298 93 0 5 chr4 121585406 121585600 -34044520 - L1_Mus2 LINE L1 0 6566 6374 1 1512 7204 47 30 5 chr4 121585666 121587034 -34043086 - L1Md_F2 LINE L1 -3 6579 5183 1 1512 685 176 12 0 chr4 121587050 121587215 -34042905 + L1_Mur2 LINE L1 3259 3425 -2461 1 1512 6443 79 3 2 chr4 121587213 121588116 -34042004 + L1_Mus1 LINE L1 5658 6561 -6 1 1512 1905 163 49 15 chr4 121588132 121588381 -34041739 + L1_Mur2 LINE L1 3402 3658 -2219 1 1512 1130 60 0 7 chr4 121588381 121588533 -34041587 + (GGGAGA)n Simple_repeat Simple_repeat 1 151 0 1 1512 1905 163 49 15 chr4 121588533 121588688 -34041432 + L1_Mur2 LINE L1 3659 3820 -2057 1 1512 302 317 99 8 chr4 121588717 121588838 -34041282 - L1M2 LINE L1 -820 5323 5192 1 1512 850 291 122 8 chr4 121588847 121589207 -34040913 + RCHARR1 DNA MER1_type 3 403 -571 1 1512 610 298 83 0 chr4 121589264 121589445 -34040675 + B3 SINE B2 2 197 -19 1 1512 1169 269 58 91 chr4 121589445 121589927 -34040193 + RMER4A LTR ERVK 1 466 0 1 1512 335 244 80 1 chr4 121590219 121590317 -34039803 - B1F1 SINE Alu -8 112 8 1 1512 1110 253 98 15 chr4 121590353 121590690 -34039430 - ORR1D2 LTR MaLR 0 370 6 1 1512 369 102 0 0 chr4 121591054 121591113 -34039007 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1512 212 344 0 0 chr4 121591119 121591180 -34038940 - RSINE1 SINE B4 -31 134 74 1 1512 611 337 17 17 chr4 121591171 121591346 -34038774 - B3A SINE B2 -22 176 2 1 1512 240 59 0 0 chr4 121591357 121591391 -34038729 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1512 233 267 27 0 chr4 121591423 121591498 -34038622 - B1_Mur3 SINE Alu 0 149 73 1 1512 617 144 20 7 chr4 121591540 121591687 -34038433 + (TA)n Simple_repeat Simple_repeat 1 149 0 1 1512 388 138 0 0 chr4 121591687 121591745 -34038375 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1512 354 98 0 0 chr4 121591797 121591848 -34038272 + (ATG)n Simple_repeat Simple_repeat 3 53 0 1 1512 253 245 19 0 chr4 121592020 121592073 -34038047 - B4A SINE B4 -227 65 12 1 1512 403 274 29 110 chr4 121592326 121592535 -34037585 - B3 SINE B2 -3 192 1 1 1512 315 230 24 81 chr4 121592596 121592719 -34037401 - PB1D7 SINE Alu 0 120 5 1 1512 724 78 15 15 chr4 121592959 121593089 -34037031 + (CAGAGA)n Simple_repeat Simple_repeat 3 132 0 1 1512 444 347 27 0 chr4 121593111 121593258 -34036862 - B3A SINE B2 -46 152 2 1 1512 205 167 0 0 chr4 121593274 121593310 -34036810 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1 1512 329 406 31 6 chr4 121593310 121593471 -34036649 - RSINE1 SINE B4 0 165 1 1 1512 271 332 146 68 chr4 121593509 121593920 -34036200 - L2 LINE L2 -654 2765 2323 1 1512 451 308 35 14 chr4 121594043 121594188 -34035932 + RSINE1 SINE B4 12 159 -6 1 1512 317 367 33 8 chr4 121594296 121594417 -34035703 + B1F SINE Alu 1 124 -25 1 1512 364 292 24 24 chr4 121594316 121594439 -34035681 + ID_B1 SINE B4 102 224 0 1 1512 266 299 29 93 chr4 121594500 121594539 -34035581 + MT2B LTR ERVL 127 156 -445 1 1512 494 344 8 0 chr4 121594539 121594670 -34035450 + B1_Mus2 SINE Alu 1 132 -15 1 1512 372 105 23 23 chr4 121595874 121595962 -34034158 + Lx LINE L1 6567 6654 0 1 1512 2544 184 47 33 chr4 121595973 121596523 -34033597 + L1VL4 LINE L1 214 771 -5531 1 1512 1949 17 0 0 chr4 121596515 121596748 -34033372 - L1Md_A LINE L1 -675 5907 5675 1 1512 5626 16 0 3 chr4 121596748 121597390 -34032730 + L1Md_A LINE L1 5943 6582 0 1 1512 1342 91 0 10 chr4 121597424 121597624 -34032496 + L1Md_F2 LINE L1 6373 6570 -12 1 1512 1780 160 29 23 chr4 121597657 121598003 -34032117 + Lx LINE L1 6305 6652 -2 1 1512 2636 177 9 25 chr4 121598021 121598582 -34031538 - L1_Mur2 LINE L1 -1706 4171 3620 1 1512 1255 58 6 0 chr4 121598577 121598751 -34031369 - L1_Mus2 LINE L1 -618 5948 5774 1 1512 4046 103 6 35 chr4 121598753 121599375 -34030745 + L1_Mus2 LINE L1 5961 6564 -2 1 1512 246 298 155 52 chr4 121599757 121600047 -34030073 - L2 LINE L2 -624 2795 2476 1 1512 261 0 0 0 chr4 121600053 121600082 -34030038 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1512 531 0 0 0 chr4 121600084 121600143 -34029977 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1512 789 56 0 0 chr4 121600366 121600473 -34029647 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 1512 457 281 8 16 chr4 121600474 121600597 -34029523 - RSINE1 SINE B4 -32 133 12 1 1512 484 229 65 8 chr4 121600709 121600832 -34029288 - B3 SINE B2 -86 130 1 1 1512 347 264 159 8 chr4 121600832 121600937 -34029183 - ID_B1 SINE B4 -31 193 70 1 1512 296 246 0 0 chr4 121600944 121601005 -34029115 - ID_B1 SINE B4 -6 218 158 1 1512 468 299 36 14 chr4 121601050 121601189 -34028931 - B1F SINE Alu -2 147 6 1 1512 214 322 55 11 chr4 121601302 121601393 -34028727 - PB1D10 SINE Alu -7 110 16 1 1512 299 271 8 56 chr4 121601663 121601788 -34028332 + MuRRS-int LTR ERV1 4572 4690 0 1 1512 3229 142 27 14 chr4 121601788 121602345 -34027775 + LTRIS2 LTR ERV1 1 564 0 1 1512 1258 174 75 0 chr4 121602347 121602629 -34027491 - MurERV4_19-int LTR ERVK -5475 305 3 1 1512 1368 245 12 119 chr4 121602631 121603061 -34027059 - RMER19C LTR ERVK 0 611 228 1 1512 283 305 116 0 chr4 121603196 121603291 -34026829 - Charlie4z DNA MER1_type -60 107 2 1 1512 306 227 13 51 chr4 121603775 121603854 -34026266 + ID4_ SINE ID 4 79 -4 1 1512 282 29 0 0 chr4 121603888 121603923 -34026197 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 1512 247 283 0 0 chr4 121604328 121604381 -34025739 - B1_Mur4 SINE Alu -65 85 33 1 1512 6389 111 10 36 chr4 121604454 121605320 -34024800 - L1_Mus3 LINE L1 -2 6636 5798 1 1512 1002 102 0 7 chr4 121605320 121605458 -34024662 - B1_Mus2 SINE Alu -10 137 1 1 1512 6389 111 10 36 chr4 121605458 121605668 -34024452 - L1_Mus3 LINE L1 -841 5797 5588 1 1512 249 316 170 35 chr4 121605888 121606170 -34023950 + L2a LINE L2 3031 3350 -76 1 1512 259 327 8 34 chr4 121607261 121607378 -34022742 + CT-rich Low_complexity Low_complexity 2 115 0 1 1512 307 333 10 0 chr4 121607388 121607490 -34022630 - B1F SINE Alu -23 126 24 1 1512 311 189 12 108 chr4 121608205 121608288 -34021832 + B1_Mur4 SINE Alu 42 146 -4 2 1512 237 305 38 9 chr4 121608317 121608423 -34021697 + B1F SINE Alu 5 113 -36 2 1512 651 336 102 9 chr4 121608438 121608663 -34021457 - B4A SINE B4 -39 253 8 2 1512 357 346 130 32 chr4 121608720 121608905 -34021215 - B3 SINE B2 -5 211 9 2 1512 513 44 0 0 chr4 121609002 121609070 -34021050 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1512 377 324 0 0 chr4 121609070 121609178 -34020942 - RSINE1 SINE B4 -44 121 14 2 1512 753 51 0 0 chr4 121609194 121609292 -34020828 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 2 1512 590 122 0 10 chr4 121609292 121609391 -34020729 + (TCC)n Simple_repeat Simple_repeat 1 98 0 2 1512 230 140 35 0 chr4 121609407 121609464 -34020656 + T-rich Low_complexity Low_complexity 6 64 0 2 1512 567 239 54 0 chr4 121609469 121609599 -34020521 - B1_Mur3 SINE Alu -1 148 12 2 1512 412 331 3 1 chr4 121610880 121611010 -34019110 - B1_Mus1 SINE Alu -11 138 7 2 1512 426 319 50 0 chr4 121611094 121611235 -34018885 - ID_B1 SINE B4 -1 223 76 2 1512 233 236 36 0 chr4 121611910 121611965 -34018155 - RSINE1 SINE B4 -28 137 81 2 1512 252 336 26 17 chr4 121612332 121612447 -34017673 + L2 LINE L2 2485 2600 -819 2 1512 264 30 0 0 chr4 121612563 121612596 -34017524 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1512 554 211 72 21 chr4 121612961 121613223 -34016897 + ORR1D2 LTR MaLR 1 360 -10 2 1512 421 243 46 18 chr4 121613267 121613376 -34016744 + PB1D10 SINE Alu 6 117 0 2 1512 24 0 0 0 chr4 121613633 121613657 -34016463 + AT_rich Low_complexity Low_complexity 1 24 0 2 1512 857 295 85 97 chr4 121613662 121614206 -34015914 - RMER4B LTR ERVK 0 585 49 2 1512 2271 226 86 38 chr4 121614182 121614651 -34015469 + RLTR25B LTR ERVK 311 791 -237 2 1512 1724 202 54 149 chr4 121614651 121615173 -34014947 + RMER16 LTR ERVK 1 478 -55 2 1512 1181 75 0 0 chr4 121615173 121615319 -34014801 - B1_Mus2 SINE Alu 0 147 2 2 1512 1724 202 54 149 chr4 121615319 121615385 -34014735 + RMER16 LTR ERVK 479 533 0 2 1512 2271 226 86 38 chr4 121615385 121615600 -34014520 + RLTR25B LTR ERVK 792 1027 -1 2 1512 4294 80 41 0 chr4 121615704 121616268 -34013852 + LTRIS_Mus LTR ERV1 1 587 0 2 1512 453 298 84 21 chr4 121616585 121616965 -34013155 + L1MB5 LINE L1 5762 6165 -9 2 1512 505 349 40 6 chr4 121617039 121617215 -34012905 + ID_B1 SINE B4 3 184 -40 2 1512 267 328 0 0 chr4 121617233 121617297 -34012823 + B1F SINE Alu 1 64 -85 2 1512 202 128 0 25 chr4 121618016 121618056 -34012064 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2 1512 2713 72 21 13 chr4 121618065 121618444 -34011676 + LTRIS_Mus LTR ERV1 1 382 -205 2 1512 380 278 8 94 chr4 121618443 121618570 -34011550 - RMER19C LTR ERVK -276 335 220 2 1512 4081 82 1 109 chr4 121618662 121619320 -34010800 + LTRIS_Mus LTR ERV1 1 587 0 2 1512 229 295 43 43 chr4 121619455 121619572 -34010548 + L2a LINE L2 2083 2199 -1220 2 1512 2414 131 75 12 chr4 121619627 121620116 -34010004 - LTRIS3 LTR ERV1 0 512 16 2 1512 441 0 0 0 chr4 121620117 121620166 -34009954 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1512 472 295 30 44 chr4 121620515 121620650 -34009470 + B1F SINE Alu 12 144 -5 2 1512 237 311 54 22 chr4 121620671 121620763 -34009357 + ID_B1 SINE B4 124 218 -6 2 1512 285 326 23 0 chr4 121620752 121620838 -34009282 + ID_B1 SINE B4 64 151 -73 2 1512 236 275 242 0 chr4 121620775 121620866 -34009254 + B1F2 SINE Alu 6 118 -31 2 1512 357 326 0 0 chr4 121620908 121621003 -34009117 + RSINE1 SINE B4 37 131 -34 2 1512 387 0 0 0 chr4 121621012 121621055 -34009065 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1512 272 252 18 55 chr4 121621134 121621243 -34008877 - PB1D10 SINE Alu 0 117 13 2 1512 774 41 0 0 chr4 121621275 121621373 -34008747 + (TC)n Simple_repeat Simple_repeat 2 99 0 2 1512 232 211 26 0 chr4 121621392 121621468 -34008652 + CT-rich Low_complexity Low_complexity 1 78 0 2 1512 207 0 0 0 chr4 121621554 121621577 -34008543 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1512 542 255 0 19 chr4 121622337 121622445 -34007675 - B1F2 SINE Alu -19 130 25 2 1512 261 298 203 56 chr4 121622528 121622869 -34007251 + L2a LINE L2 2855 3256 -170 2 1512 496 212 119 12 chr4 121622871 121623044 -34007076 - RMER12 LTR ERVK 0 1322 1074 2 1512 321 263 118 8 chr4 121623061 121623090 -34007030 - RMER12 LTR ERVK -155 1249 1216 2 1512 279 0 0 0 chr4 121623090 121623121 -34006999 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1512 3955 175 42 5 chr4 121623121 121623624 -34006496 - RMER12 LTR ERVK -538 784 255 2 1512 564 15 0 0 chr4 121623624 121623689 -34006431 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1512 3955 175 42 5 chr4 121623689 121623939 -34006181 - RMER12 LTR ERVK -1068 254 2 2 1512 216 229 31 62 chr4 121624663 121624728 -34005392 - MIRc SINE MIR -106 162 100 2 1512 594 0 0 0 chr4 121625703 121625769 -34004351 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1512 567 271 21 0 chr4 121626041 121626181 -34003939 + B1_Mus2 SINE Alu 5 147 0 2 1512 249 219 15 59 chr4 121626209 121626228 -34003892 + tRNA-Ala-GCY_ tRNA tRNA 5 66 -6 2 1512 291 174 0 0 chr4 121626228 121626274 -34003846 + ID4_ SINE ID 26 71 -12 2 1512 350 287 49 8 chr4 121626265 121626388 -34003732 + B3 SINE B2 89 216 0 2 1512 6123 60 29 18 chr4 121626464 121627263 -34002857 - RLTR13C2 LTR ERVK 0 808 1 2 1512 948 95 0 0 chr4 121627668 121627805 -34002315 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 2 1512 23 55 0 18 chr4 121627914 121627925 -34002195 + AT_rich Low_complexity Low_complexity 1 11 0 2 1512 380 303 102 10 chr4 121627925 121628122 -34001998 - B3 SINE B2 0 216 2 2 1512 23 55 0 18 chr4 121628122 121628165 -34001955 + AT_rich Low_complexity Low_complexity 1 43 0 2 1512 431 367 76 0 chr4 121628176 121628334 -34001786 - B3A SINE B2 -27 171 2 2 1512 27 49 0 0 chr4 121628334 121628375 -34001745 + AT_rich Low_complexity Low_complexity 1 41 0 2 1512 350 282 41 11 chr4 121628562 121628681 -34001439 - PB1D9 SINE Alu -31 118 2 2 1512 241 391 52 8 chr4 121628760 121628894 -34001226 + B1F SINE Alu 4 143 -6 2 1512 478 238 151 75 chr4 121628913 121629072 -34001048 + B3 SINE B2 5 175 -20 2 1512 446 180 10 0 chr4 121629076 121629176 -34000944 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2 1512 624 321 50 14 chr4 121629189 121629470 -34000650 + B4 SINE B4 2 292 0 2 1512 561 290 104 0 chr4 121629573 121629756 -34000364 - B3 SINE B2 -13 203 2 2 1512 2836 87 2 17 chr4 121630008 121630428 -33999692 - BGLII LTR ERVK -7 414 1 2 1512 2798 219 40 47 chr4 121630429 121631352 -33998768 - RMER3D-int LTR ERVK -1 2841 1925 2 1512 451 245 34 27 chr4 121631371 121631518 -33998602 - RMER3D-int LTR ERVK -1163 1679 1532 2 1512 1725 193 18 12 chr4 121631550 121632041 -33998079 - RMER3D-int LTR ERVK -1309 1533 1015 2 1512 411 128 80 20 chr4 121632067 121632218 -33997902 + CT-rich Low_complexity Low_complexity 1 160 0 2 1512 694 194 60 17 chr4 121632218 121632530 -33997590 - RMER3D-int LTR ERVK -2005 837 359 2 1512 539 94 0 0 chr4 121632546 121632633 -33997487 - RMER3D-int LTR ERVK -2278 564 489 2 1512 2868 77 7 28 chr4 121633040 121633253 -33996867 - BGLII LTR ERVK 0 421 217 2 1512 3485 82 95 23 chr4 121633253 121633779 -33996341 + LTRIS2 LTR ERV1 1 564 0 2 1512 2868 77 7 28 chr4 121633779 121633995 -33996125 - BGLII LTR ERVK -205 216 1 2 1512 725 245 75 0 chr4 121634588 121634800 -33995320 - RLTR19-int LTR ERVK -1756 4381 4154 2 23 390 302 30 42 chr4 121634802 121634968 -33995152 - RNLTR23 LTR ERVK 0 642 479 2 1513 730 243 19 23 chr4 121635257 121635472 -33994648 - RLTR19-int LTR ERVK -1977 4160 3947 2 1513 458 248 0 10 chr4 121635625 121635727 -33994393 + LSU-rRNA_Hsa rRNA rRNA 4202 4302 -733 2 1513 366 157 104 130 chr4 121635762 121635916 -33994204 - RLTR19-int LTR ERVK -2460 3677 3528 2 1513 2523 229 23 39 chr4 121636025 121636753 -33993367 + MYSERV6-int LTR ERVK 8241 8957 -2 2 1513 1079 247 49 21 chr4 121636760 121637087 -33993033 + RLTR15 LTR ERVK 6 341 -18 2 1513 272 246 29 0 chr4 121637177 121637246 -33992874 - RLTR15 LTR ERVK -108 251 181 2 1513 477 282 27 71 chr4 121637647 121637872 -33992248 - B3 SINE B2 0 216 2 2 1513 256 274 14 14 chr4 121637923 121637997 -33992123 + B1_Mur1 SINE Alu 75 148 -1 2 1513 693 290 40 0 chr4 121638004 121638180 -33991940 + B3 SINE B2 28 210 -6 2 1513 292 254 94 71 chr4 121638384 121638596 -33991524 + L1MD LINE L1 5539 5755 -487 2 1513 564 308 93 33 chr4 121638565 121639049 -33991071 + L1MB5 LINE L1 5653 6165 -9 2 1513 392 383 30 0 chr4 121639085 121639252 -33990868 + ID_B1 SINE B4 7 178 -46 2 1513 210 344 82 10 chr4 121639168 121639265 -33990855 + PB1D10 SINE Alu 14 117 0 2 1513 1513 171 87 0 chr4 121639354 121639653 -33990467 + ORR1A2 LTR MaLR 1 325 -2 2 1513 202 283 0 0 chr4 121640190 121640250 -33989870 + A-rich Low_complexity Low_complexity 1 60 0 2 1513 7660 56 2 1 chr4 121640760 121642275 -33987845 - L1Md_F2 LINE L1 -1 6581 5066 2 1513 20962 154 51 19 chr4 121642275 121642761 -33987359 - L1_Mur1 LINE L1 -128 5758 5269 2 1513 321 26 0 0 chr4 121642761 121642799 -33987321 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 1513 20962 160 65 21 chr4 121642799 121647604 -33982516 - L1_Mur1 LINE L1 -618 5268 3 2 1513 2838 107 23 11 chr4 121647617 121648051 -33982069 - L1_Mus3 LINE L1 -12 6626 6188 2 1513 378 327 130 10 chr4 121648219 121648426 -33981694 + L2a LINE L2 3028 3259 -167 2 1513 223 82 39 39 chr4 121649166 121649217 -33980903 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 2 1513 352 267 107 41 chr4 121649217 121649338 -33980782 - B1_Mur2 SINE Alu -20 129 1 2 1513 579 264 14 14 chr4 121649818 121649964 -33980156 + B1_Mus1 SINE Alu 1 146 -2 2 1513 945 278 10 68 chr4 121650390 121650825 -33979295 - RLTR11B LTR ERVK -17 424 1 2 1513 506 308 0 0 chr4 121652194 121652311 -33977809 - B1_Mus1 SINE Alu -19 129 13 2 1513 338 296 33 112 chr4 121652371 121652523 -33977597 - B1_Mur3 SINE Alu -7 142 3 2 1513 385 289 135 0 chr4 121652422 121652526 -33977594 - ID_B1 SINE B4 -26 198 81 2 1513 413 296 60 27 chr4 121652618 121652767 -33977353 - RSINE1 SINE B4 -6 159 6 2 1513 341 324 165 4 chr4 121653076 121653318 -33976802 + L2 LINE L2 2485 2765 -654 3 1513 456 390 0 0 chr4 121653357 121653516 -33976604 + RSINE1 SINE B4 3 161 -4 3 1513 475 296 16 0 chr4 121653561 121653686 -33976434 + B3A SINE B2 50 176 -22 3 1513 3028 157 65 15 chr4 121653966 121654502 -33975618 - RMER2 LTR ERV1 -4 563 1 3 1513 426 254 43 87 chr4 121654651 121654789 -33975331 + B3 SINE B2 1 132 -84 3 1513 503 337 9 60 chr4 121655110 121655328 -33974792 + B4A SINE B4 1 207 -85 3 1513 596 333 13 3 chr4 121655411 121655619 -33974501 + B3A SINE B2 5 213 -3 3 1513 831 268 139 13 chr4 121656132 121656442 -33973678 + ORR1E LTR MaLR 7 355 -4 3 1513 464 266 18 35 chr4 121656482 121656595 -33973525 + PB1D10 SINE Alu 7 117 0 3 1513 258 267 133 0 chr4 121657047 121657152 -33972968 - RCHARR1 DNA MER1_type -469 505 387 3 1513 5795 114 46 1 chr4 121657175 121658114 -33972006 - L1_Mus3 LINE L1 -1 6637 5657 3 1513 4458 119 22 0 chr4 121658244 121658916 -33971204 + L1_Mus1 LINE L1 5880 6566 -1 3 1513 39480 5 0 0 chr4 121658985 121665561 -33964559 - L1Md_A LINE L1 0 6582 7 3 1513 216 303 115 73 chr4 121665744 121665840 -33964280 - PB1D10 SINE Alu -17 100 1 3 1513 221 342 150 20 chr4 121665843 121666043 -33964077 + L2a LINE L2 2091 2316 -1103 3 1513 320 318 54 22 chr4 121666145 121666281 -33963839 + PB1D10 SINE Alu 1 149 0 3 1513 538 244 36 60 chr4 121666344 121666379 -33963741 + ID_B1 SINE B4 63 224 0 3 1513 670 225 0 15 chr4 121666379 121666510 -33963610 + B1F1 SINE Alu 19 147 -2 3 1513 505 320 39 0 chr4 121666756 121666884 -33963236 + RSINE1 SINE B4 20 152 -13 3 1513 230 320 165 54 chr4 121666894 121667155 -33962965 + L2a LINE L2 2504 2793 -626 3 1513 522 234 18 18 chr4 121667668 121667777 -33962343 - B1F2 SINE Alu -16 133 25 3 1513 252 325 165 13 chr4 121667986 121668223 -33961897 + L2a LINE L2 3032 3304 -122 3 1513 453 19 0 0 chr4 121669498 121669552 -33960568 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1513 1280 184 0 0 chr4 121669582 121669843 -33960277 + L1_Mur2 LINE L1 2065 2325 -3552 3 1513 249 246 33 0 chr4 121670145 121670206 -33959914 + B2_Mm2 SINE B2 9 71 -124 3 1513 3543 58 51 0 chr4 121670270 121670722 -33959398 + MT2C_Mm LTR ERVL 1 475 0 3 1513 1516 166 93 0 chr4 121671290 121671580 -33958540 + IAPEY3_LTR LTR ERVK 16 332 0 3 1513 2456 53 3 45 chr4 121671596 121671932 -33958188 + RLTRETN_Mm LTR ERVK 1 322 0 3 1513 2223 49 0 0 chr4 121671932 121672217 -33957903 + MMETn-int LTR ERVK 1 285 -4559 3 1513 34429 38 2 8 chr4 121672218 121677587 -33952533 + L1Md_T LINE L1 254 5586 -297 3 1513 8221 40 2 0 chr4 121677587 121678579 -33951541 + L1Md_T LINE L1 5587 6580 -2 3 1513 34695 47 6 10 chr4 121678579 121683164 -33946956 + MMETn-int LTR ERVK 278 4844 0 3 1513 2500 44 3 45 chr4 121683164 121683500 -33946620 + RLTRETN_Mm LTR ERVK 1 322 0 3 1513 8652 51 7 2 chr4 121683500 121684622 -33945498 + IAPLTR4_I LTR ERVK 32 1159 -311 3 1513 315 129 195 23 chr4 121684597 121684684 -33945436 + MMERVK10C-int LTR ERVK 851 952 -6629 3 1513 1242 199 109 55 chr4 121684796 121685287 -33944833 + ETnERV2-int LTR ERVK 251 668 -5469 3 1513 410 186 93 0 chr4 121685287 121685405 -33944715 + ETnERV2-int LTR ERVK 1721 1849 -5557 3 1513 282 241 0 67 chr4 121685418 121685507 -33944613 + ETnERV2-int LTR ERVK 2457 2539 -4867 3 1513 584 219 0 0 chr4 121685519 121685638 -33944482 + ETnERV2-int LTR ERVK 2635 2753 -4653 3 1513 1913 142 107 3 chr4 121685664 121686253 -33943867 + ETnERV2-int LTR ERVK 3567 4271 -3135 3 1513 300 197 73 45 chr4 121686258 121686376 -33943744 + IAPEY3-int LTR ERVK 2357 2464 -2380 3 1513 794 76 17 8 chr4 121686391 121686510 -33943610 + IAPEY3-int LTR ERVK 4530 4649 -2932 3 1513 2624 104 0 28 chr4 121686784 121687181 -33942939 + IAPEY3-int LTR ERVK 5204 5589 -1992 3 1513 2867 97 0 2 chr4 121687181 121687585 -33942535 + IAPEY3-int LTR ERVK 5806 6208 -1373 3 1513 4407 78 47 1 chr4 121687587 121688478 -33941642 + IAPEY3-int LTR ERVK 6749 7680 0 3 1513 1558 166 78 0 chr4 121688486 121688782 -33941338 + IAPEY3_LTR LTR ERVK 14 332 0 3 1513 218 196 0 136 chr4 121689014 121689073 -33941047 - B3 SINE B2 -157 59 9 3 1513 447 360 15 0 chr4 121689110 121689246 -33940874 - B1_Mur2 SINE Alu -11 138 1 3 1513 180 111 67 0 chr4 121689344 121689389 -33940731 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1513 405 306 80 7 chr4 121689394 121689532 -33940588 - ID_B1 SINE B4 0 224 77 3 1513 2413 184 51 76 chr4 121689582 121690505 -33939615 + RMER17A LTR ERVK 1 887 -19 3 1513 392 272 237 27 chr4 121691026 121691283 -33938837 + L2 LINE L2 2503 2813 -606 3 1513 419 312 108 19 chr4 121691406 121691563 -33938557 + B3A SINE B2 2 172 -26 3 1513 319 322 8 42 chr4 121691800 121691920 -33938200 + PB1D10 SINE Alu 2 117 0 3 1513 282 360 72 8 chr4 121692032 121692174 -33937946 + B3 SINE B2 44 196 -2 3 1513 198 0 0 0 chr4 121692426 121692448 -33937672 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1513 355 320 34 119 chr4 121692467 121692644 -33937476 + B4A SINE B4 4 165 -127 3 1513 551 337 6 0 chr4 121692620 121692792 -33937328 + B3A SINE B2 5 177 -21 3 1513 441 0 0 0 chr4 121692796 121692845 -33937275 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1513 567 308 17 54 chr4 121693030 121693270 -33936850 + RLTR26 LTR ERVK 186 416 -226 3 1513 299 309 0 47 chr4 121693658 121693743 -33936377 + B4A SINE B4 212 292 0 3 1513 228 111 0 0 chr4 121693760 121693796 -33936324 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1513 1095 265 106 24 chr4 121694162 121694502 -33935618 + ORR1D2 LTR MaLR 1 368 -2 3 1513 244 340 18 28 chr4 121694537 121694646 -33935474 + PB1D10 SINE Alu 5 112 -5 3 1513 564 328 81 96 chr4 121694917 121695176 -33934944 - RMER4B LTR ERVK 0 585 317 3 1513 980 137 0 0 chr4 121695176 121695322 -33934798 - B1_Mus1 SINE Alu -1 147 2 3 1513 564 328 81 96 chr4 121695322 121695581 -33934539 - RMER4B LTR ERVK -269 316 75 3 1513 365 0 22 0 chr4 121695581 121695626 -33934494 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1513 369 0 0 0 chr4 121695626 121695666 -33934454 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1513 397 352 99 0 chr4 121695672 121695814 -33934306 - B3 SINE B2 -60 156 1 3 1513 11883 126 18 2 chr4 121695872 121698678 -33931442 + L1Md_F LINE L1 212 3063 -2820 3 1513 4768 112 42 3 chr4 121698674 121699454 -33930666 + L1Md_F LINE L1 4743 5553 -330 3 1513 870 281 129 25 chr4 121699454 121699489 -33930631 - RCHARR1 DNA MER1_type -484 490 457 3 1513 7007 93 4 2 chr4 121699489 121700462 -33929658 + L1Md_F2 LINE L1 5589 6563 -19 3 1513 870 281 129 25 chr4 121700462 121700867 -33929253 - RCHARR1 DNA MER1_type -518 456 5 3 1513 241 300 0 0 chr4 121700995 121701055 -33929065 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1513 414 217 10 42 chr4 121701093 121701189 -33928931 + B1_Mur2 SINE Alu 57 149 0 3 1513 356 55 0 18 chr4 121701189 121701245 -33928875 + (CAAAAA)n Simple_repeat Simple_repeat 6 60 0 3 1513 373 333 63 8 chr4 121701249 121701376 -33928744 + B3A SINE B2 28 161 -37 3 1513 589 335 11 16 chr4 121701465 121701650 -33928470 - B3 SINE B2 -30 186 3 3 1513 307 264 122 15 chr4 121701678 121701810 -33928310 + B1F2 SINE Alu 7 148 -1 3 1513 562 295 173 0 chr4 121701817 121701970 -33928150 + B3 SINE B2 3 182 -34 3 1513 1379 215 13 64 chr4 121701970 121702268 -33927852 + RLTR25A LTR ERVK 1 283 -820 3 1513 1666 216 16 72 chr4 121702265 121702694 -33927426 + RLTR25A LTR ERVK 699 1103 0 3 1513 607 307 98 15 chr4 121702885 121703497 -33926623 + L1MB5 LINE L1 5503 6165 -9 3 1513 455 369 28 11 chr4 121703569 121703750 -33926370 + ID_B1 SINE B4 1 184 -40 3 1513 231 366 20 10 chr4 121703660 121703762 -33926358 + PB1D10 SINE Alu 14 116 -1 3 1513 282 300 80 33 chr4 121703769 121703871 -33926249 + B1F1 SINE Alu 2 96 -53 3 1513 467 307 28 35 chr4 121704387 121704532 -33925588 + B1F SINE Alu 1 144 -5 3 1513 245 312 51 20 chr4 121704553 121704651 -33925469 + ID_B1 SINE B4 124 224 0 3 1513 273 281 16 0 chr4 121704657 121704721 -33925399 + PB1D10 SINE Alu 6 70 -47 3 1513 294 322 25 8 chr4 121704763 121704885 -33925235 + RSINE1 SINE B4 8 131 -34 3 1513 486 61 0 0 chr4 121704896 121704962 -33925158 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1513 186 208 0 0 chr4 121705181 121705234 -33924886 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 3 1513 246 237 8 17 chr4 121705224 121705344 -33924776 + CT-rich Low_complexity Low_complexity 3 121 0 3 1513 224 323 121 21 chr4 121705362 121705552 -33924568 + L2a LINE L2 2475 2683 -736 3 1513 485 286 0 19 chr4 121706168 121706275 -33923845 - B1F2 SINE Alu -20 129 25 3 1513 279 288 253 50 chr4 121706356 121706699 -33923421 + L2a LINE L2 2855 3259 -167 3 1513 353 217 217 0 chr4 121706724 121706844 -33923276 - RMER12 LTR ERVK -100 1222 1077 3 1513 858 83 0 0 chr4 121706904 121707037 -33923083 + (CA)n Simple_repeat Simple_repeat 2 134 0 3 1513 2438 154 26 7 chr4 121707037 121707480 -33922640 - RMER12 LTR ERVK -556 766 313 3 1513 31542 94 8 11 chr4 121707960 121714148 -33915972 - L1Md_F2 LINE L1 0 6582 413 3 1513 1705 202 25 23 chr4 121714149 121714554 -33915566 - Lx4B LINE L1 -77 6981 6577 3 1513 1493 175 50 0 chr4 121714551 121714848 -33915272 - L1_Mur2 LINE L1 -174 5703 5392 3 1513 732 23 0 0 chr4 121715229 121715315 -33914805 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 3 1513 241 359 11 21 chr4 121715315 121715409 -33914711 - PB1D10 SINE Alu -12 105 13 3 1513 458 324 19 14 chr4 121715434 121715647 -33914473 - B3 SINE B2 -1 215 2 3 1513 24 67 0 0 chr4 121715647 121715692 -33914428 + AT_rich Low_complexity Low_complexity 1 45 0 3 1513 223 284 46 114 chr4 121715738 121715869 -33914251 - B2_Mm2 SINE B2 -72 123 2 3 1513 372 133 0 0 chr4 121715880 121715940 -33914180 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 3 1513 359 250 23 0 chr4 121716159 121716247 -33913873 - B1_Mus1 SINE Alu -48 100 11 3 1513 236 333 76 15 chr4 121716335 121716466 -33913654 + B1F SINE Alu 4 142 -7 3 1513 496 267 112 0 chr4 121716484 121716600 -33913520 + B3 SINE B2 4 132 -84 3 1513 2779 67 3 0 chr4 121717194 121717539 -33912581 - ORR1A1 LTR MaLR 0 346 1 3 1513 1566 234 51 12 chr4 121717761 121718176 -33911944 - RLTR19-int LTR ERVK -1760 4377 3947 3 1513 430 294 0 31 chr4 121718316 121718446 -33911674 + LSU-rRNA_Hsa rRNA rRNA 4191 4316 -719 3 1513 374 214 75 115 chr4 121718449 121718623 -33911497 - RLTR19-int LTR ERVK -2443 3694 3528 3 1513 2187 240 23 45 chr4 121718764 121719471 -33910649 + MYSERV6-int LTR ERVK 8267 8957 -2 3 1513 10799 115 12 10 chr4 121719491 121722009 -33908111 + L1_Mus2 LINE L1 4040 6565 -1 3 1513 7388 195 22 1 chr4 121722017 121723484 -33906636 - L1_Mm LINE L1 -215 5668 4171 3 1513 600 112 10 0 chr4 121723484 121723582 -33906538 - Lx LINE L1 -12 6642 6544 3 1513 27 0 0 0 chr4 121723587 121723614 -33906506 + AT_rich Low_complexity Low_complexity 1 27 0 3 1513 567 175 0 0 chr4 121723811 121723931 -33906189 + (TAAA)n Simple_repeat Simple_repeat 1 120 0 3 1513 213 228 287 21 chr4 121723981 121724075 -33906045 - B1_Mur3 SINE Alu -21 128 10 4 1513 23 33 0 0 chr4 121724083 121724113 -33906007 + AT_rich Low_complexity Low_complexity 1 30 0 4 1513 426 39 0 0 chr4 121724138 121724190 -33905930 + (ATG)n Simple_repeat Simple_repeat 3 54 0 4 1513 251 326 66 150 chr4 121724194 121724421 -33905699 - B4A SINE B4 -82 210 3 4 1513 357 294 161 27 chr4 121724924 121725036 -33905084 - B1F1 SINE Alu -21 128 2 4 1513 498 315 36 0 chr4 121725274 121725439 -33904681 - B3A SINE B2 -26 172 2 4 1513 468 312 24 0 chr4 121725487 121725612 -33904508 - RSINE1 SINE B4 -18 147 20 4 1513 291 310 225 11 chr4 121725633 121725904 -33904216 - L2 LINE L2 -606 2813 2485 4 1513 226 379 34 14 chr4 121726207 121726354 -33903766 + RSINE1 SINE B4 6 155 -10 4 1513 517 301 49 0 chr4 121726459 121726602 -33903518 + ID_B1 SINE B4 75 224 0 4 1513 21985 18 0 0 chr4 121726742 121729241 -33900879 + L1Md_T LINE L1 3088 5586 -297 4 1513 8559 53 1 0 chr4 121729241 121730236 -33899884 + L1Md_T LINE L1 5587 6582 0 4 1513 827 114 7 7 chr4 121731328 121731469 -33898651 + MurERV4_19-int LTR ERVK 5640 5780 0 4 1513 1670 244 45 97 chr4 121731469 121731986 -33898134 + RMER19C LTR ERVK 1 490 -121 4 1513 221 211 33 66 chr4 121731959 121732020 -33898100 - B3 SINE B2 -97 119 61 4 1513 430 240 29 9 chr4 121732194 121732299 -33897821 + B3 SINE B2 1 107 -91 4 1513 297 172 100 33 chr4 121732472 121732562 -33897558 + Lx2 LINE L1 6900 6996 -1 4 1513 322 288 70 21 chr4 121732649 121732791 -33897329 + RCHARR1 DNA MER1_type 3 151 -823 4 1513 949 252 55 24 chr4 121732801 121733131 -33896989 - RLTR15 LTR ERVK -17 342 3 4 1513 360 299 43 28 chr4 121733161 121733302 -33896818 + RCHARR1 DNA MER1_type 185 327 -647 4 1513 219 217 0 0 chr4 121733303 121733363 -33896757 + CT-rich Low_complexity Low_complexity 1 60 0 4 1513 633 209 42 63 chr4 121733549 121733738 -33896382 - Lx4B LINE L1 -262 6796 6612 4 1513 5963 150 13 2 chr4 121733734 121734684 -33895436 - L1_Mus4 LINE L1 -1 6635 5676 4 1513 2640 236 51 22 chr4 121734740 121735381 -33894739 + Lx LINE L1 513 1105 -5514 4 1513 3668 75 46 0 chr4 121735381 121735835 -33894285 + MT2C_Mm LTR ERVL 1 475 0 4 1513 6014 153 30 2 chr4 121735835 121736727 -33893393 + Lx LINE L1 1106 2020 -3866 4 1513 423 0 0 0 chr4 121736727 121736774 -33893346 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 1513 6014 144 27 0 chr4 121736774 121737061 -33893059 + Lx LINE L1 2021 2312 -3574 4 1513 40576 26 1 6 chr4 121737057 121743262 -33886858 - L1Md_A LINE L1 -2 6580 408 4 1513 15209 148 10 15 chr4 121743257 121745876 -33884244 + Lx LINE L1 2298 4903 -983 4 1513 6612 126 35 7 chr4 121745953 121747002 -33883118 + Lx LINE L1 5554 6631 -26 4 1513 1050 71 0 0 chr4 121747006 121747146 -33882974 + (GAAAA)n Simple_repeat Simple_repeat 3 142 0 4 1513 711 95 0 0 chr4 121747146 121747250 -33882870 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 4 1513 236 341 15 53 chr4 121747413 121747546 -33882574 + RLTR26 LTR ERVK 187 314 -328 4 1513 4887 92 74 7 chr4 121747547 121748320 -33881800 + RLTR22_Mus LTR ERVK 1 825 -983 4 1513 339 300 67 80 chr4 121748604 121748829 -33881291 + RMER12 LTR ERVK 1101 1322 0 4 1513 1137 99 0 0 chr4 121749345 121749486 -33880634 + B1_Mm SINE Alu 1 141 -6 4 1513 1229 89 0 11 chr4 121749489 121749671 -33880449 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1513 402 21 0 0 chr4 121749786 121749833 -33880287 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1513 4516 148 21 19 chr4 121750466 121751163 -33878957 - ETnERV2-int LTR ERVK -214 7192 6494 4 1513 1334 297 8 8 chr4 121751261 121751644 -33878476 - RNERVK23-int LTR ERVK -463 7754 7372 4 1513 1355 167 178 17 chr4 121752498 121752857 -33877263 - RLTR45-int LTR ERVK -2157 5087 4671 4 1513 3099 83 0 2 chr4 121752844 121753252 -33876868 - ETnERV2-int LTR ERVK -1644 5762 5356 4 1513 10033 151 45 32 chr4 121753250 121755267 -33874853 - ETnERV2-int LTR ERVK -2727 4679 2935 4 1513 408 200 38 0 chr4 121755281 121755361 -33874759 - RLTR19-int LTR ERVK -5077 1060 978 4 1513 2458 56 46 0 chr4 121755366 121755689 -33874431 - ORR1A0 LTR MaLR -8 338 1 4 1513 262 163 0 0 chr4 121755690 121755733 -33874387 - RMER16-int LTR ERVK -4275 1131 1089 4 1513 1329 167 183 49 chr4 121755738 121756104 -33874016 - RMER16-int LTR ERVK -4587 819 405 4 1513 297 0 0 0 chr4 121757451 121757484 -33872636 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1513 225 0 0 0 chr4 121757536 121757561 -33872559 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1513 810 192 30 30 chr4 121757561 121757727 -33872393 - RMER16-int LTR ERVK -4990 416 251 4 1513 437 233 61 50 chr4 121757870 121758051 -33872069 - RLTR45-int LTR ERVK -6878 366 184 4 1513 584 222 51 0 chr4 121758632 121758749 -33871371 - ETnERV2-int LTR ERVK -214 7192 7070 4 1513 1020 130 0 0 chr4 121758797 121758951 -33871169 + L1_Mus2 LINE L1 6413 6566 0 4 1513 1072 273 92 12 chr4 121759051 121759388 -33870732 + ORR1D2 LTR MaLR 1 364 -6 4 1513 272 330 21 11 chr4 121759425 121759520 -33870600 + PB1D10 SINE Alu 5 100 -17 4 1513 25 0 0 0 chr4 121759792 121759817 -33870303 + AT_rich Low_complexity Low_complexity 1 25 0 4 1513 371 194 47 37 chr4 121759820 121759927 -33870193 - RMER4A LTR ERVK 0 466 359 4 1513 1032 268 71 28 chr4 121759920 121760273 -33869847 - RMER4B LTR ERVK -150 435 68 4 1513 2530 198 19 54 chr4 121760268 121760894 -33869226 + RLTR25B LTR ERVK 317 920 -108 4 1513 681 316 114 15 chr4 121761187 121761782 -33868338 + L1MB7 LINE L1 5513 6166 -18 4 1513 420 368 25 0 chr4 121761854 121762017 -33868103 + ID_B1 SINE B4 2 168 -56 4 1513 218 238 0 0 chr4 121762073 121762115 -33868005 + B1F SINE Alu 23 64 -85 4 1513 183 278 71 36 chr4 121763051 121763163 -33866957 + L2 LINE L2 2090 2205 -1214 4 1513 381 292 20 15 chr4 121763527 121763654 -33866466 + B1F1 SINE Alu 3 127 -22 4 1513 3394 53 2 2 chr4 121763658 121764052 -33866068 + MTA_Mm LTR MaLR 1 394 -2 4 1513 9598 43 4 0 chr4 121764054 121765146 -33864974 + MTA_Mm-int LTR MaLR 1 1096 -2 4 1513 3424 56 2 0 chr4 121765149 121765543 -33864577 + MTA_Mm LTR MaLR 2 396 0 4 1513 304 243 0 0 chr4 121765610 121765684 -33864436 + ID_B1 SINE B4 151 224 0 4 1513 275 322 11 22 chr4 121765667 121765685 -33864435 + ID SINE ID 64 80 -144 4 1513 241 296 192 10 chr4 121765685 121765784 -33864336 + B1_Mm SINE Alu 1 117 -30 4 1514 360 0 0 0 chr4 121765945 121765985 -33864135 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1514 560 282 28 107 chr4 121766026 121766240 -33863880 - RMER12 LTR ERVK -366 956 770 4 1514 348 24 0 0 chr4 121766240 121766281 -33863839 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1514 204 97 0 0 chr4 121766281 121766311 -33863809 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1514 1422 207 42 31 chr4 121766311 121766680 -33863440 - RMER12 LTR ERVK -995 327 1 4 1514 2197 177 142 12 chr4 121767466 121767952 -33862168 - Lx2 LINE L1 -539 6458 5910 4 1514 2834 148 33 37 chr4 121767952 121768436 -33861684 + RLTR45 LTR ERVK 1 482 0 4 1514 3542 102 28 35 chr4 121768446 121768992 -33861128 + RLTR45-int LTR ERVK 30 571 -6673 4 1514 1043 23 0 0 chr4 121769102 121769232 -33860888 + ORR1A0 LTR MaLR 1 130 -216 4 1514 540 30 0 0 chr4 121769228 121769295 -33860825 + ORR1A0 LTR MaLR 280 346 0 4 1514 1134 16 0 0 chr4 121769954 121770078 -33860042 + RLTR45-int LTR ERVK 569 692 -6552 4 1514 1895 61 0 0 chr4 121770424 121770654 -33859466 + RLTR45-int LTR ERVK 681 910 -6334 4 1514 1568 97 68 0 chr4 121770775 121771023 -33859097 + RLTR45-int LTR ERVK 913 1177 -6067 4 1514 3483 68 27 36 chr4 121771193 121771669 -33858451 + RLTR45-int LTR ERVK 1176 1647 -5597 4 1514 2449 205 13 20 chr4 121771866 121772542 -33857578 + RLTR45-int LTR ERVK 6331 6628 -616 4 1514 3890 64 0 8 chr4 121772541 121773013 -33857107 + RLTR45-int LTR ERVK 6777 7244 0 4 1514 2469 126 144 23 chr4 121773013 121773443 -33856677 + RLTR45 LTR ERVK 1 482 0 4 1514 2144 97 3 16 chr4 121773451 121773765 -33856355 - Lx2 LINE L1 -1085 5912 5603 4 1514 2729 170 44 12 chr4 121773765 121774266 -33855854 + Lx2 LINE L1 6476 6992 -5 4 1514 201 208 42 0 chr4 121774637 121774685 -33855435 + CT-rich Low_complexity Low_complexity 1 50 0 4 1514 366 91 0 0 chr4 121774703 121774758 -33855362 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1514 218 350 62 0 chr4 121774768 121774865 -33855255 - B1_Mur1 SINE Alu -21 128 26 4 1514 7073 139 45 38 chr4 121775396 121776700 -33853420 + RMER16-int LTR ERVK 2864 4176 -1230 4 1514 535 226 0 50 chr4 121776708 121776829 -33853291 + ETnERV2-int LTR ERVK 6097 6211 -1195 4 1514 326 211 43 22 chr4 121776979 121777071 -33853049 + ETnERV2-int LTR ERVK 6332 6425 -981 4 1514 334 216 27 0 chr4 121777276 121777350 -33852770 + ETnERV2-int LTR ERVK 7330 7405 -1 4 1514 2033 157 33 25 chr4 121777351 121777716 -33852404 + RLTR9A LTR ERVK 1 368 0 4 1514 333 234 0 0 chr4 121777764 121777828 -33852292 + ID4_ SINE ID 8 71 -12 4 1514 448 279 19 45 chr4 121777792 121777946 -33852174 + B3 SINE B2 67 216 0 4 1514 4637 212 3 30 chr4 121778074 121779020 -33851100 - MurERV4_19-int LTR ERVK -4556 1224 304 4 1514 1198 118 20 35 chr4 121779020 121779221 -33850899 + LTRIS2 LTR ERV1 1 198 -366 4 1514 2206 315 68 44 chr4 121779237 121780953 -33849167 - RNERVK23-int LTR ERVK -3766 4451 2696 4 1514 334 271 67 101 chr4 121781325 121781670 -33848450 - RNERVK23-int LTR ERVK -4232 1935 1603 4 1514 306 291 45 39 chr4 121783280 121783459 -33846661 - MurERV4_19-int LTR ERVK -6878 366 187 4 1514 4392 295 47 36 chr4 121784044 121786622 -33843498 + MuRRS4-int LTR ERV1 3358 7142 -414 4 1514 3877 32 2 0 chr4 121786622 121787054 -33843066 - L1Md_T LINE L1 -1 6581 6149 4 1514 933 308 9 9 chr4 121787054 121787369 -33842751 + MuRRS4-int LTR ERV1 4706 5020 -43 4 1514 3507 131 27 20 chr4 121787371 121787931 -33842189 + LTRIS2 LTR ERV1 1 564 0 4 1514 1452 149 75 0 chr4 121787933 121788201 -33841919 - MurERV4_19-int LTR ERVK -5475 305 18 4 1514 1611 228 20 190 chr4 121788211 121788865 -33841255 - RMER19C LTR ERVK -68 543 1 4 1514 314 317 0 92 chr4 121789127 121789152 -33840968 + ID_B1 SINE B4 70 122 -102 4 1514 359 274 0 0 chr4 121789152 121789214 -33840906 + B1F1 SINE Alu 1 62 -87 4 1514 314 317 0 92 chr4 121789214 121789227 -33840893 + ID_B1 SINE B4 123 155 -69 4 1514 1334 178 48 78 chr4 121789289 121789484 -33840636 - ORR1A2 LTR MaLR -2 325 127 4 1514 2860 73 8 0 chr4 121789484 121789839 -33840281 + L1Md_F2 LINE L1 6224 6581 -1 4 1514 1334 178 48 78 chr4 121789839 121789978 -33840142 - ORR1A2 LTR MaLR -201 126 2 4 1514 6642 102 32 50 chr4 121790636 121791518 -33838602 - L1_Mus3 LINE L1 -2 6636 5798 4 1514 1069 95 0 7 chr4 121791518 121791656 -33838464 - B1_Mm SINE Alu -10 137 1 4 1514 6642 102 32 50 chr4 121791656 121791842 -33838278 - L1_Mus3 LINE L1 -841 5797 5588 4 1514 228 143 0 0 chr4 121791843 121791885 -33838235 + L1VL2 LINE L1 946 987 -5348 4 1514 264 315 156 21 chr4 121792059 121792341 -33837779 + L2a LINE L2 3031 3350 -76 4 1514 300 310 8 34 chr4 121793435 121793552 -33836568 + CT-rich Low_complexity Low_complexity 2 115 0 4 1514 323 324 10 0 chr4 121793562 121793664 -33836456 - B1F SINE Alu -23 126 24 4 1514 5292 69 1 3 chr4 121793906 121794556 -33835564 - L1Md_F2 LINE L1 -2 6580 5932 4 1514 3983 32 5 0 chr4 121794581 121795013 -33835107 - RLTR10C LTR ERVK 0 436 3 4 1514 198 0 0 0 chr4 121795444 121795466 -33834654 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1514 322 211 14 0 chr4 121795492 121795563 -33834557 + B1_Mur4 SINE Alu 75 146 -4 4 1514 288 330 8 42 chr4 121795578 121795698 -33834422 + ID_B1 SINE B4 76 191 -33 4 1514 576 321 128 0 chr4 121795713 121795931 -33834189 - B4A SINE B4 -39 253 8 4 1514 348 333 132 32 chr4 121795985 121796174 -33833946 - B3 SINE B2 0 216 9 5 1514 369 0 0 0 chr4 121796255 121796296 -33833824 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1514 224 317 135 29 chr4 121796296 121796392 -33833728 - RSINE1 SINE B4 -44 121 14 5 1514 783 80 0 0 chr4 121796408 121796520 -33833600 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 5 1514 561 53 0 0 chr4 121796520 121796589 -33833531 + (TTC)n Simple_repeat Simple_repeat 1 69 0 5 1514 506 16 16 0 chr4 121796589 121796652 -33833468 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1514 263 219 27 0 chr4 121796658 121796731 -33833389 + T-rich Low_complexity Low_complexity 2 76 0 5 1514 514 261 17 0 chr4 121796731 121796850 -33833270 - B1_Mur3 SINE Alu -17 132 12 5 1514 416 324 2 0 chr4 121798129 121798265 -33831855 - B1_Mus1 SINE Alu -11 138 1 5 1514 422 307 64 0 chr4 121798353 121798493 -33831627 - ID_B1 SINE B4 -1 223 75 5 1514 239 325 127 8 chr4 121799171 121799289 -33830831 - RSINE1 SINE B4 -28 137 6 5 1514 249 333 33 16 chr4 121799592 121799714 -33830406 + L2 LINE L2 2485 2608 -811 5 1514 207 0 0 0 chr4 121799828 121799851 -33830269 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1514 549 195 417 16 chr4 121800215 121800472 -33829648 + ORR1D2 LTR MaLR 1 360 -10 5 1514 32368 72 2 44 chr4 121800510 121801534 -33828586 + L1Md_Gf LINE L1 687 1699 -4187 5 1514 267 246 15 15 chr4 121801534 121801600 -33828520 - B3 SINE B2 -135 81 16 5 1514 32368 72 2 44 chr4 121801600 121805529 -33824591 + L1Md_Gf LINE L1 1700 5589 -297 5 1514 8181 56 10 7 chr4 121805529 121806523 -33823597 + L1Md_F3 LINE L1 5587 6583 -1 5 1514 447 307 71 7 chr4 121806552 121806706 -33823414 - RMER4B LTR ERVK -108 477 314 5 1514 712 291 23 26 chr4 121806748 121807012 -33823108 - RMER4B LTR ERVK -128 338 67 5 1514 2293 227 94 51 chr4 121807003 121807476 -33822644 + RLTR25B LTR ERVK 311 792 -236 5 1514 2253 199 47 78 chr4 121807476 121807955 -33822165 + RMER16 LTR ERVK 1 468 -65 5 1514 366 23 0 0 chr4 121807955 121807998 -33822122 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1514 1141 104 0 0 chr4 121807998 121808142 -33821978 - B1_Mm SINE Alu -2 145 2 5 1514 2253 199 47 78 chr4 121808142 121808211 -33821909 + RMER16 LTR ERVK 469 532 -1 5 1514 2293 227 94 51 chr4 121808211 121808425 -33821695 + RLTR25B LTR ERVK 793 1028 0 5 1514 27 29 0 0 chr4 121808463 121808497 -33821623 + AT_rich Low_complexity Low_complexity 1 34 0 5 1514 4589 82 41 0 chr4 121808542 121809106 -33821014 + LTRIS_Mus LTR ERV1 1 587 0 5 1514 288 291 56 0 chr4 121809425 121809604 -33820516 + L1MB5 LINE L1 5762 5950 -224 5 1514 237 21 0 41 chr4 121809624 121809673 -33820447 + L1Md_F2 LINE L1 6535 6581 -1 5 1514 343 289 86 32 chr4 121809688 121809874 -33820246 + L1MB5 LINE L1 5970 6165 -9 5 1514 573 343 22 6 chr4 121809948 121810127 -33819993 + ID_B1 SINE B4 3 184 -40 5 1514 233 359 0 0 chr4 121810145 121810209 -33819911 + B1F SINE Alu 1 64 -85 5 1514 2855 71 3 13 chr4 121810965 121811351 -33818769 + LTRIS_Mus LTR ERV1 1 382 -205 5 1514 1000 239 12 207 chr4 121811350 121811766 -33818354 - RMER19C LTR ERVK -276 335 1 5 1514 371 265 16 0 chr4 121812054 121812138 -33817982 + B1F1 SINE Alu 1 89 -28 5 1514 1586 134 111 79 chr4 121812191 121812506 -33817614 - ORR1A2 LTR MaLR -2 325 1 5 1514 6124 140 7 69 chr4 121813162 121814069 -33816051 - L1_Mus4 LINE L1 0 6636 5797 5 1514 988 88 70 42 chr4 121814069 121814211 -33815909 - B1_Mus2 SINE Alu -1 146 1 5 1514 6124 140 7 69 chr4 121814211 121814420 -33815700 - L1_Mus4 LINE L1 -840 5796 5589 5 1514 5586 179 177 35 chr4 121814498 121816001 -33814119 + RLTR19-int LTR ERVK 4186 5903 -234 5 1514 2757 119 21 31 chr4 121816003 121816427 -33813693 + Lx LINE L1 6235 6654 0 5 1514 285 342 191 16 chr4 121817150 121817459 -33812661 - L2a LINE L2 -107 3319 2957 5 1514 358 330 0 20 chr4 121817621 121817720 -33812400 + B1F2 SINE Alu 25 121 -28 5 1514 255 61 0 0 chr4 121817936 121817969 -33812151 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1514 200 361 28 9 chr4 121818432 121818541 -33811579 - L2a LINE L2 -816 2603 2493 5 1514 450 36 0 0 chr4 121818561 121818617 -33811503 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1514 329 143 0 25 chr4 121818619 121818677 -33811443 + (CAGAGA)n Simple_repeat Simple_repeat 2 57 0 5 1514 3527 43 5 0 chr4 121818677 121819071 -33811049 + MTA_Mm LTR MaLR 1 396 0 5 1514 329 143 0 25 chr4 121819071 121819091 -33811029 + (CAGAGA)n Simple_repeat Simple_repeat 4 23 0 5 1514 310 382 16 16 chr4 121819095 121819220 -33810900 - RSINE1 SINE B4 -40 125 1 5 1514 744 227 203 6 chr4 121819278 121819455 -33810665 - B3 SINE B2 -3 213 2 5 1514 227 431 0 0 chr4 121819455 121819557 -33810563 - ID_B1 SINE B4 -38 186 85 5 1514 309 222 0 14 chr4 121819562 121819635 -33810485 - ID_B1 SINE B4 -2 222 151 5 1514 6068 108 5 10 chr4 121819697 121820260 -33809860 + L1_Mus2 LINE L1 5102 5665 -218 5 1514 3064 9 0 0 chr4 121820260 121820582 -33809538 - RLTRETN_Mm LTR ERVK 0 322 1 5 1514 6068 80 22 10 chr4 121820582 121821319 -33808801 + L1_Mus2 LINE L1 5666 6413 -153 5 1514 229 259 19 0 chr4 121821342 121821396 -33808724 + B2_Mm2 SINE B2 17 71 -124 5 1514 211 250 0 0 chr4 121821366 121821406 -33808714 + ID4_ SINE ID 41 80 -3 5 1514 4142 138 22 61 chr4 121821908 121822262 -33807858 - RMER17A LTR ERVK 0 751 401 5 1514 399 21 0 0 chr4 121822262 121822310 -33807810 + (CAGAGA)n Simple_repeat Simple_repeat 5 52 0 5 1514 4142 138 22 61 chr4 121822310 121822737 -33807383 - RMER17A LTR ERVK -351 400 1 5 1514 397 355 7 0 chr4 121823145 121823283 -33806837 - B1_Mus2 SINE Alu -8 139 1 5 1514 367 49 73 12 chr4 121823385 121823467 -33806653 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 5 1514 344 336 76 0 chr4 121823475 121823606 -33806514 - ID_B1 SINE B4 -7 217 77 5 1514 229 276 40 0 chr4 121823697 121823773 -33806347 - RSINE1 SINE B4 -10 155 77 5 1514 318 274 245 22 chr4 121824102 121824371 -33805749 + L2 LINE L2 2485 2813 -606 5 1514 3654 105 10 20 chr4 121824378 121825198 -33804922 - L1Md_A LINE L1 -4142 1741 937 5 1514 26102 88 18 6 chr4 121825192 121828838 -33801282 + L1Md_F2 LINE L1 1897 5585 -298 5 1514 8434 58 2 1 chr4 121828840 121829831 -33800289 + L1Md_F2 LINE L1 5588 6579 -3 5 1514 648 0 0 0 chr4 121829982 121830054 -33800066 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 5 1514 236 230 52 94 chr4 121830100 121830196 -33799924 + B2_Mm2 SINE B2 1 92 -103 5 1514 264 30 0 0 chr4 121830281 121830314 -33799806 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1514 1215 67 0 16 chr4 121830315 121830497 -33799623 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1514 469 284 76 88 chr4 121830659 121830910 -33799210 + RLTR26 LTR ERVK 168 415 -227 5 1514 6598 42 1 5 chr4 121831307 121832072 -33798048 - L1Md_F3 LINE L1 -3 6581 5820 5 1514 336 233 27 0 chr4 121832072 121832145 -33797975 + B4A SINE B4 214 288 -4 5 1514 288 0 0 0 chr4 121832166 121832198 -33797922 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1514 769 266 118 24 chr4 121832605 121832859 -33797261 + ORR1D2 LTR MaLR 93 370 0 5 1514 412 245 32 11 chr4 121832892 121832987 -33797133 + PB1D10 SINE Alu 5 101 -16 5 1514 33 0 0 0 chr4 121833252 121833285 -33796835 + AT_rich Low_complexity Low_complexity 1 33 0 5 1514 602 218 110 23 chr4 121833290 121833545 -33796575 - RMER4B LTR ERVK -13 572 264 5 1514 713 267 42 29 chr4 121833630 121833950 -33796170 - RMER4B LTR ERVK -127 339 15 5 1514 618 304 27 0 chr4 121833951 121834099 -33796021 - B3 SINE B2 -15 201 50 5 1514 1133 282 107 11 chr4 121834136 121834574 -33795546 - RCHARR1 DNA MER1_type -478 496 17 5 1514 4249 231 21 54 chr4 121834646 121835709 -33794411 + RLTR25B LTR ERVK 1 1028 0 5 1514 387 0 0 0 chr4 121835769 121835812 -33794308 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1514 660 300 96 18 chr4 121835940 121836555 -33793565 + L1MB5 LINE L1 5503 6165 -9 5 1514 376 405 22 6 chr4 121836627 121836808 -33793312 + ID_B1 SINE B4 1 184 -40 5 1514 254 304 99 50 chr4 121836828 121836949 -33793171 + B1F1 SINE Alu 2 128 -21 5 1514 209 246 246 29 chr4 121837402 121837540 -33792580 + L2a LINE L2 1883 2050 -1369 5 1514 242 347 40 26 chr4 121837791 121837942 -33792178 + L2a LINE L2 2083 2235 -1184 5 1514 378 282 14 84 chr4 121838296 121838439 -33791681 + B1F SINE Alu 16 148 -1 5 1514 1023 101 0 51 chr4 121838455 121838611 -33791509 + B1_Mus1 SINE Alu 1 148 0 5 1514 393 123 0 0 chr4 121838612 121838677 -33791443 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1514 286 279 57 23 chr4 121838700 121838788 -33791332 + ID_B1 SINE B4 127 217 -7 5 1514 335 357 0 16 chr4 121838934 121839062 -33791058 + RSINE1 SINE B4 38 163 -2 5 1514 690 147 0 0 chr4 121839276 121839433 -33790687 + (TC)n Simple_repeat Simple_repeat 2 158 0 5 1514 271 323 8 16 chr4 121839446 121839575 -33790545 + CT-rich Low_complexity Low_complexity 1 128 0 5 1514 273 57 0 0 chr4 121839634 121839669 -33790451 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 5 1514 547 75 21 0 chr4 121839676 121839770 -33790350 + (CAAAA)n Simple_repeat Simple_repeat 2 97 0 5 1514 236 348 182 24 chr4 121840813 121841066 -33789054 + L2a LINE L2 2964 3256 -170 5 1514 4104 226 58 55 chr4 121841117 121841281 -33788839 - RMER12 LTR ERVK -111 1211 995 5 1514 531 69 0 0 chr4 121841281 121841353 -33788767 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1514 4104 226 58 55 chr4 121841353 121842395 -33787725 - RMER12 LTR ERVK -328 994 2 5 1514 2353 225 25 30 chr4 121843160 121844066 -33786054 - Lx2 LINE L1 -539 6458 5603 5 1514 3030 145 18 4 chr4 121844066 121844580 -33785540 + Lx2 LINE L1 6476 6996 -1 5 1514 224 310 52 0 chr4 121844746 121844804 -33785316 + MER5A DNA MER1_type 32 92 -97 5 1514 228 323 10 31 chr4 121844914 121845010 -33785110 + CT-rich Low_complexity Low_complexity 3 96 0 5 1514 422 18 0 18 chr4 121845020 121845076 -33785044 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1514 217 333 137 0 chr4 121845084 121845186 -33784934 - B1F1 SINE Alu -29 120 5 5 1514 567 240 78 0 chr4 121845895 121846024 -33784096 + B1_Mur3 SINE Alu 2 140 -9 5 1514 296 261 14 0 chr4 121846048 121846117 -33784003 + ID4_ SINE ID 2 71 -12 5 1514 361 305 9 9 chr4 121846119 121846225 -33783895 + B3 SINE B2 100 205 -11 5 1514 2141 122 15 3 chr4 121846653 121846983 -33783137 + MTB LTR MaLR 3 336 -64 6 1514 254 260 39 47 chr4 121846984 121847113 -33783007 + L1VL1 LINE L1 239 366 -6056 6 1514 381 276 44 7 chr4 121847208 121847343 -33782777 + L1_Mus1 LINE L1 664 803 -5813 6 1514 18777 175 41 39 chr4 121847351 121848673 -33781447 + L1_Mus1 LINE L1 725 1988 -3895 6 1514 435 19 0 0 chr4 121848673 121848725 -33781395 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 6 1514 18777 162 64 32 chr4 121848725 121849335 -33780785 + L1_Mus1 LINE L1 1989 2582 -3301 6 1514 2912 93 5 0 chr4 121849335 121849733 -33780387 + MTB LTR MaLR 1 400 0 6 1514 18777 141 49 24 chr4 121849733 121853556 -33776564 + L1_Mus1 LINE L1 2583 6566 -1 6 1514 32 26 0 0 chr4 121853556 121853595 -33776525 + AT_rich Low_complexity Low_complexity 1 39 0 6 1514 587 138 0 0 chr4 121853614 121853701 -33776419 + MTB_Mm LTR MaLR 314 400 0 6 1514 6890 107 48 4 chr4 121853701 121854752 -33775368 + MTB_Mm-int LTR MaLR 1 1098 0 6 1514 1245 149 5 0 chr4 121854752 121854947 -33775173 + MTB_Mm LTR MaLR 1 196 -211 6 1514 472 226 0 0 chr4 121854947 121855049 -33775071 + L1Md_F LINE L1 358 459 -6157 6 1514 30822 60 2 10 chr4 121855055 121859349 -33770771 + L1Md_F LINE L1 1270 5527 -356 6 1514 932 185 42 51 chr4 121859349 121859408 -33770712 + MTB LTR MaLR 141 193 -203 6 1514 7337 69 6 38 chr4 121859408 121860436 -33769684 + L1Md_F2 LINE L1 5587 6581 -1 6 1514 987 99 8 9 chr4 121860436 121860592 -33769528 + MTB LTR MaLR 194 358 -42 6 1514 38383 18 18 6 chr4 121860601 121866864 -33763256 - L1Md_A LINE L1 -2 6580 232 6 1514 415 71 0 0 chr4 121866871 121866927 -33763193 + MTB LTR MaLR 345 400 0 6 1514 1547 217 51 37 chr4 121867251 121867516 -33762604 - Lx4B LINE L1 -20 7038 6769 6 1514 597 40 0 0 chr4 121867516 121867592 -33762528 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1514 1547 230 45 34 chr4 121867592 121867785 -33762335 - Lx4B LINE L1 -290 6768 6572 6 1514 806 230 149 22 chr4 121867780 121868056 -33762064 - L1_Mur2 LINE L1 -175 5702 5392 6 1514 591 40 0 0 chr4 121868509 121868583 -33761537 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 6 1514 282 319 22 0 chr4 121868583 121868674 -33761446 - PB1D10 SINE Alu -12 105 13 6 1514 261 319 33 0 chr4 121868593 121868684 -33761436 - ID_B1 SINE B4 -48 176 83 6 1514 460 343 34 0 chr4 121868712 121868919 -33761201 - B3 SINE B2 0 216 3 6 1514 465 263 45 129 chr4 121868938 121869139 -33760981 - B3A SINE B2 -10 185 2 6 1514 684 56 0 0 chr4 121869145 121869234 -33760886 + (TTAG)n Simple_repeat Simple_repeat 4 92 0 6 1514 319 241 36 0 chr4 121869456 121869539 -33760581 - PB1D9 SINE Alu -25 95 10 6 1514 1768 54 0 0 chr4 121869563 121869787 -33760333 + L1Md_F2 LINE L1 5363 5586 -297 6 1514 7994 50 2 1 chr4 121869787 121870769 -33759351 + L1Md_F2 LINE L1 5587 6569 -13 6 1514 22 35 0 0 chr4 121870885 121870914 -33759206 + GC_rich Low_complexity Low_complexity 1 29 0 6 1514 224 345 76 0 chr4 121871123 121871242 -33758878 + L2 LINE L2 2477 2604 -815 6 1514 202 250 67 0 chr4 121871376 121871436 -33758684 - L2 LINE L2 -1467 1952 1889 6 1514 2658 146 43 6 chr4 121872034 121872503 -33757617 + Lx LINE L1 6165 6650 -4 6 1514 261 380 37 31 chr4 121872505 121872668 -33757452 - ID_B1 SINE B4 -55 169 6 6 1514 347 298 110 12 chr4 121872737 121872910 -33757210 - L1MB7 LINE L1 -9 6165 5976 6 1514 457 272 214 14 chr4 121873011 121873436 -33756684 - L1MB7 LINE L1 -355 5829 5320 6 1514 468 267 39 46 chr4 121873478 121873631 -33756489 - B3 SINE B2 0 216 65 6 1514 309 51 0 0 chr4 121873673 121873712 -33756408 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 6 1514 325 274 20 31 chr4 121873712 121873810 -33756310 - B1F2 SINE Alu -13 136 40 6 1514 445 318 48 29 chr4 121873875 121874082 -33756038 + B3 SINE B2 2 212 -4 6 1514 208 200 16 16 chr4 121874179 121874240 -33755880 + T-rich Low_complexity Low_complexity 6 66 0 6 1514 243 0 0 0 chr4 121874388 121874415 -33755705 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1514 265 336 72 48 chr4 121874767 121874892 -33755228 - B1F SINE Alu -21 128 1 6 1514 309 432 17 6 chr4 121874910 121875087 -33755033 - ID_B1 SINE B4 -40 184 6 6 1514 415 302 101 23 chr4 121875164 121875677 -33754443 - L1MB5 LINE L1 -9 6165 5609 6 1514 3538 208 27 77 chr4 121875971 121876888 -33753232 - RLTR25B LTR ERVK -1 1027 157 6 1514 251 279 44 0 chr4 121876917 121876985 -33753135 + B3A SINE B2 90 160 -38 6 1514 370 341 33 14 chr4 121877021 121877232 -33752888 - B3 SINE B2 0 216 2 6 1514 437 256 15 53 chr4 121877277 121877409 -33752711 + B1_Mur1 SINE Alu 22 148 -1 6 1514 339 335 124 0 chr4 121877411 121877596 -33752524 + B3 SINE B2 2 209 -7 6 1514 1641 135 98 13 chr4 121877626 121877936 -33752184 + IAPLTR4_I LTR ERVK 1 465 -10 6 1514 5543 82 11 16 chr4 121877936 121878785 -33751335 + IAPLTR4_I LTR ERVK 18 952 -6629 6 1514 1184 210 105 52 chr4 121878897 121879388 -33750732 + RMER16-int LTR ERVK 251 668 -5469 6 1514 397 248 88 0 chr4 121879391 121879504 -33750616 + RMER16-int LTR ERVK 938 1060 -5077 6 1514 282 267 0 55 chr4 121879517 121879608 -33750512 + ETnERV3-int LTR ERVK 2454 2539 -4867 6 1514 6557 110 43 11 chr4 121879620 121881004 -33749116 + ETnERV3-int LTR ERVK 2735 4271 -3135 6 1514 467 178 9 36 chr4 121881009 121881120 -33749000 + MMETn-int LTR ERVK 2357 2464 -2380 6 1514 672 95 34 8 chr4 121881146 121881263 -33748857 + ETnERV3-int LTR ERVK 4530 4649 -2932 6 1514 1855 170 0 0 chr4 121881403 121881745 -33748375 + IAPLTR3-int LTR ERVK 5098 5427 -2154 6 1514 4147 156 1 16 chr4 121881746 121882450 -33747670 + IAPLTR3-int LTR ERVK 6108 6801 -20 6 1514 1646 133 119 10 chr4 121882450 121882761 -33747359 + IAPLTR4 LTR ERVK 1 345 0 6 1514 232 333 0 0 chr4 121882795 121882858 -33747262 + ID_B1 SINE B4 105 167 -57 6 1514 279 0 0 0 chr4 121882998 121883029 -33747091 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1514 777 22 0 0 chr4 121883267 121883358 -33746762 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 1514 248 358 0 0 chr4 121883848 121883943 -33746177 - B1F SINE Alu -54 95 1 6 1514 234 325 37 37 chr4 121883954 121884088 -33746032 + L2 LINE L2 2103 2236 -1183 6 1514 270 316 74 58 chr4 121884202 121884323 -33745797 + ID_B1 SINE B4 102 224 0 6 1514 491 254 57 50 chr4 121884353 121884494 -33745626 + B1F SINE Alu 6 147 -2 6 1514 437 301 9 0 chr4 121884616 121884729 -33745391 + ID_B1 SINE B4 87 200 -24 6 1514 373 314 29 36 chr4 121884772 121884911 -33745209 + RSINE1 SINE B4 23 160 -5 6 1514 232 333 59 41 chr4 121884919 121885088 -33745032 + L2 LINE L2 2477 2648 -771 6 1514 215 331 161 7 chr4 121885105 121885248 -33744872 - L2 LINE L2 -1371 2048 1884 6 1514 2583 147 44 11 chr4 121885838 121886291 -33743829 + Lx LINE L1 6176 6643 -11 6 1514 313 387 40 35 chr4 121886299 121886473 -33743647 - ID_B1 SINE B4 -49 175 1 6 1514 635 312 93 18 chr4 121886537 121887151 -33742969 - L1MB5 LINE L1 -9 6165 5504 6 1514 477 307 12 80 chr4 121887312 121887475 -33742645 - B3 SINE B2 0 216 65 6 1514 526 202 15 68 chr4 121887509 121887642 -33742478 - B1_Mur1 SINE Alu -1 148 23 6 1514 382 338 25 5 chr4 121887685 121887887 -33742233 + B3 SINE B2 2 207 -9 6 1514 306 0 0 0 chr4 121887971 121888005 -33742115 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1514 285 235 11 86 chr4 121888008 121888101 -33742019 - B1_Mur4 SINE Alu -2 148 63 6 1514 437 0 19 0 chr4 121888189 121888242 -33741878 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1514 379 300 69 8 chr4 121888368 121888499 -33741621 + RCHARR1 DNA MER1_type 3 141 -833 6 1514 323 277 96 0 chr4 121888628 121888711 -33741409 - PB1D7 SINE Alu -29 91 1 6 1514 379 369 43 6 chr4 121888745 121888906 -33741214 - ID_B1 SINE B4 -56 168 2 6 1514 273 232 144 0 chr4 121889261 121889386 -33740734 - L1M4 LINE L1 -307 5867 5725 6 1514 1721 133 8 183 chr4 121889391 121889768 -33740352 + RLTR10C LTR ERVK 1 311 0 6 1514 538 111 33 0 chr4 121889768 121889858 -33740262 + MMERVK10C-int LTR ERVK 1 93 -7488 6 1514 240 235 0 19 chr4 121889858 121889910 -33740210 + RLTR27 LTR ERVK 222 272 -37 6 1514 6351 131 10 0 chr4 121889910 121890912 -33739208 + MMERVK10C-int LTR ERVK 222 1233 -6348 6 1514 9722 86 0 1 chr4 121890938 121892294 -33737826 + MMERVK10C-int LTR ERVK 3531 4884 -2697 6 1514 14806 93 3 5 chr4 121892292 121894737 -33735383 + MMERVK10C-int LTR ERVK 5215 7680 0 6 1514 1796 154 150 11 chr4 121894737 121895117 -33735003 + RLTR10C LTR ERVK 1 433 -3 6 1514 1882 207 12 74 chr4 121895520 121896012 -33734108 - RLTR25B LTR ERVK -1 1102 642 6 189 3702 169 53 48 chr4 121896012 121897082 -33733038 + RLTR13D1 LTR ERVK 1 1023 0 6 1515 2481 201 17 101 chr4 121897082 121897354 -33732766 - RLTR25B LTR ERVK -453 575 316 6 1515 1094 101 0 0 chr4 121897354 121897502 -33732618 + B1_Mus1 SINE Alu 1 148 0 6 1515 2481 201 17 101 chr4 121897502 121897837 -33732283 - RLTR25B LTR ERVK -713 315 21 6 1515 1037 285 134 27 chr4 121897927 121898367 -33731753 + RCHARR1 DNA MER1_type 14 505 -469 6 1515 575 320 99 6 chr4 121898367 121898545 -33731575 + B3 SINE B2 3 197 -19 6 1515 832 243 64 23 chr4 121898545 121898878 -33731242 + RMER4B LTR ERVK 1 353 -113 6 1515 866 229 255 7 chr4 121898950 121899232 -33730888 + RMER4B LTR ERVK 234 585 0 6 1515 369 0 0 0 chr4 121899235 121899276 -33730844 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1515 385 235 47 75 chr4 121899546 121899652 -33730468 - PB1D7 SINE Alu -3 117 15 6 1515 1026 279 87 20 chr4 121899698 121900045 -33730075 - ORR1D2 LTR MaLR 0 370 1 6 1515 600 27 0 0 chr4 121900407 121900481 -33729639 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1515 556 336 47 60 chr4 121900908 121901209 -33728911 - RLTR26 LTR ERVK -168 474 178 6 1515 300 305 16 95 chr4 121901369 121901558 -33728562 - B3A SINE B2 0 216 2 6 1515 209 83 28 0 chr4 121901562 121901598 -33728522 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 6 1515 211 196 22 0 chr4 121901708 121901754 -33728366 - B1_Mur4 SINE Alu -103 47 1 6 1515 192 77 0 0 chr4 121901807 121901833 -33728287 + (ATG)n Simple_repeat Simple_repeat 2 27 0 6 1515 5853 14 0 0 chr4 121901835 121902531 -33727589 + L1Md_A LINE L1 4891 5586 -297 6 1515 8749 18 0 0 chr4 121902531 121903527 -33726593 + L1Md_A LINE L1 5587 6582 0 6 1515 508 315 36 95 chr4 121903530 121903751 -33726369 - B4A SINE B4 -82 210 3 6 1515 958 119 19 0 chr4 121903802 121903961 -33726159 - L1_Mus3 LINE L1 -7 6631 6470 6 1515 323 260 79 135 chr4 121904249 121904427 -33725693 - RLTR43A LTR ERVK -2 362 195 6 1515 213 302 0 19 chr4 121904994 121905048 -33725072 + PB1D9 SINE Alu 32 84 -36 6 1515 1600 153 57 72 chr4 121905581 121905913 -33724207 + ORR1A2 LTR MaLR 1 327 0 6 1515 498 49 37 0 chr4 121906029 121906111 -33724009 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 6 1515 430 383 19 0 chr4 121906152 121906314 -33723806 - ID_B1 SINE B4 -49 175 11 6 1515 598 235 82 16 chr4 121906421 121906603 -33723517 + RMER19C LTR ERVK 1 194 -417 6 1515 3432 219 21 11 chr4 121906603 121907319 -33722801 + MurERV4_19-int LTR ERVK 312 1035 -4745 6 1515 849 191 0 6 chr4 121907319 121907493 -33722627 + Lx LINE L1 6475 6647 -7 6 1515 3432 219 21 11 chr4 121907493 121907538 -33722582 + MurERV4_19-int LTR ERVK 1036 1080 -4700 6 1515 235 253 238 83 chr4 121907599 121907780 -33722340 - B3 SINE B2 -7 209 1 6 1515 280 356 38 9 chr4 121907853 121907958 -33722162 - PB1D10 SINE Alu -7 110 3 6 1515 297 0 0 0 chr4 121908123 121908156 -33721964 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 1515 495 0 0 0 chr4 121908156 121908210 -33721910 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1515 427 349 17 29 chr4 121908276 121908450 -33721670 - B3A SINE B2 -23 175 4 7 1515 22 35 0 0 chr4 121908452 121908481 -33721639 + AT_rich Low_complexity Low_complexity 1 29 0 7 1515 381 383 13 13 chr4 121908486 121908642 -33721478 - RSINE1 SINE B4 -6 159 4 7 1515 309 330 192 4 chr4 121908695 121908929 -33721191 - L2 LINE L2 -657 2762 2485 7 1515 290 286 26 0 chr4 121909318 121909395 -33720725 + RSINE1 SINE B4 81 159 -6 7 1515 568 302 0 8 chr4 121909502 121909632 -33720488 + ID_B1 SINE B4 76 204 -20 7 1515 481 246 55 0 chr4 121909729 121909839 -33720281 + B1_Mur2 SINE Alu 22 137 -12 7 1515 238 220 0 20 chr4 121909888 121909939 -33720181 + B3A SINE B2 2 51 -147 7 1515 218 365 10 0 chr4 121910584 121910688 -33719432 + CT-rich Low_complexity Low_complexity 1 105 0 7 1515 1672 136 27 14 chr4 121911612 121911904 -33718216 + L1_Mus3 LINE L1 6342 6637 -1 7 1515 331 201 141 0 chr4 121911930 121912036 -33718084 + B1_Mur2 SINE Alu 11 129 -21 7 1515 221 169 26 0 chr4 121912041 121912118 -33718002 + A-rich Low_complexity Low_complexity 4 82 0 7 1515 280 318 55 103 chr4 121912154 121912319 -33717801 + RSINE1 SINE B4 7 163 -2 7 1515 24 32 0 0 chr4 121912319 121912350 -33717770 + AT_rich Low_complexity Low_complexity 1 31 0 7 1515 1666 199 13 3 chr4 121912383 121912696 -33717424 - ORR1A2 LTR MaLR -7 320 5 7 1515 381 306 106 26 chr4 121912718 121912869 -33717251 + B3 SINE B2 54 216 0 7 1515 696 333 68 0 chr4 121912914 121913148 -33716972 + B4A SINE B4 2 251 -41 7 1515 3145 106 4 13 chr4 121913204 121913663 -33716457 + L1_Mus2 LINE L1 6112 6566 0 7 1515 256 348 104 0 chr4 121913696 121913811 -33716309 - ID_B1 SINE B4 -16 208 82 7 1515 593 245 14 7 chr4 121913833 121913973 -33716147 - B1_Mm SINE Alu -6 141 1 7 1515 420 265 10 0 chr4 121914734 121914836 -33715284 + B1_Mur1 SINE Alu 26 128 -21 7 1515 619 108 9 9 chr4 121914841 121914953 -33715167 + (GA)n Simple_repeat Simple_repeat 2 113 0 7 1515 261 222 0 0 chr4 121915857 121915920 -33714200 + L1_Mus4 LINE L1 5241 5303 -580 7 1515 1168 82 0 0 chr4 121915920 121916067 -33714053 + B1_Mus2 SINE Alu 1 147 0 7 1515 453 62 0 0 chr4 121916069 121916134 -33713986 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 7 1515 391 166 6 34 chr4 121916134 121916244 -33713876 + L1_Mur2 LINE L1 5271 5373 -513 7 1515 221 324 131 62 chr4 121916344 121916604 -33713516 + L2a LINE L2 2979 3256 -170 7 1515 400 222 89 0 chr4 121916635 121916762 -33713358 - RMER12 LTR ERVK -29 1293 1097 7 1515 654 136 84 0 chr4 121916817 121916954 -33713166 + L1_Mus4 LINE L1 5566 5712 -171 7 1515 180 111 0 0 chr4 121917580 121917607 -33712513 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 7 1515 231 125 0 0 chr4 121917635 121917675 -33712445 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1515 264 77 0 0 chr4 121917738 121917777 -33712343 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 7 1515 516 16 0 0 chr4 121917937 121917998 -33712122 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1515 236 191 0 0 chr4 121918044 121918086 -33712034 - RSINE1 SINE B4 -87 78 37 7 1515 314 266 63 0 chr4 121918234 121918313 -33711807 - ID_B1 SINE B4 -7 217 134 7 1515 32327 82 5 4 chr4 121918320 121924499 -33705621 - L1Md_F2 LINE L1 0 6582 392 7 1515 305 363 26 0 chr4 121924529 121924642 -33705478 - B1F SINE Alu -11 138 23 7 1515 19625 131 19 7 chr4 121924963 121929099 -33701021 + L1_Mus1 LINE L1 2384 6567 0 7 1515 521 341 44 6 chr4 121929113 121929296 -33700824 + B3 SINE B2 27 216 0 7 1515 271 356 0 0 chr4 121929338 121929428 -33700692 + PB1D10 SINE Alu 13 102 -15 7 1515 619 134 33 50 chr4 121929431 121929611 -33700509 + GA-rich Low_complexity Low_complexity 4 180 0 7 1515 1131 215 98 3 chr4 121930087 121930372 -33699748 + L1_Mur2 LINE L1 5392 5703 -174 7 1515 1601 206 59 33 chr4 121930394 121930553 -33699567 + Lx4B LINE L1 6602 6768 -290 7 1515 339 25 0 0 chr4 121930553 121930593 -33699527 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1515 1601 206 59 33 chr4 121930593 121930859 -33699261 + Lx4B LINE L1 6769 7038 -20 7 1515 411 269 25 25 chr4 121931601 121931719 -33698401 - B3 SINE B2 -6 210 93 7 1515 217 328 17 0 chr4 121931708 121931766 -33698354 - BC1_Mm scRNA scRNA -75 77 19 7 1515 664 217 28 14 chr4 121931801 121931946 -33698174 - B1_Mur3 SINE Alu -2 147 1 7 1515 1117 82 0 0 chr4 121932605 121932752 -33697368 + B1_Mus1 SINE Alu 2 148 0 7 1515 21 0 0 0 chr4 121932752 121932773 -33697347 + AT_rich Low_complexity Low_complexity 1 21 0 7 1515 295 41 41 0 chr4 121932775 121932824 -33697296 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 7 1515 683 102 9 0 chr4 121932994 121933060 -33697060 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1515 693 0 0 0 chr4 121933060 121933137 -33696983 + (GAA)n Simple_repeat Simple_repeat 3 79 0 7 1515 683 102 9 0 chr4 121933137 121933178 -33696942 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1515 1095 168 0 0 chr4 121933562 121933752 -33696368 - Lx2 LINE L1 -331 6666 6477 7 1515 2691 216 102 18 chr4 121933753 121934507 -33695613 + Lx2A LINE L1 5595 6416 -592 7 1515 4886 136 40 21 chr4 121934507 121935377 -33694743 + RMER17D LTR ERVK 1 887 -2 7 1515 2691 216 102 18 chr4 121935377 121935417 -33694703 + Lx2A LINE L1 6417 6456 -552 7 1515 4276 222 64 53 chr4 121936184 121936965 -33693155 + RMER12 LTR ERVK 1 786 -536 7 1515 372 22 0 0 chr4 121936965 121937010 -33693110 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1515 4276 222 64 53 chr4 121937010 121937425 -33692695 + RMER12 LTR ERVK 787 1210 -112 7 1515 244 332 217 24 chr4 121937477 121937730 -33692390 - L2a LINE L2 -170 3256 2955 7 1515 190 0 32 32 chr4 121938712 121938743 -33691377 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1515 426 146 0 0 chr4 121938904 121939000 -33691120 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1515 294 267 38 47 chr4 121939023 121939129 -33690991 + PB1D10 SINE Alu 13 117 0 7 1515 450 0 0 0 chr4 121939214 121939264 -33690856 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1515 216 271 16 63 chr4 121939438 121939501 -33690619 - ID_B1 SINE B4 -73 151 92 7 1515 240 322 35 0 chr4 121939515 121939602 -33690518 - ID_B1 SINE B4 -8 216 127 7 1515 339 85 0 0 chr4 121939617 121939664 -33690456 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 7 1515 967 103 7 52 chr4 121939664 121939818 -33690302 - B1_Mus1 SINE Alu -1 147 1 7 1515 503 277 34 47 chr4 121939838 121939986 -33690134 - B1F SINE Alu -1 148 3 7 1515 354 211 60 26 chr4 121940368 121940485 -33689635 - L2 LINE L2 -1217 2202 2082 7 1515 234 307 194 11 chr4 121940724 121940915 -33689205 - L2 LINE L2 -1369 2050 1825 7 1515 560 333 23 6 chr4 121941482 121941657 -33688463 - ID_B1 SINE B4 -46 178 1 7 1515 484 296 114 8 chr4 121941745 121942337 -33687783 - L1MB7 LINE L1 -30 6144 5503 7 1515 6582 122 2 1 chr4 121942371 121944013 -33686107 - L1_Mus1 LINE L1 0 6567 4923 7 1515 23558 103 9 16 chr4 121944013 121947813 -33682307 + L1Md_F2 LINE L1 1811 5584 -299 7 1515 7289 69 13 14 chr4 121947816 121948056 -33682064 + L1Md_F2 LINE L1 5588 5827 -755 7 1515 5761 92 82 7 chr4 121948056 121948920 -33681200 - RLTR13B3 LTR ERVK 0 929 1 7 1515 7289 69 13 14 chr4 121948920 121949660 -33680460 + L1Md_F2 LINE L1 5828 6567 -15 7 1515 6462 134 16 2 chr4 121949669 121950801 -33679319 - L1_Mus1 LINE L1 -945 4938 3791 7 1515 837 209 38 19 chr4 121950800 121951010 -33679110 - L1_Mus1 LINE L1 -6023 593 380 7 1515 200 273 0 0 chr4 121951091 121951146 -33678974 + (CATTT)n Simple_repeat Simple_repeat 1 55 0 7 1515 4508 197 77 58 chr4 121951208 121952291 -33677829 - RLTR25A LTR ERVK 0 1103 1 7 1515 1121 295 107 11 chr4 121952360 121952799 -33677321 + RCHARR1 DNA MER1_type 14 494 -480 7 1515 645 310 92 0 chr4 121952802 121952986 -33677134 + B3 SINE B2 1 201 -15 7 1515 670 290 30 17 chr4 121952990 121953225 -33676895 + RMER4B LTR ERVK 17 254 -331 7 1515 594 262 79 6 chr4 121953385 121953550 -33676570 + RMER4B LTR ERVK 263 439 -146 7 1515 431 140 40 70 chr4 121953536 121953636 -33676484 + RMER4B LTR ERVK 356 452 -14 7 1515 23 0 0 0 chr4 121953643 121953666 -33676454 + AT_rich Low_complexity Low_complexity 1 23 0 7 1515 320 250 86 18 chr4 121953921 121954031 -33676089 - B1F SINE Alu 0 127 10 7 1515 912 290 93 17 chr4 121954069 121954413 -33675707 - ORR1D2 LTR MaLR 0 370 1 7 1515 324 0 0 0 chr4 121954776 121954812 -33675308 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1515 342 273 0 0 chr4 121954833 121954910 -33675210 - B4A SINE B4 -4 288 212 7 1515 501 331 62 75 chr4 121955294 121955641 -33674479 - RLTR26 LTR ERVK -227 415 58 7 1515 307 357 58 31 chr4 121955711 121955902 -33674218 - B3A SINE B2 -1 197 2 7 1515 230 95 24 0 chr4 121955907 121955949 -33674171 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 7 1515 23 33 0 0 chr4 121956099 121956129 -33673991 + AT_rich Low_complexity Low_complexity 1 30 0 7 1515 276 149 0 0 chr4 121956154 121956201 -33673919 + (ATG)n Simple_repeat Simple_repeat 2 48 0 7 1515 520 305 31 113 chr4 121956203 121956425 -33673695 - B4A SINE B4 -85 207 4 7 1515 851 117 39 7 chr4 121956478 121956633 -33673487 - L1_Mus3 LINE L1 -9 6629 6470 7 1515 369 248 41 82 chr4 121956914 121957085 -33673035 - RLTR43A LTR ERVK 0 364 201 7 1515 1733 149 61 13 chr4 121958257 121958569 -33671551 + ORR1A2 LTR MaLR 1 327 0 7 1515 451 0 34 0 chr4 121958684 121958743 -33671377 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 7 1515 413 372 20 0 chr4 121958796 121958944 -33671176 - ID_B1 SINE B4 -61 163 13 7 1515 642 253 73 11 chr4 121959053 121959245 -33670875 + RMER19C LTR ERVK 1 194 -417 7 1515 4605 201 14 9 chr4 121959245 121959954 -33670166 + MurERV4_19-int LTR ERVK 322 1035 -4745 7 1515 757 211 0 12 chr4 121959954 121960127 -33669993 + Lx LINE L1 6475 6645 -9 7 1515 4605 201 14 9 chr4 121960127 121960329 -33669791 + MurERV4_19-int LTR ERVK 1036 1237 -4543 7 1515 1296 169 11 138 chr4 121960325 121960695 -33669425 + MurERV4_19-int LTR ERVK 1624 1946 -3834 7 1515 2893 25 2 96 chr4 121960697 121961102 -33669018 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1515 953 86 159 0 chr4 121961102 121961265 -33668855 + IAPEz-int LTR ERVK 8 196 -6285 7 1515 5328 73 101 18 chr4 121961236 121962134 -33667986 + IAPEz-int LTR ERVK 67 983 -5498 7 1515 26244 17 1 2 chr4 121962118 121965220 -33664900 + IAPEz-int LTR ERVK 3384 6481 0 7 1515 2893 25 2 96 chr4 121965220 121965625 -33664495 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1515 9376 170 27 18 chr4 121965625 121966319 -33663801 + MurERV4_19-int LTR ERVK 1942 2620 -3160 7 1515 6360 80 21 12 chr4 121966319 121967216 -33662904 + L1Md_F2 LINE L1 5678 6582 0 7 1515 9376 170 27 18 chr4 121967216 121968476 -33661644 + MurERV4_19-int LTR ERVK 2621 3915 -1865 7 1515 1944 133 12 0 chr4 121968480 121968818 -33661302 + MurERV4_19-int LTR ERVK 4799 5140 -640 7 1515 17789 140 4 3 chr4 121968824 121971930 -33658190 + L1_Mm LINE L1 2376 5486 -397 8 1515 4975 96 3 12 chr4 121971930 121972648 -33657472 + L1Md_F2 LINE L1 5862 6572 -10 8 1515 17990 99 25 9 chr4 121972650 121975537 -33654583 - L1_Mm LINE L1 -949 4934 2001 8 1515 4103 112 2 3 chr4 121975541 121976142 -33653978 + L1_Mus1 LINE L1 5968 6567 0 8 1515 569 266 119 5 chr4 121976500 121976693 -33653427 - B3 SINE B2 0 216 2 8 1515 353 224 28 84 chr4 121976695 121976802 -33653318 - PB1D9 SINE Alu -1 119 19 8 1515 6684 53 5 0 chr4 121976838 121977666 -33652454 - L1Md_F2 LINE L1 -12 6570 5739 8 1515 509 310 34 14 chr4 121977669 121977816 -33652304 + B3A SINE B2 1 150 -48 8 1515 428 344 49 43 chr4 121977902 121978066 -33652054 - B3A SINE B2 -7 191 27 8 1515 289 268 9 71 chr4 121978086 121978196 -33651924 - B1_Mur4 SINE Alu -21 129 35 8 1515 1298 93 0 5 chr4 121978285 121978479 -33651641 - L1_Mus2 LINE L1 0 6566 6374 8 1515 7183 47 30 5 chr4 121978545 121979913 -33650207 - L1Md_F2 LINE L1 -3 6579 5183 8 1515 685 176 12 0 chr4 121979929 121980094 -33650026 + L1_Mur2 LINE L1 3259 3425 -2461 8 1515 6443 79 3 2 chr4 121980092 121980995 -33649125 + L1_Mus1 LINE L1 5658 6561 -6 8 1515 1905 163 49 15 chr4 121981011 121981260 -33648860 + L1_Mur2 LINE L1 3402 3658 -2219 8 1515 1130 60 0 7 chr4 121981260 121981412 -33648708 + (GGGAGA)n Simple_repeat Simple_repeat 1 151 0 8 1515 1905 163 49 15 chr4 121981412 121981567 -33648553 + L1_Mur2 LINE L1 3659 3820 -2057 8 1515 302 317 99 8 chr4 121981596 121981717 -33648403 - L1M2 LINE L1 -820 5323 5192 8 1515 850 291 122 8 chr4 121981726 121982086 -33648034 + RCHARR1 DNA MER1_type 3 403 -571 8 1515 610 298 83 0 chr4 121982143 121982324 -33647796 + B3 SINE B2 2 197 -19 8 1515 1169 269 58 91 chr4 121982324 121982806 -33647314 + RMER4A LTR ERVK 1 466 0 8 1515 335 244 80 1 chr4 121983098 121983196 -33646924 - B1F1 SINE Alu -8 112 8 8 1515 1110 253 98 15 chr4 121983232 121983569 -33646551 - ORR1D2 LTR MaLR 0 370 6 8 1515 369 102 0 0 chr4 121983933 121983992 -33646128 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1515 212 344 0 0 chr4 121983998 121984059 -33646061 - RSINE1 SINE B4 -31 134 74 8 1515 611 337 17 17 chr4 121984050 121984225 -33645895 - B3A SINE B2 -22 176 2 8 1515 240 59 0 0 chr4 121984236 121984270 -33645850 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 8 1515 233 267 27 0 chr4 121984302 121984377 -33645743 - B1_Mur3 SINE Alu 0 149 73 8 1515 617 144 20 7 chr4 121984419 121984566 -33645554 + (TA)n Simple_repeat Simple_repeat 1 149 0 8 1515 388 138 0 0 chr4 121984566 121984624 -33645496 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1515 354 98 0 0 chr4 121984676 121984727 -33645393 + (ATG)n Simple_repeat Simple_repeat 3 53 0 8 1515 253 245 19 0 chr4 121984899 121984952 -33645168 - B4A SINE B4 -227 65 12 8 1515 403 274 29 110 chr4 121985205 121985414 -33644706 - B3 SINE B2 -3 192 1 8 1515 315 230 24 81 chr4 121985475 121985598 -33644522 - PB1D7 SINE Alu 0 120 5 8 1515 724 78 15 15 chr4 121985838 121985968 -33644152 + (CAGAGA)n Simple_repeat Simple_repeat 3 132 0 8 1515 444 347 27 0 chr4 121985990 121986137 -33643983 - B3A SINE B2 -46 152 2 8 1515 205 167 0 0 chr4 121986153 121986189 -33643931 + (TATG)n Simple_repeat Simple_repeat 1 36 0 8 1515 329 406 31 6 chr4 121986189 121986350 -33643770 - RSINE1 SINE B4 0 165 1 8 1515 271 332 146 68 chr4 121986388 121986799 -33643321 - L2 LINE L2 -654 2765 2323 8 1515 451 308 35 14 chr4 121986922 121987067 -33643053 + RSINE1 SINE B4 12 159 -6 8 1515 317 367 33 8 chr4 121987175 121987296 -33642824 + B1F SINE Alu 1 124 -25 8 1515 364 292 24 24 chr4 121987195 121987318 -33642802 + ID_B1 SINE B4 102 224 0 8 1515 266 299 29 93 chr4 121987379 121987418 -33642702 + MT2B LTR ERVL 127 156 -445 8 1515 494 344 8 0 chr4 121987418 121987549 -33642571 + B1_Mus2 SINE Alu 1 132 -15 8 1515 372 105 23 23 chr4 121988753 121988841 -33641279 + Lx LINE L1 6567 6654 0 8 1515 2544 184 47 33 chr4 121988852 121989402 -33640718 + L1VL4 LINE L1 214 771 -5531 8 1515 1949 17 0 0 chr4 121989394 121989627 -33640493 - L1Md_A LINE L1 -675 5907 5675 8 1515 5626 16 0 3 chr4 121989627 121990269 -33639851 + L1Md_A LINE L1 5943 6582 0 8 1515 1342 91 0 10 chr4 121990303 121990503 -33639617 + L1Md_F2 LINE L1 6373 6570 -12 8 1515 1780 160 29 23 chr4 121990536 121990882 -33639238 + Lx LINE L1 6305 6652 -2 8 1515 2636 177 9 25 chr4 121990900 121991461 -33638659 - L1_Mur2 LINE L1 -1706 4171 3620 8 1515 1255 58 6 0 chr4 121991456 121991630 -33638490 - L1_Mus2 LINE L1 -618 5948 5774 8 1515 4046 103 6 35 chr4 121991632 121992254 -33637866 + L1_Mus2 LINE L1 5961 6564 -2 8 1515 246 298 155 52 chr4 121992636 121992926 -33637194 - L2 LINE L2 -624 2795 2476 8 1515 261 0 0 0 chr4 121992932 121992961 -33637159 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1515 513 0 0 0 chr4 121992963 121993020 -33637100 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 1515 789 56 0 0 chr4 121993243 121993350 -33636770 + (TG)n Simple_repeat Simple_repeat 2 108 0 8 1515 457 281 8 16 chr4 121993351 121993474 -33636646 - RSINE1 SINE B4 -32 133 12 8 1515 484 229 65 8 chr4 121993586 121993709 -33636411 - B3 SINE B2 -86 130 1 8 1515 347 264 159 8 chr4 121993709 121993814 -33636306 - ID_B1 SINE B4 -31 193 70 8 1515 296 246 0 0 chr4 121993821 121993882 -33636238 - ID_B1 SINE B4 -6 218 158 8 1515 468 299 36 14 chr4 121993927 121994066 -33636054 - B1F SINE Alu -2 147 6 8 1515 214 322 55 11 chr4 121994179 121994270 -33635850 - PB1D10 SINE Alu -7 110 16 8 1515 299 271 8 56 chr4 121994540 121994665 -33635455 + MuRRS-int LTR ERV1 4572 4690 0 8 1515 3229 142 27 14 chr4 121994665 121995222 -33634898 + LTRIS2 LTR ERV1 1 564 0 8 1515 1258 174 75 0 chr4 121995224 121995506 -33634614 - MurERV4_19-int LTR ERVK -5475 305 3 8 1515 1368 245 12 119 chr4 121995508 121995938 -33634182 - RMER19C LTR ERVK 0 611 228 8 1515 283 305 116 0 chr4 121996073 121996168 -33633952 - Charlie4z DNA MER1_type -60 107 2 8 1515 306 227 13 51 chr4 121996652 121996731 -33633389 + ID4_ SINE ID 4 79 -4 8 1515 282 29 0 0 chr4 121996765 121996800 -33633320 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 8 1515 247 283 0 0 chr4 121997205 121997258 -33632862 - B1_Mur4 SINE Alu -65 85 33 8 1515 6389 111 10 36 chr4 121997331 121998197 -33631923 - L1_Mus3 LINE L1 -2 6636 5798 8 1515 1002 102 0 7 chr4 121998197 121998335 -33631785 - B1_Mus2 SINE Alu -10 137 1 8 1515 6389 111 10 36 chr4 121998335 121998545 -33631575 - L1_Mus3 LINE L1 -841 5797 5588 8 1515 249 316 170 35 chr4 121998765 121999047 -33631073 + L2a LINE L2 3031 3350 -76 8 1515 259 327 8 34 chr4 122000138 122000255 -33629865 + CT-rich Low_complexity Low_complexity 2 115 0 1 1515 307 333 10 0 chr4 122000265 122000367 -33629753 - B1F SINE Alu -23 126 24 2 1515 311 189 12 108 chr4 122001082 122001165 -33628955 + B1_Mur4 SINE Alu 42 146 -4 3 1515 237 305 38 9 chr4 122001194 122001300 -33628820 + B1F SINE Alu 5 113 -36 4 1515 651 336 102 9 chr4 122001315 122001540 -33628580 - B4A SINE B4 -39 253 8 5 1515 357 346 130 32 chr4 122001597 122001782 -33628338 - B3 SINE B2 -5 211 9 6 1515 513 44 0 0 chr4 122001879 122001947 -33628173 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1515 377 324 0 0 chr4 122001947 122002055 -33628065 - RSINE1 SINE B4 -44 121 14 8 1515 753 51 0 0 chr4 122002071 122002169 -33627951 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 9 1515 590 122 0 10 chr4 122002169 122002268 -33627852 + (TCC)n Simple_repeat Simple_repeat 1 98 0 1 1515 230 140 35 0 chr4 122002284 122002341 -33627779 + T-rich Low_complexity Low_complexity 6 64 0 1 1515 567 239 54 0 chr4 122002346 122002476 -33627644 - B1_Mur3 SINE Alu -1 148 12 1 1515 412 331 3 1 chr4 122003757 122003887 -33626233 - B1_Mus1 SINE Alu -11 138 7 1 1515 426 319 50 0 chr4 122003971 122004112 -33626008 - ID_B1 SINE B4 -1 223 76 1 1515 233 236 36 0 chr4 122004787 122004842 -33625278 - RSINE1 SINE B4 -28 137 81 1 1515 252 336 26 17 chr4 122005209 122005324 -33624796 + L2 LINE L2 2485 2600 -819 1 1515 264 30 0 0 chr4 122005440 122005473 -33624647 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1515 554 211 72 21 chr4 122005838 122006100 -33624020 + ORR1D2 LTR MaLR 1 360 -10 1 1515 421 243 46 18 chr4 122006144 122006253 -33623867 + PB1D10 SINE Alu 6 117 0 1 1515 24 0 0 0 chr4 122006510 122006534 -33623586 + AT_rich Low_complexity Low_complexity 1 24 0 2 1515 857 295 85 97 chr4 122006539 122007083 -33623037 - RMER4B LTR ERVK 0 585 49 2 1515 2271 226 86 38 chr4 122007059 122007528 -33622592 + RLTR25B LTR ERVK 311 791 -237 2 1515 1724 202 54 149 chr4 122007528 122008050 -33622070 + RMER16 LTR ERVK 1 478 -55 2 1515 1181 75 0 0 chr4 122008050 122008196 -33621924 - B1_Mus2 SINE Alu 0 147 2 2 1515 1724 202 54 149 chr4 122008196 122008262 -33621858 + RMER16 LTR ERVK 479 533 0 2 1515 2271 226 86 38 chr4 122008262 122008477 -33621643 + RLTR25B LTR ERVK 792 1027 -1 2 1515 4294 80 41 0 chr4 122008581 122009145 -33620975 + LTRIS_Mus LTR ERV1 1 587 0 2 1515 453 298 84 21 chr4 122009462 122009842 -33620278 + L1MB5 LINE L1 5762 6165 -9 2 1515 505 349 40 6 chr4 122009916 122010092 -33620028 + ID_B1 SINE B4 3 184 -40 2 1515 267 328 0 0 chr4 122010110 122010174 -33619946 + B1F SINE Alu 1 64 -85 2 1515 202 128 0 25 chr4 122010893 122010933 -33619187 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2 1515 2713 72 21 13 chr4 122010942 122011321 -33618799 + LTRIS_Mus LTR ERV1 1 382 -205 3 1515 380 278 8 94 chr4 122011320 122011447 -33618673 - RMER19C LTR ERVK -276 335 220 3 1515 4081 82 1 109 chr4 122011539 122012197 -33617923 + LTRIS_Mus LTR ERV1 1 587 0 3 1515 229 295 43 43 chr4 122012332 122012449 -33617671 + L2a LINE L2 2083 2199 -1220 3 1515 2414 131 75 12 chr4 122012504 122012993 -33617127 - LTRIS3 LTR ERV1 0 512 16 3 1515 441 0 0 0 chr4 122012994 122013043 -33617077 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1515 472 295 30 44 chr4 122013392 122013527 -33616593 + B1F SINE Alu 12 144 -5 3 1515 237 311 54 22 chr4 122013548 122013640 -33616480 + ID_B1 SINE B4 124 218 -6 3 1515 285 326 23 0 chr4 122013629 122013715 -33616405 + ID_B1 SINE B4 64 151 -73 3 1515 236 275 242 0 chr4 122013652 122013743 -33616377 + B1F2 SINE Alu 6 118 -31 3 1515 357 326 0 0 chr4 122013785 122013880 -33616240 + RSINE1 SINE B4 37 131 -34 4 1515 387 0 0 0 chr4 122013889 122013932 -33616188 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1515 272 252 18 55 chr4 122014011 122014120 -33616000 - PB1D10 SINE Alu 0 117 13 4 1515 792 40 0 0 chr4 122014152 122014252 -33615868 + (TC)n Simple_repeat Simple_repeat 2 101 0 4 1515 232 211 26 0 chr4 122014271 122014347 -33615773 + CT-rich Low_complexity Low_complexity 1 78 0 4 1515 207 0 0 0 chr4 122014433 122014456 -33615664 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1515 542 255 0 19 chr4 122015216 122015324 -33614796 - B1F2 SINE Alu -19 130 25 4 1515 261 298 203 56 chr4 122015407 122015748 -33614372 + L2a LINE L2 2855 3256 -170 3 1515 496 212 119 12 chr4 122015750 122015923 -33614197 - RMER12 LTR ERVK 0 1322 1074 4 1515 321 263 118 8 chr4 122015940 122015969 -33614151 - RMER12 LTR ERVK -155 1249 1216 4 1515 279 0 0 0 chr4 122015969 122016000 -33614120 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1515 3955 175 42 5 chr4 122016000 122016503 -33613617 - RMER12 LTR ERVK -538 784 255 4 1515 564 15 0 0 chr4 122016503 122016568 -33613552 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1515 3955 175 42 5 chr4 122016568 122016818 -33613302 - RMER12 LTR ERVK -1068 254 2 4 1515 216 229 31 62 chr4 122017542 122017607 -33612513 - MIRc SINE MIR -106 162 100 5 1515 594 0 0 0 chr4 122018582 122018648 -33611472 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1515 567 271 21 0 chr4 122018920 122019060 -33611060 + B1_Mus2 SINE Alu 5 147 0 5 1515 249 219 15 59 chr4 122019088 122019107 -33611013 + tRNA-Ala-GCY_ tRNA tRNA 5 66 -6 5 1515 291 174 0 0 chr4 122019107 122019153 -33610967 + ID4_ SINE ID 26 71 -12 5 1515 350 287 49 8 chr4 122019144 122019267 -33610853 + B3 SINE B2 89 216 0 5 1515 6123 60 29 18 chr4 122019343 122020142 -33609978 - RLTR13C2 LTR ERVK 0 808 1 5 1515 948 95 0 0 chr4 122020547 122020684 -33609436 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 5 1515 23 55 0 18 chr4 122020793 122020804 -33609316 + AT_rich Low_complexity Low_complexity 1 11 0 5 1515 380 303 102 10 chr4 122020804 122021001 -33609119 - B3 SINE B2 0 216 2 6 1515 23 55 0 18 chr4 122021001 122021044 -33609076 + AT_rich Low_complexity Low_complexity 1 43 0 6 1515 431 367 76 0 chr4 122021055 122021213 -33608907 - B3A SINE B2 -27 171 2 6 1515 27 49 0 0 chr4 122021213 122021254 -33608866 + AT_rich Low_complexity Low_complexity 1 41 0 6 1515 350 282 41 11 chr4 122021441 122021560 -33608560 - PB1D9 SINE Alu -31 118 2 6 1515 241 391 52 8 chr4 122021639 122021773 -33608347 + B1F SINE Alu 4 143 -6 6 1515 478 238 151 75 chr4 122021792 122021951 -33608169 + B3 SINE B2 5 175 -20 6 1515 446 180 10 0 chr4 122021955 122022055 -33608065 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 6 1515 624 321 50 14 chr4 122022068 122022349 -33607771 + B4 SINE B4 2 292 0 6 1515 561 290 104 0 chr4 122022452 122022635 -33607485 - B3 SINE B2 -13 203 2 6 1515 2836 87 2 17 chr4 122022887 122023307 -33606813 - BGLII LTR ERVK -7 414 1 7 1515 2798 219 40 47 chr4 122023308 122024231 -33605889 - RMER3D-int LTR ERVK -1 2841 1925 7 1515 451 245 34 27 chr4 122024250 122024397 -33605723 - RMER3D-int LTR ERVK -1163 1679 1532 7 1515 1725 193 18 12 chr4 122024429 122024920 -33605200 - RMER3D-int LTR ERVK -1309 1533 1015 7 1515 411 128 80 20 chr4 122024946 122025097 -33605023 + CT-rich Low_complexity Low_complexity 1 160 0 7 1515 694 194 60 17 chr4 122025097 122025409 -33604711 - RMER3D-int LTR ERVK -2005 837 359 7 1515 539 94 0 0 chr4 122025425 122025512 -33604608 - RMER3D-int LTR ERVK -2278 564 489 7 1515 2868 77 7 28 chr4 122025919 122026132 -33603988 - BGLII LTR ERVK 0 421 217 7 1515 3485 82 95 23 chr4 122026132 122026658 -33603462 + LTRIS2 LTR ERV1 1 564 0 7 1515 2868 77 7 28 chr4 122026658 122026874 -33603246 - BGLII LTR ERVK -205 216 1 7 1515 725 245 75 0 chr4 122027467 122027679 -33602441 - RLTR19-int LTR ERVK -1756 4381 4154 7 1515 390 302 30 42 chr4 122027681 122027847 -33602273 - RNLTR23 LTR ERVK 0 642 479 7 1516 730 243 19 23 chr4 122028136 122028351 -33601769 - RLTR19-int LTR ERVK -1977 4160 3947 7 1516 458 248 0 10 chr4 122028504 122028606 -33601514 + LSU-rRNA_Hsa rRNA rRNA 4202 4302 -733 7 1516 366 157 104 130 chr4 122028641 122028795 -33601325 - RLTR19-int LTR ERVK -2460 3677 3528 7 1516 2523 229 23 39 chr4 122028904 122029632 -33600488 + MYSERV6-int LTR ERVK 8241 8957 -2 7 1516 1079 247 49 21 chr4 122029639 122029966 -33600154 + RLTR15 LTR ERVK 6 341 -18 7 1516 272 246 29 0 chr4 122030056 122030125 -33599995 - RLTR15 LTR ERVK -108 251 181 8 1516 477 282 27 71 chr4 122030526 122030751 -33599369 - B3 SINE B2 0 216 2 8 1516 256 274 14 14 chr4 122030802 122030876 -33599244 + B1_Mur1 SINE Alu 75 148 -1 8 1516 693 290 40 0 chr4 122030883 122031059 -33599061 + B3 SINE B2 28 210 -6 8 1516 292 254 94 71 chr4 122031263 122031475 -33598645 + L1MD LINE L1 5539 5755 -487 8 1516 564 308 93 33 chr4 122031444 122031928 -33598192 + L1MB5 LINE L1 5653 6165 -9 8 1516 392 383 30 0 chr4 122031964 122032131 -33597989 + ID_B1 SINE B4 7 178 -46 8 1516 210 344 82 10 chr4 122032047 122032144 -33597976 + PB1D10 SINE Alu 14 117 0 8 1516 1513 171 87 0 chr4 122032233 122032532 -33597588 + ORR1A2 LTR MaLR 1 325 -2 8 1516 202 283 0 0 chr4 122033069 122033129 -33596991 + A-rich Low_complexity Low_complexity 1 60 0 8 1516 7660 52 3 1 chr4 122033639 122034905 -33595215 - L1Md_F2 LINE L1 -1 6581 5315 9 1516 367 49 73 12 chr4 122085070 122085152 -33544968 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 9 1516 358 336 76 0 chr4 122085160 122085291 -33544829 - ID_B1 SINE B4 -7 217 77 9 1516 232 276 40 0 chr4 122085382 122085458 -33544662 - RSINE1 SINE B4 -10 155 77 9 1516 329 274 245 22 chr4 122085787 122086056 -33544064 + L2 LINE L2 2485 2813 -606 9 1516 3388 105 10 20 chr4 122086063 122086883 -33543237 - L1Md_A LINE L1 -4142 1741 937 9 1516 24222 88 18 6 chr4 122086877 122090523 -33539597 + L1Md_F2 LINE L1 1897 5585 -298 9 1516 7879 59 2 1 chr4 122090525 122091516 -33538604 + L1Md_F2 LINE L1 5588 6579 -3 9 1516 648 0 0 0 chr4 122091667 122091739 -33538381 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 9 1516 236 230 52 94 chr4 122091785 122091881 -33538239 + B2_Mm2 SINE B2 1 92 -103 9 1516 228 35 0 0 chr4 122091966 122091995 -33538125 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1516 1161 69 17 0 chr4 122091996 122092169 -33537951 + (GA)n Simple_repeat Simple_repeat 2 177 0 1 1516 470 306 87 84 chr4 122092330 122092629 -33537491 + RLTR26 LTR ERVK 168 467 -175 1 1516 6185 42 1 5 chr4 122092978 122093743 -33536377 - L1Md_F3 LINE L1 -3 6581 5820 1 1516 339 233 27 0 chr4 122093743 122093816 -33536304 + B4A SINE B4 214 288 -4 1 1516 288 0 0 0 chr4 122093837 122093869 -33536251 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1516 779 266 118 24 chr4 122094276 122094530 -33535590 + ORR1D2 LTR MaLR 93 370 0 1 1516 379 245 32 11 chr4 122094563 122094658 -33535462 + PB1D10 SINE Alu 5 101 -16 1 1516 33 0 0 0 chr4 122094923 122094956 -33535164 + AT_rich Low_complexity Low_complexity 1 33 0 1 1516 602 218 110 23 chr4 122094961 122095216 -33534904 - RMER4B LTR ERVK -13 572 264 1 1516 713 267 42 29 chr4 122095302 122095622 -33534498 - RMER4B LTR ERVK -127 339 15 1 1516 618 304 27 0 chr4 122095623 122095771 -33534349 - B3 SINE B2 -15 201 50 1 1516 1132 282 107 11 chr4 122095808 122096246 -33533874 - RCHARR1 DNA MER1_type -478 496 17 1 1516 4249 231 21 54 chr4 122096318 122097381 -33532739 + RLTR25B LTR ERVK 1 1028 0 1 1516 423 0 0 0 chr4 122097441 122097488 -33532632 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1516 660 300 96 18 chr4 122097616 122098231 -33531889 + L1MB5 LINE L1 5503 6165 -9 1 1516 376 405 22 6 chr4 122098303 122098484 -33531636 + ID_B1 SINE B4 1 184 -40 1 1516 254 304 99 50 chr4 122098504 122098625 -33531495 + B1F1 SINE Alu 2 128 -21 1 1516 209 246 246 29 chr4 122099078 122099216 -33530904 + L2a LINE L2 1883 2050 -1369 1 1516 242 347 40 26 chr4 122099467 122099618 -33530502 + L2a LINE L2 2083 2235 -1184 1 1516 378 282 14 84 chr4 122099972 122100115 -33530005 + B1F SINE Alu 16 148 -1 1 1516 1023 101 0 51 chr4 122100131 122100287 -33529833 + B1_Mus1 SINE Alu 1 148 0 1 1516 357 131 0 0 chr4 122100288 122100349 -33529771 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1516 286 279 57 23 chr4 122100372 122100460 -33529660 + ID_B1 SINE B4 127 217 -7 1 1516 335 357 0 16 chr4 122100606 122100734 -33529386 + RSINE1 SINE B4 38 163 -2 1 1516 690 147 0 0 chr4 122100948 122101105 -33529015 + (TC)n Simple_repeat Simple_repeat 2 158 0 1 1516 271 323 8 16 chr4 122101118 122101247 -33528873 + CT-rich Low_complexity Low_complexity 1 128 0 1 1516 297 122 0 0 chr4 122101304 122101345 -33528775 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 1 1516 579 94 0 0 chr4 122101348 122101444 -33528676 + (CAAAA)n Simple_repeat Simple_repeat 2 97 0 1 1516 236 348 182 24 chr4 122102487 122102740 -33527380 + L2a LINE L2 2964 3256 -170 1 1516 4141 224 61 49 chr4 122102791 122102955 -33527165 - RMER12 LTR ERVK -111 1211 995 1 1516 531 69 0 0 chr4 122102955 122103027 -33527093 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1516 4141 224 61 49 chr4 122103027 122104059 -33526061 - RMER12 LTR ERVK -328 994 2 1 1516 2353 226 25 31 chr4 122104824 122105732 -33524388 - Lx2 LINE L1 -539 6458 5603 1 1516 3030 145 18 4 chr4 122105732 122106246 -33523874 + Lx2 LINE L1 6476 6996 -1 1 1516 224 310 52 0 chr4 122106412 122106470 -33523650 + MER5A DNA MER1_type 32 92 -97 1 1516 228 323 10 31 chr4 122106580 122106676 -33523444 + CT-rich Low_complexity Low_complexity 3 96 0 1 1516 440 18 0 17 chr4 122106686 122106744 -33523376 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1516 217 333 137 0 chr4 122106752 122106854 -33523266 - B1F1 SINE Alu -29 120 5 1 1516 567 240 78 0 chr4 122107563 122107692 -33522428 + B1_Mur3 SINE Alu 2 140 -9 1 1516 296 261 14 0 chr4 122107716 122107785 -33522335 + ID4_ SINE ID 2 71 -12 1 1516 361 305 9 9 chr4 122107787 122107893 -33522227 + B3 SINE B2 100 205 -11 1 1516 2141 122 15 3 chr4 122108321 122108651 -33521469 + MTB LTR MaLR 3 336 -64 1 1516 254 260 39 47 chr4 122108652 122108781 -33521339 + L1VL1 LINE L1 239 366 -6056 1 1516 381 276 44 7 chr4 122108876 122109011 -33521109 + L1_Mus1 LINE L1 664 803 -5813 1 1516 15100 157 6 26 chr4 122109019 122110341 -33519779 + L1_Mus1 LINE L1 725 1988 -3895 1 1516 390 21 0 0 chr4 122110341 122110388 -33519732 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 1 1516 15100 131 4 9 chr4 122110388 122110997 -33519123 + L1_Mus1 LINE L1 1989 2582 -3301 1 1516 2912 93 5 0 chr4 122110997 122111395 -33518725 + MTB LTR MaLR 1 400 0 1 1516 15100 138 39 19 chr4 122111395 122115217 -33514903 + L1_Mus1 LINE L1 2583 6566 -1 1 1516 32 26 0 0 chr4 122115217 122115256 -33514864 + AT_rich Low_complexity Low_complexity 1 39 0 1 1516 587 138 0 0 chr4 122115275 122115362 -33514758 + MTB_Mm LTR MaLR 314 400 0 1 1516 6890 107 48 4 chr4 122115362 122116413 -33513707 + MTB_Mm-int LTR MaLR 1 1098 0 1 1516 1245 149 5 0 chr4 122116413 122116608 -33513512 + MTB_Mm LTR MaLR 1 196 -211 1 1516 472 226 0 0 chr4 122116608 122116710 -33513410 + L1Md_F LINE L1 358 459 -6157 1 1516 30936 60 2 6 chr4 122116716 122120991 -33509129 + L1Md_F LINE L1 1270 5527 -356 1 1516 932 185 42 51 chr4 122120991 122121050 -33509070 + MTB LTR MaLR 141 193 -203 1 1516 7409 68 6 29 chr4 122121050 122122069 -33508051 + L1Md_F2 LINE L1 5587 6582 0 1 1516 987 99 8 9 chr4 122122069 122122225 -33507895 + MTB LTR MaLR 194 358 -42 1 1516 38383 18 18 6 chr4 122122234 122128497 -33501623 - L1Md_A LINE L1 -2 6580 232 1 1516 415 71 0 0 chr4 122128504 122128560 -33501560 + MTB LTR MaLR 345 400 0 1 1516 1547 217 51 37 chr4 122128884 122129149 -33500971 - Lx4B LINE L1 -20 7038 6769 1 1516 633 38 0 0 chr4 122129149 122129229 -33500891 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1516 1547 230 45 34 chr4 122129229 122129422 -33500698 - Lx4B LINE L1 -290 6768 6572 1 1516 806 230 149 22 chr4 122129417 122129693 -33500427 - L1_Mur2 LINE L1 -175 5702 5392 1 1516 555 43 0 0 chr4 122130146 122130216 -33499904 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1 1516 282 319 22 0 chr4 122130216 122130307 -33499813 - PB1D10 SINE Alu -12 105 13 1 1516 261 319 33 0 chr4 122130226 122130317 -33499803 - ID_B1 SINE B4 -48 176 83 1 1516 460 343 34 0 chr4 122130345 122130552 -33499568 - B3 SINE B2 0 216 3 1 1516 465 263 45 129 chr4 122130571 122130772 -33499348 - B3A SINE B2 -10 185 2 1 1516 684 56 0 0 chr4 122130778 122130867 -33499253 + (TTAG)n Simple_repeat Simple_repeat 4 92 0 1 1516 319 241 36 0 chr4 122131089 122131172 -33498948 - PB1D9 SINE Alu -25 95 10 1 1516 1768 54 0 0 chr4 122131196 122131420 -33498700 + L1Md_F2 LINE L1 5363 5586 -297 1 1516 7994 50 2 1 chr4 122131420 122132402 -33497718 + L1Md_F2 LINE L1 5587 6569 -13 1 1516 22 35 0 0 chr4 122132518 122132547 -33497573 + GC_rich Low_complexity Low_complexity 1 29 0 1 1516 224 345 76 0 chr4 122132756 122132875 -33497245 + L2 LINE L2 2477 2604 -815 1 1516 202 250 67 0 chr4 122133009 122133069 -33497051 - L2 LINE L2 -1467 1952 1889 1 1516 2658 146 43 6 chr4 122133667 122134136 -33495984 + Lx LINE L1 6165 6650 -4 1 1516 261 380 37 31 chr4 122134138 122134301 -33495819 - ID_B1 SINE B4 -55 169 6 1 1516 347 298 110 12 chr4 122134370 122134543 -33495577 - L1MB7 LINE L1 -9 6165 5976 1 1516 457 272 214 14 chr4 122134644 122135069 -33495051 - L1MB7 LINE L1 -355 5829 5320 1 1516 468 267 39 46 chr4 122135111 122135264 -33494856 - B3 SINE B2 0 216 65 1 1516 288 77 0 0 chr4 122135306 122135345 -33494775 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1 1516 325 274 20 31 chr4 122135345 122135443 -33494677 - B1F2 SINE Alu -13 136 40 1 1516 445 318 48 29 chr4 122135508 122135715 -33494405 + B3 SINE B2 2 212 -4 1 1516 208 200 16 16 chr4 122135812 122135873 -33494247 + T-rich Low_complexity Low_complexity 6 66 0 1 1516 243 0 0 0 chr4 122136021 122136048 -33494072 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1516 265 336 72 48 chr4 122136400 122136525 -33493595 - B1F SINE Alu -21 128 1 1 1516 309 432 17 6 chr4 122136543 122136720 -33493400 - ID_B1 SINE B4 -40 184 6 1 1516 415 302 101 23 chr4 122136797 122137310 -33492810 - L1MB5 LINE L1 -9 6165 5609 1 1516 3538 208 27 77 chr4 122137604 122138521 -33491599 - RLTR25B LTR ERVK -1 1027 157 1 1516 251 279 44 0 chr4 122138550 122138618 -33491502 + B3A SINE B2 90 160 -38 1 1516 370 341 33 14 chr4 122138654 122138865 -33491255 - B3 SINE B2 0 216 2 1 1516 437 256 15 53 chr4 122138910 122139042 -33491078 + B1_Mur1 SINE Alu 22 148 -1 1 1516 339 335 124 0 chr4 122139044 122139229 -33490891 + B3 SINE B2 2 209 -7 1 1516 1641 135 98 13 chr4 122139259 122139569 -33490551 + IAPLTR4_I LTR ERVK 1 465 -10 1 1516 5531 83 11 16 chr4 122139569 122140418 -33489702 + IAPLTR4_I LTR ERVK 18 952 -6629 1 1516 1184 210 105 52 chr4 122140530 122141021 -33489099 + RMER16-int LTR ERVK 251 668 -5469 1 1516 397 248 88 0 chr4 122141024 122141137 -33488983 + RMER16-int LTR ERVK 938 1060 -5077 1 1516 282 267 0 55 chr4 122141150 122141241 -33488879 + ETnERV3-int LTR ERVK 2454 2539 -4867 1 1516 6540 111 43 11 chr4 122141253 122142637 -33487483 + ETnERV3-int LTR ERVK 2735 4271 -3135 1 1516 467 178 9 36 chr4 122142642 122142753 -33487367 + MMETn-int LTR ERVK 2357 2464 -2380 1 1516 669 103 34 8 chr4 122142779 122142896 -33487224 + ETnERV3-int LTR ERVK 4530 4649 -2932 1 1516 1878 164 0 0 chr4 122143048 122143378 -33486742 + ETnERV3-int LTR ERVK 5098 5427 -2154 1 1516 4160 154 1 16 chr4 122143379 122144083 -33486037 + ETnERV3-int LTR ERVK 6108 6801 -20 1 1516 1646 133 119 10 chr4 122144083 122144394 -33485726 + IAPLTR4 LTR ERVK 1 345 0 1 1516 232 333 0 0 chr4 122144428 122144491 -33485629 + ID_B1 SINE B4 105 167 -57 1 1516 279 0 0 0 chr4 122144631 122144662 -33485458 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1516 777 22 0 0 chr4 122144900 122144991 -33485129 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1516 248 358 0 0 chr4 122145481 122145576 -33484544 - B1F SINE Alu -54 95 1 1 1516 234 325 37 37 chr4 122145587 122145721 -33484399 + L2 LINE L2 2103 2236 -1183 1 1516 270 316 74 58 chr4 122145835 122145956 -33484164 + ID_B1 SINE B4 102 224 0 1 1516 491 254 57 50 chr4 122145986 122146127 -33483993 + B1F SINE Alu 6 147 -2 1 1516 437 301 9 0 chr4 122146249 122146362 -33483758 + ID_B1 SINE B4 87 200 -24 1 1516 373 314 29 36 chr4 122146405 122146544 -33483576 + RSINE1 SINE B4 23 160 -5 1 1516 232 333 59 41 chr4 122146552 122146721 -33483399 + L2 LINE L2 2477 2648 -771 1 1516 222 317 162 0 chr4 122146738 122146880 -33483240 - L2 LINE L2 -1371 2048 1884 1 1516 2605 145 44 11 chr4 122147470 122147923 -33482197 + Lx LINE L1 6176 6643 -11 1 1516 313 387 40 35 chr4 122147931 122148105 -33482015 - ID_B1 SINE B4 -49 175 1 1 1516 635 312 93 18 chr4 122148169 122148783 -33481337 - L1MB5 LINE L1 -9 6165 5504 1 1516 477 307 12 80 chr4 122148944 122149107 -33481013 - B3 SINE B2 0 216 65 1 1516 526 202 15 68 chr4 122149141 122149274 -33480846 - B1_Mur1 SINE Alu -1 148 23 1 1516 382 338 25 5 chr4 122149317 122149519 -33480601 + B3 SINE B2 2 207 -9 1 1516 306 0 0 0 chr4 122149603 122149637 -33480483 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1516 285 235 11 86 chr4 122149640 122149733 -33480387 - B1_Mur4 SINE Alu -2 148 63 2 1516 491 0 17 0 chr4 122149821 122149880 -33480240 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1516 379 300 69 8 chr4 122150006 122150137 -33479983 + RCHARR1 DNA MER1_type 3 141 -833 2 1516 323 277 96 0 chr4 122150266 122150349 -33479771 - PB1D7 SINE Alu -29 91 1 2 1516 379 369 43 6 chr4 122150383 122150544 -33479576 - ID_B1 SINE B4 -56 168 2 2 1516 273 232 144 0 chr4 122150899 122151024 -33479096 - L1M4 LINE L1 -307 5867 5725 2 1516 1721 133 8 183 chr4 122151029 122151406 -33478714 + RLTR10C LTR ERVK 1 311 0 2 1516 538 111 33 0 chr4 122151406 122151496 -33478624 + MMERVK10C-int LTR ERVK 1 93 -7488 2 1516 240 235 0 19 chr4 122151496 122151548 -33478572 + RLTR27 LTR ERVK 222 272 -37 2 1516 6351 131 10 0 chr4 122151548 122152550 -33477570 + MMERVK10C-int LTR ERVK 222 1233 -6348 2 1516 9722 86 0 1 chr4 122152576 122153932 -33476188 + MMERVK10C-int LTR ERVK 3531 4884 -2697 2 1516 14806 93 3 5 chr4 122153930 122156375 -33473745 + MMERVK10C-int LTR ERVK 5215 7680 0 2 1516 1796 154 150 11 chr4 122156375 122156755 -33473365 + RLTR10C LTR ERVK 1 433 -3 2 1516 1882 207 12 74 chr4 122157158 122157650 -33472470 - RLTR25A LTR ERVK -1 1102 642 2 1516 3702 169 53 48 chr4 122157650 122158720 -33471400 + RLTR13D1 LTR ERVK 1 1023 0 2 1516 1819 267 76 56 chr4 122158720 122158992 -33471128 - RLTR25A LTR ERVK -454 649 341 2 189 1094 101 0 0 chr4 122158992 122159140 -33470980 + B1_Mus1 SINE Alu 1 148 0 2 1517 1819 267 76 56 chr4 122159140 122159485 -33470635 - RLTR25A LTR ERVK -763 340 19 2 1517 1037 285 134 27 chr4 122159573 122160013 -33470107 + RCHARR1 DNA MER1_type 14 505 -469 2 1517 575 320 99 6 chr4 122160013 122160191 -33469929 + B3 SINE B2 3 197 -19 2 1517 832 243 64 23 chr4 122160191 122160524 -33469596 + RMER4B LTR ERVK 1 353 -113 2 1517 866 229 255 7 chr4 122160596 122160878 -33469242 + RMER4B LTR ERVK 234 585 0 2 1517 25 0 0 0 chr4 122160881 122160906 -33469214 + AT_rich Low_complexity Low_complexity 1 25 0 2 1517 385 235 47 75 chr4 122161162 122161268 -33468852 - PB1D7 SINE Alu -3 117 15 2 1517 1026 279 87 20 chr4 122161314 122161661 -33468459 - ORR1D2 LTR MaLR 0 370 1 2 1517 672 24 0 0 chr4 122162023 122162105 -33468015 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1517 556 336 47 60 chr4 122162532 122162833 -33467287 - RLTR26 LTR ERVK -168 474 178 2 1517 300 305 16 95 chr4 122162992 122163181 -33466939 - B3A SINE B2 0 216 2 2 1517 209 83 28 0 chr4 122163185 122163221 -33466899 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 1517 211 196 22 0 chr4 122163331 122163377 -33466743 - B1_Mur4 SINE Alu -103 47 1 2 1517 192 77 0 0 chr4 122163430 122163456 -33466664 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2 1517 5868 13 0 0 chr4 122163458 122164154 -33465966 + L1Md_A LINE L1 4891 5586 -297 2 1517 8775 17 0 0 chr4 122164154 122165150 -33464970 + L1Md_A LINE L1 5587 6582 0 2 1517 508 315 36 95 chr4 122165157 122165378 -33464742 - B4A SINE B4 -82 210 3 2 1517 958 119 19 0 chr4 122165429 122165588 -33464532 - L1_Mus3 LINE L1 -7 6631 6470 2 1517 333 253 79 135 chr4 122165876 122166054 -33464066 - RLTR43A LTR ERVK -2 362 195 2 1517 213 302 0 19 chr4 122166621 122166675 -33463445 + PB1D9 SINE Alu 32 84 -36 2 1517 1600 153 57 72 chr4 122167208 122167540 -33462580 + ORR1A2 LTR MaLR 1 327 0 2 1517 642 41 31 0 chr4 122167656 122167754 -33462366 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 2 1517 420 389 19 0 chr4 122167795 122167957 -33462163 - ID_B1 SINE B4 -49 175 11 2 1517 598 235 82 16 chr4 122168064 122168246 -33461874 + RMER19C LTR ERVK 1 194 -417 2 1517 3445 218 21 11 chr4 122168246 122168962 -33461158 + MurERV4_19-int LTR ERVK 312 1035 -4745 2 1517 849 191 0 6 chr4 122168962 122169136 -33460984 + Lx LINE L1 6475 6647 -7 2 1517 3445 218 21 11 chr4 122169136 122169181 -33460939 + MurERV4_19-int LTR ERVK 1036 1080 -4700 2 1517 235 253 238 83 chr4 122169243 122169424 -33460696 - B3 SINE B2 -7 209 1 2 1517 280 356 38 9 chr4 122169497 122169602 -33460518 - PB1D10 SINE Alu -7 110 3 2 1517 513 0 0 0 chr4 122169767 122169824 -33460296 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1517 315 0 0 0 chr4 122169824 122169858 -33460262 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1517 427 349 17 29 chr4 122169924 122170098 -33460022 - B3A SINE B2 -23 175 4 2 1517 22 35 0 0 chr4 122170100 122170129 -33459991 + AT_rich Low_complexity Low_complexity 1 29 0 2 1517 381 383 13 13 chr4 122170134 122170290 -33459830 - RSINE1 SINE B4 -6 159 4 2 1517 316 329 191 4 chr4 122170342 122170577 -33459543 - L2 LINE L2 -656 2763 2485 2 1517 290 286 26 0 chr4 122170963 122171040 -33459080 + RSINE1 SINE B4 81 159 -6 2 1517 568 302 0 8 chr4 122171147 122171277 -33458843 + ID_B1 SINE B4 76 204 -20 2 1517 481 246 55 0 chr4 122171374 122171484 -33458636 + B1_Mur2 SINE Alu 22 137 -12 2 1517 238 220 0 20 chr4 122171533 122171584 -33458536 + B3A SINE B2 2 51 -147 2 1517 218 365 10 0 chr4 122172229 122172333 -33457787 + CT-rich Low_complexity Low_complexity 1 105 0 2 1517 1672 136 27 14 chr4 122173257 122173549 -33456571 + L1_Mus3 LINE L1 6342 6637 -1 2 1517 331 201 141 0 chr4 122173575 122173681 -33456439 + B1_Mur2 SINE Alu 11 129 -21 2 1517 261 174 0 0 chr4 122173712 122173781 -33456339 + A-rich Low_complexity Low_complexity 1 69 0 2 1517 280 318 55 103 chr4 122173800 122173965 -33456155 + RSINE1 SINE B4 7 163 -2 2 1517 24 32 0 0 chr4 122173965 122173996 -33456124 + AT_rich Low_complexity Low_complexity 1 31 0 2 1517 1666 199 13 3 chr4 122174029 122174342 -33455778 - ORR1A2 LTR MaLR -7 320 5 2 1517 381 306 106 26 chr4 122174364 122174515 -33455605 + B3 SINE B2 54 216 0 2 1517 696 333 68 0 chr4 122174560 122174794 -33455326 + B4A SINE B4 2 251 -41 2 1517 3145 106 4 13 chr4 122174850 122175309 -33454811 + L1_Mus2 LINE L1 6112 6566 0 2 1517 256 348 104 0 chr4 122175343 122175458 -33454662 - ID_B1 SINE B4 -16 208 82 2 1517 593 245 14 7 chr4 122175480 122175620 -33454500 - B1_Mm SINE Alu -6 141 1 2 1517 420 265 10 0 chr4 122176381 122176483 -33453637 + B1_Mur1 SINE Alu 26 128 -21 2 1517 544 111 10 10 chr4 122176488 122176588 -33453532 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 1517 261 222 0 0 chr4 122177492 122177555 -33452565 + L1_Mus4 LINE L1 5241 5303 -580 2 1517 1168 82 0 0 chr4 122177555 122177702 -33452418 + B1_Mus2 SINE Alu 1 147 0 2 1517 384 82 0 0 chr4 122177704 122177765 -33452355 + (CAAAAA)n Simple_repeat Simple_repeat 3 63 0 2 1517 363 159 15 24 chr4 122177765 122177876 -33452244 + L1_Mur3 LINE L1 5254 5364 -513 2 1517 221 324 131 62 chr4 122177976 122178236 -33451884 + L2a LINE L2 2979 3256 -170 2 1517 400 222 89 0 chr4 122178267 122178394 -33451726 - RMER12 LTR ERVK -29 1293 1097 2 1517 654 136 84 0 chr4 122178449 122178586 -33451534 + L1_Mus4 LINE L1 5566 5712 -171 2 1517 180 111 0 0 chr4 122179212 122179239 -33450881 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 2 1517 231 125 0 0 chr4 122179267 122179307 -33450813 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1517 264 77 0 0 chr4 122179370 122179409 -33450711 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 2 1517 408 20 0 0 chr4 122179569 122179618 -33450502 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1517 236 191 0 0 chr4 122179664 122179706 -33450414 - RSINE1 SINE B4 -87 78 37 2 1517 314 266 63 0 chr4 122179854 122179933 -33450187 - ID_B1 SINE B4 -7 217 134 2 1517 32308 83 5 4 chr4 122179940 122186121 -33443999 - L1Md_F2 LINE L1 0 6582 392 2 1517 305 363 26 0 chr4 122186151 122186264 -33443856 - B1F SINE Alu -11 138 23 2 1517 19625 131 19 8 chr4 122186585 122190723 -33439397 + L1_Mus1 LINE L1 2384 6567 0 2 1517 521 341 44 6 chr4 122190739 122190922 -33439198 + B3 SINE B2 27 216 0 2 1517 271 356 0 0 chr4 122190964 122191054 -33439066 + PB1D10 SINE Alu 13 102 -15 2 1517 723 81 0 0 chr4 122191057 122191156 -33438964 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 2 1517 260 122 41 0 chr4 122191159 122191208 -33438912 + G-rich Low_complexity Low_complexity 3 53 0 2 1517 1473 39 0 0 chr4 122191209 122191389 -33438731 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1517 1131 215 98 3 chr4 122191864 122192149 -33437971 + L1_Mur2 LINE L1 5392 5703 -174 2 1517 1601 206 59 33 chr4 122192171 122192330 -33437790 + Lx4B LINE L1 6602 6768 -290 2 1517 393 22 0 0 chr4 122192330 122192376 -33437744 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1517 1601 206 59 33 chr4 122192376 122192642 -33437478 + Lx4B LINE L1 6769 7038 -20 2 1517 411 269 25 25 chr4 122193384 122193502 -33436618 - B3 SINE B2 -6 210 93 2 1517 217 328 17 0 chr4 122193491 122193549 -33436571 - BC1_Mm scRNA scRNA -75 77 19 2 1517 664 217 28 14 chr4 122193584 122193729 -33436391 - B1_Mur3 SINE Alu -2 147 1 2 1517 1117 82 0 0 chr4 122194388 122194535 -33435585 + B1_Mus1 SINE Alu 2 148 0 2 1517 21 0 0 0 chr4 122194535 122194556 -33435564 + AT_rich Low_complexity Low_complexity 1 21 0 2 1517 295 41 41 0 chr4 122194558 122194607 -33435513 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 1517 704 93 9 0 chr4 122194777 122194843 -33435277 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1517 666 0 0 0 chr4 122194843 122194917 -33435203 + (GAA)n Simple_repeat Simple_repeat 3 76 0 2 1517 704 93 9 0 chr4 122194917 122194958 -33435162 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1517 1095 168 0 0 chr4 122195338 122195528 -33434592 - Lx2 LINE L1 -331 6666 6477 2 1517 3008 204 75 17 chr4 122195529 122196304 -33433816 + Lx2B LINE L1 5595 6423 -577 2 1517 4874 137 40 21 chr4 122196304 122197174 -33432946 + RMER17D LTR ERVK 1 887 -2 2 1517 3008 204 75 17 chr4 122197174 122197214 -33432906 + Lx2B LINE L1 6424 6457 -543 2 1517 4253 218 62 58 chr4 122197981 122198762 -33431358 + RMER12 LTR ERVK 1 786 -536 2 1517 300 27 0 0 chr4 122198762 122198799 -33431321 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1517 4253 218 62 58 chr4 122198799 122199222 -33430898 + RMER12 LTR ERVK 787 1210 -112 2 1517 213 328 130 65 chr4 122199274 122199535 -33430585 - L2a LINE L2 -170 3256 2979 2 1517 190 0 32 32 chr4 122200509 122200540 -33429580 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1517 426 146 0 0 chr4 122200701 122200797 -33429323 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1517 294 267 38 47 chr4 122200820 122200926 -33429194 + PB1D10 SINE Alu 13 117 0 2 1517 306 0 0 0 chr4 122201011 122201045 -33429075 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1517 216 271 16 63 chr4 122201219 122201282 -33428838 - ID_B1 SINE B4 -73 151 92 3 1517 339 85 0 0 chr4 122201398 122201445 -33428675 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 3 1517 967 103 7 52 chr4 122201445 122201599 -33428521 - B1_Mus1 SINE Alu -1 147 1 3 1517 503 277 34 47 chr4 122201619 122201767 -33428353 - B1F SINE Alu -1 148 3 3 1517 354 211 60 26 chr4 122202148 122202265 -33427855 - L2 LINE L2 -1217 2202 2082 3 1517 234 307 194 11 chr4 122202504 122202695 -33427425 - L2 LINE L2 -1369 2050 1825 3 1517 560 333 23 6 chr4 122203262 122203437 -33426683 - ID_B1 SINE B4 -46 178 1 3 1517 484 283 122 5 chr4 122203716 122204117 -33426003 - L1MB7 LINE L1 -234 5950 5503 3 1517 6561 121 2 2 chr4 122204150 122205794 -33424326 - L1_Mus1 LINE L1 0 6567 4923 3 1517 23625 103 9 13 chr4 122205794 122209580 -33420540 + L1Md_F2 LINE L1 1811 5584 -299 3 1517 7289 69 13 14 chr4 122209583 122209823 -33420297 + L1Md_F2 LINE L1 5588 5827 -755 3 1517 5746 93 82 7 chr4 122209823 122210687 -33419433 - RLTR13B3 LTR ERVK 0 929 1 3 1517 7289 69 13 14 chr4 122210687 122211427 -33418693 + L1Md_F2 LINE L1 5828 6567 -15 3 1517 6442 135 16 2 chr4 122211436 122212568 -33417552 - L1_Mus1 LINE L1 -945 4938 3791 3 1517 837 209 38 19 chr4 122212567 122212777 -33417343 - L1_Mus1 LINE L1 -6023 593 380 3 1517 200 273 0 0 chr4 122212858 122212913 -33417207 + (CATTT)n Simple_repeat Simple_repeat 1 55 0 3 1517 4508 197 77 58 chr4 122212974 122214057 -33416063 - RLTR25A LTR ERVK 0 1103 1 3 1517 1134 293 107 11 chr4 122214126 122214565 -33415555 + RCHARR1 DNA MER1_type 14 494 -480 3 1517 633 315 92 0 chr4 122214568 122214752 -33415368 + B3 SINE B2 1 201 -15 3 1517 686 286 30 17 chr4 122214756 122214991 -33415129 + RMER4B LTR ERVK 17 254 -331 3 1517 594 262 79 6 chr4 122215151 122215316 -33414804 + RMER4B LTR ERVK 263 439 -146 3 1517 431 140 40 70 chr4 122215302 122215402 -33414718 + RMER4B LTR ERVK 356 452 -14 3 1517 23 0 0 0 chr4 122215409 122215432 -33414688 + AT_rich Low_complexity Low_complexity 1 23 0 3 1517 320 250 86 18 chr4 122215687 122215797 -33414323 - B1F SINE Alu 0 127 10 3 1517 912 290 93 17 chr4 122215835 122216179 -33413941 - ORR1D2 LTR MaLR 0 370 1 3 1517 396 0 0 0 chr4 122216542 122216586 -33413534 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1517 321 286 0 0 chr4 122216607 122216684 -33413436 - B4A SINE B4 -4 288 212 3 1517 487 328 27 73 chr4 122217068 122217328 -33412792 - RLTR26 LTR ERVK -227 415 168 3 1517 234 375 64 21 chr4 122217485 122217673 -33412447 - B3A SINE B2 -1 197 2 3 1517 206 116 23 0 chr4 122217678 122217721 -33412399 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 3 1517 212 196 22 0 chr4 122217825 122217871 -33412249 - B1_Mur4 SINE Alu -103 47 1 3 1517 21 36 0 0 chr4 122217871 122217899 -33412221 + AT_rich Low_complexity Low_complexity 1 28 0 3 1517 505 316 33 117 chr4 122217909 122217924 -33412196 - B4A SINE B4 -69 223 209 3 1517 345 100 0 0 chr4 122217924 122217974 -33412146 + (ATG)n Simple_repeat Simple_repeat 2 51 0 3 1517 505 316 33 117 chr4 122217974 122218198 -33411922 - B4A SINE B4 -84 208 4 3 1517 972 89 19 6 chr4 122218252 122218410 -33411710 - L1_Mus3 LINE L1 -9 6629 6470 3 1517 432 236 41 71 chr4 122218691 122218860 -33411260 - RLTR43A LTR ERVK 0 364 201 3 1517 1709 144 68 13 chr4 122220033 122220343 -33409777 + ORR1A2 LTR MaLR 1 327 0 3 1517 577 25 25 0 chr4 122220458 122220537 -33409583 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 3 1517 426 371 19 0 chr4 122220590 122220749 -33409371 - ID_B1 SINE B4 -61 163 2 3 1517 657 243 73 11 chr4 122220847 122221039 -33409081 + RMER19C LTR ERVK 1 194 -417 3 1517 4621 201 9 14 chr4 122221039 122221758 -33408362 + MurERV4_19-int LTR ERVK 322 1039 -4741 3 1517 760 185 0 6 chr4 122221758 122221921 -33408199 + Lx LINE L1 6485 6646 -8 3 1517 4621 201 9 14 chr4 122221921 122222123 -33407997 + MurERV4_19-int LTR ERVK 1040 1238 -4542 3 1517 10722 168 23 39 chr4 122222119 122223184 -33406936 + MurERV4_19-int LTR ERVK 1624 2619 -3161 3 1517 6559 75 12 5 chr4 122223184 122224079 -33406041 + L1Md_F2 LINE L1 5678 6579 -3 3 1517 10722 168 23 39 chr4 122224079 122225342 -33404778 + MurERV4_19-int LTR ERVK 2620 3916 -1864 3 1517 2499 194 25 95 chr4 122225346 122226069 -33404051 + MurERV4_19-int LTR ERVK 4799 5482 -298 3 1517 1096 150 0 11 chr4 122226069 122226251 -33403869 + B2_Mm2 SINE B2 2 181 -14 3 1517 2499 194 25 95 chr4 122226251 122226378 -33403742 + MurERV4_19-int LTR ERVK 5483 5589 -191 3 1517 7529 223 48 24 chr4 122226397 122227539 -33402581 - Lx3C LINE L1 -2 6974 5796 3 1517 1329 88 16 0 chr4 122227539 122227731 -33402389 - L1Md_F2 LINE L1 -10 6572 6378 3 1517 7529 185 16 18 chr4 122227731 122229269 -33400851 - Lx3C LINE L1 -88 5798 4256 3 1517 1062 226 29 17 chr4 122229324 122229563 -33400557 + RMER19C LTR ERVK 370 611 0 3 1517 443 283 105 22 chr4 122229573 122229981 -33400139 - L1MB5 LINE L1 -40 6134 5693 3 1517 5316 96 14 3 chr4 122229997 122230763 -33399357 - L1_Mus1 LINE L1 -3 6564 5790 3 1517 27829 136 25 32 chr4 122230760 122236218 -33393902 - L1Md_F LINE L1 -2 5881 484 3 1517 3341 50 0 0 chr4 122236218 122236614 -33393506 - MTA_Mm LTR MaLR 0 396 1 3 1517 1419 223 123 167 chr4 122236614 122236872 -33393248 - L1Md_F LINE L1 -6155 483 220 3 1517 236 154 31 0 chr4 122236892 122236957 -33393163 + CT-rich Low_complexity Low_complexity 1 67 0 3 1517 332 339 89 17 chr4 122237260 122237440 -33392680 - B3 SINE B2 -3 195 3 3 1517 330 289 19 36 chr4 122237506 122237623 -33392497 - PB1D10 SINE Alu -1 126 2 3 1517 435 329 41 47 chr4 122237859 122238031 -33392089 - B3A SINE B2 -27 171 1 3 1517 21 57 0 0 chr4 122238031 122238066 -33392054 + AT_rich Low_complexity Low_complexity 1 35 0 3 1517 334 358 14 35 chr4 122238066 122238208 -33391912 - RSINE1 SINE B4 -6 159 21 3 1517 524 294 163 11 chr4 122238230 122238512 -33391608 - L2 LINE L2 -606 2813 2489 3 1517 405 278 11 83 chr4 122239113 122239260 -33390860 + B1_Mus1 SINE Alu 5 146 -2 3 1517 1072 122 0 0 chr4 122239427 122239574 -33390546 + B1_Mus1 SINE Alu 2 148 0 3 1517 1222 74 11 0 chr4 122239591 122239766 -33390354 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 3 1517 3086 200 51 25 chr4 122239879 122240529 -33389591 - RMER13B LTR ERVK 0 908 242 3 1517 1517 190 28 0 chr4 122240531 122240858 -33389262 - MusHAL1 LINE L1 -882 1830 1495 3 1517 268 196 0 0 chr4 122240865 122240911 -33389209 - B2_Mm2 SINE B2 -148 47 2 3 1517 310 259 38 21 chr4 122240913 122241017 -33389103 - B1_Mur1 SINE Alu -1 148 10 3 1517 428 289 41 78 chr4 122241048 122241266 -33388854 + B3 SINE B2 1 210 -6 3 1517 224 363 35 26 chr4 122241277 122241393 -33388727 - B3A SINE B2 -3 195 79 3 1517 417 20 0 0 chr4 122241459 122241509 -33388611 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1517 230 187 21 21 chr4 122242207 122242300 -33387820 + GA-rich Low_complexity Low_complexity 2 94 0 3 1517 858 172 189 5 chr4 122243010 122243232 -33386888 - RMER12 LTR ERVK -465 857 595 3 1517 495 271 0 18 chr4 122243352 122243461 -33386659 + B1F2 SINE Alu 25 131 -18 3 1517 24 32 0 0 chr4 122243466 122243497 -33386623 + AT_rich Low_complexity Low_complexity 1 31 0 3 1517 253 325 16 16 chr4 122244287 122244412 -33385708 + GA-rich Low_complexity Low_complexity 2 126 0 3 1517 237 33 0 0 chr4 122244430 122244460 -33385660 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1517 249 333 14 0 chr4 122244475 122244544 -33385576 - ID_B1 SINE B4 -73 151 82 3 1517 310 265 0 0 chr4 122244551 122244619 -33385501 - ID_B1 SINE B4 -6 218 151 3 1517 454 303 37 29 chr4 122244670 122244806 -33385314 - B1F SINE Alu -10 139 3 3 1517 253 309 95 0 chr4 122245737 122245821 -33384299 - B1F SINE Alu -57 92 1 3 1517 451 367 28 6 chr4 122245839 122246017 -33384103 - ID_B1 SINE B4 -40 184 3 3 1517 708 286 108 16 chr4 122246092 122246698 -33383422 - L1MB5 LINE L1 -11 6163 5503 3 1517 4398 204 73 55 chr4 122246906 122247989 -33382131 - RLTR25A LTR ERVK -1 1102 1 3 1517 1264 285 103 13 chr4 122248053 122248511 -33381609 + RCHARR1 DNA MER1_type 8 506 -468 3 1517 502 289 43 22 chr4 122248537 122248675 -33381445 + B3 SINE B2 49 189 -27 3 1517 698 286 14 9 chr4 122248689 122248908 -33381212 + RMER4B LTR ERVK 17 236 -349 3 1517 309 277 53 66 chr4 122248908 122249059 -33381061 + Lx4A LINE L1 6906 7054 -4 3 1517 630 236 102 7 chr4 122249092 122249350 -33380770 + RMER4B LTR ERVK 249 567 -18 3 1517 25 0 0 0 chr4 122249361 122249386 -33380734 + AT_rich Low_complexity Low_complexity 1 25 0 3 1517 376 277 21 0 chr4 122249663 122249757 -33380363 - PB1D10 SINE Alu -17 100 5 3 1517 1099 266 92 29 chr4 122249790 122250138 -33379982 - ORR1D2 LTR MaLR 0 370 1 3 1517 504 0 0 0 chr4 122250505 122250561 -33379559 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1517 522 348 6 6 chr4 122250578 122250737 -33379383 - B3A SINE B2 -34 164 6 3 1517 275 297 38 75 chr4 122250715 122250795 -33379325 - B4A SINE B4 -128 164 88 3 1517 15699 128 40 2 chr4 122250945 122254233 -33375887 - L1Md_F LINE L1 -2062 3821 404 3 1517 394 312 9 26 chr4 122254298 122254413 -33375707 - PB1D10 SINE Alu -3 114 2 3 1517 499 307 34 0 chr4 122254651 122254827 -33375293 - B3A SINE B2 -16 182 1 3 1517 519 336 0 0 chr4 122254874 122255011 -33375109 - RSINE1 SINE B4 -18 147 11 3 1517 251 217 139 57 chr4 122255140 122255262 -33374858 - L2 LINE L2 -803 2616 2485 3 1517 557 294 105 22 chr4 122255835 122256016 -33374104 - RLTR17 LTR ERVK -73 619 424 3 1517 431 291 18 71 chr4 122256016 122256186 -33373934 - RLTR17 LTR ERVK -421 271 111 3 1517 471 322 62 0 chr4 122256216 122256362 -33373758 + ID_B1 SINE B4 70 224 0 3 1517 310 320 46 23 chr4 122256454 122256585 -33373535 + B1_Mur2 SINE Alu 1 134 -15 3 1517 1131 78 0 0 chr4 122257985 122258127 -33371993 - B1_Mus2 SINE Alu -5 142 1 3 1517 627 229 46 0 chr4 122258352 122258483 -33371637 + B1_Mur3 SINE Alu 12 148 -1 3 1517 243 226 0 0 chr4 122258535 122258637 -33371483 + GA-rich Low_complexity Low_complexity 4 105 0 3 1517 353 355 7 68 chr4 122258664 122258812 -33371308 + RSINE1 SINE B4 25 163 -2 3 1517 222 276 78 13 chr4 122259620 122259697 -33370423 + MIRb SINE MIR 184 265 -3 3 1517 25 0 0 0 chr4 122261286 122261311 -33368809 + AT_rich Low_complexity Low_complexity 1 25 0 3 1517 562 299 45 0 chr4 122261494 122261651 -33368469 + B3A SINE B2 2 165 -33 3 1517 57 71 0 0 chr4 122261651 122261764 -33368356 + AT_rich Low_complexity Low_complexity 1 113 0 3 1517 375 339 40 11 chr4 122261773 122261949 -33368171 + L1M2 LINE L1 2849 3029 -3114 4 1517 2229 307 87 18 chr4 122261956 122262744 -33367376 + L1M2 LINE L1 3565 4406 -1737 4 1517 217 51 25 25 chr4 122262744 122262784 -33367336 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1517 2229 307 87 18 chr4 122262784 122263596 -33366524 + L1M2 LINE L1 4407 5274 -869 4 1517 429 299 110 7 chr4 122263921 122264066 -33366054 - RSINE1 SINE B4 -4 161 2 4 1517 702 104 8 25 chr4 122264185 122264303 -33365817 - RLTR9C LTR ERVK 0 393 278 4 1517 2295 83 33 0 chr4 122264303 122264639 -33365481 + IAPEz-int LTR ERVK 6133 6479 -2 4 1517 3555 36 13 114 chr4 122264641 122265169 -33364951 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1517 1194 93 0 21 chr4 122265400 122265586 -33364534 - RLTR13D1 LTR ERVK -156 650 469 4 1517 1707 175 50 23 chr4 122265593 122266213 -33363907 - ETnERV2-int LTR ERVK -2655 3153 2496 4 1517 3090 171 105 62 chr4 122266240 122267183 -33362937 - RLTR45-int LTR ERVK -4152 3092 2109 4 1517 596 227 35 72 chr4 122267183 122267495 -33362625 - ETnERV2-int LTR ERVK -2942 372 2 4 1517 2334 107 21 113 chr4 122267497 122267930 -33362190 - RLTR9C LTR ERVK 0 393 1 4 1517 2378 165 15 7 chr4 122268627 122269037 -33361083 - MTC LTR MaLR -8 413 1 4 1517 1195 7 0 0 chr4 122270807 122270949 -33359171 + L1Md_A LINE L1 6441 6582 0 4 1517 195 42 0 0 chr4 122270961 122270985 -33359135 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1517 248 0 31 0 chr4 122271376 122271408 -33358712 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1517 31 0 0 0 chr4 122271744 122271775 -33358345 + AT_rich Low_complexity Low_complexity 1 31 0 4 1517 376 164 45 0 chr4 122272393 122272503 -33357617 + (TCTA)n Simple_repeat Simple_repeat 1 115 0 4 1517 1090 220 208 24 chr4 122272512 122272844 -33357276 + MTD LTR MaLR 18 403 -16 4 1517 6709 50 6 0 chr4 122274147 122274975 -33355145 - L1Md_F2 LINE L1 0 6582 5750 4 1517 771 278 70 33 chr4 122274997 122275425 -33354695 + L1M4 LINE L1 4046 4489 -1657 4 1517 25421 114 9 18 chr4 122275436 122280944 -33349176 + L1_Mus1 LINE L1 217 5669 -214 4 1517 5180 104 3 8 chr4 122280944 122281689 -33348431 + L1_Mus1 LINE L1 5826 6566 -1 4 1517 529 271 0 31 chr4 122281689 122281883 -33348237 + L1M4 LINE L1 4474 4661 -1485 4 1517 234 290 268 12 chr4 122282266 122282430 -33347690 - ID_B1 SINE B4 -18 206 1 4 1517 2991 63 7 36 chr4 122282740 122283152 -33346968 + MTB LTR MaLR 1 400 0 4 1517 245 259 0 17 chr4 122283466 122283525 -33346595 + GA-rich Low_complexity Low_complexity 3 60 0 4 1517 6948 135 19 0 chr4 122283688 122285051 -33345069 - L1_Mus3 LINE L1 -580 6058 4680 4 1517 4072 96 23 27 chr4 122285051 122285652 -33344468 + L1_Mus3 LINE L1 6040 6638 0 4 1517 261 304 0 37 chr4 122286127 122286209 -33343911 - Kanga1d DNA Tc2 -6 603 525 4 1517 2675 118 4 16 chr4 122286476 122287066 -33343054 - L1VL4 LINE L1 -2223 1336 753 4 1517 2768 121 2 0 chr4 122287089 122287487 -33342633 - L1Md_F2 LINE L1 0 6567 6169 4 189 30367 101 17 4 chr4 122287492 122293117 -33337003 - L1Md_F2 LINE L1 -502 6080 380 4 1518 2119 234 22 14 chr4 122293121 122293675 -33336445 - L1VL4 LINE L1 -5536 766 209 4 1518 284 284 75 47 chr4 122293715 122293822 -33336298 + B1F1 SINE Alu 9 118 -31 4 1518 2476 137 66 2 chr4 122294126 122294552 -33335568 - Lx2 LINE L1 -1 6996 6544 4 1518 2364 166 41 12 chr4 122294554 122295061 -33335059 + Lx2 LINE L1 5998 6519 -478 4 1518 183 298 273 0 chr4 122295232 122295353 -33334767 + L2a LINE L2 1883 2036 -1383 4 1518 188 316 259 25 chr4 122295553 122295754 -33334366 + L2a LINE L2 2091 2338 -1081 4 1518 583 250 43 14 chr4 122296001 122296139 -33333981 + B1F SINE Alu 6 147 -2 4 1518 626 264 0 0 chr4 122296338 122296467 -33333653 + B3 SINE B2 1 129 -87 4 1518 278 314 48 71 chr4 122296482 122296650 -33333470 - RLTR43A LTR ERVK 0 364 201 4 1518 325 274 0 47 chr4 122297092 122297199 -33332921 - PB1D10 SINE Alu 0 117 16 4 1518 418 161 0 18 chr4 122297224 122297338 -33332782 + CT-rich Low_complexity Low_complexity 2 113 0 4 1518 314 173 0 85 chr4 122298195 122298277 -33331843 - PB1D10 SINE Alu -18 99 25 4 1518 185 256 77 11 chr4 122298520 122298611 -33331509 + L2a LINE L2 3245 3341 -85 4 1518 696 198 8 0 chr4 122299689 122299941 -33330179 + CT-rich Low_complexity Low_complexity 1 254 0 4 1518 448 254 109 0 chr4 122299948 122300058 -33330062 - B1_Mur1 SINE Alu -27 122 1 4 1518 32349 80 4 0 chr4 122300075 122306049 -33324071 - L1Md_F2 LINE L1 -1 6581 586 4 1518 978 209 20 10 chr4 122306340 122306538 -33323582 + RLTR16 LTR ERVK 8 207 -298 4 1518 613 234 18 48 chr4 122306574 122306803 -33323317 + RMER3D-int LTR ERVK 1119 1340 -1502 4 1518 1801 172 36 0 chr4 122306803 122307111 -33323009 + ORR1A2 LTR MaLR 1 319 -8 4 1518 3036 181 39 10 chr4 122307116 122307703 -33322417 + ORR1A2-int LTR MaLR 2 605 -1187 4 1518 585 229 0 0 chr4 122307657 122307762 -33322358 + MT2B LTR ERVL 157 261 -340 4 1518 1400 141 0 0 chr4 122307754 122307967 -33322153 + ORR1A2-int LTR MaLR 1751 1963 0 4 1518 2166 135 3 0 chr4 122307967 122308293 -33321827 + ORR1A2 LTR MaLR 1 327 0 4 1518 549 216 0 26 chr4 122308358 122308510 -33321610 + MYSERV16_I-int LTR ERVK 288 435 -1891 4 1518 9976 87 2 5 chr4 122308573 122310667 -33319453 - L1Md_F2 LINE L1 -6 6576 4489 4 1518 503 184 18 18 chr4 122310672 122310783 -33319337 + MYSERV16_I-int LTR ERVK 1382 1492 -1350 4 1518 5253 188 56 30 chr4 122310841 122311571 -33318549 + MYSERV16_I-int LTR ERVK 1067 2103 -739 4 1518 342 0 0 0 chr4 122311571 122311609 -33318511 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 4 1518 5253 166 71 2 chr4 122311609 122312360 -33317760 + MYSERV16_I-int LTR ERVK 1505 2323 -3 4 1518 2128 206 42 27 chr4 122312367 122312841 -33317279 + RLTR16 LTR ERVK 7 487 -18 4 1518 601 243 21 7 chr4 122313316 122313461 -33316659 + B1_Mus2 SINE Alu 1 147 0 4 1518 5192 122 23 66 chr4 122313979 122314924 -33315196 + RMER17A2 LTR ERVK 1 905 -1 4 1518 287 352 94 39 chr4 122316097 122316224 -33313896 - B1_Mur2 SINE Alu -15 134 1 4 1518 269 327 76 76 chr4 122316224 122316311 -33313809 - MT2B LTR ERVL -444 157 71 4 1518 535 286 30 45 chr4 122316310 122316526 -33313594 - ID_B1 SINE B4 -68 224 16 4 1518 633 306 43 68 chr4 122316478 122316685 -33313435 + B4A SINE B4 12 213 -79 4 1518 237 108 0 0 chr4 122316692 122316729 -33313391 + (CAT)n Simple_repeat Simple_repeat 3 39 0 4 1518 21 36 0 0 chr4 122316754 122316782 -33313338 + AT_rich Low_complexity Low_complexity 1 28 0 4 1518 473 214 214 0 chr4 122316789 122316906 -33313214 + B1_Mus2 SINE Alu 5 146 -1 4 1518 405 0 0 0 chr4 122316942 122316987 -33313133 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 4 1518 699 311 15 15 chr4 122317000 122317196 -33312924 + B3A SINE B2 2 197 -1 4 1518 21 0 0 0 chr4 122317196 122317217 -33312903 + AT_rich Low_complexity Low_complexity 1 21 0 4 1518 246 243 0 125 chr4 122317217 122317297 -33312823 + B4A SINE B4 212 281 -11 4 1518 297 162 0 0 chr4 122317346 122317414 -33312706 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1518 1159 241 94 15 chr4 122317783 122318124 -33311996 + ORR1D2 LTR MaLR 1 368 -2 4 1518 250 315 0 0 chr4 122318157 122318211 -33311909 + B1F1 SINE Alu 3 56 -93 4 1518 4585 119 5 16 chr4 122318211 122318452 -33311668 + L1VL4 LINE L1 244 483 -5819 4 1518 1007 125 0 0 chr4 122318452 122318596 -33311524 + B1_Mus1 SINE Alu 1 144 -4 4 1518 924 27 0 0 chr4 122318596 122318707 -33311413 + (GA)n Simple_repeat Simple_repeat 1 111 0 4 1518 9113 112 15 8 chr4 122318707 122320651 -33309469 + L1VL4 LINE L1 484 2439 -1120 4 1518 27 49 0 0 chr4 122320696 122320737 -33309383 + AT_rich Low_complexity Low_complexity 1 41 0 4 1518 189 94 0 0 chr4 122321042 122321074 -33309046 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1518 340 208 86 38 chr4 122321150 122321255 -33308865 - RMER4B LTR ERVK 0 466 357 4 1518 1567 202 103 26 chr4 122321228 122321645 -33308475 - RMER4B LTR ERVK -120 465 17 4 1518 1111 277 132 23 chr4 122321624 122321649 -33308471 - RCHARR1 DNA MER1_type -451 523 495 4 1518 646 264 98 6 chr4 122321649 122321832 -33308288 - B3 SINE B2 -15 201 2 4 1518 1111 277 132 23 chr4 122321832 122322276 -33307844 - RCHARR1 DNA MER1_type -480 494 3 4 1518 648 74 0 0 chr4 122322412 122322507 -33307613 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 1518 339 189 82 82 chr4 122322585 122322683 -33307437 + B1_Mur4 SINE Alu 53 150 0 4 1518 590 0 14 0 chr4 122323334 122323404 -33306716 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1518 383 302 13 26 chr4 122323970 122324123 -33305997 + L2a LINE L2 2086 2236 -1183 4 1518 273 286 65 28 chr4 122324274 122324382 -33305738 + PB1D10 SINE Alu 1 112 -5 4 1518 223 246 181 42 chr4 122324490 122324562 -33305558 + B1F SINE Alu 13 94 -55 4 1518 246 229 164 0 chr4 122324502 122324563 -33305557 + ID_B1 SINE B4 103 173 -51 4 1518 412 302 0 19 chr4 122324547 122324655 -33305465 - B1F2 SINE Alu -19 130 25 4 1518 257 300 214 17 chr4 122324806 122324979 -33305141 + L2a LINE L2 2956 3162 -264 4 1518 475 241 77 8 chr4 122325591 122325708 -33304412 - B3 SINE B2 -90 126 2 4 1518 498 354 13 0 chr4 122325761 122325919 -33304201 - B3A SINE B2 -37 161 2 4 1518 318 115 0 0 chr4 122325930 122325982 -33304138 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 4 1518 355 233 66 6 chr4 122326175 122326275 -33303845 - PB1D9 SINE Alu 0 120 17 4 1518 326 353 60 0 chr4 122326344 122326460 -33303660 + B1F2 SINE Alu 6 128 -21 4 1518 380 311 41 8 chr4 122326474 122326597 -33303523 + ID_B1 SINE B4 84 210 -14 4 1518 774 259 122 27 chr4 122326602 122326824 -33303296 - B4A SINE B4 -46 246 4 4 1518 1147 82 0 0 chr4 122326834 122326980 -33303140 - B1_Mus1 SINE Alu -2 146 1 4 1518 26 50 0 0 chr4 122327006 122327046 -33303074 + AT_rich Low_complexity Low_complexity 1 40 0 4 1518 434 246 25 50 chr4 122327060 122327180 -33302940 + B4A SINE B4 130 246 -46 4 1518 367 318 0 0 chr4 122328011 122328121 -33301999 - RSINE1 SINE B4 -42 123 14 4 1518 183 100 0 0 chr4 122328130 122328160 -33301960 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4 1518 541 275 42 0 chr4 122328160 122328302 -33301818 - B1_Mur4 SINE Alu -2 148 1 4 1518 300 326 97 21 chr4 122328400 122328544 -33301576 + ID_B1 SINE B4 23 177 -47 4 1518 239 269 106 65 chr4 122328570 122328693 -33301427 + PB1D10 SINE Alu 1 128 -21 4 1518 254 294 189 0 chr4 122329143 122329296 -33300824 + L2a LINE L2 1884 2065 -1354 4 1518 306 298 11 92 chr4 122329550 122329735 -33300385 + L2a LINE L2 2095 2264 -1155 4 1518 299 289 40 20 chr4 122329973 122330072 -33300048 + ID_B1 SINE B4 123 223 -1 4 1518 495 306 8 0 chr4 122330074 122330195 -33299925 + ID_B1 SINE B4 82 203 -21 4 1518 222 143 48 0 chr4 122330328 122330391 -33299729 + CT-rich Low_complexity Low_complexity 2 67 0 4 1518 304 311 101 42 chr4 122330391 122330629 -33299491 - L1MEg LINE L1 -4955 1129 878 4 1518 423 81 0 0 chr4 122330677 122330722 -33299398 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1518 405 0 0 0 chr4 122330722 122330767 -33299353 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1518 423 81 0 0 chr4 122330767 122330783 -33299337 + (TC)n Simple_repeat Simple_repeat 1 16 0 4 1518 260 83 21 0 chr4 122330783 122330831 -33299289 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1518 301 284 147 58 chr4 122330841 122331133 -33298987 + L2a LINE L2 2478 2795 -624 4 1518 285 330 9 28 chr4 122331641 122331747 -33298373 - B1F2 SINE Alu -18 131 28 5 1518 1357 36 0 0 chr4 122331890 122332057 -33298063 - L1Md_A LINE L1 -1 6581 6415 5 1518 345 322 178 12 chr4 122332076 122332418 -33297702 + L2a LINE L2 2953 3351 -75 4 1518 450 0 0 0 chr4 122333515 122333565 -33296555 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1518 483 18 0 0 chr4 122333565 122333620 -33296500 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1518 631 254 7 7 chr4 122333949 122334092 -33296028 + B1_Mus1 SINE Alu 6 148 0 5 1518 481 360 0 35 chr4 122335756 122335900 -33294220 - B1_Mus2 SINE Alu -4 143 5 5 1518 340 317 25 0 chr4 122336005 122336125 -33293995 - ID_B1 SINE B4 0 224 102 5 1518 333 316 150 65 chr4 122336498 122336958 -33293162 + L2 LINE L2 2312 2810 -609 5 1518 234 337 12 52 chr4 122336965 122337137 -33292983 + RSINE1 SINE B4 1 165 0 5 1518 649 112 17 17 chr4 122337152 122337270 -33292850 + (TATG)n Simple_repeat Simple_repeat 2 119 0 5 1518 550 314 25 0 chr4 122337308 122337467 -33292653 + B3A SINE B2 2 164 -34 5 1518 513 0 0 0 chr4 122337467 122337524 -33292596 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1518 326 361 0 48 chr4 122337762 122337887 -33292233 + PB1D7 SINE Alu 2 120 0 5 1518 406 323 14 78 chr4 122337949 122338090 -33292030 + B3 SINE B2 1 132 -84 5 1518 378 390 18 55 chr4 122338399 122338616 -33291504 + B4A SINE B4 2 210 -82 5 1518 210 289 0 0 chr4 122338619 122338664 -33291456 + (TCG)n Simple_repeat Simple_repeat 3 47 0 5 1518 248 241 229 17 chr4 122338727 122338845 -33291275 + B1_Mus1 SINE Alu 6 148 0 5 1518 642 328 40 0 chr4 122338896 122339070 -33291050 + B3A SINE B2 2 182 -16 5 1518 652 292 24 5 chr4 122339446 122339659 -33290461 + ORR1D2 LTR MaLR 6 222 -148 5 1518 1845 116 86 0 chr4 122339664 122339965 -33290155 - IAPEY3_LTR LTR ERVK -5 327 1 5 1518 6664 58 47 0 chr4 122339965 122340861 -33289259 - IAPEY3-int LTR ERVK 0 7680 6743 5 1518 3133 93 4 13 chr4 122340851 122341309 -33288811 - IAPEY3-int LTR ERVK -1367 6214 5761 5 1518 3024 97 14 16 chr4 122341300 122341741 -33288379 - IAPEY3-int LTR ERVK -1939 5642 5203 5 1518 767 85 17 8 chr4 122342020 122342139 -33287981 - IAPEY3-int LTR ERVK -2932 4649 4530 5 1518 486 179 21 0 chr4 122342156 122342274 -33287846 - MMETn-int LTR ERVK -2380 2464 2357 5 1518 2166 147 63 3 chr4 122342276 122342890 -33287230 - ETnERV2-int LTR ERVK -3135 4271 3567 5 1518 575 219 0 0 chr4 122342916 122343035 -33287085 - ETnERV2-int LTR ERVK -4653 2753 2635 5 1518 455 221 88 0 chr4 122343151 122343264 -33286856 - RMER16-int LTR ERVK -5077 1060 938 5 1518 1682 181 161 56 chr4 122343269 122343784 -33286336 - RMER16-int LTR ERVK -4587 819 251 5 1518 309 164 0 103 chr4 122343896 122344012 -33286108 - IAPEY3-int LTR ERVK -6629 952 849 5 1518 711 73 0 0 chr4 122344081 122344177 -33285943 - IAPEY3-int LTR ERVK -7178 502 407 5 1518 1097 83 13 0 chr4 122344176 122344333 -33285787 - IAPEY3-int LTR ERVK -7521 159 1 5 1518 1789 120 86 7 chr4 122344337 122344640 -33285480 - IAPEY3_LTR LTR ERVK -5 327 1 5 1518 390 274 29 0 chr4 122344802 122344904 -33285216 + PB1D10 SINE Alu 5 109 -8 5 1518 1708 203 199 10 chr4 122345194 122345686 -33284434 - RMER4B LTR ERVK 0 585 1 5 1518 681 261 114 0 chr4 122345686 122345862 -33284258 - B3 SINE B2 -19 197 2 5 1518 1117 251 191 10 chr4 122345865 122346283 -33283837 - RCHARR1 DNA MER1_type -478 496 3 5 1518 332 254 81 48 chr4 122346297 122346421 -33283699 + L1MB5 LINE L1 5196 5323 -820 5 1518 1190 210 0 0 chr4 122346423 122346671 -33283449 - L1_Mur2 LINE L1 -2027 3850 3603 5 1518 711 163 4 154 chr4 122346661 122346803 -33283317 - L1_Mur2 LINE L1 -2418 3468 3333 5 1518 1163 75 0 0 chr4 122346803 122346950 -33283170 + B1_Mm SINE Alu 1 147 0 5 1518 711 163 4 154 chr4 122346950 122347054 -33283066 - L1_Mur2 LINE L1 -2554 3332 3259 5 1518 447 19 0 0 chr4 122347064 122347116 -33283004 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1518 236 267 26 39 chr4 122347179 122347257 -33282863 + B1_Mur4 SINE Alu 53 129 -21 5 1518 315 387 56 0 chr4 122347304 122347446 -33282674 + B3 SINE B2 42 191 -25 5 1518 556 307 19 10 chr4 122347462 122347669 -33282451 - B3 SINE B2 -5 211 3 5 1518 474 286 8 32 chr4 122347711 122347834 -33282286 + B1_Mur1 SINE Alu 19 138 -11 5 1518 667 248 13 7 chr4 122347875 122348025 -33282095 + B3 SINE B2 66 216 0 5 1518 345 227 76 0 chr4 122348179 122348298 -33281822 + L1MB5 LINE L1 5503 5630 -553 5 1518 322 335 106 0 chr4 122348300 122348479 -33281641 + L1MB5 LINE L1 5968 6165 -9 5 1518 471 344 26 21 chr4 122348552 122348742 -33281378 + ID_B1 SINE B4 2 192 -32 5 1518 3241 214 55 24 chr4 122348848 122349656 -33280464 + RLTR22_Mur LTR ERVK 1 833 -1015 5 1518 988 227 70 4 chr4 122349810 122350053 -33280067 + RLTR22_Mur LTR ERVK 1590 1848 0 5 1518 217 256 216 8 chr4 122350540 122350674 -33279446 + L2 LINE L2 1883 2044 -1375 5 1518 216 291 35 26 chr4 122350950 122351063 -33279057 + L2 LINE L2 2091 2204 -1215 5 1518 603 203 42 0 chr4 122351102 122351220 -33278900 + ETnERV2-int LTR ERVK 7070 7192 -214 5 1518 270 267 40 13 chr4 122351737 122351813 -33278307 + ID_B1 SINE B4 80 157 -67 5 1518 284 311 14 0 chr4 122351753 122351827 -33278293 + PB1D10 SINE Alu 16 90 -27 5 1518 210 340 75 28 chr4 122351792 122351898 -33278222 + ID_B1 SINE B4 49 159 -65 5 1518 473 294 0 45 chr4 122351921 122352053 -33278067 + B1F SINE Alu 22 147 -2 5 1518 316 347 33 25 chr4 122352169 122352290 -33277830 + ID_B1 SINE B4 82 203 -21 5 1518 412 327 0 0 chr4 122352334 122352441 -33277679 + RSINE1 SINE B4 28 134 -31 5 1518 441 54 0 0 chr4 122352447 122352503 -33277617 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1518 250 264 0 0 chr4 122353027 122353099 -33277021 - Lx5 LINE L1 -438 6612 6541 5 1518 21 0 0 0 chr4 122353426 122353447 -33276673 + AT_rich Low_complexity Low_complexity 1 21 0 5 1518 499 271 0 18 chr4 122353447 122353556 -33276564 - B1F2 SINE Alu -18 131 25 5 1518 1513 204 67 9 chr4 122354725 122355197 -33274923 - Lx4B LINE L1 -3 7055 6463 5 1518 898 153 18 0 chr4 122355200 122355363 -33274757 + Lx LINE L1 5778 5943 -711 5 1518 269 291 27 80 chr4 122355609 122355721 -33274399 + MT2B LTR ERVL 152 257 -344 5 1518 647 217 0 15 chr4 122355637 122355768 -33274352 + B1_Mus1 SINE Alu 20 148 0 5 1518 350 208 13 65 chr4 122355783 122355860 -33274260 + ID4_ SINE ID 6 78 -5 5 1518 1083 241 10 93 chr4 122355966 122356268 -33273852 + RMER19C LTR ERVK 3 279 -332 5 1518 1997 180 6 11 chr4 122356286 122356640 -33273480 - RLTR17 LTR ERVK -324 368 17 5 1518 1253 169 12 16 chr4 122356668 122356915 -33273205 - L1_Mus3 LINE L1 0 6638 6393 5 1518 351 0 0 0 chr4 122356958 122356997 -33273123 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1518 36739 45 23 4 chr4 122357038 122363184 -33266936 - L1Md_F2 LINE L1 -3 6579 353 5 1518 2579 195 37 59 chr4 122363203 122364302 -33265818 - L1Md_F LINE L1 -4465 1418 352 5 1518 376 246 23 23 chr4 122364309 122364442 -33265678 - L1VL2 LINE L1 -6142 193 61 5 1518 600 203 0 0 chr4 122364442 122364565 -33265555 - MurERV4_19-int LTR ERVK -3205 2575 2453 5 1518 364 206 0 0 chr4 122364565 122364633 -33265487 - B1_Mus1 SINE Alu -58 90 23 5 1518 269 239 29 29 chr4 122365354 122365423 -33264697 + PB1D7 SINE Alu 25 93 -27 5 1518 272 164 0 32 chr4 122365455 122365518 -33264602 + GA-rich Low_complexity Low_complexity 1 61 0 5 1518 1526 239 33 4 chr4 122365903 122366392 -33263728 + Lx4B LINE L1 6439 7041 -17 5 1518 183 410 99 0 chr4 122367132 122367354 -33262766 - L2a LINE L2 -101 3325 3082 5 1518 1552 27 0 0 chr4 122367376 122367563 -33262557 + L1Md_T LINE L1 5400 5586 -297 5 1518 8497 32 0 0 chr4 122367563 122368559 -33261561 + L1Md_T LINE L1 5587 6582 0 5 1518 567 243 0 18 chr4 122368777 122368886 -33261234 + B1F2 SINE Alu 25 131 -18 5 1518 21 57 0 0 chr4 122368886 122368921 -33261199 + AT_rich Low_complexity Low_complexity 1 35 0 5 1518 240 278 0 0 chr4 122369230 122369302 -33260818 + Lx5 LINE L1 6541 6612 -438 5 1518 456 32 0 31 chr4 122369316 122369428 -33260692 + L1Md_T LINE L1 6506 6582 0 5 1518 1947 68 0 0 chr4 122369464 122369729 -33260391 - L1_Mus1 LINE L1 -549 6017 5753 5 1518 4041 91 2 0 chr4 122369730 122370270 -33259850 + L1_Mus1 LINE L1 6027 6567 0 5 1518 250 306 148 76 chr4 122370519 122370809 -33259311 - L2a LINE L2 -630 2789 2479 5 1518 495 132 47 0 chr4 122370830 122370959 -33259161 + (CAGA)n Simple_repeat Simple_repeat 2 136 0 5 1518 300 284 38 29 chr4 122371015 122371120 -33259000 + PB1D10 SINE Alu 12 117 0 5 1518 306 0 0 0 chr4 122371151 122371185 -33258935 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1518 358 357 0 0 chr4 122371191 122371303 -33258817 - RSINE1 SINE B4 -31 134 23 5 1518 328 376 22 8 chr4 122371346 122371480 -33258640 - ID_B1 SINE B4 -25 199 64 5 1518 410 298 36 44 chr4 122371577 122371714 -33258406 - B1F SINE Alu -2 147 12 5 1518 217 330 63 11 chr4 122371737 122371832 -33258288 - ID_B1 SINE B4 -71 153 54 5 1518 298 284 14 0 chr4 122371802 122371876 -33258244 - PB1D10 SINE Alu -27 90 16 5 1518 249 340 21 14 chr4 122372041 122372184 -33257936 - L2a LINE L2 -1185 2234 2091 5 1518 928 225 106 4 chr4 122373069 122373314 -33256806 - RLTR22_Mur LTR ERVK 0 1848 1579 5 1518 1243 195 67 30 chr4 122373474 122373802 -33256318 - RLTR22_Mur LTR ERVK -1036 812 473 5 1518 7887 50 1 1 chr4 122373802 122375510 -33254610 - L1Md_F2 LINE L1 -13 6569 4862 5 1518 2431 204 22 10 chr4 122375510 122376015 -33254105 - RLTR22_Mur LTR ERVK -1337 511 1 5 1518 616 242 31 38 chr4 122376385 122376544 -33253576 - B3 SINE B2 0 216 59 5 1518 5297 129 77 14 chr4 122376642 122376894 -33253226 + L1_Mus3 LINE L1 5616 5864 -774 5 1518 441 0 0 0 chr4 122376894 122376943 -33253177 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1518 5297 129 77 14 chr4 122376943 122377641 -33252479 + L1_Mus3 LINE L1 5865 6625 -13 5 1518 265 253 3 11 chr4 122377905 122377968 -33252152 - B1F1 SINE Alu -82 65 5 5 1518 1070 266 92 12 chr4 122378001 122378339 -33251781 - ORR1D2 LTR MaLR 0 370 6 5 1518 244 214 113 82 chr4 122378455 122378552 -33251568 + RLTR26 LTR ERVK 221 320 -322 5 1518 652 303 58 21 chr4 122378701 122378890 -33251230 - B3A SINE B2 -1 197 2 5 1518 289 232 241 0 chr4 122378948 122379060 -33251060 - B1_Mus2 SINE Alu 0 147 9 5 1518 198 191 0 0 chr4 122379130 122379172 -33250948 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5 1518 353 356 43 63 chr4 122379179 122379386 -33250734 - B4A SINE B4 -78 214 12 5 1518 317 333 14 85 chr4 122379700 122379841 -33250279 - B3 SINE B2 -84 132 2 5 1518 292 272 9 104 chr4 122379904 122380019 -33250101 - PB1D7 SINE Alu 0 120 17 5 1518 926 113 7 0 chr4 122380265 122380416 -33249704 + (GA)n Simple_repeat Simple_repeat 1 152 0 5 1518 530 316 32 0 chr4 122380417 122380572 -33249548 - B3A SINE B2 -36 162 3 5 1518 396 0 0 0 chr4 122380572 122380616 -33249504 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1518 180 77 0 0 chr4 122380619 122380645 -33249475 + (TAGG)n Simple_repeat Simple_repeat 1 26 0 6 1518 288 330 214 4 chr4 122380773 122381044 -33249076 - L2 LINE L2 -606 2813 2486 6 1518 372 333 55 28 chr4 122381346 122381491 -33248629 + RSINE1 SINE B4 8 156 -9 6 1518 266 397 25 0 chr4 122381599 122381720 -33248400 + ID_B1 SINE B4 78 201 -23 6 1518 183 162 0 0 chr4 122381738 122381775 -33248345 + A-rich Low_complexity Low_complexity 3 39 0 6 1518 367 352 14 35 chr4 122381848 122381992 -33248128 + B1_Mur2 SINE Alu 5 145 -4 6 1518 391 252 3 3 chr4 122382730 122382820 -33247300 - B1_Mus1 SINE Alu -55 94 6 6 1518 260 322 0 112 chr4 122382741 122382839 -33247281 - MT2B LTR ERVL -361 240 154 6 1518 248 243 131 37 chr4 122383330 122383437 -33246683 + B1F1 SINE Alu 3 119 -30 6 1518 510 17 0 0 chr4 122383437 122383496 -33246624 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1518 531 299 27 0 chr4 122383514 122383661 -33246459 - B3A SINE B2 -46 152 2 6 1518 359 70 0 50 chr4 122383670 122383730 -33246390 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1518 36299 30 1 1 chr4 122383756 122391030 -33239090 - L1Md_T LINE L1 0 6585 1 6 1518 408 333 37 19 chr4 122391075 122391237 -33238883 - RSINE1 SINE B4 0 165 1 6 1518 432 305 135 70 chr4 122391275 122391691 -33238429 - L2 LINE L2 -654 2765 2323 6 1518 439 320 34 13 chr4 122391810 122391959 -33238161 + RSINE1 SINE B4 8 159 -6 6 1518 421 322 0 8 chr4 122392066 122392188 -33237932 + ID_B1 SINE B4 81 201 -23 6 1518 530 278 31 23 chr4 122392310 122392439 -33237681 + B1_Mus2 SINE Alu 1 130 -17 6 1518 335 139 12 60 chr4 122393685 122393769 -33236351 + L1_Mus3 LINE L1 6559 6638 0 6 1518 1555 209 73 63 chr4 122393777 122394190 -33235930 + L1VL4 LINE L1 208 624 -5678 6 1518 3901 102 5 42 chr4 122394190 122394744 -33235376 + L1_Mus2 LINE L1 6032 6565 -1 6 1518 283 311 148 45 chr4 122395124 122395414 -33234706 - L2 LINE L2 -624 2795 2476 6 1518 477 62 0 0 chr4 122395429 122395494 -33234626 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1518 354 74 0 0 chr4 122395496 122395550 -33234570 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1518 221 321 93 9 chr4 122395580 122395687 -33234433 + PB1D10 SINE Alu 1 116 -1 6 1518 441 0 0 0 chr4 122395774 122395823 -33234297 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1518 419 298 8 16 chr4 122395824 122395947 -33234173 - RSINE1 SINE B4 -32 133 12 6 1518 619 223 232 11 chr4 122396010 122396187 -33233933 - B3 SINE B2 0 216 1 6 1518 225 311 115 10 chr4 122396188 122396292 -33233828 - ID_B1 SINE B4 -40 184 70 6 1518 513 277 36 14 chr4 122396915 122397054 -33233066 - B1F SINE Alu -2 147 6 6 1518 242 300 55 11 chr4 122397167 122397258 -33232862 - PB1D10 SINE Alu -7 110 16 6 1518 223 307 112 11 chr4 122397179 122397268 -33232852 - B4A SINE B4 -104 188 91 6 1518 340 257 40 46 chr4 122397425 122397576 -33232544 - L2 LINE L2 -1183 2236 2087 6 1518 298 326 52 44 chr4 122397576 122397711 -33232409 + B1F SINE Alu 6 141 -8 6 1518 210 389 0 0 chr4 122398428 122398500 -33231620 - B4A SINE B4 -138 154 83 6 1518 269 208 0 0 chr4 122398526 122398574 -33231546 - ID_B1 SINE B4 -56 168 121 6 1518 916 262 107 3 chr4 122398582 122398927 -33231193 + RCHARR1 DNA MER1_type 114 494 -480 6 1518 621 301 87 0 chr4 122398932 122399115 -33231005 + B3 SINE B2 3 201 -15 6 1518 1825 190 167 102 chr4 122399119 122399458 -33230662 + RMER4B LTR ERVK 17 351 -234 6 1518 2451 104 21 12 chr4 122399458 122399797 -33230323 - Lx2 LINE L1 -10 6987 6646 6 1518 1825 190 167 102 chr4 122399797 122399989 -33230131 + RMER4B LTR ERVK 352 583 -2 6 1518 3874 110 3 17 chr4 122400759 122401341 -33228779 - MusHAL1 LINE L1 -57 2655 2082 6 1518 391 288 45 145 chr4 122401661 122401840 -33228280 + B4 SINE B4 63 223 -69 6 1518 782 182 14 7 chr4 122401704 122401842 -33228278 + B1_Mus1 SINE Alu 10 148 0 6 1518 1110 273 99 22 chr4 122402252 122402664 -33227456 + RLTR20A2 LTR ERVK 2 445 -133 6 1518 405 0 0 0 chr4 122402692 122402737 -33227383 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1518 357 379 48 8 chr4 122404103 122404228 -33225892 - B1_Mus2 SINE Alu -17 130 1 6 1518 460 333 8 0 chr4 122404312 122404444 -33225676 - ID_B1 SINE B4 -8 216 84 6 1518 801 79 2 4 chr4 122404424 122404545 -33225575 + B1_Mus1 SINE Alu 19 137 -12 6 1518 192 40 0 0 chr4 122404545 122404570 -33225550 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1518 411 319 36 14 chr4 122404586 122404726 -33225394 - RSINE1 SINE B4 -17 148 6 6 1518 414 253 221 9 chr4 122404965 122405196 -33224924 + L2 LINE L2 2485 2764 -655 6 1518 355 389 13 7 chr4 122405249 122405399 -33224721 + RSINE1 SINE B4 11 161 -4 6 1518 221 298 35 0 chr4 122405434 122405491 -33224629 + B2_Mm2 SINE B2 3 61 -134 6 1518 390 298 9 9 chr4 122405800 122405905 -33224215 + PB1D10 SINE Alu 2 106 -11 6 1518 365 336 7 78 chr4 122405981 122406123 -33223997 + B3 SINE B2 1 132 -84 6 1518 459 0 0 0 chr4 122406420 122406471 -33223649 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 6 1518 240 291 86 190 chr4 122406482 122406703 -33223417 + B4A SINE B4 9 206 -86 6 1518 346 271 229 0 chr4 122406787 122406905 -33223215 + B1_Mur3 SINE Alu 5 149 0 6 1518 180 152 0 0 chr4 122406932 122406965 -33223155 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 6 1518 633 337 5 5 chr4 122406974 122407162 -33222958 + B3A SINE B2 1 188 -10 6 1518 21 57 0 0 chr4 122407166 122407201 -33222919 + AT_rich Low_complexity Low_complexity 1 35 0 6 1518 1087 277 99 6 chr4 122407704 122408038 -33222082 + ORR1D2 LTR MaLR 6 370 0 6 1518 1638 212 192 16 chr4 122408445 122408929 -33221191 - RMER4B LTR ERVK 0 585 17 6 1518 241 200 0 0 chr4 122408937 122408982 -33221138 - B3 SINE B2 -19 197 153 6 1518 1223 68 0 20 chr4 122408999 122409149 -33220971 + B1_Mm SINE Alu 1 147 0 6 1518 277 264 0 52 chr4 122409277 122409373 -33220747 - RCHARR1 DNA MER1_type -469 505 415 6 1518 291 325 0 0 chr4 122409375 122409452 -33220668 + ID_B1 SINE B4 124 200 -24 6 1518 354 357 0 0 chr4 122409493 122409605 -33220515 + RSINE1 SINE B4 23 134 -31 6 1518 212 100 25 0 chr4 122409611 122409651 -33220469 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1518 340 275 46 0 chr4 122409745 122409854 -33220266 - PB1D10 SINE Alu -1 116 3 6 1518 223 254 0 17 chr4 122409873 122409933 -33220187 + CT-rich Low_complexity Low_complexity 3 61 0 6 1518 221 308 137 17 chr4 122409960 122410135 -33219985 + L2a LINE L2 2473 2668 -751 6 1518 22 56 0 0 chr4 122410879 122410915 -33219205 + AT_rich Low_complexity Low_complexity 1 36 0 6 1518 467 299 0 18 chr4 122410915 122411024 -33219096 - B1F2 SINE Alu -18 131 25 6 1518 181 348 117 15 chr4 122411345 122411482 -33218638 + L2a LINE L2 3200 3350 -76 6 1518 1518 261 39 4 chr4 122412188 122412693 -33217427 - Lx4B LINE L1 -15 6985 6438 6 1518 8664 105 81 12 chr4 122413014 122414486 -33215634 + MusHAL1 LINE L1 808 2380 -332 6 1518 3579 164 11 5 chr4 122414486 122415142 -33214978 + MurERV4_19-int LTR ERVK 3106 3765 -2015 6 1518 255 116 0 0 chr4 122415837 122415880 -33214240 + MurERV4_19-int LTR ERVK 3761 3803 -1977 6 1518 866 235 0 36 chr4 122416316 122416541 -33213579 + L1VL4 LINE L1 526 742 -5560 6 1518 687 202 139 16 chr4 122416542 122416785 -33213335 + Lx3B LINE L1 6693 7007 -2 6 1518 759 179 5 32 chr4 122416794 122416979 -33213141 + L1_Mur1 LINE L1 1106 1285 -5697 6 1518 547 68 0 0 chr4 122416975 122417048 -33213072 + L1_Mus3 LINE L1 5725 5797 -841 6 1518 14847 102 14 2 chr4 122417049 122419890 -33210230 + L1Md_A LINE L1 422 3256 -2627 6 189 26792 78 75 5 chr4 122419877 122423754 -33206366 - L1Md_F LINE L1 -603 5280 1162 6 1519 3369 132 0 19 chr4 122423747 122424278 -33205842 - L1Md_F LINE L1 -5998 618 98 6 1519 1108 220 13 24 chr4 122424266 122424564 -33205556 - L1VL1 LINE L1 -6127 295 1 6 1519 6156 96 10 23 chr4 122424566 122426223 -33203897 - L1VL1 LINE L1 -3792 2091 462 6 1519 386 83 0 32 chr4 122426225 122426287 -33203833 + MTB_Mm LTR MaLR 348 407 0 6 1519 1102 128 0 7 chr4 122426301 122426450 -33203670 - B1_Mus1 SINE Alu 0 148 1 6 1519 1227 96 11 5 chr4 122426454 122426643 -33203477 - MusHAL1 LINE L1 -439 2273 2084 6 1519 714 259 0 0 chr4 122426993 122427140 -33202980 + B1_Mus2 SINE Alu 1 147 0 6 1519 1306 268 57 37 chr4 122427571 122428035 -33202085 + RLTR20A2 LTR ERVK 1 460 -108 6 1519 942 112 0 0 chr4 122428035 122428213 -33201907 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1519 905 286 84 68 chr4 122428213 122428247 -33201873 + RLTR20A2 LTR ERVK 461 506 -62 6 1519 15754 98 52 1 chr4 122429620 122432931 -33197189 - L1Md_F2 LINE L1 -1 6581 2981 6 1519 4133 53 22 0 chr4 122432932 122433421 -33196699 + L1Md_F2 LINE L1 6081 6580 -2 6 1519 1652 139 24 34 chr4 122433438 122433729 -33196391 + RMER12 LTR ERVK 422 709 -613 6 1519 25467 84 5 6 chr4 122433753 122438174 -33191946 - L1Md_F LINE L1 -1440 4443 99 6 1519 1151 130 105 0 chr4 122438169 122438369 -33191751 - L1_Mur1 LINE L1 -2168 3709 3489 6 1519 33372 75 2 3 chr4 122438361 122443660 -33186460 + L1Md_F2 LINE L1 199 5589 -297 6 1519 8345 59 2 1 chr4 122443660 122444655 -33185465 + L1Md_F2 LINE L1 5590 6585 0 6 1519 14711 114 10 14 chr4 122444655 122446686 -33183434 - L1_Mur1 LINE L1 -2362 3524 1503 6 1519 387 0 0 0 chr4 122446686 122446729 -33183391 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1519 14711 128 8 9 chr4 122446729 122447471 -33182649 - L1_Mur1 LINE L1 -4384 1502 760 6 1519 413 194 92 0 chr4 122447589 122447687 -33182433 - L1_Mur1 LINE L1 -6136 848 742 6 1519 384 247 58 16 chr4 122447689 122447830 -33182290 - RLTR11A2 LTR ERVK -318 135 1 6 1519 311 297 22 11 chr4 122448312 122448404 -33181716 + GA-rich Low_complexity Low_complexity 1 93 0 6 1519 298 161 18 18 chr4 122449009 122449066 -33181054 - B3A SINE B2 -140 58 2 6 1519 559 297 0 0 chr4 122449119 122449247 -33180873 - B1_Mus2 SINE Alu -17 130 3 7 1519 438 293 30 8 chr4 122449341 122449367 -33180753 - B1_Mur4 SINE Alu 0 150 14 7 1519 472 221 9 37 chr4 122449367 122449475 -33180645 - ID_B1 SINE B4 -26 198 94 7 1519 438 291 92 7 chr4 122449584 122449726 -33180394 - RSINE1 SINE B4 -6 159 6 7 1519 192 200 0 0 chr4 122449840 122449880 -33180240 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 7 1519 289 294 55 8 chr4 122450053 122450180 -33179940 + L2 LINE L2 2485 2617 -802 7 1519 404 168 52 17 chr4 122450265 122450380 -33179740 + Lx3_Mus LINE L1 6016 6134 -875 7 1519 5966 93 1 0 chr4 122450380 122451164 -33178956 + Lx3_Mus LINE L1 6225 7009 0 7 1519 18506 25 1 1 chr4 122451350 122453487 -33176633 + L1Md_A LINE L1 3448 5586 -297 7 1519 8564 36 0 0 chr4 122453487 122454483 -33175637 + L1Md_A LINE L1 5587 6582 0 7 1519 527 269 57 23 chr4 122454584 122454759 -33175361 + B3A SINE B2 1 181 -17 7 1519 338 288 44 88 chr4 122455186 122455323 -33174797 + B3 SINE B2 2 132 -84 7 1519 691 274 14 60 chr4 122455645 122455862 -33174258 + B4A SINE B4 1 207 -85 7 1519 750 256 14 28 chr4 122455939 122456156 -33173964 + B3A SINE B2 3 216 0 7 1519 335 83 17 0 chr4 122456238 122456298 -33173822 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1519 2172 67 0 0 chr4 122456381 122456650 -33173470 - L1_Mus1 LINE L1 0 6567 6299 7 1519 1199 215 126 12 chr4 122456972 122457297 -33172823 + ORR1D2 LTR MaLR 3 364 -6 7 1519 222 152 0 0 chr4 122457321 122457354 -33172766 + B1F SINE Alu 18 50 -99 7 1519 712 246 73 34 chr4 122457634 122457840 -33172280 - B3 SINE B2 0 216 3 7 1519 1391 265 80 5 chr4 122457845 122458293 -33171827 - RCHARR1 DNA MER1_type -479 495 14 7 1519 241 255 104 43 chr4 122458322 122458437 -33171683 + L1M3 LINE L1 5197 5318 -822 7 1519 408 71 0 0 chr4 122458455 122458511 -33171609 + (TAGG)n Simple_repeat Simple_repeat 3 58 0 7 1519 425 316 51 11 chr4 122458513 122458689 -33171431 + B3A SINE B2 5 187 -11 7 1519 753 307 0 0 chr4 122458704 122458916 -33171204 - B3 SINE B2 0 216 5 7 1519 25 0 0 0 chr4 122458922 122458947 -33171173 + AT_rich Low_complexity Low_complexity 1 25 0 7 1519 282 278 14 0 chr4 122458955 122459027 -33171093 + PB1D9 SINE Alu 7 79 -41 7 1519 211 197 0 43 chr4 122459030 122459054 -33171066 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 1519 704 229 137 0 chr4 122459054 122459237 -33170883 + B3 SINE B2 2 209 -7 7 1519 211 197 0 43 chr4 122459237 122459281 -33170839 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7 1519 1099 275 58 33 chr4 122459410 122459892 -33170228 + L1MB7 LINE L1 5504 5997 -187 7 1519 372 94 0 0 chr4 122459893 122459946 -33170174 + (T)n Simple_repeat Simple_repeat 1 53 0 7 1519 32541 75 1 38 chr4 122459946 122461173 -33168947 + L1Md_F2 LINE L1 200 1405 -4478 7 1519 797 53 26 0 chr4 122461173 122461286 -33168834 + BC1_Mm scRNA scRNA 1 116 -36 7 1519 32541 75 1 38 chr4 122461286 122465536 -33164584 + L1Md_F2 LINE L1 1406 5586 -297 7 1519 8405 39 1 0 chr4 122465537 122466525 -33163595 + L1Md_F2 LINE L1 5588 6576 -6 7 1519 229 298 29 9 chr4 122466580 122466685 -33163435 + L1MB7 LINE L1 6060 6166 -8 7 1519 423 329 106 0 chr4 122466733 122466894 -33163226 + ID_B1 SINE B4 1 178 -46 7 1519 229 264 38 0 chr4 122466909 122466962 -33163158 + B1F1 SINE Alu 4 58 -91 7 1519 301 261 156 19 chr4 122467498 122467658 -33162462 + L2 LINE L2 1883 2064 -1355 7 1519 412 18 35 0 chr4 122467709 122467766 -33162354 + (TTG)n Simple_repeat Simple_repeat 2 60 0 7 1519 245 297 152 38 chr4 122467915 122468125 -33161995 + L2 LINE L2 2083 2316 -1103 7 1519 563 179 76 17 chr4 122468451 122468570 -33161550 + B1F SINE Alu 22 147 -2 7 1519 232 242 97 0 chr4 122468603 122468665 -33161455 + ID_B1 SINE B4 151 218 -6 7 1519 231 234 21 0 chr4 122468672 122468719 -33161401 + B1_Mus1 SINE Alu 1 48 -100 7 1519 247 269 30 0 chr4 122468712 122468779 -33161341 + ID_B1 SINE B4 135 203 -21 7 1519 563 265 13 32 chr4 122468798 122468954 -33161166 + RSINE1 SINE B4 4 156 -9 7 1519 245 338 102 19 chr4 122468954 122469159 -33160961 + L2a LINE L2 2476 2697 -722 7 1519 1161 74 0 0 chr4 122469556 122469705 -33160415 + L1_Mus1 LINE L1 6416 6564 -3 7 1519 486 118 106 0 chr4 122469705 122469790 -33160330 - B2_Mm1t SINE B2 -6 187 94 7 1519 459 267 0 0 chr4 122469903 122470008 -33160112 - B1F2 SINE Alu -15 134 30 7 1519 314 312 231 13 chr4 122470172 122470484 -33159636 + L2a LINE L2 2952 3331 -95 7 1519 1846 127 44 52 chr4 122471455 122471820 -33158300 - RLTR25A LTR ERVK -725 378 17 7 1519 1913 199 29 62 chr4 122471803 122472048 -33158072 + RLTR25B LTR ERVK 562 807 -221 7 1519 186 43 0 0 chr4 122472048 122472071 -33158049 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1519 1913 199 29 62 chr4 122472071 122472308 -33157812 + RLTR25B LTR ERVK 808 1028 0 7 1519 231 269 0 19 chr4 122472406 122472459 -33157661 + C-rich Low_complexity Low_complexity 4 55 0 7 1519 383 231 131 28 chr4 122472459 122472566 -33157554 - B1_Mur1 SINE Alu -31 118 1 7 1519 402 320 23 23 chr4 122472782 122472913 -33157207 - RLTR19 LTR ERVK 0 499 369 7 1519 583 359 31 6 chr4 122473146 122473496 -33156624 - MuLV-int LTR ERV1 -93 7513 7155 7 1519 2346 11 86 0 chr4 122474603 122474872 -33155248 - RLTR10B LTR ERVK 0 292 1 7 1519 2016 119 18 59 chr4 122474922 122475261 -33154859 + ORR1A4 LTR MaLR 5 329 0 7 1519 741 295 0 0 chr4 122475577 122475750 -33154370 - RLTR19-int LTR ERVK -1575 4562 4390 7 1519 1281 350 76 38 chr4 122475660 122477667 -33152453 - MuLV-int LTR ERV1 -2307 5299 3167 7 1519 1049 330 58 52 chr4 122477738 122478654 -33151466 - MuLV-int LTR ERV1 -4516 3090 2170 7 1519 1147 130 49 0 chr4 122478637 122478822 -33151298 - RLTR19-int LTR ERVK -2070 4067 3874 7 1519 1203 55 0 0 chr4 122479035 122479181 -33150939 - B1_Mm SINE Alu 0 147 2 7 1519 614 79 11 0 chr4 122479259 122479348 -33150772 + (TC)n Simple_repeat Simple_repeat 2 91 0 7 1519 1140 62 0 0 chr4 122479889 122480051 -33150069 + (TC)n Simple_repeat Simple_repeat 1 162 0 7 1519 4198 176 13 30 chr4 122480081 122480901 -33149219 + Lx6 LINE L1 4577 5382 -498 7 1519 10603 74 11 28 chr4 122481070 122482185 -33147935 - Lx3_Mus LINE L1 0 7009 5915 7 1519 235 0 0 54 chr4 122482185 122482222 -33147898 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 7 1519 12265 72 5 2 chr4 122482222 122483850 -33146270 - Lx3_Mus LINE L1 -1095 5914 4288 7 1519 902 242 108 34 chr4 122483872 122484048 -33146072 - RLTR33 LTR ERVK -89 589 397 7 1519 1849 121 73 32 chr4 122484048 122484364 -33145756 + ORR1A4 LTR MaLR 1 329 0 7 1519 902 215 29 19 chr4 122484364 122484542 -33145578 - RLTR33 LTR ERVK -282 396 175 7 1519 2859 211 93 30 chr4 122484561 122486220 -33143900 + Lx6 LINE L1 5371 7366 -94 7 1519 722 157 8 23 chr4 122486278 122486408 -33143712 + B1_Mur3 SINE Alu 2 129 -20 7 1519 306 73 0 0 chr4 122486411 122486452 -33143668 + (TAA)n Simple_repeat Simple_repeat 2 42 0 7 1519 732 233 85 6 chr4 122486481 122486658 -33143462 - B3 SINE B2 -24 192 2 7 1519 279 346 36 36 chr4 122486704 122486815 -33143305 - B1F2 SINE Alu -37 112 2 7 1519 461 62 0 15 chr4 122486828 122486894 -33143226 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1519 839 199 24 68 chr4 122487140 122487345 -33142775 - B3A SINE B2 -1 197 2 7 1519 304 197 66 0 chr4 122487356 122487432 -33142688 - L1MB3 LINE L1 -95 6088 6008 7 1519 1758 158 121 0 chr4 122487436 122487784 -33142336 + MTC LTR MaLR 25 414 -7 7 1519 423 200 0 113 chr4 122487787 122487813 -33142307 - L1MB3 LINE L1 -160 6023 5998 7 1519 1369 198 68 121 chr4 122487813 122488108 -33142012 + MTEa LTR MaLR 1 306 -73 7 1519 623 197 98 0 chr4 122488108 122488230 -33141890 + B1_Mur2 SINE Alu 2 135 -14 7 1519 1369 198 68 121 chr4 122488230 122488330 -33141790 + MTEa LTR MaLR 307 375 -4 7 1519 423 200 0 113 chr4 122488330 122488427 -33141693 - L1MB3 LINE L1 -186 5997 5914 7 1519 513 270 47 94 chr4 122488442 122488551 -33141569 - L1MB3 LINE L1 -472 5711 5598 7 1519 951 248 5 40 chr4 122488551 122488774 -33141346 - B3 SINE B2 0 216 2 7 1519 513 270 47 94 chr4 122488774 122488890 -33141230 - L1MB3 LINE L1 -586 5597 5496 7 1519 558 0 0 0 chr4 122488890 122488952 -33141168 + (GTTTG)n Simple_repeat Simple_repeat 2 63 0 7 1519 721 262 0 56 chr4 122489383 122489502 -33140618 + B4 SINE B4 106 221 -71 7 1519 225 0 0 0 chr4 122489502 122489527 -33140593 + (TAA)n Simple_repeat Simple_repeat 3 27 0 7 1519 721 262 0 56 chr4 122489527 122489605 -33140515 + B4 SINE B4 222 291 -1 7 1519 412 127 0 0 chr4 122489812 122489875 -33140245 - B1_Mur3 SINE Alu -5 144 82 7 1519 317 206 29 0 chr4 122489972 122490040 -33140080 - RMER17C-int LTR ERVK -145 3093 3024 7 1519 2168 105 6 18 chr4 122490355 122490684 -33139436 - Lx2 LINE L1 -1 6996 6672 7 1519 1960 175 62 5 chr4 122490698 122491118 -33139002 - RLTR22_Mur LTR ERVK -297 1551 1108 7 1519 849 137 24 0 chr4 122491118 122491242 -33138878 - Lx2B LINE L1 -232 6768 6642 7 1519 375 145 0 13 chr4 122491242 122491319 -33138801 + Lx2B LINE L1 6851 6926 -74 7 1519 342 259 41 57 chr4 122491469 122491592 -33138528 - RSINE1 SINE B4 -27 138 18 7 1519 2935 113 77 49 chr4 122491886 122492396 -33137724 + RLTR28 LTR ERVL 1 524 0 7 1519 469 198 16 0 chr4 122492503 122492629 -33137491 + (TATATG)n Simple_repeat Simple_repeat 2 129 0 7 1519 737 196 15 0 chr4 122492629 122492762 -33137358 - B1_Mus2 SINE Alu -12 135 1 7 1519 313 303 0 105 chr4 122492800 122492832 -33137288 + ORR1D2 LTR MaLR 1 29 -345 7 1519 598 244 15 0 chr4 122492832 122492963 -33137157 + B1_Mur1 SINE Alu 2 134 -15 7 1519 405 0 0 0 chr4 122492965 122493010 -33137110 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 7 1519 437 247 0 0 chr4 122493010 122493107 -33137013 + ORR1D2 LTR MaLR 24 120 -250 7 1519 757 199 0 14 chr4 122493175 122493313 -33136807 + B1_Mur1 SINE Alu 13 148 -1 7 1519 510 177 188 13 chr4 122493327 122493476 -33136644 + ORR1D2 LTR MaLR 193 367 -3 7 1519 458 211 115 0 chr4 122493662 122493766 -33136354 - PB1D9 SINE Alu 0 120 5 7 1519 355 244 0 35 chr4 122493968 122493984 -33136136 - ID4 SINE ID 0 83 7 7 1519 361 203 0 0 chr4 122493984 122494048 -33136072 - tRNA-Ala-GCY_ tRNA tRNA -11 64 1 7 1519 474 264 94 65 chr4 122494815 122494953 -33135167 - RSINE1 SINE B4 -20 145 4 7 1519 229 250 139 0 chr4 122495008 122495080 -33135040 - PB1D10 SINE Alu -35 82 1 7 1519 305 212 15 0 chr4 122495080 122495145 -33134975 + MLT1L LTR MaLR 532 597 -13 7 1519 1133 170 0 29 chr4 122495265 122495471 -33134649 - URR1B DNA MER1_type 0 225 26 7 1519 1041 246 70 10 chr4 122495506 122495806 -33134314 - RMER20A LTR ERVK -37 479 162 7 1519 343 189 54 0 chr4 122495802 122495876 -33134244 + B1_Mur1 SINE Alu 65 142 -7 7 1519 234 91 0 0 chr4 122495878 122495911 -33134209 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 7 1519 306 281 0 37 chr4 122495983 122496090 -33134030 - SRV_MM-int LTR ERVK -3549 2932 2830 7 1519 510 343 56 63 chr4 122496298 122497166 -33132954 - SRV_MM-int LTR ERVK -4778 2803 1698 7 1519 342 67 0 0 chr4 122497416 122497461 -33132659 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1519 1119 87 0 0 chr4 122497461 122497610 -33132510 - B1_Mur3 SINE Alu 0 149 1 8 1519 298 312 0 0 chr4 122497623 122497719 -33132401 - SRV_MM-int LTR ERVK -6020 1660 1565 7 1519 2759 83 161 45 chr4 122498135 122498600 -33131520 + MURVY-LTR LTR ERV1 1 519 0 8 1519 1065 82 7 40 chr4 122499680 122499832 -33130288 + B1_Mus1 SINE Alu 2 148 0 8 1519 507 33 0 0 chr4 122499868 122499929 -33130191 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1519 328 351 77 18 chr4 122500006 122500174 -33129946 + LTR33B LTR ERVL 11 188 -315 1 1519 393 221 46 11 chr4 122500673 122500760 -33129360 + RMER20B LTR ERVK 1 90 -537 2 1519 2188 98 24 76 chr4 122500764 122501173 -33128947 - RLTR23 LTR ERV1 -1 429 42 3 1519 1561 177 6 81 chr4 122501323 122501414 -33128706 + RLTR14 LTR ERV1 1 86 -296 4 1519 3772 117 161 70 chr4 122501414 122502244 -33127876 - RMER17A2 LTR ERVK 0 906 1 5 1519 1561 177 6 81 chr4 122502244 122502509 -33127611 + RLTR14 LTR ERV1 87 330 -52 4 1519 7835 41 23 21 chr4 122502519 122502626 -33127494 - L1Md_F2 LINE L1 -13 6569 6459 6 1519 2267 129 55 59 chr4 122502626 122503103 -33127017 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1519 7835 41 23 21 chr4 122503103 122503976 -33126144 - L1Md_F2 LINE L1 -124 6458 5587 6 1519 659 191 16 82 chr4 122504009 122504298 -33125822 + RMER17C LTR ERVK 10 482 -327 8 1519 458 82 23 23 chr4 122504298 122504385 -33125735 + (TC)n Simple_repeat Simple_repeat 2 88 0 9 1519 321 283 11 11 chr4 122504513 122504606 -33125514 + RMER10B LTR ERVL 270 362 -36 1 1519 308 178 0 52 chr4 122505241 122505318 -33124802 + MYSERV-int LTR ERVK 2113 2185 -3952 1 1519 22 35 0 0 chr4 122505336 122505365 -33124755 + AT_rich Low_complexity Low_complexity 1 29 0 1 1519 602 216 59 11 chr4 122505405 122505603 -33124517 + MYSERV-int LTR ERVK 5623 5792 -758 1 1519 2111 102 128 19 chr4 122505975 122506343 -33123777 - RLTR28B LTR ERVL -73 408 1 1 1519 489 226 59 0 chr4 122506372 122506474 -33123646 + PB1D7 SINE Alu 5 112 -8 1 1519 3034 129 80 36 chr4 122507039 122507588 -33122532 + RMER15 LTR ERVL 1 573 -2 1 1519 672 179 102 22 chr4 122507625 122507762 -33122358 + B1_Mur4 SINE Alu 2 149 -1 1 1519 2181 179 40 9 chr4 122507793 122508221 -33121899 + RLTR31A_Mm LTR ERVK 1 441 -143 1 1519 579 242 158 0 chr4 122508394 122508559 -33121561 + B4 SINE B4 99 289 -3 1 1519 408 71 0 0 chr4 122508756 122508812 -33121308 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1519 512 217 33 8 chr4 122508812 122508933 -33121187 - ID_B1 SINE B4 -20 204 81 2 1519 234 150 0 0 chr4 122509097 122509137 -33120983 + (TCC)n Simple_repeat Simple_repeat 2 41 0 2 1519 1070 256 236 12 chr4 122509278 122509833 -33120287 - Lx8 LINE L1 -74 7399 6720 2 1519 1083 125 128 15 chr4 122509846 122510049 -33120071 - URR1A DNA MER1_type 0 226 1 2 1519 409 238 72 58 chr4 122510071 122510209 -33119911 - MER31B LTR ERV1 -229 237 98 2 1519 285 269 0 0 chr4 122510306 122510374 -33119746 + ID SINE ID 2 69 -223 2 1519 252 0 0 0 chr4 122510904 122510932 -33119188 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1519 542 245 63 50 chr4 122511056 122511215 -33118905 + RSINE1 SINE B4 3 163 -2 2 1519 369 0 0 0 chr4 122511218 122511259 -33118861 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1519 23 0 0 0 chr4 122511267 122511290 -33118830 + AT_rich Low_complexity Low_complexity 1 23 0 2 1519 450 75 0 0 chr4 122511581 122511648 -33118472 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1519 512 254 32 0 chr4 122511730 122511856 -33118264 + ID_B1 SINE B4 82 211 -13 2 1519 690 259 88 25 chr4 122511853 122512091 -33118029 - B4A SINE B4 -39 253 1 3 1519 225 352 31 43 chr4 122512149 122512312 -33117808 - RSINE1 SINE B4 -2 163 3 3 1519 1952 108 29 3 chr4 122514234 122514541 -33115579 + Lx LINE L1 6340 6654 0 3 1519 213 216 270 16 chr4 122514605 122514762 -33115358 - L2b LINE L2 -361 3058 2860 3 1519 526 185 0 18 chr4 122514836 122514946 -33115174 + B1F2 SINE Alu 24 131 -18 3 1519 479 152 22 0 chr4 122515171 122515263 -33114857 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 3 1519 904 145 76 11 chr4 122515278 122515465 -33114655 - B2_Mm2 SINE B2 -15 201 1 3 1519 275 333 143 25 chr4 122515755 122516041 -33114079 - L2b LINE L2 -626 2793 2474 3 1519 280 301 29 0 chr4 122516071 122516174 -33113946 + PB1D10 SINE Alu 12 117 0 3 1519 213 214 37 46 chr4 122516214 122516322 -33113798 + T-rich Low_complexity Low_complexity 5 111 0 3 1519 1176 74 0 0 chr4 122516322 122516470 -33113650 - B1_Mus1 SINE Alu 0 148 1 4 1519 288 0 0 0 chr4 122516487 122516519 -33113601 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1519 340 282 7 88 chr4 122516547 122516683 -33113437 - ID_B1 SINE B4 -3 221 97 4 1519 740 262 43 5 chr4 122517232 122517439 -33112681 - ID_B1 SINE B4 -9 215 1 4 1519 1507 294 68 52 chr4 122517508 122518035 -33112085 - L1MB5 LINE L1 -8 6166 5599 4 1519 273 29 0 0 chr4 122518035 122518069 -33112051 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1519 818 173 0 43 chr4 122518070 122518209 -33111911 - B1_Mur4 SINE Alu -13 137 5 4 1519 1507 294 68 52 chr4 122518209 122518351 -33111769 - L1MB5 LINE L1 -576 5598 5476 4 1519 645 266 14 7 chr4 122518351 122518495 -33111625 + B1_Mur1 SINE Alu 3 147 -2 4 1519 1507 294 68 52 chr4 122518495 122518591 -33111529 - L1MB5 LINE L1 -699 5475 5386 4 1519 225 0 0 0 chr4 122518655 122518680 -33111440 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1519 357 24 0 0 chr4 122518680 122518721 -33111399 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1519 441 242 92 23 chr4 122518723 122518854 -33111266 - B3A SINE B2 -58 140 1 5 1519 22 0 0 0 chr4 122518862 122518884 -33111236 + AT_rich Low_complexity Low_complexity 1 22 0 5 1519 532 247 12 81 chr4 122518884 122519056 -33111064 - B3A SINE B2 0 198 39 5 1519 1847 142 148 0 chr4 122519059 122519226 -33110894 - ORR1C2 LTR MaLR -2 382 193 5 1519 192 77 0 0 chr4 122519226 122519252 -33110868 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 5 1519 1847 142 148 0 chr4 122519252 122519416 -33110704 - ORR1C2 LTR MaLR -192 192 3 5 1519 265 247 121 19 chr4 122519441 122519560 -33110560 - L1MB5 LINE L1 -821 5325 5197 4 1519 1846 240 114 50 chr4 122519566 122520000 -33110120 + RCHARR1 DNA MER1_type 3 498 -476 5 1519 795 259 24 10 chr4 122520000 122520207 -33109913 + B3 SINE B2 2 211 -5 5 1519 1846 240 114 50 chr4 122520207 122520457 -33109663 + RCHARR1 DNA MER1_type 499 731 -243 5 1519 306 0 0 0 chr4 122520491 122520525 -33109595 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 5 1519 240 86 0 0 chr4 122520528 122520563 -33109557 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1519 752 127 8 0 chr4 122520573 122520691 -33109429 - B1_Mus1 SINE Alu -25 123 5 5 1519 548 203 2 25 chr4 122520714 122520850 -33109270 - B1_Mur1 SINE Alu -9 140 7 6 1519 695 242 82 17 chr4 122520857 122521088 -33109032 + RCHARR1 DNA MER1_type 727 972 -2 5 1519 381 252 17 34 chr4 122521428 122521547 -33108573 - PB1D10 SINE Alu 0 117 1 6 1519 305 256 36 12 chr4 122521966 122522049 -33108071 - B4A SINE B4 -4 288 204 6 1519 604 241 78 47 chr4 122522060 122522252 -33107868 - B3A SINE B2 0 198 1 6 1519 752 122 8 0 chr4 122522255 122522378 -33107742 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 6 1519 1029 113 0 0 chr4 122522384 122522526 -33107594 - B1_Mus1 SINE Alu -6 142 1 6 1519 495 0 0 0 chr4 122522573 122522628 -33107492 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1519 241 311 111 56 chr4 122522629 122522755 -33107365 - RSINE1 SINE B4 -16 149 17 6 1519 183 80 0 0 chr4 122522774 122522799 -33107321 + (CAT)n Simple_repeat Simple_repeat 1 25 0 6 1519 492 297 17 106 chr4 122522807 122523044 -33107076 - B4A SINE B4 -76 216 1 6 1519 202 155 17 33 chr4 122523360 122523420 -33106700 + CT-rich Low_complexity Low_complexity 2 60 0 6 1519 303 314 0 0 chr4 122523434 122523529 -33106591 - B1F SINE Alu -8 112 18 7 1519 482 331 22 28 chr4 122523524 122523539 -33106581 - B3 SINE B2 -35 181 167 7 1519 297 0 0 0 chr4 122523539 122523572 -33106548 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1519 511 325 31 7 chr4 122523572 122523736 -33106384 - B3A SINE B2 -31 167 3 7 1519 1059 128 0 0 chr4 122523763 122523912 -33106208 + B1_Mur4 SINE Alu 2 150 0 7 1519 1336 96 32 0 chr4 122524121 122524308 -33105812 + B2_Mm1a SINE B2 1 193 0 7 1519 936 124 20 27 chr4 122524676 122524825 -33105295 - B1_Mur4 SINE Alu -1 149 2 7 1519 271 246 29 0 chr4 122524975 122525044 -33105076 - ID4_ SINE ID -11 72 2 7 1519 279 260 29 39 chr4 122525127 122525231 -33104889 + PB1D10 SINE Alu 15 117 0 7 1519 302 295 67 0 chr4 122525278 122525383 -33104737 + MER2 DNA MER2_type 86 197 -148 7 1519 475 198 120 8 chr4 122525866 122525983 -33104137 + B3 SINE B2 87 216 0 7 1519 724 167 189 53 chr4 122525990 122526180 -33103940 + B3 SINE B2 1 216 0 8 1519 716 56 9 45 chr4 122526243 122526355 -33103765 + B1_Mur4 SINE Alu 43 150 0 8 1519 31 26 0 0 chr4 122526355 122526393 -33103727 + AT_rich Low_complexity Low_complexity 1 38 0 8 1519 672 158 49 6 chr4 122526816 122526958 -33103162 + B1_Mur2 SINE Alu 7 149 0 8 1519 1263 7 7 0 chr4 122527531 122527676 -33102444 - B1_Mus2 SINE Alu -1 146 1 8 1519 207 375 52 7 chr4 122528134 122528287 -33101833 - L2 LINE L2 -571 2848 2689 8 1519 415 319 61 0 chr4 122528595 122528758 -33101362 + B4A SINE B4 1 173 -119 8 1519 365 246 105 23 chr4 122528935 122529068 -33101052 + B1F1 SINE Alu 5 148 -1 8 1519 414 221 49 74 chr4 122529075 122529197 -33100923 + PB1D9 SINE Alu 1 119 -1 8 1519 267 152 0 0 chr4 122529296 122529342 -33100778 + C-rich Low_complexity Low_complexity 4 49 0 8 1519 262 333 0 13 chr4 122529849 122529928 -33100192 - BC1_Mm scRNA scRNA -73 79 2 9 1519 1150 199 14 5 chr4 122529954 122530166 -33099954 - B3 SINE B2 -2 214 1 9 1519 708 217 0 7 chr4 122530221 122530365 -33099755 - ID_B1 SINE B4 0 224 82 9 1519 325 204 104 31 chr4 122532137 122532233 -33097887 - PB1D7 SINE Alu -8 112 10 9 1519 334 307 167 0 chr4 122532305 122532520 -33097600 + MER58B DNA MER1_type 18 268 -73 9 1519 422 255 39 19 chr4 122532786 122532890 -33097230 + B1F1 SINE Alu 7 112 -37 9 1519 276 365 35 9 chr4 122532890 122532902 -33097218 + ID_B1 SINE B4 88 206 -18 9 1519 235 261 15 0 chr4 122533517 122533582 -33096538 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 9 1519 424 195 56 84 chr4 122534316 122534435 -33095685 - PB1D9 SINE Alu 0 149 8 9 1519 457 204 50 20 chr4 122534493 122534593 -33095527 + PB1D7 SINE Alu 18 120 0 9 1519 180 0 0 0 chr4 122535499 122535519 -33094601 + (TTCTC)n Simple_repeat Simple_repeat 2 21 0 1 1519 720 149 7 88 chr4 122535519 122535666 -33094454 - B1_Mur1 SINE Alu -10 139 5 1 1519 243 0 0 0 chr4 122536418 122536445 -33093675 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1519 1098 75 46 46 chr4 122537486 122537634 -33092486 + B2_Mm2 SINE B2 1 156 -39 1 1519 6532 43 1 1 chr4 122537634 122538417 -33091703 + L1Md_F2 LINE L1 5797 6579 -3 1 1519 1098 75 46 46 chr4 122538417 122538463 -33091657 + B2_Mm2 SINE B2 157 195 0 1 1519 225 0 0 0 chr4 122538702 122538727 -33091393 + (TCCC)n Simple_repeat Simple_repeat 3 27 0 1 1519 250 246 49 0 chr4 122538850 122538911 -33091209 + PB1D9 SINE Alu 42 105 -15 1 1519 619 215 174 0 chr4 122538972 122539144 -33090976 + ID_B1 SINE B4 8 209 -15 1 1519 213 65 0 0 chr4 122539326 122539357 -33090763 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1519 22 35 0 0 chr4 122540512 122540541 -33089579 + AT_rich Low_complexity Low_complexity 1 29 0 1 1519 225 242 0 46 chr4 122540876 122540941 -33089179 - RMER15 LTR ERVL -108 467 406 1 1519 582 189 0 35 chr4 122541365 122541480 -33088640 - RSINE1 SINE B4 -43 122 12 1 1519 308 292 83 49 chr4 122541526 122541670 -33088450 - RSINE1 SINE B4 -13 152 4 1 1519 685 226 158 16 chr4 122542148 122542332 -33087788 - B3 SINE B2 -1 215 6 1 1519 855 212 78 0 chr4 122542652 122542845 -33087275 - B3 SINE B2 -7 209 2 1 1519 665 174 22 36 chr4 122542875 122543012 -33087108 + B1_Mus2 SINE Alu 1 135 -12 1 1519 255 61 0 0 chr4 122543013 122543046 -33087074 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1519 778 118 80 14 chr4 122543340 122543478 -33086642 + B1_Mus1 SINE Alu 1 147 -1 1 1519 579 186 9 9 chr4 122544056 122544170 -33085950 + B3 SINE B2 5 118 -98 1 1519 270 0 0 0 chr4 122544222 122544252 -33085868 + (TAA)n Simple_repeat Simple_repeat 3 32 0 1 1519 1709 16 0 15 chr4 122544365 122544561 -33085559 + B2_Mm1t SINE B2 1 193 0 1 1519 1254 7 0 0 chr4 122545091 122545237 -33084883 - L1Md_A LINE L1 0 6582 6437 1 1519 241 306 16 0 chr4 122545321 122545383 -33084737 - PB1D10 SINE Alu -41 76 14 1 1519 466 231 88 44 chr4 122545820 122545956 -33084164 - ID_B1 SINE B4 0 224 83 1 1519 217 294 14 14 chr4 122547296 122547365 -33082755 - ID4 SINE ID -1 82 14 1 1519 402 227 99 5 chr4 122547408 122547539 -33082581 - B3A SINE B2 -19 176 39 1 1519 1049 194 30 5 chr4 122547710 122547912 -33082208 + B3 SINE B2 1 207 -9 1 1519 451 327 69 38 chr4 122548807 122549068 -33081052 - B4 SINE B4 -19 273 5 1 1519 293 286 115 15 chr4 122549074 122549259 -33080861 + MIR3 SINE MIR 2 199 -9 1 1519 194 332 70 78 chr4 122549926 122550033 -33080087 - MIRc SINE MIR -17 251 159 1 1519 283 303 0 0 chr4 122550033 122550099 -33080021 - ID4_ SINE ID -15 68 3 1 1519 194 332 70 78 chr4 122550099 122550233 -33079887 - MIRc SINE MIR -110 158 12 1 1519 342 0 0 0 chr4 122551106 122551144 -33078976 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1519 517 240 149 17 chr4 122551512 122551686 -33078434 - B3 SINE B2 -1 215 19 1 1519 24 0 0 0 chr4 122551901 122551925 -33078195 + AT_rich Low_complexity Low_complexity 1 24 0 1 1519 552 246 26 72 chr4 122551933 122552086 -33078034 + B3A SINE B2 47 192 -6 1 1519 304 312 21 0 chr4 122552092 122552185 -33077935 - ID_B1 SINE B4 -46 178 84 1 1520 220 189 57 0 chr4 122552349 122552402 -33077718 - B4 SINE B4 -150 142 87 1 1520 201 351 0 0 chr4 122552535 122552629 -33077491 + L2 LINE L2 2349 2442 -977 1 1520 224 265 71 12 chr4 122552747 122552831 -33077289 - PB1D7 SINE Alu 0 120 32 1 1520 286 267 97 122 chr4 122553055 122553302 -33076818 - B4 SINE B4 0 292 52 1 1520 611 94 10 0 chr4 122553906 122554002 -33076118 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 1 1520 431 266 26 0 chr4 122554389 122554502 -33075618 + RSINE1 SINE B4 3 118 -47 1 1520 23 0 0 0 chr4 122554505 122554528 -33075592 + AT_rich Low_complexity Low_complexity 1 23 0 1 1520 848 143 30 0 chr4 122554528 122554661 -33075459 + B1_Mus1 SINE Alu 12 148 0 1 1520 432 211 9 52 chr4 122554773 122554888 -33075232 + B1_Mur1 SINE Alu 40 149 0 1 1520 587 197 38 38 chr4 122555203 122555335 -33074785 - B1_Mur1 SINE Alu -13 136 5 1 1520 636 275 76 23 chr4 122555529 122555793 -33074327 - L3 LINE CR1 -1 4488 4211 1 1520 307 254 0 66 chr4 122556226 122556302 -33073818 - ID4_ SINE ID -3 80 10 1 1520 1472 53 5 16 chr4 122556557 122556747 -33073373 + B2_Mm1a SINE B2 1 188 -5 1 1520 975 130 0 40 chr4 122556759 122556911 -33073209 + B1_Mus1 SINE Alu 3 148 0 1 1520 555 96 0 0 chr4 122556919 122557002 -33073118 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 1520 1746 10 0 0 chr4 122557311 122557503 -33072617 + B2_Mm1a SINE B2 2 193 0 1 1520 1605 185 106 13 chr4 122557723 122558101 -33072019 + MTC LTR MaLR 1 413 -8 1 1520 582 212 147 37 chr4 122559219 122559410 -33070710 + B3 SINE B2 5 216 0 1 1520 327 206 0 0 chr4 122559643 122559706 -33070414 - RSINE1 SINE B4 -6 159 97 1 1520 658 186 23 15 chr4 122559706 122559837 -33070283 - RSINE1 SINE B4 -31 134 3 1 1520 724 211 82 0 chr4 122559855 122560002 -33070118 + MER20 DNA MER1_type 2 160 -59 1 1520 192 77 0 0 chr4 122560220 122560246 -33069874 + (CACAA)n Simple_repeat Simple_repeat 2 27 0 1 1520 247 322 67 0 chr4 122561313 122561403 -33068717 - PB1D10 SINE Alu -20 97 2 1 1520 342 0 0 0 chr4 122562104 122562142 -33067978 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1520 297 0 0 0 chr4 122562142 122562174 -33067946 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1520 511 186 162 25 chr4 122564245 122564405 -33065715 - MIR SINE MIR 0 262 81 1 1520 780 153 107 0 chr4 122564705 122564836 -33065284 + B1_Mur2 SINE Alu 4 148 -1 1 1520 322 295 84 19 chr4 122564843 122564950 -33065170 + RSINE1 SINE B4 3 116 -49 1 1520 472 267 73 15 chr4 122564996 122565133 -33064987 - B1_Mm SINE Alu 0 147 3 1 1520 369 298 0 0 chr4 122565194 122565288 -33064832 + PB1D10 SINE Alu 1 94 -23 1 1520 185 0 0 39 chr4 122565296 122565322 -33064798 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1520 213 167 24 0 chr4 122565577 122565619 -33064501 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1520 197 200 182 0 chr4 122565628 122565683 -33064437 + MIR SINE MIR 124 188 -74 1 1520 209 208 0 0 chr4 122565933 122565981 -33064139 + T-rich Low_complexity Low_complexity 1 48 0 1 1520 782 213 6 31 chr4 122566349 122566492 -33063628 + RSINE1 SINE B4 3 142 -23 1 1520 489 34 0 0 chr4 122566492 122566551 -33063569 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1520 782 213 6 31 chr4 122566551 122566567 -33063553 + RSINE1 SINE B4 143 158 -7 1 1520 800 264 23 6 chr4 122566617 122566792 -33063328 + B3A SINE B2 1 178 -20 1 1520 1166 44 194 0 chr4 122566890 122567050 -33063070 + B2_Mm2 SINE B2 3 193 -2 1 1520 1325 106 0 5 chr4 122567242 122567432 -33062688 + B2_Mm2 SINE B2 1 189 -6 1 1520 527 153 0 10 chr4 122567432 122567531 -33062589 + GA-rich Low_complexity Low_complexity 1 98 0 1 1520 529 292 123 69 chr4 122567534 122567795 -33062325 + MLT1A0 LTR MaLR 72 346 -19 1 1520 686 169 0 8 chr4 122567895 122568014 -33062106 - B1_Mur1 SINE Alu -2 147 30 1 1520 226 237 74 62 chr4 122568756 122568837 -33061283 + MIRb SINE MIR 37 118 -150 1 1520 227 297 108 21 chr4 122569042 122569135 -33060985 - MLT1N2 LTR MaLR -296 266 166 1 1520 306 0 0 0 chr4 122569303 122569337 -33060783 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1520 989 88 0 28 chr4 122569340 122569481 -33060639 - B1_Mus2 SINE Alu -6 141 5 1 1520 2424 172 34 5 chr4 122569765 122570173 -33059947 - MTC LTR MaLR -1 420 1 1 1520 837 281 30 0 chr4 122570214 122570417 -33059703 + ID_B1 SINE B4 16 224 0 1 1520 222 37 0 0 chr4 122570417 122570444 -33059676 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1520 475 287 0 68 chr4 122570492 122570638 -33059482 + RSINE1 SINE B4 11 146 -19 1 1520 491 306 54 102 chr4 122570835 122571188 -33058932 + ORR1E LTR MaLR 9 344 -15 1 1520 1297 179 161 0 chr4 122571486 122571765 -33058355 + ORR1B2 LTR MaLR 1 324 -43 1 1520 760 144 63 77 chr4 122571765 122571908 -33058212 + B1_Mus1 SINE Alu 2 142 -6 1 1520 394 337 66 84 chr4 122571920 122571990 -33058130 - B4A SINE B4 -8 284 233 1 1520 538 206 232 40 chr4 122571990 122572167 -33057953 - B3 SINE B2 -4 212 2 1 1520 394 337 66 84 chr4 122572167 122572323 -33057797 - B4A SINE B4 -60 232 63 1 1520 442 275 61 0 chr4 122572427 122572558 -33057562 - B1F SINE Alu -6 143 5 1 1520 240 337 12 0 chr4 122572725 122572802 -33057318 - MER63D DNA AcHobo -710 351 274 1 1520 610 261 81 22 chr4 122572802 122573025 -33057095 + MLT1D LTR MaLR 2 237 -268 1 1520 447 282 83 57 chr4 122573708 122573900 -33056220 + B3A SINE B2 2 198 0 1 1520 3272 65 2 0 chr4 122574110 122574509 -33055611 + MTB LTR MaLR 1 400 0 1 1520 1102 55 20 7 chr4 122574580 122574726 -33055394 + B1_Mus1 SINE Alu 1 148 0 1 1520 576 156 16 24 chr4 122574834 122574959 -33055161 - B3 SINE B2 -3 213 90 1 1520 445 242 0 0 chr4 122575090 122575181 -33054939 - B3 SINE B2 -124 92 2 1 1520 593 38 0 12 chr4 122575251 122575332 -33054788 + (GTTTG)n Simple_repeat Simple_repeat 2 81 0 1 1520 422 196 31 0 chr4 122575449 122575546 -33054574 - B1_Mur4 SINE Alu -50 100 1 1 1520 204 136 0 0 chr4 122575936 122575944 -33054176 + (T)n Simple_repeat Simple_repeat 1 8 0 2 1520 194 0 39 0 chr4 122575951 122575977 -33054143 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1520 1141 68 7 0 chr4 122575977 122576116 -33054004 - B1_Mus1 SINE Alu -7 141 2 2 1520 204 136 0 0 chr4 122576116 122576151 -33053969 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1520 351 219 0 0 chr4 122576406 122576479 -33053641 + B3 SINE B2 1 73 -143 2 1520 451 198 0 0 chr4 122576513 122576604 -33053516 + B1_Mur2 SINE Alu 52 142 -7 2 1520 518 149 7 7 chr4 122576811 122576946 -33053174 + GA-rich Low_complexity Low_complexity 1 135 0 2 1520 405 0 0 0 chr4 122577210 122577255 -33052865 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1520 1015 115 0 0 chr4 122577255 122577394 -33052726 - B1_Mur4 SINE Alu -11 139 1 2 1520 472 231 40 34 chr4 122577986 122578134 -33051986 + B1F SINE Alu 1 149 0 2 1520 1171 100 47 6 chr4 122578141 122578312 -33051808 + B2_Mm2 SINE B2 4 181 -14 2 1520 333 0 0 0 chr4 122579109 122579146 -33050974 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1520 683 250 13 13 chr4 122579216 122579370 -33050750 + B3A SINE B2 1 154 -44 2 1520 437 0 19 0 chr4 122579435 122579488 -33050632 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1520 3852 220 92 35 chr4 122579516 122580619 -33049501 + RMER12B LTR ERVK 8 1172 -232 2 1520 426 85 0 0 chr4 122580629 122580688 -33049432 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1520 462 215 0 123 chr4 122580700 122580854 -33049266 + RLTR21 LTR ERVK 1438 1572 0 2 1520 811 202 30 65 chr4 122580856 122581057 -33049063 + B3A SINE B2 2 195 -3 2 1520 435 344 36 0 chr4 122581163 122581384 -33048736 - MLT1H-int LTR MaLR -454 955 727 2 1520 250 293 48 91 chr4 122581411 122581576 -33048544 + ORR1E LTR MaLR 27 184 -175 2 1520 35 54 0 0 chr4 122581751 122581807 -33048313 + AT_rich Low_complexity Low_complexity 1 56 0 2 1520 225 0 0 0 chr4 122581977 122582002 -33048118 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1520 635 268 32 13 chr4 122582070 122582225 -33047895 + RSINE1 SINE B4 8 165 0 2 1520 432 0 0 0 chr4 122582234 122582282 -33047838 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 2 1520 891 250 191 50 chr4 122582712 122583335 -33046785 - L1MB8 LINE L1 -11 6167 5457 2 1520 678 114 0 66 chr4 122583402 122583524 -33046596 + B1_Mus1 SINE Alu 34 147 -1 2 1520 458 128 81 0 chr4 122583526 122583612 -33046508 + RLTR47_MM LTR ERV1 355 447 -85 2 1520 807 254 43 29 chr4 122583667 122583874 -33046246 - B3A SINE B2 -5 211 2 2 1520 246 132 0 0 chr4 122583923 122583961 -33046159 - L1MB8 LINE L1 -744 5440 5403 2 1520 216 0 0 0 chr4 122583979 122584003 -33046117 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1520 658 352 39 48 chr4 122584235 122584593 -33045527 - MLT1B LTR MaLR -8 382 28 2 1520 639 181 52 0 chr4 122584673 122584789 -33045331 - B1_Mur1 SINE Alu -27 122 1 2 1520 593 241 7 33 chr4 122584834 122584984 -33045136 - ID_B1 SINE B4 0 224 79 2 1520 538 255 22 23 chr4 122585046 122585220 -33044900 + B3A SINE B2 38 216 0 2 1520 532 235 178 18 chr4 122585226 122585395 -33044725 + B3A SINE B2 3 198 0 2 1520 23 54 0 0 chr4 122585416 122585453 -33044667 + AT_rich Low_complexity Low_complexity 1 37 0 2 1520 1351 77 16 5 chr4 122585457 122585641 -33044479 + B2_Mm2 SINE B2 1 186 -9 2 1520 650 145 137 0 chr4 122585692 122585816 -33044304 + B1_Mur1 SINE Alu 9 149 0 2 1520 203 88 29 0 chr4 122585836 122585870 -33044250 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1520 401 222 118 59 chr4 122586117 122586270 -33043850 - RSINE1 SINE B4 0 165 4 2 1520 259 25 24 24 chr4 122587309 122587350 -33042770 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1520 805 150 0 0 chr4 122587403 122587530 -33042590 - B1_Mus1 SINE Alu -10 138 12 2 1520 664 171 0 0 chr4 122587777 122587888 -33042232 - B1_Mur1 SINE Alu -38 111 1 2 1520 710 252 6 59 chr4 122587966 122588135 -33041985 - B3A SINE B2 -38 160 1 2 1520 301 281 10 14 chr4 122588232 122588328 -33041792 + MLT1F LTR MaLR 1 93 -467 2 1520 647 219 138 0 chr4 122589195 122589355 -33040765 + B3A SINE B2 1 182 -16 2 1520 228 231 0 0 chr4 122589367 122589445 -33040675 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1520 458 194 31 0 chr4 122589609 122589720 -33040400 + B3A SINE B2 1 118 -75 2 1520 750 212 45 25 chr4 122589987 122590185 -33039935 - B3 SINE B2 -6 210 9 2 1520 303 28 0 0 chr4 122590187 122590223 -33039897 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1520 244 186 0 0 chr4 122590246 122590289 -33039831 + tRNA-Ala-GCY_ tRNA tRNA 9 51 -24 2 1520 2531 123 25 25 chr4 122590393 122590834 -33039286 - RMER20A LTR ERVK -75 441 1 2 1520 1168 45 13 0 chr4 122590945 122591100 -33039020 - B2_Mm2 SINE B2 -38 157 1 2 1520 674 281 52 61 chr4 122592002 122592214 -33037906 - ID_B1 SINE B4 -1 223 14 2 1520 485 256 28 63 chr4 122592339 122592481 -33037639 - B1_Mur2 SINE Alu -12 137 1 2 1520 413 314 19 76 chr4 122592481 122592574 -33037546 - B4 SINE B4 -211 81 1 2 1520 1146 212 10 5 chr4 122592609 122592817 -33037303 + B3 SINE B2 3 211 -5 2 1520 911 252 28 14 chr4 122593123 122593336 -33036784 - B3 SINE B2 0 216 1 2 1520 279 324 114 59 chr4 122593663 122593899 -33036221 + ORR1E LTR MaLR 1 249 -110 2 1520 322 342 0 18 chr4 122593995 122594108 -33036012 + MTD LTR MaLR 6 116 -303 2 1520 332 221 35 0 chr4 122594114 122594200 -33035920 + MTD-int LTR MaLR 935 1023 -235 2 1520 1179 155 72 5 chr4 122594287 122594481 -33035639 + Lx6 LINE L1 6417 6623 -837 2 1520 1768 147 21 94 chr4 122594488 122594870 -33035250 + ORR1B1 LTR MaLR 41 394 0 2 1520 3948 177 63 8 chr4 122594874 122595569 -33034551 + Lx7 LINE L1 6639 7366 -330 2 1520 1142 82 0 0 chr4 122595569 122595715 -33034405 - B1_Mm SINE Alu 0 147 2 2 1520 3948 177 63 8 chr4 122595715 122595754 -33034366 + Lx7 LINE L1 7367 7412 -284 2 1520 946 204 70 54 chr4 122595780 122596099 -33034021 + Lx7 LINE L1 7106 7619 -77 2 1520 1563 126 93 25 chr4 122596132 122596410 -33033710 - Lx4A LINE L1 -3 7055 6759 2 1520 293 159 115 21 chr4 122596417 122596513 -33033607 + MTD-int LTR MaLR 1148 1252 -6 2 1520 1496 213 47 57 chr4 122596524 122596928 -33033192 + MTD LTR MaLR 6 405 -14 2 1520 323 253 38 0 chr4 122597042 122597121 -33032999 + B4A SINE B4 6 87 -205 2 1520 837 100 0 0 chr4 122597140 122597270 -33032850 + (GGAA)n Simple_repeat Simple_repeat 4 133 0 2 1520 642 219 42 36 chr4 122597270 122597436 -33032684 + B4 SINE B4 76 242 -50 2 1520 363 263 127 24 chr4 122597529 122597759 -33032361 - B4A SINE B4 -3 289 6 2 1520 985 59 7 7 chr4 122597804 122597941 -33032179 + B2_Mm2 SINE B2 1 137 -58 2 1520 726 72 0 0 chr4 122597944 122598041 -33032079 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1520 2986 38 3 0 chr4 122598496 122598839 -33031281 - ORR1A1 LTR MaLR 0 346 3 2 1520 772 242 34 34 chr4 122599176 122599385 -33030735 - B3 SINE B2 0 216 8 2 1520 247 326 35 42 chr4 122599407 122599551 -33030569 + LTR85b LTR Gypsy? 616 758 -26 2 1520 201 39 0 0 chr4 122599585 122599611 -33030509 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1520 321 282 45 18 chr4 122600588 122600700 -33029420 - MLT1A1 LTR MaLR 0 408 294 2 1520 481 242 38 68 chr4 122600896 122601029 -33029091 - RSINE1 SINE B4 -31 134 6 2 1520 576 320 125 12 chr4 122601296 122601418 -33028702 - LTR33B LTR ERVL -133 370 233 2 1520 247 0 127 0 chr4 122601418 122601481 -33028639 + (GCTG)n Simple_repeat Simple_repeat 1 71 0 2 1520 576 320 125 12 chr4 122601481 122601678 -33028442 - LTR33B LTR ERVL -271 232 17 2 1520 1070 106 0 24 chr4 122601780 122601945 -33028175 + B2_Mm2 SINE B2 1 161 -34 2 1520 189 0 0 0 chr4 122601945 122601966 -33028154 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1520 248 181 0 12 chr4 122601994 122602078 -33028042 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1520 206 192 19 0 chr4 122602081 122602133 -33027987 + CT-rich Low_complexity Low_complexity 1 53 0 2 1520 221 198 0 12 chr4 122602136 122602218 -33027902 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1520 239 93 0 23 chr4 122602306 122602350 -33027770 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1520 206 154 0 25 chr4 122602382 122602422 -33027698 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1520 192 163 0 0 chr4 122602444 122602487 -33027633 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1520 251 122 0 20 chr4 122602509 122602559 -33027561 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1520 191 189 0 19 chr4 122602581 122602635 -33027485 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1520 321 62 0 59 chr4 122602653 122602704 -33027416 - HAL1-3A_ME LINE L1 -836 2022 1975 2 1520 230 143 0 20 chr4 122602741 122602791 -33027329 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1520 252 0 0 0 chr4 122603583 122603611 -33026509 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1520 396 285 23 8 chr4 122603724 122603855 -33026265 + LTR33 LTR ERVL 383 515 0 2 1520 257 233 0 14 chr4 122603866 122603940 -33026180 + MER20B DNA MER1_type 687 759 -24 2 1520 1628 37 5 0 chr4 122604285 122604476 -33025644 + B2_Mm1t SINE B2 2 193 0 2 1520 1684 161 6 32 chr4 122604555 122604887 -33025233 - ORR1D1 LTR MaLR 0 374 41 2 1520 615 188 0 39 chr4 122604986 122605138 -33024982 - ORR1D1 LTR MaLR -257 137 1 2 1520 1314 241 132 44 chr4 122605230 122605389 -33024731 + Lx8 LINE L1 6629 6812 -661 2 1520 1826 156 98 12 chr4 122605389 122605727 -33024393 - ORR1B2 LTR MaLR 0 367 1 2 1520 1314 241 132 44 chr4 122605727 122606044 -33024076 + Lx8 LINE L1 6813 7147 -326 2 1520 305 258 75 81 chr4 122606042 122606215 -33023905 + Lx8 LINE L1 7301 7472 -1 2 1520 733 268 77 5 chr4 122606263 122606429 -33023691 + B3 SINE B2 1 165 -51 2 1520 390 42 0 0 chr4 122606429 122606477 -33023643 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2 1520 733 268 77 5 chr4 122606477 122606505 -33023615 + B3 SINE B2 166 208 -8 2 1520 405 0 0 0 chr4 122606810 122606855 -33023265 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1520 256 239 109 0 chr4 122607121 122607213 -33022907 + L1M5 LINE L1 4265 4366 -1780 2 1520 1856 162 35 27 chr4 122607592 122607959 -33022161 + ORR1C1 LTR MaLR 1 370 -8 2 1520 390 74 0 0 chr4 122608002 122608056 -33022064 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1520 1285 87 17 0 chr4 122608294 122608467 -33021653 + B2_Mm2 SINE B2 5 180 -15 3 1520 378 0 0 0 chr4 122608474 122608516 -33021604 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1520 34 72 0 0 chr4 122608795 122608864 -33021256 + AT_rich Low_complexity Low_complexity 1 69 0 3 1520 693 235 85 20 chr4 122608959 122609159 -33020961 - B3 SINE B2 -2 214 2 3 1520 462 253 50 40 chr4 122609162 122609324 -33020796 + L1M5 LINE L1 4463 4624 -1522 2 1520 383 0 21 0 chr4 122609324 122609371 -33020749 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1520 207 0 0 0 chr4 122609371 122609393 -33020727 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1520 462 247 93 57 chr4 122609393 122609452 -33020668 + L1M5 LINE L1 4623 4693 -1453 2 1520 514 261 88 29 chr4 122609498 122609668 -33020452 - B3A SINE B2 -15 183 4 3 1520 336 282 12 0 chr4 122610045 122610130 -33019990 - B3 SINE B2 -111 105 20 3 1520 1119 171 22 79 chr4 122610854 122611082 -33019038 + B3 SINE B2 2 216 0 3 1520 783 213 7 0 chr4 122611102 122611243 -33018877 + B1F2 SINE Alu 3 144 -5 3 1520 230 315 64 21 chr4 122612219 122612313 -33017807 + RMER10A LTR ERVL 318 415 -27 3 1520 1427 262 133 16 chr4 122613170 122613612 -33016508 + MER82 DNA MER2_type 1 494 -159 3 1520 216 0 0 0 chr4 122613743 122613767 -33016353 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1520 270 0 0 0 chr4 122614139 122614169 -33015951 + (TATG)n Simple_repeat Simple_repeat 2 31 0 3 1520 1294 218 48 70 chr4 122614235 122614636 -33015484 + MTE2a LTR MaLR 14 405 -14 3 1520 21 0 0 0 chr4 122614734 122614755 -33015365 + AT_rich Low_complexity Low_complexity 1 21 0 3 1520 643 247 157 16 chr4 122614757 122614794 -33015326 - B3 SINE B2 -4 212 166 3 1520 417 20 0 0 chr4 122614794 122614844 -33015276 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1520 643 247 157 16 chr4 122614844 122614991 -33015129 - B3 SINE B2 -51 165 2 3 1520 2686 106 60 5 chr4 122615140 122615539 -33014581 + MTC LTR MaLR 1 421 0 3 1520 324 244 0 0 chr4 122615584 122615674 -33014446 + GA-rich Low_complexity Low_complexity 4 93 0 3 1520 1124 115 157 0 chr4 122615737 122615928 -33014192 - URR1A DNA MER1_type 0 226 6 3 1520 479 291 136 24 chr4 122615928 122615983 -33014137 + CYRA11_Mm Unknown Y-chromosome 172 445 -172 3 1520 247 284 27 0 chr4 122616400 122616474 -33013646 + MER82 DNA MER2_type 578 653 0 3 1520 317 294 106 60 chr4 122616530 122616726 -33013394 + MTEb LTR MaLR 67 271 -99 3 1520 225 0 0 0 chr4 122616778 122616803 -33013317 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1520 316 233 40 113 chr4 122616803 122616953 -33013167 + RLTR15 LTR ERVK 49 187 -172 3 1520 507 107 0 0 chr4 122617084 122617159 -33012961 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 3 1520 324 240 0 39 chr4 122617165 122617243 -33012877 + MTEb LTR MaLR 296 370 -9 3 1520 479 226 115 73 chr4 122617486 122617677 -33012443 + MER3 DNA MER1_type 11 209 0 3 1520 1259 34 0 13 chr4 122617731 122617880 -33012240 - B1_Mus1 SINE Alu -1 147 1 3 1520 270 0 0 0 chr4 122617956 122617986 -33012134 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1520 329 303 99 69 chr4 122617999 122618130 -33011990 - L1MC LINE L1 -1883 4263 4129 3 1520 322 247 12 12 chr4 122618225 122618311 -33011809 - PB1D10 SINE Alu -19 98 13 3 1520 215 231 0 0 chr4 122618420 122618459 -33011661 - ID4_ SINE ID -8 75 37 3 1520 906 152 6 11 chr4 122618798 122618977 -33011143 + GA-rich Low_complexity Low_complexity 3 180 0 3 1520 317 277 11 57 chr4 122619037 122619125 -33010995 + RSINE1 SINE B4 82 165 0 3 1520 39 0 0 0 chr4 122619142 122619181 -33010939 + AT_rich Low_complexity Low_complexity 1 39 0 3 1520 180 97 0 0 chr4 122619200 122619231 -33010889 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 1520 189 328 16 0 chr4 122619588 122619649 -33010471 + L2a LINE L2 2783 2844 -575 3 1520 183 205 0 0 chr4 122620285 122620324 -33009796 + T-rich Low_complexity Low_complexity 1 39 0 3 1520 363 209 30 0 chr4 122620354 122620421 -33009699 - B1_Mm SINE Alu -16 131 63 3 1520 225 364 143 45 chr4 122620472 122620737 -33009383 + L2 LINE L2 2775 3065 -354 3 1520 192 125 0 0 chr4 122620881 122620913 -33009207 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1520 678 192 100 0 chr4 122620919 122621049 -33009071 - B1_Mur1 SINE Alu -6 143 1 3 1520 348 24 0 0 chr4 122621071 122621112 -33009008 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1520 481 118 26 0 chr4 122621175 122621251 -33008869 - B3 SINE B2 -137 79 2 3 1520 528 248 72 20 chr4 122621308 122621460 -33008660 - RSINE1 SINE B4 -2 163 4 3 1520 993 150 0 0 chr4 122621490 122621637 -33008483 - B1_Mus1 SINE Alu 0 148 2 3 1520 201 259 56 0 chr4 122621702 122621756 -33008364 + L2a LINE L2 3338 3394 -32 3 1520 456 202 0 0 chr4 122622319 122622398 -33007722 - ID4 SINE ID -2 81 3 3 1520 189 0 0 0 chr4 122622421 122622442 -33007678 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 1520 258 343 0 0 chr4 122622474 122622541 -33007579 + ID4 SINE ID 3 69 -14 3 1520 649 307 59 5 chr4 122622785 122622988 -33007132 + MIR SINE MIR 12 225 -37 3 1520 287 259 85 12 chr4 122623279 122623361 -33006759 + MER63B DNA AcHobo 316 403 -33 3 1520 539 241 33 50 chr4 122623675 122623706 -33006414 - ID_B1 SINE B4 -39 253 149 3 1520 926 110 0 0 chr4 122623706 122623833 -33006287 - B1_Mus1 SINE Alu 0 148 22 3 1520 539 241 33 50 chr4 122623833 122623851 -33006269 - ID_B1 SINE B4 -39 148 80 3 1520 352 241 120 0 chr4 122624968 122625076 -33005044 + ID_B1 SINE B4 104 224 0 3 1520 906 163 7 33 chr4 122625178 122625330 -33004790 - B1_Mur2 SINE Alu 0 149 2 3 1520 951 103 29 14 chr4 122625398 122625536 -33004584 + B1_Mus1 SINE Alu 2 141 -7 3 1520 414 0 0 0 chr4 122625721 122625767 -33004353 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1520 1164 62 0 27 chr4 122626833 122626983 -33003137 + B1_Mm SINE Alu 2 147 0 3 1520 292 227 93 0 chr4 122628223 122628298 -33001822 + MIR SINE MIR 67 148 -114 3 1520 233 178 0 22 chr4 122628741 122628787 -33001333 + MIR SINE MIR 82 126 -82 3 1520 265 254 27 107 chr4 122628827 122628902 -33001218 + ID4_ SINE ID 2 70 -13 3 1520 561 267 13 20 chr4 122629909 122630058 -33000062 + RSINE1 SINE B4 4 151 -14 3 1520 357 276 110 17 chr4 122630110 122630228 -32999892 + MIRc SINE MIR 44 172 -96 3 1520 307 287 83 42 chr4 122630227 122630347 -32999773 - L2a LINE L2 -3 3423 3299 3 1520 244 324 73 7 chr4 122630358 122630495 -32999625 + L1MB4 LINE L1 5793 5938 -233 3 1520 297 330 54 11 chr4 122630533 122630625 -32999495 + RSINE1 SINE B4 42 137 -28 3 1520 294 241 68 152 chr4 122630664 122630755 -32999365 + L1MB4 LINE L1 5968 6054 -129 3 1520 654 184 80 14 chr4 122630755 122630893 -32999227 + B1_Mur4 SINE Alu 1 147 -3 3 1520 308 224 36 22 chr4 122630893 122630992 -32999128 + L1MB4 LINE L1 6049 6142 -41 3 1520 395 284 32 0 chr4 122630992 122631087 -32999033 + PB1D10 SINE Alu 1 98 -19 3 1520 908 198 129 6 chr4 122631115 122631293 -32998827 + B3 SINE B2 1 200 -16 3 1520 381 193 43 24 chr4 122631312 122631413 -32998707 - PB1D9 SINE Alu 0 147 43 3 1520 504 223 8 51 chr4 122631409 122631527 -32998593 + B1_Mur2 SINE Alu 36 148 -1 3 1520 298 239 60 0 chr4 122631657 122631730 -32998390 + ID4 SINE ID 25 103 -49 3 1520 334 242 266 21 chr4 122631771 122632067 -32998053 - L2a LINE L2 -163 3263 2877 3 1520 379 257 296 0 chr4 122633455 122633604 -32996516 - MIR SINE MIR -28 240 41 3 1520 237 33 0 0 chr4 122633891 122633921 -32996199 + (G)n Simple_repeat Simple_repeat 1 30 0 3 1520 933 104 15 0 chr4 122634225 122634360 -32995760 - B1_Mus2 SINE Alu -2 145 9 3 1520 686 246 17 94 chr4 122634402 122634635 -32995485 + ID_B1 SINE B4 8 222 -2 3 1520 881 127 41 21 chr4 122634495 122634640 -32995480 + B1_Mur2 SINE Alu 2 149 0 3 1520 215 180 0 44 chr4 122634856 122634935 -32995185 + MIRm SINE MIR 101 181 -95 3 1520 577 276 62 57 chr4 122635006 122635198 -32994922 - B3A SINE B2 -1 197 5 3 1520 387 105 0 0 chr4 122635230 122635287 -32994833 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1520 328 229 267 0 chr4 122635287 122635392 -32994728 - B1F2 SINE Alu -13 136 4 3 1520 362 224 184 0 chr4 122635510 122635608 -32994512 - PB1D10 SINE Alu -1 116 1 3 1520 601 176 126 0 chr4 122636894 122637013 -32993107 + B1_Mur3 SINE Alu 4 137 -12 3 1520 327 85 0 0 chr4 122637013 122637060 -32993060 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1520 222 258 94 31 chr4 122638611 122638707 -32991413 - MIR SINE MIR -77 131 30 3 1520 343 302 108 15 chr4 122638961 122639149 -32990971 - MIR SINE MIR -46 216 3 3 1520 728 22 11 0 chr4 122639235 122639325 -32990795 + (GAAAA)n Simple_repeat Simple_repeat 1 91 0 3 1520 615 327 26 18 chr4 122640182 122640409 -32989711 - L3 LINE CR1 -498 3991 3763 3 1520 214 326 20 98 chr4 122640628 122640781 -32989339 - MIRb SINE MIR -13 255 115 3 1520 510 314 119 6 chr4 122641278 122641438 -32988682 + ID_B1 SINE B4 1 178 -46 3 1520 760 144 0 158 chr4 122641438 122641571 -32988549 + B1_Mur4 SINE Alu 10 120 -30 3 1520 770 70 0 246 chr4 122641571 122641742 -32988378 - B1_Mm SINE Alu -18 129 1 3 1520 760 144 0 158 chr4 122641742 122641773 -32988347 + B1_Mur4 SINE Alu 121 148 -2 3 1520 25 0 0 0 chr4 122641818 122641843 -32988277 + AT_rich Low_complexity Low_complexity 1 25 0 3 1520 1144 233 21 39 chr4 122641843 122642124 -32987996 + B4A SINE B4 1 276 -16 3 1520 332 143 14 0 chr4 122642176 122642246 -32987874 + CT-rich Low_complexity Low_complexity 1 71 0 3 1520 1056 128 160 5 chr4 122642322 122642510 -32987610 + URR1A DNA MER1_type 1 217 -9 3 1520 1277 41 0 0 chr4 122642512 122642658 -32987462 + B1_Mus2 SINE Alu 2 147 0 3 1520 677 215 15 0 chr4 122642831 122642961 -32987159 + B1_Mur2 SINE Alu 17 148 -1 3 1520 204 40 0 0 chr4 122642976 122643001 -32987119 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3 1520 193 224 0 94 chr4 122644424 122644488 -32985632 + MIRc SINE MIR 157 214 -54 4 1520 231 231 154 0 chr4 122644512 122644590 -32985530 + Charlie19a DNA Charlie 177 266 -120 4 1520 503 231 116 0 chr4 122644597 122644718 -32985402 + B1_Mur4 SINE Alu 6 140 -10 4 1520 375 23 0 0 chr4 122644718 122644762 -32985358 + (CATA)n Simple_repeat Simple_repeat 2 45 0 4 1520 1269 104 35 0 chr4 122644897 122645070 -32985050 + B2_Mm1t SINE B2 1 179 -14 4 1520 322 131 402 29 chr4 122645102 122645204 -32984916 + B2_Mm2 SINE B2 47 186 -9 4 1520 1154 82 14 0 chr4 122645849 122645995 -32984125 - B1_Mur3 SINE Alu 0 149 2 4 1520 1674 42 0 0 chr4 122646009 122646202 -32983918 - B2_Mm1t SINE B2 0 193 1 4 1520 759 67 29 0 chr4 122646266 122646370 -32983750 + PB1D9 SINE Alu 9 115 -5 4 1520 1228 118 17 0 chr4 122646370 122646548 -32983572 - B2_Mm2 SINE B2 -14 181 1 4 1520 289 190 84 48 chr4 122646583 122646666 -32983454 + B1_Mus2 SINE Alu 62 147 0 4 1520 594 191 62 16 chr4 122646688 122646816 -32983304 + B1F2 SINE Alu 14 147 -2 4 1520 379 268 172 0 chr4 122646838 122647035 -32983085 + B4A SINE B4 2 232 -60 4 1520 719 255 26 7 chr4 122647039 122647193 -32982927 + RSINE1 SINE B4 9 165 0 4 1520 324 293 0 62 chr4 122647209 122647289 -32982831 + B4A SINE B4 216 290 -2 4 1520 209 208 21 0 chr4 122647293 122647341 -32982779 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1520 976 241 18 18 chr4 122647345 122647565 -32982555 + ID_B1 SINE B4 3 222 -2 4 1520 510 244 59 0 chr4 122647620 122647739 -32982381 + ID_B1 SINE B4 91 216 -8 4 1520 531 156 11 53 chr4 122648202 122648297 -32981823 - B1_Mur3 SINE Alu 0 149 59 4 1520 562 188 0 0 chr4 122648301 122648397 -32981723 - RLTR15 LTR ERVK -3 356 261 4 1520 264 30 0 0 chr4 122649275 122649308 -32980812 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1520 392 282 146 56 chr4 122649319 122649586 -32980534 - B4 SINE B4 -1 291 1 4 1520 838 206 0 14 chr4 122649845 122649993 -32980127 + B1_Mus2 SINE Alu 1 146 -1 4 1520 368 275 7 0 chr4 122650473 122650611 -32979509 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 1520 774 170 8 23 chr4 122650589 122650848 -32979272 + (CATA)n Simple_repeat Simple_repeat 1 255 0 4 1520 567 66 0 0 chr4 122651333 122651409 -32978711 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 4 1520 400 212 0 36 chr4 122651409 122651485 -32978635 - ID4_ SINE ID -9 74 1 4 1520 1280 106 32 0 chr4 122651486 122651674 -32978446 - B2_Mm2 SINE B2 0 195 2 4 1520 284 279 89 78 chr4 122651679 122651718 -32978402 - B2_Mm1t SINE B2 -6 187 7 4 1520 760 236 21 0 chr4 122651718 122651858 -32978262 - RSINE1 SINE B4 -15 150 8 4 1520 198 143 0 0 chr4 122651877 122651912 -32978208 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1520 329 345 18 9 chr4 122652062 122652173 -32977947 - B4A SINE B4 -172 120 9 4 1520 298 328 40 16 chr4 122652211 122652335 -32977785 - B1F SINE Alu -2 147 21 4 1520 648 312 51 8 chr4 122652932 122653168 -32976952 - MIR SINE MIR -1 261 16 4 1520 240 43 65 0 chr4 122653455 122653501 -32976619 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 4 1520 197 65 0 31 chr4 122653704 122653736 -32976384 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 1520 820 173 7 21 chr4 122653762 122653904 -32976216 - B1_Mur4 SINE Alu -10 140 1 4 1520 545 179 27 45 chr4 122654465 122654576 -32975544 + RSINE1 SINE B4 3 111 -54 4 1520 595 305 103 45 chr4 122654601 122654893 -32975227 - MLT1J LTR MaLR -95 417 109 4 1520 23 0 0 0 chr4 122654893 122654916 -32975204 + AT_rich Low_complexity Low_complexity 1 23 0 4 1520 1076 242 14 0 chr4 122655107 122655326 -32974794 - ID_B1 SINE B4 0 224 3 4 1520 198 0 0 0 chr4 122655335 122655357 -32974763 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1520 530 271 100 89 chr4 122655458 122655624 -32974496 - B4A SINE B4 -30 262 86 4 1520 772 189 211 0 chr4 122655624 122655799 -32974321 - B3 SINE B2 0 216 5 4 1520 530 271 100 89 chr4 122655799 122655891 -32974229 - B4A SINE B4 -207 85 1 4 1520 228 135 0 0 chr4 122656832 122656869 -32973251 + (ATG)n Simple_repeat Simple_repeat 1 37 0 4 1520 626 192 120 0 chr4 122656869 122656994 -32973126 - B1_Mur3 SINE Alu -8 141 2 4 1520 788 151 8 0 chr4 122657576 122657702 -32972418 - B1_Mur2 SINE Alu -2 147 21 4 1520 421 257 48 119 chr4 122657702 122657742 -32972378 - B4 SINE B4 -67 223 70 4 1520 666 174 86 14 chr4 122657956 122658096 -32972024 + B1_Mur4 SINE Alu 1 150 0 4 1520 204 364 114 20 chr4 122658603 122658945 -32971175 - L2 LINE L2 -488 2931 2558 4 1520 22 0 0 0 chr4 122660021 122660043 -32970077 + AT_rich Low_complexity Low_complexity 1 22 0 4 1520 252 0 0 0 chr4 122660235 122660263 -32969857 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1520 249 247 106 53 chr4 122660308 122660402 -32969718 - MER102a DNA MER1_type -183 147 49 4 1520 211 277 33 78 chr4 122661338 122661428 -32968692 + B4A SINE B4 2 87 -205 4 1520 425 19 19 0 chr4 122661443 122661497 -32968623 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1520 349 260 14 0 chr4 122662026 122662099 -32968021 - MER63B DNA AcHobo -49 387 314 4 1520 687 256 34 34 chr4 122662157 122662214 -32967906 - MER63B DNA AcHobo -230 206 150 4 1520 399 240 120 0 chr4 122662214 122662314 -32967806 - PB1D10 SINE Alu -5 112 1 4 1520 687 256 34 34 chr4 122662314 122662462 -32967658 - MER63B DNA AcHobo -287 149 1 4 1520 1033 117 0 7 chr4 122662714 122662860 -32967260 + B1_Mur4 SINE Alu 1 145 -5 4 1520 989 114 0 12 chr4 122662862 122663022 -32967098 + (GGAA)n Simple_repeat Simple_repeat 4 161 0 4 1520 433 299 96 103 chr4 122663107 122663398 -32966722 + B4 SINE B4 4 292 0 4 1520 609 161 3 48 chr4 122663398 122663758 -32966362 + (CA)n Simple_repeat Simple_repeat 1 343 0 4 1520 584 246 38 71 chr4 122663762 122663946 -32966174 + B3A SINE B2 5 182 -16 4 1520 350 260 190 44 chr4 122663971 122664108 -32966012 + RSINE1 SINE B4 3 159 -6 4 1520 450 0 0 0 chr4 122664490 122664540 -32965580 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 1520 185 291 105 63 chr4 122664719 122664862 -32965258 + L2b LINE L2 3036 3184 -191 4 1520 206 208 38 0 chr4 122665084 122665137 -32964983 + L2b LINE L2 3098 3152 -223 4 1520 1329 70 37 21 chr4 122665343 122665533 -32964587 + B2_Mm2 SINE B2 1 193 -2 4 1520 773 100 0 0 chr4 122665538 122665648 -32964472 + B1_Mus1 SINE Alu 39 148 0 4 1520 202 239 22 0 chr4 122665648 122665694 -32964426 + GA-rich Low_complexity Low_complexity 2 48 0 4 1520 638 255 69 46 chr4 122665716 122665934 -32964186 + B4A SINE B4 2 224 -68 4 1520 557 158 123 2 chr4 122665961 122666086 -32964034 + B1_Mur3 SINE Alu 1 149 0 4 1520 245 326 10 52 chr4 122666118 122666215 -32963905 + B3 SINE B2 113 205 -11 4 1520 211 326 0 107 chr4 122666226 122666329 -32963791 + B4 SINE B4 43 134 -158 4 1520 269 273 32 74 chr4 122666268 122666280 -32963840 + MT2B2 LTR ERVL 151 158 -426 4 1520 509 262 33 0 chr4 122666280 122666402 -32963718 + B1F SINE Alu 1 126 -23 4 1520 313 269 209 65 chr4 122666443 122666465 -32963655 - B4A SINE B4 -49 243 86 4 1520 438 224 267 0 chr4 122666465 122666581 -32963539 - B1_Mur1 SINE Alu -2 147 1 4 1520 506 220 40 13 chr4 122666581 122666732 -32963388 - RCHARR1 DNA MER1_type -36 938 784 4 1520 250 267 42 62 chr4 122666733 122666829 -32963291 + B1_Mm SINE Alu 2 95 -52 4 1520 657 193 0 0 chr4 122666852 122666987 -32963133 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1520 1085 48 34 14 chr4 122666989 122667136 -32962984 - B2_Mm2 SINE B2 -45 150 1 4 1520 254 92 4 91 chr4 122667255 122667310 -32962810 + B2_Mm2 SINE B2 1 51 -142 4 1520 301 197 0 0 chr4 122667344 122667405 -32962715 - B1_Mur3 SINE Alu -6 143 83 4 1520 309 320 81 93 chr4 122667412 122667660 -32962460 + HAL1 LINE L1 802 1046 -1461 4 1520 334 331 137 0 chr4 122667660 122667784 -32962336 + B1F1 SINE Alu 7 147 -2 4 1520 31 26 0 0 chr4 122667851 122667889 -32962231 + AT_rich Low_complexity Low_complexity 1 38 0 4 1520 1299 276 83 38 chr4 122668221 122668860 -32961260 + HAL1 LINE L1 1376 2043 -464 4 1520 577 262 14 28 chr4 122668947 122669092 -32961028 + RSINE1 SINE B4 8 150 -15 4 1520 276 30 0 0 chr4 122669099 122669132 -32960988 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1520 316 211 18 0 chr4 122669166 122669223 -32960897 - RSINE1 SINE B4 -105 60 3 4 1520 240 111 0 0 chr4 122669310 122669346 -32960774 + (C)n Simple_repeat Simple_repeat 1 36 0 4 1520 399 175 0 31 chr4 122669375 122669440 -32960680 + PB1D7 SINE Alu 56 118 -2 4 1520 414 225 32 53 chr4 122669463 122669557 -32960563 + PB1D10 SINE Alu 26 117 0 4 1520 541 231 8 8 chr4 122669598 122669716 -32960404 + ID_B1 SINE B4 107 224 0 4 1520 765 235 0 0 chr4 122669725 122669857 -32960263 + RSINE1 SINE B4 1 132 -33 4 1520 207 114 0 0 chr4 122669863 122669898 -32960222 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1520 455 159 17 17 chr4 122669922 122670037 -32960083 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1520 758 289 97 37 chr4 122670089 122670387 -32959733 - MamRep605 Unknown Unknown -84 792 477 4 1520 307 293 0 12 chr4 122670598 122670681 -32959439 + ID4 SINE ID 2 83 0 4 1520 257 179 68 43 chr4 122670693 122670810 -32959310 + (GTTTG)n Simple_repeat Simple_repeat 5 124 0 4 1520 1164 55 7 0 chr4 122670810 122670956 -32959164 - B1_Mus1 SINE Alu 0 148 2 4 1520 288 252 173 10 chr4 122670962 122671066 -32959054 - PB1 SINE Alu -2 125 5 4 1520 1535 58 21 0 chr4 122671160 122671351 -32958769 + B2_Mm2 SINE B2 1 195 0 5 1520 231 194 0 0 chr4 122671373 122671409 -32958711 - B1F SINE Alu -112 37 2 5 1520 247 200 0 0 chr4 122671415 122671460 -32958660 + PB1 SINE Alu 81 125 -2 5 1520 264 272 148 9 chr4 122671491 122671606 -32958514 + MLT1N2 LTR MaLR 424 554 -8 5 1520 22 35 0 0 chr4 122673249 122673278 -32956842 + GC_rich Low_complexity Low_complexity 1 29 0 5 1520 183 222 0 0 chr4 122674842 122674878 -32955242 - MIRb SINE MIR -116 152 117 5 1520 187 222 14 87 chr4 122675617 122675686 -32954434 + MIR3 SINE MIR 114 177 -31 5 1520 243 146 0 0 chr4 122677381 122677422 -32952698 + (GGA)n Simple_repeat Simple_repeat 3 43 0 5 1520 198 71 0 0 chr4 122679488 122679516 -32950604 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1520 252 282 179 12 chr4 122679930 122680077 -32950043 + MIR SINE MIR 18 186 -82 5 1520 550 148 176 0 chr4 122680243 122680351 -32949769 - B1_Mur2 SINE Alu -10 139 13 5 1520 505 238 139 0 chr4 122680357 122680479 -32949641 - B1_Mur1 SINE Alu 0 149 11 5 1520 281 261 39 107 chr4 122680412 122680515 -32949605 - MT2B LTR ERVL -361 240 145 5 1520 841 142 0 0 chr4 122680746 122680866 -32949254 + URR1A DNA MER1_type 20 139 -87 5 1520 263 282 25 37 chr4 122681115 122681196 -32948924 + ID4_ SINE ID 1 80 -3 5 1520 1106 191 23 19 chr4 122681491 122681705 -32948415 - B3 SINE B2 -1 215 1 5 1520 263 28 0 27 chr4 122681780 122681817 -32948303 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 1520 449 293 63 24 chr4 122681817 122681943 -32948177 - ID_B1 SINE B4 -10 214 84 5 1520 446 174 264 7 chr4 122681968 122682126 -32947994 + B3 SINE B2 1 198 0 5 23 399 270 15 73 chr4 122683274 122683410 -32946710 + MIR SINE MIR 53 180 -82 5 1521 970 175 55 28 chr4 122683473 122683655 -32946465 + B3 SINE B2 2 188 -28 5 1521 252 0 0 0 chr4 122683655 122683683 -32946437 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1521 487 243 39 113 chr4 122683683 122683704 -32946416 + B2_Mm2 SINE B2 173 190 -5 5 1521 1197 55 0 7 chr4 122683708 122683856 -32946264 + B1_Mm SINE Alu 1 147 0 5 1521 723 192 62 0 chr4 122683916 122684046 -32946074 - B1_Mur4 SINE Alu -10 140 3 5 1521 398 259 8 77 chr4 122683944 122684061 -32946059 - MT2B LTR ERVL -343 258 150 5 1521 438 249 188 94 chr4 122684112 122684378 -32945742 + B4A SINE B4 2 292 0 5 1521 593 256 7 21 chr4 122684691 122684831 -32945289 - B1F2 SINE Alu -9 140 3 5 1521 648 156 163 8 chr4 122684847 122684976 -32945144 - B1_Mur4 SINE Alu 0 150 2 5 1521 312 281 97 0 chr4 122684990 122685104 -32945016 - PB1 SINE Alu -2 125 1 5 1521 1959 150 58 131 chr4 122685347 122685664 -32944456 - MTC LTR MaLR 0 421 121 5 1521 1028 82 0 15 chr4 122685664 122685801 -32944319 + B1_Mus1 SINE Alu 2 136 -12 5 1521 1043 120 0 6 chr4 122685804 122685972 -32944148 + (GAA)n Simple_repeat Simple_repeat 2 168 0 5 1521 1959 150 58 131 chr4 122685972 122686102 -32944018 - MTC LTR MaLR -301 120 3 5 1521 282 292 28 0 chr4 122686423 122686495 -32943625 + ID2 SINE ID 4 77 -6 5 1521 531 56 0 0 chr4 122686528 122686599 -32943521 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1521 522 0 0 0 chr4 122686658 122686716 -32943404 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1521 459 0 0 0 chr4 122686716 122686766 -32943354 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1521 294 217 42 35 chr4 122686891 122686987 -32943133 + PB1D7 SINE Alu 35 120 -7 5 1521 513 0 0 0 chr4 122686995 122687052 -32943068 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1521 545 292 29 21 chr4 122687058 122687198 -32942922 + RSINE1 SINE B4 8 148 -17 5 1521 223 314 73 51 chr4 122687198 122687235 -32942885 + B2_Mm2 SINE B2 7 187 -8 5 1521 308 155 14 0 chr4 122687292 122687363 -32942757 + GA-rich Low_complexity Low_complexity 2 73 0 5 1521 909 285 89 47 chr4 122687620 122688003 -32942117 + MLT1C LTR MaLR 65 463 -4 5 1521 1974 129 9 49 chr4 122688167 122688494 -32941626 + ORR1A3 LTR MaLR 6 319 -7 5 1521 569 231 46 0 chr4 122688494 122688624 -32941496 - B1_Mur1 SINE Alu -11 138 3 5 1521 378 0 0 0 chr4 122688802 122688844 -32941276 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1521 267 31 0 0 chr4 122688844 122688875 -32941245 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1521 1213 68 0 0 chr4 122688889 122689036 -32941084 + B1_Mm SINE Alu 1 147 0 5 1521 1288 242 74 0 chr4 122689052 122689321 -32940799 + B4A SINE B4 1 289 -3 5 1521 297 0 0 0 chr4 122689345 122689378 -32940742 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1521 1209 55 7 0 chr4 122689397 122689542 -32940578 + B1_Mus1 SINE Alu 3 148 0 5 1521 384 92 22 22 chr4 122689677 122689766 -32940354 + (TTTTG)n Simple_repeat Simple_repeat 1 89 0 5 1521 1197 62 0 0 chr4 122689767 122689913 -32940207 - B1_Mm SINE Alu -1 146 1 5 1521 612 262 0 0 chr4 122690154 122690280 -32939840 - B1F1 SINE Alu -13 136 11 5 1521 378 252 8 57 chr4 122690306 122690428 -32939692 + PB1D10 SINE Alu 1 116 -1 5 1521 22 56 0 0 chr4 122690495 122690531 -32939589 + GC_rich Low_complexity Low_complexity 1 36 0 5 1521 260 233 64 64 chr4 122691920 122692009 -32938111 + RMER17C LTR ERVK 1 83 -327 5 1521 185 0 40 0 chr4 122692009 122692034 -32938086 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1521 520 230 56 99 chr4 122692034 122692286 -32937834 + RMER17C LTR ERVK 84 393 -17 5 1521 331 214 42 14 chr4 122692345 122692416 -32937704 - ID2 SINE ID -10 73 1 5 1521 224 337 20 50 chr4 122692547 122692647 -32937473 - MIRb SINE MIR 0 268 172 5 1521 261 267 68 22 chr4 122692693 122692784 -32937336 + BC1_Mm scRNA scRNA 1 93 -59 5 1521 437 0 19 0 chr4 122692906 122692959 -32937161 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1521 493 234 11 0 chr4 122692972 122693066 -32937054 - RSINE1 SINE B4 -65 100 6 5 1521 292 327 42 59 chr4 122693430 122693619 -32936501 - L2b LINE L2 -5 3382 3192 5 1521 198 322 22 22 chr4 122694252 122694344 -32935776 - MIR3 SINE MIR -51 157 66 5 1521 182 278 37 0 chr4 122694994 122695048 -32935072 - L2c LINE L2 -8 3379 3324 5 1521 216 284 42 56 chr4 122695612 122695683 -32934437 + B1F1 SINE Alu 1 70 -79 5 1521 1017 253 128 67 chr4 122695842 122696011 -32934109 - Lx8 LINE L1 -250 7223 7025 5 1521 417 39 0 0 chr4 122696011 122696062 -32934058 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 5 1521 1294 157 9 33 chr4 122696068 122696279 -32933841 - B3 SINE B2 -10 206 1 5 1521 1017 253 128 67 chr4 122696279 122696491 -32933629 - Lx8 LINE L1 -449 7024 6811 5 1521 464 170 33 43 chr4 122697079 122697171 -32932949 - PB1D10 SINE Alu 0 117 27 5 1521 899 199 80 5 chr4 122697227 122697414 -32932706 - B3 SINE B2 -2 214 14 5 1521 46 16 0 16 chr4 122697627 122697642 -32932478 + AT_rich Low_complexity Low_complexity 1 15 0 5 1521 955 117 14 14 chr4 122697642 122697789 -32932331 - B1_Mus1 SINE Alu 0 148 2 5 1521 46 16 0 16 chr4 122697789 122697837 -32932283 + AT_rich Low_complexity Low_complexity 1 48 0 5 1521 705 165 25 0 chr4 122697910 122698031 -32932089 - B1_Mur4 SINE Alu 0 150 27 5 1521 812 265 17 0 chr4 122698032 122698213 -32931907 - B3 SINE B2 -32 184 1 5 1521 23 0 0 0 chr4 122698218 122698241 -32931879 + AT_rich Low_complexity Low_complexity 1 23 0 5 1521 509 264 41 29 chr4 122698253 122698425 -32931695 - B3A SINE B2 -14 184 11 5 1521 1198 55 0 7 chr4 122698553 122698701 -32931419 - B1_Mus2 SINE Alu 0 147 1 5 1521 504 274 61 23 chr4 122698862 122698991 -32931129 + ID_B1 SINE B4 78 211 -13 5 1521 654 255 7 0 chr4 122698991 122699132 -32930988 + RSINE1 SINE B4 1 142 -23 5 1521 473 253 10 10 chr4 122699472 122699568 -32930552 - PB1 SINE Alu -1 126 31 5 1521 1263 100 17 0 chr4 122699591 122699771 -32930349 - B2_Mm2 SINE B2 -11 184 2 5 1521 590 202 0 9 chr4 122699897 122700007 -32930113 - B1_Mur4 SINE Alu -27 123 15 5 1521 680 102 144 38 chr4 122700039 122700171 -32929949 - B1_Mus2 SINE Alu -1 146 1 5 1521 546 43 0 0 chr4 122700176 122700245 -32929875 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 5 1521 833 213 12 78 chr4 122700245 122700446 -32929674 - B3 SINE B2 -1 197 9 5 1521 714 256 126 15 chr4 122700453 122700659 -32929461 - B4A SINE B4 -62 230 2 5 1521 943 83 15 15 chr4 122700660 122700795 -32929325 + B2_Mm2 SINE B2 39 173 -22 5 1521 294 29 0 0 chr4 122700800 122700835 -32929285 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1521 233 191 0 0 chr4 122700986 122701028 -32929092 + CT-rich Low_complexity Low_complexity 3 44 0 5 1521 2000 190 74 5 chr4 122701116 122701397 -32928723 + MTD LTR MaLR 1 303 -116 5 1521 3488 28 2 0 chr4 122701397 122701792 -32928328 - MTA_Mm LTR MaLR 0 396 1 5 1521 2000 190 74 5 chr4 122701792 122701902 -32928218 + MTD LTR MaLR 304 418 -1 5 1521 1679 26 0 5 chr4 122701961 122702155 -32927965 - B2_Mm1a SINE B2 0 193 1 5 1521 298 210 86 0 chr4 122702161 122702242 -32927878 - YREP_Mm Unknown Unknown -1468 344 257 5 1521 377 165 57 8 chr4 122702189 122702268 -32927852 + B1F SINE Alu 10 87 -62 5 1521 286 331 17 29 chr4 122702587 122702714 -32927406 - MIRm SINE MIR -99 169 46 5 1521 354 169 0 0 chr4 122703409 122703474 -32926646 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1521 679 209 66 2 chr4 122703634 122703827 -32926293 + B3 SINE B2 1 212 -4 5 1521 473 285 107 8 chr4 122704601 122704732 -32925388 - RSINE1 SINE B4 -2 163 20 6 1521 549 232 9 0 chr4 122704737 122704849 -32925271 - PB1D10 SINE Alu 0 117 5 6 1521 725 286 123 3 chr4 122705128 122705454 -32924666 + L1MD3 LINE L1 7577 7941 -54 6 1521 26 0 0 0 chr4 122705505 122705531 -32924589 + AT_rich Low_complexity Low_complexity 1 26 0 6 1521 1002 235 5 18 chr4 122705609 122705826 -32924294 + ID_B1 SINE B4 3 216 -8 6 1521 195 42 0 0 chr4 122705826 122705850 -32924270 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 6 1521 22 0 0 0 chr4 122705886 122705908 -32924212 + AT_rich Low_complexity Low_complexity 1 22 0 6 1521 355 227 13 13 chr4 122706079 122706155 -32923965 - PB1D10 SINE Alu -39 78 3 6 1521 262 250 82 14 chr4 122706296 122706369 -32923751 - RSINE1 SINE B4 -2 163 86 6 1521 465 248 92 0 chr4 122706499 122706608 -32923512 - RSINE1 SINE B4 -44 121 3 6 1521 312 261 39 93 chr4 122706783 122706869 -32923251 - L1MB5 LINE L1 0 6174 6114 6 1521 1166 68 0 20 chr4 122706869 122707019 -32923101 + B1_Mus2 SINE Alu 1 147 0 6 1521 312 261 39 93 chr4 122707019 122707139 -32922981 - L1MB5 LINE L1 -61 6113 6003 6 1521 624 243 82 4 chr4 122707207 122707421 -32922699 - L1MB5 LINE L1 -465 5703 5478 6 1521 574 204 49 83 chr4 122707439 122707583 -32922537 + B1_Mus2 SINE Alu 1 139 -8 6 1521 248 236 0 35 chr4 122707820 122707877 -32922243 - ID4 SINE ID -22 61 7 6 1521 984 48 0 0 chr4 122708089 122708215 -32921905 - B1_Mus1 SINE Alu -21 127 2 6 1521 263 242 6 69 chr4 122708215 122708268 -32921852 - ORR1B1-int LTR MaLR -862 647 605 6 1521 263 237 192 20 chr4 122708289 122708388 -32921732 + MIR3 SINE MIR 43 158 -50 6 1521 607 191 111 0 chr4 122708576 122708702 -32921418 - B1_Mur2 SINE Alu -1 148 9 6 1521 547 154 11 21 chr4 122709147 122709240 -32920880 + RSINE1 SINE B4 36 127 -38 6 1521 596 219 69 78 chr4 122709382 122709600 -32920520 - MIR SINE MIR -12 250 35 6 1521 187 114 22 22 chr4 122709960 122710005 -32920115 + T-rich Low_complexity Low_complexity 2 46 0 6 1521 237 224 115 49 chr4 122710009 122710070 -32920050 - ID4 SINE ID -18 65 1 6 1521 807 241 64 5 chr4 122710141 122710345 -32919775 - B3 SINE B2 0 216 1 6 1521 736 183 55 8 chr4 122710590 122710738 -32919382 + ID_B1 SINE B4 84 237 -55 6 1521 333 247 127 40 chr4 122710738 122710756 -32919364 - YREP_Mm Unknown Unknown -1492 276 133 6 1521 265 250 18 18 chr4 122710758 122710815 -32919305 + tRNA-Ala-GCA tRNA tRNA 8 64 -11 6 1521 441 220 8 113 chr4 122710877 122711010 -32919110 - PB1D9 SINE Alu -1 119 1 6 1521 587 257 40 27 chr4 122711051 122711199 -32918921 - RSINE1 SINE B4 0 165 16 6 1521 439 275 148 84 chr4 122711222 122711532 -32918588 - L1MB3 LINE L1 -70 6113 5784 6 1521 867 240 71 0 chr4 122711665 122711861 -32918259 - B3 SINE B2 -6 210 1 6 1521 661 208 92 0 chr4 122712667 122712797 -32917323 - B1_Mur1 SINE Alu -7 142 1 6 1521 383 283 26 0 chr4 122712800 122712913 -32917207 - PB1D10 SINE Alu 0 117 2 6 1521 3168 23 10 0 chr4 122713342 122713727 -32916393 - MTA_Mm LTR MaLR -7 389 1 6 1521 215 255 0 38 chr4 122714301 122714354 -32915766 - ID2 SINE ID -1 82 32 6 1521 613 221 69 0 chr4 122714398 122714529 -32915591 + B1F2 SINE Alu 1 140 -9 6 1521 752 233 35 50 chr4 122714529 122714728 -32915392 - ID_B1 SINE B4 0 224 29 6 1521 207 175 0 0 chr4 122714740 122714780 -32915340 + G-rich Low_complexity Low_complexity 1 40 0 6 1521 390 131 0 47 chr4 122714781 122714845 -32915275 - RSINE1 SINE B4 -87 78 18 6 1521 240 35 0 0 chr4 122714879 122714908 -32915212 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1521 412 284 73 0 chr4 122715162 122715271 -32914849 - PB1D10 SINE Alu 0 117 1 6 1521 212 314 13 103 chr4 122715210 122715288 -32914832 - B4 SINE B4 -145 147 77 6 1521 194 297 60 51 chr4 122715730 122715847 -32914273 - MIR SINE MIR -130 132 15 6 1521 398 256 11 0 chr4 122716901 122716991 -32913129 + MER5A1 DNA MER1_type 47 137 -29 6 1521 940 154 206 0 chr4 122717206 122717381 -32912739 - B3 SINE B2 -4 212 2 6 1521 335 277 11 11 chr4 122717382 122717477 -32912643 - B4A SINE B4 -195 97 3 6 1521 269 306 59 30 chr4 122717759 122717860 -32912260 + PB1D7 SINE Alu 15 118 -2 6 1521 315 215 0 71 chr4 122717863 122717948 -32912172 + ID4 SINE ID 5 83 0 6 1521 482 305 8 22 chr4 122718014 122718148 -32911972 + RSINE1 SINE B4 3 134 -31 6 1521 330 216 0 0 chr4 122718197 122718271 -32911849 + (CATA)n Simple_repeat Simple_repeat 2 75 0 6 1521 696 175 0 60 chr4 122718312 122718446 -32911674 + B1_Mus1 SINE Alu 23 148 0 6 1521 800 219 55 0 chr4 122718500 122718683 -32911437 + ID_B1 SINE B4 24 216 -8 6 1521 330 274 181 56 chr4 122718711 122718943 -32911177 + L1ME3B LINE L1 5634 5894 -346 6 1521 230 204 244 22 chr4 122718985 122719075 -32911045 + ID_B1 SINE B4 81 190 -34 6 1521 222 229 233 35 chr4 122718999 122719085 -32911035 + PB1D10 SINE Alu 12 114 -3 6 1521 266 267 114 0 chr4 122719194 122719325 -32910795 + L1M5 LINE L1 5346 5491 -633 6 1521 272 179 69 35 chr4 122719334 122719392 -32910728 + MIRc SINE MIR 165 224 -44 6 1521 276 222 0 0 chr4 122719643 122719697 -32910423 - RSINE1 SINE B4 -110 55 2 6 1521 463 248 92 8 chr4 122719703 122719833 -32910287 - B1F1 SINE Alu -6 143 3 6 1521 352 276 78 88 chr4 122720094 122720305 -32909815 - MIRb SINE MIR -19 249 27 6 1521 1144 197 35 0 chr4 122720481 122720679 -32909441 - B3 SINE B2 -11 205 1 6 1521 198 103 0 0 chr4 122720684 122720713 -32909407 + (CAGC)n Simple_repeat Simple_repeat 1 29 0 6 1521 237 83 0 0 chr4 122720715 122720751 -32909369 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 6 1521 233 297 130 65 chr4 122722772 122722880 -32907240 - ID_B1 SINE B4 0 224 110 6 1521 396 0 0 0 chr4 122723004 122723048 -32907072 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1521 796 114 137 0 chr4 122723100 122723231 -32906889 - B1_Mur4 SINE Alu -1 149 1 6 1521 1370 55 33 6 chr4 122724786 122724967 -32905153 - B2_Mm2 SINE B2 -2 193 8 6 1521 276 302 0 34 chr4 122724889 122724978 -32905142 - RSINE1 SINE B4 -79 86 1 6 1521 278 300 48 29 chr4 122724989 122725092 -32905028 + MIR SINE MIR 94 198 -64 6 1521 236 361 0 0 chr4 122725106 122725178 -32904942 + ID4 SINE ID 1 72 -11 6 1521 676 174 17 0 chr4 122725597 122725712 -32904408 + PB1D9 SINE Alu 3 119 -1 6 1521 909 144 0 21 chr4 122727255 122727397 -32902723 - B1_Mur3 SINE Alu -8 141 3 6 1521 454 297 0 52 chr4 122728759 122728894 -32901226 + ID_B1 SINE B4 81 208 -16 6 1521 498 220 22 0 chr4 122730825 122730916 -32899204 + RSINE1 SINE B4 15 107 -58 6 1521 296 235 106 0 chr4 122731132 122731217 -32898903 + PB1D10 SINE Alu 15 108 -9 6 1521 1138 56 0 0 chr4 122732246 122732388 -32897732 - B1_Mus1 SINE Alu -1 147 6 6 1521 521 219 39 122 chr4 122732248 122732404 -32897716 - B4 SINE B4 -69 223 81 6 1521 746 172 3 58 chr4 122732526 122732682 -32897438 + B1_Mus2 SINE Alu 1 147 0 6 1521 272 333 0 0 chr4 122732711 122732783 -32897337 + PB1D10 SINE Alu 27 98 -19 6 1521 333 262 38 28 chr4 122732816 122732922 -32897198 + B4 SINE B4 22 128 -164 6 1521 216 261 137 122 chr4 122732941 122732960 -32897160 - ID_B1 SINE B4 -88 136 7 6 1521 601 171 9 37 chr4 122732960 122733069 -32897051 - B3 SINE B2 -102 114 9 6 1521 255 291 56 37 chr4 122733079 122733186 -32896934 + B4 SINE B4 104 212 -80 6 1521 414 232 21 120 chr4 122733265 122733407 -32896713 + B4A SINE B4 115 242 -50 6 1521 258 324 63 86 chr4 122733423 122733664 -32896456 + RSINE1 SINE B4 70 292 0 6 1521 318 26 0 0 chr4 122733711 122733750 -32896370 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1521 214 205 179 12 chr4 122734462 122734546 -32895574 - MIRm SINE MIR -113 163 66 6 1521 1129 105 70 6 chr4 122734553 122734725 -32895395 - RLTR15 LTR ERVK 0 359 177 6 1521 181 226 194 0 chr4 122734731 122734793 -32895327 - MIR SINE MIR -8 254 181 6 1521 1012 80 73 0 chr4 122734841 122734978 -32895142 - B1_Mm SINE Alu 0 147 1 6 1521 503 244 78 0 chr4 122735081 122735196 -32894924 - B1_Mus1 SINE Alu -6 142 19 6 1521 666 254 29 0 chr4 122735556 122735694 -32894426 - B3A SINE B2 -22 176 35 6 1521 1590 42 5 0 chr4 122735698 122735888 -32894232 + B2_Mm1t SINE B2 2 192 -1 6 1521 33 0 0 0 chr4 122735963 122735996 -32894124 + AT_rich Low_complexity Low_complexity 1 33 0 6 1521 1556 22 43 0 chr4 122736005 122736189 -32893931 - B2_Mm1t SINE B2 0 193 2 6 1521 1256 47 129 0 chr4 122736197 122736368 -32893752 - B2_Mm1t SINE B2 0 193 1 6 1521 673 139 189 0 chr4 122736404 122736526 -32893594 - B1_Mus1 SINE Alu -3 145 1 6 1521 443 256 158 110 chr4 122737151 122737524 -32892596 - MLT1J LTR MaLR -2 510 120 6 1521 881 132 0 23 chr4 122737631 122737802 -32892318 + CT-rich Low_complexity Low_complexity 2 168 0 6 1521 509 261 102 59 chr4 122738506 122738672 -32891448 + B3A SINE B2 2 169 -29 6 1521 522 0 0 0 chr4 122738672 122738730 -32891390 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1521 509 261 102 59 chr4 122738730 122738750 -32891370 + B3A SINE B2 170 196 -2 6 1521 308 246 118 71 chr4 122738840 122738967 -32891153 - MIR SINE MIR -6 256 124 6 1521 220 225 195 62 chr4 122739161 122739289 -32890831 - MIRb SINE MIR -8 260 116 6 1521 261 0 0 0 chr4 122739497 122739526 -32890594 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1521 231 165 235 10 chr4 122739557 122739655 -32890465 - L1MA9 LINE L1 0 6312 6193 7 1521 3170 51 12 15 chr4 122739655 122740056 -32890064 + MTB LTR MaLR 1 400 0 7 1521 227 302 31 16 chr4 122740079 122740143 -32889977 - MIR SINE MIR -195 67 3 6 1521 324 300 5 33 chr4 122740343 122740443 -32889677 + PB1D7 SINE Alu 7 108 -41 7 1521 440 151 23 0 chr4 122740702 122740788 -32889332 + L1MB2 LINE L1 5488 5575 -608 7 1521 651 238 143 0 chr4 122740801 122740990 -32889130 + B3 SINE B2 1 216 0 7 1521 799 284 90 8 chr4 122741018 122741263 -32888857 + B4A SINE B4 2 266 -26 7 1521 921 283 112 50 chr4 122741321 122741819 -32888301 + L1MB2 LINE L1 5606 6134 -37 7 1521 1004 188 0 120 chr4 122741856 122741940 -32888180 - B3 SINE B2 -3 213 143 7 1521 1207 28 21 0 chr4 122741940 122742083 -32888037 + B1_Mus2 SINE Alu 1 146 -1 7 1521 1004 188 0 120 chr4 122742083 122742240 -32887880 - B3 SINE B2 -74 142 1 7 1521 289 283 191 1 chr4 122742264 122742353 -32887767 + PB1D10 SINE Alu 1 106 -43 7 1521 436 261 69 48 chr4 122743522 122743667 -32886453 + B1F1 SINE Alu 1 148 -1 7 1521 294 221 74 49 chr4 122743682 122743763 -32886357 + BC1_Mm scRNA scRNA 6 88 -64 7 1521 245 254 16 16 chr4 122743868 122743932 -32886188 + CT-rich Low_complexity Low_complexity 5 68 0 7 1521 215 222 18 36 chr4 122743975 122744031 -32886089 - PB1 SINE Alu -47 80 26 7 1521 765 213 14 0 chr4 122744344 122744485 -32885635 - B1_Mur2 SINE Alu -5 144 2 7 1521 231 36 0 0 chr4 122744488 122744516 -32885604 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1521 700 232 35 0 chr4 122744526 122744668 -32885452 - RSINE1 SINE B4 -17 148 2 7 1521 324 0 0 0 chr4 122744891 122744927 -32885193 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1521 261 287 91 50 chr4 122745103 122745202 -32884918 - L2c LINE L2 -2 3385 3283 7 1521 195 298 167 0 chr4 122745279 122745363 -32884757 - L2c LINE L2 -207 3180 3083 7 1521 215 319 63 68 chr4 122745656 122745861 -32884259 - L2c LINE L2 -1057 2362 2159 7 1521 182 267 50 0 chr4 122745982 122746042 -32884078 + L3 LINE CR1 909 971 -3518 7 1521 280 253 113 21 chr4 122746174 122746271 -32883849 + MER81 DNA AcHobo 8 113 -1 7 1521 1392 90 16 0 chr4 122746694 122746882 -32883238 + B2_Mm2 SINE B2 1 191 -4 7 1521 256 319 138 58 chr4 122747150 122747526 -32882594 - L2a LINE L2 -24 3402 2997 7 1521 766 180 37 2 chr4 122747535 122747718 -32882402 + B3 SINE B2 1 198 0 7 1521 761 121 8 0 chr4 122747726 122747850 -32882270 + (GGAA)n Simple_repeat Simple_repeat 3 127 0 7 1521 258 32 0 0 chr4 122747990 122748021 -32882099 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 7 1521 265 243 57 0 chr4 122748067 122748137 -32881983 + B1F SINE Alu 1 74 -75 7 1521 550 174 71 56 chr4 122748178 122748301 -32881819 + B1_Mur1 SINE Alu 7 142 -7 7 1521 534 193 15 15 chr4 122748328 122748465 -32881655 + GA-rich Low_complexity Low_complexity 4 140 0 7 1521 364 195 118 35 chr4 122748547 122748632 -32881488 + PB1D7 SINE Alu 13 104 -16 7 1521 507 60 0 0 chr4 122748634 122748701 -32881419 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1521 387 0 0 0 chr4 122749238 122749281 -32880839 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1521 324 0 0 0 chr4 122749281 122749316 -32880804 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1521 462 69 0 0 chr4 122749425 122749483 -32880637 + (TCC)n Simple_repeat Simple_repeat 2 59 0 7 1521 642 60 0 0 chr4 122749483 122749566 -32880554 + (TC)n Simple_repeat Simple_repeat 1 83 0 7 1521 722 204 14 14 chr4 122749580 122749724 -32880396 - B1_Mur2 SINE Alu -5 144 1 7 1521 819 43 0 25 chr4 122749802 122749921 -32880199 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 7 1521 230 0 33 0 chr4 122749923 122749953 -32880167 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 7 1521 1175 68 7 0 chr4 122749954 122750101 -32880019 - B1_Mus1 SINE Alu 0 148 1 7 1521 760 98 16 8 chr4 122750101 122750225 -32879895 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 7 1521 709 206 132 41 chr4 122750225 122750278 -32879842 - B3 SINE B2 -1 215 166 7 1521 387 0 0 0 chr4 122750278 122750321 -32879799 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1521 709 206 132 41 chr4 122750321 122750464 -32879656 - B3 SINE B2 -51 165 1 7 1521 280 291 0 0 chr4 122750706 122750785 -32879335 - ID_B1 SINE B4 -2 222 144 7 1521 544 184 19 10 chr4 122750789 122750893 -32879227 - ID_B1 SINE B4 -27 197 93 7 1521 369 295 41 8 chr4 122750893 122750904 -32879216 - B1F SINE Alu -22 82 1 7 1521 358 290 0 10 chr4 122750989 122751090 -32879030 + B1F SINE Alu 4 103 -46 7 1521 1857 216 56 36 chr4 122751251 122751839 -32878281 + RLTR26 LTR ERVK 5 638 -4 7 1521 234 0 0 0 chr4 122752417 122752443 -32877677 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1521 1212 77 77 0 chr4 122752443 122752611 -32877509 - B2_Mm1t SINE B2 -12 181 1 7 1521 584 232 84 19 chr4 122752651 122752805 -32877315 - RSINE1 SINE B4 0 165 2 7 1521 419 154 233 25 chr4 122752923 122753043 -32877077 + B1_Mur2 SINE Alu 1 145 -4 7 1521 622 267 81 19 chr4 122753250 122753460 -32876660 - MLT1D LTR MaLR -261 244 22 7 1521 345 171 34 40 chr4 122753631 122753808 -32876312 + (GGGTG)n Simple_repeat Simple_repeat 3 178 0 7 1521 318 291 109 51 chr4 122754043 122754199 -32875921 + MIR SINE MIR 25 189 -73 7 1521 346 155 46 102 chr4 122754493 122754601 -32875519 + LTR81A LTR ERV1? 1 102 -1248 7 1521 288 313 0 0 chr4 122754618 122754701 -32875419 + ID4_ SINE ID 1 83 0 7 1521 360 0 0 0 chr4 122754703 122754743 -32875377 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1521 1243 142 39 19 chr4 122754747 122754955 -32875165 - B3 SINE B2 0 216 5 7 1521 933 157 0 13 chr4 122755014 122755163 -32874957 + B1_Mur4 SINE Alu 1 147 -3 7 1521 243 0 0 0 chr4 122755170 122755197 -32874923 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1521 494 251 41 69 chr4 122755505 122755723 -32874397 + B3 SINE B2 5 216 0 7 1521 998 260 62 11 chr4 122755757 122756029 -32874091 + B4 SINE B4 1 286 -6 7 1521 1200 93 0 0 chr4 122756037 122756209 -32873911 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 1521 321 250 0 50 chr4 122756890 122756991 -32873129 - MLT1A1 LTR MaLR 0 408 313 7 1521 1084 63 0 7 chr4 122757179 122757322 -32872798 - B2_Mm2 SINE B2 -51 144 3 7 1521 297 0 0 0 chr4 122757322 122757355 -32872765 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1521 510 215 56 0 chr4 122757589 122757696 -32872424 + RSINE1 SINE B4 17 129 -36 7 1521 185 338 36 36 chr4 122757803 122757886 -32872234 - MIR SINE MIR -124 138 56 7 1521 618 14 0 0 chr4 122757935 122758006 -32872114 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1521 235 325 11 0 chr4 122760079 122760181 -32869939 + MIR SINE MIR 51 156 -112 7 1521 225 0 0 0 chr4 122760181 122760206 -32869914 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1521 216 0 0 0 chr4 122760428 122760452 -32869668 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 7 1521 1187 41 14 0 chr4 122760452 122760598 -32869522 - B1_Mus1 SINE Alu 0 148 1 7 1521 354 125 0 18 chr4 122761016 122761073 -32869047 - HAL1-3A_ME LINE L1 -827 2031 1976 7 1521 714 206 7 0 chr4 122761093 122761399 -32868721 + (TG)n Simple_repeat Simple_repeat 1 308 0 7 1521 25 51 0 0 chr4 122761578 122761617 -32868503 + AT_rich Low_complexity Low_complexity 1 39 0 7 1521 747 261 125 98 chr4 122761715 122762139 -32867981 + RLTR18B LTR ERVK 108 556 -60 7 1521 584 133 9 75 chr4 122762126 122762232 -32867888 - B1_Mur4 SINE Alu -15 135 37 7 1521 252 288 40 14 chr4 122762321 122762395 -32867725 - RSINE1 SINE B4 -4 161 86 7 1521 887 128 53 0 chr4 122762419 122762552 -32867568 - B1_Mus1 SINE Alu -6 142 3 7 1521 263 164 0 0 chr4 122762645 122762769 -32867351 + T-rich Low_complexity Low_complexity 1 124 0 7 1521 241 289 0 0 chr4 122762792 122762844 -32867276 - B1F SINE Alu -89 60 9 7 1521 243 255 0 18 chr4 122763012 122763068 -32867052 + B4A SINE B4 88 142 -150 7 1521 813 142 0 180 chr4 122763018 122763190 -32866930 + B1_Mur3 SINE Alu 9 149 0 7 1521 517 261 78 0 chr4 122763222 122763364 -32866756 - RSINE1 SINE B4 -11 154 2 7 1521 369 147 191 0 chr4 122763435 122763503 -32866617 + PB1D9 SINE Alu 30 110 -10 7 1521 491 258 206 0 chr4 122763515 122763722 -32866398 - L1M2 LINE L1 -2509 3634 3386 7 1521 1016 134 62 0 chr4 122763769 122763948 -32866172 - B2_Mm2 SINE B2 -4 191 2 7 1521 229 257 161 32 chr4 122763948 122764197 -32865923 - L1M2 LINE L1 -2916 3224 2944 7 1521 204 179 0 0 chr4 122764258 122764297 -32865823 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 7 1521 219 69 0 0 chr4 122764297 122764326 -32865794 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1521 513 214 78 0 chr4 122764345 122764448 -32865672 - B1_Mur3 SINE Alu -38 111 1 7 1521 974 140 27 27 chr4 122764459 122764642 -32865478 - B2_Mm2 SINE B2 -10 185 3 7 1521 285 264 35 26 chr4 122764769 122764882 -32865238 - L1M2 LINE L1 -3318 2825 2712 7 1521 931 188 99 0 chr4 122765044 122765225 -32864895 - URR1B DNA MER1_type -9 216 18 7 1521 900 176 59 0 chr4 122765291 122765461 -32864659 - B2_Mm2 SINE B2 -15 180 1 7 1521 904 260 20 5 chr4 122765499 122765700 -32864420 + B3 SINE B2 13 216 0 7 1521 549 187 122 0 chr4 122765731 122765838 -32864282 + PB1D9 SINE Alu 1 120 0 7 1521 210 71 0 0 chr4 122766577 122766605 -32863515 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1521 450 0 0 0 chr4 122766623 122766673 -32863447 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1521 206 136 23 0 chr4 122767112 122767156 -32862964 + GA-rich Low_complexity Low_complexity 3 47 0 7 1521 221 240 13 0 chr4 122767453 122767528 -32862592 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 1521 234 0 0 0 chr4 122768740 122768766 -32861354 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1521 1237 41 7 0 chr4 122768777 122768923 -32861197 + B1_Mus2 SINE Alu 1 147 0 8 1521 317 265 198 30 chr4 122769019 122769120 -32861000 - ID_B1 SINE B4 -4 220 103 8 1521 961 123 20 33 chr4 122769133 122769284 -32860836 - B1_Mur4 SINE Alu 0 150 2 8 1521 392 316 117 44 chr4 122769284 122769420 -32860700 - L1M5 LINE L1 -3659 2487 2352 8 1521 954 206 50 5 chr4 122769420 122769620 -32860500 + B3 SINE B2 2 210 -6 8 1521 392 316 117 44 chr4 122769620 122769681 -32860439 - L1M5 LINE L1 -3795 2351 2274 8 1521 307 311 44 0 chr4 122770559 122770649 -32859471 + HERVL40-int LTR ERVL 5080 5173 -357 8 1521 373 261 0 67 chr4 122770705 122770824 -32859296 + PB1D10 SINE Alu 2 112 -5 8 1521 191 136 14 70 chr4 122771042 122771113 -32859007 + C-rich Low_complexity Low_complexity 6 72 0 8 1521 222 265 206 0 chr4 122771144 122771212 -32858908 + PB1D10 SINE Alu 30 111 -6 8 1521 476 308 92 33 chr4 122771437 122771827 -32858293 - L1_Mur3 LINE L1 -2474 3406 2994 8 1521 525 71 0 0 chr4 122771872 122771942 -32858178 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1521 198 0 0 0 chr4 122771971 122771993 -32858127 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1521 550 221 72 51 chr4 122772008 122772035 -32858085 - B1_Mur2 SINE Alu 0 149 118 8 1521 764 110 16 48 chr4 122772035 122772159 -32857961 - PB1D9 SINE Alu 0 120 1 8 1521 550 221 72 51 chr4 122772159 122772269 -32857851 - B1_Mur2 SINE Alu -32 117 9 8 1521 329 269 64 11 chr4 122772186 122772280 -32857840 - B4 SINE B4 -111 181 83 8 1521 808 239 78 73 chr4 122772326 122772767 -32857353 + L1MA4 LINE L1 5359 5931 -369 8 1521 1327 106 26 5 chr4 122772853 122773042 -32857078 + B2_Mm2 SINE B2 1 193 -2 8 1521 600 181 169 23 chr4 122773470 122773600 -32856520 + B1_Mur4 SINE Alu 2 150 0 8 1521 383 283 53 9 chr4 122773718 122773832 -32856288 + RSINE1 SINE B4 2 120 -45 8 1521 2153 136 20 14 chr4 122773832 122773896 -32856224 + RLTR15 LTR ERVK 1 66 -293 8 1521 744 113 324 21 chr4 122773896 122774041 -32856079 + B2_Mm2 SINE B2 1 189 -6 8 1521 2153 136 20 14 chr4 122774041 122774333 -32855787 + RLTR15 LTR ERVK 67 358 -1 8 1521 447 19 0 0 chr4 122774363 122774415 -32855705 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1521 443 185 34 85 chr4 122774482 122774600 -32855520 - PB1D7 SINE Alu -6 114 3 8 1521 317 274 112 56 chr4 122774600 122774615 -32855505 - B4A SINE B4 -61 178 81 8 1521 362 286 7 28 chr4 122774652 122774769 -32855351 - B1F SINE Alu 0 149 3 8 1521 605 257 0 75 chr4 122774862 122774902 -32855218 - B1_Mur3 SINE Alu 0 149 121 8 1521 342 0 0 0 chr4 122774902 122774940 -32855180 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 1521 636 244 0 0 chr4 122774940 122775059 -32855061 - B1_Mur2 SINE Alu -29 120 2 8 1521 293 257 26 122 chr4 122774956 122775071 -32855049 - MT2B LTR ERVL -344 257 154 8 1521 261 0 0 0 chr4 122775556 122775585 -32854535 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 8 1521 266 190 138 0 chr4 122775803 122775861 -32854259 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 8 1521 359 254 71 26 chr4 122775915 122776028 -32854092 - PB1D7 SINE Alu -2 118 1 8 1521 1324 80 26 11 chr4 122776141 122776330 -32853790 - B2_Mm2 SINE B2 -2 193 2 8 1521 314 330 8 51 chr4 122776337 122776455 -32853665 - PB1D10 SINE Alu -4 113 1 8 1521 444 281 17 26 chr4 122776353 122776470 -32853650 - ID_B1 SINE B4 -43 181 66 8 1521 190 303 38 38 chr4 122777073 122777152 -32852968 - L2a LINE L2 -388 3031 2953 8 1521 443 208 2 25 chr4 122777317 122777421 -32852699 + PB1D9 SINE Alu 19 119 -1 8 1521 213 39 0 0 chr4 122777694 122777720 -32852400 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1521 308 24 24 0 chr4 122777720 122777760 -32852360 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1521 622 274 65 76 chr4 122777780 122778056 -32852064 - B4 SINE B4 -18 274 2 8 1521 6946 67 24 24 chr4 122778089 122779018 -32851102 - RLTR13B3 LTR ERVK 0 929 1 8 1521 318 331 77 69 chr4 122779553 122779813 -32850307 + L1M5 LINE L1 5582 5843 -281 8 1521 1234 54 0 0 chr4 122779828 122779975 -32850145 - B1_Mm SINE Alu 0 147 1 8 1521 5140 130 62 45 chr4 122779975 122780844 -32849276 - RMER19B LTR ERVK -17 885 1 8 1521 300 316 0 0 chr4 122780934 122781010 -32849110 + ID4 SINE ID 3 78 -5 8 1521 360 0 0 0 chr4 122781014 122781054 -32849066 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1521 423 0 0 0 chr4 122781054 122781101 -32849019 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1521 1475 61 0 6 chr4 122781340 122781522 -32848598 + B2_Mm2 SINE B2 1 181 -14 8 1521 263 85 0 21 chr4 122784027 122784075 -32846045 + (TGGGGG)n Simple_repeat Simple_repeat 5 51 0 8 1521 615 230 0 0 chr4 122784625 122784738 -32845382 + PB1D7 SINE Alu 5 117 -3 8 1521 770 110 16 25 chr4 122785067 122785188 -32844932 + PB1D9 SINE Alu 1 120 0 8 1521 284 64 21 0 chr4 122785189 122785236 -32844884 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1521 219 146 0 0 chr4 122785672 122785713 -32844407 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 8 1521 285 290 80 80 chr4 122785716 122785866 -32844254 - L2a LINE L2 0 3426 3277 8 1521 351 65 0 0 chr4 122785892 122785938 -32844182 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1521 209 310 103 26 chr4 122785976 122786126 -32843994 + MIRm SINE MIR 35 200 -68 8 1521 197 188 41 20 chr4 122786193 122786242 -32843878 - MIRc SINE MIR -135 133 84 8 1521 21 0 0 0 chr4 122786514 122786535 -32843585 + AT_rich Low_complexity Low_complexity 1 21 0 8 1521 336 287 65 32 chr4 122786681 122786836 -32843284 - B4 SINE B4 -131 161 2 8 1521 323 304 15 60 chr4 122786836 122786969 -32843151 - L1M5 LINE L1 -339 5825 5699 8 1521 249 268 50 20 chr4 122786970 122787069 -32843051 + PB1D9 SINE Alu 3 104 -16 8 1521 621 72 0 0 chr4 122787106 122787189 -32842931 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 8 1521 1220 0 0 7 chr4 122787256 122787397 -32842723 + (TTC)n Simple_repeat Simple_repeat 2 141 0 8 1521 3172 67 2 19 chr4 122787407 122787821 -32842299 - L1_Mus1 LINE L1 -1 6566 6160 8 1521 854 55 55 0 chr4 122787915 122788025 -32842095 - B1_Mus1 SINE Alu -7 141 26 8 1521 223 173 115 0 chr4 122788533 122788585 -32841535 + MIRm SINE MIR 89 146 -130 8 1521 1700 180 32 22 chr4 122789505 122789818 -32840302 - MTD LTR MaLR -103 316 1 8 1521 639 176 80 7 chr4 122790221 122790358 -32839762 - B1_Mur2 SINE Alu 0 149 3 8 1521 243 0 0 0 chr4 122790424 122790451 -32839669 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 8 1521 550 210 76 111 chr4 122790588 122790786 -32839334 + MT2B LTR ERVL 74 264 -337 8 1521 1006 56 0 0 chr4 122790686 122790811 -32839309 + B1_Mus2 SINE Alu 13 137 -10 8 1521 257 96 0 55 chr4 122790838 122790893 -32839227 + A-rich Low_complexity Low_complexity 2 53 0 8 1521 184 173 111 37 chr4 122791468 122791522 -32838598 - L4 LINE RTE -1581 448 391 8 1521 1066 112 12 0 chr4 122795896 122796392 -32833728 + (TG)n Simple_repeat Simple_repeat 1 502 0 8 1521 263 283 0 75 chr4 122797513 122797533 -32832587 - BC1_Mm scRNA scRNA -40 112 95 8 1521 341 268 0 0 chr4 122797533 122797604 -32832516 - ID2 SINE ID -10 73 3 8 1521 278 284 0 72 chr4 122797604 122797694 -32832426 - ID4_ SINE ID -58 94 10 8 1521 235 328 0 0 chr4 122798108 122798166 -32831954 - Lx8 LINE L1 -170 7303 7246 8 1521 769 155 139 30 chr4 122800845 122801011 -32829109 + URR1A DNA MER1_type 1 184 -42 8 1521 476 207 126 0 chr4 122802238 122802325 -32827795 + PB1D10 SINE Alu 1 98 -19 8 1521 621 0 0 0 chr4 122802332 122802401 -32827719 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 8 1521 478 220 278 31 chr4 122803106 122803363 -32826757 + MTC LTR MaLR 1 397 -24 8 1521 302 153 247 0 chr4 122803664 122803749 -32826371 + MLT2D LTR ERVL 67 172 -242 8 1521 289 344 8 31 chr4 122803811 122803940 -32826180 - Cheshire DNA MER1_type -2129 291 166 8 1521 452 296 47 20 chr4 122805322 122805470 -32824650 + RSINE1 SINE B4 3 154 -11 8 1521 406 96 0 0 chr4 122805771 122805823 -32824297 - B3A SINE B2 -142 56 5 8 1521 284 309 134 0 chr4 122805887 122805984 -32824136 + PB1D10 SINE Alu 1 110 -7 8 1521 839 185 14 14 chr4 122805987 122806135 -32823985 + B1_Mur1 SINE Alu 1 148 -1 8 1521 248 333 62 0 chr4 122806176 122806257 -32823863 + MER20B DNA MER1_type 392 477 -306 8 1521 646 72 57 14 chr4 122806537 122806678 -32823442 + (CAGAGA)n Simple_repeat Simple_repeat 4 150 0 8 1521 1275 27 0 0 chr4 122806795 122806942 -32823178 + B1_Mus2 SINE Alu 1 147 0 8 1521 462 280 69 13 chr4 122808297 122808456 -32821664 - MER2 DNA MER2_type -122 223 56 8 1521 496 314 46 0 chr4 122808480 122808633 -32821487 - RSINE1 SINE B4 -3 162 3 8 1521 648 244 85 49 chr4 122809021 122809416 -32820704 + RMER15 LTR ERVL 28 557 -18 8 1521 238 250 29 72 chr4 122809415 122809484 -32820636 + RSINE1 SINE B4 100 165 0 8 1521 705 108 35 18 chr4 122809500 122809613 -32820507 - B1_Mur2 SINE Alu -1 148 34 8 1521 320 327 93 51 chr4 122809666 122809785 -32820335 - B3A SINE B2 -15 201 80 8 1521 236 271 65 108 chr4 122809801 122810033 -32820087 + HAL1 LINE L1 2208 2429 -78 8 1521 24 67 0 0 chr4 122810106 122810151 -32819969 + AT_rich Low_complexity Low_complexity 1 45 0 8 1521 233 161 31 31 chr4 122811249 122811313 -32818807 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 8 1521 551 182 159 0 chr4 122812978 122813104 -32817016 + B1_Mur4 SINE Alu 3 148 -2 9 1522 696 158 8 0 chr4 122814581 122814701 -32815419 - URR1A DNA MER1_type -27 199 79 9 1522 1206 97 34 11 chr4 122815023 122815200 -32814920 + B2_Mm2 SINE B2 1 181 -14 9 1522 387 281 96 9 chr4 122815305 122815420 -32814700 + PB1 SINE Alu 3 127 0 9 1522 411 245 49 0 chr4 122815594 122815696 -32814424 - PB1D10 SINE Alu -6 111 5 9 1522 287 145 0 88 chr4 122815800 122815959 -32814161 + (TCTCTG)n Simple_repeat Simple_repeat 6 150 0 9 1522 815 261 144 24 chr4 122817364 122817662 -32812458 + MER58B DNA MER1_type 8 341 0 9 1522 683 213 86 8 chr4 122817842 122817970 -32812150 - B1_Mur2 SINE Alu -3 146 9 9 1522 429 294 116 61 chr4 122817844 122817991 -32812129 - ID_B1 SINE B4 -4 220 64 9 1522 1115 130 33 85 chr4 122817991 122818202 -32811918 + RLTR28B LTR ERVL 3 202 -279 9 1522 520 15 15 0 chr4 122818202 122818267 -32811853 - MT2C_Mm LTR ERVL 0 475 410 9 1522 1535 61 10 0 chr4 122818265 122818461 -32811659 - MT2C_Mm LTR ERVL -277 198 1 9 1522 1348 163 82 22 chr4 122818461 122818729 -32811391 + RLTR28B LTR ERVL 198 481 0 9 1522 259 270 13 39 chr4 122818730 122818807 -32811313 - ID4 SINE ID -5 78 4 9 1522 453 205 242 8 chr4 122818867 122818995 -32811125 - RSINE1 SINE B4 -6 159 2 9 1522 2294 225 29 68 chr4 122819205 122819445 -32810675 - Lx9 LINE L1 0 7644 7443 9 1522 1285 34 0 0 chr4 122819445 122819591 -32810529 - B1_Mus2 SINE Alu 0 147 2 9 1522 2294 225 29 68 chr4 122819591 122820074 -32810046 - Lx9 LINE L1 -202 7442 6949 9 1522 875 240 19 33 chr4 122820090 122820301 -32809819 - B3 SINE B2 -6 210 3 9 1522 1732 188 119 43 chr4 122820314 122820800 -32809320 - RMER4B LTR ERVK 0 585 38 9 1522 4071 46 2 0 chr4 122820800 122821274 -32808846 - MT2C_Mm LTR ERVL 0 475 1 9 1522 1732 188 134 53 chr4 122821274 122821304 -32808816 - RMER4B LTR ERVK -548 37 1 9 1522 1929 120 14 7 chr4 122821356 122821649 -32808471 + ORR1A2 LTR MaLR 33 327 0 9 1522 1267 73 85 0 chr4 122821756 122821915 -32808205 + B2_Mm1a SINE B2 1 160 -33 9 1522 423 0 0 0 chr4 122821915 122821962 -32808158 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 9 1522 1267 73 85 0 chr4 122821962 122821979 -32808141 + B2_Mm1a SINE B2 161 190 -3 9 1522 998 334 123 51 chr4 122822107 122822716 -32807404 + MER21B LTR ERV1 100 752 -111 9 1522 510 234 104 8 chr4 122822797 122822922 -32807198 + ID_B1 SINE B4 86 222 -2 9 1522 1134 90 11 6 chr4 122823350 122823529 -32806591 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1522 302 309 0 12 chr4 122823547 122823629 -32806491 - B4 SINE B4 -206 86 6 9 1522 588 206 98 8 chr4 122823642 122823774 -32806346 - B1_Mur1 SINE Alu 0 149 6 9 1522 2622 138 39 5 chr4 122823945 122824352 -32805768 + MTC LTR MaLR 1 421 0 9 1522 185 330 54 11 chr4 122824674 122824766 -32805354 + L2b LINE L2 3275 3370 -5 9 1522 406 208 28 0 chr4 122824993 122825065 -32805055 + ID4 SINE ID 1 74 -9 9 1522 446 282 130 31 chr4 122825391 122825552 -32804568 - MER5A DNA MER1_type 0 189 13 9 1522 834 210 77 34 chr4 122825674 122825714 -32804406 + B3 SINE B2 1 45 -171 9 1522 819 131 13 52 chr4 122825714 122825867 -32804253 + B1_Mur3 SINE Alu 2 148 -1 9 1522 834 210 77 34 chr4 122825867 122826033 -32804087 + B3 SINE B2 46 216 0 9 1522 485 242 91 0 chr4 122826094 122826193 -32803927 - B3 SINE B2 -108 108 1 9 1522 420 137 14 0 chr4 122826254 122826327 -32803793 - ORR1D1 LTR MaLR 0 374 301 9 1522 212 200 22 0 chr4 122826328 122826373 -32803747 - B4 SINE B4 -245 47 2 9 1522 373 192 250 37 chr4 122826432 122826540 -32803580 + RSINE1 SINE B4 13 143 -22 9 1522 1241 42 0 0 chr4 122826580 122826722 -32803398 - B1_Mus2 SINE Alu -5 142 1 9 1522 830 269 39 41 chr4 122826758 122826962 -32803158 + L1M4 LINE L1 5069 5277 -869 9 1522 3363 122 6 28 chr4 122826962 122827459 -32802661 - Lx2 LINE L1 -1 6996 6511 9 1522 830 264 53 134 chr4 122827459 122827626 -32802494 + L1M4 LINE L1 5278 5430 -754 9 1522 774 193 44 0 chr4 122827626 122827761 -32802359 + B1_Mur1 SINE Alu 2 142 -7 9 1522 830 264 53 134 chr4 122827761 122827868 -32802252 + L1M4 LINE L1 5431 5502 -682 9 1522 3272 58 2 12 chr4 122827868 122828272 -32801848 + MTB LTR MaLR 1 400 0 9 1522 830 264 53 134 chr4 122828272 122828499 -32801621 + L1M4 LINE L1 5503 5739 -445 9 1522 312 229 0 0 chr4 122828636 122828719 -32801401 + A-rich Low_complexity Low_complexity 1 83 0 9 1522 655 286 25 35 chr4 122828726 122828925 -32801195 + B4 SINE B4 2 198 -94 9 1522 186 43 0 0 chr4 122829127 122829150 -32800970 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1522 735 221 7 0 chr4 122829150 122829286 -32800834 - B1_Mur2 SINE Alu -10 139 3 9 1522 219 88 0 0 chr4 122829325 122829359 -32800761 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 9 1522 764 261 64 0 chr4 122829368 122829556 -32800564 - B3 SINE B2 -15 201 2 9 1522 219 167 0 0 chr4 122829577 122829619 -32800501 + (ATG)n Simple_repeat Simple_repeat 1 42 0 9 1522 1225 55 7 0 chr4 122829660 122829806 -32800314 + B1_Mus1 SINE Alu 2 148 0 9 1522 915 115 0 0 chr4 122829818 122829957 -32800163 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 9 1522 1378 89 11 0 chr4 122829964 122830154 -32799966 + B2_Mm1t SINE B2 2 193 0 9 1522 230 204 20 0 chr4 122830299 122830348 -32799772 - LTR65 LTR ERV1 -281 388 339 9 1522 206 356 0 11 chr4 122830652 122830740 -32799380 + (TG)n Simple_repeat Simple_repeat 1 87 0 9 1522 744 280 13 93 chr4 122830751 122830987 -32799133 - B4A SINE B4 -75 217 1 9 1522 353 314 58 14 chr4 122830999 122831138 -32798982 - L1M5 LINE L1 -2369 3777 3633 9 1522 602 247 71 71 chr4 122831447 122831630 -32798490 - B3A SINE B2 -15 183 1 9 1522 348 224 134 45 chr4 122831875 122831987 -32798133 - B4 SINE B4 -103 189 68 9 1522 815 184 0 0 chr4 122831997 122832133 -32797987 - B1_Mus1 SINE Alu -1 147 12 9 1522 287 265 23 35 chr4 122832181 122832267 -32797853 - B4 SINE B4 -206 86 2 9 1522 301 253 25 0 chr4 122832645 122832724 -32797396 + CT-rich Low_complexity Low_complexity 1 81 0 9 1522 243 318 0 33 chr4 122832880 122832971 -32797149 + MIR SINE MIR 74 161 -101 9 1522 588 251 275 30 chr4 122833055 122833475 -32796645 - LTR50 LTR ERVL -192 603 1 9 1522 188 35 35 0 chr4 122833550 122833579 -32796541 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1522 447 19 0 0 chr4 122833634 122833686 -32796434 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 9 1522 582 206 0 0 chr4 122833686 122833778 -32796342 - B1_Mur2 SINE Alu -9 140 49 9 1522 212 265 0 20 chr4 122833778 122833828 -32796292 + B3 SINE B2 87 135 -81 9 1522 1632 151 104 75 chr4 122833828 122834259 -32795861 - RMER16 LTR ERVK 0 533 1 9 1522 331 226 83 0 chr4 122834259 122834339 -32795781 + B3 SINE B2 130 216 0 9 1522 296 232 72 12 chr4 122834525 122834608 -32795512 - MTEb LTR MaLR -14 365 278 9 1522 463 255 20 0 chr4 122834723 122834821 -32795299 - B3 SINE B2 0 216 117 9 1522 356 280 11 21 chr4 122834859 122834954 -32795166 - MLT1A1 LTR MaLR -276 132 39 9 1522 2272 161 51 34 chr4 122835160 122835349 -32794771 + MTC LTR MaLR 3 210 -211 9 1522 1179 72 0 0 chr4 122835349 122835488 -32794632 + B1_Mus1 SINE Alu 3 141 -7 9 1522 1115 117 0 11 chr4 122835488 122835669 -32794451 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 1522 2272 161 51 34 chr4 122835669 122835890 -32794230 + MTC LTR MaLR 211 420 -1 9 1522 558 247 75 70 chr4 122835944 122836131 -32793989 - ID_B1 SINE B4 -14 210 23 9 1522 278 257 64 14 chr4 122836447 122836564 -32793556 - LTR41 LTR ERVL -8 760 617 9 1522 1222 68 0 0 chr4 122836705 122836851 -32793269 - B1_Mus1 SINE Alu -2 146 1 9 1522 504 257 28 14 chr4 122836894 122837036 -32793084 + B1F SINE Alu 1 144 -5 9 1522 816 219 328 0 chr4 122837058 122837314 -32792806 - ORR1D2 LTR MaLR -12 358 19 9 1522 233 296 0 0 chr4 122837944 122837998 -32792122 + MTEb LTR MaLR 1 54 -325 9 1522 283 306 33 153 chr4 122838043 122838337 -32791783 + MLT2B2 LTR ERVL 235 485 -30 9 1522 401 338 65 43 chr4 122838359 122838637 -32791483 - Lx8 LINE L1 -13 7460 7177 9 1522 2016 153 8 83 chr4 122838672 122839056 -32791064 + RLTR41 LTR ERV1 92 446 0 9 1522 560 257 132 23 chr4 122839110 122839329 -32790791 - Lx8 LINE L1 -397 7076 6834 9 1522 596 281 72 43 chr4 122839468 122839676 -32790444 + MER74A LTR ERVL 219 432 -126 9 1522 616 209 60 79 chr4 122839764 122839951 -32790169 - LTR50 LTR ERVL -355 176 2 9 1522 189 0 0 0 chr4 122840111 122840132 -32789988 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 9 1522 193 369 58 0 chr4 122840231 122840334 -32789786 - L2a LINE L2 -328 3098 2990 9 1522 757 278 94 84 chr4 122840335 122840740 -32789380 + MLT2D LTR ERVL 2 410 -4 9 1522 658 186 0 0 chr4 122840966 122841068 -32789052 - B1_Mur1 SINE Alu -9 140 39 9 1522 901 204 88 5 chr4 122841078 122841270 -32788850 - B3 SINE B2 -7 209 2 9 1522 499 296 70 7 chr4 122841890 122842033 -32788087 - RSINE1 SINE B4 -11 154 3 9 1522 533 233 26 0 chr4 122842156 122842272 -32787848 - B1_Mur2 SINE Alu -3 146 28 9 1522 583 231 66 15 chr4 122842323 122842459 -32787661 - B3 SINE B2 -5 211 69 9 1522 580 264 143 22 chr4 122842460 122842642 -32787478 - ORR1D1 LTR MaLR -2 372 169 9 1522 1231 61 0 0 chr4 122842668 122842815 -32787305 - B1_Mus1 SINE Alu -1 147 1 9 1522 216 0 0 0 chr4 122842997 122843021 -32787099 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1522 637 201 61 42 chr4 122843230 122843402 -32786718 - ORR1D1 LTR MaLR -137 222 38 9 1522 234 276 38 75 chr4 122843438 122843544 -32786576 - MLT1A LTR MaLR -214 160 59 9 1522 227 136 62 26 chr4 122843805 122843918 -32786202 + (TG)n Simple_repeat Simple_repeat 1 117 0 9 1522 356 167 53 53 chr4 122843930 122844082 -32786038 + (TG)n Simple_repeat Simple_repeat 1 152 0 9 1522 221 276 250 0 chr4 122844274 122844350 -32785770 - B1F1 SINE Alu -48 101 7 9 1522 572 186 129 23 chr4 122844395 122844527 -32785593 + B1F SINE Alu 3 148 -1 9 1522 461 297 101 15 chr4 122844527 122844725 -32785395 + B3 SINE B2 2 216 0 9 1522 24 53 0 0 chr4 122844762 122844800 -32785320 + AT_rich Low_complexity Low_complexity 1 38 0 1 1522 640 236 133 90 chr4 122844807 122845086 -32785034 + B4A SINE B4 1 291 -1 1 1522 239 325 16 16 chr4 122845343 122845468 -32784652 + L1M5 LINE L1 5637 5761 -363 1 1522 509 296 9 1 chr4 122845567 122845705 -32784415 + B4A SINE B4 93 231 -61 1 1522 888 157 0 7 chr4 122845697 122845832 -32784288 + B1_Mus1 SINE Alu 15 148 0 1 1522 667 147 9 18 chr4 122845862 122845973 -32784147 + B1_Mur2 SINE Alu 40 149 0 1 1522 1381 90 0 26 chr4 122845979 122846173 -32783947 + B2_Mm2 SINE B2 2 190 -5 1 1522 238 219 0 200 chr4 122846193 122846212 -32783908 + B4A SINE B4 223 240 -52 1 1522 2600 132 246 14 chr4 122846212 122846772 -32783348 + RMER6C LTR ERVK 1 690 0 1 1522 238 219 0 200 chr4 122846772 122846832 -32783288 + B4A SINE B4 241 286 -6 1 1522 498 264 103 14 chr4 122847000 122847146 -32782974 + RSINE1 SINE B4 1 159 -6 1 1522 407 289 115 8 chr4 122847179 122847301 -32782819 + B1F1 SINE Alu 10 144 -5 1 1522 210 182 23 0 chr4 122847469 122847513 -32782607 + CT-rich Low_complexity Low_complexity 2 46 0 1 1522 500 328 8 0 chr4 122847576 122847707 -32782413 - RSINE1 SINE B4 -9 156 25 1 1522 321 308 165 8 chr4 122847937 122847963 -32782157 - MER45A DNA Tip100 -38 140 113 1 1522 1283 86 6 11 chr4 122847963 122848139 -32781981 + B2_Mm1t SINE B2 2 176 -17 1 1522 321 308 165 8 chr4 122848139 122848233 -32781887 - MER45A DNA Tip100 -66 112 3 1 1522 229 322 67 47 chr4 122848400 122848550 -32781570 - MIR SINE MIR -2 260 108 1 1522 275 336 36 9 chr4 122849702 122849813 -32780307 + MamRep38 DNA hAT 1 114 -181 1 1522 323 204 1 69 chr4 122850319 122850400 -32779720 + MTE2b LTR MaLR 1 77 -302 1 1522 382 301 101 127 chr4 122850480 122850788 -32779332 - MTEa LTR MaLR -4 375 76 1 1522 288 77 0 0 chr4 122851144 122851183 -32778937 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1522 238 320 73 16 chr4 122851197 122851321 -32778799 + LTR33A LTR ERVL 368 498 -22 1 1522 183 42 0 0 chr4 122851331 122851355 -32778765 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1 1522 365 245 180 28 chr4 122851692 122851861 -32778259 - MIRb SINE MIR -23 245 43 1 1522 540 316 90 34 chr4 122851862 122852095 -32778025 + LTR33 LTR ERVL 38 283 -232 1 1522 270 327 36 27 chr4 122852113 122852223 -32777897 + LTR33 LTR ERVL 351 461 -54 1 1522 1283 134 5 23 chr4 122852261 122852475 -32777645 + URR1B DNA MER1_type 1 210 -15 1 1522 1057 244 100 61 chr4 122852526 122852773 -32777347 + MTE2b LTR MaLR 52 310 -69 1 1522 1010 133 189 22 chr4 122852773 122852958 -32777162 - B3 SINE B2 0 216 1 1 1522 1057 244 100 61 chr4 122852958 122853020 -32777100 + MTE2b LTR MaLR 311 372 -7 1 1522 386 370 16 5 chr4 122853121 122853314 -32776806 + MLT1K LTR MaLR 70 264 -331 1 1522 259 275 38 0 chr4 122853494 122853574 -32776546 + MLT1L LTR MaLR 526 608 -2 1 1522 315 302 30 30 chr4 122853917 122854050 -32776070 - LTR89 LTR ERVL? -573 306 174 1 1522 244 209 52 113 chr4 122854297 122854394 -32775726 + LTR48 LTR ERV1 66 156 -631 1 1522 234 345 21 84 chr4 122854436 122854531 -32775589 - B4A SINE B4 0 292 204 1 1522 681 229 15 0 chr4 122854558 122854689 -32775431 - B1F2 SINE Alu -14 135 3 1 1522 537 247 156 50 chr4 122854694 122854873 -32775247 - B3A SINE B2 0 198 1 1 1522 342 0 0 0 chr4 122854876 122854914 -32775206 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 1522 591 85 0 0 chr4 122854915 122854997 -32775123 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1 1522 951 127 0 0 chr4 122855058 122855208 -32774912 + (TCTG)n Simple_repeat Simple_repeat 3 152 0 1 1522 366 80 0 0 chr4 122855210 122855260 -32774860 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 1 1522 508 295 8 8 chr4 122855261 122855384 -32774736 - B4 SINE B4 -87 205 83 1 1522 208 321 120 78 chr4 122855514 122855656 -32774464 + MIRc SINE MIR 15 162 -106 1 1522 236 379 8 41 chr4 122855674 122855795 -32774325 - MamRep38 DNA hAT -20 275 159 1 1522 998 215 318 25 chr4 122855867 122856191 -32773929 - MTD LTR MaLR 0 419 1 1 1522 190 174 42 42 chr4 122856280 122856328 -32773792 + MIR SINE MIR 215 262 0 1 1522 261 242 113 21 chr4 122856672 122856769 -32773351 + C573_MM Other Other 48 153 -369 1 1522 243 0 0 0 chr4 122856781 122856808 -32773312 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1522 620 218 53 91 chr4 122856809 122856833 -32773287 - B2_Mm2 SINE B2 -14 181 158 1 1522 234 128 0 0 chr4 122856833 122856872 -32773248 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1522 946 191 19 0 chr4 122856872 122857034 -32773086 - B3 SINE B2 -50 166 2 1 1522 330 301 70 128 chr4 122857055 122857347 -32772773 + MTE2a LTR MaLR 88 379 0 1 1522 977 148 0 20 chr4 122857370 122857522 -32772598 + B1_Mur4 SINE Alu 2 150 0 1 1522 395 331 47 80 chr4 122857611 122857975 -32772145 + ORR1E LTR MaLR 2 353 -6 1 1522 343 353 30 0 chr4 122858030 122858163 -32771957 + MIR SINE MIR 76 212 -50 1 1522 401 317 63 21 chr4 122858234 122858376 -32771744 - B1F2 SINE Alu -1 148 1 1 1522 1474 282 178 4 chr4 122858386 122858903 -32771217 - Tigger7 DNA MER2_type -1884 607 1 1 1522 288 130 0 0 chr4 122861132 122861178 -32768942 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1522 221 287 104 85 chr4 122861754 122861918 -32768202 + MIR3 SINE MIR 36 202 -6 1 1522 405 0 0 0 chr4 122863872 122863917 -32766203 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1522 333 0 0 0 chr4 122863917 122863953 -32766167 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1522 676 211 131 45 chr4 122864777 122864976 -32765144 - B3A SINE B2 0 216 1 1 1522 191 232 105 18 chr4 122865032 122865089 -32765031 + L2c LINE L2 3323 3384 -3 1 1522 563 257 21 14 chr4 122867138 122867280 -32762840 + B1F SINE Alu 1 143 -6 1 1522 196 30 0 57 chr4 122867295 122867330 -32762790 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 1 1522 796 165 0 8 chr4 122867472 122867600 -32762520 + B1_Mur2 SINE Alu 5 131 -18 1 1522 609 202 32 32 chr4 122867632 122867755 -32762365 - RSINE1 SINE B4 -40 125 3 1 1522 291 361 50 8 chr4 122868612 122868732 -32761388 - L2b LINE L2 -2 3373 3249 1 1522 21 36 0 0 chr4 122868917 122868945 -32761175 + AT_rich Low_complexity Low_complexity 1 28 0 1 1522 187 270 195 63 chr4 122870286 122870460 -32759660 - MIRb SINE MIR -50 218 22 1 1522 3163 94 2 0 chr4 122872060 122872466 -32757654 - MTB_Mm LTR MaLR 0 407 1 1 1522 831 274 23 18 chr4 122872570 122872789 -32757331 + ID_B1 SINE B4 5 224 0 1 1522 1088 135 39 11 chr4 122872803 122872983 -32757137 + B2_Mm2 SINE B2 1 185 -10 1 1522 183 42 0 0 chr4 122873093 122873117 -32757003 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1522 411 228 68 19 chr4 122873117 122873213 -32756907 - PB1D10 SINE Alu -13 104 3 1 1522 601 168 134 50 chr4 122873399 122873518 -32756602 + B1_Mur2 SINE Alu 5 133 -16 1 1522 444 82 0 0 chr4 122873566 122873627 -32756493 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1522 303 393 61 20 chr4 122873627 122873775 -32756345 - MER91A DNA Tip100 -40 156 3 1 1522 199 289 269 26 chr4 122874199 122874355 -32755765 + L2 LINE L2 2742 2935 -484 1 1522 1183 43 0 0 chr4 122874395 122874533 -32755587 - B1_Mus1 SINE Alu -10 138 1 1 1522 286 256 25 13 chr4 122874938 122875017 -32755103 + ORR1E LTR MaLR 280 359 0 1 1522 1037 164 16 11 chr4 122875296 122875481 -32754639 + URR1B DNA MER1_type 40 225 0 1 1522 597 234 21 28 chr4 122875803 122875948 -32754172 + B1F SINE Alu 5 148 -1 1 1522 218 105 0 26 chr4 122876074 122876113 -32754007 + (TCTCCC)n Simple_repeat Simple_repeat 4 41 0 1 1522 1180 68 0 26 chr4 122876214 122876365 -32753755 + B1_Mus2 SINE Alu 1 147 0 1 1522 284 118 11 45 chr4 122876369 122876458 -32753662 + (CAAA)n Simple_repeat Simple_repeat 2 87 0 1 1522 486 0 0 0 chr4 122877165 122877219 -32752901 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1522 588 304 55 5 chr4 122877353 122877555 -32752565 - RMER15 LTR ERVL -64 511 300 1 1522 468 0 0 0 chr4 122877811 122877863 -32752257 + (CCA)n Simple_repeat Simple_repeat 2 53 0 1 1522 1367 92 16 0 chr4 122880475 122880660 -32749460 - B2_Mm2 SINE B2 -7 188 1 1 1522 243 0 0 0 chr4 122880871 122880898 -32749222 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1522 345 47 0 0 chr4 122881964 122882007 -32748113 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1522 1170 96 0 0 chr4 122882008 122882164 -32747956 - B2_Mm2 SINE B2 -37 158 3 1 1522 190 303 225 18 chr4 122882296 122882407 -32747713 + MIRm SINE MIR 49 182 -94 1 1522 798 90 12 7 chr4 122882692 122882853 -32747267 + B2_Mm2 SINE B2 1 175 -23 1 1522 467 243 357 42 chr4 122883109 122883325 -32746795 + B4A SINE B4 9 292 0 1 1522 631 298 64 23 chr4 122883958 122884269 -32745851 - MLT1A0 LTR MaLR 0 365 9 1 1522 240 123 100 50 chr4 122884523 122884583 -32745537 + L2c LINE L2 3256 3318 -69 1 1522 791 247 57 16 chr4 122886481 122886674 -32743446 + ID_B1 SINE B4 3 203 -21 1 1522 625 250 17 86 chr4 122886670 122886845 -32743275 + ID_B1 SINE B4 8 170 -54 1 1522 327 206 92 10 chr4 122886763 122886861 -32743259 + PB1D7 SINE Alu 6 111 -9 1 1522 844 91 15 0 chr4 122886861 122886993 -32743127 + (CATA)n Simple_repeat Simple_repeat 2 135 0 1 1522 733 208 7 20 chr4 122887002 122887149 -32742971 + B1_Mus2 SINE Alu 2 146 -1 1 1522 338 280 0 0 chr4 122887257 122887332 -32742788 - MER63D DNA AcHobo -982 79 5 1 1522 237 289 128 35 chr4 122887354 122887440 -32742680 + MIRm SINE MIR 88 181 -95 1 1522 499 208 0 78 chr4 122887697 122887812 -32742308 + B3 SINE B2 96 201 -15 1 1522 900 135 191 58 chr4 122887839 122888028 -32742092 + B3 SINE B2 2 215 -1 1 1522 211 269 32 167 chr4 122888136 122888292 -32741828 - B1F SINE Alu -1 148 14 1 1522 234 143 71 0 chr4 122888251 122888293 -32741827 - B4A SINE B4 -150 142 98 1 1522 1091 90 150 0 chr4 122888294 122888461 -32741659 + B2_Mm1t SINE B2 2 193 0 1 1522 624 217 93 35 chr4 122888527 122888699 -32741421 - B3 SINE B2 -34 182 1 1 1522 319 265 41 41 chr4 122888847 122888969 -32741151 + MamRep38 DNA hAT 4 125 -170 1 1522 234 234 62 0 chr4 122889128 122889192 -32740928 - MLT1M LTR MaLR -486 186 119 1 1522 710 140 0 0 chr4 122891634 122891748 -32738372 - B1_Mm SINE Alu -1 146 33 1 1522 378 0 0 0 chr4 122892013 122892055 -32738065 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1522 252 333 0 33 chr4 122892645 122892735 -32737385 - MamRep1894 DNA hAT -3 120 34 1 1522 766 280 33 5 chr4 122896091 122896306 -32733814 + ID_B1 SINE B4 4 224 0 1 1522 209 306 54 27 chr4 122896653 122896727 -32733393 - MIR SINE MIR -160 102 27 1 1522 222 160 0 0 chr4 122897006 122897056 -32733064 + GA-rich Low_complexity Low_complexity 2 51 0 1 1522 454 259 0 0 chr4 122898546 122898662 -32731458 + PB1D10 SINE Alu 1 116 -1 1 1522 736 217 0 0 chr4 122898682 122898820 -32731300 + B1_Mur3 SINE Alu 10 147 -2 1 1522 656 168 18 123 chr4 122898822 122898985 -32731135 + B1_Mus2 SINE Alu 1 146 -1 1 1522 217 171 24 0 chr4 122899483 122899524 -32730596 + T-rich Low_complexity Low_complexity 2 43 0 1 1522 333 0 0 0 chr4 122899595 122899632 -32730488 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1522 333 0 0 0 chr4 122899632 122899668 -32730452 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1522 1211 92 26 47 chr4 122899668 122899861 -32730259 - B2_Mm2 SINE B2 -5 190 2 1 1522 357 158 53 0 chr4 122899913 122899989 -32730131 - B1_Mur3 SINE Alu 0 149 70 1 1522 432 188 27 12 chr4 122900000 122900101 -32730019 + B3 SINE B2 42 149 -44 1 1522 998 82 0 7 chr4 122900366 122900502 -32729618 + B1_Mus2 SINE Alu 1 135 -12 1 1522 343 237 135 67 chr4 122900536 122900640 -32729480 - B1_Mur1 SINE Alu -36 113 3 1 1522 1020 182 39 0 chr4 122900672 122900875 -32729245 - B3 SINE B2 -5 211 1 1 1522 294 240 104 0 chr4 122900913 122901009 -32729111 + PB1D10 SINE Alu 6 111 -6 1 1522 326 26 0 0 chr4 122901016 122901054 -32729066 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1522 598 187 14 7 chr4 122901057 122901197 -32728923 + CT-rich Low_complexity Low_complexity 3 143 0 1 1522 492 220 82 9 chr4 122901197 122901307 -32728813 - B1_Mur1 SINE Alu -14 135 18 1 1522 646 275 71 101 chr4 122901678 122901747 -32728373 - MLT1A0 LTR MaLR 0 365 308 1 1522 660 207 14 14 chr4 122901747 122901894 -32728226 + B1_Mur2 SINE Alu 2 148 -1 1 1522 646 275 71 101 chr4 122901894 122902192 -32727928 - MLT1A0 LTR MaLR -58 307 9 1 1522 239 308 146 53 chr4 122902374 122902525 -32727595 + LTR16B1 LTR ERVL 29 193 -287 1 1522 1348 81 38 0 chr4 122902561 122902747 -32727373 + B2_Mm2 SINE B2 1 193 -2 1 1522 365 319 187 40 chr4 122902783 122903034 -32727086 - B4A SINE B4 0 292 5 1 1522 265 330 26 26 chr4 122903063 122903177 -32726943 + LTR16B1 LTR ERVL 232 345 -135 1 1522 1646 236 83 42 chr4 122903177 122903729 -32726391 - RMER15 LTR ERVL 0 575 1 1 1522 554 82 12 0 chr4 122904350 122904435 -32725685 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1522 756 245 101 5 chr4 122904465 122904654 -32725466 + ID_B1 SINE B4 2 208 -16 1 1522 436 280 0 9 chr4 122904725 122904833 -32725287 + PB1D10 SINE Alu 11 117 0 1 1522 232 289 56 0 chr4 122905967 122906057 -32724063 - L2 LINE L2 -1066 2353 2259 1 1522 182 284 47 58 chr4 122906087 122906173 -32723947 - MIRc SINE MIR -62 206 119 1 1522 235 319 83 21 chr4 122906402 122906498 -32723622 - L2b LINE L2 -9 3366 3265 1 1522 390 173 4 1 chr4 122906968 122907052 -32723068 - B1_Mur1 SINE Alu -22 127 43 1 1522 259 326 130 57 chr4 122907080 122907434 -32722686 - L2a LINE L2 -128 3298 2919 1 1522 404 257 135 88 chr4 122907781 122907973 -32722147 + RMER30 DNA MER1_type 1 201 -1 1 1522 289 350 86 0 chr4 122908047 122908164 -32721956 + MER20 DNA MER1_type 87 213 -6 1 1522 364 266 0 0 chr4 122908274 122908353 -32721767 + PB1D10 SINE Alu 10 88 -29 1 1522 988 65 72 0 chr4 122908380 122908518 -32721602 + B1_Mus1 SINE Alu 1 148 0 1 1522 324 337 135 16 chr4 122908518 122908703 -32721417 + L1MEg LINE L1 1891 2098 -3986 1 1522 1445 130 4 9 chr4 122909060 122909285 -32720835 + URR1B DNA MER1_type 2 225 0 1 1522 222 312 195 21 chr4 122909370 122909560 -32720560 + L2 LINE L2 2301 2523 -896 1 1522 496 196 18 61 chr4 122910358 122910472 -32719648 + ID_B1 SINE B4 104 212 -12 1 1522 216 0 0 0 chr4 122910577 122910601 -32719519 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1522 28 29 0 0 chr4 122910950 122910985 -32719135 + GC_rich Low_complexity Low_complexity 1 35 0 1 1522 252 303 95 32 chr4 122911808 122911934 -32718186 + MIRb SINE MIR 116 249 -19 1 1522 257 250 15 15 chr4 122912000 122912065 -32718055 + CT-rich Low_complexity Low_complexity 3 67 0 1 1522 223 317 0 0 chr4 122912068 122912128 -32717992 - ID SINE ID -142 82 23 1 1522 234 269 0 0 chr4 122912077 122912129 -32717991 - ID4 SINE ID -11 72 21 1 1522 685 194 30 0 chr4 122912325 122912459 -32717661 - B1_Mus1 SINE Alu -4 144 7 1 1522 387 225 60 43 chr4 122912358 122912474 -32717646 - B4 SINE B4 -94 198 81 1 1522 485 191 71 71 chr4 122912486 122912599 -32717521 + PB1D9 SINE Alu 1 113 -7 1 1522 342 0 0 0 chr4 122912611 122912649 -32717471 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1522 195 149 141 56 chr4 122913583 122913654 -32716466 - L3 LINE CR1 -265 4224 4148 1 1522 730 172 238 6 chr4 122914184 122914348 -32715772 + B3 SINE B2 1 202 -14 1 1522 320 347 32 10 chr4 122914832 122914980 -32715140 + MIR3 SINE MIR 1 150 -126 1 1522 27 92 0 0 chr4 122916808 122916884 -32713236 + GC_rich Low_complexity Low_complexity 1 76 0 1 1522 30 27 0 0 chr4 122916945 122916982 -32713138 + GC_rich Low_complexity Low_complexity 1 37 0 1 1522 329 298 9 19 chr4 122917660 122917766 -32712354 - B1_Mus1 SINE Alu -35 113 9 1 1522 610 287 22 33 chr4 122917673 122917853 -32712267 - ID_B1 SINE B4 -43 181 4 1 1522 227 330 65 9 chr4 122918376 122918483 -32711637 + MIR SINE MIR 28 140 -68 1 1522 287 280 198 8 chr4 122918776 122918902 -32711218 + B4A SINE B4 6 155 -137 1 1522 425 257 26 9 chr4 122918910 122919024 -32711096 + RSINE1 SINE B4 50 165 0 1 1522 293 309 110 32 chr4 122919047 122919201 -32710919 + B3 SINE B2 48 213 -3 1 1522 249 364 0 0 chr4 122919205 122919282 -32710838 + B4A SINE B4 215 291 -1 1 1522 495 244 17 9 chr4 122920484 122920600 -32709520 - PB1D7 SINE Alu -3 117 1 1 1522 191 208 18 70 chr4 122921425 122921482 -32708638 - MIRb SINE MIR -53 215 162 1 1522 384 302 91 18 chr4 122921510 122921675 -32708445 + MIRb SINE MIR 44 220 -48 1 1522 357 305 69 0 chr4 122921696 122921827 -32708293 + ID_B1 SINE B4 78 217 -7 1 1522 759 260 49 5 chr4 122921849 122922054 -32708066 + ID_B1 SINE B4 1 214 -10 1 1522 358 248 99 68 chr4 122922491 122922636 -32707484 - MIRb SINE MIR -94 182 34 1 1522 1263 100 17 0 chr4 122922870 122923050 -32707070 - B2_Mm2 SINE B2 -11 184 2 1 1522 182 315 0 98 chr4 122925627 122925729 -32704391 + L2b LINE L2 1463 1554 -1865 1 1522 351 356 127 46 chr4 122925972 122926343 -32703777 + L2b LINE L2 2935 3335 -40 1 1522 300 255 75 9 chr4 122927131 122927239 -32702881 + B1F SINE Alu 4 120 0 1 1522 567 254 91 30 chr4 122927263 122927462 -32702658 + B3 SINE B2 5 215 -1 1 1522 259 224 0 0 chr4 122927492 122927541 -32702579 + G-rich Low_complexity Low_complexity 2 50 0 1 1522 614 166 0 39 chr4 122927541 122927723 -32702397 + GA-rich Low_complexity Low_complexity 1 175 0 1 1522 736 258 37 21 chr4 122927986 122928176 -32701944 - ID_B1 SINE B4 0 224 32 1 1522 2099 129 18 70 chr4 122928525 122928924 -32701196 - ORR1C1 LTR MaLR 0 378 1 1 1522 252 309 128 62 chr4 122928959 122928986 -32701134 - B4 SINE B4 0 292 267 1 1522 1053 113 17 0 chr4 122928986 122929163 -32700957 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1522 252 309 128 62 chr4 122929163 122929408 -32700712 - B4 SINE B4 -26 266 3 1 1522 327 284 28 105 chr4 122929869 122930050 -32700070 + L2 LINE L2 2421 2587 -832 1 1522 657 264 67 0 chr4 122930072 122930265 -32699855 - B3 SINE B2 -10 206 1 1 1522 382 272 0 0 chr4 122930577 122930669 -32699451 + B1F2 SINE Alu 52 143 -6 1 1522 231 36 0 0 chr4 122930836 122930864 -32699256 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1522 813 174 7 0 chr4 122930867 122931005 -32699115 - B1_Mur3 SINE Alu -6 143 5 1 1522 351 60 0 0 chr4 122931038 122931088 -32699032 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1522 1012 90 7 27 chr4 122931088 122931226 -32698894 - B1_Mus1 SINE Alu -8 140 3 1 1522 1029 145 5 63 chr4 122931227 122931263 -32698857 - B2_Mm2 SINE B2 0 195 160 1 1522 279 79 0 0 chr4 122931263 122931301 -32698819 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1522 1029 145 5 63 chr4 122931301 122931470 -32698650 - B2_Mm2 SINE B2 -36 159 2 1 1522 399 162 0 51 chr4 122931472 122931550 -32698570 - B1F SINE Alu -2 147 74 1 1522 290 208 0 0 chr4 122931555 122931608 -32698512 - B1F SINE Alu -23 126 74 1 1522 300 176 0 0 chr4 122931615 122931666 -32698454 - B1F SINE Alu -25 124 74 1 1522 317 170 0 0 chr4 122931671 122931724 -32698396 - B1F SINE Alu -23 126 74 1 1522 462 211 147 0 chr4 122931729 122931838 -32698282 - B1F SINE Alu -23 126 2 1 1522 21 71 0 0 chr4 122931889 122931931 -32698189 + AT_rich Low_complexity Low_complexity 1 42 0 1 1522 700 106 371 0 chr4 122932274 122932406 -32697714 + B2_Mm2 SINE B2 1 181 -14 1 1522 338 200 33 132 chr4 122932529 122932650 -32697470 - B1_Mur2 SINE Alu -1 148 40 1 1522 23 33 0 0 chr4 122932695 122932725 -32697395 + AT_rich Low_complexity Low_complexity 1 30 0 1 1522 349 288 114 0 chr4 122932727 122932859 -32697261 + RSINE1 SINE B4 2 148 -17 1 1522 192 97 0 0 chr4 122932874 122932905 -32697215 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1522 379 262 53 72 chr4 122932944 122933096 -32697024 + MT2B LTR ERVL 130 278 -323 1 1522 835 139 7 0 chr4 122932985 122933122 -32696998 + B1_Mur3 SINE Alu 12 149 0 1 1522 1204 54 0 0 chr4 122933126 122933274 -32696846 + B1_Mus1 SINE Alu 1 148 0 1 1522 233 119 0 23 chr4 122933281 122933324 -32696796 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 1 1522 721 155 0 58 chr4 122933335 122933472 -32696648 + B1_Mur4 SINE Alu 1 129 -21 1 1522 1098 154 89 13 chr4 122933489 122933713 -32696407 + RMER4B LTR ERVK 1 241 -344 1 1522 638 112 131 0 chr4 122933713 122933820 -32696300 + RMER4B LTR ERVK 465 585 0 1 1522 392 232 0 75 chr4 122933820 122933925 -32696195 + RCHARR1 DNA MER1_type 530 626 -348 1 1522 1129 48 14 0 chr4 122934141 122934287 -32695833 - B1_Mus1 SINE Alu 0 148 1 1 1522 334 300 145 32 chr4 122934306 122934492 -32695628 - B4A SINE B4 -85 207 1 1 1522 428 260 30 0 chr4 122934551 122934652 -32695468 - PB1D10 SINE Alu -2 115 15 1 1522 250 279 0 25 chr4 122934679 122934760 -32695360 - L1M4 LINE L1 -410 5774 5696 1 1522 518 293 109 5 chr4 122934903 122935095 -32695025 + B3 SINE B2 5 216 0 1 1522 731 162 8 15 chr4 122935120 122935252 -32694868 + B1_Mur1 SINE Alu 3 133 -16 1 1522 1270 85 11 0 chr4 122935575 122935752 -32694368 + B2_Mm1t SINE B2 1 179 -14 1 1522 443 128 325 8 chr4 122935762 122935888 -32694232 + B2_Mm2 SINE B2 29 194 -1 1 1522 201 74 0 0 chr4 122936195 122936222 -32693898 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1522 308 242 0 0 chr4 122936229 122936291 -32693829 + B1F SINE Alu 1 62 -87 1 1522 451 257 0 34 chr4 122936321 122936438 -32693682 + B1F2 SINE Alu 36 148 -1 1 1522 241 163 0 0 chr4 122936485 122936528 -32693592 - B1_Mur1 SINE Alu -37 112 70 1 1522 301 143 0 0 chr4 122936518 122936567 -32693553 - B1_Mur1 SINE Alu -31 118 70 1 1522 301 206 0 149 chr4 122936583 122936697 -32693423 - MT2B LTR ERVL -322 279 183 1 1522 559 190 17 25 chr4 122936596 122936715 -32693405 - B1F2 SINE Alu -31 118 1 1 1522 516 59 23 12 chr4 122936716 122936802 -32693318 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 1 1522 872 254 14 5 chr4 122936803 122937017 -32693103 - B3 SINE B2 0 216 1 1 1522 402 196 45 27 chr4 122937114 122937224 -32692896 + RSINE1 SINE B4 19 130 -35 1 1522 836 241 47 5 chr4 122938349 122938562 -32691558 - ID_B1 SINE B4 -1 223 2 1 1522 776 231 102 5 chr4 122938652 122938839 -32691281 + B3 SINE B2 3 207 -9 1 1522 492 200 99 8 chr4 122939006 122939127 -32690993 + B1_Mur2 SINE Alu 2 133 -16 1 1522 322 253 187 0 chr4 122939361 122939452 -32690668 - PB1D10 SINE Alu 0 117 10 1 1522 214 345 167 0 chr4 122939384 122939468 -32690652 - ID_B1 SINE B4 -53 171 74 1 1522 615 225 42 0 chr4 122939695 122939837 -32690283 + RSINE1 SINE B4 14 161 -4 1 1522 389 318 0 36 chr4 122939889 122940000 -32690120 + PB1D10 SINE Alu 2 108 -9 1 1522 1125 48 0 39 chr4 122940018 122940171 -32689949 + B1_Mus2 SINE Alu 1 147 0 1 1522 567 176 19 0 chr4 122940184 122940292 -32689828 + PB1D9 SINE Alu 3 112 -8 1 1522 506 236 8 52 chr4 122940550 122940684 -32689436 + ID_B1 SINE B4 96 223 -1 1 1522 180 0 0 0 chr4 122940707 122940727 -32689393 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1522 871 123 13 20 chr4 122940787 122940936 -32689184 - B1_Mur4 SINE Alu 0 150 3 1 1522 266 280 89 45 chr4 122940967 122941079 -32689041 + PB1D10 SINE Alu 1 117 0 1 1522 222 188 200 14 chr4 122941592 122941662 -32688458 - PB1D7 SINE Alu -14 106 24 1 1522 524 254 50 66 chr4 122941973 122942154 -32687966 - MER5A DNA MER1_type -11 178 1 1 1522 1118 153 18 57 chr4 122942156 122942385 -32687735 + URR1B DNA MER1_type 6 225 0 1 1522 194 62 0 30 chr4 122942835 122942868 -32687252 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1522 1121 68 0 0 chr4 122942868 122943015 -32687105 - B1_Mus2 SINE Alu 0 147 1 1 1522 266 204 37 0 chr4 122943555 122943609 -32686511 + B4 SINE B4 6 61 -231 1 1522 1530 176 76 0 chr4 122943610 122943939 -32686181 - RMER6A LTR ERVK 0 756 403 1 1522 396 210 12 47 chr4 122943940 122944110 -32686010 - RMER17C LTR ERVK -136 274 111 1 1522 1721 120 17 188 chr4 122944121 122944583 -32685537 - RMER6A LTR ERVK -327 429 47 1 190 3498 132 85 44 chr4 122945290 122945756 -32684364 - RMER6A LTR ERVK 0 756 292 1 1523 1604 31 0 0 chr4 122945756 122945948 -32684172 - B2_Mm1a SINE B2 0 193 2 1 1523 3498 132 85 44 chr4 122945948 122946207 -32683913 - RMER6A LTR ERVK -465 291 1 1 1523 1190 54 0 0 chr4 122946740 122946887 -32683233 + B1_Mus2 SINE Alu 1 147 0 1 1523 1572 22 0 0 chr4 122947250 122947433 -32682687 + B2_Mm1a SINE B2 2 184 -9 1 1523 915 104 0 0 chr4 122947539 122947673 -32682447 - B1_Mus1 SINE Alu -13 135 2 1 1523 1182 48 0 0 chr4 122947706 122947852 -32682268 - B1_Mm SINE Alu 0 147 2 1 1523 1198 112 6 11 chr4 122947951 122948131 -32681989 - B2_Mm1t SINE B2 -14 179 1 1 1523 1001 168 10 10 chr4 122948177 122948370 -32681750 - B2_Mm2 SINE B2 -1 194 2 1 1523 30 45 0 0 chr4 122948370 122948414 -32681706 + AT_rich Low_complexity Low_complexity 1 44 0 1 1523 919 216 39 19 chr4 122948418 122948626 -32681494 - B3 SINE B2 -4 212 1 1 1523 326 163 283 0 chr4 122948692 122948784 -32681336 - PB1D9 SINE Alu -2 118 1 1 1523 1156 62 0 0 chr4 122948827 122948973 -32681147 + B1_Mus1 SINE Alu 1 146 -2 1 1523 453 207 11 0 chr4 122949000 122949087 -32681033 + B1_Mur3 SINE Alu 3 90 -59 1 1523 361 140 0 0 chr4 122949085 122949142 -32680978 + MT2A LTR ERVL 25 81 -452 1 1523 661 239 43 0 chr4 122949177 122949315 -32680805 - B1_Mur2 SINE Alu -5 144 1 1 1523 736 183 32 13 chr4 122949355 122949510 -32680610 + MT2A LTR ERVL 82 239 -294 1 1523 2494 130 48 32 chr4 122949525 122949963 -32680157 - RLTR11B LTR ERVK -8 445 1 1 1523 587 236 4 0 chr4 122949963 122950106 -32680014 + MT2A LTR ERVL 348 531 -70 1 1523 585 0 0 0 chr4 122950109 122950174 -32679946 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1523 1346 139 8 67 chr4 122950308 122950547 -32679573 - URR1B DNA MER1_type 0 225 1 1 1523 457 299 239 27 chr4 122950756 122951126 -32678994 - LTR16B1 LTR ERVL 0 480 33 1 1523 722 296 16 0 chr4 122951874 122952060 -32678060 - B3 SINE B2 0 216 28 1 1523 387 0 0 0 chr4 122952060 122952103 -32678017 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 1 1523 216 240 0 39 chr4 122952739 122952791 -32677329 - B3 SINE B2 -165 51 2 1 1523 413 235 74 25 chr4 122952903 122953025 -32677095 - RSINE1 SINE B4 -30 135 8 1 1523 461 17 17 0 chr4 122953043 122953101 -32677019 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 1523 452 275 90 22 chr4 122953171 122953305 -32676815 + ID_B1 SINE B4 78 220 -4 1 1523 1172 62 0 0 chr4 122953569 122953715 -32676405 - B1_Mus2 SINE Alu -1 146 1 1 1523 822 141 42 7 chr4 122953814 122953957 -32676163 + B1_Mur4 SINE Alu 1 148 -2 1 1523 243 88 0 0 chr4 122954983 122955017 -32675103 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1523 596 133 9 45 chr4 122955017 122955127 -32674993 - B1_Mus1 SINE Alu -11 137 32 1 1523 554 236 21 0 chr4 122955143 122955287 -32674833 - B1_Mur3 SINE Alu 0 149 3 1 1523 1184 48 0 0 chr4 122955431 122955578 -32674542 - B1_Mus2 SINE Alu 0 147 1 1 1523 224 102 0 93 chr4 122955594 122955624 -32674496 + A-rich Low_complexity Low_complexity 1 26 0 1 1523 1031 97 14 0 chr4 122955624 122955768 -32674352 + B1_Mus2 SINE Alu 2 147 0 1 1523 224 102 0 93 chr4 122955768 122955791 -32674329 + A-rich Low_complexity Low_complexity 27 49 0 1 1523 1298 78 10 5 chr4 122955798 122955990 -32674130 + B2_Mm1t SINE B2 1 193 0 1 1523 360 318 0 0 chr4 122955992 122956080 -32674040 - PB1D7 SINE Alu -13 107 20 1 1523 244 308 75 32 chr4 122956001 122956095 -32674025 - ID_B1 SINE B4 -48 176 79 1 1523 370 280 429 35 chr4 122956121 122956284 -32673836 + B4A SINE B4 1 227 -65 1 1523 437 230 97 0 chr4 122956288 122956401 -32673719 + RSINE1 SINE B4 4 127 -38 1 1523 903 46 122 8 chr4 122956453 122956584 -32673536 - B1_Mus2 SINE Alu 0 147 2 1 1523 267 362 0 0 chr4 122956599 122956668 -32673452 + B4A SINE B4 223 291 -1 1 1523 223 191 0 45 chr4 122957113 122957142 -32672978 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1523 597 232 119 59 chr4 122957142 122957344 -32672776 - B3 SINE B2 0 216 3 1 1523 223 191 0 45 chr4 122957344 122957380 -32672740 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1523 303 304 15 115 chr4 122957434 122957467 -32672653 - PB1D10 SINE Alu 0 117 99 1 1523 714 169 0 30 chr4 122957467 122957601 -32672519 - B1_Mur2 SINE Alu -19 130 1 1 1523 303 304 15 115 chr4 122957601 122957697 -32672423 - PB1D10 SINE Alu -19 98 1 1 1523 660 226 35 9 chr4 122957770 122957950 -32672170 - B3 SINE B2 -3 195 1 1 1523 242 281 265 30 chr4 122958090 122958222 -32671898 - L2a LINE L2 0 3426 3264 1 1523 726 145 129 8 chr4 122958330 122958462 -32671658 - B1_Mus1 SINE Alu 0 148 1 1 1523 416 222 0 24 chr4 122958464 122958547 -32671573 - B1_Mus1 SINE Alu -67 81 1 1 1523 239 170 0 41 chr4 122958547 122958639 -32671481 + T-rich Low_complexity Low_complexity 7 94 0 1 1523 774 51 246 0 chr4 122958639 122958757 -32671363 - B1_Mm SINE Alu 0 147 1 1 1523 516 262 49 7 chr4 122958762 122958904 -32671216 - B1_Mur1 SINE Alu 0 149 2 1 1523 315 203 0 0 chr4 122960134 122960203 -32669917 + A-rich Low_complexity Low_complexity 1 69 0 1 1523 1058 53 0 0 chr4 122961784 122961916 -32668204 + B1_Mus1 SINE Alu 1 132 -16 1 1523 367 189 91 40 chr4 122962602 122962692 -32667428 - B1_Mur2 SINE Alu -11 138 44 1 1523 1584 136 300 30 chr4 122962692 122963125 -32666995 - RMER15 LTR ERVL 0 575 26 1 1523 645 169 58 14 chr4 122963560 122963698 -32666422 + B1_Mm SINE Alu 2 145 -2 1 1523 220 158 0 0 chr4 122964223 122964261 -32665859 + B1F SINE Alu 84 121 -28 1 1523 288 0 0 0 chr4 122964576 122964608 -32665512 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1523 252 0 0 0 chr4 122964608 122964635 -32665485 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1523 648 177 46 0 chr4 122964916 122965046 -32665074 - B1_Mur3 SINE Alu -7 142 7 1 1523 485 259 115 0 chr4 122965063 122965202 -32664918 - ID_B1 SINE B4 -54 170 16 1 1523 531 0 0 0 chr4 122965379 122965438 -32664682 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1523 315 0 0 0 chr4 122965438 122965472 -32664648 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1523 292 290 0 0 chr4 122965574 122965643 -32664477 - RSINE1 SINE B4 -85 80 12 1 1523 25 75 0 0 chr4 122965776 122965829 -32664291 + AT_rich Low_complexity Low_complexity 1 53 0 1 1523 415 324 36 0 chr4 122965864 122966003 -32664117 + B4 SINE B4 24 167 -125 1 1523 251 190 17 0 chr4 122967081 122967139 -32662981 - L1ME4a LINE L1 -113 6011 5953 1 1523 1636 21 0 0 chr4 122967671 122967864 -32662256 + B2_Mm1a SINE B2 1 193 0 1 1523 744 154 183 41 chr4 122969621 122969790 -32660330 - B2_Mm2 SINE B2 -2 193 1 1 1523 386 174 128 0 chr4 122969793 122969879 -32660241 - PB1D10 SINE Alu 0 117 21 1 1523 514 155 89 18 chr4 122969899 122970011 -32660109 - PB1D9 SINE Alu 0 120 1 1 1523 546 210 76 42 chr4 122970805 122970949 -32659171 - B1_Mur2 SINE Alu 0 149 1 1 1523 1362 44 61 0 chr4 122971341 122971522 -32658598 + B2_Mm1t SINE B2 2 193 0 1 1523 358 349 97 20 chr4 122973863 122974059 -32656061 + B4 SINE B4 81 291 -1 1 1523 242 256 60 12 chr4 122974401 122974484 -32655636 + ID_B1 SINE B4 110 196 -28 1 1523 213 200 141 14 chr4 122974431 122974502 -32655618 + B1F SINE Alu 67 146 -3 1 1523 254 286 78 0 chr4 122974624 122974701 -32655419 + PB1D10 SINE Alu 13 95 -22 1 1523 1141 48 0 20 chr4 122976157 122976307 -32653813 - B1_Mus2 SINE Alu 0 147 1 1 1523 1069 70 0 7 chr4 122976945 122977088 -32653032 + B1_Mm SINE Alu 1 142 -5 1 1523 1011 92 92 0 chr4 122977451 122977604 -32652516 + B2_Mm1t SINE B2 1 167 -26 1 1523 302 164 0 35 chr4 122977655 122977712 -32652408 + B2_Mm2 SINE B2 47 101 -94 1 1523 311 270 157 21 chr4 122977781 122977921 -32652199 - MLT1D LTR MaLR -98 407 249 1 1523 21 57 0 0 chr4 122978323 122978358 -32651762 + AT_rich Low_complexity Low_complexity 1 35 0 1 1523 2651 170 112 19 chr4 122978371 122978994 -32651126 - RLTR13B1 LTR ERVK -208 685 5 1 1523 1018 57 50 0 chr4 122979137 122979277 -32650843 + B1_Mus2 SINE Alu 1 147 0 1 1523 234 295 0 16 chr4 122979294 122979356 -32650764 - PB1D10 SINE Alu -56 61 1 1 1523 323 256 114 16 chr4 122979380 122979503 -32650617 - B1_Mur2 SINE Alu -14 135 1 1 1523 219 231 39 0 chr4 122979457 122979509 -32650611 - B4 SINE B4 -159 133 80 1 1523 658 174 149 0 chr4 122979520 122979641 -32650479 - B1_Mur4 SINE Alu -2 148 10 1 1523 866 210 44 6 chr4 122979690 122979872 -32650248 + B3 SINE B2 3 191 -25 1 1523 241 230 115 0 chr4 122980466 122980553 -32649567 - RMER15 LTR ERVL -99 476 380 1 1523 351 0 0 0 chr4 122980705 122980744 -32649376 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1523 225 0 0 0 chr4 122980744 122980768 -32649352 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1523 258 146 0 0 chr4 122980889 122980930 -32649190 - L1M5 LINE L1 -464 5660 5620 1 1523 682 176 66 7 chr4 122980944 122981081 -32649039 + B1_Mur1 SINE Alu 4 148 -1 1 1523 429 170 20 20 chr4 122981081 122981183 -32648937 - B3A SINE B2 0 198 97 1 1523 331 239 76 43 chr4 122981202 122981281 -32648839 - B1F1 SINE Alu -46 103 21 1 1523 1893 115 190 0 chr4 122981281 122981612 -32648508 + ORR1B1 LTR MaLR 1 394 0 1 1523 331 239 76 43 chr4 122981612 122981624 -32648496 - B1F1 SINE Alu -129 20 9 1 1523 606 223 104 44 chr4 122981645 122981664 -32648456 - B3A SINE B2 -4 194 166 1 1523 282 29 0 0 chr4 122981664 122981699 -32648421 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1523 606 223 104 44 chr4 122981699 122981862 -32648258 - B3A SINE B2 -33 165 1 1 1523 1425 53 0 26 chr4 122982101 122982294 -32647826 + B2_Mm2 SINE B2 1 188 -7 1 1523 30 27 0 0 chr4 122982316 122982353 -32647767 + AT_rich Low_complexity Low_complexity 1 37 0 1 1523 582 126 0 21 chr4 122982353 122982450 -32647670 - B2_Mm2 SINE B2 -99 96 2 1 1523 886 138 7 0 chr4 122982470 122982608 -32647512 - B1_Mus1 SINE Alu 0 148 10 1 1523 381 287 38 83 chr4 122982514 122982647 -32647473 - MT2B LTR ERVL -344 257 131 1 1523 341 174 135 35 chr4 122982623 122982733 -32647387 - B1_Mur2 SINE Alu 0 120 11 1 1523 252 0 0 0 chr4 122982744 122982772 -32647348 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1523 521 313 0 0 chr4 122982772 122982906 -32647214 - ID_B1 SINE B4 -13 211 78 1 1523 709 42 0 40 chr4 122982941 122983041 -32647079 - B1_Mus2 SINE Alu -1 146 51 1 1523 274 231 24 60 chr4 122982979 122983062 -32647058 - MT2B LTR ERVL -337 264 185 1 1523 320 0 0 24 chr4 122983519 122983560 -32646560 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1523 536 227 22 29 chr4 122983560 122983696 -32646424 - RSINE1 SINE B4 -25 140 6 1 1523 415 230 29 20 chr4 122983718 122983820 -32646300 - ID_B1 SINE B4 0 224 122 1 1523 464 230 183 7 chr4 122983851 122984004 -32646116 - B4A SINE B4 -73 219 40 1 1523 1132 48 7 0 chr4 122984794 122984939 -32645181 + B1_Mus1 SINE Alu 3 148 0 1 1523 862 125 41 20 chr4 122985883 122986030 -32644090 - B1_Mur4 SINE Alu 0 150 1 1 1523 201 74 0 0 chr4 122987671 122987698 -32642422 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 1523 808 83 59 0 chr4 122987808 122987977 -32642143 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 1523 189 0 0 0 chr4 122987979 122988000 -32642120 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1523 387 0 0 0 chr4 122988143 122988186 -32641934 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 1523 317 346 100 65 chr4 122988194 122988534 -32641586 + ORR1D2 LTR MaLR 13 364 -6 1 1523 1234 161 24 9 chr4 122988655 122988868 -32641252 - B3 SINE B2 0 216 1 1 1523 469 204 102 0 chr4 122989904 122990002 -32640118 - PB1D9 SINE Alu -12 108 1 1 1523 486 0 0 0 chr4 122991048 122991102 -32639018 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1523 243 133 152 91 chr4 122991575 122991589 -32638531 - B1_Mur2 SINE Alu -3 146 137 1 1523 360 0 0 0 chr4 122991589 122991629 -32638491 + (TTGTG)n Simple_repeat Simple_repeat 3 42 0 1 1523 180 0 0 0 chr4 122991629 122991649 -32638471 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1523 243 133 152 91 chr4 122991649 122991699 -32638421 - B1_Mur2 SINE Alu -13 136 78 1 1523 595 115 246 9 chr4 122991711 122991825 -32638295 - B1_Mus1 SINE Alu -7 141 1 1 1523 248 0 31 0 chr4 122992536 122992568 -32637552 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 1 1523 318 260 0 0 chr4 122992583 122992656 -32637464 + ID_B1 SINE B4 121 193 -31 1 1523 914 124 22 0 chr4 122994587 122994724 -32635396 - B1_Mur4 SINE Alu -8 142 3 1 1523 870 10 0 0 chr4 122995300 122995399 -32634721 + (TTTCC)n Simple_repeat Simple_repeat 4 102 0 1 1523 301 195 0 5 chr4 122995429 122995494 -32634626 - B2_Mm2 SINE B2 -107 109 47 1 1523 1166 94 35 0 chr4 122995541 122995712 -32634408 - B2_Mm1t SINE B2 -14 179 3 1 1523 510 265 54 0 chr4 122995736 122995883 -32634237 + ID_B1 SINE B4 70 224 0 1 1523 348 250 0 0 chr4 122996497 122996569 -32633551 + ID2 SINE ID 2 73 -10 1 1523 1279 68 22 11 chr4 122996582 122996761 -32633359 + B2_Mm2 SINE B2 2 182 -13 1 1523 303 142 0 22 chr4 122996792 122996858 -32633262 + B2_Mm2 SINE B2 47 109 -107 1 1523 30 0 0 0 chr4 122996870 122996900 -32633220 + AT_rich Low_complexity Low_complexity 1 30 0 1 1523 1080 127 0 0 chr4 122998053 122998276 -32631844 + (CA)n Simple_repeat Simple_repeat 1 223 0 1 1523 1226 80 6 0 chr4 122998287 122998463 -32631657 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1523 1212 79 10 92 chr4 123003092 123003287 -32626833 + B2_Mm1t SINE B2 1 179 -14 1 1523 379 122 0 5 chr4 123003319 123003384 -32626736 + B2_Mm2 SINE B2 47 109 -107 2 1523 24 53 0 0 chr4 123003830 123003868 -32626252 + AT_rich Low_complexity Low_complexity 1 38 0 3 1523 918 152 0 0 chr4 123005166 123005324 -32624796 + CT-rich Low_complexity Low_complexity 2 159 0 4 1523 1132 62 7 33 chr4 123005325 123005476 -32624644 - B1_Mus1 SINE Alu 0 148 2 5 1523 995 115 6 0 chr4 123005477 123005634 -32624486 + (TTTC)n Simple_repeat Simple_repeat 4 161 0 6 1523 601 178 9 0 chr4 123005634 123005741 -32624379 - PB1D7 SINE Alu -12 108 1 7 1523 689 257 32 32 chr4 123006630 123006819 -32623301 + B3A SINE B2 4 192 -6 8 1523 285 370 95 14 chr4 123006976 123007124 -32622996 - MER20 DNA MER1_type -58 161 2 9 1523 1054 96 0 14 chr4 123007425 123007573 -32622547 + B2_Mm2 SINE B2 28 173 -22 1 1523 217 174 0 0 chr4 123007610 123007656 -32622464 + B3 SINE B2 64 109 -107 1 1523 22 0 0 0 chr4 123007662 123007684 -32622436 + AT_rich Low_complexity Low_complexity 1 22 0 1 1523 846 278 52 45 chr4 123007849 123008135 -32621985 - B4A SINE B4 0 292 5 1 1523 294 29 0 0 chr4 123008399 123008434 -32621686 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1523 1424 34 102 0 chr4 123008466 123008642 -32621478 - B2_Mm2 SINE B2 0 195 2 1 1523 529 253 163 7 chr4 123008837 123008984 -32621136 + B4 SINE B4 123 292 0 1 1523 357 110 41 33 chr4 123008984 123009106 -32621014 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1523 714 97 22 43 chr4 123009128 123009312 -32620808 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1523 1961 162 118 90 chr4 123009332 123009766 -32620354 + RLTR41 LTR ERV1 1 446 0 1 1523 271 161 22 67 chr4 123009820 123010000 -32620120 + (CACAC)n Simple_repeat Simple_repeat 4 175 0 1 1523 299 294 26 35 chr4 123010080 123010193 -32619927 - MER20 DNA MER1_type -14 205 94 2 1523 452 243 29 19 chr4 123010325 123010430 -32619690 + RSINE1 SINE B4 43 148 -17 2 1523 44 46 0 0 chr4 123010451 123010516 -32619604 + AT_rich Low_complexity Low_complexity 1 65 0 2 1523 626 247 123 0 chr4 123010528 123010690 -32619430 - B3A SINE B2 -16 182 1 2 1523 23 0 0 0 chr4 123010690 123010713 -32619407 + AT_rich Low_complexity Low_complexity 1 23 0 2 1523 659 262 86 40 chr4 123011076 123011354 -32618766 + B4A SINE B4 1 291 -1 2 1523 315 0 0 0 chr4 123011354 123011389 -32618731 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1523 414 179 25 13 chr4 123013717 123013796 -32616324 - ID4 SINE ID -2 81 2 2 1523 570 294 72 10 chr4 123013809 123014008 -32616112 - B3A SINE B2 0 216 12 2 1523 796 108 20 13 chr4 123014019 123014169 -32615951 + (TTCTC)n Simple_repeat Simple_repeat 5 155 0 2 1523 1310 67 6 0 chr4 123014170 123014348 -32615772 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 3 1523 287 253 38 12 chr4 123014348 123014428 -32615692 - PB1D10 SINE Alu -15 102 21 3 1523 1329 55 49 6 chr4 123014481 123014664 -32615456 + B2_Mm2 SINE B2 3 193 -2 3 1523 261 354 35 7 chr4 123014725 123014870 -32615250 + L1ME3 LINE L1 5844 5992 -170 3 1523 222 196 36 0 chr4 123015014 123015070 -32615050 + MIR SINE MIR 73 130 -78 3 1523 555 16 0 0 chr4 123015323 123015387 -32614733 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1523 573 15 0 0 chr4 123015387 123015452 -32614668 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1523 215 217 0 0 chr4 123015573 123015619 -32614501 + L2a LINE L2 3381 3426 0 3 1523 312 143 0 0 chr4 123015619 123015675 -32614445 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 3 1523 866 163 14 7 chr4 123016489 123016631 -32613489 + B1_Mus2 SINE Alu 5 147 0 3 1523 507 289 7 34 chr4 123016705 123016852 -32613268 - B1F SINE Alu -5 144 2 4 1523 293 307 3 30 chr4 123016901 123017207 -32612913 + G-rich Low_complexity Low_complexity 1 297 0 4 1523 619 180 26 18 chr4 123017359 123017417 -32612703 - PB1D9 SINE Alu -1 119 59 4 1523 189 0 0 0 chr4 123017417 123017438 -32612682 + (CCCCCA)n Simple_repeat Simple_repeat 5 25 0 4 1523 619 180 26 18 chr4 123017438 123017492 -32612628 - PB1D9 SINE Alu -62 58 6 4 1523 184 325 100 0 chr4 123017504 123017584 -32612536 - MIRm SINE MIR -125 151 61 4 1523 437 229 77 62 chr4 123018366 123018496 -32611624 + B3 SINE B2 67 198 -18 4 1523 423 0 0 0 chr4 123018498 123018545 -32611575 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1523 773 207 27 14 chr4 123018837 123018984 -32611136 + B3 SINE B2 68 216 0 4 1523 228 255 0 0 chr4 123021035 123021082 -32609038 + CT-rich Low_complexity Low_complexity 3 49 0 4 1523 560 221 70 16 chr4 123021505 123021634 -32608486 - B1F2 SINE Alu -9 140 5 4 1523 207 0 0 0 chr4 123021656 123021679 -32608441 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1523 225 163 0 44 chr4 123021716 123021761 -32608359 - B2_Mm2 SINE B2 -105 90 48 5 1523 1438 94 16 0 chr4 123021807 123021998 -32608122 - B2_Mm2 SINE B2 -1 194 1 5 1523 1326 96 11 0 chr4 123022026 123022204 -32607916 - B2_Mm1t SINE B2 -12 181 2 5 1523 396 227 178 8 chr4 123022204 123022333 -32607787 - B3A SINE B2 -3 195 45 5 1523 1461 148 103 45 chr4 123022465 123022756 -32607364 + RLTR15 LTR ERVK 52 359 0 5 1523 312 240 80 115 chr4 123022766 123022879 -32607241 + B1_Mur2 SINE Alu 41 149 0 5 1523 467 189 23 8 chr4 123022881 123023014 -32607106 + GA-rich Low_complexity Low_complexity 3 137 0 5 1523 1222 61 0 0 chr4 123023072 123023220 -32606900 + B1_Mus1 SINE Alu 1 148 0 5 1523 533 144 253 56 chr4 123023504 123023666 -32606454 - B2_Mm2 SINE B2 -1 194 1 5 1523 951 67 200 7 chr4 123023666 123023816 -32606304 - B2_Mm1t SINE B2 -14 179 1 6 1523 565 252 104 7 chr4 123024514 123024658 -32605462 - RSINE1 SINE B4 -4 161 4 6 1523 349 320 40 16 chr4 123024717 123024841 -32605279 - RSINE1 SINE B4 -35 130 4 6 1523 705 172 94 29 chr4 123025329 123025467 -32604653 + B1_Mur2 SINE Alu 1 147 -2 6 1523 327 229 0 0 chr4 123025504 123025565 -32604555 - B3A SINE B2 -111 87 27 6 1523 705 112 93 0 chr4 123025564 123025671 -32604449 - B1_Mus2 SINE Alu -21 126 10 6 1523 811 200 97 32 chr4 123025711 123025897 -32604223 - B3A SINE B2 0 198 1 6 1523 23 33 0 0 chr4 123026160 123026190 -32603930 + AT_rich Low_complexity Low_complexity 1 30 0 6 1523 1137 95 0 0 chr4 123026556 123026704 -32603416 - B1_Mus1 SINE Alu 0 148 1 6 1523 22 0 0 0 chr4 123027720 123027742 -32602378 + AT_rich Low_complexity Low_complexity 1 22 0 6 1523 189 323 140 0 chr4 123028450 123028543 -32601577 + MIR SINE MIR 28 133 -75 7 1523 23 0 0 0 chr4 123029356 123029379 -32600741 + AT_rich Low_complexity Low_complexity 1 23 0 7 1523 323 321 28 0 chr4 123030941 123031050 -32599070 - PB1D10 SINE Alu 0 117 6 7 1523 304 333 0 11 chr4 123033565 123033653 -32596467 + PB1 SINE Alu 31 117 -10 7 1523 270 0 0 0 chr4 123033653 123033683 -32596437 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1523 180 0 0 0 chr4 123033683 123033702 -32596418 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1523 283 310 254 17 chr4 123034081 123034199 -32595921 + B4A SINE B4 132 277 -15 7 1523 386 276 104 43 chr4 123034313 123034476 -32595644 - L1M5 LINE L1 -317 5807 5635 7 1523 703 241 29 17 chr4 123034625 123034798 -32595322 - B3 SINE B2 -5 211 37 7 1523 227 100 24 24 chr4 123034816 123034857 -32595263 - B1_Mm SINE Alu -1 146 106 7 1523 216 0 0 0 chr4 123034894 123034918 -32595202 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1523 459 0 0 0 chr4 123034918 123034968 -32595152 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1523 392 243 79 16 chr4 123034996 123035167 -32594953 - B3A SINE B2 -18 177 1 8 1523 297 0 0 0 chr4 123035256 123035289 -32594831 + (CATA)n Simple_repeat Simple_repeat 3 35 0 8 1523 272 301 67 10 chr4 123035591 123035695 -32594425 - PB1D10 SINE Alu -6 111 2 8 1523 1480 60 38 0 chr4 123036349 123036534 -32593586 + B2_Mm2 SINE B2 1 192 -3 8 1523 1470 53 26 11 chr4 123036536 123036696 -32593424 + B2_Mm1t SINE B2 1 160 -33 8 1523 243 0 0 0 chr4 123036696 123036723 -32593397 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1523 1470 53 26 11 chr4 123036723 123036752 -32593368 + B2_Mm1t SINE B2 161 193 0 8 1523 202 62 62 0 chr4 123036754 123036786 -32593334 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1523 397 299 54 76 chr4 123036936 123037164 -32592956 + MIR SINE MIR 4 249 -19 8 1523 438 221 106 0 chr4 123037832 123037936 -32592184 - ID_B1 SINE B4 0 224 110 9 1523 794 50 244 0 chr4 123038626 123038745 -32591375 - B1_Mus1 SINE Alu 0 148 1 9 1523 186 71 0 0 chr4 123041517 123041545 -32588575 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1523 383 234 170 0 chr4 123041954 123042048 -32588072 - RSINE1 SINE B4 -45 120 11 9 1523 416 241 59 51 chr4 123042078 123042196 -32587924 - B1F2 SINE Alu -9 140 22 9 1523 427 306 8 0 chr4 123042683 123042804 -32587316 - B1_Mur2 SINE Alu -1 148 27 9 1523 1027 76 8 0 chr4 123042829 123042961 -32587159 - B1_Mus1 SINE Alu 0 148 16 9 1523 417 255 44 108 chr4 123042831 123042989 -32587131 - B4A SINE B4 -68 224 77 9 1523 232 248 73 88 chr4 123042868 123043005 -32587115 - ORR1B1-int LTR MaLR -755 754 620 9 1523 482 220 11 42 chr4 123043184 123043279 -32586841 - RSINE1 SINE B4 -72 93 2 9 1523 2913 63 62 7 chr4 123043723 123044141 -32585979 + Lx LINE L1 6026 6466 -188 1 1523 709 236 38 84 chr4 123044279 123044492 -32585628 + B3 SINE B2 14 216 0 1 1523 579 240 199 0 chr4 123044584 123044730 -32585390 - ID_B1 SINE B4 -1 223 49 1 1523 947 109 0 58 chr4 123046242 123046398 -32583722 + B1_Mur3 SINE Alu 2 148 -1 1 1523 684 0 0 0 chr4 123046501 123046577 -32583543 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1 1523 604 123 123 0 chr4 123046597 123046703 -32583417 - B1_Mur4 SINE Alu -31 119 1 1 1523 393 229 70 40 chr4 123046615 123046715 -32583405 - B4 SINE B4 -113 179 77 1 1523 339 276 26 0 chr4 123047278 123047354 -32582766 + ID_B1 SINE B4 147 224 0 1 1523 292 297 68 0 chr4 123048088 123048162 -32581958 + ID SINE ID 2 80 -144 1 1523 781 92 0 27 chr4 123048639 123048751 -32581369 - B1_Mus1 SINE Alu 0 148 40 1 1523 329 183 27 27 chr4 123048691 123048764 -32581356 - RLTR25B LTR ERVK -530 498 426 1 1523 1372 116 0 0 chr4 123049833 123050023 -32580097 - B2_Mm2 SINE B2 -5 190 1 1 1523 689 221 155 0 chr4 123050233 123050414 -32579706 - B3 SINE B2 -6 210 2 1 1523 264 333 19 47 chr4 123050708 123050815 -32579305 + PB1D10 SINE Alu 5 108 -9 1 1523 703 191 59 0 chr4 123051142 123051278 -32578842 + B3 SINE B2 8 151 -65 1 1523 597 191 26 17 chr4 123051273 123051390 -32578730 + B1_Mur4 SINE Alu 33 150 0 1 1523 1064 194 34 19 chr4 123052230 123052435 -32577685 - B3 SINE B2 -7 209 2 1 1523 504 0 0 0 chr4 123052607 123052663 -32577457 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1523 333 0 0 0 chr4 123052663 123052699 -32577421 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1523 185 296 40 66 chr4 123052717 123052793 -32577327 + MIR SINE MIR 38 111 -97 1 1523 679 246 8 0 chr4 123052921 123053047 -32577073 - RSINE1 SINE B4 -36 129 3 1 1523 471 198 23 0 chr4 123053372 123053458 -32576662 - B1_Mur3 SINE Alu 0 149 62 1 1523 977 202 9 102 chr4 123053978 123054204 -32575916 - B3 SINE B2 -11 205 1 1 1523 189 0 0 0 chr4 123054911 123054932 -32575188 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1523 221 317 96 127 chr4 123054955 123055085 -32575035 - ID_B1 SINE B4 -63 161 31 1 1523 432 88 10 81 chr4 123055085 123055184 -32574936 + Lx LINE L1 6563 6654 0 1 1523 221 317 96 127 chr4 123055184 123055219 -32574901 - ID SINE ID -194 30 1 1 1523 220 239 0 0 chr4 123056670 123056716 -32573404 + ID4_ SINE ID 38 83 0 1 1523 222 37 0 0 chr4 123057215 123057242 -32572878 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1523 216 86 0 0 chr4 123057265 123057300 -32572820 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1523 315 0 0 0 chr4 123058360 123058395 -32571725 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 1 1523 780 151 64 14 chr4 123060890 123061031 -32569089 + B1_Mur3 SINE Alu 2 149 0 1 1523 1091 36 65 0 chr4 123061476 123061614 -32568506 + B1_Mm SINE Alu 1 147 0 1 1523 207 0 0 0 chr4 123061623 123061646 -32568474 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1523 241 304 58 0 chr4 123061684 123061753 -32568367 + ID4_ SINE ID 11 83 0 1 1523 554 243 75 27 chr4 123062414 123062600 -32567520 + Tigger16b DNA Tigger 110 304 -33 1 1523 23 0 0 0 chr4 123063462 123063485 -32566635 + AT_rich Low_complexity Low_complexity 1 23 0 1 1523 183 80 0 0 chr4 123063527 123063552 -32566568 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1523 818 62 5 9 chr4 123064745 123064867 -32565253 + B1_Mus2 SINE Alu 25 147 0 1 1523 278 0 54 0 chr4 123064930 123064967 -32565153 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1523 1076 108 13 0 chr4 123065378 123065536 -32564584 + B2_Mm2 SINE B2 2 161 -34 1 1523 315 0 0 0 chr4 123065536 123065571 -32564549 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1 1523 617 266 83 22 chr4 123065571 123065593 -32564527 + B3A SINE B2 173 193 -5 1 1523 333 197 77 26 chr4 123065902 123065980 -32564140 - ID4 SINE ID 0 83 2 1 1523 288 258 124 0 chr4 123066064 123066161 -32563959 - B1F1 SINE Alu -40 109 1 1 1523 270 0 0 0 chr4 123066695 123066725 -32563395 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1523 441 289 29 0 chr4 123067201 123067305 -32562815 - PB1D10 SINE Alu -8 109 3 1 1523 1411 232 55 10 chr4 123067415 123067724 -32562396 + Lx5 LINE L1 6719 7041 -9 1 1523 355 221 0 44 chr4 123068645 123068735 -32561385 + PB1D10 SINE Alu 32 117 0 1 1523 404 252 101 0 chr4 123068936 123069035 -32561085 - PB1D10 SINE Alu -6 111 3 1 1523 1557 170 78 25 chr4 123069231 123069551 -32560569 + ORR1B1 LTR MaLR 1 337 -57 1 1523 829 125 61 30 chr4 123069552 123069717 -32560403 + B2_Mm2 SINE B2 1 170 -25 1 1523 416 116 0 55 chr4 123069729 123069802 -32560318 + ORR1B1 LTR MaLR 325 393 -1 1 1523 378 0 0 0 chr4 123070250 123070292 -32559828 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1523 486 0 0 0 chr4 123070292 123070345 -32559775 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1523 334 278 77 11 chr4 123070575 123070666 -32559454 + PB1D9 SINE Alu 9 105 -15 1 1523 419 264 315 12 chr4 123070686 123070851 -32559269 + B3 SINE B2 2 216 0 1 1523 342 0 0 0 chr4 123070985 123071023 -32559097 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1523 1201 35 0 0 chr4 123071025 123071166 -32558954 - B1_Mus2 SINE Alu -6 141 1 1 1523 661 247 25 0 chr4 123072959 123073117 -32557003 + B3 SINE B2 48 209 -7 1 1523 298 250 40 0 chr4 123073570 123073646 -32556474 + B3 SINE B2 9 87 -129 1 1523 1153 105 70 27 chr4 123073713 123073899 -32556221 + B2_Mm2 SINE B2 2 195 0 1 1523 219 231 0 37 chr4 123074680 123074761 -32555359 + A-rich Low_complexity Low_complexity 2 79 0 1 1523 271 270 0 16 chr4 123075936 123076000 -32554120 + ID4_ SINE ID 4 66 -17 1 1524 460 157 0 33 chr4 123076832 123076924 -32553196 + PB1D9 SINE Alu 32 120 0 1 1524 265 208 0 36 chr4 123077111 123077166 -32552954 + B1_Mus2 SINE Alu 2 54 -93 1 1524 210 222 0 0 chr4 123077168 123077213 -32552907 + (CAGG)n Simple_repeat Simple_repeat 2 46 0 1 1524 432 155 28 0 chr4 123077213 123077284 -32552836 + B1F2 SINE Alu 40 112 -37 1 1524 288 258 112 0 chr4 123077284 123077302 -32552818 + B4 SINE B4 125 223 -69 1 1524 400 275 0 60 chr4 123077560 123077676 -32552444 - PB1D10 SINE Alu -7 110 2 1 1524 783 218 126 10 chr4 123077743 123077942 -32552178 + ID_B1 SINE B4 3 224 0 1 1524 300 291 85 50 chr4 123079631 123079772 -32550348 + MamSINE1 SINE tRNA 7 152 -138 1 1524 23 0 0 0 chr4 123079889 123079912 -32550208 + AT_rich Low_complexity Low_complexity 1 23 0 1 1524 300 286 124 0 chr4 123080044 123080149 -32549971 + ID_B1 SINE B4 107 224 0 1 1524 240 245 19 0 chr4 123080905 123080958 -32549162 - B1F SINE Alu -1 148 95 1 1524 363 281 98 30 chr4 123081443 123081575 -32548545 + L2b LINE L2 3233 3373 -2 1 1524 599 215 84 8 chr4 123082103 123082234 -32547886 + B1F1 SINE Alu 1 141 -8 1 1524 600 199 63 49 chr4 123082590 123082733 -32547387 + B1_Mur1 SINE Alu 1 145 -4 1 1524 353 248 50 50 chr4 123083530 123083649 -32546471 + PB1D7 SINE Alu 1 119 -1 1 1524 214 282 57 34 chr4 123083653 123083741 -32546379 - MIR3 SINE MIR -21 187 98 1 1524 766 175 7 7 chr4 123083846 123083990 -32546130 + B1_Mur4 SINE Alu 6 149 -1 1 1524 219 88 0 0 chr4 123083993 123084027 -32546093 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1524 257 135 75 19 chr4 123091684 123091737 -32538383 + B1_Mur4 SINE Alu 44 99 -51 1 1524 315 65 0 0 chr4 123091765 123091811 -32538309 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1524 577 54 0 0 chr4 123091902 123091976 -32538144 - B1_Mus2 SINE Alu -9 138 65 1 1524 264 245 10 96 chr4 123091976 123092006 -32538114 - ID_B1 SINE B4 -9 215 121 1 1524 358 255 206 0 chr4 123092069 123092171 -32537949 - ID_B1 SINE B4 -100 124 2 1 1524 1922 168 65 40 chr4 123092190 123092637 -32537483 - RMER4A LTR ERVK -8 458 1 1 1524 1187 62 0 0 chr4 123092657 123092801 -32537319 - B1_Mus1 SINE Alu 0 148 5 1 1524 231 61 0 0 chr4 123092989 123093022 -32537098 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1524 255 79 0 0 chr4 123093985 123094023 -32536097 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 1524 675 210 170 37 chr4 123094023 123094211 -32535909 - ID_B1 SINE B4 -10 214 2 1 1524 329 252 43 43 chr4 123094282 123094398 -32535722 - PB1D10 SINE Alu 0 117 2 1 1524 240 291 0 0 chr4 123094550 123094605 -32535515 + B1F SINE Alu 1 55 -94 1 1524 1145 48 0 27 chr4 123094606 123094756 -32535364 + B1_Mus2 SINE Alu 2 147 0 1 1524 438 36 0 0 chr4 123094875 123094931 -32535189 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1524 468 0 0 0 chr4 123095070 123095122 -32534998 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 1 1524 408 99 0 0 chr4 123095624 123095695 -32534425 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1524 807 308 4 57 chr4 123095724 123095986 -32534134 - B4A SINE B4 -44 248 1 1 1524 333 0 0 0 chr4 123096171 123096208 -32533912 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1524 245 253 12 37 chr4 123096299 123096381 -32533739 - ID4 SINE ID -3 80 1 1 1524 564 262 48 0 chr4 123096462 123096588 -32533532 + RSINE1 SINE B4 3 134 -31 1 1524 201 161 0 0 chr4 123096624 123096655 -32533465 + polypurine Low_complexity Low_complexity 1 31 0 1 1524 387 141 0 0 chr4 123096656 123096720 -32533400 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1524 192 152 0 0 chr4 123097555 123097588 -32532532 + CT-rich Low_complexity Low_complexity 4 36 0 2 1524 1052 121 54 16 chr4 123097601 123097786 -32532334 + B2_Mm2 SINE B2 3 194 -1 2 1524 575 250 50 25 chr4 123097872 123098032 -32532088 - ID_B1 SINE B4 -26 198 35 2 1524 1267 27 0 0 chr4 123098181 123098328 -32531792 - B1_Mm SINE Alu 0 147 1 2 1524 264 297 75 21 chr4 123098396 123098489 -32531631 + RSINE1 SINE B4 68 165 0 2 1524 556 244 29 29 chr4 123098533 123098672 -32531448 + B1_Mur2 SINE Alu 4 142 -7 2 1524 249 108 0 0 chr4 123098731 123098768 -32531352 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 2 1524 797 218 0 7 chr4 123098768 123098916 -32531204 - B1_Mur2 SINE Alu 0 149 3 2 1524 190 324 42 14 chr4 123099027 123099099 -32531021 - MIRc SINE MIR -159 109 36 2 1524 379 283 10 0 chr4 123099428 123099527 -32530593 - PB1D10 SINE Alu -8 109 10 2 1524 516 226 134 13 chr4 123100873 123101030 -32529090 - B3A SINE B2 -22 176 1 2 1524 762 159 0 57 chr4 123101090 123101230 -32528890 - B1_Mur3 SINE Alu -17 132 1 2 1524 431 271 19 0 chr4 123101605 123101712 -32528408 - PB1 SINE Alu -18 109 1 2 1524 719 138 18 0 chr4 123102216 123102325 -32527795 - PB1D9 SINE Alu -9 111 1 2 1524 1290 62 84 6 chr4 123102373 123102551 -32527569 - B2_Mm2 SINE B2 -2 193 2 2 1524 1195 128 118 94 chr4 123102556 123102885 -32527235 - Lx9 LINE L1 -2 7642 7306 2 1524 540 304 63 14 chr4 123103440 123103647 -32526473 + MER20 DNA MER1_type 1 217 -2 2 1524 210 150 0 0 chr4 123103701 123103741 -32526379 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1524 586 62 0 0 chr4 123103911 123103991 -32526129 - B1_Mus2 SINE Alu -67 80 1 2 1524 941 146 100 40 chr4 123104349 123104549 -32525571 + URR1A DNA MER1_type 1 212 -14 2 1524 370 236 86 8 chr4 123104594 123104722 -32525398 + ID_B1 SINE B4 1 138 -86 2 1524 252 0 0 0 chr4 123105806 123105834 -32524286 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 1524 1260 171 9 5 chr4 123106201 123106424 -32523696 + URR1B DNA MER1_type 1 224 -1 2 1524 454 213 247 0 chr4 123106551 123106701 -32523419 - MER2 DNA MER2_type -23 322 136 2 1524 270 56 0 0 chr4 123107108 123107144 -32522976 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1524 216 224 61 0 chr4 123107773 123107822 -32522298 + ID2 SINE ID 3 54 -29 2 1524 258 276 127 24 chr4 123108732 123108858 -32521262 - Charlie16a DNA MER1_type -44 298 160 2 1524 871 138 272 12 chr4 123110932 123111101 -32519019 + B3 SINE B2 1 213 -3 2 1524 634 194 26 65 chr4 123111207 123111361 -32518759 + B1_Mur3 SINE Alu 2 149 0 2 1524 615 247 70 81 chr4 123111400 123111585 -32518535 + B3 SINE B2 6 188 -7 2 1524 385 263 29 29 chr4 123112600 123112702 -32517418 + RSINE1 SINE B4 3 104 -61 2 1524 28 29 0 0 chr4 123112711 123112746 -32517374 + AT_rich Low_complexity Low_complexity 1 35 0 2 1524 1411 64 46 0 chr4 123113653 123113826 -32516294 - B2_Mm2 SINE B2 -14 181 1 2 1524 306 232 18 0 chr4 123113828 123113884 -32516236 + RSINE1 SINE B4 93 149 -16 2 1524 311 299 72 36 chr4 123114198 123114320 -32515800 + Charlie1a DNA MER1_type 2 128 -1327 2 1524 594 271 0 59 chr4 123114320 123114473 -32515647 + B1F SINE Alu 4 147 -2 2 1524 1172 80 106 28 chr4 123114474 123114506 -32515614 - B2_Mm2 SINE B2 -2 193 160 2 1524 402 21 0 0 chr4 123114506 123114553 -32515567 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2 1524 1172 80 106 28 chr4 123114553 123114699 -32515421 - B2_Mm2 SINE B2 -36 159 1 2 1524 32 26 0 0 chr4 123114798 123114837 -32515283 + AT_rich Low_complexity Low_complexity 1 39 0 2 1524 186 105 17 50 chr4 123114951 123114989 -32515131 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1524 1084 212 43 10 chr4 123114989 123115198 -32514922 + B3 SINE B2 1 216 0 2 1524 186 105 17 50 chr4 123115198 123115219 -32514901 + (CAAA)n Simple_repeat Simple_repeat 4 22 0 2 1524 28 61 0 0 chr4 123115992 123116041 -32514079 + AT_rich Low_complexity Low_complexity 1 49 0 2 1524 371 247 0 0 chr4 123116144 123116221 -32513899 - PB1D9 SINE Alu -43 77 1 2 1524 802 165 297 6 chr4 123116473 123116638 -32513482 - B3 SINE B2 -2 214 2 2 1524 606 233 145 0 chr4 123117216 123117388 -32512732 - B3 SINE B2 -19 197 1 2 1524 341 295 42 51 chr4 123118434 123118552 -32511568 - PB1D10 SINE Alu 0 117 1 2 1524 477 0 0 0 chr4 123119594 123119647 -32510473 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1524 530 275 33 0 chr4 123119647 123119767 -32510353 - RSINE1 SINE B4 -41 124 1 2 1524 22 56 0 0 chr4 123119789 123119825 -32510295 + AT_rich Low_complexity Low_complexity 1 36 0 2 1524 1294 77 6 0 chr4 123119866 123120036 -32510084 - B2_Mm2 SINE B2 -24 171 1 2 1524 550 214 357 0 chr4 123120055 123120209 -32509911 - B3 SINE B2 -5 211 3 2 1524 421 17 35 0 chr4 123120233 123120291 -32509829 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1524 443 279 61 76 chr4 123120308 123120440 -32509680 - ID_B1 SINE B4 -14 210 81 2 1524 284 220 11 109 chr4 123120442 123120534 -32509586 - RLTR25A LTR ERVK -499 604 522 2 1524 648 205 94 0 chr4 123120452 123120569 -32509551 - B1_Mus1 SINE Alu -20 128 1 2 1524 390 280 48 56 chr4 123120459 123120584 -32509536 - MT2B LTR ERVL -325 276 153 2 1524 585 182 125 29 chr4 123120602 123120738 -32509382 + B1F2 SINE Alu 1 149 0 2 1524 398 246 70 28 chr4 123120760 123120902 -32509218 - B1_Mus1 SINE Alu 0 148 1 2 1524 881 224 24 14 chr4 123120902 123121115 -32509005 + RCHARR1 DNA MER1_type 528 742 -232 2 1524 726 200 92 0 chr4 123121206 123121336 -32508784 + B1_Mur4 SINE Alu 2 143 -7 2 1524 30 0 0 0 chr4 123121532 123121562 -32508558 + AT_rich Low_complexity Low_complexity 1 30 0 2 1524 1017 208 83 0 chr4 123122279 123122471 -32507649 - B3 SINE B2 -5 211 4 2 1524 627 260 0 8 chr4 123122508 123122636 -32507484 + B1F2 SINE Alu 3 129 -20 2 1524 817 50 72 0 chr4 123122654 123122793 -32507327 + (GGGA)n Simple_repeat Simple_repeat 4 152 0 2 1524 351 65 0 0 chr4 123122795 123122841 -32507279 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 2 1524 1117 84 26 0 chr4 123122899 123123053 -32507067 + B2_Mm2 SINE B2 1 158 -37 2 1524 243 0 0 0 chr4 123123054 123123081 -32507039 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1524 253 237 0 0 chr4 123123908 123123967 -32506153 + A-rich Low_complexity Low_complexity 1 59 0 2 1524 1175 89 0 0 chr4 123124823 123124969 -32505151 - B1_Mus1 SINE Alu -2 146 1 2 1524 639 276 74 0 chr4 123125870 123126033 -32504087 + B3 SINE B2 2 176 -40 2 1524 186 71 0 0 chr4 123126063 123126091 -32504029 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1524 555 262 31 75 chr4 123126310 123126471 -32503649 - ID_B1 SINE B4 -3 221 68 2 1524 625 195 283 0 chr4 123126704 123126863 -32503257 - B3 SINE B2 -11 205 2 2 1524 317 270 174 108 chr4 123127477 123127672 -32502448 - B4 SINE B4 -1 291 84 2 1524 298 314 189 17 chr4 123127770 123128003 -32502117 + L1MC4 LINE L1 6740 7012 -1030 2 1524 1209 236 91 31 chr4 123128259 123128578 -32501542 + ORR1D2 LTR MaLR 21 358 -12 2 1524 320 253 51 0 chr4 123128585 123128664 -32501456 + RSINE1 SINE B4 44 126 -39 2 1524 339 308 52 8 chr4 123128703 123128837 -32501283 + L1M5 LINE L1 5500 5639 -555 2 1524 370 323 62 23 chr4 123128849 123128979 -32501141 + MLT1I LTR MaLR 2 136 -275 2 1524 401 247 12 36 chr4 123129820 123129904 -32500216 - ID4_ SINE ID -1 82 1 2 1524 468 283 79 9 chr4 123130339 123130453 -32499667 + B1F1 SINE Alu 1 122 -27 2 1524 725 176 15 19 chr4 123130471 123130618 -32499502 + B1_Mur2 SINE Alu 7 149 0 2 1524 28 29 0 0 chr4 123130653 123130688 -32499432 + AT_rich Low_complexity Low_complexity 1 35 0 2 1524 1139 226 154 21 chr4 123130974 123131304 -32498816 + ORR1D1 LTR MaLR 1 374 0 2 1524 327 250 169 0 chr4 123131400 123131536 -32498584 - L1MA8 LINE L1 -35 6256 6098 2 1524 456 255 27 125 chr4 123131811 123131995 -32498125 - RLTR20C LTR ERVK 0 534 369 2 1524 600 160 24 63 chr4 123131986 123132113 -32498007 - RLTR20D LTR ERVK -446 122 1 2 1524 192 43 19 96 chr4 123132383 123132435 -32497685 + A-rich Low_complexity Low_complexity 2 49 0 2 1524 414 0 0 0 chr4 123132537 123132583 -32497537 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1524 492 95 0 0 chr4 123134192 123134229 -32495891 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1524 315 0 0 0 chr4 123134229 123134264 -32495856 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1524 492 95 0 0 chr4 123134264 123134304 -32495816 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1524 582 86 0 0 chr4 123134304 123134385 -32495735 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1524 702 292 66 44 chr4 123134522 123134794 -32495326 - B4 SINE B4 -10 282 5 2 1524 184 265 119 12 chr4 123134893 123134977 -32495143 - L2 LINE L2 -1293 2126 2034 2 1524 877 179 73 0 chr4 123135960 123136111 -32494009 - B2_Mm2 SINE B2 -33 162 1 2 1524 485 125 25 0 chr4 123136850 123136930 -32493190 - B1_Mus2 SINE Alu -1 146 65 2 1524 541 244 122 0 chr4 123137131 123137254 -32492866 + B1_Mur1 SINE Alu 6 143 -6 2 1524 555 235 43 124 chr4 123137267 123137500 -32492620 + B3 SINE B2 3 216 0 2 1524 758 325 87 14 chr4 123137502 123137849 -32492271 + MER44B DNA MER2_type 155 526 -24 2 1524 242 309 106 64 chr4 123137908 123138149 -32491971 + L2c LINE L2 2887 3133 -242 3 1524 248 376 52 15 chr4 123138169 123138304 -32491816 + L2c LINE L2 3246 3385 -2 3 1524 314 280 125 42 chr4 123140116 123140284 -32489836 + B4A SINE B4 39 220 -72 3 1524 568 223 108 0 chr4 123140159 123140289 -32489831 + B1_Mur1 SINE Alu 6 149 0 3 1524 229 330 55 36 chr4 123141283 123141393 -32488727 - BC1_Mm scRNA scRNA -40 112 1 3 1524 545 259 35 14 chr4 123141393 123141538 -32488582 - B1F SINE Alu 0 149 2 3 1524 779 156 175 0 chr4 123141592 123141752 -32488368 + B3 SINE B2 4 191 -25 3 1524 360 199 121 126 chr4 123141864 123142054 -32488066 + B2_Mm2 SINE B2 1 189 -6 3 1524 771 101 92 0 chr4 123142094 123142213 -32487907 - B1_Mm SINE Alu 0 147 18 3 1524 348 226 9 113 chr4 123142118 123142233 -32487887 - MT2B LTR ERVL -337 264 162 3 1524 813 234 39 74 chr4 123142842 123143045 -32487075 + B3A SINE B2 2 197 -1 3 1524 262 236 14 14 chr4 123144368 123144448 -32485672 + B4A SINE B4 2 81 -211 3 1524 4064 27 2 0 chr4 123144856 123145301 -32484819 + L1Md_A LINE L1 6136 6581 -1 3 1524 234 108 0 0 chr4 123145301 123145338 -32484782 + MusHAL1 LINE L1 351 387 -2325 3 1524 451 344 0 22 chr4 123145347 123145481 -32484639 - B4 SINE B4 -79 213 83 3 1524 400 309 94 14 chr4 123145477 123145615 -32484505 - B1F2 SINE Alu 0 149 1 3 1524 225 289 60 12 chr4 123145668 123145752 -32484368 + B2_Mm2 SINE B2 1 88 -107 3 1524 399 73 0 0 chr4 123145949 123146004 -32484116 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 3 1524 337 282 0 40 chr4 123146004 123146078 -32484042 - RSINE1 SINE B4 -90 75 5 3 1524 301 310 115 65 chr4 123146292 123146492 -32483628 - HAL1 LINE L1 -1952 555 346 3 1524 29 0 0 0 chr4 123146595 123146624 -32483496 + AT_rich Low_complexity Low_complexity 1 29 0 3 1524 309 26 0 0 chr4 123146624 123146662 -32483458 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1524 257 163 23 0 chr4 123146664 123146707 -32483413 - PB1D7 SINE Alu -74 46 3 3 1524 236 136 0 102 chr4 123147641 123147690 -32482430 + ID2 SINE ID 2 45 -38 3 1524 762 180 0 0 chr4 123147768 123147890 -32482230 - B1_Mus2 SINE Alu 0 147 26 3 1524 264 59 0 0 chr4 123147993 123148027 -32482093 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1524 495 279 62 28 chr4 123148042 123148186 -32481934 + B1F1 SINE Alu 1 149 0 3 1524 410 213 19 130 chr4 123153945 123154053 -32476067 - RSINE1 SINE B4 -1 164 69 3 1524 202 279 148 37 chr4 123154368 123154403 -32475717 - MIR SINE MIR -77 185 151 3 1524 1437 90 5 5 chr4 123154403 123154592 -32475528 + B2_Mm2 SINE B2 3 191 -4 3 1524 202 279 148 37 chr4 123154592 123154664 -32475456 - MIR SINE MIR -112 150 66 3 1524 319 330 0 0 chr4 123154729 123154820 -32475300 + MamRep137 DNA TcMar? 2 92 -352 3 1524 697 191 20 34 chr4 123154950 123155096 -32475024 - B1_Mur2 SINE Alu -1 148 5 3 1524 273 245 0 0 chr4 123155695 123155744 -32474376 + B1_Mus2 SINE Alu 57 105 -42 3 1524 590 0 14 0 chr4 123155761 123155831 -32474289 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 3 1524 323 242 40 40 chr4 123158078 123158177 -32471943 - PB1D10 SINE Alu -2 115 17 3 1524 1252 48 0 14 chr4 123158890 123159038 -32471082 + B1_Mus1 SINE Alu 2 147 -1 3 1524 583 158 93 86 chr4 123159839 123159978 -32470142 - B1_Mur1 SINE Alu 0 149 10 3 1524 249 328 138 39 chr4 123159891 123160021 -32470099 - B4 SINE B4 -94 198 56 3 1524 1810 16 0 0 chr4 123160064 123160254 -32469866 + B2_Mm1a SINE B2 2 191 -2 3 1524 499 303 45 6 chr4 123160271 123160427 -32469693 - RSINE1 SINE B4 -2 163 2 3 1524 212 0 36 0 chr4 123160565 123160593 -32469527 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1524 1355 101 26 5 chr4 123160674 123160863 -32469257 + B2_Mm2 SINE B2 3 195 0 3 1524 25 0 0 0 chr4 123161861 123161886 -32468234 + AT_rich Low_complexity Low_complexity 1 25 0 3 1524 1542 226 40 38 chr4 123162022 123162324 -32467796 + ORR1D1 LTR MaLR 1 313 -61 3 1524 1727 47 0 0 chr4 123162324 123162517 -32467603 - B2_Mm1t SINE B2 0 193 1 3 1524 1542 226 40 38 chr4 123162517 123162587 -32467533 + ORR1D1 LTR MaLR 314 374 0 3 1524 779 253 58 22 chr4 123162765 123162991 -32467129 + ORR1E LTR MaLR 5 238 -121 3 1524 456 181 233 0 chr4 123163072 123163188 -32466932 - MER82 DNA MER2_type -441 212 70 3 1524 770 141 125 0 chr4 123163386 123163514 -32466606 - B1_Mur3 SINE Alu -3 146 3 3 1524 317 129 105 12 chr4 123163791 123163877 -32466243 - Lx5 LINE L1 0 7050 6957 3 1524 407 318 6 117 chr4 123164231 123164402 -32465718 - ID_B1 SINE B4 -6 218 67 3 1524 207 0 0 0 chr4 123164482 123164505 -32465615 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1524 267 59 0 0 chr4 123164506 123164540 -32465580 - B1_Mm SINE Alu -10 137 104 3 1524 1207 41 0 27 chr4 123164599 123164748 -32465372 - B1_Mus2 SINE Alu -2 145 1 3 1524 198 378 0 13 chr4 123164860 123164935 -32465185 - MIR3 SINE MIR -53 155 82 3 1524 907 178 0 0 chr4 123165109 123165244 -32464876 - B1_Mus1 SINE Alu -13 135 1 3 1524 313 318 133 16 chr4 123165320 123165448 -32464672 - MER5A1 DNA MER1_type -4 162 20 3 1524 287 378 20 49 chr4 123165705 123165729 -32464391 - MIR SINE MIR -19 243 221 3 1524 487 245 137 30 chr4 123165729 123165897 -32464223 - MER5A DNA MER1_type -1 188 3 3 1524 287 378 20 49 chr4 123165897 123166117 -32464003 - MIR SINE MIR -42 220 6 3 1524 646 240 15 52 chr4 123167473 123167609 -32462511 + 7SK RNA RNA 1 131 -200 3 1524 353 297 94 25 chr4 123168226 123168385 -32461735 + MIRb SINE MIR 59 228 -40 3 1524 591 34 114 0 chr4 123168622 123168710 -32461410 + L1Md_F2 LINE L1 6482 6579 -3 3 1524 188 164 0 52 chr4 123168719 123168764 -32461356 + A-rich Low_complexity Low_complexity 1 43 0 3 1524 1274 34 7 0 chr4 123168764 123168910 -32461210 + B1_Mm SINE Alu 1 147 0 3 1524 188 164 0 52 chr4 123168910 123168922 -32461198 + A-rich Low_complexity Low_complexity 44 55 0 3 1524 586 212 5 38 chr4 123169113 123169244 -32460876 - B1_Mus1 SINE Alu 0 149 13 3 1524 1132 107 71 0 chr4 123170686 123170854 -32459266 + B2_Mm1t SINE B2 1 180 -13 3 1524 284 182 0 52 chr4 123170885 123170943 -32459177 + B2_Mm2 SINE B2 47 101 -94 3 1524 24 0 0 0 chr4 123170965 123170989 -32459131 + AT_rich Low_complexity Low_complexity 1 24 0 3 1524 429 20 0 0 chr4 123171111 123171161 -32458959 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 3 1524 471 267 48 0 chr4 123171476 123171581 -32458539 + PB1D9 SINE Alu 2 111 -9 3 1524 347 322 22 0 chr4 123171731 123171821 -32458299 - PB1D10 SINE Alu -16 101 10 3 1524 281 357 51 16 chr4 123173570 123173853 -32456267 + HAL1 LINE L1 1674 1967 -540 3 1524 366 23 0 0 chr4 123173853 123173896 -32456224 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 3 1524 281 357 51 16 chr4 123173896 123173985 -32456135 + HAL1 LINE L1 1968 2058 -449 3 1524 241 145 0 95 chr4 123174018 123174080 -32456040 - L2c LINE L2 -1 3425 3341 3 1524 4057 133 62 76 chr4 123174092 123174855 -32455265 + RMER6A LTR ERVK 1 752 -4 3 1524 2007 99 9 62 chr4 123175237 123175560 -32454560 + ORR1A2 LTR MaLR 22 327 0 3 1524 456 295 37 44 chr4 123175561 123175696 -32454424 + RSINE1 SINE B4 19 152 -13 3 1524 529 346 96 12 chr4 123175778 123176018 -32454102 + B4A SINE B4 26 285 -7 3 1524 309 284 0 0 chr4 123176173 123176275 -32453845 + GA-rich Low_complexity Low_complexity 2 103 0 3 1524 350 181 42 0 chr4 123176611 123176683 -32453437 - B1F1 SINE Alu -53 96 22 3 1524 518 182 9 0 chr4 123176962 123177072 -32453048 + CT-rich Low_complexity Low_complexity 3 113 0 3 1524 213 196 0 0 chr4 123178588 123178634 -32451486 + A-rich Low_complexity Low_complexity 1 46 0 3 1524 228 311 0 47 chr4 123178649 123178713 -32451407 + ID4 SINE ID 19 79 -4 3 1524 189 0 0 0 chr4 123180208 123180229 -32449891 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 1524 346 264 42 12 chr4 123180229 123180249 -32449871 - PB1D10 SINE Alu -12 108 50 3 1524 354 213 0 0 chr4 123180249 123180310 -32449810 - ID_B1 SINE B4 -60 164 104 3 1524 346 264 42 12 chr4 123180310 123180321 -32449799 - PB1D10 SINE Alu -12 49 11 3 1524 324 70 0 0 chr4 123180374 123180417 -32449703 + (CCA)n Simple_repeat Simple_repeat 1 43 0 3 1524 183 42 0 0 chr4 123180762 123180786 -32449334 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 3 1524 1104 178 96 5 chr4 123180849 123181047 -32449073 + B3 SINE B2 1 216 0 3 1524 1743 16 0 15 chr4 123181190 123181385 -32448735 + B2_Mm1a SINE B2 2 193 0 3 1524 1321 41 0 0 chr4 123181407 123181554 -32448566 + B1_Mus2 SINE Alu 1 147 0 3 1524 243 0 0 0 chr4 123181554 123181581 -32448539 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1524 833 154 320 0 chr4 123182560 123182716 -32447404 + B3 SINE B2 4 209 -7 3 1524 216 182 36 18 chr4 123182744 123182800 -32447320 + GA-rich Low_complexity Low_complexity 1 57 0 3 1524 368 290 117 55 chr4 123182900 123183136 -32446984 - MIRb SINE MIR -5 263 3 3 1524 1084 146 172 0 chr4 123183300 123183492 -32446628 - URR1B DNA MER1_type 0 225 1 3 1524 243 309 23 69 chr4 123183830 123183844 -32446276 - ID_B1 SINE B4 -130 94 12 3 1524 275 279 14 68 chr4 123183844 123183917 -32446203 - ID4 SINE ID -3 80 12 3 1524 333 0 0 0 chr4 123185207 123185244 -32444876 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1524 668 179 0 100 chr4 123185284 123185414 -32444706 - B3A SINE B2 -81 117 1 3 1524 406 269 36 18 chr4 123185832 123185942 -32444178 + PB1D10 SINE Alu 6 117 0 3 1524 653 179 18 9 chr4 123186121 123186234 -32443886 + PB1D9 SINE Alu 5 118 -2 4 1524 302 247 163 12 chr4 123186378 123186464 -32443656 - PB1D10 SINE Alu 0 117 19 4 1524 477 196 168 0 chr4 123186780 123186887 -32443233 + PB1D10 SINE Alu 1 125 -24 4 1524 228 185 35 53 chr4 123189630 123189687 -32440433 + PB1D7 SINE Alu 3 58 -62 4 1524 195 307 119 21 chr4 123190608 123190751 -32439369 + L2a LINE L2 2948 3104 -322 4 1524 186 262 99 12 chr4 123190861 123190942 -32439178 + L2a LINE L2 3295 3382 -44 4 1524 1495 75 27 0 chr4 123191686 123191874 -32438246 + B2_Mm2 SINE B2 2 194 -1 4 1524 637 235 15 29 chr4 123192262 123192398 -32437722 - B1_Mus1 SINE Alu -10 138 5 4 1524 302 179 59 15 chr4 123192651 123192719 -32437401 + MIRb SINE MIR 127 197 -71 4 1524 23 33 0 0 chr4 123192862 123192892 -32437228 + AT_rich Low_complexity Low_complexity 1 30 0 4 1524 583 277 0 0 chr4 123193517 123193647 -32436473 + B1F1 SINE Alu 13 142 -7 4 1524 332 200 200 0 chr4 123194481 123194556 -32435564 - B3 SINE B2 -26 190 101 4 1524 493 279 202 25 chr4 123195459 123195702 -32434418 + B4A SINE B4 2 287 -5 4 1524 2263 195 34 26 chr4 123195820 123196289 -32433831 - Lx5 LINE L1 0 7050 6578 4 1524 250 320 87 32 chr4 123196316 123196442 -32433678 - Kanga2_a DNA Tc2 -340 548 416 4 1524 465 255 0 30 chr4 123196514 123196615 -32433505 + RSINE1 SINE B4 5 102 -63 4 1524 432 213 63 11 chr4 123196631 123196726 -32433394 - B4 SINE B4 -191 101 2 4 1524 247 196 0 0 chr4 123196828 123196884 -32433236 + T-rich Low_complexity Low_complexity 1 56 0 4 1524 420 269 418 0 chr4 123196884 123197042 -32433078 - B4A SINE B4 -68 224 1 4 1524 219 139 0 0 chr4 123197061 123197097 -32433023 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 4 1524 301 206 129 29 chr4 123197124 123197194 -32432926 - RSINE1 SINE B4 -78 87 11 4 1524 897 10 0 0 chr4 123197257 123197359 -32432761 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 4 1524 586 126 0 50 chr4 123197369 123197382 -32432738 - B1_Mm SINE Alu 0 147 137 4 1524 1141 64 43 0 chr4 123197382 123197523 -32432597 - B1_Mus2 SINE Alu 0 147 1 4 1524 1145 109 103 0 chr4 123197523 123197697 -32432423 - B2_Mm2 SINE B2 -1 194 2 4 1524 586 126 0 50 chr4 123197697 123197782 -32432338 - B1_Mm SINE Alu -11 136 54 4 1524 1079 67 82 0 chr4 123198314 123198448 -32431672 + B1_Mm SINE Alu 1 145 -2 4 1524 594 0 0 0 chr4 123198449 123198515 -32431605 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1524 378 0 0 0 chr4 123199186 123199228 -32430892 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1524 318 244 275 30 chr4 123199348 123199479 -32430641 - MIR SINE MIR -66 196 34 4 1524 327 262 112 43 chr4 123199597 123199738 -32430382 - L1MC5 LINE L1 -50 7911 7757 4 1524 243 0 0 0 chr4 123199738 123199765 -32430355 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1524 327 262 112 43 chr4 123199765 123199810 -32430310 - L1MC5 LINE L1 -205 7756 7713 4 1524 503 265 53 8 chr4 123199911 123200044 -32430076 - ID_B1 SINE B4 -5 219 81 4 1524 930 134 0 0 chr4 123201638 123201780 -32428340 + B1_Mur3 SINE Alu 8 149 0 4 1524 613 248 74 20 chr4 123202099 123202247 -32427873 - RSINE1 SINE B4 -6 159 4 4 1524 680 297 14 37 chr4 123202276 123202493 -32427627 - ID_B1 SINE B4 -11 213 2 4 1524 210 241 0 33 chr4 123202997 123203057 -32427063 + C-rich Low_complexity Low_complexity 2 59 0 4 1524 218 250 0 0 chr4 123204840 123204888 -32425232 + CT-rich Low_complexity Low_complexity 1 48 0 4 1524 337 233 11 22 chr4 123205089 123205181 -32424939 + GA-rich Low_complexity Low_complexity 6 96 0 4 1524 427 245 19 38 chr4 123205896 123206002 -32424118 + PB1D7 SINE Alu 13 116 -4 4 1524 307 298 0 25 chr4 123206364 123206455 -32423665 - ID4 SINE ID -58 94 6 4 1524 386 293 28 63 chr4 123207131 123207273 -32422847 + MIRb SINE MIR 104 240 -28 4 1525 342 115 0 0 chr4 123207690 123207742 -32422378 + (GGA)n Simple_repeat Simple_repeat 3 54 0 4 1525 260 130 56 0 chr4 123207766 123207820 -32422300 + PB1D10 SINE Alu 42 98 -19 4 1525 32 26 0 0 chr4 123207981 123208020 -32422100 + AT_rich Low_complexity Low_complexity 1 39 0 4 1525 273 331 113 24 chr4 123208086 123208210 -32421910 - L2c LINE L2 0 3387 3253 4 1525 292 252 93 108 chr4 123208314 123208443 -32421677 + RSINE1 SINE B4 3 129 -36 4 1525 1081 73 0 22 chr4 123208464 123208603 -32421517 + B1_Mus2 SINE Alu 1 136 -11 4 1525 236 53 26 0 chr4 123208603 123208641 -32421479 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 4 1525 1348 95 10 36 chr4 123209335 123209531 -32420589 + B2_Mm1t SINE B2 3 193 0 4 1525 447 297 81 20 chr4 123209880 123210070 -32420050 + Lx7 LINE L1 7121 7321 -152 4 1525 1463 73 6 0 chr4 123210282 123210461 -32419659 + B2_Mm1t SINE B2 2 181 -12 4 1525 417 297 113 28 chr4 123210488 123210630 -32419490 + RSINE1 SINE B4 9 162 -3 4 1525 302 276 91 51 chr4 123210661 123210837 -32419283 + L1MB8 LINE L1 5705 5887 -291 4 1525 715 206 7 29 chr4 123210948 123211088 -32419032 + B1_Mur2 SINE Alu 2 138 -11 4 1525 295 281 31 0 chr4 123211090 123211186 -32418934 + GA-rich Low_complexity Low_complexity 2 100 0 4 1525 311 290 124 16 chr4 123211440 123211689 -32418431 + L1MC5 LINE L1 7618 7893 -68 4 1525 974 160 142 11 chr4 123211729 123211912 -32418208 + B3 SINE B2 4 210 -6 4 1525 453 85 575 0 chr4 123212351 123212445 -32417675 + B1_Mus1 SINE Alu 1 148 0 4 1525 908 278 118 38 chr4 123213667 123214163 -32415957 - L1ME1 LINE L1 -1718 6067 5531 4 1525 1424 72 22 11 chr4 123214311 123214495 -32415625 + B2_Mm2 SINE B2 1 186 -9 4 1525 1221 68 7 0 chr4 123214572 123214718 -32415402 + B1_Mus2 SINE Alu 1 147 0 4 1525 573 156 79 32 chr4 123214824 123214945 -32415175 - B1_Mur4 SINE Alu -3 147 16 4 1525 366 123 0 0 chr4 123214950 123215007 -32415113 + (TTCA)n Simple_repeat Simple_repeat 2 58 0 4 1525 362 195 500 15 chr4 123215007 123215134 -32414986 - B3 SINE B2 -20 196 8 4 1525 234 247 273 0 chr4 123215996 123216073 -32414047 - PB1D10 SINE Alu -19 98 1 4 1525 647 262 57 0 chr4 123216372 123216513 -32413607 + B1_Mur1 SINE Alu 1 149 0 4 1525 886 51 51 0 chr4 123216524 123216641 -32413479 + B1_Mus2 SINE Alu 12 134 -13 4 1525 307 270 27 0 chr4 123216679 123216753 -32413367 + ID4_ SINE ID 5 80 -3 4 1525 1396 70 37 21 chr4 123217465 123217656 -32412464 + B2_Mm2 SINE B2 1 194 -1 4 1525 1653 16 0 85 chr4 123217957 123218168 -32411952 + B2_Mm1t SINE B2 1 193 0 4 1525 249 33 0 0 chr4 123218210 123218240 -32411880 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1525 1789 21 0 0 chr4 123218249 123218440 -32411680 + B2_Mm1t SINE B2 2 192 -1 4 1525 218 232 40 68 chr4 123220360 123220434 -32409686 + B4A SINE B4 12 83 -209 4 1525 877 145 34 34 chr4 123220369 123220547 -32409573 + B2_Mm2 SINE B2 18 195 0 4 1525 1186 63 14 14 chr4 123220653 123220798 -32409322 - B1_Mus2 SINE Alu -1 146 2 4 1525 1507 60 11 16 chr4 123222197 123222384 -32407736 + B2_Mm2 SINE B2 2 187 -8 4 1525 321 227 214 10 chr4 123223288 123223386 -32406734 + PB1D7 SINE Alu 1 118 -2 4 1525 328 317 0 0 chr4 123223394 123223476 -32406644 + B4 SINE B4 1 82 -210 4 1525 503 161 0 0 chr4 123223641 123223722 -32406398 + ID SINE ID 2 82 -142 4 1525 279 293 20 20 chr4 123223733 123223834 -32406286 - MER63D DNA AcHobo -652 409 309 4 1525 327 265 59 0 chr4 123223846 123223982 -32406138 - MER63D DNA AcHobo -902 159 16 4 1525 541 247 86 33 chr4 123224571 123224722 -32405398 - RSINE1 SINE B4 0 165 7 4 1525 184 30 29 29 chr4 123224723 123224757 -32405363 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 4 1525 1120 63 7 0 chr4 123224760 123224902 -32405218 - B1_Mus2 SINE Alu 0 147 5 4 1525 233 267 33 0 chr4 123225081 123225141 -32404979 + ID4_ SINE ID 1 62 -21 4 1525 485 268 39 79 chr4 123225171 123225349 -32404771 + B3A SINE B2 22 192 -6 4 1525 292 249 30 4 chr4 123225443 123225545 -32404575 + B1F2 SINE Alu 4 111 -6 4 1525 1138 82 7 0 chr4 123226474 123226620 -32403500 + B1_Mus1 SINE Alu 2 148 0 4 1525 411 145 0 0 chr4 123226707 123226776 -32403344 + (ATGGTG)n Simple_repeat Simple_repeat 4 72 0 4 1525 215 79 79 0 chr4 123227080 123227118 -32403002 + PB1D7 SINE Alu 73 113 -7 4 1525 211 224 0 39 chr4 123227136 123227187 -32402933 + GA-rich Low_complexity Low_complexity 3 51 0 4 1525 254 273 50 0 chr4 123227214 123227313 -32402807 - LTR90B LTR LTR -22 774 671 4 1525 1562 171 27 133 chr4 123227313 123227757 -32402363 + RMER10B LTR ERVL 1 397 -1 4 1525 373 257 89 0 chr4 123227784 123227885 -32402235 - PB1D7 SINE Alu -8 112 3 4 1525 198 0 0 0 chr4 123228351 123228373 -32401747 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1525 238 349 0 23 chr4 123228720 123228808 -32401312 + MIR SINE MIR 66 151 -57 4 1525 344 22 22 0 chr4 123228994 123229039 -32401081 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1525 1008 217 87 92 chr4 123229501 123229871 -32400249 + MTE2a LTR MaLR 5 372 -7 4 1525 291 350 53 26 chr4 123230332 123230558 -32399562 + MIRb SINE MIR 16 252 -16 4 1525 355 329 180 5 chr4 123231323 123231534 -32398586 + B4A SINE B4 43 290 -2 4 1525 243 0 0 0 chr4 123232656 123232683 -32397437 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 1525 762 202 59 119 chr4 123232879 123233115 -32397005 + ID_B1 SINE B4 2 223 -1 4 1525 1457 67 0 49 chr4 123234276 123234480 -32395640 + B2_Mm2 SINE B2 2 195 0 5 1525 650 242 201 6 chr4 123234527 123234706 -32395414 + B3 SINE B2 1 214 -2 5 1525 1436 218 68 38 chr4 123234760 123235232 -32394888 - RCHARR1 DNA MER1_type -4 970 485 5 1525 479 202 0 0 chr4 123235241 123235320 -32394800 + B3 SINE B2 27 105 -111 5 1525 609 262 28 0 chr4 123235337 123235482 -32394638 + RSINE1 SINE B4 3 151 -14 5 1525 389 259 97 9 chr4 123235524 123235637 -32394483 + ID_B1 SINE B4 94 216 -8 5 1525 754 175 108 5 chr4 123235656 123235851 -32394269 - RCHARR1 DNA MER1_type -492 482 268 5 1525 928 205 24 28 chr4 123236079 123236290 -32393830 + B3 SINE B2 1 210 -6 5 1525 211 192 18 71 chr4 123237026 123237082 -32393038 + B1F1 SINE Alu 1 53 -96 5 1525 1091 68 0 0 chr4 123237083 123237230 -32392890 + B1_Mus2 SINE Alu 1 147 0 5 1525 297 197 30 0 chr4 123237240 123237306 -32392814 + PB1D10 SINE Alu 42 109 -8 5 1525 269 224 106 24 chr4 123237434 123237541 -32392579 - PB1D9 SINE Alu -6 114 1 5 1525 230 89 156 0 chr4 123237602 123237647 -32392473 - B1F SINE Alu -53 96 45 5 1525 212 278 122 0 chr4 123237662 123237752 -32392368 + L2 LINE L2 2077 2177 -1242 5 1525 1260 41 0 0 chr4 123237775 123237921 -32392199 - B1_Mm SINE Alu -1 146 1 5 1525 214 158 34 34 chr4 123238078 123238137 -32391983 + GA-rich Low_complexity Low_complexity 4 62 0 5 1525 617 238 155 24 chr4 123238201 123238369 -32391751 - B3A SINE B2 -8 190 1 5 1525 338 305 93 19 chr4 123238539 123238646 -32391474 + PB1D7 SINE Alu 6 120 0 5 1525 1240 41 0 0 chr4 123239207 123239354 -32390766 + B1_Mus2 SINE Alu 1 147 0 5 1525 233 364 118 28 chr4 123239768 123239912 -32390208 - MIRm SINE MIR -116 160 4 5 1525 1408 123 22 9 chr4 123239916 123240138 -32389982 + URR1B DNA MER1_type 1 225 0 5 1525 578 137 10 10 chr4 123240639 123240742 -32389378 + B1_Mus2 SINE Alu 45 147 0 5 1525 259 256 76 8 chr4 123240768 123240886 -32389234 - Charlie18a DNA MER1_type -117 225 100 5 1525 1176 36 7 0 chr4 123240896 123241034 -32389086 + B1_Mus1 SINE Alu 2 140 -8 5 1525 414 269 19 9 chr4 123243748 123243853 -32386267 + PB1D7 SINE Alu 6 111 -9 5 1525 207 0 0 0 chr4 123243920 123243943 -32386177 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1525 189 0 0 0 chr4 123244068 123244089 -32386031 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1525 3554 3 0 0 chr4 123244348 123244736 -32385384 + L1Md_A LINE L1 6195 6582 0 5 1525 571 149 19 0 chr4 123244837 123244944 -32385176 - B1_Mur1 SINE Alu -1 148 40 5 1525 229 278 27 14 chr4 123244948 123245021 -32385099 - B4 SINE B4 -210 82 9 5 1525 1337 199 137 15 chr4 123245744 123245868 -32384252 - ORR1C1 LTR MaLR 0 378 226 5 1525 252 0 0 0 chr4 123245868 123245896 -32384224 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 5 1525 1337 199 137 15 chr4 123245896 123246108 -32384012 - ORR1C1 LTR MaLR -153 225 1 5 1525 2076 103 83 0 chr4 123246198 123246500 -32383620 + ORR1A2 LTR MaLR 1 327 0 5 1525 515 171 0 0 chr4 123246650 123246732 -32383388 - B1_Mur2 SINE Alu -8 141 60 5 1525 481 165 19 58 chr4 123246749 123246852 -32383268 - B1_Mur2 SINE Alu 0 149 51 5 1525 243 315 152 0 chr4 123246888 123246980 -32383140 + PB1D10 SINE Alu 10 115 -2 5 1525 710 245 99 0 chr4 123247217 123247409 -32382711 + B3 SINE B2 1 211 -5 5 1525 221 241 37 0 chr4 123247750 123247804 -32382316 + B4A SINE B4 90 145 -147 5 1525 299 244 90 0 chr4 123247756 123247834 -32382286 + PB1D10 SINE Alu 12 96 -21 5 1525 25 31 0 0 chr4 123247841 123247873 -32382247 + AT_rich Low_complexity Low_complexity 1 32 0 5 1525 220 148 37 0 chr4 123249480 123249498 -32380622 + polypyrimidine Low_complexity Low_complexity 44 61 0 5 1525 1161 118 0 0 chr4 123249498 123249676 -32380444 + (TCTCCC)n Simple_repeat Simple_repeat 2 179 0 5 1525 220 148 37 0 chr4 123249676 123249711 -32380409 + polypyrimidine Low_complexity Low_complexity 7 43 0 5 1525 220 250 0 0 chr4 123250226 123250270 -32379850 + G-rich Low_complexity Low_complexity 5 48 0 5 1525 415 250 169 22 chr4 123250984 123251209 -32378911 + L1ME1 LINE L1 5657 5914 -265 5 1525 327 313 30 0 chr4 123251636 123251735 -32378385 + PB1D7 SINE Alu 1 102 -18 5 1525 515 251 135 39 chr4 123251983 123252161 -32377959 + B3A SINE B2 2 196 -2 5 1525 627 192 0 0 chr4 123252212 123252316 -32377804 - B3 SINE B2 -86 130 27 5 1525 887 225 52 29 chr4 123252321 123252531 -32377589 + B3 SINE B2 2 216 0 5 1525 762 189 254 0 chr4 123252546 123252715 -32377405 - B3 SINE B2 0 216 5 5 1525 243 0 0 0 chr4 123252734 123252761 -32377359 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1525 1066 82 0 0 chr4 123252762 123252897 -32377223 - B1_Mus1 SINE Alu -12 136 2 5 1525 261 98 0 0 chr4 123252941 123252982 -32377138 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1525 215 301 103 79 chr4 123253136 123253272 -32376848 - L2 LINE L2 -974 2445 2300 5 1525 1135 42 21 7 chr4 123253272 123253416 -32376704 + B1_Mus1 SINE Alu 3 148 0 5 1525 215 301 103 79 chr4 123253416 123253532 -32376588 - L2 LINE L2 -1120 2299 2187 5 1525 206 81 27 0 chr4 123253551 123253588 -32376532 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1525 265 323 119 19 chr4 123253602 123253643 -32376477 - L2 LINE L2 -1209 2210 2171 5 1525 525 58 0 0 chr4 123253643 123253712 -32376408 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 5 1525 630 0 0 0 chr4 123253716 123253786 -32376334 + (GGGGA)n Simple_repeat Simple_repeat 5 74 0 5 1525 265 323 119 19 chr4 123253786 123254058 -32376062 - L2 LINE L2 -1249 2170 1863 5 1525 534 220 98 8 chr4 123254438 123254571 -32375549 + B1_Mur1 SINE Alu 3 147 -2 5 1525 432 55 0 0 chr4 123254696 123254751 -32375369 + (TATG)n Simple_repeat Simple_repeat 4 58 0 5 1525 237 351 7 30 chr4 123255690 123255825 -32374295 + MIRb SINE MIR 91 222 -46 5 1525 508 229 189 18 chr4 123256061 123256230 -32373890 - B3 SINE B2 0 216 19 5 1525 546 143 144 43 chr4 123256248 123256387 -32373733 - B2_Mm2 SINE B2 0 195 43 5 1525 1587 33 11 0 chr4 123256404 123256588 -32373532 - B2_Mm1a SINE B2 -7 186 1 5 1525 606 197 195 63 chr4 123256745 123256935 -32373185 - B3 SINE B2 -1 215 1 5 1525 224 170 0 41 chr4 123257421 123257470 -32372650 + B1_Mus2 SINE Alu 43 89 -58 5 1525 216 0 0 0 chr4 123257487 123257511 -32372609 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 5 1525 428 214 71 0 chr4 123257610 123257722 -32372398 + B4 SINE B4 79 198 -94 5 1525 842 114 14 0 chr4 123257622 123257762 -32372358 + B1_Mus1 SINE Alu 7 148 0 5 1525 249 57 0 0 chr4 123257870 123257905 -32372215 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1525 1064 90 14 0 chr4 123257933 123258078 -32372042 + B1_Mus1 SINE Alu 2 148 0 5 1525 180 0 0 0 chr4 123258084 123258104 -32372016 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1525 1265 38 0 0 chr4 123258425 123258585 -32371535 + B2_Mm1t SINE B2 1 160 -33 5 1525 266 67 22 0 chr4 123258585 123258630 -32371490 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 1525 185 132 26 0 chr4 123259121 123259159 -32370961 + GA-rich Low_complexity Low_complexity 1 39 0 5 1525 731 128 132 31 chr4 123259195 123259324 -32370796 + B1_Mus1 SINE Alu 5 146 -2 5 1525 533 162 274 0 chr4 123259567 123259684 -32370436 + B1_Mur1 SINE Alu 1 149 0 5 1525 214 185 15 30 chr4 123259915 123259982 -32370138 + GA-rich Low_complexity Low_complexity 4 69 0 5 1525 2621 126 43 37 chr4 123260014 123260474 -32369646 + RMER4A LTR ERVK 1 463 -3 5 1525 677 140 41 75 chr4 123260559 123260706 -32369414 - B1_Mur3 SINE Alu 0 149 8 5 1525 1648 37 0 0 chr4 123260716 123260907 -32369213 - B2_Mm1a SINE B2 0 193 3 5 1525 396 271 64 0 chr4 123260936 123261076 -32369044 + B1F1 SINE Alu 1 149 0 5 1525 532 248 8 31 chr4 123261147 123261276 -32368844 + PB1 SINE Alu 2 127 0 5 1525 633 154 0 0 chr4 123262590 123262700 -32367420 + B2_Mm2 SINE B2 1 110 -85 5 1525 1193 79 97 26 chr4 123263311 123263506 -32366614 + L1_Mus3 LINE L1 6429 6637 -1 5 1525 328 118 365 19 chr4 123263612 123263716 -32366404 - B2_Mm2 SINE B2 -9 186 47 5 1525 1030 123 105 0 chr4 123263782 123263944 -32366176 - B2_Mm1t SINE B2 -14 179 1 5 1525 789 257 10 50 chr4 123263971 123264172 -32365948 + B3A SINE B2 2 194 -4 5 1525 290 71 89 0 chr4 123264554 123264610 -32365510 - B2_Mm1a SINE B2 -6 187 127 5 1525 1371 69 29 0 chr4 123264630 123264805 -32365315 - B2_Mm2 SINE B2 -14 181 2 5 1525 23 68 0 0 chr4 123266829 123266873 -32363247 + AT_rich Low_complexity Low_complexity 1 44 0 5 1525 429 232 43 35 chr4 123266877 123266993 -32363127 - RSINE1 SINE B4 -35 130 14 5 1525 913 244 186 11 chr4 123267016 123267573 -32362547 - L1MB7 LINE L1 0 6184 5491 5 1525 329 300 55 0 chr4 123267575 123267685 -32362435 - PB1D7 SINE Alu 0 120 5 5 1525 830 181 25 6 chr4 123267695 123267856 -32362264 + B3 SINE B2 52 215 -1 5 1525 463 224 116 101 chr4 123267864 123268053 -32362067 + B3A SINE B2 1 192 -6 5 1525 210 37 0 0 chr4 123268068 123268095 -32362025 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1525 517 231 64 46 chr4 123268116 123268391 -32361729 - L1MB7 LINE L1 -708 5472 5191 5 1525 555 233 104 8 chr4 123268403 123268537 -32361583 + B1_Mus1 SINE Alu 1 147 -1 5 1525 1787 144 167 16 chr4 123268548 123268914 -32361206 - MTC LTR MaLR 0 421 1 5 1525 318 87 0 0 chr4 123269030 123269076 -32361044 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 5 1525 278 242 16 0 chr4 123269076 123269138 -32360982 - B1F SINE Alu -12 137 75 5 1525 594 286 44 20 chr4 123269167 123269370 -32360750 - MTD LTR MaLR -194 225 18 6 1525 346 342 59 42 chr4 123270082 123270320 -32359800 - MIRc SINE MIR -6 262 18 6 1525 468 190 207 0 chr4 123270779 123270895 -32359225 + B1_Mur1 SINE Alu 2 141 -8 6 1525 538 208 19 9 chr4 123272487 123272594 -32357526 + PB1D9 SINE Alu 5 112 -8 6 1525 272 155 0 49 chr4 123272658 123272719 -32357401 + B1_Mur4 SINE Alu 92 149 -1 6 1525 1154 41 20 7 chr4 123272989 123273002 -32357118 - B1_Mus1 SINE Alu 0 148 136 6 1525 216 0 0 0 chr4 123273002 123273026 -32357094 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 6 1525 1154 41 20 7 chr4 123273026 123273158 -32356962 - B1_Mus1 SINE Alu -13 135 1 6 1525 333 236 372 7 chr4 123273174 123273319 -32356801 - B3A SINE B2 0 198 1 6 1525 624 254 71 41 chr4 123273422 123273619 -32356501 - ID_B1 SINE B4 -1 223 21 6 1525 207 0 0 0 chr4 123273641 123273664 -32356456 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 6 1525 267 218 0 35 chr4 123273688 123273745 -32356375 - B2_Mm2 SINE B2 -94 101 47 6 1525 1371 82 5 16 chr4 123273773 123273958 -32356162 - B2_Mm1t SINE B2 -10 183 1 6 1525 562 274 51 25 chr4 123274099 123274256 -32355864 + RSINE1 SINE B4 5 165 0 6 1525 300 235 9 93 chr4 123274671 123274779 -32355341 + MT2B LTR ERVL 166 264 -337 6 1525 607 190 28 3 chr4 123274684 123274816 -32355304 + B1_Mus2 SINE Alu 7 148 -1 6 1525 193 301 110 20 chr4 123275405 123275551 -32354569 - MIR SINE MIR -19 243 85 6 1525 180 0 0 0 chr4 123276081 123276101 -32354019 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1525 1121 29 58 0 chr4 123276101 123276240 -32353880 - B1_Mus1 SINE Alu 0 148 2 6 1525 31 26 0 0 chr4 123276665 123276703 -32353417 + AT_rich Low_complexity Low_complexity 1 38 0 6 1525 752 155 23 23 chr4 123276720 123276852 -32353268 + B1_Mur1 SINE Alu 3 134 -15 6 1525 519 82 0 0 chr4 123276852 123276925 -32353195 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 6 1525 180 0 0 0 chr4 123277531 123277551 -32352569 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1525 1690 188 37 82 chr4 123277941 123278370 -32351750 + MTC LTR MaLR 4 413 -8 6 1525 659 241 174 12 chr4 123278375 123278637 -32351483 + L1MB5 LINE L1 5873 6180 0 6 1525 322 217 7 18 chr4 123278646 123278737 -32351383 + B1_Mur4 SINE Alu 1 91 -56 6 1525 480 35 0 0 chr4 123278825 123278883 -32351237 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1525 1229 55 0 0 chr4 123278889 123279035 -32351085 - B1_Mus2 SINE Alu 0 147 2 6 1525 288 323 21 0 chr4 123279439 123279532 -32350588 + RSINE1 SINE B4 69 163 -2 6 1525 210 71 0 0 chr4 123279556 123279584 -32350536 + (GGA)n Simple_repeat Simple_repeat 1 28 0 6 1525 356 247 32 11 chr4 123279589 123279683 -32350437 + B3A SINE B2 2 97 -101 6 1525 182 302 0 0 chr4 123280148 123280201 -32349919 - L2 LINE L2 -839 2580 2528 6 1525 248 272 9 72 chr4 123280395 123280506 -32349614 + PB1D7 SINE Alu 17 120 0 6 1525 622 253 161 0 chr4 123280882 123281056 -32349064 + B3 SINE B2 2 203 -13 6 1525 336 267 70 70 chr4 123281199 123281328 -32348792 + B1_Mur2 SINE Alu 1 129 -20 6 1525 440 223 74 11 chr4 123281324 123281419 -32348701 + B1_Mur2 SINE Alu 49 149 0 6 1525 854 268 14 27 chr4 123281708 123281927 -32348193 - ID_B1 SINE B4 -8 216 1 6 1525 314 73 0 0 chr4 123282031 123282072 -32348048 + B1_Mus2 SINE Alu 96 136 -11 6 1525 521 159 103 0 chr4 123282323 123282430 -32347690 + B1_Mur4 SINE Alu 33 150 0 6 1525 209 108 27 0 chr4 123282440 123282477 -32347643 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1525 640 203 0 41 chr4 123283915 123284038 -32346082 + B1_Mur2 SINE Alu 9 126 -23 6 1525 631 125 412 0 chr4 123284095 123284231 -32345889 + B2_Mm1t SINE B2 2 193 0 6 1525 23 33 0 0 chr4 123284235 123284265 -32345855 + AT_rich Low_complexity Low_complexity 1 30 0 6 1525 25 31 0 0 chr4 123284485 123284517 -32345603 + AT_rich Low_complexity Low_complexity 1 32 0 6 1525 725 228 72 6 chr4 123284523 123284704 -32345416 - B3 SINE B2 -5 211 19 6 1525 231 230 76 63 chr4 123284894 123284973 -32345147 - ID4_ SINE ID 0 83 4 6 1525 591 222 72 7 chr4 123285130 123285266 -32344854 - B1_Mur2 SINE Alu 0 149 6 6 1525 315 49 0 0 chr4 123286141 123286182 -32343938 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1525 248 234 0 30 chr4 123286473 123286539 -32343581 - ID_B1 SINE B4 -15 209 146 6 1525 515 125 0 12 chr4 123286481 123286562 -32343558 - B1_Mur3 SINE Alu -24 125 46 6 1525 1109 22 58 0 chr4 123286817 123286955 -32343165 + B1_Mm SINE Alu 2 147 0 6 1525 1836 170 28 11 chr4 123286992 123287349 -32342771 + RMER4A LTR ERVK 1 363 -103 6 1525 508 138 43 0 chr4 123287331 123287425 -32342695 + RMER4A LTR ERVK 480 577 -8 6 1525 410 257 171 0 chr4 123287444 123287549 -32342571 + ID_B1 SINE B4 2 124 -100 6 1525 219 96 58 0 chr4 123287609 123287661 -32342459 + GA-rich Low_complexity Low_complexity 2 56 0 6 1525 1650 208 50 98 chr4 123288083 123288378 -32341742 - MTD LTR MaLR -2 417 109 6 1525 1236 41 0 0 chr4 123288378 123288525 -32341595 + B1_Mus2 SINE Alu 1 147 0 6 1525 1650 208 50 98 chr4 123288525 123288667 -32341453 - MTD LTR MaLR -311 108 1 6 1525 316 293 0 0 chr4 123288725 123288807 -32341313 + PB1D9 SINE Alu 33 114 -6 6 1525 207 0 0 0 chr4 123289349 123289372 -32340748 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1525 468 226 108 39 chr4 123290000 123290129 -32339991 - B1_Mur2 SINE Alu -11 138 1 6 1525 24 0 0 0 chr4 123290189 123290213 -32339907 + AT_rich Low_complexity Low_complexity 1 24 0 6 1525 450 66 0 0 chr4 123290216 123290314 -32339806 + L1Md_F2 LINE L1 6500 6582 0 6 1525 568 246 86 38 chr4 123292196 123292392 -32337728 + B3A SINE B2 2 194 -1 6 1525 897 50 0 0 chr4 123292437 123292558 -32337562 + B1_Mus2 SINE Alu 27 147 0 6 1525 22 0 0 0 chr4 123292558 123292580 -32337540 + AT_rich Low_complexity Low_complexity 1 22 0 6 1525 260 307 9 56 chr4 123292682 123292789 -32337331 + PB1D10 SINE Alu 10 111 -6 6 1525 498 230 0 0 chr4 123292822 123292922 -32337198 + B1_Mur2 SINE Alu 13 112 -37 6 1525 249 286 0 45 chr4 123292929 123292995 -32337125 + RSINE1 SINE B4 8 70 -95 6 1525 216 0 0 0 chr4 123293060 123293084 -32337036 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1525 229 242 21 62 chr4 123294872 123294969 -32335151 - L2a LINE L2 -6 3420 3328 6 1525 1665 136 123 76 chr4 123295657 123295837 -32334283 - ORR1C2 LTR MaLR 0 384 172 6 1525 387 0 0 0 chr4 123295837 123295880 -32334240 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1525 1665 136 123 76 chr4 123295880 123296066 -32334054 - ORR1C2 LTR MaLR -213 171 1 6 1525 1218 42 0 0 chr4 123297059 123297202 -32332918 + B1_Mus2 SINE Alu 1 143 -4 6 1525 234 0 0 0 chr4 123297202 123297228 -32332892 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1525 295 324 18 45 chr4 123297253 123297363 -32332757 + PB1D10 SINE Alu 9 115 -2 6 1525 615 246 170 0 chr4 123297409 123297580 -32332540 - B3 SINE B2 -1 215 16 6 1525 596 151 19 0 chr4 123297620 123297726 -32332394 - PB1D9 SINE Alu 0 120 13 6 1525 571 148 16 94 chr4 123297737 123297864 -32332256 - PB1D9 SINE Alu -1 119 3 6 1525 1000 207 50 15 chr4 123297977 123298178 -32331942 + B3 SINE B2 2 209 -7 6 1525 1023 72 58 0 chr4 123298241 123298380 -32331740 + B1_Mus1 SINE Alu 1 147 -1 6 1525 433 219 282 26 chr4 123298418 123298535 -32331585 - B1_Mur2 SINE Alu -1 148 2 6 1525 342 256 24 0 chr4 123298660 123298742 -32331378 + Lx8 LINE L1 7136 7219 -254 6 1525 227 167 241 0 chr4 123299694 123299748 -32330372 - ID4 SINE ID -1 82 16 6 1525 718 206 13 52 chr4 123299786 123299940 -32330180 - B1_Mur1 SINE Alu 0 149 2 6 1525 226 154 0 119 chr4 123300284 123300343 -32329777 + ID4_ SINE ID 30 81 -2 6 1525 1105 54 0 70 chr4 123300400 123300558 -32329562 - B1_Mus1 SINE Alu 0 148 2 6 1525 204 40 0 0 chr4 123302172 123302197 -32327923 + (TCC)n Simple_repeat Simple_repeat 2 26 0 6 1525 506 281 65 6 chr4 123302367 123302535 -32327585 - MIR SINE MIR -50 212 35 6 1525 568 228 53 41 chr4 123302633 123302802 -32327318 + MER5A DNA MER1_type 17 187 -2 6 1525 269 326 0 0 chr4 123302950 123303042 -32327078 + MIRc SINE MIR 66 157 -111 6 1525 545 239 28 21 chr4 123303071 123303212 -32326908 + B1F1 SINE Alu 7 148 -1 6 1525 289 287 18 35 chr4 123303237 123303334 -32326786 + ID4_ SINE ID 6 104 -48 6 1525 1166 68 0 7 chr4 123303665 123303813 -32326307 + B1_Mus2 SINE Alu 1 147 0 6 1525 285 29 0 0 chr4 123303813 123303847 -32326273 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1525 712 226 0 0 chr4 123303857 123304003 -32326117 + B1_Mus2 SINE Alu 2 147 0 6 1525 790 155 23 0 chr4 123304079 123304208 -32325912 + B1_Mus2 SINE Alu 9 140 -7 6 1525 302 67 0 22 chr4 123304208 123304254 -32325866 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 6 1525 211 349 0 0 chr4 123304254 123304317 -32325803 - B1F SINE Alu -17 132 70 6 1525 227 217 129 137 chr4 123304384 123304523 -32325597 + ID_B1 SINE B4 53 190 -34 6 1525 253 283 17 0 chr4 123304516 123304576 -32325544 + B3A SINE B2 101 161 -37 6 1525 222 80 60 0 chr4 123304585 123304635 -32325485 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1525 262 234 31 15 chr4 123304729 123304794 -32325326 - ID4_ SINE ID -13 70 5 6 1525 384 260 160 0 chr4 123305159 123305259 -32324861 - B4A SINE B4 -175 117 2 7 1525 474 227 5 56 chr4 123305477 123305595 -32324525 - PB1D10 SINE Alu -7 113 1 7 1525 203 0 37 0 chr4 123305670 123305697 -32324423 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1525 574 208 0 0 chr4 123305699 123305805 -32324315 - PB1D9 SINE Alu -12 108 3 7 1525 552 233 0 15 chr4 123305805 123305929 -32324191 + B1_Mur2 SINE Alu 13 134 -15 7 1525 1197 103 0 0 chr4 123305930 123306105 -32324015 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 7 1525 446 49 16 0 chr4 123306105 123306166 -32323954 + (GAGAA)n Simple_repeat Simple_repeat 1 62 0 7 1525 786 248 86 0 chr4 123306331 123306529 -32323591 - B3 SINE B2 0 216 2 7 1525 599 231 8 0 chr4 123306572 123306689 -32323431 + PB1D9 SINE Alu 2 119 -1 7 1525 520 261 86 31 chr4 123308014 123308176 -32321944 - ID_B1 SINE B4 -50 174 4 7 1525 512 292 23 0 chr4 123308398 123308528 -32321592 + RSINE1 SINE B4 2 134 -31 7 1525 180 0 0 0 chr4 123308891 123308911 -32321209 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1525 640 291 45 20 chr4 123308974 123309220 -32320900 - B4A SINE B4 -38 254 3 7 1525 432 205 0 0 chr4 123309226 123309309 -32320811 - L1MB3 LINE L1 -214 5969 5887 7 1525 260 91 0 52 chr4 123309309 123309367 -32320753 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1525 1240 54 0 0 chr4 123309367 123309514 -32320606 - B1_Mus2 SINE Alu 0 147 1 7 1525 21 0 0 0 chr4 123309633 123309654 -32320466 + AT_rich Low_complexity Low_complexity 1 21 0 7 1525 312 213 51 39 chr4 123309654 123309732 -32320388 - B1F1 SINE Alu -57 92 14 7 1525 237 333 44 89 chr4 123309732 123309812 -32320308 - ID_B1 SINE B4 -54 170 20 7 1525 1101 30 8 0 chr4 123310157 123310288 -32319832 - B1_Mus1 SINE Alu -16 132 1 7 1525 22 0 0 0 chr4 123311154 123311176 -32318944 + AT_rich Low_complexity Low_complexity 1 22 0 7 1525 540 231 25 8 chr4 123312189 123312307 -32317813 - ID_B1 SINE B4 -2 222 103 7 1525 462 191 46 28 chr4 123312307 123312415 -32317705 - B1_Mus1 SINE Alu -38 110 1 7 1525 243 321 0 0 chr4 123312462 123312518 -32317602 - B1_Mus2 SINE Alu -91 56 1 7 1525 1318 85 11 0 chr4 123313149 123313325 -32316795 + B2_Mm1t SINE B2 2 179 -14 7 1525 353 96 308 34 chr4 123313398 123313515 -32316605 + B2_Mm2 SINE B2 47 195 0 7 1525 22 0 0 0 chr4 123313828 123313850 -32316270 + AT_rich Low_complexity Low_complexity 1 22 0 7 1525 1260 34 0 0 chr4 123314056 123314203 -32315917 + B1_Mus2 SINE Alu 1 147 0 7 1525 461 318 26 33 chr4 123314919 123315072 -32315048 + ID_B1 SINE B4 11 162 -62 7 1525 240 301 272 0 chr4 123315243 123315346 -32314774 + RSINE1 SINE B4 15 145 -20 7 1525 213 39 0 0 chr4 123315376 123315402 -32314718 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1525 1033 23 98 0 chr4 123315402 123315534 -32314586 - B1_Mm SINE Alu -2 145 1 7 1525 1585 146 130 6 chr4 123315534 123315857 -32314263 + ORR1D1 LTR MaLR 4 366 -8 7 1525 1193 55 7 0 chr4 123315901 123316046 -32314074 + B1_Mm SINE Alu 1 146 -1 7 1525 546 321 0 0 chr4 123316099 123316230 -32313890 + B1F SINE Alu 10 140 -9 7 1525 227 260 0 0 chr4 123316232 123316282 -32313838 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 7 1525 217 333 14 0 chr4 123316325 123316394 -32313726 + B4 SINE B4 3 72 -220 7 1525 207 0 0 0 chr4 123316404 123316427 -32313693 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1525 1129 65 0 0 chr4 123316427 123316565 -32313555 - B1_Mus2 SINE Alu -9 138 1 7 1525 540 167 233 0 chr4 123316568 123316688 -32313432 - B1_Mus1 SINE Alu 0 148 1 7 1525 21 57 0 0 chr4 123316694 123316729 -32313391 + AT_rich Low_complexity Low_complexity 1 35 0 7 1525 222 62 0 0 chr4 123316777 123316809 -32313311 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 7 1525 259 57 57 0 chr4 123316930 123316983 -32313137 + B2_Mm2 SINE B2 137 192 -3 7 1525 486 303 14 0 chr4 123317276 123317418 -32312702 - MIRb SINE MIR -66 202 59 7 1525 1781 247 161 32 chr4 123317549 123318164 -32311956 + Lx8 LINE L1 6780 7473 0 7 1525 256 161 36 0 chr4 123318179 123318235 -32311885 + B1_Mus1 SINE Alu 2 59 -89 7 1525 189 0 0 0 chr4 123318241 123318262 -32311858 + (G)n Simple_repeat Simple_repeat 1 21 0 7 1525 1326 103 0 11 chr4 123318280 123318467 -32311653 + B2_Mm2 SINE B2 2 186 -9 7 1525 647 210 16 8 chr4 123318501 123318626 -32311494 + B1_Mur1 SINE Alu 17 142 -7 7 1525 856 34 193 0 chr4 123318757 123318876 -32311244 - B1_Mus1 SINE Alu -5 143 2 7 1525 187 286 142 9 chr4 123318935 123319048 -32311072 + MIRb SINE MIR 66 193 -75 7 1525 746 161 212 28 chr4 123319140 123319319 -32310801 + B3 SINE B2 5 216 0 7 1525 1170 36 0 0 chr4 123319326 123319464 -32310656 + B1_Mus1 SINE Alu 1 138 -10 7 1525 225 0 0 0 chr4 123319464 123319489 -32310631 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1525 223 219 0 0 chr4 123319737 123319778 -32310342 + ID SINE ID 30 70 -154 7 1525 394 233 33 33 chr4 123319870 123319990 -32310130 - MER5A1 DNA MER1_type -2 164 45 7 1525 384 22 0 0 chr4 123321214 123321259 -32308861 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1525 21 57 0 0 chr4 123321294 123321329 -32308791 + AT_rich Low_complexity Low_complexity 1 35 0 7 1525 1071 84 7 0 chr4 123321330 123321484 -32308636 + B2_Mm1a SINE B2 1 155 -38 7 1525 333 0 0 0 chr4 123321485 123321522 -32308598 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 7 1525 313 51 138 92 chr4 123321525 123321590 -32308530 - B2_Mm2 SINE B2 -18 177 110 7 1525 1185 74 0 0 chr4 123321591 123321739 -32308381 + B1_Mus1 SINE Alu 1 148 0 7 1525 378 0 0 0 chr4 123321743 123321785 -32308335 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1525 884 49 0 62 chr4 123321790 123321920 -32308200 - B2_Mm2 SINE B2 -72 123 2 7 1525 974 208 66 0 chr4 123321943 123322140 -32307980 - B3 SINE B2 -6 210 1 7 1525 235 230 189 33 chr4 123322157 123322247 -32307873 + PB1D10 SINE Alu 7 110 -7 7 1525 737 164 8 23 chr4 123322506 123322637 -32307483 - B1_Mur3 SINE Alu -20 129 1 7 1525 585 0 0 0 chr4 123323200 123323265 -32306855 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1525 252 0 0 0 chr4 123323265 123323292 -32306828 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1525 1213 65 42 0 chr4 123323320 123323488 -32306632 + B2_Mm2 SINE B2 14 188 -7 7 1525 1380 82 22 0 chr4 123323688 123323870 -32306250 - B2_Mm2 SINE B2 -9 186 1 7 1525 293 286 0 28 chr4 123324036 123324108 -32306012 - B1F2 SINE Alu -59 90 21 7 1525 431 208 0 109 chr4 123324227 123324346 -32305774 + MT2B LTR ERVL 152 257 -344 7 1525 979 72 22 0 chr4 123324249 123324388 -32305732 + B1_Mm SINE Alu 6 147 0 7 1525 309 215 15 0 chr4 123324532 123324597 -32305523 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 7 1525 663 176 250 18 chr4 123324656 123324824 -32305296 + B3 SINE B2 4 210 -6 7 1525 317 242 0 0 chr4 123325129 123325191 -32304929 - ID4 SINE ID -7 76 15 7 1525 254 271 14 0 chr4 123325585 123325655 -32304465 - ID4_ SINE ID -10 73 3 7 1525 180 0 0 0 chr4 123325783 123325803 -32304317 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1525 180 0 0 0 chr4 123325821 123325841 -32304279 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1525 1132 68 0 33 chr4 123325859 123326010 -32304110 - B1_Mus2 SINE Alu 0 147 2 7 1525 1436 75 27 0 chr4 123326046 123326233 -32303887 + B2_Mm1a SINE B2 2 193 0 7 1525 941 72 57 7 chr4 123326553 123326693 -32303427 + B1_Mus1 SINE Alu 2 148 0 7 1525 699 221 81 52 chr4 123326858 123327068 -32303052 - B3 SINE B2 0 216 1 7 1525 837 113 0 31 chr4 123327130 123327258 -32302862 + B1_Mur4 SINE Alu 10 133 -17 7 1525 1261 27 0 0 chr4 123327798 123327944 -32302176 - B1_Mus2 SINE Alu 0 147 2 7 1525 485 238 49 0 chr4 123327992 123328114 -32302006 - RSINE1 SINE B4 -34 131 4 7 1525 969 246 37 61 chr4 123328580 123328875 -32301245 - B4A SINE B4 -4 288 1 7 1525 225 137 38 38 chr4 123328936 123328989 -32301131 - L1MEf LINE L1 -4406 1794 1742 7 1525 298 326 21 10 chr4 123330312 123330408 -32299712 + B3A SINE B2 102 198 0 7 1525 383 0 21 0 chr4 123330535 123330582 -32299538 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1525 216 0 0 0 chr4 123330742 123330766 -32299354 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1525 1216 48 7 0 chr4 123330917 123331063 -32299057 + B1_Mus2 SINE Alu 1 147 0 7 1525 780 178 22 0 chr4 123331086 123331221 -32298899 + B1_Mur3 SINE Alu 1 138 -11 7 1525 358 210 113 57 chr4 123331238 123331344 -32298776 + PB1D10 SINE Alu 5 116 -1 7 1525 248 318 135 44 chr4 123332069 123332365 -32297755 + L2 LINE L2 2527 2849 -570 7 1525 387 171 0 79 chr4 123332800 123332889 -32297231 + B1F SINE Alu 68 149 0 7 1525 1111 59 0 7 chr4 123333046 123333182 -32296938 + B1_Mus1 SINE Alu 2 136 -12 7 1525 362 21 0 21 chr4 123333183 123333231 -32296889 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1525 285 109 0 0 chr4 123333313 123333359 -32296761 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1525 551 221 54 81 chr4 123333359 123333507 -32296613 - B1_Mur4 SINE Alu -1 149 6 7 1525 404 246 200 0 chr4 123333522 123333632 -32296488 - B3 SINE B2 0 216 85 8 1525 448 179 107 121 chr4 123333919 123334059 -32296061 - B4A SINE B4 0 292 155 8 1525 822 249 50 5 chr4 123334244 123334446 -32295674 - ID_B1 SINE B4 -4 220 10 8 1525 1463 70 0 11 chr4 123334450 123334638 -32295482 - B2_Mm1a SINE B2 -6 187 2 8 1525 354 297 45 9 chr4 123334666 123334778 -32295342 - B1F SINE Alu -28 121 6 8 1525 838 56 0 0 chr4 123334797 123334904 -32295216 - B1_Mus2 SINE Alu 0 147 41 8 1525 285 195 62 49 chr4 123334840 123334921 -32295199 - RLTR25B LTR ERVK -519 509 428 8 1525 629 131 0 9 chr4 123334922 123335030 -32295090 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 8 1525 887 181 220 0 chr4 123335054 123335231 -32294889 + B3 SINE B2 1 216 0 8 1525 1162 89 0 0 chr4 123335996 123336142 -32293978 + B1_Mus1 SINE Alu 2 147 -1 8 1525 491 291 99 20 chr4 123336232 123336383 -32293737 - B4A SINE B4 -2 290 128 8 1525 269 222 31 31 chr4 123336464 123336529 -32293591 + ID4_ SINE ID 3 67 -16 8 1525 965 121 17 88 chr4 123336905 123337086 -32293034 + B2_Mm2 SINE B2 1 168 -27 8 1525 757 152 72 7 chr4 123337106 123337245 -32292875 - B1_Mur3 SINE Alu 0 149 2 8 1525 725 233 0 26 chr4 123337400 123337554 -32292566 + B1_Mur4 SINE Alu 1 150 0 8 1525 188 244 88 25 chr4 123337809 123337889 -32292231 + MIRc SINE MIR 176 260 -8 8 1525 1239 41 0 7 chr4 123338035 123338183 -32291937 + B1_Mus2 SINE Alu 1 147 0 8 1525 318 244 82 33 chr4 123338529 123338639 -32291481 + PB1D10 SINE Alu 6 109 -8 8 1526 516 140 254 0 chr4 123339373 123339487 -32290633 - B1_Mur3 SINE Alu -5 144 2 8 1526 483 144 88 11 chr4 123339490 123339581 -32290539 - PB1D9 SINE Alu -5 115 18 8 1526 531 273 79 11 chr4 123339605 123339783 -32290337 - B3A SINE B2 -7 191 2 8 1526 1178 171 0 57 chr4 123339820 123340049 -32290071 + B3 SINE B2 1 216 0 8 1526 29 108 0 0 chr4 123341580 123341700 -32288420 + GC_rich Low_complexity Low_complexity 1 120 0 8 1526 27 73 0 0 chr4 123341806 123341861 -32288259 + GC_rich Low_complexity Low_complexity 1 55 0 8 1526 25 31 0 0 chr4 123342070 123342102 -32288018 + GC_rich Low_complexity Low_complexity 1 32 0 8 1526 22 88 0 0 chr4 123342113 123342170 -32287950 + GC_rich Low_complexity Low_complexity 1 57 0 8 1526 21 95 0 0 chr4 123342323 123342386 -32287734 + GC_rich Low_complexity Low_complexity 1 63 0 8 1526 22 35 0 0 chr4 123342426 123342455 -32287665 + GC_rich Low_complexity Low_complexity 1 29 0 8 1526 231 226 38 0 chr4 123343118 123343171 -32286949 + B4A SINE B4 88 142 -150 8 1526 467 235 39 10 chr4 123343124 123343227 -32286893 + PB1D7 SINE Alu 10 115 -5 8 1526 180 0 0 0 chr4 123343710 123343730 -32286390 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1526 460 256 70 23 chr4 123344284 123344412 -32285708 + B1_Mur2 SINE Alu 1 134 -15 8 1526 318 293 9 83 chr4 123344458 123344566 -32285554 + PB1D10 SINE Alu 18 117 0 8 1526 441 0 0 0 chr4 123345258 123345307 -32284813 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1526 418 222 29 29 chr4 123345307 123345409 -32284711 - B3A SINE B2 -50 148 47 8 1526 1384 79 0 6 chr4 123345431 123345609 -32284511 - B2_Mm2 SINE B2 -18 177 1 8 1526 273 89 0 0 chr4 123345622 123345667 -32284453 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 8 1526 1253 41 0 0 chr4 123345674 123345820 -32284300 - B1_Mm SINE Alu -1 146 1 8 1526 654 231 7 39 chr4 123345826 123345979 -32284141 - B1_Mur3 SINE Alu 0 149 2 8 1526 361 275 83 42 chr4 123345851 123345995 -32284125 - B4 SINE B4 -69 223 74 8 1526 356 265 14 152 chr4 123345983 123346121 -32283999 - PB1 SINE Alu -2 125 7 8 1526 248 273 171 53 chr4 123346207 123346377 -32283743 - B4A SINE B4 -21 271 82 8 1526 1046 223 44 0 chr4 123346397 123346603 -32283517 - B3 SINE B2 0 216 2 8 1526 311 207 35 0 chr4 123346841 123346899 -32283221 + tRNA-Ala-GCY_ tRNA tRNA 2 61 -14 8 1526 562 250 22 22 chr4 123347118 123347253 -32282867 + B1_Mur4 SINE Alu 1 135 -15 8 1526 569 151 182 0 chr4 123347262 123347388 -32282732 + B1_Mur2 SINE Alu 1 149 0 8 1526 305 24 0 23 chr4 123347601 123347644 -32282476 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1526 206 288 17 0 chr4 123348251 123348310 -32281810 + MIRc SINE MIR 205 264 -4 8 1526 225 350 57 0 chr4 123348318 123348441 -32281679 + MIRb SINE MIR 15 147 -121 8 1526 1026 124 0 7 chr4 123348620 123348766 -32281354 + B1_Mur4 SINE Alu 5 149 -1 8 1526 1572 67 0 5 chr4 123349177 123349373 -32280747 - B2_Mm2 SINE B2 0 195 1 8 1526 465 19 0 0 chr4 123349377 123349431 -32280689 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 8 1526 240 35 0 0 chr4 123349433 123349462 -32280658 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 8 1526 1021 101 67 0 chr4 123349462 123349611 -32280509 - B2_Mm1a SINE B2 -34 159 1 8 1526 238 188 0 77 chr4 123349636 123349688 -32280432 - B1_Mur4 SINE Alu 0 150 103 8 1526 186 43 0 0 chr4 123349740 123349763 -32280357 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1526 1188 75 0 0 chr4 123349763 123349910 -32280210 - B1_Mus2 SINE Alu 0 147 1 8 1526 755 75 0 9 chr4 123349949 123350057 -32280063 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 8 1526 720 224 0 0 chr4 123350057 123350182 -32279938 - B1_Mur1 SINE Alu -24 125 1 8 1526 647 168 34 8 chr4 123350607 123350746 -32279374 + B1_Mur2 SINE Alu 7 149 0 8 1526 212 254 0 31 chr4 123350746 123350811 -32279309 + A-rich Low_complexity Low_complexity 4 66 0 8 1526 1165 88 0 0 chr4 123350824 123350971 -32279149 + B1_Mus1 SINE Alu 2 148 0 8 1526 345 182 78 0 chr4 123350972 123351049 -32279071 + ID_B1 SINE B4 137 219 -5 8 1526 330 286 57 0 chr4 123351065 123351170 -32278950 + PB1D7 SINE Alu 4 114 -6 8 1526 630 226 140 34 chr4 123351195 123351366 -32278754 + B3 SINE B2 44 210 -6 8 1526 250 213 43 0 chr4 123351366 123351413 -32278707 + ID4 SINE ID 33 81 -2 8 1526 597 250 30 8 chr4 123351436 123351569 -32278551 + B1_Mur2 SINE Alu 1 136 -13 8 1526 761 110 19 7 chr4 123351662 123351817 -32278303 + (TA)n Simple_repeat Simple_repeat 1 157 0 8 1526 279 0 0 0 chr4 123351817 123351847 -32278273 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 1526 344 289 26 0 chr4 123351856 123351932 -32278188 + B1F2 SINE Alu 2 79 -70 8 1526 262 259 71 118 chr4 123351857 123351984 -32278136 + MT2B LTR ERVL 167 287 -314 8 1526 559 179 152 0 chr4 123351972 123352084 -32278036 + B1_Mus1 SINE Alu 20 148 0 8 1526 299 286 0 0 chr4 123352186 123352256 -32277864 - ID2 SINE ID -10 73 4 8 1526 279 233 80 27 chr4 123352267 123352342 -32277778 - PB1D10 SINE Alu -3 114 36 8 1526 264 77 0 0 chr4 123352405 123352444 -32277676 + (ATTG)n Simple_repeat Simple_repeat 4 42 0 8 1526 272 164 13 0 chr4 123352460 123352513 -32277607 - B1F1 SINE Alu -16 133 78 8 1526 733 214 20 20 chr4 123352517 123352665 -32277455 - B1_Mur2 SINE Alu -1 148 1 8 1526 228 355 58 17 chr4 123353503 123353675 -32276445 - MIRb SINE MIR -21 247 69 8 1526 186 274 101 56 chr4 123354968 123355057 -32275063 - MIRb SINE MIR -40 228 136 8 1526 198 0 0 0 chr4 123355167 123355189 -32274931 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1526 1187 48 14 0 chr4 123355189 123355334 -32274786 - B1_Mus1 SINE Alu 0 148 2 8 1526 285 98 0 0 chr4 123355361 123355402 -32274718 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 8 1526 1689 36 0 0 chr4 123355836 123356028 -32274092 - B2_Mm1a SINE B2 0 193 2 8 1526 1025 87 65 0 chr4 123356046 123356184 -32273936 - B1_Mm SINE Alu 0 147 1 8 1526 493 210 155 0 chr4 123356572 123356711 -32273409 + ID_B1 SINE B4 69 224 0 8 1526 256 326 21 10 chr4 123356815 123356911 -32273209 - MER91B DNA Tip100 -60 130 34 8 1526 930 126 17 46 chr4 123356970 123357145 -32272975 + B2_Mm2 SINE B2 1 170 -25 8 1526 3519 179 106 24 chr4 123357150 123358125 -32271995 + Lx4B LINE L1 5924 7058 0 8 1526 681 13 0 0 chr4 123359485 123359563 -32270557 + (GGA)n Simple_repeat Simple_repeat 2 79 0 8 1526 699 95 0 0 chr4 123360154 123360249 -32269871 - B2_Mm2 SINE B2 -65 130 36 8 1526 366 234 0 13 chr4 123360261 123360339 -32269781 + B3 SINE B2 30 106 -110 8 1526 531 253 0 82 chr4 123360604 123360619 -32269501 + ID_B1 SINE B4 78 222 -1 8 1526 819 190 7 7 chr4 123360619 123360762 -32269358 + B1_Mur2 SINE Alu 7 149 0 8 1526 342 152 0 0 chr4 123360972 123361031 -32269089 + T-rich Low_complexity Low_complexity 1 59 0 8 1526 187 236 125 0 chr4 123361546 123361618 -32268502 + MIRb SINE MIR 63 143 -125 8 1526 210 71 0 0 chr4 123361697 123361725 -32268395 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1526 542 285 61 50 chr4 123361746 123361927 -32268193 + B3A SINE B2 1 183 -15 8 1526 656 169 97 30 chr4 123361977 123362111 -32268009 + B1_Mur1 SINE Alu 7 149 0 8 1526 181 0 0 128 chr4 123362113 123362152 -32267968 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1526 397 332 42 26 chr4 123362186 123362399 -32267721 + MIRc SINE MIR 29 250 -18 8 1526 193 327 0 0 chr4 123362427 123362482 -32267638 + MIRb SINE MIR 162 216 -52 8 1526 465 300 32 43 chr4 123362604 123362792 -32267328 + MIRb SINE MIR 67 252 -16 9 1526 25 31 0 0 chr4 123364354 123364386 -32265734 + GC_rich Low_complexity Low_complexity 1 32 0 9 1526 24 32 0 0 chr4 123364523 123364554 -32265566 + GC_rich Low_complexity Low_complexity 1 31 0 9 1526 224 182 33 43 chr4 123364576 123364696 -32265424 + (CCCG)n Simple_repeat Simple_repeat 1 118 0 9 1526 342 293 31 94 chr4 123365343 123365471 -32264649 - L2c LINE L2 0 3387 3268 9 1526 1156 81 0 13 chr4 123365718 123365868 -32264252 + B1_Mus1 SINE Alu 1 148 0 9 1526 402 74 0 0 chr4 123365915 123365969 -32264151 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1526 291 192 0 19 chr4 123365978 123366031 -32264089 - RSINE1 SINE B4 -21 144 93 9 1526 24 0 0 0 chr4 123366110 123366134 -32263986 + AT_rich Low_complexity Low_complexity 1 24 0 9 1526 1654 27 0 0 chr4 123366139 123366326 -32263794 - B2_Mm1t SINE B2 -6 187 1 9 1526 246 205 16 89 chr4 123366333 123366456 -32263664 - Lx8 LINE L1 -1 7472 7359 9 1526 213 347 0 0 chr4 123366473 123366522 -32263598 - RSINE1 SINE B4 -114 51 3 9 1526 523 266 0 169 chr4 123366555 123366636 -32263484 + B1F SINE Alu 7 87 -62 9 1526 1342 88 16 5 chr4 123366636 123366820 -32263300 + B2_Mm2 SINE B2 2 187 -8 9 1526 523 266 0 169 chr4 123366820 123366910 -32263210 + B1F SINE Alu 88 149 0 9 1526 238 294 0 0 chr4 123366927 123366978 -32263142 + Lx8 LINE L1 7279 7329 -144 9 1526 435 221 77 0 chr4 123367015 123367119 -32263001 + B3 SINE B2 105 216 0 9 1526 180 0 0 0 chr4 123367885 123367905 -32262215 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 9 1526 503 236 0 0 chr4 123368193 123368282 -32261838 + B1_Mur4 SINE Alu 1 89 -61 9 1526 755 175 8 0 chr4 123368371 123368497 -32261623 - B1_Mur4 SINE Alu 0 150 24 9 1526 320 214 28 14 chr4 123368556 123368627 -32261493 - ID4 SINE ID -9 74 3 9 1526 195 348 17 104 chr4 123368881 123368968 -32261152 + L2b LINE L2 3163 3243 -132 9 1526 414 216 71 89 chr4 123368968 123369080 -32261040 + PB1D10 SINE Alu 1 110 -7 9 1526 195 348 17 104 chr4 123369080 123369165 -32260955 + L2b LINE L2 3244 3320 -55 9 1526 270 81 0 0 chr4 123369196 123369233 -32260887 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 9 1526 957 267 107 96 chr4 123369406 123369762 -32260358 + MTEa LTR MaLR 18 377 -2 9 1526 234 284 0 0 chr4 123369841 123369908 -32260212 + CT-rich Low_complexity Low_complexity 2 68 0 9 1526 352 324 29 0 chr4 123369913 123370018 -32260102 - PB1D10 SINE Alu -9 108 1 9 1526 210 143 0 0 chr4 123370131 123370166 -32259954 + (TTG)n Simple_repeat Simple_repeat 2 36 0 9 1526 993 135 0 7 chr4 123370167 123370316 -32259804 - B1_Mus1 SINE Alu 0 148 1 9 1526 872 182 155 0 chr4 123370342 123370529 -32259591 - B3 SINE B2 0 216 1 9 1526 489 298 3 3 chr4 123371177 123371292 -32258828 + PB1D10 SINE Alu 5 115 -2 9 1526 1112 202 21 5 chr4 123371311 123371505 -32258615 + B3 SINE B2 3 199 -17 9 1526 484 72 313 35 chr4 123371518 123371633 -32258487 - B2_Mm2 SINE B2 -2 193 47 9 1526 1167 148 11 0 chr4 123371680 123371856 -32258264 - B2_Mm1t SINE B2 -14 179 2 9 1526 22 35 0 0 chr4 123371856 123371885 -32258235 + AT_rich Low_complexity Low_complexity 1 29 0 9 1526 2312 76 13 6 chr4 123371895 123372213 -32257907 + L1_Mus3 LINE L1 6312 6631 -7 9 1526 331 195 10 139 chr4 123372638 123372653 -32257467 + MT2B2 LTR ERVL 156 157 -427 9 1526 474 246 22 60 chr4 123372653 123372787 -32257333 + B1F SINE Alu 2 130 -19 9 1526 523 231 31 69 chr4 123372698 123372828 -32257292 - B1_Mur1 SINE Alu -11 138 14 9 1526 332 314 29 29 chr4 123372843 123372948 -32257172 - PB1D10 SINE Alu -11 106 2 9 1526 558 286 16 58 chr4 123373027 123373216 -32256904 - MLT1C LTR MaLR 0 467 287 9 1526 314 230 156 33 chr4 123373228 123373318 -32256802 - PB1 SINE Alu -15 112 12 9 1526 228 67 0 0 chr4 123373345 123373375 -32256745 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 9 1526 339 267 13 0 chr4 123373471 123373546 -32256574 + B3A SINE B2 81 156 -42 9 1526 1419 70 0 31 chr4 123373547 123373740 -32256380 - B2_Mm1t SINE B2 -5 188 2 9 1526 23 0 0 0 chr4 123373742 123373765 -32256355 + AT_rich Low_complexity Low_complexity 1 23 0 9 1526 332 283 20 20 chr4 123373769 123373870 -32256250 - MLT1C LTR MaLR -275 115 15 9 1526 660 295 64 60 chr4 123373890 123374079 -32256041 - L1M5 LINE L1 -389 5790 5604 9 1526 1453 61 17 0 chr4 123374079 123374259 -32255861 - B2_Mm2 SINE B2 -10 185 3 9 1526 660 295 64 60 chr4 123374259 123374505 -32255615 - L1M5 LINE L1 -576 5603 5353 9 1526 1080 122 0 0 chr4 123374507 123374655 -32255465 - B1_Mus1 SINE Alu 0 148 1 9 1526 420 20 0 0 chr4 123374662 123374711 -32255409 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1526 491 0 17 0 chr4 123374714 123374773 -32255347 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1526 767 125 0 99 chr4 123374773 123374915 -32255205 - B2_Mm2 SINE B2 -53 142 15 9 1526 299 294 42 30 chr4 123374917 123375082 -32255038 - L1MD LINE L1 -891 5255 5089 9 1526 1099 175 82 0 chr4 123375127 123375216 -32254904 - RLTR20D LTR ERVK 0 568 466 9 1526 414 0 0 0 chr4 123375216 123375262 -32254858 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1526 1692 180 52 8 chr4 123375262 123375635 -32254485 - RLTR20D LTR ERVK -103 465 29 9 1526 403 285 75 6 chr4 123375684 123375843 -32254277 - L1MD LINE L1 -1021 5125 4956 9 1526 918 245 17 143 chr4 123375885 123375995 -32254125 - MTD LTR MaLR -107 312 205 9 1526 567 0 0 0 chr4 123375995 123376058 -32254062 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 9 1526 990 109 7 0 chr4 123376058 123376196 -32253924 - B1_Mur2 SINE Alu -1 148 10 9 1526 918 245 17 143 chr4 123376196 123376304 -32253816 - MTD LTR MaLR -215 204 1 9 1526 285 128 0 0 chr4 123376367 123376414 -32253706 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1526 435 170 277 10 chr4 123376430 123376531 -32253589 - B1_Mur1 SINE Alu 0 149 22 9 1526 290 354 79 44 chr4 123376536 123376852 -32253268 - Tigger7 DNA MER2_type -1199 1219 814 9 1526 231 366 14 0 chr4 123377111 123377182 -32252938 - RSINE1 SINE B4 -17 148 77 9 1526 423 0 0 0 chr4 123377193 123377240 -32252880 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1526 925 141 0 27 chr4 123377246 123377392 -32252728 - B1_Mur3 SINE Alu -7 142 1 9 1526 222 286 79 0 chr4 123377412 123377475 -32252645 - RSINE1 SINE B4 -87 78 11 9 1526 1129 84 12 0 chr4 123377564 123377731 -32252389 + (TCTCC)n Simple_repeat Simple_repeat 5 173 0 9 1526 456 19 0 0 chr4 123377731 123377783 -32252337 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 9 1526 358 141 26 66 chr4 123377814 123377890 -32252230 + B3 SINE B2 144 216 0 9 1526 1214 190 19 0 chr4 123377902 123378113 -32252007 + B3 SINE B2 2 216 0 9 1526 936 139 21 0 chr4 123378133 123378277 -32251843 + B1_Mus2 SINE Alu 1 147 0 9 1526 620 59 0 0 chr4 123378622 123378707 -32251413 - B2_Mm1a SINE B2 -1 192 108 9 1526 1251 89 6 22 chr4 123378700 123378883 -32251237 + B2_Mm1t SINE B2 8 187 -6 9 1526 4241 160 48 20 chr4 123378874 123379685 -32250435 + ORR1B1-int LTR MaLR 510 1343 -166 9 1526 717 123 329 0 chr4 123379695 123379841 -32250279 - B2_Mm2 SINE B2 0 195 2 9 1526 425 270 114 38 chr4 123379844 123379975 -32250145 - ID_B1 SINE B4 0 224 84 9 1526 435 339 71 0 chr4 123379999 123380182 -32249938 - B3A SINE B2 -1 197 2 9 1526 272 286 0 0 chr4 123380216 123380286 -32249834 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1526 467 317 0 63 chr4 123380286 123380461 -32249659 - RSINE1 SINE B4 0 165 2 9 1526 1276 182 0 0 chr4 123380496 123380699 -32249421 - B3 SINE B2 -13 203 1 9 1526 266 222 19 0 chr4 123380772 123380826 -32249294 - RSINE1 SINE B4 -47 118 64 9 1526 1678 135 169 21 chr4 123380829 123381161 -32248959 - ORR1B1 LTR MaLR -13 381 1 9 1526 251 340 77 10 chr4 123381161 123381221 -32248899 - RSINE1 SINE B4 -88 77 11 9 1526 499 294 52 9 chr4 123381224 123381457 -32248663 - L1MDa LINE L1 -5506 1127 885 9 1526 884 290 38 47 chr4 123381707 123381954 -32248166 - L1MDa LINE L1 -6253 380 127 9 1526 1219 62 0 0 chr4 123381954 123382099 -32248021 - B1_Mus2 SINE Alu -1 146 2 9 1526 884 290 38 47 chr4 123382099 123382216 -32247904 - L1MDa LINE L1 -6507 126 19 9 1526 323 216 182 20 chr4 123382248 123382347 -32247773 + PB1D10 SINE Alu 3 117 0 9 1526 1163 45 0 0 chr4 123382389 123382522 -32247598 + B1_Mm SINE Alu 2 134 -13 9 1526 231 264 149 67 chr4 123382539 123382673 -32247447 + MER102c DNA MER1_type 109 253 -78 9 1526 358 100 0 0 chr4 123382992 123383042 -32247078 - URR1B DNA MER1_type 0 225 176 9 1526 367 137 0 27 chr4 123383096 123383171 -32246949 + CT-rich Low_complexity Low_complexity 3 75 0 9 1526 347 221 45 34 chr4 123383176 123383265 -32246855 - RLTR11A2 LTR ERVK -437 90 1 9 1526 366 262 12 12 chr4 123383373 123383458 -32246662 + B4A SINE B4 1 85 -207 9 1526 339 244 247 12 chr4 123383461 123383623 -32246497 - L1M4 LINE L1 -1249 4897 4698 9 1526 627 51 0 0 chr4 123383625 123383704 -32246416 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1526 267 31 0 0 chr4 123383704 123383735 -32246385 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1526 742 110 16 56 chr4 123383871 123383996 -32246124 - B1_Mur4 SINE Alu 0 150 31 9 1526 189 139 0 0 chr4 123384087 123384130 -32245990 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1526 1093 65 0 14 chr4 123384131 123384271 -32245849 - B1_Mm SINE Alu -1 146 9 9 1526 681 192 7 58 chr4 123384132 123384287 -32245833 - ID_B1 SINE B4 0 224 78 9 1526 21 0 0 0 chr4 123384329 123384350 -32245770 + AT_rich Low_complexity Low_complexity 1 21 0 9 1526 740 159 19 70 chr4 123384427 123384583 -32245537 - B1_Mur1 SINE Alu -1 148 1 9 1526 313 296 20 136 chr4 123384583 123384634 -32245486 - B4 SINE B4 -222 70 43 9 1526 311 267 54 32 chr4 123384585 123384678 -32245442 - PB1D10 SINE Alu -15 102 8 9 1526 808 249 5 22 chr4 123384723 123384908 -32245212 - B3A SINE B2 -16 182 1 1 1526 324 328 37 95 chr4 123384919 123384968 -32245152 - B4A SINE B4 -20 272 224 1 1526 1373 85 11 0 chr4 123384968 123385145 -32244975 + B2_Mm1t SINE B2 1 179 -14 1 1526 324 328 37 95 chr4 123385145 123385174 -32244946 - B4A SINE B4 -69 223 95 1 1526 445 216 120 6 chr4 123385174 123385284 -32244836 - B1_Mur2 SINE Alu -3 117 10 1 1526 549 267 76 48 chr4 123385342 123385595 -32244525 + L1MB3 LINE L1 5860 6119 -64 1 1526 231 286 111 0 chr4 123385626 123385689 -32244431 - ID4 SINE ID -12 71 2 1 1526 553 276 40 40 chr4 123385718 123385892 -32244228 - B3A SINE B2 -10 188 15 1 1526 379 318 54 18 chr4 123385932 123386044 -32244076 + PB1D7 SINE Alu 5 120 0 1 1526 582 241 151 26 chr4 123386094 123386286 -32243834 + B3 SINE B2 1 216 0 1 1526 192 77 0 0 chr4 123386393 123386419 -32243701 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1526 1500 0 0 21 chr4 123387275 123387607 -32242513 + (GAA)n Simple_repeat Simple_repeat 1 324 0 1 1526 1634 42 0 0 chr4 123387633 123387824 -32242296 - B2_Mm1a SINE B2 -1 192 2 1 1526 1632 47 0 0 chr4 123387832 123388025 -32242095 - B2_Mm1t SINE B2 0 193 1 1 1526 318 260 149 28 chr4 123388047 123388154 -32241966 - B3 SINE B2 -7 209 90 1 1526 594 221 43 35 chr4 123388146 123388287 -32241833 + B1_Mur3 SINE Alu 8 149 0 1 1526 27 29 0 0 chr4 123388398 123388432 -32241688 + AT_rich Low_complexity Low_complexity 1 34 0 1 1526 213 121 0 0 chr4 123388448 123388481 -32241639 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1526 887 90 104 7 chr4 123388481 123388616 -32241504 - B1_Mus1 SINE Alu 0 148 1 1 1526 359 308 39 77 chr4 123388659 123388814 -32241306 + RSINE1 SINE B4 11 159 -6 1 1526 21 26 0 26 chr4 123388847 123388865 -32241255 + AT_rich Low_complexity Low_complexity 1 18 0 1 1526 1038 80 66 0 chr4 123388865 123389002 -32241118 + B1_Mus2 SINE Alu 2 147 0 1 1526 21 26 0 26 chr4 123389002 123389022 -32241098 + AT_rich Low_complexity Low_complexity 1 20 0 1 1526 1395 71 33 0 chr4 123389028 123389212 -32240908 + B2_Mm2 SINE B2 2 191 -4 1 1526 1433 80 11 0 chr4 123389217 123389405 -32240715 + B2_Mm1a SINE B2 2 191 -2 1 1526 231 231 0 37 chr4 123389416 123389470 -32240650 + B1F SINE Alu 5 56 -93 1 1526 527 191 15 58 chr4 123390273 123390395 -32239725 + B1F2 SINE Alu 1 120 0 1 1526 180 0 0 0 chr4 123390415 123390435 -32239685 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1526 382 273 11 0 chr4 123390438 123390526 -32239594 - B3A SINE B2 -109 89 1 1 1526 1770 65 0 0 chr4 123390552 123390769 -32239351 - L1_Mus1 LINE L1 0 6567 6351 1 1526 1215 41 0 7 chr4 123390847 123390995 -32239125 - B1_Mm SINE Alu 0 147 1 1 1526 194 174 22 0 chr4 123391022 123391068 -32239052 + CT-rich Low_complexity Low_complexity 2 48 0 1 1526 957 147 28 0 chr4 123391078 123391221 -32238899 - B1_Mus2 SINE Alu 0 147 1 1 1526 21 0 0 0 chr4 123391225 123391246 -32238874 + AT_rich Low_complexity Low_complexity 1 21 0 1 1526 541 277 12 36 chr4 123391311 123391476 -32238644 + RSINE1 SINE B4 3 163 -2 1 1526 1953 122 10 0 chr4 123391470 123391782 -32238338 + RLTR15 LTR ERVK 1 315 -44 1 1526 238 115 19 37 chr4 123391801 123391855 -32238265 + A-rich Low_complexity Low_complexity 2 54 0 1 1526 594 224 30 0 chr4 123392047 123392181 -32237939 + B1_Mus1 SINE Alu 10 147 -1 1 1526 745 185 208 0 chr4 123392509 123392687 -32237433 - B3 SINE B2 -1 215 1 1 1526 270 286 29 0 chr4 123392968 123393038 -32237082 + ID4_ SINE ID 1 72 -11 1 1526 408 275 25 0 chr4 123393434 123393554 -32236566 - ID_B1 SINE B4 0 224 102 1 1526 213 53 77 26 chr4 123393696 123393735 -32236385 + A-rich Low_complexity Low_complexity 3 43 0 1 1526 619 251 27 27 chr4 123393884 123394068 -32236052 + B3A SINE B2 3 186 -12 1 1526 1128 58 0 0 chr4 123394095 123394232 -32235888 + B1_Mus1 SINE Alu 3 139 -9 1 1526 25 31 0 0 chr4 123394362 123394394 -32235726 + AT_rich Low_complexity Low_complexity 1 32 0 1 1526 480 18 0 0 chr4 123394786 123394843 -32235277 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1526 417 20 0 0 chr4 123394843 123394892 -32235228 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1526 786 102 76 23 chr4 123395001 123395132 -32234988 + B1_Mur4 SINE Alu 13 150 0 1 1526 511 213 269 18 chr4 123395796 123395963 -32234157 + B3 SINE B2 2 210 -6 1 1526 542 241 0 8 chr4 123395984 123396101 -32234019 + PB1D9 SINE Alu 2 117 -3 1 1526 289 316 20 39 chr4 123396157 123396259 -32233861 + PB1D7 SINE Alu 6 105 -15 1 1526 2301 127 57 3 chr4 123396301 123396673 -32233447 + ORR1B1 LTR MaLR 1 392 -2 1 1526 606 14 0 0 chr4 123397065 123397136 -32232984 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1526 1034 109 6 0 chr4 123397139 123397304 -32232816 - B2_Mm1t SINE B2 -26 167 2 1 1526 1002 33 13 38 chr4 123397432 123397591 -32232529 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1 1526 1105 80 0 0 chr4 123397591 123397729 -32232391 - B1_Mus2 SINE Alu -8 139 2 1 1526 532 206 0 0 chr4 123398565 123398662 -32231458 + B1_Mur2 SINE Alu 37 133 -16 1 1526 211 0 0 81 chr4 123398666 123398703 -32231417 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1526 1129 82 0 7 chr4 123398786 123398934 -32231186 - B1_Mus2 SINE Alu 0 147 1 1 1526 3523 161 165 13 chr4 123398934 123399703 -32230417 - RMER19B LTR ERVK -16 886 1 1 1526 449 253 192 22 chr4 123399712 123399762 -32230358 + ID SINE ID 2 80 -144 1 1526 180 0 0 0 chr4 123399762 123399782 -32230338 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1526 449 253 192 22 chr4 123399782 123399913 -32230207 + ID_B1 SINE B4 81 213 -11 1 1526 3664 44 5 2 chr4 123400441 123400876 -32229244 + RLTR10C LTR ERVK 1 436 0 1 1526 2856 50 3 0 chr4 123400876 123401218 -32228902 + MMERVK10C-int LTR ERVK 1 343 -7238 1 1526 909 148 4 177 chr4 123401216 123401487 -32228633 + MMERVK10C-int LTR ERVK 729 952 -6629 1 1526 661 248 114 59 chr4 123401575 123401944 -32228176 + MMERVK10C-int LTR ERVK 314 819 -4587 1 1526 344 138 17 0 chr4 123401946 123402004 -32228116 + MMERVK10C-int LTR ERVK 1721 1779 -5627 1 1526 419 63 0 0 chr4 123402030 123402093 -32228027 + MMERVK10C-int LTR ERVK 1885 1947 -5634 1 1526 46035 9 4 0 chr4 123402099 123407107 -32223013 + MMERVK10C-int LTR ERVK 2552 7581 0 1 1526 3664 44 5 2 chr4 123407107 123407542 -32222578 + RLTR10C LTR ERVK 1 436 0 1 1526 213 314 90 54 chr4 123407718 123407829 -32222291 - PB1D7 SINE Alu -4 116 2 1 1526 1442 50 44 0 chr4 123407867 123408049 -32222071 + B2_Mm2 SINE B2 1 190 -5 1 1526 233 284 136 0 chr4 123408076 123408164 -32221956 - B3 SINE B2 -19 197 98 1 1526 312 301 36 149 chr4 123408156 123408220 -32221900 - RMER30 DNA MER1_type -26 176 120 1 1526 433 197 189 0 chr4 123408220 123408342 -32221778 + B1_Mur1 SINE Alu 5 149 0 1 1526 312 301 36 149 chr4 123408342 123408370 -32221750 - RMER30 DNA MER1_type -83 119 101 1 1526 736 161 7 65 chr4 123408370 123408523 -32221597 + B1_Mur3 SINE Alu 5 148 -1 1 1526 312 301 36 149 chr4 123408523 123408624 -32221496 - RMER30 DNA MER1_type -102 100 4 1 1526 1502 59 0 5 chr4 123408684 123408870 -32221250 - B2_Mm1a SINE B2 -7 186 2 1 1526 4195 98 96 25 chr4 123408962 123409630 -32220490 - RLTR19B LTR ERVK 0 715 1 1 1526 1461 249 169 67 chr4 123410031 123411234 -32218886 + RMER1B Other Other 7 1015 -15 1 1526 262 222 83 0 chr4 123411256 123411328 -32218792 - B3A SINE B2 -119 79 2 1 1526 364 295 29 0 chr4 123411398 123411503 -32218617 - ID_B1 SINE B4 -109 115 8 1 1526 339 195 0 118 chr4 123411610 123411703 -32218417 + ID4_ SINE ID 2 83 0 1 1526 254 263 0 10 chr4 123411912 123412008 -32218112 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 1 1526 264 199 30 68 chr4 123412009 123412024 -32218096 - B1F SINE Alu -15 134 98 1 1526 352 140 35 0 chr4 123412024 123412081 -32218039 - ID_B1 SINE B4 -22 202 144 1 1526 264 199 30 68 chr4 123412081 123412098 -32218022 - B1F SINE Alu -15 97 48 1 1526 183 100 0 0 chr4 123413740 123413770 -32216350 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1526 1226 78 84 0 chr4 123414251 123414430 -32215690 + B2_Mm2 SINE B2 2 195 0 1 1526 237 305 46 28 chr4 123414570 123414678 -32215442 + MIR SINE MIR 77 186 -76 1 1526 1631 31 0 15 chr4 123414773 123414968 -32215152 + B2_Mm1a SINE B2 2 193 0 1 1526 844 207 10 118 chr4 123414978 123415177 -32214943 - B3 SINE B2 0 216 26 1 1526 446 270 0 20 chr4 123415627 123415729 -32214391 + B1F2 SINE Alu 2 101 -48 1 1526 27 0 0 0 chr4 123416550 123416577 -32213543 + AT_rich Low_complexity Low_complexity 1 27 0 1 1526 216 232 80 50 chr4 123416577 123416677 -32213443 + PB1 SINE Alu 15 125 -2 1 1526 271 290 4 26 chr4 123416799 123416891 -32213229 - B4 SINE B4 -114 178 87 1 1526 315 0 0 0 chr4 123416891 123416926 -32213194 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1526 469 188 19 19 chr4 123416926 123417029 -32213091 - PB1D9 SINE Alu -13 107 5 1 1526 854 208 88 5 chr4 123417300 123417493 -32212627 - ID_B1 SINE B4 -13 211 3 1 1526 422 227 163 8 chr4 123418082 123418211 -32211909 + RSINE1 SINE B4 3 151 -14 1 1526 701 161 62 0 chr4 123418443 123418573 -32211547 + B1_Mur4 SINE Alu 13 150 0 1 1526 954 222 14 28 chr4 123418594 123418807 -32211313 + B3 SINE B2 1 210 -6 1 1526 448 250 91 6 chr4 123418854 123419003 -32211117 - L1MB5 LINE L1 -28 6156 5987 1 1526 972 44 29 0 chr4 123419006 123419143 -32210977 - B1_Mus1 SINE Alu -2 146 6 1 1526 364 217 7 130 chr4 123419035 123419173 -32210947 - MT2B LTR ERVL -337 264 144 1 1526 192 40 0 0 chr4 123419232 123419257 -32210863 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1526 458 231 9 44 chr4 123419271 123419384 -32210736 - B1_Mm SINE Alu -11 136 28 1 1526 1222 41 14 0 chr4 123419429 123419574 -32210546 - B1_Mus2 SINE Alu 0 147 1 1 1526 253 214 54 0 chr4 123419989 123420045 -32210075 + PB1D9 SINE Alu 51 109 -11 1 1526 469 307 63 63 chr4 123420140 123420491 -32209629 + ORR1E LTR MaLR 3 353 -6 1 1526 224 308 25 25 chr4 123420540 123420620 -32209500 - PB1D10 SINE Alu -8 109 30 1 1526 216 261 58 0 chr4 123420934 123421003 -32209117 - ID4 SINE ID -9 74 2 1 1526 219 103 0 0 chr4 123421162 123421201 -32208919 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1526 414 0 0 0 chr4 123421201 123421247 -32208873 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1526 427 239 77 63 chr4 123421435 123421578 -32208542 - ID_B1 SINE B4 0 224 80 1 1526 234 0 0 0 chr4 123421578 123421604 -32208516 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1526 782 148 48 27 chr4 123421900 123422046 -32208074 + B1_Mur3 SINE Alu 1 149 0 1 1526 893 87 0 0 chr4 123422077 123422204 -32207916 + B2_Mm2 SINE B2 2 128 -67 1 1526 442 228 0 21 chr4 123422251 123422345 -32207775 + B3A SINE B2 38 129 -69 1 1526 332 22 22 0 chr4 123422374 123422419 -32207701 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1526 579 212 25 8 chr4 123422484 123422603 -32207517 + ID_B1 SINE B4 99 219 -5 1 1526 500 233 83 0 chr4 123422605 123422738 -32207382 + B1F SINE Alu 1 144 -5 1 1526 793 152 7 0 chr4 123422911 123423049 -32207071 + B1_Mur4 SINE Alu 12 150 0 1 1526 363 96 0 0 chr4 123423055 123423107 -32207013 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1526 227 270 68 0 chr4 123423112 123423186 -32206934 + ID4 SINE ID 3 81 -2 1 1526 350 256 67 104 chr4 123423432 123423567 -32206553 + ID_B1 SINE B4 87 216 -8 1 1526 306 0 0 0 chr4 123424135 123424169 -32205951 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1526 1107 51 0 0 chr4 123424172 123424309 -32205811 - B1_Mus1 SINE Alu -11 137 1 1 1526 284 193 0 50 chr4 123424504 123424564 -32205556 + PB1D9 SINE Alu 37 93 -27 1 1526 253 341 0 42 chr4 123424611 123424706 -32205414 + ID_B1 SINE B4 85 175 -49 1 1526 343 216 118 49 chr4 123424940 123425042 -32205078 - B1_Mus1 SINE Alu -31 117 9 1 1526 1272 34 0 0 chr4 123425242 123425389 -32204731 + B1_Mus2 SINE Alu 1 147 0 1 1526 286 260 0 13 chr4 123425648 123425726 -32204394 - PB1 SINE Alu -7 120 44 1 1526 566 213 49 21 chr4 123425922 123426066 -32204054 + B1F SINE Alu 1 148 -1 1 1526 222 150 0 0 chr4 123428594 123428634 -32201486 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1526 433 312 207 22 chr4 123428942 123429352 -32200768 - L4 LINE RTE -188 1841 1356 1 1526 188 312 37 24 chr4 123429488 123429570 -32200550 + MIRm SINE MIR 194 276 0 1 1526 208 321 9 60 chr4 123429887 123430003 -32200117 - L2c LINE L2 -47 3340 3231 1 1526 410 256 148 8 chr4 123430383 123430505 -32199615 + ID_B1 SINE B4 79 217 -7 1 1526 218 412 0 0 chr4 123430741 123430918 -32199202 + G-rich Low_complexity Low_complexity 4 180 0 1 1526 209 410 0 0 chr4 123431247 123431408 -32198712 + G-rich Low_complexity Low_complexity 6 166 0 1 1526 582 261 64 19 chr4 123431550 123431706 -32198414 - RSINE1 SINE B4 0 165 3 1 1526 586 275 0 7 chr4 123431746 123431885 -32198235 + ID_B1 SINE B4 84 221 -3 1 1526 294 343 0 10 chr4 123431894 123431982 -32198138 - ID_B1 SINE B4 -30 194 108 1 1526 1647 180 101 29 chr4 123431982 123432359 -32197761 + MTB_Mm LTR MaLR 4 407 0 1 1526 294 343 0 10 chr4 123432359 123432373 -32197747 - ID_B1 SINE B4 -117 107 94 1 1526 339 355 0 8 chr4 123432389 123432514 -32197606 - B1F SINE Alu -2 147 24 1 1526 1514 62 5 0 chr4 123432577 123432769 -32197351 + B2_Mm1a SINE B2 1 193 0 1 1526 228 184 0 39 chr4 123432825 123432876 -32197244 - B3 SINE B2 -167 49 1 1 1526 1581 43 27 0 chr4 123432891 123433078 -32197042 - B2_Mm1a SINE B2 -1 192 1 1 1526 287 263 78 78 chr4 123433153 123433256 -32196864 + PB1D10 SINE Alu 6 108 -9 1 1526 772 207 0 0 chr4 123433258 123433393 -32196727 + ID_B1 SINE B4 81 215 -9 1 1526 222 160 56 74 chr4 123433351 123433405 -32196715 + PB1 SINE Alu 75 127 0 1 1526 450 312 22 56 chr4 123433416 123433596 -32196524 + B4A SINE B4 2 175 -117 1 1526 930 163 0 0 chr4 123433639 123433786 -32196334 - B1_Mus2 SINE Alu 0 147 1 1 1526 1448 55 27 0 chr4 123433792 123433975 -32196145 - B2_Mm2 SINE B2 -6 189 2 1 1526 1331 69 46 0 chr4 123433982 123434157 -32195963 - B2_Mm2 SINE B2 -11 184 2 1 1526 22 35 0 0 chr4 123434157 123434186 -32195934 + AT_rich Low_complexity Low_complexity 1 29 0 1 1526 1237 130 11 0 chr4 123434187 123434372 -32195748 + B2_Mm1t SINE B2 1 187 -6 1 1526 1378 72 16 16 chr4 123434501 123434686 -32195434 - B2_Mm2 SINE B2 -9 186 2 1 1526 41 17 0 17 chr4 123434736 123434773 -32195347 + AT_rich Low_complexity Low_complexity 1 37 0 1 1526 1582 11 22 6 chr4 123434773 123434953 -32195167 + B2_Mm1t SINE B2 2 184 -9 1 1526 41 17 0 17 chr4 123434953 123434974 -32195146 + AT_rich Low_complexity Low_complexity 1 21 0 1 1526 550 292 19 38 chr4 123434975 123435135 -32194985 + RSINE1 SINE B4 9 165 0 1 1526 560 286 12 24 chr4 123435292 123435457 -32194663 - RSINE1 SINE B4 0 165 3 1 1526 879 192 128 0 chr4 123436040 123436227 -32193893 + B3 SINE B2 5 215 -1 1 1526 271 250 29 0 chr4 123436335 123436403 -32193717 - ID4_ SINE ID -13 70 1 1 1526 185 154 0 25 chr4 123436504 123436544 -32193576 + T-rich Low_complexity Low_complexity 2 40 0 1 1526 329 296 7 43 chr4 123436544 123436565 -32193555 - ID_B1 SINE B4 0 224 92 1 1526 614 214 8 0 chr4 123436565 123436682 -32193438 - B1_Mur1 SINE Alu -21 128 11 1 1526 269 233 0 16 chr4 123436705 123436766 -32193354 - B4 SINE B4 -18 274 215 1 1526 36 62 0 0 chr4 123436766 123436830 -32193290 + AT_rich Low_complexity Low_complexity 1 64 0 1 1526 934 124 13 40 chr4 123436830 123436981 -32193139 - B1_Mus2 SINE Alu 0 147 1 1 1526 921 257 19 0 chr4 123436990 123437196 -32192924 - B3 SINE B2 -6 210 1 1 1526 802 211 17 59 chr4 123437196 123437433 -32192687 - B4 SINE B4 -65 227 1 1 1526 788 197 143 5 chr4 123437510 123437699 -32192421 + B3 SINE B2 2 216 0 1 1526 703 187 133 55 chr4 123438099 123438254 -32191866 - B3 SINE B2 0 193 39 1 1526 2622 43 71 0 chr4 123438254 123438577 -32191543 + ORR1A1 LTR MaLR 1 346 0 1 1526 703 175 144 46 chr4 123438577 123438619 -32191501 - B3 SINE B2 -174 42 1 1 1526 1652 26 11 0 chr4 123438781 123438971 -32191149 - B2_Mm1a SINE B2 0 193 2 1 1526 1021 102 13 13 chr4 123438971 123439120 -32191000 - B1_Mur4 SINE Alu 0 150 2 1 1526 296 65 43 0 chr4 123439324 123439370 -32190750 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 1526 992 193 30 5 chr4 123439370 123439568 -32190552 - B3 SINE B2 -13 203 1 1 1526 494 256 8 60 chr4 123439572 123439705 -32190415 - ID_B1 SINE B4 -94 130 5 1 1526 375 281 0 11 chr4 123439730 123439820 -32190300 - PB1D10 SINE Alu -11 106 18 1 1526 234 62 0 0 chr4 123439838 123439870 -32190250 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1 1526 627 182 79 0 chr4 123439870 123439996 -32190124 - B1_Mur4 SINE Alu -14 136 1 1 1526 250 267 0 137 chr4 123439891 123440008 -32190112 - MT2B LTR ERVL -344 257 157 1 1526 421 239 18 27 chr4 123440361 123440473 -32189647 + B1F SINE Alu 7 117 -32 1 1526 2315 106 14 104 chr4 123440487 123440920 -32189200 - ORR1B1 LTR MaLR 0 394 1 1 1526 876 183 7 0 chr4 123440982 123441124 -32188996 - B1_Mur1 SINE Alu -6 143 1 1 1526 551 233 54 8 chr4 123441230 123441360 -32188760 + B1F SINE Alu 14 149 0 1 1526 442 320 41 92 chr4 123441414 123441610 -32188510 + B3A SINE B2 1 186 -30 1 1526 342 257 0 0 chr4 123441645 123441719 -32188401 + ID_B1 SINE B4 143 216 -8 1 1526 220 282 0 0 chr4 123441746 123441817 -32188303 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1526 1253 41 0 0 chr4 123441880 123442026 -32188094 + B1_Mm SINE Alu 1 146 -1 1 1526 243 140 0 0 chr4 123442027 123442077 -32188043 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1526 477 236 9 35 chr4 123442359 123442473 -32187647 + B3 SINE B2 27 137 -79 1 1526 276 222 28 0 chr4 123442544 123442616 -32187504 + MER103 DNA DNA 9 82 -84 1 1526 320 269 208 8 chr4 123442701 123442821 -32187299 + B3A SINE B2 27 170 -28 1 1526 559 223 23 3 chr4 123442833 123442975 -32187145 + B1_Mur1 SINE Alu 7 147 -1 1 1526 229 333 12 0 chr4 123443171 123443252 -32186868 - ID4 SINE ID 0 83 2 1 1526 244 171 24 0 chr4 123443348 123443389 -32186731 - B1F2 SINE Alu -106 43 2 1 1526 426 293 84 88 chr4 123443459 123443721 -32186399 + RMER5 LTR ERV1 15 275 -259 1 1526 497 108 0 0 chr4 123443723 123443806 -32186314 + L1Md_F2 LINE L1 6500 6582 0 1 1526 323 220 116 85 chr4 123443834 123443852 -32186268 + L1MCa LINE L1 1827 1850 -4658 1 1526 1705 26 0 0 chr4 123443852 123444044 -32186076 - B2_Mm1a SINE B2 0 193 2 1 1526 323 220 116 85 chr4 123444044 123444154 -32185966 + L1MCa LINE L1 1851 1958 -4550 1 1526 529 197 93 16 chr4 123444276 123444405 -32185715 - B1F SINE Alu -10 139 1 1 1526 620 150 110 83 chr4 123444445 123444590 -32185530 - B1_Mur2 SINE Alu 0 149 1 1 1526 2787 121 70 15 chr4 123444858 123445329 -32184791 - RLTR28 LTR ERVL -27 497 1 1 1526 807 243 59 0 chr4 123445343 123445512 -32184608 + B3A SINE B2 14 192 -6 1 1526 259 157 35 35 chr4 123445553 123445639 -32184481 + CT-rich Low_complexity Low_complexity 4 89 0 1 1526 640 291 13 13 chr4 123445976 123446126 -32183994 - RSINE1 SINE B4 -12 153 4 1 1526 306 0 0 0 chr4 123446137 123446171 -32183949 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1526 337 274 83 0 chr4 123446198 123446282 -32183838 - B1_Mm SINE Alu -56 91 1 1 1526 462 143 0 0 chr4 123446467 123446544 -32183576 + (ATGGTG)n Simple_repeat Simple_repeat 3 79 0 1 1526 766 43 0 0 chr4 123446661 123446754 -32183366 + BC1_Mm scRNA scRNA 1 93 -59 1 1526 216 0 0 0 chr4 123447241 123447265 -32182855 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1526 1056 95 14 0 chr4 123447388 123447535 -32182585 - B1_Mur4 SINE Alu 0 150 2 1 1526 272 100 0 107 chr4 123447704 123447760 -32182360 - B1_Mm SINE Alu -2 145 96 1 1526 3071 9 3 0 chr4 123448020 123448356 -32181764 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1526 57011 22 13 5 chr4 123448356 123454781 -32175339 - IAPEz-int LTR ERVK 0 6481 8 1 1526 3082 6 3 0 chr4 123454781 123455117 -32175003 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1526 505 301 101 15 chr4 123455473 123455672 -32174448 - ID_B1 SINE B4 -5 219 4 1 1526 2307 134 43 5 chr4 123456729 123457104 -32173016 - ORR1B1 LTR MaLR 0 394 6 1 1526 512 277 59 0 chr4 123457374 123457493 -32172627 + RSINE1 SINE B4 5 130 -35 1 1526 231 36 0 0 chr4 123457508 123457536 -32172584 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1526 818 255 58 0 chr4 123457562 123457749 -32172371 + B4A SINE B4 1 198 -94 1 1526 1110 106 0 101 chr4 123457749 123457948 -32172172 + B2_Mm2 SINE B2 3 181 -14 1 1526 371 91 0 18 chr4 123457999 123458055 -32172065 + B2_Mm2 SINE B2 47 101 -94 1 1526 264 100 0 39 chr4 123458054 123458106 -32172014 + B2_Mm1t SINE B2 138 187 -6 1 1526 331 250 163 77 chr4 123458107 123458257 -32171863 + B4A SINE B4 46 230 -62 1 1526 210 71 0 0 chr4 123458257 123458285 -32171835 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1526 331 281 249 30 chr4 123458285 123458345 -32171775 + B4A SINE B4 231 290 -2 1 1526 228 346 28 56 chr4 123458325 123458432 -32171688 - RMER12 LTR ERVK -474 848 745 1 1526 691 153 0 9 chr4 123458528 123458650 -32171470 + B1_Mur4 SINE Alu 1 120 0 1 1526 213 245 0 0 chr4 123458696 123458745 -32171375 + A-rich Low_complexity Low_complexity 1 49 0 1 1526 925 61 120 8 chr4 123458831 123458964 -32171156 - B1_Mus1 SINE Alu 0 148 1 1 1526 202 268 0 0 chr4 123459662 123459703 -32170417 + C-rich Low_complexity Low_complexity 3 43 0 1 1526 1243 114 11 0 chr4 123459752 123459928 -32170192 + B2_Mm1t SINE B2 2 179 -14 1 1526 326 80 327 18 chr4 123459975 123460088 -32170032 + B2_Mm2 SINE B2 47 194 -1 1 1526 315 0 0 0 chr4 123460375 123460410 -32169710 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 1 1526 1095 136 11 11 chr4 123460689 123460867 -32169253 - B2_Mm1t SINE B2 -14 179 2 1 1526 1544 53 16 0 chr4 123460877 123461066 -32169054 - B2_Mm1t SINE B2 -1 192 1 1 1526 1150 95 0 0 chr4 123461210 123461357 -32168763 + B1_Mus1 SINE Alu 2 148 0 1 1526 659 201 69 62 chr4 123461615 123461849 -32168271 - B3A SINE B2 -1 215 1 1 1526 261 119 0 0 chr4 123462064 123462106 -32168014 + (CATA)n Simple_repeat Simple_repeat 4 45 0 1 1526 1309 193 332 12 chr4 123462134 123462538 -32167582 - MT2A LTR ERVL 0 533 1 1 1526 575 193 9 17 chr4 123462602 123462718 -32167402 - B3 SINE B2 -1 215 101 1 1526 876 82 217 48 chr4 123462716 123462762 -32167358 - B2_Mm2 SINE B2 -1 194 155 1 1526 3958 45 19 0 chr4 123462762 123463228 -32166892 - MT2C_Mm LTR ERVL 0 475 1 1 1526 876 82 217 48 chr4 123463228 123463347 -32166773 - B2_Mm2 SINE B2 -41 154 1 1 1526 251 289 0 46 chr4 123463392 123463479 -32166641 - ID4 SINE ID 0 83 1 1 1526 443 286 0 51 chr4 123463479 123463574 -32166546 - PB1D10 SINE Alu -1 116 27 1 1526 2292 138 10 43 chr4 123463574 123463969 -32166151 + RLTR14 LTR ERV1 1 382 0 1 1526 443 286 0 51 chr4 123463969 123463991 -32166129 - PB1D10 SINE Alu -91 26 5 1 1526 423 0 0 0 chr4 123464124 123464171 -32165949 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1526 243 235 221 0 chr4 123464222 123464290 -32165830 + ID4 SINE ID 1 83 0 1 1526 315 122 0 0 chr4 123465574 123465623 -32164497 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1526 183 171 29 0 chr4 123466013 123466048 -32164072 + MIR SINE MIR 104 139 -69 1 1526 597 205 17 43 chr4 123466442 123466559 -32163561 - B1F2 SINE Alu 0 149 36 1 1526 299 203 205 2 chr4 123466903 123466981 -32163139 + PB1D10 SINE Alu 23 126 -1 1 1526 288 0 0 0 chr4 123467225 123467257 -32162863 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1 1526 658 245 14 0 chr4 123467306 123467453 -32162667 + B1F SINE Alu 1 149 0 1 1526 411 293 116 29 chr4 123467989 123468161 -32161959 + B4A SINE B4 1 187 -105 1 1526 691 224 85 0 chr4 123468178 123468343 -32161777 + MTEa LTR MaLR 201 379 0 1 1526 2739 94 74 5 chr4 123468357 123468751 -32161369 - MTC LTR MaLR 0 421 1 1 1526 1262 77 6 0 chr4 123468854 123469024 -32161096 - B2_Mm1t SINE B2 -21 172 2 1 1526 195 162 0 0 chr4 123469108 123469145 -32160975 + CT-rich Low_complexity Low_complexity 4 40 0 1 1526 529 224 188 79 chr4 123469147 123469312 -32160808 + ID_B1 SINE B4 33 215 -9 1 1526 729 223 54 12 chr4 123469300 123469468 -32160652 - MTE2b LTR MaLR -204 175 1 1 1526 881 151 7 21 chr4 123469507 123469649 -32160471 - B1_Mur4 SINE Alu -10 140 1 1 1526 187 231 0 0 chr4 123469660 123469699 -32160421 - MIR SINE MIR -122 140 102 1 1527 378 325 148 39 chr4 123469901 123470314 -32159806 - L2a LINE L2 -20 3367 2910 1 1527 256 295 53 13 chr4 123470355 123470443 -32159677 - ID4 SINE ID -59 93 3 1 1527 2123 217 13 44 chr4 123470634 123471155 -32158965 - RLTR16 LTR ERVK 0 505 1 1 1527 270 362 147 14 chr4 123471398 123471541 -32158579 - MLT1H1 LTR MaLR -393 162 1 1 1527 272 200 15 37 chr4 123471869 123472004 -32158116 + CT-rich Low_complexity Low_complexity 5 136 0 1 1527 258 258 0 50 chr4 123472027 123472094 -32158026 - B4A SINE B4 -146 146 82 1 1527 2406 169 3 3 chr4 123472225 123472600 -32157520 - RLTR14 LTR ERV1 0 382 8 1 1527 369 276 118 69 chr4 123472616 123472760 -32157360 + B3A SINE B2 48 198 0 1 1527 646 205 28 16 chr4 123472766 123472956 -32157164 + B3 SINE B2 1 195 0 1 1527 421 256 0 0 chr4 123472970 123473060 -32157060 + B1_Mur4 SINE Alu 61 150 0 1 1527 672 208 72 2 chr4 123473095 123473236 -32156884 + ID_B1 SINE B4 86 237 -55 1 1527 653 186 139 35 chr4 123473237 123473410 -32156710 + B4 SINE B4 94 284 -8 1 1527 667 157 107 1 chr4 123473511 123473640 -32156480 - B1_Mus1 SINE Alu -5 143 1 1 1527 1069 75 0 0 chr4 123473906 123474039 -32156081 - B1_Mus1 SINE Alu -15 133 1 1 1527 622 297 7 7 chr4 123474074 123474213 -32155907 + B3 SINE B2 16 154 -62 1 1527 417 185 12 0 chr4 123474195 123474276 -32155844 - B3 SINE B2 -134 82 1 1 1527 531 276 21 7 chr4 123474292 123474434 -32155686 - B1F1 SINE Alu -5 144 1 1 1527 378 0 0 0 chr4 123475770 123475812 -32154308 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1527 1403 164 0 0 chr4 123475877 123476085 -32154035 + B3 SINE B2 1 208 -8 1 1527 702 91 0 0 chr4 123476091 123476190 -32153930 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1527 294 302 118 26 chr4 123476193 123476346 -32153774 + MIRb SINE MIR 14 180 -88 1 1527 541 261 8 8 chr4 123476350 123476470 -32153650 + PB1D7 SINE Alu 1 120 0 1 1527 737 325 75 36 chr4 123476485 123476763 -32153357 + B4A SINE B4 4 292 0 1 1527 426 39 0 0 chr4 123476763 123476815 -32153305 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1527 414 0 0 0 chr4 123476815 123476860 -32153260 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1527 935 80 16 0 chr4 123477052 123477177 -32152943 + B1_Mus1 SINE Alu 22 148 0 1 1527 343 215 74 21 chr4 123477214 123477309 -32152811 - ORR1E LTR MaLR -107 252 153 1 1527 621 290 0 0 chr4 123477339 123477470 -32152650 + B1_Mur1 SINE Alu 3 133 -16 1 1527 243 0 0 0 chr4 123477473 123477500 -32152620 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1527 958 124 214 6 chr4 123477663 123477841 -32152279 + B3 SINE B2 2 216 0 1 1527 290 303 13 0 chr4 123478123 123478199 -32151921 + ID SINE ID 4 80 -144 1 1527 1215 48 0 13 chr4 123478375 123478524 -32151596 - B1_Mus2 SINE Alu 0 147 1 1 1527 305 318 123 7 chr4 123478536 123478691 -32151429 + Tigger12c DNA MER2_type 373 545 -189 1 1527 335 263 143 8 chr4 123478715 123478834 -32151286 + B4A SINE B4 72 206 -86 1 1527 349 287 25 21 chr4 123478828 123478959 -32151161 + B4 SINE B4 8 135 -157 1 1527 252 281 48 68 chr4 123478971 123479074 -32151046 + B4 SINE B4 192 292 0 1 1527 770 131 65 7 chr4 123479166 123479304 -32150816 + B1_Mur3 SINE Alu 4 149 0 1 1527 226 196 0 38 chr4 123479385 123479438 -32150682 + GA-rich Low_complexity Low_complexity 2 52 0 1 1527 234 327 75 52 chr4 123479445 123479619 -32150501 - Tigger12A DNA MER2_type -4 787 610 1 1527 482 242 30 0 chr4 123479887 123479986 -32150134 - RSINE1 SINE B4 -29 136 35 1 1527 612 224 105 86 chr4 123480047 123480257 -32149863 - B3 SINE B2 0 216 3 1 1527 222 260 186 59 chr4 123480376 123480478 -32149642 - PB1D10 SINE Alu -2 115 1 1 1527 454 216 41 0 chr4 123480602 123480699 -32149421 - PB1D10 SINE Alu -7 110 10 1 1527 261 260 96 0 chr4 123480732 123480805 -32149315 + B1F SINE Alu 1 80 -68 1 1527 378 0 0 0 chr4 123480896 123480938 -32149182 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1527 460 296 20 52 chr4 123481252 123481405 -32148715 + B1F SINE Alu 1 148 -1 1 1527 789 174 35 0 chr4 123481577 123481721 -32148399 + B1_Mur2 SINE Alu 1 149 0 1 1527 1015 196 15 15 chr4 123481788 123481985 -32148135 + B3 SINE B2 2 198 -18 1 1527 238 213 0 0 chr4 123482028 123482075 -32148045 - L1M3 LINE L1 -433 5750 5704 1 1527 482 213 21 31 chr4 123482181 123482278 -32147842 - B1_Mur4 SINE Alu -53 97 2 1 1527 664 236 7 35 chr4 123482309 123482454 -32147666 - RSINE1 SINE B4 -14 151 11 1 1527 1943 178 67 5 chr4 123483069 123483441 -32146679 - MTD LTR MaLR -12 407 13 1 1527 397 205 71 12 chr4 123483771 123483855 -32146265 + B1F SINE Alu 50 138 -11 1 1527 429 109 0 0 chr4 123484192 123484256 -32145864 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1 1527 215 318 30 15 chr4 123484268 123484335 -32145785 - MIR SINE MIR -3 259 192 1 1527 782 263 183 42 chr4 123484398 123484878 -32145242 + L1MB4 LINE L1 5593 6140 -40 1 1527 1079 108 39 28 chr4 123484879 123485060 -32145060 + B2_Mm2 SINE B2 2 184 -11 1 1527 780 147 103 0 chr4 123485076 123485212 -32144908 + B1_Mur4 SINE Alu 1 150 0 1 1527 425 19 19 0 chr4 123485245 123485299 -32144821 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1 1527 219 36 0 0 chr4 123485306 123485334 -32144786 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 1 1527 263 303 15 0 chr4 123485335 123485401 -32144719 - RSINE1 SINE B4 -64 101 35 1 1527 1335 86 21 0 chr4 123485440 123485626 -32144494 - B2_Mm1t SINE B2 -2 191 2 1 1527 627 272 72 5 chr4 123485787 123485994 -32144126 - ID_B1 SINE B4 -3 221 1 1 1527 298 274 107 0 chr4 123486097 123486181 -32143939 - ID_B1 SINE B4 -13 211 119 1 1527 494 294 0 45 chr4 123486244 123486376 -32143744 - RSINE1 SINE B4 -37 128 3 1 1527 1143 29 0 7 chr4 123486448 123486589 -32143531 + B1_Mus2 SINE Alu 8 147 0 1 1527 23 33 0 0 chr4 123486607 123486637 -32143483 + AT_rich Low_complexity Low_complexity 1 30 0 1 1527 273 29 0 0 chr4 123486672 123486706 -32143414 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1527 396 0 0 0 chr4 123486706 123486749 -32143371 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1527 1080 45 0 0 chr4 123486798 123486932 -32143188 + B1_Mus2 SINE Alu 6 139 -8 1 1527 234 227 21 64 chr4 123487191 123487285 -32142835 + GA-rich Low_complexity Low_complexity 2 91 0 1 1527 591 289 0 0 chr4 123487725 123487874 -32142246 - B1F SINE Alu 0 149 1 1 1527 191 330 32 64 chr4 123488010 123488104 -32142016 - MIR3 SINE MIR -28 180 90 1 1527 314 355 97 44 chr4 123488390 123488546 -32141574 - MLT2D LTR ERVL -163 251 79 1 1527 447 217 82 16 chr4 123488546 123488668 -32141452 + B1F SINE Alu 5 134 -15 1 1527 314 355 97 44 chr4 123488668 123488738 -32141382 - MLT2D LTR ERVL -336 78 14 1 1527 727 279 111 5 chr4 123489225 123489441 -32140679 + ID_B1 SINE B4 6 246 -46 1 1527 399 113 0 0 chr4 123489441 123489503 -32140617 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 1 1527 758 236 70 21 chr4 123489672 123489858 -32140262 - B3A SINE B2 0 198 4 1 1527 699 286 10 77 chr4 123489887 123490095 -32140025 - B3A SINE B2 -4 194 1 1 1527 1452 242 3 14 chr4 123490144 123490437 -32139683 + B4 SINE B4 1 290 -2 1 1527 1202 159 19 9 chr4 123490482 123490692 -32139428 - B3 SINE B2 0 216 5 1 1527 1005 247 97 43 chr4 123490789 123491182 -32138938 - L1MD3 LINE L1 -164 7831 7418 1 1527 451 255 49 21 chr4 123491689 123491833 -32138287 + B1F2 SINE Alu 2 149 0 1 1527 594 204 37 9 chr4 123491848 123491957 -32138163 + RSINE1 SINE B4 11 122 -43 1 1527 282 310 45 78 chr4 123491950 123491961 -32138159 + MT2B LTR ERVL 120 129 -472 1 1527 351 0 0 0 chr4 123491961 123492000 -32138120 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1527 282 310 45 78 chr4 123492000 123492032 -32138088 + MT2B LTR ERVL 130 158 -443 1 1527 623 206 30 0 chr4 123492032 123492163 -32137957 + B1_Mur1 SINE Alu 1 135 -14 1 1527 306 304 91 42 chr4 123492043 123492208 -32137912 + B4A SINE B4 97 269 -23 1 1527 465 304 19 25 chr4 123492618 123492780 -32137340 + B4A SINE B4 91 251 -41 1 1527 405 0 0 0 chr4 123492810 123492855 -32137265 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1527 919 166 0 0 chr4 123492940 123493085 -32137035 - B1_Mur4 SINE Alu -5 145 1 1 1527 3092 35 173 0 chr4 123493487 123493892 -32136228 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1527 23 0 0 0 chr4 123493912 123493935 -32136185 + AT_rich Low_complexity Low_complexity 1 23 0 1 1527 832 207 7 0 chr4 123493935 123494080 -32136040 - B1_Mur1 SINE Alu -3 146 1 1 1527 474 101 0 0 chr4 123494163 123494232 -32135888 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 1 1527 1290 95 0 10 chr4 123494242 123494434 -32135686 - B2_Mm2 SINE B2 0 195 6 1 1527 748 152 47 23 chr4 123494500 123494628 -32135492 + B1_Mur3 SINE Alu 10 140 -9 1 1527 333 326 0 10 chr4 123494765 123494861 -32135259 + B3A SINE B2 1 95 -103 1 1527 562 153 18 0 chr4 123494886 123494997 -32135123 + CT-rich Low_complexity Low_complexity 2 114 0 1 1527 899 196 220 25 chr4 123495519 123495677 -32134443 - MTB_Mm LTR MaLR -119 288 85 1 1527 1567 52 5 0 chr4 123495677 123495868 -32134252 - B2_Mm1t SINE B2 0 193 2 1 1527 1141 52 0 0 chr4 123495868 123496003 -32134117 - B1_Mus2 SINE Alu -11 136 1 1 1527 899 196 220 25 chr4 123496003 123496084 -32134036 - MTB_Mm LTR MaLR -323 84 2 1 1527 200 167 21 0 chr4 123496227 123496275 -32133845 + CT-rich Low_complexity Low_complexity 2 50 0 1 1527 777 51 0 0 chr4 123496277 123496375 -32133745 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1 1527 306 35 105 0 chr4 123496375 123496432 -32133688 + (CCCCCT)n Simple_repeat Simple_repeat 2 64 0 1 1527 389 264 45 13 chr4 123497385 123497525 -32132595 - L1M5 LINE L1 -2254 3892 3746 1 1527 1416 76 16 0 chr4 123497525 123497709 -32132411 - B2_Mm2 SINE B2 -7 188 2 1 1527 389 256 45 96 chr4 123497709 123497751 -32132369 - L1M5 LINE L1 -2401 3745 3714 1 1527 524 171 0 9 chr4 123497839 123497951 -32132169 + CT-rich Low_complexity Low_complexity 2 112 0 1 1527 310 188 87 0 chr4 123498185 123498254 -32131866 - ID4_ SINE ID -7 76 2 1 1527 470 308 68 0 chr4 123498289 123498435 -32131685 + ID_B1 SINE B4 68 223 -1 1 1527 229 242 16 0 chr4 123498454 123498516 -32131604 - L1M5 LINE L1 -2602 3544 3482 1 1527 554 274 55 33 chr4 123498516 123498697 -32131423 - B2_Mm2 SINE B2 -10 185 1 1 1527 1190 44 0 0 chr4 123498873 123499010 -32131110 + B1_Mus2 SINE Alu 1 137 -10 1 1527 231 61 0 0 chr4 123499010 123499043 -32131077 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1527 568 248 103 7 chr4 123499208 123499354 -32130766 - RSINE1 SINE B4 0 165 6 1 1527 303 213 0 0 chr4 123499573 123499648 -32130472 + CT-rich Low_complexity Low_complexity 2 76 0 1 1527 632 184 0 9 chr4 123499666 123499776 -32130344 - PB1D9 SINE Alu -11 109 1 1 1527 427 263 27 95 chr4 123500122 123500269 -32129851 - ID_B1 SINE B4 -7 217 81 1 1527 1252 48 0 0 chr4 123500291 123500438 -32129682 - B1_Mus2 SINE Alu 0 147 1 2 1527 664 214 39 107 chr4 123500445 123500623 -32129497 - B3 SINE B2 -6 210 45 3 1527 1180 68 0 0 chr4 123500870 123501018 -32129102 + B2_Mm2 SINE B2 2 149 -46 4 1527 330 26 0 0 chr4 123501018 123501057 -32129063 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1527 315 0 0 0 chr4 123501088 123501123 -32128997 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1527 517 216 157 7 chr4 123501138 123501278 -32128842 + RSINE1 SINE B4 5 165 0 7 1527 942 136 20 0 chr4 123501706 123501853 -32128267 + B1_Mur4 SINE Alu 1 150 0 8 1527 830 180 12 0 chr4 123501888 123502060 -32128060 + GA-rich Low_complexity Low_complexity 3 176 0 9 1527 466 274 21 49 chr4 123502469 123502611 -32127509 - ID_B1 SINE B4 -86 138 1 1 1527 204 301 138 11 chr4 123502629 123502723 -32127397 + L2 LINE L2 2699 2804 -615 1 1527 306 250 100 147 chr4 123502879 123502989 -32127131 - MER5A DNA MER1_type -25 164 55 1 1527 584 292 7 7 chr4 123502989 123503137 -32126983 + B1F SINE Alu 2 149 0 1 1527 306 250 100 147 chr4 123503137 123503176 -32126944 - MER5A DNA MER1_type -135 54 22 1 1527 615 298 0 0 chr4 123503296 123503437 -32126683 + RSINE1 SINE B4 5 145 -20 1 1527 591 71 0 0 chr4 123503440 123503525 -32126595 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1527 414 191 229 0 chr4 123503678 123503783 -32126337 - B1F2 SINE Alu -19 130 2 1 1527 317 282 24 49 chr4 123504221 123504303 -32125817 - RSINE1 SINE B4 -8 157 78 1 1527 468 307 0 85 chr4 123504298 123504451 -32125669 - B4 SINE B4 -152 140 1 1 1527 484 236 18 35 chr4 123504518 123504632 -32125488 + ID_B1 SINE B4 105 216 -8 1 1527 383 243 39 10 chr4 123504802 123504906 -32125214 + B4A SINE B4 83 189 -103 2 1527 471 150 62 0 chr4 123504904 123504984 -32125136 + B1_Mur2 SINE Alu 23 107 -42 2 1527 567 0 0 0 chr4 123504988 123505051 -32125069 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1527 434 246 80 141 chr4 123505051 123505164 -32124956 + B4 SINE B4 195 292 0 2 1527 383 288 164 33 chr4 123505387 123505509 -32124611 + ID_B1 SINE B4 81 218 -6 2 1527 537 108 48 0 chr4 123505551 123505634 -32124486 + B1_Mur3 SINE Alu 50 136 -13 2 1527 531 236 0 9 chr4 123505985 123506096 -32124024 + PB1D7 SINE Alu 10 119 -1 2 1527 641 107 16 24 chr4 123506096 123506220 -32123900 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2 1527 333 267 81 68 chr4 123506236 123506397 -32123723 + RSINE1 SINE B4 3 165 0 2 1527 914 99 56 21 chr4 123506435 123506579 -32123541 - B1_Mur4 SINE Alu 0 150 2 2 1527 1133 66 0 0 chr4 123507001 123507138 -32122982 + B1_Mus2 SINE Alu 3 139 -8 3 1527 291 342 8 70 chr4 123507465 123507594 -32122526 - PB1 SINE Alu -4 123 3 3 1527 863 156 0 21 chr4 123507710 123507854 -32122266 - B1_Mur3 SINE Alu -7 142 2 3 1527 747 235 149 5 chr4 123507859 123508047 -32122073 - B3 SINE B2 -1 215 1 3 1527 279 190 0 0 chr4 123508267 123508325 -32121795 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1527 1157 83 65 40 chr4 123508400 123508601 -32121519 - Lx LINE L1 0 6654 6449 3 1527 280 335 30 59 chr4 123508858 123509061 -32121059 + RMER2 LTR ERV1 371 567 0 3 1527 371 299 0 0 chr4 123509061 123509148 -32120972 - RSINE1 SINE B4 -76 89 3 3 1527 290 242 0 0 chr4 123509174 123509236 -32120884 - ORR1D2 LTR MaLR -51 319 258 3 1527 533 219 70 0 chr4 123509237 123509365 -32120755 - L1_Rod LINE L1 -3774 2073 1937 3 1527 988 103 45 84 chr4 123509369 123509384 -32120736 - B2_Mm2 SINE B2 -1 194 180 4 1527 2212 82 82 66 chr4 123509384 123509763 -32120357 - Lx3B LINE L1 -4 6969 6585 4 1527 988 103 45 84 chr4 123509763 123509949 -32120171 - B2_Mm2 SINE B2 -16 179 2 4 1527 517 316 78 44 chr4 123509949 123510154 -32119966 - B4A SINE B4 -77 215 4 4 1527 514 244 90 51 chr4 123510312 123510489 -32119631 - B3A SINE B2 -14 184 1 4 1527 660 186 42 8 chr4 123510515 123510634 -32119486 - B1_Mur3 SINE Alu -25 124 2 4 1527 365 252 19 97 chr4 123510634 123510671 -32119449 - MT2B LTR ERVL -442 159 135 4 1527 538 248 71 0 chr4 123510697 123510810 -32119310 - B3 SINE B2 -94 122 2 4 1527 1024 124 18 24 chr4 123511163 123511328 -32118792 - B2_Mm2 SINE B2 -30 165 2 4 1527 225 221 186 21 chr4 123512003 123512100 -32118020 + L4 LINE RTE 533 645 -1384 4 1527 796 176 15 7 chr4 123512436 123512573 -32117547 + B1_Mur1 SINE Alu 2 139 -10 4 1527 856 30 0 0 chr4 123512591 123512692 -32117428 + B1_Mm SINE Alu 46 146 -1 5 1527 286 220 0 0 chr4 123513157 123513216 -32116904 - B3A SINE B2 -85 113 55 5 1527 249 108 0 0 chr4 123514544 123514581 -32115539 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1527 192 77 0 0 chr4 123516975 123517001 -32113119 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1527 322 169 46 0 chr4 123519709 123519774 -32110346 - RMER5 LTR ERV1 -264 270 203 5 1527 627 159 172 63 chr4 123519801 123519975 -32110145 - B2_Mm2 SINE B2 0 195 3 5 1527 876 228 39 19 chr4 123519996 123520202 -32109918 - B3 SINE B2 -6 210 1 5 1527 469 273 92 18 chr4 123520222 123520386 -32109734 - RMER5 LTR ERV1 -348 186 11 5 1527 282 250 94 62 chr4 123520566 123520602 -32109518 + MT2B LTR ERVL 126 165 -436 5 1527 480 212 115 0 chr4 123520602 123520715 -32109405 + B1_Mur4 SINE Alu 1 126 -24 5 1527 277 307 110 81 chr4 123520694 123520770 -32109350 + B4 SINE B4 46 255 -37 5 1527 2079 130 252 26 chr4 123520743 123521200 -32108920 - RLTR6_Mm LTR ERV1 -58 596 37 6 1527 242 198 191 82 chr4 123521202 123521312 -32108808 - RLTR6_Mm LTR ERV1 -532 122 1 6 1527 62649 34 12 8 chr4 123521312 123528946 -32101174 - RLTR6-int LTR ERV1 0 7778 1 6 1527 2188 125 244 28 chr4 123528946 123529414 -32100706 - RLTR6_Mm LTR ERV1 -49 605 37 6 1527 242 198 191 82 chr4 123529416 123529526 -32100594 - RLTR6_Mm LTR ERV1 -532 122 1 6 1527 2646 129 11 53 chr4 123529555 123530004 -32100116 + RLTR23 LTR ERV1 1 430 0 6 1527 655 128 0 0 chr4 123530124 123530218 -32099902 + MTC LTR MaLR 1 94 -327 6 1527 1058 38 8 0 chr4 123530220 123530352 -32099768 + B2_Mm2 SINE B2 21 153 -42 6 1527 379 236 129 92 chr4 123530324 123530354 -32099766 + MTC LTR MaLR 16 41 -355 6 1527 324 0 0 0 chr4 123530354 123530390 -32099730 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1527 750 148 30 11 chr4 123530390 123530522 -32099598 + MTC LTR MaLR 42 202 -219 6 1527 268 167 167 0 chr4 123530520 123530577 -32099543 + RLTR11B LTR ERVK 59 125 -328 6 1527 2442 155 99 20 chr4 123530577 123531064 -32099056 + RLTR11A2 LTR ERVK 1 525 -2 7 1527 1833 177 124 58 chr4 123531076 123531224 -32098896 + MTC-int LTR MaLR 1 152 -1106 7 1527 1074 74 7 0 chr4 123531224 123531359 -32098761 + B1_Mm SINE Alu 1 136 -11 7 1527 228 35 0 0 chr4 123531359 123531388 -32098732 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1527 1833 177 124 58 chr4 123531388 123531688 -32098432 + MTC-int LTR MaLR 153 479 -779 7 1527 765 202 37 27 chr4 123531755 123531943 -32098177 + RLTRETN_Mm LTR ERVK 133 322 0 7 1527 3320 154 121 57 chr4 123531943 123532408 -32097712 + MTC-int LTR MaLR 473 999 -259 7 1527 1443 39 39 0 chr4 123532408 123532586 -32097534 + B2_Mm2 SINE B2 2 186 -9 7 1527 3320 154 121 57 chr4 123532586 123532858 -32097262 + MTC-int LTR MaLR 1000 1257 -1 7 1527 351 169 85 0 chr4 123532859 123532918 -32097202 + MTC LTR MaLR 1 64 -357 7 1527 1145 49 0 0 chr4 123532920 123533062 -32097058 + B1_Mus1 SINE Alu 7 148 0 7 1527 237 178 0 0 chr4 123533062 123533107 -32097013 + A-rich Low_complexity Low_complexity 1 45 0 7 1527 795 160 33 7 chr4 123533118 123533269 -32096851 + MTC LTR MaLR 58 212 -209 7 1527 257 179 125 0 chr4 123533244 123533300 -32096820 + MTC LTR MaLR 35 97 -324 7 1527 6188 115 11 78 chr4 123533392 123533407 -32096713 - RLTR21 LTR ERVK -270 1302 1288 7 1527 261 0 0 0 chr4 123533407 123533436 -32096684 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1527 6188 115 11 78 chr4 123533436 123533693 -32096427 - RLTR21 LTR ERVK -285 1287 1094 7 1527 306 125 0 0 chr4 123533693 123533741 -32096379 + (CATA)n Simple_repeat Simple_repeat 3 50 0 8 1527 6188 115 11 78 chr4 123533741 123534560 -32095560 - RLTR21 LTR ERVK -479 1093 283 7 1527 902 274 135 48 chr4 123534731 123535259 -32094861 - RMER13A LTR ERVK -26 601 2 8 1527 2135 138 3 12 chr4 123535259 123535581 -32094539 - RLTR21 LTR ERVK -1253 319 1 8 1527 581 214 19 0 chr4 123535581 123535683 -32094437 - B3A SINE B2 -93 105 2 8 1527 853 318 77 52 chr4 123535870 123536275 -32093845 + MT2A LTR ERVL 1 415 -118 8 1527 344 135 0 0 chr4 123536276 123536328 -32093792 - HAL1-3A_ME LINE L1 -831 2027 1976 8 1527 183 203 0 0 chr4 123536348 123536407 -32093713 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1527 434 314 62 50 chr4 123536410 123536571 -32093549 - RSINE1 SINE B4 0 165 3 8 1527 1628 189 273 47 chr4 123538719 123539385 -32090735 + RMER6C LTR ERVK 1 697 -59 8 1527 3488 32 0 130 chr4 123539851 123540352 -32089768 - RLTR10C LTR ERVK 0 436 1 8 1527 44729 21 0 10 chr4 123540352 123545435 -32084685 - MMERVK10C-int LTR ERVK 0 7581 2552 8 1527 379 95 0 0 chr4 123545441 123545504 -32084616 - MMERVK10C-int LTR ERVK -5634 1947 1885 8 1527 309 175 0 0 chr4 123545509 123545566 -32084554 - MMERVK10C-int LTR ERVK -4261 1145 1089 8 1527 777 210 208 47 chr4 123545571 123545938 -32084182 - MMERVK10C-int LTR ERVK -4587 819 312 8 1527 757 189 3 26 chr4 123546030 123546288 -32083832 - MMERVK10C-int LTR ERVK -6629 952 729 9 1527 2882 52 0 0 chr4 123546286 123546629 -32083491 - MMERVK10C-int LTR ERVK -7238 343 1 9 1527 3488 32 0 130 chr4 123546629 123547130 -32082990 - RLTR10C LTR ERVK 0 436 1 9 1527 573 182 91 0 chr4 123547887 123547997 -32082123 - B1_Mus1 SINE Alu -24 124 5 9 1527 974 128 13 51 chr4 123548201 123548357 -32081763 - B1_Mur4 SINE Alu 0 150 1 9 1527 895 226 71 151 chr4 123548509 123548920 -32081200 - MTE2a LTR MaLR -1 378 1 9 1527 620 205 17 8 chr4 123548946 123549064 -32081056 - PB1D9 SINE Alu -1 119 1 9 1527 442 179 222 19 chr4 123549159 123549267 -32080853 - B1_Mur1 SINE Alu -17 132 3 9 1527 1536 166 111 42 chr4 123549285 123549644 -32080476 - ORR1C2 LTR MaLR 0 384 1 9 1527 1052 102 0 0 chr4 123549692 123549829 -32080291 + B1_Mus2 SINE Alu 2 138 -9 9 1527 183 42 0 0 chr4 123549829 123549853 -32080267 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1527 811 176 65 98 chr4 123549858 123550072 -32080048 - B3 SINE B2 -8 208 2 9 1527 333 148 0 0 chr4 123550652 123550706 -32079414 - ORR1C1 LTR MaLR 0 378 325 1 1527 1175 120 39 95 chr4 123550706 123550937 -32079183 - ORR1C1 LTR MaLR -160 218 1 1 1527 679 167 0 9 chr4 123550937 123551042 -32079078 - B1_Mur2 SINE Alu -20 129 26 1 1527 24 32 0 0 chr4 123551246 123551277 -32078843 + AT_rich Low_complexity Low_complexity 1 31 0 1 1527 753 274 11 11 chr4 123551806 123551987 -32078133 + B3A SINE B2 2 182 -16 1 1527 220 204 0 0 chr4 123553136 123553190 -32076930 + T-rich Low_complexity Low_complexity 1 54 0 1 1527 1253 34 0 7 chr4 123553190 123553337 -32076783 - B1_Mm SINE Alu 0 147 2 1 1527 321 362 31 16 chr4 123553962 123554091 -32076029 - RSINE1 SINE B4 -23 142 12 1 1527 48 32 0 0 chr4 123557329 123557391 -32072729 + AT_rich Low_complexity Low_complexity 1 62 0 1 1527 291 54 0 0 chr4 123557404 123557441 -32072679 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1527 426 209 11 0 chr4 123557451 123557542 -32072578 - B3 SINE B2 -108 108 17 1 1527 371 289 45 13 chr4 123557911 123558065 -32072055 - ID_B1 SINE B4 -2 222 64 1 1527 508 223 26 43 chr4 123558173 123558290 -32071830 - B1_Mur4 SINE Alu -35 115 1 1 1527 540 111 0 0 chr4 123558390 123558471 -32071649 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 1 1527 862 220 98 16 chr4 123559115 123559309 -32070811 + B3 SINE B2 1 210 -6 1 1527 1117 95 0 0 chr4 123559895 123560042 -32070078 - B1_Mus1 SINE Alu -1 147 1 1 1527 879 233 33 52 chr4 123560322 123560535 -32069585 - B3 SINE B2 -5 211 3 1 1527 183 100 0 0 chr4 123560550 123560580 -32069540 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1527 293 196 0 0 chr4 123560627 123560678 -32069442 - RSINE1 SINE B4 -51 114 64 1 1527 591 200 11 17 chr4 123561002 123561151 -32068969 - RLTR20B3 LTR ERVK -59 518 368 1 1527 3261 48 8 0 chr4 123561151 123561544 -32068576 - MTA_Mm LTR MaLR 0 396 1 1 1527 6065 81 10 78 chr4 123561544 123562582 -32067538 - MTA_Mm-int LTR MaLR 0 1098 132 1 1527 8866 21 0 0 chr4 123562599 123563712 -32066408 - L1Md_A LINE L1 0 6582 5470 1 1527 1031 97 18 0 chr4 123563712 123563877 -32066243 - MTA_Mm-int LTR MaLR -930 168 1 1 1527 3998 49 8 0 chr4 123563879 123564350 -32065770 - MT2C_Mm LTR ERVL 0 475 1 1 1527 769 249 57 89 chr4 123564354 123564725 -32065395 - RLTR20B3 LTR ERVK -198 379 21 1 1527 911 140 14 7 chr4 123564784 123564928 -32065192 - B1_Mur4 SINE Alu -5 145 1 1 1527 5168 42 0 46 chr4 123565003 123565659 -32064461 + L1_Mus2 LINE L1 5941 6566 0 1 1527 413 218 37 12 chr4 123565746 123565862 -32064258 + PB1D7 SINE Alu 4 119 -1 1 1527 2816 25 0 3 chr4 123565993 123566316 -32063804 + RLTRETN_Mm LTR ERVK 1 322 0 1 1527 581 159 80 0 chr4 123566622 123566735 -32063385 + B1_Mur4 SINE Alu 9 130 -20 1 1527 567 252 114 19 chr4 123566917 123567075 -32063045 - B3 SINE B2 -14 202 30 1 1527 654 188 156 0 chr4 123567105 123567233 -32062887 - B1_Mur2 SINE Alu 0 149 2 1 1527 233 128 0 0 chr4 123567233 123567272 -32062848 - B3 SINE B2 -176 40 2 1 1527 700 128 9 0 chr4 123567618 123567727 -32062393 - B1_Mur3 SINE Alu 0 149 40 1 1527 270 158 34 34 chr4 123567761 123567820 -32062300 - PB1D9 SINE Alu -61 59 1 1 1527 4409 117 70 45 chr4 123568306 123569274 -32060846 + RMER17B LTR ERVK 1 958 0 1 1527 21 0 0 0 chr4 123570048 123570069 -32060051 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 732 220 185 6 chr4 123574412 123574590 -32055530 - B3 SINE B2 -5 211 2 1 1527 258 193 0 34 chr4 123575076 123575135 -32054985 + B4A SINE B4 5 61 -231 1 1527 652 194 43 7 chr4 123575167 123575307 -32054813 + B1_Mur3 SINE Alu 1 145 -4 1 1527 24 0 0 0 chr4 123575350 123575374 -32054746 + AT_rich Low_complexity Low_complexity 1 24 0 1 1527 243 0 0 0 chr4 123575555 123575582 -32054538 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1527 485 174 174 0 chr4 123575582 123575697 -32054423 - B1_Mur2 SINE Alu -10 139 5 1 1527 635 94 10 0 chr4 123575710 123575806 -32054314 + (TCC)n Simple_repeat Simple_repeat 2 98 0 1 1527 877 255 149 4 chr4 123576568 123576836 -32053284 + ORR1D2 LTR MaLR 58 364 -6 1 1527 3824 134 52 4 chr4 123577029 123577720 -32052400 + RMER12 LTR ERVK 1 724 -598 1 1527 602 106 54 63 chr4 123577720 123577831 -32052289 + PB1D9 SINE Alu 1 110 -10 1 1527 1319 56 82 22 chr4 123578522 123578705 -32051415 - B2_Mm2 SINE B2 0 195 2 1 1527 1282 53 0 0 chr4 123579512 123579682 -32050438 + B2_Mm1t SINE B2 1 170 -23 1 1527 482 257 26 9 chr4 123580229 123580343 -32049777 - PB1D9 SINE Alu -2 118 3 1 1527 212 309 107 18 chr4 123580381 123580493 -32049627 - RSINE1 SINE B4 0 165 44 1 1527 225 0 0 0 chr4 123580533 123580558 -32049562 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1527 442 286 83 0 chr4 123581088 123581221 -32048899 + RSINE1 SINE B4 2 145 -20 1 1527 395 225 198 8 chr4 123581321 123581442 -32048678 - B1_Mus2 SINE Alu -1 146 3 1 1527 23 0 0 0 chr4 123582401 123582424 -32047696 + GC_rich Low_complexity Low_complexity 1 23 0 1 1527 269 256 55 11 chr4 123584398 123584489 -32045631 + B4A SINE B4 3 97 -195 1 1527 213 290 0 16 chr4 123584611 123584674 -32045446 + B1_Mus1 SINE Alu 35 96 -52 1 1527 189 0 0 0 chr4 123584686 123584707 -32045413 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1527 315 210 0 16 chr4 123584866 123584929 -32045191 + RSINE1 SINE B4 3 64 -101 1 1527 817 9 9 0 chr4 123584943 123585049 -32045071 - B1_Mm SINE Alu 0 147 41 1 1527 357 229 61 20 chr4 123585042 123585140 -32044980 + RSINE1 SINE B4 37 138 -27 1 1527 586 191 48 62 chr4 123585358 123585503 -32044617 + B1_Mur4 SINE Alu 1 143 -7 1 1527 439 175 0 36 chr4 123585866 123585949 -32044171 + B1F SINE Alu 40 119 -30 1 1527 319 281 108 8 chr4 123586237 123586366 -32043754 - ID_B1 SINE B4 -3 221 80 1 1527 239 380 41 0 chr4 123586692 123586813 -32043307 + L2b LINE L2 3242 3367 -8 1 1527 21 57 0 0 chr4 123587210 123587245 -32042875 + AT_rich Low_complexity Low_complexity 1 35 0 1 1527 347 181 34 57 chr4 123587283 123587371 -32042749 + ID SINE ID 3 88 -136 1 1527 367 188 36 12 chr4 123587921 123588013 -32042107 - B1_Mur2 SINE Alu -44 105 12 1 1527 623 209 72 0 chr4 123589348 123589501 -32040619 + MIRc SINE MIR 78 241 -27 1 1527 396 245 151 0 chr4 123590242 123590348 -32039772 - B1F1 SINE Alu -27 122 1 1 1527 743 193 48 27 chr4 123590494 123590680 -32039440 + B2_Mm2 SINE B2 1 190 -5 1 1527 323 291 26 0 chr4 123590891 123591008 -32039112 + RSINE1 SINE B4 2 121 -44 1 1527 487 266 72 8 chr4 123591055 123591180 -32038940 + ID_B1 SINE B4 83 215 -9 1 1527 273 257 0 26 chr4 123591229 123591305 -32038815 + MIRc SINE MIR 164 237 -31 1 1527 546 16 0 0 chr4 123591508 123591571 -32038549 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 1527 1627 11 0 0 chr4 123591573 123591750 -32038370 - B2_Mm1a SINE B2 -15 178 2 1 1527 630 291 24 0 chr4 123592353 123592518 -32037602 - ID_B1 SINE B4 -55 169 1 1 1527 797 187 104 0 chr4 123592544 123592726 -32037394 - B3 SINE B2 0 216 16 1 1527 292 334 70 18 chr4 123592757 123592892 -32037228 + B4 SINE B4 6 140 -84 1 1527 435 234 85 42 chr4 123593313 123593478 -32036642 + MER2 DNA MER2_type 169 340 -5 1 1527 258 293 13 26 chr4 123593604 123593681 -32036439 + ID4_ SINE ID 7 82 -1 1 1527 201 189 0 36 chr4 123594673 123594728 -32035392 + (CGG)n Simple_repeat Simple_repeat 3 55 0 1 1527 257 260 10 10 chr4 123594853 123594950 -32035170 + (CGG)n Simple_repeat Simple_repeat 1 97 0 1 1527 22 0 0 0 chr4 123595497 123595519 -32034601 + GC_rich Low_complexity Low_complexity 1 22 0 1 1527 368 257 182 28 chr4 123596131 123596307 -32033813 - ID_B1 SINE B4 -21 203 1 1 1527 306 238 87 19 chr4 123596658 123596761 -32033359 + PB1D9 SINE Alu 3 112 -8 1 1527 254 257 108 32 chr4 123597791 123597937 -32032183 - MIR SINE MIR -58 210 43 1 1527 234 0 0 0 chr4 123598721 123598747 -32031373 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1527 416 265 24 49 chr4 123599331 123599454 -32030666 + PB1D9 SINE Alu 1 120 0 1 1527 269 246 31 0 chr4 123599693 123599758 -32030362 - ID4_ SINE ID -13 70 4 1 1527 551 183 107 8 chr4 123600544 123600665 -32029455 - B1_Mur2 SINE Alu -15 134 2 1 1527 492 241 0 33 chr4 123600736 123600856 -32029264 + ID_B1 SINE B4 84 199 -25 1 1528 319 292 0 62 chr4 123601619 123601732 -32028388 + PB1D10 SINE Alu 2 107 -10 1 1528 575 218 92 0 chr4 123602273 123602415 -32027705 - RSINE1 SINE B4 -7 158 4 1 1528 513 140 75 0 chr4 123602616 123602709 -32027411 + B1_Mur1 SINE Alu 41 140 -9 1 1528 537 192 75 0 chr4 123602899 123603019 -32027101 - B1_Mur1 SINE Alu -18 131 3 1 1528 192 40 0 0 chr4 123603030 123603055 -32027065 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 1528 470 211 372 0 chr4 123603081 123603237 -32026883 - B3 SINE B2 -1 215 2 1 1528 333 221 100 44 chr4 123603306 123603396 -32026724 + PB1D9 SINE Alu 26 120 0 1 1528 198 71 0 0 chr4 123604148 123604176 -32025944 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1528 635 218 89 13 chr4 123604671 123604829 -32025291 - ID_B1 SINE B4 0 224 55 1 1528 378 0 0 0 chr4 123605096 123605138 -32024982 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1528 366 305 33 33 chr4 123605147 123605269 -32024851 - RSINE1 SINE B4 -1 164 43 1 1528 563 248 46 55 chr4 123606083 123606301 -32023819 - B3 SINE B2 0 216 1 1 1528 424 274 70 17 chr4 123606364 123606479 -32023641 - RSINE1 SINE B4 -20 145 25 2 1528 477 243 19 0 chr4 123607351 123607454 -32022666 - B3 SINE B2 -33 183 79 2 1528 684 170 96 0 chr4 123607477 123607612 -32022508 + B1_Mus1 SINE Alu 1 148 0 2 1528 678 237 69 44 chr4 123607630 123607833 -32022287 - B3 SINE B2 -6 210 3 2 1528 282 193 0 0 chr4 123607856 123607913 -32022207 + CT-rich Low_complexity Low_complexity 2 58 0 2 1528 1085 200 10 5 chr4 123607924 123608130 -32021990 - B3 SINE B2 -7 209 3 2 1528 684 218 45 8 chr4 123608169 123608303 -32021817 - B1_Mur2 SINE Alu -10 139 1 2 1528 180 65 20 61 chr4 123608428 123608477 -32021643 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 2 1528 1156 68 7 0 chr4 123608477 123608623 -32021497 - B1_Mus2 SINE Alu 0 147 1 2 1528 217 314 0 44 chr4 123608976 123609066 -32021054 - B4 SINE B4 -205 87 2 2 1528 532 255 112 0 chr4 123609860 123610021 -32020099 + B3A SINE B2 5 183 -15 2 1528 571 140 11 0 chr4 123610080 123610173 -32019947 - MTC LTR MaLR -131 290 197 2 1528 253 345 0 12 chr4 123610445 123610530 -32019590 + PB1D9 SINE Alu 1 84 -36 2 1528 1827 190 56 15 chr4 123610535 123610930 -32019190 - MTD LTR MaLR -8 411 1 2 1528 1049 224 18 9 chr4 123610973 123611194 -32018926 + ID_B1 SINE B4 2 224 0 2 1528 271 279 156 0 chr4 123611334 123611456 -32018664 - L1M5 LINE L1 -701 5539 5399 2 1528 1852 102 0 58 chr4 123612060 123612353 -32017767 - L1Md_T LINE L1 -2 6580 6305 2 1528 244 350 25 16 chr4 123612370 123612492 -32017628 - Charlie15a DNA MER1_type -13 211 89 2 1528 695 274 0 0 chr4 123614538 123614673 -32015447 + RSINE1 SINE B4 8 142 -23 2 1528 216 349 32 0 chr4 123615292 123615355 -32014765 + PB1 SINE Alu 7 71 -56 2 1528 249 202 73 138 chr4 123615453 123615562 -32014558 + PB1 SINE Alu 48 149 0 2 1528 809 167 28 0 chr4 123615657 123615790 -32014330 + B1_Mur4 SINE Alu 1 137 -13 2 1528 221 0 35 0 chr4 123615790 123615819 -32014301 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2 1528 326 224 14 29 chr4 123616289 123616358 -32013762 - B1_Mur3 SINE Alu -51 98 31 2 1528 318 280 228 6 chr4 123616431 123616620 -32013500 - MIR SINE MIR -37 225 6 2 1528 336 24 0 0 chr4 123617455 123617496 -32012624 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1528 1191 64 0 0 chr4 123617497 123617637 -32012483 - B1_Mus1 SINE Alu -6 142 3 2 1528 429 20 0 0 chr4 123618166 123618216 -32011904 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1528 1301 73 34 0 chr4 123618382 123618559 -32011561 + B2_Mm1t SINE B2 1 183 -10 2 1528 564 15 0 0 chr4 123618559 123618624 -32011496 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 2 1528 833 220 19 61 chr4 123618761 123618974 -32011146 - B3 SINE B2 -6 210 7 2 1528 853 303 0 19 chr4 123619963 123620175 -32009945 + ID_B1 SINE B4 7 214 -10 2 1528 277 280 8 93 chr4 123620083 123620201 -32009919 + RLTR25A LTR ERVK 522 629 -474 2 1528 261 109 0 0 chr4 123620359 123620405 -32009715 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1528 211 286 86 0 chr4 123620412 123620482 -32009638 - ID_B1 SINE B4 -81 143 68 2 1528 252 0 0 0 chr4 123620627 123620655 -32009465 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1528 1320 14 0 0 chr4 123620660 123620807 -32009313 - B1_Mm SINE Alu 0 147 1 2 1528 236 359 37 46 chr4 123621298 123621406 -32008714 + PB1D10 SINE Alu 1 107 -10 2 1528 21 0 0 0 chr4 123621794 123621815 -32008305 + GC_rich Low_complexity Low_complexity 1 21 0 2 1528 820 272 11 91 chr4 123622209 123622280 -32007840 - B4A SINE B4 -50 242 169 2 1528 1134 176 13 39 chr4 123622280 123622511 -32007609 - URR1B DNA MER1_type 0 225 1 2 1528 820 272 11 91 chr4 123622511 123622702 -32007418 - B4A SINE B4 -124 168 2 2 1528 381 272 43 11 chr4 123622702 123622792 -32007328 - PB1D10 SINE Alu -24 93 1 2 1528 230 275 55 0 chr4 123622886 123622977 -32007143 - Lx8 LINE L1 -13 7460 7365 2 1528 387 0 0 0 chr4 123622998 123623041 -32007079 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1528 484 317 132 7 chr4 123623041 123623314 -32006806 - Lx8 LINE L1 -211 7262 6956 2 1528 200 268 169 0 chr4 123623602 123623673 -32006447 - L2a LINE L2 0 3426 3344 2 1528 791 127 7 0 chr4 123624933 123625083 -32005037 + (TC)n Simple_repeat Simple_repeat 2 152 0 2 1528 350 127 14 0 chr4 123625674 123625745 -32004375 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1528 490 279 79 84 chr4 123625747 123625962 -32004158 - ID_B1 SINE B4 -6 218 5 2 1528 830 239 28 28 chr4 123628091 123628306 -32001814 - ID_B1 SINE B4 -8 216 2 2 1528 300 53 0 0 chr4 123628698 123628736 -32001384 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2 1528 333 0 0 0 chr4 123629653 123629690 -32000430 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1528 26 0 0 0 chr4 123631300 123631326 -31998794 + AT_rich Low_complexity Low_complexity 1 26 0 2 1528 366 238 0 0 chr4 123631332 123631395 -31998725 + PB1D9 SINE Alu 3 65 -55 2 1528 475 252 158 0 chr4 123631430 123631569 -31998551 + ID_B1 SINE B4 61 221 -3 2 1528 709 179 51 22 chr4 123631652 123631789 -31998331 + B1_Mur2 SINE Alu 5 145 -4 2 1528 405 228 172 16 chr4 123631945 123632137 -31997983 - L1ME3B LINE L1 -222 6018 5797 2 1528 288 329 97 74 chr4 123632200 123632469 -31997651 - B4 SINE B4 -16 276 2 2 1528 2793 48 11 6 chr4 123632540 123632894 -31997226 - L1Md_F3 LINE L1 0 6584 6229 2 1528 297 241 52 94 chr4 123633423 123633519 -31996601 + PB1D10 SINE Alu 14 105 -12 2 1528 24 0 0 0 chr4 123635624 123635648 -31994472 + AT_rich Low_complexity Low_complexity 1 24 0 2 1528 362 278 52 0 chr4 123636806 123636903 -31993217 - PB1D10 SINE Alu -3 114 13 2 1528 1369 73 17 0 chr4 123637186 123637363 -31992757 - B2_Mm2 SINE B2 -14 181 2 2 1528 449 217 249 33 chr4 123637495 123637661 -31992459 + B3 SINE B2 37 216 0 2 1528 449 343 72 19 chr4 123637672 123637880 -31992240 - MIRb SINE MIR -14 254 36 2 1528 348 138 0 0 chr4 123638030 123638095 -31992025 + (CAA)n Simple_repeat Simple_repeat 2 66 0 2 1528 526 248 178 0 chr4 123639232 123639389 -31990731 + B3A SINE B2 4 188 -10 2 1528 531 286 29 22 chr4 123639464 123639600 -31990520 - B1F SINE Alu -12 137 1 2 1528 211 312 0 30 chr4 123639541 123639607 -31990513 - B4A SINE B4 -148 144 81 2 1528 216 97 0 0 chr4 123639856 123639887 -31990233 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1528 489 268 0 18 chr4 123640521 123640635 -31989485 - PB1D10 SINE Alu -1 116 5 2 1528 185 65 0 31 chr4 123640640 123640672 -31989448 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 2 1528 869 176 14 14 chr4 123640729 123640873 -31989247 - B1_Mur3 SINE Alu -1 148 5 2 1528 385 240 34 116 chr4 123640763 123640909 -31989211 - MT2B LTR ERVL -337 264 131 2 1528 219 292 0 0 chr4 123641013 123641061 -31989059 + polypyrimidine Low_complexity Low_complexity 3 50 0 2 1528 534 200 139 0 chr4 123641065 123641180 -31988940 - B1_Mur2 SINE Alu -5 144 14 2 1528 481 202 58 0 chr4 123641187 123641291 -31988829 - ID_B1 SINE B4 -1 223 114 2 1528 233 173 0 37 chr4 123641291 123641345 -31988775 + L1M3 LINE L1 5869 5920 -269 2 1528 318 296 251 9 chr4 123641345 123641465 -31988655 - RMER15 LTR ERVL -3 572 441 2 1528 2389 162 64 73 chr4 123641465 123641872 -31988248 - RLTR11A LTR ERVK 0 528 155 2 1528 1214 48 0 7 chr4 123641872 123642020 -31988100 - B1_Mus2 SINE Alu 0 147 1 2 1528 2389 162 64 73 chr4 123642020 123642144 -31987976 - RLTR11A LTR ERVK -374 154 2 2 1528 318 296 251 9 chr4 123642144 123642238 -31987882 - RMER15 LTR ERVL -135 440 307 2 1528 411 307 0 0 chr4 123642405 123642519 -31987601 + PB1 SINE Alu 12 125 -2 2 1528 211 169 0 63 chr4 123642555 123642618 -31987502 + G-rich Low_complexity Low_complexity 3 61 0 2 1528 271 230 11 187 chr4 123642637 123642728 -31987392 + ID SINE ID 8 82 -142 2 1528 721 168 0 25 chr4 123643074 123643196 -31986924 + PB1D9 SINE Alu 1 119 -1 2 1528 339 326 99 36 chr4 123643449 123643672 -31986448 + MamGypLTR1a LTR Gypsy 1 237 -547 2 1528 669 241 106 11 chr4 123644165 123644261 -31985859 - ID_B1 SINE B4 -16 208 102 2 1528 270 0 0 0 chr4 123644261 123644291 -31985829 + (CACTG)n Simple_repeat Simple_repeat 1 30 0 2 1528 669 241 106 11 chr4 123644291 123644383 -31985737 - ID_B1 SINE B4 -123 101 3 2 1528 273 320 0 0 chr4 123644473 123644551 -31985569 - ID4_ SINE ID -3 80 3 2 1528 231 270 122 0 chr4 123644564 123644638 -31985482 - PB1D10 SINE Alu -1 116 34 2 1528 352 155 59 0 chr4 123644704 123644785 -31985335 - RSINE1 SINE B4 -29 136 79 2 1528 362 294 110 0 chr4 123644818 123644927 -31985193 - B4A SINE B4 -170 122 2 2 1528 918 299 52 47 chr4 123644931 123645355 -31984765 - L1MB7 LINE L1 -2 6182 5757 2 1528 695 239 24 86 chr4 123645422 123645632 -31984488 - B3A SINE B2 0 198 2 2 1528 579 271 166 24 chr4 123645642 123645944 -31984176 - L1MB7 LINE L1 -489 5685 5336 2 1528 302 286 107 64 chr4 123646110 123646297 -31983823 + Charlie12 DNA MER1_type 21 215 -2658 2 1528 393 250 72 50 chr4 123646144 123646283 -31983837 - RMER30 DNA MER1_type -58 144 3 2 1528 250 326 28 7 chr4 123646298 123646440 -31983680 - L1MA6 LINE L1 -157 6143 5999 2 1528 681 13 0 0 chr4 123646511 123646589 -31983531 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 1528 943 117 116 7 chr4 123646593 123646748 -31983372 - B2_Mm2 SINE B2 -23 172 1 2 1528 978 309 53 36 chr4 123646774 123647267 -31982853 - L1MA6 LINE L1 -473 5827 5327 2 1528 1001 169 0 0 chr4 123647285 123647433 -31982687 - B1_Mur4 SINE Alu -2 148 1 2 1528 347 270 146 47 chr4 123647449 123647476 -31982644 - L1MA6 LINE L1 -854 5289 5264 2 1528 857 249 42 5 chr4 123647476 123647690 -31982430 - ID_B1 SINE B4 -1 223 2 2 1528 347 270 146 47 chr4 123647690 123647833 -31982287 - L1MA6 LINE L1 -880 5263 5102 2 1528 253 203 50 29 chr4 123647838 123647973 -31982147 - L1M4 LINE L1 -829 5335 5207 3 1528 1918 165 77 11 chr4 123647973 123648323 -31981797 + ORR1D1 LTR MaLR 1 373 -1 3 1528 253 249 45 62 chr4 123648323 123648374 -31981746 - L1M4 LINE L1 -940 5206 5149 3 1528 775 257 11 11 chr4 123648439 123648624 -31981496 - B3A SINE B2 -12 186 2 3 1528 351 373 68 26 chr4 123650373 123650563 -31979557 - MIRb SINE MIR -8 260 63 3 1528 21 0 0 0 chr4 123651094 123651115 -31979005 + AT_rich Low_complexity Low_complexity 1 21 0 3 1528 214 301 0 14 chr4 123651347 123651421 -31978699 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1528 330 192 40 14 chr4 123651681 123651755 -31978365 + ID4_ SINE ID 2 77 -6 3 1528 616 144 6 23 chr4 123651973 123652150 -31977970 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 3 1528 503 215 18 148 chr4 123652154 123652323 -31977797 - B1F2 SINE Alu -1 148 2 3 1528 219 286 0 0 chr4 123652428 123652477 -31977643 + ID4 SINE ID 15 63 -20 3 1528 256 181 0 40 chr4 123652764 123652839 -31977281 + G-rich Low_complexity Low_complexity 5 76 0 3 1528 1633 222 76 108 chr4 123652873 123653175 -31976945 - RLTR18B LTR ERVK 0 512 237 3 1528 1285 20 0 0 chr4 123653175 123653321 -31976799 + B1_Mus2 SINE Alu 2 147 0 3 1528 1633 222 76 108 chr4 123653321 123653518 -31976602 - RLTR18B LTR ERVK -276 236 29 3 1528 1027 230 14 0 chr4 123653606 123653819 -31976301 - B3 SINE B2 0 216 1 3 1528 435 305 8 8 chr4 123653819 123653938 -31976182 - RSINE1 SINE B4 -45 120 2 3 1528 348 313 60 13 chr4 123653971 123654120 -31976000 - L1M5 LINE L1 -1709 4437 4282 3 1528 615 276 102 15 chr4 123654154 123654224 -31975896 + ID SINE ID 1 86 -138 3 1528 1224 164 9 26 chr4 123654224 123654450 -31975670 - URR1A DNA MER1_type 0 226 5 3 1528 615 276 102 15 chr4 123654450 123654585 -31975535 + ID_B1 SINE B4 87 224 0 3 1528 560 227 21 74 chr4 123654607 123654797 -31975323 - B3A SINE B2 -4 194 15 3 1528 901 249 8 15 chr4 123655262 123655523 -31974597 - L1ME2z LINE L1 -10 6434 6176 3 1528 246 137 0 76 chr4 123655559 123655638 -31974482 + (TATG)n Simple_repeat Simple_repeat 4 76 0 3 1528 578 253 43 25 chr4 123655657 123655819 -31974301 - RSINE1 SINE B4 0 165 1 3 1528 362 313 23 18 chr4 123655841 123656059 -31974061 - L1ME2z LINE L1 -301 6143 5925 3 1528 593 292 33 38 chr4 123656068 123656278 -31973842 + MLT1A LTR MaLR 166 374 0 3 1528 22 35 0 0 chr4 123656321 123656350 -31973770 + AT_rich Low_complexity Low_complexity 1 29 0 3 1528 225 196 0 0 chr4 123656351 123656397 -31973723 - Lx8 LINE L1 -8 7465 7420 3 1528 281 299 9 27 chr4 123656489 123656599 -31973521 - Lx8 LINE L1 -358 7115 7008 3 1528 733 247 213 0 chr4 123656912 123657151 -31972969 - B4A SINE B4 -2 290 1 3 1528 212 125 0 40 chr4 123657154 123657204 -31972916 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1528 24 0 0 0 chr4 123657341 123657365 -31972755 + AT_rich Low_complexity Low_complexity 1 24 0 3 1528 283 243 83 55 chr4 123657411 123657433 -31972687 - B4 SINE B4 -180 112 1 3 1528 495 195 0 0 chr4 123657433 123657520 -31972600 - B3A SINE B2 -111 87 1 3 1528 279 0 0 0 chr4 123657600 123657631 -31972489 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1528 956 117 22 0 chr4 123657631 123657768 -31972352 - B1_Mur4 SINE Alu -9 141 2 3 1528 686 206 8 15 chr4 123658197 123658330 -31971790 - B3A SINE B2 -65 133 2 3 1528 667 152 178 0 chr4 123658340 123658458 -31971662 - B1_Mur1 SINE Alu -1 148 10 3 1528 414 236 144 38 chr4 123658458 123658472 -31971648 - ID_B1 SINE B4 -1 223 78 3 1528 1057 205 121 20 chr4 123658543 123658792 -31971328 + B4A SINE B4 1 274 -18 3 1528 367 236 54 0 chr4 123659012 123659116 -31971004 + MIRb SINE MIR 55 174 -94 3 1528 197 226 62 31 chr4 123660159 123660223 -31969897 + MIRm SINE MIR 132 197 -79 3 1528 465 103 0 0 chr4 123660546 123660614 -31969506 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 3 1528 198 0 0 0 chr4 123660614 123660635 -31969485 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 1528 953 257 103 116 chr4 123661823 123662202 -31967918 - MTEa LTR MaLR -5 374 1 3 1528 872 214 19 86 chr4 123662255 123662465 -31967655 + B3A SINE B2 3 198 0 3 1528 987 147 0 0 chr4 123662545 123662722 -31967398 + (TCCC)n Simple_repeat Simple_repeat 4 180 0 3 1528 672 13 0 0 chr4 123662722 123662798 -31967322 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 3 1528 330 303 30 0 chr4 123662799 123662898 -31967222 - PB1D10 SINE Alu -13 104 3 3 1528 573 279 92 6 chr4 123663890 123664063 -31966057 - MER3 DNA MER1_type -8 201 14 3 1528 305 196 0 0 chr4 123664382 123664433 -31965687 - HAL1-3A_ME LINE L1 -835 2023 1973 3 1528 621 172 0 32 chr4 123664438 123664624 -31965496 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1528 556 151 0 63 chr4 123664666 123664857 -31965263 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1528 782 207 192 69 chr4 123664863 123665123 -31964997 - B4 SINE B4 0 292 1 3 1528 1006 312 79 61 chr4 123665128 123665650 -31964470 + MER74B LTR ERVL 70 601 -21 3 1528 655 280 37 9 chr4 123665650 123665866 -31964254 + ID_B1 SINE B4 2 223 -1 3 1528 1006 312 79 61 chr4 123665866 123665886 -31964234 + MER74B LTR ERVL 602 622 0 3 1528 202 348 70 27 chr4 123665970 123666156 -31963964 - L2c LINE L2 -227 3160 2967 3 1528 404 340 42 61 chr4 123666398 123666661 -31963459 + MLT1H1 LTR MaLR 12 269 -286 3 1528 837 221 57 21 chr4 123667112 123667306 -31962814 - ID_B1 SINE B4 0 224 24 3 1528 282 56 0 0 chr4 123669541 123669577 -31960543 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1528 281 297 66 0 chr4 123670466 123670557 -31959563 + MER45A DNA Tip100 49 145 -33 3 1528 207 0 0 0 chr4 123670884 123670907 -31959213 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 1528 628 252 37 19 chr4 123670934 123671095 -31959025 + ID_B1 SINE B4 86 249 -43 3 1528 261 0 0 0 chr4 123671097 123671126 -31958994 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1528 510 291 71 16 chr4 123671197 123671379 -31958741 - L2a LINE L2 -18 3408 3217 3 1528 1229 183 0 0 chr4 123672011 123672208 -31957912 + B3 SINE B2 1 197 -19 3 1528 333 0 0 0 chr4 123672453 123672490 -31957630 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1528 281 297 0 0 chr4 123672500 123672601 -31957519 - L1M5 LINE L1 -593 5571 5471 3 1528 653 245 155 0 chr4 123672611 123672766 -31957354 - B3 SINE B2 -37 179 1 3 1528 522 43 0 0 chr4 123673481 123673550 -31956570 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1528 463 216 9 97 chr4 123673568 123673681 -31956439 - B3A SINE B2 -26 172 70 3 1528 255 295 18 9 chr4 123674388 123674513 -31955607 - MIR SINE MIR -93 175 51 3 1528 396 326 22 7 chr4 123675131 123675270 -31954850 + MLT1L LTR MaLR 308 448 -162 3 1528 454 259 28 35 chr4 123675535 123675679 -31954441 + ID_B1 SINE B4 81 223 -1 3 1528 188 170 0 41 chr4 123676535 123676584 -31953536 + T-rich Low_complexity Low_complexity 4 50 0 3 1528 417 312 118 33 chr4 123677779 123678084 -31952036 + L1M4 LINE L1 5273 5603 -571 3 1528 749 227 76 55 chr4 123678376 123678819 -31951301 + RMER17C LTR ERVK 1 375 -35 3 1528 384 228 0 12 chr4 123679220 123679300 -31950820 - ID4_ SINE ID -3 80 2 3 1528 392 290 143 81 chr4 123679303 123679562 -31950558 + MLT1D LTR MaLR 64 338 -167 3 1528 249 262 16 0 chr4 123680469 123680530 -31949590 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 3 1528 2267 142 28 6 chr4 123680843 123681204 -31948916 - ORR1C1 LTR MaLR 0 378 10 3 1528 200 297 16 0 chr4 123681217 123681281 -31948839 + (TATG)n Simple_repeat Simple_repeat 3 67 0 3 1528 297 298 58 141 chr4 123681300 123681577 -31948543 + RMER12 LTR ERVK 734 987 -335 3 1528 450 53 0 0 chr4 123681906 123681963 -31948157 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1528 334 292 183 0 chr4 123682020 123682140 -31947980 + MLT2D LTR ERVL 57 198 -358 3 1528 413 321 25 6 chr4 123682152 123682308 -31947812 + MLT2D LTR ERVL 380 546 -13 3 1528 1147 241 67 75 chr4 123684158 123684517 -31945603 - MTD LTR MaLR 0 419 64 3 1528 762 268 6 6 chr4 123684556 123684721 -31945399 - ID_B1 SINE B4 -58 166 2 3 1528 399 171 0 0 chr4 123684769 123684845 -31945275 + CT-rich Low_complexity Low_complexity 4 79 0 3 1528 1274 41 0 0 chr4 123685707 123685853 -31944267 + B1_Mm SINE Alu 1 146 -1 3 1528 246 132 0 0 chr4 123685862 123685915 -31944205 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1528 420 304 120 0 chr4 123686107 123686232 -31943888 - MLT2F LTR ERVL -518 145 6 3 1528 506 220 6 17 chr4 123686656 123686836 -31943284 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1528 366 307 65 95 chr4 123687066 123687235 -31942885 - RSINE1 SINE B4 0 165 2 3 1528 620 235 9 9 chr4 123687272 123687388 -31942732 - B1_Mur1 SINE Alu -32 117 2 3 1528 21 36 0 0 chr4 123687844 123687872 -31942248 + AT_rich Low_complexity Low_complexity 1 28 0 3 1528 537 130 194 0 chr4 123687881 123687984 -31942136 + RLTR11B LTR ERVK 2 125 -328 3 1528 617 140 264 34 chr4 123687984 123688157 -31941963 + RLTR11A2 LTR ERVK 1 214 -313 3 1528 1851 112 46 71 chr4 123688157 123688483 -31941637 + ORR1A3 LTR MaLR 1 318 -8 3 1528 1782 145 25 22 chr4 123688487 123688804 -31941316 + RLTR11A2 LTR ERVK 210 527 0 3 1528 944 260 14 0 chr4 123688828 123689036 -31941084 - ID_B1 SINE B4 -12 212 2 3 1528 1091 284 22 11 chr4 123689060 123689331 -31940789 - B4A SINE B4 -12 280 7 3 1528 5259 139 52 22 chr4 123689395 123690265 -31939855 + RMER19B LTR ERVK 1 896 -6 3 1528 209 264 83 0 chr4 123690394 123690466 -31939654 + MIR SINE MIR 46 123 -139 3 1528 559 208 0 0 chr4 123690596 123690692 -31939428 - B1F1 SINE Alu -45 104 9 3 1528 235 272 48 24 chr4 123690749 123690832 -31939288 - L2a LINE L2 -3 3423 3339 3 1528 255 281 29 29 chr4 123691006 123691131 -31938989 + GA-rich Low_complexity Low_complexity 1 125 0 4 1528 510 125 0 0 chr4 123691136 123691216 -31938904 + (AGGGGG)n Simple_repeat Simple_repeat 1 80 0 4 1528 3101 121 39 29 chr4 123691411 123691930 -31938190 + RLTR28 LTR ERVL 1 524 0 4 1528 498 75 0 0 chr4 123692053 123692120 -31938000 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 4 1528 2518 210 8 160 chr4 123693508 123693885 -31936235 - RMER19C LTR ERVK 0 611 280 4 1528 2967 107 0 73 chr4 123693885 123694349 -31935771 + RLTR23 LTR ERV1 1 430 0 4 1528 2518 210 8 160 chr4 123694349 123694691 -31935429 - RMER19C LTR ERVK -332 279 1 4 1528 248 185 117 0 chr4 123694698 123694781 -31935339 + MLT1J1 LTR MaLR 323 417 -27 4 1528 2731 122 9 50 chr4 123695217 123695675 -31934445 - RLTR26 LTR ERVK -177 465 27 4 1528 461 246 51 39 chr4 123696246 123696422 -31933698 - MIRb SINE MIR -60 208 19 4 1528 266 287 71 50 chr4 123697504 123697603 -31932517 + RSINE1 SINE B4 15 115 -50 4 1528 339 25 0 0 chr4 123697604 123697644 -31932476 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1528 253 0 31 0 chr4 123697644 123697676 -31932444 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1528 617 137 23 11 chr4 123697680 123697857 -31932263 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 4 1528 189 74 0 0 chr4 123697865 123697892 -31932228 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1528 1020 280 25 29 chr4 123698175 123698454 -31931666 - B4A SINE B4 -6 286 9 4 1528 254 216 14 0 chr4 123698981 123699055 -31931065 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1528 643 264 6 30 chr4 123699056 123699224 -31930896 - RSINE1 SINE B4 0 165 2 4 1528 3479 87 33 12 chr4 123699832 123700323 -31929797 + Lx LINE L1 6152 6652 -2 4 1528 222 248 75 56 chr4 123700363 123700470 -31929650 + MIRc SINE MIR 91 199 -63 4 1528 491 282 81 13 chr4 123700709 123700907 -31929213 + B4 SINE B4 10 286 -6 4 1528 1039 298 85 18 chr4 123701362 123701409 -31928711 - MTEa LTR MaLR -14 365 314 4 1528 995 84 7 0 chr4 123701409 123701552 -31928568 + (GGAA)n Simple_repeat Simple_repeat 4 147 0 4 1528 1266 247 68 7 chr4 123701552 123701846 -31928274 - MTEa LTR MaLR -67 312 1 4 1528 2577 62 12 3 chr4 123701965 123702289 -31927831 - ORR1A2 LTR MaLR 0 327 1 4 1528 522 57 0 0 chr4 123703701 123703771 -31926349 + (GGA)n Simple_repeat Simple_repeat 2 71 0 4 1528 459 35 0 0 chr4 123704087 123704144 -31925976 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1528 684 293 87 34 chr4 123704147 123704412 -31925708 - B4 SINE B4 -13 279 1 4 1528 669 200 77 0 chr4 123704448 123704578 -31925542 + B1_Mur1 SINE Alu 1 140 -9 4 1528 673 134 9 35 chr4 123704596 123704712 -31925408 + B3A SINE B2 1 113 -85 4 1528 2444 138 76 10 chr4 123704795 123705190 -31924930 + MTC LTR MaLR 1 421 0 4 1528 283 237 26 26 chr4 123706017 123706095 -31924025 - L2b LINE L2 0 3375 3298 4 1528 200 100 25 0 chr4 123706920 123706960 -31923160 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 4 1528 330 45 0 0 chr4 123707339 123707383 -31922737 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1528 3241 46 5 10 chr4 123707499 123707897 -31922223 - MTA_Mm LTR MaLR 0 396 1 4 1528 255 296 36 57 chr4 123708540 123708594 -31921526 - LTR48B LTR ERV1 -144 500 449 4 1528 1679 191 108 23 chr4 123708594 123708937 -31921183 + ORR1D1 LTR MaLR 3 374 0 4 1528 255 296 36 57 chr4 123708937 123709022 -31921098 - LTR48B LTR ERV1 -196 448 364 4 1528 929 229 27 45 chr4 123710602 123710822 -31919298 + B3 SINE B2 1 216 0 4 1528 1028 261 214 24 chr4 123711036 123711452 -31918668 - RMER5 LTR ERV1 0 534 40 4 1528 234 62 0 0 chr4 123711554 123711586 -31918534 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1528 1447 243 66 28 chr4 123711586 123711979 -31918141 + MTD LTR MaLR 12 419 0 4 1528 249 108 0 0 chr4 123711979 123712016 -31918104 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 4 1528 275 113 19 0 chr4 123712020 123712073 -31918047 + (TTTG)n Simple_repeat Simple_repeat 1 54 0 4 1528 536 167 104 0 chr4 123712089 123712185 -31917935 - B1_Mur1 SINE Alu -9 140 35 4 1528 441 0 0 0 chr4 123712562 123712611 -31917509 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1528 375 23 0 0 chr4 123713862 123713906 -31916214 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1528 284 257 42 14 chr4 123714452 123714523 -31915597 - MIRb SINE MIR -73 195 123 4 1528 204 360 12 0 chr4 123714745 123714831 -31915289 + MIR3 SINE MIR 109 195 -13 4 1528 253 322 95 9 chr4 123715213 123715329 -31914791 + MIR SINE MIR 110 235 -27 4 1528 365 245 18 28 chr4 123715498 123715607 -31914513 + MIR SINE MIR 52 159 -103 4 1528 205 250 21 0 chr4 123715734 123715782 -31914338 - MIRc SINE MIR -48 220 172 4 1528 1227 63 0 0 chr4 123716325 123716499 -31913621 + (CA)n Simple_repeat Simple_repeat 2 175 0 4 1528 191 268 51 54 chr4 123717007 123717097 -31913023 - L2b LINE L2 -263 3112 3021 4 1528 1114 216 95 30 chr4 123717159 123717504 -31912616 + MTD LTR MaLR 43 397 -22 4 1528 753 195 0 0 chr4 123718016 123718144 -31911976 - B1_Mur4 SINE Alu -4 146 19 4 1528 499 273 6 94 chr4 123718023 123718193 -31911927 - ID_B1 SINE B4 -11 213 59 4 1528 545 198 8 0 chr4 123718214 123718340 -31911780 + (TCCA)n Simple_repeat Simple_repeat 3 129 0 4 1528 401 330 63 26 chr4 123718494 123718684 -31911436 + MIR SINE MIR 2 198 -64 4 1528 2097 129 100 3 chr4 123718684 123719045 -31911075 - ORR1B1 LTR MaLR 0 394 8 4 1528 2160 183 76 52 chr4 123719642 123720354 -31909766 + ORR1B2 LTR MaLR 37 1067 -442 4 1528 1587 214 88 40 chr4 123720363 123720763 -31909357 + ORR1B2 LTR MaLR 1 419 0 4 1528 3266 48 2 0 chr4 123720925 123721343 -31908777 - L1Md_F2 LINE L1 0 6582 6169 4 1528 392 0 21 0 chr4 123722468 123722516 -31907604 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1528 238 246 90 23 chr4 123722613 123722746 -31907374 + L1ME4a LINE L1 5978 6119 -5 4 1528 296 264 10 103 chr4 123723079 123723176 -31906944 - BC1_Mm scRNA scRNA -49 103 16 4 1528 836 109 0 86 chr4 123723381 123723521 -31906599 + B1_Mur2 SINE Alu 22 149 0 4 1528 202 169 0 48 chr4 123723623 123723685 -31906435 + G-rich Low_complexity Low_complexity 2 60 0 4 1528 351 0 0 0 chr4 123723815 123723854 -31906266 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1528 237 217 22 0 chr4 123724028 123724074 -31906046 + polypyrimidine Low_complexity Low_complexity 2 48 0 4 1528 310 365 75 14 chr4 123724074 123724221 -31905899 - HAL1-3A_ME LINE L1 -419 2439 2284 4 1528 258 303 15 0 chr4 123724221 123724287 -31905833 + polypyrimidine Low_complexity Low_complexity 3 69 0 4 1528 372 276 55 8 chr4 123724459 123724587 -31905533 - MIRb SINE MIR -118 150 17 4 1528 216 0 0 0 chr4 123724803 123724827 -31905293 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1528 184 329 14 0 chr4 123724873 123724943 -31905177 + L2a LINE L2 3346 3416 -10 4 1528 538 297 8 15 chr4 123724992 123725122 -31904998 - ID_B1 SINE B4 -11 213 85 4 1528 249 333 41 10 chr4 123725124 123725221 -31904899 + L2a LINE L2 3324 3423 -3 4 1528 282 95 0 0 chr4 123726496 123726538 -31903582 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1528 246 62 0 0 chr4 123726538 123726570 -31903550 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1528 274 250 0 29 chr4 123726571 123726630 -31903490 - B4A SINE B4 -6 286 230 4 1528 1773 208 43 66 chr4 123726630 123727057 -31903063 - MTD LTR MaLR 0 419 6 4 1528 1732 222 69 30 chr4 123727124 123727588 -31902532 - RLTR11A2 LTR ERVK 0 527 46 4 1528 513 308 19 89 chr4 123727572 123727713 -31902407 - B4A SINE B4 -92 200 69 4 1528 3081 87 101 51 chr4 123727713 123728207 -31901913 - MURVY-LTR LTR ERV1 0 519 1 4 1528 513 308 19 89 chr4 123728207 123728279 -31901841 - B4A SINE B4 -224 68 2 4 1528 1168 69 7 0 chr4 123729180 123729324 -31900796 + B1_Mm SINE Alu 2 146 -1 4 1528 203 138 0 0 chr4 123729325 123729354 -31900766 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 4 1528 463 48 48 12 chr4 123729409 123729493 -31900627 + (TAA)n Simple_repeat Simple_repeat 1 87 0 4 1528 647 322 82 29 chr4 123729739 123730155 -31899965 + LTR16B1 LTR ERVL 7 444 -36 4 1528 1742 122 101 39 chr4 123730242 123730550 -31899570 + ORR1A2 LTR MaLR 1 327 0 4 1528 2425 150 30 60 chr4 123730793 123731226 -31898894 + MTC LTR MaLR 1 420 -1 4 1528 375 141 0 0 chr4 123731350 123731414 -31898706 + (TCC)n Simple_repeat Simple_repeat 3 66 0 4 1528 1328 159 119 56 chr4 123731414 123731700 -31898420 + MTD LTR MaLR 18 321 -98 4 1529 454 207 12 22 chr4 123732176 123732289 -31897831 + MTD LTR MaLR 308 421 0 4 1529 415 281 154 10 chr4 123732649 123732753 -31897367 - L1MEf LINE L1 -2433 3886 3754 4 1529 483 18 0 0 chr4 123732753 123732809 -31897311 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1529 415 268 132 29 chr4 123732809 123733034 -31897086 - L1MEf LINE L1 -2566 3753 3479 4 1529 702 98 0 0 chr4 123733042 123733164 -31896956 + (GA)n Simple_repeat Simple_repeat 1 122 0 4 1529 318 115 0 0 chr4 123733304 123733356 -31896764 + (T)n Simple_repeat Simple_repeat 1 52 0 4 1529 1189 61 0 7 chr4 123733357 123733505 -31896615 - B1_Mm SINE Alu 0 147 1 4 1529 404 318 93 14 chr4 123733505 123733869 -31896251 - L1M4 LINE L1 -3109 3037 2645 4 1529 234 0 0 0 chr4 123733882 123733908 -31896212 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1529 272 252 53 18 chr4 123733938 123734051 -31896069 - L1MEf LINE L1 -3829 2490 2374 4 1529 259 267 32 75 chr4 123734109 123734202 -31895918 + RSINE1 SINE B4 69 157 -8 4 1529 540 0 0 0 chr4 123734214 123734274 -31895846 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1529 1079 112 0 0 chr4 123734429 123734572 -31895548 + B1_Mus1 SINE Alu 2 144 -4 4 1529 543 304 203 23 chr4 123735104 123735618 -31894502 - L1MEf LINE L1 -4372 2028 1444 4 1529 239 79 0 26 chr4 123735618 123735657 -31894463 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 4 1529 286 252 223 0 chr4 123735680 123735744 -31894376 - B1_Mus1 SINE Alu 0 148 72 4 1529 1477 78 5 0 chr4 123735744 123735935 -31894185 + B2_Mm1a SINE B2 2 193 0 4 1529 286 252 223 0 chr4 123735935 123735973 -31894147 - B1_Mus1 SINE Alu -77 71 25 4 1529 368 188 100 0 chr4 123736012 123736092 -31894028 - B1_Mur3 SINE Alu -61 88 1 5 1529 670 163 0 14 chr4 123736241 123736384 -31893736 + CT-rich Low_complexity Low_complexity 2 142 0 5 1529 262 278 20 100 chr4 123736384 123736484 -31893636 - RLTR25A LTR ERVK -490 613 522 5 1529 864 143 0 8 chr4 123736402 123736529 -31893591 - B1_Mus2 SINE Alu -21 126 1 5 1529 339 321 142 77 chr4 123736596 123737102 -31893018 - L1MEf LINE L1 -5298 1102 564 4 1529 238 206 29 29 chr4 123737210 123737280 -31892840 + CT-rich Low_complexity Low_complexity 3 72 0 5 1529 300 246 0 0 chr4 123737780 123737845 -31892275 - B1F1 SINE Alu 0 149 85 5 1529 355 244 37 0 chr4 123737836 123737918 -31892202 + RLTR18 LTR ERVK 532 616 0 5 1529 610 234 218 16 chr4 123737918 123737974 -31892146 - MLT1A0 LTR MaLR -79 286 229 5 1529 180 0 0 0 chr4 123737974 123737994 -31892126 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1529 610 234 218 16 chr4 123737994 123738174 -31891946 - MLT1A0 LTR MaLR -137 228 2 5 1529 262 237 20 51 chr4 123738286 123738384 -31891736 + CT-rich Low_complexity Low_complexity 2 96 0 5 1529 522 46 0 0 chr4 123738539 123738604 -31891516 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1529 360 226 0 0 chr4 123738858 123738982 -31891138 + GA-rich Low_complexity Low_complexity 2 125 0 5 1529 252 255 61 41 chr4 123738985 123739083 -31891037 + ID_B1 SINE B4 121 220 -4 5 1529 426 154 0 25 chr4 123739007 123739087 -31891033 + PB1D9 SINE Alu 42 119 -1 5 1529 232 299 0 94 chr4 123739462 123739547 -31890573 + MLT1H LTR MaLR 31 107 -442 5 1529 724 220 89 39 chr4 123739547 123739727 -31890393 + B3A SINE B2 1 189 -9 5 1529 530 300 92 27 chr4 123739752 123739937 -31890183 + MLT1H LTR MaLR 92 288 -261 5 1529 678 248 14 14 chr4 123740225 123740372 -31889748 + B1F1 SINE Alu 2 148 -1 5 1529 612 0 0 0 chr4 123741251 123741319 -31888801 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1529 1128 235 9 0 chr4 123741577 123741790 -31888330 + B3 SINE B2 2 216 0 5 1529 202 308 32 71 chr4 123741832 123741958 -31888162 - MIRb SINE MIR -118 150 30 5 1529 477 0 0 0 chr4 123742216 123742269 -31887851 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1529 1963 165 96 6 chr4 123742707 123743061 -31887059 - ORR1B1 LTR MaLR -8 386 1 5 1529 331 26 0 0 chr4 123743276 123743314 -31886806 - HAL1-3A_ME LINE L1 -842 2016 1979 5 1529 667 264 182 68 chr4 123743316 123743568 -31886552 - B4 SINE B4 0 292 12 5 1529 276 0 68 0 chr4 123743657 123743701 -31886419 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1529 1236 34 0 7 chr4 123743701 123743836 -31886284 - B1_Mm SINE Alu -11 136 2 5 1529 745 272 71 45 chr4 123744663 123744975 -31885145 + MTD LTR MaLR 8 408 -11 5 1529 426 258 105 126 chr4 123745065 123745256 -31884864 + MER117 DNA MER1_type 10 196 -1 5 1529 1441 325 24 31 chr4 123745289 123745839 -31884281 + Lx7 LINE L1 6116 6661 -1035 5 1529 1562 41 0 35 chr4 123745857 123746058 -31884062 - B2_Mm2 SINE B2 0 195 2 5 1529 213 301 128 40 chr4 123746147 123746296 -31883824 + MIRc SINE MIR 82 243 -25 5 1529 667 279 121 21 chr4 123747683 123748001 -31882119 + Lx7 LINE L1 7025 7378 -95 5 1529 2123 148 126 5 chr4 123748001 123748375 -31881745 + MTC LTR MaLR 1 419 -2 5 1529 359 284 152 84 chr4 123748375 123748442 -31881678 + Lx7 LINE L1 7379 7445 -28 5 1529 669 170 0 18 chr4 123748452 123748566 -31881554 + B1_Mur3 SINE Alu 34 145 -4 5 1529 2213 120 101 0 chr4 123748570 123748928 -31881192 - ORR1B1 LTR MaLR 0 394 1 5 1529 217 211 155 95 chr4 123749174 123749258 -31880862 + MIRb SINE MIR 113 201 -67 5 1529 1948 127 67 0 chr4 123749724 123750023 -31880097 - ORR1A2 LTR MaLR -8 319 1 5 1529 238 260 10 10 chr4 123750281 123750382 -31879738 + CT-rich Low_complexity Low_complexity 4 104 0 5 1529 190 355 11 22 chr4 123751172 123751264 -31878856 - MIR3 SINE MIR -106 102 12 5 1529 1437 221 72 28 chr4 123751311 123751670 -31878450 + MTE2a LTR MaLR 5 379 0 5 1529 225 94 0 0 chr4 123752109 123752141 -31877979 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 5 1529 207 88 0 0 chr4 123752146 123752180 -31877940 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 5 1529 953 78 2 4 chr4 123752180 123752319 -31877801 - B1_Mus2 SINE Alu -2 147 11 5 1529 450 288 17 75 chr4 123752346 123752519 -31877601 + MLT1A LTR MaLR 1 163 -211 5 1529 1081 82 0 0 chr4 123752526 123752660 -31877460 + B1_Mus1 SINE Alu 2 135 -13 5 1529 972 134 0 0 chr4 123752672 123752829 -31877291 + (GGAA)n Simple_repeat Simple_repeat 1 157 0 5 1529 202 121 30 0 chr4 123752839 123752872 -31877248 + CT-rich Low_complexity Low_complexity 1 34 0 5 1529 623 227 45 44 chr4 123752879 123753058 -31877062 + MLT1A LTR MaLR 176 347 -43 5 1529 786 307 123 20 chr4 123754011 123754304 -31875816 + ORR1E LTR MaLR 2 324 -35 5 1529 320 279 0 0 chr4 123754969 123755030 -31875090 - ID4_ SINE ID -7 76 16 5 1529 490 200 64 0 chr4 123755061 123755171 -31874949 - PB1D10 SINE Alu 0 117 1 5 1529 288 0 0 0 chr4 123755295 123755327 -31874793 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1529 798 155 8 0 chr4 123755327 123755456 -31874664 - B1_Mus2 SINE Alu -13 134 5 5 1529 322 360 73 0 chr4 123755469 123755744 -31874376 - L1ME2 LINE L1 -25 6139 5845 5 1529 1208 91 0 6 chr4 123755894 123756009 -31874111 + (TTC)n Simple_repeat Simple_repeat 1 115 0 5 1529 1557 17 0 0 chr4 123756009 123756189 -31873931 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1529 1208 91 0 6 chr4 123756189 123756250 -31873870 + (TTC)n Simple_repeat Simple_repeat 3 63 0 5 1529 264 277 0 0 chr4 123756251 123756334 -31873786 + CT-rich Low_complexity Low_complexity 3 85 0 5 1529 924 118 73 0 chr4 123756336 123756472 -31873648 - B1_Mus1 SINE Alu -2 146 1 5 1529 447 279 138 11 chr4 123756479 123756653 -31873467 + MER2 DNA MER2_type 111 306 -39 5 1529 353 227 68 0 chr4 123756763 123756851 -31873269 - L1ME2 LINE L1 -397 5767 5674 5 1529 245 184 243 37 chr4 123757214 123757321 -31872799 - L1ME2 LINE L1 -500 5679 5551 5 1529 1006 220 14 22 chr4 123757342 123757565 -31872555 - ID_B1 SINE B4 0 224 4 5 1529 448 273 67 38 chr4 123757566 123757931 -31872189 - L1ME2 LINE L1 -614 5564 5188 5 1529 967 213 35 0 chr4 123757965 123758167 -31871953 - B3 SINE B2 -6 210 2 5 1529 185 35 0 65 chr4 123758473 123758504 -31871616 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 5 1529 261 105 0 0 chr4 123758716 123758754 -31871366 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 5 1529 653 274 45 45 chr4 123758937 123759182 -31870938 - B4A SINE B4 0 292 48 5 1529 546 317 79 39 chr4 123759216 123759774 -31870346 - L1ME2 LINE L1 -1443 4703 4124 5 1529 955 191 53 24 chr4 123760235 123760444 -31869676 + B3 SINE B2 2 216 0 5 1529 1055 73 158 6 chr4 123760448 123760613 -31869507 + B2_Mm2 SINE B2 2 191 -4 5 1529 476 290 169 35 chr4 123760910 123761164 -31868956 + B4A SINE B4 1 288 -4 5 1529 219 354 11 39 chr4 123761265 123761447 -31868673 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 5 1529 254 346 48 43 chr4 123761824 123762011 -31868109 + L1M5 LINE L1 5630 5817 -307 5 1529 823 155 0 0 chr4 123762235 123762364 -31867756 - B1_Mur3 SINE Alu 0 149 21 5 1529 232 128 43 0 chr4 123762569 123762616 -31867504 + Lx4A LINE L1 7010 7058 0 5 1529 243 0 0 0 chr4 123762702 123762729 -31867391 + (CTG)n Simple_repeat Simple_repeat 1 27 0 5 1529 180 115 0 88 chr4 123762829 123762886 -31867234 + GA-rich Low_complexity Low_complexity 2 53 0 5 1529 186 43 0 0 chr4 123764727 123764750 -31865370 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 5 1529 189 0 0 0 chr4 123764826 123764847 -31865273 + (TTC)n Simple_repeat Simple_repeat 2 22 0 5 1529 254 312 83 67 chr4 123765166 123765286 -31864834 + L2b LINE L2 3254 3375 0 5 1529 236 298 16 0 chr4 123765514 123765597 -31864523 + MIRb SINE MIR 93 177 -91 5 1529 212 333 43 64 chr4 123765922 123766063 -31864057 + MIRc SINE MIR 16 153 -115 5 1529 948 105 0 0 chr4 123766148 123766291 -31863829 + (GAAA)n Simple_repeat Simple_repeat 1 143 0 5 1529 766 289 125 23 chr4 123766354 123766971 -31863149 + L1ME3B LINE L1 4154 4833 -1313 5 1529 667 218 35 0 chr4 123766978 123767120 -31863000 + B1_Mur2 SINE Alu 1 147 -2 5 1529 191 208 0 38 chr4 123767677 123767757 -31862363 + (CACCAT)n Simple_repeat Simple_repeat 4 80 0 5 1529 328 317 7 35 chr4 123767760 123767904 -31862216 + HAL1-2a_MD LINE L1 2343 2482 -542 5 1529 585 342 56 52 chr4 123768237 123768968 -31861152 + L1ME3B LINE L1 5507 6240 0 5 1529 1071 229 64 119 chr4 123769395 123769457 -31860663 - MTE2a LTR MaLR -23 356 304 5 1529 3192 45 13 5 chr4 123769457 123769854 -31860266 - MTB LTR MaLR 0 400 1 5 1529 1071 229 64 119 chr4 123769854 123769944 -31860176 - MTE2a LTR MaLR -76 303 204 5 1529 272 27 27 0 chr4 123769944 123769981 -31860139 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 1529 1071 229 64 119 chr4 123769981 123770204 -31859916 - MTE2a LTR MaLR -176 203 2 5 1529 180 273 0 22 chr4 123770610 123770655 -31859465 - L2b LINE L2 -19 3356 3313 5 1529 450 114 0 33 chr4 123770704 123770795 -31859325 + (TCC)n Simple_repeat Simple_repeat 3 90 0 5 1529 841 288 129 42 chr4 123770869 123771202 -31858918 + MLT1A0 LTR MaLR 3 364 -1 5 1529 306 350 95 21 chr4 123773082 123773272 -31856848 + LTR16C LTR ERVL 70 273 -216 5 1529 31 26 0 0 chr4 123773704 123773742 -31856378 + AT_rich Low_complexity Low_complexity 1 38 0 5 1529 205 191 0 0 chr4 123773868 123773910 -31856210 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 1529 903 156 0 7 chr4 123773910 123774052 -31856068 - B1_Mur3 SINE Alu -6 143 3 5 1529 293 306 62 82 chr4 123774560 123774706 -31855414 - MIRb SINE MIR -131 145 3 5 1529 191 261 149 64 chr4 123775214 123775308 -31854812 - MER5B DNA MER1_type -5 173 72 5 1529 245 183 17 0 chr4 123775837 123775897 -31854223 + G-rich Low_complexity Low_complexity 2 62 0 5 1529 252 229 33 0 chr4 123778046 123778107 -31852013 - MLT1A1 LTR MaLR -325 83 21 5 1529 426 39 0 0 chr4 123778587 123778639 -31851481 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1529 500 267 133 0 chr4 123779288 123779423 -31850697 + RSINE1 SINE B4 1 153 -12 5 1529 305 299 156 8 chr4 123779843 123779971 -31850149 + Tigger5 DNA MER2_type 2 148 -2258 5 1529 242 304 0 0 chr4 123780042 123780098 -31850022 - PB1D10 SINE Alu -27 90 35 5 1529 245 356 23 0 chr4 123780104 123780191 -31849929 + Tigger5 DNA MER2_type 135 223 -2183 5 1529 404 342 133 25 chr4 123780233 123780557 -31849563 + LTR78 LTR ERV1 759 1117 -187 6 1529 691 164 18 0 chr4 123780543 123780653 -31849467 - B1_Mur2 SINE Alu 0 149 38 6 1529 2391 101 0 58 chr4 123781385 123781731 -31848389 + ORR1A3 LTR MaLR 1 326 0 6 1529 251 336 94 16 chr4 123782324 123782451 -31847669 - MIRb SINE MIR -71 197 61 6 1529 234 185 56 0 chr4 123782603 123782657 -31847463 + MER96B DNA hAT 46 102 -315 6 1529 1542 53 11 0 chr4 123782827 123783016 -31847104 + B2_Mm2 SINE B2 2 192 -3 6 1529 240 111 0 0 chr4 123783042 123783078 -31847042 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1529 1018 221 68 0 chr4 123783082 123783304 -31846816 - B4 SINE B4 -42 250 14 6 1529 288 332 100 67 chr4 123783307 123783546 -31846574 + MLT1J1 LTR MaLR 185 431 -13 6 1529 319 262 94 39 chr4 123783840 123783967 -31846153 - MLT1A1 LTR MaLR -274 134 1 6 1529 378 320 32 69 chr4 123783986 123784174 -31845946 + MLT1J1-int LTR MaLR 138 318 -1069 6 1529 278 252 179 85 chr4 123784175 123784387 -31845733 + MLT1J1-int LTR MaLR 777 1008 -379 6 1529 1343 74 34 0 chr4 123784424 123784599 -31845521 - B2_Mm2 SINE B2 -14 181 1 6 1529 504 0 0 0 chr4 123784666 123784722 -31845398 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1529 736 253 43 16 chr4 123784840 123785102 -31845018 - MER44D DNA MER2_type -8 697 444 6 1529 344 315 130 22 chr4 123785110 123785295 -31844825 + L1M5 LINE L1 5544 5748 -376 6 1529 913 162 28 0 chr4 123785309 123785451 -31844669 + B1_Mus1 SINE Alu 3 148 0 6 1529 501 62 0 0 chr4 123785834 123785899 -31844221 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1529 358 318 80 50 chr4 123786077 123786276 -31843844 - B4 SINE B4 -87 205 1 6 1529 193 291 0 18 chr4 123786387 123786443 -31843677 + MIR SINE MIR 19 73 -135 6 1529 582 15 0 0 chr4 123787244 123787311 -31842809 + (TCC)n Simple_repeat Simple_repeat 3 69 0 6 1529 895 217 19 33 chr4 123787588 123787798 -31842322 - B3 SINE B2 0 216 10 6 1529 212 335 130 57 chr4 123787798 123788025 -31842095 + MIR SINE MIR 26 274 -2 6 1529 760 240 102 5 chr4 123788083 123788280 -31841840 - B3 SINE B2 0 216 1 6 1529 644 173 5 20 chr4 123788795 123788993 -31841127 + CT-rich Low_complexity Low_complexity 1 195 0 6 1529 548 216 29 43 chr4 123788996 123789136 -31840984 - B1_Mur1 SINE Alu -11 138 1 6 1529 728 274 128 31 chr4 123789141 123789471 -31840649 - MTE2b LTR MaLR -6 364 6 6 1529 369 247 99 59 chr4 123789668 123789870 -31840250 - L1MC3 LINE L1 -96 7689 7480 6 1529 530 325 112 46 chr4 123789876 123790205 -31839915 - MLT1A0 LTR MaLR -11 354 4 6 1529 750 255 126 73 chr4 123790211 123790647 -31839473 - L1MC3 LINE L1 -306 7479 7021 6 1529 41 58 0 0 chr4 123790682 123790751 -31839369 + AT_rich Low_complexity Low_complexity 1 69 0 6 1529 264 328 111 8 chr4 123790781 123790898 -31839222 + Tigger5 DNA MER2_type 83 211 -2195 6 1529 737 156 30 38 chr4 123790948 123791081 -31839039 - B1_Mur4 SINE Alu 0 150 19 6 1529 384 312 86 0 chr4 123791211 123791339 -31838781 + Tigger5 DNA MER2_type 2173 2311 -95 5 1529 365 308 112 59 chr4 123791367 123791684 -31838436 + ORR1E LTR MaLR 20 327 -43 6 1529 263 318 47 0 chr4 123791727 123791812 -31838308 + Tigger5 DNA MER2_type 2318 2406 0 5 1529 877 181 0 20 chr4 123792232 123792384 -31837736 - B1_Mur1 SINE Alu 0 149 1 6 1529 261 119 0 0 chr4 123792388 123792430 -31837690 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 6 1529 908 193 0 0 chr4 123792458 123792608 -31837512 - RSINE1 SINE B4 -13 152 3 6 1529 273 29 0 0 chr4 123792616 123792650 -31837470 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1529 464 253 0 0 chr4 123792650 123792745 -31837375 - PB1D7 SINE Alu -9 111 17 6 1529 246 341 33 11 chr4 123792677 123792769 -31837351 - B4A SINE B4 -123 169 76 6 1529 180 163 0 0 chr4 123792983 123793026 -31837094 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1529 188 289 105 0 chr4 123793599 123793675 -31836445 - MIR SINE MIR -73 135 52 6 1529 2191 148 56 29 chr4 123793716 123794092 -31836028 + ORR1B1 LTR MaLR 1 386 -8 6 1529 396 40 0 0 chr4 123794321 123794371 -31835749 + (CTG)n Simple_repeat Simple_repeat 1 50 0 6 1529 299 281 0 0 chr4 123794371 123794395 -31835725 - BC1_Mm scRNA scRNA -49 103 80 6 1529 213 39 0 0 chr4 123794395 123794421 -31835699 + (TCCCC)n Simple_repeat Simple_repeat 2 27 0 6 1529 300 228 0 0 chr4 123794421 123794478 -31835642 - ID4 SINE ID -5 78 22 6 1529 287 240 40 13 chr4 123794422 123794498 -31835622 - ID SINE ID -146 78 1 6 1529 809 274 32 43 chr4 123795464 123795742 -31834378 - B4A SINE B4 -14 278 4 6 1529 639 248 0 0 chr4 123795755 123795872 -31834248 - PB1 SINE Alu -10 117 1 6 1529 623 190 86 14 chr4 123796352 123796491 -31833629 + RSINE1 SINE B4 2 150 -15 6 1529 492 62 0 0 chr4 123796509 123796573 -31833547 + (CTAA)n Simple_repeat Simple_repeat 4 67 0 6 1529 213 39 0 0 chr4 123796941 123796967 -31833153 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1529 194 304 0 68 chr4 123797055 123797129 -31832991 - MER5B DNA MER1_type -3 175 107 6 1529 259 268 22 44 chr4 123797219 123797430 -31832690 + GA-rich Low_complexity Low_complexity 1 206 0 6 1529 387 278 52 61 chr4 123797682 123797797 -31832323 - RSINE1 SINE B4 -35 130 17 6 1529 629 270 131 30 chr4 123797886 123798202 -31831918 + RMER20B LTR ERVK 86 413 -214 6 1529 328 331 66 50 chr4 123798496 123798754 -31831366 + RMER12 LTR ERVK 727 988 -334 6 1529 608 320 67 52 chr4 123798770 123799040 -31831080 - B4 SINE B4 -16 276 3 6 1529 884 244 68 14 chr4 123799324 123799544 -31830576 - MLT1D LTR MaLR -22 483 252 6 1529 713 295 71 79 chr4 123799928 123800460 -31829660 - MLT2B2 LTR ERVL -30 524 5 6 1529 265 277 75 67 chr4 123800596 123800716 -31829404 - MLT1H LTR MaLR -180 369 249 6 1529 395 224 21 157 chr4 123800699 123800732 -31829388 - CYRA11_Mm Unknown Y-chromosome -207 410 404 6 1529 1062 121 0 19 chr4 123800732 123800892 -31829228 + URR1A DNA MER1_type 1 157 -69 6 1529 932 146 29 0 chr4 123800892 123801029 -31829091 + B1_Mus1 SINE Alu 2 142 -6 6 1529 218 148 19 0 chr4 123801058 123801112 -31829008 + (TTA)n Simple_repeat Simple_repeat 1 55 0 6 1529 271 125 0 0 chr4 123801120 123801160 -31828960 + URR1A DNA MER1_type 186 225 -1 6 1529 281 262 24 12 chr4 123801162 123801247 -31828873 - MERVL_2A-int LTR ERVL -568 5193 5108 6 1529 250 333 97 0 chr4 123801276 123801369 -31828751 - MLT1H LTR MaLR -357 192 91 6 1529 322 134 30 0 chr4 123801370 123801437 -31828683 + CT-rich Low_complexity Low_complexity 1 69 0 6 1529 258 32 0 0 chr4 123801443 123801474 -31828646 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1529 1079 87 0 0 chr4 123801474 123801612 -31828508 - B1_Mus1 SINE Alu -9 139 2 6 1529 233 284 170 2 chr4 123801714 123801851 -31828269 + MIR SINE MIR 96 265 -3 6 1529 366 299 45 64 chr4 123801932 123802089 -31828031 - MLT1A1 LTR MaLR -19 389 225 6 1529 4069 111 27 28 chr4 123802174 123802776 -31827344 + MT2B LTR ERVL 1 601 0 6 1529 363 380 63 17 chr4 123803076 123803314 -31826806 + MIRc SINE MIR 19 267 -1 6 1529 552 130 0 0 chr4 123803822 123803914 -31826206 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1529 271 315 44 11 chr4 123803930 123804020 -31826100 - B1_Mur3 SINE Alu -56 93 1 6 1529 451 226 32 11 chr4 123803941 123804035 -31826085 - B4 SINE B4 -125 167 72 6 1529 577 194 10 0 chr4 123804344 123804447 -31825673 - B1_Mur2 SINE Alu 0 149 46 6 1529 216 135 0 0 chr4 123804504 123804541 -31825579 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1529 1954 185 138 54 chr4 123804582 123805097 -31825023 - Lx9 LINE L1 -528 7116 6559 6 1529 321 269 182 15 chr4 123805194 123805326 -31824794 - RMER21B LTR ERV1 -275 567 414 6 1529 198 0 0 0 chr4 123805581 123805603 -31824517 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 6 1529 1057 278 57 4 chr4 123806143 123806407 -31823713 - B4A SINE B4 -14 278 1 6 1529 372 335 13 2 chr4 123806695 123806815 -31823305 + MLT1J LTR MaLR 63 180 -332 6 1529 1128 136 16 26 chr4 123806839 123807028 -31823092 - B2_Mm2 SINE B2 -8 187 1 6 1529 345 100 0 0 chr4 123807038 123807088 -31823032 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1529 978 228 20 5 chr4 123807088 123807280 -31822840 - B3 SINE B2 -12 204 10 6 1529 255 250 31 0 chr4 123807285 123807349 -31822771 - PB1D10 SINE Alu -6 111 46 6 1529 207 0 0 0 chr4 123807388 123807411 -31822709 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1529 1278 41 0 0 chr4 123807411 123807558 -31822562 - B1_Mus1 SINE Alu 0 148 2 6 1529 372 302 62 31 chr4 123807560 123807690 -31822430 + MLT1J LTR MaLR 196 329 -183 6 1529 770 231 93 44 chr4 123808268 123808472 -31821648 + B3 SINE B2 3 216 0 6 1529 224 372 114 7 chr4 123808599 123808748 -31821372 - MIRb SINE MIR -27 241 77 6 1529 516 32 0 0 chr4 123809287 123809349 -31820771 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 6 1529 862 293 56 48 chr4 123809654 123809923 -31820197 + B4A SINE B4 16 286 -6 6 1529 360 0 0 0 chr4 123809931 123809971 -31820149 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1529 339 44 0 0 chr4 123809971 123810015 -31820105 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1529 197 108 0 26 chr4 123810580 123810618 -31819502 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1529 300 333 90 45 chr4 123810806 123811168 -31818952 - L2c LINE L2 -5 3382 3003 6 1529 564 53 0 0 chr4 123811845 123811921 -31818199 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1529 336 150 67 0 chr4 123812667 123812727 -31817393 - MIRb SINE MIR -2 266 203 6 1529 965 235 10 15 chr4 123812959 123813165 -31816955 - MTD LTR MaLR -207 212 8 6 1529 246 297 52 93 chr4 123813315 123813508 -31816612 - L2c LINE L2 -1365 2054 1870 6 1529 1325 263 76 18 chr4 123813678 123814019 -31816101 + MTE2b LTR MaLR 1 361 -18 6 1529 844 257 6 21 chr4 123814020 123814227 -31815893 - B3A SINE B2 -17 199 2 6 1529 432 0 0 0 chr4 123814236 123814284 -31815836 + (TTA)n Simple_repeat Simple_repeat 2 49 0 7 1529 390 21 0 0 chr4 123814788 123814835 -31815285 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1529 774 0 0 0 chr4 123815061 123815147 -31814973 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 7 1529 991 280 7 52 chr4 123815511 123815816 -31814304 + B4A SINE B4 2 292 0 7 1529 429 20 0 0 chr4 123815861 123815911 -31814209 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1529 204 125 0 0 chr4 123816247 123816279 -31813841 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1529 204 244 0 0 chr4 123817262 123817303 -31812817 + L2a LINE L2 3383 3423 -3 7 1529 291 190 0 49 chr4 123817352 123817413 -31812707 + MIRc SINE MIR 91 148 -120 7 1529 408 40 0 0 chr4 123818397 123818447 -31811673 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1529 812 213 47 13 chr4 123819011 123819220 -31810900 + B3A SINE B2 1 216 0 7 1529 228 298 55 111 chr4 123821771 123821952 -31808168 + MLT1H LTR MaLR 33 203 -346 7 1529 1800 135 131 6 chr4 123821992 123822306 -31807814 + ORR1B1 LTR MaLR 42 394 0 7 1529 696 169 0 0 chr4 123822525 123822655 -31807465 + GA-rich Low_complexity Low_complexity 3 132 0 7 1529 1296 109 3 0 chr4 123822656 123823014 -31807106 + (GGA)n Simple_repeat Simple_repeat 1 359 0 7 1529 376 281 67 29 chr4 123823957 123824154 -31805966 + MIRb SINE MIR 52 263 -5 7 1529 811 295 8 54 chr4 123824164 123824422 -31805698 - B4 SINE B4 0 292 47 7 1529 498 259 27 0 chr4 123824587 123824699 -31805421 - PB1D10 SINE Alu 0 117 3 7 1529 230 309 28 93 chr4 123824605 123824712 -31805408 - MT2B2 LTR ERVL -329 255 156 7 1529 186 299 52 0 chr4 123824773 123824850 -31805270 - MIRb SINE MIR -132 136 56 7 1529 185 321 82 30 chr4 123824841 123824976 -31805144 + L2c LINE L2 2938 3079 -308 7 1529 344 256 58 0 chr4 123825415 123825536 -31804584 - MER53 DNA hAT -65 128 1 7 1529 297 0 0 0 chr4 123825629 123825662 -31804458 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1529 333 0 0 0 chr4 123825662 123825698 -31804422 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1529 729 244 86 82 chr4 123825717 123825985 -31804135 - B4 SINE B4 -16 276 8 7 1529 2686 111 63 2 chr4 123826226 123826623 -31803497 + MTC LTR MaLR 1 421 0 7 1529 482 222 25 25 chr4 123828260 123828380 -31801740 - PB1D9 SINE Alu 0 120 1 7 1529 220 330 117 18 chr4 123828384 123828495 -31801625 + MIR SINE MIR 32 153 -55 7 1529 264 244 15 18 chr4 123828742 123828808 -31801312 - MLT1H2 LTR MaLR 0 489 436 7 1529 728 262 7 0 chr4 123828810 123828959 -31801161 + RSINE1 SINE B4 2 151 -14 7 1529 254 273 0 139 chr4 123828960 123829075 -31801045 - MLT1H LTR MaLR -31 548 450 7 1529 346 294 35 44 chr4 123829256 123829370 -31800750 - MLT1H LTR MaLR -328 221 109 7 1529 751 180 0 12 chr4 123829554 123829718 -31800402 + CT-rich Low_complexity Low_complexity 6 167 0 7 1529 1515 28 0 0 chr4 123829718 123829898 -31800222 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 7 1529 1692 234 21 31 chr4 123830658 123831041 -31799079 - MTE2b LTR MaLR 0 379 1 7 1529 2010 119 12 51 chr4 123831600 123831935 -31798185 - RLTRETN_Mm LTR ERVK 0 322 1 7 1529 552 285 19 32 chr4 123832301 123832457 -31797663 + RSINE1 SINE B4 3 156 -9 7 1529 1357 24 0 26 chr4 123832485 123832906 -31797214 + (TAGA)n Simple_repeat Simple_repeat 1 409 0 7 1529 291 28 0 0 chr4 123832906 123832942 -31797178 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 7 1529 1460 62 0 3 chr4 123832942 123833281 -31796839 + (TAGA)n Simple_repeat Simple_repeat 1 338 0 7 1529 334 300 40 0 chr4 123834092 123834192 -31795928 + MIRc SINE MIR 3 106 -162 7 1529 313 261 0 0 chr4 123834841 123834929 -31795191 + L1ME4a LINE L1 5347 5434 -690 7 1529 415 308 48 43 chr4 123835290 123835500 -31794620 + L1ME4a LINE L1 5735 5945 -179 7 1529 537 16 0 0 chr4 123835664 123835726 -31794394 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1529 1452 226 50 22 chr4 123835731 123836089 -31794031 + ORR1D2 LTR MaLR 1 368 -2 7 1529 360 0 0 0 chr4 123836099 123836139 -31793981 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1529 452 268 147 64 chr4 123836172 123836423 -31793697 - B4 SINE B4 -18 274 3 7 1529 567 0 0 0 chr4 123836557 123836620 -31793500 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1529 958 222 43 0 chr4 123836981 123837166 -31792954 + B3A SINE B2 1 193 -5 7 1529 402 21 0 0 chr4 123837198 123837245 -31792875 + (CAAGG)n Simple_repeat Simple_repeat 2 48 0 7 1529 288 290 108 20 chr4 123837351 123837453 -31792667 + MIR SINE MIR 74 184 -78 7 1529 233 195 0 0 chr4 123838521 123838562 -31791558 - Charlie4z DNA MER1_type -34 133 93 7 1529 432 0 0 0 chr4 123838562 123838610 -31791510 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1529 338 241 151 35 chr4 123838635 123838721 -31791399 + PB1D10 SINE Alu 1 96 -21 7 1529 2473 107 23 86 chr4 123838925 123838996 -31791124 - MTB_Mm LTR MaLR 0 407 347 7 1529 1376 76 16 5 chr4 123838996 123839181 -31790939 - B2_Mm2 SINE B2 -8 187 1 7 1529 2473 107 23 86 chr4 123839181 123839538 -31790582 - MTB_Mm LTR MaLR -61 346 6 7 1529 377 315 61 107 chr4 123839966 123840325 -31789795 - MLT1C LTR MaLR -18 449 42 7 1529 383 269 40 8 chr4 123840778 123840900 -31789220 + MTEa LTR MaLR 1 127 -281 7 1529 1215 125 0 6 chr4 123840988 123841002 -31789118 - B2_Mm2 SINE B2 -18 177 164 7 1529 270 0 0 0 chr4 123841002 123841032 -31789088 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 7 1529 1215 125 0 6 chr4 123841032 123841194 -31788926 - B2_Mm2 SINE B2 -32 163 2 7 1529 547 191 53 138 chr4 123841223 123841411 -31788709 + MTEa LTR MaLR 201 372 -7 7 1529 261 0 0 0 chr4 123841516 123841545 -31788575 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1529 840 236 113 42 chr4 123841841 123842106 -31788014 + B4 SINE B4 1 284 -8 7 1529 1182 83 0 0 chr4 123842403 123842571 -31787549 + (TCC)n Simple_repeat Simple_repeat 2 169 0 7 1529 521 264 14 65 chr4 123842572 123842710 -31787410 - B4 SINE B4 -93 199 69 7 1529 670 186 8 48 chr4 123842705 123842829 -31787291 - PB1D9 SINE Alu 0 120 2 7 1529 579 242 136 93 chr4 123842707 123842835 -31787285 - B4 SINE B4 -69 223 82 7 1529 207 0 0 0 chr4 123842835 123842858 -31787262 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1529 579 242 136 93 chr4 123842858 123842943 -31787177 - B4 SINE B4 -211 81 1 7 1529 385 282 0 0 chr4 123843312 123843397 -31786723 + ID_B1 SINE B4 82 166 -58 7 1529 497 167 87 19 chr4 123843404 123843508 -31786612 - PB1D9 SINE Alu -9 111 1 7 1529 441 0 0 0 chr4 123843757 123843806 -31786314 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1529 474 18 0 0 chr4 123844285 123844340 -31785780 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1529 613 281 194 20 chr4 123844345 123844592 -31785528 + B4A SINE B4 3 292 0 7 1529 2529 95 3 0 chr4 123846105 123846431 -31783689 - ORR1A2 LTR MaLR 0 327 1 7 1529 634 252 0 37 chr4 123846432 123846568 -31783552 - B1F SINE Alu -16 133 3 7 1529 575 176 46 9 chr4 123847034 123847143 -31782977 - B1_Mus1 SINE Alu -34 114 2 7 1529 417 268 150 34 chr4 123847651 123847798 -31782322 + MER20 DNA MER1_type 1 164 -55 7 1529 747 258 114 23 chr4 123848447 123848709 -31781411 - B4A SINE B4 -6 286 1 7 1529 679 231 90 0 chr4 123848770 123848904 -31781216 + RSINE1 SINE B4 3 148 -17 7 1529 282 73 0 0 chr4 123848907 123848948 -31781172 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 7 1529 191 305 16 48 chr4 123849077 123849139 -31780981 - L2a LINE L2 -18 3408 3349 7 1529 255 189 0 0 chr4 123850401 123850454 -31779666 + CT-rich Low_complexity Low_complexity 6 58 0 7 1529 823 196 27 0 chr4 123850497 123850674 -31779446 - B3 SINE B2 0 198 6 7 1529 605 119 0 10 chr4 123850723 123850825 -31779295 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 1529 615 206 18 0 chr4 123850835 123851005 -31779115 + (TG)n Simple_repeat Simple_repeat 1 173 0 7 1529 590 240 0 6 chr4 123851116 123851288 -31778832 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 1529 461 273 42 35 chr4 123851895 123852039 -31778081 - MER2 DNA MER2_type -5 340 196 7 1529 482 0 17 0 chr4 123852039 123852097 -31778023 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1529 751 264 7 20 chr4 123852104 123852255 -31777865 - RSINE1 SINE B4 -14 151 3 7 1529 965 196 86 29 chr4 123852320 123852530 -31777590 - ID_B1 SINE B4 0 224 3 7 1529 659 324 44 18 chr4 123852532 123852758 -31777362 - MER2 DNA MER2_type -113 232 1 7 1529 1143 128 10 36 chr4 123853689 123853884 -31776236 + B2_Mm2 SINE B2 6 195 0 7 1529 189 0 0 0 chr4 123853956 123853977 -31776143 + (CACCC)n Simple_repeat Simple_repeat 5 25 0 7 1529 443 252 0 61 chr4 123854084 123854198 -31775922 + PB1D10 SINE Alu 1 107 -10 7 1529 774 271 17 52 chr4 123854659 123854889 -31775231 - ID_B1 SINE B4 -2 222 1 7 1529 563 292 6 28 chr4 123854915 123855091 -31775029 - B3A SINE B2 0 198 27 7 1529 191 403 0 0 chr4 123855124 123855191 -31774929 - MIRb SINE MIR -41 227 161 7 1529 265 333 115 18 chr4 123855414 123855527 -31774593 + MIR SINE MIR 21 144 -118 7 1529 29 0 0 0 chr4 123855896 123855925 -31774195 + GC_rich Low_complexity Low_complexity 1 29 0 7 1529 749 257 111 37 chr4 123856947 123857218 -31772902 - B4 SINE B4 0 292 2 7 1529 22 56 0 0 chr4 123857646 123857682 -31772438 + AT_rich Low_complexity Low_complexity 1 36 0 7 1529 221 301 63 21 chr4 123858220 123858315 -31771805 + MIRc SINE MIR 37 135 -133 7 1529 1195 54 0 7 chr4 123858408 123858549 -31771571 + B1_Mus1 SINE Alu 1 141 -7 7 1529 207 0 0 0 chr4 123858549 123858572 -31771548 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1529 247 130 37 0 chr4 123858581 123858635 -31771485 + GA-rich Low_complexity Low_complexity 2 57 0 7 1529 199 162 0 0 chr4 123859663 123859700 -31770420 + MIRc SINE MIR 80 116 -152 8 1529 809 230 285 27 chr4 123859782 123860077 -31770043 + ORR1D1 LTR MaLR 3 373 -1 8 1529 540 0 0 0 chr4 123860131 123860191 -31769929 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1529 216 0 0 0 chr4 123860191 123860214 -31769906 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1529 2366 238 99 67 chr4 123860233 123860944 -31769176 - RMER13A LTR ERVK -55 805 1 8 1529 508 262 15 156 chr4 123860944 123861013 -31769107 - MT2B LTR ERVL -428 173 112 8 1529 512 29 29 0 chr4 123861013 123861082 -31769038 + (TATG)n Simple_repeat Simple_repeat 2 72 0 8 1529 508 262 15 156 chr4 123861082 123861211 -31768909 - MT2B LTR ERVL -490 111 3 8 1529 1932 126 152 3 chr4 123861722 123861826 -31768294 + ORR1B1 LTR MaLR 2 136 -258 8 1529 2821 113 40 7 chr4 123861826 123862253 -31767867 + BGLII_B LTR ERVK 1 441 0 8 1529 1932 126 152 3 chr4 123862253 123862490 -31767630 + ORR1B1 LTR MaLR 137 394 0 8 1529 299 250 124 9 chr4 123862692 123862805 -31767315 - L2b LINE L2 -35 3340 3215 8 1530 993 250 5 14 chr4 123863568 123863791 -31766329 - ID_B1 SINE B4 -2 222 2 8 1530 717 303 90 39 chr4 123863791 123864179 -31765941 + ORSL-2b DNA Tip100 101 508 0 8 1530 377 250 31 0 chr4 123865426 123865519 -31764601 + B4A SINE B4 2 97 -195 8 1530 595 226 114 45 chr4 123865519 123865695 -31764425 + B3 SINE B2 1 188 -28 8 1530 543 31 0 0 chr4 123865705 123865770 -31764350 + (GGGAGA)n Simple_repeat Simple_repeat 3 67 0 8 1530 1418 39 0 11 chr4 123865775 123865957 -31764163 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1530 669 286 83 0 chr4 123865981 123866149 -31763971 + B4A SINE B4 111 292 0 8 1530 288 374 62 12 chr4 123867412 123867572 -31762548 - MIRc SINE MIR -70 198 31 8 1530 192 279 115 0 chr4 123868565 123868626 -31761494 - MIRc SINE MIR -115 153 86 8 1530 296 299 80 26 chr4 123868748 123868899 -31761221 - MIR SINE MIR -90 172 14 8 1530 293 155 17 0 chr4 123868899 123868957 -31761163 + GA-rich Low_complexity Low_complexity 4 62 0 8 1530 229 255 100 60 chr4 123869216 123869316 -31760804 - LTR79 LTR ERVL -294 233 130 8 1530 211 254 11 88 chr4 123869814 123869897 -31760223 - L2b LINE L2 -192 3183 3108 8 1530 1004 271 113 0 chr4 123870063 123870355 -31759765 - MamRep137 DNA TcMar? -85 359 35 8 1530 764 237 56 20 chr4 123870504 123870702 -31759418 - MARNA DNA Mariner -154 432 228 8 1530 222 0 65 65 chr4 123871413 123871459 -31758661 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 1530 536 71 125 34 chr4 123871459 123871547 -31758573 - B1_Mur4 SINE Alu -12 138 43 8 1530 394 0 0 162 chr4 123871550 123871760 -31758360 + (CTCTG)n Simple_repeat Simple_repeat 5 180 0 8 1530 402 85 0 33 chr4 123871761 123871822 -31758298 - B1_Mus1 SINE Alu -88 60 2 8 1530 319 198 90 90 chr4 123871822 123871865 -31758255 - B4A SINE B4 -207 85 43 8 1530 307 311 145 22 chr4 123872238 123872376 -31757744 + RSINE1 SINE B4 11 165 0 8 1530 264 336 65 19 chr4 123873660 123873797 -31756323 + MIR SINE MIR 18 158 -110 8 1530 192 306 68 14 chr4 123874658 123874731 -31755389 - MIRb SINE MIR -72 196 120 8 1530 214 286 130 20 chr4 123874950 123875050 -31755070 + MIRc SINE MIR 20 130 -138 8 1530 327 186 80 33 chr4 123875055 123875077 -31755043 - RMER17D LTR ERVK -514 375 353 8 1530 596 14 14 0 chr4 123875077 123875150 -31754970 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 8 1530 327 186 80 33 chr4 123875150 123875277 -31754843 - RMER17D LTR ERVK -537 352 219 8 1530 388 259 235 25 chr4 123875537 123875699 -31754421 + B3A SINE B2 3 198 0 8 1530 180 111 0 0 chr4 123875790 123875817 -31754303 + (CACG)n Simple_repeat Simple_repeat 1 27 0 8 1530 308 289 78 9 chr4 123875861 123876025 -31754095 - MIRb SINE MIR -66 196 16 8 1530 387 289 93 56 chr4 123876844 123877005 -31753115 + MIRb SINE MIR 94 260 -8 8 1530 609 252 34 13 chr4 123878398 123878547 -31751573 + RSINE1 SINE B4 2 153 -12 8 1530 561 96 0 0 chr4 123878548 123878642 -31751478 + (TC)n Simple_repeat Simple_repeat 1 94 0 8 1530 230 75 50 0 chr4 123878644 123878684 -31751436 + (CAGAGA)n Simple_repeat Simple_repeat 6 47 0 8 1530 297 272 21 42 chr4 123879457 123879553 -31750567 - RSINE1 SINE B4 -70 95 2 8 1530 1279 239 135 19 chr4 123879590 123879953 -31750167 - MTD LTR MaLR -14 405 1 8 1530 367 238 88 44 chr4 123879976 123880112 -31750008 - MIRb SINE MIR -101 167 26 8 1530 226 328 0 0 chr4 123880130 123880191 -31749929 + CT-rich Low_complexity Low_complexity 4 64 0 8 1530 2039 220 37 3 chr4 123881294 123881677 -31748443 + MTD LTR MaLR 24 419 0 8 1530 1091 165 67 0 chr4 123882087 123882281 -31747839 + B3 SINE B2 8 214 -2 8 1530 475 283 128 102 chr4 123882422 123882750 -31747370 - ORR1E LTR MaLR -24 355 1 8 1530 504 0 0 0 chr4 123882827 123882883 -31747237 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1530 402 74 0 0 chr4 123882883 123882936 -31747184 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1530 565 291 94 11 chr4 123883074 123883255 -31746865 + MER63A DNA AcHobo 10 205 -5 8 1530 374 285 54 0 chr4 123883384 123883515 -31746605 - MIR3 SINE MIR -32 176 42 8 1530 425 317 108 74 chr4 123884363 123884918 -31745202 + L2b LINE L2 2232 2805 -614 8 1530 260 111 22 0 chr4 123885319 123885364 -31744756 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 8 1530 558 29 0 0 chr4 123885364 123885432 -31744688 + (TATG)n Simple_repeat Simple_repeat 3 70 0 8 1530 1163 74 0 0 chr4 123885432 123885580 -31744540 - B2_Mm2 SINE B2 -47 148 1 8 1530 1375 87 16 0 chr4 123885613 123885796 -31744324 - B2_Mm2 SINE B2 -8 187 2 8 1530 1003 252 108 0 chr4 123885797 123886019 -31744101 - B4A SINE B4 -41 251 6 8 1530 231 318 59 0 chr4 123886083 123886168 -31743952 + L2b LINE L2 3266 3355 -20 8 1530 243 188 0 0 chr4 123886963 123887011 -31743109 + (CAT)n Simple_repeat Simple_repeat 1 48 0 8 1530 756 294 18 23 chr4 123887075 123887294 -31742826 - ID_B1 SINE B4 -2 222 5 8 1530 441 356 93 77 chr4 123887956 123888333 -31741787 - MLT1I LTR MaLR -27 384 2 8 1530 303 71 0 0 chr4 123888602 123888644 -31741476 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1530 359 186 0 23 chr4 123889566 123889654 -31740466 + (CATA)n Simple_repeat Simple_repeat 4 89 0 8 1530 534 231 25 10 chr4 123890007 123890134 -31739986 + B1F SINE Alu 1 126 -21 8 1530 878 211 22 17 chr4 123890193 123890371 -31739749 - B3A SINE B2 -17 181 3 8 1530 330 290 98 15 chr4 123890423 123890556 -31739564 - MLT2B4 LTR ERVL -85 471 328 8 1530 376 212 47 0 chr4 123890667 123890752 -31739368 - MLT2B4 LTR ERVL -465 91 3 8 1530 186 103 0 0 chr4 123890777 123890806 -31739314 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 8 1530 748 206 22 0 chr4 123891775 123891911 -31738209 + B1F1 SINE Alu 1 139 -10 8 1530 429 70 0 0 chr4 123891918 123891975 -31738145 + (CATA)n Simple_repeat Simple_repeat 2 58 0 8 1530 356 155 99 0 chr4 123892252 123892323 -31737797 - PB1D7 SINE Alu -1 119 42 8 1530 591 15 0 0 chr4 123892663 123892731 -31737389 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1530 468 0 0 0 chr4 123892734 123892786 -31737334 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1530 405 266 35 9 chr4 123893134 123893248 -31736872 + PB1D10 SINE Alu 1 117 0 8 1530 755 159 3 20 chr4 123893263 123893413 -31736707 + B1_Mur2 SINE Alu 1 147 -2 8 1530 203 81 0 51 chr4 123893415 123893454 -31736666 + (CAA)n Simple_repeat Simple_repeat 3 39 0 8 1530 403 227 14 82 chr4 123893586 123893709 -31736411 - PB1 SINE Alu 0 120 8 8 1530 207 257 213 65 chr4 123895080 123895188 -31734932 - MIR SINE MIR -69 139 16 8 1530 367 311 10 0 chr4 123895189 123895292 -31734828 + Charlie9 DNA MER1_type 3 106 -2651 8 1530 390 42 0 0 chr4 123895335 123895383 -31734737 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1530 259 325 8 31 chr4 123895407 123895537 -31734583 + (TATG)n Simple_repeat Simple_repeat 3 129 0 8 1530 851 204 108 115 chr4 123895596 123895884 -31734236 + B4 SINE B4 2 287 -5 8 1530 224 283 0 0 chr4 123895902 123895955 -31734165 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1530 690 13 0 0 chr4 123895956 123896035 -31734085 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 8 1530 409 347 89 0 chr4 123896078 123896291 -31733829 - MIRb SINE MIR -6 262 31 8 1530 383 195 297 0 chr4 123896785 123896913 -31733207 + L1ME4a LINE L1 5884 6049 -75 8 1530 376 322 44 33 chr4 123897380 123897563 -31732557 - MIR SINE MIR -72 190 6 8 1530 519 17 0 0 chr4 123897631 123897691 -31732429 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1530 222 333 0 0 chr4 123897695 123897743 -31732377 - ID4_ SINE ID -14 69 22 8 1530 217 146 100 40 chr4 123897757 123897807 -31732313 - PB1D10 SINE Alu 0 117 65 8 1530 200 273 0 18 chr4 123897998 123898054 -31732066 + MIR3 SINE MIR 108 156 -52 8 1530 387 0 0 0 chr4 123899026 123899069 -31731051 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1530 685 311 78 71 chr4 123900213 123900589 -31729531 - MLT1F2 LTR MaLR -2 558 173 8 1530 439 244 203 0 chr4 123900589 123900712 -31729408 - B1F SINE Alu 0 149 2 8 1530 685 311 78 71 chr4 123900712 123900812 -31729308 - MLT1F2 LTR MaLR -388 172 79 8 1530 277 279 159 23 chr4 123900900 123901032 -31729088 - MIRb SINE MIR -115 153 4 8 1530 432 306 43 7 chr4 123901681 123901819 -31728301 + B1F SINE Alu 5 147 -2 8 1530 357 236 23 11 chr4 123901982 123902158 -31727962 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1530 224 244 77 99 chr4 123902837 123902928 -31727192 + MIRc SINE MIR 116 204 -64 8 1530 292 295 106 0 chr4 123903052 123903165 -31726955 - MIRc SINE MIR -121 147 20 8 1530 235 178 0 0 chr4 123903334 123903379 -31726741 + L1MB3 LINE L1 4870 4914 -1232 8 1530 799 244 0 79 chr4 123903425 123903603 -31726517 + RSINE1 SINE B4 2 165 0 9 1530 337 309 115 60 chr4 123903654 123903888 -31726232 + L1MB3 LINE L1 4951 5197 -949 8 1530 211 265 0 0 chr4 123903904 123903953 -31726167 + PB1D10 SINE Alu 32 80 -37 9 1530 342 272 43 22 chr4 123904060 123904199 -31725921 + L1MB3 LINE L1 5341 5482 -809 8 1530 647 278 53 0 chr4 123904209 123904360 -31725760 + RSINE1 SINE B4 2 160 -5 9 1530 553 301 148 15 chr4 123904403 123904869 -31725251 + L1MB3 LINE L1 5470 6001 -179 8 1530 210 71 0 0 chr4 123904883 123904911 -31725209 + (TGG)n Simple_repeat Simple_repeat 1 28 0 9 1530 245 214 52 125 chr4 123904929 123905025 -31725095 + L1MB3 LINE L1 6095 6183 0 8 1530 28 48 0 0 chr4 123905065 123905107 -31725013 + AT_rich Low_complexity Low_complexity 1 42 0 9 1530 267 255 71 41 chr4 123906571 123906669 -31723451 - L2a LINE L2 0 3426 3326 9 1530 267 295 178 19 chr4 123907168 123907275 -31722845 - ID_B1 SINE B4 -6 218 95 9 1530 266 306 97 18 chr4 123908462 123908575 -31721545 - B4 SINE B4 -18 274 153 9 1530 906 258 27 0 chr4 123908616 123908802 -31721318 - B3 SINE B2 -14 202 12 9 1530 276 292 10 37 chr4 123908798 123908895 -31721225 - RSINE1 SINE B4 -198 94 3 9 1530 378 303 91 107 chr4 123908945 123909120 -31721000 - L1MC4 LINE L1 -1 8041 7891 9 1530 240 86 0 0 chr4 123909120 123909155 -31720965 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1530 378 303 91 107 chr4 123909155 123909363 -31720757 - L1MC4 LINE L1 -152 7890 7664 9 1530 426 255 75 32 chr4 123909541 123909699 -31720421 + MLT1C LTR MaLR 7 177 -328 9 1530 236 182 0 22 chr4 123909804 123909849 -31720271 + G-rich Low_complexity Low_complexity 3 46 0 9 1530 459 338 112 23 chr4 123909862 123910077 -31720043 + MLT1C LTR MaLR 234 467 0 9 1530 358 267 0 29 chr4 123911579 123911683 -31718437 + PB1D10 SINE Alu 1 101 -16 9 1530 341 287 0 19 chr4 123911684 123911787 -31718333 + GA-rich Low_complexity Low_complexity 1 101 0 9 1530 287 132 15 0 chr4 123911942 123912010 -31718110 + (TC)n Simple_repeat Simple_repeat 1 69 0 9 1530 270 0 0 0 chr4 123912222 123912252 -31717868 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1530 789 11 0 0 chr4 123912252 123912341 -31717779 + (GA)n Simple_repeat Simple_repeat 1 90 0 9 1530 342 315 80 33 chr4 123912607 123912758 -31717362 + MIRc SINE MIR 2 159 -109 9 1530 276 304 0 42 chr4 123912958 123913054 -31717066 - Tigger5 DNA MER2_type -1 2405 2314 9 1530 201 74 0 0 chr4 123914740 123914767 -31715353 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 9 1530 221 245 19 0 chr4 123914768 123914821 -31715299 - L4 LINE RTE -15 2014 1961 9 1530 293 288 0 14 chr4 123915279 123915353 -31714767 + B4A SINE B4 80 152 -140 9 1530 522 261 4 17 chr4 123915290 123915419 -31714701 + B1F SINE Alu 5 136 -13 9 1530 250 129 0 41 chr4 123915419 123915492 -31714628 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 9 1530 186 333 16 0 chr4 123916168 123916231 -31713889 - L2c LINE L2 -38 3349 3286 9 1530 190 170 42 21 chr4 123916300 123916348 -31713772 + MIRc SINE MIR 93 141 -127 9 1530 837 211 175 21 chr4 123916372 123916561 -31713559 - ID_B1 SINE B4 -5 219 2 9 1530 187 281 75 43 chr4 123916562 123916655 -31713465 + MIRb SINE MIR 130 225 -43 9 1530 302 293 209 9 chr4 123916698 123916908 -31713212 - L2c LINE L2 -38 3349 3098 9 1530 328 200 220 11 chr4 123917089 123917180 -31712940 + L2a LINE L2 3315 3424 -2 9 1530 2289 168 16 49 chr4 123917637 123918064 -31712056 + MTC LTR MaLR 1 413 -8 9 1530 335 298 23 39 chr4 123920059 123920188 -31709932 + MER5A DNA MER1_type 63 189 0 9 1530 670 252 42 0 chr4 123920548 123920691 -31709429 + RSINE1 SINE B4 2 150 -15 9 1530 305 93 19 0 chr4 123920692 123920746 -31709374 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1530 235 316 13 13 chr4 123920898 123920975 -31709145 + ID4_ SINE ID 4 80 -3 9 1530 917 226 9 61 chr4 123922700 123922931 -31707189 + Lx8 LINE L1 6469 6687 -786 9 1530 1311 151 84 4 chr4 123922948 123923174 -31706946 - RLTR20D LTR ERVK -324 244 1 9 1530 1415 210 149 8 chr4 123923174 123923359 -31706761 + Lx8 LINE L1 6682 6877 -596 9 1530 297 0 0 0 chr4 123923359 123923392 -31706728 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1530 1415 210 149 8 chr4 123923392 123923594 -31706526 + Lx8 LINE L1 6878 7123 -350 9 1530 240 328 103 32 chr4 123923792 123923918 -31706202 + MLT1D LTR MaLR 301 491 -136 9 1530 213 159 0 0 chr4 123923970 123924014 -31706106 + (TATG)n Simple_repeat Simple_repeat 2 45 0 9 1530 283 302 74 55 chr4 123924441 123924658 -31705462 - MIRb SINE MIR -11 257 37 9 1530 342 274 0 14 chr4 123924781 123924855 -31705265 + L2b LINE L2 3301 3373 -2 9 1530 860 242 5 67 chr4 123925768 123925976 -31704144 - RMER30 DNA MER1_type 0 202 8 9 1530 1410 172 92 160 chr4 123926077 123926478 -31703642 - ORR1D1 LTR MaLR 0 374 1 9 1530 228 277 0 0 chr4 123926562 123926609 -31703511 + polypurine Low_complexity Low_complexity 3 49 0 9 1530 1176 202 9 18 chr4 123926684 123926911 -31703209 - URR1B DNA MER1_type 0 225 1 9 1530 1044 257 5 0 chr4 123927282 123927500 -31702620 - ID_B1 SINE B4 -1 223 5 9 1530 2371 108 6 0 chr4 123927501 123927826 -31702294 - ORR1A2 LTR MaLR 0 327 1 9 1530 222 105 0 0 chr4 123928027 123928065 -31702055 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 9 1530 461 264 135 27 chr4 123930079 123930227 -31699893 - RSINE1 SINE B4 -1 164 1 9 1530 394 283 47 9 chr4 123930363 123930470 -31699650 + MIR SINE MIR 60 170 -92 9 1530 985 135 13 13 chr4 123930488 123930638 -31699482 + B1_Mur4 SINE Alu 1 150 0 9 1530 333 0 0 0 chr4 123931533 123931570 -31698550 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1530 692 249 185 8 chr4 123932898 123933141 -31696979 + B4 SINE B4 1 286 -6 9 1530 255 216 118 49 chr4 123933369 123933471 -31696649 + MamRep434 DNA TcMar 99 207 -219 9 1530 552 279 68 81 chr4 123934826 123935211 -31694909 - MLT2B4 LTR ERVL -40 527 50 9 1530 186 143 0 0 chr4 123938034 123938069 -31692051 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1530 760 138 15 44 chr4 123938101 123938237 -31691883 - B1_Mus2 SINE Alu -10 137 6 9 1530 337 239 91 139 chr4 123938237 123938266 -31691854 - B4 SINE B4 -76 216 60 9 1530 522 0 0 0 chr4 123938408 123938466 -31691654 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1530 453 250 110 0 chr4 123938484 123938584 -31691536 - RSINE1 SINE B4 -43 122 12 9 1530 2351 132 201 20 chr4 123938724 123939211 -31690909 - RMER4B LTR ERVK -10 575 1 9 1530 288 314 0 38 chr4 123939426 123939532 -31690588 + RSINE1 SINE B4 3 104 -61 9 1530 634 242 32 0 chr4 123939596 123939720 -31690400 + B1F2 SINE Alu 10 137 -12 9 1530 234 0 0 0 chr4 123939720 123939746 -31690374 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1530 315 177 0 0 chr4 123939978 123940040 -31690080 + T-rich Low_complexity Low_complexity 1 62 0 9 1530 1155 108 0 0 chr4 123940040 123940188 -31689932 - B1_Mus1 SINE Alu 0 148 1 9 1530 258 188 0 48 chr4 123940335 123940419 -31689701 + CT-rich Low_complexity Low_complexity 2 81 0 9 1530 186 43 0 0 chr4 123940493 123940516 -31689604 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1530 835 119 17 0 chr4 123940516 123940634 -31689486 - PB1D9 SINE Alu 0 120 1 9 1530 323 288 0 12 chr4 123940704 123940785 -31689335 + RSINE1 SINE B4 84 163 -2 9 1530 297 0 0 0 chr4 123940864 123940897 -31689223 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 9 1530 331 306 163 7 chr4 123941669 123941804 -31688316 + MLT1B LTR MaLR 1 156 -234 9 1530 225 0 0 0 chr4 123941804 123941829 -31688291 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 9 1530 485 264 116 42 chr4 123941897 123942087 -31688033 + MLT1B LTR MaLR 164 367 -23 9 1530 439 265 26 33 chr4 123943528 123943680 -31686440 + L1MA9 LINE L1 6132 6282 -30 9 1530 327 263 79 20 chr4 123945755 123945856 -31684264 - MER3 DNA MER1_type -86 123 17 9 1530 478 242 0 10 chr4 123946075 123946171 -31683949 + ORR1D2 LTR MaLR 9 103 -267 9 1530 378 120 0 0 chr4 123946201 123946276 -31683844 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 9 1530 554 311 132 16 chr4 123946515 123946757 -31683363 - L3 LINE CR1 -5 4484 4215 9 1530 292 277 126 0 chr4 123947235 123947354 -31682766 - MIR SINE MIR -20 242 109 9 1530 238 301 14 14 chr4 123947476 123947550 -31682570 - MIRb SINE MIR -80 188 115 9 1530 677 323 19 84 chr4 123948388 123948699 -31681421 - ORR1E LTR MaLR -65 294 4 9 1530 267 380 133 4 chr4 123948700 123948956 -31681164 - L2a LINE L2 -206 3220 2932 9 1530 659 293 113 38 chr4 123949825 123950087 -31680033 - L1MB7 LINE L1 -21 6163 5870 9 1530 994 152 202 0 chr4 123950087 123950265 -31679855 - B3 SINE B2 -1 215 2 9 1530 659 293 113 38 chr4 123950265 123950471 -31679649 - L1MB7 LINE L1 -315 5869 5660 9 1530 383 290 220 16 chr4 123950576 123950762 -31679358 - MTD LTR MaLR 0 419 196 9 1530 234 222 0 0 chr4 123950763 123950817 -31679303 + CT-rich Low_complexity Low_complexity 3 56 0 9 1530 938 229 9 28 chr4 123950822 123951033 -31679087 - B3 SINE B2 -9 207 1 9 1530 926 251 5 19 chr4 123951034 123951245 -31678875 - MTD LTR MaLR -209 210 3 9 1530 261 119 0 0 chr4 123951295 123951337 -31678783 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 9 1530 489 258 31 24 chr4 123951339 123951466 -31678654 - ID_B1 SINE B4 -10 214 87 9 1530 318 302 38 38 chr4 123951556 123951687 -31678433 - L1MB7 LINE L1 -755 5391 5261 9 1530 461 278 29 88 chr4 123951688 123951702 -31678418 - B2_Mm2 SINE B2 -1 194 181 9 1530 1200 176 14 5 chr4 123951702 123951925 -31678195 - Lx4B LINE L1 -2 7056 6832 9 1530 640 278 29 88 chr4 123951925 123952115 -31678005 - B3A SINE B2 0 198 2 9 1530 722 293 88 11 chr4 123952129 123952502 -31677618 - L1MB7 LINE L1 -896 5250 4849 9 1530 530 320 52 113 chr4 123952535 123952729 -31677391 + B3A SINE B2 1 182 -16 9 1530 354 138 0 0 chr4 123952733 123952791 -31677329 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 9 1530 888 118 0 0 chr4 123953404 123953540 -31676580 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 9 1530 1132 51 0 21 chr4 123953540 123953680 -31676440 - B1_Mus1 SINE Alu -10 138 2 9 1530 211 200 0 0 chr4 123953765 123953800 -31676320 + polypyrimidine Low_complexity Low_complexity 2 36 0 9 1530 204 298 24 0 chr4 123955632 123955716 -31674404 + GA-rich Low_complexity Low_complexity 1 86 0 9 1530 1455 39 0 0 chr4 123955716 123955894 -31674226 + (GA)n Simple_repeat Simple_repeat 1 178 0 9 1530 2059 299 104 23 chr4 123956704 123956827 -31673293 - Lx8 LINE L1 0 7473 7328 9 1530 396 0 0 0 chr4 123956827 123956871 -31673249 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1530 2059 299 104 23 chr4 123956871 123957828 -31672292 - Lx8 LINE L1 -146 7327 6306 9 1530 590 298 76 111 chr4 123957893 123957936 -31672184 - MTD LTR MaLR -15 385 348 1 1530 564 15 0 0 chr4 123957936 123958001 -31672119 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1530 1094 218 98 49 chr4 123958001 123958354 -31671766 - MTD LTR MaLR -53 347 3 1 1530 212 322 241 17 chr4 123958433 123958607 -31671513 - L3 LINE CR1 -179 4310 4098 1 1530 192 358 32 39 chr4 123958792 123958946 -31671174 + L3 LINE CR1 4158 4310 -179 1 1530 295 309 0 87 chr4 123959240 123959253 -31670867 + ID_B1 SINE B4 72 165 -59 1 1530 381 232 0 89 chr4 123959253 123959343 -31670777 + PB1D10 SINE Alu 3 84 -33 1 1530 396 0 0 0 chr4 123959343 123959387 -31670733 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 1 1530 592 251 137 23 chr4 123959397 123959572 -31670548 + B3A SINE B2 1 195 -3 1 1530 258 262 12 0 chr4 123959580 123959660 -31670460 - L1MB3 LINE L1 -29 6154 6074 1 1530 337 286 83 52 chr4 123959720 123959912 -31670208 - L1MB3 LINE L1 -245 5938 5741 1 1530 642 199 0 0 chr4 123960028 123960247 -31669873 + (TG)n Simple_repeat Simple_repeat 1 219 0 1 1530 361 264 133 59 chr4 123960247 123960517 -31669603 - B4 SINE B4 0 292 3 1 1530 312 279 94 38 chr4 123960529 123960689 -31669431 - L1MB3 LINE L1 -587 5596 5428 1 1530 1020 255 95 15 chr4 123960758 123961021 -31669099 - B4 SINE B4 -7 285 2 1 1530 689 282 168 32 chr4 123961042 123961537 -31668583 - L1MB3 LINE L1 -906 5240 4679 1 1530 414 247 17 157 chr4 123961692 123961922 -31668198 + B3A SINE B2 1 198 0 1 1530 1342 228 119 3 chr4 123962319 123962654 -31667466 - ORR1D1 LTR MaLR 0 374 1 1 1530 532 296 18 30 chr4 123963300 123963464 -31666656 - MTD LTR MaLR -252 167 6 1 1530 708 305 14 37 chr4 123963731 123963949 -31666171 + ID_B1 SINE B4 7 219 -5 1 1530 1551 58 0 20 chr4 123964276 123964471 -31665649 + B2_Mm1t SINE B2 1 191 -2 1 1530 702 263 105 15 chr4 123964484 123964808 -31665312 - L1MB2 LINE L1 -56 6115 5763 1 1530 1848 149 3 7 chr4 123964889 123965192 -31664928 + RLTR30 LTR ERV1 1 302 -77 1 1530 207 0 0 0 chr4 123965206 123965229 -31664891 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 1 1530 414 377 42 13 chr4 123965345 123965584 -31664536 + MamRep434 DNA TcMar 45 290 -136 1 1530 270 276 0 49 chr4 123965741 123965836 -31664284 - L2a LINE L2 0 3426 3287 1 1530 402 200 109 45 chr4 123966347 123966457 -31663663 + PB1D10 SINE Alu 1 117 0 1 1530 438 60 71 0 chr4 123966466 123966550 -31663570 + (CAGAGA)n Simple_repeat Simple_repeat 4 93 0 1 1530 4393 138 186 29 chr4 123966550 123966644 -31663476 + RLTR25B LTR ERVK 25 146 -882 1 1530 717 53 0 0 chr4 123966644 123966738 -31663382 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1530 4393 138 186 29 chr4 123966738 123967509 -31662611 + RLTR25B LTR ERVK 147 1026 -2 1 1530 931 150 0 22 chr4 123967517 123967701 -31662419 + GA-rich Low_complexity Low_complexity 1 180 0 1 1530 378 0 0 0 chr4 123967701 123967743 -31662377 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1 1530 562 182 73 36 chr4 123968261 123968398 -31661722 - B1_Mur2 SINE Alu 0 149 8 1 1530 288 0 0 0 chr4 123969917 123969949 -31660171 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1530 415 237 118 42 chr4 123969950 123970069 -31660051 - B1F SINE Alu -13 136 9 1 1530 1231 236 67 39 chr4 123970108 123970514 -31659606 + Lx9 LINE L1 7222 7638 -6 1 1530 267 300 35 130 chr4 123971114 123971344 -31658776 - RMER4A LTR ERVK -253 213 6 1 1530 514 232 68 98 chr4 123971369 123971603 -31658517 - L1MA5A LINE L1 -464 5833 5607 1 1530 408 283 0 0 chr4 123971613 123971705 -31658415 - B1_Mur1 SINE Alu -6 143 52 1 1530 547 171 24 0 chr4 123971975 123972098 -31658022 + CT-rich Low_complexity Low_complexity 5 130 0 1 1530 190 327 87 19 chr4 123972408 123972511 -31657609 - MIR SINE MIR -133 129 20 1 1530 338 268 7 104 chr4 123972943 123973097 -31657023 + L2a LINE L2 3193 3331 -95 1 1530 933 150 0 16 chr4 123973114 123973297 -31656823 + GA-rich Low_complexity Low_complexity 1 180 0 1 1530 183 42 0 0 chr4 123973302 123973326 -31656794 + (GGA)n Simple_repeat Simple_repeat 2 25 0 1 1530 233 348 17 42 chr4 123973392 123973499 -31656621 + Charlie9 DNA MER1_type 2447 2550 -207 1 1530 366 234 12 12 chr4 123973499 123973594 -31656526 + MTE2b LTR MaLR 1 95 -284 1 1530 241 379 99 59 chr4 123974063 123974436 -31655684 + MLT1K LTR MaLR 192 579 -16 1 1530 342 323 111 79 chr4 123974605 123974857 -31655263 - MIR SINE MIR -1 261 2 1 1530 236 30 30 0 chr4 123974919 123974952 -31655168 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1530 591 15 0 0 chr4 123974955 123975023 -31655097 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1530 391 288 33 33 chr4 123975039 123975161 -31654959 - RSINE1 SINE B4 -37 128 7 1 1530 728 327 4 26 chr4 123978976 123979195 -31650925 + B4 SINE B4 2 215 -77 1 1530 1141 106 0 11 chr4 123979195 123979377 -31650743 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1530 805 117 0 58 chr4 123979386 123979576 -31650544 + GA-rich Low_complexity Low_complexity 2 180 0 1 1530 225 62 31 0 chr4 123979576 123979608 -31650512 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 1 1530 1073 65 65 0 chr4 123980727 123980866 -31649254 - B1_Mus1 SINE Alu 0 148 1 1 1530 440 320 78 57 chr4 123981138 123981183 -31648937 + MLT1C LTR MaLR 67 110 -357 1 1530 593 270 108 11 chr4 123981183 123981359 -31648761 - B3A SINE B2 -5 193 1 1 1530 440 320 78 57 chr4 123981359 123981697 -31648423 + MLT1C LTR MaLR 111 458 -9 1 1530 234 0 0 0 chr4 123982134 123982160 -31647960 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1530 1713 181 106 42 chr4 123982235 123982592 -31647528 + RLTR14 LTR ERV1 3 382 0 1 1530 303 286 102 96 chr4 123982619 123982932 -31647188 + ORR1E LTR MaLR 38 352 -22 1 1530 269 254 119 6 chr4 123983808 123983935 -31646185 + L1M3 LINE L1 5333 5468 -710 1 1530 297 0 0 0 chr4 123984657 123984690 -31645430 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1530 245 260 44 37 chr4 123984888 123984905 -31645215 - L1M2 LINE L1 -691 5489 5475 1 1530 182 37 0 36 chr4 123984905 123984933 -31645187 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1530 251 244 39 58 chr4 123984933 123985078 -31645042 - L1M2 LINE L1 -706 5474 5328 1 1530 530 306 41 46 chr4 123985731 123985950 -31644170 + MER20 DNA MER1_type 2 219 0 1 1530 184 287 168 56 chr4 123986061 123986168 -31643952 + MIRc SINE MIR 83 201 -67 1 1530 282 301 0 21 chr4 123986704 123986799 -31643321 + GA-rich Low_complexity Low_complexity 4 96 0 1 1530 870 296 14 48 chr4 123986895 123987186 -31642934 + B4 SINE B4 1 281 -11 1 1530 198 363 39 10 chr4 123988553 123988656 -31641464 - L2c LINE L2 -65 3322 3217 1 1530 266 200 18 18 chr4 123988747 123988803 -31641317 + RMER30 DNA MER1_type 8 63 -139 1 1530 262 275 211 96 chr4 123988803 123989064 -31641056 + B4 SINE B4 2 292 0 1 1530 628 273 118 22 chr4 123989260 123989482 -31640638 + L1MEc LINE L1 1521 1830 -4572 1 1530 333 0 0 0 chr4 123989482 123989519 -31640601 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1530 628 305 154 39 chr4 123989519 123990095 -31640025 + L1MEc LINE L1 1831 2492 -3829 1 1530 1106 189 34 14 chr4 123990095 123990304 -31639816 - B3 SINE B2 -3 213 1 1 1530 2131 134 74 8 chr4 123990307 123990660 -31639460 - ORR1C1 LTR MaLR -1 377 2 1 1530 282 294 122 89 chr4 123990660 123990833 -31639287 + L1MEc LINE L1 2493 2666 -3655 1 1530 455 282 164 20 chr4 123990836 123990988 -31639132 + B4A SINE B4 24 197 -95 1 1530 265 106 43 0 chr4 123990984 123991031 -31639089 - B4A SINE B4 -58 234 186 1 1530 320 283 142 62 chr4 123991116 123991668 -31638452 + L1M5 LINE L1 2477 3082 -3064 1 1530 851 176 7 33 chr4 123991668 123991821 -31638299 + B1_Mur3 SINE Alu 1 149 0 1 1530 320 283 142 62 chr4 123991821 123992021 -31638099 + L1M5 LINE L1 3083 3289 -2857 1 1530 849 256 28 19 chr4 123992186 123992397 -31637723 + B3 SINE B2 4 216 0 1 1530 657 289 20 51 chr4 123992594 123992618 -31637502 - B3 SINE B2 -23 193 172 1 1530 279 0 0 0 chr4 123992618 123992649 -31637471 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1530 435 38 0 0 chr4 123992649 123992701 -31637419 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1530 657 289 20 51 chr4 123992701 123992872 -31637248 - B3 SINE B2 -45 171 4 1 1530 26 0 0 0 chr4 123993038 123993064 -31637056 + AT_rich Low_complexity Low_complexity 1 26 0 1 1530 999 75 198 6 chr4 123993176 123993338 -31636782 - B2_Mm2 SINE B2 -2 193 1 1 1530 719 193 32 104 chr4 123993340 123993820 -31636300 - RMER17C LTR ERVK -13 397 2 1 191 181 263 0 0 chr4 123994089 123994127 -31635993 + L2b LINE L2 3090 3127 -248 1 1531 301 341 29 23 chr4 123995540 123995711 -31634409 - L1M4b LINE L1 -5397 1937 1766 1 1531 252 248 21 28 chr4 123995722 123995863 -31634257 + CT-rich Low_complexity Low_complexity 3 142 0 1 1531 610 261 118 55 chr4 123996365 123996620 -31633500 + B4 SINE B4 2 272 -20 1 1531 253 211 0 0 chr4 123996663 123996715 -31633405 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1531 284 263 40 0 chr4 123996846 123996922 -31633198 + MIRb SINE MIR 109 187 -81 1 1531 322 207 0 33 chr4 123997279 123997339 -31632781 - RSINE1 SINE B4 -107 58 1 1 1531 1336 139 42 0 chr4 123997616 123997832 -31632288 + URR1B DNA MER1_type 1 225 0 1 1531 312 299 85 81 chr4 123998211 123998447 -31631673 + L2 LINE L2 1879 2115 -1304 1 1531 966 253 145 25 chr4 123998558 123998834 -31631286 - MTE2b LTR MaLR -65 314 6 1 1531 2311 133 81 28 chr4 123998990 123999385 -31630735 - MTC LTR MaLR -1 420 5 1 1531 315 362 74 20 chr4 123999524 123999930 -31630190 - L1MC4 LINE L1 -422 7620 7193 1 1531 21 0 0 0 chr4 123999944 123999965 -31630155 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 710 246 0 0 chr4 124000016 124000158 -31629962 - B3A SINE B2 -56 142 1 1 1531 343 307 79 0 chr4 124000388 124000502 -31629618 + MER89 LTR ERV1 1 123 -436 2 1531 820 167 29 7 chr4 124000532 124000671 -31629449 + B1_Mur4 SINE Alu 1 142 -8 3 1531 789 110 0 0 chr4 124000672 124000790 -31629330 + (GGA)n Simple_repeat Simple_repeat 2 119 0 4 1531 360 260 120 55 chr4 124000834 124001017 -31629103 + MER89 LTR ERV1 255 449 -110 2 1531 258 337 35 46 chr4 124001117 124001291 -31628829 - L1MD3 LINE L1 -1115 6880 6709 5 1531 481 211 67 9 chr4 124001316 124001421 -31628699 + B1F2 SINE Alu 37 147 -2 6 1531 278 294 114 29 chr4 124001626 124001731 -31628389 - B1F1 SINE Alu -22 127 14 7 1531 657 228 89 0 chr4 124001649 124001807 -31628313 - ID_B1 SINE B4 -39 185 14 8 1531 778 217 106 0 chr4 124002535 124002733 -31627387 - B4 SINE B4 -73 219 1 9 1531 381 277 32 0 chr4 124002741 124002835 -31627285 - B1F SINE Alu -12 137 41 1 1531 1688 206 59 64 chr4 124003171 124003592 -31626528 + MTD LTR MaLR 1 419 0 1 1531 597 272 97 11 chr4 124003660 124003846 -31626274 - MamGypLTR2c LTR Gypsy -779 289 88 1 1531 666 262 13 20 chr4 124003860 124004012 -31626108 + RSINE1 SINE B4 3 153 -12 1 1531 258 136 0 0 chr4 124004025 124004069 -31626051 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 1 1531 419 304 6 42 chr4 124004147 124004315 -31625805 + RSINE1 SINE B4 4 165 0 1 1531 21 0 0 0 chr4 124004367 124004388 -31625732 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 574 335 27 0 chr4 124004606 124004791 -31625329 + ORR1E LTR MaLR 1 190 -169 1 1531 660 119 0 0 chr4 124004793 124004902 -31625218 + (TCTCCC)n Simple_repeat Simple_repeat 5 113 0 1 1531 707 298 75 33 chr4 124005025 124005414 -31624706 + L1MC3 LINE L1 6987 7391 -394 1 1531 1224 215 70 35 chr4 124005437 124005750 -31624370 - MTE2b LTR MaLR -50 329 6 2 1531 895 219 160 19 chr4 124005751 124006058 -31624062 + L1MC3 LINE L1 7436 7785 0 1 1531 230 217 14 42 chr4 124006054 124006126 -31623994 + L1ME3 LINE L1 6092 6161 -1 2 1531 792 303 78 54 chr4 124006218 124006588 -31623532 + MLT1B LTR MaLR 11 389 -1 2 1531 922 288 14 51 chr4 124006786 124007082 -31623038 - B4A SINE B4 -2 290 6 2 1531 1352 284 131 24 chr4 124007082 124007948 -31622172 - L1MC3 LINE L1 -979 6806 5849 2 1531 432 234 56 0 chr4 124007948 124008055 -31622065 + PB1D9 SINE Alu 1 113 -7 2 1531 455 264 41 8 chr4 124008093 124008215 -31621905 + RSINE1 SINE B4 37 162 -3 2 1531 564 299 54 0 chr4 124008250 124008397 -31621723 + RSINE1 SINE B4 3 157 -8 2 1531 468 260 60 43 chr4 124008488 124008673 -31621447 - L1MC3 LINE L1 -1926 5859 5672 2 1531 331 273 42 118 chr4 124008745 124008957 -31621163 - L1MC3 LINE L1 -2258 5527 5332 2 1531 576 212 16 33 chr4 124008958 124009080 -31621040 + RSINE1 SINE B4 1 120 -45 2 1531 640 190 155 53 chr4 124009132 124009338 -31620782 - L1MC3 LINE L1 -873 5273 5047 2 1531 291 272 174 78 chr4 124009401 124009620 -31620500 + MLT1B LTR MaLR 22 261 -129 2 1531 1065 274 30 30 chr4 124009679 124010007 -31620113 - MTEb LTR MaLR -23 356 29 3 1531 705 216 73 54 chr4 124010175 124010380 -31619740 + MLT2B3 LTR ERVL 1 209 -345 3 1531 856 222 2 17 chr4 124010407 124010564 -31619556 + B3A SINE B2 10 167 -49 3 1531 654 13 0 0 chr4 124010564 124010639 -31619481 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1531 746 234 4 189 chr4 124010639 124010708 -31619412 + B3 SINE B2 134 194 -1 3 1531 274 336 81 62 chr4 124010780 124011053 -31619067 + MLT2B3 LTR ERVL 275 552 -2 3 1531 817 306 55 55 chr4 124011062 124011515 -31618605 - L1ME2 LINE L1 -173 5991 5539 3 1531 319 260 0 0 chr4 124011760 124011833 -31618287 - L1M2 LINE L1 -3847 2998 2926 3 1531 340 243 76 25 chr4 124012120 124012287 -31617833 - L1M2 LINE L1 -3912 2930 2758 3 1531 673 290 27 23 chr4 124012562 124012820 -31617300 - L1M2 LINE L1 -4172 2677 2419 3 1531 396 278 0 20 chr4 124012820 124012919 -31617201 - U6 snRNA snRNA 0 107 11 3 1531 335 318 89 81 chr4 124012944 124013056 -31617064 - L1MEg LINE L1 -4634 1450 1339 3 1531 712 250 65 5 chr4 124013056 124013257 -31616863 - B3 SINE B2 -3 213 1 3 1531 335 318 89 81 chr4 124013257 124013514 -31616606 - L1MEg LINE L1 -4746 1338 1078 3 1531 783 288 107 19 chr4 124013518 124013714 -31616406 + B4A SINE B4 8 220 -72 3 1531 1002 146 0 0 chr4 124013714 124013885 -31616235 + (ATG)n Simple_repeat Simple_repeat 1 171 0 4 1531 783 288 107 19 chr4 124013885 124013950 -31616170 + B4A SINE B4 221 291 -1 3 1531 1080 97 118 24 chr4 124013992 124014161 -31615959 - B2_Mm2 SINE B2 -9 186 2 4 1531 219 69 0 0 chr4 124014250 124014279 -31615841 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1531 267 292 130 73 chr4 124014394 124014468 -31615652 - MLT1A0 LTR MaLR -162 203 136 4 1531 3085 57 34 3 chr4 124014468 124014856 -31615264 - MTB LTR MaLR 0 400 1 4 1531 267 292 130 73 chr4 124014856 124014973 -31615147 - MLT1A0 LTR MaLR -230 135 1 4 1531 355 302 57 85 chr4 124015031 124015348 -31614772 - B4A SINE B4 -15 277 1 4 1531 895 246 15 0 chr4 124015566 124015769 -31614351 - B3 SINE B2 -9 207 2 4 1531 231 36 0 0 chr4 124017307 124017335 -31612785 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 1531 242 196 0 0 chr4 124017892 124017943 -31612177 + C-rich Low_complexity Low_complexity 1 51 0 4 1531 540 129 0 0 chr4 124018407 124018508 -31611612 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1531 469 268 165 0 chr4 124018511 124018638 -31611482 - RSINE1 SINE B4 -14 151 4 5 1531 1206 49 0 0 chr4 124018827 124018966 -31611154 + B1_Mus1 SINE Alu 2 140 -8 5 1531 243 0 0 0 chr4 124018966 124018993 -31611127 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1531 267 103 0 0 chr4 124019072 124019111 -31611009 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1531 289 56 0 0 chr4 124019144 124019180 -31610940 - U2 snRNA snRNA -152 36 1 5 1531 1440 149 0 9 chr4 124019258 124019474 -31610646 - B3 SINE B2 -2 214 1 5 1531 255 130 0 0 chr4 124019476 124019530 -31610590 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1531 278 281 123 0 chr4 124019542 124019656 -31610464 - L1MEd LINE L1 -5062 1057 930 5 1531 267 319 143 27 chr4 124019853 124020111 -31610009 - L1ME2 LINE L1 -230 5934 5647 5 1531 297 68 0 0 chr4 124020243 124020287 -31609833 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1531 658 286 149 25 chr4 124020287 124020649 -31609471 - L1MC LINE L1 -2873 3273 2867 6 1531 463 189 44 62 chr4 124020658 124020771 -31609349 - ORR1C2 LTR MaLR 0 384 274 6 1531 308 313 40 13 chr4 124020771 124020923 -31609197 - L1MC LINE L1 -3286 2860 2705 6 1531 1580 164 114 18 chr4 124021105 124021446 -31608674 + ORR1D1 LTR MaLR 1 374 0 6 1531 844 259 19 23 chr4 124021584 124021841 -31608279 - L1M2 LINE L1 -1194 4949 4694 6 1531 186 71 0 0 chr4 124022154 124022182 -31607938 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 6 1531 379 197 19 24 chr4 124022465 124022589 -31607531 + URR1B DNA MER1_type 1 225 0 6 1531 3113 9 18 0 chr4 124022660 124023000 -31607120 - ORR1A0 LTR MaLR 0 346 1 6 1531 546 220 81 86 chr4 124023043 124023217 -31606903 - B4 SINE B4 -112 180 8 6 1531 246 305 171 0 chr4 124024340 124024445 -31605675 - L2b LINE L2 -24 3351 3229 6 1531 376 296 102 0 chr4 124024587 124024695 -31605425 - B4A SINE B4 -4 288 170 6 1531 203 278 167 49 chr4 124025255 124025357 -31604763 + MIR SINE MIR 31 144 -124 7 1531 315 0 0 0 chr4 124025399 124025434 -31604686 + (CCA)n Simple_repeat Simple_repeat 1 35 0 7 1531 837 290 60 53 chr4 124026146 124026412 -31603708 - B4A SINE B4 0 292 25 7 1531 186 286 117 70 chr4 124028478 124028606 -31601514 + MIRc SINE MIR 20 153 -115 7 1531 180 329 13 38 chr4 124029350 124029429 -31600691 + L2a LINE L2 3348 3424 -2 7 1531 354 313 7 20 chr4 124029431 124029581 -31600539 + (TGGA)n Simple_repeat Simple_repeat 2 149 0 7 1531 232 250 125 39 chr4 124029766 124029870 -31600250 + L2 LINE L2 2524 2636 -783 7 1531 1887 106 31 22 chr4 124030302 124030621 -31599499 - RLTRETN_Mm LTR ERVK 0 322 1 7 1531 25297 34 8 9 chr4 124030621 124035537 -31594583 - MMETn-int LTR ERVK 0 4844 1 7 1531 1887 106 31 22 chr4 124035537 124035856 -31594264 - RLTRETN_Mm LTR ERVK 0 322 1 7 1531 861 185 19 12 chr4 124036018 124036277 -31593843 + GA-rich Low_complexity Low_complexity 1 261 0 7 1531 189 171 0 0 chr4 124036846 124036881 -31593239 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1531 32 81 0 0 chr4 124036881 124036955 -31593165 + AT_rich Low_complexity Low_complexity 1 74 0 8 1531 303 281 42 34 chr4 124036967 124037085 -31593035 - B1_Mm SINE Alu 0 147 29 8 1531 410 288 8 31 chr4 124036980 124037109 -31593011 - ID_B1 SINE B4 -13 211 86 8 1531 431 283 61 21 chr4 124037920 124038078 -31592042 + MIRb SINE MIR 4 162 -46 8 1531 333 294 8 84 chr4 124038219 124038338 -31591782 + PB1D7 SINE Alu 5 114 -6 8 1531 324 143 0 0 chr4 124038353 124038402 -31591718 + RMER10B LTR ERVL 350 398 0 8 1531 555 320 10 57 chr4 124038568 124038760 -31591360 - ORR1D2 LTR MaLR -149 221 39 8 1531 311 353 79 49 chr4 124038866 124039271 -31590849 + L1ME2 LINE L1 2588 3004 -3142 8 1531 1178 171 5 41 chr4 124039301 124039521 -31590599 + B3 SINE B2 5 216 0 8 1531 420 282 96 50 chr4 124039528 124039748 -31590372 + L1ME2 LINE L1 3047 3276 -2870 8 1531 285 297 0 32 chr4 124039752 124039846 -31590274 + GA-rich Low_complexity Low_complexity 2 92 0 8 1531 879 314 41 84 chr4 124039925 124040505 -31589615 + L1ME2 LINE L1 3392 3946 -2200 8 1531 536 266 86 29 chr4 124040687 124040861 -31589259 + B3A SINE B2 15 198 0 9 1531 337 279 132 50 chr4 124040872 124041189 -31588931 + L1ME2 LINE L1 4258 4600 -1546 8 1531 903 221 27 16 chr4 124041230 124041414 -31588706 - B3A SINE B2 -11 187 2 9 1531 243 287 144 59 chr4 124041452 124041527 -31588593 + L1ME2 LINE L1 4628 4709 -1437 8 1531 384 22 0 0 chr4 124041527 124041572 -31588548 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1531 243 287 144 59 chr4 124041572 124041766 -31588354 + L1ME2 LINE L1 4710 4920 -1226 8 1531 435 19 0 0 chr4 124041807 124041859 -31588261 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1531 575 315 174 22 chr4 124042143 124042649 -31587471 + L1ME2 LINE L1 5285 5867 -297 8 1531 906 143 0 7 chr4 124042655 124042803 -31587317 - URR1A DNA MER1_type 0 226 80 9 1531 357 321 0 0 chr4 124042987 124043096 -31587024 + L1ME2 LINE L1 6056 6164 0 8 1531 651 217 20 20 chr4 124043113 124043249 -31586871 + B1F SINE Alu 2 137 -12 9 1531 258 32 0 0 chr4 124043249 124043280 -31586840 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 9 1531 463 256 30 37 chr4 124043347 124043481 -31586639 - ID_B1 SINE B4 -85 139 7 9 1531 2247 70 94 0 chr4 124043708 124044007 -31586113 - ORR1A2 LTR MaLR 0 327 1 9 1531 593 104 36 36 chr4 124044086 124044342 -31585778 + (CA)n Simple_repeat Simple_repeat 1 256 0 9 1531 357 158 0 17 chr4 124044355 124044413 -31585707 + HAL1-3A_ME LINE L1 1974 2030 -828 1 1531 916 108 145 13 chr4 124044750 124044909 -31585211 - URR1A DNA MER1_type -43 183 4 1 1531 240 283 84 50 chr4 124044986 124045105 -31585015 + MER5A DNA MER1_type 63 185 -4 1 1531 441 122 0 0 chr4 124045940 124046014 -31584106 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 1 1531 238 106 40 60 chr4 124046250 124046300 -31583820 + MIR SINE MIR 97 145 -63 1 1531 333 250 14 0 chr4 124046327 124046399 -31583721 - MER58B DNA MER1_type -16 325 253 1 1531 352 227 13 26 chr4 124046485 124046562 -31583558 + B4A SINE B4 2 77 -215 1 1531 340 289 33 11 chr4 124046565 124046656 -31583464 + Lx8 LINE L1 7169 7261 -212 1 1531 262 309 56 9 chr4 124046680 124046788 -31583332 + B4A SINE B4 129 241 -51 1 1531 703 304 149 71 chr4 124046822 124047485 -31582635 + RMER13A LTR ERVK 30 744 -116 1 1531 558 98 0 0 chr4 124047539 124047621 -31582499 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1531 229 309 0 0 chr4 124047733 124047801 -31582319 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1531 243 286 101 37 chr4 124047841 124047950 -31582170 + MLT1D LTR MaLR 73 188 -317 1 1531 832 283 47 0 chr4 124047950 124048162 -31581958 + Lx8 LINE L1 6655 6876 -597 1 1531 1173 237 183 30 chr4 124048169 124048438 -31581682 + Lx8 LINE L1 6991 7261 -212 1 1531 558 0 0 0 chr4 124048438 124048500 -31581620 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1531 1173 237 183 30 chr4 124048500 124048634 -31581486 + Lx8 LINE L1 7262 7455 -18 1 1531 250 272 36 44 chr4 124048789 124048887 -31581233 + MLT1D LTR MaLR 409 488 -17 1 1531 243 125 0 0 chr4 124049439 124049479 -31580641 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1531 214 220 0 74 chr4 124049480 124049534 -31580586 - MIRc SINE MIR -210 58 9 1 1531 338 292 27 14 chr4 124049864 124050010 -31580110 + L1M4 LINE L1 4706 4853 -1293 1 1531 766 294 6 6 chr4 124050010 124050181 -31579939 + B3A SINE B2 1 171 -27 1 1531 459 0 0 0 chr4 124050188 124050239 -31579881 + (TTAAA)n Simple_repeat Simple_repeat 3 53 0 1 1531 233 243 0 67 chr4 124050247 124050322 -31579798 + L1MD LINE L1 4840 4909 -1237 1 1531 345 47 0 0 chr4 124050523 124050566 -31579554 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1531 195 42 0 0 chr4 124050568 124050592 -31579528 + (CCA)n Simple_repeat Simple_repeat 1 24 0 1 1531 1290 142 69 23 chr4 124053587 124053803 -31576317 - URR1A DNA MER1_type 0 226 1 1 1531 441 54 0 0 chr4 124054811 124054867 -31575253 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1 1531 289 295 89 16 chr4 124054885 124055009 -31575111 + MLT1D LTR MaLR 373 505 0 1 1531 1036 260 18 0 chr4 124055409 124055630 -31574490 + B4A SINE B4 5 229 -63 1 1531 397 244 85 78 chr4 124055630 124055759 -31574361 + B1_Mur4 SINE Alu 1 130 -20 1 1531 564 15 0 0 chr4 124055761 124055826 -31574294 + (TAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1531 276 280 92 82 chr4 124055826 124055899 -31574221 + B4 SINE B4 224 291 -1 1 1531 318 132 0 19 chr4 124055929 124055983 -31574137 + HAL1-3A_ME LINE L1 1976 2028 -830 1 1531 336 130 0 0 chr4 124055989 124056058 -31574062 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1531 300 137 20 0 chr4 124056059 124056110 -31574010 + HAL1-3A_ME LINE L1 1976 2027 -831 1 1531 849 148 3 0 chr4 124056113 124056481 -31573639 + (CA)n Simple_repeat Simple_repeat 1 368 0 1 1531 322 104 0 20 chr4 124056496 124056545 -31573575 + HAL1-3A_ME LINE L1 1976 2023 -835 1 1531 579 289 123 60 chr4 124056771 124057103 -31573017 + MLT2D LTR ERVL 2 354 -60 1 1531 539 266 59 50 chr4 124057116 124057318 -31572802 + B4A SINE B4 33 236 -56 1 1531 354 230 0 39 chr4 124057430 124057507 -31572613 + B4A SINE B4 217 290 -2 1 1531 184 127 45 45 chr4 124057527 124057593 -31572527 + CT-rich Low_complexity Low_complexity 3 68 0 1 1531 278 165 0 56 chr4 124057620 124057700 -31572420 + MLT2D LTR ERVL 490 559 -3 1 1531 295 353 70 90 chr4 124058453 124058475 -31571645 - ORR1E LTR MaLR 0 359 340 1 1531 644 0 0 13 chr4 124058475 124058552 -31571568 + (TTTTG)n Simple_repeat Simple_repeat 4 79 0 1 1531 295 353 70 90 chr4 124058552 124058828 -31571292 - ORR1E LTR MaLR -20 339 67 1 1531 226 280 95 21 chr4 124058872 124058967 -31571153 - ORR1E LTR MaLR -257 102 1 1 1531 750 232 27 53 chr4 124059436 124059612 -31570508 + B3A SINE B2 1 173 -25 1 1531 396 59 0 0 chr4 124059612 124059663 -31570457 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1531 351 280 160 40 chr4 124060137 124060312 -31569808 + MIRb SINE MIR 45 240 -28 1 1531 630 253 26 32 chr4 124060656 124060811 -31569309 + RMER15 LTR ERVL 300 453 -122 1 1531 251 281 10 68 chr4 124060909 124061012 -31569108 + RMER15 LTR ERVL 464 560 -15 1 1531 544 208 0 77 chr4 124062095 124062251 -31567869 - B1_Mur2 SINE Alu -1 148 5 1 1531 542 75 12 0 chr4 124063382 124063462 -31566658 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1531 2295 153 44 8 chr4 124063928 124064317 -31565803 + MTC LTR MaLR 19 421 0 1 1531 452 94 0 0 chr4 124064414 124064478 -31565642 + ORR1A4 LTR MaLR 1 64 -265 1 1531 228 283 0 0 chr4 124064992 124065038 -31565082 - ORR1E LTR MaLR -313 46 1 1 1531 252 0 0 0 chr4 124065205 124065233 -31564887 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1531 286 275 220 0 chr4 124065362 124065453 -31564667 + PB1D10 SINE Alu 7 117 0 1 1531 625 232 171 43 chr4 124065663 124065920 -31564200 + B4A SINE B4 1 290 -2 1 1531 192 97 0 0 chr4 124065949 124065980 -31564140 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1531 181 320 44 66 chr4 124066500 124066637 -31563483 + L2 LINE L2 2889 3022 -397 1 1531 328 252 10 10 chr4 124067705 124067809 -31562311 - L1MC LINE L1 -2072 5810 5707 1 1531 311 263 10 31 chr4 124067810 124067908 -31562212 + L2a LINE L2 1705 1800 -1619 1 1531 362 313 33 39 chr4 124068023 124068176 -31561944 - RSINE1 SINE B4 -2 163 12 1 1531 317 336 33 0 chr4 124068237 124068359 -31561761 + L2a LINE L2 1926 2051 -1368 1 1531 270 106 0 0 chr4 124068437 124068484 -31561636 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1531 265 377 135 4 chr4 124068600 124068874 -31561246 + L2a LINE L2 2141 2450 -969 1 1531 1085 243 213 24 chr4 124068889 124069218 -31560902 + MTD LTR MaLR 5 395 -24 1 1531 378 296 241 39 chr4 124069260 124069700 -31560420 + L2a LINE L2 2517 3045 -374 1 1531 515 251 156 66 chr4 124069820 124070063 -31560057 - MLT1A0 LTR MaLR -63 302 38 1 1531 266 325 31 47 chr4 124070112 124070241 -31559879 + L2a LINE L2 3207 3333 -93 1 1531 427 244 0 0 chr4 124070249 124070335 -31559785 + 5S rRNA rRNA 3 88 -33 1 1531 247 342 89 30 chr4 124070853 124071186 -31558934 - L2a LINE L2 -87 3339 2955 1 1531 224 149 0 21 chr4 124071310 124071358 -31558762 + GA-rich Low_complexity Low_complexity 1 47 0 1 1531 331 328 59 62 chr4 124071771 124072033 -31558087 - MER102a DNA MER1_type -61 270 4 1 1531 188 304 0 21 chr4 124074345 124074439 -31555681 - L2a LINE L2 -1424 1995 1904 1 1531 249 109 0 0 chr4 124075315 124075361 -31554759 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1531 21 36 0 0 chr4 124076032 124076060 -31554060 + AT_rich Low_complexity Low_complexity 1 28 0 1 1531 511 238 12 75 chr4 124076264 124076437 -31553683 + RSINE1 SINE B4 4 165 0 1 1531 1210 133 16 5 chr4 124076686 124076875 -31553245 + URR1A DNA MER1_type 36 226 0 1 1531 336 351 64 19 chr4 124076888 124077045 -31553075 - MER63D DNA AcHobo -869 192 29 1 1531 258 122 0 24 chr4 124077089 124077131 -31552989 - MIR SINE MIR -132 76 36 1 1531 196 312 133 40 chr4 124077747 124077897 -31552223 + MIR3 SINE MIR 33 196 -12 1 1531 199 246 93 80 chr4 124080354 124080429 -31549691 - MIR SINE MIR -57 151 76 1 1531 1269 251 76 10 chr4 124080929 124081243 -31548877 + MLT1B LTR MaLR 42 376 -14 1 1531 445 306 108 106 chr4 124081613 124082146 -31547974 - MLT1H2 LTR MaLR 0 549 1 1 1531 952 281 60 60 chr4 124082233 124082585 -31547535 + ORR1E LTR MaLR 4 355 -4 1 1531 682 286 6 0 chr4 124083106 124083284 -31546836 - B3A SINE B2 -16 182 4 1 1531 267 232 116 0 chr4 124083284 124083353 -31546767 + B1_Mur1 SINE Alu 68 144 -5 1 1531 254 323 134 59 chr4 124083674 124084098 -31546022 + L2c LINE L2 2932 3387 0 1 1531 924 248 112 0 chr4 124084808 124085058 -31545062 + B4A SINE B4 2 279 -13 1 1531 321 314 28 28 chr4 124085207 124085387 -31544733 + L1MEe LINE L1 1405 1606 -901 1 1531 1125 311 118 30 chr4 124085599 124085990 -31544130 + L1MC3 LINE L1 133 566 -5559 1 1531 213 65 0 0 chr4 124085990 124086021 -31544099 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1531 1125 311 118 30 chr4 124086021 124086454 -31543666 + L1MC3 LINE L1 567 1028 -5097 1 1531 1275 239 120 9 chr4 124086624 124086957 -31543163 - ORR1D2 LTR MaLR 0 370 1 1 1531 250 295 12 82 chr4 124086967 124087137 -31542983 + L1MC3 LINE L1 1336 1493 -5338 1 1531 636 194 79 61 chr4 124087184 124087398 -31542722 - Lx9 LINE L1 -7 7637 7420 1 1531 430 304 80 47 chr4 124087389 124087825 -31542295 + L1MC3 LINE L1 1515 1996 -4835 1 1531 290 214 18 0 chr4 124087832 124087888 -31542232 + ID SINE ID 12 68 -156 1 1531 667 196 13 0 chr4 124087899 124088057 -31542063 + GA-rich Low_complexity Low_complexity 3 162 0 1 1531 491 215 104 0 chr4 124088250 124088394 -31541726 + L1MC3 LINE L1 2386 2544 -4287 1 1531 2057 244 158 23 chr4 124088379 124089178 -31540942 + L1MC3 LINE L1 2922 3834 -2810 1 1531 5547 66 3 10 chr4 124089178 124089911 -31540209 + L1_Mus1 LINE L1 5861 6567 0 1 1531 2057 244 158 23 chr4 124089911 124090076 -31540044 + L1MC3 LINE L1 3835 4017 -2627 1 1531 461 250 142 130 chr4 124090136 124090757 -31539363 + L1MC3 LINE L1 4412 5039 -1605 1 1531 243 100 0 0 chr4 124090763 124090803 -31539317 + B2_Mm2 SINE B2 2 41 -154 1 1531 1347 176 58 4 chr4 124090901 124091158 -31538962 + MurSatRep1 Unknown Unknown 2 272 -1865 1 1531 966 62 153 0 chr4 124091164 124091292 -31538828 + B2_Mm2 SINE B2 27 162 -33 1 1531 204 40 0 0 chr4 124091292 124091317 -31538803 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1531 966 62 153 0 chr4 124091317 124091332 -31538788 + B2_Mm2 SINE B2 163 191 -4 1 1531 366 241 200 24 chr4 124091332 124091502 -31538618 + L1MC3 LINE L1 6182 6381 -1902 1 1531 311 333 83 79 chr4 124091705 124091946 -31538174 + ORR1E LTR MaLR 77 318 -41 1 1531 1202 283 49 8 chr4 124092175 124092563 -31537557 + L1MC3 LINE L1 6684 7087 -1196 1 1531 543 269 181 5 chr4 124092592 124092899 -31537221 + MLT2B4 LTR ERVL 5 486 -70 1 1531 249 246 25 0 chr4 124092954 124093072 -31537048 + GA-rich Low_complexity Low_complexity 2 122 0 1 1531 1399 264 190 14 chr4 124093135 124093704 -31536416 + L1MC3 LINE L1 7157 7825 -458 1 1531 582 225 16 0 chr4 124093709 124093838 -31536282 + B1F2 SINE Alu 3 133 -16 1 1531 448 122 12 12 chr4 124093860 124093943 -31536177 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 1 1531 970 133 179 16 chr4 124094086 124094270 -31535850 + B3 SINE B2 3 216 0 1 1531 386 265 112 32 chr4 124094312 124094499 -31535621 + L1MC3 LINE L1 7958 8159 -124 1 1531 370 264 39 0 chr4 124094683 124094782 -31535338 + PB1D7 SINE Alu 32 149 0 1 1531 221 309 0 0 chr4 124094787 124094842 -31535278 + GA-rich Low_complexity Low_complexity 3 57 0 1 1531 304 207 0 57 chr4 124094853 124094947 -31535173 + B1_Mus1 SINE Alu 32 120 0 1 1531 189 139 0 0 chr4 124094969 124095012 -31535108 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1531 336 48 0 0 chr4 124095098 124095140 -31534980 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1531 821 134 67 0 chr4 124095140 124095274 -31534846 - B1_Mur4 SINE Alu -7 143 1 1 1531 462 308 55 46 chr4 124095814 124096052 -31534068 + LTR16D LTR ERVL 240 479 -172 2 1531 25 0 0 0 chr4 124096299 124096324 -31533796 + AT_rich Low_complexity Low_complexity 1 25 0 2 1531 398 310 103 58 chr4 124096980 124097494 -31532626 + L1M2 LINE L1 1827 2376 -4473 2 1531 270 0 0 0 chr4 124097494 124097524 -31532596 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1531 398 299 87 55 chr4 124097524 124098056 -31532064 + L1M2 LINE L1 2377 2916 -3929 2 1531 875 169 0 26 chr4 124098104 124098256 -31531864 + B1_Mus1 SINE Alu 1 148 0 2 1531 460 341 49 0 chr4 124098297 124098461 -31531659 + B3A SINE B2 26 197 -1 2 1531 469 241 73 9 chr4 124098579 124098688 -31531432 - PB1D9 SINE Alu -3 117 2 2 1531 266 299 48 17 chr4 124098689 124098868 -31531252 + L1_Mur3 LINE L1 2274 2465 -3382 2 1531 216 158 0 0 chr4 124098917 124098955 -31531165 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 2 1531 320 340 222 5 chr4 124099026 124099215 -31530905 + L1M4 LINE L1 4881 5110 -1036 2 1531 210 71 0 0 chr4 124099216 124099244 -31530876 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1531 338 312 29 0 chr4 124099308 124099446 -31530674 + L1M4 LINE L1 5559 5700 -540 2 1531 312 48 0 0 chr4 124099544 124099586 -31530534 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1531 684 205 16 8 chr4 124099778 124099906 -31530214 + B3A SINE B2 3 131 -67 2 1531 324 0 0 0 chr4 124100560 124100596 -31529524 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1531 568 200 0 9 chr4 124100716 124100822 -31529298 + B1_Mur1 SINE Alu 44 148 -1 2 1531 886 159 18 18 chr4 124100825 124100991 -31529129 + B2_Mm2 SINE B2 1 166 -29 2 1531 713 80 0 0 chr4 124100991 124101079 -31529041 + L1Md_F2 LINE L1 5498 5585 -298 2 1531 8401 35 5 1 chr4 124101080 124102070 -31528050 + L1Md_F2 LINE L1 5587 6580 -2 2 1531 696 161 15 0 chr4 124102078 124102208 -31527912 + BC1_Mm scRNA scRNA 3 134 -18 2 1531 405 0 0 0 chr4 124102208 124102253 -31527867 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 2 1531 370 236 0 0 chr4 124102265 124102337 -31527783 + ID4 SINE ID 3 74 -9 2 1531 237 256 41 82 chr4 124102371 124102469 -31527651 + L1M5 LINE L1 5379 5472 -652 2 1531 251 307 69 55 chr4 124103036 124103181 -31526939 + L1M5 LINE L1 3854 4000 -2146 2 1531 264 30 0 0 chr4 124103302 124103335 -31526785 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1531 241 214 19 28 chr4 124103341 124103447 -31526673 + GA-rich Low_complexity Low_complexity 4 108 0 2 1531 571 255 319 19 chr4 124103447 124103654 -31526466 - B4A SINE B4 -22 270 2 2 1531 188 184 0 20 chr4 124103763 124103813 -31526307 + GA-rich Low_complexity Low_complexity 3 51 0 2 1531 1023 46 53 8 chr4 124104498 124104630 -31525490 - B1_Mus1 SINE Alu -10 138 1 2 1531 314 62 42 0 chr4 124104630 124104678 -31525442 + (TTTTC)n Simple_repeat Simple_repeat 4 53 0 2 1531 298 351 24 12 chr4 124104821 124104991 -31525129 - MIRb SINE MIR -78 190 19 2 1531 699 289 93 46 chr4 124105050 124105373 -31524747 - L1ME4a LINE L1 -223 5901 5564 2 1531 393 102 0 0 chr4 124105564 124105623 -31524497 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1531 570 265 55 64 chr4 124105777 124105995 -31524125 + ID_B1 SINE B4 8 223 -1 2 1531 186 311 98 0 chr4 124106425 124106486 -31523634 - L2b LINE L2 -1 3374 3308 2 1531 363 348 91 14 chr4 124106594 124106804 -31523316 + LTR16E2 LTR ERVL 48 273 -295 2 1531 304 186 69 0 chr4 124106855 124106943 -31523177 + LTR16E2 LTR ERVL 395 504 -64 2 1531 993 47 0 8 chr4 124107119 124107242 -31522878 + B1_Mus1 SINE Alu 18 140 -8 2 1531 279 0 0 0 chr4 124107242 124107273 -31522847 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1531 1060 307 44 3 chr4 124107323 124107640 -31522480 - MTEa LTR MaLR -4 375 46 2 1531 250 245 49 78 chr4 124108342 124108444 -31521676 - L2a LINE L2 0 3426 3328 2 1531 632 236 204 17 chr4 124109416 124109597 -31520523 + ID_B1 SINE B4 9 223 -1 2 1531 345 160 25 62 chr4 124109699 124109779 -31520341 + MLT1G3 LTR MaLR 1 77 -518 2 1531 315 248 54 98 chr4 124109883 124109958 -31520162 + PB1 SINE Alu 1 72 -55 2 1531 1135 52 0 0 chr4 124109958 124110093 -31520027 + B1_Mm SINE Alu 1 135 -12 2 1531 1101 131 0 0 chr4 124110094 124110270 -31519850 + (GGA)n Simple_repeat Simple_repeat 3 178 0 2 1531 315 248 54 98 chr4 124110270 124110304 -31519816 + PB1 SINE Alu 73 107 -20 2 1531 212 371 29 0 chr4 124110312 124110382 -31519738 + ID SINE ID 5 76 -148 2 1531 612 282 134 35 chr4 124110636 124110801 -31519319 + MLT1B LTR MaLR 1 173 -217 2 1531 577 257 157 0 chr4 124110801 124110941 -31519179 - RSINE1 SINE B4 -1 164 3 2 1531 612 282 134 35 chr4 124110941 124111065 -31519055 + MLT1B LTR MaLR 174 319 -71 2 1531 306 0 0 0 chr4 124111422 124111456 -31518664 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1531 196 30 61 0 chr4 124111626 124111659 -31518461 + (CGGGGG)n Simple_repeat Simple_repeat 2 36 0 2 1531 284 351 18 0 chr4 124112119 124112230 -31517890 + MIR SINE MIR 38 150 -58 2 1531 241 262 55 64 chr4 124112871 124112981 -31517139 - B4 SINE B4 -17 275 167 2 1531 1171 54 0 0 chr4 124113116 124113264 -31516856 - B1_Mus1 SINE Alu 0 148 1 2 1531 2786 214 106 55 chr4 124114078 124114925 -31515195 + RMER19B LTR ERVK 1 890 -12 2 1531 296 191 16 0 chr4 124114983 124115046 -31515074 + MER5B DNA MER1_type 75 138 -40 2 1531 1200 176 5 5 chr4 124115442 124115648 -31514472 - B3 SINE B2 -6 210 5 2 1531 278 303 78 52 chr4 124115725 124116069 -31514051 + L2c LINE L2 3013 3369 -18 2 1531 309 286 51 0 chr4 124117260 124117358 -31512762 - MIRb SINE MIR -120 148 46 2 1531 483 18 0 0 chr4 124117575 124117631 -31512489 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1531 2499 138 56 96 chr4 124118002 124118296 -31511824 - RLTR24 LTR ERV1 0 529 212 2 1531 1001 54 0 8 chr4 124118296 124118427 -31511693 + B1_Mus1 SINE Alu 1 130 -18 2 1531 180 0 0 0 chr4 124118427 124118447 -31511673 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 2 1531 2499 138 56 96 chr4 124118447 124118702 -31511418 - RLTR24 LTR ERV1 -318 211 2 2 1531 245 309 0 0 chr4 124118816 124118884 -31511236 + MIRb SINE MIR 197 264 -4 2 1531 217 214 0 0 chr4 124119535 124119577 -31510543 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 2 1531 189 0 0 0 chr4 124120670 124120691 -31509429 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1531 339 44 0 0 chr4 124121428 124121473 -31508647 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1531 1003 247 66 27 chr4 124122161 124122185 -31507935 - B4A SINE B4 -3 289 270 2 1531 417 20 0 0 chr4 124122185 124122235 -31507885 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1531 1003 247 66 27 chr4 124122235 124122468 -31507652 - B4A SINE B4 -23 269 22 2 1531 294 324 79 6 chr4 124123356 124123507 -31506613 + MTE2a LTR MaLR 1 163 -196 2 1531 423 0 0 0 chr4 124123507 124123554 -31506566 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2 1531 294 324 79 6 chr4 124123554 124123579 -31506541 + MTE2a LTR MaLR 164 190 -169 2 1531 185 86 57 0 chr4 124123579 124123614 -31506506 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 2 1531 304 264 11 22 chr4 124123708 124123797 -31506323 + MTE2a LTR MaLR 275 362 -17 2 1531 237 320 10 30 chr4 124123895 124123995 -31506125 + MLT1H LTR MaLR 147 244 -305 2 191 394 346 29 43 chr4 124124887 124125234 -31504886 + L1MC LINE L1 4111 4452 -1694 2 1532 998 53 0 0 chr4 124125241 124125372 -31504748 - B1_Mus1 SINE Alu 0 148 18 2 1532 528 320 189 26 chr4 124125414 124125805 -31504315 + L1ME1 LINE L1 4497 4951 -1195 2 1532 279 271 161 39 chr4 124125911 124125928 -31504192 + L1ME1 LINE L1 5119 5132 -1014 2 1532 917 133 71 50 chr4 124125928 124126110 -31504010 + B2_Mm2 SINE B2 1 186 -9 2 1532 919 242 63 35 chr4 124126110 124126563 -31503557 + L1ME1 LINE L1 5133 5620 -559 2 1532 847 216 11 11 chr4 124126564 124126732 -31503388 + B3A SINE B2 1 168 -30 2 1532 549 0 0 0 chr4 124126732 124126793 -31503327 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1532 847 245 13 705 chr4 124126793 124126852 -31503268 + B3A SINE B2 164 215 -1 2 1532 370 314 110 47 chr4 124126857 124127238 -31502882 + L1ME1 LINE L1 5609 6013 -166 2 1532 548 204 9 9 chr4 124127335 124127449 -31502671 + PB1D9 SINE Alu 2 115 -5 2 1532 264 297 148 33 chr4 124128832 124128954 -31501166 - ORR1E LTR MaLR 0 379 244 2 1532 212 175 15 73 chr4 124129010 124129078 -31501042 + G-rich Low_complexity Low_complexity 2 65 0 2 1532 332 174 125 23 chr4 124129221 124129309 -31500811 - ORR1E LTR MaLR -262 97 1 2 1532 192 324 0 39 chr4 124130138 124130215 -31499905 + MIR3 SINE MIR 123 196 -12 2 1532 709 259 52 88 chr4 124130258 124130343 -31499777 + B4A SINE B4 2 85 -207 2 1532 1120 29 0 14 chr4 124130343 124130482 -31499638 + B1_Mus2 SINE Alu 2 138 -9 2 1532 401 0 0 20 chr4 124130482 124130532 -31499588 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1532 709 259 52 88 chr4 124130532 124130695 -31499425 + B4A SINE B4 86 241 -51 2 1532 391 151 39 44 chr4 124130874 124131054 -31499066 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1532 216 372 41 55 chr4 124131072 124131217 -31498903 + MIR SINE MIR 18 160 -102 2 1532 213 39 0 0 chr4 124131394 124131420 -31498700 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1532 420 143 0 0 chr4 124131510 124131580 -31498540 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1532 520 308 0 0 chr4 124131617 124131760 -31498360 + B1F SINE Alu 5 147 -2 2 1532 346 286 11 11 chr4 124134616 124134708 -31495412 + GA-rich Low_complexity Low_complexity 1 92 0 2 1532 234 186 119 0 chr4 124134815 124134874 -31495246 - MamRep564 Unknown Unknown -113 244 179 2 1532 354 80 0 0 chr4 124134883 124134933 -31495187 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1532 677 67 0 0 chr4 124134933 124135023 -31495097 - B1_Mus2 SINE Alu -6 141 52 2 1532 609 72 0 0 chr4 124135063 124135146 -31494974 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1532 594 128 0 0 chr4 124135365 124135459 -31494661 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 1532 358 298 43 14 chr4 124135867 124136074 -31494046 - ORR1E LTR MaLR -124 235 2 2 1532 195 279 0 16 chr4 124136089 124136151 -31493969 + MIR SINE MIR 58 118 -90 2 1532 216 0 0 0 chr4 124137103 124137127 -31492993 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 1532 1218 49 0 0 chr4 124137773 124137935 -31492185 + (TG)n Simple_repeat Simple_repeat 2 163 0 2 1532 528 30 0 0 chr4 124138003 124138069 -31492051 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1532 702 89 0 0 chr4 124138137 124138249 -31491871 + (TG)n Simple_repeat Simple_repeat 2 113 0 2 1532 230 222 139 0 chr4 124138253 124138325 -31491795 - B4 SINE B4 -17 275 194 3 1532 228 244 62 37 chr4 124138462 124138543 -31491577 - MT2B2 LTR ERVL -328 256 174 3 1532 569 267 55 0 chr4 124138483 124138629 -31491491 - ID_B1 SINE B4 -67 157 4 3 1532 235 303 143 22 chr4 124138756 124138847 -31491273 - MIRb SINE MIR -132 136 35 3 1532 973 208 72 0 chr4 124138929 124138966 -31491154 + ID SINE ID 3 39 -185 3 1532 288 0 0 0 chr4 124138966 124138998 -31491122 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1532 973 208 72 0 chr4 124138998 124139167 -31490953 + ID_B1 SINE B4 40 222 -2 3 1532 466 257 38 0 chr4 124140270 124140375 -31489745 + B1F2 SINE Alu 1 109 -40 3 1532 828 63 0 0 chr4 124140830 124140941 -31489179 + (GGGA)n Simple_repeat Simple_repeat 1 111 0 3 1532 1156 48 0 0 chr4 124141007 124141152 -31488968 + B1_Mus1 SINE Alu 4 148 0 3 1532 261 225 53 63 chr4 124141507 124141602 -31488518 - MIR3 SINE MIR -110 98 5 3 1532 361 282 70 41 chr4 124144182 124144398 -31485722 + MIR SINE MIR 13 240 -28 3 1532 477 263 47 17 chr4 124145090 124145317 -31484803 - L1MA5A LINE L1 -152 6016 5781 3 1532 205 266 21 0 chr4 124145318 124145412 -31484708 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 1532 574 185 0 15 chr4 124145450 124145582 -31484538 + (TG)n Simple_repeat Simple_repeat 1 130 0 3 1532 822 291 25 34 chr4 124145582 124145909 -31484211 - L1MA5A LINE L1 -507 5793 5470 3 1532 225 132 0 0 chr4 124146439 124146477 -31483643 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1532 489 285 18 35 chr4 124146487 124146658 -31483462 + MIR SINE MIR 53 220 -42 3 1532 947 213 23 123 chr4 124146963 124147305 -31482815 + RLTR12B LTR ERVK 47 354 -174 3 1532 495 0 0 0 chr4 124147707 124147762 -31482358 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1532 1299 179 202 64 chr4 124148257 124148633 -31481487 + RLTR23 LTR ERV1 3 430 0 3 1532 499 165 0 0 chr4 124149217 124149308 -31480812 - PB1D9 SINE Alu 0 120 30 3 1532 21 0 0 0 chr4 124149320 124149341 -31480779 + AT_rich Low_complexity Low_complexity 1 21 0 3 1532 465 19 0 0 chr4 124149566 124149620 -31480500 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1532 861 282 28 28 chr4 124149635 124149890 -31480230 - B4 SINE B4 -2 290 36 3 1532 399 259 63 49 chr4 124150221 124150363 -31479757 - B4A SINE B4 -148 144 1 3 1532 327 65 0 0 chr4 124150545 124150591 -31479529 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1532 295 317 47 47 chr4 124150607 124150713 -31479407 + L2c LINE L2 3281 3386 -1 3 1532 1064 267 38 24 chr4 124151034 124151322 -31478798 - B4A SINE B4 0 292 1 3 1532 233 253 222 78 chr4 124151654 124151821 -31478299 + MLT1H LTR MaLR 333 523 -26 3 1532 497 275 21 14 chr4 124151932 124152072 -31478048 - B1F2 SINE Alu -8 141 1 3 1532 219 368 79 17 chr4 124152778 124152955 -31477165 - B3A SINE B2 -1 197 10 3 1532 624 242 0 50 chr4 124152798 124152959 -31477161 - RSINE1 SINE B4 -6 159 7 3 1532 297 370 20 0 chr4 124153073 124153173 -31476947 + PB1D10 SINE Alu 6 107 -10 3 1532 241 254 0 0 chr4 124153194 124153223 -31476897 + A-rich Low_complexity Low_complexity 1 29 0 3 1532 1206 27 7 0 chr4 124153223 124153369 -31476751 + B1_Mm SINE Alu 1 147 0 3 1532 241 254 0 0 chr4 124153369 124153398 -31476722 + A-rich Low_complexity Low_complexity 30 58 0 3 1532 215 242 194 15 chr4 124153406 124153473 -31476647 + B3A SINE B2 4 82 -116 3 1532 585 287 54 46 chr4 124153439 124153680 -31476440 + B4A SINE B4 50 292 0 3 1532 241 308 0 15 chr4 124153685 124153751 -31476369 + (CATG)n Simple_repeat Simple_repeat 3 67 0 3 1532 239 216 0 0 chr4 124155104 124155155 -31474965 + G-rich Low_complexity Low_complexity 6 56 0 3 1532 23 0 0 0 chr4 124155893 124155916 -31474204 + AT_rich Low_complexity Low_complexity 1 23 0 3 1532 1036 71 35 0 chr4 124155985 124156126 -31473994 + B1_Mus2 SINE Alu 1 146 -1 3 1532 497 92 13 0 chr4 124156135 124156211 -31473909 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1532 1250 66 22 0 chr4 124156240 124156422 -31473698 - B2_Mm1a SINE B2 -7 186 1 3 1532 252 0 0 0 chr4 124157565 124157593 -31472527 + (G)n Simple_repeat Simple_repeat 1 28 0 3 1532 203 296 37 12 chr4 124158453 124158535 -31471585 + MIR SINE MIR 53 136 -72 3 1532 1044 297 36 4 chr4 124158723 124158997 -31471123 - B4 SINE B4 -5 287 5 3 1532 1004 279 148 15 chr4 124159441 124159852 -31470268 - MLT1C LTR MaLR -1 466 1 3 1532 303 310 11 11 chr4 124161457 124161545 -31468575 - L1M2 LINE L1 -2944 3199 3112 3 1532 896 73 80 7 chr4 124161547 124161684 -31468436 - B1_Mus1 SINE Alu -1 147 1 3 1532 227 217 0 0 chr4 124161866 124161912 -31468208 - MER117 DNA MER1_type -35 162 117 3 1532 793 129 0 43 chr4 124162712 124162898 -31467222 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 1532 604 264 62 46 chr4 124164859 124165054 -31465066 - B3A SINE B2 0 198 1 3 1532 234 0 0 0 chr4 124165220 124165246 -31464874 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1532 458 334 30 58 chr4 124166090 124166456 -31463664 + ORR1E LTR MaLR 6 360 -10 3 1532 614 302 204 35 chr4 124166989 124167696 -31462424 - L2 LINE L2 -2443 976 151 3 1532 257 299 162 7 chr4 124168003 124168151 -31461969 - Charlie4a DNA MER1_type 0 508 338 3 1532 328 320 21 0 chr4 124168151 124168248 -31461872 + PB1D10 SINE Alu 2 100 -17 3 1532 384 316 125 0 chr4 124168542 124168678 -31461442 - Charlie4a DNA MER1_type -266 242 90 3 1532 197 289 39 0 chr4 124168757 124168809 -31461311 + MIRm SINE MIR 28 81 -195 3 1532 2331 167 26 30 chr4 124168809 124169467 -31460653 - RLTR20D LTR ERVK 0 568 52 3 1532 1926 166 52 35 chr4 124170159 124170331 -31459789 + ORR1D1 LTR MaLR 1 164 -210 3 1532 252 0 0 0 chr4 124170331 124170359 -31459761 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1532 1926 166 52 35 chr4 124170359 124170554 -31459566 + ORR1D1 LTR MaLR 165 374 0 3 1532 287 344 80 18 chr4 124170737 124170900 -31459220 - L2a LINE L2 0 3426 3254 3 1532 282 316 25 41 chr4 124170951 124171073 -31459047 - L2a LINE L2 -254 3172 3053 3 1532 726 274 133 44 chr4 124171077 124171499 -31458621 - MLT1D LTR MaLR -3 502 10 3 1532 312 250 21 32 chr4 124171987 124172082 -31458038 - L2a LINE L2 -522 2897 2804 3 1532 536 213 49 0 chr4 124172100 124172222 -31457898 + L1ME1 LINE L1 6043 6170 -9 3 1532 226 395 42 36 chr4 124172455 124172623 -31457497 + MIR SINE MIR 14 182 -80 3 1532 539 174 17 60 chr4 124172634 124172671 -31457449 - MTD LTR MaLR 0 419 385 3 1532 3442 28 0 10 chr4 124172671 124173071 -31457049 + MTA_Mm LTR MaLR 1 396 0 3 1532 539 174 17 60 chr4 124173071 124173149 -31456971 - MTD LTR MaLR -35 384 309 3 1532 243 317 12 24 chr4 124173157 124173171 -31456949 + ID4_ SINE ID 1 38 -45 3 1532 267 286 18 0 chr4 124173171 124173227 -31456893 + tRNA-Thr-ACG_ tRNA tRNA 10 66 -11 3 1532 243 317 12 24 chr4 124173227 124173241 -31456879 + ID4_ SINE ID 39 83 0 3 1532 422 259 12 0 chr4 124173298 124173383 -31456737 + B4 SINE B4 195 280 -12 3 1532 327 236 112 0 chr4 124173641 124173730 -31456390 + MTD LTR MaLR 1 99 -320 3 1532 344 231 0 9 chr4 124173820 124173925 -31456195 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1532 231 340 74 11 chr4 124173938 124174033 -31456087 + MT2B2 LTR ERVL 156 256 -328 3 1532 307 283 42 42 chr4 124173957 124174053 -31456067 + PB1D7 SINE Alu 24 119 -1 3 1532 344 277 179 0 chr4 124174084 124174196 -31455924 + RSINE1 SINE B4 13 144 -21 3 1532 595 56 44 0 chr4 124174520 124174610 -31455510 + (TTCCC)n Simple_repeat Simple_repeat 2 95 0 3 1532 321 261 15 0 chr4 124176309 124176374 -31453746 + PB1D10 SINE Alu 3 68 -49 3 1532 911 189 7 0 chr4 124176375 124176523 -31453597 + B1_Mur4 SINE Alu 1 149 -1 3 1532 180 0 0 0 chr4 124176529 124176549 -31453571 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 3 1532 633 171 29 0 chr4 124176596 124176701 -31453419 + B1_Mur2 SINE Alu 37 144 -5 3 1532 618 339 39 39 chr4 124177140 124177422 -31452698 - RMER15 LTR ERVL -15 560 279 3 1532 279 280 0 31 chr4 124178732 124178861 -31451259 + T-rich Low_complexity Low_complexity 6 130 0 3 1532 503 108 24 0 chr4 124178861 124178944 -31451176 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 3 1532 381 308 9 18 chr4 124178945 124179054 -31451066 - B1_Mur1 SINE Alu -14 135 28 3 1532 315 321 27 0 chr4 124179183 124179295 -31450825 + LTR33C LTR ERVL 20 134 -495 3 1532 229 315 80 98 chr4 124179371 124179635 -31450485 + MLT2F LTR ERVL 272 530 -133 3 1532 466 289 69 60 chr4 124180413 124180513 -31449607 + MIRb SINE MIR 35 133 -135 3 1532 1916 133 98 21 chr4 124180513 124180850 -31449270 + ORR1B2 LTR MaLR 5 367 0 3 1532 466 289 69 60 chr4 124180850 124180981 -31449139 + MIRb SINE MIR 134 268 0 3 1532 394 302 95 0 chr4 124181025 124181141 -31448979 + L2a LINE L2 3300 3426 0 3 1532 1263 248 17 10 chr4 124181156 124181445 -31448675 + B4A SINE B4 2 292 0 3 1532 465 19 0 0 chr4 124181450 124181504 -31448616 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1532 222 253 19 2 chr4 124181798 124181856 -31448264 - MIR SINE MIR -63 145 87 3 1532 266 235 173 0 chr4 124181916 124181997 -31448123 - MIRb SINE MIR -92 176 82 3 1532 531 69 0 0 chr4 124182890 124182962 -31447158 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1532 325 231 125 36 chr4 124184267 124184379 -31445741 + MIRm SINE MIR 72 193 -83 3 1532 196 332 108 128 chr4 124185347 124185893 -31444227 - L2 LINE L2 -567 2852 2318 3 1532 315 270 22 0 chr4 124186112 124186201 -31443919 - MIRb SINE MIR -91 177 87 3 1532 607 324 76 14 chr4 124186278 124186488 -31443632 - ID_B1 SINE B4 0 224 2 3 1532 202 152 0 0 chr4 124186518 124186551 -31443569 - MIRc SINE MIR -120 148 116 3 1532 191 328 33 0 chr4 124189844 124189905 -31440215 + MIR SINE MIR 18 80 -182 3 1532 209 172 0 65 chr4 124189927 124189989 -31440131 + (TTATA)n Simple_repeat Simple_repeat 3 60 0 3 1532 212 309 74 0 chr4 124189994 124190075 -31440045 + MIR SINE MIR 120 206 -56 3 1532 183 100 0 0 chr4 124190075 124190105 -31440015 + (CATTA)n Simple_repeat Simple_repeat 5 34 0 4 1532 180 304 42 28 chr4 124190120 124190191 -31439929 + L2a LINE L2 3322 3393 -33 4 1532 248 274 0 56 chr4 124190455 124190544 -31439576 + Lx8 LINE L1 7089 7172 -301 4 1532 341 345 112 28 chr4 124191547 124191762 -31438358 + MIR SINE MIR 5 237 -25 4 1532 188 246 61 15 chr4 124191773 124191839 -31438281 - MIRb SINE MIR -23 245 177 4 1532 287 216 147 0 chr4 124191867 124191949 -31438171 - PB1D10 SINE Alu -8 119 29 4 1532 272 243 92 55 chr4 124192048 124192157 -31437963 - PB1D10 SINE Alu 0 117 5 4 1532 222 321 101 55 chr4 124192779 124193145 -31436975 + L2 LINE L2 782 1164 -2255 4 1532 208 256 241 39 chr4 124193258 124193490 -31436630 + L2 LINE L2 1458 1736 -1683 4 1532 518 0 16 0 chr4 124193571 124193633 -31436487 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1532 284 282 59 0 chr4 124193729 124193814 -31436306 + MIRb SINE MIR 52 141 -127 4 1532 539 244 0 109 chr4 124194558 124194696 -31435424 + RSINE1 SINE B4 3 125 -40 4 1532 578 135 10 0 chr4 124194696 124194800 -31435320 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1532 291 54 0 0 chr4 124194936 124194973 -31435147 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 4 1532 1209 44 0 0 chr4 124194975 124195112 -31435008 - B1_Mus1 SINE Alu -9 139 3 4 1532 436 323 99 91 chr4 124195397 124195802 -31434318 - MLT1A1 LTR MaLR 0 408 1 4 1532 250 318 54 9 chr4 124195920 124196031 -31434089 - MER103 DNA DNA -3 163 48 4 1532 642 109 0 0 chr4 124196050 124196151 -31433969 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1532 1156 246 47 16 chr4 124196186 124196442 -31433678 - B4A SINE B4 -26 266 3 4 1532 288 0 0 0 chr4 124197130 124197162 -31432958 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1532 213 217 0 21 chr4 124199151 124199198 -31430922 + L2a LINE L2 3381 3426 0 4 1532 450 0 0 0 chr4 124199598 124199648 -31430472 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1532 213 39 0 0 chr4 124200428 124200454 -31429666 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1532 255 61 0 0 chr4 124201112 124201145 -31428975 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1532 692 317 78 24 chr4 124201161 124201416 -31428704 - B4 SINE B4 -15 277 9 4 1532 376 333 122 47 chr4 124201582 124201944 -31428176 + L2b LINE L2 2986 3374 -1 4 1532 271 277 58 46 chr4 124202614 124202701 -31427419 + MIRb SINE MIR 98 189 -79 4 1532 198 255 183 19 chr4 124202874 124202978 -31427142 + MIRb SINE MIR 64 184 -84 4 1532 235 358 121 24 chr4 124203256 124203422 -31426698 + MIRb SINE MIR 82 263 -5 4 1532 242 224 0 20 chr4 124204786 124204836 -31425284 + CT-rich Low_complexity Low_complexity 1 49 0 4 1532 442 302 164 55 chr4 124205055 124205437 -31424683 + MLT1D LTR MaLR 36 446 -59 4 1532 217 325 62 39 chr4 124205824 124205952 -31424168 + MIRb SINE MIR 117 247 -21 4 1532 280 322 128 20 chr4 124206001 124206251 -31423869 + MLT1F2 LTR MaLR 36 312 -248 4 1532 336 367 31 44 chr4 124206272 124206497 -31423623 + HAL1-2a_MD LINE L1 2296 2517 -507 4 1532 290 328 57 43 chr4 124206600 124206740 -31423380 - MIRc SINE MIR -126 142 1 4 1532 2252 118 12 3 chr4 124206863 124207186 -31422934 - ORR1A3 LTR MaLR 0 326 1 4 1532 241 299 139 16 chr4 124208194 124208323 -31421797 - MIR3 SINE MIR -55 153 9 4 1532 639 224 6 28 chr4 124208624 124208766 -31421354 + B1_Mur2 SINE Alu 9 149 0 4 1532 185 284 107 36 chr4 124208789 124208873 -31421247 + MIRb SINE MIR 110 199 -69 4 1532 781 247 0 25 chr4 124208883 124209045 -31421075 + RSINE1 SINE B4 2 159 -6 4 1532 306 0 0 0 chr4 124209045 124209079 -31421041 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1532 363 23 0 0 chr4 124209079 124209122 -31420998 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1532 378 248 29 10 chr4 124209233 124209335 -31420785 + PB1D10 SINE Alu 6 109 -8 4 1532 618 14 0 0 chr4 124209335 124209406 -31420714 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 4 1532 345 323 24 24 chr4 124209773 124209938 -31420182 + (CATG)n Simple_repeat Simple_repeat 2 166 0 4 1532 236 30 0 29 chr4 124210155 124210189 -31419931 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 4 1532 800 224 29 59 chr4 124210191 124210395 -31419725 - B3A SINE B2 0 198 1 4 1532 1091 188 74 9 chr4 124210395 124210609 -31419511 - B4 SINE B4 -62 230 2 4 1532 233 314 79 21 chr4 124211469 124211609 -31418511 - MER103 DNA DNA -1 165 18 4 1532 648 313 70 84 chr4 124211710 124212069 -31418051 + ORR1E LTR MaLR 1 354 -5 4 1532 864 74 0 0 chr4 124212334 124212455 -31417665 + (GA)n Simple_repeat Simple_repeat 1 121 0 4 1532 270 325 56 26 chr4 124212552 124212708 -31417412 - B4 SINE B4 -19 273 69 4 1532 449 250 87 150 chr4 124213056 124213366 -31416754 - ORR1E LTR MaLR -86 284 11 4 1532 239 305 0 21 chr4 124213833 124213930 -31416190 + (TATATG)n Simple_repeat Simple_repeat 3 97 0 4 1532 245 29 29 0 chr4 124214062 124214096 -31416024 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1532 546 276 73 0 chr4 124214105 124214228 -31415892 - RSINE1 SINE B4 -31 134 3 4 1532 540 294 107 10 chr4 124215269 124215465 -31414655 + ID_B1 SINE B4 2 216 -8 4 1532 571 191 0 37 chr4 124216276 124216385 -31413735 + B1_Mur3 SINE Alu 1 105 -44 4 1532 355 119 17 17 chr4 124216818 124216867 -31413253 + B1_Mur2 SINE Alu 89 138 -11 4 1532 207 0 0 0 chr4 124216867 124216890 -31413230 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1532 594 89 0 0 chr4 124217067 124217157 -31412963 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 1532 953 301 53 15 chr4 124217165 124217431 -31412689 - B4A SINE B4 -16 276 1 4 1532 189 312 208 0 chr4 124217568 124217645 -31412475 + MIRb SINE MIR 107 199 -69 4 1532 402 310 18 9 chr4 124218808 124218922 -31411198 - MTE2a LTR MaLR 0 379 265 4 1532 609 97 0 0 chr4 124218968 124219071 -31411049 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 1532 635 236 114 11 chr4 124219075 124219251 -31410869 - MTE2a LTR MaLR -184 195 2 4 1532 300 83 0 0 chr4 124219417 124219465 -31410655 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 4 1532 351 0 0 0 chr4 124219466 124219505 -31410615 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1532 207 244 0 0 chr4 124220628 124220669 -31409451 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 4 1532 444 277 37 37 chr4 124220721 124220882 -31409238 - RSINE1 SINE B4 -4 161 1 4 1532 23 54 0 0 chr4 124220898 124220935 -31409185 + AT_rich Low_complexity Low_complexity 1 37 0 4 1532 305 242 39 78 chr4 124221401 124221504 -31408616 - B1_Mur3 SINE Alu -5 144 46 4 1532 1164 186 45 0 chr4 124221728 124221927 -31408193 + B3 SINE B2 2 209 -7 4 1532 911 196 6 23 chr4 124221980 124222152 -31407968 + ORR1D1 LTR MaLR 13 181 -193 4 1532 245 197 15 0 chr4 124222152 124222218 -31407902 + CT-rich Low_complexity Low_complexity 2 68 0 4 1532 1094 175 39 20 chr4 124222259 124222463 -31407657 + ORR1D1 LTR MaLR 166 373 -1 4 1532 289 228 0 0 chr4 124223176 124223233 -31406887 - MLT2B1 LTR ERVL -94 473 417 4 1532 659 281 0 7 chr4 124223405 124223552 -31406568 - B4 SINE B4 -4 288 143 4 1532 676 265 51 52 chr4 124223976 124224220 -31405900 + MER102b DNA MER1_type 1 239 -102 4 1532 180 0 0 0 chr4 124224220 124224240 -31405880 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 4 1532 604 289 54 93 chr4 124224240 124224317 -31405803 + MER102b DNA MER1_type 240 320 -21 4 1532 236 357 8 45 chr4 124224590 124224722 -31405398 - MIR3 SINE MIR -69 139 13 4 1532 281 26 26 0 chr4 124225381 124225419 -31404701 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1532 618 195 80 16 chr4 124225574 124225699 -31404421 + B1_Mur1 SINE Alu 2 134 -15 4 1532 246 205 0 161 chr4 124226587 124226680 -31403440 - MTEb LTR MaLR -24 355 278 4 1532 1132 260 40 27 chr4 124226832 124227132 -31402988 - MTEb LTR MaLR -75 304 1 4 1532 978 69 10 43 chr4 124227734 124228039 -31402081 + (TG)n Simple_repeat Simple_repeat 1 294 0 4 1532 381 318 113 31 chr4 124228094 124228289 -31401831 - B4A SINE B4 -8 284 74 4 1532 355 253 0 0 chr4 124228284 124228359 -31401761 - MER58A DNA MER1_type -145 79 5 4 1532 213 39 0 0 chr4 124229366 124229392 -31400728 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1532 223 383 28 8 chr4 124229684 124229836 -31400284 - MIR SINE MIR -1 261 114 4 1532 585 0 0 0 chr4 124229864 124229929 -31400191 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1532 449 288 1 8 chr4 124229931 124230088 -31400032 + L1MA4 LINE L1 5780 5936 -364 4 1532 276 271 12 0 chr4 124230121 124230206 -31399914 + A-rich Low_complexity Low_complexity 5 90 0 4 1532 972 271 31 42 chr4 124230456 124230745 -31399375 + B4A SINE B4 7 292 0 4 1532 287 211 0 10 chr4 124230761 124230857 -31399263 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 1532 709 268 135 16 chr4 124231366 124231685 -31398435 - ORR1E LTR MaLR 0 359 3 4 1532 1188 144 76 5 chr4 124231714 124231924 -31398196 + URR1B DNA MER1_type 1 225 0 4 1532 222 61 61 0 chr4 124232394 124232443 -31397677 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1532 447 346 69 14 chr4 124232969 124233245 -31396875 - HERV16-int LTR ERVL -744 4923 4633 4 1532 898 250 66 83 chr4 124233252 124233553 -31396567 + MTE2b LTR MaLR 84 379 0 4 1532 737 349 85 35 chr4 124233759 124234444 -31395676 - HERV16-int LTR ERVL -2056 3701 2983 4 1532 923 336 67 19 chr4 124234460 124234878 -31395242 - HERV16-int LTR ERVL -2121 2875 2438 4 1532 2266 173 27 10 chr4 124234892 124235306 -31394814 + MTC LTR MaLR 1 421 0 4 1532 255 343 27 18 chr4 124235451 124235561 -31394559 - HERV16-int LTR ERVL -3196 1800 1690 4 1532 330 26 0 0 chr4 124236131 124236170 -31393950 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1532 753 141 7 36 chr4 124236172 124236312 -31393808 - B1_Mur4 SINE Alu -13 137 2 4 1532 745 155 40 47 chr4 124236567 124236716 -31393404 + B1_Mur3 SINE Alu 2 149 0 4 1532 289 346 85 77 chr4 124236749 124236996 -31393124 + B4A SINE B4 43 291 -1 4 1532 210 338 0 0 chr4 124237002 124237073 -31393047 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1532 595 250 0 0 chr4 124237121 124237241 -31392879 + ID_B1 SINE B4 84 203 -21 5 1532 956 17 0 8 chr4 124237253 124237372 -31392748 + (GGAA)n Simple_repeat Simple_repeat 2 119 0 5 1532 310 239 120 0 chr4 124237392 124237484 -31392636 + PB1D10 SINE Alu 14 116 -1 5 1532 254 261 14 14 chr4 124237484 124237554 -31392566 + GA-rich Low_complexity Low_complexity 1 70 0 5 1532 198 71 0 0 chr4 124237554 124237582 -31392538 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 5 1532 1265 140 22 26 chr4 124238107 124238334 -31391786 - URR1A DNA MER1_type 0 226 1 5 1532 381 357 82 43 chr4 124238578 124239182 -31390938 - L2c LINE L2 -79 3308 2681 5 1532 771 312 70 10 chr4 124239874 124240175 -31389945 - MLT1I LTR MaLR -92 319 1 5 1532 450 0 0 0 chr4 124240402 124240452 -31389668 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1532 351 0 0 0 chr4 124240452 124240490 -31389630 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1532 473 318 159 12 chr4 124240805 124241063 -31389057 + MLT1H2 LTR MaLR 192 487 -2 5 1532 487 299 131 10 chr4 124241263 124241554 -31388566 + L1MA6 LINE L1 5972 6297 -3 5 1532 1443 191 152 19 chr4 124241591 124241953 -31388167 + MTD LTR MaLR 1 410 -9 5 1532 302 395 73 20 chr4 124241991 124242195 -31387925 - LTR16A1 LTR ERVL -199 257 43 5 1532 185 201 19 24 chr4 124242277 124242351 -31387769 - L2a LINE L2 -287 3088 3018 5 1532 203 381 32 0 chr4 124242409 124242535 -31387585 - L2 LINE L2 -527 2892 2763 5 1532 1091 199 20 5 chr4 124243019 124243221 -31386899 + B3 SINE B2 1 205 -11 5 1532 545 280 95 32 chr4 124243337 124243558 -31386562 - HERV16-int LTR ERVL -4761 235 1 5 1532 248 297 53 18 chr4 124243566 124243679 -31386441 - LTR16A1 LTR ERVL -5 451 335 5 1532 798 168 0 40 chr4 124244207 124244356 -31385764 + B1F2 SINE Alu 2 144 -5 5 1532 273 98 0 0 chr4 124244417 124244458 -31385662 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1532 477 0 0 0 chr4 124244458 124244510 -31385610 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1532 287 386 35 7 chr4 124244712 124244867 -31385253 - MIR SINE MIR -58 204 53 5 1532 573 195 107 23 chr4 124244917 124245048 -31385072 + B1_Mm SINE Alu 6 147 0 5 1532 292 102 28 28 chr4 124245051 124245122 -31384998 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 5 1532 222 37 0 0 chr4 124245137 124245164 -31384956 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 5 1532 303 342 115 24 chr4 124245321 124245731 -31384389 + LTR16A LTR ERVL 1 447 -4 5 1532 252 281 38 76 chr4 124245781 124245939 -31384181 - L2a LINE L2 -198 3228 3077 5 1532 295 361 106 19 chr4 124246042 124246307 -31383813 - L2a LINE L2 -659 2760 2473 5 1532 204 111 0 0 chr4 124246631 124246667 -31383453 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 5 1532 203 240 7 37 chr4 124247419 124247494 -31382626 - MIRb SINE MIR -76 192 122 5 1532 322 272 0 24 chr4 124247697 124247780 -31382340 + ID4 SINE ID 1 81 -2 5 1532 842 121 7 22 chr4 124247813 124247948 -31382172 + B1_Mur4 SINE Alu 9 141 -9 5 1532 401 0 0 20 chr4 124248574 124248624 -31381496 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1532 558 139 213 39 chr4 124249772 124249899 -31380221 + B1_Mur4 SINE Alu 2 150 0 5 1532 723 158 0 0 chr4 124249903 124250030 -31380090 + GA-rich Low_complexity Low_complexity 5 131 0 5 1532 209 161 0 0 chr4 124252878 124252909 -31377211 + C-rich Low_complexity Low_complexity 2 32 0 5 1532 231 286 13 25 chr4 124253898 124253977 -31376143 - MIR SINE MIR -80 128 51 5 1532 549 267 20 14 chr4 124254047 124254195 -31375925 + B1F SINE Alu 1 149 0 5 1532 636 270 50 64 chr4 124254214 124254416 -31375704 + B4 SINE B4 31 229 -63 5 1532 237 178 0 0 chr4 124254416 124254461 -31375659 + GA-rich Low_complexity Low_complexity 1 45 0 5 1532 231 283 67 0 chr4 124254475 124254535 -31375585 + B4 SINE B4 215 278 -14 5 1532 189 0 0 0 chr4 124254948 124254969 -31375151 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1532 1164 61 0 0 chr4 124254969 124255116 -31375004 - B1_Mus2 SINE Alu 0 147 1 5 1532 230 242 0 132 chr4 124255827 124255854 -31374266 + B4 SINE B4 15 38 -254 5 1532 1934 124 93 17 chr4 124255854 124256207 -31373913 - ORR1C2 LTR MaLR 0 384 5 5 1532 230 242 0 132 chr4 124256207 124256255 -31373865 + B4 SINE B4 39 80 -212 5 191 198 0 0 0 chr4 124256255 124256277 -31373843 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1533 1182 48 0 0 chr4 124256277 124256423 -31373697 - B1_Mm SINE Alu 0 147 2 5 1533 461 200 133 0 chr4 124256451 124256556 -31373564 + ID_B1 SINE B4 93 211 -13 5 1533 654 13 0 0 chr4 124256556 124256631 -31373489 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1533 1053 192 38 5 chr4 124256780 124256989 -31373131 + B3 SINE B2 1 216 0 5 1533 441 103 0 0 chr4 124257152 124257220 -31372900 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1533 889 305 13 0 chr4 124259633 124259869 -31370251 - Tigger7 DNA MER2_type -2246 245 7 5 1533 188 0 74 0 chr4 124261382 124261409 -31368711 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 5 1533 459 0 0 0 chr4 124262437 124262488 -31367632 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1533 228 122 0 0 chr4 124262728 124262769 -31367351 + (CAT)n Simple_repeat Simple_repeat 1 41 0 5 1533 279 323 0 31 chr4 124262993 124263089 -31367031 - MER5A1 DNA MER1_type -73 93 1 5 1533 292 358 8 8 chr4 124263102 124263223 -31366897 - MER5B DNA MER1_type -3 175 55 5 1533 667 206 15 0 chr4 124265049 124265185 -31364935 - ID_B1 SINE B4 -86 138 1 5 1533 327 320 19 10 chr4 124265200 124265304 -31364816 - PB1D10 SINE Alu -12 105 1 5 1533 947 263 5 0 chr4 124265325 124265538 -31364582 - B3 SINE B2 -2 214 1 5 1533 283 271 29 0 chr4 124265540 124265610 -31364510 - Charlie4a DNA MER1_type -72 436 365 5 1533 21 36 0 0 chr4 124265824 124265852 -31364268 + AT_rich Low_complexity Low_complexity 1 28 0 5 1533 295 161 32 0 chr4 124266471 124266533 -31363587 - B3A SINE B2 -134 64 1 5 1533 650 148 65 0 chr4 124266616 124266724 -31363396 - B3 SINE B2 -88 128 14 5 1533 507 226 26 9 chr4 124266816 124266932 -31363188 + PB1D9 SINE Alu 2 119 -1 5 1533 798 169 163 0 chr4 124267195 124267379 -31362741 + B3 SINE B2 1 214 -2 5 1533 518 214 10 0 chr4 124267717 124267820 -31362300 + PB1D10 SINE Alu 5 108 -9 5 1533 445 277 127 61 chr4 124267834 124267999 -31362121 + B3A SINE B2 7 182 -16 5 1533 198 0 0 0 chr4 124268396 124268418 -31361702 + (G)n Simple_repeat Simple_repeat 1 22 0 5 1533 269 235 0 0 chr4 124268477 124268545 -31361575 + Lx6 LINE L1 7367 7434 -26 5 1533 777 119 0 0 chr4 124268572 124268706 -31361414 + BC1_Mm scRNA scRNA 1 134 -18 5 1533 275 257 14 14 chr4 124269011 124269082 -31361038 + ID4_ SINE ID 11 81 -2 5 1533 456 19 0 0 chr4 124269178 124269231 -31360889 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1533 1027 98 86 0 chr4 124269231 124269405 -31360715 + B2_Mm2 SINE B2 3 191 -4 5 1533 240 111 0 0 chr4 124271120 124271156 -31358964 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1533 217 316 0 0 chr4 124271295 124271371 -31358749 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1533 521 257 14 54 chr4 124271558 124271706 -31358414 - ID_B1 SINE B4 0 224 83 5 1533 242 287 146 8 chr4 124274757 124274887 -31355233 + MER117 DNA MER1_type 47 194 -3 5 1533 737 268 75 36 chr4 124275401 124275836 -31354284 - L1ME4a LINE L1 -71 6053 5658 5 1533 724 216 11 31 chr4 124275925 124276116 -31354004 - RMER30 DNA MER1_type 0 202 16 5 1533 338 305 83 17 chr4 124276272 124276392 -31353728 - L1ME4a LINE L1 -764 5409 5282 5 1533 207 0 0 0 chr4 124276462 124276485 -31353635 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1533 914 97 30 0 chr4 124276485 124276619 -31353501 - B1_Mus1 SINE Alu -8 140 3 5 1533 531 69 0 0 chr4 124276638 124276710 -31353410 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1533 1293 153 71 13 chr4 124276736 124276961 -31353159 - RLTR41 LTR ERV1 -40 406 169 5 1533 233 229 0 0 chr4 124277080 124277128 -31352992 - ID_B1 SINE B4 -34 190 143 5 1533 490 277 18 0 chr4 124277132 124277244 -31352876 - PB1D9 SINE Alu 0 120 7 5 1533 773 113 0 0 chr4 124277272 124277387 -31352733 + B2_Mm2 SINE B2 1 115 -80 5 1533 333 0 0 0 chr4 124277391 124277428 -31352692 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1533 612 273 0 8 chr4 124277481 124277614 -31352506 - RSINE1 SINE B4 -29 136 5 5 1533 334 383 80 24 chr4 124277778 124278067 -31352053 - L1ME4a LINE L1 -1234 4912 4608 5 1533 413 176 104 52 chr4 124278335 124278431 -31351689 + B1_Mur1 SINE Alu 30 130 -19 5 1533 232 27 54 0 chr4 124278443 124278480 -31351640 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1533 197 163 0 20 chr4 124278490 124278540 -31351580 + GA-rich Low_complexity Low_complexity 4 52 0 5 1533 591 230 6 75 chr4 124278636 124278796 -31351324 - B1F2 SINE Alu 0 149 1 5 1533 297 314 16 2 chr4 124278972 124279058 -31351062 + ID4_ SINE ID 1 89 -63 5 1533 1191 61 0 0 chr4 124279058 124279192 -31350928 + B1_Mus2 SINE Alu 1 134 -13 5 1533 203 0 37 0 chr4 124279192 124279219 -31350901 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1533 1191 61 0 0 chr4 124279219 124279231 -31350889 + B1_Mus2 SINE Alu 135 146 -1 5 1533 246 359 29 10 chr4 124279231 124279248 -31350872 + BC1_Mm scRNA scRNA 90 106 -46 5 1533 936 136 11 6 chr4 124279250 124279427 -31350693 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 5 1533 340 346 121 15 chr4 124279603 124279809 -31350311 + MIRb SINE MIR 8 241 -27 5 1533 425 294 71 28 chr4 124281403 124281585 -31348535 - MIRc SINE MIR -41 227 38 5 1533 960 146 0 0 chr4 124281959 124282123 -31347997 + (GAA)n Simple_repeat Simple_repeat 2 165 0 5 1533 360 0 0 0 chr4 124282123 124282163 -31347957 + (CAA)n Simple_repeat Simple_repeat 1 40 0 5 1533 380 294 27 18 chr4 124283343 124283454 -31346666 - MIRm SINE MIR -127 149 38 6 1533 203 333 0 0 chr4 124284349 124284424 -31345696 + A-rich Low_complexity Low_complexity 1 75 0 6 1533 699 216 0 0 chr4 124284983 124285108 -31345012 + B3A SINE B2 26 150 -48 6 1533 363 44 0 0 chr4 124285108 124285153 -31344967 + (CATA)n Simple_repeat Simple_repeat 4 48 0 6 1533 860 212 69 50 chr4 124285252 124285454 -31344666 + ID_B1 SINE B4 3 211 -13 6 1533 231 36 0 0 chr4 124285454 124285482 -31344638 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1533 860 212 69 50 chr4 124285482 124285497 -31344623 + ID_B1 SINE B4 212 224 0 6 1533 191 351 65 58 chr4 124285806 124285945 -31344175 + MIRb SINE MIR 103 242 -26 6 1533 532 242 11 1 chr4 124286212 124286328 -31343792 - RSINE1 SINE B4 -44 121 4 6 1533 662 248 21 0 chr4 124286426 124286567 -31343553 - B1F2 SINE Alu 0 149 6 6 1533 335 313 36 96 chr4 124286428 124286594 -31343526 - B4 SINE B4 -69 223 68 6 1533 2119 183 132 57 chr4 124286960 124287453 -31342667 + MT2A LTR ERVL 1 530 -3 6 1533 826 206 0 0 chr4 124288178 124288324 -31341796 + B1_Mur3 SINE Alu 4 149 0 6 1533 304 343 9 9 chr4 124288583 124288692 -31341428 + PB1D10 SINE Alu 2 110 -7 6 1533 507 69 0 0 chr4 124288909 124288981 -31341139 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1533 680 232 79 7 chr4 124289230 124289382 -31340738 + RSINE1 SINE B4 3 165 0 6 1533 921 143 0 0 chr4 124289407 124289540 -31340580 + B1_Mus2 SINE Alu 2 134 -13 6 1533 203 143 0 39 chr4 124289573 124289594 -31340526 + A-rich Low_complexity Low_complexity 1 21 0 6 1533 447 68 247 0 chr4 124289594 124289667 -31340453 + 4.5SRNA scRNA scRNA 1 91 -3 6 1533 1051 91 28 7 chr4 124289667 124289811 -31340309 + B1_Mus1 SINE Alu 2 148 0 6 1533 203 143 0 39 chr4 124289811 124289839 -31340281 + A-rich Low_complexity Low_complexity 22 48 0 6 1533 1329 88 44 0 chr4 124289848 124290030 -31340090 + B2_Mm1t SINE B2 1 190 -3 6 1533 340 322 0 0 chr4 124290107 124290197 -31339923 + RSINE1 SINE B4 69 158 -7 6 1533 378 0 0 0 chr4 124290534 124290576 -31339544 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1533 852 164 0 39 chr4 124291115 124291394 -31338726 + C-rich Low_complexity Low_complexity 1 268 0 6 1533 440 173 0 6 chr4 124291692 124291771 -31338349 + B1_Mur1 SINE Alu 53 128 -21 6 1533 441 0 0 0 chr4 124291771 124291820 -31338300 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1533 315 0 0 0 chr4 124291820 124291854 -31338266 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1533 186 43 0 0 chr4 124291873 124291896 -31338224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1533 503 182 213 8 chr4 124291966 124292088 -31338032 + B1_Mur1 SINE Alu 3 149 0 6 1533 257 207 121 12 chr4 124292365 124292448 -31337672 - PB1D7 SINE Alu 0 120 29 6 1533 180 72 45 45 chr4 124294134 124294178 -31335942 + C-rich Low_complexity Low_complexity 3 46 0 6 1533 242 170 0 0 chr4 124294449 124294496 -31335624 + L1M5 LINE L1 5428 5474 -650 6 1533 357 253 13 0 chr4 124294748 124294827 -31335293 - ID4 SINE ID -3 80 1 6 1533 473 293 20 77 chr4 124295369 124295617 -31334503 + L1ME4a LINE L1 5887 6120 -4 6 1533 317 291 0 23 chr4 124296417 124296505 -31333615 + ID_B1 SINE B4 114 199 -25 6 1533 186 265 216 7 chr4 124297140 124297288 -31332832 + L2 LINE L2 2900 3078 -341 6 1533 318 301 15 10 chr4 124297939 124298057 -31332063 - MIRc SINE MIR -144 124 5 6 1533 225 65 0 0 chr4 124298091 124298122 -31331998 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1533 284 188 94 0 chr4 124299319 124299383 -31330737 + PB1 SINE Alu 50 119 -8 6 1533 1735 0 21 0 chr4 124299407 124299596 -31330524 + B2_Mm1a SINE B2 1 193 0 6 1533 256 186 0 0 chr4 124300075 124300118 -31330002 - ID4_ SINE ID -38 45 3 6 1533 271 304 208 0 chr4 124301097 124301222 -31328898 + MIR SINE MIR 43 193 -69 6 1533 393 272 11 0 chr4 124301982 124302074 -31328046 + PB1D10 SINE Alu 5 97 -20 6 1533 917 230 79 56 chr4 124302097 124302364 -31327756 + B4 SINE B4 20 292 0 6 1533 250 349 62 16 chr4 124302552 124302680 -31327440 + MIRb SINE MIR 117 250 -18 6 1533 372 22 0 0 chr4 124304510 124304555 -31325565 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1533 213 342 75 25 chr4 124304565 124304685 -31325435 + MIR SINE MIR 46 171 -91 6 1533 592 266 98 58 chr4 124304862 124305137 -31324983 + B4A SINE B4 4 289 -3 6 1533 26 50 0 0 chr4 124305165 124305205 -31324915 + AT_rich Low_complexity Low_complexity 1 40 0 6 1533 266 363 36 36 chr4 124305361 124305501 -31324619 - MIR SINE MIR -34 228 89 6 1533 202 246 123 0 chr4 124305643 124305708 -31324412 + MIRb SINE MIR 120 192 -76 6 1533 918 211 85 10 chr4 124305753 124305954 -31324166 + B3 SINE B2 1 216 0 6 1533 1149 65 13 0 chr4 124305978 124306133 -31323987 + B2_Mm2 SINE B2 1 157 -38 6 1533 333 0 0 0 chr4 124306133 124306170 -31323950 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 6 1533 414 0 0 0 chr4 124306903 124306949 -31323171 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1533 692 319 64 4 chr4 124306971 124307204 -31322916 - B4A SINE B4 -22 270 24 6 1533 691 248 14 0 chr4 124307917 124308058 -31322062 - B1_Mur1 SINE Alu -1 148 6 6 1533 342 291 72 13 chr4 124308081 124308111 -31322009 - B4A SINE B4 -46 246 86 6 1533 785 36 3 6 chr4 124308111 124308233 -31321887 - B1_Mus1 SINE Alu 0 120 1 6 1533 234 241 0 0 chr4 124308243 124308330 -31321790 + T-rich Low_complexity Low_complexity 1 87 0 6 1533 427 206 0 0 chr4 124308333 124308406 -31321714 - ID_B1 SINE B4 0 224 152 6 1533 333 235 47 12 chr4 124308406 124308418 -31321702 - B1F SINE Alu 0 148 61 6 1533 185 0 40 0 chr4 124308433 124308458 -31321662 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1533 383 0 21 0 chr4 124308470 124308517 -31321603 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 6 1533 722 97 79 0 chr4 124308517 124308631 -31321489 - B1_Mur3 SINE Alu -12 137 15 6 1533 670 260 6 39 chr4 124308720 124308770 -31321350 - RSINE1 SINE B4 -12 153 107 6 1533 2427 114 30 153 chr4 124308770 124309279 -31320841 + RLTR41 LTR ERV1 1 446 0 6 1533 670 260 6 39 chr4 124309279 124309384 -31320736 - RSINE1 SINE B4 -59 106 3 6 1533 280 284 23 0 chr4 124309593 124309681 -31320439 + L3 LINE CR1 4162 4251 -238 6 1533 321 257 40 0 chr4 124311123 124311197 -31318923 - PB1D10 SINE Alu -15 102 26 6 1533 537 289 118 0 chr4 124311133 124311285 -31318835 - ID_B1 SINE B4 -54 170 1 6 1533 316 362 90 22 chr4 124311703 124311881 -31318239 + MIRb SINE MIR 50 239 -29 6 1533 207 0 0 0 chr4 124311914 124311937 -31318183 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1533 369 253 127 132 chr4 124312395 124312600 -31317520 - MLT2B5 LTR ERVL -316 285 82 6 1533 850 173 106 53 chr4 124312448 124312656 -31317464 - MTEa LTR MaLR -160 219 1 6 1533 288 344 82 7 chr4 124312716 124312841 -31317279 - PB1D7 SINE Alu -19 130 3 6 1533 443 255 59 0 chr4 124312974 124313076 -31317044 + ID_B1 SINE B4 99 206 -18 6 1533 201 74 0 0 chr4 124313103 124313130 -31316990 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 6 1533 3452 162 68 51 chr4 124313272 124314012 -31316108 + RMER13A LTR ERVK 1 752 -108 6 1533 496 187 109 27 chr4 124314092 124314202 -31315918 - PB1D7 SINE Alu -1 119 1 6 1533 510 17 0 0 chr4 124314944 124315003 -31315117 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1533 496 276 90 132 chr4 124315016 124315250 -31314870 - B4 SINE B4 -4 288 65 6 1533 228 309 107 9 chr4 124315372 124315511 -31314609 + L2a LINE L2 2917 3053 -373 6 1533 986 148 73 44 chr4 124315686 124315891 -31314229 + B3 SINE B2 3 213 -3 6 1533 216 204 119 0 chr4 124316071 124316157 -31313963 - B1F SINE Alu 0 117 19 6 1533 286 300 65 32 chr4 124316160 124316253 -31313867 - RSINE1 SINE B4 -22 143 48 6 1533 245 314 0 41 chr4 124316287 124316360 -31313760 - MER63D DNA AcHobo -692 369 300 6 1533 218 191 48 0 chr4 124316663 124316705 -31313415 - B1F SINE Alu -22 127 84 6 1533 377 311 98 0 chr4 124317457 124317579 -31312541 + MIR3 SINE MIR 15 148 -60 6 1533 284 303 61 69 chr4 124318617 124318748 -31311372 + ID_B1 SINE B4 80 209 -15 6 1533 328 237 249 0 chr4 124318777 124318950 -31311170 - MER33 DNA MER1_type -82 242 27 6 1533 269 309 40 40 chr4 124319488 124319589 -31310531 + MLT1A0 LTR MaLR 1 101 -264 6 1533 183 42 0 0 chr4 124319663 124319687 -31310433 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1533 405 131 0 0 chr4 124319698 124319782 -31310338 + (T)n Simple_repeat Simple_repeat 1 84 0 6 1533 1225 48 7 0 chr4 124319782 124319928 -31310192 - B1_Mm SINE Alu 0 147 1 6 1533 438 20 0 0 chr4 124320437 124320488 -31309632 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 6 1533 285 75 0 0 chr4 124320552 124320592 -31309528 + (TGGG)n Simple_repeat Simple_repeat 2 41 0 6 1533 225 218 91 0 chr4 124321371 124321426 -31308694 + L2a LINE L2 3366 3425 -1 6 1533 1501 56 17 0 chr4 124321846 124322025 -31308095 - B2_Mm2 SINE B2 -13 182 1 6 1533 321 286 10 20 chr4 124322031 124322131 -31307989 - MIRb SINE MIR -11 257 159 6 1533 528 297 43 24 chr4 124322159 124322366 -31307754 + MIRb SINE MIR 26 236 -32 6 1533 369 75 0 0 chr4 124322812 124322865 -31307255 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1533 458 312 82 74 chr4 124323572 124323977 -31306143 + LTR16C LTR ERVL 16 423 -66 7 1533 490 274 37 37 chr4 124324486 124324649 -31305471 + RSINE1 SINE B4 3 165 0 7 1533 373 305 53 23 chr4 124324883 124325054 -31305066 + MIRb SINE MIR 91 266 -2 7 1533 519 209 0 76 chr4 124325874 124325993 -31304127 + PB1D10 SINE Alu 1 110 -7 7 1533 288 248 19 56 chr4 124326010 124326117 -31304003 + MT2B LTR ERVL 155 257 -344 7 1533 507 186 88 0 chr4 124326033 124326135 -31303985 + B1_Mur1 SINE Alu 12 122 -27 7 1533 357 24 0 0 chr4 124328115 124328157 -31301963 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1533 272 310 0 14 chr4 124328465 124328537 -31301583 + G-rich Low_complexity Low_complexity 4 74 0 7 1533 390 21 0 0 chr4 124328722 124328769 -31301351 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1533 307 314 82 48 chr4 124328858 124329005 -31301115 + ID_B1 SINE B4 1 152 -72 7 1533 468 51 0 0 chr4 124329372 124329431 -31300689 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 7 1533 201 74 0 0 chr4 124330089 124330116 -31300004 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 7 1533 484 125 131 34 chr4 124330809 124330938 -31299182 + Lx2 LINE L1 6561 6643 -354 7 1533 1337 105 60 37 chr4 124330938 124331156 -31298964 + Lx2 LINE L1 6775 6997 0 7 1533 1509 144 0 9 chr4 124331542 124331766 -31298354 - URR1B DNA MER1_type -3 222 1 7 1533 267 318 45 10 chr4 124332015 124332151 -31297969 - MIRb SINE MIR -21 241 92 7 1533 492 32 0 0 chr4 124333297 124333359 -31296761 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1533 21 0 0 0 chr4 124334607 124334628 -31295492 + GC_rich Low_complexity Low_complexity 1 21 0 7 1533 202 220 10 113 chr4 124334750 124334945 -31295175 + G-rich Low_complexity Low_complexity 5 179 0 7 1533 254 167 40 40 chr4 124334873 124334948 -31295172 + (CGGGG)n Simple_repeat Simple_repeat 3 77 0 7 1533 21 0 0 0 chr4 124334972 124334993 -31295127 + GC_rich Low_complexity Low_complexity 1 21 0 7 1533 23 78 0 0 chr4 124335027 124335078 -31295042 + GC_rich Low_complexity Low_complexity 1 51 0 7 1533 236 301 10 10 chr4 124335171 124335275 -31294845 + (CGG)n Simple_repeat Simple_repeat 2 105 0 7 1533 214 160 0 57 chr4 124335437 124335490 -31294630 + (CGG)n Simple_repeat Simple_repeat 1 50 0 7 1533 22 35 0 0 chr4 124336135 124336164 -31293956 + GC_rich Low_complexity Low_complexity 1 29 0 7 1533 21 36 0 0 chr4 124336228 124336256 -31293864 + GC_rich Low_complexity Low_complexity 1 28 0 7 1533 219 69 0 0 chr4 124336407 124336436 -31293684 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1533 211 143 0 23 chr4 124337085 124337128 -31292992 + A-rich Low_complexity Low_complexity 1 42 0 7 1533 23 33 0 0 chr4 124337739 124337769 -31292351 + AT_rich Low_complexity Low_complexity 1 30 0 7 1533 429 36 0 0 chr4 124340764 124340819 -31289301 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1533 189 0 0 0 chr4 124341045 124341066 -31289054 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1533 206 286 0 0 chr4 124341129 124341178 -31288942 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1533 396 0 0 0 chr4 124341288 124341332 -31288788 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1533 207 0 0 0 chr4 124341332 124341354 -31288766 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1533 282 323 76 38 chr4 124342398 124342530 -31287590 + MIRb SINE MIR 86 222 -46 7 1533 291 349 39 8 chr4 124342715 124342845 -31287275 - MIRb SINE MIR -113 155 22 7 1533 443 331 43 37 chr4 124343163 124343351 -31286769 + MIR SINE MIR 70 258 -4 7 1533 352 373 28 6 chr4 124343408 124343607 -31286513 - MIRc SINE MIR -34 228 34 7 1533 400 302 22 0 chr4 124344112 124344251 -31285869 + (TCCA)n Simple_repeat Simple_repeat 2 143 0 7 1533 207 253 37 25 chr4 124345778 124345859 -31284261 + (CCCCAG)n Simple_repeat Simple_repeat 2 83 0 7 1533 792 174 0 36 chr4 124345984 124346121 -31283999 + B1_Mus1 SINE Alu 1 132 -16 7 1533 205 313 0 15 chr4 124346702 124346770 -31283350 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1533 465 236 9 54 chr4 124346861 124346973 -31283147 - PB1D10 SINE Alu 0 117 11 7 1533 1673 26 11 0 chr4 124346973 124347163 -31282957 + B2_Mm1a SINE B2 2 193 0 7 1533 537 16 0 0 chr4 124347392 124347454 -31282666 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1533 327 104 0 0 chr4 124347896 124347944 -31282176 + (ATG)n Simple_repeat Simple_repeat 1 48 0 7 1533 203 122 39 39 chr4 124350872 124350949 -31279171 + T-rich Low_complexity Low_complexity 2 78 0 7 1533 221 329 26 0 chr4 124351588 124351664 -31278456 - ID4 SINE ID -4 79 2 7 1533 206 209 0 0 chr4 124352508 124352537 -31277583 + T-rich Low_complexity Low_complexity 18 46 0 7 1533 1060 89 7 33 chr4 124352537 124352688 -31277432 - B1_Mus1 SINE Alu 0 148 2 7 1533 206 209 0 0 chr4 124352688 124352701 -31277419 + T-rich Low_complexity Low_complexity 5 17 0 7 1533 257 307 119 0 chr4 124353131 124353232 -31276888 + PB1D7 SINE Alu 8 120 0 7 1533 364 149 51 51 chr4 124353236 124353314 -31276806 + B3A SINE B2 1 78 -120 7 1533 590 215 198 28 chr4 124354020 124354202 -31275918 + B3 SINE B2 1 213 -3 7 1533 428 246 156 0 chr4 124354665 124354787 -31275333 + ID_B1 SINE B4 82 222 -2 7 1533 869 129 64 7 chr4 124354865 124355005 -31275115 - B1_Mus1 SINE Alu 0 148 1 7 1533 702 278 47 47 chr4 124355035 124355314 -31274806 + B4 SINE B4 1 279 -13 7 1533 228 67 0 0 chr4 124355318 124355348 -31274772 + (CG)n Simple_repeat Simple_repeat 2 31 0 7 1533 432 0 0 0 chr4 124355348 124355395 -31274725 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1533 533 15 15 0 chr4 124355778 124355844 -31274276 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1533 898 34 0 0 chr4 124355844 124355961 -31274159 - B1_Mus2 SINE Alu -2 145 29 7 1533 445 220 139 125 chr4 124355847 124356055 -31274065 - B4 SINE B4 -71 221 11 7 1533 327 331 6 67 chr4 124356343 124356508 -31273612 + MER105 DNA DNA 47 201 -3 7 1533 211 295 119 5 chr4 124357224 124357336 -31272784 - MIR SINE MIR -83 185 64 7 1533 1445 38 31 31 chr4 124359099 124359129 -31270991 - B2_Mm1a SINE B2 0 193 161 7 1533 330 26 0 0 chr4 124359129 124359168 -31270952 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1533 1445 38 31 31 chr4 124359168 124359330 -31270790 - B2_Mm1a SINE B2 -33 160 1 7 1533 406 108 0 30 chr4 124360075 124360132 -31269988 + B1_Mus2 SINE Alu 81 137 -10 7 1533 212 0 36 0 chr4 124360132 124360160 -31269960 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1533 189 358 95 0 chr4 124360182 124360277 -31269843 - MIRb SINE MIR -156 112 9 7 1533 372 267 140 46 chr4 124361196 124361305 -31268815 + PB1D10 SINE Alu 9 127 0 7 1533 408 102 0 0 chr4 124361453 124361512 -31268608 + B2_Mm2 SINE B2 77 135 -60 7 1533 1284 78 62 0 chr4 124361514 124361693 -31268427 + B2_Mm2 SINE B2 1 190 -5 7 1533 510 143 103 19 chr4 124362061 124362168 -31267952 + PB1D9 SINE Alu 5 120 0 7 1533 308 242 70 0 chr4 124362180 124362290 -31267830 + B1F1 SINE Alu 1 120 0 7 1533 701 232 0 7 chr4 124362312 124362455 -31267665 + B3 SINE B2 7 148 -68 7 1533 529 208 0 38 chr4 124362462 124362567 -31267553 + B1_Mur1 SINE Alu 42 142 -7 7 1533 21 0 0 0 chr4 124362578 124362599 -31267521 + AT_rich Low_complexity Low_complexity 1 21 0 7 1533 1191 68 7 0 chr4 124362631 124362777 -31267343 + B1_Mus2 SINE Alu 1 147 0 7 1533 21 0 0 0 chr4 124362777 124362798 -31267322 + AT_rich Low_complexity Low_complexity 1 21 0 7 1533 403 294 41 32 chr4 124363708 124363905 -31266215 + MIRb SINE MIR 1 199 -9 7 1533 328 224 60 0 chr4 124364086 124364153 -31265967 + ID_B1 SINE B4 100 170 -54 7 1533 311 232 85 0 chr4 124364153 124364168 -31265952 + PB1D10 SINE Alu 19 107 -10 7 1533 499 246 24 8 chr4 124364266 124364393 -31265727 - ID_B1 SINE B4 -94 130 2 7 1533 492 183 162 37 chr4 124364559 124364695 -31265425 + ID_B1 SINE B4 3 155 -69 7 1533 447 196 4 0 chr4 124364696 124364797 -31265323 + B1_Mur2 SINE Alu 2 103 -46 7 1533 262 305 46 37 chr4 124364841 124364950 -31265170 - PB1D10 SINE Alu -7 110 1 7 1533 362 261 110 21 chr4 124365181 124365326 -31264794 + RSINE1 SINE B4 8 165 0 7 1533 1395 81 16 5 chr4 124365364 124365551 -31264569 + B2_Mm2 SINE B2 1 189 -6 7 1533 647 217 43 7 chr4 124365559 124365698 -31264422 + B1_Mur1 SINE Alu 1 144 -5 7 1533 610 211 0 39 chr4 124365730 124365858 -31264262 + B1_Mus1 SINE Alu 5 127 -21 7 1533 223 216 0 39 chr4 124365863 124365940 -31264180 + GA-rich Low_complexity Low_complexity 4 77 0 7 1533 798 171 168 130 chr4 124365957 124365985 -31264135 + B3 SINE B2 1 26 -190 7 1533 306 0 0 0 chr4 124365985 124366019 -31264101 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 7 1533 802 35 246 17 chr4 124366022 124366140 -31263980 - B1_Mus2 SINE Alu -1 146 2 7 1533 798 171 168 130 chr4 124366140 124366315 -31263805 + B3 SINE B2 27 216 0 7 1533 188 157 39 0 chr4 124366325 124366376 -31263744 + T-rich Low_complexity Low_complexity 5 57 0 7 1533 375 129 16 0 chr4 124366380 124366442 -31263678 - PB1D9 SINE Alu -1 119 57 7 1533 300 53 0 0 chr4 124366448 124366486 -31263634 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1533 764 255 19 0 chr4 124366487 124366648 -31263472 - B3 SINE B2 -47 169 6 7 1533 207 0 0 0 chr4 124366669 124366692 -31263428 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1533 844 192 264 0 chr4 124366701 124366868 -31263252 - B3 SINE B2 -1 215 5 7 1533 345 335 70 0 chr4 124367159 124367317 -31262803 + MIRb SINE MIR 65 233 -35 7 1533 300 311 0 22 chr4 124367349 124367441 -31262679 + PB1D10 SINE Alu 23 112 -5 8 1533 662 193 141 49 chr4 124367540 124367601 -31262519 - B3 SINE B2 -1 215 146 8 1533 195 42 0 0 chr4 124367601 124367625 -31262495 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 8 1533 662 193 141 49 chr4 124367625 124367693 -31262427 - B3 SINE B2 -71 145 69 8 1533 1766 16 0 0 chr4 124367693 124367886 -31262234 + B2_Mm1a SINE B2 1 193 0 8 1533 662 193 141 49 chr4 124367886 124367940 -31262180 - B3 SINE B2 -148 68 16 8 1533 727 175 40 47 chr4 124368008 124368158 -31261962 + B1_Mur1 SINE Alu 1 149 0 8 1533 282 298 70 38 chr4 124368190 124368332 -31261788 + MIRb SINE MIR 46 200 -68 8 1533 228 301 40 14 chr4 124368431 124368505 -31261615 + B4A SINE B4 4 79 -213 8 1533 214 245 57 0 chr4 124368503 124368556 -31261564 + RSINE1 SINE B4 100 155 -10 8 1533 371 287 16 178 chr4 124368909 124368984 -31261136 - RSINE1 SINE B4 -2 163 99 8 1533 428 205 18 18 chr4 124368984 124369098 -31261022 + Lx9 LINE L1 7531 7644 0 8 1533 371 287 16 178 chr4 124369098 124369213 -31260907 - RSINE1 SINE B4 -67 98 4 8 1533 23 0 0 0 chr4 124369312 124369335 -31260785 + AT_rich Low_complexity Low_complexity 1 23 0 8 1533 1247 34 0 20 chr4 124369509 124369659 -31260461 + B1_Mus1 SINE Alu 2 148 0 8 1533 544 228 82 14 chr4 124369717 124369864 -31260256 - B3 SINE B2 -54 162 6 8 1533 284 324 45 9 chr4 124370131 124370243 -31259877 - PB1D10 SINE Alu 0 117 2 8 1533 694 174 0 55 chr4 124371145 124371291 -31258829 + B1_Mur1 SINE Alu 12 149 0 8 1533 278 330 9 55 chr4 124371376 124371485 -31258635 + MIR SINE MIR 72 175 -87 8 1533 180 250 56 56 chr4 124371689 124371778 -31258342 + MIRb SINE MIR 111 199 -69 8 1533 202 29 0 54 chr4 124371829 124371866 -31258254 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 8 1533 567 234 73 0 chr4 124371902 124372039 -31258081 - B1F2 SINE Alu -1 148 2 8 1533 199 0 31 31 chr4 124372158 124372190 -31257930 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 8 1533 760 158 75 0 chr4 124372263 124372396 -31257724 - B1_Mur2 SINE Alu 0 149 7 8 1533 198 235 19 38 chr4 124373842 124373895 -31256225 + MIRb SINE MIR 30 81 -187 8 1533 420 111 0 0 chr4 124373896 124373959 -31256161 + (T)n Simple_repeat Simple_repeat 1 63 0 8 1533 1184 48 0 20 chr4 124373962 124374110 -31256010 - B1_Mm SINE Alu -1 146 2 8 1533 188 163 0 23 chr4 124374147 124374191 -31255929 + CT-rich Low_complexity Low_complexity 4 46 0 8 1533 370 175 210 12 chr4 124374191 124374272 -31255848 - B1_Mur4 SINE Alu -15 105 9 8 1533 195 42 0 0 chr4 124374294 124374318 -31255802 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 8 1533 962 170 187 0 chr4 124374376 124374558 -31255562 + B3 SINE B2 1 216 0 8 1533 1308 20 0 0 chr4 124374578 124374724 -31255396 + B1_Mm SINE Alu 2 147 0 8 1533 446 265 39 0 chr4 124374749 124374851 -31255269 - U6 snRNA snRNA -1 106 1 8 1533 227 179 0 0 chr4 124374895 124374934 -31255186 + B2_Mm1t SINE B2 3 41 -152 8 1533 435 261 95 9 chr4 124374938 124375054 -31255066 + RSINE1 SINE B4 1 126 -39 8 1533 222 37 0 0 chr4 124375070 124375097 -31255023 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1533 524 241 18 123 chr4 124375116 124375296 -31254824 - B3A SINE B2 0 198 36 8 1533 1536 187 78 83 chr4 124375298 124375695 -31254425 + MTD LTR MaLR 5 399 -20 8 1533 215 227 0 138 chr4 124375751 124375838 -31254282 + RSINE1 SINE B4 91 165 0 8 1533 2634 142 14 37 chr4 124376059 124376490 -31253630 - MTC LTR MaLR 0 421 1 8 1533 226 375 3 101 chr4 124376700 124376839 -31253281 - L2a LINE L2 -17 3409 3230 8 1533 30 27 0 0 chr4 124377880 124377917 -31252203 + GC_rich Low_complexity Low_complexity 1 37 0 8 1533 323 219 184 37 chr4 124378445 124378554 -31251566 - Arthur1B DNA Tip100 -1098 127 3 8 1533 204 302 78 42 chr4 124379869 124380035 -31250085 - MIR SINE MIR -7 255 84 8 1533 225 0 0 0 chr4 124380136 124380161 -31249959 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1533 1403 71 38 0 chr4 124380162 124380346 -31249774 - B2_Mm2 SINE B2 -3 192 2 8 1533 480 89 0 0 chr4 124380346 124380425 -31249695 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1533 272 296 0 0 chr4 124380515 124380596 -31249524 + C-rich Low_complexity Low_complexity 1 81 0 8 1533 242 56 0 27 chr4 124381273 124381310 -31248810 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1533 414 0 0 0 chr4 124383669 124383715 -31246405 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1533 361 255 10 30 chr4 124384019 124384034 -31246086 + ID_B1 SINE B4 126 224 0 8 1533 596 93 0 0 chr4 124384034 124384120 -31246000 + B1_Mus2 SINE Alu 62 147 0 8 1533 1050 59 81 0 chr4 124384258 124384394 -31245726 - B1_Mus1 SINE Alu -1 147 1 8 1533 342 0 0 0 chr4 124385558 124385596 -31244524 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1533 288 203 230 0 chr4 124386717 124386791 -31243329 - PB1D7 SINE Alu -17 103 13 8 1533 414 0 0 0 chr4 124386837 124386883 -31243237 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1533 255 252 144 80 chr4 124386897 124387022 -31243098 - RSINE1 SINE B4 -22 143 11 8 1534 280 214 86 0 chr4 124387771 124387841 -31242279 + ID_B1 SINE B4 94 169 -55 8 1534 221 241 178 33 chr4 124387841 124387861 -31242259 + PB1D10 SINE Alu 13 115 -2 8 1534 702 11 11 0 chr4 124387918 124388006 -31242114 - B1_Mm SINE Alu -1 146 58 8 1534 380 321 56 12 chr4 124388025 124388186 -31241934 - B4A SINE B4 -59 233 66 8 1534 670 267 107 5 chr4 124388247 124388443 -31241677 - B3 SINE B2 0 216 1 8 1534 972 60 234 26 chr4 124388642 124388796 -31241324 - B2_Mm2 SINE B2 -8 187 2 8 1534 201 171 0 0 chr4 124388954 124388989 -31241131 + T-rich Low_complexity Low_complexity 1 35 0 8 1534 334 211 75 40 chr4 124388989 124389162 -31240958 - RMER17C LTR ERVK -135 275 97 8 1534 1262 21 7 0 chr4 124389193 124389338 -31240782 - B1_Mus2 SINE Alu 0 147 2 8 1534 1571 47 0 10 chr4 124389343 124389537 -31240583 - B2_Mm1a SINE B2 0 193 2 8 1534 1466 85 0 0 chr4 124389540 124389729 -31240391 - B2_Mm1t SINE B2 -3 190 2 8 1534 737 236 148 6 chr4 124389750 124389933 -31240187 - B3 SINE B2 -7 209 1 8 1534 678 260 16 16 chr4 124390032 124390216 -31239904 - B3A SINE B2 -14 184 1 8 1534 473 76 620 0 chr4 124390350 124390442 -31239678 - B1_Mur4 SINE Alu 0 150 2 8 1534 310 161 18 0 chr4 124390467 124390523 -31239597 - HAL1-3A_ME LINE L1 -827 2031 1975 8 1534 870 194 0 0 chr4 124390523 124390805 -31239315 + (TG)n Simple_repeat Simple_repeat 1 282 0 8 1534 535 268 1 4 chr4 124390813 124390928 -31239192 - PB1D10 SINE Alu -1 116 7 8 1534 226 236 30 119 chr4 124390846 124390947 -31239173 - MT2B2 LTR ERVL -343 241 150 8 1534 225 0 0 0 chr4 124391011 124391036 -31239084 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1534 675 167 19 0 chr4 124391049 124391157 -31238963 - B1_Mur2 SINE Alu -1 148 39 8 1534 284 254 0 17 chr4 124391237 124391297 -31238823 + B1F SINE Alu 2 60 -89 8 1534 255 318 0 15 chr4 124391238 124391305 -31238815 + ID_B1 SINE B4 84 149 -75 8 1534 1622 47 0 5 chr4 124391315 124391509 -31238611 + B2_Mm1t SINE B2 1 193 0 8 1534 331 154 39 0 chr4 124392695 124392747 -31237373 - B1_Mus1 SINE Alu -92 56 3 8 1534 885 235 60 5 chr4 124393867 124393921 -31236199 - B3 SINE B2 0 216 163 8 1534 369 0 0 0 chr4 124393921 124393962 -31236158 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1534 885 235 60 5 chr4 124393962 124394108 -31236012 - B3 SINE B2 -54 162 5 8 1534 680 192 220 6 chr4 124394272 124394445 -31235675 - B3 SINE B2 -6 210 1 8 1534 710 168 70 42 chr4 124394462 124394605 -31235515 - B1_Mus1 SINE Alu -1 147 1 8 1534 544 121 0 29 chr4 124394609 124394711 -31235409 + T-rich Low_complexity Low_complexity 2 100 0 8 1534 219 36 0 0 chr4 124394712 124394740 -31235380 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 8 1534 729 23 0 0 chr4 124394756 124394842 -31235278 + B2_Mm2 SINE B2 2 87 -108 8 1534 398 186 43 0 chr4 124394901 124394971 -31235149 - B1_Mur2 SINE Alu -18 131 59 8 1534 323 312 17 68 chr4 124395019 124395136 -31234984 - RSINE1 SINE B4 -2 163 53 8 1534 220 208 19 0 chr4 124395166 124395219 -31234901 - PB1D10 SINE Alu 0 117 64 8 1534 284 259 148 0 chr4 124395228 124395309 -31234811 + PB1D9 SINE Alu 11 103 -17 8 1534 210 323 92 51 chr4 124395309 124395326 -31234794 + B4A SINE B4 96 197 -95 8 1534 228 71 0 0 chr4 124395836 124395864 -31234256 + B2_Mm1t SINE B2 81 108 -85 8 1534 207 186 0 0 chr4 124395949 124395992 -31234128 + A-rich Low_complexity Low_complexity 1 43 0 8 1534 209 97 0 0 chr4 124396997 124397028 -31233092 - MIR SINE MIR -92 116 86 8 1534 497 221 38 19 chr4 124397049 124397155 -31232965 + L2a LINE L2 3309 3416 -10 8 1534 21 0 0 0 chr4 124397161 124397182 -31232938 + AT_rich Low_complexity Low_complexity 1 21 0 8 1534 905 140 49 0 chr4 124397269 124397412 -31232708 - B1_Mur4 SINE Alu 0 150 1 8 1534 943 191 25 44 chr4 124397434 124397637 -31232483 - B3 SINE B2 -1 215 17 8 1534 832 300 48 0 chr4 124397643 124397853 -31232267 - B4A SINE B4 -63 229 10 8 1534 216 67 0 0 chr4 124397873 124397903 -31232217 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1534 925 146 0 7 chr4 124397905 124398043 -31232077 - B1_Mur3 SINE Alu -11 138 2 8 1534 337 175 32 0 chr4 124398223 124398286 -31231834 + B1_Mur3 SINE Alu 5 69 -80 9 1534 1619 41 0 10 chr4 124398447 124398642 -31231478 - B2_Mm1a SINE B2 0 193 1 9 1534 671 237 40 0 chr4 124399053 124399205 -31230915 - RSINE1 SINE B4 -7 158 1 9 1534 562 198 78 23 chr4 124399520 124399649 -31230471 + B1_Mur1 SINE Alu 8 143 -6 9 1534 258 116 0 0 chr4 124399947 124399990 -31230130 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 9 1534 1336 101 0 5 chr4 124400510 124400699 -31229421 - B2_Mm2 SINE B2 -6 189 2 9 1534 396 312 62 49 chr4 124401309 124401471 -31228649 - RSINE1 SINE B4 -1 164 1 9 1534 305 222 111 0 chr4 124401648 124401720 -31228400 + PB1D7 SINE Alu 40 119 -1 9 1534 327 281 0 24 chr4 124401739 124401823 -31228297 + ID4_ SINE ID 1 82 -1 9 1534 427 187 111 9 chr4 124402181 124402289 -31227831 + PB1D9 SINE Alu 2 120 0 9 1534 339 312 32 90 chr4 124402500 124402655 -31227465 - B1F SINE Alu -1 148 3 9 1534 859 151 71 14 chr4 124402690 124402831 -31227289 - B1_Mur2 SINE Alu 0 149 1 9 1534 723 54 0 0 chr4 124402840 124402932 -31227188 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 9 1534 1392 206 0 15 chr4 124402939 124403200 -31226920 - Lx6 LINE L1 -4 7456 7200 9 1534 1319 229 65 27 chr4 124403320 124403692 -31226428 - Lx6 LINE L1 -282 7178 6793 9 1534 340 286 41 64 chr4 124404760 124404980 -31225140 - B4A SINE B4 -50 242 28 9 1534 1283 14 0 7 chr4 124404998 124405143 -31224977 - B1_Mus2 SINE Alu -3 144 1 9 1534 189 74 0 0 chr4 124405371 124405398 -31224722 + (GGA)n Simple_repeat Simple_repeat 2 28 0 9 1534 183 42 0 0 chr4 124407361 124407385 -31222735 + (GTTTG)n Simple_repeat Simple_repeat 3 26 0 9 1534 959 105 8 0 chr4 124407387 124407520 -31222600 - B1_Mus2 SINE Alu -13 134 1 9 1534 492 220 29 128 chr4 124407520 124407623 -31222497 - MTD LTR MaLR -210 209 106 9 1534 1146 71 0 0 chr4 124407623 124407764 -31222356 + B1_Mus2 SINE Alu 1 141 -6 9 1534 492 220 29 128 chr4 124407764 124407832 -31222288 - MTD LTR MaLR -314 105 55 9 1534 577 186 132 0 chr4 124407850 124407979 -31222141 + B1_Mus2 SINE Alu 2 147 0 9 1534 1012 25 8 0 chr4 124407991 124408113 -31222007 + B1_Mus1 SINE Alu 26 148 0 9 1534 290 319 6 66 chr4 124408238 124408264 -31221856 + YREP_Mm Unknown Unknown 156 321 -1487 9 1534 686 236 13 20 chr4 124408264 124408415 -31221705 - ID_B1 SINE B4 -2 222 73 9 1534 1133 97 0 0 chr4 124409722 124409866 -31220254 - B1_Mus1 SINE Alu 0 148 5 9 1534 1190 83 77 0 chr4 124409904 124410085 -31220035 - B2_Mm2 SINE B2 0 195 1 9 1534 327 227 101 11 chr4 124410189 124410278 -31219842 - B1F1 SINE Alu -51 98 2 9 1534 477 181 75 0 chr4 124410484 124410578 -31219542 + PB1D9 SINE Alu 20 120 0 9 1534 1380 70 16 0 chr4 124411336 124411523 -31218597 - B2_Mm1t SINE B2 -2 191 2 9 1534 320 278 65 78 chr4 124411575 124411756 -31218364 + L1M1 LINE L1 5602 5783 -517 9 1534 1210 65 113 0 chr4 124411756 124411924 -31218196 + B2_Mm2 SINE B2 3 189 -6 9 1534 320 278 65 78 chr4 124411924 124411972 -31218148 + L1M1 LINE L1 5784 5828 -472 9 1534 443 143 275 0 chr4 124412023 124412114 -31218006 + PB1D9 SINE Alu 5 120 0 9 1534 513 0 0 0 chr4 124412176 124412233 -31217887 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1534 957 147 7 0 chr4 124412233 124412369 -31217751 - B1_Mur4 SINE Alu -9 141 5 9 1534 188 0 74 0 chr4 124412384 124412411 -31217709 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1534 1143 96 0 0 chr4 124412411 124412548 -31217572 - B1_Mus2 SINE Alu -9 138 2 9 1534 483 276 45 45 chr4 124413262 124413395 -31216725 - ETnERV2-int LTR ERVK -204 7202 7070 9 1534 314 202 253 0 chr4 124417235 124417314 -31212806 + B1F SINE Alu 48 146 -3 9 1534 207 0 0 0 chr4 124417368 124417391 -31212729 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1534 1291 34 0 0 chr4 124417391 124417537 -31212583 - B1_Mm SINE Alu 0 147 2 9 1534 289 277 0 152 chr4 124417588 124417720 -31212400 + BC1_Mm scRNA scRNA 2 113 -39 9 1534 1237 48 0 0 chr4 124417884 124418031 -31212089 - B1_Mm SINE Alu 0 147 1 9 1534 636 213 72 43 chr4 124418169 124418366 -31211754 + B3A SINE B2 7 216 0 9 1534 230 331 56 3 chr4 124418589 124418724 -31211396 + MIR SINE MIR 20 162 -46 9 1534 409 306 88 7 chr4 124419942 124420090 -31210030 - MIRb SINE MIR -8 260 101 9 1534 487 163 111 10 chr4 124420602 124420701 -31209419 + B1F SINE Alu 34 142 -7 9 1534 525 212 0 26 chr4 124421232 124421348 -31208772 + B1F SINE Alu 5 117 -32 9 1534 428 327 0 0 chr4 124421375 124421479 -31208641 + RSINE1 SINE B4 3 106 -59 9 1534 663 221 0 0 chr4 124421638 124421801 -31208319 + CT-rich Low_complexity Low_complexity 2 164 0 9 1534 795 121 111 22 chr4 124421802 124421937 -31208183 - B1_Mus1 SINE Alu 0 148 2 9 1534 588 222 49 0 chr4 124421975 124422119 -31208001 + RMER10B LTR ERVL 197 347 -51 9 1534 257 182 35 35 chr4 124422198 124422255 -31207865 - RSINE1 SINE B4 -107 58 2 9 1534 736 115 0 58 chr4 124422517 124422637 -31207483 - B2_Mm2 SINE B2 -81 114 2 9 1534 824 189 60 16 chr4 124422695 124422878 -31207242 - B2_Mm2 SINE B2 0 195 5 9 1534 854 161 0 27 chr4 124422893 124423040 -31207080 - B1_Mur4 SINE Alu -6 144 2 9 1534 799 197 208 0 chr4 124423067 124423245 -31206875 - B3 SINE B2 0 216 2 9 1534 311 159 81 58 chr4 124423605 124423706 -31206414 - B1F1 SINE Alu -1 116 2 9 1534 210 118 0 0 chr4 124424301 124424335 -31205785 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 1534 26 0 0 0 chr4 124424388 124424414 -31205706 + AT_rich Low_complexity Low_complexity 1 26 0 9 1534 799 192 14 7 chr4 124424471 124424618 -31205502 - B1_Mur3 SINE Alu 0 149 2 9 1534 252 226 0 0 chr4 124424665 124424727 -31205393 + CT-rich Low_complexity Low_complexity 4 65 0 9 1534 695 207 63 14 chr4 124424727 124424869 -31205251 - B1_Mur2 SINE Alu 0 149 1 9 1534 355 273 45 97 chr4 124424888 124425042 -31205078 - MIRb SINE MIR -77 191 46 9 1534 261 244 0 0 chr4 124425100 124425165 -31204955 - L2c LINE L2 -251 3175 3110 9 1534 834 281 10 0 chr4 124425520 124425723 -31204397 + B3 SINE B2 1 205 -11 9 1534 259 327 48 0 chr4 124425830 124425934 -31204186 + L2a LINE L2 3317 3425 -1 9 1534 363 113 0 0 chr4 124426643 124426705 -31203415 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1534 264 344 0 0 chr4 124427251 124427315 -31202805 + B4A SINE B4 87 150 -142 9 1534 366 23 0 0 chr4 124427813 124427856 -31202264 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1534 215 333 120 0 chr4 124427856 124427931 -31202189 - PB1D10 SINE Alu -15 102 19 9 1534 517 256 21 146 chr4 124427929 124427958 -31202162 - ID_B1 SINE B4 -56 168 140 9 1534 180 0 0 0 chr4 124427958 124427978 -31202142 + (TCG)n Simple_repeat Simple_repeat 3 22 0 9 1534 517 256 21 146 chr4 124427978 124428140 -31201980 - ID_B1 SINE B4 -85 139 1 9 1534 274 240 108 72 chr4 124428241 124428380 -31201740 + MIR SINE MIR 54 197 -65 9 1534 315 0 0 0 chr4 124430308 124430343 -31199777 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1534 1077 61 0 103 chr4 124430343 124430508 -31199612 - B1_Mus1 SINE Alu 0 148 1 9 1534 368 314 13 67 chr4 124430845 124430865 -31199255 + ID SINE ID 62 73 -151 9 1534 355 245 31 123 chr4 124430865 124431028 -31199092 + B1F SINE Alu 1 148 -1 9 1534 483 281 113 87 chr4 124431302 124431532 -31198588 + B4A SINE B4 1 236 -56 9 1534 513 280 90 32 chr4 124432081 124432236 -31197884 + RSINE1 SINE B4 2 165 0 9 1534 931 142 0 0 chr4 124432292 124432426 -31197694 - B1_Mur4 SINE Alu -15 135 2 9 1534 243 79 0 0 chr4 124432511 124432549 -31197571 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1534 231 61 0 0 chr4 124432544 124432577 -31197543 + (GA)n Simple_repeat Simple_repeat 1 33 0 9 1534 1044 276 17 10 chr4 124432595 124432884 -31197236 - B4 SINE B4 0 292 2 9 1534 256 232 73 54 chr4 124433649 124433766 -31196354 + B1F SINE Alu 1 128 -20 9 1534 754 260 13 89 chr4 124434024 124434095 -31196025 - B4A SINE B4 -3 289 231 9 1534 1675 31 0 0 chr4 124434095 124434287 -31195833 - B2_Mm1a SINE B2 0 193 2 9 1534 754 260 13 89 chr4 124434287 124434528 -31195592 - B4A SINE B4 -62 230 1 9 1534 404 268 97 9 chr4 124434815 124434928 -31195192 - ID_B1 SINE B4 -5 219 97 9 1534 548 257 35 14 chr4 124435032 124435174 -31194946 - B1F SINE Alu 0 149 5 9 1534 276 306 0 90 chr4 124435073 124435195 -31194925 - MT2B LTR ERVL -341 260 150 9 1534 548 194 8 0 chr4 124435280 124435414 -31194706 + CT-rich Low_complexity Low_complexity 1 135 0 9 1534 581 149 21 0 chr4 124435414 124435508 -31194612 - B1_Mus1 SINE Alu -51 97 2 9 1534 354 242 93 21 chr4 124435423 124435520 -31194600 - B4 SINE B4 -114 178 75 9 1534 222 297 68 0 chr4 124435575 124435649 -31194471 - ID4_ SINE ID -3 80 2 9 1534 669 175 9 9 chr4 124435905 124436020 -31194100 - PB1D9 SINE Alu -5 115 1 9 1534 744 215 0 0 chr4 124436080 124436421 -31193699 + (CA)n Simple_repeat Simple_repeat 1 341 0 9 1534 408 250 0 0 chr4 124436449 124436521 -31193599 - RSINE1 SINE B4 -66 99 28 9 1534 225 254 73 15 chr4 124436627 124436695 -31193425 + B4A SINE B4 86 157 -135 9 1534 362 281 29 10 chr4 124436635 124436739 -31193381 + PB1D10 SINE Alu 12 117 0 9 1534 218 312 90 13 chr4 124437128 124437206 -31192914 - PB1 SINE Alu -43 84 1 9 1534 330 250 75 0 chr4 124437136 124437216 -31192904 - ID_B1 SINE B4 -69 155 70 1 1534 927 144 35 79 chr4 124437361 124437564 -31192556 + B2_Mm2 SINE B2 2 195 0 1 1534 766 254 96 0 chr4 124437744 124437941 -31192179 + B4A SINE B4 5 220 -72 1 1534 377 266 134 75 chr4 124438369 124438503 -31191617 + ID_B1 SINE B4 82 223 -1 1 1534 946 184 0 0 chr4 124438566 124438713 -31191407 - B1_Mur4 SINE Alu -1 149 3 1 1534 252 222 0 24 chr4 124438718 124438784 -31191336 + T-rich Low_complexity Low_complexity 16 81 0 1 1534 1240 54 0 0 chr4 124438784 124438932 -31191188 - B1_Mus1 SINE Alu 0 148 1 1 1534 252 222 0 24 chr4 124438932 124438948 -31191172 + T-rich Low_complexity Low_complexity 1 15 0 1 1534 778 238 27 0 chr4 124438988 124439135 -31190985 + B3A SINE B2 2 152 -46 1 1534 480 35 0 0 chr4 124439135 124439193 -31190927 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1534 653 168 0 170 chr4 124439417 124439582 -31190538 - B3A SINE B2 -59 139 3 1 1534 1530 53 16 0 chr4 124439733 124439923 -31190197 - B2_Mm1t SINE B2 0 193 1 1 1534 321 261 86 11 chr4 124439925 124440018 -31190102 - B1F SINE Alu -10 139 40 1 1534 690 168 0 18 chr4 124441051 124441160 -31188960 - B1_Mur1 SINE Alu -27 122 16 1 1534 364 241 181 7 chr4 124441204 124441342 -31188778 - RSINE1 SINE B4 -1 164 3 1 1534 1411 86 16 0 chr4 124441407 124441594 -31188526 + B2_Mm2 SINE B2 1 190 -5 1 1534 295 256 205 16 chr4 124441730 124441857 -31188263 - MIRb SINE MIR -91 177 27 1 1534 798 279 4 80 chr4 124441881 124441905 -31188215 + ID SINE ID 2 22 -202 1 1534 2042 195 122 6 chr4 124441905 124442374 -31187746 - RLTR11A2 LTR ERVK -4 523 1 1 1534 798 279 4 80 chr4 124442374 124442587 -31187533 + ID_B1 SINE B4 23 221 -3 1 1534 346 182 72 43 chr4 124442733 124442830 -31187290 + B1_Mm SINE Alu 3 102 -18 1 1534 874 176 0 51 chr4 124442980 124443136 -31186984 - B1_Mur4 SINE Alu 0 150 3 1 1534 327 312 62 14 chr4 124443594 124443740 -31186380 + MER46C DNA MER2_type 22 174 -164 1 1534 372 214 43 0 chr4 124444399 124444469 -31185651 + B3A SINE B2 47 119 -79 1 1534 814 228 111 5 chr4 124444475 124444665 -31185455 + B3 SINE B2 1 210 -6 1 1534 23 0 0 0 chr4 124444668 124444691 -31185429 + AT_rich Low_complexity Low_complexity 1 23 0 1 1534 692 219 0 33 chr4 124444699 124444850 -31185270 + B1_Mur2 SINE Alu 3 148 -1 1 1534 23 33 0 0 chr4 124444860 124444890 -31185230 + AT_rich Low_complexity Low_complexity 1 30 0 1 1534 599 273 6 61 chr4 124444913 124445077 -31185043 + RSINE1 SINE B4 11 165 0 1 1534 235 369 75 45 chr4 124445077 124445104 -31185016 + B3 SINE B2 42 206 -10 1 1534 1389 71 27 5 chr4 124445638 124445822 -31184298 + B2_Mm2 SINE B2 3 190 -5 1 1534 551 239 43 0 chr4 124445832 124445949 -31184171 + B1_Mur1 SINE Alu 1 122 -27 1 1534 274 327 33 100 chr4 124446467 124446647 -31183473 - MIRc SINE MIR -106 170 3 1 1534 796 202 30 35 chr4 124446760 124446929 -31183191 - ID_B1 SINE B4 0 224 57 1 1534 729 247 55 100 chr4 124446941 124447006 -31183114 - B4A SINE B4 -1 291 231 1 1534 1398 65 43 0 chr4 124447006 124447191 -31182929 - B2_Mm2 SINE B2 -1 194 2 1 1534 729 247 55 100 chr4 124447191 124447202 -31182918 - B4A SINE B4 -62 230 223 1 1534 681 13 0 0 chr4 124447202 124447280 -31182840 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 1 1534 1009 65 0 0 chr4 124447282 124447406 -31182714 - B1_Mus1 SINE Alu -6 142 19 1 1534 729 247 55 100 chr4 124447406 124447422 -31182698 - B4A SINE B4 -70 220 82 1 1534 376 231 200 7 chr4 124447468 124447603 -31182517 - RSINE1 SINE B4 -1 164 4 1 1534 563 287 35 87 chr4 124447604 124447833 -31182287 - B4A SINE B4 -60 232 16 1 1534 236 253 13 39 chr4 124447767 124447845 -31182275 - ID4_ SINE ID -3 80 5 1 1534 268 219 146 0 chr4 124447969 124448051 -31182069 + MER119 DNA MER1_type 150 243 -340 1 1534 444 273 27 9 chr4 124448300 124448411 -31181709 + PB1D7 SINE Alu 8 120 0 1 1534 256 293 135 24 chr4 124448411 124448426 -31181694 + B4A SINE B4 93 232 -60 1 1534 424 307 135 6 chr4 124448435 124448614 -31181506 + B3A SINE B2 1 216 0 1 1534 369 0 0 0 chr4 124448629 124448670 -31181450 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1534 366 212 0 29 chr4 124448698 124448766 -31181354 - ID4_ SINE ID -16 67 2 1 1534 198 0 0 0 chr4 124448779 124448801 -31181319 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1534 364 339 17 0 chr4 124448814 124448921 -31181199 - B1F1 SINE Alu 0 120 9 1 1534 323 107 17 51 chr4 124448957 124449016 -31181104 - B1_Mur1 SINE Alu 0 149 93 1 1534 350 243 252 0 chr4 124449060 124449163 -31180957 + RSINE1 SINE B4 21 149 -16 1 1534 392 335 111 32 chr4 124449317 124449725 -31180395 - L2c LINE L2 -254 3133 2689 1 1534 381 224 157 9 chr4 124449917 124450025 -31180095 - B1F1 SINE Alu 0 127 4 1 1534 452 174 106 21 chr4 124450470 124450564 -31179556 - B1_Mur2 SINE Alu 0 149 48 1 1534 247 242 14 57 chr4 124450502 124450572 -31179548 - MT2B LTR ERVL -338 263 197 1 1534 752 61 202 0 chr4 124450581 124450695 -31179425 - B1_Mus1 SINE Alu -1 147 11 1 1534 459 272 63 16 chr4 124450798 124450925 -31179195 - RSINE1 SINE B4 -27 138 6 1 1534 306 73 0 0 chr4 124450998 124451039 -31179081 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 1 1534 1279 20 0 20 chr4 124451039 124451189 -31178931 - B1_Mus2 SINE Alu 0 147 1 1 1534 839 219 55 35 chr4 124451286 124451485 -31178635 + B3 SINE B2 1 203 -13 1 1534 201 108 0 0 chr4 124451487 124451524 -31178596 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1534 810 133 22 0 chr4 124452038 124452173 -31177947 - B1_Mur2 SINE Alu 0 149 12 1 1534 553 190 32 96 chr4 124452173 124452195 -31177925 - ID_B1 SINE B4 0 224 78 1 1534 1317 66 26 32 chr4 124452328 124452517 -31177603 - B2_Mm2 SINE B2 -6 189 2 1 1534 956 246 232 8 chr4 124452517 124453000 -31177120 - L1MC3 LINE L1 -157 7628 7038 1 1534 246 62 0 0 chr4 124453010 124453042 -31177078 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1 1534 283 322 115 29 chr4 124453049 124453257 -31176863 - L1MC3 LINE L1 -925 6860 6635 1 1534 819 218 143 15 chr4 124453279 124453475 -31176645 - ID_B1 SINE B4 -2 222 2 1 1534 569 307 133 24 chr4 124453607 124453984 -31176136 - L1MC3 LINE L1 -1216 6569 6152 1 1534 410 250 0 0 chr4 124453992 124454072 -31176048 - ID4 SINE ID -1 82 3 1 1534 769 148 82 0 chr4 124454097 124454219 -31175901 - B1_Mur2 SINE Alu 0 149 18 1 1534 450 301 54 34 chr4 124454103 124454251 -31175869 - B4 SINE B4 -72 220 70 1 1534 471 257 101 69 chr4 124454918 124455106 -31175014 + B2_Mm2 SINE B2 1 194 -1 1 1534 371 208 26 13 chr4 124455121 124455199 -31174921 + B4 SINE B4 2 80 -212 1 1534 401 262 29 149 chr4 124455349 124455579 -31174541 + B4A SINE B4 40 246 -46 1 1534 207 0 0 0 chr4 124455580 124455603 -31174517 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1534 517 182 40 20 chr4 124455681 124455782 -31174338 + B1_Mur1 SINE Alu 46 148 -1 1 1534 889 226 0 0 chr4 124455908 124456063 -31174057 - B3 SINE B2 -57 159 5 1 1534 440 135 40 101 chr4 124456079 124456178 -31173942 - PB1D9 SINE Alu -13 107 15 1 1534 2042 140 68 9 chr4 124456181 124456520 -31173600 + ORR1B2 LTR MaLR 1 359 -8 1 1534 2121 162 47 6 chr4 124456595 124456974 -31173146 - ORR1C2 LTR MaLR -5 379 1 1 1534 352 274 0 14 chr4 124457292 124457366 -31172754 - ID4 SINE ID -3 80 8 1 1534 849 122 0 15 chr4 124457806 124457939 -31172181 - B1_Mur4 SINE Alu -1 149 19 1 1534 1442 63 16 16 chr4 124458040 124458051 -31172069 - B2_Mm2 SINE B2 0 195 186 1 1534 1324 6 0 53 chr4 124458051 124458241 -31171879 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1534 1442 63 16 16 chr4 124458241 124458423 -31171697 - B2_Mm2 SINE B2 -10 185 2 1 1534 1387 95 26 0 chr4 124458437 124458627 -31171493 - B2_Mm2 SINE B2 0 195 1 1 1534 371 184 0 11 chr4 124459220 124459308 -31170812 + (CCTA)n Simple_repeat Simple_repeat 1 87 0 1 1534 650 246 14 7 chr4 124459310 124459453 -31170667 - B1F1 SINE Alu -3 146 3 1 1534 706 274 4 169 chr4 124460150 124460405 -31169715 - B4 SINE B4 -79 213 1 1 1534 592 221 137 0 chr4 124460408 124460539 -31169581 - B1F2 SINE Alu 0 149 1 1 1534 483 63 0 0 chr4 124460544 124460607 -31169513 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 1 1534 1293 108 21 16 chr4 124462097 124462129 -31167991 - B2_Mm2 SINE B2 -6 189 159 1 1534 180 0 0 0 chr4 124462129 124462149 -31167971 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1534 1293 108 21 16 chr4 124462149 124462304 -31167816 - B2_Mm2 SINE B2 -37 158 1 1 1534 929 171 16 74 chr4 124465043 124465060 -31165060 - B3 SINE B2 -37 179 167 1 1534 339 121 0 0 chr4 124465060 124465118 -31165002 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1534 929 171 16 74 chr4 124465118 124465289 -31164831 - B3 SINE B2 -50 166 2 1 1534 552 100 0 0 chr4 124465373 124465453 -31164667 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1 1534 1734 21 0 0 chr4 124465455 124465647 -31164473 - B2_Mm1a SINE B2 0 193 2 1 1534 947 169 53 21 chr4 124465652 124465840 -31164280 - B2_Mm2 SINE B2 -1 194 1 1 1534 763 240 85 6 chr4 124466553 124466729 -31163391 + B3 SINE B2 5 194 -22 1 1534 820 187 72 67 chr4 124466729 124466924 -31163196 - MTC LTR MaLR -2 419 224 1 1534 931 104 8 0 chr4 124466965 124467099 -31163021 - B1_Mus2 SINE Alu -1 146 12 1 1534 243 191 0 0 chr4 124467261 124467324 -31162796 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 1 1534 280 206 78 0 chr4 124467679 124467756 -31162364 - PB1D9 SINE Alu -8 141 56 1 1534 949 198 64 10 chr4 124467788 124467992 -31162128 - B3 SINE B2 0 216 2 1 1534 219 67 0 0 chr4 124468219 124468249 -31161871 + B1_Mur2 SINE Alu 63 92 -57 1 1534 327 260 80 94 chr4 124468880 124468954 -31161166 + ID_B1 SINE B4 5 213 -11 1 1534 491 165 51 123 chr4 124468954 124469092 -31161028 + B1_Mur1 SINE Alu 11 138 -11 1 1534 566 138 63 38 chr4 124469708 124469825 -31160295 - B1_Mur2 SINE Alu -1 148 25 1 1534 413 274 202 13 chr4 124471207 124471495 -31158625 - MLT1A0 LTR MaLR -23 342 7 1 1534 797 250 191 4 chr4 124471574 124471815 -31158305 + B4A SINE B4 1 286 -6 1 1534 219 146 0 0 chr4 124471982 124472023 -31158097 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1534 1197 68 7 0 chr4 124472027 124472174 -31157946 - B1_Mus1 SINE Alu 0 148 1 1 1534 369 64 0 0 chr4 124473140 124473187 -31156933 - B2_Mm2 SINE B2 -147 48 2 1 1534 237 178 0 0 chr4 124473240 124473285 -31156835 + CT-rich Low_complexity Low_complexity 2 46 0 1 1534 396 192 14 14 chr4 124473325 124473399 -31156721 - ID4 SINE ID -8 75 2 1 1534 725 238 16 163 chr4 124473444 124473695 -31156425 - ID_B1 SINE B4 -6 218 5 1 1534 549 217 75 30 chr4 124473705 124473838 -31156282 - B1F1 SINE Alu -8 141 3 1 1534 33 25 0 0 chr4 124473996 124474036 -31156084 + AT_rich Low_complexity Low_complexity 1 40 0 1 1534 299 179 15 0 chr4 124474059 124474126 -31155994 + (TTA)n Simple_repeat Simple_repeat 2 69 0 1 1534 688 145 108 0 chr4 124474275 124474415 -31155705 + B2_Mm2 SINE B2 10 172 -26 1 1534 192 77 0 0 chr4 124474416 124474442 -31155678 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1 1534 1130 30 0 0 chr4 124474601 124474734 -31155386 - B1_Mus1 SINE Alu -9 139 7 1 1534 542 218 38 152 chr4 124474734 124474812 -31155308 - B4 SINE B4 -75 217 31 1 1534 257 298 30 22 chr4 124475737 124475871 -31154249 + L2 LINE L2 2472 2606 -813 1 1534 189 0 0 0 chr4 124476060 124476081 -31154039 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 1 1534 1435 73 0 30 chr4 124476081 124476279 -31153841 - B2_Mm2 SINE B2 -3 192 1 1 1534 526 285 35 0 chr4 124476311 124476455 -31153665 - B1F SINE Alu 0 149 1 1 1534 312 252 167 38 chr4 124477247 124477379 -31152741 - B1F SINE Alu 0 149 1 1 1534 262 318 0 0 chr4 124477410 124477476 -31152644 + ID4 SINE ID 1 66 -17 1 1534 635 242 109 24 chr4 124477480 124477645 -31152475 - B4A SINE B4 -113 179 1 1 1534 258 191 0 0 chr4 124477651 124477698 -31152422 - B1_Mur1 SINE Alu -6 143 97 1 1534 360 192 44 21 chr4 124477769 124477869 -31152251 + PB1D9 SINE Alu 3 94 -53 1 1534 283 260 35 88 chr4 124477869 124477883 -31152237 + ID_B1 SINE B4 84 191 -33 1 1534 341 210 147 123 chr4 124478766 124478929 -31151191 - B3A SINE B2 -5 193 27 1 1534 1202 61 0 0 chr4 124481336 124481483 -31148637 - B1_Mus1 SINE Alu 0 148 2 1 1534 666 25 0 0 chr4 124481484 124481564 -31148556 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1534 395 271 10 10 chr4 124481566 124481663 -31148457 - PB1D9 SINE Alu -21 99 3 1 1534 657 195 8 0 chr4 124481683 124481801 -31148319 - B1_Mur1 SINE Alu -5 144 26 1 1534 517 335 173 28 chr4 124483294 124483866 -31146254 - L3 LINE CR1 -14 4475 3821 1 1534 287 272 119 26 chr4 124483869 124484015 -31146105 + MER20 DNA MER1_type 2 163 -620 1 1534 605 212 34 0 chr4 124484220 124484338 -31145782 - ID_B1 SINE B4 -4 220 99 1 1534 296 330 22 11 chr4 124484715 124484807 -31145313 - MER58A DNA MER1_type -51 173 81 1 1534 851 143 27 67 chr4 124485100 124485250 -31144870 + B1_Mur2 SINE Alu 1 144 -5 1 1534 539 248 19 0 chr4 124485489 124485594 -31144526 + PB1D9 SINE Alu 1 107 -13 1 1534 1188 68 0 20 chr4 124486270 124486420 -31143700 + B1_Mus1 SINE Alu 2 148 0 1 1534 600 155 87 0 chr4 124486437 124486540 -31143580 + PB1D9 SINE Alu 1 112 -8 1 1534 248 274 0 14 chr4 124488207 124488253 -31141867 + polypyrimidine Low_complexity Low_complexity 30 74 0 1 1534 1355 104 16 10 chr4 124488253 124488447 -31141673 - B2_Mm2 SINE B2 0 195 1 1 1534 248 274 0 14 chr4 124488447 124488474 -31141646 + polypyrimidine Low_complexity Low_complexity 3 29 0 1 1534 320 59 0 19 chr4 124488491 124488543 -31141577 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1534 591 209 19 120 chr4 124488549 124488707 -31141413 - B1_Mur2 SINE Alu -7 142 1 1 1534 431 266 75 38 chr4 124488755 124488888 -31141232 + B1F1 SINE Alu 12 149 0 1 1534 323 274 155 39 chr4 124489637 124489766 -31140354 + MIRb SINE MIR 85 228 -40 1 1534 239 212 38 165 chr4 124489954 124490033 -31140087 + PB1D10 SINE Alu 41 109 -8 1 1534 252 268 28 0 chr4 124490142 124490213 -31139907 - ID4 SINE ID -9 74 2 1 1534 769 216 113 0 chr4 124490231 124490425 -31139695 - B3 SINE B2 0 216 1 1 1534 682 165 35 0 chr4 124490842 124490957 -31139163 + PB1D9 SINE Alu 2 120 0 1 1534 1422 94 0 5 chr4 124491442 124491634 -31138486 - B2_Mm2 SINE B2 -4 191 1 1 1534 568 271 0 60 chr4 124491665 124491814 -31138306 - B1_Mur1 SINE Alu 0 149 10 1 1534 1691 21 0 20 chr4 124491962 124492159 -31137961 - B2_Mm1a SINE B2 0 193 1 1 1534 249 33 0 0 chr4 124492786 124492816 -31137304 + (CTG)n Simple_repeat Simple_repeat 1 30 0 1 1534 561 250 104 72 chr4 124493537 124493787 -31136333 - B4A SINE B4 -32 260 3 1 1534 301 281 41 20 chr4 124494076 124494174 -31135946 - MER2 DNA MER2_type -57 288 189 1 1534 319 255 206 9 chr4 124494184 124494291 -31135829 - RSINE1 SINE B4 -31 134 7 1 1534 328 327 69 0 chr4 124494369 124494470 -31135650 - MER2 DNA MER2_type -234 111 4 1 1534 254 296 41 120 chr4 124495319 124495345 -31134775 - CYRA11_Mm Unknown Y-chromosome -212 405 399 1 1534 1124 185 14 32 chr4 124495345 124495563 -31134557 + URR1B DNA MER1_type 2 215 -10 1 1534 748 151 94 8 chr4 124495653 124495780 -31134340 - B1_Mus2 SINE Alu -9 138 1 1 1534 285 274 41 0 chr4 124495844 124495917 -31134203 - B3A SINE B2 -122 76 1 1 1534 239 316 0 84 chr4 124496011 124496094 -31134026 - ID_B1 SINE B4 0 224 149 1 1534 415 231 106 41 chr4 124496101 124496270 -31133850 - B1_Mur1 SINE Alu 0 149 2 1 1534 436 205 206 30 chr4 124496272 124496403 -31133717 - ID_B1 SINE B4 -69 155 2 1 1534 369 221 160 50 chr4 124496404 124496585 -31133535 + MER58B DNA MER1_type 78 278 -63 1 1534 225 0 0 0 chr4 124496763 124496788 -31133332 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1534 243 88 0 0 chr4 124496802 124496836 -31133284 + (TGG)n Simple_repeat Simple_repeat 3 36 0 1 1534 823 217 0 0 chr4 124496837 124496975 -31133145 - B1_Mur4 SINE Alu -10 140 3 1 1534 384 256 20 134 chr4 124496975 124497003 -31133117 - MT2B LTR ERVL -446 155 145 1 1534 441 207 30 97 chr4 124497027 124497161 -31132959 - B3A SINE B2 -1 197 73 1 1534 666 199 202 11 chr4 124497203 124497381 -31132739 + ID_B1 SINE B4 2 213 -11 1 1534 453 238 0 0 chr4 124498066 124498146 -31131974 + 5S rRNA rRNA 3 82 -39 1 1534 341 251 305 24 chr4 124499226 124499367 -31130753 - B3A SINE B2 -2 214 29 1 1534 1180 55 7 7 chr4 124499616 124499762 -31130358 + B1_Mus2 SINE Alu 2 147 0 1 1534 637 173 18 9 chr4 124500325 124500436 -31129684 + PB1D9 SINE Alu 6 117 -3 1 1534 315 308 44 53 chr4 124500591 124500704 -31129416 + ID_B1 SINE B4 5 116 -108 2 1534 241 279 98 0 chr4 124500671 124500732 -31129388 + AluF_3 SINE Alu 138 204 -107 3 1534 225 284 8 134 chr4 124500856 124500990 -31129130 - PB1D10 SINE Alu 0 117 1 4 1534 518 292 74 7 chr4 124501183 124501331 -31128789 - RSINE1 SINE B4 0 165 8 5 1534 393 22 0 0 chr4 124501643 124501689 -31128431 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 6 1534 309 238 63 90 chr4 124501689 124501779 -31128341 - L1MEg LINE L1 -4133 1951 1859 7 1534 778 194 21 7 chr4 124501779 124501924 -31128196 - B1_Mus1 SINE Alu 0 148 2 8 1534 309 238 63 90 chr4 124501924 124501944 -31128176 - L1MEg LINE L1 -4226 1858 1844 7 1534 240 163 0 0 chr4 124502673 124502716 -31127404 + (CGTG)n Simple_repeat Simple_repeat 3 45 0 9 1534 283 277 119 0 chr4 124502820 124502921 -31127199 - B4A SINE B4 -44 248 136 1 1534 1048 57 22 0 chr4 124503038 124503219 -31126901 - B2_Mm1t SINE B2 0 193 1 1 1534 198 0 0 0 chr4 124503346 124503368 -31126752 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 1534 552 154 175 24 chr4 124503368 124503484 -31126636 - B1_Mur3 SINE Alu -12 137 1 1 1534 1123 202 10 19 chr4 124503733 124503940 -31126180 - B3 SINE B2 -4 212 8 1 1534 527 184 9 67 chr4 124504091 124504196 -31125924 - RSINE1 SINE B4 -64 101 3 1 1534 185 0 0 39 chr4 124504442 124504468 -31125652 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1534 596 168 176 0 chr4 124504474 124504599 -31125521 - B1_Mus2 SINE Alu 0 147 1 1 1534 441 248 109 7 chr4 124504895 124505033 -31125087 + RSINE1 SINE B4 5 156 -9 1 1534 960 118 44 11 chr4 124505247 124505427 -31124693 - Lx4A LINE L1 0 7058 6873 1 1534 1248 48 7 0 chr4 124505449 124505596 -31124524 + B1_Mus1 SINE Alu 1 148 0 2 1534 182 65 65 0 chr4 124505715 124505746 -31124374 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2 1534 222 308 152 11 chr4 124505757 124505849 -31124271 - MIR SINE MIR -140 122 18 2 1534 263 314 129 43 chr4 124505862 124506025 -31124095 + MIRb SINE MIR 4 180 -96 2 1534 378 0 0 0 chr4 124506133 124506175 -31123945 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1534 738 254 57 18 chr4 124506177 124506333 -31123787 - MT2A LTR ERVL -120 481 194 2 1534 910 114 158 23 chr4 124506333 124506504 -31123616 + B2_Mm2 SINE B2 1 194 -1 2 1534 738 264 133 47 chr4 124506504 124506677 -31123443 - MT2A LTR ERVL -340 193 1 2 1534 1178 184 15 0 chr4 124507487 124507693 -31122427 + B3 SINE B2 3 211 -5 2 1534 318 289 23 38 chr4 124507832 124507965 -31122155 + ID_B1 SINE B4 86 216 -8 2 1534 201 39 0 0 chr4 124508087 124508113 -31122007 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1534 1241 28 0 7 chr4 124508113 124508251 -31121869 - B1_Mus1 SINE Alu -8 140 3 3 1534 21 0 0 0 chr4 124508304 124508325 -31121795 + AT_rich Low_complexity Low_complexity 1 21 0 3 1534 441 276 65 18 chr4 124509044 124509166 -31120954 - PB1D7 SINE Alu 0 127 1 3 1534 519 17 0 0 chr4 124509422 124509482 -31120638 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1534 263 303 13 13 chr4 124509515 124509592 -31120528 - ID4_ SINE ID -5 78 2 3 1534 359 323 3 10 chr4 124509680 124509798 -31120322 + B1F1 SINE Alu 1 119 -1 3 1534 212 318 16 0 chr4 124509827 124509890 -31120230 + B1_Mus1 SINE Alu 5 68 -80 3 1534 210 91 18 35 chr4 124509900 124509957 -31120163 + (CAAAAA)n Simple_repeat Simple_repeat 6 61 0 3 1534 256 308 47 55 chr4 124510004 124510131 -31119989 + RSINE1 SINE B4 2 127 -38 3 1534 211 308 261 17 chr4 124510419 124510538 -31119582 - RSINE1 SINE B4 -6 159 12 3 1534 1145 82 7 0 chr4 124511326 124511472 -31118648 + B1_Mus1 SINE Alu 2 148 0 4 1534 324 102 0 0 chr4 124511472 124511521 -31118599 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1534 372 322 116 0 chr4 124511537 124511658 -31118462 + B1F2 SINE Alu 15 149 0 4 1534 261 273 111 0 chr4 124511692 124511791 -31118329 - PB1D7 SINE Alu -6 114 5 4 1534 195 42 0 0 chr4 124511827 124511851 -31118269 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 4 1534 297 282 104 28 chr4 124512198 124512304 -31117816 - PB1D7 SINE Alu -1 119 3 4 1534 882 168 15 0 chr4 124512352 124512489 -31117631 + B1_Mus1 SINE Alu 1 139 -9 4 1534 191 36 0 35 chr4 124512489 124512518 -31117602 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1534 507 201 179 0 chr4 124512778 124512912 -31117208 - B3 SINE B2 -56 160 3 4 1534 944 239 11 0 chr4 124513240 124513428 -31116692 - B4A SINE B4 -20 272 83 4 1534 328 295 13 0 chr4 124513470 124513548 -31116572 - B4A SINE B4 -213 79 1 4 1534 301 307 110 34 chr4 124513548 124513666 -31116454 - ID_B1 SINE B4 -2 222 96 5 1534 354 297 23 9 chr4 124513694 124513826 -31116294 - PB1D9 SINE Alu -10 140 2 5 1534 512 248 127 8 chr4 124514062 124514196 -31115924 - B3 SINE B2 0 216 67 5 1534 728 93 0 70 chr4 124514333 124514448 -31115672 - B2_Mm2 SINE B2 -88 107 1 5 1534 396 336 100 0 chr4 124514458 124514598 -31115522 - MER58B DNA MER1_type -25 316 163 5 1534 393 230 96 17 chr4 124514657 124514772 -31115348 + PB1 SINE Alu 2 125 -2 5 1534 719 174 0 7 chr4 124516238 124516388 -31113732 + CT-rich Low_complexity Low_complexity 1 149 0 5 1534 424 208 26 0 chr4 124516388 124516465 -31113655 - ID4 SINE ID -2 81 3 5 1534 263 242 65 112 chr4 124516642 124516749 -31113371 + Charlie12 DNA MER1_type 1 102 -2771 5 1534 180 0 0 0 chr4 124517170 124517190 -31112930 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1534 821 182 42 0 chr4 124517190 124517333 -31112787 - B1_Mur3 SINE Alu 0 149 1 6 1534 362 239 57 0 chr4 124517380 124517468 -31112652 - B3 SINE B2 0 216 124 6 1534 210 229 104 0 chr4 124517842 124517890 -31112230 + PB1D10 SINE Alu 50 102 -15 6 1534 350 91 0 18 chr4 124518104 124518160 -31111960 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 6 1534 771 140 84 49 chr4 124518168 124518311 -31111809 + B1_Mur3 SINE Alu 1 148 -1 6 191 1153 175 62 0 chr4 124518365 124518559 -31111561 - B3 SINE B2 -10 206 1 6 1535 237 122 61 10 chr4 124518622 124518652 -31111468 + T-rich Low_complexity Low_complexity 76 108 0 6 1535 1178 55 0 7 chr4 124518652 124518800 -31111320 - B1_Mus2 SINE Alu 0 147 1 6 1535 237 122 61 10 chr4 124518800 124518868 -31111252 + T-rich Low_complexity Low_complexity 6 75 0 6 1535 347 221 34 23 chr4 124518871 124518959 -31111161 - ID_B1 SINE B4 -4 220 132 6 1535 407 245 22 36 chr4 124519127 124519239 -31110881 + PB1D10 SINE Alu 9 117 0 7 1535 356 218 38 13 chr4 124520176 124520255 -31109865 - ID4_ SINE ID 0 83 3 7 1535 350 267 28 9 chr4 124520296 124520402 -31109718 + B1F SINE Alu 1 108 -41 7 1535 834 128 96 15 chr4 124520441 124520576 -31109544 + B1_Mur4 SINE Alu 2 147 -3 7 1535 216 86 0 0 chr4 124521279 124521314 -31108806 + (C)n Simple_repeat Simple_repeat 1 35 0 7 1535 222 105 0 0 chr4 124521993 124522031 -31108089 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1535 24 0 0 0 chr4 124524747 124524771 -31105349 + AT_rich Low_complexity Low_complexity 1 24 0 7 1535 22 35 0 0 chr4 124528414 124528443 -31101677 + GC_rich Low_complexity Low_complexity 1 29 0 7 1535 705 259 52 33 chr4 124529524 124529567 -31100553 - B3 SINE B2 0 216 166 7 1535 396 0 0 0 chr4 124529567 124529611 -31100509 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1535 705 259 52 33 chr4 124529611 124529779 -31100341 - B3 SINE B2 -51 165 2 7 1535 551 228 150 0 chr4 124529884 124530011 -31100109 + B1_Mus2 SINE Alu 2 147 0 8 1535 290 188 142 47 chr4 124530189 124530295 -31099825 - PB1D7 SINE Alu -3 117 2 8 1535 862 137 13 52 chr4 124531336 124531490 -31098630 + B1_Mur4 SINE Alu 3 150 0 8 1535 197 239 194 0 chr4 124533343 124533410 -31096710 + L2c LINE L2 3286 3365 -22 8 1535 469 192 82 182 chr4 124534936 124535017 -31095103 - B1_Mur2 SINE Alu -5 144 65 8 1535 1072 58 65 0 chr4 124535017 124535155 -31094965 + B1_Mm SINE Alu 1 147 0 8 1535 469 192 82 182 chr4 124535155 124535232 -31094888 - B1_Mur2 SINE Alu -85 64 2 8 1535 407 294 153 18 chr4 124535386 124535549 -31094571 + B3A SINE B2 9 193 -5 8 1535 323 291 0 35 chr4 124535600 124535714 -31094406 + ID_B1 SINE B4 87 196 -28 8 1535 442 255 75 25 chr4 124535730 124535891 -31094229 - MLT1A LTR MaLR -45 329 161 8 1535 638 210 146 21 chr4 124537036 124537222 -31092898 + B3 SINE B2 1 198 0 8 1535 457 254 92 8 chr4 124537398 124537517 -31092603 + ID_B1 SINE B4 64 192 -32 9 1535 792 145 0 0 chr4 124537410 124537527 -31092593 + B1_Mus1 SINE Alu 7 123 -25 9 1535 244 283 9 66 chr4 124537444 124537550 -31092570 + RLTR25B LTR ERVK 441 540 -488 9 1535 227 258 207 8 chr4 124538184 124538305 -31091815 - B1F SINE Alu -1 148 4 9 1535 208 91 22 22 chr4 124539183 124539228 -31090892 + (CGG)n Simple_repeat Simple_repeat 2 46 0 9 1535 22 0 0 0 chr4 124539228 124539250 -31090870 + GC_rich Low_complexity Low_complexity 1 22 0 9 1535 22 0 0 0 chr4 124539387 124539409 -31090711 + GC_rich Low_complexity Low_complexity 1 22 0 9 1535 331 344 58 52 chr4 124540058 124540074 -31090046 - B4 SINE B4 -65 227 179 9 1535 532 252 25 0 chr4 124540074 124540193 -31089927 - B1F1 SINE Alu -25 124 3 9 1535 331 344 58 52 chr4 124540193 124540230 -31089890 - B4 SINE B4 -65 178 55 9 1535 335 310 60 0 chr4 124540259 124540375 -31089745 - B1F1 SINE Alu -26 123 1 9 1535 390 21 0 0 chr4 124540475 124540522 -31089598 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 1 1535 1140 65 0 0 chr4 124540522 124540661 -31089459 - B1_Mus2 SINE Alu -8 139 1 1 1535 635 319 0 12 chr4 124541169 124541334 -31088786 + RSINE1 SINE B4 3 165 0 1 1535 1214 61 0 0 chr4 124541390 124541537 -31088583 + B1_Mus2 SINE Alu 1 147 0 1 1535 441 95 0 0 chr4 124541539 124541602 -31088518 + (GAA)n Simple_repeat Simple_repeat 2 64 0 1 1535 301 309 19 58 chr4 124541641 124541744 -31088376 + ID_B1 SINE B4 78 176 -48 1 1535 408 273 18 35 chr4 124541655 124541769 -31088351 + PB1D10 SINE Alu 5 116 -1 1 1535 2170 122 6 55 chr4 124541769 124542115 -31088005 + ORR1A4 LTR MaLR 1 329 0 1 1535 927 148 227 6 chr4 124542143 124542319 -31087801 + B3 SINE B2 2 216 0 1 1535 345 141 442 12 chr4 124542339 124542425 -31087695 + URR1A DNA MER1_type 1 123 -103 1 1535 1194 101 0 0 chr4 124542426 124542584 -31087536 + B2_Mm2 SINE B2 1 158 -37 1 1535 414 57 0 0 chr4 124542585 124542638 -31087482 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1 1535 744 120 8 0 chr4 124542647 124542764 -31087356 + URR1A DNA MER1_type 108 225 -1 1 1535 1443 12 116 0 chr4 124542864 124543036 -31087084 + B2_Mm1t SINE B2 2 193 0 1 1535 541 248 45 0 chr4 124543062 124543195 -31086925 + RSINE1 SINE B4 27 165 0 1 1535 825 256 0 28 chr4 124543243 124543460 -31086660 + B3 SINE B2 1 211 -5 1 1535 673 211 11 75 chr4 124543738 124543815 -31086305 + ID SINE ID 6 71 -153 1 1535 417 230 0 137 chr4 124543815 124543946 -31086174 + PB1D10 SINE Alu 3 115 -2 1 1535 424 265 158 11 chr4 124543970 124544153 -31085967 + B3 SINE B2 7 216 0 1 1535 866 153 0 22 chr4 124544164 124544298 -31085822 - B1_Mur1 SINE Alu -5 144 14 1 1535 1299 34 0 0 chr4 124544298 124544445 -31085675 + B1_Mus1 SINE Alu 2 148 0 1 1535 195 42 0 0 chr4 124544447 124544471 -31085649 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1535 1502 42 0 123 chr4 124544685 124544905 -31085215 + B2_Mm1a SINE B2 1 193 0 1 1535 232 222 152 0 chr4 124545120 124545219 -31084901 + PB1D10 SINE Alu 1 114 -3 1 1535 1289 96 31 21 chr4 124545289 124545480 -31084640 + B2_Mm2 SINE B2 3 195 0 1 1535 762 226 12 47 chr4 124545486 124545644 -31084476 + B2_Mm2 SINE B2 5 158 -37 1 1535 237 65 0 0 chr4 124545644 124545675 -31084445 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1535 762 226 12 47 chr4 124545675 124545688 -31084432 + B2_Mm2 SINE B2 159 170 -25 1 1535 186 273 0 0 chr4 124546317 124546361 -31083759 + MIRc SINE MIR 166 209 -59 1 1535 525 190 0 0 chr4 124546465 124546644 -31083476 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1535 840 117 0 0 chr4 124546681 124546844 -31083276 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1535 339 226 11 77 chr4 124546844 124546928 -31083192 - RSINE1 SINE B4 -76 89 11 1 1535 474 248 35 17 chr4 124546940 124547055 -31083065 - PB1D10 SINE Alu 0 117 1 1 1535 270 266 38 0 chr4 124547122 124547201 -31082919 - ID4 SINE ID 0 83 2 1 1535 293 364 36 0 chr4 124547201 124547300 -31082820 - L2b LINE L2 -13 3362 3260 1 1535 288 0 0 0 chr4 124547551 124547583 -31082537 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1535 898 182 0 0 chr4 124547681 124547824 -31082296 + B1_Mur4 SINE Alu 4 146 -4 1 1535 1089 67 15 0 chr4 124547856 124547991 -31082129 + B1_Mus2 SINE Alu 2 138 -9 1 1535 222 37 0 0 chr4 124547991 124548018 -31082102 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1535 674 33 22 0 chr4 124548032 124548124 -31081996 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 1 1535 616 236 155 0 chr4 124548131 124548279 -31081841 - B3A SINE B2 -26 172 2 1 1535 311 322 59 7 chr4 124548371 124548524 -31081596 + MLT1F2 LTR MaLR 1 161 -399 1 1535 512 211 39 0 chr4 124548692 124548796 -31081324 + ID_B1 SINE B4 65 172 -52 1 1535 553 263 22 36 chr4 124548795 124548918 -31081202 + B1F2 SINE Alu 14 139 -10 1 1535 234 0 0 0 chr4 124548918 124548944 -31081176 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1535 553 263 22 36 chr4 124548944 124548958 -31081162 + B1F2 SINE Alu 140 149 0 1 1535 331 340 88 0 chr4 124549061 124549208 -31080912 + MLT1E1A LTR MaLR 512 671 -9 1 1535 450 259 75 33 chr4 124549331 124549451 -31080669 - ID_B1 SINE B4 -20 204 80 1 1535 1655 42 0 0 chr4 124549467 124549660 -31080460 + B2_Mm1a SINE B2 1 193 0 1 1535 636 290 89 0 chr4 124549668 124549837 -31080283 - B3 SINE B2 0 216 33 1 1535 1181 68 7 0 chr4 124549840 124549987 -31080133 + B1_Mus1 SINE Alu 1 148 0 1 1535 180 0 0 0 chr4 124549988 124550008 -31080112 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1535 225 209 0 0 chr4 124550018 124550061 -31080059 - B3A SINE B2 -153 45 3 1 1535 584 221 149 19 chr4 124550105 124550266 -31079854 - B3A SINE B2 -16 182 1 1 1535 1109 89 0 7 chr4 124550801 124550948 -31079172 + B1_Mus2 SINE Alu 2 147 0 1 1535 1359 104 0 20 chr4 124551019 124551216 -31078904 + B2_Mm2 SINE B2 1 193 -2 1 1535 926 227 27 80 chr4 124551269 124551494 -31078626 - B3 SINE B2 -2 214 2 1 1535 404 304 0 25 chr4 124551503 124551621 -31078499 - PB1D10 SINE Alu -2 115 1 1 1535 213 39 0 0 chr4 124551842 124551868 -31078252 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1 1535 694 230 139 0 chr4 124551983 124552170 -31077950 - ID_B1 SINE B4 -10 214 2 1 1535 243 0 0 0 chr4 124552352 124552379 -31077741 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1535 2326 125 10 62 chr4 124552389 124552774 -31077346 + ORR1B2 LTR MaLR 1 365 -2 1 1535 280 89 17 35 chr4 124552776 124552834 -31077286 + (TATG)n Simple_repeat Simple_repeat 1 57 0 1 1535 508 283 107 27 chr4 124552840 124552989 -31077131 - RSINE1 SINE B4 -2 163 3 1 1535 1175 68 7 0 chr4 124553005 124553151 -31076969 + B1_Mus1 SINE Alu 2 148 0 1 1535 22 70 0 0 chr4 124553151 124553194 -31076926 + AT_rich Low_complexity Low_complexity 1 43 0 1 1535 315 357 154 33 chr4 124553315 124553712 -31076408 + MamRep605 Unknown Unknown 399 843 -33 1 1535 1400 90 16 0 chr4 124553892 124554081 -31076039 + B2_Mm1a SINE B2 1 192 -1 1 1535 726 70 281 0 chr4 124554094 124554208 -31075912 + B1_Mus2 SINE Alu 2 147 0 1 1535 1229 126 16 0 chr4 124554227 124554417 -31075703 + B2_Mm1t SINE B2 1 193 0 1 1535 606 277 7 0 chr4 124554466 124554603 -31075517 + ID_B1 SINE B4 79 216 -8 1 1535 324 0 0 0 chr4 124554605 124554641 -31075479 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1535 1321 83 28 0 chr4 124555545 124555725 -31074395 + B2_Mm2 SINE B2 3 187 -8 1 1535 1276 34 0 0 chr4 124555734 124555880 -31074240 + B1_Mus2 SINE Alu 2 147 0 1 1535 2070 188 51 18 chr4 124556066 124556516 -31073604 - RMER6C LTR ERVK 0 690 226 1 1535 477 50 0 0 chr4 124557554 124557614 -31072506 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1535 306 0 0 0 chr4 124557614 124557647 -31072473 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1535 459 0 0 0 chr4 124558458 124558509 -31071611 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1535 32 26 0 0 chr4 124560509 124560548 -31069572 + AT_rich Low_complexity Low_complexity 1 39 0 1 1535 396 322 106 41 chr4 124560675 124560921 -31069199 + MLT1D LTR MaLR 27 288 -217 1 1535 198 0 0 0 chr4 124561353 124561375 -31068745 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1535 374 38 0 19 chr4 124561500 124561553 -31068567 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 1 1535 300 188 48 48 chr4 124561579 124561663 -31068457 - RSINE1 SINE B4 -79 86 3 1 1535 242 244 0 143 chr4 124562081 124562172 -31067948 + MT2B2 LTR ERVL 167 244 -340 1 1535 654 205 0 0 chr4 124562097 124562219 -31067901 + B1F SINE Alu 15 136 -13 1 1535 1164 61 0 7 chr4 124562233 124562381 -31067739 - B1_Mus1 SINE Alu 0 148 2 1 1535 393 252 78 8 chr4 124562425 124562553 -31067567 + B1F SINE Alu 13 149 0 1 1535 291 214 0 0 chr4 124562561 124562617 -31067503 + BC1_Mm scRNA scRNA 24 79 -73 1 1535 280 221 42 42 chr4 124562617 124562632 -31067488 + ID_B1 SINE B4 25 95 -129 1 1535 185 308 115 0 chr4 124563800 124563904 -31066216 - MIRb SINE MIR -146 122 7 1 1535 1126 75 7 0 chr4 124564032 124564178 -31065942 + B1_Mus1 SINE Alu 2 148 0 1 1535 384 22 0 0 chr4 124564178 124564223 -31065897 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1535 297 100 0 0 chr4 124564404 124564454 -31065666 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1535 204 40 0 0 chr4 124564454 124564479 -31065641 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1535 490 275 30 0 chr4 124564484 124564615 -31065505 - RSINE1 SINE B4 -20 145 11 1 1535 189 338 13 25 chr4 124564644 124564723 -31065397 - L2c LINE L2 -42 3345 3268 1 1535 505 261 69 51 chr4 124564814 124565153 -31064967 - MTE2a LTR MaLR -17 402 1 1 1535 903 246 85 46 chr4 124565444 124565704 -31064416 - MTE2a LTR MaLR 0 379 110 1 1535 710 175 16 0 chr4 124565699 124565825 -31064295 + B1_Mur2 SINE Alu 21 148 -1 1 1535 444 82 0 0 chr4 124566442 124566503 -31063617 + (GGATG)n Simple_repeat Simple_repeat 4 64 0 1 1535 500 261 37 7 chr4 124566503 124566638 -31063482 + ID_B1 SINE B4 86 224 0 1 1535 457 189 92 69 chr4 124566737 124566752 -31063368 + B1_Mur2 SINE Alu 16 30 -119 1 1535 857 169 186 21 chr4 124566752 124566945 -31063175 - URR1B DNA MER1_type 0 225 1 1 1535 457 189 92 69 chr4 124566945 124567060 -31063060 + B1_Mur2 SINE Alu 31 149 0 1 1535 183 327 36 0 chr4 124567174 124567229 -31062891 - L2c LINE L2 -1409 2010 1954 1 1535 886 223 15 39 chr4 124567328 124567428 -31062692 + ID_B1 SINE B4 6 104 -120 1 1535 3242 46 8 5 chr4 124567428 124567823 -31062297 - MTA_Mm LTR MaLR 0 396 1 1 1535 886 223 15 39 chr4 124567823 124567927 -31062193 + ID_B1 SINE B4 105 205 -19 1 1535 891 28 0 0 chr4 124567935 124568041 -31062079 + (GA)n Simple_repeat Simple_repeat 1 106 0 2 1535 678 266 35 6 chr4 124568235 124568409 -31061711 - MER97c DNA MER1_type? -911 179 1 2 1535 1012 123 0 14 chr4 124569209 124569357 -31060763 - B1_Mus1 SINE Alu 0 148 3 2 1535 933 276 31 0 chr4 124569798 124570052 -31060068 + B4A SINE B4 8 269 -23 2 1535 405 287 0 134 chr4 124570125 124570195 -31059925 + ID_B1 SINE B4 86 144 -80 2 1535 1238 48 0 0 chr4 124570195 124570341 -31059779 + B1_Mm SINE Alu 2 147 0 2 1535 405 287 0 134 chr4 124570341 124570419 -31059701 + ID_B1 SINE B4 145 214 -10 2 1535 199 261 0 0 chr4 124570571 124570617 -31059503 - MIRc SINE MIR -144 124 79 2 1535 401 54 18 0 chr4 124570618 124570674 -31059446 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1535 226 194 0 29 chr4 124570843 124570912 -31059208 + CT-rich Low_complexity Low_complexity 3 69 0 2 1535 186 269 73 15 chr4 124571079 124571147 -31058973 + MIRc SINE MIR 80 151 -117 2 1535 325 326 162 40 chr4 124573193 124573391 -31056729 + ID_B1 SINE B4 2 223 -1 2 1535 762 204 0 39 chr4 124573396 124573549 -31056571 + B1_Mur3 SINE Alu 2 148 -1 2 1535 1293 194 0 14 chr4 124573714 124573933 -31056187 - B3 SINE B2 0 216 1 2 1535 259 244 62 25 chr4 124573933 124574013 -31056107 - PB1D10 SINE Alu -13 104 22 2 1535 428 291 98 14 chr4 124573944 124574087 -31056033 - ID_B1 SINE B4 -53 171 17 2 1535 736 239 0 0 chr4 124574110 124574252 -31055868 - B1F2 SINE Alu -6 143 2 2 1535 948 176 21 42 chr4 124574273 124574463 -31055657 + B2_Mm2 SINE B2 1 186 -9 2 1535 299 220 94 57 chr4 124574467 124574573 -31055547 - B3 SINE B2 0 216 107 2 1535 372 43 0 0 chr4 124574638 124574684 -31055436 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 2 1535 313 211 115 26 chr4 124574684 124574762 -31055358 - PB1D7 SINE Alu -19 101 17 2 1535 725 224 7 47 chr4 124574790 124574940 -31055180 - B1_Mur3 SINE Alu -5 144 1 2 1535 672 24 0 0 chr4 124575078 124575160 -31054960 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1535 309 89 0 0 chr4 124575350 124575395 -31054725 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1535 338 289 0 0 chr4 124575510 124575593 -31054527 - B4A SINE B4 -208 84 2 2 1535 256 324 48 19 chr4 124575851 124575955 -31054165 - L1M6 LINE L1 -6123 373 267 2 1535 648 258 162 8 chr4 124576459 124576725 -31053395 - L1M3 LINE L1 -1878 4262 3956 2 1535 314 210 65 0 chr4 124577602 124577664 -31052456 + MT2B LTR ERVL 179 244 -357 2 1535 302 188 130 111 chr4 124577664 124577703 -31052417 + PB1D9 SINE Alu 25 119 -1 2 1535 265 189 33 22 chr4 124577726 124577802 -31052318 - PB1 SINE Alu 0 127 41 2 1535 415 236 0 217 chr4 124577833 124578022 -31052098 - B1F2 SINE Alu 0 149 2 2 1535 186 280 0 0 chr4 124578113 124578153 -31051967 + T-rich Low_complexity Low_complexity 38 77 0 2 1535 1096 50 58 0 chr4 124578153 124578292 -31051828 - B1_Mus2 SINE Alu 0 147 1 2 1535 186 280 0 0 chr4 124578292 124578306 -31051814 + T-rich Low_complexity Low_complexity 24 37 0 2 1535 1489 82 0 15 chr4 124578306 124578504 -31051616 - B2_Mm2 SINE B2 0 195 1 2 1535 186 280 0 0 chr4 124578504 124578523 -31051597 + T-rich Low_complexity Low_complexity 5 23 0 2 1535 281 237 182 20 chr4 124578532 124578631 -31051489 - PB1D10 SINE Alu -2 115 1 2 1535 401 311 84 44 chr4 124578647 124578896 -31051224 - MER63D DNA AcHobo -284 777 519 2 1535 619 123 158 0 chr4 124580070 124580184 -31049936 + B1_Mur4 SINE Alu 19 150 0 2 1535 296 224 94 0 chr4 124580562 124580647 -31049473 + PB1D7 SINE Alu 28 120 0 2 1535 388 255 57 90 chr4 124580588 124580765 -31049355 + MT2B2 LTR ERVL 95 265 -319 2 1535 492 262 77 66 chr4 124580619 124580656 -31049464 + B4 SINE B4 45 177 -115 2 1535 1084 49 0 0 chr4 124580656 124580799 -31049321 + B1_Mus2 SINE Alu 5 147 0 2 1535 492 262 77 66 chr4 124580799 124580815 -31049305 + B4 SINE B4 178 242 -50 2 1535 258 156 0 0 chr4 124580817 124580862 -31049258 + GA-rich Low_complexity Low_complexity 6 50 0 2 1535 1439 64 37 0 chr4 124580862 124581050 -31049070 + B2_Mm2 SINE B2 1 195 0 2 1535 375 123 12 24 chr4 124581053 124581136 -31048984 + GA-rich Low_complexity Low_complexity 4 85 0 2 1535 416 299 106 51 chr4 124581154 124581485 -31048635 - LTR85a LTR Gypsy? -353 349 1 2 1535 671 222 30 0 chr4 124582321 124582456 -31047664 + ID_B1 SINE B4 84 222 -2 2 1535 241 375 56 22 chr4 124582460 124582640 -31047480 + MIRb SINE MIR 64 249 -19 2 1535 1122 102 108 0 chr4 124582750 124582926 -31047194 + B2_Mm2 SINE B2 1 195 0 2 1535 185 0 40 0 chr4 124583130 124583155 -31046965 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1535 443 262 0 0 chr4 124583431 124583534 -31046586 + ID_B1 SINE B4 92 194 -30 2 1535 527 187 19 0 chr4 124584309 124584416 -31045704 + B1_Mur4 SINE Alu 34 142 -8 2 1535 342 0 0 0 chr4 124584791 124584829 -31045291 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1535 498 155 87 10 chr4 124584832 124584936 -31045184 - ORR1D1 LTR MaLR -258 116 5 2 1535 515 351 42 48 chr4 124584957 124585310 -31044810 - ORR1E LTR MaLR -5 354 4 2 1535 348 231 26 0 chr4 124585334 124585412 -31044708 + B1_Mur2 SINE Alu 70 149 0 2 1535 421 153 14 66 chr4 124585733 124586024 -31044096 + CT-rich Low_complexity Low_complexity 1 275 0 2 1535 214 236 0 65 chr4 124586026 124586103 -31044017 + C-rich Low_complexity Low_complexity 1 72 0 2 1535 388 112 0 96 chr4 124586106 124586303 -31043817 + CT-rich Low_complexity Low_complexity 1 178 0 2 1535 295 359 19 0 chr4 124586799 124586902 -31043218 + L2 LINE L2 2806 2910 -509 2 1535 640 236 39 45 chr4 124587204 124587359 -31042761 + RSINE1 SINE B4 11 164 -1 2 1535 262 333 130 27 chr4 124587359 124587388 -31042732 + B3 SINE B2 10 212 -4 2 1535 513 0 0 0 chr4 124587403 124587460 -31042660 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 2 1535 970 70 20 0 chr4 124587464 124587615 -31042505 - B2_Mm2 SINE B2 -47 169 3 2 1535 777 67 0 0 chr4 124587631 124587736 -31042384 - B2_Mm2 SINE B2 -41 154 50 2 1535 1145 89 0 0 chr4 124587736 124587882 -31042238 - B1_Mus2 SINE Alu 0 147 2 2 1535 1360 103 11 0 chr4 124587892 124588077 -31042043 - B2_Mm1t SINE B2 -6 187 1 2 1535 1061 89 0 58 chr4 124588104 124588259 -31041861 + B1_Mus1 SINE Alu 3 148 0 2 1535 280 239 81 121 chr4 124588289 124588319 -31041801 + MT2B LTR ERVL 139 218 -383 2 1535 693 190 65 7 chr4 124588319 124588382 -31041738 + B1_Mus2 SINE Alu 1 63 -84 2 1535 2150 99 76 0 chr4 124588382 124588686 -31041434 - ORR1A2 LTR MaLR 0 327 1 2 1535 280 239 81 121 chr4 124588686 124588716 -31041404 + MT2B LTR ERVL 219 257 -344 2 1535 693 190 65 7 chr4 124588716 124588760 -31041360 + B1_Mus2 SINE Alu 64 145 -2 2 1535 247 186 0 0 chr4 124588818 124588861 -31041259 + RSINE1 SINE B4 72 114 -51 2 1535 225 0 0 0 chr4 124588861 124588886 -31041234 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1535 23 54 0 0 chr4 124588886 124588923 -31041197 + AT_rich Low_complexity Low_complexity 1 37 0 2 1535 339 25 0 0 chr4 124588969 124589009 -31041111 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1535 1091 58 58 0 chr4 124589009 124589148 -31040972 - B1_Mus2 SINE Alu 0 147 1 2 1535 259 25 24 24 chr4 124591830 124591871 -31038249 + (TGG)n Simple_repeat Simple_repeat 1 41 0 2 1535 525 198 261 0 chr4 124596368 124596525 -31033595 - B3A SINE B2 0 198 1 2 1535 408 258 31 0 chr4 124598013 124598110 -31032010 - ID_B1 SINE B4 -38 186 87 2 1535 207 304 156 0 chr4 124598667 124598802 -31031318 - MIR SINE MIR -92 170 15 2 1535 495 198 21 0 chr4 124599044 124599140 -31030980 + B3A SINE B2 1 98 -100 2 1535 277 192 82 0 chr4 124599433 124599506 -31030614 + PB1D10 SINE Alu 32 110 -7 2 1535 350 216 34 45 chr4 124599642 124599745 -31030375 - B4A SINE B4 -18 274 173 2 1535 840 249 39 10 chr4 124600691 124600894 -31029226 - B3 SINE B2 -7 209 1 2 1535 239 133 0 22 chr4 124600995 124601041 -31029079 + CT-rich Low_complexity Low_complexity 1 45 0 2 1535 572 265 22 14 chr4 124601489 124601627 -31028493 - B1F1 SINE Alu -1 148 10 2 1535 766 249 90 20 chr4 124601715 124601916 -31028204 - B3 SINE B2 0 216 2 2 1535 207 100 0 0 chr4 124601982 124602012 -31028108 + (CGTG)n Simple_repeat Simple_repeat 4 33 0 2 1535 610 193 0 16 chr4 124602013 124602134 -31027986 - ID_B1 SINE B4 -28 196 78 2 1535 850 223 0 0 chr4 124602340 124602488 -31027632 + B1_Mur2 SINE Alu 2 149 0 2 1535 273 57 0 0 chr4 124602490 124602525 -31027595 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 1535 1041 49 0 27 chr4 124602780 124602926 -31027194 - B1_Mus1 SINE Alu 0 148 7 2 1535 431 186 40 103 chr4 124602819 124602945 -31027175 - MT2B LTR ERVL -337 264 147 2 1535 405 290 57 0 chr4 124603001 124603125 -31026995 + RSINE1 SINE B4 2 132 -33 2 1535 269 298 106 0 chr4 124603505 124603599 -31026521 + PB1D10 SINE Alu 3 106 -11 2 1535 637 248 185 28 chr4 124603609 124603858 -31026262 + B4A SINE B4 2 289 -3 2 1535 378 276 10 30 chr4 124604221 124604322 -31025798 + RMER12 LTR ERVK 771 869 -453 2 1535 326 246 177 31 chr4 124604656 124604786 -31025334 + MER68 LTR ERVL 50 198 -365 2 1535 634 231 43 110 chr4 124604867 124604934 -31025186 + MER68 LTR ERVL 342 410 -153 2 1535 683 231 28 0 chr4 124604934 124605077 -31025043 - B1_Mur2 SINE Alu 0 149 3 2 1535 634 231 43 110 chr4 124605077 124605218 -31024902 + MER68 LTR ERVL 411 536 -27 2 1535 216 281 31 0 chr4 124605211 124605275 -31024845 + PB1D7 SINE Alu 19 84 -36 2 1535 299 338 94 7 chr4 124605358 124605507 -31024613 + Charlie19a DNA Charlie 164 325 -61 3 1535 460 294 29 0 chr4 124605895 124606031 -31024089 + MER3 DNA MER1_type 1 140 -69 3 1535 227 281 132 111 chr4 124606518 124606613 -31023507 - MER21B LTR ERV1 -271 592 490 3 1535 394 221 112 49 chr4 124606613 124606756 -31023364 - RSINE1 SINE B4 -11 154 3 3 1535 227 281 132 111 chr4 124606756 124606804 -31023316 - MER21B LTR ERV1 -374 489 446 3 1535 278 349 131 50 chr4 124607139 124607338 -31022782 - MER21B LTR ERV1 -525 338 124 3 1535 880 206 46 29 chr4 124607499 124607705 -31022415 + B3 SINE B2 1 192 -3 3 1535 213 250 141 12 chr4 124607776 124607861 -31022259 + PB1D10 SINE Alu 22 117 0 3 1535 1154 43 14 0 chr4 124608678 124608817 -31021303 + B1_Mus2 SINE Alu 1 141 -6 3 1535 370 301 17 93 chr4 124609017 124609097 -31021023 + B4A SINE B4 88 167 -125 3 1535 2772 151 35 20 chr4 124609097 124609551 -31020569 + RMER6B LTR ERVK 1 461 0 3 1535 802 156 0 47 chr4 124609551 124609617 -31020503 + B1_Mus1 SINE Alu 84 143 -5 3 1535 198 0 0 0 chr4 124609622 124609644 -31020476 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1535 370 301 17 93 chr4 124609644 124609663 -31020457 + B4A SINE B4 229 246 -46 3 1535 192 315 116 9 chr4 124609699 124609811 -31020309 + MIR SINE MIR 17 140 -122 3 1535 595 221 20 54 chr4 124609826 124609974 -31020146 + B1_Mur3 SINE Alu 7 149 0 3 1535 257 137 195 52 chr4 124610375 124610389 -31019731 + RLTR24 LTR ERV1 199 209 -320 3 1535 1150 81 0 26 chr4 124610389 124610541 -31019579 - B1_Mus1 SINE Alu 0 148 1 3 1535 257 137 195 52 chr4 124610541 124610603 -31019517 + RLTR24 LTR ERV1 210 286 -243 3 1535 370 301 17 93 chr4 124610742 124610822 -31019298 + B4A SINE B4 88 167 -125 3 1535 2758 153 35 20 chr4 124610822 124611276 -31018844 + RMER6B LTR ERVK 1 461 0 3 1535 802 156 0 47 chr4 124611276 124611342 -31018778 + B1_Mus1 SINE Alu 84 143 -5 3 1535 198 0 0 0 chr4 124611347 124611369 -31018751 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1535 370 301 17 93 chr4 124611369 124611388 -31018732 + B4A SINE B4 229 246 -46 3 1535 192 315 116 9 chr4 124611424 124611536 -31018584 + MIR SINE MIR 17 140 -122 3 1535 595 221 20 54 chr4 124611551 124611699 -31018421 + B1_Mur3 SINE Alu 7 149 0 3 1535 1197 164 100 94 chr4 124612100 124612113 -31018007 + RLTR24 LTR ERV1 199 209 -320 3 1535 1150 81 0 26 chr4 124612113 124612265 -31017855 - B1_Mus1 SINE Alu 0 148 1 3 1535 1197 164 100 94 chr4 124612265 124612555 -31017565 + RLTR24 LTR ERV1 210 505 -24 3 1535 1158 62 7 0 chr4 124612555 124612701 -31017419 - B1_Mus1 SINE Alu 0 148 2 3 1535 1197 164 100 94 chr4 124612701 124612725 -31017395 + RLTR24 LTR ERV1 506 529 0 3 1535 234 230 0 47 chr4 124612827 124612891 -31017229 + MER58B DNA MER1_type 123 183 -158 3 1535 670 259 0 0 chr4 124614803 124614942 -31015178 - B1_Mur2 SINE Alu -9 140 2 3 1535 332 205 82 3 chr4 124615095 124615186 -31014934 - B1_Mus2 SINE Alu 0 117 18 3 1535 301 176 3 89 chr4 124616056 124616161 -31013959 + PB1D9 SINE Alu 33 127 0 3 1535 687 164 0 8 chr4 124616182 124616305 -31013815 + B1_Mus2 SINE Alu 24 145 -2 3 1535 216 0 0 0 chr4 124616714 124616738 -31013382 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1535 1253 34 0 13 chr4 124616738 124616887 -31013233 - B1_Mm SINE Alu 0 147 1 3 1535 502 266 20 27 chr4 124617285 124617432 -31012688 + RSINE1 SINE B4 3 148 -17 3 1535 246 254 119 0 chr4 124617460 124617527 -31012593 + BC1_Mm scRNA scRNA 9 83 -69 3 1535 350 246 174 107 chr4 124618324 124618634 -31011486 - L2a LINE L2 -148 3278 2948 3 1535 1251 285 52 0 chr4 124618960 124619304 -31010816 - MTEa LTR MaLR -7 372 11 3 1535 555 184 51 34 chr4 124620525 124620643 -31009477 + B1_Mur1 SINE Alu 30 149 0 3 1535 811 265 78 75 chr4 124620714 124621020 -31009100 + MTE2a LTR MaLR 1 307 -72 3 1535 1091 180 19 124 chr4 124621042 124621355 -31008765 - MT2A LTR ERVL -166 435 1 3 1535 900 125 73 0 chr4 124621512 124621648 -31008472 - B1_Mur4 SINE Alu 0 150 5 3 1535 668 274 34 11 chr4 124621982 124622159 -31007961 - B4 SINE B4 -2 290 110 3 1535 224 254 102 0 chr4 124622165 124622224 -31007896 - PB1D10 SINE Alu -49 68 4 3 1535 516 161 0 0 chr4 124622303 124622396 -31007724 - B3 SINE B2 -2 214 122 3 1535 2183 150 68 21 chr4 124622362 124622791 -31007329 + RLTR28 LTR ERVL 74 522 -2 3 1535 1287 34 0 0 chr4 124622802 124622950 -31007170 + B1_Mus1 SINE Alu 1 148 0 3 1535 223 244 0 0 chr4 124622985 124623030 -31007090 - MER5A DNA MER1_type -124 65 21 3 1535 309 275 96 90 chr4 124623327 124623483 -31006637 + B4A SINE B4 1 157 -135 3 1535 783 192 20 9 chr4 124623427 124623587 -31006533 - B3A SINE B2 -43 152 1 3 1535 245 316 50 33 chr4 124623761 124623882 -31006238 + MLT1F LTR MaLR 1 123 -437 3 1535 357 179 338 73 chr4 124623888 124624039 -31006081 + B3 SINE B2 23 213 -3 3 1535 305 271 233 20 chr4 124624031 124624239 -31005881 + MLT1F LTR MaLR 161 392 -156 3 1535 523 258 291 22 chr4 124624423 124624653 -31005467 + B4A SINE B4 1 292 0 3 1535 350 197 15 0 chr4 124624839 124624905 -31005215 - ID4 SINE ID -14 69 3 3 1535 521 309 35 44 chr4 124625260 124625395 -31004725 + B4A SINE B4 92 229 -63 3 1535 634 163 147 0 chr4 124625395 124625524 -31004596 + B1_Mur3 SINE Alu 1 148 -1 3 1535 521 309 35 44 chr4 124625524 124625591 -31004529 + B4A SINE B4 230 292 0 3 1535 773 135 0 0 chr4 124626181 124626307 -31003813 - B1_Mur3 SINE Alu -23 126 1 3 1535 384 218 8 106 chr4 124626198 124626321 -31003799 - MT2B LTR ERVL -338 263 153 3 1535 346 223 191 0 chr4 124626349 124626443 -31003677 - PB1D7 SINE Alu -8 112 1 3 1535 1191 68 0 7 chr4 124626597 124626745 -31003375 - B1_Mm SINE Alu 0 147 1 3 1535 633 179 0 35 chr4 124627277 124627393 -31002727 - B1_Mur1 SINE Alu -35 114 3 3 1535 267 104 0 0 chr4 124628280 124628328 -31001792 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1535 444 349 8 0 chr4 124629464 124629593 -31000527 + MIRb SINE MIR 118 247 -21 3 1535 259 355 29 13 chr4 124630052 124630236 -30999884 + MIR SINE MIR 45 229 -33 3 1535 222 273 0 0 chr4 124631115 124631170 -30998950 - MER5B DNA MER1_type 0 178 124 3 1535 370 216 144 0 chr4 124631456 124631553 -30998567 + ID_B1 SINE B4 84 194 -30 3 1535 380 124 18 45 chr4 124631553 124631590 -30998530 + polypurine Low_complexity Low_complexity 1 37 0 3 1535 1173 113 0 0 chr4 124631590 124631767 -30998353 + (GAA)n Simple_repeat Simple_repeat 1 177 0 3 1535 380 124 18 45 chr4 124631767 124631839 -30998281 + GA-rich Low_complexity Low_complexity 38 107 0 3 1535 180 97 0 0 chr4 124631841 124631872 -30998248 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1535 400 301 159 0 chr4 124632031 124632194 -30997926 + Charlie1 DNA MER1_type 31 219 -2562 3 1535 1055 178 73 0 chr4 124632544 124632735 -30997385 + B3 SINE B2 5 209 -7 3 1535 361 344 47 47 chr4 124632760 124632995 -30997125 + B4A SINE B4 2 236 -56 3 1535 330 87 0 0 chr4 124633034 124633080 -30997040 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 1535 532 186 35 26 chr4 124633084 124633200 -30996920 + PB1D10 SINE Alu 1 117 0 3 1535 209 323 46 46 chr4 124633473 124633603 -30996517 - L2 LINE L2 -999 2420 2291 3 1535 1228 41 7 0 chr4 124634284 124634429 -30995691 - B1_Mm SINE Alu 0 147 2 3 1535 873 295 107 8 chr4 124635023 124635286 -30994834 - B4 SINE B4 -1 291 3 3 1535 251 346 55 34 chr4 124635295 124635559 -30994561 + L2b LINE L2 3111 3375 0 3 1535 216 185 56 0 chr4 124635561 124635615 -30994505 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 3 1535 963 151 81 6 chr4 124635638 124635811 -30994309 - B3 SINE B2 -27 189 4 3 1535 235 400 18 0 chr4 124636958 124637068 -30993052 + MIR SINE MIR 80 191 -71 3 1535 401 0 20 0 chr4 124637281 124637330 -30992790 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1535 252 263 0 0 chr4 124637330 124637387 -30992733 - ID4 SINE ID -11 72 16 3 1535 417 257 1 13 chr4 124637420 124637532 -30992588 - PB1D10 SINE Alu -10 107 1 3 1535 836 164 0 60 chr4 124637562 124637711 -30992409 + B1_Mur2 SINE Alu 3 142 -7 3 1535 221 361 84 78 chr4 124637778 124638099 -30992021 + L2b LINE L2 3044 3366 -9 3 1535 610 200 44 7 chr4 124638949 124639085 -30991035 - ID_B1 SINE B4 -82 142 2 3 1535 236 30 30 0 chr4 124639101 124639134 -30990986 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1535 269 358 54 18 chr4 124639144 124639255 -30990865 - Charlie15a DNA MER1_type -52 172 58 3 1535 567 241 0 0 chr4 124639257 124639419 -30990701 + (CA)n Simple_repeat Simple_repeat 2 163 0 3 1535 1448 73 10 20 chr4 124641150 124641346 -30988774 - B2_Mm2 SINE B2 -1 194 1 3 1535 554 171 99 61 chr4 124642004 124642135 -30987985 + B1_Mur4 SINE Alu 1 136 -14 3 1535 216 0 0 0 chr4 124642135 124642159 -30987961 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 3 1535 693 92 0 0 chr4 124642163 124642261 -30987859 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 3 1535 252 336 8 8 chr4 124642932 124643061 -30987059 + GA-rich Low_complexity Low_complexity 1 129 0 3 1535 439 251 55 2 chr4 124643566 124643682 -30986438 + PB1D7 SINE Alu 10 126 -21 3 1535 266 229 231 62 chr4 124643682 124643696 -30986424 + B4A SINE B4 95 246 -46 3 1535 536 206 8 0 chr4 124643700 124643826 -30986294 + GA-rich Low_complexity Low_complexity 2 128 0 3 1535 540 111 25 0 chr4 124643956 124644037 -30986083 - B1_Mur2 SINE Alu -1 148 66 3 1535 335 197 0 30 chr4 124644034 124644129 -30985991 - B1F2 SINE Alu -2 147 58 3 1535 1098 225 9 5 chr4 124644291 124644501 -30985619 - B3 SINE B2 -1 215 5 3 1535 414 0 0 0 chr4 124644520 124644566 -30985554 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1535 798 183 15 0 chr4 124644573 124644704 -30985416 - B1_Mur1 SINE Alu -16 133 1 4 1535 266 258 84 107 chr4 124644706 124644734 -30985386 - L1MB7 LINE L1 -6 6172 6148 4 1535 984 155 181 6 chr4 124644734 124644916 -30985204 + B3 SINE B2 2 215 -1 4 1535 322 258 93 98 chr4 124644916 124645080 -30985040 - L1MB7 LINE L1 -26 6158 5980 4 1535 278 268 24 12 chr4 124645250 124645333 -30984787 + BC1_Mm scRNA scRNA 8 91 -61 4 1535 212 288 53 99 chr4 124645880 124646011 -30984109 - MIRb SINE MIR -141 127 3 4 1535 324 0 0 0 chr4 124647008 124647044 -30983076 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1535 496 216 44 26 chr4 124647077 124647191 -30982929 + PB1D10 SINE Alu 1 116 -1 4 1535 225 94 0 0 chr4 124648193 124648225 -30981895 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 4 1535 572 73 12 0 chr4 124648234 124648316 -30981804 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1536 539 234 16 39 chr4 124651500 124651629 -30978491 + RSINE1 SINE B4 3 128 -37 4 1536 375 323 15 82 chr4 124651651 124651738 -30978382 + B4 SINE B4 10 153 -139 4 1536 589 141 0 0 chr4 124651738 124651830 -30978290 + B1_Mur2 SINE Alu 1 92 -57 4 1536 375 323 15 82 chr4 124651830 124651857 -30978263 + B4 SINE B4 154 201 -91 4 1536 405 0 0 0 chr4 124652598 124652643 -30977477 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1536 225 180 0 0 chr4 124653228 124653278 -30976842 + CT-rich Low_complexity Low_complexity 1 50 0 4 1536 1303 118 113 5 chr4 124653324 124653528 -30976592 - URR1A DNA MER1_type 0 226 1 4 1536 997 39 0 0 chr4 124653697 124653824 -30976296 - B1_Mm SINE Alu 0 147 21 4 1536 261 0 0 0 chr4 124654008 124654037 -30976083 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1536 520 99 26 4 chr4 124654092 124654183 -30975937 - B1_Mus2 SINE Alu -10 137 20 4 1536 1314 81 29 0 chr4 124654250 124654423 -30975697 + B2_Mm1t SINE B2 2 179 -14 4 1536 296 87 353 10 chr4 124654467 124654569 -30975551 + B2_Mm2 SINE B2 58 194 -1 4 1536 528 83 0 0 chr4 124654630 124654702 -30975418 + B2_Mm2 SINE B2 2 73 -122 4 1536 234 213 45 153 chr4 124654702 124654741 -30975379 + B4 SINE B4 2 100 -192 4 1536 245 250 0 0 chr4 124654744 124654796 -30975324 + GA-rich Low_complexity Low_complexity 2 53 0 4 1536 295 282 124 44 chr4 124655113 124655128 -30974992 - B1F2 SINE Alu 0 149 139 4 1536 255 79 0 0 chr4 124655128 124655166 -30974954 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1536 295 282 124 44 chr4 124655166 124655287 -30974833 - B1F2 SINE Alu -11 138 2 4 1536 447 291 95 18 chr4 124655287 124655334 -30974786 - ID_B1 SINE B4 -11 213 33 4 1536 203 173 58 0 chr4 124655722 124655774 -30974346 + (TCTCTG)n Simple_repeat Simple_repeat 5 59 0 4 1536 345 295 158 8 chr4 124655896 124656029 -30974091 + RSINE1 SINE B4 13 165 0 4 1536 26 50 0 0 chr4 124657262 124657302 -30972818 + AT_rich Low_complexity Low_complexity 1 40 0 4 1536 382 248 57 0 chr4 124657574 124657679 -30972441 + RMER15 LTR ERVL 422 532 -43 4 1536 802 182 0 39 chr4 124657694 124657848 -30972272 + B1_Mur1 SINE Alu 2 149 0 4 1536 195 129 0 0 chr4 124657848 124657879 -30972241 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1536 206 257 13 39 chr4 124657917 124657994 -30972126 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 4 1536 574 230 200 42 chr4 124658010 124658250 -30971870 - B4A SINE B4 -12 280 3 4 1536 204 272 140 11 chr4 124659161 124659254 -30970866 - MIRc SINE MIR -61 207 103 4 1536 222 288 49 24 chr4 124659376 124659458 -30970662 + BC1_Mm scRNA scRNA 18 101 -51 4 1536 452 179 24 0 chr4 124659706 124659790 -30970330 + ID_B1 SINE B4 114 199 -25 4 1536 231 242 0 0 chr4 124659801 124659863 -30970257 + GA-rich Low_complexity Low_complexity 3 64 0 4 1536 598 296 155 8 chr4 124659996 124660138 -30969982 + MLT1D LTR MaLR 31 179 -326 4 1536 291 28 0 0 chr4 124660138 124660174 -30969946 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4 1536 598 296 155 8 chr4 124660174 124660296 -30969824 + MLT1D LTR MaLR 180 333 -172 4 1536 537 222 36 27 chr4 124660590 124660701 -30969419 + PB1D10 SINE Alu 1 112 -5 4 1536 796 264 102 0 chr4 124660717 124660933 -30969187 + B4A SINE B4 8 245 -47 4 1536 424 205 0 0 chr4 124661909 124661992 -30968128 + RSINE1 SINE B4 2 84 -81 4 1536 231 348 0 21 chr4 124661919 124662013 -30968107 + B3A SINE B2 11 102 -96 4 1536 216 0 0 0 chr4 124662031 124662055 -30968065 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1536 669 25 0 0 chr4 124662367 124662446 -30967674 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1536 22 0 0 0 chr4 124662513 124662535 -30967585 + AT_rich Low_complexity Low_complexity 1 22 0 4 1536 300 235 24 24 chr4 124663185 124663268 -30966852 - MIRm SINE MIR -133 143 61 4 1536 22 35 0 0 chr4 124663646 124663675 -30966445 + GC_rich Low_complexity Low_complexity 1 29 0 4 1536 29 70 0 0 chr4 124663712 124663769 -30966351 + GC_rich Low_complexity Low_complexity 1 57 0 4 1536 789 41 0 0 chr4 124664559 124664656 -30965464 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 1536 292 362 16 8 chr4 124666683 124666811 -30963309 - MIR SINE MIR -122 140 12 4 1536 206 227 30 15 chr4 124667870 124667937 -30962183 + L3b LINE CR1 80 147 -335 4 1536 206 292 31 0 chr4 124667973 124668038 -30962082 + L3b LINE CR1 242 308 -174 4 1536 250 333 53 53 chr4 124669250 124669345 -30960775 + PB1D7 SINE Alu 19 113 -7 4 1536 300 27 0 0 chr4 124669348 124669385 -30960735 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 4 1536 1383 76 49 0 chr4 124669395 124669580 -30960540 + B2_Mm2 SINE B2 2 195 0 4 1536 559 253 132 6 chr4 124669598 124669757 -30960363 + B3A SINE B2 3 181 -17 4 1536 280 232 40 8 chr4 124669761 124669887 -30960233 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1536 445 258 88 0 chr4 124669962 124670080 -30960040 - B1F1 SINE Alu 0 149 19 4 1536 180 0 0 0 chr4 124670523 124670543 -30959577 + (CAG)n Simple_repeat Simple_repeat 1 20 0 4 1536 443 277 92 66 chr4 124671250 124671521 -30958599 - B4A SINE B4 -12 280 3 4 1536 212 86 29 0 chr4 124671525 124671560 -30958560 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1536 214 211 0 34 chr4 124671565 124671581 -30958539 + polypyrimidine Low_complexity Low_complexity 43 58 0 4 1536 850 203 0 20 chr4 124671581 124671732 -30958388 - B1_Mur3 SINE Alu 0 149 2 4 1536 214 211 0 34 chr4 124671732 124671760 -30958360 + polypyrimidine Low_complexity Low_complexity 16 42 0 4 1536 892 85 268 0 chr4 124671760 124671913 -30958207 - B2_Mm2 SINE B2 0 195 2 4 1536 214 211 0 34 chr4 124671913 124671926 -30958194 + polypyrimidine Low_complexity Low_complexity 3 15 0 4 1536 402 57 0 0 chr4 124672268 124672321 -30957799 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1536 458 208 50 117 chr4 124672619 124672739 -30957381 + B1F SINE Alu 10 121 -28 4 1536 1097 73 169 6 chr4 124673082 124673248 -30956872 - B2_Mm2 SINE B2 -2 193 1 4 1536 943 204 19 48 chr4 124674412 124674618 -30955502 + B3 SINE B2 5 204 -12 4 1536 687 250 138 0 chr4 124675068 124675264 -30954856 - ID_B1 SINE B4 -1 223 1 4 1536 276 237 85 0 chr4 124675707 124675766 -30954354 - PB1D7 SINE Alu -5 115 52 4 1536 256 276 59 66 chr4 124675849 124675985 -30954135 + YREP_Mm Unknown Unknown 160 294 -1518 4 1536 914 88 16 0 chr4 124675864 124675989 -30954131 - B1_Mur3 SINE Alu -4 145 19 4 1536 469 242 36 51 chr4 124676445 124676463 -30953657 + CYRA11_Mm Unknown Y-chromosome 155 345 -270 4 1536 1039 111 23 23 chr4 124676463 124676639 -30953481 - URR1A DNA MER1_type 0 226 51 4 1536 570 232 59 44 chr4 124676735 124676870 -30953250 - ID_B1 SINE B4 -5 219 83 4 1536 257 276 123 62 chr4 124676777 124676939 -30953181 - MT2B2 LTR ERVL -327 257 86 4 1536 434 58 14 19 chr4 124677030 124677102 -30953018 + B1_Mm SINE Alu 62 147 0 4 1536 183 80 0 0 chr4 124677692 124677717 -30952403 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1536 775 173 0 0 chr4 124677718 124677845 -30952275 - B1_Mus2 SINE Alu -12 135 9 4 1536 512 281 15 15 chr4 124677933 124678063 -30952057 + B1F SINE Alu 18 147 -2 4 1536 340 248 27 27 chr4 124678063 124678175 -30951945 + BC1_Mm scRNA scRNA 3 114 -38 4 1536 252 185 154 0 chr4 124678567 124678632 -30951488 + MIRc SINE MIR 80 154 -114 4 1536 478 266 28 0 chr4 124678650 124678759 -30951361 + B1F SINE Alu 5 116 -33 4 1536 427 294 21 42 chr4 124678759 124678792 -30951328 + ID_B1 SINE B4 86 224 0 4 1536 858 264 44 10 chr4 124678795 124678998 -30951122 + ID_B1 SINE B4 14 223 -1 4 1536 436 208 38 47 chr4 124679129 124679235 -30950885 + PB1D10 SINE Alu 13 117 0 4 1536 744 208 21 7 chr4 124679236 124679381 -30950739 + B1_Mur2 SINE Alu 2 148 -1 4 1536 764 156 8 0 chr4 124679394 124679516 -30950604 + B1_Mus2 SINE Alu 25 147 0 4 1536 21 36 0 0 chr4 124679559 124679587 -30950533 + AT_rich Low_complexity Low_complexity 1 28 0 4 1536 346 327 154 0 chr4 124679662 124679772 -30950348 + RSINE1 SINE B4 30 156 -9 4 1536 334 188 20 0 chr4 124679802 124679903 -30950217 + (CTA)n Simple_repeat Simple_repeat 1 103 0 4 1536 844 311 36 25 chr4 124679918 124680195 -30949925 + B4A SINE B4 2 281 -11 4 1536 249 258 32 0 chr4 124680586 124680648 -30949472 + CT-rich Low_complexity Low_complexity 1 64 0 4 1536 423 243 0 83 chr4 124680648 124680769 -30949351 - PB1D10 SINE Alu 0 117 7 4 1536 223 286 16 0 chr4 124680715 124680778 -30949342 - B4A SINE B4 -147 145 82 4 1536 424 319 5 130 chr4 124681015 124681121 -30948999 - MER20 DNA MER1_type 0 219 130 4 1536 969 114 71 0 chr4 124681121 124681261 -30948859 - B1_Mur4 SINE Alu 0 150 1 5 1536 424 319 5 130 chr4 124681261 124681338 -30948782 - MER20 DNA MER1_type -90 129 59 4 1536 838 140 210 17 chr4 124681342 124681523 -30948597 + B3 SINE B2 1 216 0 5 1536 678 248 43 6 chr4 124681544 124681620 -30948500 + ID SINE ID 2 83 -141 5 1536 324 282 45 18 chr4 124681620 124681732 -30948388 + PB1D10 SINE Alu 3 117 0 5 1536 290 310 229 6 chr4 124683262 124683437 -30946683 + MIRb SINE MIR 55 268 0 5 1536 204 188 0 0 chr4 124684598 124684630 -30945490 + G-rich Low_complexity Low_complexity 3 34 0 5 1536 264 100 0 0 chr4 124685881 124685921 -30944199 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 5 1536 333 0 0 0 chr4 124685951 124685988 -30944132 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1536 395 301 99 26 chr4 124686484 124686675 -30943445 - B3 SINE B2 -11 205 1 5 1536 228 333 98 16 chr4 124687038 124687160 -30942960 - L2b LINE L2 -16 3359 3228 5 1536 498 242 100 15 chr4 124687376 124687506 -30942614 + RSINE1 SINE B4 5 145 -20 5 1536 396 0 0 0 chr4 124687507 124687551 -30942569 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1536 667 260 43 100 chr4 124687670 124687901 -30942219 + ID_B1 SINE B4 1 218 -6 5 1536 277 329 20 27 chr4 124687786 124687933 -30942187 - YREP_Mm Unknown Unknown -1516 296 151 5 1536 381 273 81 112 chr4 124687948 124687984 -30942136 + B3 SINE B2 1 36 -180 5 1536 1111 101 0 0 chr4 124687984 124688123 -30941997 + B1_Mus1 SINE Alu 3 141 -7 5 1536 261 0 0 0 chr4 124688124 124688153 -30941967 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5 1536 429 273 81 111 chr4 124688153 124688276 -30941844 + B3A SINE B2 36 160 -38 5 1536 531 31 0 0 chr4 124688281 124688346 -30941774 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1536 515 270 137 28 chr4 124688746 124689001 -30941119 - Charlie5 DNA MER1_type -105 2519 2237 5 1536 1197 49 0 0 chr4 124689079 124689221 -30940899 - B1_Mus2 SINE Alu -4 143 2 5 1536 1272 106 28 0 chr4 124689230 124689410 -30940710 - B2_Mm1t SINE B2 -8 185 1 5 1536 733 162 53 2 chr4 124689513 124689642 -30940478 - B1_Mus1 SINE Alu -9 140 7 5 1536 232 326 45 0 chr4 124689654 124689743 -30940377 - L2b LINE L2 -348 3071 2979 5 1536 438 20 0 0 chr4 124689924 124689975 -30940145 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1536 753 196 0 47 chr4 124690642 124690792 -30939328 - B1_Mur2 SINE Alu -2 147 5 5 1536 412 67 53 0 chr4 124690852 124690927 -30939193 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1536 348 245 122 0 chr4 124691325 124691464 -30938656 - HAL1-2a_MD LINE L1 -525 2499 2344 5 1536 228 288 61 24 chr4 124691617 124691699 -30938421 + MER5A DNA MER1_type 1 85 -104 5 1536 1180 258 36 11 chr4 124694195 124694219 -30935901 - B4 SINE B4 0 292 270 5 1536 312 70 0 0 chr4 124694219 124694262 -30935858 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1536 1180 258 36 11 chr4 124694262 124694515 -30935605 - B4 SINE B4 -23 269 8 5 1536 1393 240 11 7 chr4 124695502 124695779 -30934341 - B4 SINE B4 -4 288 11 5 1536 2031 205 40 22 chr4 124696053 124696453 -30933667 + MTD LTR MaLR 13 419 0 5 1536 207 0 0 0 chr4 124697156 124697179 -30932941 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 5 1536 931 127 12 0 chr4 124697180 124697353 -30932767 + (GA)n Simple_repeat Simple_repeat 2 176 0 5 1536 410 268 70 7 chr4 124697546 124697689 -30932431 - MIR SINE MIR -75 187 36 5 1536 1609 210 18 18 chr4 124698460 124698800 -30931320 - MER58B DNA MER1_type -1 340 1 5 1536 946 122 14 7 chr4 124699091 124699232 -30930888 + B1_Mur2 SINE Alu 2 143 -6 5 1536 627 296 39 39 chr4 124699239 124699471 -30930649 + B4A SINE B4 4 235 -57 5 1536 353 136 0 15 chr4 124699488 124699555 -30930565 + GA-rich Low_complexity Low_complexity 2 67 0 5 1536 258 298 123 89 chr4 124699558 124699916 -30930204 - RMER10A LTR ERVL -1 441 72 5 1536 2755 156 36 18 chr4 124700844 124701347 -30928773 - RMER1B Other Other 0 1066 555 5 1536 617 191 150 7 chr4 124701359 124701512 -30928608 - RMER1B Other Other -680 386 212 5 1536 878 190 75 20 chr4 124701673 124701872 -30928248 + B3 SINE B2 1 210 -6 5 1536 500 311 89 5 chr4 124702145 124702336 -30927784 - ID_B1 SINE B4 -16 208 2 5 1536 311 322 8 48 chr4 124702348 124702472 -30927648 - PB1D7 SINE Alu -1 119 1 5 1536 540 248 24 78 chr4 124702872 124703038 -30927082 + ID_B1 SINE B4 1 157 -67 5 1536 1404 95 16 0 chr4 124703038 124703228 -30926892 + B2_Mm2 SINE B2 3 195 0 5 1536 375 121 0 0 chr4 124703228 124703286 -30926834 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 1536 1468 11 11 0 chr4 124703286 124703464 -30926656 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1536 250 310 0 78 chr4 124703587 124703664 -30926456 + ID4_ SINE ID 4 74 -9 5 1536 284 138 121 15 chr4 124703683 124703749 -30926371 + ID4 SINE ID 3 75 -8 5 1536 922 85 132 0 chr4 124703783 124703912 -30926208 + B1_Mus2 SINE Alu 1 146 -1 5 1536 307 304 0 42 chr4 124703955 124704051 -30926069 - MER5A1 DNA MER1_type -61 105 14 5 1536 405 0 0 0 chr4 124704269 124704314 -30925806 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1536 234 0 0 0 chr4 124705599 124705625 -30924495 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1536 484 124 278 28 chr4 124705671 124705779 -30924341 + B1_Mus2 SINE Alu 12 146 -1 5 1536 387 284 101 47 chr4 124705792 124705921 -30924199 - B1F1 SINE Alu -13 136 1 5 1536 267 311 62 70 chr4 124705810 124705938 -30924182 - ID_B1 SINE B4 -33 191 65 5 1536 408 253 0 0 chr4 124706192 124706271 -30923849 - PB1D7 SINE Alu -6 114 36 5 1536 358 102 14 14 chr4 124706398 124706468 -30923652 + (TCC)n Simple_repeat Simple_repeat 1 70 0 5 1536 275 326 137 0 chr4 124706471 124706566 -30923554 - PB1D9 SINE Alu -6 114 7 5 1536 283 284 110 0 chr4 124706694 124706803 -30923317 - L2 LINE L2 -457 2962 2842 5 1536 654 65 0 0 chr4 124706807 124706899 -30923221 + (TC)n Simple_repeat Simple_repeat 1 92 0 5 1536 202 182 0 0 chr4 124707071 124707104 -30923016 + polypyrimidine Low_complexity Low_complexity 2 34 0 5 1536 403 193 43 13 chr4 124707630 124707726 -30922394 + B1F1 SINE Alu 3 97 -20 5 1536 564 154 28 19 chr4 124707981 124708087 -30922033 + PB1D9 SINE Alu 5 111 -9 5 1536 449 247 103 64 chr4 124708219 124708375 -30921745 + B3A SINE B2 1 162 -36 5 1536 837 232 22 70 chr4 124708716 124708943 -30921177 + B3 SINE B2 1 216 0 5 1536 407 191 34 118 chr4 124709103 124709222 -30920898 + MT2B LTR ERVL 156 264 -337 5 1536 1067 92 0 0 chr4 124709115 124709256 -30920864 + B1_Mur4 SINE Alu 9 149 -1 5 1536 628 217 59 22 chr4 124709281 124709453 -30920667 - B3 SINE B2 -4 189 3 5 1536 597 281 54 29 chr4 124709464 124709534 -30920586 - ID_B1 SINE B4 -4 220 144 5 1536 1409 75 43 5 chr4 124709534 124709722 -30920398 - B2_Mm2 SINE B2 0 195 1 5 1536 597 281 54 29 chr4 124709722 124709856 -30920264 - ID_B1 SINE B4 -81 143 11 5 1536 686 125 26 26 chr4 124710261 124710376 -30919744 + PB1D9 SINE Alu 1 115 -5 5 1536 735 176 80 7 chr4 124710394 124710531 -30919589 + B1_Mus2 SINE Alu 1 147 0 5 1536 430 262 9 52 chr4 124710564 124710689 -30919431 + PB1D9 SINE Alu 5 120 0 5 1536 949 231 33 6 chr4 124710833 124711016 -30919104 - B3 SINE B2 -6 210 23 5 1536 191 347 56 0 chr4 124711116 124711188 -30918932 + MIR SINE MIR 14 89 -173 5 1536 189 355 32 16 chr4 124712918 124712981 -30917139 + L2 LINE L2 460 523 -2896 5 1536 1230 75 0 0 chr4 124713196 124713733 -30916387 + (TG)n Simple_repeat Simple_repeat 1 537 0 5 1536 285 256 37 0 chr4 124713790 124713872 -30916248 + MIR SINE MIR 82 166 -96 5 1536 342 250 0 13 chr4 124713876 124713953 -30916167 + ID_B1 SINE B4 86 161 -63 5 1536 207 0 0 0 chr4 124713978 124714001 -30916119 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1536 437 355 7 47 chr4 124714017 124714165 -30915955 + RSINE1 SINE B4 3 144 -21 5 1536 192 209 0 44 chr4 124714194 124714239 -30915881 + MIRb SINE MIR 203 245 -23 5 1536 429 20 0 0 chr4 124715313 124715363 -30914757 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1536 572 203 7 126 chr4 124715387 124715522 -30914598 - B4 SINE B4 -12 280 162 5 1536 1243 41 7 0 chr4 124716564 124716710 -30913410 - B1_Mus2 SINE Alu 0 147 1 5 1536 420 253 56 101 chr4 124716710 124716729 -30913391 - B2_Mm2 SINE B2 -14 181 163 5 1536 270 0 0 0 chr4 124716729 124716759 -30913361 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1536 252 0 0 0 chr4 124716759 124716786 -30913334 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1536 726 238 54 18 chr4 124716786 124716953 -30913167 - B3A SINE B2 -24 174 2 5 1536 214 148 377 0 chr4 124717096 124717157 -30912963 - B4 SINE B4 -206 86 3 5 1536 568 231 49 8 chr4 124718782 124718904 -30911216 - RSINE1 SINE B4 -36 129 3 5 1536 330 143 18 0 chr4 124719110 124719166 -30910954 - PB1D10 SINE Alu -6 111 55 5 1536 372 161 0 0 chr4 124719152 124719214 -30910906 - B2_Mm2 SINE B2 -133 62 1 5 1536 484 226 34 17 chr4 124719229 124719346 -30910774 - PB1D9 SINE Alu 0 120 2 5 1536 1227 48 7 0 chr4 124719519 124719665 -30910455 - B1_Mus2 SINE Alu 0 147 1 5 1536 556 232 71 8 chr4 124719672 124719798 -30910322 - B1_Mur1 SINE Alu -7 142 9 5 1536 538 155 19 28 chr4 124720168 124720274 -30909846 + PB1D9 SINE Alu 15 119 -1 5 1536 313 238 172 0 chr4 124720274 124720290 -30909830 + B4 SINE B4 100 242 -50 5 1536 347 274 19 15 chr4 124721611 124721724 -30908396 + PB1D10 SINE Alu 6 116 -4 5 1536 223 298 104 113 chr4 124722753 124722859 -30907261 + PB1 SINE Alu 21 125 -2 5 1536 338 203 17 0 chr4 124723717 124723776 -30906344 - ID4 SINE ID 0 83 24 5 1536 958 277 19 0 chr4 124723916 124724122 -30905998 - B3 SINE B2 0 216 7 6 1536 947 63 87 0 chr4 124724204 124724330 -30905790 + B1_Mus2 SINE Alu 2 138 -9 6 1536 221 305 58 78 chr4 124726687 124726790 -30903330 + PB1D9 SINE Alu 20 120 0 6 1536 186 103 0 0 chr4 124726899 124726928 -30903192 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 6 1536 203 217 101 0 chr4 124726955 124727024 -30903096 - L2a LINE L2 -53 3373 3298 6 1536 281 312 273 15 chr4 124727111 124727364 -30902756 - MER21B LTR ERV1 -142 721 402 6 1536 1818 125 112 9 chr4 124727364 124727687 -30902433 + RLTR15 LTR ERVK 1 356 -3 6 1536 295 297 83 83 chr4 124727765 124727782 -30902338 - MER21B LTR ERV1 -546 317 301 6 1536 1252 47 0 0 chr4 124727782 124727930 -30902190 - B1_Mus1 SINE Alu 0 148 1 6 1536 295 297 83 83 chr4 124727930 124728092 -30902028 - MER21B LTR ERV1 -563 300 138 6 1536 886 184 0 0 chr4 124728455 124728596 -30901524 + B1_Mus1 SINE Alu 7 147 -1 6 1536 671 301 0 35 chr4 124728660 124728829 -30901291 - RSINE1 SINE B4 0 165 3 6 1536 1326 77 61 0 chr4 124729281 124729462 -30900658 - B2_Mm1a SINE B2 -1 192 1 6 1536 1488 53 5 11 chr4 124730182 124730372 -30899748 - B2_Mm2 SINE B2 -4 191 3 6 1536 225 227 25 62 chr4 124730372 124730446 -30899674 - ID4 SINE ID -8 75 3 6 1536 518 188 246 15 chr4 124731076 124731206 -30898914 - ORR1D1 LTR MaLR -214 160 1 6 1536 244 264 34 128 chr4 124731495 124731527 -30898593 + ID_B1 SINE B4 76 209 -15 6 1536 585 161 43 35 chr4 124731527 124731643 -30898477 + B1_Mur2 SINE Alu 18 134 -15 6 1536 207 0 0 0 chr4 124731726 124731749 -30898371 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1536 350 272 34 26 chr4 124731848 124731965 -30898155 - PB1D7 SINE Alu -1 119 2 6 1536 787 97 62 0 chr4 124734881 124734994 -30895126 + B1_Mur4 SINE Alu 22 141 -9 6 1536 25 0 0 0 chr4 124734994 124735019 -30895101 + GC_rich Low_complexity Low_complexity 1 25 0 6 1536 340 274 94 31 chr4 124735544 124735672 -30894448 + B1F2 SINE Alu 14 149 0 6 1536 384 83 76 15 chr4 124735672 124735764 -30894356 + L1Md_F3 LINE L1 6490 6584 0 6 1536 614 246 40 28 chr4 124735767 124735963 -30894157 + B3 SINE B2 2 190 -5 6 1536 939 218 11 0 chr4 124737015 124737186 -30892934 + B4A SINE B4 58 230 -62 6 1536 530 299 171 6 chr4 124737186 124737361 -30892759 + B3 SINE B2 1 204 -12 6 1536 209 33 33 0 chr4 124737365 124737395 -30892725 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 6 1536 369 286 0 0 chr4 124737398 124737475 -30892645 + B4A SINE B4 210 286 -6 6 1536 1104 53 0 0 chr4 124737742 124737874 -30892246 + B1_Mus2 SINE Alu 3 134 -13 6 1536 949 219 21 16 chr4 124738260 124738434 -30891686 + B3A SINE B2 2 174 -24 6 1536 276 30 0 0 chr4 124738434 124738467 -30891653 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1536 949 219 21 16 chr4 124738467 124738482 -30891638 + B3A SINE B2 175 192 -6 6 1536 1196 70 0 0 chr4 124738484 124738626 -30891494 + B1_Mus1 SINE Alu 2 143 -5 6 1536 216 0 0 0 chr4 124738735 124738759 -30891361 + (TTG)n Simple_repeat Simple_repeat 3 26 0 6 1536 2695 134 128 27 chr4 124738776 124739072 -30891048 + RMER4B LTR ERVK 19 330 -255 6 1536 1546 58 5 0 chr4 124739072 124739262 -30890858 + B2_Mm1t SINE B2 2 192 -1 6 1536 2695 134 128 27 chr4 124739262 124739480 -30890640 + RMER4B LTR ERVK 331 585 0 6 1536 270 95 0 0 chr4 124739494 124739536 -30890584 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1536 271 203 0 0 chr4 124739549 124739608 -30890512 - Lx9 LINE L1 -188 7456 7398 6 1536 1151 90 13 0 chr4 124739642 124739797 -30890323 + B2_Mm2 SINE B2 5 161 -34 6 1536 333 0 0 0 chr4 124739797 124739834 -30890286 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 6 1536 186 71 0 0 chr4 124739875 124739903 -30890217 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1536 908 124 13 33 chr4 124739903 124740053 -30890067 - B1_Mus2 SINE Alu 0 147 1 6 1536 549 199 12 13 chr4 124740055 124740195 -30889925 + PB1D9 SINE Alu 13 149 0 6 1536 562 220 8 85 chr4 124740228 124740324 -30889796 - B1_Mur1 SINE Alu -30 119 32 6 1536 1666 32 0 0 chr4 124740324 124740512 -30889608 - B2_Mm1t SINE B2 -3 190 3 6 1536 562 220 8 85 chr4 124740512 124740544 -30889576 - B1_Mur1 SINE Alu -118 31 1 6 1536 534 236 66 0 chr4 124740586 124740692 -30889428 + RSINE1 SINE B4 2 114 -51 6 1536 366 143 48 83 chr4 124741593 124741677 -30888443 - PB1D10 SINE Alu -7 110 30 6 1536 458 289 44 0 chr4 124741703 124741838 -30888282 - B1F1 SINE Alu -8 141 1 6 1536 297 209 98 65 chr4 124743127 124743219 -30886901 + B1_Mur2 SINE Alu 55 149 0 6 1536 252 0 0 0 chr4 124743317 124743345 -30886775 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1536 575 179 98 0 chr4 124743345 124743468 -30886652 + B1_Mus1 SINE Alu 1 135 -13 6 1536 349 225 12 48 chr4 124743500 124743584 -30886536 - ID2 SINE ID 0 83 3 6 1536 428 162 27 0 chr4 124743675 124743749 -30886371 - PB1D7 SINE Alu -8 112 37 6 1536 227 211 35 0 chr4 124744723 124744780 -30885340 + B4A SINE B4 94 152 -140 6 1536 207 0 0 0 chr4 124745436 124745459 -30884661 + (TGAG)n Simple_repeat Simple_repeat 4 26 0 6 1536 308 233 86 79 chr4 124745603 124745743 -30884377 - L1MD1 LINE L1 -15 6227 6087 6 1536 1233 41 7 0 chr4 124745974 124746120 -30884000 - B1_Mus2 SINE Alu 0 147 1 6 1536 572 151 0 11 chr4 124746266 124746353 -30883767 - B3 SINE B2 -125 91 6 6 1536 784 255 29 29 chr4 124746467 124746677 -30883443 - B3 SINE B2 -2 214 5 6 1536 259 289 121 20 chr4 124746700 124746799 -30883321 + PB1D10 SINE Alu 1 109 -8 6 1536 367 139 62 12 chr4 124746873 124746953 -30883167 + L1MB3 LINE L1 5782 5865 -318 6 1536 545 230 14 88 chr4 124746989 124747137 -30882983 - B1F1 SINE Alu -3 146 10 6 1536 186 71 0 0 chr4 124747164 124747192 -30882928 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 6 1536 318 210 42 0 chr4 124747198 124747286 -30882834 - B1_Mur4 SINE Alu -8 112 17 6 1536 690 187 43 29 chr4 124747469 124747607 -30882513 - B1_Mus2 SINE Alu -2 145 6 6 1536 953 238 30 5 chr4 124748087 124748290 -30881830 - B3 SINE B2 -8 208 1 6 1536 362 264 37 28 chr4 124749157 124749266 -30880854 + PB1D10 SINE Alu 7 116 -1 6 1536 238 242 61 0 chr4 124749442 124749508 -30880612 - MIRc SINE MIR -87 181 112 6 1536 279 287 110 52 chr4 124751927 124752063 -30878057 + B1F SINE Alu 1 144 -5 6 1536 621 262 21 0 chr4 124752296 124752437 -30877683 + RSINE1 SINE B4 3 146 -19 6 1536 714 102 102 0 chr4 124753743 124753851 -30876269 - PB1D9 SINE Alu 0 120 2 6 1536 550 236 28 21 chr4 124754039 124754182 -30875938 + B1_Mur1 SINE Alu 1 144 -5 6 1536 897 139 28 7 chr4 124754605 124754750 -30875370 + B1_Mus1 SINE Alu 1 148 0 6 1536 745 238 206 22 chr4 124754801 124754977 -30875143 + B4 SINE B4 23 223 -69 6 1536 261 0 0 0 chr4 124754977 124755006 -30875114 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1536 745 238 206 22 chr4 124755006 124755057 -30875063 + B4 SINE B4 224 291 -1 6 1536 2315 112 215 15 chr4 124755071 124755532 -30874588 - RMER15 LTR ERVL 0 575 23 6 1536 2360 73 6 39 chr4 124755592 124755635 -30874485 - ORR1A2 LTR MaLR -8 319 280 6 1536 1278 99 60 0 chr4 124755635 124755817 -30874303 - B2_Mm2 SINE B2 -2 193 1 6 1536 2360 73 6 39 chr4 124755817 124756103 -30874017 - ORR1A2 LTR MaLR -48 279 1 6 1536 8573 146 29 169 chr4 124756103 124757620 -30872500 - ORR1A2-int LTR MaLR 0 1963 532 6 1536 243 0 0 0 chr4 124757620 124757647 -30872473 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1536 8573 146 29 169 chr4 124757647 124757919 -30872201 - ORR1A2-int LTR MaLR -1432 531 420 6 1536 1234 34 7 0 chr4 124757919 124758065 -30872055 + B1_Mm SINE Alu 1 147 0 6 1536 8573 146 29 169 chr4 124758065 124758556 -30871564 - ORR1A2-int LTR MaLR -1544 419 1 6 1536 2414 113 3 0 chr4 124758556 124758882 -30871238 - ORR1A2 LTR MaLR 0 327 1 6 1536 219 235 146 73 chr4 124758904 124759014 -30871106 - MIR SINE MIR -46 216 99 6 1536 225 94 0 0 chr4 124759021 124759053 -30871067 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1536 515 257 65 33 chr4 124759060 124759213 -30870907 - B3 SINE B2 -52 164 7 6 1536 935 226 20 5 chr4 124759235 124759435 -30870685 - B3 SINE B2 -6 210 8 6 1536 1228 74 34 0 chr4 124759507 124759682 -30870438 + B2_Mm2 SINE B2 15 195 0 6 1536 508 176 74 25 chr4 124759685 124759807 -30870313 + B3 SINE B2 87 214 -2 6 1536 281 314 56 35 chr4 124759831 124759973 -30870147 + RSINE1 SINE B4 2 146 -19 6 1536 288 255 88 0 chr4 124760074 124760176 -30869944 + L1MD LINE L1 3758 3868 -2278 6 1536 312 241 51 0 chr4 124760193 124760272 -30869848 + B3 SINE B2 29 111 -105 6 1536 26 0 0 0 chr4 124760338 124760364 -30869756 + AT_rich Low_complexity Low_complexity 1 26 0 6 1536 1236 55 0 0 chr4 124760374 124760520 -30869600 + B1_Mus2 SINE Alu 2 147 0 6 1536 261 0 0 0 chr4 124760520 124760549 -30869571 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1536 1086 282 75 15 chr4 124760557 124760946 -30869174 + Lx8 LINE L1 6925 7336 -137 6 1536 895 189 64 12 chr4 124760962 124761150 -30868970 + B3 SINE B2 4 213 -3 6 1536 329 234 127 99 chr4 124761166 124761308 -30868812 - B1_Mur3 SINE Alu -2 147 2 6 1536 255 291 12 37 chr4 124761239 124761321 -30868799 - ID_B1 SINE B4 -75 149 70 6 1536 252 278 119 25 chr4 124761279 124761397 -30868723 - MT2B LTR ERVL -314 287 159 6 1536 270 292 13 89 chr4 124761351 124761430 -30868690 - ID SINE ID -149 75 3 6 1536 325 290 119 10 chr4 124761464 124761565 -30868555 - ID_B1 SINE B4 -20 204 93 6 1536 447 261 187 4 chr4 124761749 124761928 -30868192 + ID_B1 SINE B4 1 198 -26 6 1536 21 0 0 0 chr4 124762601 124762622 -30867498 + GC_rich Low_complexity Low_complexity 1 21 0 6 1536 383 239 43 0 chr4 124763185 124763277 -30866843 + Charlie4z DNA MER1_type 52 147 -20 6 1536 1155 88 0 0 chr4 124763529 124763677 -30866443 + B1_Mus1 SINE Alu 1 148 0 6 1536 682 235 0 57 chr4 124763728 124763886 -30866234 - B1_Mur1 SINE Alu 0 149 1 6 1536 346 294 34 20 chr4 124764336 124764482 -30865638 - L1MC4a LINE L1 -6 7876 7729 7 1536 207 0 0 0 chr4 124764486 124764509 -30865611 + (TGGGGG)n Simple_repeat Simple_repeat 6 28 0 7 1536 350 258 40 30 chr4 124764551 124764651 -30865469 + RSINE1 SINE B4 1 101 -64 7 1536 633 292 6 35 chr4 124764655 124764799 -30865321 + B3A SINE B2 7 151 -47 7 1536 198 0 0 0 chr4 124764799 124764821 -30865299 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 7 1536 633 292 6 35 chr4 124764821 124764850 -30865270 + B3A SINE B2 152 175 -23 7 1536 259 306 83 90 chr4 124764847 124764980 -30865140 + B1F1 SINE Alu 18 149 0 7 1536 557 157 40 10 chr4 124765355 124765473 -30864647 - PB1D9 SINE Alu -1 149 4 7 1536 257 257 27 0 chr4 124765508 124765582 -30864538 - ID4 SINE ID -5 78 3 7 1536 1471 69 16 0 chr4 124765677 124765866 -30864254 - B2_Mm2 SINE B2 -2 193 2 7 1536 264 231 77 0 chr4 124765928 124765993 -30864127 - PB1D9 SINE Alu -50 70 1 7 1536 1415 154 5 9 chr4 124766010 124766226 -30863894 - B3 SINE B2 0 216 2 7 1536 620 221 37 30 chr4 124766286 124766421 -30863699 + B1_Mur1 SINE Alu 12 147 -2 7 1536 287 291 145 28 chr4 124766457 124766602 -30863518 - RSINE1 SINE B4 -2 163 2 7 1536 450 220 120 7 chr4 124766913 124767055 -30863065 + RSINE1 SINE B4 8 165 0 7 1536 414 339 23 0 chr4 124767759 124767889 -30862231 - ID_B1 SINE B4 0 224 92 7 1536 752 257 38 11 chr4 124767931 124768116 -30862004 + B3A SINE B2 8 197 -1 7 1536 246 272 150 29 chr4 124768127 124768139 -30861981 + B4 SINE B4 81 191 -101 7 1536 470 167 26 69 chr4 124768139 124768235 -30861885 + PB1D9 SINE Alu 5 102 -18 7 1536 1592 150 34 199 chr4 124768235 124768279 -30861841 - ORR1D1 LTR MaLR 0 374 339 7 1536 1145 65 0 0 chr4 124768279 124768417 -30861703 + B1_Mus1 SINE Alu 3 140 -8 7 1536 1592 150 34 199 chr4 124768417 124768820 -30861300 - ORR1D1 LTR MaLR -36 338 1 7 1536 470 167 26 69 chr4 124768820 124768839 -30861281 + PB1D9 SINE Alu 103 115 -5 7 1536 246 272 150 29 chr4 124768839 124768851 -30861269 + B4 SINE B4 192 236 -56 7 1536 22 35 0 0 chr4 124769399 124769428 -30860692 + AT_rich Low_complexity Low_complexity 1 29 0 7 1536 291 127 0 52 chr4 124769428 124769486 -30860634 - PB1D10 SINE Alu 0 117 63 7 1536 940 215 39 20 chr4 124769646 124769850 -30860270 - B3 SINE B2 0 216 9 7 1536 331 278 0 108 chr4 124769956 124770085 -30860035 - PB1D9 SINE Alu -5 115 1 7 1536 349 265 10 194 chr4 124770085 124770174 -30859946 - ID SINE ID -160 64 13 7 1536 249 283 0 0 chr4 124770186 124770246 -30859874 - Lx8 LINE L1 -183 7290 7231 7 1536 439 249 147 20 chr4 124770338 124770535 -30859585 - Lx8 LINE L1 -370 7103 6882 7 1536 296 289 129 25 chr4 124770560 124770723 -30859397 - Lx8 LINE L1 -660 6813 6634 7 1536 242 284 59 0 chr4 124770771 124770873 -30859247 - Lx8 LINE L1 -920 6553 6446 7 1536 1159 68 14 0 chr4 124770929 124771075 -30859045 - B1_Mus1 SINE Alu 0 148 1 7 1536 429 252 18 53 chr4 124771104 124771217 -30858903 - PB1D7 SINE Alu -7 113 5 7 1536 665 257 7 7 chr4 124771251 124771400 -30858720 - B1_Mur1 SINE Alu 0 149 1 7 1536 1045 115 7 13 chr4 124771498 124771648 -30858472 - B1_Mur4 SINE Alu -1 149 1 7 1536 424 269 27 34 chr4 124771687 124771833 -30858287 - RSINE1 SINE B4 -18 147 3 7 1536 1542 47 21 0 chr4 124772544 124772735 -30857385 - B2_Mm2 SINE B2 0 195 1 7 1536 342 250 28 0 chr4 124772830 124772902 -30857218 + ID4 SINE ID 2 75 -8 7 1536 808 184 195 26 chr4 124772959 124773149 -30856971 - ID_B1 SINE B4 0 224 3 7 1536 276 281 103 10 chr4 124773616 124773713 -30856407 - ID_B1 SINE B4 -43 181 76 7 1536 259 130 22 0 chr4 124773941 124773987 -30856133 - L1_Rod LINE L1 -372 5475 5429 7 1536 281 177 241 0 chr4 124773990 124774069 -30856051 - PB1D9 SINE Alu -2 118 21 7 1536 1061 60 0 0 chr4 124774132 124774266 -30855854 - B1_Mus2 SINE Alu 0 147 14 7 1536 491 196 21 11 chr4 124774393 124774486 -30855634 - B1_Mur4 SINE Alu -16 134 41 7 1536 225 0 0 0 chr4 124774609 124774634 -30855486 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1536 296 306 222 21 chr4 124774637 124774873 -30855247 - B4A SINE B4 -8 284 1 7 1536 328 341 73 6 chr4 124774895 124775060 -30855060 - L1M2 LINE L1 -884 5259 5084 7 1536 216 67 0 0 chr4 124775090 124775120 -30855000 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1536 335 121 17 0 chr4 124775132 124775190 -30854930 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1536 345 250 82 18 chr4 124775236 124775346 -30854774 - B3A SINE B2 -23 175 59 7 1536 587 214 42 21 chr4 124775435 124775578 -30854542 - B1_Mur4 SINE Alu -1 149 4 7 1536 1419 58 15 31 chr4 124775626 124775822 -30854298 - B2_Mm2 SINE B2 -1 194 2 7 1536 497 96 43 0 chr4 124775917 124776011 -30854109 + (TTCTC)n Simple_repeat Simple_repeat 3 100 0 7 1536 536 188 58 74 chr4 124776011 124776132 -30853988 - PB1D9 SINE Alu 0 120 2 7 1536 643 247 157 0 chr4 124776166 124776344 -30853776 - B3 SINE B2 0 216 11 7 1536 1266 41 0 0 chr4 124776345 124776492 -30853628 + B1_Mus2 SINE Alu 1 147 0 7 1536 295 356 0 25 chr4 124776529 124776650 -30853470 - PB1D7 SINE Alu -2 118 1 7 1536 549 189 9 9 chr4 124776744 124776851 -30853269 - PB1D10 SINE Alu -2 115 9 7 1536 245 340 57 0 chr4 124776774 124776880 -30853240 - B4A SINE B4 -119 173 62 7 1536 472 266 9 0 chr4 124777205 124777314 -30852806 - PB1D10 SINE Alu -1 116 7 7 1536 354 279 0 31 chr4 124777231 124777327 -30852793 - ID_B1 SINE B4 -54 170 78 7 1536 539 151 9 28 chr4 124777326 124777435 -30852685 - B2_Mm2 SINE B2 -1 194 88 7 1536 532 317 107 40 chr4 124777426 124777679 -30852441 - B4 SINE B4 -11 281 12 7 1536 453 186 20 30 chr4 124777686 124777786 -30852334 - B1F2 SINE Alu -2 147 49 7 1536 237 33 0 0 chr4 124777798 124777828 -30852292 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1536 238 286 107 0 chr4 124778033 124778145 -30851975 + B4 SINE B4 85 208 -84 7 1536 329 200 43 0 chr4 124778120 124778190 -30851930 - B1F SINE Alu -29 120 48 7 1536 195 42 0 0 chr4 124778371 124778395 -30851725 + (ATG)n Simple_repeat Simple_repeat 3 26 0 7 1536 494 259 9 0 chr4 124778398 124778506 -30851614 - PB1D10 SINE Alu -8 109 1 7 1536 328 287 113 0 chr4 124778705 124778820 -30851300 + RSINE1 SINE B4 14 141 -24 7 1536 617 279 96 0 chr4 124778910 124779107 -30851013 - ORR1D2 LTR MaLR -151 219 4 7 1536 530 237 97 113 chr4 124779180 124779375 -30850745 + B3A SINE B2 1 192 -6 7 1536 630 238 41 31 chr4 124779557 124779605 -30850515 - B3A SINE B2 0 198 155 7 1536 324 102 0 0 chr4 124779605 124779654 -30850466 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1536 630 238 41 31 chr4 124779654 124779800 -30850320 - B3A SINE B2 -44 154 2 7 1537 309 53 35 18 chr4 124781162 124781219 -30848901 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 7 1537 1021 147 96 6 chr4 124781429 124781607 -30848513 - B2_Mm2 SINE B2 0 195 2 7 1537 716 213 184 43 chr4 124781637 124781892 -30848228 + B4A SINE B4 2 292 0 7 1537 257 185 15 0 chr4 124781892 124781957 -30848163 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1537 1325 98 16 0 chr4 124781979 124782162 -30847958 - B2_Mm2 SINE B2 -9 186 1 7 1537 210 37 0 0 chr4 124782629 124782656 -30847464 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 7 1537 317 278 133 10 chr4 124783200 124783298 -30846822 - PB1D7 SINE Alu -7 113 4 7 1537 528 45 0 0 chr4 124783486 124783553 -30846567 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1537 241 311 14 0 chr4 124783913 124783987 -30846133 + ID_B1 SINE B4 83 157 -67 7 1537 347 276 8 103 chr4 124783922 124784039 -30846081 + PB1D10 SINE Alu 11 116 -1 7 1537 537 16 0 0 chr4 124784348 124784410 -30845710 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 7 1537 238 106 43 0 chr4 124784511 124784558 -30845562 + (CCCCCA)n Simple_repeat Simple_repeat 1 49 0 7 1537 430 226 75 0 chr4 124785830 124785936 -30844184 + B1_Mur1 SINE Alu 35 148 -1 7 1537 748 86 393 0 chr4 124786122 124786262 -30843858 - B2_Mm2 SINE B2 0 195 1 7 1537 378 0 0 0 chr4 124786441 124786483 -30843637 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 7 1537 209 125 0 24 chr4 124786967 124787008 -30843112 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 7 1537 258 304 38 0 chr4 124788184 124788263 -30841857 - ID2 SINE ID -1 82 1 7 1537 647 278 92 25 chr4 124788509 124788705 -30841415 + ID_B1 SINE B4 14 222 -2 7 1537 320 218 128 0 chr4 124788925 124789003 -30841117 + B1F1 SINE Alu 1 88 -61 7 1537 483 33 0 0 chr4 124789913 124789974 -30840146 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1537 326 257 0 19 chr4 124789986 124790093 -30840027 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1537 414 293 12 48 chr4 124790301 124790466 -30839654 + Charlie7a DNA MER1_type 34 192 -80 7 1537 1342 103 0 5 chr4 124791233 124791418 -30838702 - B2_Mm2 SINE B2 -10 185 2 7 1537 304 181 12 12 chr4 124791483 124791567 -30838553 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1537 208 262 79 56 chr4 124794017 124794106 -30836014 + MIRc SINE MIR 32 122 -146 7 1537 658 251 61 6 chr4 124794228 124794392 -30835728 - ID_B1 SINE B4 0 224 52 7 1537 549 280 85 25 chr4 124795010 124795245 -30834875 - MIRb SINE MIR -13 255 5 7 1537 1342 97 43 0 chr4 124795684 124795869 -30834251 - B2_Mm2 SINE B2 0 195 3 7 1537 1221 75 98 0 chr4 124798752 124798926 -30831194 - B2_Mm2 SINE B2 -2 193 3 7 1537 198 71 0 0 chr4 124801436 124801464 -30828656 + (CACCC)n Simple_repeat Simple_repeat 2 29 0 7 1537 336 24 0 0 chr4 124802103 124802144 -30827976 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1537 1099 89 7 7 chr4 124803260 124803407 -30826713 - B1_Mus2 SINE Alu 0 147 1 8 1537 237 309 98 32 chr4 124804419 124804610 -30825510 - MIRb SINE MIR -38 224 23 8 1537 377 284 8 41 chr4 124805793 124805914 -30824206 - PB1D7 SINE Alu 0 120 4 8 1537 1208 68 0 0 chr4 124805986 124806133 -30823987 + B1_Mus2 SINE Alu 1 147 0 8 1537 855 207 38 24 chr4 124806561 124806774 -30823346 - B3 SINE B2 0 216 1 8 1537 360 0 0 0 chr4 124806816 124806856 -30823264 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 8 1537 1194 43 0 0 chr4 124806856 124806995 -30823125 - B1_Mus1 SINE Alu -9 139 1 8 1537 549 226 155 0 chr4 124806997 124807152 -30822968 - B3 SINE B2 -36 180 2 8 1537 479 293 29 0 chr4 124807154 124807294 -30822826 - ID_B1 SINE B4 -1 223 80 8 1537 1088 73 0 0 chr4 124807330 124807466 -30822654 + B1_Mus2 SINE Alu 1 136 -11 8 1537 501 17 0 0 chr4 124807466 124807524 -30822596 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 8 1537 1203 55 7 0 chr4 124807693 124807839 -30822281 + B1_Mus2 SINE Alu 1 147 0 8 1537 372 112 0 11 chr4 124807936 124808008 -30822112 - B1_Mur4 SINE Alu -79 71 2 8 1537 1147 61 0 13 chr4 124808059 124808209 -30821911 + B1_Mus1 SINE Alu 1 148 0 8 1537 202 87 43 0 chr4 124808211 124808257 -30821863 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1537 321 304 22 0 chr4 124808257 124808349 -30821771 - PB1D10 SINE Alu -16 101 8 8 1537 278 355 27 18 chr4 124808263 124808375 -30821745 - ID_B1 SINE B4 -48 176 64 8 1537 223 366 14 76 chr4 124809387 124809532 -30820588 - B3A SINE B2 -62 136 1 8 1537 370 279 1 12 chr4 124809441 124809533 -30820587 - RSINE1 SINE B4 -201 91 1 8 1537 1117 82 129 6 chr4 124809546 124809717 -30820403 - B2_Mm1t SINE B2 0 193 2 8 1537 682 229 39 0 chr4 124809749 124809902 -30820218 - B3 SINE B2 0 216 58 8 1537 293 224 0 0 chr4 124810040 124810098 -30820022 - B1_Mur2 SINE Alu -1 148 91 8 1537 911 103 14 0 chr4 124810100 124810245 -30819875 - URR1A DNA MER1_type 0 226 80 8 1537 347 302 0 86 chr4 124810268 124810373 -30819747 - B1F2 SINE Alu -53 96 1 8 1537 818 223 30 50 chr4 124810601 124810799 -30819321 + B3 SINE B2 1 194 -22 8 1537 229 197 15 15 chr4 124810799 124810866 -30819254 + CT-rich Low_complexity Low_complexity 1 67 0 8 1537 512 240 104 0 chr4 124810881 124811006 -30819114 - B1_Mur1 SINE Alu 0 149 12 8 1537 321 26 0 0 chr4 124811018 124811056 -30819064 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 8 1537 483 123 0 0 chr4 124811124 124811205 -30818915 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1537 255 125 0 0 chr4 124811694 124811734 -30818386 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 8 1537 450 53 0 0 chr4 124812217 124812274 -30817846 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 8 1537 333 118 0 0 chr4 124812265 124812316 -30817804 + (T)n Simple_repeat Simple_repeat 1 51 0 8 1537 1103 68 13 40 chr4 124812316 124812468 -30817652 - B1_Mus1 SINE Alu 0 148 1 8 1537 730 243 97 0 chr4 124813475 124813660 -30816460 - ID_B1 SINE B4 -2 222 20 8 1537 297 299 73 35 chr4 124813762 124813925 -30816195 - MIR3 SINE MIR -92 170 4 8 1537 538 292 91 10 chr4 124814194 124814391 -30815729 + RCHARR1 DNA MER1_type 269 481 -493 8 1537 1268 34 0 0 chr4 124814468 124814614 -30815506 + B1_Mus2 SINE Alu 1 146 -1 8 1537 1096 58 141 0 chr4 124814626 124814782 -30815338 - B2_Mm2 SINE B2 -15 180 3 8 1537 436 252 146 0 chr4 124814814 124814937 -30815183 + B1_Mur2 SINE Alu 1 141 -8 8 1537 1216 247 74 29 chr4 124814950 124815300 -30814820 + RCHARR1 DNA MER1_type 484 849 -125 8 1537 411 21 0 0 chr4 124815304 124815352 -30814768 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1537 545 261 15 0 chr4 124815357 124815487 -30814633 - RSINE1 SINE B4 -32 133 2 8 1537 397 359 154 14 chr4 124815488 124815903 -30814217 - Charlie21a DNA MER1_type -225 988 516 8 1537 427 192 124 9 chr4 124816083 124816188 -30813932 - PB1D7 SINE Alu -2 118 2 8 1537 413 265 170 88 chr4 124816250 124816391 -30813729 - B3A SINE B2 0 198 35 8 1537 1430 81 38 0 chr4 124816391 124816576 -30813544 + B2_Mm2 SINE B2 2 193 -2 8 1537 413 265 170 88 chr4 124816576 124816616 -30813504 - B3A SINE B2 -164 34 2 8 1537 502 196 10 0 chr4 124816628 124816725 -30813395 + MTC LTR MaLR 1 98 -323 8 1537 466 132 0 13 chr4 124816725 124816802 -30813318 + PB1D9 SINE Alu 1 76 -44 8 1537 363 44 0 0 chr4 124816806 124816851 -30813269 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 8 1537 1708 146 70 16 chr4 124816866 124817179 -30812941 + MTC LTR MaLR 84 413 -8 8 1537 305 269 40 114 chr4 124817174 124817190 -30812930 + RLTR21 LTR ERVK 1090 1098 -474 8 1537 1155 44 0 0 chr4 124817190 124817326 -30812794 + B1_Mus2 SINE Alu 2 137 -10 8 1537 324 0 0 0 chr4 124817326 124817362 -30812758 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1537 305 269 40 114 chr4 124817362 124817520 -30812600 + RLTR21 LTR ERVK 1099 1251 -321 8 1537 227 217 29 0 chr4 124817536 124817605 -30812515 + (TATG)n Simple_repeat Simple_repeat 2 72 0 8 1537 918 301 34 34 chr4 124817610 124817902 -30812218 - B4 SINE B4 0 292 1 8 1537 480 77 0 0 chr4 124817954 124818019 -30812101 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1537 223 296 14 0 chr4 124818019 124818090 -30812030 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 1537 334 338 63 31 chr4 124818113 124818272 -30811848 - RSINE1 SINE B4 0 165 2 8 1537 370 297 15 52 chr4 124818287 124818422 -30811698 - ID_B1 SINE B4 -11 213 84 8 1537 199 0 65 0 chr4 124818725 124818756 -30811364 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1537 412 225 35 35 chr4 124818842 124818957 -30811163 - B2_Mm1t SINE B2 -14 179 65 8 1537 600 229 6 22 chr4 124818983 124819166 -30810954 + CT-rich Low_complexity Low_complexity 1 180 0 8 1537 729 0 0 0 chr4 124819166 124819247 -30810873 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 8 1537 1062 84 19 0 chr4 124819247 124819402 -30810718 - B2_Mm1a SINE B2 -35 158 1 8 1537 613 82 0 0 chr4 124819402 124819485 -30810635 - B2_Mm2 SINE B2 -112 83 1 8 1537 385 268 0 0 chr4 124819498 124819580 -30810540 + ID4 SINE ID 2 83 0 8 1537 767 212 2 1 chr4 124819653 124819792 -30810328 + B3 SINE B2 5 147 -46 8 1537 549 90 0 0 chr4 124819792 124819881 -30810239 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 1537 383 245 119 77 chr4 124819881 124819909 -30810211 + B2_Mm1a SINE B2 148 179 -14 8 1537 985 120 35 0 chr4 124819918 124820060 -30810060 - B1_Mus1 SINE Alu 0 148 2 8 1537 771 255 46 32 chr4 124820083 124820302 -30809818 + ID_B1 SINE B4 1 222 -2 8 1537 948 231 43 5 chr4 124821272 124821481 -30808639 - ID_B1 SINE B4 -7 217 1 8 1537 581 211 94 0 chr4 124821490 124821618 -30808502 - B1F SINE Alu -6 143 4 8 1537 578 14 14 0 chr4 124823169 124823240 -30806880 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1537 207 196 13 47 chr4 124824266 124824416 -30805704 + GA-rich Low_complexity Low_complexity 4 148 0 8 1537 244 267 0 26 chr4 124824417 124824494 -30805626 + G-rich Low_complexity Low_complexity 5 79 0 8 1537 306 190 18 48 chr4 124824496 124824662 -30805458 + GA-rich Low_complexity Low_complexity 1 161 0 8 1537 247 348 0 0 chr4 124824662 124824731 -30805389 + polypurine Low_complexity Low_complexity 4 72 0 8 1537 185 365 0 0 chr4 124825526 124825589 -30804531 - MIR SINE MIR -98 110 48 8 1537 705 228 69 35 chr4 124825683 124825856 -30804264 - B3A SINE B2 -16 182 4 8 1537 430 288 25 8 chr4 124826112 124826231 -30803889 + RSINE1 SINE B4 3 123 -42 8 1537 477 0 0 0 chr4 124826339 124826392 -30803728 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 1537 224 196 21 42 chr4 124826395 124826443 -30803677 - RSINE1 SINE B4 -34 131 85 8 1537 464 292 13 83 chr4 124826473 124826630 -30803490 - B4A SINE B4 -145 147 2 8 1537 332 310 81 31 chr4 124826637 124826797 -30803323 - MIR SINE MIR -68 194 27 8 1537 471 237 88 0 chr4 124828993 124829107 -30801013 + ORR1E LTR MaLR 1 124 -235 8 1537 180 0 0 0 chr4 124829107 124829127 -30800993 + (CAGGA)n Simple_repeat Simple_repeat 2 21 0 8 1537 1614 244 47 37 chr4 124829127 124829591 -30800529 - RMER19C LTR ERVK 0 611 143 8 1537 904 230 100 0 chr4 124829811 124830011 -30800109 + ID_B1 SINE B4 2 221 -3 8 1537 1191 62 7 0 chr4 124830014 124830160 -30799960 + B1_Mus2 SINE Alu 1 147 0 8 1537 206 97 46 46 chr4 124830160 124830225 -30799895 + A-rich Low_complexity Low_complexity 4 68 0 8 1537 1438 73 5 25 chr4 124831741 124831938 -30798182 - B2_Mm2 SINE B2 -2 193 1 8 1537 510 273 80 0 chr4 124831941 124832091 -30798029 - B3A SINE B2 -10 188 27 8 1537 1230 55 0 0 chr4 124832107 124832253 -30797867 - B1_Mm SINE Alu 0 147 2 8 1537 285 29 0 0 chr4 124832341 124832375 -30797745 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1537 1193 43 0 7 chr4 124832379 124832520 -30797600 - B1_Mus2 SINE Alu -6 141 2 8 1537 442 262 84 0 chr4 124832520 124832627 -30797493 - RSINE1 SINE B4 -3 162 47 8 1537 453 288 17 0 chr4 124832692 124832810 -30797310 - PB1D7 SINE Alu 0 120 1 8 1537 807 132 22 0 chr4 124832828 124832964 -30797156 - B1_Mus2 SINE Alu 0 147 9 8 1537 22 35 0 0 chr4 124832969 124832998 -30797122 + AT_rich Low_complexity Low_complexity 1 29 0 8 1537 273 240 110 30 chr4 124833001 124833101 -30797019 - B3A SINE B2 0 216 110 8 1537 631 322 66 18 chr4 124833190 124833525 -30796595 - L1MB3 LINE L1 -219 5964 5614 8 1537 1521 65 19 0 chr4 124833996 124834211 -30795909 + RMER17D2 LTR ERVK 1 219 -590 8 1537 3257 151 68 4 chr4 124834682 124835222 -30794898 - RMER15 LTR ERVL 0 575 1 9 1537 188 328 14 29 chr4 124835754 124835823 -30794297 - MIR SINE MIR -22 240 173 9 1537 382 297 122 49 chr4 124836538 124836743 -30793377 + MIR SINE MIR 14 233 -29 9 1537 970 100 57 0 chr4 124837120 124837260 -30792860 - B1_Mus1 SINE Alu 0 148 1 9 1537 654 161 18 0 chr4 124837264 124837376 -30792744 - B1_Mur2 SINE Alu 0 149 36 9 1537 261 222 128 43 chr4 124837309 124837403 -30792717 - MT2B LTR ERVL -345 256 155 9 1537 334 281 96 7 chr4 124837400 124837536 -30792584 - B1F SINE Alu -1 148 1 9 1537 450 143 13 13 chr4 124837576 124837654 -30792466 - PB1 SINE Alu -20 107 30 9 1537 270 348 29 15 chr4 124837925 124838062 -30792058 + MER5B DNA MER1_type 2 140 -38 9 1537 288 0 0 0 chr4 124838475 124838507 -30791613 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1537 252 0 0 0 chr4 124838507 124838534 -30791586 + (GA)n Simple_repeat Simple_repeat 2 29 0 9 1537 434 231 120 0 chr4 124839066 124839174 -30790946 + MTEa LTR MaLR 12 132 -247 9 1537 514 288 40 75 chr4 124839189 124839362 -30790758 + B3A SINE B2 2 168 -48 9 1537 493 299 106 5 chr4 124839387 124839575 -30790545 + MTEa LTR MaLR 173 379 0 9 1537 2952 126 23 42 chr4 124841793 124842314 -30787806 - RLTR11A LTR ERVK -17 511 1 9 1537 729 279 63 81 chr4 124842376 124842847 -30787273 + L1MA4 LINE L1 5565 6015 -288 9 1537 958 137 66 44 chr4 124843027 124843210 -30786910 + B2_Mm2 SINE B2 2 188 -7 9 1537 260 53 26 0 chr4 124843242 124843280 -30786840 + (AGGGGG)n Simple_repeat Simple_repeat 6 44 0 9 1537 538 291 32 56 chr4 124843281 124843532 -30786588 + RLTR15 LTR ERVK 99 343 -16 9 1537 297 0 0 0 chr4 124843646 124843679 -30786441 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 9 1537 688 172 28 71 chr4 124843679 124843851 -30786269 - B2_Mm2 SINE B2 -37 179 1 9 1537 1097 156 47 21 chr4 124845053 124845243 -30784877 - B2_Mm2 SINE B2 0 195 1 9 1537 544 276 0 0 chr4 124845271 124845398 -30784722 + ID_B1 SINE B4 85 211 -13 9 1537 573 15 0 0 chr4 124845489 124845555 -30784565 + (GGGAGA)n Simple_repeat Simple_repeat 3 68 0 9 1537 395 161 24 36 chr4 124846028 124846112 -30784008 - B1_Mur4 SINE Alu -67 83 1 9 1537 194 234 45 30 chr4 124846721 124846787 -30783333 - MIR SINE MIR -145 117 51 9 1537 210 338 40 0 chr4 124847162 124847236 -30782884 - RSINE1 SINE B4 -11 154 78 9 1537 459 308 15 70 chr4 124847234 124847433 -30782687 - B4 SINE B4 -104 188 1 9 1537 226 236 0 18 chr4 124847583 124847639 -30782481 - B4 SINE B4 0 292 238 9 1537 405 0 0 0 chr4 124847653 124847698 -30782422 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1537 912 239 41 36 chr4 124847894 124848115 -30782005 - ID_B1 SINE B4 -1 223 2 9 1537 255 275 48 91 chr4 124848846 124849049 -30781071 + MIRb SINE MIR 3 200 -68 9 1537 660 227 162 6 chr4 124849747 124849920 -30780200 - RMER30 DNA MER1_type -1 201 2 9 1537 302 336 26 0 chr4 124851254 124851367 -30778753 + MIR SINE MIR 1 116 -146 9 1537 322 221 0 38 chr4 124851476 124851556 -30778564 - B4 SINE B4 -2 290 214 9 1537 214 246 200 0 chr4 124851619 124851684 -30778436 - B3A SINE B2 -22 176 99 9 1537 195 162 0 0 chr4 124851701 124851738 -30778382 + (CAA)n Simple_repeat Simple_repeat 2 38 0 9 1537 324 316 52 0 chr4 124851789 124851925 -30778195 - MER3 DNA MER1_type -57 152 10 9 1537 228 335 52 0 chr4 124852379 124852497 -30777623 + MIRb SINE MIR 58 182 -80 9 1537 295 275 12 0 chr4 124852741 124852821 -30777299 - ID4 SINE ID -1 82 2 9 1537 2638 121 17 0 chr4 124853040 124853445 -30776675 + MTC LTR MaLR 10 421 0 9 1537 295 257 25 0 chr4 124854576 124854654 -30775466 - B1F SINE Alu -61 88 2 9 1537 1389 53 0 0 chr4 124854668 124854896 -30775224 + (TG)n Simple_repeat Simple_repeat 1 228 0 9 1537 624 296 104 19 chr4 124854898 124855166 -30774954 - B4A SINE B4 0 292 2 9 1537 204 125 0 0 chr4 124855544 124855576 -30774544 + (TGG)n Simple_repeat Simple_repeat 2 33 0 9 1537 1001 70 0 14 chr4 124855577 124855710 -30774410 + B1_Mus1 SINE Alu 6 137 -11 9 1537 248 0 0 30 chr4 124855710 124855743 -30774377 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 9 1537 1001 70 0 14 chr4 124855743 124855754 -30774366 + B1_Mus1 SINE Alu 138 148 0 9 1537 1207 102 90 0 chr4 124855754 124855931 -30774189 + B2_Mm2 SINE B2 3 195 0 9 1537 244 276 26 13 chr4 124855977 124856054 -30774066 - MIRc SINE MIR -169 99 22 9 1537 663 282 82 19 chr4 124856080 124856337 -30773783 + Helitron2Na_Mam RC Helitron? 11 283 -41 9 1537 1122 68 0 0 chr4 124856431 124856579 -30773541 + (TCCA)n Simple_repeat Simple_repeat 4 151 0 9 1537 890 205 58 0 chr4 124856609 124856799 -30773321 - B3 SINE B2 -3 213 13 9 1537 191 212 12 0 chr4 124857443 124857523 -30772597 + (TCCA)n Simple_repeat Simple_repeat 2 82 0 9 1537 314 206 27 0 chr4 124857537 124857610 -30772510 - B3 SINE B2 -3 213 139 9 1537 456 19 0 0 chr4 124857615 124857668 -30772452 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1537 384 22 0 0 chr4 124857668 124857712 -30772408 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 1537 449 355 102 0 chr4 124857775 124857961 -30772159 - B4A SINE B4 -6 286 82 9 1537 383 206 0 0 chr4 124858026 124858094 -30772026 - B4A SINE B4 -201 91 24 9 1537 254 284 0 26 chr4 124858031 124858107 -30772013 - ID4 SINE ID 0 83 10 9 1537 427 216 103 0 chr4 124858288 124858385 -30771735 - PB1D10 SINE Alu -8 109 3 9 1537 742 125 50 29 chr4 124858723 124858863 -30771257 - B1_Mus1 SINE Alu 0 148 6 9 1537 896 245 25 0 chr4 124858889 124859093 -30771027 - B3 SINE B2 -7 209 1 9 1537 1010 76 12 12 chr4 124859257 124859417 -30770703 + (TTTC)n Simple_repeat Simple_repeat 4 163 0 9 1537 220 324 54 0 chr4 124859629 124859703 -30770417 - B4 SINE B4 -123 169 92 9 1537 244 325 0 46 chr4 124859767 124859854 -30770266 - B4 SINE B4 -195 97 15 9 1537 348 160 10 15 chr4 124860046 124860125 -30769995 - PB1D10 SINE Alu 0 149 53 9 1537 643 260 23 12 chr4 124860225 124860396 -30769724 - MER117 DNA MER1_type -21 176 4 9 1537 624 210 0 32 chr4 124860766 124861141 -30768979 + (CA)n Simple_repeat Simple_repeat 1 362 0 9 1537 318 280 0 51 chr4 124861218 124861297 -30768823 - ID4_ SINE ID -1 82 8 9 1537 196 253 129 24 chr4 124861843 124861928 -30768192 - MIR SINE MIR -59 203 110 9 1537 306 0 0 0 chr4 124862261 124862295 -30767825 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1537 279 0 0 0 chr4 124862295 124862325 -30767795 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1537 396 0 0 0 chr4 124862610 124862654 -30767466 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 9 1537 186 191 0 0 chr4 124864021 124864068 -30766052 + (CATG)n Simple_repeat Simple_repeat 1 47 0 9 1537 1443 85 26 0 chr4 124864278 124864467 -30765653 + B2_Mm2 SINE B2 2 195 0 9 1537 356 212 37 13 chr4 124864487 124864596 -30765524 + MIRc SINE MIR 59 166 -110 9 1537 402 343 23 37 chr4 124864667 124864885 -30765235 - MIR SINE MIR 0 262 48 9 1537 1366 105 11 5 chr4 124864892 124865083 -30765037 - B2_Mm2 SINE B2 0 195 4 9 1537 207 0 0 0 chr4 124866241 124866264 -30763856 + (CAG)n Simple_repeat Simple_repeat 1 23 0 9 1537 397 274 57 0 chr4 124867598 124867704 -30762416 + PB1 SINE Alu 2 113 -14 9 1537 639 39 0 0 chr4 124867705 124867783 -30762337 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1537 443 270 179 31 chr4 124867785 124867980 -30762140 - MIR SINE MIR -11 251 28 9 1537 350 180 0 0 chr4 124869125 124869186 -30760934 + RLTR40 LTR ERVK 2 62 -755 9 1537 1897 166 94 35 chr4 124869187 124869644 -30760476 + RLTR40 LTR ERVK 187 670 -147 9 1537 180 0 0 0 chr4 124869669 124869689 -30760431 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 9 1537 203 159 41 55 chr4 124869708 124869768 -30760352 + (CAGA)n Simple_repeat Simple_repeat 1 60 0 9 1537 219 103 0 0 chr4 124869768 124869807 -30760313 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1537 203 159 41 55 chr4 124869807 124869819 -30760301 + (CAGA)n Simple_repeat Simple_repeat 1 12 0 9 1537 409 194 12 18 chr4 124869822 124869990 -30760130 + (CA)n Simple_repeat Simple_repeat 1 167 0 9 1537 694 231 163 26 chr4 124869993 124870220 -30759900 + RLTR40 LTR ERVK 544 801 -16 9 1537 293 223 40 50 chr4 124870229 124870328 -30759792 + ID_B1 SINE B4 126 223 -1 9 1537 188 86 29 0 chr4 124870330 124870365 -30759755 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1537 369 0 0 0 chr4 124870461 124870502 -30759618 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1537 672 210 47 47 chr4 124870503 124870653 -30759467 - B3A SINE B2 -48 150 1 9 1537 425 361 23 35 chr4 124870660 124870832 -30759288 - MIR SINE MIR -75 187 18 9 1537 842 234 83 0 chr4 124870912 124871117 -30759003 + ID_B1 SINE B4 2 223 -1 9 1537 219 114 0 0 chr4 124871145 124871180 -30758940 + (CATA)n Simple_repeat Simple_repeat 3 37 0 9 1537 203 195 0 0 chr4 124871343 124871384 -30758736 - MIRc SINE MIR -120 148 108 9 1537 317 207 11 0 chr4 124871662 124871749 -30758371 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 1537 406 0 37 0 chr4 124871930 124871984 -30758136 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 1537 219 200 22 0 chr4 124872613 124872658 -30757462 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 9 1537 199 343 99 50 chr4 124872874 124873015 -30757105 + MIR SINE MIR 39 186 -76 9 1537 293 301 170 35 chr4 124874365 124874568 -30755552 + MIR SINE MIR 42 258 -4 9 1537 522 197 188 7 chr4 124874821 124874959 -30755161 + RSINE1 SINE B4 3 165 0 9 1537 211 234 43 0 chr4 124874963 124875010 -30755110 + (CACG)n Simple_repeat Simple_repeat 1 49 0 1 1537 435 300 97 11 chr4 124875042 124875244 -30754876 - ORR1E LTR MaLR -79 300 57 1 1537 201 154 0 0 chr4 124875244 124875283 -30754837 + G-rich Low_complexity Low_complexity 1 39 0 1 1537 444 19 0 0 chr4 124876795 124876848 -30753272 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1537 265 314 28 35 chr4 124877892 124878037 -30752083 + MIRc SINE MIR 21 164 -104 1 1537 180 152 0 0 chr4 124878693 124878726 -30751394 + MIRc SINE MIR 112 144 -124 1 1537 324 331 26 79 chr4 124879342 124879532 -30750588 + MER58A DNA MER1_type 30 209 -15 1 1537 768 265 2 7 chr4 124879538 124879740 -30750380 + B3A SINE B2 1 202 -14 1 1537 332 43 22 0 chr4 124879746 124879792 -30750328 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1537 392 335 25 13 chr4 124879831 124879988 -30750132 - MER5A DNA MER1_type -1 188 30 1 1537 502 255 51 25 chr4 124880002 124880159 -30749961 - ID_B1 SINE B4 -2 222 62 1 1537 22 0 0 0 chr4 124882188 124882210 -30747910 + AT_rich Low_complexity Low_complexity 1 22 0 1 1537 645 200 0 0 chr4 124882254 124882374 -30747746 - RSINE1 SINE B4 -35 130 11 1 1537 455 266 46 0 chr4 124882407 124882516 -30747604 - PB1D10 SINE Alu -3 114 1 1 1537 595 306 33 39 chr4 124882586 124882938 -30747182 - L1MA4 LINE L1 -263 6037 5689 1 1537 342 0 0 0 chr4 124883164 124883202 -30746918 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1537 939 192 80 0 chr4 124883234 124883421 -30746699 - ID_B1 SINE B4 -17 207 6 1 1537 413 284 78 47 chr4 124883454 124883646 -30746474 - MER33 DNA MER1_type -126 198 1 1 1537 262 230 194 19 chr4 124883694 124883849 -30746271 - L1ME2 LINE L1 -167 5997 5816 1 1537 921 228 75 23 chr4 124883858 124884123 -30745997 - B4A SINE B4 -12 280 2 1 1537 220 289 0 0 chr4 124884550 124884602 -30745518 - L2b LINE L2 -217 3158 3107 1 1537 597 224 171 0 chr4 124886134 124886286 -30743834 - ID_B1 SINE B4 -44 180 3 1 1537 273 57 0 0 chr4 124886299 124886334 -30743786 + (TCG)n Simple_repeat Simple_repeat 2 36 0 1 1537 424 266 91 0 chr4 124886336 124886455 -30743665 - B1F SINE Alu -20 129 1 1 1537 555 249 197 6 chr4 124886476 124886631 -30743489 + B3 SINE B2 3 184 -32 1 1537 228 122 0 0 chr4 124886631 124886672 -30743448 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1537 555 249 197 6 chr4 124886672 124886694 -30743426 + B3 SINE B2 185 212 -4 1 1537 671 278 0 0 chr4 124886700 124886851 -30743269 - RSINE1 SINE B4 0 165 15 1 1537 236 329 0 24 chr4 124886779 124886863 -30743257 - B3 SINE B2 -131 85 4 1 1537 1152 81 0 26 chr4 124886878 124886892 -30743228 - B1_Mus1 SINE Alu 0 148 138 1 1537 207 0 0 0 chr4 124886892 124886915 -30743205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1537 1152 81 0 26 chr4 124886915 124887052 -30743068 - B1_Mus1 SINE Alu -11 137 1 1 1537 228 254 45 0 chr4 124887778 124887845 -30742275 + L1MD3 LINE L1 7907 7976 -19 1 1537 469 263 36 36 chr4 124887851 124887989 -30742131 + RSINE1 SINE B4 4 141 -24 1 1537 209 214 17 67 chr4 124888096 124888156 -30741964 + MIRc SINE MIR 69 125 -143 1 1537 442 291 108 6 chr4 124888998 124889174 -30740946 + RMER30 DNA MER1_type 2 195 -7 1 1537 338 333 161 5 chr4 124889244 124889437 -30740683 + RMER15 LTR ERVL 353 575 0 1 1537 219 114 0 0 chr4 124890001 124890036 -30740084 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 1 1537 213 328 23 8 chr4 124890036 124890104 -30740016 - BC1_Mm scRNA scRNA -21 131 62 1 1537 306 0 0 0 chr4 124890104 124890138 -30739982 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1537 379 133 0 0 chr4 124890138 124890198 -30739922 - ID4 SINE ID -23 60 1 1 1537 232 300 68 68 chr4 124890140 124890258 -30739862 - ZP3AR Satellite Satellite -55 157 40 1 1537 180 0 0 0 chr4 124891079 124891099 -30739021 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1537 478 274 17 0 chr4 124891984 124892101 -30738019 + B4A SINE B4 1 119 -173 1 1537 774 219 67 5 chr4 124892517 124892710 -30737410 + B4A SINE B4 88 292 0 1 1537 344 191 0 11 chr4 124892734 124892824 -30737296 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1537 301 68 0 22 chr4 124892824 124892869 -30737251 + HAL1-3A_ME LINE L1 1979 2022 -836 1 1537 247 248 81 54 chr4 124893563 124893674 -30736446 + RLTR14 LTR ERV1 224 337 -45 1 1537 300 91 0 0 chr4 124894068 124894112 -30736008 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1537 192 179 0 0 chr4 124894257 124894296 -30735824 + G-rich Low_complexity Low_complexity 1 39 0 1 1537 339 322 67 8 chr4 124894298 124894417 -30735703 - RSINE1 SINE B4 -38 127 2 1 1537 233 267 122 0 chr4 124894718 124894808 -30735312 - B1F1 SINE Alu -38 111 11 1 1537 1954 229 35 11 chr4 124894882 124895346 -30734774 - Kanga2_a DNA Tc2 -380 508 34 1 1537 239 381 39 34 chr4 124895568 124895747 -30734373 - RMER30 DNA MER1_type -22 180 1 1 1537 228 312 0 13 chr4 124896619 124896697 -30733423 - MLT1M LTR MaLR -466 206 130 1 1537 1482 214 99 6 chr4 124896765 124897108 -30733012 - MTEa LTR MaLR -4 375 1 1 1537 947 238 9 9 chr4 124897143 124897359 -30732761 - B3 SINE B2 0 216 1 1 1537 184 333 13 0 chr4 124898280 124898355 -30731765 - MIRc SINE MIR -125 143 68 1 1537 208 180 39 39 chr4 124899027 124899079 -30731041 + (CATG)n Simple_repeat Simple_repeat 3 54 0 1 1537 519 207 64 32 chr4 124899363 124899488 -30730632 - RSINE1 SINE B4 -26 139 11 1 1537 200 143 0 23 chr4 124899488 124899531 -30730589 + CT-rich Low_complexity Low_complexity 1 42 0 1 1537 405 167 284 0 chr4 124899531 124899633 -30730487 - ID_B1 SINE B4 -8 216 86 1 1537 502 171 0 12 chr4 124899830 124899913 -30730207 + ID4 SINE ID 2 83 0 1 1537 210 37 0 0 chr4 124899946 124899973 -30730147 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1537 870 261 113 15 chr4 124900754 124901019 -30729101 + B4A SINE B4 1 291 -1 1 1537 201 256 0 0 chr4 124901937 124901976 -30728144 + polypyrimidine Low_complexity Low_complexity 2 40 0 1 1537 1168 122 164 0 chr4 124902946 124903135 -30726985 - URR1B DNA MER1_type -4 221 2 1 1537 267 204 10 31 chr4 124903295 124903391 -30726729 + CT-rich Low_complexity Low_complexity 2 95 0 1 1537 591 198 8 33 chr4 124903391 124903511 -30726609 - PB1D10 SINE Alu 0 117 1 1 1537 402 264 34 15 chr4 124903580 124903724 -30726396 - MIR SINE MIR -118 158 16 1 1537 276 379 63 25 chr4 124903734 124903972 -30726148 + MIRb SINE MIR 15 261 -7 1 1537 555 247 0 120 chr4 124904552 124904727 -30725393 - B3A SINE B2 0 198 45 1 1537 545 294 110 18 chr4 124905082 124905300 -30724820 - MIR SINE MIR -14 248 11 1 1537 2334 82 24 62 chr4 124905489 124905828 -30724292 - ORR1A3 LTR MaLR 0 326 1 1 1537 889 284 49 61 chr4 124906338 124906683 -30723437 - Charlie16a DNA MER1_type 0 342 2 1 1537 203 316 0 48 chr4 124906798 124906881 -30723239 + G-rich Low_complexity Low_complexity 5 83 0 1 1537 1537 230 53 8 chr4 124908106 124908461 -30721659 - MTE2a LTR MaLR -7 372 2 1 1537 372 211 13 0 chr4 124908564 124908640 -30721480 + MIR SINE MIR 108 184 -78 1 1537 269 220 51 0 chr4 124908813 124908872 -30721248 - ID4 SINE ID -8 75 14 1 1537 414 0 0 0 chr4 124909747 124909793 -30720327 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1537 271 371 84 66 chr4 124909977 124910251 -30719869 - L2b LINE L2 -2 3373 3095 1 1537 234 0 0 0 chr4 124910607 124910633 -30719487 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1537 1195 68 0 0 chr4 124910708 124910855 -30719265 + B1_Mus1 SINE Alu 2 148 0 1 1537 1539 59 5 0 chr4 124910870 124911057 -30719063 + B2_Mm1a SINE B2 1 188 -5 1 1537 824 244 91 5 chr4 124911076 124911274 -30718846 - ID_B1 SINE B4 -8 216 2 1 192 2913 142 0 9 chr4 124911383 124911808 -30718312 + MTC LTR MaLR 1 421 0 1 1538 203 188 21 0 chr4 124912394 124912442 -30717678 + MIRb SINE MIR 52 100 -168 1 1538 718 298 53 0 chr4 124913003 124913191 -30716929 + B3A SINE B2 1 198 0 1 1538 432 0 0 0 chr4 124914507 124914555 -30715565 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1538 2580 136 8 13 chr4 124915130 124915524 -30714596 - ORR1B1 LTR MaLR -2 392 1 1 1538 11200 118 84 50 chr4 124915524 124917421 -30712699 - ORR1B1-int LTR MaLR 0 1963 2 1 1538 2146 144 24 16 chr4 124917427 124917809 -30712311 - ORR1B1 LTR MaLR -9 385 1 1 1538 230 265 65 47 chr4 124917809 124917916 -30712204 + MIRc SINE MIR 26 134 -134 1 1538 208 333 103 0 chr4 124918538 124918616 -30711504 - L2b LINE L2 -4 3371 3286 1 1538 278 362 40 4 chr4 124918758 124918900 -30711220 - MIRb SINE MIR -125 151 2 1 1538 557 168 0 0 chr4 124920115 124920210 -30709910 + RSINE1 SINE B4 3 97 -68 1 1538 812 191 6 47 chr4 124920285 124920455 -30709665 - RLTR20C LTR ERVK 0 578 416 1 1538 1015 215 79 56 chr4 124920447 124920752 -30709368 - RLTR20C LTR ERVK -222 312 1 1 1538 223 93 47 0 chr4 124920822 124920865 -30709255 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 1 1538 621 273 154 5 chr4 124921362 124921557 -30708563 - ID_B1 SINE B4 0 224 1 1 1538 393 301 77 10 chr4 124921564 124921668 -30708452 - PB1D7 SINE Alu -7 113 3 1 1538 282 106 0 0 chr4 124921797 124921844 -30708276 + (ATG)n Simple_repeat Simple_repeat 1 47 0 1 1538 180 316 92 49 chr4 124921944 124922107 -30708013 + L3 LINE CR1 2885 3054 -1435 1 1538 2801 266 71 9 chr4 124922305 124923079 -30707041 - Lx8 LINE L1 -326 7147 6326 1 1538 1073 112 5 0 chr4 124923238 124923453 -30706667 + (GGA)n Simple_repeat Simple_repeat 1 215 0 1 1538 180 0 0 0 chr4 124925020 124925040 -30705080 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1538 180 0 0 0 chr4 124925996 124926016 -30704104 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 1 1538 249 287 20 41 chr4 124928604 124928702 -30701418 + CT-rich Low_complexity Low_complexity 3 98 0 1 1538 375 337 60 18 chr4 124930900 124931066 -30699054 - MIRb SINE MIR -24 244 72 1 1538 232 282 86 86 chr4 124932115 124932243 -30697877 + MIRm SINE MIR 35 162 -114 1 1538 1231 265 12 128 chr4 124932762 124933191 -30696929 + MTE2b LTR MaLR 1 379 0 1 1538 180 268 99 0 chr4 124933443 124933514 -30696606 + L2a LINE L2 2938 3015 -411 1 1538 235 369 19 19 chr4 124934651 124934756 -30695364 - MIRm SINE MIR -13 263 159 1 1538 186 306 28 0 chr4 124935461 124935533 -30694587 - MIR3 SINE MIR -53 155 82 1 1538 616 245 0 20 chr4 124935868 124936014 -30694106 + RSINE1 SINE B4 2 144 -21 1 1538 780 68 0 0 chr4 124936031 124936134 -30693986 + (TC)n Simple_repeat Simple_repeat 1 103 0 1 1538 600 129 0 0 chr4 124936134 124936234 -30693886 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 1538 23 0 0 0 chr4 124936947 124936970 -30693150 + AT_rich Low_complexity Low_complexity 1 23 0 1 1538 306 152 0 0 chr4 124936992 124937051 -30693069 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1538 506 258 51 43 chr4 124937059 124937197 -30692923 - RSINE1 SINE B4 -26 139 1 1 1538 364 266 21 11 chr4 124937197 124937292 -30692828 - B4 SINE B4 -196 96 1 1 1538 223 297 63 71 chr4 124937299 124937426 -30692694 - MIRb SINE MIR -70 198 73 1 1538 514 217 50 0 chr4 124937701 124937821 -30692299 - B1F SINE Alu 0 149 24 1 1538 213 345 26 60 chr4 124938270 124938387 -30691733 - L2c LINE L2 -20 3367 3255 1 1538 234 354 27 23 chr4 124938420 124938566 -30691554 - MIRc SINE MIR -105 171 26 1 1538 293 323 62 26 chr4 124939425 124939619 -30690501 + L2c LINE L2 3187 3387 0 1 1538 252 322 107 27 chr4 124939602 124939752 -30690368 - MIRc SINE MIR 0 268 107 1 1538 206 354 24 0 chr4 124941027 124941109 -30689011 + MIRb SINE MIR 34 117 -151 1 1538 1208 62 0 0 chr4 124941596 124941741 -30688379 + B1_Mm SINE Alu 3 147 0 1 1538 273 119 0 0 chr4 124941743 124941785 -30688335 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1538 238 235 0 86 chr4 124942482 124942575 -30687545 + G-rich Low_complexity Low_complexity 2 86 0 1 1538 262 294 11 55 chr4 124942521 124942742 -30687378 + GA-rich Low_complexity Low_complexity 1 211 0 1 1538 369 0 0 0 chr4 124943892 124943933 -30686187 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1538 544 240 62 0 chr4 124945376 124945522 -30684598 - B4 SINE B4 -55 237 83 1 1538 708 169 0 0 chr4 124947176 124947306 -30682814 + CT-rich Low_complexity Low_complexity 4 133 0 1 1538 209 94 0 30 chr4 124947306 124947315 -30682805 + (TC)n Simple_repeat Simple_repeat 1 9 0 1 1538 1030 128 0 16 chr4 124947315 124947498 -30682622 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1538 209 94 0 30 chr4 124947498 124947521 -30682599 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1538 444 82 0 0 chr4 124947521 124947582 -30682538 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1538 781 241 53 20 chr4 124947616 124947863 -30682257 - B4A SINE B4 -6 286 10 1 1538 830 217 7 0 chr4 124948921 124949073 -30681047 - RSINE1 SINE B4 -10 155 3 1 1538 1275 58 0 12 chr4 124949082 124949094 -30681026 - B2_Mm1t SINE B2 -22 171 161 1 1538 222 37 0 0 chr4 124949094 124949121 -30680999 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1538 1275 58 0 12 chr4 124949121 124949281 -30680839 - B2_Mm1t SINE B2 -33 160 1 1 1538 334 334 181 10 chr4 124950200 124950691 -30679429 + L1ME3A LINE L1 5457 6025 -139 1 1538 198 0 0 0 chr4 124950988 124951010 -30679110 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1538 282 193 0 0 chr4 124951554 124951611 -30678509 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1538 402 338 19 32 chr4 124951615 124951771 -30678349 - RSINE1 SINE B4 -4 161 8 1 1538 21 45 0 22 chr4 124951776 124951802 -30678318 + AT_rich Low_complexity Low_complexity 1 26 0 1 1538 1236 61 0 0 chr4 124951802 124951949 -30678171 - B1_Mm SINE Alu 0 147 1 1 1538 21 45 0 22 chr4 124951949 124951968 -30678152 + AT_rich Low_complexity Low_complexity 1 19 0 1 1538 690 293 98 13 chr4 124952046 124952364 -30677756 - L1MA4A LINE L1 -286 6017 5673 1 1538 284 243 14 14 chr4 124953276 124953347 -30676773 + CT-rich Low_complexity Low_complexity 3 73 0 1 1538 267 302 58 45 chr4 124954468 124954624 -30675496 + MIR SINE MIR 31 188 -74 1 1538 584 292 148 39 chr4 124954737 124955047 -30675073 + ORR1E LTR MaLR 2 345 -14 1 1538 684 307 49 66 chr4 124955034 124955394 -30674726 - MLT1J LTR MaLR -87 361 37 1 1538 556 343 78 63 chr4 124955925 124956397 -30673723 + LTR33A LTR ERVL 26 510 -10 1 1538 200 330 80 0 chr4 124956935 124957023 -30673097 + L3b LINE CR1 188 282 -200 1 1538 1413 70 27 5 chr4 124957062 124957250 -30672870 + B2_Mm2 SINE B2 1 192 -3 1 1538 1160 96 0 0 chr4 124957253 124957399 -30672721 + B1_Mus1 SINE Alu 3 148 0 1 1538 494 172 10 0 chr4 124957399 124957498 -30672622 + GA-rich Low_complexity Low_complexity 4 103 0 1 1538 220 272 119 21 chr4 124957541 124957764 -30672356 + L2b LINE L2 3027 3320 -106 1 1538 203 0 37 0 chr4 124958216 124958243 -30671877 + (CATAT)n Simple_repeat Simple_repeat 2 29 0 1 1538 248 295 16 126 chr4 124958303 124958493 -30671627 + MIR SINE MIR 93 261 -1 1 1538 402 298 138 41 chr4 124958529 124958677 -30671443 + MLT1B LTR MaLR 20 186 -204 1 1538 477 62 0 0 chr4 124958677 124958742 -30671378 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1538 402 298 138 41 chr4 124958742 124958789 -30671331 + MLT1B LTR MaLR 187 234 -156 1 1538 287 323 108 101 chr4 124958963 124959221 -30670899 + B4 SINE B4 29 288 -4 1 1538 254 220 31 15 chr4 124960973 124961041 -30669079 - MIR SINE MIR -129 147 82 1 1538 197 65 0 31 chr4 124961222 124961254 -30668866 + (GGA)n Simple_repeat Simple_repeat 2 32 0 1 1538 656 57 0 0 chr4 124961633 124961721 -30668399 - B1_Mus2 SINE Alu -55 92 5 1 1538 473 271 93 84 chr4 124962001 124962046 -30668074 + L1MC3 LINE L1 7440 7472 -313 1 1538 2159 183 49 29 chr4 124962046 124962251 -30667869 - MTC LTR MaLR -3 418 210 1 1538 1260 34 0 7 chr4 124962251 124962399 -30667721 - B1_Mm SINE Alu 0 147 1 1 1538 2159 183 49 29 chr4 124962399 124962603 -30667517 - MTC LTR MaLR -212 209 1 1 1538 473 271 93 84 chr4 124962603 124962879 -30667241 + L1MC3 LINE L1 7473 7764 -21 1 1538 942 226 27 32 chr4 124962895 124963114 -30667006 + ID_B1 SINE B4 1 218 -6 1 1538 188 61 0 57 chr4 124963383 124963418 -30666702 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 1 1538 339 250 34 11 chr4 124964473 124964562 -30665558 + ID_B1 SINE B4 123 213 -11 1 1538 387 0 0 0 chr4 124964562 124964605 -30665515 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1 1538 813 131 0 0 chr4 124967675 124967805 -30662315 + (GGGAGA)n Simple_repeat Simple_repeat 3 132 0 1 1538 269 336 14 138 chr4 124968395 124968533 -30661587 - MLT1F2 LTR MaLR -183 377 257 1 1538 308 278 83 45 chr4 124968636 124968768 -30661352 - MLT1F2 LTR MaLR -372 188 52 1 1538 180 0 0 0 chr4 124969113 124969133 -30660987 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1538 497 261 22 7 chr4 124969133 124969272 -30660848 - MamRep564 Unknown Unknown -138 219 79 1 1538 194 345 83 0 chr4 124969332 124969416 -30660704 - MIRb SINE MIR -117 151 61 1 1538 306 0 0 0 chr4 124969436 124969470 -30660650 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 1 1538 1136 54 160 6 chr4 124969486 124969633 -30660487 + B2_Mm2 SINE B2 1 161 -34 1 1538 1184 88 0 0 chr4 124969633 124969781 -30660339 + B1_Mus1 SINE Alu 1 148 0 1 1538 1136 54 160 6 chr4 124969781 124969802 -30660318 + B2_Mm2 SINE B2 162 195 0 1 1538 387 0 0 0 chr4 124969802 124969845 -30660275 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1538 3144 134 81 4 chr4 124970760 124971394 -30658726 + RMER6D LTR ERVK 1 711 -9 1 1538 277 335 184 0 chr4 124971436 124971588 -30658532 + MIRc SINE MIR 74 253 -15 1 1538 1021 254 115 26 chr4 124971886 124972226 -30657894 + ORR1D2 LTR MaLR 1 370 0 1 1538 260 311 112 9 chr4 124972843 124972950 -30657170 + MER5B DNA MER1_type 32 149 -29 1 1538 198 103 0 0 chr4 124974431 124974460 -30655660 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1 1538 493 290 14 0 chr4 124974461 124974599 -30655521 - B1F2 SINE Alu -9 140 1 1 1538 987 202 20 20 chr4 124974599 124974677 -30655443 - ID SINE ID -145 79 2 1 1538 3078 86 0 74 chr4 124974847 124975200 -30654920 - RMER16 LTR ERVK 0 533 217 1 1538 1067 69 13 27 chr4 124975200 124975349 -30654771 - B1_Mus1 SINE Alu 0 148 2 1 1538 3078 86 0 74 chr4 124975349 124975496 -30654624 - RMER16 LTR ERVK -317 216 70 1 1538 290 326 3 13 chr4 124975907 124976018 -30654102 + MIR3 SINE MIR 70 176 -100 1 1538 621 100 0 0 chr4 124976343 124976433 -30653687 + (GGGGA)n Simple_repeat Simple_repeat 3 92 0 1 1538 594 148 0 0 chr4 124976522 124976623 -30653497 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 1538 269 331 8 16 chr4 124976692 124976821 -30653299 + GA-rich Low_complexity Low_complexity 2 129 0 1 1538 250 349 0 45 chr4 124976779 124976956 -30653164 + G-rich Low_complexity Low_complexity 2 170 0 1 1538 343 289 22 0 chr4 124976956 124977046 -30653074 + B4A SINE B4 1 92 -200 1 1538 261 0 0 0 chr4 124977052 124977081 -30653039 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1538 602 223 25 25 chr4 124977134 124977295 -30652825 + B4A SINE B4 109 269 -23 1 1538 411 123 0 0 chr4 124977295 124977376 -30652744 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1538 237 65 0 0 chr4 124977436 124977467 -30652653 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1 1538 262 221 0 21 chr4 124977570 124977667 -30652453 + GA-rich Low_complexity Low_complexity 6 100 0 1 1538 371 385 10 17 chr4 124978637 124978884 -30651236 + MIR SINE MIR 14 268 0 1 1538 214 259 52 0 chr4 124979065 124979123 -30650997 + MIRb SINE MIR 131 191 -77 1 1538 585 204 0 0 chr4 124979264 124979367 -30650753 + PB1D10 SINE Alu 1 103 -14 1 1538 692 211 233 6 chr4 124979544 124979716 -30650404 + ID_B1 SINE B4 1 211 -13 1 1538 289 265 139 25 chr4 124979729 124979861 -30650259 - MIRc SINE MIR -85 183 31 1 1538 917 251 75 53 chr4 124980536 124980818 -30649302 + B4A SINE B4 5 292 0 1 1538 615 192 0 0 chr4 124980821 124980998 -30649122 + GA-rich Low_complexity Low_complexity 2 178 0 1 1538 381 95 0 0 chr4 124981013 124981076 -30649044 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1538 216 0 0 0 chr4 124981076 124981099 -30649021 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1538 326 282 120 0 chr4 124981164 124981281 -30648839 - MLT1A0 LTR MaLR -111 254 124 1 1538 241 365 90 97 chr4 124983172 124983432 -30646688 - MIR SINE MIR 0 268 5 1 1538 279 314 47 19 chr4 124983644 124983751 -30646369 + MTEa LTR MaLR 259 368 -11 1 1538 618 226 83 6 chr4 124983756 124983912 -30646208 + B3A SINE B2 1 168 -30 1 1538 459 0 0 0 chr4 124983928 124983979 -30646141 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1538 423 68 0 0 chr4 124983979 124984037 -30646083 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1538 271 286 154 31 chr4 124985124 124985355 -30644765 + L2b LINE L2 3131 3382 -5 1 1538 1522 131 76 33 chr4 124986231 124986507 -30643613 + Lx4A LINE L1 6771 7058 0 1 1538 485 289 114 35 chr4 124986654 124986855 -30643265 + B4 SINE B4 1 217 -75 1 1538 216 0 0 0 chr4 124987011 124987035 -30643085 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1538 814 64 0 0 chr4 124987041 124987151 -30642969 - B1_Mus2 SINE Alu -36 111 2 1 1538 456 250 98 21 chr4 124987151 124987178 -30642942 - B4 SINE B4 -76 193 63 1 1538 439 220 18 18 chr4 124987230 124987341 -30642779 - MLT1D LTR MaLR 0 505 395 1 1538 757 300 125 5 chr4 124987383 124987569 -30642551 - L1MA4A LINE L1 -365 5938 5745 1 1538 648 245 14 14 chr4 124987569 124987710 -30642410 - B1_Mur1 SINE Alu -8 141 1 1 1538 757 296 131 5 chr4 124987710 124987923 -30642197 - L1MA4A LINE L1 -546 5757 5509 1 1538 349 305 150 15 chr4 124987923 124988180 -30641940 - MLT1D LTR MaLR -98 407 77 1 1538 189 0 0 0 chr4 124991327 124991348 -30638772 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1538 272 333 64 57 chr4 124991397 124991537 -30638583 - L3 LINE CR1 -522 3967 3827 1 1538 260 288 12 24 chr4 124991802 124991884 -30638236 + ID4 SINE ID 1 81 -2 1 1538 1849 105 168 25 chr4 124992024 124992345 -30637775 - ORR1B2 LTR MaLR 0 367 1 1 1538 285 29 0 0 chr4 124993051 124993085 -30637035 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1538 234 289 93 86 chr4 124995146 124995286 -30634834 - MIR SINE MIR -110 152 12 1 1538 1329 82 0 0 chr4 124997337 124997612 -30632508 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 1 1538 576 230 30 17 chr4 124997703 124997871 -30632249 + B3A SINE B2 3 177 -18 1 1538 200 282 0 18 chr4 124997904 124998016 -30632104 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 1 1538 231 336 30 8 chr4 124998228 124998360 -30631760 - MIRb SINE MIR -20 248 114 1 1538 1156 321 104 59 chr4 124998865 124999337 -30630783 + L1M3e LINE L1 1119 1647 -5383 1 1538 912 91 28 0 chr4 124999337 124999480 -30630640 - L1Md_F2 LINE L1 -2 6580 6434 1 1538 1156 321 104 59 chr4 124999480 124999907 -30630213 + L1M3e LINE L1 1648 2059 -4971 1 1538 329 207 195 0 chr4 124999912 124999999 -30630121 + MTE2a LTR MaLR 10 113 -266 1 1538 1144 228 16 43 chr4 125000010 125000092 -30630028 + MTE2b LTR MaLR 127 205 -174 1 1538 1210 93 55 6 chr4 125000092 125000275 -30629845 - B2_Mm1t SINE B2 0 193 2 2 1538 1144 228 16 43 chr4 125000275 125000449 -30629671 + MTE2b LTR MaLR 206 376 -3 1 1538 337 250 102 6 chr4 125000543 125000700 -30629420 + L1M2 LINE L1 4356 4527 -1616 3 1538 567 88 0 0 chr4 125000721 125000812 -30629308 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1538 236 284 0 13 chr4 125000812 125000887 -30629233 + (TATG)n Simple_repeat Simple_repeat 3 76 0 5 1538 297 308 194 13 chr4 125000891 125001128 -30628992 - B4A SINE B4 -8 284 5 6 1538 1299 282 112 31 chr4 125001175 125002283 -30627837 + L1M2 LINE L1 4577 5780 -532 3 1538 239 95 0 45 chr4 125002291 125002335 -30627785 + (CCCCCT)n Simple_repeat Simple_repeat 2 43 0 7 1538 249 301 14 0 chr4 125003060 125003133 -30626987 + L2b LINE L2 3289 3362 -13 8 1538 1256 57 6 0 chr4 125003666 125003825 -30626295 + B2_Mm1a SINE B2 1 160 -33 9 1538 459 0 0 0 chr4 125003825 125003876 -30626244 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 1538 280 290 10 31 chr4 125003986 125004082 -30626038 + CT-rich Low_complexity Low_complexity 5 98 0 1 1538 293 269 37 49 chr4 125004086 125004100 -30626020 - B4A SINE B4 -113 179 99 1 1538 362 250 0 0 chr4 125004100 125004168 -30625952 - PB1D10 SINE Alu -36 81 14 1 1538 624 27 0 0 chr4 125004234 125004308 -30625812 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1538 310 325 87 124 chr4 125004356 125004862 -30625258 + MLT1G LTR MaLR 3 489 0 1 1538 198 103 0 0 chr4 125005301 125005330 -30624790 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1538 1186 42 14 0 chr4 125005594 125005738 -30624382 + B1_Mus1 SINE Alu 3 148 0 1 1538 217 380 46 40 chr4 125006694 125006867 -30623253 - MIR3 SINE MIR -5 203 30 1 1538 399 239 0 9 chr4 125007480 125007594 -30622526 + L1M5 LINE L1 2865 2977 -3169 1 1538 572 141 16 16 chr4 125007693 125007816 -30622304 + GA-rich Low_complexity Low_complexity 3 125 0 2 1538 1380 62 0 0 chr4 125008196 125008375 -30621745 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1538 1056 227 18 18 chr4 125008375 125008586 -30621534 - ID_B1 SINE B4 -10 214 2 2 1538 240 236 42 0 chr4 125008609 125008681 -30621439 - L1MD3 LINE L1 -14 7981 7907 2 1538 3751 157 30 3 chr4 125008807 125009435 -30620685 - Lx5 LINE L1 -133 6917 6273 2 1538 334 255 128 18 chr4 125009537 125009675 -30620445 - L1MDa LINE L1 -4011 2622 2470 2 1538 913 245 54 5 chr4 125010346 125010551 -30619569 - B3 SINE B2 -1 215 1 2 1538 266 282 45 9 chr4 125011355 125011466 -30618654 - L1MB3 LINE L1 -7 6176 6062 2 1538 249 250 0 0 chr4 125012459 125012519 -30617601 - L1MB3 LINE L1 -259 5924 5865 2 1538 1083 261 76 61 chr4 125012562 125012905 -30617215 - MTEa LTR MaLR -31 348 1 2 1538 312 291 24 49 chr4 125012909 125013032 -30617088 - MLT1A1 LTR MaLR -21 387 268 2 1538 384 265 110 94 chr4 125013099 125013545 -30616575 - RLTR15 LTR ERVK -30 498 9 3 1538 683 239 93 89 chr4 125013757 125014038 -30616082 - L1MB3 LINE L1 -315 5868 5581 2 1538 1122 251 77 72 chr4 125014038 125014415 -30615705 + MTE2a LTR MaLR 1 379 0 3 1538 683 239 93 89 chr4 125014415 125014446 -30615674 - L1MB3 LINE L1 -603 5580 5555 2 1538 520 295 69 81 chr4 125014637 125014679 -30615441 - L1MA9 LINE L1 -40 6272 6226 3 1538 432 55 0 0 chr4 125014679 125014734 -30615386 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1538 520 295 69 81 chr4 125014734 125015111 -30615009 - L1MA9 LINE L1 -87 6225 5858 3 1538 377 282 19 0 chr4 125015129 125015232 -30614888 - L1MA9 LINE L1 -553 5759 5655 3 1538 391 260 233 0 chr4 125015235 125015381 -30614739 + L1M2 LINE L1 4249 4428 -1715 3 1538 324 333 16 0 chr4 125015597 125015720 -30614400 + L1M2 LINE L1 4899 5023 -1120 3 1538 481 253 16 11 chr4 125015753 125015888 -30614232 + L1M2 LINE L1 5655 5789 -389 3 1538 302 329 47 6 chr4 125016117 125016288 -30613832 - L1M2 LINE L1 -2708 3435 3258 3 1538 385 313 69 105 chr4 125016297 125016629 -30613491 - ORR1E LTR MaLR -16 343 24 3 1538 420 281 82 18 chr4 125016746 125016916 -30613204 - L1M2 LINE L1 -2931 3212 3032 3 1538 410 236 17 11 chr4 125016925 125017101 -30613019 + CT-rich Low_complexity Low_complexity 3 179 0 3 1538 1125 269 79 53 chr4 125017119 125017675 -30612445 - L1M2 LINE L1 -3109 3034 2459 3 1538 288 0 0 0 chr4 125017675 125017707 -30612413 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1538 1125 269 79 53 chr4 125017707 125017963 -30612157 - L1M2 LINE L1 -3685 2458 2201 3 1538 510 31 0 0 chr4 125018048 125018112 -30612008 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1538 1858 143 83 9 chr4 125018804 125019143 -30610977 + ORR1B2 LTR MaLR 4 367 0 4 1538 465 247 0 11 chr4 125019909 125020003 -30610117 + PB1D10 SINE Alu 18 110 -7 4 1538 222 37 0 0 chr4 125020089 125020116 -30610004 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1538 249 164 0 76 chr4 125020839 125020918 -30609202 + (CAGTA)n Simple_repeat Simple_repeat 1 73 0 4 1538 851 290 5 0 chr4 125021048 125021262 -30608858 - ID_B1 SINE B4 -8 216 2 4 1538 243 330 21 21 chr4 125021571 125021667 -30608453 + LTR85c LTR Gypsy? 458 553 -270 4 1538 187 79 26 26 chr4 125022010 125022049 -30608071 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1538 849 269 25 21 chr4 125022057 125022296 -30607824 - B4A SINE B4 -7 285 46 4 1538 210 279 11 75 chr4 125022215 125022308 -30607812 - B3A SINE B2 -77 121 35 4 1538 1294 66 0 0 chr4 125022316 125022483 -30607637 - B2_Mm2 SINE B2 -27 168 2 4 1538 1368 230 80 18 chr4 125022614 125022950 -30607170 - ORR1E LTR MaLR 0 359 3 5 1538 261 0 91 0 chr4 125023167 125023211 -30606909 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 5 1538 323 270 40 0 chr4 125023561 125023635 -30606485 + B1F SINE Alu 1 77 -72 5 1538 335 291 87 10 chr4 125024022 125024126 -30605994 - RSINE1 SINE B4 -43 122 11 5 1538 298 328 16 63 chr4 125024797 125024924 -30605196 - MER117 DNA MER1_type -3 194 74 5 1538 261 0 0 0 chr4 125025072 125025101 -30605019 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1538 245 242 300 29 chr4 125026496 125026666 -30603454 - Tigger7 DNA MER2_type -1 2490 2275 5 1538 246 300 0 0 chr4 125026686 125026746 -30603374 + BC1_Mm scRNA scRNA 34 93 -59 5 1538 736 278 93 47 chr4 125026756 125027035 -30603085 + B4A SINE B4 1 292 0 5 1538 413 262 58 0 chr4 125027076 125027179 -30602941 - Tigger7 DNA MER2_type -230 2261 2153 5 1538 945 273 98 31 chr4 125027193 125027480 -30602640 - Tigger7 DNA MER2_type -2184 307 2 5 1538 276 289 46 27 chr4 125027888 125028088 -30602032 - L1MEf LINE L1 -4018 2182 1980 5 1538 332 300 0 36 chr4 125028088 125028171 -30601949 - ID4_ SINE ID -1 82 3 6 1538 276 289 46 27 chr4 125028171 125028230 -30601890 - L1MEf LINE L1 -4221 1979 1918 5 1538 253 68 45 0 chr4 125028387 125028431 -30601689 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1538 279 0 0 0 chr4 125028431 125028462 -30601658 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1538 4201 257 62 1 chr4 125028486 125028951 -30601169 - Lx6 LINE L1 -217 7243 6752 6 1538 933 35 0 0 chr4 125028951 125029064 -30601056 + (TTTC)n Simple_repeat Simple_repeat 1 113 0 6 1538 4201 257 62 1 chr4 125029064 125029679 -30600441 - Lx6 LINE L1 -709 6751 6099 6 1538 338 315 82 97 chr4 125029721 125030051 -30600069 - L1MEf LINE L1 -4620 1580 1256 5 1538 510 114 0 0 chr4 125030096 125030175 -30599945 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1538 757 322 36 38 chr4 125030265 125030656 -30599464 - L1MC1 LINE L1 -3 6330 5941 6 1538 463 301 49 5 chr4 125030674 125030858 -30599262 - L1MC1 LINE L1 -773 5373 5182 6 1538 436 351 103 26 chr4 125030930 125031269 -30598851 - L1MEf LINE L1 -5176 1024 660 5 1538 486 221 55 3 chr4 125031269 125031377 -30598743 - PB1D10 SINE Alu 0 117 7 6 1538 181 316 61 37 chr4 125032555 125032637 -30597483 - MIR SINE MIR -119 143 60 6 1538 197 292 31 0 chr4 125032757 125032822 -30597298 - MIR SINE MIR -71 191 125 6 1538 508 298 136 43 chr4 125032910 125033145 -30596975 + B4A SINE B4 1 257 -35 7 1538 317 361 14 36 chr4 125033261 125033399 -30596721 - L2a LINE L2 -22 3404 3270 7 1538 321 296 194 24 chr4 125033821 125034074 -30596046 - L2a LINE L2 -663 2756 2461 7 1538 693 92 0 0 chr4 125034290 125034388 -30595732 + (TG)n Simple_repeat Simple_repeat 2 99 0 7 1538 233 264 82 98 chr4 125035201 125035238 -30594882 - Zaphod DNA Tip100 -827 3204 3170 7 1538 311 315 22 0 chr4 125035238 125035330 -30594790 - MER58B DNA MER1_type 0 341 248 7 1538 444 19 0 0 chr4 125035492 125035545 -30594575 + (CAGG)n Simple_repeat Simple_repeat 3 55 0 7 1538 189 159 0 0 chr4 125037713 125037757 -30592363 + (ATG)n Simple_repeat Simple_repeat 2 45 0 7 1538 280 264 45 14 chr4 125037769 125037879 -30592241 - PB1D10 SINE Alu -5 112 2 7 1538 462 294 68 0 chr4 125038576 125038722 -30591398 - MIRc SINE MIR -46 222 67 7 1538 890 157 65 33 chr4 125039107 125039135 -30590985 + ORR1E LTR MaLR 2 28 -331 7 1538 203 0 0 36 chr4 125039135 125039163 -30590957 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 8 1538 890 191 68 45 chr4 125039163 125039373 -30590747 + ORR1E LTR MaLR 29 240 -130 7 1538 914 207 318 31 chr4 125039373 125039697 -30590423 + MTD LTR MaLR 1 417 -2 8 1538 410 198 110 0 chr4 125039698 125039789 -30590331 + ORR1E LTR MaLR 264 364 -15 7 1538 424 288 48 7 chr4 125040409 125040556 -30589564 + MIR3 SINE MIR 35 187 -21 8 1538 679 284 28 84 chr4 125040907 125041157 -30588963 - B4 SINE B4 -8 284 49 8 1539 208 119 48 0 chr4 125043123 125043165 -30586955 + T-rich Low_complexity Low_complexity 6 49 0 8 1539 606 279 70 49 chr4 125043332 125043618 -30586502 + B4A SINE B4 1 292 0 8 1539 483 18 0 0 chr4 125043644 125043700 -30586420 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1539 186 43 0 0 chr4 125043753 125043776 -30586344 + (CAT)n Simple_repeat Simple_repeat 1 23 0 8 1539 182 381 59 8 chr4 125043855 125043974 -30586146 + L2 LINE L2 2727 2851 -568 8 1539 349 345 39 66 chr4 125044067 125044399 -30585721 + L1M4 LINE L1 112 434 -6108 8 1539 607 260 11 52 chr4 125044433 125044624 -30585496 + B3A SINE B2 1 183 -15 9 1539 495 314 82 37 chr4 125044783 125045051 -30585069 + B4A SINE B4 1 280 -12 9 1539 405 0 0 0 chr4 125045060 125045105 -30585015 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1539 537 307 38 92 chr4 125045134 125045579 -30584541 + L1M4 LINE L1 1226 1646 -4896 8 1539 802 228 0 198 chr4 125046141 125046404 -30583716 - B3 SINE B2 -5 211 1 9 1539 915 250 64 63 chr4 125046411 125046933 -30583187 + L1M4 LINE L1 2409 2932 -3712 8 1539 280 217 0 0 chr4 125046933 125046979 -30583141 + ID4_ SINE ID 19 64 -19 9 1539 909 258 10 10 chr4 125046938 125047138 -30582982 + ID_B1 SINE B4 25 224 0 9 1539 302 272 142 35 chr4 125047140 125047281 -30582839 + HAL1-3A_ME LINE L1 2284 2439 -419 9 1539 462 244 0 0 chr4 125047281 125047416 -30582704 + GA-rich Low_complexity Low_complexity 2 136 0 9 1539 563 314 85 11 chr4 125047423 125047737 -30582383 + L1M4 LINE L1 3052 3399 -3239 8 1539 805 233 55 58 chr4 125047742 125048070 -30582050 + RLTR15 LTR ERVK 8 334 -25 9 1539 270 250 82 16 chr4 125048097 125048219 -30581901 + L1MC LINE L1 2920 3049 -3097 9 1539 180 0 0 0 chr4 125048244 125048264 -30581856 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 1 1539 468 0 0 0 chr4 125049227 125049279 -30580841 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1539 360 322 88 57 chr4 125049334 125049561 -30580559 + MLT1N2 LTR MaLR 79 312 -250 1 1539 1191 69 0 0 chr4 125050424 125050569 -30579551 + B1_Mus2 SINE Alu 3 147 0 1 1539 418 293 91 37 chr4 125050843 125051077 -30579043 + MIRb SINE MIR 1 251 -17 1 1539 260 245 135 9 chr4 125051622 125051733 -30578387 + MLT1I LTR MaLR 230 354 -57 1 1539 328 313 34 79 chr4 125052297 125052474 -30577646 + L2a LINE L2 3254 3422 -4 1 1539 268 224 0 17 chr4 125052696 125052755 -30577365 + MLT1I LTR MaLR 354 411 0 1 1539 238 220 0 63 chr4 125053004 125053067 -30577053 + MLT1N2 LTR MaLR 92 150 -412 1 1539 209 170 43 0 chr4 125054587 125054634 -30575486 + GA-rich Low_complexity Low_complexity 6 54 0 1 1539 263 235 106 97 chr4 125054688 125054801 -30575319 + MT2B LTR ERVL 150 263 -338 1 1539 637 154 18 40 chr4 125054708 125054823 -30575297 + B1_Mur2 SINE Alu 11 135 -14 1 1539 551 147 0 10 chr4 125054851 125054954 -30575166 + GA-rich Low_complexity Low_complexity 2 103 0 1 1539 192 301 53 27 chr4 125054996 125055071 -30575049 - L2b LINE L2 -62 3313 3237 1 1539 555 16 0 0 chr4 125055132 125055196 -30574924 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1539 1299 81 31 31 chr4 125056276 125056467 -30573653 - B2_Mm1a SINE B2 -1 192 2 1 1539 248 247 46 23 chr4 125056488 125056575 -30573545 + MER5B DNA MER1_type 77 165 -13 1 1539 380 171 12 0 chr4 125056909 125056991 -30573129 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1539 259 293 53 0 chr4 125056994 125057069 -30573051 - ID4_ SINE ID -2 81 3 1 1539 407 229 0 0 chr4 125057084 125057167 -30572953 - B1F SINE Alu -2 147 65 1 1539 306 0 0 0 chr4 125057167 125057201 -30572919 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1539 935 88 12 0 chr4 125057201 125057361 -30572759 + (CAGAGA)n Simple_repeat Simple_repeat 6 167 0 1 1539 433 247 34 214 chr4 125057365 125057571 -30572549 - B3 SINE B2 -46 170 2 1 1539 271 259 0 0 chr4 125057584 125057642 -30572478 - PB1 SINE Alu -68 59 2 1 1539 430 278 0 0 chr4 125058060 125058157 -30571963 + PB1D10 SINE Alu 12 108 -9 1 1539 341 261 75 11 chr4 125059106 125059199 -30570921 + PB1D7 SINE Alu 6 104 -16 1 1539 340 190 0 23 chr4 125059204 125059290 -30570830 + GA-rich Low_complexity Low_complexity 3 86 0 1 1539 499 288 24 0 chr4 125059290 125059415 -30570705 + ID_B1 SINE B4 84 211 -13 1 1539 339 192 0 0 chr4 125059433 125059511 -30570609 + GA-rich Low_complexity Low_complexity 1 78 0 1 1539 206 51 73 49 chr4 125059624 125059665 -30570455 - MIR3 SINE MIR -9 199 158 1 1539 693 92 0 0 chr4 125059882 125059980 -30570140 + (TTAG)n Simple_repeat Simple_repeat 2 99 0 1 1539 674 257 53 0 chr4 125059982 125060134 -30569986 - RSINE1 SINE B4 -5 160 1 1 1539 221 143 0 0 chr4 125060485 125060520 -30569600 + B1F2 SINE Alu 22 56 -93 1 1539 1666 179 67 6 chr4 125060703 125060884 -30569236 + ORR1D1 LTR MaLR 5 190 -184 1 1539 522 0 0 0 chr4 125060884 125060942 -30569178 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1539 1666 179 67 6 chr4 125060942 125061103 -30569017 + ORR1D1 LTR MaLR 191 367 -7 1 1539 1830 195 83 5 chr4 125061109 125061505 -30568615 + ORR1D1-int LTR MaLR 1 427 -943 1 1539 1067 193 0 25 chr4 125061498 125061700 -30568420 + MTD LTR MaLR 223 419 0 1 1539 750 273 38 33 chr4 125062378 125062590 -30567530 - ID_B1 SINE B4 0 224 12 1 1539 654 236 170 0 chr4 125063852 125064017 -30566103 + ID_B1 SINE B4 1 193 -31 1 1539 356 296 27 27 chr4 125063921 125064032 -30566088 + B1_Mur4 SINE Alu 18 128 -22 1 1539 189 0 0 0 chr4 125064519 125064540 -30565580 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1539 498 299 14 42 chr4 125064550 125064766 -30565354 + L1ME4a LINE L1 5689 5898 -226 1 1539 624 91 0 0 chr4 125064905 125064993 -30565127 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1539 516 308 13 20 chr4 125065125 125065150 -30564970 + RSINE1 SINE B4 2 26 -139 1 1539 2569 164 45 0 chr4 125065150 125065553 -30564567 + MTC LTR MaLR 1 421 0 1 1539 516 308 13 20 chr4 125065553 125065676 -30564444 + RSINE1 SINE B4 27 149 -16 1 1539 479 318 17 0 chr4 125065735 125065911 -30564209 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1539 1024 222 20 20 chr4 125066024 125066226 -30563894 + B3 SINE B2 2 203 -13 1 1539 202 95 23 23 chr4 125066226 125066269 -30563851 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 1 1539 650 251 58 32 chr4 125066418 125066607 -30563513 - B4A SINE B4 -58 234 41 1 1539 359 220 22 39 chr4 125067550 125067730 -30562390 + CT-rich Low_complexity Low_complexity 4 180 0 1 1539 224 362 67 0 chr4 125068954 125069059 -30561061 + MIRm SINE MIR 165 276 0 1 1539 264 211 0 0 chr4 125069009 125069061 -30561059 + L2c LINE L2 3336 3387 0 1 1539 556 0 23 35 chr4 125069291 125069378 -30560742 + (GGAGA)n Simple_repeat Simple_repeat 1 86 0 1 1539 1254 215 94 18 chr4 125069420 125069751 -30560369 - MTD LTR MaLR -46 373 18 1 1539 285 304 0 52 chr4 125070976 125071073 -30559047 - PB1D10 SINE Alu -3 114 23 1 1539 1007 153 49 0 chr4 125071084 125071267 -30558853 - URR1B DNA MER1_type 0 225 34 1 1539 1142 269 27 54 chr4 125071423 125071796 -30558324 + Charlie19a DNA Charlie 16 378 -8 1 1539 2779 118 61 14 chr4 125073030 125073304 -30556816 + RMER4A LTR ERVK 1 272 -194 1 1539 360 0 0 0 chr4 125073304 125073344 -30556776 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 1 1539 2779 118 61 14 chr4 125073344 125073514 -30556606 + RMER4A LTR ERVK 273 465 -1 1 1539 303 206 0 29 chr4 125075986 125076056 -30554064 - PB1D10 SINE Alu -2 115 48 1 1539 243 275 0 36 chr4 125077661 125077744 -30552376 + ID4 SINE ID 3 82 -1 1 1539 384 289 66 152 chr4 125077772 125078135 -30551985 + ORR1E LTR MaLR 1 332 -38 1 1539 211 301 170 11 chr4 125079220 125079314 -30550806 - B1F SINE Alu -9 140 32 1 1539 465 103 0 0 chr4 125079432 125079500 -30550620 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1539 200 207 43 71 chr4 125079612 125079742 -30550378 + L2a LINE L2 3021 3147 -240 1 1539 244 265 29 0 chr4 125079878 125079946 -30550174 + L2a LINE L2 3357 3426 0 1 1539 234 279 165 0 chr4 125080622 125080701 -30549419 - MIR3 SINE MIR -49 159 68 1 1539 334 298 106 7 chr4 125081087 125081262 -30548858 + MIR SINE MIR 3 190 -18 1 1539 261 258 15 0 chr4 125081713 125081779 -30548341 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1539 396 263 35 76 chr4 125081893 125082037 -30548083 - RSINE1 SINE B4 -25 140 3 1 1539 818 241 93 10 chr4 125082037 125082241 -30547879 - B4 SINE B4 -65 227 7 1 1539 564 100 0 48 chr4 125082397 125082486 -30547634 + (TTCTC)n Simple_repeat Simple_repeat 5 93 0 1 1539 945 122 0 0 chr4 125082486 125082633 -30547487 + (TCCCC)n Simple_repeat Simple_repeat 4 150 0 1 1539 564 100 0 48 chr4 125082633 125082669 -30547451 + (TTCTC)n Simple_repeat Simple_repeat 4 34 0 1 1539 360 0 0 0 chr4 125082669 125082709 -30547411 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 1 1539 1254 28 0 0 chr4 125082710 125082854 -30547266 - B1_Mus1 SINE Alu -1 147 4 1 1539 283 311 108 10 chr4 125083605 125083796 -30546324 + MIRb SINE MIR 44 268 0 1 1539 342 0 0 0 chr4 125083960 125083998 -30546122 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1539 227 247 0 110 chr4 125084812 125084903 -30545217 - MLT1H1 LTR MaLR -104 385 305 1 1539 439 289 195 18 chr4 125084873 125085144 -30544976 - MLT1H1 LTR MaLR -216 363 3 1 1539 180 277 0 0 chr4 125085405 125085452 -30544668 - L2b LINE L2 -1 3374 3328 1 1539 189 0 0 0 chr4 125085547 125085568 -30544552 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1539 244 264 33 54 chr4 125085636 125085728 -30544392 + MIRm SINE MIR 78 167 -95 1 1539 376 252 0 34 chr4 125087869 125087965 -30542155 + PB1D7 SINE Alu 10 101 -48 1 1539 522 31 0 0 chr4 125087965 125088029 -30542091 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1539 366 291 0 60 chr4 125088029 125088049 -30542071 + B1F SINE Alu 102 119 -30 1 1539 205 326 173 6 chr4 125089339 125089484 -30540636 + MIRb SINE MIR 2 159 -117 1 1539 954 122 20 39 chr4 125090888 125091041 -30539079 - B1_Mur4 SINE Alu 0 150 1 1 1539 427 221 19 16 chr4 125091417 125091545 -30538575 - B1_Mur2 SINE Alu 0 149 21 1 1539 523 322 111 59 chr4 125091543 125091850 -30538270 - MLT1J1 LTR MaLR -108 336 14 1 1539 180 0 0 0 chr4 125091850 125091870 -30538250 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1539 382 337 99 45 chr4 125092456 125092770 -30537350 - L3 LINE CR1 -488 4001 3671 1 1539 464 242 11 0 chr4 125093650 125093741 -30536379 + RSINE1 SINE B4 31 122 -43 1 1539 387 202 17 8 chr4 125094028 125094148 -30535972 + CT-rich Low_complexity Low_complexity 3 123 0 1 1539 260 284 30 0 chr4 125094772 125094839 -30535281 - ID4_ SINE ID -13 70 2 1 1539 920 270 22 30 chr4 125094956 125095227 -30534893 - B4A SINE B4 -22 270 2 1 1539 352 230 230 0 chr4 125097083 125097183 -30532937 - ID_B1 SINE B4 0 224 102 1 1539 317 314 19 9 chr4 125097968 125098074 -30532046 + MIR SINE MIR 16 122 -140 1 1539 243 0 0 0 chr4 125098123 125098150 -30531970 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1539 249 252 143 9 chr4 125098797 125098909 -30531211 + L2 LINE L2 1479 1605 -1814 1 1539 258 243 118 27 chr4 125099526 125099636 -30530484 + ORR1E LTR MaLR 72 191 -168 1 1539 537 295 20 45 chr4 125099734 125099936 -30530184 + ORR1E LTR MaLR 1 197 -162 1 1539 600 272 42 72 chr4 125100640 125100902 -30529218 - RLTR42-int LTR ERVK -4120 1402 1149 1 1539 265 324 52 65 chr4 125103157 125103314 -30526806 - MLT1H1 LTR MaLR -388 167 14 1 1539 342 0 0 0 chr4 125103483 125103521 -30526599 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1539 232 291 11 75 chr4 125104370 125104463 -30525657 - MER115 DNA Tip100 -530 163 77 2 1539 284 269 25 37 chr4 125104660 125104741 -30525379 - MER58C DNA MER1_type -17 198 119 2 1539 326 280 0 0 chr4 125105148 125105223 -30524897 + RSINE1 SINE B4 81 155 -10 2 1539 315 0 0 0 chr4 125105247 125105282 -30524838 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1539 656 82 243 9 chr4 125105318 125105429 -30524691 - B1_Mur4 SINE Alu -12 138 2 2 1539 612 0 0 0 chr4 125106507 125106575 -30523545 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1539 441 0 0 0 chr4 125109145 125109194 -30520926 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1539 414 0 0 0 chr4 125109194 125109239 -30520881 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1539 249 347 55 14 chr4 125109648 125109794 -30520326 - L3 LINE CR1 -217 4272 4121 2 1539 411 240 2 0 chr4 125110031 125110125 -30519995 - B3A SINE B2 -94 99 5 2 1539 1751 278 86 0 chr4 125110261 125110797 -30519323 + L1MC1 LINE L1 5746 6327 -6 2 1539 245 308 10 62 chr4 125110842 125110939 -30519181 + MTEb LTR MaLR 1 92 -267 2 1539 272 207 71 35 chr4 125111178 125111203 -30518917 + MTEb LTR MaLR 278 301 -78 2 1539 234 0 0 0 chr4 125111203 125111229 -30518891 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 2 1539 272 207 71 35 chr4 125111229 125111288 -30518832 + MTEb LTR MaLR 302 365 -14 2 1539 1191 274 37 35 chr4 125111413 125111643 -30518477 - MTD LTR MaLR -3 416 190 2 1539 640 185 55 69 chr4 125111643 125111788 -30518332 - B1_Mus2 SINE Alu -3 144 2 2 1539 1191 274 37 35 chr4 125111788 125111905 -30518215 - MTD LTR MaLR -230 189 69 2 1539 232 406 61 18 chr4 125112231 125112459 -30517661 + MamRep605 Unknown Unknown 118 355 -521 2 1539 394 266 32 0 chr4 125113138 125113232 -30516888 + PB1D7 SINE Alu 22 118 -2 2 1539 804 262 14 40 chr4 125113243 125113466 -30516654 + ID_B1 SINE B4 4 220 -4 2 1539 240 35 0 0 chr4 125113469 125113498 -30516622 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 2 1539 420 400 48 31 chr4 125114010 125114366 -30515754 + LTR16A LTR ERVL 89 450 -1 2 1539 230 326 48 48 chr4 125114391 125114536 -30515584 + L2 LINE L2 2704 2848 -571 2 1539 1180 37 0 0 chr4 125115034 125115170 -30514950 + B1_Mus1 SINE Alu 2 137 -11 2 1539 198 0 0 0 chr4 125115170 125115192 -30514928 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1539 350 342 107 15 chr4 125115662 125115858 -30514262 - MLT1E1 LTR MaLR -52 602 389 2 1539 348 323 24 16 chr4 125116090 125116216 -30513904 - MLT1E1 LTR MaLR -430 130 4 2 1539 193 364 13 0 chr4 125116225 125116302 -30513818 - MIR SINE MIR -71 191 114 2 1539 180 0 0 0 chr4 125116302 125116322 -30513798 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1539 354 163 0 0 chr4 125116321 125116419 -30513701 + GA-rich Low_complexity Low_complexity 2 99 0 2 1539 1267 290 31 29 chr4 125116564 125117078 -30513042 + L1MB7 LINE L1 5636 6172 -12 2 1539 209 397 33 0 chr4 125117913 125118034 -30512086 + MIRb SINE MIR 96 220 -48 2 1539 190 384 12 0 chr4 125118160 125118246 -30511874 - L3 LINE CR1 -723 3766 3680 2 1539 24 0 0 0 chr4 125119704 125119728 -30510392 + AT_rich Low_complexity Low_complexity 1 24 0 2 1539 315 319 98 85 chr4 125119728 125119964 -30510156 - MLT1C LTR MaLR -220 247 9 2 1539 294 347 43 23 chr4 125120181 125120370 -30509750 - L1MB1 LINE L1 -224 5965 5770 2 1539 472 324 34 20 chr4 125120827 125120975 -30509145 - MIR SINE MIR -24 238 89 2 1539 437 294 35 79 chr4 125120975 125121204 -30508916 - MER20 DNA MER1_type 0 219 1 2 1539 227 355 60 78 chr4 125121204 125121263 -30508857 - MIRm SINE MIR -178 98 40 2 1539 405 0 0 0 chr4 125121838 125121883 -30508237 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1539 826 190 201 0 chr4 125123448 125123632 -30506488 + ID_B1 SINE B4 4 224 0 2 1539 252 77 0 0 chr4 125123982 125124021 -30506099 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1539 588 176 0 0 chr4 125124034 125124199 -30505921 + (TG)n Simple_repeat Simple_repeat 2 166 0 2 1539 267 208 0 23 chr4 125124224 125124352 -30505768 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 1539 848 311 22 18 chr4 125124377 125124649 -30505471 - B4A SINE B4 -18 274 2 2 1539 1127 165 92 0 chr4 125125496 125125702 -30504418 + URR1B DNA MER1_type 1 225 0 2 1539 285 25 22 137 chr4 125125851 125125990 -30504130 + (TATATG)n Simple_repeat Simple_repeat 1 123 0 2 1539 231 361 34 0 chr4 125126391 125126510 -30503610 - MIRc SINE MIR -129 139 17 2 1539 648 338 43 12 chr4 125126681 125126906 -30503214 - MIR SINE MIR -24 244 19 2 1539 921 281 87 8 chr4 125126955 125127016 -30503104 - B4A SINE B4 -6 286 226 2 1539 363 44 0 0 chr4 125127016 125127061 -30503059 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 1539 921 281 87 8 chr4 125127061 125127264 -30502856 - B4A SINE B4 -67 225 3 2 1539 305 351 18 0 chr4 125127358 125127472 -30502648 + MER5A DNA MER1_type 72 187 -2 2 1539 408 181 0 0 chr4 125127639 125127722 -30502398 + (ATGGTG)n Simple_repeat Simple_repeat 4 86 0 2 1539 185 94 31 0 chr4 125128773 125128805 -30501315 + (ACTG)n Simple_repeat Simple_repeat 4 36 0 2 1539 334 351 117 24 chr4 125128828 125129041 -30501079 + MIR SINE MIR 17 249 -13 2 1539 300 137 0 0 chr4 125129717 125129768 -30500352 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 2 1539 283 236 180 9 chr4 125129768 125129879 -30500241 - L2b LINE L2 0 3375 3246 2 1539 582 15 0 0 chr4 125130396 125130463 -30499657 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1539 194 318 69 23 chr4 125131731 125131818 -30498302 + MIRc SINE MIR 113 203 -65 2 1539 342 0 0 0 chr4 125131990 125132028 -30498092 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1539 294 260 0 0 chr4 125132382 125132455 -30497665 - ID4_ SINE ID 0 83 11 2 1539 293 252 100 42 chr4 125132467 125132587 -30497533 - B1F SINE Alu 0 149 23 2 1539 432 0 0 0 chr4 125133020 125133068 -30497052 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1539 593 242 15 29 chr4 125133079 125133215 -30496905 - RSINE1 SINE B4 -28 137 4 2 1539 268 347 29 23 chr4 125135729 125135903 -30494217 + L1ME3B LINE L1 5730 5904 -336 2 1539 324 0 0 0 chr4 125135927 125135963 -30494157 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1539 230 191 26 43 chr4 125135979 125136094 -30494026 + GA-rich Low_complexity Low_complexity 2 114 0 2 1539 31 44 0 0 chr4 125136204 125136249 -30493871 + AT_rich Low_complexity Low_complexity 1 45 0 2 1539 614 255 176 0 chr4 125136506 125136694 -30493426 + ID_B1 SINE B4 2 222 -2 2 1539 360 0 0 0 chr4 125137719 125137759 -30492361 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1539 205 200 53 35 chr4 125137913 125137970 -30492150 + MIR3 SINE MIR 97 154 -54 2 1539 201 295 0 16 chr4 125138210 125138272 -30491848 + C-rich Low_complexity Low_complexity 5 65 0 2 1539 318 148 0 0 chr4 125138414 125138468 -30491652 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1539 452 189 76 1 chr4 125138838 125138960 -30491160 - PB1D10 SINE Alu -7 142 7 2 1539 261 310 14 0 chr4 125138906 125138977 -30491143 - B4A SINE B4 -147 145 74 2 1539 257 277 157 0 chr4 125139781 125139864 -30490256 + MIRc SINE MIR 52 147 -121 2 1539 286 256 51 0 chr4 125140639 125140717 -30489403 + MLT1H2 LTR MaLR 70 151 -338 2 1539 236 304 87 0 chr4 125140938 125141030 -30489090 - MIRc SINE MIR -112 156 57 2 1539 871 257 62 0 chr4 125141207 125141417 -30488703 + ID_B1 SINE B4 2 224 0 2 1539 180 0 0 0 chr4 125141852 125141872 -30488248 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1539 516 189 65 9 chr4 125142633 125142740 -30487380 + PB1D7 SINE Alu 7 119 -1 2 1539 293 384 56 79 chr4 125143577 125144010 -30486110 - L2b LINE L2 -49 3326 2906 2 1539 218 355 42 35 chr4 125144162 125144305 -30485815 + MIRb SINE MIR 38 181 -87 2 1539 308 133 0 0 chr4 125144875 125144920 -30485200 - HAL1-3A_ME LINE L1 -838 2020 1976 2 1539 603 177 0 0 chr4 125144925 125145055 -30485065 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1539 682 272 6 18 chr4 125145055 125145220 -30484900 - RSINE1 SINE B4 0 165 3 2 1539 252 0 0 0 chr4 125145524 125145552 -30484568 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1539 1716 26 0 0 chr4 125145560 125145752 -30484368 - B2_Mm1a SINE B2 -1 192 1 2 1539 471 317 131 28 chr4 125145788 125146109 -30484011 + ORR1E LTR MaLR 1 354 -5 2 1539 475 220 8 71 chr4 125146538 125146665 -30483455 + MER5A DNA MER1_type 38 156 -33 2 1539 244 312 40 30 chr4 125147648 125147747 -30482373 + MIRb SINE MIR 29 128 -140 2 1539 337 291 95 36 chr4 125149025 125149246 -30480874 + B4 SINE B4 1 234 -58 2 1539 209 170 0 0 chr4 125149297 125149324 -30480796 + (TCTCTG)n Simple_repeat Simple_repeat 1 27 0 2 1539 207 0 0 0 chr4 125149324 125149347 -30480773 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1539 209 170 0 0 chr4 125149347 125149366 -30480754 + (TCTCTG)n Simple_repeat Simple_repeat 6 24 0 2 1539 287 370 127 24 chr4 125149589 125149802 -30480318 + MIRb SINE MIR 34 268 0 2 1539 756 241 214 22 chr4 125150075 125150393 -30479727 - MTD LTR MaLR -40 379 1 2 1539 348 314 0 46 chr4 125151767 125151897 -30478223 + BC1_Mm scRNA scRNA 14 137 -15 2 1539 305 268 194 11 chr4 125151940 125152094 -30478026 - MIRc SINE MIR -97 179 2 2 1539 202 254 97 14 chr4 125152106 125152178 -30477942 + MIRc SINE MIR 122 199 -69 2 1539 424 235 89 22 chr4 125152843 125152978 -30477142 - B1F SINE Alu -1 148 5 2 1539 2339 138 2 22 chr4 125153248 125153656 -30476464 + RLTR11B LTR ERVK 54 453 0 2 1539 329 227 245 10 chr4 125154064 125154162 -30475958 + PB1 SINE Alu 5 125 -2 2 1539 446 0 19 0 chr4 125154532 125154586 -30475534 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1539 333 320 19 13 chr4 125155052 125155207 -30474913 + (CAGGG)n Simple_repeat Simple_repeat 5 160 0 2 1539 324 0 0 0 chr4 125156647 125156683 -30473437 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1539 374 332 65 65 chr4 125156982 125157272 -30472848 - L2c LINE L2 -75 3312 3023 3 1539 269 378 16 8 chr4 125157410 125157538 -30472582 + MIR SINE MIR 123 251 -11 3 1539 433 185 10 71 chr4 125157546 125157645 -30472475 - PB1D10 SINE Alu -1 116 24 3 1539 560 289 7 7 chr4 125160047 125160190 -30469930 + B1_Mur1 SINE Alu 1 143 -6 3 1539 258 81 0 0 chr4 125160248 125160285 -30469835 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1539 440 209 28 39 chr4 125160309 125160488 -30469632 + (TATG)n Simple_repeat Simple_repeat 3 179 0 3 1539 244 301 24 12 chr4 125160628 125160712 -30469408 - MIRb SINE MIR -35 233 149 3 1539 938 39 8 0 chr4 125160803 125160930 -30469190 + (TG)n Simple_repeat Simple_repeat 2 129 0 3 1539 199 347 72 72 chr4 125162128 125162308 -30467812 + MIRc SINE MIR 15 194 -74 3 1539 264 327 10 0 chr4 125162848 125162949 -30467171 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 3 1539 189 175 0 0 chr4 125163141 125163181 -30466939 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 3 1539 24 32 0 0 chr4 125163901 125163932 -30466188 + GC_rich Low_complexity Low_complexity 1 31 0 3 1539 191 196 22 0 chr4 125164882 125164928 -30465192 + L2a LINE L2 3379 3425 -1 3 1539 248 131 0 21 chr4 125164928 125164975 -30465145 + GA-rich Low_complexity Low_complexity 1 46 0 3 1539 204 364 89 19 chr4 125164982 125165139 -30464981 + MIRb SINE MIR 84 251 -17 3 1539 293 0 27 0 chr4 125165169 125165206 -30464914 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1539 228 194 0 43 chr4 125167566 125167636 -30462484 + G-rich Low_complexity Low_complexity 5 71 0 3 1539 37 52 0 0 chr4 125167847 125167905 -30462215 + GC_rich Low_complexity Low_complexity 1 58 0 3 1539 425 103 0 14 chr4 125170305 125170374 -30459746 + (GGA)n Simple_repeat Simple_repeat 2 69 0 3 1539 441 0 0 0 chr4 125171446 125171495 -30458625 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1539 194 217 43 0 chr4 125173003 125173049 -30457071 - MIR SINE MIR -14 248 201 3 1539 340 346 99 0 chr4 125173072 125173274 -30456846 - MIRb SINE MIR -18 250 29 3 1540 226 309 36 24 chr4 125175073 125175156 -30454964 + MIRb SINE MIR 82 165 -103 3 1540 219 385 0 0 chr4 125175211 125175299 -30454821 + MIRb SINE MIR 152 243 -25 3 1540 282 56 0 0 chr4 125175299 125175335 -30454785 + (GGA)n Simple_repeat Simple_repeat 3 38 0 3 1540 358 305 16 25 chr4 125176315 125176436 -30453684 - MER5A DNA MER1_type -3 186 67 3 1540 244 335 65 7 chr4 125176628 125176781 -30453339 + MIR SINE MIR 22 183 -79 3 1540 396 88 0 0 chr4 125176812 125176869 -30453251 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1540 213 39 0 0 chr4 125177015 125177041 -30453079 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 3 1540 1235 55 0 6 chr4 125177041 125177205 -30452915 - B2_Mm1t SINE B2 -30 163 1 3 1540 260 379 93 9 chr4 125177229 125177455 -30452665 + MIRb SINE MIR 21 265 -3 3 1540 1248 34 0 20 chr4 125177695 125177846 -30452274 - B1_Mus1 SINE Alu 0 148 1 3 1540 577 209 82 0 chr4 125177854 125177964 -30452156 - PB1D9 SINE Alu -1 119 1 3 1540 343 350 110 33 chr4 125178484 125178756 -30451364 + L2b LINE L2 3081 3373 -2 3 1540 183 368 0 29 chr4 125178778 125178848 -30451272 - L3 LINE CR1 -1053 3436 3369 3 1540 466 209 36 9 chr4 125180559 125180670 -30449450 + Charlie22a DNA MER1_type 122 235 -256 3 1540 253 304 18 73 chr4 125180837 125180947 -30449173 + Charlie22a DNA MER1_type 342 445 -46 3 1540 267 133 0 0 chr4 125182245 125182290 -30447830 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1540 268 279 0 75 chr4 125182771 125183065 -30447055 + C-rich Low_complexity Low_complexity 1 271 0 3 1540 2515 29 19 40 chr4 125183115 125183440 -30446680 - L1Md_F3 LINE L1 0 6584 6267 3 1540 414 0 0 0 chr4 125183474 125183520 -30446600 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1540 689 267 89 13 chr4 125183554 125183789 -30446331 - B4A SINE B4 -39 253 1 3 1540 22 35 0 0 chr4 125184042 125184071 -30446049 + AT_rich Low_complexity Low_complexity 1 29 0 3 1540 938 259 65 50 chr4 125184422 125184699 -30445421 + B4 SINE B4 12 292 0 3 1540 205 200 0 0 chr4 125184714 125184749 -30445371 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1540 591 205 55 0 chr4 125184812 125184939 -30445181 + RSINE1 SINE B4 4 137 -28 3 1540 198 348 75 11 chr4 125185070 125185163 -30444957 + L3 LINE CR1 4302 4400 -89 3 1540 331 330 87 0 chr4 125185614 125185729 -30444391 - L2b LINE L2 -20 3355 3231 3 1540 235 281 16 0 chr4 125185904 125185968 -30444152 - MADE2 DNA Mariner -15 65 1 3 1540 255 360 134 0 chr4 125186096 125186268 -30443852 - L2b LINE L2 -517 2902 2708 3 1540 591 162 6 44 chr4 125187417 125187598 -30442522 + (TG)n Simple_repeat Simple_repeat 2 175 0 3 1540 230 241 12 37 chr4 125187621 125187703 -30442417 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1540 24 0 0 0 chr4 125188298 125188322 -30441798 + AT_rich Low_complexity Low_complexity 1 24 0 3 1540 221 234 78 0 chr4 125190449 125190513 -30439607 - MIR3 SINE MIR -27 181 113 3 1540 317 337 20 66 chr4 125192543 125192740 -30437380 - L1MCa LINE L1 -4549 1959 1772 3 1540 283 246 0 0 chr4 125192750 125192815 -30437305 - B1F SINE Alu -84 65 1 3 1540 219 36 0 0 chr4 125193482 125193510 -30436610 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1540 322 271 58 28 chr4 125193698 125193827 -30436293 - MIR SINE MIR -19 249 110 3 1540 375 229 18 54 chr4 125195193 125195304 -30434816 + B4A SINE B4 1 107 -185 3 1540 2115 125 89 30 chr4 125195520 125195892 -30434228 - ORR1B1 LTR MaLR 0 394 1 3 1540 225 310 0 27 chr4 125196380 125196453 -30433667 + MIR SINE MIR 85 155 -107 3 1540 246 147 43 29 chr4 125197084 125197154 -30432966 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 3 1540 199 348 59 0 chr4 125197281 125197399 -30432721 + L2 LINE L2 2822 2946 -473 3 1540 475 206 6 6 chr4 125198308 125198474 -30431646 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 1540 515 53 13 0 chr4 125199204 125199279 -30430841 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1540 426 194 194 0 chr4 125199808 125199901 -30430219 + PB1D10 SINE Alu 1 111 -6 3 1540 579 305 21 26 chr4 125200497 125200689 -30429431 - L4 LINE RTE -1149 880 690 3 1540 462 277 16 43 chr4 125200753 125200938 -30429182 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 1540 210 71 0 0 chr4 125200972 125201000 -30429120 + (CATG)n Simple_repeat Simple_repeat 1 28 0 3 1540 243 246 8 23 chr4 125201046 125201179 -30428941 + (CATA)n Simple_repeat Simple_repeat 2 132 0 3 1540 207 315 0 0 chr4 125201187 125201241 -30428879 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1540 459 343 0 24 chr4 125201813 125201983 -30428137 + MIRb SINE MIR 87 252 -16 3 1540 198 0 0 0 chr4 125202251 125202273 -30427847 + (TCTCTG)n Simple_repeat Simple_repeat 2 23 0 3 1540 197 380 25 0 chr4 125202528 125202607 -30427513 + MIRb SINE MIR 115 195 -73 3 1540 2274 128 49 5 chr4 125202607 125202975 -30427145 + ORR1C2 LTR MaLR 1 384 0 3 1540 290 347 0 40 chr4 125203379 125203529 -30426591 - L2a LINE L2 -1 3425 3282 3 1540 353 256 47 79 chr4 125204303 125204430 -30425690 - MER20 DNA MER1_type -96 123 1 3 1540 560 300 66 127 chr4 125204457 125204820 -30425300 - MTEa LTR MaLR -13 366 26 3 1540 1562 141 45 81 chr4 125205173 125205506 -30424614 - ORR1A4 LTR MaLR -8 321 1 3 1540 231 304 72 29 chr4 125205627 125205766 -30424354 + L3 LINE CR1 2162 2306 -2183 3 1540 512 282 23 0 chr4 125205946 125206077 -30424043 - B3A SINE B2 -64 134 1 3 1540 590 309 30 55 chr4 125206103 125206339 -30423781 + MER2 DNA MER2_type 90 319 -26 3 1540 706 316 36 39 chr4 125206344 125206703 -30423417 - ORR1E LTR MaLR -1 358 1 3 1540 572 283 112 25 chr4 125207890 125208086 -30422034 + ID_B1 SINE B4 3 215 -9 3 1540 181 292 45 30 chr4 125208160 125208227 -30421893 + L2 LINE L2 91 158 -3261 3 1540 181 357 0 14 chr4 125208707 125208778 -30421342 + L3 LINE CR1 3589 3658 -831 3 1540 243 0 0 0 chr4 125209028 125209055 -30421065 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1540 378 0 0 0 chr4 125209071 125209113 -30421007 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1540 216 0 0 0 chr4 125209230 125209254 -30420866 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1540 405 237 90 15 chr4 125209911 125210044 -30420076 + MIR SINE MIR 35 177 -85 3 1540 182 293 25 119 chr4 125211463 125211622 -30418498 + MIR SINE MIR 116 259 -3 3 1540 432 0 0 0 chr4 125212190 125212238 -30417882 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1540 266 366 53 19 chr4 125213420 125213683 -30416437 + LTR16C LTR ERVL 168 472 -17 3 1540 1206 161 32 14 chr4 125213683 125213904 -30416216 - URR1B DNA MER1_type 0 225 1 3 1540 436 322 88 78 chr4 125214315 125214598 -30415522 + L2c LINE L2 3064 3349 -38 3 1540 414 346 0 7 chr4 125214636 125214773 -30415347 + (TGGA)n Simple_repeat Simple_repeat 4 139 0 3 1540 1081 239 39 127 chr4 125214773 125215184 -30414936 - MTE2a LTR MaLR 0 379 5 3 1540 256 329 0 0 chr4 125215185 125215264 -30414856 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 3 1540 732 195 0 0 chr4 125216321 125216475 -30413645 + CT-rich Low_complexity Low_complexity 3 156 0 3 1540 669 266 7 7 chr4 125216480 125216624 -30413496 - B1_Mur1 SINE Alu -5 144 1 3 1540 203 242 29 29 chr4 125216955 125217023 -30413097 + (CCCTG)n Simple_repeat Simple_repeat 1 68 0 3 1540 447 125 0 0 chr4 125217195 125217267 -30412853 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1540 359 53 35 0 chr4 125217269 125217326 -30412794 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 3 1540 419 92 15 0 chr4 125217390 125217455 -30412665 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1540 312 288 94 16 chr4 125217849 125217976 -30412144 + MIR3 SINE MIR 9 145 -63 4 1540 227 308 31 0 chr4 125219322 125219387 -30410733 + L2a LINE L2 3343 3409 -17 4 1540 344 337 56 67 chr4 125220679 125220857 -30409263 + MLT1H LTR MaLR 22 197 -352 4 1540 918 257 19 5 chr4 125220869 125221076 -30409044 + B3 SINE B2 1 210 -6 4 1540 1331 286 31 57 chr4 125221494 125222006 -30408114 - MT2A LTR ERVL -33 500 2 4 1540 1079 284 47 47 chr4 125224783 125225226 -30404894 - L1MB4 LINE L1 0 6180 5738 4 1540 508 329 84 22 chr4 125225309 125225536 -30404584 - LTR16E1 LTR ERVL -17 521 281 4 1540 279 303 150 14 chr4 125226194 125226341 -30403779 + MIRb SINE MIR 56 222 -46 4 1540 2609 188 69 66 chr4 125227286 125227908 -30402212 + RMER20B LTR ERVK 4 627 0 4 1540 327 350 61 10 chr4 125227972 125228168 -30401952 - MLT1K LTR MaLR -34 561 356 4 1540 1107 246 45 116 chr4 125229008 125229412 -30400708 + MTE2a LTR MaLR 5 379 0 4 1540 355 272 37 0 chr4 125230132 125230213 -30399907 + B4A SINE B4 5 88 -204 4 1540 458 246 35 69 chr4 125230230 125230374 -30399746 + MTE2a LTR MaLR 63 201 -178 4 1540 567 273 118 0 chr4 125230422 125230583 -30399537 + B4A SINE B4 108 287 -5 4 1540 211 242 16 31 chr4 125231762 125231826 -30398294 + GA-rich Low_complexity Low_complexity 1 63 0 4 1540 234 269 179 0 chr4 125232093 125232177 -30397943 - MIR SINE MIR -115 161 56 4 1540 567 53 0 0 chr4 125232752 125232827 -30397293 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1540 195 42 0 0 chr4 125232850 125232874 -30397246 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 4 1540 192 125 0 0 chr4 125232883 125232915 -30397205 + (CACG)n Simple_repeat Simple_repeat 4 35 0 4 1540 1105 258 73 11 chr4 125232915 125233189 -30396931 - B4A SINE B4 -1 291 1 4 1540 1657 42 0 0 chr4 125233224 125233416 -30396704 + B2_Mm1a SINE B2 2 193 0 4 1540 580 291 27 1 chr4 125235027 125235225 -30394895 - MIR3 SINE MIR 0 208 9 4 1540 219 250 0 0 chr4 125235469 125235537 -30394583 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1540 1152 249 58 11 chr4 125235538 125235814 -30394306 - B4A SINE B4 0 292 4 4 1540 397 356 48 12 chr4 125236608 125236773 -30393347 + MIRb SINE MIR 62 232 -36 4 1540 202 263 29 69 chr4 125237736 125237838 -30392282 + L2a LINE L2 3298 3395 -31 4 1540 441 148 0 0 chr4 125238434 125238515 -30391605 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1540 759 189 0 0 chr4 125238559 125238795 -30391325 + (TG)n Simple_repeat Simple_repeat 1 236 0 4 1540 202 200 0 0 chr4 125240582 125240622 -30389498 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1540 217 185 18 18 chr4 125242511 125242566 -30387554 + G-rich Low_complexity Low_complexity 5 59 0 4 1540 270 0 0 0 chr4 125242566 125242596 -30387524 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1540 459 0 0 0 chr4 125242596 125242646 -30387474 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1540 333 0 0 0 chr4 125242917 125242954 -30387166 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1540 247 354 0 34 chr4 125242976 125243093 -30387027 + C-rich Low_complexity Low_complexity 4 116 0 4 1540 274 293 0 24 chr4 125243002 125243086 -30387034 + CT-rich Low_complexity Low_complexity 2 83 0 4 1540 318 356 174 24 chr4 125244496 125244703 -30385417 + MIR SINE MIR 25 262 0 4 1540 411 106 0 0 chr4 125244721 125244787 -30385333 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1540 733 206 8 0 chr4 125244795 125244926 -30385194 - B3A SINE B2 -66 132 1 4 1540 405 0 0 0 chr4 125247640 125247685 -30382435 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1540 187 409 7 35 chr4 125248316 125248458 -30381662 + MIR3 SINE MIR 43 180 -28 4 1540 274 270 43 43 chr4 125249087 125249203 -30380917 - MIRb SINE MIR -32 236 121 4 1540 339 127 0 0 chr4 125249420 125249483 -30380637 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1540 509 110 12 0 chr4 125250207 125250289 -30379831 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 4 1540 369 228 13 0 chr4 125250396 125250475 -30379645 + MER96 DNA hAT 4 83 -92 4 1540 246 342 25 44 chr4 125250801 125250960 -30379160 + MIR SINE MIR 96 251 -11 4 1540 361 337 60 12 chr4 125251826 125251994 -30378126 + MIRb SINE MIR 49 224 -44 4 1540 530 285 8 0 chr4 125252692 125252822 -30377298 + B1F2 SINE Alu 3 133 -16 4 1540 2318 109 19 56 chr4 125253067 125253426 -30376694 - ORR1A1 LTR MaLR 0 346 1 4 1540 255 340 40 0 chr4 125253604 125253704 -30376416 - MER94 DNA AcHobo -8 126 23 4 1540 221 304 33 0 chr4 125254014 125254106 -30376014 + L2a LINE L2 3265 3359 -67 4 1540 420 71 0 0 chr4 125254372 125254428 -30375692 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1540 850 268 84 4 chr4 125254431 125254682 -30375438 - B4A SINE B4 -21 271 1 4 1540 210 128 0 0 chr4 125254893 125254932 -30375188 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1540 1202 27 14 14 chr4 125254935 125255083 -30375037 - B1_Mus1 SINE Alu 0 148 1 4 1540 1116 118 42 26 chr4 125255432 125255623 -30374497 - B2_Mm2 SINE B2 0 195 2 4 1540 987 74 0 0 chr4 125257135 125257270 -30372850 - B1_Mus1 SINE Alu 0 148 14 4 1540 378 198 28 9 chr4 125257279 125257386 -30372734 + CT-rich Low_complexity Low_complexity 3 111 0 4 1540 258 310 16 89 chr4 125257392 125257516 -30372604 - PB1D10 SINE Alu -2 115 1 4 1540 191 152 0 21 chr4 125258357 125258404 -30371716 + G-rich Low_complexity Low_complexity 2 47 0 4 1540 420 20 0 0 chr4 125260259 125260308 -30369812 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1540 382 296 0 20 chr4 125260964 125261063 -30369057 + B3 SINE B2 3 99 -117 4 1540 1745 239 42 46 chr4 125261063 125261581 -30368539 - RMER20A LTR ERVK 0 516 1 4 1540 256 287 86 38 chr4 125261581 125261678 -30368442 + B3A SINE B2 97 198 0 4 1540 761 256 61 15 chr4 125263364 125263562 -30366558 + B3 SINE B2 7 213 -3 4 1540 1077 137 60 5 chr4 125263568 125263752 -30366368 + B2_Mm2 SINE B2 1 194 -1 4 1540 254 214 40 79 chr4 125263844 125263920 -30366200 + BC1_Mm scRNA scRNA 2 74 -78 4 1540 227 221 6 37 chr4 125266015 125266183 -30363937 + GA-rich Low_complexity Low_complexity 1 162 0 4 1540 220 300 35 13 chr4 125268607 125268714 -30361406 - MIR3 SINE MIR -23 185 83 4 1540 546 246 27 86 chr4 125270241 125270428 -30359692 - MER104 DNA Tc2 -5 176 1 4 1540 232 281 135 0 chr4 125270435 125270524 -30359596 - MIRb SINE MIR 0 268 168 4 1540 255 196 18 0 chr4 125271424 125271480 -30358640 + MMTV-int LTR ERVK 6811 6867 -386 4 1540 252 0 0 0 chr4 125274297 125274325 -30355795 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1540 608 257 66 0 chr4 125274643 125274795 -30355325 + RSINE1 SINE B4 2 163 -2 4 1540 396 0 0 0 chr4 125277001 125277045 -30353075 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1540 235 305 113 60 chr4 125277262 125277412 -30352708 - LTR16E1 LTR ERVL -48 490 333 4 1540 333 125 0 0 chr4 125279026 125279082 -30351038 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 4 1540 573 260 84 61 chr4 125279271 125279484 -30350636 - Tigger5 DNA MER2_type -2169 237 20 4 1540 1164 213 112 41 chr4 125280304 125280405 -30349715 + B4 SINE B4 3 117 -175 4 1540 2373 138 60 0 chr4 125280405 125280774 -30349346 - ORR1B1 LTR MaLR -3 391 1 4 1540 1164 213 112 41 chr4 125280774 125280941 -30349179 + B4 SINE B4 118 290 -2 4 1540 294 360 37 56 chr4 125281223 125281385 -30348735 - MER63A DNA AcHobo -51 159 1 4 1540 255 93 0 0 chr4 125281689 125281732 -30348388 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1540 266 368 21 0 chr4 125282392 125282487 -30347633 + MER58B DNA MER1_type 245 341 0 4 1540 692 167 8 8 chr4 125283032 125283153 -30346967 - B1_Mus1 SINE Alu 0 148 28 4 1540 1752 16 0 0 chr4 125283203 125283396 -30346724 + B2_Mm1a SINE B2 1 193 0 4 1540 24 0 0 0 chr4 125283419 125283443 -30346677 + AT_rich Low_complexity Low_complexity 1 24 0 4 1540 321 269 28 65 chr4 125283485 125283608 -30346512 - B4A SINE B4 -1 291 174 4 1540 243 218 91 0 chr4 125283670 125283725 -30346395 - B3A SINE B2 -135 63 4 4 1540 231 157 0 89 chr4 125284137 125284193 -30345927 - L1ME4a LINE L1 -106 6018 5968 4 1540 634 288 45 24 chr4 125284193 125284481 -30345639 - L1M5 LINE L1 -1542 4604 4311 4 1540 258 81 0 0 chr4 125284580 125284617 -30345503 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1540 501 253 8 185 chr4 125284679 125284922 -30345198 - B4A SINE B4 -81 211 12 4 1540 4262 61 40 9 chr4 125285742 125286285 -30343835 - LTRIS2 LTR ERV1 0 564 5 4 1540 417 267 126 160 chr4 125286295 125286388 -30343732 - B4 SINE B4 -6 286 212 4 1540 1103 70 103 11 chr4 125286388 125286562 -30343558 - B2_Mm2 SINE B2 -1 194 5 4 1540 417 267 126 160 chr4 125286562 125286762 -30343358 - B4 SINE B4 -81 211 3 4 1540 1402 296 92 15 chr4 125286807 125287490 -30342630 - L1MC1 LINE L1 -3 6330 5595 4 1540 436 172 109 54 chr4 125287490 125287582 -30342538 + B1F SINE Alu 37 133 -16 4 1540 746 263 38 0 chr4 125287689 125287875 -30342245 - MTEa LTR MaLR -1 378 186 4 1540 650 172 0 8 chr4 125287916 125288045 -30342075 + CT-rich Low_complexity Low_complexity 3 130 0 4 1540 890 118 0 22 chr4 125288057 125288196 -30341924 - B1_Mur4 SINE Alu -8 142 7 4 1540 346 232 51 195 chr4 125288084 125288205 -30341915 - MT2B2 LTR ERVL -320 264 85 4 1540 669 180 36 0 chr4 125288205 125288316 -30341804 - MTEa LTR MaLR -261 118 4 4 1540 346 232 51 195 chr4 125288316 125288341 -30341779 - MT2B2 LTR ERVL -320 84 45 4 1540 917 240 242 2 chr4 125288357 125288838 -30341282 - L1MC1 LINE L1 -897 5436 4840 4 1540 309 238 44 55 chr4 125288828 125289010 -30341110 - L1MC1 LINE L1 -1638 4508 4329 4 1540 517 331 67 31 chr4 125289019 125289405 -30340715 - L1MB3 LINE L1 -273 6085 5686 4 1540 620 279 12 12 chr4 125289489 125289652 -30340468 - RSINE1 SINE B4 0 165 3 4 1540 551 245 6 32 chr4 125289663 125289819 -30340301 - L1MB3 LINE L1 -703 5655 5504 4 1540 2201 194 7 73 chr4 125289905 125290355 -30339765 - MTC LTR MaLR 0 421 2 4 1540 1039 206 42 0 chr4 125290357 125290546 -30339574 - B3 SINE B2 -15 201 5 4 1540 612 317 71 80 chr4 125290548 125290898 -30339222 - ORR1E LTR MaLR -12 347 1 5 1540 998 200 21 5 chr4 125290933 125291119 -30339001 - B3 SINE B2 -27 189 1 5 1540 487 296 59 30 chr4 125291155 125291426 -30338694 - L1MB3 LINE L1 -859 5456 5178 4 1540 558 336 21 15 chr4 125291439 125291774 -30338346 - L1MB3 LINE L1 -1410 4905 4569 4 1540 355 359 132 0 chr4 125291792 125291951 -30338169 + B3A SINE B2 1 180 -18 5 1540 200 260 0 39 chr4 125291951 125292003 -30338117 + (CATG)n Simple_repeat Simple_repeat 1 50 0 5 1540 360 275 81 39 chr4 125292103 125292512 -30337608 - L1MB3 LINE L1 -1781 4534 4316 4 1540 1141 134 26 87 chr4 125292516 125292582 -30337538 - URR1A DNA MER1_type 0 226 166 5 1540 2049 149 74 42 chr4 125292582 125292651 -30337469 - ORR1B1 LTR MaLR 0 394 327 5 1540 270 0 0 0 chr4 125292651 125292681 -30337439 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 5 1540 1184 36 7 0 chr4 125292683 125292823 -30337297 - B1_Mus1 SINE Alu -6 142 2 5 1540 2049 149 74 42 chr4 125292823 125293129 -30336991 - ORR1B1 LTR MaLR -68 326 4 5 1540 1141 134 26 87 chr4 125293129 125293291 -30336829 - URR1A DNA MER1_type -61 165 12 5 1540 396 0 0 0 chr4 125293450 125293494 -30336626 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1540 1102 227 92 10 chr4 125293501 125293902 -30336218 - L1MB3 LINE L1 -4629 1879 1446 4 1540 648 70 0 0 chr4 125293912 125293998 -30336122 + (TTC)n Simple_repeat Simple_repeat 1 86 0 5 1540 1050 110 7 0 chr4 125293999 125294145 -30335975 - B2_Mm2 SINE B2 -46 149 3 5 1540 585 282 160 24 chr4 125294231 125294682 -30335438 - L1MB3 LINE L1 -5148 1360 849 4 1540 744 12 0 0 chr4 125294740 125294825 -30335295 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1540 186 167 0 0 chr4 125294897 125294933 -30335187 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1540 533 289 18 12 chr4 125295045 125295213 -30334907 - B4A SINE B4 -123 169 1 5 1540 789 311 110 12 chr4 125295236 125295662 -30334458 - L1MB3 LINE L1 -5842 666 199 4 1540 571 319 80 80 chr4 125295680 125296031 -30334089 - ORR1E LTR MaLR -8 351 1 5 1540 641 300 128 27 chr4 125296203 125296617 -30333503 + L1MB7 LINE L1 5723 6178 -6 5 1540 938 129 43 0 chr4 125296799 125296938 -30333182 + B1_Mm SINE Alu 1 145 -2 5 1540 1816 204 86 147 chr4 125296966 125297679 -30332441 - Lx9 LINE L1 -4 7640 6972 5 1540 247 288 123 0 chr4 125298302 125298375 -30331745 + ID4_ SINE ID 2 83 0 5 1540 343 367 48 33 chr4 125298498 125298771 -30331349 - L1MC LINE L1 -1315 4831 4555 5 1540 500 226 0 0 chr4 125298871 125298973 -30331147 - PB1D9 SINE Alu -16 104 3 5 1540 946 130 14 14 chr4 125299148 125299296 -30330824 + B1_Mur4 SINE Alu 1 148 -2 5 1540 336 64 0 0 chr4 125299368 125299415 -30330705 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1540 1446 276 82 20 chr4 125299429 125299931 -30330189 + Lx8 LINE L1 6592 7124 -349 5 1540 21 0 0 0 chr4 125300150 125300171 -30329949 + AT_rich Low_complexity Low_complexity 1 21 0 5 1540 432 314 19 10 chr4 125300303 125300509 -30329611 - L1M5 LINE L1 -2209 3937 3730 5 1540 410 262 79 0 chr4 125301013 125301139 -30328981 + B1F SINE Alu 1 136 -13 5 1540 290 284 141 78 chr4 125301291 125301482 -30328638 - L1MA6 LINE L1 -14 6277 6075 5 1540 183 180 0 0 chr4 125301986 125302031 -30328089 + T-rich Low_complexity Low_complexity 10 54 0 5 1540 1003 136 7 0 chr4 125302031 125302178 -30327942 - B1_Mus1 SINE Alu 0 148 1 5 1540 978 159 106 20 chr4 125302205 125302404 -30327716 - B3 SINE B2 0 216 1 5 1540 958 250 58 0 chr4 125302550 125302810 -30327310 + MER2 DNA MER2_type 71 345 0 5 1540 187 196 0 42 chr4 125303113 125303161 -30326959 + L2b LINE L2 3326 3371 -4 5 1540 204 40 0 0 chr4 125303666 125303691 -30326429 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1540 942 210 180 0 chr4 125304100 125304400 -30325720 - MTD LTR MaLR 0 370 1 5 1540 235 227 40 46 chr4 125304656 125304750 -30325370 - L2b LINE L2 -227 3160 3076 5 1541 349 291 62 52 chr4 125305334 125305651 -30324469 - L1M5 LINE L1 -496 5744 5406 5 1541 332 289 132 58 chr4 125305811 125306211 -30323909 - L1M5 LINE L1 -774 5372 4943 5 1541 224 222 93 0 chr4 125306431 125306485 -30323635 + ID4 SINE ID 6 64 -19 5 1541 360 294 109 99 chr4 125308363 125308665 -30321455 - L2 LINE L2 -351 3068 2764 5 1541 1288 212 65 71 chr4 125308748 125309073 -30321047 + MTE2a LTR MaLR 57 379 0 5 1541 185 255 0 41 chr4 125309328 125309377 -30320743 - MIRb SINE MIR -99 169 123 5 1541 248 132 57 0 chr4 125310541 125310594 -30319526 + C-rich Low_complexity Low_complexity 4 59 0 5 1541 1106 150 21 11 chr4 125311666 125311855 -30318265 - URR1A DNA MER1_type 0 226 36 5 1541 254 331 21 78 chr4 125312927 125312992 -30317128 - ID_B1 SINE B4 -80 144 12 5 1541 286 268 0 66 chr4 125312992 125313068 -30317052 - ID4 SINE ID -1 82 12 5 1541 219 36 0 0 chr4 125313502 125313530 -30316590 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1541 289 318 51 44 chr4 125313943 125314101 -30316019 - MLT1H LTR MaLR -17 532 374 5 1541 236 343 37 64 chr4 125314197 125314306 -30315814 - MLT1H LTR MaLR -347 142 37 5 1541 274 311 82 151 chr4 125315748 125315907 -30314213 - MLT1K LTR MaLR -385 210 63 5 1541 271 200 0 0 chr4 125317221 125317266 -30312854 + PB1D10 SINE Alu 46 90 -27 5 1541 222 152 0 0 chr4 125317237 125317270 -30312850 + PB1D9 SINE Alu 65 97 -23 5 1541 726 268 82 5 chr4 125317313 125317497 -30312623 + ID_B1 SINE B4 14 211 -13 5 1541 244 276 129 18 chr4 125319028 125319171 -30310949 + MIR SINE MIR 22 178 -90 5 1541 300 356 22 29 chr4 125319744 125319880 -30310240 - L2c LINE L2 -228 3159 3025 5 1541 742 267 140 39 chr4 125320809 125321066 -30309054 + B4A SINE B4 8 290 -2 5 1541 191 393 66 7 chr4 125321124 125321260 -30308860 + MIR SINE MIR 89 232 -30 5 1541 227 276 70 20 chr4 125321327 125321427 -30308693 - MIRb SINE MIR -82 186 82 5 1541 448 298 91 88 chr4 125322850 125323181 -30306939 + ORR1E LTR MaLR 22 353 -6 5 1541 1120 117 153 0 chr4 125323246 125323442 -30306678 - URR1A DNA MER1_type 0 226 1 5 1541 310 341 64 43 chr4 125324225 125324366 -30305754 - MLT1A0 LTR MaLR -19 346 203 5 1541 669 312 76 57 chr4 125324724 125324773 -30305347 - MER2 DNA MER2_type -21 324 281 5 1541 1974 166 67 25 chr4 125324773 125325175 -30304945 - MTD LTR MaLR 0 419 1 5 1541 669 312 76 57 chr4 125325175 125325400 -30304720 - MER2 DNA MER2_type -65 280 48 5 1541 567 0 0 0 chr4 125325400 125325463 -30304657 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1541 669 312 76 57 chr4 125325463 125325503 -30304617 - MER2 DNA MER2_type -298 47 3 5 1541 365 290 97 0 chr4 125325953 125326098 -30304022 - LTR37B LTR ERV1 -124 344 186 5 1541 195 206 168 89 chr4 125326686 125326787 -30303333 - MIRc SINE MIR -117 151 43 5 1541 264 263 26 13 chr4 125327132 125327209 -30302911 + CT-rich Low_complexity Low_complexity 2 79 0 5 1541 270 0 0 0 chr4 125328339 125328369 -30301751 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1541 333 0 0 0 chr4 125328369 125328405 -30301715 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1541 192 125 0 0 chr4 125328405 125328436 -30301684 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1541 270 0 0 0 chr4 125329424 125329454 -30300666 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1541 489 333 109 16 chr4 125329486 125329733 -30300387 - B4A SINE B4 -18 274 5 5 1541 216 246 0 21 chr4 125329736 125329798 -30300322 + MIRc SINE MIR 103 165 -103 5 1541 277 148 62 62 chr4 125330184 125330249 -30299871 - PB1D10 SINE Alu -37 112 48 5 1541 182 256 0 0 chr4 125330830 125330869 -30299251 + MIRb SINE MIR 133 171 -97 5 1541 768 295 32 9 chr4 125330932 125331151 -30298969 + B4A SINE B4 5 228 -64 5 1541 1192 43 7 0 chr4 125331152 125331292 -30298828 + B1_Mus2 SINE Alu 1 141 -6 5 1541 8180 41 2 0 chr4 125331303 125332274 -30297846 + L1Md_F2 LINE L1 5607 6579 -3 5 1541 36 0 0 0 chr4 125332276 125332312 -30297808 + AT_rich Low_complexity Low_complexity 1 36 0 5 1541 1234 48 0 13 chr4 125332316 125332465 -30297655 + B1_Mus1 SINE Alu 1 147 -1 5 1541 280 246 68 55 chr4 125332514 125332587 -30297533 + B4A SINE B4 219 292 0 5 1541 299 283 128 29 chr4 125332960 125333062 -30297058 - MIR SINE MIR -72 196 85 5 1541 619 276 53 21 chr4 125335221 125335410 -30294710 - MER117 DNA MER1_type -2 195 1 5 1541 824 245 0 0 chr4 125336128 125336291 -30293829 - RSINE1 SINE B4 -2 163 1 5 1541 21 0 0 0 chr4 125338808 125338829 -30291291 + AT_rich Low_complexity Low_complexity 1 21 0 5 1541 583 184 18 0 chr4 125339099 125339208 -30290912 + B1_Mur2 SINE Alu 2 112 -37 5 1541 237 279 96 35 chr4 125342160 125342275 -30287845 + MER91A DNA Tip100 1 122 -74 5 1541 374 308 56 19 chr4 125343096 125343258 -30286862 + MIRb SINE MIR 87 254 -14 5 1541 273 289 24 12 chr4 125343855 125343939 -30286181 - MER5A DNA MER1_type -72 117 33 5 1541 711 288 30 17 chr4 125344200 125344430 -30285690 + B4 SINE B4 1 233 -59 5 1541 10614 45 2 1 chr4 125344534 125346587 -30283533 - L1Md_F2 LINE L1 0 6582 4528 5 1541 4515 40 10 0 chr4 125346574 125347169 -30282951 + L1Md_F2 LINE L1 3927 4527 -1356 5 1541 523 183 29 9 chr4 125347171 125347276 -30282844 - B1F2 SINE Alu -1 148 42 5 1541 271 222 0 0 chr4 125347335 125347389 -30282731 - PB1D9 SINE Alu -66 54 1 5 1541 223 338 38 0 chr4 125347389 125347406 -30282714 - ID_B1 SINE B4 -77 122 65 5 1541 254 337 22 0 chr4 125347522 125347614 -30282506 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1541 472 282 40 0 chr4 125347616 125347740 -30282380 + ID_B1 SINE B4 84 212 -12 5 1541 558 29 0 0 chr4 125348879 125348947 -30281173 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1541 381 22 0 0 chr4 125348999 125349045 -30281075 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1541 234 0 0 0 chr4 125349097 125349123 -30280997 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1541 232 269 152 40 chr4 125349751 125349912 -30280208 + MIRc SINE MIR 42 203 -59 5 1541 201 381 38 9 chr4 125350030 125350136 -30279984 + MIRc SINE MIR 115 223 -45 5 1541 252 0 0 0 chr4 125351709 125351737 -30278383 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1541 283 262 0 47 chr4 125351741 125351805 -30278315 - ID4_ SINE ID -11 72 12 5 1541 1583 238 48 3 chr4 125353391 125353745 -30276375 - MTEa LTR MaLR -4 375 6 5 1541 199 301 40 79 chr4 125354848 125354949 -30275171 - L2a LINE L2 -44 3382 3286 5 1541 826 154 186 31 chr4 125355140 125355334 -30274786 - URR1B DNA MER1_type 0 225 2 6 1541 321 26 0 0 chr4 125356075 125356113 -30274007 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1541 531 226 0 0 chr4 125356113 125356215 -30273905 - RSINE1 SINE B4 -25 140 39 6 1541 278 351 16 89 chr4 125356226 125356417 -30273703 - L2a LINE L2 -1 3425 3249 6 1541 226 341 0 11 chr4 125357046 125357138 -30272982 - RSINE1 SINE B4 0 165 75 6 1541 412 303 58 22 chr4 125357130 125357308 -30272812 - B4A SINE B4 -5 219 29 6 1541 887 275 104 60 chr4 125357985 125358368 -30271752 - MLT1C LTR MaLR 0 467 68 6 1541 332 255 20 39 chr4 125359317 125359419 -30270701 + MIR3 SINE MIR 109 208 0 6 1541 184 329 85 0 chr4 125360211 125360293 -30269827 + L2b LINE L2 3278 3366 -9 6 1541 464 310 18 71 chr4 125360536 125360706 -30269414 - RSINE1 SINE B4 0 165 5 6 1541 458 309 11 17 chr4 125361075 125361253 -30268867 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 6 1541 201 175 0 0 chr4 125361259 125361299 -30268821 + (TGGG)n Simple_repeat Simple_repeat 2 41 0 6 1541 468 0 0 0 chr4 125362088 125362140 -30267980 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1541 789 306 53 0 chr4 125362156 125362401 -30267719 - B4A SINE B4 -34 258 1 6 1541 827 267 94 73 chr4 125362773 125363048 -30267072 + B4 SINE B4 2 282 -10 6 1541 221 250 0 0 chr4 125363056 125363100 -30267020 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1541 391 336 21 0 chr4 125365009 125365149 -30264971 - MIRb SINE MIR -66 202 60 6 1541 396 59 0 0 chr4 125365783 125365834 -30264286 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1541 207 218 0 0 chr4 125365839 125365894 -30264226 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1541 652 269 6 13 chr4 125365914 125366072 -30264048 + RSINE1 SINE B4 3 159 -6 6 1541 1113 76 0 0 chr4 125366105 125366262 -30263858 + (TAGA)n Simple_repeat Simple_repeat 1 157 0 6 1541 388 352 20 60 chr4 125367776 125368154 -30261966 - L1ME5 LINE L1 -262 5932 5566 6 1541 392 252 75 37 chr4 125369069 125369176 -30260944 + PB1D7 SINE Alu 1 111 -9 6 1541 328 151 0 0 chr4 125369230 125369283 -30260837 + RSINE1 SINE B4 8 60 -105 6 1541 207 204 0 0 chr4 125369383 125369427 -30260693 + GA-rich Low_complexity Low_complexity 3 46 0 6 1541 303 130 18 18 chr4 125370343 125370398 -30259722 - HAL1-3A_ME LINE L1 -831 2027 1973 6 1541 512 164 9 0 chr4 125370401 125370511 -30259609 + (TG)n Simple_repeat Simple_repeat 2 112 0 6 1541 959 108 16 8 chr4 125370522 125370911 -30259209 + (TG)n Simple_repeat Simple_repeat 1 392 0 6 1541 258 333 35 28 chr4 125370919 125371064 -30259056 - MER5A DNA MER1_type -6 183 38 6 1541 324 288 143 25 chr4 125372020 125372216 -30257904 - MIRb SINE MIR -21 247 29 6 1541 360 0 0 0 chr4 125372322 125372362 -30257758 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1541 727 221 115 6 chr4 125372403 125372585 -30257535 + ID_B1 SINE B4 2 203 -21 6 1541 235 298 36 0 chr4 125372585 125372669 -30257451 + GA-rich Low_complexity Low_complexity 2 88 0 6 1541 674 87 10 0 chr4 125372673 125372776 -30257344 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1541 211 146 47 141 chr4 125372780 125372844 -30257276 - MER5A DNA MER1_type -125 64 7 6 1541 354 45 0 0 chr4 125373442 125373486 -30256634 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1541 455 296 93 0 chr4 125373929 125374101 -30256019 - MIRb SINE MIR -23 245 58 6 1541 841 280 87 19 chr4 125374438 125374704 -30255416 + B4A SINE B4 7 290 -2 6 1541 281 346 52 15 chr4 125375536 125375671 -30254449 + MIRc SINE MIR 25 164 -104 6 1541 501 191 45 0 chr4 125375939 125376049 -30254071 + B1_Mur1 SINE Alu 35 149 0 6 1541 219 358 0 0 chr4 125376147 125376228 -30253892 + MIR SINE MIR 107 187 -75 6 1541 315 340 46 26 chr4 125376392 125376543 -30253577 + MER102b DNA MER1_type 77 230 -111 6 1541 769 221 92 6 chr4 125376733 125376906 -30253214 - B4 SINE B4 -97 195 8 6 1541 250 175 0 87 chr4 125377107 125377176 -30252944 - MIRc SINE MIR -95 173 111 6 1541 502 249 126 26 chr4 125379202 125379392 -30250728 - MLT1F2 LTR MaLR -1 652 381 6 1541 338 321 85 0 chr4 125380822 125381015 -30249105 + MIRc SINE MIR 18 224 -38 6 1541 858 230 28 41 chr4 125381072 125381290 -30248830 + ID_B1 SINE B4 1 215 -9 6 1541 273 250 0 98 chr4 125382954 125383056 -30247064 + L1MC5 LINE L1 7834 7925 -36 6 1541 379 309 34 61 chr4 125383162 125383310 -30246810 - MER5B DNA MER1_type -21 157 14 6 1541 199 330 70 0 chr4 125383832 125383932 -30246188 + L2 LINE L2 2961 3067 -352 6 1541 837 159 225 11 chr4 125384060 125384238 -30245882 - B3 SINE B2 0 216 1 6 1541 194 128 0 25 chr4 125384648 125384688 -30245432 + C-rich Low_complexity Low_complexity 6 44 0 6 1541 387 0 0 0 chr4 125387255 125387298 -30242822 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1541 252 0 0 0 chr4 125387298 125387325 -30242795 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1541 468 0 0 0 chr4 125387443 125387495 -30242625 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1541 342 45 0 0 chr4 125387732 125387776 -30242344 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1541 720 33 0 0 chr4 125388026 125388117 -30242003 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 6 1541 396 0 0 0 chr4 125389285 125389329 -30240791 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1541 215 211 17 17 chr4 125389717 125389775 -30240345 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1541 1239 164 0 62 chr4 125392170 125392411 -30237709 - URR1A DNA MER1_type 0 226 1 6 1541 327 247 43 46 chr4 125393069 125393197 -30236923 + MIR SINE MIR 56 186 -90 6 1541 270 302 20 20 chr4 125394065 125394163 -30235957 - LTR16C LTR ERVL -197 292 195 6 1541 303 231 95 9 chr4 125394253 125394358 -30235762 - MIRc SINE MIR -125 143 30 6 1541 270 225 182 26 chr4 125396463 125396619 -30233501 + MIRm SINE MIR 3 180 -88 6 1541 273 270 69 63 chr4 125398207 125398402 -30231718 + MIR SINE MIR 10 206 -62 6 1541 613 266 196 11 chr4 125398440 125398710 -30231410 - MER2 DNA MER2_type 0 345 26 6 1541 208 209 0 0 chr4 125398722 125398765 -30231355 + MIRm SINE MIR 232 274 -2 6 1541 1368 131 9 35 chr4 125400054 125400284 -30229836 - URR1B DNA MER1_type 0 225 2 6 1541 244 262 94 69 chr4 125400302 125400462 -30229658 + LTR16A1 LTR ERVL 279 442 -14 6 1541 410 216 22 50 chr4 125401517 125401635 -30228485 + PB1D10 SINE Alu 5 120 0 6 1541 342 115 0 0 chr4 125401642 125401694 -30228426 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 6 1541 261 312 0 15 chr4 125401816 125401881 -30228239 + ID_B1 SINE B4 81 144 -80 6 1541 1950 77 42 69 chr4 125401887 125402167 -30227953 + ORR1A3 LTR MaLR 1 285 -41 6 1541 1159 68 0 0 chr4 125402167 125402314 -30227806 + B1_Mus1 SINE Alu 2 148 0 6 1541 1950 77 42 69 chr4 125402314 125402368 -30227752 + ORR1A3 LTR MaLR 286 326 0 6 1541 288 188 157 45 chr4 125402368 125402452 -30227668 + B1F SINE Alu 48 141 -8 6 1541 220 320 13 0 chr4 125402455 125402518 -30227602 + GA-rich Low_complexity Low_complexity 5 68 0 6 1541 561 76 0 0 chr4 125402518 125402597 -30227523 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 6 1541 220 320 13 0 chr4 125402597 125402611 -30227509 + polypurine Low_complexity Low_complexity 69 82 0 6 1541 24 0 0 0 chr4 125403368 125403392 -30226728 + AT_rich Low_complexity Low_complexity 1 24 0 6 1541 244 254 16 0 chr4 125403529 125403592 -30226528 - MLT1D LTR MaLR -71 434 371 6 1541 187 95 0 67 chr4 125403619 125403664 -30226456 + CT-rich Low_complexity Low_complexity 4 45 0 6 1541 1141 305 48 31 chr4 125403963 125404382 -30225738 + MER63B DNA AcHobo 9 434 -2 6 1541 368 335 82 10 chr4 125405727 125405935 -30224185 + MIRb SINE MIR 38 260 -8 6 1541 981 211 62 59 chr4 125406058 125406330 -30223790 + B4A SINE B4 7 279 -13 6 1541 369 0 0 0 chr4 125406336 125406377 -30223743 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1541 244 254 71 0 chr4 125407555 125407642 -30222478 - MIRc SINE MIR -138 130 37 6 1541 227 0 91 0 chr4 125407794 125407827 -30222293 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 6 1541 414 0 0 0 chr4 125407946 125407992 -30222128 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1541 192 111 0 0 chr4 125408037 125408073 -30222047 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1541 829 281 72 22 chr4 125408084 125408361 -30221759 - B4A SINE B4 -1 291 1 6 1541 226 280 77 39 chr4 125408540 125408670 -30221450 - LTR79 LTR ERVL -256 271 137 6 1541 499 66 13 13 chr4 125408799 125408876 -30221244 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1541 490 346 115 12 chr4 125409471 125409802 -30220318 + MLT1A0 LTR MaLR 1 365 0 6 1541 321 314 32 24 chr4 125409926 125410050 -30220070 - MLT1I LTR MaLR -129 282 158 6 1541 790 293 40 47 chr4 125410054 125410330 -30219790 + B4A SINE B4 1 274 -18 6 1541 405 0 0 0 chr4 125410375 125410420 -30219700 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1541 267 103 0 0 chr4 125410694 125410733 -30219387 + (CCTG)n Simple_repeat Simple_repeat 4 42 0 6 1541 228 283 121 0 chr4 125411055 125411154 -30218966 + MER33 DNA MER1_type 35 145 -179 6 1541 1157 163 0 46 chr4 125411170 125411389 -30218731 - B3 SINE B2 -5 211 3 6 1541 348 24 0 0 chr4 125411511 125411552 -30218568 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1541 384 77 0 0 chr4 125411759 125411811 -30218309 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 6 1541 810 267 65 28 chr4 125411823 125411913 -30218207 - ID_B1 SINE B4 0 224 127 6 1541 2653 60 87 5 chr4 125411913 125412283 -30217837 - MTB LTR MaLR 0 400 1 7 1541 810 267 65 28 chr4 125412283 125412408 -30217712 - ID_B1 SINE B4 -98 126 1 6 1541 312 187 0 157 chr4 125412544 125412633 -30217487 + MER33 DNA MER1_type 250 324 0 6 1541 435 264 63 16 chr4 125413481 125413608 -30216512 + MIR SINE MIR 52 184 -78 7 1541 216 317 132 36 chr4 125414495 125414684 -30215436 + MIR SINE MIR 19 229 -39 7 1541 1684 146 39 13 chr4 125415600 125415905 -30214215 + RMER20A LTR ERVK 13 325 -191 7 1541 237 319 90 21 chr4 125416300 125416444 -30213676 - MIRb SINE MIR -29 239 86 7 1541 672 13 0 0 chr4 125416645 125416722 -30213398 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 7 1541 392 366 49 5 chr4 125417274 125417477 -30212643 - RMER15 LTR ERVL -12 563 352 7 1541 213 307 159 0 chr4 125417877 125417965 -30212155 - L2b LINE L2 -3 3423 3322 7 1541 333 275 40 74 chr4 125418109 125418258 -30211862 - L2b LINE L2 -296 3079 2936 7 1541 201 323 154 46 chr4 125418648 125418778 -30211342 - MIRb SINE MIR -96 172 29 7 1541 391 236 7 7 chr4 125418900 125419041 -30211079 + (TCCA)n Simple_repeat Simple_repeat 4 144 0 7 1541 235 266 18 0 chr4 125419107 125419220 -30210900 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 7 1541 388 286 80 20 chr4 125420392 125420542 -30209578 - RSINE1 SINE B4 -4 161 3 7 1541 416 266 43 48 chr4 125420875 125421084 -30209036 - MIR SINE MIR -19 243 36 7 1541 1131 93 12 0 chr4 125421516 125421677 -30208443 - B2_Mm2 SINE B2 -31 164 2 7 1541 261 213 107 0 chr4 125421952 125422027 -30208093 + L2c LINE L2 3082 3164 -223 7 1541 180 152 0 0 chr4 125422233 125422266 -30207854 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 7 1541 346 218 250 7 chr4 125422802 125422950 -30207170 + MLT1D LTR MaLR 318 501 -4 7 1541 232 340 144 61 chr4 125423315 125423544 -30206576 + L2 LINE L2 2592 2839 -580 7 1541 473 228 42 50 chr4 125423580 125423700 -30206420 + PB1D7 SINE Alu 1 119 -1 7 1541 324 0 0 0 chr4 125424119 125424155 -30205965 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1541 504 0 0 0 chr4 125424155 125424210 -30205910 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1541 1284 152 32 72 chr4 125424833 125425110 -30205010 - MTC LTR MaLR 0 421 156 7 1541 24746 131 41 19 chr4 125425112 125427746 -30202374 - Lx LINE L1 -88 6566 3851 7 1541 207 0 0 0 chr4 125427746 125427769 -30202351 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1541 24746 147 30 24 chr4 125427769 125427805 -30202315 - L1_Mm LINE L1 -2033 3850 3850 7 1541 1132 68 0 0 chr4 125427805 125427952 -30202168 - B1_Mm SINE Alu 0 147 1 7 1541 24746 131 30 25 chr4 125427952 125431365 -30198755 - Lx LINE L1 -2033 3850 399 7 1541 273 259 147 0 chr4 125431512 125431628 -30198492 - MLT1K LTR MaLR -11 584 452 7 1541 1689 240 112 88 chr4 125432609 125433271 -30196849 - RMER13A LTR ERVK 0 860 183 7 1541 279 343 78 0 chr4 125433573 125433675 -30196445 + MER81 DNA AcHobo 1 110 -4 7 1541 254 292 0 80 chr4 125434447 125434557 -30195563 + polypyrimidine Low_complexity Low_complexity 64 163 0 7 1541 351 0 0 0 chr4 125434557 125434596 -30195524 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1541 254 292 0 80 chr4 125434596 125434660 -30195460 + polypyrimidine Low_complexity Low_complexity 3 63 0 7 1541 198 0 0 0 chr4 125434668 125434690 -30195430 + (CG)n Simple_repeat Simple_repeat 1 22 0 7 1541 324 0 0 0 chr4 125434690 125434725 -30195395 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1541 526 289 67 117 chr4 125434726 125435008 -30195112 - B4A SINE B4 -18 274 7 7 1542 2401 142 34 12 chr4 125436777 125436864 -30193256 + MTC LTR MaLR 1 93 -328 7 1542 4120 109 48 58 chr4 125436864 125437681 -30192439 + RMER17D2 LTR ERVK 1 809 0 7 1542 2401 142 34 12 chr4 125437681 125438005 -30192115 + MTC LTR MaLR 94 421 0 7 1542 207 0 0 0 chr4 125439374 125439397 -30190723 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1542 397 266 35 9 chr4 125439703 125439817 -30190303 + PB1D7 SINE Alu 1 117 -3 7 1542 335 294 75 21 chr4 125440058 125440250 -30189870 - L1M5 LINE L1 -573 5669 5470 7 1542 331 282 184 23 chr4 125440771 125440989 -30189131 + L1MEd LINE L1 833 1085 -5034 7 1542 371 68 17 0 chr4 125441206 125441265 -30188855 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1542 560 251 76 11 chr4 125441438 125441623 -30188497 + B3A SINE B2 2 198 0 7 1542 575 214 199 36 chr4 125441811 125441848 -30188272 - B3A SINE B2 -4 191 143 7 1542 777 67 0 0 chr4 125441848 125441952 -30188168 + (TC)n Simple_repeat Simple_repeat 1 104 0 7 1542 306 0 0 0 chr4 125441953 125441987 -30188133 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1542 575 193 181 22 chr4 125441987 125442111 -30188009 - B3A SINE B2 -49 149 1 7 1542 422 272 76 76 chr4 125442292 125442463 -30187657 + MER33 DNA MER1_type 154 324 0 7 1542 433 380 32 18 chr4 125442471 125442691 -30187429 + MER58A DNA MER1_type 2 224 0 7 1542 222 37 0 0 chr4 125442825 125442852 -30187268 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 7 1542 355 269 35 9 chr4 125442941 125442956 -30187164 - B1F1 SINE Alu -18 131 13 7 1542 362 270 10 10 chr4 125442956 125443052 -30187068 - ID_B1 SINE B4 -30 194 99 7 1542 1622 261 50 28 chr4 125443052 125443557 -30186563 + RMER20A LTR ERVK 1 516 0 7 1542 248 264 109 36 chr4 125443744 125443854 -30186266 + Charlie4a DNA MER1_type 15 132 -376 7 1542 855 299 160 9 chr4 125443918 125444262 -30185858 + MLT1D LTR MaLR 53 448 -57 7 1542 198 0 0 0 chr4 125444288 125444310 -30185810 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 7 1542 278 328 127 10 chr4 125444331 125444528 -30185592 + Charlie4a DNA MER1_type 197 416 -92 7 1542 644 282 82 28 chr4 125445080 125445237 -30184883 + B3A SINE B2 1 169 -29 7 1542 543 122 0 0 chr4 125445237 125445327 -30184793 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1542 644 282 82 28 chr4 125445327 125445351 -30184769 + B3A SINE B2 170 192 -6 7 1542 360 0 0 0 chr4 125445874 125445914 -30184206 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 7 1542 1682 160 45 160 chr4 125446248 125446716 -30183404 - MTC LTR MaLR -4 417 4 7 1542 423 226 95 9 chr4 125446718 125446834 -30183286 - B4 SINE B4 -22 270 145 7 1542 401 293 33 41 chr4 125446864 125446985 -30183135 + PB1D7 SINE Alu 1 120 0 7 1542 301 285 69 57 chr4 125446989 125447164 -30182956 + L1ME4a LINE L1 2062 2238 -4004 7 1542 234 359 96 103 chr4 125447174 125447435 -30182685 - MER2 DNA MER2_type 0 345 87 7 1542 212 184 0 20 chr4 125447890 125447940 -30182180 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 7 1542 641 327 32 93 chr4 125448080 125448727 -30181393 + L1ME4a LINE L1 5287 5894 -230 7 1542 895 234 39 91 chr4 125449308 125449538 -30180582 + ID_B1 SINE B4 2 219 -5 7 1542 268 140 58 39 chr4 125449493 125449545 -30180575 + PB1D9 SINE Alu 68 120 0 7 1542 1054 125 0 0 chr4 125449546 125449690 -30180430 + B1_Mur1 SINE Alu 1 144 -5 7 1542 7183 134 35 129 chr4 125449699 125451364 -30178756 + ORR1A4-int LTR MaLR 122 1963 0 7 1542 1431 150 90 8 chr4 125451364 125451620 -30178500 + ORR1A4 LTR MaLR 1 277 -52 7 1542 182 222 43 43 chr4 125451860 125451907 -30178213 + MIRm SINE MIR 31 77 -199 7 1542 456 104 0 0 chr4 125452337 125452404 -30177716 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1542 668 333 17 43 chr4 125452409 125452644 -30177476 - B4A SINE B4 0 292 64 7 1542 263 357 14 0 chr4 125452653 125452723 -30177397 - B4A SINE B4 -208 84 14 7 1542 273 150 3 36 chr4 125452726 125452793 -30177327 + B1F SINE Alu 51 148 -1 7 1542 1523 271 102 17 chr4 125452805 125453391 -30176729 + L1MB5 LINE L1 5503 6138 -36 7 1542 331 278 96 22 chr4 125453549 125453751 -30176369 - MTEa LTR MaLR -11 368 135 7 1542 226 339 53 101 chr4 125453761 125453968 -30176152 - MLT2B3 LTR ERVL -342 212 16 7 1542 245 203 15 59 chr4 125455669 125455737 -30174383 + MT2B LTR ERVL 199 263 -338 7 1542 550 155 20 30 chr4 125455677 125455777 -30174343 + B1_Mur1 SINE Alu 50 148 -1 7 1542 324 0 0 0 chr4 125455813 125455849 -30174271 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1542 191 61 30 0 chr4 125455858 125455891 -30174229 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1542 1082 115 0 51 chr4 125455894 125456050 -30174070 - B1_Mur4 SINE Alu -2 148 1 7 1542 385 252 9 26 chr4 125456177 125456291 -30173829 - PB1D10 SINE Alu -2 115 4 7 1542 692 351 65 67 chr4 125457095 125457632 -30172488 + LTR85a LTR Gypsy? 31 566 -136 7 1542 279 173 25 0 chr4 125457746 125457801 -30172319 - MIR SINE MIR -196 80 23 7 1542 249 286 78 12 chr4 125457890 125458015 -30172105 + L2c LINE L2 3204 3353 -34 7 1542 485 216 0 30 chr4 125459105 125459205 -30170915 + PB1D10 SINE Alu 19 115 -2 7 1542 199 311 156 0 chr4 125459375 125459465 -30170655 - L2 LINE L2 -966 2453 2350 7 1542 894 222 90 10 chr4 125459742 125459942 -30170178 + B3 SINE B2 1 216 0 7 1542 854 297 31 22 chr4 125460475 125460699 -30169421 + B4A SINE B4 3 228 -64 7 1542 185 236 176 27 chr4 125460948 125461022 -30169098 - MIRc SINE MIR -116 152 68 7 1542 395 287 51 0 chr4 125461318 125461467 -30168653 - MIRc SINE MIR -82 186 20 7 1542 297 197 0 0 chr4 125461991 125462052 -30168068 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1542 538 262 39 16 chr4 125462323 125462451 -30167669 - B1F1 SINE Alu -2 147 17 7 1542 501 97 0 0 chr4 125463258 125463330 -30166790 + (TCC)n Simple_repeat Simple_repeat 2 73 0 7 1542 6941 41 1 4 chr4 125463773 125464599 -30165521 - L1Md_F2 LINE L1 -13 6569 5746 7 1542 438 20 0 0 chr4 125464671 125464722 -30165398 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1542 472 285 6 11 chr4 125464907 125465088 -30165032 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 7 1542 385 365 79 32 chr4 125465828 125466108 -30164012 + LTR16A LTR ERVL 4 296 -155 7 1542 1211 198 18 0 chr4 125466485 125466707 -30163413 + URR1A DNA MER1_type 1 226 0 7 1542 460 322 35 70 chr4 125467657 125467887 -30162233 - MLT1J LTR MaLR -91 421 200 7 1542 3824 157 129 7 chr4 125467904 125468554 -30161566 + RMER1B Other Other 220 923 -143 7 1542 234 0 0 0 chr4 125468554 125468580 -30161540 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 1542 3824 157 129 7 chr4 125468580 125468680 -30161440 + RMER1B Other Other 924 1061 -5 7 1542 277 262 71 12 chr4 125468691 125468776 -30161344 - MLT1J LTR MaLR -331 181 92 7 1542 2569 121 53 13 chr4 125468791 125468856 -30161264 + MTC LTR MaLR 3 67 -354 8 1542 222 37 0 0 chr4 125468856 125468883 -30161237 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1542 2569 121 53 13 chr4 125468883 125469212 -30160908 + MTC LTR MaLR 68 411 -10 8 1542 217 297 79 0 chr4 125469284 125469385 -30160735 + MIRc SINE MIR 72 180 -88 8 1542 189 0 0 0 chr4 125471257 125471278 -30158842 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1542 322 146 45 0 chr4 125471329 125471418 -30158702 + (CACCAT)n Simple_repeat Simple_repeat 2 94 0 8 1542 189 312 169 28 chr4 125471558 125471700 -30158420 + L2a LINE L2 3265 3426 0 8 1542 2214 91 20 64 chr4 125472604 125472946 -30157174 + ORR1A2 LTR MaLR 1 327 0 8 1542 185 357 14 0 chr4 125474266 125474336 -30155784 + MIR3 SINE MIR 120 190 -18 8 1542 602 234 39 78 chr4 125474658 125474862 -30155258 - B3A SINE B2 0 198 3 8 1542 284 294 40 40 chr4 125474909 125475033 -30155087 + L1M5 LINE L1 5629 5752 -427 8 1542 836 150 7 33 chr4 125475112 125475125 -30154995 - B1_Mur3 SINE Alu -1 148 136 8 1542 267 31 0 0 chr4 125475125 125475157 -30154963 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 8 1542 836 150 7 33 chr4 125475157 125475295 -30154825 - B1_Mur3 SINE Alu -14 135 2 8 1542 438 222 8 16 chr4 125475311 125475439 -30154681 - Lx9 LINE L1 -1 7643 7517 8 1542 366 62 30 30 chr4 125475439 125475506 -30154614 + (CATA)n Simple_repeat Simple_repeat 1 67 0 8 1542 594 168 238 6 chr4 125475507 125475675 -30154445 - Lx9 LINE L1 -188 7456 7250 8 1542 377 138 0 153 chr4 125475669 125475720 -30154400 + Lx9 LINE L1 6919 6962 -682 8 1542 2539 126 32 12 chr4 125475720 125476130 -30153990 + MTC LTR MaLR 3 420 -1 8 1542 377 138 0 153 chr4 125476130 125476189 -30153931 + Lx9 LINE L1 6963 7012 -632 8 1542 310 256 225 0 chr4 125476191 125476351 -30153769 + L1MD2 LINE L1 5770 5965 -394 8 1542 246 143 20 20 chr4 125476955 125477005 -30153115 - L1MA5 LINE L1 -6 6294 6245 8 1542 755 231 170 24 chr4 125477010 125477263 -30152857 + B4A SINE B4 1 290 -2 8 1542 315 282 0 0 chr4 125477267 125477416 -30152704 + (CA)n Simple_repeat Simple_repeat 1 149 0 8 1542 324 305 38 0 chr4 125477469 125477600 -30152520 - L1MA5 LINE L1 -61 6239 6104 8 1542 201 324 62 9 chr4 125477746 125477858 -30152262 - MIR SINE MIR -67 195 78 8 1542 525 105 0 0 chr4 125478698 125478784 -30151336 + (GA)n Simple_repeat Simple_repeat 1 86 0 8 1542 180 0 0 0 chr4 125478809 125478829 -30151291 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1542 414 256 0 0 chr4 125478843 125478929 -30151191 - RSINE1 SINE B4 -77 88 3 8 1542 211 341 85 8 chr4 125478944 125479074 -30151046 - MIR SINE MIR -5 257 118 8 1542 214 268 14 14 chr4 125479277 125479349 -30150771 + GA-rich Low_complexity Low_complexity 2 73 0 8 1542 267 31 0 0 chr4 125479556 125479588 -30150532 + (TGG)n Simple_repeat Simple_repeat 1 32 0 8 1542 265 247 13 64 chr4 125479644 125479722 -30150398 - RSINE1 SINE B4 -32 133 60 8 1542 307 220 178 10 chr4 125479798 125479899 -30150221 - PB1D9 SINE Alu 0 120 3 8 1542 232 229 49 0 chr4 125480257 125480318 -30149802 + C-rich Low_complexity Low_complexity 2 65 0 8 1542 503 60 0 0 chr4 125480521 125480588 -30149532 - B1_Mur3 SINE Alu 0 149 83 8 1542 228 274 46 106 chr4 125480539 125480690 -30149430 - MLT-int LTR MaLR -666 1069 928 8 1542 210 233 0 0 chr4 125480751 125480811 -30149309 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1542 714 302 42 49 chr4 125481193 125481499 -30148621 + ORR1E LTR MaLR 3 306 -53 8 1542 1762 202 63 17 chr4 125481505 125481890 -30148230 + ORR1B1 LTR MaLR 41 394 0 8 1542 1357 302 63 31 chr4 125481980 125482599 -30147521 - L1MB7 LINE L1 -152 6032 5394 8 1542 306 0 0 0 chr4 125482605 125482639 -30147481 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 8 1542 944 35 0 0 chr4 125482694 125482808 -30147312 - B1_Mus1 SINE Alu -33 115 2 8 1542 336 229 6 61 chr4 125482696 125482819 -30147301 - ORR1B1-int LTR MaLR -750 759 640 8 1542 1263 101 21 0 chr4 125482819 125483008 -30147112 - B2_Mm2 SINE B2 -1 194 2 8 1542 336 229 6 61 chr4 125483008 125483047 -30147073 - ORR1B1-int LTR MaLR -870 639 606 8 1542 22 0 0 0 chr4 125483052 125483074 -30147046 + AT_rich Low_complexity Low_complexity 1 22 0 8 1542 2752 222 66 23 chr4 125483078 125483807 -30146313 - RMER1C Other Other -18 1324 565 8 1542 2939 165 25 14 chr4 125484025 125484535 -30145585 - RMER20A LTR ERVK 0 516 1 8 1542 268 271 68 23 chr4 125484553 125484685 -30145435 - L1MB7 LINE L1 -824 5322 5185 8 1542 359 41 0 20 chr4 125484696 125484746 -30145374 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1542 402 194 150 44 chr4 125484752 125484865 -30145255 - B3 SINE B2 -69 147 23 8 1542 920 213 60 10 chr4 125485245 125485444 -30144676 + B3 SINE B2 1 209 -7 8 1542 815 159 30 0 chr4 125485936 125486068 -30144052 + B1_Mur4 SINE Alu 1 136 -14 8 1542 339 25 0 0 chr4 125486070 125486110 -30144010 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 8 1542 513 0 0 0 chr4 125486110 125486166 -30143954 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 8 1542 233 167 19 0 chr4 125487003 125487057 -30143063 + GA-rich Low_complexity Low_complexity 1 55 0 8 1542 283 313 76 25 chr4 125487174 125487292 -30142828 + MIRc SINE MIR 102 225 -43 8 1542 1996 91 61 3 chr4 125488786 125489083 -30141037 - MTC LTR MaLR 0 421 108 8 1542 872 112 37 7 chr4 125489116 125489251 -30140869 + B1_Mur4 SINE Alu 11 149 -1 8 1542 340 158 26 0 chr4 125489251 125489327 -30140793 + GA-rich Low_complexity Low_complexity 2 79 0 8 1542 836 133 0 0 chr4 125489330 125489450 -30140670 - MTC LTR MaLR -301 120 1 8 1542 261 0 0 0 chr4 125489890 125489919 -30140201 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1542 316 323 52 22 chr4 125490841 125490977 -30139143 + LTR79 LTR ERVL 349 488 -39 8 1542 23 0 0 0 chr4 125491186 125491209 -30138911 + AT_rich Low_complexity Low_complexity 1 23 0 8 1542 213 65 0 0 chr4 125491209 125491240 -30138880 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1542 1268 34 0 7 chr4 125491241 125491389 -30138731 - B1_Mus1 SINE Alu -1 147 1 8 1542 231 170 0 0 chr4 125491434 125491481 -30138639 + (CGGGA)n Simple_repeat Simple_repeat 2 48 0 8 1542 360 0 0 0 chr4 125493100 125493140 -30136980 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1542 661 165 95 29 chr4 125493784 125493921 -30136199 + B1_Mur3 SINE Alu 2 147 -2 8 1542 375 78 0 0 chr4 125493930 125493981 -30136139 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1542 274 342 143 20 chr4 125494450 125494653 -30135467 - MIRc SINE MIR -38 230 3 8 1542 227 306 60 40 chr4 125494717 125494867 -30135253 + RLTR18B LTR ERVK 115 267 -245 8 1542 670 123 38 0 chr4 125495810 125495916 -30134204 + PB1D9 SINE Alu 6 115 -5 8 1542 434 267 69 0 chr4 125495928 125496029 -30134091 - PB1D10 SINE Alu -9 108 1 8 1542 239 295 30 50 chr4 125497257 125497357 -30132763 - L2b LINE L2 -254 3121 3024 8 1542 204 61 19 75 chr4 125497406 125497459 -30132661 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 8 1542 336 100 0 20 chr4 125497786 125497837 -30132283 - HAL1-3A_ME LINE L1 -833 2025 1976 8 1542 733 146 20 26 chr4 125497860 125498363 -30131757 + (TG)n Simple_repeat Simple_repeat 1 499 0 8 1542 624 132 22 28 chr4 125498394 125498574 -30131546 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1542 211 215 69 92 chr4 125498629 125498688 -30131432 - RSINE1 SINE B4 0 165 109 8 1542 664 242 208 4 chr4 125498688 125498924 -30131196 - B4A SINE B4 -4 288 5 8 1542 211 215 69 92 chr4 125498924 125498951 -30131169 - RSINE1 SINE B4 -57 108 81 8 1542 374 333 101 22 chr4 125501123 125501350 -30128770 - L2c LINE L2 -47 3340 3096 1 1542 1257 27 0 0 chr4 125503156 125503305 -30126815 + (GA)n Simple_repeat Simple_repeat 1 149 0 2 1542 264 316 88 0 chr4 125503381 125503495 -30126625 - ORR1E LTR MaLR -217 142 19 3 1542 251 284 0 69 chr4 125504275 125504347 -30125773 - B4A SINE B4 -38 254 188 4 1542 378 0 0 0 chr4 125504372 125504414 -30125706 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1542 303 267 123 9 chr4 125504421 125504527 -30125593 - B4A SINE B4 -168 124 7 4 1542 237 302 146 32 chr4 125504691 125504814 -30125306 + MLT1L LTR MaLR 197 333 -277 6 1542 317 320 77 32 chr4 125505694 125505849 -30124271 + MIRb SINE MIR 33 194 -74 7 1542 1106 44 0 0 chr4 125506045 125506180 -30123940 + B1_Mus2 SINE Alu 1 135 -12 8 1542 510 61 0 0 chr4 125506180 125506246 -30123874 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 9 1542 729 247 129 0 chr4 125506270 125506464 -30123656 + ID_B1 SINE B4 5 223 -1 1 1542 409 26 13 26 chr4 125506472 125506550 -30123570 + MusHAL1 LINE L1 2636 2712 0 1 1542 300 339 128 66 chr4 125506668 125507076 -30123044 - MLT1D LTR MaLR -34 433 1 1 1542 379 322 78 62 chr4 125507337 125507661 -30122459 - ORR1E LTR MaLR -14 405 20 1 1542 702 201 171 6 chr4 125507811 125507981 -30122139 - B3A SINE B2 0 198 1 1 1542 2124 246 99 75 chr4 125507981 125508196 -30121924 - Charlie7 DNA MER1_type -83 2529 2347 1 1542 225 0 0 0 chr4 125508196 125508221 -30121899 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1542 2124 244 96 74 chr4 125508221 125508852 -30121268 - Charlie7 DNA MER1_type -266 2346 1716 1 1542 186 43 0 0 chr4 125508852 125508875 -30121245 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1542 2124 244 96 74 chr4 125508875 125508890 -30121230 - Charlie7 DNA MER1_type -897 1715 1701 1 1542 253 206 78 16 chr4 125508892 125508956 -30121164 + L1MD3 LINE L1 7730 7797 -198 1 1542 317 255 41 41 chr4 125508991 125509089 -30121031 - PB1D10 SINE Alu -7 110 13 1 1542 357 274 97 75 chr4 125509153 125509287 -30120833 + RSINE1 SINE B4 11 147 -18 2 1542 866 163 0 13 chr4 125509375 125509524 -30120596 + B1_Mur1 SINE Alu 1 147 -2 2 1542 1611 309 129 35 chr4 125509567 125510432 -30119688 - Charlie7 DNA MER1_type -938 1674 728 1 1542 283 170 0 0 chr4 125510504 125510551 -30119569 - MLT1I LTR MaLR 0 411 365 2 1542 360 290 15 46 chr4 125510793 125510923 -30119197 + RLTR24 LTR ERV1 2 127 -402 2 1542 338 271 67 129 chr4 125511026 125511251 -30118869 + RLTR24 LTR ERV1 318 528 -1 2 1542 1062 287 66 9 chr4 125511366 125511714 -30118406 - MTEb LTR MaLR -11 368 1 2 1542 556 208 278 29 chr4 125512019 125512192 -30117928 - B3 SINE B2 0 216 1 2 1542 506 30 30 0 chr4 125513085 125513152 -30116968 + (CATA)n Simple_repeat Simple_repeat 4 72 0 2 1542 729 307 17 37 chr4 125513179 125513477 -30116643 + B4A SINE B4 1 292 0 2 1542 689 176 23 0 chr4 125513477 125513653 -30116467 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1542 194 179 18 0 chr4 125513666 125513722 -30116398 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1542 618 89 0 0 chr4 125513787 125513877 -30116243 + (GGGA)n Simple_repeat Simple_repeat 1 90 0 2 1542 312 246 25 0 chr4 125514204 125514283 -30115837 + MLT1D LTR MaLR 40 122 -505 3 1542 385 287 28 0 chr4 125514293 125514401 -30115719 + PB1D10 SINE Alu 7 117 0 3 1542 940 284 35 16 chr4 125514523 125514777 -30115343 + MLT1D LTR MaLR 244 502 -3 3 1542 370 248 79 0 chr4 125515076 125515177 -30114943 - PB1D10 SINE Alu -6 111 3 3 1542 459 0 0 0 chr4 125515544 125515595 -30114525 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 1542 1148 92 0 0 chr4 125515595 125515753 -30114367 - B2_Mm2 SINE B2 -32 163 6 3 1542 477 328 112 16 chr4 125516461 125516610 -30113510 + MLT1H LTR MaLR 56 214 -335 3 1542 480 48 0 0 chr4 125516610 125516673 -30113447 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1542 477 311 75 14 chr4 125516673 125516941 -30113179 + MLT1H LTR MaLR 215 546 -3 3 1542 794 116 27 31 chr4 125517218 125517477 -30112643 + GA-rich Low_complexity Low_complexity 1 257 0 3 1542 211 318 12 12 chr4 125518444 125518530 -30111590 + B4 SINE B4 1 86 -206 3 1542 380 308 42 7 chr4 125518641 125518804 -30111316 - MIRb SINE MIR -48 220 41 3 1542 297 336 0 9 chr4 125519872 125519977 -30110143 - MER117 DNA MER1_type -5 192 89 4 1542 362 331 40 0 chr4 125520019 125520143 -30109977 - MIR3 SINE MIR -50 158 30 4 1542 432 37 0 0 chr4 125521218 125521272 -30108848 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1542 333 0 0 0 chr4 125521272 125521308 -30108812 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1542 1047 138 3 0 chr4 125522070 125522429 -30107691 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 4 1542 202 320 17 4 chr4 125522692 125522782 -30107338 - MIRm SINE MIR -73 189 97 4 1542 2197 124 103 0 chr4 125523781 125524161 -30105959 - MTC LTR MaLR -2 419 1 4 1542 1829 212 30 23 chr4 125524335 125524731 -30105389 + MTC LTR MaLR 23 421 0 4 1542 657 225 8 0 chr4 125524745 125524874 -30105246 - RSINE1 SINE B4 -34 131 2 4 1542 271 267 26 13 chr4 125524892 125524968 -30105152 - MLT1J2 LTR MaLR -365 83 7 4 1542 949 209 74 5 chr4 125526049 125526251 -30103869 - B3 SINE B2 0 216 1 5 1542 365 244 47 0 chr4 125526460 125526546 -30103574 + MER45A DNA Tip100 78 167 -11 5 1542 405 0 0 0 chr4 125527554 125527599 -30102521 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1542 225 0 0 0 chr4 125527599 125527623 -30102497 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1542 234 0 0 0 chr4 125527623 125527648 -30102472 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1542 1180 254 96 42 chr4 125528546 125528973 -30101147 - RMER4A LTR ERVK 0 466 17 5 1542 219 36 0 0 chr4 125530858 125530886 -30099234 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 5 1542 214 189 0 0 chr4 125530891 125530928 -30099192 + CT-rich Low_complexity Low_complexity 4 40 0 5 1542 304 267 55 26 chr4 125531000 125531195 -30098925 + Lx4A LINE L1 5692 5928 -1130 5 1542 264 356 41 41 chr4 125531891 125532014 -30098106 + MIRb SINE MIR 77 199 -69 5 1542 218 318 0 0 chr4 125532401 125532467 -30097653 - PB1D10 SINE Alu -50 67 2 6 1542 324 0 0 0 chr4 125532681 125532717 -30097403 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1542 238 236 0 0 chr4 125532727 125532782 -30097338 + MLT1C LTR MaLR 34 88 -379 6 1542 932 263 5 5 chr4 125532828 125533042 -30097078 - B3 SINE B2 -2 214 1 6 1542 497 231 25 8 chr4 125533055 125533173 -30096947 - B1F SINE Alu -9 140 21 6 1542 518 251 40 80 chr4 125533551 125533750 -30096370 - LTR33 LTR ERVL 0 515 325 6 1542 522 261 34 62 chr4 125533791 125533999 -30096121 - LTR33 LTR ERVL -296 219 18 6 1542 569 191 41 28 chr4 125535006 125535151 -30094969 + B1F SINE Alu 1 147 -2 6 1542 254 284 0 0 chr4 125535158 125535225 -30094895 + ID4_ SINE ID 1 67 -16 6 1542 214 266 31 110 chr4 125535294 125535421 -30094699 - MIRc SINE MIR -120 148 32 6 1542 268 333 29 0 chr4 125535978 125536083 -30094037 + MER81 DNA AcHobo 1 108 -6 6 1542 592 290 6 17 chr4 125536304 125536476 -30093644 - B3 SINE B2 0 216 47 7 1542 328 270 77 22 chr4 125537181 125537272 -30092848 + L1MEg LINE L1 1882 1977 -4107 7 1542 275 346 33 38 chr4 125537823 125538036 -30092084 + L2 LINE L2 2300 2511 -908 7 1542 655 225 7 0 chr4 125538346 125538488 -30091632 - B1F SINE Alu -6 143 1 7 1542 308 327 37 12 chr4 125539039 125539203 -30090917 - MLT1H LTR MaLR -330 219 52 7 1542 1760 110 158 0 chr4 125539639 125539949 -30090171 + ORR1B2 LTR MaLR 1 359 -8 7 1542 2799 145 7 75 chr4 125539953 125540513 -30089607 + ORR1B2-int LTR MaLR 1 522 -987 7 1542 3042 138 29 13 chr4 125540538 125540878 -30089242 + ORR1B2-int LTR MaLR 980 1326 -183 7 1542 2760 12 0 0 chr4 125540878 125541200 -30088920 - RLTRETN_Mm LTR ERVK 0 322 1 7 1542 3042 138 29 13 chr4 125541200 125541381 -30088739 + ORR1B2-int LTR MaLR 1327 1509 0 7 1542 498 174 82 61 chr4 125541381 125541528 -30088592 + ORR1B2 LTR MaLR 1 150 -217 7 1542 614 332 76 55 chr4 125541492 125541913 -30088207 - MLT1D LTR MaLR -75 430 1 7 1542 318 312 97 11 chr4 125542744 125542919 -30087201 - MIRb SINE MIR -19 249 60 7 1542 619 265 111 19 chr4 125543167 125543375 -30086745 - Tigger5 DNA MER2_type -2170 236 10 7 1542 944 244 110 4 chr4 125543637 125543909 -30086211 - RMER15 LTR ERVL 0 575 275 8 1542 292 206 38 198 chr4 125543907 125544064 -30086056 - RMER15 LTR ERVL -415 160 29 8 1542 2223 157 45 5 chr4 125544348 125544745 -30085375 - MTC LTR MaLR -8 413 1 8 1542 395 217 100 36 chr4 125544838 125544948 -30085172 - PB1D10 SINE Alu 0 117 1 8 1542 1017 209 0 68 chr4 125544981 125545028 -30085092 - B3 SINE B2 -10 206 160 8 1542 2387 138 58 5 chr4 125545028 125545428 -30084692 + MTC LTR MaLR 1 421 0 8 1542 1017 209 0 68 chr4 125545428 125545601 -30084519 - B3 SINE B2 -57 159 1 8 1542 283 314 23 0 chr4 125545880 125545966 -30084154 + MIRb SINE MIR 40 127 -141 8 1542 342 387 49 5 chr4 125546315 125546538 -30083582 - MIR SINE MIR -2 260 28 8 1542 345 266 32 91 chr4 125546548 125546734 -30083386 - MIRc SINE MIR -36 232 58 8 1542 708 347 100 39 chr4 125546899 125547310 -30082810 + MER21B LTR ERV1 12 447 -416 8 1542 184 140 60 0 chr4 125547326 125547376 -30082744 + CT-rich Low_complexity Low_complexity 1 53 0 8 1542 1517 158 20 17 chr4 125547466 125547762 -30082358 - RMER4A LTR ERVK 0 466 170 9 1542 389 375 104 12 chr4 125547784 125548035 -30082085 + MER21B LTR ERV1 467 740 -123 8 1542 532 221 113 13 chr4 125548855 125549006 -30081114 - MLT1B LTR MaLR -6 384 219 9 1542 294 232 15 5 chr4 125549037 125549234 -30080886 + CT-rich Low_complexity Low_complexity 1 199 0 9 1542 771 203 0 0 chr4 125549370 125549508 -30080612 + B1_Mur2 SINE Alu 11 148 -1 9 1542 283 214 94 75 chr4 125549527 125549633 -30080487 - MLT1B LTR MaLR -279 111 4 9 1542 397 268 9 9 chr4 125549891 125550004 -30080116 - PB1D10 SINE Alu 0 117 5 9 1542 231 313 72 28 chr4 125550185 125550344 -30079776 + MIRb SINE MIR 81 239 -23 9 1542 468 298 0 8 chr4 125550576 125550701 -30079419 + PB1 SINE Alu 1 124 -3 9 1542 913 304 82 13 chr4 125551130 125551446 -30078674 - MER2 DNA MER2_type -2 343 6 9 1542 225 270 105 26 chr4 125551552 125551628 -30078492 - L3 LINE CR1 -442 4047 3966 9 1542 1491 110 20 8 chr4 125554814 125555061 -30075059 - RLTR11A2 LTR ERVK -2 525 276 9 1542 3014 82 0 0 chr4 125555511 125555911 -30074209 + MTB LTR MaLR 1 400 0 1 1542 314 289 11 0 chr4 125558272 125558362 -30071758 + L2a LINE L2 3336 3426 0 1 1542 628 268 106 0 chr4 125558405 125558584 -30071536 - B3 SINE B2 0 216 19 1 1542 342 0 0 0 chr4 125558942 125558980 -30071140 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1542 288 77 0 0 chr4 125560299 125560338 -30069782 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1542 210 37 0 0 chr4 125560338 125560365 -30069755 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1542 839 231 71 5 chr4 125560502 125560698 -30069422 + ID_B1 SINE B4 2 210 -14 1 1542 551 117 11 0 chr4 125560698 125560792 -30069328 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 1 1542 1075 149 0 53 chr4 125560882 125560928 -30069192 - B2_Mm2 SINE B2 0 195 160 1 1542 315 0 0 0 chr4 125560928 125560963 -30069157 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1542 1075 149 0 53 chr4 125560963 125561122 -30068998 - B2_Mm2 SINE B2 -36 159 1 1 1542 539 339 48 26 chr4 125561337 125561456 -30068664 + MER47B DNA MER2_type 14 138 -280 1 1542 1484 75 16 0 chr4 125561456 125561643 -30068477 - B2_Mm2 SINE B2 -5 190 1 1 1542 539 309 393 37 chr4 125561643 125561851 -30068269 + MER47B DNA MER2_type 139 418 0 1 1542 295 306 107 0 chr4 125562099 125562220 -30067900 - ORR1E LTR MaLR -223 136 3 1 1542 364 314 18 22 chr4 125562225 125562453 -30067667 + L1M5 LINE L1 4195 4421 -1725 1 1542 288 0 0 0 chr4 125562462 125562494 -30067626 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1542 360 0 0 0 chr4 125562927 125562967 -30067153 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1542 318 183 0 0 chr4 125562967 125563038 -30067082 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1542 297 317 40 0 chr4 125563158 125563259 -30066861 + L1MA9 LINE L1 5484 5588 -724 1 1542 2932 173 99 67 chr4 125563259 125564056 -30066064 + RMER19B LTR ERVK 1 684 -218 1 1542 1228 41 7 0 chr4 125564056 125564202 -30065918 + B1_Mus2 SINE Alu 1 147 0 1 1542 1316 79 45 0 chr4 125564247 125564425 -30065695 + B2_Mm1t SINE B2 2 187 -6 1 1542 603 268 123 14 chr4 125564432 125564644 -30065476 + L1MA9 LINE L1 5579 5813 -478 1 1542 955 272 43 25 chr4 125564678 125564957 -30065163 - B4 SINE B4 0 292 9 1 1542 3940 229 29 25 chr4 125564984 125565952 -30064168 - RCHARR1 DNA MER1_type 0 974 3 1 1542 916 230 94 15 chr4 125565966 125566231 -30063889 + L1MA9 LINE L1 5823 6108 -204 1 1542 588 280 46 120 chr4 125566553 125566942 -30063178 - ORR1E LTR MaLR -1 378 3 1 1543 407 312 60 108 chr4 125567104 125567355 -30062765 - ORR1E LTR MaLR -120 239 1 1 1543 414 244 84 0 chr4 125567361 125567480 -30062640 + L1MA9 LINE L1 6179 6307 -5 1 1543 740 290 24 9 chr4 125567801 125568013 -30062107 + B3 SINE B2 2 216 0 1 1543 389 273 53 26 chr4 125568082 125568195 -30061925 + PB1D10 SINE Alu 2 117 0 1 1543 859 215 56 45 chr4 125568504 125568727 -30061393 + L1MB7 LINE L1 5661 5886 -298 1 1543 980 91 144 46 chr4 125568727 125568900 -30061220 + B2_Mm2 SINE B2 5 194 -1 1 1543 859 264 95 42 chr4 125568900 125569086 -30061034 + L1MB7 LINE L1 5887 6097 -82 1 1543 24 0 0 0 chr4 125569086 125569110 -30061010 + AT_rich Low_complexity Low_complexity 1 24 0 1 1543 477 0 0 0 chr4 125569117 125569170 -30060950 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1543 315 65 0 0 chr4 125569197 125569243 -30060877 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1543 821 69 198 0 chr4 125569243 125569359 -30060761 - B1_Mus2 SINE Alu -7 140 2 1 1543 342 0 0 0 chr4 125569360 125569398 -30060722 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1543 247 122 0 0 chr4 125569412 125569453 -30060667 + L1MB7 LINE L1 6122 6162 -22 1 1543 1595 108 9 22 chr4 125569490 125569718 -30060402 - URR1B DNA MER1_type 0 225 1 1 1543 230 323 61 20 chr4 125570417 125570515 -30059605 - ORR1E LTR MaLR -29 350 249 1 1543 359 284 79 0 chr4 125570587 125570714 -30059406 - ORR1E LTR MaLR -222 137 1 1 1543 266 302 0 23 chr4 125570715 125570803 -30059317 - MLT1H2 LTR MaLR -341 148 63 1 1543 182 270 0 0 chr4 125571172 125571222 -30058898 - MIRm SINE MIR -105 157 108 1 1543 296 44 44 0 chr4 125573355 125573400 -30056720 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 1 1543 228 35 0 0 chr4 125573591 125573620 -30056500 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 1543 537 199 0 0 chr4 125573639 125573800 -30056320 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1543 323 176 11 0 chr4 125573814 125573905 -30056215 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1543 297 0 0 0 chr4 125573948 125573981 -30056139 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1543 470 291 34 39 chr4 125573989 125574168 -30055952 - B4A SINE B4 -114 178 1 1 1543 245 360 36 42 chr4 125574204 125574372 -30055748 + MIRb SINE MIR 94 260 -8 1 1543 283 271 21 0 chr4 125574722 125574818 -30055302 + C-rich Low_complexity Low_complexity 4 101 0 1 1543 347 315 99 38 chr4 125575398 125575609 -30054511 - MIRb SINE MIR -43 225 2 1 1543 627 213 24 8 chr4 125576672 125576795 -30053325 + B3A SINE B2 5 129 -69 1 1543 724 253 63 26 chr4 125577092 125577283 -30052837 + B4 SINE B4 3 200 -92 1 1543 273 309 0 0 chr4 125577312 125577396 -30052724 + (CATA)n Simple_repeat Simple_repeat 1 84 0 1 1543 211 335 118 43 chr4 125578034 125578221 -30051899 - MIRb SINE MIR -67 201 1 1 1543 773 253 92 4 chr4 125579060 125579310 -30050810 - L1MB3 LINE L1 -1 6182 5911 1 1543 611 156 0 8 chr4 125579340 125579463 -30050657 + CT-rich Low_complexity Low_complexity 2 123 0 1 1543 255 374 70 0 chr4 125579599 125579714 -30050406 - B4A SINE B4 -141 151 29 1 1543 781 179 30 26 chr4 125579744 125579936 -30050184 - B3 SINE B2 0 195 2 1 1543 540 292 102 8 chr4 125579938 125580152 -30049968 - L1MB3 LINE L1 -290 5893 5629 1 1543 333 0 0 0 chr4 125580240 125580277 -30049843 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1543 578 204 15 0 chr4 125581408 125581545 -30048575 + (CATA)n Simple_repeat Simple_repeat 2 140 0 1 1543 225 0 0 0 chr4 125582285 125582310 -30047810 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1543 387 41 0 0 chr4 125582310 125582358 -30047762 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1543 279 79 0 0 chr4 125582393 125582431 -30047689 + (GTGTG)n Simple_repeat Simple_repeat 3 40 0 1 1543 376 247 21 11 chr4 125582603 125582697 -30047423 - MLT1H1 LTR MaLR 0 555 461 1 1543 603 260 65 91 chr4 125582709 125582895 -30047225 + B3A SINE B2 1 181 -14 1 1543 648 38 0 0 chr4 125582908 125582987 -30047133 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 1 1543 247 342 221 11 chr4 125582990 125583262 -30046858 - MLT1H1 LTR MaLR -95 460 132 1 1543 222 196 0 0 chr4 125583450 125583496 -30046624 + MIRc SINE MIR 110 155 -113 1 1543 211 315 9 9 chr4 125584971 125585083 -30045037 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1543 1156 66 0 62 chr4 125586734 125586912 -30043208 - B2_Mm2 SINE B2 -27 168 2 1 1543 398 331 45 0 chr4 125586912 125587043 -30043077 - B1F2 SINE Alu -12 137 1 1 1543 351 323 10 0 chr4 125587151 125587270 -30042850 - MIRb SINE MIR -2 266 143 1 1543 197 204 0 39 chr4 125587302 125587353 -30042767 - L2 LINE L2 -2913 506 458 1 1543 186 133 0 0 chr4 125587507 125587537 -30042583 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1543 911 247 128 66 chr4 125587541 125587814 -30042306 + B4 SINE B4 2 291 -1 1 1543 602 200 0 49 chr4 125587844 125588128 -30041992 + (CATA)n Simple_repeat Simple_repeat 1 269 0 1 1543 912 42 0 0 chr4 125588186 125588304 -30041816 + B1_Mus1 SINE Alu 30 147 -1 1 1543 221 218 143 16 chr4 125589417 125589480 -30040640 + MIR SINE MIR 48 116 -160 1 1543 311 211 0 0 chr4 125589539 125589596 -30040524 + B3A SINE B2 33 89 -109 1 1543 216 158 0 0 chr4 125589613 125589651 -30040469 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1543 233 350 14 7 chr4 125590493 125590631 -30039489 + (TATG)n Simple_repeat Simple_repeat 1 139 0 1 1543 350 269 40 48 chr4 125590891 125591016 -30039104 - MLT1E1A LTR MaLR -410 270 147 1 1543 415 250 21 70 chr4 125591019 125591161 -30038959 + B1F SINE Alu 13 147 -2 1 1543 504 0 0 0 chr4 125591206 125591262 -30038858 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1543 293 199 102 6 chr4 125591654 125591811 -30038309 + RMER17D2 LTR ERVK 248 419 -390 1 1543 360 200 17 17 chr4 125593082 125593260 -30036860 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1543 189 74 0 0 chr4 125593359 125593386 -30036734 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1543 750 227 26 13 chr4 125593387 125593543 -30036577 - RSINE1 SINE B4 -6 159 2 1 1543 214 179 0 0 chr4 125593961 125594000 -30036120 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 1 1543 243 146 0 0 chr4 125595356 125595397 -30034723 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1543 992 255 30 55 chr4 125596155 125596453 -30033667 + B4 SINE B4 18 292 0 1 1543 234 0 0 0 chr4 125596927 125596953 -30033167 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1543 651 281 154 60 chr4 125596984 125597377 -30032743 - MLT1E3 LTR MaLR -12 612 183 1 1543 271 286 0 0 chr4 125598512 125598575 -30031545 - MER63D DNA AcHobo -684 377 315 1 1543 277 119 0 0 chr4 125598577 125598619 -30031501 + ID4 SINE ID 4 45 -38 1 1543 380 294 9 18 chr4 125599098 125599209 -30030911 - ORR1E LTR MaLR -240 119 10 1 1543 321 308 41 8 chr4 125600056 125600177 -30029943 + MIR SINE MIR 27 151 -57 1 1543 399 89 0 0 chr4 125600473 125600529 -30029591 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1 1543 25 31 0 0 chr4 125601186 125601218 -30028902 + AT_rich Low_complexity Low_complexity 1 32 0 1 1543 1295 34 0 0 chr4 125601218 125601365 -30028755 + B1_Mus1 SINE Alu 1 147 -1 1 1543 228 35 0 0 chr4 125601367 125601396 -30028724 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1543 1626 146 231 0 chr4 125601624 125601919 -30028201 - ORR1B2 LTR MaLR 0 367 5 1 1543 265 349 28 34 chr4 125602733 125602911 -30027209 - MIRb SINE MIR -1 261 84 1 1543 269 351 128 20 chr4 125603033 125603228 -30026892 - MIRb SINE MIR -10 258 43 1 1543 333 0 0 0 chr4 125603852 125603889 -30026231 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1 1543 462 179 39 78 chr4 125603889 125603992 -30026128 - B1_Mus2 SINE Alu 0 147 49 2 1543 276 308 108 31 chr4 125605176 125605371 -30024749 + MIR SINE MIR 1 203 -59 2 1543 189 320 59 10 chr4 125607202 125607303 -30022817 - L2b LINE L2 -257 3118 3013 2 1543 225 256 125 23 chr4 125607821 125607909 -30022211 - PB1D10 SINE Alu -20 97 1 2 1543 311 308 82 16 chr4 125607920 125608042 -30022078 + L2a LINE L2 3283 3412 -14 2 1543 239 218 17 34 chr4 125608184 125608243 -30021877 + L2c LINE L2 3284 3364 -23 2 1543 252 245 21 17 chr4 125608302 125608544 -30021576 + (CAGAGA)n Simple_repeat Simple_repeat 1 243 0 2 1543 217 380 0 42 chr4 125608730 125608848 -30021272 + MIRb SINE MIR 16 128 -140 2 1543 472 275 28 16 chr4 125608990 125609168 -30020952 - MIR SINE MIR -77 191 13 2 1543 185 368 111 8 chr4 125609201 125609327 -30020793 + MIR SINE MIR 116 254 -8 2 1543 256 320 139 0 chr4 125609925 125610047 -30020073 + MIRc SINE MIR 24 162 -106 2 1543 1890 161 62 38 chr4 125610255 125610361 -30019759 + MTC LTR MaLR 1 108 -313 2 1543 895 133 166 55 chr4 125610361 125610560 -30019560 + URR1B DNA MER1_type 5 225 0 2 1543 1890 161 62 38 chr4 125610560 125610822 -30019298 + MTC LTR MaLR 109 378 -43 2 1543 1054 221 0 33 chr4 125611323 125611538 -30018582 + B3 SINE B2 6 213 -3 2 1543 227 344 0 0 chr4 125611726 125611787 -30018333 + RCHARR1 DNA MER1_type 6 66 -908 2 1543 953 127 6 0 chr4 125611792 125611949 -30018171 + (GAA)n Simple_repeat Simple_repeat 2 159 0 2 1543 415 118 13 13 chr4 125611951 125612028 -30018092 + (GGA)n Simple_repeat Simple_repeat 1 77 0 2 1543 2814 229 34 25 chr4 125612028 125612279 -30017841 + RCHARR1 DNA MER1_type 65 317 -657 2 1543 2401 118 54 22 chr4 125612279 125612687 -30017433 + MTC LTR MaLR 1 421 0 2 1543 2814 229 34 25 chr4 125612687 125613111 -30017009 + RCHARR1 DNA MER1_type 318 746 -228 2 1543 608 212 36 7 chr4 125613103 125613241 -30016879 - ID_B1 SINE B4 -1 223 82 2 1543 361 311 87 29 chr4 125613274 125613446 -30016674 + ID_B1 SINE B4 1 182 -42 2 1543 229 143 89 0 chr4 125614312 125614368 -30015752 + MLT1J LTR MaLR 104 164 -348 2 1543 341 263 0 13 chr4 125614763 125614840 -30015280 + B3A SINE B2 52 127 -71 2 1543 2675 129 65 34 chr4 125615016 125615523 -30014597 - RLTR28 LTR ERVL -1 523 1 2 1543 742 279 88 0 chr4 125616223 125616474 -30013646 + B4A SINE B4 1 273 -19 2 1543 548 202 115 8 chr4 125616541 125616671 -30013449 + ID_B1 SINE B4 81 224 0 2 1543 1269 288 79 42 chr4 125616686 125617229 -30012891 - Tigger13a DNA MER2_type -71 700 138 2 1543 266 0 0 29 chr4 125617465 125617500 -30012620 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 2 1543 259 275 87 52 chr4 125618149 125618264 -30011856 + MER53 DNA hAT 54 172 -21 2 1543 267 253 94 10 chr4 125618372 125618468 -30011652 + MIRb SINE MIR 35 138 -130 2 1543 372 94 0 0 chr4 125618546 125618599 -30011521 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 1543 813 226 58 10 chr4 125619736 125619942 -30010178 - ID_B1 SINE B4 -3 221 6 2 1543 189 289 0 0 chr4 125620438 125620490 -30009630 + L2b LINE L2 3322 3373 -2 2 1543 195 222 0 0 chr4 125621253 125621298 -30008822 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1543 207 0 0 0 chr4 125621374 125621397 -30008723 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2 1543 970 146 136 0 chr4 125621436 125621635 -30008485 - URR1A DNA MER1_type 0 226 1 2 1543 283 310 6 6 chr4 125623322 125623494 -30006626 + (AGCTG)n Simple_repeat Simple_repeat 4 175 0 2 1543 250 337 0 0 chr4 125623462 125623640 -30006480 + (AGGTG)n Simple_repeat Simple_repeat 3 180 0 2 1543 486 0 0 0 chr4 125623949 125624003 -30006117 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1543 493 316 20 26 chr4 125624033 125624228 -30005892 + MIR SINE MIR 1 194 -68 2 1543 924 146 0 7 chr4 125624235 125624380 -30005740 - B1_Mur4 SINE Alu -1 149 6 2 1543 1124 202 10 0 chr4 125624391 125624599 -30005521 - B3 SINE B2 -6 210 1 2 1543 465 19 0 0 chr4 125624765 125624819 -30005301 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 2 1543 2066 185 35 5 chr4 125624821 125625222 -30004898 + MTD LTR MaLR 6 417 -2 2 1543 285 146 0 0 chr4 125625475 125625523 -30004597 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1543 360 210 85 57 chr4 125625766 125625872 -30004248 - MTEa LTR MaLR -270 109 1 2 1543 369 0 0 0 chr4 125626219 125626260 -30003860 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1543 252 0 0 0 chr4 125626260 125626287 -30003833 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1543 210 366 20 0 chr4 125627500 125627601 -30002519 + L3b LINE CR1 194 296 -186 2 1543 347 204 0 21 chr4 125627932 125628027 -30002093 + (CGTG)n Simple_repeat Simple_repeat 1 93 0 2 1543 551 296 36 30 chr4 125628078 125628245 -30001875 - B3A SINE B2 -16 182 15 2 1543 1208 41 0 0 chr4 125628463 125628610 -30001510 + B1_Mus2 SINE Alu 1 147 0 2 1543 216 0 0 0 chr4 125628610 125628634 -30001486 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1543 896 131 23 0 chr4 125629143 125629318 -30000802 + GA-rich Low_complexity Low_complexity 2 180 0 2 1543 194 0 0 37 chr4 125629450 125629477 -30000643 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1543 1062 45 15 0 chr4 125629477 125629611 -30000509 - B1_Mus2 SINE Alu -10 137 2 2 1543 333 0 0 0 chr4 125629631 125629668 -30000452 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2 1543 1169 54 0 0 chr4 125629830 125629977 -30000143 + B1_Mm SINE Alu 1 147 0 2 1543 380 257 9 18 chr4 125630328 125630439 -29999681 + PB1D10 SINE Alu 7 116 -1 2 1543 444 324 62 51 chr4 125631174 125631450 -29998670 + B4 SINE B4 3 281 -11 2 1543 294 295 0 49 chr4 125631516 125631538 -29998582 + B4 SINE B4 68 85 -207 2 1543 363 281 39 10 chr4 125631538 125631642 -29998478 + PB1D10 SINE Alu 1 107 -10 2 1543 819 43 8 17 chr4 125631653 125631771 -29998349 + (GGGAGA)n Simple_repeat Simple_repeat 5 121 0 2 1543 1138 68 0 0 chr4 125631824 125631971 -29998149 - B1_Mus1 SINE Alu 0 148 2 2 1543 661 254 125 121 chr4 125631971 125632410 -29997710 + RMER4A LTR ERVK 17 457 -9 2 1543 1146 103 0 0 chr4 125632426 125632660 -29997460 + (TG)n Simple_repeat Simple_repeat 1 234 0 2 1543 228 256 96 43 chr4 125632795 125632889 -29997231 - MER5A1 DNA MER1_type 0 166 68 2 1543 378 325 67 26 chr4 125632932 125633125 -29996995 - MIR SINE MIR -61 201 1 2 1543 314 329 2 0 chr4 125633505 125633603 -29996517 + B1F1 SINE Alu 2 100 -20 2 1543 2062 92 18 37 chr4 125633604 125633930 -29996190 + ORR1A4 LTR MaLR 2 321 -8 2 1543 31 0 0 0 chr4 125633933 125633964 -29996156 + AT_rich Low_complexity Low_complexity 1 31 0 2 1543 593 271 1 7 chr4 125633964 125634103 -29996017 + ID_B1 SINE B4 78 212 -12 2 1543 285 89 0 0 chr4 125634106 125634151 -29995969 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1543 232 244 0 0 chr4 125634930 125634975 -29995145 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1543 829 237 143 8 chr4 125635062 125635313 -29994807 + B4A SINE B4 2 286 -6 2 1543 188 316 13 13 chr4 125636091 125636168 -29993952 - MIRm SINE MIR -116 160 84 2 1543 195 346 115 22 chr4 125636270 125636453 -29993667 + MIR SINE MIR 61 260 -2 2 1543 205 161 0 0 chr4 125636885 125636916 -29993204 + polypurine Low_complexity Low_complexity 1 31 0 2 1543 26 0 0 0 chr4 125637050 125637076 -29993044 + GC_rich Low_complexity Low_complexity 1 26 0 2 1543 300 336 28 43 chr4 125637457 125637665 -29992455 - MLT1A0 LTR MaLR -15 350 190 2 1543 635 0 13 0 chr4 125638689 125638764 -29991356 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1543 697 278 35 15 chr4 125638776 125638977 -29991143 - B4A SINE B4 -87 205 1 2 1543 206 81 54 0 chr4 125639100 125639137 -29990983 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2 1543 822 195 43 69 chr4 125639381 125639612 -29990508 - URR1A DNA MER1_type 0 226 2 2 1543 189 345 106 26 chr4 125640388 125640501 -29989619 - L2a LINE L2 -20 3406 3285 2 1543 360 321 70 23 chr4 125640515 125640687 -29989433 + ORR1E LTR MaLR 23 202 -157 2 1543 387 318 124 18 chr4 125640687 125640969 -29989151 + L1MEc LINE L1 399 710 -5690 2 1543 259 233 32 40 chr4 125640959 125641084 -29989036 + L1MEc LINE L1 2263 2386 -4029 2 1543 633 313 14 5 chr4 125641096 125641308 -29988812 + B3 SINE B2 3 216 0 2 1543 669 210 36 0 chr4 125641364 125641502 -29988618 + B1_Mur3 SINE Alu 1 143 -6 2 1543 636 179 82 7 chr4 125641553 125641688 -29988432 + B1_Mur1 SINE Alu 5 149 0 2 1543 294 236 42 0 chr4 125641760 125641832 -29988288 + PB1D10 SINE Alu 37 111 -6 2 1543 899 288 61 31 chr4 125641840 125642231 -29987889 + L1MEc LINE L1 2483 2885 -3434 2 1543 975 262 5 5 chr4 125642242 125642453 -29987667 + B4A SINE B4 2 212 -80 2 1543 549 254 99 67 chr4 125642458 125642711 -29987409 + B4 SINE B4 7 267 -25 2 1543 279 154 0 0 chr4 125642749 125642814 -29987306 + GA-rich Low_complexity Low_complexity 2 66 0 2 1543 443 246 34 8 chr4 125642892 125643011 -29987109 + B3A SINE B2 1 122 -76 2 1543 1807 228 89 2 chr4 125643011 125643482 -29986638 + MT2A LTR ERVL 1 512 -21 2 1543 1207 172 9 5 chr4 125643717 125643927 -29986193 - B3 SINE B2 -5 211 1 2 1543 856 108 71 7 chr4 125643935 125644075 -29986045 - B1_Mur3 SINE Alu 0 149 1 2 1543 288 0 0 0 chr4 125644089 125644121 -29985999 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1543 1174 48 0 0 chr4 125644125 125644272 -29985848 - B1_Mus1 SINE Alu 0 148 2 2 1543 1003 224 108 65 chr4 125644272 125644597 -29985523 - ORR1C2 LTR MaLR -44 340 2 2 1543 333 143 0 31 chr4 125644597 125644658 -29985462 - RSINE1 SINE B4 -28 137 79 2 1543 550 258 11 94 chr4 125644754 125644934 -29985186 + B3A SINE B2 33 197 -1 3 1543 308 239 38 23 chr4 125644945 125645059 -29985061 - RSINE1 SINE B4 -169 123 3 3 1543 307 252 20 29 chr4 125645085 125645187 -29984933 + L1MEc LINE L1 3640 3740 -2579 2 1543 1198 322 95 54 chr4 125645189 125645294 -29984826 + MER21B LTR ERV1 1 102 -761 3 1543 608 281 119 61 chr4 125645294 125645639 -29984481 - MLT1A0 LTR MaLR 0 365 1 3 1543 1198 322 95 54 chr4 125645639 125646121 -29983999 + MER21B LTR ERV1 103 612 -251 3 1543 708 266 17 17 chr4 125646557 125646733 -29983387 - ID_B1 SINE B4 -48 176 1 3 1543 204 348 170 0 chr4 125646746 125646858 -29983262 + MIRb SINE MIR 114 244 -24 3 1543 283 277 24 0 chr4 125647402 125647485 -29982635 + L2b LINE L2 3291 3375 0 3 1543 318 196 86 86 chr4 125647675 125647792 -29982328 - L1ME4a LINE L1 -14 6110 5994 3 1543 888 274 73 23 chr4 125647881 125648184 -29981936 - L1ME4a LINE L1 -266 5858 5541 3 1543 414 271 22 26 chr4 125648247 125648404 -29981716 - MLT1I LTR MaLR -3 445 288 3 1543 396 0 0 0 chr4 125648531 125648575 -29981545 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1543 192 40 0 0 chr4 125648609 125648634 -29981486 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 1543 487 170 217 0 chr4 125648634 125648740 -29981380 - B1_Mur1 SINE Alu -13 136 8 3 1543 840 317 0 13 chr4 125648746 125648976 -29981144 - B4A SINE B4 -64 228 2 3 1543 469 289 0 0 chr4 125649572 125649686 -29980434 + B4A SINE B4 6 119 -173 3 1543 734 229 103 13 chr4 125650731 125651045 -29979075 - MTD LTR MaLR -14 405 1 3 1543 1328 234 29 19 chr4 125651138 125651447 -29978673 - MER21B LTR ERV1 -172 691 380 3 1543 988 305 37 10 chr4 125651476 125651771 -29978349 - MER21B LTR ERV1 -550 313 11 3 1543 529 245 34 20 chr4 125651850 125651996 -29978124 + RSINE1 SINE B4 12 159 -6 3 1543 1720 182 60 14 chr4 125652047 125652398 -29977722 - ORR1B2 LTR MaLR 0 367 1 3 1543 276 151 0 36 chr4 125652697 125652752 -29977368 + B1_Mm SINE Alu 95 147 0 3 1543 416 85 0 0 chr4 125652785 125652844 -29977276 + B1_Mus2 SINE Alu 1 59 -88 3 1543 465 84 0 0 chr4 125653490 125653561 -29976559 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1543 198 0 0 0 chr4 125653561 125653583 -29976537 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1543 327 104 0 0 chr4 125653661 125653709 -29976411 + (TCTCCC)n Simple_repeat Simple_repeat 6 53 0 3 1543 744 290 67 28 chr4 125653893 125654148 -29975972 + B4A SINE B4 3 267 -25 3 1543 234 295 24 0 chr4 125654532 125654627 -29975493 - MIR SINE MIR -45 163 66 3 1543 386 289 21 0 chr4 125654735 125654832 -29975288 + Lx8 LINE L1 7169 7267 -206 3 1543 24 0 0 0 chr4 125655008 125655032 -29975088 + AT_rich Low_complexity Low_complexity 1 24 0 3 1543 286 234 78 78 chr4 125655545 125655647 -29974473 + PB1D7 SINE Alu 8 109 -11 3 1543 702 202 0 0 chr4 125655648 125655811 -29974309 + (TA)n Simple_repeat Simple_repeat 1 163 0 3 1543 222 262 0 0 chr4 125656176 125656237 -29973883 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 3 1543 327 104 0 0 chr4 125656284 125656332 -29973788 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1543 687 218 33 33 chr4 125656342 125656522 -29973598 - B3A SINE B2 -18 180 1 3 1543 232 218 38 25 chr4 125656772 125656852 -29973268 + L1ME4a LINE L1 6044 6124 0 3 1543 417 296 7 43 chr4 125657341 125657479 -29972641 - MIR SINE MIR -14 248 116 3 1543 323 61 143 0 chr4 125657692 125657741 -29972379 - ORR1A3 LTR MaLR 0 326 271 3 1543 278 0 0 106 chr4 125657742 125657789 -29972331 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1543 1173 61 0 0 chr4 125657793 125657940 -29972180 - B1_Mus2 SINE Alu 0 147 1 3 1543 1178 48 0 0 chr4 125657968 125658115 -29972005 - B1_Mus2 SINE Alu 0 147 1 3 1543 1624 116 27 58 chr4 125658117 125658246 -29971874 - ORR1A3 LTR MaLR -42 284 171 3 1543 1355 95 16 0 chr4 125658246 125658436 -29971684 - B2_Mm2 SINE B2 -1 194 2 3 1543 1624 116 27 58 chr4 125658436 125658599 -29971521 - ORR1A3 LTR MaLR -156 170 1 3 1543 1173 60 72 0 chr4 125658775 125658941 -29971179 + B2_Mm1t SINE B2 2 179 -14 3 1543 242 22 0 21 chr4 125659031 125659078 -29971042 + B2_Mm2 SINE B2 144 189 -6 3 1543 925 125 12 6 chr4 125659115 125659276 -29970844 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 3 1543 272 182 0 35 chr4 125659842 125659899 -29970221 + PB1 SINE Alu 68 122 -5 3 1543 262 225 67 0 chr4 125659922 125660014 -29970106 + ID4_ SINE ID 7 104 -48 3 1543 198 365 40 0 chr4 125660397 125660471 -29969649 - MIRb SINE MIR -83 185 109 3 1543 435 19 0 0 chr4 125662513 125662565 -29967555 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1543 1143 79 0 0 chr4 125662906 125663083 -29967037 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1543 230 288 25 0 chr4 125663397 125663477 -29966643 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 3 1543 1083 82 0 27 chr4 125663659 125663809 -29966311 + B1_Mus2 SINE Alu 2 147 0 3 1543 2268 88 3 58 chr4 125663899 125664247 -29965873 + ORR1A4 LTR MaLR 1 329 0 3 1543 578 241 33 44 chr4 125665365 125665547 -29964573 - B3A SINE B2 -18 180 1 3 1543 429 301 8 31 chr4 125665725 125665852 -29964268 + RSINE1 SINE B4 4 127 -38 3 1543 231 237 52 31 chr4 125665856 125665952 -29964168 + Lx4B LINE L1 6960 7057 -1 3 1543 207 208 21 0 chr4 125666023 125666071 -29964049 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1543 301 340 86 15 chr4 125666130 125666299 -29963821 + MIRc SINE MIR 22 193 -75 3 1543 999 32 0 0 chr4 125667361 125667484 -29962636 + (CA)n Simple_repeat Simple_repeat 1 123 0 3 1543 1068 202 110 26 chr4 125668370 125668503 -29961617 - RLTR25B LTR ERVK 0 1028 888 3 1543 333 123 0 0 chr4 125668503 125668568 -29961552 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1543 1068 202 110 26 chr4 125668568 125668698 -29961422 - RLTR25B LTR ERVK -141 887 744 3 1543 1248 48 7 0 chr4 125668964 125669111 -29961009 + B1_Mus1 SINE Alu 1 148 0 3 1543 212 171 0 0 chr4 125669111 125669152 -29960968 + A-rich Low_complexity Low_complexity 1 41 0 3 1543 240 207 17 17 chr4 125669285 125669344 -29960776 - RLTR25B LTR ERVK -245 783 725 3 1543 1239 41 7 0 chr4 125669393 125669538 -29960582 - B1_Mm SINE Alu 0 147 2 3 1543 340 158 0 17 chr4 125669540 125669598 -29960522 - RLTR25B LTR ERVK -316 787 731 3 1543 1888 131 234 18 chr4 125669593 125669973 -29960147 - RLTR25B LTR ERVK -465 563 102 3 1543 776 167 105 20 chr4 125669985 125670231 -29959889 + MTC-int LTR MaLR 841 1206 -52 3 1543 310 109 22 0 chr4 125670225 125670271 -29959849 - RLTR25B LTR ERVK -1056 47 1 3 1543 295 191 0 200 chr4 125670704 125670809 -29959311 + B4 SINE B4 3 86 -206 3 1543 1596 146 88 28 chr4 125670874 125671044 -29959076 + RMER17C LTR ERVK 1 188 -222 3 1543 1055 127 0 6 chr4 125671044 125671218 -29958902 + (TCC)n Simple_repeat Simple_repeat 2 174 0 3 1543 1596 146 88 28 chr4 125671218 125671434 -29958686 + RMER17C LTR ERVK 189 410 0 3 1543 2313 167 164 9 chr4 125671473 125672092 -29958028 + MTC-int LTR MaLR 438 1258 0 3 1543 2238 127 23 131 chr4 125672092 125672192 -29957928 + MTC LTR MaLR 1 96 -325 3 1543 1299 27 0 0 chr4 125672192 125672339 -29957781 + B1_Mm SINE Alu 1 147 0 3 1543 2238 127 23 131 chr4 125672339 125672710 -29957410 + MTC LTR MaLR 97 421 0 3 1543 1212 186 47 31 chr4 125672710 125672965 -29957155 + MTC-int LTR MaLR 1 259 -999 3 1543 1221 54 7 0 chr4 125672965 125673112 -29957008 + B1_Mus1 SINE Alu 1 148 0 3 1543 261 0 0 0 chr4 125673125 125673154 -29956966 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1543 417 207 0 58 chr4 125673159 125673246 -29956874 + B4 SINE B4 211 292 0 3 1543 478 263 16 48 chr4 125673452 125673506 -29956614 - ID_B1 SINE B4 -7 217 169 3 1543 3038 63 47 0 chr4 125673506 125673888 -29956232 - MTB LTR MaLR 0 400 1 3 1543 478 263 16 48 chr4 125673888 125673957 -29956163 - ID_B1 SINE B4 -56 168 98 3 1543 365 0 0 22 chr4 125674224 125674270 -29955850 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1543 478 304 187 35 chr4 125674421 125674768 -29955352 + LTR33A_ LTR ERVL 33 432 -99 3 1543 5359 144 87 12 chr4 125674771 125674968 -29955152 - RLTR25B LTR ERVK 0 1028 835 3 1543 369 0 0 0 chr4 125674968 125675009 -29955111 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1543 5359 144 87 12 chr4 125675009 125675768 -29954352 - RLTR25B LTR ERVK -194 834 3 3 1543 238 274 32 0 chr4 125676083 125676145 -29953975 + (CACG)n Simple_repeat Simple_repeat 4 67 0 3 1543 821 199 7 27 chr4 125676421 125676571 -29953549 - B1_Mus2 SINE Alu 0 147 1 3 1543 21 0 0 0 chr4 125676571 125676592 -29953528 + AT_rich Low_complexity Low_complexity 1 21 0 3 1543 231 61 0 0 chr4 125676761 125676794 -29953326 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1543 1106 56 34 20 chr4 125676797 125676943 -29953177 - B1_Mus1 SINE Alu 0 148 1 3 1543 450 260 66 64 chr4 125677020 125677298 -29952822 + ORR1E LTR MaLR 149 405 -14 3 1543 501 246 51 29 chr4 125677479 125677617 -29952503 - ID_B1 SINE B4 0 224 84 3 1543 1090 114 115 34 chr4 125677677 125677886 -29952234 + URR1A DNA MER1_type 1 226 0 3 1543 696 111 9 18 chr4 125678344 125678454 -29951666 + B1_Mus1 SINE Alu 30 138 -10 3 1543 369 260 58 109 chr4 125678617 125678755 -29951365 - B3 SINE B2 -1 215 85 3 1543 230 164 17 52 chr4 125679041 125679099 -29951021 + C-rich Low_complexity Low_complexity 2 57 0 3 1543 769 199 0 7 chr4 125679889 125680026 -29950094 - B1_Mur1 SINE Alu -1 148 13 3 1543 2710 82 8 11 chr4 125680450 125680819 -29949301 - L1Md_F2 LINE L1 -12 6570 6203 3 1543 391 316 112 28 chr4 125681415 125681594 -29948526 - L4 LINE RTE -133 1896 1703 3 1543 1521 53 37 0 chr4 125681670 125681858 -29948262 + B2_Mm2 SINE B2 1 195 0 3 1543 197 119 24 0 chr4 125681949 125681991 -29948129 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1543 276 218 0 0 chr4 125682450 125682505 -29947615 - B1F SINE Alu -74 75 21 3 1543 267 308 76 17 chr4 125682482 125682601 -29947519 + B4A SINE B4 145 270 -22 3 1543 444 67 0 0 chr4 125682628 125682688 -29947432 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1543 261 275 0 28 chr4 125682769 125682840 -29947280 + ID4 SINE ID 5 73 -10 3 1543 360 0 0 0 chr4 125682840 125682880 -29947240 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1543 266 256 0 32 chr4 125682902 125682995 -29947125 + L1MEe LINE L1 1177 1266 -4976 3 1543 242 154 0 0 chr4 125683160 125683199 -29946921 - RMER6D LTR ERVK -681 39 1 3 1543 228 274 19 70 chr4 125683241 125683398 -29946722 + ORR1B1-int LTR MaLR 605 753 -756 3 1543 506 111 24 150 chr4 125683277 125683404 -29946716 + MT2B LTR ERVL 154 264 -337 4 1543 1100 78 0 0 chr4 125683297 125683438 -29946682 + B1_Mus1 SINE Alu 7 147 -1 4 1543 323 271 80 68 chr4 125683611 125683773 -29946347 + RSINE1 SINE B4 2 165 0 4 1543 355 333 93 43 chr4 125683788 125684089 -29946031 + L1MEe LINE L1 1962 2277 -3889 3 1543 770 155 93 0 chr4 125684129 125684258 -29945862 + B1F2 SINE Alu 3 143 -6 4 1543 243 188 0 0 chr4 125684262 125684310 -29945810 + A-rich Low_complexity Low_complexity 1 48 0 4 1543 237 262 65 37 chr4 125684629 125684736 -29945384 + L1MEe LINE L1 2809 2918 -3228 3 1543 551 293 44 6 chr4 125684758 125684916 -29945204 + RSINE1 SINE B4 2 165 0 4 1543 23 0 0 0 chr4 125684957 125684980 -29945140 + AT_rich Low_complexity Low_complexity 1 23 0 4 1543 742 203 0 45 chr4 125684999 125685154 -29944966 + B1_Mur2 SINE Alu 1 148 -1 4 1543 320 274 75 75 chr4 125685287 125685433 -29944687 + PB1D10 SINE Alu 1 146 -3 4 1543 313 207 163 109 chr4 125685432 125685524 -29944596 + B1F1 SINE Alu 1 98 -51 4 1543 1116 219 37 22 chr4 125685549 125685871 -29944249 + L1MA5 LINE L1 5973 6299 -1 4 1543 506 272 189 80 chr4 125685937 125686201 -29943919 + L1MEe LINE L1 3046 3338 -2808 3 1543 450 229 17 52 chr4 125686462 125686599 -29943521 - PB1D10 SINE Alu -13 136 6 4 1543 587 185 179 0 chr4 125686719 125686881 -29943239 - L1MA7 LINE L1 -10 6281 6091 4 1543 225 182 0 0 chr4 125687046 125687090 -29943030 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 4 1543 275 290 234 44 chr4 125687092 125687229 -29942891 - RSINE1 SINE B4 0 165 3 4 1543 231 264 13 77 chr4 125687258 125687336 -29942784 - U13 snRNA snRNA -1 107 35 4 1543 655 223 78 0 chr4 125687391 125687557 -29942563 - B3A SINE B2 -18 180 2 4 1543 238 254 109 0 chr4 125687821 125687876 -29942244 + B1F SINE Alu 6 66 -83 4 1543 192 152 0 0 chr4 125687901 125687934 -29942186 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1543 1001 238 14 0 chr4 125687934 125688144 -29941976 - B3 SINE B2 -1 215 3 4 1543 333 291 0 0 chr4 125688146 125688225 -29941895 + B1F SINE Alu 58 136 -13 4 1543 721 179 8 16 chr4 125688254 125688387 -29941733 - MTC LTR MaLR -10 411 267 4 1543 1055 180 85 30 chr4 125688387 125688587 -29941533 + B3 SINE B2 1 211 -5 4 1543 575 236 13 40 chr4 125688587 125688603 -29941517 - MTC LTR MaLR -141 266 252 4 1543 184 59 59 0 chr4 125688670 125688704 -29941416 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1543 1472 72 0 15 chr4 125688744 125688941 -29941179 + B2_Mm2 SINE B2 2 195 0 4 1543 340 310 73 21 chr4 125688945 125689136 -29940984 + L1MEe LINE L1 4534 4734 -1412 3 1543 378 176 108 0 chr4 125689233 125689307 -29940813 + B3 SINE B2 130 211 -5 4 1543 237 65 0 0 chr4 125689309 125689340 -29940780 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1543 1236 41 7 0 chr4 125689704 125689850 -29940270 + B1_Mus2 SINE Alu 1 147 0 4 1543 330 240 207 0 chr4 125689873 125689994 -29940126 - L1MB8 LINE L1 -6 6172 6027 4 1543 1634 37 0 0 chr4 125690066 125690257 -29939863 + B2_Mm1a SINE B2 2 192 -1 4 1543 342 99 13 53 chr4 125690272 125690347 -29939773 + G-rich Low_complexity Low_complexity 5 76 0 4 1543 243 0 0 0 chr4 125690347 125690374 -29939746 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1543 465 62 0 0 chr4 125690474 125690539 -29939581 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1543 355 280 11 11 chr4 125690681 125690775 -29939345 + B4A SINE B4 181 274 -18 4 1543 621 250 0 8 chr4 125690846 125690971 -29939149 + B3A SINE B2 6 129 -69 4 1543 1410 148 6 6 chr4 125691270 125691603 -29938517 + (TGGA)n Simple_repeat Simple_repeat 1 333 0 4 1543 181 340 67 60 chr4 125692786 125692936 -29937184 + L3 LINE CR1 4011 4161 -328 4 1543 591 233 276 96 chr4 125693132 125693444 -29936676 - MTD LTR MaLR -14 405 53 4 1543 218 233 176 14 chr4 125693970 125694044 -29936076 + MIR SINE MIR 46 131 -77 4 1543 423 264 51 89 chr4 125694120 125694155 -29935965 + B3A SINE B2 9 33 -165 4 1543 1207 87 25 90 chr4 125694155 125694356 -29935764 + B2_Mm2 SINE B2 3 190 -5 4 1543 423 262 113 135 chr4 125694356 125694505 -29935615 + B3A SINE B2 34 189 -6 4 1543 1408 53 36 26 chr4 125694513 125694705 -29935415 + B2_Mm2 SINE B2 1 194 -1 4 1543 282 143 41 0 chr4 125694879 125694928 -29935192 - B1F SINE Alu -3 146 96 4 1543 684 232 60 46 chr4 125695563 125695780 -29934340 + ID_B1 SINE B4 5 224 0 4 1543 721 263 51 0 chr4 125695793 125695936 -29934184 + B3 SINE B2 7 152 -64 4 1543 452 93 0 13 chr4 125695936 125696012 -29934108 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1543 721 263 51 0 chr4 125696012 125696043 -29934077 + B3 SINE B2 153 189 -27 4 1543 639 282 0 67 chr4 125696068 125696262 -29933858 + B3A SINE B2 2 182 -16 4 1543 331 271 168 0 chr4 125696300 125696407 -29933713 - MIR SINE MIR -130 132 8 4 1543 339 271 0 78 chr4 125696696 125696812 -29933308 - PB1D10 SINE Alu -1 116 10 4 1543 203 302 0 0 chr4 125696985 125697028 -29933092 - L2c LINE L2 -77 3310 3268 4 1543 983 120 172 5 chr4 125697278 125697470 -29932650 + URR1B DNA MER1_type 2 225 0 4 192 2019 206 93 27 chr4 125697616 125698090 -29932030 + RLTR18B LTR ERVK 3 507 -5 4 1544 974 215 72 0 chr4 125698309 125698504 -29931616 - B3 SINE B2 -6 210 2 4 1544 556 241 36 36 chr4 125698508 125698646 -29931474 - B1F1 SINE Alu -3 146 9 4 1544 182 299 60 0 chr4 125698661 125698728 -29931392 - L2a LINE L2 -76 3350 3280 4 1544 507 308 63 49 chr4 125698782 125699094 -29931026 - L2a LINE L2 -261 3165 2832 4 1544 551 205 129 38 chr4 125699440 125699572 -29930548 + B1_Mur2 SINE Alu 3 146 -3 4 1544 1197 228 192 8 chr4 125699680 125700034 -29930086 + MTD LTR MaLR 1 419 0 4 1544 601 281 72 65 chr4 125700034 125700119 -29930001 + MTE-int LTR MaLR 1308 1394 -186 4 1544 585 48 0 35 chr4 125700119 125700206 -29929914 + L1_Mus2 LINE L1 6482 6565 -1 4 1544 601 281 72 65 chr4 125700206 125700227 -29929893 + MTE-int LTR MaLR 1395 1417 -163 4 1544 920 118 66 7 chr4 125700227 125700364 -29929756 - B1_Mm SINE Alu -2 145 1 4 1544 601 281 72 65 chr4 125700364 125700525 -29929595 + MTE-int LTR MaLR 1418 1577 -3 4 1544 934 253 132 46 chr4 125700528 125700855 -29929265 + MT2A LTR ERVL 3 357 -176 4 1544 180 200 0 0 chr4 125700926 125700966 -29929154 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1544 210 143 0 0 chr4 125700965 125701000 -29929120 + (CG)n Simple_repeat Simple_repeat 2 36 0 4 1544 1079 119 18 6 chr4 125701047 125701216 -29928904 + URR1B DNA MER1_type 55 225 0 4 1544 679 266 72 26 chr4 125702473 125702666 -29927454 - ID_B1 SINE B4 -21 203 2 4 1544 303 348 36 8 chr4 125702673 125702816 -29927304 - B1F SINE Alu -1 148 1 4 1544 548 312 30 30 chr4 125703257 125703487 -29926633 - MIRb SINE MIR -21 247 10 4 1544 2163 182 51 10 chr4 125703829 125704223 -29925897 - MTD LTR MaLR -9 410 1 4 1544 231 270 32 0 chr4 125704703 125704766 -29925354 - L2a LINE L2 -50 3376 3312 4 1544 839 207 0 0 chr4 125705107 125705257 -29924863 + B1_Mur4 SINE Alu 1 150 0 4 1544 351 60 14 29 chr4 125705680 125705740 -29924380 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 4 1544 1269 48 0 0 chr4 125705740 125705886 -29924234 - B1_Mus2 SINE Alu -1 146 1 4 1544 351 60 14 29 chr4 125705886 125705894 -29924226 + (TTTG)n Simple_repeat Simple_repeat 1 8 0 4 1544 184 338 12 36 chr4 125705902 125705985 -29924135 - MIR SINE MIR -115 147 67 4 1544 828 121 72 128 chr4 125706086 125706216 -29923904 - B2_Mm2 SINE B2 -3 192 60 4 1544 1222 75 0 0 chr4 125706216 125706363 -29923757 + B1_Mus1 SINE Alu 2 148 0 4 1544 828 121 72 128 chr4 125706363 125706412 -29923708 - B2_Mm2 SINE B2 -136 59 23 4 1544 404 252 35 53 chr4 125707704 125707817 -29922303 - PB1D9 SINE Alu -9 111 1 4 1544 306 180 0 0 chr4 125707857 125707907 -29922213 + PB1D9 SINE Alu 58 107 -13 4 1544 378 321 21 55 chr4 125707938 125708021 -29922099 + ID SINE ID 2 79 -145 4 1544 287 375 9 19 chr4 125708021 125708127 -29921993 + PB1D10 SINE Alu 1 105 -12 4 1544 1132 242 147 15 chr4 125708202 125708529 -29921591 - ORR1D2 LTR MaLR 0 370 1 4 1544 418 315 0 103 chr4 125708501 125708547 -29921573 + ID_B1 SINE B4 57 219 -3 4 1544 742 174 15 29 chr4 125708547 125708683 -29921437 + B1_Mus2 SINE Alu 9 142 -5 4 1544 357 24 0 0 chr4 125708685 125708727 -29921393 + (GGA)n Simple_repeat Simple_repeat 3 44 0 4 1544 331 307 30 59 chr4 125708730 125708865 -29921255 - MIR SINE MIR -89 173 43 4 1544 237 33 0 0 chr4 125708973 125709003 -29921117 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1544 1177 55 7 0 chr4 125709736 125709882 -29920238 - B1_Mm SINE Alu 0 147 1 4 1544 208 188 0 20 chr4 125709886 125709935 -29920185 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 4 1544 1339 99 0 20 chr4 125709949 125710145 -29919975 - B2_Mm2 SINE B2 0 195 4 4 1544 586 81 0 0 chr4 125710149 125710223 -29919897 - B2_Mm2 SINE B2 -120 75 2 4 1544 529 146 40 40 chr4 125710229 125710329 -29919791 - B1_Mur3 SINE Alu -2 147 48 4 1544 210 71 0 0 chr4 125710332 125710360 -29919760 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1544 306 341 88 99 chr4 125710376 125710582 -29919538 - B4A SINE B4 -8 284 79 4 1544 1460 29 17 22 chr4 125710582 125710760 -29919360 - B2_Mm2 SINE B2 -14 181 5 4 1544 892 139 220 28 chr4 125710761 125710938 -29919182 - B3 SINE B2 -4 212 2 4 1544 306 341 88 99 chr4 125710938 125711012 -29919108 - B4A SINE B4 -214 78 5 4 1544 212 375 9 19 chr4 125711167 125711273 -29918847 - L2a LINE L2 -282 3144 3040 4 1544 1319 85 0 17 chr4 125711896 125712075 -29918045 + B2_Mm2 SINE B2 1 176 -19 4 1544 1113 109 80 11 chr4 125712101 125712121 -29917999 - B2_Mm2 SINE B2 -7 188 169 4 1544 1332 77 60 0 chr4 125712121 125712303 -29917817 + B2_Mm2 SINE B2 1 193 -2 4 1544 1113 109 80 11 chr4 125712303 125712458 -29917662 - B2_Mm2 SINE B2 -27 168 1 4 1544 350 21 21 0 chr4 125713415 125713462 -29916658 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1544 1138 52 0 0 chr4 125713462 125713597 -29916523 - B1_Mus2 SINE Alu -11 136 2 4 1544 423 0 0 0 chr4 125713687 125713734 -29916386 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 5 1544 639 314 112 45 chr4 125713760 125714027 -29916093 - B4 SINE B4 -6 286 2 5 1544 1092 113 62 6 chr4 125714039 125714217 -29915903 - B2_Mm2 SINE B2 -7 188 1 5 1544 236 222 121 45 chr4 125714219 125714285 -29915835 + MIR SINE MIR 79 149 -113 5 1544 1261 54 0 0 chr4 125714287 125714434 -29915686 + B1_Mus2 SINE Alu 1 147 0 5 1544 189 0 0 0 chr4 125714434 125714455 -29915665 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1544 373 349 76 36 chr4 125714508 125714731 -29915389 - MIRb SINE MIR -14 254 23 5 1544 684 0 0 0 chr4 125715902 125715978 -29914142 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 5 1544 320 161 30 130 chr4 125716083 125716178 -29913942 - RSINE1 SINE B4 0 165 81 5 1544 781 284 85 44 chr4 125716178 125716495 -29913625 + MTD LTR MaLR 1 330 -89 5 1544 449 266 0 0 chr4 125716533 125716637 -29913483 - B1F1 SINE Alu -16 104 1 5 1544 215 348 65 11 chr4 125716555 125716648 -29913472 - B4 SINE B4 -125 167 70 5 1544 594 117 21 0 chr4 125717202 125717296 -29912824 + B1_Mus2 SINE Alu 20 115 -32 5 1544 611 167 6 209 chr4 125717302 125717484 -29912636 + B1_Mur3 SINE Alu 2 146 -3 5 1544 591 40 0 0 chr4 125717484 125717558 -29912562 + (GAA)n Simple_repeat Simple_repeat 2 75 0 5 1544 225 0 0 0 chr4 125717601 125717626 -29912494 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 1544 201 39 0 0 chr4 125717632 125717658 -29912462 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1544 961 122 14 7 chr4 125717680 125717828 -29912292 + B1_Mur4 SINE Alu 2 150 0 5 1544 1240 233 31 81 chr4 125717966 125717982 -29912138 - RCHARR1 DNA MER1_type 0 974 963 5 1544 1248 109 0 26 chr4 125717982 125718171 -29911949 - B2_Mm2 SINE B2 -10 185 2 5 1544 1240 233 31 81 chr4 125718171 125718194 -29911926 - RCHARR1 DNA MER1_type -12 962 948 5 1544 1121 36 51 0 chr4 125718194 125718331 -29911789 - B1_Mm SINE Alu -2 145 2 5 1544 1240 233 31 81 chr4 125718331 125718673 -29911447 - RCHARR1 DNA MER1_type -27 947 611 5 1544 1168 222 45 155 chr4 125718664 125718763 -29911357 - RCHARR1 DNA MER1_type -493 481 395 5 1544 868 112 90 0 chr4 125718763 125718897 -29911223 + B1_Mur4 SINE Alu 4 149 -1 5 1544 1168 222 45 155 chr4 125718897 125719197 -29910923 - RCHARR1 DNA MER1_type -580 394 126 5 1544 1060 117 251 0 chr4 125719224 125719395 -29910725 - B3 SINE B2 -2 214 1 5 1544 825 157 66 22 chr4 125719425 125719562 -29910558 - B1_Mur4 SINE Alu -7 143 1 5 1544 201 125 33 82 chr4 125719562 125719623 -29910497 + T-rich Low_complexity Low_complexity 4 61 0 5 1544 1299 27 0 0 chr4 125719623 125719770 -29910350 - B1_Mus2 SINE Alu 0 147 1 5 1544 542 229 0 44 chr4 125721382 125721496 -29908624 + PB1D10 SINE Alu 2 110 -7 5 1544 1244 55 0 0 chr4 125721500 125721645 -29908475 + B1_Mm SINE Alu 2 146 -1 5 1544 430 294 64 48 chr4 125721717 125721842 -29908278 - RSINE1 SINE B4 -37 128 2 5 1544 1164 136 9 29 chr4 125721886 125722087 -29908033 - B2_Mm2 SINE B2 -6 210 2 5 1544 776 125 76 23 chr4 125722093 125722224 -29907896 - B1_Mus1 SINE Alu -1 147 10 5 1544 393 22 0 0 chr4 125722287 125722333 -29907787 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 5 1544 471 206 78 0 chr4 125722344 125722446 -29907674 - B3 SINE B2 0 216 107 5 1544 846 64 0 9 chr4 125722431 125722541 -29907579 - B1_Mm SINE Alu -38 109 1 5 1544 245 257 43 0 chr4 125722541 125722611 -29907509 - B4A SINE B4 -96 196 124 5 1544 244 253 37 25 chr4 125722627 125722708 -29907412 - B2_Mm1t SINE B2 -111 82 1 5 1544 1037 237 9 19 chr4 125722713 125722928 -29907192 - ID_B1 SINE B4 -7 217 5 5 1544 263 18 52 52 chr4 125723501 125723559 -29906561 - B2_Mm2 SINE B2 0 195 138 5 1544 1451 53 32 0 chr4 125723577 125723765 -29906355 - B2_Mm2 SINE B2 -1 194 1 5 1544 1297 154 13 35 chr4 125723768 125723996 -29906124 - URR1A DNA MER1_type 0 226 4 5 1544 1465 58 27 0 chr4 125726254 125726442 -29903678 + B2_Mm2 SINE B2 3 195 0 5 1544 261 294 97 1 chr4 125726501 125726598 -29903522 - MIR3 SINE MIR -158 110 4 5 1544 774 245 29 59 chr4 125726804 125727008 -29903112 - B3A SINE B2 0 198 1 5 1544 808 225 80 0 chr4 125727214 125727401 -29902719 - B3 SINE B2 -11 205 4 5 1544 539 251 57 79 chr4 125727481 125727658 -29902462 + B3A SINE B2 11 183 -15 5 1544 1528 168 160 30 chr4 125727994 125728332 -29901788 - ORR1C2 LTR MaLR -2 382 1 5 1544 875 175 113 0 chr4 125729261 125729438 -29900682 - B3 SINE B2 -17 199 3 5 1544 409 228 194 8 chr4 125729553 125729677 -29900443 - RSINE1 SINE B4 -2 163 17 5 1544 475 242 23 61 chr4 125729794 125729913 -29900207 + Charlie12 DNA MER1_type 1 117 -2756 5 1544 183 42 0 0 chr4 125729913 125729937 -29900183 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 5 1544 475 242 23 61 chr4 125729937 125729949 -29900171 + Charlie12 DNA MER1_type 118 127 -2746 5 1544 1065 113 220 5 chr4 125729973 125730159 -29899961 - URR1A DNA MER1_type 0 226 1 5 1544 290 264 148 11 chr4 125730159 125730247 -29899873 - B1_Mur1 SINE Alu -9 140 41 5 1544 372 298 0 0 chr4 125730247 125730331 -29899789 - RMER30 DNA MER1_type -110 92 9 5 1544 228 255 0 18 chr4 125730306 125730362 -29899758 + RMER12 LTR ERVK 707 761 -561 5 1544 214 316 177 0 chr4 125730377 125730456 -29899664 + ID_B1 SINE B4 97 189 -35 5 1544 258 231 0 0 chr4 125731026 125731078 -29899042 + L2a LINE L2 3375 3426 0 5 1544 239 241 216 74 chr4 125731080 125731228 -29898892 + MIRb SINE MIR 69 237 -31 5 1544 285 316 30 12 chr4 125731449 125731541 -29898579 - PB1D10 SINE Alu -52 97 2 5 1544 311 307 39 69 chr4 125731773 125731976 -29898144 + MIRb SINE MIR 2 198 -70 5 1544 244 313 27 100 chr4 125732050 125732160 -29897960 + MT2B2 LTR ERVL 153 254 -330 5 1544 605 250 0 0 chr4 125732065 125732177 -29897943 + PB1D7 SINE Alu 7 118 -2 5 1544 190 206 162 0 chr4 125732955 125733023 -29897097 - L2b LINE L2 -260 3115 3037 5 1544 1222 55 7 0 chr4 125733128 125733274 -29896846 + B1_Mus1 SINE Alu 2 148 0 5 1544 1001 142 7 0 chr4 125733297 125733445 -29896675 + B1_Mur4 SINE Alu 2 150 0 5 1544 421 257 99 0 chr4 125733618 125733719 -29896401 + ID_B1 SINE B4 107 217 -7 5 1544 23 0 0 0 chr4 125733743 125733766 -29896354 + AT_rich Low_complexity Low_complexity 1 23 0 5 1544 644 171 38 0 chr4 125734100 125734205 -29895915 - B1_Mus1 SINE Alu -35 113 5 5 1544 1446 70 5 0 chr4 125734299 125734486 -29895634 - B2_Mm1a SINE B2 -3 190 3 5 1544 463 188 269 17 chr4 125734490 125734609 -29895511 - B1_Mur2 SINE Alu 0 149 1 5 1544 721 124 18 26 chr4 125734774 125734910 -29895210 + B1_Mur3 SINE Alu 15 149 0 5 1544 3629 13 2 0 chr4 125737110 125737505 -29892615 - MTA_Mm LTR MaLR 0 396 1 5 1544 300 280 185 8 chr4 125737987 125738106 -29892014 + MIRb SINE MIR 29 168 -100 5 1544 1217 55 0 0 chr4 125738179 125738324 -29891796 + B1_Mus2 SINE Alu 1 145 -2 5 1544 234 337 54 11 chr4 125738350 125738363 -29891757 - PB1D7 SINE Alu -6 114 18 5 1544 293 279 12 12 chr4 125738363 125738443 -29891677 - ID_B1 SINE B4 -46 178 99 5 1544 385 240 167 0 chr4 125738676 125738772 -29891348 - PB1D7 SINE Alu 0 120 9 5 1544 1231 60 0 7 chr4 125738825 125738975 -29891145 + B1_Mur4 SINE Alu 2 150 0 5 1544 204 179 0 0 chr4 125739267 125739306 -29890814 + (CACG)n Simple_repeat Simple_repeat 1 39 0 5 1544 1521 42 26 0 chr4 125739355 125739544 -29890576 + B2_Mm2 SINE B2 2 195 0 5 1544 204 247 48 131 chr4 125739968 125740052 -29890068 - MIRm SINE MIR -96 180 104 5 1544 232 125 42 0 chr4 125740058 125740106 -29890014 + T-rich Low_complexity Low_complexity 2 51 0 5 1544 180 0 0 0 chr4 125740517 125740537 -29889583 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1544 312 268 128 16 chr4 125740707 125740832 -29889288 - B1F1 SINE Alu -8 141 3 5 1544 243 140 0 0 chr4 125740845 125740895 -29889225 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1544 225 0 0 0 chr4 125740952 125740977 -29889143 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 1544 1251 41 0 0 chr4 125740977 125741122 -29888998 - B1_Mus2 SINE Alu -2 145 1 5 1544 195 235 0 0 chr4 125741513 125741564 -29888556 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 5 1544 720 181 0 0 chr4 125741564 125741680 -29888440 - PB1D9 SINE Alu -3 117 2 5 1544 1452 69 21 0 chr4 125741690 125741878 -29888242 - B2_Mm2 SINE B2 -3 192 1 5 1544 1570 62 0 5 chr4 125743092 125743287 -29886833 + B2_Mm2 SINE B2 2 195 0 5 1544 632 211 49 76 chr4 125743713 125743857 -29886263 + B1_Mur1 SINE Alu 9 148 -1 5 1544 635 191 27 9 chr4 125743863 125743974 -29886146 + RSINE1 SINE B4 13 125 -40 5 1544 399 21 0 0 chr4 125743977 125744025 -29886095 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1544 230 287 0 194 chr4 125744047 125744073 -29886047 + 4.5SRNA scRNA scRNA 2 22 -72 5 1544 964 222 14 14 chr4 125744073 125744283 -29885837 - B3 SINE B2 -6 210 1 5 1544 230 287 0 194 chr4 125744283 125744364 -29885756 + 4.5SRNA scRNA scRNA 23 88 -6 5 1544 674 225 47 0 chr4 125744364 125744412 -29885708 + B1_Mur1 SINE Alu 13 147 -2 5 1544 24 0 0 0 chr4 125744415 125744439 -29885681 + AT_rich Low_complexity Low_complexity 1 24 0 5 1544 333 328 138 20 chr4 125744439 125744635 -29885485 + MIRb SINE MIR 42 260 -8 5 1544 183 42 0 0 chr4 125745948 125745972 -29884148 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1544 1406 190 155 19 chr4 125746527 125746849 -29883271 - ORR1D1 LTR MaLR -8 366 1 5 1544 255 253 19 122 chr4 125746919 125746966 -29883154 + MT2B LTR ERVL 115 221 -363 6 1544 502 49 0 0 chr4 125746976 125747037 -29883083 + B1_Mus1 SINE Alu 5 65 -83 6 1544 297 0 0 0 chr4 125747037 125747070 -29883050 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1544 230 279 86 99 chr4 125747500 125747517 -29882603 + B4A SINE B4 73 87 -205 6 1544 693 125 25 4 chr4 125747517 125747658 -29882462 + B1_Mus1 SINE Alu 4 143 -5 6 1544 191 167 24 0 chr4 125747681 125747723 -29882397 + GA-rich Low_complexity Low_complexity 2 44 0 6 1544 300 258 19 47 chr4 125747723 125747829 -29882291 + ID_B1 SINE B4 122 224 0 6 1544 853 170 0 26 chr4 125748020 125748171 -29881949 + B1_Mus1 SINE Alu 2 148 0 6 1544 209 159 23 0 chr4 125748184 125748228 -29881892 + GA-rich Low_complexity Low_complexity 1 45 0 6 1544 1280 97 17 0 chr4 125748258 125748433 -29881687 + B2_Mm1a SINE B2 2 179 -14 6 1544 910 102 13 33 chr4 125748473 125748625 -29881495 + B2_Mm2 SINE B2 47 195 0 6 1544 713 215 10 102 chr4 125748649 125748846 -29881274 + B3A SINE B2 2 180 -18 6 1544 512 263 7 50 chr4 125748886 125749026 -29881094 + RSINE1 SINE B4 4 137 -28 6 1544 192 40 0 0 chr4 125749028 125749053 -29881067 + (CACCC)n Simple_repeat Simple_repeat 4 28 0 6 1544 360 247 39 52 chr4 125749574 125749728 -29880392 + RSINE1 SINE B4 3 154 -11 6 1544 231 152 0 0 chr4 125749763 125749809 -29880311 + T-rich Low_complexity Low_complexity 2 47 0 6 1544 722 187 32 0 chr4 125749813 125749936 -29880184 - B1_Mur1 SINE Alu -2 147 21 6 1544 216 0 0 0 chr4 125749972 125749996 -29880124 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 1544 259 58 77 0 chr4 125750043 125750095 -29880025 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 6 1544 1231 48 7 0 chr4 125750095 125750241 -29879879 - B1_Mus1 SINE Alu 0 148 2 6 1544 27 29 0 0 chr4 125750241 125750275 -29879845 + AT_rich Low_complexity Low_complexity 1 34 0 6 1544 836 200 148 21 chr4 125750275 125750464 -29879656 - B3 SINE B2 -2 214 2 6 1544 699 12 0 0 chr4 125750486 125750566 -29879554 + (CTTTG)n Simple_repeat Simple_repeat 5 84 0 6 1544 652 73 84 134 chr4 125750566 125750708 -29879412 - B1_Mur4 SINE Alu -14 136 2 6 1544 848 150 27 41 chr4 125751618 125751764 -29878356 + B1_Mur4 SINE Alu 1 144 -6 6 1544 781 211 124 5 chr4 125751942 125752128 -29877992 - B3 SINE B2 -5 211 4 6 1544 468 191 28 0 chr4 125752355 125752466 -29877654 + L1MC3 LINE L1 7306 7396 -389 6 1544 523 328 22 6 chr4 125752525 125752706 -29877414 + B3A SINE B2 15 198 0 6 1544 1136 250 54 7 chr4 125752846 125753124 -29876996 + B4 SINE B4 2 292 0 6 1544 796 230 106 10 chr4 125753166 125753364 -29876756 - ID_B1 SINE B4 -7 217 1 6 1544 1124 102 7 0 chr4 125755518 125755665 -29874455 + B1_Mus1 SINE Alu 1 148 0 6 1544 254 297 10 52 chr4 125756562 125756579 -29873541 + MT2B LTR ERVL 157 246 -353 6 1544 334 273 26 0 chr4 125756579 125756656 -29873464 + ID_B1 SINE B4 91 169 -55 6 1544 1254 51 0 0 chr4 125756972 125757130 -29872990 + (TTCTCC)n Simple_repeat Simple_repeat 5 162 0 6 1544 1168 100 6 29 chr4 125757135 125757310 -29872810 - B2_Mm1t SINE B2 -22 171 1 6 1544 1661 42 0 0 chr4 125757324 125757517 -29872603 - B2_Mm1a SINE B2 0 193 1 6 1544 324 308 32 21 chr4 125757655 125757748 -29872372 - B1_Mur2 SINE Alu -54 95 2 6 1544 369 0 0 0 chr4 125757999 125758040 -29872080 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1544 198 229 81 16 chr4 125758587 125758649 -29871471 - L3 LINE CR1 -6 4483 4418 6 1544 779 171 190 233 chr4 125758827 125759217 -29870903 - ORR1D1 LTR MaLR 0 374 2 6 1544 222 288 61 0 chr4 125759285 125759351 -29870769 - ID SINE ID -153 71 2 6 1544 183 194 0 0 chr4 125759370 125759406 -29870714 - MIR SINE MIR 0 262 227 6 1544 203 219 24 0 chr4 125759374 125759415 -29870705 - L2b LINE L2 -10 3365 3324 6 1544 1247 35 7 0 chr4 125759573 125759718 -29870402 + B1_Mus2 SINE Alu 1 146 -1 6 1544 287 269 31 3 chr4 125759799 125759869 -29870251 + B3A SINE B2 99 168 -48 6 1544 315 71 0 0 chr4 125759869 125759911 -29870209 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1544 252 303 33 33 chr4 125759911 125759932 -29870188 + B3 SINE B2 169 190 -26 6 1544 24 0 0 0 chr4 125760097 125760121 -29869999 + AT_rich Low_complexity Low_complexity 1 24 0 6 1544 232 278 198 18 chr4 125760402 125760539 -29869581 + MIRm SINE MIR 43 209 -67 6 1544 780 220 106 16 chr4 125761055 125761244 -29868876 + ID_B1 SINE B4 5 210 -14 6 1544 189 0 0 0 chr4 125761757 125761778 -29868342 + (CGGGG)n Simple_repeat Simple_repeat 5 25 0 6 1544 237 62 62 0 chr4 125762595 125762643 -29867477 + (GTTTG)n Simple_repeat Simple_repeat 5 55 0 6 1544 788 148 55 69 chr4 125762646 125762791 -29867329 - B1_Mur4 SINE Alu 0 150 8 6 1544 1334 71 49 0 chr4 125762806 125762990 -29867130 - B2_Mm2 SINE B2 -1 194 2 6 1544 195 125 0 0 chr4 125763009 125763049 -29867071 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1544 1258 48 0 0 chr4 125763051 125763198 -29866922 - B1_Mm SINE Alu 0 147 1 6 1544 211 220 20 0 chr4 125763946 125763996 -29866124 + CT-rich Low_complexity Low_complexity 4 54 0 6 1544 857 205 112 24 chr4 125763996 125764201 -29865919 - ID_B1 SINE B4 0 224 2 6 1544 391 245 134 40 chr4 125764472 125764621 -29865499 + RSINE1 SINE B4 3 165 0 6 1544 700 161 172 8 chr4 125765093 125765250 -29864870 + B3 SINE B2 10 216 0 6 1544 929 128 14 14 chr4 125765264 125765407 -29864713 + B1_Mus1 SINE Alu 5 147 -1 6 1544 743 169 9 6 chr4 125766218 125766353 -29863767 + B2_Mm2 SINE B2 1 139 -77 6 1544 642 155 34 17 chr4 125766353 125766471 -29863649 - PB1D9 SINE Alu 0 120 1 6 1544 733 274 49 34 chr4 125766471 125766539 -29863581 + B3 SINE B2 140 207 -9 6 1544 254 163 59 39 chr4 125766700 125766751 -29863369 + PB1D7 SINE Alu 68 119 -1 6 1544 620 87 0 11 chr4 125766751 125766844 -29863276 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 6 1544 502 291 74 67 chr4 125766858 125767141 -29862979 + B4A SINE B4 5 291 -1 6 1544 252 0 0 0 chr4 125767141 125767169 -29862951 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1544 2096 116 140 6 chr4 125767278 125767642 -29862478 + MTC LTR MaLR 1 413 -8 6 1544 858 117 7 99 chr4 125768423 125768575 -29861545 + B1_Mus1 SINE Alu 1 138 -10 6 1544 180 0 0 0 chr4 125768575 125768595 -29861525 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1544 427 74 0 0 chr4 125768691 125768745 -29861375 - B2_Mm2 SINE B2 -140 55 2 6 1544 206 75 0 48 chr4 125768751 125768793 -29861327 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1544 942 124 7 0 chr4 125768793 125768930 -29861190 - B1_Mur2 SINE Alu -1 148 11 6 1544 359 325 0 0 chr4 125768939 125769022 -29861098 + RMER30 DNA MER1_type 119 201 -1 6 1544 183 42 0 0 chr4 125769534 125769558 -29860562 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1544 324 364 0 50 chr4 125769614 125769753 -29860367 + RSINE1 SINE B4 3 134 -31 6 1544 211 364 59 8 chr4 125769793 125769912 -29860208 + MIR SINE MIR 25 149 -59 6 1544 843 235 48 24 chr4 125770091 125770300 -29859820 + B3 SINE B2 3 216 0 6 1544 1144 71 0 0 chr4 125770410 125770551 -29859569 + B1_Mus1 SINE Alu 1 141 -7 6 1544 872 204 45 0 chr4 125770588 125770745 -29859375 + B3A SINE B2 5 168 -30 6 1544 408 255 43 0 chr4 125770939 125771033 -29859087 + PB1D10 SINE Alu 14 111 -6 6 1544 240 224 266 18 chr4 125771033 125771048 -29859072 + B4A SINE B4 99 234 -58 6 1544 747 234 84 30 chr4 125771058 125771231 -29858889 + B3 SINE B2 2 185 -31 6 1544 288 0 0 0 chr4 125771231 125771263 -29858857 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1544 747 234 84 30 chr4 125771263 125771292 -29858828 + B3 SINE B2 186 215 -1 6 1544 198 0 0 0 chr4 125771686 125771708 -29858412 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1544 547 336 87 9 chr4 125771723 125771942 -29858178 + LTR31 LTR ERV1 205 440 -179 6 1544 1200 88 0 0 chr4 125772035 125772183 -29857937 + B1_Mus1 SINE Alu 1 148 0 6 1544 244 289 131 8 chr4 125772287 125772409 -29857711 + B1F SINE Alu 13 149 0 6 1544 368 245 65 9 chr4 125772303 125772410 -29857710 + ID_B1 SINE B4 110 222 -2 6 1544 369 38 94 0 chr4 125772439 125772492 -29857628 + B1_Mus2 SINE Alu 2 59 -88 6 1544 1169 57 0 0 chr4 125772492 125772632 -29857488 - B1_Mm SINE Alu -7 140 1 6 1544 1195 74 0 0 chr4 125772666 125772814 -29857306 - B1_Mus1 SINE Alu 0 148 1 6 1544 279 0 0 0 chr4 125772818 125772849 -29857271 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1544 1184 62 0 0 chr4 125772849 125772994 -29857126 - B1_Mus2 SINE Alu -2 145 1 6 1544 260 225 157 128 chr4 125773018 125773120 -29857000 - B3A SINE B2 -92 106 2 6 1544 656 168 49 35 chr4 125773122 125773264 -29856856 - B1_Mur3 SINE Alu -3 146 3 6 1544 1713 26 0 0 chr4 125773280 125773473 -29856647 - B2_Mm1t SINE B2 0 193 1 6 1544 726 50 0 0 chr4 125773571 125773670 -29856450 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 6 1544 461 219 18 37 chr4 125774188 125774297 -29855823 - PB1D9 SINE Alu 0 120 14 6 1544 270 291 24 37 chr4 125774230 125774312 -29855808 - B4A SINE B4 -125 167 87 6 1544 356 317 57 14 chr4 125774312 125774453 -29855667 - B1_Mur1 SINE Alu -2 147 1 6 1544 223 133 65 22 chr4 125774510 125774556 -29855564 + MER5B DNA MER1_type 2 49 -129 7 1544 980 133 7 0 chr4 125774575 125774718 -29855402 + B1_Mur3 SINE Alu 1 144 -5 7 1544 662 233 0 20 chr4 125774737 125774886 -29855234 + B1_Mur1 SINE Alu 2 147 -2 7 1544 478 225 11 0 chr4 125776212 125776301 -29853819 + 4.5SRNA scRNA scRNA 3 92 -2 7 1544 602 209 108 8 chr4 125776301 125776431 -29853689 + B1_Mur4 SINE Alu 1 143 -7 7 1544 929 262 9 0 chr4 125776490 125776700 -29853420 - B3 SINE B2 -3 213 2 7 1544 512 212 169 0 chr4 125776735 125776853 -29853267 - B1_Mus2 SINE Alu -8 139 2 7 1544 238 41 0 0 chr4 125776883 125776932 -29853188 - L1Md_F3 LINE L1 0 6584 6536 7 1544 555 165 27 27 chr4 125776934 125777046 -29853074 - PB1D10 SINE Alu -1 116 5 7 1544 510 103 0 0 chr4 125777233 125777311 -29852809 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1544 227 312 157 26 chr4 125777389 125777504 -29852616 - MamGypLTR1c LTR Gypsy -602 201 72 7 1544 549 177 75 110 chr4 125778107 125778253 -29851867 + B1_Mur2 SINE Alu 1 141 -8 7 1544 251 28 0 27 chr4 125778610 125778647 -29851473 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1544 1104 91 0 0 chr4 125778647 125778783 -29851337 - B1_Mus1 SINE Alu -11 137 2 7 1544 518 274 156 10 chr4 125778787 125778979 -29851141 - ID_B1 SINE B4 -2 222 3 7 1544 399 263 66 60 chr4 125779040 125779206 -29850914 + ID_B1 SINE B4 56 222 -2 7 1544 286 299 15 5 chr4 125779210 125779309 -29850811 + ID4_ SINE ID 6 104 -48 7 1544 198 394 14 43 chr4 125780017 125780155 -29849965 + MIRb SINE MIR 13 146 -122 7 1544 28 0 0 0 chr4 125781293 125781321 -29848799 + GC_rich Low_complexity Low_complexity 1 28 0 7 1544 252 0 0 0 chr4 125782335 125782363 -29847757 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 7 1544 306 341 49 60 chr4 125783338 125783522 -29846598 + MIRb SINE MIR 81 262 -6 7 1544 554 198 10 0 chr4 125783753 125783854 -29846266 + B1_Mur2 SINE Alu 38 139 -10 7 1544 223 222 0 0 chr4 125783908 125783953 -29846167 - PB1D7 SINE Alu -8 112 68 7 1544 399 151 55 0 chr4 125784602 125784675 -29845445 - B3 SINE B2 -139 77 1 7 1544 624 207 17 0 chr4 125784735 125784851 -29845269 - B3A SINE B2 -80 118 1 7 1544 336 296 46 9 chr4 125784934 125785043 -29845077 - B1F SINE Alu -3 146 34 7 1544 283 357 49 21 chr4 125785696 125785839 -29844281 - MIRb SINE MIR -93 175 29 7 1544 381 301 138 6 chr4 125786047 125786214 -29843906 + MIRb SINE MIR 46 234 -34 7 1544 806 147 0 8 chr4 125786661 125786791 -29843329 - B1_Mus1 SINE Alu -2 146 18 7 1544 625 232 193 0 chr4 125786813 125786994 -29843126 - ID_B1 SINE B4 -7 217 2 7 1544 278 299 13 0 chr4 125788759 125788836 -29841284 + ID4 SINE ID 5 82 -1 7 1544 1492 68 16 5 chr4 125788871 125789062 -29841058 + B2_Mm2 SINE B2 1 193 -2 7 1544 371 270 0 57 chr4 125789077 125789183 -29840937 + PB1D10 SINE Alu 2 101 -16 7 1544 317 272 101 39 chr4 125789343 125789502 -29840618 - MIRb SINE MIR -72 196 22 7 1544 1227 93 5 42 chr4 125789819 125790009 -29840111 + B2_Mm1t SINE B2 2 184 -9 7 1544 284 189 216 0 chr4 125790224 125790298 -29839822 - B1F1 SINE Alu -1 119 30 7 1544 379 197 95 0 chr4 125790345 125790442 -29839678 - B1F1 SINE Alu -8 112 7 7 1544 1215 61 0 0 chr4 125790899 125791047 -29839073 - B1_Mus1 SINE Alu 0 148 1 7 1544 605 165 91 0 chr4 125791789 125791910 -29838210 + B3A SINE B2 1 132 -66 7 1544 737 193 0 7 chr4 125792112 125792248 -29837872 - B1_Mur1 SINE Alu -6 143 9 7 1544 390 281 81 24 chr4 125792248 125792372 -29837748 - B1F SINE Alu -16 133 3 7 1544 546 99 0 0 chr4 125792386 125792477 -29837643 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 1544 309 307 0 109 chr4 125792482 125792610 -29837510 - ID_B1 SINE B4 -32 192 79 7 1544 362 250 0 0 chr4 125793539 125793615 -29836505 - B1_Mur1 SINE Alu -22 127 52 7 1544 183 321 162 56 chr4 125793668 125793866 -29836254 - MIRb SINE MIR -12 256 38 7 1544 217 116 0 44 chr4 125794208 125794234 -29835886 + T-rich Low_complexity Low_complexity 19 43 0 7 1544 1105 102 0 0 chr4 125794234 125794381 -29835739 - B1_Mus2 SINE Alu 0 147 1 7 1544 217 116 0 44 chr4 125794381 125794399 -29835721 + T-rich Low_complexity Low_complexity 1 18 0 7 1544 234 235 34 169 chr4 125794744 125794862 -29835258 + MT2B2 LTR ERVL 155 256 -328 7 1544 437 257 20 10 chr4 125794772 125794874 -29835246 + PB1 SINE Alu 23 125 -2 7 1544 866 173 37 21 chr4 125795028 125795217 -29834903 + URR1A DNA MER1_type 14 205 -21 7 1544 1249 48 0 0 chr4 125796812 125796958 -29833162 - B1_Mus2 SINE Alu 0 147 2 7 1544 207 0 0 0 chr4 125797083 125797106 -29833014 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1544 24 67 0 0 chr4 125797116 125797161 -29832959 + AT_rich Low_complexity Low_complexity 1 45 0 7 1544 315 290 85 71 chr4 125797523 125797634 -29832486 + B1F SINE Alu 2 121 -28 7 1544 879 167 250 0 chr4 125797634 125797814 -29832306 + URR1B DNA MER1_type 1 225 0 7 1544 315 290 85 71 chr4 125797814 125797843 -29832277 + B1F SINE Alu 122 144 -5 7 1544 606 145 87 16 chr4 125798444 125798570 -29831550 - B1_Mus1 SINE Alu 0 148 14 7 1544 344 246 120 23 chr4 125798457 125798590 -29831530 - B4 SINE B4 -71 221 76 7 1544 630 104 0 0 chr4 125799323 125799419 -29830701 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 7 1544 588 211 278 6 chr4 125799442 125799604 -29830516 + B3 SINE B2 1 206 -10 7 1544 921 184 0 0 chr4 125799618 125799765 -29830355 + B1_Mus1 SINE Alu 1 147 -1 7 1544 557 204 319 6 chr4 125799770 125799933 -29830187 + B3 SINE B2 2 215 -1 7 1544 22 0 0 0 chr4 125799997 125800019 -29830101 + AT_rich Low_complexity Low_complexity 1 22 0 7 1544 1391 100 16 0 chr4 125800026 125800216 -29829904 + B2_Mm2 SINE B2 2 194 -1 7 1544 1210 61 7 0 chr4 125800218 125800365 -29829755 + B1_Mus1 SINE Alu 1 148 0 7 1544 189 121 0 0 chr4 125800365 125800398 -29829722 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 7 1544 233 241 0 79 chr4 125800410 125800473 -29829647 + ID_B1 SINE B4 145 202 -22 7 1544 257 262 97 53 chr4 125801404 125801419 -29828701 - B4 SINE B4 -73 219 102 7 1544 493 141 41 61 chr4 125801419 125801517 -29828603 - PB1D9 SINE Alu -8 112 17 7 1544 194 0 39 0 chr4 125801526 125801552 -29828568 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1544 552 68 0 0 chr4 125801552 125801626 -29828494 - B1_Mur4 SINE Alu -9 141 68 7 1544 436 224 30 30 chr4 125802045 125802146 -29827974 - B1F1 SINE Alu -42 107 7 7 1544 1424 88 5 10 chr4 125802689 125802884 -29827236 - B2_Mm2 SINE B2 0 195 2 7 1544 218 230 15 28 chr4 125803502 125803597 -29826523 + MIR SINE MIR 82 172 -90 7 1544 185 274 95 14 chr4 125804233 125804307 -29825813 - MIRb SINE MIR -68 200 121 7 1544 327 116 68 33 chr4 125804404 125804509 -29825611 - B2_Mm2 SINE B2 -8 187 47 7 1544 1110 108 90 6 chr4 125804537 125804704 -29825416 - B2_Mm2 SINE B2 -14 181 1 7 1544 1068 114 6 33 chr4 125804714 125804725 -29825395 - B2_Mm1a SINE B2 -17 176 166 7 1544 645 14 0 0 chr4 125804725 125804799 -29825321 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 7 1544 269 51 0 25 chr4 125804808 125804848 -29825272 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1544 1068 114 6 33 chr4 125804848 125805007 -29825113 - B2_Mm1a SINE B2 -33 160 2 7 1544 1080 303 42 73 chr4 125805036 125805513 -29824607 - MT2A LTR ERVL -71 462 1 7 1544 518 202 164 25 chr4 125805577 125805699 -29824421 + B1_Mur1 SINE Alu 2 140 -9 7 1544 288 0 0 0 chr4 125805699 125805731 -29824389 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1544 320 268 35 63 chr4 125808358 125808476 -29821644 + PB1D10 SINE Alu 3 127 0 7 1544 219 69 0 0 chr4 125808480 125808509 -29821611 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1544 257 197 16 0 chr4 125808509 125808570 -29821550 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 7 1544 232 304 34 43 chr4 125809594 125809711 -29820409 - MIR3 SINE MIR -92 116 1 7 1544 23 0 0 0 chr4 125810372 125810395 -29819725 + AT_rich Low_complexity Low_complexity 1 23 0 7 1544 318 300 45 18 chr4 125810479 125810591 -29819529 + MIRb SINE MIR 34 148 -120 7 1544 272 270 95 0 chr4 125810931 125811005 -29819115 + ID4 SINE ID 2 82 -1 7 1544 343 207 72 12 chr4 125811789 125811872 -29818248 + B4A SINE B4 1 88 -204 7 1544 234 318 71 55 chr4 125812462 125812596 -29817524 - L2c LINE L2 -80 3307 3172 7 1544 1105 67 0 7 chr4 125812596 125812732 -29817388 + B1_Mus2 SINE Alu 1 135 -12 7 1544 234 318 71 55 chr4 125812732 125812780 -29817340 - L2c LINE L2 -216 3171 3122 7 1544 1025 63 21 0 chr4 125813014 125813156 -29816964 - B1_Mus1 SINE Alu 0 148 4 7 1544 1044 140 39 16 chr4 125813184 125813366 -29816754 - B2_Mm2 SINE B2 -7 188 3 7 1544 285 29 0 0 chr4 125813598 125813632 -29816488 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1544 468 0 0 0 chr4 125814651 125814703 -29815417 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 7 1544 1233 29 0 0 chr4 125814704 125814843 -29815277 - B1_Mus1 SINE Alu -6 142 4 7 1544 259 196 204 11 chr4 125815542 125815635 -29814485 - MIRb SINE MIR -138 130 20 7 1544 372 151 0 52 chr4 125817523 125817600 -29812520 + MIR SINE MIR 73 145 -117 7 1544 265 21 61 41 chr4 125818123 125818172 -29811948 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 8 1544 819 81 0 31 chr4 125818939 125819067 -29811053 - B1_Mus2 SINE Alu 0 147 24 8 1544 236 277 211 29 chr4 125819069 125819173 -29810947 - B3 SINE B2 0 216 94 8 1544 232 211 0 27 chr4 125819405 125819478 -29810642 + CT-rich Low_complexity Low_complexity 1 71 0 8 1544 347 274 128 0 chr4 125819608 125819710 -29810410 + B1F2 SINE Alu 4 118 -31 8 1544 464 250 108 0 chr4 125819719 125819839 -29810281 + ID_B1 SINE B4 32 164 -60 8 1544 222 261 116 32 chr4 125819772 125819867 -29810253 + PB1D10 SINE Alu 15 117 0 8 1544 316 246 178 32 chr4 125819938 125820078 -29810042 + B3A SINE B2 48 208 -8 8 1544 680 229 100 0 chr4 125820080 125820250 -29809870 + B3 SINE B2 2 188 -28 8 1544 1062 62 86 6 chr4 125820278 125820303 -29809817 - B2_Mm2 SINE B2 -7 188 162 8 1544 243 0 0 0 chr4 125820303 125820330 -29809790 + (GA)n Simple_repeat Simple_repeat 2 28 0 8 1544 1062 62 86 6 chr4 125820330 125820466 -29809654 - B2_Mm2 SINE B2 -34 161 14 8 1544 336 65 0 16 chr4 125820473 125820536 -29809584 + B2_Mm2 SINE B2 132 193 -2 8 1544 219 325 36 0 chr4 125820584 125820667 -29809453 + RSINE1 SINE B4 77 162 -3 8 1544 283 291 108 9 chr4 125820695 125820806 -29809314 + PB1 SINE Alu 4 125 -2 8 1544 920 122 0 0 chr4 125820815 125820954 -29809166 + B2_Mm2 SINE B2 1 139 -56 8 1544 459 38 0 238 chr4 125821078 125821183 -29808937 - ORR1A4 LTR MaLR 0 329 250 8 1544 632 40 192 0 chr4 125821184 125821283 -29808837 - ORR1A4 LTR MaLR -211 118 1 8 1544 338 269 354 85 chr4 125821550 125821747 -29808373 + MER20B DNA MER1_type 67 317 -466 8 1544 244 25 75 0 chr4 125821747 125821787 -29808333 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1544 1150 65 0 0 chr4 125821787 125821925 -29808195 - B1_Mus1 SINE Alu -10 138 1 8 1544 799 148 48 34 chr4 125821927 125822074 -29808046 - B1_Mur3 SINE Alu 0 149 1 8 1544 338 271 19 106 chr4 125822074 125822146 -29807974 + MER20B DNA MER1_type 318 386 -397 8 1544 265 266 138 19 chr4 125822392 125822516 -29807604 + MIRb SINE MIR 28 175 -93 8 1544 770 138 6 76 chr4 125823914 125824071 -29806049 - B1_Mm SINE Alu 0 147 2 8 1544 240 379 70 40 chr4 125824072 125824399 -29805721 + L2 LINE L2 2744 3080 -339 8 1544 207 0 0 0 chr4 125824533 125824556 -29805564 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1544 392 55 0 0 chr4 125824556 125824611 -29805509 - B1_Mm SINE Alu 0 147 93 8 1544 265 264 97 55 chr4 125825337 125825519 -29804601 + MIR SINE MIR 4 213 -55 8 1544 245 233 13 40 chr4 125825652 125825728 -29804392 + C-rich Low_complexity Low_complexity 4 77 0 8 1545 666 146 110 44 chr4 125829961 125830097 -29800023 - B1_Mur2 SINE Alu -3 146 2 8 1545 379 279 0 0 chr4 125830481 125830567 -29799553 + B3 SINE B2 2 87 -129 8 1545 321 262 46 90 chr4 125830598 125830778 -29799342 + B3A SINE B2 36 213 -3 8 1545 634 208 56 0 chr4 125830806 125830931 -29799189 - B1_Mur2 SINE Alu -13 136 5 8 1545 396 231 0 0 chr4 125830947 125831051 -29799069 + (TA)n Simple_repeat Simple_repeat 2 105 0 8 1545 928 96 0 14 chr4 125831141 125831279 -29798841 - B1_Mur4 SINE Alu -5 145 10 8 1545 407 291 29 87 chr4 125831279 125831312 -29798808 - B4A SINE B4 -68 222 62 8 1545 422 256 0 69 chr4 125831310 125831440 -29798680 - RSINE1 SINE B4 0 165 45 8 1545 301 287 32 0 chr4 125831493 125831587 -29798533 + PB1D9 SINE Alu 19 115 -5 8 1545 197 355 98 36 chr4 125831763 125831956 -29798164 + MIRb SINE MIR 58 262 -6 8 1545 1223 172 20 0 chr4 125832065 125832268 -29797852 + B3 SINE B2 1 207 -9 8 1545 708 165 16 0 chr4 125832320 125832447 -29797673 + B1_Mur2 SINE Alu 21 149 0 8 1545 567 291 117 55 chr4 125832480 125832771 -29797349 - MTE2a LTR MaLR -2 377 69 8 1545 284 259 112 19 chr4 125832924 125833085 -29797035 + L1MEd LINE L1 580 755 -5364 8 1545 241 187 20 61 chr4 125833139 125833287 -29796833 + (CAGAGA)n Simple_repeat Simple_repeat 1 142 0 8 1545 961 170 11 43 chr4 125833941 125834125 -29795995 + B3 SINE B2 1 178 -38 8 1545 804 99 0 8 chr4 125834131 125834253 -29795867 + B1_Mur2 SINE Alu 27 147 -2 8 1545 203 170 21 0 chr4 125834316 125834363 -29795757 + (CACCAT)n Simple_repeat Simple_repeat 5 52 0 8 1545 227 263 0 62 chr4 125834363 125834444 -29795676 - ID4_ SINE ID -4 79 4 8 1545 311 345 82 35 chr4 125834488 125834659 -29795461 + L1M4 LINE L1 5353 5531 -653 8 1545 211 160 39 39 chr4 125834659 125834711 -29795409 + PB1D10 SINE Alu 34 85 -32 8 1545 521 109 29 115 chr4 125834707 125834811 -29795309 + PB1D9 SINE Alu 21 115 -5 8 1545 701 215 40 7 chr4 125834872 125835022 -29795098 + B3 SINE B2 2 156 -60 8 1545 2157 153 26 29 chr4 125835077 125835493 -29794627 + RLTR42-int LTR ERVK 3748 4162 -1360 8 1545 738 235 60 0 chr4 125835518 125835684 -29794436 + B3 SINE B2 39 214 -2 8 1545 1229 154 250 0 chr4 125835699 125835983 -29794137 + RLTR42-int LTR ERVK 4189 4543 -979 8 1545 464 246 88 15 chr4 125836065 125836201 -29793919 + RLTR42-int LTR ERVK 4686 4831 -691 8 1545 279 0 0 0 chr4 125836230 125836261 -29793859 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1545 1164 89 6 0 chr4 125836261 125836419 -29793701 - B2_Mm1a SINE B2 -33 160 2 8 1545 2462 193 43 58 chr4 125836419 125837019 -29793101 + RLTR42-int LTR ERVK 4857 5447 -75 8 1545 383 170 100 91 chr4 125837019 125837054 -29793066 + RLTR42 LTR ERVK 129 167 -72 8 1545 782 178 239 11 chr4 125837054 125837230 -29792890 + B3 SINE B2 1 216 0 8 1545 383 170 100 91 chr4 125837230 125837304 -29792816 + RLTR42 LTR ERVK 168 239 0 8 1545 263 268 0 40 chr4 125837387 125837461 -29792659 + tRNA-Ala-GCA tRNA tRNA 5 75 0 8 1545 324 0 0 0 chr4 125837857 125837893 -29792227 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1545 821 120 68 0 chr4 125837977 125838110 -29792010 - B1_Mus2 SINE Alu -1 146 5 8 1545 549 218 6 207 chr4 125838334 125838513 -29791607 - B1_Mur3 SINE Alu -6 143 1 8 1545 233 211 69 17 chr4 125839074 125839132 -29790988 + ZP3AR Satellite Satellite 28 88 -124 8 1545 598 66 0 0 chr4 125839085 125839161 -29790959 + BC1_Mm scRNA scRNA 1 76 -76 8 1545 235 261 79 11 chr4 125839161 125839174 -29790946 + RSINE1 SINE B4 2 96 -69 8 1545 29 47 0 0 chr4 125841740 125841783 -29788337 + AT_rich Low_complexity Low_complexity 1 43 0 8 1545 322 228 9 9 chr4 125844917 125844931 -29785189 + polypurine Low_complexity Low_complexity 2 15 0 8 1545 1071 37 52 0 chr4 125844931 125845065 -29785055 + B1_Mus2 SINE Alu 1 141 -6 8 1545 322 228 9 9 chr4 125845065 125845165 -29784955 + GA-rich Low_complexity Low_complexity 16 115 0 8 1545 820 80 0 0 chr4 125845658 125845771 -29784349 - B1_Mus1 SINE Alu 0 148 36 8 1545 604 287 6 13 chr4 125846102 125846261 -29783859 + B3 SINE B2 59 216 0 8 1545 1879 156 81 29 chr4 125846286 125846668 -29783452 + MTB_Mm LTR MaLR 5 406 -1 8 1545 407 184 151 28 chr4 125846828 125846934 -29783186 + PB1D9 SINE Alu 1 119 -1 8 1545 703 178 7 44 chr4 125847174 125847309 -29782811 + B3 SINE B2 1 130 -86 8 1545 600 53 0 0 chr4 125847344 125847420 -29782700 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 8 1545 1129 79 0 0 chr4 125847420 125847559 -29782561 + B1_Mus1 SINE Alu 2 140 -8 8 1545 246 320 75 28 chr4 125847835 125847941 -29782179 + ID_B1 SINE B4 93 203 -21 8 1545 1263 48 0 0 chr4 125848229 125848376 -29781744 + B1_Mus1 SINE Alu 2 148 0 8 1545 283 241 241 0 chr4 125848779 125848866 -29781254 + B1F2 SINE Alu 23 130 -19 8 1545 462 238 30 67 chr4 125851005 125851140 -29778980 + B1_Mus2 SINE Alu 18 147 0 8 1545 280 235 35 105 chr4 125851263 125851377 -29778743 - ID_B1 SINE B4 -115 109 4 8 1545 529 194 143 30 chr4 125851389 125851522 -29778598 - B1_Mur2 SINE Alu 0 149 2 8 1545 1226 77 64 23 chr4 125851876 125852049 -29778071 - B2_Mm2 SINE B2 -14 181 2 8 1545 1179 55 7 0 chr4 125852196 125852342 -29777778 + B1_Mus1 SINE Alu 2 148 0 8 1545 350 277 160 13 chr4 125853063 125853213 -29776907 + B3A SINE B2 27 198 0 8 1545 361 278 0 49 chr4 125853684 125853786 -29776334 - PB1D10 SINE Alu -8 109 13 8 1545 432 319 6 89 chr4 125853707 125853886 -29776234 - ID_B1 SINE B4 -54 170 7 8 1545 293 178 0 0 chr4 125853936 125853981 -29776139 - RSINE1 SINE B4 -37 128 84 8 1545 888 140 21 7 chr4 125854066 125854210 -29775910 - B1_Mus1 SINE Alu -1 147 2 8 1545 538 270 175 0 chr4 125854427 125854553 -29775567 + RSINE1 SINE B4 3 150 -15 8 1545 224 253 0 37 chr4 125855713 125855795 -29774325 + CT-rich Low_complexity Low_complexity 4 82 0 8 1545 2144 152 79 35 chr4 125858763 125859166 -29770954 + MTC LTR MaLR 1 421 0 8 1545 417 250 50 0 chr4 125859201 125859281 -29770839 + RSINE1 SINE B4 72 155 -10 8 1545 544 211 37 0 chr4 125859375 125859484 -29770636 - B1_Mur2 SINE Alu -16 133 21 8 1545 258 178 61 61 chr4 125859654 125859720 -29770400 + MT2B2 LTR ERVL 152 217 -367 8 1545 506 266 28 14 chr4 125859665 125859806 -29770314 + ID_B1 SINE B4 82 224 0 8 1545 1160 62 0 0 chr4 125859857 125860003 -29770117 + B1_Mus2 SINE Alu 2 147 0 8 1545 429 259 65 29 chr4 125860022 125860161 -29769959 + B3 SINE B2 27 170 -46 8 1545 225 327 66 19 chr4 125860146 125860252 -29769868 + PB1D10 SINE Alu 7 117 0 8 1545 548 194 43 26 chr4 125860416 125860542 -29769578 - PB1D9 SINE Alu -10 140 13 8 1545 323 184 644 0 chr4 125860727 125860853 -29769267 + B3 SINE B2 10 216 0 8 1545 227 128 0 0 chr4 125860931 125860970 -29769150 + Tigger7 DNA MER2_type 67 105 -2386 8 1545 591 264 81 7 chr4 125860984 125861133 -29768987 - RSINE1 SINE B4 -2 163 4 8 1545 486 253 92 33 chr4 125861149 125861333 -29768787 + Tigger7 DNA MER2_type 2265 2459 -32 8 1545 237 261 124 11 chr4 125862962 125863051 -29767069 + PB1D9 SINE Alu 22 120 0 9 1545 577 51 0 25 chr4 125863978 125864059 -29766061 + B1_Mm SINE Alu 66 144 -3 9 1545 241 212 28 83 chr4 125864071 125864143 -29765977 + B3A SINE B2 27 94 -104 9 1545 223 184 0 0 chr4 125864121 125864159 -29765961 + B1_Mur1 SINE Alu 100 137 -12 9 1545 509 294 46 51 chr4 125864313 125864510 -29765610 - B3A SINE B2 -2 196 1 9 1545 571 282 45 56 chr4 125864718 125864931 -29765189 + ID_B1 SINE B4 11 225 -67 9 1545 375 200 71 50 chr4 125865405 125865541 -29764579 + PB1D9 SINE Alu 8 148 -1 9 1545 439 237 65 34 chr4 125865727 125865884 -29764236 + MTEb LTR MaLR 151 332 -47 9 1545 1159 51 0 0 chr4 125865925 125866063 -29764057 + B1_Mus2 SINE Alu 1 138 -9 9 1545 200 35 35 0 chr4 125866063 125866092 -29764028 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1545 849 66 182 0 chr4 125866110 125866247 -29763873 + B2_Mm2 SINE B2 34 195 0 9 1545 266 293 36 12 chr4 125866371 125866454 -29763666 + PB1D7 SINE Alu 11 95 -55 9 1545 341 253 94 76 chr4 125866410 125866476 -29763644 + MT2B LTR ERVL 90 158 -443 9 1545 506 229 122 0 chr4 125866476 125866607 -29763513 + B1_Mur1 SINE Alu 1 147 -1 9 1545 521 274 92 27 chr4 125866627 125866811 -29763309 + B3A SINE B2 3 198 0 9 1545 473 93 27 0 chr4 125867026 125867101 -29763019 - B1_Mus2 SINE Alu 0 147 71 9 1545 228 149 0 0 chr4 125867453 125867500 -29762620 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1545 934 214 47 28 chr4 125867519 125867731 -29762389 - B3 SINE B2 0 216 1 9 1545 706 209 43 0 chr4 125867977 125868116 -29762004 + B1_Mur4 SINE Alu 6 150 0 9 1545 970 82 89 0 chr4 125868119 125868254 -29761866 + B1_Mus1 SINE Alu 2 148 0 9 1545 1259 40 0 0 chr4 125868731 125868879 -29761241 - B1_Mus1 SINE Alu 0 148 1 9 1545 212 276 81 147 chr4 125868914 125869050 -29761070 + FAM SINE Alu 139 265 -46 9 1545 1651 212 39 39 chr4 125869095 125869458 -29760662 + ORR1D1 LTR MaLR 1 363 -11 9 1545 575 162 109 51 chr4 125869484 125869621 -29760499 - B1_Mus2 SINE Alu -1 146 2 9 1545 270 281 45 30 chr4 125869621 125869687 -29760433 - PB1D10 SINE Alu -50 67 1 9 1545 404 287 0 34 chr4 125869758 125869877 -29760243 - PB1D10 SINE Alu 0 117 3 9 1545 644 177 321 25 chr4 125870149 125870311 -29759809 - B3 SINE B2 -6 210 1 9 1545 201 211 0 0 chr4 125870405 125870462 -29759658 + A-rich Low_complexity Low_complexity 1 57 0 9 1545 258 275 73 24 chr4 125870500 125870582 -29759538 + PB1D10 SINE Alu 27 112 -5 9 1545 343 252 52 47 chr4 125870708 125870803 -29759317 - B1F SINE Alu -27 93 9 9 1545 670 212 36 7 chr4 125870963 125871101 -29759019 + B1_Mur1 SINE Alu 6 147 -2 9 1545 373 316 139 8 chr4 125871116 125871374 -29758746 + B4A SINE B4 1 292 0 9 1545 259 142 32 0 chr4 125871459 125871513 -29758607 - B1_Mur1 SINE Alu -8 141 53 9 1545 417 222 22 0 chr4 125871793 125871883 -29758237 + B1_Mm SINE Alu 56 147 0 9 1545 1154 48 14 0 chr4 125871980 125872125 -29757995 + B1_Mm SINE Alu 1 147 0 9 1545 243 301 103 68 chr4 125872137 125872283 -29757837 + ID_B1 SINE B4 6 156 -68 9 1545 410 165 0 141 chr4 125872285 125872384 -29757736 + B3A SINE B2 3 87 -111 9 1545 1004 46 15 30 chr4 125872422 125872556 -29757564 + B1_Mus1 SINE Alu 2 133 -15 9 1545 440 177 40 40 chr4 125872600 125872700 -29757420 + MT2A LTR ERVL 3 102 -431 9 1545 1232 27 7 0 chr4 125872709 125872855 -29757265 - B1_Mm SINE Alu 0 147 1 9 1545 509 174 0 14 chr4 125872912 125873006 -29757114 - B3 SINE B2 -102 93 2 9 1545 607 200 38 8 chr4 125873132 125873263 -29756857 - B1_Mur2 SINE Alu -13 136 2 9 1545 277 225 125 0 chr4 125873637 125873717 -29756403 + PB1D9 SINE Alu 24 113 -7 9 1545 443 323 71 0 chr4 125873741 125873868 -29756252 - B3A SINE B2 -62 136 1 9 1545 472 304 0 23 chr4 125873869 125873997 -29756123 - B1_Mus2 SINE Alu -5 142 18 9 1545 1166 49 28 0 chr4 125874150 125874294 -29755826 + B1_Mus1 SINE Alu 1 148 0 9 1545 1386 73 17 0 chr4 125874557 125874735 -29755385 - B2_Mm2 SINE B2 -14 181 1 9 1545 23 0 0 0 chr4 125874741 125874764 -29755356 + AT_rich Low_complexity Low_complexity 1 23 0 9 1545 459 148 205 39 chr4 125874963 125875090 -29755030 + B1_Mur4 SINE Alu 1 148 -2 9 1545 321 193 88 88 chr4 125875658 125875749 -29754371 + B1_Mur4 SINE Alu 21 141 -9 9 1545 1090 43 57 7 chr4 125876592 125876732 -29753388 + B1_Mm SINE Alu 1 147 0 9 1545 404 248 168 0 chr4 125877427 125877528 -29752592 - B1_Mus1 SINE Alu 0 148 31 9 1545 284 226 31 134 chr4 125877474 125877571 -29752549 - MT2B LTR ERVL -361 240 154 9 1545 195 114 0 0 chr4 125877954 125877989 -29752131 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 9 1545 526 209 29 0 chr4 125878013 125878118 -29752002 - PB1D9 SINE Alu -11 109 2 9 1545 308 178 133 27 chr4 125878191 125878266 -29751854 + PB1D9 SINE Alu 38 120 0 9 1545 303 217 238 16 chr4 125878283 125878405 -29751715 + B1F2 SINE Alu 1 149 0 9 1545 417 167 106 43 chr4 125878312 125878406 -29751714 + ID_B1 SINE B4 124 223 -1 9 1545 198 0 0 0 chr4 125878408 125878430 -29751690 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1545 541 44 0 14 chr4 125878454 125878523 -29751597 - U6 snRNA snRNA -37 70 3 9 1545 191 174 196 0 chr4 125880357 125880403 -29749717 + MIRc SINE MIR 138 192 -76 9 1545 239 115 225 72 chr4 125880609 125880680 -29749440 - B1_Mus2 SINE Alu -9 138 61 9 1545 482 282 0 90 chr4 125880802 125880958 -29749162 - B1F SINE Alu 0 149 8 9 1545 1744 200 119 65 chr4 125881113 125881710 -29748410 - RMER21A LTR ERV1 -75 872 1 9 1545 191 211 0 50 chr4 125881729 125881769 -29748351 + L2c LINE L2 3269 3306 -81 9 1545 387 216 37 56 chr4 125881770 125881878 -29748242 + RLTR11B LTR ERVK 1 106 -347 9 1545 209 151 19 0 chr4 125882519 125882572 -29747548 + (TTGG)n Simple_repeat Simple_repeat 1 54 0 9 1545 686 124 18 0 chr4 125882577 125882690 -29747430 - B1_Mus1 SINE Alu 0 148 34 9 1545 708 224 20 39 chr4 125882783 125882936 -29747184 - RSINE1 SINE B4 -14 151 2 9 1545 497 207 233 40 chr4 125882967 125883143 -29746977 - B3 SINE B2 -6 210 1 9 1545 570 284 85 33 chr4 125883170 125883277 -29746843 + ID_B1 SINE B4 3 114 -110 9 1545 2287 167 20 64 chr4 125883277 125883326 -29746794 + RMER4A LTR ERVK 1 47 -419 9 1545 1048 88 0 63 chr4 125883326 125883484 -29746636 + B1_Mus1 SINE Alu 1 148 0 9 1545 2287 167 20 64 chr4 125883484 125883921 -29746199 + RMER4A LTR ERVK 48 466 0 9 1545 570 284 85 33 chr4 125883921 125884024 -29746096 + ID_B1 SINE B4 115 224 0 9 1545 244 260 178 0 chr4 125884037 125884110 -29746010 - PB1D10 SINE Alu -17 100 15 9 1545 932 244 42 136 chr4 125884154 125884189 -29745931 - MTC LTR MaLR -9 412 381 9 1545 1233 41 7 0 chr4 125884189 125884336 -29745784 + B1_Mus1 SINE Alu 1 148 0 9 1545 932 244 42 136 chr4 125884336 125884661 -29745459 - MTC LTR MaLR -41 380 86 9 1545 1191 76 81 11 chr4 125884750 125884924 -29745196 - B2_Mm2 SINE B2 -8 187 2 9 1545 1177 75 0 0 chr4 125884965 125885112 -29745008 - B1_Mus2 SINE Alu 0 147 1 9 1545 1447 69 16 0 chr4 125885222 125885411 -29744709 - B2_Mm1a SINE B2 -1 192 1 9 1545 25 0 0 0 chr4 125885417 125885442 -29744678 + AT_rich Low_complexity Low_complexity 1 25 0 9 1545 1434 69 32 5 chr4 125885600 125885789 -29744331 + B2_Mm2 SINE B2 2 195 0 9 1545 324 120 0 0 chr4 125885830 125885880 -29744240 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 9 1545 1179 68 0 0 chr4 125885887 125886033 -29744087 - B1_Mus2 SINE Alu 0 147 2 9 1545 935 122 0 0 chr4 125886033 125886164 -29743956 + B1_Mur3 SINE Alu 11 141 -8 9 1545 691 36 0 0 chr4 125886173 125886257 -29743863 + B1_Mus2 SINE Alu 64 147 0 9 1545 390 129 0 0 chr4 125886279 125886341 -29743779 + (TAG)n Simple_repeat Simple_repeat 1 62 0 9 1545 254 326 50 10 chr4 125886427 125886526 -29743594 + MER58B DNA MER1_type 16 118 -223 9 1545 434 219 29 66 chr4 125886537 125886674 -29743446 + B4 SINE B4 3 134 -158 9 1545 353 320 6 109 chr4 125886674 125886702 -29743418 + B3A SINE B2 3 150 -48 9 1545 266 243 80 19 chr4 125886755 125886864 -29743256 + RSINE1 SINE B4 11 130 -162 9 1545 1056 114 44 0 chr4 125886911 125887069 -29743051 - B2_Mm2 SINE B2 -4 191 27 9 1545 232 41 107 27 chr4 125887079 125887154 -29742966 + (GTTTG)n Simple_repeat Simple_repeat 5 85 0 9 1545 1191 57 0 0 chr4 125887156 125887297 -29742823 - B1_Mus1 SINE Alu -7 141 1 9 1545 257 125 0 0 chr4 125887297 125887337 -29742783 - B3 SINE B2 -174 42 3 9 1545 571 278 20 13 chr4 125887366 125887519 -29742601 - B3 SINE B2 -60 156 3 9 1545 1404 90 11 0 chr4 125887553 125887741 -29742379 + B2_Mm1a SINE B2 2 191 -2 9 1545 586 192 0 88 chr4 125887753 125887867 -29742253 + B1_Mus2 SINE Alu 2 105 -42 9 1545 316 202 93 23 chr4 125887791 125887877 -29742243 + RLTR25B LTR ERVK 431 522 -506 9 1545 1808 220 69 29 chr4 125887901 125888250 -29741870 + RLTR20C LTR ERVK 68 428 -106 9 1545 423 0 0 0 chr4 125888250 125888297 -29741823 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1545 1808 220 69 29 chr4 125888297 125888396 -29741724 + RLTR20C LTR ERVK 429 533 -1 9 1545 213 186 0 65 chr4 125888396 125888442 -29741678 + B1_Mus2 SINE Alu 100 142 -5 9 1545 469 326 104 6 chr4 125888473 125888646 -29741474 + B3A SINE B2 7 196 -2 1 1545 947 55 288 0 chr4 125888685 125888831 -29741289 - B2_Mm2 SINE B2 -7 188 1 1 1545 597 184 24 15 chr4 125888868 125889000 -29741120 + B1_Mm SINE Alu 13 145 -2 1 1545 326 321 126 30 chr4 125889003 125889138 -29740982 + MER58B DNA MER1_type 194 341 0 9 1545 318 50 0 0 chr4 125889199 125889239 -29740881 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1545 262 302 38 108 chr4 125889583 125889727 -29740393 - RMER5 LTR ERV1 -9 525 397 1 1545 1779 10 0 0 chr4 125889727 125889920 -29740200 - B2_Mm1t SINE B2 0 193 1 1 1545 262 302 38 108 chr4 125889920 125889987 -29740133 - RMER5 LTR ERV1 -138 396 329 1 1545 913 142 0 7 chr4 125889990 125890139 -29739981 + B1_Mur4 SINE Alu 3 150 0 1 1545 1060 257 48 26 chr4 125890121 125890473 -29739647 - RMER5 LTR ERV1 -151 383 24 1 1545 316 174 188 0 chr4 125890638 125890707 -29739413 + B3 SINE B2 134 215 -1 1 1545 1076 206 14 9 chr4 125890729 125890940 -29739180 + B3 SINE B2 5 216 0 1 1545 481 178 250 17 chr4 125890955 125891075 -29739045 + B1_Mus1 SINE Alu 1 148 0 1 1545 282 345 18 18 chr4 125891240 125891352 -29738768 - MIRb SINE MIR -106 162 51 1 1545 1218 75 0 0 chr4 125891441 125891588 -29738532 - B1_Mus2 SINE Alu 0 147 1 1 1545 279 0 0 0 chr4 125891798 125891829 -29738291 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1545 422 308 30 15 chr4 125891850 125891985 -29738135 - B3 SINE B2 -37 179 43 1 1545 537 171 9 54 chr4 125892089 125892159 -29737961 - PB1D10 SINE Alu -9 108 42 1 1545 2023 111 32 102 chr4 125892159 125892349 -29737771 + RMER17C LTR ERVK 1 179 -231 1 1545 546 0 13 26 chr4 125892349 125892425 -29737695 + (TTCTC)n Simple_repeat Simple_repeat 5 79 0 1 1545 2023 111 32 102 chr4 125892425 125892675 -29737445 + RMER17C LTR ERVK 180 409 -1 1 1545 537 171 9 54 chr4 125892675 125892715 -29737405 - PB1D10 SINE Alu -76 41 3 1 1545 299 350 25 8 chr4 125892961 125893082 -29737038 - ID_B1 SINE B4 -18 206 84 1 1545 358 302 0 0 chr4 125893134 125893220 -29736900 + B1F2 SINE Alu 6 91 -58 1 1545 405 0 0 0 chr4 125893225 125893270 -29736850 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1 1545 1203 40 0 0 chr4 125893270 125893422 -29736698 - B2_Mm2 SINE B2 -43 152 1 1 1545 276 182 18 0 chr4 125893427 125893482 -29736638 + PB1D9 SINE Alu 63 118 -2 1 1545 301 200 30 158 chr4 125893609 125893628 -29736492 + MT2B LTR ERVL 152 239 -362 1 1545 440 207 0 0 chr4 125893628 125893710 -29736410 + B1_Mus1 SINE Alu 2 83 -65 1 1545 593 169 83 25 chr4 125893713 125893834 -29736286 + B1_Mur4 SINE Alu 23 150 0 1 1545 1094 79 0 0 chr4 125893837 125893977 -29736143 + B1_Mus1 SINE Alu 1 140 -8 1 1545 186 43 0 0 chr4 125893977 125894000 -29736120 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1545 369 0 0 0 chr4 125894003 125894044 -29736076 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1545 327 283 20 20 chr4 125894052 125894153 -29735967 - RSINE1 SINE B4 -61 104 4 1 1545 22 0 0 0 chr4 125894160 125894182 -29735938 + AT_rich Low_complexity Low_complexity 1 22 0 1 1545 438 257 37 0 chr4 125894185 125894294 -29735826 + PB1D9 SINE Alu 3 115 -5 1 1545 1215 74 0 0 chr4 125894538 125894687 -29735433 - B1_Mur4 SINE Alu 0 150 2 1 1545 224 284 98 12 chr4 125894687 125894769 -29735351 - B4 SINE B4 -198 94 6 1 1545 533 61 0 12 chr4 125895363 125895446 -29734674 + L1Md_F2 LINE L1 6501 6582 0 1 1545 315 0 0 0 chr4 125895559 125895594 -29734526 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1545 377 295 9 9 chr4 125895659 125895772 -29734348 - B4A SINE B4 -179 113 1 1 1545 894 164 7 33 chr4 125895923 125896074 -29734046 - B1F2 SINE Alu -2 147 1 1 1545 424 307 29 21 chr4 125896134 125896274 -29733846 + RSINE1 SINE B4 3 143 -22 1 1545 939 68 8 8 chr4 125896309 125896442 -29733678 - B1_Mus1 SINE Alu -10 138 6 1 1545 758 113 52 10 chr4 125896513 125896647 -29733473 - B1_Mur4 SINE Alu -1 149 12 1 1545 1354 91 16 5 chr4 125896647 125896834 -29733286 - B2_Mm2 SINE B2 -6 189 1 1 1545 390 42 0 0 chr4 125896889 125896937 -29733183 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 1 1545 845 129 86 0 chr4 125896938 125897077 -29733043 - B2_Mm2 SINE B2 -41 154 4 1 1545 1225 48 7 0 chr4 125897110 125897255 -29732865 - B1_Mus1 SINE Alu -1 147 2 1 1545 967 155 0 0 chr4 125897265 125897407 -29732713 - B1_Mur3 SINE Alu -7 142 1 1 1545 872 310 109 47 chr4 125897416 125898011 -29732109 + L1MB3 LINE L1 5309 5940 -243 1 1545 238 375 28 28 chr4 125898013 125898120 -29732000 + PB1D10 SINE Alu 3 109 -8 1 1545 627 225 8 0 chr4 125898131 125898251 -29731869 + B1_Mus2 SINE Alu 19 139 -8 1 1545 534 166 9 2 chr4 125898343 125898460 -29731660 - B1_Mur4 SINE Alu 0 120 1 1 1545 307 312 221 22 chr4 125898467 125898637 -29731483 - ID_B1 SINE B4 -20 204 1 1 1545 1167 78 0 0 chr4 125898788 125898930 -29731190 + B1_Mus1 SINE Alu 1 142 -6 1 1545 186 43 0 0 chr4 125898932 125898955 -29731165 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1545 925 185 50 27 chr4 125898955 125899177 -29730943 + RLTR28 LTR ERVL 284 510 -14 1 1545 360 269 0 0 chr4 125899194 125899272 -29730848 + ID_B1 SINE B4 134 211 -13 1 1545 189 0 0 0 chr4 125899273 125899294 -29730826 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1545 22 0 0 0 chr4 125899322 125899344 -29730776 + AT_rich Low_complexity Low_complexity 1 22 0 1 1545 499 257 0 27 chr4 125899353 125899465 -29730655 + PB1D10 SINE Alu 1 109 -8 1 1545 180 0 0 0 chr4 125899567 125899587 -29730533 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1545 479 61 0 0 chr4 125899598 125899664 -29730456 + B1_Mus2 SINE Alu 82 147 0 1 1545 868 90 98 0 chr4 125899742 125899875 -29730245 - B1_Mus1 SINE Alu -2 146 1 1 1545 348 329 7 42 chr4 125900037 125900180 -29729940 + RSINE1 SINE B4 27 164 -1 1 1545 1298 111 16 0 chr4 125900185 125900374 -29729746 + B2_Mm1t SINE B2 1 192 -1 1 1545 198 160 0 0 chr4 125900410 125900460 -29729660 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1 1545 632 167 173 8 chr4 125900460 125900587 -29729533 - B1_Mur2 SINE Alu -1 148 1 1 1545 1196 75 0 0 chr4 125900616 125900763 -29729357 + B1_Mus2 SINE Alu 1 147 0 1 1545 252 250 69 0 chr4 125900797 125900869 -29729251 + ID4_ SINE ID 7 83 0 1 1545 391 176 352 0 chr4 125900951 125901076 -29729044 - B3 SINE B2 -8 208 40 1 1545 777 213 0 0 chr4 125901109 125901245 -29728875 - B1_Mus2 SINE Alu -10 137 2 1 1545 418 301 104 21 chr4 125901505 125901698 -29728422 + B4A SINE B4 7 215 -77 1 1545 279 0 0 0 chr4 125901760 125901791 -29728329 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1545 22 88 0 0 chr4 125901818 125901875 -29728245 + AT_rich Low_complexity Low_complexity 1 57 0 1 1545 554 287 128 9 chr4 125901875 125901957 -29728163 - ID_B1 SINE B4 -90 202 100 1 1545 360 0 0 0 chr4 125901957 125901997 -29728123 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1545 554 254 85 0 chr4 125901997 125902087 -29728033 - ID_B1 SINE B4 -119 105 5 1 1545 882 102 0 0 chr4 125902118 125902246 -29727874 + B2_Mm2 SINE B2 2 129 -66 1 1545 721 153 56 35 chr4 125902245 125902387 -29727733 + B1_Mur4 SINE Alu 6 150 0 1 1545 1639 26 16 0 chr4 125902389 125902578 -29727542 + B2_Mm1a SINE B2 1 192 -1 1 1545 1104 57 0 60 chr4 125902611 125902761 -29727359 + B1_Mus1 SINE Alu 2 142 -6 1 1545 203 0 0 36 chr4 125902762 125902790 -29727330 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1545 1507 69 16 0 chr4 125903024 125903212 -29726908 - B2_Mm2 SINE B2 -3 192 2 1 1545 27 0 0 26 chr4 125903219 125903241 -29726879 + AT_rich Low_complexity Low_complexity 1 22 0 1 1545 1477 51 40 0 chr4 125903241 125903418 -29726702 + B2_Mm2 SINE B2 2 185 -10 1 1545 27 0 0 26 chr4 125903418 125903433 -29726687 + AT_rich Low_complexity Low_complexity 1 15 0 1 1545 966 160 199 6 chr4 125903433 125903609 -29726511 - B3 SINE B2 -6 210 1 1 1545 247 317 4 132 chr4 125904099 125904212 -29725908 - B1_Mur3 SINE Alu -15 105 3 1 1545 358 259 52 69 chr4 125905496 125905612 -29724508 - PB1D7 SINE Alu 0 120 7 1 1545 258 270 95 0 chr4 125906049 125906112 -29724008 - B4 SINE B4 -222 70 2 1 1545 759 175 88 0 chr4 125906132 125906269 -29723851 - B1_Mur4 SINE Alu -1 149 1 1 1545 572 202 34 0 chr4 125906287 125906406 -29723714 - B1_Mus2 SINE Alu -2 145 23 1 1545 830 114 287 7 chr4 125906474 125906624 -29723496 - B2_Mm2 SINE B2 -3 192 1 1 1545 263 327 43 30 chr4 125906715 125906879 -29723241 + L2c LINE L2 2763 2928 -491 1 1545 1305 20 0 0 chr4 125906907 125907054 -29723066 - B1_Mus2 SINE Alu 0 147 1 1 1545 189 317 143 57 chr4 125907215 125907516 -29722604 + L2c LINE L2 3061 3387 0 1 1545 242 209 43 29 chr4 125908035 125908104 -29722016 - RSINE1 SINE B4 -10 155 86 1 1545 276 284 0 51 chr4 125908209 125908287 -29721833 + ID4_ SINE ID 5 78 -5 1 1545 306 0 0 0 chr4 125908287 125908321 -29721799 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1545 255 333 0 0 chr4 125908528 125908615 -29721505 - MLT1F LTR MaLR -115 454 368 1 1545 290 333 101 13 chr4 125908670 125908819 -29721301 - MLT1F LTR MaLR -335 213 52 1 1545 241 365 73 65 chr4 125908869 125909130 -29720990 - MLT1L LTR MaLR -342 268 6 1 1545 371 282 101 40 chr4 125912459 125912607 -29717513 - RSINE1 SINE B4 -7 158 2 1 1545 203 289 0 0 chr4 125912863 125912915 -29717205 + G-rich Low_complexity Low_complexity 1 52 0 1 1545 377 219 12 0 chr4 125912940 125913022 -29717098 + B1F1 SINE Alu 67 149 0 1 1545 265 254 69 62 chr4 125913098 125913228 -29716892 + B1F2 SINE Alu 14 144 -5 1 1545 546 202 126 0 chr4 125913230 125913349 -29716771 + RSINE1 SINE B4 3 136 -29 1 1545 358 318 26 88 chr4 125913390 125913583 -29716537 + B4 SINE B4 41 221 -71 1 1545 780 167 0 0 chr4 125913449 125913587 -29716533 + B1_Mur3 SINE Alu 11 148 -1 1 1545 275 261 0 14 chr4 125913602 125913672 -29716448 + ID4_ SINE ID 2 70 -13 1 1545 246 213 0 0 chr4 125913965 125914012 -29716108 + CT-rich Low_complexity Low_complexity 3 49 0 1 1545 210 71 0 0 chr4 125914036 125914064 -29716056 + (GGA)n Simple_repeat Simple_repeat 1 28 0 1 1545 455 217 0 0 chr4 125914715 125914798 -29715322 + ID4 SINE ID 1 83 0 1 1545 466 271 52 100 chr4 125916444 125916674 -29713446 - MIRb SINE MIR -14 254 36 1 1545 21 36 0 0 chr4 125916950 125916978 -29713142 + AT_rich Low_complexity Low_complexity 1 28 0 1 1545 189 0 0 0 chr4 125918355 125918376 -29711744 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 1 1545 609 130 189 8 chr4 125918438 125918570 -29711550 - URR1A DNA MER1_type 0 226 71 1 1545 1253 34 0 14 chr4 125918608 125918756 -29711364 - B1_Mus2 SINE Alu -1 146 1 1 1545 258 309 134 31 chr4 125918800 125918927 -29711193 + MIR3 SINE MIR 23 162 -46 1 1545 276 30 0 0 chr4 125919696 125919729 -29710391 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1 1545 218 363 28 47 chr4 125919741 125919848 -29710272 - L2b LINE L2 -35 3340 3236 1 1545 664 224 37 37 chr4 125920108 125920270 -29709850 - RSINE1 SINE B4 0 165 4 1 1545 1102 174 45 5 chr4 125920494 125920696 -29709424 + B3 SINE B2 1 210 -6 1 1545 1038 116 0 20 chr4 125920746 125920895 -29709225 + B1_Mur4 SINE Alu 5 150 0 1 1545 437 245 66 0 chr4 125920953 125921059 -29709061 + B1F1 SINE Alu 9 121 -28 1 1545 403 276 73 0 chr4 125921067 125921190 -29708930 + B1F SINE Alu 3 134 -15 1 1545 553 42 0 0 chr4 125921213 125921284 -29708836 - BC1_Mm scRNA scRNA -80 72 2 1 1545 387 0 0 0 chr4 125921926 125921969 -29708151 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1545 351 0 0 0 chr4 125921969 125922007 -29708113 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1545 615 175 61 0 chr4 125922009 125922123 -29707997 - B1_Mur2 SINE Alu -18 131 11 1 1545 254 354 95 25 chr4 125922135 125922286 -29707834 - MIR SINE MIR -2 260 95 1 1545 316 261 16 80 chr4 125922286 125922411 -29707709 - PB1D10 SINE Alu 0 117 1 1 1545 254 354 95 25 chr4 125922411 125922459 -29707661 - MIR SINE MIR -168 94 47 1 1545 770 177 249 0 chr4 125922479 125922660 -29707460 + URR1A DNA MER1_type 1 226 0 1 1545 221 342 13 0 chr4 125923017 125923096 -29707024 - MIRb SINE MIR -156 112 33 1 1545 590 297 262 24 chr4 125923529 125924205 -29705915 + L2 LINE L2 2050 2886 -533 1 1545 304 264 71 52 chr4 125924434 125924532 -29705588 + RSINE1 SINE B4 9 107 -185 1 1545 223 349 0 0 chr4 125924595 125924661 -29705459 - ID4_ SINE ID -13 70 5 1 1545 402 308 0 53 chr4 125924662 125924813 -29705307 - B1F SINE Alu 0 149 7 1 1545 458 267 55 55 chr4 125924845 125925027 -29705093 - B3A SINE B2 -16 182 1 1 1545 452 216 138 47 chr4 125926032 125926191 -29703929 + B1_Mur2 SINE Alu 2 149 0 1 1545 225 0 0 0 chr4 125926745 125926770 -29703350 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1545 405 0 0 0 chr4 125927015 125927060 -29703060 + (CCTG)n Simple_repeat Simple_repeat 3 47 0 1 1545 204 200 0 0 chr4 125927180 125927225 -29702895 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 1 1545 455 264 36 0 chr4 125927266 125927376 -29702744 + PB1D10 SINE Alu 3 116 -1 1 1545 927 129 0 26 chr4 125927382 125927533 -29702587 + B1_Mus1 SINE Alu 2 148 0 1 1545 224 107 34 51 chr4 125927556 125927615 -29702505 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1 1545 342 241 29 14 chr4 125928299 125928358 -29701762 + (CAGAGA)n Simple_repeat Simple_repeat 4 63 0 1 1545 246 32 0 0 chr4 125928358 125928389 -29701731 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 1545 342 241 29 14 chr4 125928389 125928468 -29701652 + (CAGAGA)n Simple_repeat Simple_repeat 4 83 0 1 1545 341 281 125 28 chr4 125928602 125928778 -29701342 - MIR SINE MIR -60 202 10 1 1545 515 258 137 29 chr4 125929393 125929597 -29700523 + MIR SINE MIR 29 254 -8 1 1545 1176 71 6 17 chr4 125930552 125930564 -29699556 - B2_Mm1t SINE B2 -23 170 161 1 1545 182 62 0 30 chr4 125930564 125930597 -29699523 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 1545 1176 71 6 17 chr4 125930597 125930756 -29699364 - B2_Mm1t SINE B2 -33 160 1 1 1545 279 0 0 0 chr4 125932359 125932390 -29697730 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1545 569 233 12 88 chr4 125934908 125934999 -29695121 + ID SINE ID 6 84 -140 1 1545 310 286 0 0 chr4 125934999 125935076 -29695044 + PB1D10 SINE Alu 4 80 -37 1 1545 629 225 25 0 chr4 125935081 125935201 -29694919 + RSINE1 SINE B4 8 130 -35 1 1545 514 139 0 0 chr4 125935233 125935312 -29694808 + B1_Mus2 SINE Alu 50 128 -19 1 1545 300 27 0 0 chr4 125935313 125935350 -29694770 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1545 213 132 0 0 chr4 125935350 125935388 -29694732 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 1545 619 213 24 0 chr4 125935390 125935517 -29694603 - B1_Mur1 SINE Alu -10 139 10 1 1545 36 40 0 0 chr4 125935550 125935600 -29694520 + AT_rich Low_complexity Low_complexity 1 50 0 1 1545 25 0 0 0 chr4 125935655 125935680 -29694440 + AT_rich Low_complexity Low_complexity 1 25 0 1 1545 326 292 11 0 chr4 125935692 125935781 -29694339 + MIRb SINE MIR 164 253 -15 1 1545 482 306 107 28 chr4 125936285 125936463 -29693657 + MER20 DNA MER1_type 28 219 0 1 1545 185 94 31 0 chr4 125936720 125936752 -29693368 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1545 251 114 23 0 chr4 125937562 125937606 -29692514 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 1 1545 408 216 0 73 chr4 125937618 125937728 -29692392 - ID_B1 SINE B4 0 224 123 1 1545 245 246 87 0 chr4 125937872 125937885 -29692235 - BC1_Mm scRNA scRNA -60 92 18 1 1545 294 232 0 0 chr4 125937885 125937941 -29692179 - tRNA-Ala-GCA tRNA tRNA -8 67 12 1 1545 294 297 167 41 chr4 125940029 125940250 -29689870 - MIRb SINE MIR 0 268 20 1 1545 212 0 36 0 chr4 125940505 125940533 -29689587 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1545 822 271 23 19 chr4 125940599 125940813 -29689307 + ID_B1 SINE B4 1 215 -9 1 1545 216 0 0 0 chr4 125941083 125941107 -29689013 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 1545 481 148 0 0 chr4 125941107 125941182 -29688938 - BC1_Mm scRNA scRNA -76 76 2 1 1545 435 167 0 0 chr4 125941754 125941826 -29688294 - B1_Mur1 SINE Alu -4 145 74 1 1545 294 247 131 20 chr4 125941832 125941931 -29688189 + L2a LINE L2 3278 3387 -39 1 1545 280 278 10 58 chr4 125942034 125942137 -29687983 - PB1D10 SINE Alu -3 114 17 1 1545 1758 162 128 3 chr4 125942197 125942555 -29687565 - MTC LTR MaLR -7 414 12 1 1545 575 232 32 0 chr4 125942565 125942690 -29687430 - RSINE1 SINE B4 -22 143 15 1 1545 281 257 14 14 chr4 125943062 125943133 -29686987 - ID4 SINE ID -8 75 5 1 1545 1262 41 0 0 chr4 125943397 125943542 -29686578 - B1_Mm SINE Alu -1 146 2 1 1545 1086 168 62 29 chr4 125943584 125943793 -29686327 - B3 SINE B2 0 216 1 1 1545 225 293 120 52 chr4 125944422 125944613 -29685507 + MIRc SINE MIR 5 208 -60 1 1545 748 221 21 0 chr4 125944628 125944768 -29685352 + B1_Mur1 SINE Alu 2 144 -5 1 1545 403 179 100 25 chr4 125944980 125945100 -29685020 + B3 SINE B2 84 212 -4 1 1545 1096 103 0 0 chr4 125945206 125945352 -29684768 + B1_Mus2 SINE Alu 2 147 0 1 1545 339 65 0 0 chr4 125945352 125945398 -29684722 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1545 487 291 30 60 chr4 125945398 125945566 -29684554 + RSINE1 SINE B4 1 163 -2 1 1545 342 0 0 0 chr4 125945572 125945610 -29684510 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1545 445 169 13 0 chr4 125945736 125945813 -29684307 - ID2 SINE ID -4 79 2 1 1545 1000 269 74 50 chr4 125945874 125946332 -29683788 - RLTR12B LTR ERVK -43 485 17 1 1545 5167 193 46 16 chr4 125946346 125947520 -29682600 - MYSERV-int LTR ERVK 0 6550 5342 1 1545 798 43 256 0 chr4 125947520 125947637 -29682483 + B1_Mm SINE Alu 1 147 0 1 1545 322 164 0 0 chr4 125947707 125947762 -29682358 - RLTR12A LTR ERVK -503 65 11 1 1545 816 214 167 26 chr4 125947836 125948100 -29682020 - MTD LTR MaLR 0 419 119 1 1545 589 274 7 13 chr4 125948140 125948295 -29681825 + B3 SINE B2 52 205 -11 1 1545 647 171 15 23 chr4 125948313 125948445 -29681675 - MTD LTR MaLR -288 131 1 1 1545 734 243 7 0 chr4 125948503 125948643 -29681477 + RSINE1 SINE B4 3 143 -22 1 1545 219 125 0 0 chr4 125948657 125948697 -29681423 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1545 31 0 0 0 chr4 125948703 125948734 -29681386 + AT_rich Low_complexity Low_complexity 1 31 0 1 1545 621 200 96 0 chr4 125948737 125948872 -29681248 - B1_Mus1 SINE Alu 0 148 1 1 1545 1494 65 5 0 chr4 125948879 125949064 -29681056 - B2_Mm1a SINE B2 -7 186 1 1 1545 728 259 25 9 chr4 125949071 125949280 -29680840 - B3A SINE B2 0 216 11 1 1545 424 333 29 7 chr4 125950523 125950662 -29679458 + B1F1 SINE Alu 7 148 -1 1 1545 447 312 0 0 chr4 125950766 125950875 -29679245 + B1F SINE Alu 12 120 -29 1 1545 189 0 0 0 chr4 125950942 125950963 -29679157 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 1 1545 363 100 28 14 chr4 125951724 125951795 -29678325 + (TCTCCC)n Simple_repeat Simple_repeat 2 73 0 1 1545 900 145 0 32 chr4 125951792 125951977 -29678143 + CT-rich Low_complexity Low_complexity 2 180 0 1 1545 630 148 0 43 chr4 125951988 125952082 -29678038 + polypyrimidine Low_complexity Low_complexity 47 136 0 1 1545 1127 84 0 22 chr4 125952082 125952264 -29677856 + (TCCC)n Simple_repeat Simple_repeat 2 179 0 1 1545 630 148 0 43 chr4 125952264 125952310 -29677810 + polypyrimidine Low_complexity Low_complexity 2 46 0 1 1545 258 221 73 0 chr4 125953442 125953510 -29676610 - ID4 SINE ID -10 73 1 1 1545 918 97 0 7 chr4 125953545 125953680 -29676440 + B1_Mus2 SINE Alu 13 146 -1 1 1545 390 42 0 0 chr4 125953828 125953876 -29676244 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1545 491 316 45 13 chr4 125953886 125954040 -29676080 - RSINE1 SINE B4 0 165 7 1 1545 1222 41 0 7 chr4 125954057 125954203 -29675917 - B1_Mus2 SINE Alu -1 146 2 1 1545 442 174 11 11 chr4 125954257 125954344 -29675776 - B2_Mm2 SINE B2 -104 91 5 1 1545 288 0 0 0 chr4 125954785 125954817 -29675303 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1545 539 244 22 51 chr4 125956725 125956863 -29673257 - ID_B1 SINE B4 0 224 91 1 1545 1014 92 0 8 chr4 125956894 125957026 -29673094 + B1_Mus2 SINE Alu 1 131 -16 1 1545 243 0 0 0 chr4 125957027 125957054 -29673066 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1545 497 55 14 0 chr4 125957054 125957127 -29672993 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1545 602 292 25 31 chr4 125957130 125957289 -29672831 + RSINE1 SINE B4 4 161 -4 1 1545 712 242 121 0 chr4 125957307 125957497 -29672623 + B3 SINE B2 2 214 -2 1 1545 1129 52 0 0 chr4 125957504 125957638 -29672482 + B1_Mus1 SINE Alu 2 135 -13 1 1545 230 0 0 32 chr4 125957638 125957669 -29672451 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1545 307 298 0 23 chr4 125958043 125958129 -29671991 + L2a LINE L2 3336 3419 -7 1 1545 242 211 19 0 chr4 125958185 125958237 -29671883 - MER45B DNA Tip100 0 1040 988 1 1545 378 0 0 0 chr4 125958441 125958483 -29671637 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1545 340 96 55 0 chr4 125958484 125958557 -29671563 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 1 1545 343 251 18 14 chr4 125959649 125959776 -29670344 - MLT1A LTR MaLR -57 351 210 1 1545 340 285 14 37 chr4 125959812 125959955 -29670165 + MIRc SINE MIR 31 172 -90 1 1545 203 360 108 31 chr4 125959995 125960124 -29669996 - MIRm SINE MIR -123 153 8 1 1546 201 74 0 0 chr4 125960249 125960276 -29669844 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1546 1180 62 7 0 chr4 125960278 125960424 -29669696 - B1_Mus1 SINE Alu 0 148 2 1 1546 294 297 70 27 chr4 125961000 125961220 -29668900 - MIR SINE MIR -23 245 5 1 1546 438 94 0 0 chr4 125962184 125962248 -29667872 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1546 1013 163 29 48 chr4 125962280 125962486 -29667634 - MTC LTR MaLR -8 413 212 1 1546 1209 56 0 0 chr4 125962529 125962673 -29667447 - B1_Mus2 SINE Alu -2 145 2 1 1546 872 172 6 0 chr4 125962702 125962871 -29667249 + CT-rich Low_complexity Low_complexity 3 172 0 1 1546 421 169 0 0 chr4 125962871 125962936 -29667184 + polypyrimidine Low_complexity Low_complexity 3 67 0 1 1546 777 145 38 0 chr4 125962939 125963070 -29667050 - B1_Mur4 SINE Alu -1 149 14 1 1546 237 180 91 101 chr4 125962988 125963087 -29667033 - RLTR25B LTR ERVK -536 492 395 1 1546 1176 129 56 29 chr4 125963083 125963307 -29666813 - MTC LTR MaLR -211 210 1 1 1546 612 152 0 19 chr4 125963312 125963419 -29666701 - B1_Mus2 SINE Alu -25 122 18 1 1546 192 306 171 0 chr4 125963561 125963672 -29666448 + L2 LINE L2 2755 2884 -535 1 1546 29 78 0 0 chr4 125963992 125964056 -29666064 + GC_rich Low_complexity Low_complexity 1 64 0 1 1546 360 0 0 0 chr4 125964882 125964922 -29665198 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1546 1124 86 0 0 chr4 125966289 125966428 -29663692 + B1_Mur4 SINE Alu 5 143 -7 1 1546 815 19 29 0 chr4 125966431 125966534 -29663586 + (GGAAA)n Simple_repeat Simple_repeat 4 109 0 1 1546 450 79 0 0 chr4 125966746 125966809 -29663311 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1546 1015 206 27 46 chr4 125967503 125967722 -29662398 - B3 SINE B2 0 216 2 1 1546 654 198 24 0 chr4 125968376 125968502 -29661618 - B1F SINE Alu -20 129 1 1 1546 189 299 25 38 chr4 125968514 125968594 -29661526 - L3b LINE CR1 -161 321 243 1 1546 377 266 61 61 chr4 125968891 125969055 -29661065 + MIR SINE MIR 31 194 -68 1 1546 1272 115 27 0 chr4 125969198 125969381 -29660739 + B2_Mm1t SINE B2 1 188 -5 1 1546 445 233 10 10 chr4 125969390 125969494 -29660626 + RSINE1 SINE B4 25 128 -37 1 1546 399 217 33 0 chr4 125969691 125969783 -29660337 + ID_B1 SINE B4 130 224 0 1 1546 973 182 31 71 chr4 125969852 125969912 -29660208 + B3 SINE B2 1 60 -156 1 1546 1389 91 32 0 chr4 125969912 125970099 -29660021 - B2_Mm2 SINE B2 0 195 3 1 1546 973 182 31 71 chr4 125970099 125970263 -29659857 + B3 SINE B2 61 216 0 1 1546 469 246 18 0 chr4 125970971 125971085 -29659035 + RSINE1 SINE B4 8 123 -42 1 1546 890 121 0 36 chr4 125971086 125971223 -29658897 + B1_Mus2 SINE Alu 3 134 -13 1 1546 201 114 0 0 chr4 125971223 125971245 -29658875 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1546 1260 41 0 0 chr4 125971245 125971392 -29658728 - B1_Mm SINE Alu 0 147 1 1 1546 201 114 0 0 chr4 125971392 125971404 -29658716 + (T)n Simple_repeat Simple_repeat 1 12 0 1 1546 492 307 14 35 chr4 125971726 125971868 -29658252 + RSINE1 SINE B4 3 141 -24 1 1546 520 339 25 94 chr4 125971911 125972113 -29658007 - ID_B1 SINE B4 -33 191 4 1 1546 357 82 0 0 chr4 125972117 125972166 -29657954 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1546 703 268 47 42 chr4 125972796 125973010 -29657110 - ID_B1 SINE B4 -8 216 2 1 1546 211 355 0 11 chr4 125973242 125973333 -29656787 + L2c LINE L2 3053 3142 -245 1 1546 286 119 16 63 chr4 125973404 125973467 -29656653 - PB1D9 SINE Alu 0 120 61 1 1546 1187 90 73 6 chr4 125976118 125976297 -29653823 + B2_Mm2 SINE B2 1 191 -4 1 1546 378 61 0 0 chr4 125976386 125976435 -29653685 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1546 918 189 139 21 chr4 125976435 125976629 -29653491 - ID_B1 SINE B4 -6 218 2 1 1546 1251 54 0 0 chr4 125976717 125976865 -29653255 - B1_Mus1 SINE Alu 0 148 1 1 1546 1001 96 7 27 chr4 125976891 125977041 -29653079 - B1_Mus1 SINE Alu -1 147 1 1 1546 229 217 27 55 chr4 125978037 125978110 -29652010 - MIRc SINE MIR -135 133 63 1 1546 21 0 0 0 chr4 125978718 125978739 -29651381 + GC_rich Low_complexity Low_complexity 1 21 0 1 1546 208 183 67 53 chr4 125978840 125978915 -29651205 - MIR SINE MIR -91 117 42 1 1546 332 283 0 66 chr4 125979101 125979207 -29650913 - ID_B1 SINE B4 -34 190 92 1 1546 210 298 79 55 chr4 125979685 125979825 -29650295 + MIRb SINE MIR 59 204 -58 1 1546 1136 69 21 0 chr4 125979825 125979970 -29650150 + B1_Mus1 SINE Alu 1 148 0 1 1546 190 325 108 72 chr4 125979970 125979995 -29650125 + MIR SINE MIR 205 230 -32 1 1546 222 208 0 0 chr4 125980101 125980149 -29649971 + C-rich Low_complexity Low_complexity 1 48 0 1 1546 1117 74 0 0 chr4 125980718 125980853 -29649267 + B1_Mus1 SINE Alu 1 135 -13 1 1546 374 20 0 39 chr4 125980853 125980905 -29649215 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 1 1546 852 135 14 14 chr4 125981032 125981175 -29648945 + B1_Mus1 SINE Alu 6 148 0 1 1546 931 107 19 4 chr4 125981190 125981356 -29648764 + B2_Mm2 SINE B2 2 192 -6 1 1546 277 269 14 11 chr4 125981517 125981616 -29648504 - ID4 SINE ID -53 99 3 1 1546 205 318 22 45 chr4 125981727 125981816 -29648304 - MIRb SINE MIR -141 127 34 1 1546 317 105 34 20 chr4 125981947 125982016 -29648104 + B1_Mur4 SINE Alu 81 150 0 1 1546 913 252 9 23 chr4 125982174 125982393 -29647727 + ID_B1 SINE B4 2 217 -7 1 1546 727 218 13 13 chr4 125982410 125982559 -29647561 - B1_Mur1 SINE Alu 0 149 1 1 1546 207 0 0 0 chr4 125982564 125982587 -29647533 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1 1546 681 279 50 40 chr4 125982589 125982787 -29647333 - B3 SINE B2 -15 201 2 1 1546 571 232 26 7 chr4 125982830 125982982 -29647138 - L1MB8 LINE L1 -108 6070 5916 1 1546 239 185 185 0 chr4 125982987 125983052 -29647068 + ID SINE ID 4 80 -144 1 1546 229 295 0 13 chr4 125983130 125983209 -29646911 - B3A SINE B2 0 198 121 1 1546 897 158 7 7 chr4 125983247 125983394 -29646726 - B1_Mur3 SINE Alu -1 148 2 1 1546 31 44 0 0 chr4 125983402 125983447 -29646673 + AT_rich Low_complexity Low_complexity 1 45 0 1 1546 876 175 29 0 chr4 125983449 125983620 -29646500 - B3 SINE B2 -40 176 1 1 1546 1213 43 0 0 chr4 125983767 125983928 -29646192 - B2_Mm1t SINE B2 0 193 33 1 1546 549 277 34 0 chr4 125983929 125984077 -29646043 + ID_B1 SINE B4 70 222 -2 1 1546 231 36 0 0 chr4 125984077 125984105 -29646015 + (GGA)n Simple_repeat Simple_repeat 1 28 0 1 1546 486 246 78 28 chr4 125984106 125984248 -29645872 + B1F2 SINE Alu 1 149 0 1 1546 679 121 112 0 chr4 125984496 125984612 -29645508 + B3 SINE B2 2 130 -86 1 1546 355 235 42 42 chr4 125984634 125984754 -29645366 + B2_Mm1t SINE B2 74 193 0 1 1546 1097 54 0 87 chr4 125984760 125984921 -29645199 + B1_Mus2 SINE Alu 1 147 0 1 1546 221 82 31 47 chr4 125984942 125985006 -29645114 + A-rich Low_complexity Low_complexity 4 66 0 1 1546 651 196 0 0 chr4 125985001 125985134 -29644986 + GA-rich Low_complexity Low_complexity 3 135 0 1 1546 559 128 171 18 chr4 125985141 125985252 -29644868 + B1_Mus1 SINE Alu 1 128 -20 1 1546 474 167 47 38 chr4 125985285 125985391 -29644729 - B3 SINE B2 -109 107 1 1 1546 604 184 39 48 chr4 125985410 125985586 -29644534 - B3 SINE B2 -5 190 14 1 1546 1147 95 0 0 chr4 125985613 125985761 -29644359 + B1_Mus1 SINE Alu 1 148 0 1 1546 631 272 7 0 chr4 125985791 125985938 -29644182 + RSINE1 SINE B4 12 159 -6 1 1546 211 267 102 113 chr4 125985938 125985977 -29644143 + B2_Mm2 SINE B2 11 194 -1 1 1546 252 247 25 25 chr4 125986022 125986101 -29644019 - L1M4 LINE L1 -439 5745 5667 1 1546 223 186 0 0 chr4 125991337 125991380 -29638740 + T-rich Low_complexity Low_complexity 1 43 0 1 1546 959 148 14 0 chr4 125992254 125992396 -29637724 - B1_Mur2 SINE Alu -5 144 1 1 1546 1787 150 25 49 chr4 125992448 125992642 -29637478 - RMER17C LTR ERVK 0 410 220 1 1546 558 0 0 0 chr4 125992642 125992704 -29637416 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1546 1787 150 25 49 chr4 125992704 125992916 -29637204 - RMER17C LTR ERVK -191 219 14 1 1546 1104 103 6 17 chr4 125995936 125996114 -29634006 - B2_Mm2 SINE B2 -18 177 2 1 1546 903 48 186 0 chr4 125996228 125996352 -29633768 - B1_Mus1 SINE Alu -1 147 1 1 1546 421 244 50 50 chr4 125996656 125996777 -29633343 - B1F2 SINE Alu -1 148 28 1 1546 931 67 0 43 chr4 125996838 125996978 -29633142 - B1_Mus2 SINE Alu 0 147 14 1 1546 413 248 64 85 chr4 125996854 125996995 -29633125 - B4 SINE B4 -76 216 79 1 1546 1434 89 21 0 chr4 125997530 125997720 -29632400 - B2_Mm2 SINE B2 -1 194 1 1 1546 270 253 0 50 chr4 125998858 125998958 -29631162 + (CCG)n Simple_repeat Simple_repeat 2 96 0 1 1546 267 157 0 0 chr4 126001112 126001163 -29628957 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1546 210 37 0 0 chr4 126002484 126002511 -29627609 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1546 252 0 0 0 chr4 126003217 126003245 -29626875 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1546 233 0 62 0 chr4 126003642 126003674 -29626446 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1546 493 129 59 0 chr4 126003689 126003774 -29626346 - B1F SINE Alu -51 98 9 5 1546 329 247 101 0 chr4 126003705 126003794 -29626326 - B4A SINE B4 -125 167 70 6 1546 1028 126 42 7 chr4 126003830 126003974 -29626146 - B1_Mur4 SINE Alu -1 149 1 7 1546 581 57 25 109 chr4 126003991 126004110 -29626010 - B2_Mm2 SINE B2 0 195 87 8 1546 1228 62 0 20 chr4 126004125 126004274 -29625846 - B1_Mus2 SINE Alu 0 147 2 9 1546 300 324 0 0 chr4 126004368 126004439 -29625681 - tRNA-Ala-GCA tRNA tRNA -4 71 1 1 1546 1199 57 0 21 chr4 126005304 126005447 -29624673 + B1_Mus1 SINE Alu 3 142 -6 1 1546 280 0 50 0 chr4 126005449 126005489 -29624631 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 1 1546 1124 44 73 0 chr4 126006600 126006737 -29623383 - B1_Mm SINE Alu 0 147 1 1 1546 344 245 126 48 chr4 126006806 126006909 -29623211 - B1_Mus2 SINE Alu 0 147 37 1 1546 933 220 20 45 chr4 126007316 126007516 -29622604 - B3A SINE B2 -1 197 3 1 1546 207 0 0 0 chr4 126007525 126007548 -29622572 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1546 1248 29 0 0 chr4 126007896 126008032 -29622088 + B1_Mm SINE Alu 2 137 -10 1 1546 216 0 0 0 chr4 126008032 126008056 -29622064 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1546 688 199 31 8 chr4 126008397 126008524 -29621596 + B3 SINE B2 1 130 -86 1 1546 21 36 0 0 chr4 126008546 126008574 -29621546 + AT_rich Low_complexity Low_complexity 1 28 0 2 1546 520 290 19 37 chr4 126009028 126009189 -29620931 - RSINE1 SINE B4 -2 163 6 2 1546 378 107 0 0 chr4 126009362 126009418 -29620702 + (TCCC)n Simple_repeat Simple_repeat 1 56 0 2 1546 1090 113 0 7 chr4 126009418 126009560 -29620560 - B1_Mus1 SINE Alu -6 142 2 2 1546 694 209 52 0 chr4 126009717 126009851 -29620269 - B3 SINE B2 -1 215 75 2 1546 439 252 73 18 chr4 126011108 126011217 -29618903 - PB1D7 SINE Alu -5 115 1 2 1546 393 207 81 0 chr4 126011626 126011713 -29618407 - PB1D7 SINE Alu -8 112 19 2 1546 271 293 137 8 chr4 126012263 126012380 -29617740 - MIRc SINE MIR -72 196 65 2 1546 257 155 68 17 chr4 126012527 126012586 -29617534 - B1F SINE Alu 0 149 88 2 1546 551 257 24 76 chr4 126012605 126012796 -29617324 - B3A SINE B2 -13 182 1 2 1546 25 51 0 0 chr4 126012848 126012887 -29617233 + AT_rich Low_complexity Low_complexity 1 39 0 3 1546 386 270 79 10 chr4 126013023 126013124 -29616996 - B1_Mur1 SINE Alu -41 108 1 3 1546 288 198 92 151 chr4 126013124 126013140 -29616980 - MT2B LTR ERVL -338 261 152 3 1546 252 0 0 0 chr4 126013349 126013377 -29616743 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 3 1546 701 247 97 6 chr4 126014224 126014399 -29615721 - ID_B1 SINE B4 -31 193 3 3 1546 692 193 0 8 chr4 126015473 126015593 -29614527 - PB1D9 SINE Alu 0 120 2 3 1546 268 173 17 103 chr4 126016675 126016733 -29613387 - ID SINE ID -150 74 22 3 1546 22 0 0 0 chr4 126017498 126017520 -29612600 + AT_rich Low_complexity Low_complexity 1 22 0 3 1546 215 235 398 0 chr4 126017946 126018044 -29612076 - B1F SINE Alu -12 137 1 3 1546 630 280 0 0 chr4 126018140 126018283 -29611837 - RSINE1 SINE B4 -21 144 2 3 1546 238 212 112 0 chr4 126018618 126018702 -29611418 - PB1D10 SINE Alu 0 127 17 4 1546 362 288 42 17 chr4 126020380 126020500 -29609620 + PB1 SINE Alu 1 123 -4 4 1546 310 224 202 25 chr4 126022950 126023069 -29607051 - L1MC5 LINE L1 -103 7858 7719 4 1546 228 197 0 26 chr4 126023065 126023143 -29606977 - Lx9 LINE L1 -130 7514 7439 4 1546 873 215 104 30 chr4 126023214 126023415 -29606705 - B3 SINE B2 0 216 1 4 1546 320 145 32 0 chr4 126023532 126023594 -29606526 - Lx2B LINE L1 0 7000 6937 4 1546 23 0 0 0 chr4 126023671 126023694 -29606426 + AT_rich Low_complexity Low_complexity 1 23 0 4 1546 1291 48 0 0 chr4 126023694 126023841 -29606279 - B1_Mus1 SINE Alu 0 148 2 4 1546 472 310 38 25 chr4 126024142 126024301 -29605819 + RSINE1 SINE B4 3 163 -2 4 1546 969 173 11 17 chr4 126024517 126024693 -29605427 - B3 SINE B2 -5 211 37 4 1546 1111 93 7 0 chr4 126024695 126024835 -29605285 - B1_Mus2 SINE Alu -6 141 1 5 1546 21 36 0 0 chr4 126025117 126025145 -29604975 + AT_rich Low_complexity Low_complexity 1 28 0 5 1546 887 230 0 0 chr4 126025316 126025464 -29604656 - B1_Mur3 SINE Alu -1 148 1 5 1546 878 139 197 31 chr4 126025602 126025795 -29604325 - URR1B DNA MER1_type 0 225 1 5 1546 2514 31 65 0 chr4 126025942 126026235 -29603885 + L1Md_F2 LINE L1 6258 6569 -13 5 1546 682 161 62 17 chr4 126026461 126026630 -29603490 + B3 SINE B2 2 192 -3 5 1546 1509 75 27 0 chr4 126026636 126026824 -29603296 + B2_Mm2 SINE B2 1 193 -2 5 1546 1168 86 0 0 chr4 126026825 126026965 -29603155 + B1_Mus2 SINE Alu 2 141 -6 5 1546 287 25 0 24 chr4 126026972 126027013 -29603107 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 1546 209 180 20 0 chr4 126027310 126027360 -29602760 + GA-rich Low_complexity Low_complexity 5 55 0 5 1546 878 202 16 27 chr4 126027695 126027878 -29602242 - B3A SINE B2 -16 182 2 6 1546 22 35 0 0 chr4 126028374 126028403 -29601717 + AT_rich Low_complexity Low_complexity 1 29 0 6 1546 216 0 0 0 chr4 126028791 126028815 -29601305 + (CCAA)n Simple_repeat Simple_repeat 3 26 0 6 1546 916 173 92 6 chr4 126028815 126028989 -29601131 + B3 SINE B2 1 189 -27 6 1546 1930 128 21 74 chr4 126029000 126029231 -29600889 + RLTR15 LTR ERVK 1 221 -138 6 1546 1492 64 17 0 chr4 126029231 126029404 -29600716 + B2_Mm2 SINE B2 1 176 -19 6 1546 1930 128 21 74 chr4 126029404 126029551 -29600569 + RLTR15 LTR ERVK 222 359 0 6 1546 267 136 0 0 chr4 126029675 126029734 -29600386 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 1546 485 294 35 7 chr4 126029734 126029878 -29600242 + RSINE1 SINE B4 1 148 -17 6 1546 1190 313 29 7 chr4 126029915 126030336 -29599784 + L1MA4 LINE L1 5353 5782 -518 6 1546 245 213 22 157 chr4 126030385 126030474 -29599646 + RSINE1 SINE B4 81 157 -8 6 1546 383 240 61 15 chr4 126030482 126030613 -29599507 + L1MA4 LINE L1 5802 5938 -362 6 1546 246 62 0 0 chr4 126030621 126030653 -29599467 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 7 1546 725 178 8 0 chr4 126031181 126031299 -29598821 - B1_Mur2 SINE Alu -26 123 5 7 1546 231 198 207 12 chr4 126031273 126031355 -29598765 - MT2C_Mm LTR ERVL -240 235 138 7 1546 515 193 255 0 chr4 126031701 126031846 -29598274 + B3 SINE B2 1 182 -34 7 1546 667 179 0 203 chr4 126031949 126032125 -29597995 - B1_Mur2 SINE Alu -11 137 1 7 1546 49 27 0 14 chr4 126032553 126032586 -29597534 + AT_rich Low_complexity Low_complexity 1 33 0 7 1546 1296 54 0 0 chr4 126032586 126032733 -29597387 - B1_Mus1 SINE Alu 0 148 2 7 1546 49 27 0 14 chr4 126032733 126032773 -29597347 + AT_rich Low_complexity Low_complexity 1 40 0 7 1546 288 226 58 97 chr4 126032857 126032960 -29597160 + PB1D10 SINE Alu 1 99 -18 7 1546 22 0 0 0 chr4 126033107 126033129 -29596991 + AT_rich Low_complexity Low_complexity 1 22 0 7 1546 664 206 67 22 chr4 126033168 126033302 -29596818 + B1_Mur3 SINE Alu 1 140 -9 8 1546 213 39 0 0 chr4 126033309 126033335 -29596785 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1546 310 248 39 142 chr4 126033372 126033499 -29596621 + B3A SINE B2 80 193 -5 8 1546 1048 199 31 5 chr4 126033529 126033721 -29596399 - B3 SINE B2 -15 201 5 8 1546 2087 222 56 106 chr4 126033721 126033815 -29596305 - ORR1B1-int LTR MaLR -530 840 759 8 1546 1296 48 0 0 chr4 126033815 126033962 -29596158 - B1_Mus2 SINE Alu 0 147 1 8 1546 2087 222 56 106 chr4 126033962 126034507 -29595613 - ORR1B1-int LTR MaLR -612 758 233 8 1546 2416 144 16 0 chr4 126034501 126034877 -29595243 - ORR1B1 LTR MaLR -12 382 1 8 1546 613 208 32 0 chr4 126034877 126035002 -29595118 - ORR1B1-int LTR MaLR -1241 129 1 8 1546 2097 155 62 35 chr4 126035002 126035370 -29594750 - ORR1B1 LTR MaLR 0 378 1 8 1546 940 163 0 14 chr4 126035385 126035528 -29594592 - B1_Mus2 SINE Alu -2 145 5 8 1546 736 252 19 0 chr4 126035740 126035895 -29594225 - RSINE1 SINE B4 0 165 8 8 1546 404 278 85 12 chr4 126036500 126036664 -29593456 + L1MC2 LINE L1 5731 5906 -438 8 1546 842 161 0 27 chr4 126036685 126036832 -29593288 + B1_Mus1 SINE Alu 6 148 0 8 1546 851 53 0 9 chr4 126036845 126036959 -29593161 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 9 1546 957 277 90 34 chr4 126036959 126037112 -29593008 + L1MC2 LINE L1 5882 6031 -313 9 1546 1268 35 0 0 chr4 126037112 126037250 -29592870 + B1_Mus1 SINE Alu 2 139 -9 9 1546 211 28 56 0 chr4 126037250 126037286 -29592834 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 9 1546 957 275 95 35 chr4 126037286 126037571 -29592549 + L1MC2 LINE L1 6032 6341 -3 9 1546 230 293 0 0 chr4 126037573 126037631 -29592489 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1546 2376 108 9 39 chr4 126037847 126038183 -29591937 + ORR1A2 LTR MaLR 2 327 0 9 1546 304 297 13 39 chr4 126038230 126038307 -29591813 - ID4 SINE ID 0 83 9 9 1546 719 244 97 44 chr4 126038382 126038588 -29591532 + ID_B1 SINE B4 1 217 -7 9 1546 207 195 0 0 chr4 126038767 126038808 -29591312 + T-rich Low_complexity Low_complexity 6 46 0 9 1546 1062 218 44 5 chr4 126038887 126039090 -29591030 - B3 SINE B2 -1 215 5 9 1546 932 239 107 44 chr4 126039187 126039458 -29590662 - B4A SINE B4 -2 290 3 1 1546 4466 75 9 24 chr4 126039552 126040125 -29589995 + LTRIS2 LTR ERV1 1 564 0 1 1546 284 324 33 26 chr4 126040170 126040322 -29589798 - MIR SINE MIR -87 175 23 1 1546 1014 129 20 7 chr4 126040519 126040667 -29589453 - B1_Mur4 SINE Alu 0 150 1 1 1546 323 274 0 14 chr4 126040781 126040855 -29589265 - ID4 SINE ID -5 78 6 1 1546 243 268 33 99 chr4 126041025 126041116 -29589004 + ORR1B1-int LTR MaLR 963 1047 -462 1 1546 376 225 28 0 chr4 126041146 126041217 -29588903 - ID2 SINE ID -10 73 1 1 1546 340 179 0 45 chr4 126041260 126041348 -29588772 + GA-rich Low_complexity Low_complexity 3 86 0 1 1546 677 160 0 0 chr4 126041350 126041456 -29588664 + B1_Mus2 SINE Alu 42 147 0 1 1546 506 203 8 0 chr4 126041474 126041592 -29588528 + GA-rich Low_complexity Low_complexity 1 119 0 1 1546 864 245 25 55 chr4 126041780 126041933 -29588187 + B4A SINE B4 100 257 -35 1 1546 1107 97 14 0 chr4 126041933 126042077 -29588043 + B1_Mus1 SINE Alu 2 147 -1 1 1546 864 245 25 55 chr4 126042077 126042122 -29587998 + B4A SINE B4 258 292 0 1 1546 284 240 0 0 chr4 126042152 126042202 -29587918 - Tigger7 DNA MER2_type -34 2457 2408 1 1546 417 293 48 18 chr4 126042227 126042280 -29587840 - Tigger7 DNA MER2_type -1929 562 508 1 1546 420 20 0 0 chr4 126042280 126042329 -29587791 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1 1546 943 143 21 0 chr4 126042334 126042474 -29587646 - B1_Mus2 SINE Alu 0 147 5 1 1546 417 293 48 18 chr4 126042474 126042581 -29587539 - Tigger7 DNA MER2_type -1989 502 392 1 1546 301 305 136 78 chr4 126042589 126042692 -29587428 + B4 SINE B4 184 292 0 1 1546 295 256 12 56 chr4 126042701 126042800 -29587320 - PB1D10 SINE Alu -198 116 20 1 1546 250 216 103 51 chr4 126042909 126042987 -29587133 + ID4_ SINE ID 2 83 0 1 1546 3617 28 5 0 chr4 126043044 126043438 -29586682 + MTA_Mm LTR MaLR 1 396 0 1 1546 8786 49 45 1 chr4 126043438 126044490 -29585630 + MTA_Mm-int LTR MaLR 1 1098 0 1 1546 3728 18 2 0 chr4 126044490 126044885 -29585235 + MTA_Mm LTR MaLR 1 396 0 1 1546 420 274 6 151 chr4 126045194 126045353 -29584767 + RSINE1 SINE B4 2 137 -28 1 1546 24 32 0 0 chr4 126045356 126045387 -29584733 + AT_rich Low_complexity Low_complexity 1 31 0 1 1546 1029 144 11 6 chr4 126045502 126045676 -29584444 - B2_Mm2 SINE B2 -20 175 1 1 1546 331 267 53 91 chr4 126046161 126046293 -29583827 + MT2B LTR ERVL 152 278 -323 1 1546 945 88 14 22 chr4 126046181 126046320 -29583800 + B1_Mus2 SINE Alu 10 147 0 1 1546 24 0 0 0 chr4 126046447 126046471 -29583649 + AT_rich Low_complexity Low_complexity 1 24 0 1 1546 903 127 97 0 chr4 126046691 126046825 -29583295 - B1_Mus2 SINE Alu 0 147 1 1 1546 1301 53 0 6 chr4 126046894 126047065 -29583055 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 1 1546 1657 157 0 29 chr4 126047067 126047342 -29582778 - Lx2B LINE L1 -15 6985 6719 1 1546 397 159 67 11 chr4 126047372 126047461 -29582659 - Lx4A LINE L1 -7 7051 6958 1 1546 2019 94 176 0 chr4 126047884 126048213 -29581907 + MTC LTR MaLR 3 389 -32 1 1546 655 238 121 92 chr4 126048343 126048625 -29581495 + B4A SINE B4 3 292 0 1 1546 24 32 0 0 chr4 126049598 126049629 -29580491 + AT_rich Low_complexity Low_complexity 1 31 0 1 1546 663 291 20 0 chr4 126049629 126049780 -29580340 - RSINE1 SINE B4 -8 157 4 1 1546 830 193 7 0 chr4 126049796 126049936 -29580184 - B1_Mur2 SINE Alu 0 149 9 1 1546 355 244 64 22 chr4 126049968 126050068 -29580052 - Charlie24 DNA MER1_type -2 2448 2348 1 1546 922 45 0 0 chr4 126050172 126050284 -29579836 + B2_Mm2 SINE B2 1 112 -83 1 1546 218 337 102 0 chr4 126050439 126050537 -29579583 - PB1D10 SINE Alu -8 109 2 1 1546 561 212 136 0 chr4 126050590 126050708 -29579412 - B1_Mur3 SINE Alu -14 135 2 1 1546 308 278 41 0 chr4 126050766 126050863 -29579257 + Charlie5 DNA MER1_type 6 106 -2518 1 1546 198 246 84 28 chr4 126050956 126051027 -29579093 + L3 LINE CR1 894 968 -3521 1 1546 312 250 55 14 chr4 126051168 126051241 -29578879 - ID4 SINE ID -6 77 2 1 1546 474 274 57 36 chr4 126051245 126051385 -29578735 + MER20 DNA MER1_type 56 198 -21 1 1546 1286 20 0 7 chr4 126051547 126051694 -29578426 - B1_Mus2 SINE Alu 0 147 2 1 1546 29 90 0 0 chr4 126051730 126051808 -29578312 + AT_rich Low_complexity Low_complexity 1 78 0 1 1546 334 263 78 39 chr4 126053321 126053424 -29576696 + MamRep137 DNA TcMar? 1 107 -337 1 1546 243 122 0 0 chr4 126054089 126054130 -29575990 - U3 snRNA snRNA -176 41 1 1 1546 31 0 0 0 chr4 126054291 126054322 -29575798 + AT_rich Low_complexity Low_complexity 1 31 0 1 1546 201 121 0 0 chr4 126054384 126054417 -29575703 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1546 468 0 0 0 chr4 126054433 126054485 -29575635 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1546 1418 75 6 0 chr4 126054675 126054849 -29575271 + B2_Mm2 SINE B2 2 176 -19 1 1546 432 245 108 0 chr4 126055151 126055253 -29574867 - B1_Mur1 SINE Alu -9 140 28 1 1546 460 284 52 33 chr4 126055297 126055450 -29574670 - B3A SINE B2 -19 197 42 1 1546 585 200 9 9 chr4 126055542 126055658 -29574462 + PB1D9 SINE Alu 5 120 0 1 1546 1579 73 5 0 chr4 126055776 126055967 -29574153 - B2_Mm1t SINE B2 0 193 2 1 1546 287 239 149 21 chr4 126056335 126056429 -29573691 - ID_B1 SINE B4 0 224 119 1 1546 9400 90 25 4 chr4 126056434 126057908 -29572212 + L1_Mur1 LINE L1 2662 4166 -1720 1 1546 401 280 161 0 chr4 126058445 126058563 -29571557 + RSINE1 SINE B4 3 139 -26 1 1546 337 262 60 0 chr4 126058951 126059035 -29571085 - BC1_Mm scRNA scRNA -62 90 2 1 1546 1379 73 17 0 chr4 126059209 126059386 -29570734 + B2_Mm2 SINE B2 2 181 -14 1 1546 244 167 94 12 chr4 126059434 126059519 -29570601 + Lx6 LINE L1 7343 7434 -26 1 1546 22 0 0 0 chr4 126059652 126059674 -29570446 + AT_rich Low_complexity Low_complexity 1 22 0 1 1546 276 277 62 0 chr4 126059690 126059755 -29570365 - ID4 SINE ID -13 70 2 1 1546 576 300 71 52 chr4 126059813 126060024 -29570096 + B3 SINE B2 1 215 -1 1 1546 282 253 39 26 chr4 126060279 126060356 -29569764 + ID4 SINE ID 3 80 -3 1 1546 1076 178 35 0 chr4 126060643 126060840 -29569280 + B3 SINE B2 3 206 -10 1 1546 441 0 0 0 chr4 126061213 126061262 -29568858 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1546 632 220 66 13 chr4 126061390 126061542 -29568578 + RSINE1 SINE B4 2 161 -4 1 1546 607 194 17 50 chr4 126061559 126061738 -29568382 + Lx2B LINE L1 6824 6996 -4 1 1546 354 74 0 0 chr4 126061853 126061907 -29568213 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1546 355 312 31 110 chr4 126061977 126062204 -29567916 + HAL1 LINE L1 436 644 -1863 1 1546 2380 60 6 0 chr4 126062428 126062733 -29567387 + L1_Mm LINE L1 5283 5589 -294 1 1546 8331 32 2 4 chr4 126062733 126063732 -29566388 + L1Md_F3 LINE L1 5588 6584 0 1 1546 2380 60 6 0 chr4 126063732 126063744 -29566376 + L1_Mm LINE L1 5590 5601 -282 1 1546 1577 22 0 16 chr4 126063744 126063931 -29566189 + B2_Mm1a SINE B2 2 185 -8 1 1546 1093 37 0 0 chr4 126064021 126064157 -29565963 + B1_Mm SINE Alu 12 147 0 1 1546 281 271 371 0 chr4 126064468 126064608 -29565512 + RCHARR1 DNA MER1_type 22 213 -761 1 1546 578 165 98 45 chr4 126064656 126064789 -29565331 + B1_Mur2 SINE Alu 9 148 -1 1 1546 997 199 92 17 chr4 126064786 126065026 -29565094 + RCHARR1 DNA MER1_type 482 739 -235 1 1546 468 146 177 0 chr4 126065042 126065138 -29564982 - ID_B1 SINE B4 -28 196 84 1 1546 40 37 0 0 chr4 126065217 126065271 -29564849 + AT_rich Low_complexity Low_complexity 1 54 0 1 1546 271 176 71 0 chr4 126065271 126065356 -29564764 + RCHARR1 DNA MER1_type 809 899 -75 1 1546 259 339 86 35 chr4 126065729 126065845 -29564275 - PB1 SINE Alu -5 122 1 1 1546 312 219 47 0 chr4 126065900 126065964 -29564156 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 1 1546 1243 20 7 0 chr4 126066141 126066287 -29563833 + B1_Mus2 SINE Alu 1 147 0 1 1546 733 201 58 0 chr4 126066650 126066789 -29563331 - B1_Mur4 SINE Alu 0 150 4 1 1546 210 86 0 0 chr4 126066812 126066824 -29563296 + (A)n Simple_repeat Simple_repeat 1 12 0 1 1546 1277 20 0 0 chr4 126066824 126066971 -29563149 + B1_Mm SINE Alu 1 147 0 1 1546 210 86 0 0 chr4 126066971 126066993 -29563127 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1546 1153 115 0 17 chr4 126067114 126067132 -29562988 - B2_Mm2 SINE B2 -20 175 159 1 1546 185 0 0 39 chr4 126067132 126067158 -29562962 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1546 1153 115 0 17 chr4 126067158 126067316 -29562804 - B2_Mm2 SINE B2 -37 158 2 1 1546 334 333 77 68 chr4 126067450 126067519 -29562601 - L1M5 LINE L1 -1443 4703 4640 1 1546 323 216 162 20 chr4 126067519 126067618 -29562502 + PB1D9 SINE Alu 1 113 -7 1 1546 334 333 77 68 chr4 126067618 126067796 -29562324 - L1M5 LINE L1 -1507 4639 4454 1 1546 213 316 0 136 chr4 126068056 126068166 -29561954 - L2c LINE L2 -182 3205 3111 1 1546 504 188 78 19 chr4 126068450 126068553 -29561567 - B1F SINE Alu -34 115 7 1 1546 363 304 86 23 chr4 126068558 126068686 -29561434 - B1F SINE Alu -1 148 13 1 1546 255 210 12 24 chr4 126068776 126068859 -29561261 + A-rich Low_complexity Low_complexity 3 84 0 1 1546 430 278 22 22 chr4 126068965 126069101 -29561019 - B1F SINE Alu -13 136 1 1 1546 845 263 92 85 chr4 126069102 126069492 -29560628 + MLT2C1 LTR ERVL 5 397 0 1 1546 770 234 5 71 chr4 126069492 126069690 -29560430 - MLT1J-int LTR MaLR -635 752 568 1 1546 306 356 36 18 chr4 126069697 126069863 -29560257 + L2 LINE L2 2695 2863 -556 1 1546 561 208 155 4 chr4 126069881 126070132 -29559988 - L1M5 LINE L1 -2984 3162 2874 1 1546 240 35 0 0 chr4 126070230 126070259 -29559861 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1546 348 330 8 94 chr4 126070923 126071050 -29559070 + PB1D10 SINE Alu 1 116 -1 1 1546 428 178 123 47 chr4 126071193 126071299 -29558821 - PB1D9 SINE Alu -2 118 5 1 1546 519 248 11 118 chr4 126071365 126071543 -29558577 + RSINE1 SINE B4 3 161 -4 2 1546 600 246 15 0 chr4 126071682 126071812 -29558308 - B1F SINE Alu 0 149 18 2 1546 248 311 104 0 chr4 126071822 126071986 -29558134 + L1M7 LINE L1 1517 1697 -4521 2 1546 592 230 0 47 chr4 126072223 126072351 -29557769 + B1_Mur1 SINE Alu 18 139 -10 2 1546 192 77 0 0 chr4 126072351 126072377 -29557743 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1546 885 222 63 0 chr4 126072766 126072955 -29557165 + B3 SINE B2 1 201 -15 2 1546 297 20 0 57 chr4 126072959 126073012 -29557108 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2 1546 723 183 69 0 chr4 126073156 126073287 -29556833 + B1_Mur4 SINE Alu 11 150 0 2 1546 240 35 0 0 chr4 126073290 126073319 -29556801 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 2 1546 24 0 0 0 chr4 126073474 126073498 -29556622 + AT_rich Low_complexity Low_complexity 1 24 0 2 1546 3518 172 69 4 chr4 126073521 126074198 -29555922 + Lx5 LINE L1 6181 6901 -149 2 1546 950 234 0 26 chr4 126074306 126074499 -29555621 + B3 SINE B2 2 189 -27 2 1546 26 30 0 0 chr4 126074726 126074759 -29555361 + AT_rich Low_complexity Low_complexity 1 33 0 2 1546 1218 35 7 0 chr4 126074767 126074911 -29555209 + B1_Mm SINE Alu 2 146 -1 2 1546 621 221 250 0 chr4 126074934 126075106 -29555014 - B3 SINE B2 0 216 2 2 1546 268 354 37 12 chr4 126075508 126075671 -29554449 - B3A SINE B2 -30 168 2 2 1546 417 75 0 0 chr4 126076173 126076240 -29553880 - Lx LINE L1 0 6654 6588 2 1546 703 241 178 4 chr4 126076504 126076762 -29553358 + Lx8 LINE L1 6833 7135 -338 2 1546 358 268 78 42 chr4 126076855 126077046 -29553074 + Lx8 LINE L1 7268 7465 -8 2 1546 284 297 114 41 chr4 126077245 126077351 -29552769 + B1F SINE Alu 18 137 -12 2 1546 1160 34 7 33 chr4 126077351 126077502 -29552618 + B1_Mus2 SINE Alu 1 147 0 2 1546 284 297 114 41 chr4 126077502 126077518 -29552602 + B1F SINE Alu 138 149 0 2 1546 208 135 0 0 chr4 126077519 126077556 -29552564 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1546 1437 135 30 51 chr4 126077655 126078014 -29552106 + BGLII LTR ERVK 1 421 0 2 1546 260 309 26 26 chr4 126078016 126078035 -29552085 + L1MC4 LINE L1 5573 5590 -2292 2 1546 934 127 42 0 chr4 126078035 126078177 -29551943 - B1_Mus1 SINE Alu 0 148 1 2 1546 260 309 26 26 chr4 126078177 126078270 -29551850 + L1MC4 LINE L1 5591 5685 -2197 2 1546 3362 105 164 89 chr4 126079051 126079827 -29550293 + Lx3C LINE L1 6143 6976 0 2 1546 739 229 7 14 chr4 126080748 126080894 -29549226 - B1_Mur1 SINE Alu -1 148 4 2 1546 1232 40 0 0 chr4 126081757 126081905 -29548215 + B1_Mus1 SINE Alu 1 148 0 2 1546 185 0 40 0 chr4 126081905 126081930 -29548190 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1546 510 193 73 15 chr4 126081958 126082095 -29548025 + Lx5 LINE L1 6901 7045 -5 2 1546 23 33 0 0 chr4 126082096 126082126 -29547994 + AT_rich Low_complexity Low_complexity 1 30 0 2 1546 335 298 47 55 chr4 126082194 126082450 -29547670 + L1MC4 LINE L1 5804 6057 -1825 2 1546 298 185 36 18 chr4 126082527 126082582 -29547538 + PB1 SINE Alu 32 87 -40 2 1546 230 274 20 0 chr4 126082591 126082642 -29547478 + B1F SINE Alu 1 52 -97 2 1546 593 152 8 43 chr4 126082642 126082759 -29547361 + PB1D9 SINE Alu 1 113 -7 2 1546 323 300 0 0 chr4 126082804 126082874 -29547246 + B1F2 SINE Alu 43 112 -37 2 1546 389 219 169 11 chr4 126083072 126083316 -29546804 + L1MB3 LINE L1 5149 5439 -729 2 1546 379 315 23 30 chr4 126083317 126083448 -29546672 + B1F2 SINE Alu 1 130 -19 2 1546 1083 230 122 8 chr4 126083454 126083814 -29546306 + L1MB3 LINE L1 5745 6145 -38 2 1546 582 300 116 18 chr4 126083857 126084305 -29545815 + L1MC4 LINE L1 7278 7769 -273 2 1546 300 257 34 34 chr4 126084493 126084610 -29545510 + L1MC4 LINE L1 7918 8034 -8 2 1546 915 234 49 0 chr4 126084686 126084891 -29545229 + B3 SINE B2 1 215 -1 2 1546 234 287 51 58 chr4 126085139 126085276 -29544844 + L3 LINE CR1 990 1125 -3364 2 1546 386 213 13 0 chr4 126085605 126085680 -29544440 + ID4_ SINE ID 4 79 -4 2 1546 319 227 0 102 chr4 126086900 126087008 -29543112 + B1_Mur3 SINE Alu 2 98 -51 2 1546 265 253 12 37 chr4 126087390 126087472 -29542648 - L1M5 LINE L1 -479 5715 5636 2 1546 222 261 0 0 chr4 126088032 126088078 -29542042 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1546 519 195 359 13 chr4 126088337 126088493 -29541627 + B3 SINE B2 1 210 -6 2 1546 2211 164 74 15 chr4 126088540 126088930 -29541190 + MTC LTR MaLR 1 413 -8 2 1546 21 0 0 0 chr4 126089007 126089028 -29541092 + AT_rich Low_complexity Low_complexity 1 21 0 2 1546 276 193 0 33 chr4 126089090 126089149 -29540971 - B4 SINE B4 -212 80 28 2 1546 357 277 8 98 chr4 126089263 126089395 -29540725 - PB1D7 SINE Alu 0 120 1 2 1546 4799 137 98 8 chr4 126089643 126090435 -29539685 + RMER19B LTR ERVK 1 864 -38 2 1546 1416 63 10 40 chr4 126090436 126090635 -29539485 + B2_Mm1t SINE B2 1 193 0 2 1546 234 0 0 0 chr4 126090671 126090697 -29539423 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1546 240 88 0 0 chr4 126090697 126090731 -29539389 + RMER19B LTR ERVK 850 883 -19 2 1546 261 0 0 0 chr4 126090865 126090894 -29539226 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 193 1453 58 5 5 chr4 126091231 126091420 -29538700 + B2_Mm2 SINE B2 2 190 -5 2 1547 28 29 0 0 chr4 126091450 126091485 -29538635 + AT_rich Low_complexity Low_complexity 1 35 0 2 1547 1215 93 0 0 chr4 126091495 126091816 -29538304 + (TAGG)n Simple_repeat Simple_repeat 1 321 0 2 1547 1089 96 0 0 chr4 126091818 126092068 -29538052 + (GGAA)n Simple_repeat Simple_repeat 1 250 0 2 1547 504 240 0 198 chr4 126092071 126092253 -29537867 - RSINE1 SINE B4 -15 150 5 2 1547 658 239 42 0 chr4 126092254 126092396 -29537724 - B1_Mur2 SINE Alu 0 149 2 2 1547 297 51 0 0 chr4 126092779 126092818 -29537302 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1547 834 174 216 0 chr4 126092830 126092997 -29537123 - B3 SINE B2 -11 205 3 2 1547 718 184 42 48 chr4 126093736 126093902 -29536218 + B2_Mm2 SINE B2 25 189 -6 2 1547 656 187 89 0 chr4 126094107 126094230 -29535890 - B1_Mus2 SINE Alu -9 138 5 2 1547 923 121 42 6 chr4 126094992 126095158 -29534962 - Lx2B LINE L1 -267 6733 6562 2 1547 1474 144 12 0 chr4 126095158 126095401 -29534719 + Lx2A1 LINE L1 6750 6995 -13 2 1547 828 276 60 0 chr4 126095439 126095656 -29534464 + B4A SINE B4 1 230 -62 2 1547 821 249 105 0 chr4 126095656 126095837 -29534283 + B3 SINE B2 1 200 -16 2 1547 509 301 0 8 chr4 126095922 126096046 -29534074 + ID_B1 SINE B4 92 214 -10 2 1547 207 0 0 0 chr4 126096047 126096070 -29534050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1547 478 125 28 0 chr4 126096081 126096153 -29533967 + B1_Mus2 SINE Alu 1 74 -73 2 1547 22 22 0 62 chr4 126096224 126096272 -29533848 + AT_rich Low_complexity Low_complexity 1 45 0 2 1547 183 129 0 0 chr4 126096272 126096303 -29533817 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1547 678 242 0 0 chr4 126096319 126096443 -29533677 - RSINE1 SINE B4 -37 128 5 2 1547 693 233 44 146 chr4 126096702 126096743 -29533377 + B3 SINE B2 1 39 -177 2 1547 1110 58 0 0 chr4 126096743 126096880 -29533240 + B1_Mus1 SINE Alu 1 137 -11 2 1547 693 233 44 146 chr4 126096880 126097064 -29533056 + B3 SINE B2 40 203 -13 2 1547 231 88 0 0 chr4 126097086 126097120 -29533000 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2 1547 839 277 6 3 chr4 126097144 126097349 -29532771 + B3A SINE B2 2 203 -13 2 1547 659 280 0 8 chr4 126097472 126097605 -29532515 - RSINE1 SINE B4 -19 146 15 2 1547 660 236 79 26 chr4 126097687 126097952 -29532168 + L1MB3 LINE L1 5654 5932 -251 2 1547 614 219 18 0 chr4 126097989 126098103 -29532017 + RSINE1 SINE B4 4 119 -46 2 1547 792 139 8 0 chr4 126098177 126098306 -29531814 + B1_Mus2 SINE Alu 9 138 -9 2 1547 228 67 0 0 chr4 126098306 126098336 -29531784 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1547 524 181 28 21 chr4 126098388 126098529 -29531591 + L1MB3 LINE L1 6030 6171 0 2 1547 210 164 18 35 chr4 126098696 126098715 -29531405 + (TTTA)n Simple_repeat Simple_repeat 4 22 0 2 1547 646 250 59 0 chr4 126098715 126098851 -29531269 - RSINE1 SINE B4 -17 148 5 2 1547 210 164 18 35 chr4 126098851 126098888 -29531232 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2 1547 462 198 0 0 chr4 126098902 126098983 -29531137 - B3 SINE B2 -134 82 2 2 1547 431 299 86 57 chr4 126099018 126099298 -29530822 + L1ME4a LINE L1 5614 5901 -223 2 1547 561 171 41 0 chr4 126099350 126099463 -29530657 - B1_Mur3 SINE Alu -15 134 2 2 1547 1206 61 0 0 chr4 126099651 126099799 -29530321 + B1_Mus1 SINE Alu 1 148 0 2 1547 34 42 0 0 chr4 126100500 126100548 -29529572 + AT_rich Low_complexity Low_complexity 1 48 0 2 1547 613 178 47 0 chr4 126101669 126101776 -29528344 - B1_Mur1 SINE Alu -7 142 31 2 1547 1063 65 58 0 chr4 126101962 126102101 -29528019 - B1_Mus2 SINE Alu 0 147 1 2 1547 1692 21 0 0 chr4 126102282 126102475 -29527645 - B2_Mm1a SINE B2 0 193 1 2 1547 365 267 38 9 chr4 126102717 126102823 -29527297 - PB1D10 SINE Alu -8 109 1 2 1547 224 283 121 38 chr4 126102920 126103052 -29527068 - RSINE1 SINE B4 0 165 23 2 1547 985 159 41 36 chr4 126103115 126103310 -29526810 + B3 SINE B2 2 197 -19 2 1547 24 32 0 0 chr4 126103980 126104011 -29526109 + AT_rich Low_complexity Low_complexity 1 31 0 2 1547 24 32 0 0 chr4 126104095 126104126 -29525994 + AT_rich Low_complexity Low_complexity 1 31 0 2 1547 1173 181 25 0 chr4 126104128 126104327 -29525793 - B3 SINE B2 -11 205 2 2 1547 273 57 0 0 chr4 126104472 126104507 -29525613 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 2 1547 565 211 149 0 chr4 126104509 126104623 -29525497 - B1_Mur1 SINE Alu -17 132 2 2 1547 741 221 14 7 chr4 126104789 126104935 -29525185 - B1_Mur1 SINE Alu -2 147 1 2 1547 198 0 0 0 chr4 126105848 126105870 -29524250 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1547 245 322 22 53 chr4 126107626 126107811 -29522309 + MIR SINE MIR 78 258 -10 3 1547 652 237 65 6 chr4 126108105 126108288 -29521832 - B3 SINE B2 0 198 7 3 1547 354 287 73 146 chr4 126108825 126109155 -29520965 + L1M5 LINE L1 5081 5386 -760 3 1547 1321 23 91 6 chr4 126110033 126110209 -29519911 + MTB LTR MaLR 1 191 -209 3 1547 427 193 218 40 chr4 126110257 126110381 -29519739 + B1_Mus1 SINE Alu 3 148 0 3 1547 670 234 28 0 chr4 126110907 126111052 -29519068 - B1_Mur1 SINE Alu 0 149 1 3 1547 182 289 69 49 chr4 126111596 126111698 -29518422 + L2 LINE L2 1291 1394 -2025 3 1547 213 189 0 0 chr4 126113681 126113718 -29516402 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 3 1547 574 234 41 55 chr4 126114039 126114184 -29515936 - B1F SINE Alu -5 144 2 3 1547 210 109 42 42 chr4 126117342 126117390 -29512730 + A-rich Low_complexity Low_complexity 2 49 0 3 1547 548 229 235 20 chr4 126117837 126118033 -29512087 + MIRb SINE MIR 24 261 -7 3 1547 481 116 85 0 chr4 126118102 126118266 -29511854 + GA-rich Low_complexity Low_complexity 3 180 0 3 1547 390 262 115 77 chr4 126118763 126118805 -29511315 + B4 SINE B4 37 222 -67 3 1547 715 234 15 0 chr4 126118805 126118942 -29511178 + B1_Mur1 SINE Alu 6 144 -5 3 1547 180 111 0 0 chr4 126120670 126120697 -29509423 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1547 289 318 43 70 chr4 126120736 126120851 -29509269 + PB1D10 SINE Alu 1 112 -5 3 1547 233 226 19 0 chr4 126120935 126120988 -29509132 + tRNA-Ala-GCY_ tRNA tRNA 14 67 -8 3 1547 211 330 83 106 chr4 126121299 126121648 -29508472 - L2 LINE L2 -1073 2346 2006 3 1547 28 29 0 0 chr4 126122080 126122115 -29508005 + AT_rich Low_complexity Low_complexity 1 35 0 3 1547 319 311 106 0 chr4 126122223 126122355 -29507765 + L1ME3A LINE L1 5175 5320 -826 3 1547 702 254 87 35 chr4 126122479 126122799 -29507321 + L1ME3A LINE L1 5643 6012 -161 3 1547 1525 58 5 0 chr4 126122819 126123010 -29507110 - B2_Mm1a SINE B2 0 193 2 3 1547 218 143 0 0 chr4 126123101 126123136 -29506984 + B3 SINE B2 2 36 -180 3 1547 1068 182 0 52 chr4 126123252 126123443 -29506677 - B3 SINE B2 0 216 36 3 1547 657 157 117 22 chr4 126123777 126123914 -29506206 + B1_Mur4 SINE Alu 1 150 0 3 1547 416 265 131 34 chr4 126124008 126124184 -29505936 + B3A SINE B2 1 193 -5 3 1547 445 170 190 0 chr4 126124204 126124304 -29505816 + PB1D9 SINE Alu 1 119 -1 3 1547 255 300 50 76 chr4 126124798 126124917 -29505203 + RSINE1 SINE B4 2 117 -48 3 1547 243 0 0 0 chr4 126124934 126124961 -29505159 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1547 396 0 0 0 chr4 126125151 126125195 -29504925 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 3 1547 1194 82 0 0 chr4 126126964 126127111 -29503009 + B1_Mus2 SINE Alu 1 147 0 3 1547 23 78 0 0 chr4 126127131 126127182 -29502938 + AT_rich Low_complexity Low_complexity 1 51 0 3 1547 559 203 153 23 chr4 126127261 126127392 -29502728 - B1_Mur3 SINE Alu -1 148 1 3 1547 203 61 0 29 chr4 126127462 126127496 -29502624 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 1547 1841 199 60 37 chr4 126127496 126127898 -29502222 + MTD LTR MaLR 4 414 -5 3 1547 413 262 108 31 chr4 126127898 126128028 -29502092 - B1F SINE Alu -2 147 8 3 1547 203 147 0 0 chr4 126128063 126128097 -29502023 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1547 236 368 10 21 chr4 126128133 126128230 -29501890 + PB1D10 SINE Alu 15 110 -7 3 1547 303 176 0 0 chr4 126129906 126129997 -29500123 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1547 1718 184 78 0 chr4 126130075 126130422 -29499698 + ORR1D1 LTR MaLR 1 374 0 3 1547 239 54 27 0 chr4 126130750 126130787 -29499333 + (CCCCAA)n Simple_repeat Simple_repeat 2 39 0 3 1547 294 258 150 8 chr4 126131812 126131945 -29498175 + MIRb SINE MIR 117 268 0 3 1547 350 230 2 0 chr4 126132179 126132254 -29497866 - ID SINE ID -214 78 3 3 1547 718 85 0 0 chr4 126132506 126132600 -29497520 - B1_Mur4 SINE Alu -1 149 56 3 1547 360 59 0 0 chr4 126132701 126132752 -29497368 + (CAGT)n Simple_repeat Simple_repeat 3 53 0 3 1547 939 244 134 55 chr4 126132908 126133298 -29496822 + L1MB3 LINE L1 5469 5899 -284 3 1547 457 254 25 0 chr4 126133407 126133525 -29496595 + L1MB3 LINE L1 6062 6182 -1 3 1547 255 305 171 18 chr4 126133725 126133942 -29496178 + L1MB7 LINE L1 5514 5763 -415 3 1547 284 160 0 0 chr4 126133986 126134037 -29496083 + L1MB7 LINE L1 5843 5893 -281 3 1547 696 200 64 0 chr4 126134037 126134177 -29495943 + B1_Mur3 SINE Alu 1 149 0 3 1547 785 185 0 0 chr4 126134180 126134310 -29495810 + B3 SINE B2 1 130 -86 3 1547 463 234 117 0 chr4 126134447 126134592 -29495528 + L1MB7 LINE L1 6023 6184 0 3 1547 570 231 59 91 chr4 126135220 126135368 -29494752 + ID_B1 SINE B4 3 156 -68 3 1547 1424 56 17 11 chr4 126135368 126135548 -29494572 + B2_Mm2 SINE B2 1 181 -14 3 1547 570 231 59 91 chr4 126135548 126135618 -29494502 + ID_B1 SINE B4 157 214 -10 3 1547 363 149 0 0 chr4 126135619 126135693 -29494427 + (CCAA)n Simple_repeat Simple_repeat 1 74 0 3 1547 960 162 0 5 chr4 126135716 126136157 -29493963 + (CCAA)n Simple_repeat Simple_repeat 1 438 0 3 1547 242 310 20 62 chr4 126137799 126137922 -29492198 + MIR3 SINE MIR 5 126 -150 3 1547 1379 84 10 21 chr4 126138450 126138644 -29491476 + B2_Mm1t SINE B2 2 193 0 3 1547 195 42 0 0 chr4 126138732 126138756 -29491364 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 1547 233 309 111 9 chr4 126139194 126139302 -29490818 - MER5A1 DNA MER1_type -31 135 17 3 1547 240 342 72 41 chr4 126139589 126139879 -29490241 + L1MC LINE L1 5620 5918 -1964 3 1547 3028 68 42 0 chr4 126139908 126140292 -29489828 + MTB LTR MaLR 1 400 0 3 1547 441 0 0 0 chr4 126142048 126142097 -29488023 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1547 369 0 0 0 chr4 126142097 126142137 -29487983 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1547 207 0 0 0 chr4 126144383 126144406 -29485714 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1547 648 132 0 6 chr4 126144406 126144517 -29485603 - B1_Mus1 SINE Alu -7 110 8 3 1547 384 179 19 112 chr4 126144421 126144528 -29485592 - MT2B LTR ERVL -344 257 161 3 1547 201 227 0 0 chr4 126145788 126145832 -29484288 + (CCG)n Simple_repeat Simple_repeat 3 46 0 3 1547 21 0 0 0 chr4 126146566 126146587 -29483533 + AT_rich Low_complexity Low_complexity 1 21 0 3 1547 323 246 132 15 chr4 126146766 126146902 -29483218 + L2 LINE L2 2379 2530 -889 3 1547 474 49 0 0 chr4 126147145 126147206 -29482914 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1547 710 231 7 0 chr4 126147206 126147349 -29482771 - B1_Mur1 SINE Alu -5 144 1 3 1547 770 160 8 15 chr4 126147550 126147683 -29482437 + B1_Mur2 SINE Alu 5 136 -13 3 1547 312 27 0 0 chr4 126147683 126147720 -29482400 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 1547 378 0 0 0 chr4 126147720 126147762 -29482358 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1547 369 0 0 0 chr4 126147762 126147802 -29482318 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1547 222 310 35 0 chr4 126147802 126147860 -29482260 - MER5A DNA MER1_type -129 60 1 3 1547 618 313 50 0 chr4 126147866 126148067 -29482053 + MIR SINE MIR 13 223 -39 3 1547 229 289 171 26 chr4 126148961 126148975 -29481145 + ID_B1 SINE B4 70 203 -21 3 1547 369 284 19 10 chr4 126148975 126149078 -29481042 + PB1 SINE Alu 4 107 -20 3 1547 247 326 0 21 chr4 126149085 126149182 -29480938 + GA-rich Low_complexity Low_complexity 1 95 0 3 1547 2590 170 74 34 chr4 126149327 126149559 -29480561 + Lx LINE L1 6105 6345 -309 3 1547 216 0 0 0 chr4 126149559 126149583 -29480537 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1547 2590 170 74 34 chr4 126149583 126149879 -29480241 + Lx LINE L1 6346 6653 -1 3 1547 253 236 223 46 chr4 126150146 126150320 -29479800 - L2b LINE L2 -161 3226 3028 3 1547 1234 14 0 0 chr4 126151375 126151513 -29478607 + B1_Mus2 SINE Alu 2 139 -8 3 1547 219 69 0 0 chr4 126151530 126151559 -29478561 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1547 455 171 8 20 chr4 126151574 126151675 -29478445 + B1_Mus1 SINE Alu 14 111 -9 3 1547 573 165 77 10 chr4 126151715 126151830 -29478290 - B1F SINE Alu -2 118 6 3 1547 1156 104 92 0 chr4 126151842 126152015 -29478105 - B2_Mm2 SINE B2 -5 190 2 3 1547 391 292 178 62 chr4 126152050 126152196 -29477924 - RSINE1 SINE B4 0 165 3 3 1547 833 234 8 144 chr4 126152277 126152527 -29477593 + B4 SINE B4 77 292 0 3 1547 320 259 69 106 chr4 126152608 126152768 -29477352 + L1ME3B LINE L1 4160 4313 -1833 3 1547 695 177 6 87 chr4 126152840 126153001 -29477119 + B1_Mus1 SINE Alu 1 148 0 3 1547 360 0 0 0 chr4 126153043 126153083 -29477037 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1547 534 223 0 18 chr4 126153085 126153194 -29476926 + PB1D9 SINE Alu 1 108 -12 3 1547 408 40 0 0 chr4 126153194 126153244 -29476876 + (TGAG)n Simple_repeat Simple_repeat 2 51 0 3 1547 947 44 0 0 chr4 126153284 126153398 -29476722 + B2_Mm1t SINE B2 2 115 -78 3 1547 1233 46 0 7 chr4 126153398 126153550 -29476570 + L1_Mm LINE L1 4686 4836 -1047 3 1547 605 13 0 0 chr4 126154539 126154616 -29475504 + B2_Mm1a SINE B2 117 193 0 3 1547 605 207 37 229 chr4 126154624 126154748 -29475372 + ID_B1 SINE B4 27 155 -69 3 1547 1299 27 0 0 chr4 126154748 126154895 -29475225 + B1_Mus1 SINE Alu 2 148 0 3 1547 605 207 37 229 chr4 126154895 126155014 -29475106 + ID_B1 SINE B4 156 223 -1 3 1547 394 274 292 0 chr4 126155124 126155292 -29474828 + ID_B1 SINE B4 1 217 -7 3 1547 387 300 60 30 chr4 126155322 126155456 -29474664 + B1F SINE Alu 12 149 0 3 1547 407 241 28 9 chr4 126155611 126155720 -29474400 - MTD LTR MaLR 0 419 309 3 1547 1259 201 163 15 chr4 126155725 126156068 -29474052 - RMER19A LTR ERVK -1 736 343 3 1547 267 104 0 0 chr4 126156079 126156127 -29473993 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1547 1176 61 0 13 chr4 126156128 126156277 -29473843 - B1_Mm SINE Alu 0 147 1 4 1547 401 336 41 27 chr4 126156354 126156501 -29473619 + B1F SINE Alu 1 149 0 4 1547 1269 89 15 55 chr4 126156581 126156782 -29473338 + B2_Mm2 SINE B2 1 193 -2 4 1547 243 192 19 0 chr4 126156789 126156841 -29473279 + L1ME3B LINE L1 4723 4775 -1371 3 1547 513 225 198 18 chr4 126156895 126156973 -29473147 - Tigger7 DNA MER2_type -10 2481 2395 4 1547 234 91 0 0 chr4 126156973 126157006 -29473114 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1547 513 225 198 18 chr4 126157006 126157144 -29472976 - Tigger7 DNA MER2_type -97 2394 2227 4 1547 884 261 121 47 chr4 126157135 126157433 -29472687 - Tigger7 DNA MER2_type -2083 408 89 4 1547 433 231 145 8 chr4 126157532 126157663 -29472457 - B1F SINE Alu 0 149 1 4 1547 606 281 52 21 chr4 126158009 126158216 -29471904 + B3A SINE B2 1 194 -1 4 1547 315 354 26 47 chr4 126158218 126158370 -29471750 + L1ME3B LINE L1 5135 5283 -863 3 1547 939 149 193 0 chr4 126158370 126158551 -29471569 + B3 SINE B2 1 216 0 4 1547 315 354 26 47 chr4 126158551 126158588 -29471532 + L1ME3B LINE L1 5284 5320 -826 3 1547 470 328 76 27 chr4 126158661 126158846 -29471274 + B4A SINE B4 1 194 -98 4 1547 274 270 47 65 chr4 126158751 126158858 -29471262 + B1F2 SINE Alu 13 117 -32 4 1547 863 242 45 0 chr4 126158952 126159098 -29471022 + B3 SINE B2 3 149 -67 4 1547 378 0 0 0 chr4 126159098 126159140 -29470980 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1547 863 242 45 0 chr4 126159140 126159191 -29470929 + B3 SINE B2 150 208 -8 4 1547 616 273 28 28 chr4 126159222 126159399 -29470721 + B3A SINE B2 4 180 -18 4 1547 186 307 98 10 chr4 126159654 126159756 -29470364 + MIRb SINE MIR 86 196 -66 4 1547 804 170 13 33 chr4 126159928 126160080 -29470040 - B1_Mur3 SINE Alu 0 149 1 4 1547 180 321 12 36 chr4 126160461 126160545 -29469575 + L4 LINE RTE 1277 1358 -671 4 1547 225 231 132 44 chr4 126160617 126160685 -29469435 + ID4_ SINE ID 1 74 -9 4 1547 1663 225 42 35 chr4 126160684 126161084 -29469036 - MTD-int LTR MaLR -855 403 1 4 1547 1706 179 107 29 chr4 126161086 126161471 -29468649 - MTD LTR MaLR -2 417 3 4 1547 334 285 119 6 chr4 126161517 126161676 -29468444 + L1ME3B LINE L1 5773 5949 -291 3 1547 776 262 34 10 chr4 126161714 126161918 -29468202 + B3 SINE B2 1 209 -7 4 1547 247 317 12 47 chr4 126162052 126162138 -29467982 + ID4 SINE ID 1 83 0 4 1547 196 30 61 0 chr4 126162527 126162560 -29467560 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1547 285 306 0 89 chr4 126162573 126162652 -29467468 - RSINE1 SINE B4 -37 128 57 4 1547 387 282 154 0 chr4 126162620 126162730 -29467390 - B1F2 SINE Alu -21 128 2 4 1547 348 24 0 0 chr4 126162738 126162779 -29467341 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1547 252 0 0 0 chr4 126162779 126162806 -29467314 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1547 279 267 13 0 chr4 126163461 126163536 -29466584 + ID4_ SINE ID 2 77 -6 4 1547 670 241 0 47 chr4 126163554 126163702 -29466418 + B3A SINE B2 3 143 -55 4 1547 529 270 147 26 chr4 126163761 126163993 -29466127 - L1MA8 LINE L1 -208 6083 5824 4 1547 916 206 68 11 chr4 126164046 126164237 -29465883 - B3 SINE B2 -13 203 2 4 1547 398 263 10 20 chr4 126164275 126164376 -29465744 - B1F SINE Alu -3 146 47 4 1547 541 282 16 8 chr4 126164412 126164537 -29465583 + RSINE1 SINE B4 4 129 -36 4 1547 452 205 0 78 chr4 126164517 126164607 -29465513 - B1_Mur3 SINE Alu -66 83 1 4 1547 418 176 16 129 chr4 126165047 126165171 -29464949 + MT2B LTR ERVL 155 264 -337 4 1547 914 121 0 0 chr4 126165065 126165206 -29464914 + B1_Mus2 SINE Alu 7 147 0 4 1547 202 299 172 0 chr4 126165397 126165484 -29464636 + MIRb SINE MIR 26 127 -141 4 1547 236 335 32 60 chr4 126165472 126165659 -29464461 + MIR SINE MIR 31 220 -48 4 1547 1340 44 0 0 chr4 126165691 126165851 -29464269 - B2_Mm2 SINE B2 -35 160 1 4 1547 275 343 61 0 chr4 126165881 126165980 -29464140 + PB1D10 SINE Alu 5 109 -8 4 1547 318 315 0 82 chr4 126166082 126166098 -29464022 - PB1D7 SINE Alu -7 113 105 4 1547 1057 239 109 52 chr4 126166098 126166446 -29463674 + ORR1D2 LTR MaLR 3 370 0 4 1547 318 315 0 82 chr4 126166446 126166526 -29463594 - PB1D7 SINE Alu -16 104 25 4 1547 189 0 0 0 chr4 126169167 126169188 -29460932 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1547 180 0 0 0 chr4 126169438 126169458 -29460662 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1547 186 323 74 21 chr4 126170828 126170923 -29459197 + L2c LINE L2 3076 3175 -200 4 1547 495 0 0 0 chr4 126170960 126171015 -29459105 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1547 3079 62 57 2 chr4 126171015 126171453 -29458667 + MusHAL1 LINE L1 1625 2086 -626 4 1547 217 95 48 0 chr4 126171609 126171651 -29458469 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1547 1171 68 0 0 chr4 126171653 126171800 -29458320 - B1_Mus2 SINE Alu 0 147 1 4 1547 205 203 0 48 chr4 126172223 126172285 -29457835 + A-rich Low_complexity Low_complexity 5 63 0 4 1547 246 272 48 81 chr4 126172456 126172580 -29457540 - PB1D9 SINE Alu 0 120 1 4 1547 217 341 88 61 chr4 126173044 126173272 -29456848 + L2c LINE L2 3154 3387 0 4 1547 22 0 0 0 chr4 126173931 126173953 -29456167 + AT_rich Low_complexity Low_complexity 1 22 0 4 1547 611 200 0 91 chr4 126174708 126174840 -29455280 + PB1D7 SINE Alu 1 120 0 4 1547 358 239 0 68 chr4 126175029 126175130 -29454990 + ID2 SINE ID 2 96 -56 4 1547 433 276 17 33 chr4 126175302 126175553 -29454567 + (TCTCTG)n Simple_repeat Simple_repeat 1 246 0 4 1547 391 295 68 68 chr4 126175988 126176125 -29453995 + MER44A DNA MER2_type 1 141 -198 4 1547 421 289 74 0 chr4 126176125 126176260 -29453860 - B1F SINE Alu -1 148 4 4 1547 391 295 68 68 chr4 126176260 126176373 -29453747 + MER44A DNA MER2_type 142 250 -89 4 1547 295 181 65 12 chr4 126176376 126176627 -29453493 + (TG)n Simple_repeat Simple_repeat 1 264 0 4 1547 1073 17 40 17 chr4 126176877 126177052 -29453068 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1547 761 196 28 0 chr4 126177182 126177325 -29452795 + B1_Mus1 SINE Alu 2 148 0 4 1547 344 304 8 50 chr4 126177623 126177713 -29452407 + PB1D10 SINE Alu 1 91 -26 4 1547 3504 23 5 0 chr4 126177713 126178107 -29452013 - MTA_Mm LTR MaLR 0 396 1 4 1547 344 304 8 50 chr4 126178107 126178137 -29451983 + PB1D10 SINE Alu 92 116 -1 4 1547 240 245 67 19 chr4 126178253 126178357 -29451763 + L1MD3 LINE L1 5861 5969 -2026 4 1547 378 295 15 44 chr4 126178419 126178554 -29451566 + ID_B1 SINE B4 91 221 -3 4 1547 1391 95 5 0 chr4 126178559 126178749 -29451371 + B2_Mm1a SINE B2 2 192 -1 4 1547 3557 45 5 7 chr4 126178852 126179299 -29450821 + L1_Mus2 LINE L1 6121 6566 0 4 1547 774 273 151 21 chr4 126179871 126180208 -29449912 + MLT1I LTR MaLR 1 381 -30 4 1547 824 227 38 28 chr4 126180527 126180740 -29449380 + B3 SINE B2 2 216 0 4 1547 228 247 134 12 chr4 126182636 126182718 -29447402 - PB1 SINE Alu -33 94 3 4 1547 286 265 174 0 chr4 126182753 126182851 -29447269 - Tigger5 DNA MER2_type 0 2406 2292 4 1547 214 179 0 0 chr4 126182988 126183027 -29447093 + B3A SINE B2 1 39 -159 4 1547 477 338 20 25 chr4 126183044 126183247 -29446873 + B4A SINE B4 91 292 0 4 1547 326 164 27 0 chr4 126183290 126183363 -29446757 + (CATA)n Simple_repeat Simple_repeat 2 76 0 4 1547 437 252 158 0 chr4 126183609 126183748 -29446372 + MTEa LTR MaLR 216 376 -3 4 1547 37 81 0 0 chr4 126184773 126184859 -29445261 + AT_rich Low_complexity Low_complexity 1 86 0 4 1547 1149 37 0 0 chr4 126184907 126185043 -29445077 + B1_Mus1 SINE Alu 1 136 -12 4 1547 312 27 0 0 chr4 126185044 126185081 -29445039 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 4 1547 284 279 16 0 chr4 126185115 126185204 -29444916 - ID4 SINE ID -59 93 3 4 1547 673 152 71 21 chr4 126185215 126185356 -29444764 - B1F SINE Alu 0 149 2 4 1547 375 243 50 75 chr4 126185404 126185524 -29444596 - PB1D10 SINE Alu 0 117 1 4 1547 273 378 0 59 chr4 126186437 126186572 -29443548 + MLT1I LTR MaLR 212 338 -73 4 1547 820 268 53 0 chr4 126186572 126186781 -29443339 + ID_B1 SINE B4 2 221 -3 4 1547 871 143 0 0 chr4 126187048 126187181 -29442939 + B1_Mur4 SINE Alu 15 147 -3 4 1547 455 244 0 0 chr4 126187545 126187627 -29442493 - ID4_ SINE ID -1 82 1 4 1547 32 0 0 0 chr4 126187683 126187715 -29442405 + AT_rich Low_complexity Low_complexity 1 32 0 4 1547 744 186 0 0 chr4 126187974 126188098 -29442022 - B1_Mur1 SINE Alu -16 133 10 4 1547 225 204 0 0 chr4 126188781 126188825 -29441295 + A-rich Low_complexity Low_complexity 1 44 0 4 1547 225 0 0 0 chr4 126189174 126189199 -29440921 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1547 270 0 0 0 chr4 126189513 126189543 -29440577 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1547 837 120 14 50 chr4 126189547 126189687 -29440433 - B1_Mur4 SINE Alu -13 137 3 4 1547 800 270 23 32 chr4 126190014 126190232 -29439888 + ID_B1 SINE B4 2 217 -7 4 1547 261 297 14 0 chr4 126190376 126190450 -29439670 + ID4_ SINE ID 2 76 -7 4 1547 22 35 0 0 chr4 126190968 126190997 -29439123 + AT_rich Low_complexity Low_complexity 1 29 0 4 1547 321 281 0 12 chr4 126191007 126191090 -29439030 + PB1D7 SINE Alu 3 84 -36 4 1547 578 271 39 0 chr4 126191107 126191262 -29438858 - B3A SINE B2 -35 163 3 4 1547 288 0 0 0 chr4 126191465 126191497 -29438623 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 4 1547 424 304 20 0 chr4 126191508 126191610 -29438510 + RSINE1 SINE B4 43 146 -19 4 1547 180 0 0 0 chr4 126191625 126191645 -29438475 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1547 415 222 0 13 chr4 126191646 126191801 -29438319 + GA-rich Low_complexity Low_complexity 2 154 0 4 1547 841 265 72 25 chr4 126192307 126192586 -29437534 - B4A SINE B4 0 292 1 4 1547 961 48 0 0 chr4 126192836 126192962 -29437158 - B1_Mus2 SINE Alu -21 126 1 4 1547 502 234 55 0 chr4 126192849 126192977 -29437143 - B4 SINE B4 -88 204 70 5 1547 413 243 63 36 chr4 126192989 126193100 -29437020 - PB1D7 SINE Alu -6 114 1 5 1547 468 91 0 0 chr4 126193226 126193292 -29436828 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1547 691 235 0 0 chr4 126193369 126193501 -29436619 + B1_Mur2 SINE Alu 2 133 -16 5 1547 198 0 0 0 chr4 126193722 126193744 -29436376 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 5 1547 422 262 19 0 chr4 126193744 126193847 -29436273 - PB1D10 SINE Alu -12 105 1 5 1547 550 236 23 8 chr4 126194991 126195119 -29435001 + RSINE1 SINE B4 2 131 -34 5 1547 296 24 24 0 chr4 126195152 126195193 -29434927 + (CATA)n Simple_repeat Simple_repeat 1 42 0 5 1547 191 32 0 61 chr4 126195199 126195232 -29434888 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5 1547 845 260 49 0 chr4 126195240 126195463 -29434657 + L1MB4 LINE L1 5839 6072 -108 5 1547 1055 50 0 21 chr4 126195467 126195610 -29434510 + B2_Mm2 SINE B2 1 140 -55 5 1547 706 221 0 39 chr4 126195578 126195733 -29434387 - B3 SINE B2 -64 152 4 5 1547 744 217 25 6 chr4 126195804 126195966 -29434154 - B3A SINE B2 -33 165 1 5 1547 2254 85 3 0 chr4 126196026 126196345 -29433775 + ORR1A2 LTR MaLR 8 327 0 5 1547 419 297 93 14 chr4 126196367 126196507 -29433613 - RSINE1 SINE B4 -4 161 11 5 1547 366 296 10 0 chr4 126196533 126196631 -29433489 + B3A SINE B2 86 184 -14 5 1547 24 32 0 0 chr4 126196643 126196674 -29433446 + AT_rich Low_complexity Low_complexity 1 31 0 5 1547 297 51 0 0 chr4 126196684 126196723 -29433397 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 5 1547 668 250 0 0 chr4 126196726 126196858 -29433262 - B1_Mur1 SINE Alu -16 133 2 5 1547 594 223 8 0 chr4 126197746 126197867 -29432253 + ID_B1 SINE B4 99 220 -4 5 1547 855 78 0 0 chr4 126197868 126197984 -29432136 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 5 1547 359 0 0 0 chr4 126197984 126198074 -29432046 + L1Md_T LINE L1 6535 6582 0 5 1547 265 314 14 0 chr4 126198107 126198177 -29431943 + RSINE1 SINE B4 67 137 -28 5 1547 222 37 0 0 chr4 126198180 126198207 -29431913 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1547 1371 80 21 5 chr4 126198339 126198528 -29431592 + B2_Mm2 SINE B2 1 192 -3 5 1547 1108 78 0 0 chr4 126198973 126199115 -29431005 + B1_Mus1 SINE Alu 1 142 -6 5 1547 207 0 0 0 chr4 126199119 126199142 -29430978 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1547 489 164 0 0 chr4 126200175 126200291 -29429829 + (TA)n Simple_repeat Simple_repeat 1 116 0 5 1547 1222 35 7 0 chr4 126200343 126200488 -29429632 + B1_Mus2 SINE Alu 2 147 0 5 1547 180 0 0 0 chr4 126200488 126200508 -29429612 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1547 384 71 0 0 chr4 126200516 126200572 -29429548 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1547 423 252 202 0 chr4 126200588 126200707 -29429413 - B3A SINE B2 -55 143 1 5 1547 414 0 0 0 chr4 126200939 126200985 -29429135 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 1547 259 303 15 0 chr4 126201051 126201117 -29429003 - ID4_ SINE ID -16 67 1 5 1547 327 25 0 0 chr4 126201308 126201348 -29428772 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1547 206 119 48 0 chr4 126201380 126201422 -29428698 + CT-rich Low_complexity Low_complexity 2 45 0 5 1547 1241 48 0 0 chr4 126201424 126201571 -29428549 - B1_Mus1 SINE Alu 0 148 2 5 1547 260 315 63 32 chr4 126202058 126202248 -29427872 + L2 LINE L2 2232 2427 -992 5 1547 332 220 151 21 chr4 126202281 126202374 -29427746 + B3A SINE B2 45 149 -49 5 1547 243 0 0 0 chr4 126202378 126202405 -29427715 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1547 256 230 17 46 chr4 126202435 126202526 -29427594 + PB1D10 SINE Alu 37 120 -7 5 1547 875 197 67 6 chr4 126203541 126203720 -29426400 + B3 SINE B2 15 204 -12 5 1547 313 200 57 0 chr4 126203781 126203851 -29426269 - B3A SINE B2 -66 132 59 5 1547 407 287 10 0 chr4 126203973 126204074 -29426046 + RSINE1 SINE B4 2 103 -62 5 1547 306 73 0 0 chr4 126204087 126204128 -29425992 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1547 1217 192 0 0 chr4 126204149 126204357 -29425763 + B3 SINE B2 1 208 -8 5 1547 29 28 0 0 chr4 126204364 126204400 -29425720 + AT_rich Low_complexity Low_complexity 1 36 0 5 1547 393 215 226 0 chr4 126204405 126204498 -29425622 + PB1D9 SINE Alu 1 114 -6 5 1547 939 203 76 5 chr4 126204582 126204780 -29425340 - B3 SINE B2 0 216 5 5 1547 288 208 0 0 chr4 126204831 126204884 -29425236 - B4A SINE B4 -204 88 36 5 1547 206 273 14 43 chr4 126204970 126205039 -29425081 + CT-rich Low_complexity Low_complexity 1 67 0 5 1547 362 247 75 11 chr4 126205543 126205637 -29424483 + RSINE1 SINE B4 3 102 -63 5 1547 1204 34 7 7 chr4 126205676 126205824 -29424296 - B1_Mus1 SINE Alu 0 148 1 5 1547 180 0 0 0 chr4 126206462 126206482 -29423638 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1547 906 79 93 0 chr4 126206484 126206624 -29423496 + B2_Mm2 SINE B2 2 154 -41 5 1547 180 77 0 0 chr4 126206625 126206651 -29423469 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 5 1547 1158 83 0 0 chr4 126206747 126206891 -29423229 + B1_Mus1 SINE Alu 1 144 -4 5 1547 567 314 47 55 chr4 126206968 126207224 -29422896 + MIR SINE MIR 8 261 -1 5 1547 250 275 143 0 chr4 126207463 126207554 -29422566 + MIRc SINE MIR 104 207 -61 5 1547 303 280 112 0 chr4 126207624 126207731 -29422389 - PB1D7 SINE Alu -1 119 1 5 1547 1287 176 24 5 chr4 126207775 126207986 -29422134 - B3 SINE B2 0 216 2 5 1547 226 194 188 29 chr4 126208023 126208092 -29422028 + ID4 SINE ID 2 81 -2 5 1547 354 276 46 0 chr4 126209120 126209207 -29420913 - PB1D10 SINE Alu -26 91 1 5 1547 557 280 0 7 chr4 126209215 126209359 -29420761 - ID_B1 SINE B4 0 224 82 5 1547 31 26 0 0 chr4 126210561 126210599 -29419521 + GC_rich Low_complexity Low_complexity 1 38 0 5 1547 35 0 0 0 chr4 126210706 126210741 -29419379 + GC_rich Low_complexity Low_complexity 1 35 0 5 1547 22 0 0 0 chr4 126210847 126210869 -29419251 + GC_rich Low_complexity Low_complexity 1 22 0 5 1547 237 261 0 0 chr4 126210889 126210958 -29419162 + (CCCG)n Simple_repeat Simple_repeat 2 70 0 5 1547 375 259 127 40 chr4 126211402 126211575 -29418545 - MLT1B LTR MaLR -5 385 198 5 1547 854 192 81 20 chr4 126211622 126211819 -29418301 - B3 SINE B2 -7 209 1 5 1547 214 213 64 0 chr4 126211841 126211888 -29418232 + RSINE1 SINE B4 12 61 -104 5 1547 390 202 153 41 chr4 126211971 126212069 -29418051 + B1_Mur2 SINE Alu 21 129 -20 5 1547 590 207 0 22 chr4 126212131 126212314 -29417806 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1547 509 191 9 0 chr4 126212313 126212423 -29417697 + A-rich Low_complexity Low_complexity 5 115 0 5 1547 233 218 55 0 chr4 126212504 126212559 -29417561 - PB1D7 SINE Alu -2 118 61 5 1547 499 248 62 31 chr4 126212510 126212639 -29417481 - ID_B1 SINE B4 -8 216 84 5 1547 504 313 73 12 chr4 126212707 126212871 -29417249 - B3A SINE B2 -14 202 29 5 1547 216 0 0 0 chr4 126212871 126212895 -29417225 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1547 1190 36 0 0 chr4 126212895 126213033 -29417087 - B1_Mus1 SINE Alu -10 138 1 5 1547 445 63 0 0 chr4 126213089 126213152 -29416968 + B1_Mus2 SINE Alu 2 64 -83 5 1547 1431 68 10 5 chr4 126213156 126213348 -29416772 - B2_Mm1t SINE B2 0 193 1 5 1547 306 67 0 0 chr4 126213355 126213400 -29416720 + (TTTTTA)n Simple_repeat Simple_repeat 4 48 0 5 1547 651 83 0 0 chr4 126213410 126213506 -29416614 - B1_Mus2 SINE Alu 0 147 52 5 1547 548 28 0 0 chr4 126213515 126213587 -29416533 + B1_Mur4 SINE Alu 79 150 0 5 1547 971 218 67 10 chr4 126213689 126213897 -29416223 + ID_B1 SINE B4 2 221 -3 5 1547 203 0 37 0 chr4 126214817 126214844 -29415276 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 5 1547 256 239 189 22 chr4 126214844 126214934 -29415186 - PB1D10 SINE Alu -12 105 1 5 1547 1520 204 93 5 chr4 126215007 126215392 -29414728 + MTD LTR MaLR 1 419 0 5 1547 24 32 0 0 chr4 126215505 126215536 -29414584 + AT_rich Low_complexity Low_complexity 1 31 0 5 1547 2229 90 132 11 chr4 126215696 126216044 -29414076 + RLTR10 LTR ERVK 1 390 0 5 1547 755 125 85 35 chr4 126216052 126216193 -29413927 - B1_Mur2 SINE Alu -1 148 1 5 1547 1256 239 84 12 chr4 126216193 126216536 -29413584 - L1MB7 LINE L1 -43 6141 5774 5 1547 736 224 81 25 chr4 126216553 126216750 -29413370 + B3 SINE B2 4 211 -5 5 1547 274 273 0 0 chr4 126216785 126216840 -29413280 + ID_B1 SINE B4 169 223 -1 5 1547 356 300 177 0 chr4 126216881 126217011 -29413109 - RSINE1 SINE B4 -8 157 5 5 1547 415 252 0 39 chr4 126217044 126217172 -29412948 - L1MB7 LINE L1 -471 5713 5591 5 1547 288 161 0 0 chr4 126217254 126217316 -29412804 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1547 933 274 65 14 chr4 126217316 126217594 -29412526 - B4 SINE B4 0 292 1 5 1547 239 204 56 0 chr4 126217597 126217651 -29412469 - B1F SINE Alu 0 149 93 5 1547 2120 114 0 6 chr4 126217654 126217973 -29412147 - ORR1A2 LTR MaLR -8 319 3 5 1547 192 97 0 0 chr4 126218326 126218357 -29411763 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1547 255 288 23 4 chr4 126218357 126218448 -29411672 - PB1D9 SINE Alu -51 98 3 6 1547 569 289 21 0 chr4 126218744 126218886 -29411234 + RSINE1 SINE B4 4 148 -17 6 1547 836 204 62 5 chr4 126219383 126219575 -29410545 - B3 SINE B2 -7 209 7 6 1547 528 269 132 31 chr4 126219699 126220025 -29410095 - HAL1 LINE L1 -873 1634 1276 6 1547 875 255 5 23 chr4 126220040 126220257 -29409863 - ID_B1 SINE B4 0 224 12 6 1547 285 236 100 54 chr4 126220450 126220580 -29409540 - L2 LINE L2 -417 3002 2867 6 1547 261 0 0 0 chr4 126220601 126220630 -29409490 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1547 987 205 42 9 chr4 126220659 126220876 -29409244 + ID_B1 SINE B4 1 224 0 6 1547 568 309 36 0 chr4 126220893 126221061 -29409059 + B3A SINE B2 4 177 -21 6 1547 508 159 0 18 chr4 126221089 126221134 -29408986 + polypurine Low_complexity Low_complexity 1 44 0 6 1547 1275 35 35 0 chr4 126221134 126221308 -29408812 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1547 508 159 0 18 chr4 126221308 126221371 -29408749 + polypurine Low_complexity Low_complexity 45 106 0 6 1547 349 335 52 6 chr4 126221394 126221568 -29408552 + MLT1C LTR MaLR 1 182 -285 6 1547 781 146 13 65 chr4 126221573 126221727 -29408393 + B1_Mur2 SINE Alu 3 148 -1 6 1547 264 91 0 0 chr4 126221738 126221782 -29408338 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1547 329 350 7 28 chr4 126222045 126222189 -29407931 - L2 LINE L2 -727 2692 2552 6 1548 240 300 122 0 chr4 126222352 126222392 -29407728 - PB1D10 SINE Alu -13 104 4 6 1548 242 220 0 0 chr4 126222392 126222442 -29407678 - B4A SINE B4 -154 138 89 6 1548 412 194 8 122 chr4 126222428 126222551 -29407569 + B3A SINE B2 90 198 0 6 1548 380 301 10 0 chr4 126222566 126222669 -29407451 + PB1D10 SINE Alu 6 109 -8 6 1548 209 179 0 0 chr4 126222964 126223003 -29407117 + C-rich Low_complexity Low_complexity 1 39 0 6 1548 285 29 0 0 chr4 126223850 126223884 -29406236 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1548 224 125 0 70 chr4 126223885 126223928 -29406192 - ID SINE ID -184 40 1 6 1548 700 240 0 52 chr4 126223934 126224088 -29406032 - ID_B1 SINE B4 0 224 79 6 1548 260 309 37 0 chr4 126224124 126224205 -29405915 - MIR SINE MIR -63 199 116 6 1548 1569 49 0 0 chr4 126224205 126224389 -29405731 + B2_Mm1a SINE B2 1 184 -9 6 1548 261 0 0 0 chr4 126224396 126224425 -29405695 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 1548 1190 68 0 0 chr4 126224432 126224579 -29405541 + B1_Mus2 SINE Alu 1 147 0 6 1548 213 65 0 0 chr4 126224579 126224610 -29405510 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1548 1106 285 14 3 chr4 126224627 126224893 -29405227 + B4A SINE B4 1 269 -23 6 1548 474 88 0 0 chr4 126224893 126224961 -29405159 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1548 1106 285 14 3 chr4 126224961 126224983 -29405137 + B4A SINE B4 270 291 -1 6 1548 360 344 0 16 chr4 126225005 126225129 -29404991 + L1MEg LINE L1 1084 1205 -4879 6 1548 1315 129 24 29 chr4 126225132 126225339 -29404781 + B3 SINE B2 11 216 0 6 1548 347 273 0 13 chr4 126225374 126225452 -29404668 + ID4 SINE ID 5 81 -2 6 1548 249 222 0 18 chr4 126225832 126225887 -29404233 + (ATG)n Simple_repeat Simple_repeat 1 54 0 6 1548 180 388 57 16 chr4 126225916 126226039 -29404081 - MIRb SINE MIR -139 129 2 6 1548 23 0 0 0 chr4 126226312 126226335 -29403785 + AT_rich Low_complexity Low_complexity 1 23 0 6 1548 553 261 71 18 chr4 126226387 126226555 -29403565 - LTR82B Low_complexity ERVL -91 739 563 6 1548 2063 124 19 89 chr4 126226550 126226922 -29403198 - ORR1B1 LTR MaLR -8 386 41 6 1548 624 371 75 46 chr4 126226950 126227109 -29403011 - LTR82B Low_complexity ERVL -276 554 390 6 1548 1420 74 0 21 chr4 126227109 126227303 -29402817 + B2_Mm2 SINE B2 3 192 -3 6 1548 624 371 75 46 chr4 126227303 126227558 -29402562 - LTR82B Low_complexity ERVL -441 389 128 6 1548 461 182 10 0 chr4 126227590 126227689 -29402431 + CT-rich Low_complexity Low_complexity 1 100 0 6 1548 506 326 41 15 chr4 126227689 126227885 -29402235 - ID_B1 SINE B4 -1 223 23 6 1548 376 286 16 63 chr4 126227850 126227977 -29402143 - LTR82B Low_complexity ERVL -661 169 49 6 1548 606 93 0 0 chr4 126228139 126228225 -29401895 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 6 1548 225 119 0 0 chr4 126229082 126229124 -29400996 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1548 720 248 27 7 chr4 126229124 126229270 -29400850 - B3A SINE B2 -48 150 2 6 1548 1196 55 0 0 chr4 126229665 126229811 -29400309 - B1_Mus1 SINE Alu -1 147 2 6 1548 185 0 0 39 chr4 126229832 126229858 -29400262 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 1548 1241 71 0 0 chr4 126229859 126230013 -29400107 - B2_Mm2 SINE B2 -41 154 1 6 1548 252 342 125 52 chr4 126230075 126230498 -29399622 + L2 LINE L2 2562 3015 -404 6 1548 280 43 0 42 chr4 126230923 126230971 -29399149 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1548 1348 82 22 0 chr4 126231053 126231236 -29398884 - B2_Mm2 SINE B2 -5 190 4 6 1548 944 120 11 22 chr4 126231270 126231449 -29398671 + CT-rich Low_complexity Low_complexity 2 178 0 6 1548 335 239 304 0 chr4 126231732 126231824 -29398296 + B3A SINE B2 4 123 -75 6 1548 180 0 0 0 chr4 126231903 126231923 -29398197 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1548 213 303 29 43 chr4 126232078 126232147 -29397973 + ID4 SINE ID 6 73 -10 6 1548 216 302 78 16 chr4 126232095 126232159 -29397961 + ID_B1 SINE B4 24 91 -133 6 1548 279 0 0 0 chr4 126232307 126232338 -29397782 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 6 1548 231 36 0 0 chr4 126232338 126232365 -29397755 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1548 270 0 0 0 chr4 126232365 126232394 -29397726 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1548 490 261 14 95 chr4 126232412 126232560 -29397560 - RSINE1 SINE B4 -26 139 4 6 1548 1155 202 9 5 chr4 126232651 126232865 -29397255 - B3 SINE B2 0 216 2 6 1548 324 222 0 80 chr4 126233222 126233310 -29396810 - ID4 SINE ID -1 82 2 6 1548 415 210 12 12 chr4 126233431 126233513 -29396607 - MER81 DNA AcHobo -32 82 1 6 1548 356 382 23 79 chr4 126233556 126233772 -29396348 - LTR33 LTR ERVL -293 222 19 6 1548 270 0 0 0 chr4 126234691 126234721 -29395399 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1548 238 284 111 76 chr4 126234952 126235037 -29395083 + MER96B DNA hAT 3 89 -328 6 1548 234 0 0 0 chr4 126235037 126235063 -29395057 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1548 1117 56 28 0 chr4 126235071 126235214 -29394906 - B1_Mus2 SINE Alu 0 147 1 6 1548 238 284 111 76 chr4 126235214 126235317 -29394803 + MER96B DNA hAT 99 206 -211 6 1548 312 27 0 0 chr4 126235406 126235443 -29394677 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 6 1548 192 40 0 0 chr4 126235518 126235543 -29394577 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1548 518 326 28 0 chr4 126235554 126235695 -29394425 + RSINE1 SINE B4 2 146 -19 6 1548 968 223 69 0 chr4 126235744 126235946 -29394174 + B3 SINE B2 1 216 0 6 1548 21 0 0 0 chr4 126235948 126235969 -29394151 + AT_rich Low_complexity Low_complexity 1 21 0 6 1548 785 240 77 0 chr4 126235969 126236152 -29393968 + B3 SINE B2 1 197 -19 6 1548 30 27 0 0 chr4 126236678 126236715 -29393405 + AT_rich Low_complexity Low_complexity 1 37 0 6 1548 32 43 0 0 chr4 126236779 126236825 -29393295 + AT_rich Low_complexity Low_complexity 1 46 0 6 1548 960 143 7 7 chr4 126237633 126237781 -29392339 - B1_Mur4 SINE Alu -2 148 1 6 1548 1121 90 0 7 chr4 126238255 126238401 -29391719 + B1_Mur4 SINE Alu 2 146 -4 6 1548 216 0 0 0 chr4 126238403 126238427 -29391693 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1548 1272 73 11 22 chr4 126238427 126238440 -29391680 - B2_Mm2 SINE B2 -14 181 170 6 1548 1204 68 0 0 chr4 126238440 126238588 -29391532 + B1_Mus1 SINE Alu 1 148 0 6 1548 1272 73 11 22 chr4 126238588 126238756 -29391364 - B2_Mm2 SINE B2 -26 169 2 6 1548 811 191 53 0 chr4 126239258 126239410 -29390710 - B3 SINE B2 -10 206 47 6 1548 370 273 291 54 chr4 126239414 126239638 -29390482 + B4A SINE B4 14 290 -2 6 1548 742 189 202 33 chr4 126239706 126239897 -29390223 - MTD LTR MaLR 0 419 191 6 1548 186 43 0 0 chr4 126239897 126239920 -29390200 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 6 1548 742 189 202 33 chr4 126239920 126239941 -29390179 - MTD LTR MaLR -229 190 171 6 1548 2351 127 35 44 chr4 126239942 126240347 -29389773 - Lx4B LINE L1 -53 7005 6605 6 1548 924 230 14 14 chr4 126240347 126240554 -29389566 - MTD LTR MaLR -210 209 3 6 1548 591 250 6 100 chr4 126240603 126240763 -29389357 - B3 SINE B2 -5 211 67 6 1548 327 237 135 31 chr4 126240901 126240997 -29389123 + PB1D10 SINE Alu 3 108 -9 6 1548 364 253 0 24 chr4 126241006 126241091 -29389029 + ID4 SINE ID 1 83 0 6 1548 230 98 111 56 chr4 126241424 126241478 -29388642 - B3 SINE B2 -10 206 150 6 1548 266 183 67 0 chr4 126241492 126241552 -29388568 - B3 SINE B2 -2 214 151 6 1548 1211 54 7 0 chr4 126241566 126241713 -29388407 - B1_Mus1 SINE Alu 0 148 1 6 1548 1066 190 19 38 chr4 126241737 126241950 -29388170 - B3 SINE B2 0 216 8 6 1548 428 237 100 106 chr4 126242507 126242677 -29387443 - B3A SINE B2 -2 196 28 6 1548 238 238 0 0 chr4 126243653 126243695 -29386425 + (CGG)n Simple_repeat Simple_repeat 3 44 0 6 1548 625 250 0 29 chr4 126244413 126244549 -29385571 + B3A SINE B2 1 132 -66 6 1548 665 215 209 0 chr4 126244551 126244714 -29385406 - ID_B1 SINE B4 -20 204 8 6 1548 385 271 50 1 chr4 126244755 126244865 -29385255 - PB1D10 SINE Alu 0 127 3 6 1548 604 243 7 21 chr4 126245170 126245313 -29384807 - B1_Mur2 SINE Alu -5 144 4 6 1548 717 166 27 33 chr4 126245759 126245909 -29384211 + B1_Mur1 SINE Alu 1 149 0 7 1548 189 320 79 55 chr4 126246047 126246212 -29383908 - L2c LINE L2 -66 3321 3153 7 1548 250 0 0 0 chr4 126246259 126246290 -29383830 + RMER4B LTR ERVK 17 47 -538 7 1548 1197 61 0 0 chr4 126246290 126246437 -29383683 + B1_Mus2 SINE Alu 1 147 0 7 1548 1312 216 94 57 chr4 126246464 126246936 -29383184 + RMER4B LTR ERVK 38 585 0 7 1548 537 290 22 7 chr4 126247255 126247394 -29382726 + B1F2 SINE Alu 2 142 -7 7 1548 825 220 52 0 chr4 126247411 126247584 -29382536 + B3A SINE B2 1 182 -16 7 1548 272 274 92 28 chr4 126248314 126248423 -29381697 + PB1D10 SINE Alu 2 117 0 7 1548 1169 68 0 26 chr4 126248504 126248656 -29381464 - B1_Mus1 SINE Alu 0 148 1 7 1548 672 218 83 54 chr4 126248687 126248891 -29381229 - B3 SINE B2 -5 211 2 7 1548 731 201 14 7 chr4 126248904 126249044 -29381076 - B1_Mur1 SINE Alu -6 143 3 7 1548 488 226 103 0 chr4 126249143 126249289 -29380831 + RSINE1 SINE B4 3 163 -2 7 1548 285 193 123 0 chr4 126249916 126249973 -29380147 + PB1D7 SINE Alu 1 64 -56 7 1548 257 254 0 15 chr4 126250056 126250124 -29379996 - ID2 SINE ID -3 80 14 7 1548 212 225 0 36 chr4 126250492 126250575 -29379545 + GA-rich Low_complexity Low_complexity 2 81 0 7 1548 625 209 218 11 chr4 126250655 126250834 -29379286 - B3 SINE B2 0 216 1 7 1548 369 62 0 0 chr4 126250848 126250896 -29379224 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1548 651 227 7 54 chr4 126251536 126251685 -29378435 + B1_Mur1 SINE Alu 1 142 -7 7 1548 385 209 299 7 chr4 126252117 126252271 -29377849 - B3 SINE B2 -16 200 2 7 1548 682 235 126 16 chr4 126252588 126252778 -29377342 - B3 SINE B2 -1 215 5 7 1548 1330 262 34 6 chr4 126254178 126254535 -29375585 - MTEb LTR MaLR -1 378 12 7 1548 604 256 30 24 chr4 126254598 126254762 -29375358 - RSINE1 SINE B4 0 165 1 7 1548 228 283 168 20 chr4 126255352 126255453 -29374667 + L2b LINE L2 3260 3375 0 7 1548 368 230 0 91 chr4 126255711 126255821 -29374299 + MT2B LTR ERVL 152 251 -350 7 1548 534 189 18 0 chr4 126255731 126255842 -29374278 + PB1D9 SINE Alu 6 118 -2 7 1548 330 240 27 0 chr4 126255988 126256063 -29374057 + L1MB3 LINE L1 5561 5637 -546 7 1548 454 259 51 8 chr4 126256184 126256301 -29373819 + RSINE1 SINE B4 4 125 -40 7 1548 1740 125 71 81 chr4 126256517 126256575 -29373545 - MTC LTR MaLR 0 421 380 7 1548 1348 68 23 6 chr4 126256575 126256752 -29373368 + B2_Mm2 SINE B2 2 181 -14 7 1548 1740 125 71 81 chr4 126256752 126257013 -29373107 - MTC LTR MaLR -42 379 105 7 1548 725 235 37 30 chr4 126257013 126257207 -29372913 + B3 SINE B2 1 192 -1 7 1548 775 128 26 0 chr4 126257200 126257317 -29372803 - MTC LTR MaLR -301 120 1 7 1548 518 176 53 44 chr4 126257366 126257479 -29372641 - B1F SINE Alu -1 148 35 7 1548 451 273 109 11 chr4 126257492 126257696 -29372424 + L1MB3 LINE L1 5807 6034 -134 7 1548 820 191 0 20 chr4 126257750 126257900 -29372220 - B1_Mur1 SINE Alu 0 149 3 7 1548 342 370 34 14 chr4 126257904 126258052 -29372068 - B4 SINE B4 -116 176 26 7 1548 437 187 32 32 chr4 126258464 126258558 -29371562 + PB1D10 SINE Alu 21 114 -3 7 1548 419 333 26 13 chr4 126258902 126259054 -29371066 + RSINE1 SINE B4 2 155 -10 7 1548 1195 48 0 20 chr4 126259100 126259250 -29370870 - B1_Mus2 SINE Alu 0 147 1 7 1548 26 0 0 0 chr4 126259575 126259601 -29370519 + AT_rich Low_complexity Low_complexity 1 26 0 7 1548 282 219 125 0 chr4 126259646 126259710 -29370410 + ID4_ SINE ID 2 73 -10 7 1548 266 0 29 0 chr4 126259727 126259761 -29370359 + (TGGG)n Simple_repeat Simple_repeat 4 38 0 7 1548 333 250 40 0 chr4 126259790 126259866 -29370254 + ID4 SINE ID 1 79 -4 7 1548 235 209 0 0 chr4 126259869 126259912 -29370208 + GA-rich Low_complexity Low_complexity 2 44 0 7 1548 323 301 119 12 chr4 126260104 126260272 -29369848 - L3 LINE CR1 -719 3770 3585 7 1548 1159 55 21 0 chr4 126260347 126260492 -29369628 + B1_Mus1 SINE Alu 1 148 0 7 1548 213 39 0 0 chr4 126260492 126260518 -29369602 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1548 420 202 196 29 chr4 126260651 126260753 -29369367 + B1_Mur2 SINE Alu 1 148 -1 7 1548 416 207 34 11 chr4 126261235 126261323 -29368797 + RSINE1 SINE B4 2 91 -74 7 1548 833 220 76 16 chr4 126261394 126261579 -29368541 + B3 SINE B2 2 197 -19 7 1548 1648 26 11 0 chr4 126262327 126262518 -29367602 - B2_Mm1a SINE B2 0 193 1 7 1548 3476 129 158 76 chr4 126263642 126264494 -29365626 - RLTR25B LTR ERVK 0 1103 1 7 1548 241 361 59 15 chr4 126264480 126264491 -29365629 + B1_Mus1 SINE Alu 1 39 -109 7 1548 362 323 10 0 chr4 126264491 126264590 -29365530 + ID_B1 SINE B4 90 189 -35 7 1548 241 361 59 15 chr4 126264590 126264615 -29365505 + B1_Mus1 SINE Alu 40 141 -7 7 1548 207 0 0 0 chr4 126265058 126265081 -29365039 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1548 372 224 0 0 chr4 126265149 126265216 -29364904 + PB1D9 SINE Alu 6 72 -48 7 1548 4550 88 5 25 chr4 126265228 126265869 -29364251 - RLTR5_Mm LTR ERV1 0 628 1 7 1548 703 258 12 19 chr4 126265890 126266052 -29364068 - B3A SINE B2 -31 167 7 7 1548 260 314 0 11 chr4 126266067 126266244 -29363876 + CT-rich Low_complexity Low_complexity 2 176 0 7 1548 281 331 0 0 chr4 126266076 126266203 -29363917 + (CCCA)n Simple_repeat Simple_repeat 2 128 0 7 1548 297 282 6 17 chr4 126266311 126266488 -29363632 + CT-rich Low_complexity Low_complexity 2 176 0 7 1548 245 278 11 23 chr4 126266513 126266690 -29363430 + CT-rich Low_complexity Low_complexity 2 176 0 7 1548 201 305 13 13 chr4 126266698 126266851 -29363269 + (CACTC)n Simple_repeat Simple_repeat 3 155 0 7 1548 331 226 10 92 chr4 126266858 126267053 -29363067 + CT-rich Low_complexity Low_complexity 2 180 0 7 1548 715 154 49 0 chr4 126267219 126267342 -29362778 - B1_Mur2 SINE Alu 0 149 21 7 1548 1421 153 0 5 chr4 126267348 126267565 -29362555 - B3 SINE B2 0 216 1 7 1548 398 193 198 15 chr4 126267618 126267731 -29362389 - B1F SINE Alu 0 117 1 7 1548 830 228 38 59 chr4 126269046 126269262 -29360858 - B3 SINE B2 -24 192 1 7 1548 249 224 30 0 chr4 126269293 126269360 -29360760 + (TGGG)n Simple_repeat Simple_repeat 4 72 0 7 1548 352 308 104 54 chr4 126269360 126269638 -29360482 + B4 SINE B4 1 292 0 7 1548 1048 66 7 0 chr4 126271603 126271739 -29358381 + B2_Mm2 SINE B2 1 137 -58 7 1548 600 310 62 0 chr4 126271849 126271994 -29358126 - RSINE1 SINE B4 0 165 12 7 1548 625 245 99 31 chr4 126272009 126272232 -29357888 - RLTR15 LTR ERVK -36 323 86 7 1548 829 146 0 74 chr4 126272744 126272892 -29357228 - B1_Mur3 SINE Alu 0 149 13 7 1548 1180 30 0 0 chr4 126272893 126273027 -29357093 + B1_Mm SINE Alu 2 135 -12 7 1548 2949 32 12 0 chr4 126273028 126273374 -29356746 + MERVL-int LTR ERVL 4885 5234 -251 7 1548 463 270 84 18 chr4 126273389 126273555 -29356565 + B3A SINE B2 20 196 -2 7 1548 320 316 78 44 chr4 126273662 126273867 -29356253 + L2 LINE L2 2639 2850 -569 7 1548 233 310 42 0 chr4 126273874 126273945 -29356175 + ID4_ SINE ID 8 81 -2 7 1548 402 295 80 24 chr4 126273889 126274014 -29356106 + ID_B1 SINE B4 24 155 -69 7 1548 382 220 10 52 chr4 126273955 126274051 -29356069 + PB1D9 SINE Alu 19 110 -10 7 1548 847 120 0 8 chr4 126274052 126274178 -29355942 + B2_Mm2 SINE B2 1 125 -70 7 1548 301 127 109 0 chr4 126274168 126274223 -29355897 + B2_Mm2 SINE B2 75 135 -60 7 1548 288 0 0 0 chr4 126274273 126274305 -29355815 + (CATA)n Simple_repeat Simple_repeat 2 33 0 7 1548 264 127 0 0 chr4 126274312 126274367 -29355753 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1548 1252 28 0 0 chr4 126274370 126274513 -29355607 - B1_Mus1 SINE Alu -5 143 1 7 1548 269 194 254 0 chr4 126274518 126274585 -29355535 + B3 SINE B2 15 98 -118 7 1548 511 257 34 34 chr4 126274608 126274757 -29355363 - B1F SINE Alu 0 149 1 7 1548 423 0 0 0 chr4 126275811 126275858 -29354262 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1548 422 170 111 19 chr4 126275998 126276106 -29354014 - PB1D9 SINE Alu 0 120 3 7 1548 273 304 174 0 chr4 126276528 126276666 -29353454 + MIRb SINE MIR 99 260 -8 7 1548 562 314 122 7 chr4 126276870 126277149 -29352971 + LTR16A LTR ERVL 65 375 -76 7 1548 213 236 55 0 chr4 126277176 126277231 -29352889 - B1F SINE Alu -1 148 91 7 1548 265 271 90 135 chr4 126277185 126277256 -29352864 - ID_B1 SINE B4 -10 214 3 7 1548 1023 119 13 0 chr4 126277256 126277407 -29352713 - B2_Mm1a SINE B2 -38 155 3 7 1548 307 271 0 86 chr4 126277407 126277496 -29352624 - PB1D10 SINE Alu -36 81 1 7 1548 342 238 74 12 chr4 126277419 126277500 -29352620 - ID_B1 SINE B4 -73 151 66 7 1548 324 295 84 19 chr4 126277546 126277653 -29352467 - PB1D9 SINE Alu -1 119 6 7 1548 29 47 0 0 chr4 126278193 126278236 -29351884 + AT_rich Low_complexity Low_complexity 1 43 0 7 1548 691 267 0 103 chr4 126278317 126278530 -29351590 + B3 SINE B2 1 191 -25 7 1548 270 0 0 0 chr4 126278680 126278710 -29351410 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7 1548 1003 67 89 0 chr4 126278766 126278901 -29351219 - B1_Mus1 SINE Alu 0 148 2 7 1548 198 0 0 0 chr4 126279155 126279177 -29350943 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1548 226 200 0 0 chr4 126279178 126279218 -29350902 + C-rich Low_complexity Low_complexity 1 40 0 7 1548 257 120 0 74 chr4 126280227 126280281 -29349839 + B1_Mus2 SINE Alu 98 147 0 8 1548 255 264 130 11 chr4 126280354 126280446 -29349674 + RSINE1 SINE B4 35 137 -28 8 1548 555 174 67 80 chr4 126280662 126280812 -29349308 + B1_Mur2 SINE Alu 2 149 0 8 1548 796 167 72 0 chr4 126280856 126280994 -29349126 - B1_Mur3 SINE Alu -1 148 1 8 1548 26 0 0 0 chr4 126280997 126281023 -29349097 + AT_rich Low_complexity Low_complexity 1 26 0 8 1548 1155 95 0 0 chr4 126281023 126281170 -29348950 - B1_Mus1 SINE Alu 0 148 2 8 1548 267 212 183 24 chr4 126281218 126281300 -29348820 + ZP3AR Satellite Satellite 6 100 -112 8 1548 313 220 0 0 chr4 126281249 126281308 -29348812 + ID4_ SINE ID 2 60 -23 8 1548 1236 22 0 0 chr4 126281980 126282118 -29348002 - B1_Mus2 SINE Alu -8 139 2 8 1548 1634 31 0 15 chr4 126282138 126282334 -29347786 - B2_Mm1a SINE B2 0 193 1 8 1548 896 206 43 158 chr4 126282901 126283002 -29347118 - B4A SINE B4 0 292 232 8 1548 832 249 30 5 chr4 126283002 126283204 -29346916 - B3 SINE B2 -6 210 4 8 1548 896 206 43 158 chr4 126283204 126283430 -29346690 - B4A SINE B4 -61 231 3 8 1548 743 193 0 110 chr4 126283914 126284077 -29346043 - B1_Mur1 SINE Alu -2 147 3 8 1548 300 284 67 22 chr4 126284103 126284193 -29345927 + B1F2 SINE Alu 1 94 -55 8 1548 27 0 0 0 chr4 126284283 126284310 -29345810 + AT_rich Low_complexity Low_complexity 1 27 0 8 1548 789 214 67 67 chr4 126284310 126284520 -29345600 - B3 SINE B2 -5 211 2 8 1548 593 203 175 7 chr4 126284553 126284707 -29345413 - B3 SINE B2 0 216 37 8 1548 198 103 0 0 chr4 126284862 126284891 -29345229 + (TATG)n Simple_repeat Simple_repeat 3 31 0 8 1548 198 103 0 0 chr4 126284912 126284941 -29345179 + (TATG)n Simple_repeat Simple_repeat 3 31 0 8 1548 352 201 7 34 chr4 126284962 126285111 -29345009 + (TATG)n Simple_repeat Simple_repeat 3 147 0 8 1548 198 103 0 0 chr4 126285132 126285161 -29344959 + (TATG)n Simple_repeat Simple_repeat 3 31 0 8 1548 430 165 0 19 chr4 126285188 126285293 -29344827 + (TATG)n Simple_repeat Simple_repeat 3 105 0 8 1548 282 241 24 24 chr4 126285335 126285420 -29344700 + MERVL_2A-int LTR ERVL 4913 4997 -764 8 1548 569 327 69 14 chr4 126285550 126285826 -29344294 - RMER15 LTR ERVL -8 567 277 8 1548 889 170 0 20 chr4 126286334 126286484 -29343636 + B1_Mur2 SINE Alu 2 148 -1 8 1548 1525 49 27 0 chr4 126286556 126286740 -29343380 + B2_Mm1a SINE B2 1 189 -4 8 1548 554 0 15 0 chr4 126287558 126287624 -29342496 + (TGG)n Simple_repeat Simple_repeat 2 68 0 8 1548 516 75 0 0 chr4 126287826 126287893 -29342227 + B1_Mus2 SINE Alu 1 67 -80 8 1548 976 128 0 7 chr4 126287893 126288035 -29342085 - B1_Mus1 SINE Alu -7 141 1 8 1548 386 192 0 0 chr4 126288035 126288113 -29342007 - URR1B DNA MER1_type -81 144 67 8 1548 488 295 95 18 chr4 126288234 126288403 -29341717 - B3A SINE B2 -16 182 1 8 1548 260 297 73 13 chr4 126288626 126288776 -29341344 - L2 LINE L2 -1003 2416 2258 8 1548 266 343 6 18 chr4 126289719 126289888 -29340232 + (TATG)n Simple_repeat Simple_repeat 3 169 0 8 1548 21 0 0 0 chr4 126290268 126290289 -29339831 + AT_rich Low_complexity Low_complexity 1 21 0 8 1548 413 259 0 0 chr4 126290316 126290397 -29339723 - ID4 SINE ID -2 81 1 8 1548 754 164 8 8 chr4 126290545 126290674 -29339446 + B1_Mus2 SINE Alu 1 129 -18 8 1548 770 176 7 0 chr4 126290677 126290830 -29339290 + GA-rich Low_complexity Low_complexity 2 155 0 8 1548 209 118 29 0 chr4 126291432 126291466 -29338654 + MIRc SINE MIR 116 150 -118 8 1548 207 0 0 0 chr4 126291735 126291758 -29338362 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 8 1548 664 161 110 0 chr4 126291952 126292070 -29338050 + B1_Mur3 SINE Alu 3 133 -16 8 1548 526 224 15 60 chr4 126292070 126292203 -29337917 + B3 SINE B2 1 127 -89 8 1548 225 0 0 0 chr4 126292276 126292301 -29337819 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1548 515 309 0 75 chr4 126292555 126292716 -29337404 + ID_B1 SINE B4 25 173 -51 8 1548 344 269 73 9 chr4 126292641 126292750 -29337370 + B1F SINE Alu 19 134 -15 8 1548 600 195 16 8 chr4 126292878 126293007 -29337113 + B1_Mur2 SINE Alu 17 146 -3 8 1548 348 183 33 0 chr4 126293066 126293126 -29336994 + PB1D10 SINE Alu 21 82 -35 8 1548 345 192 24 60 chr4 126293126 126293149 -29336971 + ID_B1 SINE B4 102 181 -43 8 1548 403 266 35 71 chr4 126293176 126293346 -29336774 + RSINE1 SINE B4 2 165 0 8 1548 2154 128 23 23 chr4 126293482 126293833 -29336287 - ORR1B1 LTR MaLR -2 392 42 8 1548 1402 222 76 107 chr4 126294712 126294945 -29335175 - MTD LTR MaLR -1 418 209 8 1548 1526 52 16 5 chr4 126294945 126295137 -29334983 - B2_Mm2 SINE B2 0 195 2 8 1548 1402 222 76 107 chr4 126295137 126295322 -29334798 - MTD LTR MaLR -211 208 13 8 1548 1241 92 29 0 chr4 126295420 126295593 -29334527 + B2_Mm1t SINE B2 2 179 -14 8 1548 180 0 0 0 chr4 126295696 126295716 -29334404 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1548 258 176 0 0 chr4 126295979 126296030 -29334090 + CT-rich Low_complexity Low_complexity 2 52 0 8 1548 644 212 190 27 chr4 126296094 126296207 -29333913 + B3 SINE B2 2 109 -107 8 1548 189 107 0 0 chr4 126296207 126296235 -29333885 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1548 644 212 190 27 chr4 126296235 126296305 -29333815 + B3 SINE B2 110 214 -2 8 1548 834 242 17 80 chr4 126296327 126296565 -29333555 + ID_B1 SINE B4 2 224 0 8 1548 823 213 12 23 chr4 126298390 126298563 -29331557 + ID_B1 SINE B4 49 219 -5 8 1548 392 243 108 0 chr4 126299033 126299144 -29330976 - L2b LINE L2 -13 3362 3240 8 1548 327 301 21 11 chr4 126299236 126299330 -29330790 + MER103 DNA DNA 22 116 -50 8 1548 276 206 86 29 chr4 126299669 126299739 -29330381 - ID4 SINE ID -9 74 1 8 1548 965 215 104 48 chr4 126299824 126300052 -29330068 - MTD LTR MaLR 0 419 180 8 1548 1051 178 62 5 chr4 126300052 126300261 -29329859 - URR1B DNA MER1_type -4 221 1 8 1548 965 215 104 48 chr4 126300261 126300301 -29329819 - MTD LTR MaLR -240 179 136 8 1548 314 194 60 0 chr4 126300301 126300368 -29329752 + B4 SINE B4 81 151 -141 8 1548 517 178 109 0 chr4 126300310 126300411 -29329709 + PB1D9 SINE Alu 9 120 0 8 1548 1223 94 0 6 chr4 126300416 126300597 -29329523 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1548 453 240 303 15 chr4 126300599 126300805 -29329315 + B4A SINE B4 1 265 -27 8 1548 1063 110 7 0 chr4 126301162 126301308 -29328812 - B1_Mus1 SINE Alu -1 147 1 8 1548 432 309 69 60 chr4 126301638 126301855 -29328265 - MIR SINE MIR -29 233 15 8 1548 796 174 15 0 chr4 126302143 126302275 -29327845 + B1_Mus2 SINE Alu 10 143 -4 8 1548 291 54 0 0 chr4 126302349 126302386 -29327734 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1548 4267 118 25 52 chr4 126302739 126303511 -29326609 + RMER17A LTR ERVK 1 751 0 8 1548 1163 61 0 39 chr4 126303962 126304115 -29326005 - B1_Mus2 SINE Alu 0 147 1 8 1548 324 0 0 0 chr4 126304135 126304171 -29325949 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1548 584 183 28 78 chr4 126304174 126304316 -29325804 - B1_Mur3 SINE Alu -6 143 9 8 1548 440 99 0 14 chr4 126305279 126305351 -29324769 + (GGGAGA)n Simple_repeat Simple_repeat 1 71 0 8 1548 318 238 93 28 chr4 126305463 126305571 -29324549 + L1MC4 LINE L1 7928 8042 0 8 1548 531 206 114 0 chr4 126305580 126305711 -29324409 + B1_Mur4 SINE Alu 1 146 -4 8 1548 579 226 17 0 chr4 126305791 126305906 -29324214 + ID_B1 SINE B4 87 203 -21 8 1548 219 146 0 0 chr4 126305907 126305948 -29324172 + (CCA)n Simple_repeat Simple_repeat 3 43 0 8 1548 633 224 24 8 chr4 126306024 126306150 -29323970 - ID_B1 SINE B4 -10 214 87 8 1548 401 235 62 44 chr4 126306155 126306315 -29323805 + L1MC5 LINE L1 7695 7857 -104 8 1548 549 262 83 0 chr4 126306470 126306615 -29323505 - B3A SINE B2 -15 183 27 8 1548 577 238 13 52 chr4 126306634 126306789 -29323331 - B3 SINE B2 -3 213 65 8 1548 216 158 0 0 chr4 126306816 126306854 -29323266 + T-rich Low_complexity Low_complexity 1 38 0 8 1548 884 169 6 51 chr4 126306854 126307010 -29323110 - B1_Mur2 SINE Alu 0 149 1 8 1548 2222 145 87 8 chr4 126307078 126307468 -29322652 - MTC LTR MaLR 0 421 1 8 1548 350 326 152 21 chr4 126307749 126307940 -29322180 + MIR SINE MIR 21 236 -26 8 1548 476 299 14 36 chr4 126308272 126308411 -29321709 - RSINE1 SINE B4 -2 163 28 8 1548 1712 16 0 0 chr4 126308457 126308646 -29321474 - B2_Mm1a SINE B2 -3 190 2 8 1548 694 147 9 18 chr4 126308650 126308761 -29321359 - B1_Mur3 SINE Alu 0 149 40 8 1548 210 227 0 0 chr4 126308763 126308807 -29321313 + CT-rich Low_complexity Low_complexity 3 46 0 8 1548 242 179 17 35 chr4 126308810 126308868 -29321252 - B1_Mus2 SINE Alu -89 58 2 8 1548 280 266 75 0 chr4 126309010 126309104 -29321016 - ID_B1 SINE B4 0 224 124 8 1548 227 248 91 99 chr4 126309104 126309131 -29320989 - PB1D7 SINE Alu 0 120 1 8 1548 201 74 0 0 chr4 126309244 126309271 -29320849 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1548 29 0 0 0 chr4 126309394 126309423 -29320697 + AT_rich Low_complexity Low_complexity 1 29 0 8 1548 918 96 50 29 chr4 126309454 126309593 -29320527 - B1_Mur4 SINE Alu 0 150 9 8 1548 586 252 41 0 chr4 126309675 126309798 -29320322 + B1_Mus2 SINE Alu 5 132 -15 8 1548 340 324 66 19 chr4 126309905 126310100 -29320020 + L1M4 LINE L1 5352 5558 -620 8 1548 864 183 233 6 chr4 126310100 126310276 -29319844 + B3 SINE B2 1 216 0 8 1548 340 324 66 19 chr4 126310276 126310291 -29319829 + L1M4 LINE L1 5559 5572 -606 8 1548 508 214 8 59 chr4 126310347 126310466 -29319654 - PB1D10 SINE Alu 0 117 5 8 1548 1152 74 0 45 chr4 126310784 126310939 -29319181 - B1_Mus1 SINE Alu 0 148 1 8 1548 1024 245 16 62 chr4 126310964 126311269 -29318851 - B4A SINE B4 0 292 2 8 1548 1270 258 126 16 chr4 126311485 126312048 -29318072 + L1MB3 LINE L1 5504 6128 -55 9 1548 1021 278 29 8 chr4 126312049 126312292 -29317828 + B4A SINE B4 12 259 -33 9 1548 387 0 0 0 chr4 126312300 126312343 -29317777 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1548 301 280 70 85 chr4 126313265 126313394 -29316726 - PB1 SINE Alu -15 132 6 9 1548 242 231 8 132 chr4 126313297 126313418 -29316702 - MT2B2 LTR ERVL -303 298 164 9 1548 201 138 0 0 chr4 126314008 126314037 -29316083 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 9 1548 226 321 0 0 chr4 126314407 126314488 -29315632 - ID4 SINE ID 0 83 3 9 1548 540 235 9 0 chr4 126314517 126314632 -29315488 - L1M3 LINE L1 -2101 4039 3924 9 1548 438 20 0 0 chr4 126314637 126314688 -29315432 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 1548 702 199 21 45 chr4 126314694 126314923 -29315197 - MTD LTR MaLR -14 405 152 9 1548 1195 56 7 0 chr4 126315334 126315478 -29314642 - B1_Mus2 SINE Alu 0 147 3 9 1548 276 296 14 0 chr4 126315490 126315561 -29314559 + ID4 SINE ID 12 83 0 9 1548 225 308 0 0 chr4 126315583 126315700 -29314420 + (TA)n Simple_repeat Simple_repeat 1 117 0 9 1548 393 86 0 0 chr4 126315701 126315759 -29314361 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1548 330 250 42 0 chr4 126315759 126315831 -29314289 - PB1D9 SINE Alu -11 109 35 9 1548 295 301 44 0 chr4 126315858 126315971 -29314149 + PB1 SINE Alu 3 120 -7 9 1548 189 0 0 0 chr4 126315996 126316017 -29314103 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1548 312 262 143 58 chr4 126316941 126317095 -29313025 + MIRb SINE MIR 26 192 -76 9 1548 549 76 275 29 chr4 126317234 126317365 -29312755 - B2_Mm2 SINE B2 -1 194 32 9 1548 1484 97 0 0 chr4 126317444 126317639 -29312481 + B2_Mm2 SINE B2 1 195 0 9 1548 189 292 100 36 chr4 126317656 126317766 -29312354 - L2b LINE L2 -250 3125 3009 9 1548 414 0 0 0 chr4 126317934 126317980 -29312140 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 9 1548 897 119 15 0 chr4 126317980 126318114 -29312006 - B1_Mus1 SINE Alu -12 136 1 9 1548 1322 94 5 40 chr4 126318286 126318485 -29311635 + B2_Mm1a SINE B2 2 193 0 9 1548 683 241 0 0 chr4 126318520 126318657 -29311463 + RSINE1 SINE B4 1 137 -28 9 1548 360 94 0 0 chr4 126319051 126319104 -29311016 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1548 218 273 0 0 chr4 126319472 126319516 -29310604 + B3A SINE B2 2 45 -153 9 1548 303 28 0 0 chr4 126319587 126319623 -29310497 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1548 632 104 42 0 chr4 126319623 126319712 -29310408 - B1_Mus2 SINE Alu -12 135 43 9 1548 831 257 21 5 chr4 126319731 126319919 -29310201 + ID_B1 SINE B4 27 217 -7 9 1548 672 13 0 0 chr4 126319967 126320044 -29310076 + (CAGG)n Simple_repeat Simple_repeat 2 78 0 9 1548 266 220 0 39 chr4 126320139 126320191 -29309929 + PB1D9 SINE Alu 10 59 -61 9 1548 321 161 0 0 chr4 126320194 126320281 -29309839 + GA-rich Low_complexity Low_complexity 94 180 0 9 1548 296 82 0 140 chr4 126320309 126320366 -29309754 + 4.5SRNA scRNA scRNA 40 88 -6 9 1548 600 156 11 0 chr4 126320315 126320405 -29309715 + B1_Mur1 SINE Alu 42 132 -17 9 1548 222 37 0 0 chr4 126320409 126320436 -29309684 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1548 288 288 14 0 chr4 126320831 126320904 -29309216 - ID4_ SINE ID -9 74 1 9 1548 683 250 124 10 chr4 126320962 126321156 -29308964 - ID_B1 SINE B4 -2 222 7 9 1548 243 0 0 0 chr4 126321568 126321595 -29308525 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1548 787 300 130 64 chr4 126322252 126322468 -29307652 - MLT1C LTR MaLR -5 462 207 9 1548 265 47 47 0 chr4 126322468 126322511 -29307609 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 9 1548 787 300 130 64 chr4 126322511 126322686 -29307434 - MLT1C LTR MaLR -261 206 45 9 1548 537 16 0 0 chr4 126322730 126322792 -29307328 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1548 680 155 0 83 chr4 126322918 126323038 -29307082 - B1_Mus1 SINE Alu -38 110 1 9 1548 684 221 48 69 chr4 126323051 126323240 -29306880 - B3A SINE B2 -4 194 10 9 1548 1430 84 0 16 chr4 126323348 126323542 -29306578 + B2_Mm2 SINE B2 2 192 -3 9 1548 935 121 50 0 chr4 126323562 126323702 -29306418 + B1_Mus1 SINE Alu 2 148 0 9 1548 288 226 177 0 chr4 126324573 126324635 -29305485 + ID4_ SINE ID 2 74 -9 9 1548 507 262 0 46 chr4 126324643 126324738 -29305382 + ID_B1 SINE B4 109 202 -22 9 1548 727 151 0 25 chr4 126324738 126324753 -29305367 - PB1D9 SINE Alu 0 120 108 9 1548 549 0 0 0 chr4 126324753 126324814 -29305306 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 9 1548 727 151 0 25 chr4 126324814 126324920 -29305200 - PB1D9 SINE Alu -13 107 2 9 1548 507 262 0 46 chr4 126324920 126324932 -29305188 + ID_B1 SINE B4 203 211 -13 9 1548 22 35 0 0 chr4 126326314 126326343 -29303777 + AT_rich Low_complexity Low_complexity 1 29 0 9 1548 195 42 0 0 chr4 126326343 126326367 -29303753 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1548 539 226 56 9 chr4 126326367 126326474 -29303646 - B3A SINE B2 -86 112 1 9 1548 576 0 0 0 chr4 126326691 126326755 -29303365 + (TC)n Simple_repeat Simple_repeat 1 64 0 9 1548 22 35 0 0 chr4 126326787 126326816 -29303304 + AT_rich Low_complexity Low_complexity 1 29 0 9 1548 438 278 87 8 chr4 126326960 126327087 -29303033 + B4 SINE B4 68 204 -88 9 1548 813 167 0 50 chr4 126326977 126327089 -29303031 + B1_Mur3 SINE Alu 6 117 -32 9 1548 455 48 16 0 chr4 126327089 126327151 -29302969 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1548 813 167 0 50 chr4 126327151 126327167 -29302953 + B1_Mur3 SINE Alu 118 128 -21 9 1548 201 74 0 0 chr4 126327167 126327194 -29302926 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 9 1548 775 182 15 0 chr4 126327209 126327341 -29302779 + B1_Mur1 SINE Alu 6 139 -10 9 1548 294 175 125 0 chr4 126327348 126327468 -29302652 + (CAAAC)n Simple_repeat Simple_repeat 5 139 0 9 1548 686 188 0 27 chr4 126327548 126327816 -29302304 + (TG)n Simple_repeat Simple_repeat 1 260 0 9 1548 383 42 21 0 chr4 126327819 126327867 -29302253 - HAL1-3A_ME LINE L1 -840 2018 1970 9 1548 219 114 0 0 chr4 126328276 126328311 -29301809 + (CAT)n Simple_repeat Simple_repeat 2 36 0 9 1548 295 346 76 13 chr4 126328410 126328485 -29301635 + B4A SINE B4 2 86 -206 9 1548 576 192 2 4 chr4 126328485 126328588 -29301532 + PB1D9 SINE Alu 2 106 -41 9 1548 773 226 160 5 chr4 126328588 126328775 -29301345 + B3 SINE B2 1 216 0 9 1548 427 261 28 56 chr4 126328775 126328813 -29301307 + B1_Mus2 SINE Alu 107 139 -8 9 1548 4344 38 8 0 chr4 126328875 126329374 -29300746 + RLTR1C LTR ERV1 1 503 0 9 1548 347 316 63 0 chr4 126329397 126329492 -29300628 + PB1D7 SINE Alu 1 101 -19 9 1548 752 174 29 14 chr4 126329507 126329647 -29300473 + B1_Mus2 SINE Alu 6 147 0 9 1548 226 169 22 88 chr4 126329649 126329740 -29300380 + A-rich Low_complexity Low_complexity 4 88 0 9 1548 307 270 0 0 chr4 126329795 126329869 -29300251 + CT-rich Low_complexity Low_complexity 4 77 0 9 1548 815 132 21 0 chr4 126329870 126330014 -29300106 + C-rich Low_complexity Low_complexity 1 147 0 9 1548 271 160 80 11 chr4 126330014 126330084 -29300036 - B1_Mur4 SINE Alu 0 150 68 9 1548 1062 203 25 0 chr4 126330076 126330278 -29299842 - MTD LTR MaLR -208 211 5 9 1548 828 241 83 10 chr4 126330809 126331014 -29299106 + ID_B1 SINE B4 5 224 0 9 1548 225 256 139 0 chr4 126331040 126331126 -29298994 + L1M2 LINE L1 3361 3458 -2685 9 1548 711 198 8 0 chr4 126331171 126331297 -29298823 + B1_Mur1 SINE Alu 1 127 -22 9 1548 405 0 0 0 chr4 126331309 126331354 -29298766 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 9 1548 500 295 92 64 chr4 126331515 126331797 -29298323 - B4 SINE B4 0 292 3 9 1548 885 188 0 0 chr4 126331828 126331966 -29298154 - B1_Mur1 SINE Alu -7 142 5 9 1548 254 95 0 23 chr4 126331992 126332035 -29298085 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 9 1548 309 68 0 0 chr4 126332035 126332078 -29298042 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1548 36 0 0 21 chr4 126332108 126332138 -29297982 + AT_rich Low_complexity Low_complexity 1 30 0 9 1548 733 165 311 0 chr4 126332138 126332302 -29297818 - B3 SINE B2 0 216 2 9 1548 36 0 0 21 chr4 126332302 126332318 -29297802 + AT_rich Low_complexity Low_complexity 1 16 0 9 1548 657 175 8 26 chr4 126332320 126332456 -29297664 - B1_Mur2 SINE Alu -1 148 16 9 1548 1420 85 11 0 chr4 126332462 126332650 -29297470 - B2_Mm1t SINE B2 -2 191 2 9 1548 329 0 0 24 chr4 126333617 126333659 -29296461 + (TTA)n Simple_repeat Simple_repeat 2 42 0 9 1548 204 243 68 54 chr4 126333659 126333733 -29296387 - MIRm SINE MIR -132 144 70 9 1548 255 246 15 0 chr4 126334415 126334480 -29295640 + MIRm SINE MIR 111 176 -100 9 1548 495 0 0 0 chr4 126334711 126334766 -29295354 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1548 568 242 30 0 chr4 126334948 126335080 -29295040 + B1F SINE Alu 9 144 -5 9 1548 392 311 0 0 chr4 126335418 126335524 -29294596 + PB1D7 SINE Alu 1 106 -14 9 1548 207 0 0 0 chr4 126335871 126335894 -29294226 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1548 1152 36 0 35 chr4 126335897 126336042 -29294078 - B1_Mm SINE Alu -7 140 1 9 1548 385 315 53 35 chr4 126336144 126336317 -29293803 + ID_B1 SINE B4 42 217 -7 9 1548 508 276 26 19 chr4 126336593 126336748 -29293372 - MIR SINE MIR -98 164 9 9 1548 405 227 45 0 chr4 126337314 126337424 -29292696 + L1MD3 LINE L1 7881 7995 0 9 1548 236 309 25 0 chr4 126337807 126337888 -29292232 + MT2B2 LTR ERVL 156 238 -346 9 1548 395 194 241 0 chr4 126337819 126337927 -29292193 + ID_B1 SINE B4 85 218 -6 1 1548 318 194 0 0 chr4 126338214 126338281 -29291839 + CT-rich Low_complexity Low_complexity 2 68 0 1 1548 263 293 12 12 chr4 126338282 126338365 -29291755 - ID4 SINE ID 0 83 1 1 1548 542 204 18 9 chr4 126339801 126339915 -29290205 - PB1D7 SINE Alu -1 119 5 1 1548 347 322 39 66 chr4 126340497 126340753 -29289367 - MIR SINE MIR -13 249 1 1 1548 782 172 0 27 chr4 126340904 126341053 -29289067 + B1_Mur3 SINE Alu 5 149 0 1 1548 844 274 14 19 chr4 126341215 126341431 -29288689 + B3 SINE B2 1 215 -1 1 1548 451 250 10 0 chr4 126341440 126341540 -29288580 + PB1D9 SINE Alu 5 105 -15 1 1548 2562 170 70 147 chr4 126341540 126342202 -29287918 + RMER19C LTR ERVK 1 611 0 1 1548 474 18 0 0 chr4 126342226 126342281 -29287839 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1548 1212 48 0 0 chr4 126343447 126343593 -29286527 + B1_Mus1 SINE Alu 2 147 -1 1 1548 198 0 0 0 chr4 126343595 126343617 -29286503 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1548 374 284 0 0 chr4 126343681 126343762 -29286358 + ID4 SINE ID 2 82 -1 1 1548 547 242 52 59 chr4 126344121 126344257 -29285863 - B3 SINE B2 -28 188 54 1 1548 1052 195 54 0 chr4 126344443 126344648 -29285472 - B3 SINE B2 0 216 1 1 1548 1489 269 9 106 chr4 126345732 126346263 -29283857 - RMER19C LTR ERVK 0 611 132 1 1548 3087 163 228 74 chr4 126346297 126347079 -29283041 + RMER19B LTR ERVK 1 902 0 1 1548 209 113 0 54 chr4 126347112 126347168 -29282952 + A-rich Low_complexity Low_complexity 1 53 0 1 1548 334 125 111 12 chr4 126347177 126347258 -29282862 - RMER19C LTR ERVK -522 89 1 1 1548 936 113 0 21 chr4 126347288 126347433 -29282687 + B1_Mur3 SINE Alu 7 148 -1 1 1548 879 139 66 0 chr4 126348303 126348440 -29281680 + B1_Mur4 SINE Alu 3 148 -2 1 1548 592 258 0 0 chr4 126348863 126348995 -29281125 - ID_B1 SINE B4 0 224 93 1 1548 332 267 122 0 chr4 126348915 126349005 -29281115 - PB1 SINE Alu -25 102 2 1 1548 234 62 0 0 chr4 126349507 126349539 -29280581 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1548 874 189 0 0 chr4 126350170 126350313 -29279807 + B1_Mur4 SINE Alu 1 143 -7 1 1548 829 237 11 6 chr4 126350421 126350595 -29279525 - B4 SINE B4 -111 181 7 1 1548 1350 87 16 0 chr4 126350632 126350817 -29279303 + B2_Mm2 SINE B2 1 188 -7 1 1548 22 0 0 0 chr4 126350840 126350862 -29279258 + AT_rich Low_complexity Low_complexity 1 22 0 1 1548 255 234 13 25 chr4 126350975 126351054 -29279066 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1548 489 268 0 24 chr4 126351694 126351820 -29278300 + ID_B1 SINE B4 79 201 -23 1 1548 231 305 0 48 chr4 126351845 126351907 -29278213 + tRNA-Ala-GCY_ tRNA tRNA 8 66 -9 1 1548 420 258 8 8 chr4 126352046 126352059 -29278061 - ID_B1 SINE B4 -16 208 84 1 1548 755 98 0 0 chr4 126352059 126352171 -29277949 - B1_Mus2 SINE Alu -33 114 3 1 1548 619 302 58 58 chr4 126352334 126352362 -29277758 - B4 SINE B4 -14 278 242 1 1548 318 106 0 0 chr4 126352362 126352409 -29277711 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1548 619 302 58 58 chr4 126352409 126352658 -29277462 - B4 SINE B4 -51 241 1 1 1548 886 151 7 0 chr4 126352888 126353034 -29277086 - B1_Mus1 SINE Alu 0 148 2 1 193 2194 162 59 20 chr4 126353059 126353463 -29276657 - MTC LTR MaLR -1 420 1 1 1549 736 211 100 30 chr4 126353562 126353762 -29276358 - B3 SINE B2 -1 215 2 1 1549 509 239 7 68 chr4 126353805 126353953 -29276167 + B1_Mur2 SINE Alu 5 143 -6 1 1549 676 176 95 7 chr4 126353954 126354091 -29276029 + B1_Mur4 SINE Alu 2 150 0 1 1549 263 24 24 0 chr4 126354185 126354227 -29275893 - L1Md_T LINE L1 0 6582 6540 1 1549 42 77 0 0 chr4 126354227 126354318 -29275802 + AT_rich Low_complexity Low_complexity 1 91 0 1 1549 231 156 91 30 chr4 126354332 126354398 -29275722 - RSINE1 SINE B4 -30 135 66 1 1549 180 326 59 29 chr4 126355588 126355724 -29274396 + MIRb SINE MIR 81 220 -48 1 1549 326 241 30 8 chr4 126355842 126355976 -29274144 + (TATATG)n Simple_repeat Simple_repeat 5 141 0 1 1549 468 304 19 45 chr4 126355990 126356145 -29273975 + RSINE1 SINE B4 2 152 -13 1 1549 30 0 0 0 chr4 126356171 126356201 -29273919 + AT_rich Low_complexity Low_complexity 1 30 0 1 1549 436 318 126 27 chr4 126356576 126356838 -29273282 + B4A SINE B4 4 291 -1 1 1549 387 0 0 0 chr4 126356847 126356890 -29273230 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1549 237 219 121 12 chr4 126357562 126357645 -29272475 + B1_Mus1 SINE Alu 1 92 -56 1 1549 216 302 99 0 chr4 126358026 126358125 -29271995 - B1F1 SINE Alu 0 149 7 1 1549 806 182 0 0 chr4 126358309 126358446 -29271674 - B1_Mur3 SINE Alu -9 140 4 1 1549 453 254 106 28 chr4 126358993 126359135 -29270985 - RSINE1 SINE B4 -5 160 8 1 1549 441 257 55 0 chr4 126360143 126360250 -29269870 - B1_Mur2 SINE Alu 0 149 37 1 1549 2305 137 59 35 chr4 126360250 126360789 -29269331 - RMER6A LTR ERVK 0 756 1 1 1549 319 288 0 0 chr4 126360845 126360918 -29269202 - ID4_ SINE ID -10 73 1 1 1549 858 189 99 5 chr4 126360939 126361131 -29268989 - B3 SINE B2 -6 210 1 1 1549 25 51 0 0 chr4 126361169 126361208 -29268912 + AT_rich Low_complexity Low_complexity 1 39 0 1 1549 703 260 60 3 chr4 126361514 126361850 -29268270 - MLT1B LTR MaLR 0 390 10 1 1549 421 248 0 38 chr4 126361967 126362072 -29268048 + B1_Mm SINE Alu 47 147 0 1 1549 666 219 183 11 chr4 126362196 126362376 -29267744 - B3 SINE B2 -5 211 1 1 1549 199 190 102 17 chr4 126362399 126362458 -29267662 + MIRb SINE MIR 102 165 -103 1 1549 555 188 66 59 chr4 126362481 126362617 -29267503 + ID_B1 SINE B4 87 223 -1 1 1549 952 160 0 13 chr4 126362623 126362775 -29267345 + B1_Mur4 SINE Alu 1 150 0 1 1549 1168 115 16 32 chr4 126362778 126362967 -29267153 + B2_Mm1t SINE B2 2 187 -6 1 1549 259 253 12 37 chr4 126363021 126363103 -29267017 + ID4_ SINE ID 3 82 -1 1 1549 831 123 251 0 chr4 126363163 126363334 -29266786 + B3 SINE B2 1 214 -2 1 1549 941 151 0 0 chr4 126363356 126363502 -29266618 + B1_Mus2 SINE Alu 1 146 -1 1 1549 237 326 22 0 chr4 126363832 126363921 -29266199 + MamRep137 DNA TcMar? 8 98 -346 1 1549 439 245 0 124 chr4 126363944 126364065 -29266055 + ID_B1 SINE B4 119 224 0 1 1549 292 221 156 0 chr4 126364111 126364188 -29265932 + PB1D10 SINE Alu 6 94 -26 1 1549 1270 115 5 5 chr4 126364610 126364803 -29265317 - B2_Mm2 SINE B2 -1 194 2 1 1549 311 309 73 0 chr4 126364854 126364990 -29265130 - RSINE1 SINE B4 -17 148 3 1 1549 200 98 48 24 chr4 126364999 126365041 -29265079 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 1 1549 1261 245 77 19 chr4 126365087 126365466 -29264654 - L1MC1 LINE L1 -9 6324 5924 1 1549 529 233 119 30 chr4 126365513 126365681 -29264439 + B3A SINE B2 2 184 -32 1 1549 244 321 26 18 chr4 126365681 126365695 -29264425 - L1MC1 LINE L1 -338 5841 5828 1 1549 815 204 0 0 chr4 126365695 126365837 -29264283 - B1_Mur4 SINE Alu -8 142 1 1 1549 716 222 129 5 chr4 126365837 126366071 -29264049 - L1MC1 LINE L1 -352 5827 5564 1 1549 343 298 60 66 chr4 126366810 126366993 -29263127 - B3A SINE B2 -15 183 2 1 1549 180 0 0 0 chr4 126367353 126367373 -29262747 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1549 596 241 131 49 chr4 126367721 126367904 -29262216 - B3A SINE B2 0 198 1 1 1549 1099 57 50 0 chr4 126368039 126368179 -29261941 - B1_Mus2 SINE Alu 0 147 1 1 1549 248 272 210 31 chr4 126368391 126368537 -29261583 + MIRb SINE MIR 64 236 -26 1 1549 189 0 0 0 chr4 126368901 126368922 -29261198 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1549 518 276 51 38 chr4 126369022 126369180 -29260940 - RSINE1 SINE B4 -4 161 2 1 1549 219 88 0 0 chr4 126369434 126369468 -29260652 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1549 22 0 0 0 chr4 126371253 126371275 -29258845 + AT_rich Low_complexity Low_complexity 1 22 0 1 1549 288 212 106 0 chr4 126371945 126372030 -29258090 + L1ME3B LINE L1 6115 6208 -32 1 1549 288 70 0 0 chr4 126372195 126372238 -29257882 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1549 395 155 28 0 chr4 126372242 126372313 -29257807 - BC1_Mm scRNA scRNA -79 73 1 1 1549 500 275 128 0 chr4 126372831 126372980 -29257140 + B3 SINE B2 49 216 0 1 1549 243 329 0 0 chr4 126374007 126374077 -29256043 - ID4 SINE ID -5 78 9 1 1549 614 152 0 9 chr4 126374111 126374217 -29255903 - B1_Mus2 SINE Alu -2 145 41 1 1549 682 268 60 15 chr4 126374260 126374461 -29255659 - B3 SINE B2 -6 210 1 1 1549 872 214 102 0 chr4 126374496 126374683 -29255437 - B3 SINE B2 -1 215 10 1 1549 361 266 72 23 chr4 126374700 126374843 -29255277 - B3A SINE B2 -2 196 47 1 1549 635 187 14 43 chr4 126374875 126375015 -29255105 - B1_Mur1 SINE Alu -8 141 6 1 1549 225 65 0 0 chr4 126375061 126375092 -29255028 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1549 201 229 0 0 chr4 126375098 126375146 -29254974 + CT-rich Low_complexity Low_complexity 1 48 0 1 1549 624 152 188 0 chr4 126375149 126375261 -29254859 - B1_Mur4 SINE Alu -13 137 5 1 1549 269 301 48 175 chr4 126375267 126375456 -29254664 - B4A SINE B4 0 292 128 1 1549 852 137 0 0 chr4 126375644 126375783 -29254337 + (TTC)n Simple_repeat Simple_repeat 3 141 0 1 1549 1173 82 23 0 chr4 126375785 126375956 -29254164 - B2_Mm2 SINE B2 -7 188 14 1 1549 435 285 62 0 chr4 126375957 126376087 -29254033 - ID_B1 SINE B4 -27 197 60 1 1549 336 276 40 20 chr4 126376219 126376319 -29253801 + PB1D10 SINE Alu 5 106 -11 1 1549 322 319 137 7 chr4 126376453 126376592 -29253528 + RSINE1 SINE B4 3 159 -6 1 1549 225 0 0 0 chr4 126378315 126378340 -29251780 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1549 787 144 6 115 chr4 126378352 126378517 -29251603 - B1_Mur4 SINE Alu -2 148 2 1 1549 498 290 45 22 chr4 126378535 126378669 -29251451 + B1_Mur1 SINE Alu 1 137 -12 1 1549 858 152 7 20 chr4 126379334 126379482 -29250638 - B1_Mus2 SINE Alu -1 146 1 1 1549 621 221 75 11 chr4 126380058 126380232 -29249888 + B3 SINE B2 29 213 -3 1 1549 202 289 252 20 chr4 126380358 126380457 -29249663 - L2b LINE L2 0 3375 3254 1 1549 682 112 0 0 chr4 126381164 126381262 -29248858 + B1_Mur4 SINE Alu 40 137 -13 1 1549 265 267 0 132 chr4 126381262 126381285 -29248835 + ID_B1 SINE B4 120 224 0 1 1549 571 182 21 47 chr4 126382285 126382421 -29247699 + RSINE1 SINE B4 2 133 -32 1 1549 213 39 0 0 chr4 126382737 126382763 -29247357 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1549 530 231 8 17 chr4 126382773 126382892 -29247228 - PB1D9 SINE Alu -2 118 1 1 1549 534 70 0 0 chr4 126382993 126383064 -29247056 + (GGGA)n Simple_repeat Simple_repeat 1 71 0 1 1549 592 257 7 39 chr4 126385723 126385877 -29244243 + B1_Mur1 SINE Alu 1 149 0 1 1549 200 299 73 15 chr4 126386634 126386702 -29243418 + MIRm SINE MIR 201 272 -4 1 1549 766 224 21 0 chr4 126387185 126387328 -29242792 + B1_Mm SINE Alu 2 147 0 1 1549 264 279 89 44 chr4 126387438 126387528 -29242592 - B4 SINE B4 -195 97 4 1 1549 362 278 38 38 chr4 126387629 126387760 -29242360 - ID_B1 SINE B4 -1 223 93 1 1549 1045 90 0 0 chr4 126387921 126388065 -29242055 + B1_Mus1 SINE Alu 1 144 -4 1 1549 335 301 126 23 chr4 126388797 126389059 -29241061 - L1MD3 LINE L1 -1 7994 7706 1 1549 427 186 70 0 chr4 126389124 126389210 -29240910 - B1_Mur3 SINE Alu -9 140 49 1 1549 1410 55 49 11 chr4 126389919 126390102 -29240018 + B2_Mm2 SINE B2 2 191 -4 1 1549 770 208 20 14 chr4 126390228 126390374 -29239746 - B1_Mur2 SINE Alu -1 148 2 1 1549 1274 106 10 64 chr4 126390376 126390578 -29239542 - B2_Mm2 SINE B2 -3 192 2 1 1549 250 258 14 70 chr4 126390698 126390769 -29239351 + ID4 SINE ID 15 81 -2 1 1549 492 175 0 0 chr4 126391263 126391360 -29238760 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 1549 3889 171 53 46 chr4 126391488 126392382 -29237738 - Lx2B LINE L1 -11 6989 6090 1 1549 1074 102 7 0 chr4 126392547 126392694 -29237426 + B1_Mus1 SINE Alu 1 148 0 1 1549 360 0 0 0 chr4 126393010 126393050 -29237070 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1549 846 181 14 20 chr4 126394103 126394250 -29235870 - B1_Mur2 SINE Alu -2 147 2 1 1549 191 336 121 50 chr4 126394266 126394407 -29235713 - MIRc SINE MIR -58 210 60 1 1549 348 267 111 0 chr4 126395144 126395234 -29234886 + MLT1A0 LTR MaLR 20 119 -246 1 1549 355 324 62 36 chr4 126395188 126395380 -29234740 + CYRA11_Mm Unknown Y-chromosome 124 320 -297 1 1549 1120 149 123 0 chr4 126395239 126395434 -29234686 - URR1A DNA MER1_type -7 219 1 1 1549 430 290 132 32 chr4 126395457 126395646 -29234474 + MLT1A0 LTR MaLR 154 361 -4 1 1549 1283 58 17 17 chr4 126396015 126396190 -29233930 + B2_Mm2 SINE B2 13 187 -8 1 1549 688 119 174 45 chr4 126396308 126396440 -29233680 + B1_Mur3 SINE Alu 1 149 0 1 1549 414 0 0 0 chr4 126397062 126397108 -29233012 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1549 314 259 102 91 chr4 126397148 126397214 -29232906 - MER2 DNA MER2_type -23 322 252 1 1549 1429 76 5 0 chr4 126397214 126397399 -29232721 + B2_Mm1a SINE B2 2 187 -6 1 1549 314 259 102 91 chr4 126397399 126397519 -29232601 - MER2 DNA MER2_type -94 251 134 1 1549 327 270 142 28 chr4 126399432 126399601 -29230519 - MIR SINE MIR -71 191 11 1 1549 1029 108 0 7 chr4 126401026 126401175 -29228945 + B1_Mus1 SINE Alu 1 148 0 1 1549 630 245 169 0 chr4 126401199 126401383 -29228737 + B3 SINE B2 1 215 -1 1 1549 550 153 66 83 chr4 126401403 126401524 -29228596 + PB1D9 SINE Alu 1 119 -1 1 1549 23 0 0 0 chr4 126401524 126401547 -29228573 + AT_rich Low_complexity Low_complexity 1 23 0 1 1549 1214 82 0 0 chr4 126401623 126401781 -29228339 - B2_Mm2 SINE B2 -29 166 9 1 1549 534 225 41 70 chr4 126401787 126401959 -29228161 - MER33 DNA MER1_type -153 171 5 1 1549 305 264 10 62 chr4 126402369 126402384 -29227736 - ID_B1 SINE B4 -127 97 6 1 1549 353 256 0 49 chr4 126402384 126402466 -29227654 - ID4 SINE ID 0 83 6 1 1549 210 217 22 0 chr4 126402466 126402512 -29227608 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1549 378 285 258 15 chr4 126402585 126402717 -29227403 - RSINE1 SINE B4 0 165 2 1 1549 471 18 0 0 chr4 126402720 126402776 -29227344 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1 1549 671 155 108 0 chr4 126402776 126402891 -29227229 - B1_Mur1 SINE Alu -10 139 11 1 1549 390 215 101 62 chr4 126402891 126402905 -29227215 - ID_B1 SINE B4 -15 209 76 1 1549 375 23 0 0 chr4 126403123 126403167 -29226953 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1549 225 0 0 0 chr4 126403167 126403191 -29226929 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1549 374 298 77 72 chr4 126403386 126403567 -29226553 + B4 SINE B4 32 213 -79 1 1549 503 255 1 0 chr4 126403549 126403663 -29226457 + PB1D9 SINE Alu 7 120 0 1 1549 650 155 25 49 chr4 126403942 126404064 -29226056 + PB1D9 SINE Alu 2 120 0 1 1549 356 259 61 37 chr4 126404403 126404567 -29225553 + L1MC LINE L1 5035 5202 -944 1 1549 1681 26 0 0 chr4 126404567 126404759 -29225361 + B2_Mm1a SINE B2 2 193 0 1 1549 324 233 83 46 chr4 126404776 126404884 -29225236 + PB1D10 SINE Alu 2 113 -4 1 1549 1085 210 39 10 chr4 126404893 126405100 -29225020 + B3 SINE B2 1 213 -3 1 1549 399 88 0 22 chr4 126405164 126405230 -29224890 + B2_Mm2 SINE B2 47 109 -107 1 1549 324 0 0 0 chr4 126405245 126405281 -29224839 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1549 788 194 29 22 chr4 126405343 126405480 -29224640 + B1_Mur4 SINE Alu 1 138 -12 1 1549 324 0 0 0 chr4 126405480 126405516 -29224604 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1549 675 217 44 12 chr4 126405579 126405739 -29224381 + B3 SINE B2 4 168 -27 1 1549 504 59 0 0 chr4 126405742 126405810 -29224310 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1 1549 312 298 60 0 chr4 126405810 126405894 -29224226 + B3A SINE B2 54 142 -56 1 1549 441 0 0 0 chr4 126405920 126405969 -29224151 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1549 1363 89 21 5 chr4 126405990 126406182 -29223938 + B2_Mm2 SINE B2 1 195 0 1 1549 273 318 149 0 chr4 126406183 126406378 -29223742 + L1M5 LINE L1 5369 5592 -852 1 1549 435 230 36 100 chr4 126406467 126406607 -29223513 + RSINE1 SINE B4 2 132 -33 1 1549 438 69 0 0 chr4 126406612 126406670 -29223450 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1549 723 265 85 0 chr4 126406801 126406990 -29223130 + B3 SINE B2 1 205 -11 1 1549 783 207 50 0 chr4 126407047 126407187 -29222933 - B1_Mur2 SINE Alu -2 147 1 1 1549 595 270 154 6 chr4 126407188 126407363 -29222757 - B3 SINE B2 -15 201 1 1 1549 416 290 109 25 chr4 126407403 126407686 -29222434 + L1MB8 LINE L1 5798 6104 -74 1 1549 345 298 9 55 chr4 126407696 126407806 -29222314 + RSINE1 SINE B4 28 132 -33 1 1549 216 67 0 0 chr4 126407808 126407838 -29222282 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1549 624 276 7 22 chr4 126408115 126408252 -29221868 + RSINE1 SINE B4 2 136 -29 1 1549 498 273 135 69 chr4 126408287 126408606 -29221514 + Lx8 LINE L1 7134 7473 0 1 1549 216 0 0 0 chr4 126408650 126408674 -29221446 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1549 474 18 0 0 chr4 126409003 126409058 -29221062 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1549 180 111 0 0 chr4 126411032 126411059 -29219061 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1549 23 0 0 0 chr4 126413003 126413026 -29217094 + GC_rich Low_complexity Low_complexity 1 23 0 1 1549 595 230 50 7 chr4 126413815 126413955 -29216165 - RSINE1 SINE B4 -18 147 2 1 1549 312 27 0 0 chr4 126414149 126414186 -29215934 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1549 405 39 0 0 chr4 126414186 126414236 -29215884 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1549 339 25 0 0 chr4 126414502 126414542 -29215578 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1549 1292 107 37 0 chr4 126414682 126414869 -29215251 + B2_Mm2 SINE B2 2 195 0 1 1549 406 230 48 45 chr4 126414965 126415104 -29215016 - MIR SINE MIR -102 160 20 1 1549 195 348 117 21 chr4 126415105 126415199 -29214921 + MIRb SINE MIR 36 138 -130 1 1549 656 155 0 4 chr4 126415910 126416021 -29214099 - B3 SINE B2 -88 107 1 1 1549 285 29 0 0 chr4 126416107 126416141 -29213979 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1549 713 250 8 0 chr4 126416150 126416282 -29213838 - RSINE1 SINE B4 -31 134 2 1 1549 843 160 46 20 chr4 126416432 126416585 -29213535 + URR1B DNA MER1_type 1 157 -68 1 1549 259 141 41 52 chr4 126416586 126416683 -29213437 + RMER17C LTR ERVK 182 277 -133 1 1549 425 145 0 57 chr4 126416682 126416770 -29213350 + URR1B DNA MER1_type 143 225 0 1 1549 608 33 10 52 chr4 126416803 126416899 -29213221 - RLTR44D LTR ERVK -394 92 1 1 1549 533 243 0 35 chr4 126417061 126417176 -29212944 - PB1D10 SINE Alu -1 116 6 1 1549 241 302 9 86 chr4 126417087 126417192 -29212928 - MT2B LTR ERVL -351 250 154 1 1549 401 248 57 49 chr4 126417327 126417450 -29212670 - MER5A DNA MER1_type -33 156 33 1 1549 787 222 79 44 chr4 126417714 126417917 -29212203 + B3 SINE B2 3 212 -4 1 1549 1564 27 27 0 chr4 126417961 126418146 -29211974 + B2_Mm1a SINE B2 2 191 -2 1 1549 23 0 0 0 chr4 126418494 126418517 -29211603 + AT_rich Low_complexity Low_complexity 1 23 0 1 1549 181 256 11 99 chr4 126418610 126418701 -29211419 + L2 LINE L2 796 878 -2541 1 1549 279 79 0 0 chr4 126418703 126418741 -29211379 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1549 286 258 123 47 chr4 126419577 126419683 -29210437 - B1F SINE Alu -34 115 2 1 1549 755 134 8 0 chr4 126419811 126419930 -29210190 + B1_Mur3 SINE Alu 30 149 0 1 1549 237 361 100 8 chr4 126420432 126420552 -29209568 + MER102c DNA MER1_type 4 134 -197 1 1549 590 225 64 14 chr4 126420555 126420695 -29209425 + RSINE1 SINE B4 4 150 -15 1 1549 197 194 28 0 chr4 126421008 126421057 -29209063 - L2c LINE L2 -11 3376 3315 1 1549 448 301 96 0 chr4 126422613 126422759 -29207361 + MIR SINE MIR 32 191 -71 1 1549 559 220 28 0 chr4 126424791 126424900 -29205220 - PB1D7 SINE Alu -7 113 2 1 1549 213 39 0 0 chr4 126424927 126424953 -29205167 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1549 1278 27 0 7 chr4 126424953 126425101 -29205019 - B1_Mus2 SINE Alu 0 147 1 1 1549 297 51 0 0 chr4 126425140 126425179 -29204941 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1549 687 139 9 44 chr4 126425189 126425302 -29204818 + B1_Mur2 SINE Alu 25 133 -16 1 1549 342 0 0 0 chr4 126425473 126425511 -29204609 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1 1549 651 221 14 41 chr4 126425522 126425668 -29204452 - B1F1 SINE Alu -5 144 3 1 1549 437 213 214 32 chr4 126426077 126426203 -29203917 + RSINE1 SINE B4 3 151 -14 1 1549 210 182 25 38 chr4 126426865 126426945 -29203175 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1549 232 328 35 113 chr4 126428386 126428616 -29201504 - L3b LINE CR1 -40 442 231 1 1549 245 246 0 0 chr4 126429956 126430025 -29200095 + (CAG)n Simple_repeat Simple_repeat 3 71 0 1 1549 276 30 0 0 chr4 126432016 126432049 -29198071 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 1 1549 793 153 58 7 chr4 126433118 126433256 -29196864 - B1_Mur4 SINE Alu 0 150 6 1 1549 510 292 25 0 chr4 126433275 126433395 -29196725 - PB1 SINE Alu -2 125 3 1 1549 228 340 71 45 chr4 126433715 126433869 -29196251 - MIRb SINE MIR -88 180 23 1 1549 243 88 0 0 chr4 126434481 126434515 -29195605 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 1 1549 306 0 0 0 chr4 126434540 126434574 -29195546 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1549 1118 156 0 11 chr4 126434598 126434858 -29195262 + (TCTCTG)n Simple_repeat Simple_repeat 1 257 0 1 1549 350 244 53 38 chr4 126435058 126435187 -29194933 - PB1D10 SINE Alu -1 148 18 1 1549 717 228 14 7 chr4 126435268 126435414 -29194706 - B1_Mur1 SINE Alu 0 149 3 1 1549 474 257 112 49 chr4 126435462 126435605 -29194515 - RSINE1 SINE B4 -12 153 2 1 1549 23 0 0 0 chr4 126436078 126436101 -29194019 + AT_rich Low_complexity Low_complexity 1 23 0 1 1549 234 0 0 0 chr4 126436147 126436173 -29193947 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1549 383 338 22 8 chr4 126436291 126436425 -29193695 - MIR3 SINE MIR -63 145 10 1 1549 344 234 26 0 chr4 126436685 126436762 -29193358 + ID4 SINE ID 1 79 -4 1 1549 255 270 54 0 chr4 126436830 126436904 -29193216 + L1M5 LINE L1 5569 5646 -478 1 1549 1011 202 9 66 chr4 126436910 126437138 -29192982 + B3 SINE B2 2 216 0 1 1549 419 169 0 0 chr4 126437165 126437230 -29192890 + B3A SINE B2 1 65 -133 1 1549 202 75 0 70 chr4 126437351 126437394 -29192726 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 1 1549 852 197 14 0 chr4 126437457 126437604 -29192516 - B1_Mur2 SINE Alu 0 149 1 1 1549 246 299 30 0 chr4 126437623 126437690 -29192430 + PB1D7 SINE Alu 52 120 0 1 1549 311 219 355 16 chr4 126437694 126437787 -29192333 + RSINE1 SINE B4 3 137 -28 1 1549 333 0 0 0 chr4 126437787 126437824 -29192296 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1549 311 219 355 16 chr4 126437824 126437851 -29192269 + RSINE1 SINE B4 138 164 -1 1 1549 191 196 20 0 chr4 126437857 126437891 -29192229 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 1 1549 195 42 0 0 chr4 126437891 126437915 -29192205 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1549 191 196 20 0 chr4 126437915 126437931 -29192189 + (TATATG)n Simple_repeat Simple_repeat 3 19 0 1 1549 201 329 0 0 chr4 126437931 126438004 -29192116 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1549 1482 242 86 57 chr4 126438174 126438535 -29191585 + MTD LTR MaLR 1 389 -30 1 1549 1266 99 15 30 chr4 126438535 126438732 -29191388 - B2_Mm2 SINE B2 -1 194 1 1 1549 1482 242 86 57 chr4 126438732 126438777 -29191343 + MTD LTR MaLR 390 419 0 1 1549 1053 24 8 0 chr4 126438979 126439106 -29191014 - B1_Mus2 SINE Alu 0 147 20 1 1549 485 235 54 81 chr4 126438981 126439129 -29190991 - B4 SINE B4 -69 223 80 1 1549 248 214 0 103 chr4 126440600 126440678 -29189442 - PB1D10 SINE Alu -5 112 43 1 1549 269 343 67 87 chr4 126440611 126440682 -29189438 - ID_B1 SINE B4 -33 191 112 1 1549 180 0 0 0 chr4 126440682 126440702 -29189418 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1 1549 269 343 67 87 chr4 126440702 126440727 -29189393 - ID_B1 SINE B4 -113 111 1 1 1549 745 92 0 0 chr4 126440727 126440825 -29189295 - B2_Mm2 SINE B2 -97 98 1 1 1549 434 299 20 17 chr4 126440901 126441052 -29189068 - B1F SINE Alu -3 146 1 1 1549 378 289 24 66 chr4 126441229 126441396 -29188724 - RSINE1 SINE B4 -3 162 3 1 1549 375 277 132 0 chr4 126441498 126441682 -29188438 - L1MA4 LINE L1 -376 5924 5701 1 1549 597 274 131 33 chr4 126441689 126442116 -29188004 - L1MEg LINE L1 -2996 3849 3381 1 1549 9918 91 7 11 chr4 126442309 126444455 -29185665 - L1_Mus3 LINE L1 -3 6635 4496 1 1549 4643 74 19 0 chr4 126444456 126445076 -29185044 + L1_Mus3 LINE L1 3868 4499 -1384 1 1549 804 183 23 0 chr4 126445097 126445263 -29184857 - B3 SINE B2 -11 182 2 1 1549 427 295 32 36 chr4 126445302 126445604 -29184516 - L1MEg LINE L1 -4222 2627 2151 1 1549 375 244 0 0 chr4 126445614 126445692 -29184428 - ID_B1 SINE B4 -1 223 146 1 1549 1139 191 44 0 chr4 126445698 126445902 -29184218 - B3 SINE B2 -3 213 1 1 1549 864 240 65 0 chr4 126445912 126446112 -29184008 - B3 SINE B2 -1 215 3 1 1549 302 233 65 37 chr4 126446155 126446262 -29183858 - L1M4 LINE L1 -451 5733 5624 1 1549 673 235 57 51 chr4 126446866 126447011 -29183109 + B3A SINE B2 10 160 -38 1 1549 381 58 0 0 chr4 126447011 126447063 -29183057 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1549 673 235 57 51 chr4 126447063 126447092 -29183028 + B3A SINE B2 161 185 -13 1 1549 952 154 0 0 chr4 126447173 126447316 -29182804 + B1_Mur4 SINE Alu 1 143 -7 1 1549 26 30 0 0 chr4 126447327 126447360 -29182760 + AT_rich Low_complexity Low_complexity 1 33 0 1 1549 331 308 24 30 chr4 126448358 126448522 -29181598 - L1MEg LINE L1 -6094 835 673 1 1549 1269 20 0 7 chr4 126448720 126448868 -29181252 - B1_Mus1 SINE Alu 0 148 2 1 1549 23 0 0 0 chr4 126449108 126449131 -29180989 + AT_rich Low_complexity Low_complexity 1 23 0 1 1549 10822 22 0 0 chr4 126449142 126451046 -29179074 - L1Md_T LINE L1 0 6582 4679 1 1549 231 237 0 0 chr4 126452726 126452764 -29177356 - ID_B1 SINE B4 -104 120 83 1 1549 251 139 0 44 chr4 126452915 126452960 -29177160 + B1_Mus1 SINE Alu 35 77 -71 1 1549 441 127 0 0 chr4 126453145 126453208 -29176912 + ID4 SINE ID 3 65 -18 1 1549 23 0 0 0 chr4 126453840 126453863 -29176257 + AT_rich Low_complexity Low_complexity 1 23 0 1 1549 3266 65 0 0 chr4 126453886 126454300 -29175820 - Lx3_Mus LINE L1 0 7009 6596 1 1549 271 333 0 0 chr4 126455479 126455554 -29174566 - ID4 SINE ID -1 82 8 1 1549 1248 114 33 0 chr4 126455600 126455784 -29174336 - B2_Mm1t SINE B2 -2 191 2 1 1549 21 36 0 0 chr4 126455784 126455812 -29174308 + AT_rich Low_complexity Low_complexity 1 28 0 1 1549 358 302 69 74 chr4 126455848 126455928 -29174192 - B4A SINE B4 0 292 119 1 1549 417 149 147 11 chr4 126455928 126456023 -29174097 - B1_Mur2 SINE Alu -8 141 34 1 1549 624 281 35 48 chr4 126456039 126456267 -29173853 - B4A SINE B4 -65 227 3 1 1549 28 0 0 0 chr4 126456911 126456939 -29173181 + AT_rich Low_complexity Low_complexity 1 28 0 1 1549 507 56 0 0 chr4 126458059 126458130 -29171990 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1549 458 130 0 0 chr4 126458794 126458863 -29171257 - B3 SINE B2 -146 70 2 1 1549 808 133 8 0 chr4 126460781 126460909 -29169211 + B3 SINE B2 2 130 -86 1 1549 746 265 123 72 chr4 126461076 126461425 -29168695 + MTEa LTR MaLR 1 367 -12 1 1549 581 193 35 0 chr4 126461514 126461628 -29168492 - PB1D7 SINE Alu -1 119 2 1 1549 223 258 0 114 chr4 126461574 126461644 -29168476 - B4A SINE B4 -152 140 79 1 1549 398 209 114 74 chr4 126461680 126461856 -29168264 + L1M5 LINE L1 3119 3301 -2845 1 1549 264 250 238 9 chr4 126461860 126461965 -29168155 + B3A SINE B2 2 130 -68 1 1549 1033 119 43 5 chr4 126462005 126462146 -29167974 + B2_Mm2 SINE B2 1 149 -46 1 1549 429 20 0 0 chr4 126462146 126462196 -29167924 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 1549 1033 119 43 5 chr4 126462196 126462240 -29167880 + B2_Mm2 SINE B2 150 192 -3 1 1549 510 278 9 0 chr4 126462246 126462361 -29167759 + PB1D7 SINE Alu 5 120 0 1 1549 457 194 264 0 chr4 126462570 126462699 -29167421 + MER58A DNA MER1_type 39 201 -23 1 1549 548 239 0 0 chr4 126462710 126462823 -29167297 + RSINE1 SINE B4 3 115 -50 1 1549 405 318 0 43 chr4 126462864 126462979 -29167141 - RSINE1 SINE B4 -6 159 50 1 1549 450 260 234 0 chr4 126463112 126463266 -29166854 - ID_B1 SINE B4 -8 216 27 1 1549 1264 27 0 0 chr4 126463358 126463505 -29166615 + B1_Mm SINE Alu 1 147 0 1 1549 1149 68 7 0 chr4 126463657 126463804 -29166316 + B1_Mus1 SINE Alu 1 148 0 1 1549 662 228 0 0 chr4 126464037 126464160 -29165960 + RSINE1 SINE B4 4 126 -39 1 1549 722 246 31 25 chr4 126464208 126464229 -29165891 - B3A SINE B2 -1 197 180 1 1549 360 43 0 0 chr4 126464229 126464275 -29165845 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 1 1549 722 246 31 25 chr4 126464275 126464449 -29165671 - B3A SINE B2 -19 179 1 1 1549 414 0 0 0 chr4 126465784 126465830 -29164290 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1549 798 122 23 0 chr4 126465841 126465972 -29164148 + B1_Mus1 SINE Alu 13 146 -2 1 1549 208 0 30 30 chr4 126465994 126466027 -29164093 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1549 262 283 84 65 chr4 126466693 126466848 -29163272 - B4A SINE B4 -13 279 122 1 1549 231 314 128 0 chr4 126467051 126467137 -29162983 + PB1D9 SINE Alu 1 97 -23 1 1549 398 253 0 0 chr4 126467066 126467145 -29162975 + ID_B1 SINE B4 105 183 -41 1 1549 229 238 105 23 chr4 126467157 126467243 -29162877 + B1F SINE Alu 21 113 -36 1 1549 238 261 58 0 chr4 126467267 126467336 -29162784 + ID4_ SINE ID 3 75 -8 1 1549 1354 191 150 46 chr4 126467396 126467482 -29162638 + MTC LTR MaLR 2 93 -328 1 1549 1059 81 149 6 chr4 126467482 126467643 -29162477 + B2_Mm2 SINE B2 3 186 -9 1 1549 1354 191 150 46 chr4 126467643 126467929 -29162191 + MTC LTR MaLR 94 413 -8 1 1549 1263 21 7 0 chr4 126468238 126468383 -29161737 + B1_Mm SINE Alu 2 147 0 1 1549 26 30 0 0 chr4 126468603 126468636 -29161484 + AT_rich Low_complexity Low_complexity 1 33 0 1 1549 606 164 103 0 chr4 126468799 126468915 -29161205 + B1_Mur1 SINE Alu 1 128 -21 1 1549 616 302 30 25 chr4 126470212 126470409 -29159711 - MIRb SINE MIR -28 240 43 1 1549 608 253 102 6 chr4 126470760 126470927 -29159193 - B3 SINE B2 -33 183 1 1 1549 614 275 161 24 chr4 126470931 126471229 -29158891 - Tigger7 DNA MER2_type -2076 415 77 1 1549 4014 224 75 86 chr4 126471327 126472612 -29157508 - Lx5 LINE L1 0 7050 5780 1 1549 36 0 0 0 chr4 126473104 126473140 -29156980 + AT_rich Low_complexity Low_complexity 1 36 0 1 1549 1199 48 0 0 chr4 126473140 126473286 -29156834 - B1_Mm SINE Alu 0 147 2 1 1549 250 255 0 19 chr4 126473291 126473343 -29156777 - B1_Mus1 SINE Alu -97 51 1 1 1549 252 0 0 0 chr4 126473386 126473414 -29156706 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1549 1263 88 35 0 chr4 126473415 126473585 -29156535 - B2_Mm1t SINE B2 -15 178 3 1 1549 694 95 0 0 chr4 126473773 126473868 -29156252 - L1_Mur2 LINE L1 -2266 3614 3520 1 1549 8044 65 9 0 chr4 126473873 126475276 -29154844 + L1_Mus1 LINE L1 5152 6566 -1 1 1549 28 0 0 0 chr4 126475276 126475304 -29154816 + AT_rich Low_complexity Low_complexity 1 28 0 1 1549 6446 139 25 84 chr4 126475383 126476496 -29153624 - L1_Mur2 LINE L1 -2396 3481 2459 1 1549 180 0 0 0 chr4 126476496 126476516 -29153604 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1549 6446 139 25 84 chr4 126476516 126476754 -29153366 - L1_Mur2 LINE L1 -3419 2458 2212 1 1549 1177 61 0 20 chr4 126476780 126476930 -29153190 + B1_Mus1 SINE Alu 2 148 0 1 1549 209 33 33 0 chr4 126476930 126476960 -29153160 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1549 1153 78 0 0 chr4 126477105 126477247 -29152873 - B1_Mus2 SINE Alu -5 142 1 1 1549 2422 161 65 42 chr4 126477525 126477699 -29152421 - L1_Mur2 LINE L1 -3871 2269 2061 1 1549 426 39 0 0 chr4 126477699 126477751 -29152369 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1549 2422 147 68 45 chr4 126477751 126478079 -29152041 - L1_Mur2 LINE L1 -3817 2060 1716 1 1549 1067 287 90 8 chr4 126478076 126478441 -29151679 - Lx8 LINE L1 -416 7057 6663 1 1549 330 26 0 0 chr4 126478447 126478486 -29151634 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1 1549 444 285 52 11 chr4 126478637 126478811 -29151309 - MER5A DNA MER1_type -8 181 1 1 1549 310 320 132 11 chr4 126479274 126479622 -29150498 - L2 LINE L2 -2203 1216 827 1 1549 430 286 47 7 chr4 126481619 126481767 -29148353 - MLT1A0 LTR MaLR 0 408 246 1 1549 389 219 81 32 chr4 126482692 126482815 -29147305 - B1_Mus1 SINE Alu -15 133 5 1 1549 618 241 128 5 chr4 126483075 126483271 -29146849 - ID_B1 SINE B4 -1 223 4 1 1549 614 132 5 12 chr4 126483402 126483541 -29146579 + B2_Mm2 SINE B2 36 172 -21 1 1549 259 204 75 100 chr4 126483568 126483688 -29146432 - L1M3 LINE L1 -2432 3708 3592 1 1549 1280 108 38 0 chr4 126483688 126483873 -29146247 - B2_Mm2 SINE B2 -2 193 2 1 1549 934 277 104 0 chr4 126484036 126484325 -29145795 - Tigger7 DNA MER2_type -2172 319 1 1 193 259 308 8 144 chr4 126484455 126484580 -29145540 - PB1D10 SINE Alu -9 108 1 1 1550 252 282 0 14 chr4 126484612 126484684 -29145436 - ID4 SINE ID -8 75 5 1 1550 215 170 0 21 chr4 126484743 126484791 -29145329 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 1550 252 0 0 0 chr4 126485801 126485829 -29144291 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1550 645 255 174 46 chr4 126486331 126486721 -29143399 + Lx8 LINE L1 7031 7470 -3 1 1550 1484 39 11 6 chr4 126486911 126487092 -29143028 + B2_Mm2 SINE B2 2 183 -12 1 1550 372 40 19 39 chr4 126487092 126487139 -29142981 - L1_Mur2 LINE L1 -2351 3526 3480 1 1550 420 270 209 28 chr4 126487175 126487316 -29142804 + L1MA10 LINE L1 4150 4328 -1818 1 1550 1308 110 22 0 chr4 126487316 126487498 -29142622 + B2_Mm2 SINE B2 1 186 -9 1 1550 420 270 209 28 chr4 126487498 126487676 -29142444 + L1MA10 LINE L1 4329 4527 -1619 1 1550 382 236 188 39 chr4 126487727 126487908 -29142212 + MLT1C LTR MaLR 60 267 -200 1 1550 314 91 0 0 chr4 126487909 126487953 -29142167 - ORR1D1 LTR MaLR 0 384 341 1 1550 2173 112 0 0 chr4 126487956 126488277 -29141843 + ORR1A3 LTR MaLR 6 326 0 1 1550 1295 163 119 78 chr4 126488282 126488602 -29141518 - ORR1D1 LTR MaLR -38 336 4 1 1550 297 254 149 113 chr4 126488602 126488729 -29141391 + MLT1C LTR MaLR 305 437 -68 1 1550 811 199 7 33 chr4 126488729 126488880 -29141240 - B1_Mur3 SINE Alu 0 149 3 1 1550 297 271 37 141 chr4 126488880 126488946 -29141174 + MLT1C LTR MaLR 401 467 0 1 1550 189 171 0 0 chr4 126489157 126489192 -29140928 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1550 213 39 0 0 chr4 126489192 126489218 -29140902 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1 1550 218 219 0 0 chr4 126489336 126489377 -29140743 + ID2 SINE ID 35 75 -8 1 1550 215 278 56 0 chr4 126489377 126489390 -29140730 + ID_B1 SINE B4 36 92 -132 1 1550 220 246 66 0 chr4 126489496 126489557 -29140563 + PB1D10 SINE Alu 37 101 -16 1 1550 277 269 102 50 chr4 126489558 126489821 -29140299 + L1MA10 LINE L1 5905 6330 -4 1 1550 345 259 12 112 chr4 126490085 126490102 -29140018 + ID_B1 SINE B4 80 224 0 1 1550 681 163 14 62 chr4 126490102 126490246 -29139874 + B1_Mur2 SINE Alu 12 148 -1 1 1550 706 311 83 69 chr4 126490247 126490755 -29139365 + L1ME1 LINE L1 5657 6171 -8 1 1550 865 195 0 12 chr4 126491004 126491165 -29138955 - B3 SINE B2 -57 159 1 1 1550 541 246 9 9 chr4 126491196 126491311 -29138809 - PB1D7 SINE Alu -1 119 5 1 1550 379 238 133 0 chr4 126491953 126492058 -29138062 + ID_B1 SINE B4 87 205 -19 1 1550 273 57 0 0 chr4 126492063 126492098 -29138022 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1550 3568 176 159 58 chr4 126494129 126495054 -29135066 - RMER1B Other Other -4 1062 45 1 1550 722 172 8 0 chr4 126495614 126495742 -29134378 + B3 SINE B2 2 130 -86 1 1550 25 0 0 0 chr4 126495773 126495798 -29134322 + AT_rich Low_complexity Low_complexity 1 25 0 1 1550 1159 34 7 7 chr4 126495813 126495959 -29134161 + B1_Mm SINE Alu 2 147 0 1 1550 489 271 86 0 chr4 126495978 126496129 -29133991 + RSINE1 SINE B4 1 164 -1 1 1550 338 192 0 16 chr4 126496131 126496258 -29133862 + (CAGA)n Simple_repeat Simple_repeat 2 126 0 1 1550 1179 138 37 0 chr4 126496432 126496620 -29133500 - B2_Mm2 SINE B2 0 195 1 1 1550 545 270 70 38 chr4 126496772 126496957 -29133163 + B3A SINE B2 1 191 -7 1 1550 454 191 22 9 chr4 126496962 126497067 -29133053 - PB1D9 SINE Alu -1 119 15 1 1550 1139 48 7 14 chr4 126497096 126497243 -29132877 - B1_Mus1 SINE Alu -1 147 2 1 1550 3550 244 90 42 chr4 126497456 126498015 -29132105 - Lx7 LINE L1 -3401 2479 2264 1 1550 405 0 0 0 chr4 126498015 126498060 -29132060 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1550 3550 186 160 22 chr4 126498060 126498829 -29131291 - Lx7 LINE L1 -3617 2263 1428 1 1550 1521 52 10 20 chr4 126498829 126499024 -29131096 - B2_Mm2 SINE B2 -1 194 2 1 1550 3550 186 160 22 chr4 126499024 126499072 -29131048 - Lx7 LINE L1 -4453 1427 1379 1 1550 624 216 8 8 chr4 126499108 126499234 -29130886 - B1_Mur4 SINE Alu -2 148 23 1 1550 243 0 0 0 chr4 126500611 126500638 -29129482 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1550 256 250 0 186 chr4 126501398 126501511 -29128609 - ID_B1 SINE B4 -49 175 84 2 1550 306 246 15 0 chr4 126501447 126501512 -29128608 - B1_Mus2 SINE Alu -80 67 2 3 1550 4548 98 162 58 chr4 126501538 126502359 -29127761 - RMER17A2 LTR ERVK 0 906 1 4 1550 256 335 117 43 chr4 126502913 126503032 -29127088 - MIRm SINE MIR -3 265 131 5 1550 1438 60 39 0 chr4 126503032 126503214 -29126906 + B2_Mm2 SINE B2 1 189 -6 6 1550 256 359 41 27 chr4 126503214 126503328 -29126792 - MIRm SINE MIR -146 130 13 5 1550 1242 90 67 0 chr4 126503454 126503632 -29126488 + B2_Mm2 SINE B2 1 190 -5 7 1550 202 370 20 7 chr4 126503930 126504077 -29126043 + (CAGGG)n Simple_repeat Simple_repeat 2 150 0 8 1550 270 355 24 0 chr4 126504125 126504294 -29125826 + (CAGGG)n Simple_repeat Simple_repeat 3 175 0 8 1550 236 339 9 9 chr4 126504280 126504457 -29125663 + (CAGGG)n Simple_repeat Simple_repeat 1 177 0 8 1550 239 303 37 0 chr4 126504561 126504670 -29125450 + L1M5 LINE L1 5714 5826 -414 9 1550 889 189 0 0 chr4 126504839 126504987 -29125133 + B1_Mur3 SINE Alu 1 148 -1 1 1550 249 57 0 0 chr4 126505208 126505243 -29124877 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1550 844 152 29 0 chr4 126505268 126505406 -29124714 - B1_Mus2 SINE Alu -2 145 4 1 1550 1035 193 5 28 chr4 126505413 126505467 -29124653 - B3 SINE B2 0 216 167 1 1550 384 22 0 0 chr4 126505467 126505512 -29124608 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1550 1035 193 5 28 chr4 126505512 126505675 -29124445 - B3 SINE B2 -50 166 5 1 1550 1235 49 0 0 chr4 126506621 126506765 -29123355 - B1_Mm SINE Alu -2 145 2 1 1550 420 134 0 0 chr4 126507416 126507483 -29122637 + B1_Mur3 SINE Alu 74 140 -9 1 1550 252 0 0 0 chr4 126507878 126507906 -29122214 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1550 384 318 0 96 chr4 126508118 126508285 -29121835 - B3A SINE B2 -1 197 47 1 1550 256 308 26 0 chr4 126508344 126508422 -29121698 + ID4_ SINE ID 1 80 -3 1 1550 364 194 147 9 chr4 126508486 126508595 -29121525 - RSINE1 SINE B4 -38 127 4 2 1550 287 142 50 41 chr4 126508602 126508692 -29121428 - L1M5 LINE L1 -2413 5469 5386 2 1550 1270 34 0 0 chr4 126508706 126508853 -29121267 + B1_Mm SINE Alu 1 147 0 2 1550 234 125 0 0 chr4 126508858 126508906 -29121214 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 1550 1105 58 0 41 chr4 126508929 126509074 -29121046 - B1_Mm SINE Alu -8 139 1 2 1550 1054 117 0 0 chr4 126509774 126509919 -29120201 - B1_Mus2 SINE Alu 0 147 3 2 1550 1390 76 33 0 chr4 126510060 126510244 -29119876 + B2_Mm2 SINE B2 1 190 -5 2 1550 576 156 0 0 chr4 126510441 126510550 -29119570 + (CA)n Simple_repeat Simple_repeat 2 110 0 2 1550 195 42 0 0 chr4 126510751 126510775 -29119345 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1550 318 274 167 0 chr4 126511052 126511136 -29118984 + PB1D10 SINE Alu 1 98 -19 2 1550 189 0 0 0 chr4 126511140 126511161 -29118959 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 3 1550 464 242 170 0 chr4 126511201 126511354 -29118766 - MIR SINE MIR -3 259 81 3 1550 440 147 0 74 chr4 126512254 126512335 -29117785 + PB1D9 SINE Alu 14 88 -32 3 1550 1236 54 0 0 chr4 126514809 126514956 -29115164 - B1_Mus2 SINE Alu 0 147 1 3 1550 1140 99 111 0 chr4 126514959 126515131 -29114989 - B2_Mm2 SINE B2 -4 191 1 3 1550 782 63 27 0 chr4 126515377 126515488 -29114632 + (CAAAG)n Simple_repeat Simple_repeat 4 117 0 3 1550 489 62 0 0 chr4 126515768 126515833 -29114287 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1550 210 37 0 0 chr4 126515833 126515859 -29114261 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1550 659 156 42 12 chr4 126519087 126519256 -29110864 + B3 SINE B2 15 195 0 3 1550 250 282 41 27 chr4 126520673 126520746 -29109374 - ID_B1 SINE B4 -29 195 122 3 1550 1225 68 9 99 chr4 126520746 126520958 -29109162 - B2_Mm2 SINE B2 -1 194 2 4 1550 774 67 0 37 chr4 126521211 126521319 -29108801 - B1_Mur4 SINE Alu 0 150 47 4 1550 511 289 83 12 chr4 126521570 126521738 -29108382 - B3A SINE B2 -5 193 14 4 1550 290 45 23 0 chr4 126521759 126521803 -29108317 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1550 676 261 0 0 chr4 126522118 126522248 -29107872 + RSINE1 SINE B4 3 132 -33 4 1550 619 199 94 14 chr4 126522344 126522482 -29107638 - B1_Mur1 SINE Alu 0 149 1 4 1550 241 277 84 11 chr4 126523808 126523903 -29106217 + Charlie4a DNA MER1_type 36 137 -371 4 1550 756 163 8 31 chr4 126524760 126524887 -29105233 + B1_Mus1 SINE Alu 15 138 -10 4 1550 583 125 124 70 chr4 126526862 126526991 -29103129 - BC1_Mm scRNA scRNA -15 137 2 4 1550 372 104 0 0 chr4 126527033 126527100 -29103020 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1550 450 0 0 0 chr4 126527100 126527150 -29102970 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1550 24 32 0 0 chr4 126529449 126529480 -29100640 + AT_rich Low_complexity Low_complexity 1 31 0 5 1550 930 116 7 0 chr4 126529484 126529622 -29100498 + B1_Mus1 SINE Alu 9 147 -1 5 1550 446 264 54 60 chr4 126529647 126529796 -29100324 - B3 SINE B2 -67 149 2 5 1550 1156 75 0 0 chr4 126529926 126530073 -29100047 - B1_Mus1 SINE Alu 0 148 2 5 1550 449 274 28 0 chr4 126532279 126532385 -29097735 + PB1D7 SINE Alu 4 112 -8 5 1550 314 245 116 54 chr4 126532390 126532502 -29097618 + B3A SINE B2 2 120 -78 5 1550 180 77 0 0 chr4 126532512 126532538 -29097582 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1550 21 0 0 0 chr4 126532538 126532559 -29097561 + AT_rich Low_complexity Low_complexity 1 21 0 5 1550 1285 75 6 6 chr4 126532627 126532643 -29097477 - B2_Mm1a SINE B2 -19 174 159 5 1550 450 0 0 0 chr4 126532643 126532693 -29097427 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 6 1550 1285 75 6 6 chr4 126532693 126532849 -29097271 - B2_Mm1a SINE B2 -35 158 2 5 1550 1267 75 35 51 chr4 126532883 126533080 -29097040 + B2_Mm2 SINE B2 2 195 0 6 1550 277 295 61 49 chr4 126533161 126533243 -29096877 + B1F SINE Alu 30 112 -37 6 1550 537 182 189 14 chr4 126533869 126534024 -29096096 + B3 SINE B2 1 188 -7 6 1550 1432 80 5 0 chr4 126534126 126534314 -29095806 + B2_Mm1a SINE B2 2 190 -3 6 1550 2848 135 63 66 chr4 126534420 126535023 -29095097 + RMER6A LTR ERVK 156 756 0 6 1550 2163 63 17 7 chr4 126535374 126535663 -29094457 - L1_Mus2 LINE L1 0 6566 6275 6 1550 726 246 141 15 chr4 126535768 126535974 -29094146 + ORR1D1 LTR MaLR 1 232 -142 6 1550 322 340 44 19 chr4 126536116 126536275 -29093845 + RSINE1 SINE B4 3 165 0 6 1550 415 307 49 14 chr4 126536472 126536614 -29093506 + RSINE1 SINE B4 11 157 -8 6 1550 1990 208 163 72 chr4 126536642 126537897 -29092223 - RMER1B Other Other -6 1060 45 7 1550 24 32 0 0 chr4 126539126 126539157 -29090963 + AT_rich Low_complexity Low_complexity 1 31 0 7 1550 591 269 14 7 chr4 126541779 126541921 -29088199 + ID_B1 SINE B4 82 224 0 7 1550 395 137 14 0 chr4 126541924 126541997 -29088123 + GA-rich Low_complexity Low_complexity 4 77 0 7 1550 664 123 19 19 chr4 126542339 126542447 -29087673 + PB1D9 SINE Alu 13 120 0 7 1550 194 224 68 17 chr4 126542961 126543020 -29087100 - L2a LINE L2 -1 3425 3364 7 1550 390 74 0 0 chr4 126543409 126543463 -29086657 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1550 335 339 17 52 chr4 126543498 126543613 -29086507 - RSINE1 SINE B4 -43 122 12 7 1550 536 279 77 7 chr4 126543607 126543762 -29086358 - B4A SINE B4 -63 229 64 7 1550 209 57 29 0 chr4 126543787 126543822 -29086298 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1550 805 40 0 0 chr4 126543833 126543934 -29086186 - B1_Mus1 SINE Alu -42 106 6 8 1550 567 225 75 29 chr4 126543835 126544009 -29086111 - ID_B1 SINE B4 -41 183 2 8 1550 766 185 67 12 chr4 126544027 126544191 -29085929 - B3 SINE B2 0 216 44 8 1550 419 252 49 32 chr4 126544458 126544581 -29085539 + B1F SINE Alu 18 142 -7 8 1550 294 274 64 36 chr4 126544869 126544979 -29085141 + PB1D10 SINE Alu 5 117 0 8 1550 1029 45 76 0 chr4 126544982 126545114 -29085006 + B1_Mus1 SINE Alu 2 143 -5 8 1550 207 0 0 0 chr4 126545117 126545140 -29084980 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1550 1064 106 32 43 chr4 126545570 126545757 -29084363 - B2_Mm2 SINE B2 -9 186 2 8 1550 304 181 181 0 chr4 126546408 126546502 -29083618 - MER58B DNA MER1_type -152 189 79 8 1550 25 51 0 0 chr4 126546546 126546585 -29083535 + AT_rich Low_complexity Low_complexity 1 39 0 8 1550 24 77 0 0 chr4 126547367 126547419 -29082701 + AT_rich Low_complexity Low_complexity 1 52 0 9 1550 308 327 101 32 chr4 126547798 126547956 -29082164 + B3 SINE B2 9 177 -39 9 1550 831 275 19 14 chr4 126548142 126548356 -29081764 + B3 SINE B2 1 215 -1 9 1550 511 225 71 93 chr4 126548398 126548542 -29081578 + B3 SINE B2 37 192 -24 9 1550 1033 119 46 61 chr4 126548542 126548738 -29081382 + B2_Mm2 SINE B2 1 193 -2 9 1550 511 219 52 105 chr4 126548738 126548768 -29081352 + B3 SINE B2 193 216 0 9 1550 514 237 97 0 chr4 126548881 126548995 -29081125 - B1_Mur2 SINE Alu -12 137 13 9 1550 843 169 0 20 chr4 126549047 126549198 -29080922 + B1_Mur4 SINE Alu 1 148 -2 9 1550 331 247 129 67 chr4 126549364 126549542 -29080578 - B2_Mm2 SINE B2 -4 191 3 9 1550 229 309 23 69 chr4 126549759 126549846 -29080274 - ID4_ SINE ID 0 83 1 9 1550 244 308 0 0 chr4 126550032 126550097 -29080023 + L1M5 LINE L1 4074 4138 -2008 9 1550 246 242 48 16 chr4 126550344 126550407 -29079713 + B3A SINE B2 2 66 -132 1 1550 25 0 0 0 chr4 126550449 126550474 -29079646 + AT_rich Low_complexity Low_complexity 1 25 0 1 1550 306 125 0 0 chr4 126550545 126550593 -29079527 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1550 1137 36 0 0 chr4 126550602 126550741 -29079379 - B1_Mus2 SINE Alu 0 147 9 1 1550 291 256 23 23 chr4 126550642 126550774 -29079346 - ORR1B1-int LTR MaLR -755 754 623 1 1550 699 158 7 58 chr4 126550741 126550755 -29079365 - ID_B1 SINE B4 0 222 78 1 1550 451 216 108 0 chr4 126550901 126551003 -29079117 + B3 SINE B2 3 115 -101 1 1550 351 303 11 0 chr4 126551055 126551144 -29078976 - B4A SINE B4 -200 92 3 1 1550 350 227 91 20 chr4 126551211 126551310 -29078810 + MTEb LTR MaLR 1 106 -253 1 1550 416 268 85 23 chr4 126551388 126551518 -29078602 + MTEb LTR MaLR 242 379 0 1 1550 468 267 29 29 chr4 126551524 126551694 -29078426 + L1MA7 LINE L1 5759 5928 -363 1 1550 612 257 35 14 chr4 126551816 126551958 -29078162 + RSINE1 SINE B4 6 150 -15 1 1550 1209 55 0 0 chr4 126552001 126552147 -29077973 + B1_Mus2 SINE Alu 2 147 0 1 1550 455 212 2 4 chr4 126552259 126552352 -29077768 - B3A SINE B2 -124 92 1 1 1550 233 244 96 12 chr4 126552540 126552623 -29077497 - B1F2 SINE Alu -23 126 37 1 1550 415 179 39 32 chr4 126552625 126552781 -29077339 + GA-rich Low_complexity Low_complexity 5 161 0 1 1550 486 312 83 22 chr4 126552876 126553056 -29077064 + B4A SINE B4 1 191 -101 1 1550 754 260 11 29 chr4 126553229 126553403 -29076717 + B3 SINE B2 1 171 -45 1 1550 421 167 51 0 chr4 126553389 126553467 -29076653 - B2_Mm2 SINE B2 -111 84 3 1 1550 656 241 43 0 chr4 126553497 126553638 -29076482 - B1_Mur3 SINE Alu -1 148 2 1 1550 278 232 22 109 chr4 126553556 126553648 -29076472 - MT2B LTR ERVL -363 238 155 1 1550 288 327 9 26 chr4 126553826 126553939 -29076181 - PB1D10 SINE Alu -2 115 5 1 1550 1169 62 7 0 chr4 126554483 126554629 -29075491 - B1_Mus1 SINE Alu -1 147 1 1 1550 458 230 0 48 chr4 126555156 126555261 -29074859 + PB1D10 SINE Alu 17 116 -1 1 1550 618 219 24 8 chr4 126555383 126555507 -29074613 + B1_Mur2 SINE Alu 1 126 -23 1 1550 182 164 18 0 chr4 126555507 126555562 -29074558 + GA-rich Low_complexity Low_complexity 2 57 0 1 1550 201 39 0 0 chr4 126555798 126555824 -29074296 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 1 1550 828 145 13 33 chr4 126556565 126556715 -29073405 - B1_Mus1 SINE Alu 0 148 2 1 1550 3732 182 55 14 chr4 126557161 126557864 -29072256 + ORR1D1-int LTR MaLR 639 1370 0 1 1550 753 206 60 0 chr4 126557864 126558095 -29072025 + ORR1D1 LTR MaLR 1 321 -53 1 1550 889 213 4 92 chr4 126558328 126558361 -29071759 + B3 SINE B2 1 23 -193 1 1550 1370 74 16 11 chr4 126558361 126558552 -29071568 + B2_Mm2 SINE B2 1 192 -3 1 1550 889 213 4 92 chr4 126558552 126558746 -29071374 + B3 SINE B2 24 208 -8 1 1550 1243 169 29 10 chr4 126559195 126559404 -29070716 + B3 SINE B2 1 213 -3 1 1550 350 302 120 8 chr4 126560011 126560128 -29069992 + ID_B1 SINE B4 87 216 -8 1 1550 210 71 0 0 chr4 126560580 126560608 -29069512 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 1 1550 608 257 7 0 chr4 126560689 126560825 -29069295 + B1_Mur1 SINE Alu 13 149 0 1 1550 342 138 0 0 chr4 126561052 126561110 -29069010 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1550 760 270 39 10 chr4 126561450 126561656 -29068464 + B3 SINE B2 5 216 0 1 1550 563 261 15 187 chr4 126561841 126561974 -29068146 + ID_B1 SINE B4 2 223 -1 1 1550 949 38 7 37 chr4 126561974 126562109 -29068011 + B1_Mm SINE Alu 17 147 0 1 1550 182 0 107 0 chr4 126562116 126562144 -29067976 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1550 211 222 123 53 chr4 126562202 126562259 -29067861 + B1F2 SINE Alu 2 62 -87 1 1550 416 269 155 17 chr4 126562692 126562866 -29067254 + B3A SINE B2 1 198 0 1 1550 391 348 50 28 chr4 126562913 126563274 -29066846 + L1ME1 LINE L1 4793 5161 -985 1 1550 1149 124 0 0 chr4 126563285 126563454 -29066666 + B2_Mm2 SINE B2 1 169 -26 1 1550 609 292 129 17 chr4 126563921 126564315 -29065805 + L1ME1 LINE L1 5495 5948 -231 1 1550 243 0 0 0 chr4 126564478 126564505 -29065615 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1550 1145 22 0 7 chr4 126564505 126564642 -29065478 - B1_Mus2 SINE Alu -11 136 1 1 1550 1098 240 53 19 chr4 126564676 126564999 -29065121 + Lx7 LINE L1 6998 7331 -365 1 1550 1356 90 0 16 chr4 126565148 126565339 -29064781 + B2_Mm2 SINE B2 1 188 -7 1 1550 247 239 0 0 chr4 126565428 126565474 -29064646 - RSINE1 SINE B4 -117 48 3 1 1550 769 177 24 0 chr4 126565626 126565750 -29064370 - B1_Mus1 SINE Alu 0 148 22 1 1550 337 225 35 97 chr4 126565650 126565763 -29064357 - MT2B LTR ERVL -323 278 173 1 1550 259 291 0 0 chr4 126565848 126565903 -29064217 - B3A SINE B2 -143 55 1 1 1550 249 259 0 17 chr4 126566032 126566091 -29064029 - RSINE1 SINE B4 -105 60 3 1 1550 718 234 91 55 chr4 126566119 126566318 -29063802 - B3 SINE B2 -3 213 8 1 1550 1219 27 0 7 chr4 126566495 126566643 -29063477 + B1_Mus2 SINE Alu 1 147 0 1 1550 679 275 63 117 chr4 126567543 126567843 -29062277 + B4 SINE B4 3 286 -6 1 1550 590 89 0 11 chr4 126567901 126567992 -29062128 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1550 485 265 65 41 chr4 126569402 126569571 -29060549 + B3A SINE B2 24 196 -2 1 1550 234 312 34 43 chr4 126569721 126569838 -29060282 + PB1D10 SINE Alu 1 116 -1 1 1550 242 331 112 8 chr4 126570084 126570209 -29059911 + MIRb SINE MIR 57 194 -74 1 1550 258 32 0 0 chr4 126570745 126570776 -29059344 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1550 976 274 34 38 chr4 126570776 126571042 -29059078 - B4A SINE B4 -25 267 3 1 1550 883 162 7 7 chr4 126571196 126571345 -29058775 + B1_Mur4 SINE Alu 1 149 -1 1 1550 195 139 0 0 chr4 126571345 126571381 -29058739 + (CAAG)n Simple_repeat Simple_repeat 1 36 0 1 1550 543 229 22 51 chr4 126571386 126571524 -29058596 + B1_Mur1 SINE Alu 8 141 -8 1 1550 291 257 100 0 chr4 126571828 126571898 -29058222 - RSINE1 SINE B4 -44 121 45 1 1550 642 241 102 46 chr4 126572011 126572207 -29057913 - B3 SINE B2 -7 209 3 1 1550 764 191 14 0 chr4 126572173 126572314 -29057806 - B1F SINE Alu 0 149 7 1 1550 762 194 21 0 chr4 126572717 126572861 -29057259 + B1_Mus1 SINE Alu 2 148 0 1 1550 416 277 122 28 chr4 126572885 126573205 -29056915 + L1M2 LINE L1 4977 5326 -817 1 1550 294 318 28 106 chr4 126573514 126573574 -29056546 + L1M2 LINE L1 5383 5440 -728 1 1550 809 255 34 5 chr4 126573574 126573783 -29056337 + B3 SINE B2 2 216 0 1 1550 375 269 65 36 chr4 126573783 126573940 -29056180 + L1M2 LINE L1 5428 5583 -585 1 1550 557 281 82 34 chr4 126574444 126574650 -29055470 + B3 SINE B2 1 216 0 1 1550 380 343 14 20 chr4 126574652 126574798 -29055322 + L1M4b LINE L1 395 539 -6795 1 1550 814 129 42 28 chr4 126574892 126575035 -29055085 - B1_Mur4 SINE Alu 0 150 6 1 1550 304 259 38 126 chr4 126574895 126575054 -29055066 - B4A SINE B4 -68 224 80 1 1550 288 0 0 0 chr4 126575128 126575160 -29054960 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1550 234 0 0 0 chr4 126575160 126575185 -29054935 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1550 237 65 0 0 chr4 126575691 126575722 -29054398 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1550 1195 28 7 0 chr4 126575946 126576091 -29054029 + B1_Mus2 SINE Alu 2 147 0 1 1550 1586 16 0 73 chr4 126576458 126576663 -29053457 + B2_Mm1a SINE B2 2 191 -2 1 1550 1312 97 21 0 chr4 126576730 126576916 -29053204 + B2_Mm2 SINE B2 2 191 -4 1 1550 2000 151 67 11 chr4 126577420 126577796 -29052324 + RMER10B LTR ERVL 2 398 0 1 1550 275 224 0 17 chr4 126578132 126578191 -29051929 + U2 snRNA snRNA 1 58 -130 1 1550 347 0 23 0 chr4 126578520 126578563 -29051557 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1 1550 1160 83 0 0 chr4 126578563 126578720 -29051400 - B2_Mm2 SINE B2 -38 157 1 1 1550 341 271 12 0 chr4 126578768 126578853 -29051267 - B1F SINE Alu -11 138 53 1 1550 305 138 50 0 chr4 126578868 126578948 -29051172 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1550 351 0 0 0 chr4 126578950 126578989 -29051131 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1550 407 235 168 34 chr4 126579161 126579280 -29050840 + B1_Mur3 SINE Alu 2 136 -13 1 1550 780 154 0 0 chr4 126579386 126579503 -29050617 - PB1D9 SINE Alu -3 117 1 1 1550 441 162 0 116 chr4 126579594 126579706 -29050414 + MT2B LTR ERVL 166 264 -337 1 1550 1013 45 8 0 chr4 126579608 126579740 -29050380 + B1_Mus2 SINE Alu 15 147 0 1 1550 1121 167 28 19 chr4 126579978 126580192 -29049928 + B3 SINE B2 1 216 0 1 1550 21 57 0 0 chr4 126580279 126580314 -29049806 + AT_rich Low_complexity Low_complexity 1 35 0 1 1550 231 319 43 11 chr4 126580504 126580596 -29049524 - B4 SINE B4 -41 251 157 1 1550 250 317 12 0 chr4 126580638 126580720 -29049400 - B4A SINE B4 -208 84 2 1 1550 1164 113 11 22 chr4 126580798 126580979 -29049141 + B2_Mm1t SINE B2 1 179 -14 1 1550 312 172 450 10 chr4 126581064 126581164 -29048956 + B2_Mm2 SINE B2 47 191 -2 1 1550 421 250 24 55 chr4 126581203 126581330 -29048790 + RSINE1 SINE B4 41 163 -2 1 1550 24 32 0 0 chr4 126581349 126581380 -29048740 + AT_rich Low_complexity Low_complexity 1 31 0 1 1550 24 0 0 0 chr4 126581452 126581476 -29048644 + AT_rich Low_complexity Low_complexity 1 24 0 1 1550 532 232 23 60 chr4 126582763 126582896 -29047224 + B1F2 SINE Alu 15 142 -7 1 1550 219 36 0 0 chr4 126585623 126585651 -29044469 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 2 1550 508 255 13 66 chr4 126585776 126585927 -29044193 - B1_Mur1 SINE Alu -4 145 3 2 1550 24 0 0 0 chr4 126586119 126586143 -29043977 + AT_rich Low_complexity Low_complexity 1 24 0 2 1550 307 129 30 61 chr4 126586234 126586300 -29043820 + B1_Mur1 SINE Alu 86 149 0 2 1550 971 186 16 109 chr4 126586485 126586583 -29043537 - URR1B DNA MER1_type 0 225 148 2 1550 1199 55 0 0 chr4 126586583 126586729 -29043391 - B1_Mus2 SINE Alu 0 147 2 2 1550 971 186 16 109 chr4 126586729 126586878 -29043242 - URR1B DNA MER1_type -78 147 1 2 1550 270 193 0 0 chr4 126587126 126587183 -29042937 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1550 186 103 0 0 chr4 126587187 126587216 -29042904 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1550 469 314 57 0 chr4 126587396 126587536 -29042584 + B1F2 SINE Alu 1 148 -1 2 1550 739 108 131 0 chr4 126587565 126587695 -29042425 - B1_Mus1 SINE Alu 0 148 2 2 1550 412 236 18 45 chr4 126587724 126587835 -29042285 - PB1D9 SINE Alu -12 108 1 2 1550 1665 16 0 20 chr4 126588666 126588862 -29041258 + B2_Mm1a SINE B2 1 192 -1 2 1550 761 200 148 11 chr4 126588870 126589052 -29041068 - B3 SINE B2 -9 207 1 2 1550 303 286 54 92 chr4 126589202 126589412 -29040708 - B4A SINE B4 -4 288 101 2 1550 1161 61 0 0 chr4 126589562 126589710 -29040410 + B1_Mus1 SINE Alu 1 148 0 2 1550 814 272 51 0 chr4 126589909 126590104 -29040016 - B3 SINE B2 -11 205 1 2 1550 606 230 0 0 chr4 126590227 126590375 -29039745 + (TA)n Simple_repeat Simple_repeat 2 149 0 2 1550 588 307 13 7 chr4 126590395 126590546 -29039574 + B4 SINE B4 4 155 -137 2 1550 1555 53 0 0 chr4 126590645 126590832 -29039288 - B2_Mm1a SINE B2 -6 187 1 2 1550 714 141 88 15 chr4 126591711 126591848 -29038272 - B1_Mus1 SINE Alu 0 148 2 2 1550 575 194 0 23 chr4 126591891 126592023 -29038097 + B1_Mur4 SINE Alu 1 129 -21 2 1550 186 133 0 0 chr4 126592575 126592605 -29037515 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1550 25 31 0 0 chr4 126592615 126592647 -29037473 + AT_rich Low_complexity Low_complexity 1 32 0 2 1550 639 211 67 76 chr4 126593585 126593795 -29036325 - B3 SINE B2 -6 210 3 2 1550 479 296 61 0 chr4 126594213 126594345 -29035775 - B1F2 SINE Alu 0 149 10 2 1550 343 285 30 68 chr4 126594364 126594496 -29035624 + MER96B DNA hAT 111 237 -180 2 1550 977 136 0 0 chr4 126594660 126594807 -29035313 - B1_Mus2 SINE Alu 0 147 1 2 1550 951 194 0 29 chr4 126595089 126595264 -29034856 - MER58B DNA MER1_type 0 341 172 2 1550 338 74 29 14 chr4 126595386 126595455 -29034665 - L1Md_F2 LINE L1 0 6582 6513 2 1550 234 0 0 0 chr4 126595780 126595806 -29034314 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1550 1575 42 5 0 chr4 126596222 126596412 -29033708 + B2_Mm1t SINE B2 2 192 -1 2 1550 672 246 22 0 chr4 126596490 126596628 -29033492 - B1_Mur1 SINE Alu -7 142 2 2 1550 183 42 0 0 chr4 126597419 126597443 -29032677 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1550 599 313 23 23 chr4 126599172 126599391 -29030729 + MER20 DNA MER1_type 1 219 0 2 1550 23 33 0 0 chr4 126600497 126600527 -29029593 + AT_rich Low_complexity Low_complexity 1 30 0 2 1550 294 292 0 14 chr4 126601263 126601336 -29028784 + ID4_ SINE ID 2 73 -10 2 1550 284 279 50 12 chr4 126601366 126601446 -29028674 + B1F SINE Alu 2 84 -65 2 1550 25 0 0 0 chr4 126601669 126601694 -29028426 + AT_rich Low_complexity Low_complexity 1 25 0 2 1550 311 220 11 0 chr4 126601694 126601785 -29028335 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1550 580 167 314 58 chr4 126604020 126604192 -29025928 + B3 SINE B2 1 216 0 2 1550 461 302 170 0 chr4 126605097 126605256 -29024864 + B3 SINE B2 22 207 -9 2 1550 479 232 0 35 chr4 126605270 126605386 -29024734 + B1_Mm SINE Alu 25 136 -11 2 1550 23 33 0 0 chr4 126605386 126605416 -29024704 + AT_rich Low_complexity Low_complexity 1 30 0 2 1550 517 215 6 196 chr4 126605511 126605679 -29024441 - B1_Mur3 SINE Alu 0 149 14 2 1550 1641 21 11 0 chr4 126606349 126606540 -29023580 + B2_Mm1t SINE B2 1 193 0 2 1550 764 223 0 7 chr4 126607138 126607287 -29022833 - B1_Mus1 SINE Alu 0 148 1 2 1550 28 0 0 0 chr4 126607296 126607324 -29022796 + AT_rich Low_complexity Low_complexity 1 28 0 2 1550 290 307 145 55 chr4 126607388 126607533 -29022587 + RSINE1 SINE B4 7 164 -1 2 1550 1084 206 63 16 chr4 126607841 126608093 -29022027 + RLTR42-int LTR ERVK 1105 1368 -4154 2 1550 452 157 0 0 chr4 126608094 126608164 -29021956 - B2_Mm2 SINE B2 -125 70 1 2 1550 185 360 80 99 chr4 126608256 126608518 -29021602 - L2 LINE L2 -998 2421 2165 2 1550 1824 108 36 115 chr4 126608651 126608939 -29021181 + ORR1A4 LTR MaLR 1 264 -65 2 1550 1067 115 0 0 chr4 126608939 126609087 -29021033 - B1_Mus1 SINE Alu 0 148 1 2 1550 1824 108 36 115 chr4 126609087 126609155 -29020965 + ORR1A4 LTR MaLR 265 329 0 2 1550 573 252 48 41 chr4 126609374 126609519 -29020601 - B3 SINE B2 -1 215 70 2 1550 1200 28 21 0 chr4 126609643 126609787 -29020333 + B1_Mus2 SINE Alu 1 147 0 2 1550 197 98 0 24 chr4 126609798 126609840 -29020280 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1550 697 214 45 21 chr4 126609854 126610050 -29020070 + B3 SINE B2 2 188 -7 2 1550 207 214 18 18 chr4 126610288 126610345 -29019775 + L2 LINE L2 1719 1775 -1644 2 1550 789 263 14 19 chr4 126610383 126610596 -29019524 + B3 SINE B2 2 213 -3 2 1550 1253 7 20 0 chr4 126610674 126610826 -29019294 + B2_Mm1a SINE B2 2 156 -37 2 1550 419 0 0 19 chr4 126610826 126610878 -29019242 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 2 1550 273 155 0 17 chr4 126610943 126611002 -29019118 + GA-rich Low_complexity Low_complexity 5 62 0 2 1550 634 167 0 19 chr4 126611004 126611108 -29019012 + B1_Mur4 SINE Alu 43 144 -6 2 1550 324 120 0 0 chr4 126611109 126611159 -29018961 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 2 1550 294 333 25 106 chr4 126611217 126611378 -29018742 + RSINE1 SINE B4 18 165 0 2 1550 637 186 34 41 chr4 126611434 126611580 -29018540 - B1_Mur3 SINE Alu 0 149 5 2 1550 2815 139 176 0 chr4 126611645 126611938 -29018182 + RMER2 LTR ERV1 1 359 -208 2 1550 279 0 0 0 chr4 126611938 126611969 -29018151 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1550 2815 139 176 0 chr4 126611969 126612157 -29017963 + RMER2 LTR ERV1 360 565 -2 2 1550 25 31 0 0 chr4 126612158 126612190 -29017930 + AT_rich Low_complexity Low_complexity 1 32 0 2 1550 296 290 0 28 chr4 126612273 126612344 -29017776 - B4A SINE B4 -2 290 222 2 1550 275 157 0 0 chr4 126612420 126612471 -29017649 + MT2B LTR ERVL 1 51 -550 2 1550 23 0 0 0 chr4 126612484 126612507 -29017613 + AT_rich Low_complexity Low_complexity 1 23 0 2 1550 319 109 0 0 chr4 126612914 126612969 -29017151 - MT2A LTR ERVL 0 533 479 2 1550 845 240 17 11 chr4 126612969 126613146 -29016974 - B3 SINE B2 -37 179 2 2 1550 1212 57 0 0 chr4 126613341 126613481 -29016639 + B1_Mus1 SINE Alu 3 142 -6 2 1550 509 259 62 21 chr4 126613506 126613699 -29016421 + L1M3 LINE L1 5151 5351 -789 2 1550 1308 41 0 0 chr4 126613874 126614021 -29016099 + B1_Mus2 SINE Alu 1 147 0 2 1550 198 0 0 0 chr4 126614024 126614046 -29016074 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1550 420 217 111 19 chr4 126614295 126614403 -29015717 - B1_Mus1 SINE Alu -29 119 2 2 1550 1972 293 93 30 chr4 126614424 126614985 -29015135 - L1M3 LINE L1 -1087 5053 4458 2 1550 1379 99 20 20 chr4 126614985 126615180 -29014940 - B2_Mm2 SINE B2 0 195 1 2 193 1972 293 93 30 chr4 126615180 126615686 -29014434 - L1M3 LINE L1 -1683 4457 3919 2 1551 1455 193 98 39 chr4 126615755 126616165 -29013955 - RMER10A LTR ERVL -2 440 7 2 1551 371 54 50 13 chr4 126616394 126616463 -29013657 + B1_Mus2 SINE Alu 61 147 0 2 1551 667 288 107 56 chr4 126616466 126616970 -29013150 - L1M3 LINE L1 -2585 3558 3029 2 1551 1372 89 17 6 chr4 126616973 126617154 -29012966 - B2_Mm2 SINE B2 -11 184 2 2 1551 592 191 58 12 chr4 126617159 126617286 -29012834 - B1_Mur1 SINE Alu 0 149 18 2 1551 1484 86 16 0 chr4 126617309 126617495 -29012625 - B2_Mm2 SINE B2 -6 189 1 2 1551 207 0 0 0 chr4 126617508 126617531 -29012589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1551 1210 51 0 0 chr4 126617531 126617669 -29012451 - B1_Mus1 SINE Alu -10 138 1 2 1551 648 255 48 105 chr4 126617674 126617902 -29012218 - B3 SINE B2 0 216 2 2 1551 258 313 60 0 chr4 126618070 126618153 -29011967 - L1M3 LINE L1 -3453 2687 2600 2 1551 306 87 0 0 chr4 126618524 126618570 -29011550 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1551 1314 117 21 0 chr4 126618612 126618800 -29011320 + B2_Mm1t SINE B2 2 193 0 2 1551 1218 62 0 0 chr4 126618810 126618956 -29011164 + B1_Mus2 SINE Alu 2 147 0 2 1551 930 176 0 0 chr4 126618978 126619126 -29010994 + B1_Mus1 SINE Alu 1 148 0 2 1551 338 256 15 0 chr4 126619198 126619285 -29010835 - B3 SINE B2 -109 89 1 2 1551 401 287 25 25 chr4 126619301 126619419 -29010701 - B1F1 SINE Alu 0 149 32 2 1551 513 270 132 24 chr4 126619510 126619677 -29010443 + B3A SINE B2 1 185 -13 2 1551 487 267 8 24 chr4 126619690 126619804 -29010316 + B1_Mur4 SINE Alu 30 141 -9 2 1551 837 47 0 0 chr4 126619804 126619910 -29010210 + (TAG)n Simple_repeat Simple_repeat 2 107 0 2 1551 1223 62 0 0 chr4 126620031 126620176 -29009944 - B1_Mus1 SINE Alu -1 147 3 2 1551 694 172 103 15 chr4 126620180 126620316 -29009804 - B1_Mus1 SINE Alu 0 148 1 2 1551 355 253 358 41 chr4 126620528 126620627 -29009493 + RMER15 LTR ERVL 63 169 -406 3 1551 1239 61 0 0 chr4 126620627 126620774 -29009346 + B1_Mus1 SINE Alu 2 148 0 3 1551 355 253 358 41 chr4 126620774 126620917 -29009203 + RMER15 LTR ERVL 170 381 -194 3 1551 423 56 0 0 chr4 126620931 126620985 -29009135 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 3 1551 234 0 0 0 chr4 126621003 126621029 -29009091 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 3 1551 287 256 84 12 chr4 126621045 126621128 -29008992 + RMER15 LTR ERVL 451 539 -36 3 1551 573 55 0 0 chr4 126621216 126621289 -29008831 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1551 1147 88 0 39 chr4 126621317 126621470 -29008650 + B1_Mm SINE Alu 1 147 0 3 1551 695 164 18 0 chr4 126621506 126621616 -29008504 - B1_Mur3 SINE Alu -37 112 1 3 1551 25 31 0 0 chr4 126621714 126621746 -29008374 + AT_rich Low_complexity Low_complexity 1 32 0 3 1551 244 276 44 44 chr4 126621760 126621851 -29008269 + RSINE1 SINE B4 13 103 -62 3 1551 403 313 53 8 chr4 126622113 126622245 -29007875 + ID_B1 SINE B4 81 218 -6 3 1551 1137 186 30 0 chr4 126622458 126622657 -29007463 + B3 SINE B2 8 212 -4 3 1551 25 0 0 0 chr4 126622657 126622682 -29007438 + AT_rich Low_complexity Low_complexity 1 25 0 3 1551 279 227 61 0 chr4 126622922 126622988 -29007132 + ID_B1 SINE B4 57 126 -98 3 1551 1194 75 0 7 chr4 126623419 126623566 -29006554 + B1_Mus2 SINE Alu 2 147 0 3 1551 707 181 207 17 chr4 126623585 126623759 -29006361 + B3 SINE B2 5 211 -5 3 1551 441 296 84 56 chr4 126623788 126623967 -29006153 + B3A SINE B2 11 194 -4 3 1551 600 243 32 65 chr4 126623989 126624143 -29005977 + B1_Mur1 SINE Alu 1 149 0 3 1551 222 286 13 114 chr4 126624267 126624346 -29005774 + ID SINE ID 5 75 -149 3 1551 186 43 0 0 chr4 126624348 126624371 -29005749 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 3 1551 1092 50 0 0 chr4 126624482 126624621 -29005499 + B1_Mm SINE Alu 9 147 0 3 1551 1008 121 0 26 chr4 126624709 126624862 -29005258 + B1_Mur4 SINE Alu 1 149 -1 3 1551 406 336 98 38 chr4 126624892 126625158 -29004962 + L1MC4a LINE L1 5578 5859 -2023 3 1551 22 0 0 0 chr4 126625295 126625317 -29004803 + AT_rich Low_complexity Low_complexity 1 22 0 3 1551 225 317 60 24 chr4 126625943 126626027 -29004093 - B1F SINE Alu -61 88 2 3 1551 22 0 0 0 chr4 126626268 126626290 -29003830 + AT_rich Low_complexity Low_complexity 1 22 0 3 1551 35 54 0 0 chr4 126626801 126626857 -29003263 + AT_rich Low_complexity Low_complexity 1 56 0 3 1551 336 316 0 2 chr4 126626875 126626974 -29003146 + ID4 SINE ID 7 104 -48 3 1551 517 208 0 28 chr4 126627026 126627135 -29002985 - B1_Mur4 SINE Alu 0 150 45 3 1551 385 237 44 19 chr4 126627273 126627392 -29002728 - PB1D7 SINE Alu 0 120 1 3 1551 239 204 0 0 chr4 126627461 126627510 -29002610 - ID_B1 SINE B4 0 224 176 3 1551 333 292 193 39 chr4 126627552 126627858 -29002262 + L1M5 LINE L1 2335 2687 -3459 3 1551 1210 42 0 7 chr4 126628020 126628159 -29001961 + B1_Mus2 SINE Alu 1 139 -8 3 1551 212 0 36 0 chr4 126628159 126628187 -29001933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1551 701 80 88 9 chr4 126628205 126628319 -29001801 + B2_Mm2 SINE B2 73 195 0 3 1551 674 281 42 37 chr4 126628531 126628709 -29001411 + B3 SINE B2 2 173 -43 3 1551 333 0 0 0 chr4 126628709 126628746 -29001374 + (CATA)n Simple_repeat Simple_repeat 3 39 0 3 1551 674 281 42 37 chr4 126628746 126628781 -29001339 + B3 SINE B2 174 215 -1 3 1551 487 267 120 27 chr4 126628806 126628956 -29001164 + RSINE1 SINE B4 2 165 0 3 1551 545 106 0 76 chr4 126628970 126629062 -29001058 + B1_Mus2 SINE Alu 62 146 -1 3 1551 330 87 0 0 chr4 126629064 126629110 -29001010 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3 1551 243 290 44 148 chr4 126629582 126629764 -29000356 + LTR41 LTR ERVL 488 650 -118 3 1551 286 276 286 0 chr4 126629820 126629925 -29000195 - ID_B1 SINE B4 -10 214 80 3 1551 1219 70 0 0 chr4 126630265 126630408 -28999712 + B1_Mm SINE Alu 2 144 -3 3 1551 324 0 0 0 chr4 126630408 126630444 -28999676 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1551 256 322 42 42 chr4 126630483 126630603 -28999517 + MT2B2 LTR ERVL 138 257 -327 3 1551 466 219 73 0 chr4 126630523 126630619 -28999501 + B1_Mus1 SINE Alu 18 120 -28 3 1551 1427 149 22 5 chr4 126630921 126631143 -28998977 - URR1A DNA MER1_type 0 226 1 3 1551 220 333 0 0 chr4 126631164 126631236 -28998884 + B1F1 SINE Alu 72 143 -6 3 1551 1175 78 0 0 chr4 126631246 126631388 -28998732 + B1_Mus2 SINE Alu 1 142 -5 3 1551 41 0 0 0 chr4 126631388 126631429 -28998691 + AT_rich Low_complexity Low_complexity 1 41 0 3 1551 633 143 168 0 chr4 126631446 126631551 -28998569 + B1_Mur4 SINE Alu 1 118 -32 3 1551 240 35 0 0 chr4 126631551 126631580 -28998540 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1551 633 143 168 0 chr4 126631580 126631593 -28998527 + B1_Mur4 SINE Alu 119 138 -12 3 1551 323 23 23 0 chr4 126631593 126631637 -28998483 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1551 1353 92 22 0 chr4 126631677 126631861 -28998259 + B2_Mm1t SINE B2 4 191 -2 3 1551 305 319 27 34 chr4 126631910 126632059 -28998061 + ERVL-E-int LTR ERVL 1051 1198 -4469 3 1551 427 259 39 95 chr4 126632371 126632550 -28997570 + RMER15 LTR ERVL 329 497 -78 3 1551 628 256 40 163 chr4 126632620 126632872 -28997248 + B4 SINE B4 7 227 -65 3 1551 212 54 0 51 chr4 126632890 126632929 -28997191 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1551 1350 34 0 0 chr4 126632933 126633081 -28997039 + B1_Mus1 SINE Alu 1 148 0 3 1551 826 191 0 7 chr4 126633324 126633472 -28996648 + B1_Mus1 SINE Alu 2 148 0 3 1551 960 229 28 9 chr4 126633517 126633729 -28996391 - B3 SINE B2 0 216 1 3 1551 383 144 10 0 chr4 126634029 126634126 -28995994 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1551 381 22 0 0 chr4 126634185 126634231 -28995889 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1551 272 282 12 0 chr4 126634287 126634372 -28995748 + L1MB4 LINE L1 5152 5237 -909 3 1551 225 329 81 23 chr4 126634380 126634399 -28995721 + B4 SINE B4 57 80 -212 3 1551 429 279 54 44 chr4 126634399 126634534 -28995586 + B1F1 SINE Alu 4 143 -6 3 1551 273 254 50 45 chr4 126634541 126634708 -28995412 + L1MB4 LINE L1 5257 5422 -749 3 1551 1217 256 38 23 chr4 126634706 126635094 -28995026 + RMER1A Other Other 25 517 -549 3 1551 2241 204 121 61 chr4 126635088 126635900 -28994220 + RMER1B Other Other 56 1050 -16 3 1551 286 299 22 33 chr4 126636067 126636157 -28993963 + RSINE1 SINE B4 67 155 -10 3 1551 270 0 0 0 chr4 126636185 126636215 -28993905 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1551 185 0 0 39 chr4 126636215 126636240 -28993880 + (TAAAG)n Simple_repeat Simple_repeat 3 27 0 3 1551 631 274 0 25 chr4 126636256 126636417 -28993703 + RSINE1 SINE B4 3 159 -6 3 1551 478 260 97 8 chr4 126636443 126636567 -28993553 + B3A SINE B2 48 182 -16 3 1551 541 247 83 19 chr4 126636572 126636697 -28993423 - MTC LTR MaLR -8 413 279 3 1551 884 79 16 0 chr4 126636697 126636823 -28993297 + ORR1B1 LTR MaLR 1 128 -266 3 1551 3771 152 139 94 chr4 126636827 126637682 -28992438 - RMER19B LTR ERVK -8 894 1 3 1551 1631 153 26 0 chr4 126637682 126637949 -28992171 + ORR1B1 LTR MaLR 121 394 0 3 1551 1160 226 11 32 chr4 126637954 126638237 -28991883 + RLTR14 LTR ERV1 3 279 -103 3 1551 1490 184 33 7 chr4 126638246 126638520 -28991600 - MTC LTR MaLR -140 281 1 3 1551 666 297 148 25 chr4 126638548 126639143 -28990977 + L1MB4 LINE L1 5374 6041 -139 3 1551 721 224 7 14 chr4 126639216 126639361 -28990759 + B1_Mus2 SINE Alu 2 145 -2 3 1551 1467 89 10 5 chr4 126639406 126639599 -28990521 + B2_Mm2 SINE B2 2 195 0 3 1551 1390 83 44 0 chr4 126639604 126639784 -28990336 + B2_Mm2 SINE B2 1 188 -7 3 1551 201 94 0 0 chr4 126639938 126639970 -28990150 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1551 329 279 8 75 chr4 126639974 126640094 -28990026 + PB1D7 SINE Alu 1 112 -8 3 1551 27 0 0 0 chr4 126640107 126640134 -28989986 + AT_rich Low_complexity Low_complexity 1 27 0 3 1551 346 146 170 0 chr4 126640269 126640377 -28989743 - B2_Mm2 SINE B2 -3 192 47 3 1551 1388 91 11 0 chr4 126640461 126640637 -28989483 - B2_Mm1t SINE B2 -14 179 2 3 1551 652 256 84 39 chr4 126640643 126640846 -28989274 - B3 SINE B2 0 216 5 3 1551 797 221 65 20 chr4 126640855 126641054 -28989066 - B3 SINE B2 -6 210 3 3 1551 1725 26 5 0 chr4 126641393 126641582 -28988538 + B2_Mm1t SINE B2 2 191 -2 3 1551 211 128 0 60 chr4 126641953 126641964 -28988156 + (CAAA)n Simple_repeat Simple_repeat 2 12 0 3 1551 1269 48 0 14 chr4 126641964 126642112 -28988008 + B1_Mus2 SINE Alu 1 146 -1 3 1551 211 128 0 60 chr4 126642112 126642150 -28987970 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1551 661 198 11 50 chr4 126642360 126642421 -28987699 + ID_B1 SINE B4 80 138 -154 3 1551 1418 95 11 5 chr4 126642421 126642611 -28987509 + B2_Mm1t SINE B2 1 191 -2 3 1551 661 174 14 55 chr4 126642611 126642706 -28987414 + ID_B1 SINE B4 135 224 0 3 1551 1257 74 0 0 chr4 126642747 126642895 -28987225 + B1_Mus1 SINE Alu 1 148 0 3 1551 1716 42 0 0 chr4 126643335 126643527 -28986593 + B2_Mm1a SINE B2 1 192 -1 3 1551 238 262 17 81 chr4 126643536 126643710 -28986410 + L1ME2z LINE L1 6280 6442 -2 3 1551 285 261 21 32 chr4 126643741 126643836 -28986284 + BC1_Mm scRNA scRNA 3 96 -56 3 1551 209 225 0 0 chr4 126643990 126644030 -28986090 + MIRb SINE MIR 208 247 -21 3 1551 263 28 28 0 chr4 126644981 126645017 -28985103 + (CCCG)n Simple_repeat Simple_repeat 4 40 0 3 1551 28 61 0 0 chr4 126645116 126645165 -28984955 + GC_rich Low_complexity Low_complexity 1 49 0 3 1551 186 309 0 18 chr4 126645946 126646002 -28984118 - L3b LINE CR1 -7 475 421 3 1551 183 204 0 0 chr4 126646439 126646493 -28983627 + (GGTTG)n Simple_repeat Simple_repeat 5 58 0 3 1551 298 282 82 0 chr4 126646493 126646578 -28983542 - PB1D10 SINE Alu -9 108 17 4 1551 1439 60 27 16 chr4 126647124 126647309 -28982811 + B2_Mm2 SINE B2 1 187 -8 4 1551 229 257 122 0 chr4 126647472 126647546 -28982574 - ID4_ SINE ID 0 83 1 4 1551 231 314 80 35 chr4 126647547 126647677 -28982443 - MIR SINE MIR -118 150 11 4 1551 294 29 0 0 chr4 126648014 126648049 -28982071 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 4 1551 780 124 58 0 chr4 126648051 126648172 -28981948 - B1_Mur3 SINE Alu -4 145 18 4 1551 3361 96 36 36 chr4 126648172 126648647 -28981473 - MT2C_Mm LTR ERVL 0 475 1 4 1551 283 0 0 0 chr4 126648647 126648680 -28981440 - MERVL-int LTR ERVL 0 5485 5453 4 1551 286 186 14 41 chr4 126648680 126648753 -28981367 - ORR1A3-int LTR MaLR -1326 637 567 4 1551 3504 113 103 23 chr4 126648753 126648882 -28981238 - MERVL_2A-int LTR ERVL -132 5629 5443 4 1551 1402 83 0 35 chr4 126648882 126649081 -28981039 - B2_Mm2 SINE B2 -3 192 1 4 1551 3504 113 103 23 chr4 126649081 126649523 -28980597 - MERVL_2A-int LTR ERVL -319 5442 5012 4 1551 1583 103 0 0 chr4 126649520 126649723 -28980397 - MERVL_2A-int LTR ERVL -3270 2491 2289 4 1551 2463 92 31 0 chr4 126649724 126650041 -28980079 + ORR1A2 LTR MaLR 1 327 0 4 1551 303 49 0 0 chr4 126650090 126650131 -28979989 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1551 406 284 52 52 chr4 126650157 126650291 -28979829 - RSINE1 SINE B4 -30 135 2 4 1551 404 125 0 0 chr4 126650291 126650338 -28979782 - B1_Mus1 SINE Alu -100 48 2 4 1551 27 0 0 0 chr4 126650519 126650546 -28979574 + AT_rich Low_complexity Low_complexity 1 27 0 4 1551 216 0 0 0 chr4 126650972 126650996 -28979124 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1551 235 328 94 57 chr4 126651429 126651610 -28978510 - L2a LINE L2 -166 3221 3034 4 1551 550 184 34 26 chr4 126651620 126651737 -28978383 + B1_Mur2 SINE Alu 26 143 -6 4 1551 457 277 22 44 chr4 126651883 126652019 -28978101 - ID_B1 SINE B4 0 224 92 4 1551 344 32 15 46 chr4 126652387 126652452 -28977668 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 4 1551 978 66 109 0 chr4 126652454 126652591 -28977529 - B2_Mm2 SINE B2 -43 152 1 4 1551 1236 48 7 7 chr4 126652650 126652796 -28977324 + B1_Mus2 SINE Alu 1 146 -1 4 1551 332 337 60 22 chr4 126652811 126652993 -28977127 - L2a LINE L2 -906 2513 2325 4 1551 407 211 211 0 chr4 126653139 126653234 -28976886 + RSINE1 SINE B4 3 117 -48 4 1551 477 194 184 0 chr4 126653343 126653446 -28976674 + B1_Mus2 SINE Alu 10 131 -16 4 1551 607 181 0 28 chr4 126653447 126653555 -28976565 + MT2B LTR ERVL 2 106 -427 4 1551 536 241 100 24 chr4 126653576 126653746 -28976374 - RLTR41 LTR ERV1 0 446 264 4 1551 874 238 24 60 chr4 126654028 126654278 -28975842 + MT2B LTR ERVL 284 524 -77 4 1551 230 236 143 18 chr4 126654269 126654325 -28975795 + B1_Mus2 SINE Alu 52 114 -33 4 1551 1269 34 0 26 chr4 126654409 126654560 -28975560 + B1_Mus2 SINE Alu 1 147 0 4 1551 243 0 0 0 chr4 126654560 126654587 -28975533 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1551 718 221 93 69 chr4 126654795 126654999 -28975121 + B3 SINE B2 2 210 -6 4 1551 24 0 0 0 chr4 126655021 126655045 -28975075 + AT_rich Low_complexity Low_complexity 1 24 0 4 1551 1177 96 0 0 chr4 126655045 126655191 -28974929 - B1_Mus1 SINE Alu 0 148 3 4 1551 401 238 5 8 chr4 126655193 126655297 -28974823 + B1_Mus2 SINE Alu 13 115 -2 4 1551 378 104 238 55 chr4 126655539 126655641 -28974479 - B1F2 SINE Alu 0 149 42 4 1551 224 0 0 157 chr4 126655644 126655752 -28974368 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 4 1551 244 290 0 0 chr4 126655754 126655766 -28974354 - ID_B1 SINE B4 -77 147 86 4 1551 292 180 0 0 chr4 126655766 126655816 -28974304 - B1_Mus2 SINE Alu -93 54 5 4 1551 900 235 66 5 chr4 126655836 126656033 -28974087 + B3 SINE B2 2 210 -6 4 1551 1287 114 0 6 chr4 126656041 126656217 -28973903 + B2_Mm2 SINE B2 3 177 -18 4 1551 288 0 0 0 chr4 126656435 126656467 -28973653 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1551 811 228 0 20 chr4 126656507 126656655 -28973465 - RSINE1 SINE B4 -19 146 2 4 1551 920 141 48 27 chr4 126656781 126656927 -28973193 - B1_Mur4 SINE Alu -1 149 1 4 1551 814 193 78 151 chr4 126656953 126657102 -28973018 + B3 SINE B2 2 134 -82 4 1551 1347 20 0 0 chr4 126657102 126657248 -28972872 - B1_Mus2 SINE Alu 0 147 2 4 1551 814 193 78 151 chr4 126657248 126657330 -28972790 + B3 SINE B2 135 216 0 4 1551 1207 75 0 20 chr4 126657350 126657500 -28972620 + B1_Mus1 SINE Alu 2 148 0 4 1551 305 302 61 81 chr4 126657608 126657954 -28972166 + L1M2 LINE L1 4051 4389 -1754 4 1551 677 265 7 0 chr4 126657960 126658096 -28972024 + ID_B1 SINE B4 78 214 -10 4 1551 776 241 89 0 chr4 126658120 126658311 -28971809 + B3 SINE B2 3 210 -6 4 1551 1253 55 0 14 chr4 126658488 126658635 -28971485 - B1_Mm SINE Alu 0 147 3 4 1551 472 264 28 0 chr4 126658647 126658753 -28971367 - PB1D10 SINE Alu -8 109 1 4 1551 361 286 61 28 chr4 126658767 126658935 -28971185 + L1M4 LINE L1 4854 5030 -1116 4 1551 542 235 264 6 chr4 126658935 126659102 -28971018 + B3 SINE B2 1 210 -6 4 1551 361 286 61 28 chr4 126659102 126659113 -28971007 + L1M4 LINE L1 5031 5039 -1107 4 1551 1012 252 5 19 chr4 126659134 126659348 -28970772 + B3 SINE B2 2 212 -4 4 1551 462 274 71 36 chr4 126659463 126659603 -28970517 + B3 SINE B2 1 145 -71 4 1551 544 149 32 0 chr4 126659804 126659898 -28970222 + B1_Mur2 SINE Alu 8 104 -45 4 1551 312 273 0 25 chr4 126659903 126659982 -28970138 + PB1D10 SINE Alu 41 117 0 4 1551 799 181 27 14 chr4 126660088 126660234 -28969886 + B1_Mur4 SINE Alu 1 148 -2 4 1551 456 229 14 7 chr4 126660243 126660384 -28969736 + GA-rich Low_complexity Low_complexity 4 145 0 4 1551 222 37 0 0 chr4 126660608 126660635 -28969485 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 4 1551 243 0 0 0 chr4 126660915 126660942 -28969178 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1551 24 32 0 0 chr4 126660942 126660973 -28969147 + AT_rich Low_complexity Low_complexity 1 31 0 4 1551 212 261 0 0 chr4 126661017 126661063 -28969057 + PB1D10 SINE Alu 43 88 -29 4 1551 977 119 7 0 chr4 126661104 126661247 -28968873 + B2_Mm2 SINE B2 2 145 -50 4 1551 1666 37 10 5 chr4 126661286 126661478 -28968642 + B2_Mm1t SINE B2 1 193 0 4 1551 1288 41 0 0 chr4 126661612 126661758 -28968362 + B1_Mm SINE Alu 2 147 0 4 1551 1599 48 27 0 chr4 126662303 126662490 -28967630 + B2_Mm1a SINE B2 2 193 0 4 1551 497 53 286 103 chr4 126662549 126662648 -28967472 + B2_Mm2 SINE B2 47 180 -15 4 1551 4841 32 32 7 chr4 126662648 126663209 -28966911 - L1Md_F3 LINE L1 0 6584 6010 4 1551 497 53 286 103 chr4 126663209 126663235 -28966885 + B2_Mm2 SINE B2 181 195 0 4 1551 459 211 65 1 chr4 126663253 126663356 -28966764 + B1_Mur2 SINE Alu 1 108 -12 4 1551 868 124 26 106 chr4 126663427 126663616 -28966504 + B2_Mm2 SINE B2 1 174 -21 4 1551 1252 74 0 13 chr4 126663653 126663803 -28966317 + B1_Mus1 SINE Alu 1 148 0 4 1551 21 0 0 0 chr4 126663803 126663824 -28966296 + AT_rich Low_complexity Low_complexity 1 21 0 4 1551 832 179 14 14 chr4 126663870 126664017 -28966103 - B1_Mur2 SINE Alu -2 147 1 4 1551 233 214 40 160 chr4 126664085 126664139 -28965981 - B1F SINE Alu -51 98 43 4 1551 711 170 188 6 chr4 126664139 126664299 -28965821 - B2_Mm2 SINE B2 -4 191 3 4 1551 233 214 40 160 chr4 126664299 126664344 -28965776 - B1F SINE Alu -107 42 11 4 1551 306 0 0 0 chr4 126664423 126664457 -28965663 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4 1551 1435 101 16 0 chr4 126664550 126664738 -28965382 - B2_Mm2 SINE B2 -4 191 1 4 1551 286 280 67 138 chr4 126664771 126664798 -28965322 - CYRA11_Mm Unknown Y-chromosome -206 411 292 4 1551 1154 139 49 75 chr4 126664798 126664908 -28965212 + URR1A DNA MER1_type 1 106 -120 4 1551 213 39 0 0 chr4 126664908 126664934 -28965186 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1551 907 80 112 0 chr4 126664934 126665059 -28965061 - B1_Mus1 SINE Alu -9 139 1 4 1551 286 280 67 138 chr4 126665059 126665173 -28964947 - CYRA11_Mm Unknown Y-chromosome -326 291 178 4 1551 264 235 15 0 chr4 126665180 126665248 -28964872 - RLTR19-int LTR ERVK -4397 1740 1672 4 1551 825 152 55 156 chr4 126665297 126665336 -28964784 + B3 SINE B2 1 33 -183 4 1551 1331 79 84 6 chr4 126665336 126665496 -28964624 + B2_Mm1a SINE B2 1 160 -33 4 1551 315 0 0 0 chr4 126665496 126665531 -28964589 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 1551 1331 79 84 6 chr4 126665531 126665549 -28964571 + B2_Mm1a SINE B2 161 191 -2 4 1551 1280 35 7 0 chr4 126665554 126665699 -28964421 + B1_Mm SINE Alu 2 147 0 4 1551 825 152 55 156 chr4 126665699 126665871 -28964249 + B3 SINE B2 34 196 -20 4 1551 1647 42 5 5 chr4 126666300 126666490 -28963630 + B2_Mm1a SINE B2 1 190 -3 4 1551 294 29 0 0 chr4 126666586 126666621 -28963499 + (CTA)n Simple_repeat Simple_repeat 1 35 0 4 1551 784 176 58 22 chr4 126666668 126666807 -28963313 - B1_Mur4 SINE Alu -6 144 1 4 1551 483 207 42 25 chr4 126666816 126666935 -28963185 - B2_Mm2 SINE B2 -9 186 66 4 1551 283 231 15 0 chr4 126667022 126667087 -28963033 - RLTR19-int LTR ERVK -4588 1549 1484 4 1551 837 70 0 0 chr4 126667469 126667583 -28962537 + B1_Mm SINE Alu 2 115 -32 4 1551 257 159 0 0 chr4 126667568 126667612 -28962508 - B3 SINE B2 -172 44 1 4 1551 466 196 130 9 chr4 126667739 126667847 -28962273 + B1_Mur1 SINE Alu 24 144 -5 4 1551 351 150 8 44 chr4 126668227 126668318 -28961802 + RLTR19-int LTR ERVK 896 966 -5171 4 1551 1469 83 5 0 chr4 126668320 126668512 -28961608 + B2_Mm2 SINE B2 1 193 -2 4 1551 1099 38 45 0 chr4 126668523 126668655 -28961465 + B1_Mm SINE Alu 2 139 -8 4 1551 224 30 0 29 chr4 126668655 126668689 -28961431 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1551 768 84 0 0 chr4 126668697 126668804 -28961316 + B1_Mus1 SINE Alu 29 135 -13 4 1551 1276 112 21 11 chr4 126668836 126669025 -28961095 + B2_Mm2 SINE B2 1 191 -4 4 1551 297 174 0 0 chr4 126669208 126669254 -28960866 + RLTR19-int LTR ERVK 1748 1793 -3729 4 1551 293 257 51 103 chr4 126669326 126669482 -28960638 - RLTR14 LTR ERV1 0 382 235 4 1551 923 158 58 42 chr4 126669679 126669870 -28960250 + B2_Mm2 SINE B2 1 194 -1 5 1551 376 273 90 102 chr4 126669926 126670093 -28960027 - RLTR14-int LTR ERV1 -53 5264 5100 4 1551 1309 103 16 0 chr4 126670235 126670419 -28959701 - B2_Mm2 SINE B2 -7 188 2 5 1551 1151 89 0 0 chr4 126670445 126670591 -28959529 - B1_Mus1 SINE Alu -1 147 2 5 1551 320 262 37 0 chr4 126670773 126670880 -28959240 - RLTR14-int LTR ERV1 -1435 3882 3772 4 1551 291 75 0 0 chr4 126671025 126671065 -28959055 - B1_Mus1 SINE Alu -108 40 1 5 1551 771 330 43 31 chr4 126671091 126671513 -28958607 - RLTR14-int LTR ERV1 -1971 3346 2920 4 1551 435 319 99 79 chr4 126671766 126672283 -28957837 - MuLV-int LTR ERV1 -3252 4354 3828 5 1551 304 291 35 0 chr4 126672371 126672457 -28957663 + CT-rich Low_complexity Low_complexity 5 93 0 5 1551 232 329 14 0 chr4 126672457 126672527 -28957593 - tRNA-Ala-GCA tRNA tRNA -3 72 2 5 1551 207 0 0 0 chr4 126672538 126672561 -28957559 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 5 1551 844 132 27 34 chr4 126672599 126672748 -28957372 - B1_Mur3 SINE Alu 0 149 2 5 1551 342 0 0 0 chr4 126672760 126672798 -28957322 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1551 984 101 81 0 chr4 126672798 126672947 -28957173 - B2_Mm2 SINE B2 -34 161 1 5 1551 412 253 65 20 chr4 126672958 126673111 -28957009 - Charlie1a DNA MER1_type -492 963 804 5 1551 242 273 0 0 chr4 126673115 126673181 -28956939 + ID4 SINE ID 2 67 -16 5 1551 1347 226 31 50 chr4 126673192 126673550 -28956570 + ORR1D2 LTR MaLR 19 369 -1 5 1551 1148 36 0 0 chr4 126673550 126673687 -28956433 + B1_Mus2 SINE Alu 1 137 -10 5 1551 257 0 30 0 chr4 126673687 126673720 -28956400 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1551 540 296 57 23 chr4 126673837 126674013 -28956107 + B4 SINE B4 1 182 -110 5 1551 398 232 165 16 chr4 126674013 126674140 -28955980 + B1_Mus2 SINE Alu 2 147 0 5 1551 1013 70 19 19 chr4 126674145 126674304 -28955816 + B2_Mm2 SINE B2 36 194 -1 5 1551 622 260 0 105 chr4 126674389 126674608 -28955512 + B3A SINE B2 2 197 -1 5 1551 1416 65 32 0 chr4 126674612 126674798 -28955322 + B2_Mm1a SINE B2 2 193 0 5 1551 21 0 0 0 chr4 126674798 126674819 -28955301 + AT_rich Low_complexity Low_complexity 1 21 0 5 1551 433 345 0 33 chr4 126674819 126674972 -28955148 + B1F SINE Alu 1 148 -1 5 1551 1302 92 17 0 chr4 126674975 126675148 -28954972 + B2_Mm2 SINE B2 1 176 -19 5 1551 551 85 12 0 chr4 126675149 126675231 -28954889 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 5 1551 1062 223 75 32 chr4 126675728 126676010 -28954110 + RMER1C Other Other 746 1039 -303 5 1551 236 178 41 0 chr4 126676010 126676083 -28954037 + (TTTG)n Simple_repeat Simple_repeat 4 79 0 5 1551 1241 47 0 0 chr4 126676083 126676231 -28953889 - B1_Mus1 SINE Alu 0 148 1 5 1551 431 70 0 5 chr4 126676286 126676351 -28953769 - B2_Mm2 SINE B2 -107 109 47 5 1551 1226 59 24 0 chr4 126676364 126676534 -28953586 - B2_Mm2 SINE B2 -14 181 8 5 1551 423 0 0 0 chr4 126676535 126676582 -28953538 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1551 2124 71 27 10 chr4 126676583 126676882 -28953238 - RLTR27 LTR ERVK -4 305 2 5 1551 468 0 0 0 chr4 126676882 126676934 -28953186 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1551 1027 95 0 0 chr4 126676934 126677081 -28953039 - B2_Mm2 SINE B2 -46 149 3 5 1551 1202 41 7 7 chr4 126677107 126677254 -28952866 + B1_Mus1 SINE Alu 2 148 0 5 1551 234 0 0 0 chr4 126677416 126677442 -28952678 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 5 1551 842 232 14 28 chr4 126677480 126677693 -28952427 + MTC LTR MaLR 204 413 -8 5 1551 369 62 0 0 chr4 126677776 126677824 -28952296 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5 1551 372 317 28 21 chr4 126678032 126678174 -28951946 + Arthur1C DNA Tip100 3 145 -218 5 1551 204 204 0 0 chr4 126678235 126678279 -28951841 + GA-rich Low_complexity Low_complexity 3 46 0 5 1551 466 209 15 135 chr4 126678321 126678439 -28951681 + B1F SINE Alu 1 105 -12 5 1551 976 82 104 0 chr4 126678439 126678573 -28951547 + B1_Mus1 SINE Alu 1 148 0 5 1551 413 209 15 135 chr4 126678573 126678587 -28951533 + PB1D10 SINE Alu 106 117 0 5 1551 1125 86 40 0 chr4 126678626 126678800 -28951320 + B2_Mm2 SINE B2 14 194 -1 5 1551 1642 31 5 0 chr4 126678800 126678991 -28951129 + B2_Mm1t SINE B2 2 193 0 5 1551 22 35 0 0 chr4 126679185 126679214 -28950906 + AT_rich Low_complexity Low_complexity 1 29 0 5 1551 520 291 74 0 chr4 126679380 126679528 -28950592 + B3 SINE B2 9 167 -49 5 1551 2997 84 5 9 chr4 126679543 126679978 -28950142 - RLTR1D LTR ERV1 -16 589 157 5 1551 186 133 0 0 chr4 126680064 126680094 -28950026 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1551 770 282 0 11 chr4 126680222 126680405 -28949715 + B3A SINE B2 2 182 -16 5 1551 256 170 64 0 chr4 126680497 126680544 -28949576 + ID_B1 SINE B4 121 170 -54 5 1551 228 250 58 0 chr4 126680498 126680550 -28949570 + 4.5SRNA scRNA scRNA 39 93 -1 5 1551 23 0 0 0 chr4 126680550 126680573 -28949547 + AT_rich Low_complexity Low_complexity 1 23 0 5 1551 301 278 100 0 chr4 126680607 126680697 -28949423 + B1F SINE Alu 6 104 -45 5 1551 1625 26 21 0 chr4 126680718 126680907 -28949213 + B2_Mm1a SINE B2 1 193 0 5 1551 357 279 0 55 chr4 126680907 126680998 -28949122 + B3 SINE B2 28 113 -103 5 1551 327 164 0 0 chr4 126681050 126681111 -28949009 + (TATG)n Simple_repeat Simple_repeat 2 62 0 5 1551 1270 90 25 36 chr4 126681310 126681506 -28948614 - B2_Mm2 SINE B2 0 195 2 5 1551 189 0 0 0 chr4 126681510 126681531 -28948589 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1551 2697 120 9 72 chr4 126681653 126682112 -28948008 + RLTR23 LTR ERV1 1 430 0 5 1551 363 123 37 3 chr4 126682121 126682196 -28947924 + RMER17C LTR ERVK 1 58 -352 5 1551 215 306 70 12 chr4 126683349 126683435 -28946685 + B1F SINE Alu 52 142 -7 5 1551 239 282 25 13 chr4 126683363 126683442 -28946678 + ID_B1 SINE B4 145 224 0 5 1551 285 328 83 17 chr4 126683530 126683710 -28946410 + B3A SINE B2 3 194 -4 5 1551 1068 119 30 0 chr4 126683742 126683910 -28946210 - B2_Mm2 SINE B2 -22 173 1 5 1551 386 139 14 0 chr4 126683952 126684024 -28946096 + CT-rich Low_complexity Low_complexity 2 74 0 5 1551 338 174 0 85 chr4 126684028 126684043 -28946077 - B1_Mur4 SINE Alu 0 150 139 5 1551 1029 85 43 0 chr4 126684043 126684184 -28945936 - B1_Mus1 SINE Alu -1 147 1 5 1551 338 174 0 85 chr4 126684184 126684262 -28945858 - B1_Mur4 SINE Alu -12 138 65 5 1551 585 266 0 0 chr4 126684519 126684647 -28945473 + ID_B1 SINE B4 95 222 -2 5 1551 367 257 88 35 chr4 126684656 126684769 -28945351 + PB1D9 SINE Alu 1 119 -1 5 1551 315 0 0 0 chr4 126684804 126684839 -28945281 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5 1551 24 0 0 0 chr4 126684854 126684878 -28945242 + AT_rich Low_complexity Low_complexity 1 24 0 5 1551 319 289 39 129 chr4 126684894 126685049 -28945071 + RSINE1 SINE B4 25 165 0 5 1551 197 33 0 32 chr4 126685062 126685093 -28945027 + (TAA)n Simple_repeat Simple_repeat 3 32 0 5 1551 843 139 0 14 chr4 126685097 126685236 -28944884 - B1_Mus2 SINE Alu 0 147 11 5 1551 389 196 32 111 chr4 126685134 126685260 -28944860 - MT2B LTR ERVL -337 264 149 5 1551 2288 83 51 20 chr4 126685763 126686119 -28944001 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1551 56308 29 7 4 chr4 126686119 126692577 -28937543 + IAPEz-int LTR ERVK 8 6479 -2 5 1551 2288 83 51 20 chr4 126692579 126692935 -28937185 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1551 728 119 134 8 chr4 126693553 126693680 -28936440 - B1_Mur3 SINE Alu -6 143 1 5 1551 444 255 19 19 chr4 126693842 126693950 -28936170 + PB1D7 SINE Alu 13 120 0 5 1551 511 258 22 59 chr4 126693957 126694093 -28936027 + RSINE1 SINE B4 31 161 -4 5 1551 573 28 0 0 chr4 126694146 126694217 -28935903 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1551 1175 68 0 0 chr4 126694304 126694451 -28935669 + B1_Mm SINE Alu 1 147 0 5 1551 256 60 60 0 chr4 126694454 126694504 -28935616 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 5 1551 373 296 52 0 chr4 126695087 126695222 -28934898 - B1F SINE Alu -7 142 1 5 1551 212 77 26 0 chr4 126695222 126695261 -28934859 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 1551 663 163 32 0 chr4 126695263 126695386 -28934734 - B1_Mur4 SINE Alu 0 150 24 5 1551 440 317 52 47 chr4 126695386 126695453 -28934667 - ID_B1 SINE B4 0 222 32 5 1551 413 276 103 8 chr4 126695540 126695657 -28934463 - B1F1 SINE Alu -3 146 19 5 1551 27 0 0 0 chr4 126695833 126695860 -28934260 + AT_rich Low_complexity Low_complexity 1 27 0 5 1551 1449 51 17 0 chr4 126696204 126696382 -28933738 + B2_Mm2 SINE B2 2 182 -13 5 1551 270 0 0 0 chr4 126696387 126696417 -28933703 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1551 701 200 8 0 chr4 126696428 126696553 -28933567 + B1_Mur3 SINE Alu 1 126 -23 5 1551 377 289 65 29 chr4 126696553 126696565 -28933555 + ID_B1 SINE B4 82 223 -1 5 1551 364 309 20 48 chr4 126696698 126696844 -28933276 - RSINE1 SINE B4 -9 156 15 5 1551 659 186 20 33 chr4 126697055 126697205 -28932915 - B1_Mur1 SINE Alu -1 148 1 5 1551 766 152 0 21 chr4 126697264 126697405 -28932715 + B1_Mus1 SINE Alu 11 148 0 5 1551 279 79 0 0 chr4 126697651 126697689 -28932431 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1551 423 76 13 0 chr4 126697689 126697763 -28932357 - B1_Mm SINE Alu 0 147 43 5 1551 693 201 45 0 chr4 126697792 126697926 -28932194 - B1_Mus2 SINE Alu -5 142 3 5 1551 336 262 53 69 chr4 126697947 126698078 -28932042 - ID_B1 SINE B4 -2 222 94 5 1551 234 152 0 0 chr4 126698866 126698925 -28931195 + (CCG)n Simple_repeat Simple_repeat 3 61 0 5 1551 214 281 15 38 chr4 126699018 126699151 -28930969 + C-rich Low_complexity Low_complexity 5 134 0 6 1551 32 43 0 0 chr4 126699183 126699229 -28930891 + GC_rich Low_complexity Low_complexity 1 46 0 6 1551 23 0 0 0 chr4 126700838 126700861 -28929259 + AT_rich Low_complexity Low_complexity 1 23 0 6 1551 351 291 29 10 chr4 126701115 126701219 -28928901 - B1F SINE Alu -38 111 6 6 1551 285 226 31 108 chr4 126701296 126701425 -28928695 - PB1D9 SINE Alu 0 120 2 6 1551 440 170 260 0 chr4 126701634 126701734 -28928386 - B1_Mus1 SINE Alu -15 133 8 6 1551 257 100 0 48 chr4 126701895 126701937 -28928183 + PB1D9 SINE Alu 73 112 -8 6 1551 776 43 246 41 chr4 126702078 126702200 -28927920 - B1_Mus2 SINE Alu 0 147 1 6 1551 1276 108 5 16 chr4 126702202 126702390 -28927730 - B2_Mm2 SINE B2 -9 186 1 6 1551 564 219 154 5 chr4 126702396 126702584 -28927536 - B3 SINE B2 0 216 1 6 1551 482 100 12 0 chr4 126702830 126702910 -28927210 - B1_Mus1 SINE Alu -67 81 1 6 1551 288 205 0 133 chr4 126702837 126702927 -28927193 - MT2B2 LTR ERVL -355 229 152 6 1551 1163 54 0 20 chr4 126703748 126703898 -28926222 - B1_Mus2 SINE Alu 0 147 1 6 1551 260 293 97 39 chr4 126704314 126704417 -28925703 - PB1D9 SINE Alu 0 120 12 6 1551 255 103 0 0 chr4 126712879 126712918 -28917202 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1551 1414 78 10 25 chr4 126713172 126713368 -28916752 + B2_Mm1t SINE B2 1 193 0 6 1551 251 120 78 20 chr4 126713541 126713592 -28916528 + B3 SINE B2 5 58 -158 6 1551 22 35 0 0 chr4 126714230 126714259 -28915861 + AT_rich Low_complexity Low_complexity 1 29 0 6 1551 406 333 31 8 chr4 126714611 126714741 -28915379 + RSINE1 SINE B4 24 156 -9 6 1551 1110 122 135 54 chr4 126715203 126715256 -28914864 - ORR1A2 LTR MaLR -8 319 273 6 1551 1124 49 28 0 chr4 126715256 126715400 -28914720 - B1_Mus1 SINE Alu 0 148 1 6 1551 1110 122 135 54 chr4 126715400 126715606 -28914514 - ORR1A2 LTR MaLR -55 272 39 6 1551 258 204 0 0 chr4 126715936 126715985 -28914135 + PB1D9 SINE Alu 14 62 -58 6 1551 1261 59 82 6 chr4 126716146 126716317 -28913803 - MERVL-int LTR ERVL -677 4808 4625 6 1551 734 127 168 7 chr4 126716456 126716599 -28913521 - B2_Mm2 SINE B2 -26 169 4 6 1551 862 235 149 19 chr4 126716599 126716902 -28913218 - MTD LTR MaLR -9 410 68 6 1551 273 29 0 0 chr4 126716916 126716950 -28913170 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 6 1551 379 29 275 0 chr4 126716950 126717019 -28913101 - B1_Mus2 SINE Alu -12 135 48 6 1551 956 194 95 116 chr4 126717399 126717726 -28912394 - Lx5 LINE L1 -9 7041 6722 6 1551 578 163 41 0 chr4 126717812 126717910 -28912210 + B1_Mur2 SINE Alu 5 106 -43 6 1551 415 252 102 0 chr4 126717907 126718034 -28912086 - B3 SINE B2 -75 141 2 6 1551 1453 54 16 5 chr4 126718084 126718271 -28911849 - B2_Mm1a SINE B2 -4 189 1 6 1551 1109 83 155 0 chr4 126718459 126718627 -28911493 - B2_Mm2 SINE B2 0 195 2 6 1551 270 182 0 18 chr4 126718630 126718686 -28911434 - B1_Mm SINE Alu 0 147 93 6 1551 650 167 17 0 chr4 126718754 126718874 -28911246 + B3 SINE B2 2 123 -93 6 1551 287 182 143 0 chr4 126719000 126719077 -28911043 - B1_Mur4 SINE Alu 0 150 63 6 1551 466 177 176 8 chr4 126719218 126719343 -28910777 - B1_Mur1 SINE Alu -1 148 3 6 1551 644 264 93 0 chr4 126719410 126719603 -28910517 + B3 SINE B2 5 215 -1 6 1551 24 32 0 0 chr4 126719651 126719682 -28910438 + AT_rich Low_complexity Low_complexity 1 31 0 6 1551 371 66 17 24 chr4 126719682 126719759 -28910361 + B1_Mm SINE Alu 78 149 0 6 1551 911 102 8 0 chr4 126719824 126719952 -28910168 - B1_Mus1 SINE Alu -17 131 3 6 1551 1168 61 78 18 chr4 126720586 126720623 -28909497 - B2_Mm2 SINE B2 -19 176 134 6 1551 441 0 0 0 chr4 126720623 126720672 -28909448 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1551 1168 61 78 18 chr4 126720672 126720800 -28909320 - B2_Mm2 SINE B2 -62 133 1 6 1551 229 265 29 29 chr4 126720829 126720899 -28909221 - ID4 SINE ID -3 80 11 6 1551 664 106 8 31 chr4 126720942 126721069 -28909051 + L1_Mus4 LINE L1 6510 6633 -3 6 1551 1247 114 22 5 chr4 126721121 126721306 -28908814 + B2_Mm2 SINE B2 2 189 -6 6 1551 493 194 0 11 chr4 126721428 126721522 -28908598 + B1_Mur2 SINE Alu 2 94 -55 6 1551 338 182 30 0 chr4 126721792 126721858 -28908262 + PB1D9 SINE Alu 52 119 -1 6 1551 437 222 46 8 chr4 126722004 126722131 -28907989 - B1_Mur4 SINE Alu -13 137 11 6 1551 539 256 0 15 chr4 126722243 126722374 -28907746 - B3 SINE B2 -87 129 1 6 1551 247 114 0 0 chr4 126722573 126722608 -28907512 + B1_Mus2 SINE Alu 2 36 -111 6 1551 1009 174 39 10 chr4 126722656 126722859 -28907261 + ORR1B1 LTR MaLR 179 387 -7 6 1551 650 197 31 8 chr4 126723136 126723264 -28906856 - B1_Mur3 SINE Alu 0 149 19 6 1551 267 238 0 125 chr4 126723178 126723274 -28906846 - MT2B LTR ERVL -344 257 174 6 1551 276 282 28 0 chr4 126724594 126724665 -28905455 + L2b LINE L2 3296 3368 -7 6 1551 252 193 5 122 chr4 126724711 126724805 -28905315 + PB1D7 SINE Alu 42 119 -8 6 1551 1090 107 0 20 chr4 126727393 126727545 -28902575 + B1_Mur3 SINE Alu 1 149 0 6 1551 227 54 27 0 chr4 126727547 126727584 -28902536 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1551 1197 75 29 0 chr4 126727617 126727791 -28902329 + B2_Mm2 SINE B2 8 186 -9 6 1551 381 238 12 12 chr4 126728352 126728437 -28901683 - B4A SINE B4 -204 88 4 6 1551 1057 125 228 0 chr4 126729090 126729274 -28900846 - URR1A DNA MER1_type 0 226 1 6 1551 772 150 75 8 chr4 126729310 126729444 -28900676 + B1_Mur2 SINE Alu 1 143 -6 6 1551 439 257 18 35 chr4 126729860 126729973 -28900147 - RSINE1 SINE B4 -6 159 49 6 1551 601 235 125 5 chr4 126729977 126730161 -28899959 - B3 SINE B2 -10 206 1 6 1551 693 148 46 15 chr4 126730196 126730326 -28899794 + B1_Mus2 SINE Alu 6 139 -8 6 1551 303 234 339 18 chr4 126730385 126730494 -28899626 - B1_Mur1 SINE Alu -5 144 1 6 1551 470 34 0 0 chr4 126730784 126730843 -28899277 + L1_Mus2 LINE L1 6498 6556 -10 6 1551 216 0 0 0 chr4 126730843 126730867 -28899253 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6 1551 657 178 68 1 chr4 126730867 126730987 -28899133 - B1_Mus1 SINE Alu -13 137 10 6 1551 370 324 26 33 chr4 126731690 126731843 -28898277 - B4A SINE B4 -6 286 135 6 1551 634 200 24 0 chr4 126731937 126732062 -28898058 + B3 SINE B2 62 189 -27 6 1551 997 194 298 36 chr4 126732091 126732423 -28897697 - MTD LTR MaLR 0 419 1 6 1551 257 216 254 8 chr4 126732518 126732644 -28897476 + Charlie1a DNA MER1_type 458 614 -841 6 1551 430 126 27 2 chr4 126732665 126732758 -28897362 + B2_Mm2 SINE B2 1 100 -98 6 1551 391 248 8 40 chr4 126732786 126732912 -28897208 + Charlie1a DNA MER1_type 611 732 -723 6 1551 1156 68 7 0 chr4 126733089 126733236 -28896884 - B1_Mus1 SINE Alu 0 148 1 6 1551 937 150 14 0 chr4 126734069 126734216 -28895904 + B1_Mur3 SINE Alu 1 149 0 6 1551 1057 207 39 0 chr4 126734255 126734458 -28895662 + B3 SINE B2 1 211 -5 6 1551 201 39 0 0 chr4 126734547 126734573 -28895547 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1551 321 300 0 0 chr4 126734749 126734839 -28895281 + MIR3 SINE MIR 104 193 -15 6 1551 711 238 100 5 chr4 126734940 126735130 -28894990 + B3 SINE B2 2 209 -7 6 1551 240 158 0 0 chr4 126735143 126735161 -28894959 + A-rich Low_complexity Low_complexity 1 18 0 6 1551 1059 82 7 40 chr4 126735161 126735313 -28894807 + B1_Mus2 SINE Alu 1 147 0 6 1551 240 158 0 0 chr4 126735313 126735333 -28894787 + A-rich Low_complexity Low_complexity 19 38 0 6 1551 198 0 0 0 chr4 126735333 126735355 -28894765 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 6 1551 240 158 0 0 chr4 126735355 126735372 -28894748 + A-rich Low_complexity Low_complexity 39 55 0 6 1551 500 223 63 21 chr4 126735488 126735630 -28894490 + B1F2 SINE Alu 1 148 -1 6 1551 561 261 169 6 chr4 126736758 126736935 -28893185 + B3 SINE B2 2 207 -9 6 1551 303 297 0 0 chr4 126737027 126737101 -28893019 - RSINE1 SINE B4 -86 79 6 6 1551 507 257 18 0 chr4 126737168 126737281 -28892839 - RSINE1 SINE B4 -48 117 3 6 1551 279 0 0 0 chr4 126737430 126737461 -28892659 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1551 1322 83 55 0 chr4 126737529 126737710 -28892410 + B2_Mm1a SINE B2 1 191 -2 6 1551 212 246 53 0 chr4 126737786 126737843 -28892277 - B1_Mur4 SINE Alu -85 65 6 6 1551 565 206 66 0 chr4 126737919 126738055 -28892065 - B1_Mur1 SINE Alu 0 149 5 6 1551 748 191 0 7 chr4 126738574 126738716 -28891404 - B1_Mur2 SINE Alu 0 149 9 6 1551 439 358 0 12 chr4 126738848 126739009 -28891111 + RSINE1 SINE B4 7 165 0 6 1551 1163 62 14 0 chr4 126739190 126739335 -28890785 - B1_Mm SINE Alu 0 147 1 6 1551 745 117 8 8 chr4 126739407 126739536 -28890584 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 6 1551 612 128 73 0 chr4 126739544 126739653 -28890467 - B1_Mus1 SINE Alu 0 148 32 6 1551 540 45 0 0 chr4 126739662 126739729 -28890391 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 6 1551 426 195 57 11 chr4 126739729 126739817 -28890303 - PB1D9 SINE Alu -11 109 18 6 1551 203 146 24 0 chr4 126739864 126739905 -28890215 + CT-rich Low_complexity Low_complexity 2 43 0 6 1551 1111 75 7 0 chr4 126739906 126740053 -28890067 - B1_Mus1 SINE Alu 0 148 1 7 1551 886 139 0 0 chr4 126740079 126740223 -28889897 + RMER15 LTR ERVL 432 575 0 7 1551 573 266 96 16 chr4 126740232 126740419 -28889701 - Lx8 LINE L1 -703 6770 6569 7 1551 1619 231 46 103 chr4 126740419 126740891 -28889229 - RMER16 LTR ERVK 0 533 93 7 1551 4396 34 2 2 chr4 126740891 126741394 -28888726 - RLTR1C LTR ERV1 0 503 1 7 1551 1619 231 46 103 chr4 126741394 126741486 -28888634 - RMER16 LTR ERVK -441 92 2 7 1551 317 172 0 0 chr4 126741643 126741701 -28888419 + L1MC LINE L1 5695 5752 -592 7 1551 6939 50 5 0 chr4 126741699 126742541 -28887579 - L1Md_F2 LINE L1 -1 6581 5736 7 1551 845 241 6 0 chr4 126742545 126742719 -28887401 - RMER15-int LTR ERVL -662 4337 4163 7 1551 512 219 19 0 chr4 126742750 126742855 -28887265 + RLTR18B LTR ERVK 3 109 -403 7 1551 543 274 35 12 chr4 126742982 126743152 -28886968 + RLTR18B LTR ERVK 123 296 -216 7 1551 521 225 47 47 chr4 126743162 126743311 -28886809 - MTD LTR MaLR -161 258 110 7 1551 1179 91 57 6 chr4 126743312 126743489 -28886631 + B2_Mm1t SINE B2 1 186 -7 7 1551 4253 84 0 2 chr4 126743489 126744064 -28886056 - L1_Mus2 LINE L1 -439 5444 4871 7 1551 8020 50 8 16 chr4 126744059 126745193 -28884927 + L1_Mus2 LINE L1 5448 6566 0 7 1551 363 277 8 8 chr4 126745225 126745345 -28884775 - MTD LTR MaLR -299 120 1 7 1551 348 248 23 2 chr4 126745519 126745627 -28884493 - Lx8 LINE L1 -1549 5924 5814 7 1551 753 12 0 0 chr4 126745627 126745713 -28884407 + (TTC)n Simple_repeat Simple_repeat 2 87 0 7 1551 1238 35 0 0 chr4 126745713 126745858 -28884262 - B1_Mus2 SINE Alu -2 145 1 7 1551 918 171 0 7 chr4 126745886 126745898 -28884222 - B1_Mus1 SINE Alu 0 148 137 7 1551 654 58 0 0 chr4 126745898 126745985 -28884135 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 7 1551 918 171 0 7 chr4 126745985 126746119 -28884001 - B1_Mus1 SINE Alu -12 136 3 7 1551 505 248 34 17 chr4 126746174 126746293 -28883827 - RSINE1 SINE B4 0 165 45 7 1551 369 151 110 0 chr4 126746274 126746347 -28883773 - B1_Mur4 SINE Alu -48 102 22 7 1551 296 83 0 20 chr4 126746411 126746460 -28883660 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 7 1551 861 108 8 0 chr4 126746460 126746589 -28883531 - B1_Mus2 SINE Alu -6 141 12 7 1552 637 88 0 0 chr4 126746753 126746844 -28883276 + ORR1A3 LTR MaLR 236 326 0 7 1552 9658 133 70 18 chr4 126746844 126747825 -28882295 + ORR1A3-int LTR MaLR 1 1040 -923 7 1552 3082 36 0 0 chr4 126747825 126748188 -28881932 + L1Md_T LINE L1 6220 6582 0 7 1552 9658 133 70 18 chr4 126748188 126749061 -28881059 + ORR1A3-int LTR MaLR 1041 1951 -12 7 1552 261 143 20 0 chr4 126749059 126749108 -28881012 - ORR1C2 LTR MaLR -334 50 1 7 1552 402 152 86 14 chr4 126749095 126749180 -28880940 - ORR1C2-int LTR MaLR 0 1370 1299 7 1552 265 212 15 15 chr4 126749180 126749247 -28880873 - ORR1C2 LTR MaLR 0 384 318 7 1552 650 148 45 168 chr4 126749247 126749467 -28880653 - RMER19C LTR ERVK 0 611 419 7 1552 422 53 0 0 chr4 126749474 126749531 -28880589 - RLTR10B LTR ERVK 0 292 236 7 1552 336 0 0 0 chr4 126749532 126749568 -28880552 - MMERVK10C-int LTR ERVK -7324 257 222 7 1552 233 191 0 0 chr4 126749568 126749610 -28880510 - RLTR27 LTR ERVK -37 272 231 7 1552 1426 50 6 16 chr4 126749610 126749792 -28880328 - MMERVK10C-int LTR ERVK -7401 180 1 7 1552 3717 37 12 0 chr4 126749792 126750223 -28879897 - RLTR10C LTR ERVK 0 436 1 7 1552 710 209 192 0 chr4 126750223 126750400 -28879720 - RMER19B LTR ERVK -291 611 401 7 1552 21 0 0 0 chr4 126750443 126750464 -28879656 + AT_rich Low_complexity Low_complexity 1 21 0 7 1552 1584 52 0 15 chr4 126750489 126750684 -28879436 + B2_Mm1t SINE B2 1 192 -1 7 1552 247 214 157 0 chr4 126750689 126750759 -28879361 + ID4_ SINE ID 3 83 0 7 1552 250 345 23 11 chr4 126750772 126750860 -28879260 - MLT1H-int LTR MaLR -297 1112 1024 7 1552 279 79 0 0 chr4 126750862 126750900 -28879220 + (TTC)n Simple_repeat Simple_repeat 2 39 0 7 1552 1134 76 14 0 chr4 126750904 126751049 -28879071 - B1_Mus1 SINE Alu 0 148 2 7 1552 657 141 25 0 chr4 126751058 126751179 -28878941 - B1_Mus2 SINE Alu -6 141 18 7 1552 309 51 0 0 chr4 126751253 126751292 -28878828 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1552 1082 66 0 0 chr4 126751292 126751428 -28878692 - B1_Mus1 SINE Alu -12 136 1 7 1552 315 0 0 0 chr4 126751532 126751567 -28878553 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1552 827 282 85 108 chr4 126751567 126752028 -28878092 - MT2B LTR ERVL -70 531 1 7 1552 566 277 216 5 chr4 126752028 126752230 -28877890 - B4A SINE B4 -42 250 6 7 1552 990 230 14 0 chr4 126752254 126752467 -28877653 - B3 SINE B2 0 216 1 7 1552 337 294 184 0 chr4 126752521 126752630 -28877490 - ID_B1 SINE B4 -4 220 92 7 1552 635 183 122 0 chr4 126752697 126752828 -28877292 + B1_Mus1 SINE Alu 1 147 -1 7 1552 1213 28 0 40 chr4 126752835 126752986 -28877134 + B1_Mm SINE Alu 3 147 0 7 1552 261 0 0 0 chr4 126752986 126753015 -28877105 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1552 297 0 0 0 chr4 126753074 126753107 -28877013 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1552 1138 76 0 0 chr4 126753122 126753266 -28876854 - B1_Mus2 SINE Alu -2 145 2 7 1552 317 286 76 0 chr4 126753284 126753389 -28876731 + Lx8 LINE L1 7225 7337 -136 7 1552 383 287 74 0 chr4 126753717 126753839 -28876281 + MTE2b LTR MaLR 1 131 -248 7 1552 1483 68 16 5 chr4 126753985 126754177 -28875943 - B2_Mm2 SINE B2 0 195 2 7 1552 538 110 33 0 chr4 126755043 126755134 -28874986 + URR1A DNA MER1_type 80 173 -53 7 1552 329 246 35 17 chr4 126756251 126756367 -28873753 + MLT1A1 LTR MaLR 291 408 0 7 1552 1110 119 42 26 chr4 126756453 126756643 -28873477 + B2_Mm2 SINE B2 3 195 0 7 1552 196 377 70 0 chr4 126756784 126756898 -28873222 - MIR SINE MIR -121 141 20 7 1552 682 222 15 0 chr4 126756993 126757128 -28872992 - ID_B1 SINE B4 -8 216 80 7 1552 945 152 220 0 chr4 126757787 126757964 -28872156 - B3 SINE B2 0 216 1 7 1552 22 0 0 0 chr4 126757973 126757995 -28872125 + AT_rich Low_complexity Low_complexity 1 22 0 7 1552 367 273 102 19 chr4 126757995 126758152 -28871968 - B3A SINE B2 -7 209 40 7 1552 715 203 79 37 chr4 126758142 126758357 -28871763 - ORR1C1 LTR MaLR -154 224 1 7 1552 200 59 29 0 chr4 126758448 126758482 -28871638 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1552 285 186 17 0 chr4 126758497 126758556 -28871564 - MTE-int LTR MaLR -1241 339 280 7 1552 501 188 143 14 chr4 126758638 126758778 -28871342 + Lx7 LINE L1 7539 7696 0 7 1552 571 143 163 23 chr4 126758799 126758928 -28871192 - B1_Mus1 SINE Alu 0 148 2 7 1552 21 71 0 0 chr4 126758928 126758970 -28871150 + AT_rich Low_complexity Low_complexity 1 42 0 7 1552 279 269 40 86 chr4 126759005 126759180 -28870940 - Lx9 LINE L1 -172 7472 7306 7 1552 361 305 0 0 chr4 126759241 126759336 -28870784 - ORR1E LTR MaLR -205 154 60 7 1552 346 271 61 20 chr4 126759375 126759522 -28870598 + ORR1E LTR MaLR 25 177 -182 7 1552 277 228 133 38 chr4 126759557 126759662 -28870458 + ORR1E LTR MaLR 260 374 -5 7 1552 357 241 35 13 chr4 126759713 126759834 -28870286 + B1_Mur3 SINE Alu 1 120 0 7 1552 846 222 29 39 chr4 126759836 126760042 -28870078 - B3 SINE B2 -12 204 1 7 1552 2680 166 44 65 chr4 126760128 126760759 -28869361 - RMER20B LTR ERVK -3 624 7 7 1552 541 227 50 8 chr4 126760761 126760881 -28869239 - B3A SINE B2 -30 168 44 7 1552 929 232 50 0 chr4 126760936 126761134 -28868986 + B3 SINE B2 2 209 -7 7 1552 351 0 0 0 chr4 126761377 126761416 -28868704 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 1552 362 279 63 14 chr4 126761420 126761562 -28868558 - RSINE1 SINE B4 0 165 17 7 1552 449 211 122 23 chr4 126761953 126762084 -28868036 + B1_Mur1 SINE Alu 6 149 0 7 1552 225 94 0 0 chr4 126762598 126762630 -28867490 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1552 356 280 34 27 chr4 126762630 126762777 -28867343 - B1F SINE Alu -1 148 1 7 1552 498 238 8 32 chr4 126762856 126762982 -28867138 - B3A SINE B2 -75 123 1 7 1552 475 255 103 13 chr4 126763093 126763248 -28866872 + ID_B1 SINE B4 1 169 -55 7 1552 260 250 17 0 chr4 126763843 126763903 -28866217 + B4A SINE B4 219 279 -13 7 1552 1328 96 0 31 chr4 126764450 126764644 -28865476 + B2_Mm2 SINE B2 1 188 -7 7 1552 725 174 58 0 chr4 126764710 126764848 -28865272 + B1_Mus2 SINE Alu 1 146 -1 7 1552 421 238 0 47 chr4 126764924 126765030 -28865090 + PB1D10 SINE Alu 12 112 -5 7 1552 2461 46 3 0 chr4 126765036 126765339 -28864781 + L1Md_F2 LINE L1 6267 6570 -12 7 1552 778 161 42 0 chr4 126765829 126765972 -28864148 - B1_Mur3 SINE Alu 0 149 1 7 1552 1133 54 7 26 chr4 126766141 126766292 -28863828 + B1_Mus1 SINE Alu 1 148 0 7 1552 897 160 28 0 chr4 126766851 126766995 -28863125 + B1_Mur4 SINE Alu 2 149 -1 7 1552 1225 61 0 0 chr4 126767001 126767149 -28862971 + B1_Mus1 SINE Alu 1 148 0 7 1552 221 0 35 0 chr4 126767158 126767187 -28862933 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1552 1435 83 16 10 chr4 126767216 126767410 -28862710 + B2_Mm2 SINE B2 1 195 0 7 1552 275 246 16 0 chr4 126767429 126767490 -28862630 + ID4 SINE ID 16 77 -6 7 1552 1028 191 24 5 chr4 126767766 126767977 -28862143 - B3 SINE B2 -1 215 1 7 1552 519 285 43 7 chr4 126767987 126768125 -28861995 - ID_B1 SINE B4 0 224 82 7 1552 1120 56 21 0 chr4 126768186 126768330 -28861790 + B1_Mus2 SINE Alu 1 147 0 7 1552 192 40 0 0 chr4 126768330 126768355 -28861765 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 7 1552 27 29 0 0 chr4 126768414 126768448 -28861672 + AT_rich Low_complexity Low_complexity 1 34 0 7 1552 356 351 77 51 chr4 126768480 126768636 -28861484 - RSINE1 SINE B4 0 165 6 7 1552 821 54 9 0 chr4 126768755 126768867 -28861253 - B1_Mm SINE Alu 0 147 35 7 1552 786 192 0 0 chr4 126768878 126769008 -28861112 - B3 SINE B2 -86 130 1 7 1552 605 272 29 73 chr4 126769098 126769193 -28860927 + B4 SINE B4 2 87 -205 8 1552 671 214 14 28 chr4 126769193 126769337 -28860783 + B1_Mur1 SINE Alu 2 143 -6 8 1552 332 268 104 67 chr4 126769320 126769484 -28860636 + B4 SINE B4 70 239 -53 8 1552 29 0 0 0 chr4 126769758 126769787 -28860333 + AT_rich Low_complexity Low_complexity 1 29 0 8 1552 396 167 0 0 chr4 126770394 126770466 -28859654 + CT-rich Low_complexity Low_complexity 2 73 0 8 1552 315 309 0 0 chr4 126770500 126770581 -28859539 - PB1D7 SINE Alu -16 104 24 8 1552 189 132 0 0 chr4 126770612 126770650 -28859470 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 8 1552 1100 50 7 28 chr4 126770654 126770799 -28859321 - B1_Mus1 SINE Alu -2 146 5 8 1552 494 248 18 0 chr4 126770906 126771019 -28859101 + PB1D9 SINE Alu 1 115 -5 8 1552 420 191 0 0 chr4 126771026 126771115 -28859005 + GA-rich Low_complexity Low_complexity 3 91 0 8 1552 1203 42 0 0 chr4 126771579 126771721 -28858399 - B1_Mus1 SINE Alu -5 143 2 8 1552 3490 229 54 58 chr4 126771795 126771850 -28858270 - RMER1C Other Other 0 1342 1292 8 1552 3091 53 8 10 chr4 126771850 126772247 -28857873 - MTA_Mm LTR MaLR 0 396 1 8 1552 3490 244 47 47 chr4 126772247 126773447 -28856673 - RMER1C Other Other -51 1291 171 8 1552 32 26 0 0 chr4 126773742 126773781 -28856339 + AT_rich Low_complexity Low_complexity 1 39 0 8 1552 1222 41 7 0 chr4 126773781 126773927 -28856193 - B1_Mm SINE Alu 0 147 1 8 1552 3734 179 76 71 chr4 126773927 126774809 -28855311 - RMER19B LTR ERVK -16 886 1 8 1552 390 292 22 30 chr4 126774873 126775007 -28855113 - B4 SINE B4 -157 135 3 8 1552 328 274 105 0 chr4 126775058 126775153 -28854967 + B4 SINE B4 1 105 -187 8 1552 862 105 0 0 chr4 126775173 126775297 -28854823 - B1_Mus1 SINE Alu -23 125 2 8 1552 296 248 7 21 chr4 126775297 126775334 -28854786 - ORR1B1-int LTR MaLR -862 647 613 8 1552 1180 57 0 0 chr4 126775517 126775657 -28854463 + B1_Mus1 SINE Alu 1 140 -8 8 1552 1504 17 78 0 chr4 126776074 126776092 -28854028 - B2_Mm1a SINE B2 0 193 176 8 1552 207 0 0 0 chr4 126776092 126776115 -28854005 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1552 1504 17 78 0 chr4 126776115 126776275 -28853845 - B2_Mm1a SINE B2 -18 175 2 8 1552 306 73 0 0 chr4 126776647 126776688 -28853432 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1552 2571 119 76 91 chr4 126776691 126776739 -28853381 + RMER4B LTR ERVK 1 38 -547 8 1552 1579 62 0 0 chr4 126776739 126776932 -28853188 + B2_Mm1a SINE B2 1 193 0 8 1552 2571 119 76 91 chr4 126776932 126777446 -28852674 + RMER4B LTR ERVK 39 555 -30 8 1552 456 280 111 69 chr4 126777508 126777769 -28852351 - B4 SINE B4 -11 281 10 8 1552 730 229 91 5 chr4 126778253 126778451 -28851669 - B3 SINE B2 0 216 2 8 1552 486 231 207 0 chr4 126778610 126778731 -28851389 + B1_Mur2 SINE Alu 2 147 -2 8 1552 391 298 87 46 chr4 126778753 126778971 -28851149 + MER2 DNA MER2_type 88 314 -31 8 1552 630 0 0 0 chr4 126779290 126779360 -28850760 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 8 1552 695 83 0 0 chr4 126779360 126779456 -28850664 - B1_Mus2 SINE Alu -8 139 44 8 1552 389 238 175 32 chr4 126779850 126779976 -28850144 - ID_B1 SINE B4 -1 223 80 8 1552 1229 54 0 0 chr4 126780356 126780504 -28849616 + B1_Mus1 SINE Alu 1 148 0 8 1552 189 74 0 0 chr4 126780504 126780531 -28849589 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 8 1552 415 257 76 0 chr4 126781067 126781172 -28848948 - RSINE1 SINE B4 -10 155 43 8 1552 216 0 0 0 chr4 126781243 126781267 -28848853 + (TC)n Simple_repeat Simple_repeat 2 25 0 8 1552 258 32 0 0 chr4 126781267 126781297 -28848823 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1552 488 270 61 36 chr4 126781300 126781465 -28848655 - B3A SINE B2 -28 170 2 8 1552 759 196 49 35 chr4 126781768 126781911 -28848209 - B1_Mur4 SINE Alu -5 145 1 8 1552 224 167 62 0 chr4 126782293 126782341 -28847779 - PB1D10 SINE Alu 0 117 67 8 1552 256 314 29 0 chr4 126782822 126782892 -28847228 - ID4_ SINE ID -9 74 3 8 1552 330 206 0 0 chr4 126782910 126782983 -28847137 + T-rich Low_complexity Low_complexity 1 73 0 8 1552 978 128 0 7 chr4 126783481 126783631 -28846489 + B1_Mur4 SINE Alu 2 150 0 8 1552 23 0 0 0 chr4 126783768 126783791 -28846329 + AT_rich Low_complexity Low_complexity 1 23 0 8 1552 1182 192 98 53 chr4 126784125 126784483 -28845637 - MTD LTR MaLR -36 383 10 8 1552 230 341 117 14 chr4 126784661 126784875 -28845245 - L4 LINE RTE -121 1908 1673 8 1552 406 186 50 40 chr4 126785714 126785815 -28844305 - U6 snRNA snRNA -5 102 1 8 1552 1017 234 5 0 chr4 126786126 126786335 -28843785 + B3 SINE B2 2 211 -5 8 1552 231 36 0 0 chr4 126786533 126786561 -28843559 + (TATG)n Simple_repeat Simple_repeat 2 29 0 8 1552 553 211 81 22 chr4 126786567 126786703 -28843417 - RSINE1 SINE B4 0 165 22 8 1552 677 220 70 61 chr4 126786698 126786926 -28843194 - B4A SINE B4 -62 230 1 8 1552 225 0 0 0 chr4 126787028 126787053 -28843067 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1552 183 205 0 0 chr4 126787276 126787315 -28842805 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 8 1552 440 298 6 53 chr4 126788168 126788338 -28841782 + RSINE1 SINE B4 4 165 0 8 1552 3220 55 2 14 chr4 126788475 126788897 -28841223 - L1Md_F2 LINE L1 -1 6581 6165 8 1552 27 49 0 0 chr4 126789209 126789250 -28840870 + AT_rich Low_complexity Low_complexity 1 41 0 8 1552 2354 63 34 22 chr4 126789339 126789662 -28840458 - ORR1A2 LTR MaLR 0 327 1 8 1552 2039 188 17 3 chr4 126789695 126790057 -28840063 - ORR1B2 LTR MaLR 0 367 1 8 1552 1043 216 5 42 chr4 126790252 126790465 -28839655 + B3 SINE B2 1 205 -11 8 1552 797 210 192 6 chr4 126790465 126790647 -28839473 + B3 SINE B2 1 216 0 8 1552 358 252 55 70 chr4 126790721 126790849 -28839271 - MER58A DNA MER1_type -48 176 51 8 1552 1901 146 34 0 chr4 126790867 126791190 -28838930 - ORR1B1 LTR MaLR -8 386 53 8 1552 236 217 56 28 chr4 126791288 126791359 -28838761 - MTE2b LTR MaLR -4 375 303 8 1552 284 211 0 0 chr4 126791656 126791713 -28838407 + ID_B1 SINE B4 132 188 -36 8 1552 309 26 0 0 chr4 126791721 126791759 -28838361 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 8 1552 215 279 138 8 chr4 126791866 126791989 -28838131 - L2 LINE L2 -907 2512 2374 8 1552 365 284 21 0 chr4 126792066 126792161 -28837959 + B1F1 SINE Alu 1 97 -52 8 1552 197 222 16 0 chr4 126792167 126792230 -28837890 + GA-rich Low_complexity Low_complexity 2 65 0 8 1552 229 222 0 60 chr4 126792249 126792316 -28837804 + ID4 SINE ID 5 67 -16 8 1552 543 341 6 6 chr4 126792386 126792551 -28837569 - MER44D DNA MER2_type -540 165 1 8 1552 226 167 179 71 chr4 126792849 126792914 -28837206 + B4A SINE B4 29 102 -190 8 1552 734 204 25 0 chr4 126792914 126793071 -28837049 + ORR1D1 LTR MaLR 2 162 -212 8 1552 333 365 119 22 chr4 126793078 126793305 -28836815 + L1M5 LINE L1 4813 5061 -1085 8 1552 513 205 77 23 chr4 126793376 126793506 -28836614 + B1_Mur1 SINE Alu 2 138 -11 8 1552 234 264 35 0 chr4 126793564 126793631 -28836489 - BC1_Mm scRNA scRNA -10 73 5 8 1552 229 294 15 0 chr4 126793771 126793839 -28836281 + ID_B1 SINE B4 78 146 -78 8 1552 288 311 9 36 chr4 126793785 126793895 -28836225 + PB1D10 SINE Alu 11 117 0 8 1552 723 118 0 0 chr4 126793953 126794063 -28836057 + B3 SINE B2 100 209 -7 8 1552 415 256 8 57 chr4 126794745 126794869 -28835251 - PB1D7 SINE Alu 0 120 3 8 1552 693 174 22 15 chr4 126794898 126795032 -28835088 - B1_Mur4 SINE Alu -8 142 8 8 1552 340 312 7 92 chr4 126795621 126795762 -28834358 - RSINE1 SINE B4 -26 139 11 8 1552 256 260 159 8 chr4 126795897 126796029 -28834091 + L2a LINE L2 3275 3426 0 8 1552 4333 60 11 0 chr4 126796184 126796722 -28833398 + L1_Mus1 LINE L1 6024 6567 0 8 1552 1109 72 149 6 chr4 126796750 126796918 -28833202 + B2_Mm2 SINE B2 1 192 -3 8 1552 25 31 0 0 chr4 126796994 126797026 -28833094 + AT_rich Low_complexity Low_complexity 1 32 0 8 1552 322 200 38 0 chr4 126797119 126797224 -28832896 + (TATG)n Simple_repeat Simple_repeat 4 112 0 8 1552 207 0 0 0 chr4 126797287 126797310 -28832810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1552 769 159 0 104 chr4 126797310 126797464 -28832656 - B1_Mus2 SINE Alu -9 138 1 8 1552 275 248 85 31 chr4 126797929 126798058 -28832062 + Charlie23a DNA MER1_type 64 199 -140 8 1552 203 161 0 0 chr4 126798083 126798114 -28832006 + polypyrimidine Low_complexity Low_complexity 2 32 0 8 1552 465 254 0 17 chr4 126798438 126798554 -28831566 + PB1D10 SINE Alu 3 116 -1 8 1552 224 30 30 0 chr4 126798633 126798666 -28831454 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1552 1073 71 0 21 chr4 126798669 126798813 -28831307 - B1_Mus1 SINE Alu -6 142 2 8 1552 752 154 14 34 chr4 126798995 126799143 -28830977 - B1_Mur4 SINE Alu 0 150 6 8 1552 234 301 14 14 chr4 126799193 126799267 -28830853 - ID4 SINE ID -9 74 1 8 1552 1166 44 0 0 chr4 126799320 126799456 -28830664 - B1_Mus1 SINE Alu -8 140 5 8 1552 586 371 35 45 chr4 126799684 126800891 -28829229 + Charlie10 DNA MER1_type 638 1909 -848 8 1552 673 147 26 8 chr4 126801806 126801923 -28828197 - B1_Mm SINE Alu 0 147 29 8 1552 198 0 0 0 chr4 126802491 126802513 -28827607 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 8 1552 246 341 106 0 chr4 126802513 126802636 -28827484 - B1F1 SINE Alu -12 137 2 9 1552 463 203 35 57 chr4 126803737 126803878 -28826242 - B1_Mur4 SINE Alu -1 149 12 9 1552 309 156 62 0 chr4 126804147 126804243 -28825877 + CT-rich Low_complexity Low_complexity 2 103 0 9 1552 344 289 0 0 chr4 126804321 126804404 -28825716 - RMER30 DNA MER1_type -1 201 119 9 1552 800 245 94 0 chr4 126806683 126806875 -28823245 + B3 SINE B2 1 210 -6 9 1552 182 62 31 0 chr4 126807312 126807344 -28822776 + (TGG)n Simple_repeat Simple_repeat 1 33 0 9 1552 463 234 27 27 chr4 126807573 126807683 -28822437 - PB1 SINE Alu -3 124 15 9 1552 506 270 58 0 chr4 126807973 126808110 -28822010 + RSINE1 SINE B4 2 146 -19 9 1552 340 332 237 6 chr4 126808146 126808459 -28821661 - MLT1L LTR MaLR -96 514 129 9 1552 854 150 13 45 chr4 126809300 126809454 -28820666 - B1_Mur4 SINE Alu -1 149 1 9 1552 189 286 202 18 chr4 126809905 126810019 -28820101 - MIRb SINE MIR -116 152 18 9 1552 973 131 11 0 chr4 126810023 126810199 -28819921 + (TCC)n Simple_repeat Simple_repeat 3 180 0 9 1552 554 88 59 2 chr4 126810209 126810322 -28819798 - B1_Mus1 SINE Alu -18 130 13 9 1552 1419 65 11 21 chr4 126810698 126810888 -28819232 - B2_Mm2 SINE B2 -6 189 2 9 1552 213 65 0 0 chr4 126811571 126811602 -28818518 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 9 1552 1170 62 0 0 chr4 126811602 126811746 -28818374 - B1_Mus1 SINE Alu -4 144 1 9 1552 406 296 84 0 chr4 126811870 126812012 -28818108 - L1MC LINE L1 -2131 5751 5598 9 1552 269 291 0 25 chr4 126812208 126812289 -28817831 + ID4 SINE ID 1 79 -4 9 1552 337 279 9 19 chr4 126812608 126812714 -28817406 - MTEb LTR MaLR -6 373 269 9 1552 510 220 195 27 chr4 126813011 126813203 -28816917 - MTD LTR MaLR -14 405 196 9 1552 663 166 14 7 chr4 126813207 126813338 -28816782 + CT-rich Low_complexity Low_complexity 18 149 0 9 1552 1195 105 19 68 chr4 126813338 126813543 -28816577 - B2_Mm2 SINE B2 0 195 1 9 1552 663 166 14 7 chr4 126813543 126813557 -28816563 + polypyrimidine Low_complexity Low_complexity 4 17 0 9 1552 804 242 77 0 chr4 126813572 126813766 -28816354 - B3 SINE B2 -6 210 2 9 1552 358 290 105 0 chr4 126813776 126813900 -28816220 - B3 SINE B2 -5 211 75 9 1552 574 240 14 175 chr4 126813947 126814047 -28816073 - MTD LTR MaLR -214 205 108 9 1552 1460 75 11 0 chr4 126814047 126814235 -28815885 + B2_Mm2 SINE B2 1 190 -5 9 1552 574 240 14 175 chr4 126814235 126814351 -28815769 - MTD LTR MaLR -312 107 24 9 1552 737 117 7 21 chr4 126814469 126814609 -28815511 + (TTCC)n Simple_repeat Simple_repeat 4 141 0 9 1552 818 147 42 7 chr4 126814609 126814753 -28815367 - B1_Mur2 SINE Alu 0 149 1 9 1552 396 0 0 0 chr4 126815374 126815418 -28814702 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1552 403 186 23 0 chr4 126815829 126815915 -28814205 + B1_Mus2 SINE Alu 59 146 -1 9 1552 319 286 91 69 chr4 126815923 126816287 -28813833 + RMER10A LTR ERVL 46 417 -25 9 1552 323 23 0 22 chr4 126816289 126816334 -28813786 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1552 443 252 83 38 chr4 126816463 126816620 -28813500 - RSINE1 SINE B4 0 165 2 9 1552 735 171 7 28 chr4 126816831 126816975 -28813145 - B1_Mur2 SINE Alu -1 148 8 9 1552 892 253 66 24 chr4 126817300 126817823 -28812297 - Zaphod DNA Tip100 -8 4023 3127 9 1552 580 268 124 15 chr4 126817825 126818026 -28812094 + ID_B1 SINE B4 2 224 0 9 1552 25 83 0 0 chr4 126818056 126818116 -28812004 + AT_rich Low_complexity Low_complexity 1 60 0 9 1552 310 117 0 76 chr4 126818127 126818198 -28811922 - B2_Mm2 SINE B2 -106 110 47 9 1552 1315 97 11 0 chr4 126818245 126818421 -28811699 - B2_Mm1t SINE B2 -14 179 2 9 1552 22 0 0 0 chr4 126818433 126818455 -28811665 + AT_rich Low_complexity Low_complexity 1 22 0 9 1552 668 198 0 0 chr4 126818762 126818873 -28811247 - PB1D9 SINE Alu -8 112 2 9 1552 671 246 151 0 chr4 126819151 126819337 -28810783 + ID_B1 SINE B4 10 223 -1 9 1552 336 379 11 75 chr4 126819534 126819722 -28810398 + L1MEg2 LINE L1 705 880 -5572 9 1552 856 251 89 50 chr4 126819740 126820021 -28810099 - B4A SINE B4 0 292 1 9 1552 305 319 53 27 chr4 126820110 126820297 -28809823 + L1MEg2 LINE L1 2068 2259 -5291 9 1552 1068 102 6 0 chr4 126820297 126820454 -28809666 + B2_Mm2 SINE B2 2 159 -36 9 1552 425 66 16 0 chr4 126820458 126820519 -28809601 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1552 339 263 17 0 chr4 126820714 126820806 -28809314 + ID4 SINE ID 6 99 -53 9 1552 563 162 0 17 chr4 126820806 126820925 -28809195 + GA-rich Low_complexity Low_complexity 4 120 0 9 1552 268 304 51 0 chr4 126820964 126821043 -28809077 + ID_B1 SINE B4 84 166 -58 9 1552 246 159 0 0 chr4 126821535 126821579 -28808541 + ID_B1 SINE B4 180 223 -1 9 1552 610 277 71 0 chr4 126821582 126821723 -28808397 + RSINE1 SINE B4 3 153 -12 9 1552 396 0 0 0 chr4 126821751 126821795 -28808325 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1552 684 150 69 30 chr4 126821930 126822061 -28808059 - B1_Mur1 SINE Alu -5 144 9 9 1552 423 0 0 0 chr4 126822358 126822405 -28807715 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1552 835 151 72 0 chr4 126822788 126822927 -28807193 + B1_Mur4 SINE Alu 2 150 0 9 1552 192 77 0 0 chr4 126822974 126823000 -28807120 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1552 261 273 76 0 chr4 126823443 126823509 -28806611 + ID4 SINE ID 2 72 -11 9 1552 207 69 0 0 chr4 126823523 126823552 -28806568 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1552 909 314 26 4 chr4 126823552 126823821 -28806299 + B4 SINE B4 6 280 -12 9 1552 181 40 120 0 chr4 126824049 126824099 -28806021 + (CAAAC)n Simple_repeat Simple_repeat 2 57 0 9 1552 441 289 16 0 chr4 126824257 126824385 -28805735 + ID_B1 SINE B4 95 224 0 9 1552 454 256 6 138 chr4 126824444 126824603 -28805517 + B3 SINE B2 75 212 -4 9 1552 818 184 7 0 chr4 126824609 126824756 -28805364 + B1_Mur2 SINE Alu 1 148 -1 9 1552 799 125 31 0 chr4 126824789 126824917 -28805203 + B1_Mus2 SINE Alu 2 133 -14 9 1552 1638 31 5 0 chr4 126825030 126825221 -28804899 + B2_Mm1t SINE B2 2 193 0 9 1552 907 79 53 127 chr4 126825385 126825574 -28804546 + B2_Mm2 SINE B2 15 189 -6 9 1552 787 308 28 68 chr4 126825707 126826205 -28803915 + L1M2 LINE L1 2189 2666 -3477 9 1552 383 217 11 21 chr4 126826208 126826302 -28803818 - L1MA4A LINE L1 -356 5947 5855 9 1552 34 42 0 0 chr4 126826322 126826370 -28803750 + AT_rich Low_complexity Low_complexity 1 48 0 9 1552 204 40 0 0 chr4 126826434 126826459 -28803661 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1552 288 0 0 0 chr4 126826459 126826490 -28803630 + (TATG)n Simple_repeat Simple_repeat 3 34 0 9 1552 304 333 39 0 chr4 126826494 126826596 -28803524 - RSINE1 SINE B4 -14 151 46 9 1552 365 202 29 96 chr4 126826604 126826623 -28803497 - PB1D10 SINE Alu -9 108 12 9 1552 371 212 35 0 chr4 126826623 126826708 -28803412 - ID_B1 SINE B4 -44 180 93 9 1552 21 82 0 0 chr4 126826760 126826809 -28803311 + AT_rich Low_complexity Low_complexity 1 49 0 9 1552 285 323 97 0 chr4 126827998 126828091 -28802029 + ID_B1 SINE B4 83 184 -40 9 1552 442 18 0 0 chr4 126828302 126828357 -28801763 + B1_Mus2 SINE Alu 78 132 -15 9 1552 252 0 0 0 chr4 126828357 126828385 -28801735 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1552 707 199 36 14 chr4 126828392 126828530 -28801590 + B1_Mur1 SINE Alu 2 142 -7 9 1552 195 104 41 20 chr4 126828752 126828801 -28801319 + T-rich Low_complexity Low_complexity 2 51 0 9 1552 376 254 83 58 chr4 126828833 126828954 -28801166 - B1F1 SINE Alu -2 125 2 9 1552 554 121 12 6 chr4 126829020 126829136 -28800984 - B1_Mus2 SINE Alu 0 120 2 9 1552 582 233 16 65 chr4 126829291 126829475 -28800645 - B2_Mm2 SINE B2 -18 177 3 9 1552 35 41 0 0 chr4 126829548 126829597 -28800523 + AT_rich Low_complexity Low_complexity 1 49 0 9 1552 36 0 0 0 chr4 126829678 126829714 -28800406 + AT_rich Low_complexity Low_complexity 1 36 0 9 1552 639 256 19 155 chr4 126829724 126829937 -28800183 + B3A SINE B2 2 185 -10 9 1552 821 181 36 0 chr4 126830242 126830380 -28799740 - B1_Mur3 SINE Alu -5 144 2 9 1552 1700 179 112 23 chr4 126830470 126830854 -28799266 + MTD LTR MaLR 2 419 0 9 1552 378 263 135 18 chr4 126830854 126831024 -28799096 + MLT2B4 LTR ERVL 4 193 -363 9 1552 2060 122 6 60 chr4 126831294 126831642 -28798478 + ORR1A4 LTR MaLR 1 329 0 9 1552 663 192 15 0 chr4 126832034 126832164 -28797956 - B1_Mur3 SINE Alu -1 148 17 9 1552 216 0 0 0 chr4 126832168 126832192 -28797928 + (ATGTG)n Simple_repeat Simple_repeat 1 24 0 9 1552 492 269 24 42 chr4 126832264 126832431 -28797689 + RSINE1 SINE B4 2 165 0 9 1552 28 0 0 0 chr4 126832431 126832459 -28797661 + AT_rich Low_complexity Low_complexity 1 28 0 9 1552 378 272 53 49 chr4 126832586 126832829 -28797291 + MLT2B4 LTR ERVL 207 564 -3 9 1552 497 216 17 218 chr4 126833090 126833269 -28796851 - B3A SINE B2 0 198 46 9 1552 327 25 0 0 chr4 126833589 126833629 -28796491 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 9 1552 747 199 7 33 chr4 126833629 126833780 -28796340 + B1_Mur3 SINE Alu 2 148 -1 9 1552 252 0 0 0 chr4 126833792 126833820 -28796300 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 1552 1028 43 0 28 chr4 126834204 126834347 -28795773 + B1_Mus2 SINE Alu 9 147 0 9 1552 471 18 0 0 chr4 126834352 126834408 -28795712 + (CAACC)n Simple_repeat Simple_repeat 2 57 0 9 1552 653 284 20 40 chr4 126834611 126834813 -28795307 + B3A SINE B2 1 198 0 1 1552 21 36 0 0 chr4 126834820 126834848 -28795272 + AT_rich Low_complexity Low_complexity 1 28 0 1 1552 350 286 19 9 chr4 126834858 126834964 -28795156 + B3A SINE B2 1 107 -91 1 1552 748 189 397 0 chr4 126834964 126835229 -28794891 - ORR1D1 LTR MaLR 0 370 1 1 1552 315 0 0 0 chr4 126835272 126835307 -28794813 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1552 24 0 0 0 chr4 126835423 126835447 -28794673 + AT_rich Low_complexity Low_complexity 1 24 0 1 1552 815 127 74 7 chr4 126835448 126835583 -28794537 - B1_Mur4 SINE Alu -1 149 6 1 1552 224 273 41 0 chr4 126835683 126835855 -28794265 + (CTTAG)n Simple_repeat Simple_repeat 1 179 0 1 1552 280 278 22 22 chr4 126835872 126835964 -28794156 - PB1 SINE Alu -12 115 24 1 1552 236 230 0 90 chr4 126836089 126836156 -28793964 - MER5A1 DNA MER1_type -91 75 15 1 1552 324 0 0 0 chr4 126836158 126836194 -28793926 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1552 867 226 43 33 chr4 126836213 126836423 -28793697 - B3 SINE B2 -4 212 1 1 1552 313 293 14 30 chr4 126836481 126836611 -28793509 - B1F SINE Alu -21 126 3 1 1552 746 205 56 6 chr4 126836761 126836923 -28793197 + MT2A LTR ERVL 3 172 -361 1 1552 1114 270 58 3 chr4 126837063 126837390 -28792730 + MT2A LTR ERVL 158 502 -31 1 1552 624 168 0 32 chr4 126837452 126837495 -28792625 + polypyrimidine Low_complexity Low_complexity 110 149 0 1 1552 1046 140 6 0 chr4 126837495 126837674 -28792446 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1552 624 168 0 32 chr4 126837674 126837784 -28792336 + polypyrimidine Low_complexity Low_complexity 2 109 0 1 1552 1161 60 0 0 chr4 126837784 126837934 -28792186 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 1 1552 775 148 0 23 chr4 126837934 126838065 -28792055 - B1_Mus1 SINE Alu -12 136 9 1 1552 2104 116 3 0 chr4 126838109 126838427 -28791693 + ORR1A2 LTR MaLR 1 319 -8 1 1552 509 320 14 55 chr4 126838617 126838835 -28791285 - ID_B1 SINE B4 -14 210 2 1 1552 951 314 107 47 chr4 126838855 126839340 -28790780 - MLT2B2 LTR ERVL 0 515 2 1 1552 344 172 128 59 chr4 126839457 126839560 -28790560 - B1F SINE Alu -4 145 37 1 1552 2456 50 6 3 chr4 126839560 126839884 -28790236 - L1Md_F2 LINE L1 -1 6581 6257 1 1552 308 243 98 90 chr4 126839884 126839902 -28790218 - B1F2 SINE Alu -113 36 23 1 1552 180 0 0 0 chr4 126839935 126839955 -28790165 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1552 917 298 10 52 chr4 126839980 126840285 -28789835 - B4A SINE B4 0 292 1 1 1552 602 179 0 18 chr4 126840575 126840689 -28789431 - BC1_Mm scRNA scRNA -40 112 1 1 1552 25 0 0 0 chr4 126840926 126840951 -28789169 + GC_rich Low_complexity Low_complexity 1 25 0 1 1552 299 236 190 6 chr4 126840978 126841042 -28789078 - MLT1H LTR MaLR -144 405 321 1 1552 1310 234 88 12 chr4 126841042 126841384 -28788736 + ORR1D2 LTR MaLR 3 370 0 1 1552 299 236 190 6 chr4 126841384 126841477 -28788643 - MLT1H LTR MaLR -229 320 219 1 1552 734 240 60 107 chr4 126842342 126842492 -28787628 - ID_B1 SINE B4 -1 223 95 1 1552 1172 55 0 0 chr4 126842492 126842638 -28787482 - B1_Mm SINE Alu 0 147 2 1 1552 734 240 60 107 chr4 126842638 126842720 -28787400 - ID_B1 SINE B4 -130 94 2 1 1552 636 195 241 0 chr4 126842749 126842923 -28787197 - B3 SINE B2 0 216 1 1 1552 1014 110 0 0 chr4 126842956 126843102 -28787018 - B1_Mus1 SINE Alu 0 148 3 1 1552 1165 163 19 14 chr4 126843355 126843566 -28786554 - B3 SINE B2 -4 212 1 1 1552 1111 74 74 0 chr4 126843629 126843792 -28786328 - B2_Mm2 SINE B2 -19 176 2 1 1552 481 202 3 22 chr4 126843873 126843970 -28786150 + B4 SINE B4 2 101 -64 1 1552 216 86 0 0 chr4 126843970 126844005 -28786115 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1552 666 313 52 0 chr4 126844005 126844216 -28785904 + B4 SINE B4 67 288 -4 1 1552 534 252 18 55 chr4 126844525 126844689 -28785431 - RSINE1 SINE B4 -5 160 3 1 1552 23 54 0 0 chr4 126846265 126846302 -28783818 + GC_rich Low_complexity Low_complexity 1 37 0 1 1552 221 57 0 28 chr4 126846336 126846372 -28783748 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 1 1552 24 0 0 0 chr4 126846550 126846574 -28783546 + GC_rich Low_complexity Low_complexity 1 24 0 1 1552 364 296 0 14 chr4 126847108 126847252 -28782868 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1552 298 275 32 32 chr4 126847936 126848060 -28782060 - MIRc SINE MIR -110 158 35 1 1552 226 255 119 30 chr4 126848450 126848551 -28781569 - MIR3 SINE MIR -13 195 86 1 1552 975 52 0 0 chr4 126849189 126849323 -28780797 + (TG)n Simple_repeat Simple_repeat 2 135 0 1 1552 186 286 0 0 chr4 126849705 126849747 -28780373 - MIRc SINE MIR -115 153 112 1 1552 230 264 62 103 chr4 126852593 126852690 -28777430 - MLT2B3 LTR ERVL -261 293 201 1 1552 843 92 8 0 chr4 126853106 126853225 -28776895 - B1_Mus2 SINE Alu -27 120 1 1 1552 262 265 8 15 chr4 126853225 126853253 -28776867 - ORR1B1-int LTR MaLR -861 648 622 1 1552 640 231 7 0 chr4 126854051 126854198 -28775922 - B1F SINE Alu -1 148 1 1 1552 599 229 50 38 chr4 126854560 126854719 -28775401 + RSINE1 SINE B4 4 164 -1 1 1552 837 238 40 33 chr4 126854856 126855082 -28775038 - ID_B1 SINE B4 -46 246 15 1 1552 263 318 54 32 chr4 126855183 126855368 -28774752 + L2a LINE L2 2991 3179 -247 1 1552 23 0 0 0 chr4 126855396 126855419 -28774701 + AT_rich Low_complexity Low_complexity 1 23 0 1 1552 232 299 63 63 chr4 126855581 126855724 -28774396 - L2 LINE L2 -609 2810 2668 1 1552 516 140 0 0 chr4 126855759 126855852 -28774268 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1552 357 117 0 0 chr4 126855883 126855943 -28774177 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1552 206 232 18 0 chr4 126856934 126856990 -28773130 + GA-rich Low_complexity Low_complexity 1 57 0 1 1552 292 347 35 49 chr4 126858569 126858772 -28771348 + MIR SINE MIR 32 231 -31 1 1552 575 204 28 49 chr4 126858797 126858941 -28771179 + B1F1 SINE Alu 1 141 -8 1 1552 565 261 108 11 chr4 126858951 126859137 -28770983 + B3 SINE B2 1 204 -12 1 1552 281 306 0 0 chr4 126859171 126859243 -28770877 + B4 SINE B4 80 151 -141 1 1552 304 246 15 0 chr4 126859276 126859341 -28770779 - ID4 SINE ID -15 68 3 1 1552 344 133 65 6 chr4 126859346 126859416 -28770704 + B1F2 SINE Alu 64 134 -15 1 1552 504 198 20 10 chr4 126859410 126859512 -28770608 - B1_Mur3 SINE Alu -24 125 23 1 1552 906 172 4 12 chr4 126859522 126859763 -28770357 + CT-rich Low_complexity Low_complexity 1 238 0 1 1552 404 167 256 0 chr4 126859776 126859856 -28770264 + B1_Mur2 SINE Alu 6 108 -41 1 1552 560 259 115 7 chr4 126859856 126860004 -28770116 + ID_B1 SINE B4 4 167 -57 1 1552 916 150 7 13 chr4 126860006 126860155 -28769965 + B1_Mur1 SINE Alu 2 149 0 1 1552 310 167 0 0 chr4 126860189 126860237 -28769883 + ID_B1 SINE B4 151 198 -26 1 1552 593 299 34 5 chr4 126860608 126860816 -28769304 + ID_B1 SINE B4 2 215 -9 1 1552 200 368 0 22 chr4 126861490 126861579 -28768541 - MIRb SINE MIR -89 179 93 1 1552 354 107 0 0 chr4 126861853 126861909 -28768211 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1552 378 309 137 29 chr4 126862867 126863197 -28766923 - L2a LINE L2 -18 3369 3026 1 1552 219 277 0 0 chr4 126864251 126864298 -28765822 - MIRm SINE MIR -152 124 78 1 1552 286 294 92 43 chr4 126864350 126864535 -28765585 - MIRb SINE MIR -22 246 53 1 1552 707 242 60 10 chr4 126865086 126865286 -28764834 + ID_B1 SINE B4 2 211 -13 1 1552 442 324 104 83 chr4 126865780 126866211 -28763909 - L2b LINE L2 -12 3363 2924 1 1552 319 297 73 88 chr4 126866579 126866771 -28763349 - MLT1J LTR MaLR -213 299 111 1 1552 667 224 0 0 chr4 126867012 126867137 -28762983 + ID_B1 SINE B4 79 203 -21 1 1552 251 230 133 33 chr4 126867282 126867372 -28762748 + PB1D10 SINE Alu 19 117 0 1 1552 230 262 122 24 chr4 126867384 126867466 -28762654 + B3A SINE B2 2 91 -107 1 1552 21 0 0 0 chr4 126867554 126867575 -28762545 + AT_rich Low_complexity Low_complexity 1 21 0 1 1552 891 129 7 0 chr4 126867648 126867788 -28762332 - B1_Mus1 SINE Alu -1 147 7 1 1552 494 274 0 44 chr4 126867859 126868019 -28762101 - RSINE1 SINE B4 -11 154 2 1 1552 562 279 7 0 chr4 126868299 126868439 -28761681 + ID_B1 SINE B4 82 222 -2 1 1552 669 256 92 5 chr4 126868446 126868642 -28761478 + B3 SINE B2 2 214 -2 1 1552 183 100 0 0 chr4 126868662 126868692 -28761428 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1552 205 297 0 0 chr4 126869106 126869170 -28760950 - L3b LINE CR1 -159 323 260 1 1552 225 293 57 57 chr4 126869185 126869344 -28760776 + L2 LINE L2 2462 2620 -799 1 1552 207 385 0 55 chr4 126869919 126870029 -28760091 + L2c LINE L2 3274 3377 -10 1 1552 309 51 0 0 chr4 126872518 126872557 -28757563 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1 1552 196 209 0 23 chr4 126873092 126873136 -28756984 + MIR SINE MIR 108 150 -58 1 1552 351 0 0 0 chr4 126873809 126873848 -28756272 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1 1552 232 295 148 59 chr4 126873862 126874165 -28755955 - L2c LINE L2 -54 3333 3004 1 1552 285 270 114 45 chr4 126874788 126874920 -28755200 - ID_B1 SINE B4 -3 221 81 1 1552 581 226 105 24 chr4 126875580 126875789 -28754331 - MIRb SINE MIR 0 268 43 1 1553 378 252 92 18 chr4 126878009 126878118 -28752002 + PB1D10 SINE Alu 1 117 0 1 1553 761 239 101 10 chr4 126878235 126878434 -28751686 + ID_B1 SINE B4 4 220 -4 1 1553 318 279 393 0 chr4 126878499 126878664 -28751456 + MIR SINE MIR 34 262 0 1 1553 697 312 141 5 chr4 126878831 126879208 -28750912 + L2 LINE L2 2011 2438 -981 1 1553 474 169 0 0 chr4 126879249 126879338 -28750782 + CT-rich Low_complexity Low_complexity 2 90 0 1 1553 234 317 37 28 chr4 126879338 126879445 -28750675 + L2 LINE L2 2463 2570 -849 1 1553 621 40 0 0 chr4 126879456 126879532 -28750588 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 1 1553 241 338 132 51 chr4 126879599 126880070 -28750050 + L2 LINE L2 2552 3060 -359 1 1553 529 133 0 20 chr4 126880110 126880126 -28749994 + polypyrimidine Low_complexity Low_complexity 87 101 0 1 1553 1152 119 0 0 chr4 126880126 126880303 -28749817 + (TCCCC)n Simple_repeat Simple_repeat 2 178 0 1 1553 529 133 0 20 chr4 126880303 126880386 -28749734 + CT-rich Low_complexity Low_complexity 4 86 0 1 1553 213 205 0 0 chr4 126880441 126880480 -28749640 + CT-rich Low_complexity Low_complexity 1 39 0 1 1553 404 285 161 1 chr4 126880627 126880837 -28749283 - L1MEd LINE L1 -3823 3183 2946 1 1553 534 269 7 27 chr4 126880851 126881000 -28749120 - RSINE1 SINE B4 -17 148 3 1 1553 525 262 14 7 chr4 126881046 126881192 -28748928 - B1F SINE Alu 0 149 3 1 1553 400 300 74 23 chr4 126881203 126881418 -28748702 - L1MEd LINE L1 -4086 2940 2715 1 1553 256 284 11 90 chr4 126881449 126881538 -28748582 + ID4_ SINE ID 1 82 -70 1 1553 514 294 34 14 chr4 126881914 126882062 -28748058 - RSINE1 SINE B4 -12 153 3 1 1553 844 188 0 0 chr4 126882117 126882261 -28747859 - B1_Mus1 SINE Alu -2 146 3 1 1553 1984 91 0 102 chr4 126882378 126882732 -28747388 - ORR1A3 LTR MaLR -8 318 1 1 1553 342 0 0 0 chr4 126882783 126882821 -28747299 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1 1553 337 109 0 40 chr4 126882837 126882904 -28747216 - B2_Mm2 SINE B2 -107 109 47 1 1553 1221 90 6 17 chr4 126882954 126883134 -28746986 - B2_Mm1t SINE B2 -13 180 3 1 1553 999 247 14 0 chr4 126883275 126883494 -28746626 - ID_B1 SINE B4 -1 223 2 1 1553 495 0 0 0 chr4 126883523 126883578 -28746542 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1553 297 0 0 0 chr4 126883579 126883612 -28746508 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1553 260 281 0 0 chr4 126884009 126884073 -28746047 - ID4_ SINE ID -19 64 1 1 1553 551 227 39 15 chr4 126884092 126884222 -28745898 + B1_Mur1 SINE Alu 12 144 -5 1 1553 332 278 119 0 chr4 126884224 126884350 -28745770 - B1F1 SINE Alu -5 144 4 1 1553 263 298 142 11 chr4 126884453 126884714 -28745406 - L1MEd LINE L1 -5080 1928 1634 1 1553 288 0 0 0 chr4 126884767 126884799 -28745321 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1553 492 271 13 38 chr4 126884801 126884958 -28745162 - RSINE1 SINE B4 -11 154 2 1 1553 376 297 72 103 chr4 126885001 126885196 -28744924 + B3A SINE B2 10 198 0 1 1553 398 260 246 14 chr4 126885376 126885587 -28744533 - L1MEd LINE L1 -5800 1534 1275 1 1553 1181 106 0 6 chr4 126885649 126885830 -28744290 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1553 817 60 17 0 chr4 126885830 126885946 -28744174 + (TCC)n Simple_repeat Simple_repeat 1 118 0 1 1553 438 321 0 70 chr4 126886240 126886411 -28743709 + RSINE1 SINE B4 1 159 -6 1 1553 519 193 26 9 chr4 126887184 126887299 -28742821 - ID_B1 SINE B4 -3 221 105 1 1553 283 309 12 0 chr4 126887363 126887447 -28742673 + PB1 SINE Alu 24 108 -19 1 1553 393 266 107 23 chr4 126887457 126887588 -28742532 + ID_B1 SINE B4 82 223 -1 1 1553 185 0 40 0 chr4 126887642 126887667 -28742453 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1553 466 317 110 24 chr4 126887793 126888039 -28742081 - MLT1F2 LTR MaLR 0 560 294 1 1553 239 321 0 0 chr4 126888149 126888205 -28741915 - L1MD3 LINE L1 -592 7403 7348 1 1553 186 43 0 0 chr4 126888548 126888571 -28741549 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 1553 647 302 26 52 chr4 126888593 126888900 -28741220 - L1MEd LINE L1 -5786 1210 912 1 1553 187 231 0 0 chr4 126889468 126889507 -28740613 - MIRm SINE MIR -14 262 224 1 1553 268 330 68 0 chr4 126890578 126890696 -28739424 - MIR SINE MIR -20 242 117 1 1553 276 241 52 26 chr4 126891042 126891157 -28738963 + PB1D7 SINE Alu 1 118 -2 1 1553 753 33 0 0 chr4 126892752 126892844 -28737276 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1553 771 257 12 79 chr4 126892934 126893175 -28736945 - B4 SINE B4 -62 230 6 1 1553 213 159 0 0 chr4 126893330 126893374 -28736746 + G-rich Low_complexity Low_complexity 1 44 0 1 1553 215 351 0 0 chr4 126894747 126894841 -28735279 + (ATAGG)n Simple_repeat Simple_repeat 3 96 0 1 1553 574 275 22 0 chr4 126895104 126895242 -28734878 - ID_B1 SINE B4 0 224 84 1 1553 479 314 65 23 chr4 126895416 126895573 -28734547 - L1MEg LINE L1 -1821 4325 4160 1 1553 480 283 7 42 chr4 126895573 126895717 -28734403 + B1_Mur1 SINE Alu 2 140 -9 1 1553 479 314 65 23 chr4 126895717 126895774 -28734346 - L1MEg LINE L1 -1987 4159 4102 1 1553 520 254 57 0 chr4 126895808 126895930 -28734190 - RSINE1 SINE B4 -35 130 2 1 1553 1092 209 24 0 chr4 126895939 126896150 -28733970 - B3 SINE B2 0 216 1 1 1553 408 247 0 0 chr4 126896288 126896375 -28733745 - ID4 SINE ID -60 92 6 1 1553 511 348 71 71 chr4 126896640 126897005 -28733115 - MLT1J LTR MaLR -139 373 9 1 1553 492 18 0 0 chr4 126897030 126897087 -28733033 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1553 360 252 71 0 chr4 126897131 126897230 -28732890 - PB1D10 SINE Alu -5 112 7 1 1553 574 330 90 83 chr4 126897234 126897649 -28732471 - L1MEg LINE L1 -2445 3701 3275 1 1553 1986 142 18 54 chr4 126897649 126898037 -28732083 - ORR1D1 LTR MaLR 0 374 1 1 1553 574 330 90 83 chr4 126898037 126898176 -28731944 - L1MEg LINE L1 -2872 3274 3144 1 1553 218 98 49 0 chr4 126898180 126898221 -28731899 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1 1553 211 271 34 0 chr4 126898275 126898334 -28731786 - B1F2 SINE Alu -88 61 1 1 1553 338 326 83 38 chr4 126898334 126898553 -28731567 - L1MEg LINE L1 -4031 2211 2000 1 1553 279 133 0 0 chr4 126898553 126898598 -28731522 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 1 1553 950 99 0 27 chr4 126898634 126898780 -28731340 - B1_Mur4 SINE Alu 0 150 9 1 1553 1091 109 0 90 chr4 126898935 126898966 -28731154 - B2_Mm2 SINE B2 -1 194 170 1 1553 984 80 7 0 chr4 126898966 126899103 -28731017 + B1_Mus1 SINE Alu 1 138 -10 1 1553 297 0 0 0 chr4 126899103 126899136 -28730984 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1553 1115 89 6 41 chr4 126899136 126899315 -28730805 - B2_Mm1t SINE B2 -22 171 2 1 1553 23 0 0 0 chr4 126899326 126899349 -28730771 + AT_rich Low_complexity Low_complexity 1 23 0 1 1553 1056 140 113 10 chr4 126899350 126899545 -28730575 - B3 SINE B2 0 216 2 1 1553 548 211 0 0 chr4 126899748 126899852 -28730268 + B1_Mur1 SINE Alu 41 144 -5 1 1553 24 0 0 0 chr4 126899922 126899946 -28730174 + AT_rich Low_complexity Low_complexity 1 24 0 1 1553 604 152 0 0 chr4 126899946 126900045 -28730075 + B1_Mur1 SINE Alu 43 141 -8 1 1553 251 271 14 0 chr4 126900195 126900265 -28729855 - PB1D10 SINE Alu -38 79 9 1 1553 2361 163 30 38 chr4 126901373 126901902 -28728218 - RLTR11A2 LTR ERVK -2 525 1 1 1553 216 0 0 0 chr4 126902484 126902508 -28727612 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1553 840 118 36 29 chr4 126902848 126902987 -28727133 - B1_Mur4 SINE Alu -10 140 1 1 1553 200 61 61 0 chr4 126903102 126903135 -28726985 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 1553 261 0 0 0 chr4 126903138 126903167 -28726953 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1553 369 0 0 0 chr4 126903181 126903222 -28726898 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1553 270 312 0 12 chr4 126903822 126903903 -28726217 - MLT1J LTR MaLR -9 503 424 1 1553 350 311 104 0 chr4 126903915 126904050 -28726070 - MLT1J LTR MaLR -135 377 229 1 1553 387 0 0 0 chr4 126904086 126904129 -28725991 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1553 430 297 25 0 chr4 126904129 126904247 -28725873 - RSINE1 SINE B4 -41 124 4 1 1553 266 173 0 19 chr4 126904281 126904334 -28725786 - ID4 SINE ID -30 53 2 1 1553 767 278 35 10 chr4 126904348 126904548 -28725572 - MLT1J LTR MaLR -303 209 5 1 1553 193 211 0 0 chr4 126905435 126905473 -28724647 + MIR SINE MIR 224 261 -1 1 1553 31 58 0 0 chr4 126905565 126905617 -28724503 + AT_rich Low_complexity Low_complexity 1 52 0 1 1553 399 320 8 0 chr4 126905656 126905781 -28724339 - MLT1D LTR MaLR -70 435 310 1 1553 298 284 0 69 chr4 126905794 126905881 -28724239 - ID4_ SINE ID -2 81 1 1 1553 696 227 74 0 chr4 126905986 126906149 -28723971 - MTEb LTR MaLR -11 368 194 1 1553 340 274 10 19 chr4 126906186 126906290 -28723830 - MTEb LTR MaLR -256 123 21 1 1553 413 299 51 0 chr4 126906302 126906419 -28723701 - MLT1D LTR MaLR -355 150 28 1 1553 680 146 331 0 chr4 126906419 126906570 -28723550 + B3 SINE B2 1 201 -15 1 1553 276 313 91 83 chr4 126906892 126906943 -28723177 - B3 SINE B2 0 195 10 1 1553 545 292 14 7 chr4 126906943 126907091 -28723029 - RSINE1 SINE B4 -6 159 11 1 1553 706 314 63 33 chr4 126907545 126907848 -28722272 - ORR1E LTR MaLR -39 320 9 1 1553 966 99 56 0 chr4 126907862 126908004 -28722116 + B1_Mur4 SINE Alu 1 150 0 1 1553 182 33 0 62 chr4 126908005 126908037 -28722083 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1553 1504 53 0 5 chr4 126908045 126908236 -28721884 + B2_Mm2 SINE B2 2 191 -4 1 1553 200 159 22 22 chr4 126908932 126908977 -28721143 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1 1553 438 173 3 13 chr4 126908983 126909088 -28721032 - PB1D9 SINE Alu -9 111 9 1 1553 243 206 137 32 chr4 126910086 126910181 -28719939 + MIRb SINE MIR 35 139 -129 1 1553 523 216 110 15 chr4 126910257 126910393 -28719727 + B1F SINE Alu 1 149 0 1 1553 226 346 9 45 chr4 126914885 126914997 -28715123 - MIRb SINE MIR -139 129 22 1 1553 246 62 0 0 chr4 126915207 126915239 -28714881 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1553 541 303 87 39 chr4 126915246 126915500 -28714620 - B4A SINE B4 -25 267 2 1 1553 704 160 38 0 chr4 126915527 126915658 -28714462 - B1_Mur3 SINE Alu 0 149 14 1 1553 779 211 40 93 chr4 126915665 126915890 -28714230 - B3 SINE B2 -3 213 1 1 1553 180 302 0 0 chr4 126915896 126915949 -28714171 + MER5A DNA MER1_type 132 184 -5 1 1553 1287 95 0 11 chr4 126915965 126916156 -28713964 - B2_Mm2 SINE B2 -6 189 1 1 1553 672 178 21 49 chr4 126916551 126916693 -28713427 + B1_Mur2 SINE Alu 12 149 0 1 1553 618 269 0 0 chr4 126916948 126917082 -28713038 + ID_B1 SINE B4 84 217 -7 1 1553 513 241 0 25 chr4 126917068 126917187 -28712933 - PB1D9 SINE Alu -2 118 3 1 1553 1045 70 0 0 chr4 126917202 126917344 -28712776 - B1_Mus1 SINE Alu 0 148 7 1 1553 243 0 0 0 chr4 126917391 126917418 -28712702 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1553 339 300 54 18 chr4 126917436 126917548 -28712572 + PB1 SINE Alu 1 116 -11 1 1553 989 209 19 5 chr4 126917568 126917775 -28712345 + B3 SINE B2 4 213 -3 1 1553 478 235 18 28 chr4 126917820 126917931 -28712189 + PB1D10 SINE Alu 1 109 -8 1 1553 977 163 136 0 chr4 126917931 126918115 -28712005 + B3 SINE B2 1 209 -7 1 1553 395 329 0 63 chr4 126918115 126918162 -28711958 + B1F1 SINE Alu 107 149 0 1 1553 211 157 196 0 chr4 126918192 126918243 -28711877 + ID_B1 SINE B4 97 157 -67 1 1553 735 247 6 0 chr4 126919134 126919296 -28710824 - RSINE1 SINE B4 0 165 3 1 1553 485 256 114 42 chr4 126919348 126919515 -28710605 + B3A SINE B2 11 189 -9 1 1553 364 278 105 7 chr4 126920563 126920715 -28709405 - MIRb SINE MIR -32 236 70 1 1553 23 33 0 0 chr4 126921030 126921060 -28709060 + GC_rich Low_complexity Low_complexity 1 30 0 1 1553 511 256 8 8 chr4 126922081 126922211 -28707909 + ID_B1 SINE B4 94 223 -1 1 1553 768 177 20 20 chr4 126922213 126922363 -28707757 + B1_Mur4 SINE Alu 1 150 0 1 1553 227 253 38 51 chr4 126922536 126922615 -28707505 + CR1_Mam LINE CR1 1535 1612 -592 1 1553 495 0 0 0 chr4 126923007 126923062 -28707058 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1553 276 315 0 43 chr4 126923131 126923224 -28706896 + MIRb SINE MIR 180 268 0 1 1553 282 29 0 0 chr4 126923388 126923423 -28706697 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1 1553 501 236 93 16 chr4 126925389 126925518 -28704602 - B1_Mur1 SINE Alu 0 149 11 1 1553 359 350 28 14 chr4 126925399 126925544 -28704576 - B4 SINE B4 -74 218 72 1 1553 213 227 23 0 chr4 126925640 126925684 -28704436 - ID4_ SINE ID -11 72 28 1 1553 393 257 9 19 chr4 126925718 126925825 -28704295 - PB1D10 SINE Alu -5 112 7 1 1553 370 226 0 23 chr4 126925749 126925835 -28704285 - ID_B1 SINE B4 -63 161 78 1 1553 1246 20 0 0 chr4 126925873 126926020 -28704100 - B1_Mm SINE Alu 0 147 1 1 1553 717 108 36 0 chr4 126926098 126926209 -28703911 - B3 SINE B2 -101 115 1 1 1553 522 0 0 0 chr4 126926226 126926284 -28703836 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 1553 531 256 17 96 chr4 126926286 126926463 -28703657 - RSINE1 SINE B4 0 165 3 1 1553 693 198 57 36 chr4 126926478 126926672 -28703448 - B3A SINE B2 0 198 1 1 1553 207 0 0 0 chr4 126927210 126927233 -28702887 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1553 519 230 45 51 chr4 126927681 126927837 -28702283 + ID_B1 SINE B4 3 157 -67 1 1553 318 270 17 91 chr4 126927837 126928012 -28702108 + RSINE1 SINE B4 4 165 0 1 1553 226 269 89 13 chr4 126928078 126928157 -28701963 + ID_B1 SINE B4 140 224 0 1 1553 683 301 0 0 chr4 126928178 126928341 -28701779 + RSINE1 SINE B4 3 165 0 1 1553 267 233 200 0 chr4 126928558 126928648 -28701472 + B1F SINE Alu 41 148 -1 1 1553 597 252 0 43 chr4 126929679 126929820 -28700300 - B4A SINE B4 -15 277 143 1 1553 217 321 98 63 chr4 126929916 126930059 -28700061 + MIR3 SINE MIR 7 154 -54 1 1553 1499 112 5 0 chr4 126930080 126930304 -28699816 - URR1A DNA MER1_type 0 226 2 1 1553 228 328 147 41 chr4 126930752 126930949 -28699171 - MamRep434 DNA TcMar -137 289 72 1 1553 2335 159 135 18 chr4 126931570 126932081 -28698039 - RMER4B LTR ERVK 0 585 15 1 1553 3328 153 51 217 chr4 126932086 126933186 -28696934 - RMER1B Other Other -105 961 45 1 1553 901 154 0 0 chr4 126933293 126933436 -28696684 - B1_Mur4 SINE Alu -6 144 2 1 1553 349 250 92 20 chr4 126934508 126934606 -28695514 + PB1D10 SINE Alu 1 105 -12 1 1553 428 174 11 0 chr4 126934610 126934702 -28695418 + CT-rich Low_complexity Low_complexity 1 93 0 1 1553 261 0 0 0 chr4 126934702 126934731 -28695389 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1553 793 142 7 43 chr4 126934735 126934875 -28695245 - B1_Mur4 SINE Alu -13 137 3 1 1553 891 144 11 17 chr4 126934884 126935061 -28695059 + GA-rich Low_complexity Low_complexity 4 179 0 1 1553 221 136 45 0 chr4 126935067 126935111 -28695009 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 1 1553 241 211 0 0 chr4 126935143 126935200 -28694920 + tRNA-Ala-GCA tRNA tRNA 2 58 -17 1 1553 227 336 125 8 chr4 126936099 126936219 -28693901 + MIR SINE MIR 31 164 -98 1 1553 331 279 67 9 chr4 126936573 126936678 -28693442 - MLT1B LTR MaLR -5 385 275 1 1553 420 20 0 0 chr4 126936689 126936738 -28693382 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1553 479 261 92 46 chr4 126936738 126936911 -28693209 - B3A SINE B2 -17 181 1 1 1553 231 261 0 0 chr4 126936957 126937003 -28693117 - PB1D7 SINE Alu -74 46 1 1 1553 277 258 201 16 chr4 126937026 126937141 -28692979 + ID_B1 SINE B4 77 213 -11 1 1553 192 77 0 0 chr4 126937141 126937167 -28692953 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1553 277 252 222 17 chr4 126937167 126937179 -28692941 + ID_B1 SINE B4 214 224 0 1 1553 459 125 0 0 chr4 126937179 126937251 -28692869 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1553 335 267 40 0 chr4 126937293 126937394 -28692726 + PB1D10 SINE Alu 13 117 0 1 1553 402 57 0 0 chr4 126937456 126937509 -28692611 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1553 22 35 0 0 chr4 126937509 126937538 -28692582 + AT_rich Low_complexity Low_complexity 1 29 0 1 1553 2237 132 83 10 chr4 126938088 126938485 -28691635 + RLTR19 LTR ERVK 74 499 0 1 1553 510 17 0 0 chr4 126938563 126938622 -28691498 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1553 493 198 0 0 chr4 126938650 126938736 -28691384 + B1_Mur1 SINE Alu 55 140 -9 1 1553 297 51 0 0 chr4 126938736 126938775 -28691345 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 1553 304 314 0 0 chr4 126938786 126938872 -28691248 + BC1_Mm scRNA scRNA 16 101 -51 1 1553 360 186 24 39 chr4 126940356 126940456 -28689664 - B1F SINE Alu -8 112 6 1 1553 202 182 0 0 chr4 126941112 126941145 -28688975 + C-rich Low_complexity Low_complexity 3 35 0 1 1553 249 299 113 0 chr4 126942121 126942218 -28687902 + MIRb SINE MIR 36 143 -125 1 1553 483 258 86 0 chr4 126942234 126942362 -28687758 - B1F SINE Alu 0 149 11 1 1553 2797 115 10 5 chr4 126942565 126942983 -28687137 - MTC LTR MaLR -1 420 1 1 1553 877 231 26 11 chr4 126943785 126943969 -28686151 + B3 SINE B2 3 176 -17 1 1553 918 213 55 20 chr4 126944471 126944672 -28685448 + B3 SINE B2 3 210 -6 1 1553 23 0 0 0 chr4 126944800 126944823 -28685297 + AT_rich Low_complexity Low_complexity 1 23 0 1 1553 885 243 6 0 chr4 126945105 126945278 -28684842 - B3 SINE B2 -8 208 35 1 1553 245 105 368 0 chr4 126945234 126945291 -28684829 - B4 SINE B4 -214 78 1 1 1553 736 225 10 76 chr4 126945384 126945581 -28684539 + B3A SINE B2 1 184 -14 1 1553 214 217 43 0 chr4 126945970 126946062 -28684058 + CT-rich Low_complexity Low_complexity 2 97 0 1 1553 498 200 22 39 chr4 126946080 126946405 -28683715 + CT-rich Low_complexity Low_complexity 1 319 0 1 1553 405 261 85 35 chr4 126946413 126946612 -28683508 - RLTR42-int LTR ERVK -4199 1323 1115 1 1553 864 193 50 20 chr4 126947204 126947405 -28682715 + B3 SINE B2 10 216 0 1 1553 265 300 0 0 chr4 126947718 126947788 -28682332 + PB1D9 SINE Alu 44 113 -7 1 1553 207 162 0 0 chr4 126948135 126948172 -28681948 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1 1553 704 246 106 5 chr4 126948748 126948936 -28681184 - B3 SINE B2 -6 210 4 1 1553 216 67 0 0 chr4 126948985 126949015 -28681105 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1553 1283 148 39 10 chr4 126949446 126949651 -28680469 - B3 SINE B2 -5 211 1 1 1553 30 0 0 0 chr4 126949714 126949744 -28680376 + AT_rich Low_complexity Low_complexity 1 30 0 1 1553 2325 95 9 0 chr4 126949846 126950162 -28679958 - ORR1A2 LTR MaLR -8 319 1 1 1553 414 0 0 0 chr4 126950222 126950268 -28679852 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1553 948 173 142 0 chr4 126950399 126950596 -28679524 - URR1A DNA MER1_type 0 226 2 1 1553 1341 57 0 0 chr4 126950637 126950990 -28679130 + (TCTA)n Simple_repeat Simple_repeat 1 353 0 1 1553 263 284 27 0 chr4 126952109 126952183 -28677937 - MER3 DNA MER1_type -98 111 36 1 1553 223 122 41 0 chr4 126952820 126952869 -28677251 + CT-rich Low_complexity Low_complexity 1 51 0 1 1553 1013 92 19 44 chr4 126953233 126953263 -28676857 + URR1B DNA MER1_type 68 96 -129 1 1553 1689 26 0 0 chr4 126953263 126953453 -28676667 - B2_Mm1a SINE B2 -2 191 2 1 1553 1013 92 19 44 chr4 126953453 126953581 -28676539 + URR1B DNA MER1_type 97 222 -3 1 1553 615 163 155 0 chr4 126953640 126953769 -28676351 - B1_Mur2 SINE Alu 0 149 1 1 1553 234 0 0 0 chr4 126953819 126953845 -28676275 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1553 292 355 74 57 chr4 126953845 126954015 -28676105 - LTR88a LTR Gypsy -424 392 218 1 1553 1127 72 0 0 chr4 126954993 126955131 -28674989 + B1_Mus1 SINE Alu 1 138 -10 1 1553 183 320 38 25 chr4 126956836 126956916 -28673204 - L2b LINE L2 -213 3162 3082 1 1553 549 178 11 34 chr4 126956987 126957162 -28672958 + (TATG)n Simple_repeat Simple_repeat 4 174 0 1 1553 539 228 34 117 chr4 126958576 126958755 -28671365 + ID_B1 SINE B4 8 171 -53 1 1553 188 311 235 0 chr4 126959225 126959344 -28670776 + MIRb SINE MIR 4 150 -118 1 1553 902 154 0 47 chr4 126959355 126959441 -28670679 + B1_Mur2 SINE Alu 5 90 -59 1 1553 2688 17 32 146 chr4 126959441 126959853 -28670267 - RLTR10B2 LTR ERVK 0 365 1 1 1553 902 154 0 47 chr4 126959853 126959916 -28670204 + B1_Mur2 SINE Alu 91 147 -2 1 1553 254 155 0 33 chr4 126960007 126960067 -28670053 + GA-rich Low_complexity Low_complexity 1 58 0 1 1553 525 273 0 32 chr4 126960166 126960291 -28669829 + RSINE1 SINE B4 5 125 -40 1 1553 1173 68 0 0 chr4 126960459 126960606 -28669514 - B1_Mus2 SINE Alu 0 147 1 1 1553 490 352 87 67 chr4 126961249 126961639 -28668481 - MLT1H LTR MaLR -140 409 12 1 1553 764 179 30 7 chr4 126961836 126961971 -28668149 - RSINE1 SINE B4 -3 162 25 1 1553 497 218 40 0 chr4 126961976 126962077 -28668043 - U6 snRNA snRNA -2 105 1 1 1553 669 236 8 8 chr4 126962706 126962834 -28667286 - ID_B1 SINE B4 -13 211 84 1 1553 712 248 15 3 chr4 126962894 126963044 -28667076 + B3A SINE B2 13 163 -53 1 1553 407 19 19 0 chr4 126963044 126963096 -28667024 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1553 645 279 34 57 chr4 126963096 126963123 -28666997 + B3 SINE B2 164 187 -29 1 1553 984 174 71 10 chr4 126963123 126963320 -28666800 + B3 SINE B2 4 212 -4 1 1553 645 279 34 57 chr4 126963320 126963350 -28666770 + B3 SINE B2 188 216 0 1 1553 1218 61 0 13 chr4 126963352 126963502 -28666618 + B1_Mus1 SINE Alu 1 148 0 1 1553 200 31 62 0 chr4 126963508 126963540 -28666580 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1553 296 293 53 0 chr4 126964614 126964689 -28665431 - ID4_ SINE ID 0 83 5 1 1553 431 284 8 45 chr4 126964696 126964829 -28665291 - B1F SINE Alu -16 132 5 1 1553 655 216 33 33 chr4 126964920 126965073 -28665047 - RSINE1 SINE B4 -12 153 1 1 1553 741 239 91 19 chr4 126965727 126965936 -28664184 + ID_B1 SINE B4 1 224 0 1 1553 202 275 172 21 chr4 126966012 126966105 -28664015 + MIRm SINE MIR 32 138 -138 1 1553 228 316 0 50 chr4 126967179 126967259 -28662861 + MIRc SINE MIR 63 138 -130 1 1553 462 236 9 36 chr4 126967467 126967577 -28662543 - ID_B1 SINE B4 0 224 118 1 1553 272 333 24 107 chr4 126967721 126967926 -28662194 - MIRb SINE MIR 0 268 81 1 1553 42 0 0 0 chr4 126967929 126967971 -28662149 + AT_rich Low_complexity Low_complexity 1 42 0 1 1553 1982 142 66 9 chr4 126967972 126968307 -28661813 - ORR1B1 LTR MaLR 0 394 41 1 1553 519 285 90 7 chr4 126968315 126968460 -28661660 - B3A SINE B2 -13 203 47 1 1553 1377 206 226 36 chr4 126968698 126969075 -28661045 + Lx9 LINE L1 7037 7476 -168 1 1553 387 60 0 0 chr4 126969075 126969125 -28660995 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1553 1377 206 226 36 chr4 126969125 126969251 -28660869 + Lx9 LINE L1 7477 7636 -8 1 1553 514 354 146 22 chr4 126969268 126969638 -28660482 - MLT1J2 LTR MaLR -32 416 1 1 1553 272 281 10 30 chr4 126969790 126969889 -28660231 - L1ME1 LINE L1 -214 6138 6042 1 1553 296 331 48 8 chr4 126970121 126970318 -28659802 - L1ME1 LINE L1 -1082 5237 5035 1 1553 360 0 0 0 chr4 126970400 126970440 -28659680 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1553 252 0 0 0 chr4 126970441 126970469 -28659651 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1553 189 0 0 0 chr4 126970583 126970604 -28659516 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1553 260 260 25 38 chr4 126970604 126970653 -28659467 - ID_B1 SINE B4 -11 213 164 1 1553 495 258 31 73 chr4 126970653 126970845 -28659275 - RLTR23 LTR ERV1 0 430 247 1 1553 289 296 96 57 chr4 126971175 126971508 -28658612 - L1ME1 LINE L1 -1515 4804 4459 1 1553 352 348 40 89 chr4 126971519 126971630 -28658490 + ID_B1 SINE B4 11 223 -1 1 1553 403 283 26 0 chr4 126971630 126971743 -28658377 + B1F SINE Alu 33 148 -1 1 1553 700 101 10 0 chr4 126971745 126971844 -28658276 - B1_Mus2 SINE Alu -46 101 2 1 1553 245 229 0 40 chr4 126971844 126971894 -28658226 + B1_Mur4 SINE Alu 13 60 -90 1 1553 753 235 11 0 chr4 126971896 126972247 -28657873 + (CAGG)n Simple_repeat Simple_repeat 1 355 0 1 1553 650 247 0 11 chr4 126972122 126972298 -28657822 + GA-rich Low_complexity Low_complexity 3 176 0 1 1553 247 222 36 100 chr4 126972298 126972408 -28657712 + RLTR25B LTR ERVK 397 499 -529 1 1553 725 149 0 0 chr4 126972348 126972455 -28657665 + B1_Mur2 SINE Alu 42 148 -1 1 1553 302 194 81 0 chr4 126972489 126972551 -28657569 + ID4_ SINE ID 3 69 -14 1 1553 270 217 0 42 chr4 126972608 126972680 -28657440 - L1MB8 LINE L1 -6 6172 6104 1 1553 21 71 0 0 chr4 126972725 126972767 -28657353 + AT_rich Low_complexity Low_complexity 1 42 0 1 1553 248 274 165 64 chr4 126972786 126972895 -28657225 - RSINE1 SINE B4 -2 163 44 1 1553 330 296 0 0 chr4 126973018 126973099 -28657021 - ID4 SINE ID -1 82 2 1 1553 2665 156 56 45 chr4 126973126 126973421 -28656699 - Lx5 LINE L1 -5 7045 6765 1 1553 2159 102 20 69 chr4 126973421 126973767 -28656353 - ORR1A4 LTR MaLR 0 329 1 1 1553 2665 156 56 45 chr4 126973767 126974021 -28656099 - Lx5 LINE L1 -286 6764 6490 1 1553 353 268 39 123 chr4 126974803 126974982 -28655138 - L1ME1 LINE L1 -5521 879 716 1 1553 804 245 24 14 chr4 126975059 126975266 -28654854 - B3 SINE B2 -6 210 2 1 1553 1046 242 142 38 chr4 126975270 126975390 -28654730 + MTD LTR MaLR 5 133 -286 1 1553 315 0 0 0 chr4 126975390 126975425 -28654695 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1553 1046 242 142 38 chr4 126975425 126975669 -28654451 + MTD LTR MaLR 134 407 -12 1 1553 231 232 0 0 chr4 126976048 126976104 -28654016 + CT-rich Low_complexity Low_complexity 3 58 0 1 1553 554 255 170 0 chr4 126976191 126976344 -28653776 - ID_B1 SINE B4 -31 193 15 1 1553 233 302 0 16 chr4 126976287 126976351 -28653769 - tRNA-Gly-GGY tRNA tRNA -10 64 2 1 1553 1657 218 75 3 chr4 126976633 126976982 -28653138 - ORR1D1 LTR MaLR 0 374 1 1 1553 331 312 25 51 chr4 126976982 126977069 -28653051 + RMER12 LTR ERVK 773 856 -466 1 1553 1086 204 23 36 chr4 126977152 126977371 -28652749 - B3 SINE B2 0 216 1 1 1553 374 162 14 42 chr4 126977704 126977775 -28652345 - ID4_ SINE ID -1 82 14 1 1553 302 282 129 0 chr4 126978123 126978208 -28651912 - PB1D10 SINE Alu -7 110 15 1 1553 1189 119 119 0 chr4 126978227 126978428 -28651692 + URR1A DNA MER1_type 2 226 0 1 1553 576 254 35 0 chr4 126978532 126978674 -28651446 + B1_Mur2 SINE Alu 2 148 -1 1 1553 396 223 116 103 chr4 126978701 126978856 -28651264 + ID_B1 SINE B4 68 224 0 1 1553 383 161 16 0 chr4 126978916 126978978 -28651142 + B1_Mur4 SINE Alu 30 92 -58 1 1553 1248 54 0 0 chr4 126979074 126979221 -28650899 - B1_Mm SINE Alu 0 147 1 1 1553 618 207 122 75 chr4 126980230 126980418 -28649702 - B3A SINE B2 0 198 2 1 1553 668 250 34 0 chr4 126980435 126980583 -28649537 + ID_B1 SINE B4 74 221 -3 1 1553 432 136 0 0 chr4 126980651 126980739 -28649381 + (CTGGGG)n Simple_repeat Simple_repeat 4 91 0 1 1553 1240 28 0 7 chr4 126980776 126980919 -28649201 - B1_Mm SINE Alu -5 142 1 1 1553 861 156 0 26 chr4 126981431 126981582 -28648538 - B1_Mur3 SINE Alu 0 149 3 1 1553 342 239 23 100 chr4 126981582 126981609 -28648511 - MT2B LTR ERVL -447 154 138 1 1553 333 243 0 14 chr4 126981614 126981685 -28648435 - ID4 SINE ID -13 70 1 1 1553 314 262 18 97 chr4 126981713 126981827 -28648293 + ID_B1 SINE B4 72 176 -48 1 1553 488 229 9 45 chr4 126981738 126981848 -28648272 + PB1D10 SINE Alu 12 117 0 1 1553 787 251 55 30 chr4 126981851 126982052 -28648068 + ID_B1 SINE B4 2 207 -17 1 1553 1185 35 14 14 chr4 126982075 126982221 -28647899 - B1_Mus2 SINE Alu 0 147 2 1 1553 401 219 0 30 chr4 126982230 126982329 -28647791 - PB1D10 SINE Alu -5 112 17 1 1553 532 238 85 31 chr4 126982532 126982662 -28647458 - ID_B1 SINE B4 -1 223 87 1 1553 319 180 0 0 chr4 126982722 126982772 -28647348 - B1_Mus1 SINE Alu -98 50 1 1 1553 333 0 0 0 chr4 126982798 126982835 -28647285 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1553 552 259 14 7 chr4 126983482 126983622 -28646498 + RSINE1 SINE B4 3 143 -22 1 1553 813 181 0 0 chr4 126983700 126983990 -28646130 + (CA)n Simple_repeat Simple_repeat 1 290 0 1 1553 225 169 0 0 chr4 126984006 126984065 -28646055 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1553 330 26 0 0 chr4 126984899 126984938 -28645182 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1553 201 39 0 0 chr4 126984947 126984973 -28645147 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1553 424 229 48 5 chr4 126984978 126985090 -28645030 - B3A SINE B2 -58 158 44 1 1553 551 225 54 0 chr4 126985070 126985181 -28644939 - B1_Mur1 SINE Alu -31 118 2 1 1553 183 182 30 0 chr4 126985677 126985710 -28644410 - MIRm SINE MIR -127 149 116 1 1553 546 314 152 51 chr4 126986020 126986173 -28643947 + MLT1C LTR MaLR 4 171 -296 1 1553 1200 122 0 0 chr4 126986173 126986520 -28643600 + (CA)n Simple_repeat Simple_repeat 1 347 0 1 1553 546 314 152 51 chr4 126986520 126986771 -28643349 + MLT1C LTR MaLR 172 448 -19 1 1553 194 74 0 0 chr4 126987292 126987319 -28642801 - L2c LINE L2 -224 3163 3137 1 1553 776 254 16 42 chr4 126987436 126987629 -28642491 - ID_B1 SINE B4 -34 190 3 1 1553 626 230 134 5 chr4 126987992 126988193 -28641927 + Lx4B LINE L1 6831 7057 -1 1 1553 199 200 0 0 chr4 126990445 126990480 -28639640 - MIR SINE MIR -146 116 82 1 1553 371 253 11 0 chr4 126992283 126992374 -28637746 + PB1D10 SINE Alu 24 115 -2 1 1553 229 306 0 115 chr4 126992374 126992470 -28637650 + ID_B1 SINE B4 68 152 -72 1 1553 526 258 56 83 chr4 126992476 126992692 -28637428 + ID_B1 SINE B4 1 210 -14 1 1553 472 140 21 0 chr4 126992716 126992809 -28637311 + GA-rich Low_complexity Low_complexity 2 96 0 1 1553 213 182 44 22 chr4 126992809 126992854 -28637266 + PB1 SINE Alu 75 120 -7 1 1553 188 282 39 90 chr4 126993825 126993903 -28636217 + L2b LINE L2 3108 3181 -194 1 1553 267 271 52 10 chr4 126993987 126994084 -28636036 - RMER12 LTR ERVK -483 839 739 1 1553 234 296 198 0 chr4 126994054 126994135 -28635985 + PB1D10 SINE Alu 11 107 -10 1 1553 1064 271 54 116 chr4 126994133 126994338 -28635782 - RMER5 LTR ERV1 -36 498 340 1 1553 773 114 267 7 chr4 126994338 126994488 -28635632 + B2_Mm2 SINE B2 2 190 -5 1 1553 1326 71 55 6 chr4 126994488 126994671 -28635449 + B2_Mm2 SINE B2 2 193 -2 1 1553 1064 271 54 116 chr4 126994671 126994945 -28635175 - RMER5 LTR ERV1 -195 339 49 1 1553 270 0 0 0 chr4 126994999 126995029 -28635091 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1553 496 341 88 73 chr4 126995263 126995731 -28634389 - L2a LINE L2 -8 3418 2944 1 1553 245 275 96 51 chr4 126996124 126996255 -28633865 - MLT1A0 LTR MaLR -15 375 239 1 1553 245 282 0 40 chr4 126996303 126996377 -28633743 + CT-rich Low_complexity Low_complexity 2 72 0 1 1553 887 214 27 6 chr4 126996383 126996566 -28633554 - ID_B1 SINE B4 -22 202 16 1 1553 254 254 14 27 chr4 126996501 126996574 -28633546 - B3A SINE B2 -119 79 8 1 1553 423 275 64 0 chr4 126996601 126996710 -28633410 - PB1D10 SINE Alu -1 116 1 1 1553 543 170 118 124 chr4 126996716 126996877 -28633243 - MLT1A0 LTR MaLR -211 163 4 1 1553 5281 156 79 22 chr4 126997205 126998328 -28631792 - MERVL_2A-int LTR ERVL -4004 1757 430 1 1553 956 244 57 28 chr4 126998337 126998372 -28631748 + ID SINE ID 1 41 -183 1 1553 1915 162 32 72 chr4 126998372 126998772 -28631348 - ORR1C2 LTR MaLR 0 384 1 1 1553 956 244 57 28 chr4 126998772 126998947 -28631173 + ID_B1 SINE B4 42 217 -7 1 1553 1263 48 0 0 chr4 126998955 126999101 -28631019 + B1_Mus1 SINE Alu 1 146 -2 1 1553 657 199 12 37 chr4 126999267 126999429 -28630691 - Lx7 LINE L1 -350 7346 7189 1 1553 408 286 101 35 chr4 126999431 126999630 -28630490 + Lx7 LINE L1 6936 7147 -549 1 1553 1783 121 28 7 chr4 126999705 126999989 -28630131 - Lx4A LINE L1 -7 7051 6762 1 1553 261 0 0 0 chr4 127000000 127000029 -28630091 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1553 3717 124 15 3 chr4 127000029 127000725 -28629395 + Lx4A LINE L1 5299 6009 -1049 2 1553 249 105 0 0 chr4 127000768 127000806 -28629314 + B3A SINE B2 3 40 -158 3 1553 200 204 20 0 chr4 127000847 127000896 -28629224 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1553 195 42 0 0 chr4 127001195 127001219 -28628901 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 5 1553 330 292 0 0 chr4 127001219 127001308 -28628812 + LTR33 LTR ERVL 58 146 -369 6 1553 566 275 150 17 chr4 127001420 127001653 -28628467 - MTE2b LTR MaLR -59 320 57 7 1553 741 207 0 0 chr4 127004136 127004271 -28625849 + B1_Mur2 SINE Alu 15 149 0 8 1553 1099 72 7 0 chr4 127004285 127004424 -28625696 + B1_Mus1 SINE Alu 1 140 -8 9 1553 368 0 43 0 chr4 127004427 127004474 -28625646 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1553 219 69 0 0 chr4 127004592 127004621 -28625499 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 1553 184 305 127 67 chr4 127004685 127004850 -28625270 - MIRb SINE MIR -21 247 73 1 1553 658 291 111 0 chr4 127004995 127005194 -28624926 - ID_B1 SINE B4 -1 223 3 1 1553 1032 194 28 24 chr4 127005322 127005533 -28624587 - B3 SINE B2 0 216 5 1 1553 1341 91 38 0 chr4 127006044 127006230 -28623890 + B2_Mm1a SINE B2 1 193 0 1 1553 195 42 0 0 chr4 127007456 127007480 -28622640 + (CG)n Simple_repeat Simple_repeat 1 24 0 1 1553 249 323 86 39 chr4 127007868 127008119 -28622001 + MIRc SINE MIR 4 257 -11 1 1554 216 0 0 0 chr4 127009020 127009044 -28621076 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1554 403 319 91 0 chr4 127009148 127009358 -28620762 + L2 LINE L2 1907 2135 -1284 1 1554 339 121 0 0 chr4 127009966 127010024 -28620096 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1554 189 0 0 0 chr4 127010024 127010045 -28620075 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1554 503 263 58 74 chr4 127010113 127010302 -28619818 - B4A SINE B4 -104 188 3 2 1554 230 293 154 8 chr4 127010361 127010478 -28619642 - L1MC LINE L1 -2287 5595 5462 2 1554 291 181 122 27 chr4 127010728 127010802 -28619318 - Lx7 LINE L1 0 7696 7616 2 1554 456 104 0 0 chr4 127010855 127010922 -28619198 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1554 265 177 0 31 chr4 127010922 127010986 -28619134 - Lx7 LINE L1 -386 7310 7249 2 1554 395 183 36 55 chr4 127011664 127011774 -28618346 - PB1D7 SINE Alu -4 116 1 2 1554 423 160 0 0 chr4 127012719 127012794 -28617326 + T-rich Low_complexity Low_complexity 3 77 0 2 1554 719 231 7 33 chr4 127012800 127012952 -28617168 - B1_Mur1 SINE Alu 0 149 2 2 1554 484 261 0 43 chr4 127012974 127013090 -28617030 - PB1D10 SINE Alu -2 115 5 2 1554 559 208 2 87 chr4 127013185 127013341 -28616779 - B3A SINE B2 -12 204 60 3 1554 240 234 15 45 chr4 127013422 127013489 -28616631 + PB1D10 SINE Alu 53 117 0 3 1554 256 336 62 8 chr4 127013498 127013627 -28616493 + L2 LINE L2 2324 2459 -960 1 1554 714 248 0 7 chr4 127013636 127013786 -28616334 - B1_Mur2 SINE Alu 0 149 1 3 1554 227 317 93 80 chr4 127013786 127013831 -28616289 - MT2B2 LTR ERVL -432 152 106 3 1554 360 271 10 10 chr4 127013911 127014008 -28616112 + B4A SINE B4 1 97 -195 3 1554 709 311 14 37 chr4 127014301 127014595 -28615525 + L1MB4 LINE L1 5514 5800 -374 3 1554 416 0 0 59 chr4 127014602 127014670 -28615450 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1554 1409 93 0 15 chr4 127014680 127014877 -28615243 + B2_Mm2 SINE B2 1 194 -1 3 1554 456 232 0 0 chr4 127014883 127014978 -28615142 - B1F SINE Alu -46 103 9 3 1554 224 295 78 35 chr4 127014978 127014999 -28615121 - B4 SINE B4 -100 192 72 3 1554 431 357 18 0 chr4 127015013 127015240 -28614880 + L1MB4 LINE L1 5815 6045 -135 3 1554 1153 124 32 5 chr4 127015325 127015511 -28614609 - B2_Mm2 SINE B2 -4 191 1 4 1554 1614 41 0 15 chr4 127015572 127015769 -28614351 + B2_Mm2 SINE B2 2 195 0 4 1554 300 104 45 0 chr4 127016004 127016071 -28614049 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1554 254 268 218 85 chr4 127016072 127016260 -28613860 - B4 SINE B4 0 292 80 4 1554 759 236 15 35 chr4 127016273 127016475 -28613645 - B3A SINE B2 0 198 1 4 1554 26 30 0 0 chr4 127016483 127016516 -28613604 + AT_rich Low_complexity Low_complexity 1 33 0 4 1554 2280 329 71 37 chr4 127016558 127017723 -28612397 - Lx8 LINE L1 -21 7452 6248 4 1554 347 258 32 11 chr4 127017728 127017822 -28612298 - B4A SINE B4 -196 96 1 4 1554 956 244 9 18 chr4 127017824 127018041 -28612079 - ID_B1 SINE B4 -7 217 3 4 1554 279 79 0 0 chr4 127018072 127018110 -28612010 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4 1554 747 230 6 29 chr4 127018134 127018304 -28611816 - B3A SINE B2 -32 166 1 4 1554 435 119 0 0 chr4 127020533 127020600 -28609520 + (TTA)n Simple_repeat Simple_repeat 3 69 0 5 1554 494 291 49 14 chr4 127020604 127020747 -28609373 - RSINE1 SINE B4 -15 150 3 5 1554 807 173 149 11 chr4 127020842 127021023 -28609097 - B3 SINE B2 -1 215 10 5 1554 226 280 72 96 chr4 127021118 127021159 -28608961 - B3 SINE B2 -6 210 7 5 1554 452 245 152 28 chr4 127021159 127021327 -28608793 - B4 SINE B4 -2 163 7 5 1554 22 0 0 0 chr4 127021362 127021384 -28608736 + AT_rich Low_complexity Low_complexity 1 22 0 5 1554 343 287 27 18 chr4 127021384 127021494 -28608626 - PB1D10 SINE Alu -5 112 2 5 1554 1023 305 65 48 chr4 127021504 127021617 -28608503 - Kanga2_a DNA Tc2 -394 494 394 5 1554 1187 88 0 0 chr4 127021617 127021765 -28608355 - B1_Mus1 SINE Alu 0 148 1 5 1554 1023 305 65 48 chr4 127021765 127022130 -28607990 - Kanga2_a DNA Tc2 -495 393 9 5 1554 246 22 87 0 chr4 127022673 127022719 -28607401 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1554 262 264 87 11 chr4 127022765 127022857 -28607263 - PB1D10 SINE Alu -18 99 1 6 1554 502 204 161 42 chr4 127022857 127022925 -28607195 - ID SINE ID -138 86 2 6 1554 752 254 174 4 chr4 127023260 127023501 -28606619 - B4A SINE B4 -6 286 5 6 1554 286 337 184 38 chr4 127024935 127025441 -28604679 + L2 LINE L2 2420 2999 -420 6 1554 203 275 187 24 chr4 127027024 127027246 -28602874 - L2c LINE L2 0 3387 3098 6 1554 423 0 0 0 chr4 127027831 127027878 -28602242 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1554 262 259 124 42 chr4 127029576 127029723 -28600397 - MIRc SINE MIR -99 163 20 6 1554 715 183 0 11 chr4 127030187 127030369 -28599751 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1554 852 173 12 8 chr4 127030383 127030629 -28599491 + (TG)n Simple_repeat Simple_repeat 1 247 0 6 1554 251 354 54 0 chr4 127032525 127032655 -28597465 - MIRb SINE MIR -82 186 50 6 1554 328 293 82 8 chr4 127033698 127033832 -28596288 - MIR SINE MIR -101 161 18 6 1554 336 194 0 0 chr4 127034689 127034751 -28595369 - MIR SINE MIR -173 89 28 7 1554 231 268 0 18 chr4 127035717 127035774 -28594346 + C-rich Low_complexity Low_complexity 5 60 0 7 1554 251 246 0 0 chr4 127035902 127035959 -28594161 - PB1D10 SINE Alu -32 85 29 7 1554 586 222 69 23 chr4 127035987 127036162 -28593958 + MER82 DNA MER2_type 249 431 -222 7 1554 655 268 53 5 chr4 127036167 127036373 -28593747 + ID_B1 SINE B4 8 223 -1 7 1554 183 42 0 0 chr4 127037747 127037771 -28592349 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1554 240 354 26 34 chr4 127038059 127038176 -28591944 - PB1D10 SINE Alu 0 117 2 7 1554 246 267 101 51 chr4 127038349 127038487 -28591633 + L2b LINE L2 3230 3374 -1 7 1554 26 0 0 0 chr4 127038657 127038683 -28591437 + AT_rich Low_complexity Low_complexity 1 26 0 7 1554 657 275 144 14 chr4 127038683 127038960 -28591160 + Lx8 LINE L1 7160 7472 -1 7 1554 30 27 0 0 chr4 127038960 127038997 -28591123 + AT_rich Low_complexity Low_complexity 1 37 0 8 1554 348 322 103 20 chr4 127039000 127039028 -28591092 - RSINE1 SINE B4 -4 161 126 8 1554 387 0 0 0 chr4 127039028 127039071 -28591049 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1554 348 322 103 20 chr4 127039071 127039188 -28590932 - RSINE1 SINE B4 -40 125 5 8 1554 327 288 90 0 chr4 127039196 127039307 -28590813 + MIR SINE MIR 89 209 -53 8 1554 1218 68 0 0 chr4 127039445 127039592 -28590528 + B1_Mus1 SINE Alu 2 148 0 8 1554 522 269 0 16 chr4 127040335 127040456 -28589664 - ID_B1 SINE B4 -7 217 99 8 1554 269 367 104 34 chr4 127040683 127040951 -28589169 + LTR16E1 LTR ERVL 251 537 -1 8 1554 335 310 19 21 chr4 127041649 127041836 -28588284 - MLT1A1 LTR MaLR -14 394 167 8 1554 271 320 69 55 chr4 127042302 127042536 -28587584 + MER102c DNA MER1_type 66 329 -2 8 1554 240 281 0 0 chr4 127043503 127043560 -28586560 - MIRm SINE MIR -140 136 80 8 1554 227 280 0 15 chr4 127043762 127043842 -28586278 - MIRc SINE MIR -123 145 64 9 1554 305 314 86 17 chr4 127044176 127044351 -28585769 - ORSL DNA Tip100 -69 206 20 9 1554 444 19 0 0 chr4 127044447 127044500 -28585620 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1554 736 264 98 0 chr4 127044648 127044841 -28585279 + ID_B1 SINE B4 5 216 -8 9 1554 654 55 0 0 chr4 127044987 127045078 -28585042 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1554 22 0 0 0 chr4 127045082 127045104 -28585016 + AT_rich Low_complexity Low_complexity 1 22 0 9 1554 236 286 72 48 chr4 127045221 127045346 -28584774 + L2a LINE L2 3279 3406 -20 9 1554 399 343 13 70 chr4 127046730 127047031 -28583089 + L2b LINE L2 3081 3364 -11 9 1554 389 274 10 0 chr4 127047243 127047345 -28582775 + Charlie16a DNA MER1_type 133 235 -107 9 1554 217 217 63 48 chr4 127047391 127047454 -28582666 - MER5A DNA MER1_type -47 142 79 9 1554 597 305 37 75 chr4 127047545 127047786 -28582334 + B4A SINE B4 2 233 -59 1 1554 889 205 79 0 chr4 127047789 127047979 -28582141 + B3 SINE B2 8 212 -4 1 1554 344 181 0 40 chr4 127047998 127048073 -28582047 + B4A SINE B4 217 288 -4 1 1554 741 142 0 0 chr4 127048096 127048251 -28581869 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1554 237 280 13 13 chr4 127048585 127048661 -28581459 + MIRm SINE MIR 52 127 -149 1 1554 555 263 70 6 chr4 127048696 127048853 -28581267 + RMER30 DNA MER1_type 2 168 -34 1 1554 291 234 0 0 chr4 127049375 127049452 -28580668 + (TATG)n Simple_repeat Simple_repeat 1 77 0 1 1554 461 304 113 60 chr4 127049462 127049728 -28580392 + B4 SINE B4 2 281 -11 1 1554 378 0 0 0 chr4 127049765 127049807 -28580313 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1554 251 318 146 0 chr4 127049837 127049947 -28580173 - MTEa LTR MaLR -1 378 253 1 1554 375 335 67 18 chr4 127050879 127051094 -28579026 - MIR SINE MIR -2 266 43 1 1554 887 175 0 0 chr4 127051295 127051438 -28578682 - B1_Mus2 SINE Alu 0 147 5 1 1554 1041 207 0 58 chr4 127051458 127051684 -28578436 - B3 SINE B2 -3 213 1 1 1554 454 200 43 17 chr4 127051691 127051808 -28578312 - B1F2 SINE Alu -22 127 8 1 1554 280 322 11 0 chr4 127051829 127051916 -28578204 - ID_B1 SINE B4 -57 167 80 1 1554 204 40 0 0 chr4 127051934 127051959 -28578161 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1 1554 595 218 134 6 chr4 127051981 127052138 -28577982 + B3A SINE B2 12 188 -10 1 1554 496 314 7 7 chr4 127052197 127052338 -28577782 + B3A SINE B2 12 152 -46 1 1554 369 294 95 0 chr4 127052382 127052508 -28577612 - B1_Mur1 SINE Alu 0 149 12 1 1554 654 228 194 1 chr4 127053659 127053851 -28576269 + B4 SINE B4 4 234 -58 1 1554 475 306 8 8 chr4 127053851 127053973 -28576147 + RSINE1 SINE B4 3 124 -41 1 1554 368 197 0 0 chr4 127054033 127054099 -28576021 + B4 SINE B4 219 284 -8 1 1554 369 0 0 0 chr4 127054107 127054148 -28575972 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1554 247 303 15 0 chr4 127054382 127054448 -28575672 + MIR SINE MIR 28 94 -168 1 1554 662 264 78 54 chr4 127054697 127054901 -28575219 - B3 SINE B2 -5 211 3 1 1554 689 43 98 0 chr4 127054944 127055108 -28575012 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1554 225 0 0 0 chr4 127055400 127055425 -28574695 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 1554 876 20 0 0 chr4 127055425 127055527 -28574593 + (TTC)n Simple_repeat Simple_repeat 1 102 0 1 1554 207 205 0 0 chr4 127055583 127055622 -28574498 + L2a LINE L2 3384 3422 -4 1 1554 202 296 198 19 chr4 127055882 127056089 -28574031 + L2b LINE L2 2744 2987 -432 1 1554 519 317 200 32 chr4 127056148 127056574 -28573546 + MLT1G1 LTR MaLR 62 578 -17 1 1554 202 246 40 40 chr4 127056931 127057007 -28573113 + L2b LINE L2 3276 3351 -24 1 1554 438 240 191 19 chr4 127057051 127057208 -28572912 - MLT1D LTR MaLR -4 501 318 1 1554 23 0 0 0 chr4 127057208 127057231 -28572889 + AT_rich Low_complexity Low_complexity 1 23 0 1 1554 1319 14 0 0 chr4 127057235 127057382 -28572738 - B1_Mm SINE Alu 0 147 1 1 1554 642 258 71 62 chr4 127057515 127057805 -28572315 + B4 SINE B4 7 292 0 1 1554 3224 36 36 5 chr4 127058102 127058490 -28571630 + MTB LTR MaLR 1 400 0 1 1554 536 58 0 0 chr4 127058571 127058640 -28571480 + B1_Mus2 SINE Alu 72 140 -7 1 1554 294 229 0 0 chr4 127058644 127058714 -28571406 + (CAAA)n Simple_repeat Simple_repeat 1 70 0 1 1554 279 344 81 56 chr4 127059066 127059263 -28570857 - MIR SINE MIR -29 233 32 1 1554 194 275 238 0 chr4 127059718 127059798 -28570322 - MIR SINE MIR -48 214 116 1 1554 264 301 9 55 chr4 127060117 127060226 -28569894 - L2b LINE L2 -19 3356 3253 1 1554 720 279 46 0 chr4 127060226 127060423 -28569697 + MER3 DNA MER1_type 1 206 -3 1 1554 339 25 0 0 chr4 127061438 127061478 -28568642 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1554 623 213 7 72 chr4 127062486 127062638 -28567482 - B1_Mur1 SINE Alu -6 143 2 1 1554 411 348 48 12 chr4 127062639 127062805 -28567315 + MIR SINE MIR 75 246 -16 1 1554 301 369 93 14 chr4 127062973 127063264 -28566856 - L1MC4a LINE L1 -2000 5882 5569 1 1554 209 146 21 0 chr4 127063590 127063638 -28566482 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1554 228 309 23 75 chr4 127064207 127064340 -28565780 - MER5B DNA MER1_type -6 172 47 1 1554 193 393 70 21 chr4 127064444 127064587 -28565533 + MIRb SINE MIR 95 244 -24 1 1554 296 247 32 53 chr4 127065577 127065671 -28564449 + MER117 DNA MER1_type 56 147 -50 1 1554 246 105 0 0 chr4 127065767 127065805 -28564315 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1554 948 276 11 41 chr4 127065884 127066119 -28564001 + B4A SINE B4 1 229 -63 1 1554 1477 233 39 95 chr4 127066119 127066654 -28563466 + RLTR16 LTR ERVK 1 505 0 1 1554 948 276 11 41 chr4 127066654 127066686 -28563434 + B4A SINE B4 230 260 -32 1 1554 262 328 23 0 chr4 127067110 127067238 -28562882 - L1M5 LINE L1 -763 5383 5253 1 1554 300 301 38 3 chr4 127067280 127067374 -28562746 - B1F SINE Alu -21 96 1 1 1554 803 106 28 0 chr4 127067765 127067907 -28562213 + (TC)n Simple_repeat Simple_repeat 1 146 0 1 1554 285 238 83 28 chr4 127068063 127068171 -28561949 - MER113A DNA MER1_type -152 162 49 1 1554 783 233 0 0 chr4 127068482 127068615 -28561505 + B1F SINE Alu 13 145 -4 1 1554 216 67 0 0 chr4 127068617 127068647 -28561473 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1554 1914 157 84 6 chr4 127068734 127069079 -28561041 + ORR1D1 LTR MaLR 3 374 0 1 1554 934 233 14 23 chr4 127069499 127069714 -28560406 - ID_B1 SINE B4 -10 214 2 1 1554 454 234 118 78 chr4 127069768 127069921 -28560199 - RSINE1 SINE B4 -5 160 2 1 1554 402 264 96 38 chr4 127070011 127070204 -28559916 - L1M5 LINE L1 -557 5683 5480 1 1554 324 0 0 0 chr4 127070204 127070240 -28559880 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1554 402 264 96 38 chr4 127070240 127070255 -28559865 - L1M5 LINE L1 -761 5479 5463 1 1554 301 281 104 18 chr4 127070260 127070316 -28559804 - Lx8 LINE L1 -1 7472 7416 1 1554 1263 140 0 20 chr4 127070316 127070338 -28559782 - B2_Mm2 SINE B2 -2 193 176 1 1554 261 0 0 0 chr4 127070338 127070367 -28559753 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1554 1263 140 0 20 chr4 127070367 127070541 -28559579 - B2_Mm2 SINE B2 -20 175 2 1 1554 301 281 104 18 chr4 127070541 127070647 -28559473 - Lx8 LINE L1 -58 7415 7297 1 1554 332 265 162 81 chr4 127070709 127070857 -28559263 - RSINE1 SINE B4 0 165 6 1 1554 23 0 0 0 chr4 127070992 127071015 -28559105 + AT_rich Low_complexity Low_complexity 1 23 0 1 1554 554 292 27 0 chr4 127071082 127071229 -28558891 - RSINE1 SINE B4 -10 155 5 1 1554 700 161 0 16 chr4 127071774 127071817 -28558303 + polypurine Low_complexity Low_complexity 1 43 0 1 1554 429 20 0 0 chr4 127071817 127071867 -28558253 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1554 700 161 0 16 chr4 127071867 127072006 -28558114 + GA-rich Low_complexity Low_complexity 44 180 0 1 1554 903 286 82 43 chr4 127073795 127074076 -28556044 + B4A SINE B4 1 292 0 1 1554 180 0 0 0 chr4 127074120 127074140 -28555980 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1554 450 0 0 0 chr4 127074140 127074189 -28555931 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1554 411 145 0 0 chr4 127074189 127074258 -28555862 + (GGA)n Simple_repeat Simple_repeat 3 71 0 1 1554 432 263 50 25 chr4 127074654 127074814 -28555306 - ALINE LINE RTE -450 167 4 1 1554 778 272 53 60 chr4 127075104 127075389 -28554731 - ORR1E LTR MaLR -4 355 73 1 1554 384 296 153 46 chr4 127075484 127075700 -28554420 - MLT1A0 LTR MaLR -123 242 4 1 1554 488 218 0 8 chr4 127075715 127075849 -28554271 + GA-rich Low_complexity Low_complexity 3 135 0 1 1554 181 216 101 169 chr4 127075885 127075974 -28554146 + MIRc SINE MIR 41 123 -145 1 1554 192 329 73 57 chr4 127076472 127076649 -28553471 + L2c LINE L2 3038 3217 -170 1 1554 275 268 48 12 chr4 127076662 127076745 -28553375 - MIRc SINE MIR -157 111 26 1 1554 345 250 13 13 chr4 127077113 127077190 -28552930 - ID2 SINE ID -6 77 1 1 1554 266 280 0 0 chr4 127077203 127077278 -28552842 - PB1D10 SINE Alu 0 117 43 1 1554 234 0 0 0 chr4 127078837 127078863 -28551257 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1554 324 0 0 0 chr4 127078863 127078898 -28551222 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1554 380 149 104 0 chr4 127080005 127080072 -28550048 + MLT1J1 LTR MaLR 63 136 -308 1 1554 973 87 7 7 chr4 127080352 127080503 -28549617 + (TG)n Simple_repeat Simple_repeat 2 152 0 1 1554 225 239 246 41 chr4 127080565 127080578 -28549542 - B1F2 SINE Alu 0 149 139 1 1554 1296 34 0 0 chr4 127080578 127080724 -28549396 - B1_Mm SINE Alu 0 147 2 1 1554 234 0 0 0 chr4 127080724 127080750 -28549370 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1554 310 262 0 0 chr4 127080754 127080815 -28549305 - B4A SINE B4 -79 213 153 1 1554 225 239 246 41 chr4 127080815 127080857 -28549263 - B1F2 SINE Alu -11 134 4 1 1554 263 234 94 0 chr4 127080857 127080902 -28549218 - B4A SINE B4 -233 59 9 1 1554 453 287 0 9 chr4 127080961 127081070 -28549050 - ID_B1 SINE B4 -2 222 115 1 1554 187 309 12 36 chr4 127081300 127081384 -28548736 - L2 LINE L2 -1322 2097 2016 1 1554 1250 221 83 40 chr4 127081844 127082241 -28547879 - Lx8 LINE L1 -96 7377 6964 1 1554 237 294 70 52 chr4 127082324 127082496 -28547624 + MLT1J LTR MaLR 240 414 -98 1 1554 1726 128 11 78 chr4 127082488 127082794 -28547326 - ORR1A2 LTR MaLR -102 268 1 1 1554 205 88 29 0 chr4 127083166 127083200 -28546920 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1554 238 300 141 60 chr4 127083289 127083337 -28546783 - MLT1L LTR MaLR -23 587 528 1 1554 255 296 0 47 chr4 127083337 127083422 -28546698 + ID4_ SINE ID 1 81 -2 2 1554 238 300 141 60 chr4 127083422 127083522 -28546598 - MLT1L LTR MaLR -83 527 427 1 1554 202 346 164 26 chr4 127083891 127084307 -28545813 + L2 LINE L2 2426 2898 -521 2 1554 1057 205 0 31 chr4 127084858 127084964 -28545156 + B3 SINE B2 5 109 -107 2 1554 3424 68 19 91 chr4 127084964 127085483 -28544637 + RLTR45 LTR ERVK 1 482 0 2 1554 1057 205 0 31 chr4 127085483 127085572 -28544548 + B3 SINE B2 110 194 -22 2 1554 24 77 0 0 chr4 127086082 127086134 -28543986 + AT_rich Low_complexity Low_complexity 1 52 0 2 1554 234 0 0 0 chr4 127086210 127086236 -28543884 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1554 900 147 66 13 chr4 127086245 127086397 -28543723 - B3A SINE B2 -38 160 1 2 1554 582 218 44 19 chr4 127086403 127086562 -28543558 + MER33 DNA MER1_type 157 319 -5 2 1554 375 121 0 0 chr4 127088009 127088067 -28542053 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1554 554 269 131 66 chr4 127088078 127088352 -28541768 - B4A SINE B4 0 292 1 2 1554 405 0 0 0 chr4 127088602 127088647 -28541473 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1554 550 283 10 67 chr4 127088683 127088876 -28541244 + B3A SINE B2 1 182 -16 2 1554 425 172 0 11 chr4 127088879 127088973 -28541147 + (CATA)n Simple_repeat Simple_repeat 2 94 0 2 1554 195 69 0 0 chr4 127089052 127089081 -28541039 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1554 1301 34 0 0 chr4 127089083 127089231 -28540889 - B1_Mus1 SINE Alu 0 148 1 2 1554 874 281 16 49 chr4 127089388 127089635 -28540485 + B4 SINE B4 54 292 0 2 1554 207 69 0 0 chr4 127089693 127089722 -28540398 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1554 597 205 133 8 chr4 127089847 127089975 -28540145 - B1F SINE Alu -5 144 1 2 1554 402 344 93 27 chr4 127090029 127090361 -28539759 - ORR1E LTR MaLR -2 357 4 2 1554 336 308 17 0 chr4 127090607 127090722 -28539398 - Lx8 LINE L1 -202 7271 7155 2 1554 1960 148 30 69 chr4 127090722 127091115 -28539005 - ORR1C1 LTR MaLR 0 378 1 2 1554 719 317 79 88 chr4 127091375 127091831 -28538289 - L3 LINE CR1 -640 3849 3398 2 1554 302 376 50 44 chr4 127092389 127092570 -28537550 + MER102b DNA MER1_type 11 192 -149 2 1554 943 163 0 0 chr4 127092854 127092995 -28537125 + B1_Mus1 SINE Alu 3 143 -5 2 1554 183 80 0 0 chr4 127092999 127093024 -28537096 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1554 458 278 7 125 chr4 127093215 127093260 -28536860 + B4A SINE B4 23 57 -235 2 1554 1516 172 11 199 chr4 127093260 127093687 -28536433 - ORR1D1 LTR MaLR -2 372 28 2 1554 198 0 0 0 chr4 127093687 127093709 -28536411 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1554 1516 172 11 199 chr4 127093709 127093739 -28536381 - ORR1D1 LTR MaLR -347 27 1 2 1554 458 278 7 125 chr4 127093739 127093837 -28536283 + B4A SINE B4 58 149 -143 2 1554 233 208 0 14 chr4 127094871 127094944 -28535176 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1554 571 196 12 0 chr4 127094969 127095132 -28534988 + (TG)n Simple_repeat Simple_repeat 2 166 0 2 1554 260 306 0 0 chr4 127095146 127095218 -28534902 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1554 601 283 97 69 chr4 127095247 127095494 -28534626 - B4A SINE B4 -29 263 10 2 1554 302 283 29 29 chr4 127095485 127095587 -28534533 + Cheshire DNA MER1_type 196 297 -2123 2 1554 1085 274 57 51 chr4 127095737 127096087 -28534033 - ORR1E LTR MaLR -7 352 1 2 1554 207 0 0 0 chr4 127096200 127096223 -28533897 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 1554 211 278 8 85 chr4 127096818 127096936 -28533184 - L2b LINE L2 -32 3343 3235 2 1554 1152 234 5 0 chr4 127097555 127097777 -28532343 - ID_B1 SINE B4 0 224 2 2 1554 286 304 149 56 chr4 127097911 127098405 -28531715 - L2a LINE L2 -1 3425 2816 2 1554 208 0 62 0 chr4 127098454 127098486 -28531634 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1554 669 222 230 57 chr4 127098712 127098745 -28531375 - B4 SINE B4 0 292 259 2 1554 342 0 0 0 chr4 127098745 127098783 -28531337 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1554 669 222 230 57 chr4 127098783 127098997 -28531123 - B4 SINE B4 -34 258 2 2 1554 289 245 76 67 chr4 127099272 127099377 -28530743 + MLT1B LTR MaLR 2 107 -283 2 1554 223 317 0 58 chr4 127099464 127099551 -28530569 - ID4_ SINE ID 0 83 2 2 1554 527 344 38 70 chr4 127099551 127099864 -28530256 + MLT1B LTR MaLR 78 380 -10 2 1554 1408 232 82 49 chr4 127100365 127100732 -28529388 + MTEa LTR MaLR 1 379 0 2 1554 186 300 200 0 chr4 127101179 127101269 -28528851 - MIRb SINE MIR -6 262 155 2 1554 830 78 60 0 chr4 127102035 127102202 -28527918 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 1554 842 162 8 16 chr4 127102205 127102456 -28527664 + GA-rich Low_complexity Low_complexity 1 249 0 2 1554 750 241 0 37 chr4 127102497 127102661 -28527459 - B3A SINE B2 -1 197 40 2 1554 333 0 0 0 chr4 127102772 127102809 -28527311 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1554 417 70 0 0 chr4 127102809 127102865 -28527255 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1554 968 230 13 40 chr4 127104516 127104742 -28525378 + MTEa LTR MaLR 2 221 -158 2 1554 742 215 70 31 chr4 127104751 127104954 -28525166 + MTEa LTR MaLR 164 373 -6 2 1554 453 332 64 5 chr4 127104960 127105163 -28524957 + Tigger9b DNA MER2_type 201 415 -209 2 1554 225 286 123 98 chr4 127105200 127105282 -28524838 + Tigger9b DNA MER2_type 393 466 -158 2 1554 234 62 0 0 chr4 127105282 127105314 -28524806 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1554 225 286 123 98 chr4 127105314 127105394 -28524726 + Tigger9b DNA MER2_type 467 559 -65 2 1554 229 299 34 11 chr4 127105419 127105507 -28524613 - L1MB3 LINE L1 0 6183 6094 2 1554 1613 201 131 42 chr4 127105509 127106004 -28524116 - RMER4B LTR ERVK 0 585 1 2 1554 1063 226 43 46 chr4 127106013 127106201 -28523919 - L1MB3 LINE L1 -95 6088 5895 2 1554 1293 246 12 124 chr4 127106201 127106628 -28523492 + MTE2a LTR MaLR 1 379 0 2 1554 1063 226 43 46 chr4 127106628 127106764 -28523356 - L1MB3 LINE L1 -289 5894 5765 2 1554 248 338 105 26 chr4 127106808 127106960 -28523160 - MIR SINE MIR -97 165 2 2 1554 429 250 8 40 chr4 127107031 127107130 -28522990 - LTR90B LTR LTR 0 796 702 2 1554 352 318 24 87 chr4 127107130 127107409 -28522711 + LTR85b LTR Gypsy? 1 262 -561 2 1554 359 185 25 0 chr4 127108333 127108414 -28521706 + C-rich Low_complexity Low_complexity 4 86 0 2 1554 755 311 27 48 chr4 127108493 127108787 -28521333 - B4 SINE B4 -4 288 1 2 1554 261 119 0 0 chr4 127109268 127109310 -28520810 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 2 1554 1065 260 47 23 chr4 127109597 127109853 -28520267 + B4A SINE B4 1 262 -30 2 1554 804 63 0 0 chr4 127109861 127109972 -28520148 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1554 435 266 67 40 chr4 127110068 127110217 -28519903 + RSINE1 SINE B4 3 155 -10 2 1554 394 304 88 49 chr4 127110373 127110681 -28519439 + L1ME1 LINE L1 5331 5650 -529 2 1554 252 0 0 0 chr4 127110688 127110716 -28519404 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1554 268 288 13 27 chr4 127110722 127110797 -28519323 - RSINE1 SINE B4 -17 148 75 2 1554 567 301 78 42 chr4 127110996 127111447 -28518673 + L1ME1 LINE L1 5708 6326 -8 2 1554 240 111 0 0 chr4 127111477 127111513 -28518607 + (CACCAT)n Simple_repeat Simple_repeat 6 41 0 2 1554 330 390 0 0 chr4 127111633 127111726 -28518394 + B4 SINE B4 3 95 -197 2 1554 587 322 11 79 chr4 127111726 127111992 -28518128 + B4A SINE B4 2 249 -43 2 1554 867 249 75 15 chr4 127112389 127112654 -28517466 - B4 SINE B4 -3 289 9 2 1554 488 168 32 0 chr4 127113396 127113521 -28516599 + GA-rich Low_complexity Low_complexity 1 129 0 2 1554 195 100 0 0 chr4 127113659 127113689 -28516431 + (C)n Simple_repeat Simple_repeat 1 30 0 2 1554 849 62 150 0 chr4 127113689 127113802 -28516318 - B1_Mus2 SINE Alu -13 134 5 2 1554 264 322 79 40 chr4 127113812 127113964 -28516156 - MIR SINE MIR -36 226 69 2 1554 360 0 0 0 chr4 127114265 127114305 -28515815 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1554 480 35 0 0 chr4 127114482 127114540 -28515580 + (TATG)n Simple_repeat Simple_repeat 4 61 0 2 1554 890 207 18 6 chr4 127114540 127114705 -28515415 - B3 SINE B2 -49 167 1 2 1554 464 255 20 52 chr4 127114705 127114857 -28515263 - MTEa LTR MaLR -205 174 28 2 1554 234 256 117 29 chr4 127115307 127115359 -28514761 - MT2A LTR ERVL -1 532 477 2 1554 1139 85 94 28 chr4 127115359 127115540 -28514580 + B2_Mm2 SINE B2 2 194 -1 2 1554 234 256 117 29 chr4 127115540 127115624 -28514496 - MT2A LTR ERVL -57 476 384 2 1554 228 206 116 134 chr4 127115578 127115690 -28514430 - RLTR13B2 LTR ERVK -283 539 430 2 1554 244 366 0 11 chr4 127115729 127115823 -28514297 - MT2A LTR ERVL -181 352 260 2 1554 339 367 12 38 chr4 127115821 127115983 -28514137 - MTEa LTR MaLR -185 194 40 2 1554 812 217 0 8 chr4 127115985 127116237 -28513883 + CT-rich Low_complexity Low_complexity 1 249 0 2 1554 1105 246 12 28 chr4 127116310 127116527 -28513593 - B4 SINE B4 -8 284 72 2 1554 1816 136 33 57 chr4 127116527 127116892 -28513228 + ORR1A3 LTR MaLR 3 387 -7 2 1554 21 36 0 0 chr4 127117382 127117410 -28512710 + AT_rich Low_complexity Low_complexity 1 28 0 2 1554 363 73 0 0 chr4 127117455 127117510 -28512610 + (TGAG)n Simple_repeat Simple_repeat 4 58 0 2 1554 328 254 42 0 chr4 127117511 127117582 -28512538 - RSINE1 SINE B4 -90 75 2 2 1554 965 158 0 0 chr4 127117633 127117772 -28512348 - B1_Mus2 SINE Alu -7 140 2 2 1554 264 275 0 28 chr4 127117852 127117923 -28512197 - MLT1A1 LTR MaLR -35 373 305 2 1554 307 322 42 15 chr4 127117924 127118185 -28511935 + L1ME3 LINE L1 5738 6004 -175 2 1554 446 299 70 76 chr4 127118352 127118721 -28511399 + L1ME2 LINE L1 5329 5695 -484 2 1554 315 262 73 64 chr4 127118746 127118856 -28511264 + L1ME2 LINE L1 5818 5928 -236 2 1554 427 222 116 22 chr4 127118856 127118994 -28511126 - MLT1A1 LTR MaLR 0 408 258 2 1554 388 299 284 0 chr4 127119789 127119916 -28510204 + RSINE1 SINE B4 1 163 -2 2 1554 489 316 133 65 chr4 127120091 127120598 -28509522 + L1M5 LINE L1 3353 3903 -2243 2 1554 315 0 0 0 chr4 127120598 127120633 -28509487 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1554 489 316 133 65 chr4 127120633 127120794 -28509326 + L1M5 LINE L1 3904 4079 -2067 2 1554 306 0 0 0 chr4 127120794 127120828 -28509292 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1554 489 316 133 65 chr4 127120828 127121167 -28508953 + L1M5 LINE L1 4080 4428 -1718 2 1554 332 250 47 39 chr4 127121213 127121342 -28508778 + L1M5 LINE L1 4524 4653 -1493 2 1554 467 150 26 26 chr4 127121384 127121499 -28508621 + ORR1B1 LTR MaLR 1 125 -269 2 1554 1881 167 18 72 chr4 127121488 127121888 -28508232 + ORR1B1 LTR MaLR 9 386 -8 2 1554 671 205 24 0 chr4 127122148 127122275 -28507845 + B1_Mur2 SINE Alu 12 141 -8 3 1554 592 257 40 13 chr4 127122290 127122314 -28507806 + B3A SINE B2 10 37 -161 3 1554 1818 138 153 21 chr4 127122314 127122648 -28507472 + ORR1C1 LTR MaLR 1 378 0 3 1554 592 263 42 31 chr4 127122648 127122816 -28507304 + B3A SINE B2 37 194 -1 3 1554 58 60 0 0 chr4 127122883 127122983 -28507137 + AT_rich Low_complexity Low_complexity 1 100 0 3 1554 1554 273 21 37 chr4 127123031 127123408 -28506712 + MTEa LTR MaLR 2 372 -7 3 1554 319 286 153 53 chr4 127123410 127123580 -28506540 - MIR SINE MIR -64 198 12 3 1554 376 290 71 71 chr4 127123884 127124025 -28506095 + RSINE1 SINE B4 1 141 -24 3 1554 333 0 0 0 chr4 127124040 127124077 -28506043 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1554 618 313 105 21 chr4 127124169 127124551 -28505569 + L1M5 LINE L1 5408 5821 -419 2 1554 412 314 111 72 chr4 127124591 127125309 -28504811 + L1MD2 LINE L1 5192 5908 -451 3 1554 1308 234 29 49 chr4 127125309 127125695 -28504425 - MTEb LTR MaLR 0 379 2 3 1554 412 316 138 83 chr4 127125695 127126064 -28504056 + L1MD2 LINE L1 5909 6324 -35 3 1554 903 137 0 52 chr4 127126145 127126299 -28503821 - B1_Mus1 SINE Alu -1 147 2 3 1554 1501 147 0 4 chr4 127126355 127126587 -28503533 + RLTR14 LTR ERV1 11 241 -141 3 1554 508 206 0 10 chr4 127126632 127126730 -28503390 + RLTR14 LTR ERV1 240 336 -46 3 1554 1320 31 0 30 chr4 127126751 127126916 -28503204 + B2_Mm1t SINE B2 1 160 -33 3 1554 243 0 0 0 chr4 127126916 127126943 -28503177 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1554 656 273 118 5 chr4 127127052 127127273 -28502847 - L1_Mur3 LINE L1 -618 5262 5017 3 1554 1043 314 78 58 chr4 127127281 127127859 -28502261 + Lx8 LINE L1 6727 7416 -57 3 1554 285 259 102 57 chr4 127127859 127127968 -28502152 + RMER1C Other Other 1159 1276 -66 3 1554 294 29 0 0 chr4 127127968 127128003 -28502117 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1554 1043 314 78 58 chr4 127128003 127128045 -28502075 + Lx8 LINE L1 7417 7470 -3 3 1554 285 259 102 57 chr4 127128045 127128069 -28502051 + RMER1C Other Other 1277 1342 0 3 1554 2469 146 43 5 chr4 127128093 127128491 -28501629 - MTC LTR MaLR -8 413 1 3 1554 659 206 30 66 chr4 127128491 127128641 -28501479 + MTE2b LTR MaLR 192 335 -44 3 1554 619 244 39 0 chr4 127128680 127128807 -28501313 - RSINE1 SINE B4 -31 134 3 3 1554 228 161 214 0 chr4 127128807 127128863 -28501257 + MTE2b LTR MaLR 312 379 0 3 1554 212 173 39 0 chr4 127128880 127128932 -28501188 + CT-rich Low_complexity Low_complexity 2 55 0 3 1554 320 337 64 69 chr4 127128942 127128961 -28501159 - B4A SINE B4 -47 245 184 3 1554 859 157 8 0 chr4 127128961 127129095 -28501025 - B1_Mus2 SINE Alu -6 141 7 3 1554 320 337 64 69 chr4 127129095 127129130 -28500990 - B4A SINE B4 -47 183 59 3 1554 771 11 0 0 chr4 127130256 127130344 -28499776 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 1554 180 0 0 0 chr4 127130344 127130363 -28499757 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1554 1136 50 0 0 chr4 127130427 127130566 -28499554 - B1_Mus1 SINE Alu -1 147 9 3 1554 722 284 98 10 chr4 127130578 127130781 -28499339 - B4 SINE B4 -69 223 3 3 1554 537 248 69 8 chr4 127131308 127131438 -28498682 - B1F SINE Alu -2 147 10 3 1554 616 269 7 7 chr4 127131696 127131842 -28498278 - B1F SINE Alu 0 149 4 3 1554 871 322 42 32 chr4 127132269 127132554 -28497566 - B4A SINE B4 0 292 5 3 1554 2205 206 90 39 chr4 127133090 127133655 -28496465 - RMER13B LTR ERVK -4 904 311 3 1554 2111 177 27 26 chr4 127133655 127134124 -28495996 - RMER17B LTR ERVK -519 439 1 3 1554 2208 117 73 6 chr4 127134124 127134468 -28495652 + ORR1B1 LTR MaLR 28 394 0 3 1554 1545 224 74 8 chr4 127134491 127134843 -28495277 - MTEb LTR MaLR -4 375 1 3 1554 2876 154 80 7 chr4 127134909 127135139 -28494981 + RMER6C LTR ERVK 86 323 -367 3 1554 574 0 58 0 chr4 127135139 127135225 -28494895 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1554 2876 154 80 7 chr4 127135225 127135558 -28494562 + RMER6C LTR ERVK 324 690 0 3 1554 1523 59 0 0 chr4 127135917 127136103 -28494017 - B2_Mm1t SINE B2 -6 187 2 3 1554 269 354 184 0 chr4 127136237 127136384 -28493736 - L2 LINE L2 -563 2856 2683 3 1554 342 260 131 77 chr4 127136423 127136606 -28493514 - L2 LINE L2 -926 2493 2301 3 1554 767 320 70 7 chr4 127136656 127136927 -28493193 + B4A SINE B4 1 288 -4 3 1554 771 88 0 0 chr4 127136937 127137050 -28493070 + (CA)n Simple_repeat Simple_repeat 1 113 0 3 1554 264 59 0 0 chr4 127137128 127137162 -28492958 + (GGAGA)n Simple_repeat Simple_repeat 3 36 0 3 1554 991 141 170 10 chr4 127138743 127138937 -28491183 - URR1B DNA MER1_type 0 225 1 3 1554 189 154 0 0 chr4 127139771 127139810 -28490310 + T-rich Low_complexity Low_complexity 1 39 0 3 1555 2159 110 3 68 chr4 127140710 127141062 -28489058 + ORR1A4 LTR MaLR 1 329 0 3 1555 9929 122 88 94 chr4 127141063 127141898 -28488222 + ORR1A4-int LTR MaLR 2 845 -1118 3 1555 2892 46 3 11 chr4 127141898 127142247 -28487873 - ORR1A0 LTR MaLR 0 346 1 3 1555 9929 122 88 94 chr4 127142247 127143386 -28486734 + ORR1A4-int LTR MaLR 846 1963 0 3 1555 482 153 23 23 chr4 127143393 127143480 -28486640 + ORR1A4 LTR MaLR 41 127 -267 3 1555 2960 70 49 3 chr4 127143480 127143869 -28486251 + L1_Mus1 LINE L1 6161 6567 0 3 1555 183 80 0 0 chr4 127143944 127143969 -28486151 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1555 1628 118 35 15 chr4 127143970 127144229 -28485891 + ORR1A4 LTR MaLR 64 327 -2 3 1555 3693 76 4 12 chr4 127144379 127144858 -28485262 + MT2C_Mm LTR ERVL 1 475 0 3 1555 1116 233 206 3 chr4 127144937 127145243 -28484877 + MTE2b LTR MaLR 1 368 -11 3 1555 451 286 113 0 chr4 127145414 127145547 -28484573 - MER117 DNA MER1_type -45 152 5 3 1555 513 0 0 0 chr4 127145919 127145976 -28484144 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1555 189 245 0 0 chr4 127146030 127146079 -28484041 + CT-rich Low_complexity Low_complexity 3 51 0 3 1555 347 309 0 18 chr4 127146079 127146098 -28484022 - PB1D10 SINE Alu -5 112 3 3 1555 353 275 0 21 chr4 127146098 127146191 -28483929 - ID_B1 SINE B4 -50 174 84 3 1555 467 202 35 83 chr4 127146521 127146679 -28483441 + Lx8 LINE L1 5532 5714 -1759 3 1555 4774 304 135 28 chr4 127146760 127147918 -28482202 - Lx8 LINE L1 -1182 6291 5011 3 1555 1301 27 0 0 chr4 127147918 127148064 -28482056 - B1_Mm SINE Alu 0 147 2 3 1555 4774 262 61 32 chr4 127148064 127148488 -28481632 - Lx8 LINE L1 -870 5010 4591 3 1555 180 0 0 0 chr4 127148488 127148508 -28481612 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1555 4774 262 61 32 chr4 127148508 127149311 -28480809 - Lx8 LINE L1 -1290 4590 3745 3 1555 554 232 18 0 chr4 127149571 127149683 -28480437 - PB1D10 SINE Alu -3 114 1 3 1555 663 260 84 97 chr4 127150652 127151056 -28479064 - RMER10A LTR ERVL 0 442 44 3 1555 6284 50 9 1 chr4 127151066 127151831 -28478289 - L1Md_F2 LINE L1 -16 6566 5796 3 1555 305 26 0 0 chr4 127151831 127151864 -28478256 + L1_Mm LINE L1 3489 3521 -2362 3 1555 262 135 0 0 chr4 127151864 127151901 -28478219 - RMER10A LTR ERVL -384 58 22 3 1555 252 0 0 0 chr4 127151913 127151941 -28478179 + (G)n Simple_repeat Simple_repeat 1 28 0 3 1555 223 211 42 0 chr4 127151981 127152052 -28478068 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 3 1555 629 157 29 11 chr4 127153269 127153443 -28476677 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 3 1555 199 162 62 0 chr4 127153457 127153537 -28476583 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 3 1555 303 182 65 0 chr4 127153581 127153735 -28476385 + (TCTA)n Simple_repeat Simple_repeat 2 165 0 3 1555 315 0 0 0 chr4 127153835 127153870 -28476250 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1555 906 142 7 0 chr4 127155103 127155235 -28474885 + B1_Mus1 SINE Alu 7 139 -9 3 1555 248 28 56 0 chr4 127155235 127155271 -28474849 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1555 200 184 0 125 chr4 127155451 127155507 -28474613 - L2c LINE L2 -228 3159 3111 3 1555 321 296 92 0 chr4 127156179 127156277 -28473843 + MIR SINE MIR 8 114 -148 3 1555 292 325 15 37 chr4 127157418 127157552 -28472568 + MER103 DNA DNA 11 141 -25 3 1555 189 0 0 0 chr4 127159631 127159652 -28470468 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 3 1555 214 255 0 21 chr4 127160355 127160403 -28469717 - L2c LINE L2 -318 3069 3023 3 1555 929 301 47 26 chr4 127160975 127161418 -28468702 - L1MA5 LINE L1 -364 5939 5485 3 1555 242 95 24 0 chr4 127161444 127161486 -28468634 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1555 855 261 29 29 chr4 127161848 127162218 -28467902 - L1MA5 LINE L1 -425 5455 5093 3 1555 510 17 0 0 chr4 127162503 127162562 -28467558 + (TTC)n Simple_repeat Simple_repeat 2 60 0 3 1555 1247 29 0 0 chr4 127162872 127163011 -28467109 + B1_Mus2 SINE Alu 5 143 -4 3 1555 243 0 0 0 chr4 127163013 127163040 -28467080 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1555 1329 87 54 0 chr4 127163052 127163236 -28466884 + B2_Mm2 SINE B2 1 194 -1 3 1555 266 250 0 15 chr4 127163236 127163291 -28466829 + polypurine Low_complexity Low_complexity 10 63 0 3 1555 270 0 0 0 chr4 127164142 127164172 -28465948 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1555 561 267 32 78 chr4 127165005 127165224 -28464896 - MLT1B LTR MaLR -1 389 181 3 1555 363 237 0 0 chr4 127165299 127165392 -28464728 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 3 1555 643 250 31 0 chr4 127165392 127165520 -28464600 - RSINE1 SINE B4 -32 133 2 3 1555 373 241 152 36 chr4 127165520 127165650 -28464470 - MLT1B LTR MaLR -212 178 33 3 1555 199 250 91 45 chr4 127165835 127165923 -28464197 + MIR SINE MIR 109 200 -62 3 1555 995 242 6 217 chr4 127166052 127166527 -28463593 + MTE2a LTR MaLR 3 377 -2 3 1555 321 26 0 0 chr4 127167926 127167964 -28462156 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1555 1193 268 14 17 chr4 127168659 127168948 -28461172 - B4A SINE B4 -4 288 1 3 1555 808 319 32 11 chr4 127168999 127169284 -28460836 + RCHARR1 DNA MER1_type 68 358 -616 3 1555 189 0 0 0 chr4 127169294 127169315 -28460805 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 1555 686 321 43 0 chr4 127169348 127169532 -28460588 - B4A SINE B4 -99 193 2 3 1555 2952 196 34 5 chr4 127169533 127170149 -28459971 + RCHARR1 DNA MER1_type 341 974 0 3 1555 532 268 56 16 chr4 127170619 127170744 -28459376 + RSINE1 SINE B4 4 133 -32 3 1555 234 0 0 0 chr4 127170771 127170797 -28459323 + (ATG)n Simple_repeat Simple_repeat 3 28 0 3 1555 564 236 0 18 chr4 127170836 127170948 -28459172 + ID_B1 SINE B4 87 196 -28 3 1555 545 312 115 89 chr4 127171916 127172559 -28457561 + L2c LINE L2 1426 2085 -1334 3 1555 266 341 26 79 chr4 127172747 127172976 -28457144 + L2c LINE L2 2396 2612 -807 3 1555 705 204 5 0 chr4 127173067 127173290 -28456830 + (TG)n Simple_repeat Simple_repeat 1 224 0 3 1555 209 354 49 49 chr4 127173548 127173670 -28456450 + L2c LINE L2 3266 3387 0 3 1555 336 271 55 35 chr4 127173685 127173830 -28456290 - L1MB4 LINE L1 -1 6179 6032 3 1555 1897 110 4 11 chr4 127173896 127174171 -28455949 + ORR1A4 LTR MaLR 2 274 -55 3 1555 374 298 0 55 chr4 127174428 127174556 -28455564 + L2c LINE L2 3254 3374 -13 4 1555 186 43 0 0 chr4 127174556 127174579 -28455541 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 4 1555 282 364 25 0 chr4 127174586 127174704 -28455416 + L4 LINE RTE 51 171 -1858 4 1555 908 286 202 71 chr4 127175176 127175666 -28454454 + MT2A LTR ERVL 1 554 0 4 1555 2357 42 3 24 chr4 127176468 127176762 -28453358 + L1_Mus1 LINE L1 6280 6567 0 4 1555 662 150 8 0 chr4 127176793 127176913 -28453207 + C-rich Low_complexity Low_complexity 5 125 0 4 1555 195 129 0 0 chr4 127176910 127176941 -28453179 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 4 1555 879 261 56 56 chr4 127177778 127177848 -28452272 - B4A SINE B4 -4 288 219 4 1555 1077 128 41 36 chr4 127177848 127178042 -28452078 - B2_Mm2 SINE B2 0 195 1 4 1555 879 261 56 56 chr4 127178042 127178259 -28451861 - B4A SINE B4 -74 218 1 4 1555 613 193 27 9 chr4 127178284 127178394 -28451726 + RSINE1 SINE B4 3 114 -51 4 1555 1272 270 78 43 chr4 127179010 127179547 -28450573 + MLT1F2 LTR MaLR 1 556 -4 4 1555 343 243 0 26 chr4 127180488 127180564 -28449556 - MER20 DNA MER1_type -144 75 2 4 1555 408 20 0 0 chr4 127180745 127180794 -28449326 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1555 536 143 89 15 chr4 127181836 127181945 -28448175 - Lx9 LINE L1 0 7644 7524 4 1555 219 36 0 0 chr4 127181945 127181973 -28448147 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1555 2754 208 68 12 chr4 127181973 127182652 -28447468 - Lx9 LINE L1 -121 7523 6767 4 1555 319 273 382 0 chr4 127182665 127182775 -28447345 - RSINE1 SINE B4 -12 153 2 4 1555 458 321 245 21 chr4 127182844 127183223 -28446897 + MLT1D LTR MaLR 23 486 -19 4 1555 219 250 28 56 chr4 127184450 127184522 -28445598 + MIRb SINE MIR 184 253 -9 4 1555 187 173 39 0 chr4 127185242 127185294 -28444826 + GA-rich Low_complexity Low_complexity 1 54 0 4 1555 242 291 296 7 chr4 127186936 127187071 -28443049 + LTR33 LTR ERVL 15 188 -327 4 1555 206 314 13 93 chr4 127187280 127187431 -28442689 - L2a LINE L2 -261 3165 3027 4 1555 360 0 0 0 chr4 127187698 127187738 -28442382 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1555 180 348 32 21 chr4 127187803 127187897 -28442223 - MIR SINE MIR -74 134 40 4 1555 405 255 92 0 chr4 127187924 127188022 -28442098 - PB1D10 SINE Alu -8 109 3 4 1555 236 255 20 0 chr4 127189397 127189448 -28440672 - B4 SINE B4 -214 78 27 4 1555 587 220 114 0 chr4 127189460 127189592 -28440528 - B1_Mur4 SINE Alu -2 148 2 4 1555 378 0 0 0 chr4 127189660 127189702 -28440418 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1555 195 69 0 0 chr4 127189702 127189731 -28440389 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1555 1022 203 53 0 chr4 127190120 127190307 -28439813 + B3 SINE B2 6 202 -14 4 1555 423 0 0 0 chr4 127190308 127190355 -28439765 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 4 1555 295 320 19 0 chr4 127190809 127190912 -28439208 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 4 1555 508 240 6 6 chr4 127190912 127191092 -28439028 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 4 1555 393 22 0 0 chr4 127191388 127191434 -28438686 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1555 587 252 48 66 chr4 127191741 127191907 -28438213 + RSINE1 SINE B4 3 165 0 4 1555 187 147 14 29 chr4 127191910 127191980 -28438140 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 4 1555 567 194 0 0 chr4 127191981 127192212 -28437908 + (CA)n Simple_repeat Simple_repeat 1 231 0 4 1555 332 48 0 0 chr4 127192227 127192269 -28437851 + HAL1-3A_ME LINE L1 1976 2017 -841 4 1555 30 27 0 0 chr4 127192529 127192566 -28437554 + AT_rich Low_complexity Low_complexity 1 37 0 4 1555 615 199 20 0 chr4 127192937 127193189 -28436931 + (TCCA)n Simple_repeat Simple_repeat 1 257 0 4 1555 1156 191 24 14 chr4 127195344 127195556 -28434564 - B3 SINE B2 -1 215 2 4 1555 362 200 172 32 chr4 127196452 127196545 -28433575 + PB1D9 SINE Alu 8 113 -7 4 1555 283 279 44 0 chr4 127196868 127196936 -28433184 + B4A SINE B4 24 94 -198 4 1555 359 244 8 102 chr4 127197152 127197280 -28432840 - PB1D10 SINE Alu -1 116 1 4 1555 8722 2 0 0 chr4 127197303 127198845 -28431275 - L1Md_A LINE L1 0 6582 5041 4 1555 225 229 14 54 chr4 127199410 127199484 -28430636 - LTR33B LTR ERVL -46 457 387 4 1555 295 291 49 5 chr4 127200065 127200263 -28429857 - L1MA4 LINE L1 -262 6041 5792 4 1555 226 380 76 10 chr4 127200288 127200485 -28429635 - MamRep605 Unknown Unknown -449 427 218 4 1555 423 0 0 0 chr4 127200609 127200656 -28429464 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1555 198 0 0 0 chr4 127200656 127200677 -28429443 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1555 461 211 144 30 chr4 127200679 127200811 -28429309 - RSINE1 SINE B4 -16 149 3 4 1555 1635 200 56 13 chr4 127200836 127201177 -28428943 - MTE2b LTR MaLR 0 370 19 4 1555 441 0 0 0 chr4 127201361 127201410 -28428710 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1555 231 253 45 100 chr4 127201424 127201534 -28428586 - LTR78 LTR ERV1 -351 953 850 4 1555 924 288 14 12 chr4 127201543 127201917 -28428203 + Lx7 LINE L1 5547 5910 -534 4 1555 542 205 5 0 chr4 127201918 127202105 -28428015 + (TG)n Simple_repeat Simple_repeat 1 188 0 4 1555 411 347 98 9 chr4 127202370 127202594 -28427526 - LTR78 LTR ERV1 -582 722 479 4 1555 557 316 74 0 chr4 127202845 127203035 -28427085 + B4A SINE B4 69 272 -20 4 1555 393 194 0 0 chr4 127203081 127203153 -28426967 + ID_B1 SINE B4 151 222 -2 4 1555 374 234 52 88 chr4 127203318 127203510 -28426610 - MER106B DNA MER1_type -466 593 409 4 1555 255 318 187 23 chr4 127203693 127203912 -28426208 - LTR78 LTR ERV1 -1045 259 5 4 1555 204 317 48 12 chr4 127203916 127203999 -28426121 + L2b LINE L2 3226 3311 -64 4 1555 293 301 15 29 chr4 127204059 127204196 -28425924 + GA-rich Low_complexity Low_complexity 4 138 0 4 1555 242 265 45 98 chr4 127204477 127204658 -28425462 - MIR SINE MIR -27 181 16 4 1555 781 257 30 105 chr4 127205284 127205588 -28424532 - B4 SINE B4 -11 281 1 4 1555 459 0 0 0 chr4 127205779 127205830 -28424290 + (GGGA)n Simple_repeat Simple_repeat 1 51 0 4 1555 245 287 80 80 chr4 127205936 127206061 -28424059 + MER58B DNA MER1_type 1 125 -216 4 1555 407 286 29 95 chr4 127206520 127206955 -28423165 + RMER17C LTR ERVK 1 376 -34 4 1555 1098 192 14 14 chr4 127207114 127207330 -28422790 - B3 SINE B2 0 216 1 4 1555 214 192 0 19 chr4 127207380 127207433 -28422687 + GA-rich Low_complexity Low_complexity 2 53 0 4 1555 493 261 126 0 chr4 127207436 127207555 -28422565 - RSINE1 SINE B4 -28 137 4 4 1555 354 286 174 51 chr4 127207559 127207606 -28422514 - MER20 DNA MER1_type 0 219 162 4 1555 414 0 0 0 chr4 127207606 127207652 -28422468 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1555 354 286 174 51 chr4 127207652 127207799 -28422321 - MER20 DNA MER1_type -58 161 2 4 1555 369 376 48 0 chr4 127209021 127209186 -28420934 + LTR33 LTR ERVL 1 173 -342 4 1555 262 329 119 12 chr4 127209213 127209373 -28420747 + LTR33 LTR ERVL 244 420 -95 4 1555 2292 137 26 34 chr4 127211953 127212331 -28417789 - ORR1C1 LTR MaLR -1 377 3 4 1555 434 241 0 87 chr4 127212386 127212513 -28417607 + MLT1H2 LTR MaLR 77 192 -297 4 1555 258 435 42 28 chr4 127212693 127212906 -28417214 - LTR88c LTR Genie? -551 311 96 4 1555 455 232 153 31 chr4 127212993 127213166 -28416954 - B3A SINE B2 -1 194 21 4 1555 1237 55 0 0 chr4 127213196 127213342 -28416778 - B1_Mus2 SINE Alu 0 147 2 4 1555 983 254 40 114 chr4 127213800 127214204 -28415916 - MTEa LTR MaLR -5 374 1 4 1555 288 0 0 0 chr4 127214259 127214291 -28415829 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1555 273 159 7 0 chr4 127214320 127214373 -28415747 - MER58B DNA MER1_type -130 211 157 4 1555 297 0 0 0 chr4 127215319 127215352 -28414768 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1555 652 146 23 0 chr4 127215352 127215523 -28414597 + (CAGA)n Simple_repeat Simple_repeat 2 176 0 4 1555 259 242 23 91 chr4 127216059 127216152 -28413968 + L1MA6 LINE L1 6157 6241 -59 4 1555 803 254 71 14 chr4 127216152 127216364 -28413756 + ID_B1 SINE B4 1 224 0 4 1555 259 242 23 91 chr4 127216364 127216402 -28413718 + L1MA6 LINE L1 6242 6279 -21 4 1555 572 250 165 12 chr4 127217307 127217477 -28412643 + B4 SINE B4 10 205 -87 4 1555 788 71 9 0 chr4 127217531 127217643 -28412477 + (CA)n Simple_repeat Simple_repeat 1 113 0 4 1555 252 172 0 0 chr4 127217754 127217812 -28412308 + CT-rich Low_complexity Low_complexity 2 59 0 4 1555 393 303 40 0 chr4 127217812 127217911 -28412209 - PB1D10 SINE Alu -3 114 12 4 1555 798 251 37 21 chr4 127218269 127218460 -28411660 - B3A SINE B2 -4 194 1 4 1555 213 224 0 0 chr4 127219486 127219544 -28410576 + (TATG)n Simple_repeat Simple_repeat 1 58 0 4 1555 561 227 6 11 chr4 127219552 127219726 -28410394 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 4 1555 513 236 0 17 chr4 127219763 127219940 -28410180 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 4 1555 2557 176 206 85 chr4 127220641 127221547 -28408573 + RMER1B Other Other 47 1062 -4 4 1555 209 33 0 32 chr4 127221571 127221602 -28408518 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 4 1555 199 220 100 17 chr4 127221692 127221752 -28408368 + MIRb SINE MIR 203 267 -1 4 1555 350 326 86 14 chr4 127222708 127222848 -28407272 + MIR3 SINE MIR 45 194 -14 4 1555 377 278 30 38 chr4 127222923 127223054 -28407066 + MIRb SINE MIR 1 130 -138 4 1555 229 0 26 53 chr4 127223709 127223747 -28406373 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 1555 1079 277 113 14 chr4 127223747 127224117 -28406003 + MTD LTR MaLR 13 419 0 4 1555 273 319 45 72 chr4 127224581 127224749 -28405371 - L2 LINE L2 -407 3012 2847 4 1555 257 0 0 29 chr4 127224749 127224783 -28405337 + (TTA)n Simple_repeat Simple_repeat 3 35 0 4 1555 273 319 45 72 chr4 127224783 127224837 -28405283 - L2 LINE L2 -573 2846 2797 4 1555 235 72 23 23 chr4 127225728 127225747 -28404373 + (TTCTC)n Simple_repeat Simple_repeat 5 23 0 4 1555 1329 73 0 0 chr4 127225747 127225925 -28404195 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1555 235 72 23 23 chr4 127225925 127225948 -28404172 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 5 1555 405 0 0 0 chr4 127225948 127225993 -28404127 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 5 1555 619 164 0 60 chr4 127225994 127226111 -28404009 - B1_Mur1 SINE Alu -6 143 34 5 1555 336 317 68 104 chr4 127226214 127226464 -28403656 + MIRb SINE MIR 17 257 -11 5 1555 546 0 0 39 chr4 127227354 127227431 -28402689 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 5 1555 1144 65 0 0 chr4 127227431 127227570 -28402550 - B1_Mus1 SINE Alu -9 139 1 5 1555 481 252 9 36 chr4 127227638 127227749 -28402371 + RSINE1 SINE B4 48 155 -10 5 1555 257 86 51 17 chr4 127227765 127227824 -28402296 + (TAA)n Simple_repeat Simple_repeat 2 62 0 5 1555 208 171 29 0 chr4 127227824 127227859 -28402261 - L2 LINE L2 -608 2811 2776 4 1555 494 315 70 44 chr4 127228251 127228523 -28401597 + B4A SINE B4 5 283 -9 5 1555 359 100 33 0 chr4 127228638 127228698 -28401422 + (ATGGTG)n Simple_repeat Simple_repeat 5 66 0 5 1555 607 302 0 28 chr4 127228770 127228913 -28401207 - RSINE1 SINE B4 -24 141 3 5 1555 1043 161 114 5 chr4 127228934 127229127 -28400993 - URR1A DNA MER1_type -1 225 12 5 1555 195 139 0 0 chr4 127229205 127229241 -28400879 + (CAT)n Simple_repeat Simple_repeat 2 37 0 5 1555 247 308 13 107 chr4 127229330 127229479 -28400641 + L2a LINE L2 3065 3199 -227 5 1555 235 229 33 0 chr4 127229587 127229648 -28400472 + (TGG)n Simple_repeat Simple_repeat 2 64 0 5 1555 276 235 0 0 chr4 127229746 127229814 -28400306 + CT-rich Low_complexity Low_complexity 2 69 0 5 1555 254 203 0 59 chr4 127231054 127231122 -28398998 + (CGGGG)n Simple_repeat Simple_repeat 1 64 0 5 1555 201 345 88 0 chr4 127231516 127231629 -28398491 - L2a LINE L2 -265 3161 3039 5 1555 1190 252 82 28 chr4 127232061 127232098 -28398022 + MTE2b LTR MaLR 6 42 -337 5 1555 1317 135 17 47 chr4 127232098 127232331 -28397789 + URR1A DNA MER1_type 1 226 0 5 1555 1190 240 181 21 chr4 127232331 127232634 -28397486 + MTE2b LTR MaLR 43 359 0 5 1555 678 347 46 38 chr4 127233341 127233707 -28396413 - MER97b DNA MER1_type? -257 796 428 5 1555 565 273 60 8 chr4 127233850 127233983 -28396137 + ID_B1 SINE B4 82 221 -3 5 1555 966 130 0 0 chr4 127234521 127234675 -28395445 + (TTCTC)n Simple_repeat Simple_repeat 2 155 0 5 1555 258 32 0 0 chr4 127234676 127234707 -28395413 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 5 1555 426 39 0 0 chr4 127234707 127234759 -28395361 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 5 1555 1164 37 0 0 chr4 127234759 127234894 -28395226 - B1_Mus2 SINE Alu -12 135 1 5 1555 590 319 109 57 chr4 127235544 127235989 -28394131 + L2a LINE L2 2939 3423 -3 5 1555 228 278 38 76 chr4 127236543 127236648 -28393472 + MTA_Mm LTR MaLR 178 278 -118 5 1555 22 35 0 0 chr4 127237353 127237382 -28392738 + AT_rich Low_complexity Low_complexity 1 29 0 5 1555 550 253 63 29 chr4 127237394 127237569 -28392551 - B3A SINE B2 -16 182 2 5 1555 471 340 93 47 chr4 127237778 127238228 -28391892 - LTR33 LTR ERVL 0 515 45 5 1555 1502 152 0 0 chr4 127238944 127239168 -28390952 - URR1A DNA MER1_type -1 225 2 5 1555 945 64 0 0 chr4 127239215 127239340 -28390780 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 5 1555 1141 62 0 0 chr4 127239342 127239488 -28390632 - B1_Mus2 SINE Alu 0 147 2 5 1555 405 0 0 0 chr4 127240275 127240320 -28389800 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1555 351 0 0 0 chr4 127240320 127240358 -28389762 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1555 333 0 0 0 chr4 127240362 127240399 -28389721 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1555 221 233 0 0 chr4 127241406 127241449 -28388671 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1555 341 257 150 154 chr4 127241465 127241745 -28388375 - MER44A DNA MER2_type -30 309 31 5 1555 736 251 129 10 chr4 127241787 127241980 -28388140 - B3 SINE B2 0 216 1 5 1555 1471 270 75 30 chr4 127241984 127242453 -28387667 + MER82 DNA MER2_type 1 490 -163 5 1555 386 250 0 22 chr4 127242581 127242765 -28387355 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1555 291 258 120 30 chr4 127242891 127242991 -28387129 + PB1D10 SINE Alu 9 117 0 5 1555 268 132 0 0 chr4 127243337 127243375 -28386745 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 5 1555 364 155 57 19 chr4 127243376 127243534 -28386586 + (TCTA)n Simple_repeat Simple_repeat 4 167 0 5 1555 320 201 66 15 chr4 127243557 127243693 -28386427 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 5 1555 861 272 149 28 chr4 127244097 127244642 -28385478 - HAL1 LINE L1 -306 2201 1591 5 1555 625 304 91 44 chr4 127244890 127245320 -28384800 - HAL1 LINE L1 -1324 1183 734 5 1555 452 340 46 81 chr4 127245792 127246138 -28383982 - MLT1A LTR MaLR 0 374 32 5 1555 387 322 34 20 chr4 127246549 127246695 -28383425 + MER117 DNA MER1_type 3 150 -47 5 1555 280 355 24 16 chr4 127246746 127246872 -28383248 - MER5A DNA MER1_type 0 189 63 5 1555 216 200 0 0 chr4 127246874 127246919 -28383201 + (TATG)n Simple_repeat Simple_repeat 2 46 0 5 1555 893 116 6 0 chr4 127246920 127247093 -28383027 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 5 1555 1221 152 11 0 chr4 127247101 127247292 -28382828 + ORR1C1 LTR MaLR 186 378 0 5 1555 439 304 187 6 chr4 127247292 127247470 -28382650 + MLT1F2 LTR MaLR 226 436 -124 5 1555 1883 270 92 11 chr4 127247480 127248101 -28382019 - L1MC2 LINE L1 -147 6197 5527 5 1555 332 259 35 61 chr4 127248138 127248253 -28381867 + RMER15 LTR ERVL 38 149 -426 5 1555 972 234 132 4 chr4 127248262 127248528 -28381592 + RMER15 LTR ERVL 276 575 0 5 1555 314 259 118 59 chr4 127248687 127248806 -28381314 - L1MC2 LINE L1 -853 5293 5168 5 1555 339 299 17 70 chr4 127248838 127248953 -28381167 - B4A SINE B4 0 292 184 5 1555 1186 272 42 18 chr4 127248953 127249338 -28380782 - L1MC2 LINE L1 -1200 4946 4553 5 1555 465 19 0 0 chr4 127249405 127249459 -28380661 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1555 544 270 32 60 chr4 127249485 127249783 -28380337 - L1MB8 LINE L1 -75 6103 5822 5 1555 262 220 0 0 chr4 127249788 127249838 -28380282 - L1M4b LINE L1 -651 6392 6343 5 1555 192 40 0 0 chr4 127249854 127249879 -28380241 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1555 987 274 36 18 chr4 127249892 127250167 -28379953 - B4A SINE B4 -12 280 1 5 1555 2160 285 55 24 chr4 127250167 127251341 -28378779 - L1M4b LINE L1 -684 6354 5139 5 1555 226 318 0 0 chr4 127251360 127251423 -28378697 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 5 1555 735 12 0 0 chr4 127251471 127251555 -28378565 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5 1555 1215 161 130 16 chr4 127251583 127251836 -28378284 + RMER10B LTR ERVL 117 398 0 5 1555 1090 245 115 11 chr4 127251841 127252188 -28377932 + Lx9 LINE L1 7257 7639 -5 5 1555 5695 55 1 15 chr4 127252191 127252908 -28377212 + L1Md_F2 LINE L1 5874 6580 -2 5 1555 457 308 22 51 chr4 127252943 127253121 -28376999 + B4A SINE B4 7 179 -113 5 1555 226 208 0 0 chr4 127253123 127253171 -28376949 + C-rich Low_complexity Low_complexity 1 48 0 5 1555 363 73 0 0 chr4 127253294 127253349 -28376771 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1555 598 264 56 5 chr4 127253349 127253547 -28376573 - L1M4b LINE L1 -2207 4799 4592 5 1555 538 276 76 60 chr4 127253552 127253737 -28376383 + B3A SINE B2 11 198 0 5 1555 1152 265 67 40 chr4 127253740 127254259 -28375861 - L1M4b LINE L1 -2406 4600 4068 5 1555 904 256 10 5 chr4 127254291 127254499 -28375621 - ID_B1 SINE B4 -12 212 4 5 1555 180 158 0 0 chr4 127254510 127254548 -28375572 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1555 425 335 43 31 chr4 127254661 127254824 -28375296 - B4A SINE B4 -126 166 2 5 1555 243 88 0 0 chr4 127254824 127254858 -28375262 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1555 1321 286 62 36 chr4 127254859 127255589 -28374531 - L1M4b LINE L1 -2937 4069 3321 5 1555 520 323 151 55 chr4 127255606 127256130 -28373990 - L1M4b LINE L1 -6760 574 1 5 1555 2530 284 56 7 chr4 127257134 127257883 -28372237 - Lx9 LINE L1 -457 7187 6402 5 1555 183 250 32 48 chr4 127258139 127258202 -28371918 - MIR SINE MIR -195 67 6 5 1555 3253 21 42 3 chr4 127258887 127259268 -28370852 + MTA_Mm LTR MaLR 1 396 0 5 1555 180 333 13 0 chr4 127259451 127259526 -28370594 - L4 LINE RTE -234 1795 1720 5 1555 183 184 0 0 chr4 127259849 127259887 -28370233 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1555 412 241 13 0 chr4 127259907 127259986 -28370134 + PB1D10 SINE Alu 1 80 -37 5 1555 209 422 23 8 chr4 127260699 127260828 -28369292 - L4 LINE RTE -388 1641 1511 5 1555 1440 254 13 57 chr4 127261334 127261706 -28368414 + ORR1E LTR MaLR 2 357 -2 5 1555 685 279 86 77 chr4 127261969 127262319 -28367801 - ORR1E LTR MaLR -6 353 1 5 1555 1215 266 72 9 chr4 127262557 127262902 -28367218 + MLT1B LTR MaLR 18 384 -6 5 1555 284 296 95 113 chr4 127262913 127263187 -28366933 - Lx8 LINE L1 0 7473 7205 5 1555 373 264 11 0 chr4 127263302 127263389 -28366731 - Lx8 LINE L1 -320 7153 7066 5 1555 598 313 61 44 chr4 127264403 127264697 -28365423 + LTR16C LTR ERVL 186 484 -5 5 1555 435 106 0 0 chr4 127265273 127265339 -28364781 + (GGA)n Simple_repeat Simple_repeat 1 66 0 5 1555 1842 269 43 44 chr4 127265626 127266213 -28363907 + Lx8 LINE L1 6233 6818 -655 5 1555 345 102 0 0 chr4 127266339 127266398 -28363722 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 5 1555 541 289 105 5 chr4 127266400 127266591 -28363529 - ID_B1 SINE B4 -14 210 1 5 1555 368 317 36 41 chr4 127267903 127268097 -28362023 + L1MC4a LINE L1 6665 6857 -1025 5 1555 205 277 126 11 chr4 127268244 127268339 -28361781 - MIR SINE MIR -77 185 80 5 1555 186 298 35 0 chr4 127269165 127269222 -28360898 + L3 LINE CR1 4426 4484 -5 5 1555 443 351 30 6 chr4 127270211 127270380 -28359740 + MER58A DNA MER1_type 42 214 -10 5 1555 660 230 0 155 chr4 127270381 127270607 -28359513 + B3A SINE B2 1 191 -7 5 1556 225 196 0 0 chr4 127271151 127271202 -28358918 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1556 335 331 16 41 chr4 127271680 127271803 -28358317 - MLT1K LTR MaLR -8 587 468 5 1556 1184 253 104 3 chr4 127271935 127272232 -28357888 - MTEa LTR MaLR -52 327 1 5 1556 213 71 95 0 chr4 127272768 127272810 -28357310 + T-rich Low_complexity Low_complexity 4 49 0 5 1556 1198 68 0 0 chr4 127272914 127273061 -28357059 + B1_Mus1 SINE Alu 2 148 0 5 1556 297 0 0 0 chr4 127273103 127273136 -28356984 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1556 305 0 50 0 chr4 127273970 127274010 -28356110 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 6 1556 1012 239 14 5 chr4 127275087 127275301 -28354819 + B3 SINE B2 1 216 0 6 1556 371 266 51 0 chr4 127275657 127275736 -28354384 + RSINE1 SINE B4 75 157 -8 6 1556 240 272 105 32 chr4 127275748 127275843 -28354277 + B1F SINE Alu 20 121 -28 6 1556 359 268 0 12 chr4 127275769 127275852 -28354268 + ID_B1 SINE B4 127 208 -16 6 1556 405 0 0 0 chr4 127275857 127275902 -28354218 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 6 1556 386 175 35 0 chr4 127276079 127276193 -28353927 + CT-rich Low_complexity Low_complexity 4 121 0 6 1556 444 205 20 0 chr4 127277148 127277299 -28352821 + (CA)n Simple_repeat Simple_repeat 1 154 0 6 1556 393 274 116 26 chr4 127277459 127277698 -28352422 - MIRb SINE MIR -21 241 2 6 1556 206 118 0 0 chr4 127277700 127277734 -28352386 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 6 1556 971 261 44 77 chr4 127277740 127278014 -28352106 - B4 SINE B4 0 292 28 6 1556 429 230 170 15 chr4 127279460 127279604 -28350516 - MIRb SINE MIR -50 218 56 6 1556 371 298 140 12 chr4 127280527 127280797 -28349323 - L1ME1 LINE L1 -8 6344 6017 6 1556 278 346 8 23 chr4 127280808 127280941 -28349179 - L1ME1 LINE L1 -1990 4329 4199 6 1556 565 176 9 53 chr4 127281062 127281176 -28348944 - PB1D10 SINE Alu -8 109 1 6 1556 543 16 0 0 chr4 127281204 127281268 -28348852 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 6 1556 962 272 39 25 chr4 127281309 127281595 -28348525 - B4A SINE B4 0 292 3 6 1556 793 342 82 51 chr4 127281595 127282443 -28347677 - L1ME1 LINE L1 -2160 4159 3285 6 1556 792 160 0 0 chr4 127282560 127282902 -28347218 + (TG)n Simple_repeat Simple_repeat 1 342 0 6 1556 410 286 22 101 chr4 127282905 127283084 -28347036 - RSINE1 SINE B4 0 165 1 6 1556 267 288 188 0 chr4 127283085 127283325 -28346795 - L1MC LINE L1 -3172 2974 2684 6 1556 306 73 0 0 chr4 127283403 127283444 -28346676 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1556 309 389 81 23 chr4 127283500 127283721 -28346399 - L1ME1 LINE L1 -3608 2711 2478 6 1556 410 272 11 69 chr4 127283756 127283954 -28346166 - L1ME1 LINE L1 -3873 2446 2273 6 1556 206 225 0 0 chr4 127283987 127284027 -28346093 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1556 657 267 12 26 chr4 127284028 127284230 -28345890 - B3A SINE B2 -14 202 8 6 1556 344 282 239 10 chr4 127284411 127284608 -28345512 - L1ME1 LINE L1 -4382 2018 1777 6 1556 231 267 0 0 chr4 127284754 127284814 -28345306 + L1MC3 LINE L1 7718 7777 -8 6 1556 487 329 141 50 chr4 127284891 127285332 -28344788 - Lx8 LINE L1 -6 7467 6987 6 1556 292 189 121 11 chr4 127285618 127285709 -28344411 - L1ME1 LINE L1 -4809 1591 1491 6 1556 2319 132 66 0 chr4 127285712 127286077 -28344043 - ORR1B1 LTR MaLR -3 391 3 6 1556 346 329 178 22 chr4 127286091 127286461 -28343659 - L1ME1 LINE L1 -4880 1535 1108 6 1556 1439 33 0 11 chr4 127286501 127286683 -28343437 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1556 563 40 0 13 chr4 127286683 127286758 -28343362 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 6 1556 402 21 0 0 chr4 127286752 127286799 -28343321 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1556 341 307 126 52 chr4 127286806 127287115 -28343005 - L1ME1 LINE L1 -5395 1005 674 6 1556 242 316 121 35 chr4 127287536 127287710 -28342410 - L1ME1 LINE L1 -6004 396 208 6 1556 507 237 0 0 chr4 127287989 127288145 -28341975 + (TG)n Simple_repeat Simple_repeat 2 157 0 6 1556 600 244 131 46 chr4 127288624 127288929 -28341191 - L1MA7 LINE L1 -119 6172 5842 6 1556 192 77 0 0 chr4 127289013 127289039 -28341081 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 6 1556 722 230 17 80 chr4 127289041 127289216 -28340904 - RSINE1 SINE B4 0 165 2 6 1556 254 318 115 34 chr4 127289938 127290261 -28339859 - ORR1E LTR MaLR -13 366 6 6 1556 216 340 68 29 chr4 127290861 127290964 -28339156 - L3 LINE CR1 -99 4390 4284 6 1556 423 261 188 29 chr4 127291190 127291492 -28338628 + MLT1B LTR MaLR 25 368 -6 6 1556 276 263 29 29 chr4 127291713 127291815 -28338305 - MTEb LTR MaLR 0 379 278 6 1556 302 188 122 24 chr4 127291871 127291953 -28338167 + L1M4c LINE L1 1255 1344 -5040 6 1556 444 262 122 20 chr4 127291983 127292131 -28337989 - B3A SINE B2 -7 191 29 6 1556 246 159 0 0 chr4 127292702 127292746 -28337374 + BGLII LTR ERVK 1 44 -377 6 1556 215 244 0 0 chr4 127292754 127292799 -28337321 - B3A SINE B2 -153 45 1 6 1556 265 227 52 26 chr4 127292799 127292862 -28337258 - MTEb LTR MaLR -250 109 45 6 1556 1293 85 26 16 chr4 127293474 127293510 -28336610 - B2_Mm2 SINE B2 0 195 156 6 1556 1338 58 0 0 chr4 127293510 127293682 -28336438 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 1556 1293 85 26 16 chr4 127293682 127293837 -28336283 - B2_Mm2 SINE B2 -40 155 2 6 1556 301 312 21 11 chr4 127293840 127293934 -28336186 - PB1D10 SINE Alu 0 117 23 6 1556 568 286 7 0 chr4 127294039 127294186 -28335934 - B1F SINE Alu -1 148 1 6 1556 195 162 0 0 chr4 127294186 127294223 -28335897 + CT-rich Low_complexity Low_complexity 2 38 0 6 1556 272 298 46 53 chr4 127294468 127294599 -28335521 - L3 LINE CR1 -801 3688 3559 6 1556 432 0 0 0 chr4 127295074 127295122 -28334998 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 6 1556 362 347 0 8 chr4 127295144 127295266 -28334854 - MER5A DNA MER1_type -68 121 1 6 1556 447 301 147 72 chr4 127295455 127295774 -28334346 - MLT1A LTR MaLR -6 368 26 6 1556 1160 244 66 64 chr4 127295972 127296362 -28333758 - MTD LTR MaLR -21 398 18 6 1556 477 0 0 0 chr4 127296415 127296468 -28333652 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1556 315 0 0 0 chr4 127296468 127296502 -28333618 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1556 187 206 0 0 chr4 127296618 127296652 -28333468 + MIRc SINE MIR 92 125 -143 6 1556 801 217 63 37 chr4 127296731 127296922 -28333198 + B3A SINE B2 1 196 -2 6 1556 701 251 51 28 chr4 127298060 127298277 -28331843 - Lx9 LINE L1 -161 7483 7262 6 1556 694 261 128 34 chr4 127298401 127298667 -28331453 + B4 SINE B4 1 291 -1 6 1556 277 367 0 0 chr4 127298670 127298768 -28331352 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1556 516 332 64 32 chr4 127298769 127299142 -28330978 + L1ME5 LINE L1 5767 6151 -43 6 1556 200 143 0 23 chr4 127299160 127299203 -28330917 + GA-rich Low_complexity Low_complexity 4 45 0 6 1556 1235 48 0 0 chr4 127299544 127299690 -28330430 - B1_Mus2 SINE Alu 0 147 2 6 1556 1277 239 50 7 chr4 127299783 127300065 -28330055 - MTEa LTR MaLR 0 379 86 6 1556 1086 215 24 19 chr4 127300074 127300287 -28329833 + B3 SINE B2 3 216 0 6 1556 247 274 80 64 chr4 127301883 127302008 -28328112 - MER5A DNA MER1_type -23 166 40 6 1556 347 326 37 0 chr4 127302540 127302675 -28327445 + MIR SINE MIR 31 170 -92 6 1556 21 0 0 0 chr4 127303121 127303142 -28326978 + GC_rich Low_complexity Low_complexity 1 21 0 6 1556 673 22 22 0 chr4 127303712 127303803 -28326317 + (GA)n Simple_repeat Simple_repeat 2 94 0 6 1556 216 292 54 27 chr4 127303960 127304034 -28326086 - L2c LINE L2 -57 3330 3255 6 1556 272 267 17 0 chr4 127304042 127304102 -28326018 + L2c LINE L2 3283 3343 -44 6 1556 775 326 51 13 chr4 127304116 127304430 -28325690 - ORSL-2a DNA Tip100 -16 326 1 6 1556 1283 250 134 3 chr4 127304731 127305052 -28325068 - ORR1D2 LTR MaLR -7 363 1 6 1556 838 258 27 18 chr4 127305176 127305397 -28324723 + ID_B1 SINE B4 2 224 0 6 1556 1112 260 109 47 chr4 127305561 127305858 -28324262 + MTE2a LTR MaLR 56 335 -35 6 1556 706 354 41 46 chr4 127306217 127306629 -28323491 + MER63B DNA AcHobo 27 436 0 6 1556 575 196 9 0 chr4 127306730 127306842 -28323278 - B3 SINE B2 -103 113 1 6 1556 608 388 110 47 chr4 127307446 127307768 -28322352 - MLT1N2 LTR MaLR -9 553 206 6 1556 789 172 240 6 chr4 127307768 127307943 -28322177 - B3 SINE B2 0 216 1 6 1556 608 388 110 47 chr4 127307943 127308093 -28322027 - MLT1N2 LTR MaLR -357 205 51 6 1556 267 304 13 0 chr4 127308275 127308354 -28321766 + ID4 SINE ID 2 81 -2 6 1556 459 0 0 0 chr4 127308394 127308445 -28321675 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1556 358 294 122 43 chr4 127308895 127309083 -28321037 - B4A SINE B4 -74 218 16 6 1556 323 304 98 16 chr4 127309101 127309285 -28320835 - L1MEf LINE L1 -4592 2510 2312 6 1556 398 96 0 0 chr4 127309288 127309340 -28320780 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 6 1556 770 170 23 0 chr4 127309340 127309511 -28320609 + CT-rich Low_complexity Low_complexity 3 177 0 6 1556 250 94 151 0 chr4 127309513 127309566 -28320554 + polypyrimidine Low_complexity Low_complexity 4 64 0 6 1556 813 184 0 0 chr4 127309566 127309729 -28320391 + CT-rich Low_complexity Low_complexity 3 165 0 6 1556 1916 233 88 18 chr4 127309796 127310299 -28319821 + RMER15 LTR ERVL 38 575 0 6 1556 567 341 50 50 chr4 127310321 127310719 -28319401 - L1MEf LINE L1 -4946 2156 1759 6 1556 1233 91 50 17 chr4 127310722 127310901 -28319219 - B2_Mm2 SINE B2 -9 186 2 6 1556 755 75 0 9 chr4 127310923 127311031 -28319089 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 6 1556 218 216 0 19 chr4 127311031 127311083 -28319037 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1556 930 242 0 6 chr4 127311083 127311266 -28318854 - B3A SINE B2 -16 182 1 6 1556 247 341 38 41 chr4 127311313 127311488 -28318632 - L1MEf LINE L1 -5370 1732 1579 6 1556 342 67 0 0 chr4 127311518 127311563 -28318557 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 1556 268 404 62 14 chr4 127312718 127312929 -28317191 + L2c LINE L2 3012 3232 -155 6 1556 236 282 115 26 chr4 127313212 127313325 -28316795 - LTR16E2 LTR ERVL -113 455 333 6 1556 1042 235 158 72 chr4 127313547 127313896 -28316224 - MTD LTR MaLR -14 386 20 6 1556 339 25 0 0 chr4 127314976 127315016 -28315104 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1556 625 79 17 26 chr4 127315097 127315214 -28314906 + (CA)n Simple_repeat Simple_repeat 2 117 0 6 1556 618 60 0 0 chr4 127315215 127315298 -28314822 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1556 202 300 88 0 chr4 127315791 127315871 -28314249 + MIR SINE MIR 90 176 -86 6 1556 184 276 52 0 chr4 127316099 127316157 -28313963 - MIRb SINE MIR -87 181 121 6 1556 279 0 0 0 chr4 127316268 127316299 -28313821 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 6 1556 558 217 61 0 chr4 127316304 127316419 -28313701 - B1_Mur2 SINE Alu -1 148 27 6 1556 1038 262 48 16 chr4 127316535 127316787 -28313333 + B4 SINE B4 12 271 -21 7 1556 438 20 0 0 chr4 127316797 127316848 -28313272 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1556 327 173 12 128 chr4 127316853 127316939 -28313181 + PB1D10 SINE Alu 41 116 -1 7 1556 320 284 0 0 chr4 127316948 127317029 -28313091 + ID2 SINE ID 2 82 -1 7 1556 267 377 6 33 chr4 127317306 127317553 -28312567 + CT-rich Low_complexity Low_complexity 1 240 0 7 1556 208 152 0 0 chr4 127319137 127319170 -28310950 + L2b LINE L2 3324 3356 -19 7 1556 283 308 198 48 chr4 127319607 127319774 -28310346 + MER2 DNA MER2_type 86 277 -68 7 1556 311 279 53 18 chr4 127319825 127319938 -28310182 - MIRc SINE MIR -99 169 53 7 1556 198 0 0 0 chr4 127321543 127321565 -28308555 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1556 396 0 0 0 chr4 127321571 127321615 -28308505 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1556 1018 241 38 122 chr4 127321665 127322057 -28308063 - ORR1E LTR MaLR 0 359 1 7 1556 201 255 0 52 chr4 127322700 127322758 -28307362 + GA-rich Low_complexity Low_complexity 2 56 0 7 1556 774 72 108 0 chr4 127323244 127323355 -28306765 - Lx3A LINE L1 -350 6631 6509 7 1556 490 245 29 0 chr4 127323788 127323890 -28306230 + ID_B1 SINE B4 114 218 -6 7 1556 840 239 20 10 chr4 127324182 127324381 -28305739 - B3 SINE B2 -13 203 3 7 1556 1170 297 86 38 chr4 127324419 127324939 -28305181 - MER97c DNA MER1_type? -429 661 117 7 1556 692 316 0 6 chr4 127324939 127325111 -28305009 + B3A SINE B2 1 171 -27 7 1556 264 267 40 0 chr4 127325267 127325342 -28304778 + L3 LINE CR1 4286 4363 -126 7 1556 268 152 22 0 chr4 127325345 127325391 -28304729 + L3 LINE CR1 4442 4488 -1 7 1556 441 280 99 83 chr4 127326654 127326936 -28303184 - ORR1E LTR MaLR -1 358 30 7 1556 519 377 16 12 chr4 127327071 127327326 -28302794 + MIR SINE MIR 6 261 -1 7 1556 297 373 74 23 chr4 127327369 127327423 -28302697 + Charlie7 DNA MER1_type 56 117 -2495 7 1556 1038 95 0 0 chr4 127327423 127327571 -28302549 + (CAAGG)n Simple_repeat Simple_repeat 1 148 0 7 1556 297 373 74 23 chr4 127327571 127327733 -28302387 + Charlie7 DNA MER1_type 118 283 -2329 7 1556 484 243 95 89 chr4 127327861 127328051 -28302069 + Charlie7 DNA MER1_type 1591 1781 -831 7 1556 198 0 0 0 chr4 127328051 127328073 -28302047 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1556 526 284 77 5 chr4 127328077 127328272 -28301848 + Charlie7 DNA MER1_type 1769 1977 -635 7 1556 387 244 90 16 chr4 127328274 127328441 -28301679 + B4A SINE B4 1 236 -56 7 1556 1943 183 69 27 chr4 127328441 127328845 -28301275 + MTC LTR MaLR 1 421 0 7 1556 358 268 113 21 chr4 127328845 127328879 -28301241 + B4A SINE B4 237 267 -25 7 1556 852 296 47 26 chr4 127328878 127329222 -28300898 + Charlie7 DNA MER1_type 1995 2345 -267 7 1556 216 326 36 50 chr4 127329662 127329801 -28300319 + L2c LINE L2 3066 3202 -185 7 1556 597 217 47 34 chr4 127329868 127330016 -28300104 + RSINE1 SINE B4 16 165 0 7 1556 21 0 0 0 chr4 127330048 127330069 -28300051 + AT_rich Low_complexity Low_complexity 1 21 0 7 1556 400 225 0 12 chr4 127330071 127330152 -28299968 - PB1D10 SINE Alu -22 95 16 7 1556 578 275 205 0 chr4 127330276 127330447 -28299673 - ID_B1 SINE B4 -7 217 12 7 1556 345 255 153 41 chr4 127330493 127330609 -28299511 - L1MA4 LINE L1 -6 6294 6170 7 1556 2254 167 55 8 chr4 127330609 127331008 -28299112 + MTD LTR MaLR 2 419 0 7 1556 345 255 153 41 chr4 127331008 127331087 -28299033 - L1MA4 LINE L1 -131 6169 6078 7 1556 410 328 62 22 chr4 127331208 127331386 -28298734 + MER102a DNA MER1_type 59 243 -87 7 1556 230 380 8 8 chr4 127331864 127331986 -28298134 - LTR16E2 LTR ERVL -1 567 446 7 1556 272 369 50 22 chr4 127333562 127333742 -28296378 - LTR16E2 LTR ERVL -1 567 383 7 1556 362 21 21 0 chr4 127334124 127334171 -28295949 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1556 213 269 36 60 chr4 127334861 127334944 -28295176 - MIRb SINE MIR 0 268 188 7 1556 477 0 0 0 chr4 127335227 127335280 -28294840 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1556 761 267 63 13 chr4 127335438 127335653 -28294467 - ID_B1 SINE B4 0 224 1 7 1556 584 250 33 46 chr4 127335759 127335910 -28294210 - RSINE1 SINE B4 0 165 17 7 1556 581 325 123 60 chr4 127336270 127336604 -28293516 - ORR1E LTR MaLR -4 355 1 7 1556 288 278 14 0 chr4 127337621 127337693 -28292427 + GA-rich Low_complexity Low_complexity 3 75 0 7 1556 636 106 0 0 chr4 127338065 127338159 -28291961 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1556 493 241 27 36 chr4 127338281 127338393 -28291727 + PB1D10 SINE Alu 2 112 -5 7 1556 187 184 53 0 chr4 127338553 127338591 -28291529 + MIRm SINE MIR 104 143 -133 7 1556 725 248 47 0 chr4 127338862 127339011 -28291109 + B3A SINE B2 1 156 -42 7 1556 252 0 0 0 chr4 127339015 127339043 -28291077 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1556 4348 172 66 39 chr4 127339053 127339918 -28290202 - RMER19B LTR ERVK -14 888 1 7 1556 521 268 68 31 chr4 127339978 127340140 -28289980 + Lx8 LINE L1 7069 7236 -237 7 1556 23 54 0 0 chr4 127340174 127340211 -28289909 + AT_rich Low_complexity Low_complexity 1 37 0 7 1556 366 269 182 24 chr4 127340507 127340720 -28289400 + MIR SINE MIR 17 267 -1 7 1556 183 330 43 21 chr4 127340725 127340818 -28289302 + L2a LINE L2 3332 3426 0 7 1556 239 233 0 0 chr4 127341857 127341900 -28288220 - MIRc SINE MIR -115 153 111 7 1556 1145 216 9 14 chr4 127341955 127342171 -28287949 + B3 SINE B2 1 215 -1 7 1556 767 109 29 0 chr4 127342333 127342471 -28287649 + (CCTA)n Simple_repeat Simple_repeat 1 142 0 7 1556 395 155 0 12 chr4 127342474 127342559 -28287561 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1556 561 273 30 0 chr4 127342590 127342722 -28287398 - RSINE1 SINE B4 -17 148 13 7 1556 364 298 128 45 chr4 127342774 127342953 -28287167 + RMER30 DNA MER1_type 9 202 0 7 1556 391 355 57 9 chr4 127343932 127344121 -28285999 + MLT1F2 LTR MaLR 297 505 -55 7 1556 1544 244 64 27 chr4 127344410 127344814 -28285306 - MTD LTR MaLR 0 419 1 7 1556 516 255 27 47 chr4 127345999 127346147 -28283973 - MER5A DNA MER1_type -6 183 39 7 1556 334 244 54 46 chr4 127346172 127346315 -28283805 + B4 SINE B4 34 228 -64 7 1556 231 114 0 0 chr4 127346497 127346532 -28283588 + (CAA)n Simple_repeat Simple_repeat 1 35 0 7 1556 553 314 29 43 chr4 127347595 127347855 -28282265 + MIR SINE MIR 2 266 -2 7 1556 1476 211 152 6 chr4 127348048 127348410 -28281710 + MTD LTR MaLR 1 415 -4 7 1556 414 326 120 17 chr4 127348451 127348626 -28281494 + MT2A LTR ERVL 330 522 -11 7 1556 342 361 0 16 chr4 127348704 127348828 -28281292 - MIRc SINE MIR -116 152 31 7 1556 1350 242 13 64 chr4 127349005 127349380 -28280740 - ORR1E LTR MaLR -2 357 2 7 1556 727 279 204 53 chr4 127351054 127351344 -28278776 + MLT1D LTR MaLR 1 354 -151 7 1556 971 182 25 102 chr4 127351344 127351589 -28278531 - URR1A DNA MER1_type 0 226 1 7 1556 727 279 204 53 chr4 127351589 127351729 -28278391 + MLT1D LTR MaLR 355 496 -9 7 1556 521 237 0 0 chr4 127352512 127352609 -28277511 + MER5A DNA MER1_type 18 114 -75 7 1556 512 250 147 52 chr4 127353969 127354221 -28275899 + B4A SINE B4 2 282 -10 7 1556 276 149 0 0 chr4 127354339 127354386 -28275734 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1556 309 51 0 0 chr4 127354705 127354744 -28275376 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1556 528 310 177 13 chr4 127354789 127355021 -28275099 - B4A SINE B4 -21 271 2 7 1556 503 151 33 44 chr4 127355071 127355161 -28274959 + B1_Mus2 SINE Alu 59 147 0 7 1556 443 317 81 38 chr4 127355368 127355738 -28274382 - HAL1 LINE L1 -712 1795 1410 7 1556 902 176 19 63 chr4 127355802 127356008 -28274112 - B3A SINE B2 0 198 2 7 1556 717 194 93 93 chr4 127357307 127357523 -28272597 + B3 SINE B2 1 216 0 7 1556 231 271 0 17 chr4 127358603 127358663 -28271457 + CT-rich Low_complexity Low_complexity 1 59 0 7 1556 396 0 0 0 chr4 127359079 127359123 -28270997 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1556 904 262 85 8 chr4 127359138 127359288 -28270832 - B4 SINE B4 -26 266 113 7 1556 459 0 0 0 chr4 127359288 127359339 -28270781 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1556 904 262 85 8 chr4 127359339 127359434 -28270686 - B4 SINE B4 -180 112 2 7 1556 383 68 0 17 chr4 127360229 127360289 -28269831 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1556 378 120 0 0 chr4 127360289 127360364 -28269756 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 1556 271 326 70 105 chr4 127360534 127360904 -28269216 + ORR1E LTR MaLR 1 357 -2 7 1556 848 258 71 0 chr4 127361210 127361392 -28268728 + MER47B DNA MER2_type 33 227 -191 7 1556 290 280 26 13 chr4 127361457 127361533 -28268587 - ID4_ SINE ID -6 77 1 7 1556 410 283 78 21 chr4 127361534 127361675 -28268445 - B1F SINE Alu 0 149 1 7 1556 238 245 0 0 chr4 127361686 127361735 -28268385 + C-rich Low_complexity Low_complexity 3 51 0 7 1556 716 243 26 0 chr4 127361735 127361887 -28268233 - B4A SINE B4 -14 278 123 7 1556 194 148 0 18 chr4 127361906 127361961 -28268159 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 1556 411 244 26 0 chr4 127361989 127362067 -28268053 - B4A SINE B4 -207 85 6 7 1556 1249 230 55 22 chr4 127362581 127362892 -28267228 - MTC LTR MaLR -44 377 57 7 1556 712 251 23 41 chr4 127363938 127364158 -28265962 - B3 SINE B2 0 216 1 7 1556 926 156 6 0 chr4 127364541 127364714 -28265406 + G-rich Low_complexity Low_complexity 5 178 0 7 1556 412 306 30 53 chr4 127364723 127364854 -28265266 - RSINE1 SINE B4 -30 135 8 7 1556 604 307 24 14 chr4 127365306 127365514 -28264606 + B4A SINE B4 1 210 -82 7 1556 428 128 0 13 chr4 127365583 127365662 -28264458 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1556 255 269 97 53 chr4 127365770 127365884 -28264236 - L2a LINE L2 0 3426 3308 7 1556 266 309 152 17 chr4 127366188 127366366 -28263754 + MIRb SINE MIR 59 260 -8 8 1556 432 37 0 0 chr4 127369876 127369930 -28260190 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1556 827 223 48 21 chr4 127369930 127370081 -28260039 - B3 SINE B2 -23 193 39 8 1556 450 0 0 0 chr4 127370081 127370131 -28259989 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1556 827 223 48 21 chr4 127370131 127370167 -28259953 - B3 SINE B2 -178 38 1 8 1556 338 180 326 0 chr4 127370681 127370770 -28259350 + RMER15 LTR ERVL 458 575 0 8 1556 268 374 8 39 chr4 127370915 127371043 -28259077 - MIRb SINE MIR -65 203 80 8 1556 1139 68 0 33 chr4 127371112 127371263 -28258857 - B1_Mus2 SINE Alu 0 147 2 8 1556 230 341 179 24 chr4 127372029 127372197 -28257923 - MLT1A LTR MaLR -178 196 3 8 1556 659 280 57 100 chr4 127372497 127372687 -28257433 + ID_B1 SINE B4 56 246 -46 8 1556 321 197 0 0 chr4 127372717 127372788 -28257332 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 8 1556 276 274 39 18 chr4 127373722 127373832 -28256288 - MLT1D LTR MaLR -19 486 345 8 1556 1340 154 0 26 chr4 127373847 127374073 -28256047 + URR1B DNA MER1_type 6 225 0 8 1556 693 185 12 196 chr4 127374333 127374501 -28255619 - B3 SINE B2 0 216 53 8 1556 261 0 0 0 chr4 127374595 127374624 -28255496 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 8 1556 766 305 4 8 chr4 127374630 127374878 -28255242 - Lx7 LINE L1 -388 7308 7062 8 1556 632 149 28 0 chr4 127374903 127375044 -28255076 + (TA)n Simple_repeat Simple_repeat 1 145 0 8 1556 657 38 0 0 chr4 127375102 127375182 -28254938 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 1556 492 232 184 0 chr4 127375183 127375308 -28254812 - RSINE1 SINE B4 -5 160 13 8 1556 231 250 132 94 chr4 127375353 127375512 -28254608 - L2b LINE L2 -186 3189 3025 8 1556 204 319 194 4 chr4 127375628 127375870 -28254250 - L2b LINE L2 -556 2863 2576 8 1556 1415 149 4 18 chr4 127376352 127376578 -28253542 - URR1B DNA MER1_type -2 223 1 8 1556 269 308 26 0 chr4 127376903 127376981 -28253139 - MIRb SINE MIR -103 165 86 8 1556 315 0 0 0 chr4 127377099 127377134 -28252986 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 1556 354 23 0 0 chr4 127377134 127377177 -28252943 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1556 487 315 5 47 chr4 127377187 127377377 -28252743 - B3A SINE B2 -16 182 1 8 1556 291 339 59 34 chr4 127377468 127377792 -28252328 - L1ME5 LINE L1 -22 6172 5841 8 1556 243 0 0 0 chr4 127378755 127378782 -28251338 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1556 318 279 185 83 chr4 127379054 127379308 -28250812 - MLT1I LTR MaLR -14 535 256 8 1556 324 0 0 0 chr4 127380346 127380382 -28249738 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1556 336 102 0 0 chr4 127380531 127380580 -28249540 + (TATG)n Simple_repeat Simple_repeat 4 52 0 8 1556 690 24 0 0 chr4 127381055 127381139 -28248981 + (TC)n Simple_repeat Simple_repeat 1 84 0 8 1556 433 328 85 28 chr4 127381802 127382050 -28248070 - MLT1I LTR MaLR -141 270 9 8 1556 564 238 156 37 chr4 127382304 127382522 -28247598 + LTR89 LTR ERVL? 1 244 -635 8 1556 231 36 0 0 chr4 127382863 127382891 -28247229 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1556 1955 159 68 31 chr4 127382891 127383274 -28246846 + MTD LTR MaLR 15 411 -8 8 1556 867 247 52 132 chr4 127383794 127384166 -28245954 - ORR1E LTR MaLR 0 379 9 8 1556 452 326 96 77 chr4 127384517 127384893 -28245227 - MLT2C1 LTR ERVL 0 397 15 8 1556 296 257 157 28 chr4 127385119 127385227 -28244893 + MIRb SINE MIR 93 214 -54 8 1556 186 329 37 0 chr4 127385937 127386019 -28244101 - MIR SINE MIR -29 233 149 8 1556 257 316 8 33 chr4 127386876 127386997 -28243123 + GA-rich Low_complexity Low_complexity 2 119 0 8 1556 277 290 9 57 chr4 127387450 127387556 -28242564 - Charlie1a DNA MER1_type -41 1414 1314 8 1556 186 71 0 0 chr4 127387964 127387992 -28242128 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1556 659 215 38 57 chr4 127388965 127389177 -28240943 - LTR78 LTR ERV1 -59 1245 1038 8 1556 221 306 141 0 chr4 127389890 127389975 -28240145 - PB1D7 SINE Alu -2 118 22 8 1556 270 0 0 0 chr4 127390523 127390553 -28239567 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1556 256 346 121 18 chr4 127391132 127391579 -28238541 - L1ME3B LINE L1 -179 6061 5569 8 1556 298 340 47 0 chr4 127391749 127391899 -28238221 + MLT1D LTR MaLR 89 245 -260 8 1556 334 279 195 8 chr4 127391924 127392047 -28238073 + MLT1D LTR MaLR 323 468 -37 8 1556 500 283 110 67 chr4 127392197 127392513 -28237607 - MLT1A0 LTR MaLR -29 379 8 8 1556 200 220 55 9 chr4 127393281 127393391 -28236729 + GA-rich Low_complexity Low_complexity 1 115 0 8 1556 227 307 40 87 chr4 127393760 127393865 -28236255 + MLT1J1 LTR MaLR 299 403 -41 8 1556 297 0 0 0 chr4 127393865 127393898 -28236222 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 8 1556 227 307 40 87 chr4 127393898 127393942 -28236178 + MLT1J1 LTR MaLR 404 441 -3 8 1556 252 0 0 0 chr4 127394091 127394119 -28236001 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 1556 378 0 0 0 chr4 127394122 127394164 -28235956 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1556 597 342 4 22 chr4 127394292 127394522 -28235598 - B4 SINE B4 -63 229 4 8 1556 21 0 0 0 chr4 127395272 127395293 -28234827 + AT_rich Low_complexity Low_complexity 1 21 0 8 1556 326 326 62 0 chr4 127395470 127395614 -28234506 + MIR SINE MIR 39 191 -71 8 1556 530 344 21 25 chr4 127396168 127396442 -28233678 - MLT2B1 LTR ERVL -5 549 229 8 1556 213 39 0 0 chr4 127396530 127396556 -28233564 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1556 415 280 142 6 chr4 127396648 127396824 -28233296 - MLT2B1 LTR ERVL -309 211 12 8 1556 790 240 237 15 chr4 127396868 127397198 -28232922 + MTD LTR MaLR 3 405 -14 8 1556 424 211 269 0 chr4 127397283 127397432 -28232688 + B3 SINE B2 1 189 -27 8 1556 329 259 43 22 chr4 127397676 127397814 -28232306 + Helitron1Nb_Mam RC Helitron 968 1108 -8 8 1556 384 221 11 0 chr4 127398212 127398307 -28231813 + Lx9 LINE L1 7548 7643 -1 8 1556 189 74 0 0 chr4 127398426 127398453 -28231667 + (GA)n Simple_repeat Simple_repeat 1 27 0 8 1556 809 360 33 27 chr4 127398493 127398859 -28231261 - Lx8 LINE L1 -143 7330 6963 8 1556 3567 130 33 10 chr4 127398891 127399497 -28230623 + L1_Mur2 LINE L1 2608 3227 -2650 8 1556 21 57 0 0 chr4 127399963 127399998 -28230122 + AT_rich Low_complexity Low_complexity 1 35 0 8 1556 237 291 171 23 chr4 127400819 127400995 -28229125 - ORR1E LTR MaLR 0 359 158 8 1556 360 276 17 17 chr4 127401513 127401631 -28228489 - MTEa LTR MaLR -3 376 259 8 1556 246 294 2 0 chr4 127401846 127401926 -28228194 - MLT2B5 LTR ERVL -473 81 1 8 1557 1693 31 0 0 chr4 127401988 127402180 -28227940 + B2_Mm1a SINE B2 2 193 0 8 1557 810 337 197 40 chr4 127402208 127402920 -28227200 + L1MDa LINE L1 28 851 -5782 8 1557 248 246 98 53 chr4 127402951 127403084 -28227036 + L1MDa LINE L1 828 966 -5667 8 1557 261 83 0 0 chr4 127403138 127403174 -28226946 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 8 1557 3349 244 106 51 chr4 127403174 127404702 -28225418 + L1MDa LINE L1 2323 3995 -2542 8 1557 261 0 0 0 chr4 127404702 127404731 -28225389 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1557 3349 250 105 63 chr4 127404731 127404953 -28225167 + L1MDa LINE L1 3996 4163 -2374 8 1557 458 33 17 0 chr4 127405264 127405324 -28224796 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1557 465 19 0 0 chr4 127405324 127405377 -28224743 + (GA)n Simple_repeat Simple_repeat 2 55 0 8 1557 874 273 70 36 chr4 127405377 127405737 -28224383 - Lx7 LINE L1 -364 5936 5567 8 1557 1083 183 38 9 chr4 127405850 127406060 -28224060 - B3 SINE B2 0 216 1 8 1557 272 264 0 44 chr4 127406063 127406154 -28223966 + CT-rich Low_complexity Low_complexity 4 90 0 8 1557 1749 278 77 26 chr4 127406162 127406880 -28223240 - L1MCa LINE L1 -1886 4435 3682 8 1557 508 311 0 7 chr4 127406915 127407064 -28223056 - ID_B1 SINE B4 -1 223 76 8 1557 2101 268 39 33 chr4 127407065 127407891 -28222229 - L1MCa LINE L1 -2631 3690 2860 8 1557 537 313 33 33 chr4 127407949 127408190 -28221930 - MER2 DNA MER2_type -103 242 2 8 1557 812 245 78 20 chr4 127408305 127408509 -28221611 - B3 SINE B2 0 216 1 8 1557 425 71 14 0 chr4 127408587 127408657 -28221463 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1557 471 18 0 0 chr4 127408657 127408712 -28221408 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1557 480 261 57 79 chr4 127408784 127409188 -28220932 - L1MCa LINE L1 -5030 1478 1084 8 1557 919 231 10 10 chr4 127409935 127410136 -28219984 - B3 SINE B2 0 216 16 8 1557 513 198 54 4 chr4 127410315 127410445 -28219675 - L1M5 LINE L1 -2263 5522 5389 8 1557 296 212 120 10 chr4 127411277 127411363 -28218757 + B4 SINE B4 1 99 -66 8 1557 299 275 139 84 chr4 127411369 127411643 -28218477 + B4 SINE B4 2 290 -2 8 1557 357 277 21 55 chr4 127412696 127412841 -28217279 - MLT1A1 LTR MaLR 0 408 269 8 1557 2216 93 12 61 chr4 127414502 127414844 -28215276 + ORR1A2 LTR MaLR 1 325 -2 8 1557 601 201 115 52 chr4 127415490 127415685 -28214435 - MTD LTR MaLR -18 401 211 8 1557 765 318 0 47 chr4 127415669 127415923 -28214197 - B4 SINE B4 -49 243 2 8 1557 483 277 15 0 chr4 127416522 127416652 -28213468 + ID_B1 SINE B4 86 217 -7 8 1557 229 192 77 0 chr4 127416607 127416659 -28213461 + PB1D7 SINE Alu 65 120 0 8 1557 252 86 0 0 chr4 127416756 127416791 -28213329 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 8 1557 1234 234 69 29 chr4 127416980 127417359 -28212761 + MTD LTR MaLR 11 404 -15 8 1557 340 318 63 39 chr4 127417485 127417691 -28212429 + L1M5 LINE L1 4498 4708 -1438 8 1557 554 276 117 56 chr4 127418130 127418490 -28211630 + RLTR14 LTR ERV1 1 382 0 8 1557 203 227 0 26 chr4 127418570 127418647 -28211473 + (CATA)n Simple_repeat Simple_repeat 3 77 0 8 1557 648 270 30 18 chr4 127418851 127419017 -28211103 + B4 SINE B4 46 213 -79 8 1557 2600 139 36 2 chr4 127419038 127419449 -28210671 - Lx4A LINE L1 -1 7057 6633 8 1557 223 340 9 54 chr4 127419770 127419882 -28210238 - MIRb SINE MIR -37 231 125 8 1557 207 286 18 0 chr4 127420072 127420128 -28209992 + GA-rich Low_complexity Low_complexity 4 60 0 9 1557 413 237 91 28 chr4 127421287 127421430 -28208690 - RSINE1 SINE B4 -2 163 12 9 1557 264 122 0 0 chr4 127421462 127421503 -28208617 + (ATG)n Simple_repeat Simple_repeat 2 42 0 9 1557 497 267 8 0 chr4 127421532 127421652 -28208468 + B1F SINE Alu 29 149 0 9 1557 186 133 0 0 chr4 127421652 127421682 -28208438 + (GGA)n Simple_repeat Simple_repeat 3 32 0 9 1557 396 331 13 19 chr4 127421694 127421851 -28208269 + GA-rich Low_complexity Low_complexity 1 156 0 9 1557 785 284 86 41 chr4 127422742 127423080 -28207040 - ORR1E LTR MaLR -5 354 2 9 1557 528 186 0 0 chr4 127423658 127423825 -28206295 + CT-rich Low_complexity Low_complexity 1 167 0 9 1557 275 350 69 0 chr4 127424214 127424374 -28205746 - MIR SINE MIR -90 172 2 9 1557 1506 48 27 0 chr4 127424920 127425107 -28205013 + B2_Mm2 SINE B2 2 193 -2 9 1557 311 249 26 20 chr4 127425747 127425858 -28204262 + MIRc SINE MIR 34 146 -130 9 1557 351 0 0 0 chr4 127426037 127426076 -28204044 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1557 482 274 36 55 chr4 127427536 127427756 -28202364 + MLT1D LTR MaLR 5 220 -285 9 1557 357 276 42 33 chr4 127427812 127427932 -28202188 + MLT1D LTR MaLR 318 438 -67 9 1557 270 0 0 0 chr4 127427943 127427973 -28202147 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1557 837 275 63 8 chr4 127428055 127428293 -28201827 - B4A SINE B4 -22 270 20 9 1557 1048 277 50 18 chr4 127429141 127429479 -28200641 - ORSL-2b DNA Tip100 0 508 160 9 1557 206 200 0 0 chr4 127429563 127429598 -28200522 + polypyrimidine Low_complexity Low_complexity 2 36 0 9 1557 380 259 8 28 chr4 127429598 127429853 -28200267 + CT-rich Low_complexity Low_complexity 1 249 0 9 1557 586 286 123 49 chr4 127429897 127430302 -28199818 - RLTR12B LTR ERVK -42 486 52 9 1557 750 291 26 11 chr4 127430332 127430523 -28199597 - ID_B1 SINE B4 -23 201 8 9 1557 552 252 64 45 chr4 127430533 127430753 -28199367 - ID_B1 SINE B4 0 224 1 9 1557 475 357 33 78 chr4 127432341 127432675 -28197445 + MLT1J LTR MaLR 20 338 -174 9 1557 240 282 86 112 chr4 127432727 127432843 -28197277 - PB1D7 SINE Alu 0 120 8 9 1557 731 310 48 48 chr4 127433527 127433818 -28196302 + B4A SINE B4 1 291 -1 9 1557 726 233 87 15 chr4 127434225 127434421 -28195699 - B3 SINE B2 -5 211 2 9 1557 909 201 42 38 chr4 127435204 127435416 -28194704 + ID_B1 SINE B4 1 213 -11 9 1557 2072 117 0 0 chr4 127435416 127435732 -28194388 - ORR1A2 LTR MaLR -11 316 1 9 1557 268 256 29 50 chr4 127435744 127435758 -28194362 + MER53 DNA hAT 24 35 -158 9 1557 1127 202 0 9 chr4 127435758 127435968 -28194152 + B3 SINE B2 1 208 -8 9 1557 268 256 29 50 chr4 127435968 127436093 -28194027 + MER53 DNA hAT 36 160 -33 9 1557 349 217 132 0 chr4 127436150 127436256 -28193864 + L1MA4 LINE L1 5793 5912 -388 9 1557 213 245 0 0 chr4 127436441 127436494 -28193626 + MIR SINE MIR 168 220 -42 9 1557 243 299 0 25 chr4 127436875 127436954 -28193166 + MLT1A1 LTR MaLR 320 396 -12 9 1557 255 254 0 16 chr4 127437385 127437449 -28192671 + MLT1A1 LTR MaLR 346 408 0 9 1557 671 253 9 18 chr4 127438937 127439109 -28191011 + B4 SINE B4 2 171 -121 9 1557 496 65 13 13 chr4 127439116 127439194 -28190926 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1557 180 0 0 0 chr4 127439742 127439762 -28190358 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1557 32 0 0 0 chr4 127440431 127440463 -28189657 + AT_rich Low_complexity Low_complexity 1 32 0 9 1557 276 100 0 0 chr4 127440481 127440521 -28189599 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 9 1557 690 245 6 0 chr4 127440522 127440681 -28189439 - B3A SINE B2 -38 160 1 9 1557 408 111 0 0 chr4 127441317 127441380 -28188740 + (TCC)n Simple_repeat Simple_repeat 1 63 0 9 1557 744 260 264 10 chr4 127441924 127442223 -28187897 + MTE2b LTR MaLR 1 375 -4 9 1557 3824 197 14 74 chr4 127442326 127442911 -28187209 + Lx2B LINE L1 6150 6732 -268 9 1557 1121 90 0 0 chr4 127442911 127443056 -28187064 + B1_Mus1 SINE Alu 2 146 -2 9 1557 3824 197 14 74 chr4 127443056 127443357 -28186763 + Lx2B LINE L1 6733 6982 -18 9 1557 216 369 56 14 chr4 127443707 127443850 -28186270 - L3 LINE CR1 -1148 3341 3193 9 1557 345 62 0 0 chr4 127443888 127443936 -28186184 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1557 440 333 8 8 chr4 127444406 127444530 -28185590 + B3A SINE B2 14 137 -61 9 1557 602 315 91 68 chr4 127445364 127445660 -28184460 + MLT1L LTR MaLR 275 577 -33 9 1557 281 245 0 0 chr4 127446802 127446851 -28183269 + Lx8 LINE L1 7276 7324 -149 9 1557 622 268 172 0 chr4 127447182 127447380 -28182740 + Lx8 LINE L1 6779 7010 -463 9 1557 751 244 22 156 chr4 127447400 127447721 -28182399 + Lx8 LINE L1 7192 7469 -4 9 1557 905 293 141 23 chr4 127447818 127448491 -28181629 + L1ME4a LINE L1 5109 5860 -264 9 1557 239 297 10 29 chr4 127448553 127448657 -28181463 + (TATATG)n Simple_repeat Simple_repeat 1 102 0 9 1557 488 202 17 17 chr4 127448660 127448836 -28181284 + (TATG)n Simple_repeat Simple_repeat 3 178 0 9 1557 245 200 0 0 chr4 127448850 127448895 -28181225 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 9 1557 410 215 6 30 chr4 127448900 127449068 -28181052 + (TATG)n Simple_repeat Simple_repeat 1 164 0 9 1557 370 193 94 63 chr4 127449082 127449209 -28180911 + L1ME4a LINE L1 5994 6124 0 9 1557 22 0 0 0 chr4 127449794 127449816 -28180304 + AT_rich Low_complexity Low_complexity 1 22 0 9 1557 518 270 5 33 chr4 127449884 127450068 -28180052 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 9 1557 243 255 21 0 chr4 127450116 127450163 -28179957 - LTR88b LTR Gypsy? -787 50 3 9 1557 181 369 0 0 chr4 127450176 127450241 -28179879 - MIRm SINE MIR -123 153 89 9 1557 313 316 89 45 chr4 127451492 127451680 -28178440 - MIRb SINE MIR -27 241 53 9 1557 282 274 58 23 chr4 127451946 127452032 -28178088 + ORR1E LTR MaLR 4 92 -267 9 1557 297 267 36 45 chr4 127452010 127452120 -28178000 - ORR1D2 LTR MaLR -135 235 127 9 1557 229 274 0 0 chr4 127452247 127452298 -28177822 + ORR1E LTR MaLR 255 305 -74 9 1557 1199 235 55 90 chr4 127452308 127452687 -28177433 + ORR1D2 LTR MaLR 1 366 -4 9 1557 252 0 0 0 chr4 127452726 127452754 -28177366 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1557 378 129 0 0 chr4 127453412 127453474 -28176646 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 9 1557 257 333 33 33 chr4 127454421 127454511 -28175609 - MLT1I LTR MaLR -3 408 319 9 1557 711 233 8 0 chr4 127454753 127454886 -28175234 + B1_Mur1 SINE Alu 1 134 -15 9 1557 339 25 0 0 chr4 127454889 127454929 -28175191 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1557 1069 223 83 25 chr4 127455247 127455523 -28174597 - B4 SINE B4 0 292 1 9 1557 230 307 235 20 chr4 127455593 127455789 -28174331 + MIRb SINE MIR 29 266 -2 9 1557 466 272 28 35 chr4 127456446 127456587 -28173533 + ORR1E LTR MaLR 1 140 -219 9 1557 360 0 0 0 chr4 127457086 127457126 -28172994 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1557 203 359 105 19 chr4 127457853 127457958 -28172162 - MIR SINE MIR -30 232 119 9 1557 787 249 53 16 chr4 127458681 127458869 -28171251 - B4A SINE B4 0 292 98 9 1557 234 282 129 64 chr4 127459732 127459872 -28170248 - L1M5 LINE L1 -482 5758 5610 9 1557 333 0 0 0 chr4 127461805 127461842 -28168278 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1557 710 273 14 14 chr4 127461865 127462009 -28168111 - RSINE1 SINE B4 -19 146 2 9 1557 358 351 22 7 chr4 127463115 127463250 -28166870 - MIR SINE MIR -35 227 91 9 1557 189 286 13 0 chr4 127463302 127463379 -28166741 + L2c LINE L2 3001 3078 -309 9 1557 505 298 180 51 chr4 127463747 127464041 -28166079 + MLT1J2 LTR MaLR 80 411 -37 9 1557 423 0 0 0 chr4 127464347 127464394 -28165726 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1557 324 339 129 43 chr4 127464406 127464660 -28165460 - L2a LINE L2 -264 3162 2882 9 1557 1385 239 21 0 chr4 127464725 127465010 -28165110 - Lx5 LINE L1 -250 6800 6510 9 1557 261 333 47 33 chr4 127465227 127465438 -28164682 - L1MC4a LINE L1 -1975 5907 5694 9 1557 240 282 130 43 chr4 127465552 127465667 -28164453 - MIRb SINE MIR 0 268 144 9 1557 562 313 18 50 chr4 127465681 127465963 -28164157 - B4A SINE B4 -18 274 2 9 1557 214 376 39 16 chr4 127465963 127466090 -28164030 - MIRb SINE MIR -110 158 29 9 1557 209 222 0 0 chr4 127466809 127466854 -28163266 + A-rich Low_complexity Low_complexity 1 45 0 9 1557 701 191 0 11 chr4 127467228 127467408 -28162712 + (TTCA)n Simple_repeat Simple_repeat 2 179 0 9 1557 22 88 0 0 chr4 127467897 127467954 -28162166 + AT_rich Low_complexity Low_complexity 1 57 0 9 1557 304 143 29 0 chr4 127467954 127468024 -28162096 + (TA)n Simple_repeat Simple_repeat 2 73 0 9 1557 482 282 39 28 chr4 127468027 127468206 -28161914 - B3A SINE B2 -16 182 2 9 1557 528 329 66 12 chr4 127468807 127469050 -28161070 + MIR SINE MIR 7 262 0 9 1557 293 62 15 44 chr4 127470241 127470309 -28159811 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 9 1557 891 242 22 31 chr4 127470309 127470535 -28159585 - B4 SINE B4 -67 225 2 9 1557 1373 108 0 5 chr4 127470555 127470742 -28159378 + B2_Mm2 SINE B2 1 186 -9 9 1557 1157 58 0 0 chr4 127471012 127471149 -28158971 + B1_Mus2 SINE Alu 1 137 -10 9 1557 231 341 62 8 chr4 127471204 127471334 -28158786 + MIRc SINE MIR 26 162 -106 9 1557 463 340 27 47 chr4 127471413 127471669 -28158451 - ORR1E LTR MaLR -108 251 1 9 1557 297 327 167 49 chr4 127471698 127472165 -28157955 - MLT1F1 LTR MaLR -9 560 39 9 1557 471 184 119 0 chr4 127472921 127473030 -28157090 + Lx8 LINE L1 6974 7095 -378 9 1557 355 292 10 0 chr4 127473043 127473139 -28156981 + Lx8 LINE L1 7011 7107 -366 9 1557 269 332 41 78 chr4 127473499 127473718 -28156402 + L2b LINE L2 3216 3426 0 1 1557 209 271 0 0 chr4 127474181 127474229 -28155891 + CT-rich Low_complexity Low_complexity 5 52 0 1 1557 688 349 101 26 chr4 127474229 127474655 -28155465 + MLT1H LTR MaLR 37 494 -55 1 1557 723 250 81 6 chr4 127474728 127474901 -28155219 - B4A SINE B4 0 292 107 1 1557 666 85 0 0 chr4 127474908 127475002 -28155118 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1557 487 257 2 21 chr4 127475059 127475206 -28154914 - B4A SINE B4 -154 138 1 1 1557 1257 216 93 56 chr4 127475888 127476211 -28153909 + ORR1E LTR MaLR 1 335 -24 1 1557 2106 211 5 23 chr4 127476311 127476738 -28153382 - MTC LTR MaLR 0 421 3 1 1557 592 291 21 26 chr4 127477567 127477800 -28152320 + L1MC LINE L1 3846 4077 -2069 1 1557 2047 146 82 8 chr4 127477859 127478225 -28151895 - ORR1B1 LTR MaLR -1 393 1 1 1557 497 279 9 0 chr4 127478229 127478340 -28151780 + MTEa LTR MaLR 69 180 -199 1 1557 3148 28 0 0 chr4 127478340 127478704 -28151416 - L1Md_T LINE L1 -612 5970 5607 1 1557 5257 31 2 0 chr4 127478704 127479308 -28150812 + L1Md_T LINE L1 5978 6582 0 1 1557 661 256 11 34 chr4 127479326 127479504 -28150616 + MTEa LTR MaLR 164 337 -42 1 1557 817 220 112 43 chr4 127479494 127479771 -28150349 - ORR1D1 LTR MaLR -7 367 1 1 1557 379 210 0 20 chr4 127479823 127479925 -28150195 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1557 1537 287 81 18 chr4 127479925 127480606 -28149514 + L1MC LINE L1 4334 5057 -1089 1 1557 341 330 39 39 chr4 127480622 127480802 -28149318 + L1MCa LINE L1 2091 2270 -4238 1 1557 328 333 184 16 chr4 127481454 127481704 -28148416 + L1MC1 LINE L1 777 1068 -5472 1 1557 414 306 87 31 chr4 127481940 127482261 -28147859 + L1MC1 LINE L1 1139 1477 -5063 1 1557 434 292 46 95 chr4 127482265 127482571 -28147549 + B4 SINE B4 2 292 0 1 1557 198 258 0 0 chr4 127482571 127482633 -28147487 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1557 316 319 123 5 chr4 127482636 127482847 -28147273 + L1MC1 LINE L1 1481 1716 -4917 1 1557 354 23 0 0 chr4 127482866 127482909 -28147211 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1557 311 297 50 77 chr4 127482945 127483204 -28146916 + L1MC1 LINE L1 1827 2078 -4555 1 1557 360 195 39 61 chr4 127483227 127483407 -28146713 + GA-rich Low_complexity Low_complexity 3 178 0 1 1557 852 268 33 191 chr4 127483510 127483930 -28146190 + MTE2b LTR MaLR 1 354 -25 1 1557 516 248 8 0 chr4 127484157 127484282 -28145838 + L1MC1 LINE L1 5260 5385 -1152 1 1557 269 197 14 0 chr4 127484295 127484366 -28145754 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1557 450 214 50 106 chr4 127484380 127484521 -28145599 + RSINE1 SINE B4 33 165 0 1 1557 488 208 12 25 chr4 127484530 127484693 -28145427 + (CATA)n Simple_repeat Simple_repeat 4 164 0 1 1557 1692 258 68 30 chr4 127484702 127485479 -28144641 + L1MC1 LINE L1 5360 6182 -542 1 1557 823 184 204 11 chr4 127485479 127485502 -28144618 - B3 SINE B2 0 216 167 1 1557 297 0 0 0 chr4 127485502 127485535 -28144585 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1557 823 184 204 11 chr4 127485535 127485692 -28144428 - B3 SINE B2 -50 166 1 1 1557 1291 282 122 50 chr4 127485692 127485831 -28144289 + L1MC1 LINE L1 6183 6331 -393 1 1557 240 86 0 0 chr4 127485834 127485869 -28144251 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1557 425 273 55 0 chr4 127485918 127486028 -28144092 + B1F SINE Alu 27 142 -7 1 1557 3071 222 130 65 chr4 127486048 127486988 -28143132 + RMER1B Other Other 65 1065 -1 1 1557 584 171 27 20 chr4 127486988 127487137 -28142983 + GA-rich Low_complexity Low_complexity 1 150 0 1 1557 980 245 57 77 chr4 127487139 127487492 -28142628 + L1MC1 LINE L1 6378 6723 -1 1 1557 822 244 43 27 chr4 127487521 127487778 -28142342 + L1MD1 LINE L1 3349 3609 -2537 1 1557 644 246 234 12 chr4 127487833 127488176 -28141944 - MTD LTR MaLR 0 419 1 1 1557 509 276 87 8 chr4 127488221 127488462 -28141658 - L1MDa LINE L1 -4955 1678 1419 1 1557 881 214 135 23 chr4 127488520 127488735 -28141385 + MLT1D LTR MaLR 261 499 -6 1 1557 543 293 92 85 chr4 127488743 127489329 -28140791 + L1MC LINE L1 3599 4188 -1958 1 1557 356 192 23 47 chr4 127489397 127489518 -28140602 + ORR1C1 LTR MaLR 2 87 -297 1 1557 1967 145 69 9 chr4 127489503 127489850 -28140270 + ORR1C1 LTR MaLR 9 376 -2 1 1557 240 242 62 77 chr4 127489889 127490019 -28140101 + L1M4 LINE L1 4265 4392 -1754 1 1557 599 288 69 17 chr4 127490210 127490383 -28139737 + B3A SINE B2 1 182 -16 1 1557 23 0 0 0 chr4 127490418 127490441 -28139679 + AT_rich Low_complexity Low_complexity 1 23 0 1 1557 2532 104 139 21 chr4 127490445 127490876 -28139244 - RLTR45 LTR ERVK 0 482 1 1 1557 1425 283 74 55 chr4 127490888 127491701 -28138419 + L1MD1 LINE L1 4459 5286 -860 1 1557 816 282 62 78 chr4 127491769 127491942 -28138178 + L1MD1 LINE L1 5424 5592 -767 1 1557 1084 181 24 10 chr4 127491942 127492149 -28137971 + B3 SINE B2 4 213 -3 1 1557 816 282 62 78 chr4 127492149 127492359 -28137761 + L1MD1 LINE L1 5593 5801 -558 1 1557 503 78 0 13 chr4 127492443 127492521 -28137599 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1557 585 226 43 0 chr4 127492537 127492652 -28137468 - B1_Mur1 SINE Alu -6 143 24 1 1557 304 320 47 28 chr4 127492843 127492949 -28137171 + L1MD1 LINE L1 5910 6017 -225 1 1557 555 277 23 68 chr4 127493258 127493479 -28136641 - L1MA10 LINE L1 -23 6311 6101 1 1557 853 240 63 10 chr4 127493486 127493692 -28136428 + ID_B1 SINE B4 2 218 -6 1 1557 557 270 338 3 chr4 127494037 127494331 -28135789 + MTD LTR MaLR 19 410 -9 1 1557 590 210 43 0 chr4 127494457 127494595 -28135525 - B1F2 SINE Alu -5 144 1 1 1557 447 253 189 80 chr4 127494782 127495147 -28134973 + MLT1A1 LTR MaLR 4 408 0 1 1557 636 267 137 30 chr4 127495491 127495754 -28134366 + B4A SINE B4 1 291 -1 1 1557 278 254 0 0 chr4 127495844 127495915 -28134205 + L1M4 LINE L1 2860 2930 -3216 1 1557 189 0 0 0 chr4 127496262 127496283 -28133837 + (ATTG)n Simple_repeat Simple_repeat 3 23 0 1 1557 432 0 0 0 chr4 127496283 127496331 -28133789 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1557 405 0 0 0 chr4 127496331 127496375 -28133745 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1557 585 234 16 8 chr4 127496406 127496531 -28133589 - B3A SINE B2 -31 167 42 1 1557 392 289 120 74 chr4 127496911 127497332 -28132788 + L1MEf LINE L1 853 1273 -5367 1 1557 315 0 0 0 chr4 127497492 127497527 -28132593 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1557 258 32 0 0 chr4 127497527 127497557 -28132563 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1557 707 284 111 46 chr4 127497577 127497839 -28132281 - B4 SINE B4 -4 288 10 1 1557 264 258 208 12 chr4 127497850 127497994 -28132126 + L1MEf LINE L1 1696 1870 -4770 1 1557 597 259 170 29 chr4 127498547 127498889 -28131231 + L1M4c LINE L1 1175 1564 -4820 1 1557 420 259 55 9 chr4 127498954 127499063 -28131057 + PB1D9 SINE Alu 1 114 -6 1 1557 429 70 0 0 chr4 127499063 127499120 -28131000 + (GGA)n Simple_repeat Simple_repeat 1 57 0 1 1557 303 161 0 0 chr4 127499120 127499176 -28130944 + GA-rich Low_complexity Low_complexity 2 57 0 1 1557 1002 209 50 0 chr4 127499197 127499398 -28130722 + B3 SINE B2 6 216 0 1 1557 362 300 97 85 chr4 127499492 127499563 -28130557 + L1M4c LINE L1 2798 2862 -3514 1 1557 369 0 0 0 chr4 127499563 127499604 -28130516 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1557 362 300 97 85 chr4 127499604 127499863 -28130257 + L1M4c LINE L1 2863 3132 -3244 1 1557 183 184 0 0 chr4 127499915 127499953 -28130167 + GA-rich Low_complexity Low_complexity 2 39 0 1 1557 911 255 0 48 chr4 127500029 127500069 -28130051 + B3A SINE B2 3 39 -159 1 1557 3611 33 28 14 chr4 127500069 127500499 -28129621 + RLTR10C LTR ERVK 1 436 0 2 1557 911 255 0 48 chr4 127500499 127500664 -28129456 + B3A SINE B2 40 198 0 1 1557 598 253 0 85 chr4 127500935 127501112 -28129008 + RMER30 DNA MER1_type 7 168 -34 3 1557 287 25 25 0 chr4 127501239 127501279 -28128841 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1557 1131 82 0 14 chr4 127501291 127501439 -28128681 - B1_Mus1 SINE Alu 0 148 3 5 1557 221 143 48 0 chr4 127501492 127501534 -28128586 + (TATG)n Simple_repeat Simple_repeat 4 47 0 6 1557 497 92 13 0 chr4 127501543 127501619 -28128501 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1557 628 283 97 38 chr4 127501623 127501942 -28128178 + L1MB4 LINE L1 5745 6082 -98 8 1557 474 18 0 0 chr4 127501992 127502047 -28128073 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1557 315 0 0 0 chr4 127502047 127502081 -28128039 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1557 948 282 84 93 chr4 127502127 127503252 -28126868 + L1ME2 LINE L1 4897 6011 -153 1 1557 1922 116 8 111 chr4 127504827 127505186 -28124934 + ORR1A4 LTR MaLR 1 322 -7 1 1557 658 288 151 51 chr4 127505557 127505908 -28124212 - MLT1B LTR MaLR 0 390 5 1 1557 813 252 20 16 chr4 127506093 127506339 -28123781 - L1M2 LINE L1 -1811 4329 4083 1 1557 344 232 10 0 chr4 127506384 127506483 -28123637 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1557 481 279 71 99 chr4 127506489 127506783 -28123337 - B4 SINE B4 -2 290 5 1 1557 235 204 0 0 chr4 127506831 127506880 -28123240 - L1M2 LINE L1 -2139 4004 3956 1 1557 402 235 147 0 chr4 127506887 127506989 -28123131 + PB1D7 SINE Alu 4 120 0 1 1557 2685 268 63 9 chr4 127507027 127507947 -28122173 - L1M2 LINE L1 -2261 3882 2913 1 1557 2107 269 109 24 chr4 127507952 127509059 -28121061 + L1MA7 LINE L1 4348 5545 -746 1 1557 1282 184 170 76 chr4 127509059 127509235 -28120885 + ORR1D1 LTR MaLR 1 177 -197 1 1557 489 34 0 0 chr4 127509235 127509294 -28120826 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1557 1282 184 170 76 chr4 127509294 127509459 -28120661 + ORR1D1 LTR MaLR 178 374 0 1 1557 2107 288 73 26 chr4 127509459 127510143 -28119977 + L1MA7 LINE L1 5546 6271 -20 1 1557 604 269 73 24 chr4 127510236 127510442 -28119678 + B3 SINE B2 1 216 0 2 1557 312 27 0 0 chr4 127510575 127510612 -28119508 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1557 207 0 0 0 chr4 127511310 127511333 -28118787 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1557 543 306 64 5 chr4 127511667 127511887 -28118233 + Charlie23a DNA MER1_type 79 311 -28 2 1557 217 164 16 47 chr4 127512054 127512118 -28118002 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 2 1557 318 152 0 0 chr4 127512150 127512209 -28117911 + GA-rich Low_complexity Low_complexity 1 59 0 2 1557 566 307 104 45 chr4 127512236 127512458 -28117662 - B4A SINE B4 -57 235 1 2 1557 241 178 0 64 chr4 127512667 127512745 -28117375 + G-rich Low_complexity Low_complexity 1 73 0 2 1557 229 148 0 58 chr4 127512750 127512836 -28117284 + GA-rich Low_complexity Low_complexity 3 83 0 2 1557 273 218 0 0 chr4 127512990 127513068 -28117052 + CT-rich Low_complexity Low_complexity 3 80 0 3 1557 329 62 21 0 chr4 127513171 127513219 -28116901 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 3 1557 252 111 0 0 chr4 127514810 127514855 -28115265 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1557 1144 299 47 40 chr4 127514888 127515480 -28114640 + L1_Mur3 LINE L1 5055 5650 -230 3 1557 3578 293 60 44 chr4 127515659 127516960 -28113160 + Lx8 LINE L1 6136 7457 -16 3 1557 595 286 22 58 chr4 127517118 127517341 -28112779 - ID_B1 SINE B4 -8 216 2 3 1557 414 343 14 35 chr4 127517353 127517498 -28112622 + MLT1H LTR MaLR 60 201 -348 3 1557 267 329 125 12 chr4 127517565 127517725 -28112395 + MLT1H LTR MaLR 349 526 -23 3 1557 858 296 22 74 chr4 127517944 127518351 -28111769 - MTD LTR MaLR -15 404 1 3 1557 244 338 37 44 chr4 127518360 127518496 -28111624 - MIRc SINE MIR -133 135 1 3 1557 202 273 199 14 chr4 127519354 127519495 -28110625 + L3 LINE CR1 2426 2592 -1897 3 1557 703 245 21 0 chr4 127519721 127519864 -28110256 + MLT1J1 LTR MaLR 30 175 -269 4 1557 500 214 9 0 chr4 127519906 127520018 -28110102 + L1MB3 LINE L1 6067 6179 -4 4 1557 2184 113 0 39 chr4 127520226 127520558 -28109562 + ORR1A2 LTR MaLR 1 319 -8 4 1557 1261 306 52 48 chr4 127520567 127521051 -28109069 - MLT1F2 LTR MaLR 0 560 75 4 1557 205 260 0 20 chr4 127521895 127521946 -28108174 - MIRc SINE MIR -4 264 215 4 1557 200 239 0 0 chr4 127522064 127522110 -28108010 - L2b LINE L2 -16 3359 3314 4 1557 254 290 156 30 chr4 127522264 127522399 -28107721 - MIR3 SINE MIR -3 205 54 4 1557 432 216 235 84 chr4 127522642 127522814 -28107306 + ORR1D2 LTR MaLR 1 195 -183 4 1557 1005 144 0 0 chr4 127523361 127523507 -28106613 - B1_Mus2 SINE Alu 0 147 2 4 1557 758 274 10 37 chr4 127523935 127524168 -28105952 + B4 SINE B4 81 291 -1 4 1557 181 268 0 82 chr4 127524320 127524381 -28105739 - L2a LINE L2 -4 3422 3367 5 1557 280 305 60 60 chr4 127524827 127524977 -28105143 + MLT1A1 LTR MaLR 253 402 -6 5 1557 191 267 74 53 chr4 127524978 127525073 -28105047 + L3 LINE CR1 2382 2478 -2011 5 1557 223 315 44 44 chr4 127525477 127525590 -28104530 + MIRm SINE MIR 164 276 0 5 1557 247 231 15 44 chr4 127525523 127525591 -28104529 + L2a LINE L2 3360 3425 -1 5 1557 306 0 0 0 chr4 127526434 127526468 -28103652 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 1557 398 96 14 0 chr4 127527225 127527298 -28102822 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1557 22 103 0 0 chr4 127527299 127527377 -28102743 + AT_rich Low_complexity Low_complexity 1 78 0 5 1557 340 324 9 0 chr4 127527455 127527560 -28102560 + B1F SINE Alu 1 106 -43 5 1557 1500 211 132 0 chr4 127527751 127528093 -28102027 + MTD LTR MaLR 20 406 -13 5 1557 244 342 0 25 chr4 127528104 127528224 -28101896 + L1M5 LINE L1 4987 5103 -1043 6 1557 530 105 23 0 chr4 127528265 127528351 -28101769 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 6 1557 242 242 56 80 chr4 127528444 127528606 -28101514 + L1M5 LINE L1 5262 5419 -705 6 1557 1358 219 81 48 chr4 127528825 127529143 -28100977 + RMER19C LTR ERVK 13 558 -344 6 1557 441 0 0 0 chr4 127529143 127529192 -28100928 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1557 1358 242 53 68 chr4 127529192 127529528 -28100592 + RMER19C LTR ERVK 282 610 -1 6 1557 492 309 62 10 chr4 127530540 127530749 -28099371 + L1M5 LINE L1 5604 5823 -2059 6 1557 624 250 74 32 chr4 127532513 127532703 -28097417 + MIR SINE MIR 60 257 -5 6 1558 287 230 103 38 chr4 127533142 127533258 -28096862 - MIR SINE MIR -56 152 28 6 1558 1199 238 44 83 chr4 127533845 127534281 -28095839 + MTD LTR MaLR 1 419 0 6 1558 318 238 38 21 chr4 127534492 127534581 -28095539 - PB1D10 SINE Alu -20 129 43 6 1558 260 328 0 0 chr4 127534765 127534832 -28095288 + BC1_Mm scRNA scRNA 18 84 -68 6 1558 897 237 5 5 chr4 127534846 127535033 -28095087 - B3A SINE B2 -11 187 1 6 1558 492 282 147 23 chr4 127536074 127536292 -28093828 - RMER15 LTR ERVL -22 553 309 7 1558 509 296 72 22 chr4 127537541 127537721 -28092399 + MLT1A LTR MaLR 3 191 -183 7 1558 291 315 206 26 chr4 127537978 127538167 -28091953 + MIR SINE MIR 36 258 -4 7 1558 224 307 44 22 chr4 127539885 127539975 -28090145 + MIRc SINE MIR 76 167 -101 7 1558 336 48 0 0 chr4 127540055 127540097 -28090023 + (CAT)n Simple_repeat Simple_repeat 2 43 0 7 1558 545 267 0 0 chr4 127540695 127540811 -28089309 + PB1D10 SINE Alu 2 117 0 7 1558 537 76 0 0 chr4 127540987 127541066 -28089054 + (CAG)n Simple_repeat Simple_repeat 3 81 0 7 1558 306 317 22 73 chr4 127541073 127541209 -28088911 + MER5A DNA MER1_type 59 187 -2 7 1558 601 239 62 51 chr4 127541221 127541397 -28088723 + MER5B DNA MER1_type 1 178 0 7 1558 542 318 129 19 chr4 127541997 127542260 -28087860 - B4A SINE B4 0 292 1 7 1558 385 372 81 0 chr4 127542750 127542922 -28087198 + MER2 DNA MER2_type 151 336 -9 8 1558 325 280 116 4 chr4 127543146 127543268 -28086852 + MLT1I LTR MaLR 288 409 -2 8 1558 357 151 128 64 chr4 127543811 127543889 -28086231 + B4 SINE B4 5 87 -205 8 1558 328 225 74 83 chr4 127543947 127544068 -28086052 + RSINE1 SINE B4 17 136 -29 8 1558 411 296 97 79 chr4 127544127 127544248 -28085872 + B4 SINE B4 107 232 -60 8 1558 1838 132 81 13 chr4 127544248 127544556 -28085564 + ORR1A4 LTR MaLR 1 329 0 8 1558 411 296 97 79 chr4 127544556 127544599 -28085521 + B4 SINE B4 233 274 -18 8 1558 437 280 18 60 chr4 127544639 127544806 -28085314 + MLT1A1 LTR MaLR 249 408 0 8 1558 318 288 175 18 chr4 127545622 127545740 -28084380 + B3A SINE B2 2 147 -51 8 1558 615 121 0 0 chr4 127545740 127545839 -28084281 + (CA)n Simple_repeat Simple_repeat 1 99 0 8 1558 318 298 166 19 chr4 127545839 127545909 -28084211 + B3A SINE B2 146 214 -2 8 1558 276 305 18 37 chr4 127546172 127546281 -28083839 - MTE2b LTR MaLR -34 345 239 8 1558 288 0 0 0 chr4 127546318 127546350 -28083770 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 9 1558 1819 172 114 2 chr4 127546350 127546755 -28083365 - Lx2B LINE L1 -16 7042 6480 9 1558 2347 165 8 0 chr4 127546808 127547204 -28082916 + Lx7 LINE L1 5276 5678 -2018 9 1558 300 342 86 20 chr4 127547938 127548135 -28081985 + L2c LINE L2 2601 2810 -609 9 1558 231 275 54 77 chr4 127548301 127548431 -28081689 + L2c LINE L2 3022 3148 -239 9 1558 215 139 56 0 chr4 127548572 127548608 -28081512 - B2_Mm2 SINE B2 -155 40 3 9 1558 518 302 149 0 chr4 127548694 127548929 -28081191 - L1MB1 LINE L1 -95 6094 5825 9 1558 350 365 57 35 chr4 127551350 127551577 -28078543 + MER102c DNA MER1_type 78 309 -22 9 1558 2740 26 181 0 chr4 127551633 127551981 -28078139 + IAPLTR2a LTR ERVK 1 411 0 9 1558 612 124 16 124 chr4 127551982 127552111 -28078009 + IAPEz-int LTR ERVK 9 123 -6358 9 1558 234 267 0 0 chr4 127552111 127552156 -28077964 + RLTR27 LTR ERVK 231 275 -34 9 1558 255 309 0 0 chr4 127552182 127552237 -28077883 + RLTR27 LTR ERVK 221 275 -34 9 1558 3595 61 1 17 chr4 127552237 127552816 -28077304 + IAPEz-int LTR ERVK 168 662 -5819 9 1558 1022 42 0 0 chr4 127552816 127552935 -28077185 + IAPEz-int LTR ERVK 1359 1477 -5004 9 1558 1902 89 0 0 chr4 127552936 127553182 -28076938 + IAPEz-int LTR ERVK 2252 2497 -5183 9 1558 14467 58 9 8 chr4 127553200 127555000 -28075120 + IAPEz-int LTR ERVK 4678 6479 -2 1 1558 2724 29 181 0 chr4 127555002 127555350 -28074770 + IAPLTR2a LTR ERVK 1 411 0 1 1558 262 290 106 61 chr4 127555633 127555765 -28074355 + MIRc SINE MIR 117 254 -14 1 1558 22 0 0 0 chr4 127556059 127556081 -28074039 + AT_rich Low_complexity Low_complexity 1 22 0 1 1558 310 151 147 21 chr4 127556084 127556179 -28073941 - Lx3B LINE L1 -3 6970 6864 1 1558 335 322 16 33 chr4 127556716 127556838 -28073282 - ORR1E LTR MaLR -8 371 252 1 1558 4588 162 47 61 chr4 127556878 127557779 -28072341 - RMER19B LTR ERVK -14 888 1 1 1558 524 265 82 30 chr4 127557808 127558012 -28072108 - ORR1E LTR MaLR -104 255 17 1 1558 531 290 32 0 chr4 127558369 127558493 -28071627 + B1_Mur1 SINE Alu 6 133 -16 1 1558 228 286 28 19 chr4 127558541 127558648 -28071472 + L1MEe LINE L1 2104 2211 -3955 1 1558 270 241 11 11 chr4 127558683 127558771 -28071349 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1558 447 301 55 61 chr4 127558771 127558934 -28071186 - RSINE1 SINE B4 0 165 4 1 1558 943 357 99 50 chr4 127558986 127559328 -28070792 + L1MEe LINE L1 2260 2615 -3531 1 1558 210 71 0 0 chr4 127559328 127559356 -28070764 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1558 943 357 99 50 chr4 127559356 127559818 -28070302 + L1MEe LINE L1 2616 3104 -3042 1 1558 1619 189 86 11 chr4 127559818 127560166 -28069954 - ORR1D1 LTR MaLR 0 374 1 1 1558 309 51 0 0 chr4 127560415 127560454 -28069666 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1558 689 317 198 38 chr4 127560625 127561124 -28068996 + L1MEe LINE L1 3630 4208 -1938 1 1558 543 255 47 53 chr4 127561124 127561364 -28068756 + MTEb LTR MaLR 132 377 -2 1 1558 315 0 0 0 chr4 127561414 127561449 -28068671 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1558 1009 121 17 0 chr4 127561463 127561636 -28068484 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1 1558 278 125 0 35 chr4 127561674 127561732 -28068388 + (CATA)n Simple_repeat Simple_repeat 4 59 0 1 1558 436 130 22 0 chr4 127561732 127561824 -28068296 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1 1558 432 315 98 69 chr4 127562098 127562739 -28067381 + L1MEe LINE L1 4714 5373 -773 1 1558 386 172 28 75 chr4 127562800 127562907 -28067213 - L1M2 LINE L1 -3073 3070 2969 1 1558 849 303 115 16 chr4 127562928 127563848 -28066272 + L1MA4A LINE L1 4788 5788 -512 1 1558 292 289 0 13 chr4 127563945 127564022 -28066098 + BC1_Mm scRNA scRNA 9 84 -68 1 1558 404 301 8 8 chr4 127564025 127564149 -28065971 + L1MA4A LINE L1 5814 5937 -366 1 1558 344 288 71 18 chr4 127564350 127564463 -28065657 + L1MEc LINE L1 1907 2025 -4375 1 1558 257 295 115 10 chr4 127564524 127564620 -28065500 - MLT1C LTR MaLR -3 464 359 1 1558 240 243 12 75 chr4 127564615 127564695 -28065425 - PB1D10 SINE Alu -17 100 26 1 1558 372 362 30 24 chr4 127565145 127565312 -28064808 - MLT1C LTR MaLR -261 206 39 1 1558 1241 269 124 96 chr4 127565366 127566044 -28064076 - MLT1C-int LTR MaLR -1 1370 674 1 1558 550 281 50 6 chr4 127566331 127566492 -28063628 + RMER15 LTR ERVL 408 575 0 1 1558 523 298 91 120 chr4 127566492 127566784 -28063336 - MLT1C-int LTR MaLR -694 677 287 1 1558 2211 173 57 0 chr4 127566784 127567154 -28062966 + ORR1B1 LTR MaLR 4 394 0 1 1558 523 266 64 59 chr4 127567154 127567342 -28062778 - MLT1C-int LTR MaLR -1085 286 98 1 1558 312 256 0 22 chr4 127567521 127567701 -28062419 + GA-rich Low_complexity Low_complexity 2 177 0 1 1558 342 272 0 0 chr4 127567734 127568061 -28062059 + GA-rich Low_complexity Low_complexity 1 327 0 1 1558 350 304 129 41 chr4 127568166 127568410 -28061710 + L1MEc LINE L1 2265 2528 -3791 1 1558 366 306 79 62 chr4 127568649 127569240 -28060880 + L1MEc LINE L1 2868 3466 -2853 1 1558 606 315 79 36 chr4 127569498 127569775 -28060345 - B4 SINE B4 -2 290 2 1 1558 570 67 0 0 chr4 127569821 127569896 -28060224 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 1 1558 462 207 80 22 chr4 127569896 127570027 -28060093 + RMER1C Other Other 1203 1342 0 1 1558 1420 254 56 17 chr4 127570170 127570631 -28059489 + L1MEc LINE L1 3870 4348 -1971 1 1558 258 335 49 25 chr4 127570870 127571032 -28059088 + L1MC LINE L1 4502 4667 -1479 1 1558 735 203 7 39 chr4 127571037 127571178 -28058942 + ID_B1 SINE B4 75 211 -13 1 1558 270 73 0 0 chr4 127571178 127571219 -28058901 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 1 1558 735 252 25 104 chr4 127571219 127571252 -28058868 + ID_B1 SINE B4 212 236 -56 1 1558 1164 306 174 16 chr4 127571454 127571593 -28058527 + Tigger1 DNA MER2_type 27 169 -2249 1 1558 1648 209 72 0 chr4 127571593 127571942 -28058178 - ORR1D1 LTR MaLR 0 374 1 1 1558 1164 306 174 16 chr4 127571942 127572364 -28057756 + Tigger1 DNA MER2_type 170 677 -1741 1 1558 278 304 126 71 chr4 127572379 127572402 -28057718 - Lx8 LINE L1 -9 7464 7442 1 1558 351 0 0 0 chr4 127572402 127572441 -28057679 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1558 454 288 211 40 chr4 127572441 127572844 -28057276 - Lx8 LINE L1 -32 7441 6968 1 1558 4138 241 73 15 chr4 127572857 127573921 -28056199 + Tigger1 DNA MER2_type 673 1798 -620 1 1558 519 332 38 8 chr4 127573972 127574212 -28055908 + L1_Mur3 LINE L1 5511 5757 -123 1 1558 236 285 7 115 chr4 127574382 127574521 -28055599 + L1_Rod LINE L1 5724 5847 0 1 1558 1371 325 85 14 chr4 127574610 127575129 -28054991 + Tigger1 DNA MER2_type 1797 2350 -68 1 1558 239 309 0 0 chr4 127575129 127575210 -28054910 + ID4 SINE ID 2 82 -1 1 1558 1371 325 85 14 chr4 127575210 127575242 -28054878 + Tigger1 DNA MER2_type 2351 2386 -32 1 1558 599 318 78 64 chr4 127575271 127575567 -28054553 - MLT1D LTR MaLR 0 505 206 1 1558 813 106 36 9 chr4 127575574 127575792 -28054328 + (TG)n Simple_repeat Simple_repeat 1 223 0 1 1558 238 236 0 98 chr4 127575797 127575858 -28054262 - B4A SINE B4 0 292 238 1 1558 255 186 0 0 chr4 127575858 127575901 -28054219 - B4A SINE B4 -248 44 2 1 1558 253 207 0 49 chr4 127575927 127575988 -28054132 - MLT1D LTR MaLR -334 171 114 1 1558 387 320 116 43 chr4 127576086 127576501 -28053619 + L1ME1 LINE L1 4886 5330 -816 1 1558 756 253 17 17 chr4 127576504 127576681 -28053439 + B4A SINE B4 2 178 -114 1 1558 410 127 0 56 chr4 127576793 127576918 -28053202 + (CAGAGA)n Simple_repeat Simple_repeat 1 118 0 1 1558 1098 317 58 29 chr4 127576920 127577469 -28052651 + L1ME1 LINE L1 5317 5881 -298 1 1558 201 266 197 80 chr4 127578321 127578570 -28051550 - L2c LINE L2 0 3387 3110 1 1558 585 280 7 0 chr4 127578677 127578820 -28051300 + B1_Mur1 SINE Alu 1 144 -5 1 1558 403 288 90 35 chr4 127579393 127579537 -28050583 + B4 SINE B4 4 155 -137 1 1558 364 303 41 34 chr4 127579983 127580130 -28049990 - MIR SINE MIR -100 162 15 1 1558 689 67 0 95 chr4 127580889 127581005 -28049115 + B1_Mus1 SINE Alu 9 113 -35 1 1558 180 304 0 0 chr4 127581248 127581294 -28048826 + L2b LINE L2 3101 3146 -229 1 1558 256 340 21 0 chr4 127581354 127581448 -28048672 - MLT1K LTR MaLR -339 256 161 1 1558 895 241 5 49 chr4 127581552 127581757 -28048363 + B4A SINE B4 97 292 0 1 1558 1427 278 32 43 chr4 127581873 127582336 -28047784 - MER113 DNA MER1_type -3 518 61 1 1558 210 262 0 0 chr4 127582581 127582623 -28047497 + polypyrimidine Low_complexity Low_complexity 2 43 0 1 1558 263 157 14 0 chr4 127582783 127582853 -28047267 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1558 369 93 26 26 chr4 127582848 127582925 -28047195 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 1 1558 180 0 0 0 chr4 127583447 127583467 -28046653 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 1 1558 614 298 53 41 chr4 127583587 127583832 -28046288 + B4 SINE B4 3 250 -42 1 1558 280 388 0 15 chr4 127584212 127584348 -28045772 + MER63C DNA AcHobo 20 153 -777 1 1558 435 38 0 0 chr4 127584405 127584458 -28045662 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1558 1865 294 45 66 chr4 127584463 127585191 -28044929 + MER63C DNA AcHobo 158 870 -60 1 1558 303 313 111 30 chr4 127585546 127585681 -28044439 - MER20 DNA MER1_type -67 152 7 1 1558 216 0 0 0 chr4 127585681 127585705 -28044415 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1558 604 277 108 56 chr4 127586170 127586475 -28043645 - MLT1E1 LTR MaLR -80 574 204 1 1558 3447 20 8 0 chr4 127586599 127586992 -28043128 - MTA_Mm LTR MaLR 0 396 1 1 1558 9494 26 4 3 chr4 127586992 127588089 -28042031 - MTA_Mm-int LTR MaLR 0 1098 1 1 1558 3493 20 5 0 chr4 127588089 127588483 -28041637 - MTA_Mm LTR MaLR 0 396 1 1 1558 254 281 112 0 chr4 127588611 127588700 -28041420 - MIR SINE MIR -37 225 127 1 1558 228 304 167 0 chr4 127588686 127588788 -28041332 + L2b LINE L2 3038 3156 -219 1 1558 556 217 217 0 chr4 127588795 127588924 -28041196 + MTEa LTR MaLR 3 159 -220 1 1558 1266 295 42 17 chr4 127588960 127589272 -28040848 + MTE2b LTR MaLR 3 314 -65 1 1558 243 0 0 0 chr4 127589272 127589299 -28040821 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1 1558 1266 295 42 17 chr4 127589299 127589341 -28040779 + MTE2b LTR MaLR 315 366 -13 1 1558 603 270 13 7 chr4 127589354 127589503 -28040617 + MTEa LTR MaLR 223 372 -7 1 1558 427 232 30 0 chr4 127589760 127589859 -28040261 + MTEa LTR MaLR 278 379 0 1 1558 573 318 136 55 chr4 127589879 127590298 -28039822 + L1MC4 LINE L1 7110 7562 -480 1 1558 210 71 0 0 chr4 127590431 127590459 -28039661 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1558 1281 272 19 3 chr4 127590460 127590828 -28039292 + L1MA4 LINE L1 5254 5627 -670 1 1558 967 195 55 35 chr4 127590888 127591090 -28039030 + ORR1D2 LTR MaLR 99 304 -66 1 1558 719 260 94 1 chr4 127591114 127591387 -28038733 + L1MA4 LINE L1 5645 5936 -364 1 1558 435 303 54 83 chr4 127591390 127591667 -28038453 + L1MC4 LINE L1 7770 8038 -4 1 1558 266 200 62 0 chr4 127592332 127592397 -28037723 + RMER12B LTR ERVK 1336 1404 0 1 1558 649 319 79 15 chr4 127592401 127592668 -28037452 + MLT1F2 LTR MaLR 242 525 -35 1 1558 1888 113 3 14 chr4 127592670 127592965 -28037155 + L1_Mur3 LINE L1 2202 2493 -3387 1 1558 227 277 0 15 chr4 127593165 127593231 -28036889 + L1M2 LINE L1 5519 5583 -714 1 1558 234 379 0 0 chr4 127593204 127593299 -28036821 + L1_Mur3 LINE L1 5523 5617 -263 1 1558 2132 92 81 58 chr4 127593482 127593847 -28036273 + MT2B LTR ERVL 1 355 -246 1 1558 1764 109 0 0 chr4 127594099 127594346 -28035774 + MT2B LTR ERVL 355 601 0 1 1558 254 238 237 0 chr4 127594346 127594484 -28035636 - L1P5 LINE L1 -431 5860 5693 1 1558 362 193 0 0 chr4 127594649 127594706 -28035414 + PB1D10 SINE Alu 53 109 -8 1 1558 306 50 0 0 chr4 127594933 127594973 -28035147 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1558 632 259 7 77 chr4 127595001 127595156 -28034964 - RSINE1 SINE B4 -20 145 2 1 1558 420 105 0 0 chr4 127595735 127595811 -28034309 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1558 761 327 23 90 chr4 127595923 127596313 -28033807 - MLT1A LTR MaLR -10 364 1 1 1558 747 301 151 58 chr4 127596376 127596999 -28033121 + LTR50 LTR ERVL 98 778 -17 1 1558 2237 109 6 9 chr4 127597376 127597701 -28032419 - ORR1A3 LTR MaLR -2 324 1 1 1558 393 102 0 0 chr4 127597716 127597775 -28032345 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1558 334 301 87 73 chr4 127599074 127599379 -28030741 + MTEa LTR MaLR 61 369 -10 1 1558 271 117 67 0 chr4 127599407 127599467 -28030653 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 1 1558 421 313 110 51 chr4 127599599 127599872 -28030248 + B4A SINE B4 2 290 -2 1 1558 288 0 0 0 chr4 127600338 127600370 -28029750 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1558 532 302 68 34 chr4 127600937 127601263 -28028857 - HAL1 LINE L1 -698 1809 1473 1 1558 852 264 116 69 chr4 127602232 127602594 -28027526 + MTE2a LTR MaLR 1 379 0 1 1558 232 295 107 69 chr4 127602829 127602960 -28027160 + LTR48 LTR ERV1 64 199 -588 1 1558 921 291 90 0 chr4 127603029 127603373 -28026747 + MTE2b LTR MaLR 1 375 -4 1 1558 592 243 29 0 chr4 127603663 127603799 -28026321 - MTEa LTR MaLR -34 345 206 1 1558 376 336 25 57 chr4 127603986 127604144 -28025976 + MER117 DNA MER1_type 10 162 -35 2 1558 256 290 43 0 chr4 127604191 127604260 -28025860 - L3 LINE CR1 -891 3598 3527 2 1558 223 261 0 0 chr4 127604315 127604361 -28025759 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1558 550 250 199 0 chr4 127604361 127604497 -28025623 - RSINE1 SINE B4 0 165 3 2 1558 565 14 27 0 chr4 127605169 127605243 -28024877 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1558 228 280 20 70 chr4 127605947 127606047 -28024073 + L2b LINE L2 3077 3171 -216 2 1558 852 231 64 5 chr4 127606548 127606752 -28023368 + B3 SINE B2 1 216 0 2 1558 255 314 73 64 chr4 127606785 127606894 -28023226 + PB1D10 SINE Alu 6 115 -2 2 1558 336 247 12 0 chr4 127606894 127606975 -28023145 + ID4_ SINE ID 2 83 0 2 1558 180 296 23 0 chr4 127607200 127607244 -28022876 + L4 LINE RTE 1081 1125 -904 2 1558 1368 159 0 48 chr4 127607284 127607515 -28022605 - URR1B DNA MER1_type 0 225 6 2 1558 180 184 48 10 chr4 127608045 127608149 -28021971 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1558 379 322 65 25 chr4 127608158 127608403 -28021717 + L2 LINE L2 2162 2416 -1003 2 1558 1193 235 104 65 chr4 127608412 127608678 -28021442 + ORR1D2 LTR MaLR 1 289 -81 2 1558 2021 121 159 0 chr4 127608678 127609017 -28021103 + ORR1B1 LTR MaLR 1 393 -1 2 1558 1193 235 104 65 chr4 127609017 127609105 -28021015 + ORR1D2 LTR MaLR 290 369 -1 2 1558 367 304 10 19 chr4 127609661 127609765 -28020355 + PB1D7 SINE Alu 2 104 -16 2 1558 232 294 70 49 chr4 127609783 127609926 -28020194 + L2b LINE L2 3205 3350 -25 2 1558 328 252 150 10 chr4 127609932 127610032 -28020088 - PB1D10 SINE Alu -1 116 3 2 1558 522 0 0 0 chr4 127610097 127610155 -28019965 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1558 793 250 49 16 chr4 127610169 127610352 -28019768 - B4 SINE B4 -6 286 98 2 1558 299 273 159 0 chr4 127610346 127610434 -28019686 - B4 SINE B4 -138 154 53 2 1558 353 256 0 0 chr4 127611127 127611205 -28018915 + ID4 SINE ID 3 80 -3 2 1558 387 0 0 0 chr4 127611432 127611475 -28018645 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1558 769 248 51 15 chr4 127611485 127611682 -28018438 - B3 SINE B2 -12 204 1 2 1558 384 40 0 0 chr4 127611779 127611829 -28018291 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1558 217 296 12 24 chr4 127611863 127611946 -28018174 + A-rich Low_complexity Low_complexity 2 83 0 2 1558 236 262 33 0 chr4 127611873 127611934 -28018186 + GA-rich Low_complexity Low_complexity 4 66 0 2 1558 288 288 26 26 chr4 127611986 127612100 -28018020 - MER103 DNA DNA -50 116 3 2 1558 201 265 73 10 chr4 127613300 127613399 -28016721 + MIRc SINE MIR 62 167 -101 2 1558 227 336 71 86 chr4 127613539 127613584 -28016536 + MER3 DNA MER1_type 66 113 -96 2 1558 1288 131 8 83 chr4 127613584 127613825 -28016295 - URR1B DNA MER1_type 0 225 3 2 1558 227 336 71 86 chr4 127613825 127613919 -28016201 + MER3 DNA MER1_type 114 203 -6 2 1558 1006 260 70 64 chr4 127614472 127614830 -28015290 + MTEa LTR MaLR 19 378 -1 2 1558 231 36 0 0 chr4 127615979 127616007 -28014113 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1558 512 301 99 17 chr4 127616036 127616269 -28013851 - B4 SINE B4 -37 255 4 2 1558 308 271 10 30 chr4 127616472 127616571 -28013549 + MER53 DNA hAT 7 103 -90 2 1558 194 262 76 15 chr4 127617639 127617705 -28012415 + MIR SINE MIR 81 150 -58 2 1558 968 265 18 46 chr4 127617765 127618050 -28012070 - B4 SINE B4 -13 279 3 2 1558 228 262 25 12 chr4 127618291 127618372 -28011748 + MIRb SINE MIR 183 264 -4 2 1558 555 337 5 31 chr4 127618593 127618789 -28011331 - RMER30 DNA MER1_type -10 192 2 2 1558 377 167 0 43 chr4 127618827 127618896 -28011224 + Charlie12 DNA MER1_type 2803 2868 -5 2 1558 237 279 80 105 chr4 127619971 127620171 -28009949 - MIR SINE MIR -4 258 64 2 1558 910 189 5 7 chr4 127620406 127620845 -28009275 + (TGGA)n Simple_repeat Simple_repeat 1 437 0 2 1558 213 39 0 0 chr4 127621345 127621371 -28008749 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1558 558 285 47 45 chr4 127621759 127622042 -28008078 + LTR81B LTR ERV1? 879 1393 0 2 1558 486 169 0 0 chr4 127622176 127622265 -28007855 + (TG)n Simple_repeat Simple_repeat 1 89 0 2 1558 211 215 15 15 chr4 127623071 127623137 -28006983 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1558 484 265 88 24 chr4 127623137 127623307 -28006813 - B3A SINE B2 -16 182 2 2 1558 186 284 0 0 chr4 127624341 127624422 -28005698 + (TCCA)n Simple_repeat Simple_repeat 2 82 0 2 1558 280 261 17 0 chr4 127624494 127624613 -28005507 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 2 1558 815 196 0 0 chr4 127624620 127624763 -28005357 - B1_Mur1 SINE Alu -5 144 2 2 1558 275 300 18 9 chr4 127624765 127624848 -28005272 + CT-rich Low_complexity Low_complexity 29 112 0 2 1558 423 0 0 0 chr4 127624848 127624895 -28005225 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1558 275 300 18 9 chr4 127624895 127624922 -28005198 + polypyrimidine Low_complexity Low_complexity 2 28 0 2 1558 234 278 124 0 chr4 127625095 127625192 -28004928 - L2b LINE L2 -39 3336 3228 2 1558 760 237 116 0 chr4 127625598 127625813 -28004307 + MER2 DNA MER2_type 47 286 -59 2 1558 303 224 0 0 chr4 127626438 127626545 -28003575 + CT-rich Low_complexity Low_complexity 1 107 0 2 1558 342 0 0 0 chr4 127627361 127627399 -28002721 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1558 776 325 13 17 chr4 127627533 127627765 -28002355 + B4A SINE B4 1 231 -61 2 1558 522 105 73 10 chr4 127627767 127627863 -28002257 + B2_Mm2 SINE B2 1 102 -93 2 1558 333 118 0 0 chr4 127627863 127627914 -28002206 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1558 201 74 0 0 chr4 127627916 127627943 -28002177 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1558 275 210 16 0 chr4 127627947 127628009 -28002111 + B4A SINE B4 220 282 -10 2 1558 188 324 14 0 chr4 127629132 127629203 -28000917 + MIRm SINE MIR 57 128 -148 2 1558 312 211 0 0 chr4 127629988 127630059 -28000061 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1558 389 200 88 26 chr4 127630558 127630671 -27999449 + L1MC5 LINE L1 7696 7815 -146 2 1558 214 255 0 0 chr4 127630851 127630902 -27999218 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1558 846 281 73 11 chr4 127630917 127631191 -27998929 - B4 SINE B4 0 292 2 2 1558 180 0 0 0 chr4 127631194 127631214 -27998906 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 2 1558 473 338 9 31 chr4 127632080 127632306 -27997814 - L3 LINE CR1 -778 3711 3491 2 1558 297 367 106 51 chr4 127632543 127633080 -27997040 + L2a LINE L2 2811 3426 0 2 1558 1240 219 35 15 chr4 127633483 127633743 -27996377 - B4A SINE B4 -27 265 1 2 1558 258 321 12 0 chr4 127634909 127634993 -27995127 + MLT1H LTR MaLR 431 515 -34 2 1558 1203 247 80 31 chr4 127635313 127635764 -27994356 + L1_Rod LINE L1 421 893 -6279 2 1558 452 242 15 38 chr4 127636002 127636135 -27993985 - L1_Rod LINE L1 -4271 1576 1447 2 1558 378 123 35 58 chr4 127636308 127636394 -27993726 + L1_Rod LINE L1 1341 1424 -4423 2 1558 786 153 12 6 chr4 127636394 127636558 -27993562 + GA-rich Low_complexity Low_complexity 1 165 0 2 1558 1287 222 63 61 chr4 127636562 127636988 -27993132 + L1_Rod LINE L1 1444 1870 -3977 2 1558 327 65 0 0 chr4 127637326 127637372 -27992748 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1558 335 281 19 32 chr4 127637453 127637611 -27992509 + (CA)n Simple_repeat Simple_repeat 2 157 0 2 1558 333 214 0 28 chr4 127637859 127637931 -27992189 + MIRc SINE MIR 190 259 -9 2 1558 219 323 0 0 chr4 127639132 127639194 -27990926 + MIR SINE MIR 92 153 -109 2 1558 227 309 13 0 chr4 127639493 127639569 -27990551 - L2c LINE L2 -41 3346 3262 2 1558 238 281 12 24 chr4 127639839 127639923 -27990197 + (ATGGTG)n Simple_repeat Simple_repeat 2 84 0 2 1558 432 283 17 51 chr4 127639938 127640113 -27990007 - HAL1-2a_MD LINE L1 -505 2519 2351 2 1558 3852 44 2 0 chr4 127641959 127642433 -27987687 + MT2C_Mm LTR ERVL 1 475 0 2 1558 369 0 0 0 chr4 127643976 127644017 -27986103 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 1558 234 265 15 0 chr4 127644064 127644132 -27985988 + MIRm SINE MIR 208 276 0 2 1558 952 220 0 6 chr4 127644690 127644873 -27985247 + B3 SINE B2 1 182 -34 2 1558 464 207 0 0 chr4 127645278 127645365 -27984755 + B1F SINE Alu 62 148 -1 2 1558 465 50 0 0 chr4 127645939 127645999 -27984121 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1558 257 318 29 61 chr4 127646194 127646365 -27983755 - MIRc SINE MIR -64 204 36 2 1558 336 202 101 0 chr4 127646920 127646999 -27983121 + MIR SINE MIR 130 216 -46 2 1558 537 153 26 65 chr4 127649888 127650013 -27980107 + B1F1 SINE Alu 2 121 -26 2 1558 249 108 0 0 chr4 127650527 127650564 -27979556 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1558 240 197 59 29 chr4 127650688 127650756 -27979364 - MER3 DNA MER1_type -20 189 120 2 1558 612 232 14 21 chr4 127650766 127650911 -27979209 + B4A SINE B4 9 152 -140 2 1558 1754 229 12 67 chr4 127650911 127651332 -27978788 + MTD LTR MaLR 1 398 -21 2 1558 531 238 45 15 chr4 127651354 127651486 -27978634 + B4A SINE B4 157 292 0 2 1558 268 256 97 32 chr4 127651519 127651612 -27978508 - MER3 DNA MER1_type -63 146 48 2 1558 237 279 33 0 chr4 127651773 127651834 -27978286 - MLT1C LTR MaLR -59 408 346 2 1558 1150 245 12 127 chr4 127651873 127652299 -27977821 + MTE2a LTR MaLR 3 379 0 2 1558 556 239 37 7 chr4 127652394 127652475 -27977645 + B4 SINE B4 1 85 -207 2 1558 218 248 63 120 chr4 127652475 127652617 -27977503 + B1_Mus1 SINE Alu 1 134 -14 2 1558 598 176 14 0 chr4 127652769 127652917 -27977203 + (TG)n Simple_repeat Simple_repeat 1 150 0 2 1558 592 235 0 0 chr4 127652991 127653123 -27976997 - B4A SINE B4 0 292 161 3 1558 187 305 17 0 chr4 127653347 127653406 -27976714 - L2c LINE L2 -41 3334 3275 3 1558 294 333 36 18 chr4 127653500 127653610 -27976510 + MIR SINE MIR 65 176 -86 3 1558 306 0 0 0 chr4 127653629 127653663 -27976457 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1558 596 258 53 41 chr4 127653800 127653970 -27976150 - ID_B1 SINE B4 -52 172 1 3 1558 531 210 0 105 chr4 127654187 127654300 -27975820 + B1F2 SINE Alu 31 136 -13 3 1558 306 0 0 0 chr4 127654300 127654334 -27975786 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 1558 531 210 0 105 chr4 127654334 127654353 -27975767 + B1F2 SINE Alu 137 149 0 3 1558 1241 258 17 45 chr4 127654367 127654789 -27975331 - ORSL-2b DNA Tip100 -48 460 51 3 1558 355 183 0 40 chr4 127655274 127655348 -27974772 + ID4 SINE ID 3 73 -10 3 1558 633 27 0 0 chr4 127655351 127655426 -27974694 + (CCAA)n Simple_repeat Simple_repeat 2 76 0 3 1558 1828 182 55 35 chr4 127655600 127656033 -27974087 - RMER10A LTR ERVL 0 442 1 3 1558 1538 187 86 17 chr4 127656183 127656532 -27973588 + MTD LTR MaLR 47 419 0 3 1558 204 83 0 53 chr4 127656828 127656866 -27973254 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 3 1558 760 336 25 14 chr4 127656866 127657141 -27972979 - L4 LINE RTE -263 1766 1489 3 1558 256 327 10 0 chr4 127657192 127657293 -27972827 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 3 1558 226 309 15 0 chr4 127657311 127657379 -27972741 - ORR1E LTR MaLR 0 379 311 3 1558 541 277 83 6 chr4 127657402 127657558 -27972562 - ORR1E LTR MaLR -189 170 3 3 1558 234 284 0 24 chr4 127657612 127657695 -27972425 - L2c LINE L2 -257 3130 3050 3 1558 196 364 60 98 chr4 127658480 127658663 -27971457 + L2b LINE L2 3200 3375 0 3 1558 369 339 280 24 chr4 127658724 127658973 -27971147 - MLT1J LTR MaLR -33 415 103 3 1558 571 269 50 45 chr4 127659002 127659204 -27970916 - MER20 DNA MER1_type -15 204 2 3 1558 508 174 25 190 chr4 127659212 127659375 -27970745 + B1_Mur3 SINE Alu 1 136 -13 3 1558 232 159 48 0 chr4 127661054 127661117 -27969003 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 3 1558 706 278 29 47 chr4 127661272 127661551 -27968569 + MLT1B LTR MaLR 1 274 -116 3 1558 375 154 17 71 chr4 127661767 127661886 -27968234 + ORR1A4 LTR MaLR 1 146 -248 3 1558 1493 154 68 7 chr4 127661936 127662217 -27967903 + ORR1A4 LTR MaLR 32 329 0 3 1558 310 191 18 48 chr4 127662417 127662521 -27967599 + L2a LINE L2 3291 3426 0 3 1559 189 0 0 0 chr4 127664137 127664158 -27965962 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1559 435 148 0 0 chr4 127664699 127664787 -27965333 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 1559 23 0 0 0 chr4 127665042 127665065 -27965055 + GC_rich Low_complexity Low_complexity 1 23 0 3 1559 258 32 0 0 chr4 127665209 127665240 -27964880 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1559 258 192 0 0 chr4 127665427 127665479 -27964641 + (CCG)n Simple_repeat Simple_repeat 3 54 0 3 1559 453 66 0 0 chr4 127667693 127667754 -27962366 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1559 600 14 0 0 chr4 127668602 127668671 -27961449 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1559 4413 53 0 4 chr4 127668700 127669234 -27960886 - L1Md_F2 LINE L1 -19 6563 6032 3 1559 369 0 0 0 chr4 127669899 127669940 -27960180 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1559 236 271 0 0 chr4 127670558 127670617 -27959503 - MIRb SINE MIR -187 81 23 3 1559 237 132 0 0 chr4 127671316 127671354 -27958766 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1559 289 245 65 113 chr4 127672154 127672278 -27957842 + MIRc SINE MIR 31 148 -120 3 1559 265 336 37 32 chr4 127673158 127673376 -27956744 - L1M5 LINE L1 -657 5537 5319 3 1559 297 209 132 15 chr4 127673389 127673457 -27956663 - ID4_ SINE ID -2 81 6 3 1559 448 238 139 0 chr4 127673474 127673575 -27956545 - PB1 SINE Alu 0 127 13 3 1559 333 47 0 0 chr4 127673604 127673647 -27956473 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1559 944 210 79 10 chr4 127673664 127673866 -27956254 - B3 SINE B2 0 216 1 3 1559 329 330 148 25 chr4 127674041 127674237 -27955883 - ID_B1 SINE B4 -1 223 4 3 1559 1577 257 33 3 chr4 127674685 127675048 -27955072 - MTE2b LTR MaLR -5 374 1 3 1559 393 146 72 7 chr4 127675048 127675200 -27954920 + (TATG)n Simple_repeat Simple_repeat 3 164 0 3 1559 267 185 0 0 chr4 127675774 127675828 -27954292 + L1MB4 LINE L1 6123 6176 -4 3 1559 814 122 135 15 chr4 127677170 127677303 -27952817 + B1_Mur3 SINE Alu 1 149 0 3 1559 200 111 21 43 chr4 127677307 127677354 -27952766 + A-rich Low_complexity Low_complexity 2 47 0 3 1559 729 88 0 0 chr4 127677563 127677665 -27952455 + (CCTG)n Simple_repeat Simple_repeat 2 103 0 3 1559 276 200 0 0 chr4 127678510 127678570 -27951550 + (CCCA)n Simple_repeat Simple_repeat 1 60 0 3 1559 831 201 0 0 chr4 127678567 127678746 -27951374 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 3 1559 339 345 18 9 chr4 127678854 127678968 -27951152 + MER5A1 DNA MER1_type 45 159 -7 3 1559 303 287 92 0 chr4 127679162 127679249 -27950871 + L2a LINE L2 3329 3423 -3 3 1559 357 86 0 0 chr4 127681512 127681570 -27948550 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1559 218 37 0 0 chr4 127681570 127681597 -27948523 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1559 341 316 0 40 chr4 127681648 127681747 -27948373 - B4A SINE B4 -197 95 1 3 1559 707 266 78 10 chr4 127682282 127682487 -27947633 - Charlie19a DNA Charlie -154 232 14 3 1559 370 299 205 16 chr4 127682544 127682734 -27947386 - LTR79 LTR ERVL -32 495 270 3 1559 243 345 82 35 chr4 127683990 127684161 -27945959 - MIRm SINE MIR -32 244 66 3 1559 372 267 75 33 chr4 127684347 127684497 -27945623 - MIRb SINE MIR -81 181 33 3 1559 21 0 0 0 chr4 127685125 127685146 -27944974 + AT_rich Low_complexity Low_complexity 1 21 0 3 1559 198 373 0 0 chr4 127685526 127685593 -27944527 + L2a LINE L2 3347 3413 -13 3 1559 1079 249 36 85 chr4 127686585 127686892 -27943228 + B4 SINE B4 1 292 0 3 1559 193 29 29 29 chr4 127686907 127686942 -27943178 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1559 468 35 0 0 chr4 127687004 127687062 -27943058 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 3 1559 222 37 0 0 chr4 127687062 127687088 -27943032 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1559 525 319 16 10 chr4 127687380 127687573 -27942547 + L1M5 LINE L1 5501 5694 -430 3 1559 306 286 83 28 chr4 127688095 127688203 -27941917 + MIRb SINE MIR 7 120 -148 3 1559 984 68 0 0 chr4 127688322 127688468 -27941652 + (CA)n Simple_repeat Simple_repeat 2 147 0 3 1559 196 309 42 42 chr4 127689593 127689664 -27940456 + MIRm SINE MIR 165 235 -41 3 1559 294 289 0 24 chr4 127689767 127689852 -27940268 - MTEb LTR MaLR -18 361 279 3 1559 525 286 39 0 chr4 127689982 127690136 -27939984 - B4A SINE B4 0 292 133 3 1559 2233 75 58 6 chr4 127690161 127690472 -27939648 - ORR1A2 LTR MaLR 0 327 1 3 1559 1008 86 29 0 chr4 127691269 127691408 -27938712 + B1_Mur4 SINE Alu 7 149 -1 3 1559 458 46 0 15 chr4 127691750 127691816 -27938304 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1559 678 302 118 42 chr4 127691819 127692082 -27938038 - B4A SINE B4 -8 284 2 3 1559 352 299 108 27 chr4 127692083 127692314 -27937806 - L1MD LINE L1 -723 5401 5156 3 1559 390 94 0 0 chr4 127692384 127692448 -27937672 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1559 923 145 14 7 chr4 127692456 127692602 -27937518 - B1_Mus1 SINE Alu 0 148 2 3 1559 400 176 57 43 chr4 127693398 127693510 -27936610 + PB1D7 SINE Alu 1 115 -32 3 1559 283 305 238 48 chr4 127693730 127693960 -27936160 - MLT2B3 LTR ERVL -276 278 2 3 1559 1314 196 26 97 chr4 127694462 127694813 -27935307 + ORR1E LTR MaLR 21 346 -13 3 1559 396 195 35 17 chr4 127695178 127695350 -27934770 + CT-rich Low_complexity Low_complexity 1 175 0 3 1559 267 169 60 20 chr4 127695396 127695547 -27934573 + CT-rich Low_complexity Low_complexity 1 157 0 3 1559 184 314 161 81 chr4 127695700 127695849 -27934271 + L2a LINE L2 3264 3424 -2 3 1559 470 263 45 57 chr4 127695883 127696118 -27934002 - MIRb SINE MIR 0 262 16 3 1559 587 26 13 0 chr4 127696510 127696587 -27933533 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1559 204 40 0 0 chr4 127698068 127698093 -27932027 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1559 1013 206 24 24 chr4 127698104 127698313 -27931807 + B3 SINE B2 3 211 -5 3 1559 362 180 268 9 chr4 127698329 127698441 -27931679 + B1F2 SINE Alu 1 141 -8 3 1559 1023 250 0 9 chr4 127698452 127698670 -27931450 + B3 SINE B2 1 216 0 3 1559 347 273 0 0 chr4 127698691 127698757 -27931363 + B4A SINE B4 222 287 -5 3 1559 564 250 37 95 chr4 127699573 127699604 -27930516 - CYRA11_Mm Unknown Y-chromosome -216 401 173 3 1559 1297 135 5 19 chr4 127699604 127699816 -27930304 + URR1A DNA MER1_type 16 224 -2 3 1559 208 319 27 34 chr4 127700862 127700910 -27929210 + (CATG)n Simple_repeat Simple_repeat 4 53 0 3 1559 189 74 0 0 chr4 127700910 127700937 -27929183 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1559 208 319 27 34 chr4 127700937 127701037 -27929083 + (CATG)n Simple_repeat Simple_repeat 2 99 0 3 1559 513 47 0 0 chr4 127701443 127701507 -27928613 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1559 25 31 0 0 chr4 127701563 127701595 -27928525 + AT_rich Low_complexity Low_complexity 1 32 0 3 1559 817 240 34 0 chr4 127701607 127701782 -27928338 - B3A SINE B2 -15 183 3 3 1559 347 316 10 10 chr4 127701784 127701880 -27928240 - B4A SINE B4 -196 96 1 3 1559 638 165 0 0 chr4 127701952 127702055 -27928065 - B1_Mur3 SINE Alu -5 144 42 4 1559 492 153 0 0 chr4 127702055 127702140 -27927980 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 4 1559 375 250 0 0 chr4 127702131 127702295 -27927825 + (TCTG)n Simple_repeat Simple_repeat 1 164 0 4 1559 470 209 0 0 chr4 127702322 127702413 -27927707 + (TCTCTG)n Simple_repeat Simple_repeat 5 95 0 4 1559 340 102 16 63 chr4 127702413 127702476 -27927644 - B1_Mus1 SINE Alu -88 60 1 4 1559 647 234 23 51 chr4 127702658 127702834 -27927286 - MamRep564 Unknown Unknown -113 244 74 4 1559 476 159 45 0 chr4 127703331 127703488 -27926632 + (TGGA)n Simple_repeat Simple_repeat 1 164 0 4 1559 317 316 73 62 chr4 127704398 127704577 -27925543 - MER20 DNA MER1_type -32 187 7 4 1559 253 279 49 39 chr4 127704882 127704991 -27925129 - MER5A DNA MER1_type -54 135 16 4 1559 225 184 20 20 chr4 127705947 127705997 -27924123 - L1MB1 LINE L1 -83 6106 6057 4 1559 362 57 0 19 chr4 127705997 127706051 -27924069 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1559 531 255 68 142 chr4 127706108 127706419 -27923701 - B4A SINE B4 -4 288 1 4 1559 701 252 87 14 chr4 127706457 127706820 -27923300 + MTD LTR MaLR 8 419 0 4 1559 603 350 41 19 chr4 127706843 127707259 -27922861 - L1MB2 LINE L1 -170 6001 5577 4 1559 1851 215 27 6 chr4 127707366 127707731 -27922389 - ORR1D1 LTR MaLR -1 373 1 4 1559 360 262 127 45 chr4 127707776 127707961 -27922159 - L1M3 LINE L1 -713 5465 5273 4 1559 404 326 5 148 chr4 127707965 127707986 -27922134 - B3 SINE B2 -29 187 173 4 1559 588 95 0 0 chr4 127707986 127708070 -27922050 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1559 499 309 0 126 chr4 127708070 127708189 -27921931 - B3A SINE B2 -44 172 62 4 1559 1765 92 4 22 chr4 127708189 127708456 -27921664 + L1Md_F2 LINE L1 6321 6582 0 4 1559 499 308 0 124 chr4 127708456 127708523 -27921597 - B3A SINE B2 -129 69 9 4 1559 676 319 36 54 chr4 127708530 127708860 -27921260 - L1M3 LINE L1 -864 5276 4949 4 1559 1159 157 26 69 chr4 127708860 127709093 -27921027 + URR1B DNA MER1_type 2 224 -1 4 1559 676 319 36 54 chr4 127709093 127709296 -27920824 - L1M3 LINE L1 -1192 4948 4753 4 1559 700 277 5 41 chr4 127709423 127709619 -27920501 - B3A SINE B2 -2 196 8 4 1559 1805 226 19 17 chr4 127709703 127710121 -27919999 + MTD LTR MaLR 1 419 0 4 1559 414 264 194 32 chr4 127710172 127710481 -27919639 - L1MA4 LINE L1 -413 6589 6231 4 1559 230 259 0 47 chr4 127710501 127710586 -27919534 + CT-rich Low_complexity Low_complexity 2 82 0 4 1559 461 171 0 0 chr4 127710587 127710688 -27919432 - B1_Mur4 SINE Alu 0 150 49 4 1559 2738 283 120 71 chr4 127710689 127712515 -27917605 - L1MA4 LINE L1 -1453 5392 3468 4 1559 515 319 0 42 chr4 127712515 127712682 -27917438 - RSINE1 SINE B4 -2 163 4 4 1559 207 0 0 0 chr4 127712687 127712710 -27917410 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1559 1184 57 0 0 chr4 127712710 127712850 -27917270 - B1_Mus1 SINE Alu -8 140 1 4 1559 2738 271 99 56 chr4 127712850 127713528 -27916592 - L1MA4 LINE L1 -3375 3467 2750 4 1559 418 179 11 45 chr4 127713532 127713620 -27916500 - MTD LTR MaLR 0 379 295 4 1559 696 242 19 19 chr4 127713602 127713762 -27916358 - MTD LTR MaLR -250 169 10 4 1559 360 111 0 0 chr4 127713940 127713994 -27916126 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1559 1394 273 82 41 chr4 127714154 127714892 -27915228 - L1MA4 LINE L1 -4159 2690 1532 4 1559 602 216 83 114 chr4 127714892 127715085 -27915035 - B3A SINE B2 -10 188 2 4 1559 875 314 65 63 chr4 127715085 127715288 -27914832 - L1MA4 LINE L1 -4910 1939 1751 4 1559 408 278 52 0 chr4 127715918 127716015 -27914105 - PB1D7 SINE Alu 0 120 19 4 1559 264 265 39 48 chr4 127716021 127716124 -27913996 - L1MA4 LINE L1 -6039 740 639 4 1559 411 218 109 82 chr4 127716142 127716252 -27913868 - PB1D10 SINE Alu -4 123 4 4 1559 316 338 39 55 chr4 127717225 127717482 -27912638 + RMER17C LTR ERVK 112 364 -46 4 1559 279 0 0 0 chr4 127717946 127717977 -27912143 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1559 212 122 41 0 chr4 127717996 127718045 -27912075 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1559 540 324 88 56 chr4 127718777 127719241 -27910879 - L2a LINE L2 -1 3425 2947 4 1559 463 275 41 16 chr4 127720352 127720474 -27909646 - RSINE1 SINE B4 -21 144 20 4 1559 266 212 10 0 chr4 127720966 127721065 -27909055 + (TCCA)n Simple_repeat Simple_repeat 3 102 0 4 1559 544 304 48 29 chr4 127721076 127721283 -27908837 + MIR SINE MIR 6 216 -46 4 1559 327 65 0 0 chr4 127722325 127722371 -27907749 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1559 345 24 0 0 chr4 127722467 127722509 -27907611 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1559 697 285 88 46 chr4 127722571 127722747 -27907373 - B4A SINE B4 -20 272 88 4 1559 384 22 0 0 chr4 127722747 127722792 -27907328 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 1559 697 285 88 46 chr4 127722792 127722854 -27907266 - B4A SINE B4 -205 87 24 4 1559 381 228 30 24 chr4 127722860 127722974 -27907146 - L1MA4A LINE L1 -365 5932 5821 4 1559 997 288 109 18 chr4 127723220 127723613 -27906507 + Charlie4a DNA MER1_type 29 457 -51 4 1559 402 21 0 0 chr4 127723631 127723678 -27906442 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1559 526 251 103 59 chr4 127723751 127723954 -27906166 + MER20 DNA MER1_type 1 212 -7 4 1559 1972 292 134 60 chr4 127724214 127725028 -27905092 - MER54A LTR ERVL -5 896 23 4 1559 182 323 92 87 chr4 127725090 127725297 -27904823 - L2b LINE L2 -124 3251 3044 4 1559 399 283 17 0 chr4 127726315 127726435 -27903685 + L2 LINE L2 2343 2464 -955 4 1559 264 275 86 20 chr4 127726506 127726658 -27903462 + L1MC4a LINE L1 4188 4349 -1797 4 1559 333 0 0 0 chr4 127726843 127726880 -27903240 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 4 1559 231 284 102 42 chr4 127727342 127727463 -27902657 - MIRc SINE MIR -142 134 13 4 1559 266 321 69 35 chr4 127727849 127727994 -27902126 - L2a LINE L2 0 3426 3277 4 1559 368 222 0 0 chr4 127728815 127728887 -27901233 + PB1D10 SINE Alu 46 117 0 4 1559 405 102 0 0 chr4 127728907 127728966 -27901154 + (GGA)n Simple_repeat Simple_repeat 2 60 0 4 1559 255 318 11 43 chr4 127728986 127729078 -27901042 + B4A SINE B4 9 97 -195 4 1559 285 154 241 13 chr4 127729091 127729170 -27900950 + B4A SINE B4 148 244 -48 4 1559 342 0 0 0 chr4 127729229 127729267 -27900853 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1559 333 0 0 0 chr4 127729267 127729303 -27900817 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1559 336 373 29 29 chr4 127729365 127729539 -27900581 + L1MC4a LINE L1 5494 5667 -457 4 1559 209 196 0 0 chr4 127729540 127729591 -27900529 + A-rich Low_complexity Low_complexity 1 51 0 4 1559 955 134 0 14 chr4 127729600 127729744 -27900376 + B1_Mus1 SINE Alu 2 143 -5 4 1559 339 321 27 16 chr4 127730381 127730568 -27899552 + L1MC4a LINE L1 5712 5900 -1982 4 1559 2213 118 12 18 chr4 127731466 127731794 -27898326 - ORR1A3 LTR MaLR 0 326 1 4 1559 285 222 15 7 chr4 127732377 127732513 -27897607 + (CA)n Simple_repeat Simple_repeat 1 137 0 4 1559 1585 27 33 0 chr4 127732630 127732813 -27897307 - B2_Mm1a SINE B2 -4 189 1 4 1559 201 162 0 0 chr4 127732923 127732960 -27897160 + T-rich Low_complexity Low_complexity 5 41 0 4 1559 311 212 0 12 chr4 127732995 127733081 -27897039 + CT-rich Low_complexity Low_complexity 3 87 0 4 1559 680 61 0 10 chr4 127733473 127733572 -27896548 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 4 1559 250 292 41 14 chr4 127733572 127733645 -27896475 - ID4 SINE ID 0 83 9 4 1559 346 364 118 9 chr4 127733662 127733873 -27896247 - L1M2 LINE L1 -1703 4440 4207 4 1559 254 339 83 0 chr4 127734300 127734421 -27895699 + MIR SINE MIR 57 187 -75 4 1559 183 313 70 85 chr4 127734690 127734889 -27895231 - L2 LINE L2 -468 2951 2756 4 1559 259 281 0 0 chr4 127736670 127736734 -27893386 - RMER15 LTR ERVL -109 466 403 4 1559 383 316 50 7 chr4 127736735 127736875 -27893245 - Lx8 LINE L1 -207 7266 7121 4 1559 381 254 86 14 chr4 127736933 127737034 -27893086 - PB1D10 SINE Alu -3 114 11 4 1559 2855 35 9 9 chr4 127737727 127738069 -27892051 + ORR1A1 LTR MaLR 1 342 -4 4 1559 3271 69 30 1 chr4 127738072 127738673 -27891447 + ORR1A1-int LTR MaLR 1 443 -1349 4 1559 389 243 27 93 chr4 127738880 127739030 -27891090 - L2b LINE L2 0 3375 3236 4 1559 308 295 137 20 chr4 127739682 127740006 -27890114 - L1MD LINE L1 -2896 3250 2891 4 1559 570 304 112 61 chr4 127740431 127740708 -27889412 - B4 SINE B4 0 292 2 4 1559 489 127 0 0 chr4 127740753 127740832 -27889288 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1559 842 243 17 17 chr4 127740838 127741010 -27889110 - B3A SINE B2 -26 172 1 4 1559 22 0 0 0 chr4 127741158 127741180 -27888940 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 251 287 121 9 chr4 127741719 127741835 -27888285 - L1M4 LINE L1 -1736 4410 4282 4 1559 324 314 105 16 chr4 127741866 127742057 -27888063 - L1M4 LINE L1 -1941 4205 3998 4 1559 225 229 51 103 chr4 127742660 127742777 -27887343 - RMER12 LTR ERVK -499 823 713 4 1559 202 331 33 93 chr4 127743770 127743953 -27886167 + MIR SINE MIR 77 248 -14 4 1559 450 0 0 0 chr4 127744049 127744099 -27886021 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1559 425 200 0 0 chr4 127744109 127744179 -27885941 - ID4 SINE ID -11 72 3 4 1559 420 335 59 0 chr4 127744184 127744336 -27885784 + MER20 DNA MER1_type 58 218 -1 4 1559 423 236 30 82 chr4 127744336 127744470 -27885650 + MIRc SINE MIR 23 149 -119 4 1559 382 320 92 27 chr4 127745590 127745778 -27884342 - L2c LINE L2 -17 3370 3139 4 1559 398 278 154 62 chr4 127745885 127746129 -27883991 - MTEb LTR MaLR 0 379 96 4 1559 291 310 99 68 chr4 127746386 127746593 -27883527 + L2a LINE L2 3149 3426 0 4 1559 1350 56 0 0 chr4 127746596 127746776 -27883344 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 4 1559 342 115 0 0 chr4 127747218 127747270 -27882850 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 4 1559 739 246 48 14 chr4 127747368 127747578 -27882542 - MER121 Unknown Unknown -149 263 47 4 1559 1200 94 0 12 chr4 127748799 127748971 -27881149 + B2_Mm2 SINE B2 1 170 -25 4 1559 315 0 0 0 chr4 127748997 127749032 -27881088 + (TGG)n Simple_repeat Simple_repeat 3 37 0 4 1559 545 245 24 16 chr4 127749139 127749305 -27880815 + RMER20B LTR ERVK 1 160 -356 4 1559 360 0 0 0 chr4 127749348 127749388 -27880732 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1559 295 218 7 185 chr4 127749457 127749592 -27880528 - PB1 SINE Alu -5 122 12 5 1559 965 216 5 35 chr4 127749491 127749688 -27880432 - ID_B1 SINE B4 -31 193 3 5 1559 313 287 138 32 chr4 127749955 127750154 -27879966 + MLT1J1 LTR MaLR 3 226 -222 5 1559 386 195 11 0 chr4 127750563 127750650 -27879470 + CT-rich Low_complexity Low_complexity 1 88 0 5 1559 371 256 0 49 chr4 127750670 127750752 -27879368 - ID4_ SINE ID -1 82 5 5 1559 371 276 88 15 chr4 127750754 127750890 -27879230 - B1F1 SINE Alu -3 146 1 5 1559 268 287 69 62 chr4 127751001 127751131 -27878989 + MIR SINE MIR 15 145 -117 5 1559 834 276 42 35 chr4 127751134 127751393 -27878727 + MTD LTR MaLR 1 261 -158 5 1559 308 203 0 0 chr4 127751393 127751452 -27878668 - MERVL-int LTR ERVL -973 4512 4454 5 1559 565 248 8 8 chr4 127751458 127751580 -27878540 + MTD LTR MaLR 268 389 -30 5 1559 670 291 0 0 chr4 127751946 127752111 -27878009 + RSINE1 SINE B4 1 165 0 5 1559 234 328 94 60 chr4 127751950 127752151 -27877969 + B3 SINE B2 4 211 -5 5 1559 426 182 38 25 chr4 127752671 127752750 -27877370 - B4 SINE B4 -22 270 191 5 1559 232 100 96 39 chr4 127752717 127752769 -27877351 - PB1D9 SINE Alu -5 115 61 5 1559 455 259 107 14 chr4 127752771 127752986 -27877134 - L1MD3 LINE L1 -1598 6397 6163 5 1559 985 262 57 3 chr4 127752984 127753283 -27876837 + Lx5 LINE L1 6692 7006 -44 5 1559 262 287 42 21 chr4 127753283 127753379 -27876741 - L1MD3 LINE L1 -1646 6139 6042 5 1559 342 116 44 44 chr4 127753432 127753567 -27876553 + (TG)n Simple_repeat Simple_repeat 1 135 0 5 1559 771 258 101 50 chr4 127753567 127753845 -27876275 - B4 SINE B4 0 292 1 5 1559 274 279 191 2 chr4 127754393 127754562 -27875558 + L2b LINE L2 3223 3424 -2 5 1559 1187 290 65 8 chr4 127755155 127755510 -27874610 + MTE2b LTR MaLR 1 375 -4 5 1559 590 257 47 6 chr4 127755517 127755689 -27874431 - MER2 DNA MER2_type -40 305 127 5 1559 234 355 109 45 chr4 127756769 127756990 -27873130 - LTR89 LTR ERVL? -576 303 69 5 1559 228 275 229 64 chr4 127757024 127757164 -27872956 - MIRb SINE MIR -21 247 85 5 1559 203 61 0 29 chr4 127757908 127757942 -27872178 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 1559 288 267 108 8 chr4 127758075 127758194 -27871926 + MIRb SINE MIR 37 161 -47 5 1559 740 177 54 13 chr4 127758636 127758785 -27871335 + RSINE1 SINE B4 2 156 -9 5 1559 556 52 39 0 chr4 127759582 127759659 -27870461 - ORR1A4 LTR MaLR -8 321 242 5 1559 542 250 0 67 chr4 127759660 127759810 -27870310 + ORR1A4 LTR MaLR 1 140 -189 5 1559 293 306 54 0 chr4 127760169 127760260 -27869860 - MIRb SINE MIR -62 200 103 5 1559 272 304 35 24 chr4 127761953 127762106 -27868014 - MER20 DNA MER1_type -1 218 30 5 1559 877 248 94 20 chr4 127763655 127763857 -27866263 - ID_B1 SINE B4 0 224 8 5 1559 302 267 0 34 chr4 127763995 127764084 -27866036 + (CACCAT)n Simple_repeat Simple_repeat 4 89 0 5 1559 243 0 0 0 chr4 127764159 127764186 -27865934 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1559 1049 83 23 0 chr4 127764186 127764318 -27865802 - B1_Mus1 SINE Alu -13 135 1 5 1559 331 289 122 29 chr4 127764327 127764466 -27865654 - MIR SINE MIR -97 165 14 5 1559 276 286 65 11 chr4 127765624 127765716 -27864404 + LTR16C LTR ERVL 390 486 -3 5 1559 252 343 20 10 chr4 127765765 127765865 -27864255 - MIR SINE MIR -18 244 144 5 1559 1027 275 21 24 chr4 127765951 127766238 -27863882 + B4A SINE B4 7 292 0 5 1559 401 0 20 0 chr4 127766270 127766319 -27863801 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1559 498 17 0 0 chr4 127766822 127766881 -27863239 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1559 688 294 37 121 chr4 127767348 127767530 -27862590 + B4A SINE B4 2 167 -125 5 1559 189 0 0 0 chr4 127767530 127767551 -27862569 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 1559 688 294 37 121 chr4 127767551 127767666 -27862454 + B4A SINE B4 168 273 -19 5 1559 694 263 66 0 chr4 127767815 127767967 -27862153 - RSINE1 SINE B4 0 165 4 5 1559 220 345 70 70 chr4 127768881 127769037 -27861083 - L2a LINE L2 -18 3408 3253 5 1559 909 250 94 63 chr4 127769062 127769431 -27860689 - MLT2B4 LTR ERVL -54 513 15 5 1559 774 328 33 11 chr4 127769431 127769702 -27860418 + B4 SINE B4 2 278 -14 5 1559 291 28 0 0 chr4 127769789 127769825 -27860295 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1559 1470 263 84 65 chr4 127769867 127770510 -27859610 - ERVL-B4-int LTR ERVL -2 5712 5058 5 1559 595 309 100 0 chr4 127770556 127770815 -27859305 - ERVL-B4-int LTR ERVL -734 4980 4696 5 1559 460 326 148 93 chr4 127770817 127771249 -27858871 - MT2A LTR ERVL -1 514 59 5 1559 228 263 89 38 chr4 127771552 127771631 -27858489 - ID4_ SINE ID 0 83 1 5 1559 282 312 175 10 chr4 127772406 127772503 -27857617 + RSINE1 SINE B4 14 126 -39 5 1559 578 343 72 44 chr4 127772548 127773171 -27856949 - L2a LINE L2 -146 3280 2636 5 1559 894 45 0 0 chr4 127773178 127773289 -27856831 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 1559 270 0 0 0 chr4 127773289 127773318 -27856802 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1559 710 244 150 0 chr4 127773360 127773553 -27856567 - B4A SINE B4 -69 223 2 5 1559 226 336 0 76 chr4 127773562 127773681 -27856439 + L2b LINE L2 3276 3385 -2 5 1559 297 0 0 0 chr4 127774013 127774046 -27856074 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1559 720 224 19 13 chr4 127774110 127774264 -27855856 + B4A SINE B4 10 164 -128 5 1559 761 235 0 7 chr4 127774274 127774411 -27855709 + RSINE1 SINE B4 13 148 -17 5 1559 389 0 0 56 chr4 127774612 127774666 -27855454 + (GGGAGA)n Simple_repeat Simple_repeat 5 55 0 5 1559 3850 174 14 33 chr4 127774750 127774866 -27855254 - RMER1A Other Other -6 1024 919 5 1559 405 0 0 0 chr4 127774866 127774911 -27855209 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1559 3850 225 53 38 chr4 127774911 127776428 -27853692 - RMER1A Other Other -112 918 1 5 1559 189 0 0 0 chr4 127777859 127777880 -27852240 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1559 800 293 12 37 chr4 127778182 127778423 -27851697 - B4 SINE B4 -51 241 7 5 1559 288 236 0 0 chr4 127778831 127778886 -27851234 - B4A SINE B4 -20 272 218 5 1559 522 31 0 0 chr4 127778886 127778950 -27851170 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1559 874 181 11 68 chr4 127778955 127779145 -27850975 - B2_Mm2 SINE B2 -8 187 9 5 1559 325 292 41 66 chr4 127779140 127779261 -27850859 - B4A SINE B4 -60 232 115 5 1559 191 125 25 0 chr4 127779389 127779429 -27850691 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 5 1559 471 90 0 0 chr4 127779719 127779797 -27850323 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1559 441 0 0 0 chr4 127779797 127779845 -27850275 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1559 644 316 84 54 chr4 127780551 127780885 -27849235 - ORR1E LTR MaLR -2 357 14 5 1559 296 270 51 87 chr4 127781495 127781633 -27848487 + MLT2B3 LTR ERVL 102 234 -320 5 1559 1318 222 31 0 chr4 127781510 127781771 -27848349 + MTE2b LTR MaLR 90 358 -21 5 1559 265 321 30 15 chr4 127781773 127781906 -27848214 - L1MC4a LINE L1 -17 7865 7731 5 1559 353 279 149 27 chr4 127782586 127782774 -27847346 - L1MD2 LINE L1 -229 6130 5920 5 1559 541 236 28 0 chr4 127782789 127782895 -27847225 + ID_B1 SINE B4 98 206 -18 5 1559 259 243 39 139 chr4 127782895 127782917 -27847203 + MT2B LTR ERVL 181 295 -306 5 1559 648 316 28 51 chr4 127782981 127783391 -27846729 - L1MD2 LINE L1 -309 5933 5534 5 1559 1376 295 75 55 chr4 127783481 127784226 -27845894 - Lx9 LINE L1 -2 7642 6883 5 1559 325 207 36 22 chr4 127784231 127784369 -27845751 - L1MD2 LINE L1 -805 5437 5298 5 1559 346 270 71 0 chr4 127784364 127784490 -27845630 - L1MD2 LINE L1 -2057 4089 3955 5 1559 363 174 20 30 chr4 127784490 127784591 -27845529 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 5 1559 819 254 109 36 chr4 127784603 127785024 -27845096 - L1MD2 LINE L1 -2197 3949 3498 5 1559 610 268 72 57 chr4 127785044 127785238 -27844882 - B3A SINE B2 0 198 2 5 1559 2011 73 14 11 chr4 127785503 127785779 -27844341 + L1Md_F2 LINE L1 6301 6577 -5 5 1559 261 273 56 0 chr4 127785927 127786088 -27844032 + (TATATG)n Simple_repeat Simple_repeat 6 175 0 5 1559 239 273 45 23 chr4 127786115 127786291 -27843829 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 1559 286 306 41 6 chr4 127786250 127786421 -27843699 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1559 30 0 0 0 chr4 127786465 127786495 -27843625 + AT_rich Low_complexity Low_complexity 1 30 0 5 1559 835 197 112 83 chr4 127786498 127786703 -27843417 - B3 SINE B2 -5 211 1 5 1559 910 263 36 0 chr4 127786703 127786924 -27843196 - B4A SINE B4 -62 230 2 5 1559 973 235 9 57 chr4 127786939 127787169 -27842951 - B4 SINE B4 -73 219 1 5 1559 351 0 0 0 chr4 127787309 127787348 -27842772 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1559 340 234 0 59 chr4 127788010 127788196 -27841924 + (TATG)n Simple_repeat Simple_repeat 4 178 0 5 1559 294 290 0 0 chr4 127788228 127788297 -27841823 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1559 218 204 0 18 chr4 127788844 127788859 -27841261 + (CATA)n Simple_repeat Simple_repeat 1 15 0 5 1559 339 130 0 0 chr4 127788859 127788913 -27841207 + (TATG)n Simple_repeat Simple_repeat 3 56 0 5 1559 221 154 26 0 chr4 127788913 127788952 -27841168 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1559 369 256 12 24 chr4 127788952 127789036 -27841084 - PB1D10 SINE Alu -27 90 8 5 1559 1648 36 5 0 chr4 127789555 127789747 -27840373 + B2_Mm1t SINE B2 1 193 0 5 1559 268 209 108 21 chr4 127790261 127790286 -27839834 - ORR1E LTR MaLR -226 133 106 5 1559 2486 159 32 10 chr4 127790286 127790698 -27839422 - MTC LTR MaLR 0 421 1 5 1559 268 209 108 21 chr4 127790698 127790765 -27839355 - ORR1E LTR MaLR -254 105 34 5 1559 306 0 0 0 chr4 127792523 127792557 -27837563 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1559 830 272 64 53 chr4 127792683 127792966 -27837154 - B4 SINE B4 -1 291 6 5 1559 599 335 27 24 chr4 127792990 127793323 -27836797 - L1MA5A LINE L1 -472 5825 5492 5 1559 420 259 92 43 chr4 127794039 127794202 -27835918 - MIRb SINE MIR -20 256 110 5 1559 276 336 76 9 chr4 127794580 127794685 -27835435 - B4 SINE B4 0 292 181 5 1559 640 258 6 77 chr4 127794791 127794972 -27835148 - B4 SINE B4 -123 169 2 5 1559 28 0 0 0 chr4 127794978 127795006 -27835114 + AT_rich Low_complexity Low_complexity 1 28 0 6 1560 683 293 77 45 chr4 127795430 127795834 -27834286 - L1M5 LINE L1 -454 5670 5254 6 1560 339 25 0 0 chr4 127796047 127796087 -27834033 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1560 685 315 138 27 chr4 127796107 127796368 -27833752 - B4 SINE B4 0 292 3 6 1560 527 233 50 0 chr4 127796699 127796819 -27833301 + B1F SINE Alu 1 126 -23 6 1560 219 281 0 30 chr4 127796837 127796903 -27833217 + ID4_ SINE ID 17 80 -3 6 1560 323 78 0 19 chr4 127797383 127797435 -27832685 + (TATG)n Simple_repeat Simple_repeat 4 54 0 6 1560 570 254 112 88 chr4 127797474 127797759 -27832361 - B4 SINE B4 0 292 1 6 1560 405 0 0 0 chr4 127800223 127800268 -27829852 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1560 383 247 21 11 chr4 127801435 127801529 -27828591 + ID_B1 SINE B4 2 96 -128 6 1560 625 324 41 16 chr4 127801638 127801979 -27828141 + L1ME4a LINE L1 5533 5882 -2000 6 1560 1038 209 15 10 chr4 127802118 127802316 -27827804 - B3 SINE B2 -14 202 4 6 1560 405 0 0 0 chr4 127802680 127802725 -27827395 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1560 227 132 0 50 chr4 127802852 127802892 -27827228 + Alu_5 SINE Alu 18 55 -120 6 1560 474 246 32 16 chr4 127802859 127802983 -27827137 + B1F SINE Alu 24 149 0 6 1560 255 296 69 30 chr4 127803035 127803136 -27826984 + L3 LINE CR1 4319 4423 -66 6 1560 307 346 0 0 chr4 127803176 127803280 -27826840 - MER104 DNA Tc2 -24 157 54 6 1560 211 157 55 73 chr4 127803467 127803522 -27826598 + MIRm SINE MIR 107 160 -116 6 1560 24 0 0 0 chr4 127804806 127804830 -27825290 + AT_rich Low_complexity Low_complexity 1 24 0 6 1560 203 0 37 0 chr4 127804874 127804901 -27825219 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 1560 1233 49 0 0 chr4 127804901 127805045 -27825075 - B1_Mus2 SINE Alu -3 144 1 6 1560 428 200 15 15 chr4 127805507 127805639 -27824481 + CT-rich Low_complexity Low_complexity 3 134 0 6 1560 405 0 0 0 chr4 127805639 127805684 -27824436 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1560 597 292 24 76 chr4 127805684 127805895 -27824225 - B4 SINE B4 -81 211 12 6 1560 444 229 68 25 chr4 127806545 127806706 -27823414 - L1M5 LINE L1 -338 5786 5619 6 1560 502 219 11 0 chr4 127808089 127808238 -27821882 + B3A SINE B2 3 186 -30 6 1560 782 265 29 24 chr4 127808432 127808612 -27821508 + B3 SINE B2 2 184 -32 6 1560 225 0 0 0 chr4 127808612 127808637 -27821483 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1560 782 265 29 24 chr4 127808637 127808661 -27821459 + B3 SINE B2 185 207 -9 6 1560 403 325 0 8 chr4 127809369 127809490 -27820630 + (TG)n Simple_repeat Simple_repeat 1 120 0 6 1560 1004 250 120 8 chr4 127809495 127809548 -27820572 - B4 SINE B4 -4 288 215 6 1560 243 61 0 0 chr4 127809548 127809581 -27820539 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 1560 1004 250 120 8 chr4 127809581 127809785 -27820335 - B4 SINE B4 -78 214 3 6 1560 297 288 0 24 chr4 127810518 127810600 -27819520 + Kanga11a DNA Tc2 891 970 0 6 1560 573 280 63 72 chr4 127811057 127811413 -27818707 + ORR1E LTR MaLR 1 379 0 6 1560 244 188 0 20 chr4 127811783 127811832 -27818288 + MIRb SINE MIR 221 268 0 6 1560 401 227 14 40 chr4 127812712 127812854 -27817266 - MIRc SINE MIR -16 246 110 6 1560 599 243 152 141 chr4 127812868 127813136 -27816984 - ORR1E LTR MaLR 0 359 107 6 1560 1652 224 29 21 chr4 127813136 127813511 -27816609 - MTE2b LTR MaLR 0 379 2 6 1560 599 243 152 141 chr4 127813511 127813597 -27816523 - ORR1E LTR MaLR -253 106 1 6 1560 341 302 159 45 chr4 127813918 127814119 -27816001 - HAL1b LINE L1 -194 1815 1592 6 1560 380 72 0 18 chr4 127814124 127814181 -27815939 + (CACCAT)n Simple_repeat Simple_repeat 5 60 0 6 1560 215 232 56 42 chr4 127814227 127814299 -27815821 - B4A SINE B4 -218 74 2 6 1560 639 265 0 8 chr4 127814395 127814528 -27815592 - B1_Mur1 SINE Alu -3 146 15 6 1560 334 245 51 102 chr4 127814435 127814553 -27815567 - MT2B LTR ERVL -341 260 149 6 1560 553 256 96 15 chr4 127814569 127814704 -27815416 - RSINE1 SINE B4 -5 160 15 6 1560 443 321 114 0 chr4 127814733 127814926 -27815194 - HAL1b LINE L1 -621 1388 1174 6 1560 247 317 57 39 chr4 127814988 127815111 -27815009 - L1M7 LINE L1 -4785 1433 1311 6 1560 216 0 0 0 chr4 127815111 127815135 -27814985 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1560 247 317 57 39 chr4 127815135 127815241 -27814879 - L1M7 LINE L1 -4908 1310 1200 6 1560 242 306 12 12 chr4 127815404 127815490 -27814630 + CT-rich Low_complexity Low_complexity 1 86 0 6 1560 22 35 0 0 chr4 127815573 127815602 -27814518 + AT_rich Low_complexity Low_complexity 1 29 0 6 1560 1016 202 64 0 chr4 127815996 127816199 -27813921 - B3 SINE B2 0 216 1 6 1560 268 272 36 15 chr4 127816930 127817030 -27813090 - PB1 SINE Alu -13 104 1 6 1560 216 250 0 0 chr4 127817055 127817107 -27813013 + CT-rich Low_complexity Low_complexity 2 53 0 6 1560 305 315 118 20 chr4 127817745 127817897 -27812223 + MER45A DNA Tip100 11 177 -1 6 1560 381 279 16 5 chr4 127819200 127819386 -27810734 + CT-rich Low_complexity Low_complexity 1 188 0 6 1560 1561 268 21 28 chr4 127820876 127821298 -27808822 - Lx8 LINE L1 -797 6676 6258 6 1560 444 329 80 96 chr4 127821304 127821634 -27808486 - ORR1D2 LTR MaLR -41 333 10 6 1560 817 245 0 52 chr4 127821991 127822163 -27807957 - RSINE1 SINE B4 0 165 3 6 1560 1520 121 9 22 chr4 127822938 127823166 -27806954 - URR1A DNA MER1_type 0 226 2 6 1560 860 280 167 0 chr4 127823185 127823424 -27806696 + B4A SINE B4 2 280 -12 6 1560 423 98 0 0 chr4 127823427 127823488 -27806632 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1560 332 243 28 30 chr4 127823591 127823779 -27806341 - L1M5 LINE L1 -652 5472 5286 6 1560 1299 105 0 3 chr4 127824091 127824383 -27805737 + (TGG)n Simple_repeat Simple_repeat 1 290 0 6 1560 391 265 12 117 chr4 127824566 127824737 -27805383 + MER53 DNA hAT 1 153 -40 6 1560 342 0 0 0 chr4 127825302 127825340 -27804780 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1560 1084 274 47 4 chr4 127825384 127825662 -27804458 - B4A SINE B4 -1 291 2 6 1560 463 326 128 57 chr4 127825670 127825966 -27804154 - L1ME1 LINE L1 -58 6121 5805 6 1560 296 143 0 0 chr4 127825977 127826026 -27804094 + L1M5 LINE L1 5720 5768 -396 6 1560 21 0 0 0 chr4 127826042 127826063 -27804057 + AT_rich Low_complexity Low_complexity 1 21 0 6 1560 1904 143 3 22 chr4 127826063 127826378 -27803742 - Lx4A LINE L1 0 7058 6750 6 1560 535 284 72 52 chr4 127826437 127826730 -27803390 - L1ME1 LINE L1 -526 5653 5349 6 1560 204 265 29 0 chr4 127826825 127826893 -27803227 + (CAGAGA)n Simple_repeat Simple_repeat 4 73 0 6 1560 309 341 124 23 chr4 127826903 127827080 -27803040 - L1ME1 LINE L1 -1058 5088 4894 6 1560 184 370 49 32 chr4 127827154 127827277 -27802843 - L2a LINE L2 -11 3415 3291 6 1560 529 270 56 51 chr4 127827288 127827503 -27802617 + L1MA7 LINE L1 5780 5995 -296 6 1560 328 338 69 43 chr4 127828563 127828782 -27801338 + MIR SINE MIR 8 236 -32 6 1560 182 175 125 0 chr4 127828864 127828904 -27801216 - MIRc SINE MIR -109 159 115 6 1560 255 313 76 34 chr4 127830408 127830527 -27799593 - MIR3 SINE MIR -84 124 1 6 1560 647 236 133 5 chr4 127831138 127831334 -27798786 + ID_B1 SINE B4 3 223 -1 6 1560 462 18 0 0 chr4 127831729 127831784 -27798336 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1560 279 71 0 0 chr4 127832938 127832980 -27797140 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1560 660 268 46 68 chr4 127833043 127833323 -27796797 - B4A SINE B4 -16 276 3 6 1560 225 245 0 0 chr4 127834543 127834596 -27795524 - MIRb SINE MIR -8 260 208 6 1560 403 282 0 0 chr4 127835097 127835200 -27794920 - MIR SINE MIR -137 125 23 6 1560 287 356 29 58 chr4 127835965 127836171 -27793949 + MIRb SINE MIR 67 266 -2 6 1560 302 156 21 43 chr4 127837175 127837269 -27792851 + CT-rich Low_complexity Low_complexity 2 93 0 6 1560 279 54 0 0 chr4 127838084 127838121 -27791999 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1560 203 330 111 19 chr4 127839129 127839237 -27790883 + MIR SINE MIR 97 214 -48 6 1560 799 294 131 15 chr4 127840044 127840379 -27789741 + MTEa LTR MaLR 1 374 -5 6 1560 658 274 46 25 chr4 127840787 127841027 -27789093 - MLT1D LTR MaLR -7 498 254 6 1560 1158 22 0 0 chr4 127841575 127841712 -27788408 + (CA)n Simple_repeat Simple_repeat 1 137 0 6 1560 1128 84 0 0 chr4 127842155 127842334 -27787786 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1560 276 333 95 7 chr4 127842724 127842872 -27787248 - MIRb SINE MIR -1 267 107 6 1560 1263 94 0 0 chr4 127844610 127844790 -27785330 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1560 202 143 0 28 chr4 127844790 127844826 -27785294 + CT-rich Low_complexity Low_complexity 2 36 0 6 1560 1054 85 6 28 chr4 127844826 127845007 -27785113 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 6 1560 1114 269 78 7 chr4 127845112 127845419 -27784701 - MTEb LTR MaLR -17 362 34 6 1560 549 0 0 0 chr4 127845624 127845685 -27784435 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1560 687 12 0 0 chr4 127846185 127846265 -27783855 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1560 523 290 89 78 chr4 127846315 127846596 -27783524 - B4A SINE B4 -8 284 1 6 1560 483 275 41 21 chr4 127846634 127846779 -27783341 + ID_B1 SINE B4 77 224 0 6 1560 500 313 180 31 chr4 127847027 127847598 -27782522 - Tigger12 DNA MER2_type -1226 733 78 6 1560 297 370 58 41 chr4 127848075 127848247 -27781873 + MER45A DNA Tip100 4 178 0 6 1560 396 0 0 0 chr4 127849289 127849333 -27780787 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1560 237 128 0 0 chr4 127849386 127849433 -27780687 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1560 327 25 0 0 chr4 127849493 127849533 -27780587 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1560 207 0 0 0 chr4 127849585 127849608 -27780512 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1560 344 267 35 0 chr4 127849625 127849711 -27780409 - B4 SINE B4 -18 274 186 6 1560 252 298 171 24 chr4 127849774 127849953 -27780167 - MIR SINE MIR -55 213 17 6 1560 333 0 0 0 chr4 127850089 127850126 -27779994 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1560 682 295 17 65 chr4 127850130 127850340 -27779780 + L1ME1 LINE L1 5614 5827 -352 7 1560 850 121 71 0 chr4 127850340 127850480 -27779640 + B1_Mur4 SINE Alu 1 150 0 7 1560 682 295 17 65 chr4 127850480 127850495 -27779625 + L1ME1 LINE L1 5828 5831 -348 7 1560 542 41 14 0 chr4 127850495 127850568 -27779552 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 7 1560 682 295 17 65 chr4 127850568 127850631 -27779489 + L1ME1 LINE L1 5832 5888 -291 7 1560 216 89 0 67 chr4 127850664 127850724 -27779396 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 7 1560 345 200 0 204 chr4 127850740 127850872 -27779248 - ORR1C2 LTR MaLR -279 105 1 7 1560 1718 165 34 93 chr4 127850885 127851262 -27778858 - ORR1C2 LTR MaLR 0 384 30 7 1560 1094 68 7 0 chr4 127851262 127851408 -27778712 - B1_Mus1 SINE Alu -1 147 1 7 1560 1718 165 34 93 chr4 127851408 127851438 -27778682 - ORR1C2 LTR MaLR -355 29 1 7 1560 477 333 93 5 chr4 127851742 127851947 -27778173 + B4 SINE B4 1 223 -69 7 1560 190 278 194 10 chr4 127853006 127853104 -27777016 - MIRb SINE MIR -138 130 15 7 1560 230 319 0 14 chr4 127854832 127854905 -27775215 - MER81 DNA AcHobo -38 76 5 7 1560 269 325 13 25 chr4 127855399 127855489 -27774631 - MLT1E LTR MaLR -81 599 469 7 1560 593 267 182 29 chr4 127855526 127855808 -27774312 - MLT1E LTR MaLR -358 322 1 7 1560 538 27 26 13 chr4 127855846 127855922 -27774198 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 7 1560 773 205 48 23 chr4 127855927 127856154 -27773966 - Lx4B LINE L1 -17 7041 6719 7 1560 379 256 109 0 chr4 127856163 127856282 -27773838 - MIR SINE MIR -68 200 60 7 1560 697 227 256 23 chr4 127857352 127857688 -27772432 - MTD LTR MaLR 0 421 12 7 1560 748 195 62 28 chr4 127857962 127858141 -27771979 + B2_Mm2 SINE B2 2 186 -9 7 1560 206 346 13 0 chr4 127858354 127858432 -27771688 + MIRc SINE MIR 70 148 -120 7 1560 441 316 65 71 chr4 127859263 127859599 -27770521 + ORR1E LTR MaLR 1 350 -9 7 1560 586 221 11 99 chr4 127859833 127860014 -27770106 - B4A SINE B4 -123 169 5 7 1560 292 301 105 37 chr4 127860047 127860209 -27769911 - MIRb SINE MIR -75 193 21 7 1560 281 334 114 59 chr4 127860711 127861150 -27768970 - L1MB3 LINE L1 -2 6181 5719 7 1560 444 117 0 0 chr4 127861822 127861899 -27768221 + (GA)n Simple_repeat Simple_repeat 1 77 0 7 1560 334 338 26 20 chr4 127862689 127862840 -27767280 - MIRb SINE MIR -15 253 102 7 1560 603 27 0 0 chr4 127863393 127863466 -27766654 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1560 350 314 10 10 chr4 127863515 127863618 -27766502 - Lx8 LINE L1 -154 7319 7217 7 1560 1232 84 0 11 chr4 127865103 127865283 -27764837 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 7 1560 628 45 23 0 chr4 127865283 127865371 -27764749 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 7 1560 357 336 54 20 chr4 127865513 127865662 -27764458 - MER53 DNA hAT -1 192 39 7 1560 676 251 299 0 chr4 127866113 127866404 -27763716 + MTEa LTR MaLR 1 378 -1 7 1560 281 172 17 33 chr4 127866448 127866508 -27763612 + ID4_ SINE ID 16 74 -9 7 1560 1401 59 15 6 chr4 127866881 127867221 -27762899 + (TAGA)n Simple_repeat Simple_repeat 1 342 0 7 1560 236 224 92 46 chr4 127867223 127867264 -27762856 - MT2A LTR ERVL -39 516 476 7 1560 1226 40 17 6 chr4 127867264 127867442 -27762678 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 1560 2030 209 56 36 chr4 127867442 127867898 -27762222 - MT2A LTR ERVL -80 475 2 7 1560 287 321 9 75 chr4 127869271 127869483 -27760637 - YREP_Mm Unknown Unknown -1429 383 186 7 1560 624 246 0 15 chr4 127869351 127869487 -27760633 + ID_B1 SINE B4 86 219 -5 7 1560 1227 68 0 0 chr4 127869491 127869653 -27760467 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 7 1560 21 0 0 0 chr4 127870320 127870341 -27759779 + AT_rich Low_complexity Low_complexity 1 21 0 7 1560 405 0 0 0 chr4 127870468 127870513 -27759607 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1560 439 232 26 35 chr4 127870695 127870811 -27759309 + MIRc SINE MIR 39 153 -115 7 1560 300 192 143 23 chr4 127870927 127871046 -27759074 + MLT1C LTR MaLR 1 132 -258 7 1560 292 279 92 109 chr4 127871099 127871328 -27758792 + MLT1C LTR MaLR 230 454 -13 7 1560 213 299 83 18 chr4 127872808 127872917 -27757203 - MIRb SINE MIR -130 138 23 7 1560 205 347 128 8 chr4 127873166 127873291 -27756829 + L2b LINE L2 3033 3172 -203 7 1560 300 324 72 72 chr4 127875078 127875232 -27754888 - L1MCc LINE L1 -4936 1487 1329 7 1560 929 93 49 21 chr4 127875232 127875375 -27754745 - B1_Mus1 SINE Alu 0 148 2 7 1560 300 324 72 72 chr4 127875375 127875443 -27754677 - L1MCc LINE L1 -5095 1328 1265 7 1560 1755 112 7 66 chr4 127875471 127875776 -27754344 + ORR1A4 LTR MaLR 1 287 -42 7 1560 1155 33 0 7 chr4 127875776 127875962 -27754158 + L1Md_F3 LINE L1 6419 6584 0 7 1560 1105 69 7 0 chr4 127875974 127876119 -27754001 + B1_Mm SINE Alu 2 147 0 7 1560 327 132 0 0 chr4 127876119 127876187 -27753933 + (A)n Simple_repeat Simple_repeat 1 68 0 7 1560 390 91 0 0 chr4 127876187 127876242 -27753878 + ORR1A4 LTR MaLR 272 326 0 7 1560 1180 247 50 50 chr4 127876246 127876625 -27753495 - MTEb LTR MaLR 0 379 1 7 1560 1450 193 119 45 chr4 127876737 127877116 -27753004 - MTD LTR MaLR 0 419 13 7 1560 1277 158 247 47 chr4 127877355 127877739 -27752381 - RMER6B LTR ERVK 0 461 1 7 1560 235 293 35 35 chr4 127877959 127878044 -27752076 - MER117 DNA MER1_type 0 197 113 7 1560 206 351 70 65 chr4 127881663 127881849 -27748271 - MIRb SINE MIR -64 204 18 7 1560 289 259 140 7 chr4 127882050 127882186 -27747934 + MIRb SINE MIR 1 154 -114 7 1560 608 271 5 7 chr4 127882186 127882348 -27747772 - MTE2a LTR MaLR 0 379 211 7 1560 962 236 21 50 chr4 127882384 127882665 -27747455 - MTE2a LTR MaLR -106 273 1 7 1560 1955 143 84 11 chr4 127882799 127883166 -27746954 - ORR1B1 LTR MaLR 0 394 1 7 1560 238 296 128 47 chr4 127883277 127883426 -27746694 - ORR1E LTR MaLR -111 248 88 7 1560 187 29 56 28 chr4 127883743 127883779 -27746341 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 7 1560 378 0 0 0 chr4 127884089 127884131 -27745989 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1560 387 0 0 0 chr4 127884192 127884235 -27745885 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1560 342 0 0 0 chr4 127884305 127884343 -27745777 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1560 253 176 71 29 chr4 127885080 127885150 -27744970 + MIRb SINE MIR 64 136 -132 7 1560 209 289 252 9 chr4 127885165 127885280 -27744840 - MIRm SINE MIR -8 268 126 7 1560 831 145 0 0 chr4 127885329 127885561 -27744559 + (TG)n Simple_repeat Simple_repeat 1 232 0 7 1560 320 379 0 0 chr4 127886051 127886212 -27743908 + C-rich Low_complexity Low_complexity 1 161 0 7 1560 189 303 133 22 chr4 127886623 127886758 -27743362 + L2b LINE L2 2990 3139 -236 7 1560 746 148 29 36 chr4 127888210 127888350 -27741770 + B1_Mus1 SINE Alu 1 139 -9 7 1560 600 84 0 0 chr4 127888353 127888436 -27741684 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 7 1560 318 315 14 14 chr4 127888899 127889044 -27741076 - MIR SINE MIR -37 225 81 7 1560 1203 58 0 0 chr4 127889629 127889785 -27740335 + (GAAAA)n Simple_repeat Simple_repeat 1 156 0 7 1560 205 240 0 0 chr4 127890364 127890414 -27739706 + C-rich Low_complexity Low_complexity 1 50 0 7 1560 184 364 34 0 chr4 127891150 127891238 -27738882 + MIRb SINE MIR 85 175 -93 7 1560 206 275 100 0 chr4 127891717 127891797 -27738323 - L2a LINE L2 0 3426 3339 7 1560 637 261 93 19 chr4 127891976 127892191 -27737929 - MLT1K LTR MaLR -33 562 332 7 1560 2944 285 87 28 chr4 127892255 127893350 -27736770 - Lx8 LINE L1 -2 7471 6313 7 1560 553 308 33 19 chr4 127893976 127894191 -27735929 + ID_B1 SINE B4 2 219 -5 7 1560 637 34 23 0 chr4 127895938 127896026 -27734094 + (TC)n Simple_repeat Simple_repeat 2 91 0 7 1560 696 239 0 0 chr4 127896250 127896392 -27733728 - B1_Mur1 SINE Alu -7 142 1 7 1560 216 347 32 16 chr4 127896774 127896900 -27733220 + L2 LINE L2 2274 2401 -1018 7 1560 2215 158 35 10 chr4 127896984 127897381 -27732739 + MTB_Mm LTR MaLR 1 407 0 7 1560 232 386 47 26 chr4 127897584 127897818 -27732302 + L2 LINE L2 2724 2962 -457 7 1560 838 259 0 0 chr4 127897846 127898016 -27732104 + B3 SINE B2 41 210 -6 7 1560 846 135 0 0 chr4 127898425 127898603 -27731517 + (TCC)n Simple_repeat Simple_repeat 3 180 0 7 1560 613 161 0 11 chr4 127898635 127898662 -27731458 + polypyrimidine Low_complexity Low_complexity 154 180 0 7 1560 906 122 0 0 chr4 127898662 127898842 -27731278 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1560 613 161 0 11 chr4 127898842 127898911 -27731209 + polypyrimidine Low_complexity Low_complexity 85 153 0 7 1560 888 124 0 0 chr4 127898911 127899089 -27731031 + (TCC)n Simple_repeat Simple_repeat 3 180 0 7 1560 613 161 0 11 chr4 127899089 127899112 -27731008 + polypyrimidine Low_complexity Low_complexity 62 84 0 7 1560 927 117 0 0 chr4 127899112 127899292 -27730828 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1560 613 161 0 11 chr4 127899292 127899352 -27730768 + polypyrimidine Low_complexity Low_complexity 2 61 0 7 1560 2214 144 61 18 chr4 127899726 127900121 -27729999 + MTC LTR MaLR 10 421 0 7 1560 252 86 0 0 chr4 127900387 127900422 -27729698 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 1560 382 272 249 0 chr4 127900444 127900657 -27729463 - L1MB4 LINE L1 0 6180 5915 7 1560 312 48 0 0 chr4 127901179 127901221 -27728899 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 7 1560 601 181 0 9 chr4 127901223 127901329 -27728791 - PB1D9 SINE Alu -13 107 3 7 1560 234 91 0 0 chr4 127901386 127901419 -27728701 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1560 210 260 0 57 chr4 127905901 127905954 -27724166 + MIRc SINE MIR 85 134 -134 7 1560 836 290 19 37 chr4 127906004 127906273 -27723847 + B4A SINE B4 1 264 -28 7 1560 345 24 0 0 chr4 127906392 127906434 -27723686 + (CAA)n Simple_repeat Simple_repeat 2 43 0 7 1560 317 286 0 0 chr4 127906447 127906524 -27723596 + ID2 SINE ID 3 79 -4 7 1560 198 266 97 25 chr4 127906581 127906672 -27723448 + MIR3 SINE MIR 79 169 -39 7 1560 798 270 167 6 chr4 127906693 127907010 -27723110 - ORR1D2 LTR MaLR 0 370 3 8 1560 494 321 12 31 chr4 127907828 127908085 -27722035 + L2a LINE L2 2925 3176 -250 8 1560 196 200 164 0 chr4 127908175 127908230 -27721890 - MIR3 SINE MIR -46 162 99 8 1560 297 0 0 0 chr4 127909299 127909332 -27720788 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1560 432 0 0 0 chr4 127909332 127909379 -27720741 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1560 304 149 59 15 chr4 127909783 127909851 -27720269 - LTR16C LTR ERVL -1 488 418 8 1560 383 354 82 13 chr4 127909938 127910170 -27719950 - LTR16C LTR ERVL -181 308 61 8 1560 448 320 43 16 chr4 127912104 127912319 -27717801 - L1M5 LINE L1 -469 5655 5436 8 1560 231 293 77 8 chr4 127912319 127912436 -27717684 + PB1 SINE Alu 1 125 -2 8 1560 254 321 53 63 chr4 127912436 127912615 -27717505 - L1M5 LINE L1 -738 5435 5262 8 1560 246 203 50 17 chr4 127912913 127912973 -27717147 - B4A SINE B4 -227 65 4 8 1560 1113 58 0 0 chr4 127913275 127913413 -27716707 - B1_Mus2 SINE Alu -9 138 1 8 1560 479 291 22 92 chr4 127913426 127913781 -27716339 - L1M5 LINE L1 -1668 4478 4147 8 1560 354 98 0 0 chr4 127913785 127913836 -27716284 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1560 758 255 63 11 chr4 127913957 127914147 -27715973 - B3 SINE B2 -14 202 3 8 1560 407 173 13 13 chr4 127914154 127914230 -27715890 - B4A SINE B4 -74 218 143 8 1560 306 0 0 0 chr4 127914493 127914527 -27715593 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1560 441 0 0 0 chr4 127914788 127914837 -27715283 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1560 369 0 0 0 chr4 127914837 127914877 -27715243 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1560 200 333 108 62 chr4 127915057 127915125 -27714995 + MIRb SINE MIR 23 102 -166 8 1560 868 299 10 30 chr4 127915125 127915422 -27714698 - B4 SINE B4 -1 291 1 8 1560 200 333 108 62 chr4 127915422 127915548 -27714572 + MIRb SINE MIR 103 226 -42 8 1560 336 317 19 62 chr4 127915885 127916133 -27713987 + HAL1-2a_MD LINE L1 2346 2529 -495 8 1560 3241 77 58 0 chr4 127916665 127917131 -27712989 - Lx LINE L1 -2 6652 6160 8 1560 753 176 17 0 chr4 127917653 127917829 -27712291 + GA-rich Low_complexity Low_complexity 2 180 0 8 1560 292 248 9 19 chr4 127917847 127917954 -27712166 + GA-rich Low_complexity Low_complexity 4 109 0 8 1560 203 326 69 8 chr4 127919022 127919152 -27710968 - L2 LINE L2 -540 2879 2742 8 1560 774 203 80 27 chr4 127919626 127919750 -27710370 + B4 SINE B4 90 217 -75 8 1560 495 0 0 0 chr4 127919750 127919805 -27710315 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1560 774 203 80 27 chr4 127919805 127919867 -27710253 + B4 SINE B4 218 286 -6 8 1560 237 290 0 0 chr4 127919875 127919937 -27710183 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1560 364 325 128 33 chr4 127920844 127921118 -27709002 + L1ME4a LINE L1 5807 6106 -18 8 1560 314 205 57 14 chr4 127921155 127921236 -27708884 - ID4_ SINE ID -67 85 1 8 1560 1032 95 0 0 chr4 127921335 127921503 -27708617 + (CA)n Simple_repeat Simple_repeat 2 169 0 8 1560 567 0 0 0 chr4 127922543 127922606 -27707514 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1560 368 289 64 76 chr4 127922794 127923062 -27707058 + B4 SINE B4 42 281 -11 8 1560 397 302 79 7 chr4 127923353 127923493 -27706627 + MIR SINE MIR 69 218 -44 8 1561 476 319 102 53 chr4 127926552 127926777 -27703343 + MIR SINE MIR 13 248 -20 8 1561 228 373 48 26 chr4 127926785 127927016 -27703104 - MIRb SINE MIR -31 237 2 8 1561 2631 163 122 26 chr4 127927401 127927942 -27702178 + Lx5 LINE L1 6454 7046 -4 8 1561 240 281 169 27 chr4 127928035 127928218 -27701902 + MER90 LTR ERV1 253 461 -114 8 1561 906 232 19 19 chr4 127929137 127929348 -27700772 + B4A SINE B4 2 212 -80 8 1561 315 258 54 0 chr4 127929838 127929931 -27700189 + B4A SINE B4 195 292 0 8 1561 476 245 6 0 chr4 127929932 127930091 -27700029 + (CA)n Simple_repeat Simple_repeat 2 161 0 8 1561 202 292 0 0 chr4 127930115 127930163 -27699957 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1561 546 234 43 28 chr4 127930641 127930782 -27699338 + RSINE1 SINE B4 2 144 -21 8 1561 375 23 0 0 chr4 127930819 127930863 -27699257 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 8 1561 939 273 149 19 chr4 127930959 127931434 -27698686 - MLT1F2 LTR MaLR 0 653 1 8 1561 577 306 194 19 chr4 127931434 127931867 -27698253 - MLT1F2-int LTR MaLR 0 1489 981 8 1561 485 208 83 28 chr4 127931912 127932021 -27698099 + PB1D10 SINE Alu 3 117 0 8 1561 280 302 8 65 chr4 127932057 127932134 -27697986 - MLT1F2-int LTR MaLR -572 917 843 8 1561 204 40 0 0 chr4 127932134 127932159 -27697961 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1561 280 302 8 65 chr4 127932159 127932205 -27697915 - MLT1F2-int LTR MaLR -647 842 801 8 1561 295 275 49 24 chr4 127932401 127932524 -27697596 - MLT1F2-int LTR MaLR -690 799 674 8 1561 302 331 79 52 chr4 127932717 127933007 -27697113 - MLT1F2-int LTR MaLR -1191 298 1 8 1561 296 299 118 33 chr4 127933007 127933314 -27696806 - MLT1F2 LTR MaLR -22 632 338 8 1561 346 257 88 10 chr4 127933421 127933523 -27696597 + B4 SINE B4 42 151 -141 8 1561 318 215 0 0 chr4 127933547 127933626 -27696494 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1561 239 336 49 25 chr4 127933716 127933838 -27696282 - MLT1F2 LTR MaLR -412 148 24 8 1561 279 0 0 0 chr4 127934207 127934238 -27695882 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 8 1561 250 286 113 26 chr4 127934524 127934639 -27695481 - LTR79 LTR ERVL 0 527 403 8 1561 406 278 108 27 chr4 127935219 127935367 -27694753 + RSINE1 SINE B4 3 162 -3 8 1561 305 371 10 54 chr4 127936232 127936437 -27693683 - MLT1E1 LTR MaLR -108 546 351 8 1561 194 358 30 0 chr4 127936701 127936768 -27693352 - L2 LINE L2 -1890 1529 1461 8 1561 648 0 0 0 chr4 127937283 127937355 -27692765 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 1561 423 160 0 0 chr4 127939224 127939299 -27690821 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1561 249 83 0 0 chr4 127939486 127939522 -27690598 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1561 1365 58 5 0 chr4 127939594 127939783 -27690337 - MTB LTR MaLR 0 400 211 8 1561 313 355 64 48 chr4 127939916 127940227 -27689893 + LTR33 LTR ERVL 153 468 -47 8 1561 441 306 26 33 chr4 127940425 127940577 -27689543 - MER58B DNA MER1_type -19 322 172 8 1561 201 323 0 0 chr4 127941011 127941073 -27689047 + MIRb SINE MIR 17 78 -190 8 1561 400 264 0 0 chr4 127941136 127941223 -27688897 + B4 SINE B4 1 87 -205 8 1561 1127 92 0 0 chr4 127941232 127941395 -27688725 + B2_Mm2 SINE B2 2 164 -31 8 1561 365 0 22 0 chr4 127941399 127941444 -27688676 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 8 1561 442 266 37 49 chr4 127941478 127941640 -27688480 + B4 SINE B4 119 278 -14 8 1561 414 114 0 0 chr4 127941644 127941714 -27688406 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1561 193 308 0 0 chr4 127945418 127945470 -27684650 - MIRb SINE MIR -181 87 36 8 1561 198 0 0 0 chr4 127947093 127947115 -27683005 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 8 1561 1346 198 183 14 chr4 127947248 127947597 -27682523 - MTD LTR MaLR -8 411 4 8 1561 1039 263 61 0 chr4 127947806 127948068 -27682052 + B4 SINE B4 15 292 0 8 1561 603 211 0 0 chr4 127948069 127948240 -27681880 + (CA)n Simple_repeat Simple_repeat 2 172 0 8 1561 671 351 13 13 chr4 127948359 127948593 -27681527 + Tigger13a DNA MER2_type 138 371 -400 8 1561 204 97 0 0 chr4 127950268 127950299 -27679821 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1561 254 248 9 0 chr4 127950797 127950906 -27679214 + (TG)n Simple_repeat Simple_repeat 1 110 0 8 1561 642 178 18 0 chr4 127950932 127951095 -27679025 + (TG)n Simple_repeat Simple_repeat 1 166 0 8 1561 405 254 15 6 chr4 127951115 127951455 -27678665 + (TG)n Simple_repeat Simple_repeat 1 343 0 8 1561 349 304 64 34 chr4 127951508 127951712 -27678408 - L2a LINE L2 -270 3156 2947 8 1561 233 83 0 0 chr4 127951898 127951946 -27678174 + Lx3C LINE L1 6900 6947 -29 8 1561 189 0 0 0 chr4 127952315 127952336 -27677784 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1561 420 236 0 52 chr4 127952345 127952461 -27677659 - PB1D7 SINE Alu 0 120 11 8 1561 230 333 0 29 chr4 127952373 127952475 -27677645 - ID_B1 SINE B4 -48 176 78 8 1561 277 370 0 0 chr4 127953542 127953634 -27676486 - MIRb SINE MIR -90 178 87 8 1561 414 0 0 0 chr4 127954023 127954069 -27676051 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1561 208 277 15 15 chr4 127955056 127955122 -27674998 + L3 LINE CR1 4229 4294 -195 8 1561 184 243 0 0 chr4 127955757 127955794 -27674326 - L2b LINE L2 -22 3353 3317 8 1561 202 222 18 36 chr4 127956035 127956091 -27674029 + (TATG)n Simple_repeat Simple_repeat 2 56 0 8 1561 301 266 0 0 chr4 127956586 127956665 -27673455 + (ATGGTG)n Simple_repeat Simple_repeat 5 83 0 8 1561 628 309 44 71 chr4 127956665 127956961 -27673159 + B4A SINE B4 1 288 -4 8 1561 456 99 0 0 chr4 127956980 127957051 -27673069 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1561 265 350 10 10 chr4 127957650 127957754 -27672366 + Cheshire DNA MER1_type 24 127 -2293 8 1561 629 259 115 24 chr4 127957754 127958007 -27672113 + B4A SINE B4 1 276 -16 8 1561 216 0 0 0 chr4 127958010 127958034 -27672086 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1561 455 227 8 25 chr4 127958381 127958503 -27671617 - ORR1E LTR MaLR -233 126 7 8 1561 568 209 18 8 chr4 127959049 127959180 -27670940 - MTE2b LTR MaLR -13 366 202 8 1561 972 70 0 0 chr4 127959180 127959309 -27670811 + (GA)n Simple_repeat Simple_repeat 1 129 0 8 1561 356 282 48 0 chr4 127959309 127959390 -27670730 - MTE2b LTR MaLR -178 201 117 8 1561 901 282 42 49 chr4 127959602 127959889 -27670231 + B4A SINE B4 8 292 0 8 1561 327 232 0 0 chr4 127959889 127959971 -27670149 + (CA)n Simple_repeat Simple_repeat 1 82 0 8 1561 305 351 0 56 chr4 127960672 127960814 -27669306 + RMER30 DNA MER1_type 68 201 -1 8 1561 243 0 0 0 chr4 127961625 127961652 -27668468 + (CAG)n Simple_repeat Simple_repeat 1 27 0 8 1561 466 291 107 79 chr4 127961678 127961958 -27668162 - B4A SINE B4 -4 288 1 8 1561 263 254 290 69 chr4 127962613 127962817 -27667303 - MTEa LTR MaLR -31 348 100 8 1561 315 231 29 95 chr4 127962904 127963009 -27667111 - MTEa LTR MaLR -281 98 1 8 1561 357 204 102 0 chr4 127963019 127963127 -27666993 - ERVL-int LTR ERVL -3 5754 5636 8 1561 387 0 0 0 chr4 127963127 127963170 -27666950 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 8 1561 292 281 29 15 chr4 127963263 127963400 -27666720 - MTE-int LTR MaLR -1390 190 52 8 1561 284 275 95 124 chr4 127963454 127963728 -27666392 - ORR1E LTR MaLR -35 324 59 8 1561 2255 165 5 48 chr4 127964230 127964619 -27665501 - MTD LTR MaLR 0 419 49 8 1561 2288 83 3 60 chr4 127964619 127964966 -27665154 - ORR1A2 LTR MaLR 0 327 1 8 1561 2255 165 5 48 chr4 127964966 127965014 -27665106 - MTD LTR MaLR -371 48 1 8 1561 284 356 108 30 chr4 127966060 127966152 -27663968 - L2a LINE L2 -42 3384 3287 8 1561 751 190 35 0 chr4 127966152 127966294 -27663826 + B1_Mur1 SINE Alu 1 147 -2 9 1561 354 363 109 28 chr4 127966294 127966794 -27663326 - L2a LINE L2 -140 3286 2738 8 1561 303 257 123 92 chr4 127967758 127967921 -27662199 - ORR1E LTR MaLR -6 353 171 9 1561 496 275 46 62 chr4 127968356 127968550 -27661570 - RMER30 DNA MER1_type -7 195 5 9 1561 200 322 0 0 chr4 127969454 127969513 -27660607 + CT-rich Low_complexity Low_complexity 3 61 0 9 1561 204 143 0 0 chr4 127971910 127971952 -27658168 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 9 1561 591 221 56 14 chr4 127971952 127972094 -27658026 - B1_Mur3 SINE Alu -1 148 1 9 1561 242 336 53 35 chr4 127974674 127974788 -27655332 - MIRm SINE MIR -3 273 158 9 1561 199 246 16 66 chr4 127975758 127975819 -27654301 + L2a LINE L2 3363 3420 -6 9 1561 354 147 0 0 chr4 127976942 127977010 -27653110 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1561 353 324 40 47 chr4 127977434 127977583 -27652537 - B1F2 SINE Alu -1 148 1 9 1561 451 336 0 0 chr4 127977450 127977584 -27652536 - ID_B1 SINE B4 -10 214 81 9 1561 495 0 0 0 chr4 127977698 127977753 -27652367 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 1561 350 178 11 0 chr4 127977753 127977843 -27652277 + (TG)n Simple_repeat Simple_repeat 1 91 0 9 1561 482 212 6 0 chr4 127977863 127978023 -27652097 + (TG)n Simple_repeat Simple_repeat 2 162 0 9 1561 229 379 48 8 chr4 127978095 127978220 -27651900 + MIR SINE MIR 20 149 -59 9 1561 209 306 24 0 chr4 127978349 127978434 -27651686 + CT-rich Low_complexity Low_complexity 3 89 0 9 1561 231 297 161 15 chr4 127978579 127978709 -27651411 - MIRb SINE MIR -93 175 23 9 1561 232 402 48 41 chr4 127979814 127980208 -27649912 - L2 LINE L2 -2085 1334 938 9 1561 845 263 23 90 chr4 127981309 127981610 -27648510 + B4A SINE B4 9 289 -3 9 1561 1042 224 77 37 chr4 127982007 127982280 -27647840 + B4A SINE B4 1 284 -8 9 1561 1180 55 0 0 chr4 127984150 127984296 -27645824 + B1_Mus2 SINE Alu 2 147 0 9 1561 203 61 30 0 chr4 127984353 127984386 -27645734 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1561 979 124 0 30 chr4 127984387 127984553 -27645567 - B2_Mm2 SINE B2 -34 161 1 9 1561 217 182 45 15 chr4 127984681 127984748 -27645372 + (TTTG)n Simple_repeat Simple_repeat 3 71 0 9 1561 236 344 46 67 chr4 127984829 127985218 -27644902 - L1MEg LINE L1 -1602 4544 4164 9 1561 267 327 66 24 chr4 127985583 127985749 -27644371 - L1M3 LINE L1 -2454 3686 3514 9 1561 521 285 136 39 chr4 127985890 127986239 -27643881 - L1MEg LINE L1 -2856 3290 2917 9 1561 662 246 96 35 chr4 127986251 127986300 -27643820 - B3 SINE B2 0 216 167 9 1561 252 0 0 0 chr4 127986300 127986328 -27643792 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1561 252 0 0 0 chr4 127986328 127986355 -27643765 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1561 662 246 96 35 chr4 127986355 127986502 -27643618 - B3 SINE B2 -50 166 8 9 1561 285 278 0 0 chr4 127986520 127986592 -27643528 - ID2 SINE ID -9 74 3 9 1561 455 327 142 25 chr4 127986603 127987196 -27642924 - L1MEg LINE L1 -3220 2926 2265 9 1561 342 317 42 24 chr4 127987772 127987937 -27642183 - L1MEg LINE L1 -4896 1346 1179 9 1561 395 273 47 40 chr4 127988789 127988938 -27641182 - MLT1A LTR MaLR -5 369 220 9 1561 234 217 0 0 chr4 127989003 127989072 -27641048 + CT-rich Low_complexity Low_complexity 3 71 0 9 1561 306 298 46 47 chr4 127990531 127990695 -27639425 - MIR SINE MIR -99 169 10 9 1561 205 321 22 56 chr4 127990983 127991072 -27639048 + L2a LINE L2 3341 3426 0 9 1561 608 288 107 44 chr4 127991125 127991397 -27638723 + B4 SINE B4 4 292 0 9 1561 498 33 0 0 chr4 127991505 127991565 -27638555 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1561 294 257 105 9 chr4 127994509 127994623 -27635497 + MIR SINE MIR 23 147 -61 9 1561 405 342 71 0 chr4 127994806 127994961 -27635159 + MER58A DNA MER1_type 59 224 0 9 1561 613 228 149 5 chr4 127995261 127995487 -27634633 - ORR1E LTR MaLR -108 262 24 9 1561 634 177 152 73 chr4 127996105 127996282 -27633838 + B4 SINE B4 98 288 -4 9 1561 359 240 8 0 chr4 127996286 127996411 -27633709 + (CA)n Simple_repeat Simple_repeat 1 126 0 9 1561 442 243 11 0 chr4 127996470 127996647 -27633473 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1561 213 315 53 32 chr4 127997872 127997967 -27632153 + L2b LINE L2 3270 3366 -9 9 1561 394 293 122 45 chr4 128000429 128000661 -27629459 - MLT1B LTR MaLR -167 300 37 1 1561 553 61 50 0 chr4 128000939 128001038 -27629082 + (GA)n Simple_repeat Simple_repeat 1 104 0 2 1561 1115 46 0 39 chr4 128001044 128001226 -27628894 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 3 1561 464 275 42 35 chr4 128001229 128001372 -27628748 + B1F SINE Alu 2 145 -4 4 1561 547 265 155 0 chr4 128001382 128001563 -27628557 + B3 SINE B2 2 210 -6 5 1561 252 267 33 0 chr4 128001596 128001656 -27628464 + ID4_ SINE ID 8 69 -14 6 1561 225 0 0 0 chr4 128002096 128002121 -27627999 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 7 1561 189 259 65 76 chr4 128002392 128002484 -27627636 - L2b LINE L2 -21 3354 3264 8 1561 323 318 35 52 chr4 128002649 128002765 -27627355 - MIRb SINE MIR -149 119 6 9 1561 243 293 13 26 chr4 128002902 128002979 -27627141 - L2b LINE L2 -5 3370 3295 1 1561 491 363 75 31 chr4 128004268 128004618 -27625502 - MLT1A LTR MaLR -5 385 3 1 1561 301 167 29 57 chr4 128004925 128004995 -27625125 + L1MDa LINE L1 2447 2514 -4119 1 1561 703 292 41 28 chr4 128005871 128006080 -27624040 + B4 SINE B4 34 245 -47 1 1561 555 16 0 0 chr4 128006080 128006144 -27623976 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1561 822 281 62 0 chr4 128006985 128007245 -27622875 + B4A SINE B4 1 276 -16 1 1561 208 314 76 99 chr4 128008052 128008183 -27621937 - MIRb SINE MIR -27 235 108 1 1561 666 275 86 63 chr4 128008194 128008462 -27621658 + B4 SINE B4 2 275 -17 1 1561 1291 34 0 0 chr4 128008822 128008969 -27621151 - B1_Mus2 SINE Alu 0 147 1 1 1561 789 128 0 0 chr4 128010555 128010680 -27619440 + (TCC)n Simple_repeat Simple_repeat 2 126 0 1 1561 216 0 0 0 chr4 128011721 128011745 -27618375 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1561 431 238 94 50 chr4 128012723 128012904 -27617216 + MIR SINE MIR 33 221 -41 2 1561 442 294 43 58 chr4 128013140 128013328 -27616792 - MER96B DNA hAT 0 417 233 2 1561 883 278 45 60 chr4 128015204 128015518 -27614602 - ORR1E LTR MaLR -50 309 1 2 1561 192 205 26 0 chr4 128017977 128018016 -27612104 - L2c LINE L2 -67 3320 3281 2 1561 585 42 0 0 chr4 128018865 128018937 -27611183 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 1561 1743 53 0 22 chr4 128019241 128019472 -27610648 - L1Md_F2 LINE L1 0 6582 6357 2 1561 181 324 42 14 chr4 128020565 128020637 -27609483 - MIRc SINE MIR -192 76 3 2 1561 1252 52 0 17 chr4 128021693 128021868 -27608252 + (TCTCCC)n Simple_repeat Simple_repeat 6 177 0 2 1561 281 421 0 0 chr4 128022473 128022651 -27607469 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1561 441 0 0 0 chr4 128022951 128023000 -27607120 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1561 328 309 23 63 chr4 128023389 128023640 -27606480 - L1M5 LINE L1 -1351 4795 4554 3 1561 203 343 123 9 chr4 128025124 128025230 -27604890 - MER5B DNA MER1_type -59 119 2 3 1561 840 177 15 116 chr4 128028646 128028736 -27601384 - URR1A DNA MER1_type 0 226 151 3 1561 1144 74 0 0 chr4 128028736 128028871 -27601249 + B1_Mm SINE Alu 1 135 -12 3 1561 279 0 0 0 chr4 128028872 128028903 -27601217 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1561 840 177 15 116 chr4 128028903 128029008 -27601112 - URR1A DNA MER1_type -76 150 49 3 1561 2969 27 0 3 chr4 128029151 128029489 -27600631 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1561 6711 27 32 7 chr4 128029489 128030320 -27599800 - IAPEz-int LTR ERVK 0 6481 5630 3 1561 23882 37 30 13 chr4 128030306 128033320 -27596800 - IAPEz-int LTR ERVK -3405 3076 8 3 1561 2969 27 0 3 chr4 128033320 128033658 -27596462 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1561 824 223 133 0 chr4 128034740 128034928 -27595192 + ID_B1 SINE B4 5 217 -7 3 1561 263 200 14 0 chr4 128034941 128035011 -27595109 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1561 895 156 0 11 chr4 128035029 128035210 -27594910 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1561 330 364 80 8 chr4 128035338 128035576 -27594544 + L2 LINE L2 1256 1510 -1909 3 1561 892 242 20 15 chr4 128035720 128035917 -27594203 + B3A SINE B2 1 198 0 4 1561 562 259 112 19 chr4 128036003 128036208 -27593912 + ID_B1 SINE B4 1 224 0 4 1561 2621 149 50 51 chr4 128036570 128037095 -27593025 - RLTR11A LTR ERVK -2 526 3 4 1561 325 328 24 87 chr4 128037676 128037883 -27592237 + MIRb SINE MIR 46 239 -29 4 1561 888 138 0 0 chr4 128038083 128038372 -27591748 + (TG)n Simple_repeat Simple_repeat 1 289 0 4 1561 336 96 0 37 chr4 128038389 128038443 -27591677 - HAL1-3A_ME LINE L1 -831 2027 1976 4 1561 387 0 0 0 chr4 128038484 128038527 -27591593 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1561 210 241 56 0 chr4 128039671 128039725 -27590395 + B1F1 SINE Alu 14 70 -79 4 1561 454 241 190 0 chr4 128039760 128039876 -27590244 + ID_B1 SINE B4 78 215 -9 4 1561 335 227 39 26 chr4 128039810 128039887 -27590233 + B1F SINE Alu 72 149 0 4 1561 23 0 0 0 chr4 128039955 128039978 -27590142 + AT_rich Low_complexity Low_complexity 1 23 0 4 1561 250 356 108 33 chr4 128040102 128040343 -27589777 - LTR83 LTR ERVL -11 769 511 5 1561 380 371 54 51 chr4 128040360 128040752 -27589368 - LTR83 LTR ERVL -320 460 68 5 1561 603 84 0 0 chr4 128040778 128040873 -27589247 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 1561 308 306 28 17 chr4 128040888 128041064 -27589056 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1561 963 248 47 73 chr4 128041081 128041381 -27588739 - B4A SINE B4 0 292 1 5 1561 303 329 119 22 chr4 128041778 128042139 -27587981 - L1M6 LINE L1 -4256 2240 1845 5 1561 331 298 83 0 chr4 128042487 128042608 -27587512 - L2a LINE L2 0 3426 3296 5 1561 289 311 3 17 chr4 128042727 128042818 -27587302 + ID4_ SINE ID 5 93 -59 5 1561 721 276 66 59 chr4 128043278 128043541 -27586579 + MIR SINE MIR 3 260 -2 5 1561 681 101 0 0 chr4 128043838 128043937 -27586183 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 5 1561 350 282 107 99 chr4 128043937 128043956 -27586164 - B4 SINE B4 -46 246 162 5 1561 853 102 77 15 chr4 128043956 128044086 -27586034 - B1_Mus1 SINE Alu 0 148 11 6 1561 350 282 107 99 chr4 128044086 128044102 -27586018 - B4 SINE B4 -46 161 79 5 1561 288 318 0 0 chr4 128044124 128044234 -27585886 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 1561 925 250 54 29 chr4 128044237 128044517 -27585603 - B4 SINE B4 -5 287 1 6 1561 2105 169 46 9 chr4 128046808 128047278 -27582842 - RMER4A LTR ERVK 0 585 46 6 1561 323 202 9 0 chr4 128047737 128047851 -27582269 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 1561 393 22 0 0 chr4 128048361 128048407 -27581713 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1561 341 223 105 37 chr4 128048921 128049112 -27581008 + RMER17A2 LTR ERVK 233 436 -470 6 1561 214 330 60 9 chr4 128049360 128049476 -27580644 + MIRb SINE MIR 106 227 -41 6 1561 408 125 0 0 chr4 128050261 128050325 -27579795 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1561 182 306 264 0 chr4 128050629 128050701 -27579419 + MIRm SINE MIR 167 257 -19 6 1561 379 134 0 72 chr4 128050898 128051051 -27579069 + G-rich Low_complexity Low_complexity 1 142 0 7 1561 218 360 16 58 chr4 128051232 128051353 -27578767 + L2c LINE L2 3272 3387 0 7 1561 244 353 10 24 chr4 128051436 128051559 -27578561 + MIRb SINE MIR 61 188 -80 7 1561 359 292 31 10 chr4 128052932 128053029 -27577091 + B4A SINE B4 4 102 -190 7 1561 236 246 18 0 chr4 128053071 128053128 -27576992 - MIRm SINE MIR 0 276 219 7 1561 363 324 0 0 chr4 128053504 128053612 -27576508 + (TG)n Simple_repeat Simple_repeat 2 109 0 7 1561 451 240 291 24 chr4 128053720 128053929 -27576191 - B4 SINE B4 -27 265 1 7 1561 297 294 113 60 chr4 128053943 128054225 -27575895 - L1MC5 LINE L1 -542 7419 7123 7 1561 275 329 88 12 chr4 128054473 128054633 -27575487 - L1MC5 LINE L1 -1154 6807 6636 7 1561 572 89 33 0 chr4 128054889 128054979 -27575141 + (CACCAT)n Simple_repeat Simple_repeat 6 98 0 7 1561 324 0 0 0 chr4 128055176 128055212 -27574908 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1561 793 224 5 96 chr4 128055394 128055592 -27574528 - B3A SINE B2 -18 180 1 8 1561 367 298 33 8 chr4 128056477 128056599 -27573521 + MIRc SINE MIR 32 156 -112 8 1561 1056 215 43 19 chr4 128056735 128056944 -27573176 + B3 SINE B2 1 214 -2 8 195 1382 174 5 0 chr4 128057152 128057376 -27572744 + URR1B DNA MER1_type 1 225 0 8 1562 1147 272 83 64 chr4 128057770 128058131 -27571989 - MTEa LTR MaLR -10 369 2 8 1562 392 350 103 39 chr4 128058180 128058412 -27571708 - MLT1I LTR MaLR -150 261 15 8 1562 504 0 0 0 chr4 128061857 128061913 -27568207 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 1562 280 207 87 15 chr4 128062008 128062101 -27568019 - PB1 SINE Alu 0 127 10 8 1562 783 228 26 31 chr4 128063050 128063245 -27566875 + B4A SINE B4 7 200 -92 8 1562 397 144 88 0 chr4 128063256 128063416 -27566704 + (CCTAG)n Simple_repeat Simple_repeat 4 177 0 8 1562 356 104 0 105 chr4 128063374 128063546 -27566574 + (CAGC)n Simple_repeat Simple_repeat 4 157 0 9 1562 484 129 75 0 chr4 128063569 128063716 -27566404 + (CCTAG)n Simple_repeat Simple_repeat 5 162 0 9 1562 460 296 0 18 chr4 128063716 128063826 -27566294 + B4 SINE B4 162 269 -23 9 1562 207 0 0 0 chr4 128063826 128063849 -27566271 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1562 333 0 0 0 chr4 128063849 128063885 -27566235 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1562 385 293 128 52 chr4 128064058 128064354 -27565766 + L1M5 LINE L1 5127 5450 -2432 9 1562 667 314 31 5 chr4 128064600 128064795 -27565325 + B4A SINE B4 2 201 -91 9 1562 268 284 175 3 chr4 128064935 128065044 -27565076 + B3A SINE B2 48 185 -13 9 1562 216 111 0 0 chr4 128065044 128065080 -27565040 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1562 268 290 107 29 chr4 128065080 128065092 -27565028 + B3A SINE B2 186 197 -1 9 1562 357 24 0 0 chr4 128066468 128066510 -27563610 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1562 441 0 0 0 chr4 128066526 128066575 -27563545 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1562 267 295 132 18 chr4 128068632 128068746 -27561374 - MER5A1 DNA MER1_type -37 129 3 1 1562 310 303 71 41 chr4 128068931 128069104 -27561016 + MIR SINE MIR 3 176 -92 1 1562 1121 251 42 21 chr4 128070144 128070429 -27559691 - B4 SINE B4 0 292 2 1 1562 414 0 0 0 chr4 128070995 128071041 -27559079 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1562 239 360 0 33 chr4 128072422 128072514 -27557606 - MLT1J1 LTR MaLR -319 125 37 1 1562 378 0 0 0 chr4 128072678 128072720 -27557400 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1562 253 326 0 21 chr4 128073564 128073661 -27556459 + GA-rich Low_complexity Low_complexity 1 95 0 1 1562 1111 228 73 22 chr4 128073661 128073934 -27556186 + B4 SINE B4 2 288 -4 1 1562 213 308 132 0 chr4 128074097 128074188 -27555932 + MIRc SINE MIR 60 162 -106 1 1562 183 291 53 35 chr4 128075009 128075066 -27555054 - L2c LINE L2 -62 3325 3268 1 1562 251 323 66 66 chr4 128076494 128076630 -27553490 - L2c LINE L2 0 3387 3252 1 1562 525 224 278 14 chr4 128077992 128078217 -27551903 + B4A SINE B4 6 289 -3 1 1562 472 127 45 0 chr4 128078267 128078377 -27551743 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 1562 342 244 36 33 chr4 128078484 128078818 -27551302 + (TATATG)n Simple_repeat Simple_repeat 1 335 0 1 1562 280 368 12 12 chr4 128078706 128078871 -27551249 + (TG)n Simple_repeat Simple_repeat 1 165 0 1 1562 581 119 10 0 chr4 128079418 128079519 -27550601 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1562 324 0 0 0 chr4 128079658 128079694 -27550426 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1562 1099 136 0 6 chr4 128079741 128079911 -27550209 + URR1A DNA MER1_type 58 226 0 1 1562 445 270 23 58 chr4 128079761 128079934 -27550186 - CYRA11_Mm Unknown Y-chromosome -297 320 154 1 1562 819 255 21 158 chr4 128080938 128081273 -27548847 + B4 SINE B4 2 290 -2 1 1562 261 0 0 0 chr4 128082114 128082143 -27547977 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1562 207 0 0 0 chr4 128082143 128082165 -27547955 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1562 260 207 75 78 chr4 128082299 128082425 -27547695 - B1F1 SINE Alu -13 136 14 1 1562 344 267 157 8 chr4 128082458 128082579 -27547541 + B1F SINE Alu 1 139 -10 1 1562 323 330 142 9 chr4 128082598 128082824 -27547296 + L1M5 LINE L1 3127 3382 -2764 1 1562 719 307 6 0 chr4 128082874 128083050 -27547070 + B3A SINE B2 1 177 -21 1 1562 946 142 7 7 chr4 128083113 128083262 -27546858 + B1_Mur4 SINE Alu 2 150 0 1 1562 375 149 8 8 chr4 128083277 128083405 -27546715 + GA-rich Low_complexity Low_complexity 1 128 0 1 1562 23 0 0 0 chr4 128083542 128083565 -27546555 + AT_rich Low_complexity Low_complexity 1 23 0 1 1562 808 244 48 31 chr4 128083798 128084026 -27546094 + B4A SINE B4 2 233 -59 1 1562 518 134 194 10 chr4 128084076 128084174 -27545946 + PB1D10 SINE Alu 1 116 -1 1 1562 315 0 0 0 chr4 128084217 128084252 -27545868 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1562 283 256 23 0 chr4 128084253 128084339 -27545781 + L1MA7 LINE L1 6167 6254 -37 1 1562 339 353 109 41 chr4 128084998 128085520 -27544600 + L1M5 LINE L1 5286 5593 -647 1 1562 384 22 0 0 chr4 128085765 128085810 -27544310 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1562 312 27 0 0 chr4 128085864 128085901 -27544219 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1562 590 234 64 21 chr4 128086394 128086534 -27543586 + B1_Mur1 SINE Alu 1 146 -3 1 1562 239 204 61 0 chr4 128087197 128087246 -27542874 + B1F SINE Alu 1 52 -97 1 1562 3368 53 0 0 chr4 128087374 128087770 -27542350 - MTA_Mm LTR MaLR 0 396 1 1 1562 245 330 45 66 chr4 128087960 128088337 -27541783 - L1MC5 LINE L1 -289 7672 7304 1 1562 662 299 57 79 chr4 128088472 128088737 -27541383 + B4A SINE B4 9 267 -25 1 1562 603 78 0 0 chr4 128088741 128088831 -27541289 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1562 466 226 131 41 chr4 128090212 128090319 -27539801 + L1MB7 LINE L1 5754 5864 -320 1 1562 1133 167 49 40 chr4 128090319 128090543 -27539577 + URR1A DNA MER1_type 1 226 0 1 1562 466 240 156 38 chr4 128090543 128090732 -27539388 + L1MB7 LINE L1 5865 6097 -81 1 1562 275 422 19 7 chr4 128090870 128091025 -27539095 + MIRb SINE MIR 40 196 -72 1 1562 193 234 64 0 chr4 128091969 128092016 -27538104 + MIR SINE MIR 102 151 -57 1 1562 420 143 0 0 chr4 128092949 128093019 -27537101 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1562 469 265 62 119 chr4 128093032 128093225 -27536895 - B4A SINE B4 -3 289 108 1 1562 573 42 0 0 chr4 128093613 128093685 -27536435 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1562 319 321 102 0 chr4 128094478 128094615 -27535505 - L2a LINE L2 0 3426 3276 1 1562 1873 281 79 30 chr4 128095758 128096596 -27533524 - L1MB8 LINE L1 -46 6132 5254 1 1562 225 0 0 0 chr4 128096861 128096886 -27533234 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1562 213 39 0 0 chr4 128097788 128097814 -27532306 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 1 1562 235 220 24 114 chr4 128097937 128098060 -27532060 - L2a LINE L2 -222 3165 3054 1 1562 211 246 7 37 chr4 128099173 128099308 -27530812 + CT-rich Low_complexity Low_complexity 2 132 0 1 1562 339 137 20 0 chr4 128099473 128099524 -27530596 + RSINE1 SINE B4 46 97 -68 1 1562 249 264 14 0 chr4 128100003 128100075 -27530045 - L1M5 LINE L1 -413 5711 5639 1 1562 420 20 0 0 chr4 128100318 128100367 -27529753 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1562 622 321 46 46 chr4 128100377 128100661 -27529459 - B4A SINE B4 -8 284 1 1 1562 473 226 16 48 chr4 128100930 128101116 -27529004 + CT-rich Low_complexity Low_complexity 1 180 0 1 1562 198 344 33 0 chr4 128102800 128102861 -27527259 - L2c LINE L2 -39 3348 3286 1 1562 266 312 111 50 chr4 128102916 128103115 -27527005 - MLT1J LTR MaLR -65 447 237 1 1562 731 284 52 45 chr4 128103547 128103848 -27526272 + B4A SINE B4 1 292 0 1 1562 227 219 0 0 chr4 128105404 128105445 -27524675 + ID4 SINE ID 3 43 -40 1 1562 1466 262 56 16 chr4 128105442 128105844 -27524276 - MTD LTR MaLR -20 399 1 1 1562 359 327 159 39 chr4 128108117 128108525 -27521595 + L2b LINE L2 2714 3155 -220 1 1562 197 159 23 0 chr4 128108724 128108768 -27521352 + CT-rich Low_complexity Low_complexity 2 46 0 1 1562 328 262 112 0 chr4 128109798 128109905 -27520215 - L1MEe LINE L1 -4022 832 714 1 1562 37515 59 1 23 chr4 128109905 128116957 -27513163 - L1Md_T LINE L1 0 6582 99 1 1562 263 252 43 43 chr4 128117003 128117119 -27513001 - Lx8 LINE L1 0 7473 7358 1 1562 270 0 0 0 chr4 128117123 128117153 -27512967 + (TTG)n Simple_repeat Simple_repeat 3 32 0 1 1562 364 243 148 19 chr4 128117193 128117348 -27512772 - Lx8 LINE L1 -273 7200 7026 1 1562 744 189 54 40 chr4 128117417 128117566 -27512554 - RSINE1 SINE B4 -14 151 1 1 1562 777 280 28 0 chr4 128118334 128118516 -27511604 + ID_B1 SINE B4 3 189 -35 1 1562 195 42 0 0 chr4 128118526 128118550 -27511570 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1562 336 77 0 0 chr4 128119378 128119430 -27510690 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1562 411 238 0 12 chr4 128119540 128119621 -27510499 - RSINE1 SINE B4 -84 81 2 1 1562 570 311 74 84 chr4 128120264 128120548 -27509572 + B4 SINE B4 1 281 -11 1 1562 194 159 0 43 chr4 128120552 128120598 -27509522 + CT-rich Low_complexity Low_complexity 3 46 0 1 1562 229 372 13 0 chr4 128120760 128120838 -27509282 - L2c LINE L2 -228 3159 3081 1 1562 1135 240 74 39 chr4 128121321 128121633 -27508487 + MER2 DNA MER2_type 16 338 -7 1 1562 289 323 10 20 chr4 128123142 128123243 -27506877 - MIRb SINE MIR -162 106 7 1 1562 316 332 85 42 chr4 128123446 128123889 -27506231 - L2b LINE L2 0 3426 2965 1 1562 286 231 143 71 chr4 128123963 128124075 -27506045 + PB1 SINE Alu 1 120 -7 1 1562 206 349 0 34 chr4 128124161 128124250 -27505870 + GA-rich Low_complexity Low_complexity 4 89 0 1 1562 496 321 65 12 chr4 128124304 128124474 -27505646 - MER58A DNA MER1_type -45 179 1 1 1562 286 354 117 12 chr4 128124580 128124743 -27505377 - Charlie16a DNA MER1_type -23 319 140 1 1562 404 132 12 0 chr4 128125041 128125124 -27504996 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 1 1562 435 326 65 25 chr4 128125315 128125516 -27504604 - B4A SINE B4 0 292 84 1 1562 1133 88 242 0 chr4 128125952 128126134 -27503986 - URR1A DNA MER1_type 0 226 1 1 1562 366 204 0 0 chr4 128126672 128126775 -27503345 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1562 672 211 68 0 chr4 128127235 128127368 -27502752 + B1_Mur4 SINE Alu 1 142 -8 1 1562 365 376 44 13 chr4 128127415 128127644 -27502476 - MIRb SINE MIR -32 236 1 1 1562 239 242 152 0 chr4 128129154 128129253 -27500867 - MIR SINE MIR -76 186 73 1 1562 970 256 9 19 chr4 128129300 128129515 -27500605 + ID_B1 SINE B4 2 214 -10 1 1562 994 216 139 25 chr4 128130315 128130552 -27499568 + B4 SINE B4 2 265 -27 1 1562 243 0 0 0 chr4 128130778 128130805 -27499315 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1562 272 294 53 66 chr4 128131625 128131851 -27498269 - RLTR42-int LTR ERVK -4151 1371 1149 1 1562 283 186 343 0 chr4 128132035 128132137 -27497983 + B1F SINE Alu 5 141 -8 1 1562 408 88 0 0 chr4 128132140 128132197 -27497923 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 1562 306 125 0 0 chr4 128132198 128132246 -27497874 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 1 1562 897 60 0 0 chr4 128132246 128132362 -27497758 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 1 1562 762 69 0 0 chr4 128132363 128132464 -27497656 + (GGAAA)n Simple_repeat Simple_repeat 1 101 0 2 1562 585 69 0 0 chr4 128133003 128133090 -27497030 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1562 305 291 0 32 chr4 128133157 128133274 -27496846 - RMER30 DNA MER1_type -3 199 2 2 1562 345 228 68 19 chr4 128134585 128134688 -27495432 - MLT1A1 LTR MaLR 0 408 301 2 1562 393 267 109 22 chr4 128135168 128135306 -27494814 - MER58A DNA MER1_type -1 223 74 2 1562 374 188 74 12 chr4 128135338 128135419 -27494701 + B4A SINE B4 6 91 -201 2 1562 386 305 64 134 chr4 128135419 128135733 -27494387 + B4A SINE B4 1 292 0 2 1562 290 345 36 18 chr4 128135771 128135883 -27494237 - Cheshire DNA MER1_type -2130 290 177 2 1562 262 385 71 20 chr4 128135911 128136107 -27494013 + MIRb SINE MIR 26 231 -37 2 1562 192 232 36 0 chr4 128136248 128136304 -27493816 + MIRb SINE MIR 62 119 -149 2 1562 267 213 0 0 chr4 128136367 128136442 -27493678 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1562 388 270 22 0 chr4 128136465 128136554 -27493566 - MTE2a LTR MaLR -279 100 10 2 1562 822 162 0 0 chr4 128136652 128136884 -27493236 + (TG)n Simple_repeat Simple_repeat 1 232 0 2 1562 842 301 75 19 chr4 128136891 128137158 -27492962 - B4 SINE B4 0 292 11 2 1562 398 257 26 9 chr4 128137921 128138035 -27492085 + Lx8 LINE L1 7220 7335 -138 2 1562 181 331 165 0 chr4 128138074 128138201 -27491919 - L2 LINE L2 -432 2987 2840 2 1562 228 256 115 0 chr4 128139956 128140034 -27490086 + RLTR9D LTR ERVK 39 125 -278 2 1562 519 17 0 0 chr4 128141812 128141872 -27488248 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1562 183 42 0 0 chr4 128143199 128143223 -27486897 + (G)n Simple_repeat Simple_repeat 1 24 0 2 1562 182 315 21 21 chr4 128143261 128143355 -27486765 + L3 LINE CR1 4161 4254 -235 2 1562 468 0 0 0 chr4 128143943 128143995 -27486125 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1562 1417 89 5 0 chr4 128144466 128144656 -27485464 + B2_Mm2 SINE B2 1 191 -4 2 1562 338 240 194 63 chr4 128144727 128144918 -27485202 - L1M5 LINE L1 -618 5506 5291 2 1562 730 241 133 5 chr4 128145404 128145592 -27484528 - B3 SINE B2 0 216 5 2 1562 270 0 0 0 chr4 128145680 128145710 -27484410 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 2 1562 812 245 10 47 chr4 128145878 128146071 -27484049 + ID_B1 SINE B4 2 187 -37 2 1562 226 336 16 16 chr4 128146095 128146216 -27483904 - L1M5 LINE L1 -1526 4620 4500 2 1562 429 252 145 8 chr4 128147150 128147274 -27482846 + B3 SINE B2 1 141 -75 2 1562 297 0 0 0 chr4 128147628 128147661 -27482459 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1562 192 312 113 52 chr4 128149450 128149565 -27480555 + MIRc SINE MIR 96 217 -51 2 1562 891 221 9 59 chr4 128149589 128149810 -27480310 - ID_B1 SINE B4 -14 210 1 2 1562 740 260 112 16 chr4 128152678 128152867 -27477253 + ID_B1 SINE B4 7 214 -78 2 1562 186 43 0 0 chr4 128152867 128152890 -27477230 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2 1562 325 315 139 90 chr4 128152890 128152923 -27477197 + B4 SINE B4 215 240 -52 2 1562 321 197 0 0 chr4 128153102 128153168 -27476952 + (CCA)n Simple_repeat Simple_repeat 3 68 0 2 1562 451 270 32 93 chr4 128153371 128153587 -27476533 - L1MB7 LINE L1 -100 6084 5882 2 1562 945 225 55 42 chr4 128153795 128154032 -27476088 - RLTR17 LTR ERVK -59 633 394 2 1562 446 182 13 0 chr4 128155566 128155643 -27474477 - ID4_ SINE ID -4 79 2 2 1562 237 184 18 106 chr4 128155722 128155892 -27474228 + (CATATA)n Simple_repeat Simple_repeat 4 158 0 2 1562 753 22 0 0 chr4 128158655 128158746 -27471374 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 1562 306 0 0 0 chr4 128158746 128158779 -27471341 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1562 200 271 45 40 chr4 128158840 128159017 -27471103 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 2 1562 295 262 49 21 chr4 128158978 128159122 -27470998 + (TG)n Simple_repeat Simple_repeat 2 149 0 2 1562 926 223 124 41 chr4 128159132 128159399 -27470721 - B4A SINE B4 -2 290 2 2 1562 420 20 0 0 chr4 128160247 128160296 -27469824 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1562 213 241 17 0 chr4 128161034 128161092 -27469028 + A-rich Low_complexity Low_complexity 2 60 0 2 1562 2911 183 23 20 chr4 128161711 128162268 -27467852 - Lx5 LINE L1 -79 6971 6413 2 1562 441 0 0 0 chr4 128162667 128162716 -27467404 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1562 2219 86 83 0 chr4 128164628 128164930 -27465190 - ORR1A2 LTR MaLR 0 327 1 2 1562 641 189 0 13 chr4 128165263 128165418 -27464702 + (CATA)n Simple_repeat Simple_repeat 4 156 0 2 1562 282 167 62 10 chr4 128165425 128165522 -27464598 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1562 742 286 22 0 chr4 128165626 128165808 -27464312 - MLT1A0 LTR MaLR -44 321 136 2 1562 231 275 12 36 chr4 128165830 128165913 -27464207 - MLT1A0 LTR MaLR -279 95 15 2 1562 396 0 0 0 chr4 128166191 128166235 -27463885 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1562 236 275 38 0 chr4 128166310 128166390 -27463730 - L1MA6 LINE L1 -44 6256 6174 2 1562 284 278 11 0 chr4 128166434 128166524 -27463596 + L1M2 LINE L1 5496 5586 -714 2 1562 313 199 124 97 chr4 128166537 128166682 -27463438 - MLT1C LTR MaLR -288 179 31 2 1562 427 295 417 0 chr4 128167637 128167813 -27462307 + B4A SINE B4 13 266 -26 2 1562 468 111 0 0 chr4 128167813 128167894 -27462226 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1562 427 325 147 0 chr4 128167894 128167919 -27462201 + B4A SINE B4 267 291 -1 2 1562 2573 80 3 0 chr4 128167942 128168268 -27461852 + ORR1A2 LTR MaLR 1 327 0 2 1562 369 0 0 0 chr4 128168855 128168896 -27461224 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1562 586 295 80 21 chr4 128168924 128169111 -27461009 - B4 SINE B4 -1 291 94 2 1562 186 103 0 0 chr4 128169143 128169172 -27460948 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1562 322 169 154 0 chr4 128169202 128169267 -27460853 - B4 SINE B4 -212 80 6 2 1562 3315 36 10 0 chr4 128169906 128170298 -27459822 - MTA_Mm LTR MaLR 0 396 1 2 1562 1435 207 179 111 chr4 128171579 128171668 -27458452 - RLTR20D LTR ERVK 0 568 478 2 1562 300 27 0 0 chr4 128171668 128171705 -27458415 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1562 1839 198 84 16 chr4 128171705 128171763 -27458357 - RLTR16 LTR ERVK -33 472 402 2 1562 453 19 0 0 chr4 128171763 128171817 -27458303 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1562 1839 198 84 16 chr4 128171817 128172200 -27457920 - RLTR16 LTR ERVK -104 401 1 2 1562 345 47 0 0 chr4 128172217 128172260 -27457860 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 2 1562 246 254 15 15 chr4 128172264 128172332 -27457788 - ID4 SINE ID -14 69 2 2 1562 392 363 29 12 chr4 128172336 128172509 -27457611 - MIRb SINE MIR -55 213 38 2 1562 756 295 61 46 chr4 128172529 128172792 -27457328 + B4A SINE B4 26 292 0 2 1562 21 0 0 0 chr4 128172852 128172873 -27457247 + AT_rich Low_complexity Low_complexity 1 21 0 2 1562 22 0 0 0 chr4 128173915 128173937 -27456183 + AT_rich Low_complexity Low_complexity 1 22 0 2 1562 398 311 82 52 chr4 128175273 128175495 -27454625 + B4 SINE B4 56 270 -22 2 1562 483 95 0 0 chr4 128175504 128175578 -27454542 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1562 315 310 19 70 chr4 128175676 128175832 -27454288 + MIR SINE MIR 23 170 -92 2 1562 247 305 80 56 chr4 128176867 128176992 -27453128 + MamRep605 Unknown Unknown 700 827 -49 2 1562 989 292 37 28 chr4 128177349 128177702 -27452418 + L1MC4 LINE L1 6662 7017 -1025 2 1562 1659 212 37 12 chr4 128178145 128178470 -27451650 + MTEa LTR MaLR 43 375 -4 2 1562 891 0 0 0 chr4 128178547 128178646 -27451474 + (CCCCAG)n Simple_repeat Simple_repeat 1 99 0 2 1562 510 292 200 18 chr4 128178950 128179308 -27450812 - L1MB3 LINE L1 -64 6119 5629 2 1562 195 42 0 0 chr4 128179491 128179515 -27450605 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1562 801 0 0 0 chr4 128179820 128179909 -27450211 + (CCCCAG)n Simple_repeat Simple_repeat 1 89 0 2 1562 252 108 90 0 chr4 128180857 128180927 -27449193 - B1_Mur1 SINE Alu 0 149 39 2 1562 375 23 0 0 chr4 128180929 128180973 -27449147 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1562 378 239 23 0 chr4 128180997 128181015 -27449105 - PB1D9 SINE Alu -20 100 81 2 1562 288 0 0 0 chr4 128181015 128181047 -27449073 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1562 390 203 0 0 chr4 128181047 128181116 -27449004 - B1_Mur4 SINE Alu -70 80 12 2 1562 366 23 0 0 chr4 128181126 128181169 -27448951 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 2 1562 21 36 0 0 chr4 128181252 128181280 -27448840 + AT_rich Low_complexity Low_complexity 1 28 0 2 1562 329 305 67 0 chr4 128181707 128181812 -27448308 + B4A SINE B4 4 115 -177 2 1562 365 314 28 64 chr4 128182224 128182333 -27447787 + B4 SINE B4 66 170 -122 2 1562 243 0 0 0 chr4 128182342 128182369 -27447751 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1562 432 0 0 0 chr4 128182369 128182416 -27447704 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1562 222 246 0 0 chr4 128183257 128183318 -27446802 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1562 684 236 28 7 chr4 128183543 128183684 -27446436 + ID_B1 SINE B4 81 224 0 2 1562 268 350 21 0 chr4 128184355 128184452 -27445668 + MIRb SINE MIR 19 117 -151 2 1562 1173 62 0 34 chr4 128184700 128184849 -27445271 + B1_Mus2 SINE Alu 3 146 -1 2 1562 1239 87 6 23 chr4 128184870 128185047 -27445073 + B2_Mm1t SINE B2 2 175 -18 2 1562 894 253 22 55 chr4 128185478 128185737 -27444383 + ID_B1 SINE B4 10 258 -34 2 1562 612 200 0 0 chr4 128187218 128187393 -27442727 + CT-rich Low_complexity Low_complexity 3 177 0 2 1562 447 63 0 0 chr4 128187806 128187869 -27442251 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 3 1563 1202 62 7 0 chr4 128189266 128189412 -27440708 - B1_Mus1 SINE Alu -1 147 1 3 1563 790 330 71 16 chr4 128191238 128191687 -27438433 - L1MA5 LINE L1 -13 6287 5814 3 1563 252 0 0 0 chr4 128191815 128191843 -27438277 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1563 1132 208 35 35 chr4 128192031 128192320 -27437800 + B4A SINE B4 1 289 -3 3 1563 234 229 0 0 chr4 128192334 128192404 -27437716 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1563 378 42 0 0 chr4 128192456 128192504 -27437616 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1563 1101 257 67 77 chr4 128193451 128193826 -27436294 - MTE2b LTR MaLR -8 371 1 3 1563 281 378 10 0 chr4 128193873 128193971 -27436149 + L2a LINE L2 3328 3426 0 3 1563 252 229 42 14 chr4 128194070 128194141 -27435979 - MIRb SINE MIR -6 262 190 3 1563 204 348 0 14 chr4 128194407 128194477 -27435643 - MIRc SINE MIR -134 134 66 3 1563 210 147 0 0 chr4 128194624 128194658 -27435462 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1563 966 271 49 25 chr4 128195347 128195631 -27434489 + B4 SINE B4 2 292 0 3 1563 226 269 0 122 chr4 128196797 128196920 -27433200 + Charlie8 DNA MER1_type 32 139 -2289 3 1563 378 264 35 0 chr4 128196957 128197044 -27433076 + ID_B1 SINE B4 76 165 -59 3 1563 569 246 85 89 chr4 128197891 128198172 -27431948 + B4 SINE B4 1 280 -12 3 1563 246 116 0 0 chr4 128198193 128198236 -27431884 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1563 862 153 12 0 chr4 128198228 128198391 -27431729 + GA-rich Low_complexity Low_complexity 3 167 0 3 1563 185 281 0 34 chr4 128198832 128198891 -27431229 - MER5B DNA MER1_type -27 151 95 3 1563 250 331 36 72 chr4 128200111 128200277 -27429843 - MTE2a LTR MaLR -14 365 206 3 1563 365 328 91 68 chr4 128200863 128201216 -27428904 - L1MC4 LINE L1 -2876 3338 2978 3 1563 23 0 0 0 chr4 128201242 128201265 -27428855 + AT_rich Low_complexity Low_complexity 1 23 0 3 1563 229 281 0 35 chr4 128201330 128201415 -27428705 - L1MC4 LINE L1 -3388 2826 2745 3 1563 1870 141 56 72 chr4 128201770 128202130 -27427990 - ORR1B1 LTR MaLR 0 394 41 3 1563 332 276 100 79 chr4 128202396 128202636 -27427484 - L1MC4 LINE L1 -4312 1903 1659 3 1563 518 43 0 14 chr4 128202636 128202706 -27427414 + (TGG)n Simple_repeat Simple_repeat 2 70 0 3 1563 360 0 0 0 chr4 128202742 128202782 -27427338 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1563 417 54 0 0 chr4 128203064 128203120 -27427000 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1563 508 313 57 18 chr4 128203182 128203462 -27426658 - L1MA9 LINE L1 -85 6227 5937 3 1563 272 288 102 36 chr4 128204312 128204449 -27425671 - ORR1E LTR MaLR -137 222 77 3 1563 374 302 15 53 chr4 128204487 128204620 -27425500 - MLT2B3 LTR ERVL -426 128 1 3 1563 328 268 3 7 chr4 128205883 128206191 -27423929 + (TG)n Simple_repeat Simple_repeat 1 306 0 3 1563 316 283 22 0 chr4 128206514 128206606 -27423514 + B4 SINE B4 2 95 -197 3 1563 853 114 0 0 chr4 128206606 128206729 -27423391 - Lx4A LINE L1 -587 6471 6349 3 1563 929 124 316 0 chr4 128206725 128206934 -27423186 + Lx4A LINE L1 6783 7057 -1 3 1563 737 241 103 20 chr4 128206955 128207150 -27422970 + B4 SINE B4 82 292 0 3 1563 1057 250 70 50 chr4 128208423 128208761 -27421359 - MTE2b LTR MaLR 0 379 1 3 1563 225 295 162 66 chr4 128209682 128209849 -27420271 + L2 LINE L2 2760 2942 -477 3 1563 1311 131 37 5 chr4 128209859 128210074 -27420046 + URR1A DNA MER1_type 1 222 -4 3 1563 1128 301 35 3 chr4 128210086 128210432 -27419688 + ORR1E LTR MaLR 1 357 -2 3 1563 3182 29 41 10 chr4 128210583 128210971 -27419149 - MTB LTR MaLR 0 400 1 3 1563 702 163 65 8 chr4 128212086 128212210 -27417910 + B1_Mur4 SINE Alu 3 133 -17 3 1563 927 116 0 0 chr4 128212214 128212343 -27417777 + B2_Mm2 SINE B2 1 129 -66 3 1563 543 31 0 0 chr4 128212350 128212415 -27417705 + (TAAA)n Simple_repeat Simple_repeat 4 68 0 3 1563 879 171 0 0 chr4 128213540 128213680 -27416440 + B1_Mur3 SINE Alu 10 149 0 3 1563 320 84 46 46 chr4 128213682 128213769 -27416351 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 3 1563 21 57 0 0 chr4 128214870 128214905 -27415215 + AT_rich Low_complexity Low_complexity 1 35 0 3 1563 629 236 41 0 chr4 128214925 128215048 -27415072 + RSINE1 SINE B4 12 139 -26 3 1563 1491 193 52 0 chr4 128215053 128215323 -27414797 - MTC LTR MaLR -85 336 53 3 1563 264 91 0 0 chr4 128216161 128216205 -27413915 + (TTAAA)n Simple_repeat Simple_repeat 3 46 0 3 1563 188 368 44 0 chr4 128216654 128216722 -27413398 - L2b LINE L2 -20 3355 3285 3 1563 1188 268 86 12 chr4 128216728 128217064 -27413056 + MLT1A0 LTR MaLR 5 365 0 3 1563 269 119 34 0 chr4 128217275 128217334 -27412786 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 3 1563 320 305 117 14 chr4 128217704 128217917 -27412203 - L2 LINE L2 -2230 1189 955 3 1563 719 289 49 87 chr4 128218347 128218635 -27411485 + B4A SINE B4 7 283 -9 3 1563 224 227 57 57 chr4 128218708 128218778 -27411342 + L2c LINE L2 3283 3352 -35 3 1563 630 294 123 53 chr4 128219682 128219926 -27410194 + B4A SINE B4 32 292 0 3 1563 922 160 30 65 chr4 128220725 128220926 -27409194 + B2_Mm2 SINE B2 1 194 -1 3 1563 1180 213 47 70 chr4 128221087 128221176 -27408944 + B4A SINE B4 2 88 -204 3 1563 2536 77 3 9 chr4 128221176 128221506 -27408614 - ORR1A4 LTR MaLR 0 329 2 3 1563 1180 213 47 70 chr4 128221506 128221714 -27408406 + B4A SINE B4 89 292 0 3 1563 334 279 13 0 chr4 128224762 128224841 -27405279 + ID4_ SINE ID 3 82 -1 3 1563 1015 242 92 23 chr4 128225052 128225175 -27404945 + B4 SINE B4 4 143 -149 3 1563 243 0 0 0 chr4 128225175 128225202 -27404918 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1563 1015 242 92 23 chr4 128225202 128225340 -27404780 + B4 SINE B4 144 283 -9 3 1563 231 36 0 0 chr4 128225369 128225397 -27404723 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1563 324 0 0 0 chr4 128225628 128225664 -27404456 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1563 604 279 20 33 chr4 128225666 128225818 -27404302 - B3A SINE B2 -26 172 23 3 1563 617 240 0 11 chr4 128227045 128227226 -27402894 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 3 1563 387 305 171 35 chr4 128227768 128228026 -27402094 + L1ME3B LINE L1 5774 6066 -174 3 1563 233 382 43 14 chr4 128228824 128228962 -27401158 - MIRc SINE MIR -10 258 117 3 1563 371 231 58 23 chr4 128230981 128231154 -27398966 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1563 232 248 42 36 chr4 128231190 128231357 -27398763 + (TG)n Simple_repeat Simple_repeat 2 169 0 3 1563 243 0 0 0 chr4 128231363 128231390 -27398730 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1563 265 216 30 74 chr4 128231416 128231551 -27398569 + (GTATG)n Simple_repeat Simple_repeat 2 130 0 3 1563 246 105 0 0 chr4 128231552 128231590 -27398530 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1563 558 252 21 7 chr4 128231635 128231779 -27398341 - L1M2 LINE L1 -549 5742 5597 3 1563 285 348 26 26 chr4 128232523 128232638 -27397482 - L3 LINE CR1 -472 4017 3903 3 1563 359 332 64 113 chr4 128232640 128233013 -27397107 - ORR1D2 LTR MaLR -7 363 9 3 1563 1163 186 22 31 chr4 128233166 128233394 -27396726 - URR1A DNA MER1_type 0 226 1 3 1563 1880 233 120 13 chr4 128233631 128234166 -27395954 - Lx7 LINE L1 -1229 6467 5876 3 1563 1279 282 127 0 chr4 128234183 128234725 -27395395 - L1MA7 LINE L1 -28 6263 5653 3 1563 901 143 21 0 chr4 128235316 128235456 -27394664 + B1_Mur2 SINE Alu 1 143 -6 3 1563 26 64 0 0 chr4 128235482 128235529 -27394591 + AT_rich Low_complexity Low_complexity 1 47 0 3 1563 607 193 287 21 chr4 128235837 128235980 -27394140 + B3A SINE B2 2 182 -16 3 1563 1005 9 0 0 chr4 128235983 128236097 -27394023 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 3 1563 291 54 0 0 chr4 128236635 128236672 -27393448 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 1563 466 354 6 12 chr4 128236680 128236843 -27393277 - RSINE1 SINE B4 -2 163 2 3 1563 217 301 109 55 chr4 128238654 128238837 -27391283 + B4A SINE B4 97 289 -3 3 1563 308 272 25 0 chr4 128238937 128239018 -27391102 + C-rich Low_complexity Low_complexity 3 85 0 3 1563 402 185 0 0 chr4 128240027 128240108 -27390012 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 3 1563 225 330 37 46 chr4 128241591 128241699 -27388421 - MIR SINE MIR -104 158 52 3 1563 315 329 32 13 chr4 128241869 128242026 -27388094 + (CATG)n Simple_repeat Simple_repeat 1 160 0 3 1563 316 321 9 9 chr4 128241914 128242024 -27388096 + (CA)n Simple_repeat Simple_repeat 1 110 0 3 1563 275 167 15 0 chr4 128242571 128242637 -27387483 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1563 1355 129 41 5 chr4 128243598 128243816 -27386304 + URR1A DNA MER1_type 1 226 0 3 1563 186 118 0 0 chr4 128244531 128244565 -27385555 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1563 26 50 0 0 chr4 128244855 128244895 -27385225 + AT_rich Low_complexity Low_complexity 1 40 0 3 1563 961 255 118 25 chr4 128245537 128245859 -27384261 + ORR1E LTR MaLR 4 355 -4 3 1563 561 15 0 0 chr4 128245899 128245965 -27384155 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 3 1563 1118 62 153 12 chr4 128246064 128246227 -27383893 + B2_Mm2 SINE B2 4 189 -6 3 1563 371 283 48 76 chr4 128246230 128246538 -27383582 + RSINE1 SINE B4 1 292 0 3 1563 395 294 0 6 chr4 128246609 128246790 -27383330 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1563 606 215 225 35 chr4 128246937 128247106 -27383014 + B3 SINE B2 1 201 -15 3 1563 224 188 0 115 chr4 128247109 128247187 -27382933 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1563 229 349 35 15 chr4 128247436 128247634 -27382486 + L1MC4 LINE L1 1246 1447 -4768 3 1563 296 311 0 0 chr4 128247634 128247708 -27382412 + ID4_ SINE ID 8 81 -2 3 1563 4615 71 15 3 chr4 128248093 128248683 -27381437 + Lx LINE L1 6056 6652 -2 4 1563 252 0 0 0 chr4 128248764 128248792 -27381328 + (GGA)n Simple_repeat Simple_repeat 3 30 0 4 1563 921 283 97 32 chr4 128248926 128249306 -27380814 + Lx8 LINE L1 6659 7063 -410 4 1563 625 264 50 60 chr4 128249378 128249609 -27380511 + MTD LTR MaLR 1 220 -159 4 1563 347 285 173 31 chr4 128249635 128249889 -27380231 + Lx8 LINE L1 7182 7471 -2 4 1563 332 184 39 7 chr4 128249959 128250112 -27380008 + (TA)n Simple_repeat Simple_repeat 2 159 0 4 1563 274 299 27 27 chr4 128250128 128250238 -27379882 + L1MC4 LINE L1 6634 6743 -1139 4 1563 330 26 0 0 chr4 128250251 128250290 -27379830 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1563 556 215 59 37 chr4 128250294 128250429 -27379691 - RSINE1 SINE B4 -26 139 2 4 1563 330 115 82 0 chr4 128250433 128250494 -27379626 + L1MC4 LINE L1 6778 6843 -1199 4 1563 833 129 7 0 chr4 128250595 128250734 -27379386 + (GGAA)n Simple_repeat Simple_repeat 4 143 0 4 1563 1191 55 7 0 chr4 128251214 128251360 -27378760 - B1_Mus1 SINE Alu 0 148 2 4 1563 230 294 0 0 chr4 128251371 128251439 -27378681 - L1MB1 LINE L1 -250 5939 5872 4 1563 990 285 68 22 chr4 128251466 128251875 -27378245 - L1M2 LINE L1 -492 5799 5372 4 1563 480 288 148 38 chr4 128253042 128253360 -27376760 - L2b LINE L2 -119 3268 2916 4 1563 185 320 18 72 chr4 128254076 128254187 -27375933 + MIR SINE MIR 6 110 -152 4 1563 1275 245 76 36 chr4 128254465 128254766 -27375354 + MTE2b LTR MaLR 4 316 -63 4 1563 1308 205 118 16 chr4 128254772 128255085 -27375035 + MTD LTR MaLR 10 354 -65 4 1563 992 156 205 54 chr4 128255093 128255478 -27374642 - RLTR20A LTR ERVK -2 539 97 4 1563 213 65 0 0 chr4 128255503 128255534 -27374586 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1563 508 114 0 0 chr4 128255534 128255604 -27374516 - B1_Mus2 SINE Alu 0 147 78 4 1563 821 101 0 9 chr4 128255602 128255712 -27374408 - RLTR20A LTR ERVK -432 109 1 4 1563 280 192 81 14 chr4 128255712 128255768 -27374352 + MTE2b LTR MaLR 301 361 -9 4 1563 1337 92 54 0 chr4 128257070 128257255 -27372865 + B2_Mm2 SINE B2 1 195 0 4 1563 225 0 0 0 chr4 128257402 128257427 -27372693 + (TCC)n Simple_repeat Simple_repeat 3 27 0 4 1563 551 269 0 0 chr4 128258111 128258215 -27371905 + RSINE1 SINE B4 3 106 -59 4 1563 261 0 0 0 chr4 128258229 128258258 -27371862 + (CCA)n Simple_repeat Simple_repeat 1 29 0 4 1563 772 254 9 99 chr4 128260222 128260445 -27369675 + ORR1D2 LTR MaLR 3 205 -165 4 1563 2159 226 70 12 chr4 128260432 128260943 -27369177 + ORR1D2-int LTR MaLR 103 643 -727 4 1563 345 272 21 11 chr4 128262223 128262316 -27367804 + MIRb SINE MIR 173 266 -2 4 1563 344 341 0 0 chr4 128263589 128263795 -27366325 - MMSAT4 Satellite Satellite -13 206 1 4 1563 2871 126 22 83 chr4 128264649 128265201 -27364919 + RLTR28 LTR ERVL 7 524 0 4 1563 539 211 0 11 chr4 128267704 128267886 -27362234 + GA-rich Low_complexity Low_complexity 1 180 0 4 1563 387 0 0 0 chr4 128268247 128268290 -27361830 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 4 1563 626 279 157 65 chr4 128270315 128270913 -27359207 + L1MCa LINE L1 9 661 -5847 4 1563 508 258 65 16 chr4 128270934 128271119 -27359001 + L1MCa LINE L1 717 910 -5598 4 1563 265 271 29 0 chr4 128271146 128271216 -27358904 + B4A SINE B4 74 145 -147 4 1563 539 243 26 18 chr4 128271161 128271274 -27358846 + PB1D7 SINE Alu 6 119 -1 4 1563 423 217 83 7 chr4 128271277 128271421 -27358699 + L1MCa LINE L1 2344 2498 -3823 4 1563 842 246 31 38 chr4 128271422 128271713 -27358407 + B4A SINE B4 2 290 -2 4 1563 209 294 9 0 chr4 128271725 128271834 -27358286 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 1563 796 281 96 49 chr4 128271847 128272454 -27357666 + L1MCa LINE L1 2497 3135 -3186 4 1563 402 57 0 0 chr4 128272454 128272507 -27357613 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 4 1563 796 281 96 49 chr4 128272507 128272547 -27357573 + L1MCa LINE L1 3136 3173 -3148 4 1563 348 221 13 7 chr4 128272576 128272663 -27357457 + B3 SINE B2 2 85 -110 4 1563 1340 289 47 2 chr4 128272667 128273138 -27356982 - Lx8 LINE L1 -405 7068 6577 4 1563 1105 238 134 9 chr4 128273157 128273431 -27356689 - Lx8 LINE L1 -984 6489 6195 4 1563 459 0 0 0 chr4 128273431 128273482 -27356638 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1563 1105 265 139 13 chr4 128273482 128273585 -27356535 - Lx8 LINE L1 -1279 6194 6066 4 1563 1203 241 116 20 chr4 128273668 128274009 -27356111 + MTD LTR MaLR 8 418 -1 4 1563 944 127 37 0 chr4 128274069 128274203 -27355917 + B1_Mus1 SINE Alu 1 139 -9 4 1563 186 43 0 0 chr4 128274218 128274241 -27355879 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1563 1053 267 45 62 chr4 128274244 128274800 -27355320 - Lx8 LINE L1 -1553 5920 5357 4 1563 4458 143 127 29 chr4 128274800 128275704 -27354416 + RLTR22_Mur LTR ERVK 1 993 -855 4 1563 1189 258 103 21 chr4 128275734 128275814 -27354306 - Lx8 LINE L1 -558 5322 5244 4 1563 213 39 0 0 chr4 128275814 128275840 -27354280 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1563 1189 258 103 21 chr4 128275840 128276186 -27353934 - Lx8 LINE L1 -637 5243 4862 4 1563 871 210 12 6 chr4 128276186 128276349 -27353771 + ORR1D1 LTR MaLR 1 164 -210 4 1563 1484 177 155 124 chr4 128276350 128276795 -27353325 - RMER6B LTR ERVK -2 459 1 4 1563 868 196 113 5 chr4 128276804 128276989 -27353131 + ORR1D1 LTR MaLR 170 374 0 4 1563 2760 249 112 17 chr4 128276989 128278059 -27352061 - Lx8 LINE L1 -1013 4864 3693 4 1563 300 266 100 60 chr4 128278093 128278193 -27351927 + L1MD LINE L1 5318 5421 -2364 4 1563 1072 236 78 22 chr4 128278198 128278467 -27351653 + B4A SINE B4 6 289 -3 4 1563 332 245 265 43 chr4 128278486 128278648 -27351472 + L1MD LINE L1 5395 5592 -2403 4 1563 198 0 0 0 chr4 128278648 128278670 -27351450 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1563 1115 75 0 52 chr4 128278670 128278825 -27351295 - B1_Mm SINE Alu 0 147 1 4 1563 1189 324 44 20 chr4 128278829 128279462 -27350658 + L1MC1 LINE L1 5584 6231 -102 4 1563 191 311 16 0 chr4 128280735 128280796 -27349324 + MIR SINE MIR 182 243 -19 4 1563 300 309 153 29 chr4 128280854 128281024 -27349096 + MIRc SINE MIR 14 204 -64 4 1563 630 343 34 8 chr4 128281104 128281342 -27348778 + MIR SINE MIR 11 254 -8 4 1563 187 316 18 0 chr4 128282483 128282540 -27347580 + L2 LINE L2 2405 2462 -957 4 1563 384 194 0 15 chr4 128282549 128282617 -27347503 + PB1D10 SINE Alu 30 96 -21 4 1563 246 32 0 0 chr4 128282618 128282649 -27347471 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4 1563 1200 35 14 0 chr4 128283246 128283391 -27346729 + B1_Mus2 SINE Alu 1 147 0 4 1563 343 307 77 23 chr4 128283886 128284016 -27346104 - L2b LINE L2 -14 3361 3225 4 1563 261 289 84 90 chr4 128285930 128286141 -27343979 - L2b LINE L2 -1 3386 3193 4 1563 396 0 0 0 chr4 128287070 128287114 -27343006 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1563 214 361 52 0 chr4 128287755 128287852 -27342268 + MIR SINE MIR 112 213 -49 4 1563 2163 196 48 2 chr4 128288001 128288394 -27341726 + MTC LTR MaLR 2 412 -9 4 1563 310 326 43 77 chr4 128288443 128288652 -27341468 + MIRb SINE MIR 22 223 -45 4 1563 932 290 32 50 chr4 128288770 128289053 -27341067 - B4A SINE B4 -7 285 8 4 1563 2362 77 12 41 chr4 128289053 128289218 -27340902 + ORR1A4 LTR MaLR 1 169 -160 4 1563 1523 73 0 0 chr4 128289218 128289410 -27340710 + B2_Mm1a SINE B2 2 193 0 4 1563 2362 77 12 41 chr4 128289410 128289583 -27340537 + ORR1A4 LTR MaLR 170 329 0 4 1563 315 286 62 12 chr4 128289584 128289744 -27340376 + MIR SINE MIR 104 262 0 4 1563 1231 48 7 0 chr4 128289892 128290039 -27340081 + B1_Mus1 SINE Alu 1 148 0 4 1563 201 171 0 0 chr4 128290039 128290074 -27340046 + A-rich Low_complexity Low_complexity 1 35 0 4 1563 222 37 0 0 chr4 128290086 128290113 -27340007 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1563 720 130 138 0 chr4 128290113 128290236 -27339884 - B1_Mur4 SINE Alu -10 140 1 4 1563 381 335 65 35 chr4 128290250 128290451 -27339669 - MIRb SINE MIR -2 266 60 4 1563 27 0 0 0 chr4 128290789 128290816 -27339304 + AT_rich Low_complexity Low_complexity 1 27 0 4 1563 280 321 37 28 chr4 128290963 128291072 -27339048 - Charlie7a DNA MER1_type -5 267 158 4 1563 551 258 27 87 chr4 128291100 128291283 -27338837 - B3A SINE B2 -1 197 26 4 1563 360 306 70 27 chr4 128291314 128291499 -27338621 - MIR SINE MIR -2 260 68 4 1563 451 314 0 25 chr4 128291543 128291664 -27338456 + ID_B1 SINE B4 78 195 -29 4 1563 269 321 75 65 chr4 128291728 128291928 -27338192 - L2b LINE L2 -201 3174 2973 4 1563 918 244 41 141 chr4 128292044 128292489 -27337631 + MTD LTR MaLR 18 404 -15 4 1563 412 276 83 26 chr4 128295973 128296129 -27333991 - ID_B1 SINE B4 -21 203 39 4 1563 540 0 0 0 chr4 128296152 128296212 -27333908 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1563 226 255 50 30 chr4 128296631 128296732 -27333388 + L1M3 LINE L1 3887 3989 -2151 4 1563 1251 54 0 0 chr4 128297090 128297237 -27332883 + B1_Mus2 SINE Alu 1 147 0 4 1563 357 279 124 9 chr4 128297588 128297693 -27332427 + B1F SINE Alu 20 136 -13 4 1563 491 222 47 23 chr4 128298001 128298130 -27331990 + RSINE1 SINE B4 3 134 -31 4 1563 278 275 0 36 chr4 128298226 128298242 -27331878 + ID_B1 SINE B4 144 223 -1 4 1563 324 182 0 15 chr4 128298242 128298309 -27331811 + B1F SINE Alu 82 147 -2 4 1563 1100 196 15 15 chr4 128298441 128298643 -27331477 + B3 SINE B2 9 210 -6 4 1563 361 242 21 0 chr4 128298690 128298785 -27331335 + L1M5 LINE L1 2874 2970 -3176 4 1563 1217 61 7 0 chr4 128298921 128299068 -27331052 + B1_Mus1 SINE Alu 1 148 0 4 1563 276 102 0 0 chr4 128299068 128299117 -27331003 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1563 1497 246 81 28 chr4 128299498 128299891 -27330229 + MTD LTR MaLR 6 419 0 4 1563 671 318 89 12 chr4 128299970 128300228 -27329892 - MLT1A1 LTR MaLR -53 355 78 4 1563 419 351 89 36 chr4 128300272 128300520 -27329600 + L1MEc LINE L1 845 1105 -5982 4 1563 984 271 79 100 chr4 128300710 128301268 -27328852 + MT2B LTR ERVL 1 546 -55 4 1563 1158 118 65 0 chr4 128301276 128301462 -27328658 - ORR1C1 LTR MaLR -180 198 1 4 1563 417 336 117 28 chr4 128301543 128301791 -27328329 + L1MEc LINE L1 1304 1573 -5761 4 1563 227 283 138 48 chr4 128302363 128302508 -27327612 - MamRep1161 DNA TcMar -377 580 423 4 1563 334 179 0 35 chr4 128303230 128303317 -27326803 + CT-rich Low_complexity Low_complexity 1 84 0 4 1563 3010 161 54 11 chr4 128303357 128304180 -27325940 + RMER19B LTR ERVK 1 902 0 4 1563 2881 154 9 58 chr4 128304257 128304793 -27325327 + RLTR28 LTR ERVL 1 510 -14 4 1563 281 324 122 34 chr4 128304810 128304957 -27325163 + LTR33A_ LTR ERVL 195 354 -177 5 1563 1927 187 206 26 chr4 128305017 128305511 -27324609 + RMER19B LTR ERVK 308 890 -12 5 1563 280 303 31 47 chr4 128305871 128305999 -27324121 - MLT1N2 LTR MaLR -31 531 406 5 1563 260 270 26 51 chr4 128306406 128306484 -27323636 + LTR79 LTR ERVL 2 77 -450 5 1563 240 322 67 0 chr4 128307045 128307135 -27322985 - L2b LINE L2 -66 3309 3214 5 1563 446 158 49 0 chr4 128307190 128307272 -27322848 + B3A SINE B2 1 86 -112 5 1563 742 221 7 0 chr4 128307911 128308047 -27322073 + B3 SINE B2 80 216 0 5 1563 214 241 23 0 chr4 128308131 128308218 -27321902 + GA-rich Low_complexity Low_complexity 5 93 0 5 1563 244 105 0 0 chr4 128309105 128309143 -27320977 + tRNA-Phe-TTY tRNA tRNA 1 38 -38 5 1563 200 122 41 0 chr4 128309320 128309369 -27320751 + T-rich Low_complexity Low_complexity 2 52 0 5 1563 214 303 135 0 chr4 128309854 128309943 -27320177 + B4A SINE B4 27 127 -165 5 1563 755 185 0 56 chr4 128309867 128310027 -27320093 + B3A SINE B2 43 193 -5 5 1563 25 0 0 0 chr4 128310093 128310118 -27320002 + AT_rich Low_complexity Low_complexity 1 25 0 5 1563 2909 55 0 0 chr4 128310392 128310738 -27319382 - ORR1A1 LTR MaLR 0 346 1 5 1563 1493 225 105 16 chr4 128311397 128311767 -27318353 + MTD LTR MaLR 3 405 -14 5 1563 232 231 33 133 chr4 128311754 128311844 -27318276 - LTR50 LTR ERVL -580 215 135 5 1563 485 350 99 67 chr4 128311856 128312010 -27318110 + L2 LINE L2 2364 2502 -917 5 1563 297 272 12 36 chr4 128312010 128312094 -27318026 - ID4 SINE ID -1 82 1 5 1563 485 350 99 67 chr4 128312094 128312564 -27317556 + L2 LINE L2 2503 3008 -411 5 1563 458 296 153 6 chr4 128313134 128313304 -27316816 - B3A SINE B2 -3 195 1 5 1563 331 334 236 17 chr4 128313435 128313781 -27316339 + MLT1G1 LTR MaLR 98 519 -60 5 1563 277 320 38 0 chr4 128313924 128314019 -27316101 + B1F SINE Alu 1 99 -50 5 1563 543 261 176 5 chr4 128314922 128315126 -27314994 - MLT1B LTR MaLR -132 258 20 5 1563 476 338 130 44 chr4 128316077 128316461 -27313659 + LTR33 LTR ERVL 51 467 -48 5 1563 947 287 30 170 chr4 128316576 128317046 -27313074 + MTD LTR MaLR 1 404 -15 5 1563 288 188 0 0 chr4 128317184 128317248 -27312872 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1563 243 253 0 0 chr4 128317486 128317565 -27312555 + C-rich Low_complexity Low_complexity 1 79 0 5 1563 1245 253 67 25 chr4 128317618 128317979 -27312141 - MTEa LTR MaLR 0 379 4 5 1563 572 308 32 16 chr4 128318726 128318911 -27311209 - MIRb SINE MIR -45 223 36 5 1563 327 346 0 9 chr4 128318957 128319062 -27311058 + MIRb SINE MIR 26 129 -139 5 1564 927 266 11 0 chr4 128320093 128320277 -27309843 - ID_B1 SINE B4 -20 204 19 5 1564 186 43 0 0 chr4 128320277 128320300 -27309820 + (CCCCAG)n Simple_repeat Simple_repeat 5 27 0 5 1564 440 305 135 86 chr4 128320384 128320732 -27309388 + MLT1A0 LTR MaLR 1 365 0 5 1564 776 175 32 0 chr4 128321170 128321296 -27308824 + B3 SINE B2 1 130 -86 5 1564 424 146 11 11 chr4 128321329 128321419 -27308701 + GA-rich Low_complexity Low_complexity 3 92 0 5 1564 683 252 35 0 chr4 128321465 128321608 -27308512 + B1_Mur2 SINE Alu 2 149 0 5 1564 982 285 98 21 chr4 128321797 128322134 -27307986 + MTEa LTR MaLR 14 376 -3 5 1564 640 274 19 6 chr4 128323556 128323714 -27306406 - B3 SINE B2 0 216 57 5 1564 237 315 10 98 chr4 128324045 128324147 -27305973 + MamRep38 DNA hAT 115 207 -88 5 1564 1027 39 0 0 chr4 128324369 128324496 -27305624 - B1_Mus1 SINE Alu -20 128 2 5 1564 327 49 0 0 chr4 128325399 128325440 -27304680 + (CAG)n Simple_repeat Simple_repeat 2 42 0 5 1564 274 245 125 12 chr4 128325452 128325542 -27304578 - MTEb LTR MaLR 0 379 280 5 1564 180 111 0 0 chr4 128326464 128326491 -27303629 + (CATG)n Simple_repeat Simple_repeat 3 29 0 5 1564 763 290 124 23 chr4 128326492 128326750 -27303370 - B4A SINE B4 -7 285 2 5 1564 189 0 0 0 chr4 128326810 128326831 -27303289 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1564 815 289 83 12 chr4 128327638 128327890 -27302230 + MLT1C LTR MaLR 177 446 -21 5 1564 1250 311 35 26 chr4 128328165 128328618 -27301502 - RMER5 LTR ERV1 -5 529 73 5 1564 486 0 0 0 chr4 128328849 128328903 -27301217 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1564 223 339 56 40 chr4 128329222 128329348 -27300772 - MIRc SINE MIR -101 167 40 5 1564 514 317 64 5 chr4 128329557 128329744 -27300376 - MIR SINE MIR -64 198 1 5 1564 504 276 159 10 chr4 128330466 128330667 -27299453 - MIR SINE MIR -14 248 18 5 1564 21 0 0 0 chr4 128330714 128330735 -27299385 + AT_rich Low_complexity Low_complexity 1 21 0 5 1564 247 316 25 92 chr4 128331432 128331613 -27298507 + MIRb SINE MIR 43 214 -54 5 1564 36 77 0 0 chr4 128332064 128332142 -27297978 + GC_rich Low_complexity Low_complexity 1 78 0 5 1564 276 318 75 0 chr4 128333314 128333421 -27296699 - L2b LINE L2 -218 3157 3043 5 1564 243 157 0 0 chr4 128333721 128333772 -27296348 + A-rich Low_complexity Low_complexity 1 51 0 5 1564 541 150 74 74 chr4 128333792 128333914 -27296206 + B1F2 SINE Alu 1 122 -27 5 1564 662 220 147 24 chr4 128334473 128334731 -27295389 - B4 SINE B4 -3 289 11 5 1564 219 243 0 114 chr4 128334662 128334741 -27295379 - ID4_ SINE ID -8 75 6 5 1564 191 383 17 0 chr4 128335004 128335064 -27295056 + MIRb SINE MIR 57 117 -151 5 1564 577 198 94 0 chr4 128335233 128335339 -27294781 + ID_B1 SINE B4 101 216 -8 5 1564 232 173 0 55 chr4 128335591 128335646 -27294474 + (CAA)n Simple_repeat Simple_repeat 1 52 0 5 1564 214 271 0 0 chr4 128337015 128337063 -27293057 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1564 592 244 116 116 chr4 128337063 128337355 -27292765 - B4 SINE B4 0 292 1 5 1564 197 246 189 14 chr4 128337405 128337479 -27292641 - MIRb SINE MIR -4 264 178 5 1564 483 314 36 30 chr4 128337750 128337942 -27292178 - B4A SINE B4 -37 187 2 5 1564 228 86 0 0 chr4 128338060 128338095 -27292025 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1564 213 119 0 0 chr4 128339550 128339592 -27290528 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1564 365 204 183 0 chr4 128339777 128339870 -27290250 + B3 SINE B2 93 202 -14 5 1564 242 321 38 13 chr4 128340128 128340207 -27289913 - RMER5 LTR ERV1 -191 343 263 5 1564 456 193 147 17 chr4 128340657 128340773 -27289347 + B3 SINE B2 81 211 -5 5 1564 300 176 0 0 chr4 128340808 128340876 -27289244 + CT-rich Low_complexity Low_complexity 1 68 0 5 1564 216 67 0 0 chr4 128341490 128341520 -27288600 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1564 956 100 0 54 chr4 128341520 128341668 -27288452 - B1_Mus1 SINE Alu -7 141 2 5 1564 592 236 0 9 chr4 128341796 128341907 -27288213 + PB1D10 SINE Alu 3 112 -5 5 1564 642 258 38 25 chr4 128341927 128342086 -27288034 + RSINE1 SINE B4 3 163 -2 5 1564 228 67 0 0 chr4 128342102 128342132 -27287988 + (CATG)n Simple_repeat Simple_repeat 2 31 0 5 1564 224 308 108 42 chr4 128342434 128342600 -27287520 + MIRb SINE MIR 22 198 -70 5 1564 920 134 207 5 chr4 128342609 128342797 -27287323 - URR1A DNA MER1_type 0 226 1 5 1564 316 130 74 0 chr4 128343122 128343176 -27286944 - MTEb LTR MaLR -231 148 91 5 1564 458 269 69 21 chr4 128344284 128344321 -27285799 + RSINE1 SINE B4 3 40 -125 5 1564 510 17 0 0 chr4 128344321 128344380 -27285740 + (GGAAA)n Simple_repeat Simple_repeat 2 60 0 5 1564 458 269 69 21 chr4 128344380 128344486 -27285634 + RSINE1 SINE B4 41 152 -13 5 1564 1061 265 203 19 chr4 128344930 128345353 -27284767 + MLT1D LTR MaLR 5 505 0 5 1564 963 236 82 35 chr4 128345513 128345768 -27284352 - B4 SINE B4 -2 290 24 5 1564 450 75 0 0 chr4 128345782 128345849 -27284271 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1564 357 316 25 17 chr4 128345849 128345963 -27284157 - MIR SINE MIR -64 198 84 5 1564 291 292 115 13 chr4 128346149 128346305 -27283815 - L1MEf LINE L1 -2477 3842 3671 5 1564 818 130 76 8 chr4 128346353 128346485 -27283635 - B1_Mus2 SINE Alu 0 147 7 5 1564 355 273 117 90 chr4 128346358 128346503 -27283617 - B4 SINE B4 -71 221 73 5 1564 311 250 0 0 chr4 128346614 128346686 -27283434 - L1MC LINE L1 -2679 3467 3396 5 1564 278 297 56 24 chr4 128346979 128347182 -27282938 - L1MEf LINE L1 -3171 3148 2931 5 1564 586 141 172 0 chr4 128347184 128347283 -27282837 - PB1D9 SINE Alu -3 117 2 5 1564 378 302 112 50 chr4 128347326 128347664 -27282456 - L1MEf LINE L1 -4678 1737 1379 5 1564 390 42 0 0 chr4 128348197 128348245 -27281875 + (CCCTG)n Simple_repeat Simple_repeat 1 48 0 5 1564 213 188 0 55 chr4 128348373 128348446 -27281674 + CT-rich Low_complexity Low_complexity 2 70 0 5 1564 613 224 12 12 chr4 128348468 128348708 -27281412 + CT-rich Low_complexity Low_complexity 1 240 0 5 1564 292 290 48 8 chr4 128348833 128348958 -27281162 - L1MEf LINE L1 -6197 203 74 5 1564 195 271 0 0 chr4 128349069 128349139 -27280981 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1564 337 230 31 21 chr4 128350202 128350491 -27279629 + (CAGAGA)n Simple_repeat Simple_repeat 1 291 0 5 1564 1103 84 151 0 chr4 128351235 128351401 -27278719 - B2_Mm2 SINE B2 -4 191 1 5 1564 289 193 211 0 chr4 128353029 128353119 -27277001 - L1MA5 LINE L1 -5 6286 6179 5 1564 1615 179 95 23 chr4 128353134 128353483 -27276637 + ORR1D1 LTR MaLR 1 374 0 5 1564 414 275 152 17 chr4 128353483 128353779 -27276341 - L1MA5 LINE L1 -144 6156 5821 5 1564 287 218 24 134 chr4 128353810 128353937 -27276183 + MIR SINE MIR 5 117 -145 5 1564 302 251 179 21 chr4 128353941 128354274 -27275846 - L1MD LINE L1 -1861 4285 3904 5 1564 1116 134 165 0 chr4 128354276 128354470 -27275650 + URR1A DNA MER1_type 1 226 0 5 1564 786 218 17 64 chr4 128354888 128355123 -27274997 + B4A SINE B4 1 224 -68 5 1564 693 114 0 0 chr4 128355131 128355236 -27274884 + (GGGA)n Simple_repeat Simple_repeat 4 108 0 6 1564 651 60 0 0 chr4 128355243 128355327 -27274793 + (GGAAA)n Simple_repeat Simple_repeat 3 86 0 6 1564 480 117 0 0 chr4 128355358 128355435 -27274685 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1564 23 68 0 0 chr4 128356845 128356889 -27273231 + AT_rich Low_complexity Low_complexity 1 44 0 6 1564 31 0 0 0 chr4 128356962 128356993 -27273127 + AT_rich Low_complexity Low_complexity 1 31 0 6 1564 833 175 29 0 chr4 128357289 128357426 -27272694 - B1_Mur1 SINE Alu -8 141 1 6 1564 269 250 327 6 chr4 128357626 128357791 -27272329 + L2a LINE L2 3208 3425 -1 6 1564 450 274 89 63 chr4 128358437 128358706 -27271414 + B4 SINE B4 1 276 -16 6 1564 966 76 0 0 chr4 128358708 128358840 -27271280 + (GA)n Simple_repeat Simple_repeat 1 132 0 6 1564 294 278 89 15 chr4 128358840 128358975 -27271145 - L1MC LINE L1 -2240 5642 5498 6 1564 681 135 0 0 chr4 128360038 128360164 -27269956 + (TG)n Simple_repeat Simple_repeat 2 127 0 6 1564 1092 224 19 89 chr4 128360194 128360508 -27269612 - B4 SINE B4 0 292 1 6 1564 370 358 67 18 chr4 128360784 128361009 -27269111 - MIRb SINE MIR -16 252 17 6 1564 394 309 19 13 chr4 128362087 128362241 -27267879 - L1ME2z LINE L1 -13 6431 6277 6 1564 664 154 9 0 chr4 128362283 128362393 -27267727 + B1_Mur3 SINE Alu 39 149 0 6 1564 252 0 0 0 chr4 128362395 128362423 -27267697 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1564 328 258 128 8 chr4 128362423 128362548 -27267572 - L1ME2z LINE L1 -186 6258 6119 6 1564 711 260 19 81 chr4 128362855 128363064 -27267056 - B3A SINE B2 -2 196 1 6 1564 2380 149 76 109 chr4 128363082 128363633 -27266487 - RMER16 LTR ERVK 0 533 1 6 1564 599 262 137 21 chr4 128363862 128364156 -27265964 + L1MA6 LINE L1 5946 6288 -12 6 1564 645 278 90 50 chr4 128364269 128364546 -27265574 + B4A SINE B4 3 290 -2 6 1564 284 285 6 0 chr4 128364554 128364733 -27265387 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1564 1256 139 64 0 chr4 128364792 128364994 -27265126 - B3 SINE B2 0 216 2 6 1564 241 301 57 39 chr4 128365197 128365363 -27264757 + MIR SINE MIR 25 196 -72 6 1564 212 161 36 0 chr4 128366151 128366207 -27263913 + T-rich Low_complexity Low_complexity 3 60 0 6 1564 426 151 0 0 chr4 128366615 128366688 -27263432 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1564 201 200 0 28 chr4 128367511 128367547 -27262573 + MER5A DNA MER1_type 155 189 0 6 1564 308 306 0 0 chr4 128367798 128367870 -27262250 + MER58C DNA MER1_type 129 200 -15 6 1564 991 219 16 0 chr4 128368901 128369093 -27261027 - B3 SINE B2 -21 195 1 6 1564 393 256 22 11 chr4 128369152 128369243 -27260877 - ID_B1 SINE B4 -131 93 2 6 1564 236 333 79 8 chr4 128369657 128369784 -27260336 - RMER12 LTR ERVK -467 855 720 6 1564 495 134 0 0 chr4 128369784 128369866 -27260254 + (CCCCCT)n Simple_repeat Simple_repeat 6 87 0 6 1564 363 330 108 33 chr4 128370096 128370337 -27259783 - MIRb SINE MIR -9 259 1 6 1564 306 180 0 0 chr4 128371505 128371566 -27258554 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1564 1034 154 110 0 chr4 128371707 128371889 -27258231 + B3 SINE B2 1 202 -14 6 1564 382 260 115 23 chr4 128371906 128372036 -27258084 + B1F SINE Alu 1 142 -7 6 1564 228 100 0 0 chr4 128372185 128372225 -27257895 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1564 444 212 12 0 chr4 128372246 128372326 -27257794 + B1_Mur1 SINE Alu 60 140 -9 6 1564 767 242 12 24 chr4 128373071 128373236 -27256884 + RSINE1 SINE B4 3 165 0 6 1564 436 275 33 0 chr4 128373659 128373779 -27256341 - MER5A DNA MER1_type 0 189 66 6 1564 1077 257 17 54 chr4 128374534 128374830 -27255290 - B4A SINE B4 0 292 8 6 1564 246 241 151 35 chr4 128376472 128376558 -27253562 - B1F SINE Alu -8 141 46 6 1564 320 205 11 67 chr4 128377360 128377449 -27252671 + L1MB5 LINE L1 5705 5788 -392 6 1564 249 222 0 0 chr4 128377458 128377521 -27252599 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 6 1564 375 273 173 11 chr4 128377526 128377756 -27252364 + L1MB5 LINE L1 5773 6035 -145 6 1564 1123 97 0 0 chr4 128378615 128378760 -27251360 - B1_Mm SINE Alu -1 146 2 6 1564 459 288 216 5 chr4 128378919 128379118 -27251002 + B4A SINE B4 34 274 -18 6 1564 29 0 0 0 chr4 128379166 128379195 -27250925 + AT_rich Low_complexity Low_complexity 1 29 0 6 1564 524 279 93 31 chr4 128379609 128379868 -27250252 - B4A SINE B4 -14 278 4 6 1564 270 116 0 0 chr4 128380089 128380132 -27249988 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 6 1564 1336 7 0 0 chr4 128380777 128380924 -27249196 + B1_Mus2 SINE Alu 1 147 0 6 1564 1121 163 32 54 chr4 128381201 128381422 -27248698 - URR1B DNA MER1_type -2 223 8 6 1564 391 218 0 33 chr4 128381721 128381811 -27248309 + PB1D10 SINE Alu 29 115 -2 6 1564 256 298 128 32 chr4 128382050 128382175 -27247945 - MER2 DNA MER2_type -184 161 25 6 1564 227 342 0 0 chr4 128382342 128382421 -27247699 + (CAG)n Simple_repeat Simple_repeat 1 79 0 6 1564 716 283 108 27 chr4 128382731 128382989 -27247131 + B4A SINE B4 14 292 0 6 1564 510 168 28 34 chr4 128382994 128383173 -27246947 + (CATA)n Simple_repeat Simple_repeat 1 178 0 6 1564 462 243 17 0 chr4 128383148 128383325 -27246795 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1564 192 212 0 0 chr4 128383484 128383517 -27246603 - MIRb SINE MIR -32 236 204 6 1564 605 194 49 21 chr4 128383528 128383670 -27246450 - B1F SINE Alu -2 147 2 6 1564 204 173 19 19 chr4 128389136 128389189 -27240931 + CT-rich Low_complexity Low_complexity 2 54 0 6 1564 316 275 12 36 chr4 128390526 128390609 -27239511 + ID4 SINE ID 3 83 0 6 1564 484 245 10 0 chr4 128390772 128390870 -27239250 - PB1D10 SINE Alu -18 99 1 6 1564 181 337 12 24 chr4 128390875 128390960 -27239160 - L2b LINE L2 -254 3121 3038 6 1564 721 82 9 9 chr4 128391246 128391357 -27238763 + (TCC)n Simple_repeat Simple_repeat 2 112 0 6 1564 1885 205 93 12 chr4 128391503 128391932 -27238188 - Lx7 LINE L1 -286 7410 6947 6 1564 2594 24 9 0 chr4 128394302 128394630 -27235490 - MTA_Mm LTR MaLR 0 396 66 6 1564 228 86 0 0 chr4 128395332 128395367 -27234753 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 6 1564 1049 135 7 0 chr4 128395706 128395854 -27234266 + B1_Mur3 SINE Alu 1 149 0 6 1564 416 341 48 87 chr4 128395891 128396159 -27233961 - MIRb SINE MIR -8 260 4 6 1564 258 251 142 9 chr4 128396951 128397074 -27233046 - MIR SINE MIR -88 180 50 6 1564 980 275 15 41 chr4 128397960 128398229 -27231891 - B4A SINE B4 0 292 31 6 1564 388 217 12 24 chr4 128399418 128399503 -27230617 + B4A SINE B4 1 84 -208 6 1564 389 63 29 68 chr4 128399504 128399607 -27230513 + (CAAA)n Simple_repeat Simple_repeat 4 102 0 6 1564 506 287 70 6 chr4 128399624 128399796 -27230324 + B4A SINE B4 108 290 -2 6 1564 238 217 0 0 chr4 128401824 128401870 -27228250 + tRNA-Ala-GCA tRNA tRNA 20 65 -10 6 1564 287 357 0 0 chr4 128402744 128402842 -27227278 - MIR SINE MIR -54 208 111 6 1564 234 343 57 43 chr4 128403329 128403469 -27226651 - L2c LINE L2 -62 3325 3184 6 1564 547 310 72 17 chr4 128403580 128403816 -27226304 + MER58B DNA MER1_type 93 341 0 6 1564 185 263 35 0 chr4 128403826 128403883 -27226237 - L2c LINE L2 -269 3118 3060 6 1564 344 239 136 8 chr4 128404358 128404476 -27225644 - MIRb SINE MIR -3 265 133 6 1564 215 79 0 26 chr4 128404776 128404815 -27225305 + (CCCCG)n Simple_repeat Simple_repeat 3 40 0 6 1564 22 35 0 0 chr4 128404906 128404935 -27225185 + GC_rich Low_complexity Low_complexity 1 29 0 6 1564 37 104 0 0 chr4 128404975 128405110 -27225010 + GC_rich Low_complexity Low_complexity 1 135 0 6 1564 23 54 0 0 chr4 128408087 128408124 -27221996 + AT_rich Low_complexity Low_complexity 1 37 0 6 1564 970 210 52 28 chr4 128408339 128408550 -27221570 - B3 SINE B2 0 216 1 6 1564 827 244 95 40 chr4 128408614 128408887 -27221233 - B4A SINE B4 0 292 5 6 1564 402 21 0 0 chr4 128409619 128409666 -27220454 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1564 1125 91 31 181 chr4 128409719 128409758 -27220362 + B2_Mm2 SINE B2 3 41 -154 6 1564 1151 61 0 58 chr4 128409758 128409914 -27220206 + B1_Mm SINE Alu 1 147 0 6 1564 1125 91 31 181 chr4 128409914 128410101 -27220019 + B2_Mm2 SINE B2 42 195 0 6 1564 501 264 475 4 chr4 128412751 128412984 -27217136 - MTEa LTR MaLR -9 370 28 6 1564 742 0 0 31 chr4 128414946 128415042 -27215078 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 6 1564 283 322 122 48 chr4 128415708 128415897 -27214223 + L3 LINE CR1 4207 4409 -80 6 1564 22 70 0 0 chr4 128416062 128416105 -27214015 + AT_rich Low_complexity Low_complexity 1 43 0 6 1564 1234 154 101 156 chr4 128416217 128416347 -27213773 + MYSERV16_I-int LTR ERVK 1099 1232 -1094 6 1564 1170 88 0 0 chr4 128416347 128416495 -27213625 - B1_Mus1 SINE Alu 0 148 1 6 1564 1234 154 101 156 chr4 128416495 128416594 -27213526 + MYSERV16_I-int LTR ERVK 1233 1286 -1040 6 1564 1063 82 0 45 chr4 128416594 128416748 -27213372 + B1_Mus1 SINE Alu 1 147 -1 6 1564 1234 154 101 156 chr4 128416748 128417015 -27213105 + MYSERV16_I-int LTR ERVK 1287 1569 -757 6 1564 1435 90 21 0 chr4 128417015 128417204 -27212916 - B2_Mm2 SINE B2 -1 194 2 6 1564 180 0 0 0 chr4 128417223 128417243 -27212877 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1564 300 157 0 39 chr4 128417258 128417325 -27212795 - B2_Mm2 SINE B2 -107 109 47 6 1564 1264 119 11 0 chr4 128417372 128417549 -27212571 - B2_Mm1t SINE B2 -14 179 1 6 1564 3388 133 118 6 chr4 128417551 128418237 -27211883 + MYSERV16_I-int LTR ERVK 1564 2326 0 6 1564 2899 118 16 5 chr4 128418237 128418673 -27211447 + BGLII_B LTR ERVK 1 441 0 6 1564 924 182 0 0 chr4 128418751 128418899 -27211221 + B1_Mur2 SINE Alu 1 148 -1 6 1564 397 269 67 0 chr4 128419107 128419226 -27210894 - RSINE1 SINE B4 -35 130 4 6 1564 465 34 0 0 chr4 128420534 128420593 -27209527 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1564 229 248 8 110 chr4 128423544 128423671 -27206449 + PB1D7 SINE Alu 5 118 -2 7 1564 205 234 35 47 chr4 128425964 128426049 -27204071 + MIRc SINE MIR 7 90 -178 7 1564 359 291 127 0 chr4 128426124 128426258 -27203862 - MLT1F LTR MaLR -128 420 270 7 1564 448 317 76 11 chr4 128426244 128426418 -27203702 - MLT1F LTR MaLR -291 304 72 7 1564 1482 160 88 3 chr4 128426427 128426721 -27203399 - MTC LTR MaLR 0 421 103 7 1564 236 307 92 23 chr4 128426736 128426866 -27203254 - MLT1F-int LTR MaLR -131 1278 1140 7 1564 635 306 108 50 chr4 128426856 128427327 -27202793 - MLT1F-int LTR MaLR -310 1179 551 7 1564 414 160 48 39 chr4 128427375 128427479 -27202641 - PB1D10 SINE Alu -4 113 9 7 1564 408 280 133 140 chr4 128427553 128427572 -27202548 - ID_B1 SINE B4 -47 245 217 7 1564 387 0 0 0 chr4 128427579 128427622 -27202498 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 7 1564 815 133 0 65 chr4 128427622 128427767 -27202353 - B1_Mur2 SINE Alu -7 142 8 7 1564 408 234 5 167 chr4 128427767 128427823 -27202297 - ID_B1 SINE B4 -73 219 49 7 1564 271 370 81 6 chr4 128427769 128427943 -27202177 - MLT1F-int LTR MaLR -979 510 324 7 1564 278 314 111 46 chr4 128428220 128428424 -27201696 - MLT1F LTR MaLR 0 560 279 7 1564 36 19 0 19 chr4 128431579 128431597 -27198523 + AT_rich Low_complexity Low_complexity 1 18 0 7 1564 698 160 74 30 chr4 128431597 128431732 -27198388 + B1_Mm SINE Alu 2 142 -5 7 1564 36 19 0 19 chr4 128431732 128431767 -27198353 + AT_rich Low_complexity Low_complexity 1 35 0 7 1564 789 186 35 25 chr4 128431826 128432028 -27198092 + B2_Mm2 SINE B2 8 214 -2 7 1564 312 172 0 0 chr4 128432036 128432094 -27198026 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1564 1457 67 6 0 chr4 128434341 128434519 -27195601 + B2_Mm1t SINE B2 1 179 -14 7 1564 283 148 18 18 chr4 128434551 128434606 -27195514 + B2_Mm2 SINE B2 47 101 -94 7 1564 379 286 173 30 chr4 128434870 128435101 -27195019 + MER33 DNA MER1_type 13 276 -48 7 1564 250 155 86 0 chr4 128437012 128437070 -27193050 - L1M5 LINE L1 -692 5432 5370 7 1564 311 197 64 26 chr4 128438184 128438262 -27191858 + ID4 SINE ID 1 81 -2 7 1564 1056 44 7 0 chr4 128439762 128439899 -27190221 + B1_Mus1 SINE Alu 11 148 0 7 1564 203 190 0 49 chr4 128439900 128439961 -27190159 + A-rich Low_complexity Low_complexity 3 60 0 7 1564 182 331 158 0 chr4 128439961 128440088 -27190032 - L2 LINE L2 -2425 994 848 7 1564 2679 151 19 10 chr4 128440098 128440581 -27189539 - RMER6A LTR ERVK 0 756 270 7 1564 5487 119 23 93 chr4 128440596 128441300 -27188820 - RLTR13D6 LTR ERVK 0 902 265 7 1564 1201 68 0 0 chr4 128441300 128441447 -27188673 - B1_Mus1 SINE Alu 0 148 2 7 1564 5487 119 23 93 chr4 128441447 128441711 -27188409 - RLTR13D6 LTR ERVK -638 264 2 7 1564 1453 131 47 0 chr4 128441731 128441967 -27188153 - ETnERV3-int LTR ERVK -33 5775 5529 7 1564 363 269 10 0 chr4 128441967 128442071 -27188049 - ETnERV3-int LTR ERVK -419 5389 5285 7 1564 2179 101 11 11 chr4 128442064 128442414 -27187706 - ETnERV2-int LTR ERVK -3490 3916 3567 7 1564 306 0 0 0 chr4 128442422 128442456 -27187664 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1564 1293 25 0 0 chr4 128442456 128442615 -27187505 - B2_Mm1a SINE B2 -33 160 2 7 1564 4189 111 25 62 chr4 128442623 128443241 -27186879 - ETnERV2-int LTR ERVK -3844 3562 2944 7 1564 1170 88 0 0 chr4 128443241 128443389 -27186731 + B1_Mus1 SINE Alu 1 148 0 7 1564 4189 111 25 62 chr4 128443389 128443579 -27186541 - ETnERV2-int LTR ERVK -4463 2943 2784 7 1564 1119 165 155 8 chr4 128443588 128443827 -27186293 - MTD LTR MaLR -115 304 31 7 1564 218 151 19 19 chr4 128443848 128443902 -27186218 + (CAA)n Simple_repeat Simple_repeat 1 54 0 7 1564 264 246 0 17 chr4 128446586 128446644 -27183476 + GA-rich Low_complexity Low_complexity 2 58 0 7 1564 191 88 0 29 chr4 128447252 128447287 -27182833 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 7 1564 281 316 52 32 chr4 128447293 128447447 -27182673 - MIR SINE MIR -27 235 79 7 1564 442 269 67 33 chr4 128447818 128447968 -27182152 + B4 SINE B4 121 275 -17 7 1564 405 0 0 0 chr4 128448452 128448497 -27181623 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1564 1275 92 40 6 chr4 128448642 128448817 -27181303 + B2_Mm2 SINE B2 1 181 -14 7 1564 370 63 63 0 chr4 128448839 128448902 -27181218 + B2_Mm1a SINE B2 127 193 0 7 1564 803 72 20 0 chr4 128448901 128449037 -27181083 + B1_Mm SINE Alu 1 149 0 7 1564 551 329 124 11 chr4 128449062 128449345 -27180775 + MTE-int LTR MaLR 2 316 -1264 7 1565 210 250 82 91 chr4 128452177 128452287 -27177833 + MIRb SINE MIR 37 145 -123 7 1565 2511 129 59 0 chr4 128452726 128453098 -27177022 + ORR1B1 LTR MaLR 1 394 0 7 1565 403 316 77 74 chr4 128453102 128453399 -27176721 + L1MC5 LINE L1 7538 7835 -126 7 1565 393 349 34 17 chr4 128453570 128453748 -27176372 + MER20 DNA MER1_type 6 186 -33 7 1565 194 250 23 0 chr4 128456081 128456125 -27173995 + MIRc SINE MIR 113 157 -111 7 1565 1189 62 7 0 chr4 128456237 128456383 -27173737 + B1_Mus1 SINE Alu 2 148 0 7 1565 1358 72 22 0 chr4 128456481 128456661 -27173459 - B2_Mm2 SINE B2 -10 185 2 7 1565 461 202 42 42 chr4 128456664 128456783 -27173337 - PB1D7 SINE Alu 0 120 2 7 1565 481 42 14 14 chr4 128457101 128457174 -27172946 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1565 240 35 0 0 chr4 128457979 128458008 -27172112 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1565 400 287 76 86 chr4 128458249 128458292 -27171828 - B3 SINE B2 -6 210 166 7 1565 282 73 0 0 chr4 128458292 128458333 -27171787 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1565 426 287 76 86 chr4 128458333 128458487 -27171633 - B3A SINE B2 -28 170 15 7 1565 493 263 35 0 chr4 128458840 128458954 -27171166 - ID_B1 SINE B4 -2 222 105 7 1565 226 331 111 82 chr4 128459001 128459054 -27171066 - B3 SINE B2 -2 214 2 7 1565 687 206 0 84 chr4 128459054 128459208 -27170912 - RSINE1 SINE B4 -22 143 3 7 1565 470 325 0 0 chr4 128459287 128459413 -27170707 + B1_Mur1 SINE Alu 1 126 -23 7 1565 359 300 119 27 chr4 128459398 128459583 -27170537 + B4A SINE B4 83 284 -8 7 1565 268 169 169 0 chr4 128459649 128459708 -27170412 + ID2 SINE ID 11 79 -4 7 1565 1572 38 0 26 chr4 128460803 128460994 -27169126 + B2_Mm2 SINE B2 1 186 -9 7 1565 508 237 0 0 chr4 128461010 128461107 -27169013 - ID_B1 SINE B4 -2 222 126 7 1565 1241 35 0 0 chr4 128461846 128461987 -27168133 + B1_Mm SINE Alu 1 141 -6 7 1565 224 30 0 29 chr4 128461990 128462024 -27168096 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1565 304 302 0 11 chr4 128462028 128462115 -27168005 + BC1_Mm scRNA scRNA 8 93 -59 7 1565 288 246 0 0 chr4 128462145 128462202 -27167918 + ID4 SINE ID 23 79 -4 7 1565 242 266 203 0 chr4 128462552 128462660 -27167460 + L2a LINE L2 3276 3426 0 7 1565 206 384 7 29 chr4 128463773 128463910 -27166210 + MER5B DNA MER1_type 15 148 -30 7 1565 210 280 80 0 chr4 128464667 128464742 -27165378 + ID4_ SINE ID 1 81 -2 7 1565 228 268 56 102 chr4 128465262 128465370 -27164750 + B1F SINE Alu 1 103 -46 7 1565 252 274 33 66 chr4 128465606 128465727 -27164393 + L1M5 LINE L1 5571 5687 -437 7 1565 24 67 0 0 chr4 128466537 128466582 -27163538 + AT_rich Low_complexity Low_complexity 1 45 0 7 1565 398 282 32 39 chr4 128469157 128469312 -27160808 - MIRc SINE MIR -102 166 13 7 1565 254 221 49 61 chr4 128471259 128471341 -27158779 + MIRb SINE MIR 38 118 -158 7 1565 188 328 59 17 chr4 128471410 128471528 -27158592 - L2c LINE L2 -267 3120 2998 7 1565 453 232 69 21 chr4 128472086 128472229 -27157891 + L2c LINE L2 3054 3214 -173 7 1565 271 364 145 6 chr4 128472282 128472448 -27157672 - MIRb SINE MIR -43 225 37 7 1565 280 261 0 0 chr4 128472609 128472674 -27157446 - MIRm SINE MIR -125 151 87 7 1565 217 167 37 0 chr4 128473233 128473287 -27156833 + GA-rich Low_complexity Low_complexity 2 57 0 7 1565 182 280 0 57 chr4 128473391 128473444 -27156676 - L2c LINE L2 -211 3176 3127 7 1565 243 88 0 0 chr4 128474022 128474056 -27156064 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 7 1565 270 408 9 40 chr4 128474283 128474510 -27155610 + L1M5 LINE L1 5451 5670 -454 7 1565 21 0 0 0 chr4 128476772 128476793 -27153327 + GC_rich Low_complexity Low_complexity 1 21 0 7 1565 183 320 0 0 chr4 128476929 128476979 -27153141 + MIR3 SINE MIR 108 157 -51 7 1565 1381 156 9 13 chr4 128477850 128478077 -27152043 - URR1A DNA MER1_type 0 226 1 7 1565 285 128 0 0 chr4 128480409 128480456 -27149664 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 7 1565 188 191 24 0 chr4 128480908 128480950 -27149170 + L3b LINE CR1 433 475 -7 7 1565 210 156 21 62 chr4 128481099 128481147 -27148973 + MIRc SINE MIR 103 148 -120 7 1565 205 224 250 0 chr4 128481371 128481447 -27148673 + MIR SINE MIR 45 139 -69 7 1565 396 0 0 0 chr4 128482327 128482371 -27147749 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1565 182 133 0 82 chr4 128482509 128482558 -27147562 + A-rich Low_complexity Low_complexity 1 45 0 7 1565 45 93 0 0 chr4 128483064 128483193 -27146927 + GC_rich Low_complexity Low_complexity 1 129 0 7 1565 33 25 0 0 chr4 128483209 128483249 -27146871 + GC_rich Low_complexity Low_complexity 1 40 0 7 1565 197 65 0 31 chr4 128483340 128483372 -27146748 + (CGG)n Simple_repeat Simple_repeat 1 31 0 7 1565 59 104 0 0 chr4 128483438 128483658 -27146462 + GC_rich Low_complexity Low_complexity 1 220 0 7 1565 28 29 0 0 chr4 128483696 128483731 -27146389 + GC_rich Low_complexity Low_complexity 1 35 0 7 1565 27 73 0 0 chr4 128483752 128483807 -27146313 + GC_rich Low_complexity Low_complexity 1 55 0 7 1565 25 31 0 0 chr4 128483829 128483861 -27146259 + GC_rich Low_complexity Low_complexity 1 32 0 7 1565 187 321 0 24 chr4 128484232 128484315 -27145805 + L2 LINE L2 2552 2632 -787 7 1565 215 347 10 21 chr4 128484515 128484612 -27145508 - L2a LINE L2 -44 3382 3287 7 1565 731 222 45 45 chr4 128485094 128485292 -27144828 + B3A SINE B2 1 198 0 7 1565 397 286 110 8 chr4 128485325 128485452 -27144668 + B3A SINE B2 1 140 -58 7 1565 764 172 172 0 chr4 128485452 128485575 -27144545 + LSU-rRNA_Hsa rRNA rRNA 1341 1472 -3563 7 1565 189 0 0 0 chr4 128485575 128485596 -27144524 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 8 1565 764 172 172 0 chr4 128485596 128485641 -27144479 + LSU-rRNA_Hsa rRNA rRNA 1473 1536 -3499 7 1565 4965 98 7 3 chr4 128485641 128486377 -27143743 + ORR1A2-int LTR MaLR 1225 1963 0 8 1565 2216 89 13 0 chr4 128486377 128486690 -27143430 + ORR1A2 LTR MaLR 1 317 -10 8 1565 468 35 0 0 chr4 128486704 128486762 -27143358 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1565 659 250 115 0 chr4 128486766 128486958 -27143162 - B3 SINE B2 -2 214 1 8 1565 770 284 98 39 chr4 128486958 128487084 -27143036 + L1MC3 LINE L1 7304 7460 -325 8 1565 180 0 0 0 chr4 128487084 128487104 -27143016 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1565 770 284 98 39 chr4 128487104 128487416 -27142704 + L1MC3 LINE L1 7461 7768 -17 8 1565 393 191 142 160 chr4 128487420 128487526 -27142594 + B1F2 SINE Alu 1 133 -16 8 1565 261 222 19 0 chr4 128487527 128487581 -27142539 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1565 341 100 0 0 chr4 128487582 128487632 -27142488 + HAL1-3A_ME LINE L1 1975 2024 -834 8 1565 713 227 8 0 chr4 128488289 128488421 -27141699 - B1_Mur1 SINE Alu -16 133 1 8 1565 437 306 99 19 chr4 128488579 128488881 -27141239 - MLT1J1 LTR MaLR -18 393 64 8 1565 467 288 70 47 chr4 128489568 128489783 -27140337 + RMER15 LTR ERVL 342 561 -14 8 1565 234 356 8 17 chr4 128489841 128489958 -27140162 - L2a LINE L2 -642 2777 2662 7 1565 272 284 37 0 chr4 128490076 128490157 -27139963 - RSINE1 SINE B4 0 165 82 8 1565 228 341 62 83 chr4 128490164 128490306 -27139814 - B4A SINE B4 -117 175 37 8 1565 1128 278 58 25 chr4 128490306 128490631 -27139489 - MT2A LTR ERVL 0 533 198 8 1565 442 220 18 190 chr4 128490611 128490774 -27139346 - MTE2a LTR MaLR -244 135 1 8 1565 255 342 45 39 chr4 128491394 128491549 -27138571 + LTR85a LTR Gypsy? 241 396 -306 8 1565 23 0 0 0 chr4 128491974 128491997 -27138123 + GC_rich Low_complexity Low_complexity 1 23 0 8 1565 240 239 82 41 chr4 128492832 128492954 -27137166 + MIR SINE MIR 19 145 -63 8 1565 360 293 51 68 chr4 128494151 128494327 -27135793 - MLT1B LTR MaLR 0 390 202 8 1565 410 299 86 0 chr4 128494488 128494605 -27135515 + RSINE1 SINE B4 5 131 -34 8 1565 261 310 25 49 chr4 128494695 128494706 -27135414 - MLT1B LTR MaLR -343 124 114 8 1565 1191 96 55 27 chr4 128494706 128494889 -27135231 + B2_Mm2 SINE B2 1 188 -7 8 1565 287 298 4 53 chr4 128494889 128494999 -27135121 - MLT1B LTR MaLR -354 113 6 8 1565 319 370 94 54 chr4 128495137 128495689 -27134431 - L1MC4 LINE L1 -8 8034 7461 8 1565 250 227 80 18 chr4 128495724 128495836 -27134284 - MER97b DNA MER1_type? -16 1037 919 8 1565 237 231 0 19 chr4 128495916 128495969 -27134151 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1565 381 336 28 71 chr4 128496011 128496244 -27133876 - B4A SINE B4 -58 234 5 8 1565 23 0 0 0 chr4 128496449 128496472 -27133648 + AT_rich Low_complexity Low_complexity 1 23 0 8 1565 569 243 36 14 chr4 128496575 128496713 -27133407 + B1F SINE Alu 8 148 -1 8 1565 201 222 0 22 chr4 128496730 128496776 -27133344 + (TTA)n Simple_repeat Simple_repeat 1 45 0 8 1565 227 31 0 30 chr4 128496789 128496822 -27133298 + (TTA)n Simple_repeat Simple_repeat 3 34 0 8 1565 294 294 0 23 chr4 128496961 128497048 -27133072 + PB1D10 SINE Alu 32 116 -1 8 1565 743 273 35 87 chr4 128497056 128497345 -27132775 + B4A SINE B4 19 292 0 8 1565 236 258 10 0 chr4 128497345 128497442 -27132678 + (CA)n Simple_repeat Simple_repeat 1 98 0 8 1565 249 33 0 0 chr4 128497543 128497573 -27132547 + (CAA)n Simple_repeat Simple_repeat 1 30 0 8 1565 585 252 47 7 chr4 128497580 128497728 -27132392 + RSINE1 SINE B4 12 165 0 8 1565 222 301 107 67 chr4 128497728 128497758 -27132362 + B2_Mm2 SINE B2 11 195 0 8 1565 249 237 0 17 chr4 128498633 128498693 -27131427 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 8 1565 244 336 25 42 chr4 128498693 128498811 -27131309 - PB1D10 SINE Alu -1 116 1 8 1565 278 345 12 0 chr4 128499140 128499224 -27130896 + B4A SINE B4 2 86 -206 8 1565 280 225 84 0 chr4 128499270 128499341 -27130779 + B4A SINE B4 191 267 -25 8 1565 279 0 0 0 chr4 128499344 128499375 -27130745 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1565 229 295 147 35 chr4 128499464 128499580 -27130540 - L1MC4 LINE L1 -616 7426 7298 8 1565 230 254 42 14 chr4 128499719 128499791 -27130329 - PB1D10 SINE Alu -7 110 37 8 1565 673 261 7 0 chr4 128500060 128500198 -27129922 - RSINE1 SINE B4 -5 160 22 1 1565 577 304 19 0 chr4 128500209 128500234 -27129886 - B4A SINE B4 -47 245 221 2 1565 459 0 0 0 chr4 128500234 128500285 -27129835 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1565 1032 220 4 69 chr4 128500285 128500517 -27129603 - B4 SINE B4 -72 220 2 2 1565 320 288 8 25 chr4 128500517 128500638 -27129482 - L1MC4 LINE L1 -1028 7014 6896 4 1565 3261 44 39 0 chr4 128500922 128501307 -27128813 - MTB LTR MaLR 0 400 1 5 1565 383 368 48 5 chr4 128501393 128501579 -27128541 - MLT1B LTR MaLR -2 388 195 6 1565 880 144 28 35 chr4 128501937 128502081 -27128039 - B1_Mus1 SINE Alu -5 143 1 7 1565 375 312 90 37 chr4 128502198 128502512 -27127608 + MLT1A1 LTR MaLR 2 369 -39 8 1565 896 223 50 43 chr4 128502559 128502817 -27127303 + Lx7 LINE L1 548 807 -6921 9 1565 1315 99 0 6 chr4 128502817 128502999 -27127121 + B2_Mm2 SINE B2 1 181 -14 1 1565 6435 172 73 38 chr4 128503003 128503151 -27126969 + Lx7 LINE L1 1447 1596 -4284 9 1565 1189 49 14 7 chr4 128503151 128503295 -27126825 + B1_Mm SINE Alu 2 146 -1 1 1565 1404 51 0 0 chr4 128503299 128503476 -27126644 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 1 1565 6435 172 73 38 chr4 128503476 128504393 -27125727 + Lx7 LINE L1 1597 2561 -3319 9 1565 278 50 25 0 chr4 128504393 128504433 -27125687 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1565 6435 172 73 38 chr4 128504433 128504915 -27125205 + Lx7 LINE L1 2562 3054 -2826 9 1565 198 0 0 0 chr4 128505320 128505342 -27124778 + (CTG)n Simple_repeat Simple_repeat 2 23 0 1 1565 2738 236 42 22 chr4 128505570 128506243 -27123877 + RMER1C Other Other 638 1323 -19 1 1565 1088 116 30 99 chr4 128506266 128506467 -27123653 + ORR1B1 LTR MaLR 41 227 -167 1 1565 5671 106 22 87 chr4 128506457 128507470 -27122650 + MTB-int LTR MaLR 151 1097 -1 1 1565 3198 54 26 0 chr4 128507471 128507861 -27122259 + MTB LTR MaLR 1 400 0 1 1565 11841 161 40 47 chr4 128507861 128509242 -27120878 + Lx7 LINE L1 3391 4752 -1128 9 1565 1310 27 0 0 chr4 128509242 128509389 -27120731 + B1_Mm SINE Alu 1 147 0 1 1565 11841 161 40 47 chr4 128509389 128509485 -27120635 + Lx7 LINE L1 4753 4827 -1053 9 1565 286 23 47 0 chr4 128509485 128509528 -27120592 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1565 11841 161 40 47 chr4 128509528 128510545 -27119575 + Lx7 LINE L1 4828 5870 -10 9 1565 2656 75 58 21 chr4 128510563 128510944 -27119176 + MTB_Mm LTR MaLR 2 396 -11 2 1565 1166 133 20 10 chr4 128510945 128511142 -27118978 - L1_Mur3 LINE L1 -412 5468 5270 2 1565 1903 226 48 19 chr4 128511159 128511637 -27118483 + Lx7 LINE L1 5894 6385 -1311 9 1565 3276 210 30 58 chr4 128511621 128512462 -27117658 + Lx7 LINE L1 6874 7690 -6 9 1565 231 262 113 19 chr4 128512670 128512806 -27117314 - MLT1J2 LTR MaLR -215 233 97 2 1565 684 24 0 0 chr4 128513001 128513083 -27117037 + (TTC)n Simple_repeat Simple_repeat 3 84 0 2 1565 933 209 42 65 chr4 128513135 128513350 -27116770 + B3 SINE B2 7 216 0 2 1565 292 266 101 0 chr4 128513542 128513621 -27116499 - PB1D10 SINE Alu -30 87 1 2 1565 231 125 0 0 chr4 128513652 128513692 -27116428 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1565 242 250 0 19 chr4 128513722 128513775 -27116345 - B4A SINE B4 -55 237 186 2 1565 581 206 183 29 chr4 128513848 128514023 -27116097 - B3 SINE B2 0 216 15 2 1565 381 22 0 0 chr4 128514099 128514145 -27115975 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1565 1222 62 0 0 chr4 128514295 128514441 -27115679 - B1_Mus2 SINE Alu -1 146 1 3 1565 571 243 0 9 chr4 128514705 128514817 -27115303 - PB1D10 SINE Alu 0 117 7 3 1565 534 82 0 0 chr4 128514830 128514915 -27115205 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1565 248 222 0 100 chr4 128514925 128514985 -27115135 - ZP3AR Satellite Satellite -119 93 40 3 1565 236 323 58 29 chr4 128515188 128515325 -27114795 - MIR SINE MIR -85 177 37 3 1565 1530 253 45 26 chr4 128515470 128515932 -27114188 + MER31A LTR ERV1 1 471 -14 3 1565 1614 119 138 6 chr4 128516153 128516507 -27113613 - RMER17C LTR ERVK 0 410 10 3 1565 429 283 9 9 chr4 128516509 128516616 -27113504 + MTEa LTR MaLR 18 124 -255 3 1565 471 323 41 51 chr4 128516725 128516921 -27113199 + MT2A LTR ERVL 268 461 -72 3 1565 318 250 58 0 chr4 128517796 128517901 -27112219 - MIRb SINE MIR -90 178 67 3 1565 185 0 0 39 chr4 128518402 128518428 -27111692 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 4 1565 1124 273 73 15 chr4 128518830 128519004 -27111116 + L1MA4 LINE L1 5573 5767 -533 4 1565 2108 152 104 13 chr4 128519004 128519390 -27110730 + MTC LTR MaLR 1 421 0 4 1565 1124 273 73 15 chr4 128519390 128519627 -27110493 + L1MA4 LINE L1 5768 6008 -292 4 1565 729 316 50 15 chr4 128520063 128520323 -27109797 + B4A SINE B4 1 269 -23 4 1565 261 0 0 0 chr4 128520323 128520352 -27109768 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1565 432 0 0 0 chr4 128520352 128520399 -27109721 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1565 945 101 10 27 chr4 128520619 128520916 -27109204 + (TG)n Simple_repeat Simple_repeat 1 291 0 4 1565 943 243 120 41 chr4 128520916 128521182 -27108938 - ORR1E LTR MaLR -72 287 1 4 1565 278 262 0 81 chr4 128521297 128521384 -27108736 - RSINE1 SINE B4 -45 120 41 4 1565 891 231 10 5 chr4 128521393 128521589 -27108531 - B4 SINE B4 -95 197 1 4 1565 308 331 92 13 chr4 128521596 128521749 -27108371 + MIRb SINE MIR 95 259 -9 5 1565 969 284 45 52 chr4 128522515 128522801 -27107319 + B4 SINE B4 2 285 -7 5 1565 22 35 0 0 chr4 128522894 128522923 -27107197 + AT_rich Low_complexity Low_complexity 1 29 0 5 1565 620 216 22 36 chr4 128523430 128523569 -27106551 - RSINE1 SINE B4 -19 146 10 5 1565 197 331 150 14 chr4 128524050 128524197 -27105923 - L2 LINE L2 -555 2864 2698 5 1565 1179 245 77 65 chr4 128524320 128524892 -27105228 - L1_Rod LINE L1 -4185 1662 1081 5 1565 1720 21 0 0 chr4 128524892 128525084 -27105036 - B2_Mm1a SINE B2 0 193 2 5 1565 993 256 47 124 chr4 128525084 128525283 -27104837 - L1_Rod LINE L1 -6528 1080 900 5 1565 1111 191 27 50 chr4 128525460 128525681 -27104439 + B3 SINE B2 1 216 0 5 1565 553 113 123 57 chr4 128525698 128525820 -27104300 + B3 SINE B2 1 130 -86 5 1565 333 47 0 0 chr4 128525825 128525868 -27104252 + (CATA)n Simple_repeat Simple_repeat 4 46 0 5 1565 218 179 0 13 chr4 128525889 128525910 -27104210 + A-rich Low_complexity Low_complexity 2 22 0 6 1565 912 148 0 32 chr4 128525910 128526064 -27104056 + B1_Mur3 SINE Alu 1 149 0 6 1565 218 179 0 13 chr4 128526064 128526121 -27103999 + A-rich Low_complexity Low_complexity 23 78 0 6 1565 235 345 147 40 chr4 128526379 128526678 -27103442 - L2 LINE L2 -785 2634 2304 5 1565 613 234 31 8 chr4 128526681 128526810 -27103310 + RSINE1 SINE B4 2 133 -32 6 1565 255 31 0 0 chr4 128526810 128526842 -27103278 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1565 427 36 0 0 chr4 128527102 128527157 -27102963 + B1_Mus2 SINE Alu 1 55 -92 6 1565 307 273 13 0 chr4 128527551 128527628 -27102492 - ID4 SINE ID -3 80 3 6 1565 666 0 0 0 chr4 128527643 128527717 -27102403 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 6 1565 420 235 58 10 chr4 128527720 128527823 -27102297 - B1F SINE Alu -7 142 35 6 1565 822 129 0 0 chr4 128527982 128528122 -27101998 + (TG)n Simple_repeat Simple_repeat 1 140 0 6 1565 471 219 0 9 chr4 128528245 128528351 -27101769 + B1F2 SINE Alu 40 144 -5 7 1565 412 275 75 41 chr4 128528559 128528799 -27101321 - L1MEg LINE L1 -5124 1101 875 7 1565 300 53 0 0 chr4 128528825 128528863 -27101257 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 7 1565 1206 62 0 0 chr4 128528863 128529008 -27101112 - B1_Mus2 SINE Alu -2 145 1 7 1565 301 336 81 20 chr4 128529039 128529126 -27100994 + RSINE1 SINE B4 3 92 -73 7 1565 1225 189 5 5 chr4 128529126 128529339 -27100781 + B3 SINE B2 1 213 -3 7 1565 301 336 81 20 chr4 128529339 128529400 -27100720 + RSINE1 SINE B4 93 159 -6 7 1565 256 260 34 53 chr4 128529569 128529713 -27100407 - MTEa LTR MaLR -36 343 199 7 1565 345 316 13 99 chr4 128529823 128529974 -27100146 - MTEa LTR MaLR -240 139 2 7 1565 921 267 84 29 chr4 128529977 128530251 -27099869 + B4A SINE B4 4 292 0 7 1565 396 0 0 0 chr4 128530258 128530302 -27099818 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1565 276 361 89 51 chr4 128530811 128531131 -27098989 - L2 LINE L2 -518 2901 2568 7 1565 1270 48 0 0 chr4 128531131 128531278 -27098842 + B1_Mus2 SINE Alu 1 147 0 8 1565 276 361 89 51 chr4 128531278 128531386 -27098734 - L2 LINE L2 -852 2567 2457 7 1565 293 250 12 70 chr4 128531415 128531501 -27098619 - MLT1K LTR MaLR -1 594 514 8 1565 309 170 0 0 chr4 128531593 128531646 -27098474 - ORR1D2 LTR MaLR -2 368 316 8 1565 267 152 0 0 chr4 128531656 128531702 -27098418 + (CAT)n Simple_repeat Simple_repeat 2 47 0 8 1565 557 171 76 0 chr4 128531702 128531807 -27098313 - PB1D9 SINE Alu -3 117 5 8 1565 647 267 18 35 chr4 128531804 128531834 -27098286 + MTEb LTR MaLR 211 236 -143 8 1565 2589 90 79 3 chr4 128531834 128532200 -27097920 - ORR1B1 LTR MaLR 0 394 1 8 1565 647 267 18 35 chr4 128532200 128532340 -27097780 + MTEb LTR MaLR 237 378 -1 8 1565 200 343 103 51 chr4 128532444 128532619 -27097501 + MIRb SINE MIR 9 192 -76 8 1565 562 172 113 38 chr4 128532630 128532763 -27097357 + B1_Mus2 SINE Alu 2 144 -3 8 1565 378 0 0 0 chr4 128532769 128532811 -27097309 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1565 1578 235 105 3 chr4 128533411 128533791 -27096329 + MTD LTR MaLR 1 419 0 9 1565 1444 32 42 26 chr4 128533956 128534148 -27095972 - B2_Mm2 SINE B2 0 195 1 9 1565 1448 28 6 0 chr4 128535362 128535539 -27094581 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 9 1565 555 16 0 0 chr4 128535548 128535612 -27094508 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1565 337 239 10 93 chr4 128535785 128535882 -27094238 + B4A SINE B4 81 169 -123 9 1565 527 184 61 0 chr4 128535812 128535910 -27094210 + PB1D9 SINE Alu 15 118 -2 9 1565 214 278 0 27 chr4 128535953 128536027 -27094093 + CT-rich Low_complexity Low_complexity 1 72 0 9 1565 315 0 0 0 chr4 128536032 128536067 -27094053 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1565 238 167 0 0 chr4 128536083 128536119 -27094001 + B1F2 SINE Alu 30 65 -84 9 1565 857 237 11 0 chr4 128536189 128536366 -27093754 + B3A SINE B2 2 180 -18 9 1565 297 209 54 62 chr4 128536438 128536550 -27093570 + Lx8 LINE L1 7353 7463 -10 1 1565 507 323 31 0 chr4 128536573 128536703 -27093417 + RSINE1 SINE B4 3 136 -29 1 1565 240 35 0 0 chr4 128536709 128536738 -27093382 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1565 321 216 0 75 chr4 128536838 128536857 -27093263 + B4A SINE B4 73 85 -207 1 1565 471 225 53 18 chr4 128536857 128536970 -27093150 + PB1D10 SINE Alu 1 117 0 1 1565 326 247 26 0 chr4 128537031 128537108 -27093012 - L1MEc LINE L1 -3851 2468 2390 1 1565 258 188 2 72 chr4 128537143 128537233 -27092887 - L1MEc LINE L1 -4034 2381 2300 1 1565 634 328 38 11 chr4 128537335 128537597 -27092523 - B4A SINE B4 -23 269 1 1 1565 353 251 251 0 chr4 128537602 128537777 -27092343 - L1MEc LINE L1 -4135 2265 2047 1 1565 670 157 34 68 chr4 128537784 128537906 -27092214 + B3 SINE B2 35 152 -46 1 1565 342 0 0 0 chr4 128537906 128537944 -27092176 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1565 556 238 42 84 chr4 128537944 128537965 -27092155 + B3A SINE B2 153 172 -26 1 1565 195 146 0 0 chr4 128537967 128538008 -27092112 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1565 261 291 105 25 chr4 128538147 128538309 -27091811 - L1MEc LINE L1 -4482 1933 1759 1 1565 380 251 104 42 chr4 128538403 128538644 -27091476 - L1MEc LINE L1 -5545 855 600 1 1565 336 265 40 10 chr4 128538718 128538817 -27091303 - L1MEc LINE L1 -6037 363 262 1 1565 257 224 29 15 chr4 128538941 128539009 -27091111 - L1MEc LINE L1 -6299 101 33 1 1565 3682 161 89 121 chr4 128539035 128540035 -27090085 - RMER1A Other Other -10 1020 53 1 1565 364 354 104 37 chr4 128540204 128540592 -27089528 - L1MEg LINE L1 -4725 1517 1166 1 1565 849 205 132 0 chr4 128540636 128540826 -27089294 - B3 SINE B2 -1 215 1 1 1565 205 219 0 24 chr4 128540897 128540939 -27089181 - MIR SINE MIR -115 147 107 1 1565 762 221 106 20 chr4 128541189 128541388 -27088732 + B3 SINE B2 1 216 0 1 1565 211 312 103 10 chr4 128541397 128541494 -27088626 - MIR SINE MIR -155 107 2 1 1565 1226 48 0 0 chr4 128541619 128541766 -27088354 + B1_Mus2 SINE Alu 1 147 0 1 1565 468 0 0 0 chr4 128541844 128541896 -27088224 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1565 660 67 0 0 chr4 128542053 128542143 -27087977 + (TATG)n Simple_repeat Simple_repeat 2 91 0 1 1565 1298 20 0 13 chr4 128542144 128542293 -27087827 - B1_Mus1 SINE Alu -1 147 1 1 1565 566 268 103 69 chr4 128543282 128543505 -27086615 + L1M2 LINE L1 5487 5727 -570 1 1565 793 116 62 55 chr4 128543505 128543651 -27086469 + B1_Mus2 SINE Alu 1 147 0 1 1565 566 268 103 69 chr4 128543651 128543688 -27086432 + L1M2 LINE L1 5728 5756 -541 1 1565 257 328 104 62 chr4 128543838 128544176 -27085944 + LTR16B1 LTR ERVL 35 386 -94 1 1565 243 0 0 0 chr4 128544275 128544302 -27085818 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1565 395 267 40 127 chr4 128544597 128544693 -27085427 + B1F1 SINE Alu 12 96 -53 1 1565 788 224 23 127 chr4 128544693 128544857 -27085263 + B3A SINE B2 2 160 -38 1 1565 297 0 0 0 chr4 128544857 128544890 -27085230 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1565 788 224 23 127 chr4 128544890 128544945 -27085175 + B3A SINE B2 161 198 0 1 1565 395 267 40 127 chr4 128544945 128544998 -27085122 + B1F1 SINE Alu 97 148 -1 1 1565 265 109 0 35 chr4 128545127 128545184 -27084936 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1565 1226 55 0 7 chr4 128545241 128545388 -27084732 + B1_Mus2 SINE Alu 2 147 0 1 1565 186 71 0 0 chr4 128545390 128545418 -27084702 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1565 447 19 0 0 chr4 128545419 128545471 -27084649 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1565 417 175 280 34 chr4 128547110 128547228 -27082892 + B1_Mur2 SINE Alu 2 148 -1 1 1565 468 338 35 0 chr4 128547351 128547496 -27082624 + RSINE1 SINE B4 16 165 0 1 1565 250 341 22 11 chr4 128547766 128547855 -27082265 + LTR16C LTR ERVL 191 280 -209 1 1565 23 0 0 0 chr4 128547920 128547943 -27082177 + GC_rich Low_complexity Low_complexity 1 23 0 1 1565 478 273 65 32 chr4 128548040 128548195 -27081925 + RSINE1 SINE B4 3 162 -3 1 1565 265 297 60 119 chr4 128548215 128548349 -27081771 + MT2B LTR ERVL 153 278 -323 1 1565 840 163 0 14 chr4 128548233 128548376 -27081744 + B1_Mus1 SINE Alu 8 148 0 1 1565 1153 212 5 24 chr4 128548402 128548614 -27081506 + B3 SINE B2 4 211 -5 1 1565 23 0 0 0 chr4 128548617 128548640 -27081480 + AT_rich Low_complexity Low_complexity 1 23 0 1 1565 2805 113 53 29 chr4 128548720 128548826 -27081294 - RMER4A LTR ERVK 0 466 347 1 1565 396 0 0 0 chr4 128548826 128548870 -27081250 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1565 2805 113 53 29 chr4 128548870 128549218 -27080902 - RMER4A LTR ERVK -120 346 1 1 1565 715 258 26 31 chr4 128549815 128549970 -27080150 + B3A SINE B2 2 158 -40 1 1565 387 0 0 0 chr4 128549970 128550013 -27080107 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1565 715 258 26 31 chr4 128550013 128550049 -27080071 + B3A SINE B2 159 192 -6 1 1565 703 123 16 0 chr4 128550049 128550171 -27079949 + (TC)n Simple_repeat Simple_repeat 1 124 0 1 1565 619 217 232 28 chr4 128550357 128550642 -27079478 - LTR50 LTR ERVL -452 343 1 1 1565 745 243 93 11 chr4 128550750 128550933 -27079187 + B3 SINE B2 1 198 -18 1 1565 480 35 0 0 chr4 128550933 128550991 -27079129 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 1 1565 526 241 8 33 chr4 128551315 128551435 -27078685 - ID_B1 SINE B4 -62 162 46 1 1565 274 248 116 33 chr4 128551641 128551762 -27078358 - RMER15 LTR ERVL 0 575 445 1 1565 342 100 0 0 chr4 128551771 128551831 -27078289 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1565 753 294 73 17 chr4 128551872 128552104 -27078016 - B4A SINE B4 -24 268 24 1 1565 946 250 73 44 chr4 128552306 128552795 -27077325 - RLTR11A2 LTR ERVK 0 527 1 1 1565 316 317 68 14 chr4 128553988 128554135 -27075985 + MERVL_2A-int LTR ERVL 4172 4326 -1435 1 1565 386 294 153 55 chr4 128555174 128555459 -27074661 + LTR16E1 LTR ERVL 160 537 -1 1 1565 604 124 53 12 chr4 128555518 128555689 -27074431 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1565 514 135 42 21 chr4 128555704 128555999 -27074121 + (TG)n Simple_repeat Simple_repeat 1 301 0 1 1565 214 371 91 13 chr4 128556202 128556450 -27073670 - L2 LINE L2 -1516 1903 1638 1 1565 234 341 47 16 chr4 128556872 128557000 -27073120 + MIRb SINE MIR 103 234 -34 1 1565 961 228 20 0 chr4 128557132 128557329 -27072791 + MER82 DNA MER2_type 1 201 -452 1 1565 575 281 85 21 chr4 128557367 128557603 -27072517 - MER2 DNA MER2_type -51 294 44 1 1565 279 291 63 0 chr4 128557601 128557680 -27072440 + MER82 DNA MER2_type 562 645 -8 1 1565 282 322 92 63 chr4 128558046 128558312 -27071808 - MLT1L LTR MaLR -97 351 60 1 1565 360 341 111 12 chr4 128558986 128559158 -27070962 - MLT1L LTR MaLR -415 195 7 1 1565 383 264 395 0 chr4 128559421 128559635 -27070485 + RMER15 LTR ERVL 275 572 -3 1 1565 225 0 0 0 chr4 128560027 128560052 -27070068 + (CAGAA)n Simple_repeat Simple_repeat 4 28 0 1 1565 213 65 0 0 chr4 128560103 128560134 -27069986 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1565 333 82 0 0 chr4 128560227 128560276 -27069844 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1565 31 58 0 0 chr4 128560744 128560796 -27069324 + GC_rich Low_complexity Low_complexity 1 52 0 1 1565 23 33 0 0 chr4 128561358 128561388 -27068732 + GC_rich Low_complexity Low_complexity 1 30 0 1 1565 309 26 0 0 chr4 128562711 128562749 -27067371 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1565 799 185 126 6 chr4 128562847 128563021 -27067099 - B3 SINE B2 -5 211 17 1 1565 243 0 0 0 chr4 128563385 128563412 -27066708 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 1565 324 282 58 25 chr4 128564158 128564278 -27065842 + MIRb SINE MIR 5 128 -140 1 1565 216 356 0 0 chr4 128564635 128564694 -27065426 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 1 1565 180 196 20 80 chr4 128566489 128566539 -27063581 - MIRb SINE MIR -116 152 106 1 1565 457 346 0 26 chr4 128567594 128567784 -27062336 - RMER15 LTR ERVL -50 525 341 1 1565 278 341 23 8 chr4 128568558 128568688 -27061432 + MIR3 SINE MIR 66 197 -11 1 1565 457 258 68 52 chr4 128568785 128568977 -27061143 - MIRb SINE MIR -32 236 42 1 1565 283 298 73 21 chr4 128569241 128569337 -27060783 - L2c LINE L2 -38 3349 3238 1 1565 667 233 220 6 chr4 128569343 128569520 -27060600 + ID_B1 SINE B4 1 215 -9 1 1565 732 319 5 24 chr4 128569704 128569913 -27060207 + MER3 DNA MER1_type 5 209 0 1 1565 636 169 20 7 chr4 128570981 128571130 -27058990 + CT-rich Low_complexity Low_complexity 4 154 0 1 1565 1067 119 6 0 chr4 128571147 128571323 -27058797 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1 1565 226 333 97 21 chr4 128571633 128571777 -27058343 + L2a LINE L2 3266 3420 -6 1 1565 307 196 0 0 chr4 128571777 128571833 -27058287 + B1_Mus2 SINE Alu 83 138 -9 1 1565 221 302 80 23 chr4 128572157 128572245 -27057875 - L2a LINE L2 0 3426 3334 1 1565 469 289 82 10 chr4 128572502 128572698 -27057422 - MER96B DNA hAT -47 370 161 1 1565 921 221 39 0 chr4 128572845 128573053 -27057067 - B3 SINE B2 0 216 1 1 1565 266 0 0 29 chr4 128573061 128573096 -27057024 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 1565 871 275 28 5 chr4 128573096 128573308 -27056812 - B4A SINE B4 -75 217 1 1 1565 640 257 7 7 chr4 128573716 128573865 -27056255 + B1F SINE Alu 1 149 0 1 1565 483 259 9 0 chr4 128574600 128574708 -27055412 + PB1D10 SINE Alu 1 109 -8 1 1565 294 224 0 0 chr4 128574804 128574862 -27055258 + PB1D10 SINE Alu 52 109 -8 1 1565 202 267 0 48 chr4 128575462 128575525 -27054595 + C-rich Low_complexity Low_complexity 3 62 0 1 1565 726 227 35 0 chr4 128578242 128578383 -27051737 + B1F SINE Alu 1 146 -3 1 1565 867 162 15 0 chr4 128578600 128578736 -27051384 - B1_Mus1 SINE Alu -10 138 1 1 1565 369 0 0 0 chr4 128578781 128578822 -27051298 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1565 1186 195 0 26 chr4 128578891 128579123 -27050997 - B4 SINE B4 -66 226 1 1 1565 307 340 123 7 chr4 128579178 128579332 -27050788 - MIRb SINE MIR -69 199 28 1 1565 252 0 0 0 chr4 128579423 128579451 -27050669 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1565 374 335 64 13 chr4 128581241 128581398 -27048722 - MER20 DNA MER1_type -52 167 3 1 1566 269 272 49 0 chr4 128582199 128582280 -27047840 + MIRb SINE MIR 99 183 -85 1 1566 1479 19 0 0 chr4 128583003 128583218 -27046902 + (CCCCAG)n Simple_repeat Simple_repeat 1 215 0 1 1566 1193 42 21 0 chr4 128583432 128583575 -27046545 + B1_Mus1 SINE Alu 1 146 -2 2 1566 630 37 0 0 chr4 128583836 128583917 -27046203 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1566 269 320 62 93 chr4 128585001 128585163 -27044957 + MIR3 SINE MIR 13 169 -39 2 1566 21 36 0 0 chr4 128585183 128585211 -27044909 + AT_rich Low_complexity Low_complexity 1 28 0 2 1566 911 265 9 0 chr4 128585313 128585524 -27044596 - ID_B1 SINE B4 -5 219 7 2 1566 558 319 83 47 chr4 128585652 128585928 -27044192 - MER20B DNA MER1_type -351 432 147 2 1566 226 200 0 0 chr4 128585948 128585988 -27044132 - MER20B DNA MER1_type -727 56 17 2 1566 243 327 9 61 chr4 128587953 128588067 -27042053 - LTR33B LTR ERVL -337 166 59 2 1566 3278 21 45 0 chr4 128588824 128589203 -27040917 - MTA_Mm LTR MaLR 0 396 1 2 1566 180 344 0 15 chr4 128589274 128589339 -27040781 + MIRc SINE MIR 92 155 -113 2 1566 381 43 0 0 chr4 128589852 128589899 -27040221 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1566 3398 13 39 0 chr4 128589932 128590313 -27039807 + MTA_Mm LTR MaLR 1 396 0 2 1566 297 233 113 28 chr4 128590785 128590891 -27039229 + MIRb SINE MIR 88 202 -66 2 1566 488 289 7 34 chr4 128591481 128591628 -27038492 + B4A SINE B4 4 146 -146 2 1566 218 219 0 15 chr4 128591721 128591786 -27038334 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1566 227 311 56 0 chr4 128592061 128592151 -27037969 - MIR SINE MIR -81 127 33 2 1566 1359 91 6 0 chr4 128593251 128593427 -27036693 + B2_Mm1a SINE B2 2 178 -15 2 1566 281 26 26 0 chr4 128593427 128593465 -27036655 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1566 1118 113 177 22 chr4 128593468 128593649 -27036471 + B3 SINE B2 1 209 -7 2 1566 550 308 28 47 chr4 128594036 128594382 -27035738 + RSINE1 SINE B4 1 269 -23 2 1566 279 0 0 0 chr4 128594382 128594413 -27035707 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1566 290 291 11 11 chr4 128595219 128595306 -27034814 - MIR SINE MIR -64 198 112 2 1566 299 318 50 8 chr4 128595383 128595549 -27034571 - MIR3 SINE MIR -89 179 10 2 1566 477 0 0 0 chr4 128596116 128596169 -27033951 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1566 1150 19 174 31 chr4 128596170 128596331 -27033789 - B2_Mm1a SINE B2 -9 184 1 2 1566 1033 249 172 11 chr4 128596340 128596689 -27033431 - MTD LTR MaLR -14 405 1 2 1566 198 91 0 0 chr4 128596797 128596830 -27033290 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 1566 7564 6 4 5 chr4 128596853 128597676 -27032444 + RLTR13B2 LTR ERVK 1 822 0 2 1566 435 52 0 0 chr4 128597692 128597750 -27032370 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1566 414 0 0 0 chr4 128598523 128598569 -27031551 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1566 761 234 0 14 chr4 128599434 128599577 -27030543 - B1_Mur3 SINE Alu -6 143 3 2 1566 932 71 14 0 chr4 128599631 128599771 -27030349 - B2_Mm2 SINE B2 -3 192 51 2 1566 308 336 31 0 chr4 128599784 128599912 -27030208 - L2 LINE L2 -2168 1251 1120 2 1566 643 342 73 44 chr4 128599928 128600311 -27029809 + MLT1I LTR MaLR 16 409 -2 2 1566 449 353 21 17 chr4 128600634 128600849 -27029271 - MLT1F2 LTR MaLR -353 216 7 2 1566 182 265 94 24 chr4 128601153 128601238 -27028882 + L2 LINE L2 2364 2454 -965 2 1566 205 307 79 0 chr4 128601474 128601575 -27028545 + MIRm SINE MIR 38 146 -130 2 1566 195 80 19 57 chr4 128601636 128601689 -27028431 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1566 219 69 0 0 chr4 128601694 128601723 -27028397 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1566 447 49 0 0 chr4 128601723 128601784 -27028336 - B1_Mm SINE Alu 0 147 87 2 1566 308 314 186 0 chr4 128601791 128601931 -27028189 - MIR SINE MIR -54 208 43 2 1566 619 218 127 17 chr4 128602797 128602970 -27027150 + MER53 DNA hAT 1 192 -1 2 1566 3828 204 64 100 chr4 128603626 128603930 -27026190 - RMER1A Other Other -2 1028 741 2 1566 931 95 65 14 chr4 128603930 128604069 -27026051 + B1_Mus1 SINE Alu 2 147 -1 2 1566 3828 223 72 98 chr4 128604069 128605138 -27024982 - RMER1A Other Other -290 740 9 2 1566 1513 45 17 0 chr4 128605486 128605663 -27024457 - B2_Mm2 SINE B2 -14 181 2 2 1566 3551 23 2 0 chr4 128605692 128606087 -27024033 - MTA_Mm LTR MaLR 0 396 1 2 1566 738 223 138 0 chr4 128607282 128607470 -27022650 + B3 SINE B2 2 215 -1 2 1566 618 236 36 48 chr4 128608279 128608395 -27021725 + RSINE1 SINE B4 3 124 -41 2 1566 198 0 0 0 chr4 128608395 128608417 -27021703 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1566 618 236 36 48 chr4 128608417 128608465 -27021655 + RSINE1 SINE B4 125 164 -1 2 1566 380 262 0 0 chr4 128608847 128608927 -27021193 + ID4 SINE ID 1 80 -3 2 1566 27 29 0 0 chr4 128609255 128609289 -27020831 + AT_rich Low_complexity Low_complexity 1 34 0 2 1566 335 371 49 45 chr4 128609950 128610193 -27019927 - MIRb SINE MIR -15 253 10 2 1566 270 0 0 0 chr4 128610856 128610886 -27019234 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1566 456 178 11 22 chr4 128612049 128612141 -27017979 + MIRc SINE MIR 80 170 -98 2 1566 294 214 0 0 chr4 128612187 128612243 -27017877 + T-rich Low_complexity Low_complexity 1 56 0 2 1566 1226 41 0 7 chr4 128612244 128612392 -27017728 - B1_Mm SINE Alu 0 147 1 2 1566 759 185 0 8 chr4 128612700 128612820 -27017300 - B1_Mur4 SINE Alu -31 119 1 2 1566 211 250 45 91 chr4 128613646 128613734 -27016386 - L2b LINE L2 -22 3353 3270 2 1566 896 154 0 20 chr4 128613775 128613921 -27016199 - B1_Mus2 SINE Alu 0 147 5 2 1566 4280 124 66 16 chr4 128614273 128614983 -27015137 + RMER6A LTR ERVK 1 746 -10 2 1566 291 276 2 0 chr4 128614997 128615066 -27015054 - ID2 SINE ID -74 78 9 2 1566 419 207 0 0 chr4 128615086 128615168 -27014952 - B1F SINE Alu 0 149 68 2 1566 354 253 21 32 chr4 128615168 128615180 -27014940 - ID_B1 SINE B4 0 224 132 2 1566 612 261 86 12 chr4 128615236 128615399 -27014721 + B4A SINE B4 46 220 -72 2 1566 244 345 27 47 chr4 128615934 128616109 -27014011 - MIRc SINE MIR -21 187 16 2 1566 851 189 0 11 chr4 128616127 128616309 -27013811 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 1566 283 141 15 15 chr4 128616319 128616384 -27013736 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1566 357 273 100 0 chr4 128616520 128616630 -27013490 + RSINE1 SINE B4 2 122 -43 2 1566 256 226 155 10 chr4 128617194 128617297 -27012823 + PB1D7 SINE Alu 1 118 -2 2 1566 602 264 14 0 chr4 128617951 128618095 -27012025 + B1F1 SINE Alu 1 146 -3 2 1566 409 277 36 114 chr4 128618095 128618118 -27012002 + B4 SINE B4 86 239 -53 2 1566 248 352 33 95 chr4 128618118 128618189 -27011931 + MT2B2 LTR ERVL 163 385 -199 2 1566 420 20 0 0 chr4 128618309 128618358 -27011762 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1566 447 19 0 0 chr4 128618358 128618409 -27011711 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1566 577 214 18 9 chr4 128618531 128618644 -27011476 - PB1D10 SINE Alu -1 116 3 2 1566 1195 259 6 76 chr4 128618669 128618686 -27011434 - B4 SINE B4 0 292 279 2 1566 252 0 0 0 chr4 128618686 128618714 -27011406 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1566 1195 259 6 76 chr4 128618714 128618794 -27011326 - B4 SINE B4 -14 278 207 2 1566 1087 148 140 243 chr4 128618794 128619222 -27010898 + ORR1C2 LTR MaLR 1 384 0 2 1566 1195 259 6 76 chr4 128619222 128619437 -27010683 - B4 SINE B4 -86 206 1 2 1566 1098 191 29 5 chr4 128619659 128619869 -27010251 + B3 SINE B2 2 216 0 2 1566 420 270 59 26 chr4 128620499 128620651 -27009469 + MIRb SINE MIR 94 250 -18 2 1566 249 163 0 23 chr4 128620864 128620908 -27009212 + PB1D7 SINE Alu 73 115 -5 2 1566 217 311 0 28 chr4 128620911 128621017 -27009103 + GA-rich Low_complexity Low_complexity 1 103 0 2 1566 694 211 11 79 chr4 128621301 128621459 -27008661 + Lx8 LINE L1 6654 6802 -671 2 1566 1465 113 42 14 chr4 128621459 128621675 -27008445 - URR1A DNA MER1_type 0 226 5 2 1566 694 211 11 79 chr4 128621675 128621706 -27008414 + Lx8 LINE L1 6803 6830 -643 2 1566 988 63 71 0 chr4 128622579 128622706 -27007414 + B1_Mus1 SINE Alu 2 137 -11 2 1566 210 37 0 0 chr4 128622706 128622733 -27007387 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1566 354 138 0 0 chr4 128622737 128622795 -27007325 + (TTA)n Simple_repeat Simple_repeat 2 59 0 2 1566 390 255 75 0 chr4 128622795 128622889 -27007231 - PB1D10 SINE Alu -14 103 3 2 1566 186 40 0 0 chr4 128622916 128622936 -27007184 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1566 1010 61 114 0 chr4 128622936 128623068 -27007052 - B1_Mus2 SINE Alu 0 147 1 2 1566 280 222 32 0 chr4 128623085 128623148 -27006972 - ID4_ SINE ID -14 69 5 2 1566 225 239 13 107 chr4 128623147 128623222 -27006898 + tRNA-Ala-GCG tRNA tRNA 1 68 -7 2 1566 1382 160 0 4 chr4 128624349 128624575 -27005545 + URR1B DNA MER1_type 1 225 0 2 1566 483 239 64 0 chr4 128625269 128625378 -27004742 - PB1D10 SINE Alu 0 117 2 2 1566 240 290 22 95 chr4 128625378 128625425 -27004695 - MT2B LTR ERVL -441 160 124 2 1566 220 288 7 132 chr4 128627582 128627726 -27002394 + L2b LINE L2 3093 3218 -157 2 1566 885 159 14 0 chr4 128628173 128628311 -27001809 - B1_Mur3 SINE Alu -1 148 9 2 1566 203 273 0 0 chr4 128628381 128628425 -27001695 - MER91C DNA Tip100 -1 139 96 2 1566 627 222 157 0 chr4 128628539 128628692 -27001428 + B3 SINE B2 2 178 -38 2 1566 273 310 19 29 chr4 128628790 128628893 -27001227 + Lx8 LINE L1 7088 7189 -284 2 1566 641 206 40 0 chr4 128628908 128629034 -27001086 + B1_Mur1 SINE Alu 1 131 -18 2 1566 588 300 113 3 chr4 128629168 128629452 -27000668 + L1MA7 LINE L1 5609 5923 -368 3 1566 862 281 98 15 chr4 128629505 128629769 -27000351 - B4A SINE B4 -2 290 5 3 1566 316 258 124 12 chr4 128629782 128629943 -27000177 + L1MA7 LINE L1 5924 6102 -189 3 1566 886 78 123 8 chr4 128629988 128630118 -27000002 - B1_Mus2 SINE Alu -2 145 1 3 1566 189 0 0 0 chr4 128630136 128630157 -26999963 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1566 522 46 0 0 chr4 128630157 128630221 -26999899 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1566 645 142 0 0 chr4 128630260 128630373 -26999747 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1566 538 244 59 0 chr4 128630569 128630688 -26999432 - RSINE1 SINE B4 -35 130 5 3 1566 22 35 0 0 chr4 128630735 128630764 -26999356 + AT_rich Low_complexity Low_complexity 1 29 0 3 1566 417 240 25 110 chr4 128630792 128630971 -26999149 - RSINE1 SINE B4 -5 160 3 3 1566 328 346 73 18 chr4 128631187 128631352 -26998768 - MER58A DNA MER1_type -46 178 5 3 1566 447 19 0 0 chr4 128631449 128631501 -26998619 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1566 910 137 7 0 chr4 128631553 128631692 -26998428 + B1_Mur4 SINE Alu 6 145 -5 3 1566 878 133 6 17 chr4 128631695 128631871 -26998249 + G-rich Low_complexity Low_complexity 4 177 0 3 1566 288 0 0 0 chr4 128632126 128632158 -26997962 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1566 441 0 0 0 chr4 128632158 128632206 -26997914 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1566 196 230 91 39 chr4 128632443 128632520 -26997600 - MIR SINE MIR -25 237 157 3 1566 354 297 113 28 chr4 128632555 128632697 -26997423 - L2b LINE L2 -14 3361 3208 3 1566 415 211 74 0 chr4 128633030 128633125 -26996995 + PB1D10 SINE Alu 1 102 -15 3 1566 192 125 0 0 chr4 128633125 128633157 -26996963 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 3 1566 468 0 0 0 chr4 128633604 128633656 -26996464 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1566 275 204 282 0 chr4 128634117 128634202 -26995918 + PB1D10 SINE Alu 3 111 -9 3 1566 249 33 0 0 chr4 128634204 128634234 -26995886 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 1566 288 308 45 36 chr4 128634246 128634357 -26995763 + PB1D10 SINE Alu 1 112 -5 3 1566 249 295 62 10 chr4 128635048 128635144 -26994976 + MIRb SINE MIR 165 265 -3 3 1566 304 293 42 39 chr4 128635680 128635863 -26994257 + L2a LINE L2 2994 3184 -242 3 1566 256 248 82 95 chr4 128635863 128636010 -26994110 + B1F SINE Alu 1 145 -4 3 1566 304 333 58 26 chr4 128636010 128636042 -26994078 + L2a LINE L2 3185 3214 -212 3 1566 243 0 0 0 chr4 128636472 128636499 -26993621 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 3 1566 496 246 103 15 chr4 128636620 128636638 -26993482 + B1F SINE Alu 1 148 -1 3 1566 562 226 0 25 chr4 128636638 128636756 -26993364 + ID_B1 SINE B4 109 223 -1 3 1566 207 217 0 0 chr4 128637530 128637590 -26992530 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1566 202 222 203 16 chr4 128638954 128639018 -26991102 + MIR3 SINE MIR 116 191 -17 3 1566 247 274 13 46 chr4 128639607 128639760 -26990360 + C-rich Low_complexity Low_complexity 5 152 0 3 1566 351 0 0 0 chr4 128640650 128640689 -26989431 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1566 1258 48 0 0 chr4 128640775 128640922 -26989198 + B1_Mm SINE Alu 1 147 0 3 1566 537 174 215 0 chr4 128640951 128641072 -26989048 + B1_Mus2 SINE Alu 1 147 0 3 1566 817 201 134 26 chr4 128641106 128641300 -26988820 + B3 SINE B2 2 216 0 3 1566 730 231 145 25 chr4 128641443 128641643 -26988477 + ID_B1 SINE B4 1 224 0 3 1566 479 270 87 7 chr4 128642480 128642618 -26987502 - B1F SINE Alu 0 149 1 3 1566 431 244 0 0 chr4 128642711 128642793 -26987327 - ID_B1 SINE B4 -1 223 142 3 1566 382 254 103 11 chr4 128643097 128643234 -26986886 - MIRb SINE MIR -61 201 56 3 1566 401 155 214 10 chr4 128643310 128643408 -26986712 + PB1D9 SINE Alu 3 120 0 3 1566 480 77 0 0 chr4 128643425 128643490 -26986630 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 3 1566 812 85 0 8 chr4 128643490 128643609 -26986511 + (GAAAA)n Simple_repeat Simple_repeat 5 122 0 3 1566 976 130 27 14 chr4 128643610 128643758 -26986362 + B1_Mur4 SINE Alu 1 150 0 3 1566 291 54 0 0 chr4 128643799 128643836 -26986284 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1566 440 239 126 3 chr4 128643914 128644056 -26986064 - B4A SINE B4 -137 155 1 3 1566 435 278 29 29 chr4 128644256 128644374 -26985746 - MLT1C LTR MaLR 0 467 346 3 1566 356 0 23 0 chr4 128644374 128644418 -26985702 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1566 435 278 29 29 chr4 128644418 128644436 -26985684 - MLT1C LTR MaLR -122 345 331 3 1566 902 201 92 34 chr4 128644451 128644657 -26985463 + URR1B DNA MER1_type 2 219 -6 3 1566 699 226 190 58 chr4 128644884 128645068 -26985052 - B4A SINE B4 0 292 108 3 1566 237 119 0 0 chr4 128645068 128645110 -26985010 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1566 699 226 190 58 chr4 128645110 128645183 -26984937 - B4A SINE B4 -185 107 1 3 1566 730 272 12 12 chr4 128645360 128645524 -26984596 - RSINE1 SINE B4 -1 164 1 3 1566 230 350 92 14 chr4 128645654 128645796 -26984324 - MIRb SINE MIR -81 187 35 3 1566 908 297 32 55 chr4 128645808 128646154 -26983966 - MTEa LTR MaLR -36 343 6 3 1566 253 250 0 99 chr4 128646418 128646489 -26983631 - MIRb SINE MIR 0 268 205 3 1566 242 299 77 7 chr4 128646582 128646702 -26983418 - MIRc SINE MIR -69 193 68 3 1566 521 326 0 0 chr4 128646731 128646869 -26983251 - MIRb SINE MIR -82 186 49 3 1566 327 180 49 0 chr4 128647025 128647086 -26983034 - B3 SINE B2 -141 75 12 3 1566 312 309 46 26 chr4 128647387 128647540 -26982580 - MER5A DNA MER1_type 0 189 34 3 1566 234 333 130 0 chr4 128647765 128647873 -26982247 + MIRb SINE MIR 66 187 -81 3 1566 526 252 50 25 chr4 128648113 128648272 -26981848 - RMER15 LTR ERVL -57 518 356 3 1566 322 250 13 0 chr4 128648930 128649006 -26981114 + MIR SINE MIR 107 183 -79 3 1566 285 336 115 26 chr4 128649063 128649176 -26980944 + MLT1A1 LTR MaLR 87 209 -156 3 1566 1113 116 81 0 chr4 128649177 128649350 -26980770 - B2_Mm1a SINE B2 -5 188 2 3 1566 890 180 6 0 chr4 128649368 128649546 -26980574 + GA-rich Low_complexity Low_complexity 2 180 0 3 1566 452 113 0 0 chr4 128649555 128649617 -26980503 + B1_Mus1 SINE Alu 1 62 -86 3 1566 207 0 0 0 chr4 128649617 128649640 -26980480 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1566 1374 35 103 0 chr4 128650178 128650352 -26979768 - B2_Mm1a SINE B2 0 193 2 3 1566 342 0 0 0 chr4 128650384 128650422 -26979698 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1566 308 273 0 0 chr4 128650429 128650495 -26979625 + B4A SINE B4 86 151 -141 3 1566 1053 208 43 5 chr4 128650504 128650712 -26979408 + B3 SINE B2 1 216 0 3 1566 185 143 0 45 chr4 128650775 128650819 -26979301 + GA-rich Low_complexity Low_complexity 1 42 0 3 1566 1820 137 112 84 chr4 128651016 128651330 -26978790 + ORR1B1 LTR MaLR 1 339 -55 3 1566 1096 51 65 0 chr4 128651330 128651468 -26978652 + B1_Mus1 SINE Alu 2 148 0 3 1566 1820 137 112 84 chr4 128651468 128651536 -26978584 + ORR1B1 LTR MaLR 340 394 0 3 1566 404 302 17 8 chr4 128651744 128651861 -26978259 - PB1D9 SINE Alu -1 119 2 3 1566 2085 149 42 8 chr4 128652014 128652367 -26977753 + ORR1B2 LTR MaLR 3 367 0 3 1566 205 88 0 29 chr4 128652415 128652450 -26977670 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1566 433 321 18 30 chr4 128652524 128652691 -26977429 + MLT1A1 LTR MaLR 242 406 -2 3 1566 1240 227 20 32 chr4 128652709 128653055 -26977065 - RLTR15 LTR ERVK -17 342 1 3 1566 213 234 273 0 chr4 128653462 128653539 -26976581 + MIRb SINE MIR 92 189 -79 3 1566 3217 146 76 57 chr4 128654167 128654464 -26975656 - RMER6D LTR ERVK -59 661 366 3 1566 329 0 24 0 chr4 128654464 128654505 -26975615 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1566 3217 146 76 57 chr4 128654505 128654855 -26975265 - RMER6D LTR ERVK -355 365 2 3 1566 1545 53 5 0 chr4 128655016 128655204 -26974916 - B2_Mm1a SINE B2 -3 190 2 3 1566 1082 95 5 0 chr4 128655535 128655759 -26974361 + (CA)n Simple_repeat Simple_repeat 1 225 0 3 1566 318 243 29 0 chr4 128655781 128655851 -26974269 + ID SINE ID 2 73 -151 3 1566 432 55 0 0 chr4 128656256 128656311 -26973809 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 3 1566 1235 62 0 0 chr4 128656348 128656494 -26973626 - B1_Mus1 SINE Alu -1 147 2 3 1566 892 97 20 88 chr4 128656517 128656664 -26973456 - B1_Mur4 SINE Alu -13 137 1 3 1566 723 184 27 60 chr4 128656694 128656844 -26973276 + B1_Mur4 SINE Alu 1 145 -5 3 1566 473 275 75 34 chr4 128656881 128657028 -26973092 + RSINE1 SINE B4 13 165 0 3 1566 610 254 85 23 chr4 128657080 128657257 -26972863 + B3A SINE B2 5 192 -6 3 1566 528 188 150 25 chr4 128657306 128657426 -26972694 + B1F SINE Alu 8 142 -7 3 1566 1119 233 103 66 chr4 128657710 128658042 -26972078 + MER31A LTR ERV1 1 357 -128 3 1566 1382 85 11 11 chr4 128658042 128658232 -26971888 - B2_Mm2 SINE B2 -4 191 2 3 1566 1119 233 103 66 chr4 128658232 128658367 -26971753 + MER31A LTR ERV1 358 485 0 3 1566 360 0 0 0 chr4 128658412 128658452 -26971668 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1566 665 248 38 8 chr4 128658853 128659012 -26971108 + ID_B1 SINE B4 79 242 -50 3 1566 340 298 101 50 chr4 128659150 128659348 -26970772 - MLT1I LTR MaLR -203 208 1 3 1566 315 222 62 0 chr4 128659370 128659454 -26970666 + MIRc SINE MIR 57 153 -115 3 1566 540 256 46 35 chr4 128659462 128659636 -26970484 + MTE2a LTR MaLR 1 176 -203 3 1566 364 323 52 22 chr4 128659651 128659787 -26970333 + MTE2a LTR MaLR 240 379 0 3 1566 1332 81 0 6 chr4 128659886 128660061 -26970059 + B2_Mm2 SINE B2 1 174 -21 3 1566 1859 126 34 14 chr4 128660169 128660466 -26969654 + MTC LTR MaLR 119 421 0 3 1566 336 302 89 36 chr4 128660473 128660641 -26969479 - MLT1L LTR MaLR -10 600 424 3 1566 498 17 0 0 chr4 128660695 128660754 -26969366 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1566 275 246 86 60 chr4 128661196 128661313 -26968807 - PB1D7 SINE Alu 0 120 1 4 1566 206 93 0 85 chr4 128661334 128661381 -26968739 + G-rich Low_complexity Low_complexity 2 44 0 4 1566 381 164 0 0 chr4 128661483 128661556 -26968564 + (ATG)n Simple_repeat Simple_repeat 1 73 0 4 1566 387 220 42 42 chr4 128661603 128661698 -26968422 - RSINE1 SINE B4 -24 141 47 4 1566 247 250 278 10 chr4 128661729 128661826 -26968294 - RSINE1 SINE B4 -14 151 29 4 1566 537 303 0 34 chr4 128662022 128662169 -26967951 - ID_B1 SINE B4 -3 221 80 4 1566 545 207 8 51 chr4 128662266 128662383 -26967737 - PB1D9 SINE Alu -8 112 1 4 1566 863 232 12 18 chr4 128662395 128662566 -26967554 - B3 SINE B2 -46 170 1 4 1566 940 160 0 7 chr4 128662574 128662719 -26967401 - B1_Mur4 SINE Alu -6 144 1 4 1566 450 0 0 0 chr4 128662723 128662773 -26967347 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1566 259 233 250 0 chr4 128662780 128662840 -26967280 - RSINE1 SINE B4 -85 80 6 4 1566 354 43 0 0 chr4 128662936 128662955 -26967165 + (A)n Simple_repeat Simple_repeat 1 19 0 4 1566 1279 35 0 0 chr4 128662955 128663100 -26967020 + B1_Mus2 SINE Alu 3 147 0 4 1566 354 43 0 0 chr4 128663100 128663126 -26966994 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1566 667 260 55 40 chr4 128663180 128663380 -26966740 - ID_B1 SINE B4 -20 204 2 4 1566 596 245 91 14 chr4 128663422 128663599 -26966521 + B3 SINE B2 3 198 0 4 1566 22 56 0 0 chr4 128663599 128663635 -26966485 + AT_rich Low_complexity Low_complexity 1 36 0 4 1566 228 302 95 0 chr4 128663659 128663722 -26966398 - ID4_ SINE ID -1 82 14 4 1566 225 305 102 0 chr4 128663669 128663728 -26966392 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 4 1566 27 0 0 0 chr4 128663731 128663758 -26966362 + AT_rich Low_complexity Low_complexity 1 27 0 4 1566 1028 193 51 90 chr4 128664169 128664504 -26965616 - RLTRETN_Mm LTR ERVK 0 322 1 4 1566 561 191 0 149 chr4 128665130 128665238 -26964882 + PB1 SINE Alu 23 123 -4 4 1566 250 234 45 201 chr4 128665150 128665284 -26964836 + MT2B2 LTR ERVL 194 306 -278 4 1566 416 326 41 28 chr4 128665285 128665430 -26964690 - LTR79 LTR ERVL -375 152 6 4 1566 256 319 21 31 chr4 128665472 128665569 -26964551 + MLT1N2 LTR MaLR 445 540 -22 4 1566 227 222 15 31 chr4 128665615 128665680 -26964440 - MLT1D LTR MaLR -8 497 434 4 1566 531 158 60 98 chr4 128665748 128665881 -26964239 - BC1_Mm scRNA scRNA -23 129 2 4 1566 294 311 58 0 chr4 128665879 128665982 -26964138 - ID_B1 SINE B4 -70 154 46 4 1566 1374 225 93 12 chr4 128666082 128666415 -26963705 - MTD LTR MaLR -22 397 51 4 1566 2280 159 8 36 chr4 128666414 128666800 -26963320 - RLTR14 LTR ERV1 -5 377 3 4 1566 290 114 23 0 chr4 128666803 128666847 -26963273 - MTD LTR MaLR -376 45 1 4 1566 394 328 39 48 chr4 128667117 128667325 -26962795 + MIRb SINE MIR 46 251 -17 4 1566 705 221 152 40 chr4 128667436 128667634 -26962486 + ID_B1 SINE B4 2 221 -3 4 1566 1114 150 0 10 chr4 128667652 128667847 -26962273 + B2_Mm2 SINE B2 1 193 -2 4 1566 566 266 70 0 chr4 128668100 128668228 -26961892 - ID_B1 SINE B4 -7 217 81 4 1566 245 238 12 70 chr4 128668279 128668365 -26961755 - B4A SINE B4 0 292 212 4 1566 818 207 88 34 chr4 128668369 128668574 -26961546 - B3 SINE B2 0 216 1 4 1566 531 251 84 60 chr4 128668667 128668951 -26961169 - RLTR15 LTR ERVK -68 291 1 4 1566 555 317 72 0 chr4 128668951 128669131 -26960989 - B4A SINE B4 -84 208 16 4 1566 535 236 0 111 chr4 128669365 128669546 -26960574 - RSINE1 SINE B4 0 165 5 4 1566 291 289 53 43 chr4 128669866 128669960 -26960160 - B1F SINE Alu -1 148 54 4 1566 283 287 201 7 chr4 128670064 128670208 -26959912 - L1M5 LINE L1 -419 5705 5534 4 1566 186 191 0 0 chr4 128671776 128671818 -26958302 + CT-rich Low_complexity Low_complexity 2 43 0 4 1566 207 0 0 0 chr4 128671838 128671861 -26958259 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1566 707 274 0 0 chr4 128671881 128672034 -26958086 - RSINE1 SINE B4 -5 160 8 4 1566 285 227 125 70 chr4 128672486 128672614 -26957506 + B1F SINE Alu 15 149 0 4 1566 225 0 0 0 chr4 128673186 128673211 -26956909 + (TAA)n Simple_repeat Simple_repeat 1 25 0 4 1566 419 250 124 7 chr4 128673294 128673439 -26956681 - RSINE1 SINE B4 0 165 4 4 1566 379 334 95 58 chr4 128673451 128673797 -26956323 - L1MC5 LINE L1 -482 7479 7121 4 1566 361 282 9 28 chr4 128673824 128673930 -26956190 - PB1D10 SINE Alu 0 117 14 4 1566 291 336 26 9 chr4 128674062 128674176 -26955944 + MER102b DNA MER1_type 109 224 -117 4 1566 778 240 92 14 chr4 128674400 128674607 -26955513 - B4 SINE B4 -69 223 1 4 1566 234 0 0 0 chr4 128675356 128675382 -26954738 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1566 229 200 0 0 chr4 128675665 128675710 -26954410 + PB1 SINE Alu 80 124 -3 4 1566 250 248 129 140 chr4 128676158 128676336 -26953784 - MIR SINE MIR -47 215 40 4 1566 955 193 7 28 chr4 128676872 128677073 -26953047 + B3 SINE B2 2 183 -12 4 1566 455 191 61 43 chr4 128677102 128677217 -26952903 + PB1D9 SINE Alu 2 118 -2 4 1566 352 289 66 15 chr4 128677747 128677884 -26952236 - RSINE1 SINE B4 -8 157 14 4 1566 307 271 195 0 chr4 128677887 128678005 -26952115 - B1F SINE Alu -8 141 1 4 1566 261 300 29 48 chr4 128679027 128679132 -26950988 + RSINE1 SINE B4 9 111 -54 4 1566 840 111 0 25 chr4 128679951 128680108 -26950012 - RMER17B LTR ERVK -495 463 311 4 1566 591 241 327 4 chr4 128680117 128680392 -26949728 - Lx8 LINE L1 -34 7439 7076 4 1566 1099 161 0 25 chr4 128681341 128681539 -26948581 + URR1B DNA MER1_type 1 193 -32 4 1566 458 0 35 0 chr4 128681539 128681596 -26948524 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 4 1566 1279 31 0 0 chr4 128681596 128681755 -26948365 - B2_Mm1a SINE B2 -33 160 2 4 1566 1043 127 30 0 chr4 128681757 128681922 -26948198 - B2_Mm1t SINE B2 -22 171 2 4 1566 359 164 0 0 chr4 128681922 128681973 -26948147 + URR1B DNA MER1_type 175 225 0 4 1566 22 0 0 0 chr4 128682282 128682304 -26947816 + GC_rich Low_complexity Low_complexity 1 22 0 4 1566 216 111 28 0 chr4 128682870 128682906 -26947214 + PB1D10 SINE Alu 57 93 -24 4 1566 487 122 0 35 chr4 128682875 128682960 -26947160 + B1_Mur2 SINE Alu 66 147 -2 4 1566 580 224 51 14 chr4 128683157 128683309 -26946811 - B3A SINE B2 -43 152 8 4 1566 279 238 63 0 chr4 128683387 128683450 -26946670 - RSINE1 SINE B4 -59 106 40 4 1566 416 214 11 22 chr4 128683510 128683601 -26946519 - PB1D7 SINE Alu -1 119 30 4 1566 255 125 0 0 chr4 128683615 128683655 -26946465 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1566 2394 71 9 3 chr4 128683665 128684003 -26946117 - L1_Mus3 LINE L1 -7 6631 6292 4 1566 338 336 35 0 chr4 128684009 128684125 -26945995 - PB1 SINE Alu -3 124 5 4 1566 202 128 26 0 chr4 128685660 128685699 -26944421 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1566 422 196 84 0 chr4 128685811 128685918 -26944202 - B1_Mur3 SINE Alu 0 149 34 4 1566 207 0 0 0 chr4 128686005 128686028 -26944092 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1566 435 19 0 0 chr4 128686028 128686080 -26944040 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1566 225 313 48 0 chr4 128687437 128687520 -26942600 + RLTR22_Mur LTR ERVK 1263 1349 -499 4 1566 189 0 0 0 chr4 128687740 128687761 -26942359 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1566 23 0 0 0 chr4 128688046 128688069 -26942051 + AT_rich Low_complexity Low_complexity 1 23 0 4 1566 224 290 29 0 chr4 128688519 128688588 -26941532 + ID4_ SINE ID 2 72 -11 4 1566 201 39 0 0 chr4 128689041 128689067 -26941053 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1566 1381 60 27 0 chr4 128691390 128691573 -26938547 - B2_Mm2 SINE B2 -6 189 2 4 1566 571 256 94 31 chr4 128691603 128691857 -26938263 + B4 SINE B4 2 271 -21 4 1566 288 0 0 0 chr4 128692012 128692044 -26938076 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1566 237 232 146 0 chr4 128692080 128692162 -26937958 - RCHARR1 DNA MER1_type -158 816 723 4 1566 627 140 10 0 chr4 128692168 128692268 -26937852 + B1_Mus1 SINE Alu 35 135 -13 4 1566 879 145 6 22 chr4 128692291 128692474 -26937646 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1566 254 95 24 0 chr4 128692481 128692523 -26937597 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 4 1566 476 271 87 12 chr4 128692542 128692703 -26937417 - RCHARR1 DNA MER1_type -243 731 559 4 1566 23 0 0 0 chr4 128692706 128692729 -26937391 + GC_rich Low_complexity Low_complexity 1 23 0 4 1566 330 229 36 0 chr4 128692760 128692843 -26937277 + RSINE1 SINE B4 47 132 -33 4 1566 837 248 127 38 chr4 128692874 128693189 -26936931 - RCHARR1 DNA MER1_type -487 487 145 4 1566 507 41 480 0 chr4 128694010 128694108 -26936012 + B1_Mus2 SINE Alu 1 145 -2 4 1566 601 262 20 13 chr4 128694280 128694431 -26935689 + ID_B1 SINE B4 73 224 0 4 1566 1115 88 0 0 chr4 128695184 128695332 -26934788 - B1_Mus1 SINE Alu 0 148 1 4 1566 234 0 0 0 chr4 128695352 128695378 -26934742 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1566 307 243 0 41 chr4 128695388 128695461 -26934659 - RSINE1 SINE B4 -85 80 11 4 1566 207 0 0 0 chr4 128695476 128695499 -26934621 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1566 270 264 91 0 chr4 128695544 128695654 -26934466 + ID_B1 SINE B4 50 169 -55 4 1566 1267 85 0 36 chr4 128695686 128695882 -26934238 + B2_Mm2 SINE B2 1 189 -6 4 1566 247 336 116 20 chr4 128696842 128696988 -26933132 - MLT1K LTR MaLR -310 285 126 4 1566 197 370 9 44 chr4 128698011 128698124 -26931996 + MIR SINE MIR 18 126 -82 5 1566 180 266 100 12 chr4 128698202 128698282 -26931838 - L2b LINE L2 -32 3343 3257 5 1566 768 259 34 19 chr4 128700384 128700593 -26929527 - B3 SINE B2 -2 214 3 5 1566 1409 21 0 114 chr4 128700602 128700638 -26929482 - B2_Mm1a SINE B2 -5 188 161 5 1566 739 222 7 7 chr4 128700638 128700783 -26929337 - B1_Mus2 SINE Alu 0 147 3 5 1566 237 22 21 62 chr4 128700793 128700841 -26929279 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1566 1409 21 0 114 chr4 128700841 128701004 -26929116 - B2_Mm1a SINE B2 -33 160 2 5 1566 415 231 236 6 chr4 128701010 128701171 -26928949 - B3A SINE B2 0 198 1 5 1566 715 201 21 0 chr4 128701484 128701628 -26928492 - B1_Mur1 SINE Alu -1 148 2 5 1566 29 60 0 0 chr4 128701638 128701688 -26928432 + AT_rich Low_complexity Low_complexity 1 50 0 5 1566 252 295 0 25 chr4 128701993 128702073 -26928047 - MLT2B4 LTR ERVL -103 453 376 5 1566 1120 61 0 33 chr4 128702719 128702732 -26927388 - B1_Mus1 SINE Alu 0 148 140 5 1566 207 0 0 0 chr4 128702732 128702755 -26927365 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1566 1120 61 0 33 chr4 128702755 128702893 -26927227 - B1_Mus1 SINE Alu -9 139 2 5 1566 1343 196 192 6 chr4 128702936 128703279 -26926841 - MTD LTR MaLR 0 419 13 5 1566 739 228 52 146 chr4 128703311 128703525 -26926595 - MTD-int LTR MaLR 0 1258 1052 5 1566 596 186 75 37 chr4 128703525 128703659 -26926461 - B1_Mur1 SINE Alu -10 139 1 5 1566 739 228 52 146 chr4 128703659 128703736 -26926384 - MTD-int LTR MaLR -207 1051 985 5 1566 1223 34 0 0 chr4 128703736 128703883 -26926237 + B1_Mus2 SINE Alu 1 147 0 5 1566 739 228 52 146 chr4 128703883 128703919 -26926201 - MTD-int LTR MaLR -274 984 962 5 1566 445 279 100 17 chr4 128703989 128704216 -26925904 - RLTR12B LTR ERVK -57 511 270 5 1566 899 248 12 60 chr4 128704248 128704561 -26925559 - RLTR12B LTR ERVK -245 283 23 5 1566 958 303 137 58 chr4 128704555 128705146 -26924974 - MTD-int LTR MaLR -290 968 331 5 1566 214 134 0 208 chr4 128706225 128706451 -26923669 + (CCCCAG)n Simple_repeat Simple_repeat 2 180 0 5 1566 218 130 0 206 chr4 128707439 128707643 -26922477 + (CCCCAG)n Simple_repeat Simple_repeat 1 162 0 5 1566 223 133 0 207 chr4 128707785 128708012 -26922108 + (CCCCAG)n Simple_repeat Simple_repeat 1 180 0 5 1566 606 247 54 7 chr4 128708084 128708231 -26921889 - MTD-int LTR MaLR -899 359 206 5 1566 830 141 0 29 chr4 128708240 128708379 -26921741 + B1_Mur4 SINE Alu 9 143 -7 5 1566 821 186 12 0 chr4 128708383 128708555 -26921565 + GA-rich Low_complexity Low_complexity 2 175 0 5 1566 182 62 31 0 chr4 128708554 128708586 -26921534 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 5 1566 203 283 191 21 chr4 128708605 128708699 -26921421 + L2b LINE L2 3230 3339 -36 5 1566 344 297 9 9 chr4 128709185 128709297 -26920823 - PB1D10 SINE Alu -5 112 1 5 1566 203 355 36 36 chr4 128711236 128711347 -26918773 - L2b LINE L2 -17 3358 3248 5 1566 377 305 92 7 chr4 128711556 128711698 -26918422 - MIRb SINE MIR -66 202 49 5 1566 324 64 0 0 chr4 128711808 128711855 -26918265 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1566 1088 82 0 13 chr4 128711855 128711993 -26918127 - B1_Mus2 SINE Alu -9 138 1 5 1566 250 227 162 62 chr4 128712254 128712334 -26917786 - PB1D10 SINE Alu 0 117 30 5 1566 328 291 31 68 chr4 128712370 128712532 -26917588 + L3 LINE CR1 3726 3881 -608 5 1567 1767 160 42 18 chr4 128712809 128713209 -26916911 + RMER17C LTR ERVK 1 410 0 5 1567 350 239 179 48 chr4 128713450 128713595 -26916525 - MER5A DNA MER1_type -23 166 3 5 1567 27 0 0 0 chr4 128713798 128713825 -26916295 + AT_rich Low_complexity Low_complexity 1 27 0 5 1567 609 243 7 7 chr4 128714314 128714459 -26915661 + B1_Mur3 SINE Alu 5 149 0 5 1567 1159 48 0 7 chr4 128714561 128714709 -26915411 + B1_Mus2 SINE Alu 1 147 0 5 1567 1192 77 6 6 chr4 128714929 128714941 -26915179 - B2_Mm2 SINE B2 -25 170 158 5 1567 441 54 0 0 chr4 128714941 128714997 -26915123 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 5 1567 1192 77 6 6 chr4 128714997 128715154 -26914966 - B2_Mm2 SINE B2 -38 157 1 5 1567 189 74 0 0 chr4 128715251 128715278 -26914842 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 5 1567 596 180 31 0 chr4 128715431 128715576 -26914544 + B3 SINE B2 36 193 -5 5 1567 369 295 15 58 chr4 128715776 128715834 -26914286 - RMER15 LTR ERVL -23 552 494 5 1567 1149 108 159 0 chr4 128715834 128716029 -26914091 - URR1A DNA MER1_type 0 226 1 5 1567 369 295 15 58 chr4 128716029 128716107 -26914013 - RMER15 LTR ERVL -82 493 422 5 1567 286 109 47 0 chr4 128716285 128716349 -26913771 + T-rich Low_complexity Low_complexity 4 70 0 5 1567 746 260 13 22 chr4 128716354 128716578 -26913542 - ID_B1 SINE B4 0 224 3 5 1567 483 169 34 0 chr4 128716674 128716792 -26913328 + CT-rich Low_complexity Low_complexity 4 125 0 5 1567 254 264 22 22 chr4 128716843 128716932 -26913188 + CT-rich Low_complexity Low_complexity 4 92 0 5 1567 434 288 75 8 chr4 128717059 128717192 -26912928 - B1F SINE Alu -1 148 7 5 1567 1212 34 0 0 chr4 128717717 128717863 -26912257 - B1_Mus2 SINE Alu 0 147 2 5 1567 228 242 192 48 chr4 128717929 128718033 -26912087 + MIR SINE MIR 28 146 -122 5 1567 204 302 75 60 chr4 128718713 128718847 -26911273 - MIR3 SINE MIR -67 141 6 5 1567 535 239 141 0 chr4 128719217 128719380 -26910740 + MIRb SINE MIR 38 223 -45 5 1567 288 0 0 0 chr4 128719394 128719426 -26910694 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 1567 1119 36 7 0 chr4 128719428 128719568 -26910552 - B1_Mus2 SINE Alu -6 141 1 5 1567 845 211 100 0 chr4 128719575 128719765 -26910355 - B3 SINE B2 0 216 8 5 1567 180 239 69 14 chr4 128719989 128720061 -26910059 - MIRc SINE MIR -128 140 65 5 1567 221 257 113 14 chr4 128720223 128720294 -26909826 - ID2 SINE ID -5 78 1 5 1567 287 306 2 2 chr4 128720453 128720531 -26909589 - MIRb SINE MIR -100 108 36 5 1567 1213 111 0 21 chr4 128720572 128720766 -26909354 + B2_Mm2 SINE B2 1 190 -5 5 1567 196 283 106 78 chr4 128721543 128721720 -26908400 + MIR3 SINE MIR 1 176 -92 5 1567 379 324 36 0 chr4 128721760 128721871 -26908249 - PB1D7 SINE Alu -3 117 3 5 1567 283 354 10 1 chr4 128721950 128722075 -26908045 + MIRb SINE MIR 16 148 -120 5 1567 333 0 0 0 chr4 128722600 128722637 -26907483 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1567 654 13 0 0 chr4 128722637 128722711 -26907409 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1567 200 325 16 71 chr4 128723128 128723254 -26906866 + MIRb SINE MIR 57 175 -93 5 1567 371 300 4 111 chr4 128723256 128723404 -26906716 - PB1D7 SINE Alu -8 141 2 5 1567 233 259 52 0 chr4 128723404 128723452 -26906668 - ID4_ SINE ID -31 52 2 5 1567 340 262 113 40 chr4 128723545 128723696 -26906424 + MIRb SINE MIR 98 259 -9 5 1567 584 184 39 10 chr4 128724067 128724171 -26905949 - B1_Mur2 SINE Alu -1 148 42 5 1567 395 350 0 7 chr4 128724212 128724350 -26905770 - B1_Mur1 SINE Alu -12 137 1 5 1567 248 53 26 0 chr4 128724425 128724463 -26905657 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 5 1567 898 200 12 42 chr4 128724471 128724638 -26905482 - RSINE1 SINE B4 -2 163 2 5 1567 355 273 0 0 chr4 128724641 128724718 -26905402 - PB1D10 SINE Alu -40 77 1 5 1567 210 132 18 36 chr4 128726120 128726175 -26903945 + CT-rich Low_complexity Low_complexity 3 56 0 5 1567 185 293 7 115 chr4 128726902 128727041 -26903079 + L2c LINE L2 3234 3357 -30 5 1567 454 243 99 0 chr4 128727100 128727211 -26902909 + RSINE1 SINE B4 7 128 -37 5 1567 207 0 0 0 chr4 128727610 128727633 -26902487 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1567 215 260 80 0 chr4 128727788 128727838 -26902282 + L2c LINE L2 3331 3384 -3 5 1567 284 305 64 37 chr4 128728265 128728374 -26901746 + MER94 DNA AcHobo 2 113 -21 5 1567 281 303 97 39 chr4 128728981 128729084 -26901036 + B3A SINE B2 1 109 -89 5 1567 668 172 57 16 chr4 128729601 128729725 -26900395 + B3 SINE B2 88 216 0 5 1567 23 0 0 0 chr4 128729727 128729750 -26900370 + AT_rich Low_complexity Low_complexity 1 23 0 5 1567 222 62 0 0 chr4 128729777 128729809 -26900311 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1567 1110 82 0 27 chr4 128729809 128729949 -26900171 - B1_Mus1 SINE Alu -8 140 2 5 1567 421 366 0 43 chr4 128729949 128730089 -26900031 + ID_B1 SINE B4 80 213 -11 5 1567 450 289 24 24 chr4 128729976 128730100 -26900020 + B1F SINE Alu 26 149 0 5 1567 534 207 100 36 chr4 128730907 128731047 -26899073 + B1_Mur1 SINE Alu 1 149 0 5 1567 1261 142 9 29 chr4 128731315 128731525 -26898595 - B3 SINE B2 -10 206 1 5 1567 226 242 16 16 chr4 128732818 128732881 -26897239 + CT-rich Low_complexity Low_complexity 1 63 0 5 1567 229 170 64 0 chr4 128732883 128732930 -26897190 - ID_B1 SINE B4 -2 222 173 5 1567 266 154 242 15 chr4 128732903 128732969 -26897151 - PB1D10 SINE Alu -28 89 9 5 1567 674 211 13 33 chr4 128733249 128733401 -26896719 + B1_Mur2 SINE Alu 1 149 0 5 1567 1265 248 90 9 chr4 128733441 128733775 -26896345 - MTEb LTR MaLR -16 363 3 5 1567 459 0 0 0 chr4 128733981 128734032 -26896088 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1567 347 272 14 111 chr4 128734041 128734248 -26895872 + L2 LINE L2 2015 2201 -1218 5 1567 204 111 0 0 chr4 128735409 128735445 -26894675 + (CGG)n Simple_repeat Simple_repeat 2 37 0 5 1567 21 0 0 0 chr4 128735590 128735611 -26894509 + GC_rich Low_complexity Low_complexity 1 21 0 5 1567 23 0 0 0 chr4 128735638 128735661 -26894459 + GC_rich Low_complexity Low_complexity 1 23 0 5 1567 210 105 0 0 chr4 128735679 128735717 -26894403 + (CCG)n Simple_repeat Simple_repeat 2 39 0 5 1567 195 241 34 17 chr4 128737086 128737145 -26892975 + MIRm SINE MIR 74 133 -143 5 1567 240 316 61 99 chr4 128738051 128738222 -26891898 - MIRm SINE MIR -76 192 17 5 1567 510 31 0 0 chr4 128738570 128738634 -26891486 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1567 254 304 96 19 chr4 128738651 128738755 -26891365 - B4 SINE B4 -100 192 81 5 1567 709 167 79 14 chr4 128738757 128738897 -26891223 - B1_Mur3 SINE Alu 0 149 1 5 1567 520 266 137 0 chr4 128738920 128739059 -26891061 - ID_B1 SINE B4 -65 159 2 6 1567 376 245 40 10 chr4 128739068 128739167 -26890953 - PB1D10 SINE Alu -8 109 8 6 1567 307 250 16 0 chr4 128739114 128739178 -26890942 - B4A SINE B4 -146 146 82 6 1567 198 103 0 0 chr4 128739195 128739224 -26890896 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 6 1567 234 291 138 29 chr4 128739848 128739986 -26890134 + MER34A1 LTR ERV1 409 561 -26 6 1567 392 294 8 8 chr4 128740281 128740401 -26889719 - PB1D7 SINE Alu 0 120 1 6 1567 323 222 12 47 chr4 128740453 128740538 -26889582 - ID4_ SINE ID 0 83 2 6 1567 1224 54 0 0 chr4 128740714 128740861 -26889259 + B1_Mus1 SINE Alu 2 148 0 6 1567 393 280 37 18 chr4 128741251 128741384 -26888736 - B1F1 SINE Alu -2 147 1 6 1567 254 330 19 76 chr4 128741299 128741404 -26888716 - B4 SINE B4 -128 164 66 6 1567 1148 78 0 0 chr4 128741461 128741602 -26888518 + B1_Mus1 SINE Alu 2 142 -6 6 1567 302 242 117 172 chr4 128741701 128741758 -26888362 - ID_B1 SINE B4 -1 223 171 6 1567 1364 105 16 0 chr4 128741758 128741948 -26888172 - B2_Mm2 SINE B2 0 195 3 6 1567 302 242 117 172 chr4 128741948 128742035 -26888085 - ID_B1 SINE B4 -54 170 87 6 1567 750 196 7 45 chr4 128742191 128742346 -26887774 - B1_Mur4 SINE Alu -1 149 1 6 1567 228 272 11 100 chr4 128742961 128743051 -26887069 - ID4_ SINE ID 0 83 2 6 1567 255 285 6 0 chr4 128743076 128743143 -26886977 - PB1D10 SINE Alu -48 101 31 6 1567 432 0 0 0 chr4 128743153 128743201 -26886919 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1567 268 233 0 0 chr4 128743380 128743453 -26886667 + T-rich Low_complexity Low_complexity 1 73 0 6 1567 4071 96 25 2 chr4 128743460 128744026 -26886094 - L1_Mus2 LINE L1 0 6566 5988 6 1567 1153 188 5 14 chr4 128744037 128744253 -26885867 - B3 SINE B2 -1 215 2 6 1567 734 164 6 70 chr4 128745032 128745189 -26884931 - B1_Mus2 SINE Alu 0 147 1 6 1567 204 40 0 0 chr4 128745915 128745940 -26884180 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1567 491 112 10 0 chr4 128745940 128746038 -26884082 + (GA)n Simple_repeat Simple_repeat 1 99 0 6 1567 1181 75 0 0 chr4 128746401 128746548 -26883572 - B1_Mus2 SINE Alu 0 147 1 6 1567 521 234 39 193 chr4 128746748 128746786 -26883334 + B3A SINE B2 2 35 -163 6 1567 1138 76 0 0 chr4 128746786 128746930 -26883190 + B1_Mus2 SINE Alu 1 144 -3 6 1567 521 234 39 193 chr4 128746930 128747124 -26882996 + B3A SINE B2 36 197 -1 6 1567 227 219 234 0 chr4 128747180 128747244 -26882876 - ID4 SINE ID -3 80 2 6 1567 197 0 0 132 chr4 128747474 128747512 -26882608 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6 1567 1388 12 0 6 chr4 128747512 128747669 -26882451 - B2_Mm1a SINE B2 -31 162 6 6 1567 444 254 183 48 chr4 128747707 128747893 -26882227 + B3 SINE B2 6 216 0 6 1567 477 284 26 78 chr4 128747963 128748154 -26881966 + B3A SINE B2 2 182 -16 6 1567 887 217 38 19 chr4 128748187 128748398 -26881722 + B3 SINE B2 1 215 -1 6 1567 327 132 0 0 chr4 128748786 128748854 -26881266 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1567 180 0 0 0 chr4 128748862 128748882 -26881238 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1567 192 40 0 0 chr4 128748882 128748906 -26881214 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1567 243 0 0 0 chr4 128749379 128749406 -26880714 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1567 444 292 169 0 chr4 128750372 128750550 -26879570 + ID_B1 SINE B4 5 212 -12 6 1567 189 0 0 0 chr4 128750552 128750573 -26879547 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1567 1589 52 0 5 chr4 128751299 128751493 -26878627 - B2_Mm2 SINE B2 -1 194 2 6 1567 347 248 142 90 chr4 128751523 128751678 -26878442 - RSINE1 SINE B4 0 165 3 6 1567 580 177 153 0 chr4 128751686 128751810 -26878310 - B1_Mur2 SINE Alu -5 144 2 6 1567 344 99 348 18 chr4 128753660 128753772 -26876348 - B2_Mm2 SINE B2 0 195 47 6 1567 1277 86 11 0 chr4 128753819 128753994 -26876126 - B2_Mm1t SINE B2 -14 179 3 6 1567 1009 248 29 47 chr4 128754066 128754341 -26875779 - B4 SINE B4 -20 272 3 6 1567 204 67 0 0 chr4 128754507 128754537 -26875583 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 6 1567 1147 63 0 0 chr4 128754542 128754684 -26875436 - B1_Mus2 SINE Alu -5 142 1 6 1567 1482 38 54 0 chr4 128754697 128754882 -26875238 - B2_Mm2 SINE B2 0 195 1 6 1567 571 239 72 36 chr4 128754985 128755149 -26874971 + ID_B1 SINE B4 82 248 -44 6 1567 717 208 20 62 chr4 128755333 128755523 -26874597 - B3 SINE B2 -4 194 1 6 1567 828 171 159 0 chr4 128755652 128755828 -26874292 - B3 SINE B2 -10 206 3 6 1567 274 296 95 9 chr4 128756552 128756668 -26873452 - MIRc SINE MIR -18 250 125 6 1567 427 227 26 43 chr4 128756827 128756942 -26873178 + PB1D10 SINE Alu 5 117 0 6 1567 326 321 35 62 chr4 128756947 128757060 -26873060 + PB1D7 SINE Alu 1 110 -10 6 1567 1163 68 0 13 chr4 128757104 128757254 -26872866 + B1_Mus1 SINE Alu 1 148 0 6 1567 196 289 133 10 chr4 128757324 128757422 -26872698 + MIRb SINE MIR 89 198 -70 6 1567 303 299 71 52 chr4 128758544 128758699 -26871421 - MER5B DNA MER1_type -3 175 18 6 1567 206 277 0 0 chr4 128760284 128760331 -26869789 + CT-rich Low_complexity Low_complexity 4 50 0 6 1567 1076 126 11 33 chr4 128760554 128760735 -26869385 - B2_Mm2 SINE B2 -18 177 1 6 1567 468 0 0 0 chr4 128760773 128760825 -26869295 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1567 182 118 29 0 chr4 128761688 128761722 -26868398 + (TATG)n Simple_repeat Simple_repeat 1 35 0 6 1567 238 269 15 0 chr4 128762149 128762216 -26867904 - ID4 SINE ID -13 70 3 6 1567 264 299 26 0 chr4 128762469 128762546 -26867574 + ID4_ SINE ID 1 79 -4 6 1567 849 65 0 0 chr4 128763164 128763271 -26866849 - B1_Mus2 SINE Alu -39 108 2 6 1567 261 274 105 23 chr4 128763588 128763674 -26866446 - L2a LINE L2 -42 3384 3292 6 1567 276 328 89 70 chr4 128763755 128764070 -26866050 - ORR1E LTR MaLR -6 353 33 6 1567 339 312 89 44 chr4 128765428 128765676 -26864444 + ERVL-E-int LTR ERVL 895 1153 -4514 6 1567 462 160 40 0 chr4 128765732 128765807 -26864313 - ID_B1 SINE B4 -2 222 145 6 1567 386 248 26 17 chr4 128765946 128766061 -26864059 - ID_B1 SINE B4 -107 117 2 6 1567 228 86 0 0 chr4 128766348 128766383 -26863737 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 6 1567 471 231 51 89 chr4 128766664 128766821 -26863299 + MLT1C LTR MaLR 32 182 -285 6 1567 324 0 0 0 chr4 128766889 128766925 -26863195 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1567 468 0 0 0 chr4 128766925 128766976 -26863144 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1567 284 268 144 0 chr4 128767282 128767379 -26862741 + ERVL-E-int LTR ERVL 2200 2310 -3447 6 1567 683 250 80 55 chr4 128767388 128767552 -26862568 - ID_B1 SINE B4 -12 212 45 6 1567 1138 116 128 20 chr4 128767552 128767755 -26862365 - URR1A DNA MER1_type 0 226 2 6 1567 683 250 80 55 chr4 128767755 128767789 -26862331 - ID SINE ID -180 44 9 6 1567 552 317 59 99 chr4 128768140 128768308 -26861812 + B4A SINE B4 25 204 -88 6 1567 615 265 14 0 chr4 128768308 128768455 -26861665 + RSINE1 SINE B4 3 151 -14 6 1567 369 0 0 0 chr4 128768461 128768502 -26861618 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1567 552 317 59 99 chr4 128768502 128768599 -26861521 + B4A SINE B4 210 286 -6 6 1567 312 309 0 0 chr4 128768603 128768771 -26861349 + (CA)n Simple_repeat Simple_repeat 1 168 0 6 1567 229 267 12 96 chr4 128768796 128768879 -26861241 + B4 SINE B4 217 292 0 6 1567 188 257 0 26 chr4 128768884 128768960 -26861160 + (CATA)n Simple_repeat Simple_repeat 4 77 0 6 1567 180 0 0 0 chr4 128769011 128769031 -26861089 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1567 213 290 36 45 chr4 128769031 128769143 -26860977 + MIR SINE MIR 9 119 -143 6 1567 709 69 0 73 chr4 128769459 128769569 -26860551 + B2_Mm2 SINE B2 1 102 -93 6 1567 864 208 58 0 chr4 128769687 128769860 -26860260 - B3 SINE B2 -5 211 29 6 1567 499 202 85 19 chr4 128769862 128769968 -26860152 - B1_Mur1 SINE Alu -23 126 14 6 1567 323 274 176 17 chr4 128769866 128769985 -26860135 - B4 SINE B4 -72 220 83 6 1567 222 91 0 0 chr4 128769977 128770010 -26860110 - B3A SINE B2 -164 34 2 6 1567 317 294 72 48 chr4 128770012 128770137 -26859983 + ERVL-B4-int LTR ERVL 4704 4831 -883 6 1567 444 255 10 0 chr4 128770367 128770464 -26859656 + B4A SINE B4 1 98 -194 6 1567 1117 62 0 14 chr4 128770464 128770611 -26859509 + B2_Mm2 SINE B2 1 145 -50 6 1567 270 0 0 0 chr4 128770611 128770641 -26859479 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1567 499 294 13 32 chr4 128770659 128770817 -26859303 + B4A SINE B4 83 237 -55 6 1567 1204 54 0 0 chr4 128770821 128770968 -26859152 + B1_Mus2 SINE Alu 1 147 0 6 1567 180 0 0 0 chr4 128770968 128770988 -26859132 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1567 206 182 0 15 chr4 128771080 128771147 -26858973 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1567 399 68 0 0 chr4 128771709 128771768 -26858352 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 6 1567 273 304 12 12 chr4 128772029 128772042 -26858078 - ID4_ SINE ID -2 81 7 6 1567 281 274 0 0 chr4 128772042 128772104 -26858016 - tRNA-Ala-GCY_ tRNA tRNA -12 63 2 6 1567 366 224 0 84 chr4 128772830 128772937 -26857183 - MLT1A1 LTR MaLR -3 405 308 6 1567 306 168 41 21 chr4 128772940 128773037 -26857083 + CT-rich Low_complexity Low_complexity 6 104 0 6 1567 842 266 58 2 chr4 128773053 128773275 -26856845 - ID_B1 SINE B4 -46 246 2 6 1567 231 114 0 0 chr4 128773340 128773375 -26856745 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1567 506 91 13 0 chr4 128773446 128773523 -26856597 + (TG)n Simple_repeat Simple_repeat 2 79 0 7 1567 595 95 0 12 chr4 128773540 128773625 -26856495 - B1_Mus2 SINE Alu 0 147 64 7 1567 720 230 86 6 chr4 128774411 128774573 -26855547 - B3A SINE B2 -23 175 1 7 1567 792 32 0 0 chr4 128774577 128774672 -26855448 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 7 1567 1354 159 5 5 chr4 128774686 128774901 -26855219 - B3 SINE B2 0 216 2 7 1567 884 119 86 0 chr4 128775128 128775279 -26854841 + B2_Mm2 SINE B2 31 194 -1 7 1567 369 0 0 0 chr4 128775768 128775809 -26854311 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1567 459 245 19 0 chr4 128776214 128776320 -26853800 + PB1D10 SINE Alu 4 111 -6 7 1567 766 112 13 38 chr4 128776323 128776481 -26853639 + GA-rich Low_complexity Low_complexity 4 157 0 7 1567 1166 58 17 17 chr4 128776443 128776528 -26853592 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 7 1567 954 136 0 0 chr4 128776528 128776683 -26853437 + (GGGA)n Simple_repeat Simple_repeat 3 157 0 7 1567 1166 58 17 17 chr4 128776683 128776774 -26853346 + (GAAA)n Simple_repeat Simple_repeat 1 91 0 7 1567 356 190 13 0 chr4 128776771 128776850 -26853270 + GA-rich Low_complexity Low_complexity 3 82 0 7 1567 318 272 37 55 chr4 128776851 128776939 -26853181 + L1MEg LINE L1 1842 1929 -4155 7 1567 337 253 192 58 chr4 128776939 128777111 -26853009 + B3A SINE B2 1 195 -3 7 1567 318 272 37 55 chr4 128777111 128777131 -26852989 + L1MEg LINE L1 1930 1948 -4136 7 1567 679 218 8 0 chr4 128777232 128777356 -26852764 + RSINE1 SINE B4 13 137 -28 7 1567 359 0 43 0 chr4 128777358 128777404 -26852716 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 7 1567 430 167 298 0 chr4 128777424 128777538 -26852582 + B1_Mus1 SINE Alu 1 148 0 7 1567 188 67 0 32 chr4 128777676 128777707 -26852413 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1567 847 159 0 42 chr4 128777707 128777851 -26852269 - B1_Mus2 SINE Alu -9 138 1 7 1567 588 167 51 26 chr4 128777962 128778079 -26852041 + PB1D9 SINE Alu 1 120 0 7 1567 243 0 0 0 chr4 128778096 128778123 -26851997 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1567 566 214 14 84 chr4 128778166 128778309 -26851811 - RSINE1 SINE B4 -22 143 11 7 1567 896 268 81 50 chr4 128778413 128778696 -26851424 + MTEa LTR MaLR 1 292 -87 7 1567 2659 32 0 13 chr4 128778698 128779016 -26851104 - L1Md_A LINE L1 0 6582 6269 7 1567 1488 58 21 5 chr4 128779031 128779223 -26850897 - B2_Mm2 SINE B2 0 195 1 7 1567 1028 108 19 0 chr4 128779229 128779386 -26850734 - B2_Mm2 SINE B2 -7 188 29 7 1567 245 222 111 0 chr4 128779410 128779473 -26850647 + MTEa LTR MaLR 310 379 0 7 1567 1717 26 0 0 chr4 128780133 128780325 -26849795 + B2_Mm1t SINE B2 2 193 0 7 1567 225 299 69 0 chr4 128780349 128780436 -26849684 + MIRb SINE MIR 105 197 -71 7 1567 808 278 15 0 chr4 128780438 128780636 -26849484 - B3 SINE B2 -14 202 2 7 1567 498 127 0 81 chr4 128781869 128781955 -26848165 + B1_Mur2 SINE Alu 57 135 -14 7 1567 519 165 0 0 chr4 128781955 128782064 -26848056 + (TG)n Simple_repeat Simple_repeat 1 109 0 7 1567 547 256 12 75 chr4 128782079 128782252 -26847868 - RSINE1 SINE B4 -2 163 2 7 1567 258 81 0 0 chr4 128782256 128782293 -26847827 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 7 1567 191 280 100 70 chr4 128782446 128782546 -26847574 - MIR SINE MIR -81 127 25 7 1567 240 35 0 0 chr4 128782569 128782598 -26847522 + (CCA)n Simple_repeat Simple_repeat 1 29 0 7 1567 213 83 28 0 chr4 128783143 128783179 -26846941 - ID4 SINE ID -44 39 3 7 1567 507 33 0 0 chr4 128784239 128784300 -26845820 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1567 203 0 37 0 chr4 128784424 128784451 -26845669 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 7 1567 341 321 24 0 chr4 128784451 128784535 -26845585 - PB1D7 SINE Alu -14 106 21 7 1567 351 325 25 37 chr4 128785736 128785899 -26844221 + MIR SINE MIR 92 252 -10 7 1567 295 274 21 10 chr4 128785910 128786006 -26844114 - L2c LINE L2 -204 3183 3087 7 1567 342 279 13 0 chr4 128787030 128787109 -26843011 - ID4_ SINE ID -1 82 3 7 1567 617 263 66 0 chr4 128787147 128787284 -26842836 - B1_Mur1 SINE Alu -3 146 1 7 1567 435 52 0 0 chr4 128788973 128789031 -26841089 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1567 240 246 0 0 chr4 128789855 128789912 -26840208 + C-rich Low_complexity Low_complexity 1 57 0 7 1567 940 128 8 0 chr4 128791481 128791614 -26838506 - B1_Mus2 SINE Alu -12 135 2 7 1567 1413 161 0 9 chr4 128791746 128791971 -26838149 - URR1A DNA MER1_type 0 226 4 7 1567 332 288 84 7 chr4 128792002 128792156 -26837964 + MIRb SINE MIR 25 190 -78 7 1567 21 0 0 0 chr4 128792583 128792604 -26837516 + AT_rich Low_complexity Low_complexity 1 21 0 7 1567 3172 148 14 4 chr4 128792963 128793479 -26836641 - RLTR28 LTR ERVL 0 524 4 7 1567 504 286 28 21 chr4 128793568 128793711 -26836409 + RSINE1 SINE B4 5 148 -17 7 1567 750 121 0 0 chr4 128793802 128793918 -26836202 + (GAA)n Simple_repeat Simple_repeat 3 118 0 7 1567 225 324 48 0 chr4 128794432 128794537 -26835583 + MIRb SINE MIR 77 186 -82 7 1567 288 0 0 0 chr4 128794560 128794592 -26835528 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 7 1567 470 237 17 17 chr4 128794597 128794713 -26835407 + PB1D10 SINE Alu 1 116 -1 7 1567 392 267 126 67 chr4 128794714 128794800 -26835320 + L1MC4 LINE L1 7536 7620 -422 7 1567 687 214 27 20 chr4 128794800 128794948 -26835172 + B1_Mur1 SINE Alu 1 149 0 7 1567 392 267 126 67 chr4 128794948 128795146 -26834974 + L1MC4 LINE L1 7621 7837 -205 7 1567 409 245 21 11 chr4 128795312 128795407 -26834713 - ID_B1 SINE B4 -12 212 117 7 1567 215 308 47 0 chr4 128796309 128796393 -26833727 - MIRc SINE MIR -115 153 69 7 1567 213 283 0 0 chr4 128796554 128796607 -26833513 + MIR SINE MIR 23 75 -187 7 1567 596 137 10 10 chr4 128796631 128796734 -26833386 - B1_Mur4 SINE Alu 0 150 48 7 1567 271 56 0 0 chr4 128796763 128796799 -26833321 - U2 snRNA snRNA -152 36 1 7 1567 430 267 107 0 chr4 128796799 128796949 -26833171 + MIR SINE MIR 94 259 -3 7 1567 198 174 0 0 chr4 128799336 128799382 -26830738 + C-rich Low_complexity Low_complexity 1 46 0 7 1567 915 142 35 7 chr4 128801161 128801303 -26828817 + B1_Mus1 SINE Alu 1 146 -2 7 1567 1382 73 11 0 chr4 128801309 128801486 -26828634 + B2_Mm1t SINE B2 1 179 -14 7 1567 299 49 0 0 chr4 128801520 128801561 -26828559 + B2_Mm2 SINE B2 61 101 -94 7 1567 24 0 0 0 chr4 128801590 128801614 -26828506 + AT_rich Low_complexity Low_complexity 1 24 0 7 1567 349 282 76 25 chr4 128801700 128801887 -26828233 - MIRb SINE MIR -31 237 31 7 1567 444 216 61 0 chr4 128803833 128803947 -26826173 - B1F SINE Alu 0 120 1 7 1567 195 42 0 0 chr4 128804047 128804071 -26826049 + (TTG)n Simple_repeat Simple_repeat 2 25 0 7 1567 414 229 52 0 chr4 128804073 128804169 -26825951 - B1_Mur2 SINE Alu -9 140 40 7 1567 1067 123 7 0 chr4 128804301 128804447 -26825673 + B1_Mur3 SINE Alu 1 147 -2 7 1567 369 0 0 0 chr4 128804470 128804511 -26825609 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1567 278 269 142 19 chr4 128804537 128804643 -26825477 - RSINE1 SINE B4 -43 122 4 7 1567 383 308 53 0 chr4 128804658 128804676 -26825444 + B1F SINE Alu 4 143 -6 7 1567 497 296 0 0 chr4 128804676 128804791 -26825329 + ID_B1 SINE B4 104 218 -6 7 1567 235 217 0 92 chr4 128804804 128804880 -26825240 + B4 SINE B4 3 71 -221 7 1567 244 310 0 0 chr4 128804824 128804882 -26825238 + ID4_ SINE ID 15 72 -11 7 1567 969 125 0 0 chr4 128804884 128805036 -26825084 + (TG)n Simple_repeat Simple_repeat 2 153 0 7 1567 222 149 0 0 chr4 128805051 128805084 -26825036 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1567 1264 27 7 0 chr4 128805084 128805230 -26824890 - B1_Mus2 SINE Alu 0 147 1 7 1567 222 149 0 0 chr4 128805230 128805243 -26824877 + (T)n Simple_repeat Simple_repeat 1 13 0 7 1567 186 103 0 0 chr4 128805545 128805574 -26824546 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1567 243 254 32 27 chr4 128805706 128805826 -26824294 - MIR SINE MIR -117 151 31 7 1567 318 354 139 12 chr4 128806395 128806561 -26823559 - MIRb SINE MIR -59 209 23 7 1567 396 0 0 0 chr4 128806607 128806651 -26823469 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1567 438 242 81 87 chr4 128806999 128807171 -26822949 + ID_B1 SINE B4 1 171 -53 7 1567 383 178 98 22 chr4 128807095 128807187 -26822933 + PB1D10 SINE Alu 11 109 -8 7 1567 209 316 12 25 chr4 128807272 128807353 -26822767 - MIR SINE MIR -66 196 117 7 1567 206 237 0 13 chr4 128808013 128808090 -26822030 + CT-rich Low_complexity Low_complexity 2 77 0 7 1567 245 307 85 11 chr4 128808109 128808240 -26821880 - MIR SINE MIR -86 182 43 7 1567 332 287 67 27 chr4 128808575 128808782 -26821338 + L2a LINE L2 2918 3140 -286 7 1567 925 265 14 0 chr4 128808872 128809083 -26821037 - ID_B1 SINE B4 -9 215 2 7 1567 752 180 0 17 chr4 128809115 128809296 -26820824 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 1567 1004 204 5 38 chr4 128809298 128809507 -26820613 - B3 SINE B2 -14 202 1 7 1567 246 321 168 0 chr4 128809939 128810070 -26820050 + MIRb SINE MIR 81 233 -35 7 1567 3394 144 34 79 chr4 128810147 128810484 -26819636 + RMER6A LTR ERVK 1 365 -325 7 1567 1185 68 0 7 chr4 128810484 128810632 -26819488 - B1_Mus2 SINE Alu 0 147 1 7 1567 3394 137 16 82 chr4 128810632 128811057 -26819063 + RMER6A LTR ERVK 354 756 0 7 1567 232 350 90 0 chr4 128811111 128811211 -26818909 + MIRc SINE MIR 30 138 -130 7 1567 877 114 7 7 chr4 128811356 128811497 -26818623 + B1_Mus1 SINE Alu 8 148 0 8 1567 237 98 0 0 chr4 128811497 128811538 -26818582 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1567 210 254 91 0 chr4 128811783 128811838 -26818282 + L2a LINE L2 3367 3426 0 7 1567 210 200 22 0 chr4 128811842 128811887 -26818233 - L2b LINE L2 -1 3374 3329 8 1567 305 117 17 0 chr4 128812810 128812870 -26817250 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1567 261 0 0 0 chr4 128813807 128813836 -26816284 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1567 25 75 0 0 chr4 128814085 128814138 -26815982 + GC_rich Low_complexity Low_complexity 1 53 0 8 1567 375 105 0 0 chr4 128814145 128814202 -26815918 + (CCG)n Simple_repeat Simple_repeat 3 59 0 8 1567 200 154 37 37 chr4 128814234 128814288 -26815832 + (CGGGG)n Simple_repeat Simple_repeat 4 57 0 8 1567 212 224 16 65 chr4 128816101 128816163 -26813957 + ID_B1 SINE B4 81 139 -85 8 1567 257 283 76 50 chr4 128816348 128816467 -26813653 + MIRc SINE MIR 32 153 -115 8 1567 188 312 147 14 chr4 128817585 128817728 -26812392 + L2c LINE L2 3186 3347 -40 8 1567 816 212 40 45 chr4 128817875 128818073 -26812047 + B3A SINE B2 2 198 0 8 1567 276 242 136 90 chr4 128818872 128819049 -26811071 + MIRb SINE MIR 70 254 -14 8 1567 180 0 0 0 chr4 128819636 128819656 -26810464 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1567 279 0 0 0 chr4 128820542 128820573 -26809547 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1567 180 349 9 44 chr4 128820602 128820716 -26809404 + L3 LINE CR1 2119 2228 -2261 8 1567 202 175 50 0 chr4 128821274 128821314 -26808806 + CT-rich Low_complexity Low_complexity 4 45 0 8 1567 226 159 0 43 chr4 128821457 128821503 -26808617 + MIRm SINE MIR 232 275 -1 8 1567 230 27 81 0 chr4 128823132 128823169 -26806951 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1567 296 259 27 98 chr4 128823464 128823648 -26806472 + RMER17D LTR ERVK 382 552 -337 8 1567 486 0 0 0 chr4 128823919 128823973 -26806147 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1567 428 266 34 42 chr4 128823982 128824100 -26806020 + PB1D10 SINE Alu 1 117 0 8 1567 1746 21 0 0 chr4 128824367 128824560 -26805560 + B2_Mm1a SINE B2 1 193 0 8 1567 1457 52 0 85 chr4 128824585 128824796 -26805324 + B2_Mm1a SINE B2 1 193 0 8 1567 690 121 94 24 chr4 128826228 128826355 -26803765 + B1_Mur3 SINE Alu 1 136 -13 8 1567 370 257 0 38 chr4 128826364 128826469 -26803651 + ID_B1 SINE B4 122 222 -2 8 1567 212 0 36 0 chr4 128826545 128826573 -26803547 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1567 278 255 8 102 chr4 128826601 128826719 -26803401 + MT2B LTR ERVL 161 267 -334 8 1567 699 168 21 35 chr4 128826614 128826756 -26803364 + B1_Mur3 SINE Alu 10 149 0 8 1567 1087 71 7 0 chr4 128828432 128828572 -26801548 + B1_Mus1 SINE Alu 1 141 -7 8 1567 507 209 43 70 chr4 128828883 128829068 -26801052 + RNLTR23 LTR ERVK 463 642 0 8 1567 468 190 53 79 chr4 128829068 128829160 -26800960 - B1_Mur2 SINE Alu -60 89 1 8 1567 289 194 80 70 chr4 128829333 128829433 -26800687 + PB1D10 SINE Alu 1 101 -16 8 1567 639 181 17 8 chr4 128829674 128829791 -26800329 + PB1D9 SINE Alu 1 118 -2 8 1567 258 197 0 47 chr4 128829943 128830002 -26800118 + PB1D7 SINE Alu 1 56 -64 8 1567 534 267 23 8 chr4 128830002 128830134 -26799986 + RSINE1 SINE B4 3 136 -29 8 1567 225 358 71 33 chr4 128830257 128830468 -26799652 - MIRb SINE MIR -48 220 2 8 1567 240 300 0 114 chr4 128830558 128830668 -26799452 - B1F SINE Alu -27 122 26 8 1567 1160 28 35 7 chr4 128830673 128830815 -26799305 - B1_Mm SINE Alu 0 147 2 8 1567 1235 54 0 0 chr4 128831043 128831191 -26798929 + B1_Mus1 SINE Alu 1 148 0 8 1567 267 31 0 0 chr4 128831191 128831223 -26798897 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1567 386 287 14 72 chr4 128831360 128831378 -26798742 - ID_B1 SINE B4 -27 197 186 8 1567 255 31 0 0 chr4 128831378 128831410 -26798710 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1567 608 164 10 2 chr4 128831410 128831512 -26798608 - B1_Mur4 SINE Alu -42 107 6 8 1567 386 292 21 65 chr4 128831512 128831545 -26798575 - ID_B1 SINE B4 -99 193 53 8 1567 191 128 51 0 chr4 128831585 128831624 -26798496 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 8 1567 438 270 174 7 chr4 128831640 128831778 -26798342 - RSINE1 SINE B4 0 165 5 8 1567 374 259 27 27 chr4 128831807 128831918 -26798202 + PB1D10 SINE Alu 6 116 -1 8 1567 900 203 0 7 chr4 128831933 128832082 -26798038 - B1_Mur1 SINE Alu 0 149 2 8 1567 488 256 99 28 chr4 128832245 128832386 -26797734 + RSINE1 SINE B4 2 152 -13 8 1567 1356 189 118 17 chr4 128833391 128833740 -26796380 - ORR1C2 LTR MaLR 0 384 1 8 1567 764 179 13 27 chr4 128833993 128834142 -26795978 + B1_Mur3 SINE Alu 2 148 -1 8 1567 188 32 0 88 chr4 128834185 128834219 -26795901 + (TATG)n Simple_repeat Simple_repeat 1 31 0 8 1567 499 287 35 0 chr4 128834219 128834334 -26795786 - B3 SINE B2 -63 153 35 8 1567 705 70 254 0 chr4 128834902 128835016 -26795104 - B1_Mus2 SINE Alu -2 145 3 8 1567 798 260 80 0 chr4 128836160 128836360 -26793760 + B3 SINE B2 1 216 0 8 1567 272 279 205 26 chr4 128836452 128836603 -26793517 - MER5A DNA MER1_type 0 189 12 8 1567 339 148 0 0 chr4 128836637 128836691 -26793429 - B1_Mus2 SINE Alu -61 86 33 8 1567 208 0 62 0 chr4 128836974 128837006 -26793114 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1567 1153 75 0 0 chr4 128837006 128837144 -26792976 - B1_Mus2 SINE Alu -8 139 2 8 1567 679 227 7 0 chr4 128837329 128837470 -26792650 - B1_Mur1 SINE Alu -1 148 7 8 1567 1085 82 0 39 chr4 128837497 128837650 -26792470 - B1_Mus1 SINE Alu -1 147 1 8 1567 390 328 62 8 chr4 128837981 128838110 -26792010 + RSINE1 SINE B4 3 138 -27 8 1567 425 34 17 0 chr4 128838133 128838192 -26791928 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1567 684 265 54 15 chr4 128838223 128838426 -26791694 + B4 SINE B4 81 291 -1 8 1567 622 243 66 0 chr4 128838473 128838609 -26791511 - B1_Mur1 SINE Alu -3 146 2 8 1567 288 237 161 0 chr4 128838650 128838743 -26791377 - PB1D10 SINE Alu -6 111 4 8 1567 666 169 2 1 chr4 128839322 128839447 -26790673 + B1_Mus1 SINE Alu 21 148 0 8 1567 375 134 37 0 chr4 128839447 128839529 -26790591 + G-rich Low_complexity Low_complexity 4 88 0 8 1567 22 0 0 0 chr4 128839656 128839678 -26790442 + AT_rich Low_complexity Low_complexity 1 22 0 8 1567 1223 27 7 7 chr4 128839690 128839837 -26790283 + B1_Mus1 SINE Alu 1 147 -1 8 1567 265 309 0 0 chr4 128840010 128840078 -26790042 + PB1 SINE Alu 33 100 -27 8 1567 183 314 0 0 chr4 128840097 128840148 -26789972 - MIR SINE MIR -133 129 79 8 1567 563 172 73 107 chr4 128840330 128840480 -26789640 - B1_Mm SINE Alu -1 146 2 8 1567 550 167 81 73 chr4 128840504 128840640 -26789480 + B1_Mur3 SINE Alu 12 148 -1 8 1567 231 226 126 21 chr4 128840817 128840912 -26789208 - MIRb SINE MIR -129 139 35 8 1567 1197 173 19 5 chr4 128841254 128841463 -26788657 + B3 SINE B2 5 216 0 8 1567 411 242 91 0 chr4 128842002 128842101 -26788019 - B4A SINE B4 -71 221 114 8 1567 221 342 0 14 chr4 128842230 128842304 -26787816 + ID4_ SINE ID 1 73 -10 8 1567 396 0 0 0 chr4 128842320 128842364 -26787756 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1567 904 155 0 20 chr4 128842443 128842594 -26787526 + B1_Mur1 SINE Alu 2 149 0 8 1567 701 178 260 0 chr4 128842644 128842813 -26787307 + B3 SINE B2 1 213 -3 8 1567 250 243 108 0 chr4 128842835 128842909 -26787211 + L1MC LINE L1 2984 3065 -3081 8 1567 239 227 0 15 chr4 128842913 128842980 -26787140 + T-rich Low_complexity Low_complexity 5 70 0 8 1567 699 65 0 0 chr4 128842980 128843073 -26787047 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 8 1567 824 62 0 0 chr4 128843073 128843185 -26786935 - B1_Mus1 SINE Alu -19 129 18 8 1567 549 245 14 20 chr4 128843256 128843402 -26786718 + RSINE1 SINE B4 20 164 -1 8 1567 581 221 16 16 chr4 128843610 128843739 -26786381 - B1_Mur2 SINE Alu -20 129 1 8 195 510 282 8 15 chr4 128843758 128843891 -26786229 + RSINE1 SINE B4 6 137 -28 8 1568 639 253 111 43 chr4 128844109 128844704 -26785416 + L1MB2 LINE L1 3843 4529 -1617 8 1568 417 211 11 0 chr4 128844712 128844802 -26785318 + ID_B1 SINE B4 134 224 0 8 1568 1452 53 37 11 chr4 128844804 128844993 -26785127 + B2_Mm2 SINE B2 1 194 -1 8 1568 213 39 0 0 chr4 128845074 128845100 -26785020 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1568 437 298 121 63 chr4 128845170 128845517 -26784603 + L1M5 LINE L1 3812 4178 -1968 8 1568 345 194 101 55 chr4 128845553 128845662 -26784458 + PB1D9 SINE Alu 6 119 -1 8 1568 423 275 17 62 chr4 128845732 128845769 -26784351 + ID_B1 SINE B4 54 223 -1 8 1568 659 196 21 21 chr4 128845769 128845910 -26784210 + B1_Mus2 SINE Alu 7 147 0 8 1568 341 299 54 83 chr4 128845921 128846125 -26783995 + B4A SINE B4 95 292 0 8 1568 816 190 7 0 chr4 128846170 128846312 -26783808 - B1_Mur2 SINE Alu -6 143 1 8 1568 278 316 13 0 chr4 128846326 128846405 -26783715 + RSINE1 SINE B4 80 159 -6 8 1568 275 235 110 12 chr4 128846642 128846724 -26783396 + L1MB2 LINE L1 5573 5662 -509 8 1568 648 266 0 20 chr4 128846729 128846875 -26783245 + B1F SINE Alu 7 149 0 8 1568 702 272 82 33 chr4 128846969 128847078 -26783042 + L1MB2 LINE L1 5782 5908 -263 8 1568 1367 76 49 0 chr4 128847078 128847263 -26782857 + B2_Mm2 SINE B2 1 194 -1 9 1568 702 266 108 46 chr4 128847263 128847460 -26782660 + L1MB2 LINE L1 5908 6106 -74 8 1568 265 230 11 15 chr4 128847498 128847585 -26782535 + L1MC4 LINE L1 6890 7002 -1040 9 1568 992 209 42 5 chr4 128847597 128847789 -26782331 + B3 SINE B2 1 199 -17 9 1568 309 140 0 0 chr4 128847908 128847958 -26782162 + Lx8 LINE L1 7420 7469 -4 9 1568 247 302 28 19 chr4 128848044 128848152 -26781968 + L1MC4 LINE L1 7199 7307 -735 9 1568 1184 61 0 7 chr4 128848458 128848607 -26781513 + B1_Mus1 SINE Alu 1 148 0 9 1568 741 123 146 0 chr4 128848651 128848781 -26781339 + B1_Mur3 SINE Alu 1 149 0 9 1568 492 238 93 6 chr4 128848846 128849007 -26781113 + L1M5 LINE L1 5581 5755 -369 9 1568 21 0 0 0 chr4 128849033 128849054 -26781066 + AT_rich Low_complexity Low_complexity 1 21 0 9 1568 1256 58 102 23 chr4 128849060 128849237 -26780883 - B2_Mm1a SINE B2 -1 192 2 9 1568 213 167 58 77 chr4 128849246 128849258 -26780862 - PB1D7 SINE Alu -1 119 69 9 1568 255 150 0 0 chr4 128849258 128849298 -26780822 - ID_B1 SINE B4 -9 215 176 9 1568 980 195 53 5 chr4 128849663 128849693 -26780427 - B3 SINE B2 0 216 178 9 1568 1232 171 13 18 chr4 128849693 128849919 -26780201 + URR1B DNA MER1_type 1 225 0 9 1568 980 195 53 5 chr4 128849919 128850094 -26780026 - B3 SINE B2 -39 177 1 9 1568 389 268 105 35 chr4 128850140 128850283 -26779837 - RSINE1 SINE B4 -10 155 3 9 1568 841 112 16 0 chr4 128850305 128850430 -26779690 + B1_Mur4 SINE Alu 1 127 -23 9 1568 248 277 0 30 chr4 128850567 128850634 -26779486 + PB1D7 SINE Alu 55 119 -1 9 1568 696 170 303 0 chr4 128850637 128850802 -26779318 + B3 SINE B2 1 215 -1 9 1568 1479 150 92 113 chr4 128850910 128851292 -26778828 + ORR1D1 LTR MaLR 1 374 0 9 1568 422 251 52 129 chr4 128851295 128851505 -26778615 + ID_B1 SINE B4 7 200 -24 9 1568 554 180 9 9 chr4 128851446 128851558 -26778562 + B1F2 SINE Alu 35 146 -3 9 1568 222 254 70 0 chr4 128851557 128851628 -26778492 + B1F1 SINE Alu 68 143 -6 9 1568 830 266 73 40 chr4 128851703 128851977 -26778143 + B4A SINE B4 3 285 -7 9 1568 459 0 0 0 chr4 128852075 128852126 -26777994 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1568 1499 53 16 16 chr4 128852393 128852583 -26777537 + B2_Mm2 SINE B2 1 190 -5 9 1568 1113 89 14 0 chr4 128852758 128852904 -26777216 + B1_Mus1 SINE Alu 1 148 0 9 1568 749 180 22 0 chr4 128852955 128853094 -26777026 + B1_Mus2 SINE Alu 1 142 -5 9 1568 646 252 37 73 chr4 128853131 128853349 -26776771 - B3 SINE B2 -6 210 1 9 1568 645 248 72 20 chr4 128853565 128853717 -26776403 + RSINE1 SINE B4 6 165 0 9 1568 330 302 102 114 chr4 128853939 128854104 -26776016 + LTR83 LTR ERVL 303 455 -325 9 1568 1177 81 0 0 chr4 128854104 128854252 -26775868 + B1_Mus1 SINE Alu 1 148 0 9 1568 330 302 102 114 chr4 128854252 128854419 -26775701 + LTR83 LTR ERVL 456 631 -149 9 1568 180 0 0 0 chr4 128855912 128855932 -26774188 + (G)n Simple_repeat Simple_repeat 1 20 0 9 1568 185 245 0 39 chr4 128855945 128855996 -26774124 - L2 LINE L2 -1391 2028 1980 9 1568 779 222 162 0 chr4 128856128 128856313 -26773807 + B3 SINE B2 1 215 -1 9 1568 1456 32 35 80 chr4 128856313 128856429 -26773691 + B2_Mm1a SINE B2 2 116 -77 9 1568 1662 16 0 45 chr4 128856429 128856609 -26773511 + B2_Mm1a SINE B2 1 178 -15 9 1568 219 36 0 0 chr4 128856609 128856637 -26773483 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1568 1662 16 0 45 chr4 128856637 128856658 -26773462 + B2_Mm1a SINE B2 179 193 0 9 1568 1456 32 35 80 chr4 128856658 128856742 -26773378 + B2_Mm1a SINE B2 117 193 0 9 1568 220 339 66 33 chr4 128857196 128857318 -26772802 - MIRc SINE MIR -57 211 86 9 1568 261 57 0 0 chr4 128857520 128857555 -26772565 + (TTG)n Simple_repeat Simple_repeat 2 36 0 9 1568 787 182 7 0 chr4 128857678 128857815 -26772305 - B1_Mur4 SINE Alu -10 140 3 9 1568 223 306 153 0 chr4 128857989 128858061 -26772059 + ID4 SINE ID 1 83 0 9 1568 431 278 26 9 chr4 128858090 128858206 -26771914 + B1F SINE Alu 1 118 -31 9 1568 228 361 0 0 chr4 128858295 128858356 -26771764 + tRNA-Ala-GCY_ tRNA tRNA 3 63 -12 9 1568 228 387 0 0 chr4 128858356 128858370 -26771750 + ID4_ SINE ID 9 83 0 9 1568 798 169 28 0 chr4 128858379 128858521 -26771599 + B1_Mus2 SINE Alu 2 147 0 9 1568 1255 74 72 22 chr4 128858708 128858888 -26771232 - B2_Mm2 SINE B2 -4 191 3 9 1568 293 307 164 38 chr4 128859977 128860295 -26769825 + L1MC LINE L1 5495 5852 -2030 9 1568 428 244 39 31 chr4 128860437 128860564 -26769556 - B1F SINE Alu -9 140 13 9 1568 456 139 0 0 chr4 128860570 128860649 -26769471 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1568 25 31 0 0 chr4 128860649 128860681 -26769439 + AT_rich Low_complexity Low_complexity 1 32 0 9 1568 477 198 89 0 chr4 128860720 128860821 -26769299 + PB1D9 SINE Alu 11 120 0 9 1568 243 226 174 28 chr4 128861214 128861323 -26768797 + MIR3 SINE MIR 30 154 -54 9 1568 330 247 33 56 chr4 128861594 128861684 -26768436 - ID_B1 SINE B4 -108 116 29 9 1568 514 231 85 0 chr4 128861683 128861813 -26768307 - ID_B1 SINE B4 -3 221 81 9 1568 881 117 13 65 chr4 128861830 128861985 -26768135 - B1_Mur3 SINE Alu -1 148 2 9 1568 550 133 51 0 chr4 128861988 128862086 -26768034 - B1_Mus2 SINE Alu 0 147 45 9 1568 249 162 107 93 chr4 128862146 128862221 -26767899 + B1_Mus2 SINE Alu 61 136 -11 9 1568 521 149 0 0 chr4 128862616 128862710 -26767410 + B1_Mur3 SINE Alu 33 126 -23 9 1568 294 51 0 0 chr4 128862710 128862749 -26767371 + B1_Mm SINE Alu 96 134 -13 9 1568 180 0 0 0 chr4 128862749 128862769 -26767351 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 9 1568 504 196 406 13 chr4 128862945 128863100 -26767020 + B3 SINE B2 1 216 0 9 1568 32 0 0 0 chr4 128863289 128863321 -26766799 + AT_rich Low_complexity Low_complexity 1 32 0 9 1568 414 238 57 0 chr4 128863407 128863512 -26766608 - ID_B1 SINE B4 -11 213 103 9 1568 1120 95 0 0 chr4 128863733 128863880 -26766240 + B1_Mm SINE Alu 1 147 0 9 1568 359 138 46 0 chr4 128864017 128864082 -26766038 - B1_Mur1 SINE Alu -8 141 74 9 1568 723 217 0 0 chr4 128864086 128864224 -26765896 + B1_Mur1 SINE Alu 5 142 -7 9 1568 276 331 8 31 chr4 128864732 128864860 -26765260 + ID_B1 SINE B4 80 204 -20 9 1568 586 225 42 14 chr4 128864934 128865078 -26765042 + B1_Mur1 SINE Alu 2 149 0 9 1568 529 250 64 7 chr4 128867732 128867860 -26762260 + B3A SINE B2 3 139 -59 9 1568 293 0 27 0 chr4 128867860 128867897 -26762223 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1568 529 250 64 7 chr4 128867897 128867909 -26762211 + B3A SINE B2 140 151 -47 9 1568 568 269 0 21 chr4 128868329 128868473 -26761647 + B1F2 SINE Alu 3 143 -6 9 1568 463 281 8 8 chr4 128868594 128868723 -26761397 + ID_B1 SINE B4 96 224 0 9 1568 330 326 7 7 chr4 128868958 128869094 -26761026 + C-rich Low_complexity Low_complexity 3 138 0 9 1568 433 238 75 203 chr4 128869354 128869435 -26760685 + B3A SINE B2 1 63 -135 9 1568 1375 95 26 0 chr4 128869435 128869624 -26760496 - B2_Mm2 SINE B2 0 195 2 9 1568 433 238 75 203 chr4 128869624 128869769 -26760351 + B3A SINE B2 64 198 0 9 1568 239 216 12 75 chr4 128869932 128870012 -26760108 - L1M4 LINE L1 -356 5822 5748 9 1568 201 163 0 0 chr4 128870024 128870073 -26760047 + T-rich Low_complexity Low_complexity 1 49 0 9 1568 480 223 26 69 chr4 128870082 128870328 -26759792 - RLTR40 LTR ERVK -47 770 485 9 1568 604 220 210 27 chr4 128870410 128870436 -26759684 - RLTR40 LTR ERVK -489 328 303 9 1568 414 100 0 0 chr4 128870436 128870496 -26759624 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1568 604 220 210 27 chr4 128870496 128870731 -26759389 - RLTR40 LTR ERVK -515 302 21 9 1568 523 205 76 8 chr4 128870812 128870930 -26759190 + B3A SINE B2 36 161 -37 9 1568 381 43 0 0 chr4 128870934 128870981 -26759139 + (CATA)n Simple_repeat Simple_repeat 2 48 0 9 1568 496 227 9 43 chr4 128871144 128871259 -26758861 - ID_B1 SINE B4 -111 113 3 9 1568 3592 199 33 75 chr4 128871456 128872516 -26757604 - ORR1A3-int LTR MaLR -947 1016 1 9 1568 607 105 11 0 chr4 128872516 128872611 -26757509 - ORR1A3 LTR MaLR 0 326 231 9 1568 632 151 45 151 chr4 128872921 128873100 -26757020 - B2_Mm2 SINE B2 -35 160 1 9 1568 285 227 157 11 chr4 128873297 128873386 -26756734 + ID_B1 SINE B4 31 132 -92 9 1568 339 131 213 21 chr4 128873341 128873435 -26756685 + PB1D10 SINE Alu 6 117 0 9 1568 586 229 155 11 chr4 128873631 128873812 -26756308 + B3 SINE B2 1 207 -9 9 1568 1290 70 35 0 chr4 128875370 128875542 -26754578 + B2_Mm1t SINE B2 2 179 -14 9 1568 224 70 279 0 chr4 128875574 128875617 -26754503 + B2_Mm2 SINE B2 47 101 -94 9 1568 21 36 0 0 chr4 128875641 128875669 -26754451 + AT_rich Low_complexity Low_complexity 1 28 0 9 1568 499 162 40 0 chr4 128875700 128875799 -26754321 + B1_Mus1 SINE Alu 1 103 -45 9 1568 881 201 84 20 chr4 128875808 128876011 -26754109 + B3 SINE B2 1 216 0 9 1568 1121 66 0 0 chr4 128876072 128876209 -26753911 + B1_Mus1 SINE Alu 1 137 -11 9 1568 1284 98 4 0 chr4 128876209 128876485 -26753635 + (GAAA)n Simple_repeat Simple_repeat 1 276 0 9 1568 215 188 41 20 chr4 128876523 128876572 -26753548 + B4A SINE B4 85 134 -158 9 1568 242 304 0 0 chr4 128876586 128876642 -26753478 + tRNA-Ala-GCG tRNA tRNA 16 71 -4 9 1568 415 287 99 15 chr4 128876810 128876941 -26753179 + B1_Mur1 SINE Alu 1 142 -7 9 1568 24 32 0 0 chr4 128876941 128876972 -26753148 + AT_rich Low_complexity Low_complexity 1 31 0 9 1568 783 156 216 12 chr4 128877463 128877625 -26752495 - B3 SINE B2 -19 197 3 9 1568 24 0 0 0 chr4 128877648 128877672 -26752448 + AT_rich Low_complexity Low_complexity 1 24 0 9 1568 860 190 201 0 chr4 128878173 128878352 -26751768 - B3 SINE B2 0 216 2 9 1568 260 232 0 18 chr4 128878514 128878571 -26751549 + PB1D9 SINE Alu 64 119 -1 1 1568 365 211 21 62 chr4 128878582 128878678 -26751442 + B1_Mur2 SINE Alu 47 138 -11 1 1568 848 189 0 0 chr4 128878825 128878968 -26751152 + B1_Mur2 SINE Alu 5 147 -2 1 1568 233 261 15 0 chr4 128878982 128879047 -26751073 + PB1 SINE Alu 41 106 -21 1 1568 278 326 6 102 chr4 128879064 128879221 -26750899 + ID_B1 SINE B4 14 155 -69 1 1568 481 222 19 39 chr4 128879245 128879348 -26750772 - B3 SINE B2 -115 101 1 1 1568 723 193 0 35 chr4 128879469 128879614 -26750506 + B1_Mur4 SINE Alu 11 150 0 1 1568 1397 56 28 6 chr4 128879751 128879931 -26750189 - B2_Mm2 SINE B2 -10 185 2 1 1568 227 250 11 87 chr4 128880053 128880145 -26749975 + B4A SINE B4 67 151 -141 1 1568 200 130 0 36 chr4 128880284 128880340 -26749780 + T-rich Low_complexity Low_complexity 2 55 0 1 1568 1296 56 64 37 chr4 128880369 128880556 -26749564 - B2_Mm2 SINE B2 -3 192 1 1 1568 258 274 14 14 chr4 128880727 128880801 -26749319 - RLTR24 LTR ERV1 -454 75 2 1 1568 406 254 117 52 chr4 128880801 128880933 -26749187 + B4A SINE B4 151 292 0 1 1568 804 172 35 25 chr4 128880960 128881144 -26748976 - B3 SINE B2 -8 187 1 1 1568 1208 54 0 0 chr4 128881423 128881570 -26748550 - B1_Mus1 SINE Alu 0 148 2 1 1568 489 241 112 8 chr4 128881596 128881730 -26748390 - B1_Mur1 SINE Alu -1 148 1 1 1568 452 269 51 29 chr4 128881737 128881875 -26748245 - B1F2 SINE Alu -7 142 2 1 1568 288 279 131 8 chr4 128882124 128882254 -26747866 + L2b LINE L2 3214 3359 -16 1 1568 365 283 21 11 chr4 128882324 128882417 -26747703 - B1F SINE Alu -41 108 15 1 1568 1213 54 0 0 chr4 128882490 128882637 -26747483 + B1_Mus2 SINE Alu 1 147 0 1 1568 427 303 0 9 chr4 128882681 128882791 -26747329 + RSINE1 SINE B4 5 113 -52 1 1568 280 221 0 128 chr4 128882966 128883044 -26747076 - PB1D10 SINE Alu -17 100 33 1 1568 544 225 273 17 chr4 128883885 128884057 -26746063 - B3 SINE B2 0 216 1 1 1568 737 287 28 24 chr4 128884323 128884612 -26745508 + B4A SINE B4 2 291 -1 1 1568 408 262 30 53 chr4 128884753 128884886 -26745234 - B1F2 SINE Alu -18 131 2 1 1568 847 238 74 0 chr4 128884899 128885101 -26745019 - ID_B1 SINE B4 -6 218 2 1 1568 220 200 0 0 chr4 128885320 128885360 -26744760 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1568 216 279 29 0 chr4 128885436 128885504 -26744616 - ID4_ SINE ID -9 74 5 1 1568 503 222 135 27 chr4 128885513 128885661 -26744459 - RSINE1 SINE B4 0 165 2 1 1568 232 250 75 45 chr4 128885898 128885965 -26744155 + B1F1 SINE Alu 2 70 -79 1 1568 223 188 83 0 chr4 128885963 128886011 -26744109 - RSINE1 SINE B4 -113 52 1 1 1568 630 87 0 0 chr4 128886076 128886168 -26743952 + BC1_Mm scRNA scRNA 4 95 -57 1 1568 820 98 106 0 chr4 128886177 128886309 -26743811 + B1_Mus1 SINE Alu 2 147 -1 1 1568 712 244 54 0 chr4 128886342 128886510 -26743610 + B3A SINE B2 5 181 -17 1 1568 216 97 0 0 chr4 128886513 128886544 -26743576 + (TGGG)n Simple_repeat Simple_repeat 1 31 0 1 1568 648 320 71 0 chr4 128886553 128886750 -26743370 + ID_B1 SINE B4 14 224 0 1 1568 252 200 55 0 chr4 128886755 128886810 -26743310 + L1MD LINE L1 5110 5167 -979 1 1568 243 0 0 0 chr4 128887301 128887328 -26742792 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1568 1268 34 0 0 chr4 128887328 128887475 -26742645 - B1_Mm SINE Alu 0 147 1 1 1568 725 255 10 36 chr4 128888245 128888458 -26741662 + B3A SINE B2 8 203 -13 1 1568 493 216 20 0 chr4 128888460 128888562 -26741558 - PB1D9 SINE Alu -2 118 15 1 1568 1116 52 0 0 chr4 128888567 128888703 -26741417 + B1_Mus2 SINE Alu 3 138 -9 1 1568 240 35 0 0 chr4 128888703 128888732 -26741388 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1568 272 333 9 38 chr4 128889127 128889233 -26740887 + MER3 DNA MER1_type 36 138 -71 1 1568 699 121 177 0 chr4 128889483 128889607 -26740513 + B1_Mur4 SINE Alu 5 150 0 1 1568 386 89 0 12 chr4 128889733 128889842 -26740278 - B2_Mm2 SINE B2 -5 190 47 1 1568 1275 107 11 0 chr4 128889874 128890052 -26740068 - B2_Mm1t SINE B2 -13 180 1 1 1568 1747 47 0 0 chr4 128890061 128890275 -26739845 - L1Md_A LINE L1 0 6582 6369 1 1568 911 248 0 49 chr4 128890323 128890548 -26739572 - B3 SINE B2 0 216 3 1 1568 327 336 18 9 chr4 128890939 128891050 -26739070 + PB1D10 SINE Alu 2 113 -4 1 1568 346 159 43 0 chr4 128892375 128892444 -26737676 - RSINE1 SINE B4 -91 74 3 1 1568 437 170 330 0 chr4 128892874 128892986 -26737134 + B1_Mur2 SINE Alu 1 149 0 1 1568 1112 48 20 33 chr4 128892990 128893140 -26736980 + B1_Mus1 SINE Alu 1 148 0 1 1568 599 186 59 15 chr4 128893157 128893293 -26736827 + B1_Mus1 SINE Alu 2 143 -5 1 1568 441 258 69 15 chr4 128893343 128893473 -26736647 + B1F2 SINE Alu 2 138 -11 1 1568 596 276 120 0 chr4 128893483 128893675 -26736445 + ID_B1 SINE B4 9 223 -1 1 1568 636 291 23 64 chr4 128894095 128894359 -26735761 - BGLII_B LTR ERVK -184 257 5 1 1568 340 240 96 39 chr4 128895013 128895117 -26735003 + PB1D9 SINE Alu 2 111 -9 1 1568 319 282 71 24 chr4 128895446 128895476 -26734644 + MT2B LTR ERVL 125 160 -441 1 1568 421 117 139 69 chr4 128895476 128895577 -26734543 + B1_Mur2 SINE Alu 1 108 -41 1 1568 354 176 176 0 chr4 128896699 128896790 -26733330 + U13_ snRNA snRNA 1 107 -1 1 1568 889 279 9 9 chr4 128902073 128902283 -26727837 - ID_B1 SINE B4 -3 221 12 1 1568 181 333 45 97 chr4 128902827 128903003 -26727117 - MIR3 SINE MIR -39 169 3 1 1568 326 294 0 0 chr4 128905870 128905955 -26724165 + G-rich Low_complexity Low_complexity 5 89 0 1 1568 490 189 225 0 chr4 128906012 128906123 -26723997 + B1F1 SINE Alu 6 141 -8 1 1568 505 246 86 64 chr4 128906142 128906329 -26723791 + B3A SINE B2 4 194 -4 1 1568 285 71 0 0 chr4 128906426 128906439 -26723681 + (A)n Simple_repeat Simple_repeat 1 13 0 1 1568 1258 48 0 0 chr4 128906439 128906586 -26723534 + B1_Mus2 SINE Alu 1 147 0 1 1568 285 71 0 0 chr4 128906586 128906614 -26723506 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1568 566 184 0 18 chr4 128906649 128906760 -26723360 + B3 SINE B2 4 112 -104 1 1568 690 89 0 0 chr4 128907189 128907290 -26722830 + B1_Mur4 SINE Alu 50 150 0 1 1568 393 287 30 30 chr4 128907371 128907387 -26722733 - ID_B1 SINE B4 -8 216 84 1 1568 545 250 8 8 chr4 128907387 128907504 -26722616 - B1F1 SINE Alu -30 119 3 1 1568 783 149 119 0 chr4 128907548 128907682 -26722438 - B1_Mur4 SINE Alu 0 150 1 1 1568 398 176 14 0 chr4 128907698 128907772 -26722348 - ID_B1 SINE B4 -4 220 146 1 1568 535 234 0 0 chr4 128907802 128907913 -26722207 - RSINE1 SINE B4 -1 164 54 1 1568 444 262 87 0 chr4 128907954 128908080 -26722040 - ID_B1 SINE B4 -67 157 21 1 1568 196 227 75 85 chr4 128908111 128908268 -26721852 - MIRc SINE MIR -101 167 15 1 1568 190 344 41 51 chr4 128909892 128909990 -26720130 - MIRb SINE MIR -121 147 51 1 1568 222 286 95 0 chr4 128910603 128910666 -26719454 + B1F2 SINE Alu 6 74 -75 1 1568 570 226 76 56 chr4 128910677 128910874 -26719246 + B3 SINE B2 9 209 -7 1 1568 234 266 12 81 chr4 128910910 128910996 -26719124 + ID4 SINE ID 4 83 0 1 1568 1163 56 0 7 chr4 128911008 128911142 -26718978 + B1_Mm SINE Alu 2 135 -12 1 1568 684 24 0 0 chr4 128911142 128911224 -26718896 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 1 1568 1567 62 0 5 chr4 128911233 128911426 -26718694 + B2_Mm2 SINE B2 1 192 -3 1 1568 498 175 81 72 chr4 128911432 128911543 -26718577 + ID_B1 SINE B4 2 113 -111 1 1568 250 325 76 68 chr4 128911543 128911564 -26718556 + B3A SINE B2 2 134 -64 1 1568 376 223 55 47 chr4 128911755 128911882 -26718238 - MIRb SINE MIR -137 131 4 1 1568 210 261 135 59 chr4 128912012 128912140 -26717980 + MIRc SINE MIR 43 180 -28 1 1568 318 26 0 0 chr4 128912196 128912235 -26717885 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 1 1568 387 0 0 0 chr4 128912235 128912278 -26717842 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1568 402 234 351 42 chr4 128912315 128912464 -26717656 + B3 SINE B2 1 203 -13 1 1568 230 0 33 0 chr4 128912464 128912494 -26717626 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1568 402 234 351 42 chr4 128912494 128912509 -26717611 + B3 SINE B2 204 216 0 1 1568 213 367 38 38 chr4 128913279 128913412 -26716708 + MIRc SINE MIR 48 180 -88 1 1568 831 141 15 0 chr4 128913915 128914050 -26716070 + B1_Mur2 SINE Alu 12 148 -1 1 1568 234 229 0 0 chr4 128914394 128914442 -26715678 + B1F2 SINE Alu 1 48 -101 1 1568 200 259 56 0 chr4 128914806 128914860 -26715260 + MIRc SINE MIR 91 147 -121 1 1568 207 0 0 0 chr4 128914955 128914978 -26715142 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1568 21 36 0 0 chr4 128916385 128916413 -26713707 + GC_rich Low_complexity Low_complexity 1 28 0 1 1568 21 36 0 0 chr4 128916428 128916456 -26713664 + GC_rich Low_complexity Low_complexity 1 28 0 1 1568 487 338 24 24 chr4 128916859 128917065 -26713055 - MIRb SINE MIR 0 268 63 1 1568 346 279 63 32 chr4 128917916 128918042 -26712078 + RSINE1 SINE B4 3 132 -33 1 1568 582 15 0 0 chr4 128918222 128918289 -26711831 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1568 1385 62 17 6 chr4 128918290 128918467 -26711653 - B2_Mm2 SINE B2 -16 179 1 1 1568 414 0 0 0 chr4 128919168 128919214 -26710906 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1568 210 295 51 31 chr4 128920072 128920170 -26709950 - L2b LINE L2 -39 3336 3237 1 1568 465 229 8 71 chr4 128920368 128920442 -26709678 - ID_B1 SINE B4 -19 205 137 1 1568 234 116 0 0 chr4 128920442 128920485 -26709635 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1568 465 229 8 71 chr4 128920485 128920537 -26709583 - ID_B1 SINE B4 -88 136 87 1 1568 1024 68 54 0 chr4 128920666 128920814 -26709306 + B2_Mm1a SINE B2 5 160 -33 1 1568 189 0 0 0 chr4 128920814 128920835 -26709285 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1 1568 450 143 0 0 chr4 128920835 128920919 -26709201 + B2_Mm1a SINE B2 109 192 -1 1 1568 1177 62 0 0 chr4 128921265 128921411 -26708709 + B1_Mus1 SINE Alu 1 146 -2 1 1568 393 22 0 0 chr4 128921411 128921457 -26708663 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1568 661 258 10 91 chr4 128921789 128921998 -26708122 - ID_B1 SINE B4 -12 212 21 1 1568 186 300 23 70 chr4 128922465 128922551 -26707569 - MIRc SINE MIR -31 237 156 1 1568 443 202 90 10 chr4 128923109 128923209 -26706911 - PB1D10 SINE Alu -9 108 1 1 1568 188 259 34 17 chr4 128924657 128924716 -26705404 + MIR3 SINE MIR 98 157 -51 1 1568 37 109 0 0 chr4 128925521 128925677 -26704443 + GC_rich Low_complexity Low_complexity 1 156 0 1 1568 249 276 16 16 chr4 128925702 128925831 -26704289 + (CGG)n Simple_repeat Simple_repeat 2 130 0 1 1568 267 148 48 36 chr4 128925726 128925810 -26704310 + G-rich Low_complexity Low_complexity 6 90 0 1 1568 757 193 219 11 chr4 128927203 128927381 -26702739 + B3 SINE B2 2 216 0 1 1568 1187 298 12 75 chr4 128927392 128927794 -26702326 + Lx5 LINE L1 6656 7032 -18 1 1568 180 0 0 0 chr4 128927794 128927814 -26702306 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 1568 310 211 99 0 chr4 128927863 128927934 -26702186 + ID4 SINE ID 4 81 -2 1 1568 628 264 40 40 chr4 128927966 128928167 -26701953 + ID_B1 SINE B4 6 206 -18 1 1568 372 43 0 0 chr4 128929555 128929601 -26700519 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1568 1076 51 66 0 chr4 128929664 128929801 -26700319 + B1_Mus2 SINE Alu 2 147 0 1 1568 225 0 0 0 chr4 128929841 128929866 -26700254 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1568 486 266 5 156 chr4 128929866 128930071 -26700049 - ID_B1 SINE B4 -49 175 2 1 1568 235 122 20 20 chr4 128930094 128930144 -26699976 + T-rich Low_complexity Low_complexity 1 50 0 1 1568 352 35 53 0 chr4 128930158 128930215 -26699905 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 1 1568 835 163 42 7 chr4 128930215 128930348 -26699772 - B1_Mur4 SINE Alu -10 140 2 1 1568 392 251 86 143 chr4 128930372 128930581 -26699539 - B3A SINE B2 0 198 2 1 1568 499 248 155 0 chr4 128930588 128930717 -26699403 - B1F SINE Alu 0 149 1 1 1568 25 0 0 0 chr4 128930724 128930749 -26699371 + AT_rich Low_complexity Low_complexity 1 25 0 1 1568 334 274 81 81 chr4 128930749 128930872 -26699248 - RSINE1 SINE B4 0 165 43 1 1568 287 281 0 0 chr4 128930899 128930963 -26699157 - PB1D10 SINE Alu -6 111 48 1 1568 447 337 57 15 chr4 128931054 128931316 -26698804 + B4A SINE B4 2 274 -18 1 1568 234 0 0 0 chr4 128931346 128931372 -26698748 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1568 217 307 12 62 chr4 128931401 128931481 -26698639 + PB1D10 SINE Alu 3 78 -39 1 1568 580 106 0 0 chr4 128931804 128931889 -26698231 + B1_Mur3 SINE Alu 57 141 -8 1 1568 317 24 24 0 chr4 128931889 128931931 -26698189 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1568 607 248 7 21 chr4 128931976 128932116 -26698004 + B3 SINE B2 39 176 -40 1 1568 1168 76 0 0 chr4 128932156 128932301 -26697819 + B1_Mus2 SINE Alu 3 147 0 1 1568 665 223 16 14 chr4 128932566 128932719 -26697401 - B3A SINE B2 -50 145 1 1 1568 973 171 0 12 chr4 128932754 128932926 -26697194 + B2_Mm2 SINE B2 1 170 -25 1 1568 1457 98 0 15 chr4 128933046 128933244 -26696876 - B2_Mm2 SINE B2 0 195 1 1 1568 324 312 15 39 chr4 128933296 128933426 -26696694 - RSINE1 SINE B4 -37 128 2 1 1568 396 59 0 0 chr4 128933438 128933489 -26696631 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1568 318 67 0 0 chr4 128933551 128933596 -26696524 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1568 378 0 0 0 chr4 128934380 128934422 -26695698 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1568 399 239 22 11 chr4 128934914 128935003 -26695117 + B4A SINE B4 2 91 -201 1 1568 877 176 227 0 chr4 128935003 128935179 -26694941 + B3 SINE B2 1 216 0 1 1568 247 79 0 0 chr4 128935199 128935237 -26694883 + B2_Mm2 SINE B2 2 39 -156 1 1568 998 81 81 0 chr4 128935239 128935375 -26694745 + B1_Mm SINE Alu 1 147 0 1 1568 948 120 48 5 chr4 128935396 128935557 -26694563 + B2_Mm2 SINE B2 27 196 -20 1 1568 261 0 0 0 chr4 128935557 128935586 -26694534 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1568 1144 103 0 0 chr4 128935586 128935732 -26694388 - B1_Mus1 SINE Alu -1 147 2 1 1568 376 305 68 73 chr4 128935732 128935760 -26694360 + B3 SINE B2 197 215 -1 1 1568 542 273 46 88 chr4 128935793 128936010 -26694110 + B4A SINE B4 84 291 -1 1 1568 342 279 78 35 chr4 128936211 128936326 -26693794 - MIRb SINE MIR -135 133 14 1 1568 660 233 55 114 chr4 128936891 128937128 -26692992 - ID_B1 SINE B4 -1 223 1 1 1568 182 282 63 13 chr4 128937373 128937452 -26692668 + L2b LINE L2 3289 3371 -4 1 1568 257 326 92 8 chr4 128937820 128937950 -26692170 - MIRb SINE MIR -82 186 46 1 1568 403 284 83 13 chr4 128938102 128938259 -26691861 - MIRb SINE MIR -39 229 62 1 1568 207 0 0 0 chr4 128938401 128938424 -26691696 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1 1568 235 173 12 58 chr4 128938425 128938511 -26691609 + C-rich Low_complexity Low_complexity 2 83 0 1 1568 611 152 186 31 chr4 128938751 128938880 -26691240 - B1_Mur3 SINE Alu 0 149 1 1 1568 789 217 0 0 chr4 128938904 128939042 -26691078 - B1_Mur1 SINE Alu -10 139 2 1 1568 279 344 62 12 chr4 128939045 128939207 -26690913 + L2c LINE L2 3213 3382 -5 1 1568 291 354 59 27 chr4 128939425 128939611 -26690509 - MIRb SINE MIR -8 260 69 1 1568 613 282 18 6 chr4 128939612 128939783 -26690337 + ID_B1 SINE B4 39 211 -13 1 1568 243 0 0 0 chr4 128939784 128939811 -26690309 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1568 1734 16 0 0 chr4 128939876 128940066 -26690054 + B2_Mm1a SINE B2 1 190 -3 1 1568 354 316 0 40 chr4 128940067 128940166 -26689954 + ID_B1 SINE B4 112 206 -18 1 1568 597 28 0 0 chr4 128941407 128941478 -26688642 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1568 218 213 0 0 chr4 128941938 128941985 -26688135 + T-rich Low_complexity Low_complexity 1 47 0 1 1568 1528 33 33 5 chr4 128942070 128942254 -26687866 + B2_Mm2 SINE B2 2 190 -5 1 1568 189 94 0 0 chr4 128942325 128942357 -26687763 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1568 213 259 34 51 chr4 128943186 128943304 -26686816 + (CCCCAG)n Simple_repeat Simple_repeat 2 117 0 1 1568 378 0 0 0 chr4 128943764 128943806 -26686314 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1568 809 87 165 0 chr4 128943886 128944013 -26686107 + B1_Mur4 SINE Alu 3 150 0 1 1568 1335 256 13 66 chr4 128944227 128944565 -26685555 + MTEb LTR MaLR 1 326 -53 1 1568 342 0 0 0 chr4 128944565 128944603 -26685517 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 1568 697 180 39 15 chr4 128944605 128944735 -26685385 - B1_Mur4 SINE Alu -17 133 1 1 1568 1335 256 13 66 chr4 128944735 128944786 -26685334 + MTEb LTR MaLR 327 372 -7 1 1568 729 110 0 0 chr4 128945529 128945638 -26684482 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 1 1568 444 93 0 0 chr4 128945817 128945892 -26684228 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1568 900 103 8 0 chr4 128945895 128946021 -26684099 - B1_Mus1 SINE Alu -21 127 1 1 1568 250 241 0 33 chr4 128946396 128946456 -26683664 + MIRb SINE MIR 29 86 -182 1 1568 555 40 0 13 chr4 128946616 128946691 -26683429 - B1_Mus2 SINE Alu 0 147 74 1 1568 934 67 50 36 chr4 128946681 128946820 -26683300 + B1_Mus1 SINE Alu 8 148 0 1 1568 301 291 25 12 chr4 128946944 128947024 -26683096 + RSINE1 SINE B4 59 139 -26 1 1568 516 194 18 27 chr4 128947076 128947187 -26682933 + B3A SINE B2 3 112 -86 1 1568 248 240 110 104 chr4 128947187 128947239 -26682881 + B4A SINE B4 3 166 -126 1 1568 234 83 0 0 chr4 128947329 128947365 -26682755 + B2_Mm2 SINE B2 5 40 -155 1 1568 1139 48 0 40 chr4 128947368 128947519 -26682601 + B1_Mus2 SINE Alu 3 147 0 1 1568 1003 123 43 0 chr4 128947545 128947707 -26682413 + B2_Mm2 SINE B2 27 195 0 1 1568 387 209 170 54 chr4 128947703 128947850 -26682270 + B2_Mm2 SINE B2 27 190 -5 1 1568 229 253 0 227 chr4 128947881 128947925 -26682195 + PB1D10 SINE Alu 1 39 -78 1 1568 564 137 167 0 chr4 128947925 128948027 -26682093 + PB1D9 SINE Alu 2 120 0 1 1568 229 253 0 227 chr4 128948027 128948079 -26682041 + PB1D10 SINE Alu 40 75 -42 1 1568 302 238 0 0 chr4 128948102 128948165 -26681955 + ID4_ SINE ID 11 73 -10 1 1568 243 269 0 0 chr4 128948187 128948295 -26681825 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 1568 430 347 0 0 chr4 128948329 128948505 -26681615 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1568 648 183 27 40 chr4 128948645 128948793 -26681327 - B1_Mur2 SINE Alu -2 147 2 1 1568 413 231 93 37 chr4 128948951 128949059 -26681061 - ID_B1 SINE B4 -9 215 102 1 1568 1188 49 0 0 chr4 128949064 128949206 -26680914 + B1_Mus2 SINE Alu 1 142 -5 1 1568 243 0 0 0 chr4 128949209 128949236 -26680884 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1568 304 185 76 174 chr4 128949293 128949391 -26680729 - B1F2 SINE Alu 0 149 51 1 1568 186 43 0 0 chr4 128949391 128949414 -26680706 + (CCCCCA)n Simple_repeat Simple_repeat 4 26 0 1 1568 304 185 76 174 chr4 128949414 128949459 -26680661 - B1F2 SINE Alu -99 50 20 1 1568 518 283 68 107 chr4 128950993 128951199 -26678921 + B3 SINE B2 15 212 -4 1 1568 410 266 8 58 chr4 128951519 128951639 -26678481 + PB1D10 SINE Alu 1 114 -3 1 1568 645 246 45 108 chr4 128951646 128951835 -26678285 + B3 SINE B2 1 178 -38 1 1568 1158 76 0 0 chr4 128951835 128951980 -26678140 + B1_Mus2 SINE Alu 2 146 -1 1 1568 291 93 0 0 chr4 128951980 128952023 -26678097 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1568 645 246 45 108 chr4 128952023 128952055 -26678065 + B3 SINE B2 179 208 -8 1 1568 344 308 44 0 chr4 128952097 128952188 -26677932 + RSINE1 SINE B4 16 110 -55 1 1568 1242 74 84 17 chr4 128952215 128952376 -26677744 + B2_Mm1t SINE B2 3 171 -22 1 1568 1186 75 0 0 chr4 128952376 128952522 -26677598 + B1_Mus2 SINE Alu 2 147 0 1 1568 1242 74 84 17 chr4 128952522 128952539 -26677581 + B2_Mm1t SINE B2 172 193 0 1 1568 662 200 30 0 chr4 128952557 128952692 -26677428 + B1F2 SINE Alu 11 149 0 1 1568 940 171 0 0 chr4 128952706 128952852 -26677268 + B1_Mur2 SINE Alu 1 146 -3 1 1568 501 17 0 0 chr4 128953558 128953616 -26676504 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1568 417 251 244 29 chr4 128953620 128953792 -26676328 - ID_B1 SINE B4 -15 209 1 1 1568 893 126 30 0 chr4 128954181 128954316 -26675804 - B1_Mur3 SINE Alu 0 149 11 1 1568 313 278 76 76 chr4 128954187 128954331 -26675789 - B4A SINE B4 -71 221 78 1 1568 539 191 67 67 chr4 128954331 128954365 -26675755 + MT2B LTR ERVL 122 155 -446 1 1568 814 66 0 9 chr4 128954365 128954472 -26675648 + B1_Mm SINE Alu 1 106 -41 1 1568 1071 68 13 20 chr4 128954571 128954720 -26675400 - B1_Mus1 SINE Alu 0 148 1 1 1568 378 223 88 18 chr4 128954954 128955049 -26675071 - L1M4 LINE L1 -2947 3199 3105 1 1568 1284 27 0 0 chr4 128955049 128955196 -26674924 - B1_Mm SINE Alu 0 147 1 1 1568 378 223 88 18 chr4 128955196 128955214 -26674906 - L1M4 LINE L1 -3042 3104 3079 1 1568 922 136 216 22 chr4 128955220 128955401 -26674719 - B3 SINE B2 0 216 1 1 1568 224 184 163 0 chr4 128955541 128955590 -26674530 - ID SINE ID -144 80 24 1 1568 346 253 13 0 chr4 128955702 128955777 -26674343 + PB1D10 SINE Alu 22 97 -20 1 1568 643 12 24 0 chr4 128955793 128955877 -26674243 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 1 1568 747 193 0 22 chr4 128955878 128956016 -26674104 - B1_Mur4 SINE Alu -15 135 1 1 1568 987 117 128 6 chr4 128956038 128956210 -26673910 - B2_Mm2 SINE B2 -2 193 1 1 1568 243 171 0 0 chr4 128956326 128956367 -26673753 + B2_Mm2 SINE B2 1 41 -154 1 1568 1417 52 0 23 chr4 128956368 128956545 -26673575 + B2_Mm1a SINE B2 2 174 -19 1 1568 339 18 18 0 chr4 128956554 128956609 -26673511 + B2_Mm1t SINE B2 138 193 0 1 1568 824 168 32 0 chr4 128956611 128956736 -26673384 - B1_Mur3 SINE Alu -12 137 9 1 1568 1200 73 0 24 chr4 128956773 128956941 -26673179 - B2_Mm2 SINE B2 -5 190 27 1 1568 998 94 0 103 chr4 128956957 128957122 -26672998 - B1_Mus1 SINE Alu 0 148 1 1 1568 962 178 286 47 chr4 128957811 128957857 -26672263 - ORR1D1 LTR MaLR -1 373 320 1 1568 297 0 0 0 chr4 128957857 128957890 -26672230 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 1568 962 178 286 47 chr4 128957890 128958144 -26671976 - ORR1D1 LTR MaLR -55 319 2 1 1568 965 114 0 7 chr4 128958183 128958324 -26671796 + B1_Mur4 SINE Alu 9 148 -2 1 1568 445 306 43 130 chr4 128958338 128958448 -26671672 - B3 SINE B2 -47 169 59 1 1568 1392 78 16 0 chr4 128958448 128958602 -26671518 + B2_Mm2 SINE B2 1 154 -41 1 1568 645 14 0 0 chr4 128958602 128958676 -26671444 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 1 1568 1392 78 16 0 chr4 128958676 128958713 -26671407 + B2_Mm2 SINE B2 155 194 -1 1 1568 445 306 43 130 chr4 128958713 128958786 -26671334 - B3 SINE B2 -158 58 2 1 1568 221 298 0 0 chr4 128958786 128958843 -26671277 + CT-rich Low_complexity Low_complexity 4 60 0 1 1568 259 146 42 0 chr4 128958845 128958893 -26671227 - BC1_Mm scRNA scRNA -102 50 1 1 1568 856 142 24 24 chr4 128958934 128959129 -26670991 + B3 SINE B2 1 195 0 1 1568 486 109 11 21 chr4 128959177 128959271 -26670849 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 1568 1126 57 29 0 chr4 128959396 128959536 -26670584 - B1_Mm SINE Alu -2 145 2 1 1568 273 254 15 0 chr4 128959845 128959912 -26670208 + BC1_Mm scRNA scRNA 3 70 -82 1 1568 599 39 13 0 chr4 128959941 128960019 -26670101 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1568 792 103 147 0 chr4 128960027 128960143 -26669977 - B1_Mur4 SINE Alu -17 133 1 1 1568 22 0 0 0 chr4 128960332 128960354 -26669766 + AT_rich Low_complexity Low_complexity 1 22 0 1 1568 275 307 138 55 chr4 128960856 128961001 -26669119 - RSINE1 SINE B4 -2 163 7 1 1568 278 297 32 63 chr4 128961007 128961133 -26668987 - L2a LINE L2 -32 3394 3273 1 1568 941 143 0 7 chr4 128961139 128961287 -26668833 + B1_Mus1 SINE Alu 2 148 0 1 1568 1153 75 0 0 chr4 128961338 128961484 -26668636 + B1_Mm SINE Alu 2 147 0 1 1568 339 165 37 66 chr4 128961496 128961596 -26668524 + (CAAA)n Simple_repeat Simple_repeat 2 103 0 1 1568 1693 26 0 0 chr4 128961596 128961789 -26668331 + B2_Mm1a SINE B2 1 193 0 1 1568 339 165 37 66 chr4 128961789 128961800 -26668320 + (CAAA)n Simple_repeat Simple_repeat 4 12 0 1 1568 2906 129 72 29 chr4 128961800 128962311 -26667809 - RMER16 LTR ERVK 0 533 1 1 1568 339 165 37 66 chr4 128962311 128962334 -26667786 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1568 1151 89 0 0 chr4 128962354 128962500 -26667620 - B1_Mm SINE Alu -1 146 1 1 1568 1019 144 0 11 chr4 128962534 128962716 -26667404 + CT-rich Low_complexity Low_complexity 1 180 0 1 1568 880 103 56 0 chr4 128962718 128962844 -26667276 - B1_Mus2 SINE Alu -14 133 1 1 1568 491 259 37 22 chr4 128962849 128962983 -26667137 - B3A SINE B2 0 198 63 1 1568 185 159 0 22 chr4 128964753 128964798 -26665322 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 1 1568 236 231 172 21 chr4 128965999 128966092 -26664028 + MIR SINE MIR 29 135 -73 1 1568 899 138 21 14 chr4 128966302 128966442 -26663678 - B1_Mus1 SINE Alu -6 142 2 1 1568 1641 21 16 0 chr4 128966452 128966640 -26663480 - B2_Mm1a SINE B2 -1 192 2 1 1568 235 286 39 0 chr4 128966647 128966724 -26663396 - ID SINE ID -143 81 2 1 1568 347 177 0 132 chr4 128967234 128967325 -26662795 + B1F SINE Alu 1 79 -70 1 1568 1107 206 29 14 chr4 128967327 128967534 -26662586 + B3 SINE B2 3 212 -4 1 1568 310 184 0 116 chr4 128967563 128967649 -26662471 + B1F1 SINE Alu 65 140 -9 1 1568 1021 122 14 0 chr4 128967748 128967896 -26662224 + B1_Mur4 SINE Alu 1 150 0 1 1568 402 115 0 0 chr4 128967897 128967958 -26662162 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 1 1568 182 37 0 36 chr4 128967959 128967987 -26662133 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1568 465 220 88 56 chr4 128968148 128968273 -26661847 + RSINE1 SINE B4 37 165 0 1 1568 604 169 94 24 chr4 128968356 128968483 -26661637 - B1_Mur1 SINE Alu -1 148 13 1 1568 281 288 31 31 chr4 128968610 128968622 -26661498 - B1_Mm SINE Alu -25 122 81 1 1568 468 247 0 0 chr4 128968622 128968711 -26661409 - ID_B1 SINE B4 -33 191 103 1 1568 281 288 31 31 chr4 128968711 128968728 -26661392 - B1_Mm SINE Alu -25 80 9 1 1568 302 279 0 12 chr4 128968740 128968820 -26661300 - ID4 SINE ID -1 82 4 1 1568 255 246 53 0 chr4 128968852 128968909 -26661211 - B4A SINE B4 -6 286 227 1 1568 270 277 165 63 chr4 128968920 128969078 -26661042 - B4A SINE B4 -117 175 2 1 1568 1363 90 11 0 chr4 128969117 128969305 -26660815 - B2_Mm1t SINE B2 -2 191 2 1 1568 601 86 0 0 chr4 128969311 128969392 -26660728 - B1_Mur4 SINE Alu -1 149 69 1 1568 442 186 75 38 chr4 128969441 128969547 -26660573 - B3A SINE B2 -88 110 1 1 1568 510 234 73 18 chr4 128969596 128969705 -26660415 - RSINE1 SINE B4 -49 116 2 1 1568 465 248 77 21 chr4 128969705 128969846 -26660274 - ID_B1 SINE B4 -67 225 84 1 1568 1474 166 116 27 chr4 128970050 128970385 -26659735 - ORR1B1 LTR MaLR -8 386 22 1 1568 485 214 9 97 chr4 128971641 128971755 -26658365 - PB1D10 SINE Alu -13 104 1 1 1568 833 167 21 7 chr4 128971796 128971941 -26658179 - B1_Mur3 SINE Alu 0 149 3 1 1568 266 87 0 21 chr4 128972024 128972071 -26658049 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 1568 1159 48 7 27 chr4 128972214 128972363 -26657757 - B1_Mus1 SINE Alu -1 147 2 1 1568 900 243 40 19 chr4 128972385 128972602 -26657518 - B3 SINE B2 0 216 1 1 1568 423 0 0 0 chr4 128972642 128972689 -26657431 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1568 227 200 0 0 chr4 128972720 128972760 -26657360 - ID SINE ID -153 71 32 1 1568 502 231 65 16 chr4 128972793 128972916 -26657204 - B1F1 SINE Alu -10 139 11 1 1568 249 267 103 56 chr4 128973486 128973593 -26656527 - ID_B1 SINE B4 -1 223 112 1 1568 267 189 0 0 chr4 128973588 128973641 -26656479 - PB1D10 SINE Alu -39 78 26 1 1568 1206 43 0 0 chr4 128973726 128973866 -26656254 - B1_Mus1 SINE Alu -6 142 3 1 1568 206 131 0 21 chr4 128973968 128973987 -26656133 + (TTA)n Simple_repeat Simple_repeat 1 19 0 1 1568 1285 96 11 0 chr4 128973987 128974164 -26655956 - B2_Mm1t SINE B2 -14 179 1 1 1568 206 131 0 21 chr4 128974164 128974176 -26655944 + (TTA)n Simple_repeat Simple_repeat 1 12 0 1 1568 1539 62 5 0 chr4 128974176 128974368 -26655752 - B2_Mm1t SINE B2 0 193 1 1 1568 206 131 0 21 chr4 128974368 128974382 -26655738 + (TTA)n Simple_repeat Simple_repeat 2 15 0 1 1568 1291 88 22 6 chr4 128974382 128974564 -26655556 - B2_Mm2 SINE B2 -9 186 2 1 1568 583 158 219 0 chr4 128974580 128974694 -26655426 - B1_Mur3 SINE Alu 0 149 11 1 1568 299 163 124 34 chr4 128974625 128974714 -26655406 - MT2B LTR ERVL -350 251 155 1 24 375 335 55 42 chr4 128974710 128974875 -26655245 - B3A SINE B2 -5 193 27 1 1569 421 274 10 10 chr4 128974873 128974976 -26655144 - PB1D10 SINE Alu -7 110 8 1 1569 609 253 20 87 chr4 128975302 128975497 -26654623 + ID_B1 SINE B4 2 183 -41 1 1569 199 283 0 19 chr4 128975903 128975957 -26654163 - L2c LINE L2 -308 3079 3027 1 1569 2455 148 149 177 chr4 128976804 128977189 -26652931 - RMER6A LTR ERVK 0 756 355 1 1569 1187 77 0 0 chr4 128977189 128977332 -26652788 + B1_Mus1 SINE Alu 2 144 -4 1 1569 2455 148 149 177 chr4 128977332 128977455 -26652665 - RMER6A LTR ERVK -402 354 324 1 1569 1325 102 11 0 chr4 128977455 128977642 -26652478 - B2_Mm1t SINE B2 -4 189 1 1 1569 2455 148 149 177 chr4 128977642 128977910 -26652210 - RMER6A LTR ERVK -433 323 1 1 1569 327 265 36 12 chr4 128977913 128977997 -26652123 + B3 SINE B2 97 182 -34 1 1569 304 205 154 88 chr4 128978135 128978226 -26651894 - B1_Mur1 SINE Alu -6 143 47 1 1569 694 225 0 55 chr4 128978233 128978379 -26651741 - B1_Mus2 SINE Alu -1 146 9 1 1569 1184 41 14 0 chr4 128978421 128978566 -26651554 - B1_Mm SINE Alu 0 147 1 1 1569 240 190 214 60 chr4 128978567 128978651 -26651469 - PB1D10 SINE Alu 0 117 21 1 1569 1002 190 16 11 chr4 128978658 128978844 -26651276 - RLTR19C LTR ERVK -7 708 522 1 1569 1156 69 0 0 chr4 128978845 128978989 -26651131 + B1_Mm SINE Alu 4 147 0 1 1569 1578 189 27 30 chr4 128979029 128979362 -26650758 - RLTR19C LTR ERVK -174 332 1 1 1569 1037 72 43 0 chr4 128979697 128979835 -26650285 - B1_Mus1 SINE Alu -3 145 2 1 1569 431 224 79 63 chr4 128979836 128979950 -26650170 - B1_Mm SINE Alu -42 107 3 1 1569 236 300 79 109 chr4 128979950 128979978 -26650142 - MT2B LTR ERVL -434 167 143 1 1569 507 298 17 45 chr4 128979974 128980150 -26649970 - B3A SINE B2 -1 197 27 1 1569 317 231 55 14 chr4 128980149 128980266 -26649854 - B3 SINE B2 0 198 75 1 1569 712 200 29 0 chr4 128980303 128980443 -26649677 + B1_Mur4 SINE Alu 5 148 -2 1 1569 924 151 58 1 chr4 128980507 128980683 -26649437 - B2_Mm2 SINE B2 -4 189 4 1 1569 292 288 208 10 chr4 128980819 128980966 -26649154 - B4 SINE B4 -121 171 5 1 1569 377 282 142 24 chr4 128980988 128981115 -26649005 - B1_Mm SINE Alu -4 143 2 1 1569 246 177 207 37 chr4 128981154 128981236 -26648884 - ID_B1 SINE B4 -31 193 98 1 1569 1013 51 51 14 chr4 128981310 128981448 -26648672 + B1_Mus1 SINE Alu 5 147 -1 1 1569 436 266 155 68 chr4 128981841 128982047 -26648073 - ID_B1 SINE B4 0 224 1 1 1569 207 100 0 0 chr4 128982246 128982276 -26647844 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1569 1128 82 7 0 chr4 128982276 128982422 -26647698 - B1_Mus2 SINE Alu 0 147 1 1 1569 587 37 0 0 chr4 128982445 128982527 -26647593 - L1Md_F2 LINE L1 0 6582 6501 1 1569 684 231 62 34 chr4 128982552 128982731 -26647389 - B3 SINE B2 -25 191 8 1 1569 609 167 18 27 chr4 128982799 128982910 -26647210 - PB1D9 SINE Alu -1 119 10 1 1569 535 202 123 8 chr4 128982926 128983056 -26647064 + B1_Mur1 SINE Alu 5 149 0 1 1569 1337 69 26 31 chr4 128983059 128983224 -26646896 + B2_Mm1t SINE B2 1 170 -23 1 1569 1708 31 0 0 chr4 128983224 128983416 -26646704 - B2_Mm1a SINE B2 -1 192 1 1 1569 1337 69 26 31 chr4 128983416 128983444 -26646676 + B2_Mm1t SINE B2 171 193 0 1 1569 275 219 206 14 chr4 128984012 128984134 -26645986 - B1_Mur2 SINE Alu -17 132 1 1 1569 488 271 23 30 chr4 128984204 128984337 -26645783 + B3 SINE B2 77 208 -8 1 1569 832 57 9 0 chr4 128984369 128984474 -26645646 - B2_Mm2 SINE B2 -89 106 1 1 1569 293 267 53 0 chr4 128984702 128984777 -26645343 - B3A SINE B2 -119 79 1 1 1569 216 216 0 0 chr4 128984866 128984903 -26645217 + PB1D10 SINE Alu 35 71 -46 1 1569 362 276 78 56 chr4 128985062 128985204 -26644916 + B1_Mur1 SINE Alu 1 145 -4 1 1569 280 243 80 67 chr4 128985846 128985921 -26644199 - B1_Mus2 SINE Alu -27 120 18 1 1569 589 195 51 0 chr4 128985927 128986045 -26644075 - ID_B1 SINE B4 -4 220 97 1 1569 302 125 36 0 chr4 128987033 128987089 -26643031 + GA-rich Low_complexity Low_complexity 2 59 0 1 1569 901 83 61 0 chr4 128987904 128988036 -26642084 - B1_Mus1 SINE Alu -7 141 2 1 1569 288 127 0 0 chr4 128988063 128988118 -26642002 + (A)n Simple_repeat Simple_repeat 1 55 0 1 1569 775 99 18 0 chr4 128988185 128988296 -26641824 - PB1D9 SINE Alu -6 114 2 1 1569 481 202 18 27 chr4 128988447 128988559 -26641561 + PB1D9 SINE Alu 1 111 -9 1 1569 498 196 18 36 chr4 128989298 128989409 -26640711 - PB1D9 SINE Alu 0 120 12 1 1569 2690 66 42 28 chr4 128989409 128989769 -26640351 + RLTR10B2 LTR ERVK 1 365 0 1 1569 298 213 184 41 chr4 128989807 128989905 -26640215 - B1F1 SINE Alu 0 149 9 1 1569 751 237 13 44 chr4 128989983 128990142 -26639978 + B3A SINE B2 3 156 -42 1 1569 1247 103 11 21 chr4 128990321 128990510 -26639610 - B2_Mm1t SINE B2 -5 188 2 1 1569 336 269 8 133 chr4 128990776 128990896 -26639224 + MT2B LTR ERVL 153 257 -344 1 1569 835 149 14 21 chr4 128990799 128990943 -26639177 + B1_Mus1 SINE Alu 6 148 0 1 1569 483 223 134 35 chr4 128991947 128992002 -26638118 + ID SINE ID 11 82 -142 1 1569 568 176 40 56 chr4 128992002 128992128 -26637992 + B1_Mus2 SINE Alu 3 126 -21 1 1569 390 270 22 1 chr4 128992165 128992264 -26637856 + PB1D7 SINE Alu 21 120 0 1 1569 392 240 115 14 chr4 128992311 128992459 -26637661 + B3 SINE B2 48 210 -6 1 1569 843 149 42 7 chr4 128992640 128992782 -26637338 + B1_Mur3 SINE Alu 1 147 -2 1 1569 341 198 66 110 chr4 128993135 128993226 -26636894 - B1_Mur3 SINE Alu -17 132 46 1 1569 1246 20 7 7 chr4 128993533 128993681 -26636439 + B1_Mus1 SINE Alu 1 148 0 1 1569 186 43 0 0 chr4 128993681 128993704 -26636416 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1569 928 163 204 18 chr4 128993713 128993938 -26636182 + RMER16-int LTR ERVK 5140 5406 0 1 1569 789 162 34 55 chr4 128993938 128994185 -26635935 + RMER16 LTR ERVK 198 450 -83 1 1569 1252 41 0 0 chr4 128994194 128994341 -26635779 + B1_Mus2 SINE Alu 1 147 0 1 1569 718 173 118 22 chr4 128994445 128994581 -26635539 + B1_Mur4 SINE Alu 1 149 -1 1 1569 798 93 17 17 chr4 128994583 128994703 -26635417 + PB1D9 SINE Alu 1 120 0 1 1569 1077 92 90 18 chr4 128995196 128995362 -26634758 + B2_Mm1a SINE B2 2 179 -14 1 1569 338 124 11 35 chr4 128995374 128995437 -26634683 + B2_Mm2 SINE B2 46 112 -86 1 1569 21 0 0 0 chr4 128995454 128995475 -26634645 + AT_rich Low_complexity Low_complexity 1 21 0 1 1569 428 264 38 0 chr4 128995548 128995654 -26634466 + B1_Mur4 SINE Alu 35 144 -6 1 1569 792 43 252 0 chr4 128996353 128996468 -26633652 - B1_Mus2 SINE Alu 0 147 4 1 1569 287 222 48 0 chr4 128996545 128996608 -26633512 - ID_B1 SINE B4 -52 172 107 1 1569 1687 31 0 0 chr4 128996808 128997000 -26633120 + B2_Mm1a SINE B2 2 193 0 1 1569 307 211 113 0 chr4 128997118 128997189 -26632931 + B3 SINE B2 1 79 -137 1 1569 228 211 70 0 chr4 128997217 128997274 -26632846 - ID_B1 SINE B4 -78 146 86 1 1569 560 235 81 0 chr4 128997303 128997439 -26632681 + B1_Mus1 SINE Alu 1 147 -1 1 1569 235 288 0 68 chr4 128997482 128997556 -26632564 - B1F SINE Alu -37 83 15 1 1569 23 33 0 0 chr4 128997798 128997828 -26632292 + AT_rich Low_complexity Low_complexity 1 30 0 1 1569 418 298 53 0 chr4 128997851 128997965 -26632155 + RSINE1 SINE B4 10 129 -36 1 1569 212 256 121 98 chr4 128997853 128998026 -26632094 + B2_Mm2 SINE B2 11 187 -8 1 1569 28 48 0 0 chr4 128998033 128998075 -26632045 + AT_rich Low_complexity Low_complexity 1 42 0 1 1569 566 292 13 64 chr4 128998117 128998274 -26631846 - RSINE1 SINE B4 -9 156 8 1 1569 387 236 136 38 chr4 128998344 128998476 -26631644 + B3 SINE B2 67 211 -5 1 1569 1342 80 36 31 chr4 128998504 128998631 -26631489 + B2_Mm2 SINE B2 1 125 -70 1 1569 3224 39 39 0 chr4 128998631 128999012 -26631108 - MTA_Mm LTR MaLR 0 396 1 1 1569 1342 80 36 31 chr4 128999012 128999077 -26631043 + B2_Mm2 SINE B2 126 194 -1 1 1569 560 225 86 91 chr4 129000167 129000213 -26629907 + B4 SINE B4 39 222 -69 1 1569 1139 36 0 0 chr4 129000213 129000352 -26629768 + B1_Mm SINE Alu 9 147 0 2 1569 713 162 95 7 chr4 129000435 129000572 -26629548 + B1_Mur3 SINE Alu 1 149 0 3 1569 1297 83 0 0 chr4 129000621 129000790 -26629330 + B2_Mm2 SINE B2 3 171 -24 4 1569 536 240 56 8 chr4 129000978 129001104 -26629016 - B1_Mur3 SINE Alu -8 141 10 5 1569 337 287 40 0 chr4 129001123 129001190 -26628930 + PB1D9 SINE Alu 9 76 -44 6 1569 180 0 0 0 chr4 129001190 129001210 -26628910 + (CAGC)n Simple_repeat Simple_repeat 4 23 0 7 1569 337 287 40 0 chr4 129001210 129001243 -26628877 + PB1D9 SINE Alu 77 112 -8 6 1569 236 291 90 34 chr4 129001840 129001929 -26628191 - BC1_Mm scRNA scRNA -58 94 1 8 1569 915 231 14 28 chr4 129002188 129002406 -26627714 + B3 SINE B2 2 216 0 9 1569 21 0 0 0 chr4 129002414 129002435 -26627685 + AT_rich Low_complexity Low_complexity 1 21 0 1 1569 263 267 13 26 chr4 129002847 129002924 -26627196 - ID4_ SINE ID -4 79 4 1 1569 249 280 88 53 chr4 129003528 129003641 -26626479 + PB1D10 SINE Alu 1 117 0 1 1569 216 0 0 0 chr4 129003645 129003669 -26626451 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1569 371 321 151 36 chr4 129003688 129003940 -26626180 + B4A SINE B4 1 281 -11 1 1569 580 165 138 23 chr4 129004078 129004208 -26625912 + B2_Mm2 SINE B2 48 192 -3 1 1569 1297 76 47 0 chr4 129004213 129004385 -26625735 + B2_Mm2 SINE B2 1 180 -15 1 1569 357 24 0 0 chr4 129004385 129004427 -26625693 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 1 1569 238 276 52 0 chr4 129004514 129004572 -26625548 - ID4_ SINE ID -22 61 1 1 1569 1182 62 0 0 chr4 129004581 129004727 -26625393 + B1_Mus2 SINE Alu 2 147 0 1 1569 763 114 39 85 chr4 129005001 129005154 -26624966 + B1_Mus1 SINE Alu 2 147 -1 2 1569 468 195 63 63 chr4 129005431 129005498 -26624622 + B2_Mm2 SINE B2 1 65 -130 2 1569 918 204 70 20 chr4 129005498 129005698 -26624422 + B3 SINE B2 1 210 -6 2 1569 468 195 63 63 chr4 129005698 129005756 -26624364 + B2_Mm2 SINE B2 66 126 -69 2 1569 459 272 146 100 chr4 129006146 129006221 -26623899 - B4 SINE B4 -18 274 203 2 1569 1502 68 5 0 chr4 129006221 129006412 -26623708 + B2_Mm1t SINE B2 1 192 -1 2 1569 459 272 146 100 chr4 129006412 129006597 -26623523 - B4 SINE B4 -90 202 2 2 1569 323 336 59 17 chr4 129006620 129006738 -26623382 + B3A SINE B2 1 123 -75 2 1569 243 0 0 0 chr4 129006786 129006813 -26623307 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2 1569 405 0 0 0 chr4 129006813 129006857 -26623263 + (CAAG)n Simple_repeat Simple_repeat 2 46 0 2 1569 333 192 78 52 chr4 129006857 129006934 -26623186 - RSINE1 SINE B4 -68 97 19 2 1569 1118 101 0 0 chr4 129007150 129007298 -26622822 - B1_Mus1 SINE Alu 0 148 1 2 1569 243 0 0 0 chr4 129007300 129007327 -26622793 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1569 534 183 43 9 chr4 129007447 129007563 -26622557 + PB1D9 SINE Alu 1 120 0 3 1569 199 279 49 0 chr4 129007884 129007945 -26622175 - MIRm SINE MIR -200 76 13 3 1569 573 235 153 16 chr4 129008035 129008225 -26621895 + B3 SINE B2 1 216 0 3 1569 1070 82 0 0 chr4 129008272 129008406 -26621714 - B1_Mus1 SINE Alu -13 135 2 3 1569 786 238 42 37 chr4 129008437 129008651 -26621469 + B3 SINE B2 1 215 -1 3 1569 874 220 129 18 chr4 129008658 129008951 -26621169 + MTD LTR MaLR 63 386 -14 3 1569 259 312 26 13 chr4 129008973 129009051 -26621069 + ID4_ SINE ID 4 82 -1 3 1569 497 156 50 30 chr4 129009654 129009753 -26620367 + B1_Mus2 SINE Alu 47 147 0 3 1569 212 179 0 71 chr4 129009891 129009933 -26620187 - PB1D10 SINE Alu -7 110 72 3 1569 247 295 33 74 chr4 129009946 129010067 -26620053 - MT2B LTR ERVL -311 290 175 4 1569 373 202 76 0 chr4 129009990 129010069 -26620051 - PB1D10 SINE Alu -27 93 9 3 1569 243 308 27 71 chr4 129010014 129010126 -26619994 + YREP_Mm Unknown Unknown 253 359 -1453 4 1569 697 242 81 20 chr4 129010179 129010377 -26619743 + B3 SINE B2 3 212 -4 4 1569 1317 89 21 0 chr4 129010478 129010668 -26619452 - B2_Mm2 SINE B2 0 195 2 4 1569 1004 119 98 38 chr4 129011355 129011538 -26618582 + B2_Mm2 SINE B2 2 195 0 4 1569 201 74 0 0 chr4 129013776 129013803 -26616317 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 4 1569 1489 34 56 0 chr4 129013885 129014064 -26616056 + B2_Mm1a SINE B2 1 189 -4 4 1569 1082 90 14 0 chr4 129014067 129014212 -26615908 + B1_Mus1 SINE Alu 1 147 -1 4 1569 264 182 71 18 chr4 129014278 129014334 -26615786 + Charlie1b DNA MER1_type 463 521 -2 4 1569 291 230 186 20 chr4 129014423 129014525 -26615595 - PB1D7 SINE Alu 0 120 2 4 1569 322 293 110 37 chr4 129014581 129014744 -26615376 - L1ME2 LINE L1 -111 6053 5879 5 1569 1524 264 147 12 chr4 129014750 129015330 -26614790 - MER67B LTR ERV1 -1 660 3 5 1569 244 303 91 0 chr4 129015443 129015542 -26614578 - B1F SINE Alu -4 145 38 5 1569 192 77 0 0 chr4 129015598 129015624 -26614496 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 5 1569 260 300 9 0 chr4 129015624 129015725 -26614395 - ID4_ SINE ID -45 107 5 5 1569 526 224 88 22 chr4 129015783 129015920 -26614200 + B1F2 SINE Alu 2 147 -2 5 1569 216 219 141 0 chr4 129016199 129016263 -26613857 - PB1 SINE Alu -33 94 22 5 1569 345 206 196 0 chr4 129016309 129016401 -26613719 + PB1D10 SINE Alu 1 110 -7 5 1569 812 236 55 83 chr4 129016610 129016827 -26613293 - B3 SINE B2 0 216 6 5 1569 283 243 231 9 chr4 129016878 129016986 -26613134 - B4 SINE B4 -1 291 160 5 1569 916 145 18 25 chr4 129017004 129017167 -26612953 - URR1B DNA MER1_type -5 220 59 6 1569 276 339 7 97 chr4 129017197 129017341 -26612779 - B4A SINE B4 -152 140 10 5 1569 189 74 0 0 chr4 129017342 129017369 -26612751 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1569 387 0 0 0 chr4 129017404 129017447 -26612673 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1569 337 245 236 0 chr4 129017449 129017555 -26612565 - RSINE1 SINE B4 -24 141 11 6 1569 873 118 15 0 chr4 129017593 129017728 -26612392 + B1_Mur4 SINE Alu 6 142 -8 6 1569 1280 53 99 0 chr4 129018052 129018223 -26611897 - B2_Mm2 SINE B2 -7 188 1 6 1569 755 212 0 0 chr4 129018229 129018361 -26611759 - B1_Mur1 SINE Alu -1 148 17 6 1569 318 213 336 44 chr4 129018392 129018505 -26611615 - RSINE1 SINE B4 -5 160 15 6 1569 889 244 24 0 chr4 129019243 129019448 -26610672 - B3 SINE B2 -6 210 1 6 1569 229 150 55 158 chr4 129019547 129019563 -26610557 + RLTR25B LTR ERVK 399 401 -627 6 1569 563 216 65 0 chr4 129019563 129019702 -26610418 + B1_Mur1 SINE Alu 1 148 -1 7 1569 903 267 35 0 chr4 129020123 129020325 -26609795 + ID_B1 SINE B4 9 217 -7 7 1569 221 167 19 0 chr4 129020456 129020510 -26609610 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1569 23 0 0 0 chr4 129020654 129020677 -26609443 + AT_rich Low_complexity Low_complexity 1 23 0 7 1569 1116 67 0 0 chr4 129020677 129020812 -26609308 + B1_Mus1 SINE Alu 3 137 -11 7 1569 708 198 131 17 chr4 129020830 129021005 -26609115 - B3 SINE B2 -19 197 3 7 1569 583 219 66 0 chr4 129021099 129021236 -26608884 - B1_Mus2 SINE Alu -1 146 1 7 1569 763 173 59 11 chr4 129021553 129021741 -26608379 - B3 SINE B2 -4 191 1 7 1569 1198 55 0 0 chr4 129021774 129021920 -26608200 - B1_Mus2 SINE Alu 0 147 2 7 1569 1269 116 21 5 chr4 129021925 129022116 -26608004 - B2_Mm2 SINE B2 0 195 2 7 1569 1021 97 162 12 chr4 129022143 129022310 -26607810 - B2_Mm1t SINE B2 -1 192 1 8 1569 722 185 52 0 chr4 129022517 129022652 -26607468 + B1_Mur2 SINE Alu 5 146 -3 8 1569 188 289 33 112 chr4 129022653 129022867 -26607253 - L2 LINE L2 -1527 1892 1696 8 1569 433 145 14 0 chr4 129022981 129023050 -26607070 - B1_Mur2 SINE Alu -5 144 75 8 1569 195 42 0 0 chr4 129023061 129023085 -26607035 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1569 1156 75 0 0 chr4 129023089 129023235 -26606885 - B1_Mus2 SINE Alu 0 147 2 8 1569 4976 67 2 2 chr4 129024423 129025051 -26605069 - L1_Mus1 LINE L1 0 6567 5940 8 1569 406 282 146 46 chr4 129025143 129025273 -26604847 + B1F SINE Alu 1 143 -6 8 1569 1516 43 21 0 chr4 129025531 129025719 -26604401 - B2_Mm1t SINE B2 0 193 2 8 1569 878 162 7 34 chr4 129025722 129025869 -26604251 - B1_Mm SINE Alu 0 147 5 8 1569 562 228 43 9 chr4 129025886 129026001 -26604119 - PB1D9 SINE Alu -1 119 1 9 1569 324 0 0 0 chr4 129026036 129026072 -26604048 + (CCA)n Simple_repeat Simple_repeat 2 37 0 9 1569 343 323 62 16 chr4 129026098 129026227 -26603893 + B4A SINE B4 2 136 -156 9 1569 295 288 117 56 chr4 129026372 129026534 -26603586 - RLTR12B LTR ERVK -230 298 127 9 1569 273 209 14 56 chr4 129026721 129026792 -26603328 - URR1A DNA MER1_type -81 145 78 9 1569 292 238 24 24 chr4 129027143 129027156 -26602964 - RLTR25A LTR ERVK -501 602 589 9 1569 189 0 0 0 chr4 129027156 129027177 -26602943 + (TGG)n Simple_repeat Simple_repeat 3 23 0 9 1569 292 238 24 24 chr4 129027177 129027245 -26602875 - RLTR25A LTR ERVK -515 588 522 9 1569 668 167 0 9 chr4 129027245 129027286 -26602834 - B1_Mus1 SINE Alu -35 113 6 9 1569 644 197 30 15 chr4 129027322 129027456 -26602664 - B1_Mur1 SINE Alu 0 149 14 9 1569 491 119 257 35 chr4 129027471 129027601 -26602519 + B1_Mur3 SINE Alu 1 148 -1 9 1569 384 211 103 79 chr4 129027625 129027790 -26602330 + B3A SINE B2 30 198 0 1 1569 408 136 167 83 chr4 129027865 129027985 -26602135 + B1_Mur1 SINE Alu 16 145 -4 1 1569 543 227 198 0 chr4 129028021 129028193 -26601927 - B3 SINE B2 -10 206 1 1 1569 426 205 57 89 chr4 129028230 129028353 -26601767 - PB1D9 SINE Alu -1 119 1 1 1569 342 230 26 26 chr4 129028622 129028698 -26601422 - B4 SINE B4 -192 100 25 1 1569 532 312 131 67 chr4 129028707 129028975 -26601145 - B4A SINE B4 -2 290 6 1 1569 1243 85 57 0 chr4 129029039 129029215 -26600905 - B2_Mm2 SINE B2 -9 186 1 1 1569 27 0 0 0 chr4 129029218 129029245 -26600875 + AT_rich Low_complexity Low_complexity 1 27 0 1 1569 379 152 0 0 chr4 129029361 129029420 -26600700 - B3 SINE B2 -155 61 3 1 1569 858 151 13 40 chr4 129029462 129029614 -26600506 + B1_Mur4 SINE Alu 2 149 -1 1 1569 534 246 57 16 chr4 129029728 129029852 -26600268 - B1_Mus1 SINE Alu -1 147 19 1 1569 371 258 92 92 chr4 129029841 129030037 -26600083 - B3 SINE B2 -12 204 9 1 1569 2960 164 45 20 chr4 129030076 129030629 -26599491 - RLTR17 LTR ERVK -28 664 98 1 1569 275 242 25 8 chr4 129030947 129031068 -26599052 + ORR1B1-int LTR MaLR 632 754 -755 1 1569 1060 65 0 14 chr4 129030969 129031099 -26599021 + B1_Mm SINE Alu 9 138 -9 1 1569 261 0 0 0 chr4 129031099 129031128 -26598992 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1569 267 31 0 0 chr4 129031137 129031169 -26598951 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 1 1569 864 171 188 27 chr4 129032121 129032307 -26597813 - B3 SINE B2 0 216 1 1 1569 559 240 42 96 chr4 129032778 129032944 -26597176 - RSINE1 SINE B4 -7 158 2 1 1569 479 236 71 0 chr4 129032992 129033119 -26597001 - B3 SINE B2 0 216 81 1 1569 318 150 199 0 chr4 129033176 129033263 -26596857 - B1_Mur3 SINE Alu -40 109 1 1 1569 399 113 0 0 chr4 129033313 129033375 -26596745 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 1 1569 534 218 110 24 chr4 129033570 129033697 -26596423 - B1F SINE Alu 0 149 12 1 1569 1641 17 0 0 chr4 129033970 129034148 -26595972 + B2_Mm1a SINE B2 1 178 -15 1 1569 183 42 0 0 chr4 129034149 129034173 -26595947 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1569 299 203 125 0 chr4 129034339 129034403 -26595717 + PB1D9 SINE Alu 9 80 -40 1 1569 660 262 41 0 chr4 129034427 129034572 -26595548 - RSINE1 SINE B4 0 165 15 1 1569 1218 62 0 0 chr4 129034585 129034731 -26595389 - B1_Mus2 SINE Alu 0 147 2 1 1569 313 172 141 0 chr4 129034763 129034827 -26595293 + ID4_ SINE ID 2 74 -9 1 1569 329 162 15 0 chr4 129034844 129034912 -26595208 + GA-rich Low_complexity Low_complexity 2 70 0 1 1569 571 75 15 7 chr4 129035427 129035530 -26594590 - B1_Mur4 SINE Alu 0 150 15 1 1569 214 253 103 169 chr4 129035545 129035580 -26594540 - B2_Mm1a SINE B2 -9 184 162 1 1569 180 0 0 0 chr4 129035580 129035600 -26594520 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1569 628 262 26 26 chr4 129035600 129035753 -26594367 - RSINE1 SINE B4 -2 163 11 1 1569 517 239 8 0 chr4 129035764 129035881 -26594239 - PB1D7 SINE Alu -2 118 1 1 1569 1207 48 0 0 chr4 129036177 129036323 -26593797 - B1_Mus2 SINE Alu 0 147 2 1 1569 30 0 0 0 chr4 129036408 129036438 -26593682 + AT_rich Low_complexity Low_complexity 1 30 0 1 1569 1316 82 38 0 chr4 129036488 129036672 -26593448 + B2_Mm2 SINE B2 1 191 -4 1 1569 382 307 172 18 chr4 129036871 129037022 -26593098 + B3A SINE B2 1 174 -24 1 1569 219 69 0 0 chr4 129037022 129037051 -26593069 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1569 382 307 172 18 chr4 129037051 129037068 -26593052 + B3A SINE B2 175 195 -3 1 1569 1233 41 0 7 chr4 129038072 129038219 -26591901 + B1_Mm SINE Alu 2 147 0 1 1569 228 222 0 0 chr4 129039151 129039196 -26590924 + C-rich Low_complexity Low_complexity 6 50 0 1 1569 279 262 0 0 chr4 129039201 129039262 -26590858 - PB1D10 SINE Alu -26 91 31 1 1569 1253 227 43 124 chr4 129039324 129039391 -26590729 + ORR1C2 LTR MaLR 1 69 -315 1 1569 1252 48 0 0 chr4 129039391 129039538 -26590582 + B1_Mm SINE Alu 1 147 0 1 1569 1253 227 43 124 chr4 129039538 129039714 -26590406 + ORR1C2 LTR MaLR 70 195 -189 1 1569 188 0 74 0 chr4 129039714 129039741 -26590379 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 1 1569 1253 227 43 124 chr4 129039741 129039914 -26590206 + ORR1C2 LTR MaLR 196 384 0 1 1569 4569 186 179 66 chr4 129039914 129041269 -26588851 + ORR1C2-int LTR MaLR 1 1509 0 1 1569 423 207 0 47 chr4 129041934 129042020 -26588100 + ID4 SINE ID 2 83 0 1 1569 453 243 149 92 chr4 129042049 129042178 -26587942 + B4A SINE B4 85 229 -63 1 1569 724 231 0 0 chr4 129042178 129042325 -26587795 + B1_Mur1 SINE Alu 1 147 -2 1 1569 453 243 149 92 chr4 129042325 129042390 -26587730 + B4A SINE B4 230 290 -2 1 1569 266 182 15 0 chr4 129042395 129042461 -26587659 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1569 206 125 24 48 chr4 129042462 129042504 -26587616 + GA-rich Low_complexity Low_complexity 3 43 0 1 1569 211 303 77 26 chr4 129042509 129042587 -26587533 + ID4_ SINE ID 2 83 0 1 1569 290 304 14 0 chr4 129042838 129042907 -26587213 + ID2 SINE ID 1 70 -13 1 1569 191 213 0 60 chr4 129043089 129043139 -26586981 + L2 LINE L2 2330 2376 -1043 1 1569 381 207 229 16 chr4 129043215 129043361 -26586759 + B3 SINE B2 2 184 -14 1 1569 30 0 0 0 chr4 129043380 129043410 -26586710 + AT_rich Low_complexity Low_complexity 1 30 0 1 1569 1419 74 10 16 chr4 129043462 129043655 -26586465 + B2_Mm1t SINE B2 2 193 0 1 1569 612 219 23 0 chr4 129043668 129043796 -26586324 + B1_Mur4 SINE Alu 4 134 -16 1 1569 1106 79 26 132 chr4 129043807 129043935 -26586185 - B2_Mm2 SINE B2 -14 181 64 1 1569 1684 36 0 0 chr4 129043935 129044128 -26585992 + B2_Mm1a SINE B2 1 193 0 1 1569 1106 79 26 132 chr4 129044128 129044188 -26585932 - B2_Mm2 SINE B2 -132 63 13 1 1569 645 237 198 0 chr4 129044204 129044381 -26585739 + B3 SINE B2 2 213 -3 1 1569 386 109 32 11 chr4 129045026 129045119 -26585001 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 1 1569 236 172 67 22 chr4 129045138 129045227 -26584893 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1 1569 530 98 12 0 chr4 129045369 129045451 -26584669 + (TTCC)n Simple_repeat Simple_repeat 1 83 0 1 1569 316 288 93 50 chr4 129045643 129045804 -26584316 + B4 SINE B4 125 292 0 1 1569 681 125 131 15 chr4 129045945 129046075 -26584045 - B1_Mur4 SINE Alu 0 150 6 1 1569 295 243 164 27 chr4 129045989 129046099 -26584021 - MT2B LTR ERVL -344 257 133 1 1569 843 239 80 15 chr4 129046124 129046324 -26583796 + B3 SINE B2 1 213 -3 1 1569 362 282 27 0 chr4 129046757 129046867 -26583253 + PB1D10 SINE Alu 5 117 0 1 1569 296 208 194 20 chr4 129046941 129047039 -26583081 - PB1D10 SINE Alu 0 117 3 1 1569 249 336 32 71 chr4 129047347 129047501 -26582619 + LTR33B LTR ERVL 74 221 -282 1 1569 1211 29 0 0 chr4 129047597 129047734 -26582386 - B1_Mus2 SINE Alu -10 137 1 1 1569 193 298 62 87 chr4 129048069 129048201 -26581919 + MIR SINE MIR 99 228 -40 1 1569 683 141 96 52 chr4 129048251 129048386 -26581734 + B1_Mur3 SINE Alu 9 149 0 1 1569 439 247 203 17 chr4 129048384 129048553 -26581567 + B3 SINE B2 27 205 -11 1 1569 530 171 189 9 chr4 129048613 129048719 -26581401 - B1_Mur1 SINE Alu 0 149 25 1 1569 997 183 10 31 chr4 129048734 129048926 -26581194 - B3A SINE B2 0 198 11 1 1569 1413 81 38 0 chr4 129049074 129049260 -26580860 - B2_Mm1a SINE B2 0 193 1 1 1569 1216 77 30 81 chr4 129049291 129049488 -26580632 - B2_Mm2 SINE B2 -7 188 2 1 1569 1431 79 16 0 chr4 129049517 129049706 -26580414 + B2_Mm2 SINE B2 3 194 -1 1 1569 314 145 6 0 chr4 129049733 129049783 -26580337 - PB1D9 SINE Alu -96 53 2 1 1569 266 200 0 74 chr4 129049740 129049794 -26580326 - B4A SINE B4 -163 129 80 1 1569 732 136 0 9 chr4 129049813 129049924 -26580196 + B1_Mur4 SINE Alu 29 138 -12 1 1569 413 318 61 55 chr4 129049993 129050156 -26579964 - RSINE1 SINE B4 0 165 2 1 1569 385 248 184 0 chr4 129050251 129050360 -26579760 + B3 SINE B2 2 130 -86 1 1569 816 118 0 0 chr4 129050380 129050507 -26579613 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1 1569 495 266 94 15 chr4 129050718 129050920 -26579200 + ID_B1 SINE B4 2 219 -5 1 1569 1215 190 77 58 chr4 129050972 129051283 -26578837 + RLTR28B LTR ERVL 1 317 -164 1 1569 1115 73 53 0 chr4 129051283 129051433 -26578687 + B2_Mm2 SINE B2 3 160 -35 1 1569 387 0 0 0 chr4 129051438 129051481 -26578639 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1569 775 165 120 0 chr4 129051481 129051639 -26578481 + RLTR28B LTR ERVL 305 481 0 1 1569 851 288 73 88 chr4 129052282 129052629 -26577491 + MLT1A1 LTR MaLR 2 352 -56 1 1569 614 172 79 43 chr4 129052629 129052769 -26577351 - B1_Mur3 SINE Alu -2 147 3 1 1569 851 288 73 88 chr4 129052769 129052829 -26577291 + MLT1A1 LTR MaLR 353 403 -5 1 1569 944 191 58 10 chr4 129052879 129053085 -26577035 + B3 SINE B2 1 216 0 1 1569 352 233 62 37 chr4 129053135 129053261 -26576859 - L2a LINE L2 -269 3157 3025 1 1569 25 0 0 0 chr4 129053390 129053415 -26576705 + AT_rich Low_complexity Low_complexity 1 25 0 1 1569 295 217 50 0 chr4 129053416 129053476 -26576644 + ID4 SINE ID 1 63 -20 1 1569 675 21 32 0 chr4 129053479 129053572 -26576548 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 1569 511 232 220 6 chr4 129053637 129053819 -26576301 + ID_B1 SINE B4 2 222 -2 1 1569 21 0 0 0 chr4 129054567 129054588 -26575532 + GC_rich Low_complexity Low_complexity 1 21 0 1 1569 23 54 0 0 chr4 129054601 129054638 -26575482 + GC_rich Low_complexity Low_complexity 1 37 0 1 1569 25 0 0 0 chr4 129054687 129054712 -26575408 + GC_rich Low_complexity Low_complexity 1 25 0 1 1569 213 260 0 14 chr4 129054729 129054803 -26575317 + (CCG)n Simple_repeat Simple_repeat 3 75 0 2 1569 27 103 0 0 chr4 129054873 129054970 -26575150 + GC_rich Low_complexity Low_complexity 1 97 0 2 1569 225 83 0 0 chr4 129054997 129055033 -26575087 + (CTCG)n Simple_repeat Simple_repeat 3 38 0 2 1569 2094 154 62 48 chr4 129056021 129056457 -26573663 - RMER10A LTR ERVL 0 442 1 2 1569 1463 84 5 0 chr4 129056586 129056777 -26573343 + B2_Mm1t SINE B2 2 193 0 2 1569 582 116 196 0 chr4 129056790 129056902 -26573218 + B1F2 SINE Alu 3 136 -13 2 1569 180 0 0 0 chr4 129057510 129057530 -26572590 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1569 1175 68 0 13 chr4 129057549 129057698 -26572422 - B1_Mus2 SINE Alu 0 147 1 2 1569 293 384 0 0 chr4 129057701 129057826 -26572294 - PB1 SINE Alu -1 126 2 2 1569 760 237 58 34 chr4 129058210 129058415 -26571705 - B3 SINE B2 0 216 7 2 1569 1602 188 19 102 chr4 129058463 129058896 -26571224 + RMER10B LTR ERVL 2 398 0 2 1569 1073 38 84 0 chr4 129058946 129059077 -26571043 + B1_Mus2 SINE Alu 1 142 -5 2 1569 291 28 0 0 chr4 129059079 129059115 -26571005 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 2 1569 238 108 27 0 chr4 129059148 129059185 -26570935 + B1F2 SINE Alu 26 63 -86 2 1569 1321 163 30 239 chr4 129059186 129059718 -26570402 - RLTR23 LTR ERV1 0 430 10 2 1569 541 128 0 50 chr4 129059721 129059820 -26570300 + B1_Mur3 SINE Alu 56 149 0 2 1569 476 243 16 65 chr4 129059827 129059844 -26570276 + B1_Mur1 SINE Alu 1 17 -132 2 1569 1730 178 200 65 chr4 129059844 129060350 -26569770 + RMER15 LTR ERVL 2 575 0 2 1569 476 246 29 56 chr4 129060350 129060477 -26569643 + B1_Mur1 SINE Alu 13 150 0 2 1569 664 312 124 88 chr4 129060663 129061154 -26568966 + MLT1N2 LTR MaLR 7 515 -47 2 1569 1640 52 0 0 chr4 129061158 129061351 -26568769 - B2_Mm1t SINE B2 0 193 1 2 1569 364 285 154 0 chr4 129061451 129061581 -26568539 - MTD LTR MaLR -44 375 226 2 1569 225 222 0 43 chr4 129061596 129061643 -26568477 + ID_B1 SINE B4 177 221 -3 2 1569 747 308 66 28 chr4 129061805 129062047 -26568073 - RLTR18B LTR ERVK -23 489 244 2 1569 1436 44 39 0 chr4 129062047 129062228 -26567892 - B2_Mm2 SINE B2 -6 189 2 2 1569 747 308 66 28 chr4 129062228 129062272 -26567848 - RLTR18B LTR ERVK -269 243 192 2 1569 1463 77 0 5 chr4 129062418 129062613 -26567507 + B2_Mm2 SINE B2 1 194 -1 2 1569 508 300 26 7 chr4 129062694 129062845 -26567275 - RLTR18B LTR ERVK -349 163 10 2 1569 225 0 0 0 chr4 129062861 129062886 -26567234 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1569 1570 230 75 16 chr4 129062889 129063265 -26566855 + MTD LTR MaLR 13 410 -9 2 1569 297 272 108 11 chr4 129063278 129063371 -26566749 - PB1D10 SINE Alu 0 117 16 2 1569 1157 81 0 26 chr4 129063418 129063570 -26566550 - B1_Mus1 SINE Alu 0 148 1 2 1569 186 128 0 0 chr4 129063577 129063616 -26566504 + (TTTTTA)n Simple_repeat Simple_repeat 4 42 0 2 1569 1323 72 56 0 chr4 129063731 129063911 -26566209 - B2_Mm2 SINE B2 -5 190 1 2 1569 551 285 229 7 chr4 129064197 129064483 -26565637 - MER21B LTR ERV1 -158 705 356 2 1569 319 118 12 161 chr4 129064495 129064545 -26565575 - ORR1D1 LTR MaLR 0 374 330 2 1569 1546 33 0 22 chr4 129064545 129064730 -26565390 - B2_Mm1a SINE B2 -12 181 1 2 1569 319 118 12 161 chr4 129064730 129064760 -26565360 - ORR1D1 LTR MaLR -45 329 306 2 1569 694 138 195 0 chr4 129064761 129064884 -26565236 + B1_Mus2 SINE Alu 1 147 0 2 1569 1484 67 0 30 chr4 129064891 129065090 -26565030 + B2_Mm1a SINE B2 1 193 0 2 1569 367 106 0 29 chr4 129065131 129065199 -26564921 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 2 1569 826 141 123 123 chr4 129065199 129065369 -26564751 - ORR1D1 LTR MaLR -56 318 130 2 1569 761 62 259 0 chr4 129065369 129065481 -26564639 + B1_Mus1 SINE Alu 3 143 -5 2 1569 252 0 0 0 chr4 129065486 129065514 -26564606 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1569 826 187 114 117 chr4 129065514 129065627 -26564493 - ORR1D1 LTR MaLR -231 139 27 2 1569 575 318 119 9 chr4 129066051 129066270 -26563850 - MLT1G LTR MaLR -22 569 327 2 1569 428 175 103 0 chr4 129066273 129066370 -26563750 + B1_Mur2 SINE Alu 23 129 -20 2 1569 1103 84 95 6 chr4 129066485 129066501 -26563619 - B2_Mm1a SINE B2 -1 192 177 2 1569 216 0 0 0 chr4 129066501 129066525 -26563595 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2 1569 1103 84 95 6 chr4 129066525 129066676 -26563444 - B2_Mm1a SINE B2 -17 176 11 2 1569 1025 199 25 0 chr4 129066807 129067003 -26563117 + B3 SINE B2 3 203 -13 2 1569 679 160 200 0 chr4 129067005 129067130 -26562990 - B1_Mur4 SINE Alu 0 150 1 2 1569 181 57 57 0 chr4 129067142 129067177 -26562943 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1569 1096 63 7 27 chr4 129067258 129067405 -26562715 - B1_Mus1 SINE Alu 0 148 5 2 1569 554 312 54 45 chr4 129067540 129067818 -26562302 + MLT1F1 LTR MaLR 18 360 -219 2 1569 328 307 165 0 chr4 129067812 129067939 -26562181 - MTD LTR MaLR -55 364 217 2 1569 306 0 0 0 chr4 129067941 129067975 -26562145 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2 1569 1239 35 0 0 chr4 129067976 129068117 -26562003 - B1_Mus2 SINE Alu -6 141 1 2 1569 525 258 8 15 chr4 129068252 129068382 -26561738 + B3A SINE B2 28 156 -42 2 1569 339 44 0 0 chr4 129068383 129068428 -26561692 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1569 779 170 22 0 chr4 129068670 129068805 -26561315 - B1_Mur4 SINE Alu 0 150 13 2 1569 267 225 10 136 chr4 129068718 129068821 -26561299 - MT2B LTR ERVL -349 252 163 2 1569 180 0 0 0 chr4 129068822 129068842 -26561278 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1569 1198 75 0 0 chr4 129068843 129068989 -26561131 - B1_Mus2 SINE Alu 0 147 2 2 1569 437 278 91 34 chr4 129069221 129069396 -26560724 - RMER15 LTR ERVL -53 522 338 2 1569 377 343 122 117 chr4 129069691 129070077 -26560043 - RMER20B LTR ERVK -28 599 212 2 1569 259 284 0 26 chr4 129070494 129070570 -26559550 + B1F SINE Alu 10 83 -66 2 1569 656 253 27 7 chr4 129070578 129070725 -26559395 + B3A SINE B2 2 151 -47 2 1569 333 102 0 0 chr4 129070725 129070784 -26559336 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1569 228 35 0 0 chr4 129070804 129070833 -26559287 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1569 1073 103 14 0 chr4 129070845 129070990 -26559130 + B1_Mus1 SINE Alu 2 148 0 2 1569 649 63 21 0 chr4 129071016 129071111 -26559009 + (GGAGA)n Simple_repeat Simple_repeat 5 101 0 2 1569 273 218 88 35 chr4 129071211 129071325 -26558795 + MER58B DNA MER1_type 79 198 -143 2 1569 810 236 32 40 chr4 129071327 129071579 -26558541 - MTEb LTR MaLR -2 377 128 2 1569 297 348 54 48 chr4 129071608 129071774 -26558346 + MER58B DNA MER1_type 175 341 0 2 1569 284 120 0 20 chr4 129072288 129072339 -26557781 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1569 284 298 0 12 chr4 129072390 129072404 -26557716 - B4 SINE B4 -207 85 2 2 1569 307 229 0 14 chr4 129072404 129072475 -26557645 - B3A SINE B2 -127 71 2 2 1569 378 0 0 0 chr4 129072510 129072552 -26557568 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1569 373 244 0 93 chr4 129072552 129072638 -26557482 - RSINE1 SINE B4 -27 138 61 2 1569 343 202 139 20 chr4 129072651 129072680 -26557440 + ID_B1 SINE B4 105 146 -78 2 1569 347 60 20 0 chr4 129072680 129072730 -26557390 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2 1569 343 202 139 20 chr4 129072730 129072801 -26557319 + ID_B1 SINE B4 147 217 -7 2 1569 658 126 135 0 chr4 129072809 129072920 -26557200 + B1_Mur1 SINE Alu 23 148 -1 2 1569 475 316 0 0 chr4 129072951 129073068 -26557052 + RSINE1 SINE B4 2 118 -47 2 1569 835 38 0 19 chr4 129073855 129073961 -26556159 + B1_Mus2 SINE Alu 44 147 0 2 1569 1077 63 24 2 chr4 129073996 129074147 -26555973 + B1_Mus1 SINE Alu 12 311 0 2 1569 234 0 0 0 chr4 129074232 129074258 -26555862 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1569 968 203 64 5 chr4 129074686 129074889 -26555231 + B3 SINE B2 1 215 -1 2 1569 951 276 40 18 chr4 129075084 129075357 -26554763 - B4 SINE B4 0 292 14 2 1569 1332 80 15 65 chr4 129075359 129075559 -26554561 - B2_Mm2 SINE B2 -5 190 1 2 1569 563 176 126 0 chr4 129075622 129075741 -26554379 + B1_Mur4 SINE Alu 11 144 -6 2 1569 201 241 0 0 chr4 129075747 129075801 -26554319 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2 1569 475 204 26 53 chr4 129075829 129075943 -26554177 + PB1D9 SINE Alu 5 115 -5 2 1569 424 226 14 14 chr4 129075966 129076056 -26554064 + (TATG)n Simple_repeat Simple_repeat 2 92 0 2 1569 2413 105 6 0 chr4 129076056 129076381 -26553739 + ORR1A2 LTR MaLR 1 327 0 2 1569 424 226 14 14 chr4 129076381 129076429 -26553691 + (TATG)n Simple_repeat Simple_repeat 2 49 0 2 1569 371 256 0 24 chr4 129076485 129076569 -26553551 - B4 SINE B4 0 292 211 2 1569 917 229 19 0 chr4 129076575 129076780 -26553340 - B3 SINE B2 -7 209 1 2 1569 564 216 9 0 chr4 129076795 129076906 -26553214 - PB1D9 SINE Alu -7 113 2 2 1569 884 125 28 0 chr4 129077026 129077170 -26552950 + B1_Mus1 SINE Alu 1 148 0 2 1569 1001 197 38 33 chr4 129077188 129077398 -26552722 - MTC LTR MaLR -208 213 3 2 1569 340 337 0 0 chr4 129077398 129077483 -26552637 + RSINE1 SINE B4 66 150 -15 2 1569 680 237 8 0 chr4 129077528 129077659 -26552461 + B1_Mur1 SINE Alu 1 132 -17 2 1569 1215 43 0 0 chr4 129077674 129077815 -26552305 - B1_Mus1 SINE Alu -5 143 3 2 1569 244 363 152 18 chr4 129077926 129078097 -26552023 + L4 LINE RTE 1277 1470 -559 2 1569 232 235 14 88 chr4 129078290 129078384 -26551736 + AluG_3 SINE Alu 155 218 -93 2 1569 1704 50 9 31 chr4 129078392 129078621 -26551499 + LTRIS2 LTR ERV1 1 224 -340 2 1569 1216 48 7 0 chr4 129078647 129078793 -26551327 - B1_Mus2 SINE Alu 0 147 1 2 1569 425 161 0 24 chr4 129078833 129078916 -26551204 + B1_Mur4 SINE Alu 1 81 -69 2 1569 267 188 0 0 chr4 129078908 129078956 -26551164 - B4A SINE B4 -22 270 223 3 1569 837 208 24 27 chr4 129078946 129079143 -26550977 - B3 SINE B2 -1 197 8 3 1569 486 306 128 5 chr4 129079135 129079155 -26550965 - B4A SINE B4 -46 246 226 3 1569 351 0 0 0 chr4 129079155 129079194 -26550926 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1569 486 306 128 5 chr4 129079194 129079360 -26550760 - B4A SINE B4 -67 225 37 3 1569 214 152 196 0 chr4 129079508 129079554 -26550566 - B1_Mur3 SINE Alu -13 136 82 3 1569 288 282 0 0 chr4 129079554 129079671 -26550449 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 1569 372 322 0 0 chr4 129079940 129080027 -26550093 - B1F1 SINE Alu -44 105 19 3 1569 283 227 15 0 chr4 129080090 129080156 -26549964 + B4A SINE B4 3 69 -223 3 1569 404 152 62 25 chr4 129080177 129080258 -26549862 + B4 SINE B4 142 225 -67 3 1569 673 169 112 8 chr4 129080262 129080387 -26549733 + B1_Mur3 SINE Alu 1 138 -11 3 1569 1504 37 0 73 chr4 129080402 129080562 -26549558 - B2_Mm1a SINE B2 -2 191 37 3 1569 1163 38 0 0 chr4 129080562 129080695 -26549425 + B1_Mus2 SINE Alu 2 134 -13 3 1569 219 36 0 0 chr4 129080695 129080723 -26549397 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1569 1504 37 0 73 chr4 129080723 129080766 -26549354 - B2_Mm1a SINE B2 -157 36 3 3 1569 327 130 0 0 chr4 129080834 129080888 -26549232 + (ATG)n Simple_repeat Simple_repeat 1 54 0 3 1569 458 17 17 0 chr4 129081056 129081115 -26549005 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1569 372 328 8 38 chr4 129081523 129081656 -26548464 + RSINE1 SINE B4 37 165 0 3 1569 1480 73 0 5 chr4 129081719 129081912 -26548208 - B2_Mm2 SINE B2 -2 193 2 3 1569 286 308 9 37 chr4 129081936 129082044 -26548076 - PB1D10 SINE Alu 0 117 13 3 1569 927 227 15 5 chr4 129082121 129082316 -26547804 + B3A SINE B2 1 197 -1 3 1569 195 42 0 0 chr4 129082649 129082673 -26547447 + (TCC)n Simple_repeat Simple_repeat 2 25 0 3 1569 382 172 10 139 chr4 129082683 129082784 -26547336 - PB1D9 SINE Alu -31 89 2 3 1569 282 255 141 10 chr4 129082785 129082829 -26547291 - PB1D10 SINE Alu 0 117 6 3 1569 303 254 0 0 chr4 129082829 129082884 -26547236 - B4A SINE B4 -147 145 91 3 1569 222 267 22 0 chr4 129082931 129082976 -26547144 + B1F2 SINE Alu 12 57 -92 3 1569 637 279 82 48 chr4 129082998 129083292 -26546828 + L1MC4 LINE L1 6775 7078 -964 3 1569 1005 207 57 0 chr4 129083327 129083520 -26546600 + B3 SINE B2 6 209 -7 3 1569 541 259 64 29 chr4 129083593 129083764 -26546356 + L1MC4 LINE L1 7322 7498 -544 3 1569 443 268 8 61 chr4 129084080 129084211 -26545909 + ID_B1 SINE B4 82 205 -19 3 1569 1161 62 7 7 chr4 129084781 129084928 -26545192 - B1_Mm SINE Alu 0 147 1 3 1569 811 235 75 20 chr4 129085070 129085270 -26544850 - B3 SINE B2 -4 212 2 3 1569 351 222 25 0 chr4 129085277 129085358 -26544762 - ID4 SINE ID 0 83 1 3 1569 223 186 0 0 chr4 129085490 129085533 -26544587 + T-rich Low_complexity Low_complexity 1 43 0 3 1569 1429 209 90 20 chr4 129085811 129086157 -26543963 - ORR1D2 LTR MaLR 0 370 1 3 1569 1233 54 0 0 chr4 129086192 129086339 -26543781 + B1_Mus2 SINE Alu 1 147 0 3 1569 261 0 0 0 chr4 129086347 129086376 -26543744 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1569 336 102 0 0 chr4 129086378 129086427 -26543693 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 3 1569 225 0 0 0 chr4 129086967 129086992 -26543128 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1569 207 180 0 0 chr4 129086992 129087037 -26543083 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1569 180 0 0 0 chr4 129087043 129087063 -26543057 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1569 359 208 13 25 chr4 129087181 129087260 -26542860 - ORR1A3 LTR MaLR 0 326 249 3 1569 675 174 52 0 chr4 129087621 129087736 -26542384 - ETnERV2-int LTR ERVK -216 7190 7070 3 1569 4258 126 101 74 chr4 129087736 129088952 -26541168 - ORR1B1-int LTR MaLR 0 1963 8 3 1569 239 133 0 22 chr4 129088952 129088998 -26541122 + CT-rich Low_complexity Low_complexity 2 46 0 3 1569 1281 27 0 0 chr4 129089005 129089152 -26540968 - B1_Mus2 SINE Alu 0 147 1 3 1569 1496 78 5 0 chr4 129089156 129089347 -26540773 - B2_Mm1t SINE B2 -1 192 1 3 1569 1420 70 43 0 chr4 129089361 129089548 -26540572 - B2_Mm2 SINE B2 0 195 1 3 1569 1334 57 17 6 chr4 129089552 129089730 -26540390 - B2_Mm2 SINE B2 -2 193 14 3 1569 2241 198 13 168 chr4 129089736 129090488 -26539632 - ORR1B1-int LTR MaLR -922 1041 406 3 1569 323 109 345 9 chr4 129090503 129090613 -26539507 - B2_Mm2 SINE B2 -2 193 47 3 1569 665 148 56 0 chr4 129090691 129090799 -26539321 - B2_Mm1t SINE B2 -14 179 66 3 1569 1732 102 184 43 chr4 129090795 129091025 -26539095 - ORR1B1-int LTR MaLR -1590 373 96 3 1569 232 48 0 45 chr4 129091025 129091069 -26539051 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1569 1156 65 0 0 chr4 129091069 129091207 -26538913 - B1_Mus2 SINE Alu -9 138 1 3 1569 1732 102 184 43 chr4 129091207 129091302 -26538818 - ORR1B1-int LTR MaLR -1868 95 2 3 1569 348 48 0 0 chr4 129091306 129091348 -26538772 - ORR1B1 LTR MaLR -8 386 345 3 1569 1209 98 0 0 chr4 129091348 129091522 -26538598 + (TTCTC)n Simple_repeat Simple_repeat 5 178 0 3 1569 276 149 0 0 chr4 129091527 129091574 -26538546 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1569 999 83 45 0 chr4 129091578 129091711 -26538409 - B1_Mus2 SINE Alu -7 140 2 3 1569 1632 188 9 19 chr4 129091711 129092026 -26538094 - ORR1B1 LTR MaLR -42 352 41 3 1569 348 277 20 72 chr4 129092035 129092146 -26537974 - PB1D9 SINE Alu -10 139 8 3 1569 1533 34 0 22 chr4 129092223 129092405 -26537715 - B2_Mm1a SINE B2 -14 179 2 3 1569 186 71 0 0 chr4 129092439 129092467 -26537653 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 3 1569 571 184 29 0 chr4 129092472 129092575 -26537545 - PB1D9 SINE Alu -6 114 9 3 1569 268 299 45 11 chr4 129092502 129092590 -26537530 - B4 SINE B4 -123 169 79 3 1569 207 0 0 0 chr4 129092786 129092809 -26537311 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1569 1607 32 5 0 chr4 129092816 129093003 -26537117 - B2_Mm1t SINE B2 -5 188 1 3 1569 1072 67 0 36 chr4 129093073 129093213 -26536907 - B1_Mm SINE Alu -12 135 1 3 1569 626 244 45 13 chr4 129093264 129093418 -26536702 - B3 SINE B2 -13 203 45 3 1569 942 160 7 0 chr4 129093475 129093619 -26536501 - B1_Mur4 SINE Alu -4 146 2 3 1569 1153 68 7 0 chr4 129094381 129094527 -26535593 - B1_Mm SINE Alu 0 147 1 3 1569 1207 94 55 6 chr4 129094528 129094709 -26535411 - B2_Mm2 SINE B2 -1 194 5 3 1569 491 213 108 81 chr4 129095359 129095507 -26534613 - B2_Mm2 SINE B2 -17 178 27 3 1569 289 152 0 0 chr4 129095590 129095636 -26534484 - B2_Mm2 SINE B2 -48 147 102 3 1569 356 171 156 13 chr4 129095672 129095749 -26534371 - MTD LTR MaLR -53 366 279 3 1569 974 97 14 0 chr4 129095747 129095891 -26534229 - B2_Mm2 SINE B2 -48 147 2 3 1569 790 165 198 6 chr4 129095891 129096068 -26534052 - B3 SINE B2 -5 211 1 3 1569 213 39 0 0 chr4 129096076 129096102 -26534018 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1569 1671 26 0 5 chr4 129096116 129096309 -26533811 - B2_Mm1a SINE B2 0 193 2 3 1569 297 246 0 52 chr4 129096444 129096542 -26533578 + A-rich Low_complexity Low_complexity 1 92 0 3 1569 680 218 7 52 chr4 129096542 129096697 -26533423 + B1_Mur2 SINE Alu 2 149 0 3 1569 297 246 0 52 chr4 129096697 129096714 -26533406 + A-rich Low_complexity Low_complexity 93 109 0 3 1569 1916 257 102 46 chr4 129096716 129097385 -26532735 - Lx7 LINE L1 -283 7413 6708 3 1569 2273 175 140 46 chr4 129097386 129097747 -26532373 - RLTR17 LTR ERVK 0 692 297 3 1569 1631 26 16 0 chr4 129097747 129097936 -26532184 + B2_Mm1a SINE B2 2 193 0 3 1569 2273 175 140 46 chr4 129097936 129098118 -26532002 - RLTR17 LTR ERVK -396 296 98 3 1569 379 244 244 0 chr4 129098132 129098251 -26531869 - Lx7 LINE L1 -975 6721 6574 3 1569 227 31 0 0 chr4 129098251 129098283 -26531837 - B3 SINE B2 -184 32 1 3 1569 801 231 55 6 chr4 129098438 129098621 -26531499 - B3A SINE B2 -6 192 1 3 1569 1365 82 22 0 chr4 129098675 129098858 -26531262 + B2_Mm2 SINE B2 1 187 -8 3 1569 1733 21 0 0 chr4 129098877 129099070 -26531050 + B2_Mm1a SINE B2 1 193 0 3 1569 1185 68 0 7 chr4 129099081 129099228 -26530892 + B1_Mus1 SINE Alu 2 147 -1 3 1569 234 156 0 0 chr4 129099229 129099274 -26530846 + A-rich Low_complexity Low_complexity 1 45 0 3 1569 26 0 0 0 chr4 129099312 129099338 -26530782 + AT_rich Low_complexity Low_complexity 1 26 0 3 1569 1037 229 77 11 chr4 129099345 129099606 -26530514 - LTR87 LTR ERVL? -36 588 311 3 1569 390 57 0 0 chr4 129099869 129099922 -26530198 + (TCTCCC)n Simple_repeat Simple_repeat 3 55 0 3 1569 231 259 19 0 chr4 129100048 129100102 -26530018 - B1F1 SINE Alu -8 141 87 3 1569 1001 169 76 76 chr4 129100104 129100353 -26529767 - Lx7 LINE L1 -963 6733 6485 3 1569 277 68 182 0 chr4 129100354 129100398 -26529722 - PB1D9 SINE Alu -48 72 21 3 1569 286 156 0 0 chr4 129100708 129100753 -26529367 + B1_Mm SINE Alu 103 147 0 3 1569 269 163 0 0 chr4 129100788 129100831 -26529289 + ID4_ SINE ID 32 74 -9 3 1569 232 192 18 71 chr4 129100831 129100844 -26529276 + ID SINE ID 33 85 -139 3 1569 444 258 60 38 chr4 129101140 129101273 -26528847 + B1_Mur1 SINE Alu 13 148 -1 3 1569 410 222 75 2 chr4 129101427 129101530 -26528590 - B3A SINE B2 -89 127 13 3 1569 1619 220 115 64 chr4 129101571 129102022 -26528098 + RMER19C LTR ERVK 138 611 0 3 1569 485 117 0 55 chr4 129102047 129102156 -26527964 + (TTTA)n Simple_repeat Simple_repeat 1 103 0 3 1569 550 255 0 28 chr4 129102156 129102168 -26527952 - ID_B1 SINE B4 -1 223 213 3 1569 552 160 93 132 chr4 129102168 129102319 -26527801 - B1_Mur1 SINE Alu -1 148 4 3 1569 550 255 0 28 chr4 129102319 129102451 -26527669 - ID_B1 SINE B4 -12 212 83 3 1569 272 286 54 60 chr4 129102336 129102485 -26527635 - MT2B2 LTR ERVL -309 275 128 3 1569 317 235 11 66 chr4 129102580 129102671 -26527449 - RLTR25A LTR ERVK -496 607 522 3 1569 800 123 0 32 chr4 129102591 129102717 -26527403 - B1_Mm SINE Alu -22 125 4 3 1569 450 176 0 149 chr4 129102604 129102738 -26527382 - MT2B LTR ERVL -337 264 151 4 1569 228 322 65 22 chr4 129102755 129102847 -26527273 - Charlie10 DNA MER1_type -2625 197 102 4 1569 231 114 0 0 chr4 129102975 129103010 -26527110 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 4 1569 882 147 41 43 chr4 129103010 129103208 -26526912 - B3 SINE B2 0 195 2 4 1569 226 290 174 0 chr4 129103284 129103353 -26526767 - ID4_ SINE ID -1 82 2 4 1569 747 177 0 39 chr4 129103354 129103507 -26526613 + B1_Mur3 SINE Alu 2 148 -1 4 1569 210 236 71 18 chr4 129105109 129105165 -26524955 + B3A SINE B2 3 61 -137 4 1569 1165 82 0 0 chr4 129105359 129105506 -26524614 - B1_Mus2 SINE Alu 0 147 1 4 1570 216 261 14 28 chr4 129106074 129106145 -26523975 - ID2 SINE ID -11 72 3 4 1570 664 255 94 18 chr4 129106233 129106435 -26523685 - B3A SINE B2 -2 193 1 4 1570 434 190 0 0 chr4 129106750 129106829 -26523291 + ORR1D2 LTR MaLR 1 79 -291 4 1570 491 329 18 60 chr4 129107628 129107796 -26522324 - RSINE1 SINE B4 0 165 5 4 1570 232 274 184 61 chr4 129107919 129108082 -26522038 + YREP_Mm Unknown Unknown 111 293 -1519 4 1570 361 183 153 80 chr4 129107966 129107993 -26522127 - B1F SINE Alu -1 148 5 4 1570 471 178 140 0 chr4 129107993 129108100 -26522020 - ID_B1 SINE B4 -17 207 86 4 1570 492 283 42 120 chr4 129108105 129108248 -26521872 + MER2 DNA MER2_type 110 246 -99 4 1570 994 206 48 10 chr4 129108248 129108454 -26521666 - B3 SINE B2 0 216 3 4 1570 712 208 0 27 chr4 129108463 129108611 -26521509 - B1_Mur1 SINE Alu -1 148 5 4 1570 492 283 42 120 chr4 129108611 129108698 -26521422 + MER2 DNA MER2_type 249 331 -14 4 1570 308 200 139 51 chr4 129108824 129108903 -26521217 - PB1D9 SINE Alu -33 87 2 4 1570 650 256 32 54 chr4 129108905 129109087 -26521033 + B4A SINE B4 51 228 -64 4 1570 877 246 62 0 chr4 129109087 129109266 -26520854 + B3 SINE B2 1 190 -26 4 1570 240 246 0 0 chr4 129110069 129110126 -26519994 + (CCG)n Simple_repeat Simple_repeat 2 58 0 4 1570 496 218 253 0 chr4 129110615 129110789 -26519331 - ID_B1 SINE B4 -3 221 4 4 1570 677 254 55 20 chr4 129110840 129111041 -26519079 + B3 SINE B2 4 211 -5 4 1570 1284 81 6 0 chr4 129111160 129111333 -26518787 + B2_Mm2 SINE B2 2 175 -20 4 1570 412 262 29 19 chr4 129111418 129111512 -26518608 + PB1D7 SINE Alu 11 107 -13 4 1570 237 83 0 0 chr4 129111512 129111548 -26518572 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1570 857 236 10 35 chr4 129111548 129111750 -26518370 + B3A SINE B2 2 198 0 4 1570 919 127 67 0 chr4 129111757 129111891 -26518229 + B1_Mur4 SINE Alu 1 143 -7 4 1570 259 200 0 0 chr4 129111919 129111959 -26518161 + B1F2 SINE Alu 23 62 -87 4 1570 25 31 0 0 chr4 129111959 129111991 -26518129 + AT_rich Low_complexity Low_complexity 1 32 0 4 1570 1316 72 55 0 chr4 129111991 129112172 -26517948 + B2_Mm2 SINE B2 2 192 -3 4 1570 298 224 77 71 chr4 129112173 129112341 -26517779 + RLTR21 LTR ERVK 1086 1254 -318 4 1570 364 308 49 76 chr4 129112319 129112463 -26517657 - RSINE1 SINE B4 0 165 26 4 1570 210 192 36 71 chr4 129112503 129112559 -26517561 + PB1D10 SINE Alu 64 117 0 4 1570 605 259 61 75 chr4 129112559 129112772 -26517348 + ID_B1 SINE B4 3 212 -12 4 1570 414 0 0 0 chr4 129112772 129112818 -26517302 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 1570 1211 61 0 0 chr4 129112957 129113104 -26517016 - B1_Mm SINE Alu 0 147 1 4 1570 1060 91 0 258 chr4 129113122 129113374 -26516746 - B2_Mm2 SINE B2 -6 189 3 4 1570 217 336 31 47 chr4 129114001 129114129 -26515991 + L2c LINE L2 3257 3382 -5 4 1570 243 0 0 0 chr4 129114396 129114423 -26515697 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1570 430 282 73 0 chr4 129114444 129114552 -26515568 - RSINE1 SINE B4 -15 150 35 4 1570 3171 116 4 38 chr4 129114552 129115056 -26515064 + RLTR1C LTR ERV1 1 487 -16 4 1570 875 194 21 0 chr4 129115165 129115309 -26514811 - B1_Mur4 SINE Alu -3 147 1 4 1570 698 251 79 6 chr4 129115332 129115496 -26514624 - B3 SINE B2 -40 176 1 4 1570 1156 44 0 0 chr4 129115859 129115994 -26514126 + B1_Mus2 SINE Alu 1 135 -12 4 1570 261 0 0 0 chr4 129115995 129116024 -26514096 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1570 1039 213 5 11 chr4 129116046 129116231 -26513889 + B3 SINE B2 16 199 -17 4 1570 291 232 29 0 chr4 129116489 129116558 -26513562 + PB1D10 SINE Alu 1 71 -46 4 1570 255 330 90 0 chr4 129116558 129116589 -26513531 + ID_B1 SINE B4 82 190 -34 4 1570 620 262 0 0 chr4 129116743 129116869 -26513251 + RSINE1 SINE B4 3 128 -37 4 1570 219 36 0 0 chr4 129116887 129116915 -26513205 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 1570 309 235 99 0 chr4 129116945 129117026 -26513094 + B1_Mus1 SINE Alu 1 89 -59 4 1570 240 250 83 0 chr4 129117011 129117071 -26513049 - B4 SINE B4 -134 158 94 4 1570 204 328 76 0 chr4 129117189 129117309 -26512811 - MIRc SINE MIR -40 228 92 4 1570 193 67 0 100 chr4 129118393 129118443 -26511677 + A-rich Low_complexity Low_complexity 3 47 0 4 1570 643 269 22 33 chr4 129118892 129119073 -26511047 + B3A SINE B2 1 179 -19 4 1570 1306 92 43 5 chr4 129119099 129119284 -26510836 - B2_Mm2 SINE B2 0 195 4 4 1570 695 208 44 38 chr4 129119415 129119575 -26510545 - B3 SINE B2 -52 164 4 4 1570 657 145 154 0 chr4 129119639 129119756 -26510364 - B1_Mur3 SINE Alu -11 138 4 4 1570 180 345 26 58 chr4 129120174 129120328 -26509792 + L2b LINE L2 2945 3093 -282 4 1570 4308 36 4 2 chr4 129120889 129121391 -26508729 - RLTR1C LTR ERV1 0 503 1 4 1570 653 13 0 0 chr4 129121391 129121470 -26508650 - RLTR1B-int LTR ERV1 0 3299 3221 4 1570 1844 89 0 0 chr4 129121524 129121771 -26508349 - MMVL30-int LTR ERV1 -68 3630 3384 4 1570 183 133 89 0 chr4 129121820 129121865 -26508255 + MIR SINE MIR 99 147 -115 4 1570 351 0 0 0 chr4 129121877 129121916 -26508204 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1570 369 0 0 0 chr4 129121916 129121956 -26508164 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1570 644 151 61 120 chr4 129122059 129122337 -26507783 - MMVL30-int LTR ERV1 -2187 1511 960 4 1570 5027 85 0 1 chr4 129122399 129123082 -26507038 - MMVL30-int LTR ERV1 -2245 1453 772 4 1570 222 105 0 0 chr4 129123499 129123537 -26506583 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 4 1570 450 262 14 21 chr4 129123574 129123718 -26506402 - MMVL30-int LTR ERV1 -7023 533 391 4 1570 1861 124 7 0 chr4 129123765 129124063 -26506057 - MMVL30-int LTR ERV1 -7256 300 1 4 1570 4116 48 8 4 chr4 129124063 129124562 -26505558 - RLTR1C LTR ERV1 0 503 3 4 1570 1153 74 0 0 chr4 129124598 129124746 -26505374 - B1_Mus1 SINE Alu 0 148 1 4 1570 375 156 0 15 chr4 129125389 129125454 -26504666 + RLTR19-int LTR ERVK 4043 4106 -2031 4 1570 4694 152 56 87 chr4 129125689 129126613 -26503507 + RMER19B LTR ERVK 1 896 -6 4 1570 677 190 17 0 chr4 129126614 129126730 -26503390 - B1_Mus2 SINE Alu -29 118 1 4 1570 2715 46 10 7 chr4 129127135 129127492 -26502628 + MT-int LTR MaLR 703 1240 -340 4 1570 384 22 0 0 chr4 129127749 129127794 -26502326 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1570 1423 67 6 0 chr4 129127794 129127973 -26502147 - B2_Mm1a SINE B2 -12 181 2 4 1570 1144 69 14 0 chr4 129128005 129128150 -26501970 + B1_Mus2 SINE Alu 1 147 0 4 1570 185 0 40 0 chr4 129128163 129128188 -26501932 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1570 832 122 8 16 chr4 129128196 129128321 -26501799 - B2_Mm2 SINE B2 -70 125 2 4 1570 295 157 56 0 chr4 129128402 129128491 -26501629 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1570 186 43 0 0 chr4 129128503 129128526 -26501594 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1570 1223 61 0 0 chr4 129128526 129128673 -26501447 - B1_Mus1 SINE Alu 0 148 2 4 1570 1343 78 33 0 chr4 129129217 129129397 -26500723 + B2_Mm2 SINE B2 1 186 -9 4 1570 2519 156 35 78 chr4 129129650 129130186 -26499934 + RLTR28 LTR ERVL 1 513 -11 4 1570 1177 69 14 0 chr4 129130515 129130660 -26499460 + B1_Mus1 SINE Alu 1 147 -1 4 1570 492 193 312 0 chr4 129130690 129130799 -26499321 + B1_Mur3 SINE Alu 3 145 -4 4 1570 1367 222 286 17 chr4 129130821 129131254 -26498866 - RMER15 LTR ERVL 0 575 27 4 1570 397 322 8 25 chr4 129131521 129131642 -26498478 + RMER10B LTR ERVL 269 387 -11 4 1570 801 234 51 47 chr4 129131677 129131892 -26498228 - B3 SINE B2 0 216 1 4 1570 1216 69 0 0 chr4 129131979 129132124 -26497996 - B1_Mus2 SINE Alu -2 145 1 4 1570 367 303 77 7 chr4 129132303 129132446 -26497674 - RSINE1 SINE B4 -10 155 3 4 1570 198 0 0 0 chr4 129132954 129132976 -26497144 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 1570 895 133 0 7 chr4 129132977 129133113 -26497007 - B1_Mus1 SINE Alu -8 140 6 4 1570 351 229 25 118 chr4 129133014 129133133 -26496987 - MT2B LTR ERVL -344 257 150 4 1570 353 221 68 195 chr4 129133269 129133679 -26496441 - RLTR15 LTR ERVK 0 359 2 4 1570 1151 62 7 0 chr4 129133890 129134036 -26496084 - B1_Mus1 SINE Alu -1 147 1 4 1570 740 293 38 14 chr4 129134055 129134158 -26495962 - B3 SINE B2 0 216 108 4 1570 2055 169 52 6 chr4 129134158 129134521 -26495599 + RLTR14 LTR ERV1 3 382 0 4 1570 740 293 38 14 chr4 129134521 129134628 -26495492 - B3 SINE B2 -109 107 1 4 1570 1354 75 32 11 chr4 129134779 129134967 -26495153 + B2_Mm1t SINE B2 2 193 0 4 1570 590 236 31 16 chr4 129135025 129135154 -26494966 - B1_Mur1 SINE Alu -7 142 12 4 1570 357 336 0 32 chr4 129135154 129135179 -26494941 - ID_B1 SINE B4 -7 217 69 4 1570 590 225 67 0 chr4 129135356 129135476 -26494644 - B3 SINE B2 -47 169 42 5 1570 218 56 28 0 chr4 129135476 129135512 -26494608 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 5 1570 877 110 0 73 chr4 129135594 129135731 -26494389 + U1 snRNA snRNA 1 127 -38 5 1570 195 114 0 0 chr4 129135799 129135834 -26494286 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1570 1289 27 0 0 chr4 129135834 129135980 -26494140 - B1_Mm SINE Alu 0 147 2 5 1570 1291 103 32 0 chr4 129135984 129136169 -26493951 - B2_Mm1t SINE B2 -2 191 1 5 1570 300 196 102 59 chr4 129136324 129136385 -26493735 - B1_Mur2 SINE Alu 0 120 52 5 1570 4650 53 28 5 chr4 129136385 129136959 -26493161 + LTRIS_Mus LTR ERV1 1 587 0 5 1570 300 195 85 61 chr4 129136959 129136993 -26493127 - B1_Mur2 SINE Alu -98 51 17 5 1570 299 315 48 53 chr4 129136994 129137192 -26492928 - L2c LINE L2 -252 3123 2918 5 1570 516 268 43 67 chr4 129137267 129137431 -26492689 + ID_B1 SINE B4 2 161 -63 5 1570 2616 42 0 12 chr4 129137656 129138028 -26492092 - L1Md_F3 LINE L1 0 6584 6236 5 1570 193 310 88 52 chr4 129139390 129139526 -26490594 - L2b LINE L2 -2 3373 3233 5 1570 201 111 43 43 chr4 129139938 129139985 -26490135 + T-rich Low_complexity Low_complexity 3 49 0 5 1570 806 115 7 51 chr4 129140277 129140414 -26489706 - B1_Mur2 SINE Alu -1 148 18 5 1570 291 248 58 123 chr4 129140305 129140443 -26489677 - MT2B LTR ERVL -321 280 152 5 1570 288 0 0 0 chr4 129140448 129140480 -26489640 + (TTC)n Simple_repeat Simple_repeat 2 33 0 5 1570 230 244 186 0 chr4 129140483 129140569 -26489551 + MIR SINE MIR 125 226 -36 5 1570 182 276 37 82 chr4 129141065 129141199 -26488921 + L2 LINE L2 1953 2080 -1339 5 1570 308 183 31 77 chr4 129141690 129141755 -26488365 + ID_B1 SINE B4 84 145 -79 5 1570 300 250 37 62 chr4 129141755 129141770 -26488350 + PB1D10 SINE Alu 3 80 -37 5 1570 657 99 130 35 chr4 129142060 129142175 -26487945 + B1_Mus1 SINE Alu 23 148 0 5 1570 616 256 2 68 chr4 129142865 129143042 -26487078 + B3A SINE B2 36 194 -1 5 1570 198 0 0 0 chr4 129143485 129143507 -26486613 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1570 617 287 113 19 chr4 129143550 129143816 -26486304 - B4 SINE B4 0 292 2 5 1570 376 205 54 93 chr4 129144403 129144532 -26485588 - B1_Mur4 SINE Alu -4 146 23 5 1570 266 255 20 0 chr4 129145303 129145354 -26484766 - ID4 SINE ID -30 53 2 5 1570 693 191 51 7 chr4 129145401 129145538 -26484582 - B1_Mus2 SINE Alu -4 143 1 5 1570 914 137 13 20 chr4 129145604 129145753 -26484367 - B1_Mus1 SINE Alu 0 148 1 5 1570 674 213 36 29 chr4 129145773 129145913 -26484207 - B1_Mur1 SINE Alu 0 149 9 5 1570 363 304 80 0 chr4 129145816 129145928 -26484192 - B4 SINE B4 -95 197 77 5 1570 1097 92 116 0 chr4 129146845 129147009 -26483111 + B2_Mm1t SINE B2 2 184 -9 5 1570 306 389 9 9 chr4 129147211 129147320 -26482800 + ID_B1 SINE B4 85 193 -31 5 1570 383 290 31 31 chr4 129147229 129147357 -26482763 + B1F SINE Alu 22 149 0 5 1570 239 321 0 0 chr4 129147370 129147423 -26482697 + ID4_ SINE ID 30 82 -1 5 1570 221 390 15 70 chr4 129147373 129147574 -26482546 + ID_B1 SINE B4 34 223 -1 5 1570 471 230 0 39 chr4 129147473 129147577 -26482543 + B1_Mus2 SINE Alu 46 145 -2 5 1570 1137 88 0 7 chr4 129147582 129147730 -26482390 + B1_Mus1 SINE Alu 2 148 0 5 1570 183 114 0 0 chr4 129147733 129147768 -26482352 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1570 1255 70 69 6 chr4 129147817 129147990 -26482130 + B2_Mm2 SINE B2 2 185 -10 5 1570 734 231 0 39 chr4 129148004 129148157 -26481963 + B1_Mur1 SINE Alu 2 148 -1 5 1570 1112 87 7 0 chr4 129148535 129148685 -26481435 + B2_Mm2 SINE B2 2 152 -43 5 1570 717 45 0 0 chr4 129148686 129148775 -26481345 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 5 1570 198 71 0 0 chr4 129149775 129149803 -26480317 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 5 1570 534 190 118 23 chr4 129150305 129150428 -26479692 + B1_Mur1 SINE Alu 17 146 -3 5 1570 1622 32 11 0 chr4 129150445 129150634 -26479486 + B2_Mm1t SINE B2 2 192 -1 5 1570 446 245 250 6 chr4 129151754 129151910 -26478210 - B3 SINE B2 -22 194 1 5 1570 207 0 0 0 chr4 129151922 129151945 -26478175 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1570 1093 81 0 0 chr4 129151946 129152082 -26478038 - B1_Mus1 SINE Alu -12 136 1 5 1570 304 226 271 25 chr4 129152086 129152204 -26477916 - B1F SINE Alu -1 148 2 5 1570 23 0 0 0 chr4 129152216 129152239 -26477881 + AT_rich Low_complexity Low_complexity 1 23 0 5 1570 1775 10 0 0 chr4 129152277 129152470 -26477650 - B2_Mm1a SINE B2 0 193 1 5 1570 1078 89 0 64 chr4 129152550 129152706 -26477414 - B1_Mus2 SINE Alu 0 147 2 5 1570 341 342 23 14 chr4 129152750 129152899 -26477221 - MIR SINE MIR -113 155 5 5 1570 650 213 8 0 chr4 129153674 129153796 -26476324 - B1_Mur1 SINE Alu -1 148 26 5 1570 1537 39 50 0 chr4 129153827 129154009 -26476111 - B2_Mm2 SINE B2 -2 193 3 5 1570 316 262 12 12 chr4 129154092 129154177 -26475943 + MIRc SINE MIR 67 151 -117 5 1570 668 232 186 0 chr4 129154246 129154423 -26475697 - MTD LTR MaLR -23 396 187 5 1570 755 103 0 0 chr4 129154553 129154660 -26475460 - B2_Mm2 SINE B2 -88 107 1 5 1570 530 261 95 53 chr4 129154661 129154851 -26475269 - MTD LTR MaLR -210 209 12 5 1570 441 200 173 0 chr4 129155016 129155126 -26474994 + B1_Mus1 SINE Alu 5 133 -15 5 1570 524 314 47 21 chr4 129155154 129155346 -26474774 + B3A SINE B2 1 197 -1 5 1570 344 286 50 50 chr4 129155536 129155601 -26474519 - B1_Mur2 SINE Alu -7 142 81 5 1570 669 267 16 31 chr4 129155601 129155794 -26474326 - B3A SINE B2 -6 192 3 5 1570 344 286 50 50 chr4 129155794 129155868 -26474252 - B1_Mur2 SINE Alu -69 80 3 5 1570 207 402 10 10 chr4 129155875 129155978 -26474142 - L2 LINE L2 -2122 1297 1195 5 1570 345 281 67 0 chr4 129156129 129156218 -26473902 + B3 SINE B2 113 207 -9 5 1570 704 261 22 22 chr4 129156235 129156415 -26473705 + B3A SINE B2 2 181 -17 5 1570 392 221 195 0 chr4 129156436 129156549 -26473571 + B1_Mur3 SINE Alu 2 136 -13 5 1570 225 0 0 0 chr4 129156549 129156574 -26473546 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1570 1205 136 43 30 chr4 129156606 129156841 -26473279 - Lx LINE L1 -5 6649 6412 5 1570 1358 54 36 46 chr4 129156917 129157112 -26473008 - B2_Mm2 SINE B2 0 195 3 5 1570 323 325 23 77 chr4 129157243 129157373 -26472747 - B1F2 SINE Alu -19 130 8 5 1570 550 271 109 46 chr4 129157264 129157438 -26472682 - ID_B1 SINE B4 -34 190 6 5 1570 1118 74 7 26 chr4 129157465 129157618 -26472502 + B1_Mur4 SINE Alu 1 150 0 5 1570 893 199 0 0 chr4 129157671 129157817 -26472303 - B1_Mus1 SINE Alu -1 147 2 5 1570 378 203 208 38 chr4 129157824 129157845 -26472275 - B2_Mm2 SINE B2 -3 192 168 5 1570 1003 205 14 19 chr4 129157845 129158059 -26472061 - B3 SINE B2 -3 213 1 5 1570 390 203 208 38 chr4 129158059 129158196 -26471924 - B3A SINE B2 -28 167 7 5 1570 439 156 0 0 chr4 129158209 129158273 -26471847 - ID_B1 SINE B4 -71 153 90 5 1570 197 303 111 11 chr4 129159274 129159364 -26470756 + MER5A DNA MER1_type 64 162 -27 5 1570 613 250 151 11 chr4 129159392 129159578 -26470542 - ID_B1 SINE B4 -9 215 4 5 1570 233 357 79 18 chr4 129159765 129159879 -26470241 - MER58B DNA MER1_type -14 327 207 5 1570 979 86 0 41 chr4 129159925 129160070 -26470050 - B1_Mus2 SINE Alu 0 147 9 5 1570 441 194 0 104 chr4 129159975 129160090 -26470030 - MT2B LTR ERVL -344 257 155 5 1570 804 245 49 24 chr4 129160160 129160365 -26469755 - B3 SINE B2 0 216 7 5 1570 722 232 5 86 chr4 129160399 129160597 -26469523 - B3A SINE B2 -16 182 1 5 1570 549 0 0 0 chr4 129160609 129160670 -26469450 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1570 1166 62 0 7 chr4 129160749 129160896 -26469224 + B1_Mm SINE Alu 2 147 0 5 1570 396 232 0 0 chr4 129160914 129160983 -26469137 - RSINE1 SINE B4 -95 70 2 5 1570 235 327 149 0 chr4 129161254 129161361 -26468759 + ID_B1 SINE B4 20 142 -82 5 1570 211 116 0 140 chr4 129161434 129161484 -26468636 + B1_Mur1 SINE Alu 76 118 -31 5 1570 295 213 204 41 chr4 129161649 129161747 -26468373 + B1_Mur2 SINE Alu 36 149 0 5 1570 334 215 325 13 chr4 129161761 129161901 -26468219 - ID_B1 SINE B4 -33 191 8 5 1570 1046 68 180 0 chr4 129162014 129162175 -26467945 + B2_Mm2 SINE B2 2 191 -4 5 1570 228 238 75 106 chr4 129162670 129162764 -26467356 + B1F1 SINE Alu 7 97 -52 5 1570 189 280 53 13 chr4 129162834 129162910 -26467210 + MIRb SINE MIR 131 209 -59 5 1570 637 191 20 58 chr4 129163011 129163164 -26466956 + B1_Mur4 SINE Alu 2 150 0 5 1570 307 353 29 98 chr4 129163164 129163184 -26466936 + B4A SINE B4 87 247 -45 5 1570 447 261 2 38 chr4 129163254 129163384 -26466736 - B1F SINE Alu 0 120 5 5 1570 268 274 0 16 chr4 129163522 129163585 -26466535 + ID4 SINE ID 3 64 -19 5 1570 936 138 7 14 chr4 129163796 129163943 -26466177 + B1_Mur4 SINE Alu 1 146 -4 5 1570 25 0 0 0 chr4 129165558 129165583 -26464537 + AT_rich Low_complexity Low_complexity 1 25 0 5 1570 216 0 0 0 chr4 129167331 129167355 -26462765 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1570 1106 55 7 14 chr4 129167358 129167506 -26462614 - B1_Mm SINE Alu 0 147 1 6 1570 207 0 0 0 chr4 129169520 129169543 -26460577 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1570 1264 44 0 0 chr4 129169551 129169710 -26460410 + B2_Mm1t SINE B2 2 160 -33 6 1570 302 0 0 26 chr4 129169710 129169749 -26460371 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 1570 650 225 154 5 chr4 129169935 129170123 -26459997 - B3 SINE B2 0 216 1 6 1570 571 190 12 4 chr4 129170139 129170257 -26459863 - B1_Mm SINE Alu 0 120 4 6 1570 347 257 17 92 chr4 129170154 129170274 -26459846 - MT2B LTR ERVL -338 263 153 6 1570 269 289 89 0 chr4 129170490 129170580 -26459540 - PB1D10 SINE Alu -6 111 14 6 1570 288 236 0 0 chr4 129170832 129170887 -26459233 - ID_B1 SINE B4 -15 209 155 6 1570 235 330 56 19 chr4 129170887 129170940 -26459180 - B1F1 SINE Alu -15 134 23 6 1570 1235 62 79 6 chr4 129171017 129171194 -26458926 + B2_Mm2 SINE B2 2 191 -4 6 1570 225 0 0 0 chr4 129171196 129171221 -26458899 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1570 1119 137 49 0 chr4 129171233 129171416 -26458704 + B2_Mm2 SINE B2 3 194 -1 6 1570 1860 123 32 62 chr4 129171445 129171783 -26458337 + ORR1A4 LTR MaLR 1 328 -1 6 1570 224 0 0 61 chr4 129171784 129171817 -26458303 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1570 1148 42 0 7 chr4 129171828 129171972 -26458148 - B1_Mus2 SINE Alu -4 143 1 6 1570 653 269 91 0 chr4 129172067 129172242 -26457878 - B3 SINE B2 -25 191 1 6 1570 277 272 68 0 chr4 129172265 129172368 -26457752 - PB1D10 SINE Alu -7 110 1 6 1570 399 301 0 10 chr4 129173689 129173811 -26456309 + MIRb SINE MIR 3 129 -139 6 1570 1007 90 0 0 chr4 129174567 129174711 -26455409 - B1_Mus2 SINE Alu -2 145 2 6 1570 182 317 95 24 chr4 129175204 129175288 -26454832 - L2 LINE L2 -607 2812 2723 6 1570 335 260 22 59 chr4 129175375 129175397 -26454723 + MT2B LTR ERVL 147 163 -438 6 1570 624 203 64 14 chr4 129175397 129175537 -26454583 + B1_Mus2 SINE Alu 1 147 0 6 1570 690 100 0 0 chr4 129175596 129175696 -26454424 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 6 1570 823 219 96 5 chr4 129175734 129175931 -26454189 + B3 SINE B2 2 216 0 6 1570 439 281 182 61 chr4 129176154 129176545 -26453575 - L2 LINE L2 -1237 2182 1745 6 1570 872 94 8 0 chr4 129176968 129177096 -26453024 - B1_Mus2 SINE Alu -11 136 8 6 1570 21 0 0 0 chr4 129178195 129178216 -26451904 + GC_rich Low_complexity Low_complexity 1 21 0 6 1570 201 74 0 0 chr4 129178557 129178584 -26451536 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1570 185 180 20 0 chr4 129178746 129178796 -26451324 + T-rich Low_complexity Low_complexity 2 52 0 6 1570 1048 52 0 7 chr4 129179058 129179193 -26450927 + B1_Mus2 SINE Alu 1 134 -13 6 1570 336 215 0 0 chr4 129179256 129179321 -26450799 + B2_Mm2 SINE B2 3 67 -128 6 1570 373 119 68 23 chr4 129179423 129179519 -26450601 + B1_Mur3 SINE Alu 10 145 -4 6 1570 205 139 252 0 chr4 129179955 129180022 -26450098 + L2a LINE L2 3366 3418 -8 6 1570 243 0 0 0 chr4 129181155 129181182 -26448938 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1570 594 175 133 16 chr4 129181881 129182009 -26448111 + B1_Mur1 SINE Alu 2 144 -5 6 1570 270 81 0 0 chr4 129182158 129182195 -26447925 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1570 1082 97 0 7 chr4 129182198 129182344 -26447776 - B1_Mus2 SINE Alu -1 146 2 6 1570 441 0 0 0 chr4 129182597 129182646 -26447474 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 6 1570 194 111 0 62 chr4 129183545 129183593 -26446527 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 6 1570 745 155 11 21 chr4 129183607 129183753 -26446367 - B1_Mur4 SINE Alu 0 150 2 6 1570 231 286 294 0 chr4 129184307 129184433 -26445687 + RSINE1 SINE B4 3 165 0 6 1570 225 218 0 0 chr4 129184476 129184554 -26445566 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1570 370 313 35 9 chr4 129184562 129184580 -26445540 + L1MEg LINE L1 1853 1871 -4213 6 1570 1159 62 0 0 chr4 129184580 129184726 -26445394 + B1_Mus2 SINE Alu 2 147 0 6 1570 370 313 35 9 chr4 129184726 129184823 -26445297 + L1MEg LINE L1 1872 1970 -4114 6 1570 255 325 0 24 chr4 129185028 129185110 -26445010 - MIR SINE MIR -67 195 116 6 1570 567 0 0 0 chr4 129185983 129186046 -26444074 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1570 315 0 0 0 chr4 129187223 129187258 -26442862 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1570 1040 78 28 0 chr4 129187284 129187426 -26442694 - B1_Mus2 SINE Alu 0 147 2 6 1570 1004 188 93 5 chr4 129187446 129187639 -26442481 - B3 SINE B2 -5 211 2 6 1570 450 0 0 0 chr4 129187648 129187698 -26442422 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 6 1570 575 254 22 0 chr4 129187698 129187832 -26442288 - B1_Mur2 SINE Alu -11 138 2 6 1570 1011 248 65 63 chr4 129187977 129188345 -26441775 - MTD LTR MaLR -39 380 19 6 1570 243 88 0 0 chr4 129188628 129188662 -26441458 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1570 612 27 0 0 chr4 129190124 129190198 -26439922 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1570 188 0 74 0 chr4 129190207 129190234 -26439886 + (CAGAGA)n Simple_repeat Simple_repeat 3 31 0 6 1570 201 94 0 0 chr4 129190415 129190447 -26439673 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1570 23 86 0 0 chr4 129191184 129191242 -26438878 + GC_rich Low_complexity Low_complexity 1 58 0 6 1570 24 53 0 0 chr4 129191372 129191410 -26438710 + GC_rich Low_complexity Low_complexity 1 38 0 6 1570 21 0 0 0 chr4 129193760 129193781 -26436339 + AT_rich Low_complexity Low_complexity 1 21 0 6 1570 253 179 36 0 chr4 129194820 129194876 -26435244 + ID4_ SINE ID 17 74 -9 6 1570 726 134 18 0 chr4 129195594 129195706 -26434414 - PB1D9 SINE Alu -6 114 1 6 1570 1517 21 16 11 chr4 129196725 129196916 -26433204 - B2_Mm1a SINE B2 0 193 2 6 1570 495 158 97 32 chr4 129197054 129197178 -26432942 + B1_Mur2 SINE Alu 2 133 -16 6 1570 507 259 94 33 chr4 129197199 129197411 -26432709 + L1M3e LINE L1 1727 1951 -5079 6 1570 1187 34 0 0 chr4 129197413 129197560 -26432560 + B1_Mus2 SINE Alu 1 147 0 6 1570 2050 168 145 56 chr4 129197796 129197914 -26432206 + RMER15 LTR ERVL 33 155 -420 6 1570 807 40 0 0 chr4 129197914 129198013 -26432107 + (GAAAA)n Simple_repeat Simple_repeat 2 100 0 6 1570 2050 168 145 56 chr4 129198013 129198392 -26431728 + RMER15 LTR ERVL 156 573 -2 6 1570 638 223 21 14 chr4 129200487 129200628 -26429492 + B1_Mur4 SINE Alu 9 150 0 6 1570 427 263 111 88 chr4 129200680 129200851 -26429269 - B3 SINE B2 -17 199 25 6 1570 1618 26 0 0 chr4 129201619 129201811 -26428309 - B2_Mm1a SINE B2 0 193 2 6 1570 366 275 11 21 chr4 129201992 129202101 -26428019 - PB1 SINE Alu -7 120 10 6 1570 236 291 87 10 chr4 129202197 129202301 -26427819 - MIRb SINE MIR -50 218 107 6 1570 316 245 78 0 chr4 129202349 129202451 -26427669 - MIRb SINE MIR -48 220 111 6 1570 314 286 99 52 chr4 129202533 129202725 -26427395 - MIRb SINE MIR -53 215 15 6 1570 278 301 129 50 chr4 129203057 129203197 -26426923 + RSINE1 SINE B4 15 165 0 6 1570 299 240 142 19 chr4 129203499 129203605 -26426515 + ID_B1 SINE B4 99 217 -7 6 1570 234 273 8 83 chr4 129203630 129203750 -26426370 + PB1D9 SINE Alu 8 118 -2 6 1570 302 148 0 53 chr4 129203961 129204018 -26426102 - B1_Mur1 SINE Alu 0 149 96 6 1570 331 255 21 31 chr4 129204121 129204218 -26425902 - PB1D10 SINE Alu -1 116 21 6 1570 1119 48 7 14 chr4 129204454 129204602 -26425518 + B1_Mus1 SINE Alu 2 148 0 6 1570 873 112 191 0 chr4 129204702 129204854 -26425266 - B2_Mm2 SINE B2 -14 181 1 6 1570 441 282 59 20 chr4 129205106 129205258 -26424862 + RSINE1 SINE B4 8 165 0 6 1570 180 143 0 0 chr4 129205263 129205305 -26424815 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1570 1554 21 0 16 chr4 129206395 129206586 -26423534 + B2_Mm1t SINE B2 2 189 -4 6 1570 472 86 37 0 chr4 129206634 129206715 -26423405 + L1Md_F2 LINE L1 6499 6582 0 6 1570 490 206 61 45 chr4 129206728 129206860 -26423260 - B1_Mur3 SINE Alu -10 139 6 6 1570 430 263 48 68 chr4 129206986 129207133 -26422987 - B3 SINE B2 -25 191 48 6 1570 211 111 43 22 chr4 129207399 129207445 -26422675 + A-rich Low_complexity Low_complexity 2 48 0 6 1570 458 156 52 0 chr4 129207453 129207549 -26422571 + PB1D9 SINE Alu 20 120 0 6 1570 1129 54 0 26 chr4 129207584 129207735 -26422385 - B1_Mm SINE Alu 0 147 1 6 1570 292 45 0 0 chr4 129207765 129207809 -26422311 - B1_Mur4 SINE Alu 0 150 107 6 1570 370 256 118 22 chr4 129207833 129207969 -26422151 - RSINE1 SINE B4 -3 162 14 6 1570 265 228 0 3 chr4 129208092 129208154 -26421966 - B1_Mur2 SINE Alu -7 142 50 6 1570 180 132 0 86 chr4 129208327 129208342 -26421778 + polypurine Low_complexity Low_complexity 3 17 0 6 1570 1103 62 0 0 chr4 129208342 129208486 -26421634 + B1_Mus1 SINE Alu 1 144 -4 6 1570 180 132 0 86 chr4 129208486 129208528 -26421592 + GA-rich Low_complexity Low_complexity 18 55 0 6 1570 1221 92 0 0 chr4 129208531 129208704 -26421416 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 6 1570 211 135 0 26 chr4 129208704 129208742 -26421378 + GA-rich Low_complexity Low_complexity 1 37 0 6 1570 295 331 86 86 chr4 129209062 129209224 -26420896 + ID_B1 SINE B4 2 163 -61 6 1570 351 0 0 0 chr4 129209481 129209520 -26420600 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1570 647 64 259 27 chr4 129209520 129209632 -26420488 - B1_Mus1 SINE Alu -10 138 1 7 1570 1151 117 32 0 chr4 129209648 129209836 -26420284 - B2_Mm2 SINE B2 0 195 2 7 1570 551 253 19 64 chr4 129209840 129209996 -26420124 - B1_Mur1 SINE Alu 0 149 1 7 1570 213 328 17 17 chr4 129210028 129210085 -26420035 + ID_B1 SINE B4 35 91 -133 7 1570 1022 81 60 0 chr4 129210085 129210234 -26419886 + B2_Mm2 SINE B2 1 158 -37 7 1570 429 36 0 0 chr4 129210235 129210290 -26419830 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1570 253 236 66 22 chr4 129210294 129210385 -26419735 + ID_B1 SINE B4 106 200 -24 7 1570 270 292 29 59 chr4 129210370 129210472 -26419648 + PB1D7 SINE Alu 21 119 -1 7 1570 244 305 37 0 chr4 129210637 129210719 -26419401 + MER102b DNA MER1_type 96 180 -161 7 1570 228 317 69 35 chr4 129210789 129210933 -26419187 + ID_B1 SINE B4 69 217 -7 7 1570 333 157 95 12 chr4 129210943 129211027 -26419093 - PB1D9 SINE Alu -21 99 9 7 1570 231 200 139 12 chr4 129210961 129211047 -26419073 - B4 SINE B4 -126 166 70 7 1570 296 296 120 0 chr4 129211283 129211391 -26418729 - ID_B1 SINE B4 0 224 104 7 1570 1183 55 0 0 chr4 129211628 129211774 -26418346 + B1_Mus2 SINE Alu 1 146 -1 7 1570 689 127 36 0 chr4 129212029 129212139 -26417981 - B1_Mus1 SINE Alu -13 135 22 7 1570 669 129 180 24 chr4 129212184 129212332 -26417788 + B2_Mm2 SINE B2 2 178 -17 7 1570 1574 27 0 0 chr4 129212332 129212519 -26417601 + B2_Mm1a SINE B2 1 187 -6 7 1570 669 129 180 24 chr4 129212519 129212537 -26417583 + B2_Mm2 SINE B2 179 194 -1 7 1570 541 223 18 42 chr4 129212537 129212720 -26417400 - B3 SINE B2 -13 180 2 7 1570 2047 193 53 8 chr4 129213221 129213618 -26416502 + MTC LTR MaLR 1 415 -6 7 1570 492 236 6 178 chr4 129213787 129213967 -26416153 + B1F1 SINE Alu 1 149 0 7 1570 1002 61 53 0 chr4 129213971 129214103 -26416017 + B1_Mus1 SINE Alu 1 139 -9 7 1570 234 81 0 0 chr4 129214119 129214156 -26415964 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1570 318 300 8 76 chr4 129214470 129214524 -26415596 - PB1D10 SINE Alu -6 111 61 7 1570 916 134 116 0 chr4 129214524 129214696 -26415424 + B2_Mm2 SINE B2 2 193 -2 7 1570 318 300 8 76 chr4 129214696 129214760 -26415360 - PB1D10 SINE Alu -57 60 1 7 1570 1139 29 0 0 chr4 129214876 129215014 -26415106 + B1_Mm SINE Alu 5 142 -5 7 1570 208 242 75 15 chr4 129215084 129215151 -26414969 - MIRc SINE MIR -147 121 51 7 1570 229 298 149 0 chr4 129215321 129215415 -26414705 - PB1D7 SINE Alu -12 108 1 7 1570 326 191 121 22 chr4 129215492 129215583 -26414537 + B1_Mur4 SINE Alu 34 133 -17 7 1570 593 227 63 7 chr4 129215704 129215846 -26414274 + B1_Mur4 SINE Alu 1 150 0 7 1570 274 195 0 25 chr4 129215850 129215929 -26414191 + GA-rich Low_complexity Low_complexity 4 80 0 7 1570 221 320 0 25 chr4 129216105 129216185 -26413935 - B1_Mus1 SINE Alu -41 107 30 7 1570 476 188 29 83 chr4 129216397 129216544 -26413576 - B1_Mus1 SINE Alu 0 148 10 7 1570 1153 54 0 0 chr4 129216598 129216745 -26413375 + B1_Mus2 SINE Alu 1 147 0 7 1570 459 248 0 9 chr4 129216784 129216894 -26413226 + PB1D9 SINE Alu 5 113 -7 7 1570 1085 82 0 0 chr4 129216908 129217054 -26413066 + B1_Mus1 SINE Alu 1 146 -2 7 1570 291 220 87 11 chr4 129217134 129217226 -26412894 + B1_Mur2 SINE Alu 13 111 -38 7 1570 532 284 112 0 chr4 129217226 129217395 -26412725 - B3 SINE B2 -10 206 19 7 1570 690 267 11 6 chr4 129217397 129217578 -26412542 - B3A SINE B2 -16 182 1 7 1570 722 177 0 24 chr4 129217613 129217764 -26412356 + B1_Mur3 SINE Alu 2 148 -1 7 1570 244 104 62 0 chr4 129217764 129217812 -26412308 + Lx9 LINE L1 7588 7638 -6 7 1570 1114 87 93 0 chr4 129217818 129217990 -26412130 + B2_Mm2 SINE B2 1 188 -7 7 1570 764 94 17 0 chr4 129218090 129218198 -26411922 + B1_Mus1 SINE Alu 30 139 -9 7 1570 221 0 0 33 chr4 129218198 129218228 -26411892 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 7 1570 227 343 42 99 chr4 129218236 129218247 -26411873 + B4A SINE B4 71 122 -170 7 1570 373 178 18 106 chr4 129218247 129218360 -26411760 + MT2B LTR ERVL 155 257 -344 7 1570 664 123 59 44 chr4 129218268 129218404 -26411716 + B1_Mur3 SINE Alu 12 149 0 7 1570 227 343 42 99 chr4 129218404 129218427 -26411693 + B4A SINE B4 123 250 -42 7 1570 322 292 75 75 chr4 129218546 129218705 -26411415 + B4 SINE B4 65 223 -69 7 1570 655 196 29 7 chr4 129218569 129218708 -26411412 + B1_Mur4 SINE Alu 9 150 0 7 1570 211 289 72 0 chr4 129218929 129219012 -26411108 + PB1D10 SINE Alu 24 112 -5 7 1570 222 254 0 0 chr4 129219867 129219922 -26410198 + (CCCG)n Simple_repeat Simple_repeat 4 58 0 7 1570 250 282 63 53 chr4 129220198 129220331 -26409789 - MIR3 SINE MIR -21 187 59 7 1570 550 195 17 17 chr4 129220457 129220577 -26409543 + PB1D9 SINE Alu 1 120 0 7 1570 316 154 10 71 chr4 129220924 129220946 -26409174 - B2_Mm1t SINE B2 -1 192 171 7 1570 1028 83 7 0 chr4 129220946 129221091 -26409029 - B1_Mm SINE Alu -1 146 1 7 1570 316 154 10 71 chr4 129221091 129221106 -26409014 - B2_Mm1t SINE B2 -23 170 156 7 1570 243 0 0 0 chr4 129221106 129221133 -26408987 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1570 316 154 10 71 chr4 129221133 129221192 -26408928 - B2_Mm1t SINE B2 -38 155 102 7 1570 214 154 26 0 chr4 129221204 129221243 -26408877 - B1_Mus2 SINE Alu -73 74 35 7 1570 825 129 0 0 chr4 129221243 129221367 -26408753 + B1_Mm SINE Alu 11 134 -13 7 1570 356 241 165 47 chr4 129221443 129221613 -26408507 - MER20 DNA MER1_type 0 219 30 7 1570 216 0 0 0 chr4 129221732 129221756 -26408364 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1570 542 239 92 0 chr4 129221764 129221894 -26408226 + B1_Mur2 SINE Alu 1 142 -7 7 1570 284 232 0 0 chr4 129222201 129222257 -26407863 - Charlie8 DNA MER1_type 0 2428 2373 7 1570 515 325 98 83 chr4 129222256 129222726 -26407394 - Charlie8 DNA MER1_type -1907 521 45 7 1570 270 278 103 0 chr4 129222737 129222834 -26407286 + PB1D10 SINE Alu 10 116 -1 7 1570 260 325 23 68 chr4 129222834 129222869 -26407251 + ID_B1 SINE B4 91 216 -8 7 1570 397 121 0 0 chr4 129222951 129223009 -26407111 + B2_Mm2 SINE B2 1 58 -137 7 1570 1127 74 0 39 chr4 129223009 129223163 -26406957 + B1_Mus1 SINE Alu 1 148 0 7 1570 1286 68 11 0 chr4 129223163 129223340 -26406780 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 1570 931 35 0 0 chr4 129223456 129223570 -26406550 + B1_Mus2 SINE Alu 34 147 0 7 1570 222 37 0 0 chr4 129223570 129223597 -26406523 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1570 470 250 6 195 chr4 129223616 129223790 -26406330 + RSINE1 SINE B4 25 165 0 7 1570 315 0 0 0 chr4 129224218 129224253 -26405867 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1570 688 189 169 11 chr4 129224281 129224458 -26405662 + B3 SINE B2 12 216 0 7 1570 222 37 0 0 chr4 129224515 129224542 -26405578 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1570 1168 61 0 39 chr4 129224542 129224695 -26405425 - B1_Mm SINE Alu 0 147 1 7 1570 870 167 15 0 chr4 129224741 129224873 -26405247 - B1_Mus1 SINE Alu -12 136 3 7 1570 468 0 0 0 chr4 129224875 129224927 -26405193 + (ATTG)n Simple_repeat Simple_repeat 2 53 0 7 1570 1749 113 41 82 chr4 129224927 129225146 -26404974 + RLTR19B LTR ERVK 329 522 -193 7 1570 1199 68 0 0 chr4 129225146 129225294 -26404826 - B1_Mus1 SINE Alu 0 148 1 7 1570 1749 113 41 82 chr4 129225294 129225392 -26404728 + RLTR19B LTR ERVK 523 633 -82 7 1570 290 300 0 43 chr4 129225599 129225693 -26404427 - L2c LINE L2 -5 3382 3293 7 1570 986 110 6 0 chr4 129226350 129226514 -26403606 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 7 1570 717 156 148 0 chr4 129226517 129226645 -26403475 - B1_Mus2 SINE Alu 0 147 1 7 1570 977 241 40 0 chr4 129226649 129226848 -26403272 - B3 SINE B2 -9 207 1 7 1570 827 144 0 15 chr4 129226899 129227033 -26403087 + B1_Mur4 SINE Alu 19 150 0 7 1570 279 0 0 0 chr4 129227035 129227066 -26403054 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 7 1570 256 259 57 80 chr4 129227069 129227157 -26402963 - RSINE1 SINE B4 -68 97 12 7 1570 636 270 84 42 chr4 129227842 129228055 -26402065 + ID_B1 SINE B4 3 224 0 7 1570 300 250 15 15 chr4 129228055 129228120 -26402000 + L1MCc LINE L1 1331 1395 -5028 7 1570 188 273 91 0 chr4 129228242 129228308 -26401812 - MIRc SINE MIR -124 144 73 7 1570 811 156 16 8 chr4 129228355 129228484 -26401636 + B1_Mus1 SINE Alu 2 131 -17 7 1570 529 179 214 0 chr4 129230821 129230933 -26399187 + B1_Mus1 SINE Alu 1 136 -12 7 1570 714 222 0 14 chr4 129230980 129231126 -26398994 + B1_Mur4 SINE Alu 2 145 -5 7 1570 314 185 15 44 chr4 129231129 129231197 -26398923 + B1_Mur4 SINE Alu 2 67 -83 7 1570 255 248 70 79 chr4 129231139 129231253 -26398867 + MT2B2 LTR ERVL 175 287 -297 7 1570 257 259 26 0 chr4 129231213 129231329 -26398791 + ORR1B1-int LTR MaLR 635 753 -756 7 1570 1122 44 0 0 chr4 129231228 129231364 -26398756 + B1_Mm SINE Alu 6 141 -6 7 1570 939 78 0 0 chr4 129231366 129231495 -26398625 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 7 1570 479 272 50 75 chr4 129231564 129231723 -26398397 + B4 SINE B4 65 219 -73 7 1570 894 148 0 0 chr4 129231595 129231730 -26398390 + B1_Mus1 SINE Alu 14 148 0 7 1570 1285 28 0 0 chr4 129231732 129231877 -26398243 + B1_Mus2 SINE Alu 1 145 -2 7 1570 183 80 0 0 chr4 129231884 129231909 -26398211 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1570 680 260 0 20 chr4 129232132 129232281 -26397839 - RSINE1 SINE B4 -17 148 3 7 1570 212 331 115 46 chr4 129232289 129232419 -26397701 - MIR SINE MIR -119 143 5 7 1570 734 181 123 0 chr4 129232424 129232562 -26397558 + B3 SINE B2 2 156 -60 8 1570 665 180 70 0 chr4 129234039 129234167 -26395953 - B1_Mus2 SINE Alu 0 147 11 8 1570 201 39 0 0 chr4 129234548 129234574 -26395546 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1570 199 256 73 85 chr4 129235041 129235170 -26394950 + MIRb SINE MIR 46 171 -91 8 1570 263 281 43 53 chr4 129236077 129236171 -26393949 - Charlie15a DNA MER1_type -22 202 110 8 1570 457 250 39 86 chr4 129236274 129236456 -26393664 - B1_Mur1 SINE Alu -1 146 8 8 1570 204 67 0 0 chr4 129236516 129236546 -26393574 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1570 220 65 0 0 chr4 129236564 129236595 -26393525 + PB1D7 SINE Alu 85 115 -5 8 1570 252 0 0 0 chr4 129236599 129236627 -26393493 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 1570 1282 48 0 18 chr4 129236627 129236798 -26393322 + B2_Mm2 SINE B2 27 194 -1 8 1570 1141 72 0 0 chr4 129236800 129236938 -26393182 + B1_Mus2 SINE Alu 1 138 -9 8 1570 198 0 0 0 chr4 129236938 129236960 -26393160 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1571 348 317 10 0 chr4 129237081 129237185 -26392935 - PB1 SINE Alu 0 127 23 8 1571 463 221 179 34 chr4 129237399 129237516 -26392604 + ID_B1 SINE B4 84 217 -7 8 1571 557 222 78 30 chr4 129237911 129238078 -26392042 + ID_B1 SINE B4 1 175 -49 8 1571 365 226 65 0 chr4 129237999 129238092 -26392028 + PB1D10 SINE Alu 12 110 -7 8 1571 358 238 9 65 chr4 129238110 129238218 -26391902 + MT2B LTR ERVL 163 264 -337 8 1571 963 50 0 0 chr4 129238132 129238253 -26391867 + B1_Mus2 SINE Alu 27 147 0 8 1571 1156 102 0 17 chr4 129238253 129238493 -26391627 + (GAAA)n Simple_repeat Simple_repeat 1 235 0 8 1571 1532 32 0 21 chr4 129238780 129238971 -26391149 + B2_Mm1t SINE B2 6 192 -1 8 1571 451 288 55 41 chr4 129239012 129239157 -26390963 + B1_Mur1 SINE Alu 3 149 0 8 1571 253 122 0 0 chr4 129239199 129239240 -26390880 + B3A SINE B2 1 41 -157 8 1571 872 154 8 0 chr4 129239444 129239574 -26390546 + B1_Mur3 SINE Alu 3 133 -16 8 1571 1147 61 61 0 chr4 129239574 129239722 -26390398 + B2_Mm2 SINE B2 2 158 -37 8 1571 351 0 0 0 chr4 129239723 129239762 -26390358 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 8 1571 325 0 44 0 chr4 129239770 129239815 -26390305 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1571 719 246 0 7 chr4 129239815 129239954 -26390166 + RSINE1 SINE B4 4 141 -24 8 1571 282 361 104 87 chr4 129239825 129239998 -26390122 + B3 SINE B2 13 188 -28 8 1571 261 83 0 0 chr4 129240002 129240038 -26390082 + (TAGG)n Simple_repeat Simple_repeat 1 36 0 8 1571 1110 70 76 0 chr4 129240084 129240242 -26389878 + B2_Mm2 SINE B2 21 190 -5 8 1571 1410 90 37 0 chr4 129240319 129240507 -26389613 + B2_Mm2 SINE B2 1 195 0 8 1571 371 279 67 0 chr4 129240535 129240639 -26389481 + PB1D7 SINE Alu 1 111 -9 8 1571 480 319 35 0 chr4 129240660 129240804 -26389316 + RSINE1 SINE B4 5 153 -12 8 1571 376 262 235 74 chr4 129240825 129241021 -26389099 + B4 SINE B4 3 249 -43 8 1571 929 156 0 26 chr4 129241021 129241172 -26388948 + B1_Mur2 SINE Alu 3 149 0 8 1571 376 262 235 74 chr4 129241172 129241218 -26388902 + B4 SINE B4 250 284 -8 8 1571 588 284 69 23 chr4 129241271 129241444 -26388676 + B3A SINE B2 2 182 -16 8 1571 554 232 79 14 chr4 129241580 129241720 -26388400 + B1_Mur2 SINE Alu 1 149 0 8 1571 209 83 28 0 chr4 129241722 129241758 -26388362 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1571 695 217 7 20 chr4 129241941 129242087 -26388033 + B1_Mur1 SINE Alu 2 145 -4 8 1571 1134 122 0 0 chr4 129242103 129242283 -26387837 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1571 261 57 0 0 chr4 129242295 129242330 -26387790 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1571 855 222 17 34 chr4 129242668 129242845 -26387275 + B3 SINE B2 3 176 -40 8 1571 32 0 0 0 chr4 129242847 129242879 -26387241 + AT_rich Low_complexity Low_complexity 1 32 0 8 1571 556 179 125 0 chr4 129243359 129243471 -26386649 + B1_Mur1 SINE Alu 18 143 -6 8 1571 485 254 66 73 chr4 129243512 129243648 -26386472 - RSINE1 SINE B4 0 165 31 8 1571 216 0 0 0 chr4 129243687 129243711 -26386409 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 8 1571 1230 34 7 0 chr4 129243711 129243857 -26386263 - B1_Mus2 SINE Alu 0 147 1 8 1571 910 122 13 52 chr4 129244052 129244207 -26385913 + B1_Mur4 SINE Alu 1 149 -1 8 1571 365 288 9 46 chr4 129244468 129244577 -26385543 - B1_Mur1 SINE Alu -40 109 5 8 1571 271 254 0 0 chr4 129244682 129244737 -26385383 - ID4_ SINE ID -25 58 4 8 1571 1197 62 0 0 chr4 129244755 129244901 -26385219 + B1_Mm SINE Alu 2 147 0 8 1571 312 281 0 0 chr4 129245327 129245494 -26384626 + (CA)n Simple_repeat Simple_repeat 1 167 0 8 1571 451 259 0 51 chr4 129245496 129245614 -26384506 - PB1D10 SINE Alu -5 112 1 8 1571 450 279 36 9 chr4 129245808 129245920 -26384200 - ID_B1 SINE B4 -27 197 83 8 1571 273 238 35 71 chr4 129245988 129246101 -26384019 - RLTR25B LTR ERVK -478 550 442 8 1571 708 86 0 0 chr4 129246049 129246142 -26383978 - B1_Mus1 SINE Alu -55 93 1 8 1571 326 241 72 0 chr4 129246143 129246226 -26383894 - MER113 DNA MER1_type -104 417 329 8 1571 594 60 0 0 chr4 129246368 129246451 -26383669 + (TC)n Simple_repeat Simple_repeat 2 84 0 8 1571 564 306 139 18 chr4 129246451 129246674 -26383446 - B4A SINE B4 -15 277 28 8 1571 594 0 0 0 chr4 129246674 129246740 -26383380 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 8 1571 1383 80 0 6 chr4 129246758 129246934 -26383186 - B2_Mm2 SINE B2 -18 177 3 8 1571 704 138 0 0 chr4 129247028 129247137 -26382983 - B1_Mur3 SINE Alu 0 149 41 8 1571 364 350 59 44 chr4 129247574 129247777 -26382343 - MIRb SINE MIR -36 232 27 8 1571 210 71 0 0 chr4 129248013 129248041 -26382079 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1571 198 0 0 0 chr4 129248418 129248440 -26381680 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1571 354 270 40 31 chr4 129248785 129248885 -26381235 - PB1D10 SINE Alu -5 112 14 8 1571 192 381 76 41 chr4 129249110 129249255 -26380865 - MIRb SINE MIR -20 248 99 8 1571 396 0 0 0 chr4 129249295 129249339 -26380781 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1571 264 343 71 43 chr4 129251046 129251161 -26378959 + B4 SINE B4 73 192 -100 8 1571 195 129 0 0 chr4 129251161 129251192 -26378928 + (CAT)n Simple_repeat Simple_repeat 2 32 0 8 1571 264 343 71 43 chr4 129251192 129251216 -26378904 + B4 SINE B4 193 215 -77 8 1571 475 189 105 0 chr4 129251207 129251302 -26378818 - B1_Mur2 SINE Alu -5 144 40 8 1571 798 203 0 0 chr4 129251724 129251857 -26378263 + B1_Mur2 SINE Alu 5 137 -12 8 1571 539 29 14 0 chr4 129251857 129251926 -26378194 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 8 1571 854 140 0 6 chr4 129251937 129252117 -26378003 + (CATA)n Simple_repeat Simple_repeat 2 180 0 8 1571 1064 24 54 0 chr4 129252120 129252286 -26377834 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 8 1571 1423 29 6 11 chr4 129253068 129253081 -26377039 - B2_Mm1a SINE B2 -19 174 161 8 1571 543 43 0 0 chr4 129253081 129253151 -26376969 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 8 1571 1423 29 6 11 chr4 129253151 129253312 -26376808 - B2_Mm1a SINE B2 -33 160 1 8 1571 491 216 0 20 chr4 129253346 129253445 -26376675 - B1_Mur3 SINE Alu 0 149 53 8 1571 647 176 133 30 chr4 129253495 129253630 -26376490 + B1_Mur2 SINE Alu 1 149 0 8 1571 204 163 0 0 chr4 129253632 129253675 -26376445 + A-rich Low_complexity Low_complexity 1 43 0 8 1571 512 220 172 13 chr4 129253772 129253932 -26376188 + B3A SINE B2 1 182 -13 8 1571 1248 167 0 67 chr4 129254915 129255153 -26374967 - URR1A DNA MER1_type 0 226 5 8 1571 202 245 211 0 chr4 129256064 129256169 -26373951 + MIR SINE MIR 1 129 -139 8 1571 1027 149 0 0 chr4 129256386 129256534 -26373586 - B1_Mur4 SINE Alu 0 150 3 8 1571 237 254 60 0 chr4 129256585 129256652 -26373468 + ID4 SINE ID 2 72 -11 8 1571 260 152 0 21 chr4 129256655 129256702 -26373418 + GA-rich Low_complexity Low_complexity 2 47 0 8 1571 483 155 0 0 chr4 129256702 129256805 -26373315 + L1_Mus2 LINE L1 6464 6566 0 8 1571 1130 88 0 7 chr4 129256810 129256958 -26373162 + B1_Mm SINE Alu 1 147 0 8 1571 409 161 23 0 chr4 129256967 129257054 -26373066 + GA-rich Low_complexity Low_complexity 3 91 0 8 1571 285 221 0 0 chr4 129257259 129257327 -26372793 + GA-rich Low_complexity Low_complexity 3 70 0 8 1571 654 13 0 0 chr4 129257477 129257552 -26372568 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1571 311 260 104 0 chr4 129257576 129257653 -26372467 - B1F SINE Alu 0 149 65 8 1571 390 271 58 36 chr4 129257819 129257957 -26372163 - MER5A DNA MER1_type 0 189 49 8 1571 1539 53 0 16 chr4 129257962 129258154 -26371966 + B2_Mm1t SINE B2 1 189 -4 8 1571 259 250 190 0 chr4 129258209 129258309 -26371811 - PB1D7 SINE Alu -1 119 1 8 1571 398 231 129 24 chr4 129258465 129258589 -26371531 - L1MA5 LINE L1 -469 5831 5695 8 1571 322 306 55 47 chr4 129258837 129258964 -26371156 - RMER10A LTR ERVL -310 132 5 8 1571 414 213 104 124 chr4 129259050 129259074 -26371046 - B2_Mm2 SINE B2 -6 189 166 8 1571 1037 52 66 0 chr4 129259074 129259210 -26370910 - B1_Mus2 SINE Alu -2 145 1 8 1571 453 213 104 124 chr4 129259210 129259378 -26370742 - B3 SINE B2 -30 165 1 8 1571 268 273 0 15 chr4 129259619 129259686 -26370434 - RSINE1 SINE B4 -93 72 7 8 1571 861 159 19 26 chr4 129259684 129259839 -26370281 - B2_Mm2 SINE B2 -41 154 1 8 1571 1550 61 0 0 chr4 129259884 129260080 -26370040 + MTB LTR MaLR 1 196 -204 9 1571 1140 94 6 25 chr4 129260080 129260243 -26369877 + B2_Mm1a SINE B2 1 160 -33 9 1571 255 31 0 0 chr4 129260243 129260275 -26369845 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 9 1571 693 0 0 0 chr4 129260278 129260355 -26369765 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 9 1571 1393 72 56 5 chr4 129260355 129260550 -26369570 + MTB LTR MaLR 193 397 -3 9 1571 1237 41 0 0 chr4 129260550 129260696 -26369424 + B1_Mm SINE Alu 2 147 0 9 1571 280 221 22 96 chr4 129260740 129260875 -26369245 - L1MA5 LINE L1 -2469 5413 5291 8 1571 1458 62 17 0 chr4 129260927 129261106 -26369014 + B2_Mm2 SINE B2 2 183 -12 9 1571 1186 55 0 27 chr4 129261106 129261256 -26368864 - B1_Mus2 SINE Alu 0 147 2 9 1571 27 0 0 0 chr4 129261256 129261283 -26368837 + AT_rich Low_complexity Low_complexity 1 27 0 9 1571 747 190 160 16 chr4 129261284 129261471 -26368649 + B3 SINE B2 1 214 -2 9 1571 868 48 184 8 chr4 129262945 129263070 -26367050 + B1_Mus1 SINE Alu 2 148 0 9 1571 218 56 28 0 chr4 129263070 129263106 -26367014 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 9 1571 887 96 195 19 chr4 129263390 129263549 -26366571 - B2_Mm1a SINE B2 -6 187 1 9 1571 1341 116 0 0 chr4 129263565 129263594 -26366526 - B2_Mm1a SINE B2 -3 190 162 9 1571 258 32 0 0 chr4 129263594 129263625 -26366495 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 9 1571 1341 116 0 0 chr4 129263625 129263785 -26366335 - B2_Mm1a SINE B2 -32 161 2 9 1571 1118 95 0 0 chr4 129263822 129263969 -26366151 - B1_Mus1 SINE Alu 0 148 2 9 1571 303 175 0 0 chr4 129264572 129264629 -26365491 + T-rich Low_complexity Low_complexity 1 57 0 9 1571 1103 102 0 0 chr4 129264629 129264776 -26365344 - B1_Mus2 SINE Alu 0 147 1 9 1571 181 191 149 0 chr4 129265054 129265101 -26365019 - L2 LINE L2 -1406 2013 1960 9 1571 2591 134 10 0 chr4 129265275 129265663 -26364457 + ORR1B1 LTR MaLR 3 394 0 9 1571 336 24 0 0 chr4 129266083 129266124 -26363996 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1571 663 13 0 0 chr4 129266124 129266199 -26363921 + (GA)n Simple_repeat Simple_repeat 2 77 0 9 1571 568 231 16 0 chr4 129266956 129267068 -26363052 + ORR1C1 LTR MaLR 1 114 -264 9 1571 3356 121 156 11 chr4 129267068 129267714 -26362406 + RMER6A LTR ERVK 1 740 -16 9 1571 1067 171 93 73 chr4 129267706 129267915 -26362205 + ORR1C1 LTR MaLR 107 323 -55 9 1571 993 70 70 0 chr4 129267915 129268044 -26362076 + B1_Mus2 SINE Alu 1 138 -9 9 1571 207 0 0 0 chr4 129268044 129268067 -26362053 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1571 1067 171 93 73 chr4 129268067 129268115 -26362005 + ORR1C1 LTR MaLR 324 369 -9 9 1571 561 309 44 74 chr4 129268119 129268322 -26361798 + ID_B1 SINE B4 24 220 -4 9 1571 715 194 62 8 chr4 129268194 129268324 -26361796 + B1_Mur4 SINE Alu 11 147 -3 9 1571 455 188 20 30 chr4 129268357 129268375 -26361745 + B4 SINE B4 70 86 -206 9 1571 666 59 0 0 chr4 129268375 129268460 -26361660 + B1_Mus1 SINE Alu 1 85 -63 9 1571 659 240 8 8 chr4 129268467 129268593 -26361527 + B3 SINE B2 30 155 -61 9 1571 221 256 0 0 chr4 129268737 129268780 -26361340 - B3A SINE B2 -95 103 61 9 1571 289 238 114 76 chr4 129269923 129270055 -26360065 - ID_B1 SINE B4 -5 219 83 9 1571 441 0 0 0 chr4 129270882 129270931 -26359189 + (GGA)n Simple_repeat Simple_repeat 1 49 0 9 1571 861 247 0 31 chr4 129271109 129271301 -26358819 - B3A SINE B2 -8 190 5 9 1571 674 205 31 0 chr4 129271387 129271514 -26358606 - B1_Mur3 SINE Alu 0 149 19 9 1571 361 211 92 99 chr4 129271418 129271560 -26358560 - MT2B LTR ERVL -333 268 128 9 1571 1680 26 0 0 chr4 129271617 129271806 -26358314 - B2_Mm1a SINE B2 -3 190 2 9 1571 549 274 64 59 chr4 129271864 129272066 -26358054 - B3 SINE B2 -13 203 1 9 1571 987 93 28 14 chr4 129273058 129273186 -26356934 + B1_Mus1 SINE Alu 5 136 -12 9 1571 258 32 0 0 chr4 129273186 129273217 -26356903 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 9 1571 987 93 28 14 chr4 129273217 129273230 -26356890 + B1_Mus1 SINE Alu 137 148 0 9 1571 713 229 113 15 chr4 129273247 129273442 -26356678 + B3 SINE B2 3 216 0 9 1571 587 267 165 0 chr4 129273459 129273635 -26356485 + B3 SINE B2 4 208 -8 9 1571 272 190 69 0 chr4 129273743 129273801 -26356319 - B1F2 SINE Alu -87 62 1 9 1571 846 179 130 5 chr4 129274211 129274396 -26355724 + B3 SINE B2 2 209 -7 9 1571 741 272 77 40 chr4 129274399 129274621 -26355499 + B4A SINE B4 2 231 -61 9 1571 1259 86 48 0 chr4 129274621 129274807 -26355313 + B2_Mm2 SINE B2 1 195 0 9 1571 354 234 16 0 chr4 129274821 129274885 -26355235 + B1_Mur4 SINE Alu 1 65 -85 9 1571 180 0 0 0 chr4 129274885 129274905 -26355215 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1571 398 200 98 20 chr4 129274915 129274927 -26355193 + B1_Mur2 SINE Alu 40 51 -98 9 1571 1218 62 0 0 chr4 129274927 129275071 -26355049 - B1_Mm SINE Alu -2 145 2 9 1571 398 200 98 20 chr4 129275071 129275160 -26354960 + B1_Mur2 SINE Alu 52 149 0 9 1571 1471 73 15 15 chr4 129275164 129275359 -26354761 + B2_Mm2 SINE B2 1 195 0 9 1571 243 0 0 0 chr4 129275395 129275422 -26354698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1571 932 193 29 44 chr4 129275422 129275628 -26354492 + B3 SINE B2 4 206 -10 9 1571 750 96 178 31 chr4 129275638 129275767 -26354353 + B1_Mus1 SINE Alu 1 148 0 9 1571 241 215 0 97 chr4 129275767 129275870 -26354250 + A-rich Low_complexity Low_complexity 1 93 0 9 1571 223 308 77 0 chr4 129276579 129276644 -26353476 + MIR SINE MIR 29 98 -110 9 1571 1276 168 5 9 chr4 129276673 129276883 -26353237 + B3 SINE B2 2 210 -6 9 1571 336 172 17 0 chr4 129276932 129276990 -26353130 + B1F1 SINE Alu 2 60 -89 9 1571 247 282 28 0 chr4 129276937 129277008 -26353112 + B4A SINE B4 92 164 -128 9 1571 374 289 95 65 chr4 129277096 129277296 -26352824 - MIRb SINE MIR -21 247 42 9 1571 30 45 0 0 chr4 129277592 129277636 -26352484 + GC_rich Low_complexity Low_complexity 1 44 0 9 1571 392 294 85 43 chr4 129278444 129278632 -26351488 + MIRb SINE MIR 73 268 0 9 1571 687 102 158 0 chr4 129278633 129278760 -26351360 - B1_Mus1 SINE Alu -1 147 1 9 1571 1083 109 0 6 chr4 129279218 129279384 -26350736 + URR1A DNA MER1_type 57 221 -5 9 1571 411 326 44 0 chr4 129279783 129279918 -26350202 - RSINE1 SINE B4 -8 157 17 9 1571 661 130 9 0 chr4 129280350 129280458 -26349662 - RMER6C LTR ERVK 0 690 582 9 1571 561 93 124 0 chr4 129280449 129280546 -26349574 + B2_Mm2 SINE B2 59 167 -28 9 1571 243 0 0 0 chr4 129280551 129280578 -26349542 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1571 298 75 18 36 chr4 129280607 129280662 -26349458 + (TCTCCC)n Simple_repeat Simple_repeat 2 55 0 9 1571 296 277 77 85 chr4 129280681 129280811 -26349309 + B1F SINE Alu 15 143 -6 9 1571 270 216 152 20 chr4 129280860 129280959 -26349161 + ID_B1 SINE B4 82 193 -31 9 1571 258 192 247 0 chr4 129280955 129281028 -26349092 - B3 SINE B2 -121 95 5 9 1571 255 301 179 29 chr4 129281056 129281196 -26348924 - RSINE1 SINE B4 -3 162 2 9 1571 517 231 112 0 chr4 129281438 129281572 -26348548 - B1_Mur3 SINE Alu 0 149 1 9 1571 533 215 74 0 chr4 129281576 129281697 -26348423 - B1F SINE Alu -7 142 13 9 1571 323 282 132 24 chr4 129281738 129281905 -26348215 + B2_Mm2 SINE B2 8 192 -3 9 1571 1286 141 115 4 chr4 129281910 129282145 -26347975 + Lx4B LINE L1 6794 7054 -4 9 1571 1187 63 0 6 chr4 129282971 129283131 -26346989 + B2_Mm1t SINE B2 2 160 -33 9 1571 453 19 0 0 chr4 129283131 129283185 -26346935 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 9 1571 1205 34 0 0 chr4 129283324 129283471 -26346649 - B1_Mus1 SINE Alu 0 148 2 9 1571 359 217 37 6 chr4 129283777 129283878 -26346242 - PB1D10 SINE Alu -22 127 23 9 1571 536 221 23 16 chr4 129283912 129284041 -26346079 - B1_Mus2 SINE Alu 0 147 18 9 1571 1056 36 50 0 chr4 129284050 129284189 -26345931 + B1_Mus2 SINE Alu 2 147 0 9 1571 1142 28 14 0 chr4 129284980 129285125 -26344995 + B1_Mus2 SINE Alu 1 147 0 9 1571 969 118 35 0 chr4 129285221 129285365 -26344755 + B1_Mur3 SINE Alu 1 149 0 9 1571 342 181 55 14 chr4 129286564 129286637 -26343483 + RSINE1 SINE B4 80 155 -10 9 1571 514 193 15 120 chr4 129289216 129289257 -26340863 + B1_Mur1 SINE Alu 5 29 -120 9 1571 716 190 28 7 chr4 129289257 129289400 -26340720 + B1_Mus1 SINE Alu 3 148 0 9 1571 514 189 17 43 chr4 129289400 129289503 -26340617 + B1_Mur1 SINE Alu 29 129 -20 9 1571 1069 128 61 0 chr4 129289816 129289996 -26340124 - B2_Mm1t SINE B2 -1 192 2 9 1571 389 230 116 66 chr4 129290491 129290612 -26339508 + RSINE1 SINE B4 36 162 -3 9 1571 286 145 96 55 chr4 129290624 129290697 -26339423 + B3 SINE B2 1 76 -140 9 1571 529 171 114 0 chr4 129290683 129290788 -26339332 + B1_Mur1 SINE Alu 25 141 -8 9 1571 707 216 0 7 chr4 129290812 129290947 -26339173 - B1_Mus1 SINE Alu -14 134 1 9 1571 486 305 128 80 chr4 129291976 129292219 -26337901 - RMER12 LTR ERVK -2 1570 1298 9 1571 270 116 0 0 chr4 129292219 129292262 -26337858 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1571 3515 140 29 212 chr4 129292262 129293340 -26336780 - RMER12 LTR ERVK -432 890 9 9 1571 510 133 31 16 chr4 129294436 129294566 -26335554 - ORR1A1 LTR MaLR -191 135 1 9 1571 281 244 31 108 chr4 129295309 129295438 -26334682 + MT2B2 LTR ERVL 137 255 -329 9 1571 427 232 0 21 chr4 129295347 129295444 -26334676 + PB1D10 SINE Alu 11 105 -12 9 1571 893 226 61 5 chr4 129295462 129295658 -26334462 + B3 SINE B2 4 210 -6 9 1571 1520 37 0 21 chr4 129296819 129297011 -26333109 + B2_Mm1t SINE B2 1 188 -5 9 1571 770 131 72 58 chr4 129297023 129297161 -26332959 + B1_Mur3 SINE Alu 1 140 -9 1 1571 534 262 0 31 chr4 129297363 129297493 -26332627 - B1_Mur3 SINE Alu -20 129 4 1 1571 356 326 28 49 chr4 129297493 129297520 -26332600 - B4 SINE B4 -204 88 65 1 1571 209 189 0 0 chr4 129297997 129298034 -26332086 + CT-rich Low_complexity Low_complexity 2 38 0 1 1571 662 191 49 7 chr4 129299063 129299205 -26330915 - B1_Mur1 SINE Alu 0 149 2 1 1571 572 221 30 8 chr4 129299232 129299364 -26330756 - ID_B1 SINE B4 0 224 90 1 1571 242 219 141 0 chr4 129302916 129302980 -26327140 - B1_Mur1 SINE Alu -7 142 70 1 1571 321 243 171 19 chr4 129303027 129303132 -26326988 - B1F1 SINE Alu -10 139 19 1 1571 212 218 17 52 chr4 129304621 129304679 -26325441 - B1F1 SINE Alu -93 56 1 1 1571 371 308 49 43 chr4 129307121 129307284 -26322836 + ID_B1 SINE B4 61 224 0 1 1571 612 203 8 15 chr4 129307155 129307285 -26322835 + B1_Mur2 SINE Alu 21 149 0 1 1571 22 0 0 0 chr4 129307285 129307307 -26322813 + AT_rich Low_complexity Low_complexity 1 22 0 1 1571 282 56 0 0 chr4 129307827 129307863 -26322257 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1571 716 182 146 26 chr4 129307873 129308065 -26322055 + B3 SINE B2 2 216 0 1 1571 256 263 82 95 chr4 129308079 129308226 -26321894 + B1_Mm SINE Alu 1 145 -2 1 1571 783 178 13 33 chr4 129308233 129308384 -26321736 + B1_Mur3 SINE Alu 2 149 0 1 1571 1226 27 0 0 chr4 129310128 129310275 -26319845 + B1_Mus2 SINE Alu 1 147 0 1 1571 221 100 50 0 chr4 129310275 129310315 -26319805 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 1571 392 55 0 16 chr4 129310403 129310471 -26319649 - B1_Mus2 SINE Alu 0 147 86 1 1571 456 264 33 0 chr4 129310478 129310599 -26319521 - B3 SINE B2 -84 132 8 1 1571 351 253 59 103 chr4 129310677 129310689 -26319431 - B2_Mm2 SINE B2 0 195 186 1 1571 1195 34 0 7 chr4 129310689 129310837 -26319283 - B1_Mus2 SINE Alu 0 147 1 1 1571 389 253 59 103 chr4 129310837 129311027 -26319093 - B3A SINE B2 -3 195 2 1 1571 230 255 0 0 chr4 129311529 129311576 -26318544 - B1F SINE Alu -21 128 82 1 1571 461 192 28 46 chr4 129312217 129312326 -26317794 - PB1D9 SINE Alu -13 107 1 1 1571 761 35 257 0 chr4 129312349 129312462 -26317658 - B1_Mus1 SINE Alu -4 144 3 1 1571 1205 47 0 0 chr4 129312801 129312949 -26317171 + B1_Mus1 SINE Alu 1 148 0 1 1571 582 195 40 8 chr4 129313334 129313458 -26316662 - B1_Mus1 SINE Alu -20 128 1 1 1571 1014 227 0 0 chr4 129313468 129313684 -26316436 - B3 SINE B2 0 216 1 1 1571 297 0 0 0 chr4 129313774 129313807 -26316313 + (TGG)n Simple_repeat Simple_repeat 1 33 0 1 1571 238 231 96 0 chr4 129313814 129313866 -26316254 - PB1D10 SINE Alu -7 110 54 1 1571 1076 88 0 0 chr4 129314816 129314964 -26315156 + B1_Mus1 SINE Alu 1 148 0 1 1571 1550 21 0 40 chr4 129314967 129315167 -26314953 + B2_Mm1t SINE B2 1 192 -1 1 1571 1156 72 76 23 chr4 129315184 129315356 -26314764 - B2_Mm2 SINE B2 -14 181 1 1 1571 383 226 42 21 chr4 129315502 129315597 -26314523 - PB1D10 SINE Alu -12 105 9 1 1571 522 248 26 0 chr4 129315676 129315793 -26314327 - PB1D9 SINE Alu 0 120 1 1 1571 290 355 25 8 chr4 129316107 129316229 -26313891 - MIR3 SINE MIR -51 157 34 1 1571 470 257 35 28 chr4 129316921 129317065 -26313055 - B1_Mm SINE Alu -1 146 2 1 1571 580 254 7 14 chr4 129318846 129318986 -26311134 - B1_Mur1 SINE Alu -1 148 10 1 1571 345 217 36 0 chr4 129319096 129319179 -26310941 - B1_Mus2 SINE Alu -12 135 50 1 1571 359 169 24 24 chr4 129319492 129319577 -26310543 - B1F2 SINE Alu -1 148 64 1 1571 850 161 81 0 chr4 129319998 129320159 -26309961 - URR1B DNA MER1_type 0 225 52 1 1571 541 179 78 1 chr4 129320434 129320562 -26309558 - B1_Mur2 SINE Alu -9 141 2 1 1571 301 319 0 168 chr4 129320596 129320739 -26309381 - ID_B1 SINE B4 -18 206 88 1 1571 293 258 0 15 chr4 129321102 129321169 -26308951 - ID SINE ID -143 81 16 1 1571 351 185 21 11 chr4 129323649 129323742 -26306378 + GA-rich Low_complexity Low_complexity 3 96 0 1 1571 322 253 340 96 chr4 129325518 129325727 -26304393 + B4 SINE B4 25 284 -8 1 1571 797 236 0 18 chr4 129326162 129326326 -26303794 + RSINE1 SINE B4 3 163 -2 1 1571 234 301 27 0 chr4 129327073 129327146 -26302974 - B1F1 SINE Alu -9 140 66 1 1571 1169 48 0 0 chr4 129327485 129327631 -26302489 + B1_Mus2 SINE Alu 2 147 0 1 1571 473 254 153 16 chr4 129328111 129328235 -26301885 + ID_B1 SINE B4 83 223 -1 1 1571 1411 49 38 0 chr4 129328267 129328452 -26301668 + B2_Mm1a SINE B2 2 193 0 1 1571 1133 75 0 0 chr4 129328453 129328600 -26301520 + B1_Mus2 SINE Alu 1 147 0 1 1571 229 183 111 48 chr4 129328696 129328759 -26301361 - ID4_ SINE ID -4 79 13 1 1571 377 287 63 13 chr4 129328958 129329117 -26301003 + L1M2 LINE L1 5094 5260 -883 1 1571 894 198 16 26 chr4 129329117 129329251 -26300869 + B2_Mm2 SINE B2 2 135 -60 1 1571 297 0 0 0 chr4 129329251 129329284 -26300836 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1571 894 198 16 26 chr4 129329284 129329341 -26300779 + B2_Mm2 SINE B2 136 191 -4 1 1571 828 268 130 28 chr4 129329366 129329865 -26300255 + L1MB4 LINE L1 5375 5924 -256 1 1571 239 282 47 12 chr4 129330078 129330164 -26299956 - PB1 SINE Alu -7 120 32 1 1571 400 226 39 10 chr4 129330207 129330310 -26299810 - PB1D10 SINE Alu 0 117 12 1 1571 231 214 36 0 chr4 129330261 129330317 -26299803 - B4A SINE B4 -146 146 89 1 1571 336 210 109 10 chr4 129330915 129331016 -26299104 - PB1D10 SINE Alu -1 116 6 1 1571 238 200 0 22 chr4 129331749 129331795 -26298325 - B1_Mur1 SINE Alu -32 117 73 1 1571 754 154 0 29 chr4 129331900 129332040 -26298080 - B1_Mus2 SINE Alu -2 145 10 1 1571 433 281 66 78 chr4 129333145 129333311 -26296809 - RSINE1 SINE B4 0 165 2 1 1571 246 325 157 0 chr4 129333341 129333424 -26296696 - B1_Mm SINE Alu -50 97 2 1 1571 525 100 0 0 chr4 129333857 129333947 -26296173 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1571 1034 128 7 0 chr4 129334010 129334158 -26295962 + B1_Mur4 SINE Alu 2 150 0 1 1571 555 65 0 0 chr4 129334327 129334404 -26295716 + L1_Mus2 LINE L1 6490 6566 0 1 1571 1025 80 7 0 chr4 129334414 129334552 -26295568 + B1_Mus2 SINE Alu 9 147 0 1 1571 1297 84 5 35 chr4 129335340 129335538 -26294582 + B2_Mm1a SINE B2 2 193 0 1 1571 765 212 83 6 chr4 129335549 129335729 -26294391 + B2_Mm2 SINE B2 1 194 -1 1 1571 228 35 0 0 chr4 129335736 129335765 -26294355 + (CAGAA)n Simple_repeat Simple_repeat 2 30 0 1 1571 449 182 97 39 chr4 129335776 129335879 -26294241 + B1_Mur4 SINE Alu 1 109 -41 1 1571 790 188 28 7 chr4 129336009 129336154 -26293966 - B1_Mus1 SINE Alu 0 148 1 1 1571 385 250 11 33 chr4 129336249 129336340 -26293780 + B3 SINE B2 105 193 -23 1 1571 274 175 0 34 chr4 129336352 129336411 -26293709 - B1_Mur2 SINE Alu -1 148 92 1 1571 830 166 43 0 chr4 129336777 129336916 -26293204 - B1_Mur4 SINE Alu -2 148 4 1 1571 23 0 0 0 chr4 129336937 129336960 -26293160 + AT_rich Low_complexity Low_complexity 1 23 0 1 1571 373 309 70 64 chr4 129336960 129337147 -26292973 - B3A SINE B2 -10 188 1 1 1571 183 80 0 0 chr4 129337363 129337388 -26292732 + (CACGC)n Simple_repeat Simple_repeat 1 25 0 1 1571 1336 35 117 0 chr4 129337511 129337664 -26292456 + B2_Mm1a SINE B2 2 160 -33 1 1571 423 0 0 0 chr4 129337664 129337711 -26292409 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1571 1336 35 117 0 chr4 129337711 129337728 -26292392 + B2_Mm1a SINE B2 161 190 -3 1 1571 630 256 200 0 chr4 129337792 129338022 -26292098 + B4A SINE B4 5 280 -12 1 1571 928 160 186 0 chr4 129338115 129338303 -26291817 + URR1B DNA MER1_type 1 223 -2 1 1571 1043 93 123 0 chr4 129338356 129338518 -26291602 + B2_Mm1t SINE B2 2 183 -10 1 1571 757 219 138 5 chr4 129338918 129339106 -26291014 + B3 SINE B2 4 216 0 1 1571 623 228 83 58 chr4 129339117 129339322 -26290798 + B3 SINE B2 4 213 -3 1 1571 547 259 99 0 chr4 129339348 129339479 -26290641 + RSINE1 SINE B4 11 154 -11 1 1571 552 15 0 0 chr4 129339482 129339547 -26290573 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1571 322 174 126 11 chr4 129340190 129340277 -26289843 - PB1D9 SINE Alu -23 97 1 1 1571 882 217 43 19 chr4 129340384 129340591 -26289529 + B3 SINE B2 1 212 -4 1 1571 347 281 10 30 chr4 129340644 129340743 -26289377 + PB1D9 SINE Alu 2 98 -22 1 1571 290 231 68 114 chr4 129340653 129340785 -26289335 + MT2B LTR ERVL 170 295 -306 1 1571 297 194 32 0 chr4 129340808 129340870 -26289250 - B1_Mur4 SINE Alu -86 64 1 1 1571 262 253 26 13 chr4 129340870 129340884 -26289236 - B4 SINE B4 -144 148 72 1 1571 1143 62 0 20 chr4 129341250 129341398 -26288722 - B1_Mm SINE Alu -2 145 1 1 1571 467 216 52 111 chr4 129341865 129342037 -26288083 - URR1B DNA MER1_type -3 222 61 1 1571 1536 43 27 0 chr4 129342172 129342360 -26287760 + B2_Mm2 SINE B2 1 193 -2 1 1571 34 0 0 0 chr4 129342594 129342628 -26287492 + AT_rich Low_complexity Low_complexity 1 34 0 1 1571 800 272 18 24 chr4 129342750 129342916 -26287204 + B3 SINE B2 1 165 -51 1 1571 422 192 211 0 chr4 129342915 129343019 -26287101 - B1_Mus1 SINE Alu -5 143 18 1 1571 25 0 0 0 chr4 129343027 129343052 -26287068 + AT_rich Low_complexity Low_complexity 1 25 0 1 1571 691 270 41 0 chr4 129343109 129343305 -26286815 - ID_B1 SINE B4 -19 205 2 1 1571 1050 103 14 0 chr4 129343677 129343822 -26286298 - B1_Mus2 SINE Alu 0 147 1 1 1571 1353 59 21 31 chr4 129343833 129344025 -26286095 - B2_Mm1t SINE B2 -2 191 2 1 1571 1190 49 21 0 chr4 129344212 129344356 -26285764 + B1_Mus2 SINE Alu 1 147 0 1 1571 286 58 19 37 chr4 129344366 129344420 -26285700 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1571 578 261 45 50 chr4 129344591 129344789 -26285331 + B3A SINE B2 1 197 -1 1 1571 776 190 152 27 chr4 129344802 129344986 -26285134 - B3 SINE B2 -5 211 5 1 1571 198 91 0 0 chr4 129345001 129345034 -26285086 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1571 1412 49 21 42 chr4 129345035 129345227 -26284893 + B2_Mm2 SINE B2 1 188 -7 1 1571 1537 45 0 0 chr4 129345232 129345409 -26284711 + B2_Mm1a SINE B2 1 177 -16 1 1571 207 0 0 0 chr4 129345410 129345433 -26284687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1571 507 274 102 12 chr4 129345451 129345611 -26284509 - B3A SINE B2 -10 188 12 1 1571 1376 69 25 46 chr4 129345611 129345632 -26284488 - B2_Mm1t SINE B2 0 193 177 1 1571 180 0 0 0 chr4 129345632 129345652 -26284468 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1571 1376 69 25 46 chr4 129345652 129345827 -26284293 - B2_Mm1t SINE B2 -17 176 1 1 1571 1190 121 10 21 chr4 129345832 129346026 -26284094 - B2_Mm1a SINE B2 -1 192 1 1 1571 363 252 96 10 chr4 129346045 129346149 -26283971 + PB1D10 SINE Alu 1 113 -4 1 1571 309 109 0 0 chr4 129346161 129346207 -26283913 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 1 1571 546 236 194 11 chr4 129346237 129346417 -26283703 + B3 SINE B2 4 216 0 1 1571 756 269 55 0 chr4 129346427 129346609 -26283511 + B3 SINE B2 4 195 -21 1 1571 815 132 7 49 chr4 129346625 129346768 -26283352 - B1_Mus2 SINE Alu 0 147 11 1 1571 483 288 73 68 chr4 129346630 129346850 -26283270 - ID_B1 SINE B4 -2 222 2 1 1571 355 202 0 37 chr4 129346850 129346925 -26283195 + RLTR25A LTR ERVK 502 573 -530 1 1571 809 49 0 0 chr4 129346866 129346968 -26283152 + B1_Mus2 SINE Alu 41 142 -5 1 1571 1457 74 16 0 chr4 129347184 129347373 -26282747 + B2_Mm2 SINE B2 2 193 -2 1 1571 1225 35 14 0 chr4 129347599 129347743 -26282377 + B1_Mus1 SINE Alu 3 148 0 1 1571 1096 50 0 0 chr4 129348094 129348233 -26281887 - B1_Mus1 SINE Alu 0 148 10 1 1571 582 276 46 0 chr4 129348947 129349099 -26281021 + MIR SINE MIR 74 232 -30 1 1571 423 103 71 29 chr4 129350205 129350275 -26279845 - B1_Mus1 SINE Alu -75 73 1 1 1571 650 195 48 8 chr4 129350546 129350670 -26279450 - B1_Mur1 SINE Alu 0 149 21 1 1571 362 298 113 38 chr4 129350670 129350731 -26279389 - ID_B1 SINE B4 0 224 26 1 1571 358 248 76 38 chr4 129350681 129350786 -26279334 - PB1D10 SINE Alu -2 115 7 1 1571 222 171 0 0 chr4 129350922 129350963 -26279157 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1571 1169 110 55 0 chr4 129351280 129351462 -26278658 + B2_Mm1t SINE B2 1 192 -1 1 1571 874 21 0 2 chr4 129351507 129351623 -26278497 + B1_Mus1 SINE Alu 34 148 0 1 1571 209 222 0 0 chr4 129351648 129351693 -26278427 + A-rich Low_complexity Low_complexity 1 45 0 1 1571 1625 47 0 0 chr4 129351835 129352026 -26278094 + B2_Mm1t SINE B2 1 191 -2 1 1571 427 62 0 122 chr4 129352028 129352102 -26278018 + B2_Mm1t SINE B2 105 169 -24 1 1571 317 237 97 0 chr4 129352100 129352193 -26277927 + BC1_Mm scRNA scRNA 43 144 -8 1 1571 1000 205 41 5 chr4 129352456 129352652 -26277468 + B3 SINE B2 14 216 0 1 1571 602 269 0 15 chr4 129352682 129352814 -26277306 - RSINE1 SINE B4 -31 134 5 1 1571 1219 61 0 0 chr4 129352968 129353115 -26277005 - B1_Mus1 SINE Alu 0 148 2 1 1571 1221 88 33 11 chr4 129353120 129353304 -26276816 - B2_Mm2 SINE B2 -7 188 1 1 1571 234 330 34 0 chr4 129353506 129353594 -26276526 - LTR41B LTR ERVL -490 268 178 1 1571 526 202 0 35 chr4 129354318 129354455 -26275665 - B1_Mur3 SINE Alu -22 127 3 1 1571 378 326 16 73 chr4 129354455 129354551 -26275569 - MT2B LTR ERVL -445 156 72 1 1571 843 171 20 0 chr4 129354805 129354951 -26275169 + B1_Mur4 SINE Alu 2 150 0 1 1571 328 173 76 51 chr4 129354954 129355033 -26275087 + L1M4b LINE L1 2221 2301 -5033 1 1571 240 100 0 0 chr4 129355486 129355526 -26274594 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 1 1571 255 188 282 19 chr4 129356034 129356137 -26273983 + MIRm SINE MIR 38 167 -109 1 1571 353 252 159 51 chr4 129356677 129356782 -26273338 + B4A SINE B4 94 199 -93 1 1571 448 31 15 30 chr4 129356782 129356849 -26273271 + (TAA)n Simple_repeat Simple_repeat 2 67 0 1 1571 353 252 159 51 chr4 129356849 129356881 -26273239 + B4A SINE B4 200 246 -46 1 1571 468 259 26 0 chr4 129357044 129357204 -26272916 + L1ME2 LINE L1 5835 6000 -444 1 1571 714 175 67 0 chr4 129357672 129357792 -26272328 + B3 SINE B2 3 130 -86 1 1571 407 273 49 21 chr4 129358004 129358146 -26271974 + RMER17C-int LTR ERVK 3024 3169 -69 1 1571 1258 27 0 7 chr4 129358149 129358296 -26271824 + B1_Mus1 SINE Alu 2 147 -1 1 1571 997 215 76 62 chr4 129358410 129358780 -26271340 + MYSERV6-int LTR ERVK 8604 8904 -55 1 1571 186 153 29 157 chr4 129358942 129359012 -26271108 - L4 LINE RTE -614 1415 1355 1 1571 958 141 50 1 chr4 129359118 129359311 -26270809 + B2_Mm2 SINE B2 1 205 -11 1 1571 631 228 81 0 chr4 129359509 129359645 -26270475 + B1_Mus2 SINE Alu 1 147 0 1 1571 892 164 140 16 chr4 129359760 129359946 -26270174 + B3 SINE B2 2 210 -6 1 1571 755 131 138 0 chr4 129360391 129360521 -26269599 - B1_Mus1 SINE Alu 0 148 1 1 1571 216 0 0 0 chr4 129361264 129361288 -26268832 + (CAGT)n Simple_repeat Simple_repeat 1 24 0 1 1571 285 264 36 60 chr4 129361958 129362089 -26268031 + MIRc SINE MIR 21 153 -115 1 1571 321 135 0 0 chr4 129362178 129362230 -26267890 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1 1571 993 114 76 49 chr4 129362252 129362436 -26267684 + B2_Mm2 SINE B2 2 190 -5 1 1571 948 222 44 15 chr4 129362447 129362653 -26267467 + B3 SINE B2 1 212 -4 1 1571 1205 163 45 0 chr4 129362657 129362859 -26267261 - B3 SINE B2 -5 211 1 1 1571 582 275 18 30 chr4 129362886 129363051 -26267069 + RSINE1 SINE B4 2 164 -1 1 1571 717 218 129 6 chr4 129363191 129363218 -26266902 - B3 SINE B2 -24 192 166 1 1571 330 26 0 0 chr4 129363218 129363257 -26266863 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1571 717 218 129 6 chr4 129363257 129363400 -26266720 - B3 SINE B2 -51 165 1 1 1571 833 232 146 23 chr4 129363582 129363842 -26266278 + B4A SINE B4 1 292 0 1 1571 252 200 0 0 chr4 129363844 129363919 -26266201 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1571 306 327 59 53 chr4 129364609 129364825 -26265295 - MIRb SINE MIR -6 256 32 1 1571 828 168 7 0 chr4 129364899 129365042 -26265078 + B1_Mus2 SINE Alu 4 147 0 1 1571 460 294 0 0 chr4 129365054 129365163 -26264957 + PB1D10 SINE Alu 5 113 -4 1 1571 250 204 61 0 chr4 129365252 129365301 -26264819 - MIRm SINE MIR -9 267 216 1 1571 236 214 274 0 chr4 129365301 129365341 -26264779 - L2a LINE L2 -11 3415 3248 1 1571 228 264 137 42 chr4 129365464 129365559 -26264561 - ID_B1 SINE B4 -7 217 114 1 1571 533 297 83 15 chr4 129365584 129365789 -26264331 + MER2 DNA MER2_type 81 299 -46 1 1571 354 286 0 0 chr4 129365847 129365924 -26264196 + RSINE1 SINE B4 5 81 -84 1 1571 1072 72 36 0 chr4 129365988 129366127 -26263993 + B1_Mus1 SINE Alu 5 148 0 1 1571 344 200 12 0 chr4 129366129 129366209 -26263911 + GA-rich Low_complexity Low_complexity 2 82 0 1 1571 684 140 158 0 chr4 129366415 129366529 -26263591 + B1_Mus1 SINE Alu 2 133 -15 1 1571 336 225 135 0 chr4 129366570 129366659 -26263461 - B3 SINE B2 -11 205 105 1 1571 416 219 183 8 chr4 129366687 129366807 -26263313 - B3A SINE B2 -56 142 2 1 1571 404 238 165 59 chr4 129366811 129366981 -26263139 - ID_B1 SINE B4 -12 212 25 1 1571 251 316 0 0 chr4 129367069 129367148 -26262972 - ID4_ SINE ID -3 80 2 1 1571 186 71 0 0 chr4 129367189 129367217 -26262903 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1 1571 674 83 269 0 chr4 129367227 129367335 -26262785 - B1_Mus1 SINE Alu -10 138 2 1 1571 344 215 51 0 chr4 129367337 129367416 -26262704 - B1F SINE Alu 0 149 67 1 1571 1435 54 26 36 chr4 129367417 129367609 -26262511 - B2_Mm2 SINE B2 -5 190 1 1 1571 989 128 7 20 chr4 129367711 129367863 -26262257 - B1_Mur4 SINE Alu 0 150 1 1 1571 1351 91 0 6 chr4 129367869 129368046 -26262074 - B2_Mm2 SINE B2 -19 176 1 1 1572 1206 68 0 0 chr4 129368461 129368607 -26261513 + B1_Mus1 SINE Alu 3 148 0 1 1572 1113 72 0 0 chr4 129368635 129368774 -26261346 + B1_Mus2 SINE Alu 1 139 -8 1 1572 243 88 0 0 chr4 129370252 129370286 -26259834 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1572 1179 55 0 7 chr4 129370643 129370791 -26259329 + B1_Mus2 SINE Alu 1 147 0 1 1572 231 183 0 48 chr4 129371312 129371375 -26258745 - B4A SINE B4 -43 249 190 1 1572 441 198 11 8 chr4 129371337 129371455 -26258665 - B1_Mur2 SINE Alu -1 148 33 1 1572 948 269 10 0 chr4 129371603 129371811 -26258309 - B4 SINE B4 -79 213 4 1 1572 1189 109 14 77 chr4 129371813 129371864 -26258256 - B2_Mm2 SINE B2 0 195 154 1 1572 1750 21 0 0 chr4 129371864 129372057 -26258063 + B2_Mm1t SINE B2 1 193 0 1 1572 1189 109 14 77 chr4 129372057 129372213 -26257907 - B2_Mm2 SINE B2 -42 153 1 1 1572 969 137 0 0 chr4 129372233 129372379 -26257741 - B1_Mus1 SINE Alu 0 148 3 1 1572 272 259 100 106 chr4 129372379 129372539 -26257581 - B4A SINE B4 -52 240 82 1 1572 306 0 0 0 chr4 129372567 129372601 -26257519 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1572 1096 60 0 0 chr4 129372602 129372735 -26257385 - B1_Mus2 SINE Alu -13 134 2 1 1572 380 193 33 88 chr4 129372755 129372846 -26257274 - B1F1 SINE Alu -54 95 10 1 1572 180 77 0 0 chr4 129373844 129373870 -26256250 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 1 1572 369 263 104 9 chr4 129374675 129374790 -26255330 - RSINE1 SINE B4 -37 128 3 1 1572 516 269 102 6 chr4 129374795 129374952 -26255168 - ID_B1 SINE B4 -1 223 52 1 1572 188 297 35 122 chr4 129374962 129375077 -26255043 + MIRb SINE MIR 164 268 0 1 1572 324 294 0 0 chr4 129375133 129375201 -26254919 - ID4 SINE ID -15 68 1 1 1572 289 151 0 36 chr4 129375253 129375320 -26254800 - B2_Mm2 SINE B2 -107 109 47 1 1572 1234 88 41 0 chr4 129375352 129375523 -26254597 - B2_Mm1t SINE B2 -14 179 2 1 1572 788 160 27 34 chr4 129375528 129375677 -26254443 - B1_Mur4 SINE Alu -2 148 1 1 1572 199 293 146 73 chr4 129375761 129375967 -26254153 - L2a LINE L2 -104 3322 3102 1 1572 534 185 436 50 chr4 129376052 129376271 -26253849 + MTD LTR MaLR 71 376 -43 1 1572 1049 66 65 7 chr4 129376271 129376409 -26253711 - B1_Mus2 SINE Alu -1 146 1 1 1572 505 184 148 93 chr4 129376409 129376451 -26253669 + MTD LTR MaLR 377 419 0 1 1572 528 291 38 38 chr4 129376524 129376681 -26253439 + B3 SINE B2 4 160 -56 1 1572 335 198 165 10 chr4 129377684 129377781 -26252339 - PB1D9 SINE Alu -7 113 2 1 1572 1363 90 16 11 chr4 129377824 129378014 -26252106 - B2_Mm2 SINE B2 0 195 5 1 1572 990 69 15 15 chr4 129378092 129378225 -26251895 - B1_Mm SINE Alu -13 134 2 1 1572 691 277 155 45 chr4 129378286 129378622 -26251498 + MTE2a LTR MaLR 7 379 0 1 1572 369 226 26 86 chr4 129379155 129379271 -26250849 + PB1D9 SINE Alu 12 120 0 1 1572 651 191 92 0 chr4 129380810 129380941 -26249179 - B1_Mus2 SINE Alu -1 146 4 1 1572 252 86 0 0 chr4 129380964 129380999 -26249121 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1572 1858 183 96 37 chr4 129381598 129381971 -26248149 - RMER4A LTR ERVK -3 463 63 1 1572 1147 121 50 0 chr4 129381971 129382153 -26247967 - B2_Mm2 SINE B2 -2 193 3 1 1572 1858 183 96 37 chr4 129382153 129382216 -26247904 - RMER4A LTR ERVK -404 62 1 1 1572 1131 102 0 0 chr4 129382244 129382391 -26247729 - B1_Mus2 SINE Alu 0 147 1 1 1572 533 231 271 6 chr4 129382411 129382581 -26247539 - B3 SINE B2 -1 215 1 1 1572 403 169 221 71 chr4 129382581 129382708 -26247412 - B1_Mur1 SINE Alu -3 146 1 1 1572 241 310 43 54 chr4 129382907 129382999 -26247121 - B3A SINE B2 -12 186 96 1 1572 697 239 32 49 chr4 129383195 129383380 -26246740 - B3A SINE B2 -15 183 2 1 1572 500 249 188 19 chr4 129383478 129383638 -26246482 - B4 SINE B4 -63 229 43 1 1572 234 309 58 111 chr4 129383679 129383708 -26246412 + B4A SINE B4 75 173 -119 1 1572 506 246 40 0 chr4 129383708 129383834 -26246286 + B1_Mur3 SINE Alu 17 147 -2 1 1572 346 307 181 49 chr4 129383840 129383984 -26246136 + RSINE1 SINE B4 3 165 0 1 1572 211 286 18 0 chr4 129384126 129384182 -26245938 + ID SINE ID 2 58 -166 1 1572 222 118 0 0 chr4 129384444 129384478 -26245642 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1572 219 318 36 36 chr4 129384640 129384751 -26245369 + L2c LINE L2 3251 3361 -26 1 1572 1039 103 14 0 chr4 129384894 129385039 -26245081 - B1_Mus2 SINE Alu 0 147 1 1 1572 473 307 156 6 chr4 129385040 129385207 -26244913 + ID_B1 SINE B4 24 215 -9 1 1572 228 155 77 108 chr4 129385158 129385223 -26244897 + B1F SINE Alu 87 149 0 1 1572 1101 82 7 0 chr4 129385573 129385719 -26244401 - B1_Mus1 SINE Alu 0 148 2 1 1572 739 275 9 37 chr4 129386034 129386249 -26243871 + B3 SINE B2 2 210 -6 1 1572 508 206 28 9 chr4 129386267 129386375 -26243745 + PB1D9 SINE Alu 1 110 -10 1 1572 431 254 106 15 chr4 129386400 129386532 -26243588 - B1F2 SINE Alu -5 144 1 1 1572 246 185 36 18 chr4 129386633 129386688 -26243432 + MurSatRep1 Unknown Unknown 229 284 -1853 1 1572 642 117 225 0 chr4 129387336 129387456 -26242664 + B1_Mus2 SINE Alu 1 147 0 1 1572 247 228 140 11 chr4 129387497 129387590 -26242530 - MurSatRep1 Unknown Unknown -1879 258 154 1 1572 671 147 26 8 chr4 129387686 129387803 -26242317 + PB1D9 SINE Alu 2 120 0 1 1572 217 260 40 0 chr4 129388017 129388067 -26242053 + B3 SINE B2 62 113 -103 1 1572 184 329 94 0 chr4 129388413 129388498 -26241622 + MIR SINE MIR 2 94 -168 1 1572 235 276 184 48 chr4 129388561 129388664 -26241456 + RSINE1 SINE B4 18 134 -31 1 1572 576 168 30 16 chr4 129388733 129388856 -26241264 - B1_Mus1 SINE Alu 0 148 25 1 1572 529 198 24 24 chr4 129389523 129389647 -26240473 - ID_B1 SINE B4 -13 211 88 1 1572 1121 95 0 0 chr4 129390151 129390299 -26239821 - B1_Mus1 SINE Alu 0 148 1 1 1572 1057 118 25 46 chr4 129394134 129394330 -26235790 - B2_Mm1t SINE B2 0 193 2 1 1572 883 50 0 0 chr4 129394447 129394566 -26235554 + B1_Mus2 SINE Alu 29 147 0 1 1572 1267 104 60 0 chr4 129394616 129394799 -26235321 + B2_Mm2 SINE B2 1 194 -1 1 1572 395 283 192 12 chr4 129395008 129395169 -26234951 + ID_B1 SINE B4 2 191 -33 1 1572 2875 82 23 3 chr4 129395247 129395639 -26234481 - MTB LTR MaLR 0 400 1 1 1572 1389 71 39 0 chr4 129395834 129396016 -26234104 + B2_Mm2 SINE B2 2 190 -5 1 1572 823 62 9 0 chr4 129397563 129397676 -26232444 - B1_Mus1 SINE Alu 0 148 35 1 1572 276 280 94 57 chr4 129398220 129398326 -26231794 - PB1D9 SINE Alu -10 110 1 1 1572 478 122 265 0 chr4 129398352 129398450 -26231670 - B1_Mus2 SINE Alu -11 136 13 1 1572 963 214 38 28 chr4 129398469 129398681 -26231439 - B3 SINE B2 -2 214 1 1 1572 743 274 67 9 chr4 129398767 129398977 -26231143 - ID_B1 SINE B4 -1 223 2 1 1572 241 355 0 61 chr4 129399114 129399126 -26230994 + ID SINE ID 70 74 -150 1 1572 403 224 140 12 chr4 129399126 129399240 -26230880 + B1_Mur2 SINE Alu 1 126 -23 1 1572 1374 86 37 0 chr4 129399283 129399470 -26230650 - B2_Mm2 SINE B2 0 195 2 1 1572 337 327 90 32 chr4 129399505 129399660 -26230460 + RSINE1 SINE B4 2 165 0 1 1572 198 0 0 0 chr4 129399660 129399682 -26230438 + (CCA)n Simple_repeat Simple_repeat 2 23 0 1 1572 538 250 7 48 chr4 129400119 129400266 -26229854 + B1_Mur2 SINE Alu 1 141 -8 1 1572 1069 74 0 0 chr4 129400466 129400601 -26229519 + B1_Mus1 SINE Alu 1 135 -13 1 1572 246 32 0 0 chr4 129400603 129400634 -26229486 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1572 292 357 53 23 chr4 129401114 129401246 -26228874 - RSINE1 SINE B4 -6 159 24 1 1572 1481 59 32 0 chr4 129401353 129401540 -26228580 + B2_Mm2 SINE B2 2 194 -1 1 1572 613 256 60 28 chr4 129401742 129401959 -26228161 + ID_B1 SINE B4 1 224 0 1 1572 576 240 0 0 chr4 129402145 129402270 -26227850 + B1_Mur1 SINE Alu 25 149 0 1 1572 1341 135 73 189 chr4 129403135 129403543 -26226577 + ORR1B1 LTR MaLR 1 394 0 1 1572 231 88 0 0 chr4 129403807 129403841 -26226279 + B1_Mus1 SINE Alu 2 35 -113 1 1572 228 274 43 106 chr4 129403811 129403905 -26226215 + B1_Mm SINE Alu 5 92 -55 1 1572 203 61 30 0 chr4 129404272 129404305 -26225815 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1 1572 688 227 171 17 chr4 129404305 129404480 -26225640 + B3 SINE B2 4 205 -11 1 1572 636 263 29 0 chr4 129404606 129404743 -26225377 + B1_Mur1 SINE Alu 5 145 -4 1 1572 23 0 0 0 chr4 129404956 129404979 -26225141 + AT_rich Low_complexity Low_complexity 1 23 0 1 1572 22 22 0 62 chr4 129405062 129405083 -26225037 + AT_rich Low_complexity Low_complexity 1 19 0 1 1572 1260 41 0 0 chr4 129405083 129405230 -26224890 + B1_Mus2 SINE Alu 1 147 0 1 1572 22 22 0 62 chr4 129405230 129405256 -26224864 + AT_rich Low_complexity Low_complexity 1 26 0 1 1572 222 333 46 0 chr4 129405256 129405343 -26224777 - MIRc SINE MIR -160 108 18 1 1572 779 107 119 22 chr4 129405389 129405523 -26224597 + B1_Mus1 SINE Alu 2 148 0 1 1572 248 260 29 86 chr4 129405771 129405789 -26224331 - B3A SINE B2 -98 100 40 1 1572 329 269 26 0 chr4 129405789 129405867 -26224253 - RSINE1 SINE B4 -74 91 12 1 1572 1178 44 0 0 chr4 129405959 129406096 -26224024 - B1_Mus2 SINE Alu -10 137 1 1 1572 186 71 0 0 chr4 129406100 129406128 -26223992 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1572 434 136 62 0 chr4 129406133 129406214 -26223906 - B1_Mus2 SINE Alu 0 147 62 1 1572 784 114 124 35 chr4 129406220 129406365 -26223755 + B2_Mm2 SINE B2 1 158 -37 1 1572 504 0 0 0 chr4 129406366 129406422 -26223698 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1 1572 945 57 0 0 chr4 129406438 129406562 -26223558 + B1_Mus2 SINE Alu 24 147 0 1 1572 259 242 145 0 chr4 129406585 129406647 -26223473 - B1_Mus1 SINE Alu -76 72 2 1 1572 952 225 14 36 chr4 129406681 129406902 -26223218 + B3 SINE B2 1 216 0 1 1572 790 256 42 37 chr4 129406962 129407177 -26222943 + B3 SINE B2 1 216 0 1 1572 477 191 191 0 chr4 129407834 129407944 -26222176 + B1_Mur3 SINE Alu 17 147 -2 1 1572 326 340 58 7 chr4 129408060 129408214 -26221906 + B3A SINE B2 1 162 -36 1 1572 216 0 0 0 chr4 129408225 129408249 -26221871 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1572 506 125 0 33 chr4 129408259 129408350 -26221770 + HY3 scRNA scRNA 1 88 -13 1 1572 29 0 0 0 chr4 129408544 129408573 -26221547 + AT_rich Low_complexity Low_complexity 1 29 0 1 1572 232 268 73 29 chr4 129408597 129408699 -26221421 + PB1D7 SINE Alu 14 119 -1 1 1572 628 226 129 41 chr4 129408852 129409046 -26221074 + B3 SINE B2 1 211 -5 1 1572 543 256 87 65 chr4 129409372 129409602 -26220518 + B4A SINE B4 2 236 -56 1 1572 786 175 111 20 chr4 129409922 129410120 -26220000 + B3 SINE B2 1 216 0 1 1572 1125 95 0 0 chr4 129410358 129410505 -26219615 + B1_Mus1 SINE Alu 2 148 0 1 1572 21 0 0 0 chr4 129410505 129410526 -26219594 + AT_rich Low_complexity Low_complexity 1 21 0 1 1572 396 206 141 20 chr4 129410557 129410656 -26219464 + PB1D10 SINE Alu 1 111 -6 1 1572 188 231 87 58 chr4 129411250 129411319 -26218801 + MIRb SINE MIR 27 97 -171 1 1572 273 243 157 0 chr4 129411337 129411422 -26218698 + PB1D10 SINE Alu 13 111 -9 1 1572 1223 54 0 0 chr4 129411621 129411768 -26218352 + B1_Mus2 SINE Alu 1 147 0 1 1572 241 271 23 23 chr4 129412284 129412371 -26217749 - Charlie4z DNA MER1_type -19 148 62 1 1572 784 151 29 0 chr4 129412400 129412539 -26217581 + B1_Mur4 SINE Alu 8 150 0 1 1572 1235 41 0 0 chr4 129412696 129412842 -26217278 + B1_Mus2 SINE Alu 2 147 0 1 1572 252 0 0 0 chr4 129412842 129412870 -26217250 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1572 257 244 106 35 chr4 129412874 129412959 -26217161 - B3 SINE B2 -123 93 3 1 1572 526 292 91 28 chr4 129412963 129413139 -26216981 - B3 SINE B2 -28 188 2 1 1572 234 308 0 13 chr4 129413247 129413326 -26216794 + PB1D10 SINE Alu 35 112 -5 1 1572 452 268 24 16 chr4 129413335 129413460 -26216660 + B1_Mur1 SINE Alu 5 130 -19 1 1572 367 310 35 54 chr4 129413501 129413690 -26216430 - ID_B1 SINE B4 -2 222 39 1 1572 1160 41 0 45 chr4 129414035 129414189 -26215931 + B1_Mus1 SINE Alu 2 148 0 1 1572 570 216 96 0 chr4 129414538 129414663 -26215457 + B1_Mur2 SINE Alu 1 137 -12 1 1572 1790 5 0 0 chr4 129414956 129415149 -26214971 - B2_Mm1a SINE B2 0 193 1 1 1572 380 204 45 20 chr4 129415355 129415466 -26214654 + PB1D9 SINE Alu 9 120 0 1 1572 768 173 203 16 chr4 129415475 129415657 -26214463 + B3 SINE B2 1 216 0 1 1572 1163 75 0 0 chr4 129415773 129415919 -26214201 + B1_Mus2 SINE Alu 2 147 0 1 1572 273 206 0 0 chr4 129415919 129416011 -26214109 + A-rich Low_complexity Low_complexity 1 92 0 1 1572 393 284 119 31 chr4 129416489 129416649 -26213471 + ID_B1 SINE B4 51 224 0 1 1572 797 74 190 0 chr4 129417015 129417136 -26212984 + B1_Mm SINE Alu 2 145 -2 1 1572 198 111 0 0 chr4 129417143 129417162 -26212958 + (A)n Simple_repeat Simple_repeat 1 19 0 1 1572 1155 22 58 0 chr4 129417162 129417301 -26212819 + B1_Mm SINE Alu 1 147 0 1 1572 198 111 0 0 chr4 129417301 129417317 -26212803 + (A)n Simple_repeat Simple_repeat 1 16 0 1 1572 513 189 44 18 chr4 129417338 129417451 -26212669 - B3 SINE B2 -95 121 6 1 1572 455 229 15 44 chr4 129417617 129417754 -26212366 - RLTR26 LTR ERVK -303 339 207 1 1572 1189 28 14 7 chr4 129417954 129418100 -26212020 + B1_Mm SINE Alu 1 147 0 1 1572 305 308 37 28 chr4 129420636 129420743 -26209377 + RMER10B LTR ERVL 276 383 -15 1 1572 262 256 110 0 chr4 129420759 129420841 -26209279 + RSINE1 SINE B4 52 142 -23 1 1572 260 275 96 37 chr4 129420864 129421000 -26209120 + B1F SINE Alu 5 148 -1 1 1572 298 316 30 10 chr4 129421254 129421353 -26208767 - PB1D7 SINE Alu -12 108 8 1 1572 1533 36 0 68 chr4 129421463 129421669 -26208451 + B2_Mm1a SINE B2 2 193 0 1 1572 531 259 60 13 chr4 129421688 129421837 -26208283 + RSINE1 SINE B4 10 165 0 1 1572 751 64 9 0 chr4 129421880 129421990 -26208130 + B1_Mus2 SINE Alu 27 137 -10 1 1572 377 181 94 21 chr4 129422086 129422182 -26207938 - B1_Mur1 SINE Alu -7 142 40 1 1572 724 141 0 48 chr4 129422212 129422398 -26207722 + CT-rich Low_complexity Low_complexity 3 179 0 1 1572 259 259 0 0 chr4 129422401 129422455 -26207665 - B1F2 SINE Alu -91 58 5 1 1572 1241 34 7 0 chr4 129422699 129422845 -26207275 + B1_Mus2 SINE Alu 1 147 0 1 1572 1189 115 35 0 chr4 129422873 129423047 -26207073 + B2_Mm1t SINE B2 1 180 -13 1 1572 272 304 0 0 chr4 129423229 129423308 -26206812 - ID_B1 SINE B4 -3 221 143 1 1572 468 163 0 11 chr4 129423309 129423402 -26206718 - B2_Mm2 SINE B2 -1 194 103 1 1572 607 286 10 55 chr4 129423496 129423696 -26206424 - B3 SINE B2 -13 203 13 1 1572 302 205 98 0 chr4 129423695 129423769 -26206351 - B1F SINE Alu -56 93 11 1 1572 240 290 40 0 chr4 129423721 129423810 -26206310 - B4A SINE B4 -149 143 50 1 1572 1116 190 324 0 chr4 129423868 129424152 -26205968 - ORR1C1 LTR MaLR 0 378 3 1 1572 243 0 0 0 chr4 129424186 129424213 -26205907 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1572 1124 88 0 0 chr4 129424386 129424533 -26205587 + B1_Mus1 SINE Alu 1 147 -1 1 1572 546 263 43 7 chr4 129424538 129424676 -26205444 + B1_Mur1 SINE Alu 1 143 -6 1 1572 678 289 5 26 chr4 129424676 129424868 -26205252 - B3A SINE B2 -8 190 3 1 1572 198 0 0 0 chr4 129424977 129424999 -26205121 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1572 1215 54 0 0 chr4 129424999 129425146 -26204974 - B1_Mus2 SINE Alu 0 147 1 1 1572 350 244 64 0 chr4 129425260 129425338 -26204782 + ID4_ SINE ID 1 83 0 1 1572 393 288 40 27 chr4 129425362 129425512 -26204608 - B3 SINE B2 0 216 65 1 1572 267 31 0 0 chr4 129425520 129425552 -26204568 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1572 180 0 0 0 chr4 129425551 129425571 -26204549 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1572 591 192 30 37 chr4 129425571 129425706 -26204414 - B2_Mm2 SINE B2 -21 174 41 1 1572 738 159 15 22 chr4 129425762 129425897 -26204223 - B1_Mus2 SINE Alu -2 145 12 1 1572 1148 68 7 0 chr4 129425930 129426076 -26204044 - B1_Mm SINE Alu 0 147 1 1 1572 225 0 0 0 chr4 129426776 129426801 -26203319 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1572 279 0 0 0 chr4 129426801 129426831 -26203289 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1572 447 19 0 0 chr4 129426831 129426882 -26203238 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1572 649 85 11 0 chr4 129426927 129427021 -26203099 + B2_Mm1t SINE B2 2 96 -97 1 1572 478 79 13 0 chr4 129427201 129427277 -26202843 + B2_Mm1t SINE B2 112 188 -5 1 1572 1193 36 0 0 chr4 129427284 129427422 -26202698 + B1_Mm SINE Alu 1 138 -9 1 1572 383 38 19 0 chr4 129427422 129427475 -26202645 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1572 268 291 159 26 chr4 129428236 129428349 -26201771 + B1F SINE Alu 1 128 -21 1 1572 904 185 50 71 chr4 129428530 129428654 -26201466 + RMER10B LTR ERVL 6 119 -279 1 1572 1499 63 16 0 chr4 129428654 129428844 -26201276 - B2_Mm2 SINE B2 -1 194 2 1 1572 904 185 50 71 chr4 129428844 129428999 -26201121 + RMER10B LTR ERVL 120 279 -119 1 1572 1164 90 66 27 chr4 129429354 129429537 -26200583 - B2_Mm1a SINE B2 -3 190 1 1 1572 689 174 60 8 chr4 129429792 129429925 -26200195 + B1_Mur1 SINE Alu 9 148 -1 1 1572 198 0 0 0 chr4 129429931 129429953 -26200167 + (TAAG)n Simple_repeat Simple_repeat 2 23 0 1 1572 316 284 99 24 chr4 129430000 129430143 -26199977 + B3A SINE B2 35 182 -34 1 1572 482 74 0 47 chr4 129430143 129430228 -26199892 - L1Md_F3 LINE L1 -1 6583 6503 1 1572 316 306 31 69 chr4 129430228 129430239 -26199881 + B3A SINE B2 179 189 -9 1 1572 1145 68 0 14 chr4 129430280 129430428 -26199692 + B1_Mm SINE Alu 1 146 -1 1 1572 976 209 150 0 chr4 129430712 129430966 -26199154 - MTD LTR MaLR -6 413 122 1 1572 1021 179 19 53 chr4 129430991 129431256 -26198864 - RMER10B LTR ERVL -87 311 56 1 1572 645 175 53 47 chr4 129431250 129431331 -26198789 - MTD LTR MaLR -270 151 78 1 1572 192 40 0 0 chr4 129431331 129431356 -26198764 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1572 645 175 53 47 chr4 129431356 129431424 -26198696 - MTD LTR MaLR -344 77 3 1 1572 1058 241 42 35 chr4 129431467 129431755 -26198365 - B4A SINE B4 0 292 3 1 1572 501 223 0 0 chr4 129431769 129431989 -26198131 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1572 576 254 14 7 chr4 129433091 129433234 -26196886 - B1_Mur2 SINE Alu -5 144 1 1 1572 236 235 43 29 chr4 129433236 129433306 -26196814 - B1F SINE Alu -1 148 78 1 1572 624 200 131 0 chr4 129433310 129433440 -26196680 + B3 SINE B2 45 191 -25 1 1572 1238 34 0 7 chr4 129433448 129433596 -26196524 + B1_Mus2 SINE Alu 1 147 0 1 1572 518 0 16 0 chr4 129433631 129433693 -26196427 + (GAGAA)n Simple_repeat Simple_repeat 4 66 0 1 1572 697 260 39 24 chr4 129433821 129433994 -26196126 + B3 SINE B2 5 184 -32 1 1572 1384 46 46 0 chr4 129433994 129434167 -26195953 + B2_Mm1t SINE B2 1 181 -12 1 1572 219 36 0 0 chr4 129434167 129434195 -26195925 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1572 697 260 39 24 chr4 129434195 129434225 -26195895 + B3 SINE B2 185 211 -5 1 1572 1194 115 11 21 chr4 129434250 129434436 -26195684 + B2_Mm1a SINE B2 3 186 -7 1 1572 752 83 0 0 chr4 129434441 129434550 -26195570 + B1_Mus1 SINE Alu 2 110 -38 1 1572 247 271 0 54 chr4 129434613 129434687 -26195433 + PB1D10 SINE Alu 1 70 -47 1 1572 1298 20 0 0 chr4 129434687 129434834 -26195286 + B1_Mm SINE Alu 1 147 0 1 1572 243 310 57 57 chr4 129434834 129434882 -26195238 + B1F1 SINE Alu 74 123 -26 1 1572 1285 120 0 5 chr4 129434940 129435132 -26194988 + B2_Mm2 SINE B2 2 192 -3 1 1572 266 0 29 0 chr4 129435154 129435188 -26194932 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1572 557 289 57 19 chr4 129435192 129435351 -26194769 + RSINE1 SINE B4 1 165 0 1 1572 588 311 19 121 chr4 129435379 129435433 -26194687 + B4 SINE B4 1 44 -248 1 1572 1099 82 7 0 chr4 129435433 129435579 -26194541 + B1_Mm SINE Alu 1 147 0 1 1572 791 302 8 44 chr4 129435579 129435789 -26194331 + B4A SINE B4 43 240 -52 1 1572 3072 29 24 8 chr4 129435789 129436167 -26193953 + L1Md_F3 LINE L1 6201 6584 0 1 1572 791 302 8 39 chr4 129436167 129436223 -26193897 + B4A SINE B4 241 289 -3 1 1572 315 49 0 0 chr4 129436280 129436321 -26193799 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1572 1557 143 97 41 chr4 129436353 129436695 -26193425 + RLTR20B1 LTR ERVK 1 361 -202 1 1572 396 0 0 0 chr4 129437250 129437294 -26192826 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1572 462 331 23 8 chr4 129437305 129437436 -26192684 - RSINE1 SINE B4 -29 136 4 1 1572 554 203 145 8 chr4 129438241 129438365 -26191755 - B1_Mur2 SINE Alu -8 141 1 1 1572 706 158 7 36 chr4 129439198 129439336 -26190784 + B1_Mus2 SINE Alu 13 146 -1 1 1572 245 83 42 0 chr4 129439337 129439385 -26190735 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1572 246 233 67 27 chr4 129439475 129439550 -26190570 + ID_B1 SINE B4 78 155 -69 1 1572 1210 54 0 0 chr4 129439552 129439699 -26190421 + B1_Mus1 SINE Alu 2 148 0 1 1572 282 56 0 0 chr4 129439703 129439739 -26190381 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1572 816 11 0 0 chr4 129439739 129439832 -26190288 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1 1572 698 252 45 0 chr4 129439838 129439993 -26190127 + B3 SINE B2 8 169 -47 1 1572 1543 43 16 0 chr4 129440036 129440222 -26189898 - B2_Mm2 SINE B2 -5 190 2 1 1572 213 39 0 0 chr4 129440265 129440291 -26189829 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1572 1232 54 0 0 chr4 129440291 129440438 -26189682 - B1_Mus1 SINE Alu 0 148 2 1 1572 849 92 0 0 chr4 129440446 129440566 -26189554 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 1 1572 1066 100 112 0 chr4 129440567 129440727 -26189393 - B2_Mm2 SINE B2 -16 179 2 1 1572 540 204 0 18 chr4 129440860 129440970 -26189150 + B1_Mus2 SINE Alu 2 109 -38 1 1572 817 172 0 22 chr4 129440976 129441113 -26189007 + B1_Mur4 SINE Alu 5 138 -12 1 1572 397 326 79 39 chr4 129441142 129441529 -26188591 + ERVL-E-int LTR ERVL 4643 5112 -373 1 1572 505 243 9 0 chr4 129441796 129441903 -26188217 - PB1D10 SINE Alu -8 109 2 1 1572 241 332 129 86 chr4 129442118 129442263 -26187857 + LTR33 LTR ERVL 39 215 -300 1 1572 294 29 0 0 chr4 129442263 129442298 -26187822 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1572 1179 63 0 0 chr4 129442301 129442444 -26187676 - B1_Mus1 SINE Alu -5 143 1 1 1572 462 36 0 0 chr4 129442452 129442508 -26187612 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1572 241 332 129 86 chr4 129442508 129442767 -26187353 + LTR33 LTR ERVL 224 473 -42 1 1572 605 50 0 0 chr4 129442864 129442944 -26187176 + B2_Mm2 SINE B2 3 82 -113 1 1572 1337 97 16 0 chr4 129442947 129443133 -26186987 - B2_Mm1t SINE B2 -4 189 1 1 1572 495 0 0 0 chr4 129443145 129443200 -26186920 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1572 915 87 0 0 chr4 129443204 129443331 -26186789 - B1_Mus1 SINE Alu 0 148 22 1 1572 343 189 10 126 chr4 129443239 129443342 -26186778 - MT2B LTR ERVL -337 264 174 1 1572 829 181 118 10 chr4 129443351 129443546 -26186574 - B3 SINE B2 0 216 1 1 1572 36 40 0 0 chr4 129443546 129443596 -26186524 + AT_rich Low_complexity Low_complexity 1 50 0 1 1572 390 296 8 50 chr4 129443608 129443729 -26186391 + PB1D7 SINE Alu 4 119 -1 1 1572 601 231 6 58 chr4 129443739 129443895 -26186225 + B1_Mur1 SINE Alu 1 148 -1 1 1572 1222 41 0 7 chr4 129443963 129444101 -26186019 + B1_Mus1 SINE Alu 2 139 -9 1 1572 191 61 0 29 chr4 129444101 129444135 -26185985 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1572 203 241 0 69 chr4 129444168 129444226 -26185894 - L2c LINE L2 -14 3373 3320 1 1572 212 59 78 0 chr4 129444338 129444389 -26185731 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1572 1220 41 0 7 chr4 129444389 129444536 -26185584 - B1_Mm SINE Alu 0 147 2 1 1572 1317 106 5 11 chr4 129444578 129444768 -26185352 + B2_Mm1a SINE B2 2 190 -3 1 1572 441 350 46 76 chr4 129445481 129445616 -26184504 - MIRb SINE MIR -10 258 122 1 1572 1184 61 14 0 chr4 129445616 129445764 -26184356 + B1_Mur4 SINE Alu 1 150 0 1 1572 441 350 46 76 chr4 129445764 129445866 -26184254 - MIRb SINE MIR -147 121 28 1 1572 1182 48 0 39 chr4 129446235 129446388 -26183732 + B1_Mus1 SINE Alu 2 148 0 1 1572 977 121 0 0 chr4 129446522 129446663 -26183457 + B1_Mur4 SINE Alu 10 150 0 1 1572 844 183 217 0 chr4 129446692 129446867 -26183253 - B3 SINE B2 -3 213 1 1 1572 204 125 0 0 chr4 129446941 129446973 -26183147 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1572 262 282 35 26 chr4 129447001 129447114 -26183006 + (CATA)n Simple_repeat Simple_repeat 1 114 0 1 1572 362 313 112 13 chr4 129447227 129447379 -26182741 + B3 SINE B2 35 201 -15 1 1572 746 168 26 77 chr4 129447419 129447574 -26182546 - B1_Mus1 SINE Alu 0 148 2 1 1572 195 42 0 0 chr4 129447589 129447613 -26182507 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1572 447 19 0 0 chr4 129448147 129448199 -26181921 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1572 234 146 18 35 chr4 129448200 129448257 -26181863 - RLTR25B LTR ERVK -532 496 441 1 1572 618 128 0 0 chr4 129448211 129448297 -26181823 - B1_Mur4 SINE Alu -64 86 1 1 1572 189 0 0 0 chr4 129448299 129448320 -26181800 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1572 763 190 42 7 chr4 129448321 129448464 -26181656 - B1_Mur3 SINE Alu -1 148 1 1 1572 340 283 20 98 chr4 129448464 129448502 -26181618 - MT2B LTR ERVL -452 149 124 1 1572 270 0 0 0 chr4 129449907 129449937 -26180183 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1572 651 296 0 28 chr4 129450063 129450240 -26179880 - B3 SINE B2 -13 203 32 1 1572 1251 56 0 0 chr4 129450244 129450404 -26179716 + (TTCTC)n Simple_repeat Simple_repeat 4 163 0 1 1572 1349 37 0 18 chr4 129450411 129450577 -26179543 - B2_Mm2 SINE B2 -31 164 2 1 1572 815 206 141 11 chr4 129450629 129450820 -26179300 + B3 SINE B2 1 216 0 1 1572 1684 21 0 0 chr4 129450825 129451012 -26179108 + B2_Mm1t SINE B2 2 188 -5 1 1572 608 279 0 15 chr4 129451049 129451180 -26178940 + B1_Mur1 SINE Alu 1 129 -20 1 1572 1436 85 16 0 chr4 129451199 129451388 -26178732 - B2_Mm2 SINE B2 -3 192 1 1 1572 266 308 0 37 chr4 129451388 129451469 -26178651 + B4A SINE B4 69 146 -146 1 1572 377 283 30 0 chr4 129451418 129451517 -26178603 + PB1D10 SINE Alu 11 112 -5 1 1572 453 169 0 0 chr4 129451517 129451600 -26178520 + CT-rich Low_complexity Low_complexity 2 84 0 1 1572 770 240 83 50 chr4 129451614 129451748 -26178372 - B4A SINE B4 -43 249 116 1 1572 615 39 0 0 chr4 129451748 129451826 -26178294 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1572 285 29 0 0 chr4 129451826 129451859 -26178261 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1572 770 240 83 50 chr4 129451859 129451964 -26178156 - B4A SINE B4 -177 115 2 1 1572 540 0 0 0 chr4 129452205 129452265 -26177855 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1 1572 742 243 51 19 chr4 129452436 129452625 -26177495 - LTR85b LTR Gypsy? -605 218 17 1 1572 290 307 0 0 chr4 129452849 129452924 -26177196 + PB1D7 SINE Alu 44 118 -2 1 1572 246 306 28 0 chr4 129452948 129453020 -26177100 - B4A SINE B4 -119 173 100 1 1572 230 230 51 63 chr4 129453074 129453153 -26176967 - ID4 SINE ID -3 80 3 1 1572 556 130 197 68 chr4 129453198 129453330 -26176790 + B1_Mur4 SINE Alu 1 149 -1 1 1572 918 221 5 32 chr4 129453344 129453552 -26176568 + B3A SINE B2 1 195 0 1 1572 322 283 11 0 chr4 129453899 129453991 -26176129 - RSINE1 SINE B4 0 165 73 1 1572 916 99 8 0 chr4 129454090 129454221 -26175899 - B2_Mm2 SINE B2 -63 132 1 1 1572 371 283 0 83 chr4 129454224 129454332 -26175788 - PB1D10 SINE Alu -12 105 7 1 1572 225 301 0 0 chr4 129454370 129454443 -26175677 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1572 461 186 263 9 chr4 129454479 129454593 -26175527 - B1_Mus2 SINE Alu 0 147 5 1 1572 435 333 52 31 chr4 129454679 129454871 -26175249 - B3A SINE B2 -1 197 2 1 1572 1176 96 0 0 chr4 129454877 129455034 -26175086 - B2_Mm2 SINE B2 -35 160 4 1 1572 216 0 0 0 chr4 129455066 129455090 -26175030 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1572 486 49 0 0 chr4 129455384 129455445 -26174675 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 1572 764 73 9 0 chr4 129455502 129455612 -26174508 + ORR1B1 LTR MaLR 1 111 -283 1 1572 440 308 122 21 chr4 129455788 129456067 -26174053 - LTR48 LTR ERV1 0 787 481 1 1572 3170 53 2 25 chr4 129456103 129456508 -26173612 - MTA_Mm LTR MaLR 0 396 1 1 1572 1054 119 86 53 chr4 129456843 129457002 -26173118 + B2_Mm2 SINE B2 2 175 -20 1 1572 1312 70 26 16 chr4 129457002 129457192 -26172928 - B2_Mm2 SINE B2 -3 192 1 1 1572 1054 119 86 53 chr4 129457192 129457219 -26172901 + B2_Mm2 SINE B2 176 194 -1 1 1572 761 142 61 95 chr4 129457238 129457386 -26172734 + B1_Mur4 SINE Alu 2 144 -6 1 1572 1392 80 0 0 chr4 129457506 129457682 -26172438 - B2_Mm2 SINE B2 -18 177 2 1 1572 1179 55 7 14 chr4 129457842 129457990 -26172130 + B1_Mus1 SINE Alu 2 148 0 1 1572 183 49 23 47 chr4 129457990 129458033 -26172087 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 1 1572 805 164 21 63 chr4 129458329 129458357 -26171763 - B2_Mm2 SINE B2 0 195 171 1 1572 1499 68 0 0 chr4 129458357 129458549 -26171571 + B2_Mm1t SINE B2 1 192 -1 1 1572 805 164 21 63 chr4 129458549 129458709 -26171411 - B2_Mm2 SINE B2 -25 170 15 1 1572 668 68 0 11 chr4 129458667 129458756 -26171364 + B2_Mm2 SINE B2 90 177 -18 1 1572 189 326 99 43 chr4 129458913 129459054 -26171066 + MIRc SINE MIR 1 153 -115 1 1572 198 167 0 0 chr4 129459403 129459439 -26170681 + GA-rich Low_complexity Low_complexity 2 37 0 1 1572 232 307 43 93 chr4 129459946 129459974 -26170146 + B4 SINE B4 68 124 -168 1 1572 270 211 117 13 chr4 129459974 129460051 -26170069 + B1F2 SINE Alu 11 95 -54 1 1572 232 307 43 93 chr4 129460051 129460086 -26170034 + B4 SINE B4 125 200 -92 1 1572 949 296 177 18 chr4 129460136 129460577 -26169543 + LTR33 LTR ERVL 5 515 0 1 1572 235 265 139 30 chr4 129460629 129460730 -26169390 + RLTR33 LTR ERVK 264 375 -303 1 1572 433 283 0 19 chr4 129460795 129460903 -26169217 + PB1D10 SINE Alu 10 115 -2 1 1572 735 142 119 0 chr4 129460914 129461048 -26169072 + B1_Mur4 SINE Alu 1 150 0 1 1572 249 208 125 100 chr4 129461065 129461145 -26168975 + ID2 SINE ID 2 83 0 1 1572 1037 180 105 5 chr4 129461232 129461422 -26168698 + B3 SINE B2 1 209 -7 1 1572 1400 75 11 0 chr4 129461431 129461617 -26168503 + B2_Mm1t SINE B2 2 189 -4 1 1572 1126 75 0 7 chr4 129461625 129461773 -26168347 + B1_Mus2 SINE Alu 1 147 0 1 1572 446 149 0 0 chr4 129461801 129461868 -26168252 - MTC LTR MaLR 0 421 355 1 1572 460 148 34 144 chr4 129461865 129461983 -26168137 + B1_Mur2 SINE Alu 43 147 -2 1 1572 989 208 61 5 chr4 129462008 129462206 -26167914 - B3 SINE B2 -6 210 2 1 1572 650 47 12 0 chr4 129462828 129462914 -26167206 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1 1572 1259 41 0 0 chr4 129462914 129463059 -26167061 - B1_Mm SINE Alu -2 145 1 1 1572 1411 69 21 16 chr4 129463418 129463610 -26166510 - B2_Mm2 SINE B2 -1 194 2 1 1572 329 325 150 8 chr4 129463733 129463860 -26166260 + RSINE1 SINE B4 3 147 -18 1 1572 285 29 0 0 chr4 129463911 129463945 -26166175 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1572 498 179 0 0 chr4 129463946 129464041 -26166079 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1572 417 268 31 0 chr4 129464048 129464145 -26165975 - PB1D9 SINE Alu -19 101 2 1 1572 1208 55 0 0 chr4 129464163 129464309 -26165811 - B1_Mus2 SINE Alu 0 147 2 1 1572 21 71 0 0 chr4 129464316 129464358 -26165762 + AT_rich Low_complexity Low_complexity 1 42 0 1 1572 774 182 0 15 chr4 129464358 129464492 -26165628 - B1_Mur2 SINE Alu -1 148 17 1 1572 440 284 7 66 chr4 129464367 129464518 -26165602 - ID_B1 SINE B4 -8 216 75 1 1572 960 155 0 0 chr4 129464544 129464686 -26165434 - B1_Mus2 SINE Alu -5 142 1 1 1572 968 57 0 0 chr4 129464717 129464839 -26165281 + B1_Mus1 SINE Alu 6 127 -21 1 1572 831 182 125 18 chr4 129464842 129465010 -26165110 - B3 SINE B2 -14 202 17 1 1572 186 43 0 0 chr4 129465030 129465053 -26165067 + (TATG)n Simple_repeat Simple_repeat 1 23 0 1 1572 958 253 0 0 chr4 129465053 129465216 -26164904 - B3 SINE B2 -51 165 3 1 1572 380 239 171 49 chr4 129465292 129465415 -26164705 - ID_B1 SINE B4 0 224 87 1 1572 1192 109 0 22 chr4 129466598 129466619 -26163501 - B2_Mm2 SINE B2 -18 177 159 1 1572 243 0 0 0 chr4 129466619 129466646 -26163474 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1572 1192 109 0 22 chr4 129466646 129466802 -26163318 - B2_Mm2 SINE B2 -37 158 4 1 1572 1234 162 218 14 chr4 129467104 129467398 -26162722 + ORR1D1 LTR MaLR 1 354 -20 1 1572 569 93 22 34 chr4 129467442 129467531 -26162589 + B3 SINE B2 12 99 -117 1 1572 213 250 0 0 chr4 129467814 129467854 -26162266 + ID2 SINE ID 36 75 -8 1 1572 306 280 97 0 chr4 129468041 129468134 -26161986 - L1MEg LINE L1 -4144 1940 1839 1 1572 1157 82 0 0 chr4 129468142 129468288 -26161832 - B1_Mus2 SINE Alu -1 146 1 1 1572 278 115 0 19 chr4 129468668 129468721 -26161399 + (CAA)n Simple_repeat Simple_repeat 1 52 0 1 1572 496 273 204 0 chr4 129468721 129468917 -26161203 + Charlie8 DNA MER1_type 43 273 -2155 1 1572 282 338 45 26 chr4 129468969 129469124 -26160996 - MLT1M LTR MaLR -497 175 18 1 1572 1626 26 0 49 chr4 129469370 129469573 -26160547 + B2_Mm1a SINE B2 1 193 0 1 1572 215 341 102 0 chr4 129469597 129469685 -26160435 + PB1D10 SINE Alu 19 115 -2 1 1572 803 243 16 124 chr4 129469697 129469946 -26160174 + ID_B1 SINE B4 2 223 -1 1 1572 577 191 9 19 chr4 129469951 129470058 -26160062 + PB1D9 SINE Alu 13 118 -2 1 1572 627 219 0 25 chr4 129470446 129470568 -26159552 + PB1D7 SINE Alu 2 120 0 1 1572 455 259 219 4 chr4 129470572 129470804 -26159316 + B4A SINE B4 3 284 -8 1 1572 461 101 187 22 chr4 129471065 129471156 -26158964 + B1F2 SINE Alu 31 136 -13 1 1572 261 0 0 0 chr4 129471162 129471191 -26158929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1572 221 200 15 15 chr4 129471596 129471617 -26158503 + A-rich Low_complexity Low_complexity 3 24 0 1 1572 1206 68 0 0 chr4 129471617 129471764 -26158356 + B1_Mus2 SINE Alu 1 147 0 1 1572 221 200 15 15 chr4 129471764 129471808 -26158312 + A-rich Low_complexity Low_complexity 25 67 0 1 1572 992 190 43 73 chr4 129471821 129472054 -26158066 + URR1A DNA MER1_type 1 226 0 1 1572 323 302 45 33 chr4 129473387 129473514 -26156606 - PB1D9 SINE Alu 0 120 1 1 1572 230 273 14 70 chr4 129473734 129473805 -26156315 + ID2 SINE ID 7 73 -10 1 1572 6706 87 25 7 chr4 129473815 129474727 -26155393 + L1_Mus4 LINE L1 5696 6621 -15 1 1572 1172 75 0 0 chr4 129474727 129474873 -26155247 + B1_Mus2 SINE Alu 2 147 0 1 1572 6706 79 26 5 chr4 129474873 129474891 -26155229 + L1_Mus4 LINE L1 6622 6636 0 1 1572 500 142 0 19 chr4 129474899 129475007 -26155113 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 1 1572 198 323 30 15 chr4 129476048 129476114 -26154006 - L3 LINE CR1 -3 4486 4420 1 1572 428 252 65 9 chr4 129476329 129476437 -26153683 + ID_B1 SINE B4 90 203 -21 1 1572 316 284 112 47 chr4 129476545 129476567 -26153553 - B2_Mm2 SINE B2 -14 181 160 1 1572 519 82 0 0 chr4 129476567 129476640 -26153480 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1572 365 255 188 18 chr4 129476640 129476787 -26153333 - B3A SINE B2 -36 159 1 1 1572 939 145 0 7 chr4 129477472 129477618 -26152502 - B1_Mur4 SINE Alu -5 145 1 1 1572 1242 102 0 0 chr4 129477724 129477970 -26152150 + (TG)n Simple_repeat Simple_repeat 1 246 0 1 1572 332 307 27 0 chr4 129477979 129478054 -26152066 - RSINE1 SINE B4 -20 145 69 1 1572 371 81 351 9 chr4 129478087 129478198 -26151922 - B2_Mm2 SINE B2 0 195 47 1 1572 1198 108 12 0 chr4 129478230 129478397 -26151723 - B2_Mm1t SINE B2 -22 171 3 1 1572 313 237 0 63 chr4 129478563 129478626 -26151494 + B1F1 SINE Alu 3 61 -88 1 1572 382 250 58 65 chr4 129478577 129478642 -26151478 + MT2B LTR ERVL 105 166 -418 1 1572 880 222 13 54 chr4 129478642 129478866 -26151254 + B3 SINE B2 2 216 0 1 1572 382 219 58 58 chr4 129478866 129478955 -26151165 + MT2B LTR ERVL 167 257 -344 1 1572 765 65 83 0 chr4 129478882 129478990 -26151130 + B1_Mus1 SINE Alu 31 147 -1 1 1572 543 260 139 7 chr4 129479082 129479233 -26150887 - B3A SINE B2 -27 171 1 1 1572 1001 218 24 5 chr4 129479259 129479471 -26150649 - B3 SINE B2 0 216 1 1 1572 189 0 0 0 chr4 129479486 129479507 -26150613 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1572 1579 37 32 0 chr4 129479507 129479694 -26150426 - B2_Mm1t SINE B2 0 193 1 1 1572 766 267 14 37 chr4 129479703 129479841 -26150279 + RCHARR1 DNA MER1_type 8 140 -834 1 1572 1168 71 129 12 chr4 129479841 129480012 -26150108 - B2_Mm2 SINE B2 -4 191 1 1 1572 766 267 14 37 chr4 129480012 129480091 -26150029 + RCHARR1 DNA MER1_type 141 220 -754 1 1572 1279 201 78 14 chr4 129480274 129480567 -26149553 + RCHARR1 DNA MER1_type 233 544 -430 1 1572 357 304 33 0 chr4 129481034 129481126 -26148994 + ID_B1 SINE B4 121 215 -9 1 1572 285 284 0 0 chr4 129481196 129481263 -26148857 - RSINE1 SINE B4 -12 153 87 1 1572 1687 154 84 16 chr4 129481411 129481714 -26148406 + RLTR33 LTR ERVK 1 326 -352 1 1572 1216 22 0 0 chr4 129481714 129481851 -26148269 + B1_Mm SINE Alu 1 137 -10 1 1572 200 59 29 0 chr4 129481851 129481885 -26148235 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1572 1184 124 0 6 chr4 129481895 129482068 -26148052 + B2_Mm2 SINE B2 4 178 -15 1 1572 1251 42 0 0 chr4 129482068 129482211 -26147909 + B1_Mm SINE Alu 1 143 -4 1 1572 198 0 0 0 chr4 129482212 129482234 -26147886 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 1572 1001 177 21 31 chr4 129482234 129482250 -26147870 + B2_Mm1t SINE B2 179 193 0 1 1572 1669 178 24 0 chr4 129482267 129482559 -26147561 + RLTR33 LTR ERVK 380 678 0 1 1572 410 241 0 75 chr4 129482559 129482653 -26147467 - RSINE1 SINE B4 -76 89 3 1 1572 1090 242 48 39 chr4 129482653 129482804 -26147316 + RCHARR1 DNA MER1_type 531 678 -296 1 1572 978 92 48 28 chr4 129482804 129482949 -26147171 - B1_Mus1 SINE Alu 0 148 1 1 1572 1090 242 48 39 chr4 129482949 129483100 -26147020 + RCHARR1 DNA MER1_type 679 830 -144 1 1572 825 96 174 118 chr4 129483100 129483238 -26146882 - B2_Mm2 SINE B2 -7 188 42 1 1572 1410 65 16 0 chr4 129483238 129483422 -26146698 - B2_Mm1a SINE B2 -5 188 2 1 1572 825 96 174 118 chr4 129483422 129483461 -26146659 - B2_Mm2 SINE B2 -154 41 1 1 1572 1090 242 48 39 chr4 129483461 129483488 -26146632 + RCHARR1 DNA MER1_type 831 863 -111 1 1572 584 106 53 11 chr4 129483464 129483559 -26146561 - B2_Mm1t SINE B2 -8 185 87 1 1572 270 0 0 0 chr4 129483578 129483608 -26146512 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 1 1572 858 162 0 22 chr4 129483608 129483747 -26146373 - B1_Mur4 SINE Alu -14 136 1 1 1572 865 246 19 14 chr4 129483771 129483985 -26146135 - ID_B1 SINE B4 -7 217 3 1 1572 233 29 0 29 chr4 129483996 129484031 -26146089 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1572 987 95 0 55 chr4 129484035 129484180 -26145940 - B1_Mur4 SINE Alu -12 138 2 1 1572 269 148 74 0 chr4 129484180 129484234 -26145886 + RCHARR1 DNA MER1_type 839 896 -78 1 1572 474 252 8 16 chr4 129484245 129484366 -26145754 - PB1D9 SINE Alu 0 120 1 1 1572 1200 113 11 6 chr4 129484548 129484726 -26145394 + B2_Mm1t SINE B2 1 179 -14 1 1572 308 152 0 36 chr4 129484773 129484838 -26145282 + B2_Mm2 SINE B2 47 109 -107 1 1572 252 0 0 0 chr4 129484853 129484881 -26145239 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1572 231 36 0 0 chr4 129484887 129484915 -26145205 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1572 323 308 58 15 chr4 129484927 129485114 -26145006 + L1MC4a LINE L1 5689 5883 -1999 1 1572 486 0 0 0 chr4 129485140 129485194 -26144926 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1572 378 267 124 0 chr4 129485352 129485457 -26144663 + PB1 SINE Alu 7 124 -3 1 1572 391 173 59 47 chr4 129485617 129485702 -26144418 - B3 SINE B2 -120 96 11 1 1572 333 0 0 0 chr4 129485707 129485744 -26144376 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1572 218 186 282 10 chr4 129485746 129485849 -26144271 - B3A SINE B2 -59 139 9 1 1572 226 272 46 69 chr4 129486258 129486345 -26143775 - B3 SINE B2 -103 113 29 1 1572 247 236 207 91 chr4 129486699 129486820 -26143300 + RSINE1 SINE B4 10 144 -21 1 1572 649 236 8 8 chr4 129486869 129486993 -26143127 + B3A SINE B2 1 124 -74 1 1572 420 20 0 0 chr4 129487014 129487063 -26143057 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1572 304 234 254 27 chr4 129487162 129487272 -26142848 + B1_Mus1 SINE Alu 5 139 -9 1 1572 818 157 15 15 chr4 129487285 129487421 -26142699 + B1_Mur2 SINE Alu 12 147 -2 1 1572 231 256 35 152 chr4 129487299 129487497 -26142623 - YREP_Mm Unknown Unknown -1521 291 117 1 1572 1234 99 10 59 chr4 129487784 129487987 -26142133 - B2_Mm1a SINE B2 0 193 1 1 1572 189 360 151 8 chr4 129488734 129488860 -26141260 - MIRb SINE MIR -123 145 2 1 1572 1589 163 69 77 chr4 129489099 129489533 -26140587 - RMER4B LTR ERVK 0 585 103 1 1572 396 197 0 14 chr4 129489580 129489652 -26140468 - B1F SINE Alu -11 138 68 1 1572 28 0 0 0 chr4 129489657 129489685 -26140435 + AT_rich Low_complexity Low_complexity 1 28 0 1 1572 425 256 0 0 chr4 129489688 129489770 -26140350 - ID4 SINE ID 0 83 2 1 1572 507 17 0 0 chr4 129489944 129490004 -26140116 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1572 719 275 43 93 chr4 129490004 129490219 -26139901 - B4A SINE B4 -27 265 62 1 1572 1224 48 0 0 chr4 129490219 129490366 -26139754 - B1_Mm SINE Alu 0 147 1 1 1572 719 275 43 93 chr4 129490366 129490407 -26139713 - B4A SINE B4 -231 61 22 1 1572 781 120 145 0 chr4 129490488 129490605 -26139515 - B1_Mus1 SINE Alu -12 136 3 1 1572 2190 143 147 44 chr4 129490623 129490761 -26139359 - RMER6A LTR ERVK -117 639 505 1 1572 3617 33 38 0 chr4 129490761 129491181 -26138939 - RLTR10C LTR ERVK 0 436 1 1 1572 2190 143 147 44 chr4 129491181 129491323 -26138797 - RMER6A LTR ERVK -252 504 333 1 1572 411 21 0 0 chr4 129491323 129491371 -26138749 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1572 2190 143 172 38 chr4 129491371 129491648 -26138472 - RMER6A LTR ERVK -382 338 3 1 1572 253 316 0 0 chr4 129491648 129491704 -26138416 - B1_Mur1 SINE Alu -37 112 57 1 1572 876 183 8 76 chr4 129492083 129492320 -26137800 - RMER10A LTR ERVL 0 442 222 1 1572 905 180 77 67 chr4 129492344 129492552 -26137568 - RMER10A LTR ERVL -204 238 29 1 1572 943 129 14 0 chr4 129492618 129492757 -26137363 - B1_Mur4 SINE Alu -7 143 3 1 1572 261 276 17 0 chr4 129493012 129493070 -26137050 - ID4 SINE ID -23 60 2 1 1572 1129 56 0 0 chr4 129493130 129493273 -26136847 - B1_Mus1 SINE Alu 0 148 6 1 1572 906 218 50 154 chr4 129493300 129493381 -26136739 - B4 SINE B4 0 292 221 1 1572 853 137 36 7 chr4 129493381 129493521 -26136599 - B1_Mur1 SINE Alu -3 146 3 1 1572 906 222 51 148 chr4 129493521 129493748 -26136372 - B4 SINE B4 -72 220 19 1 1572 205 333 0 0 chr4 129493757 129493814 -26136306 - MIR3 SINE MIR -51 157 101 1 1572 1830 214 54 28 chr4 129493825 129494011 -26136109 - MTD LTR MaLR -1 418 229 1 1572 2505 160 67 43 chr4 129494011 129494521 -26135599 + RLTR28 LTR ERVL 1 522 -2 1 1572 1830 214 54 28 chr4 129494521 129494723 -26135397 - MTD LTR MaLR -191 228 20 1 1572 212 171 0 0 chr4 129494723 129494764 -26135356 + A-rich Low_complexity Low_complexity 1 41 0 1 1572 186 239 40 107 chr4 129494807 129494882 -26135238 + MIR3 SINE MIR 5 74 -134 1 1572 394 296 41 21 chr4 129495414 129495559 -26134561 + MIRb SINE MIR 108 255 -13 1 1572 195 69 0 0 chr4 129496484 129496513 -26133607 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1572 229 282 63 13 chr4 129496582 129496661 -26133459 - ID4_ SINE ID 0 83 1 1 1572 218 100 0 0 chr4 129496677 129496707 -26133413 - B1_Mur3 SINE Alu -52 97 68 1 1572 28 61 0 0 chr4 129497394 129497443 -26132677 + GC_rich Low_complexity Low_complexity 1 49 0 1 1572 396 290 0 49 chr4 129497462 129497647 -26132473 + (CGG)n Simple_repeat Simple_repeat 3 178 0 1 1572 180 0 0 0 chr4 129497667 129497687 -26132433 + (CCG)n Simple_repeat Simple_repeat 1 20 0 1 1572 321 68 0 0 chr4 129497726 129497770 -26132350 + (CCG)n Simple_repeat Simple_repeat 1 44 0 1 1572 30 27 0 0 chr4 129497851 129497888 -26132232 + GC_rich Low_complexity Low_complexity 1 37 0 1 1572 228 274 52 52 chr4 129499002 129499079 -26131041 - MT2B LTR ERVL -342 259 183 1 1572 298 261 23 45 chr4 129499011 129499085 -26131035 - PB1D10 SINE Alu -25 95 19 1 1573 234 287 46 34 chr4 129499181 129499287 -26130833 + B1F2 SINE Alu 1 107 -42 1 1573 287 296 143 8 chr4 129499520 129499646 -26130474 - B1F SINE Alu -4 145 3 1 1573 208 194 0 0 chr4 129499934 129499970 -26130150 - MIR SINE MIR -154 108 73 1 1573 208 244 22 0 chr4 129500822 129500867 -26129253 + CT-rich Low_complexity Low_complexity 1 46 0 1 1573 604 255 84 69 chr4 129502280 129502482 -26127638 + B3A SINE B2 6 210 -6 2 1573 460 211 43 50 chr4 129502823 129502963 -26127157 - B1_Mur2 SINE Alu -9 140 2 3 1573 1189 42 7 0 chr4 129503030 129503174 -26126946 - B1_Mus2 SINE Alu -1 146 2 4 1573 269 216 23 149 chr4 129505691 129505778 -26124342 - BC1_Mm scRNA scRNA -72 80 5 5 1573 213 39 0 0 chr4 129506039 129506065 -26124055 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1573 1147 49 14 0 chr4 129506065 129506207 -26123913 - B1_Mus1 SINE Alu -3 145 2 7 1573 1258 128 11 16 chr4 129506228 129506419 -26123701 - B2_Mm1t SINE B2 -3 190 1 8 1573 1387 74 16 10 chr4 129506434 129506626 -26123494 - B2_Mm2 SINE B2 -2 193 1 9 1573 573 167 154 31 chr4 129506743 129506873 -26123247 - B1_Mus1 SINE Alu -1 147 2 1 1573 507 335 64 20 chr4 129507845 129508078 -26122042 + L2a LINE L2 2584 2827 -592 1 1573 733 52 246 17 chr4 129508078 129508196 -26121924 + B1_Mus1 SINE Alu 2 146 -2 1 1573 507 335 64 20 chr4 129508196 129508212 -26121908 + L2a LINE L2 2828 2844 -575 1 1573 206 434 74 0 chr4 129508346 129508535 -26121585 + L2a LINE L2 2973 3175 -251 1 1573 626 21 96 0 chr4 129509696 129509790 -26120330 - B1_Mus2 SINE Alu -1 146 44 1 1573 233 170 94 0 chr4 129509750 129509803 -26120317 - 4.5SRNA scRNA scRNA -8 86 29 1 1573 583 127 17 60 chr4 129509857 129509974 -26120146 + B1_Mur4 SINE Alu 12 123 -27 1 1573 184 30 61 0 chr4 129510115 129510148 -26119972 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1573 510 223 125 0 chr4 129510181 129510293 -26119827 - B3 SINE B2 -90 126 1 1 1573 314 195 78 33 chr4 129510591 129510681 -26119439 - B3A SINE B2 -104 94 1 1 1573 332 268 181 13 chr4 129510802 129510957 -26119163 - ID_B1 SINE B4 -39 185 5 1 1573 1047 58 0 0 chr4 129511207 129511344 -26118776 + B1_Mm SINE Alu 7 143 -4 2 1573 1217 75 104 0 chr4 129511575 129511748 -26118372 - B2_Mm1a SINE B2 -1 192 2 2 1573 413 105 118 0 chr4 129512485 129512561 -26117559 - B1_Mur2 SINE Alu -9 140 56 2 1573 289 264 11 65 chr4 129512550 129512643 -26117477 - ID_B1 SINE B4 -15 209 122 2 1573 685 134 25 0 chr4 129512644 129512763 -26117357 - B1_Mur4 SINE Alu -20 130 9 2 1573 355 258 0 0 chr4 129512781 129512874 -26117246 - B1_Mus1 SINE Alu -34 114 22 2 1573 256 258 30 0 chr4 129513117 129513183 -26116937 - ID SINE ID -148 76 9 2 1573 397 216 40 20 chr4 129513219 129513318 -26116802 - PB1D9 SINE Alu -7 113 13 2 1573 358 219 171 144 chr4 129513318 129513400 -26116720 - ID_B1 SINE B4 -7 217 32 2 1573 565 186 18 9 chr4 129513698 129513821 -26116299 - B1_Mur4 SINE Alu -34 116 1 2 1573 332 282 40 57 chr4 129513833 129513957 -26116163 - B3 SINE B2 -47 169 48 2 1573 207 0 0 0 chr4 129513964 129513987 -26116133 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1573 236 253 52 26 chr4 129513987 129514000 -26116120 - B2_Mm2 SINE B2 -116 79 64 3 1573 1137 89 0 0 chr4 129514000 129514146 -26115974 - B1_Mus1 SINE Alu 0 148 3 3 1573 312 218 18 1 chr4 129514146 129514209 -26115911 - B3A SINE B2 -132 63 1 3 1573 252 77 0 0 chr4 129514242 129514281 -26115839 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1573 356 233 0 75 chr4 129514293 129514386 -26115734 + B3 SINE B2 5 90 -126 3 1573 515 286 71 27 chr4 129514487 129514670 -26115450 - B3A SINE B2 -6 192 2 3 1573 554 268 58 0 chr4 129514685 129514823 -26115297 - B1_Mur1 SINE Alu -3 146 1 3 1573 1506 39 39 0 chr4 129514823 129515004 -26115116 - B2_Mm2 SINE B2 -5 190 2 3 1573 255 260 54 14 chr4 129515074 129515148 -26114972 - B1F SINE Alu -55 94 18 3 1573 395 283 0 48 chr4 129515211 129515378 -26114742 + (TATG)n Simple_repeat Simple_repeat 3 161 0 3 1573 555 112 0 0 chr4 129515472 129515561 -26114559 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1573 649 257 83 6 chr4 129515561 129515741 -26114379 - ID_B1 SINE B4 -29 195 2 4 1573 292 282 160 64 chr4 129517354 129517479 -26112641 + RSINE1 SINE B4 24 160 -5 4 1573 260 186 108 54 chr4 129517842 129517916 -26112204 - ID4_ SINE ID -2 81 4 4 1573 503 214 0 39 chr4 129518183 129518285 -26111835 + RSINE1 SINE B4 2 99 -66 4 1573 358 211 62 7 chr4 129518328 129518427 -26111693 - PB1D9 SINE Alu -2 147 37 4 1573 1513 64 0 11 chr4 129518476 129518666 -26111454 - B2_Mm1a SINE B2 -5 188 1 4 1573 1479 60 16 5 chr4 129518669 129518853 -26111267 - B2_Mm2 SINE B2 -9 186 1 4 1573 1182 48 14 0 chr4 129518883 129519028 -26111092 + B1_Mus1 SINE Alu 2 148 0 4 1573 664 206 30 0 chr4 129519080 129519211 -26110909 + B1_Mus1 SINE Alu 1 135 -13 4 1573 482 178 23 78 chr4 129519243 129519371 -26110749 + B1_Mus1 SINE Alu 28 148 0 5 1573 544 211 113 8 chr4 129520355 129520479 -26109641 + B1_Mur1 SINE Alu 5 141 -8 5 1573 751 209 88 16 chr4 129520738 129520932 -26109188 + ID_B1 SINE B4 5 212 -12 5 1573 240 35 0 0 chr4 129521026 129521055 -26109065 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 1573 1115 81 0 6 chr4 129521055 129521216 -26108904 - B2_Mm2 SINE B2 -34 161 2 5 1573 1139 168 207 7 chr4 129521216 129521513 -26108607 - ORR1B1 LTR MaLR -37 357 1 5 1573 1060 67 0 0 chr4 129521909 129522043 -26108077 + B1_Mus1 SINE Alu 5 138 -10 5 1573 522 0 0 0 chr4 129522043 129522101 -26108019 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1573 269 219 45 0 chr4 129522113 129522185 -26107935 + PB1D9 SINE Alu 3 76 -44 5 1573 736 159 71 14 chr4 129523132 129523272 -26106848 + B1_Mur4 SINE Alu 3 150 0 5 1573 863 79 248 13 chr4 129523284 129523437 -26106683 + B2_Mm2 SINE B2 1 189 -6 6 1573 317 242 50 2 chr4 129523437 129523545 -26106575 + PB1D9 SINE Alu 29 144 -5 6 1573 260 271 33 33 chr4 129523551 129523612 -26106508 - PB1D9 SINE Alu -58 62 2 6 1573 321 122 361 18 chr4 129524018 129524126 -26105994 - B2_Mm2 SINE B2 -4 191 47 6 1573 1038 95 17 23 chr4 129524197 129524369 -26105751 - B2_Mm1t SINE B2 -22 171 1 6 1573 446 192 81 4 chr4 129524680 129524790 -26105330 + B1_Mus2 SINE Alu 36 149 0 6 1573 243 164 0 0 chr4 129525616 129525677 -26104443 + A-rich Low_complexity Low_complexity 1 61 0 6 1573 198 0 0 0 chr4 129526857 129526879 -26103241 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1573 733 129 6 125 chr4 129527480 129527640 -26102480 - B1_Mur4 SINE Alu -9 141 1 6 1573 815 213 71 5 chr4 129527827 129528025 -26102095 + RMER4B LTR ERVK 17 227 -358 6 1573 363 188 118 0 chr4 129528053 129528138 -26101982 + RMER4B LTR ERVK 298 392 -193 6 1573 749 104 26 9 chr4 129528220 129528336 -26101784 + PB1D9 SINE Alu 3 120 0 7 1573 305 284 15 0 chr4 129529247 129529314 -26100806 - B3A SINE B2 -22 176 109 7 1573 1378 77 50 0 chr4 129529563 129529744 -26100376 + B2_Mm1a SINE B2 1 190 -3 7 1573 474 291 0 29 chr4 129529744 129529881 -26100239 + B1_Mm SINE Alu 1 134 -13 7 1573 340 240 97 24 chr4 129530135 129530259 -26099861 - ID_B1 SINE B4 0 224 92 7 1573 476 190 117 33 chr4 129530407 129530527 -26099593 + B1_Mur4 SINE Alu 1 130 -20 7 1573 258 270 78 35 chr4 129530692 129530834 -26099286 + MLT1D LTR MaLR 248 395 -110 7 1573 587 212 102 0 chr4 129530931 129531049 -26099071 - B1_Mur3 SINE Alu -19 130 1 7 1573 476 305 53 0 chr4 129531081 129531232 -26098888 - RSINE1 SINE B4 -2 163 5 7 1573 831 110 213 7 chr4 129531232 129531387 -26098733 - B2_Mm1t SINE B2 -5 188 2 7 1573 307 195 244 0 chr4 129531510 129531592 -26098528 + PB1D10 SINE Alu 8 109 -8 8 1573 596 161 0 35 chr4 129532128 129532244 -26097876 - ID_B1 SINE B4 -2 222 111 8 1573 450 228 27 81 chr4 129532244 129532271 -26097849 - B1F2 SINE Alu 0 144 10 8 1573 338 162 135 2 chr4 129532272 129532369 -26097751 - PB1D10 SINE Alu -7 113 2 8 1573 1219 36 0 0 chr4 129534311 129534451 -26095669 - B1_Mus2 SINE Alu -6 141 2 8 1573 794 224 48 5 chr4 129534483 129534689 -26095431 - B3 SINE B2 0 216 2 8 1573 490 198 0 30 chr4 129534711 129534810 -26095310 - B1_Mur1 SINE Alu -13 136 41 8 1573 1200 22 0 0 chr4 129534924 129535062 -26095058 - B1_Mus2 SINE Alu -9 138 1 8 1573 315 248 6 153 chr4 129535165 129535322 -26094798 - B1F1 SINE Alu -7 142 9 8 1573 277 257 54 0 chr4 129535258 129535332 -26094788 - ID_B1 SINE B4 -67 157 80 8 1573 644 266 34 6 chr4 129535352 129535530 -26094590 - B3A SINE B2 -14 184 2 9 1573 320 244 103 0 chr4 129535675 129535753 -26094367 - PB1D7 SINE Alu -34 86 1 9 1573 744 199 14 21 chr4 129535834 129535978 -26094142 + B1_Mur1 SINE Alu 5 147 -2 9 1573 457 165 103 68 chr4 129536270 129536387 -26093733 + PB1 SINE Alu 5 125 -2 9 1573 645 250 21 26 chr4 129537348 129537541 -26092579 + B2_Mm2 SINE B2 1 192 -3 9 1573 372 309 224 16 chr4 129537643 129537893 -26092227 - MER63D DNA AcHobo -558 503 202 9 1573 495 286 6 75 chr4 129537893 129538052 -26092068 + RSINE1 SINE B4 3 150 -15 9 1573 673 162 18 18 chr4 129538174 129538287 -26091833 - PB1D9 SINE Alu -6 114 2 9 1573 212 344 59 43 chr4 129538930 129539119 -26091001 + MIRb SINE MIR 13 198 -70 9 1573 610 302 128 18 chr4 129539209 129539593 -26090527 - MLT1C LTR MaLR 0 467 42 9 1573 522 272 32 0 chr4 129539863 129539988 -26090132 + MLT1A0 LTR MaLR 237 365 0 1 1573 1193 49 0 14 chr4 129540136 129540274 -26089846 + B1_Mus1 SINE Alu 1 138 -10 1 1573 189 0 0 0 chr4 129540274 129540295 -26089825 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1573 423 0 0 0 chr4 129540359 129540406 -26089714 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1573 861 164 0 22 chr4 129540406 129540543 -26089577 - B1_Mur2 SINE Alu -13 136 3 1 1573 1246 244 102 21 chr4 129540549 129541017 -26089103 + L1MB5 LINE L1 5587 6104 -80 1 1573 920 109 0 0 chr4 129541177 129541315 -26088805 + B1_Mus1 SINE Alu 6 143 -5 1 1573 225 0 0 0 chr4 129541315 129541340 -26088780 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1573 1303 68 39 6 chr4 129541350 129541528 -26088592 + B2_Mm2 SINE B2 2 185 -10 1 1573 684 143 42 0 chr4 129541553 129541672 -26088448 + B3 SINE B2 7 130 -86 1 1573 416 299 126 34 chr4 129541744 129542007 -26088113 + L1MB5 LINE L1 5878 6164 -10 1 1573 220 298 47 12 chr4 129542445 129542530 -26087590 + MIR SINE MIR 119 206 -56 1 1573 25 51 0 0 chr4 129542546 129542585 -26087535 + AT_rich Low_complexity Low_complexity 1 39 0 1 1573 229 282 0 82 chr4 129542601 129542686 -26087434 - B4 SINE B4 0 292 215 1 1573 1180 55 7 0 chr4 129542689 129542835 -26087285 - B1_Mus2 SINE Alu 0 147 1 1 1573 448 236 28 0 chr4 129542845 129542951 -26087169 - PB1D10 SINE Alu -7 110 2 1 1573 1508 67 0 0 chr4 129543090 129543283 -26086837 - B2_Mm1t SINE B2 0 193 1 1 1573 385 200 0 13 chr4 129543313 129543389 -26086731 + B4 SINE B4 4 78 -214 1 1573 812 177 62 72 chr4 129543455 129543650 -26086470 + B3 SINE B2 7 199 -17 1 1573 976 45 0 29 chr4 129543688 129543819 -26086301 + B1_Mus2 SINE Alu 13 141 -6 1 1573 531 0 0 0 chr4 129543819 129543878 -26086242 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1 1573 887 184 18 0 chr4 129544740 129544908 -26085212 + B3 SINE B2 39 209 -7 1 1573 22 70 0 0 chr4 129544908 129544951 -26085169 + AT_rich Low_complexity Low_complexity 1 43 0 1 1573 812 97 0 0 chr4 129545150 129545264 -26084856 - B1_Mus1 SINE Alu -13 135 22 1 1573 961 129 199 0 chr4 129545651 129545837 -26084283 + URR1A DNA MER1_type 1 223 -3 1 1573 3065 56 0 15 chr4 129546102 129546502 -26083618 - L1Md_F2 LINE L1 0 6582 6189 1 1573 403 138 15 0 chr4 129546525 129546590 -26083530 - B1_Mur1 SINE Alu -20 129 64 1 1573 1263 84 0 0 chr4 129546599 129546802 -26083318 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 1 1573 399 252 97 45 chr4 129546894 129547048 -26083072 - RSINE1 SINE B4 0 165 4 1 1573 529 61 97 48 chr4 129547496 129547599 -26082521 - B2_Mm1t SINE B2 -4 189 82 1 1573 2441 137 55 123 chr4 129548015 129548497 -26081623 + RLTR24 LTR ERV1 2 450 -79 1 1573 1326 95 10 16 chr4 129548497 129548690 -26081430 - B2_Mm1t SINE B2 0 193 2 1 1573 2441 137 55 123 chr4 129548690 129548774 -26081346 + RLTR24 LTR ERV1 451 529 0 1 1573 1045 109 0 26 chr4 129548998 129549149 -26080971 - B1_Mur4 SINE Alu -3 147 1 1 1573 217 242 20 13 chr4 129549565 129549716 -26080404 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1573 319 261 34 0 chr4 129550290 129550378 -26079742 - ORR1E LTR MaLR -1 378 288 1 1573 599 115 0 0 chr4 129550398 129550494 -26079626 - B1_Mus2 SINE Alu -1 146 51 1 1573 629 261 50 29 chr4 129550502 129550743 -26079377 - ORR1E LTR MaLR -108 251 6 1 1573 533 339 26 5 chr4 129550981 129551174 -26078946 - ORR1E LTR MaLR -162 197 1 1 1573 451 196 28 70 chr4 129551201 129551293 -26078827 + L1MB4 LINE L1 5690 5780 -400 1 1573 303 28 0 0 chr4 129551293 129551329 -26078791 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1573 451 196 28 70 chr4 129551329 129551379 -26078741 + L1MB4 LINE L1 5781 5826 -354 1 1573 600 270 29 0 chr4 129551379 129551516 -26078604 + RSINE1 SINE B4 3 143 -22 1 1573 558 188 0 0 chr4 129551540 129551757 -26078363 + (CA)n Simple_repeat Simple_repeat 1 217 0 1 1573 268 175 123 70 chr4 129551758 129551866 -26078254 + L1MB3 LINE L1 5787 5902 -281 1 1573 986 151 145 36 chr4 129551873 129552066 -26078054 + B3 SINE B2 2 215 -1 1 1573 530 283 43 83 chr4 129552104 129552381 -26077739 + L1MB3 LINE L1 5917 6182 -1 1 1573 22 0 0 0 chr4 129552531 129552553 -26077567 + AT_rich Low_complexity Low_complexity 1 22 0 1 1573 400 287 0 102 chr4 129552963 129553091 -26077029 - B1F1 SINE Alu -33 116 2 1 1573 646 301 58 0 chr4 129553212 129553418 -26076702 + Lx8 LINE L1 6859 7076 -397 1 1573 752 153 8 0 chr4 129553421 129553552 -26076568 + B1_Mur4 SINE Alu 19 150 0 1 1573 237 279 16 0 chr4 129553552 129553613 -26076507 + GA-rich Low_complexity Low_complexity 6 67 0 1 1573 726 207 86 25 chr4 129553613 129553811 -26076309 + B3 SINE B2 1 210 -6 1 1573 327 261 64 21 chr4 129553813 129553954 -26076166 + Lx8 LINE L1 7326 7472 -1 1 1573 243 273 106 26 chr4 129554007 129554120 -26076000 + ID_B1 SINE B4 4 125 -99 1 1573 647 255 51 0 chr4 129554176 129554333 -26075787 + B3 SINE B2 52 216 0 1 1573 231 312 58 21 chr4 129555545 129555735 -26074385 - L1MEe LINE L1 -4131 723 527 1 1573 857 309 107 14 chr4 129555834 129556330 -26073790 - L1M5 LINE L1 -3255 2891 2350 1 1573 378 261 223 16 chr4 129556803 129556924 -26073196 + MLT1A1 LTR MaLR 261 406 -2 1 1573 802 74 22 14 chr4 129556943 129557081 -26073039 + (TTC)n Simple_repeat Simple_repeat 2 140 0 1 1573 902 118 0 0 chr4 129557083 129557210 -26072910 + B1_Mur3 SINE Alu 17 143 -6 1 1573 185 65 32 0 chr4 129557221 129557252 -26072868 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1573 223 186 0 48 chr4 129557356 129557418 -26072702 + (TTA)n Simple_repeat Simple_repeat 1 59 0 1 1573 180 0 0 0 chr4 129557507 129557527 -26072593 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1573 288 279 39 143 chr4 129557535 129557765 -26072355 + RMER10A LTR ERVL 212 417 -25 1 1573 228 186 50 20 chr4 129557896 129557995 -26072125 + CT-rich Low_complexity Low_complexity 2 103 0 1 1573 252 0 0 0 chr4 129558009 129558037 -26072083 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1573 276 190 21 97 chr4 129558142 129558235 -26071885 + L1MEf LINE L1 1414 1533 -4667 1 1573 435 149 101 22 chr4 129558393 129558482 -26071638 - B1_Mur2 SINE Alu -6 143 48 1 1573 223 282 42 0 chr4 129558519 129558590 -26071530 + L2a LINE L2 2680 2753 -666 1 1573 373 110 27 0 chr4 129558597 129558670 -26071450 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 1 1573 520 273 23 0 chr4 129558702 129558830 -26071290 - RSINE1 SINE B4 -32 133 3 1 1573 345 289 254 9 chr4 129558831 129558996 -26071124 + L2a LINE L2 2746 2971 -455 1 1573 336 24 0 0 chr4 129558996 129559037 -26071083 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1573 345 311 175 42 chr4 129559037 129559427 -26070693 + L2a LINE L2 2972 3420 -6 1 1573 24 0 0 0 chr4 129560060 129560084 -26070036 + GC_rich Low_complexity Low_complexity 1 24 0 1 1573 427 290 130 58 chr4 129560141 129560364 -26069756 + B4 SINE B4 6 244 -48 1 1573 291 260 12 49 chr4 129560407 129560488 -26069632 + ID4 SINE ID 1 78 -5 1 1573 301 92 30 30 chr4 129560530 129560597 -26069523 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 1 1573 221 150 0 0 chr4 129560617 129560657 -26069463 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1573 360 0 0 0 chr4 129560658 129560698 -26069422 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1573 239 211 70 0 chr4 129560720 129560777 -26069343 - PB1 SINE Alu -40 87 27 1 1573 295 117 0 118 chr4 129560852 129560920 -26069200 + B1_Mur4 SINE Alu 1 60 -90 1 1573 575 230 0 35 chr4 129560920 129561091 -26069029 + GA-rich Low_complexity Low_complexity 1 165 0 1 1573 262 186 0 48 chr4 129561092 129561154 -26068966 + RLTR25B LTR ERVK 427 485 -543 1 1573 637 99 38 38 chr4 129561110 129561201 -26068919 + B1_Mus2 SINE Alu 42 134 -13 1 1573 243 0 0 0 chr4 129561201 129561228 -26068892 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1573 637 99 38 38 chr4 129561228 129561241 -26068879 + B1_Mus2 SINE Alu 135 146 -1 1 1573 226 279 33 0 chr4 129561681 129561742 -26068378 - ID4_ SINE ID -19 64 2 1 1573 268 314 81 24 chr4 129561817 129561941 -26068179 - B1_Mur3 SINE Alu -16 133 3 1 1573 346 193 370 0 chr4 129561840 129561975 -26068145 - ID_B1 SINE B4 -3 221 37 1 1573 1611 103 74 180 chr4 129561975 129562140 -26067980 + ORR1A1 LTR MaLR 1 146 -200 1 1573 1152 88 0 0 chr4 129562140 129562288 -26067832 - B1_Mus1 SINE Alu 0 148 1 1 1573 1611 103 74 180 chr4 129562288 129562455 -26067665 + ORR1A1 LTR MaLR 147 304 -42 1 1573 1530 57 5 20 chr4 129562455 129562651 -26067469 + B2_Mm1t SINE B2 1 193 0 1 1573 1611 145 59 187 chr4 129562651 129562712 -26067408 + ORR1A1 LTR MaLR 305 379 0 1 1573 581 212 198 12 chr4 129562773 129562926 -26067194 - B3 SINE B2 0 216 32 1 1573 189 0 0 0 chr4 129562926 129562947 -26067173 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1573 180 0 0 0 chr4 129562960 129562980 -26067140 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1573 453 56 0 5 chr4 129562995 129563059 -26067061 - B2_Mm2 SINE B2 -107 109 48 1 1573 447 19 0 0 chr4 129563092 129563144 -26066976 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 1573 1156 78 0 0 chr4 129563147 129563288 -26066832 - B1_Mus2 SINE Alu -5 142 2 1 1573 1274 97 11 0 chr4 129563288 129563463 -26066657 - B2_Mm1t SINE B2 -16 177 1 1 1573 792 321 99 37 chr4 129563528 129563557 -26066563 + MER74B LTR ERVL 53 82 -540 1 1573 1278 41 0 0 chr4 129563557 129563704 -26066416 - B1_Mus2 SINE Alu 0 147 1 1 1573 792 321 99 37 chr4 129563704 129564110 -26066010 + MER74B LTR ERVL 83 514 -108 1 1573 572 270 104 0 chr4 129564261 129564424 -26065696 - B3A SINE B2 -18 180 1 1 1573 515 185 210 0 chr4 129564572 129564691 -26065429 - B1_Mur3 SINE Alu 0 149 6 1 1573 207 69 0 0 chr4 129564695 129564724 -26065396 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1573 1139 86 0 0 chr4 129564724 129564864 -26065256 - B1_Mus1 SINE Alu -8 140 1 1 1573 740 254 112 16 chr4 129564867 129565055 -26065065 - ID_B1 SINE B4 -2 222 17 1 1573 1008 224 39 10 chr4 129565187 129565390 -26064730 - B3 SINE B2 -1 215 7 2 1573 496 346 79 19 chr4 129565394 129565709 -26064411 - L1M4 LINE L1 -1720 4426 4093 2 1573 508 188 107 0 chr4 129565874 129565986 -26064134 + ID_B1 SINE B4 99 222 -2 2 1573 467 268 159 0 chr4 129565998 129566136 -26063984 + RSINE1 SINE B4 3 162 -3 2 1573 192 40 0 0 chr4 129566139 129566164 -26063956 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2 1573 381 271 124 29 chr4 129566176 129566313 -26063807 + RSINE1 SINE B4 3 152 -13 2 1573 454 322 60 39 chr4 129566324 129566599 -26063521 - L1M4 LINE L1 -2134 4012 3731 2 1573 226 341 130 92 chr4 129567042 129567078 -26063042 - MLT1A1 LTR MaLR -1 407 372 2 1573 394 286 29 0 chr4 129567078 129567183 -26062937 + PB1D10 SINE Alu 2 109 -8 2 1573 226 341 130 92 chr4 129567183 129567334 -26062786 - MLT1A1 LTR MaLR -37 371 217 2 1573 1116 52 22 0 chr4 129567334 129567469 -26062651 - B1_Mus2 SINE Alu -9 138 1 2 1573 226 341 130 92 chr4 129567469 129567648 -26062472 - MLT1A1 LTR MaLR -192 216 26 2 1573 247 167 15 15 chr4 129567661 129567728 -26062392 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 2 1573 1264 48 0 0 chr4 129567787 129567934 -26062186 + B1_Mus1 SINE Alu 2 148 0 2 1573 823 196 7 0 chr4 129568145 129568288 -26061832 + B1_Mur4 SINE Alu 1 144 -6 2 1573 406 112 36 48 chr4 129568603 129568687 -26061433 - L1Md_F2 LINE L1 -1 6581 6499 2 1573 660 202 0 0 chr4 129568793 129568902 -26061218 - PB1D9 SINE Alu -11 109 1 2 1573 187 308 43 58 chr4 129569055 129569077 -26061043 + L2 LINE L2 1310 1330 -2089 2 1573 966 263 5 0 chr4 129569077 129569282 -26060838 - B3 SINE B2 -10 206 1 2 1573 187 308 43 58 chr4 129569282 129569397 -26060723 + L2 LINE L2 1331 1445 -1974 2 1573 1259 74 80 0 chr4 129569534 129569709 -26060411 + B2_Mm2 SINE B2 1 189 -6 2 1573 1439 80 5 5 chr4 129569713 129569902 -26060218 + B2_Mm2 SINE B2 1 189 -6 2 1573 234 266 29 96 chr4 129569903 129570007 -26060113 + RLTR25B LTR ERVK 418 514 -514 2 1573 464 232 20 0 chr4 129569928 129570027 -26060093 + B1_Mur1 SINE Alu 40 140 -9 2 1573 198 71 0 0 chr4 129570027 129570055 -26060065 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1573 1470 137 17 4 chr4 129570402 129570637 -26059483 - RLTR14 LTR ERV1 -140 242 5 2 1573 352 288 77 28 chr4 129570662 129570856 -26059264 - MLT1A0 LTR MaLR -185 223 1 2 1573 2684 111 7 22 chr4 129571139 129571544 -26058576 + MTB_Mm LTR MaLR 9 407 0 2 1573 720 0 0 0 chr4 129571683 129571763 -26058357 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 2 1573 1451 67 0 6 chr4 129571763 129571943 -26058177 - B2_Mm2 SINE B2 -16 179 1 2 1573 1083 92 0 0 chr4 129572044 129572186 -26057934 - B1_Mus1 SINE Alu -6 142 1 2 1573 827 230 0 45 chr4 129572196 129572396 -26057724 - B3A SINE B2 -5 193 3 2 1573 418 17 17 17 chr4 129572411 129572471 -26057649 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 2 1573 560 195 127 0 chr4 129572477 129572595 -26057525 - B1_Mur1 SINE Alu -12 137 5 2 1573 1186 159 168 0 chr4 129572598 129572824 -26057296 + ORR1B1 LTR MaLR 1 264 -130 2 1573 730 250 0 0 chr4 129572827 129572967 -26057153 + U1 snRNA snRNA 12 151 -14 2 1573 590 74 49 0 chr4 129573194 129573275 -26056845 - ORR1B2 LTR MaLR 0 367 283 2 1573 440 311 20 13 chr4 129573267 129573417 -26056703 - ORR1B2 LTR MaLR -268 151 1 2 1573 347 345 0 18 chr4 129573417 129573500 -26056620 - ID_B1 SINE B4 -62 162 82 2 1573 234 387 42 7 chr4 129573564 129573707 -26056413 + L2a LINE L2 3276 3423 -3 2 1573 1081 114 0 0 chr4 129573767 129573907 -26056213 - B1_Mus1 SINE Alu -8 140 1 2 1573 410 351 15 15 chr4 129573969 129574174 -26055946 + L1MC5 LINE L1 5602 5806 -2076 2 1573 321 240 20 20 chr4 129575345 129575443 -26054677 + L1MC5 LINE L1 6809 6906 -1136 2 1573 470 256 32 60 chr4 129575557 129575818 -26054302 - MTEb LTR MaLR 0 379 105 2 1573 371 103 44 0 chr4 129575826 129575894 -26054226 + (CACCAT)n Simple_repeat Simple_repeat 4 74 0 2 1573 838 226 50 45 chr4 129575993 129576213 -26053907 + MTD LTR MaLR 3 211 -208 2 1573 185 65 32 0 chr4 129576213 129576244 -26053876 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1573 391 287 0 69 chr4 129576244 129576256 -26053864 + MTD LTR MaLR 203 212 -184 2 1573 21 0 0 0 chr4 129577669 129577690 -26052430 + AT_rich Low_complexity Low_complexity 1 21 0 2 1573 501 207 336 0 chr4 129577690 129577830 -26052290 + MTD LTR MaLR 196 382 -37 2 1573 299 246 140 103 chr4 129577826 129577962 -26052158 + B4 SINE B4 76 216 -76 2 1573 789 128 104 0 chr4 129577846 129577971 -26052149 + B1_Mus1 SINE Alu 10 147 -1 2 1573 262 268 0 0 chr4 129578071 129578127 -26051993 + CT-rich Low_complexity Low_complexity 3 58 0 2 1573 180 0 0 0 chr4 129578225 129578245 -26051875 + (CCA)n Simple_repeat Simple_repeat 2 21 0 2 1573 923 119 0 7 chr4 129578245 129578380 -26051740 - B1_Mur3 SINE Alu -12 137 4 2 1573 904 252 48 0 chr4 129578386 129578596 -26051524 - B4 SINE B4 -68 224 5 2 1573 286 352 19 0 chr4 129578598 129578703 -26051417 - MTEb LTR MaLR -223 136 30 2 1573 361 333 126 29 chr4 129578704 129578846 -26051274 + L1MC5 LINE L1 6964 7110 -851 2 1573 207 0 0 0 chr4 129578846 129578869 -26051251 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1573 361 288 71 52 chr4 129578869 129578997 -26051123 + L1MC5 LINE L1 7111 7257 -785 2 1573 333 315 62 10 chr4 129579097 129579227 -26050893 - LTR16C LTR ERVL -14 524 354 2 1573 1029 270 16 12 chr4 129579242 129579497 -26050623 + B4A SINE B4 37 292 0 2 1573 224 127 0 83 chr4 129579504 129579528 -26050592 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1573 288 0 0 0 chr4 129579528 129579560 -26050560 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1573 224 127 0 83 chr4 129579560 129579595 -26050525 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1573 282 357 78 0 chr4 129579635 129579764 -26050356 - LTR16C LTR ERVL -188 350 212 2 1573 644 190 11 22 chr4 129580470 129580748 -26049372 + (TG)n Simple_repeat Simple_repeat 1 274 0 2 1573 3996 226 54 8 chr4 129581506 129582657 -26047463 - RMER1A Other Other -4 1026 47 2 1573 440 247 34 0 chr4 129582750 129582839 -26047281 - PB1D10 SINE Alu -8 109 18 2 1573 302 281 127 17 chr4 129583668 129583825 -26046295 - LTR81A LTR ERV1? -1198 195 20 2 1573 354 98 0 0 chr4 129584217 129584268 -26045852 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1573 228 216 59 0 chr4 129584269 129584320 -26045800 - B4A SINE B4 -20 272 219 2 1573 186 43 0 0 chr4 129584336 129584359 -26045761 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1573 1115 68 61 0 chr4 129584359 129584507 -26045613 - B2_Mm2 SINE B2 -38 157 1 2 1573 30 0 0 0 chr4 129584516 129584546 -26045574 + AT_rich Low_complexity Low_complexity 1 30 0 2 1573 504 349 0 18 chr4 129584553 129584722 -26045398 - B4A SINE B4 -125 167 2 2 1573 612 216 0 0 chr4 129584757 129584868 -26045252 - B1_Mur1 SINE Alu -6 143 33 2 1573 602 211 20 66 chr4 129584890 129585042 -26045078 + B1F SINE Alu 5 149 0 2 1573 1613 247 23 42 chr4 129585117 129585429 -26044691 - MTD LTR MaLR 0 419 113 2 1573 1118 90 7 0 chr4 129585429 129585567 -26044553 + B1_Mus2 SINE Alu 1 139 -8 2 1573 288 70 0 0 chr4 129585567 129585610 -26044510 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 2 1573 1613 247 23 42 chr4 129585615 129585729 -26044391 - MTD LTR MaLR -307 112 1 2 1573 430 253 133 0 chr4 129585948 129586106 -26044014 + L1MB3 LINE L1 5989 6167 -16 2 1573 424 315 119 0 chr4 129586183 129586434 -26043686 - L1M5 LINE L1 -1488 4658 4378 2 1573 891 0 0 0 chr4 129587220 129587319 -26042801 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2 1573 502 191 302 31 chr4 129587330 129587492 -26042628 - ID_B1 SINE B4 -17 207 2 2 1573 388 212 0 110 chr4 129587662 129587789 -26042331 + MT2B LTR ERVL 152 264 -337 2 1573 720 197 8 0 chr4 129587677 129587804 -26042316 + B1_Mur2 SINE Alu 2 129 -20 2 1573 197 65 32 0 chr4 129587805 129587836 -26042284 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 1573 187 243 243 0 chr4 129587859 129587970 -26042150 - L2b LINE L2 -261 3114 2977 2 1573 737 270 70 70 chr4 129588234 129588505 -26041615 + B4 SINE B4 2 272 -20 2 1573 1281 57 4 0 chr4 129588521 129588771 -26041349 + (CA)n Simple_repeat Simple_repeat 1 251 0 2 1573 267 247 0 56 chr4 129589068 129589158 -26040962 - L1M7 LINE L1 -4629 1589 1505 2 1573 813 194 0 0 chr4 129589159 129589339 -26040781 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1573 678 225 0 0 chr4 129589355 129589533 -26040587 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1573 327 93 0 0 chr4 129589546 129589589 -26040531 + HAL1-3A_ME LINE L1 1976 2018 -840 2 1573 379 245 133 44 chr4 129590167 129590325 -26039795 - MLT1A1 LTR MaLR -2 406 235 2 1573 2198 152 18 26 chr4 129590557 129591104 -26039016 - RLTR28 LTR ERVL -12 512 1 2 1573 222 264 0 0 chr4 129591356 129591409 -26038711 - ID2 SINE ID -16 67 15 2 1573 419 240 153 5 chr4 129591697 129591906 -26038214 - L1M7 LINE L1 -5459 759 520 2 1573 249 108 0 0 chr4 129592005 129592042 -26038078 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1573 526 238 81 13 chr4 129592043 129592192 -26037928 - B3A SINE B2 -32 166 8 2 1573 224 280 0 0 chr4 129592241 129592291 -26037829 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1573 180 217 0 0 chr4 129592328 129592374 -26037746 + CT-rich Low_complexity Low_complexity 1 46 0 2 1573 498 305 11 63 chr4 129592374 129592419 -26037701 - B4A SINE B4 -44 248 212 2 1573 2403 25 11 0 chr4 129592419 129592697 -26037423 - L1Md_F3 LINE L1 0 6584 6304 2 1573 498 305 11 63 chr4 129592697 129592826 -26037294 - B4A SINE B4 -81 211 83 2 1573 297 0 0 0 chr4 129592865 129592898 -26037222 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1573 477 0 0 0 chr4 129592898 129592950 -26037170 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1573 544 277 15 51 chr4 129592953 129593090 -26037030 - RSINE1 SINE B4 -33 132 1 2 1573 630 205 84 30 chr4 129593096 129593227 -26036893 - B1F SINE Alu -7 142 5 2 1573 971 84 0 14 chr4 129593836 129593980 -26036140 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 2 1573 204 40 0 0 chr4 129593980 129594004 -26036116 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 2 1573 1308 79 0 0 chr4 129594008 129594186 -26035934 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 1573 347 246 57 0 chr4 129594198 129594283 -26035837 - PB1D10 SINE Alu -9 118 30 2 1573 702 215 14 27 chr4 129595259 129595407 -26034713 - B1_Mus2 SINE Alu 0 147 2 2 1573 466 179 71 0 chr4 129595522 129595606 -26034514 - B1_Mm SINE Alu -50 97 8 3 1573 233 237 188 31 chr4 129595523 129595619 -26034501 - B4 SINE B4 -105 187 77 3 1573 214 237 16 33 chr4 129595626 129595687 -26034433 + CT-rich Low_complexity Low_complexity 5 64 0 3 1573 814 242 56 15 chr4 129595687 129595884 -26034236 - ID_B1 SINE B4 -18 206 2 3 1573 282 320 98 54 chr4 129596084 129596289 -26033831 - MIR SINE MIR -34 228 15 3 1573 264 263 71 57 chr4 129596324 129596458 -26033662 + B1_Mur4 SINE Alu 6 141 -9 3 1573 266 0 0 29 chr4 129596458 129596493 -26033627 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 3 1573 189 353 45 34 chr4 129596690 129596778 -26033342 - L2c LINE L2 -35 3352 3264 3 1573 615 226 116 30 chr4 129596855 129597019 -26033101 + B3 SINE B2 39 216 0 3 1573 243 241 37 0 chr4 129597154 129597208 -26032912 + MLT1N2 LTR MaLR 122 177 -385 3 1573 414 57 0 0 chr4 129597595 129597648 -26032472 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1573 228 227 47 14 chr4 129598584 129598677 -26031443 - MIR SINE MIR -90 118 22 3 1573 208 295 177 70 chr4 129598929 129599144 -26030976 - MIRm SINE MIR -17 259 22 3 1573 1150 238 29 0 chr4 129599451 129599724 -26030396 + B4A SINE B4 2 282 -10 3 1573 190 162 38 6 chr4 129599971 129600023 -26030097 - MIR SINE MIR -112 156 101 3 1573 279 127 15 31 chr4 129600210 129600265 -26029855 + CT-rich Low_complexity Low_complexity 10 64 0 3 1573 1380 76 5 26 chr4 129600265 129600455 -26029665 - B2_Mm1t SINE B2 -7 186 1 3 1573 482 276 199 0 chr4 129600464 129600645 -26029475 - ID_B1 SINE B4 -6 218 2 3 1573 966 75 1 1 chr4 129600772 129600911 -26029209 - B2_Mm2 SINE B2 -54 139 1 3 1573 835 291 9 14 chr4 129600917 129601140 -26028980 - ID_B1 SINE B4 -2 222 1 3 1573 370 288 137 50 chr4 129601141 129601463 -26028657 + L1MC3 LINE L1 6926 7275 -510 3 1573 1056 171 137 74 chr4 129602093 129602364 -26027756 + ORR1C2 LTR MaLR 97 384 0 3 1573 516 110 0 0 chr4 129602588 129602661 -26027459 + B1_Mur4 SINE Alu 1 73 -77 3 1573 450 94 0 0 chr4 129602757 129602821 -26027299 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1573 781 289 9 69 chr4 129603012 129603228 -26026892 + B3A SINE B2 14 216 0 3 1573 735 177 108 0 chr4 129603306 129603436 -26026684 - B1_Mur4 SINE Alu -5 145 2 3 1573 601 204 17 34 chr4 129603485 129603602 -26026518 + B1_Mur4 SINE Alu 25 139 -11 3 1573 243 0 0 0 chr4 129603602 129603629 -26026491 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1573 673 261 90 0 chr4 129604487 129604675 -26025445 + ID_B1 SINE B4 1 205 -19 3 1573 623 67 11 0 chr4 129604947 129605036 -26025084 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1573 405 0 0 0 chr4 129605043 129605088 -26025032 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1573 1107 71 0 7 chr4 129605092 129605234 -26024886 - B1_Mm SINE Alu -2 145 5 3 1573 24 0 0 0 chr4 129605243 129605267 -26024853 + AT_rich Low_complexity Low_complexity 1 24 0 3 1573 32 81 0 0 chr4 129605336 129605410 -26024710 + AT_rich Low_complexity Low_complexity 1 74 0 3 1573 388 208 0 27 chr4 129607557 129607631 -26022489 - ID4_ SINE ID -11 72 1 3 1573 441 246 42 28 chr4 129607633 129607775 -26022345 - B1F1 SINE Alu -5 144 1 3 1573 209 242 49 58 chr4 129607862 129607980 -26022140 + MIRc SINE MIR 36 149 -119 3 1573 754 215 0 46 chr4 129607980 129608131 -26021989 + B1_Mur1 SINE Alu 1 144 -5 3 1573 199 298 71 71 chr4 129608131 129608196 -26021924 + MIRb SINE MIR 150 222 -46 3 1573 943 35 0 0 chr4 129608249 129608365 -26021755 - B1_Mm SINE Alu 0 147 32 3 1573 339 241 196 10 chr4 129608388 129608521 -26021599 - MIRb SINE MIR -88 180 14 3 1573 298 294 71 18 chr4 129608790 129608944 -26021176 - MIRc SINE MIR -48 220 63 3 1573 466 326 22 0 chr4 129609035 129609170 -26020950 - ID_B1 SINE B4 -5 219 82 3 1573 866 211 20 40 chr4 129609197 129609399 -26020721 - B3A SINE B2 0 198 1 3 1573 945 65 84 28 chr4 129609456 129609598 -26020522 + B1_Mur4 SINE Alu 1 150 0 3 1573 247 271 17 17 chr4 129609821 129609881 -26020239 + ID SINE ID 3 62 -162 3 1573 3105 122 155 13 chr4 129609900 129610455 -26019665 - RMER19A LTR ERVK -103 634 1 3 1573 609 255 161 33 chr4 129610462 129610705 -26019415 + B4A SINE B4 2 275 -17 3 1573 531 0 0 0 chr4 129610716 129610775 -26019345 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1573 270 0 0 0 chr4 129610775 129610804 -26019316 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1573 438 213 0 0 chr4 129612271 129612346 -26017774 + ID4_ SINE ID 5 79 -4 3 1573 624 311 38 0 chr4 129612399 129612608 -26017512 - ID_B1 SINE B4 -7 217 1 3 1573 314 380 52 12 chr4 129612649 129612822 -26017298 - MIRb SINE MIR -56 212 33 3 1573 364 314 7 41 chr4 129613238 129613384 -26016736 - MIR SINE MIR -51 211 71 3 1573 319 329 48 99 chr4 129613398 129613853 -26016267 - L1MEd LINE L1 -443 5797 5366 3 1573 414 173 19 9 chr4 129613869 129613974 -26016146 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 1573 910 184 15 64 chr4 129614040 129614243 -26015877 - B3A SINE B2 0 198 6 3 1573 317 141 25 37 chr4 129614297 129614378 -26015742 - L1MB4 LINE L1 -1 6179 6100 3 1573 324 0 0 0 chr4 129614378 129614414 -26015706 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1573 220 216 19 19 chr4 129614502 129614554 -26015566 + CT-rich Low_complexity Low_complexity 3 54 0 3 1573 364 269 95 57 chr4 129614554 129614712 -26015408 - MT2B LTR ERVL -263 338 175 3 1573 789 186 14 0 chr4 129614578 129614718 -26015402 - B1_Mur3 SINE Alu -3 146 5 3 1573 490 239 211 38 chr4 129614812 129615021 -26015099 - MER67A LTR ERV1 -298 245 1 3 1573 549 0 0 0 chr4 129615207 129615268 -26014852 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1573 420 242 42 0 chr4 129615271 129615366 -26014754 - B1_Mur2 SINE Alu -50 99 1 3 1573 275 262 38 19 chr4 129615370 129615475 -26014645 - L1MC5 LINE L1 -365 7596 7490 3 1573 333 0 0 0 chr4 129615582 129615619 -26014501 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1573 699 200 22 0 chr4 129615619 129615754 -26014366 - B1_Mus1 SINE Alu -9 139 2 3 1573 397 307 188 27 chr4 129615772 129616033 -26014087 - MTEa LTR MaLR -22 357 55 3 1573 370 242 57 57 chr4 129616215 129616373 -26013747 - L1MEd LINE L1 -1737 4409 4252 3 1573 297 0 0 0 chr4 129616455 129616488 -26013632 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1573 510 283 132 66 chr4 129616593 129616896 -26013224 - L1MEd LINE L1 -2129 4017 3695 3 1573 207 0 0 0 chr4 129616990 129617013 -26013107 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1573 1071 194 19 9 chr4 129617501 129617714 -26012406 - B3 SINE B2 0 216 2 3 1573 180 0 0 0 chr4 129617722 129617742 -26012378 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1573 1222 48 0 7 chr4 129617902 129618050 -26012070 + B1_Mus2 SINE Alu 1 147 0 3 1573 267 31 0 0 chr4 129618050 129618082 -26012038 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1573 361 284 0 11 chr4 129618133 129618222 -26011898 + RSINE1 SINE B4 2 89 -76 3 1573 1014 30 70 56 chr4 129618352 129618495 -26011625 - B1_Mus2 SINE Alu -2 145 1 3 1573 1412 68 0 0 chr4 129618503 129618519 -26011601 - B2_Mm1t SINE B2 -16 177 162 3 1573 459 0 0 0 chr4 129618519 129618570 -26011550 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 3 1573 1412 68 0 0 chr4 129618570 129618729 -26011391 - B2_Mm1t SINE B2 -32 161 3 3 1573 422 220 72 16 chr4 129618922 129619051 -26011069 - ORR1D1 LTR MaLR -261 133 3 3 1573 657 260 47 6 chr4 129619053 129619223 -26010897 + B3 SINE B2 12 188 -28 3 1573 463 300 119 22 chr4 129619246 129619515 -26010605 - L1MEd LINE L1 -3400 2746 2452 3 1573 415 245 82 0 chr4 129619872 129619970 -26010150 - PB1D10 SINE Alu 0 117 12 3 1573 480 339 80 34 chr4 129620044 129620368 -26009752 - L1MEd LINE L1 -4184 1982 1644 3 1573 255 333 73 30 chr4 129620458 129620622 -26009498 - L1MEd LINE L1 -4556 1610 1440 3 1573 221 308 164 16 chr4 129620666 129620788 -26009332 + MIR SINE MIR 16 155 -107 3 1573 850 221 5 93 chr4 129620893 129621108 -26009012 - B3A SINE B2 -2 196 1 3 1573 1002 167 0 3 chr4 129621139 129621438 -26008682 + (TG)n Simple_repeat Simple_repeat 1 298 0 3 1573 588 234 120 30 chr4 129621438 129621605 -26008515 - B3A SINE B2 -15 183 2 3 1573 227 314 56 41 chr4 129621605 129621801 -26008319 - L1MEd LINE L1 -4892 1350 1152 3 1573 534 206 32 52 chr4 129621866 129622020 -26008100 - L1MEd LINE L1 -5069 1067 917 3 1573 232 299 65 9 chr4 129622364 129622472 -26007648 - L1MC4a LINE L1 -1891 5991 5878 3 1573 265 371 83 0 chr4 129622730 129622862 -26007258 + MIRb SINE MIR 27 169 -99 3 1573 280 271 200 0 chr4 129623881 129624021 -26006099 - L2c LINE L2 -11 3376 3197 3 1573 193 283 162 0 chr4 129624269 129624368 -26005752 - MIRm SINE MIR -145 131 17 3 1573 522 0 0 0 chr4 129624581 129624639 -26005481 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1573 3435 25 5 8 chr4 129625474 129625871 -26004249 + MTA_Mm LTR MaLR 1 396 0 3 1573 984 117 43 32 chr4 129627017 129627202 -26002918 + B2_Mm2 SINE B2 6 192 -3 3 1573 1657 136 36 33 chr4 129627215 129627520 -26002600 + Lx4B LINE L1 6749 7054 -4 3 1573 227 268 0 73 chr4 129627595 129627760 -26002360 + (GCTG)n Simple_repeat Simple_repeat 2 154 0 3 1573 440 307 266 0 chr4 129627802 129628020 -26002100 + B4 SINE B4 13 288 -4 3 1573 815 190 207 0 chr4 129628224 129628398 -26001722 + B3 SINE B2 2 211 -5 3 1573 333 0 0 0 chr4 129628409 129628446 -26001674 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1573 188 279 82 0 chr4 129628569 129628630 -26001490 - MIRm SINE MIR -118 158 93 3 1573 210 274 0 0 chr4 129629714 129629765 -26000355 - L2b LINE L2 -1 3374 3324 3 1573 212 151 57 0 chr4 129629948 129630001 -26000119 + GA-rich Low_complexity Low_complexity 6 61 0 3 1574 23 33 0 0 chr4 129630592 129630622 -25999498 + AT_rich Low_complexity Low_complexity 1 30 0 4 1574 1144 109 0 62 chr4 129632344 129632539 -25997581 + URR1A DNA MER1_type 44 226 0 4 1574 432 0 0 0 chr4 129633521 129633569 -25996551 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1574 531 0 0 0 chr4 129634531 129634590 -25995530 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 1574 593 282 8 0 chr4 129634597 129634728 -25995392 + B1_Mur1 SINE Alu 1 132 -17 4 1574 483 182 0 33 chr4 129634730 129634811 -25995309 + MT2B LTR ERVL 1 81 -452 4 1574 1188 17 0 48 chr4 129634811 129634999 -25995121 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1574 876 7 0 73 chr4 129635011 129635176 -25994944 + (TTTC)n Simple_repeat Simple_repeat 4 156 0 4 1574 1173 83 0 0 chr4 129635176 129635356 -25994764 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1574 180 0 0 0 chr4 129635356 129635376 -25994744 + (TTTTTG)n Simple_repeat Simple_repeat 6 25 0 4 1574 1173 62 7 0 chr4 129635376 129635522 -25994598 - B1_Mus2 SINE Alu 0 147 1 4 1574 979 215 98 30 chr4 129635563 129635851 -25994269 + MT2B LTR ERVL 92 560 -41 4 1574 843 73 0 0 chr4 129635851 129635975 -25994145 + (TC)n Simple_repeat Simple_repeat 1 124 0 4 1574 252 0 0 0 chr4 129635975 129636002 -25994118 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1574 979 226 127 43 chr4 129636002 129636036 -25994084 + MT2B LTR ERVL 561 600 -1 4 1574 410 317 65 42 chr4 129636190 129636358 -25993762 - B4A SINE B4 -10 282 111 4 1574 258 312 78 0 chr4 129638178 129638306 -25991814 + MIRb SINE MIR 52 189 -79 4 1574 188 349 21 79 chr4 129638640 129638780 -25991340 + MIR3 SINE MIR 1 132 -76 4 1574 222 118 0 0 chr4 129640361 129640395 -25989725 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1574 319 149 39 51 chr4 129640686 129640717 -25989403 + B1F1 SINE Alu 30 63 -86 4 1574 2024 119 219 6 chr4 129640717 129641064 -25989056 - MTC LTR MaLR 0 421 1 4 1574 319 179 45 46 chr4 129641064 129641128 -25988992 + B1F1 SINE Alu 64 128 -22 4 1574 356 247 216 63 chr4 129641145 129641335 -25988785 + B4 SINE B4 2 220 -72 4 1574 540 45 0 0 chr4 129641407 129641474 -25988646 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1574 447 137 0 0 chr4 129642258 129642331 -25987789 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 4 1574 513 215 111 0 chr4 129642613 129642748 -25987372 - MIR SINE MIR -45 217 68 4 1574 276 390 49 15 chr4 129642902 129643105 -25987015 - MER115 DNA Tip100 -446 247 38 4 1574 1218 61 0 13 chr4 129643160 129643309 -25986811 + B1_Mus1 SINE Alu 1 147 -1 4 1574 1349 159 22 9 chr4 129643916 129644138 -25985982 - URR1B DNA MER1_type 0 225 1 4 1574 666 0 0 0 chr4 129644270 129644344 -25985776 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1574 234 0 0 0 chr4 129644344 129644369 -25985751 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1574 216 86 0 0 chr4 129645483 129645518 -25984602 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1574 433 241 0 53 chr4 129646198 129646312 -25983808 - PB1 SINE Alu -2 125 18 4 1574 270 0 0 0 chr4 129646326 129646356 -25983764 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1574 569 211 254 12 chr4 129646400 129646573 -25983547 - B3 SINE B2 0 216 2 4 1574 1063 78 35 0 chr4 129646619 129646761 -25983359 - B1_Mus2 SINE Alu 0 147 1 4 1574 482 297 22 7 chr4 129646767 129646906 -25983214 - B4A SINE B4 -149 143 3 4 1574 636 289 13 60 chr4 129647136 129647368 -25982752 - L1ME4a LINE L1 -270 5854 5634 4 1574 246 323 11 21 chr4 129647519 129647614 -25982506 - L1ME4a LINE L1 -648 5476 5383 4 1574 243 0 0 0 chr4 129648160 129648187 -25981933 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1574 333 0 0 0 chr4 129648771 129648808 -25981312 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 4 1574 373 184 0 94 chr4 129648826 129648922 -25981198 - B4A SINE B4 -205 87 1 4 1574 467 291 75 66 chr4 129649712 129649925 -25980195 + B4 SINE B4 1 215 -77 4 1574 320 232 70 10 chr4 129649973 129650073 -25980047 + (CATG)n Simple_repeat Simple_repeat 3 108 0 4 1574 191 256 0 0 chr4 129650947 129650990 -25979130 - MIRm SINE MIR -118 158 116 4 1574 289 291 13 0 chr4 129651445 129651524 -25978596 + MER63D DNA AcHobo 305 384 -677 4 1574 522 0 0 0 chr4 129651869 129651927 -25978193 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1574 420 293 152 0 chr4 129652235 129652433 -25977687 + L2a LINE L2 3020 3247 -179 4 1574 729 177 35 14 chr4 129652487 129652630 -25977490 - B1_Mur1 SINE Alu -3 146 1 4 1574 657 359 33 4 chr4 129652747 129653018 -25977102 - B4A SINE B4 -2 290 12 4 1574 333 0 0 0 chr4 129653153 129653190 -25976930 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1574 915 104 0 0 chr4 129653261 129653395 -25976725 - URR1A DNA MER1_type -3 223 90 4 1574 243 0 0 0 chr4 129653763 129653790 -25976330 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1574 666 0 0 0 chr4 129655380 129655454 -25974666 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1574 204 341 47 16 chr4 129655729 129655857 -25974263 - MIRb SINE MIR -22 246 115 4 1574 434 18 0 18 chr4 129656497 129656553 -25973567 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1574 189 0 0 0 chr4 129656553 129656573 -25973547 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1574 306 0 0 0 chr4 129657186 129657220 -25972900 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1574 228 329 15 75 chr4 129657492 129657642 -25972478 - MIRc SINE MIR -81 187 45 4 1574 411 322 85 39 chr4 129657745 129658026 -25972094 - L2a LINE L2 0 3426 3133 4 1574 221 325 0 24 chr4 129659381 129659466 -25970654 - MIR SINE MIR -64 144 62 4 1574 222 118 0 0 chr4 129659807 129659841 -25970279 + (CAGG)n Simple_repeat Simple_repeat 3 36 0 4 1574 218 194 10 97 chr4 129662007 129662110 -25968010 + C-rich Low_complexity Low_complexity 5 98 0 4 1574 251 253 24 37 chr4 129662168 129662332 -25967788 + (CGG)n Simple_repeat Simple_repeat 1 162 0 4 1574 36 0 0 0 chr4 129662334 129662370 -25967750 + GC_rich Low_complexity Low_complexity 1 36 0 4 1574 270 314 47 9 chr4 129664332 129664438 -25965682 + MIRb SINE MIR 112 221 -47 4 1574 25 0 0 0 chr4 129665232 129665257 -25964863 + GC_rich Low_complexity Low_complexity 1 25 0 4 1574 765 0 0 0 chr4 129667050 129667135 -25962985 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 4 1574 211 108 81 0 chr4 129667919 129667956 -25962164 + G-rich Low_complexity Low_complexity 5 44 0 4 1574 263 285 121 78 chr4 129668456 129668597 -25961523 - MIRc SINE MIR -84 184 38 4 1574 229 336 10 80 chr4 129669022 129669214 -25960906 - MIRm SINE MIR -50 218 47 4 1574 342 0 0 0 chr4 129674132 129674170 -25955950 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 4 1574 551 132 160 0 chr4 129674170 129674276 -25955844 - B1_Mur2 SINE Alu -22 127 5 4 1574 996 91 0 33 chr4 129674290 129674472 -25955648 + (TTC)n Simple_repeat Simple_repeat 3 178 0 4 1574 682 262 77 62 chr4 129674487 129674682 -25955438 - ID_B1 SINE B4 -21 203 6 4 1574 297 51 0 0 chr4 129674689 129674728 -25955392 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1574 611 208 48 0 chr4 129674730 129674855 -25955265 - ID_B1 SINE B4 -9 215 85 4 1574 444 284 202 5 chr4 129675103 129675301 -25954819 - MER113 DNA MER1_type -83 438 202 4 1574 180 212 0 0 chr4 129676441 129676474 -25953646 - L2b LINE L2 -218 3157 3125 4 1574 317 329 54 16 chr4 129676597 129676770 -25953350 - MIRc SINE MIR -79 197 25 4 1574 660 273 178 21 chr4 129677224 129677460 -25952660 + B4 SINE B4 2 274 -18 4 1574 189 121 0 0 chr4 129677510 129677543 -25952577 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1574 234 0 0 0 chr4 129678213 129678239 -25951881 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1574 1118 209 24 0 chr4 129678302 129678512 -25951608 + B3 SINE B2 1 215 -1 4 1574 194 376 66 114 chr4 129678810 129679083 -25951037 - L2 LINE L2 -1258 2161 1902 4 1574 752 219 137 39 chr4 129679688 129679892 -25950228 - MTD LTR MaLR 0 419 196 4 1574 841 168 0 11 chr4 129679892 129680053 -25950067 + C-rich Low_complexity Low_complexity 20 179 0 4 1574 459 0 0 0 chr4 129680053 129680104 -25950016 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1574 841 168 0 11 chr4 129680104 129680123 -25949997 + C-rich Low_complexity Low_complexity 1 19 0 4 1574 878 189 0 0 chr4 129680124 129680272 -25949848 - B1_Mur2 SINE Alu -1 148 1 4 1574 864 0 0 0 chr4 129680279 129680375 -25949745 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 4 1574 693 61 30 0 chr4 129680375 129680474 -25949646 - B1_Mm SINE Alu -3 144 43 4 1574 752 182 145 27 chr4 129680467 129680653 -25949467 - MTD LTR MaLR -211 210 3 4 1574 182 371 62 0 chr4 129680760 129680857 -25949263 - MIRb SINE MIR -88 180 78 4 1574 225 283 131 9 chr4 129681498 129681605 -25948515 - ORR1E LTR MaLR -217 142 23 4 1574 185 328 219 22 chr4 129681866 129682003 -25948117 + MIRb SINE MIR 87 250 -18 4 1574 249 172 0 0 chr4 129682075 129682124 -25947996 + MIRc SINE MIR 110 158 -50 4 1574 535 151 74 19 chr4 129685931 129686039 -25944081 + B1_Mur2 SINE Alu 36 149 0 4 1574 285 369 0 0 chr4 129686061 129686164 -25943956 + L2c LINE L2 3271 3373 -14 4 1574 721 301 50 21 chr4 129687747 129687774 -25942346 + B4 SINE B4 42 67 -225 4 1574 908 156 169 101 chr4 129687774 129687863 -25942257 - URR1B DNA MER1_type 0 225 150 4 1574 1669 37 0 0 chr4 129687863 129688054 -25942066 - B2_Mm1a SINE B2 -1 192 2 4 1574 908 156 169 101 chr4 129688054 129688171 -25941949 - URR1B DNA MER1_type -76 149 5 4 1574 721 301 50 21 chr4 129688171 129688384 -25941736 + B4 SINE B4 68 288 -4 4 1574 405 102 0 0 chr4 129689862 129689921 -25940199 + (GGA)n Simple_repeat Simple_repeat 1 59 0 4 1574 692 185 89 37 chr4 129689945 129690136 -25939984 - B3 SINE B2 -4 212 12 4 1574 234 0 0 0 chr4 129690228 129690254 -25939866 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1574 235 298 65 78 chr4 129691189 129691342 -25938778 + MIR3 SINE MIR 20 170 -38 4 1574 371 322 7 47 chr4 129693120 129693270 -25936850 + MIRb SINE MIR 125 268 0 5 1574 201 275 42 42 chr4 129693871 129693943 -25936177 + MER5B DNA MER1_type 74 145 -33 5 1574 187 293 102 39 chr4 129694931 129695059 -25935061 + MIR3 SINE MIR 37 172 -36 5 1574 180 0 0 0 chr4 129695369 129695389 -25934731 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1574 184 352 64 37 chr4 129695391 129695500 -25934620 + MIR SINE MIR 108 219 -43 5 1574 202 279 73 56 chr4 129696862 129696977 -25933143 + MIRb SINE MIR 27 155 -113 5 1574 290 345 26 0 chr4 129697293 129697406 -25932714 + Charlie22a DNA MER1_type 77 192 -299 5 1574 205 312 51 135 chr4 129697760 129697975 -25932145 + MIR3 SINE MIR 3 199 -9 5 1574 191 136 45 0 chr4 129698642 129698686 -25931434 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 5 1574 223 345 22 65 chr4 129700195 129700389 -25929731 - MIRb SINE MIR -47 221 26 5 1574 345 317 6 0 chr4 129701029 129701134 -25928986 - MIR3 SINE MIR -54 154 52 5 1574 255 61 0 0 chr4 129701147 129701180 -25928940 + (GGA)n Simple_repeat Simple_repeat 1 33 0 5 1574 478 182 28 50 chr4 129702585 129702722 -25927398 + B1_Mur4 SINE Alu 13 150 0 5 1574 227 214 24 0 chr4 129702827 129702869 -25927251 - ID4_ SINE ID -16 67 25 5 1574 571 156 205 0 chr4 129703204 129703326 -25926794 + B1F SINE Alu 1 147 -2 5 1574 497 264 0 85 chr4 129703386 129703527 -25926593 - ID_B1 SINE B4 -5 219 91 5 1574 1308 79 0 0 chr4 129703594 129703772 -25926348 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 5 1574 315 130 37 0 chr4 129703778 129703832 -25926288 - PB1D10 SINE Alu -16 101 46 5 1574 21 0 0 0 chr4 129704582 129704603 -25925517 + GC_rich Low_complexity Low_complexity 1 21 0 5 1574 233 315 65 0 chr4 129704897 129704989 -25925131 - L2 LINE L2 -957 2462 2365 5 1574 258 156 0 0 chr4 129706090 129706135 -25923985 + GA-rich Low_complexity Low_complexity 3 47 0 5 1574 722 217 122 6 chr4 129706266 129706447 -25923673 - ID_B1 SINE B4 -22 202 1 5 1574 486 191 8 83 chr4 129707274 129707394 -25922726 - PB1D10 SINE Alu -2 115 5 5 1574 5174 200 18 23 chr4 129707408 129707568 -25922552 + Lx7 LINE L1 5436 5604 -2092 5 1574 1817 122 251 6 chr4 129707568 129707922 -25922198 + BGLII_B LTR ERVK 1 441 0 5 1574 5174 252 39 20 chr4 129707922 129708720 -25921400 + Lx7 LINE L1 5605 6405 -1291 5 1574 426 39 0 0 chr4 129708720 129708772 -25921348 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1574 5174 252 39 20 chr4 129708772 129709384 -25920736 + Lx7 LINE L1 6406 7043 -653 5 1574 455 167 11 0 chr4 129709402 129709492 -25920628 + Lx7 LINE L1 7230 7320 -376 5 1574 237 185 73 12 chr4 129709541 129709623 -25920497 + T-rich Low_complexity Low_complexity 2 88 0 5 1574 477 0 0 0 chr4 129709704 129709757 -25920363 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1574 639 230 8 0 chr4 129709757 129709883 -25920237 - B3 SINE B2 -51 165 39 5 1574 314 0 0 161 chr4 129709921 129710083 -25920037 + (CAGAG)n Simple_repeat Simple_repeat 5 140 0 5 1574 595 183 0 0 chr4 129710086 129710190 -25919930 + B1_Mus2 SINE Alu 42 145 -2 5 1574 604 284 26 6 chr4 129710375 129710531 -25919589 - RSINE1 SINE B4 -6 159 1 5 1574 240 363 67 26 chr4 129710533 129710728 -25919392 + L2c LINE L2 3185 3387 0 5 1574 243 0 0 0 chr4 129711323 129711350 -25918770 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1574 309 362 49 12 chr4 129711474 129711739 -25918381 - L2c LINE L2 -191 3184 2922 5 1574 234 311 49 0 chr4 129711881 129711942 -25918178 - L2b LINE L2 -13 3362 3299 5 1574 300 355 97 35 chr4 129712017 129712245 -25917875 - MamGypLTR1a LTR Gypsy -39 745 504 5 1574 2309 47 0 0 chr4 129712255 129712529 -25917591 - L1_Mus1 LINE L1 0 6567 6294 5 1574 657 274 67 82 chr4 129712654 129712936 -25917184 - MamGypLTR1a LTR Gypsy -502 282 5 5 1574 226 273 162 1 chr4 129714943 129715039 -25915081 - MIR SINE MIR -112 156 48 5 1574 468 231 53 15 chr4 129715208 129715340 -25914780 + RSINE1 SINE B4 2 138 -27 5 1574 295 337 27 38 chr4 129715340 129715393 -25914727 + B2_Mm2 SINE B2 1 183 -12 5 1574 1327 87 16 52 chr4 129715685 129715879 -25914241 + B2_Mm2 SINE B2 1 187 -8 5 1574 227 302 185 64 chr4 129716348 129716484 -25913636 - MIRb SINE MIR -8 260 104 5 1574 1054 160 118 20 chr4 129716484 129716688 -25913432 + URR1A DNA MER1_type 3 226 0 5 1574 227 302 185 64 chr4 129716688 129716724 -25913396 - MIRb SINE MIR -165 103 67 5 1574 1227 35 7 0 chr4 129717661 129717806 -25912314 - B1_Mus1 SINE Alu 0 148 3 5 1574 251 28 28 0 chr4 129717823 129717859 -25912261 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1574 365 247 43 11 chr4 129717861 129717955 -25912165 - PB1D10 SINE Alu -16 101 5 5 1574 185 300 141 8 chr4 129717978 129718099 -25912021 - MIRb SINE MIR -133 143 7 5 1574 408 301 74 10 chr4 129718454 129718654 -25911466 + MIR SINE MIR 49 255 -7 5 1574 498 289 71 43 chr4 129718786 129718996 -25911124 - MER20 DNA MER1_type -1 218 3 5 1574 218 246 0 0 chr4 129719613 129719670 -25910450 + PB1D10 SINE Alu 32 88 -29 5 1574 189 74 0 0 chr4 129719756 129719783 -25910337 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 1574 195 129 0 0 chr4 129720104 129720135 -25909985 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1574 1216 166 53 14 chr4 129720702 129720910 -25909210 - B3 SINE B2 0 216 1 5 1574 262 303 0 26 chr4 129722054 129722132 -25907988 - PB1D10 SINE Alu -40 77 2 5 1574 232 311 0 11 chr4 129722193 129722284 -25907836 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1574 1039 82 13 27 chr4 129722455 129722605 -25907515 - B1_Mur4 SINE Alu 0 150 3 5 1574 185 331 84 28 chr4 129723482 129723625 -25906495 - MIR SINE MIR -25 237 87 5 1574 768 196 28 0 chr4 129723682 129723825 -25906295 + B1_Mur2 SINE Alu 2 148 -1 5 1574 903 122 7 20 chr4 129723920 129724070 -25906050 - B1_Mur4 SINE Alu -1 149 2 5 1574 371 21 0 20 chr4 129724096 129724145 -25905975 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1574 575 257 7 14 chr4 129724236 129724378 -25905742 + RSINE1 SINE B4 3 143 -22 5 1574 23 0 0 0 chr4 129724420 129724443 -25905677 + AT_rich Low_complexity Low_complexity 1 23 0 5 1574 293 227 13 38 chr4 129725378 129725477 -25904643 + MIR SINE MIR 67 173 -103 5 1574 402 21 0 0 chr4 129725815 129725862 -25904258 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1574 512 360 102 11 chr4 129726456 129726720 -25903400 - MamRep38 DNA hAT -7 288 1 5 1574 288 0 0 0 chr4 129727141 129727173 -25902947 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1574 232 296 60 20 chr4 129727308 129727408 -25902712 - MLT1J LTR MaLR -263 249 146 5 1574 274 327 46 18 chr4 129727631 129727740 -25902380 + RMER12 LTR ERVK 740 851 -471 5 1574 1120 185 14 24 chr4 129729647 129729857 -25900263 - B3 SINE B2 -7 209 2 5 1574 694 109 17 0 chr4 129731112 129731231 -25898889 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 1574 459 0 0 0 chr4 129733099 129733150 -25896970 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1574 246 309 20 40 chr4 129734717 129734818 -25895302 - MIRb SINE MIR -90 178 80 5 1574 480 128 0 0 chr4 129735063 129735141 -25894979 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1574 267 79 0 0 chr4 129737211 129737249 -25892871 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 5 1574 186 43 0 0 chr4 129737651 129737674 -25892446 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1574 247 328 96 15 chr4 129737795 129737931 -25892189 + MIRb SINE MIR 41 187 -81 5 1574 511 333 89 8 chr4 129739601 129739837 -25890283 - MIR SINE MIR 0 262 8 5 1574 189 229 0 0 chr4 129740063 129740111 -25890009 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1574 340 185 31 0 chr4 129740140 129740205 -25889915 - ID4_ SINE ID -16 67 1 5 1574 596 179 37 15 chr4 129740236 129740372 -25889748 - B1F1 SINE Alu -5 144 6 5 1574 220 305 99 94 chr4 129740372 129740409 -25889711 - B4 SINE B4 -63 201 48 5 1574 237 362 106 22 chr4 129740417 129740691 -25889429 + L2 LINE L2 2562 2858 -561 5 1574 450 0 0 0 chr4 129740794 129740844 -25889276 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1574 867 260 106 16 chr4 129741062 129741237 -25888883 + B4A SINE B4 16 206 -86 5 1574 978 89 275 12 chr4 129741237 129741408 -25888712 + B3 SINE B2 1 216 0 5 1574 867 260 106 16 chr4 129741408 129741486 -25888634 + B4A SINE B4 207 291 -1 5 1574 689 185 156 19 chr4 129741498 129741652 -25888468 + ID_B1 SINE B4 4 178 -46 5 1574 333 0 0 0 chr4 129741652 129741689 -25888431 + (TTC)n Simple_repeat Simple_repeat 2 38 0 5 1574 411 113 0 0 chr4 129741687 129741749 -25888371 + (TTA)n Simple_repeat Simple_repeat 2 63 0 5 1574 342 237 32 88 chr4 129743169 129743294 -25886826 - MIRc SINE MIR -76 192 75 5 1574 243 164 35 35 chr4 129743528 129743585 -25886535 + C-rich Low_complexity Low_complexity 4 60 0 5 1574 225 250 0 0 chr4 129744557 129744605 -25885515 + G-rich Low_complexity Low_complexity 5 52 0 5 1574 894 93 37 0 chr4 129744938 129745099 -25885021 + (TTC)n Simple_repeat Simple_repeat 1 167 0 5 1574 650 197 0 30 chr4 129745109 129745122 -25884998 - B1_Mur2 SINE Alu 0 149 138 5 1574 1209 73 0 17 chr4 129745122 129745303 -25884817 + (TTC)n Simple_repeat Simple_repeat 3 180 0 5 1574 650 203 0 34 chr4 129745303 129745440 -25884680 - B1_Mur2 SINE Alu -12 137 7 5 1574 495 0 0 0 chr4 129746131 129746186 -25883934 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1574 421 171 0 0 chr4 129746195 129746265 -25883855 - B3A SINE B2 -121 77 8 5 1574 261 0 0 0 chr4 129746286 129746315 -25883805 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1574 465 19 0 0 chr4 129746315 129746368 -25883752 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1574 242 318 0 15 chr4 129746380 129746447 -25883673 + ID2 SINE ID 2 67 -16 5 1574 307 316 18 106 chr4 129746451 129746481 -25883639 + B4 SINE B4 65 79 -213 6 1574 655 192 9 23 chr4 129746481 129746628 -25883492 + B1_Mur2 SINE Alu 2 148 -2 6 1574 636 151 9 9 chr4 129746627 129746734 -25883386 + B1_Mur3 SINE Alu 36 142 -7 6 1574 334 332 73 94 chr4 129746745 129746978 -25883142 + B4A SINE B4 65 292 0 6 1574 381 93 0 0 chr4 129746986 129747040 -25883080 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1574 1134 171 80 0 chr4 129747047 129747246 -25882874 - B3 SINE B2 0 216 2 6 1574 306 314 81 17 chr4 129747393 129747565 -25882555 - L1MA5 LINE L1 -194 6106 5924 6 1574 501 296 0 22 chr4 129747667 129747805 -25882315 - B1F SINE Alu -2 147 13 6 1574 225 384 28 68 chr4 129747669 129747845 -25882275 + MLT1K LTR MaLR 208 376 -219 6 1574 726 309 50 44 chr4 129747953 129748274 -25881846 - Charlie19a DNA Charlie -35 351 29 6 1574 202 222 44 0 chr4 129749119 129749164 -25880956 + MIRc SINE MIR 75 121 -147 6 1574 315 296 72 65 chr4 129749209 129749423 -25880697 + MIRb SINE MIR 3 230 -38 6 1574 1112 234 4 20 chr4 129751097 129751341 -25878779 + B4A SINE B4 2 241 -51 6 1574 494 257 19 32 chr4 129751332 129751489 -25878631 + RSINE1 SINE B4 5 159 -6 6 1574 290 214 0 12 chr4 129751493 129751578 -25878542 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1574 375 240 0 0 chr4 129751585 129751660 -25878460 + B4A SINE B4 218 292 0 6 1574 327 328 40 24 chr4 129751832 129751957 -25878163 - L2b LINE L2 -341 3085 2959 6 1574 616 337 21 0 chr4 129751980 129752173 -25877947 + MIR SINE MIR 46 242 -20 6 1574 266 308 39 0 chr4 129752211 129752289 -25877831 - MIRc SINE MIR -121 147 67 6 1574 309 326 20 107 chr4 129752662 129752858 -25877262 - MIRm SINE MIR -24 252 74 6 1574 797 212 182 16 chr4 129752982 129753169 -25876951 + ID_B1 SINE B4 3 220 -4 6 1574 226 300 0 41 chr4 129753403 129753476 -25876644 - L2c LINE L2 0 3387 3318 6 1574 209 322 117 42 chr4 129753644 129753764 -25876356 - MIR SINE MIR -114 154 26 6 1574 193 359 39 10 chr4 129755597 129755701 -25874419 + MIRb SINE MIR 97 203 -65 6 1574 297 0 0 0 chr4 129756653 129756686 -25873434 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1574 215 266 54 27 chr4 129757235 129757382 -25872738 + C-rich Low_complexity Low_complexity 2 152 0 6 1574 492 299 40 7 chr4 129757501 129757649 -25872471 + L2a LINE L2 3274 3426 0 6 1575 204 40 0 0 chr4 129761856 129761881 -25868239 + (TTC)n Simple_repeat Simple_repeat 3 27 0 6 1575 693 73 0 0 chr4 129762265 129762361 -25867759 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 6 1575 234 0 0 0 chr4 129762362 129762388 -25867732 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 6 1575 281 361 75 22 chr4 129762525 129762944 -25867176 - L2c LINE L2 -223 3164 2727 6 1575 243 0 0 0 chr4 129763122 129763149 -25866971 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 6 1575 240 35 0 0 chr4 129765605 129765634 -25864486 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1575 207 266 60 37 chr4 129765723 129765815 -25864305 - MIR SINE MIR -131 137 33 6 1575 225 367 25 25 chr4 129766498 129766642 -25863478 - MIR3 SINE MIR -29 179 39 6 1575 330 334 155 25 chr4 129768002 129768182 -25861938 - L2c LINE L2 0 3387 3175 6 1575 1281 138 108 0 chr4 129768182 129768385 -25861735 + URR1A DNA MER1_type 1 225 -1 6 1575 330 334 155 25 chr4 129768385 129768572 -25861548 - L2c LINE L2 -213 3174 2972 6 1575 234 299 18 45 chr4 129770086 129770198 -25859922 - LTR83 LTR ERVL -549 231 123 6 1575 348 363 19 34 chr4 129770798 129771036 -25859084 - MIRc SINE MIR -6 262 23 6 1575 582 152 192 0 chr4 129772005 129772130 -25857990 - B1F1 SINE Alu 0 149 1 6 1575 204 216 0 0 chr4 129772135 129772186 -25857934 + CT-rich Low_complexity Low_complexity 1 51 0 6 1575 614 280 129 0 chr4 129772188 129772381 -25857739 + MER2 DNA MER2_type 119 336 -9 6 1575 242 355 91 48 chr4 129773747 129773957 -25856163 + MTB LTR MaLR 155 373 -27 6 1575 392 356 0 0 chr4 129774491 129774668 -25855452 + G-rich Low_complexity Low_complexity 1 177 0 6 1575 204 40 0 0 chr4 129775286 129775311 -25854809 + (TGG)n Simple_repeat Simple_repeat 2 26 0 6 1575 225 0 0 0 chr4 129775314 129775339 -25854781 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1575 198 250 0 0 chr4 129775399 129775443 -25854677 - L4 LINE RTE -204 1825 1782 6 1575 222 242 0 70 chr4 129778524 129778595 -25851525 - MIRm SINE MIR -29 247 182 6 1575 264 127 0 0 chr4 129779186 129779241 -25850879 + (A)n Simple_repeat Simple_repeat 1 55 0 6 1575 332 192 106 48 chr4 129779847 129779951 -25850169 + RSINE1 SINE B4 1 110 -55 6 1575 366 23 0 0 chr4 129779979 129780022 -25850098 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1575 297 217 128 35 chr4 129780321 129780407 -25849713 + RSINE1 SINE B4 43 136 -29 6 1575 874 230 36 0 chr4 129780997 129781193 -25848927 - B3 SINE B2 -4 212 10 6 1575 232 262 82 0 chr4 129781363 129781424 -25848696 - PB1D10 SINE Alu 0 117 52 6 1575 252 376 7 22 chr4 129781408 129781544 -25848576 - YREP_Mm Unknown Unknown -1484 328 195 6 1575 593 273 0 15 chr4 129781432 129781566 -25848554 + ID_B1 SINE B4 93 224 0 6 1575 225 83 0 0 chr4 129781623 129781659 -25848461 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1575 863 179 0 0 chr4 129781659 129781804 -25848316 - B1_Mur4 SINE Alu -5 145 1 6 1575 760 239 60 20 chr4 129782392 129782593 -25847527 - B3 SINE B2 -2 214 6 6 1575 329 211 200 0 chr4 129782604 129782694 -25847426 - PB1D10 SINE Alu -5 112 5 6 1575 328 392 51 13 chr4 129782774 129783160 -25846960 - L2c LINE L2 -250 3176 2776 6 1575 345 229 28 19 chr4 129783561 129783668 -25846452 - MIRb SINE MIR -132 136 29 6 1575 232 258 60 15 chr4 129783893 129783960 -25846160 - L2a LINE L2 -45 3381 3312 6 1575 441 217 64 28 chr4 129783984 129784093 -25846027 - PB1D9 SINE Alu -6 114 2 6 1575 263 283 41 52 chr4 129784249 129784346 -25845774 + MIR SINE MIR 53 148 -60 6 1575 291 380 9 9 chr4 129785350 129785464 -25844656 - MIRm SINE MIR -110 166 53 6 1575 180 0 0 0 chr4 129785627 129785647 -25844473 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1575 191 287 53 33 chr4 129785647 129785786 -25844334 + MIR SINE MIR 114 259 -9 6 1575 395 235 71 0 chr4 129786037 129786135 -25843985 - RSINE1 SINE B4 -59 106 2 6 1575 266 262 33 0 chr4 129786662 129786723 -25843397 + MER5A1 DNA MER1_type 35 97 -69 6 1575 528 280 151 104 chr4 129786766 129787045 -25843075 - B4A SINE B4 0 292 1 6 1575 180 333 17 75 chr4 129788184 129788304 -25841816 - L2 LINE L2 -467 2952 2840 6 1575 278 268 26 26 chr4 129788584 129788699 -25841421 - L2 LINE L2 -1005 2414 2300 6 1575 196 344 21 89 chr4 129789620 129789856 -25840264 + L2 LINE L2 2477 2696 -723 6 1575 181 240 40 0 chr4 129790027 129790077 -25840043 - MIRb SINE MIR -4 264 213 6 1575 245 169 0 17 chr4 129790085 129790145 -25839975 + (ATGGTG)n Simple_repeat Simple_repeat 6 64 0 6 1575 956 215 111 42 chr4 129790914 129791220 -25838900 + RLTR40 LTR ERVK 1 327 -490 6 1575 1315 29 117 0 chr4 129791323 129791477 -25838643 + B2_Mm1a SINE B2 2 155 -38 6 1575 339 25 0 0 chr4 129791477 129791517 -25838603 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 6 1575 1315 29 117 0 chr4 129791517 129791533 -25838587 + B2_Mm1a SINE B2 156 190 -3 6 1575 889 118 0 15 chr4 129791538 129791668 -25838452 + B1_Mus2 SINE Alu 7 135 -12 6 1575 219 36 0 0 chr4 129791668 129791696 -25838424 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1575 294 240 39 39 chr4 129791698 129791802 -25838318 + RLTR40 LTR ERVK 492 595 -222 6 1575 540 0 0 0 chr4 129791864 129791924 -25838196 + (TGG)n Simple_repeat Simple_repeat 2 61 0 6 1575 683 174 63 35 chr4 129791928 129792071 -25838049 - B1_Mur3 SINE Alu -2 147 1 6 1575 225 0 0 0 chr4 129793043 129793068 -25837052 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1575 806 168 14 0 chr4 129793320 129793463 -25836657 + B1_Mur4 SINE Alu 6 150 0 6 1575 1982 160 76 80 chr4 129795068 129795516 -25834604 + RLTR25B LTR ERVK 1 446 -582 6 1575 1114 186 124 43 chr4 129795704 129796064 -25834056 + ORR1A3-int LTR MaLR 406 786 -1177 6 1575 1222 163 80 66 chr4 129795902 129796214 -25833906 + MT2B LTR ERVL 36 280 -321 6 1575 529 244 113 139 chr4 129796046 129796421 -25833699 + RLTR25B LTR ERVK 442 805 -223 6 1575 825 141 30 0 chr4 129796421 129796556 -25833564 + B1_Mus1 SINE Alu 3 141 -7 6 1575 378 0 0 0 chr4 129796558 129796600 -25833520 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1575 529 221 81 163 chr4 129796600 129796789 -25833331 + RLTR25B LTR ERVK 702 1025 -3 6 1575 703 165 92 76 chr4 129797094 129797278 -25832842 - B2_Mm2 SINE B2 -5 190 4 6 1575 1031 57 7 0 chr4 129797297 129797438 -25832682 - B1_Mus2 SINE Alu 0 147 6 6 1575 357 221 42 10 chr4 129797709 129797805 -25832315 + RLTR40 LTR ERVK 660 758 -59 6 1575 281 306 97 53 chr4 129798871 129799099 -25831021 - MLT1I LTR MaLR -43 368 131 6 1575 284 276 95 0 chr4 129799370 129799475 -25830645 + MIRb SINE MIR 116 230 -38 6 1575 200 321 118 12 chr4 129800496 129800581 -25829539 - MIRc SINE MIR -122 146 53 6 1575 717 226 218 21 chr4 129800647 129800927 -25829193 - MTD LTR MaLR 0 419 85 6 1575 871 128 0 0 chr4 129800963 129801096 -25829024 + B2_Mm2 SINE B2 1 133 -62 6 1575 216 97 0 0 chr4 129801107 129801138 -25828982 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6 1575 752 261 161 24 chr4 129801881 129802211 -25827909 - MTD LTR MaLR -44 375 1 6 1575 183 42 0 0 chr4 129805403 129805427 -25824693 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 6 1575 699 288 32 36 chr4 129805665 129805914 -25824206 - Charlie19a DNA Charlie -74 312 65 6 1575 236 356 126 39 chr4 129806053 129806363 -25823757 - L3 LINE CR1 -13 4476 4140 7 1575 304 284 25 0 chr4 129806528 129806609 -25823511 - ID4_ SINE ID 0 83 1 7 1575 450 0 0 0 chr4 129808551 129808601 -25821519 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1575 199 269 15 15 chr4 129808975 129809043 -25821077 + L2b LINE L2 3288 3355 -20 7 1575 266 232 94 50 chr4 129810272 129810424 -25819696 - MIRc SINE MIR -121 147 1 7 1575 311 248 21 0 chr4 129810453 129810527 -25819593 - PB1D10 SINE Alu -38 89 11 7 1575 267 133 0 0 chr4 129810540 129810585 -25819535 + (CAA)n Simple_repeat Simple_repeat 2 46 0 7 1575 351 0 0 0 chr4 129811172 129811211 -25818909 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1575 323 236 21 25 chr4 129812125 129812227 -25817893 + PB1D10 SINE Alu 6 105 -15 7 1575 592 270 74 0 chr4 129813234 129813397 -25816723 + MIRb SINE MIR 62 236 -32 7 1575 846 145 221 0 chr4 129813448 129813620 -25816500 - B3 SINE B2 -6 210 1 7 1575 276 91 0 0 chr4 129814113 129814157 -25815963 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1575 1104 108 0 0 chr4 129815015 129815181 -25814939 + (GGAA)n Simple_repeat Simple_repeat 4 169 0 7 1575 238 331 15 71 chr4 129815264 129815429 -25814691 + MIRb SINE MIR 108 262 0 7 1575 259 301 11 46 chr4 129815420 129815507 -25814613 - MIR SINE MIR -103 159 76 7 1575 405 275 133 33 chr4 129816982 129817176 -25812944 - MIRb SINE MIR -39 229 18 7 1575 396 0 0 0 chr4 129817359 129817403 -25812717 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1575 580 112 16 8 chr4 129817865 129817991 -25812129 + (CAGAGA)n Simple_repeat Simple_repeat 3 129 0 7 1575 503 31 0 15 chr4 129818963 129819029 -25811091 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1575 311 217 0 89 chr4 129820385 129820448 -25809672 + BC1_Mm scRNA scRNA 1 60 -92 7 1575 4345 149 62 88 chr4 129820448 129821375 -25808745 + RMER19B LTR ERVK 1 902 0 7 1575 311 217 0 89 chr4 129821375 129821412 -25808708 + BC1_Mm scRNA scRNA 61 92 -60 7 1575 241 267 17 0 chr4 129821467 129821527 -25808593 + MLT1D LTR MaLR 92 152 -353 7 1575 312 91 0 0 chr4 129821767 129821811 -25808309 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1575 2116 187 27 12 chr4 129822113 129822520 -25807600 - MTC LTR MaLR -8 413 1 7 1575 1361 200 74 55 chr4 129822814 129823179 -25806941 + ORR1D1 LTR MaLR 1 372 -2 7 1575 557 186 2 0 chr4 129823328 129823445 -25806675 + B1_Mur1 SINE Alu 11 129 -20 7 1575 210 156 0 0 chr4 129823448 129823493 -25806627 + GA-rich Low_complexity Low_complexity 2 46 0 7 1575 460 176 26 0 chr4 129823554 129823707 -25806413 + (CAGAGA)n Simple_repeat Simple_repeat 6 162 0 7 1575 400 279 58 7 chr4 129824080 129824217 -25805903 + MIR SINE MIR 16 159 -103 7 1575 1064 222 5 5 chr4 129824321 129824538 -25805582 + ID_B1 SINE B4 2 218 -6 7 1575 366 190 0 37 chr4 129824540 129824622 -25805498 - PB1D9 SINE Alu 0 120 42 7 1575 651 165 17 0 chr4 129824647 129824823 -25805297 + GA-rich Low_complexity Low_complexity 2 180 0 7 1575 348 322 8 32 chr4 129824842 129824922 -25805198 + MLT1D LTR MaLR 111 190 -315 7 1575 1577 42 0 0 chr4 129824922 129825115 -25805005 + B2_Mm1a SINE B2 1 193 0 7 1575 348 322 8 32 chr4 129825115 129825159 -25804961 + MLT1D LTR MaLR 191 232 -273 7 1575 382 225 0 0 chr4 129825287 129825358 -25804762 + RSINE1 SINE B4 4 74 -91 7 1575 612 174 0 0 chr4 129825432 129825553 -25804567 + (TG)n Simple_repeat Simple_repeat 1 121 0 7 1575 262 391 29 22 chr4 129825647 129825783 -25804337 - MLT1J LTR MaLR -329 183 47 7 1575 619 271 19 12 chr4 129827038 129827199 -25802921 - RSINE1 SINE B4 -2 163 2 7 1575 312 62 60 30 chr4 129827391 129827458 -25802662 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 7 1575 252 288 35 59 chr4 129827481 129827566 -25802554 - ID_B1 SINE B4 -51 173 91 7 1575 315 0 0 0 chr4 129827590 129827625 -25802495 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1575 658 310 84 60 chr4 129827637 129827820 -25802300 - B4A SINE B4 0 292 97 7 1575 1256 67 0 6 chr4 129827820 129828001 -25802119 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1575 658 310 84 60 chr4 129828001 129828102 -25802018 - B4A SINE B4 -196 96 1 7 1575 306 50 0 0 chr4 129828104 129828144 -25801976 + (TATG)n Simple_repeat Simple_repeat 2 41 0 7 1575 766 236 30 5 chr4 129828144 129828344 -25801776 - B3 SINE B2 -11 205 1 7 1575 575 281 107 0 chr4 129828355 129828551 -25801569 - ID_B1 SINE B4 -6 218 2 7 1575 292 317 70 28 chr4 129828985 129829128 -25800992 + LTR88b LTR Gypsy? 56 204 -633 7 1575 303 347 40 23 chr4 129829204 129829378 -25800742 + L1M5 LINE L1 3580 3756 -2390 7 1575 755 277 40 30 chr4 129829545 129829746 -25800374 + ID_B1 SINE B4 13 215 -9 7 1575 692 216 14 0 chr4 129829801 129829940 -25800180 + B1_Mus1 SINE Alu 2 142 -6 7 1575 815 165 0 22 chr4 129829942 129830122 -25799998 + GA-rich Low_complexity Low_complexity 3 178 0 7 1575 608 191 0 38 chr4 129830142 129830327 -25799793 + GA-rich Low_complexity Low_complexity 1 178 0 7 1575 886 196 76 20 chr4 129830375 129830573 -25799547 + B3 SINE B2 8 216 0 7 1575 718 188 20 20 chr4 129830599 129830746 -25799374 + B1_Mur3 SINE Alu 2 148 -1 7 1575 373 267 95 122 chr4 129830765 129830987 -25799133 + ID_B1 SINE B4 2 217 -7 7 1575 254 243 54 0 chr4 129831386 129831460 -25798660 - ID4 SINE ID -3 80 3 7 1575 449 226 49 0 chr4 129831472 129831574 -25798546 - PB1D10 SINE Alu -2 115 9 7 1575 260 333 61 0 chr4 129831491 129831590 -25798530 - ID_B1 SINE B4 -48 176 72 7 1575 475 352 106 3 chr4 129831982 129832293 -25797827 - L1M5 LINE L1 -3016 3130 2788 7 1575 313 229 0 126 chr4 129832336 129832431 -25797689 - ID4_ SINE ID 0 83 1 7 1575 389 240 80 0 chr4 129832498 129832598 -25797522 - PB1D10 SINE Alu -1 116 9 7 1575 489 138 0 0 chr4 129832598 129832678 -25797442 + (CCA)n Simple_repeat Simple_repeat 1 80 0 7 1575 869 182 199 0 chr4 129832812 129832988 -25797132 - B3 SINE B2 -4 212 2 7 1575 656 289 76 22 chr4 129833241 129833517 -25796603 + B4A SINE B4 1 291 -1 7 1575 346 227 31 0 chr4 129833531 129833694 -25796426 + (CA)n Simple_repeat Simple_repeat 2 169 0 7 1575 203 252 28 0 chr4 129833746 129833889 -25796231 + (CA)n Simple_repeat Simple_repeat 1 147 0 7 1575 410 195 37 0 chr4 129833900 129834099 -25796021 + (CA)n Simple_repeat Simple_repeat 1 206 0 7 1575 534 312 21 0 chr4 129834881 129835022 -25795098 - ID_B1 SINE B4 0 224 81 7 1575 1104 167 23 37 chr4 129835665 129835883 -25794237 + B3 SINE B2 2 216 0 7 1575 719 175 65 11 chr4 129835906 129836081 -25794039 + B3 SINE B2 1 190 -5 7 1575 783 210 180 11 chr4 129836592 129836741 -25793379 + B3 SINE B2 2 165 -51 7 1575 617 38 12 0 chr4 129836741 129836821 -25793299 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1575 783 210 180 11 chr4 129836821 129836854 -25793266 + B3 SINE B2 166 214 -2 7 1575 397 266 202 23 chr4 129836873 129837046 -25793074 - MER21B LTR ERV1 -73 790 587 7 1575 643 261 8 0 chr4 129837101 129837235 -25792885 - ID_B1 SINE B4 -6 218 84 7 1575 228 293 0 0 chr4 129837314 129837372 -25792748 + B1F1 SINE Alu 1 58 -91 7 1575 497 16 16 0 chr4 129837433 129837495 -25792625 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1575 255 125 0 0 chr4 129837523 129837563 -25792557 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1575 1048 242 86 16 chr4 129837565 129837809 -25792311 - B4A SINE B4 -27 265 5 7 1575 477 0 0 0 chr4 129838458 129838511 -25791609 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1575 306 0 0 0 chr4 129838511 129838544 -25791576 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1575 719 116 8 0 chr4 129839185 129839306 -25790814 + (TG)n Simple_repeat Simple_repeat 1 122 0 7 1575 735 274 45 90 chr4 129839307 129839596 -25790524 - B4A SINE B4 -16 276 1 7 1575 222 0 79 0 chr4 129839744 129839782 -25790338 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1575 652 227 45 32 chr4 129839798 129839953 -25790167 - B3A SINE B2 -41 157 1 7 1575 489 203 311 0 chr4 129840134 129840282 -25789838 + ID_B1 SINE B4 15 208 -16 7 1575 276 307 79 0 chr4 129840168 129840295 -25789825 + B1F SINE Alu 12 148 -1 7 1575 345 204 129 30 chr4 129841229 129841330 -25788790 + ID_B1 SINE B4 87 197 -27 7 1575 203 364 10 0 chr4 129841720 129841819 -25788301 + G-rich Low_complexity Low_complexity 4 103 0 7 1575 298 106 21 0 chr4 129842034 129842081 -25788039 - ID_B1 SINE B4 -14 210 163 7 1575 308 206 68 14 chr4 129842044 129842118 -25788002 - PB1D10 SINE Alu -28 89 12 7 1575 355 157 24 12 chr4 129842228 129842312 -25787808 + G-rich Low_complexity Low_complexity 4 88 0 7 1575 421 299 16 16 chr4 129842618 129842747 -25787373 - ID_B1 SINE B4 -16 208 80 7 1575 377 314 64 8 chr4 129843770 129843895 -25786225 - ID_B1 SINE B4 -2 222 91 7 1575 315 0 0 0 chr4 129845301 129845336 -25784784 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1575 191 295 99 37 chr4 129846759 129846840 -25783280 + L2b LINE L2 2281 2366 -1053 7 1575 197 217 22 0 chr4 129846918 129846964 -25783156 + L2b LINE L2 2532 2578 -841 7 1575 184 261 235 8 chr4 129846983 129847230 -25782890 + L2b LINE L2 2643 2945 -474 7 1575 704 194 184 21 chr4 129847239 129847429 -25782691 - ID_B1 SINE B4 -2 222 2 7 1575 458 256 23 30 chr4 129847556 129847689 -25782431 - B1F SINE Alu 0 149 18 7 1575 181 315 31 92 chr4 129847774 129847872 -25782248 + MIR SINE MIR 80 171 -91 7 1575 1217 54 0 0 chr4 129848011 129848158 -25781962 + B1_Mus1 SINE Alu 2 148 0 7 1575 225 65 0 0 chr4 129848161 129848192 -25781928 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1575 288 314 72 44 chr4 129848632 129848812 -25781308 + L2b LINE L2 3170 3354 -21 7 1575 381 43 0 0 chr4 129849384 129849431 -25780689 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1575 190 213 0 60 chr4 129850024 129850074 -25780046 - MIRm SINE MIR -114 162 116 7 1575 351 235 22 45 chr4 129853210 129853289 -25776831 + ID SINE ID 9 85 -139 7 1575 473 267 8 8 chr4 129853289 129853406 -25776714 + RSINE1 SINE B4 2 118 -47 7 1575 452 62 16 0 chr4 129853437 129853501 -25776619 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1575 424 248 119 0 chr4 129853508 129853609 -25776511 + ID_B1 SINE B4 93 205 -19 7 1575 525 32 0 0 chr4 129853983 129854046 -25776074 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1575 426 53 0 0 chr4 129854056 129854113 -25776007 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1575 656 340 15 0 chr4 129855240 129855446 -25774674 + ID_B1 SINE B4 16 224 0 8 1575 749 155 0 14 chr4 129855447 129855591 -25774529 + A-rich Low_complexity Low_complexity 3 144 0 8 1575 1798 145 232 9 chr4 129855678 129856019 -25774101 + MTC LTR MaLR 3 419 -2 8 1575 202 383 76 61 chr4 129856042 129856384 -25773736 - L2b LINE L2 -4 3371 3025 8 1575 292 304 62 9 chr4 129856512 129856625 -25773495 + PB1D7 SINE Alu 1 119 -1 8 1575 185 370 14 0 chr4 129856634 129856707 -25773413 - L2b LINE L2 -595 2824 2751 8 1575 948 182 0 0 chr4 129856716 129856864 -25773256 - B1_Mus1 SINE Alu 0 148 1 8 1575 256 287 50 50 chr4 129857240 129857361 -25772759 + PB1 SINE Alu 1 121 -6 8 1575 190 311 80 15 chr4 129857675 129857812 -25772308 - L2b LINE L2 -1483 1936 1791 8 1575 618 216 42 35 chr4 129857821 129857965 -25772155 + ID_B1 SINE B4 80 224 0 8 1575 1193 79 0 9 chr4 129858051 129858268 -25771852 + (TG)n Simple_repeat Simple_repeat 1 215 0 8 1575 266 362 19 0 chr4 129858463 129858568 -25771552 - MIRc SINE MIR -108 160 54 8 1575 438 271 24 16 chr4 129858983 129859107 -25771013 - B1F SINE Alu -5 144 20 8 1575 213 176 19 19 chr4 129859062 129859114 -25771006 - B4A SINE B4 -144 148 97 8 1575 531 219 26 17 chr4 129859623 129859739 -25770381 + PB1D10 SINE Alu 1 117 0 8 1575 193 345 91 28 chr4 129860133 129860276 -25769844 + MIR SINE MIR 111 262 0 8 1575 250 217 33 0 chr4 129860854 129860914 -25769206 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 8 1575 279 79 0 0 chr4 129860934 129860972 -25769148 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1575 275 298 140 0 chr4 129861601 129861715 -25768405 - MIRb SINE MIR -53 215 86 8 1575 260 307 11 33 chr4 129861937 129862028 -25768092 + ID_B1 SINE B4 81 169 -55 8 1575 358 253 12 0 chr4 129861949 129862032 -25768088 + B1F SINE Alu 12 95 -54 8 1575 329 22 44 0 chr4 129862033 129862078 -25768042 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 8 1575 261 0 0 0 chr4 129862082 129862111 -25768009 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1575 631 271 65 79 chr4 129862116 129862178 -25767942 + B4A SINE B4 1 50 -242 8 1575 1211 41 0 20 chr4 129862178 129862326 -25767794 + B1_Mus2 SINE Alu 2 146 -1 8 1575 631 271 65 79 chr4 129862326 129862540 -25767580 + B4A SINE B4 51 273 -19 8 1575 255 307 19 47 chr4 129862570 129862587 -25767533 + ID_B1 SINE B4 83 185 -39 8 1575 325 232 45 34 chr4 129862587 129862676 -25767444 + B1F SINE Alu 18 107 -42 8 1575 717 173 30 8 chr4 129862881 129863015 -25767105 + B1_Mur4 SINE Alu 2 138 -12 8 1575 212 0 36 0 chr4 129863015 129863043 -25767077 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 8 1575 317 296 112 0 chr4 129863345 129863443 -25766677 - PB1D7 SINE Alu -1 119 11 8 1575 559 225 0 32 chr4 129863553 129863677 -25766443 - B1_Mus2 SINE Alu -19 128 9 8 1575 501 314 205 22 chr4 129863687 129864220 -25765900 - MLT1E1A LTR MaLR 0 680 9 8 1575 409 324 78 54 chr4 129864225 129864483 -25765637 - L1MC LINE L1 -2271 5611 5348 8 1575 24 0 0 0 chr4 129864488 129864512 -25765608 + AT_rich Low_complexity Low_complexity 1 24 0 8 1575 335 264 11 11 chr4 129864581 129864673 -25765447 - B4A SINE B4 -61 231 140 8 1575 242 246 98 0 chr4 129864834 129864895 -25765225 - B4A SINE B4 -225 67 1 8 1575 243 0 0 0 chr4 129864911 129864938 -25765182 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1575 1066 200 5 48 chr4 129864964 129865174 -25764946 - B3 SINE B2 -14 202 2 8 1575 927 162 190 0 chr4 129865249 129865282 -25764838 - B3 SINE B2 0 216 183 8 1575 189 107 0 0 chr4 129865282 129865310 -25764810 + (TATG)n Simple_repeat Simple_repeat 3 30 0 8 1575 927 162 190 0 chr4 129865310 129865455 -25764665 - B3 SINE B2 -34 182 6 8 1575 435 208 9 70 chr4 129865561 129865675 -25764445 - B1_Mus2 SINE Alu -2 145 39 8 1575 236 91 0 22 chr4 129865743 129865788 -25764332 + (TGGGGG)n Simple_repeat Simple_repeat 3 46 0 8 1575 686 191 0 8 chr4 129865834 129865961 -25764159 + B1_Mur2 SINE Alu 23 148 -1 8 1575 565 228 9 0 chr4 129865972 129866086 -25764034 + PB1D9 SINE Alu 6 120 0 8 1575 28 29 0 0 chr4 129866600 129866635 -25763485 + AT_rich Low_complexity Low_complexity 1 35 0 8 1575 929 219 59 10 chr4 129866635 129866838 -25763282 - B3 SINE B2 -1 215 3 8 1575 259 311 0 0 chr4 129866840 129866914 -25763206 + MIRc SINE MIR 70 143 -125 8 1575 247 262 0 176 chr4 129867181 129867306 -25762814 + MT2B LTR ERVL 155 257 -344 8 1575 817 182 0 13 chr4 129867203 129867353 -25762767 + B1_Mur2 SINE Alu 2 149 0 8 1575 224 30 30 0 chr4 129867659 129867692 -25762428 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1575 1357 90 11 0 chr4 129867692 129867870 -25762250 - B2_Mm1t SINE B2 -13 180 1 8 1575 382 312 42 0 chr4 129867922 129868066 -25762054 + RSINE1 SINE B4 15 164 -1 8 1575 680 107 0 26 chr4 129868460 129868575 -25761545 - B1_Mus2 SINE Alu -1 146 35 8 1575 592 228 24 0 chr4 129868737 129868864 -25761256 + RSINE1 SINE B4 4 133 -32 8 1575 393 22 0 0 chr4 129868864 129868910 -25761210 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1575 210 37 0 0 chr4 129868910 129868936 -25761184 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1575 221 30 61 0 chr4 129868941 129868974 -25761146 + (TCTCTG)n Simple_repeat Simple_repeat 4 38 0 8 1575 495 202 0 21 chr4 129869052 129869148 -25760972 + B1F2 SINE Alu 54 147 -2 8 1575 211 31 0 179 chr4 129869259 129869337 -25760783 + (CCCA)n Simple_repeat Simple_repeat 3 66 0 8 1575 351 0 0 0 chr4 129869386 129869425 -25760695 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 8 1575 370 282 113 31 chr4 129869699 129869893 -25760227 + L1M5 LINE L1 2690 2899 -3247 8 1575 380 176 0 12 chr4 129869987 129870006 -25760114 + polypurine Low_complexity Low_complexity 3 20 0 8 1575 1017 107 157 0 chr4 129870006 129870165 -25759955 + B2_Mm2 SINE B2 1 184 -11 8 1575 380 176 0 12 chr4 129870165 129870231 -25759889 + GA-rich Low_complexity Low_complexity 21 86 0 8 1575 407 211 0 0 chr4 129870262 129870338 -25759782 + ID_B1 SINE B4 138 213 -11 8 1575 634 193 0 25 chr4 129870425 129870547 -25759573 + PB1D7 SINE Alu 1 119 -1 8 1575 306 256 162 35 chr4 129870547 129870563 -25759557 + B4A SINE B4 86 241 -51 8 1575 28 29 0 0 chr4 129870583 129870618 -25759502 + AT_rich Low_complexity Low_complexity 1 35 0 8 1575 427 215 0 0 chr4 129870675 129870754 -25759366 + B3A SINE B2 7 85 -113 8 1575 273 324 132 35 chr4 129870754 129870819 -25759301 + RSINE1 SINE B4 8 165 0 8 1575 315 160 0 0 chr4 129870854 129870904 -25759216 + B1_Mus2 SINE Alu 5 54 -93 8 1575 1073 156 0 22 chr4 129870913 129871097 -25759023 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1575 295 286 0 0 chr4 129871047 129871131 -25758989 + GA-rich Low_complexity Low_complexity 3 86 0 8 1575 309 224 82 0 chr4 129871133 129871218 -25758902 + B1_Mur2 SINE Alu 42 133 -16 8 1575 607 317 70 0 chr4 129871459 129871755 -25758365 + L1M5 LINE L1 3505 3822 -2324 8 1575 308 265 0 0 chr4 129871761 129871829 -25758291 + RSINE1 SINE B4 3 70 -95 8 1575 591 301 111 11 chr4 129871823 129872085 -25758035 + MT2A LTR ERVL 243 530 -3 8 1575 327 286 31 118 chr4 129872393 129872520 -25757600 + PB1D10 SINE Alu 28 143 -6 8 1575 254 261 182 7 chr4 129872545 129872698 -25757422 + L1M5 LINE L1 5468 5648 -516 8 1575 882 252 102 29 chr4 129873134 129873448 -25756672 - MTD LTR MaLR 0 419 83 8 1575 25 31 0 0 chr4 129873548 129873580 -25756540 + AT_rich Low_complexity Low_complexity 1 32 0 8 1575 1105 248 76 50 chr4 129873590 129873757 -25756363 + MTE2b LTR MaLR 2 170 -209 8 1575 1200 14 0 0 chr4 129873757 129873895 -25756225 + (GGGAGA)n Simple_repeat Simple_repeat 6 143 0 8 1575 1105 248 76 50 chr4 129873895 129874084 -25756036 + MTE2b LTR MaLR 171 367 -12 8 1575 315 0 0 0 chr4 129874265 129874300 -25755820 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1575 665 276 45 14 chr4 129874322 129874535 -25755585 - B3A SINE B2 -5 211 6 8 1575 581 0 0 14 chr4 129874549 129874619 -25755501 + (GTTTG)n Simple_repeat Simple_repeat 2 70 0 8 1575 1014 143 0 0 chr4 129874619 129874758 -25755362 - B1_Mus1 SINE Alu -8 140 2 8 1575 760 243 20 0 chr4 129874825 129874973 -25755147 + RSINE1 SINE B4 2 152 -13 8 1575 492 289 36 81 chr4 129875044 129875105 -25755015 - B3 SINE B2 -3 213 166 8 1575 333 47 0 0 chr4 129875105 129875148 -25754972 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1575 635 252 45 16 chr4 129875148 129875308 -25754812 - B3A SINE B2 -51 165 2 8 1575 226 282 42 14 chr4 129875326 129875398 -25754722 - MER5A DNA MER1_type -28 161 88 8 1575 277 241 9 0 chr4 129875518 129875582 -25754538 + PB1D10 SINE Alu 5 72 -55 8 1575 252 273 15 0 chr4 129875527 129875593 -25754527 + ID_B1 SINE B4 96 162 -62 8 1575 339 314 43 54 chr4 129875735 129875920 -25754200 + L2a LINE L2 3243 3425 -1 8 1575 388 301 0 104 chr4 129876027 129876190 -25753930 + RSINE1 SINE B4 20 165 0 8 1575 186 306 32 0 chr4 129877186 129877248 -25752872 + L2 LINE L2 2039 2102 -1317 8 1575 190 0 67 0 chr4 129877465 129877495 -25752625 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1575 1089 37 37 7 chr4 129877495 129877630 -25752490 - B1_Mm SINE Alu -8 139 1 8 1575 582 314 41 60 chr4 129878091 129878359 -25751761 - RLTR26 LTR ERVK -213 429 167 8 1575 876 46 0 0 chr4 129878509 129878618 -25751502 + (TCC)n Simple_repeat Simple_repeat 2 110 0 8 1575 813 132 75 14 chr4 129878619 129878765 -25751355 - B2_Mm2 SINE B2 -10 185 31 8 1575 390 170 18 28 chr4 129879226 129879335 -25750785 + (TGGA)n Simple_repeat Simple_repeat 2 109 0 9 1575 895 144 43 18 chr4 129879351 129879869 -25750251 + (TGGA)n Simple_repeat Simple_repeat 1 531 0 9 1575 787 111 52 13 chr4 129879891 129880364 -25749756 + (TGGA)n Simple_repeat Simple_repeat 1 491 0 9 1575 782 107 61 0 chr4 129880378 129880703 -25749417 + (TGGA)n Simple_repeat Simple_repeat 1 344 0 9 1575 876 89 50 12 chr4 129880722 129881064 -25749056 + (TGGA)n Simple_repeat Simple_repeat 1 354 0 9 1575 309 159 87 104 chr4 129881110 129881293 -25748827 - HAL1-2a_MD LINE L1 -505 2519 2340 9 1575 794 100 58 0 chr4 129881293 129881553 -25748567 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 9 1575 860 96 58 0 chr4 129881567 129881996 -25748124 + (TGGA)n Simple_repeat Simple_repeat 1 454 0 9 1575 836 93 51 13 chr4 129882016 129882494 -25747626 + (TGGA)n Simple_repeat Simple_repeat 1 496 0 9 1575 274 146 61 0 chr4 129882522 129882604 -25747516 + (TGGA)n Simple_repeat Simple_repeat 4 90 0 9 1575 655 107 65 0 chr4 129882639 129882808 -25747312 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 9 1575 919 110 46 14 chr4 129882826 129883349 -25746771 + (TGGA)n Simple_repeat Simple_repeat 1 540 0 9 1575 975 86 20 0 chr4 129883412 129883564 -25746556 + (TGGA)n Simple_repeat Simple_repeat 3 157 0 9 1575 203 152 22 0 chr4 129883575 129883621 -25746499 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 9 1575 649 108 59 11 chr4 129883650 129883923 -25746197 + (TGGA)n Simple_repeat Simple_repeat 1 286 0 9 1575 576 119 71 0 chr4 129883948 129884116 -25746004 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 9 1575 910 75 40 17 chr4 129884153 129884329 -25745791 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 9 1575 921 103 45 18 chr4 129884347 129885154 -25744966 + (TGGA)n Simple_repeat Simple_repeat 1 829 0 9 1575 869 117 44 0 chr4 129885165 129885629 -25744491 + (TGGA)n Simple_repeat Simple_repeat 1 484 0 9 1575 721 95 65 0 chr4 129885672 129885841 -25744279 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 9 1575 438 153 55 0 chr4 129885861 129886024 -25744096 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 9 1575 674 93 60 9 chr4 129886069 129886288 -25743832 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 9 1575 335 299 53 33 chr4 129888134 129888286 -25741834 - MER5B DNA MER1_type -19 159 5 9 1575 361 219 0 0 chr4 129889221 129889285 -25740835 - BC1_Mm scRNA scRNA -83 69 6 9 1575 533 231 0 9 chr4 129889295 129889400 -25740720 - PB1D10 SINE Alu -9 108 5 9 1575 311 232 232 0 chr4 129889420 129889515 -25740605 - PB1D7 SINE Alu -1 119 3 9 1575 393 350 38 0 chr4 129889517 129889677 -25740443 + MER74A LTR ERVL 21 186 -372 9 1575 958 228 64 5 chr4 129889698 129889901 -25740219 - B3 SINE B2 0 216 2 9 1575 428 272 83 35 chr4 129889908 129890079 -25740041 + MER74A LTR ERVL 207 416 -206 9 1575 467 263 0 0 chr4 129890091 129890186 -25739934 + PB1D7 SINE Alu 24 118 -2 9 1575 366 195 0 0 chr4 129890186 129890263 -25739857 + (TAA)n Simple_repeat Simple_repeat 1 77 0 9 1575 817 255 42 56 chr4 129890263 129890423 -25739697 + ID_B1 SINE B4 9 169 -55 9 1575 3371 172 47 7 chr4 129890423 129891015 -25739105 + RLTR18 LTR ERVK 1 616 0 9 1575 817 255 42 56 chr4 129891015 129891070 -25739050 + ID_B1 SINE B4 170 221 -3 9 1575 368 318 131 11 chr4 129891618 129891793 -25738327 + MIRc SINE MIR 18 213 -55 9 1576 342 299 58 29 chr4 129893028 129893166 -25736954 + HAL1-3A_ME LINE L1 2297 2438 -420 9 1576 897 205 0 0 chr4 129893167 129893515 -25736605 + GA-rich Low_complexity Low_complexity 1 348 0 9 1576 577 266 0 0 chr4 129894316 129894429 -25735691 + RSINE1 SINE B4 4 116 -49 9 1576 390 114 0 0 chr4 129894439 129894509 -25735611 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 1576 26 74 0 0 chr4 129894512 129894566 -25735554 + AT_rich Low_complexity Low_complexity 1 54 0 9 1576 671 245 144 36 chr4 129894605 129894800 -25735320 - ID_B1 SINE B4 -7 217 2 9 1576 378 234 28 9 chr4 129894806 129894914 -25735206 - PB1D10 SINE Alu -7 110 1 9 1576 366 260 128 39 chr4 129894919 129895075 -25735045 - MER96B DNA hAT -112 305 136 9 1576 1261 103 33 0 chr4 129895077 129895261 -25734859 - B2_Mm2 SINE B2 -5 190 1 9 1576 21 36 0 0 chr4 129895302 129895330 -25734790 + AT_rich Low_complexity Low_complexity 1 28 0 9 1576 1012 122 14 0 chr4 129895846 129895993 -25734127 + B1_Mur4 SINE Alu 2 150 0 9 1576 570 255 57 102 chr4 129896699 129897053 -25733067 + RMER10A LTR ERVL 80 417 -25 9 1576 215 246 4 7 chr4 129897054 129897111 -25733009 - MIRc SINE MIR -107 169 111 9 1576 393 232 326 11 chr4 129897229 129897399 -25732721 + ID_B1 SINE B4 1 224 0 9 1576 270 0 0 0 chr4 129897850 129897880 -25732240 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1576 272 294 59 0 chr4 129897902 129897970 -25732150 - B4 SINE B4 -140 152 81 9 1576 211 146 0 35 chr4 129898041 129898065 -25732055 + polypyrimidine Low_complexity Low_complexity 33 56 0 9 1576 1205 96 0 6 chr4 129898065 129898244 -25731876 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 9 1576 211 146 0 35 chr4 129898244 129898276 -25731844 + polypyrimidine Low_complexity Low_complexity 2 32 0 9 1576 1239 28 21 0 chr4 129898288 129898431 -25731689 - B1_Mm SINE Alu 0 147 2 9 1576 937 114 0 15 chr4 129898432 129898565 -25731555 - B1_Mur2 SINE Alu -2 147 17 9 1576 792 204 26 26 chr4 129899500 129899656 -25730464 - RLTR26 LTR ERVK 0 642 487 9 1576 2441 177 63 86 chr4 129900036 129900605 -25729515 - RLTR26 LTR ERVK -86 556 1 9 1576 199 286 73 70 chr4 129901505 129901615 -25728505 + MIRb SINE MIR 49 159 -117 9 1576 570 215 0 0 chr4 129901716 129901851 -25728269 + (CA)n Simple_repeat Simple_repeat 2 136 0 9 1576 306 0 0 0 chr4 129902100 129902134 -25727986 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 9 1576 901 259 5 0 chr4 129902628 129902813 -25727307 - B3 SINE B2 -30 186 1 9 1576 405 0 0 0 chr4 129903232 129903277 -25726843 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1576 221 279 98 0 chr4 129903385 129903446 -25726674 - B4 SINE B4 -225 67 1 9 1576 234 278 0 0 chr4 129903916 129904013 -25726107 + (GGATG)n Simple_repeat Simple_repeat 4 100 0 9 1576 541 164 0 30 chr4 129904056 129904188 -25725932 + (GGGTG)n Simple_repeat Simple_repeat 4 131 0 9 1576 1319 254 106 3 chr4 129904192 129904532 -25725588 + MTE2b LTR MaLR 1 375 -4 9 1576 267 265 118 0 chr4 129904716 129904784 -25725336 - ID4_ SINE ID -6 77 2 9 1576 214 308 79 90 chr4 129904910 129904935 -25725185 - B2_Mm1t SINE B2 -5 188 159 9 1576 186 103 0 0 chr4 129904935 129904964 -25725156 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1576 214 308 79 90 chr4 129904964 129904987 -25725133 - B2_Mm1t SINE B2 -35 158 2 9 1576 448 321 36 21 chr4 129904987 129905127 -25724993 - RSINE1 SINE B4 -21 144 3 9 1576 1172 67 127 0 chr4 129905153 129905318 -25724802 + B2_Mm2 SINE B2 1 186 -9 9 1576 1029 128 0 20 chr4 129905388 129905539 -25724581 + B1_Mur3 SINE Alu 1 148 -1 9 1576 1237 61 0 0 chr4 129905628 129905775 -25724345 + B1_Mus2 SINE Alu 1 147 0 9 1576 391 302 81 3 chr4 129905893 129906062 -25724058 - L1MA7 LINE L1 -175 6005 5821 9 1576 186 143 0 0 chr4 129906181 129906216 -25723904 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 9 1576 615 324 46 35 chr4 129906339 129906624 -25723496 - B4A SINE B4 -2 290 3 9 1576 3659 192 110 166 chr4 129906863 129907552 -25722568 - RLTR25A LTR ERVK -3 1100 331 9 1576 601 45 11 11 chr4 129907552 129907642 -25722478 + (TA)n Simple_repeat Simple_repeat 2 91 0 9 1576 3659 192 110 166 chr4 129907642 129908110 -25722010 - RLTR25A LTR ERVK -773 330 8 9 1576 461 323 83 0 chr4 129908333 129908466 -25721654 - B4 SINE B4 -66 226 83 9 1576 378 0 0 0 chr4 129908478 129908520 -25721600 + (TAAG)n Simple_repeat Simple_repeat 4 45 0 9 1576 658 120 10 0 chr4 129908523 129908623 -25721497 - B1_Mur3 SINE Alu -7 142 42 9 1576 234 192 65 83 chr4 129908559 129908667 -25721453 - RLTR25B LTR ERVK -526 502 397 9 1576 309 161 52 35 chr4 129908687 129908745 -25721375 - PB1D9 SINE Alu -61 59 1 9 1576 23 0 0 0 chr4 129908759 129908782 -25721338 + AT_rich Low_complexity Low_complexity 1 23 0 9 1576 420 20 0 0 chr4 129908866 129908915 -25721205 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1576 413 245 139 44 chr4 129908981 129909139 -25720981 - Lx7 LINE L1 -361 7335 7163 9 1576 273 274 17 78 chr4 129909139 129909174 -25720946 - BC1_Mm scRNA scRNA -35 117 30 9 1576 321 197 14 40 chr4 129909174 129909248 -25720872 - B4 SINE B4 -206 86 15 9 1576 198 91 0 0 chr4 129909361 129909394 -25720726 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1576 1648 311 43 80 chr4 129909416 129909870 -25720250 - MTEa-int LTR MaLR -907 673 212 9 1576 1255 54 0 0 chr4 129909870 129910018 -25720102 + B1_Mus1 SINE Alu 1 148 0 9 1576 1648 311 43 80 chr4 129910018 129910261 -25719859 - MTEa-int LTR MaLR -1369 211 2 9 1576 457 198 12 0 chr4 129910268 129910354 -25719766 - MTEa LTR MaLR -5 374 288 9 1576 346 250 0 0 chr4 129910553 129910617 -25719503 + ID4 SINE ID 2 65 -18 9 1576 744 258 34 48 chr4 129910768 129910976 -25719144 + MTD LTR MaLR 6 210 -209 9 1576 588 206 0 0 chr4 129910988 129911114 -25719006 + GA-rich Low_complexity Low_complexity 4 129 0 9 1576 807 210 117 24 chr4 129911115 129911320 -25718800 + MTD LTR MaLR 196 419 0 9 1576 335 264 45 18 chr4 129911406 129911518 -25718602 + PB1D9 SINE Alu 1 115 -5 9 1576 951 57 0 0 chr4 129911986 129912108 -25718012 + (TTC)n Simple_repeat Simple_repeat 3 124 0 9 1576 1197 121 0 2 chr4 129912109 129912662 -25717458 + (CTA)n Simple_repeat Simple_repeat 1 552 0 9 1576 629 188 9 0 chr4 129912781 129912893 -25717227 + B1_Mur2 SINE Alu 1 113 -36 9 1576 309 284 52 10 chr4 129912898 129912994 -25717126 - PB1D10 SINE Alu -16 101 2 9 1576 352 326 14 35 chr4 129912994 129913019 -25717101 + ID_B1 SINE B4 198 221 -3 9 1576 331 280 23 60 chr4 129913021 129913154 -25716966 + L1ME3 LINE L1 5943 6070 -92 9 1576 651 281 54 59 chr4 129913237 129913441 -25716679 + B4A SINE B4 90 292 0 9 1576 200 100 0 24 chr4 129913500 129913541 -25716579 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 9 1576 243 0 0 0 chr4 129913578 129913605 -25716515 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1576 840 143 75 0 chr4 129914260 129914393 -25715727 - B1_Mus1 SINE Alu -5 143 1 9 1576 279 79 0 0 chr4 129914431 129914469 -25715651 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 9 1576 580 274 68 59 chr4 129914478 129914564 -25715556 - RMER15 LTR ERVL -17 558 472 9 1576 2860 112 0 18 chr4 129914564 129914965 -25715155 + ORR1B1 LTR MaLR 1 394 0 9 1576 580 274 68 59 chr4 129914965 129915099 -25715021 - RMER15 LTR ERVL -104 471 336 9 1576 666 281 96 117 chr4 129915259 129915662 -25714458 - L1MA9 LINE L1 -159 6153 5735 9 1576 1419 81 16 0 chr4 129915662 129915847 -25714273 - B2_Mm2 SINE B2 -3 192 5 9 1576 666 281 96 117 chr4 129915847 129916228 -25713892 - L1MA9 LINE L1 -578 5734 5386 9 1576 1143 50 0 41 chr4 129916242 129916388 -25713732 - B1_Mus2 SINE Alu -6 141 2 9 1576 1017 104 104 0 chr4 129916448 129916602 -25713518 + B2_Mm1t SINE B2 2 171 -22 9 1576 462 244 39 54 chr4 129916831 129916961 -25713159 + B3 SINE B2 88 215 -1 9 1576 188 35 35 0 chr4 129917100 129917129 -25712991 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1576 183 80 0 0 chr4 129917312 129917337 -25712783 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 9 1576 1398 150 74 19 chr4 129917569 129917827 -25712293 - RMER19B LTR ERVK -2 900 629 9 1576 229 296 19 0 chr4 129918118 129918172 -25711948 + ORR1E LTR MaLR 34 88 -271 9 1576 1080 0 0 0 chr4 129918260 129918380 -25711740 + (GA)n Simple_repeat Simple_repeat 2 121 0 9 1576 395 298 0 6 chr4 129918682 129918861 -25711259 + (CTCTG)n Simple_repeat Simple_repeat 3 180 0 9 1576 428 281 0 22 chr4 129918884 129919066 -25711054 + (CCCTG)n Simple_repeat Simple_repeat 3 180 0 9 1576 525 250 36 29 chr4 129919278 129919418 -25710702 + RMER10B LTR ERVL 258 398 0 1 1576 786 134 92 0 chr4 129919418 129919537 -25710583 - B1_Mur4 SINE Alu -19 131 2 1 1576 231 36 0 0 chr4 129919540 129919568 -25710552 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1576 1186 90 6 6 chr4 129919691 129919859 -25710261 + URR1A DNA MER1_type 59 226 0 1 1576 3089 50 61 0 chr4 129919870 129920247 -25709873 + MTB LTR MaLR 1 400 0 1 1576 765 286 55 0 chr4 129920452 129920634 -25709486 + B3A SINE B2 1 192 -6 1 1576 246 182 55 0 chr4 129920654 129920700 -25709420 + MTC LTR MaLR 33 81 -315 1 1576 1257 54 0 0 chr4 129920700 129920847 -25709273 + B1_Mus1 SINE Alu 2 148 0 1 1576 340 53 52 26 chr4 129920855 129920932 -25709188 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 1 1576 362 169 15 0 chr4 129920946 129921011 -25709109 + MTC LTR MaLR 172 237 -184 1 1576 3032 32 3 0 chr4 129921042 129921387 -25708733 + ORR1A0 LTR MaLR 1 346 0 1 1576 778 218 92 10 chr4 129921419 129921614 -25708506 + MTC LTR MaLR 211 421 0 1 1576 459 0 0 0 chr4 129921835 129921886 -25708234 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1576 411 21 0 0 chr4 129921997 129922045 -25708075 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1576 236 282 35 23 chr4 129922045 129922085 -25708035 + (CCTG)n Simple_repeat Simple_repeat 1 40 0 1 1576 3900 154 63 3 chr4 129922085 129922735 -25707385 - RLTR17 LTR ERVK 0 692 4 1 1576 236 282 35 23 chr4 129922735 129922868 -25707252 + (CCTG)n Simple_repeat Simple_repeat 1 136 0 1 1576 339 25 0 0 chr4 129922890 129922930 -25707190 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1576 318 50 0 0 chr4 129922930 129922970 -25707150 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1576 581 189 6 19 chr4 129924333 129924495 -25705625 + CT-rich Low_complexity Low_complexity 3 162 0 1 1576 1123 236 0 0 chr4 129924495 129924703 -25705417 - ID_B1 SINE B4 -15 209 2 1 1576 1291 182 14 0 chr4 129924737 129924946 -25705174 - B3 SINE B2 -3 213 2 1 1576 1406 226 88 35 chr4 129924954 129925294 -25704826 + RCHARR1 DNA MER1_type 8 365 -609 1 1576 1148 240 30 30 chr4 129925267 129925568 -25704552 + RCHARR1 DNA MER1_type 557 857 -117 1 1576 1261 81 29 0 chr4 129925570 129925742 -25704378 + B2_Mm2 SINE B2 5 181 -14 1 1576 302 70 473 10 chr4 129925793 129925895 -25704225 + B2_Mm2 SINE B2 47 195 0 1 1576 22 56 0 0 chr4 129926252 129926288 -25703832 + AT_rich Low_complexity Low_complexity 1 36 0 1 1576 648 227 94 0 chr4 129926288 129926416 -25703704 + B1_Mur3 SINE Alu 1 140 -9 1 1576 2782 123 156 26 chr4 129926727 129927227 -25702893 - RLTR12A LTR ERVK -3 565 1 1 1576 890 239 6 11 chr4 129927293 129927475 -25702645 + ORR1D1 LTR MaLR 1 181 -193 1 1576 517 134 50 13 chr4 129927483 129927642 -25702478 + (TCTG)n Simple_repeat Simple_repeat 4 168 0 1 1576 795 224 72 39 chr4 129927644 129927905 -25702215 + ORR1C2 LTR MaLR 68 384 0 1 1576 230 278 40 73 chr4 129927996 129928120 -25702000 - MLT1J LTR MaLR -115 397 278 1 1576 765 93 214 87 chr4 129928255 129928521 -25701599 - ORR1A4 LTR MaLR -6 323 32 1 1576 206 121 0 0 chr4 129929364 129929397 -25700723 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1576 509 128 327 35 chr4 129929399 129929512 -25700608 - B1_Mus2 SINE Alu 0 147 2 1 1576 762 216 29 0 chr4 129931570 129931709 -25698411 + ID_B1 SINE B4 82 224 0 1 1576 368 283 11 11 chr4 129931727 129931820 -25698300 + PB1D10 SINE Alu 12 104 -13 1 1576 762 178 82 0 chr4 129932088 129932223 -25697897 - B1_Mur4 SINE Alu -3 147 2 1 1576 1436 62 0 67 chr4 129933134 129933343 -25696777 + B2_Mm2 SINE B2 1 195 0 1 1576 1539 240 42 54 chr4 129933372 129933778 -25696342 + MTD LTR MaLR 4 404 -15 1 1576 375 121 0 0 chr4 129933873 129933931 -25696189 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1 1576 705 294 64 60 chr4 129933932 129934182 -25695938 - B4A SINE B4 0 292 42 1 1576 592 180 51 66 chr4 129934179 129934316 -25695804 - B1F SINE Alu -2 147 13 1 1576 256 307 27 82 chr4 129934270 129934380 -25695740 - B4A SINE B4 -149 143 40 1 1576 204 267 0 0 chr4 129934384 129934429 -25695691 + G-rich Low_complexity Low_complexity 1 45 0 1 1576 307 243 42 14 chr4 129934516 129934587 -25695533 + RSINE1 SINE B4 10 82 -83 1 1576 780 68 0 0 chr4 129934683 129934786 -25695334 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1 1576 1001 163 197 0 chr4 129934790 129934968 -25695152 - B3 SINE B2 -1 215 3 1 1576 365 241 2 14 chr4 129935086 129935179 -25694941 + RSINE1 SINE B4 1 87 -205 1 1576 867 224 287 4 chr4 129935177 129935409 -25694711 + MTD LTR MaLR 108 405 -14 1 1576 311 0 0 25 chr4 129935805 129935845 -25694275 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 1 1576 265 234 234 0 chr4 129936462 129936556 -25693564 + MIR SINE MIR 25 140 -122 1 1576 228 86 0 0 chr4 129936558 129936593 -25693527 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1576 262 301 12 0 chr4 129936611 129936694 -25693426 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1576 211 196 0 0 chr4 129936669 129936715 -25693405 + GA-rich Low_complexity Low_complexity 1 46 0 1 1576 402 253 0 0 chr4 129936715 129936873 -25693247 + (TG)n Simple_repeat Simple_repeat 2 159 0 1 1576 693 267 161 16 chr4 129936893 129937148 -25692972 - B4 SINE B4 0 292 1 1 1576 928 109 11 4 chr4 129937714 129937860 -25692260 + B2_Mm2 SINE B2 2 155 -61 1 1576 870 139 97 63 chr4 129938314 129938521 -25691599 + B3 SINE B2 2 215 -1 1 1576 1404 66 11 0 chr4 129938661 129938842 -25691278 + B2_Mm1t SINE B2 2 184 -9 1 1576 302 305 34 132 chr4 129938927 129938961 -25691159 - B4 SINE B4 -40 252 140 1 1576 791 151 33 80 chr4 129938961 129939112 -25691008 - B1_Mur3 SINE Alu -3 146 3 1 1576 302 305 34 132 chr4 129939112 129939131 -25690989 - B4 SINE B4 -40 139 69 1 1576 506 309 6 32 chr4 129939124 129939266 -25690854 - ID_B1 SINE B4 -6 218 81 1 1576 516 32 0 0 chr4 129939266 129939328 -25690792 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1576 506 309 6 32 chr4 129939328 129939342 -25690778 - ID SINE ID -144 80 67 1 1576 550 273 14 70 chr4 129939333 129939475 -25690645 - RSINE1 SINE B4 -7 158 25 1 1576 916 259 21 33 chr4 129939492 129939735 -25690385 + MTD LTR MaLR 19 258 -161 1 1576 632 158 168 30 chr4 129939763 129939894 -25690226 - B1_Mur3 SINE Alu 0 149 1 1 1576 330 244 98 57 chr4 129941054 129941176 -25688944 + MIRc SINE MIR 21 147 -121 1 1576 421 240 275 28 chr4 129941185 129941403 -25688717 + B4A SINE B4 1 272 -20 1 1576 230 248 129 50 chr4 129942903 129943043 -25687077 + L2a LINE L2 3275 3425 -1 1 1576 488 235 119 15 chr4 129945295 129945429 -25684691 + B1_Mur1 SINE Alu 2 149 0 1 1576 263 253 50 59 chr4 129945431 129945442 -25684678 + B1F SINE Alu 44 143 -6 1 1576 336 259 22 11 chr4 129945442 129945532 -25684588 + ID_B1 SINE B4 128 218 -6 1 1576 606 12 36 0 chr4 129945873 129945956 -25684164 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1576 292 329 70 19 chr4 129945966 129946043 -25684077 + L1MB3 LINE L1 5749 5823 -360 1 1576 309 281 125 10 chr4 129946043 129946147 -25683973 + PB1D10 SINE Alu 1 116 -1 1 1576 292 329 70 19 chr4 129946147 129946227 -25683893 + L1MB3 LINE L1 5824 5914 -269 1 1576 249 250 36 95 chr4 129946422 129946506 -25683614 + PB1D9 SINE Alu 40 118 -2 1 1576 718 205 216 0 chr4 129946554 129946725 -25683395 + ID_B1 SINE B4 1 208 -16 1 1576 209 211 0 17 chr4 129946764 129946822 -25683298 + GA-rich Low_complexity Low_complexity 1 57 0 1 1576 661 284 27 45 chr4 129946874 129947095 -25683025 + ID_B1 SINE B4 7 223 -1 1 1576 216 291 11 34 chr4 129947100 129947170 -25682950 + GA-rich Low_complexity Low_complexity 5 73 0 1 1576 1410 90 26 0 chr4 129947170 129947359 -25682761 + B2_Mm2 SINE B2 2 195 0 1 1576 216 291 11 34 chr4 129947359 129947377 -25682743 + polypurine Low_complexity Low_complexity 74 91 0 1 1576 539 0 30 0 chr4 129947759 129947825 -25682295 + (ATATG)n Simple_repeat Simple_repeat 1 68 0 1 1576 196 147 29 0 chr4 129948023 129948057 -25682063 + MIRm SINE MIR 117 151 -125 1 1576 638 242 82 71 chr4 129948603 129948644 -25681476 + B4A SINE B4 1 38 -254 1 1576 1437 67 5 30 chr4 129948644 129948843 -25681277 + B2_Mm2 SINE B2 1 194 -1 1 1576 638 242 82 71 chr4 129948843 129949068 -25681052 + B4A SINE B4 39 270 -22 1 1576 976 136 0 7 chr4 129949379 129949520 -25680600 - B1_Mus1 SINE Alu -7 141 2 1 1576 667 244 8 0 chr4 129949524 129949655 -25680465 - ID_B1 SINE B4 -87 137 6 1 1576 1461 254 28 8 chr4 129949730 129950091 -25680029 + MTE2b LTR MaLR 4 371 -8 1 1576 341 319 69 48 chr4 129950421 129950512 -25679608 - B1F SINE Alu -1 148 54 1 1576 1406 98 0 25 chr4 129950512 129950711 -25679409 - B2_Mm2 SINE B2 -1 194 1 1 1576 341 319 69 48 chr4 129950711 129950764 -25679356 - B1F SINE Alu -96 53 1 1 1576 805 223 27 11 chr4 129950770 129950968 -25679152 - B3 SINE B2 -10 185 1 1 1576 207 167 0 0 chr4 129951443 129951485 -25678635 + CT-rich Low_complexity Low_complexity 1 42 0 1 1576 976 208 82 5 chr4 129953202 129953410 -25676710 + ID_B1 SINE B4 1 224 0 1 1576 212 274 137 0 chr4 129953436 129953509 -25676611 + MIR SINE MIR 94 176 -86 1 1576 369 0 0 0 chr4 129953641 129953682 -25676438 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1576 465 92 0 0 chr4 129953682 129953758 -25676362 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1576 308 164 18 18 chr4 129953763 129953875 -25676245 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 1576 201 197 0 0 chr4 129953918 129953984 -25676136 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1576 419 0 20 0 chr4 129954791 129954842 -25675278 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1576 351 0 0 0 chr4 129954842 129954880 -25675240 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1576 762 185 0 8 chr4 129955336 129955467 -25674653 - B1_Mur3 SINE Alu -10 139 10 1 1576 280 317 11 27 chr4 129955652 129955765 -25674355 + MIRc SINE MIR 62 176 -92 1 1576 306 186 3 66 chr4 129955804 129955884 -25674236 + B1_Mur4 SINE Alu 39 148 -2 1 1576 182 128 0 25 chr4 129955885 129955925 -25674195 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1576 205 255 20 0 chr4 129956051 129956102 -25674018 + MIRc SINE MIR 75 126 -142 1 1576 462 257 9 35 chr4 129956923 129957036 -25673084 + PB1D7 SINE Alu 5 114 -6 1 1576 890 101 14 0 chr4 129957042 129957181 -25672939 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 1 1576 232 341 24 0 chr4 129957181 129957263 -25672857 + GA-rich Low_complexity Low_complexity 1 84 0 1 1576 1103 71 29 0 chr4 129957269 129957439 -25672681 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 1 1576 249 304 13 0 chr4 129958117 129958196 -25671924 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 1 1576 437 288 83 0 chr4 129958298 129958430 -25671690 - B1F SINE Alu -2 147 5 1 1576 249 185 0 36 chr4 129958437 129958493 -25671627 + L1ME2z LINE L1 6380 6433 -11 1 1576 649 243 66 0 chr4 129958501 129958637 -25671483 + RSINE1 SINE B4 2 146 -19 1 1576 1168 98 0 0 chr4 129958742 129958906 -25671214 + B2_Mm2 SINE B2 1 164 -31 1 1576 187 356 20 75 chr4 129959511 129959657 -25670463 + MIR3 SINE MIR 15 152 -56 1 1576 663 250 8 0 chr4 129959659 129959791 -25670329 + RSINE1 SINE B4 4 136 -29 1 1576 864 37 0 0 chr4 129959796 129959904 -25670216 + (GAA)n Simple_repeat Simple_repeat 3 110 0 1 1576 690 62 0 0 chr4 129959907 129960003 -25670117 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 1 1576 234 268 21 104 chr4 129960004 129960100 -25670020 + MT2B2 LTR ERVL 157 244 -340 1 1576 429 217 138 9 chr4 129960030 129960146 -25669974 + B1F SINE Alu 18 148 -1 1 1576 505 255 196 41 chr4 129960773 129961018 -25669102 + B4A SINE B4 1 283 -9 1 1576 626 172 49 8 chr4 129961083 129961206 -25668914 + B1_Mur2 SINE Alu 1 128 -21 1 1576 409 254 111 0 chr4 129961236 129961362 -25668758 + L1M2 LINE L1 5482 5621 -670 1 1576 270 282 87 41 chr4 129961366 129961562 -25668558 + Lx7 LINE L1 5976 6180 -1516 1 1576 306 87 0 0 chr4 129961562 129961608 -25668512 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1576 276 254 0 0 chr4 129961610 129961673 -25668447 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 1 1576 538 309 159 28 chr4 129961673 129962042 -25668078 + Lx8 LINE L1 6182 6589 -1055 1 1576 358 284 117 5 chr4 129962214 129962502 -25667618 - L1MB5 LINE L1 -290 5884 5555 1 1576 234 250 62 0 chr4 129962551 129962574 -25667546 - B1_Mur4 SINE Alu -40 110 87 1 1576 1517 54 0 11 chr4 129962574 129962762 -25667358 - B2_Mm2 SINE B2 -9 186 1 1 1576 249 225 11 41 chr4 129962762 129962841 -25667279 - B1F2 SINE Alu -64 86 5 1 1576 210 301 13 40 chr4 129962775 129962851 -25667269 - B4 SINE B4 -140 152 79 1 1576 420 267 140 24 chr4 129962883 129963090 -25667030 - B4A SINE B4 -14 278 48 1 1576 370 235 20 20 chr4 129963143 129963243 -25666877 + PB1D10 SINE Alu 17 116 -1 1 1576 379 277 9 26 chr4 129963318 129963433 -25666687 + PB1D10 SINE Alu 3 115 -2 1 1576 878 121 23 11 chr4 129963434 129963609 -25666511 + GA-rich Low_complexity Low_complexity 1 177 0 1 1576 1270 57 6 11 chr4 129963610 129963787 -25666333 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1576 214 206 16 16 chr4 129963787 129963851 -25666269 + GA-rich Low_complexity Low_complexity 1 64 0 1 1576 486 114 0 0 chr4 129964315 129964394 -25665726 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 1 1576 259 292 0 30 chr4 129964414 129964481 -25665639 + polypurine Low_complexity Low_complexity 1 65 0 1 1576 397 188 144 10 chr4 129965323 129965420 -25664700 - B4A SINE B4 -56 236 127 1 1576 243 0 0 0 chr4 129965452 129965479 -25664641 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1576 306 220 32 70 chr4 129965564 129965750 -25664370 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 1 1576 348 256 7 25 chr4 129965780 129965908 -25664212 - B4A SINE B4 -37 128 1 1 1576 531 0 0 0 chr4 129965940 129965999 -25664121 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1576 724 211 28 0 chr4 129965999 129966141 -25663979 - B3A SINE B2 -50 148 3 1 1576 381 93 0 0 chr4 129966165 129966219 -25663901 + (TCC)n Simple_repeat Simple_repeat 2 55 0 1 1576 433 243 67 52 chr4 129966220 129966253 -25663867 - ID_B1 SINE B4 -46 246 139 1 1576 726 105 17 9 chr4 129966253 129966368 -25663752 - B1_Mur4 SINE Alu -25 125 10 1 1576 433 243 67 52 chr4 129966368 129966385 -25663735 - ID_B1 SINE B4 -46 138 76 1 1576 360 271 60 46 chr4 129966385 129966536 -25663584 - L1MC LINE L1 -2913 3233 3081 1 1576 575 264 42 57 chr4 129966567 129966760 -25663360 + B3 SINE B2 18 207 -9 1 1576 268 295 0 0 chr4 129966757 129966818 -25663302 - B3A SINE B2 -137 61 1 1 1576 291 114 0 0 chr4 129966843 129966887 -25663233 + (TCC)n Simple_repeat Simple_repeat 3 46 0 1 1576 531 31 0 0 chr4 129966915 129966980 -25663140 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1576 556 319 12 6 chr4 129966981 129967151 -25662969 - B3A SINE B2 -27 171 1 1 1576 522 316 33 7 chr4 129967195 129967348 -25662772 - RSINE1 SINE B4 0 165 9 1 1576 355 275 0 92 chr4 129967364 129967404 -25662716 - PB1D10 SINE Alu -8 109 75 1 1576 1705 26 0 0 chr4 129967404 129967594 -25662526 - B2_Mm1a SINE B2 -2 191 2 1 1576 355 275 0 92 chr4 129967594 129967673 -25662447 - PB1D10 SINE Alu -43 74 1 1 1576 180 0 0 0 chr4 129967708 129967728 -25662392 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1576 594 276 0 27 chr4 129967761 129967910 -25662210 + B1F1 SINE Alu 4 148 -1 1 1576 385 316 29 7 chr4 129967929 129968066 -25662054 + B1F SINE Alu 1 140 -9 1 1576 533 265 53 8 chr4 129968081 129968214 -25661906 + ID_B1 SINE B4 86 224 0 1 1576 942 262 5 5 chr4 129968246 129968453 -25661667 + B3 SINE B2 2 208 -8 1 1576 780 247 0 57 chr4 129968559 129968769 -25661351 + B3A SINE B2 1 198 0 1 1576 222 174 0 0 chr4 129969079 129969125 -25660995 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1 1576 248 295 248 0 chr4 129969125 129969143 -25660977 - B3 SINE B2 -34 182 165 1 1576 633 115 0 0 chr4 129969143 129969239 -25660881 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1576 248 295 248 0 chr4 129969239 129969325 -25660795 - B3 SINE B2 -52 164 53 1 1576 367 200 138 5 chr4 129969276 129969392 -25660728 - B1_Mur4 SINE Alu -15 134 8 1 1576 201 266 32 0 chr4 129969618 129969694 -25660426 + MIR SINE MIR 36 114 -154 1 1576 605 232 0 69 chr4 129970191 129970282 -25659838 + B1_Mur1 SINE Alu 2 91 -58 1 1576 1171 154 119 0 chr4 129970282 129970483 -25659637 - URR1B DNA MER1_type 0 225 1 1 1576 605 220 0 70 chr4 129970483 129970549 -25659571 + B1_Mur1 SINE Alu 92 149 0 1 1576 239 173 19 0 chr4 129970558 129970610 -25659510 + G-rich Low_complexity Low_complexity 5 57 0 1 1576 693 95 0 25 chr4 129970610 129970729 -25659391 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 1 1576 841 155 56 14 chr4 129970729 129970873 -25659247 + B1_Mur4 SINE Alu 1 150 0 1 1576 789 82 269 20 chr4 129970876 129971025 -25659095 + B2_Mm2 SINE B2 2 187 -8 1 1576 761 87 9 0 chr4 129971027 129971142 -25658978 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 1 1576 258 280 73 18 chr4 129971172 129971281 -25658839 - B4 SINE B4 -13 279 165 1 1576 901 152 7 0 chr4 129971354 129971499 -25658621 - B1_Mur4 SINE Alu 0 150 5 1 1576 1345 102 32 0 chr4 129971513 129971699 -25658421 - B2_Mm1t SINE B2 0 193 2 1 1576 210 260 98 61 chr4 129971717 129971799 -25658321 - B4 SINE B4 -206 86 2 1 1576 397 274 73 15 chr4 129971935 129972072 -25658048 + B1F SINE Alu 5 149 0 1 1576 180 0 0 0 chr4 129972237 129972257 -25657863 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1576 464 248 17 0 chr4 129972918 129973035 -25657085 + B1_Mus1 SINE Alu 12 130 -18 1 1576 656 276 119 82 chr4 129973265 129973308 -25656812 - B4A SINE B4 -14 278 252 1 1576 926 193 62 29 chr4 129973308 129973516 -25656604 - B3 SINE B2 -1 215 1 1 1576 656 276 119 82 chr4 129973516 129973740 -25656380 - B4A SINE B4 -41 251 1 1 1576 427 338 68 77 chr4 129973762 129974127 -25655993 - RMER5 LTR ERV1 -10 524 163 1 1576 697 187 104 0 chr4 129974753 129974887 -25655233 - B1_Mur1 SINE Alu 0 149 2 1 1576 494 307 12 56 chr4 129975204 129975366 -25654754 - RSINE1 SINE B4 0 165 11 1 1576 923 207 113 10 chr4 129975399 129975594 -25654526 - B3 SINE B2 0 216 2 1 1576 321 89 0 0 chr4 129975613 129975658 -25654462 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1576 1502 78 0 5 chr4 129975724 129975917 -25654203 + B2_Mm2 SINE B2 1 192 -3 1 1576 294 106 0 0 chr4 129976409 129976456 -25653664 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1576 297 0 0 0 chr4 129976467 129976500 -25653620 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1576 710 167 141 16 chr4 129977569 129977697 -25652423 - B1_Mur1 SINE Alu -1 148 5 1 1576 1412 256 219 10 chr4 129977773 129978267 -25651853 - Lx8 LINE L1 -11 7462 6866 1 1576 575 240 26 58 chr4 129978666 129978821 -25651299 + RSINE1 SINE B4 12 161 -4 1 1576 536 241 116 14 chr4 129978907 129979054 -25651066 - RSINE1 SINE B4 -2 163 2 1 1576 210 118 0 0 chr4 129979056 129979090 -25651030 + (GAA)n Simple_repeat Simple_repeat 2 35 0 1 1576 338 291 264 10 chr4 129979678 129979884 -25650236 + RMER5 LTR ERV1 22 279 -255 1 1576 189 0 0 0 chr4 129980417 129980438 -25649682 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1576 1231 42 0 0 chr4 129980438 129980582 -25649538 - B1_Mm SINE Alu -3 144 1 1 1576 799 170 214 59 chr4 129980595 129980782 -25649338 - B3 SINE B2 0 216 1 1 1576 1215 35 21 0 chr4 129981243 129981386 -25648734 - B1_Mm SINE Alu -1 146 1 1 1576 297 308 0 0 chr4 129981630 129981695 -25648425 - ID4 SINE ID -14 69 5 1 1576 335 206 25 12 chr4 129982473 129982567 -25647553 + B1F SINE Alu 25 140 -9 1 1576 243 0 0 0 chr4 129982570 129982597 -25647523 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1576 235 226 0 36 chr4 129982606 129982661 -25647459 + ID4 SINE ID 2 54 -29 1 1576 444 288 26 58 chr4 129982656 129982811 -25647309 + RSINE1 SINE B4 16 165 0 1 1576 233 158 140 0 chr4 129983042 129983099 -25647021 - B4A SINE B4 -25 267 203 1 1576 222 115 47 0 chr4 129983079 129983127 -25646993 - PB1D9 SINE Alu -5 144 79 1 1576 639 232 132 55 chr4 129983166 129983385 -25646735 - B4A SINE B4 -46 246 11 1 1576 305 239 0 86 chr4 129983415 129983520 -25646600 + ID_B1 SINE B4 81 176 -48 1 1576 612 121 195 17 chr4 129983426 129983544 -25646576 + B1_Mus1 SINE Alu 10 148 0 1 1576 437 148 0 12 chr4 129983544 129983626 -25646494 + GA-rich Low_complexity Low_complexity 1 81 0 1 1576 417 204 17 100 chr4 129983632 129983752 -25646368 + MT2B LTR ERVL 155 264 -337 1 1576 772 180 14 0 chr4 129983648 129983787 -25646333 + B1_Mur2 SINE Alu 9 149 0 1 1576 289 265 38 38 chr4 129983851 129983957 -25646163 - MIRm SINE MIR -125 151 46 1 1576 308 263 95 0 chr4 129984707 129984802 -25645318 + PB1D10 SINE Alu 1 104 -13 1 1576 205 213 21 0 chr4 129984847 129984894 -25645226 + MIRb SINE MIR 120 167 -101 1 1576 547 273 0 58 chr4 129985466 129985637 -25644483 + RSINE1 SINE B4 3 163 -2 1 1576 201 74 0 0 chr4 129986250 129986277 -25643843 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 1 1576 692 114 44 36 chr4 129986902 129987039 -25643081 + B1_Mus1 SINE Alu 10 147 -1 1 1576 192 40 0 0 chr4 129987181 129987206 -25642914 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1576 295 219 0 45 chr4 129987623 129987690 -25642430 - ID4_ SINE ID -15 68 5 1 1576 474 216 192 0 chr4 129987745 129987870 -25642250 - B1_Mur2 SINE Alu 0 149 1 1 1576 520 197 104 52 chr4 129988416 129988550 -25641570 - B1F SINE Alu -7 142 2 1 1576 210 214 182 32 chr4 129992210 129992351 -25637769 + MIRb SINE MIR 94 257 -5 1 1576 186 215 88 44 chr4 129992857 129992925 -25637195 + L4 LINE RTE 1803 1873 -156 1 1576 237 83 0 0 chr4 129993902 129993938 -25636182 + (TTC)n Simple_repeat Simple_repeat 2 37 0 1 1576 247 234 12 47 chr4 129994240 129994325 -25635795 + PB1D9 SINE Alu 3 84 -36 1 1576 258 152 0 0 chr4 129994433 129994492 -25635628 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 1 1576 302 239 0 56 chr4 129994526 129994597 -25635523 - B3A SINE B2 -75 123 57 1 1576 756 141 88 15 chr4 129994665 129994802 -25635318 - B1_Mus1 SINE Alu -1 147 1 1 1576 465 176 43 11 chr4 129994810 129994902 -25635218 + B1_Mur2 SINE Alu 50 144 -5 1 1576 518 198 37 9 chr4 129994969 129995076 -25635044 - PB1D10 SINE Alu -7 110 1 1 1576 362 281 122 7 chr4 129995128 129995275 -25634845 - RSINE1 SINE B4 0 165 2 1 1576 304 292 112 31 chr4 129995921 129996118 -25634002 + MIRb SINE MIR 10 216 -46 1 1576 248 315 0 0 chr4 129996414 129996468 -25633652 - ID SINE ID -148 76 23 1 1576 409 201 127 0 chr4 129996865 129996999 -25633121 - B1F1 SINE Alu 0 149 1 1 1576 347 344 69 97 chr4 129997109 129997316 -25632804 + L2a LINE L2 2320 2496 -923 1 1576 843 148 14 29 chr4 129997316 129997455 -25632665 - B1_Mur4 SINE Alu -13 137 1 1 1576 347 344 69 97 chr4 129997455 129997752 -25632368 + L2a LINE L2 2497 2810 -609 1 1576 515 181 21 0 chr4 129997753 129997847 -25632273 + B1_Mur1 SINE Alu 40 135 -14 1 1576 229 237 172 17 chr4 129998070 129998082 -25632038 - ID_B1 SINE B4 0 224 213 1 1576 1167 56 28 0 chr4 129998082 129998226 -25631894 - B1_Mus1 SINE Alu 0 148 1 1 1576 229 237 172 17 chr4 129998226 129998329 -25631791 - ID_B1 SINE B4 -12 212 92 1 1576 410 191 98 13 chr4 129998234 129998340 -25631780 - PB1D10 SINE Alu -5 115 1 1 1576 361 176 108 0 chr4 129998388 129998462 -25631658 + ID4 SINE ID 2 83 0 1 1576 190 344 128 6 chr4 129998471 129998635 -25631485 + L2a LINE L2 3224 3407 -19 1 1576 279 337 12 0 chr4 129998944 129999027 -25631093 + ID_B1 SINE B4 77 160 -64 1 1576 435 312 18 30 chr4 129999080 129999245 -25630875 + RSINE1 SINE B4 2 164 -1 1 1576 516 167 73 0 chr4 130000147 130000243 -25629877 + PB1D9 SINE Alu 18 120 0 1 1576 243 205 34 57 chr4 130000394 130000482 -25629638 + PB1D10 SINE Alu 32 117 0 2 1576 398 139 0 14 chr4 130000482 130000555 -25629565 + GA-rich Low_complexity Low_complexity 3 74 0 3 1576 716 193 193 0 chr4 130000685 130000866 -25629254 + B3 SINE B2 1 216 0 4 1576 478 214 31 0 chr4 130000936 130001034 -25629086 + ID_B1 SINE B4 118 218 -6 5 1576 326 295 26 9 chr4 130001441 130001554 -25628566 + PB1D7 SINE Alu 5 119 -1 6 1576 616 162 29 51 chr4 130001563 130001700 -25628420 + B1_Mur1 SINE Alu 1 134 -15 7 1576 189 107 0 0 chr4 130001728 130001756 -25628364 + (CAGAA)n Simple_repeat Simple_repeat 4 31 0 8 1576 785 192 83 22 chr4 130002010 130002191 -25627929 - B3A SINE B2 -6 192 1 9 1576 288 143 27 137 chr4 130002252 130002325 -25627795 - PB1D9 SINE Alu -2 118 54 1 1576 488 241 22 8 chr4 130002360 130002494 -25627626 - B1F SINE Alu -13 136 1 1 1576 547 257 78 47 chr4 130002527 130002719 -25627401 - B3A SINE B2 0 198 1 1 1576 1057 201 15 20 chr4 130002741 130002944 -25627176 - B3 SINE B2 0 216 15 1 1576 543 182 0 29 chr4 130003078 130003180 -25626940 + ID_B1 SINE B4 123 221 -3 1 1576 288 0 0 0 chr4 130003182 130003214 -25626906 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1 1576 1325 96 26 16 chr4 130003265 130003456 -25626664 - B2_Mm2 SINE B2 -2 193 1 1 1576 592 135 0 0 chr4 130003466 130003555 -25626565 - B1_Mur4 SINE Alu -7 143 55 1 1576 924 159 36 31 chr4 130003613 130003807 -25626313 + B2_Mm2 SINE B2 1 195 0 1 1576 1412 57 23 0 chr4 130003937 130004112 -25626008 + B2_Mm2 SINE B2 1 179 -16 1 1576 183 42 0 0 chr4 130004115 130004139 -25625981 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1576 1241 48 0 0 chr4 130004184 130004331 -25625789 - B1_Mus2 SINE Alu 0 147 1 2 1576 279 296 111 19 chr4 130005035 130005197 -25624923 - MIR3 SINE MIR -7 201 25 2 1576 321 190 48 60 chr4 130005400 130005484 -25624636 - B3A SINE B2 -43 173 91 2 1576 836 148 0 23 chr4 130005713 130005844 -25624276 + B3 SINE B2 3 130 -86 2 1576 180 0 0 0 chr4 130005884 130005904 -25624216 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1576 462 161 72 24 chr4 130005965 130006131 -25623989 + RMER17C LTR ERVK 102 275 -135 2 1576 1343 80 5 11 chr4 130006146 130006335 -25623785 + B2_Mm2 SINE B2 2 189 -6 2 1576 1002 128 0 0 chr4 130007174 130007315 -25622805 + B1_Mus1 SINE Alu 2 142 -6 2 1576 203 147 0 0 chr4 130007315 130007349 -25622771 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1576 350 284 20 0 chr4 130007915 130008017 -25622103 + PB1D10 SINE Alu 14 117 0 3 1576 334 246 0 0 chr4 130008161 130008230 -25621890 - L1ME3A LINE L1 -307 5866 5798 3 1576 254 213 71 7 chr4 130008249 130008318 -25621802 - B1_Mur4 SINE Alu -65 85 6 3 1576 2164 151 70 0 chr4 130008376 130008773 -25621347 + RMER1B Other Other 642 1066 0 3 1576 1002 204 24 9 chr4 130008801 130009014 -25621106 + B3 SINE B2 1 216 0 3 1576 356 238 12 0 chr4 130009267 130009351 -25620769 + MER3 DNA MER1_type 125 209 0 3 1576 292 224 0 33 chr4 130009856 130009916 -25620204 + ID4_ SINE ID 26 83 0 3 1576 530 175 26 0 chr4 130010121 130010235 -25619885 + B1_Mur1 SINE Alu 32 148 -1 3 1576 354 236 325 0 chr4 130010879 130011002 -25619118 - RSINE1 SINE B4 0 165 3 3 1576 1985 177 153 33 chr4 130011091 130011600 -25618520 + RMER1B Other Other 496 1065 -1 3 1576 793 176 0 92 chr4 130011609 130011623 -25618497 + B1_Mus1 SINE Alu 1 14 -134 4 1576 2878 69 47 11 chr4 130011623 130012005 -25618115 + MTA_Mm LTR MaLR 1 396 0 4 1576 793 176 0 92 chr4 130012005 130012153 -25617967 + B1_Mus1 SINE Alu 15 148 0 4 1576 554 93 12 0 chr4 130012155 130012241 -25617879 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 1576 478 272 9 9 chr4 130012921 130013036 -25617084 - PB1D10 SINE Alu -2 115 1 4 1576 268 242 146 39 chr4 130013186 130013289 -25616831 - RSINE1 SINE B4 -34 131 18 4 1576 512 223 8 55 chr4 130013345 130013473 -25616647 + B1_Mur4 SINE Alu 27 148 -2 4 1576 327 130 0 0 chr4 130013473 130013527 -25616593 + (CAA)n Simple_repeat Simple_repeat 1 54 0 4 1576 282 300 12 24 chr4 130013641 130013723 -25616397 + RSINE1 SINE B4 28 108 -57 4 1576 21 36 0 0 chr4 130013752 130013780 -25616340 + AT_rich Low_complexity Low_complexity 1 28 0 4 1576 522 0 0 0 chr4 130014446 130014504 -25615616 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1576 679 261 123 27 chr4 130014522 130014782 -25615338 - B4 SINE B4 -7 285 1 5 1576 770 233 14 0 chr4 130014982 130015128 -25614992 + RSINE1 SINE B4 2 149 -16 5 1576 281 319 4 0 chr4 130015129 130015218 -25614902 - B1F1 SINE Alu -59 90 1 5 1576 954 221 56 0 chr4 130016006 130016201 -25613919 - B3 SINE B2 -6 210 5 5 1576 247 333 12 12 chr4 130016369 130016451 -25613669 - ID4_ SINE ID -1 82 1 5 1576 942 190 11 0 chr4 130016494 130016673 -25613447 - B3A SINE B2 -17 181 1 5 1576 458 237 26 0 chr4 130016964 130017078 -25613042 + PB1D9 SINE Alu 4 120 0 5 1576 270 128 0 0 chr4 130017099 130017138 -25612982 + B2_Mm2 SINE B2 1 39 -156 5 1576 833 221 84 15 chr4 130017141 130017343 -25612777 + B3 SINE B2 1 216 0 5 1576 899 170 70 6 chr4 130017342 130017514 -25612606 + B3 SINE B2 27 209 -7 5 1576 542 250 45 8 chr4 130017548 130017681 -25612439 + B1F SINE Alu 12 149 0 6 1576 1484 73 5 0 chr4 130017931 130018123 -25611997 - B2_Mm1t SINE B2 0 193 1 6 1576 451 209 102 27 chr4 130018356 130018484 -25611636 + B1_Mur1 SINE Alu 2 148 -1 6 1576 253 170 83 83 chr4 130018492 130018521 -25611599 + RLTR25B LTR ERVK 401 428 -600 6 1576 1607 42 0 16 chr4 130018521 130018715 -25611405 + B2_Mm1a SINE B2 3 193 0 6 1576 305 143 17 35 chr4 130018724 130018782 -25611338 + 4.5SRNA scRNA scRNA 33 89 -5 6 1576 701 113 0 0 chr4 130018730 130018836 -25611284 + B1_Mus2 SINE Alu 41 146 -1 6 1576 253 170 83 83 chr4 130018782 130018794 -25611326 + RLTR25B LTR ERVK 459 508 -520 6 1576 263 317 78 19 chr4 130019421 130019524 -25610596 - PB1 SINE Alu -12 115 7 6 1576 1047 154 154 13 chr4 130019802 130020075 -25610045 + MTD LTR MaLR 1 360 -59 6 1576 567 159 17 26 chr4 130020086 130020202 -25609918 + B1_Mur4 SINE Alu 35 149 -1 6 1576 323 312 73 0 chr4 130020308 130020417 -25609703 - PB1D10 SINE Alu 0 117 1 7 1576 405 0 0 0 chr4 130020447 130020492 -25609628 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1576 985 53 15 8 chr4 130020739 130020871 -25609249 - B1_Mus1 SINE Alu 0 148 16 7 1576 397 212 59 114 chr4 130020773 130020965 -25609155 - MT2B LTR ERVL -320 264 64 7 1576 351 0 0 0 chr4 130021141 130021180 -25608940 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1576 386 256 43 86 chr4 130021537 130021701 -25608419 - MIRc SINE MIR -96 166 11 7 1576 355 299 124 7 chr4 130022052 130022197 -25607923 + B4 SINE B4 11 172 -120 7 1576 352 167 33 0 chr4 130022226 130022286 -25607834 + RSINE1 SINE B4 83 144 -21 7 1576 278 274 115 64 chr4 130022500 130022656 -25607464 + MER21B LTR ERV1 359 522 -341 7 1576 837 197 14 0 chr4 130022669 130022816 -25607304 - B1_Mur1 SINE Alu 0 149 1 7 1576 631 268 16 0 chr4 130022817 130022944 -25607176 - ID_B1 SINE B4 0 224 96 8 1576 353 257 50 58 chr4 130023021 130023141 -25606979 + MER21B LTR ERV1 622 740 -123 7 1576 626 194 67 0 chr4 130023246 130023380 -25606740 + RSINE1 SINE B4 3 145 -20 8 24 212 330 81 54 chr4 130023380 130023432 -25606688 + B2_Mm2 SINE B2 2 192 -3 8 1577 378 293 49 76 chr4 130024417 130024463 -25605657 - PB1D9 SINE Alu 0 149 100 8 1577 3064 74 13 3 chr4 130024463 130024855 -25605265 + MTA_Mm LTR MaLR 1 396 0 8 1577 378 300 0 68 chr4 130024855 130024952 -25605168 - PB1D9 SINE Alu -21 99 10 8 1577 239 125 0 0 chr4 130024952 130024992 -25605128 + B3 SINE B2 1 40 -176 8 1577 1041 70 20 27 chr4 130024993 130025141 -25604979 + B1_Mus1 SINE Alu 2 148 0 8 1577 442 200 25 0 chr4 130025162 130025242 -25604878 + B2_Mm2 SINE B2 26 107 -88 8 1577 202 297 0 30 chr4 130025269 130025335 -25604785 + GA-rich Low_complexity Low_complexity 1 64 0 8 1577 578 242 23 8 chr4 130025405 130025534 -25604586 - RSINE1 SINE B4 -19 146 16 8 1577 247 301 61 17 chr4 130025536 130025651 -25604469 - PB1D9 SINE Alu 0 120 1 9 1577 445 264 84 148 chr4 130025820 130026118 -25604002 - B4A SINE B4 -13 279 1 9 1577 360 288 17 35 chr4 130026138 130026253 -25603867 - PB1D9 SINE Alu -7 113 1 9 1577 389 225 0 0 chr4 130026625 130026705 -25603415 - ID_B1 SINE B4 0 224 145 9 1577 337 279 38 9 chr4 130026705 130026730 -25603390 - B1F SINE Alu -1 148 41 9 1577 843 235 13 61 chr4 130026977 130027196 -25602924 + B3 SINE B2 8 216 0 9 1577 275 232 53 152 chr4 130027252 130027384 -25602736 + PB1D7 SINE Alu 1 119 -1 9 1577 319 268 11 11 chr4 130027388 130027475 -25602645 - MIR3 SINE MIR -46 162 76 9 1577 889 231 38 9 chr4 130027533 130027743 -25602377 - B3 SINE B2 0 216 1 9 1577 799 184 0 7 chr4 130028817 130028959 -25601161 + B1_Mur3 SINE Alu 9 149 0 9 1577 578 227 42 0 chr4 130029424 130029543 -25600577 - B1_Mur1 SINE Alu -1 148 25 1 1577 455 147 67 0 chr4 130029604 130029679 -25600441 - B1_Mus1 SINE Alu -49 99 20 1 1577 264 288 24 32 chr4 130029694 130029814 -25600306 - PB1D7 SINE Alu -1 119 7 1 1577 243 366 12 0 chr4 130029879 130029961 -25600159 + ID_B1 SINE B4 113 195 -29 1 1577 1823 166 77 14 chr4 130029950 130030299 -25599821 + MTD LTR MaLR 5 375 -44 1 1577 951 154 0 20 chr4 130030316 130030462 -25599658 + B1_Mur1 SINE Alu 2 144 -5 1 1577 461 286 7 26 chr4 130030538 130030689 -25599431 + B1F SINE Alu 2 149 0 1 1577 245 277 62 0 chr4 130030690 130030755 -25599365 + RSINE1 SINE B4 1 69 -96 1 1577 326 265 19 29 chr4 130030712 130030817 -25599303 - PB1D10 SINE Alu -13 104 1 1 1577 784 182 7 7 chr4 130030817 130030896 -25599224 - ID SINE ID -143 81 3 1 1577 428 238 175 0 chr4 130031552 130031678 -25598442 + B4A SINE B4 1 148 -144 1 1577 230 228 0 132 chr4 130031712 130031818 -25598302 + MT2B2 LTR ERVL 146 237 -347 1 1577 634 223 68 48 chr4 130031730 130031937 -25598183 + B4A SINE B4 80 290 -2 1 1577 271 154 61 49 chr4 130032002 130032084 -25598036 + ID4 SINE ID 1 83 0 1 1577 630 289 99 9 chr4 130032365 130032578 -25597542 - B4A SINE B4 -58 234 3 1 1577 511 221 0 34 chr4 130032590 130032707 -25597413 - PB1D10 SINE Alu -4 113 1 1 1577 236 226 57 0 chr4 130033081 130033134 -25596986 - L2b LINE L2 -16 3359 3304 1 1577 299 317 59 10 chr4 130033217 130033319 -25596801 + B1F SINE Alu 1 107 -42 1 1577 211 278 74 0 chr4 130033322 130033376 -25596744 + ID4 SINE ID 3 60 -23 1 1577 225 0 0 0 chr4 130033426 130033451 -25596669 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1577 699 78 0 0 chr4 130033451 130033553 -25596567 + (GA)n Simple_repeat Simple_repeat 2 104 0 1 1577 910 158 0 0 chr4 130033635 130033774 -25596346 + B1_Mus1 SINE Alu 1 139 -9 1 1577 249 254 15 31 chr4 130033785 130033850 -25596270 + RLTR25B LTR ERVK 435 498 -530 1 1577 500 214 0 0 chr4 130033794 130033878 -25596242 + B1_Mm SINE Alu 43 126 -21 1 1577 378 0 0 0 chr4 130033901 130033943 -25596177 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1577 658 243 14 22 chr4 130033950 130034089 -25596031 - B3A SINE B2 -57 141 4 1 1577 862 295 39 11 chr4 130034126 130034410 -25595710 + B4A SINE B4 1 292 0 1 1577 960 164 70 21 chr4 130034759 130034946 -25595174 + B3 SINE B2 18 213 -3 1 1577 518 208 34 28 chr4 130035003 130035131 -25594989 - B1_Mur2 SINE Alu -6 141 2 1 1577 267 282 32 96 chr4 130035048 130035142 -25594978 - MT2B LTR ERVL -362 239 152 1 1577 331 279 47 148 chr4 130035283 130035329 -25594791 + B4A SINE B4 2 40 -252 1 1577 1662 111 124 59 chr4 130035329 130035636 -25594484 + ORR1A2 LTR MaLR 1 327 0 1 1577 369 225 30 101 chr4 130035636 130035688 -25594432 + B3A SINE B2 43 93 -105 1 1577 331 279 47 148 chr4 130035688 130035727 -25594393 + B4A SINE B4 41 227 -60 1 1577 599 154 53 35 chr4 130035727 130035841 -25594279 + B1_Mur2 SINE Alu 34 149 0 1 1577 337 285 22 96 chr4 130035846 130035982 -25594138 - B1F SINE Alu -11 138 13 1 1577 188 309 139 11 chr4 130036308 130036488 -25593632 + L2b LINE L2 2949 3151 -224 1 1577 310 312 91 74 chr4 130038414 130038714 -25591406 + L2a LINE L2 2993 3295 -92 1 1577 791 247 11 21 chr4 130038717 130038742 -25591378 - B3A SINE B2 -8 190 170 1 1577 369 58 0 0 chr4 130038742 130038794 -25591326 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1577 791 247 11 21 chr4 130038794 130038958 -25591162 - B3A SINE B2 -29 169 4 1 1577 248 208 19 19 chr4 130039229 130039283 -25590837 + PB1D10 SINE Alu 53 106 -11 1 1577 186 263 0 0 chr4 130040222 130040279 -25589841 + CT-rich Low_complexity Low_complexity 5 61 0 1 1577 616 181 67 0 chr4 130040288 130040393 -25589727 - ID_B1 SINE B4 -22 202 91 1 1577 1439 65 5 11 chr4 130040410 130040597 -25589523 - B2_Mm2 SINE B2 -8 187 2 1 1577 556 181 0 0 chr4 130040652 130040746 -25589374 + B1_Mus2 SINE Alu 54 147 0 1 1577 969 157 197 0 chr4 130040764 130040942 -25589178 + B3 SINE B2 4 216 0 1 1577 475 231 111 0 chr4 130040976 130041084 -25589036 + B3 SINE B2 27 146 -70 1 1577 258 32 0 0 chr4 130041091 130041122 -25588998 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1577 1173 92 92 0 chr4 130041203 130041356 -25588764 + B2_Mm1a SINE B2 1 160 -33 1 1577 342 0 0 0 chr4 130041356 130041394 -25588726 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1577 1173 92 92 0 chr4 130041394 130041414 -25588706 + B2_Mm1a SINE B2 161 189 -4 1 1577 849 254 19 0 chr4 130041528 130041733 -25588387 + B3 SINE B2 1 209 -7 1 1577 664 312 37 91 chr4 130041739 130041918 -25588202 + B4 SINE B4 33 212 -80 1 1577 1100 69 0 7 chr4 130041918 130042064 -25588056 + B1_Mus2 SINE Alu 2 146 -1 1 1577 664 312 37 91 chr4 130042064 130042127 -25587993 + B4 SINE B4 213 262 -30 1 1577 246 322 46 0 chr4 130042538 130042625 -25587495 + B1F1 SINE Alu 6 96 -53 1 1577 1334 70 32 21 chr4 130042723 130042884 -25587236 + B2_Mm1a SINE B2 1 162 -31 1 1577 222 37 0 0 chr4 130042884 130042911 -25587209 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1577 1334 70 32 21 chr4 130042911 130042939 -25587181 + B2_Mm1a SINE B2 163 192 -1 1 1577 474 233 126 0 chr4 130042963 130043066 -25587054 + B1_Mus2 SINE Alu 2 117 -30 1 1577 21 36 0 0 chr4 130043224 130043252 -25586868 + AT_rich Low_complexity Low_complexity 1 28 0 1 1577 1344 96 5 26 chr4 130043265 130043458 -25586662 + B2_Mm1t SINE B2 5 193 0 1 1577 333 0 0 0 chr4 130043553 130043590 -25586530 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1577 234 250 21 0 chr4 130043667 130043715 -25586405 - RSINE1 SINE B4 -114 51 3 1 1577 295 191 29 87 chr4 130043877 130043893 -25586227 - RLTR25B LTR ERVK -491 537 514 1 1577 585 28 0 0 chr4 130043903 130043974 -25586146 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1577 295 191 29 87 chr4 130043974 130044050 -25586070 - RLTR25B LTR ERVK -515 513 442 1 1577 775 70 13 34 chr4 130044050 130044079 -25586041 - B1_Mus1 SINE Alu -33 115 1 1 1577 210 71 0 0 chr4 130044079 130044107 -25586013 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1577 466 256 196 26 chr4 130044118 130044307 -25585813 - B4A SINE B4 -71 221 1 1 1577 267 325 17 17 chr4 130044309 130044425 -25585695 - PB1D10 SINE Alu 0 117 2 1 1577 627 260 98 39 chr4 130044496 130044700 -25585420 + B3 SINE B2 1 216 0 1 1577 368 230 36 21 chr4 130044728 130044836 -25585284 + PB1D10 SINE Alu 15 130 -19 1 1577 646 280 126 0 chr4 130045225 130045400 -25584720 - B3 SINE B2 0 216 20 1 1577 225 316 103 21 chr4 130045741 130045838 -25584282 + MIRc SINE MIR 34 138 -130 1 1577 393 111 12 111 chr4 130045911 130045992 -25584128 - B1_Mur4 SINE Alu -5 145 73 1 1577 654 250 47 42 chr4 130046122 130046199 -25583921 + ID_B1 SINE B4 11 223 0 1 1577 1080 37 7 0 chr4 130046199 130046334 -25583786 + B1_Mus1 SINE Alu 13 148 0 1 1577 229 298 0 0 chr4 130046612 130046669 -25583451 - MIR3 SINE MIR -48 160 104 1 1577 295 231 0 0 chr4 130046894 130046959 -25583161 - B3 SINE B2 -8 208 144 1 1577 662 201 72 0 chr4 130046977 130047116 -25583004 + B3 SINE B2 1 149 -67 1 1577 337 297 9 10 chr4 130047116 130047219 -25582901 - B1F SINE Alu -10 139 20 1 1577 303 128 0 21 chr4 130047219 130047267 -25582853 - MTC LTR MaLR 0 421 375 1 1577 748 256 43 10 chr4 130047276 130047485 -25582635 - B3 SINE B2 0 216 1 1 1577 244 301 50 57 chr4 130047739 130047880 -25582240 + L1MD3 LINE L1 6455 6603 -1439 1 1577 491 285 112 24 chr4 130048005 130048210 -25581910 + ID_B1 SINE B4 2 224 0 1 1577 211 194 84 56 chr4 130048318 130048389 -25581731 - ID2 SINE ID -10 73 1 1 1577 2248 15 114 0 chr4 130048405 130048667 -25581453 + RLTR10B LTR ERVK 1 292 0 1 1577 1464 57 0 0 chr4 130048668 130048844 -25581276 + MMERVK10C-int LTR ERVK 5 180 -7401 1 1577 237 200 0 22 chr4 130048844 130048890 -25581230 + RLTR27 LTR ERVK 231 275 -34 1 1577 349 41 82 0 chr4 130048890 130048939 -25581181 + MMERVK10C-int LTR ERVK 225 277 -7304 1 1577 722 65 213 0 chr4 130048923 130049031 -25581089 + MMERVK10C-int LTR ERVK 5436 5566 -2015 1 1577 904 104 0 6 chr4 130049031 130049232 -25580888 + MMERVK10C-int LTR ERVK 7442 7581 0 1 1577 2288 8 114 0 chr4 130049232 130049494 -25580626 + RLTR10B LTR ERVK 1 292 0 1 1577 651 207 58 0 chr4 130049519 130049640 -25580480 - B1_Mus2 SINE Alu 0 147 20 1 1577 1253 47 0 0 chr4 130049647 130049795 -25580325 + B1_Mus1 SINE Alu 1 148 0 1 1577 182 91 30 0 chr4 130049844 130049877 -25580243 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1577 319 191 161 43 chr4 130049887 130049980 -25580140 + L1MD3 LINE L1 6743 6846 -1149 1 1577 445 218 9 9 chr4 130050605 130050716 -25579404 + PB1D10 SINE Alu 2 112 -5 1 1577 572 293 59 29 chr4 130051845 130052049 -25578071 + B4A SINE B4 24 233 -59 1 1577 383 265 0 10 chr4 130052215 130052314 -25577806 - PB1D10 SINE Alu -1 116 19 1 1577 323 252 103 0 chr4 130052415 130052522 -25577598 - PB1 SINE Alu 0 127 10 1 1577 812 153 13 53 chr4 130052533 130052685 -25577435 - B1_Mus1 SINE Alu -1 147 2 1 1577 450 203 0 0 chr4 130052724 130052798 -25577322 + B1F1 SINE Alu 76 149 0 1 1577 568 150 50 0 chr4 130052877 130052977 -25577143 - B1_Mur4 SINE Alu 0 150 46 1 1577 556 250 111 37 chr4 130053074 130053320 -25576800 + MTD LTR MaLR 1 413 -6 1 1577 241 261 106 32 chr4 130053327 130053450 -25576670 - ID_B1 SINE B4 0 224 93 1 1577 538 272 150 26 chr4 130053460 130053694 -25576426 - B4A SINE B4 -19 273 11 1 1577 510 264 25 0 chr4 130053731 130053852 -25576268 - RSINE1 SINE B4 -15 150 27 1 1577 260 316 63 0 chr4 130054267 130054346 -25575774 - PB1 SINE Alu -8 119 36 1 1577 363 258 113 0 chr4 130054386 130054483 -25575637 + PB1 SINE Alu 9 116 -11 2 1577 975 175 107 15 chr4 130054838 130055035 -25575085 - B3 SINE B2 0 216 2 2 1577 183 217 131 16 chr4 130055307 130055368 -25574752 - L3 LINE CR1 -3713 776 709 2 1577 450 159 32 59 chr4 130055587 130055774 -25574346 + RMER17C LTR ERVK 96 277 -133 2 1577 662 225 28 21 chr4 130055862 130056003 -25574117 + B1_Mur2 SINE Alu 2 143 -6 2 1577 547 263 59 0 chr4 130056064 130056182 -25573938 - RSINE1 SINE B4 -33 132 8 2 1577 199 342 86 26 chr4 130056357 130056474 -25573646 + MIRc SINE MIR 10 133 -135 2 1577 228 212 55 96 chr4 130056687 130056760 -25573360 - ID_B1 SINE B4 -21 203 134 2 1577 478 297 21 14 chr4 130056802 130056942 -25573178 + ID_B1 SINE B4 3 143 -81 2 1577 920 218 175 15 chr4 130057240 130057566 -25572554 + MTE2b LTR MaLR 1 378 -1 2 1577 872 72 102 2 chr4 130057749 130057900 -25572220 + B2_Mm2 SINE B2 2 173 -43 2 1577 473 234 8 86 chr4 130057929 130058046 -25572074 + PB1D10 SINE Alu 10 117 0 2 1577 681 208 28 25 chr4 130058063 130058234 -25571886 + B3 SINE B2 10 172 -23 2 1577 413 282 11 11 chr4 130058825 130058939 -25571181 - PB1D9 SINE Alu -40 109 1 2 1577 227 297 87 122 chr4 130058908 130058956 -25571164 - MT2B LTR ERVL -313 288 181 2 1577 233 302 16 16 chr4 130058956 130059020 -25571100 - PB1D10 SINE Alu -37 80 17 2 1577 221 322 0 33 chr4 130058976 130059037 -25571083 - ID_B1 SINE B4 -83 141 83 2 1577 448 272 71 6 chr4 130059039 130059209 -25570911 - B3A SINE B2 -17 181 1 2 1577 351 242 10 0 chr4 130059559 130059646 -25570474 + ID4 SINE ID 12 101 -51 2 1577 274 296 176 0 chr4 130060212 130060320 -25569800 - B1F SINE Alu -19 130 4 2 1577 615 290 44 49 chr4 130060357 130060560 -25569560 - B3 SINE B2 -3 213 12 2 1577 297 159 79 0 chr4 130060867 130060930 -25569190 - ID_B1 SINE B4 -71 153 86 2 1577 324 113 19 0 chr4 130060880 130060933 -25569187 - B1_Mus2 SINE Alu -92 55 2 2 1577 1381 101 16 0 chr4 130061004 130061193 -25568927 - B2_Mm2 SINE B2 -2 193 2 2 1577 216 276 0 17 chr4 130061379 130061438 -25568682 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1577 216 228 35 0 chr4 130061937 130061994 -25568126 - B1F1 SINE Alu -90 59 1 2 1577 25 51 0 0 chr4 130062444 130062483 -25567637 + AT_rich Low_complexity Low_complexity 1 39 0 2 1577 971 213 33 28 chr4 130062613 130062826 -25567294 + B3 SINE B2 3 216 0 2 1577 852 151 6 64 chr4 130062833 130062989 -25567131 + B1_Mur3 SINE Alu 1 147 -2 2 1577 243 0 0 0 chr4 130063001 130063028 -25567092 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1577 1236 42 0 0 chr4 130063878 130064020 -25566100 + B1_Mus2 SINE Alu 1 142 -5 2 1577 468 218 0 11 chr4 130064422 130064510 -25565610 - B1_Mur2 SINE Alu 0 149 63 2 1577 255 296 70 70 chr4 130065075 130065260 -25564860 + YREP_Mm Unknown Unknown 110 294 -1518 2 1577 560 178 26 123 chr4 130065124 130065278 -25564842 - ID_B1 SINE B4 0 224 86 2 1577 318 221 54 65 chr4 130065375 130065467 -25564653 - B1F SINE Alu -42 107 17 2 1577 234 0 0 0 chr4 130065535 130065561 -25564559 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1577 740 122 146 0 chr4 130065561 130065684 -25564436 - B1_Mur4 SINE Alu -8 142 2 2 1577 377 199 82 5 chr4 130066178 130066281 -25563839 - B1_Mus1 SINE Alu 0 120 2 2 1577 468 221 73 16 chr4 130066294 130066418 -25563702 - B1F1 SINE Alu -5 144 14 2 1577 948 55 79 0 chr4 130066477 130066604 -25563516 + B2_Mm2 SINE B2 1 137 -58 2 1577 322 214 0 0 chr4 130066630 130066686 -25563434 + B2_Mm2 SINE B2 1 56 -139 2 1577 1163 61 7 0 chr4 130067442 130067589 -25562531 + B1_Mus1 SINE Alu 1 148 0 2 1577 211 311 128 28 chr4 130068040 130068149 -25561971 - L2b LINE L2 -10 3365 3246 2 1577 313 242 15 0 chr4 130068181 130068247 -25561873 - LTR37B LTR ERV1 -50 418 352 2 1577 229 235 224 0 chr4 130068368 130068453 -25561667 + MER103 DNA DNA 3 106 -60 2 1577 539 172 30 10 chr4 130068475 130068575 -25561545 + ID_B1 SINE B4 94 195 -29 2 1577 21 0 0 0 chr4 130068880 130068901 -25561219 + AT_rich Low_complexity Low_complexity 1 21 0 2 1577 662 155 0 5 chr4 130068902 130069115 -25561005 + (TG)n Simple_repeat Simple_repeat 1 211 0 2 1577 557 242 122 18 chr4 130069123 130069287 -25560833 - B3A SINE B2 -16 182 2 2 1577 229 355 51 60 chr4 130069346 130069463 -25560657 - RSINE1 SINE B4 -4 161 46 2 1577 600 192 96 0 chr4 130069463 130069609 -25560511 - RSINE1 SINE B4 -4 161 2 2 1577 213 263 0 0 chr4 130070013 130070070 -25560050 + C-rich Low_complexity Low_complexity 1 57 0 2 1577 375 123 37 0 chr4 130120301 130120382 -25509738 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1577 386 232 91 0 chr4 130121205 130121304 -25508816 - B1F SINE Alu 0 149 42 2 1577 1218 55 0 7 chr4 130121325 130121473 -25508647 - B1_Mus2 SINE Alu 0 147 1 2 1577 1407 84 21 16 chr4 130121565 130121579 -25508541 - B2_Mm2 SINE B2 0 195 184 2 1577 186 43 0 0 chr4 130121579 130121602 -25508518 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1577 1407 84 21 16 chr4 130121602 130121781 -25508339 - B2_Mm2 SINE B2 -12 183 1 2 1577 403 287 98 0 chr4 130121821 130121943 -25508177 - RSINE1 SINE B4 -29 136 3 2 1577 1330 35 6 0 chr4 130122090 130122260 -25507860 - B2_Mm2 SINE B2 -23 172 2 2 1577 674 291 60 13 chr4 130122713 130122946 -25507174 + MER21B LTR ERV1 512 755 -108 2 1577 2430 157 61 2 chr4 130123460 130123855 -25506265 + MTC LTR MaLR 4 421 0 2 1577 484 290 69 0 chr4 130124154 130124299 -25505821 + RSINE1 SINE B4 11 165 0 2 1577 189 147 0 0 chr4 130124843 130124877 -25505243 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1577 217 220 102 0 chr4 130124992 130125051 -25505069 + B1_Mus1 SINE Alu 20 84 -64 2 1577 323 289 32 16 chr4 130125369 130125492 -25504628 - MIRb SINE MIR -142 126 2 2 1577 24 53 0 0 chr4 130125638 130125676 -25504444 + GC_rich Low_complexity Low_complexity 1 38 0 2 1577 283 264 151 0 chr4 130127191 130127297 -25502823 + L2a LINE L2 3304 3425 -1 2 1577 677 218 135 22 chr4 130127436 130127614 -25502506 - B3A SINE B2 0 198 1 2 1577 344 283 0 29 chr4 130127656 130127758 -25502362 - PB1D7 SINE Alu 0 120 22 2 1577 987 154 0 13 chr4 130127800 130127951 -25502169 - B1_Mur2 SINE Alu 0 149 1 2 1577 189 327 9 88 chr4 130129061 130129175 -25500945 + MIRb SINE MIR 17 121 -147 2 1577 833 231 6 31 chr4 130129214 130129375 -25500745 - RSINE1 SINE B4 -5 160 4 2 1577 315 0 0 0 chr4 130129384 130129419 -25500701 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1577 627 129 121 0 chr4 130129419 130129543 -25500577 - B1_Mur3 SINE Alu -10 139 1 2 1577 358 302 11 85 chr4 130129619 130129796 -25500324 - B4A SINE B4 -2 290 127 2 1577 1125 116 0 0 chr4 130129820 130129993 -25500127 + (TTTC)n Simple_repeat Simple_repeat 1 173 0 2 1577 1143 65 7 0 chr4 130129993 130130146 -25499974 - B2_Mm2 SINE B2 -38 157 4 2 1577 220 320 40 0 chr4 130130155 130130230 -25499890 - B4A SINE B4 -206 86 9 2 1577 187 274 20 0 chr4 130130335 130130386 -25499734 + MIR SINE MIR 27 78 -130 2 1577 223 150 25 0 chr4 130130801 130130841 -25499279 - MIRb SINE MIR -40 228 188 2 1577 411 301 26 99 chr4 130130847 130131079 -25499041 - MIRb SINE MIR -7 261 47 2 1577 644 96 209 0 chr4 130132100 130132215 -25497905 - B1_Mur4 SINE Alu -9 141 3 2 1577 742 189 34 15 chr4 130132215 130132363 -25497757 - B3A SINE B2 -66 150 1 2 1577 210 37 0 0 chr4 130132393 130132420 -25497700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1577 1196 60 83 12 chr4 130132420 130132588 -25497532 - B2_Mm2 SINE B2 -14 181 2 2 1577 391 267 20 10 chr4 130132588 130132690 -25497430 - PB1D10 SINE Alu 0 117 15 2 1577 221 294 80 131 chr4 130132824 130132857 -25497263 + ID_B1 SINE B4 58 125 -99 2 1577 338 219 112 140 chr4 130132857 130132901 -25497219 + B1F SINE Alu 10 52 -97 2 1577 1181 55 0 14 chr4 130132901 130133049 -25497071 + B1_Mus1 SINE Alu 2 147 -1 2 1577 221 294 80 131 chr4 130133049 130133147 -25496973 + ID_B1 SINE B4 126 224 0 2 1577 787 206 14 0 chr4 130133166 130133307 -25496813 + B1_Mur2 SINE Alu 1 143 -6 2 1577 608 212 65 43 chr4 130133321 130133459 -25496661 + B1F2 SINE Alu 1 141 -8 2 1577 405 0 0 0 chr4 130133539 130133584 -25496536 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1577 917 238 41 73 chr4 130133661 130133879 -25496241 - B3 SINE B2 -5 211 1 2 1577 503 224 119 86 chr4 130133902 130134112 -25496008 + ID_B1 SINE B4 1 217 -7 2 1577 214 355 0 0 chr4 130134660 130134722 -25495398 + MIR SINE MIR 123 184 -78 2 1577 207 0 0 0 chr4 130135038 130135061 -25495059 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1577 902 167 14 7 chr4 130135077 130135222 -25494898 - B1_Mus2 SINE Alu 0 147 2 2 1577 221 277 108 0 chr4 130136079 130136144 -25493976 + MIR SINE MIR 73 144 -64 2 1577 1133 160 69 0 chr4 130136464 130136652 -25493468 - B3 SINE B2 -15 201 1 2 1577 611 250 36 0 chr4 130136869 130137009 -25493111 - ID_B1 SINE B4 0 224 80 2 1577 251 259 90 45 chr4 130137103 130137192 -25492928 - RSINE1 SINE B4 -70 95 3 2 1577 342 310 8 34 chr4 130137196 130137213 -25492907 - B3 SINE B2 -12 204 188 3 1577 459 0 0 0 chr4 130137213 130137264 -25492856 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1577 342 310 8 34 chr4 130137264 130137363 -25492757 - B3 SINE B2 -29 187 91 3 1577 215 250 39 0 chr4 130137426 130137478 -25492642 - L2c LINE L2 -25 3362 3309 3 1577 324 297 23 28 chr4 130137733 130137912 -25492208 - MIR SINE MIR -96 180 1 3 1577 183 42 0 0 chr4 130138080 130138104 -25492016 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1577 495 277 78 0 chr4 130138243 130138409 -25491711 - ID_B1 SINE B4 -6 218 40 3 1577 560 224 0 25 chr4 130139036 130139155 -25490965 + PB1D10 SINE Alu 1 116 -1 3 1577 457 252 0 0 chr4 130139158 130139269 -25490851 + ID_B1 SINE B4 114 224 0 3 1577 677 177 56 7 chr4 130139341 130139483 -25490637 - B1_Mur1 SINE Alu 0 149 1 3 1577 706 159 43 7 chr4 130140651 130140790 -25489330 + B1F2 SINE Alu 6 149 0 3 1577 447 195 0 142 chr4 130140765 130140920 -25489200 - MER5A DNA MER1_type -39 150 18 3 1577 209 154 0 103 chr4 130140970 130140994 -25489126 + T-rich Low_complexity Low_complexity 32 54 0 3 1577 1671 21 5 20 chr4 130140994 130141190 -25488930 - B2_Mm1t SINE B2 0 193 1 3 1577 209 154 0 103 chr4 130141190 130141223 -25488897 + T-rich Low_complexity Low_complexity 3 31 0 3 1577 432 257 58 71 chr4 130141256 130141411 -25488709 - RSINE1 SINE B4 -12 153 1 3 1577 601 279 124 20 chr4 130141791 130141992 -25488128 + ID_B1 SINE B4 2 223 -1 3 1577 229 258 16 0 chr4 130142727 130142789 -25487331 + Zaphod DNA Tip100 3893 3955 -76 3 1577 382 309 63 28 chr4 130142824 130142967 -25487153 - B1F SINE Alu 0 149 2 3 1577 253 250 108 36 chr4 130142969 130143052 -25487068 + Zaphod DNA Tip100 3943 4031 0 3 1577 1476 178 92 19 chr4 130143618 130143934 -25486186 - MTC LTR MaLR 0 421 83 3 1577 3991 158 41 5 chr4 130143934 130144768 -25485352 - RMER1B Other Other 0 1066 152 3 1577 574 170 0 10 chr4 130144774 130144875 -25485245 - MTC LTR MaLR -321 100 1 3 1577 378 0 0 0 chr4 130144877 130144919 -25485201 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1577 556 225 68 68 chr4 130144940 130145088 -25485032 - RSINE1 SINE B4 -10 155 8 3 1577 312 257 27 0 chr4 130145097 130145171 -25484949 - PB1D7 SINE Alu -44 76 1 3 1577 1617 47 0 0 chr4 130146153 130146343 -25483777 - B2_Mm1a SINE B2 -2 191 2 3 1577 501 17 0 0 chr4 130147650 130147708 -25482412 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1577 592 144 71 32 chr4 130147716 130147847 -25482273 - B1_Mur4 SINE Alu -11 139 6 3 1577 357 271 0 59 chr4 130147874 130147976 -25482144 - ID_B1 SINE B4 0 224 129 3 1577 385 277 76 29 chr4 130147985 130148093 -25482027 - L1M4 LINE L1 -981 5165 5059 3 1577 911 175 0 7 chr4 130148093 130148237 -25481883 - B1_Mur1 SINE Alu -6 143 1 3 1577 385 277 76 29 chr4 130148237 130148299 -25481821 - L1M4 LINE L1 -1088 5058 4988 3 1577 404 230 26 123 chr4 130148498 130148652 -25481468 - RMER20B LTR ERVK -154 473 335 3 1577 278 231 156 86 chr4 130148638 130148766 -25481354 - RSINE1 SINE B4 -27 138 2 3 1577 265 233 41 0 chr4 130148775 130148848 -25481272 - L1M4 LINE L1 -1447 4699 4624 3 1577 359 145 36 3 chr4 130148848 130148932 -25481188 - B1_Mm SINE Alu 0 147 31 3 1577 400 123 0 15 chr4 130149257 130149323 -25480797 - B1_Mur2 SINE Alu -55 94 30 3 1577 303 319 0 50 chr4 130149345 130149464 -25480656 - L1M4 LINE L1 -1511 4635 4523 3 1577 312 246 33 43 chr4 130149474 130149583 -25480537 + MIRc SINE MIR 44 153 -115 3 1577 541 224 14 63 chr4 130150210 130150353 -25479767 + B3A SINE B2 59 194 -4 3 1577 342 45 0 0 chr4 130150415 130150459 -25479661 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1577 229 280 80 0 chr4 130150538 130150613 -25479507 + MER81 DNA AcHobo 24 104 -10 3 1577 1193 191 29 0 chr4 130151121 130151330 -25478790 - B3 SINE B2 -1 215 1 3 1577 423 226 94 17 chr4 130151353 130151470 -25478650 - B4 SINE B4 -69 223 98 3 1577 359 307 40 0 chr4 130151527 130151628 -25478492 - B4 SINE B4 -186 106 2 3 1577 247 257 220 7 chr4 130151651 130151792 -25478328 - MIR SINE MIR -61 201 31 3 1577 259 229 16 0 chr4 130152169 130152230 -25477890 - MIRb SINE MIR -89 179 118 3 1577 905 165 129 11 chr4 130153061 130153239 -25476881 + B3 SINE B2 3 201 -15 3 1577 246 254 42 0 chr4 130153246 130153317 -25476803 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1577 260 214 18 0 chr4 130153520 130153576 -25476544 - RSINE1 SINE B4 -106 59 3 3 1577 185 94 31 0 chr4 130153577 130153609 -25476511 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 3 1577 587 271 7 14 chr4 130153609 130153755 -25476365 - ID_B1 SINE B4 0 224 80 3 1577 767 119 8 0 chr4 130153761 130153879 -25476241 + B1_Mus2 SINE Alu 23 141 -6 3 1577 216 0 0 0 chr4 130153880 130153904 -25476216 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1577 405 0 0 0 chr4 130154166 130154211 -25475909 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1577 1150 62 7 0 chr4 130154266 130154410 -25475710 + B1_Mus2 SINE Alu 1 145 -2 3 1578 188 35 35 0 chr4 130154624 130154653 -25475467 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1578 216 140 23 23 chr4 130154657 130154701 -25475419 + CT-rich Low_complexity Low_complexity 1 44 0 3 1578 465 226 19 9 chr4 130154702 130154809 -25475311 - PB1D9 SINE Alu -5 115 8 3 1578 225 296 48 58 chr4 130154830 130154934 -25475186 + L2b LINE L2 3264 3416 -10 3 1578 186 86 27 54 chr4 130155182 130155219 -25474901 - MIR3 SINE MIR -45 163 128 3 1578 186 268 0 82 chr4 130155347 130155408 -25474712 - MIR SINE MIR -68 140 85 3 1578 278 261 0 0 chr4 130156218 130156283 -25473837 + B4A SINE B4 84 148 -144 3 1578 504 207 0 59 chr4 130156226 130156344 -25473776 + PB1D10 SINE Alu 7 117 0 3 1578 668 159 40 0 chr4 130156834 130156960 -25473160 + B1_Mur3 SINE Alu 2 132 -17 3 1578 351 256 206 8 chr4 130157087 130157213 -25472907 + ID_B1 SINE B4 74 224 0 3 1578 263 258 76 0 chr4 130157240 130157306 -25472814 + RSINE1 SINE B4 6 76 -89 3 1578 432 0 0 0 chr4 130157343 130157391 -25472729 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1578 989 91 0 7 chr4 130157682 130157826 -25472294 - B1_Mur4 SINE Alu 0 150 8 3 1578 288 0 0 0 chr4 130157953 130157985 -25472135 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1578 423 301 51 7 chr4 130157997 130158134 -25471986 - RSINE1 SINE B4 -21 144 2 3 1578 1622 56 0 5 chr4 130158187 130158383 -25471737 + B2_Mm2 SINE B2 1 195 0 3 1578 218 279 132 0 chr4 130158383 130158451 -25471669 - PB1D9 SINE Alu -14 106 30 3 1578 315 276 219 22 chr4 130158826 130158963 -25471157 + RSINE1 SINE B4 2 165 0 3 1578 595 148 35 29 chr4 130158981 130159155 -25470965 + (CATA)n Simple_repeat Simple_repeat 1 175 0 3 1578 487 220 6 28 chr4 130159176 130159358 -25470762 + (CATA)n Simple_repeat Simple_repeat 3 180 0 3 1578 361 305 8 8 chr4 130159671 130159790 -25470330 + MIRc SINE MIR 68 186 -82 3 1578 21 36 0 0 chr4 130160159 130160187 -25469933 + AT_rich Low_complexity Low_complexity 1 28 0 3 1578 407 222 50 20 chr4 130160198 130160299 -25469821 - RSINE1 SINE B4 -38 127 24 3 1578 234 230 72 45 chr4 130160916 130161027 -25469093 - MIRc SINE MIR -52 156 51 3 1578 453 276 0 49 chr4 130161157 130161279 -25468841 + PB1D10 SINE Alu 2 117 0 3 1578 443 253 242 19 chr4 130161620 130161781 -25468339 - B3A SINE B2 -1 197 1 3 1578 712 121 102 31 chr4 130161809 130161937 -25468183 - B1_Mus1 SINE Alu -10 138 2 3 1578 1218 55 0 0 chr4 130161965 130162111 -25468009 - B1_Mus2 SINE Alu 0 147 2 3 1578 213 378 0 0 chr4 130163058 130163148 -25466972 + MIRb SINE MIR 60 149 -119 3 1578 473 177 108 67 chr4 130163183 130163417 -25466703 - ORR1D1 LTR MaLR -5 369 87 3 1578 243 0 0 0 chr4 130163419 130163446 -25466674 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1578 757 178 0 0 chr4 130163447 130163576 -25466544 - B1_Mus1 SINE Alu -12 136 8 3 1578 535 128 0 121 chr4 130163578 130163694 -25466426 - ORR1D1 LTR MaLR -272 102 1 3 1578 1082 200 20 0 chr4 130163706 130163901 -25466219 - B3 SINE B2 -17 199 1 3 1578 22 0 0 0 chr4 130163905 130163927 -25466193 + AT_rich Low_complexity Low_complexity 1 22 0 3 1578 600 179 189 20 chr4 130163960 130163972 -25466148 - ID_B1 SINE B4 0 224 213 3 1578 1249 34 0 7 chr4 130163972 130164120 -25466000 - B1_Mus2 SINE Alu 0 147 1 3 1578 600 179 189 20 chr4 130164120 130164255 -25465865 - ID_B1 SINE B4 -12 212 52 3 1578 806 258 21 64 chr4 130164284 130164520 -25465600 + B4A SINE B4 6 231 -61 3 1578 1559 62 0 10 chr4 130164520 130164717 -25465403 + B2_Mm2 SINE B2 1 195 0 3 1578 358 287 120 95 chr4 130164725 130164883 -25465237 + RSINE1 SINE B4 4 165 0 3 1578 207 0 0 0 chr4 130164958 130164981 -25465139 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1578 644 167 9 0 chr4 130165004 130165112 -25465008 + B1_Mus1 SINE Alu 24 132 -16 3 1578 198 333 24 36 chr4 130165274 130165358 -25464762 - MIR3 SINE MIR -43 165 83 3 1578 424 311 0 28 chr4 130165993 130166102 -25464018 + B1F1 SINE Alu 2 107 -42 3 1578 359 280 122 46 chr4 130165994 130166125 -25463995 + ID_B1 SINE B4 84 224 0 3 1578 217 354 73 0 chr4 130166299 130166395 -25463725 + MIRb SINE MIR 94 196 -72 3 1578 853 171 0 14 chr4 130166401 130166549 -25463571 + B1_Mus1 SINE Alu 3 148 0 3 1578 196 113 37 19 chr4 130166768 130166822 -25463298 + T-rich Low_complexity Low_complexity 6 60 0 3 1578 1250 54 0 0 chr4 130166822 130166970 -25463150 - B1_Mus1 SINE Alu 0 148 1 3 1578 180 0 0 0 chr4 130167164 130167184 -25462936 + (CCA)n Simple_repeat Simple_repeat 2 21 0 3 1578 344 314 20 9 chr4 130168243 130168386 -25461734 + MIR3 SINE MIR 13 161 -107 3 1578 387 250 37 88 chr4 130168440 130168576 -25461544 - MIR SINE MIR -127 141 13 3 1578 719 230 7 21 chr4 130169720 130169862 -25460258 - B1_Mur1 SINE Alu -3 146 7 4 1578 380 221 274 0 chr4 130170031 130170144 -25459976 - RSINE1 SINE B4 -12 153 10 4 1578 207 0 0 0 chr4 130170146 130170169 -25459951 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1578 376 292 10 0 chr4 130170181 130170277 -25459843 - PB1D10 SINE Alu -19 98 2 4 1578 769 182 8 0 chr4 130170358 130170490 -25459630 + B1_Mur4 SINE Alu 2 134 -16 4 1578 225 94 0 0 chr4 130170578 130170610 -25459510 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1578 1514 169 33 158 chr4 130170816 130171064 -25459056 - ORR1D1 LTR MaLR 0 374 139 4 1578 1167 54 0 20 chr4 130171064 130171214 -25458906 + B1_Mus1 SINE Alu 2 148 0 4 1578 1514 169 33 158 chr4 130171214 130171244 -25458876 - ORR1D1 LTR MaLR -236 138 138 4 1578 1479 53 0 41 chr4 130171244 130171441 -25458679 + B2_Mm1a SINE B2 2 190 -3 4 1578 1514 169 33 158 chr4 130171441 130171453 -25458667 - ORR1D1 LTR MaLR -236 138 138 4 1578 949 46 15 8 chr4 130171453 130171584 -25458536 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 4 1578 1514 169 33 158 chr4 130171584 130171714 -25458406 - ORR1D1 LTR MaLR -236 138 5 4 1578 1048 65 234 0 chr4 130171876 130172030 -25458090 + B2_Mm2 SINE B2 2 191 -4 4 1578 391 324 119 0 chr4 130172076 130172252 -25457868 - MLT1E2 LTR MaLR -430 197 1 4 1578 433 216 58 10 chr4 130172547 130172650 -25457470 + PB1D10 SINE Alu 2 109 -8 4 1578 455 224 131 39 chr4 130172661 130172791 -25457329 + RSINE1 SINE B4 5 146 -19 4 1578 771 101 0 0 chr4 130172829 130172948 -25457172 + (GAA)n Simple_repeat Simple_repeat 3 121 0 4 1578 279 0 0 0 chr4 130172948 130172979 -25457141 + (CAG)n Simple_repeat Simple_repeat 1 31 0 4 1578 643 229 7 60 chr4 130173055 130173204 -25456916 + ID_B1 SINE B4 84 224 0 4 1578 448 146 22 0 chr4 130173204 130173293 -25456827 + GA-rich Low_complexity Low_complexity 2 92 0 4 1578 1141 75 0 7 chr4 130173538 130173686 -25456434 + B1_Mus1 SINE Alu 2 148 0 4 1578 592 270 102 11 chr4 130173907 130174094 -25456026 - MER20 DNA MER1_type 0 219 16 4 1578 917 205 6 50 chr4 130174181 130174343 -25455777 - B3 SINE B2 -44 172 18 4 1578 2456 132 38 20 chr4 130174343 130174739 -25455381 + MTB_Mm LTR MaLR 5 407 0 4 1578 917 205 6 50 chr4 130174739 130174756 -25455364 - B3 SINE B2 -199 17 1 4 1578 558 0 0 0 chr4 130174838 130174900 -25455220 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 4 1578 1202 45 0 82 chr4 130174902 130175030 -25455090 - B2_Mm2 SINE B2 -38 157 42 4 1578 1151 75 0 0 chr4 130175030 130175176 -25454944 - B1_Mus1 SINE Alu 0 148 3 4 1578 1202 45 0 82 chr4 130175176 130175218 -25454902 - B2_Mm2 SINE B2 -154 41 1 4 1578 728 298 11 0 chr4 130175321 130175509 -25454611 + B3 SINE B2 27 216 0 4 1578 414 296 128 71 chr4 130175537 130175615 -25454505 + ID_B1 SINE B4 2 174 -50 4 1578 713 167 0 60 chr4 130175615 130175688 -25454432 + B1_Mur3 SINE Alu 24 94 -55 4 1578 1121 158 51 9 chr4 130175688 130175905 -25454215 - URR1A DNA MER1_type 0 226 1 4 1578 414 296 128 71 chr4 130175905 130175964 -25454156 + ID_B1 SINE B4 175 224 0 4 1578 1262 34 0 7 chr4 130175966 130176114 -25454006 + B1_Mm SINE Alu 1 147 0 4 1578 441 233 87 0 chr4 130176290 130176393 -25453727 - PB1D9 SINE Alu 0 120 9 4 1578 257 318 54 96 chr4 130176319 130176486 -25453634 - B4 SINE B4 -123 169 10 4 1578 393 286 0 45 chr4 130176510 130176620 -25453500 - PB1D10 SINE Alu -12 105 1 4 1578 537 293 54 7 chr4 130176620 130176700 -25453420 - ID_B1 SINE B4 -78 214 2 4 1578 267 284 26 39 chr4 130176700 130176773 -25453347 - B1_Mus1 SINE Alu -76 72 1 4 1578 261 0 0 0 chr4 130176776 130176805 -25453315 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 4 1578 218 209 23 0 chr4 130176805 130176848 -25453272 + CT-rich Low_complexity Low_complexity 3 46 0 4 1578 965 192 99 0 chr4 130177002 130177184 -25452936 + B3 SINE B2 2 201 -15 4 1578 897 175 0 0 chr4 130177246 130177389 -25452731 + B1_Mur2 SINE Alu 5 147 -2 4 1578 537 125 0 77 chr4 130177871 130177975 -25452145 + B1_Mur3 SINE Alu 33 128 -21 4 1578 1434 156 186 49 chr4 130178048 130178392 -25451728 + ORR1B1 LTR MaLR 4 394 0 4 1578 757 198 24 77 chr4 130178520 130178728 -25451392 + B3A SINE B2 1 197 -1 4 1578 398 176 0 0 chr4 130178848 130178916 -25451204 - ORR1C1 LTR MaLR 0 378 311 4 1578 428 266 8 42 chr4 130180018 130180136 -25449984 + B3A SINE B2 7 120 -78 4 1578 567 246 27 0 chr4 130180291 130180401 -25449719 - B3 SINE B2 -75 141 29 4 1578 1467 22 60 11 chr4 130180402 130180587 -25449533 - B2_Mm2 SINE B2 -1 194 1 4 1578 1263 34 0 0 chr4 130180740 130180887 -25449233 + B1_Mm SINE Alu 1 147 0 4 1578 927 185 81 15 chr4 130180945 130181143 -25448977 + B3 SINE B2 1 211 -5 4 1578 261 0 0 0 chr4 130181227 130181256 -25448864 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1578 290 0 0 0 chr4 130181282 130181323 -25448797 - L1Md_T LINE L1 0 6582 6542 4 1578 462 218 148 43 chr4 130181323 130181438 -25448682 - B1_Mur4 SINE Alu -10 140 14 4 1578 1100 57 42 14 chr4 130181439 130181581 -25448539 + B1_Mm SINE Alu 2 147 0 4 1578 1137 60 0 0 chr4 130181625 130181759 -25448361 + B1_Mus1 SINE Alu 5 138 -10 4 1578 453 36 0 0 chr4 130181759 130181814 -25448306 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 1578 238 330 86 19 chr4 130182039 130182144 -25447976 + PB1D10 SINE Alu 1 112 -5 4 1578 423 223 198 57 chr4 130182168 130182325 -25447795 + B3 SINE B2 4 182 -34 4 1578 496 280 107 1 chr4 130182358 130182503 -25447617 + B3A SINE B2 14 169 -26 4 1578 282 56 0 0 chr4 130182503 130182539 -25447581 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 4 1578 213 318 99 31 chr4 130182539 130182555 -25447565 + B2_Mm2 SINE B2 170 185 -10 4 1578 1682 16 0 0 chr4 130182560 130182745 -25447375 + B2_Mm1a SINE B2 2 186 -7 4 1578 49 66 0 0 chr4 130182745 130182836 -25447284 + AT_rich Low_complexity Low_complexity 1 91 0 4 1578 335 312 85 5 chr4 130182836 130183050 -25447070 - L1M5 LINE L1 -497 5682 5447 4 1578 268 292 69 0 chr4 130183143 130183215 -25446905 - B4A SINE B4 0 292 216 4 1578 1445 55 20 7 chr4 130183222 130183425 -25446695 - B2_Mm1a SINE B2 0 195 5 4 1578 829 153 21 7 chr4 130183524 130183669 -25446451 - B1_Mur4 SINE Alu -2 148 2 4 1578 649 274 153 30 chr4 130183670 130183873 -25446247 - B4A SINE B4 -63 229 2 4 1578 202 190 35 0 chr4 130183962 130184020 -25446100 + (CCCA)n Simple_repeat Simple_repeat 1 60 0 4 1578 261 0 0 0 chr4 130184401 130184430 -25445690 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 4 1578 1220 49 0 0 chr4 130184431 130184574 -25445546 - B1_Mus2 SINE Alu -4 143 1 4 1578 600 147 54 134 chr4 130184582 130184731 -25445389 - B1_Mur2 SINE Alu 0 149 13 4 1578 369 43 0 0 chr4 130184773 130184820 -25445300 + (CCTA)n Simple_repeat Simple_repeat 1 47 0 4 1578 419 205 36 0 chr4 130184824 130184907 -25445213 - PB1D10 SINE Alu -8 109 24 4 1578 389 311 174 22 chr4 130185128 130185352 -25444768 + MLT1K LTR MaLR 10 267 -328 4 1578 204 163 184 0 chr4 130185516 130185565 -25444555 - L2 LINE L2 -529 2890 2833 4 1578 254 298 45 55 chr4 130185565 130185675 -25444445 + B1F2 SINE Alu 40 148 -1 4 1578 2526 48 0 3 chr4 130185691 130186002 -25444118 + L1Md_F2 LINE L1 6273 6582 0 4 1578 228 86 0 0 chr4 130186091 130186126 -25443994 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1578 29 0 0 0 chr4 130186176 130186205 -25443915 + AT_rich Low_complexity Low_complexity 1 29 0 4 1578 459 0 0 0 chr4 130186205 130186256 -25443864 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1578 575 233 0 63 chr4 130186306 130186448 -25443672 + RSINE1 SINE B4 2 134 -31 4 1578 413 280 113 8 chr4 130186604 130186737 -25443383 + MLT1K LTR MaLR 375 521 -74 4 1578 205 175 50 0 chr4 130186784 130186824 -25443296 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 4 1578 267 31 0 0 chr4 130186844 130186876 -25443244 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 4 1578 415 179 12 60 chr4 130186881 130186964 -25443156 - B1_Mur1 SINE Alu -1 148 70 4 1578 337 314 15 90 chr4 130186968 130187101 -25443019 - PB1D7 SINE Alu -24 123 1 4 1578 639 246 3 10 chr4 130187230 130187535 -25442585 + (TG)n Simple_repeat Simple_repeat 1 302 0 4 1578 453 264 43 70 chr4 130187535 130187722 -25442398 - B3A SINE B2 -16 182 1 4 1578 472 171 206 24 chr4 130187872 130187998 -25442122 + B1_Mur2 SINE Alu 1 149 0 4 1578 185 86 0 54 chr4 130188002 130188039 -25442081 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 1578 24 0 0 0 chr4 130188112 130188136 -25441984 + AT_rich Low_complexity Low_complexity 1 24 0 4 1578 1009 107 109 29 chr4 130188261 130188435 -25441685 - B2_Mm1a SINE B2 -4 189 2 4 1578 363 221 189 70 chr4 130188459 130188644 -25441476 - B3 SINE B2 -6 210 4 4 1578 201 108 0 0 chr4 130188715 130188752 -25441368 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1578 1238 34 0 7 chr4 130188752 130188899 -25441221 - B1_Mus2 SINE Alu 0 147 2 4 1578 225 0 0 0 chr4 130188908 130188933 -25441187 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1578 1396 76 38 5 chr4 130188943 130189129 -25440991 + B2_Mm2 SINE B2 2 193 -2 4 1578 1084 58 160 6 chr4 130189129 130189275 -25440845 - B2_Mm2 SINE B2 -26 169 2 4 1578 1283 34 0 0 chr4 130189339 130189486 -25440634 + B1_Mm SINE Alu 1 147 0 4 1578 700 202 65 90 chr4 130189621 130189822 -25440298 + B3A SINE B2 1 196 -2 4 1578 399 174 14 0 chr4 130189830 130189899 -25440221 + B3A SINE B2 1 70 -128 4 1578 188 0 74 0 chr4 130189902 130189929 -25440191 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1578 1089 74 0 0 chr4 130189929 130190064 -25440056 - B1_Mus1 SINE Alu -10 138 4 5 1578 3699 131 5 32 chr4 130190072 130190696 -25439424 - L1_Mur2 LINE L1 -586 5291 4685 5 1578 3058 194 26 19 chr4 130190696 130190930 -25439190 + Lx2B LINE L1 6372 6607 -393 5 1578 2427 95 3 9 chr4 130190930 130191259 -25438861 - ORR1A2 LTR MaLR 0 327 1 5 1578 3058 194 26 19 chr4 130191259 130191649 -25438471 + Lx2B LINE L1 6608 7000 0 5 1578 1429 72 0 6 chr4 130191690 130191871 -25438249 - B2_Mm2 SINE B2 -15 180 1 5 1578 485 234 92 103 chr4 130191901 130192096 -25438024 + B3A SINE B2 3 195 -3 5 1578 876 79 14 14 chr4 130192101 130192242 -25437878 + Lx2A LINE L1 6850 6990 -18 5 1578 1265 94 0 0 chr4 130192243 130192414 -25437706 + B2_Mm2 SINE B2 2 172 -23 5 1578 189 0 0 0 chr4 130192433 130192454 -25437666 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 1578 377 223 152 32 chr4 130192954 130193079 -25437041 + B1F1 SINE Alu 6 145 -4 5 1578 1419 68 10 40 chr4 130193172 130193370 -25436750 - B2_Mm1t SINE B2 0 193 2 5 1578 1125 36 0 0 chr4 130193370 130193507 -25436613 + B1_Mus1 SINE Alu 12 148 0 5 1578 216 0 0 0 chr4 130193507 130193531 -25436589 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1578 355 266 64 9 chr4 130193681 130193791 -25436329 + PB1D10 SINE Alu 1 116 -1 5 1578 394 248 115 70 chr4 130193792 130193948 -25436172 + RSINE1 SINE B4 2 164 -1 5 1578 207 0 0 0 chr4 130193961 130193984 -25436136 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 1578 326 299 0 118 chr4 130194070 130194137 -25435983 + ID_B1 SINE B4 49 106 -118 5 1578 305 283 103 26 chr4 130194137 130194253 -25435867 + PB1 SINE Alu 2 126 -1 5 1578 423 197 0 13 chr4 130194253 130194330 -25435790 + B1F2 SINE Alu 26 101 -48 5 1578 326 299 0 118 chr4 130194330 130194363 -25435757 + ID_B1 SINE B4 107 205 -19 5 1578 1180 68 0 0 chr4 130194415 130194561 -25435559 - B1_Mus2 SINE Alu 0 147 2 5 1578 519 95 0 0 chr4 130194721 130194795 -25435325 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1578 321 139 361 0 chr4 130195329 130195401 -25434719 - B1_Mur3 SINE Alu -36 113 16 5 1578 447 192 18 100 chr4 130195396 130195506 -25434614 - B1_Mur1 SINE Alu -28 121 21 5 1578 180 234 0 0 chr4 130195603 130195650 -25434470 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1578 639 289 32 16 chr4 130195651 130195841 -25434279 - ID_B1 SINE B4 -21 203 11 5 1578 182 128 0 25 chr4 130195972 130196012 -25434108 + (TTGTG)n Simple_repeat Simple_repeat 3 41 0 5 1578 492 193 167 8 chr4 130196012 130196132 -25433988 - ID_B1 SINE B4 0 224 86 5 1578 580 259 53 59 chr4 130196586 130196912 -25433208 - MER57A-int LTR ERV1 -200 5987 5794 5 1578 905 206 0 121 chr4 130196913 130197128 -25432992 - B3A SINE B2 -8 190 2 5 1578 410 243 9 18 chr4 130197163 130197272 -25432848 + PB1D10 SINE Alu 5 112 -5 5 1578 326 261 0 0 chr4 130197282 130197347 -25432773 + ID4 SINE ID 2 66 -17 5 1578 1296 20 0 0 chr4 130197365 130197511 -25432609 + B1_Mus2 SINE Alu 2 147 0 5 1578 3623 57 2 95 chr4 130197589 130197947 -25432173 - LTRIS2 LTR ERV1 0 564 237 5 1578 920 16 147 16 chr4 130197947 130198076 -25432044 - B1_Mm SINE Alu 0 147 2 5 1578 3623 57 2 95 chr4 130198076 130198088 -25432032 - LTRIS2 LTR ERV1 -328 236 236 5 1578 1695 16 0 5 chr4 130198088 130198281 -25431839 - B2_Mm1a SINE B2 0 193 2 5 1578 3623 57 2 95 chr4 130198281 130198456 -25431664 - LTRIS2 LTR ERV1 -328 236 69 5 1578 1094 196 25 0 chr4 130198550 130198749 -25431371 + B3 SINE B2 3 206 -10 5 1578 366 23 0 0 chr4 130198784 130198827 -25431293 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 5 1578 901 90 0 20 chr4 130198827 130198975 -25431145 + (GGGAA)n Simple_repeat Simple_repeat 2 146 0 5 1578 614 184 20 47 chr4 130199023 130199034 -25431086 + ID_B1 SINE B4 80 219 -1 5 1578 1037 53 15 0 chr4 130199034 130199167 -25430953 + B1_Mus1 SINE Alu 9 143 -5 5 1578 207 191 0 0 chr4 130199173 130199220 -25430900 + A-rich Low_complexity Low_complexity 2 48 0 5 1578 230 290 0 46 chr4 130199371 130199436 -25430684 - PB1 SINE Alu -2 125 64 5 1578 575 227 0 9 chr4 130199518 130199629 -25430491 - B1_Mus2 SINE Alu -13 134 25 5 1578 518 84 0 0 chr4 130199665 130199748 -25430372 + L1Md_F2 LINE L1 6499 6581 -1 5 1578 1583 38 5 0 chr4 130199799 130199985 -25430135 + B2_Mm1a SINE B2 2 188 -5 5 1578 186 271 0 0 chr4 130200003 130200110 -25430010 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1578 306 280 0 0 chr4 130200132 130200307 -25429813 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 1578 1214 68 0 0 chr4 130200307 130200453 -25429667 + B1_Mus2 SINE Alu 2 147 0 5 1578 459 0 0 0 chr4 130200469 130200520 -25429600 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1578 701 277 87 16 chr4 130200522 130200775 -25429345 + ORR1D2 LTR MaLR 100 370 0 5 1578 1178 48 0 46 chr4 130200838 130200991 -25429129 + B1_Mm SINE Alu 2 147 0 5 1578 552 30 0 0 chr4 130201053 130201119 -25429001 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1578 320 351 157 21 chr4 130201183 130201419 -25428701 - B4 SINE B4 -24 268 1 5 1578 250 297 53 13 chr4 130201451 130201523 -25428597 - B4 SINE B4 -123 169 95 5 1578 544 259 0 0 chr4 130201523 130201631 -25428489 + RSINE1 SINE B4 4 111 -54 5 1578 908 174 0 26 chr4 130201642 130201795 -25428325 - B1_Mur1 SINE Alu 0 149 1 5 1578 1306 14 0 0 chr4 130202082 130202228 -25427892 - B1_Mus2 SINE Alu 0 147 2 5 1578 1179 90 55 22 chr4 130202236 130202417 -25427703 - B2_Mm2 SINE B2 -8 187 1 5 1578 498 154 29 191 chr4 130202515 130202651 -25427469 + B1_Mur4 SINE Alu 28 141 -9 5 1578 263 250 44 0 chr4 130202685 130202753 -25427367 - ID4 SINE ID -12 71 1 5 1578 485 310 60 48 chr4 130202755 130203006 -25427114 - Zaphod2 DNA Tip100 -1414 2110 1857 5 1578 351 292 0 102 chr4 130203071 130203189 -25426931 + PB1D7 SINE Alu 13 118 -2 5 1578 291 114 0 0 chr4 130203281 130203325 -25426795 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 5 1578 565 250 56 75 chr4 130203347 130203367 -25426753 - B4 SINE B4 -44 248 92 5 1578 1107 50 7 0 chr4 130203367 130203507 -25426613 - B1_Mus2 SINE Alu 0 147 7 5 1578 422 248 8 76 chr4 130203411 130203529 -25426591 - MT2B LTR ERVL -344 257 148 5 1578 294 239 8 50 chr4 130203573 130203692 -25426428 + CT-rich Low_complexity Low_complexity 2 115 0 5 1578 410 187 0 173 chr4 130203913 130204023 -25426097 - B1_Mur3 SINE Alu -7 142 52 5 1578 2007 138 30 3 chr4 130204038 130204373 -25425747 + RLTR15 LTR ERVK 13 356 -3 5 1578 674 88 0 0 chr4 130204381 130204472 -25425648 - 4.5SRNA scRNA scRNA -3 91 1 5 1578 341 170 0 0 chr4 130204489 130204542 -25425578 - PB1D9 SINE Alu -63 57 5 5 1578 550 282 105 52 chr4 130204561 130204752 -25425368 - B3 SINE B2 -6 210 10 5 1578 772 272 68 14 chr4 130204755 130204975 -25425145 - B4A SINE B4 -60 232 1 5 1578 1087 304 96 20 chr4 130204984 130205430 -25424690 - Zaphod2 DNA Tip100 -1801 1723 1244 5 1578 689 274 83 150 chr4 130205472 130205619 -25424501 + ORR1D2 LTR MaLR 4 128 -242 5 1578 1193 35 35 0 chr4 130205619 130205761 -25424359 - B1_Mm SINE Alu 0 147 1 5 1578 493 280 118 17 chr4 130205765 130205943 -25424177 - B3A SINE B2 0 198 3 5 1578 689 274 83 150 chr4 130205943 130206090 -25424030 + ORR1D2 LTR MaLR 129 283 -87 5 1578 1034 86 43 0 chr4 130206110 130206250 -25423870 - B1_Mm SINE Alu 0 147 2 5 1578 1316 97 32 0 chr4 130206254 130206439 -25423681 - B2_Mm1t SINE B2 -1 192 2 5 1578 471 190 0 0 chr4 130206442 130206521 -25423599 + ORR1D2 LTR MaLR 265 343 -27 5 1578 840 177 0 20 chr4 130206556 130206706 -25423414 - B1_Mur4 SINE Alu 0 150 4 5 1578 690 224 28 0 chr4 130206849 130206992 -25423128 - B1F2 SINE Alu -2 147 1 5 1578 297 0 0 0 chr4 130207046 130207079 -25423041 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1578 690 216 8 0 chr4 130207154 130207279 -25422841 + B1_Mur1 SINE Alu 24 149 0 5 1578 573 244 124 6 chr4 130207290 130207467 -25422653 - B3 SINE B2 -13 203 6 5 1578 903 56 2 81 chr4 130207743 130207891 -25422229 + B1_Mm SINE Alu 11 147 0 5 1578 208 154 87 43 chr4 130207906 130208021 -25422099 + (TTTAA)n Simple_repeat Simple_repeat 3 122 0 5 1578 684 176 98 49 chr4 130208023 130208166 -25421954 - B1_Mur4 SINE Alu 0 150 1 5 1578 652 62 4 11 chr4 130208169 130208265 -25421855 - B1_Mus2 SINE Alu -1 149 51 5 1578 361 267 25 191 chr4 130208227 130208252 -25421868 - ID_B1 SINE B4 -26 198 163 5 1578 515 206 49 0 chr4 130208252 130208354 -25421766 - B1_Mm SINE Alu -32 115 9 5 1578 361 267 25 191 chr4 130208354 130208463 -25421657 - ID_B1 SINE B4 -26 162 2 5 1578 383 210 37 0 chr4 130208463 130208526 -25421594 - PB1D7 SINE Alu -29 91 26 5 1578 261 0 0 0 chr4 130208829 130208858 -25421262 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5 1578 225 0 0 0 chr4 130208860 130208885 -25421235 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1578 1021 61 46 0 chr4 130208885 130209016 -25421104 - B1_Mus1 SINE Alu -11 137 1 5 1578 528 83 11 35 chr4 130209017 130209028 -25421092 - B1_Mur3 SINE Alu -1 148 140 5 1578 180 77 0 0 chr4 130209028 130209054 -25421066 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1578 528 83 11 35 chr4 130209054 130209129 -25420991 - B1_Mur3 SINE Alu -10 139 64 5 1578 1472 64 37 0 chr4 130209632 130209819 -25420301 + B2_Mm2 SINE B2 1 194 -1 5 1578 1125 75 0 13 chr4 130209853 130210002 -25420118 + B1_Mus2 SINE Alu 1 147 0 5 1578 616 275 80 64 chr4 130210021 130210394 -25419726 + L1M4 LINE L1 5446 5824 -360 5 1578 790 163 89 0 chr4 130210394 130210529 -25419591 + B1_Mus2 SINE Alu 1 147 0 5 1578 239 208 55 18 chr4 130210534 130210589 -25419531 - PB1 SINE Alu -47 73 17 5 1578 768 271 96 22 chr4 130210650 130210863 -25419257 + B4 SINE B4 1 230 -62 6 1578 759 220 16 12 chr4 130210863 130211045 -25419075 + B3 SINE B2 1 176 -19 6 1578 1291 83 0 37 chr4 130211046 130211233 -25418887 - B2_Mm2 SINE B2 -14 181 2 6 1578 228 111 0 0 chr4 130211251 130211287 -25418833 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1578 626 253 34 20 chr4 130211399 130211548 -25418572 + RSINE1 SINE B4 13 163 -2 6 1578 1257 28 0 7 chr4 130211592 130211738 -25418382 + B1_Mm SINE Alu 1 145 -2 6 1578 246 136 0 0 chr4 130211751 130211795 -25418325 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1578 363 399 0 7 chr4 130211879 130212023 -25418097 - ID_B1 SINE B4 -3 221 79 6 1578 540 0 0 0 chr4 130212043 130212103 -25418017 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1578 374 250 0 111 chr4 130212203 130212329 -25417791 - B3A SINE B2 0 198 87 6 1578 997 104 0 0 chr4 130212332 130212466 -25417654 + B1_Mur3 SINE Alu 3 136 -13 6 1578 180 111 0 0 chr4 130212469 130212496 -25417624 + (GGAGAA)n Simple_repeat Simple_repeat 4 30 0 6 1578 447 283 0 0 chr4 130212496 130212595 -25417525 - B3A SINE B2 -98 100 2 6 1578 250 136 0 22 chr4 130212619 130212664 -25417456 - RMER19B LTR ERVK 0 902 859 6 1578 1109 103 0 0 chr4 130212680 130212826 -25417294 - B1_Mus2 SINE Alu 0 147 2 6 1578 1542 153 8 4 chr4 130212827 130213076 -25417044 - RMER19B LTR ERVK -652 250 1 6 1578 684 275 25 12 chr4 130213077 130213239 -25416881 - B3A SINE B2 -30 168 5 6 1578 225 220 0 33 chr4 130213251 130213312 -25416808 + L1MB8 LINE L1 6089 6147 -31 6 1578 1483 77 0 5 chr4 130213314 130213509 -25416611 + B2_Mm2 SINE B2 1 194 -1 6 1578 370 279 77 0 chr4 130213618 130213722 -25416398 + PB1D7 SINE Alu 7 118 -2 6 1578 846 114 28 28 chr4 130213839 130213983 -25416137 - ORR1A2 LTR MaLR -183 144 1 6 1578 5509 90 51 10 chr4 130213983 130214805 -25415315 - ORR1A2-int LTR MaLR 0 1963 1108 6 1578 2178 111 6 0 chr4 130214787 130215102 -25415018 - ORR1A2-int LTR MaLR -1646 317 1 6 1578 723 89 154 63 chr4 130215102 130215245 -25414875 - ORR1A2 LTR MaLR 0 327 172 6 1578 385 186 0 0 chr4 130215245 130215304 -25414816 - ORR1A2 LTR MaLR -257 70 12 6 1578 255 146 0 0 chr4 130215321 130215362 -25414758 - B1_Mus2 SINE Alu -13 134 94 6 1578 580 255 0 113 chr4 130215522 130215677 -25414443 + B1F2 SINE Alu 1 137 -12 6 1578 1048 115 0 13 chr4 130215677 130215827 -25414293 + B1_Mus1 SINE Alu 1 148 0 6 1578 580 255 0 113 chr4 130215827 130215839 -25414281 + B1F2 SINE Alu 138 149 0 6 1578 21 0 0 0 chr4 130215970 130215991 -25414129 + AT_rich Low_complexity Low_complexity 1 21 0 6 1578 1095 52 8 0 chr4 130216448 130216582 -25413538 - B1_Mus1 SINE Alu -13 135 1 6 1578 863 155 7 13 chr4 130216590 130216740 -25413380 - B1_Mur3 SINE Alu 0 149 1 6 1578 749 113 33 72 chr4 130216801 130216852 -25413268 - BC1_Mm scRNA scRNA -5 147 97 6 1578 1097 96 0 14 chr4 130216852 130217000 -25413120 - B1_Mus2 SINE Alu 0 147 2 6 1578 749 113 33 72 chr4 130217000 130217101 -25413019 - BC1_Mm scRNA scRNA -56 96 1 6 1578 333 259 58 107 chr4 130217061 130217111 -25413009 - ZP3AR Satellite Satellite -77 135 58 6 1578 368 102 0 0 chr4 130217111 130217160 -25412960 - B2_Mm2 SINE B2 -145 50 2 6 1578 333 259 58 107 chr4 130217160 130217182 -25412938 - ZP3AR Satellite Satellite -77 57 21 6 1578 806 197 7 0 chr4 130217485 130217632 -25412488 + B1_Mus1 SINE Alu 1 148 0 6 1578 225 65 0 0 chr4 130217659 130217690 -25412430 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1578 541 207 238 32 chr4 130217991 130218176 -25411944 + ID_B1 SINE B4 1 223 -1 6 1578 915 167 0 7 chr4 130218186 130218337 -25411783 + B1_Mur4 SINE Alu 1 150 0 6 1578 261 0 0 0 chr4 130218362 130218391 -25411729 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1578 314 212 0 70 chr4 130218404 130218490 -25411630 + PB1D9 SINE Alu 41 120 0 6 1578 1248 81 64 0 chr4 130218493 130218665 -25411455 + B2_Mm2 SINE B2 2 184 -11 6 1578 363 274 37 19 chr4 130218720 130218828 -25411292 + MER45A DNA Tip100 69 178 0 6 1578 23 54 0 0 chr4 130219059 130219096 -25411024 + GC_rich Low_complexity Low_complexity 1 37 0 6 1578 180 0 0 0 chr4 130219179 130219199 -25410921 + (CCCG)n Simple_repeat Simple_repeat 4 23 0 6 1578 30 45 0 0 chr4 130219594 130219638 -25410482 + GC_rich Low_complexity Low_complexity 1 44 0 6 1578 691 115 25 22 chr4 130221443 130221563 -25408557 - B1_Mur4 SINE Alu -1 149 34 6 1578 612 103 234 0 chr4 130221607 130221714 -25408406 - B1_Mus2 SINE Alu -15 132 1 6 1578 387 0 0 0 chr4 130222026 130222069 -25408051 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1578 1096 80 0 0 chr4 130222069 130222206 -25407914 - B1_Mus2 SINE Alu -9 138 2 6 1578 186 43 0 0 chr4 130222427 130222450 -25407670 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1578 252 0 0 0 chr4 130222450 130222478 -25407642 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 6 1578 207 69 0 0 chr4 130222529 130222558 -25407562 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1578 1449 59 32 0 chr4 130222678 130222865 -25407255 - B2_Mm1t SINE B2 0 193 1 6 1578 273 314 74 54 chr4 130222987 130223135 -25406985 + B3A SINE B2 1 151 -47 6 1578 552 30 0 0 chr4 130223142 130223208 -25406912 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1578 216 0 0 0 chr4 130223208 130223231 -25406889 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1578 604 167 159 0 chr4 130223481 130223607 -25406513 + B1_Mur1 SINE Alu 4 149 0 6 1578 182 314 167 37 chr4 130223637 130223799 -25406321 + MIRb SINE MIR 34 216 -52 6 1578 528 267 22 30 chr4 130224272 130224407 -25405713 + ID_B1 SINE B4 91 224 0 6 1578 22 0 0 0 chr4 130224781 130224803 -25405317 + AT_rich Low_complexity Low_complexity 1 22 0 6 1578 30 0 0 0 chr4 130225795 130225825 -25404295 + AT_rich Low_complexity Low_complexity 1 30 0 6 1578 218 263 146 100 chr4 130225826 130225936 -25404184 - PB1D9 SINE Alu -5 115 1 6 1578 1100 68 7 20 chr4 130225942 130226091 -25404029 - B1_Mus2 SINE Alu 0 147 1 6 1578 234 0 0 0 chr4 130226091 130226117 -25404003 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1578 271 228 38 0 chr4 130226216 130226295 -25403825 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1578 698 132 45 30 chr4 130226335 130226468 -25403652 - B1_Mur4 SINE Alu 0 150 16 6 1578 452 333 70 14 chr4 130226467 130226680 -25403440 - B4A SINE B4 -67 225 1 6 1578 1089 74 86 0 chr4 130226688 130226850 -25403270 - B2_Mm2 SINE B2 -19 176 1 6 1578 43 0 0 0 chr4 130226855 130226898 -25403222 + AT_rich Low_complexity Low_complexity 1 43 0 6 1578 722 138 0 24 chr4 130227037 130227163 -25402957 - B1_Mur3 SINE Alu -10 139 17 6 1578 608 140 9 27 chr4 130227543 130227653 -25402467 + B1_Mur3 SINE Alu 41 148 -1 6 1578 1192 56 0 0 chr4 130228949 130229092 -25401028 - B1_Mus2 SINE Alu -3 144 2 6 1578 596 91 23 0 chr4 130229253 130229341 -25400779 - B2_Mm2 SINE B2 -103 92 3 6 1578 336 214 18 125 chr4 130229422 130229534 -25400586 - PB1D9 SINE Alu -1 119 20 6 1578 1433 77 16 0 chr4 130229689 130229872 -25400248 + B2_Mm2 SINE B2 1 186 -9 6 1578 882 180 25 45 chr4 130229893 130230091 -25400029 - B3 SINE B2 -21 195 2 6 1578 877 176 14 7 chr4 130230118 130230261 -25399859 - B1_Mur4 SINE Alu -6 144 1 6 1578 277 241 62 25 chr4 130230295 130230376 -25399744 - PB1D10 SINE Alu -7 110 27 6 1578 354 231 169 24 chr4 130230431 130230555 -25399565 - B1F2 SINE Alu -7 142 1 6 1578 293 276 4 31 chr4 130230612 130230725 -25399395 + B1F SINE Alu 1 110 -7 6 1578 22 0 0 0 chr4 130231142 130231164 -25398956 + AT_rich Low_complexity Low_complexity 1 22 0 6 1578 1170 55 0 7 chr4 130231940 130232088 -25398032 + B1_Mus1 SINE Alu 2 148 0 6 1578 481 144 10 62 chr4 130232199 130232295 -25397825 - B1_Mur1 SINE Alu 0 149 59 6 1578 275 146 269 15 chr4 130232657 130232737 -25397383 - PB1D10 SINE Alu 0 117 26 6 1578 1029 222 34 0 chr4 130233425 130233632 -25396488 - B3 SINE B2 -2 214 1 6 1578 783 173 35 14 chr4 130233964 130234105 -25396015 + B1_Mur2 SINE Alu 1 144 -5 6 1578 342 0 0 0 chr4 130234288 130234326 -25395794 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1578 246 308 101 40 chr4 130234390 130234539 -25395581 - B4 SINE B4 -114 178 21 6 1578 600 161 42 8 chr4 130234579 130234698 -25395422 - B1_Mus2 SINE Alu -22 125 3 6 1578 728 128 27 47 chr4 130234734 130234882 -25395238 - B1_Mur3 SINE Alu 0 149 5 6 1578 809 78 0 9 chr4 130235392 130235508 -25394612 - B1_Mus1 SINE Alu -33 115 1 6 1578 641 236 132 0 chr4 130235527 130235709 -25394411 - B3 SINE B2 -6 210 5 6 1578 368 20 20 0 chr4 130235716 130235765 -25394355 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1578 462 276 31 25 chr4 130235765 130235925 -25394195 - B3A SINE B2 -37 161 1 6 1578 656 73 456 8 chr4 130235943 130236068 -25394052 - B2_Mm2 SINE B2 -14 181 1 6 1578 318 287 164 0 chr4 130236130 130236252 -25393868 - B3A SINE B2 -35 163 22 6 1578 901 99 39 13 chr4 130236377 130236530 -25393590 - B2_Mm2 SINE B2 -3 192 36 6 1578 1088 76 14 0 chr4 130236551 130236696 -25393424 - B1_Mus2 SINE Alu 0 147 1 6 1578 301 160 0 0 chr4 130236706 130236756 -25393364 - B2_Mm2 SINE B2 -144 51 2 6 1578 189 0 0 0 chr4 130236756 130236777 -25393343 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1578 338 288 65 41 chr4 130236788 130236911 -25393209 - ID_B1 SINE B4 -84 140 15 6 1578 180 0 0 0 chr4 130237140 130237160 -25392960 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1578 989 96 7 52 chr4 130237211 130237365 -25392755 - B1_Mus1 SINE Alu 0 148 2 6 1578 1308 98 11 5 chr4 130237540 130237724 -25392396 - B2_Mm1t SINE B2 -7 186 2 6 1578 960 8 8 0 chr4 130237759 130237880 -25392240 - B1_Mus1 SINE Alu 0 148 27 6 1578 684 172 58 22 chr4 130238049 130238186 -25391934 + B1_Mus1 SINE Alu 1 142 -6 6 1578 362 289 26 9 chr4 130238431 130238546 -25391574 - L1M2 LINE L1 -514 5783 5667 7 1578 955 219 185 5 chr4 130238560 130238866 -25391254 - ORR1D2 LTR MaLR 0 370 12 7 1578 555 204 396 40 chr4 130238856 130239213 -25390907 - RMER4B LTR ERVK -48 563 33 7 1578 1452 69 27 0 chr4 130239218 130239406 -25390714 - B2_Mm1a SINE B2 0 193 1 7 1578 1243 34 0 0 chr4 130239566 130239712 -25390408 - B1_Mus2 SINE Alu 0 147 2 7 1578 183 244 22 0 chr4 130239878 130239923 -25390197 + L2c LINE L2 3324 3369 -18 7 1578 413 292 23 91 chr4 130240131 130240221 -25389899 + RSINE1 SINE B4 27 119 -46 7 1578 1322 105 21 5 chr4 130240221 130240413 -25389707 + B2_Mm2 SINE B2 1 195 0 7 1578 413 292 23 91 chr4 130240413 130240454 -25389666 + RSINE1 SINE B4 120 149 -16 7 1578 283 206 46 31 chr4 130240544 130240609 -25389511 + B1F SINE Alu 18 83 -66 7 1578 851 209 116 9 chr4 130240687 130240994 -25389126 + ORR1C1 LTR MaLR 5 378 0 7 1578 457 244 154 0 chr4 130241132 130241255 -25388865 - B1_Mur1 SINE Alu -7 142 1 7 1578 309 281 31 20 chr4 130241262 130241360 -25388760 - PB1D10 SINE Alu -5 112 14 7 1578 627 179 9 0 chr4 130241407 130241519 -25388601 - PB1D9 SINE Alu -7 113 1 7 1578 245 338 42 0 chr4 130241569 130241640 -25388480 - AluF_3 SINE Alu -101 210 137 7 1578 471 288 61 0 chr4 130241853 130241985 -25388135 - RSINE1 SINE B4 -25 140 1 7 1578 1200 61 0 0 chr4 130242088 130242235 -25387885 + B1_Mm SINE Alu 1 147 0 7 1578 190 73 0 47 chr4 130242236 130242279 -25387841 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 7 1578 358 342 75 0 chr4 130242285 130242405 -25387715 + B3A SINE B2 38 166 -32 7 1578 6405 108 72 50 chr4 130242535 130242781 -25387339 - RMER16-int LTR ERVK -83 5323 5087 7 1578 1268 27 0 0 chr4 130242781 130242928 -25387192 - B1_Mm SINE Alu 0 147 1 7 1578 6405 108 72 50 chr4 130242928 130243761 -25386359 - RMER16-int LTR ERVK -320 5086 4220 7 1578 1281 154 9 5 chr4 130244242 130244457 -25385663 - RMER16-int LTR ERVK -1433 3973 3758 7 1578 3420 112 44 18 chr4 130244440 130244987 -25385133 - RMER16-int LTR ERVK -2358 3048 2488 7 1578 1864 136 55 18 chr4 130244984 130245390 -25384730 - RMER16-int LTR ERVK -3905 1501 958 7 1578 1409 73 10 16 chr4 130245390 130245584 -25384536 - B2_Mm2 SINE B2 0 195 3 7 1578 216 0 0 0 chr4 130245596 130245620 -25384500 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1578 1203 28 0 0 chr4 130245622 130245763 -25384357 - B1_Mus1 SINE Alu -6 142 2 7 1578 352 252 136 0 chr4 130245764 130245867 -25384253 - B1_Mur4 SINE Alu -23 127 11 7 1578 21 0 0 0 chr4 130246121 130246142 -25383978 + AT_rich Low_complexity Low_complexity 1 21 0 7 1578 331 219 226 40 chr4 130246191 130246204 -25383916 + ID_B1 SINE B4 78 224 0 7 1578 590 173 18 9 chr4 130246204 130246315 -25383805 + PB1D9 SINE Alu 9 120 0 7 1578 214 100 39 20 chr4 130246315 130246366 -25383754 + A-rich Low_complexity Low_complexity 5 56 0 7 1578 1061 70 7 34 chr4 130246472 130246620 -25383500 + B1_Mus1 SINE Alu 5 148 0 7 1578 186 143 0 0 chr4 130246622 130246657 -25383463 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1578 1719 26 0 0 chr4 130246657 130246850 -25383270 + B2_Mm1a SINE B2 1 193 0 7 1578 971 227 183 18 chr4 130246941 130247223 -25382897 + ORR1C2 LTR MaLR 3 328 -56 7 1578 216 0 0 0 chr4 130247223 130247247 -25382873 + (CTATA)n Simple_repeat Simple_repeat 2 25 0 7 1578 971 227 183 18 chr4 130247247 130247292 -25382828 + ORR1C2 LTR MaLR 329 383 -1 7 1578 1940 147 187 32 chr4 130247294 130247696 -25382424 - RMER4A LTR ERVK -2 464 1 7 1578 824 213 22 60 chr4 130247758 130247943 -25382177 - B3A SINE B2 -18 180 3 7 1578 343 271 167 28 chr4 130248178 130248322 -25381798 - RSINE1 SINE B4 0 165 2 7 1578 533 261 72 7 chr4 130248456 130248595 -25381525 + B3A SINE B2 1 148 -50 7 1578 306 73 0 0 chr4 130248595 130248636 -25381484 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1578 265 246 108 50 chr4 130248918 130249038 -25381082 - L1M5 LINE L1 -435 5689 5563 7 1578 1085 87 91 11 chr4 130249164 130249339 -25380781 - B2_Mm1t SINE B2 -4 189 1 7 1578 247 149 0 21 chr4 130249484 130249532 -25380588 - B1_Mus2 SINE Alu -25 122 76 7 1578 480 213 221 17 chr4 130249667 130249839 -25380281 - B3 SINE B2 -1 215 9 7 1578 783 167 41 7 chr4 130250443 130250588 -25379532 - B1_Mur4 SINE Alu 0 150 1 7 1578 1553 202 166 30 chr4 130250775 130251281 -25378839 - RMER15 LTR ERVL 0 575 1 7 1578 300 27 0 0 chr4 130251487 130251524 -25378596 + (ATTG)n Simple_repeat Simple_repeat 1 37 0 7 1578 879 66 0 24 chr4 130251557 130251681 -25378439 - B2_Mm2 SINE B2 -70 125 5 7 1578 2389 167 40 60 chr4 130251893 130252122 -25377998 - RLTR17 LTR ERVK -173 519 297 7 1578 1196 48 0 7 chr4 130252122 130252270 -25377850 - B1_Mus2 SINE Alu 0 147 1 7 1578 2389 167 40 60 chr4 130252270 130252570 -25377550 - RLTR17 LTR ERVK -396 296 1 7 1578 4774 75 16 8 chr4 130252603 130253247 -25376873 - L1Md_F2 LINE L1 -11 6571 5923 7 1578 815 60 0 0 chr4 130253263 130253379 -25376741 - B1_Mm SINE Alu 0 147 32 7 1578 21 0 0 0 chr4 130253379 130253400 -25376720 + AT_rich Low_complexity Low_complexity 1 21 0 7 1578 1144 111 12 6 chr4 130253545 130253717 -25376403 - B2_Mm1t SINE B2 -19 174 2 7 1578 331 175 504 0 chr4 130253992 130254135 -25375985 + B3 SINE B2 2 216 0 7 1578 1179 50 0 36 chr4 130254499 130254665 -25375455 - L1Md_F2 LINE L1 -8 6574 6415 7 1578 432 0 0 0 chr4 130255173 130255221 -25374899 + (CTA)n Simple_repeat Simple_repeat 2 49 0 7 1578 361 147 20 31 chr4 130255221 130255319 -25374801 + CT-rich Low_complexity Low_complexity 2 98 0 7 1578 1047 22 88 15 chr4 130255320 130255456 -25374664 - B1_Mus1 SINE Alu 0 148 3 7 1578 1764 10 0 0 chr4 130255568 130255761 -25374359 - B2_Mm1a SINE B2 0 193 1 7 1578 594 152 43 21 chr4 130255768 130255909 -25374211 - B1_Mur3 SINE Alu 0 149 6 7 1578 329 283 54 68 chr4 130255785 130255933 -25374187 - B4 SINE B4 -80 212 67 7 1578 315 213 0 0 chr4 130256324 130256385 -25373735 - RSINE1 SINE B4 -30 135 75 7 1578 405 233 11 0 chr4 130258304 130258394 -25371726 + PB1D10 SINE Alu 1 91 -26 7 1578 647 233 247 52 chr4 130258399 130258707 -25371413 - ORR1D2 LTR MaLR 0 370 3 7 1578 1084 102 0 0 chr4 130259371 130259518 -25370602 - B1_Mus1 SINE Alu 0 148 2 7 1578 694 182 14 27 chr4 130259596 130259743 -25370377 - B1_Mus1 SINE Alu -2 146 2 7 1578 861 200 0 100 chr4 130259827 130260066 -25370054 - B3 SINE B2 -1 215 1 7 1578 244 89 0 0 chr4 130260325 130260370 -25369750 - B3 SINE B2 -2 214 170 7 1578 1240 48 0 0 chr4 130260453 130260600 -25369520 - B1_Mus2 SINE Alu 0 147 1 7 1578 641 165 37 8 chr4 130261054 130261188 -25368932 - B1_Mur4 SINE Alu 0 150 13 7 1578 227 263 41 66 chr4 130261081 130261203 -25368917 - MT2B LTR ERVL -323 278 160 7 1578 342 315 0 0 chr4 130261217 130261309 -25368811 - B1F SINE Alu -45 104 13 7 1578 325 227 120 0 chr4 130261370 130261445 -25368675 - ID_B1 SINE B4 -13 211 128 7 1578 1050 124 0 0 chr4 130261624 130261769 -25368351 - B1_Mus1 SINE Alu 0 148 4 7 1578 679 196 224 6 chr4 130261803 130261977 -25368143 + B3 SINE B2 5 216 0 7 1578 279 180 11 11 chr4 130262135 130262204 -25367916 - PB1D9 SINE Alu -70 77 9 7 1578 394 292 137 8 chr4 130262823 130262954 -25367166 - ID_B1 SINE B4 -75 149 2 7 1578 492 220 120 8 chr4 130263134 130263267 -25366853 - B1_Mus1 SINE Alu 0 148 1 7 1578 214 320 92 10 chr4 130263604 130263702 -25366418 - PB1D9 SINE Alu -14 106 1 7 1578 263 351 26 17 chr4 130263849 130263965 -25366155 - PB1D10 SINE Alu 0 117 1 7 1578 271 262 50 0 chr4 130264658 130264738 -25365382 - PB1D9 SINE Alu -7 113 30 7 1578 218 216 0 19 chr4 130264923 130264975 -25365145 + CT-rich Low_complexity Low_complexity 4 54 0 7 1578 548 124 22 11 chr4 130264978 130265068 -25365052 - PB1D9 SINE Alu -8 112 22 7 1578 277 241 0 108 chr4 130264992 130265085 -25365035 - MT2B LTR ERVL -350 251 169 7 1578 256 212 242 17 chr4 130265068 130265098 -25365022 - B4 SINE B4 -74 218 72 7 1578 225 0 0 0 chr4 130265588 130265613 -25364507 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1578 500 211 67 52 chr4 130266234 130266421 -25363699 + B3 SINE B2 7 195 0 7 1578 268 227 67 0 chr4 130266500 130266575 -25363545 + ID2 SINE ID 2 81 -2 7 1578 226 185 261 0 chr4 130266728 130266793 -25363327 + B1_Mur4 SINE Alu 52 133 -17 7 1578 203 147 0 0 chr4 130267207 130267241 -25362879 + (C)n Simple_repeat Simple_repeat 1 34 0 7 1578 242 278 125 0 chr4 130267374 130267446 -25362674 - RSINE1 SINE B4 -81 84 4 7 1578 194 91 0 29 chr4 130267490 130267524 -25362596 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 7 1578 249 239 105 32 chr4 130267556 130267651 -25362469 - PB1D10 SINE Alu -10 107 6 7 1578 23 0 0 0 chr4 130268107 130268130 -25361990 + AT_rich Low_complexity Low_complexity 1 23 0 7 1578 485 192 137 32 chr4 130268435 130268559 -25361561 - B1_Mus1 SINE Alu -10 138 2 7 1578 1212 61 0 0 chr4 130268593 130268740 -25361380 - B1_Mus1 SINE Alu 0 148 2 7 1578 380 279 10 0 chr4 130269731 130269835 -25360285 + B1F SINE Alu 10 114 -35 7 1578 289 266 102 52 chr4 130269744 130269909 -25360211 + ID_B1 SINE B4 104 283 -9 7 1578 390 21 0 0 chr4 130269913 130269960 -25360160 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1578 275 95 0 0 chr4 130270422 130270464 -25359656 - B1_Mm SINE Alu 0 147 106 7 1578 279 128 0 21 chr4 130270457 130270505 -25359615 - B1_Mus1 SINE Alu -92 56 10 7 1578 381 336 93 0 chr4 130270692 130270875 -25359245 - MLT1F2 LTR MaLR -173 507 209 7 1578 321 125 0 0 chr4 130271515 130271571 -25358549 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1578 396 0 0 0 chr4 130271571 130271614 -25358506 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1578 400 208 47 56 chr4 130271614 130271721 -25358399 - RSINE1 SINE B4 -48 117 12 8 1578 210 200 0 0 chr4 130272322 130272362 -25357758 - B3 SINE B2 -103 113 74 8 1578 822 249 62 0 chr4 130272374 130272567 -25357553 - B3 SINE B2 -11 205 1 8 1578 210 105 0 0 chr4 130272573 130272611 -25357509 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1578 335 41 0 20 chr4 130275759 130275809 -25354311 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1578 398 204 42 21 chr4 130278529 130278624 -25351496 - PB1D10 SINE Alu 0 117 21 8 1578 189 243 257 0 chr4 130279203 130279277 -25350843 - MIRc SINE MIR -61 207 115 8 1578 226 273 136 0 chr4 130280240 130280306 -25349814 - MIRc SINE MIR -114 154 80 8 1578 727 238 88 5 chr4 130280464 130280658 -25349462 - B3 SINE B2 -5 211 2 8 1578 565 200 96 0 chr4 130280784 130280899 -25349221 - B1_Mur4 SINE Alu -24 126 1 8 1578 712 184 80 14 chr4 130281118 130281256 -25348864 - B1_Mur3 SINE Alu -1 148 2 8 1578 240 163 0 0 chr4 130281296 130281339 -25348781 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1578 511 246 40 60 chr4 130283108 130283259 -25346861 + B1F1 SINE Alu 2 149 0 8 1578 354 123 0 0 chr4 130283472 130283529 -25346591 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 8 1578 234 0 0 0 chr4 130283530 130283556 -25346564 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1578 475 235 31 0 chr4 130284560 130284658 -25345462 - B1F1 SINE Alu -47 102 2 8 1578 249 306 17 92 chr4 130284658 130284679 -25345441 - MT2B2 LTR ERVL -329 255 146 8 1578 225 0 0 0 chr4 130285181 130285206 -25344914 + (ATG)n Simple_repeat Simple_repeat 2 26 0 8 1578 198 91 0 0 chr4 130285240 130285273 -25344847 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1579 224 238 0 0 chr4 130285755 130285797 -25344323 - B1F2 SINE Alu -106 43 2 8 1579 817 270 63 21 chr4 130286791 130287029 -25343091 + B4A SINE B4 1 248 -44 8 1579 323 314 7 69 chr4 130287331 130287475 -25342645 - B4A SINE B4 -6 286 152 8 1579 296 183 99 0 chr4 130287613 130287684 -25342436 - B1F SINE Alu 0 149 72 8 1579 360 299 146 6 chr4 130287695 130287860 -25342260 - B3 SINE B2 -24 192 5 8 1579 211 176 0 0 chr4 130287884 130287918 -25342202 - PB1D7 SINE Alu -82 38 5 8 1579 1084 101 17 17 chr4 130288493 130288656 -25341464 + B2_Mm2 SINE B2 14 179 -16 8 1579 209 30 61 0 chr4 130288664 130288697 -25341423 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1579 1254 34 0 0 chr4 130288697 130288836 -25341284 - B1_Mus1 SINE Alu -8 140 2 8 1579 2104 158 53 41 chr4 130289131 130289547 -25340573 - MTC LTR MaLR 0 421 1 8 1579 723 232 284 14 chr4 130289823 130290112 -25340008 - ORR1D2 LTR MaLR 0 370 4 8 1579 513 186 0 20 chr4 130290810 130290909 -25339211 + B3A SINE B2 4 100 -98 8 1579 397 223 151 0 chr4 130290927 130291037 -25339083 - B1_Mur2 SINE Alu -21 127 5 8 1579 252 0 0 0 chr4 130291406 130291434 -25338686 + (CATA)n Simple_repeat Simple_repeat 1 28 0 8 1579 311 281 139 46 chr4 130293113 130293221 -25336899 - ID_B1 SINE B4 -11 213 96 8 1579 263 347 31 10 chr4 130293218 130293314 -25336806 + B3A SINE B2 76 173 -25 8 1579 396 226 34 34 chr4 130293428 130293547 -25336573 - B1_Mur2 SINE Alu 0 149 31 8 1579 279 71 0 0 chr4 130293783 130293825 -25336295 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 8 1579 236 170 85 0 chr4 130293826 130293873 -25336247 - B1F2 SINE Alu -45 104 54 8 1579 333 296 25 0 chr4 130295395 130295476 -25334644 - ID4 SINE ID 0 83 1 8 1579 693 169 32 8 chr4 130295877 130296002 -25334118 + B3 SINE B2 1 128 -88 8 1579 248 238 0 140 chr4 130296053 130296102 -25334018 - B3 SINE B2 -2 214 173 8 1579 366 23 0 0 chr4 130296102 130296145 -25333975 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1579 265 196 696 60 chr4 130296145 130296247 -25333873 - B3A SINE B2 -44 172 6 8 1579 343 283 15 84 chr4 130297552 130297683 -25332437 + B1F2 SINE Alu 28 149 0 8 1579 522 216 10 0 chr4 130297908 130298010 -25332110 + PB1D9 SINE Alu 6 108 -12 8 1579 381 284 27 9 chr4 130298216 130298326 -25331794 - PB1D7 SINE Alu -7 113 2 8 1579 295 179 156 1 chr4 130298909 130298985 -25331135 + B1F1 SINE Alu 24 106 -11 8 1579 573 291 108 14 chr4 130298997 130299210 -25330910 + B4A SINE B4 2 234 -58 8 1579 380 108 181 0 chr4 130299244 130299327 -25330793 + URR1B DNA MER1_type 128 225 0 8 1579 222 191 0 0 chr4 130299370 130299412 -25330708 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1579 419 278 9 0 chr4 130302494 130302602 -25327518 + PB1D10 SINE Alu 2 110 -7 8 1579 189 121 0 0 chr4 130303164 130303197 -25326923 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1579 562 239 20 27 chr4 130303303 130303449 -25326671 - B4 SINE B4 -35 257 113 8 1579 448 248 38 0 chr4 130303549 130303654 -25326466 - B1_Mus2 SINE Alu -37 110 2 8 1579 263 136 0 0 chr4 130303663 130303707 -25326413 + B1_Mus2 SINE Alu 89 132 -15 8 1579 591 281 157 19 chr4 130303728 130303989 -25326131 - ORR1D1 LTR MaLR -75 299 3 8 1579 361 267 19 56 chr4 130304032 130304139 -25325981 + ID_B1 SINE B4 3 105 -119 8 1579 807 214 64 15 chr4 130304341 130304545 -25325575 - B3 SINE B2 0 216 3 8 1579 207 312 47 0 chr4 130304657 130304721 -25325399 + polypyrimidine Low_complexity Low_complexity 4 70 0 8 1579 281 239 0 21 chr4 130304724 130304794 -25325326 - B1_Mus1 SINE Alu -83 66 2 8 1579 230 341 22 33 chr4 130304794 130304825 -25325295 - B4 SINE B4 -208 84 55 8 1579 1386 95 11 0 chr4 130304936 130305126 -25324994 + B2_Mm1t SINE B2 2 193 0 8 1579 330 102 0 0 chr4 130305135 130305184 -25324936 + B1_Mus1 SINE Alu 3 51 -97 8 1579 1564 173 108 15 chr4 130306663 130307004 -25323116 - ORR1D1 LTR MaLR 0 374 2 8 1579 255 280 116 45 chr4 130307167 130307279 -25322841 - Tigger7 DNA MER2_type -2317 174 55 8 1579 369 269 9 88 chr4 130307940 130308054 -25322066 + PB1D9 SINE Alu 9 113 -7 8 1579 183 100 0 0 chr4 130308579 130308609 -25321511 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 8 1579 207 0 0 0 chr4 130310683 130310706 -25319414 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 8 1579 29 0 0 0 chr4 130311552 130311581 -25318539 + AT_rich Low_complexity Low_complexity 1 29 0 8 1579 971 205 0 39 chr4 130311581 130311789 -25318331 - B3 SINE B2 -14 202 3 8 1579 717 145 22 44 chr4 130312423 130312560 -25317560 - B1_Mur4 SINE Alu -15 135 2 8 1579 365 151 27 14 chr4 130312632 130312706 -25317414 - PB1D9 SINE Alu 0 120 46 8 1579 224 197 115 90 chr4 130313231 130313309 -25316811 - B3 SINE B2 -121 95 16 8 1579 1924 105 45 22 chr4 130313516 130313828 -25316292 + ORR1A2 LTR MaLR 1 319 -8 8 1579 225 0 0 0 chr4 130314172 130314197 -25315923 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1579 241 181 68 14 chr4 130314256 130314329 -25315791 - L1MD LINE L1 -2540 3606 3530 8 1579 1041 97 7 0 chr4 130314346 130314491 -25315629 - B1_Mus2 SINE Alu 0 147 2 8 1579 582 165 133 8 chr4 130314597 130314725 -25315395 - B1_Mus1 SINE Alu -1 147 4 8 1579 258 83 172 62 chr4 130314748 130314812 -25315308 - B1_Mur2 SINE Alu 0 149 79 8 1579 247 100 18 107 chr4 130314847 130314903 -25315217 - L1M4 LINE L1 -2709 3437 3387 8 1579 337 178 32 25 chr4 130315535 130315628 -25314492 - PB1D7 SINE Alu 0 120 32 8 1579 229 308 51 0 chr4 130315857 130315935 -25314185 + ID2 SINE ID 1 82 -1 8 1579 335 346 38 16 chr4 130316539 130316724 -25313396 - MLT1L LTR MaLR -8 602 414 8 1579 249 237 17 0 chr4 130317561 130317620 -25312500 - ID4_ SINE ID -22 61 2 8 1579 964 55 86 0 chr4 130317987 130318115 -25312005 + B1_Mus2 SINE Alu 1 139 -8 8 1579 320 238 12 48 chr4 130318273 130318357 -25311763 - ID4 SINE ID 0 83 3 8 1579 209 204 0 0 chr4 130318400 130318449 -25311671 + A-rich Low_complexity Low_complexity 1 49 0 8 1579 221 324 29 14 chr4 130319246 130319315 -25310805 + B1F1 SINE Alu 3 72 -77 8 1579 417 129 69 23 chr4 130319764 130319851 -25310269 + PB1D9 SINE Alu 29 119 -1 8 1579 541 144 0 62 chr4 130320346 130320442 -25309678 - B1_Mur2 SINE Alu -57 92 3 8 1579 461 254 22 36 chr4 130320502 130320641 -25309479 - B3 SINE B2 -79 137 1 8 1579 270 250 27 63 chr4 130322528 130322639 -25307481 + PB1D7 SINE Alu 2 108 -12 8 1579 237 302 86 8 chr4 130324079 130324196 -25305924 - B1_Mur4 SINE Alu -23 127 2 8 1579 1422 60 49 0 chr4 130324203 130324386 -25305734 - B2_Mm2 SINE B2 0 195 4 8 1579 189 0 0 0 chr4 130324387 130324408 -25305712 + (C)n Simple_repeat Simple_repeat 1 21 0 8 1579 238 267 189 16 chr4 130324415 130324537 -25305583 - B1F SINE Alu -6 143 1 8 1579 240 59 0 0 chr4 130325374 130325408 -25304712 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1579 709 247 124 62 chr4 130325673 130325850 -25304270 + B3A SINE B2 1 188 -7 8 1579 21 57 0 0 chr4 130325858 130325893 -25304227 + AT_rich Low_complexity Low_complexity 1 35 0 8 1579 26 0 0 0 chr4 130326126 130326152 -25303968 + AT_rich Low_complexity Low_complexity 1 26 0 8 1579 1044 278 25 58 chr4 130326319 130326750 -25303370 - BGLII_B LTR ERVK -20 421 5 9 1579 345 244 0 13 chr4 130327053 130327132 -25302988 + ID4_ SINE ID 3 80 -3 9 1579 212 250 21 0 chr4 130327367 130327415 -25302705 - B1_Mus2 SINE Alu -98 49 1 9 1579 207 0 0 0 chr4 130327473 130327496 -25302624 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1579 459 176 88 0 chr4 130327497 130327599 -25302521 - B1_Mus1 SINE Alu 0 148 38 9 1579 180 184 0 0 chr4 130328481 130328530 -25301590 + T-rich Low_complexity Low_complexity 1 49 0 9 1579 558 43 0 0 chr4 130328735 130328804 -25301316 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 1579 266 296 28 0 chr4 130328813 130328884 -25301236 - RSINE1 SINE B4 -11 154 82 9 1579 232 208 0 20 chr4 130330824 130330873 -25299247 - RSINE1 SINE B4 -99 66 19 9 1579 263 174 0 0 chr4 130330923 130330969 -25299151 - ID4_ SINE ID -29 54 9 9 1579 264 299 0 0 chr4 130330996 130331063 -25299057 - PB1D10 SINE Alu -39 78 12 9 1579 478 280 71 16 chr4 130331952 130332079 -25298041 - RSINE1 SINE B4 -19 146 13 9 1579 597 197 411 24 chr4 130333026 130333321 -25296799 - MTD LTR MaLR -16 403 3 9 1579 1242 211 103 60 chr4 130333348 130333746 -25296374 - MTC-int LTR MaLR -60 1198 784 9 1579 1071 226 174 25 chr4 130333747 130333776 -25296344 - RMER16 LTR ERVK -1 532 495 9 1579 204 40 0 0 chr4 130333776 130333801 -25296319 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 9 1579 1071 226 174 25 chr4 130333801 130334134 -25295986 - RMER16 LTR ERVK -39 494 117 9 1579 1481 238 170 85 chr4 130334130 130334527 -25295593 - MTD-int LTR MaLR -530 1050 373 9 1579 1261 40 0 0 chr4 130334527 130334675 -25295445 - B1_Mus1 SINE Alu 0 148 1 9 1579 1481 231 178 87 chr4 130334675 130334969 -25295151 - MTD-int LTR MaLR -886 372 2 9 1579 1460 184 146 16 chr4 130334974 130335338 -25294782 - MTD LTR MaLR -8 411 1 9 1579 23 0 0 0 chr4 130336249 130336272 -25293848 + AT_rich Low_complexity Low_complexity 1 23 0 9 1579 228 67 0 0 chr4 130336332 130336362 -25293758 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 1579 508 164 46 12 chr4 130337990 130338118 -25292002 + B1_Mur3 SINE Alu 1 142 -7 9 1579 298 305 125 17 chr4 130339244 130339364 -25290756 + ID_B1 SINE B4 78 210 -14 9 1579 279 0 0 0 chr4 130339616 130339647 -25290473 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1579 624 209 5 133 chr4 130340023 130340211 -25289909 + RSINE1 SINE B4 2 165 0 9 1579 714 193 7 13 chr4 130340207 130340359 -25289761 + B3A SINE B2 32 182 -16 9 1579 309 51 0 0 chr4 130340394 130340433 -25289687 + HAL1-3A_ME LINE L1 1974 2012 -846 9 1579 475 224 0 18 chr4 130340433 130340542 -25289578 + B3A SINE B2 47 153 -45 9 1579 198 0 0 0 chr4 130340546 130340568 -25289552 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1579 517 273 70 25 chr4 130340568 130340726 -25289394 + B3 SINE B2 52 216 0 9 1579 370 353 15 8 chr4 130342247 130342381 -25287739 + CT-rich Low_complexity Low_complexity 1 135 0 9 1579 309 284 29 80 chr4 130343870 130344008 -25286112 + MT2B LTR ERVL 146 276 -325 9 1579 625 214 8 0 chr4 130343898 130344024 -25286096 + B1_Mur1 SINE Alu 10 136 -13 9 1579 28 48 0 0 chr4 130344024 130344066 -25286054 + AT_rich Low_complexity Low_complexity 1 42 0 9 1579 462 287 57 40 chr4 130344070 130344256 -25285864 + B3A SINE B2 9 179 -16 9 1579 243 305 36 11 chr4 130344269 130344381 -25285739 + MIRb SINE MIR 33 152 -116 9 1579 225 0 0 0 chr4 130344950 130344975 -25285145 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1579 1073 150 77 10 chr4 130344977 130345185 -25284935 - MTD LTR MaLR -2 417 196 9 1579 718 146 14 7 chr4 130345185 130345323 -25284797 + CT-rich Low_complexity Low_complexity 2 140 0 9 1579 730 184 19 52 chr4 130345332 130345487 -25284633 - B1_Mur4 SINE Alu 0 150 1 9 1579 294 29 0 0 chr4 130345494 130345529 -25284591 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 1579 1211 168 36 0 chr4 130345530 130345726 -25284394 - B3 SINE B2 -13 203 1 9 1579 808 209 78 17 chr4 130345726 130345906 -25284214 - MTD LTR MaLR -211 208 18 9 1579 252 77 0 0 chr4 130346555 130346594 -25283526 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1579 1003 109 7 0 chr4 130346594 130346731 -25283389 - B1_Mus1 SINE Alu -9 139 2 9 1579 259 182 55 0 chr4 130346828 130346883 -25283237 + L2c LINE L2 3330 3387 0 9 1579 292 256 64 87 chr4 130346891 130347044 -25283076 - MIRb SINE MIR -110 158 7 9 1579 663 218 232 11 chr4 130347165 130347346 -25282774 + ID_B1 SINE B4 1 221 -3 9 1579 409 278 67 56 chr4 130347379 130347589 -25282531 - B3A SINE B2 0 216 1 9 1579 342 204 92 101 chr4 130347596 130347705 -25282415 - PB1D10 SINE Alu -9 108 1 9 1579 237 65 0 0 chr4 130348428 130348459 -25281661 + (CGG)n Simple_repeat Simple_repeat 2 32 0 9 1579 183 80 0 0 chr4 130348494 130348519 -25281601 + (CGAG)n Simple_repeat Simple_repeat 4 28 0 9 1579 22 0 0 0 chr4 130348590 130348612 -25281508 + GC_rich Low_complexity Low_complexity 1 22 0 9 1579 26 0 0 27 chr4 130348648 130348665 -25281455 + GC_rich Low_complexity Low_complexity 1 17 0 9 1579 222 118 0 0 chr4 130348665 130348699 -25281421 + (CTG)n Simple_repeat Simple_repeat 1 34 0 9 1579 26 0 0 27 chr4 130348699 130348718 -25281402 + GC_rich Low_complexity Low_complexity 1 19 0 9 1579 321 26 0 0 chr4 130349691 130349729 -25280391 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 9 1579 1473 39 0 0 chr4 130349731 130349911 -25280209 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1579 216 339 13 47 chr4 130350009 130350141 -25279979 + MIR SINE MIR 24 153 -115 9 1579 242 294 0 14 chr4 130351001 130351070 -25279050 + MIR SINE MIR 78 145 -117 9 1579 616 214 56 0 chr4 130351130 130351256 -25278864 - ID_B1 SINE B4 -12 212 80 9 1579 313 280 32 14 chr4 130352007 130352172 -25277948 - MIRm SINE MIR -90 178 22 9 1579 181 293 96 12 chr4 130352140 130352223 -25277897 + MIR SINE MIR 45 134 -74 9 1579 736 188 23 0 chr4 130352268 130352396 -25277724 - B1_Mus1 SINE Alu -13 135 5 9 1579 374 252 0 124 chr4 130352411 130352524 -25277596 - PB1D10 SINE Alu -7 110 12 9 1579 336 274 36 65 chr4 130352747 130352766 -25277354 + B4A SINE B4 81 156 -136 9 1579 603 172 77 15 chr4 130352766 130352896 -25277224 + B1_Mus2 SINE Alu 9 146 -1 9 1579 336 274 36 65 chr4 130352896 130352915 -25277205 + B4A SINE B4 157 243 -49 9 1579 209 311 38 19 chr4 130354144 130354249 -25275871 + MIR SINE MIR 20 126 -136 9 1579 546 264 27 7 chr4 130357078 130357227 -25272893 - MIR SINE MIR -83 179 28 9 1579 222 178 22 0 chr4 130357831 130357876 -25272244 + L2c LINE L2 3098 3143 -244 9 1579 306 0 0 0 chr4 130358333 130358367 -25271753 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1579 240 23 43 43 chr4 130358489 130358535 -25271585 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 9 1579 435 284 161 42 chr4 130359142 130359403 -25270717 + B4A SINE B4 1 292 0 9 1579 285 109 0 0 chr4 130360566 130360612 -25269508 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 9 1579 570 298 161 12 chr4 130361783 130362038 -25268082 + Tigger7 DNA MER2_type 56 348 -2143 9 1579 260 53 26 0 chr4 130362228 130362266 -25267854 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 9 1579 455 208 19 38 chr4 130362266 130362371 -25267749 - ID_B1 SINE B4 -19 205 103 9 1579 1085 88 0 6 chr4 130362437 130362597 -25267523 - B2_Mm2 SINE B2 -8 187 29 9 1579 1070 56 7 0 chr4 130362622 130362764 -25267356 - B1_Mus2 SINE Alu 0 147 5 9 1579 243 346 0 0 chr4 130363058 130363136 -25266984 - Tigger7 DNA MER2_type -2180 311 234 9 1579 623 214 0 8 chr4 130363269 130363396 -25266724 - RSINE1 SINE B4 -39 126 1 9 1579 2370 70 137 0 chr4 130363592 130363935 -25266185 - RLTR10 LTR ERVK 0 390 1 9 1579 237 326 53 53 chr4 130364287 130364439 -25265681 - MIRb SINE MIR -92 176 25 9 1579 191 296 45 50 chr4 130364744 130364850 -25265270 + MIRc SINE MIR 16 135 -133 9 1579 23 0 0 0 chr4 130366086 130366109 -25264011 + AT_rich Low_complexity Low_complexity 1 23 0 9 1579 777 73 0 0 chr4 130366322 130366431 -25263689 + (GGA)n Simple_repeat Simple_repeat 1 109 0 9 1579 235 117 18 88 chr4 130366667 130366780 -25263340 + G-rich Low_complexity Low_complexity 5 109 0 9 1579 224 259 0 0 chr4 130366810 130366868 -25263252 + (GGGTG)n Simple_repeat Simple_repeat 4 61 0 9 1579 433 315 98 19 chr4 130367221 130367416 -25262704 - MIRb SINE MIR -58 210 1 9 1579 201 127 15 154 chr4 130367615 130367680 -25262440 + MIR SINE MIR 81 136 -126 9 1579 180 222 44 0 chr4 130367823 130367868 -25262252 - MIR3 SINE MIR -43 165 119 9 1579 195 42 0 0 chr4 130368157 130368181 -25261939 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 9 1579 21 0 0 0 chr4 130368329 130368350 -25261770 + GC_rich Low_complexity Low_complexity 1 21 0 9 1579 264 59 0 0 chr4 130368681 130368715 -25261405 + (TGG)n Simple_repeat Simple_repeat 2 35 0 9 1579 529 204 0 13 chr4 130369187 130369336 -25260784 + (TG)n Simple_repeat Simple_repeat 2 148 0 9 1579 207 300 10 20 chr4 130369927 130370029 -25260091 + CT-rich Low_complexity Low_complexity 2 102 0 9 1579 1067 122 0 0 chr4 130370427 130370575 -25259545 - B1_Mus1 SINE Alu 0 148 1 9 1579 300 53 0 0 chr4 130370935 130370973 -25259147 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1579 188 287 114 11 chr4 130372242 130372330 -25257790 + MIRc SINE MIR 119 215 -53 9 1579 823 104 0 69 chr4 130373751 130373895 -25256225 + B1_Mus2 SINE Alu 13 146 -1 9 1579 226 217 0 0 chr4 130374715 130374761 -25255359 + (CCA)n Simple_repeat Simple_repeat 3 48 0 9 1579 811 200 57 0 chr4 130375393 130375533 -25254587 + B1_Mur3 SINE Alu 1 148 -1 9 1579 268 295 20 31 chr4 130375662 130375760 -25254360 + ID_B1 SINE B4 80 176 -48 9 1579 445 239 34 11 chr4 130375678 130375794 -25254326 + PB1D7 SINE Alu 17 130 -20 1 1579 694 225 7 0 chr4 130376294 130376432 -25253688 + ID_B1 SINE B4 80 218 -6 1 1579 226 380 19 45 chr4 130376322 130376479 -25253641 - YREP_Mm Unknown Unknown -1523 289 137 1 1579 530 291 44 9 chr4 130377034 130377228 -25252892 + MIRc SINE MIR 2 199 -77 1 1579 225 0 0 0 chr4 130378130 130378155 -25251965 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 1 1579 2221 74 7 3 chr4 130378216 130378502 -25251618 - L1_Mus1 LINE L1 0 6567 6281 1 1579 3295 58 2 2 chr4 130382420 130382820 -25247300 - MTB LTR MaLR 0 400 1 1 1579 1018 116 20 0 chr4 130382985 130383132 -25246988 - B1_Mur4 SINE Alu 0 150 1 1 1579 527 335 52 52 chr4 130383767 130384016 -25246104 + B4 SINE B4 1 249 -43 1 1579 279 93 0 0 chr4 130384053 130384096 -25246024 + (CTCA)n Simple_repeat Simple_repeat 4 46 0 1 1579 194 299 15 0 chr4 130384372 130384439 -25245681 + MIRc SINE MIR 83 150 -118 1 1579 201 147 0 0 chr4 130384641 130384675 -25245445 + (ATG)n Simple_repeat Simple_repeat 2 35 0 1 1579 318 289 0 0 chr4 130384680 130384756 -25245364 - B1F SINE Alu -49 100 25 1 1579 275 244 5 57 chr4 130385678 130385781 -25244339 + B4 SINE B4 92 278 -14 1 1579 454 260 29 0 chr4 130385809 130385913 -25244207 - PB1 SINE Alu -7 120 14 1 1579 335 252 43 71 chr4 130385914 130386055 -25244065 + L1MC5 LINE L1 7496 7632 -329 1 1579 776 200 117 5 chr4 130386077 130386273 -25243847 - ID_B1 SINE B4 -6 218 1 1 1579 1142 81 0 26 chr4 130386300 130386452 -25243668 + B1_Mus1 SINE Alu 1 148 0 1 1579 214 262 0 0 chr4 130386480 130386522 -25243598 + polypyrimidine Low_complexity Low_complexity 3 44 0 1 1579 321 252 0 0 chr4 130386539 130386642 -25243478 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 1579 299 260 27 14 chr4 130386648 130386722 -25243398 - B4A SINE B4 -6 286 212 1 1579 656 298 0 12 chr4 130386752 130386915 -25243205 - RSINE1 SINE B4 0 165 5 1 1579 394 168 13 40 chr4 130386945 130387094 -25243026 + (TATG)n Simple_repeat Simple_repeat 3 147 0 1 1579 275 178 29 10 chr4 130387119 130387221 -25242899 + (TATG)n Simple_repeat Simple_repeat 4 107 0 1 1579 751 264 55 45 chr4 130387250 130387452 -25242668 - B4A SINE B4 -86 206 3 1 1579 387 0 0 0 chr4 130387472 130387515 -25242605 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1579 266 243 171 0 chr4 130387515 130387585 -25242535 - ID SINE ID -141 83 2 1 1579 273 227 309 0 chr4 130388314 130388424 -25241696 - B1F1 SINE Alu 0 149 6 1 1579 1011 105 42 0 chr4 130388438 130388581 -25241539 - B1_Mur4 SINE Alu -1 149 1 1 1579 539 248 0 9 chr4 130388590 130388700 -25241420 - PB1D10 SINE Alu -8 109 1 1 1579 474 170 0 0 chr4 130389233 130389327 -25240793 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1579 277 224 341 0 chr4 130389501 130389586 -25240534 - PB1D7 SINE Alu -5 115 2 1 1579 328 269 13 0 chr4 130389620 130389698 -25240422 + ID_B1 SINE B4 78 156 -68 1 1579 195 100 0 0 chr4 130390231 130390261 -25239859 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 1 1579 807 297 14 14 chr4 130390449 130390671 -25239449 + ID_B1 SINE B4 2 223 -1 1 1579 285 135 0 0 chr4 130390672 130390724 -25239396 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 1 1579 280 259 0 80 chr4 130390733 130390781 -25239339 + ID4_ SINE ID 2 45 -38 1 1579 1067 146 54 0 chr4 130390781 130390966 -25239154 + B2_Mm2 SINE B2 1 195 0 1 1579 280 259 0 80 chr4 130390966 130391005 -25239115 + ID4_ SINE ID 46 82 -1 1 1579 214 282 0 76 chr4 130391126 130391218 -25238902 - MIR SINE MIR -77 131 47 1 1579 185 313 45 0 chr4 130391475 130391542 -25238578 + MIRc SINE MIR 104 173 -95 1 1579 232 167 24 0 chr4 130391756 130391798 -25238322 - MTC LTR MaLR -8 413 371 1 1579 234 176 0 0 chr4 130391798 130391849 -25238271 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 1 1579 2028 136 39 17 chr4 130391849 130392208 -25237912 - MTC LTR MaLR -31 390 24 1 1579 475 273 45 0 chr4 130392772 130392882 -25237238 - RSINE1 SINE B4 -29 136 22 1 1579 555 16 0 0 chr4 130392912 130392976 -25237144 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1579 211 203 68 68 chr4 130394445 130394519 -25235601 - PB1D7 SINE Alu 0 120 47 1 1579 213 291 8 33 chr4 130394534 130394655 -25235465 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 1579 399 255 57 0 chr4 130395435 130395541 -25234579 - B1F1 SINE Alu -37 112 1 1 1579 301 268 105 18 chr4 130395442 130395556 -25234564 - B4A SINE B4 -98 194 71 1 1579 262 286 93 44 chr4 130395995 130396178 -25233942 + MLT1C LTR MaLR 1 192 -275 1 1579 261 374 18 6 chr4 130396228 130396392 -25233728 + MLT1C LTR MaLR 294 459 -8 1 1579 233 379 32 16 chr4 130396401 130396527 -25233593 - MIR SINE MIR -120 142 15 1 1579 182 161 0 0 chr4 130396861 130396892 -25233228 + MIRc SINE MIR 122 152 -116 1 1579 241 252 12 34 chr4 130397261 130397370 -25232750 - MIR SINE MIR -56 152 54 1 1579 523 74 12 12 chr4 130397903 130397985 -25232135 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 1 1579 512 265 7 14 chr4 130397988 130398126 -25231994 - ID_B1 SINE B4 0 224 88 1 1579 304 319 120 30 chr4 130398813 130399046 -25231074 + LTR81A LTR ERV1? 33 286 -1064 1 1579 288 257 27 0 chr4 130399594 130399668 -25230452 - ID4_ SINE ID 0 83 8 1 1579 536 237 5 32 chr4 130399838 130400056 -25230064 + RMER17C LTR ERVK 63 274 -136 1 1579 240 111 0 0 chr4 130400057 130400093 -25230027 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1579 764 147 123 31 chr4 130400126 130400288 -25229832 + B2_Mm2 SINE B2 2 178 -17 1 1579 199 268 0 67 chr4 130400493 130400553 -25229567 - MIRm SINE MIR -135 141 86 1 1579 1084 55 20 27 chr4 130400560 130400575 -25229545 - B1_Mus1 SINE Alu 0 148 136 1 1579 198 0 0 0 chr4 130400575 130400597 -25229523 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1579 1084 55 20 27 chr4 130400597 130400730 -25229390 - B1_Mus1 SINE Alu -13 135 1 1 1579 1486 44 60 0 chr4 130401718 130401901 -25228219 + B2_Mm2 SINE B2 2 195 0 1 1579 403 220 79 44 chr4 130402778 130402892 -25227228 + PB1D7 SINE Alu 3 120 0 1 1579 414 108 0 0 chr4 130403442 130403507 -25226613 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1579 194 156 0 22 chr4 130403580 130403626 -25226494 + CT-rich Low_complexity Low_complexity 2 46 0 1 1579 322 309 22 18 chr4 130403626 130403863 -25226257 + CT-rich Low_complexity Low_complexity 1 237 0 1 1579 905 162 6 0 chr4 130403880 130404053 -25226067 + (TCCA)n Simple_repeat Simple_repeat 4 177 0 1 1579 258 136 0 0 chr4 130404142 130404186 -25225934 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1 1579 582 330 106 36 chr4 130404246 130404576 -25225544 - MLT1L LTR MaLR -239 371 19 1 1579 252 204 19 0 chr4 130404664 130404718 -25225402 - L2b LINE L2 -1 3374 3320 1 1579 203 300 0 0 chr4 130404876 130404926 -25225194 - L2a LINE L2 0 3426 3377 1 1579 188 265 20 0 chr4 130404894 130404943 -25225177 - MIRb SINE MIR -14 254 205 1 1579 261 353 0 0 chr4 130405867 130406391 -25223729 + (CAGC)n Simple_repeat Simple_repeat 1 524 0 1 1579 196 221 0 25 chr4 130406688 130406767 -25223353 + CT-rich Low_complexity Low_complexity 6 82 0 1 1579 285 247 39 0 chr4 130406784 130406861 -25223259 - ID4_ SINE ID 0 83 4 1 1579 230 284 112 11 chr4 130406869 130406958 -25223162 - ZP3AR Satellite Satellite -77 135 38 1 1579 596 234 20 40 chr4 130406958 130407109 -25223011 - B1F SINE Alu 0 149 2 1 1579 848 263 27 4 chr4 130407831 130407891 -25222229 + ID_B1 SINE B4 21 176 -116 1 1579 366 284 0 108 chr4 130407891 130408021 -25222099 + PB1D10 SINE Alu 1 116 -1 1 1579 848 263 27 4 chr4 130408021 130408050 -25222070 + ID_B1 SINE B4 177 257 -35 1 1579 329 330 27 9 chr4 130408158 130408268 -25221852 - PB1D10 SINE Alu -1 116 5 1 1579 222 37 0 0 chr4 130408284 130408311 -25221809 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1579 730 101 32 48 chr4 130408313 130408328 -25221792 - B1_Mm SINE Alu -6 141 127 1 1579 3569 23 2 0 chr4 130408328 130408723 -25221397 - MTA_Mm LTR MaLR 0 396 1 1 1579 730 101 32 48 chr4 130408723 130408832 -25221288 - B1_Mm SINE Alu -21 126 19 1 1579 217 190 0 94 chr4 130409461 130409525 -25220595 - PB1D7 SINE Alu 0 120 63 1 1579 1118 36 65 0 chr4 130409573 130409711 -25220409 + B1_Mus1 SINE Alu 1 147 -1 1 1579 229 89 53 18 chr4 130409730 130409787 -25220333 + A-rich Low_complexity Low_complexity 2 60 0 1 1579 730 236 88 5 chr4 130409858 130410050 -25220070 + ID_B1 SINE B4 16 223 -1 1 1579 322 296 56 8 chr4 130410080 130410206 -25219914 + B1F SINE Alu 13 144 -5 1 1579 382 244 0 24 chr4 130410217 130410301 -25219819 + ID4_ SINE ID 2 83 0 1 1579 195 42 0 0 chr4 130410681 130410705 -25219415 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1579 226 396 18 18 chr4 130411142 130411170 -25218950 + ID_B1 SINE B4 54 166 -58 1 1579 285 289 12 24 chr4 130411170 130411255 -25218865 + PB1D10 SINE Alu 2 85 -32 1 1579 780 160 27 17 chr4 130411243 130411403 -25218717 + B2_Mm2 SINE B2 50 214 -2 1 1579 374 180 23 38 chr4 130411406 130411539 -25218581 + (TATG)n Simple_repeat Simple_repeat 2 132 0 1 1579 701 239 0 6 chr4 130411822 130411978 -25218142 + ID_B1 SINE B4 2 156 -68 1 1579 686 234 114 0 chr4 130411979 130412146 -25217974 + B3A SINE B2 2 187 -11 1 1579 251 135 58 0 chr4 130412148 130412200 -25217920 + CT-rich Low_complexity Low_complexity 5 59 0 1 1579 3487 196 79 122 chr4 130412214 130413280 -25216840 - RMER1B Other Other -2 1064 45 1 1579 307 242 0 0 chr4 130414653 130414719 -25215401 + RMER15 LTR ERVL 404 469 -106 1 1579 324 0 0 0 chr4 130415028 130415064 -25215056 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1579 402 333 7 14 chr4 130415480 130415623 -25214497 - LTR33B LTR ERVL -292 211 70 1 1579 453 19 0 0 chr4 130416254 130416308 -25213812 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1579 442 191 14 0 chr4 130416308 130416449 -25213671 + GA-rich Low_complexity Low_complexity 2 144 0 1 1580 586 276 0 0 chr4 130419319 130419442 -25210678 + RSINE1 SINE B4 30 152 -13 1 1580 871 232 11 26 chr4 130419493 130419683 -25210437 - ID_B1 SINE B4 -26 198 12 1 1580 1197 213 150 26 chr4 130419698 130420061 -25210059 + MTD LTR MaLR 1 377 -42 1 1580 396 0 0 0 chr4 130420696 130420740 -25209380 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1580 989 204 63 0 chr4 130421020 130421211 -25208909 - ID_B1 SINE B4 -21 203 1 1 1580 287 339 24 16 chr4 130421214 130421340 -25208780 - MIRb SINE MIR -76 192 66 1 1580 229 240 165 29 chr4 130421348 130421451 -25208669 - MIR3 SINE MIR -89 119 3 1 1580 232 224 0 0 chr4 130421737 130421786 -25208334 + C-rich Low_complexity Low_complexity 1 49 0 1 1580 386 259 172 41 chr4 130422363 130422392 -25207728 - B4A SINE B4 -51 241 127 1 1580 578 217 0 0 chr4 130422392 130422498 -25207622 - PB1D10 SINE Alu -9 108 3 1 1580 558 261 14 40 chr4 130422711 130422859 -25207261 - RSINE1 SINE B4 -10 155 12 1 1580 552 295 42 10 chr4 130423129 130423321 -25206799 - L1MA6 LINE L1 -5 6295 6098 1 1580 199 306 111 25 chr4 130423348 130423546 -25206574 - L2b LINE L2 -224 3151 2937 1 1580 250 0 232 0 chr4 130423647 130423742 -25206378 + (CAGGC)n Simple_repeat Simple_repeat 3 119 0 1 1580 314 248 41 16 chr4 130423898 130424021 -25206099 + GA-rich Low_complexity Low_complexity 1 126 0 1 1580 790 212 179 0 chr4 130424818 130424997 -25205123 + B3 SINE B2 2 212 -4 1 1580 243 313 9 108 chr4 130425108 130425152 -25204968 + RMER4B LTR ERVK 458 497 -88 1 1580 387 0 0 0 chr4 130425152 130425195 -25204925 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1580 243 313 9 108 chr4 130425195 130425261 -25204859 + RMER4B LTR ERVK 498 557 -28 1 1580 300 53 0 0 chr4 130425261 130425299 -25204821 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1 1580 489 273 75 62 chr4 130425409 130425523 -25204597 + RSINE1 SINE B4 4 127 -38 1 1580 2817 109 18 29 chr4 130425523 130425969 -25204151 - BGLII_B LTR ERVK 0 441 1 1 1580 489 273 75 62 chr4 130425969 130426014 -25204106 + RSINE1 SINE B4 128 165 0 1 1580 440 200 11 49 chr4 130426023 130426207 -25203913 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 1580 218 309 0 13 chr4 130426289 130426443 -25203677 + (CATA)n Simple_repeat Simple_repeat 3 154 0 1 1580 349 265 51 56 chr4 130426489 130426685 -25203435 + L1M5 LINE L1 5548 5742 -382 1 1580 228 111 0 0 chr4 130426866 130426902 -25203218 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1580 360 0 0 0 chr4 130426980 130427020 -25203100 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1580 447 268 15 30 chr4 130427034 130427165 -25202955 - RSINE1 SINE B4 -34 131 3 1 1580 873 114 259 24 chr4 130427655 130427797 -25202323 + B3 SINE B2 1 184 -32 1 1580 579 15 0 0 chr4 130427797 130427865 -25202255 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1580 873 114 259 24 chr4 130427865 130427892 -25202228 + B3 SINE B2 185 210 -6 1 1580 204 40 0 0 chr4 130428860 130428885 -25201235 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1580 981 174 33 43 chr4 130429462 130429672 -25200448 - B3 SINE B2 -7 209 2 1 1580 489 259 65 22 chr4 130429675 130429813 -25200307 - ID_B1 SINE B4 0 224 81 1 1580 329 333 34 0 chr4 130429820 130429937 -25200183 - ID_B1 SINE B4 -49 175 55 1 1580 282 233 55 8 chr4 130430009 130430140 -25199980 - MIRm SINE MIR -94 182 40 1 1580 208 267 171 90 chr4 130430136 130430247 -25199873 + L2b LINE L2 3035 3154 -221 1 1580 216 324 39 10 chr4 130430505 130430608 -25199512 + MIR SINE MIR 103 208 -54 1 1580 197 344 104 22 chr4 130431224 130431358 -25198762 + MIRb SINE MIR 58 202 -66 1 1580 664 69 61 20 chr4 130431387 130431430 -25198690 + polypurine Low_complexity Low_complexity 5 50 0 1 1580 1169 34 11 28 chr4 130431430 130431610 -25198510 + (GGAGA)n Simple_repeat Simple_repeat 3 179 0 1 1580 664 69 61 20 chr4 130431610 130431713 -25198407 + polypurine Low_complexity Low_complexity 51 156 0 1 1580 627 224 7 50 chr4 130431723 130431864 -25198256 - RSINE1 SINE B4 -28 137 3 1 1580 183 205 26 0 chr4 130433066 130433105 -25197015 - MIRc SINE MIR -109 159 120 1 1580 754 135 23 0 chr4 130433356 130433489 -25196631 - URR1B DNA MER1_type -2 223 88 1 1580 216 282 42 14 chr4 130433522 130433594 -25196526 + MIRb SINE MIR 55 128 -140 1 1580 276 102 0 0 chr4 130433637 130433686 -25196434 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1580 360 0 0 0 chr4 130433689 130433729 -25196391 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1580 402 252 18 26 chr4 130434080 130434194 -25195926 + PB1D10 SINE Alu 3 115 -2 1 1580 278 152 0 17 chr4 130435054 130435114 -25195006 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1580 262 286 49 39 chr4 130435978 130436080 -25194040 + L2a LINE L2 3311 3413 -13 1 1580 205 85 0 78 chr4 130436217 130436268 -25193852 + G-rich Low_complexity Low_complexity 2 48 0 1 1580 239 318 28 103 chr4 130436642 130436856 -25193264 + MT2B2 LTR ERVL 66 263 -321 1 1580 641 260 14 0 chr4 130436739 130436885 -25193235 + ID_B1 SINE B4 69 216 -8 1 1580 311 177 0 37 chr4 130436892 130436927 -25193193 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1580 537 16 0 0 chr4 130436927 130436989 -25193131 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 1 1580 311 177 0 37 chr4 130436989 130437035 -25193085 + (CCAA)n Simple_repeat Simple_repeat 4 48 0 1 1580 1026 144 0 0 chr4 130437035 130437215 -25192905 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 1 1580 644 263 27 50 chr4 130437309 130437529 -25192591 - MER102b DNA MER1_type -118 223 9 1 1580 301 344 39 13 chr4 130437680 130437836 -25192284 - MIRb SINE MIR -102 166 7 1 1580 699 215 106 11 chr4 130437958 130438137 -25191983 - B3A SINE B2 0 198 3 1 1580 298 270 202 26 chr4 130439075 130439189 -25190931 - MIRb SINE MIR -123 153 20 1 1580 203 277 0 122 chr4 130439538 130439612 -25190508 + MIRc SINE MIR 87 155 -113 1 1580 270 286 69 30 chr4 130439697 130439798 -25190322 - MIR SINE MIR -69 193 89 1 1580 210 233 16 32 chr4 130440083 130440145 -25189975 + MIRc SINE MIR 16 76 -192 1 1580 25 0 0 0 chr4 130440576 130440601 -25189519 + AT_rich Low_complexity Low_complexity 1 25 0 1 1580 852 307 39 8 chr4 130440895 130441151 -25188969 + B4 SINE B4 22 285 -7 1 1580 288 0 0 0 chr4 130441338 130441370 -25188750 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1580 1281 14 0 0 chr4 130441372 130441513 -25188607 - B1_Mm SINE Alu -6 141 1 1 1580 198 0 0 0 chr4 130441517 130441539 -25188581 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1580 453 292 18 0 chr4 130441541 130441654 -25188466 - PB1D10 SINE Alu -2 115 1 1 1580 222 406 29 22 chr4 130441759 130441895 -25188225 + L3 LINE CR1 4227 4363 -126 1 1580 948 154 0 20 chr4 130441981 130442127 -25187993 + B1_Mur4 SINE Alu 2 144 -6 1 1580 244 0 0 53 chr4 130442133 130442171 -25187949 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1580 2720 59 3 0 chr4 130442825 130443147 -25186973 + ORR1A2 LTR MaLR 3 325 -2 1 1580 206 151 0 36 chr4 130443836 130443891 -25186229 + A-rich Low_complexity Low_complexity 2 54 0 1 1580 656 252 84 33 chr4 130444295 130444508 -25185612 + ID_B1 SINE B4 1 224 0 1 1580 250 26 0 49 chr4 130444694 130444735 -25185385 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1 1580 1359 11 35 0 chr4 130444876 130445050 -25185070 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1580 405 0 0 0 chr4 130445050 130445095 -25185025 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1580 1561 27 49 0 chr4 130445239 130445422 -25184698 + B2_Mm1t SINE B2 2 193 0 1 1580 217 250 33 0 chr4 130446101 130446161 -25183959 + (CGTG)n Simple_repeat Simple_repeat 4 65 0 1 1580 786 186 11 0 chr4 130446807 130447083 -25183037 + (TG)n Simple_repeat Simple_repeat 1 279 0 1 1580 255 152 0 0 chr4 130447099 130447145 -25182975 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1580 1147 242 92 49 chr4 130448614 130448961 -25181159 + MTE2a LTR MaLR 18 379 0 1 1580 885 149 6 57 chr4 130448983 130449140 -25180980 + B1_Mur3 SINE Alu 1 149 0 1 1580 356 222 25 0 chr4 130449278 130449359 -25180761 - ID_B1 SINE B4 -9 215 133 1 1580 216 250 43 54 chr4 130449359 130449371 -25180749 - PB1 SINE Alu -8 119 28 1 1580 1550 194 111 8 chr4 130449434 130449803 -25180317 - MTD LTR MaLR 0 419 13 1 1580 279 277 200 13 chr4 130450173 130450323 -25179797 - L1MB4 LINE L1 -193 5990 5813 1 1580 333 0 0 0 chr4 130450324 130450361 -25179759 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1580 39 50 0 0 chr4 130450464 130450524 -25179596 + AT_rich Low_complexity Low_complexity 1 60 0 1 1580 897 26 0 0 chr4 130450525 130450640 -25179480 - B1_Mus1 SINE Alu 0 148 34 1 1580 1104 67 60 24 chr4 130450639 130450807 -25179313 - B2_Mm2 SINE B2 -20 175 2 1 1580 1342 239 32 55 chr4 130450811 130451286 -25178834 - Lx9 LINE L1 -17 7627 7081 1 1580 268 286 14 0 chr4 130451396 130451466 -25178654 - B4A SINE B4 -60 232 162 1 1580 490 247 213 7 chr4 130451466 130451621 -25178499 - B4A SINE B4 -99 193 7 1 1580 554 303 91 75 chr4 130451625 130452107 -25178013 - L1MB4 LINE L1 -354 5826 5337 1 1580 698 211 0 44 chr4 130452125 130452308 -25177812 + HAL1-2a_MD LINE L1 2345 2519 -505 1 1580 524 146 0 26 chr4 130452310 130452423 -25177697 + (CACCAT)n Simple_repeat Simple_repeat 4 113 0 1 1580 219 36 0 0 chr4 130452628 130452656 -25177464 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1580 315 283 41 52 chr4 130452662 130452673 -25177447 - B1F1 SINE Alu -16 133 38 1 1580 473 198 12 0 chr4 130452673 130452759 -25177361 - ID_B1 SINE B4 -19 205 119 1 1580 229 231 0 93 chr4 130452759 130452888 -25177232 + CT-rich Low_complexity Low_complexity 3 119 0 1 1580 233 298 89 16 chr4 130453940 130454063 -25176057 + MIRb SINE MIR 46 177 -91 1 1580 594 159 0 0 chr4 130454265 130454391 -25175729 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1580 1229 54 0 0 chr4 130455171 130455318 -25174802 + B1_Mus1 SINE Alu 2 148 0 1 1580 210 105 0 0 chr4 130455318 130455356 -25174764 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1580 322 253 0 27 chr4 130456299 130456395 -25173725 - ID4 SINE ID -54 98 9 1 1580 33 0 0 0 chr4 130456404 130456437 -25173683 + AT_rich Low_complexity Low_complexity 1 33 0 1 1580 342 0 0 0 chr4 130456454 130456492 -25173628 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1580 276 324 6 55 chr4 130456492 130456606 -25173514 - RSINE1 SINE B4 -53 112 1 1 1580 226 356 87 0 chr4 130456606 130456721 -25173399 - PB1 SINE Alu -2 125 1 1 1580 337 268 104 26 chr4 130456908 130457023 -25173097 + ID_B1 SINE B4 93 216 -8 1 1580 861 191 0 0 chr4 130457129 130457276 -25172844 + B1_Mur2 SINE Alu 2 148 -1 1 1580 519 17 0 0 chr4 130457646 130457706 -25172414 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 1 1580 441 0 0 0 chr4 130458516 130458565 -25171555 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1580 424 200 0 32 chr4 130458918 130459104 -25171016 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1580 225 94 0 0 chr4 130459513 130459545 -25170575 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1580 537 295 14 7 chr4 130459567 130459707 -25170413 - RSINE1 SINE B4 -16 149 9 1 1580 541 235 158 29 chr4 130459698 130459869 -25170251 - MTD LTR MaLR -222 197 5 1 1580 342 258 5 16 chr4 130459915 130460029 -25170091 - B1F SINE Alu -5 144 1 1 1580 365 291 58 33 chr4 130461046 130461232 -25168888 - MIRc SINE MIR -51 217 24 1 1580 236 208 94 0 chr4 130461463 130461516 -25168604 + L2b LINE L2 3297 3354 -21 1 1580 252 287 25 0 chr4 130462570 130462677 -25167443 - MIR SINE MIR -66 142 28 1 1580 683 258 27 75 chr4 130462727 130463065 -25167055 - MTEa LTR MaLR 0 379 5 1 1580 629 212 23 0 chr4 130463116 130463248 -25166872 - RSINE1 SINE B4 -28 137 3 1 1580 296 329 57 38 chr4 130463313 130463471 -25166649 - MLT1J LTR MaLR -74 438 278 1 1580 462 178 0 0 chr4 130463813 130463903 -25166217 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1580 678 223 0 0 chr4 130463945 130464201 -25165919 + (TG)n Simple_repeat Simple_repeat 1 256 0 1 1580 272 192 0 0 chr4 130465577 130465629 -25164491 - B1F SINE Alu -5 144 93 1 1580 330 326 41 7 chr4 130466111 130466256 -25163864 - MLT1D LTR MaLR -150 355 206 1 1580 282 29 0 0 chr4 130466598 130466633 -25163487 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1580 265 315 30 66 chr4 130466921 130467118 -25163002 - MER113A DNA MER1_type -81 233 44 1 1580 387 0 0 0 chr4 130467457 130467500 -25162620 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1580 467 249 10 61 chr4 130467500 130467709 -25162411 - B4A SINE B4 -23 269 5 1 1580 1443 164 0 22 chr4 130468225 130468455 -25161665 - URR1A DNA MER1_type 0 226 2 1 1580 383 262 44 37 chr4 130468455 130468590 -25161530 + MIR SINE MIR 30 165 -97 1 1580 866 184 0 0 chr4 130468590 130468726 -25161394 + B1_Mur4 SINE Alu 3 138 -12 1 1580 459 52 0 0 chr4 130468739 130468797 -25161323 + (CAAAC)n Simple_repeat Simple_repeat 1 58 0 1 1580 402 21 0 0 chr4 130469377 130469424 -25160696 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1580 191 282 56 45 chr4 130469457 130469546 -25160574 + MIRc SINE MIR 71 160 -108 1 1580 183 211 34 34 chr4 130470030 130470089 -25160031 - L3b LINE CR1 -182 300 242 1 1580 222 331 71 50 chr4 130470215 130470355 -25159765 + MIRb SINE MIR 80 222 -40 1 1580 1067 140 159 40 chr4 130470410 130470611 -25159509 - URR1B DNA MER1_type 0 225 1 1 1580 195 273 93 80 chr4 130470733 130470884 -25159236 + MIRm SINE MIR 17 169 -39 1 1580 448 233 29 0 chr4 130472325 130472428 -25157692 - PB1D10 SINE Alu 0 117 12 1 1580 343 274 19 0 chr4 130472542 130472648 -25157472 - PB1D10 SINE Alu -8 109 2 1 1580 247 208 53 53 chr4 130472659 130472735 -25157385 - L1MC3 LINE L1 -1 7784 7709 1 1580 260 333 29 15 chr4 130474300 130474444 -25155676 - MIR3 SINE MIR -80 182 37 1 1580 251 343 33 53 chr4 130474545 130474696 -25155424 + MIRb SINE MIR 119 266 -2 1 1580 736 278 92 69 chr4 130474785 130475133 -25154987 - RMER5 LTR ERV1 -130 404 49 1 1580 21 0 0 0 chr4 130475181 130475202 -25154918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1580 294 360 14 7 chr4 130476490 130476630 -25153490 - MIR SINE MIR -41 221 81 1 1580 363 136 0 47 chr4 130476702 130476787 -25153333 + CT-rich Low_complexity Low_complexity 4 84 0 1 1580 343 276 124 0 chr4 130476802 130476907 -25153213 - ID_B1 SINE B4 -23 201 84 1 1580 471 264 11 40 chr4 130477689 130477863 -25152257 - B3 SINE B2 0 216 48 1 1580 3020 65 36 3 chr4 130478972 130479359 -25150761 + MTB LTR MaLR 1 400 0 1 1580 246 257 26 26 chr4 130479359 130479425 -25150695 + MIRc SINE MIR 85 152 -116 1 1580 479 322 101 0 chr4 130479843 130480042 -25150078 - ID_B1 SINE B4 0 224 6 1 1580 225 0 0 0 chr4 130480485 130480510 -25149610 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 1 1580 257 247 157 0 chr4 130480688 130480777 -25149343 - MIRm SINE MIR -87 189 87 1 1580 210 71 0 0 chr4 130481313 130481341 -25148779 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 1580 377 262 19 0 chr4 130481793 130481900 -25148220 - MIR SINE MIR -96 166 58 1 1580 884 238 39 5 chr4 130484103 130484306 -25145814 + ID_B1 SINE B4 15 224 0 1 1580 315 285 101 3 chr4 130485686 130485815 -25144305 - MLT1F1 LTR MaLR -3 546 412 1 1580 373 272 35 0 chr4 130485886 130486000 -25144120 - MLT1F1 LTR MaLR -283 286 169 1 1580 436 228 12 0 chr4 130486121 130486227 -25143893 + B1F SINE Alu 1 114 -6 1 1580 242 267 0 10 chr4 130486468 130486570 -25143550 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1580 549 0 0 0 chr4 130486572 130486633 -25143487 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1580 733 172 7 7 chr4 130487110 130487237 -25142883 - ID_B1 SINE B4 -53 239 109 1 1580 280 331 37 37 chr4 130487130 130487265 -25142855 + YREP_Mm Unknown Unknown 186 320 -1492 1 1580 1592 121 53 0 chr4 130487254 130487518 -25142602 - ORR1A4 LTR MaLR -51 278 1 1 1580 248 313 59 25 chr4 130487568 130487686 -25142434 + L3 LINE CR1 4287 4408 -81 1 1580 242 282 47 0 chr4 130488026 130488111 -25142009 + MIRb SINE MIR 42 130 -138 1 1580 768 188 103 94 chr4 130488116 130488339 -25141781 - RMER1C Other Other 0 1342 1118 1 1580 266 253 34 6 chr4 130488381 130488556 -25141564 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1580 1207 21 46 3 chr4 130488567 130489446 -25140674 + (TCCA)n Simple_repeat Simple_repeat 1 916 0 1 1580 425 354 35 17 chr4 130489892 130490183 -25139937 - MLT1K LTR MaLR -169 426 97 1 1580 230 296 36 36 chr4 130492849 130492933 -25137187 + PB1D9 SINE Alu 35 118 -2 1 1580 295 274 13 3 chr4 130492951 130493027 -25137093 + ID4_ SINE ID 26 104 -48 1 1580 966 88 0 0 chr4 130493088 130493224 -25136896 - B1_Mus1 SINE Alu -1 147 12 1 1580 439 204 17 100 chr4 130493122 130493242 -25136878 - MT2B LTR ERVL -337 264 155 1 1580 196 279 57 28 chr4 130493245 130493349 -25136771 - MIRm SINE MIR -20 188 81 1 1580 546 242 16 8 chr4 130494820 130494941 -25135179 + RSINE1 SINE B4 3 124 -41 1 1580 207 0 0 0 chr4 130494942 130494965 -25135155 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1580 444 19 0 0 chr4 130494982 130495035 -25135085 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1580 288 0 0 0 chr4 130495392 130495424 -25134696 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1580 180 260 40 0 chr4 130495985 130496035 -25134085 + L3b LINE CR1 429 480 -2 1 1580 392 154 0 13 chr4 130496130 130496142 -25133978 + polypyrimidine Low_complexity Low_complexity 67 78 0 1 1580 1496 22 0 6 chr4 130496142 130496323 -25133797 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1580 392 154 0 13 chr4 130496323 130496344 -25133776 + polypyrimidine Low_complexity Low_complexity 46 66 0 1 1580 1371 62 0 0 chr4 130496344 130496522 -25133598 + (TCC)n Simple_repeat Simple_repeat 3 180 0 1 1580 392 154 0 13 chr4 130496522 130496566 -25133554 + polypyrimidine Low_complexity Low_complexity 2 45 0 1 1580 1436 82 5 0 chr4 130496566 130496750 -25133370 - B2_Mm1a SINE B2 -7 186 2 1 1580 288 268 266 14 chr4 130496912 130497056 -25133064 - MTE2b LTR MaLR -67 312 131 1 1580 1067 234 49 49 chr4 130497243 130497445 -25132675 + B4A SINE B4 4 208 -84 1 1580 1773 143 31 169 chr4 130497445 130497890 -25132230 - ORR1C2 LTR MaLR 0 384 1 1 1580 1067 234 49 49 chr4 130497890 130497975 -25132145 + B4A SINE B4 209 291 -1 1 1580 405 0 0 0 chr4 130497976 130498021 -25132099 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1580 396 0 0 0 chr4 130498021 130498064 -25132056 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1580 307 222 0 0 chr4 130498064 130498127 -25131993 + PB1D7 SINE Alu 51 113 -7 1 1580 513 0 0 0 chr4 130498135 130498192 -25131928 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1580 304 228 73 102 chr4 130499258 130499395 -25130725 + MIRc SINE MIR 62 194 -74 1 1580 242 239 30 0 chr4 130499626 130499693 -25130427 - MIR SINE MIR -58 150 82 1 1580 387 0 0 0 chr4 130499906 130499949 -25130171 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1580 201 39 0 0 chr4 130500377 130500403 -25129717 + (CTG)n Simple_repeat Simple_repeat 2 27 0 1 1580 189 325 26 13 chr4 130501123 130501201 -25128919 - MIRm SINE MIR -118 158 80 2 1580 207 238 15 73 chr4 130502307 130502375 -25127745 + MIRc SINE MIR 119 182 -86 3 1580 209 291 98 80 chr4 130502633 130502745 -25127375 - MIR SINE MIR -118 150 37 4 1580 3617 23 0 0 chr4 130503706 130504102 -25126018 - MTA_Mm LTR MaLR 0 396 1 5 1580 9812 20 0 0 chr4 130504102 130505200 -25124920 - MTA_Mm-int LTR MaLR 0 1098 1 5 1580 3571 23 0 0 chr4 130505200 130505590 -25124530 - MTA_Mm LTR MaLR -4 392 1 5 1580 360 0 0 0 chr4 130505684 130505724 -25124396 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1580 874 259 57 0 chr4 130509350 130509543 -25120577 + B3 SINE B2 2 205 -11 7 1580 218 160 0 20 chr4 130509585 130509636 -25120484 + GA-rich Low_complexity Low_complexity 4 53 0 8 1580 461 256 58 88 chr4 130509637 130509808 -25120312 + B4 SINE B4 125 290 -2 9 1580 657 193 0 0 chr4 130509814 130509959 -25120161 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1580 749 33 0 0 chr4 130513734 130513826 -25116294 - IAPLTR2a LTR ERVK -319 92 1 1 1580 423 98 0 0 chr4 130514508 130514569 -25115551 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1580 290 308 79 98 chr4 130514903 130515169 -25114951 - MLT1K LTR MaLR -328 267 7 1 1580 627 270 22 17 chr4 130515823 130516004 -25114116 + ID_B1 SINE B4 1 182 -42 1 1580 479 249 11 132 chr4 130517707 130517897 -25112223 + MER113A DNA MER1_type 37 203 -111 1 1580 372 305 106 10 chr4 130517962 130518161 -25111959 + MIRb SINE MIR 15 232 -36 1 1580 499 225 24 6 chr4 130518553 130518723 -25111397 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 1 1580 589 208 23 6 chr4 130518739 130518873 -25111247 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 1 1580 252 0 0 0 chr4 130518873 130518901 -25111219 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 1580 589 208 23 6 chr4 130518901 130518940 -25111180 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 1 1580 510 212 35 0 chr4 130519019 130519189 -25110931 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 2 1580 343 275 62 0 chr4 130519200 130519360 -25110760 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 2 1580 289 307 9 17 chr4 130519379 130519495 -25110625 + GA-rich Low_complexity Low_complexity 3 117 0 2 1580 297 290 157 25 chr4 130520069 130520267 -25109853 + MIRb SINE MIR 25 248 -20 2 1580 325 154 60 0 chr4 130520993 130521110 -25109010 + (TCCA)n Simple_repeat Simple_repeat 4 127 0 2 1580 247 218 29 19 chr4 130521669 130521772 -25108348 + CT-rich Low_complexity Low_complexity 4 107 0 2 1580 200 361 21 0 chr4 130522970 130523067 -25107053 - L2b LINE L2 -213 3162 3064 2 1580 200 350 35 63 chr4 130523128 130523302 -25106818 + L2 LINE L2 2423 2591 -828 2 1580 441 0 0 0 chr4 130523707 130523756 -25106364 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1580 717 165 0 0 chr4 130523756 130524048 -25106072 + GA-rich Low_complexity Low_complexity 1 292 0 2 1580 369 0 0 0 chr4 130524048 130524089 -25106031 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1580 717 156 0 0 chr4 130524089 130524131 -25105989 + polypurine Low_complexity Low_complexity 138 179 0 3 1580 469 297 149 29 chr4 130525180 130525581 -25104539 + L1MA4 LINE L1 5657 6095 -94 3 1580 794 304 49 12 chr4 130525628 130525874 -25104246 + B4 SINE B4 18 272 -20 3 1580 1149 143 0 8 chr4 130525939 130526298 -25103822 + (CCAA)n Simple_repeat Simple_repeat 1 356 0 3 1580 1191 122 0 0 chr4 130526310 130526674 -25103446 + (CCAA)n Simple_repeat Simple_repeat 1 364 0 3 1580 185 295 47 54 chr4 130526962 130527091 -25103029 + MIRb SINE MIR 10 137 -131 3 1580 24 0 0 0 chr4 130527109 130527133 -25102987 + AT_rich Low_complexity Low_complexity 1 24 0 3 1580 1285 172 30 0 chr4 130527327 130527530 -25102590 - B3 SINE B2 -6 210 2 3 1580 1032 268 43 83 chr4 130527652 130528047 -25102073 + MTE2b LTR MaLR 1 379 0 3 1580 366 244 0 0 chr4 130528775 130528853 -25101267 - ID4 SINE ID -4 79 2 3 1580 478 183 0 31 chr4 130528898 130528994 -25101126 + PB1D10 SINE Alu 16 108 -9 3 1580 276 30 0 0 chr4 130529062 130529095 -25101025 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1580 766 175 257 0 chr4 130529172 130529343 -25100777 - B4A SINE B4 -77 215 1 4 1580 371 209 35 11 chr4 130530161 130530248 -25099872 + B4A SINE B4 2 90 -202 4 1580 243 278 86 70 chr4 130530248 130530347 -25099773 + B3A SINE B2 2 190 -8 4 1580 413 246 6 0 chr4 130530356 130530527 -25099593 + (CA)n Simple_repeat Simple_repeat 2 173 0 4 1580 432 0 0 0 chr4 130530615 130530663 -25099457 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1580 357 236 0 0 chr4 130531096 130531168 -25098952 + ORR1E LTR MaLR 51 122 -237 4 1580 244 289 34 128 chr4 130531201 130531380 -25098740 + ORR1E LTR MaLR 201 362 -17 4 1580 207 232 0 0 chr4 130531908 130531964 -25098156 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1580 423 0 0 0 chr4 130532960 130533007 -25097113 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1580 422 270 94 8 chr4 130533550 130533722 -25096398 - MIRb SINE MIR -7 201 13 4 1580 391 276 34 42 chr4 130533993 130534140 -25095980 + L2a LINE L2 3256 3421 -5 5 1580 192 377 52 30 chr4 130534737 130534871 -25095249 + MIR SINE MIR 18 154 -114 5 1580 1113 272 26 120 chr4 130535788 130536206 -25093914 + MTE2a LTR MaLR 1 379 0 5 1580 475 225 17 0 chr4 130536353 130536526 -25093594 + (TTCA)n Simple_repeat Simple_repeat 4 179 0 5 1580 283 298 21 11 chr4 130536534 130536629 -25093491 + (CTCA)n Simple_repeat Simple_repeat 4 99 0 5 1580 212 239 273 0 chr4 130537974 130538062 -25092058 + MIRb SINE MIR 41 152 -116 5 1580 1931 172 97 36 chr4 130538338 130538537 -25091583 - ORR1C2 LTR MaLR -1 383 192 5 1580 351 0 0 0 chr4 130538537 130538576 -25091544 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1580 1931 172 97 36 chr4 130538576 130538737 -25091383 - ORR1C2 LTR MaLR -193 191 1 5 1580 853 220 73 6 chr4 130538747 130538925 -25091195 - ID_B1 SINE B4 -13 211 22 5 1580 333 331 48 0 chr4 130539346 130539470 -25090650 + MLT1C LTR MaLR 331 460 -7 5 1580 188 299 78 0 chr4 130540473 130540550 -25089570 - MIRb SINE MIR -121 147 65 6 1580 378 0 0 0 chr4 130541056 130541098 -25089022 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1580 21 0 0 0 chr4 130541976 130541997 -25088123 + GC_rich Low_complexity Low_complexity 1 21 0 6 1580 186 343 0 15 chr4 130542070 130542138 -25087982 - MIRc SINE MIR -168 100 34 6 1580 198 237 0 106 chr4 130542641 130542707 -25087413 + MIRb SINE MIR 107 165 -103 6 1580 1967 147 15 155 chr4 130544395 130544853 -25085267 + ORR1B1 LTR MaLR 1 394 0 6 1580 726 290 133 11 chr4 130545323 130545602 -25084518 + MER58D DNA MER1_type 42 354 -32 6 1580 221 299 146 23 chr4 130546161 130546291 -25083829 - MIRb SINE MIR -15 253 108 6 1580 1803 163 61 42 chr4 130546685 130547062 -25083058 + ORR1C2 LTR MaLR 1 384 0 6 1581 3437 46 2 0 chr4 130548049 130548444 -25081676 + MTA_Mm LTR MaLR 1 396 0 6 1581 8453 53 22 35 chr4 130548444 130549390 -25080730 + MTA_Mm-int LTR MaLR 1 956 -142 6 1581 1202 35 7 7 chr4 130549390 130549535 -25080585 + B1_Mus2 SINE Alu 2 146 -1 7 1581 8453 53 22 35 chr4 130549535 130549639 -25080481 + MTA_Mm-int LTR MaLR 957 1050 -48 6 1581 1375 52 0 11 chr4 130549639 130549796 -25080324 + B2_Mm1a SINE B2 2 158 -35 7 1581 189 0 0 0 chr4 130549796 130549817 -25080303 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 7 1581 1375 52 0 11 chr4 130549817 130549834 -25080286 + B2_Mm1a SINE B2 159 174 -19 7 1581 8453 53 22 35 chr4 130549834 130549895 -25080225 + MTA_Mm-int LTR MaLR 1051 1098 0 6 1581 3418 48 2 0 chr4 130549895 130550290 -25079830 + MTA_Mm LTR MaLR 1 396 0 6 1581 1576 140 87 3 chr4 130550798 130551084 -25079036 + MTC LTR MaLR 1 310 -111 7 1581 232 119 16 78 chr4 130551144 130551208 -25078912 + MTC LTR MaLR 255 314 -107 7 1581 229 155 0 49 chr4 130551253 130551314 -25078806 + MTC LTR MaLR 238 295 -112 7 1581 248 170 0 0 chr4 130551487 130551540 -25078580 + MTC LTR MaLR 258 310 -111 7 1581 228 169 17 0 chr4 130551546 130551605 -25078515 + MTC LTR MaLR 251 310 -111 7 1581 538 255 36 48 chr4 130553997 130554162 -25075958 + B3A SINE B2 36 198 0 7 1581 484 289 48 29 chr4 130554186 130554465 -25075655 + L1ME2 LINE L1 5564 5856 -323 7 1581 408 40 0 0 chr4 130554574 130554624 -25075496 + (TGAG)n Simple_repeat Simple_repeat 1 50 0 7 1581 267 103 0 0 chr4 130555271 130555310 -25074810 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 7 1581 181 307 0 85 chr4 130555596 130555678 -25074442 - MIRc SINE MIR -28 240 166 8 1581 393 284 215 7 chr4 130556068 130556203 -25073917 + B4A SINE B4 119 281 -11 8 1581 216 0 0 0 chr4 130556605 130556629 -25073491 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1581 325 296 70 53 chr4 130557323 130557494 -25072626 - MTEb LTR MaLR -102 277 104 8 1581 230 383 36 27 chr4 130557527 130557637 -25072483 - MLT2B3 LTR ERVL -421 133 23 8 1581 252 370 18 53 chr4 130557545 130557659 -25072461 - MTEb LTR MaLR -269 110 1 8 1581 253 283 160 10 chr4 130557828 130557928 -25072192 + ORR1E LTR MaLR 35 149 -210 8 1581 285 20 82 0 chr4 130558041 130558090 -25072030 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 8 1581 243 209 0 0 chr4 130558373 130558416 -25071704 - MTEa LTR MaLR 0 379 337 8 1581 212 242 0 16 chr4 130558431 130558494 -25071626 + (GGGTG)n Simple_repeat Simple_repeat 4 65 0 8 1581 527 279 27 111 chr4 130558500 130558705 -25071415 - MTEa LTR MaLR -204 215 5 8 1581 357 350 47 53 chr4 130559443 130559580 -25070540 + L1MCa LINE L1 1708 1846 -4662 8 1581 658 289 51 84 chr4 130559580 130559950 -25070170 - ORR1E LTR MaLR -1 358 1 9 1581 357 350 47 53 chr4 130559950 130560002 -25070118 + L1MCa LINE L1 1847 1896 -4612 8 1581 569 283 0 14 chr4 130560166 130560306 -25069814 + ID_B1 SINE B4 78 215 -9 9 1581 441 0 0 0 chr4 130560306 130560355 -25069765 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1581 309 358 7 21 chr4 130560378 130560518 -25069602 + L1MCa LINE L1 2226 2363 -4145 8 1581 1151 204 19 0 chr4 130560521 130560732 -25069388 + B3 SINE B2 1 215 -1 9 1581 430 290 101 35 chr4 130560923 130561094 -25069026 + B3 SINE B2 20 192 -3 9 1581 370 261 177 29 chr4 130561096 130561305 -25068815 + HAL1 LINE L1 1453 1692 -815 9 1581 414 0 0 0 chr4 130561594 130561640 -25068480 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1581 436 191 77 50 chr4 130563480 130563587 -25066533 + BGLII_B LTR ERVK 91 208 -233 9 1581 225 0 0 0 chr4 130563587 130563612 -25066508 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1581 436 191 77 50 chr4 130563612 130563686 -25066434 + BGLII_B LTR ERVK 209 277 -164 9 1581 1381 256 23 99 chr4 130563679 130564255 -25065865 + RLTR31_Mur LTR ERVK 22 553 0 9 1581 511 259 39 110 chr4 130564679 130564861 -25065259 + MTE2a LTR MaLR 194 362 -17 1 1581 1662 109 208 26 chr4 130565009 130565151 -25064969 - RMER17C LTR ERVK 0 410 250 1 1581 717 63 0 0 chr4 130565151 130565246 -25064874 + (GGAGA)n Simple_repeat Simple_repeat 3 97 0 1 1581 1662 109 208 26 chr4 130565246 130565450 -25064670 - RMER17C LTR ERVK -161 249 1 1 1581 391 264 21 21 chr4 130566492 130566585 -25063535 - PB1D10 SINE Alu -7 110 18 1 1581 447 234 0 0 chr4 130566705 130566782 -25063338 + ID4_ SINE ID 2 78 -5 1 1581 247 221 11 11 chr4 130566784 130566871 -25063249 + (TA)n Simple_repeat Simple_repeat 2 88 0 1 1581 204 235 0 0 chr4 130566876 130566944 -25063176 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1 1581 353 247 38 25 chr4 130567332 130567470 -25062650 + L1MA8 LINE L1 5940 6079 -212 1 1581 283 254 0 40 chr4 130567619 130567693 -25062427 - MTD LTR MaLR 0 379 309 1 1581 389 218 88 35 chr4 130567693 130567710 -25062410 + B1F SINE Alu 30 149 0 1 1581 548 158 21 21 chr4 130567710 130567807 -25062313 + ID_B1 SINE B4 128 224 0 1 1581 265 343 14 0 chr4 130567809 130567862 -25062258 - MTD LTR MaLR -89 330 277 1 1581 4006 157 121 75 chr4 130567862 130568454 -25061666 + RMER19B LTR ERVK 1 576 -326 1 1581 2772 28 28 0 chr4 130568454 130568772 -25061348 - IAPLTR2b LTR ERVK 0 327 1 1 1581 4006 157 121 75 chr4 130568772 130569042 -25061078 + RMER19B LTR ERVK 577 902 0 1 1581 664 241 74 34 chr4 130569042 130569217 -25060903 - MTD LTR MaLR -150 269 88 1 1581 181 339 62 0 chr4 130569824 130569936 -25060184 - MIRb SINE MIR -74 194 76 1 1581 223 273 36 108 chr4 130570291 130570402 -25059718 - L2b LINE L2 -1 3374 3272 1 1581 999 64 0 0 chr4 130571039 130571179 -25058941 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 1581 633 265 153 35 chr4 130571363 130571566 -25058554 + B4 SINE B4 1 227 -65 1 1581 450 0 0 0 chr4 130571572 130571622 -25058498 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1581 709 279 152 5 chr4 130572403 130572626 -25057494 - MTD LTR MaLR -21 398 143 1 1581 495 268 92 61 chr4 130572683 130572846 -25057274 - MTD LTR MaLR -239 180 13 1 1581 181 250 170 57 chr4 130573091 130573197 -25056923 - MIRc SINE MIR -51 217 100 1 1581 677 45 11 0 chr4 130573845 130573934 -25056186 + (TC)n Simple_repeat Simple_repeat 2 91 0 1 1581 1124 144 112 19 chr4 130576001 130576207 -25053913 + URR1A DNA MER1_type 1 225 -1 1 1581 423 0 0 0 chr4 130576768 130576815 -25053305 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1581 193 250 80 40 chr4 130576864 130576939 -25053181 + MIRb SINE MIR 92 169 -99 1 1581 854 238 50 79 chr4 130577025 130577302 -25052818 - MTD LTR MaLR -111 285 41 1 1581 730 205 13 13 chr4 130577302 130577455 -25052665 - MTD-int LTR MaLR 0 1258 1106 1 1581 833 231 75 25 chr4 130577527 130577727 -25052393 + B3 SINE B2 2 211 -5 1 1581 226 292 10 119 chr4 130577778 130577879 -25052241 - MTEa LTR MaLR -289 90 1 1 1581 323 143 32 0 chr4 130579129 130579192 -25050928 + CT-rich Low_complexity Low_complexity 4 68 0 1 1581 358 255 0 39 chr4 130579477 130579579 -25050541 - L1MB2 LINE L1 -232 5939 5842 1 1581 571 222 174 0 chr4 130579769 130579936 -25050184 - MTEa LTR MaLR -159 220 25 1 1581 975 298 66 122 chr4 130579959 130580298 -25049822 - L1MB2 LINE L1 -1988 4152 3794 1 1581 1112 228 167 25 chr4 130580298 130580474 -25049646 - ORR1D2 LTR MaLR 0 370 159 1 1581 450 0 0 0 chr4 130580474 130580524 -25049596 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1581 414 0 0 0 chr4 130580524 130580569 -25049551 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1581 1112 228 167 25 chr4 130580569 130580715 -25049405 - ORR1D2 LTR MaLR -212 158 2 1 1581 975 298 66 122 chr4 130580715 130581659 -25048461 - L1MB2 LINE L1 -2347 3793 2941 1 1581 519 300 115 10 chr4 130581661 130581853 -25048267 - B3 SINE B2 -2 214 3 1 1581 487 198 126 0 chr4 130581939 130582050 -25048070 + B1_Mur3 SINE Alu 5 129 -20 1 1581 776 253 170 15 chr4 130582074 130582415 -25047705 - L1MB2 LINE L1 -3279 2861 2468 1 1581 508 138 17 0 chr4 130582820 130582936 -25047184 + (TATG)n Simple_repeat Simple_repeat 2 119 0 1 1581 436 205 0 0 chr4 130582936 130583019 -25047101 + (TGAA)n Simple_repeat Simple_repeat 3 85 0 1 1581 293 309 83 21 chr4 130583053 130583149 -25046971 - MIRc SINE MIR -116 152 51 1 1581 1201 170 9 26 chr4 130583455 130583684 -25046436 - URR1B DNA MER1_type 0 225 1 1 1581 1009 127 171 0 chr4 130584624 130584805 -25045315 + B3 SINE B2 5 216 0 1 1581 830 201 0 53 chr4 130584821 130584973 -25045147 + B1_Mur1 SINE Alu 3 146 -3 1 1581 366 23 0 0 chr4 130585040 130585083 -25045037 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1581 360 133 0 0 chr4 130585679 130585739 -25044381 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1581 200 213 0 60 chr4 130586287 130586337 -25043783 + L2a LINE L2 3119 3165 -261 1 1581 1586 195 71 64 chr4 130586364 130586783 -25043337 + RMER10A LTR ERVL 1 423 -19 1 1581 981 119 0 0 chr4 130586783 130586934 -25043186 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1581 1586 195 71 64 chr4 130586934 130586953 -25043167 + RMER10A LTR ERVL 424 442 0 1 1581 450 53 0 0 chr4 130587319 130587376 -25042744 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 1 1581 232 373 31 83 chr4 130587410 130587638 -25042482 - MIRb SINE MIR -32 236 21 1 1581 466 238 107 20 chr4 130587719 130587869 -25042251 - MTEb LTR MaLR 0 379 217 1 1581 1131 131 158 0 chr4 130588926 130589079 -25041041 + B3 SINE B2 1 154 -62 1 1581 488 81 0 13 chr4 130589079 130589154 -25040966 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1581 1131 131 158 0 chr4 130589154 130589183 -25040937 + B3 SINE B2 155 210 -6 1 1581 1243 61 43 0 chr4 130589224 130589388 -25040732 - B2_Mm2 SINE B2 -9 186 16 1 1581 747 247 122 8 chr4 130589397 130589642 -25040478 - Lx8 LINE L1 -34 7439 7167 1 1581 871 229 109 13 chr4 130589652 130589891 -25040229 - RMER1C Other Other -14 1328 1067 1 1581 646 270 72 30 chr4 130589891 130590284 -25039836 - RMER1B Other Other -513 829 158 1 1581 289 349 9 0 chr4 130590478 130590587 -25039533 - RMER1B Other Other -913 153 44 1 1581 180 0 0 0 chr4 130590675 130590695 -25039425 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1581 229 294 0 0 chr4 130590695 130590763 -25039357 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1581 391 250 86 9 chr4 130590929 130591034 -25039086 + B1F SINE Alu 18 130 -19 1 1581 299 250 16 0 chr4 130591066 130591130 -25038990 + ID4_ SINE ID 9 73 -10 1 1581 531 264 114 67 chr4 130591297 130591683 -25038437 - RMER10A LTR ERVL -27 415 12 1 1581 602 248 52 7 chr4 130592309 130592453 -25037667 + B3A SINE B2 21 172 -26 1 1581 435 83 0 0 chr4 130592453 130592513 -25037607 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1581 414 57 0 0 chr4 130592524 130592577 -25037543 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1581 180 384 27 0 chr4 130592633 130592706 -25037414 + MIRc SINE MIR 50 124 -144 1 1581 269 312 0 40 chr4 130592842 130592942 -25037178 + MIRb SINE MIR 159 254 -14 1 1581 351 0 0 0 chr4 130593296 130593335 -25036785 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1581 561 254 16 0 chr4 130594287 130594413 -25035707 + MIR SINE MIR 38 165 -97 1 1581 3152 51 37 25 chr4 130594803 130595205 -25034915 + MTB_Mm LTR MaLR 1 407 0 1 1581 533 202 10 10 chr4 130595648 130595748 -25034372 - PB1D10 SINE Alu -2 115 16 1 1581 430 303 9 0 chr4 130595665 130595774 -25034346 - ID_B1 SINE B4 -45 179 70 1 1581 477 273 41 48 chr4 130596391 130596537 -25033583 + B4A SINE B4 1 145 -147 1 1581 473 217 3 6 chr4 130596606 130596943 -25033177 + (CA)n Simple_repeat Simple_repeat 1 335 0 1 1581 798 47 0 0 chr4 130597002 130597109 -25033011 + (TC)n Simple_repeat Simple_repeat 2 108 0 1 1581 198 0 0 0 chr4 130597109 130597130 -25032990 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1581 266 258 32 0 chr4 130597292 130597354 -25032766 + MLT1H2 LTR MaLR 426 489 0 1 1581 268 278 51 77 chr4 130597397 130597592 -25032528 + MIR SINE MIR 2 191 -71 1 1581 498 241 45 13 chr4 130597602 130597779 -25032341 + B3 SINE B2 1 190 -5 1 1581 1384 89 0 6 chr4 130598442 130598623 -25031497 - B2_Mm2 SINE B2 -14 181 2 1 1581 182 216 14 0 chr4 130598682 130598756 -25031364 + GA-rich Low_complexity Low_complexity 2 76 0 1 1581 788 170 17 83 chr4 130598759 130598939 -25031181 - B3A SINE B2 -30 168 1 1 1581 192 323 32 0 chr4 130598942 130599004 -25031116 - MIRb SINE MIR -77 191 128 1 1581 441 0 0 0 chr4 130599161 130599210 -25030910 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1581 21 0 0 0 chr4 130599293 130599314 -25030806 + AT_rich Low_complexity Low_complexity 1 21 0 1 1581 1233 55 0 0 chr4 130599391 130599536 -25030584 + B1_Mm SINE Alu 1 145 -2 1 1581 1067 215 107 60 chr4 130599573 130599863 -25030257 + MTD LTR MaLR 81 389 -30 1 1581 1414 184 104 58 chr4 130599863 130600227 -25029893 + ORR1C2 LTR MaLR 4 384 0 1 1581 1067 215 107 60 chr4 130600227 130600253 -25029867 + MTD LTR MaLR 390 412 -7 1 1581 540 253 152 22 chr4 130600363 130600593 -25029527 + L1MA5 LINE L1 5707 5966 -334 1 1581 659 256 201 49 chr4 130600703 130601032 -25029088 + MTE2a LTR MaLR 1 379 0 1 1581 220 359 117 0 chr4 130601284 130601387 -25028733 + B4A SINE B4 84 198 -94 1 1581 331 330 29 19 chr4 130601295 130601400 -25028720 + PB1D10 SINE Alu 12 117 0 1 1581 243 368 53 0 chr4 130601493 130601645 -25028475 + L1M5 LINE L1 5612 5771 -408 1 1581 223 229 101 75 chr4 130602685 130602792 -25027328 - MIRc SINE MIR -130 138 26 1 1581 1728 170 107 8 chr4 130603465 130603821 -25026299 + MTC LTR MaLR 18 408 -13 1 1581 778 169 21 24 chr4 130603954 130604130 -25025990 - B3 SINE B2 -7 188 1 1 1581 804 186 0 0 chr4 130604419 130604586 -25025534 + (CTCA)n Simple_repeat Simple_repeat 1 167 0 1 1581 214 371 34 0 chr4 130604609 130604698 -25025422 - L2b LINE L2 0 3375 3284 1 1581 292 157 14 28 chr4 130604782 130604854 -25025266 + GA-rich Low_complexity Low_complexity 2 72 0 1 1581 387 0 0 0 chr4 130604966 130605009 -25025111 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1581 263 313 90 83 chr4 130605022 130605311 -25024809 - B4A SINE B4 0 292 2 1 1581 232 213 145 16 chr4 130606586 130606648 -25023472 - ID4 SINE ID -10 73 4 1 1581 265 321 87 41 chr4 130606757 130606952 -25023168 + MIRb SINE MIR 39 242 -26 1 1581 264 282 81 12 chr4 130607708 130607794 -25022326 + MIRc SINE MIR 120 211 -57 1 1581 284 316 139 45 chr4 130608617 130608862 -25021258 - MLT1C LTR MaLR -163 304 37 2 1581 841 235 0 85 chr4 130608895 130609095 -25021025 + B3A SINE B2 1 183 -15 2 1581 259 193 23 0 chr4 130609096 130609184 -25020936 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1581 648 244 91 24 chr4 130609201 130609541 -25020579 + L1MEc LINE L1 681 1043 -5357 2 1581 358 243 119 27 chr4 130609844 130610050 -25020070 + L1MEc LINE L1 1510 1765 -4650 2 1581 1538 205 153 3 chr4 130610155 130610508 -25019612 + MTD LTR MaLR 1 406 -13 2 1581 252 226 0 0 chr4 130610508 130610570 -25019550 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1581 991 269 48 41 chr4 130610596 130610797 -25019323 - B4 SINE B4 -18 274 77 2 1581 576 42 0 0 chr4 130610797 130610868 -25019252 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 2 1581 991 269 48 41 chr4 130610868 130610934 -25019186 - B4 SINE B4 -216 76 5 2 1581 3336 169 18 5 chr4 130611077 130611637 -25018483 - RLTR20D LTR ERVK 0 568 2 2 1581 949 173 90 4 chr4 130611638 130611662 -25018458 - MYSERV16_I-int LTR ERVK 0 2326 2300 2 1581 215 31 31 0 chr4 130611662 130611694 -25018426 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1581 931 183 81 4 chr4 130611694 130611916 -25018204 - MYSERV16_I-int LTR ERVK -27 2299 2062 2 1581 437 282 9 0 chr4 130611918 130612028 -25018092 + RSINE1 SINE B4 55 165 0 2 1581 217 206 47 47 chr4 130612060 130612167 -25017953 + A-rich Low_complexity Low_complexity 3 109 0 2 1581 831 48 0 0 chr4 130612572 130612676 -25017444 + (CCA)n Simple_repeat Simple_repeat 1 104 0 2 1581 327 181 125 0 chr4 130613638 130613710 -25016410 - ID2 SINE ID -1 82 2 2 1581 286 289 22 0 chr4 130613724 130613814 -25016306 + (CAT)n Simple_repeat Simple_repeat 3 94 0 2 1581 470 312 6 34 chr4 130613814 130613993 -25016127 + HAL1-2a_MD LINE L1 2345 2518 -506 2 1581 292 264 33 0 chr4 130614012 130614103 -25016017 + (CAT)n Simple_repeat Simple_repeat 2 95 0 2 1581 468 264 24 36 chr4 130614107 130614272 -25015848 + HAL1-2a_MD LINE L1 2345 2507 -517 2 1581 238 288 0 15 chr4 130614843 130614910 -25015210 - MLT1A LTR MaLR -8 366 301 2 1581 290 316 73 112 chr4 130615479 130615835 -25014285 + MLT2D LTR ERVL 52 393 -21 2 1581 513 47 0 0 chr4 130615967 130616031 -25014089 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1581 272 91 23 0 chr4 130616084 130616128 -25013992 + (AGGGGG)n Simple_repeat Simple_repeat 6 50 0 2 1581 357 276 92 23 chr4 130617243 130617373 -25012747 - MIR SINE MIR -45 217 79 2 1581 264 294 35 23 chr4 130617417 130617504 -25012616 - MIR3 SINE MIR -25 183 96 2 1581 236 362 98 7 chr4 130618918 130619071 -25011049 + LTR16C LTR ERVL 109 275 -214 2 1581 524 116 0 11 chr4 130619349 130619436 -25010684 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 2 1581 801 281 94 0 chr4 130619503 130619727 -25010393 - B4A SINE B4 0 292 48 2 1581 305 319 118 21 chr4 130620239 130620383 -25009737 - ERVL-E-int LTR ERVL -2623 3044 2887 2 1581 358 270 123 7 chr4 130621159 130621297 -25008823 + B4A SINE B4 138 291 -1 2 1581 242 219 16 0 chr4 130621297 130621361 -25008759 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1581 697 76 19 0 chr4 130621543 130621648 -25008472 + (CA)n Simple_repeat Simple_repeat 1 107 0 2 1581 483 18 0 0 chr4 130622808 130622864 -25007256 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1581 810 201 44 0 chr4 130622872 130623031 -25007089 - ID_B1 SINE B4 -58 166 1 2 1581 336 314 57 28 chr4 130623109 130623250 -25006870 + B4A SINE B4 1 145 -147 2 1581 227 265 0 0 chr4 130623402 130623451 -25006669 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1581 257 340 157 38 chr4 130623888 130624047 -25006073 + MER70B LTR ERVL 276 453 -125 2 1581 207 0 0 0 chr4 130624589 130624612 -25005508 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1581 1128 109 0 0 chr4 130624628 130624775 -25005345 - B1_Mus1 SINE Alu 0 148 2 2 1581 266 286 0 0 chr4 130624876 130624939 -25005181 + Lx8 LINE L1 6815 6877 -596 2 1581 555 305 41 15 chr4 130625081 130625371 -25004749 - L1M4 LINE L1 -742 5432 5138 2 1581 498 288 62 16 chr4 130625347 130625591 -25004529 - L1M4 LINE L1 -1736 4410 4156 2 1581 216 342 12 12 chr4 130625624 130625704 -25004416 - ID4_ SINE ID -2 81 2 2 1581 489 274 122 6 chr4 130625704 130625884 -25004236 - L1M4 LINE L1 -1981 4165 3965 2 1581 188 146 0 47 chr4 130625902 130625945 -25004175 + CT-rich Low_complexity Low_complexity 2 42 0 2 1581 390 329 38 23 chr4 130625950 130626299 -25003821 - L1M4 LINE L1 -2201 3945 3602 2 1581 1192 237 58 4 chr4 130626341 130626616 -25003504 + MTE2b LTR MaLR 3 292 -87 2 1581 447 125 0 0 chr4 130626766 130626838 -25003282 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1581 282 304 36 84 chr4 130626841 130627175 -25002945 + RMER17C LTR ERVK 80 397 -13 2 1581 242 216 51 102 chr4 130627127 130627225 -25002895 + MTE2b LTR MaLR 287 379 0 2 1581 230 250 0 81 chr4 130627578 130627652 -25002468 + ID4_ SINE ID 5 72 -11 2 1581 1198 73 39 17 chr4 130627587 130627767 -25002353 + B2_Mm2 SINE B2 12 195 0 2 1581 1573 259 33 49 chr4 130628064 130628555 -25001565 - RMER5 LTR ERV1 -8 526 44 2 1581 210 260 0 0 chr4 130628597 130628647 -25001473 - B1F SINE Alu -99 50 1 2 1581 234 296 67 95 chr4 130628915 130629094 -25001026 + RMER2 LTR ERV1 367 540 -27 2 1581 274 171 12 48 chr4 130629309 130629394 -25000726 + L2a LINE L2 3314 3425 -1 2 1581 1134 174 115 37 chr4 130629625 130629685 -25000435 - ORR1C2 LTR MaLR -5 379 320 2 1581 1848 129 157 26 chr4 130629685 130629850 -25000270 - RMER10B LTR ERVL 0 398 221 2 1581 698 0 12 0 chr4 130629850 130629932 -25000188 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1581 1848 129 157 26 chr4 130629932 130630117 -25000003 - RMER10B LTR ERVL -178 220 2 2 1581 1134 181 120 39 chr4 130630117 130630388 -24999732 - ORR1C2 LTR MaLR -65 319 1 2 1581 636 299 79 61 chr4 130630520 130630798 -24999322 + B4A SINE B4 3 285 -7 2 1581 726 161 239 0 chr4 130632078 130632233 -24997887 + B2_Mm1t SINE B2 2 193 0 2 1581 23 0 0 0 chr4 130632262 130632285 -24997835 + AT_rich Low_complexity Low_complexity 1 23 0 2 1581 895 200 72 34 chr4 130632325 130632532 -24997588 - B3 SINE B2 -1 215 1 2 1581 253 93 18 18 chr4 130633687 130633742 -24996378 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1581 497 279 16 8 chr4 130633751 130633874 -24996246 - RSINE1 SINE B4 -31 134 11 2 1581 268 212 44 29 chr4 130634728 130634796 -24995324 - MIRc SINE MIR -119 149 81 2 1581 186 333 105 8 chr4 130635350 130635474 -24994646 + MIR3 SINE MIR 22 157 -51 2 1581 486 0 0 0 chr4 130636380 130636434 -24993686 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1581 351 181 10 21 chr4 130637199 130637295 -24992825 - Lx2 LINE L1 0 6997 6903 2 1581 590 165 8 76 chr4 130638845 130638976 -24991144 + MTC LTR MaLR 2 123 -298 2 1581 1246 124 23 23 chr4 130638965 130639179 -24990941 - URR1A DNA MER1_type -12 214 1 2 1581 1051 136 203 8 chr4 130639181 130639444 -24990676 + MTC LTR MaLR 106 419 -2 2 1581 2082 134 3 59 chr4 130639760 130639823 -24990297 - ORR1A2 LTR MaLR -2 325 269 2 1581 1451 74 0 26 chr4 130639823 130640018 -24990102 - B2_Mm2 SINE B2 -5 190 1 2 1581 2082 134 3 59 chr4 130640018 130640295 -24989825 - ORR1A2 LTR MaLR -59 268 4 2 1581 680 295 122 48 chr4 130640400 130640753 -24989367 + MTEb LTR MaLR 1 379 0 2 1581 411 38 0 0 chr4 130640815 130640868 -24989252 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1581 223 315 0 14 chr4 130641919 130641993 -24988127 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2 1581 222 222 0 0 chr4 130642008 130642062 -24988058 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1581 395 335 5 38 chr4 130642096 130642282 -24987838 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1581 455 202 9 0 chr4 130642294 130642408 -24987712 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1581 870 302 107 16 chr4 130643094 130643478 -24986642 + MTD LTR MaLR 1 419 0 2 1581 216 86 0 0 chr4 130643813 130643848 -24986272 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1581 1194 74 0 0 chr4 130643853 130644001 -24986119 - B1_Mus1 SINE Alu 0 148 1 2 1581 246 128 0 0 chr4 130644323 130644362 -24985758 + (GGGAGA)n Simple_repeat Simple_repeat 3 41 0 2 1581 687 275 36 0 chr4 130647344 130647537 -24982583 + ID_B1 SINE B4 3 202 -22 2 1581 348 298 77 32 chr4 130648292 130648448 -24981672 - MLT1A1 LTR MaLR 0 408 246 2 1581 729 134 0 27 chr4 130648572 130648756 -24981364 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1581 422 248 16 182 chr4 130648775 130648967 -24981153 - RSINE1 SINE B4 -2 163 4 2 1581 1937 193 49 30 chr4 130649188 130649593 -24980527 + MTC LTR MaLR 1 413 -8 2 1581 995 183 21 0 chr4 130649630 130649816 -24980304 - B3 SINE B2 -17 199 10 2 1581 488 311 0 0 chr4 130650009 130650292 -24979828 + (CA)n Simple_repeat Simple_repeat 1 283 0 2 1581 325 394 54 0 chr4 130650349 130650552 -24979568 - L1MDb LINE L1 -4911 1591 1378 2 1581 267 262 0 0 chr4 130650570 130650631 -24979489 - ID_B1 SINE B4 -6 218 158 2 1581 240 322 106 53 chr4 130650851 130651002 -24979118 + RLTR14 LTR ERV1 224 382 0 2 1581 391 234 37 3 chr4 130651002 130651082 -24979038 - B1F2 SINE Alu -60 87 1 2 1581 501 275 172 19 chr4 130651104 130651464 -24978656 - L1MDb LINE L1 -5029 1380 966 2 1581 401 259 16 54 chr4 130651851 130652035 -24978085 + (CCCCAG)n Simple_repeat Simple_repeat 2 178 0 2 1581 317 266 27 65 chr4 130652126 130652311 -24977809 + (CCCCAG)n Simple_repeat Simple_repeat 2 179 0 2 1581 261 287 23 51 chr4 130652351 130652527 -24977593 + (CCCCAG)n Simple_repeat Simple_repeat 2 172 0 2 1581 228 321 58 42 chr4 130653267 130653403 -24976717 - MIRc SINE MIR -37 171 34 2 1581 225 156 0 22 chr4 130653512 130653558 -24976562 + MER117 DNA MER1_type 121 165 -32 2 1581 1158 222 152 15 chr4 130653732 130654075 -24976045 - RMER16 LTR ERVK 0 533 144 2 1581 4200 62 2 0 chr4 130655324 130655826 -24974294 + RLTR1C LTR ERV1 1 503 0 2 1581 415 132 26 13 chr4 130656750 130656827 -24973293 - L5 LINE RTE -4 2261 2184 2 1581 275 308 110 14 chr4 130657058 130657203 -24972917 + MIRb SINE MIR 96 254 -14 2 1581 471 280 16 37 chr4 130658591 130658613 -24971507 - HAL1-2a_MD LINE L1 -495 2529 2511 2 1581 186 43 0 0 chr4 130658613 130658636 -24971484 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 1581 471 280 16 37 chr4 130658636 130658802 -24971318 - HAL1-2a_MD LINE L1 -514 2510 2346 2 1581 395 251 3 113 chr4 130658805 130658851 -24971269 + MT2B LTR ERVL 118 150 -434 2 1581 989 128 0 0 chr4 130658851 130659000 -24971120 + B1_Mur4 SINE Alu 2 150 0 2 1581 21 0 0 0 chr4 130659058 130659079 -24971041 + AT_rich Low_complexity Low_complexity 1 21 0 3 1581 1874 172 99 44 chr4 130659291 130659571 -24970549 + RMER5 LTR ERV1 31 324 -210 3 1581 576 29 0 0 chr4 130659571 130659641 -24970479 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1581 1874 172 99 44 chr4 130659641 130659816 -24970304 + RMER5 LTR ERV1 325 511 -23 3 1581 265 352 52 56 chr4 130659869 130660150 -24969970 + L2a LINE L2 3074 3401 -25 3 1581 304 359 76 5 chr4 130660624 130660809 -24969311 + ERVL-int LTR ERVL 3111 3308 -2359 3 1581 263 256 155 28 chr4 130660846 130661027 -24969093 + ERVL-int LTR ERVL 3449 3652 -1833 3 1581 318 278 63 8 chr4 130661176 130661303 -24968817 + ERVL-int LTR ERVL 3848 3981 -1686 3 1581 397 331 97 0 chr4 130661315 130661490 -24968630 + ERVL-int LTR ERVL 4124 4315 -1442 3 1581 407 343 72 19 chr4 130661701 130661909 -24968211 - RMER15 LTR ERVL -15 560 342 3 1581 259 234 47 0 chr4 130662561 130662625 -24967495 - ID4_ SINE ID -16 67 1 3 1581 413 238 78 16 chr4 130662626 130662754 -24967366 - B1F SINE Alu 0 149 14 3 1581 324 252 55 11 chr4 130662755 130662860 -24967260 + ERVL-int LTR ERVL 4930 5083 -674 3 1581 994 309 135 29 chr4 130663459 130664126 -24965994 + LTR41 LTR ERVL 3 740 -28 3 1581 180 0 0 0 chr4 130665237 130665257 -24964863 + (TGG)n Simple_repeat Simple_repeat 2 21 0 3 1581 211 300 14 0 chr4 130667777 130667847 -24962273 + (CATA)n Simple_repeat Simple_repeat 4 74 0 3 1581 462 345 0 0 chr4 130667881 130668055 -24962065 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 1581 473 328 0 32 chr4 130668123 130668309 -24961811 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1581 212 329 12 0 chr4 130668261 130668343 -24961777 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 3 1581 196 262 153 12 chr4 130668758 130668843 -24961277 + MIRc SINE MIR 48 144 -124 3 1581 309 246 75 19 chr4 130669068 130669183 -24960937 + MIRb SINE MIR 117 238 -38 3 1581 1118 207 5 19 chr4 130673020 130673232 -24956888 - ID_B1 SINE B4 0 224 16 3 1581 236 233 79 40 chr4 130673272 130673348 -24956772 + MLT1B LTR MaLR 45 123 -267 3 1581 499 284 42 14 chr4 130673427 130673570 -24956550 - B1F SINE Alu -2 147 1 3 1581 182 354 141 16 chr4 130674069 130674253 -24955867 + MIRb SINE MIR 6 212 -56 3 1581 523 347 0 50 chr4 130675358 130675537 -24954583 + B3A SINE B2 29 198 0 3 1581 1686 207 143 46 chr4 130675860 130676341 -24953779 + RLTR11A LTR ERVK 1 528 0 3 1581 576 42 0 0 chr4 130677535 130677606 -24952514 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1581 272 301 85 115 chr4 130678005 130678170 -24951950 + RSINE1 SINE B4 6 165 0 3 1581 406 186 16 58 chr4 130678209 130678397 -24951723 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1581 213 239 0 0 chr4 130678436 130678482 -24951638 + ID4 SINE ID 2 47 -36 3 197 654 249 115 99 chr4 130678491 130678803 -24951317 + ORR1E LTR MaLR 38 354 -5 3 1582 216 190 33 33 chr4 130679367 130679427 -24950693 + PB1 SINE Alu 1 60 -67 3 1582 198 171 0 0 chr4 130679431 130679472 -24950648 + GA-rich Low_complexity Low_complexity 2 42 0 3 1582 470 221 0 0 chr4 130679473 130679568 -24950552 + ID_B1 SINE B4 123 217 -7 3 1582 817 203 45 56 chr4 130679579 130679777 -24950343 + B3A SINE B2 1 196 -2 3 1582 626 146 0 28 chr4 130679876 130679982 -24950138 - B1_Mur3 SINE Alu 0 149 47 3 1582 180 0 0 0 chr4 130679987 130680007 -24950113 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1582 198 0 0 0 chr4 130680731 130680753 -24949367 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 3 1582 975 238 139 0 chr4 130680797 130681020 -24949100 - B4A SINE B4 -15 277 24 3 1582 326 266 14 0 chr4 130682054 130682168 -24947952 - L1M LINE L1 -730 5450 5334 3 1582 269 330 16 57 chr4 130682512 130682546 -24947574 - B2_Mm2 SINE B2 -4 191 7 3 1582 576 252 25 50 chr4 130682546 130682705 -24947415 - RSINE1 SINE B4 -3 162 8 3 1582 329 285 47 29 chr4 130682994 130683158 -24946962 - MIRb SINE MIR -98 178 10 3 1582 257 218 0 22 chr4 130683247 130683336 -24946784 + (CATA)n Simple_repeat Simple_repeat 4 90 0 3 1582 315 152 0 0 chr4 130683420 130683499 -24946621 + (CAGAGA)n Simple_repeat Simple_repeat 3 81 0 3 1582 325 277 47 60 chr4 130683499 130683649 -24946471 + HAL1-3A_ME LINE L1 1978 2125 -733 3 1582 486 139 0 0 chr4 130683912 130683998 -24946122 + (GGA)n Simple_repeat Simple_repeat 2 87 0 3 1582 180 0 0 0 chr4 130684543 130684563 -24945557 + (CAGGC)n Simple_repeat Simple_repeat 2 21 0 3 1582 237 294 114 14 chr4 130685468 130685616 -24944504 + L2b LINE L2 3235 3381 -6 3 1582 663 78 0 0 chr4 130685617 130685707 -24944413 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1582 207 271 0 0 chr4 130687201 130687249 -24942871 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1582 1323 55 1 1 chr4 130687637 130687825 -24942295 + (CTGTG)n Simple_repeat Simple_repeat 1 188 0 3 1582 993 106 0 0 chr4 130687825 130688005 -24942115 + (GGCTG)n Simple_repeat Simple_repeat 1 180 0 3 1582 1107 110 3 3 chr4 130688005 130688265 -24941855 + (CTGTG)n Simple_repeat Simple_repeat 1 260 0 3 1582 195 221 71 29 chr4 130689060 130689130 -24940990 + L4 LINE RTE 1425 1497 -532 3 1582 1847 288 40 6 chr4 130689304 130689807 -24940313 + Lx6 LINE L1 6941 7460 0 3 1582 299 317 0 37 chr4 130690190 130690298 -24939822 + G-rich Low_complexity Low_complexity 6 109 0 3 1582 270 216 0 0 chr4 130691453 130691527 -24938593 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1582 361 304 40 68 chr4 130691566 130691714 -24938406 - B4 SINE B4 -96 196 53 3 1582 240 86 0 0 chr4 130691778 130691813 -24938307 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 3 1582 1027 130 7 0 chr4 130691828 130691974 -24938146 - B1_Mur4 SINE Alu -1 149 3 3 1582 1602 223 33 33 chr4 130691983 130692377 -24937743 + MTD LTR MaLR 12 405 -14 3 1582 327 355 18 8 chr4 130692499 130692645 -24937475 - MLT1B LTR MaLR -52 338 174 3 1582 430 240 0 133 chr4 130692843 130692963 -24937157 + B1F SINE Alu 24 127 -22 3 1582 372 212 0 12 chr4 130692929 130693015 -24937105 + B1F1 SINE Alu 65 149 0 3 1582 252 301 164 29 chr4 130693143 130693314 -24936806 - MIRb SINE MIR -54 214 21 3 1582 1603 27 27 0 chr4 130694415 130694600 -24935520 + B2_Mm1a SINE B2 2 191 -2 3 1582 267 103 0 0 chr4 130694638 130694677 -24935443 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1582 534 302 0 13 chr4 130694765 130694916 -24935204 - RSINE1 SINE B4 -14 151 3 3 1582 227 291 48 0 chr4 130695314 130695432 -24934688 - L1M5 LINE L1 -2172 3974 3850 3 1582 289 226 16 16 chr4 130695601 130695664 -24934456 - ID4_ SINE ID -19 64 2 3 1582 436 273 5 14 chr4 130695694 130695843 -24934277 + B3 SINE B2 1 145 -50 3 1582 2194 143 10 75 chr4 130696188 130696604 -24933516 + ORR1B1 LTR MaLR 6 394 0 3 1582 307 350 104 61 chr4 130696625 130696951 -24933169 - L1M5 LINE L1 -2634 3512 3173 3 1582 252 296 14 14 chr4 130697439 130697511 -24932609 + ID4_ SINE ID 2 73 -10 3 1582 513 312 181 8 chr4 130698140 130698405 -24931715 + LTR31 LTR ERV1 261 571 -48 3 1582 474 284 11 82 chr4 130698734 130698918 -24931202 + MTE2a LTR MaLR 21 191 -188 3 1582 23 0 0 0 chr4 130699233 130699256 -24930864 + AT_rich Low_complexity Low_complexity 1 23 0 3 1582 2517 177 29 44 chr4 130699354 130699811 -24930309 - RMER4B LTR ERVK -47 538 83 3 1582 2947 41 3 3 chr4 130699811 130700157 -24929963 - ORR1A1 LTR MaLR 0 346 1 3 1582 2517 177 29 44 chr4 130700157 130700243 -24929877 - RMER4B LTR ERVK -503 82 3 3 1582 635 279 0 0 chr4 130700696 130700836 -24929284 - B1F2 SINE Alu 0 149 10 3 1582 267 224 9 67 chr4 130700917 130701022 -24929098 - L1M1 LINE L1 -409 5891 5793 3 1582 807 325 60 9 chr4 130701102 130701434 -24928686 - L1MC3 LINE L1 -1826 5959 5611 3 1582 562 289 15 35 chr4 130701564 130701761 -24928359 - B3A SINE B2 -2 196 4 3 1582 2085 108 19 0 chr4 130701784 130702098 -24928022 - ORR1A3 LTR MaLR 0 326 7 3 1582 472 230 175 63 chr4 130702129 130702352 -24927768 + RMER21B LTR ERV1 259 506 -336 3 1582 487 241 33 71 chr4 130702440 130702623 -24927497 - L1MC3 LINE L1 -881 5265 5090 3 1582 576 280 88 16 chr4 130702633 130702825 -24927295 + B4A SINE B4 1 206 -86 3 1582 201 94 0 0 chr4 130702848 130702880 -24927240 + (CCTA)n Simple_repeat Simple_repeat 1 32 0 3 1582 324 0 0 0 chr4 130702880 130702915 -24927205 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1582 396 0 0 0 chr4 130703011 130703055 -24927065 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3 1582 1205 27 0 45 chr4 130703103 130703257 -24926863 + B1_Mus2 SINE Alu 1 147 0 3 1582 414 330 79 43 chr4 130703564 130704020 -24926100 - L1MCb LINE L1 -5414 1337 781 3 1582 407 304 24 0 chr4 130704047 130704172 -24925948 - B1F SINE Alu -1 148 21 3 1582 632 277 184 0 chr4 130704373 130704579 -24925541 + B4A SINE B4 1 244 -48 3 1582 259 315 123 0 chr4 130704679 130704809 -24925311 - ERVL-B4-int LTR ERVL -3613 2101 1956 3 1582 516 238 61 8 chr4 130704853 130704984 -24925136 + ID_B1 SINE B4 86 223 -1 3 1582 294 149 23 11 chr4 130705225 130705313 -24924807 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 1582 196 345 0 0 chr4 130706780 130706838 -24923282 + MIRc SINE MIR 85 142 -126 3 1582 223 142 4 0 chr4 130707157 130707201 -24922919 + MIR SINE MIR 104 148 -60 3 1582 378 301 104 7 chr4 130707278 130707422 -24922698 - MIR SINE MIR -83 179 22 3 1582 750 239 31 58 chr4 130708089 130708280 -24921840 - B4 SINE B4 0 292 107 3 1582 435 312 53 83 chr4 130708535 130708822 -24921298 - RLTR26 LTR ERVK -120 507 168 3 1582 632 104 0 30 chr4 130709158 130709257 -24920863 - B1_Mur4 SINE Alu -1 149 54 3 1582 989 240 124 7 chr4 130709264 130709537 -24920583 + MTD LTR MaLR 115 419 0 3 1582 244 281 67 19 chr4 130710181 130710286 -24919834 - Tigger7 DNA MER2_type -33 2458 2349 3 1582 397 286 8 82 chr4 130710328 130710450 -24919670 - ORR1E LTR MaLR -246 113 1 4 1582 574 346 111 39 chr4 130710770 130711131 -24918989 - Tigger7 DNA MER2_type -2083 408 22 3 1582 289 361 8 8 chr4 130712036 130712167 -24917953 + MamRep4096 DNA hAT? 11 141 -285 4 1582 287 338 15 15 chr4 130712765 130712900 -24917220 - MIR SINE MIR -110 152 18 4 1582 246 225 27 27 chr4 130714275 130714348 -24915772 + C-rich Low_complexity Low_complexity 6 78 0 4 1582 443 286 49 51 chr4 130714724 130715008 -24915112 - MLT1L LTR MaLR -136 474 189 4 1582 214 250 39 0 chr4 130715396 130715448 -24914672 - MIRc SINE MIR -99 169 116 4 1582 291 54 0 0 chr4 130716376 130716413 -24913707 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1582 288 0 0 0 chr4 130716468 130716500 -24913620 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1582 196 312 53 11 chr4 130717303 130717397 -24912723 + MIR SINE MIR 163 260 -2 4 1582 227 277 85 0 chr4 130717772 130717866 -24912254 - ORR1D1 LTR MaLR -6 368 267 4 1582 234 0 0 0 chr4 130718089 130718115 -24912005 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1582 729 120 0 0 chr4 130718554 130718687 -24911433 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 1582 489 306 12 12 chr4 130718719 130718891 -24911229 + (CA)n Simple_repeat Simple_repeat 2 173 0 4 1582 2615 129 78 21 chr4 130718931 130719366 -24910754 - RMER6B LTR ERVK 0 461 2 4 1582 192 298 56 67 chr4 130719387 130719477 -24910643 + MIR SINE MIR 56 144 -118 4 1582 1881 159 36 45 chr4 130720558 130720888 -24909232 - ORR1A4 LTR MaLR 0 329 3 4 1582 906 217 310 11 chr4 130721146 130721430 -24908690 - ORR1D2 LTR MaLR 0 370 2 4 1582 571 95 19 0 chr4 130721857 130721962 -24908158 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 1582 3441 36 2 2 chr4 130721962 130722355 -24907765 + MTA_Mm LTR MaLR 4 396 0 4 1582 200 94 0 30 chr4 130722355 130722388 -24907732 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1582 589 264 67 45 chr4 130723533 130723718 -24906402 - MTE2b LTR MaLR -23 351 169 4 1582 1582 176 63 16 chr4 130723718 130724035 -24906085 - ORR1B1 LTR MaLR -2 392 61 4 1582 442 169 0 0 chr4 130724036 130724113 -24906007 - MTE2b LTR MaLR -277 117 41 4 1582 493 229 161 71 chr4 130724118 130724273 -24905847 - MTEa LTR MaLR -193 186 18 4 1582 853 224 0 13 chr4 130724265 130724423 -24905697 + RSINE1 SINE B4 6 161 -4 4 1582 504 0 0 0 chr4 130725572 130725628 -24904492 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1582 235 253 63 42 chr4 130725980 130726075 -24904045 - L2a LINE L2 -113 3313 3217 4 1582 2037 164 3 35 chr4 130726819 130727191 -24902929 - RLTR24 LTR ERV1 -2 527 168 4 1582 1231 144 39 15 chr4 130727695 130727900 -24902220 - RLTR24 LTR ERV1 -317 212 3 4 1582 499 336 38 62 chr4 130727941 130728304 -24901816 - ORR1E LTR MaLR -2 357 1 4 1582 314 265 24 12 chr4 130728471 130728555 -24901565 - MTEb LTR MaLR -4 375 291 4 1582 2031 190 33 54 chr4 130728592 130729020 -24901100 + MTD LTR MaLR 1 419 0 4 1582 894 293 96 25 chr4 130729484 130729838 -24900282 - MER63B DNA AcHobo -50 386 8 4 1582 1865 199 25 28 chr4 130731216 130731615 -24898505 + RMER10B LTR ERVL 1 398 0 4 1582 569 248 14 43 chr4 130732090 130732127 -24897993 - RMER10B LTR ERVL -298 144 106 4 1582 969 9 0 0 chr4 130732127 130732237 -24897883 + (TCCCC)n Simple_repeat Simple_repeat 3 112 0 4 1582 585 211 0 0 chr4 130732237 130732347 -24897773 - RMER10B LTR ERVL -289 109 1 4 1582 191 108 0 26 chr4 130732433 130732458 -24897662 + (TCTCC)n Simple_repeat Simple_repeat 1 25 0 4 1582 465 19 0 0 chr4 130732458 130732512 -24897608 + (TTTTC)n Simple_repeat Simple_repeat 1 54 0 4 1582 191 108 0 26 chr4 130732512 130732524 -24897596 + (TCTCC)n Simple_repeat Simple_repeat 5 15 0 4 1582 291 153 32 105 chr4 130733226 130733321 -24896799 + RLTR19-int LTR ERVK 811 898 -5239 4 1582 1485 309 86 90 chr4 130733825 130734506 -24895614 + MTC-int LTR MaLR 438 1225 -33 4 1582 1447 63 26 16 chr4 130734645 130734838 -24895282 + B2_Mm2 SINE B2 1 195 0 4 1582 2673 230 47 62 chr4 130734886 130735059 -24895061 + RLTR19-int LTR ERVK 2235 2338 -3799 4 1582 1182 75 0 0 chr4 130735059 130735206 -24894914 + B1_Mus2 SINE Alu 1 147 0 4 1582 2673 229 43 67 chr4 130735206 130735947 -24894173 + RLTR19-int LTR ERVK 2339 3066 -3071 4 1582 187 333 32 0 chr4 130735947 130736010 -24894110 - L3 LINE CR1 -2196 2293 2229 4 1582 1320 224 62 83 chr4 130736284 130736718 -24893402 + RLTR19-int LTR ERVK 3607 4031 -2106 4 1582 1541 189 17 62 chr4 130736772 130737128 -24892992 + RLTR19-int LTR ERVK 4038 4377 -1760 4 1582 965 229 55 38 chr4 130738329 130738646 -24891474 + RLTR20C LTR ERVK 2 266 -239 4 1582 299 320 60 0 chr4 130739177 130739277 -24890843 + MIR3 SINE MIR 79 184 -24 4 1582 803 320 98 30 chr4 130739482 130740113 -24890007 + L1M4c LINE L1 258 931 -5453 4 1582 243 146 0 0 chr4 130740113 130740154 -24889966 + (CTG)n Simple_repeat Simple_repeat 1 41 0 4 1582 425 252 9 26 chr4 130740257 130740371 -24889749 - MTEa LTR MaLR -70 309 198 4 1582 226 250 29 0 chr4 130740439 130740507 -24889613 - RLTR22_Mus LTR ERVK -476 1332 1263 4 1582 362 264 68 50 chr4 130740525 130740744 -24889376 - RMER12 LTR ERVK -330 992 770 4 1582 354 233 0 0 chr4 130740744 130740830 -24889290 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 1582 284 280 69 37 chr4 130740843 130740932 -24889188 + L1M4c LINE L1 1014 1106 -5278 4 1582 711 321 95 9 chr4 130740932 130741268 -24888852 + MLT1A0 LTR MaLR 1 365 0 4 1582 284 280 69 37 chr4 130741268 130741367 -24888753 + L1M4c LINE L1 1107 1208 -5176 4 1582 310 309 20 10 chr4 130741370 130741468 -24888652 + MTE2b LTR MaLR 248 346 -33 4 1582 842 234 76 0 chr4 130741566 130741750 -24888370 + B3 SINE B2 13 210 -6 4 1582 981 247 20 56 chr4 130741866 130742140 -24887980 - ID_B1 SINE B4 0 292 8 4 1582 912 286 75 40 chr4 130742140 130742252 -24887868 + L1M4c LINE L1 1961 2079 -4305 4 1582 2437 144 13 8 chr4 130742252 130742644 -24887476 - ORR1B1 LTR MaLR 0 394 1 4 1582 912 286 75 40 chr4 130742644 130742837 -24887283 + L1M4c LINE L1 2080 2274 -4110 4 1582 792 103 0 0 chr4 130742837 130742953 -24887167 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 4 1582 912 285 66 17 chr4 130742953 130743216 -24886904 + L1M4c LINE L1 2275 2550 -3826 4 1582 251 357 71 83 chr4 130745779 130745901 -24884219 + ORR1E LTR MaLR 2 119 -240 4 1582 3946 160 88 93 chr4 130745901 130746805 -24883315 - RMER19B LTR ERVK 0 902 3 4 1582 251 357 71 83 chr4 130746805 130747021 -24883099 + ORR1E LTR MaLR 120 336 -23 4 1582 189 132 0 0 chr4 130747835 130747873 -24882247 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 4 1582 801 0 0 0 chr4 130750506 130750595 -24879525 + (CTGGGG)n Simple_repeat Simple_repeat 4 92 0 4 1582 367 286 114 25 chr4 130750765 130750966 -24879154 + RMER12 LTR ERVK 770 988 -334 4 1582 649 216 0 17 chr4 130750978 130751280 -24878840 + (TG)n Simple_repeat Simple_repeat 1 296 0 4 1582 411 304 82 55 chr4 130751297 130751505 -24878615 - B4A SINE B4 -10 282 58 4 1582 809 254 90 41 chr4 130751505 130751772 -24878348 - B4A SINE B4 -10 282 3 4 1582 278 352 116 98 chr4 130751772 130751840 -24878280 - B4 SINE B4 -235 57 1 4 1582 407 300 111 12 chr4 130752203 130752375 -24877745 - MLT1J LTR MaLR -304 208 20 4 1582 508 289 29 4 chr4 130752586 130752733 -24877387 + B3A SINE B2 1 158 -35 4 1582 270 0 0 0 chr4 130752733 130752763 -24877357 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1582 370 343 73 11 chr4 130752763 130752792 -24877328 + B2_Mm1t SINE B2 159 187 -6 4 1582 303 222 0 100 chr4 130752959 130753059 -24877061 + L1MEc LINE L1 37 126 -6274 4 1582 256 306 50 67 chr4 130753227 130753465 -24876655 - L1MEc LINE L1 -4874 1526 1293 4 1582 341 349 104 19 chr4 130753483 130753945 -24876175 + L1MEc LINE L1 1738 2238 -4162 4 1582 1713 202 141 3 chr4 130754004 130754372 -24875748 - MTD LTR MaLR 0 419 1 4 1582 574 301 61 64 chr4 130754372 130754561 -24875559 + ORR1E LTR MaLR 13 205 -154 4 1582 1104 180 12 79 chr4 130754561 130754802 -24875318 - URR1B DNA MER1_type 0 225 1 4 1582 574 301 61 64 chr4 130754802 130754956 -24875164 + ORR1E LTR MaLR 206 355 -4 4 1582 439 340 83 39 chr4 130755243 130755317 -24874803 + L1MEc LINE L1 2629 2703 -3616 4 1582 2240 86 36 60 chr4 130755317 130755651 -24874469 + ORR1A3 LTR MaLR 1 326 0 4 1582 439 340 83 39 chr4 130755651 130756312 -24873808 + L1MEc LINE L1 2704 3395 -2924 4 1582 735 199 65 14 chr4 130756491 130756629 -24873491 - RSINE1 SINE B4 -19 146 2 4 1582 355 317 82 7 chr4 130756721 130756867 -24873253 + MLT1A1 LTR MaLR 122 278 -130 4 1582 1091 76 0 0 chr4 130756907 130757039 -24873081 + B1_Mus1 SINE Alu 2 133 -15 4 1582 489 34 0 0 chr4 130757039 130757098 -24873022 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1582 340 341 75 75 chr4 130757163 130757458 -24872662 + ORR1E LTR MaLR 50 344 -15 4 1582 521 297 20 46 chr4 130759085 130759237 -24870883 - B1F SINE Alu 0 149 2 4 1582 410 221 23 0 chr4 130759279 130759451 -24870669 + (ATG)n Simple_repeat Simple_repeat 3 178 0 4 1582 306 0 0 0 chr4 130759480 130759514 -24870606 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1582 264 299 0 0 chr4 130759518 130759585 -24870535 - ID4_ SINE ID -13 70 4 4 1582 327 49 0 0 chr4 130761089 130761130 -24868990 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1582 215 286 16 16 chr4 130761368 130761432 -24868688 - L2b LINE L2 -84 3291 3228 4 1582 263 327 130 7 chr4 130761531 130761685 -24868435 + MIRb SINE MIR 79 251 -17 4 1582 228 300 9 74 chr4 130761741 130761849 -24868271 - L2b LINE L2 -12 3363 3263 4 1582 1574 187 121 21 chr4 130762458 130762797 -24867323 + ORR1D1 LTR MaLR 1 373 -1 4 1582 285 284 22 40 chr4 130763043 130763209 -24866911 + GA-rich Low_complexity Low_complexity 1 162 0 4 1582 215 141 15 45 chr4 130763222 130763289 -24866831 + GA-rich Low_complexity Low_complexity 5 69 0 4 1582 495 239 80 0 chr4 130765051 130765164 -24864956 + B4A SINE B4 2 123 -169 4 1582 429 54 0 0 chr4 130765215 130765271 -24864849 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1582 751 218 10 96 chr4 130766980 130767188 -24862932 + B3A SINE B2 5 194 -4 4 1582 3285 219 55 20 chr4 130767223 130768151 -24861969 + RMER1C Other Other 45 1327 -15 4 1582 23 0 0 0 chr4 130768156 130768179 -24861941 + AT_rich Low_complexity Low_complexity 1 23 0 4 1582 558 323 86 16 chr4 130768185 130768500 -24861620 + L1MA4A LINE L1 5593 5929 -374 4 1582 192 75 0 102 chr4 130768592 130768651 -24861469 + G-rich Low_complexity Low_complexity 1 53 0 4 1582 210 270 114 48 chr4 130769029 130769134 -24860986 - MIR SINE MIR -69 139 28 4 1582 633 27 0 0 chr4 130769686 130769761 -24860359 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1582 216 210 0 0 chr4 130769761 130769842 -24860278 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1582 956 260 65 25 chr4 130769871 130770147 -24859973 - B4A SINE B4 -5 287 1 4 1582 812 341 68 29 chr4 130770272 130770931 -24859189 - L1ME1 LINE L1 -127 6225 5541 4 1582 752 237 130 30 chr4 130770951 130771221 -24858899 + MTC LTR MaLR 14 310 -111 5 1582 466 305 168 45 chr4 130771224 130771317 -24858803 - L1ME1 LINE L1 -5540 860 774 4 1582 1338 72 0 72 chr4 130771317 130771526 -24858594 - B2_Mm2 SINE B2 -1 194 1 5 1582 466 305 168 45 chr4 130771526 130771806 -24858314 - L1ME1 LINE L1 -5627 773 441 4 1582 23 0 0 0 chr4 130771823 130771846 -24858274 + GC_rich Low_complexity Low_complexity 1 23 0 5 1582 190 51 77 0 chr4 130772120 130772159 -24857961 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1582 211 320 9 57 chr4 130772385 130772491 -24857629 + L2b LINE L2 3263 3363 -12 5 1582 272 311 142 26 chr4 130772546 130772701 -24857419 - MIRb SINE MIR -17 251 79 5 1582 190 388 19 0 chr4 130772811 130772914 -24857206 + L2c LINE L2 3234 3338 -49 5 1582 767 140 275 18 chr4 130773021 130773188 -24856932 - URR1B DNA MER1_type -15 210 1 5 1582 342 0 0 0 chr4 130773761 130773799 -24856321 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1582 310 291 162 25 chr4 130774118 130774322 -24855798 - MLT2B1 LTR ERVL -108 412 181 5 1582 1038 187 0 111 chr4 130774376 130774611 -24855509 - URR1B DNA MER1_type -16 209 1 5 1582 21 36 0 0 chr4 130775130 130775158 -24854962 + AT_rich Low_complexity Low_complexity 1 28 0 5 1582 670 181 109 0 chr4 130775173 130775311 -24854809 - RSINE1 SINE B4 -10 155 3 5 1582 299 289 23 28 chr4 130775338 130775452 -24854668 - ID4 SINE ID -39 113 2 5 1582 216 277 0 0 chr4 130775612 130775695 -24854425 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 5 1582 333 382 20 20 chr4 130775991 130776138 -24853982 - L1M5 LINE L1 -1589 4557 4411 5 1582 226 352 132 24 chr4 130776154 130776320 -24853800 + MIRb SINE MIR 34 217 -51 5 1582 553 243 0 0 chr4 130776435 130776538 -24853582 + B4A SINE B4 187 289 -3 5 1582 453 19 0 0 chr4 130777335 130777389 -24852731 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1582 1072 272 11 22 chr4 130777445 130777719 -24852401 - B4A SINE B4 -4 288 18 5 1582 3639 32 5 0 chr4 130778031 130778465 -24851655 + RLTR10C LTR ERVK 1 436 0 5 1582 2610 92 53 3 chr4 130778465 130778845 -24851275 + MMERVK10C-int LTR ERVK 1 399 -7182 5 1582 40806 37 0 1 chr4 130778843 130783788 -24846332 + MMERVK10C-int LTR ERVK 870 5810 -1771 5 1582 7931 29 0 0 chr4 130783779 130784710 -24845410 + MMERVK10C-int LTR ERVK 6651 7581 0 5 1582 3688 25 5 0 chr4 130784710 130785144 -24844976 + RLTR10C LTR ERVK 1 436 0 5 1582 488 294 21 48 chr4 130785609 130785795 -24844325 - RMER15 LTR ERVL -58 517 337 5 1582 315 0 0 0 chr4 130785828 130785863 -24844257 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1582 298 309 27 68 chr4 130786086 130786104 -24844016 - ID_B1 SINE B4 -2 222 134 5 1582 421 242 58 0 chr4 130786104 130786224 -24843896 - B1F1 SINE Alu -13 136 10 5 1582 204 97 0 0 chr4 130786344 130786375 -24843745 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1582 446 195 113 17 chr4 130786422 130786537 -24843583 - B3A SINE B2 -71 127 2 5 1582 892 225 4 29 chr4 130786746 130786973 -24843147 + B3A SINE B2 2 214 -2 5 1582 213 167 24 0 chr4 130786976 130787018 -24843102 + (TAA)n Simple_repeat Simple_repeat 2 44 0 5 1582 409 226 79 24 chr4 130787332 130787459 -24842661 + B1F1 SINE Alu 3 136 -13 5 1582 488 153 35 23 chr4 130787598 130787772 -24842348 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1582 352 132 28 62 chr4 130787783 130787928 -24842192 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 1582 504 139 40 28 chr4 130787942 130788119 -24842001 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1582 235 286 0 16 chr4 130788175 130788239 -24841881 - B4A SINE B4 -14 278 216 5 1582 1004 189 10 20 chr4 130788257 130788452 -24841668 - B3 SINE B2 0 216 24 5 1582 485 250 130 56 chr4 130788455 130788671 -24841449 - B4A SINE B4 -59 233 2 5 1582 482 238 23 31 chr4 130788704 130788849 -24841271 + ORR1D1 LTR MaLR 1 137 -257 5 1582 232 130 0 92 chr4 130788827 130788903 -24841217 + ORR1B2 LTR MaLR 55 123 -244 5 1582 1133 175 178 14 chr4 130788870 130789188 -24840932 + ORR1B2 LTR MaLR 41 394 0 5 1582 639 219 40 7 chr4 130789501 130789653 -24840467 - RSINE1 SINE B4 -6 159 3 5 1582 424 331 93 24 chr4 130789792 130790126 -24839994 - L1M6 LINE L1 -4472 2024 1668 5 1582 798 214 105 20 chr4 130790601 130790801 -24839319 - ID_B1 SINE B4 -6 218 2 5 1582 623 254 25 56 chr4 130791953 130792149 -24837971 + MTD LTR MaLR 4 193 -226 5 1582 688 363 69 24 chr4 130792638 130793143 -24836977 + Arthur1 DNA Tip100 3361 3888 -59 5 1582 211 300 0 0 chr4 130793213 130793222 -24836898 + (CA)n Simple_repeat Simple_repeat 1 9 0 5 1582 402 115 0 0 chr4 130793222 130793283 -24836837 + (CGTG)n Simple_repeat Simple_repeat 3 63 0 5 1582 211 300 0 0 chr4 130793283 130793343 -24836777 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1582 666 0 0 0 chr4 130793910 130793984 -24836136 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 5 1582 2574 210 37 35 chr4 130795483 130796106 -24834014 - RMER20B LTR ERVK -2 625 2 5 1582 415 308 7 40 chr4 130796479 130796631 -24833489 + MLT1J1 LTR MaLR 18 164 -280 5 1582 1550 41 0 10 chr4 130797938 130798133 -24831987 - B2_Mm1t SINE B2 0 193 1 5 1582 595 255 6 31 chr4 130799206 130799368 -24830752 - RSINE1 SINE B4 -6 159 2 5 1582 192 97 0 0 chr4 130799792 130799823 -24830297 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 5 1582 243 0 0 0 chr4 130800381 130800408 -24829712 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1582 609 310 11 0 chr4 130800513 130800687 -24829433 + MTEb LTR MaLR 1 176 -203 5 1582 225 180 0 0 chr4 130802321 130802371 -24827749 + CT-rich Low_complexity Low_complexity 1 50 0 5 1582 413 265 145 0 chr4 130803363 130803529 -24826591 - MTEa LTR MaLR -4 375 186 5 1582 263 172 32 32 chr4 130803553 130803621 -24826499 + MIRc SINE MIR 79 146 -130 5 1582 1170 255 115 9 chr4 130803674 130804014 -24826106 + MTEb LTR MaLR 4 379 0 5 1582 496 270 30 35 chr4 130804873 130805042 -24825078 + HAL1-2a_MD LINE L1 2353 2520 -504 5 1582 970 189 16 16 chr4 130805320 130805514 -24824606 + B3 SINE B2 23 216 0 5 1582 509 258 52 15 chr4 130805550 130805684 -24824436 + ID_B1 SINE B4 82 220 -4 5 1582 259 98 0 56 chr4 130805692 130805746 -24824374 + GA-rich Low_complexity Low_complexity 3 53 0 5 1582 2820 138 30 22 chr4 130806235 130806739 -24823381 + Lx2 LINE L1 6490 6997 0 5 1582 453 285 56 0 chr4 130807038 130807182 -24822938 + RSINE1 SINE B4 3 154 -11 5 1582 763 188 109 16 chr4 130807239 130807379 -24822741 + B3 SINE B2 5 148 -68 5 1582 419 0 20 0 chr4 130807379 130807430 -24822690 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1582 763 188 109 16 chr4 130807430 130807473 -24822647 + B3 SINE B2 149 204 -12 5 1582 355 348 14 22 chr4 130808044 130808182 -24821938 + L2b LINE L2 3219 3355 -20 5 1582 193 302 0 19 chr4 130808338 130808392 -24821728 - MIR SINE MIR -123 139 87 5 1582 298 174 71 71 chr4 130809620 130809719 -24820401 + L1MC LINE L1 5199 5297 -849 5 1583 236 140 20 20 chr4 130810549 130810600 -24819520 + A-rich Low_complexity Low_complexity 3 53 0 5 1583 261 0 0 0 chr4 130810646 130810675 -24819445 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1583 351 239 99 18 chr4 130810693 130810804 -24819316 - B1F SINE Alu -29 120 1 5 1583 2029 154 63 46 chr4 130812025 130812439 -24817681 - MTC LTR MaLR 0 421 1 5 1583 252 132 0 0 chr4 130813580 130813610 -24816510 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1583 1230 14 0 20 chr4 130813610 130813760 -24816360 - B1_Mm SINE Alu 0 147 1 5 1583 252 132 0 0 chr4 130813760 130813782 -24816338 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1583 374 243 39 65 chr4 130813966 130814120 -24816000 + RSINE1 SINE B4 4 153 -12 5 1583 201 266 0 48 chr4 130814640 130814728 -24815392 + L2c LINE L2 3338 3426 0 5 1583 251 28 28 0 chr4 130814760 130814796 -24815324 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 5 1583 234 266 233 26 chr4 130816215 130816404 -24813716 + MIRb SINE MIR 39 266 -2 5 1583 258 276 41 31 chr4 130816520 130816617 -24813503 - L1M5 LINE L1 -252 5872 5775 5 1583 497 276 45 0 chr4 130817483 130817617 -24812503 - B1F SINE Alu -7 142 3 5 1583 311 228 25 25 chr4 130818159 130818258 -24811862 + MIR SINE MIR 29 127 -141 5 1583 328 329 106 31 chr4 130818854 130819014 -24811106 + MIRb SINE MIR 52 223 -45 5 1583 503 31 15 0 chr4 130820209 130820274 -24809846 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1583 312 286 127 8 chr4 130820289 130820423 -24809697 + MER115 DNA Tip100 498 647 -46 5 1583 224 333 25 0 chr4 130820687 130820768 -24809352 - L2a LINE L2 -346 3080 2998 5 1583 188 274 177 0 chr4 130821037 130821099 -24809021 + L2a LINE L2 2999 3071 -355 5 1583 257 264 170 44 chr4 130821213 130821348 -24808772 + L2a LINE L2 3274 3425 -1 5 1583 225 286 193 0 chr4 130822276 130822395 -24807725 + L2b LINE L2 3015 3156 -219 5 1583 185 152 30 0 chr4 130822586 130822619 -24807501 + MIRm SINE MIR 224 257 -19 5 1583 204 217 95 8 chr4 130823175 130823240 -24806880 + MIRc SINE MIR 107 179 -89 5 1583 463 348 49 4 chr4 130823358 130823583 -24806537 - L2a LINE L2 -251 3175 2941 5 1583 913 213 105 29 chr4 130823878 130824154 -24805966 + ORSL-2a DNA Tip100 20 316 -26 5 1583 422 289 26 0 chr4 130825047 130825161 -24804959 + MTEa LTR MaLR 1 117 -262 5 1583 474 101 0 0 chr4 130825201 130825270 -24804850 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1583 237 182 45 15 chr4 130825274 130825341 -24804779 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 5 1583 869 257 61 9 chr4 130825347 130825575 -24804545 - MTE2a LTR MaLR -75 304 65 5 1583 558 259 90 8 chr4 130826954 130827144 -24802976 + B4 SINE B4 63 266 -26 5 1583 396 0 0 0 chr4 130827144 130827188 -24802932 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1583 228 270 19 48 chr4 130827883 130827988 -24802132 + MIR SINE MIR 47 148 -60 5 1583 396 0 0 0 chr4 130828622 130828666 -24801454 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1583 777 67 0 0 chr4 130828824 130828928 -24801192 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 5 1583 585 0 0 0 chr4 130829688 130829753 -24800367 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1583 297 229 132 19 chr4 130831174 130831296 -24798824 - L1M5 LINE L1 -635 5809 5653 6 1583 301 371 66 40 chr4 130831592 130831819 -24798301 - L1M5 LINE L1 -630 5549 5317 6 1583 295 262 100 59 chr4 130831897 130832067 -24798053 - L1MD LINE L1 -948 5198 5022 6 1583 486 179 16 86 chr4 130832088 130832216 -24797904 - RSINE1 SINE B4 -43 122 4 6 1583 418 340 53 53 chr4 130832601 130832905 -24797215 - L1MC LINE L1 -2934 3212 2909 6 1583 667 315 148 23 chr4 130833868 130834125 -24795995 + B4 SINE B4 2 290 -2 6 1583 205 287 65 38 chr4 130834139 130834237 -24795883 - MIR SINE MIR -53 215 111 6 1583 423 288 138 64 chr4 130834352 130834650 -24795470 - MLT1C LTR MaLR -102 403 92 6 1583 186 43 0 0 chr4 130835713 130835736 -24794384 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1583 698 280 17 22 chr4 130836551 130836730 -24793390 + B3A SINE B2 4 181 -17 6 1583 586 299 60 28 chr4 130837352 130837569 -24792551 + RMER15 LTR ERVL 352 575 0 6 1583 237 122 324 0 chr4 130837515 130837589 -24792531 - LTR84b LTR ERVL -344 417 320 6 1583 332 235 0 14 chr4 130837951 130838020 -24792100 - RMER15 LTR ERVL -105 470 403 6 1583 388 244 124 136 chr4 130838078 130838343 -24791777 + B4A SINE B4 3 264 -28 6 1583 200 194 0 0 chr4 130838382 130838418 -24791702 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1583 343 353 44 73 chr4 130838702 130838974 -24791146 + MLT1K LTR MaLR 222 485 -110 6 1583 464 204 54 0 chr4 130839008 130839101 -24791019 + MTEa LTR MaLR 249 346 -33 6 1583 239 204 0 20 chr4 130840204 130840254 -24789866 - B4 SINE B4 -31 261 213 6 1583 307 321 107 0 chr4 130841487 130841646 -24788474 - MER63B DNA AcHobo -28 408 233 6 1583 469 171 35 35 chr4 130841718 130841803 -24788317 - B1F SINE Alu 0 149 65 6 1583 482 234 0 31 chr4 130841774 130841871 -24788249 - ID_B1 SINE B4 -24 200 107 6 1583 284 250 77 33 chr4 130841798 130841889 -24788231 - PB1D10 SINE Alu -22 95 1 6 1583 275 312 52 10 chr4 130841916 130842013 -24788107 - MER63B DNA AcHobo -335 101 1 6 1583 253 209 56 23 chr4 130842438 130842528 -24787592 - MIR SINE MIR -89 179 82 6 1583 239 307 34 11 chr4 130843159 130843248 -24786872 + MIRb SINE MIR 37 127 -141 6 1583 418 251 28 0 chr4 130844049 130844175 -24785945 - MIRc SINE MIR -140 136 6 6 1583 282 252 48 29 chr4 130844274 130844444 -24785676 + MIR SINE MIR 2 167 -109 6 1583 735 249 48 107 chr4 130844546 130844746 -24785374 + B4 SINE B4 1 197 -95 6 1583 276 30 0 0 chr4 130844746 130844779 -24785341 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1583 522 268 25 25 chr4 130844784 130844945 -24785175 + RSINE1 SINE B4 3 163 -2 6 1583 735 249 48 107 chr4 130844945 130845048 -24785072 + B4 SINE B4 201 292 0 6 1583 350 280 0 0 chr4 130845048 130845233 -24784887 + (CA)n Simple_repeat Simple_repeat 1 185 0 6 1583 359 308 0 0 chr4 130845268 130845385 -24784735 + (CA)n Simple_repeat Simple_repeat 1 117 0 6 1583 353 58 0 55 chr4 130845385 130845440 -24784680 + HAL1-3A_ME LINE L1 1976 2027 -831 6 1583 224 369 15 0 chr4 130845530 130845595 -24784525 + BC1_Mm scRNA scRNA 8 73 -79 6 1583 253 249 137 62 chr4 130846247 130846435 -24783685 - MIRc SINE MIR -52 224 29 6 1583 969 239 50 33 chr4 130846904 130847113 -24783007 + B4A SINE B4 1 209 -83 6 1583 831 72 0 0 chr4 130847113 130847224 -24782896 + (GAAA)n Simple_repeat Simple_repeat 1 111 0 6 1583 969 239 50 33 chr4 130847224 130847256 -24782864 + B4A SINE B4 210 246 -46 6 1583 405 0 0 0 chr4 130847256 130847301 -24782819 + (GAA)n Simple_repeat Simple_repeat 3 47 0 6 1583 303 253 0 107 chr4 130847303 130847387 -24782733 + B4A SINE B4 218 292 0 6 1583 419 378 0 0 chr4 130847391 130847571 -24782549 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1583 388 63 48 0 chr4 130847578 130847641 -24782479 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 6 1583 549 291 105 37 chr4 130847641 130848051 -24782069 + L1M3 LINE L1 4047 4484 -1656 6 1583 744 240 0 0 chr4 130848052 130848198 -24781922 + ID_B1 SINE B4 76 221 -3 6 1583 343 307 80 104 chr4 130848219 130848455 -24781665 + L1M3 LINE L1 4526 4768 -1378 6 1583 351 0 0 0 chr4 130848455 130848494 -24781626 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1583 343 305 81 107 chr4 130848494 130848692 -24781428 + L1M3 LINE L1 4763 4947 -1193 6 1583 459 276 474 0 chr4 130848703 130848952 -24781168 - MTE2a LTR MaLR -12 367 1 6 1583 480 295 92 48 chr4 130848962 130849354 -24780766 + L1M3 LINE L1 4971 5379 -767 6 1583 459 0 0 0 chr4 130850125 130850176 -24779944 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1583 265 243 1 14 chr4 130850290 130850372 -24779748 + L1M4b LINE L1 1906 1993 -4911 6 1583 256 150 88 0 chr4 130850401 130850481 -24779639 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1583 613 296 56 43 chr4 130850496 130850773 -24779347 + B4A SINE B4 7 290 -2 6 1583 180 312 46 15 chr4 130850895 130850960 -24779160 - MIRm SINE MIR -197 79 13 6 1583 303 178 33 33 chr4 130851195 130851375 -24778745 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1583 324 280 12 0 chr4 130851658 130851767 -24778353 - MIR SINE MIR -112 164 48 6 1583 199 281 15 30 chr4 130852102 130852168 -24777952 + MIR SINE MIR 119 183 -79 6 1583 429 20 0 0 chr4 130853261 130853311 -24776809 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1583 222 37 0 0 chr4 130853321 130853348 -24776772 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1583 378 184 24 0 chr4 130853405 130853530 -24776590 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1583 456 322 0 52 chr4 130853662 130853816 -24776304 + B1F SINE Alu 3 148 -1 6 1583 940 235 66 21 chr4 130854322 130854565 -24775555 + MTD LTR MaLR 166 419 0 6 1583 1268 243 6 166 chr4 130856035 130856553 -24773567 - BGLII_A LTR ERVK -10 435 1 6 1583 4134 230 32 49 chr4 130856553 130857845 -24772275 - MYSERV16_I-int LTR ERVK 0 2326 1056 6 1583 344 217 89 130 chr4 130857845 130858062 -24772058 - RMER4A LTR ERVK -34 551 245 6 1583 1480 227 25 96 chr4 130858065 130858696 -24771424 - MYSERV16_I-int LTR ERVK -1558 768 245 6 1583 1881 119 25 96 chr4 130859135 130859489 -24770631 + ORR1A4 LTR MaLR 1 329 0 6 1583 429 284 32 23 chr4 130862954 130863170 -24766950 + L1MEf LINE L1 1106 1323 -4877 6 1583 200 219 0 0 chr4 130863339 130863380 -24766740 - MIRc SINE MIR -116 152 112 6 1583 333 185 0 0 chr4 130864452 130864517 -24765603 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1583 483 216 0 0 chr4 130864573 130864689 -24765431 + (TATG)n Simple_repeat Simple_repeat 1 116 0 6 1583 2691 137 139 14 chr4 130864695 130865200 -24764920 - RMER4B LTR ERVK 0 585 18 6 1583 258 32 0 0 chr4 130865205 130865236 -24764884 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1583 1746 306 116 33 chr4 130865282 130866121 -24763999 - Lx8 LINE L1 -189 7284 6377 6 1583 377 253 11 0 chr4 130866147 130866238 -24763882 - RMER15-int LTR ERVL -743 4256 4165 6 1583 342 67 0 0 chr4 130866840 130866885 -24763235 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 6 1583 875 255 132 73 chr4 130868453 130868809 -24761311 + MTEa LTR MaLR 3 379 0 6 1583 1348 94 16 5 chr4 130868824 130869016 -24761104 + B2_Mm2 SINE B2 2 195 0 6 1583 2594 338 90 80 chr4 130869121 130869835 -24760285 + MTEa-int LTR MaLR 1 673 -907 6 1583 276 53 0 0 chr4 130869835 130869873 -24760247 + (CAA)n Simple_repeat Simple_repeat 3 40 0 6 1583 2594 338 90 80 chr4 130869873 130870485 -24759635 + MTEa-int LTR MaLR 674 1340 -240 6 1583 291 113 0 0 chr4 130870502 130870555 -24759565 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1583 432 0 0 0 chr4 130870686 130870734 -24759386 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1583 1041 165 110 16 chr4 130873145 130873336 -24756784 - B3 SINE B2 -6 210 2 6 1583 198 0 0 0 chr4 130873882 130873904 -24756216 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1583 714 274 0 13 chr4 130873904 130874063 -24756057 - RSINE1 SINE B4 -5 160 4 6 1583 676 250 26 42 chr4 130874113 130874305 -24755815 - B3A SINE B2 -8 190 2 6 1583 1393 306 66 16 chr4 130875365 130876110 -24754010 + L1ME1 LINE L1 2789 3570 -2576 6 1583 304 358 112 22 chr4 130876213 130876527 -24753593 + L1MC LINE L1 3741 4082 -2064 6 1583 1943 172 66 45 chr4 130876535 130876913 -24753207 - ORR1B1 LTR MaLR -8 386 1 6 1583 324 319 32 63 chr4 130876935 130877032 -24753088 + L1ME1 LINE L1 4105 4198 -1948 6 1583 222 37 0 0 chr4 130877032 130877059 -24753061 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1583 324 319 32 63 chr4 130877059 130877182 -24752938 + L1ME1 LINE L1 4199 4318 -1828 6 1583 319 353 89 21 chr4 130877267 130877458 -24752662 + L1ME1 LINE L1 4569 4772 -1374 6 1583 381 22 0 0 chr4 130877521 130877567 -24752553 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 6 1583 379 0 39 0 chr4 130877592 130877643 -24752477 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1583 427 298 141 0 chr4 130877656 130877777 -24752343 - RSINE1 SINE B4 -22 143 6 6 1583 292 330 78 0 chr4 130877963 130878066 -24752054 + PB1D7 SINE Alu 9 119 -1 6 1583 740 280 153 8 chr4 130878067 130878434 -24751686 + Lx8 LINE L1 6696 7115 -358 6 1583 365 286 57 22 chr4 130878571 130878765 -24751355 + L1ME1 LINE L1 5042 5244 -902 6 1583 656 183 0 11 chr4 130878799 130878981 -24751139 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1583 848 241 39 0 chr4 130879071 130879278 -24750842 + B3 SINE B2 2 216 0 6 1583 645 80 0 0 chr4 130879346 130879434 -24750686 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1583 424 200 12 12 chr4 130879485 130879566 -24750554 + B1F SINE Alu 69 149 0 6 1583 1000 68 0 14 chr4 130879567 130879715 -24750405 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 6 1583 242 311 49 56 chr4 130879726 130879869 -24750251 + L1ME1 LINE L1 5428 5569 -604 6 1583 348 363 118 43 chr4 130879895 130880405 -24749715 + L1ME1 LINE L1 5621 6168 -11 6 1583 2314 165 43 2 chr4 130880716 130881111 -24749009 + MTD LTR MaLR 1 411 -8 6 1583 398 313 11 99 chr4 130881226 130881407 -24748713 + B4A SINE B4 2 166 -126 6 1583 385 247 22 11 chr4 130882228 130882318 -24747802 - B1F2 SINE Alu -55 94 4 6 1583 222 37 0 0 chr4 130883833 130883860 -24746260 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 6 1583 493 270 82 73 chr4 130883904 130884250 -24745870 + ORR1E LTR MaLR 1 340 -30 6 1583 198 0 0 0 chr4 130884849 130884871 -24745249 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1583 550 353 14 63 chr4 130884876 130885028 -24745092 - ID_B1 SINE B4 -13 211 68 6 1583 2339 111 7 113 chr4 130885028 130885487 -24744633 - RMER17C LTR ERVK 0 410 1 6 1583 550 353 14 63 chr4 130885487 130885555 -24744565 - ID SINE ID -157 67 2 6 1583 204 273 0 29 chr4 130886104 130886172 -24743948 + G-rich Low_complexity Low_complexity 2 67 0 6 1583 449 136 74 0 chr4 130887089 130887170 -24742950 + B1_Mus2 SINE Alu 61 147 0 6 1583 267 326 11 0 chr4 130887538 130887627 -24742493 - MLT1K LTR MaLR -2 593 504 7 1583 473 231 0 44 chr4 130890324 130890437 -24739683 - RSINE1 SINE B4 -35 130 23 7 1583 556 293 47 91 chr4 130890839 130891158 -24738962 - RMER15 LTR ERVL 0 575 271 7 1583 745 235 101 91 chr4 130891215 130891501 -24738619 - RMER15-int LTR ERVL -5 4994 4706 7 1583 496 286 39 56 chr4 130891501 130891679 -24738441 + ID_B1 SINE B4 10 184 -40 7 1583 262 314 0 0 chr4 130891760 130891830 -24738290 - RMER15-int LTR ERVL -319 4680 4611 7 1583 651 257 11 53 chr4 130891873 130891927 -24738193 - RMER15-int LTR ERVL -673 4326 4282 7 1583 1036 249 191 14 chr4 130891927 130892282 -24737838 - MTD LTR MaLR -1 418 1 7 1583 651 257 11 53 chr4 130892282 130892416 -24737704 - RMER15-int LTR ERVL -718 4281 4146 7 1583 1743 309 53 81 chr4 130892554 130893447 -24736673 - RMER15-int LTR ERVL -2794 2205 1338 7 1583 279 114 0 0 chr4 130893459 130893503 -24736617 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1583 1005 197 0 36 chr4 130893507 130893702 -24736418 - B3 SINE B2 -28 188 1 7 1583 725 198 197 6 chr4 130893727 130893905 -24736215 + B3 SINE B2 1 212 -4 7 1583 2504 299 91 19 chr4 130893944 130894876 -24735244 - RMER15-int LTR ERVL -3740 1259 260 7 1583 2032 123 9 58 chr4 130894876 130895222 -24734898 - ORR1A4 LTR MaLR 0 329 1 7 1583 2504 299 91 19 chr4 130895222 130895236 -24734884 - RMER15-int LTR ERVL -4740 259 246 7 1583 400 263 10 20 chr4 130895240 130895341 -24734779 - RMER15 LTR ERVL -177 398 299 7 1583 460 318 72 36 chr4 130895512 130895763 -24734357 + Lx8 LINE L1 7131 7512 -132 7 1583 358 241 16 118 chr4 130895887 130896014 -24734106 + PB1D9 SINE Alu 7 120 0 7 1583 212 133 44 0 chr4 130896018 130896063 -24734057 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1583 183 80 0 0 chr4 130897347 130897372 -24732748 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1583 838 76 8 15 chr4 130898544 130898677 -24731443 + (GGAGA)n Simple_repeat Simple_repeat 4 135 0 7 1583 601 167 8 8 chr4 130898718 130898845 -24731275 + G-rich Low_complexity Low_complexity 3 129 0 7 1583 460 333 119 32 chr4 130899493 130899803 -24730317 - MLT-int LTR MaLR -1071 664 328 7 1583 338 329 97 0 chr4 130899876 130900031 -24730089 - ID_B1 SINE B4 -50 174 5 7 1583 1199 170 82 12 chr4 130900033 130900289 -24729831 - RLTR20D LTR ERVK 0 568 295 7 1583 461 198 107 9 chr4 130900321 130900433 -24729687 + MYSERV16_I-int LTR ERVK 391 513 -1813 7 1583 2775 135 51 21 chr4 130900421 130900949 -24729171 + MYSERV16_I-int LTR ERVK 1781 2324 -2 7 1583 1942 140 9 32 chr4 130900951 130901147 -24728973 + RLTR20D LTR ERVK 1 196 -372 7 1583 3198 41 2 2 chr4 130901147 130901541 -24728579 + MTA_Mm LTR MaLR 1 394 -2 7 1583 1942 140 9 32 chr4 130901541 130901690 -24728430 + RLTR20D LTR ERVK 197 338 -230 7 1583 537 146 10 10 chr4 130901690 130901787 -24728333 + RLTR20D LTR ERVK 472 568 0 7 1583 256 386 42 14 chr4 130902541 130902683 -24727437 + ORR1E LTR MaLR 4 149 -210 7 1583 251 203 97 83 chr4 130903112 130903237 -24726883 - MLT1A1 LTR MaLR -12 396 235 7 1583 1023 63 34 32 chr4 130903276 130904005 -24726115 + (TG)n Simple_repeat Simple_repeat 1 730 0 7 1583 197 310 106 23 chr4 130904368 130904500 -24725620 - MIRb SINE MIR -91 177 35 7 1583 253 302 77 45 chr4 130905560 130905716 -24724404 + RLTR22_Mur LTR ERVK 1301 1461 -387 7 1583 282 194 0 0 chr4 130905742 130905809 -24724311 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1583 298 304 40 20 chr4 130906352 130906500 -24723620 + L1ME4a LINE L1 5775 5925 -199 7 1583 297 276 10 20 chr4 130906520 130906620 -24723500 + GA-rich Low_complexity Low_complexity 1 99 0 7 1583 270 261 141 4 chr4 130906679 130906814 -24723306 - MIR SINE MIR -105 171 16 7 1583 246 196 39 0 chr4 130906933 130906984 -24723136 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 7 1583 318 173 0 0 chr4 130906989 130907064 -24723056 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1583 621 0 0 0 chr4 130907848 130907917 -24722203 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 7 1583 555 172 15 15 chr4 130907952 130908082 -24722038 + CT-rich Low_complexity Low_complexity 3 132 0 7 1583 231 326 65 0 chr4 130908433 130908546 -24721574 - MIRb SINE MIR -64 204 82 7 1583 246 337 23 0 chr4 130908732 130908818 -24721302 - MIRb SINE MIR -71 197 110 7 1583 267 346 107 28 chr4 130909269 130909476 -24720644 - L2a LINE L2 -2 3424 3181 7 1583 364 268 62 9 chr4 130909678 130909791 -24720329 + PB1D7 SINE Alu 1 119 -1 7 1583 231 360 32 81 chr4 130910166 130910290 -24719830 - MTEb LTR MaLR -247 132 15 7 1583 405 0 0 0 chr4 130910340 130910385 -24719735 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1583 315 282 223 62 chr4 130910561 130910803 -24719317 + B4 SINE B4 1 281 -11 7 1583 342 0 0 0 chr4 130910819 130910857 -24719263 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1583 382 226 21 11 chr4 130910863 130910957 -24719163 - L1MB1 LINE L1 -157 6011 5917 7 1583 447 194 0 55 chr4 130911151 130911315 -24718805 + (CACCAT)n Simple_repeat Simple_repeat 1 155 0 7 1583 333 238 28 3 chr4 130911661 130911765 -24718355 - MIRm SINE MIR -105 157 54 7 1583 381 294 104 41 chr4 130913176 130913396 -24716724 - RLTR12B LTR ERVK -199 329 96 7 1583 2448 149 76 15 chr4 130913802 130914278 -24715842 + RLTR16 LTR ERVK 1 505 0 7 1583 298 247 24 12 chr4 130914537 130914619 -24715501 + MLT1A1 LTR MaLR 80 162 -246 7 1583 833 230 54 58 chr4 130914621 130914648 -24715472 - MTE2a LTR MaLR 0 379 356 7 1583 1889 128 58 44 chr4 130914648 130915009 -24715111 - ORR1B2 LTR MaLR 0 367 2 7 1583 833 230 54 58 chr4 130915009 130915221 -24714899 - MTE2a LTR MaLR -24 355 141 7 1583 314 318 124 6 chr4 130915420 130915597 -24714523 - MLT2B1 LTR ERVL -319 201 4 7 1583 416 265 233 39 chr4 130916557 130916789 -24713331 - B4 SINE B4 -14 278 2 7 1583 213 225 0 0 chr4 130917355 130917395 -24712725 + CT-rich Low_complexity Low_complexity 2 41 0 7 1583 1756 133 58 43 chr4 130917920 130918319 -24711801 - RMER17C LTR ERVK 0 410 6 7 1583 226 267 26 13 chr4 130919960 130920036 -24710084 - MLT1A1 LTR MaLR -67 341 265 7 1583 628 218 143 46 chr4 130920040 130920256 -24709864 + RLTR12B LTR ERVK 11 247 -281 7 1583 513 276 68 45 chr4 130920281 130920588 -24709532 + RLTR12B LTR ERVK 205 516 -52 7 1583 274 315 118 23 chr4 130920988 130921209 -24708911 + MLT1F2 LTR MaLR 316 557 -3 7 1583 397 326 49 57 chr4 130922023 130922270 -24707850 + MLT1B LTR MaLR 67 311 -79 7 1583 478 222 7 0 chr4 130923687 130923811 -24706309 - B1_Mur2 SINE Alu -17 132 6 7 1583 478 262 84 65 chr4 130924070 130924225 -24705895 + RSINE1 SINE B4 8 165 0 7 1583 387 280 210 18 chr4 130924261 130924490 -24705630 + B4 SINE B4 4 276 -16 7 1583 238 299 11 44 chr4 130925115 130925206 -24704914 - L1M5 LINE L1 -413 5711 5624 7 1583 248 234 94 0 chr4 130926032 130926096 -24704024 + MTE2b LTR MaLR 298 367 -12 7 1583 305 314 72 8 chr4 130926376 130926501 -24703619 - L2a LINE L2 -1 3425 3293 7 1583 200 272 0 47 chr4 130926763 130926848 -24703272 + G-rich Low_complexity Low_complexity 3 83 0 7 1583 922 302 99 20 chr4 130926914 130927345 -24702775 - Arthur1 DNA Tip100 -40 3907 3446 7 1583 636 70 0 0 chr4 130927345 130927431 -24702689 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1583 922 291 31 28 chr4 130927431 130927512 -24702608 - Arthur1 DNA Tip100 -502 3445 3361 7 1583 313 269 17 13 chr4 130928873 130928969 -24701151 - ID4 SINE ID -49 103 6 7 1583 427 148 23 0 chr4 130928972 130929060 -24701060 + (TCTCTG)n Simple_repeat Simple_repeat 4 93 0 7 1583 301 218 8 36 chr4 130929078 130929162 -24700958 - PB1 SINE Alu 0 149 46 7 1583 306 132 0 0 chr4 130929589 130929642 -24700478 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1583 309 89 0 0 chr4 130929758 130929803 -24700317 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 7 1583 216 374 20 10 chr4 130930130 130930230 -24699890 - MIRb SINE MIR -148 120 20 7 1583 988 194 337 7 chr4 130930428 130930705 -24699415 - ORR1D2 LTR MaLR -2 368 1 7 1583 747 123 0 0 chr4 130931918 130932040 -24698080 + (TCC)n Simple_repeat Simple_repeat 1 122 0 7 1583 191 171 0 0 chr4 130933639 130933674 -24696446 - MIR SINE MIR -60 148 114 7 1583 547 332 38 25 chr4 130933820 130933933 -24696187 - RMER12 LTR ERVK -155 1417 1303 7 1583 297 89 0 0 chr4 130933933 130933978 -24696142 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1583 4049 157 61 89 chr4 130933978 130934904 -24695216 - RMER12 LTR ERVK -270 1302 1 7 1583 257 325 11 11 chr4 130934904 130934991 -24695129 - MIR SINE MIR -89 119 33 7 1583 388 283 191 55 chr4 130935927 130936237 -24693883 - MTEb LTR MaLR 0 379 6 7 1583 266 191 0 60 chr4 130937105 130937172 -24692948 + CT-rich Low_complexity Low_complexity 5 67 0 7 1583 180 295 114 13 chr4 130937965 130938044 -24692076 + MIRc SINE MIR 43 129 -139 7 1583 650 229 6 0 chr4 130938239 130938418 -24691702 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 7 1583 1050 144 0 0 chr4 130938452 130938632 -24691488 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 7 1583 537 167 0 0 chr4 130938662 130938764 -24691356 + (TGAA)n Simple_repeat Simple_repeat 1 102 0 7 1583 491 283 144 0 chr4 130939706 130939886 -24690234 - MER82 DNA MER2_type -116 537 332 7 1583 219 36 0 0 chr4 130940223 130940251 -24689869 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 197 188 365 73 20 chr4 130940800 130940951 -24689169 - L2 LINE L2 -986 2433 2275 7 1584 260 303 40 0 chr4 130941732 130941831 -24688289 - ID_B1 SINE B4 -3 221 119 7 1584 297 0 0 0 chr4 130941831 130941864 -24688256 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 7 1584 1191 62 6 0 chr4 130941864 130942024 -24688096 - B2_Mm2 SINE B2 -33 162 2 7 1584 520 297 40 7 chr4 130942025 130942174 -24687946 - ID_B1 SINE B4 -67 157 4 7 1584 290 333 49 120 chr4 130942502 130942870 -24687250 - L1MC4a LINE L1 -1985 5897 5556 7 1584 3847 50 19 21 chr4 130943849 130944362 -24685758 + RLTR1B LTR ERV1 1 512 0 7 1584 234 305 84 0 chr4 130944398 130944493 -24685627 - L1MC2 LINE L1 -27 6317 6215 7 1584 667 342 18 4 chr4 130944555 130944781 -24685339 + B4A SINE B4 47 275 -17 7 1584 228 241 52 0 chr4 130945043 130945101 -24685019 - ID_B1 SINE B4 -84 140 80 7 1584 238 273 22 22 chr4 130945146 130945236 -24684884 - L1MD3 LINE L1 -352 7643 7554 7 1584 506 243 131 19 chr4 130945366 130945745 -24684375 - L1MD3 LINE L1 -623 7162 6738 7 1584 213 309 0 36 chr4 130945851 130945935 -24684185 + CT-rich Low_complexity Low_complexity 3 83 0 7 1584 606 215 33 0 chr4 130945935 130946056 -24684064 - ID_B1 SINE B4 0 224 100 7 1584 320 340 23 70 chr4 130945940 130946111 -24684009 + YREP_Mm Unknown Unknown 182 344 -1468 7 1584 1482 275 48 23 chr4 130946140 130946853 -24683267 + L1MA8 LINE L1 5277 5989 -1655 7 1584 236 216 26 51 chr4 130947512 130947590 -24682530 - MIRm SINE MIR -132 144 69 7 1584 225 0 0 0 chr4 130948142 130948167 -24681953 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1584 422 310 8 34 chr4 130948178 130948295 -24681825 - RSINE1 SINE B4 -16 149 36 8 1584 1098 118 0 0 chr4 130948905 130949075 -24681045 + (CA)n Simple_repeat Simple_repeat 1 170 0 8 1584 294 29 0 0 chr4 130949076 130949111 -24681009 + (CACG)n Simple_repeat Simple_repeat 2 36 0 8 1584 486 206 130 84 chr4 130950545 130950699 -24679421 + MLT1A1 LTR MaLR 207 367 -41 8 1584 461 315 0 0 chr4 130950887 130950998 -24679122 - L3 LINE CR1 -97 4392 4282 8 1584 379 295 0 50 chr4 130951169 130951269 -24678851 - ID_B1 SINE B4 -12 212 118 8 1584 233 312 34 8 chr4 130951312 130951431 -24678689 + MIRb SINE MIR 76 197 -71 8 1584 324 309 55 22 chr4 130952143 130952330 -24677790 + MIRb SINE MIR 33 231 -37 8 1584 460 209 90 30 chr4 130952444 130952577 -24677543 - MLT1A1 LTR MaLR 0 408 268 8 1584 285 242 0 29 chr4 130952791 130952859 -24677261 - B4 SINE B4 -12 280 215 8 1584 297 264 33 33 chr4 130952955 130953045 -24677075 - RSINE1 SINE B4 -55 110 21 8 1584 258 242 217 11 chr4 130953050 130953142 -24676978 - B4 SINE B4 -67 225 115 8 1584 325 292 91 56 chr4 130953811 130954043 -24676077 - RMER15 LTR ERVL 0 575 336 8 1584 1669 197 48 8 chr4 130954667 130955021 -24675099 + ORR1D2 LTR MaLR 1 368 -2 8 1584 611 198 0 47 chr4 130955713 130955840 -24674280 + ID_B1 SINE B4 103 223 -1 8 1584 240 35 0 0 chr4 130956198 130956227 -24673893 + (CAG)n Simple_repeat Simple_repeat 1 29 0 8 1584 1119 290 19 13 chr4 130956907 130957218 -24672902 - MTE2b LTR MaLR -64 315 3 8 1584 831 183 0 0 chr4 130957590 130957765 -24672355 + (TGAG)n Simple_repeat Simple_repeat 1 175 0 8 1584 922 210 118 139 chr4 130958347 130958729 -24671391 + MTE2a LTR MaLR 1 374 -5 8 1584 1079 95 0 0 chr4 130958730 130958877 -24671243 + B1_Mus1 SINE Alu 2 148 0 8 1584 333 309 18 35 chr4 130958878 130958992 -24671128 + L1MDa LINE L1 2446 2557 -4076 8 1584 539 207 72 32 chr4 130959028 130959153 -24670967 - MTC LTR MaLR -275 146 17 8 1584 372 231 189 49 chr4 130960021 130960185 -24669935 - MTE2a LTR MaLR -2 377 191 8 1584 1011 218 171 7 chr4 130960177 130960463 -24669657 + MTC LTR MaLR 88 420 -1 8 1584 702 106 0 0 chr4 130960942 130961065 -24669055 + (TC)n Simple_repeat Simple_repeat 1 123 0 8 1584 432 0 0 0 chr4 130961065 130961113 -24669007 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1584 219 270 40 0 chr4 130961989 130962063 -24668057 + MIRb SINE MIR 42 118 -150 8 1584 391 265 31 0 chr4 130962679 130962777 -24667343 + RSINE1 SINE B4 3 103 -62 8 1584 369 303 42 150 chr4 130963781 130964254 -24665866 - RMER10A LTR ERVL -9 433 12 8 1584 389 317 114 13 chr4 130964779 130965006 -24665114 - RMER20B LTR ERVK -277 350 101 8 1584 985 103 0 0 chr4 130965321 130965457 -24664663 + B1_Mus1 SINE Alu 1 136 -12 8 1584 828 30 0 0 chr4 130965457 130965556 -24664564 + (GAA)n Simple_repeat Simple_repeat 2 100 0 8 1584 324 0 0 0 chr4 130966383 130966419 -24663701 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1584 300 326 93 24 chr4 130968273 130968471 -24661649 - MIR3 SINE MIR -35 233 11 8 1584 194 347 84 45 chr4 130968729 130968883 -24661237 - MIRb SINE MIR -73 195 36 8 1584 236 263 121 17 chr4 130970698 130970814 -24659306 - MLT1A1 LTR MaLR -280 128 1 8 1584 1638 179 59 0 chr4 130970929 130971236 -24658884 + MTD LTR MaLR 1 325 -94 8 1584 201 295 33 0 chr4 130972029 130972090 -24658030 + MIR SINE MIR 109 171 -91 8 1584 339 271 64 27 chr4 130973547 130973657 -24656463 - RSINE1 SINE B4 -47 118 5 8 1584 411 21 0 0 chr4 130973988 130974036 -24656084 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1584 228 282 34 34 chr4 130974278 130974366 -24655754 + L1MC2 LINE L1 6244 6331 -13 8 1584 802 197 0 0 chr4 130974386 130974528 -24655592 + B1_Mur1 SINE Alu 1 142 -7 8 1584 496 281 133 11 chr4 130974572 130974752 -24655368 - B3 SINE B2 -14 202 1 8 1584 615 62 0 0 chr4 130974971 130975051 -24655069 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 8 1584 235 333 32 0 chr4 130975144 130975237 -24654883 + L1MD LINE L1 5339 5434 -808 8 1584 441 357 69 40 chr4 130975237 130975514 -24654606 + B4A SINE B4 2 286 -6 8 1584 840 223 18 64 chr4 130975565 130975785 -24654335 + ID_B1 SINE B4 3 212 -12 8 1584 584 304 154 22 chr4 130975996 130976406 -24653714 + L1ME1 LINE L1 2513 2976 -3170 8 1584 300 319 41 146 chr4 130976474 130976816 -24653304 - ORR1E LTR MaLR -2 357 52 8 1584 354 311 166 36 chr4 130976893 130977146 -24652974 + B4A SINE B4 1 286 -6 8 1584 259 212 37 12 chr4 130977166 130977247 -24652873 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 1584 457 180 29 17 chr4 130977258 130977433 -24652687 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1584 401 311 57 33 chr4 130977468 130977834 -24652286 + L1ME1 LINE L1 3073 3447 -2699 8 1584 295 320 0 0 chr4 130977846 130977924 -24652196 - B1_Mus2 SINE Alu -10 137 60 8 1584 423 0 0 0 chr4 130977985 130978032 -24652088 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1584 608 305 203 32 chr4 130978126 130979001 -24651119 + L1MD LINE L1 3650 4674 -1472 8 1584 249 217 6 25 chr4 130979132 130979293 -24650827 + (CAGAGA)n Simple_repeat Simple_repeat 5 162 0 8 1584 348 226 0 0 chr4 130979294 130979449 -24650671 + (CA)n Simple_repeat Simple_repeat 2 156 0 8 1584 289 311 104 47 chr4 130979457 130979929 -24650191 + L1ME1 LINE L1 4823 5321 -825 8 1584 281 361 61 0 chr4 130980169 130980333 -24649787 + L1ME1 LINE L1 5645 5817 -1968 8 1584 525 322 7 7 chr4 130980354 130980507 -24649613 + RSINE1 SINE B4 11 163 -2 8 1584 261 267 163 0 chr4 130980548 130980634 -24649486 + RSINE1 SINE B4 27 126 -39 8 1584 537 282 87 61 chr4 130980670 130980980 -24649140 + L1ME1 LINE L1 5811 6128 -51 8 1584 324 0 0 0 chr4 130981647 130981683 -24648437 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1584 212 170 19 0 chr4 130981855 130981908 -24648212 + CT-rich Low_complexity Low_complexity 1 54 0 8 1584 316 179 0 25 chr4 130982486 130982566 -24647554 + GA-rich Low_complexity Low_complexity 1 78 0 8 1584 201 283 0 0 chr4 130983164 130983217 -24646903 + C-rich Low_complexity Low_complexity 1 53 0 8 1584 234 0 0 0 chr4 130986913 130986939 -24643181 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1584 372 250 34 11 chr4 130987280 130987369 -24642751 - LTR41 LTR ERVL -569 199 109 8 1584 185 250 0 0 chr4 130988157 130988197 -24641923 - MIRm SINE MIR -125 151 112 8 1584 186 262 0 0 chr4 130988339 130988381 -24641739 + MIR SINE MIR 116 157 -105 8 1584 225 83 0 0 chr4 130989904 130989940 -24640180 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1584 240 59 0 0 chr4 130990293 130990327 -24639793 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1584 563 245 14 48 chr4 130990827 130990973 -24639147 + RMER15-int LTR ERVL 2295 2435 -2564 8 1584 331 137 0 0 chr4 130991112 130991163 -24638957 + RMER15-int LTR ERVL 4888 4938 -61 8 1584 265 98 0 24 chr4 130991165 130991207 -24638913 - RLTR31_Mur LTR ERVK 0 553 513 8 1584 890 301 49 59 chr4 130991296 130991775 -24638345 - RLTR17 LTR ERVK -126 566 70 8 1584 379 320 32 32 chr4 130992471 130992629 -24637491 - MIR SINE MIR -97 165 8 8 1584 234 254 99 0 chr4 130994341 130994412 -24635708 - MIRc SINE MIR -84 184 107 8 1584 245 276 40 0 chr4 130995239 130995315 -24634805 + MIRm SINE MIR 72 150 -126 8 1584 346 323 25 20 chr4 130995836 130996032 -24634088 - L1M5 LINE L1 -517 5723 5527 8 1584 723 243 104 35 chr4 130996143 130996403 -24633717 - B4 SINE B4 -14 278 1 8 1584 380 320 92 27 chr4 130996500 130996902 -24633218 - L1M5 LINE L1 -794 5352 4925 8 1584 216 330 98 11 chr4 130997487 130997579 -24632541 + B4 SINE B4 4 103 -189 8 1584 346 231 65 11 chr4 130997613 130997705 -24632415 + B4 SINE B4 196 292 0 8 1584 422 281 4 0 chr4 130997713 130997980 -24632140 + (CA)n Simple_repeat Simple_repeat 1 268 0 8 1584 501 250 44 0 chr4 130998120 130998256 -24631864 - RSINE1 SINE B4 -19 146 5 8 1584 368 215 25 0 chr4 130998545 130998624 -24631496 - ID4_ SINE ID -1 82 2 8 1584 2438 138 144 5 chr4 130999507 130999950 -24630170 + RLTR20D LTR ERVK 1 505 -63 8 1584 407 325 99 36 chr4 131000123 131000328 -24629792 + MER45B DNA Tip100 50 271 -769 1 1584 836 261 67 93 chr4 131000328 131000716 -24629404 + MTE2a LTR MaLR 2 379 0 2 1584 407 325 99 36 chr4 131000716 131000762 -24629358 + MER45B DNA Tip100 272 317 -723 1 1584 747 302 59 52 chr4 131000785 131001193 -24628927 + L1MB3 LINE L1 5478 5888 -295 3 1584 1915 134 142 3 chr4 131001258 131001602 -24628518 - ORR1B1 LTR MaLR -1 393 2 4 1584 2322 76 31 0 chr4 131001615 131001932 -24628188 + ORR1A2 LTR MaLR 1 327 0 5 1584 271 257 29 0 chr4 131001973 131002043 -24628077 - ID4 SINE ID 0 83 12 6 1584 334 254 13 10 chr4 131002054 131002165 -24627955 - B1F SINE Alu -5 144 1 7 1584 439 358 108 0 chr4 131002338 131002634 -24627486 + MER45B DNA Tip100 303 630 -410 1 1584 483 246 0 0 chr4 131002639 131002753 -24627367 + PB1D9 SINE Alu 4 117 -3 8 1584 1960 132 91 0 chr4 131002781 131003121 -24626999 - ORR1B1 LTR MaLR -23 371 1 9 1584 255 348 80 25 chr4 131003127 131003289 -24626831 + MER45B DNA Tip100 628 798 -242 1 1584 831 157 83 17 chr4 131003290 131003471 -24626649 + B2_Mm2 SINE B2 1 193 -2 1 1584 687 317 18 89 chr4 131003677 131004127 -24625993 + L1MC LINE L1 3711 4128 -2018 1 1584 508 348 31 28 chr4 131004230 131004555 -24625565 + L1MC LINE L1 4166 4491 -1655 1 1584 458 318 124 13 chr4 131004561 131004867 -24625253 + L1MEc LINE L1 1041 1380 -5020 1 1584 920 151 6 0 chr4 131004869 131005048 -24625072 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1584 883 196 16 32 chr4 131005254 131005439 -24624681 + B3A SINE B2 2 183 -15 1 1584 285 291 97 19 chr4 131005669 131005733 -24624387 + L1MEc LINE L1 4656 4728 -1591 1 1584 1562 191 49 33 chr4 131005733 131006101 -24624019 + ORR1D1 LTR MaLR 1 374 0 1 1584 285 291 97 19 chr4 131006101 131006190 -24623930 + L1MEc LINE L1 4729 4821 -1498 1 1584 366 204 30 30 chr4 131006267 131006368 -24623752 + ORR1B1 LTR MaLR 41 141 -253 1 1584 1719 125 42 23 chr4 131006478 131006883 -24623237 + ORR1A4 LTR MaLR 1 394 0 1 1584 703 256 91 0 chr4 131006893 131007092 -24623028 - MT2A LTR ERVL -7 526 310 1 1584 276 137 0 38 chr4 131007086 131007139 -24622981 - URR1B DNA MER1_type -6 219 169 1 1584 345 225 12 48 chr4 131008639 131008723 -24621397 + ID2 SINE ID 1 81 -2 2 1584 271 291 324 16 chr4 131008987 131009302 -24620818 - MLT1E1A LTR MaLR -21 659 135 2 1584 276 343 86 14 chr4 131009304 131009443 -24620677 - RSINE1 SINE B4 -15 150 2 2 1584 34 0 0 0 chr4 131009462 131009496 -24620624 + AT_rich Low_complexity Low_complexity 1 34 0 2 1584 857 147 0 9 chr4 131009743 131009978 -24620142 + (TG)n Simple_repeat Simple_repeat 1 232 0 2 1584 186 103 0 0 chr4 131009997 131010026 -24620094 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1584 505 282 75 19 chr4 131010029 131010188 -24619932 - B4A SINE B4 -1 291 124 2 1584 832 347 74 45 chr4 131010249 131010656 -24619464 - L1M5 LINE L1 -2418 3728 3295 2 1584 575 207 0 17 chr4 131010656 131010774 -24619346 + PB1D7 SINE Alu 5 120 0 2 1584 832 347 74 45 chr4 131010774 131011369 -24618751 - L1M5 LINE L1 -2852 3294 2697 2 1584 203 0 0 36 chr4 131011960 131011988 -24618132 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1584 513 245 13 45 chr4 131011999 131012153 -24617967 + B1F1 SINE Alu 1 149 0 2 1584 688 216 23 12 chr4 131012526 131012699 -24617421 - ID_B1 SINE B4 -48 176 2 3 1584 308 237 20 40 chr4 131014027 131014128 -24615992 - RMER5 LTR ERV1 -434 100 2 3 1584 479 233 195 31 chr4 131014209 131014251 -24615869 - RMER15 LTR ERVL -12 563 524 3 1584 270 0 0 0 chr4 131014251 131014281 -24615839 + (CAA)n Simple_repeat Simple_repeat 3 32 0 3 1584 479 233 195 31 chr4 131014281 131014464 -24615656 - RMER15 LTR ERVL -52 523 301 3 1584 222 37 0 0 chr4 131015695 131015722 -24614398 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1584 749 218 104 47 chr4 131016677 131016889 -24613231 + ID_B1 SINE B4 1 224 0 3 1584 611 169 0 8 chr4 131016898 131017023 -24613097 + GA-rich Low_complexity Low_complexity 1 124 0 3 1584 288 267 91 48 chr4 131017175 131017398 -24612722 - MIR SINE MIR -1 267 23 3 1584 242 321 26 35 chr4 131017428 131017544 -24612576 + L2b LINE L2 3234 3348 -39 3 1584 214 288 9 43 chr4 131017633 131017749 -24612371 + CT-rich Low_complexity Low_complexity 6 117 0 3 1584 207 0 0 0 chr4 131018718 131018741 -24611379 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1584 275 319 217 5 chr4 131019179 131019396 -24610724 + MER70B LTR ERVL 9 271 -307 4 1584 289 221 12 38 chr4 131019614 131019694 -24610426 - ORR1D1 LTR MaLR 0 374 297 4 1584 207 0 0 0 chr4 131019729 131019752 -24610368 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1584 540 111 0 0 chr4 131019753 131019834 -24610286 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1584 1549 194 62 6 chr4 131019841 131020163 -24609957 - MTD LTR MaLR -68 351 12 4 1584 897 286 41 48 chr4 131020326 131020354 -24609766 + B4A SINE B4 1 29 -263 4 1584 1685 164 34 120 chr4 131020354 131020770 -24609350 - ORR1C2 LTR MaLR -4 380 1 4 1584 4976 224 43 37 chr4 131020775 131022138 -24607982 - ORR1B2-int LTR MaLR 0 1370 1 4 1584 1637 177 29 73 chr4 131022138 131022522 -24607598 - ORR1B2 LTR MaLR 0 367 1 4 1584 897 286 41 48 chr4 131022522 131022776 -24607344 + B4A SINE B4 32 287 -5 4 1584 359 252 56 48 chr4 131023163 131023288 -24606832 + L1MCb LINE L1 1234 1365 -5057 4 1584 663 48 0 0 chr4 131023288 131023371 -24606749 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 5 1584 359 272 214 28 chr4 131023371 131023447 -24606673 + L1MCb LINE L1 1366 1457 -4965 4 1584 501 280 8 0 chr4 131023469 131023587 -24606533 + B3A SINE B2 80 198 0 5 1584 337 301 76 34 chr4 131023638 131023875 -24606245 + L1MCb LINE L1 2141 2387 -4650 4 1584 2075 176 57 15 chr4 131023915 131024319 -24605801 + MTC LTR MaLR 1 421 0 5 1584 390 305 22 37 chr4 131024333 131024469 -24605651 + RSINE1 SINE B4 3 136 -29 5 1584 342 326 55 58 chr4 131024479 131024863 -24605257 + L1MCb LINE L1 2394 2776 -4352 4 1584 244 250 113 10 chr4 131025203 131025300 -24604820 + L1MCb LINE L1 3208 3314 -3627 4 1584 1134 203 142 13 chr4 131025320 131025630 -24604490 - ORR1D1 LTR MaLR 0 374 25 5 1584 317 194 0 82 chr4 131026073 131026269 -24603851 + (CCA)n Simple_repeat Simple_repeat 1 180 0 5 1584 376 344 95 57 chr4 131026504 131026811 -24603309 + L1ME1 LINE L1 5815 6139 -40 5 1584 1300 43 26 32 chr4 131026811 131027001 -24603119 - B2_Mm2 SINE B2 -6 189 1 5 1584 376 344 95 57 chr4 131027001 131027042 -24603078 + L1ME1 LINE L1 6140 6176 -3 5 1584 1159 298 27 13 chr4 131027108 131027482 -24602638 + MTEa LTR MaLR 1 379 0 5 1584 1691 298 76 7 chr4 131027653 131028234 -24601886 - ERVL-int LTR ERVL -2753 3004 2384 5 1584 1534 312 109 32 chr4 131028267 131028419 -24601701 - ERVL-int LTR ERVL -3475 2239 2085 5 1584 3180 52 10 2 chr4 131028419 131028823 -24601297 + MTB_Mm LTR MaLR 1 407 0 6 1584 1534 312 109 32 chr4 131028823 131029529 -24600591 - ERVL-int LTR ERVL -3630 2084 1310 5 1584 1579 226 18 58 chr4 131029529 131029924 -24600196 - MTE2b LTR MaLR 0 379 1 6 1584 1534 279 395 28 chr4 131029924 131030065 -24600055 - ERVL-int LTR ERVL -4405 1309 1120 5 1584 1468 183 86 11 chr4 131030065 131030245 -24599875 - ORR1D1 LTR MaLR 0 374 178 6 1584 396 0 0 0 chr4 131030245 131030289 -24599831 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1584 459 0 0 0 chr4 131030289 131030339 -24599781 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1584 1468 183 86 11 chr4 131030339 131030505 -24599615 - ORR1D1 LTR MaLR -197 177 2 6 1584 793 279 50 33 chr4 131030505 131030805 -24599315 - ERVL-int LTR ERVL -4574 1187 868 5 1584 1120 301 38 24 chr4 131030825 131031348 -24598772 - ERVL-int LTR ERVL -4995 719 193 5 1584 718 229 86 0 chr4 131031420 131031595 -24598525 + ID_B1 SINE B4 2 191 -33 6 1584 204 67 0 0 chr4 131031605 131031635 -24598485 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1584 847 152 91 9 chr4 131032070 131032254 -24597866 - RMER19B LTR ERVK -348 554 357 6 1584 596 309 46 5 chr4 131032417 131032612 -24597508 + MER115 DNA Tip100 489 691 -2 6 1584 267 227 99 33 chr4 131032950 131033041 -24597079 - MIRb SINE MIR -81 187 91 6 1584 401 286 93 30 chr4 131035293 131035480 -24594640 + MLT1L LTR MaLR 262 520 -90 7 1584 365 219 0 8 chr4 131035503 131035623 -24594497 + (CA)n Simple_repeat Simple_repeat 1 119 0 7 1584 734 271 122 69 chr4 131035810 131036202 -24593918 - RLTR26 LTR ERVK -225 417 5 7 1584 801 88 7 14 chr4 131036202 131036341 -24593779 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 1584 530 203 110 0 chr4 131037401 131037519 -24592601 + B1_Mur2 SINE Alu 3 133 -16 7 1584 225 0 0 0 chr4 131037522 131037547 -24592573 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 1584 237 205 167 12 chr4 131039428 131039512 -24590608 + MTE2a LTR MaLR 1 97 -282 7 1584 223 264 40 40 chr4 131039600 131039675 -24590445 + B4A SINE B4 90 164 -128 7 1584 456 182 80 0 chr4 131039609 131039697 -24590423 + PB1D10 SINE Alu 11 105 -12 7 1584 194 162 0 0 chr4 131041488 131041525 -24588595 - L2c LINE L2 -231 3156 3120 7 1584 467 238 7 0 chr4 131041731 131041882 -24588238 + (TG)n Simple_repeat Simple_repeat 2 153 0 8 1584 288 314 113 14 chr4 131044689 131044831 -24585289 + MIRb SINE MIR 34 189 -79 8 1584 656 256 61 40 chr4 131045812 131046040 -24584080 - ORSL-2a DNA Tip100 -93 249 17 8 1584 794 208 122 0 chr4 131046995 131047192 -24582928 - URR1A DNA MER1_type -4 222 2 8 1584 241 345 151 0 chr4 131047286 131047425 -24582695 - MIRc SINE MIR -72 196 37 8 1584 326 277 112 42 chr4 131047561 131047821 -24582299 - RMER12 LTR ERVK -291 1031 754 8 1584 422 341 6 38 chr4 131048282 131048465 -24581655 + G-rich Low_complexity Low_complexity 2 178 0 8 1584 290 283 18 45 chr4 131048841 131048868 -24581252 + L2a LINE L2 3031 3054 -372 8 1584 279 0 0 0 chr4 131048868 131048899 -24581221 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 8 1584 290 283 18 45 chr4 131048899 131048982 -24581138 + L2a LINE L2 3055 3138 -288 8 1584 232 318 0 0 chr4 131049124 131049187 -24580933 + L2a LINE L2 3324 3386 -1 8 1584 433 244 104 43 chr4 131049981 131050144 -24579976 + MTEb LTR MaLR 201 373 -6 8 1584 405 248 19 0 chr4 131050723 131050828 -24579292 - Zaphod DNA Tip100 -27 4004 3898 9 1584 204 122 0 0 chr4 131052107 131052148 -24577972 + (TGGGGG)n Simple_repeat Simple_repeat 1 41 0 9 1584 359 344 40 0 chr4 131052486 131052637 -24577483 - MIRc SINE MIR -74 194 38 9 1584 1334 297 108 94 chr4 131053471 131054860 -24575260 + L1MC3 LINE L1 5545 6953 -832 9 1584 531 142 25 0 chr4 131054991 131055111 -24575009 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 9 1584 356 264 96 50 chr4 131055111 131055350 -24574770 - RLTR21 LTR ERVK -245 1327 1078 9 1584 533 156 0 18 chr4 131055366 131055477 -24574643 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 9 1584 803 306 76 17 chr4 131055663 131056082 -24574038 - L1MEc LINE L1 -3020 3299 2856 9 1584 746 282 67 5 chr4 131056141 131056365 -24573755 + MTE2b LTR MaLR 1 238 -141 9 1584 273 221 0 0 chr4 131056373 131056441 -24573679 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 9 1584 500 242 30 30 chr4 131056493 131056625 -24573495 + MTE2b LTR MaLR 230 361 -18 9 1584 276 284 0 0 chr4 131056650 131056731 -24573389 - L1MEc LINE L1 -3567 2752 2672 9 1584 455 303 6 13 chr4 131056874 131057031 -24573089 - L1MEc LINE L1 -5588 812 657 9 1584 509 306 106 0 chr4 131057045 131057310 -24572810 - L1MEc LINE L1 -5993 407 115 9 1584 600 226 75 21 chr4 131057615 131057853 -24572267 + MTE2a LTR MaLR 29 298 -81 1 1584 805 229 214 9 chr4 131057853 131058127 -24571993 - ORR1D2 LTR MaLR 0 370 2 1 1584 244 286 14 0 chr4 131058134 131058204 -24571916 + MTE2a LTR MaLR 309 379 0 1 1584 191 314 43 0 chr4 131058300 131058370 -24571750 - MIR SINE MIR -62 146 74 1 1584 319 272 369 65 chr4 131058724 131058893 -24571227 + B4A SINE B4 1 218 -74 1 1584 4369 107 22 0 chr4 131058893 131059539 -24570581 + Lx4A LINE L1 6399 7058 0 1 1584 319 236 10 144 chr4 131059539 131059572 -24570548 + B4A SINE B4 219 250 -42 1 1584 483 130 0 0 chr4 131059608 131059685 -24570435 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1584 429 296 0 0 chr4 131059705 131059877 -24570243 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 1 1584 772 65 9 9 chr4 131061070 131061179 -24568941 - MTC LTR MaLR -11 385 277 1 1584 1803 138 109 3 chr4 131061179 131061499 -24568621 + ORR1B2 LTR MaLR 14 367 0 1 1584 1696 136 52 33 chr4 131061499 131061798 -24568322 - MTC LTR MaLR -116 305 1 1 1584 278 277 46 46 chr4 131062004 131062091 -24568029 + RSINE1 SINE B4 79 165 0 1 1584 180 111 0 0 chr4 131062091 131062118 -24568002 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1584 192 296 101 9 chr4 131062519 131062628 -24567492 - MIR SINE MIR -71 137 19 1 1584 895 233 67 0 chr4 131062888 131063111 -24567009 + B4A SINE B4 49 286 -6 1 1584 280 341 7 55 chr4 131064522 131064668 -24565452 - MIRb SINE MIR -92 176 38 1 1584 198 0 0 0 chr4 131067098 131067120 -24563000 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1584 583 73 0 61 chr4 131067125 131067257 -24562863 + (TTGG)n Simple_repeat Simple_repeat 2 125 0 1 1584 384 225 0 53 chr4 131067257 131067351 -24562769 - B4 SINE B4 -203 89 1 1 1584 361 276 121 53 chr4 131067574 131067882 -24562238 - MERVL-int LTR ERVL -1137 4624 4192 1 1584 284 291 63 26 chr4 131068081 131068221 -24561899 - MIR SINE MIR -90 172 19 1 1584 377 266 10 21 chr4 131069545 131069641 -24560479 - MIRb SINE MIR -75 193 99 1 1584 351 0 0 0 chr4 131071793 131071832 -24558288 + (TCC)n Simple_repeat Simple_repeat 2 40 0 1 1585 321 47 0 0 chr4 131072403 131072446 -24557674 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1585 829 195 0 13 chr4 131073477 131073628 -24556492 + B1_Mur1 SINE Alu 1 149 0 1 1585 247 229 56 28 chr4 131073660 131073732 -24556388 + B4 SINE B4 26 99 -193 1 1585 530 259 0 114 chr4 131073736 131073957 -24556163 + B3A SINE B2 10 203 -13 1 1585 747 206 0 0 chr4 131073993 131074173 -24555947 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1585 552 316 62 17 chr4 131074176 131074417 -24555703 + B4 SINE B4 39 290 -2 1 1585 3396 23 0 0 chr4 131075672 131076068 -24554052 + MTA_Mm LTR MaLR 1 396 0 1 1585 414 0 0 0 chr4 131077179 131077225 -24552895 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1585 402 250 12 6 chr4 131077653 131077822 -24552298 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 1585 399 274 0 10 chr4 131078523 131078626 -24551494 + MTEa LTR MaLR 3 104 -275 1 1585 405 0 0 0 chr4 131078635 131078680 -24551440 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1585 228 380 48 30 chr4 131080111 131080279 -24549841 + MIR SINE MIR 18 188 -74 1 1585 241 333 27 0 chr4 131080355 131080466 -24549654 - L1MA10 LINE L1 -10 6324 6211 1 1585 474 101 0 0 chr4 131080522 131080591 -24549529 + (CGTG)n Simple_repeat Simple_repeat 1 69 0 1 1585 1117 273 21 18 chr4 131080593 131080873 -24549247 - B4A SINE B4 -10 282 2 1 1585 368 315 7 20 chr4 131080879 131081028 -24549092 - L1ME1 LINE L1 -214 5965 5819 1 1585 1263 89 0 0 chr4 131081029 131081208 -24548912 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1585 378 305 63 41 chr4 131081390 131081594 -24548526 - L1M5 LINE L1 -3189 2957 2757 1 1585 1168 291 62 3 chr4 131082369 131082676 -24547444 - MTE2b LTR MaLR -54 325 1 1 1585 237 296 43 43 chr4 131083657 131083798 -24546322 + L1MEc LINE L1 1791 1931 -4469 1 1585 421 303 21 26 chr4 131083866 131084056 -24546064 + L1MEc LINE L1 2064 2252 -4148 1 1585 360 57 0 19 chr4 131084336 131084390 -24545730 - HAL1-3A_ME LINE L1 -830 2028 1976 1 1585 429 229 0 0 chr4 131084390 131084547 -24545573 + (TG)n Simple_repeat Simple_repeat 1 157 0 1 1585 225 0 0 0 chr4 131084674 131084699 -24545421 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1585 454 254 38 15 chr4 131084699 131084831 -24545289 - B4 SINE B4 -76 216 82 1 1585 189 0 0 0 chr4 131084977 131084998 -24545122 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1585 387 0 0 0 chr4 131084998 131085041 -24545079 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1585 210 331 91 40 chr4 131085223 131085475 -24544645 - L2c LINE L2 -2 3385 3121 1 1585 269 215 0 71 chr4 131085475 131085545 -24544575 - MTC LTR MaLR -333 88 24 1 1585 2365 163 70 23 chr4 131085542 131086014 -24544106 + RMER5 LTR ERV1 22 515 -19 1 1585 450 0 0 0 chr4 131086014 131086064 -24544056 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1585 405 0 0 0 chr4 131086656 131086701 -24543419 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1585 352 228 0 39 chr4 131087552 131087680 -24542440 - RMER17A LTR ERVK -276 475 353 1 1585 732 61 0 0 chr4 131087680 131087778 -24542342 + (GAA)n Simple_repeat Simple_repeat 3 100 0 1 1585 952 302 13 60 chr4 131087883 131088182 -24541938 - B4A SINE B4 0 292 8 1 1585 244 235 60 121 chr4 131088452 131088568 -24541552 + RMER15 LTR ERVL 1 109 -466 1 1585 269 316 60 26 chr4 131088774 131088891 -24541229 + RMER15 LTR ERVL 452 572 -3 1 1585 483 18 0 0 chr4 131089870 131089926 -24540194 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1585 991 54 39 14 chr4 131090142 131090348 -24539772 + (TGGA)n Simple_repeat Simple_repeat 1 211 0 1 1585 822 57 31 49 chr4 131090380 131090604 -24539516 + (TGGA)n Simple_repeat Simple_repeat 1 219 0 1 1585 183 231 57 71 chr4 131090658 131090728 -24539392 - L3 LINE CR1 -3632 857 789 1 1585 303 353 52 0 chr4 131091051 131091187 -24538933 + ORR1E LTR MaLR 1 143 -216 1 1585 1060 125 71 19 chr4 131092731 131092943 -24537177 - URR1A DNA MER1_type -2 224 2 1 1585 1263 70 26 36 chr4 131093009 131093170 -24536950 + B2_Mm2 SINE B2 2 161 -34 1 1585 252 0 0 0 chr4 131093170 131093198 -24536922 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1585 1263 70 26 36 chr4 131093198 131093228 -24536892 + B2_Mm2 SINE B2 162 191 -4 1 1585 610 250 4 181 chr4 131093734 131093983 -24536137 - MTEa LTR MaLR 0 379 175 1 1585 353 276 38 41 chr4 131094125 131094304 -24535816 + MIRb SINE MIR 15 197 -71 1 1585 192 289 98 49 chr4 131094551 131094653 -24535467 + MIRc SINE MIR 55 161 -107 1 1585 209 186 23 0 chr4 131095821 131095864 -24534256 + MIRm SINE MIR 209 252 -24 1 1585 426 94 0 0 chr4 131095976 131096040 -24534080 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1585 371 250 76 0 chr4 131096059 131096151 -24533969 + RMER30 DNA MER1_type 103 201 -1 1 1585 435 278 0 0 chr4 131096773 131097112 -24533008 + (TG)n Simple_repeat Simple_repeat 1 339 0 1 1585 204 283 0 0 chr4 131097134 131097180 -24532940 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1585 549 265 80 29 chr4 131097191 131097467 -24532653 - B4 SINE B4 0 292 3 1 1585 1348 256 19 50 chr4 131097681 131098105 -24532015 - MTD LTR MaLR -7 412 2 1 1585 458 223 52 37 chr4 131098379 131098514 -24531606 - B1F SINE Alu -11 138 2 1 1585 1108 155 82 5 chr4 131098864 131099071 -24531049 - URR1B DNA MER1_type 0 225 3 1 1585 372 191 0 0 chr4 131099172 131099256 -24530864 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1585 486 178 20 33 chr4 131099662 131099813 -24530307 + CT-rich Low_complexity Low_complexity 2 150 0 1 1585 2241 133 51 3 chr4 131101380 131101772 -24528348 - MTC LTR MaLR -9 412 2 1 1585 603 228 0 16 chr4 131102030 131102213 -24527907 + CT-rich Low_complexity Low_complexity 1 180 0 1 1585 666 171 6 33 chr4 131102231 131102412 -24527708 + CT-rich Low_complexity Low_complexity 2 177 0 1 1585 273 325 0 4 chr4 131102412 131102508 -24527612 - ID4_ SINE ID -56 96 2 1 1585 254 261 86 20 chr4 131103481 131103634 -24526486 - MIRc SINE MIR -102 174 5 1 1585 878 257 98 4 chr4 131104249 131104515 -24525605 - B4 SINE B4 0 292 2 1 1585 879 10 0 0 chr4 131104972 131105072 -24525048 + (TTC)n Simple_repeat Simple_repeat 3 102 0 1 1585 235 325 64 16 chr4 131105150 131105275 -24524845 + MLT1L LTR MaLR 480 610 0 1 1585 349 346 38 38 chr4 131107321 131107534 -24522586 - RMER15 LTR ERVL -40 535 323 1 1585 419 265 88 0 chr4 131108377 131108479 -24521641 + MTE2b LTR MaLR 67 177 -202 1 1585 532 302 111 52 chr4 131109375 131109866 -24520254 + L1M4 LINE L1 4372 4887 -1259 1 1585 300 312 35 17 chr4 131109887 131110060 -24520060 + L1MD LINE L1 4993 5168 -978 1 1585 269 194 97 0 chr4 131110070 131110142 -24519978 + ID4 SINE ID 1 79 -4 1 1585 401 221 47 0 chr4 131110143 131110229 -24519891 + MTEa LTR MaLR 3 92 -287 1 1585 923 277 72 4 chr4 131110647 131110883 -24519237 + MTEa LTR MaLR 67 318 -61 1 1585 942 255 24 112 chr4 131110883 131111214 -24518906 + MTE2a LTR MaLR 1 302 -77 1 1585 230 233 50 0 chr4 131111267 131111327 -24518793 + MTE2a LTR MaLR 315 377 -2 1 1585 629 214 0 8 chr4 131111411 131111543 -24518577 + Lx9 LINE L1 7304 7434 -210 1 1585 283 136 171 19 chr4 131111558 131111663 -24518457 + Lx9 LINE L1 7521 7641 -3 1 1585 696 229 140 5 chr4 131111936 131112129 -24517991 - ID_B1 SINE B4 -3 221 3 1 1585 226 329 92 12 chr4 131112131 131112294 -24517826 + L1M4 LINE L1 5578 5753 -421 1 1585 2220 168 5 11 chr4 131112317 131112697 -24517423 - ORR1C1 LTR MaLR 0 378 1 1 1585 1973 293 64 75 chr4 131113212 131113720 -24516400 + L1MC LINE L1 3859 4365 -1781 1 1585 408 118 0 0 chr4 131113720 131113788 -24516332 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1585 1973 293 64 75 chr4 131113788 131114550 -24515570 + L1MC LINE L1 4366 5114 -1032 1 1585 735 175 0 0 chr4 131114751 131114871 -24515249 + PB1D9 SINE Alu 1 120 0 1 1585 261 250 0 68 chr4 131114894 131114997 -24515123 + L1M4 LINE L1 5209 5304 -842 1 1585 540 305 0 0 chr4 131115056 131115207 -24514913 - RSINE1 SINE B4 -14 151 1 1 1585 204 83 56 0 chr4 131115278 131115314 -24514806 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1585 858 181 0 7 chr4 131115441 131115591 -24514529 + B1_Mur2 SINE Alu 1 149 0 1 1585 387 219 49 66 chr4 131115607 131115729 -24514391 + RMER15 LTR ERVL 39 158 -417 2 1585 1271 176 132 25 chr4 131115729 131116009 -24514111 + RMER15 LTR ERVL 266 575 0 2 1585 324 273 5 2 chr4 131116019 131116125 -24513995 + L1MC LINE L1 5641 5747 -597 1 1585 2026 150 47 67 chr4 131116295 131116745 -24513375 - RMER10A LTR ERVL -1 441 1 2 1585 223 286 0 71 chr4 131117353 131117466 -24512654 + L2b LINE L2 2977 3081 -294 2 1585 841 242 19 19 chr4 131117583 131117798 -24512322 + ID_B1 SINE B4 2 216 -8 2 1585 671 201 6 0 chr4 131119306 131119465 -24510655 + GA-rich Low_complexity Low_complexity 3 162 0 2 1585 204 364 0 0 chr4 131119620 131119697 -24510423 + CT-rich Low_complexity Low_complexity 4 80 0 2 1585 368 338 97 64 chr4 131120347 131120768 -24509352 - L1MC4a LINE L1 -1916 5966 5532 2 1585 335 310 83 33 chr4 131122277 131122457 -24507663 + MIR3 SINE MIR 13 201 -7 2 1585 1272 81 0 0 chr4 131122724 131122898 -24507222 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 2 1585 2956 238 114 20 chr4 131122939 131123044 -24507076 - Lx8 LINE L1 -325 7148 7034 2 1585 333 0 0 0 chr4 131123044 131123081 -24507039 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1585 2956 238 114 20 chr4 131123081 131123826 -24506294 - Lx8 LINE L1 -440 7033 6208 2 1585 2098 126 75 3 chr4 131123826 131124161 -24505959 + RLTR15 LTR ERVK 1 359 0 2 1585 2956 238 114 20 chr4 131124161 131124196 -24505924 - Lx8 LINE L1 -1266 6207 6180 2 1585 220 207 72 20 chr4 131124196 131124349 -24505771 + (TA)n Simple_repeat Simple_repeat 1 161 0 2 1585 216 24 73 0 chr4 131125437 131125478 -24504642 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1585 180 271 0 0 chr4 131127133 131127181 -24502939 + MER5A DNA MER1_type 16 63 -126 2 1585 216 319 58 0 chr4 131129410 131129479 -24500641 - MIRb SINE MIR -34 234 162 2 1585 1071 278 162 8 chr4 131129479 131129842 -24500278 + MTD LTR MaLR 1 419 0 2 1585 195 219 159 0 chr4 131129842 131129905 -24500215 - MIRc SINE MIR -104 172 94 2 1585 203 287 19 105 chr4 131129983 131130088 -24500032 - L3 LINE CR1 -112 4377 4282 2 1585 1211 201 172 19 chr4 131130260 131130580 -24499540 + ORR1D1 LTR MaLR 1 369 -5 2 1585 1204 203 0 5 chr4 131130819 131131022 -24499098 - B3 SINE B2 0 216 15 2 1585 296 180 177 16 chr4 131131270 131131332 -24498788 + ID4 SINE ID 3 74 -9 2 1585 554 279 52 41 chr4 131131377 131131571 -24498549 - B3A SINE B2 0 198 3 2 1585 234 224 58 48 chr4 131131591 131131694 -24498426 - L1MC LINE L1 -2102 4044 3941 2 1585 352 342 65 19 chr4 131131731 131131886 -24498234 + MLT1H LTR MaLR 32 193 -356 2 1585 999 351 62 34 chr4 131131907 131132411 -24497709 - MER74B LTR ERVL -31 591 74 2 1585 384 260 80 156 chr4 131132414 131132715 -24497405 + B4A SINE B4 15 292 0 2 1585 564 182 11 6 chr4 131132725 131132902 -24497218 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1585 531 278 52 10 chr4 131132994 131133187 -24496933 - HERVL74-int LTR ERVL -79 5606 5406 2 1585 513 272 29 38 chr4 131133504 131133714 -24496406 - HERVL74-int LTR ERVL -738 4947 4740 2 1585 608 171 29 57 chr4 131133856 131134007 -24496113 - PB1D9 SINE Alu 0 150 11 2 1585 337 210 0 0 chr4 131134055 131134117 -24496003 - HERVL74-int LTR ERVL -1613 4072 4011 2 1585 471 224 114 46 chr4 131134141 131134272 -24495848 + B1F SINE Alu 1 140 -9 2 1585 1027 300 103 45 chr4 131134532 131135132 -24494988 - HERVL74-int LTR ERVL -2419 3266 2632 2 1585 806 329 88 32 chr4 131135405 131135961 -24494159 - HERVL74-int LTR ERVL -3607 2078 1492 2 1585 277 308 0 0 chr4 131135997 131136075 -24494045 - ID4_ SINE ID -1 82 5 2 1585 381 295 32 8 chr4 131136088 131136211 -24493909 - B1F SINE Alu -3 146 21 2 1585 727 97 40 33 chr4 131136913 131137214 -24492906 + (CA)n Simple_repeat Simple_repeat 1 303 0 2 1585 551 145 34 23 chr4 131137225 131137401 -24492719 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1585 875 295 26 88 chr4 131137603 131137908 -24492212 - MTE2a LTR MaLR -14 365 80 2 1585 633 289 42 26 chr4 131137916 131138093 -24492027 + B3A SINE B2 4 181 -17 2 1585 405 39 0 0 chr4 131138093 131138144 -24491976 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1585 633 289 42 26 chr4 131138144 131138158 -24491962 + B3A SINE B2 182 198 0 2 1585 399 259 71 0 chr4 131138174 131138286 -24491834 - MTE2a LTR MaLR -299 120 1 2 1585 335 282 147 41 chr4 131138307 131138525 -24491595 + MLT1H LTR MaLR 259 499 -50 2 1585 378 0 0 0 chr4 131138572 131138614 -24491506 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1585 378 0 0 0 chr4 131138839 131138881 -24491239 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2 1585 224 347 38 68 chr4 131139290 131139423 -24490697 + MIRb SINE MIR 48 176 -92 2 1585 1463 154 107 37 chr4 131139676 131140059 -24490061 - RMER17C LTR ERVK 0 410 1 2 1585 235 234 60 45 chr4 131140069 131140136 -24489984 + ID4_ SINE ID 2 69 -14 2 1585 192 152 0 0 chr4 131140137 131140170 -24489950 + GA-rich Low_complexity Low_complexity 4 36 0 2 1585 261 253 62 12 chr4 131140545 131140625 -24489495 + ORR1E LTR MaLR 1 84 -275 2 1585 249 33 0 0 chr4 131140633 131140663 -24489457 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1585 274 295 104 90 chr4 131142328 131142462 -24487658 + B1F SINE Alu 1 136 -13 2 1585 350 247 12 12 chr4 131142792 131142874 -24487246 + ID4_ SINE ID 2 83 0 2 1585 666 264 30 54 chr4 131142876 131143044 -24487076 + RSINE1 SINE B4 2 165 0 2 1585 549 214 12 12 chr4 131143049 131143219 -24486901 + (CATA)n Simple_repeat Simple_repeat 4 173 0 2 1585 271 302 32 56 chr4 131143221 131143347 -24486773 - YREP_Mm Unknown Unknown -1482 330 208 2 1585 534 254 0 24 chr4 131143238 131143363 -24486757 + ID_B1 SINE B4 86 207 -17 2 1585 1207 111 12 0 chr4 131144185 131144357 -24485763 + B2_Mm1t SINE B2 6 179 -14 2 1585 285 95 308 86 chr4 131144394 131144511 -24485609 + B2_Mm2 SINE B2 46 188 -7 2 1585 237 83 0 0 chr4 131144518 131144554 -24485566 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1585 208 154 19 19 chr4 131144832 131144885 -24485235 + GA-rich Low_complexity Low_complexity 3 55 0 2 1585 1266 78 0 0 chr4 131144891 131145071 -24485049 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1585 483 298 53 0 chr4 131147104 131147255 -24482865 + B3A SINE B2 17 175 -23 2 1585 306 50 0 0 chr4 131147256 131147296 -24482824 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1585 873 211 6 18 chr4 131147357 131147521 -24482599 + RSINE1 SINE B4 4 165 0 2 1585 201 162 27 0 chr4 131147523 131147560 -24482560 + GA-rich Low_complexity Low_complexity 2 39 0 2 1585 213 293 30 0 chr4 131147698 131147797 -24482323 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 2 1585 527 194 36 58 chr4 131148002 131148130 -24481990 - ORR1E LTR MaLR -13 366 242 2 1585 1306 258 48 14 chr4 131148130 131148480 -24481640 + MTD LTR MaLR 3 364 -55 2 1585 2077 161 35 22 chr4 131148480 131148732 -24481388 + RMER19B LTR ERVK 3 266 -636 2 1585 783 0 0 0 chr4 131148732 131148819 -24481301 + (TTC)n Simple_repeat Simple_repeat 2 88 0 2 1585 2077 161 35 22 chr4 131148819 131148833 -24481287 + RMER19B LTR ERVK 267 274 -628 2 1585 3906 59 0 8 chr4 131148833 131149312 -24480808 - L1Md_F2 LINE L1 -14 6568 6094 2 1585 2077 161 35 22 chr4 131149312 131149411 -24480709 + RMER19B LTR ERVK 275 373 -529 2 1585 3750 113 7 15 chr4 131149752 131150293 -24479827 + RMER19B LTR ERVK 366 902 0 2 1585 1313 34 0 0 chr4 131150336 131150484 -24479636 - B1_Mus1 SINE Alu 0 148 1 2 1585 1034 222 39 33 chr4 131150498 131150752 -24479368 - ORR1E LTR MaLR -119 251 1 2 1585 914 235 5 4 chr4 131151464 131151523 -24478597 + Lx8 LINE L1 6967 7017 -456 2 1585 967 117 29 0 chr4 131151523 131151660 -24478460 + B1_Mur4 SINE Alu 1 141 -9 2 1585 914 292 98 84 chr4 131151660 131152104 -24478016 + Lx8 LINE L1 7018 7471 -2 2 1585 219 220 0 0 chr4 131153089 131153139 -24476981 + CT-rich Low_complexity Low_complexity 2 51 0 2 1585 264 312 55 23 chr4 131153181 131153309 -24476811 - B4 SINE B4 -157 135 4 2 1585 1178 296 80 0 chr4 131153462 131153813 -24476307 + MTE2b LTR MaLR 1 379 0 2 1585 397 335 6 6 chr4 131153821 131153989 -24476131 - L1M5 LINE L1 -658 5521 5354 2 1585 501 299 111 62 chr4 131156113 131156466 -24473654 + MLT1I LTR MaLR 42 411 0 2 1585 265 318 139 0 chr4 131157834 131157978 -24472142 - MIRm SINE MIR -94 182 2 2 1585 489 202 8 76 chr4 131158390 131158507 -24471613 - RLTR20C LTR ERVK 0 534 426 2 1585 3432 138 8 15 chr4 131158507 131159043 -24471077 - RLTR20C LTR ERVK -2 532 1 2 1585 218 194 14 27 chr4 131159220 131159294 -24470826 + (TGG)n Simple_repeat Simple_repeat 1 73 0 2 1585 800 143 47 60 chr4 131159305 131159454 -24470666 - B1_Mus1 SINE Alu 0 148 2 2 1585 2070 323 61 86 chr4 131159502 131160599 -24469521 + MTEa-int LTR MaLR 1 1070 -510 2 1585 1145 271 98 14 chr4 131160582 131160966 -24469154 + MTEa-int LTR MaLR 1204 1578 -2 2 1585 434 332 81 48 chr4 131160968 131161177 -24468943 + MTEa LTR MaLR 1 216 -163 2 1585 465 205 0 0 chr4 131161177 131161299 -24468821 + CT-rich Low_complexity Low_complexity 2 123 0 2 1585 1045 96 11 0 chr4 131161300 131161478 -24468642 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1585 310 252 159 49 chr4 131161480 131161645 -24468475 + MTEa LTR MaLR 179 359 0 2 1585 195 328 127 56 chr4 131163275 131163401 -24466719 - MIRm SINE MIR -132 144 10 2 1585 439 198 17 17 chr4 131164499 131164617 -24465503 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 2 1585 216 0 0 0 chr4 131164776 131164800 -24465320 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1585 288 70 0 0 chr4 131164909 131164952 -24465168 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1585 186 268 172 11 chr4 131165009 131165096 -24465024 + MIR SINE MIR 45 145 -63 2 1585 400 329 70 0 chr4 131166137 131166295 -24463825 - MIR SINE MIR -74 188 20 2 1585 2109 266 150 30 chr4 131166553 131167321 -24462799 - RMER13A LTR ERVK 0 860 1 2 1585 1073 199 4 31 chr4 131167405 131167633 -24462487 + URR1B DNA MER1_type 1 222 -3 2 1585 217 268 0 35 chr4 131168243 131168301 -24461819 - L2b LINE L2 -6 3369 3314 2 1585 436 356 26 43 chr4 131168592 131168824 -24461296 + ORR1E LTR MaLR 2 229 -130 2 1585 694 182 108 29 chr4 131168856 131169060 -24461060 + RMER15 LTR ERVL 356 575 0 2 1585 348 259 120 29 chr4 131169063 131169238 -24460882 + L1M2 LINE L1 5335 5525 -766 2 1585 346 260 10 50 chr4 131169242 131169343 -24460777 + B4A SINE B4 2 98 -194 2 1585 639 267 58 19 chr4 131169351 131169557 -24460563 + B3 SINE B2 2 215 -1 2 1585 269 209 15 0 chr4 131169672 131169739 -24460381 + GA-rich Low_complexity Low_complexity 3 70 0 2 1585 712 203 20 7 chr4 131169850 131170147 -24459973 + (CATATA)n Simple_repeat Simple_repeat 1 301 0 2 1585 910 323 52 21 chr4 131170147 131170568 -24459552 + Lx7 LINE L1 5459 5924 -1772 2 1585 29 0 0 0 chr4 131171133 131171162 -24458958 + GC_rich Low_complexity Low_complexity 1 29 0 3 1585 239 290 0 42 chr4 131171348 131171420 -24458700 - MIRc SINE MIR -78 190 122 3 1585 294 270 59 15 chr4 131171836 131171971 -24458149 - MIR3 SINE MIR -7 201 64 3 1585 230 256 0 113 chr4 131171962 131172059 -24458061 - MIRb SINE MIR -98 170 85 3 1585 1330 221 85 9 chr4 131172804 131173120 -24457000 - MTE2a LTR MaLR -39 340 1 3 1585 253 331 22 75 chr4 131173892 131174026 -24456094 + MIRm SINE MIR 55 181 -95 3 1585 735 12 0 0 chr4 131174829 131174913 -24455207 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 1585 794 161 7 0 chr4 131174969 131175124 -24454996 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1585 234 257 186 0 chr4 131175124 131175194 -24454926 - B3A SINE B2 -113 85 3 3 1585 662 251 63 53 chr4 131175229 131175435 -24454685 + B3 SINE B2 3 210 -6 3 1585 1973 219 137 21 chr4 131175854 131176386 -24453734 - RMER19B LTR ERVK 0 902 309 3 1585 462 36 0 0 chr4 131176462 131176518 -24453602 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1585 588 237 30 0 chr4 131176887 131177018 -24453102 + ID_B1 SINE B4 81 215 -9 3 1585 258 302 110 12 chr4 131176906 131177070 -24453050 - YREP_Mm Unknown Unknown -1514 298 119 3 1585 369 0 0 0 chr4 131177100 131177141 -24452979 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1585 281 252 10 0 chr4 131177194 131177297 -24452823 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 1585 180 70 45 23 chr4 131177521 131177565 -24452555 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1585 235 344 93 52 chr4 131177800 131177972 -24452148 + MIRb SINE MIR 44 222 -46 3 1585 1028 208 221 14 chr4 131178077 131178340 -24451780 - ORR1E LTR MaLR -62 317 1 3 1585 234 227 0 0 chr4 131178370 131178414 -24451706 + ID_B1 SINE B4 133 176 -48 3 1585 1104 56 14 0 chr4 131178492 131178636 -24451484 + B1_Mm SINE Alu 2 147 0 3 1585 378 339 51 25 chr4 131178639 131178757 -24451363 + RSINE1 SINE B4 35 155 -10 3 1585 366 23 0 0 chr4 131178764 131178807 -24451313 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1585 537 16 0 0 chr4 131178807 131178868 -24451252 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1585 24 0 0 0 chr4 131178873 131178897 -24451223 + AT_rich Low_complexity Low_complexity 1 24 0 3 1585 1908 142 42 0 chr4 131179363 131179672 -24450448 + ORR1A3 LTR MaLR 1 322 -4 3 1585 1251 85 40 0 chr4 131179686 131179863 -24450257 + B2_Mm2 SINE B2 1 184 -11 3 1585 225 0 0 0 chr4 131179863 131179888 -24450232 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1585 221 191 82 12 chr4 131180490 131180569 -24449551 + MIRc SINE MIR 121 209 -59 3 1585 1442 219 13 57 chr4 131180824 131181211 -24448909 + ORR1D2 LTR MaLR 1 370 0 3 1585 497 312 70 68 chr4 131182629 131183194 -24446926 - L1MEc LINE L1 -3011 3308 2724 3 1585 3834 153 123 75 chr4 131183194 131184055 -24446065 + RMER19B LTR ERVK 1 902 0 3 1585 497 343 66 84 chr4 131184055 131184315 -24445805 - L1MEc LINE L1 -3596 2723 2463 3 1585 436 295 53 39 chr4 131184324 131184513 -24445607 - B3A SINE B2 -3 192 14 3 1585 447 19 0 0 chr4 131184513 131184565 -24445555 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 3 1585 436 261 70 0 chr4 131184565 131184577 -24445543 - B3A SINE B2 -185 13 2 3 1585 369 43 0 0 chr4 131185299 131185346 -24444774 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1585 531 328 25 12 chr4 131185348 131185592 -24444528 - L1MEc LINE L1 -4380 2020 1774 3 1585 450 86 37 0 chr4 131186404 131186485 -24443635 + (TCTCCC)n Simple_repeat Simple_repeat 3 86 0 3 1585 408 305 87 31 chr4 131186737 131186933 -24443187 + MER45B DNA Tip100 697 903 -137 3 1585 180 97 0 0 chr4 131187285 131187316 -24442804 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1585 1039 51 0 0 chr4 131187317 131187455 -24442665 - B1_Mm SINE Alu 0 147 10 3 1585 279 331 39 8 chr4 131187686 131187814 -24442306 - MIRb SINE MIR -66 202 71 3 1585 1357 142 0 4 chr4 131188796 131189022 -24441098 + URR1B DNA MER1_type 1 225 0 3 1585 788 197 138 10 chr4 131189337 131189532 -24440588 - ID_B1 SINE B4 0 224 5 3 1585 1154 90 0 6 chr4 131190053 131190232 -24439888 + (GGA)n Simple_repeat Simple_repeat 1 178 0 3 1585 1220 56 72 6 chr4 131190564 131190744 -24439376 - B2_Mm2 SINE B2 -3 192 1 3 1585 1277 224 127 18 chr4 131190839 131191171 -24438949 - MTE2b LTR MaLR 0 379 12 3 1585 288 248 83 30 chr4 131191254 131191387 -24438733 - MIR3 SINE MIR -63 145 6 3 1585 318 170 0 0 chr4 131192166 131192219 -24437901 + RSINE1 SINE B4 2 54 -111 3 1585 747 0 0 0 chr4 131192219 131192302 -24437818 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1585 2879 47 52 16 chr4 131192542 131192928 -24437192 - MTB LTR MaLR 0 400 1 3 1585 247 252 71 95 chr4 131193050 131193234 -24436886 - MIRm SINE MIR -93 183 3 3 1585 245 216 20 0 chr4 131193314 131193365 -24436755 - MER113A DNA MER1_type -135 179 128 3 1585 206 307 26 13 chr4 131193544 131193620 -24436500 + GA-rich Low_complexity Low_complexity 6 82 0 3 1585 245 166 51 32 chr4 131193702 131193858 -24436262 + CT-rich Low_complexity Low_complexity 4 162 0 3 1585 342 0 0 0 chr4 131194797 131194835 -24435285 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1585 1854 155 53 19 chr4 131194920 131195281 -24434839 + MTB_Mm LTR MaLR 8 380 -27 3 1585 230 291 37 37 chr4 131195590 131195672 -24434448 - Charlie12 DNA MER1_type -2771 102 21 3 1585 505 312 57 74 chr4 131196941 131197185 -24432935 + MLT1C LTR MaLR 16 253 -214 3 1585 3197 45 5 0 chr4 131197185 131197583 -24432537 - MTB LTR MaLR 0 400 1 3 1585 505 312 57 74 chr4 131197583 131197674 -24432446 + MLT1C LTR MaLR 254 345 -122 3 1585 314 275 12 15 chr4 131197782 131197866 -24432254 + MLT1K LTR MaLR 167 266 -329 3 1585 628 348 42 12 chr4 131198380 131198639 -24431481 + Tigger7 DNA MER2_type 32 298 -2193 3 1585 1103 62 7 0 chr4 131198711 131198857 -24431263 - B1_Mus2 SINE Alu 0 147 1 3 1585 1101 315 106 20 chr4 131198881 131199611 -24430509 - L1MDa LINE L1 -4452 2181 1390 3 1585 1033 274 56 25 chr4 131199770 131200129 -24429991 + ORR1D2 LTR MaLR 1 370 0 3 1585 461 314 127 15 chr4 131200547 131200668 -24429452 - MLT1A0 LTR MaLR -5 360 231 3 1585 360 43 0 0 chr4 131200668 131200714 -24429406 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1585 461 314 127 15 chr4 131200714 131200851 -24429269 - MLT1A0 LTR MaLR -135 230 75 3 1585 2220 126 14 11 chr4 131200980 131201333 -24428787 - ORR1B1 LTR MaLR 0 394 41 3 1585 2908 55 53 0 chr4 131201903 131202283 -24427837 + MTB LTR MaLR 1 400 0 3 1585 221 83 28 0 chr4 131202608 131202644 -24427476 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1585 444 249 109 9 chr4 131202705 131202911 -24427209 - B4 SINE B4 -52 240 4 3 198 1634 218 52 3 chr4 131202920 131203288 -24426832 - ORR1B1 LTR MaLR -8 386 1 3 1586 352 309 121 24 chr4 131203978 131204276 -24425844 - L1MA5 LINE L1 -1 6299 5973 3 1586 1820 157 55 16 chr4 131204346 131204574 -24425546 + RMER10B LTR ERVL 1 239 -159 3 1586 195 42 0 0 chr4 131204574 131204598 -24425522 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1586 1820 157 55 16 chr4 131204598 131204732 -24425388 + RMER10B LTR ERVL 240 377 -21 3 1586 1433 193 43 57 chr4 131204696 131205047 -24425073 + ORR1D1 LTR MaLR 29 374 0 3 1586 492 317 39 14 chr4 131205047 131205255 -24424865 - L1MA5 LINE L1 -325 5975 5763 3 1586 267 303 0 48 chr4 131205276 131205380 -24424740 - PB1D10 SINE Alu -1 116 18 3 1586 448 283 192 8 chr4 131205448 131205687 -24424433 + ORR1E LTR MaLR 1 283 -76 3 1586 292 282 43 123 chr4 131205720 131205882 -24424238 - MLT1J LTR MaLR -135 377 229 3 1586 2185 238 41 50 chr4 131205903 131206508 -24423612 + RMER19C LTR ERVK 1 600 -11 3 1586 697 279 90 110 chr4 131206955 131207309 -24422811 + ORR1E LTR MaLR 7 353 -6 3 1586 314 356 103 24 chr4 131207343 131207596 -24422524 - L1ME4a LINE L1 -252 5872 5600 3 1586 512 163 0 42 chr4 131208581 131208596 -24421524 - B1_Mus2 SINE Alu 0 147 136 3 1586 528 16 0 0 chr4 131208596 131208657 -24421463 + (GTTTG)n Simple_repeat Simple_repeat 4 64 0 3 1586 512 163 0 42 chr4 131208657 131208737 -24421383 - B1_Mus2 SINE Alu -12 135 56 3 1586 228 35 0 0 chr4 131208739 131208768 -24421352 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1586 894 287 146 12 chr4 131209284 131209612 -24420508 - MT2A LTR ERVL -82 451 80 3 1586 252 71 48 0 chr4 131209621 131209663 -24420457 + B1_Mur4 SINE Alu 101 144 -6 3 1586 250 265 17 0 chr4 131209668 131209785 -24420335 + G-rich Low_complexity Low_complexity 2 120 0 3 1586 235 295 95 0 chr4 131209822 131209927 -24420193 + L1MB5 LINE L1 4989 5103 -1043 3 1586 204 261 0 0 chr4 131210041 131210106 -24420014 + A-rich Low_complexity Low_complexity 2 66 0 3 1586 1384 192 154 80 chr4 131210121 131210696 -24419424 - RMER19B LTR ERVK -49 853 1 3 1586 462 148 0 36 chr4 131210696 131210780 -24419340 + ORR1B1 LTR MaLR 312 392 -2 3 1586 319 141 27 27 chr4 131210782 131210855 -24419265 + (CATA)n Simple_repeat Simple_repeat 1 73 0 3 1586 341 250 107 46 chr4 131210862 131211042 -24419078 + L1MB5 LINE L1 5713 5903 -271 3 1586 1051 121 28 23 chr4 131211042 131211219 -24418901 - ORR1D1 LTR MaLR 0 374 197 3 1586 429 281 155 11 chr4 131211454 131211641 -24418479 + ID_B1 SINE B4 2 215 -9 3 1586 424 311 62 21 chr4 131211650 131211935 -24418185 + L1ME1 LINE L1 5725 6030 -414 3 1586 415 253 11 0 chr4 131212475 131212570 -24417550 - MTEa LTR MaLR -80 299 204 3 1586 297 254 15 0 chr4 131212643 131212710 -24417410 - MTEa LTR MaLR -311 68 1 3 1586 401 160 31 31 chr4 131212793 131212922 -24417198 + (CAGAGA)n Simple_repeat Simple_repeat 2 130 0 3 1586 2730 203 37 35 chr4 131213058 131213227 -24416893 + RCHARR1 DNA MER1_type 344 512 -462 3 1586 324 0 0 0 chr4 131213227 131213263 -24416857 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1586 378 0 0 0 chr4 131213263 131213304 -24416816 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1586 2730 203 37 35 chr4 131213304 131213762 -24416358 + RCHARR1 DNA MER1_type 513 972 -2 3 1586 216 292 87 81 chr4 131213768 131213917 -24416203 + RSINE1 SINE B4 2 151 -14 3 1586 198 329 25 12 chr4 131214168 131214248 -24415872 + MIR SINE MIR 39 119 -143 3 1586 431 248 36 58 chr4 131215225 131215362 -24414758 + RMER30 DNA MER1_type 69 202 0 4 1586 279 339 16 32 chr4 131216219 131216344 -24413776 + L1MEc LINE L1 141 263 -6137 4 1586 515 191 66 9 chr4 131216474 131216580 -24413540 + B1_Mur1 SINE Alu 9 120 -29 4 1586 365 228 44 30 chr4 131217238 131217374 -24412746 + MIRb SINE MIR 50 178 -30 4 1586 221 213 33 0 chr4 131217546 131217607 -24412513 + T-rich Low_complexity Low_complexity 2 64 0 4 1586 327 250 4 0 chr4 131217749 131217838 -24412282 + MIRc SINE MIR 59 153 -115 4 1586 835 96 28 14 chr4 131219205 131219421 -24410699 + (TGAA)n Simple_repeat Simple_repeat 1 219 0 4 1586 882 190 91 20 chr4 131219824 131220023 -24410097 + B3 SINE B2 1 213 -3 4 1586 218 340 32 0 chr4 131220031 131220125 -24409995 - MIRb SINE MIR -4 264 168 4 1586 199 103 0 0 chr4 131220552 131220581 -24409539 - MIR SINE MIR -65 143 115 4 1586 181 250 0 0 chr4 131220656 131220696 -24409424 - MER5B DNA MER1_type -133 45 6 4 1586 230 315 60 43 chr4 131220697 131220813 -24409307 + MIR3 SINE MIR 39 156 -52 4 1586 3942 160 96 63 chr4 131220828 131221701 -24408419 + RMER19B LTR ERVK 1 902 0 4 1586 3128 263 80 11 chr4 131222329 131223155 -24406965 - RCHARR1 DNA MER1_type -91 883 1 4 1586 1282 34 0 0 chr4 131223374 131223521 -24406599 + B1_Mus2 SINE Alu 1 147 0 4 1586 466 275 51 0 chr4 131223576 131223714 -24406406 + HAL1-2a_MD LINE L1 2348 2492 -532 4 1586 1722 180 34 54 chr4 131225053 131225328 -24404792 - MTD LTR MaLR -2 417 152 4 1586 2419 186 35 5 chr4 131225328 131225761 -24404359 - Lx5 LINE L1 0 7050 6605 4 1586 1722 180 34 54 chr4 131225761 131225837 -24404283 - MTD LTR MaLR -268 151 73 4 1586 189 0 0 0 chr4 131225842 131225863 -24404257 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1586 339 301 83 45 chr4 131226368 131226559 -24403561 - ORR1E LTR MaLR -108 262 74 4 1586 219 246 108 0 chr4 131227305 131227370 -24402750 - MIR SINE MIR -73 189 118 4 1586 393 145 26 13 chr4 131227633 131227710 -24402410 + L5 LINE RTE 2184 2261 -4 4 1586 25 0 0 0 chr4 131228148 131228173 -24401947 + GC_rich Low_complexity Low_complexity 1 25 0 4 1586 1207 165 9 28 chr4 131229427 131229639 -24400481 + MTC LTR MaLR 1 208 -213 4 1586 683 249 152 0 chr4 131229639 131229836 -24400284 + Lx6 LINE L1 7114 7340 -120 4 1586 3323 64 0 2 chr4 131229819 131230249 -24399871 + L1_Mm LINE L1 5157 5586 -297 4 1586 8185 53 0 4 chr4 131230249 131231247 -24398873 + L1Md_F2 LINE L1 5587 6580 -2 4 1586 366 107 0 0 chr4 131231261 131231317 -24398803 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 4 1586 1517 96 0 56 chr4 131231317 131231548 -24398572 + MTC LTR MaLR 196 413 -8 4 1586 723 240 39 39 chr4 131232256 131232438 -24397682 + B3A SINE B2 1 182 -16 4 1586 220 121 14 43 chr4 131232468 131232537 -24397583 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1586 304 214 214 0 chr4 131232685 131232788 -24397332 + MLT1K LTR MaLR 407 531 -64 4 1586 366 270 37 96 chr4 131232914 131233049 -24397071 - RMER10B LTR ERVL 0 398 272 4 1586 275 289 96 0 chr4 131233679 131233762 -24396358 - MIRb SINE MIR -143 125 35 4 1586 871 143 57 0 chr4 131234730 131234870 -24395250 + B1_Mur4 SINE Alu 2 149 -1 4 1586 1197 190 98 4 chr4 131235054 131235318 -24394802 - ORR1D1 LTR MaLR -85 289 1 4 1586 239 203 0 15 chr4 131235367 131235432 -24394688 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1586 828 227 0 89 chr4 131235432 131235506 -24394614 - RSINE1 SINE B4 0 165 101 4 1586 597 76 390 0 chr4 131235506 131235611 -24394509 + B1_Mus2 SINE Alu 1 146 -1 4 1586 828 227 0 89 chr4 131235611 131235715 -24394405 - RSINE1 SINE B4 -65 100 3 4 1586 377 266 149 29 chr4 131235925 131236099 -24394021 - HAL1b LINE L1 -204 1805 1611 4 1586 415 295 7 14 chr4 131236100 131236241 -24393879 + B1F1 SINE Alu 3 142 -7 4 1586 1359 260 45 29 chr4 131236266 131236502 -24393618 + MT2A LTR ERVL 1 229 -304 4 1586 702 24 0 0 chr4 131236502 131236586 -24393534 + (CTG)n Simple_repeat Simple_repeat 1 84 0 4 1586 1359 260 45 29 chr4 131236586 131236726 -24393394 + MT2A LTR ERVL 230 381 -152 4 1586 1207 182 9 32 chr4 131237281 131237502 -24392618 - B3 SINE B2 0 216 1 4 1586 632 290 18 61 chr4 131238016 131238181 -24391939 - RSINE1 SINE B4 -2 163 6 4 1586 546 16 0 0 chr4 131238194 131238257 -24391863 + (GTTTG)n Simple_repeat Simple_repeat 3 65 0 4 1586 309 269 183 8 chr4 131238257 131238377 -24391743 - B4 SINE B4 -78 214 74 4 1586 360 282 35 12 chr4 131239682 131239768 -24390352 - B4 SINE B4 -189 103 16 4 1586 939 122 203 6 chr4 131240055 131240237 -24389883 - URR1A DNA MER1_type -7 219 2 4 1586 395 259 0 0 chr4 131240423 131240504 -24389616 - ID4_ SINE ID -1 82 2 4 1586 285 326 36 22 chr4 131240519 131240657 -24389463 - B1F1 SINE Alu -9 140 1 4 1586 223 175 25 0 chr4 131240959 131240999 -24389121 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1586 339 296 16 65 chr4 131241008 131241131 -24388989 - PB1D10 SINE Alu 0 117 1 4 1586 1882 219 81 11 chr4 131241371 131241827 -24388293 + RMER20A LTR ERVK 29 516 0 4 1586 198 347 126 0 chr4 131242676 131242771 -24387349 + MIRc SINE MIR 38 144 -124 4 1586 480 319 63 89 chr4 131242913 131242969 -24387151 - MLT1H LTR MaLR -172 377 331 4 1586 1100 217 34 173 chr4 131242969 131243409 -24386711 - MTE2a LTR MaLR 0 379 1 4 1586 480 319 63 89 chr4 131243409 131243655 -24386465 - MLT1H LTR MaLR -219 330 83 4 1586 423 276 53 30 chr4 131243844 131243975 -24386145 + MTE2a LTR MaLR 57 190 -189 4 1586 261 0 0 0 chr4 131243977 131244006 -24386114 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1586 583 274 38 25 chr4 131244007 131244164 -24385956 - B3A SINE B2 -38 160 2 4 1586 708 329 71 43 chr4 131246340 131246496 -24383624 + MLT1B LTR MaLR 12 177 -213 4 1586 1058 265 0 0 chr4 131246496 131246715 -24383405 + ID_B1 SINE B4 1 219 -5 4 1586 708 329 71 43 chr4 131246715 131246910 -24383210 + MLT1B LTR MaLR 178 373 -17 4 1586 224 261 92 61 chr4 131249317 131249415 -24380705 + MIR SINE MIR 61 161 -101 4 1586 185 222 0 0 chr4 131249419 131249455 -24380665 + L2b LINE L2 3316 3351 -24 4 1586 552 30 0 0 chr4 131249762 131249828 -24380292 + (CTG)n Simple_repeat Simple_repeat 1 66 0 4 1586 273 29 0 0 chr4 131250137 131250171 -24379949 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1586 520 342 74 6 chr4 131250172 131250334 -24379786 - B4 SINE B4 -23 269 97 4 1586 377 232 0 116 chr4 131251107 131251219 -24378901 + ID_B1 SINE B4 126 224 0 4 1586 1432 98 15 5 chr4 131251576 131251780 -24378340 - URR1A DNA MER1_type 0 226 21 4 1586 518 290 169 34 chr4 131252670 131252959 -24377161 + L1MEf LINE L1 877 1218 -5422 4 1586 180 0 0 0 chr4 131252959 131252979 -24377141 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1586 518 283 188 30 chr4 131252979 131253259 -24376861 + L1MEf LINE L1 1219 1527 -5113 4 1586 925 196 20 49 chr4 131253261 131253465 -24376655 + B3A SINE B2 1 198 0 4 1586 301 300 0 123 chr4 131253517 131253631 -24376489 + PB1D10 SINE Alu 18 117 0 4 1586 801 251 56 133 chr4 131253658 131254191 -24375929 + L1MEf LINE L1 1539 2030 -4610 4 1586 253 224 63 38 chr4 131254247 131254326 -24375794 - MLT1A1 LTR MaLR -21 387 307 4 1586 346 240 48 39 chr4 131254408 131254426 -24375694 + ID_B1 SINE B4 65 169 -55 4 1586 401 209 58 0 chr4 131254426 131254512 -24375608 + B1F SINE Alu 1 91 -58 4 1586 3172 78 0 8 chr4 131254668 131255069 -24375051 + MTB LTR MaLR 3 400 0 4 1586 388 349 57 11 chr4 131255071 131255248 -24374872 + L1MEf LINE L1 2151 2335 -4305 4 1586 228 306 14 0 chr4 131255255 131255327 -24374793 + MTEa LTR MaLR 307 379 0 4 1586 331 317 41 24 chr4 131255329 131255403 -24374717 + L1MEf LINE L1 2513 2588 -3956 4 1586 1118 180 18 32 chr4 131255403 131255621 -24374499 + B3 SINE B2 2 216 0 4 1586 331 317 41 24 chr4 131255621 131255669 -24374451 + L1MEf LINE L1 2589 2637 -3907 4 1586 644 236 14 20 chr4 131255684 131255831 -24374289 + B1_Mur2 SINE Alu 3 148 -1 4 1586 231 264 65 65 chr4 131255918 131256011 -24374109 + B4 SINE B4 76 168 -124 4 1586 460 234 9 61 chr4 131255941 131256055 -24374065 + PB1D9 SINE Alu 13 120 0 4 1586 515 318 73 45 chr4 131256064 131256571 -24373549 + L1MEf LINE L1 2713 3233 -3311 4 1586 555 319 18 18 chr4 131256584 131256747 -24373373 + B4A SINE B4 7 169 -123 4 1586 326 129 16 0 chr4 131256842 131256904 -24373216 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1586 589 296 84 5 chr4 131256919 131257109 -24373011 + B3 SINE B2 1 205 -11 4 1586 26 0 0 0 chr4 131257115 131257141 -24372979 + AT_rich Low_complexity Low_complexity 1 26 0 4 1586 2043 132 42 6 chr4 131257151 131257508 -24372612 + RMER1B Other Other 697 1066 0 4 1586 1569 206 14 109 chr4 131257535 131257948 -24372172 + ORR1D1 LTR MaLR 1 374 0 4 1586 5610 205 83 33 chr4 131257948 131259234 -24370886 + ORR1D1-int LTR MaLR 1 1351 -19 4 1586 1759 183 18 62 chr4 131259240 131259630 -24370490 + ORR1D1 LTR MaLR 1 373 -1 4 1586 708 217 0 30 chr4 131259631 131259764 -24370356 + RSINE1 SINE B4 17 145 -20 4 1586 405 0 0 0 chr4 131259773 131259818 -24370302 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1586 225 0 0 0 chr4 131259818 131259842 -24370278 + (CG)n Simple_repeat Simple_repeat 2 26 0 4 1586 22 0 0 0 chr4 131259854 131259876 -24370244 + AT_rich Low_complexity Low_complexity 1 22 0 4 1586 354 298 26 9 chr4 131259942 131260057 -24370063 + PB1D9 SINE Alu 1 117 -3 4 1586 1505 52 10 15 chr4 131260090 131260286 -24369834 + B2_Mm2 SINE B2 1 195 0 4 1586 519 228 16 58 chr4 131260318 131260341 -24369779 + PB1D10 SINE Alu 1 22 -95 4 1586 258 32 0 0 chr4 131260341 131260372 -24369748 + (CATG)n Simple_repeat Simple_repeat 2 32 0 4 1586 519 228 16 58 chr4 131260372 131260469 -24369651 + PB1D10 SINE Alu 23 116 -1 4 1586 1039 281 86 30 chr4 131260614 131261206 -24368914 + L1MEf LINE L1 3432 4056 -2488 4 1586 219 204 41 0 chr4 131261293 131261342 -24368778 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 4 1586 215 338 29 14 chr4 131261495 131261564 -24368556 + BC1_Mm scRNA scRNA 9 78 -74 4 1586 491 295 13 13 chr4 131261676 131261834 -24368286 + RSINE1 SINE B4 4 161 -4 4 1586 684 205 0 0 chr4 131261975 131262131 -24367989 + (TG)n Simple_repeat Simple_repeat 1 156 0 4 1586 249 272 79 0 chr4 131262131 131262245 -24367875 - L1M2 LINE L1 -1667 4476 4354 4 1586 525 226 102 18 chr4 131262247 131262414 -24367706 + L1_Mur3 LINE L1 4453 4633 -1247 5 1586 240 343 120 12 chr4 131262443 131262768 -24367352 + L1MEf LINE L1 4630 4989 -1555 4 1586 493 251 63 63 chr4 131263013 131263204 -24366916 - RLTR23 LTR ERV1 0 430 240 5 1586 293 309 47 20 chr4 131263825 131263974 -24366146 - MIRm SINE MIR -82 186 36 5 1586 224 274 110 44 chr4 131264484 131264632 -24365488 - MIRm SINE MIR -32 244 82 5 1586 1119 245 58 129 chr4 131264989 131265368 -24364752 - MTE2a LTR MaLR -14 365 14 5 1586 205 258 152 0 chr4 131266390 131266456 -24363664 + MIR SINE MIR 96 171 -91 5 1586 341 301 168 0 chr4 131266791 131266904 -24363216 - B1F1 SINE Alu 0 149 18 5 1586 187 216 78 0 chr4 131267764 131267815 -24362305 + MIRm SINE MIR 33 87 -189 5 1586 253 261 78 106 chr4 131267872 131268090 -24362030 - L1ME1 LINE L1 -38 6141 5930 5 1586 977 294 135 51 chr4 131268125 131268738 -24361382 + Lx9 LINE L1 6963 7627 -17 5 1586 740 213 0 47 chr4 131269334 131269482 -24360638 + B1_Mur1 SINE Alu 9 149 0 5 1586 343 243 75 104 chr4 131269768 131270048 -24360072 - L1MD LINE L1 -768 5378 5107 5 1586 815 241 160 55 chr4 131270488 131270813 -24359307 - ORR1E LTR MaLR 0 359 1 5 1586 346 295 91 71 chr4 131271371 131271422 -24358698 - Helitron3Na_Mam RC Helitron -257 229 186 5 1586 472 292 49 0 chr4 131271422 131271566 -24358554 - RSINE1 SINE B4 -11 154 4 5 1586 346 295 91 71 chr4 131271566 131271711 -24358409 - Helitron3Na_Mam RC Helitron -301 185 29 5 1586 347 226 19 0 chr4 131271716 131271822 -24358298 + (CAGA)n Simple_repeat Simple_repeat 4 111 0 5 1586 310 220 17 0 chr4 131271978 131272037 -24358083 + PB1D10 SINE Alu 5 64 -53 5 1586 187 265 68 57 chr4 131272380 131272468 -24357652 - MER5B DNA MER1_type -1 177 89 5 1586 399 198 12 12 chr4 131272504 131272586 -24357534 - ID4 SINE ID 0 83 2 5 1586 359 256 12 0 chr4 131272601 131272687 -24357433 - PB1D10 SINE Alu -30 87 1 5 1586 207 268 82 52 chr4 131273038 131273075 -24357045 - MIR SINE MIR -119 143 108 5 1586 2901 110 20 11 chr4 131273075 131273524 -24356596 + RLTR11B LTR ERVK 1 453 0 5 1586 207 268 82 52 chr4 131273524 131273620 -24356500 - MIR SINE MIR -155 107 6 5 1586 383 326 64 49 chr4 131273755 131274100 -24356020 - ERVL-E-int LTR ERVL -2533 3134 2785 5 1586 492 72 0 0 chr4 131274267 131274336 -24355784 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1586 519 265 220 9 chr4 131274365 131274596 -24355524 - B4 SINE B4 -13 279 1 5 1586 285 317 94 47 chr4 131275255 131275361 -24354759 + Cheshire DNA MER1_type 1 111 -2309 5 1586 261 310 0 89 chr4 131275364 131275488 -24354632 + PB1D10 SINE Alu 3 115 -2 5 1586 289 259 165 61 chr4 131275538 131275565 -24354555 - B1F1 SINE Alu -21 128 105 5 1586 342 0 0 0 chr4 131275565 131275603 -24354517 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1586 396 188 132 6 chr4 131275603 131275690 -24354430 - PB1D10 SINE Alu -45 104 2 5 1586 280 256 61 0 chr4 131275627 131275704 -24354416 - MT2B LTR ERVL -363 238 157 5 1586 418 259 21 91 chr4 131275704 131275891 -24354229 - LTR41B LTR ERVL 0 758 585 5 1586 293 310 11 11 chr4 131277630 131277718 -24352402 - MER47C DNA MER2_type 0 97 10 5 1586 267 130 0 0 chr4 131278719 131278773 -24351347 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1586 628 121 69 46 chr4 131279291 131279421 -24350699 + URR1B DNA MER1_type 93 225 0 5 1586 365 276 122 37 chr4 131279560 131279738 -24350382 - MIRm SINE MIR -73 203 12 5 1586 330 87 0 0 chr4 131280011 131280057 -24350063 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1586 225 306 20 39 chr4 131280161 131280314 -24349806 + GA-rich Low_complexity Low_complexity 2 151 0 5 1586 342 333 41 0 chr4 131281411 131281534 -24348586 - MIR3 SINE MIR -69 139 12 5 1586 1754 157 6 13 chr4 131282016 131282332 -24347788 - MTC LTR MaLR 0 421 108 5 1586 849 182 14 0 chr4 131282334 131282482 -24347638 + B1_Mur4 SINE Alu 1 150 0 5 1586 283 192 0 27 chr4 131282484 131282559 -24347561 + GA-rich Low_complexity Low_complexity 2 74 0 5 1586 434 235 10 0 chr4 131282577 131282679 -24347441 - MTC LTR MaLR -312 109 7 5 1586 200 111 0 27 chr4 131283013 131283050 -24347070 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 5 1586 256 310 0 0 chr4 131283078 131283133 -24346987 + Charlie4z DNA MER1_type 84 138 -29 5 1586 318 177 16 16 chr4 131283133 131283196 -24346924 - MLT1J1 LTR MaLR 0 411 349 5 1586 453 281 35 0 chr4 131283344 131283458 -24346662 + B4A SINE B4 2 119 -173 5 1586 263 28 0 27 chr4 131283475 131283512 -24346608 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1586 506 186 29 0 chr4 131283526 131283666 -24346454 + (TAGA)n Simple_repeat Simple_repeat 2 145 0 5 1586 393 231 31 54 chr4 131283704 131283853 -24346267 - MLT1J1 LTR MaLR -298 146 1 5 1586 202 230 0 6 chr4 131284148 131284203 -24345917 - MIR SINE MIR -102 166 109 5 1586 21 0 0 0 chr4 131284642 131284663 -24345457 + GC_rich Low_complexity Low_complexity 1 21 0 5 1586 207 0 0 0 chr4 131286297 131286320 -24343800 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1586 741 227 214 0 chr4 131287046 131287284 -24342836 - MT2A LTR ERVL 0 533 245 5 1586 486 49 0 0 chr4 131287284 131287345 -24342775 + (CAG)n Simple_repeat Simple_repeat 2 62 0 5 1586 402 224 73 51 chr4 131287465 131287601 -24342519 + MLT1A1 LTR MaLR 236 405 -3 5 1586 182 37 0 36 chr4 131287634 131287662 -24342458 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1586 236 259 46 62 chr4 131288734 131288863 -24341257 + MIRm SINE MIR 75 201 -7 5 1586 1340 239 50 63 chr4 131289393 131289772 -24340348 - MTEb LTR MaLR -1 378 5 5 1586 229 233 115 11 chr4 131289793 131289880 -24340240 + MLT1A LTR MaLR 74 169 -205 5 1586 3405 21 34 0 chr4 131290049 131290430 -24339690 - MTA_Mm LTR MaLR -2 394 1 5 1586 981 294 43 11 chr4 131290645 131290924 -24339196 - B4A SINE B4 -4 288 1 5 1586 383 283 105 9 chr4 131291517 131291631 -24338489 + B1F1 SINE Alu 25 149 0 5 1586 342 310 35 65 chr4 131291807 131291850 -24338270 + B4A SINE B4 53 93 -199 5 1586 456 19 0 0 chr4 131291850 131291903 -24338217 + (TGG)n Simple_repeat Simple_repeat 2 54 0 5 1586 789 182 0 0 chr4 131291908 131292040 -24338080 + B1_Mus1 SINE Alu 16 147 -1 5 1586 342 310 35 65 chr4 131292040 131292059 -24338061 + B4A SINE B4 99 245 -47 5 1586 278 285 19 4 chr4 131292085 131292220 -24337900 + L1M3 LINE L1 5480 5616 -684 5 1586 679 269 145 12 chr4 131292220 131292468 -24337652 + B4A SINE B4 2 282 -10 5 1586 272 27 27 0 chr4 131292526 131292563 -24337557 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1586 412 324 97 17 chr4 131292574 131292750 -24337370 + Lx7 LINE L1 5589 5778 -1918 5 1586 853 144 0 93 chr4 131292754 131292915 -24337205 - B1_Mur2 SINE Alu -2 147 2 5 1586 270 0 0 0 chr4 131292926 131292956 -24337164 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 5 1586 760 143 7 50 chr4 131292956 131293096 -24337024 - B1_Mur4 SINE Alu -3 147 14 5 1586 283 264 16 120 chr4 131292993 131293118 -24337002 - MT2B LTR ERVL -337 264 153 5 1586 1211 167 28 9 chr4 131293124 131293336 -24336784 - B3 SINE B2 0 216 1 5 1586 1463 189 157 23 chr4 131293595 131294053 -24336067 + RMER4B LTR ERVK 19 565 -20 5 1586 789 181 0 0 chr4 131294258 131294435 -24335685 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1586 192 238 0 100 chr4 131296045 131296115 -24334005 + L3 LINE CR1 120 182 -4307 5 1586 1459 284 63 13 chr4 131296400 131296861 -24333259 - RMER5 LTR ERV1 -2 532 49 5 1586 488 347 55 61 chr4 131297339 131297683 -24332437 - ORR1E LTR MaLR 0 359 18 5 1586 240 359 84 4 chr4 131298225 131298416 -24331704 - L2c LINE L2 -188 3187 2974 5 1586 401 95 16 0 chr4 131299911 131299974 -24330146 + (GGA)n Simple_repeat Simple_repeat 3 66 0 5 1586 301 222 125 80 chr4 131301085 131301173 -24328947 + PB1 SINE Alu 6 108 -19 5 1586 554 196 0 0 chr4 131301215 131301317 -24328803 + MTD LTR MaLR 1 102 -317 5 1586 1480 153 78 7 chr4 131301958 131302254 -24327866 + MTD LTR MaLR 77 393 -26 5 1586 480 163 0 0 chr4 131302268 131302354 -24327766 + (ATGGTG)n Simple_repeat Simple_repeat 1 86 0 5 1586 411 218 324 53 chr4 131302360 131302607 -24327513 - RMER20B LTR ERVK -30 597 284 5 1586 518 222 14 62 chr4 131302920 131303064 -24327056 + RSINE1 SINE B4 1 137 -28 5 1586 419 52 0 17 chr4 131303722 131303781 -24326339 + (TTTTG)n Simple_repeat Simple_repeat 5 62 0 5 1586 508 122 0 100 chr4 131303816 131304016 -24326104 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1586 366 153 0 51 chr4 131304030 131304147 -24325973 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1586 229 118 0 38 chr4 131304196 131304249 -24325871 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1586 338 256 75 184 chr4 131304282 131304392 -24325728 - B4 SINE B4 0 292 98 5 1586 638 192 50 0 chr4 131304392 131304512 -24325608 - B1_Mur1 SINE Alu -18 131 6 5 1586 507 265 8 8 chr4 131304576 131304694 -24325426 - B4A SINE B4 -172 120 3 5 1586 2085 167 5 27 chr4 131305624 131305999 -24324121 - ORR1B2 LTR MaLR 0 367 1 5 1586 380 288 8 16 chr4 131306350 131306477 -24323643 - ID_B1 SINE B4 -18 206 81 5 1586 206 272 126 42 chr4 131306541 131306660 -24323460 + MIRc SINE MIR 14 142 -126 5 1586 227 182 23 0 chr4 131307861 131307905 -24322215 + GA-rich Low_complexity Low_complexity 1 45 0 5 1586 198 71 0 0 chr4 131308513 131308541 -24321579 + (G)n Simple_repeat Simple_repeat 1 28 0 5 1586 632 276 27 22 chr4 131308579 131308776 -24321344 + ID_B1 SINE B4 54 248 -44 5 1586 192 152 0 0 chr4 131308778 131308811 -24321309 + GA-rich Low_complexity Low_complexity 1 33 0 5 1586 336 188 0 30 chr4 131308874 131308923 -24321197 + MTE2b LTR MaLR 43 91 -288 5 1586 1151 189 52 0 chr4 131308923 131309135 -24320985 + URR1B DNA MER1_type 1 223 -2 5 1586 336 188 0 30 chr4 131309135 131309151 -24320969 + MTE2b LTR MaLR 92 105 -274 5 1586 1037 254 41 26 chr4 131309153 131309459 -24320661 + MTE2b LTR MaLR 58 377 -30 5 1586 446 170 206 9 chr4 131309456 131309563 -24320557 - B1_Mur1 SINE Alu -21 128 1 5 1586 293 140 17 17 chr4 131309563 131309621 -24320499 + MTE2b LTR MaLR 322 379 0 5 1586 234 316 172 31 chr4 131310377 131310540 -24319580 + LTR41B LTR ERVL 463 648 -110 6 1586 198 0 0 0 chr4 131310544 131310566 -24319554 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1586 1220 104 161 0 chr4 131310706 131310898 -24319222 + URR1B DNA MER1_type 3 225 0 6 1586 378 324 54 40 chr4 131310913 131311135 -24318985 + RMER15 LTR ERVL 347 571 -4 6 1586 2539 135 20 49 chr4 131311367 131311773 -24318347 + ORR1B1 LTR MaLR 1 394 0 6 1586 1252 365 76 54 chr4 131312111 131313293 -24316827 - ERVL-E-int LTR ERVL -1097 4570 3365 6 1586 835 243 0 22 chr4 131313293 131313478 -24316642 + B3A SINE B2 2 182 -16 6 1586 1252 365 76 54 chr4 131313478 131313770 -24316350 - ERVL-E-int LTR ERVL -2303 3364 3063 6 1586 434 200 0 24 chr4 131313859 131313941 -24316179 + ID4 SINE ID 2 81 -2 6 1586 3181 59 20 13 chr4 131314116 131314512 -24315608 + MTB LTR MaLR 2 400 0 6 1586 225 395 0 0 chr4 131314817 131314931 -24315189 + Lx8 LINE L1 6689 6802 -671 6 1586 907 219 64 30 chr4 131314938 131315140 -24314980 + B3 SINE B2 1 209 -7 6 1586 617 384 45 64 chr4 131315157 131315278 -24314842 + Lx8 LINE L1 6790 6902 -571 6 1586 959 256 14 0 chr4 131315278 131315489 -24314631 + B3 SINE B2 3 216 0 6 1586 617 384 45 64 chr4 131315489 131315884 -24314236 + Lx8 LINE L1 6903 7296 -177 6 1586 22 0 0 0 chr4 131316045 131316067 -24314053 + AT_rich Low_complexity Low_complexity 1 22 0 6 1586 220 96 58 0 chr4 131316068 131316120 -24314000 + T-rich Low_complexity Low_complexity 3 57 0 6 1586 347 211 0 28 chr4 131316141 131316248 -24313872 - Lx6 LINE L1 -26 7434 7331 6 1586 542 357 60 26 chr4 131316249 131316597 -24313523 - ERVL-E-int LTR ERVL -3262 2405 2046 6 1586 370 350 133 33 chr4 131316610 131317179 -24312941 - ERVL-E-int LTR ERVL -3658 2056 1376 6 1586 1361 68 22 11 chr4 131317256 131317435 -24312685 + B2_Mm2 SINE B2 1 181 -14 6 1586 386 73 42 3 chr4 131317463 131317558 -24312562 + B2_Mm2 SINE B2 47 181 -14 6 1586 360 0 0 0 chr4 131318179 131318219 -24311901 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1586 773 242 19 0 chr4 131319060 131319221 -24310899 + RSINE1 SINE B4 2 165 0 6 1586 352 344 50 75 chr4 131319519 131319720 -24310400 - LTR41 LTR ERVL -572 196 1 6 1586 209 309 51 41 chr4 131320116 131320214 -24309906 - L2b LINE L2 -2 3373 3275 6 1586 2460 86 3 58 chr4 131320522 131320868 -24309252 + ORR1A2 LTR MaLR 1 327 0 6 1586 623 250 31 25 chr4 131320977 131321137 -24308983 + RSINE1 SINE B4 4 164 -1 6 1586 396 289 168 41 chr4 131321679 131322043 -24308077 - MLT1H LTR MaLR 0 549 140 6 1586 4137 55 15 5 chr4 131322041 131322656 -24307464 + MTA_Mm-int LTR MaLR 496 1129 -663 6 1586 3570 25 2 0 chr4 131322657 131323052 -24307068 + MTA_Mm LTR MaLR 1 396 0 6 1586 864 299 59 7 chr4 131323359 131323629 -24306491 - B4A SINE B4 -8 284 1 6 1586 182 91 0 29 chr4 131323681 131323715 -24306405 + (CCCCCT)n Simple_repeat Simple_repeat 2 34 0 6 1586 1223 264 70 17 chr4 131323768 131324127 -24305993 + MTD LTR MaLR 42 419 0 6 1586 387 290 11 0 chr4 131324127 131324220 -24305900 + MTEa LTR MaLR 269 362 -17 6 1586 451 245 76 7 chr4 131324374 131324518 -24305602 - MIRc SINE MIR -18 250 97 6 1586 188 281 53 0 chr4 131326410 131326467 -24303653 - L2a LINE L2 -111 3315 3256 6 1586 759 222 11 74 chr4 131326543 131326718 -24303402 + RSINE1 SINE B4 2 165 0 6 1586 500 299 6 63 chr4 131326760 131326935 -24303185 + RSINE1 SINE B4 1 165 0 6 1586 197 314 55 55 chr4 131328078 131328206 -24301914 + MIR SINE MIR 2 129 -133 6 1586 223 297 132 0 chr4 131330490 131330594 -24299526 + MIRc SINE MIR 115 230 -32 6 1586 610 170 0 67 chr4 131331159 131331279 -24298841 + B1_Mur4 SINE Alu 2 113 -37 6 1586 393 236 7 106 chr4 131331160 131331302 -24298818 + ID_B1 SINE B4 84 211 -13 6 1586 242 234 78 0 chr4 131331402 131331466 -24298654 + B1F1 SINE Alu 1 69 -80 6 1586 407 240 7 83 chr4 131331507 131331672 -24298448 + B4 SINE B4 12 156 -136 6 1586 615 191 0 0 chr4 131331680 131331837 -24298283 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 1586 198 209 0 0 chr4 131331894 131331937 -24298183 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1586 342 0 0 0 chr4 131331971 131332009 -24298111 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1586 264 317 10 0 chr4 131332009 131332110 -24298010 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1586 213 372 73 26 chr4 131333149 131333381 -24296739 + L2c LINE L2 3099 3341 -46 6 1586 465 103 0 0 chr4 131333883 131333951 -24296169 + (CGTG)n Simple_repeat Simple_repeat 2 69 0 6 198 1024 251 38 8 chr4 131333965 131334226 -24295894 - B4 SINE B4 -22 270 2 6 1587 1064 113 60 33 chr4 131334360 131334543 -24295577 + B2_Mm2 SINE B2 1 188 -7 6 1587 450 0 0 0 chr4 131334573 131334623 -24295497 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1587 287 299 66 22 chr4 131335443 131335580 -24294540 + MIRb SINE MIR 118 260 -8 6 1587 371 165 0 12 chr4 131336612 131336698 -24293422 + (CAGG)n Simple_repeat Simple_repeat 2 86 0 6 1587 366 205 51 0 chr4 131338145 131338223 -24291897 + ID4_ SINE ID 2 83 0 6 1587 748 231 85 10 chr4 131338887 131339088 -24291032 - B3 SINE B2 0 216 1 6 1587 272 333 0 0 chr4 131339183 131339258 -24290862 - RSINE1 SINE B4 -5 160 86 6 1587 877 265 101 11 chr4 131339372 131339639 -24290481 - B4 SINE B4 -1 291 1 6 1587 198 103 0 0 chr4 131340364 131340393 -24289727 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1587 690 169 16 0 chr4 131340469 131340593 -24289527 + B1F SINE Alu 24 149 0 6 1587 216 0 0 0 chr4 131340726 131340750 -24289370 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 6 1587 743 126 93 29 chr4 131340783 131340922 -24289198 - B1_Mur3 SINE Alu -1 148 1 6 1587 317 279 25 0 chr4 131340922 131341001 -24289119 - ID SINE ID -142 82 2 6 1587 206 158 26 0 chr4 131341475 131341513 -24288607 + GA-rich Low_complexity Low_complexity 1 39 0 6 1587 515 102 11 0 chr4 131341561 131341649 -24288471 + (GGA)n Simple_repeat Simple_repeat 3 91 0 6 1587 181 182 0 0 chr4 131342187 131342220 -24287900 + MIRc SINE MIR 61 93 -175 6 1587 24 0 0 0 chr4 131342320 131342344 -24287776 + AT_rich Low_complexity Low_complexity 1 24 0 6 1587 630 245 152 10 chr4 131342571 131342769 -24287351 + MIRb SINE MIR 29 254 -14 6 1587 227 133 42 62 chr4 131342739 131342787 -24287333 + L2b LINE L2 3328 3374 -1 6 1587 261 385 10 0 chr4 131344630 131344726 -24285394 + MIR3 SINE MIR 109 205 -3 6 1587 270 301 60 75 chr4 131345661 131345862 -24284258 - RLTR21 LTR ERVK -206 1366 1169 6 1587 230 330 22 11 chr4 131346491 131346583 -24283537 + B4A SINE B4 42 134 -158 6 1587 285 322 136 17 chr4 131346595 131346772 -24283348 + MTE2a LTR MaLR 145 342 -37 6 1587 294 225 88 0 chr4 131346943 131347023 -24283097 + ID_B1 SINE B4 127 213 -11 6 1587 349 245 32 0 chr4 131347055 131347149 -24282971 - MIRc SINE MIR -130 138 42 6 1587 626 261 25 13 chr4 131347626 131347785 -24282335 + RSINE1 SINE B4 3 163 -2 6 1587 258 81 0 0 chr4 131347816 131347853 -24282267 + (AGGGGG)n Simple_repeat Simple_repeat 3 39 0 6 1587 307 302 124 0 chr4 131348136 131348265 -24281855 + L1M5 LINE L1 4909 5053 -1093 6 1587 863 249 80 26 chr4 131348423 131348687 -24281433 - B4A SINE B4 -14 278 1 6 1587 587 318 43 64 chr4 131348691 131349242 -24280878 + L1M5 LINE L1 5083 5640 -600 6 1587 358 370 105 6 chr4 131350238 131350570 -24279550 + L3 LINE CR1 3443 3807 -682 6 1587 306 292 0 0 chr4 131351560 131351632 -24278488 + ID4 SINE ID 12 83 0 6 1587 200 125 0 0 chr4 131351635 131351667 -24278453 - MIR SINE MIR -118 144 113 6 1587 187 301 52 0 chr4 131352459 131352552 -24277568 + L2a LINE L2 3272 3409 -17 6 1587 211 295 120 43 chr4 131352775 131352892 -24277228 + MIRc SINE MIR 1 129 -139 6 1587 607 258 88 52 chr4 131353066 131353258 -24276862 - ID_B1 SINE B4 0 224 26 6 1587 434 224 28 34 chr4 131355009 131355185 -24274935 + (CTGGGG)n Simple_repeat Simple_repeat 6 180 0 6 1587 243 265 132 0 chr4 131355765 131355848 -24274272 + MIRc SINE MIR 60 153 -115 6 1587 804 269 29 132 chr4 131357375 131357745 -24272375 + MTEa LTR MaLR 23 350 -24 6 1587 207 0 0 0 chr4 131357978 131358001 -24272119 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1587 371 333 105 6 chr4 131359409 131359581 -24270539 + MIRb SINE MIR 23 211 -57 6 1587 887 222 19 115 chr4 131360077 131360316 -24269804 + B4A SINE B4 49 269 -23 6 1587 210 37 0 0 chr4 131360316 131360343 -24269777 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1587 426 39 0 0 chr4 131360343 131360394 -24269726 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1587 887 222 19 115 chr4 131360394 131360423 -24269697 + B4A SINE B4 270 291 -1 6 1587 243 237 0 0 chr4 131360501 131360594 -24269526 + (CA)n Simple_repeat Simple_repeat 1 93 0 6 1587 267 152 25 12 chr4 131360639 131360719 -24269401 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 1587 317 93 19 0 chr4 131360736 131360790 -24269330 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1587 310 125 62 15 chr4 131360825 131360890 -24269230 + HAL1-3A_ME LINE L1 1967 2034 -824 6 1587 188 167 21 0 chr4 131360890 131360938 -24269182 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1587 188 143 24 0 chr4 131360955 131360997 -24269123 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1587 280 339 120 14 chr4 131361162 131361437 -24268683 + L1ME3A LINE L1 5456 5759 -414 6 1587 467 313 55 34 chr4 131361681 131361919 -24268201 + L1ME3A LINE L1 5879 6121 -52 6 1587 244 369 32 39 chr4 131361990 131362145 -24267975 + LTR85b LTR Gypsy? 386 539 -245 6 1587 344 221 15 0 chr4 131362468 131362536 -24267584 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 6 1587 190 342 25 12 chr4 131362612 131362692 -24267428 + MIR SINE MIR 128 208 -54 6 1587 489 260 132 6 chr4 131362741 131362915 -24267205 + L1M5 LINE L1 2644 2839 -3307 6 1587 234 218 146 0 chr4 131362934 131362989 -24267131 + ID4_ SINE ID 2 64 -19 6 1587 1059 103 7 14 chr4 131363040 131363187 -24266933 + B1_Mur4 SINE Alu 4 149 -1 6 1587 342 310 69 14 chr4 131363209 131363353 -24266767 + L1M5 LINE L1 2809 2960 -3186 6 1587 251 337 32 0 chr4 131363519 131363614 -24266506 + PB1D10 SINE Alu 12 109 -8 6 1587 821 237 86 45 chr4 131363658 131363901 -24266219 + B4A SINE B4 1 253 -39 6 1587 359 273 44 36 chr4 131363901 131364038 -24266082 + L1M5 LINE L1 3468 3605 -2541 6 1587 201 250 0 37 chr4 131364445 131364499 -24265621 + GA-rich Low_complexity Low_complexity 6 57 0 6 1587 182 306 111 10 chr4 131364582 131364681 -24265439 + MIRb SINE MIR 36 144 -124 7 1587 669 236 14 0 chr4 131364826 131364966 -24265154 + RSINE1 SINE B4 1 142 -23 7 1587 558 0 0 0 chr4 131364974 131365036 -24265084 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 7 1587 254 176 351 0 chr4 131365069 131365143 -24264977 + PB1D10 SINE Alu 4 103 -14 7 1587 306 343 86 34 chr4 131365264 131365439 -24264681 - MIR SINE MIR -59 203 20 7 1587 923 241 31 9 chr4 131365595 131365817 -24264303 + B4 SINE B4 1 227 -65 7 1587 500 298 0 16 chr4 131365817 131365940 -24264180 + RSINE1 SINE B4 45 165 0 7 1587 778 135 38 6 chr4 131365944 131366263 -24263857 + (CA)n Simple_repeat Simple_repeat 1 329 0 7 1587 341 308 16 24 chr4 131367000 131367123 -24262997 - Charlie8 DNA MER1_type -2251 177 56 7 1587 501 198 9 9 chr4 131367681 131367793 -24262327 + ID_B1 SINE B4 109 220 -4 7 1587 687 195 11 12 chr4 131367876 131368047 -24262073 - URR1B DNA MER1_type 0 225 26 7 1587 365 222 12 0 chr4 131368063 131368144 -24261976 + ID_B1 SINE B4 143 224 0 7 1587 1489 242 65 0 chr4 131368941 131369297 -24260823 + MTE2b LTR MaLR 1 379 0 7 1587 318 26 0 0 chr4 131369561 131369600 -24260520 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1587 194 62 31 0 chr4 131369781 131369813 -24260307 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1587 258 128 0 0 chr4 131369883 131369922 -24260198 - B4A SINE B4 -253 39 1 7 1587 361 246 57 33 chr4 131370299 131370403 -24259717 - MER20 DNA MER1_type -94 125 23 7 1587 1023 0 24 0 chr4 131370403 131370530 -24259590 + (CCA)n Simple_repeat Simple_repeat 2 131 0 7 1587 361 246 57 33 chr4 131370530 131370547 -24259573 - MER20 DNA MER1_type -197 22 1 7 1587 507 331 42 92 chr4 131370575 131370934 -24259186 + L2a LINE L2 2289 2629 -790 7 1587 1184 246 230 6 chr4 131371067 131371411 -24258709 - MTC LTR MaLR 0 421 1 7 1587 922 281 32 111 chr4 131371594 131372026 -24258094 + L2a LINE L2 3018 3415 -11 7 1587 207 370 9 36 chr4 131372030 131372142 -24257978 - MIR SINE MIR -77 185 77 7 1587 809 217 25 6 chr4 131372258 131372416 -24257704 + RSINE1 SINE B4 4 164 -1 7 1587 230 0 0 32 chr4 131372442 131372473 -24257647 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 7 1587 649 275 57 61 chr4 131372487 131372987 -24257133 + L1MD2 LINE L1 4943 5434 -925 7 1587 694 260 0 33 chr4 131372993 131373176 -24256944 + B3A SINE B2 7 183 -15 7 1587 485 312 48 34 chr4 131373220 131373512 -24256608 + L1MB8 LINE L1 5883 6178 0 7 1587 693 263 96 21 chr4 131373510 131373790 -24256330 + L1MD2 LINE L1 5879 6179 -180 7 1587 511 218 96 8 chr4 131373890 131374015 -24256105 - RSINE1 SINE B4 -28 137 2 7 1587 460 254 48 0 chr4 131374366 131374492 -24255628 + MIR SINE MIR 50 181 -81 7 1587 2437 76 31 6 chr4 131378610 131378929 -24251191 + ORR1A2 LTR MaLR 1 327 0 7 1587 762 219 138 11 chr4 131378934 131379123 -24250997 - B3 SINE B2 -2 214 2 7 1587 283 290 0 0 chr4 131379142 131379211 -24250909 - PB1D10 SINE Alu -2 115 47 7 1587 415 354 19 19 chr4 131379338 131379499 -24250621 - MIR SINE MIR -91 171 11 7 1587 199 242 58 43 chr4 131380241 131380310 -24249810 - MIR SINE MIR -92 170 101 7 1587 215 299 65 14 chr4 131380500 131380596 -24249524 - MIRc SINE MIR -120 156 68 7 1587 192 283 0 54 chr4 131380587 131380643 -24249477 + MIRb SINE MIR 34 86 -182 7 1587 342 0 0 0 chr4 131382753 131382791 -24247329 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1587 309 26 0 0 chr4 131383140 131383178 -24246942 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1587 534 93 0 0 chr4 131383194 131383280 -24246840 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 1587 524 237 0 30 chr4 131383574 131383709 -24246411 + ID_B1 SINE B4 88 218 -6 7 1587 218 167 62 0 chr4 131383666 131383714 -24246406 + PB1D10 SINE Alu 66 116 -1 7 1587 567 78 0 0 chr4 131383935 131384012 -24246108 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1587 1052 50 0 68 chr4 131384630 131384822 -24245298 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 7 1587 365 0 22 0 chr4 131385441 131385486 -24244634 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1587 231 321 124 22 chr4 131385909 131386046 -24244074 + RMER15 LTR ERVL 8 158 -417 7 1587 395 211 252 0 chr4 131386142 131386265 -24243855 + RMER15 LTR ERVL 422 575 0 7 1587 329 386 31 22 chr4 131387838 131388066 -24242054 - MIR SINE MIR -22 240 11 7 1587 1192 140 130 0 chr4 131389154 131389354 -24240766 - URR1A DNA MER1_type 0 226 1 7 1587 519 294 12 18 chr4 131389369 131389532 -24240588 + MER3 DNA MER1_type 15 176 -33 7 1587 204 40 0 0 chr4 131390477 131390502 -24239618 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 7 1587 407 271 0 70 chr4 131390520 131390635 -24239485 - B1F SINE Alu -30 119 13 7 1587 182 352 142 41 chr4 131390857 131391076 -24239044 - L2c LINE L2 -229 3158 2918 7 1587 322 214 43 0 chr4 131391787 131391857 -24238263 - MIRb SINE MIR -148 120 48 7 1587 321 89 0 0 chr4 131392663 131392708 -24237412 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1587 419 78 16 0 chr4 131392781 131392845 -24237275 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1587 210 171 0 0 chr4 131393272 131393313 -24236807 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1587 266 0 29 0 chr4 131393553 131393587 -24236533 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1587 339 362 45 13 chr4 131394755 131394909 -24235211 - MIRb SINE MIR -72 196 38 7 1587 389 257 132 31 chr4 131395046 131395227 -24234893 + B3A SINE B2 1 185 -10 7 1587 208 219 24 0 chr4 131395227 131395268 -24234852 - L2a LINE L2 -95 3331 3290 7 1587 390 306 44 15 chr4 131396400 131396536 -24233584 - MIRb SINE MIR -109 159 20 7 1587 200 339 32 0 chr4 131396773 131396835 -24233285 - L2b LINE L2 -16 3359 3296 7 1587 527 304 12 119 chr4 131397597 131397719 -24232401 - MIRb SINE MIR -12 256 154 7 1587 354 205 24 71 chr4 131397719 131397803 -24232317 - ID4 SINE ID -2 81 2 7 1587 527 304 12 119 chr4 131397803 131397923 -24232197 - MIRb SINE MIR -115 153 40 7 1587 190 305 89 41 chr4 131398505 131398524 -24231596 - MIRb SINE MIR -43 225 207 7 1587 1196 61 0 26 chr4 131398524 131398676 -24231444 - B1_Mus1 SINE Alu 0 148 1 7 1587 190 305 89 41 chr4 131398676 131398779 -24231341 - MIRb SINE MIR -62 206 97 7 1587 376 303 39 88 chr4 131398795 131398853 -24231267 + B4 SINE B4 50 220 -71 7 1587 744 131 82 0 chr4 131398853 131398975 -24231145 + B1_Mus1 SINE Alu 11 142 -6 7 1587 360 298 89 36 chr4 131399827 131399998 -24230122 - MIR SINE MIR -53 215 38 7 1587 900 170 0 7 chr4 131400190 131400338 -24229782 + B1_Mur2 SINE Alu 1 147 -2 7 1587 355 260 91 0 chr4 131400357 131400434 -24229686 + PB1D10 SINE Alu 26 109 -8 7 1587 22 35 0 0 chr4 131400447 131400476 -24229644 + AT_rich Low_complexity Low_complexity 1 29 0 7 1587 524 212 57 19 chr4 131400494 131400605 -24229515 + PB1D10 SINE Alu 4 117 0 7 1587 298 287 0 65 chr4 131400662 131400755 -24229365 - ID_B1 SINE B4 -17 207 121 7 1587 381 157 281 0 chr4 131400830 131400919 -24229201 - PB1D9 SINE Alu -1 119 6 7 1587 241 315 49 106 chr4 131400869 131401011 -24229109 - B4A SINE B4 -152 140 7 7 1587 274 330 23 0 chr4 131401028 131401116 -24229004 - PB1 SINE Alu -12 115 26 7 1587 268 203 114 91 chr4 131401320 131401464 -24228656 - MIR3 SINE MIR -111 157 7 7 1587 183 267 44 0 chr4 131401581 131401626 -24228494 - MIRc SINE MIR -143 125 79 7 1587 432 97 0 0 chr4 131401636 131401698 -24228422 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1587 270 330 28 19 chr4 131401704 131401812 -24228308 - RSINE1 SINE B4 -53 112 4 7 1587 431 242 44 0 chr4 131403002 131403093 -24227027 + PB1 SINE Alu 31 125 -2 7 1587 268 311 86 19 chr4 131404509 131404614 -24225506 + MER103 DNA DNA 53 164 -2 7 1587 229 221 78 69 chr4 131404661 131404763 -24225357 + MIRm SINE MIR 80 182 -94 7 1587 225 211 135 0 chr4 131405191 131405243 -24224877 + MER46C DNA MER2_type 3 61 -277 7 1587 885 174 7 13 chr4 131405431 131405582 -24224538 + B1_Mur4 SINE Alu 1 150 0 7 1587 374 325 106 25 chr4 131406160 131406359 -24223761 + MIR SINE MIR 48 262 0 7 1587 267 31 0 0 chr4 131406390 131406422 -24223698 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1587 359 255 163 54 chr4 131406830 131407033 -24223087 + Charlie19a DNA Charlie 75 299 -87 7 1587 1200 152 99 21 chr4 131407150 131407392 -24222728 + MTC LTR MaLR 1 261 -160 7 1587 551 324 25 41 chr4 131407387 131407583 -24222537 + B3A SINE B2 5 197 -1 7 1587 330 207 268 0 chr4 131407600 131407682 -24222438 + B3 SINE B2 29 132 -84 7 1587 1044 16 8 0 chr4 131407708 131407832 -24222288 + B1_Mus1 SINE Alu 24 148 0 7 1587 423 278 37 0 chr4 131407862 131407970 -24222150 - PB1D10 SINE Alu -4 113 2 7 1587 559 297 118 36 chr4 131408091 131408311 -24221809 - B4A SINE B4 -11 281 44 7 1587 3434 33 3 3 chr4 131408418 131408810 -24221310 + MTA_Mm LTR MaLR 1 392 -4 7 1587 384 19 0 0 chr4 131408810 131408864 -24221256 + L1Md_T LINE L1 6529 6582 0 7 1587 1229 35 14 0 chr4 131409185 131409330 -24220790 + B1_Mus1 SINE Alu 2 148 0 7 1587 189 0 0 0 chr4 131409330 131409351 -24220769 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1587 1307 251 86 9 chr4 131410135 131410472 -24219648 - ORR1D2 LTR MaLR -7 363 1 7 1587 438 214 35 23 chr4 131411668 131411754 -24218366 - B1_Mus2 SINE Alu -59 88 2 7 1587 859 253 137 25 chr4 131412058 131412342 -24217778 - RMER13A LTR ERVK -439 421 106 8 1587 875 192 23 46 chr4 131412422 131412460 -24217660 - B3 SINE B2 -44 172 140 8 1587 2413 107 3 0 chr4 131412460 131412786 -24217334 - ORR1A2 LTR MaLR 0 327 1 8 1587 875 192 23 46 chr4 131412786 131412922 -24217198 - B3 SINE B2 -77 139 2 8 1587 508 0 0 0 chr4 131413412 131413476 -24216644 - L1Md_F2 LINE L1 -20 6562 6499 8 1587 182 299 99 49 chr4 131414068 131414149 -24215971 - L2b LINE L2 -6 3381 3297 8 1587 217 329 58 12 chr4 131414384 131414470 -24215650 - MIR3 SINE MIR -53 155 66 8 1587 364 318 47 45 chr4 131414476 131414717 -24215403 - LTR16E1 LTR ERVL -11 527 205 8 1587 254 300 12 24 chr4 131414746 131414828 -24215292 - ID4 SINE ID -1 82 2 8 1587 1144 75 0 20 chr4 131415610 131415759 -24214361 - B1_Mus1 SINE Alu -1 147 2 8 1587 221 367 89 24 chr4 131415776 131415899 -24214221 - MIRb SINE MIR -135 133 3 8 1587 500 179 0 0 chr4 131415906 131415984 -24214136 + ID4_ SINE ID 2 79 -4 8 1587 204 204 20 39 chr4 131416211 131416262 -24213858 - L2b LINE L2 -223 3152 3103 8 1587 265 286 23 45 chr4 131416303 131416391 -24213729 + B4 SINE B4 2 87 -205 8 1587 339 25 0 0 chr4 131416405 131416445 -24213675 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 8 1587 393 271 27 27 chr4 131417049 131417159 -24212961 - MIRc SINE MIR -89 179 70 8 1587 745 179 200 32 chr4 131417804 131417989 -24212131 + B3 SINE B2 1 216 0 8 1587 1295 62 107 11 chr4 131419154 131419309 -24210811 + B2_Mm2 SINE B2 1 154 -41 8 1587 342 0 0 0 chr4 131419309 131419347 -24210773 + (CATA)n Simple_repeat Simple_repeat 2 39 0 8 1587 1295 62 107 11 chr4 131419347 131419369 -24210751 + B2_Mm2 SINE B2 155 195 0 8 1587 374 261 0 12 chr4 131419665 131419687 -24210433 - ID4_ SINE ID -56 96 27 8 1587 422 162 0 14 chr4 131419687 131419756 -24210364 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 8 1587 425 258 45 84 chr4 131419948 131420126 -24209994 + MIRb SINE MIR 34 204 -64 8 1587 192 350 0 0 chr4 131420179 131420239 -24209881 + MIRb SINE MIR 175 234 -34 8 1587 235 277 22 131 chr4 131420297 131420314 -24209806 + MT2B2 LTR ERVL 157 158 -426 8 1587 422 298 16 0 chr4 131420314 131420435 -24209685 + B1F SINE Alu 1 123 -26 8 1587 238 294 147 0 chr4 131420497 131420565 -24209555 + ID4 SINE ID 1 78 -5 8 1587 550 272 0 0 chr4 131421478 131421592 -24208528 + PB1D10 SINE Alu 3 116 -1 8 1587 205 330 41 25 chr4 131421715 131421836 -24208284 - MIRb SINE MIR -118 150 28 8 1587 661 207 185 28 chr4 131421948 131422139 -24207981 + B4A SINE B4 2 229 -63 8 1587 482 248 168 0 chr4 131422139 131422264 -24207856 + B1_Mur1 SINE Alu 3 148 -1 8 1587 661 207 185 28 chr4 131422264 131422321 -24207799 + B4A SINE B4 230 289 -3 8 1587 642 196 20 2 chr4 131422524 131422657 -24207463 - B1_Mm SINE Alu 0 147 4 8 1587 1219 54 168 6 chr4 131422731 131422874 -24207246 + B2_Mm2 SINE B2 2 144 -51 8 1587 360 0 0 0 chr4 131422874 131422914 -24207206 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1587 1219 54 168 6 chr4 131422914 131422937 -24207183 + B2_Mm2 SINE B2 145 195 0 8 1587 344 261 235 0 chr4 131424037 131424152 -24205968 + MER20 DNA MER1_type 3 144 -75 8 1587 498 233 0 12 chr4 131424154 131424263 -24205857 + PB1D7 SINE Alu 8 114 -6 8 1587 291 315 0 14 chr4 131424283 131424357 -24205763 + ID2 SINE ID 9 81 -2 8 1587 273 219 81 14 chr4 131424364 131424438 -24205682 + MER20 DNA MER1_type 141 219 0 8 1587 213 65 0 0 chr4 131424824 131424855 -24205265 + (G)n Simple_repeat Simple_repeat 1 31 0 8 1587 256 245 19 0 chr4 131426477 131426530 -24203590 - ID SINE ID -148 76 23 8 1587 749 191 75 53 chr4 131426589 131426777 -24203343 + B3A SINE B2 7 198 0 8 1587 314 291 84 76 chr4 131426789 131426831 -24203289 + PB1D7 SINE Alu 1 115 0 8 1587 330 254 0 14 chr4 131426831 131426903 -24203217 + ID_B1 SINE B4 151 221 -3 8 1587 216 251 41 16 chr4 131426973 131427055 -24203065 + RSINE1 SINE B4 28 115 -50 8 1587 1032 133 0 0 chr4 131427350 131427493 -24202627 - B1_Mus1 SINE Alu -5 143 1 8 1587 251 304 50 127 chr4 131427523 131427560 -24202560 + MT2B2 LTR ERVL 136 216 -368 8 1587 410 302 19 9 chr4 131427560 131427667 -24202453 + PB1D7 SINE Alu 4 111 -9 8 1587 251 304 50 127 chr4 131427667 131427704 -24202416 + MT2B2 LTR ERVL 217 302 -282 8 1587 1284 41 0 0 chr4 131428002 131428149 -24201971 + B1_Mus2 SINE Alu 1 147 0 8 1587 677 155 104 37 chr4 131428559 131428693 -24201427 + B1_Mus1 SINE Alu 6 148 0 8 1587 269 275 96 52 chr4 131428736 131428749 -24201371 + ID_B1 SINE B4 76 195 -29 8 1587 460 200 137 20 chr4 131428749 131428851 -24201269 + B1_Mur3 SINE Alu 4 117 -32 8 1587 996 77 75 31 chr4 131428850 131429010 -24201110 - B2_Mm2 SINE B2 -4 191 25 8 1587 401 213 13 0 chr4 131429027 131429102 -24201018 + ID4 SINE ID 8 83 0 8 1587 346 306 23 53 chr4 131429102 131429158 -24200962 + ID_B1 SINE B4 8 134 -90 8 1587 21 0 0 0 chr4 131429415 131429436 -24200684 + GC_rich Low_complexity Low_complexity 1 21 0 8 1587 381 262 98 8 chr4 131431059 131431182 -24198938 + MIRb SINE MIR 17 150 -118 8 1587 1089 107 201 6 chr4 131431542 131431721 -24198399 - B3 SINE B2 -1 215 2 8 1587 890 241 34 5 chr4 131431920 131432124 -24197996 + B3 SINE B2 1 210 -6 8 1587 262 216 0 39 chr4 131433442 131433519 -24196601 + T-rich Low_complexity Low_complexity 4 77 0 8 1587 186 196 62 42 chr4 131433713 131433761 -24196359 - L4 LINE RTE -515 1514 1466 8 1587 620 138 79 39 chr4 131434030 131434159 -24195961 + B1_Mus2 SINE Alu 19 149 0 8 1587 624 179 16 49 chr4 131434365 131434488 -24195632 - PB1D9 SINE Alu -1 119 1 8 1587 328 288 0 12 chr4 131434650 131434731 -24195389 - ID4 SINE ID -3 80 1 8 1587 609 256 150 0 chr4 131434983 131435163 -24194957 - B3 SINE B2 -9 207 1 8 1587 364 285 8 70 chr4 131435353 131435479 -24194641 + PB1D10 SINE Alu 10 136 -13 8 1587 646 250 116 6 chr4 131435480 131435653 -24194467 - ID_B1 SINE B4 -27 197 6 8 1587 462 214 107 0 chr4 131435921 131436024 -24194096 + PB1D9 SINE Alu 7 120 0 8 1587 275 169 46 92 chr4 131436142 131436207 -24193913 + PB1 SINE Alu 56 117 -10 8 1587 555 271 23 33 chr4 131436278 131436443 -24193677 + ID_B1 SINE B4 82 246 -46 8 1587 518 271 68 0 chr4 131436982 131437115 -24193005 - RSINE1 SINE B4 -19 146 5 8 1587 480 224 30 30 chr4 131438491 131438592 -24191528 + B1_Mus2 SINE Alu 21 121 -26 8 1587 442 162 0 0 chr4 131438838 131438906 -24191214 + BC1_Mm scRNA scRNA 2 69 -83 8 1587 287 252 99 20 chr4 131438980 131439081 -24191039 - ORR1E LTR MaLR 0 359 251 8 1587 275 348 96 36 chr4 131440506 131440730 -24189390 + MIRb SINE MIR 13 249 -19 8 1587 237 256 97 32 chr4 131441337 131441430 -24188690 + MIR SINE MIR 20 118 -90 8 1587 274 360 53 35 chr4 131441956 131442126 -24187994 + MamSINE1 SINE tRNA 26 198 -92 8 1587 393 202 17 111 chr4 131443454 131443571 -24186549 + MT2B LTR ERVL 153 258 -343 8 1587 612 176 93 0 chr4 131443479 131443587 -24186533 + B1_Mus2 SINE Alu 11 128 -19 8 1587 212 284 81 0 chr4 131444038 131444112 -24186008 + MIR SINE MIR 112 191 -71 8 1587 521 193 36 27 chr4 131445214 131445326 -24184794 + PB1D9 SINE Alu 2 114 -6 8 1587 257 75 0 24 chr4 131445327 131445368 -24184752 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 8 1587 448 287 8 34 chr4 131445684 131445803 -24184317 + RSINE1 SINE B4 1 116 -49 8 1587 699 159 87 0 chr4 131445825 131445963 -24184157 + B2_Mm2 SINE B2 1 150 -45 8 1587 211 310 0 0 chr4 131446058 131446116 -24184004 + PB1D10 SINE Alu 47 104 -13 8 1587 22 0 0 0 chr4 131447789 131447811 -24182309 + AT_rich Low_complexity Low_complexity 1 22 0 8 1587 686 214 20 7 chr4 131448522 131448668 -24181452 + B1_Mur1 SINE Alu 2 149 0 8 1587 326 205 40 18 chr4 131448747 131448823 -24181297 + B3 SINE B2 49 125 -91 8 1587 279 0 0 0 chr4 131448852 131448883 -24181237 + (TAA)n Simple_repeat Simple_repeat 2 32 0 8 1587 707 160 8 0 chr4 131449242 131449367 -24180753 - B1_Mus2 SINE Alu -1 146 21 8 1587 307 261 10 71 chr4 131449462 131449561 -24180559 + B1_Mur3 SINE Alu 6 98 -51 8 1587 662 257 8 48 chr4 131449609 131449803 -24180317 + B3A SINE B2 20 216 0 8 1587 615 246 54 27 chr4 131449808 131449992 -24180128 + B3 SINE B2 11 199 -17 8 1587 455 227 143 0 chr4 131449989 131450108 -24180012 + B3 SINE B2 77 212 -4 8 1587 807 204 0 0 chr4 131450223 131450370 -24179750 - B1_Mus2 SINE Alu 0 147 1 8 1587 1114 50 0 0 chr4 131450387 131450527 -24179593 - B1_Mus1 SINE Alu -7 141 2 8 1587 386 311 74 93 chr4 131450833 131451049 -24179071 + B3 SINE B2 2 213 -3 8 1587 3432 20 0 0 chr4 131451269 131451665 -24178455 - MTA_Mm LTR MaLR 0 396 1 8 1587 9035 17 18 0 chr4 131451665 131452744 -24177376 - MTA_Mm-int LTR MaLR 0 1098 1 8 1587 3333 28 2 0 chr4 131452744 131453139 -24176981 - MTA_Mm LTR MaLR 0 396 1 8 1587 1511 52 5 0 chr4 131454064 131454255 -24175865 - B2_Mm1t SINE B2 -1 192 1 8 1587 347 178 176 65 chr4 131454290 131454398 -24175722 + PB1D9 SINE Alu 1 120 0 8 1587 215 200 18 18 chr4 131454479 131454535 -24175585 - L2b LINE L2 -75 3300 3245 8 1587 21 71 0 0 chr4 131455438 131455480 -24174640 + AT_rich Low_complexity Low_complexity 1 42 0 8 1587 685 231 44 0 chr4 131455487 131455647 -24174473 - B3 SINE B2 -22 194 28 8 1587 657 200 33 4 chr4 131455643 131455786 -24174334 - B3 SINE B2 -43 173 32 8 1587 655 176 42 0 chr4 131455826 131455945 -24174175 + B1_Mur1 SINE Alu 19 142 -7 8 1587 252 324 11 11 chr4 131456513 131456688 -24173432 + (CAG)n Simple_repeat Simple_repeat 2 176 0 8 1587 21 0 0 0 chr4 131457529 131457550 -24172570 + AT_rich Low_complexity Low_complexity 1 21 0 8 1587 548 137 256 0 chr4 131458363 131458480 -24171640 + B1_Mus1 SINE Alu 2 148 0 9 1587 435 229 159 34 chr4 131459353 131459376 -24170744 - B3A SINE B2 0 198 176 9 1587 1171 48 0 0 chr4 131459376 131459523 -24170597 - B1_Mm SINE Alu 0 147 1 9 1587 1290 56 84 0 chr4 131459529 131459708 -24170412 - B2_Mm2 SINE B2 0 195 2 9 1587 435 229 159 34 chr4 131459708 131459853 -24170267 - B3A SINE B2 -26 172 1 9 1587 269 356 95 14 chr4 131460517 131460665 -24169455 + RSINE1 SINE B4 2 161 -4 9 1587 216 299 0 43 chr4 131460681 131460699 -24169421 + ID_B1 SINE B4 79 143 -79 9 1587 233 240 0 0 chr4 131460699 131460749 -24169371 + B1F2 SINE Alu 13 62 -87 9 1587 212 352 43 11 chr4 131460837 131460929 -24169191 - RSINE1 SINE B4 -60 105 11 9 1587 256 243 28 14 chr4 131461250 131461321 -24168799 + L1MC LINE L1 2185 2256 -3890 9 1587 479 225 83 0 chr4 131461464 131461584 -24168536 + B1_Mur1 SINE Alu 2 131 -18 9 1587 302 217 71 14 chr4 131461620 131461690 -24168430 + B3A SINE B2 2 75 -123 9 1587 511 291 66 6 chr4 131461694 131461827 -24168293 + B3 SINE B2 18 161 -55 9 1587 789 178 200 0 chr4 131461827 131462012 -24168108 + URR1B DNA MER1_type 2 223 -2 9 1587 511 291 66 6 chr4 131462012 131462061 -24168059 + B3 SINE B2 162 211 -5 9 1587 1095 168 5 39 chr4 131462142 131462346 -24167774 + B3 SINE B2 4 200 -16 9 1587 337 250 11 22 chr4 131462384 131462474 -24167646 + RSINE1 SINE B4 41 129 -36 9 1587 22 0 0 0 chr4 131462725 131462747 -24167373 + AT_rich Low_complexity Low_complexity 1 22 0 9 1587 1474 62 5 0 chr4 131462770 131462962 -24167158 + B2_Mm1a SINE B2 1 193 0 9 1587 482 131 262 0 chr4 131462982 131463089 -24167031 + B1_Mus1 SINE Alu 6 140 -8 9 1587 241 248 161 0 chr4 131463104 131463241 -24166879 + L1MC LINE L1 3030 3188 -2958 9 1587 617 221 36 29 chr4 131463260 131463400 -24166720 - B1_Mur4 SINE Alu -5 145 5 9 1587 601 275 28 6 chr4 131463713 131463892 -24166228 + ID_B1 SINE B4 32 214 -10 9 1587 238 370 36 7 chr4 131463784 131463923 -24166197 - YREP_Mm Unknown Unknown -1516 296 154 9 1587 713 154 201 22 chr4 131463943 131464122 -24165998 - B3 SINE B2 -3 213 3 9 1587 615 162 42 17 chr4 131464822 131464941 -24165179 - MTD LTR MaLR -273 146 25 9 1587 189 107 0 0 chr4 131464951 131464979 -24165141 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1587 319 304 38 53 chr4 131464989 131465121 -24164999 + ID_B1 SINE B4 87 216 -8 9 1588 2154 91 50 0 chr4 131465220 131465560 -24164560 - IAPEY2_LTR LTR ERVK 0 357 1 9 1588 584 239 106 47 chr4 131465885 131466206 -24163914 + RLTR15 LTR ERVK 1 340 -19 9 1588 921 305 102 48 chr4 131466562 131467120 -24163000 - RMER15-int LTR ERVL -259 4740 4153 9 1588 604 56 22 0 chr4 131467348 131467437 -24162683 + B1_Mm SINE Alu 1 91 -56 9 1588 189 0 0 0 chr4 131467462 131467483 -24162637 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1588 1156 72 59 27 chr4 131467765 131467951 -24162169 + B2_Mm1t SINE B2 1 192 -1 9 1588 288 293 107 20 chr4 131468250 131468400 -24161720 - RMER15 LTR ERVL -11 564 402 9 1588 306 0 0 0 chr4 131468484 131468518 -24161602 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 9 1588 533 202 8 40 chr4 131468776 131468900 -24161220 - PB1D9 SINE Alu 0 120 1 9 1588 625 209 58 0 chr4 131468919 131469058 -24161062 - B1F SINE Alu -2 147 1 9 1588 700 284 91 61 chr4 131469066 131469396 -24160724 + MTEb LTR MaLR 31 370 -9 9 1588 443 247 0 0 chr4 131469877 131469970 -24160150 - B3 SINE B2 -54 162 70 9 1588 353 22 22 0 chr4 131470019 131470065 -24160055 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1588 291 135 0 0 chr4 131470669 131470710 -24159410 + (T)n Simple_repeat Simple_repeat 1 41 0 9 1588 1017 58 65 0 chr4 131470710 131470848 -24159272 - B1_Mm SINE Alu 0 147 1 9 1588 291 135 0 0 chr4 131470848 131470858 -24159262 + (T)n Simple_repeat Simple_repeat 1 10 0 9 1588 1456 48 5 0 chr4 131473682 131473868 -24156252 + B2_Mm1t SINE B2 1 187 -6 9 1588 230 291 0 12 chr4 131474294 131474374 -24155746 + MIR SINE MIR 51 129 -79 9 1588 186 322 102 25 chr4 131475163 131475281 -24154839 - MIR SINE MIR -34 228 102 9 1588 32 57 0 0 chr4 131476384 131476437 -24153683 + GC_rich Low_complexity Low_complexity 1 53 0 9 1588 206 146 0 24 chr4 131476444 131476486 -24153634 + G-rich Low_complexity Low_complexity 1 41 0 9 1588 21 57 0 0 chr4 131477227 131477262 -24152858 + GC_rich Low_complexity Low_complexity 1 35 0 9 1588 192 77 0 0 chr4 131477366 131477392 -24152728 + (CGGG)n Simple_repeat Simple_repeat 4 29 0 9 1588 232 299 131 41 chr4 131482867 131482989 -24147131 - MIR SINE MIR -33 229 97 9 1588 413 276 59 65 chr4 131483918 131484104 -24146016 - MIR3 SINE MIR -4 204 20 9 1588 290 197 118 0 chr4 131484219 131484295 -24145825 - PB1D10 SINE Alu 0 117 33 9 1588 461 206 49 0 chr4 131484952 131485054 -24145066 + PB1D10 SINE Alu 2 108 -9 9 1588 242 297 16 0 chr4 131485331 131485395 -24144725 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 9 1588 683 157 25 82 chr4 131485882 131486033 -24144087 + B3 SINE B2 1 155 -38 9 1588 221 158 0 0 chr4 131486009 131486047 -24144073 + B1_Mur2 SINE Alu 99 136 -13 9 1588 201 74 0 0 chr4 131486049 131486076 -24144044 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1588 560 214 76 8 chr4 131486088 131486220 -24143900 + B1_Mur2 SINE Alu 1 141 -8 9 1588 412 302 9 0 chr4 131486850 131486956 -24143164 - PB1 SINE Alu -20 107 1 9 1588 203 133 0 0 chr4 131487014 131487044 -24143076 + (G)n Simple_repeat Simple_repeat 1 30 0 9 1588 282 281 61 0 chr4 131487418 131487500 -24142620 - ID_B1 SINE B4 -16 208 122 9 1588 385 243 47 87 chr4 131487490 131487639 -24142481 - B1_Mm SINE Alu 0 147 5 9 1588 543 223 0 59 chr4 131487514 131487664 -24142456 - ID_B1 SINE B4 -19 205 69 9 1588 889 129 22 0 chr4 131487750 131487889 -24142231 + B1_Mur2 SINE Alu 1 142 -7 9 1588 306 267 61 2 chr4 131488127 131488283 -24141837 + L1M5 LINE L1 5638 5811 -548 9 1588 246 283 84 75 chr4 131488632 131488739 -24141381 - PB1D10 SINE Alu -8 109 2 9 1588 998 110 7 0 chr4 131488851 131488996 -24141124 - B1_Mus1 SINE Alu -1 147 2 9 1588 262 240 6 4 chr4 131489072 131489142 -24140978 - PB1D7 SINE Alu -54 73 1 9 1588 351 231 0 13 chr4 131489203 131489282 -24140838 - B4A SINE B4 0 292 215 9 1588 1588 36 0 0 chr4 131489290 131489482 -24140638 - B2_Mm1a SINE B2 0 193 2 9 1588 212 111 0 0 chr4 131489509 131489545 -24140575 - B1F2 SINE Alu -79 70 35 9 1588 895 261 13 30 chr4 131489564 131489797 -24140323 - B4A SINE B4 -62 230 2 9 1588 766 143 0 41 chr4 131489938 131490084 -24140036 + RLTR12A LTR ERVK 28 167 -401 9 1588 630 124 0 0 chr4 131490066 131490163 -24139957 - BC1_Mm scRNA scRNA -55 97 1 9 1588 1905 163 81 8 chr4 131490163 131490559 -24139561 + RLTR12A LTR ERVK 144 568 0 9 1588 235 209 116 42 chr4 131490614 131490709 -24139411 - L1MC LINE L1 -546 5787 5686 9 1588 180 111 0 0 chr4 131490758 131490785 -24139335 + (TTC)n Simple_repeat Simple_repeat 1 27 0 9 1588 214 314 47 9 chr4 131491511 131491617 -24138503 - PB1D10 SINE Alu -2 115 6 9 1588 195 235 0 0 chr4 131494051 131494102 -24136018 + (CATA)n Simple_repeat Simple_repeat 2 52 0 9 1588 214 317 119 0 chr4 131494761 131494862 -24135258 + MIRc SINE MIR 126 238 -30 9 1588 357 204 155 0 chr4 131495197 131495300 -24134820 - PB1D9 SINE Alu 0 120 2 9 1588 585 224 70 26 chr4 131495877 131496033 -24134087 - RSINE1 SINE B4 0 165 3 9 1588 436 196 19 38 chr4 131496138 131496244 -24133876 - B4 SINE B4 -123 169 66 9 1588 1014 80 141 6 chr4 131496473 131496636 -24133484 + B2_Mm1t SINE B2 1 185 -8 9 1588 272 330 88 9 chr4 131497177 131497190 -24132930 + B4 SINE B4 76 97 -195 9 1588 492 243 51 9 chr4 131497190 131497325 -24132795 + B1_Mur1 SINE Alu 3 136 -13 9 1588 213 39 0 0 chr4 131497325 131497351 -24132769 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1588 457 264 40 54 chr4 131497351 131497363 -24132757 + B1_Mur3 SINE Alu 137 148 -1 9 1588 474 227 31 0 chr4 131497431 131497528 -24132592 + ID_B1 SINE B4 117 216 -8 9 1588 242 181 67 24 chr4 131498249 131498332 -24131788 + PB1D10 SINE Alu 57 149 0 9 1588 305 231 25 13 chr4 131498647 131498726 -24131394 + ID4 SINE ID 3 82 -1 9 1588 414 0 0 0 chr4 131499081 131499127 -24130993 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1588 266 302 70 0 chr4 131499128 131499214 -24130906 - ID_B1 SINE B4 -132 92 1 9 1588 341 338 40 80 chr4 131499418 131499643 -24130477 - B4A SINE B4 -75 217 2 9 1588 887 165 30 74 chr4 131499646 131499849 -24130271 - B2_Mm2 SINE B2 0 195 2 9 1588 449 308 171 17 chr4 131500380 131500555 -24129565 - B4A SINE B4 -8 284 83 1 1588 1393 102 37 0 chr4 131500561 131500748 -24129372 - B2_Mm2 SINE B2 0 195 2 2 1588 271 271 0 0 chr4 131501951 131502010 -24128110 - ID4_ SINE ID 0 83 25 3 1588 503 234 125 0 chr4 131502426 131502554 -24127566 - B1F2 SINE Alu -1 148 5 4 1588 189 132 0 0 chr4 131503749 131503787 -24126333 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1588 508 198 52 104 chr4 131503927 131504119 -24126001 - B3A SINE B2 -16 182 1 6 1588 365 230 136 103 chr4 131504449 131504525 -24125595 + MER58B DNA MER1_type 13 85 -256 7 1588 1387 89 15 50 chr4 131504525 131504727 -24125393 - B2_Mm2 SINE B2 0 195 1 8 1588 365 230 136 103 chr4 131504727 131504805 -24125315 + MER58B DNA MER1_type 86 172 -169 7 1588 212 274 167 10 chr4 131505580 131505676 -24124444 - PB1D10 SINE Alu -6 111 1 9 1588 235 323 46 0 chr4 131506023 131506088 -24124032 - ID4 SINE ID -2 81 14 1 1588 495 48 0 0 chr4 131511686 131511748 -24118372 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1588 632 48 12 0 chr4 131512031 131512115 -24118005 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1588 361 255 117 10 chr4 131512672 131512775 -24117345 - PB1 SINE Alu 0 127 14 1 1588 243 0 0 0 chr4 131513911 131513938 -24116182 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1588 21 0 0 0 chr4 131514383 131514404 -24115716 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 930 212 88 32 chr4 131514424 131514673 -24115447 - B4 SINE B4 -23 269 7 1 1588 180 0 0 0 chr4 131515019 131515039 -24115081 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1588 354 286 92 0 chr4 131516975 131517073 -24113047 - ID_B1 SINE B4 -34 190 84 1 1588 243 258 78 49 chr4 131517167 131517269 -24112851 + PB1D7 SINE Alu 3 107 -13 1 1588 1585 21 35 65 chr4 131517715 131517914 -24112206 + B2_Mm1a SINE B2 1 193 0 2 1588 265 290 29 14 chr4 131517921 131517991 -24112129 + MIR SINE MIR 41 111 -151 2 1588 944 127 139 6 chr4 131518001 131518159 -24111961 + B2_Mm1t SINE B2 1 179 -14 2 1588 414 65 341 0 chr4 131518172 131518276 -24111844 + B2_Mm2 SINE B2 47 189 -6 2 1588 180 0 0 0 chr4 131518981 131519001 -24111119 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1588 246 95 0 0 chr4 131519652 131519694 -24110426 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1588 360 0 0 0 chr4 131520427 131520467 -24109653 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1588 296 240 13 39 chr4 131520470 131520548 -24109572 - RSINE1 SINE B4 -16 149 74 2 1588 457 198 163 20 chr4 131521510 131521608 -24108512 - PB1D10 SINE Alu -1 116 5 2 1588 610 245 107 4 chr4 131521787 131521977 -24108143 + Lx6 LINE L1 7229 7417 -43 2 1588 856 174 200 38 chr4 131521997 131522182 -24107938 + B3 SINE B2 1 215 -1 3 1588 462 282 19 17 chr4 131522222 131522343 -24107777 + PB1 SINE Alu 14 123 -26 3 1588 1267 78 49 22 chr4 131522523 131522706 -24107414 + B2_Mm2 SINE B2 2 189 -6 3 1588 1459 131 10 0 chr4 131523254 131523453 -24106667 + B3 SINE B2 2 202 -14 3 1588 249 33 0 0 chr4 131523454 131523484 -24106636 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1588 296 161 16 0 chr4 131524365 131524427 -24105693 + GA-rich Low_complexity Low_complexity 2 64 0 3 1588 1384 68 5 103 chr4 131524542 131524755 -24105365 + B2_Mm2 SINE B2 2 193 -2 3 1588 521 217 32 48 chr4 131524850 131524976 -24105144 + MER20 DNA MER1_type 1 124 -95 3 1588 362 277 0 0 chr4 131525122 131525205 -24104915 + ID4_ SINE ID 1 83 0 3 1588 626 211 0 47 chr4 131525325 131525454 -24104666 - B1_Mur4 SINE Alu -1 149 27 3 1588 1472 72 0 22 chr4 131525455 131525640 -24104480 + B2_Mm2 SINE B2 1 181 -14 4 1588 542 327 19 6 chr4 131525758 131525918 -24104202 - RSINE1 SINE B4 -3 162 1 4 1588 24 0 0 0 chr4 131526053 131526077 -24104043 + AT_rich Low_complexity Low_complexity 1 24 0 4 1588 1488 72 17 0 chr4 131526937 131527118 -24103002 + B2_Mm2 SINE B2 3 186 -9 4 1588 331 210 49 0 chr4 131527260 131527341 -24102779 - L1MB8 LINE L1 -1 6177 6093 4 1588 909 256 77 11 chr4 131527370 131527642 -24102478 + B4A SINE B4 2 291 -1 4 1588 870 186 197 0 chr4 131527833 131528021 -24102099 + URR1B DNA MER1_type 1 225 0 4 1588 203 316 0 0 chr4 131528021 131528072 -24102048 + MIR SINE MIR 208 258 -4 4 1588 692 231 56 46 chr4 131528123 131528318 -24101802 + B3A SINE B2 2 198 0 4 1588 895 150 244 17 chr4 131528415 131528591 -24101529 + B3 SINE B2 1 216 0 4 1588 882 172 7 0 chr4 131528674 131528819 -24101301 + B1_Mus2 SINE Alu 2 147 0 5 1588 462 114 0 0 chr4 131529023 131529093 -24101027 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1588 1183 79 54 6 chr4 131529096 131529262 -24100858 - B2_Mm2 SINE B2 -21 174 1 5 1588 232 374 162 14 chr4 131529262 131529625 -24100495 + L2a LINE L2 2569 2985 -434 5 1588 214 178 22 22 chr4 131529654 131529700 -24100420 + L4 LINE RTE 1968 2013 -16 5 1588 241 309 194 57 chr4 131529680 131530030 -24100090 + L2a LINE L2 3005 3402 -24 5 1588 490 193 87 94 chr4 131530159 131530308 -24099812 - B1_Mur1 SINE Alu 0 149 2 5 1588 382 306 36 0 chr4 131530414 131530525 -24099595 + PB1D10 SINE Alu 1 115 -2 5 1588 250 249 197 30 chr4 131531002 131531160 -24098960 - MIRb SINE MIR -33 235 46 5 1588 958 180 107 66 chr4 131531656 131531852 -24098268 + B3 SINE B2 1 204 -12 5 1588 33 43 0 0 chr4 131531852 131531899 -24098221 + AT_rich Low_complexity Low_complexity 1 47 0 5 1588 297 206 89 40 chr4 131532210 131532311 -24097809 - B1F1 SINE Alu 0 149 44 6 1588 223 209 179 0 chr4 131532733 131532800 -24097320 - MIRc SINE MIR -123 145 67 6 1588 290 347 61 0 chr4 131532926 131533073 -24097047 + L2a LINE L2 3256 3411 -15 6 1588 423 174 29 58 chr4 131533074 131533178 -24096942 + PB1D9 SINE Alu 12 112 -8 6 1588 386 260 0 0 chr4 131533497 131533570 -24096550 + B3A SINE B2 10 82 -116 6 1588 223 308 50 158 chr4 131533570 131533636 -24096484 + RSINE1 SINE B4 11 134 -31 6 1588 226 316 53 0 chr4 131533683 131533759 -24096361 + B3A SINE B2 103 182 -16 6 1588 721 91 43 0 chr4 131533768 131533986 -24096134 + (CA)n Simple_repeat Simple_repeat 1 227 0 6 1588 1538 70 16 0 chr4 131534041 131534215 -24095905 + B2_Mm2 SINE B2 2 178 -17 6 1588 405 102 0 0 chr4 131534215 131534274 -24095846 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1588 1538 70 16 0 chr4 131534274 131534286 -24095834 + B2_Mm2 SINE B2 179 190 -5 6 1588 358 265 0 75 chr4 131534561 131534667 -24095453 - PB1D10 SINE Alu -19 98 1 6 1588 547 222 96 7 chr4 131535066 131535202 -24094918 + RSINE1 SINE B4 4 151 -14 7 1588 23 33 0 0 chr4 131535332 131535362 -24094758 + AT_rich Low_complexity Low_complexity 1 30 0 7 1588 21 57 0 0 chr4 131535625 131535660 -24094460 + AT_rich Low_complexity Low_complexity 1 35 0 7 1588 438 252 84 0 chr4 131535694 131535801 -24094319 - RSINE1 SINE B4 -6 159 44 7 1588 216 354 71 30 chr4 131536266 131536365 -24093755 - L3 LINE CR1 -140 4349 4247 7 1588 1163 203 32 9 chr4 131536439 131536658 -24093462 - ID_B1 SINE B4 0 224 1 7 1588 228 292 138 55 chr4 131536898 131537043 -24093077 + MER5A DNA MER1_type 2 158 -31 7 1588 514 242 115 19 chr4 131536928 131537084 -24093036 - MER5A DNA MER1_type -18 171 1 7 1588 441 239 62 27 chr4 131537451 131537563 -24092557 + PB1D10 SINE Alu 1 116 -1 7 1588 350 198 151 0 chr4 131537590 131537676 -24092444 - PB1D7 SINE Alu -21 99 1 7 1588 293 204 55 200 chr4 131537756 131537789 -24092331 - PB1D10 SINE Alu -18 99 71 7 1588 839 197 125 21 chr4 131537789 131537981 -24092139 - B3 SINE B2 -4 212 1 8 1588 293 204 55 200 chr4 131537981 131538057 -24092063 - PB1D10 SINE Alu -47 70 6 7 1588 1000 116 20 7 chr4 131538096 131538244 -24091876 + B1_Mur4 SINE Alu 1 150 0 8 1588 225 160 20 20 chr4 131539876 131539927 -24090193 + MIRc SINE MIR 186 236 -32 8 1588 237 320 102 10 chr4 131540015 131540113 -24090007 + PB1D10 SINE Alu 1 107 -10 8 1588 1130 95 0 0 chr4 131540148 131540296 -24089824 - ORR1A2 LTR MaLR -58 269 122 8 1588 823 168 51 7 chr4 131540548 131540686 -24089434 - B1_Mus2 SINE Alu -1 146 3 8 1588 288 313 113 0 chr4 131540771 131540886 -24089234 - L1MC4 LINE L1 -190 7852 7725 8 1588 210 108 54 0 chr4 131540981 131541018 -24089102 - B4 SINE B4 -253 39 1 8 1588 269 139 0 0 chr4 131541265 131541308 -24088812 - ID4 SINE ID -39 44 2 8 1588 313 262 73 27 chr4 131541355 131541465 -24088655 - L1MC4 LINE L1 -1039 7003 6889 8 1588 292 282 79 35 chr4 131541503 131541617 -24088503 - L1MC4 LINE L1 -1396 6646 6528 8 1588 1486 156 146 23 chr4 131541968 131542269 -24087851 + ORR1C2 LTR MaLR 1 338 -46 8 1588 560 235 15 29 chr4 131542689 131542825 -24087295 - ID_B1 SINE B4 -1 223 90 9 1588 378 317 106 0 chr4 131542863 131543005 -24087115 - MIRb SINE MIR -48 220 64 9 1588 180 0 0 0 chr4 131543116 131543136 -24086984 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 9 1588 656 109 0 0 chr4 131543136 131543228 -24086892 - B2_Mm1t SINE B2 -20 173 82 9 1588 396 21 0 0 chr4 131543230 131543277 -24086843 - B2_Mm2 SINE B2 -148 47 1 9 1588 232 199 142 35 chr4 131543277 131543414 -24086706 - Charlie1a DNA MER1_type -64 1391 1240 9 1588 204 40 0 0 chr4 131543471 131543496 -24086624 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1588 830 223 80 139 chr4 131543535 131543837 -24086283 - B4 SINE B4 -3 289 6 9 1588 527 246 65 101 chr4 131543829 131543979 -24086141 - Charlie1a DNA MER1_type -476 979 838 9 1588 837 180 36 7 chr4 131543979 131544119 -24086001 - B1_Mus2 SINE Alu -2 145 2 9 1588 527 246 65 101 chr4 131544119 131544243 -24085877 - Charlie1a DNA MER1_type -618 837 715 9 1588 259 241 35 0 chr4 131544252 131544310 -24085810 + ID_B1 SINE B4 90 149 -75 9 1588 641 310 0 7 chr4 131544412 131544558 -24085562 - RSINE1 SINE B4 -19 146 2 1 1588 396 216 0 102 chr4 131545237 131545335 -24084785 - MIRb SINE MIR 0 268 181 1 1588 267 268 0 0 chr4 131545447 131545519 -24084601 - MIRc SINE MIR -121 155 84 1 1588 444 200 169 99 chr4 131546350 131546522 -24083598 - B3A SINE B2 -2 196 13 1 1588 223 222 20 118 chr4 131546812 131546914 -24083206 + (GTATG)n Simple_repeat Simple_repeat 1 92 0 1 1588 300 271 16 32 chr4 131547590 131547716 -24082404 + L1MC4 LINE L1 7914 8037 -5 1 1588 252 0 0 0 chr4 131547785 131547813 -24082307 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1588 775 271 52 0 chr4 131547815 131547970 -24082150 - B3A SINE B2 -33 165 3 1 1588 760 154 307 6 chr4 131547994 131548157 -24081963 - B3 SINE B2 -4 212 1 1 1588 627 274 77 70 chr4 131548201 131548460 -24081660 + B4A SINE B4 32 292 0 1 1588 531 128 0 0 chr4 131549134 131549220 -24080900 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1588 387 0 0 0 chr4 131549221 131549264 -24080856 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1588 1137 231 72 89 chr4 131549582 131550085 -24080035 + RLTR12B LTR ERVK 2 500 -27 1 1588 505 246 65 243 chr4 131550484 131550838 -24079282 + B4 SINE B4 2 292 0 1 1588 387 0 0 0 chr4 131550863 131550906 -24079214 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1588 221 146 0 20 chr4 131551084 131551133 -24078987 + GA-rich Low_complexity Low_complexity 3 50 0 1 1588 487 286 90 28 chr4 131551573 131551717 -24078403 + RSINE1 SINE B4 12 164 -1 1 1588 197 33 0 32 chr4 131552060 131552091 -24078029 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1588 252 314 11 44 chr4 131552489 131552579 -24077541 - Tigger7 DNA MER2_type -1 2490 2404 1 1588 853 289 64 18 chr4 131552578 131552860 -24077260 - Tigger7 DNA MER2_type -2085 406 112 1 1588 186 308 32 32 chr4 131553651 131553745 -24076375 + MIR SINE MIR 83 176 -86 1 1588 194 302 0 19 chr4 131553890 131553944 -24076176 + L2b LINE L2 3319 3371 -4 1 1588 826 238 7 13 chr4 131554163 131554312 -24075808 - B1_Mur1 SINE Alu 0 149 2 1 1588 207 157 0 0 chr4 131554438 131554489 -24075631 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1588 555 262 24 8 chr4 131554811 131554938 -24075182 + RSINE1 SINE B4 8 136 -29 1 1588 1143 128 192 11 chr4 131555182 131555364 -24074756 + B3 SINE B2 2 216 0 1 1588 219 103 0 0 chr4 131555958 131555997 -24074123 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1588 1209 226 232 17 chr4 131556698 131557127 -24072993 + RLTR11A2 LTR ERVK 1 527 0 1 1588 603 214 15 22 chr4 131558022 131558156 -24071964 + ID_B1 SINE B4 85 217 -7 1 1588 261 0 0 0 chr4 131558650 131558679 -24071441 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1588 596 309 52 16 chr4 131558679 131558873 -24071247 - B3 SINE B2 -13 203 3 1 1588 210 253 125 88 chr4 131559058 131559218 -24070902 - B4A SINE B4 -118 174 9 1 1588 1307 37 0 0 chr4 131560274 131560438 -24069682 - B2_Mm2 SINE B2 -31 164 1 1 1588 222 250 18 0 chr4 131560525 131560581 -24069539 - B1_Mus1 SINE Alu -70 78 22 1 1588 196 224 20 39 chr4 131560945 131560996 -24069124 + L2b LINE L2 3325 3374 -1 1 1588 249 139 0 0 chr4 131560997 131561040 -24069080 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1 1588 646 158 30 8 chr4 131561071 131561205 -24068915 + B1_Mur2 SINE Alu 6 142 -7 1 1588 240 163 0 0 chr4 131561206 131561249 -24068871 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1588 297 196 0 0 chr4 131561281 131561337 -24068783 + B4 SINE B4 1 56 -236 1 1588 465 19 0 0 chr4 131561420 131561474 -24068646 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1588 485 282 42 77 chr4 131561487 131561737 -24068383 - B4A SINE B4 -19 273 12 1 1588 493 333 0 0 chr4 131562175 131562328 -24067792 + RSINE1 SINE B4 11 163 -2 1 1588 232 297 91 57 chr4 131562328 131562350 -24067770 + B2_Mm2 SINE B2 10 190 -5 1 1588 1241 54 139 0 chr4 131563588 131563754 -24066366 + B2_Mm2 SINE B2 2 190 -5 1 1588 186 71 0 0 chr4 131564605 131564633 -24065487 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 1588 702 232 6 41 chr4 131564634 131564805 -24065315 - B3A SINE B2 -31 167 3 1 1588 1265 247 17 10 chr4 131564892 131565182 -24064938 - B4A SINE B4 0 292 1 1 1588 211 125 20 40 chr4 131565201 131565227 -24064893 + T-rich Low_complexity Low_complexity 27 51 0 1 1588 938 135 0 33 chr4 131565227 131565380 -24064740 - B1_Mur2 SINE Alu -1 148 1 1 1588 211 125 20 40 chr4 131565380 131565403 -24064717 + T-rich Low_complexity Low_complexity 3 26 0 1 1588 591 237 25 0 chr4 131565413 131565531 -24064589 - RSINE1 SINE B4 -34 131 11 1 1588 21 36 0 0 chr4 131565538 131565566 -24064554 + AT_rich Low_complexity Low_complexity 1 28 0 1 1588 523 179 148 39 chr4 131567160 131567288 -24062832 + B1_Mus2 SINE Alu 5 146 -1 1 1588 250 47 70 0 chr4 131567302 131567345 -24062775 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1588 624 222 8 8 chr4 131567356 131567483 -24062637 - ID_B1 SINE B4 -7 217 91 1 1588 22 0 0 0 chr4 131567492 131567514 -24062606 + AT_rich Low_complexity Low_complexity 1 22 0 1 1588 21 0 0 0 chr4 131568743 131568764 -24061356 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 534 235 0 42 chr4 131569314 131569434 -24060686 + PB1D10 SINE Alu 3 117 0 1 1588 544 111 0 0 chr4 131569561 131569642 -24060478 + ORR1A4 LTR MaLR 241 321 -8 1 1588 379 114 52 9 chr4 131569731 131569846 -24060274 + A-rich Low_complexity Low_complexity 6 125 0 1 1588 272 264 144 40 chr4 131570373 131570547 -24059573 - Tigger15a DNA TcMar -56 659 468 1 1588 286 107 0 0 chr4 131570596 131570652 -24059468 - B2_Mm1t SINE B2 0 193 138 1 1588 1336 100 0 16 chr4 131570725 131570908 -24059212 - B2_Mm2 SINE B2 -14 181 2 1 1588 898 250 185 6 chr4 131571267 131571613 -24058507 - MTD LTR MaLR 0 419 12 1 1588 207 0 0 0 chr4 131571620 131571643 -24058477 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1588 549 170 125 0 chr4 131571678 131571790 -24058330 + B3 SINE B2 6 131 -85 1 1588 883 151 7 7 chr4 131571800 131571947 -24058173 - B1_Mur4 SINE Alu -2 148 2 1 1588 21 0 0 0 chr4 131571947 131571968 -24058152 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 293 236 0 27 chr4 131571975 131572049 -24058071 + B1_Mur2 SINE Alu 78 149 0 1 1588 198 0 0 0 chr4 131572061 131572083 -24058037 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1588 21 0 0 0 chr4 131573539 131573560 -24056560 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 463 231 16 93 chr4 131573562 131573691 -24056429 + PB1D9 SINE Alu 2 120 0 1 1588 421 205 189 80 chr4 131573725 131573761 -24056359 + B3A SINE B2 5 33 -165 1 1588 1187 76 111 0 chr4 131573761 131573932 -24056188 - B2_Mm2 SINE B2 -5 190 1 1 1588 421 205 189 80 chr4 131573932 131574070 -24056050 + B3A SINE B2 34 198 0 1 1588 696 174 53 0 chr4 131574524 131574656 -24055464 + B1_Mur4 SINE Alu 11 149 -1 1 1588 441 278 51 88 chr4 131574668 131574964 -24055156 + MTEa LTR MaLR 1 285 -94 1 1588 23 0 0 0 chr4 131575108 131575131 -24054989 + AT_rich Low_complexity Low_complexity 1 23 0 1 1588 398 214 133 0 chr4 131575466 131575564 -24054556 - PB1D9 SINE Alu -5 115 5 1 1588 503 273 91 0 chr4 131575666 131575820 -24054300 + B3A SINE B2 1 168 -30 1 1588 671 223 206 24 chr4 131576095 131576265 -24053855 + B3 SINE B2 3 203 -13 1 1588 22 0 0 0 chr4 131576266 131576288 -24053832 + AT_rich Low_complexity Low_complexity 1 22 0 1 1588 334 324 18 18 chr4 131576407 131576517 -24053603 + B4A SINE B4 10 119 -173 1 1588 414 0 0 0 chr4 131576835 131576881 -24053239 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1588 328 292 81 30 chr4 131576959 131577058 -24053062 + PB1D10 SINE Alu 1 104 -13 1 1588 409 236 137 61 chr4 131577125 131577337 -24052783 + L1M4 LINE L1 5463 5690 -484 1 1588 227 94 0 0 chr4 131577337 131577369 -24052751 + B1F1 SINE Alu 92 123 -26 1 1588 1153 62 0 14 chr4 131577540 131577687 -24052433 + B1_Mus2 SINE Alu 3 147 0 1 1588 943 174 96 10 chr4 131578050 131578247 -24051873 + B3 SINE B2 3 216 0 1 1588 853 144 45 7 chr4 131578679 131578833 -24051287 + B3 SINE B2 57 216 0 1 1588 317 198 136 0 chr4 131579322 131579403 -24050717 - ID_B1 SINE B4 -41 183 92 1 1588 400 226 40 99 chr4 131579414 131579566 -24050554 + L1MA5 LINE L1 6153 6295 -5 1 1588 534 250 21 86 chr4 131579683 131579823 -24050297 + B1_Mur2 SINE Alu 4 134 -15 1 1588 915 143 132 0 chr4 131579823 131580005 -24050115 + ORR1B1 LTR MaLR 2 207 -187 1 1588 361 43 0 0 chr4 131580012 131580059 -24050061 - ORR1B1 LTR MaLR -8 386 340 1 1588 1096 66 0 0 chr4 131580076 131580213 -24049907 - B1_Mus1 SINE Alu -10 138 2 1 1588 302 224 151 25 chr4 131580217 131580336 -24049784 - B3A SINE B2 0 198 65 1 1588 452 190 0 0 chr4 131580864 131580960 -24049160 + B3 SINE B2 9 104 -91 1 1588 2549 123 60 25 chr4 131580960 131581444 -24048676 + RLTR11A2 LTR ERVK 2 502 -25 1 1588 22 0 0 0 chr4 131582150 131582172 -24047948 + AT_rich Low_complexity Low_complexity 1 22 0 1 1588 383 232 62 10 chr4 131582195 131582291 -24047829 + RSINE1 SINE B4 27 127 -38 1 1588 252 0 0 0 chr4 131582299 131582327 -24047793 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1588 1293 27 0 0 chr4 131582684 131582832 -24047288 - B1_Mus1 SINE Alu 0 148 1 2 1588 456 85 36 24 chr4 131582833 131582917 -24047203 - L1Md_F2 LINE L1 -2 6580 6496 2 1588 489 243 72 0 chr4 131583158 131583269 -24046851 + RSINE1 SINE B4 4 122 -43 2 1588 364 222 144 0 chr4 131583327 131583417 -24046703 + PB1D9 SINE Alu 11 113 -7 2 1588 207 0 0 0 chr4 131583490 131583513 -24046607 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1588 511 208 9 9 chr4 131583551 131583658 -24046462 - PB1D10 SINE Alu -3 114 8 2 1588 218 270 26 51 chr4 131584115 131584193 -24045927 - MER5A DNA MER1_type 0 189 114 2 1588 181 283 0 48 chr4 131584138 131584201 -24045919 + MER5A DNA MER1_type 35 94 -95 2 1588 284 316 84 0 chr4 131584265 131584420 -24045700 + MER5A DNA MER1_type 18 185 -4 2 1588 399 276 25 33 chr4 131584744 131584774 -24045346 + PB1D7 SINE Alu 2 34 -86 2 1588 3046 55 5 43 chr4 131584774 131585190 -24044930 + MTB LTR MaLR 1 400 0 2 1588 399 276 25 33 chr4 131585190 131585279 -24044841 + PB1D7 SINE Alu 35 119 -1 2 1588 255 247 112 43 chr4 131585366 131585527 -24044593 + L1MC5 LINE L1 7451 7622 -339 2 1588 232 292 33 22 chr4 131585673 131585695 -24044425 - B4 SINE B4 -192 100 9 2 1588 240 279 0 14 chr4 131585695 131585764 -24044356 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 2 1588 337 237 210 30 chr4 131585799 131585899 -24044221 + PB1D9 SINE Alu 3 120 0 2 1588 180 0 0 0 chr4 131585899 131585919 -24044201 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1588 293 284 78 16 chr4 131585956 131586085 -24044035 + L1MC5 LINE L1 7729 7865 -96 2 1588 994 122 7 0 chr4 131586579 131586726 -24043394 - B1_Mur4 SINE Alu -2 148 1 2 1588 273 192 246 16 chr4 131586914 131587036 -24043084 + L1ME4a LINE L1 5975 6124 0 2 1588 1067 147 21 16 chr4 131588156 131588343 -24041777 - B2_Mm2 SINE B2 -7 188 1 2 1588 705 260 29 19 chr4 131588516 131588724 -24041396 + B3 SINE B2 1 210 -6 2 1588 802 10 0 19 chr4 131588785 131588890 -24041230 - B1_Mus2 SINE Alu 0 147 45 2 1588 375 277 164 30 chr4 131588935 131589069 -24041051 - RSINE1 SINE B4 -12 153 2 2 1588 260 226 0 0 chr4 131589125 131589178 -24040942 - PB1 SINE Alu -28 99 47 2 1588 1036 112 71 27 chr4 131589220 131589403 -24040717 - B2_Mm2 SINE B2 -4 191 1 2 1588 305 264 56 9 chr4 131589569 131589676 -24040444 - PB1D10 SINE Alu -5 112 1 2 1588 22 56 0 0 chr4 131591004 131591040 -24039080 + AT_rich Low_complexity Low_complexity 1 36 0 2 1588 1148 54 0 20 chr4 131591415 131591565 -24038555 - B1_Mus1 SINE Alu 0 148 2 2 1588 3329 57 2 22 chr4 131591566 131591979 -24038141 + MTB_Mm LTR MaLR 3 407 0 2 1588 1020 141 0 7 chr4 131592166 131592316 -24037804 + B1_Mur4 SINE Alu 2 150 0 2 1588 793 238 19 56 chr4 131592328 131592516 -24037604 + B3 SINE B2 1 183 -33 2 1588 1304 213 149 33 chr4 131592516 131592851 -24037269 + ORR1D1 LTR MaLR 1 374 0 2 1588 793 238 19 56 chr4 131592851 131592876 -24037244 + B3 SINE B2 184 206 -10 2 1588 337 293 20 0 chr4 131593035 131593134 -24036986 + ID_B1 SINE B4 124 224 0 2 1588 913 155 0 45 chr4 131593395 131593550 -24036570 + B1_Mur3 SINE Alu 1 148 -1 2 1588 601 282 208 5 chr4 131593882 131594089 -24036031 + MER21B LTR ERV1 52 300 -563 2 1588 292 290 0 0 chr4 131594475 131594544 -24035576 + ID4_ SINE ID 3 71 -12 2 1588 437 214 188 0 chr4 131595233 131595350 -24034770 + B1_Mur2 SINE Alu 5 143 -6 2 1588 854 277 45 45 chr4 131595469 131595734 -24034386 + B4A SINE B4 20 284 -8 2 1588 227 54 27 0 chr4 131595737 131595774 -24034346 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1588 437 181 0 41 chr4 131595790 131595888 -24034232 + B1_Mur3 SINE Alu 2 95 -54 2 1589 327 234 111 9 chr4 131596639 131596747 -24033373 + RSINE1 SINE B4 16 134 -31 2 1589 285 29 0 0 chr4 131596768 131596802 -24033318 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1589 920 135 0 0 chr4 131596841 131596974 -24033146 + B1_Mur4 SINE Alu 1 133 -17 2 1589 189 0 0 0 chr4 131597035 131597056 -24033064 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1589 240 35 0 0 chr4 131597056 131597085 -24033035 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1589 518 254 0 16 chr4 131597095 131597219 -24032901 + ID_B1 SINE B4 83 204 -20 2 1589 228 313 60 0 chr4 131597507 131597590 -24032530 + MIRc SINE MIR 72 159 -109 2 1589 219 288 126 23 chr4 131597759 131597933 -24032187 - MIR SINE MIR -66 196 5 2 1589 225 148 74 0 chr4 131598325 131598379 -24031741 + LTR40b LTR ERVL 361 418 -44 2 1589 519 304 96 8 chr4 131598599 131598962 -24031158 + L1MC4 LINE L1 7213 7495 -547 2 1589 431 241 107 50 chr4 131599061 131599201 -24030919 + RSINE1 SINE B4 6 153 -12 2 1589 468 0 0 0 chr4 131599259 131599311 -24030809 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 2 1589 255 241 25 0 chr4 131600486 131600565 -24029555 + B4A SINE B4 4 84 -208 2 1589 1087 189 48 0 chr4 131600968 131601174 -24028946 + B3 SINE B2 1 216 0 2 1589 262 357 111 50 chr4 131601203 131601383 -24028737 + MamRep1879 DNA hAT? 12 202 -14 2 1589 21 0 0 0 chr4 131601466 131601487 -24028633 + AT_rich Low_complexity Low_complexity 1 21 0 2 1589 588 160 329 31 chr4 131602366 131602527 -24027593 + B3 SINE B2 1 209 -7 2 1589 995 214 5 9 chr4 131602835 131603047 -24027073 + B3 SINE B2 1 211 -5 2 1589 510 300 23 0 chr4 131603076 131603206 -24026914 + B1F SINE Alu 9 141 -8 2 1589 687 137 112 22 chr4 131603311 131603445 -24026675 + B1_Mur4 SINE Alu 5 150 0 2 1589 255 238 16 0 chr4 131603447 131603510 -24026610 + GA-rich Low_complexity Low_complexity 3 66 0 2 1589 258 32 0 0 chr4 131603784 131603815 -24026305 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2 1589 24 100 0 0 chr4 131604690 131604770 -24025350 + GC_rich Low_complexity Low_complexity 1 80 0 2 1589 303 96 0 0 chr4 131604930 131604982 -24025138 + (CGAG)n Simple_repeat Simple_repeat 2 53 0 2 1589 47 19 0 0 chr4 131605023 131605077 -24025043 + GC_rich Low_complexity Low_complexity 1 54 0 2 1589 23 0 0 0 chr4 131605127 131605150 -24024970 + GC_rich Low_complexity Low_complexity 1 23 0 2 1589 212 122 24 0 chr4 131605214 131605255 -24024865 + (GGGGA)n Simple_repeat Simple_repeat 5 46 0 2 1589 243 0 0 0 chr4 131605423 131605450 -24024670 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1589 245 178 234 43 chr4 131605505 131605599 -24024521 + MIR3 SINE MIR 91 202 -6 2 1589 189 290 14 14 chr4 131606070 131606140 -24023980 + MIR SINE MIR 23 92 -170 2 1589 634 250 0 29 chr4 131606147 131606320 -24023800 + ID_B1 SINE B4 54 221 -3 2 1589 245 255 0 97 chr4 131606334 131606447 -24023673 + MIR SINE MIR 158 259 -3 2 1589 381 250 7 93 chr4 131608237 131608387 -24021733 - B1F1 SINE Alu -1 148 12 2 1589 842 232 65 78 chr4 131608778 131609072 -24021048 - B4A SINE B4 -2 290 1 2 1589 393 117 0 0 chr4 131609094 131609154 -24020966 + (CTG)n Simple_repeat Simple_repeat 3 62 0 2 1589 384 158 66 0 chr4 131609155 131609231 -24020889 - PB1D9 SINE Alu -7 113 33 2 1589 217 119 0 45 chr4 131609243 131609287 -24020833 + T-rich Low_complexity Low_complexity 4 45 0 2 1589 267 291 112 0 chr4 131609353 131609487 -24020633 - L1M5 LINE L1 -330 5794 5646 2 1589 934 198 5 66 chr4 131609643 131609854 -24020266 + B3A SINE B2 1 198 0 2 1589 631 191 96 0 chr4 131609863 131609999 -24020121 + B3A SINE B2 2 150 -48 2 1589 216 67 0 0 chr4 131610004 131610034 -24020086 + (CATA)n Simple_repeat Simple_repeat 1 30 0 2 1589 431 32 79 0 chr4 131610067 131610130 -24019990 + L1_Mus1 LINE L1 6499 6566 -1 2 1589 896 159 28 0 chr4 131610193 131610338 -24019782 + B1_Mur2 SINE Alu 1 149 0 2 1589 654 147 51 17 chr4 131610344 131610462 -24019658 - B1_Mus1 SINE Alu -16 132 11 2 1589 1295 177 67 42 chr4 131610466 131610826 -24019294 - RCHARR1 DNA MER1_type -120 854 486 2 1589 210 136 0 0 chr4 131610854 131610898 -24019222 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1589 753 243 22 73 chr4 131610945 131611220 -24018900 - B4A SINE B4 -31 261 1 2 1589 260 219 0 0 chr4 131611220 131611283 -24018837 - RCHARR1 DNA MER1_type -477 497 435 2 1589 394 195 12 0 chr4 131611296 131611378 -24018742 - B1F2 SINE Alu -62 87 5 2 1589 1330 315 72 2 chr4 131611388 131611802 -24018318 - RCHARR1 DNA MER1_type -529 445 3 2 1589 627 290 35 0 chr4 131611802 131611941 -24018179 + RSINE1 SINE B4 17 160 -5 2 1589 351 0 0 0 chr4 131611941 131611980 -24018140 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2 1589 208 377 98 0 chr4 131612031 131612153 -24017967 - MIR3 SINE MIR -37 171 38 2 1589 249 300 165 29 chr4 131612256 131612359 -24017761 + PB1D10 SINE Alu 1 117 0 2 1589 271 145 0 84 chr4 131612424 131612507 -24017613 + Lx4B LINE L1 6978 7053 -5 2 1589 386 281 45 38 chr4 131612540 131612673 -24017447 + ID_B1 SINE B4 91 224 0 2 1589 278 200 0 0 chr4 131612692 131612737 -24017383 + ID4_ SINE ID 20 64 -19 2 1589 301 239 99 0 chr4 131612782 131612853 -24017267 + ID4 SINE ID 2 79 -4 2 1589 180 77 0 0 chr4 131612855 131612881 -24017239 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1589 338 304 36 38 chr4 131613026 131613211 -24016909 - MIRb SINE MIR -6 262 79 2 1589 315 204 259 0 chr4 131613309 131613417 -24016703 + LTR48B LTR ERV1 1 136 -508 2 1589 2280 138 72 40 chr4 131614030 131614477 -24015643 - RMER4A LTR ERVK 0 466 6 2 1589 322 318 0 0 chr4 131614525 131614610 -24015510 + RSINE1 SINE B4 43 127 -38 2 1589 230 259 156 64 chr4 131614830 131615003 -24015117 - MLT1B LTR MaLR -105 285 70 2 1589 357 268 24 24 chr4 131615184 131615268 -24014852 - B1_Mus1 SINE Alu -60 88 5 2 1589 229 284 0 51 chr4 131615207 131615285 -24014835 + YREP_Mm Unknown Unknown 255 328 -1484 3 1589 984 222 40 5 chr4 131615304 131615503 -24014617 + B3 SINE B2 1 206 -10 3 1589 500 263 64 41 chr4 131615520 131615714 -24014406 - B3A SINE B2 0 216 23 3 1589 554 215 25 0 chr4 131615734 131615855 -24014265 - B1_Mur1 SINE Alu -1 148 25 3 1589 240 313 43 58 chr4 131615777 131615916 -24014204 - MT2B2 LTR ERVL -327 257 121 3 1589 256 296 12 0 chr4 131616026 131616107 -24014013 + MIR3 SINE MIR 9 90 -118 3 1589 234 315 122 12 chr4 131616148 131616312 -24013808 - MIRb SINE MIR -39 229 48 3 1589 188 274 208 8 chr4 131616405 131616530 -24013590 - MIRc SINE MIR -117 151 2 3 1589 333 0 0 0 chr4 131616670 131616707 -24013413 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1589 660 296 84 86 chr4 131616707 131616834 -24013286 + RLTR12B LTR ERVK 22 136 -392 3 1589 1378 75 17 0 chr4 131616834 131617008 -24013112 + B2_Mm2 SINE B2 5 181 -14 3 1589 660 296 84 86 chr4 131617008 131617357 -24012763 + RLTR12B LTR ERVK 137 497 -31 3 1589 182 37 37 0 chr4 131617399 131617426 -24012694 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1589 213 39 0 0 chr4 131617461 131617487 -24012633 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1589 500 311 20 13 chr4 131617490 131617640 -24012480 - B3A SINE B2 -44 154 4 3 1589 315 250 0 0 chr4 131617654 131617726 -24012394 - ID4 SINE ID -11 72 1 3 1589 1262 41 0 0 chr4 131617750 131617895 -24012225 - B1_Mm SINE Alu 0 147 3 3 1589 401 298 148 53 chr4 131618533 131618742 -24011378 - L2a LINE L2 -1 3425 3197 3 1589 864 199 0 0 chr4 131618788 131618929 -24011191 + B1_Mur2 SINE Alu 5 145 -4 3 1589 511 202 240 0 chr4 131618973 131619102 -24011018 - B3A SINE B2 -31 167 8 3 1589 225 376 97 21 chr4 131619113 131619257 -24010863 - L2a LINE L2 -254 3172 3018 3 1589 721 72 39 13 chr4 131619741 131619895 -24010225 + (TTA)n Simple_repeat Simple_repeat 3 160 0 3 1589 1123 186 29 10 chr4 131619904 131620110 -24010010 - B3 SINE B2 -5 211 2 3 1589 1054 212 4 62 chr4 131620121 131620347 -24009773 - ID_B1 SINE B4 -10 214 2 3 1589 622 248 29 0 chr4 131620793 131620930 -24009190 + B1F1 SINE Alu 1 141 -8 3 1589 594 261 69 93 chr4 131620945 131621236 -24008884 + B4A SINE B4 1 284 -8 3 1589 1233 41 7 0 chr4 131621379 131621525 -24008595 + B1_Mus1 SINE Alu 2 148 0 3 1589 423 239 28 0 chr4 131621545 131621651 -24008469 + PB1D7 SINE Alu 11 119 -1 3 1589 297 293 60 54 chr4 131622383 131622549 -24007571 - MIR SINE MIR -71 191 25 3 1589 208 342 102 36 chr4 131622693 131622860 -24007260 + L2c LINE L2 2911 3088 -287 3 1589 192 308 28 37 chr4 131623849 131623957 -24006163 + L2c LINE L2 3249 3355 -20 3 1589 680 224 181 55 chr4 131624166 131624365 -24005755 - MIRb SINE MIR -10 258 35 3 1589 892 244 14 36 chr4 131624428 131624649 -24005471 + B3 SINE B2 1 216 0 3 1589 549 0 0 0 chr4 131624880 131624941 -24005179 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1589 1008 115 111 18 chr4 131624975 131625173 -24004947 + B2_Mm2 SINE B2 9 216 0 3 1589 181 318 108 78 chr4 131625374 131625541 -24004579 - MIR SINE MIR -86 176 5 3 1589 207 330 74 11 chr4 131626148 131626243 -24003877 - L2a LINE L2 -5 3421 3321 3 1589 230 343 40 82 chr4 131626952 131627174 -24002946 + MIR SINE MIR 45 264 -4 3 1589 206 255 39 0 chr4 131627872 131627923 -24002197 - MIR3 SINE MIR -47 161 109 3 1589 289 258 42 31 chr4 131628158 131628254 -24001866 + MIRb SINE MIR 31 127 -141 3 1589 212 270 95 63 chr4 131628501 131628596 -24001524 - MIR3 SINE MIR -26 182 85 3 1589 291 54 0 0 chr4 131628667 131628704 -24001416 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1589 223 290 72 37 chr4 131629473 131629589 -24000531 - MIR SINE MIR -142 126 1 3 1589 621 105 0 0 chr4 131629815 131629910 -24000210 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 3 1589 180 0 0 0 chr4 131631129 131631149 -23998971 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 3 1589 219 288 66 40 chr4 131631596 131631672 -23998448 + MIR SINE MIR 63 140 -68 3 1589 198 306 71 36 chr4 131631921 131632033 -23998087 - L3 LINE CR1 -135 4354 4239 3 1589 181 304 18 18 chr4 131632129 131632186 -23997934 - MIR SINE MIR -61 147 91 3 1589 248 277 124 38 chr4 131633710 131633750 -23996370 + PB1D9 SINE Alu 6 119 -1 3 1589 262 292 0 0 chr4 131633750 131633815 -23996305 + ID_B1 SINE B4 157 221 -3 3 1589 706 89 18 0 chr4 131633842 131633954 -23996166 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 1589 501 216 103 8 chr4 131634112 131634229 -23995891 + RSINE1 SINE B4 3 130 -35 3 1589 236 330 5 126 chr4 131634245 131634265 -23995855 - YREP_Mm Unknown Unknown -1486 326 268 3 1589 611 290 0 28 chr4 131634265 131634407 -23995713 + ID_B1 SINE B4 80 217 -7 3 1589 236 330 5 126 chr4 131634407 131634443 -23995677 - YREP_Mm Unknown Unknown -1486 267 153 3 1589 318 331 83 0 chr4 131634820 131634941 -23995179 - L2c LINE L2 -233 3154 3024 3 1589 701 181 15 29 chr4 131636121 131636258 -23993862 + B1F2 SINE Alu 14 148 -1 3 1589 371 273 22 22 chr4 131636275 131636365 -23993755 + B1F SINE Alu 1 90 -59 3 1589 225 0 0 0 chr4 131636453 131636478 -23993642 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1589 336 235 88 0 chr4 131636478 131636546 -23993574 + PB1D10 SINE Alu 34 107 -10 3 1589 785 204 121 21 chr4 131636636 131636826 -23993294 + B3 SINE B2 2 210 -6 3 1589 949 152 116 0 chr4 131637007 131637171 -23992949 + B2_Mm1t SINE B2 2 184 -9 3 1589 25 31 0 0 chr4 131637203 131637235 -23992885 + AT_rich Low_complexity Low_complexity 1 32 0 3 1589 468 131 0 0 chr4 131637274 131637350 -23992770 - B3 SINE B2 -109 89 14 3 1589 531 45 0 0 chr4 131637362 131637428 -23992692 + (CTG)n Simple_repeat Simple_repeat 2 67 0 3 1589 858 170 0 7 chr4 131637429 131637565 -23992555 - B1_Mus1 SINE Alu -11 137 3 3 1589 464 266 67 37 chr4 131637568 131637732 -23992388 + B4 SINE B4 55 223 -69 3 1589 209 42 41 41 chr4 131637732 131637781 -23992339 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 3 1589 363 308 143 23 chr4 131637791 131637924 -23992196 + RSINE1 SINE B4 2 150 -15 3 1589 250 347 83 0 chr4 131637956 131638028 -23992092 + B4 SINE B4 215 292 0 3 1589 281 237 72 0 chr4 131637997 131638072 -23992048 - B3A SINE B2 -44 172 91 3 1589 994 129 33 66 chr4 131638091 131638213 -23991907 + B2_Mm2 SINE B2 2 119 -76 3 1589 2676 60 60 3 chr4 131638213 131638566 -23991554 - L1Md_F2 LINE L1 -1 6581 6209 3 1589 994 129 33 66 chr4 131638566 131638625 -23991495 + B2_Mm2 SINE B2 120 177 -18 3 1589 22 0 0 0 chr4 131638630 131638652 -23991468 + AT_rich Low_complexity Low_complexity 1 22 0 3 1589 5509 117 135 89 chr4 131638906 131639833 -23990287 + RMER12 LTR ERVK 2 890 -432 3 1589 381 43 0 0 chr4 131639833 131639880 -23990240 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1589 306 0 0 0 chr4 131639880 131639913 -23990207 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1589 5509 117 135 89 chr4 131639913 131640155 -23989965 + RMER12 LTR ERVK 891 1225 -97 3 1589 201 292 0 15 chr4 131640427 131640493 -23989627 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1589 268 297 30 81 chr4 131640521 131640620 -23989500 + PB1D7 SINE Alu 50 143 -6 3 1589 253 298 174 8 chr4 131640647 131640779 -23989341 + YREP_Mm Unknown Unknown 154 307 -1505 3 1589 401 244 161 25 chr4 131640663 131640781 -23989339 - ID_B1 SINE B4 0 224 91 3 1589 328 269 114 53 chr4 131640679 131640793 -23989327 - B1F2 SINE Alu -28 121 1 3 1589 680 214 0 0 chr4 131640846 131640958 -23989162 - RSINE1 SINE B4 -31 134 23 3 1589 848 98 98 0 chr4 131641009 131641141 -23988979 - B1_Mus1 SINE Alu 0 148 4 3 1589 638 240 110 7 chr4 131641383 131641538 -23988582 + B3 SINE B2 2 172 -44 3 1589 753 116 108 8 chr4 131641557 131641687 -23988433 + B1_Mur4 SINE Alu 8 150 0 3 1589 1288 108 17 0 chr4 131641735 131641911 -23988209 - B2_Mm2 SINE B2 -15 180 2 3 1589 21 0 0 0 chr4 131641911 131641932 -23988188 + AT_rich Low_complexity Low_complexity 1 21 0 3 1589 872 232 11 26 chr4 131642029 131642219 -23987901 + RLTR1D LTR ERV1 60 246 -359 3 1589 1805 193 46 60 chr4 131642219 131642632 -23987488 + RLTR1D LTR ERV1 183 589 -16 3 1589 221 241 0 17 chr4 131643156 131643215 -23986905 + MIR SINE MIR 79 136 -126 3 1589 922 269 5 14 chr4 131643231 131643450 -23986670 + ID_B1 SINE B4 1 217 -7 3 1589 604 198 37 107 chr4 131643457 131643672 -23986448 + Lx4B LINE L1 6843 7042 -16 3 1589 180 0 0 0 chr4 131643672 131643692 -23986428 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 3 1589 871 240 43 12 chr4 131643751 131643958 -23986162 + B3 SINE B2 1 195 0 3 1589 25 0 0 0 chr4 131643994 131644019 -23986101 + AT_rich Low_complexity Low_complexity 1 25 0 3 1589 471 250 54 0 chr4 131644096 131644208 -23985912 + ID_B1 SINE B4 103 220 -4 3 1589 786 147 18 6 chr4 131644601 131644772 -23985348 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 3 1589 435 19 0 0 chr4 131645252 131645304 -23984816 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1589 1153 29 43 0 chr4 131645305 131645444 -23984676 - B1_Mus1 SINE Alu -2 146 2 3 1589 208 312 12 0 chr4 131645712 131645761 -23984359 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1589 1117 188 5 47 chr4 131645761 131645973 -23984147 - B3 SINE B2 -10 206 4 3 1589 208 312 12 0 chr4 131645973 131646003 -23984117 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1589 432 0 0 0 chr4 131646003 131646051 -23984069 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1589 854 179 0 29 chr4 131646052 131646190 -23983930 - B1_Mur1 SINE Alu -13 136 3 3 1589 1074 211 10 0 chr4 131646251 131646455 -23983665 - B3 SINE B2 -6 210 5 3 1589 183 80 0 0 chr4 131646472 131646497 -23983623 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1589 423 294 59 0 chr4 131646510 131646612 -23983508 - RSINE1 SINE B4 -20 145 38 4 1589 522 0 0 0 chr4 131646633 131646691 -23983429 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1589 347 261 138 21 chr4 131646691 131646785 -23983335 - PB1D10 SINE Alu -11 106 2 4 1589 414 0 0 0 chr4 131646871 131646917 -23983203 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1589 378 0 0 0 chr4 131646917 131646958 -23983162 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1589 745 98 0 0 chr4 131646964 131647066 -23983054 - B1_Mur4 SINE Alu -6 144 43 4 1589 360 161 0 0 chr4 131647066 131647122 -23982998 + (TCTCTG)n Simple_repeat Simple_repeat 1 56 0 4 1589 333 328 0 0 chr4 131647104 131647232 -23982888 + (CCCCAG)n Simple_repeat Simple_repeat 1 128 0 4 1589 270 75 0 48 chr4 131647232 131647274 -23982846 - PB1D9 SINE Alu -61 59 20 4 1589 1093 23 0 15 chr4 131647641 131647774 -23982346 - B1_Mm SINE Alu 0 147 17 4 1589 6065 91 48 5 chr4 131647872 131648966 -23981154 - L1VL4 LINE L1 -2404 1155 9 4 1589 1087 189 19 13 chr4 131649573 131649784 -23980336 + B3 SINE B2 3 191 -25 4 1589 1084 92 14 160 chr4 131650252 131650317 -23979803 + B2_Mm2 SINE B2 8 52 -143 4 1589 1183 75 7 0 chr4 131650317 131650463 -23979657 - B1_Mm SINE Alu 0 147 1 4 1589 1084 92 14 160 chr4 131650463 131650616 -23979504 + B2_Mm2 SINE B2 53 194 -1 4 1589 411 107 176 12 chr4 131650754 131650839 -23979281 - B2_Mm2 SINE B2 -1 194 96 4 1589 274 286 99 16 chr4 131651222 131651343 -23978777 + RLTR4_MM-int LTR ERV1 1035 1165 -4152 4 1589 289 131 5 99 chr4 131651357 131651437 -23978683 - ORR1B2 LTR MaLR 0 378 306 4 1589 229 300 78 81 chr4 131651587 131651664 -23978456 + RMER17C LTR ERVK 22 97 -313 4 1589 459 0 0 0 chr4 131651664 131651715 -23978405 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1589 229 300 78 81 chr4 131651715 131651920 -23978200 + RMER17C LTR ERVK 98 303 -107 4 1589 1709 127 171 10 chr4 131651961 131652271 -23977849 - ORR1B1 LTR MaLR -34 360 1 4 1589 4740 183 13 55 chr4 131653371 131654309 -23975811 + RMER13B LTR ERVK 1 898 -10 4 1589 343 369 52 36 chr4 131654336 131654804 -23975316 + RLTR4_MM-int LTR ERV1 2989 3424 -4177 4 1589 1353 69 69 0 chr4 131654836 131655010 -23975110 + B2_Mm2 SINE B2 1 186 -9 4 1589 455 331 67 70 chr4 131655039 131655897 -23974223 + RLTR4_MM-int LTR ERV1 4111 4395 -3206 4 1589 711 304 67 31 chr4 131656193 131656597 -23973523 + RLTR4_MM-int LTR ERV1 4727 5192 -2409 4 1589 335 149 37 138 chr4 131656679 131656788 -23973332 + B2_Mm2 SINE B2 97 194 -1 4 1589 867 284 39 14 chr4 131657936 131658218 -23971902 + RLTR18-int LTR ERVK 4962 5250 -111 4 1589 279 54 0 0 chr4 131658235 131658272 -23971848 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1589 279 0 0 0 chr4 131658272 131658303 -23971817 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1589 616 104 20 40 chr4 131658303 131658403 -23971717 - B1_Mur4 SINE Alu -19 131 34 4 1589 261 224 0 126 chr4 131658332 131658419 -23971701 - RLTR25B LTR ERVK -529 499 424 4 1589 2046 52 0 4 chr4 131658887 131659138 -23970982 - L1_Mus2 LINE L1 -1 6565 6316 4 1589 1074 73 66 0 chr4 131659271 131659408 -23970712 + B1_Mus1 SINE Alu 2 147 -1 4 1589 252 130 0 0 chr4 131659409 131659455 -23970665 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1589 1452 190 163 15 chr4 131659979 131660015 -23970105 - MTD LTR MaLR -31 388 344 4 1589 911 112 6 18 chr4 131660015 131660179 -23969941 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 4 1589 1452 190 163 15 chr4 131660179 131660474 -23969646 - MTD LTR MaLR -76 343 9 4 1589 573 133 0 22 chr4 131660619 131660696 -23969424 + PB1D9 SINE Alu 31 107 -13 4 1589 339 25 0 0 chr4 131660696 131660736 -23969384 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1589 573 133 0 22 chr4 131660736 131660750 -23969370 + PB1D9 SINE Alu 108 120 0 4 1589 190 55 0 53 chr4 131660922 131660960 -23969160 + (CACCC)n Simple_repeat Simple_repeat 1 36 0 4 1589 374 209 33 0 chr4 131661508 131661599 -23968521 + PB1D10 SINE Alu 5 98 -19 4 1589 3287 24 53 0 chr4 131661652 131662028 -23968092 - MTA_Mm LTR MaLR 0 396 1 4 1589 300 154 0 0 chr4 131662112 131662164 -23967956 + T-rich Low_complexity Low_complexity 1 52 0 4 1589 1257 41 0 0 chr4 131662164 131662311 -23967809 - B1_Mm SINE Alu 0 147 1 4 1589 507 250 50 0 chr4 131662419 131662519 -23967601 - PB1D7 SINE Alu -15 105 1 4 1589 203 103 0 25 chr4 131662530 131662570 -23967550 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 4 1589 296 278 0 0 chr4 131662573 131662645 -23967475 - PB1D10 SINE Alu -7 110 39 4 1589 391 250 13 119 chr4 131663143 131663184 -23966936 - RMER30 DNA MER1_type -55 147 108 4 1589 1416 63 0 6 chr4 131663184 131663198 -23966922 - B2_Mm1t SINE B2 -19 174 161 4 1589 459 0 0 0 chr4 131663198 131663249 -23966871 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1589 1416 63 0 6 chr4 131663249 131663409 -23966711 - B2_Mm1t SINE B2 -33 160 1 4 1589 1043 108 14 0 chr4 131663415 131663554 -23966566 - B1_Mur4 SINE Alu -5 145 5 4 1589 391 250 13 119 chr4 131663554 131663664 -23966456 - RMER30 DNA MER1_type -95 107 6 4 1589 716 182 0 24 chr4 131663901 131664025 -23966095 + ID_B1 SINE B4 88 208 -16 4 1589 611 248 76 0 chr4 131664032 131664177 -23965943 - B3A SINE B2 -42 156 1 4 1589 236 359 67 17 chr4 131664636 131664755 -23965365 - MIR3 SINE MIR -39 169 45 4 1589 217 350 0 0 chr4 131664849 131664946 -23965174 + L2 LINE L2 2072 2168 -1251 4 1589 359 261 147 9 chr4 131665094 131665210 -23964910 - MIRb SINE MIR -27 241 110 4 1589 280 220 53 51 chr4 131665625 131665713 -23964407 + MIRc SINE MIR 60 157 -111 4 1589 924 172 21 0 chr4 131665713 131665858 -23964262 + B1_Mur3 SINE Alu 1 148 -1 4 1589 203 136 0 43 chr4 131665867 131665913 -23964207 + (CATA)n Simple_repeat Simple_repeat 2 45 0 4 1589 371 216 10 102 chr4 131665931 131666029 -23964091 + MT2B LTR ERVL 167 255 -346 4 1589 750 182 24 0 chr4 131665942 131666068 -23964052 + B1_Mur1 SINE Alu 13 141 -8 4 1589 630 85 19 19 chr4 131666068 131666176 -23963944 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 4 1589 414 346 0 16 chr4 131666670 131666799 -23963321 + RSINE1 SINE B4 16 142 -23 4 1589 685 99 225 0 chr4 131668087 131668198 -23961922 - B1_Mur2 SINE Alu -5 144 9 4 1589 860 230 94 5 chr4 131668211 131668239 -23961881 - B3 SINE B2 -6 210 183 4 1589 222 37 0 0 chr4 131668239 131668266 -23961854 + (TATG)n Simple_repeat Simple_repeat 4 30 0 4 1589 860 230 94 5 chr4 131668266 131668429 -23961691 - B3 SINE B2 -34 182 3 4 1589 272 148 167 0 chr4 131668667 131668721 -23961399 - ID4_ SINE ID -19 64 2 4 1589 328 204 209 19 chr4 131668729 131668834 -23961286 - PB1 SINE Alu -2 125 1 4 1589 652 217 46 8 chr4 131670374 131670504 -23959616 + ID_B1 SINE B4 53 187 -37 4 1589 875 114 11 28 chr4 131670504 131670684 -23959436 + GA-rich Low_complexity Low_complexity 2 178 0 4 1589 416 82 27 0 chr4 131670826 131670899 -23959221 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 4 1589 552 252 61 8 chr4 131670900 131671032 -23959088 - RSINE1 SINE B4 -24 141 3 4 1589 310 272 11 80 chr4 131671209 131671222 -23958898 + MT2B LTR ERVL 154 160 -441 4 1589 414 322 0 17 chr4 131671222 131671339 -23958781 + PB1D10 SINE Alu 3 117 0 4 1589 294 343 10 19 chr4 131671926 131672030 -23958090 - PB1D10 SINE Alu 0 117 15 4 1589 235 188 155 28 chr4 131672247 131672318 -23957802 + MLT1J2 LTR MaLR 367 446 -2 4 1589 552 278 152 0 chr4 131672421 131672612 -23957508 - ID_B1 SINE B4 0 224 5 4 1589 331 91 0 0 chr4 131672612 131672658 -23957462 - B3A SINE B2 -169 47 1 4 1589 228 329 49 0 chr4 131673472 131673554 -23956566 + B4A SINE B4 82 167 -125 4 1589 557 217 28 0 chr4 131673483 131673589 -23956531 + PB1D10 SINE Alu 9 117 0 4 1589 434 204 204 0 chr4 131673683 131673791 -23956329 + B1F2 SINE Alu 20 149 0 4 1589 226 146 24 0 chr4 131673897 131673938 -23956182 - RSINE1 SINE B4 -39 126 85 4 1589 514 97 4 56 chr4 131674470 131674568 -23955552 + B1_Mur4 SINE Alu 28 149 -1 4 1589 189 0 0 0 chr4 131674577 131674598 -23955522 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 1589 672 228 262 6 chr4 131674623 131674795 -23955325 + B3 SINE B2 1 216 0 4 1589 408 296 0 0 chr4 131674985 131675073 -23955047 + PB1D10 SINE Alu 30 117 0 4 1589 705 211 27 34 chr4 131675147 131675294 -23954826 - B1_Mm SINE Alu -1 146 1 4 1589 777 164 0 0 chr4 131675378 131675518 -23954602 + GA-rich Low_complexity Low_complexity 2 141 0 4 1589 224 319 14 14 chr4 131676041 131676114 -23954006 + L2b LINE L2 2986 3058 -317 4 1589 2030 186 13 24 chr4 131676410 131676790 -23953330 - Lx5 LINE L1 0 7050 6675 4 1589 457 252 28 0 chr4 131676796 131676903 -23953217 - ID_B1 SINE B4 -28 196 87 4 1589 625 271 29 0 chr4 131677323 131677463 -23952657 + ID_B1 SINE B4 79 222 -2 4 1589 1012 106 50 0 chr4 131677482 131677623 -23952497 - B1_Mus1 SINE Alu 0 148 1 4 1589 436 248 138 8 chr4 131677720 131677850 -23952270 + B3A SINE B2 52 198 0 4 1589 757 85 28 0 chr4 131678777 131678883 -23951237 - PB1D9 SINE Alu -1 119 11 4 1589 439 219 163 28 chr4 131678778 131678919 -23951201 - B4 SINE B4 -69 223 64 4 1589 363 218 43 172 chr4 131678784 131678921 -23951199 - MT2B2 LTR ERVL -326 258 145 4 1589 615 254 7 15 chr4 131678921 131679057 -23951063 + B1_Mur1 SINE Alu 3 137 -12 4 1589 510 31 0 0 chr4 131679057 131679121 -23950999 + (CATA)n Simple_repeat Simple_repeat 3 66 0 4 1589 363 218 43 172 chr4 131679121 131679215 -23950905 - MT2B2 LTR ERVL -440 144 57 4 1589 583 215 19 0 chr4 131679216 131679323 -23950797 + PB1D7 SINE Alu 3 111 -9 4 1589 318 252 95 24 chr4 131679743 131679869 -23950251 - MIR SINE MIR -4 258 124 4 1589 202 363 85 53 chr4 131679930 131680119 -23950001 + L2b LINE L2 3181 3375 0 4 1589 266 203 6 72 chr4 131680932 131681037 -23949083 - MER58C DNA MER1_type -7 208 115 4 1589 598 192 8 24 chr4 131681023 131681146 -23948974 - B3 SINE B2 0 216 96 4 1589 527 125 0 0 chr4 131681173 131681245 -23948875 + tRNA-Glu-GAG_ tRNA tRNA 1 72 -3 4 1589 416 98 16 0 chr4 131681288 131681349 -23948771 + B3 SINE B2 1 62 -154 5 1589 1160 74 12 0 chr4 131681349 131681512 -23948608 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 5 1589 903 98 125 7 chr4 131681512 131681656 -23948464 - B2_Mm1t SINE B2 -13 180 20 5 1589 268 287 36 106 chr4 131681676 131681714 -23948406 + MT2B2 LTR ERVL 129 197 -404 5 1589 410 240 37 28 chr4 131681714 131681821 -23948299 + PB1D10 SINE Alu 3 110 -7 5 1589 268 287 36 106 chr4 131681821 131681883 -23948237 + MT2B2 LTR ERVL 198 314 -287 5 1589 295 271 0 0 chr4 131681858 131681917 -23948203 + B1F2 SINE Alu 1 59 -90 5 1589 280 299 55 159 chr4 131681917 131682013 -23948107 + ID_B1 SINE B4 83 218 -6 5 1589 300 27 0 0 chr4 131682015 131682052 -23948068 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 5 1589 193 338 0 40 chr4 131683047 131683121 -23946999 - MIRm SINE MIR -91 185 115 5 1589 873 88 0 0 chr4 131683916 131684029 -23946091 - B1_Mus1 SINE Alu -2 146 34 5 1589 349 263 31 10 chr4 131684023 131684119 -23946001 - RSINE1 SINE B4 -67 98 1 5 1589 1175 42 0 7 chr4 131684296 131684439 -23945681 - B1_Mus1 SINE Alu -5 143 2 5 1589 192 111 0 0 chr4 131684494 131684530 -23945590 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1589 841 116 85 0 chr4 131684725 131684854 -23945266 - B1_Mus1 SINE Alu -6 142 3 5 1589 240 236 67 39 chr4 131684926 131685033 -23945087 - MIRc SINE MIR -111 157 47 5 1589 234 299 42 112 chr4 131685014 131685157 -23944963 - MIR3 SINE MIR -33 175 43 5 1589 759 212 184 27 chr4 131685593 131685816 -23944304 + B4 SINE B4 1 258 -34 5 1589 1011 154 0 0 chr4 131685824 131686105 -23944015 + (TG)n Simple_repeat Simple_repeat 1 281 0 5 1589 719 271 48 65 chr4 131686876 131687105 -23943015 - B4A SINE B4 0 292 68 5 1589 845 71 159 0 chr4 131687251 131687377 -23942743 + B1_Mm SINE Alu 1 146 -1 5 1589 495 194 14 0 chr4 131687399 131687497 -23942623 + B1_Mur2 SINE Alu 43 149 0 5 1589 496 261 53 80 chr4 131688562 131688712 -23941408 + RSINE1 SINE B4 3 148 -17 5 1589 1078 101 0 7 chr4 131689052 131689202 -23940918 + B1_Mur4 SINE Alu 2 150 0 5 1589 414 294 62 14 chr4 131689859 131690004 -23940116 - ID_B1 SINE B4 -70 154 3 5 1589 213 288 26 40 chr4 131690011 131690087 -23940033 + L2a LINE L2 3243 3333 -93 5 1589 1004 192 44 25 chr4 131690547 131690563 -23939557 - B3 SINE B2 0 216 203 5 1589 693 161 93 0 chr4 131690563 131690681 -23939439 - B1_Mur4 SINE Alu -19 131 3 5 1589 1004 192 44 25 chr4 131690681 131690867 -23939253 - B3 SINE B2 -14 202 11 5 1589 1272 150 108 261 chr4 131690930 131691257 -23938863 - RLTR11A2 LTR ERVK 0 527 296 5 1589 1035 109 65 24 chr4 131691257 131691426 -23938694 - B2_Mm1t SINE B2 -14 179 4 5 1589 1272 150 108 261 chr4 131691426 131691583 -23938537 - RLTR11A2 LTR ERVK -232 295 162 5 1589 1153 68 0 20 chr4 131691583 131691734 -23938386 - B1_Mus1 SINE Alu 0 148 1 5 1589 1272 150 108 261 chr4 131691734 131691870 -23938250 - RLTR11A2 LTR ERVK -366 161 1 5 1589 844 259 14 19 chr4 131691919 131692128 -23937992 - B3 SINE B2 -8 208 1 5 1589 21 0 0 0 chr4 131692144 131692165 -23937955 + AT_rich Low_complexity Low_complexity 1 21 0 5 1589 560 191 0 36 chr4 131692237 131692367 -23937753 - PB1D9 SINE Alu -16 134 18 5 1589 265 200 89 107 chr4 131692285 131692397 -23937723 - RLTR25B LTR ERVK -532 496 387 5 1589 1163 191 29 5 chr4 131692412 131692622 -23937498 + B3 SINE B2 1 215 -1 5 1589 407 318 56 43 chr4 131692625 131692786 -23937334 - B3 SINE B2 -14 202 40 5 1589 1056 95 28 45 chr4 131692801 131692978 -23937142 - B2_Mm2 SINE B2 -20 175 2 5 1589 247 386 35 24 chr4 131693533 131693703 -23936417 - L3 LINE CR1 -26 4463 4292 5 1589 933 152 0 0 chr4 131693762 131693900 -23936220 + B1_Mus2 SINE Alu 1 138 -9 5 1589 909 241 20 5 chr4 131693946 131694150 -23935970 + B3 SINE B2 5 211 -5 5 1589 1102 74 0 0 chr4 131694207 131694342 -23935778 + B1_Mus1 SINE Alu 2 136 -12 5 1589 189 0 0 0 chr4 131694342 131694363 -23935757 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1589 1025 241 0 24 chr4 131694363 131694571 -23935549 + B3 SINE B2 13 215 -1 5 1589 879 212 80 10 chr4 131694674 131694874 -23935246 - B3 SINE B2 0 216 3 5 1589 316 236 17 94 chr4 131694874 131694991 -23935129 + RLTR25B LTR ERVK 414 521 -507 5 1589 819 48 10 0 chr4 131694909 131695012 -23935108 + B1_Mm SINE Alu 44 147 0 5 1589 331 121 24 0 chr4 131695015 131695029 -23935091 + (CAAAA)n Simple_repeat Simple_repeat 2 15 0 5 1589 1655 21 0 21 chr4 131695029 131695223 -23934897 + B2_Mm1a SINE B2 2 191 -2 5 1589 331 121 24 0 chr4 131695223 131695291 -23934829 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 5 1589 351 0 0 0 chr4 131695497 131695536 -23934584 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1589 263 271 70 40 chr4 131695857 131695957 -23934163 - MIR SINE MIR -79 183 81 5 1589 1114 66 0 7 chr4 131695969 131696107 -23934013 + B1_Mm SINE Alu 1 137 -10 5 1589 740 91 9 0 chr4 131696107 131696217 -23933903 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 5 1589 534 298 14 21 chr4 131696455 131696599 -23933521 + ID_B1 SINE B4 79 221 -3 5 1589 459 193 92 61 chr4 131697850 131697977 -23932143 + B1_Mur2 SINE Alu 2 119 -1 5 1589 260 263 125 49 chr4 131697977 131697994 -23932126 + B4 SINE B4 87 241 -51 5 1589 1028 85 0 23 chr4 131698308 131698441 -23931679 - B1_Mur4 SINE Alu -19 131 2 5 1589 299 334 30 18 chr4 131698454 131698600 -23931520 - MIRb SINE MIR -117 159 16 5 1589 712 226 33 89 chr4 131698984 131699198 -23930922 - ID_B1 SINE B4 -22 202 1 5 1589 605 80 11 0 chr4 131699216 131699304 -23930816 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1589 315 0 0 0 chr4 131699892 131699927 -23930193 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1589 396 305 47 43 chr4 131700647 131700832 -23929288 + MIRc SINE MIR 34 218 -50 5 1589 369 0 0 0 chr4 131700836 131700877 -23929243 + (CCA)n Simple_repeat Simple_repeat 2 42 0 5 1589 215 374 32 47 chr4 131701440 131701586 -23928534 - L2b LINE L2 -225 3162 3018 5 1589 1294 172 206 38 chr4 131701668 131701718 -23928402 + MTD LTR MaLR 46 87 -332 5 1589 1667 37 0 0 chr4 131701718 131701908 -23928212 + B2_Mm1a SINE B2 1 190 -3 5 1589 1294 172 206 38 chr4 131701908 131702177 -23927943 + MTD LTR MaLR 88 419 0 5 1589 1029 190 58 29 chr4 131702190 131702396 -23927724 + B3 SINE B2 2 213 -3 5 1589 859 184 0 0 chr4 131702404 131702540 -23927580 + B1_Mur1 SINE Alu 1 136 -13 5 1589 495 0 0 0 chr4 131702541 131702596 -23927524 + (TAA)n Simple_repeat Simple_repeat 3 57 0 5 1589 342 286 211 29 chr4 131702797 131703006 -23927114 - RMER15 LTR ERVL -54 521 275 5 1589 1564 57 5 5 chr4 131703165 131703360 -23926760 - B2_Mm2 SINE B2 0 195 1 5 1589 482 283 70 28 chr4 131703367 131703509 -23926611 - B1F2 SINE Alu -1 148 1 5 1589 1768 158 22 42 chr4 131703548 131703703 -23926417 + ORR1C1 LTR MaLR 1 157 -221 5 1589 1358 79 11 6 chr4 131703703 131703882 -23926238 + B2_Mm2 SINE B2 1 180 -15 5 1589 867 125 0 0 chr4 131703882 131704018 -23926102 + (GAA)n Simple_repeat Simple_repeat 2 137 0 5 1589 1768 158 22 42 chr4 131704018 131704172 -23925948 + ORR1C1 LTR MaLR 158 304 -74 5 1589 221 214 209 23 chr4 131704172 131704258 -23925862 - MIRb SINE MIR -42 226 125 5 1589 702 244 32 13 chr4 131705127 131705281 -23924839 + B3A SINE B2 3 159 -39 5 1589 288 0 0 0 chr4 131705311 131705343 -23924777 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1589 248 227 200 22 chr4 131705683 131705773 -23924347 - MIRb SINE MIR -38 230 125 5 1589 1445 78 16 0 chr4 131705803 131705995 -23924125 - B2_Mm2 SINE B2 0 195 1 5 1589 982 57 0 0 chr4 131706045 131706167 -23923953 + B1_Mus2 SINE Alu 3 124 -23 5 1589 282 56 0 0 chr4 131706236 131706272 -23923848 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1589 1075 287 57 70 chr4 131706309 131706766 -23923354 - MT2A LTR ERVL -64 469 19 5 1589 362 21 0 21 chr4 131706837 131706885 -23923235 + (TCC)n Simple_repeat Simple_repeat 2 48 0 5 1589 609 140 9 70 chr4 131706902 131707017 -23923103 - B1_Mur3 SINE Alu 0 149 42 5 1589 224 0 0 157 chr4 131707020 131707128 -23922992 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 5 1589 496 281 58 0 chr4 131707219 131707340 -23922780 - B1F SINE Alu -21 128 1 5 1589 522 251 98 131 chr4 131707549 131707966 -23922154 + RMER2 LTR ERV1 5 544 -23 5 1589 252 0 0 0 chr4 131708161 131708189 -23921931 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 5 1589 485 204 28 9 chr4 131708190 131708299 -23921821 - B1_Mur3 SINE Alu -7 142 32 5 1589 1867 251 85 30 chr4 131708299 131708892 -23921228 + RMER12 LTR ERVK 1 572 -1276 5 1589 3068 189 176 68 chr4 131708892 131709705 -23920415 + RMER13B LTR ERVK 1 901 -7 5 1589 420 290 17 124 chr4 131709709 131710008 -23920112 + RMER12 LTR ERVK 537 803 -1045 5 1589 1118 201 94 118 chr4 131710025 131710398 -23919722 + RMER12 LTR ERVK 959 1322 0 5 1589 236 125 48 48 chr4 131710398 131710433 -23919687 - B1_Mus1 SINE Alu -112 36 2 5 1589 212 328 90 0 chr4 131710670 131710737 -23919383 + ID4_ SINE ID 2 74 -9 5 1589 564 15 0 0 chr4 131710740 131710805 -23919315 + (GGA)n Simple_repeat Simple_repeat 3 67 0 5 1589 405 269 27 27 chr4 131711042 131711153 -23918967 - PB1D10 SINE Alu -1 116 6 5 1589 212 296 101 9 chr4 131711545 131711654 -23918466 - MIRc SINE MIR -3 265 147 5 1589 1242 34 0 20 chr4 131711868 131712017 -23918103 + B1_Mus2 SINE Alu 2 147 0 5 1589 526 153 277 9 chr4 131712027 131712139 -23917981 + B1_Mus1 SINE Alu 2 143 -5 5 1589 1255 149 50 5 chr4 131712176 131712378 -23917742 - B3 SINE B2 -5 211 1 6 1589 511 289 53 82 chr4 131712465 131712635 -23917485 - RSINE1 SINE B4 0 165 1 6 1589 885 228 161 4 chr4 131712809 131713082 -23917038 - RMER15 LTR ERVL -3 572 257 6 1589 250 148 88 53 chr4 131713160 131713217 -23916903 - RSINE1 SINE B4 -88 77 19 6 1589 2732 126 66 14 chr4 131713585 131714068 -23916052 - RLTR11A2 LTR ERVK -14 513 6 6 1589 1170 88 0 0 chr4 131714070 131714217 -23915903 + B1_Mus2 SINE Alu 1 147 0 6 1589 3986 161 120 64 chr4 131714691 131715540 -23914580 + RMER19B LTR ERVK 6 902 0 6 1589 2127 179 128 17 chr4 131715540 131716070 -23914050 + MurERV4_19-int LTR ERVK 1 589 -5191 6 1589 16180 112 39 72 chr4 131716080 131716372 -23913748 + MurERV4_19-int LTR ERVK 2752 3030 -2750 6 1589 1049 101 0 7 chr4 131716372 131716512 -23913608 + B1_Mus2 SINE Alu 1 139 -8 6 1589 257 0 30 0 chr4 131716512 131716545 -23913575 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1589 16180 112 39 72 chr4 131716545 131716683 -23913437 + MurERV4_19-int LTR ERVK 3031 3165 -2615 6 1589 531 31 0 0 chr4 131716683 131716748 -23913372 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 6 1589 16180 112 39 72 chr4 131716748 131716805 -23913315 + MurERV4_19-int LTR ERVK 3166 3235 -2545 6 1589 1307 27 0 0 chr4 131716805 131716952 -23913168 + B1_Mus2 SINE Alu 1 147 0 6 1589 16180 112 39 72 chr4 131716952 131717388 -23912732 + MurERV4_19-int LTR ERVK 3236 3618 -2162 6 1589 1453 50 0 11 chr4 131717388 131717569 -23912551 + B2_Mm2 SINE B2 1 179 -16 6 1589 16180 112 39 72 chr4 131717569 131717798 -23912322 + MurERV4_19-int LTR ERVK 3619 3830 -1950 6 1589 1503 48 26 5 chr4 131717798 131717987 -23912133 + B2_Mm2 SINE B2 1 193 -2 6 1589 16180 112 39 72 chr4 131717987 131719302 -23910818 + MurERV4_19-int LTR ERVK 3831 5130 -650 6 1589 1686 26 5 0 chr4 131719302 131719494 -23910626 - B2_Mm1t SINE B2 0 193 1 6 1589 16180 112 39 72 chr4 131719494 131719738 -23910382 + MurERV4_19-int LTR ERVK 5131 5319 -461 6 1589 1444 70 37 0 chr4 131719738 131719925 -23910195 + B2_Mm2 SINE B2 1 194 -1 6 1589 16180 112 39 72 chr4 131719925 131720267 -23909853 + MurERV4_19-int LTR ERVK 5320 5701 -79 6 1589 1176 62 0 33 chr4 131720267 131720418 -23909702 - B1_Mus2 SINE Alu -1 146 1 6 1589 16180 112 39 72 chr4 131720418 131720480 -23909640 + MurERV4_19-int LTR ERVK 5702 5763 -17 6 1589 1116 108 13 0 chr4 131720511 131720669 -23909451 + B2_Mm1a SINE B2 1 160 -33 6 1589 261 83 0 0 chr4 131720669 131720705 -23909415 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 6 1589 2103 157 79 13 chr4 131720713 131721093 -23909027 - RLTR17 LTR ERVK -16 676 272 6 1589 432 0 0 0 chr4 131721382 131721430 -23908690 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1589 339 25 0 0 chr4 131723186 131723226 -23906894 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1589 562 209 193 7 chr4 131723226 131723366 -23906754 - B3 SINE B2 -50 166 1 6 1589 228 280 0 0 chr4 131723587 131723637 -23906483 + polypyrimidine Low_complexity Low_complexity 2 51 0 6 1589 804 169 59 0 chr4 131723637 131723773 -23906347 - B1_Mur4 SINE Alu -6 144 1 6 1589 2550 62 0 6 chr4 131723804 131724127 -23905993 + L1Md_F2 LINE L1 6262 6582 0 6 1589 844 231 52 5 chr4 131724198 131724411 -23905709 + ID_B1 SINE B4 2 224 0 6 1589 562 278 0 80 chr4 131724578 131724641 -23905479 - RSINE1 SINE B4 -1 164 111 6 1589 2535 150 294 24 chr4 131724641 131725220 -23904900 + RMER19A LTR ERVK 1 735 -2 6 1589 562 278 0 80 chr4 131725220 131725332 -23904788 - RSINE1 SINE B4 -55 110 3 6 1589 270 286 0 0 chr4 131725651 131725721 -23904399 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1589 440 263 57 57 chr4 131725724 131725928 -23904192 - B3A SINE B2 -15 201 4 6 1589 417 39 0 0 chr4 131725980 131726031 -23904089 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1589 719 250 117 0 chr4 131726031 131726219 -23903901 - ID_B1 SINE B4 -10 214 5 6 1589 1147 102 68 0 chr4 131726220 131726397 -23903723 - B2_Mm1t SINE B2 -3 190 2 6 1589 180 0 0 0 chr4 131726722 131726742 -23903378 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1590 258 81 0 0 chr4 131727507 131727544 -23902576 + (TCC)n Simple_repeat Simple_repeat 3 39 0 6 1590 375 145 0 0 chr4 131727558 131727627 -23902493 + (T)n Simple_repeat Simple_repeat 1 69 0 6 1590 1240 41 7 0 chr4 131727630 131727776 -23902344 - B1_Mm SINE Alu 0 147 1 6 1590 473 139 254 25 chr4 131727777 131727895 -23902225 - B1_Mur3 SINE Alu 0 149 5 6 1590 186 43 0 0 chr4 131727896 131727919 -23902201 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1590 25 0 0 0 chr4 131727932 131727957 -23902163 + AT_rich Low_complexity Low_complexity 1 25 0 6 1590 713 205 77 18 chr4 131727957 131728126 -23901994 - B3 SINE B2 -27 189 11 6 1590 339 96 0 0 chr4 131728722 131728774 -23901346 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1590 250 154 87 0 chr4 131728894 131728961 -23901159 - MLT1A1 LTR MaLR -290 75 4 6 1590 195 129 0 0 chr4 131729482 131729513 -23900607 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 6 1590 335 89 0 18 chr4 131729725 131729782 -23900338 + (TATG)n Simple_repeat Simple_repeat 1 56 0 6 1590 984 142 0 0 chr4 131729783 131729931 -23900189 - B3 SINE B2 -45 171 24 6 1590 479 221 87 0 chr4 131730341 131730468 -23899652 + B1F1 SINE Alu 12 149 0 6 1590 805 133 59 0 chr4 131730542 131730677 -23899443 + B1_Mus1 SINE Alu 6 148 0 6 1590 941 159 206 0 chr4 131730743 131730913 -23899207 + B3 SINE B2 1 205 -11 6 1590 253 202 0 45 chr4 131731084 131731172 -23898948 + (CATA)n Simple_repeat Simple_repeat 2 85 0 6 1590 547 51 25 0 chr4 131731227 131731306 -23898814 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 6 1590 1050 38 0 0 chr4 131731515 131731646 -23898474 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 6 1590 457 204 65 108 chr4 131731651 131731819 -23898301 + B3 SINE B2 35 210 -6 6 1590 717 223 20 0 chr4 131731929 131732114 -23898006 + B3 SINE B2 3 195 -3 6 1590 892 134 15 0 chr4 131732117 131732251 -23897869 + B1_Mur3 SINE Alu 1 136 -13 6 1590 216 111 0 0 chr4 131732266 131732302 -23897818 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 1590 288 77 0 0 chr4 131732971 131733010 -23897110 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 6 1590 1134 68 0 40 chr4 131733010 131733162 -23896958 - B1_Mus1 SINE Alu 0 148 3 6 1590 225 0 0 0 chr4 131733194 131733219 -23896901 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1590 273 283 115 0 chr4 131733361 131733474 -23896646 - L1ME2z LINE L1 -403 6041 5916 6 1590 211 263 158 20 chr4 131733488 131733589 -23896531 + B1F1 SINE Alu 33 147 -2 6 1590 246 174 78 148 chr4 131733528 131733656 -23896464 + B4A SINE B4 165 283 -9 6 1590 1382 70 37 16 chr4 131733752 131733940 -23896180 + B2_Mm2 SINE B2 1 192 -3 6 1590 878 132 21 0 chr4 131734259 131734403 -23895717 + B1_Mus1 SINE Alu 1 147 -1 6 1590 291 114 0 0 chr4 131734759 131734803 -23895317 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1590 185 0 0 39 chr4 131734875 131734901 -23895219 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1590 480 263 60 81 chr4 131734927 131735076 -23895044 - RSINE1 SINE B4 -18 147 2 6 1590 538 311 112 6 chr4 131735076 131735250 -23894870 - B4A SINE B4 -65 227 35 6 1590 1513 136 87 13 chr4 131735253 131735552 -23894568 + ORR1B2 LTR MaLR 39 359 -8 6 1590 963 137 74 6 chr4 131735622 131735798 -23894322 - MTC LTR MaLR -226 195 8 6 1590 823 113 75 0 chr4 131735966 131736099 -23894021 + ORR1A2 LTR MaLR 1 143 -184 6 1590 281 244 85 49 chr4 131736100 131736182 -23893938 - PB1D10 SINE Alu -27 90 6 6 1590 242 310 60 34 chr4 131736182 131736213 -23893907 - ID_B1 SINE B4 -49 171 56 6 1590 374 310 35 0 chr4 131736426 131736539 -23893581 + RSINE1 SINE B4 4 120 -45 6 1590 21 36 0 0 chr4 131736558 131736586 -23893534 + AT_rich Low_complexity Low_complexity 1 28 0 6 1590 508 216 101 36 chr4 131736598 131736737 -23893383 - B1_Mus1 SINE Alu 0 148 1 6 1590 684 198 128 29 chr4 131736758 131736930 -23893190 - B3 SINE B2 -22 194 6 6 1590 233 329 58 12 chr4 131737003 131737089 -23893031 - B4A SINE B4 -201 91 2 6 1590 371 135 54 0 chr4 131738603 131738677 -23891443 + B1_Mur4 SINE Alu 73 150 0 6 1590 590 169 46 66 chr4 131738688 131738840 -23891280 + B1_Mur3 SINE Alu 1 149 0 6 1590 345 271 77 12 chr4 131738913 131739081 -23891039 + L1MC4a LINE L1 7038 7216 -666 6 1590 234 0 0 0 chr4 131739249 131739275 -23890845 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1590 474 227 154 16 chr4 131739609 131739797 -23890323 + L1MC4a LINE L1 7624 7837 -45 6 1590 681 247 108 0 chr4 131740105 131740291 -23889829 - ID_B1 SINE B4 -16 208 3 6 1590 234 0 0 0 chr4 131740305 131740331 -23889789 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1590 29 28 0 0 chr4 131740529 131740565 -23889555 + AT_rich Low_complexity Low_complexity 1 36 0 6 1590 519 194 9 44 chr4 131740689 131740802 -23889318 + B3 SINE B2 5 113 -103 6 1590 21 36 0 0 chr4 131740838 131740866 -23889254 + AT_rich Low_complexity Low_complexity 1 28 0 6 1590 1145 96 83 22 chr4 131740942 131741123 -23888997 + B2_Mm2 SINE B2 3 194 -1 6 1590 413 182 207 9 chr4 131741751 131741862 -23888258 - ID_B1 SINE B4 -4 220 88 6 1590 246 81 0 0 chr4 131742503 131742540 -23887580 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1590 204 125 0 0 chr4 131742629 131742661 -23887459 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1590 677 209 14 28 chr4 131743163 131743306 -23886814 + B1_Mur4 SINE Alu 2 142 -8 6 1590 252 0 0 0 chr4 131743422 131743450 -23886670 + (CAA)n Simple_repeat Simple_repeat 3 30 0 6 1590 1131 56 0 14 chr4 131743512 131743656 -23886464 + B1_Mus2 SINE Alu 1 142 -5 6 1590 457 284 95 0 chr4 131743913 131744061 -23886059 + B4A SINE B4 118 279 -13 6 1590 487 221 118 0 chr4 131744287 131744414 -23885706 + ORR1D1 LTR MaLR 1 142 -232 6 1590 510 17 0 0 chr4 131744416 131744475 -23885645 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1590 191 36 36 0 chr4 131744545 131744573 -23885547 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1590 1037 44 0 0 chr4 131744584 131744719 -23885401 + B1_Mus1 SINE Alu 6 140 -8 6 1590 510 271 25 44 chr4 131744915 131744934 -23885186 + ID_B1 SINE B4 70 224 0 6 1590 816 154 14 22 chr4 131744934 131745073 -23885047 + B1_Mur2 SINE Alu 12 149 0 7 1590 289 233 0 118 chr4 131745210 131745228 -23884892 + MT2B LTR ERVL 150 239 -362 7 1590 543 73 0 24 chr4 131745228 131745312 -23884808 + B1_Mus2 SINE Alu 1 82 -65 7 1590 687 256 19 74 chr4 131745375 131745590 -23884530 + B3 SINE B2 1 203 -13 7 1590 230 235 88 0 chr4 131745623 131745691 -23884429 + L1MC4 LINE L1 7202 7275 -767 7 1590 21 0 0 0 chr4 131745731 131745752 -23884368 + AT_rich Low_complexity Low_complexity 1 21 0 7 1590 554 264 7 45 chr4 131745752 131745907 -23884213 - B3A SINE B2 -30 168 20 7 1590 289 300 19 65 chr4 131745919 131746026 -23884094 - PB1D10 SINE Alu -10 107 6 7 1590 205 161 0 0 chr4 131746546 131746577 -23883543 + (CGGA)n Simple_repeat Simple_repeat 4 34 0 7 1590 1316 75 21 16 chr4 131746753 131746942 -23883178 + B2_Mm2 SINE B2 2 191 -4 7 1590 1461 29 18 0 chr4 131746946 131747106 -23883014 + B2_Mm1a SINE B2 1 160 -33 7 1590 279 71 0 0 chr4 131747106 131747148 -23882972 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 7 1590 1698 21 0 0 chr4 131747163 131747353 -23882767 + B2_Mm1a SINE B2 2 191 -2 7 1590 322 202 35 12 chr4 131747362 131747447 -23882673 + B1_Mur2 SINE Alu 29 115 -34 7 1590 310 299 43 86 chr4 131747433 131747572 -23882548 + B4A SINE B4 37 169 -123 7 1590 1503 53 21 0 chr4 131747595 131747783 -23882337 + B2_Mm1a SINE B2 2 193 0 7 1590 689 247 79 22 chr4 131747866 131748044 -23882076 - B3 SINE B2 -28 188 1 7 1590 329 295 25 59 chr4 131748080 131748199 -23881921 - B3A SINE B2 -42 156 42 7 1590 228 67 0 0 chr4 131748199 131748229 -23881891 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1590 213 121 0 0 chr4 131748252 131748285 -23881835 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 7 1590 1203 29 0 7 chr4 131748296 131748437 -23881683 - B1_Mus1 SINE Alu -7 141 2 7 1590 325 288 25 0 chr4 131748535 131748615 -23881505 - ID4_ SINE ID 0 83 2 7 1590 390 184 21 36 chr4 131748992 131749099 -23881021 + B1F SINE Alu 7 108 -41 7 1590 1104 58 22 0 chr4 131749264 131749403 -23880717 - B1_Mus1 SINE Alu -5 143 2 7 1590 481 240 39 8 chr4 131749560 131749690 -23880430 + ID_B1 SINE B4 86 219 -5 7 1590 1323 65 53 21 chr4 131749778 131749967 -23880153 + B2_Mm2 SINE B2 1 195 0 7 1590 308 330 41 50 chr4 131750012 131750133 -23879987 + B3A SINE B2 63 182 -16 7 1590 1196 54 0 0 chr4 131750170 131750317 -23879803 - B1_Mus1 SINE Alu 0 148 2 7 1590 244 333 0 44 chr4 131750438 131750529 -23879591 - PB1 SINE Alu -34 93 7 7 1590 344 220 42 52 chr4 131750709 131750805 -23879315 + PB1D9 SINE Alu 1 95 -25 7 1590 468 233 146 36 chr4 131750862 131751027 -23879093 + B3 SINE B2 17 199 -17 7 1590 261 265 21 108 chr4 131751073 131751086 -23879034 + MT2B LTR ERVL 156 160 -441 7 1590 477 220 34 0 chr4 131751086 131751191 -23878929 + B1_Mm SINE Alu 2 119 -1 7 1590 253 238 47 59 chr4 131751189 131751274 -23878846 + RSINE1 SINE B4 44 127 -38 7 1590 279 114 0 0 chr4 131751297 131751341 -23878779 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1590 1812 14 13 22 chr4 131751576 131751802 -23878318 - L1Md_F3 LINE L1 0 6584 6361 7 1590 236 271 58 23 chr4 131751851 131751938 -23878182 + B3 SINE B2 87 176 -40 7 1590 236 231 250 25 chr4 131752018 131752098 -23878022 - B2_Mm2 SINE B2 -97 98 1 7 1590 546 165 100 42 chr4 131752125 131752245 -23877875 + B1_Mur2 SINE Alu 5 131 -18 7 1590 1185 125 28 0 chr4 131752246 131752422 -23877698 + B2_Mm2 SINE B2 3 183 -12 7 1590 323 127 0 18 chr4 131752467 131752523 -23877597 + B2_Mm2 SINE B2 47 101 -94 7 1590 198 103 0 0 chr4 131752671 131752700 -23877420 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1590 1191 55 0 14 chr4 131752705 131752853 -23877267 - B1_Mus2 SINE Alu -1 146 1 7 1590 555 291 121 10 chr4 131752891 131753089 -23877031 + ID_B1 SINE B4 2 221 -3 7 1590 397 257 67 102 chr4 131753315 131753540 -23876580 - MER2 DNA MER2_type -127 218 2 7 1590 1280 74 80 0 chr4 131753603 131753779 -23876341 - B2_Mm2 SINE B2 -5 190 1 7 1590 506 201 174 48 chr4 131753924 131754091 -23876029 - B3A SINE B2 0 198 11 7 1590 309 225 69 14 chr4 131754137 131754209 -23875911 - RSINE1 SINE B4 -87 78 3 7 1590 361 306 53 46 chr4 131754539 131754690 -23875430 + RSINE1 SINE B4 14 165 0 7 1590 502 285 181 11 chr4 131754917 131755105 -23875015 - ID_B1 SINE B4 0 224 5 7 1590 304 120 20 0 chr4 131755327 131755377 -23874743 - B1_Mus2 SINE Alu -95 52 2 7 1590 564 234 65 14 chr4 131755377 131755516 -23874604 - B1_Mur2 SINE Alu -2 147 2 7 1590 305 273 46 35 chr4 131755577 131755664 -23874456 + PB1D7 SINE Alu 17 104 -13 7 1590 291 151 57 0 chr4 131755888 131755941 -23874179 + ID_B1 SINE B4 102 157 -67 7 1590 441 111 49 0 chr4 131755940 131756021 -23874099 + B2_Mm2 SINE B2 101 185 -10 7 1590 254 229 42 14 chr4 131756728 131756799 -23873321 - tRNA-Ala-GCY_ tRNA tRNA -1 74 2 7 1590 268 246 46 0 chr4 131756739 131756804 -23873316 - ID SINE ID -154 70 3 7 1590 237 342 38 0 chr4 131756924 131757003 -23873117 + ID_B1 SINE B4 16 97 -127 7 1590 252 0 0 0 chr4 131757171 131757199 -23872921 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1590 408 227 33 22 chr4 131757224 131757314 -23872806 + 4.5SRNA scRNA scRNA 3 93 -1 7 1590 456 238 38 9 chr4 131757315 131757421 -23872699 + B3 SINE B2 1 109 -107 7 1590 27 62 0 0 chr4 131757461 131757509 -23872611 + AT_rich Low_complexity Low_complexity 1 48 0 7 1590 515 232 112 0 chr4 131757514 131757639 -23872481 + B1_Mur1 SINE Alu 3 141 -8 7 1590 1241 89 60 11 chr4 131757859 131758041 -23872079 + B2_Mm2 SINE B2 3 193 -2 7 1590 1136 56 0 7 chr4 131758051 131758196 -23871924 + B1_Mus2 SINE Alu 2 145 -2 7 1590 240 59 0 0 chr4 131758196 131758230 -23871890 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1590 695 265 74 15 chr4 131758249 131758452 -23871668 + B3 SINE B2 2 216 0 7 1590 378 274 73 59 chr4 131758452 131758466 -23871654 + B4 SINE B4 72 87 -205 7 1590 582 216 69 0 chr4 131758466 131758596 -23871524 + B1_Mur4 SINE Alu 1 147 -1 7 1590 1197 114 251 19 chr4 131758597 131758856 -23871264 + ORR1A2 LTR MaLR 1 319 -8 7 1590 1405 76 27 0 chr4 131759020 131759205 -23870915 + B2_Mm2 SINE B2 1 190 -5 7 1590 545 199 213 17 chr4 131759278 131759452 -23870668 - B3 SINE B2 -8 208 1 7 1590 258 288 96 0 chr4 131759501 131759574 -23870546 + ID4_ SINE ID 4 83 0 7 1590 433 216 34 0 chr4 131761859 131761947 -23868173 - B1F1 SINE Alu -55 94 4 7 1590 225 267 33 16 chr4 131762029 131762090 -23868030 + MurSatRep1 Unknown Unknown 149 210 -1927 7 1590 777 233 74 0 chr4 131762108 131762297 -23867823 + B3 SINE B2 1 203 -13 7 1590 198 0 0 0 chr4 131762357 131762379 -23867741 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1590 541 178 0 61 chr4 131762400 131762514 -23867606 - PB1D9 SINE Alu -13 107 1 7 1590 1173 68 0 0 chr4 131762655 131762802 -23867318 + B1_Mus2 SINE Alu 1 147 0 7 1590 880 181 7 20 chr4 131762822 131762974 -23867146 + B1_Mur4 SINE Alu 1 150 0 7 1590 254 287 79 22 chr4 131763009 131763098 -23867022 + B4A SINE B4 50 143 -149 7 1590 228 241 37 0 chr4 131763119 131763173 -23866947 + ID_B1 SINE B4 130 185 -39 7 1590 332 195 122 0 chr4 131763201 131763283 -23866837 + B3 SINE B2 116 207 -9 7 1590 526 309 33 0 chr4 131763302 131763454 -23866666 + RSINE1 SINE B4 3 159 -6 7 1590 294 270 258 0 chr4 131763481 131763570 -23866550 + RSINE1 SINE B4 9 120 -45 7 1590 261 0 0 0 chr4 131763599 131763628 -23866492 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1590 1160 68 0 13 chr4 131763643 131763793 -23866327 + B1_Mus1 SINE Alu 1 148 0 7 1590 190 111 36 36 chr4 131763793 131763829 -23866291 + A-rich Low_complexity Low_complexity 5 41 0 7 1590 468 0 0 0 chr4 131763829 131763881 -23866239 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 7 1590 190 111 36 36 chr4 131763881 131763900 -23866220 + A-rich Low_complexity Low_complexity 42 60 0 7 1590 536 225 7 55 chr4 131764283 131764429 -23865691 + B1_Mur1 SINE Alu 3 141 -8 7 1590 482 272 0 0 chr4 131764732 131764835 -23865285 + PB1D9 SINE Alu 1 103 -17 7 1590 582 168 0 36 chr4 131764971 131765082 -23865038 - B1_Mur4 SINE Alu -24 126 20 7 1590 488 242 50 0 chr4 131765078 131765198 -23864922 - B1_Mur1 SINE Alu -23 126 1 7 1590 246 95 0 0 chr4 131766551 131766593 -23863527 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1590 27 0 0 0 chr4 131767615 131767642 -23862478 + GC_rich Low_complexity Low_complexity 1 27 0 7 1590 27 49 0 0 chr4 131767716 131767757 -23862363 + GC_rich Low_complexity Low_complexity 1 41 0 7 1590 22 0 0 0 chr4 131768121 131768143 -23861977 + GC_rich Low_complexity Low_complexity 1 22 0 7 1590 678 148 76 23 chr4 131769166 131769297 -23860823 - B1_Mus1 SINE Alu 0 148 11 7 1590 25 0 0 0 chr4 131769302 131769327 -23860793 + AT_rich Low_complexity Low_complexity 1 25 0 7 1590 1154 62 7 0 chr4 131769331 131769476 -23860644 + B1_Mus2 SINE Alu 1 146 -1 8 1590 1101 58 7 0 chr4 131770114 131770251 -23859869 + B1_Mm SINE Alu 1 138 -9 8 1590 279 79 0 0 chr4 131770269 131770307 -23859813 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 8 1590 436 179 36 0 chr4 131771473 131771557 -23858563 + B1_Mur4 SINE Alu 63 149 -1 8 1590 406 281 13 136 chr4 131771627 131771862 -23858258 + B3 SINE B2 1 206 -10 8 1590 498 217 0 55 chr4 131771867 131771994 -23858126 - PB1D9 SINE Alu 0 120 1 8 1590 522 237 7 29 chr4 131772023 131772162 -23857958 - B1_Mur4 SINE Alu 0 150 15 8 1590 313 235 11 23 chr4 131772161 131772180 -23857940 - ID_B1 SINE B4 -37 187 102 8 1590 323 224 0 15 chr4 131772180 131772248 -23857872 - PB1D10 SINE Alu -30 87 21 8 1590 515 108 0 35 chr4 131772296 131772382 -23857738 + B1_Mur3 SINE Alu 66 148 -1 8 1590 546 231 0 8 chr4 131772396 131772514 -23857606 + PB1D9 SINE Alu 1 117 -3 8 1590 388 244 48 40 chr4 131772595 131772719 -23857401 + ID_B1 SINE B4 90 214 -10 8 1590 573 262 28 14 chr4 131772739 131772882 -23857238 - B1_Mur1 SINE Alu -2 147 3 8 1590 306 208 152 30 chr4 131772890 131772989 -23857131 - PB1D10 SINE Alu -6 111 1 8 1590 261 75 0 0 chr4 131772999 131773039 -23857081 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1590 1184 54 0 20 chr4 131773039 131773189 -23856931 - B1_Mus2 SINE Alu 0 147 1 8 1590 508 193 28 0 chr4 131773245 131773354 -23856766 + B1_Mur2 SINE Alu 34 145 -4 8 1590 1503 63 16 0 chr4 131773355 131773545 -23856575 + B2_Mm2 SINE B2 3 195 0 8 1590 208 314 62 103 chr4 131773551 131773746 -23856374 - L2a LINE L2 -196 3230 3044 8 1590 339 311 57 0 chr4 131773888 131774010 -23856110 - ID_B1 SINE B4 -3 221 93 8 1590 453 36 0 0 chr4 131774350 131774405 -23855715 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1590 288 0 0 0 chr4 131774417 131774449 -23855671 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1590 673 128 0 0 chr4 131774452 131774561 -23855559 + ORR1A1 LTR MaLR 1 109 -218 8 1590 660 53 182 66 chr4 131774567 131774688 -23855432 + B1_Mus1 SINE Alu 6 140 -8 8 1590 1628 70 26 0 chr4 131774709 131774938 -23855182 + ORR1A1 LTR MaLR 112 346 0 8 1590 1332 110 16 0 chr4 131775052 131775243 -23854877 - B2_Mm2 SINE B2 -1 194 1 8 1590 465 316 75 19 chr4 131775246 131775459 -23854661 - B4A SINE B4 -67 225 1 8 1590 219 305 94 35 chr4 131775537 131775612 -23854508 + PB1D10 SINE Alu 1 82 -35 8 1590 1124 43 14 7 chr4 131775612 131775752 -23854368 + B1_Mus1 SINE Alu 1 141 -7 8 1590 234 0 0 0 chr4 131775752 131775778 -23854342 + (CTAA)n Simple_repeat Simple_repeat 3 28 0 8 1590 231 306 71 36 chr4 131776495 131776607 -23853513 - PB1D7 SINE Alu -3 117 2 8 1590 559 186 145 0 chr4 131776928 131777052 -23853068 - B1_Mus1 SINE Alu 0 148 7 8 1590 652 206 58 54 chr4 131777197 131777402 -23852718 + B3 SINE B2 5 210 -6 8 1590 692 247 6 12 chr4 131777427 131777591 -23852529 + RSINE1 SINE B4 3 165 0 8 1590 541 240 85 8 chr4 131777981 131778111 -23852009 + B1_Mur3 SINE Alu 1 140 -9 8 1590 1731 26 0 0 chr4 131778190 131778383 -23851737 + B2_Mm1a SINE B2 1 193 0 8 1590 272 242 115 52 chr4 131778452 131778548 -23851572 - Charlie4a DNA MER1_type -42 466 365 8 1590 976 85 21 14 chr4 131778561 131778704 -23851416 + B1_Mur4 SINE Alu 6 149 -1 8 1590 241 277 77 88 chr4 131778704 131778741 -23851379 - YREP_Mm Unknown Unknown -1499 311 134 8 1590 180 313 194 0 chr4 131778741 131778808 -23851312 + L2b LINE L2 3253 3332 -43 8 1590 885 201 0 0 chr4 131779374 131779518 -23850602 + RSINE1 SINE B4 3 146 -19 8 1590 360 0 0 0 chr4 131779525 131779565 -23850555 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1590 815 268 54 0 chr4 131779662 131779867 -23850253 - ID_B1 SINE B4 -6 218 3 8 1590 23 33 0 0 chr4 131780111 131780141 -23849979 + AT_rich Low_complexity Low_complexity 1 30 0 8 1590 465 19 0 0 chr4 131780690 131780744 -23849376 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1590 180 0 0 0 chr4 131782386 131782406 -23847714 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1590 478 268 40 24 chr4 131782806 131782932 -23847188 - B4 SINE B4 -2 290 163 8 1590 1099 235 16 25 chr4 131783341 131783585 -23846535 - B4A SINE B4 -48 244 3 8 1590 539 252 16 16 chr4 131783994 131784119 -23846001 + ID_B1 SINE B4 90 214 -10 8 1590 230 317 45 63 chr4 131784206 131784317 -23845803 - PB1D7 SINE Alu -10 110 2 8 1590 384 330 104 0 chr4 131784612 131784727 -23845393 + PB1 SINE Alu 1 127 0 8 1590 420 283 28 0 chr4 131784731 131784837 -23845283 + PB1D7 SINE Alu 2 110 -10 8 1590 596 177 112 30 chr4 131784894 131785028 -23845092 + B1_Mus2 SINE Alu 2 146 -1 8 1590 283 272 111 0 chr4 131785178 131785259 -23844861 - PB1D10 SINE Alu 0 117 28 8 1590 414 0 0 0 chr4 131785259 131785305 -23844815 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1590 234 0 0 0 chr4 131785305 131785330 -23844790 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1590 263 331 46 8 chr4 131785403 131785534 -23844586 + L2 LINE L2 2305 2440 -979 8 1590 561 244 94 25 chr4 131785586 131785735 -23844385 + B3A SINE B2 19 178 -20 8 1590 578 214 27 0 chr4 131785735 131785847 -23844273 + MTD LTR MaLR 1 115 -304 8 1590 328 239 45 18 chr4 131785874 131785985 -23844135 + RLTR12B LTR ERVK 1 114 -414 8 1590 844 47 0 0 chr4 131785991 131786098 -23844022 - B1_Mus2 SINE Alu 0 147 41 8 1590 268 266 180 43 chr4 131786104 131786265 -23843855 + RLTR12B LTR ERVK 96 278 -250 8 1590 1220 55 0 0 chr4 131786303 131786448 -23843672 - B1_Mus2 SINE Alu -2 145 1 8 1590 411 224 11 67 chr4 131786492 131786602 -23843518 + MTD LTR MaLR 273 404 -15 8 1590 239 250 130 0 chr4 131786669 131786761 -23843359 + B4 SINE B4 3 106 -186 8 1590 294 217 165 13 chr4 131786775 131786880 -23843240 + MIRc SINE MIR 103 217 -51 8 1590 21 0 0 0 chr4 131787339 131787360 -23842760 + AT_rich Low_complexity Low_complexity 1 21 0 8 1590 222 125 0 91 chr4 131788598 131788642 -23841478 + B3A SINE B2 1 40 -158 8 1590 1007 127 32 32 chr4 131788750 131788937 -23841183 + B2_Mm2 SINE B2 3 189 -6 8 1590 260 244 200 53 chr4 131788942 131789037 -23841083 + PB1D9 SINE Alu 12 120 0 8 1590 352 210 62 0 chr4 131789048 131789129 -23840991 + B1F2 SINE Alu 63 148 -1 8 1590 868 177 0 7 chr4 131789465 131789613 -23840507 + B1_Mur4 SINE Alu 4 150 0 8 1590 252 210 0 0 chr4 131789614 131789695 -23840425 + A-rich Low_complexity Low_complexity 1 81 0 8 1590 298 228 188 89 chr4 131789716 131789817 -23840303 + PB1D9 SINE Alu 2 112 -8 8 1590 337 216 73 0 chr4 131789910 131790007 -23840113 + B1F SINE Alu 42 149 0 8 1590 981 120 127 0 chr4 131790038 131790196 -23839924 + B2_Mm1t SINE B2 2 179 -14 8 1590 311 106 410 19 chr4 131790243 131790348 -23839772 + B2_Mm2 SINE B2 47 192 -3 8 1590 467 285 0 0 chr4 131790451 131790560 -23839560 + B1F SINE Alu 3 111 -9 8 1590 449 159 0 44 chr4 131791100 131791197 -23838923 + B1_Mur1 SINE Alu 31 149 0 8 1590 267 309 37 0 chr4 131791279 131791360 -23838760 - ID_B1 SINE B4 -28 196 113 8 1590 22 0 0 0 chr4 131791591 131791613 -23838507 + AT_rich Low_complexity Low_complexity 1 22 0 8 1590 320 275 101 0 chr4 131792021 131792130 -23837990 - PB1D7 SINE Alu 0 120 1 8 1590 999 239 29 19 chr4 131792159 131792368 -23837752 - B3 SINE B2 0 216 6 8 1590 273 296 25 0 chr4 131792814 131792895 -23837225 + ID2 SINE ID 1 83 0 8 1590 292 88 35 0 chr4 131793335 131793392 -23836728 + (TGGGGG)n Simple_repeat Simple_repeat 4 62 0 8 1590 265 355 45 9 chr4 131793473 131793584 -23836536 + B4A SINE B4 8 122 -170 8 1590 736 152 56 28 chr4 131793595 131793737 -23836383 - B1_Mur4 SINE Alu -1 149 4 8 1590 254 220 10 29 chr4 131793842 131793945 -23836175 + (CA)n Simple_repeat Simple_repeat 2 102 0 8 1590 319 206 16 44 chr4 131793970 131794153 -23835967 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1590 243 225 0 53 chr4 131794167 131794242 -23835878 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 1590 556 178 40 56 chr4 131794261 131794365 -23835755 - B3 SINE B2 0 216 115 8 1590 1340 278 76 16 chr4 131794365 131794815 -23835305 + RLTR20A2 LTR ERVK 1 477 -101 8 1590 351 0 0 0 chr4 131794819 131794858 -23835262 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1590 693 171 17 8 chr4 131794952 131795070 -23835050 - B3 SINE B2 -97 119 1 8 1590 1317 88 16 6 chr4 131795102 131795284 -23834836 - B2_Mm2 SINE B2 -11 184 1 8 1590 207 69 0 0 chr4 131795471 131795500 -23834620 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 8 1590 1309 73 51 0 chr4 131795516 131795694 -23834426 - B2_Mm2 SINE B2 -7 188 2 8 1590 815 224 0 0 chr4 131795697 131795844 -23834276 - B1_Mur1 SINE Alu -2 147 1 8 1590 299 264 32 106 chr4 131795738 131795861 -23834259 - MT2B LTR ERVL -336 265 152 8 1590 599 226 35 28 chr4 131795869 131796010 -23834110 - B1_Mur1 SINE Alu -2 147 6 8 1590 1224 54 0 0 chr4 131796028 131796175 -23833945 - B1_Mus2 SINE Alu 0 147 1 8 1590 2226 144 170 22 chr4 131796176 131796636 -23833484 + RMER4B LTR ERVK 58 585 0 8 1590 846 196 14 0 chr4 131796888 131797031 -23833089 - B1_Mus2 SINE Alu 0 147 3 8 1590 306 217 283 0 chr4 131797445 131797537 -23832583 - PB1D7 SINE Alu -2 118 1 8 1590 263 286 49 119 chr4 131797537 131797634 -23832486 - B4A SINE B4 -205 87 1 8 1590 218 281 65 33 chr4 131797914 131798006 -23832114 + RSINE1 SINE B4 37 131 -34 8 1590 207 0 0 0 chr4 131798038 131798061 -23832059 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1590 1215 41 0 20 chr4 131798488 131798637 -23831483 - B1_Mus2 SINE Alu 0 147 2 9 1590 252 59 0 0 chr4 131798664 131798698 -23831422 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 9 1590 350 271 24 0 chr4 131798701 131798786 -23831334 - ID_B1 SINE B4 -1 223 137 9 1590 222 278 121 11 chr4 131798705 131798796 -23831324 - B1F2 SINE Alu -5 144 44 9 1590 26 0 0 0 chr4 131798829 131798855 -23831265 + AT_rich Low_complexity Low_complexity 1 26 0 9 1590 967 186 6 29 chr4 131798855 131799027 -23831093 - B3 SINE B2 0 216 49 9 1590 1102 52 0 0 chr4 131799051 131799186 -23830934 + B1_Mus1 SINE Alu 5 139 -9 9 1590 486 0 0 0 chr4 131799186 131799240 -23830880 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1590 1353 86 43 5 chr4 131799254 131799441 -23830679 + B2_Mm2 SINE B2 1 194 -1 9 1590 281 235 22 90 chr4 131799577 131799666 -23830454 - B4 SINE B4 -209 83 1 9 1590 356 272 0 0 chr4 131799679 131799760 -23830360 - ID4 SINE ID -1 82 2 9 1590 501 281 65 22 chr4 131799835 131799973 -23830147 - ID_B1 SINE B4 -2 222 79 9 1590 275 312 0 15 chr4 131800071 131800136 -23829984 - ID4_ SINE ID -13 70 7 9 1590 1103 111 35 0 chr4 131800348 131800362 -23829758 - B2_Mm1a SINE B2 -15 178 162 9 1590 342 0 0 0 chr4 131800362 131800400 -23829720 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 1590 1103 111 35 0 chr4 131800400 131800557 -23829563 - B2_Mm1a SINE B2 -32 161 2 9 1590 570 169 200 8 chr4 131801364 131801489 -23828631 - B1_Mur3 SINE Alu 0 149 1 9 1590 502 207 36 9 chr4 131801492 131801604 -23828516 - PB1D9 SINE Alu -2 118 4 9 1590 217 276 24 84 chr4 131801754 131801837 -23828283 + ID4 SINE ID 4 81 -2 9 1590 822 209 22 28 chr4 131802320 131802502 -23827618 - B3A SINE B2 -16 182 2 9 1590 1007 204 23 0 chr4 131802523 131802739 -23827381 - URR1B DNA MER1_type -4 221 1 9 1590 292 279 13 0 chr4 131803042 131803121 -23826999 + 5S rRNA rRNA 7 86 -35 9 1590 363 273 54 9 chr4 131803370 131803481 -23826639 + PB1D10 SINE Alu 1 116 -1 9 1590 265 325 52 0 chr4 131803637 131803714 -23826406 - ID4_ SINE ID -1 82 2 9 1590 266 305 24 0 chr4 131803940 131804022 -23826098 - BC1_Mm scRNA scRNA -63 89 6 9 1590 1167 50 0 0 chr4 131804063 131804202 -23825918 - B1_Mus1 SINE Alu -6 142 4 9 1590 285 234 231 9 chr4 131804202 131804310 -23825810 - B4A SINE B4 -54 238 107 9 1590 459 212 80 3 chr4 131804215 131804329 -23825791 - PB1 SINE Alu -2 125 2 9 1590 673 204 51 0 chr4 131804386 131804523 -23825597 + B1_Mur3 SINE Alu 3 146 -3 9 1590 213 39 0 0 chr4 131804531 131804557 -23825563 + (CACG)n Simple_repeat Simple_repeat 3 28 0 9 1590 1134 49 7 20 chr4 131805010 131805157 -23824963 + B1_Mus2 SINE Alu 1 145 -2 9 1590 208 0 62 0 chr4 131805157 131805189 -23824931 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1590 447 236 150 31 chr4 131805203 131805330 -23824790 + B1_Mur4 SINE Alu 3 144 -6 9 1590 267 162 362 0 chr4 131805570 131805650 -23824470 + B1_Mus1 SINE Alu 1 109 -39 9 1590 1272 64 6 12 chr4 131805783 131805939 -23824181 + B2_Mm1a SINE B2 2 158 -35 9 1590 225 0 0 0 chr4 131805939 131805964 -23824156 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 9 1590 1272 64 6 12 chr4 131805964 131805980 -23824140 + B2_Mm1a SINE B2 159 173 -20 9 1590 645 219 28 28 chr4 131805984 131806166 -23823954 + B3 SINE B2 11 189 -6 9 1590 235 232 29 0 chr4 131806281 131806350 -23823770 + B2_Mm2 SINE B2 1 71 -124 9 1590 704 146 0 0 chr4 131806310 131806413 -23823707 - B1_Mur4 SINE Alu -47 103 1 9 1590 397 308 0 25 chr4 131806437 131806557 -23823563 + PB1D10 SINE Alu 1 117 0 9 1590 809 161 8 8 chr4 131806611 131806742 -23823378 - B1_Mus1 SINE Alu -16 132 2 9 1590 1211 41 0 7 chr4 131806781 131806928 -23823192 - B1_Mm SINE Alu 0 147 2 9 1590 219 391 0 0 chr4 131806958 131807027 -23823093 + ID4 SINE ID 11 79 -4 9 1590 297 316 74 49 chr4 131807924 131808087 -23822033 + MER63A DNA AcHobo 1 167 -43 9 1590 651 216 16 0 chr4 131808100 131808225 -23821895 - B1_Mur1 SINE Alu 0 149 23 9 1590 251 272 57 28 chr4 131808245 131808351 -23821769 - PB1D10 SINE Alu -8 109 1 9 1590 522 172 164 0 chr4 131808585 131808701 -23821419 - B1_Mus2 SINE Alu -5 142 8 9 1590 24 0 0 0 chr4 131808716 131808740 -23821380 + AT_rich Low_complexity Low_complexity 1 24 0 9 1590 1222 48 14 0 chr4 131808740 131808887 -23821233 + B1_Mur4 SINE Alu 2 150 0 9 1590 261 182 912 0 chr4 131808899 131809011 -23821109 - B3 SINE B2 -1 215 2 9 1590 295 319 10 31 chr4 131809011 131809096 -23821024 - PB1D7 SINE Alu -37 83 1 9 1590 621 237 23 0 chr4 131809117 131809248 -23820872 - ID_B1 SINE B4 -1 223 90 9 1590 323 256 350 0 chr4 131809401 131809518 -23820602 - RSINE1 SINE B4 -6 159 2 9 1590 211 182 0 0 chr4 131809800 131809833 -23820287 + polypurine Low_complexity Low_complexity 4 36 0 9 1590 1110 63 7 0 chr4 131810744 131810886 -23819234 - B1_Mus2 SINE Alu -4 143 1 9 1590 528 160 21 6 chr4 131810925 131811026 -23819094 - B1_Mur4 SINE Alu 0 150 23 9 1590 957 93 21 0 chr4 131811037 131811177 -23818943 - B2_Mm2 SINE B2 -5 190 48 9 1590 694 165 104 8 chr4 131811192 131811326 -23818794 - B1_Mus2 SINE Alu 0 147 1 9 1590 1269 63 115 0 chr4 131811349 131811523 -23818597 - B2_Mm2 SINE B2 0 195 2 9 1590 287 246 0 0 chr4 131811527 131811590 -23818530 - PB1D10 SINE Alu -7 120 66 9 1590 183 42 0 0 chr4 131811739 131811763 -23818357 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1590 666 11 22 11 chr4 131811960 131812052 -23818068 + (TG)n Simple_repeat Simple_repeat 2 94 0 9 1590 376 298 95 17 chr4 131812660 131812776 -23817344 - ID_B1 SINE B4 -38 186 62 9 1590 833 244 53 10 chr4 131812807 131813014 -23817106 + B3 SINE B2 1 216 0 9 1590 1100 83 28 0 chr4 131813042 131813186 -23816934 - B1_Mus1 SINE Alu 0 148 1 9 1590 373 236 56 0 chr4 131813190 131813262 -23816858 - B1_Mur1 SINE Alu -5 144 69 9 1590 766 190 7 21 chr4 131813272 131813417 -23816703 - B1_Mur3 SINE Alu -2 147 5 9 1590 433 252 92 42 chr4 131813550 131813670 -23816450 - B1F SINE Alu -11 138 13 9 1590 806 155 0 30 chr4 131813688 131813821 -23816299 - B1_Mus1 SINE Alu -15 133 5 9 1590 212 287 86 69 chr4 131814502 131814515 -23815605 - PB1D9 SINE Alu -2 118 1 9 1590 353 301 48 0 chr4 131814515 131814618 -23815502 - ID_B1 SINE B4 -35 189 82 9 1590 494 227 1 16 chr4 131814627 131814741 -23815379 - PB1D10 SINE Alu -9 108 2 9 1590 257 346 27 63 chr4 131814767 131814878 -23815242 + RSINE1 SINE B4 44 150 -15 9 1590 364 294 97 10 chr4 131814947 131815050 -23815070 + ID_B1 SINE B4 113 224 0 9 1590 458 289 12 43 chr4 131815075 131815238 -23814882 + RSINE1 SINE B4 5 162 -3 9 1590 264 258 79 77 chr4 131815282 131815402 -23814718 - B1F2 SINE Alu -3 117 3 9 1590 384 293 60 0 chr4 131815420 131815536 -23814584 + B1F2 SINE Alu 27 149 0 9 1590 348 279 11 3 chr4 131815566 131815680 -23814440 + PB1D10 SINE Alu 2 118 -2 9 1590 334 185 35 47 chr4 131815700 131815785 -23814335 + PB1D9 SINE Alu 36 119 -1 9 1590 588 176 28 9 chr4 131815789 131815898 -23814222 + PB1D9 SINE Alu 1 111 -9 9 1590 293 151 0 0 chr4 131815915 131815968 -23814152 + B1_Mur3 SINE Alu 94 146 -3 9 1590 261 0 0 0 chr4 131816796 131816825 -23813295 + (TCC)n Simple_repeat Simple_repeat 2 30 0 9 1590 32 103 0 0 chr4 131817112 131817228 -23812892 + GC_rich Low_complexity Low_complexity 1 116 0 9 1590 240 147 19 47 chr4 131817267 131817374 -23812746 + C-rich Low_complexity Low_complexity 5 108 0 9 1590 235 49 24 24 chr4 131817414 131817456 -23812664 + (CGGG)n Simple_repeat Simple_repeat 1 42 0 9 1590 189 121 0 0 chr4 131817474 131817507 -23812613 + (CCG)n Simple_repeat Simple_repeat 2 34 0 9 1590 22 35 0 0 chr4 131817526 131817555 -23812565 + GC_rich Low_complexity Low_complexity 1 29 0 9 1590 512 151 311 0 chr4 131818192 131818298 -23811822 + B1_Mur1 SINE Alu 10 148 -1 9 1590 1045 65 7 14 chr4 131818547 131818688 -23811432 - B1_Mus1 SINE Alu 0 148 9 9 1590 1226 90 79 0 chr4 131818733 131818910 -23811210 - B2_Mm2 SINE B2 -3 192 2 9 1590 1537 72 0 5 chr4 131818910 131819105 -23811015 - B2_Mm2 SINE B2 0 195 2 9 1590 1147 69 14 0 chr4 131819108 131819253 -23810867 - B1_Mm SINE Alu 0 147 1 9 1590 754 234 25 20 chr4 131819317 131819513 -23810607 + B3A SINE B2 1 197 -1 9 1590 1006 90 7 14 chr4 131819520 131819667 -23810453 + B2_Mm2 SINE B2 1 146 -49 9 1590 537 136 136 0 chr4 131820234 131820337 -23809783 + B1_Mur4 SINE Alu 34 150 0 9 1590 268 78 59 0 chr4 131820337 131820388 -23809732 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 9 1590 238 256 51 82 chr4 131820390 131820488 -23809632 + MT2B LTR ERVL 159 253 -348 9 1590 343 208 38 38 chr4 131820873 131820953 -23809167 + B1F SINE Alu 19 98 -51 9 1590 1087 96 139 0 chr4 131820959 131821125 -23808995 - B2_Mm1t SINE B2 -4 189 1 9 1590 663 251 101 74 chr4 131821134 131821323 -23808797 - B3 SINE B2 0 195 2 9 1590 360 111 0 0 chr4 131821567 131821621 -23808499 + (TCC)n Simple_repeat Simple_repeat 3 56 0 1 1590 22 0 0 0 chr4 131821621 131821643 -23808477 + AT_rich Low_complexity Low_complexity 1 22 0 1 1590 2063 87 83 46 chr4 131821678 131822026 -23808094 - RLTR10B2 LTR ERVK 0 365 5 1 1590 285 28 0 0 chr4 131822025 131822061 -23808059 - RLTR10B2 LTR ERVK -256 36 1 1 1590 799 112 24 16 chr4 131822061 131822177 -23807943 - B1_Mm SINE Alu -30 117 1 1 1590 427 220 0 119 chr4 131822059 131822193 -23807927 - MT2B LTR ERVL -333 268 151 1 1590 2395 112 123 43 chr4 131822204 131822644 -23807476 + MT2C_Mm LTR ERVL 1 475 0 1 1590 244 282 208 17 chr4 131823156 131823217 -23806903 + B4A SINE B4 47 184 -108 1 1590 470 131 24 0 chr4 131823217 131823301 -23806819 + PB1D9 SINE Alu 35 120 0 1 1590 244 282 208 17 chr4 131823301 131823329 -23806791 + B4A SINE B4 185 252 -40 1 1590 228 191 48 0 chr4 131823363 131823405 -23806715 + B1_Mur3 SINE Alu 55 98 -51 1 1590 467 198 110 0 chr4 131823519 131823610 -23806510 - PB1D9 SINE Alu -11 109 9 1 1590 743 80 113 113 chr4 131823609 131823712 -23806408 + B1_Mus1 SINE Alu 8 122 -26 1 1590 3784 50 33 0 chr4 131823712 131824172 -23805948 + MT2C_Mm LTR ERVL 1 475 0 1 1590 743 80 113 113 chr4 131824172 131824209 -23805911 + B1_Mus1 SINE Alu 123 148 0 1 1590 239 167 71 36 chr4 131824350 131824406 -23805714 - B3 SINE B2 -158 58 1 1 1590 21 0 0 0 chr4 131824501 131824522 -23805598 + AT_rich Low_complexity Low_complexity 1 21 0 1 1590 331 262 38 0 chr4 131824533 131824613 -23805507 - RSINE1 SINE B4 -24 141 59 1 1590 360 0 0 0 chr4 131824614 131824654 -23805466 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1590 341 214 170 28 chr4 131824664 131824770 -23805350 + B1_Mus2 SINE Alu 27 147 0 1 1590 1107 94 45 40 chr4 131824878 131825055 -23805065 + B2_Mm2 SINE B2 3 180 -15 1 1590 348 24 0 0 chr4 131825055 131825096 -23805024 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 1 1590 508 226 10 10 chr4 131825261 131825364 -23804756 + B3 SINE B2 2 104 -112 1 1590 1457 75 5 0 chr4 131825365 131825552 -23804568 - B2_Mm1a SINE B2 -4 189 2 1 1590 953 130 7 0 chr4 131825688 131825834 -23804286 - B1_Mm SINE Alu 0 147 1 1 1590 222 171 24 24 chr4 131826556 131826598 -23803522 - B3A SINE B2 -118 80 39 1 1590 1237 41 0 0 chr4 131826765 131826911 -23803209 + B1_Mus2 SINE Alu 2 147 0 1 1590 24 0 0 0 chr4 131826911 131826935 -23803185 + AT_rich Low_complexity Low_complexity 1 24 0 1 1590 407 184 302 17 chr4 131826935 131827051 -23803069 + B1F SINE Alu 1 149 0 1 1590 235 305 105 0 chr4 131827056 131827161 -23802959 + PB1D10 SINE Alu 1 116 -1 1 1590 249 226 97 0 chr4 131827658 131827720 -23802400 - PB1D10 SINE Alu -17 100 33 1 1590 270 0 0 0 chr4 131827727 131827757 -23802363 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1590 1050 70 21 14 chr4 131827757 131827902 -23802218 - B2_Mm2 SINE B2 -49 146 1 1 1590 22 56 0 0 chr4 131827910 131827946 -23802174 + AT_rich Low_complexity Low_complexity 1 36 0 1 1590 1135 82 0 0 chr4 131828339 131828486 -23801634 + B1_Mus2 SINE Alu 1 147 0 1 1590 291 114 0 0 chr4 131828486 131828530 -23801590 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1590 416 278 111 0 chr4 131828611 131828737 -23801383 - B1_Mur1 SINE Alu -5 144 5 1 1590 1103 78 21 0 chr4 131828914 131829056 -23801064 - B1_Mus1 SINE Alu -2 146 2 1 1590 207 0 0 0 chr4 131829120 131829143 -23800977 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1590 884 217 35 0 chr4 131829222 131829425 -23800695 + B3 SINE B2 1 210 -6 1 1590 36 0 0 0 chr4 131831631 131831667 -23798453 + AT_rich Low_complexity Low_complexity 1 36 0 1 1590 252 0 0 0 chr4 131831844 131831872 -23798248 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1590 781 126 29 7 chr4 131831872 131831997 -23798123 - B1_Mus2 SINE Alu -10 137 9 1 1590 580 207 25 8 chr4 131832259 131832381 -23797739 - B1_Mur1 SINE Alu -25 124 1 1 1590 28 0 0 0 chr4 131832508 131832536 -23797584 + AT_rich Low_complexity Low_complexity 1 28 0 1 1590 285 204 0 0 chr4 131832600 131832654 -23797466 + ID_B1 SINE B4 104 157 -67 1 1590 265 253 141 24 chr4 131832654 131832685 -23797435 + PB1D10 SINE Alu 23 117 0 1 1590 527 254 18 0 chr4 131832698 131832812 -23797308 + RSINE1 SINE B4 8 123 -42 1 1590 546 137 40 40 chr4 131833072 131833171 -23796949 - B1_Mur4 SINE Alu -10 140 42 1 1590 735 224 124 11 chr4 131833171 131833356 -23796764 - B3 SINE B2 -1 215 10 1 1590 712 241 36 10 chr4 131833633 131833826 -23796294 - B3A SINE B2 0 198 1 1 1590 857 206 106 0 chr4 131833834 131834033 -23796087 - ID_B1 SINE B4 -3 221 2 1 1590 439 184 28 7 chr4 131834311 131834431 -23795689 + CT-rich Low_complexity Low_complexity 23 146 0 1 1590 1017 69 69 0 chr4 131834431 131834562 -23795558 - B1_Mus2 SINE Alu -6 141 2 1 1590 439 184 28 7 chr4 131834562 131834583 -23795537 + polypyrimidine Low_complexity Low_complexity 2 22 0 1 1590 436 209 6 210 chr4 131834584 131834760 -23795360 - B1_Mur3 SINE Alu -9 140 1 1 1590 483 223 19 19 chr4 131834766 131834871 -23795249 - PB1 SINE Alu -2 125 21 1 1590 408 327 122 25 chr4 131834871 131834969 -23795151 - ID_B1 SINE B4 0 223 1 1 1590 411 287 112 9 chr4 131835016 131835132 -23794988 + RSINE1 SINE B4 3 130 -35 1 1590 371 318 22 52 chr4 131835223 131835359 -23794761 + B1F1 SINE Alu 14 145 -4 1 1590 497 227 124 8 chr4 131835359 131835488 -23794632 + B1F SINE Alu 3 146 -3 1 1590 576 260 47 8 chr4 131835603 131835731 -23794389 + B1_Mur2 SINE Alu 17 149 0 1 1590 476 144 89 0 chr4 131835767 131835857 -23794263 + PB1D9 SINE Alu 23 120 0 1 1590 913 146 7 14 chr4 131836052 131836198 -23793922 + B1_Mur4 SINE Alu 1 145 -5 1 1590 1071 140 42 36 chr4 131836385 131836578 -23793542 + B2_Mm2 SINE B2 2 195 0 1 1590 264 122 0 0 chr4 131836586 131836627 -23793493 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1590 1227 54 0 0 chr4 131836627 131836774 -23793346 - B1_Mus1 SINE Alu 0 148 2 1 1590 236 300 0 0 chr4 131837056 131837116 -23793004 + CT-rich Low_complexity Low_complexity 2 61 0 1 1590 568 226 0 0 chr4 131837116 131837222 -23792898 - PB1D9 SINE Alu 0 120 15 1 1590 238 295 72 93 chr4 131837147 131837244 -23792876 - MT2B LTR ERVL -357 244 150 1 1590 494 89 76 0 chr4 131837233 131837312 -23792808 + 4.5SRNA scRNA scRNA 1 85 -9 1 1590 1037 99 35 0 chr4 131837372 131837514 -23792606 - B1_Mus1 SINE Alu 0 148 2 1 1590 363 217 0 14 chr4 131837748 131837818 -23792302 - ID4 SINE ID -11 72 4 1 1590 187 280 127 27 chr4 131838739 131838849 -23791271 + MIR SINE MIR 20 140 -122 1 1590 1467 63 0 10 chr4 131839110 131839302 -23790818 - B2_Mm2 SINE B2 -2 193 4 1 1590 267 176 226 21 chr4 131839584 131839677 -23790443 + PB1D10 SINE Alu 5 116 -1 1 1590 488 297 92 26 chr4 131839677 131839829 -23790291 + RSINE1 SINE B4 3 164 -1 1 1590 675 175 33 0 chr4 131839843 131839963 -23790157 + B1_Mur2 SINE Alu 21 144 -5 1 1590 260 301 82 0 chr4 131840000 131840073 -23790047 - ID4 SINE ID -4 79 1 1 1590 318 283 43 34 chr4 131840217 131840322 -23789798 - L1M5 LINE L1 -2956 3190 3085 1 1590 1118 68 7 0 chr4 131840322 131840469 -23789651 - B1_Mus1 SINE Alu 0 148 1 1 1590 318 283 43 34 chr4 131840469 131840480 -23789640 - L1M5 LINE L1 -3062 3084 3074 1 1590 273 98 0 0 chr4 131840498 131840539 -23789581 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1 1590 446 187 154 10 chr4 131840541 131840663 -23789457 - B1_Mus2 SINE Alu 0 147 28 1 1590 281 238 11 81 chr4 131840592 131840679 -23789441 - RLTR25B LTR ERVK -530 498 418 1 1590 691 274 34 6 chr4 131841115 131841291 -23788829 + B3A SINE B2 2 182 -16 1 1590 888 239 50 0 chr4 131841315 131841516 -23788604 + B3 SINE B2 1 211 -5 1 1590 32 43 0 0 chr4 131841518 131841564 -23788556 + AT_rich Low_complexity Low_complexity 1 46 0 1 1590 684 230 57 7 chr4 131841568 131841708 -23788412 + B3 SINE B2 36 182 -34 1 1590 208 386 59 24 chr4 131841767 131841852 -23788268 + MIRc SINE MIR 17 104 -164 1 1590 383 318 124 38 chr4 131841901 131842110 -23788010 + B4 SINE B4 6 232 -60 1 1590 1172 68 0 0 chr4 131842157 131842303 -23787817 + B1_Mus2 SINE Alu 2 147 0 1 1590 180 0 0 0 chr4 131842303 131842323 -23787797 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1590 775 211 0 55 chr4 131842328 131842493 -23787627 + B3A SINE B2 5 160 -38 1 1590 730 164 57 43 chr4 131842500 131842640 -23787480 + B1_Mur1 SINE Alu 7 148 -1 1 1590 770 168 0 0 chr4 131842641 131842754 -23787366 + PB1D9 SINE Alu 1 113 -7 1 1590 234 191 0 0 chr4 131842785 131842832 -23787288 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1590 1253 91 0 0 chr4 131842852 131843017 -23787103 - B2_Mm2 SINE B2 -30 165 1 1 1590 453 263 30 0 chr4 131843064 131843163 -23786957 + PB1D10 SINE Alu 3 104 -13 1 1590 951 144 63 42 chr4 131843165 131843317 -23786803 + B2_Mm2 SINE B2 2 159 -36 1 1590 432 0 0 0 chr4 131843317 131843365 -23786755 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 1590 951 144 63 42 chr4 131843365 131843401 -23786719 + B2_Mm2 SINE B2 160 194 -1 1 1590 319 209 60 0 chr4 131843414 131843481 -23786639 + B1F2 SINE Alu 2 72 -77 1 1590 4966 74 50 28 chr4 131843491 131843547 -23786573 - MusHAL1 LINE L1 0 2712 2660 1 1590 1476 64 16 0 chr4 131843547 131843734 -23786386 - B2_Mm2 SINE B2 -4 191 2 1 1590 4966 74 50 28 chr4 131843734 131844067 -23786053 - MusHAL1 LINE L1 -53 2659 2332 1 1590 1608 52 0 0 chr4 131844067 131844258 -23785862 + B2_Mm1t SINE B2 1 191 -2 1 1590 4966 74 50 28 chr4 131844258 131844620 -23785500 - MusHAL1 LINE L1 -381 2331 1943 1 1590 553 183 0 0 chr4 131844620 131844713 -23785407 + B1_Mur3 SINE Alu 57 149 0 1 1590 644 254 66 49 chr4 131845732 131846018 -23784102 + B4A SINE B4 2 292 0 1 1590 227 185 36 18 chr4 131846018 131846073 -23784047 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 1590 22 35 0 0 chr4 131846362 131846391 -23783729 + AT_rich Low_complexity Low_complexity 1 29 0 1 1590 186 71 0 0 chr4 131846478 131846506 -23783614 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 1 1590 736 166 17 22 chr4 131846525 131846704 -23783416 + GA-rich Low_complexity Low_complexity 2 179 0 1 1590 391 205 71 12 chr4 131846708 131846792 -23783328 - PB1D9 SINE Alu -30 90 2 1 1590 1114 102 0 0 chr4 131846829 131846976 -23783144 + B1_Mus1 SINE Alu 1 147 -1 1 1590 696 235 56 41 chr4 131847123 131847318 -23782802 + B3A SINE B2 1 198 0 1 1590 828 188 94 31 chr4 131847319 131847479 -23782641 + B3 SINE B2 4 181 -35 1 1590 261 0 0 0 chr4 131847479 131847508 -23782612 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1 1590 828 188 94 31 chr4 131847508 131847539 -23782581 + B3 SINE B2 182 206 -10 1 1590 266 213 43 0 chr4 131847594 131847641 -23782479 + ID4_ SINE ID 6 54 -29 1 1590 615 27 0 0 chr4 131849267 131849340 -23780780 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1590 180 0 0 0 chr4 131849392 131849412 -23780708 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1590 270 0 0 0 chr4 131849431 131849461 -23780659 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1590 406 264 122 16 chr4 131849489 131849612 -23780508 - ID_B1 SINE B4 -8 216 81 1 1590 998 137 7 0 chr4 131850589 131850735 -23779385 - B1_Mus1 SINE Alu -1 147 1 1 1590 432 0 0 0 chr4 131850813 131850861 -23779259 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1590 978 253 89 8 chr4 131850885 131851144 -23778976 - B4 SINE B4 -12 280 1 1 1590 490 167 246 40 chr4 131851563 131851738 -23778382 + RMER15 LTR ERVL 325 535 -40 1 1590 600 249 132 50 chr4 131852030 131852212 -23777908 - B3 SINE B2 -19 197 1 1 1590 761 177 7 45 chr4 131852222 131852376 -23777744 - B1_Mur2 SINE Alu 0 149 2 1 1590 261 0 0 0 chr4 131852539 131852568 -23777552 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1590 1230 61 0 0 chr4 131852568 131852716 -23777404 - B1_Mus1 SINE Alu 0 148 1 1 1590 259 271 20 141 chr4 131852732 131852831 -23777289 + MT2B LTR ERVL 154 240 -361 1 1590 523 252 33 8 chr4 131852752 131852872 -23777248 + B1_Mus1 SINE Alu 6 128 -20 1 1590 216 122 0 0 chr4 131852872 131852913 -23777207 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1590 397 246 0 14 chr4 131852957 131853031 -23777089 - PB1D10 SINE Alu -39 78 6 1 1590 656 228 37 0 chr4 131853149 131853285 -23776835 + B3 SINE B2 46 186 -30 1 1590 390 302 46 92 chr4 131853286 131853304 -23776816 + B4 SINE B4 74 219 -73 1 1590 781 197 14 14 chr4 131853304 131853439 -23776681 + B1_Mur1 SINE Alu 6 142 -7 1 1590 603 0 0 0 chr4 131853439 131853506 -23776614 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1590 651 168 78 23 chr4 131853514 131853642 -23776478 + B1_Mus2 SINE Alu 1 135 -12 1 1590 570 190 13 9 chr4 131853683 131853793 -23776327 + B1_Mur2 SINE Alu 2 142 -7 1 1590 1261 41 0 0 chr4 131853822 131853969 -23776151 + B1_Mm SINE Alu 1 147 0 1 1590 1735 26 0 0 chr4 131854258 131854451 -23775669 + B2_Mm1t SINE B2 1 193 0 1 1590 419 284 34 17 chr4 131854581 131854699 -23775421 + PB1D9 SINE Alu 1 120 0 1 1590 231 132 148 19 chr4 131854699 131854753 -23775367 + ID2 SINE ID 5 65 -18 1 1590 418 299 8 8 chr4 131854754 131854872 -23775248 + ID_B1 SINE B4 103 220 -4 1 1590 434 159 85 64 chr4 131855207 131855301 -23774819 + B1_Mus2 SINE Alu 2 97 -50 1 1590 1109 37 52 0 chr4 131855302 131855438 -23774682 + B1_Mm SINE Alu 5 147 0 1 1590 1048 137 66 6 chr4 131855455 131855638 -23774482 + B2_Mm2 SINE B2 2 195 0 1 1590 266 284 49 0 chr4 131856045 131856126 -23773994 - PB1D10 SINE Alu 0 117 33 1 1590 684 191 29 29 chr4 131856210 131856350 -23773770 + ID_B1 SINE B4 82 221 -3 1 1590 1063 130 0 0 chr4 131856517 131856663 -23773457 - B1_Mus2 SINE Alu -1 146 1 1 1590 1634 21 16 0 chr4 131856674 131856862 -23773258 - B2_Mm1t SINE B2 -1 192 2 1 1590 392 290 178 0 chr4 131856873 131857042 -23773078 - B3 SINE B2 -17 199 1 1 1590 445 223 164 55 chr4 131857070 131857198 -23772922 - B1_Mur1 SINE Alu -2 147 6 1 1590 253 114 23 0 chr4 131857639 131857683 -23772437 - B3 SINE B2 -158 58 14 1 1590 411 267 29 38 chr4 131857687 131857792 -23772328 - ID_B1 SINE B4 -31 193 90 1 1590 239 309 147 11 chr4 131857880 131857975 -23772145 + PB1D10 SINE Alu 10 117 0 1 1591 23 0 0 0 chr4 131859140 131859163 -23770957 + GC_rich Low_complexity Low_complexity 1 23 0 1 1591 659 175 0 38 chr4 131859487 131859618 -23770502 + B1_Mm SINE Alu 21 146 -1 1 1591 1597 28 0 0 chr4 131859621 131859800 -23770320 + B2_Mm1a SINE B2 2 180 -13 1 1591 1054 37 30 0 chr4 131859800 131859935 -23770185 + B1_Mus1 SINE Alu 10 148 0 1 1591 225 0 0 0 chr4 131860263 131860288 -23769832 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1591 499 50 14 15 chr4 131860290 131860364 -23769756 - B1_Mur3 SINE Alu -13 136 41 1 1591 309 296 10 20 chr4 131860392 131860492 -23769628 - MIRb SINE MIR -90 178 80 1 1591 376 173 0 51 chr4 131860539 131860618 -23769502 - B1_Mur4 SINE Alu -1 149 75 1 1591 207 100 0 0 chr4 131860679 131860709 -23769411 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1 1591 1365 89 0 6 chr4 131860709 131860889 -23769231 - B2_Mm2 SINE B2 -13 182 4 1 1591 411 21 0 0 chr4 131860889 131860937 -23769183 + (TCC)n Simple_repeat Simple_repeat 3 50 0 1 1591 636 254 30 13 chr4 131860953 131861112 -23769008 - RSINE1 SINE B4 -4 288 3 1 1591 189 296 5 83 chr4 131861508 131861583 -23768537 + MIR SINE MIR 41 117 -151 1 1591 364 282 102 8 chr4 131861601 131861719 -23768401 - RSINE1 SINE B4 -34 131 3 1 1591 300 186 0 92 chr4 131861721 131861786 -23768334 - B1_Mus2 SINE Alu -88 59 1 1 1591 939 104 28 7 chr4 131861828 131861973 -23768147 - B1_Mus1 SINE Alu 0 148 1 1 1591 241 298 4 24 chr4 131861997 131862076 -23768044 - L2c LINE L2 -73 3353 3258 1 1591 502 284 113 21 chr4 131862083 131862277 -23767843 + B4 SINE B4 2 213 -79 1 1591 1650 31 0 0 chr4 131862287 131862479 -23767641 - B2_Mm1a SINE B2 0 193 2 1 1591 1273 98 40 0 chr4 131862511 131862684 -23767436 + B2_Mm2 SINE B2 2 181 -14 1 1591 431 76 164 36 chr4 131862726 131862836 -23767284 + B2_Mm2 SINE B2 47 185 -8 1 1591 515 176 147 0 chr4 131862842 131862944 -23767176 + PB1D9 SINE Alu 2 118 -2 1 1591 323 243 0 13 chr4 131862988 131863063 -23767057 - B3A SINE B2 -122 76 3 1 1591 24 32 0 0 chr4 131863070 131863101 -23767019 + AT_rich Low_complexity Low_complexity 1 31 0 1 1591 324 0 0 0 chr4 131863102 131863138 -23766982 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1591 867 84 176 0 chr4 131863138 131863269 -23766851 - B2_Mm2 SINE B2 -39 156 3 1 1591 243 147 0 0 chr4 131863390 131863424 -23766696 + Alu_5 SINE Alu 19 52 -123 1 1591 186 118 0 0 chr4 131863454 131863488 -23766632 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1591 1065 103 0 0 chr4 131863493 131863638 -23766482 + B1_Mm SINE Alu 3 147 0 1 1591 246 308 89 57 chr4 131863678 131863802 -23766318 + ORR1E LTR MaLR 179 306 -53 1 1591 180 125 0 0 chr4 131863805 131863837 -23766283 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1591 1485 77 0 15 chr4 131863840 131864037 -23766083 + B2_Mm2 SINE B2 2 195 0 1 1591 1131 75 0 0 chr4 131864052 131864199 -23765921 - B1_Mus2 SINE Alu 0 147 1 1 1591 198 0 0 0 chr4 131866947 131866969 -23763151 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1 1591 1233 45 26 0 chr4 131866969 131867124 -23762996 - B2_Mm1a SINE B2 -33 160 2 1 1591 207 0 0 0 chr4 131867406 131867429 -23762691 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1591 636 111 0 330 chr4 131867429 131867644 -23762476 - B1_Mus1 SINE Alu 0 148 5 1 1591 1074 89 33 66 chr4 131868060 131868241 -23761879 + B2_Mm2 SINE B2 2 176 -19 1 1591 1096 96 7 0 chr4 131868416 131868562 -23761558 - B1_Mus1 SINE Alu 0 148 2 1 1591 314 264 46 28 chr4 131868760 131868869 -23761251 - B1_Mm SINE Alu -34 113 3 1 1591 342 205 123 37 chr4 131868969 131869050 -23761070 + ID_B1 SINE B4 82 169 -55 1 1591 337 173 104 96 chr4 131869050 131869084 -23761036 + PB1D10 SINE Alu 1 116 -1 1 1591 305 280 28 34 chr4 131869256 131869387 -23760733 + ID4 SINE ID 8 134 -18 1 1591 839 153 28 22 chr4 131869393 131869582 -23760538 + B3 SINE B2 1 198 0 1 1591 330 266 26 44 chr4 131869703 131869817 -23760303 + PB1D9 SINE Alu 9 120 0 1 1591 289 282 157 10 chr4 131870360 131870500 -23759620 - MIR SINE MIR -95 181 18 1 1591 1119 102 0 0 chr4 131870580 131870727 -23759393 - B1_Mus2 SINE Alu 0 147 1 1 1591 1237 83 65 0 chr4 131870757 131870926 -23759194 + B2_Mm2 SINE B2 2 181 -14 1 1591 598 209 45 0 chr4 131870967 131871077 -23759043 - B2_Mm2 SINE B2 -80 115 1 1 1591 627 153 142 22 chr4 131871141 131871275 -23758845 + B1_Mur4 SINE Alu 1 150 0 1 1591 1340 13 6 0 chr4 131871300 131871456 -23758664 + B2_Mm1a SINE B2 2 158 -35 1 1591 347 56 19 0 chr4 131871456 131871510 -23758610 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 1 1591 1163 56 14 0 chr4 131871522 131871666 -23758454 + B1_Mm SINE Alu 2 147 0 1 1591 274 258 130 33 chr4 131873503 131873595 -23756525 - PB1D10 SINE Alu -15 102 2 1 1591 536 296 0 0 chr4 131873642 131873774 -23756346 - B3A SINE B2 -28 170 39 1 1591 208 197 0 78 chr4 131873819 131873862 -23756258 + A-rich Low_complexity Low_complexity 2 39 0 1 1591 1248 42 0 0 chr4 131873862 131874006 -23756114 + B1_Mus1 SINE Alu 5 148 0 1 1591 208 197 0 78 chr4 131874006 131874039 -23756081 + A-rich Low_complexity Low_complexity 40 72 0 1 1591 1248 34 0 20 chr4 131874115 131874265 -23755855 - B1_Mus2 SINE Alu 0 147 1 1 1591 306 362 91 52 chr4 131874368 131874578 -23755542 - MER20 DNA MER1_type -1 218 1 1 1591 399 192 14 0 chr4 131874611 131874684 -23755436 + B1_Mur3 SINE Alu 2 75 -74 1 1591 463 224 307 6 chr4 131874827 131874993 -23755127 - B3 SINE B2 0 216 1 1 1591 1195 42 21 0 chr4 131876181 131876325 -23753795 + B1_Mus1 SINE Alu 2 148 0 1 1591 323 232 37 0 chr4 131876361 131876443 -23753677 + PB1D9 SINE Alu 10 94 -26 1 1591 282 106 0 0 chr4 131876706 131876753 -23753367 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1591 321 86 0 183 chr4 131876753 131876824 -23753296 - B1_Mur3 SINE Alu -14 135 78 1 1591 375 296 111 22 chr4 131876829 131876964 -23753156 - B1F SINE Alu -1 148 2 1 1591 520 231 35 97 chr4 131877104 131877248 -23752872 - ID_B1 SINE B4 0 224 90 1 1591 365 326 65 33 chr4 131877324 131877508 -23752612 - MIR SINE MIR -61 201 12 1 1591 428 252 0 33 chr4 131877792 131877907 -23752213 - PB1D7 SINE Alu -1 119 12 1 1591 225 273 54 113 chr4 131877828 131878014 -23752106 - MT2B2 LTR ERVL -344 240 66 1 1591 399 172 9 115 chr4 131877980 131878093 -23752027 + B1_Mur3 SINE Alu 49 149 0 1 1591 183 42 0 0 chr4 131878135 131878159 -23751961 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1591 929 161 7 0 chr4 131878464 131878613 -23751507 + B1_Mur4 SINE Alu 1 150 0 1 1591 395 255 180 9 chr4 131878677 131878788 -23751332 + ID_B1 SINE B4 83 212 -12 1 1591 235 254 0 0 chr4 131878810 131878865 -23751255 - B2_Mm2 SINE B2 -139 56 2 1 1591 768 254 53 5 chr4 131878874 131879080 -23751040 - ID_B1 SINE B4 -7 217 2 1 1591 559 245 0 27 chr4 131879559 131879706 -23750414 - B1F2 SINE Alu -5 144 2 1 1591 288 258 233 0 chr4 131879926 131880046 -23750074 + B1_Mur1 SINE Alu 2 149 0 1 1591 871 136 21 14 chr4 131880058 131880200 -23749920 + B1_Mus1 SINE Alu 5 147 -1 1 1591 242 89 44 0 chr4 131880200 131880245 -23749875 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 1 1591 642 182 332 44 chr4 131880275 131880510 -23749610 + ORR1C2 LTR MaLR 1 327 -57 1 1591 1287 34 0 0 chr4 131880510 131880656 -23749464 + B1_Mus2 SINE Alu 2 147 0 1 1591 642 182 332 44 chr4 131880656 131880718 -23749402 + ORR1C2 LTR MaLR 328 384 0 1 1591 492 221 14 78 chr4 131880799 131880941 -23749179 + ID_B1 SINE B4 92 224 0 1 1591 392 259 9 18 chr4 131881264 131881374 -23748746 + MIR3 SINE MIR 89 197 -11 1 1591 490 116 14 0 chr4 131881501 131881570 -23748550 - ID4_ SINE ID -12 71 2 1 1591 563 297 61 10 chr4 131881588 131881785 -23748335 + MIRb SINE MIR 1 207 -61 1 1591 186 167 0 0 chr4 131882032 131882068 -23748052 + CT-rich Low_complexity Low_complexity 4 39 0 1 1591 820 203 7 7 chr4 131882072 131882216 -23747904 - B1_Mur2 SINE Alu -5 144 1 1 1591 879 143 20 26 chr4 131882536 131882687 -23747433 + B1_Mur4 SINE Alu 1 150 0 1 1591 255 239 80 82 chr4 131882826 131882933 -23747187 + PB1D7 SINE Alu 10 107 -13 1 1591 745 208 0 40 chr4 131882940 131883090 -23747030 - B1_Mur2 SINE Alu -3 146 3 1 1591 183 42 0 0 chr4 131883135 131883159 -23746961 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1591 1190 29 0 0 chr4 131883160 131883296 -23746824 - B1_Mm SINE Alu -11 136 1 1 1591 298 163 274 32 chr4 131883301 131883396 -23746724 - PB1D9 SINE Alu -1 119 2 1 1591 296 293 0 13 chr4 131883427 131883503 -23746617 - RSINE1 SINE B4 -87 78 4 1 1591 353 259 96 96 chr4 131883612 131883800 -23746320 + B2_Mm2 SINE B2 8 195 0 1 1591 1112 101 47 18 chr4 131883828 131883999 -23746121 + B2_Mm2 SINE B2 1 176 -19 1 1591 225 288 0 33 chr4 131884030 131884091 -23746029 - RLTR22_Mus LTR ERVK -1390 418 360 1 1591 568 156 153 23 chr4 131884658 131884789 -23745331 + B1_Mur2 SINE Alu 2 149 0 1 1591 490 182 146 0 chr4 131885013 131885123 -23744997 - B1F SINE Alu -19 130 5 1 1591 345 279 93 22 chr4 131886070 131886209 -23743911 - B1F1 SINE Alu 0 149 1 1 1591 240 250 19 19 chr4 131886524 131886577 -23743543 + RSINE1 SINE B4 2 54 -111 1 1591 623 232 14 21 chr4 131886622 131886763 -23743357 - B3 SINE B2 -74 142 3 1 1591 1180 157 313 55 chr4 131886763 131887174 -23742946 + RMER15 LTR ERVL 42 560 -15 1 1591 1141 82 0 0 chr4 131887252 131887398 -23742722 + B1_Mus2 SINE Alu 2 147 0 1 1591 251 273 0 172 chr4 131887418 131887511 -23742609 + B1_Mus2 SINE Alu 2 78 -69 1 1591 226 300 0 0 chr4 131887466 131887526 -23742594 + MT2B LTR ERVL 191 250 -351 1 1591 315 205 41 102 chr4 131887566 131887664 -23742456 + PB1D10 SINE Alu 18 109 -8 1 1591 774 187 36 0 chr4 131889242 131889381 -23740739 - B1_Mur1 SINE Alu 0 149 6 1 1591 812 200 7 0 chr4 131889583 131889728 -23740392 + B3 SINE B2 68 213 -3 1 1591 606 186 16 48 chr4 131889733 131889857 -23740263 + PB1D9 SINE Alu 1 120 0 1 1591 575 193 35 17 chr4 131891088 131891204 -23738916 - B1_Mur1 SINE Alu -25 124 7 1 1591 325 325 0 80 chr4 131891098 131891235 -23738885 - ID_B1 SINE B4 -35 189 64 1 1591 977 144 0 0 chr4 131892003 131892149 -23737971 - B1_Mus1 SINE Alu -2 146 1 1 1591 21 0 0 0 chr4 131892181 131892202 -23737918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1591 270 298 141 0 chr4 131892213 131892334 -23737786 + B1F2 SINE Alu 4 141 -8 1 1591 588 237 20 61 chr4 131892346 131892397 -23737723 + B1_Mur3 SINE Alu 2 48 -101 1 1591 1557 47 16 0 chr4 131892397 131892587 -23737533 + B2_Mm1a SINE B2 1 193 0 1 1591 588 237 20 61 chr4 131892587 131892683 -23737437 + B1_Mur3 SINE Alu 49 143 -6 1 1591 656 291 77 19 chr4 131892921 131893128 -23736992 + ID_B1 SINE B4 5 223 -1 1 1591 1269 41 0 0 chr4 131893155 131893301 -23736819 + B1_Mus1 SINE Alu 2 147 -1 1 1591 413 304 131 12 chr4 131894215 131894375 -23735745 + MIR SINE MIR 25 203 -59 1 1591 329 149 149 0 chr4 131894580 131894647 -23735473 + PB1D9 SINE Alu 41 117 -3 1 1591 291 327 45 51 chr4 131895297 131895474 -23734646 - MIRb SINE MIR -66 202 27 1 1591 300 276 69 69 chr4 131896066 131896210 -23733910 + ID_B1 SINE B4 3 146 -78 1 1591 231 200 10 242 chr4 131896415 131896514 -23733606 + MT2B LTR ERVL 166 241 -360 1 1591 597 151 144 48 chr4 131896425 131896550 -23733570 + B1_Mur1 SINE Alu 13 149 0 1 1591 282 296 82 0 chr4 131896639 131896737 -23733383 - PB1D10 SINE Alu -3 114 9 1 1591 254 227 15 0 chr4 131896774 131896840 -23733280 + ID4 SINE ID 1 67 -16 1 1591 613 160 171 31 chr4 131896871 131897000 -23733120 + B1_Mus2 SINE Alu 1 147 0 1 1591 330 214 43 21 chr4 131897028 131897144 -23732976 + B1_Mm SINE Alu 1 147 0 1 1591 1243 54 0 0 chr4 131897200 131897347 -23732773 + B1_Mus1 SINE Alu 2 148 0 1 1591 1314 101 11 0 chr4 131897865 131898044 -23732076 + B2_Mm1t SINE B2 1 181 -12 1 1591 265 174 286 0 chr4 131898044 131898142 -23731978 + B2_Mm2 SINE B2 65 190 -5 1 1591 381 193 35 35 chr4 131898278 131898409 -23731711 + B1_Mur4 SINE Alu 11 142 -8 1 1591 276 266 160 0 chr4 131898510 131898604 -23731516 + PB1D10 SINE Alu 1 109 -8 1 1591 398 286 45 8 chr4 131898700 131898834 -23731286 + B4A SINE B4 146 284 -8 1 1591 235 352 34 0 chr4 131898911 131898999 -23731121 - MIRm SINE MIR -112 164 74 1 1591 310 190 241 0 chr4 131899052 131899131 -23730989 + PB1D10 SINE Alu 9 106 -11 1 1591 1203 49 0 20 chr4 131899550 131899697 -23730423 + B1_Mus2 SINE Alu 4 147 0 1 1591 845 201 106 0 chr4 131899723 131899902 -23730218 + B3 SINE B2 6 203 -13 1 1591 330 26 0 0 chr4 131900159 131900198 -23729922 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1591 25 31 0 0 chr4 131901296 131901328 -23728792 + GC_rich Low_complexity Low_complexity 1 32 0 1 1591 779 270 24 14 chr4 131902010 131902217 -23727903 - B3 SINE B2 -7 209 1 1 1591 296 194 14 29 chr4 131902429 131902498 -23727622 + B1F1 SINE Alu 2 69 -80 1 1591 969 90 111 23 chr4 131902737 131902908 -23727212 + B2_Mm2 SINE B2 2 187 -8 1 1591 357 24 0 0 chr4 131902911 131902953 -23727167 + (GGA)n Simple_repeat Simple_repeat 3 44 0 1 1591 1142 96 60 0 chr4 131902953 131903120 -23727000 + B2_Mm1t SINE B2 3 179 -14 1 1591 1204 41 0 46 chr4 131903120 131903273 -23726847 + B1_Mm SINE Alu 2 147 0 1 1591 411 83 0 0 chr4 131903273 131903333 -23726787 + (A)n Simple_repeat Simple_repeat 1 60 0 1 1591 234 311 0 51 chr4 131903541 131903619 -23726501 - B4 SINE B4 -133 159 86 1 1591 570 262 0 0 chr4 131903713 131903835 -23726285 - RSINE1 SINE B4 -33 132 11 1 1591 1191 68 0 0 chr4 131904201 131904348 -23725772 - B1_Mus2 SINE Alu 0 147 1 1 1591 400 229 37 37 chr4 131904357 131904466 -23725654 - B2_Mm2 SINE B2 -10 185 77 1 1591 1175 51 0 0 chr4 131904622 131904759 -23725361 + B1_Mm SINE Alu 2 138 -9 1 1591 207 0 0 0 chr4 131904759 131904782 -23725338 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1591 1222 86 12 0 chr4 131904793 131904955 -23725165 + B2_Mm2 SINE B2 2 165 -30 1 1591 216 233 51 76 chr4 131905123 131905202 -23724918 + B2_Mm2 SINE B2 67 143 -52 1 1591 351 0 0 0 chr4 131905356 131905395 -23724725 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1591 284 160 364 10 chr4 131905397 131905496 -23724624 - B2_Mm2 SINE B2 -15 180 47 1 1591 1067 106 124 0 chr4 131905537 131905698 -23724422 - B2_Mm2 SINE B2 -14 181 1 1 1591 489 241 158 53 chr4 131905704 131905875 -23724245 - B3A SINE B2 -1 197 9 1 1591 628 220 147 42 chr4 131905931 131906121 -23723999 + B3 SINE B2 1 210 -6 1 1591 567 257 28 0 chr4 131906143 131906287 -23723833 + B1_Mus1 SINE Alu 1 148 0 1 1591 221 304 12 81 chr4 131906349 131906435 -23723685 - B2_Mm2 SINE B2 -106 89 10 1 1591 226 281 0 86 chr4 131906374 131906444 -23723676 - ID4 SINE ID -14 69 6 1 1591 509 133 224 0 chr4 131906592 131906690 -23723430 + B1_Mus1 SINE Alu 3 122 -26 1 1591 244 196 157 0 chr4 131906893 131906944 -23723176 - ID4 SINE ID -23 60 2 1 1591 965 140 93 6 chr4 131907203 131907375 -23722745 + B2_Mm1t SINE B2 2 188 -5 1 1591 1378 104 10 5 chr4 131908239 131908442 -23721678 - U17 snRNA snRNA -3 204 1 1 1591 1386 103 10 5 chr4 131908691 131908895 -23721225 - U17 snRNA snRNA -2 205 1 1 1591 1128 75 7 0 chr4 131909944 131910090 -23720030 + B1_Mus2 SINE Alu 1 147 0 1 1591 1126 56 21 0 chr4 131910209 131910353 -23719767 - B1_Mm SINE Alu 0 147 1 1 1591 1190 75 0 0 chr4 131910816 131910963 -23719157 + B1_Mus2 SINE Alu 1 147 0 1 1591 192 40 0 0 chr4 131910963 131910988 -23719132 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1 1591 189 0 0 0 chr4 131910991 131911012 -23719108 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1591 224 159 0 47 chr4 131911030 131911077 -23719043 + A-rich Low_complexity Low_complexity 1 46 0 1 1591 1175 75 0 0 chr4 131911077 131911224 -23718896 + B1_Mm SINE Alu 1 147 0 1 1591 224 159 0 47 chr4 131911224 131911262 -23718858 + A-rich Low_complexity Low_complexity 47 82 0 1 1591 478 248 223 25 chr4 131911426 131911583 -23718537 - ID_B1 SINE B4 -35 189 2 1 1591 289 233 123 0 chr4 131911742 131911815 -23718305 + ID4_ SINE ID 1 82 -1 1 1591 417 160 350 0 chr4 131912191 131912291 -23717829 + ID_B1 SINE B4 85 219 -5 1 1591 214 325 112 17 chr4 131912291 131912307 -23717813 + FAM SINE Alu 139 265 -46 1 1591 211 157 0 38 chr4 131912360 131912413 -23717707 + (CGGAG)n Simple_repeat Simple_repeat 1 51 0 1 1591 328 304 17 25 chr4 131912852 131912970 -23717150 + B1F SINE Alu 1 117 0 1 1591 757 169 115 0 chr4 131913495 131913625 -23716495 + B1F SINE Alu 5 149 0 1 1591 439 274 1 9 chr4 131914432 131914537 -23715583 + PB1D7 SINE Alu 29 127 -21 1 1591 213 94 0 0 chr4 131914658 131914690 -23715430 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1591 314 215 46 0 chr4 131915065 131915130 -23714990 + ID_B1 SINE B4 87 154 -70 1 1591 250 260 133 9 chr4 131915131 131915236 -23714884 + PB1D9 SINE Alu 1 118 -2 1 1591 356 312 83 0 chr4 131915251 131915360 -23714760 + B1F SINE Alu 5 122 -27 1 1591 1034 242 14 9 chr4 131915430 131915643 -23714477 - ID_B1 SINE B4 -9 215 2 1 1591 262 352 94 90 chr4 131915768 131915792 -23714328 - B4A SINE B4 -56 236 217 1 1591 1211 61 0 0 chr4 131915792 131915939 -23714181 - B1_Mus1 SINE Alu 0 148 2 1 1591 262 352 94 90 chr4 131915939 131916148 -23713972 - B4A SINE B4 -76 216 2 1 1591 489 321 37 0 chr4 131916161 131916295 -23713825 - ID_B1 SINE B4 -8 216 78 1 1591 1472 53 26 10 chr4 131916713 131916905 -23713215 + B2_Mm2 SINE B2 1 195 0 1 1591 910 190 135 5 chr4 131917023 131917208 -23712912 + B3 SINE B2 1 209 -7 1 1591 1415 66 11 0 chr4 131917229 131917410 -23712710 + B2_Mm1t SINE B2 1 183 -10 1 1591 545 288 19 56 chr4 131917888 131918050 -23712070 + RSINE1 SINE B4 4 159 -6 1 1591 847 127 91 131 chr4 131918325 131918482 -23711638 - B2_Mm2 SINE B2 -4 191 41 1 1591 1701 21 0 0 chr4 131918482 131918674 -23711446 - B2_Mm1a SINE B2 0 193 2 1 1591 847 127 91 131 chr4 131918674 131918715 -23711405 - B2_Mm2 SINE B2 -155 40 1 1 1591 26 40 0 20 chr4 131918853 131918884 -23711236 + AT_rich Low_complexity Low_complexity 1 31 0 1 1591 1432 91 0 0 chr4 131918884 131919070 -23711050 - B2_Mm2 SINE B2 -9 186 1 1 1591 26 40 0 20 chr4 131919070 131919089 -23711031 + AT_rich Low_complexity Low_complexity 1 19 0 1 1591 671 89 266 9 chr4 131919094 131919207 -23710913 - B1_Mus1 SINE Alu -6 142 1 1 1591 303 104 0 0 chr4 131919377 131919425 -23710695 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1591 865 166 21 0 chr4 131919845 131919990 -23710130 + B1_Mur4 SINE Alu 3 150 0 1 1591 234 0 0 0 chr4 131919995 131920021 -23710099 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1591 1628 47 0 0 chr4 131920072 131920263 -23709857 + B2_Mm1a SINE B2 2 192 -1 1 1591 315 176 0 0 chr4 131921853 131921904 -23708216 + B3 SINE B2 27 77 -139 1 1591 726 247 7 0 chr4 131922047 131922193 -23707927 + B1_Mur2 SINE Alu 1 147 -2 1 1591 253 158 0 0 chr4 131922198 131922236 -23707884 - MurSatRep1 Unknown Unknown -1863 274 237 1 1591 449 229 150 6 chr4 131922236 131922403 -23707717 + B4A SINE B4 1 191 -101 1 1591 378 0 0 0 chr4 131922573 131922615 -23707505 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1591 1421 40 46 6 chr4 131922721 131922895 -23707225 + B2_Mm2 SINE B2 2 182 -13 1 1591 186 43 0 0 chr4 131922896 131922919 -23707201 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1591 691 200 83 0 chr4 131922933 131923053 -23707067 + B3 SINE B2 1 130 -86 1 1591 245 351 83 38 chr4 131923053 131923090 -23707030 + RSINE1 SINE B4 2 165 0 1 1591 258 32 0 0 chr4 131923096 131923127 -23706993 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1591 976 153 0 0 chr4 131923157 131923294 -23706826 + B1_Mur4 SINE Alu 1 137 -13 1 1591 1209 55 0 0 chr4 131924266 131924411 -23705709 - B1_Mus2 SINE Alu -1 146 2 1 1591 22 0 0 0 chr4 131924426 131924448 -23705672 + AT_rich Low_complexity Low_complexity 1 22 0 1 1591 330 297 22 0 chr4 131924457 131924548 -23705572 - PB1 SINE Alu -4 123 31 1 1591 705 274 26 16 chr4 131924878 131925067 -23705053 - B3A SINE B2 -3 195 5 1 1591 335 326 46 78 chr4 131925257 131925410 -23704710 + B4 SINE B4 76 223 -69 1 1591 692 216 37 0 chr4 131925277 131925411 -23704709 + B1_Mur1 SINE Alu 10 148 -1 1 1591 747 149 0 0 chr4 131927324 131927438 -23702682 + B1_Mur4 SINE Alu 1 114 -36 1 1591 839 47 8 32 chr4 131927475 131927613 -23702507 - B1_Mm SINE Alu 0 149 17 1 1591 1564 22 6 11 chr4 131927629 131927811 -23702309 + B2_Mm1a SINE B2 2 182 -11 1 1591 243 0 0 0 chr4 131927811 131927838 -23702282 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1591 570 208 43 65 chr4 131927843 131927982 -23702138 - B3 SINE B2 -3 213 78 1 1591 277 282 137 58 chr4 131927989 131928103 -23702017 + B1_Mur1 SINE Alu 16 138 -11 1 1591 309 275 38 0 chr4 131928173 131928253 -23701867 + RSINE1 SINE B4 4 86 -79 1 1591 1393 69 17 0 chr4 131928592 131928766 -23701354 + B2_Mm2 SINE B2 1 177 -18 1 1591 1303 80 17 0 chr4 131928767 131928942 -23701178 + B2_Mm1t SINE B2 2 179 -14 1 1591 466 75 358 18 chr4 131929014 131929123 -23700997 + B2_Mm2 SINE B2 49 194 -1 1 1591 238 182 106 0 chr4 131929299 131929365 -23700755 + B1F SINE Alu 77 149 0 1 1591 349 158 24 84 chr4 131929496 131929508 -23700612 - B1F SINE Alu -6 143 136 1 1591 330 26 0 0 chr4 131929508 131929547 -23700573 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1591 349 165 31 79 chr4 131929547 131929635 -23700485 - B1F SINE Alu -14 135 43 1 1591 489 255 90 16 chr4 131929627 131929805 -23700315 - B4 SINE B4 -61 231 46 1 1591 341 264 105 42 chr4 131929827 131929922 -23700198 - B3A SINE B2 0 198 98 1 1591 245 319 6 94 chr4 131930018 131930198 -23699922 - Charlie18a DNA MER1_type -96 246 83 1 1591 454 287 41 0 chr4 131930290 131930412 -23699708 - ID_B1 SINE B4 0 224 98 1 1591 328 294 68 75 chr4 131930412 131930437 -23699683 - B1_Mus2 SINE Alu -1 146 1 1 1591 309 351 50 62 chr4 131930490 131930669 -23699451 + MER5A DNA MER1_type 11 187 -2 1 1591 235 329 0 27 chr4 131931206 131931281 -23698839 - ID_B1 SINE B4 -123 101 29 1 1591 228 253 22 122 chr4 131931226 131931316 -23698804 - ID4 SINE ID -1 82 2 1 1591 498 17 0 0 chr4 131931408 131931467 -23698653 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1 1591 450 239 92 0 chr4 131931500 131931609 -23698511 - B1F2 SINE Alu -7 142 24 1 1591 439 252 96 0 chr4 131932007 131932122 -23697998 - ID_B1 SINE B4 -20 204 79 1 1591 30 45 0 0 chr4 131932198 131932242 -23697878 + AT_rich Low_complexity Low_complexity 1 44 0 1 1591 1260 89 0 43 chr4 131932246 131932434 -23697686 - B2_Mm2 SINE B2 -15 180 1 1 1591 209 217 0 21 chr4 131932546 131932593 -23697527 + CT-rich Low_complexity Low_complexity 3 48 0 1 1591 249 57 0 0 chr4 131932594 131932629 -23697491 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 1 1591 702 192 39 0 chr4 131932636 131932766 -23697354 - B1_Mur3 SINE Alu -14 135 1 1 1591 1243 48 0 0 chr4 131932824 131932971 -23697149 + B1_Mus2 SINE Alu 1 147 0 1 1591 258 116 0 0 chr4 131932972 131933015 -23697105 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1591 189 107 0 0 chr4 131933212 131933240 -23696880 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 1591 408 250 218 19 chr4 131933659 131933819 -23696301 + B4A SINE B4 28 219 -73 1 1591 1041 122 7 0 chr4 131933829 131933976 -23696144 + B1_Mus1 SINE Alu 1 148 0 1 1591 26 50 0 0 chr4 131934005 131934045 -23696075 + AT_rich Low_complexity Low_complexity 1 40 0 1 1591 261 0 0 0 chr4 131934510 131934539 -23695581 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1591 872 194 118 75 chr4 131934539 131934818 -23695302 + Lx4A LINE L1 6768 7058 0 1 1591 742 259 19 58 chr4 131935300 131935505 -23694615 + B3A SINE B2 1 197 -1 1 1591 1316 191 0 5 chr4 131936103 131936319 -23693801 + B3 SINE B2 1 215 -1 1 1591 2016 25 4 0 chr4 131936320 131936561 -23693559 + MTA_Mm LTR MaLR 1 242 -154 1 1591 570 114 0 0 chr4 131936558 131936637 -23693483 + RLTR27 LTR ERVK 128 206 -103 1 1591 1293 82 0 32 chr4 131936660 131936848 -23693272 + B2_Mm2 SINE B2 14 195 0 1 1591 289 267 75 32 chr4 131937216 131937309 -23692811 - PB1D10 SINE Alu -20 97 1 1 1591 382 297 102 0 chr4 131937352 131937480 -23692640 - B1F1 SINE Alu -8 141 1 1 1591 441 276 33 124 chr4 131937508 131937640 -23692480 - B4 SINE B4 -72 220 102 1 1591 2883 54 81 5 chr4 131937640 131938012 -23692108 + MTB LTR MaLR 1 400 0 1 1591 441 276 33 124 chr4 131938012 131938032 -23692088 - B4 SINE B4 -191 101 82 1 1591 274 250 35 116 chr4 131938075 131938161 -23691959 - RSINE1 SINE B4 -3 162 84 1 1591 650 263 106 6 chr4 131938238 131938418 -23691702 - B3 SINE B2 -5 211 14 1 1591 320 219 0 12 chr4 131938439 131938522 -23691598 + CT-rich Low_complexity Low_complexity 1 82 0 1 1591 1123 92 0 0 chr4 131938523 131938665 -23691455 - B1_Mus1 SINE Alu -5 143 2 1 1591 544 231 89 7 chr4 131939433 131939568 -23690552 + B1F2 SINE Alu 1 146 -3 1 1591 215 256 139 0 chr4 131939586 131939682 -23690438 + B1_Mur1 SINE Alu 39 149 0 1 1591 472 275 32 90 chr4 131939691 131939780 -23690340 + ID SINE ID 1 78 -146 1 1591 571 211 10 0 chr4 131939780 131939884 -23690236 + B1_Mur4 SINE Alu 1 105 -45 1 1591 256 315 8 98 chr4 131939783 131939906 -23690214 + MT2B LTR ERVL 168 279 -322 1 1591 1353 95 16 5 chr4 131940053 131940244 -23689876 - B2_Mm2 SINE B2 0 195 3 1 1591 577 102 0 36 chr4 131940251 131940358 -23689762 + (TTTA)n Simple_repeat Simple_repeat 1 103 0 1 1591 1265 41 0 0 chr4 131940358 131940504 -23689616 - B1_Mm SINE Alu -1 146 1 1 1591 382 121 43 57 chr4 131940513 131940583 -23689537 - B1F1 SINE Alu -7 142 74 1 1591 276 177 70 81 chr4 131940583 131940595 -23689525 - ID_B1 SINE B4 -3 217 137 1 1591 342 276 76 25 chr4 131940685 131940804 -23689316 + PB1 SINE Alu 1 125 -2 1 1591 481 244 42 34 chr4 131940810 131940929 -23689191 + RSINE1 SINE B4 1 120 -45 1 1591 1141 92 98 0 chr4 131940988 131941152 -23688968 + B2_Mm2 SINE B2 2 181 -14 1 1591 416 73 0 0 chr4 131941184 131941239 -23688881 + B2_Mm2 SINE B2 47 101 -94 1 1591 234 0 0 0 chr4 131941257 131941283 -23688837 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1591 260 270 0 31 chr4 131941300 131941365 -23688755 + ID4 SINE ID 3 65 -18 1 1591 1224 48 0 0 chr4 131941461 131941607 -23688513 + B1_Mm SINE Alu 2 147 0 1 1591 508 309 106 6 chr4 131941644 131941823 -23688297 + ID_B1 SINE B4 15 211 -13 1 1591 489 255 9 19 chr4 131941886 131941994 -23688126 - ID_B1 SINE B4 -32 192 86 1 1591 390 285 89 107 chr4 131942036 131942327 -23687793 - B4 SINE B4 -5 287 2 1 1591 1367 95 11 0 chr4 131942357 131942546 -23687574 + B2_Mm1t SINE B2 2 192 -1 1 1591 252 59 0 0 chr4 131942549 131942583 -23687537 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1591 601 298 22 16 chr4 131942584 131942768 -23687352 - ID_B1 SINE B4 -12 212 28 1 1591 21 0 0 0 chr4 131943912 131943933 -23686187 + AT_rich Low_complexity Low_complexity 1 21 0 1 1591 442 257 73 0 chr4 131944106 131944215 -23685905 - PB1D10 SINE Alu 0 117 1 1 1591 476 207 26 51 chr4 131944469 131944586 -23685534 - B1_Mur3 SINE Alu 0 149 36 1 1591 1199 29 0 0 chr4 131944622 131944761 -23685359 + B1_Mm SINE Alu 1 139 -8 1 1591 204 135 0 0 chr4 131944915 131944952 -23685168 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1591 379 136 0 0 chr4 131945024 131945083 -23685037 - B1_Mus2 SINE Alu -55 92 34 1 1591 498 281 15 15 chr4 131945246 131945383 -23684737 - ID_B1 SINE B4 -9 215 79 1 1591 539 237 9 0 chr4 131945547 131945661 -23684459 + PB1D10 SINE Alu 1 115 -2 1 1591 1062 113 14 115 chr4 131945854 131946063 -23684057 + B2_Mm2 SINE B2 1 188 -7 1 1591 699 241 82 0 chr4 131946070 131946228 -23683892 + B3 SINE B2 39 209 -7 1 1591 21 0 0 0 chr4 131946231 131946252 -23683868 + AT_rich Low_complexity Low_complexity 1 21 0 1 1591 241 312 53 44 chr4 131946268 131946382 -23683738 + PB1D10 SINE Alu 2 116 -1 1 1591 1021 136 0 0 chr4 131946634 131946781 -23683339 + B1_Mus2 SINE Alu 1 147 0 1 1591 1031 221 5 20 chr4 131946801 131947004 -23683116 - B3 SINE B2 -15 201 2 1 1591 422 263 8 26 chr4 131947021 131947138 -23682982 - B3A SINE B2 -14 184 70 1 1591 275 225 24 59 chr4 131947450 131947470 -23682650 - L1MEg LINE L1 -4306 1778 1760 1 1591 2349 54 32 76 chr4 131947470 131947738 -23682382 + ORR1A2 LTR MaLR 1 279 -48 1 1591 1289 20 0 0 chr4 131947738 131947884 -23682236 + B1_Mm SINE Alu 2 147 0 1 1591 2349 54 32 76 chr4 131947884 131947957 -23682163 + ORR1A2 LTR MaLR 280 327 0 1 1591 275 225 24 59 chr4 131947957 131948021 -23682099 - L1MEg LINE L1 -4325 1759 1697 1 1591 334 234 42 11 chr4 131948294 131948389 -23681731 - BC1_Mm scRNA scRNA -53 99 2 1 1591 1312 77 60 11 chr4 131948428 131948613 -23681507 + B2_Mm2 SINE B2 2 195 0 1 1591 822 224 22 0 chr4 131948613 131948796 -23681324 + B3 SINE B2 30 216 0 1 1591 34 79 0 0 chr4 131948981 131949057 -23681063 + AT_rich Low_complexity Low_complexity 1 76 0 1 1591 343 251 295 0 chr4 131949364 131949489 -23680631 + RSINE1 SINE B4 2 163 -2 1 1591 225 94 0 0 chr4 131949804 131949836 -23680284 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1591 259 241 118 59 chr4 131949904 131950023 -23680097 + B1_Mus1 SINE Alu 6 131 -17 1 1591 255 246 15 0 chr4 131950159 131950224 -23679896 - ID4 SINE ID -16 67 2 1 1591 211 272 211 10 chr4 131950232 131950336 -23679784 - PB1 SINE Alu -1 126 2 1 1591 585 293 7 7 chr4 131950563 131950714 -23679406 - RSINE1 SINE B4 -1 164 14 1 1591 319 269 4 20 chr4 131950734 131950835 -23679285 - PB1D7 SINE Alu 0 120 20 1 1591 264 310 21 65 chr4 131951178 131951271 -23678849 + B4A SINE B4 85 173 -119 1 1591 1433 58 31 16 chr4 131951307 131951499 -23678621 + B2_Mm2 SINE B2 1 195 0 1 1591 429 285 84 19 chr4 131951508 131951662 -23678458 + RSINE1 SINE B4 2 165 0 1 1591 504 211 39 39 chr4 131951750 131951873 -23678247 + B1_Mur1 SINE Alu 11 134 -15 1 1591 573 204 30 0 chr4 131951873 131952005 -23678115 - B1_Mur4 SINE Alu -10 140 5 1 1591 25 0 0 0 chr4 131952252 131952277 -23677843 + AT_rich Low_complexity Low_complexity 1 25 0 1 1591 245 273 55 48 chr4 131952278 131952289 -23677831 - B1F1 SINE Alu -1 148 7 1 1591 254 289 15 69 chr4 131952289 131952419 -23677701 - ID_B1 SINE B4 -12 212 90 1 1591 787 48 0 0 chr4 131952794 131952899 -23677221 - B1_Mm SINE Alu 0 147 43 1 1591 789 171 23 0 chr4 131952907 131953036 -23677084 - B1_Mur1 SINE Alu -6 143 12 1 1591 216 0 0 0 chr4 131953443 131953467 -23676653 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1591 351 0 0 0 chr4 131954471 131954510 -23675610 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1591 246 62 0 0 chr4 131954517 131954549 -23675571 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1591 612 219 119 0 chr4 131954565 131954725 -23675395 + B3 SINE B2 32 210 -6 1 1591 29 28 0 0 chr4 131954727 131954763 -23675357 + AT_rich Low_complexity Low_complexity 1 36 0 1 1591 659 226 90 61 chr4 131954823 131955035 -23675085 - ID_B1 SINE B4 -6 218 1 1 1591 489 248 135 0 chr4 131955068 131955209 -23674911 - RSINE1 SINE B4 -4 161 2 1 1591 1431 75 32 0 chr4 131955533 131955719 -23674401 - B2_Mm1t SINE B2 0 193 2 1 1591 1219 98 46 0 chr4 131955951 131956124 -23673996 + B2_Mm2 SINE B2 1 181 -14 1 1591 1080 103 0 0 chr4 131956132 131956278 -23673842 - B1_Mus2 SINE Alu 0 147 2 1 1591 802 149 270 60 chr4 131956641 131956826 -23673294 - URR1B DNA MER1_type 0 225 2 1 1591 336 245 21 31 chr4 131957121 131957218 -23672902 + PB1D10 SINE Alu 15 110 -7 1 1591 914 174 0 0 chr4 131957367 131957516 -23672604 + B1_Mur2 SINE Alu 1 149 0 1 1591 378 300 0 10 chr4 131957765 131957866 -23672254 + B4A SINE B4 137 236 -56 1 1591 751 162 27 34 chr4 131957868 131958015 -23672105 + B1_Mus1 SINE Alu 1 146 -2 1 1591 712 144 7 14 chr4 131958536 131958677 -23671443 + Lx LINE L1 6515 6654 0 1 1591 1190 75 0 0 chr4 131958681 131958828 -23671292 + B1_Mus1 SINE Alu 2 148 0 1 1591 545 164 18 0 chr4 131958828 131958938 -23671182 + GA-rich Low_complexity Low_complexity 3 114 0 1 1591 1401 62 40 0 chr4 131959627 131959804 -23670316 + B2_Mm2 SINE B2 3 186 -9 1 1591 410 264 9 9 chr4 131960152 131960263 -23669857 + PB1D7 SINE Alu 3 113 -7 1 1591 660 141 124 0 chr4 131960281 131960402 -23669718 + B1_Mur4 SINE Alu 8 143 -7 1 1591 207 0 0 0 chr4 131960405 131960428 -23669692 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1591 419 208 40 0 chr4 131960543 131960644 -23669476 + MTEb LTR MaLR 1 105 -274 1 1591 371 343 7 35 chr4 131960646 131960788 -23669332 + RSINE1 SINE B4 25 162 -3 1 1591 462 253 59 20 chr4 131960885 131961038 -23669082 + RSINE1 SINE B4 3 161 -4 1 1591 866 171 0 7 chr4 131961050 131961191 -23668929 + B1_Mus1 SINE Alu 1 140 -8 1 1591 191 36 36 0 chr4 131961191 131961219 -23668901 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1591 844 138 0 0 chr4 131961254 131961384 -23668736 - B3 SINE B2 -86 130 1 1 1591 444 270 54 0 chr4 131961411 131961522 -23668598 + B1_Mur2 SINE Alu 2 118 -31 1 1591 1557 48 37 0 chr4 131961782 131961970 -23668150 - B2_Mm2 SINE B2 0 195 1 1 1591 301 276 147 32 chr4 131962426 131962583 -23667537 - ID_B1 SINE B4 -49 175 1 1 1591 218 210 22 94 chr4 131963138 131963224 -23666896 + B1F SINE Alu 43 123 -4 1 1591 400 245 10 10 chr4 131963319 131963422 -23666698 + RSINE1 SINE B4 2 104 -61 1 1591 971 261 89 11 chr4 131963657 131963928 -23666192 - B4A SINE B4 0 292 1 1 1591 1578 56 0 5 chr4 131963963 131964159 -23665961 + B2_Mm2 SINE B2 1 195 0 1 1591 861 82 0 0 chr4 131964199 131964321 -23665799 + B1_Mur4 SINE Alu 24 145 -5 1 1591 344 254 43 9 chr4 131964613 131964728 -23665392 - B4 SINE B4 -92 200 82 1 1591 1276 70 0 0 chr4 131964725 131964897 -23665223 - B2_Mm2 SINE B2 -23 172 1 1 1591 219 167 0 0 chr4 131964959 131965001 -23665119 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1 1591 234 62 0 0 chr4 131965002 131965034 -23665086 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1 1591 499 286 8 0 chr4 131965047 131965180 -23664940 - B1F SINE Alu -6 143 10 1 1591 536 168 0 248 chr4 131965483 131965705 -23664415 - URR1A DNA MER1_type -1 225 59 1 1591 744 168 73 0 chr4 131965798 131965935 -23664185 + B1_Mur2 SINE Alu 1 147 -2 1 1591 1133 42 21 0 chr4 131966197 131966341 -23663779 + B1_Mm SINE Alu 1 147 0 1 1591 781 215 43 0 chr4 131966379 131966542 -23663578 + B3 SINE B2 24 193 -23 1 1591 23 0 0 0 chr4 131966544 131966567 -23663553 + AT_rich Low_complexity Low_complexity 1 23 0 1 1591 756 222 0 0 chr4 131966575 131966710 -23663410 + B1_Mus1 SINE Alu 1 135 -13 1 1591 477 259 202 27 chr4 131966716 131966899 -23663221 + ID_B1 SINE B4 1 215 -9 1 1591 284 179 0 56 chr4 131966942 131967013 -23663107 + B1_Mur4 SINE Alu 76 142 -8 1 1591 464 259 153 15 chr4 131967023 131967160 -23662960 + RSINE1 SINE B4 2 157 -8 1 1591 854 189 103 20 chr4 131967348 131967543 -23662577 - B3 SINE B2 -5 211 1 1 1591 186 133 0 0 chr4 131967669 131967699 -23662421 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 1 1591 237 33 0 0 chr4 131968033 131968063 -23662057 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1591 675 148 17 9 chr4 131968391 131968507 -23661613 + B1_Mur1 SINE Alu 33 149 0 1 1591 519 140 215 0 chr4 131968512 131968619 -23661501 + B3 SINE B2 1 130 -86 1 1591 485 139 79 0 chr4 131968714 131968815 -23661305 + B1_Mur2 SINE Alu 41 149 0 1 1591 1184 55 0 7 chr4 131969136 131969283 -23660837 + B1_Mus2 SINE Alu 2 147 0 1 1591 345 109 0 0 chr4 131969284 131969348 -23660772 + (A)n Simple_repeat Simple_repeat 1 64 0 1 1591 315 0 0 0 chr4 131969542 131969577 -23660543 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1591 632 180 14 79 chr4 131969726 131969865 -23660255 + B1_Mur4 SINE Alu 13 142 -8 1 1591 2007 59 12 0 chr4 131969930 131970184 -23659936 + L1Md_F2 LINE L1 6325 6581 -1 1 1591 1319 69 31 26 chr4 131970295 131970488 -23659632 - B2_Mm2 SINE B2 0 195 2 1 1591 274 292 75 0 chr4 131970493 131970599 -23659521 - PB1D9 SINE Alu -6 114 1 1 1591 387 295 35 0 chr4 131971211 131971465 -23658655 + (CTATG)n Simple_repeat Simple_repeat 1 262 0 1 1591 294 312 41 0 chr4 131971484 131971654 -23658466 + (CTGTG)n Simple_repeat Simple_repeat 4 180 0 1 1591 236 243 67 13 chr4 131971744 131971819 -23658301 + MLT1A0 LTR MaLR 37 115 -250 1 1591 744 269 120 0 chr4 131971951 131972185 -23657935 + L1M4 LINE L1 789 1050 -5492 1 1591 270 182 3 1 chr4 131972339 131972391 -23657729 + PB1D9 SINE Alu 22 74 -76 1 1591 1248 104 35 0 chr4 131972391 131972564 -23657556 + B2_Mm1t SINE B2 1 179 -14 1 1591 249 237 80 30 chr4 131972564 131972611 -23657509 + B1_Mur4 SINE Alu 75 126 -24 1 1591 330 89 319 18 chr4 131972605 131972718 -23657402 + B2_Mm2 SINE B2 47 193 -2 1 1591 469 225 67 0 chr4 131972918 131973038 -23657082 - B1F SINE Alu -19 130 3 1 1591 725 199 0 35 chr4 131973439 131973580 -23656540 - B1_Mus1 SINE Alu -5 143 8 1 1591 287 250 213 55 chr4 131973599 131973726 -23656394 + B1F1 SINE Alu 1 147 -2 1 1591 41 0 0 0 chr4 131973748 131973789 -23656331 + AT_rich Low_complexity Low_complexity 1 41 0 1 1591 987 123 7 7 chr4 131973793 131973940 -23656180 - B1_Mus1 SINE Alu -1 147 1 1 1591 638 285 55 5 chr4 131973945 131973986 -23656134 - B3 SINE B2 -5 211 169 1 1591 189 0 0 0 chr4 131973986 131974007 -23656113 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1 1591 638 285 55 5 chr4 131974007 131974166 -23655954 - B3 SINE B2 -48 168 2 1 1591 231 103 0 0 chr4 131974180 131974219 -23655901 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 1591 331 282 118 30 chr4 131974225 131974360 -23655760 - RSINE1 SINE B4 -17 148 2 1 1591 1204 34 7 0 chr4 131974386 131974532 -23655588 - B1_Mm SINE Alu 0 147 1 1 1591 1381 79 11 0 chr4 131974553 131974742 -23655378 + B2_Mm1t SINE B2 2 192 -1 1 1591 237 83 0 0 chr4 131974862 131974898 -23655222 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 1591 1152 57 0 0 chr4 131974898 131975039 -23655081 - B1_Mus2 SINE Alu -5 142 2 1 1591 433 188 0 24 chr4 131975733 131975815 -23654305 - B1_Mur1 SINE Alu 0 149 70 1 1591 281 330 50 52 chr4 131976085 131976284 -23653836 + MIRb SINE MIR 27 227 -41 1 1591 389 272 43 9 chr4 131976598 131976713 -23653407 + RSINE1 SINE B4 3 121 -44 1 1591 392 285 54 0 chr4 131976766 131976896 -23653224 - B1F1 SINE Alu -1 148 12 1 1591 24 32 0 0 chr4 131977534 131977565 -23652555 + GC_rich Low_complexity Low_complexity 1 31 0 1 1591 1218 68 0 0 chr4 131979081 131979228 -23650892 + B1_Mus1 SINE Alu 2 148 0 1 1591 544 236 41 48 chr4 131979262 131979409 -23650711 + B1F2 SINE Alu 3 148 -1 1 1591 198 240 0 0 chr4 131979455 131979505 -23650615 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1591 688 183 112 68 chr4 131979506 131979711 -23650409 + B3A SINE B2 3 216 0 1 1591 904 92 255 0 chr4 131979732 131979885 -23650235 + B2_Mm2 SINE B2 3 194 -1 1 1591 243 268 24 31 chr4 131979985 131980096 -23650024 + L1MD LINE L1 5188 5297 -849 1 1591 1502 53 16 5 chr4 131980096 131980285 -23649835 + B2_Mm2 SINE B2 5 195 0 1 1591 243 268 24 31 chr4 131980285 131980300 -23649820 + L1MD LINE L1 5298 5313 -833 1 1591 262 302 0 0 chr4 131980300 131980363 -23649757 + ID4_ SINE ID 1 63 -20 1 1591 378 0 0 0 chr4 131980371 131980413 -23649707 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1 1591 297 0 0 0 chr4 131980414 131980447 -23649673 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1591 743 164 15 15 chr4 131980461 131980591 -23649529 - B1_Mus1 SINE Alu -16 132 3 1 1591 753 201 78 34 chr4 131980746 131980952 -23649168 + B3 SINE B2 2 216 0 1 1591 1145 68 0 7 chr4 131980952 131981098 -23649022 + B1_Mus2 SINE Alu 1 147 0 1 1591 22 56 0 0 chr4 131981098 131981134 -23648986 + AT_rich Low_complexity Low_complexity 1 36 0 1 1591 252 0 0 0 chr4 131981214 131981242 -23648878 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1 1591 1318 79 15 45 chr4 131981348 131981546 -23648574 + B2_Mm2 SINE B2 3 194 -1 1 1591 549 191 0 0 chr4 131981546 131981656 -23648464 + GA-rich Low_complexity Low_complexity 1 110 0 1 1591 1111 194 118 53 chr4 131981835 131982139 -23647981 - RMER10B LTR ERVL 0 398 75 1 1591 1404 84 5 5 chr4 131982365 131982556 -23647564 + B2_Mm1a SINE B2 1 191 -2 1 1591 902 237 5 37 chr4 131982557 131982772 -23647348 - ID_B1 SINE B4 -15 209 2 1 1591 1243 54 0 0 chr4 131982929 131983076 -23647044 + B1_Mus1 SINE Alu 1 147 -1 1 1591 1063 119 11 0 chr4 131983076 131983252 -23646868 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1591 942 163 0 0 chr4 131983254 131983395 -23646725 + B1_Mur4 SINE Alu 1 141 -9 1 1591 333 0 0 0 chr4 131983455 131983492 -23646628 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1591 423 202 124 9 chr4 131983493 131983598 -23646522 - ID_B1 SINE B4 -8 216 100 1 1591 231 287 78 54 chr4 131983952 131984081 -23646039 + MIRb SINE MIR 126 257 -11 1 1591 251 253 246 6 chr4 131984143 131984310 -23645810 + MIRb SINE MIR 48 254 -14 1 1591 293 215 0 0 chr4 131984457 131984522 -23645598 + B3 SINE B2 150 214 -2 1 1591 1650 32 5 0 chr4 131984562 131984751 -23645369 - B2_Mm1t SINE B2 -3 190 1 1 1591 310 268 0 76 chr4 131984761 131984866 -23645254 + PB1D10 SINE Alu 20 116 -1 1 1591 296 305 35 127 chr4 131984952 131985181 -23644939 + ID_B1 SINE B4 2 209 -15 1 1591 324 174 14 68 chr4 131985434 131985508 -23644612 + B1F SINE Alu 74 143 -6 1 1591 393 22 0 0 chr4 131985511 131985557 -23644563 + (GGA)n Simple_repeat Simple_repeat 1 46 0 1 1591 468 0 0 0 chr4 131985628 131985680 -23644440 + (GTTTG)n Simple_repeat Simple_repeat 3 54 0 1 1591 336 271 83 9 chr4 131985680 131985788 -23644332 - B1_Mur1 SINE Alu -32 117 2 1 1591 656 242 197 0 chr4 131985982 131986160 -23643960 + B3 SINE B2 4 216 0 1 1591 513 204 268 43 chr4 131986182 131986346 -23643774 + B3 SINE B2 1 201 -15 1 1591 204 40 0 0 chr4 131986395 131986420 -23643700 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1591 517 219 62 68 chr4 131986684 131986846 -23643274 - RLTR20A2 LTR ERVK -2 576 416 1 1591 247 152 22 0 chr4 131986831 131986877 -23643243 - RLTR20A2 LTR ERVK -285 283 237 1 1591 688 82 0 0 chr4 131987103 131987199 -23642921 + MTB_Mm LTR MaLR 115 210 -211 1 1591 701 113 0 0 chr4 131987199 131987305 -23642815 + B2_Mm2 SINE B2 2 107 -88 1 1591 1575 55 31 14 chr4 131987383 131987606 -23642514 + MTB_Mm LTR MaLR 181 407 0 1 1591 330 26 0 0 chr4 131987607 131987646 -23642474 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1591 268 156 0 43 chr4 131987646 131987693 -23642427 - B1_Mur1 SINE Alu -32 117 73 1 1591 298 174 101 0 chr4 131987729 131987798 -23642322 - RSINE1 SINE B4 -43 122 47 1 1591 1001 232 28 86 chr4 131987890 131988294 -23641826 + RLTR11B LTR ERVK 1 396 -45 1 1591 366 130 59 15 chr4 131988751 131988848 -23641272 + B1F2 SINE Alu 43 150 0 1 1591 198 345 35 0 chr4 131989336 131989423 -23640697 - L2b LINE L2 -8 3367 3278 1 198 1269 54 0 0 chr4 131989461 131989739 -23640381 + (TG)n Simple_repeat Simple_repeat 1 278 0 1 1592 253 294 0 0 chr4 131989969 131990037 -23640083 + PB1 SINE Alu 48 115 -12 1 1592 561 110 0 0 chr4 131990043 131990143 -23639977 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 1592 310 317 98 45 chr4 131990144 131990276 -23639844 + RSINE1 SINE B4 5 143 -22 1 1592 378 0 0 0 chr4 131990303 131990345 -23639775 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 1592 583 230 28 56 chr4 131990368 131990511 -23639609 - B1_Mur4 SINE Alu -11 139 1 1 1592 698 76 0 37 chr4 131990520 131990629 -23639491 - B2_Mm2 SINE B2 -9 186 82 1 1592 34 0 0 0 chr4 131990631 131990665 -23639455 + AT_rich Low_complexity Low_complexity 1 34 0 1 1592 634 165 116 0 chr4 131990678 131990799 -23639321 + B1_Mur3 SINE Alu 2 136 -13 1 1592 236 53 26 0 chr4 131990818 131990856 -23639264 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1592 799 66 0 40 chr4 131990856 131990972 -23639148 - B1_Mm SINE Alu -9 138 27 1 1592 541 76 13 0 chr4 131990956 131991035 -23639085 - B2_Mm1t SINE B2 -113 80 1 1 1592 509 240 68 147 chr4 131991065 131991372 -23638748 - B4A SINE B4 0 292 10 1 1592 340 296 39 16 chr4 131991458 131991585 -23638535 + B1F1 SINE Alu 12 141 -8 1 1592 261 0 0 0 chr4 131991585 131991614 -23638506 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1592 348 127 0 0 chr4 131991671 131991726 -23638394 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1592 256 202 10 39 chr4 131991728 131991831 -23638289 - Lx9 LINE L1 -127 7517 7418 1 1592 222 37 0 0 chr4 131992435 131992462 -23637658 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1592 250 313 104 30 chr4 131992583 131992718 -23637402 + ID_B1 SINE B4 72 216 -8 1 1592 239 108 0 0 chr4 131992726 131992763 -23637357 + B3A SINE B2 1 37 -161 1 1592 252 304 37 56 chr4 131992730 131992764 -23637356 + ID_B1 SINE B4 118 219 -1 1 1592 317 243 57 0 chr4 131992764 131992834 -23637286 + B1_Mur1 SINE Alu 71 144 -5 1 1592 907 64 40 0 chr4 131992995 131993120 -23637000 + B2_Mm2 SINE B2 2 131 -64 1 1592 243 23 68 0 chr4 131993134 131993178 -23636942 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1592 738 40 0 10 chr4 131993178 131993278 -23636842 - B1_Mm SINE Alu -6 141 43 1 1592 474 33 0 0 chr4 131993294 131993354 -23636766 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1592 348 24 0 0 chr4 131993354 131993394 -23636726 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1 1592 1219 61 0 0 chr4 131993400 131993548 -23636572 + B1_Mus1 SINE Alu 1 148 0 1 1592 252 86 0 0 chr4 131993548 131993583 -23636537 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1592 243 340 32 0 chr4 131993998 131994092 -23636028 + HAL1 LINE L1 762 858 -1649 1 1592 467 233 144 46 chr4 131994203 131994356 -23635764 - B3A SINE B2 -30 168 1 1 1592 1152 49 0 40 chr4 131994383 131994532 -23635588 + B1_Mm SINE Alu 2 144 -3 1 1592 216 86 0 0 chr4 131994532 131994567 -23635553 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1592 745 185 0 88 chr4 131994607 131994623 -23635497 - B1_Mus1 SINE Alu 0 148 134 1 1592 504 0 0 0 chr4 131994623 131994679 -23635441 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1592 745 185 0 88 chr4 131994679 131994822 -23635298 - B1_Mus1 SINE Alu -15 133 3 1 1592 233 312 0 0 chr4 131994842 131994906 -23635214 + C-rich Low_complexity Low_complexity 2 65 0 1 1592 1454 147 45 24 chr4 131994919 131995206 -23634914 + MTB_Mm LTR MaLR 1 293 -114 1 1592 306 50 0 0 chr4 131995210 131995250 -23634870 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1592 1069 43 0 0 chr4 131995250 131995390 -23634730 - B1_Mm SINE Alu -2 145 6 1 1592 372 80 0 0 chr4 131995390 131995440 -23634680 + MTB_Mm LTR MaLR 306 355 -52 1 1592 420 286 44 82 chr4 131995594 131995864 -23634256 + B4A SINE B4 11 270 -22 1 1592 242 354 0 0 chr4 131996157 131996239 -23633881 + PB1 SINE Alu 5 86 -41 1 1592 243 0 0 0 chr4 131996247 131996274 -23633846 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 1592 394 241 0 0 chr4 131996408 131996487 -23633633 - RSINE1 SINE B4 -79 86 8 1 1592 470 352 0 7 chr4 131996547 131996687 -23633433 - RSINE1 SINE B4 -5 160 22 1 1592 225 0 0 0 chr4 131996699 131996724 -23633396 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1592 221 162 12 59 chr4 131996724 131996759 -23633361 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 1592 1143 88 0 0 chr4 131996759 131996906 -23633214 - B1_Mus2 SINE Alu 0 147 1 1 1592 221 162 12 59 chr4 131996906 131996928 -23633192 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1592 1303 92 54 0 chr4 131996928 131997112 -23633008 - B2_Mm2 SINE B2 -1 194 1 1 1592 221 162 12 59 chr4 131997112 131997138 -23632982 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1592 23 0 0 0 chr4 131997138 131997161 -23632959 + AT_rich Low_complexity Low_complexity 1 23 0 1 1592 927 217 14 46 chr4 131997161 131997378 -23632742 - B3 SINE B2 -4 212 3 1 1592 1594 165 97 78 chr4 131997381 131997707 -23632413 + RMER4A LTR ERVK 5 310 -156 1 1592 1017 116 0 0 chr4 131997707 131997862 -23632258 + (GAA)n Simple_repeat Simple_repeat 2 156 0 1 1592 1594 165 97 78 chr4 131997862 131997956 -23632164 + RMER4A LTR ERVK 311 432 -34 1 1592 535 79 0 0 chr4 131997965 131998041 -23632079 + U6 snRNA snRNA 31 106 -1 1 1592 3690 48 0 0 chr4 131998041 131998478 -23631642 + L1_Mus1 LINE L1 6130 6566 -1 1 1592 4163 149 53 57 chr4 131998502 131999932 -23630188 + MurERV4-int LTR ERVK 67 1567 -3693 1 1592 2740 162 19 0 chr4 132000005 132000431 -23629689 + MurERV4-int LTR ERVK 1606 2039 -3221 1 1592 525 163 0 61 chr4 132000462 132000560 -23629560 + MurERV4-int LTR ERVK 2026 2117 -3143 1 1592 739 151 16 16 chr4 132000579 132000707 -23629413 + MurERV4-int LTR ERVK 5133 5260 0 1 1592 402 145 14 0 chr4 132000740 132000809 -23629311 + RMER4A LTR ERVK 33 102 -364 1 1592 1062 96 7 0 chr4 132000809 132000955 -23629165 + B1_Mus1 SINE Alu 2 148 0 2 1592 571 137 98 0 chr4 132000982 132001084 -23629036 + RMER4A LTR ERVK 276 387 -79 1 1592 215 170 0 21 chr4 132001087 132001135 -23628985 + CT-rich Low_complexity Low_complexity 5 51 0 3 1592 562 171 34 17 chr4 132001135 132001254 -23628866 + RMER4A LTR ERVK 346 466 0 1 1592 419 241 83 0 chr4 132001267 132001375 -23628745 - PB1D10 SINE Alu 0 117 1 4 1592 317 217 0 0 chr4 132001406 132001466 -23628654 - ID_B1 SINE B4 -7 217 158 5 1592 2410 74 0 0 chr4 132001472 132001781 -23628339 + ORR1A2 LTR MaLR 7 315 -12 6 1592 338 268 81 11 chr4 132001782 132001869 -23628251 - ID_B1 SINE B4 -62 162 70 5 1592 240 266 62 0 chr4 132001907 132001971 -23628149 - B4A SINE B4 -4 288 221 7 1592 212 143 0 45 chr4 132002444 132002488 -23627632 + T-rich Low_complexity Low_complexity 4 45 0 8 1592 960 111 20 27 chr4 132002489 132002637 -23627483 - B1_Mus1 SINE Alu -1 147 1 9 1592 23 0 0 0 chr4 132002640 132002663 -23627457 + AT_rich Low_complexity Low_complexity 1 23 0 1 1592 293 180 16 32 chr4 132002723 132002786 -23627334 + PB1D10 SINE Alu 51 112 -5 1 1592 771 204 14 0 chr4 132002799 132002946 -23627174 + B1_Mur3 SINE Alu 1 149 0 1 1592 350 250 16 141 chr4 132003007 132003128 -23626992 + MT2B LTR ERVL 152 257 -344 1 1592 845 170 0 22 chr4 132003034 132003172 -23626948 + B1_Mus1 SINE Alu 13 147 -1 1 1592 806 149 7 0 chr4 132003199 132003347 -23626773 + GA-rich Low_complexity Low_complexity 2 150 0 1 1592 904 121 25 0 chr4 132003363 132003520 -23626600 + (GAAA)n Simple_repeat Simple_repeat 4 164 0 1 1592 1200 104 17 6 chr4 132003527 132003701 -23626419 + B2_Mm2 SINE B2 2 177 -18 1 1592 266 138 51 17 chr4 132003711 132003770 -23626350 + B2_Mm2 SINE B2 135 195 0 1 1592 1105 217 14 5 chr4 132003784 132003997 -23626123 + B3 SINE B2 2 216 0 1 1592 237 375 0 0 chr4 132004006 132004078 -23626042 + ID4_ SINE ID 9 80 -3 2 1592 320 216 40 0 chr4 132004096 132004170 -23625950 + B4 SINE B4 1 77 -215 2 1592 725 140 131 8 chr4 132004308 132004438 -23625682 - B1_Mur4 SINE Alu 0 150 5 2 1592 640 243 0 51 chr4 132004556 132004712 -23625408 + B1F2 SINE Alu 2 149 0 2 1592 856 249 6 0 chr4 132004723 132004896 -23625224 + B3A SINE B2 1 174 -24 2 1592 3895 12 0 0 chr4 132004896 132005320 -23624800 + MERVL-int LTR ERVL 2609 3032 -2453 2 1592 342 45 0 0 chr4 132005338 132005382 -23624738 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1592 1374 82 0 25 chr4 132005467 132005666 -23624454 - B2_Mm2 SINE B2 0 195 2 2 1592 736 263 124 15 chr4 132005668 132005869 -23624251 - ID_B1 SINE B4 0 224 2 2 1592 725 216 72 0 chr4 132005887 132006040 -23624080 - RSINE1 SINE B4 0 165 2 2 1592 708 12 0 0 chr4 132006090 132006171 -23623949 + (TTC)n Simple_repeat Simple_repeat 1 81 0 3 1592 381 108 231 51 chr4 132006174 132006252 -23623868 - B1_Mur4 SINE Alu -15 135 44 3 1592 251 164 0 35 chr4 132006254 132006311 -23623809 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 1592 529 221 23 6 chr4 132006323 132006500 -23623620 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1592 449 238 18 6 chr4 132006542 132006707 -23623413 + (CATA)n Simple_repeat Simple_repeat 1 167 0 3 1592 5635 95 9 9 chr4 132006713 132007500 -23622620 + RLTR13D1 LTR ERVK 1 787 -19 3 1592 556 290 118 15 chr4 132007984 132008247 -23621873 + B4 SINE B4 3 292 0 3 1592 220 102 0 93 chr4 132008567 132008610 -23621510 + ID SINE ID 3 41 -183 3 1592 283 301 0 0 chr4 132008648 132008721 -23621399 + ID_B1 SINE B4 143 215 -9 3 1592 480 18 0 0 chr4 132008721 132008778 -23621342 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 1592 278 241 19 0 chr4 132008842 132008896 -23621224 + ID_B1 SINE B4 132 186 -38 4 1592 958 197 19 33 chr4 132008992 132009193 -23620927 + B3 SINE B2 1 196 -20 4 1592 1177 68 0 0 chr4 132009193 132009340 -23620780 + B1_Mm SINE Alu 1 147 0 4 1592 958 197 19 33 chr4 132009340 132009353 -23620767 + B3 SINE B2 197 212 -4 4 1592 305 188 40 0 chr4 132009501 132009572 -23620548 + B1F SINE Alu 1 83 -65 4 1592 692 238 7 0 chr4 132009605 132009748 -23620372 - B1_Mur1 SINE Alu -5 144 1 4 1592 378 251 141 0 chr4 132009843 132009964 -23620156 - PB1D10 SINE Alu -1 149 2 4 1592 226 0 59 0 chr4 132009971 132010005 -23620115 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1592 455 273 108 0 chr4 132010009 132010148 -23619972 - B3A SINE B2 -11 187 34 4 1592 273 225 34 52 chr4 132010139 132010163 -23619957 + B1F1 SINE Alu 33 84 -65 4 1592 254 329 0 14 chr4 132010163 132010234 -23619886 + ID_B1 SINE B4 132 201 -23 4 1592 273 225 34 52 chr4 132010234 132010255 -23619865 + B1F1 SINE Alu 85 136 -13 4 1592 320 233 0 0 chr4 132010248 132010320 -23619800 - ID4 SINE ID -61 91 20 5 1592 363 222 162 0 chr4 132010334 132010433 -23619687 + B1F SINE Alu 35 149 0 4 1592 495 0 0 0 chr4 132010444 132010499 -23619621 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1592 346 200 46 0 chr4 132010584 132010649 -23619471 - B1_Mus1 SINE Alu -70 78 11 5 1592 229 143 0 0 chr4 132010646 132010681 -23619439 + B1_Mm SINE Alu 99 133 -14 5 1592 324 0 0 0 chr4 132010684 132010720 -23619400 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1592 1360 105 21 4 chr4 132010720 132010923 -23619197 + B2_Mm2 SINE B2 7 214 -2 5 1592 268 268 14 40 chr4 132011097 132011171 -23618949 - ID_B1 SINE B4 -67 157 86 5 1592 244 291 26 26 chr4 132011398 132011544 -23618576 + L1M5 LINE L1 4910 5055 -1091 5 1592 274 185 18 18 chr4 132011689 132011744 -23618376 + RSINE1 SINE B4 111 165 0 5 1592 511 278 7 27 chr4 132011761 132011909 -23618211 + ID_B1 SINE B4 78 222 -2 5 1592 512 267 0 0 chr4 132011978 132012083 -23618037 + PB1D7 SINE Alu 3 107 -13 6 1592 511 258 186 37 chr4 132012174 132012335 -23617785 - MTD LTR MaLR 0 419 235 6 1592 382 167 14 43 chr4 132012335 132012473 -23617647 + CT-rich Low_complexity Low_complexity 3 136 0 6 1592 1197 57 0 0 chr4 132012481 132012622 -23617498 - B1_Mus2 SINE Alu -6 141 1 6 1592 340 186 81 18 chr4 132012645 132012726 -23617394 - B1_Mur1 SINE Alu -7 113 38 6 1592 378 265 0 12 chr4 132012747 132012831 -23617289 - PB1 SINE Alu -17 110 28 6 1592 516 173 19 28 chr4 132013010 132013117 -23617003 + B1_Mur3 SINE Alu 2 107 -42 6 1592 491 165 154 0 chr4 132013107 132013198 -23616922 - B1_Mus2 SINE Alu -42 105 1 6 1592 384 202 36 0 chr4 132013388 132013472 -23616648 - PB1D10 SINE Alu -9 108 22 6 1592 350 354 83 19 chr4 132013532 132013748 -23616372 + B4A SINE B4 1 230 -62 6 1592 491 250 57 0 chr4 132013743 132013867 -23616253 + RSINE1 SINE B4 22 152 -13 7 1592 204 217 0 0 chr4 132013999 132014045 -23616075 + GA-rich Low_complexity Low_complexity 3 48 0 7 1592 505 150 167 61 chr4 132014092 132014206 -23615914 - B1_Mur3 SINE Alu -22 127 2 7 1592 740 253 16 21 chr4 132014211 132014401 -23615719 - B3 SINE B2 -27 189 1 7 1592 329 245 0 117 chr4 132014428 132014539 -23615581 - RSINE1 SINE B4 -2 163 66 7 1592 461 249 69 75 chr4 132014689 132014819 -23615301 + L1MEf LINE L1 1896 2026 -4174 7 1592 1041 95 0 52 chr4 132014819 132014974 -23615146 + B1_Mus2 SINE Alu 1 147 0 7 1592 461 275 68 59 chr4 132014974 132015073 -23615047 + L1MEf LINE L1 2011 2109 -4015 7 1592 220 264 276 0 chr4 132015227 132015314 -23614806 + B1F2 SINE Alu 34 144 -5 7 1592 302 340 130 0 chr4 132016215 132016315 -23613805 - RSINE1 SINE B4 -22 143 31 7 1592 796 170 179 5 chr4 132016317 132016518 -23613602 + ORR1D1 LTR MaLR 2 237 -137 7 1592 243 270 93 13 chr4 132016726 132016801 -23613319 + ID4_ SINE ID 3 83 0 8 1592 515 260 102 0 chr4 132016905 132017082 -23613038 + B3A SINE B2 1 195 -3 8 1592 1071 95 0 39 chr4 132017104 132017258 -23612862 + B1_Mus1 SINE Alu 1 148 0 8 1592 194 131 0 62 chr4 132017258 132017316 -23612804 + A-rich Low_complexity Low_complexity 7 60 0 8 1592 558 212 237 17 chr4 132017665 132017838 -23612282 + B3 SINE B2 1 211 -5 8 1592 188 34 0 33 chr4 132018075 132018105 -23612015 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1592 931 199 62 34 chr4 132018105 132018313 -23611807 - B3 SINE B2 -1 215 2 8 1592 555 168 118 50 chr4 132018354 132018473 -23611647 + B1_Mur4 SINE Alu 1 127 -23 8 1592 399 171 0 0 chr4 132018488 132018564 -23611556 + GA-rich Low_complexity Low_complexity 1 76 0 8 1592 537 257 34 34 chr4 132019321 132019470 -23610650 + B1F2 SINE Alu 1 149 0 8 1592 225 0 0 0 chr4 132020026 132020051 -23610069 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1592 283 254 16 0 chr4 132020339 132020402 -23609718 + ID4 SINE ID 1 64 -19 9 1592 318 67 0 0 chr4 132020556 132020601 -23609519 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 9 1592 647 256 80 5 chr4 132020601 132020801 -23609319 + B3 SINE B2 2 216 0 9 1592 782 209 79 16 chr4 132020807 132020997 -23609123 + B3 SINE B2 1 202 -14 9 1592 378 0 0 0 chr4 132020997 132021039 -23609081 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 9 1592 237 188 266 0 chr4 132021429 132021493 -23608627 + ID4 SINE ID 2 82 -1 9 1592 1114 82 7 0 chr4 132021535 132021682 -23608438 + B1_Mus1 SINE Alu 1 148 0 9 1592 570 186 0 10 chr4 132021865 132021968 -23608152 + B1_Mur1 SINE Alu 40 141 -8 9 1592 1587 291 98 45 chr4 132022018 132022927 -23607193 + Lx8 LINE L1 6213 7462 -11 9 1592 397 305 70 32 chr4 132022940 132022964 -23607156 + RSINE1 SINE B4 4 27 -138 1 1592 789 90 0 0 chr4 132022964 132023075 -23607045 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 1 1592 397 305 70 32 chr4 132023075 132023206 -23606914 + RSINE1 SINE B4 28 164 -1 1 1592 278 220 19 0 chr4 132023243 132023304 -23606816 + PB1D9 SINE Alu 1 66 -83 1 1592 272 250 0 45 chr4 132023399 132023466 -23606654 + ID_B1 SINE B4 90 153 -71 1 1592 306 266 5 87 chr4 132023413 132023505 -23606615 + B1F2 SINE Alu 20 107 -13 1 1592 220 299 61 61 chr4 132023520 132023602 -23606518 - B4 SINE B4 -206 86 5 1 1592 203 317 35 96 chr4 132023875 132023894 -23606226 - MIRc SINE MIR -140 128 106 1 1592 450 0 0 0 chr4 132023894 132023944 -23606176 + (GAGAA)n Simple_repeat Simple_repeat 1 50 0 1 1592 203 317 35 96 chr4 132023944 132023984 -23606136 - MIRc SINE MIR -163 105 67 1 1592 225 0 0 0 chr4 132023984 132024009 -23606111 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1592 1254 41 0 0 chr4 132024009 132024154 -23605966 - B1_Mus1 SINE Alu -2 146 2 1 1592 203 317 35 96 chr4 132024154 132024207 -23605913 - MIRc SINE MIR -202 66 23 1 1592 698 312 67 42 chr4 132024472 132024545 -23605575 - B4 SINE B4 0 292 224 1 1592 432 0 0 0 chr4 132024545 132024593 -23605527 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1592 698 312 67 42 chr4 132024593 132024803 -23605317 - B4 SINE B4 -69 223 4 1 1592 336 282 9 52 chr4 132024858 132024968 -23605152 + PB1 SINE Alu 1 107 -10 1 1592 351 325 92 0 chr4 132024973 132025093 -23605027 + RSINE1 SINE B4 6 136 -29 1 1592 21 0 0 0 chr4 132025104 132025125 -23604995 + AT_rich Low_complexity Low_complexity 1 21 0 1 1592 349 258 103 0 chr4 132025141 132025238 -23604882 + PB1D7 SINE Alu 5 111 -9 1 1592 245 244 244 0 chr4 132025292 132025382 -23604738 + B1_Mm SINE Alu 19 130 -17 1 1592 481 215 0 0 chr4 132025307 132025386 -23604734 + ID_B1 SINE B4 132 210 -14 1 1592 184 217 21 21 chr4 132026006 132026053 -23604067 + L2c LINE L2 3237 3283 -104 1 1592 266 364 17 52 chr4 132026543 132026659 -23603461 + ID_B1 SINE B4 42 153 -71 1 1592 629 286 27 0 chr4 132026661 132026808 -23603312 + B3A SINE B2 1 151 -47 1 1592 249 33 0 0 chr4 132026827 132026857 -23603263 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1592 344 229 47 79 chr4 132026952 132027048 -23603072 + B1_Mur4 SINE Alu 7 116 -34 1 1592 3358 41 5 0 chr4 132027048 132027442 -23602678 + MTA_Mm LTR MaLR 1 396 0 1 1592 344 213 19 87 chr4 132027442 132027483 -23602637 + B1_Mur4 SINE Alu 117 149 -1 1 1592 307 299 0 0 chr4 132027486 132027553 -23602567 + ID_B1 SINE B4 151 217 -7 1 1592 221 175 25 0 chr4 132027561 132027601 -23602519 + B3A SINE B2 1 41 -157 1 1592 1210 54 96 0 chr4 132027615 132027782 -23602338 + B2_Mm2 SINE B2 12 194 -1 1 1592 234 62 0 0 chr4 132027793 132027825 -23602295 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1592 902 214 28 0 chr4 132027827 132028009 -23602111 + B3 SINE B2 30 216 0 1 1592 224 307 0 39 chr4 132028017 132028095 -23602025 + B1F SINE Alu 67 141 -8 1 1592 368 281 209 44 chr4 132028117 132028366 -23601754 + B4A SINE B4 2 291 -1 1 1592 408 186 38 12 chr4 132028390 132028634 -23601486 + (CA)n Simple_repeat Simple_repeat 1 250 0 1 1592 366 109 109 0 chr4 132028634 132028698 -23601422 + HAL1-3A_ME LINE L1 1977 2047 -811 1 1592 232 214 44 12 chr4 132029615 132029690 -23600430 - PB1D7 SINE Alu -4 116 41 1 1592 638 13 0 12 chr4 132029700 132029780 -23600340 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1592 29 0 0 0 chr4 132029820 132029849 -23600271 + AT_rich Low_complexity Low_complexity 1 29 0 1 1592 715 169 67 30 chr4 132029855 132029989 -23600131 - B1_Mur4 SINE Alu -7 143 5 1 1592 288 77 0 0 chr4 132030008 132030047 -23600073 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1592 415 138 110 24 chr4 132030102 132030184 -23599936 - RSINE1 SINE B4 -42 123 35 1 1592 346 179 0 0 chr4 132030182 132030238 -23599882 - B1F SINE Alu -13 136 81 1 1592 285 336 70 0 chr4 132030250 132030393 -23599727 + MIRb SINE MIR 37 189 -79 1 1592 283 322 101 57 chr4 132031085 132031097 -23599023 + MT2B2 LTR ERVL 152 175 -409 1 1592 505 171 0 0 chr4 132031097 132031179 -23598941 + B1_Mus1 SINE Alu 1 82 -66 1 1592 283 322 101 57 chr4 132031179 132031243 -23598877 + MT2B2 LTR ERVL 176 316 -268 1 1592 279 329 82 20 chr4 132031360 132031506 -23598614 - YREP_Mm Unknown Unknown -1478 334 180 1 1592 585 241 0 17 chr4 132031393 132031511 -23598609 + ID_B1 SINE B4 109 224 0 1 1592 315 288 27 62 chr4 132031535 132031647 -23598473 - PB1D10 SINE Alu -12 105 1 1 1592 268 255 39 48 chr4 132031724 132031827 -23598293 + MLT1E2 LTR MaLR 85 186 -441 1 1592 669 191 7 37 chr4 132031831 132031967 -23598153 + B1_Mur4 SINE Alu 3 134 -16 1 1592 689 230 22 0 chr4 132032333 132032472 -23597648 + B1F SINE Alu 8 149 0 1 1592 227 132 0 0 chr4 132032702 132032740 -23597380 + L1M4 LINE L1 5874 5911 -267 1 1592 213 39 0 0 chr4 132032741 132032767 -23597353 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1 1592 327 284 63 0 chr4 132032770 132032865 -23597255 - ID_B1 SINE B4 -44 180 80 1 1592 203 136 45 0 chr4 132032869 132032913 -23597207 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1 1592 1145 81 0 13 chr4 132032913 132033063 -23597057 - B1_Mus1 SINE Alu 0 148 1 1 1592 360 0 0 0 chr4 132033076 132033116 -23597004 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1592 1101 50 0 0 chr4 132033247 132033386 -23596734 + B1_Mus1 SINE Alu 10 148 0 1 1592 482 287 32 8 chr4 132033435 132033558 -23596562 + ID_B1 SINE B4 85 210 -14 1 1592 254 228 0 25 chr4 132033559 132033610 -23596510 + (TAA)n Simple_repeat Simple_repeat 3 52 0 1 1592 4459 175 22 80 chr4 132033610 132034568 -23595552 + RMER19B LTR ERVK 1 902 0 1 1592 254 228 0 25 chr4 132034568 132034597 -23595523 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1592 668 225 132 0 chr4 132034617 132034643 -23595477 + ID SINE ID 17 48 -176 1 1592 459 0 0 0 chr4 132034643 132034694 -23595426 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1592 668 225 132 0 chr4 132034694 132034818 -23595302 + ID_B1 SINE B4 49 186 -38 1 1592 1180 62 7 0 chr4 132035329 132035474 -23594646 - B1_Mm SINE Alu 0 147 2 1 1592 653 223 70 28 chr4 132035578 132035721 -23594399 - B1F2 SINE Alu 0 149 1 1 1592 515 173 30 47 chr4 132035777 132035895 -23594225 - B1_Mur3 SINE Alu 0 149 32 1 1592 924 43 0 0 chr4 132035900 132036016 -23594104 + B1_Mm SINE Alu 1 116 -31 1 1592 315 277 40 97 chr4 132036055 132036179 -23593941 - PB1D7 SINE Alu -2 118 2 1 1592 531 31 0 0 chr4 132036180 132036245 -23593875 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1592 210 132 0 26 chr4 132036250 132036289 -23593831 - PB1D7 SINE Alu -18 102 65 1 1592 759 245 56 15 chr4 132036257 132036452 -23593668 - ID_B1 SINE B4 -21 203 1 1 1592 683 236 27 20 chr4 132036470 132036617 -23593503 - B1F SINE Alu -1 148 1 1 1592 2692 46 0 47 chr4 132036668 132037011 -23593109 + ORR1A2 LTR MaLR 1 327 0 1 1592 207 344 65 35 chr4 132037589 132037818 -23592302 + L2c LINE L2 3102 3337 -50 1 1592 216 0 0 0 chr4 132037898 132037922 -23592198 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1592 1921 83 40 79 chr4 132037923 132038251 -23591869 - ORR1A4 LTR MaLR -4 325 11 1 1592 297 100 0 0 chr4 132038251 132038301 -23591819 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1592 1153 88 0 0 chr4 132038301 132038449 -23591671 - B1_Mus1 SINE Alu 0 148 1 1 1592 270 132 0 0 chr4 132038609 132038662 -23591458 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1592 721 204 0 39 chr4 132038707 132038860 -23591260 - B1_Mur1 SINE Alu -1 148 2 1 1592 440 304 0 60 chr4 132039660 132039781 -23590339 + B4A SINE B4 109 221 -71 1 1592 652 228 47 71 chr4 132039781 132039953 -23590167 + B3A SINE B2 1 166 -32 1 1592 198 0 0 0 chr4 132039953 132039975 -23590145 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1592 650 245 53 81 chr4 132039975 132040011 -23590109 + B3 SINE B2 164 202 -14 1 1592 690 268 66 0 chr4 132040116 132040299 -23589821 - MER20 DNA MER1_type 0 219 25 1 1592 441 54 0 0 chr4 132040573 132040629 -23589491 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1 1592 608 222 0 0 chr4 132040630 132040747 -23589373 - B1_Mur2 SINE Alu -29 120 4 1 1592 190 218 69 52 chr4 132040900 132040958 -23589162 - MIRb SINE MIR -201 67 9 1 1592 1155 70 0 0 chr4 132041058 132041200 -23588920 + B1_Mus2 SINE Alu 1 142 -5 1 1592 180 0 0 0 chr4 132041204 132041224 -23588896 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1592 234 0 0 0 chr4 132041265 132041291 -23588829 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1592 450 233 0 0 chr4 132041305 132041391 -23588729 - RSINE1 SINE B4 -76 89 4 1 1592 1623 42 0 0 chr4 132041460 132041651 -23588469 + B2_Mm1a SINE B2 1 191 -2 1 1592 181 167 30 0 chr4 132041769 132041801 -23588319 + A-rich Low_complexity Low_complexity 3 35 0 1 1592 408 192 9 75 chr4 132041801 132041908 -23588212 + U13 snRNA snRNA 5 104 -4 1 1592 181 167 30 0 chr4 132041908 132041941 -23588179 + A-rich Low_complexity Low_complexity 36 69 0 1 1592 255 93 0 0 chr4 132041957 132042000 -23588120 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1592 830 246 72 0 chr4 132042056 132042263 -23587857 - ID_B1 SINE B4 0 224 3 1 1592 231 146 0 0 chr4 132042277 132042318 -23587802 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1 1592 309 269 10 31 chr4 132042318 132042414 -23587706 - B1_Mus1 SINE Alu -44 104 11 1 1592 259 264 209 0 chr4 132042440 132042531 -23587589 - PB1D10 SINE Alu -2 115 6 1 1592 244 278 112 10 chr4 132042547 132042645 -23587475 - PB1D10 SINE Alu -5 112 5 1 1592 1029 110 0 20 chr4 132042696 132042844 -23587276 - B1_Mur4 SINE Alu 0 150 6 1 1592 1531 58 5 0 chr4 132042869 132043058 -23587062 - B2_Mm1t SINE B2 -2 191 2 1 1592 416 311 80 24 chr4 132043114 132043214 -23586906 + PB1D10 SINE Alu 1 110 -39 1 1592 234 0 0 0 chr4 132043214 132043240 -23586880 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2 1592 407 311 80 24 chr4 132043240 132043264 -23586856 + B1F SINE Alu 111 132 -17 1 1592 1104 72 0 0 chr4 132043325 132043463 -23586657 + B1_Mus2 SINE Alu 2 139 -8 2 1592 234 0 0 0 chr4 132043463 132043489 -23586631 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1592 22 0 0 0 chr4 132043617 132043639 -23586481 + AT_rich Low_complexity Low_complexity 1 22 0 2 1592 415 220 3 9 chr4 132043808 132043890 -23586230 + PB1D9 SINE Alu 1 80 -234 2 1592 33 66 0 0 chr4 132043890 132043951 -23586169 + AT_rich Low_complexity Low_complexity 1 61 0 2 1592 231 302 48 0 chr4 132044272 132044335 -23585785 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 2 1592 230 355 54 0 chr4 132044284 132044377 -23585743 + ID_B1 SINE B4 22 119 -105 2 1592 415 295 94 24 chr4 132044420 132044632 -23585488 - RLTR12B LTR ERVK -300 228 2 2 1592 519 271 23 0 chr4 132044722 132044855 -23585265 - B1F1 SINE Alu -12 137 2 2 1592 237 256 11 79 chr4 132045746 132045835 -23584285 + ID_B1 SINE B4 142 224 0 2 1592 492 240 0 121 chr4 132046064 132046079 -23584041 + ID_B1 SINE B4 78 151 -73 2 1592 815 165 0 43 chr4 132046079 132046218 -23583902 + B1_Mur2 SINE Alu 10 142 -7 2 1592 492 240 0 121 chr4 132046218 132046230 -23583890 + ID_B1 SINE B4 152 223 -1 2 1592 357 319 26 9 chr4 132046256 132046370 -23583750 + RSINE1 SINE B4 19 134 -31 2 1592 233 82 0 93 chr4 132046370 132046398 -23583722 + A-rich Low_complexity Low_complexity 1 24 0 2 1592 746 68 248 0 chr4 132046398 132046515 -23583605 + B1_Mus2 SINE Alu 2 147 0 2 1592 233 82 0 93 chr4 132046515 132046540 -23583580 + A-rich Low_complexity Low_complexity 25 49 0 2 1592 657 191 72 14 chr4 132047029 132047167 -23582953 - B1_Mur3 SINE Alu 0 149 4 2 1592 502 261 97 30 chr4 132047167 132047301 -23582819 - B3A SINE B2 -54 144 2 2 1592 229 351 26 0 chr4 132047702 132047779 -23582341 - ID4_ SINE ID -3 80 2 2 1592 242 265 194 9 chr4 132049905 132050031 -23580089 - MIRc SINE MIR -80 196 48 2 1592 789 143 64 7 chr4 132050031 132050172 -23579948 + B1_Mur4 SINE Alu 2 150 0 2 1592 467 244 78 0 chr4 132051198 132051313 -23578807 - ID_B1 SINE B4 -3 221 98 2 1592 280 281 74 52 chr4 132051201 132051336 -23578784 + YREP_Mm Unknown Unknown 183 320 -1492 2 1592 195 42 0 0 chr4 132051361 132051385 -23578735 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1592 330 294 29 19 chr4 132051407 132051511 -23578609 + PB1D7 SINE Alu 15 119 -1 2 1592 644 258 0 63 chr4 132051825 132051999 -23578121 + RSINE1 SINE B4 3 165 0 2 1592 488 329 22 0 chr4 132052335 132052472 -23577648 + B1F1 SINE Alu 10 149 0 2 1592 216 163 0 0 chr4 132052482 132052525 -23577595 + A-rich Low_complexity Low_complexity 2 44 0 2 1592 456 288 49 24 chr4 132054182 132054346 -23575774 - ID_B1 SINE B4 -47 177 10 2 1592 317 237 53 0 chr4 132054415 132054491 -23575629 + PB1D7 SINE Alu 40 119 -1 2 1592 315 261 137 51 chr4 132055394 132055511 -23574609 + MIRm SINE MIR 19 148 -128 2 1592 1641 32 0 0 chr4 132056152 132056341 -23573779 - B2_Mm1t SINE B2 -4 189 1 2 1592 305 207 51 17 chr4 132056367 132056426 -23573694 - ID2 SINE ID -3 80 20 2 1592 21 0 0 0 chr4 132056443 132056464 -23573656 + AT_rich Low_complexity Low_complexity 1 21 0 2 1592 841 146 50 28 chr4 132056471 132056612 -23573508 - B1_Mur3 SINE Alu -5 144 1 2 1592 419 208 0 14 chr4 132056665 132056738 -23573382 + ID4_ SINE ID 1 72 -11 2 1592 620 255 157 30 chr4 132056890 132057088 -23573032 - ID_B1 SINE B4 0 224 2 2 1592 383 221 0 38 chr4 132057150 132057230 -23572890 - ID4 SINE ID -4 79 3 2 1592 304 311 155 8 chr4 132057292 132057426 -23572694 - MIR SINE MIR -92 170 23 2 1592 1103 57 50 0 chr4 132057516 132057656 -23572464 + B1_Mm SINE Alu 1 147 0 2 1592 198 0 0 0 chr4 132057660 132057682 -23572438 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 2 1592 936 104 0 0 chr4 132057837 132057962 -23572158 + B1_Mus1 SINE Alu 1 125 -23 2 1592 1539 37 26 21 chr4 132057962 132058153 -23571967 + B2_Mm1a SINE B2 1 192 -1 2 1592 1300 20 0 0 chr4 132058157 132058304 -23571816 + B1_Mm SINE Alu 1 147 0 2 1592 195 42 0 0 chr4 132058304 132058328 -23571792 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1592 501 238 145 16 chr4 132058908 132059032 -23571088 + RSINE1 SINE B4 14 153 -12 2 1592 677 206 0 14 chr4 132059057 132059198 -23570922 + B1_Mur2 SINE Alu 5 138 -10 2 1592 217 235 41 133 chr4 132059305 132059403 -23570717 - BC1_Mm scRNA scRNA -57 95 7 2 1592 345 100 0 0 chr4 132060148 132060198 -23569922 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2 1592 192 77 0 0 chr4 132060199 132060225 -23569895 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1592 1202 75 0 0 chr4 132060242 132060389 -23569731 - B1_Mus1 SINE Alu 0 148 2 2 1592 497 98 171 0 chr4 132060398 132060480 -23569640 - B1_Mus2 SINE Alu -7 140 45 2 1592 1099 91 7 0 chr4 132060555 132060698 -23569422 + B1_Mus1 SINE Alu 5 148 0 2 1592 21 36 0 0 chr4 132060698 132060726 -23569394 + AT_rich Low_complexity Low_complexity 1 28 0 2 1592 693 75 0 86 chr4 132060949 132061065 -23569055 - B1_Mus2 SINE Alu -9 138 33 2 1592 442 257 9 37 chr4 132061216 132061325 -23568795 + PB1 SINE Alu 19 124 -3 2 1592 294 98 0 0 chr4 132061693 132061744 -23568376 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1592 419 125 321 9 chr4 132062579 132062691 -23567429 + B2_Mm2 SINE B2 49 195 0 2 1592 259 325 8 84 chr4 132063359 132063490 -23566630 - MIRb SINE MIR -34 234 114 2 1592 1151 36 7 0 chr4 132064046 132064186 -23565934 - B1_Mus1 SINE Alu 0 148 8 2 1592 561 178 0 0 chr4 132064218 132064308 -23565812 + PB1D7 SINE Alu 24 113 -7 2 1592 232 309 114 35 chr4 132064233 132064347 -23565773 + MT2B2 LTR ERVL 196 318 -266 2 1592 188 207 110 0 chr4 132064540 132064622 -23565498 - MIR SINE MIR -30 232 142 2 1592 254 109 43 21 chr4 132065083 132065130 -23564990 + MIRc SINE MIR 112 159 -109 2 1592 1146 69 21 0 chr4 132067770 132067914 -23562206 + B1_Mus2 SINE Alu 1 147 0 2 1592 234 289 79 0 chr4 132068613 132068689 -23561431 - ID4 SINE ID 0 83 2 2 1592 1241 41 21 0 chr4 132068741 132068886 -23561234 + B1_Mus1 SINE Alu 1 148 0 2 1592 261 0 0 0 chr4 132068891 132068920 -23561200 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2 1592 1151 83 6 0 chr4 132068920 132069076 -23561044 - B2_Mm1t SINE B2 -35 158 2 2 1592 327 268 117 26 chr4 132069372 132069526 -23560594 - MIRb SINE MIR -66 202 31 2 1592 316 309 140 18 chr4 132069575 132069746 -23560374 - MamRep605 Unknown Unknown -226 650 459 2 1592 207 316 13 0 chr4 132069807 132069883 -23560237 - L2b LINE L2 -2 3373 3297 2 1592 202 221 352 9 chr4 132071235 132071340 -23558780 + MIRb SINE MIR 64 204 -64 2 1592 421 283 0 110 chr4 132071731 132071894 -23558226 - ID_B1 SINE B4 0 224 80 2 1592 484 92 0 0 chr4 132071921 132071986 -23558134 + ID4 SINE ID 6 70 -13 2 1592 1290 14 7 0 chr4 132072060 132072205 -23557915 + B1_Mus2 SINE Alu 2 147 0 2 1592 390 91 0 0 chr4 132072307 132072362 -23557758 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1592 293 0 27 0 chr4 132072456 132072493 -23557627 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1592 1129 79 0 0 chr4 132072493 132072632 -23557488 - B1_Mus1 SINE Alu -9 139 1 2 1592 201 26 79 0 chr4 132072709 132072747 -23557373 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 2 1592 1332 80 0 0 chr4 132072978 132073153 -23556967 + B2_Mm2 SINE B2 1 175 -20 2 1592 426 103 0 0 chr4 132073172 132073230 -23556890 - B2_Mm2 SINE B2 -136 59 2 2 1592 384 248 10 19 chr4 132073435 132073538 -23556582 + PB1D10 SINE Alu 1 102 -15 2 1592 980 229 52 0 chr4 132073573 132073765 -23556355 + B3 SINE B2 1 202 -14 2 1592 564 245 30 30 chr4 132073858 132074022 -23556098 - RSINE1 SINE B4 0 165 2 2 1592 629 159 55 153 chr4 132074280 132074443 -23555677 + B1_Mus2 SINE Alu 1 147 0 2 1592 336 176 11 32 chr4 132074455 132074520 -23555600 + A-rich Low_complexity Low_complexity 4 68 0 2 1592 1330 98 0 72 chr4 132074520 132074701 -23555419 + B2_Mm2 SINE B2 2 169 -26 2 1592 1496 73 5 0 chr4 132074701 132074892 -23555228 + B2_Mm1a SINE B2 1 192 -1 2 1592 1330 98 0 72 chr4 132074892 132074919 -23555201 + B2_Mm2 SINE B2 170 195 0 2 1592 1376 80 32 0 chr4 132074923 132075110 -23555010 + B2_Mm1a SINE B2 1 193 0 2 1592 336 176 11 32 chr4 132075110 132075133 -23554987 + A-rich Low_complexity Low_complexity 69 91 0 2 1592 246 266 45 30 chr4 132075136 132075202 -23554918 - PB1 SINE Alu -52 75 9 2 1592 727 207 126 7 chr4 132075427 132075578 -23554542 - B3 SINE B2 -3 213 45 2 1592 778 228 96 10 chr4 132075606 132075772 -23554348 + B3 SINE B2 1 167 -49 2 1592 383 0 21 0 chr4 132075772 132075819 -23554301 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2 1592 778 228 96 10 chr4 132075819 132075851 -23554269 + B3 SINE B2 168 216 0 2 1592 748 239 51 47 chr4 132075874 132076089 -23554031 + B3 SINE B2 1 216 0 2 1592 462 258 0 0 chr4 132076263 132076352 -23553768 + ID_B1 SINE B4 82 170 -54 2 1592 419 267 48 0 chr4 132076269 132076374 -23553746 + PB1D10 SINE Alu 7 116 -1 2 1592 1164 82 0 0 chr4 132077275 132077421 -23552699 + B1_Mus2 SINE Alu 2 147 0 2 1592 180 125 0 0 chr4 132077421 132077453 -23552667 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1592 336 238 0 151 chr4 132077455 132077574 -23552546 + MT2B LTR ERVL 155 255 -346 3 1592 725 163 16 47 chr4 132077471 132077600 -23552520 + B1_Mur4 SINE Alu 5 129 -21 3 1592 1199 55 146 0 chr4 132077705 132077870 -23552250 + B2_Mm2 SINE B2 2 190 -5 3 1592 629 290 74 74 chr4 132077901 132078117 -23552003 + B4A SINE B4 1 216 -76 3 1592 441 0 0 0 chr4 132078122 132078171 -23551949 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1592 455 220 44 0 chr4 132078174 132078265 -23551855 + B1F SINE Alu 2 96 -53 3 1592 937 222 0 38 chr4 132078405 132078588 -23551532 - B3 SINE B2 -14 202 27 3 1592 201 121 0 0 chr4 132078604 132078637 -23551483 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1592 1250 131 5 50 chr4 132078638 132078839 -23551281 - B2_Mm1t SINE B2 -1 192 1 3 1592 820 207 106 5 chr4 132078859 132079048 -23551072 - B3 SINE B2 -8 208 1 3 1592 1285 122 17 0 chr4 132079056 132079237 -23550883 - B2_Mm2 SINE B2 -11 184 1 3 1592 549 266 24 0 chr4 132079240 132079364 -23550756 - ID_B1 SINE B4 0 224 98 3 1592 461 262 6 21 chr4 132079382 132079494 -23550626 + PB1D10 SINE Alu 1 92 -25 3 1592 751 107 73 8 chr4 132079487 132079610 -23550510 + B1_Mur3 SINE Alu 18 148 -1 3 1592 1313 101 26 5 chr4 132079634 132079824 -23550296 + B2_Mm2 SINE B2 2 195 0 3 1592 260 345 57 40 chr4 132079841 132079852 -23550268 + B4 SINE B4 80 143 -149 3 1592 287 279 87 26 chr4 132079852 132079957 -23550163 + B1F2 SINE Alu 6 108 -41 3 1592 216 235 108 81 chr4 132080014 132080088 -23550032 + B1F SINE Alu 35 110 -39 3 1592 280 367 57 16 chr4 132080639 132080761 -23549359 + L2b LINE L2 3244 3370 -5 3 1592 230 279 0 113 chr4 132080796 132080893 -23549227 + ID_B1 SINE B4 29 114 -110 3 1592 485 229 39 65 chr4 132080899 132081053 -23549067 + B4A SINE B4 15 164 -128 3 1592 318 331 50 0 chr4 132081062 132081201 -23548919 - RMER15 LTR ERVL -7 568 423 3 1592 236 184 0 39 chr4 132081402 132081453 -23548667 + B4A SINE B4 189 237 -55 3 1592 1543 42 16 5 chr4 132081455 132081644 -23548476 + B2_Mm2 SINE B2 1 191 -4 3 1592 269 151 17 86 chr4 132081693 132081751 -23548369 + ID_B1 SINE B4 158 211 -13 3 1592 399 21 0 0 chr4 132081751 132081799 -23548321 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1592 1156 83 7 0 chr4 132081939 132082084 -23548036 + B1_Mus1 SINE Alu 3 148 0 3 1592 276 269 172 0 chr4 132082317 132082410 -23547710 - PB1D10 SINE Alu 0 117 9 3 1592 889 184 7 0 chr4 132082458 132082605 -23547515 + B1_Mur3 SINE Alu 1 148 -1 3 1592 657 230 186 17 chr4 132082617 132082794 -23547326 - B3 SINE B2 -9 207 1 3 1592 567 53 0 0 chr4 132082916 132082991 -23547129 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1592 430 312 5 59 chr4 132083007 132083181 -23546939 - B4A SINE B4 -3 289 125 3 1592 274 273 0 0 chr4 132083204 132083259 -23546861 - B4A SINE B4 -235 57 3 3 1592 773 98 87 24 chr4 132083406 132083532 -23546588 - B1_Mus1 SINE Alu -1 147 14 3 1592 1460 68 5 21 chr4 132083532 132083726 -23546394 + B2_Mm1a SINE B2 1 191 -2 3 1592 264 286 0 79 chr4 132084140 132084216 -23545904 + ID4_ SINE ID 1 70 -13 3 1592 1301 72 33 11 chr4 132084259 132084442 -23545678 + B2_Mm2 SINE B2 1 187 -8 3 1592 1260 41 0 0 chr4 132084570 132084716 -23545404 - B1_Mus2 SINE Alu -1 146 1 3 1592 1067 138 50 0 chr4 132084744 132084925 -23545195 + B2_Mm1a SINE B2 1 190 -3 3 1592 966 82 88 15 chr4 132084927 132085064 -23545056 + B1_Mus1 SINE Alu 2 148 0 3 1592 231 214 0 0 chr4 132085065 132085135 -23544985 + A-rich Low_complexity Low_complexity 1 70 0 3 1592 585 244 24 24 chr4 132085135 132085261 -23544859 + RSINE1 SINE B4 3 128 -37 3 1592 495 0 0 0 chr4 132085321 132085376 -23544744 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1592 230 224 34 17 chr4 132085542 132085601 -23544519 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 3 1592 617 186 43 34 chr4 132085621 132085634 -23544486 - B1_Mur4 SINE Alu -32 118 108 3 1592 216 0 0 0 chr4 132085634 132085658 -23544462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1592 617 186 43 34 chr4 132085658 132085761 -23544359 - B1_Mur4 SINE Alu -43 107 1 3 1592 1160 82 0 0 chr4 132085818 132085965 -23544155 - B1_Mus2 SINE Alu 0 147 1 3 1592 742 169 213 21 chr4 132086257 132086445 -23543675 - URR1B DNA MER1_type -1 224 1 3 1592 435 218 5 7 chr4 132086860 132086964 -23543156 + B3 SINE B2 43 146 -49 3 1592 635 239 122 22 chr4 132086982 132087172 -23542948 + B3 SINE B2 2 216 0 3 1592 515 317 5 65 chr4 132087168 132087367 -23542753 + B3A SINE B2 6 192 -6 3 1592 234 0 0 0 chr4 132087389 132087415 -23542705 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1592 490 184 45 80 chr4 132087451 132087563 -23542557 - B1_Mur2 SINE Alu -21 128 21 3 1592 704 268 13 0 chr4 132087570 132087727 -23542393 - B3 SINE B2 -54 162 4 3 1592 977 74 204 0 chr4 132087764 132087926 -23542194 - B2_Mm2 SINE B2 0 195 1 3 1592 367 215 15 0 chr4 132088110 132088175 -23541945 + B1F1 SINE Alu 1 66 -83 3 1592 1322 108 32 0 chr4 132088183 132088369 -23541751 - B2_Mm1t SINE B2 -1 192 1 3 1592 194 231 57 19 chr4 132090010 132090063 -23540057 + L2b LINE L2 3108 3162 -213 3 1592 395 272 25 81 chr4 132090226 132090250 -23539870 + ID_B1 SINE B4 72 222 -2 3 1592 548 252 29 7 chr4 132090250 132090386 -23539734 + B1F2 SINE Alu 10 148 -1 3 1592 401 224 11 34 chr4 132090458 132090546 -23539574 + RSINE1 SINE B4 69 154 -11 3 1592 22 0 0 0 chr4 132090557 132090579 -23539541 + AT_rich Low_complexity Low_complexity 1 22 0 3 1592 398 257 99 0 chr4 132090661 132090762 -23539358 - ID_B1 SINE B4 -19 205 95 3 1592 243 293 47 31 chr4 132090766 132090893 -23539227 + L1M4 LINE L1 5698 5826 -348 3 1592 575 205 26 9 chr4 132090904 132091017 -23539103 - B1_Mm SINE Alu -5 142 28 3 1592 752 160 54 3 chr4 132091044 132091190 -23538930 + B1_Mur4 SINE Alu 1 150 0 3 1592 217 397 0 0 chr4 132092083 132092161 -23537959 + L2c LINE L2 3310 3387 0 3 1592 262 256 179 0 chr4 132092355 132092433 -23537687 - PB1D10 SINE Alu -7 110 19 3 1592 1130 75 14 0 chr4 132092462 132092608 -23537512 + B1_Mus1 SINE Alu 1 148 0 3 1592 22 0 0 0 chr4 132092610 132092632 -23537488 + AT_rich Low_complexity Low_complexity 1 22 0 3 1592 25 0 0 0 chr4 132092825 132092850 -23537270 + AT_rich Low_complexity Low_complexity 1 25 0 3 1592 555 179 58 32 chr4 132092851 132092984 -23537136 - B1_Mur3 SINE Alu 0 150 1 3 1592 721 280 32 32 chr4 132092989 132093210 -23536910 - ID_B1 SINE B4 -2 222 2 3 1592 991 158 32 11 chr4 132093464 132093649 -23536471 + B2_Mm2 SINE B2 1 189 -6 3 1592 708 286 69 23 chr4 132093718 132093936 -23536184 - B4A SINE B4 -5 287 60 3 1592 198 0 0 0 chr4 132094326 132094348 -23535772 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1592 423 242 81 0 chr4 132094348 132094447 -23535673 - PB1D7 SINE Alu -11 109 3 3 1592 1402 75 32 5 chr4 132094449 132094638 -23535482 - B2_Mm2 SINE B2 0 195 2 3 1592 682 112 41 14 chr4 132094664 132094809 -23535311 - RMER17B LTR ERVK -498 460 312 3 1592 479 265 42 49 chr4 132094818 132094961 -23535159 - B1F SINE Alu -7 142 1 3 1592 235 264 75 65 chr4 132095222 132095315 -23534805 + MT2B2 LTR ERVL 147 240 -344 3 1592 598 219 17 9 chr4 132095263 132095378 -23534742 + B1_Mur1 SINE Alu 34 149 0 3 1592 266 211 112 31 chr4 132095489 132095587 -23534533 - PB1D10 SINE Alu -1 116 11 3 1592 307 311 60 101 chr4 132095800 132096018 -23534102 - B3 SINE B2 -1 215 7 3 1592 840 181 0 26 chr4 132096160 132096313 -23533807 - B1_Mur3 SINE Alu 0 149 1 3 1592 640 232 49 161 chr4 132096361 132096526 -23533594 - B3A SINE B2 -14 184 42 3 1592 1642 21 5 16 chr4 132096526 132096720 -23533400 - B2_Mm1t SINE B2 0 193 2 3 1592 640 232 49 161 chr4 132096720 132096759 -23533361 - B3A SINE B2 -157 41 3 3 1592 343 232 168 113 chr4 132096761 132096946 -23533174 - B3A SINE B2 -2 196 2 3 1592 314 295 137 0 chr4 132096948 132097043 -23533077 - PB1D7 SINE Alu 0 120 13 3 1592 305 295 25 13 chr4 132097443 132097522 -23532598 - ID_B1 SINE B4 -8 216 137 3 1592 261 336 47 32 chr4 132097536 132097669 -23532451 - B1F2 SINE Alu -16 133 1 3 1592 868 264 39 10 chr4 132097796 132098003 -23532117 - ID_B1 SINE B4 -1 223 11 3 1592 577 256 135 0 chr4 132098451 132098584 -23531536 + RSINE1 SINE B4 4 154 -11 3 1592 1177 55 7 0 chr4 132099101 132099247 -23530873 - B1_Mus2 SINE Alu 0 147 1 3 1592 318 327 65 41 chr4 132099571 132099740 -23530380 - MIRb SINE MIR -46 222 50 3 1592 374 173 103 39 chr4 132100153 132100231 -23529889 + ID4_ SINE ID 1 83 0 3 1592 274 339 16 118 chr4 132101101 132101228 -23528892 - PB1D10 SINE Alu -1 116 3 3 1592 353 237 13 0 chr4 132101266 132101342 -23528778 - ID_B1 SINE B4 -5 219 143 3 1592 654 251 36 12 chr4 132101360 132101525 -23528595 - B3 SINE B2 -11 205 37 3 1592 513 0 0 0 chr4 132101625 132101682 -23528438 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1592 296 206 0 73 chr4 132102782 132102850 -23527270 + B3 SINE B2 57 119 -97 3 1592 1317 75 17 0 chr4 132102841 132103014 -23527106 + B2_Mm2 SINE B2 6 181 -14 4 1592 711 75 32 0 chr4 132103028 132103121 -23526999 - U6 snRNA snRNA -10 97 2 4 1592 22 35 0 0 chr4 132103121 132103150 -23526970 + AT_rich Low_complexity Low_complexity 1 29 0 4 1592 346 262 0 127 chr4 132103234 132103352 -23526768 + MT2B LTR ERVL 155 257 -344 4 1592 706 223 0 8 chr4 132103247 132103369 -23526751 + B1_Mur2 SINE Alu 1 121 -28 4 1592 595 166 261 25 chr4 132103372 132103533 -23526587 - MTC LTR MaLR -140 281 83 4 1592 434 209 124 0 chr4 132103926 132104031 -23526089 - MTC LTR MaLR -301 120 3 4 1592 384 224 0 0 chr4 132104040 132104138 -23525982 + (CATA)n Simple_repeat Simple_repeat 4 101 0 4 1592 899 199 111 35 chr4 132104186 132104384 -23525736 - B3 SINE B2 -2 214 2 4 1592 435 286 100 81 chr4 132104421 132104581 -23525539 + B3A SINE B2 4 166 -32 4 1592 962 43 0 0 chr4 132104623 132104740 -23525380 + B1_Mm SINE Alu 31 147 0 4 1592 189 0 0 0 chr4 132104740 132104761 -23525359 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1592 545 257 177 11 chr4 132104771 132104952 -23525168 + B3 SINE B2 1 211 -5 4 1592 511 218 20 0 chr4 132104963 132105064 -23525056 + PB1D7 SINE Alu 15 117 -3 4 1592 1236 35 0 7 chr4 132105824 132105967 -23524153 + B1_Mus1 SINE Alu 1 142 -6 4 1592 180 111 0 0 chr4 132105972 132105999 -23524121 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1592 239 211 19 0 chr4 132106493 132106545 -23523575 + ID4 SINE ID 1 53 -30 4 1592 588 271 7 41 chr4 132106809 132106955 -23523165 + ID_B1 SINE B4 84 224 0 4 1592 510 256 0 0 chr4 132107055 132107235 -23522885 + G-rich Low_complexity Low_complexity 1 180 0 4 1592 308 293 69 124 chr4 132107913 132107935 -23522185 - B4 SINE B4 -48 244 185 4 1592 598 248 20 34 chr4 132107935 132108081 -23522039 - B1F SINE Alu 0 149 6 4 1592 308 293 69 124 chr4 132108081 132108131 -23521989 - B4 SINE B4 -48 184 39 4 1592 656 214 48 35 chr4 132108468 132108613 -23521507 + B1_Mur2 SINE Alu 3 149 0 4 1592 274 247 68 0 chr4 132109777 132109850 -23520270 + ID4_ SINE ID 2 79 -4 4 1592 1213 68 0 0 chr4 132111710 132111856 -23518264 - B1_Mus2 SINE Alu 0 147 2 4 1592 456 86 0 0 chr4 132112811 132112881 -23517239 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1592 1426 55 33 0 chr4 132113088 132113270 -23516850 + B2_Mm1t SINE B2 2 189 -4 4 1592 1340 79 11 11 chr4 132113270 132113431 -23516689 + B2_Mm1a SINE B2 2 162 -31 4 1592 257 0 0 29 chr4 132113431 132113465 -23516655 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1592 1340 79 11 11 chr4 132113465 132113494 -23516626 + B2_Mm1a SINE B2 163 192 -1 4 1592 499 281 65 123 chr4 132113516 132113715 -23516405 + B3 SINE B2 18 204 -12 4 1592 243 0 0 0 chr4 132113720 132113747 -23516373 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1592 1475 44 17 6 chr4 132113747 132113928 -23516192 + B2_Mm2 SINE B2 1 183 -12 4 1592 183 42 0 0 chr4 132113928 132113952 -23516168 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1592 751 213 85 14 chr4 132113956 132114137 -23515983 + B3A SINE B2 2 186 -9 4 1592 399 56 0 0 chr4 132114404 132114458 -23515662 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1592 350 348 42 67 chr4 132114542 132114782 -23515338 - L1M5 LINE L1 -1310 4836 4603 4 1592 490 248 59 105 chr4 132114908 132115004 -23515116 - B1_Mus2 SINE Alu 0 147 54 4 1592 1397 93 0 10 chr4 132115004 132115200 -23514920 + B2_Mm2 SINE B2 2 195 0 4 1592 490 248 59 105 chr4 132115200 132115256 -23514864 - B1_Mus2 SINE Alu -94 53 2 4 1592 744 227 65 0 chr4 132115445 132115599 -23514521 - RSINE1 SINE B4 0 165 2 4 1592 703 250 36 21 chr4 132115649 132115841 -23514279 + B3A SINE B2 2 196 -2 4 1592 287 385 8 15 chr4 132115939 132116071 -23514049 - MER20 DNA MER1_type -86 133 3 4 1592 408 227 341 0 chr4 132116179 132116311 -23513809 - B3 SINE B2 0 216 40 4 1592 180 0 0 0 chr4 132116317 132116337 -23513783 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1592 1259 54 0 0 chr4 132116337 132116484 -23513636 - B1_Mus2 SINE Alu 0 147 1 4 1592 456 19 0 0 chr4 132116516 132116569 -23513551 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1592 1368 56 39 0 chr4 132116627 132116805 -23513315 - B2_Mm1a SINE B2 -7 186 2 4 1592 1497 74 0 5 chr4 132116823 132117014 -23513106 - B2_Mm2 SINE B2 -5 190 1 4 1592 494 204 0 0 chr4 132117019 132117107 -23513013 - PB1D9 SINE Alu -2 118 31 4 1592 524 237 8 22 chr4 132117123 132117257 -23512863 - B1F SINE Alu 0 149 18 4 1592 456 19 0 0 chr4 132117274 132117327 -23512793 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1592 648 246 15 0 chr4 132117327 132117461 -23512659 - B1F SINE Alu -13 136 1 4 1592 333 164 58 29 chr4 132117468 132117537 -23512583 - B1_Mur2 SINE Alu 0 149 79 4 1592 361 241 37 154 chr4 132117501 132117557 -23512563 + MT2B2 LTR ERVL 114 256 -328 4 1592 711 136 0 28 chr4 132117557 132117663 -23512457 + B1_Mur3 SINE Alu 1 103 -46 4 1592 317 268 39 58 chr4 132117615 132117718 -23512402 - B1_Mm SINE Alu -46 101 1 4 1592 447 52 0 0 chr4 132117727 132117785 -23512335 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1592 1252 41 0 7 chr4 132117989 132118137 -23511983 + B1_Mus2 SINE Alu 1 147 0 4 1592 212 0 0 35 chr4 132118176 132118205 -23511915 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1592 945 122 14 54 chr4 132118208 132118355 -23511765 - B1_Mur3 SINE Alu -8 141 1 4 1592 213 108 0 0 chr4 132118379 132118416 -23511704 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1592 523 260 79 0 chr4 132118428 132118555 -23511565 - RSINE1 SINE B4 -24 141 5 4 1592 678 243 90 43 chr4 132118562 132118773 -23511347 - B4A SINE B4 -64 228 8 4 1592 536 249 64 64 chr4 132118809 132118998 -23511122 - ID_B1 SINE B4 -15 209 18 4 1592 323 295 58 72 chr4 132119673 132119812 -23510308 - HAL1-3A_ME LINE L1 -436 2422 2286 4 24 717 272 6 0 chr4 132120433 132120591 -23509529 - RSINE1 SINE B4 -6 159 1 4 1593 330 312 15 39 chr4 132120595 132120668 -23509452 - B1F SINE Alu -5 144 70 4 1593 802 232 77 5 chr4 132120668 132120863 -23509257 - B3 SINE B2 -7 209 1 4 1593 330 312 15 39 chr4 132120863 132120919 -23509201 - B1F SINE Alu -80 69 19 4 1593 240 241 90 22 chr4 132120995 132121102 -23509018 + MIR SINE MIR 6 122 -146 4 1593 709 176 8 8 chr4 132121797 132121917 -23508203 + ID_B1 SINE B4 86 205 -19 4 1593 779 138 14 8 chr4 132122184 132122541 -23507579 + (TCTA)n Simple_repeat Simple_repeat 1 359 0 4 1593 227 136 0 0 chr4 132122541 132122585 -23507535 - Lx6 LINE L1 -53 7407 7364 4 1593 242 282 135 40 chr4 132123078 132123254 -23506866 - MIRc SINE MIR -64 204 5 4 1593 28 0 0 0 chr4 132123837 132123865 -23506255 + AT_rich Low_complexity Low_complexity 1 28 0 4 1593 344 250 71 0 chr4 132123865 132123949 -23506171 - B1_Mur1 SINE Alu 0 149 60 4 1593 215 31 0 30 chr4 132123952 132123985 -23506135 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1593 638 203 24 31 chr4 132124002 132124129 -23505991 - B1_Mus1 SINE Alu -18 130 5 4 1593 573 231 9 0 chr4 132124184 132124292 -23505828 + PB1D7 SINE Alu 1 109 -11 4 1593 577 253 102 144 chr4 132124324 132124629 -23505491 + B4 SINE B4 1 292 0 4 1593 287 162 0 39 chr4 132124632 132124735 -23505385 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1593 266 287 131 52 chr4 132124737 132124925 -23505195 - RLTR21 LTR ERVK -264 1308 1066 4 1593 275 146 0 77 chr4 132124925 132124977 -23505143 - B3A SINE B2 -149 49 2 4 1593 266 287 131 52 chr4 132124977 132125042 -23505078 - RLTR21 LTR ERVK -264 1065 980 4 1593 782 222 72 16 chr4 132125113 132125309 -23504811 - B3 SINE B2 -1 194 4 4 1593 678 276 82 14 chr4 132125352 132125572 -23504548 - B4A SINE B4 -8 284 50 4 1593 469 284 104 6 chr4 132125801 132125936 -23504184 - B1F1 SINE Alu 0 149 1 4 1593 448 269 49 69 chr4 132125953 132126097 -23504023 - B1F2 SINE Alu -8 141 1 4 1593 550 280 30 8 chr4 132125970 132126103 -23504017 - ID_B1 SINE B4 -13 211 76 4 1593 610 192 133 0 chr4 132126127 132126247 -23503873 + B1_Mur1 SINE Alu 1 136 -13 4 1593 219 69 0 0 chr4 132126248 132126277 -23503843 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 1593 720 185 37 0 chr4 132126466 132126601 -23503519 - B1_Mur1 SINE Alu 0 149 10 4 1593 1416 84 16 5 chr4 132126738 132126929 -23503191 - B2_Mm2 SINE B2 -1 194 2 4 1593 279 54 0 0 chr4 132127192 132127229 -23502891 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1593 512 136 3 0 chr4 132128068 132128156 -23501964 - B1_Mur4 SINE Alu 0 150 60 4 1593 299 301 30 68 chr4 132128162 132128294 -23501826 + MT2B LTR ERVL 138 264 -337 4 1593 853 128 0 57 chr4 132128189 132128330 -23501790 + B1_Mur3 SINE Alu 17 149 0 4 1593 312 329 0 0 chr4 132128471 132128553 -23501567 + ID4_ SINE ID 2 83 0 4 1593 599 301 78 34 chr4 132129195 132129463 -23500657 - Charlie1a DNA MER1_type -158 1297 1018 4 1593 248 266 0 123 chr4 132129746 132129819 -23500301 - RMER15 LTR ERVL -105 470 407 4 1593 255 191 0 0 chr4 132129837 132129900 -23500220 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1593 302 252 156 25 chr4 132130009 132130131 -23499989 - B4A SINE B4 -128 164 27 4 1593 252 283 0 16 chr4 132130078 132130139 -23499981 - B3A SINE B2 -119 79 20 4 1593 351 0 0 0 chr4 132130140 132130179 -23499941 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1593 890 94 7 59 chr4 132130181 132130316 -23499804 - B1_Mur3 SINE Alu -13 136 9 4 1593 1132 83 73 52 chr4 132130324 132130337 -23499783 - B2_Mm2 SINE B2 0 195 183 5 1593 1184 75 0 0 chr4 132130337 132130484 -23499636 - B1_Mus2 SINE Alu 0 147 1 5 1593 750 78 0 0 chr4 132130489 132130591 -23499529 + (TTC)n Simple_repeat Simple_repeat 2 103 0 5 1593 1132 83 73 52 chr4 132130591 132130762 -23499358 - B2_Mm2 SINE B2 -13 182 1 5 1593 296 180 48 16 chr4 132130798 132130860 -23499260 - PB1D9 SINE Alu 0 120 57 5 1593 252 355 53 63 chr4 132130890 132130920 -23499200 - Charlie1a DNA MER1_type -832 623 588 4 1593 289 203 0 0 chr4 132130920 132130979 -23499141 - ID_B1 SINE B4 -1 223 165 5 1593 252 355 53 63 chr4 132130979 132131191 -23498929 - Charlie1a DNA MER1_type -832 587 326 4 1593 433 190 0 139 chr4 132131173 132131295 -23498825 + MT2B LTR ERVL 153 257 -344 5 1593 952 150 0 0 chr4 132131190 132131330 -23498790 + B1_Mur4 SINE Alu 1 140 -10 5 1593 183 80 0 0 chr4 132131343 132131368 -23498752 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 5 1593 418 356 18 24 chr4 132131410 132131574 -23498546 + RSINE1 SINE B4 1 163 -2 5 1593 378 0 0 0 chr4 132131576 132131618 -23498502 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 5 1593 943 82 174 19 chr4 132131642 132131803 -23498317 - B2_Mm1t SINE B2 -6 187 2 5 1593 23 0 0 0 chr4 132131836 132131859 -23498261 + AT_rich Low_complexity Low_complexity 1 23 0 5 1593 413 244 0 0 chr4 132131975 132132053 -23498067 - B1_Mur3 SINE Alu -54 95 18 5 1593 653 252 14 7 chr4 132132005 132132145 -23497975 + B1_Mur4 SINE Alu 8 148 -2 5 1593 1252 28 7 0 chr4 132132618 132132762 -23497358 + B1_Mus2 SINE Alu 3 147 0 5 1593 552 100 0 0 chr4 132132762 132132842 -23497278 + (A)n Simple_repeat Simple_repeat 1 80 0 5 1593 418 186 175 10 chr4 132132891 132132994 -23497126 + PB1D9 SINE Alu 1 120 0 5 1593 254 64 0 60 chr4 132133001 132133051 -23497069 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1593 1057 256 56 124 chr4 132133053 132133464 -23496656 - MTD LTR MaLR -28 391 9 5 1593 272 238 0 12 chr4 132133543 132133628 -23496492 + GA-rich Low_complexity Low_complexity 1 84 0 5 1593 710 259 0 0 chr4 132134147 132134286 -23495834 - B1F SINE Alu -9 140 2 5 1593 260 352 44 100 chr4 132134286 132134327 -23495793 - B4A SINE B4 -74 218 49 5 1593 250 231 77 0 chr4 132134328 132134406 -23495714 - L1MC4 LINE L1 -449 7593 7510 5 1593 458 275 21 48 chr4 132134509 132134654 -23495466 - B1F2 SINE Alu -5 144 4 5 1593 479 208 64 28 chr4 132134697 132134806 -23495314 - B3 SINE B2 -6 210 98 5 1593 520 271 54 0 chr4 132134855 132134984 -23495136 - RSINE1 SINE B4 -25 140 5 5 1593 352 178 123 0 chr4 132135019 132135092 -23495028 - MLT1A1 LTR MaLR -326 82 1 5 1593 220 208 0 0 chr4 132135780 132135828 -23494292 + CT-rich Low_complexity Low_complexity 3 50 0 5 1593 617 310 52 62 chr4 132136950 132137239 -23492881 - ORR1E LTR MaLR -2 357 72 5 1593 433 287 34 27 chr4 132137250 132137397 -23492723 + RSINE1 SINE B4 1 148 -17 5 1593 1194 41 0 26 chr4 132137613 132137764 -23492356 - B1_Mus1 SINE Alu 0 148 2 5 1593 229 225 63 63 chr4 132138498 132138593 -23491527 - MER113A DNA MER1_type -2 312 218 5 1593 928 127 49 0 chr4 132138633 132138775 -23491345 - B1_Mur4 SINE Alu 0 150 2 5 1593 191 318 106 0 chr4 132138803 132138888 -23491232 - MIRb SINE MIR -70 198 105 5 1593 703 107 39 0 chr4 132139013 132139116 -23491004 - B2_Mm1t SINE B2 -85 108 2 5 1593 343 286 107 0 chr4 132139419 132139531 -23490589 - L1M5 LINE L1 -531 5663 5540 5 1593 431 214 56 11 chr4 132139561 132139651 -23490469 - B1_Mur1 SINE Alu -5 144 51 5 1593 1194 75 0 0 chr4 132140131 132140278 -23489842 + B1_Mus2 SINE Alu 1 147 0 5 1593 213 39 0 0 chr4 132140278 132140304 -23489816 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1593 667 268 0 7 chr4 132140530 132140669 -23489451 + B1F1 SINE Alu 2 139 -10 5 1593 499 138 232 27 chr4 132140678 132140790 -23489330 - B1_Mur4 SINE Alu -1 149 15 5 1593 4287 99 66 20 chr4 132141029 132141677 -23488443 + RLTR33 LTR ERVK 1 678 0 5 1593 245 279 125 12 chr4 132141681 132141761 -23488359 + RLTR13D2 LTR ERVK 250 338 -685 5 1593 202 51 24 49 chr4 132141987 132142028 -23488092 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1593 797 144 45 0 chr4 132142030 132142162 -23487958 - B1_Mur3 SINE Alu 0 149 12 5 1593 315 227 30 120 chr4 132142074 132142174 -23487946 - MT2B LTR ERVL -344 257 167 5 1593 673 234 94 11 chr4 132142271 132142564 -23487556 + L1MB3 LINE L1 5169 5518 -653 5 1593 651 276 6 35 chr4 132142579 132142752 -23487368 - ID_B1 SINE B4 0 224 57 5 1593 243 0 0 0 chr4 132142765 132142792 -23487328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1593 1153 75 0 13 chr4 132142794 132142943 -23487177 - B1_Mus2 SINE Alu 0 147 1 5 1593 227 310 0 0 chr4 132143010 132143068 -23487052 + L1M5 LINE L1 5517 5574 -870 5 1593 258 343 57 0 chr4 132143084 132143189 -23486931 + PB1D9 SINE Alu 10 120 0 5 1593 736 145 80 80 chr4 132143267 132143417 -23486703 - B1_Mur4 SINE Alu 0 150 1 5 1593 703 264 104 25 chr4 132143474 132143754 -23486366 + L1MB3 LINE L1 5621 5922 -261 5 1593 549 245 56 93 chr4 132143756 132143918 -23486202 - B3 SINE B2 -60 156 1 5 1593 1195 221 148 44 chr4 132143923 132144064 -23486056 + MTE2b LTR MaLR 30 170 -209 5 1593 1271 167 18 5 chr4 132144064 132144281 -23485839 - URR1B DNA MER1_type -3 222 3 5 1593 1195 221 148 44 chr4 132144281 132144456 -23485664 + MTE2b LTR MaLR 171 379 0 5 1593 267 304 115 0 chr4 132144821 132144935 -23485185 + MER63A DNA AcHobo 30 155 -55 5 1593 277 270 75 43 chr4 132144949 132145042 -23485078 + MIRc SINE MIR 61 156 -112 5 1593 611 274 8 16 chr4 132145135 132145291 -23484829 - ID_B1 SINE B4 -52 240 82 5 1593 337 292 52 26 chr4 132146130 132146171 -23483949 + B3A SINE B2 2 40 -158 5 1593 895 147 35 0 chr4 132146171 132146302 -23483818 + B1_Mur4 SINE Alu 3 138 -12 5 1593 339 25 0 0 chr4 132146302 132146342 -23483778 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 1593 895 147 35 0 chr4 132146342 132146353 -23483767 + B1_Mur4 SINE Alu 139 149 -1 5 1593 337 292 52 26 chr4 132146353 132146427 -23483693 + B3A SINE B2 41 120 -78 5 1593 838 140 15 0 chr4 132147653 132147789 -23482331 - B1_Mur3 SINE Alu -3 146 9 5 1593 237 279 31 38 chr4 132147676 132147836 -23482284 - ORR1B1-int LTR MaLR -741 768 610 5 1593 782 191 0 14 chr4 132147818 132147961 -23482159 - B1F SINE Alu 0 149 9 5 1593 2371 123 38 3 chr4 132147984 132148350 -23481770 - RLTR14 LTR ERV1 0 382 4 5 1593 480 313 8 8 chr4 132148449 132148581 -23481539 - B1F2 SINE Alu -17 132 1 5 1593 366 262 36 27 chr4 132148621 132148731 -23481389 - PB1D10 SINE Alu -2 115 5 5 1593 663 157 0 226 chr4 132149158 132149339 -23480781 + B1F SINE Alu 3 142 -7 5 1593 732 267 7 17 chr4 132149350 132149543 -23480577 + B3 SINE B2 3 187 -11 5 1593 188 0 0 69 chr4 132149550 132149579 -23480541 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 5 1593 214 214 0 0 chr4 132149641 132149683 -23480437 + ID4_ SINE ID 1 42 -41 5 1593 186 71 0 0 chr4 132149772 132149800 -23480320 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 5 1593 192 27 26 51 chr4 132150548 132150587 -23479533 + (TTA)n Simple_repeat Simple_repeat 1 38 0 5 1593 408 264 96 72 chr4 132150610 132150623 -23479497 - B2_Mm2 SINE B2 -24 171 159 5 1593 264 91 0 0 chr4 132150623 132150667 -23479453 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1593 707 215 72 5 chr4 132150667 132150820 -23479300 - B3A SINE B2 -37 158 1 5 1593 933 242 85 52 chr4 132150902 132151171 -23478949 + MTD LTR MaLR 2 279 -140 5 1593 1243 173 95 11 chr4 132151171 132151434 -23478686 + RMER4B LTR ERVK 1 285 -300 5 1593 431 193 12 24 chr4 132151425 132151510 -23478610 + MTD LTR MaLR 322 405 -14 5 1593 417 203 0 0 chr4 132151629 132151703 -23478417 + ID_B1 SINE B4 81 154 -70 5 1593 408 181 36 12 chr4 132151630 132151706 -23478414 + B1F2 SINE Alu 1 78 -71 5 1593 372 297 101 8 chr4 132151706 132151825 -23478295 + RSINE1 SINE B4 3 132 -33 5 1593 468 0 0 0 chr4 132151849 132151901 -23478219 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1593 407 297 135 28 chr4 132152446 132152771 -23477349 - Lx8 LINE L1 -202 7271 6912 5 1593 787 115 0 49 chr4 132152793 132153128 -23476992 + CT-rich Low_complexity Low_complexity 1 318 0 5 1593 234 143 0 0 chr4 132153137 132153186 -23476934 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1593 302 314 102 41 chr4 132153186 132153382 -23476738 - L1MEg LINE L1 -5000 1084 877 5 1593 696 178 2 3 chr4 132153388 132153979 -23476141 + CT-rich Low_complexity Low_complexity 1 589 0 5 1593 522 231 26 71 chr4 132153996 132154150 -23475970 - ID_B1 SINE B4 0 224 78 5 1593 180 0 0 0 chr4 132154481 132154501 -23475619 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1593 780 232 7 0 chr4 132154519 132154661 -23475459 - RSINE1 SINE B4 -21 144 2 5 1593 192 77 0 0 chr4 132154672 132154698 -23475422 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1593 235 301 83 83 chr4 132154704 132154716 -23475404 - B2_Mm1t SINE B2 -1 192 181 5 1593 770 197 35 0 chr4 132154716 132154858 -23475262 + B1_Mur2 SINE Alu 2 148 -1 5 1593 235 301 83 83 chr4 132154858 132154883 -23475237 - B2_Mm1t SINE B2 -13 180 163 5 1593 387 0 0 0 chr4 132154883 132154926 -23475194 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1593 653 244 53 1 chr4 132154926 132155079 -23475041 - B3A SINE B2 -31 162 1 5 1593 621 293 29 0 chr4 132155225 132155365 -23474755 - RSINE1 SINE B4 -17 148 5 5 1593 507 258 64 8 chr4 132155369 132155494 -23474626 - ID_B1 SINE B4 -1 223 92 5 1593 433 224 26 0 chr4 132155504 132155613 -23474507 - PB1D10 SINE Alu -18 131 16 5 1593 301 337 11 0 chr4 132155534 132155629 -23474491 - ID_B1 SINE B4 -48 176 81 5 1593 1255 80 57 11 chr4 132155638 132155815 -23474305 - B2_Mm2 SINE B2 -9 186 2 5 1593 706 319 110 20 chr4 132155816 132156171 -23473949 - MER34A LTR ERV1 -179 392 6 5 1593 305 324 50 61 chr4 132156814 132156840 -23473280 - L1MEg LINE L1 -4024 2060 2034 6 1593 946 143 14 0 chr4 132156840 132156987 -23473133 - B1_Mur4 SINE Alu -1 149 1 6 1593 305 324 50 61 chr4 132156987 132157141 -23472979 - L1MEg LINE L1 -4051 2033 1883 6 1593 1237 54 0 0 chr4 132157146 132157293 -23472827 - B1_Mus2 SINE Alu 0 147 1 6 1593 2167 147 95 11 chr4 132157359 132157737 -23472383 - MTC LTR MaLR -8 413 4 6 1593 186 337 24 20 chr4 132157968 132158087 -23472033 + MIR SINE MIR 66 185 -83 6 1593 699 220 135 16 chr4 132158182 132158367 -23471753 + ID_B1 SINE B4 2 208 -16 6 1593 1147 44 0 7 chr4 132158438 132158576 -23471544 - B1_Mus1 SINE Alu -10 138 2 6 1593 186 43 0 0 chr4 132158588 132158611 -23471509 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1593 813 174 30 0 chr4 132158612 132158744 -23471376 - B1_Mus1 SINE Alu -12 136 1 6 1593 2306 138 35 16 chr4 132159255 132159631 -23470489 - RMER4A LTR ERVK 0 466 84 6 1593 449 156 10 62 chr4 132159667 132159763 -23470357 - RMER4A LTR ERVK -370 96 6 6 1593 1202 75 0 0 chr4 132159947 132160094 -23470026 - B1_Mus2 SINE Alu 0 147 1 6 1593 725 237 50 39 chr4 132160200 132160380 -23469740 - B3A SINE B2 -16 182 1 6 1593 1434 75 16 0 chr4 132160405 132160593 -23469527 - B2_Mm2 SINE B2 -3 192 2 6 1593 22 35 0 0 chr4 132160918 132160947 -23469173 + AT_rich Low_complexity Low_complexity 1 29 0 6 1593 987 134 0 26 chr4 132160948 132161101 -23469019 - B1_Mur4 SINE Alu -1 149 1 6 1593 389 281 16 58 chr4 132161182 132161303 -23468817 + MIR SINE MIR 117 232 -30 6 1593 1472 70 11 0 chr4 132161383 132161570 -23468550 - B2_Mm1a SINE B2 -4 189 1 6 1593 403 216 0 64 chr4 132162092 132162186 -23467934 - B1F SINE Alu -8 141 54 6 1593 3470 60 2 47 chr4 132162227 132162698 -23467422 + L1_Mus2 LINE L1 6117 6566 0 6 1593 1184 58 0 0 chr4 132162704 132162841 -23467279 + B1_Mus1 SINE Alu 1 137 -11 6 1593 266 73 0 24 chr4 132163221 132163263 -23466857 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 6 1593 1454 85 5 0 chr4 132163353 132163542 -23466578 - B2_Mm1t SINE B2 -3 190 1 6 1593 253 260 155 29 chr4 132163553 132163656 -23466464 - PB1D10 SINE Alu -1 116 1 6 1593 384 167 291 10 chr4 132163877 132163980 -23466140 - B3 SINE B2 -83 133 2 6 1593 452 244 258 11 chr4 132164113 132164291 -23465829 + ID_B1 SINE B4 2 223 -1 6 1593 255 253 59 69 chr4 132164376 132164511 -23465609 + MLT1A1 LTR MaLR 212 386 -22 6 1593 378 0 0 0 chr4 132164517 132164559 -23465561 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1593 619 101 0 16 chr4 132164559 132164630 -23465490 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1593 257 109 0 18 chr4 132164630 132164686 -23465434 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1593 619 101 0 16 chr4 132164686 132164735 -23465385 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1593 836 189 27 0 chr4 132164735 132164883 -23465237 - B3A SINE B2 -46 152 1 6 1593 1938 101 57 31 chr4 132165266 132165583 -23464537 - ORR1A4 LTR MaLR 0 329 5 6 1593 253 266 66 59 chr4 132165705 132165841 -23464279 - MIR SINE MIR 0 262 126 6 1593 797 225 114 5 chr4 132165895 132166096 -23464024 + ID_B1 SINE B4 2 224 0 6 1593 909 108 22 17 chr4 132166100 132166278 -23463842 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1593 363 181 0 0 chr4 132166306 132166378 -23463742 + GA-rich Low_complexity Low_complexity 3 74 0 6 1593 595 263 31 19 chr4 132166417 132166576 -23463544 + RSINE1 SINE B4 5 165 0 6 1593 252 269 0 0 chr4 132166748 132166800 -23463320 - ID4 SINE ID -13 70 19 6 1593 336 269 9 9 chr4 132166822 132166927 -23463193 - L1MB8 LINE L1 -6 6172 6068 6 1593 465 279 81 33 chr4 132166971 132167242 -23462878 + B4A SINE B4 2 285 -7 6 1593 217 324 15 0 chr4 132168089 132168157 -23461963 + CT-rich Low_complexity Low_complexity 2 70 0 6 1593 306 208 0 0 chr4 132168290 132168343 -23461777 - B1F1 SINE Alu -32 117 65 6 1593 284 204 0 0 chr4 132168343 132168392 -23461728 - B1F1 SINE Alu -35 114 66 6 1593 297 196 0 0 chr4 132168392 132168443 -23461677 - B1F1 SINE Alu -34 115 65 6 1593 284 204 0 0 chr4 132168443 132168492 -23461628 - B1F1 SINE Alu -35 114 66 6 1593 420 224 0 0 chr4 132168492 132168568 -23461552 - B1_Mur1 SINE Alu -34 115 40 6 1593 239 190 17 0 chr4 132168758 132168816 -23461304 + (CATATA)n Simple_repeat Simple_repeat 3 61 0 6 1593 240 35 0 0 chr4 132168841 132168870 -23461250 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1593 1232 21 0 0 chr4 132168872 132169012 -23461108 - B1_Mm SINE Alu -6 141 2 6 1593 492 272 13 39 chr4 132169241 132169394 -23460726 - RSINE1 SINE B4 0 165 17 6 1593 437 303 76 31 chr4 132169434 132169659 -23460461 - L1M4 LINE L1 -2082 4064 3830 6 1593 218 244 0 0 chr4 132169704 132169749 -23460371 - PB1 SINE Alu -7 120 76 6 1593 236 232 130 0 chr4 132169717 132169786 -23460334 - B1F1 SINE Alu -50 99 22 6 1593 1298 101 6 11 chr4 132169874 132170054 -23460066 + B2_Mm1t SINE B2 1 179 -14 6 1593 323 152 161 31 chr4 132170139 132170251 -23459869 + B2_Mm2 SINE B2 47 192 -1 6 1593 474 65 0 0 chr4 132170252 132170314 -23459806 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 6 1593 691 208 42 0 chr4 132170328 132170472 -23459648 + B3 SINE B2 29 178 -38 6 1593 243 0 0 0 chr4 132170825 132170852 -23459268 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1593 768 101 0 0 chr4 132170852 132170961 -23459159 - B1_Mur4 SINE Alu -11 139 31 6 1593 1510 165 71 19 chr4 132171068 132171437 -23458683 - RLTR1 LTR ERV1 0 624 136 6 1593 374 242 78 57 chr4 132171547 132171740 -23458380 - B3A SINE B2 0 198 2 6 1593 429 287 70 6 chr4 132171772 132171930 -23458190 + MER34A LTR ERV1 51 218 -353 6 1593 377 258 25 2 chr4 132172080 132172188 -23457932 + PB1D10 SINE Alu 1 109 -8 6 1593 261 0 0 0 chr4 132172192 132172221 -23457899 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 1593 299 264 0 40 chr4 132172221 132172296 -23457824 + ID4_ SINE ID 3 74 -9 6 1593 425 162 0 26 chr4 132172330 132172406 -23457714 + ID_B1 SINE B4 149 222 -2 6 1593 264 119 0 0 chr4 132172407 132172449 -23457671 + ID_B1 SINE B4 180 221 -3 6 1593 271 70 0 65 chr4 132172450 132172496 -23457624 + ID_B1 SINE B4 180 222 -2 6 1593 392 238 75 19 chr4 132172565 132172672 -23457448 - PB1D10 SINE Alu 0 117 5 6 1593 747 164 12 11 chr4 132172818 132172989 -23457131 - B2_Mm2 SINE B2 -26 167 1 6 1593 387 369 104 45 chr4 132173019 132173354 -23456766 + ORR1E LTR MaLR 1 355 -4 6 1593 784 125 102 7 chr4 132173607 132173744 -23456376 - B1_Mur4 SINE Alu 0 150 1 6 1593 458 307 35 46 chr4 132174026 132174200 -23455920 + MER5A DNA MER1_type 3 174 -15 6 1593 336 264 43 65 chr4 132174266 132174359 -23455761 + B3 SINE B2 95 185 -31 6 1593 261 301 0 27 chr4 132174575 132174650 -23455470 - PB1D7 SINE Alu -6 114 42 6 1593 391 254 119 0 chr4 132175543 132175610 -23454510 + B3 SINE B2 84 150 -66 6 1593 351 0 0 0 chr4 132175610 132175649 -23454471 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1593 391 254 119 0 chr4 132175649 132175699 -23454421 + B3 SINE B2 151 214 -2 6 1593 2461 140 15 94 chr4 132175727 132176184 -23453936 + MTC LTR MaLR 1 421 0 6 1593 791 216 18 0 chr4 132176190 132176357 -23453763 - B3A SINE B2 -15 183 14 6 1593 1157 88 0 0 chr4 132176405 132176553 -23453567 - B1_Mus1 SINE Alu 0 148 1 6 1593 651 281 65 94 chr4 132176562 132176754 -23453366 + RMER4A LTR ERVK 57 250 -216 6 1593 245 51 0 25 chr4 132176754 132176794 -23453326 + (CTG)n Simple_repeat Simple_repeat 2 40 0 6 1593 651 281 65 94 chr4 132176794 132177014 -23453106 + RMER4A LTR ERVK 251 457 -9 6 1593 383 157 83 12 chr4 132177142 132177226 -23452894 + ID_B1 SINE B4 133 222 -2 6 1593 714 271 61 96 chr4 132177298 132177787 -23452333 - RLTR11A2 LTR ERVK -55 472 1 6 1593 410 195 44 0 chr4 132177889 132177985 -23452135 + PB1D10 SINE Alu 1 120 -7 6 1593 470 257 191 0 chr4 132178076 132178212 -23451908 - RSINE1 SINE B4 0 165 4 6 1593 186 71 0 0 chr4 132178908 132178936 -23451184 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1593 1102 53 13 0 chr4 132179128 132179278 -23450842 + B2_Mm2 SINE B2 2 153 -42 6 1593 234 62 0 0 chr4 132179310 132179342 -23450778 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 6 1593 919 132 0 0 chr4 132179402 132179546 -23450574 - B1_Mur4 SINE Alu 0 150 7 6 1593 672 194 7 7 chr4 132179747 132179882 -23450238 - B1F2 SINE Alu -5 144 10 6 1593 2594 175 115 148 chr4 132179890 132180823 -23449297 + RMER19B LTR ERVK 1 902 0 6 1593 460 81 13 13 chr4 132180838 132180913 -23449207 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1593 1040 221 14 9 chr4 132180972 132181182 -23448938 - B3 SINE B2 -5 211 1 6 1593 720 267 68 0 chr4 132181208 132181399 -23448721 - B3 SINE B2 -11 205 2 6 1593 797 260 63 25 chr4 132181399 132181622 -23448498 - B4A SINE B4 -58 234 3 6 1593 194 81 27 0 chr4 132181641 132181678 -23448442 + (TTG)n Simple_repeat Simple_repeat 1 38 0 6 1593 469 217 0 0 chr4 132181683 132181775 -23448345 - ID_B1 SINE B4 -1 223 132 6 1593 223 204 0 0 chr4 132181738 132181782 -23448338 - PB1D10 SINE Alu -30 87 44 6 1593 608 219 0 0 chr4 132182104 132182223 -23447897 - PB1D9 SINE Alu -1 119 1 6 1593 843 259 20 0 chr4 132182246 132182447 -23447673 - B3 SINE B2 -6 210 6 7 1593 1239 77 53 0 chr4 132182463 132182633 -23447487 + B2_Mm1t SINE B2 1 179 -14 7 1593 425 65 36 0 chr4 132182657 132182759 -23447361 + B2_Mm2 SINE B2 47 187 -8 7 1593 1540 53 0 21 chr4 132182769 132182960 -23447160 + B2_Mm1t SINE B2 1 187 -6 7 1593 498 211 96 15 chr4 132182980 132183115 -23447005 - B3A SINE B2 -12 204 59 7 1593 477 226 185 0 chr4 132183149 132183295 -23446825 - ID_B1 SINE B4 -16 208 36 7 1593 720 218 101 53 chr4 132183484 132183673 -23446447 - B3 SINE B2 -18 198 1 7 1593 599 140 7 20 chr4 132183691 132183837 -23446283 + (TG)n Simple_repeat Simple_repeat 2 145 0 7 1593 267 277 15 0 chr4 132183841 132183906 -23446214 - ID4_ SINE ID -17 66 1 7 1593 307 328 0 72 chr4 132184220 132184345 -23445775 - PB1D10 SINE Alu -1 116 1 7 1593 318 279 139 0 chr4 132184394 132184516 -23445604 + ID_B1 SINE B4 86 224 0 7 1593 1114 173 69 5 chr4 132184519 132184722 -23445398 + B3 SINE B2 1 216 0 7 1593 971 201 43 9 chr4 132185455 132185666 -23444454 + ID_B1 SINE B4 1 218 -6 7 1593 753 196 202 0 chr4 132185709 132185882 -23444238 + ID_B1 SINE B4 11 218 -6 7 1593 254 151 57 0 chr4 132185835 132185888 -23444232 + PB1D10 SINE Alu 62 117 0 7 1593 3159 42 42 0 chr4 132185942 132186322 -23443798 - MTA_Mm LTR MaLR 0 396 1 7 1593 773 183 234 0 chr4 132186388 132186563 -23443557 - B3 SINE B2 0 216 1 7 1593 945 95 0 7 chr4 132186564 132186702 -23443418 + B1_Mur4 SINE Alu 13 149 -1 7 1593 1657 147 398 21 chr4 132186762 132187187 -23442933 - RMER4B LTR ERVK 0 585 1 7 1593 492 291 0 33 chr4 132187290 132187443 -23442677 - RSINE1 SINE B4 -2 163 16 7 1593 1321 93 0 67 chr4 132187634 132187842 -23442278 + B2_Mm2 SINE B2 2 195 0 7 1593 345 263 16 81 chr4 132188111 132188128 -23441992 - PB1D7 SINE Alu -1 119 104 7 1593 2189 87 14 78 chr4 132188128 132188476 -23441644 - ORR1A3 LTR MaLR 0 326 1 7 1593 420 254 21 8 chr4 132188476 132188582 -23441538 - B1F2 SINE Alu -17 103 4 7 1593 241 250 0 45 chr4 132188524 132188591 -23441529 + YREP_Mm Unknown Unknown 255 318 -1494 7 1593 1154 45 0 0 chr4 132188601 132188735 -23441385 + B1_Mus1 SINE Alu 2 135 -13 7 1593 234 0 0 0 chr4 132188737 132188763 -23441357 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1593 538 202 107 16 chr4 132189074 132189195 -23440925 - B1_Mur1 SINE Alu 0 149 18 7 1593 351 279 99 15 chr4 132189081 132189212 -23440908 - ID_B1 SINE B4 -5 219 78 7 1593 302 268 12 24 chr4 132189268 132189352 -23440768 - ID_B1 SINE B4 -67 157 75 7 1593 964 180 6 0 chr4 132189374 132189552 -23440568 - RMER19B LTR ERVK -140 762 584 7 1593 588 296 74 15 chr4 132189715 132189986 -23440134 + B4A SINE B4 2 288 -4 7 1593 900 174 0 20 chr4 132190180 132190332 -23439788 + B1_Mur2 SINE Alu 1 149 0 7 1593 946 80 64 21 chr4 132190347 132190488 -23439632 + B1_Mm SINE Alu 1 147 0 7 1593 261 0 0 0 chr4 132190630 132190659 -23439461 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1593 1089 73 0 0 chr4 132190659 132190796 -23439324 - B1_Mus1 SINE Alu -10 138 2 7 1593 432 208 0 0 chr4 132191134 132191230 -23438890 + GA-rich Low_complexity Low_complexity 2 97 0 7 1593 25 0 0 0 chr4 132191399 132191424 -23438696 + AT_rich Low_complexity Low_complexity 1 25 0 7 1593 637 189 0 0 chr4 132191721 132191827 -23438293 - PB1D10 SINE Alu -11 106 1 7 1593 221 292 40 27 chr4 132191828 132191902 -23438218 + MIRc SINE MIR 72 146 -122 7 1593 430 218 44 26 chr4 132191974 132192087 -23438033 - PB1D9 SINE Alu -1 119 5 7 1593 777 150 0 0 chr4 132192242 132192369 -23437751 + B1_Mur2 SINE Alu 3 129 -20 7 1593 201 176 0 0 chr4 132192369 132192403 -23437717 + (TA)n Simple_repeat Simple_repeat 1 34 0 7 1593 482 338 6 42 chr4 132192443 132192610 -23437510 - RSINE1 SINE B4 -2 163 3 7 1593 180 0 0 0 chr4 132192874 132192894 -23437226 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1593 372 297 102 0 chr4 132192911 132193029 -23437091 + ID_B1 SINE B4 95 224 0 7 1593 190 298 0 0 chr4 132193106 132193153 -23436967 - L2a LINE L2 -85 3341 3295 7 1593 364 316 216 4 chr4 132193266 132193756 -23436364 - L2a LINE L2 -265 3161 2568 7 1593 1648 42 0 0 chr4 132193903 132194094 -23436026 - B2_Mm1a SINE B2 0 193 3 7 1593 353 245 53 0 chr4 132194245 132194339 -23435781 + B1_Mur4 SINE Alu 50 148 -2 7 1593 225 0 0 0 chr4 132194366 132194391 -23435729 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 7 1593 261 252 54 108 chr4 132196662 132196686 -23433434 - ID_B1 SINE B4 -31 193 122 7 1593 264 278 66 11 chr4 132196686 132196777 -23433343 - PB1D10 SINE Alu -18 99 4 7 1593 261 252 54 108 chr4 132196777 132196791 -23433329 - ID_B1 SINE B4 -31 121 72 7 1593 629 207 54 60 chr4 132196805 132196954 -23433166 - B1_Mur3 SINE Alu 0 149 2 7 1593 679 197 7 52 chr4 132197083 132197238 -23432882 + B1_Mur3 SINE Alu 2 149 0 7 1593 1410 23 103 0 chr4 132197257 132197431 -23432689 - B2_Mm1a SINE B2 0 193 2 7 1593 1291 109 11 11 chr4 132197467 132197653 -23432467 + B2_Mm2 SINE B2 2 187 -8 7 1593 923 156 0 13 chr4 132197677 132197833 -23432287 - B3 SINE B2 -61 155 2 7 1593 486 207 72 0 chr4 132197998 132198109 -23432011 + PB1D9 SINE Alu 2 120 0 7 1593 1040 188 218 88 chr4 132198354 132198693 -23431427 - ORR1C2 LTR MaLR 0 384 2 7 1593 1017 121 7 20 chr4 132199557 132199709 -23430411 + B1_Mur4 SINE Alu 1 150 0 7 1593 359 231 57 9 chr4 132199775 132199880 -23430240 - ID_B1 SINE B4 -7 217 108 7 1593 445 238 207 20 chr4 132200725 132200875 -23429245 - B3A SINE B2 -20 178 1 7 1593 215 333 44 0 chr4 132200995 132201008 -23429112 + B1_Mus1 SINE Alu 28 146 -2 7 1593 333 263 0 59 chr4 132201008 132201109 -23429011 + ID_B1 SINE B4 127 221 -3 7 1593 611 246 69 15 chr4 132201184 132201386 -23428734 - B3 SINE B2 -2 214 2 7 1593 26 50 0 0 chr4 132201389 132201429 -23428691 + AT_rich Low_complexity Low_complexity 1 40 0 7 1593 830 38 0 0 chr4 132201722 132201828 -23428292 + B2_Mm2 SINE B2 2 107 -88 7 1593 527 319 33 16 chr4 132201997 132202179 -23427941 - B4A SINE B4 -100 192 8 7 1593 24 0 0 0 chr4 132202923 132202947 -23427173 + AT_rich Low_complexity Low_complexity 1 24 0 7 1593 379 147 40 0 chr4 132203472 132203547 -23426573 - ID_B1 SINE B4 -72 152 75 7 1593 351 0 0 0 chr4 132203964 132204003 -23426117 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 7 1593 358 290 36 36 chr4 132204031 132204142 -23425978 - PB1D10 SINE Alu -6 111 1 7 1593 488 234 19 0 chr4 132204446 132204553 -23425567 + PB1D10 SINE Alu 1 109 -8 7 1593 376 194 30 0 chr4 132204604 132204671 -23425449 - B1_Mur3 SINE Alu -80 69 1 7 1593 219 36 0 0 chr4 132204960 132204988 -23425132 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 7 1593 775 35 259 0 chr4 132204988 132205104 -23425016 - B1_Mus2 SINE Alu -1 146 1 7 1593 331 316 38 50 chr4 132205485 132205645 -23424475 - RLTR42-int LTR ERVK -4143 1379 1222 7 1593 248 252 142 18 chr4 132205681 132205694 -23424426 - B4 SINE B4 -81 211 86 7 1593 289 245 121 10 chr4 132205694 132205793 -23424327 - PB1D10 SINE Alu -39 110 1 7 1593 787 92 67 0 chr4 132206005 132206125 -23423995 - B1_Mus1 SINE Alu -16 132 5 7 1593 1697 168 157 7 chr4 132206730 132207143 -23422977 + RLTR28 LTR ERVL 28 502 -22 7 1593 819 141 44 0 chr4 132207209 132207344 -23422776 - B1_Mus2 SINE Alu -6 141 1 7 1593 423 239 124 0 chr4 132207619 132207732 -23422388 - B1_Mus2 SINE Alu -20 127 1 7 1593 519 17 0 0 chr4 132207794 132207854 -23422266 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1593 414 0 0 0 chr4 132207854 132207899 -23422221 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1593 586 211 16 0 chr4 132208822 132208945 -23421175 + RSINE1 SINE B4 14 138 -27 7 1593 465 222 216 0 chr4 132209234 132209419 -23420701 - Lx9 LINE L1 -6 7638 7414 7 1593 234 288 0 70 chr4 132209930 132210016 -23420104 + ID4_ SINE ID 3 82 -1 7 1593 544 252 0 0 chr4 132210349 132210464 -23419656 - PB1D7 SINE Alu -5 115 1 7 1593 22 0 0 0 chr4 132210870 132210892 -23419228 + AT_rich Low_complexity Low_complexity 1 22 0 7 1593 225 163 61 0 chr4 132210962 132211011 -23419109 + MER67C LTR ERV1 59 110 -601 7 1593 275 287 22 44 chr4 132212870 132212961 -23417159 - PB1D10 SINE Alu -27 90 2 7 1593 240 354 35 17 chr4 132213673 132213788 -23416332 - MER74B LTR ERVL -109 513 397 7 1593 1780 59 0 0 chr4 132213838 132214060 -23416060 - L1_Mus1 LINE L1 0 6567 6346 7 1593 521 189 121 0 chr4 132214236 132214368 -23415752 + MTD LTR MaLR 263 410 -9 7 1593 381 209 99 0 chr4 132214378 132214469 -23415651 + ID_B1 SINE B4 119 218 -6 7 1593 244 250 0 0 chr4 132214538 132214590 -23415530 - MER74B LTR ERVL -570 52 1 7 1593 253 226 123 38 chr4 132214814 132214920 -23415200 - PB1 SINE Alu -2 125 11 7 1593 260 301 9 80 chr4 132214954 132215066 -23415054 - PB1D10 SINE Alu -2 115 12 7 1593 636 80 0 0 chr4 132215491 132215591 -23414529 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1593 299 301 0 0 chr4 132215616 132215699 -23414421 - BC1_Mm scRNA scRNA -55 97 15 7 1593 780 169 6 69 chr4 132215952 132216111 -23414009 + B1_Mur3 SINE Alu 1 149 0 8 1593 26 0 0 0 chr4 132216774 132216800 -23413320 + AT_rich Low_complexity Low_complexity 1 26 0 8 1593 210 143 0 0 chr4 132216896 132216931 -23413189 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1593 487 261 34 34 chr4 132216934 132217081 -23413039 - B1_Mur3 SINE Alu -2 147 1 8 1593 315 257 55 9 chr4 132217555 132217665 -23412455 + MER2 DNA MER2_type 128 242 -103 8 1593 273 29 0 0 chr4 132218068 132218102 -23412018 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1593 1590 37 11 0 chr4 132218717 132218906 -23411214 - B2_Mm1a SINE B2 -1 192 2 8 1593 1119 107 0 0 chr4 132218991 132219140 -23410980 + B1_Mur4 SINE Alu 2 150 0 8 1593 30 27 0 0 chr4 132219140 132219177 -23410943 + AT_rich Low_complexity Low_complexity 1 37 0 8 1593 211 270 111 0 chr4 132219375 132219438 -23410682 - PB1D10 SINE Alu -21 96 27 8 1593 1533 38 32 0 chr4 132219448 132219634 -23410486 - B2_Mm2 SINE B2 -2 193 2 8 1593 293 243 14 14 chr4 132219693 132219764 -23410356 - ID4_ SINE ID -11 72 2 8 1593 351 0 0 0 chr4 132219961 132220000 -23410120 + (CATA)n Simple_repeat Simple_repeat 4 42 0 8 1593 1021 65 0 0 chr4 132220042 132220181 -23409939 - B1_Mus2 SINE Alu 0 147 9 8 1593 902 221 26 0 chr4 132220962 132221157 -23408963 + B3 SINE B2 15 214 -2 8 1593 443 219 171 32 chr4 132221179 132221302 -23408818 + B1_Mur1 SINE Alu 4 143 -6 8 1593 1160 40 0 69 chr4 132221303 132221462 -23408658 + B1_Mus1 SINE Alu 1 148 0 8 1593 182 232 183 0 chr4 132221811 132221893 -23408227 - MIR SINE MIR -89 173 77 8 1593 454 303 15 15 chr4 132221978 132222112 -23408008 - B1F SINE Alu -4 145 12 8 1593 474 244 33 8 chr4 132222266 132222386 -23407734 - ID_B1 SINE B4 -16 208 86 8 1593 534 258 48 12 chr4 132222585 132222750 -23407370 + L1MA7 LINE L1 6096 6266 -25 8 1593 697 204 8 0 chr4 132224365 132224497 -23405623 - B1_Mur3 SINE Alu -12 137 5 8 1593 180 176 0 0 chr4 132227685 132227719 -23402401 + (CATA)n Simple_repeat Simple_repeat 2 35 0 8 1593 940 119 35 0 chr4 132227972 132228115 -23402005 - B1_Mus1 SINE Alu 0 148 1 8 1593 472 267 108 0 chr4 132228293 132228469 -23401651 - ID_B1 SINE B4 -28 196 2 8 1593 525 220 30 45 chr4 132229218 132229351 -23400769 - ID_B1 SINE B4 -7 217 87 8 1593 210 143 0 0 chr4 132229512 132229547 -23400573 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1593 607 67 11 22 chr4 132229550 132229642 -23400478 + B1_Mm SINE Alu 57 147 0 8 1593 931 51 124 0 chr4 132229647 132229784 -23400336 - B2_Mm1t SINE B2 -39 154 1 8 1593 49 0 0 0 chr4 132229860 132229909 -23400211 + AT_rich Low_complexity Low_complexity 1 49 0 8 1593 573 271 83 29 chr4 132229933 132230138 -23399982 + B3 SINE B2 1 216 0 8 1593 266 253 149 0 chr4 132230485 132230572 -23399548 - PB1D10 SINE Alu -6 111 12 8 1593 823 184 184 0 chr4 132230723 132230897 -23399223 - B3 SINE B2 -10 206 1 8 1593 250 73 98 0 chr4 132231309 132231350 -23398770 + L1_Mus1 LINE L1 6504 6548 -19 8 1593 1225 41 0 7 chr4 132231350 132231498 -23398622 + B1_Mus2 SINE Alu 1 147 0 8 1593 650 152 0 22 chr4 132231498 132231633 -23398487 + GA-rich Low_complexity Low_complexity 3 134 0 8 1593 265 117 33 0 chr4 132232228 132232288 -23397832 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1593 370 279 66 118 chr4 132232305 132232318 -23397802 - B4A SINE B4 -1 291 284 8 1593 1011 84 11 6 chr4 132232318 132232497 -23397623 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1593 370 279 66 118 chr4 132232497 132232771 -23397349 - B4A SINE B4 -9 283 19 8 1593 395 301 9 0 chr4 132232973 132233090 -23397030 - ID_B1 SINE B4 -21 203 90 8 1593 350 230 38 48 chr4 132233107 132233212 -23396908 + RSINE1 SINE B4 2 105 -60 8 1593 389 267 134 22 chr4 132233319 132233453 -23396667 - B3A SINE B2 -48 150 2 8 1593 239 269 106 72 chr4 132233652 132233860 -23396260 - RLTR11A LTR ERVK -202 326 112 8 1593 269 200 161 23 chr4 132234197 132234284 -23395836 + L1MA8 LINE L1 5866 5964 -327 8 1593 254 296 193 0 chr4 132234575 132234663 -23395457 + PB1D10 SINE Alu 6 110 -7 8 1593 991 113 135 12 chr4 132234671 132234841 -23395279 + B2_Mm2 SINE B2 2 192 -3 8 1593 312 143 0 0 chr4 132234841 132234897 -23395223 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 8 1593 524 230 143 7 chr4 132234902 132235042 -23395078 + RSINE1 SINE B4 5 163 -2 8 1593 244 204 0 0 chr4 132235262 132235306 -23394814 + B1F2 SINE Alu 2 45 -104 8 1593 21 36 0 0 chr4 132235563 132235591 -23394529 + AT_rich Low_complexity Low_complexity 1 28 0 8 1593 618 220 106 40 chr4 132235601 132235828 -23394292 + B4A SINE B4 10 251 -41 8 1593 278 318 27 36 chr4 132235982 132236093 -23394027 - PB1D9 SINE Alu -6 114 5 8 1593 589 263 31 43 chr4 132236001 132236164 -23393956 - ID_B1 SINE B4 -54 170 10 8 1593 405 278 31 100 chr4 132237553 132237713 -23392407 + B4 SINE B4 75 223 -69 8 1593 831 179 7 0 chr4 132237574 132237714 -23392406 + B1_Mur4 SINE Alu 9 149 -1 8 1593 417 278 69 43 chr4 132237873 132238061 -23392059 - B3A SINE B2 -2 193 1 8 1593 249 33 0 0 chr4 132238299 132238329 -23391791 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1593 1611 26 11 0 chr4 132238333 132238524 -23391596 - B2_Mm1a SINE B2 0 193 1 8 1593 677 243 35 0 chr4 132238953 132239126 -23390994 - B3A SINE B2 -18 180 2 8 1593 226 237 17 0 chr4 132239126 132239185 -23390935 - L1MC2 LINE L1 -12 6332 6273 8 1593 971 267 234 49 chr4 132239584 132240032 -23390088 - L1MC3 LINE L1 -78 7707 7146 8 1593 478 163 152 0 chr4 132240032 132240124 -23389996 - PB1D10 SINE Alu -8 109 4 8 1593 971 267 234 49 chr4 132240124 132240323 -23389797 - L1MC3 LINE L1 -640 7145 6902 8 1593 736 182 79 14 chr4 132240323 132240462 -23389658 - B1_Mus1 SINE Alu 0 148 1 8 1593 971 267 234 49 chr4 132240462 132240645 -23389475 - L1MC3 LINE L1 -884 6901 6722 8 1593 1523 63 5 0 chr4 132240791 132240982 -23389138 - B2_Mm1t SINE B2 -1 192 1 8 1593 1130 87 68 17 chr4 132240992 132241168 -23388952 - B2_Mm2 SINE B2 -8 187 3 8 1593 372 262 67 97 chr4 132241243 132241408 -23388712 + RSINE1 SINE B4 2 161 -4 8 1593 258 79 0 0 chr4 132241409 132241447 -23388673 - ORR1C2 LTR MaLR -346 38 1 8 1593 1269 66 28 0 chr4 132241528 132241710 -23388410 - B2_Mm2 SINE B2 -7 188 2 8 1593 424 245 179 41 chr4 132241711 132241765 -23388355 - L1MC3 LINE L1 -1096 6689 6636 8 1593 2994 58 42 3 chr4 132241765 132242146 -23387974 - MTA_Mm LTR MaLR 0 396 1 8 1593 424 245 179 41 chr4 132242146 132242287 -23387833 - L1MC3 LINE L1 -1150 6635 6467 8 1593 492 304 34 0 chr4 132242315 132242463 -23387657 - RSINE1 SINE B4 -10 155 3 8 1593 771 65 0 0 chr4 132242759 132242867 -23387253 + B1_Mus2 SINE Alu 40 147 0 8 1593 673 186 96 15 chr4 132243012 132243148 -23386972 - B1_Mus2 SINE Alu 0 147 1 8 1593 187 282 165 0 chr4 132243161 132243246 -23386874 - L2a LINE L2 -40 3386 3288 8 1593 284 236 90 45 chr4 132243503 132243525 -23386595 - B1F SINE Alu 0 149 34 8 1593 303 264 45 22 chr4 132243525 132243614 -23386506 - ID_B1 SINE B4 -19 205 115 8 1593 571 277 25 13 chr4 132244726 132244883 -23385237 - RSINE1 SINE B4 -4 161 3 8 1593 940 178 102 11 chr4 132245296 132245483 -23384637 - B3 SINE B2 -9 207 4 8 1593 242 284 22 59 chr4 132245944 132246079 -23384041 + L2a LINE L2 3297 3426 0 8 1593 761 216 0 0 chr4 132246137 132246276 -23383844 - B1_Mur4 SINE Alu -6 144 6 8 1593 390 215 74 1 chr4 132246562 132246699 -23383421 - B1_Mur2 SINE Alu 0 150 3 8 1593 3363 18 39 0 chr4 132246828 132247209 -23382911 - MTA_Mm LTR MaLR 0 396 1 8 1593 9305 35 2 1 chr4 132247210 132248306 -23381814 - MTA_Mm-int LTR MaLR -1 1097 1 8 1593 3463 30 2 0 chr4 132248306 132248701 -23381419 - MTA_Mm LTR MaLR 0 396 1 8 1593 901 202 25 133 chr4 132249630 132249668 -23380452 + B3 SINE B2 2 39 -177 8 1593 745 85 246 0 chr4 132249668 132249786 -23380334 + B1_Mus2 SINE Alu 1 147 0 8 1593 901 202 25 133 chr4 132249786 132249987 -23380133 + B3 SINE B2 40 215 -1 8 1593 550 226 138 37 chr4 132250048 132250236 -23379884 - B3 SINE B2 -7 209 3 8 1594 603 205 84 45 chr4 132251718 132251897 -23378223 - B3 SINE B2 -8 208 23 8 1594 230 267 67 13 chr4 132251986 132252085 -23378035 - B1F SINE Alu 0 117 6 8 1594 593 292 145 31 chr4 132252089 132252407 -23377713 - L1MB4 LINE L1 -119 6061 5708 8 1594 227 288 162 0 chr4 132252375 132252486 -23377634 - L1M5 LINE L1 -511 5668 5540 8 1594 378 215 43 0 chr4 132252561 132252654 -23377466 - B1_Mur3 SINE Alu -11 138 42 8 1594 246 189 19 19 chr4 132252678 132252732 -23377388 - L1MB4 LINE L1 -702 5469 5416 8 1594 1191 54 0 0 chr4 132252877 132253024 -23377096 - B1_Mm SINE Alu 0 147 1 8 1594 754 260 37 46 chr4 132253135 132253353 -23376767 + B3 SINE B2 1 216 0 8 1594 683 210 193 0 chr4 132253571 132253747 -23376373 - B3 SINE B2 -6 210 1 8 1594 1095 96 0 0 chr4 132254001 132254147 -23375973 - B1_Mus2 SINE Alu 0 147 2 8 1594 516 262 69 8 chr4 132254150 132254396 -23375724 - L1MB4 LINE L1 -2727 3419 3159 8 1594 243 301 63 21 chr4 132254459 132254554 -23375566 - PB1D10 SINE Alu -5 112 14 8 1594 183 80 0 0 chr4 132254563 132254588 -23375532 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 8 1594 536 206 61 0 chr4 132254627 132254758 -23375362 - B1_Mur1 SINE Alu -5 144 6 8 1594 794 267 15 15 chr4 132255137 132255342 -23374778 + B3 SINE B2 1 205 -11 8 1594 396 182 0 0 chr4 132255368 132255434 -23374686 - ID4 SINE ID -16 67 2 8 1594 523 246 35 9 chr4 132255579 132255694 -23374426 + RSINE1 SINE B4 4 121 -44 8 1594 553 177 43 17 chr4 132255926 132256041 -23374079 - PB1D7 SINE Alu 0 120 3 8 1594 714 145 127 22 chr4 132256592 132256726 -23373394 - B1_Mus1 SINE Alu 0 148 1 9 1594 21 0 0 0 chr4 132256910 132256931 -23373189 + AT_rich Low_complexity Low_complexity 1 21 0 9 1594 539 218 250 11 chr4 132257295 132257471 -23372649 - ID_B1 SINE B4 -3 221 4 9 1594 1173 41 14 0 chr4 132257698 132257843 -23372277 + B1_Mur4 SINE Alu 2 148 -2 9 1594 22 0 0 0 chr4 132257857 132257879 -23372241 + AT_rich Low_complexity Low_complexity 1 22 0 9 1594 678 187 43 7 chr4 132257907 132258047 -23372073 - B1_Mur1 SINE Alu 0 149 5 9 1594 622 234 89 11 chr4 132258066 132258256 -23371864 - B3 SINE B2 -4 212 8 9 1594 183 114 0 0 chr4 132258285 132258320 -23371800 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 9 1594 257 303 99 20 chr4 132258647 132258748 -23371372 - PB1D10 SINE Alu -7 110 2 9 1594 198 356 61 14 chr4 132259414 132259562 -23370558 - MER5B DNA MER1_type 0 178 24 9 1594 191 103 0 25 chr4 132259753 132259793 -23370327 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1594 868 171 64 37 chr4 132259796 132259984 -23370136 - B2_Mm2 SINE B2 -2 193 1 9 1594 636 216 0 0 chr4 132260077 132260193 -23369927 + B1_Mus1 SINE Alu 1 116 -32 9 1594 584 230 64 32 chr4 132260928 132261085 -23369035 - RSINE1 SINE B4 0 165 4 9 1594 759 182 19 25 chr4 132261111 132261269 -23368851 + B2_Mm2 SINE B2 4 160 -35 9 1594 526 135 165 35 chr4 132261448 132261563 -23368557 - B1_Mus2 SINE Alu 0 147 18 9 1594 669 181 6 97 chr4 132261814 132261979 -23368141 - B1_Mur4 SINE Alu 0 150 1 9 1594 232 339 35 18 chr4 132262045 132262070 -23368050 - B1F SINE Alu 0 149 125 9 1594 832 68 356 0 chr4 132262070 132262202 -23367918 + B2_Mm2 SINE B2 2 180 -15 9 1594 354 45 0 0 chr4 132262202 132262246 -23367874 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1594 232 339 35 18 chr4 132262246 132262333 -23367787 - B1F SINE Alu -25 124 35 9 1594 297 0 0 0 chr4 132262336 132262369 -23367751 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1594 256 368 20 27 chr4 132262576 132262591 -23367529 + B1_Mus1 SINE Alu 2 148 0 9 1594 490 277 8 23 chr4 132262591 132262724 -23367396 + ID_B1 SINE B4 94 224 0 9 1594 890 252 39 0 chr4 132263276 132263482 -23366638 + B3 SINE B2 3 216 0 9 1594 21 0 0 0 chr4 132263482 132263503 -23366617 + AT_rich Low_complexity Low_complexity 1 21 0 9 1594 1183 54 14 0 chr4 132263513 132263661 -23366459 + B1_Mur4 SINE Alu 1 150 0 9 1594 1622 27 21 0 chr4 132263745 132263933 -23366187 - B2_Mm1a SINE B2 0 193 2 9 1594 226 200 56 28 chr4 132264011 132264083 -23366037 - MTEb LTR MaLR 0 379 306 9 1594 207 0 0 0 chr4 132264323 132264346 -23365774 + (TTGG)n Simple_repeat Simple_repeat 1 23 0 9 1594 1196 218 70 10 chr4 132265492 132265793 -23364327 - MTEb LTR MaLR -39 340 22 9 1594 245 185 31 49 chr4 132266071 132266159 -23363961 + B1_Mus2 SINE Alu 30 141 -6 9 1594 180 0 0 0 chr4 132266176 132266196 -23363924 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 9 1594 195 129 0 0 chr4 132266203 132266234 -23363886 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1594 230 220 0 106 chr4 132266247 132266313 -23363807 + MT2B LTR ERVL 152 210 -391 9 1594 537 246 35 49 chr4 132266260 132266409 -23363711 + ID_B1 SINE B4 79 228 -64 9 1594 1190 122 61 0 chr4 132266409 132266590 -23363530 + B2_Mm1t SINE B2 1 192 -1 9 1594 214 327 60 84 chr4 132266590 132266608 -23363512 + B4A SINE B4 229 246 -46 9 1594 374 185 12 0 chr4 132266608 132266689 -23363431 + GA-rich Low_complexity Low_complexity 1 82 0 9 1594 920 117 159 6 chr4 132266720 132266883 -23363237 + B2_Mm2 SINE B2 1 188 -7 9 1594 291 54 0 0 chr4 132267076 132267113 -23363007 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 9 1594 417 200 0 0 chr4 132267339 132267409 -23362711 + B3A SINE B2 6 75 -123 9 1594 614 222 32 0 chr4 132267486 132267612 -23362508 + B1_Mus2 SINE Alu 1 130 -17 9 1594 202 135 81 0 chr4 132267616 132267653 -23362467 + polypurine Low_complexity Low_complexity 1 40 0 9 1594 892 203 80 0 chr4 132268221 132268408 -23361712 + B3 SINE B2 6 207 -9 9 1594 1130 58 0 0 chr4 132268443 132268582 -23361538 + B1_Mus1 SINE Alu 1 139 -9 9 1594 573 221 47 0 chr4 132269056 132269183 -23360937 - ID_B1 SINE B4 -6 218 86 9 1594 534 196 18 0 chr4 132269859 132269971 -23360149 + B1_Mur2 SINE Alu 36 149 0 9 1594 395 221 106 135 chr4 132270167 132270308 -23359812 + B3A SINE B2 54 190 -8 9 1594 487 306 77 11 chr4 132271248 132271501 -23358619 + B4A SINE B4 16 288 -4 9 1594 261 0 0 0 chr4 132271818 132271847 -23358273 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1594 1640 26 16 0 chr4 132271898 132272087 -23358033 + B2_Mm1a SINE B2 2 193 0 9 1594 23 0 0 0 chr4 132272096 132272119 -23358001 + AT_rich Low_complexity Low_complexity 1 23 0 9 1594 225 0 0 0 chr4 132272142 132272167 -23357953 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1594 243 0 0 0 chr4 132272187 132272214 -23357906 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1594 8155 46 0 0 chr4 132272216 132273291 -23356829 - L1Md_T LINE L1 0 6582 5508 9 1594 433 245 81 13 chr4 132273316 132273465 -23356655 - RSINE1 SINE B4 -2 163 5 9 1594 180 85 85 0 chr4 132273793 132273840 -23356280 + T-rich Low_complexity Low_complexity 5 55 0 9 1594 311 132 16 35 chr4 132273853 132273920 -23356200 - B2_Mm2 SINE B2 -82 116 46 9 1594 1208 105 41 0 chr4 132273966 132274138 -23355982 - B2_Mm1t SINE B2 -14 179 1 9 1594 563 161 32 0 chr4 132274256 132274349 -23355771 + B1_Mus1 SINE Alu 1 96 -52 9 1594 801 229 77 10 chr4 132275354 132275548 -23354572 + ID_B1 SINE B4 5 211 -13 9 1594 551 206 45 8 chr4 132275749 132275881 -23354239 + ID_B1 SINE B4 49 185 -39 9 1594 836 18 254 0 chr4 132275998 132276112 -23354008 + B1_Mus2 SINE Alu 5 147 0 9 1594 1370 66 49 11 chr4 132276129 132276313 -23353807 + B2_Mm2 SINE B2 1 191 -4 9 1594 251 241 35 0 chr4 132276322 132276380 -23353740 + PB1D9 SINE Alu 51 110 -10 9 1594 379 234 64 0 chr4 132276832 132276926 -23353194 - PB1D7 SINE Alu -10 110 11 9 1594 231 133 22 0 chr4 132278571 132278616 -23351504 + T-rich Low_complexity Low_complexity 2 47 0 9 1594 303 49 0 0 chr4 132279372 132279413 -23350707 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 9 1594 664 241 80 6 chr4 132279466 132279641 -23350479 + B3A SINE B2 8 195 -3 9 1594 835 201 75 30 chr4 132281269 132281665 -23348455 - RLTR20B1 LTR ERVK -48 486 1 9 1594 28 22 0 22 chr4 132281823 132281848 -23348272 + AT_rich Low_complexity Low_complexity 1 25 0 9 1594 1179 76 0 0 chr4 132281848 132281993 -23348127 + B1_Mus2 SINE Alu 2 146 -1 9 1594 28 22 0 22 chr4 132281993 132282013 -23348107 + AT_rich Low_complexity Low_complexity 1 20 0 9 1594 369 193 84 0 chr4 132282018 132282101 -23348019 - ID_B1 SINE B4 -4 220 131 9 1594 207 232 0 0 chr4 132284631 132284687 -23345433 + A-rich Low_complexity Low_complexity 1 56 0 9 1594 856 176 0 0 chr4 132285282 132285418 -23344702 - B1_Mus1 SINE Alu -11 137 2 9 1594 1184 69 7 0 chr4 132286145 132286290 -23343830 + B1_Mus2 SINE Alu 2 147 0 9 1594 498 124 28 19 chr4 132286293 132286400 -23343720 + A-rich Low_complexity Low_complexity 3 110 0 9 1594 311 260 0 76 chr4 132286418 132286497 -23343623 + B4A SINE B4 218 290 -2 9 1594 366 216 89 40 chr4 132287066 132287167 -23342953 + MIRb SINE MIR 47 152 -116 9 1594 584 195 106 0 chr4 132287286 132287409 -23342711 + B3A SINE B2 1 136 -62 9 1594 1028 44 89 0 chr4 132288649 132288784 -23341336 - B1_Mus2 SINE Alu 0 147 1 9 1594 249 335 90 40 chr4 132288971 132289148 -23340972 + Charlie16a DNA MER1_type 52 237 -105 9 1594 181 283 0 21 chr4 132289813 132289860 -23340260 - MIRm SINE MIR -117 159 114 9 1594 225 137 0 73 chr4 132290278 132290333 -23339787 + G-rich Low_complexity Low_complexity 5 55 0 9 1594 435 38 0 0 chr4 132290667 132290720 -23339400 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 9 1594 2006 112 63 12 chr4 132290788 132291122 -23338998 + RLTR15 LTR ERVK 1 351 -8 9 1594 881 268 11 0 chr4 132291129 132291319 -23338801 - B3A SINE B2 0 198 7 9 1594 341 167 0 16 chr4 132291402 132291463 -23338657 + B1F SINE Alu 1 60 -89 9 1594 606 254 129 5 chr4 132291469 132291655 -23338465 + B3 SINE B2 2 210 -6 9 1594 1157 87 62 0 chr4 132291679 132291840 -23338280 + B2_Mm2 SINE B2 2 172 -23 9 1594 239 0 32 0 chr4 132292157 132292188 -23337932 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 9 1594 201 239 22 0 chr4 132292336 132292382 -23337738 + CT-rich Low_complexity Low_complexity 4 50 0 9 1594 235 316 92 0 chr4 132292384 132292460 -23337660 - ID4 SINE ID 0 83 1 9 1594 500 211 56 63 chr4 132292485 132292627 -23337493 - B1F1 SINE Alu -8 141 1 9 1594 230 332 92 39 chr4 132292631 132292808 -23337312 + L2a LINE L2 3190 3425 -1 9 1594 932 121 0 21 chr4 132293179 132293323 -23336797 + ORR1B1 LTR MaLR 41 181 -213 9 1594 1527 154 117 17 chr4 132293323 132293621 -23336499 + IAPEY3_LTR LTR ERVK 5 332 0 9 1594 1323 95 15 20 chr4 132293626 132293830 -23336290 + ORR1A4 LTR MaLR 127 329 0 9 1594 517 185 0 11 chr4 132294585 132294678 -23335442 + B1_Mur2 SINE Alu 1 92 -57 9 1594 393 58 0 0 chr4 132294680 132294732 -23335388 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1594 958 101 9 6 chr4 132294735 132294893 -23335227 - B2_Mm2 SINE B2 -35 158 3 9 1594 202 254 92 66 chr4 132294927 132295003 -23335117 + MIR SINE MIR 64 141 -67 9 1594 527 205 108 16 chr4 132295828 132295957 -23334163 + MIR SINE MIR 16 156 -106 9 1594 455 264 64 57 chr4 132295968 132296125 -23333995 + LTR33 LTR ERVL 32 189 -326 1 1594 520 254 85 0 chr4 132296154 132296284 -23333836 + MER20 DNA MER1_type 2 142 -77 1 1594 2433 164 17 121 chr4 132296286 132296331 -23333789 + RMER4A LTR ERVK 1 46 -420 1 1594 805 59 244 0 chr4 132296331 132296450 -23333670 + B1_Mus1 SINE Alu 1 148 0 1 1594 2433 164 17 121 chr4 132296450 132296924 -23333196 + RMER4A LTR ERVK 47 466 0 1 1594 396 255 209 37 chr4 132297102 132297293 -23332827 + MIR SINE MIR 17 240 -22 1 1594 388 243 9 35 chr4 132297722 132297837 -23332283 - PB1D10 SINE Alu -5 112 1 1 1594 198 214 0 23 chr4 132297849 132297892 -23332228 + MIRb SINE MIR 212 253 -15 1 1594 211 255 21 0 chr4 132297861 132297908 -23332212 + L2b LINE L2 3326 3373 -2 1 1594 706 195 0 144 chr4 132297928 132298040 -23332080 + B1_Mur3 SINE Alu 1 96 -53 1 1594 1543 47 0 25 chr4 132298040 132298238 -23331882 - B2_Mm1t SINE B2 0 193 1 1 1594 706 195 0 144 chr4 132298238 132298299 -23331821 + B1_Mur3 SINE Alu 97 149 0 1 1594 456 123 0 0 chr4 132298299 132298372 -23331748 + (GGA)n Simple_repeat Simple_repeat 3 75 0 1 1594 21 71 0 0 chr4 132298380 132298422 -23331698 + AT_rich Low_complexity Low_complexity 1 42 0 1 1594 222 37 0 0 chr4 132298437 132298464 -23331656 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1 1594 240 284 48 0 chr4 132299121 132299190 -23330930 + MIR SINE MIR 91 169 -99 1 1594 392 0 21 0 chr4 132299440 132299488 -23330632 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1594 671 274 102 61 chr4 132299519 132299764 -23330356 - B4A SINE B4 -14 278 24 1 1594 299 327 72 24 chr4 132300120 132300286 -23329834 + MIR SINE MIR 86 259 -3 1 1594 363 285 52 21 chr4 132301227 132301390 -23328730 + MIR SINE MIR 43 205 -63 1 1594 889 137 0 41 chr4 132301667 132301812 -23328308 + B1_Mus1 SINE Alu 2 140 -8 1 1594 1284 86 32 11 chr4 132302729 132302918 -23327202 - B2_Mm1t SINE B2 0 193 1 1 1594 243 0 0 0 chr4 132303171 132303198 -23326922 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1594 405 264 65 24 chr4 132303489 132303613 -23326507 - PB1D10 SINE Alu -20 129 1 1 1594 192 315 95 32 chr4 132304027 132304122 -23325998 - MIRb SINE MIR -89 179 79 1 1594 216 0 0 0 chr4 132304253 132304277 -23325843 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 1594 1505 32 0 70 chr4 132304281 132304480 -23325640 - B2_Mm1a SINE B2 -7 186 2 1 1594 579 61 53 0 chr4 132304949 132305063 -23325057 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 1594 233 220 203 0 chr4 132305063 132305122 -23324998 - ID4 SINE ID -11 72 2 1 1594 263 314 131 19 chr4 132305131 132305238 -23324882 - PB1 SINE Alu 0 127 9 1 1594 189 0 0 0 chr4 132305260 132305281 -23324839 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1594 853 182 15 0 chr4 132305305 132305442 -23324678 - B1_Mur4 SINE Alu -8 142 4 1 1594 273 172 0 0 chr4 132305451 132305515 -23324605 + T-rich Low_complexity Low_complexity 1 64 0 1 1594 923 65 8 31 chr4 132305520 132305648 -23324472 - B1_Mus2 SINE Alu 0 147 23 1 1594 1075 66 60 0 chr4 132305770 132305921 -23324199 + B2_Mm2 SINE B2 31 190 -5 1 1594 393 309 85 18 chr4 132305933 132306098 -23324022 + B4A SINE B4 113 288 -4 1 1594 1200 47 0 39 chr4 132306141 132306295 -23323825 + B1_Mus1 SINE Alu 1 148 0 1 1594 483 276 44 7 chr4 132306416 132306551 -23323569 + B1F1 SINE Alu 9 148 -1 1 1594 595 288 12 6 chr4 132307018 132307179 -23322941 + RSINE1 SINE B4 4 165 0 1 1594 1055 114 0 13 chr4 132307243 132307394 -23322726 + B1_Mur4 SINE Alu 1 149 -1 1 1594 277 212 43 86 chr4 132307558 132307580 -23322540 - RLTR25A LTR ERVK -490 613 590 1 1594 1109 73 128 0 chr4 132307580 132307744 -23322376 + B2_Mm1t SINE B2 2 186 -7 1 1594 277 212 43 86 chr4 132307744 132307814 -23322306 - RLTR25A LTR ERVK -514 589 525 1 1594 861 54 0 9 chr4 132307750 132307863 -23322257 - B1_Mus1 SINE Alu -36 112 1 1 1594 426 20 0 0 chr4 132307991 132308042 -23322078 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1594 512 240 71 47 chr4 132308042 132308169 -23321951 - RSINE1 SINE B4 -24 141 12 1 1594 389 244 121 9 chr4 132308170 132308286 -23321834 - RSINE1 SINE B4 -34 131 3 1 1594 711 277 19 24 chr4 132308360 132308571 -23321549 - B3 SINE B2 -6 210 1 1 1594 184 283 35 78 chr4 132308735 132308850 -23321270 + MIRb SINE MIR 38 147 -121 1 1594 551 312 0 34 chr4 132309185 132309334 -23320786 + RSINE1 SINE B4 8 151 -14 1 1594 186 43 0 0 chr4 132309341 132309364 -23320756 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1594 1073 130 0 0 chr4 132309428 132309574 -23320546 + B1_Mur4 SINE Alu 5 150 0 1 1594 261 0 0 0 chr4 132310063 132310092 -23320028 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1594 1194 62 0 0 chr4 132310092 132310236 -23319884 - B1_Mm SINE Alu -3 144 1 1 1594 509 242 31 39 chr4 132310243 132310372 -23319748 - B3A SINE B2 -1 197 70 1 1594 1249 86 103 0 chr4 132310402 132310576 -23319544 - B2_Mm2 SINE B2 -2 193 2 1 1594 1343 90 11 0 chr4 132310585 132310773 -23319347 - B2_Mm1t SINE B2 0 193 4 1 1594 326 296 30 10 chr4 132311035 132311134 -23318986 + PB1 SINE Alu 12 112 -15 1 1594 548 189 15 109 chr4 132311151 132311288 -23318832 + RSINE1 SINE B4 7 130 -35 1 1594 305 125 0 18 chr4 132311289 132311346 -23318774 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1594 274 225 242 38 chr4 132311516 132311673 -23318447 + MIRb SINE MIR 22 210 -52 1 1594 1050 150 118 10 chr4 132311676 132311871 -23318249 + B3 SINE B2 1 216 0 1 1594 717 225 14 27 chr4 132311961 132312107 -23318013 + B1_Mur1 SINE Alu 6 149 0 1 1594 299 262 0 16 chr4 132312374 132312436 -23317684 - RSINE1 SINE B4 -45 120 60 1 1594 505 268 42 35 chr4 132313463 132313606 -23316514 + ID_B1 SINE B4 79 222 -2 1 1594 708 238 6 9 chr4 132314222 132314390 -23315730 + B3 SINE B2 1 166 -29 1 1594 261 211 0 0 chr4 132314391 132314448 -23315672 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1594 746 140 32 95 chr4 132314496 132314654 -23315466 - B1_Mur3 SINE Alu 0 149 2 1 1594 852 169 193 17 chr4 132314677 132314858 -23315262 - B3 SINE B2 0 216 4 1 1594 288 77 0 0 chr4 132314862 132314901 -23315219 + (TCC)n Simple_repeat Simple_repeat 3 41 0 1 1594 207 0 0 0 chr4 132314914 132314937 -23315183 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1594 1414 30 0 6 chr4 132314937 132315099 -23315021 - B2_Mm1a SINE B2 -31 162 1 1 1594 198 0 0 0 chr4 132315102 132315124 -23314996 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 1594 1134 44 0 0 chr4 132315124 132315259 -23314861 - B2_Mm2 SINE B2 -59 136 2 1 1594 374 313 106 77 chr4 132315484 132315719 -23314401 - RLTR18 LTR ERVK -4 612 371 1 1594 1180 21 28 0 chr4 132315772 132315914 -23314206 + B1_Mus2 SINE Alu 2 147 0 1 1594 1216 68 0 0 chr4 132315937 132316085 -23314035 + B1_Mus1 SINE Alu 1 148 0 1 1594 360 119 119 0 chr4 132316169 132316236 -23313884 + ID_B1 SINE B4 146 220 -4 1 1594 253 156 62 49 chr4 132316315 132316396 -23313724 + GA-rich Low_complexity Low_complexity 3 84 0 1 1594 627 257 42 0 chr4 132316990 132317134 -23312986 - B3A SINE B2 -47 151 2 1 1594 288 0 0 0 chr4 132317595 132317627 -23312493 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1594 264 295 20 80 chr4 132317729 132318028 -23312092 + RMER17A2 LTR ERVK 293 573 -333 1 1594 268 77 19 19 chr4 132318054 132318107 -23312013 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 1 1594 1226 20 7 40 chr4 132318137 132318289 -23311831 - B1_Mus2 SINE Alu 0 147 1 1 1594 314 255 139 19 chr4 132318438 132318546 -23311574 + PB1D10 SINE Alu 1 121 -28 1 1594 260 275 62 12 chr4 132318837 132318918 -23311202 - L2a LINE L2 -6 3420 3336 1 1594 201 293 0 39 chr4 132318991 132319069 -23311051 + L3 LINE CR1 890 964 -3525 1 1594 898 198 98 36 chr4 132319088 132319282 -23310838 + B3 SINE B2 5 210 -6 1 1594 1231 75 0 0 chr4 132319288 132319435 -23310685 + B1_Mus2 SINE Alu 1 147 0 1 1594 219 45 67 22 chr4 132319442 132319487 -23310633 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1594 862 192 7 7 chr4 132319495 132319642 -23310478 - B1_Mur4 SINE Alu -2 148 2 1 1594 232 263 78 29 chr4 132319642 132319744 -23310376 + L2c LINE L2 3276 3382 -5 1 1594 193 275 96 32 chr4 132319742 132319836 -23310284 - L3 LINE CR1 -1661 2828 2729 1 1594 1066 69 21 0 chr4 132319944 132320088 -23310032 + B2_Mm2 SINE B2 48 194 -1 1 1594 960 73 0 0 chr4 132320169 132320292 -23309828 + B1_Mus2 SINE Alu 25 147 0 1 1594 354 240 73 88 chr4 132320170 132320307 -23309813 + B4A SINE B4 111 245 -47 1 1594 432 97 0 0 chr4 132320307 132320369 -23309751 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 1 1594 261 289 81 94 chr4 132320384 132320432 -23309688 - MT2B LTR ERVL -266 335 189 1 1594 722 109 0 0 chr4 132320432 132320533 -23309587 - B1_Mus1 SINE Alu -22 126 26 1 1594 222 37 0 0 chr4 132320537 132320564 -23309556 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1594 3905 69 14 2 chr4 132320592 132321086 -23309034 - L1_Mus1 LINE L1 0 6567 6068 1 1594 215 292 0 20 chr4 132321325 132321372 -23308748 + PB1 SINE Alu 9 54 -73 1 1594 477 222 97 185 chr4 132321372 132321408 -23308712 + B3A SINE B2 1 39 -159 1 1594 904 154 33 44 chr4 132321408 132321591 -23308529 + B2_Mm2 SINE B2 1 181 -14 1 1594 477 222 97 185 chr4 132321591 132321770 -23308350 + B3A SINE B2 40 197 -1 1 1594 332 248 13 19 chr4 132321914 132322070 -23308050 + (CATA)n Simple_repeat Simple_repeat 4 158 0 1 1594 360 216 18 24 chr4 132322057 132322223 -23307897 + (CATATA)n Simple_repeat Simple_repeat 4 168 0 1 1594 320 279 0 0 chr4 132322224 132322303 -23307817 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1594 306 301 60 8 chr4 132322398 132322532 -23307588 - B4A SINE B4 -139 153 13 1 1594 343 306 39 39 chr4 132322550 132322730 -23307390 + B3A SINE B2 2 181 -17 1 1594 973 158 0 0 chr4 132322922 132323068 -23307052 - B1_Mur4 SINE Alu 0 150 5 1 1594 246 226 0 0 chr4 132323128 132323181 -23306939 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1594 318 287 0 0 chr4 132323203 132323290 -23306830 + RLTR24 LTR ERV1 1 87 -442 1 1594 1252 48 0 0 chr4 132323500 132323647 -23306473 - B1_Mus1 SINE Alu 0 148 2 1 1594 881 102 47 0 chr4 132323794 132323921 -23306199 - B2_Mm2 SINE B2 -25 170 38 1 1594 293 260 52 0 chr4 132325082 132325159 -23304961 - B1_Mm SINE Alu -22 125 45 1 1594 294 231 65 152 chr4 132325121 132325155 -23304965 - B4 SINE B4 -123 169 2 1 1594 1269 33 0 0 chr4 132325155 132325305 -23304815 - B2_Mm2 SINE B2 -44 151 2 1 1594 753 177 41 28 chr4 132325677 132325705 -23304415 - B1_Mur4 SINE Alu -2 148 119 1 1594 363 23 0 0 chr4 132325705 132325749 -23304371 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1594 753 177 41 28 chr4 132325749 132325865 -23304255 - B1_Mur4 SINE Alu -32 118 2 1 1594 1664 36 0 0 chr4 132325892 132326085 -23304035 - B2_Mm1a SINE B2 0 193 1 1 1594 258 276 17 0 chr4 132326238 132326296 -23303824 + B1_Mus1 SINE Alu 2 60 -88 1 1594 238 292 15 15 chr4 132326239 132326305 -23303815 + ID_B1 SINE B4 84 149 -75 1 1594 286 249 214 32 chr4 132326623 132326810 -23303310 + B4A SINE B4 37 257 -35 1 1594 405 274 82 52 chr4 132326921 132327056 -23303064 + RSINE1 SINE B4 17 155 -10 1 1594 201 74 0 0 chr4 132327091 132327118 -23303002 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1594 1230 36 0 0 chr4 132327119 132327259 -23302861 - B1_Mus1 SINE Alu -6 142 3 1 1594 722 169 35 14 chr4 132327276 132327420 -23302700 + B1_Mus1 SINE Alu 1 147 -1 1 1594 385 289 17 50 chr4 132327550 132327670 -23302450 + PB1D7 SINE Alu 3 118 -2 1 1594 374 270 80 9 chr4 132328063 132328175 -23301945 + L2a LINE L2 3304 3423 -3 1 1594 867 54 0 0 chr4 132328264 132328375 -23301745 + B1_Mus1 SINE Alu 3 113 -35 1 1594 936 209 89 0 chr4 132328422 132328613 -23301507 + B3 SINE B2 3 210 -6 1 1594 433 103 33 0 chr4 132328667 132328776 -23301344 - B2_Mm2 SINE B2 0 195 47 1 1594 224 171 24 0 chr4 132328740 132328781 -23301339 - B4 SINE B4 -210 82 41 1 1594 1215 99 35 0 chr4 132328815 132328987 -23301133 - B2_Mm1t SINE B2 -14 179 2 1 1594 345 270 46 38 chr4 132329116 132329247 -23300873 + B1F SINE Alu 1 132 -17 1 1594 1478 50 28 0 chr4 132329268 132329449 -23300671 - B2_Mm1t SINE B2 -6 187 2 1 1594 549 248 82 38 chr4 132329538 132329697 -23300423 + ID_B1 SINE B4 59 224 0 1 1594 241 291 82 64 chr4 132329882 132329992 -23300128 + B4 SINE B4 103 214 -78 1 1594 590 238 6 101 chr4 132330001 132330160 -23299960 + B1_Mur3 SINE Alu 6 149 0 1 1594 566 189 70 70 chr4 132330307 132330449 -23299671 + B1_Mur2 SINE Alu 1 142 -7 1 1594 326 260 52 0 chr4 132330457 132330534 -23299586 + B1_Mur4 SINE Alu 69 149 -1 1 1594 331 308 101 83 chr4 132330541 132330817 -23299303 + B4A SINE B4 2 282 -10 1 1594 227 223 287 0 chr4 132331130 132331224 -23298896 - B3A SINE B2 -75 123 3 1 1594 360 251 11 0 chr4 132332736 132332812 -23297308 + PB1D10 SINE Alu 21 102 -18 1 1594 486 0 0 0 chr4 132332961 132333015 -23297105 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1594 465 141 0 49 chr4 132333015 132333097 -23297023 + B1_Mur2 SINE Alu 71 148 -1 1 1594 332 254 0 160 chr4 132334427 132334558 -23295562 - RSINE1 SINE B4 -17 148 39 1 1594 505 178 55 11 chr4 132335148 132335239 -23294881 + B1_Mur2 SINE Alu 43 137 -12 1 1594 648 168 53 0 chr4 132335273 132335386 -23294734 + B3A SINE B2 9 127 -71 1 1594 681 281 89 25 chr4 132335467 132335704 -23294416 - B4A SINE B4 -40 252 1 1 1594 1117 60 0 0 chr4 132335742 132335876 -23294244 + B1_Mus1 SINE Alu 2 135 -13 1 1594 183 42 0 0 chr4 132335876 132335900 -23294220 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1594 432 232 158 44 chr4 132335949 132335993 -23294127 - B3 SINE B2 -6 210 164 1 1594 1319 67 50 6 chr4 132335993 132336172 -23293948 - B2_Mm1t SINE B2 -5 188 2 1 1594 432 232 158 44 chr4 132336172 132336285 -23293835 - B3 SINE B2 -53 163 35 1 1594 1159 75 0 0 chr4 132336936 132337083 -23293037 + B1_Mus2 SINE Alu 1 147 0 1 1594 206 309 240 25 chr4 132337209 132337405 -23292715 - MIR SINE MIR -27 241 4 1 1594 1009 55 6 161 chr4 132337484 132337658 -23292462 + B1_Mus1 SINE Alu 2 148 0 1 1594 466 176 82 0 chr4 132337926 132338011 -23292109 - B1_Mur2 SINE Alu -57 92 1 1 1594 364 271 0 23 chr4 132337934 132338021 -23292099 - MT2B2 LTR ERVL -345 239 155 1 1594 994 186 12 6 chr4 132338060 132338228 -23291892 - B3A SINE B2 -29 169 1 1 1594 341 272 0 0 chr4 132338850 132338931 -23291189 + ID2 SINE ID 3 83 0 1 1594 215 304 96 21 chr4 132339700 132339794 -23290326 + MIR SINE MIR 25 125 -137 1 1594 288 0 0 0 chr4 132339809 132339841 -23290279 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1594 650 348 44 91 chr4 132340397 132340716 -23289404 + MTE2a LTR MaLR 7 310 -69 1 1594 200 259 0 0 chr4 132341571 132341625 -23288495 + CT-rich Low_complexity Low_complexity 2 55 0 1 1594 1671 31 0 0 chr4 132342309 132342500 -23287620 - B2_Mm1t SINE B2 -1 192 2 1 1594 34 24 0 0 chr4 132342506 132342547 -23287573 + AT_rich Low_complexity Low_complexity 1 41 0 1 1594 703 90 0 0 chr4 132342554 132342654 -23287466 + B2_Mm1a SINE B2 94 193 0 1 1594 1491 75 0 0 chr4 132342677 132342864 -23287256 + B2_Mm1t SINE B2 2 188 -5 1 1594 336 51 17 0 chr4 132342865 132342924 -23287196 + L1Md_F2 LINE L1 6523 6582 0 1 1594 439 261 32 32 chr4 132342934 132343057 -23287063 - B3A SINE B2 0 198 76 1 1594 643 177 8 46 chr4 132343043 132343173 -23286947 + B3 SINE B2 91 215 -1 1 1594 849 193 7 20 chr4 132343214 132343362 -23286758 - B1_Mur3 SINE Alu -2 147 2 1 1594 22 0 0 0 chr4 132343378 132343400 -23286720 + AT_rich Low_complexity Low_complexity 1 22 0 1 1594 303 231 225 62 chr4 132343400 132343492 -23286628 + ID_B1 SINE B4 75 192 -32 1 1594 3357 48 0 5 chr4 132343492 132343890 -23286230 + MTA_Mm LTR MaLR 1 396 0 1 1594 303 231 225 62 chr4 132343890 132343926 -23286194 + ID_B1 SINE B4 193 224 0 1 1594 447 205 68 51 chr4 132344269 132344387 -23285733 + PB1D7 SINE Alu 1 120 0 1 1594 1111 90 0 14 chr4 132344493 132344640 -23285480 - B1_Mus1 SINE Alu -2 146 2 1 1594 586 265 48 0 chr4 132344755 132344902 -23285218 - RSINE1 SINE B4 -11 154 1 1 1594 21 0 0 31 chr4 132344903 132344921 -23285199 + AT_rich Low_complexity Low_complexity 1 18 0 1 1594 1332 57 62 0 chr4 132344921 132345097 -23285023 + B2_Mm1t SINE B2 1 187 -6 1 1594 21 0 0 31 chr4 132345097 132345110 -23285010 + AT_rich Low_complexity Low_complexity 1 13 0 1 1594 249 245 38 0 chr4 132345111 132345164 -23284956 - RSINE1 SINE B4 -3 162 108 1 1594 207 0 0 0 chr4 132346095 132346118 -23284002 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1594 1199 90 102 0 chr4 132346606 132346783 -23283337 + B2_Mm2 SINE B2 1 195 0 1 1594 258 333 0 43 chr4 132346937 132347053 -23283067 + L1MC4 LINE L1 7708 7818 -224 1 1594 471 88 0 14 chr4 132347113 132347182 -23282938 - B2_Mm2 SINE B2 -126 69 2 1 1594 1254 48 0 0 chr4 132347218 132347364 -23282756 - B1_Mus2 SINE Alu -1 146 1 1 1594 1554 32 5 40 chr4 132347398 132347596 -23282524 + B2_Mm1a SINE B2 2 192 -1 1 1594 428 229 132 37 chr4 132347628 132347764 -23282356 + B1_Mur2 SINE Alu 1 149 0 1 1594 600 258 45 19 chr4 132347786 132347940 -23282180 - RSINE1 SINE B4 -3 162 5 1 1594 318 229 50 40 chr4 132347953 132348053 -23282067 - ID_B1 SINE B4 -80 144 44 1 1594 405 39 0 0 chr4 132349030 132349081 -23281039 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1594 751 284 30 0 chr4 132349088 132349285 -23280835 - ID_B1 SINE B4 -21 203 1 1 1594 475 293 21 7 chr4 132349343 132349484 -23280636 - RSINE1 SINE B4 -19 146 4 1 1594 1758 16 0 0 chr4 132349502 132349695 -23280425 - B2_Mm1a SINE B2 0 193 1 1 1594 267 321 95 0 chr4 132350327 132350411 -23279709 + RSINE1 SINE B4 61 152 -13 1 1594 249 33 0 0 chr4 132350417 132350447 -23279673 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 1 1594 346 238 21 16 chr4 132351638 132351734 -23278386 + PB1D7 SINE Alu 43 132 -17 1 1594 615 184 64 0 chr4 132352026 132352151 -23277969 - B1F SINE Alu -16 133 1 1 1594 1692 206 96 26 chr4 132352456 132352840 -23277280 - MTD LTR MaLR -8 411 1 1 1594 1174 75 0 0 chr4 132352907 132353053 -23277067 - B1_Mm SINE Alu 0 147 2 1 1594 579 29 0 0 chr4 132353084 132353153 -23276967 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1594 396 125 26 18 chr4 132353153 132353267 -23276853 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 1 1594 656 267 93 10 chr4 132353268 132353461 -23276659 - ID_B1 SINE B4 -13 211 3 1 1594 341 282 167 25 chr4 132353464 132353584 -23276536 - B1F1 SINE Alu 0 149 13 1 1594 263 220 273 9 chr4 132353871 132353981 -23276139 + ID_B1 SINE B4 79 217 -7 1 1594 304 316 9 17 chr4 132354274 132354390 -23275730 + GA-rich Low_complexity Low_complexity 2 116 0 1 1594 1174 108 5 98 chr4 132354463 132354494 -23275626 - B2_Mm2 SINE B2 0 195 174 1 1594 1194 68 0 0 chr4 132354494 132354640 -23275480 + B1_Mm SINE Alu 1 146 -1 1 1594 1174 108 5 98 chr4 132354640 132354823 -23275297 - B2_Mm2 SINE B2 -22 173 1 1 1594 1596 58 0 0 chr4 132354846 132355037 -23275083 - B2_Mm1a SINE B2 -1 192 2 1 1594 300 27 0 0 chr4 132355040 132355077 -23275043 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 1594 1106 102 0 7 chr4 132355094 132355242 -23274878 - B1_Mus1 SINE Alu 0 148 2 1 1594 26 50 0 0 chr4 132355243 132355283 -23274837 + AT_rich Low_complexity Low_complexity 1 40 0 1 1594 355 202 236 0 chr4 132355283 132355372 -23274748 - PB1D10 SINE Alu -7 110 1 1 1594 1500 54 21 0 chr4 132355403 132355589 -23274531 + B2_Mm2 SINE B2 1 190 -5 1 1594 1209 82 0 0 chr4 132355592 132355739 -23274381 + B1_Mus1 SINE Alu 2 148 0 1 1594 1145 198 10 0 chr4 132355789 132355996 -23274124 - B3 SINE B2 -5 211 3 1 1594 410 265 162 21 chr4 132356124 132356298 -23273822 + B3A SINE B2 8 185 -10 1 1594 529 232 26 104 chr4 132356298 132356452 -23273668 + B1_Mur2 SINE Alu 1 142 -7 1 1594 1191 49 14 0 chr4 132356454 132356596 -23273524 - B1_Mus2 SINE Alu -2 145 2 1 1594 686 190 230 0 chr4 132356622 132356796 -23273324 + ID_B1 SINE B4 3 216 -8 1 1594 598 182 20 0 chr4 132356831 132356948 -23273172 + B1_Mur1 SINE Alu 10 137 -12 1 1594 373 161 11 11 chr4 132356982 132357070 -23273050 + CT-rich Low_complexity Low_complexity 2 89 0 1 1594 321 185 0 0 chr4 132357076 132357141 -23272979 + T-rich Low_complexity Low_complexity 1 65 0 1 1594 1094 90 28 0 chr4 132357141 132357285 -23272835 - B1_Mus1 SINE Alu 0 148 1 1 1594 808 117 11 3 chr4 132357287 132357417 -23272703 - B1_Mus1 SINE Alu 0 149 20 1 1594 441 54 0 0 chr4 132358628 132358684 -23271436 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1594 474 230 117 16 chr4 132358717 132358845 -23271275 + RSINE1 SINE B4 4 144 -21 1 1594 1002 103 0 179 chr4 132358890 132358962 -23271158 - B2_Mm2 SINE B2 -19 176 122 1 1594 1176 68 7 0 chr4 132358962 132359109 -23271011 + B1_Mus1 SINE Alu 1 148 0 1 1594 1002 103 0 179 chr4 132359109 132359248 -23270872 - B2_Mm2 SINE B2 -74 121 3 1 1594 302 267 157 10 chr4 132359278 132359380 -23270740 + PB1D10 SINE Alu 1 117 0 1 1594 1669 26 0 20 chr4 132359444 132359641 -23270479 + B2_Mm1a SINE B2 1 193 0 1 1594 1242 54 0 0 chr4 132359655 132359802 -23270318 + B1_Mus1 SINE Alu 2 148 0 1 1594 249 33 0 0 chr4 132359804 132359834 -23270286 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1594 886 227 35 30 chr4 132359849 132360009 -23270111 + B3 SINE B2 5 168 -48 1 1594 204 40 0 0 chr4 132360009 132360034 -23270086 + (CATA)n Simple_repeat Simple_repeat 2 26 0 1 1594 886 227 35 30 chr4 132360034 132360073 -23270047 + B3 SINE B2 169 205 -11 1 1594 1152 68 0 7 chr4 132360096 132360243 -23269877 + B1_Mm SINE Alu 2 147 0 1 1594 189 0 0 0 chr4 132360243 132360264 -23269856 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1594 266 299 53 61 chr4 132360776 132360890 -23269230 + PB1D9 SINE Alu 1 113 -7 1 1594 192 77 0 0 chr4 132360893 132360919 -23269201 + (GGAGA)n Simple_repeat Simple_repeat 2 27 0 1 1594 472 294 6 14 chr4 132360919 132361046 -23269074 + B3A SINE B2 48 174 -42 1 1594 749 95 9 0 chr4 132361128 132361233 -23268887 - B1_Mus1 SINE Alu -37 111 6 1 1594 422 256 53 60 chr4 132361132 132361265 -23268855 - B4 SINE B4 -95 197 66 1 1594 215 296 0 155 chr4 132361274 132361358 -23268762 + B3 SINE B2 4 74 -142 1 1594 1962 173 38 60 chr4 132361397 132361438 -23268682 + RLTR42-int LTR ERVK 4144 4174 -1348 1 1594 1245 48 0 0 chr4 132361438 132361585 -23268535 - B1_Mm SINE Alu 0 147 1 1 1594 1962 173 38 60 chr4 132361585 132362023 -23268097 + RLTR42-int LTR ERVK 4175 4612 -910 1 1594 282 217 56 42 chr4 132362098 132362170 -23267950 + RLTR42-int LTR ERVK 4864 4936 -586 1 1594 1600 214 48 12 chr4 132362193 132362524 -23267596 + RLTR24 LTR ERV1 187 529 0 1 1594 1260 112 6 6 chr4 132362546 132362725 -23267395 - B2_Mm1t SINE B2 -14 179 1 1 1594 411 195 12 0 chr4 132362753 132362835 -23267285 + Lx7 LINE L1 7160 7242 -454 1 1594 180 0 0 0 chr4 132362854 132362874 -23267246 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1594 363 264 0 0 chr4 132362902 132362974 -23267146 + RSINE1 SINE B4 51 122 -43 1 1594 297 0 0 0 chr4 132362996 132363029 -23267091 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1594 702 228 103 0 chr4 132363038 132363183 -23266937 + RSINE1 SINE B4 6 165 0 1 1594 926 223 90 0 chr4 132363203 132363391 -23266729 - B3 SINE B2 -11 205 1 1 1594 23 0 0 0 chr4 132363394 132363417 -23266703 + AT_rich Low_complexity Low_complexity 1 23 0 1 1594 730 176 0 0 chr4 132363429 132363548 -23266572 + B1_Mus1 SINE Alu 30 148 0 1 1594 570 124 0 0 chr4 132363591 132363680 -23266440 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 1 1594 505 218 0 22 chr4 132363736 132363859 -23266261 + B1_Mur2 SINE Alu 21 138 -11 1 1594 368 289 140 30 chr4 132363880 132364044 -23266076 - B3A SINE B2 -16 182 1 1 1594 251 276 0 0 chr4 132364045 132364103 -23266017 + PB1 SINE Alu 68 125 -2 1 1594 180 316 62 10 chr4 132364758 132364854 -23265266 + MIR3 SINE MIR 99 199 -9 1 1594 381 223 42 21 chr4 132365063 132365078 -23265042 + B4 SINE B4 70 86 -206 1 1594 671 93 2 20 chr4 132365078 132365184 -23264936 + B1_Mus1 SINE Alu 1 107 -13 1 1594 258 222 33 100 chr4 132365118 132365186 -23264934 + RLTR25B LTR ERVK 441 505 -523 1 1594 359 31 30 30 chr4 132365186 132365253 -23264867 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 1 1594 258 222 33 100 chr4 132365253 132365274 -23264846 + RLTR25B LTR ERVK 506 524 -504 1 1594 232 266 64 121 chr4 132366161 132366302 -23263818 + RMER10A LTR ERVL 17 149 -293 1 1594 2118 171 118 111 chr4 132366304 132366734 -23263386 + RLTR24 LTR ERV1 1 445 -84 1 1594 584 76 410 0 chr4 132366734 132366839 -23263281 + B1_Mus1 SINE Alu 1 148 0 1 1594 2118 171 118 111 chr4 132366839 132366933 -23263187 + RLTR24 LTR ERV1 446 529 0 1 1594 998 134 12 0 chr4 132367125 132367297 -23262823 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 1 1594 1503 77 5 17 chr4 132367749 132367975 -23262145 + ORR1A0 LTR MaLR 148 384 0 1 1594 1157 53 0 0 chr4 132367975 132368126 -23261994 + ORR1A0-int LTR MaLR 1 151 -1641 1 1594 186 118 0 0 chr4 132368196 132368230 -23261890 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1594 214 50 24 24 chr4 132368429 132368470 -23261650 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 1 1594 1212 41 0 7 chr4 132368612 132368759 -23261361 + B1_Mm SINE Alu 2 147 0 1 1594 261 0 0 0 chr4 132368771 132368800 -23261320 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1594 683 181 325 0 chr4 132368843 132369009 -23261111 + RLTR14 LTR ERV1 99 318 -64 1 1594 307 326 0 42 chr4 132369169 132369313 -23260807 + RLTR19-int LTR ERVK 1862 1999 -3523 1 1594 767 77 10 0 chr4 132369348 132369452 -23260668 + B1_Mus1 SINE Alu 1 105 -43 1 1594 271 261 54 9 chr4 132369459 132369571 -23260549 + RLTR19-int LTR ERVK 2758 2874 -3263 1 1594 348 197 97 148 chr4 132369653 132369743 -23260377 + RLTR19-int LTR ERVK 2891 2984 -3153 1 1594 1466 52 16 10 chr4 132369743 132369936 -23260184 - B2_Mm2 SINE B2 -1 194 1 1 1594 348 197 97 148 chr4 132369936 132370000 -23260120 + RLTR19-int LTR ERVK 2985 3037 -3100 1 1594 1284 260 77 103 chr4 132370193 132371216 -23258904 + RLTR19-int LTR ERVK 3385 4381 -1756 1 1594 2275 189 44 108 chr4 132371417 132371982 -23258138 + RLTR24 LTR ERV1 1 529 0 1 1594 1267 27 7 0 chr4 132372661 132372807 -23257313 + B1_Mus2 SINE Alu 1 147 0 1 1594 822 21 0 0 chr4 132373493 132373589 -23256531 + (TCC)n Simple_repeat Simple_repeat 1 96 0 1 1594 396 0 0 0 chr4 132373782 132373826 -23256294 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1594 227 315 11 11 chr4 132373827 132373898 -23256222 + C-rich Low_complexity Low_complexity 24 94 0 1 1594 186 43 0 0 chr4 132373898 132373921 -23256199 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1594 227 315 11 11 chr4 132373921 132373939 -23256181 + C-rich Low_complexity Low_complexity 6 23 0 1 1594 318 87 0 0 chr4 132373944 132373990 -23256130 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1594 1804 235 35 14 chr4 132374006 132374434 -23255686 + Lx7 LINE L1 6179 6615 -1081 1 1594 987 135 56 6 chr4 132374438 132374617 -23255503 + B2_Mm2 SINE B2 2 189 -6 1 1594 1667 228 57 12 chr4 132374617 132375039 -23255081 + Lx7 LINE L1 6610 7050 -646 1 1594 495 200 0 0 chr4 132375062 132375147 -23254973 - B4A SINE B4 -207 85 1 1 1594 180 321 71 0 chr4 132375202 132375258 -23254862 + L2b LINE L2 3063 3122 -253 1 1594 402 306 16 8 chr4 132375261 132375383 -23254737 + PB1 SINE Alu 1 123 -4 1 1594 1082 194 17 195 chr4 132375452 132375517 -23254603 - RLTR14 LTR ERV1 0 382 326 1 1594 1005 110 67 34 chr4 132375517 132375667 -23254453 + B2_Mm2 SINE B2 2 157 -38 1 1594 324 70 0 0 chr4 132375667 132375710 -23254410 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 1 1594 1005 110 67 34 chr4 132375710 132375737 -23254383 + B2_Mm2 SINE B2 158 185 -10 1 1594 1082 194 17 195 chr4 132375737 132376133 -23253987 - RLTR14 LTR ERV1 -57 325 3 1 1594 618 176 32 34 chr4 132376310 132376440 -23253680 + B1F2 SINE Alu 8 136 -13 1 1594 1230 41 0 39 chr4 132376475 132376628 -23253492 - B1_Mus1 SINE Alu 0 148 2 1 1594 386 240 108 8 chr4 132376875 132377005 -23253115 - MER90a LTR ERV1 -374 240 98 1 1594 627 198 149 113 chr4 132376975 132377023 -23253097 - MTD LTR MaLR -14 405 372 1 1594 1240 99 72 0 chr4 132377023 132377204 -23252916 + B2_Mm2 SINE B2 2 195 0 1 1594 627 209 432 71 chr4 132377204 132377462 -23252658 - MTD LTR MaLR -48 371 3 1 1594 2199 128 21 58 chr4 132377495 132377877 -23252243 - RLTR14 LTR ERV1 0 382 15 1 1594 192 254 82 33 chr4 132377968 132378029 -23252091 + L4 LINE RTE 1783 1846 -183 1 1594 218 122 0 24 chr4 132378133 132378175 -23251945 + (TGGGGG)n Simple_repeat Simple_repeat 4 44 0 1 1594 1229 61 0 0 chr4 132378429 132378576 -23251544 - B1_Mus1 SINE Alu -1 147 1 1 1594 387 227 102 0 chr4 132378640 132378728 -23251392 - B1F SINE Alu -7 142 46 1 1594 880 141 29 52 chr4 132378728 132378900 -23251220 - B2_Mm2 SINE B2 -26 169 2 1 1594 1152 123 42 11 chr4 132378960 132379149 -23250971 + B2_Mm2 SINE B2 1 195 0 1 1594 357 194 415 0 chr4 132379593 132379717 -23250403 + B3A SINE B2 4 179 -19 1 1594 261 0 0 0 chr4 132379748 132379777 -23250343 + (CAT)n Simple_repeat Simple_repeat 2 30 0 1 1594 792 126 104 0 chr4 132380611 132380746 -23249374 + B1_Mur4 SINE Alu 1 149 -1 1 1594 506 210 69 10 chr4 132380781 132380882 -23249238 - B1_Mur1 SINE Alu -7 142 36 1 1594 338 266 0 69 chr4 132380808 132380909 -23249211 - MT2B LTR ERVL -340 261 168 1 1594 237 286 210 70 chr4 132380893 132381036 -23249084 - RSINE1 SINE B4 0 165 3 1 1594 500 236 38 0 chr4 132381039 132381145 -23248975 - PB1D10 SINE Alu -7 110 1 1 1594 188 280 180 0 chr4 132381254 132381354 -23248766 + L2b LINE L2 3050 3167 -208 1 1594 537 278 52 19 chr4 132381425 132381578 -23248542 - ID_B1 SINE B4 -74 218 65 1 1594 410 302 145 42 chr4 132381608 132381699 -23248421 - B4A SINE B4 -48 244 144 1 1594 180 0 0 0 chr4 132381699 132381719 -23248401 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 1 1594 410 302 145 42 chr4 132381719 132381841 -23248279 - B4A SINE B4 -149 143 10 1 1594 345 276 153 9 chr4 132381863 132382001 -23248119 - B3A SINE B2 -54 162 3 1 1594 323 147 252 47 chr4 132382018 132382125 -23247995 - B1_Mur4 SINE Alu 0 150 22 1 1594 396 292 47 0 chr4 132382441 132382547 -23247573 - ID_B1 SINE B4 -3 221 111 1 1595 935 226 37 33 chr4 132384413 132384589 -23245531 + B3 SINE B2 1 169 -47 1 1595 342 67 0 0 chr4 132384589 132384634 -23245486 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 1595 935 226 37 33 chr4 132384634 132384672 -23245448 + B3 SINE B2 170 215 -1 1 1595 502 164 507 0 chr4 132384916 132385056 -23245064 + B3 SINE B2 2 212 -4 1 1595 270 240 101 0 chr4 132385139 132385224 -23244896 - ID4 SINE ID -56 96 5 1 1595 1271 41 0 0 chr4 132386017 132386164 -23243956 - B1_Mus2 SINE Alu 0 147 1 1 1595 252 0 0 0 chr4 132386509 132386537 -23243583 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1595 1320 14 0 0 chr4 132386866 132387013 -23243107 + B1_Mm SINE Alu 1 147 0 1 1595 261 0 0 0 chr4 132387018 132387047 -23243073 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1595 186 118 0 0 chr4 132387299 132387333 -23242787 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 1 1595 428 278 35 3 chr4 132387391 132387497 -23242623 - B1F SINE Alu -11 109 1 1 1595 457 123 12 24 chr4 132387827 132387910 -23242210 - B3 SINE B2 -134 82 1 1 1595 279 0 0 0 chr4 132388081 132388112 -23242008 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1595 780 179 160 16 chr4 132388391 132388578 -23241542 + B3 SINE B2 3 216 0 1 1595 352 238 25 0 chr4 132389213 132389293 -23240827 - ID4 SINE ID 0 83 2 1 1595 425 239 32 177 chr4 132389297 132389455 -23240665 - B1F SINE Alu -7 142 8 1 1595 25 0 0 0 chr4 132390456 132390481 -23239639 + AT_rich Low_complexity Low_complexity 1 25 0 1 1595 1039 122 0 20 chr4 132391423 132391573 -23238547 + B1_Mus1 SINE Alu 1 147 -1 1 1595 314 206 350 24 chr4 132391579 132391741 -23238379 + B3 SINE B2 2 216 0 1 1595 407 193 235 0 chr4 132392050 132392169 -23237951 + B1_Mm SINE Alu 1 147 0 1 1595 239 296 0 47 chr4 132392198 132392283 -23237837 + PB1D10 SINE Alu 36 116 -1 1 1595 558 266 21 7 chr4 132392706 132392846 -23237274 - ID_B1 SINE B4 -1 223 82 1 1595 329 285 108 62 chr4 132392827 132392866 -23237254 + ID_B1 SINE B4 41 224 0 1 1595 581 207 95 15 chr4 132392866 132393003 -23237117 + B1_Mur2 SINE Alu 2 149 0 1 1595 796 255 5 11 chr4 132393011 132393201 -23236919 - B3A SINE B2 -9 189 1 1 1595 236 279 0 0 chr4 132393471 132393532 -23236588 + B4A SINE B4 85 145 -147 1 1595 249 145 308 26 chr4 132393486 132393564 -23236556 + B1F2 SINE Alu 15 114 -3 1 1595 453 178 8 93 chr4 132393624 132393742 -23236378 + PB1D10 SINE Alu 1 108 -9 1 1595 506 184 0 58 chr4 132393770 132393874 -23236246 + B1_Mur1 SINE Alu 52 149 0 1 1595 315 122 0 0 chr4 132394599 132394648 -23235472 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1595 380 322 19 38 chr4 132394955 132395113 -23235007 - RSINE1 SINE B4 -8 157 3 1 1595 376 308 53 0 chr4 132395476 132395609 -23234511 + B1F1 SINE Alu 1 140 -9 1 1595 481 146 0 0 chr4 132395622 132395704 -23234416 + PB1D9 SINE Alu 31 112 -8 1 1595 241 239 45 0 chr4 132395838 132395905 -23234215 - PB1D9 SINE Alu -6 114 45 1 1595 283 237 25 38 chr4 132396198 132396277 -23233843 - ID4_ SINE ID -5 78 1 1 1595 593 177 92 8 chr4 132396326 132396457 -23233663 + B1_Mur2 SINE Alu 1 142 -7 1 1595 1146 48 14 7 chr4 132396790 132396936 -23233184 - B1_Mus1 SINE Alu -1 147 1 1 1595 303 344 0 41 chr4 132397342 132397439 -23232681 + B1F1 SINE Alu 52 144 -5 1 1595 255 125 0 0 chr4 132398860 132398900 -23231220 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1595 189 0 0 0 chr4 132400211 132400232 -23229888 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1 1595 2152 128 0 49 chr4 132400268 132400555 -23229565 + ORR1A2 LTR MaLR 1 272 -55 1 1595 1491 58 11 0 chr4 132400555 132400745 -23229375 + B2_Mm1t SINE B2 2 193 0 1 1595 2152 128 0 49 chr4 132400745 132400801 -23229319 + ORR1A2 LTR MaLR 273 327 0 1 1595 10626 130 67 25 chr4 132400801 132402685 -23227435 + ORR1A2-int LTR MaLR 1 1963 0 1 1595 2034 109 26 0 chr4 132402685 132402996 -23227124 + ORR1A2 LTR MaLR 1 319 -8 1 1595 8250 140 124 23 chr4 132403000 132404750 -23225370 + ORR1A2-int LTR MaLR 1 1927 -36 1 1595 2123 109 15 58 chr4 132404764 132405051 -23225069 + ORR1A2 LTR MaLR 1 286 -41 1 1595 1206 97 16 26 chr4 132405051 132405241 -23224879 + B2_Mm1t SINE B2 1 188 -5 1 1595 2123 109 15 58 chr4 132405241 132405295 -23224825 + ORR1A2 LTR MaLR 287 327 0 1 1595 587 219 32 0 chr4 132405573 132405696 -23224424 + RSINE1 SINE B4 3 129 -36 1 1595 941 218 35 5 chr4 132405758 132405956 -23224164 + B3 SINE B2 13 216 0 1 1595 1632 149 7 0 chr4 132406537 132406806 -23223314 + RMER1B Other Other 618 888 -178 1 1595 251 190 175 12 chr4 132406827 132406899 -23223221 + RMER1B Other Other 947 1032 -34 1 1595 387 0 0 0 chr4 132406899 132406942 -23223178 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1595 446 256 54 8 chr4 132406963 132407093 -23223027 + B4 SINE B4 123 258 -34 1 1595 1647 36 0 10 chr4 132407404 132407598 -23222522 + B2_Mm1a SINE B2 2 193 0 1 1595 377 238 0 0 chr4 132407616 132407700 -23222420 + B3 SINE B2 95 178 -38 1 1595 264 267 114 57 chr4 132408109 132408232 -23221888 - B1F2 SINE Alu -16 133 4 1 1595 1025 223 15 0 chr4 132408482 132408688 -23221432 + B3 SINE B2 2 210 -6 1 1595 1332 82 49 5 chr4 132408704 132408888 -23221232 - B2_Mm2 SINE B2 -3 192 1 1 1595 257 51 26 0 chr4 132409040 132409079 -23221041 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1 1595 201 297 98 9 chr4 132409214 132409326 -23220794 + MER5B DNA MER1_type 6 127 -51 1 1595 332 276 9 5 chr4 132409717 132409822 -23220298 - PB1D10 SINE Alu -40 109 5 1 1595 315 232 14 0 chr4 132411596 132411665 -23218455 - ID4 SINE ID -11 72 3 1 1595 526 239 43 0 chr4 132412106 132412244 -23217876 - B1F2 SINE Alu -5 144 1 1 1595 831 167 7 0 chr4 132412605 132412749 -23217371 + B1_Mur1 SINE Alu 5 149 0 1 1595 718 256 136 0 chr4 132413386 132413562 -23216558 - B3 SINE B2 -16 200 1 1 1595 282 308 50 78 chr4 132413654 132413795 -23216325 - ID_B1 SINE B4 -6 218 82 1 1595 180 0 0 0 chr4 132414420 132414440 -23215680 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1595 423 333 12 6 chr4 132414550 132414716 -23215404 + MER21-int LTR ERV1 1773 1939 -2252 1 1595 516 278 64 44 chr4 132414751 132414977 -23215143 + MER21-int LTR ERV1 2184 2353 -1838 1 1595 573 172 71 155 chr4 132415142 132415386 -23214734 + ORR1C1 LTR MaLR 1 243 -131 1 1595 705 192 96 90 chr4 132415421 132415598 -23214522 + B3A SINE B2 7 184 -11 1 1595 1318 77 50 0 chr4 132416162 132416343 -23213777 + B2_Mm2 SINE B2 1 190 -5 1 1595 198 0 0 0 chr4 132416817 132416839 -23213281 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1595 1534 58 16 0 chr4 132417088 132417279 -23212841 + B2_Mm2 SINE B2 1 194 -1 1 1595 499 231 0 0 chr4 132417324 132417428 -23212692 - B3 SINE B2 -27 189 86 1 1595 24 0 0 0 chr4 132417451 132417475 -23212645 + AT_rich Low_complexity Low_complexity 1 24 0 1 1595 1593 52 16 0 chr4 132417477 132417669 -23212451 + B2_Mm2 SINE B2 1 195 0 1 1595 589 248 35 0 chr4 132417683 132417824 -23212296 - B3 SINE B2 -69 147 2 1 1595 313 259 72 27 chr4 132417830 132417941 -23212179 - PB1D10 SINE Alu -1 116 1 1 1595 369 220 0 0 chr4 132417967 132418032 -23212088 + T-rich Low_complexity Low_complexity 27 91 0 1 1595 1100 62 14 0 chr4 132418032 132418176 -23211944 - B1_Mus1 SINE Alu 0 148 3 1 1595 369 220 0 0 chr4 132418176 132418201 -23211919 + T-rich Low_complexity Low_complexity 2 26 0 1 1595 850 192 14 0 chr4 132418203 132418349 -23211771 - B1_Mur2 SINE Alu 0 149 2 1 1595 22 35 0 0 chr4 132418355 132418384 -23211736 + AT_rich Low_complexity Low_complexity 1 29 0 1 1595 1105 215 0 0 chr4 132418398 132418603 -23211517 + B3 SINE B2 11 215 -1 1 1595 351 127 0 0 chr4 132418605 132418668 -23211452 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1595 926 92 0 14 chr4 132419757 132419901 -23210219 + (TTC)n Simple_repeat Simple_repeat 2 143 0 1 1595 668 169 106 15 chr4 132419905 132420037 -23210083 - B1_Mus1 SINE Alu -3 145 2 1 1595 1200 89 72 0 chr4 132420110 132420290 -23209830 + B2_Mm2 SINE B2 1 193 -2 1 1595 1090 102 0 0 chr4 132420722 132420869 -23209251 + B1_Mus2 SINE Alu 1 147 0 1 1595 718 162 0 58 chr4 132421087 132421225 -23208895 + B1_Mur3 SINE Alu 1 130 -19 1 1595 1234 132 107 10 chr4 132422236 132422442 -23207678 - URR1A DNA MER1_type 0 226 1 1 1595 953 279 63 87 chr4 132423337 132423546 -23206574 + MTE2a LTR MaLR 1 204 -215 1 1595 1413 72 0 25 chr4 132423546 132423746 -23206374 + B2_Mm2 SINE B2 1 195 0 1 1595 953 279 58 94 chr4 132423746 132423950 -23206170 + MTE2a LTR MaLR 181 373 -6 1 1595 233 265 29 0 chr4 132424838 132424906 -23205214 + PB1 SINE Alu 5 74 -53 1 1595 371 203 58 29 chr4 132424957 132425094 -23205026 + RMER17B LTR ERVK 319 459 -499 1 1595 516 253 196 56 chr4 132425256 132425334 -23204786 + MLT1A0 LTR MaLR 1 102 -263 1 1595 1277 109 54 0 chr4 132425334 132425518 -23204602 + B2_Mm2 SINE B2 2 195 0 1 1595 516 253 196 56 chr4 132425518 132425589 -23204531 + MLT1A0 LTR MaLR 103 209 -156 1 1595 517 215 87 22 chr4 132425589 132425727 -23204393 + B1_Mur2 SINE Alu 2 148 -1 1 1595 516 253 196 56 chr4 132425727 132425882 -23204238 + MLT1A0 LTR MaLR 210 348 -17 1 1595 292 212 145 2 chr4 132426117 132426210 -23203910 + B1_Mur4 SINE Alu 1 103 -17 1 1595 396 0 0 0 chr4 132426237 132426281 -23203839 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1595 869 239 8 120 chr4 132426446 132426647 -23203473 - B3 SINE B2 0 216 32 1 1595 1361 57 85 0 chr4 132426647 132426824 -23203296 - B2_Mm1t SINE B2 0 193 2 1 1595 869 239 8 120 chr4 132426824 132426864 -23203256 - B3 SINE B2 -185 31 2 1 1595 858 144 50 0 chr4 132426882 132427021 -23203099 - B1_Mus2 SINE Alu 0 147 2 1 1595 188 35 35 0 chr4 132427606 132427635 -23202485 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1595 1294 63 62 17 chr4 132427930 132428109 -23202011 + B2_Mm1t SINE B2 2 188 -5 1 1595 236 194 161 0 chr4 132428175 132428237 -23201883 - PB1D7 SINE Alu -2 118 47 1 1595 595 269 220 0 chr4 132428446 132428628 -23201492 + ID_B1 SINE B4 1 222 -2 1 1595 995 128 0 20 chr4 132429368 132429519 -23200601 - B1_Mus1 SINE Alu 0 148 1 1 1595 312 329 12 0 chr4 132429880 132429965 -23200155 + RSINE1 SINE B4 6 91 -74 1 1595 272 288 149 52 chr4 132430443 132430597 -23199523 - L2 LINE L2 -416 3003 2835 1 1595 675 281 36 58 chr4 132431159 132431382 -23198738 - ID_B1 SINE B4 -6 218 1 1 1595 1213 35 7 0 chr4 132431580 132431724 -23198396 - B1_Mus1 SINE Alu -2 146 2 1 1595 622 188 78 21 chr4 132431761 132431902 -23198218 + B1_Mur4 SINE Alu 1 149 -1 1 1595 589 131 20 0 chr4 132432056 132432155 -23197965 + B1_Mus1 SINE Alu 2 102 -46 1 1595 312 91 0 0 chr4 132432455 132432499 -23197621 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1595 677 158 25 0 chr4 132432758 132432878 -23197242 - B3 SINE B2 -93 123 1 1 1595 889 170 18 18 chr4 132433267 132433435 -23196685 - B3 SINE B2 -1 215 48 1 1595 279 250 29 29 chr4 132433717 132433787 -23196333 + ID4_ SINE ID 4 73 -10 1 1595 403 176 0 0 chr4 132433845 132433913 -23196207 - ID4 SINE ID -13 70 3 1 1595 774 226 98 21 chr4 132433934 132434128 -23195992 + B3 SINE B2 2 210 -6 1 1595 300 241 66 44 chr4 132434232 132434323 -23195797 + B1F2 SINE Alu 2 94 -55 1 1595 252 0 0 0 chr4 132434331 132434359 -23195761 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1595 323 209 118 24 chr4 132434667 132434835 -23195285 + B3 SINE B2 33 216 0 1 1595 483 248 17 0 chr4 132434866 132434983 -23195137 + PB1D9 SINE Alu 2 120 0 1 1595 263 72 0 23 chr4 132434985 132435028 -23195092 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1595 280 226 0 0 chr4 132435276 132435329 -23194791 - PB1D10 SINE Alu -38 79 27 1 1595 270 0 0 0 chr4 132435436 132435466 -23194654 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1595 388 216 0 209 chr4 132435601 132435759 -23194361 - B1F1 SINE Alu -7 142 18 1 1595 276 381 32 9 chr4 132435773 132435990 -23194130 + MIRb SINE MIR 46 267 -1 1 1595 229 352 14 21 chr4 132436258 132436403 -23193717 + YREP_Mm Unknown Unknown 151 294 -1518 1 1595 567 202 26 0 chr4 132436290 132436404 -23193716 - ID_B1 SINE B4 -5 219 103 1 1595 819 189 7 0 chr4 132436631 132436779 -23193341 + B1_Mur1 SINE Alu 1 149 0 1 1595 447 111 22 90 chr4 132436793 132436862 -23193258 + B1_Mur3 SINE Alu 67 137 -12 1 1595 252 0 0 0 chr4 132436862 132436890 -23193230 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1595 447 111 22 90 chr4 132436890 132436909 -23193211 + B1_Mur3 SINE Alu 138 149 0 1 1595 895 121 28 7 chr4 132437155 132437297 -23192823 + B1_Mus1 SINE Alu 3 147 -1 1 1595 363 311 95 0 chr4 132437660 132437808 -23192312 + MIRb SINE MIR 99 260 -8 1 1595 342 238 120 28 chr4 132437928 132438036 -23192084 - PB1D7 SINE Alu -2 118 1 1 1595 450 256 85 8 chr4 132438086 132438216 -23191904 - B1F1 SINE Alu -9 140 1 1 1595 212 86 0 28 chr4 132438381 132438417 -23191703 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1 1595 695 165 36 50 chr4 132438422 132438562 -23191558 - B1_Mus1 SINE Alu -9 139 2 1 1595 537 204 64 32 chr4 132438634 132438791 -23191329 - RSINE1 SINE B4 -2 163 2 1 1595 856 168 27 20 chr4 132439020 132439166 -23190954 + B1_Mus2 SINE Alu 1 147 0 1 1595 216 0 0 0 chr4 132439252 132439276 -23190844 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1595 491 122 0 0 chr4 132440951 132441025 -23189095 + B1_Mus2 SINE Alu 68 141 -6 1 1595 814 146 0 0 chr4 132441530 132441660 -23188460 - B3 SINE B2 -86 130 1 1 1595 1109 82 12 12 chr4 132441956 132442129 -23187991 + B2_Mm2 SINE B2 23 195 0 1 1595 1210 29 0 0 chr4 132442350 132442489 -23187631 - B1_Mus1 SINE Alu -9 139 1 1 1595 808 105 8 53 chr4 132443040 132443171 -23186949 - B1_Mus1 SINE Alu -1 147 23 1 1595 778 140 79 22 chr4 132443184 132443323 -23186797 + B1_Mur1 SINE Alu 2 148 -1 1 1595 880 171 0 0 chr4 132443324 132443464 -23186656 + B1_Mus2 SINE Alu 1 140 -7 1 1595 1195 61 60 18 chr4 132443475 132443643 -23186477 + B2_Mm2 SINE B2 3 177 -18 1 1595 1495 68 16 0 chr4 132443651 132443841 -23186279 + B2_Mm2 SINE B2 2 194 -1 1 1595 492 169 100 75 chr4 132443845 132443970 -23186150 + B3 SINE B2 84 216 0 1 1595 447 310 115 21 chr4 132443964 132444155 -23185965 + B4A SINE B4 81 289 -3 1 1595 1276 239 82 36 chr4 132444308 132444620 -23185500 - RLTR40 LTR ERVK -5 812 364 1 1595 1398 73 16 10 chr4 132444620 132444638 -23185482 - B2_Mm2 SINE B2 0 195 175 1 1595 1226 61 0 0 chr4 132444638 132444786 -23185334 - B1_Mus1 SINE Alu 0 148 1 1 1595 1398 73 16 10 chr4 132444786 132444960 -23185160 - B2_Mm2 SINE B2 -21 174 2 1 1595 1276 251 143 54 chr4 132444960 132445240 -23184880 - RLTR40 LTR ERVK -454 363 99 1 1595 565 172 17 12 chr4 132445244 132445360 -23184760 - PB1D9 SINE Alu 0 150 31 1 1595 24 0 0 0 chr4 132445367 132445391 -23184729 + AT_rich Low_complexity Low_complexity 1 24 0 1 1595 1765 111 7 25 chr4 132445500 132445778 -23184342 + MTB_Mm LTR MaLR 1 273 -134 1 1595 347 20 20 0 chr4 132445777 132445827 -23184293 + MTB_Mm LTR MaLR 238 288 -133 1 1595 941 76 20 40 chr4 132445826 132445977 -23184143 + MTB_Mm LTR MaLR 223 370 -37 1 1595 396 0 0 0 chr4 132445987 132446031 -23184089 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1595 1309 101 17 0 chr4 132446241 132446420 -23183700 + B2_Mm2 SINE B2 2 183 -12 1 1595 1276 89 20 30 chr4 132446453 132446650 -23183470 + B2_Mm2 SINE B2 1 195 0 1 1595 230 267 10 0 chr4 132446971 132447072 -23183048 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 1595 715 161 65 7 chr4 132447080 132447218 -23182902 - RMER19B LTR ERVK 0 902 757 1 1595 1347 82 0 76 chr4 132447218 132447429 -23182691 + B2_Mm2 SINE B2 1 195 0 1 1595 1167 58 0 0 chr4 132447444 132447582 -23182538 + B1_Mus2 SINE Alu 1 138 -9 1 1595 189 0 0 0 chr4 132447582 132447603 -23182517 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1595 320 317 19 19 chr4 132447703 132447809 -23182311 + B1F1 SINE Alu 3 108 -41 1 1595 681 209 101 7 chr4 132447811 132447960 -23182160 + B3 SINE B2 42 204 -12 1 1595 604 257 0 65 chr4 132447978 132448132 -23181988 + ID_B1 SINE B4 81 224 0 1 1595 234 0 0 0 chr4 132448222 132448248 -23181872 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1595 862 186 0 0 chr4 132448302 132448442 -23181678 + B1_Mus2 SINE Alu 8 147 0 1 1595 1559 34 0 6 chr4 132448508 132448688 -23181432 - B2_Mm2 SINE B2 -15 180 2 1 1595 21 82 0 0 chr4 132448710 132448759 -23181361 + AT_rich Low_complexity Low_complexity 1 49 0 1 1595 473 261 84 20 chr4 132448807 132448964 -23181156 - B3A SINE B2 -14 202 38 1 1595 599 213 49 0 chr4 132448986 132449108 -23181012 - B1_Mus1 SINE Alu -20 128 1 1 1595 269 122 0 0 chr4 132449108 132449149 -23180971 - B3A SINE B2 -156 42 2 1 1595 412 250 67 0 chr4 132449338 132449442 -23180678 - PB1D7 SINE Alu -9 111 1 1 1595 928 211 74 67 chr4 132449633 132449902 -23180218 - B4A SINE B4 -21 271 1 1 1595 743 272 66 33 chr4 132449920 132450133 -23179987 - B4 SINE B4 -68 224 5 1 1595 312 292 100 40 chr4 132450174 132450324 -23179796 - LTR65 LTR ERV1 -35 634 476 1 1595 1071 279 52 0 chr4 132450434 132450721 -23179399 - LTR65 LTR ERV1 -201 468 167 1 1595 305 333 69 28 chr4 132450949 132451094 -23179026 - L1ME2 LINE L1 -7 6157 6007 1 1595 374 224 112 78 chr4 132451189 132451200 -23178920 - B1_Mur2 SINE Alu -1 148 138 1 1595 282 73 0 0 chr4 132451200 132451241 -23178879 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1595 374 227 121 76 chr4 132451241 132451363 -23178757 - B1_Mur2 SINE Alu -12 137 1 1 1595 360 238 324 0 chr4 132451578 132451683 -23178437 + B1_Mur2 SINE Alu 2 140 -9 1 1595 1204 135 5 10 chr4 132451831 132452025 -23178095 + B2_Mm1a SINE B2 1 193 0 1 1595 344 252 117 8 chr4 132452124 132452252 -23177868 - B1F2 SINE Alu 0 149 8 1 1595 613 201 256 0 chr4 132452444 132452608 -23177512 + B3 SINE B2 1 206 -10 1 1595 386 213 48 17 chr4 132452626 132452743 -23177377 + B1_Mus1 SINE Alu 7 121 -26 1 1595 442 242 60 10 chr4 132452916 132453016 -23177104 - PB1D10 SINE Alu -3 114 10 1 1595 1580 52 0 0 chr4 132453117 132453310 -23176810 + B2_Mm1a SINE B2 1 193 0 1 1595 467 342 39 7 chr4 132453393 132453546 -23176574 - B3A SINE B2 -3 195 38 1 1595 1019 226 14 9 chr4 132453573 132453783 -23176337 - B3 SINE B2 -5 211 1 1 1595 301 260 137 37 chr4 132453789 132453946 -23176174 + MLT1F LTR MaLR 32 252 -327 1 1595 459 341 81 79 chr4 132454027 132454392 -23175728 + MLT1H1 LTR MaLR 43 407 -148 1 1595 1130 75 0 33 chr4 132454392 132454544 -23175576 - B1_Mus2 SINE Alu 0 147 1 1 1595 459 341 81 79 chr4 132454544 132454559 -23175561 + MLT1H1 LTR MaLR 408 419 -136 1 1595 1634 31 11 0 chr4 132454559 132454750 -23175370 + B2_Mm1a SINE B2 1 193 0 1 1595 459 341 81 79 chr4 132454750 132454877 -23175243 + MLT1H1 LTR MaLR 420 551 -4 1 1595 831 146 88 0 chr4 132457322 132457459 -23172661 + B1_Mur4 SINE Alu 1 149 -1 1 1595 271 254 17 0 chr4 132458284 132458343 -23171777 - PB1 SINE Alu -30 97 38 1 1595 505 200 16 65 chr4 132458437 132458560 -23171560 + PB1D10 SINE Alu 1 117 0 1 1595 235 283 46 23 chr4 132458797 132458927 -23171193 - RSINE1 SINE B4 -21 144 12 1 1595 636 248 23 0 chr4 132458985 132459114 -23171006 - RSINE1 SINE B4 -29 136 5 1 1595 1426 43 37 16 chr4 132459198 132459385 -23170735 - B2_Mm2 SINE B2 -4 191 1 1 1595 1697 16 5 0 chr4 132459489 132459680 -23170440 - B2_Mm1a SINE B2 0 193 2 1 1595 380 178 38 67 chr4 132460447 132460584 -23169536 + B1F SINE Alu 3 150 0 1 1595 247 229 22 98 chr4 132460716 132460808 -23169312 + Charlie4z DNA MER1_type 35 119 -48 1 1595 370 205 13 0 chr4 132461494 132461572 -23168548 - ID4_ SINE ID -2 81 3 1 1595 272 268 14 0 chr4 132461815 132461886 -23168234 + PB1D10 SINE Alu 42 113 -4 1 1595 1295 116 16 0 chr4 132462214 132462404 -23167716 + B2_Mm2 SINE B2 2 194 -1 1 1595 393 255 9 62 chr4 132462567 132462680 -23167440 + B1_Mm SINE Alu 2 108 -39 1 1595 290 211 35 0 chr4 132462675 132462732 -23167388 + U2 snRNA snRNA 1 59 -129 1 1595 339 105 17 50 chr4 132462725 132462785 -23167335 + B1F1 SINE Alu 86 143 -6 1 1595 726 265 30 30 chr4 132463013 132463215 -23166905 + ID_B1 SINE B4 2 203 -21 1 1595 380 258 82 0 chr4 132463278 132463375 -23166745 + U6 snRNA snRNA 1 105 -2 1 1595 24 53 0 0 chr4 132463375 132463413 -23166707 + AT_rich Low_complexity Low_complexity 1 38 0 1 1595 309 273 13 0 chr4 132463430 132463507 -23166613 - ID_B1 SINE B4 -4 220 143 1 1595 1109 77 0 92 chr4 132463505 132463690 -23166430 - B2_Mm2 SINE B2 -1 194 27 1 1595 1194 75 0 0 chr4 132463696 132463842 -23166278 - B1_Mus2 SINE Alu 0 147 2 1 1595 385 207 32 98 chr4 132463858 132463981 -23166139 - PB1D10 SINE Alu 0 117 3 1 1595 427 116 58 0 chr4 132463913 132463982 -23166138 - ID_B1 SINE B4 -69 155 83 1 1595 225 229 209 3 chr4 132464212 132464335 -23165785 + PB1D10 SINE Alu 1 149 0 1 1595 843 142 7 22 chr4 132464357 132464494 -23165626 - B1_Mur3 SINE Alu -13 136 2 1 1595 1122 75 0 14 chr4 132464981 132465129 -23164991 - B1_Mus1 SINE Alu -1 147 2 1 1595 1468 83 0 0 chr4 132465939 132466131 -23163989 + B2_Mm2 SINE B2 1 192 -3 1 1595 528 219 40 0 chr4 132466157 132466265 -23163855 - PB1D9 SINE Alu -1 126 7 1 1595 275 314 71 40 chr4 132466167 132466293 -23163827 - B4 SINE B4 -97 195 66 1 1595 734 217 7 0 chr4 132466278 132466421 -23163699 - B1F SINE Alu 0 149 6 1 1595 284 301 26 97 chr4 132466319 132466433 -23163687 - MT2B LTR ERVL -341 260 155 1 1595 824 200 94 5 chr4 132467188 132467379 -23162741 - B3 SINE B2 -5 211 4 1 1595 1402 80 16 0 chr4 132467577 132467764 -23162356 + B2_Mm1t SINE B2 2 191 -2 1 1595 897 170 0 0 chr4 132467768 132467915 -23162205 - B1_Mur3 SINE Alu 0 149 3 1 1595 189 200 98 16 chr4 132468004 132468065 -23162055 + L2 LINE L2 2431 2496 -923 1 1595 222 200 182 0 chr4 132468251 132468306 -23161814 - B1F SINE Alu -11 138 74 1 1595 396 316 43 37 chr4 132468846 132469010 -23161110 + L2c LINE L2 3222 3386 -1 1 1595 332 301 80 0 chr4 132469902 132470015 -23160105 + B4A SINE B4 73 194 -98 1 1595 809 148 0 0 chr4 132469924 132470046 -23160074 + B1_Mus2 SINE Alu 13 134 -13 1 1595 241 263 0 0 chr4 132470034 132470091 -23160029 - B1F1 SINE Alu -12 137 81 1 1595 1119 68 0 7 chr4 132470129 132470277 -23159843 + B1_Mus2 SINE Alu 1 147 0 1 1595 395 279 155 14 chr4 132470334 132470476 -23159644 - B3 SINE B2 0 216 55 1 1595 252 111 0 0 chr4 132470538 132470583 -23159537 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 1 1595 245 209 99 56 chr4 132470596 132470667 -23159453 + B1_Mur4 SINE Alu 75 148 -2 1 1595 195 42 0 0 chr4 132470667 132470691 -23159429 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1595 247 290 208 8 chr4 132470697 132470822 -23159298 + RSINE1 SINE B4 2 151 -14 1 1595 290 214 252 145 chr4 132470890 132470967 -23159153 + B1_Mur2 SINE Alu 5 112 -37 1 1595 1176 68 7 0 chr4 132470967 132471113 -23159007 + B1_Mus2 SINE Alu 1 147 0 1 1595 290 214 252 145 chr4 132471113 132471140 -23158980 + B1_Mur2 SINE Alu 113 124 -25 1 1595 1363 99 10 10 chr4 132471140 132471334 -23158786 - B2_Mm2 SINE B2 0 195 2 1 1595 290 214 252 145 chr4 132471334 132471359 -23158761 + B1_Mur2 SINE Alu 125 149 0 1 1595 946 204 48 29 chr4 132471371 132471578 -23158542 + B3 SINE B2 6 216 0 1 1595 1022 53 15 0 chr4 132471649 132471781 -23158339 + B1_Mus1 SINE Alu 15 148 0 1 1595 324 229 0 0 chr4 132471938 132472021 -23158099 + GA-rich Low_complexity Low_complexity 2 84 0 1 1595 1262 122 37 0 chr4 132472361 132472549 -23157571 + B2_Mm2 SINE B2 1 195 0 1 1595 1147 75 0 7 chr4 132472553 132472700 -23157420 + B1_Mm SINE Alu 2 147 0 1 1595 31 0 0 0 chr4 132472700 132472731 -23157389 + AT_rich Low_complexity Low_complexity 1 31 0 1 1595 349 143 0 18 chr4 132472827 132472884 -23157236 + ID_B1 SINE B4 167 222 -2 1 1595 390 314 63 19 chr4 132472857 132472894 -23157226 + B4 SINE B4 53 96 -196 1 1595 532 249 130 2 chr4 132472894 132473031 -23157089 + B1_Mus2 SINE Alu 3 144 -6 1 1595 368 272 78 0 chr4 132473236 132473339 -23156781 - B3 SINE B2 -8 208 98 1 1595 1196 48 7 0 chr4 132473340 132473485 -23156635 + B1_Mus2 SINE Alu 1 146 -1 1 1595 317 167 344 0 chr4 132473503 132473599 -23156521 - B2_Mm1t SINE B2 -62 131 2 1 1595 323 274 26 118 chr4 132473851 132474004 -23156116 - B1F SINE Alu -10 139 1 1 1595 404 160 219 48 chr4 132473902 132474007 -23156113 - ID_B1 SINE B4 -23 201 79 1 1595 222 218 18 0 chr4 132474185 132474206 -23155914 - B1_Mur2 SINE Alu -21 128 107 1 1595 3927 45 63 0 chr4 132474206 132474694 -23155426 + MURVY-LTR LTR ERV1 1 519 0 1 1595 222 218 18 0 chr4 132474694 132474727 -23155393 - B1_Mur2 SINE Alu -43 106 74 1 1595 189 0 0 0 chr4 132474749 132474770 -23155350 + (ATG)n Simple_repeat Simple_repeat 3 23 0 1 1595 306 0 0 0 chr4 132474770 132474804 -23155316 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1595 356 258 10 40 chr4 132475169 132475243 -23154877 + B1_Mur4 SINE Alu 12 82 -68 1 1595 379 286 55 80 chr4 132475243 132475278 -23154842 + B3A SINE B2 3 36 -162 1 1595 1205 61 0 0 chr4 132475278 132475426 -23154694 + B1_Mus1 SINE Alu 1 148 0 1 1595 379 286 55 80 chr4 132475426 132475591 -23154529 + B3A SINE B2 37 198 0 1 1595 245 284 60 0 chr4 132475592 132475659 -23154461 + B1_Mur1 SINE Alu 79 149 0 1 1595 1007 68 15 15 chr4 132475662 132475796 -23154324 - B1_Mus1 SINE Alu -13 135 2 1 1595 235 162 51 139 chr4 132475799 132475878 -23154242 - B1_Mus2 SINE Alu 0 147 76 1 1595 570 220 23 8 chr4 132475933 132476066 -23154054 - B1F2 SINE Alu -12 137 3 1 1595 433 254 114 62 chr4 132476072 132476248 -23153872 - B3A SINE B2 0 198 14 1 1595 304 312 12 12 chr4 132476310 132476391 -23153729 + PB1D7 SINE Alu 4 84 -36 1 1595 934 63 8 0 chr4 132476390 132476516 -23153604 + B1_Mm SINE Alu 21 147 0 1 1595 202 130 65 0 chr4 132476565 132476611 -23153509 + A-rich Low_complexity Low_complexity 2 50 0 1 1595 216 0 0 0 chr4 132477061 132477085 -23153035 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1595 1036 83 14 14 chr4 132477086 132477233 -23152887 + B1_Mm SINE Alu 1 147 0 1 1595 311 159 59 129 chr4 132477263 132477364 -23152756 + MT2B LTR ERVL 160 253 -348 1 1595 479 190 9 79 chr4 132477279 132477393 -23152727 + PB1D9 SINE Alu 15 120 0 1 1595 22 35 0 0 chr4 132478372 132478401 -23151719 + GC_rich Low_complexity Low_complexity 1 29 0 1 1595 233 217 0 14 chr4 132478428 132478498 -23151622 + G-rich Low_complexity Low_complexity 2 70 0 1 1595 594 144 181 20 chr4 132478986 132479135 -23150985 + B3A SINE B2 2 174 -24 1 1595 1187 61 90 12 chr4 132479511 132479678 -23150442 + B2_Mm2 SINE B2 1 180 -15 1 1595 419 67 349 48 chr4 132479707 132479816 -23150304 + B2_Mm2 SINE B2 47 186 -9 1 1595 569 262 204 7 chr4 132479801 132479987 -23150133 - B3A SINE B2 -3 213 1 1 1595 598 279 14 0 chr4 132480122 132480262 -23149858 + ID_B1 SINE B4 81 222 -2 1 1595 526 144 0 49 chr4 132480271 132480307 -23149813 + B1_Mur3 SINE Alu 27 62 -87 1 1595 1831 167 19 102 chr4 132480307 132480740 -23149380 - RMER10B LTR ERVL 0 398 2 1 1595 526 144 0 49 chr4 132480740 132480805 -23149315 + B1_Mur3 SINE Alu 63 123 -26 1 1595 198 103 0 0 chr4 132480936 132480965 -23149155 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1595 282 29 0 0 chr4 132481217 132481252 -23148868 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1595 807 192 0 0 chr4 132481258 132481388 -23148732 - B1_Mus1 SINE Alu -18 130 1 1 1595 354 254 231 23 chr4 132481530 132481703 -23148417 + B3 SINE B2 1 209 -7 1 1595 307 274 62 21 chr4 132481733 132481800 -23148320 + B1F2 SINE Alu 42 112 -37 1 1595 742 312 19 10 chr4 132481800 132482007 -23148113 + ID_B1 SINE B4 1 209 -15 1 1595 3636 152 55 28 chr4 132482009 132482650 -23147470 + RMER6A LTR ERVK 3 665 -91 1 1595 1658 47 0 0 chr4 132482650 132482843 -23147277 + B2_Mm1a SINE B2 1 193 0 1 1595 3636 152 55 28 chr4 132482843 132482914 -23147206 + RMER6A LTR ERVK 666 734 -22 1 1595 248 290 120 19 chr4 132482955 132483113 -23147007 - L2 LINE L2 -683 2736 2563 1 1595 378 0 0 0 chr4 132483128 132483170 -23146950 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1595 225 0 0 0 chr4 132483311 132483336 -23146784 + (TTTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1595 892 200 11 11 chr4 132483344 132483526 -23146594 - B3 SINE B2 -6 210 29 1 1595 313 116 0 0 chr4 132483681 132483724 -23146396 - HAL1-3A_ME LINE L1 -840 2018 1976 1 1595 420 224 0 0 chr4 132483727 132483861 -23146259 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1595 858 236 80 0 chr4 132483861 132484060 -23146060 - ID_B1 SINE B4 -2 222 8 1 1595 692 201 112 16 chr4 132484087 132484274 -23145846 - B3 SINE B2 -10 206 2 1 1595 598 224 29 22 chr4 132484680 132484817 -23145303 - B1_Mur1 SINE Alu 0 149 12 1 1595 269 299 66 99 chr4 132484682 132484834 -23145286 - B4 SINE B4 -69 223 77 1 1595 1063 108 0 13 chr4 132484926 132485076 -23145044 + B1_Mus1 SINE Alu 1 148 0 1 1595 414 0 0 0 chr4 132485324 132485370 -23144750 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 1 1595 300 83 0 0 chr4 132485457 132485505 -23144615 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1595 180 0 0 0 chr4 132485551 132485571 -23144549 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1595 519 229 8 0 chr4 132485662 132485780 -23144340 + B1F SINE Alu 26 144 -5 1 1595 295 258 9 126 chr4 132485795 132485906 -23144214 + B1_Mur1 SINE Alu 30 127 -22 1 1595 246 156 186 86 chr4 132486896 132486966 -23143154 - L1M4 LINE L1 -450 5733 5657 1 1595 632 220 114 0 chr4 132486984 132487116 -23143004 - B1_Mur1 SINE Alu -1 148 2 1 1595 369 298 19 0 chr4 132487128 132487232 -23142888 - U6 snRNA snRNA -1 106 1 1 1595 307 346 0 0 chr4 132487234 132487312 -23142808 - PB1D10 SINE Alu -5 112 35 1 1595 342 0 0 0 chr4 132487338 132487376 -23142744 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1 1595 843 184 7 0 chr4 132487386 132487527 -23142593 - B1_Mur2 SINE Alu -7 142 1 1 1595 304 220 35 130 chr4 132487424 132487539 -23142581 - MT2B LTR ERVL -344 257 154 1 1595 425 311 26 13 chr4 132487549 132487702 -23142418 - RSINE1 SINE B4 -9 156 2 1 1595 327 243 12 92 chr4 132487896 132488059 -23142061 - L1M4 LINE L1 -745 5439 5290 1 1595 955 117 198 0 chr4 132488061 132488223 -23141897 - B2_Mm2 SINE B2 -1 194 1 1 1595 1046 80 0 7 chr4 132488225 132488376 -23141744 + (TTTCC)n Simple_repeat Simple_repeat 1 150 0 1 1595 504 0 0 0 chr4 132488385 132488441 -23141679 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 1 1595 1517 162 61 55 chr4 132488448 132488471 -23141649 - ORR1A4 LTR MaLR 0 329 312 1 1595 228 35 0 0 chr4 132488471 132488500 -23141620 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1595 1077 128 0 0 chr4 132488502 132488650 -23141470 - B1_Mus1 SINE Alu 0 148 1 1 1595 1517 162 61 55 chr4 132488650 132488950 -23141170 - ORR1A4 LTR MaLR -18 311 1 1 1595 447 220 80 107 chr4 132488960 132489072 -23141048 - B1_Mur2 SINE Alu -27 122 14 1 1595 961 204 101 32 chr4 132489048 132489353 -23140767 + ORR1D1 LTR MaLR 5 334 -40 1 1595 613 286 31 53 chr4 132489356 132489506 -23140614 - B4A SINE B4 -72 220 72 1 1595 2868 152 78 35 chr4 132489506 132489627 -23140493 - RLTR12A LTR ERVK -4 564 443 1 1595 1721 21 0 0 chr4 132489627 132489820 -23140300 + B2_Mm1a SINE B2 1 193 0 1 1595 2868 152 78 35 chr4 132489820 132489894 -23140226 - RLTR12A LTR ERVK -126 442 375 1 1595 342 45 0 0 chr4 132489894 132489938 -23140182 + (ATG)n Simple_repeat Simple_repeat 2 45 0 1 1595 2868 152 78 35 chr4 132489938 132490281 -23139839 - RLTR12A LTR ERVK -194 374 2 1 1595 613 286 31 53 chr4 132490281 132490355 -23139765 - B4A SINE B4 -221 71 1 1 1595 501 248 17 0 chr4 132490428 132490545 -23139575 - B1F SINE Alu -1 148 30 1 1595 210 313 64 71 chr4 132490429 132490570 -23139550 - B4A SINE B4 -68 224 85 1 1595 273 219 71 24 chr4 132490804 132490888 -23139232 + LTR16D LTR ERVL 564 651 0 1 1595 348 243 26 26 chr4 132491643 132491719 -23138401 + ID4_ SINE ID 2 77 -6 1 1595 342 45 0 0 chr4 132491841 132491885 -23138235 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1595 377 330 0 0 chr4 132491892 132491992 -23138128 + MLT1H LTR MaLR 92 191 -358 1 1595 266 0 0 29 chr4 132492004 132492039 -23138081 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1595 1006 136 0 0 chr4 132492111 132492258 -23137862 - B1_Mur3 SINE Alu -2 147 1 1 1595 966 236 3 4 chr4 132492278 132492489 -23137631 - B3A SINE B2 -6 210 2 1 1595 232 114 0 0 chr4 132492889 132492924 -23137196 + B3 SINE B2 2 36 -180 1 1595 364 304 60 6 chr4 132493478 132493660 -23136460 + ERVL-E-int LTR ERVL 3985 4176 -1491 1 1595 1387 98 0 10 chr4 132493883 132494079 -23136041 + B2_Mm2 SINE B2 2 195 0 1 1595 415 294 14 7 chr4 132494847 132494991 -23135129 + RSINE1 SINE B4 4 148 -17 1 1595 307 140 0 109 chr4 132495070 132495134 -23134986 - B3A SINE B2 -139 59 3 1 1595 180 0 0 0 chr4 132495191 132495211 -23134909 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1 1595 430 218 0 90 chr4 132495214 132495325 -23134795 - PB1D7 SINE Alu -19 101 1 1 1595 675 203 41 27 chr4 132496333 132496480 -23133640 + B1F2 SINE Alu 1 149 0 1 1595 219 225 0 0 chr4 132496633 132496673 -23133447 + ID4 SINE ID 8 47 -36 1 1595 272 366 9 0 chr4 132496683 132496795 -23133325 + (TGG)n Simple_repeat Simple_repeat 1 113 0 1 1595 450 0 0 0 chr4 132497619 132497669 -23132451 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1595 564 180 17 51 chr4 132497989 132498106 -23132014 + PB1D10 SINE Alu 4 116 -1 1 1595 1116 88 0 0 chr4 132498107 132498361 -23131759 + (TG)n Simple_repeat Simple_repeat 1 254 0 1 1595 1092 98 0 0 chr4 132498378 132498843 -23131277 + (TG)n Simple_repeat Simple_repeat 1 465 0 1 1595 219 69 0 0 chr4 132499525 132499554 -23130566 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1595 29 0 0 0 chr4 132499556 132499585 -23130535 + AT_rich Low_complexity Low_complexity 1 29 0 1 1595 799 214 61 52 chr4 132499585 132499643 -23130477 - B3 SINE B2 0 216 165 1 1595 225 0 0 0 chr4 132499643 132499668 -23130452 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1595 799 214 61 52 chr4 132499668 132499821 -23130299 - B3 SINE B2 -52 164 3 1 1595 505 187 75 32 chr4 132499837 132499931 -23130189 - PB1D7 SINE Alu -8 119 22 1 1595 271 333 35 17 chr4 132500018 132500134 -23129986 - L2b LINE L2 -1 3374 3257 1 1595 764 192 27 7 chr4 132500485 132500632 -23129488 - B1_Mur4 SINE Alu 0 150 1 2 1595 442 264 18 0 chr4 132500676 132500786 -23129334 - B3A SINE B2 -86 112 1 3 1595 440 323 69 23 chr4 132500786 132500995 -23129125 - MARNA DNA Mariner -156 430 210 4 1595 233 309 117 16 chr4 132501070 132501198 -23128922 + MIRm SINE MIR 47 187 -89 5 1595 300 188 330 0 chr4 132501264 132501376 -23128744 - B3 SINE B2 -67 149 1 6 1595 292 236 64 11 chr4 132501380 132501474 -23128646 - PB1 SINE Alu -12 115 17 7 1595 235 160 60 0 chr4 132502507 132502557 -23127563 + G-rich Low_complexity Low_complexity 1 53 0 8 1595 279 0 0 0 chr4 132502950 132502981 -23127139 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1595 322 269 37 105 chr4 132503351 132503513 -23126607 - MER5B DNA MER1_type -27 151 1 1 1595 837 133 0 27 chr4 132503556 132503703 -23126417 + B1_Mur4 SINE Alu 8 150 0 1 1595 186 222 0 0 chr4 132503887 132503923 -23126197 - MIR SINE MIR -138 124 89 1 1595 363 102 16 82 chr4 132504301 132504423 -23125697 - B2_Mm2 SINE B2 -6 189 1 1 1595 695 252 101 26 chr4 132504586 132504814 -23125306 + B4A SINE B4 2 246 -46 1 1595 1255 46 28 11 chr4 132504808 132504984 -23125136 + B2_Mm2 SINE B2 8 186 -9 1 1595 248 370 12 0 chr4 132504975 132505056 -23125064 + B4 SINE B4 211 292 0 1 1595 327 275 92 0 chr4 132505073 132505182 -23124938 + PB1D7 SINE Alu 1 119 -1 1 1595 354 271 15 99 chr4 132505331 132505462 -23124658 - PB1D9 SINE Alu 0 120 1 1 1595 828 196 75 16 chr4 132505517 132505704 -23124416 - B3 SINE B2 -18 198 1 1 1595 404 209 11 0 chr4 132505765 132505856 -23124264 - B3A SINE B2 -104 94 3 2 1595 327 245 70 0 chr4 132506473 132506568 -23123552 + PB1D7 SINE Alu 19 119 -1 2 1595 385 189 910 34 chr4 132506609 132506720 -23123400 + ID_B1 SINE B4 2 209 -15 2 1595 276 30 0 0 chr4 132506720 132506753 -23123367 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 1595 591 179 25 8 chr4 132507584 132507702 -23122418 - PB1D9 SINE Alu 0 120 1 2 1595 1295 108 0 40 chr4 132507964 132508166 -23121954 - B2_Mm2 SINE B2 -1 194 1 2 1595 385 200 44 11 chr4 132508372 132508463 -23121657 + PB1D9 SINE Alu 16 109 -11 2 1595 267 31 0 0 chr4 132508463 132508495 -23121625 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1595 587 162 8 59 chr4 132508577 132508695 -23121425 - PB1D9 SINE Alu 0 120 9 2 1595 330 246 0 14 chr4 132508638 132508708 -23121412 - B4 SINE B4 -142 150 82 2 1595 282 160 0 0 chr4 132508715 132508765 -23121355 + CT-rich Low_complexity Low_complexity 2 51 0 3 1595 351 341 30 8 chr4 132508768 132508901 -23121219 - B1_Mur1 SINE Alu -1 148 13 3 1595 182 376 50 63 chr4 132508909 132509068 -23121052 + L2b LINE L2 3219 3375 0 3 1595 33 0 0 0 chr4 132509122 132509155 -23120965 + AT_rich Low_complexity Low_complexity 1 33 0 3 1595 1023 107 0 13 chr4 132509165 132509316 -23120804 + B1_Mur4 SINE Alu 2 150 0 3 1595 831 180 0 0 chr4 132509322 132509461 -23120659 - B1_Mur1 SINE Alu -2 147 9 3 1595 339 254 91 115 chr4 132509360 132509569 -23120551 - MT2B LTR ERVL -338 263 60 3 1595 417 235 71 64 chr4 132509512 132509653 -23120467 - B3A SINE B2 -55 143 2 3 1595 899 158 6 0 chr4 132509787 132509952 -23120168 + CT-rich Low_complexity Low_complexity 1 166 0 3 1595 845 194 6 28 chr4 132509952 132510132 -23119988 - B2_Mm2 SINE B2 -19 176 1 3 1595 766 115 0 9 chr4 132510149 132510263 -23119857 - B3 SINE B2 -103 113 1 4 1595 225 333 0 0 chr4 132510282 132510357 -23119763 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 4 1595 231 269 0 0 chr4 132510283 132510335 -23119785 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1595 547 287 96 17 chr4 132510363 132510540 -23119580 - B4A SINE B4 -20 272 82 4 1595 636 192 72 40 chr4 132510539 132510691 -23119429 - ID_B1 SINE B4 -67 157 1 4 1595 289 271 178 0 chr4 132511118 132511225 -23118895 + L2 LINE L2 2785 2910 -509 4 1595 279 0 0 0 chr4 132511415 132511446 -23118674 + (TCC)n Simple_repeat Simple_repeat 1 31 0 4 1595 186 227 0 0 chr4 132511628 132511672 -23118448 + GA-rich Low_complexity Low_complexity 3 46 0 4 1595 274 274 158 0 chr4 132511697 132511792 -23118328 + ID_B1 SINE B4 102 211 -13 4 1595 453 361 79 77 chr4 132512111 132512720 -23117400 + L1M5 LINE L1 4781 5390 -756 4 1595 279 197 49 0 chr4 132512799 132512860 -23117260 + B1F SINE Alu 81 144 -5 5 1595 322 167 0 0 chr4 132512807 132512861 -23117259 + ID_B1 SINE B4 167 220 -4 5 1595 263 205 132 0 chr4 132512938 132513021 -23117099 + B3 SINE B2 122 215 -1 5 1595 1200 109 16 0 chr4 132513486 132513670 -23116450 + B2_Mm2 SINE B2 1 187 -8 5 1595 298 266 0 12 chr4 132513701 132513781 -23116339 + ID4_ SINE ID 3 81 -2 5 1596 578 141 20 10 chr4 132513812 132513912 -23116208 + B1_Mur4 SINE Alu 2 102 -48 5 1596 219 139 0 0 chr4 132513912 132513948 -23116172 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1596 1197 48 0 0 chr4 132513959 132514106 -23116014 + B1_Mus2 SINE Alu 1 147 0 5 1596 1579 26 0 5 chr4 132514121 132514313 -23115807 + B2_Mm1a SINE B2 1 191 -2 5 1596 1325 78 0 6 chr4 132514314 132514495 -23115625 - B2_Mm2 SINE B2 -14 181 2 5 1596 315 98 39 0 chr4 132514497 132514548 -23115572 + B1_Mur2 SINE Alu 95 147 -2 6 1596 186 43 0 0 chr4 132514755 132514778 -23115342 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1596 240 274 0 0 chr4 132515829 132515891 -23114229 - ID4 SINE ID 0 83 22 6 1596 196 251 24 35 chr4 132515940 132516009 -23114111 + MIR SINE MIR 90 158 -110 6 1596 200 422 6 17 chr4 132516030 132516206 -23113914 + (TG)n Simple_repeat Simple_repeat 1 174 0 6 1596 508 264 144 16 chr4 132516265 132516508 -23113612 - B4 SINE B4 -18 274 1 6 1596 366 277 20 0 chr4 132516641 132516742 -23113378 - MIRm SINE MIR -100 176 74 6 1596 483 231 29 0 chr4 132517659 132517763 -23112357 + PB1D7 SINE Alu 1 107 -13 6 1596 624 146 0 60 chr4 132518277 132518296 -23111824 - B1_Mus2 SINE Alu 0 147 135 6 1596 252 0 0 0 chr4 132518296 132518324 -23111796 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 1596 624 146 0 60 chr4 132518324 132518421 -23111699 - B1_Mus2 SINE Alu -13 134 38 6 1596 240 229 11 88 chr4 132518342 132518433 -23111687 - RLTR25B LTR ERVK -516 512 429 7 1596 272 158 0 17 chr4 132518433 132518491 -23111629 + CT-rich Low_complexity Low_complexity 2 58 0 7 1596 1274 120 5 0 chr4 132518497 132518688 -23111432 - B2_Mm1a SINE B2 0 193 2 7 1596 745 162 22 7 chr4 132518922 132519059 -23111061 - B1_Mur4 SINE Alu -1 149 11 7 1596 1170 54 0 0 chr4 132519081 132519228 -23110892 - B1_Mus2 SINE Alu 0 147 1 7 1596 295 176 20 0 chr4 132519252 132519303 -23110817 + B1_Mur4 SINE Alu 3 54 -96 7 1596 364 260 18 88 chr4 132519296 132519410 -23110710 - RSINE1 SINE B4 -46 119 14 7 1596 505 286 30 0 chr4 132519856 132519989 -23110131 + B1F SINE Alu 1 137 -12 7 1596 330 139 0 0 chr4 132520013 132520085 -23110035 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1596 495 144 121 20 chr4 132520088 132520187 -23109933 - B1_Mur4 SINE Alu -1 149 41 7 1596 528 145 43 2 chr4 132520188 132520287 -23109833 + B1_Mur2 SINE Alu 23 136 -13 8 1596 246 62 0 0 chr4 132520287 132520319 -23109801 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1596 528 136 11 0 chr4 132520319 132520331 -23109789 + B1_Mur2 SINE Alu 137 148 -1 8 1596 247 209 242 0 chr4 132520415 132520506 -23109614 + PB1D10 SINE Alu 5 117 0 8 1596 1143 50 0 0 chr4 132521150 132521290 -23108830 - B1_Mus2 SINE Alu -6 141 2 8 1596 246 232 43 0 chr4 132521294 132521363 -23108757 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 8 1596 214 172 84 21 chr4 132521401 132521496 -23108624 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 8 1596 1150 48 7 0 chr4 132521552 132521698 -23108422 - B1_Mus1 SINE Alu 0 148 2 8 1596 335 208 19 31 chr4 132521715 132521874 -23108246 + (TATG)n Simple_repeat Simple_repeat 2 158 0 8 1596 523 189 104 0 chr4 132521895 132522001 -23108119 - B1_Mur1 SINE Alu 0 149 33 8 1596 340 285 27 34 chr4 132522041 132522190 -23107930 - B1F2 SINE Alu 0 149 2 8 1596 599 71 12 0 chr4 132522254 132522339 -23107781 + (TTTTC)n Simple_repeat Simple_repeat 3 88 0 8 1596 1273 96 32 5 chr4 132522350 132522538 -23107582 - B2_Mm2 SINE B2 0 195 3 9 1596 605 49 12 0 chr4 132522578 132522659 -23107461 + (TTTTC)n Simple_repeat Simple_repeat 3 84 0 9 1596 1114 37 0 0 chr4 132522660 132522794 -23107326 - B1_Mus1 SINE Alu -13 135 2 9 1596 279 0 0 0 chr4 132522842 132522873 -23107247 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1596 454 292 29 75 chr4 132523004 132523178 -23106942 - B4A SINE B4 -122 170 5 9 1596 320 239 0 43 chr4 132523190 132523260 -23106860 - ID_B1 SINE B4 0 224 158 9 1596 873 262 31 12 chr4 132523386 132523641 -23106479 - MER58B DNA MER1_type -8 333 74 9 1596 404 284 8 25 chr4 132523646 132523765 -23106355 + RSINE1 SINE B4 2 118 -47 9 1596 773 131 45 23 chr4 132523826 132523959 -23106161 + B1_Mur3 SINE Alu 3 138 -11 9 1596 479 60 15 0 chr4 132523959 132524026 -23106094 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 9 1596 370 305 0 21 chr4 132524051 132524148 -23105972 + PB1 SINE Alu 22 116 -11 1 1596 570 297 40 62 chr4 132524468 132524741 -23105379 + MLT1A LTR MaLR 54 320 -54 1 1596 930 109 13 13 chr4 132524814 132524963 -23105157 - B1_Mur3 SINE Alu 0 149 1 1 1596 342 0 0 0 chr4 132524975 132525013 -23105107 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1596 471 245 59 0 chr4 132525019 132525121 -23104999 - RSINE1 SINE B4 -57 108 1 1 1596 265 59 0 81 chr4 132525126 132525200 -23104920 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 1 1596 1175 54 0 0 chr4 132525200 132525347 -23104773 - B1_Mus2 SINE Alu 0 147 1 1 1596 400 261 49 56 chr4 132525459 132525601 -23104519 - ID_B1 SINE B4 0 224 84 1 1596 259 284 13 26 chr4 132525642 132525718 -23104402 - ID2 SINE ID 0 83 9 1 1596 1109 89 0 0 chr4 132526038 132526184 -23103936 - B1_Mm SINE Alu 0 147 2 1 1596 903 181 6 0 chr4 132526250 132526421 -23103699 + RMER1B Other Other 695 866 -200 1 1596 750 181 19 39 chr4 132526421 132526576 -23103544 + B2_Mm2 SINE B2 36 187 -8 1 1596 968 142 45 55 chr4 132526576 132526777 -23103343 + RMER1B Other Other 857 1055 -11 1 1596 404 160 42 109 chr4 132526781 132526900 -23103220 + MT2B LTR ERVL 154 264 -337 1 1596 808 137 8 0 chr4 132526793 132526924 -23103196 + B1_Mur4 SINE Alu 8 139 -11 1 1596 420 297 144 0 chr4 132526995 132527113 -23103007 + RSINE1 SINE B4 2 136 -29 1 1596 390 159 0 0 chr4 132527165 132527234 -23102886 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1596 921 113 0 7 chr4 132527635 132527777 -23102343 - B2_Mm2 SINE B2 -54 141 1 1 1596 198 290 98 45 chr4 132528082 132528194 -23101926 - MIR SINE MIR -123 139 22 1 1596 203 239 0 21 chr4 132528397 132528444 -23101676 + CT-rich Low_complexity Low_complexity 3 48 0 1 1596 308 306 81 34 chr4 132528445 132528594 -23101526 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1596 863 147 0 7 chr4 132528926 132529063 -23101057 - B1_Mur4 SINE Alu -1 149 14 1 1596 195 203 88 59 chr4 132529687 132529755 -23100365 + MIR SINE MIR 75 144 -118 1 1596 262 304 46 56 chr4 132531320 132531332 -23098788 + ID_B1 SINE B4 65 171 -53 1 1596 366 301 0 31 chr4 132531332 132531428 -23098692 + B1F SINE Alu 1 93 -56 1 1596 225 211 0 37 chr4 132531468 132531522 -23098598 + G-rich Low_complexity Low_complexity 1 52 0 1 1596 351 0 0 0 chr4 132532206 132532245 -23097875 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1596 849 129 30 8 chr4 132532254 132532387 -23097733 - B1_Mur4 SINE Alu -9 141 6 1 1596 757 212 0 0 chr4 132532397 132532544 -23097576 - B1_Mur1 SINE Alu -1 148 2 1 1596 468 128 0 0 chr4 132533966 132534044 -23096076 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1596 351 44 0 0 chr4 132534206 132534251 -23095869 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1 1596 1229 77 54 11 chr4 132534262 132534447 -23095673 - B2_Mm1a SINE B2 0 193 1 1 1596 956 110 0 33 chr4 132534449 132534600 -23095520 - B1_Mus2 SINE Alu 0 147 2 1 1596 221 280 107 0 chr4 132534630 132534705 -23095415 + ID4_ SINE ID 1 83 0 1 1596 584 185 65 0 chr4 132534860 132534968 -23095152 + RSINE1 SINE B4 10 124 -41 1 1596 213 65 0 0 chr4 132534968 132534999 -23095121 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1596 1162 41 7 0 chr4 132535013 132535159 -23094961 + B1_Mus1 SINE Alu 1 147 -1 1 1596 226 291 11 102 chr4 132535592 132535680 -23094440 - B4A SINE B4 -1 291 212 1 1596 560 83 71 0 chr4 132535693 132535777 -23094343 + BC1_Mm scRNA scRNA 2 91 -61 1 1596 695 151 230 67 chr4 132535802 132535980 -23094140 + B3 SINE B2 5 211 -5 1 1596 1113 88 0 0 chr4 132535983 132536130 -23093990 + B1_Mus2 SINE Alu 1 147 0 1 1596 875 214 28 6 chr4 132536148 132536327 -23093793 - B3 SINE B2 0 216 34 1 1596 401 257 216 32 chr4 132536342 132536527 -23093593 - B4A SINE B4 -66 226 8 1 1596 263 310 0 0 chr4 132536558 132536629 -23093491 - ID4 SINE ID -8 75 5 1 1596 200 61 61 0 chr4 132536665 132536698 -23093422 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 1 1596 235 252 8 86 chr4 132536706 132536736 -23093384 - BC1_Mm scRNA scRNA -21 131 101 1 1596 1225 34 0 0 chr4 132536736 132536884 -23093236 - B1_Mus1 SINE Alu 0 148 1 1 1596 245 210 2 122 chr4 132536884 132536970 -23093150 - ID4_ SINE ID -52 100 24 1 1596 305 330 26 52 chr4 132536975 132537090 -23093030 - PB1D10 SINE Alu -31 118 7 1 1596 254 316 20 10 chr4 132537001 132537100 -23093020 - ID_B1 SINE B4 -48 176 77 1 1596 381 300 9 9 chr4 132537201 132537312 -23092808 + MER63D DNA AcHobo 276 386 -675 1 1596 300 53 0 0 chr4 132537318 132537356 -23092764 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1596 183 209 23 23 chr4 132538073 132538117 -23092003 + MIRm SINE MIR 89 132 -144 1 1596 240 35 0 0 chr4 132539084 132539113 -23091007 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 1 1596 1192 20 7 0 chr4 132539443 132539589 -23090531 + B1_Mus2 SINE Alu 1 147 0 1 1596 222 37 0 0 chr4 132539589 132539616 -23090504 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1596 396 0 0 0 chr4 132540432 132540476 -23089644 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1596 618 39 0 0 chr4 132540476 132540553 -23089567 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1596 180 200 0 0 chr4 132540562 132540602 -23089518 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1596 905 257 29 0 chr4 132540672 132540882 -23089238 - ID_B1 SINE B4 -1 223 8 1 1596 204 40 0 0 chr4 132540928 132540953 -23089167 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1596 1010 215 15 5 chr4 132541069 132541275 -23088845 + B3 SINE B2 3 210 -6 1 1596 288 54 25 75 chr4 132541283 132541315 -23088805 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1596 1111 70 0 0 chr4 132541315 132541457 -23088663 + B1_Mus2 SINE Alu 1 142 -5 1 1596 288 54 25 75 chr4 132541457 132541504 -23088616 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 1 1596 597 277 7 0 chr4 132541506 132541654 -23088466 + B1_Mur3 SINE Alu 1 149 0 1 1596 389 245 53 0 chr4 132541658 132541752 -23088368 + ID_B1 SINE B4 111 209 -15 1 1596 303 28 0 0 chr4 132541960 132541996 -23088124 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1596 266 0 29 0 chr4 132542503 132542537 -23087583 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 1 1596 245 223 20 50 chr4 132542580 132542679 -23087441 + (TCTCTG)n Simple_repeat Simple_repeat 1 96 0 1 1596 435 118 0 0 chr4 132542680 132542765 -23087355 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 1596 303 301 9 72 chr4 132543669 132543780 -23086340 + RSINE1 SINE B4 16 119 -46 1 1596 1331 89 11 0 chr4 132543784 132543975 -23086145 - B2_Mm1t SINE B2 0 193 1 1 1596 830 87 0 73 chr4 132544049 132544186 -23085934 + B1_Mur4 SINE Alu 5 131 -19 1 1596 258 32 0 0 chr4 132544196 132544227 -23085893 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1596 1087 100 0 0 chr4 132544816 132544966 -23085154 + B1_Mur4 SINE Alu 1 150 0 1 1596 597 185 66 16 chr4 132545079 132545200 -23084920 + B1_Mus1 SINE Alu 22 148 0 1 1596 365 304 0 0 chr4 132545203 132545295 -23084825 - MIR SINE MIR -127 135 44 1 1596 322 346 67 0 chr4 132545541 132545645 -23084475 + B3A SINE B2 65 175 -23 1 1596 324 0 0 0 chr4 132545658 132545694 -23084426 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1596 925 99 28 14 chr4 132545720 132545864 -23084256 - B1_Mus1 SINE Alu -1 147 2 1 1596 910 176 59 21 chr4 132545895 132546081 -23084039 + B2_Mm2 SINE B2 2 194 -1 1 1596 270 81 0 0 chr4 132546081 132546118 -23084002 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 1 1596 1278 64 43 5 chr4 132546141 132546307 -23083813 + B2_Mm2 SINE B2 1 168 -27 1 1596 1027 68 0 52 chr4 132546307 132546462 -23083658 + B1_Mus2 SINE Alu 1 147 0 1 1596 1278 64 43 5 chr4 132546462 132546483 -23083637 + B2_Mm2 SINE B2 169 194 -1 1 1596 1795 179 28 109 chr4 132546669 132547127 -23082993 - MTC LTR MaLR 0 421 1 1 1596 667 286 0 7 chr4 132547930 132548085 -23082035 + RSINE1 SINE B4 12 165 0 1 1596 777 241 21 5 chr4 132548136 132548324 -23081796 + B3 SINE B2 1 191 -25 1 1596 225 250 27 54 chr4 132548581 132548729 -23081391 + G-rich Low_complexity Low_complexity 4 147 0 1 1596 351 0 0 0 chr4 132548747 132548786 -23081334 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1596 320 323 137 44 chr4 132548855 132549082 -23081038 + MIR SINE MIR 15 262 0 1 1596 712 199 43 0 chr4 132549177 132549318 -23080802 - B1_Mur3 SINE Alu 0 149 3 1 1596 197 216 0 0 chr4 132549768 132549805 -23080315 + MIRc SINE MIR 112 148 -120 1 1596 492 211 80 0 chr4 132549899 132550008 -23080112 - PB1D9 SINE Alu -1 119 3 1 1596 332 274 51 31 chr4 132549920 132550018 -23080102 - ID_B1 SINE B4 -48 176 77 1 1596 746 141 70 49 chr4 132550022 132550164 -23079956 - B1_Mur3 SINE Alu 0 149 5 1 1596 697 143 34 0 chr4 132550177 132550296 -23079824 - B1_Mur1 SINE Alu -1 148 26 1 1596 277 280 16 85 chr4 132550183 132550312 -23079808 - MT2B LTR ERVL -316 285 166 1 1596 194 210 23 16 chr4 132550416 132550484 -23079636 - MIRc SINE MIR -80 188 117 1 1596 531 238 0 39 chr4 132551222 132551349 -23078771 - RSINE1 SINE B4 -43 122 1 1 1596 258 132 0 0 chr4 132551389 132551442 -23078678 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1596 560 277 7 21 chr4 132551442 132551582 -23078538 - RSINE1 SINE B4 -27 138 1 1 1596 1146 107 146 10 chr4 132551626 132551825 -23078295 - URR1A DNA MER1_type 0 226 1 1 1596 724 86 198 0 chr4 132552391 132552507 -23077613 - B1_Mus1 SINE Alu -6 142 4 1 1596 204 67 0 0 chr4 132552517 132552547 -23077573 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2 1596 237 288 40 48 chr4 132552590 132552601 -23077519 - B1_Mus2 SINE Alu -20 127 117 2 1596 216 0 0 0 chr4 132552601 132552625 -23077495 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 1596 237 288 40 48 chr4 132552625 132552639 -23077481 - B1_Mus2 SINE Alu -31 116 102 2 1596 1432 57 16 5 chr4 132552639 132552832 -23077288 + B2_Mm2 SINE B2 1 195 0 2 1596 321 227 56 47 chr4 132552832 132552929 -23077191 - B1F SINE Alu -46 101 5 2 1596 248 292 15 84 chr4 132552843 132552974 -23077146 - ID_B1 SINE B4 -55 169 48 2 1596 215 319 85 0 chr4 132554569 132554663 -23075457 + MIR SINE MIR 47 148 -114 2 1596 1372 74 16 0 chr4 132554692 132554881 -23075239 + B2_Mm2 SINE B2 4 195 0 2 1596 1140 81 0 0 chr4 132554881 132555028 -23075092 + B1_Mus1 SINE Alu 1 148 0 2 1596 267 103 0 0 chr4 132555029 132555068 -23075052 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2 1596 1293 46 109 0 chr4 132555116 132555290 -23074830 - B2_Mm1a SINE B2 0 193 1 2 1596 221 299 39 13 chr4 132555507 132555585 -23074535 + ID4 SINE ID 1 80 -3 2 1596 212 204 0 20 chr4 132556497 132556547 -23073573 - MIR3 SINE MIR -48 160 112 2 1596 629 238 0 30 chr4 132557808 132557942 -23072178 - ID_B1 SINE B4 -12 212 83 2 1596 694 206 7 0 chr4 132557942 132558083 -23072037 + B1F2 SINE Alu 7 148 -1 2 1596 229 294 52 52 chr4 132558191 132558288 -23071832 - MIR SINE MIR -74 134 38 2 1596 839 168 247 6 chr4 132558469 132558643 -23071477 + B3 SINE B2 1 216 0 2 1596 290 323 10 48 chr4 132558856 132558960 -23071160 + MIRb SINE MIR 63 162 -106 2 1596 209 310 115 0 chr4 132558981 132559068 -23071052 - MIRb SINE MIR -10 258 162 2 1596 321 26 0 0 chr4 132559120 132559158 -23070962 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1596 239 286 0 0 chr4 132559190 132559239 -23070881 - B1F1 SINE Alu -99 50 2 2 1596 271 283 43 11 chr4 132559757 132559850 -23070270 - MamRep605 Unknown Unknown -742 134 39 2 1596 294 322 107 27 chr4 132559872 132560022 -23070098 - MIRb SINE MIR -56 212 51 2 1596 667 298 31 10 chr4 132560132 132560296 -23069824 + B3A SINE B2 1 170 -28 2 1596 243 88 0 0 chr4 132560296 132560330 -23069790 + (CATG)n Simple_repeat Simple_repeat 3 36 0 2 1596 667 298 31 10 chr4 132560330 132560358 -23069762 + B3A SINE B2 171 197 -1 2 1596 286 179 14 69 chr4 132560433 132560444 -23069676 - PB1D10 SINE Alu -2 115 108 2 1596 192 77 0 0 chr4 132560444 132560470 -23069650 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1596 286 179 14 69 chr4 132560470 132560530 -23069590 - PB1D10 SINE Alu -10 107 48 2 1596 208 314 32 55 chr4 132560638 132560805 -23069315 - L2c LINE L2 -269 3118 2954 2 1596 223 97 0 0 chr4 132560807 132560838 -23069282 - B1_Mus2 SINE Alu -116 31 1 2 1596 1022 65 58 0 chr4 132560838 132560992 -23069128 + B2_Mm2 SINE B2 33 195 0 2 1596 1142 95 0 0 chr4 132561000 132561148 -23068972 + B1_Mus1 SINE Alu 1 148 0 2 1596 288 200 0 0 chr4 132561571 132561636 -23068484 + T-rich Low_complexity Low_complexity 1 65 0 2 1596 1201 54 0 13 chr4 132561638 132561787 -23068333 - B1_Mus1 SINE Alu 0 148 2 2 1596 712 213 0 7 chr4 132561791 132561933 -23068187 - B1_Mur4 SINE Alu 0 150 10 2 1596 370 171 15 159 chr4 132561826 132561958 -23068162 - MT2B LTR ERVL -336 265 153 2 1596 340 213 19 105 chr4 132561994 132562099 -23068021 + PB1D9 SINE Alu 23 118 -2 2 1596 342 67 0 0 chr4 132562127 132562172 -23067948 + B3 SINE B2 2 46 -170 2 1596 1674 36 0 0 chr4 132562189 132562381 -23067739 + B2_Mm1a SINE B2 2 193 0 2 1596 621 36 60 0 chr4 132562450 132562534 -23067586 + B2_Mm2 SINE B2 49 137 -58 2 1596 225 32 0 0 chr4 132562534 132562565 -23067555 - B3 SINE B2 -183 33 3 2 1596 222 263 0 34 chr4 132562609 132562668 -23067452 + PB1D10 SINE Alu 55 111 -6 2 1596 601 276 0 7 chr4 132562700 132562846 -23067274 + ID_B1 SINE B4 80 224 0 2 1596 351 30 0 55 chr4 132562881 132562943 -23067177 + B1_Mus2 SINE Alu 89 147 0 2 1596 189 0 0 0 chr4 132562943 132562964 -23067156 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1596 228 24 0 68 chr4 132562971 132563015 -23067105 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 2 1596 1058 36 0 0 chr4 132563021 132563158 -23066962 + B1_Mm SINE Alu 11 147 0 2 1596 261 0 0 0 chr4 132563391 132563420 -23066700 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1596 231 239 129 114 chr4 132563547 132563679 -23066441 - B1F SINE Alu -1 148 15 2 1596 1232 41 7 0 chr4 132564596 132564743 -23065377 - B1_Mus1 SINE Alu 0 148 1 2 1596 224 299 60 113 chr4 132564765 132564795 -23065325 - B4A SINE B4 -51 241 217 2 1596 303 28 0 0 chr4 132564795 132564831 -23065289 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2 1596 574 247 10 3 chr4 132564831 132564952 -23065168 - ID_B1 SINE B4 -76 216 94 2 1596 274 232 0 0 chr4 132567475 132567575 -23062545 + GA-rich Low_complexity Low_complexity 1 100 0 2 1596 239 79 26 0 chr4 132567638 132567676 -23062444 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 2 1596 210 273 0 15 chr4 132567749 132567779 -23062341 + polypurine Low_complexity Low_complexity 6 35 0 2 1596 237 65 0 0 chr4 132567779 132567810 -23062310 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1596 210 273 0 15 chr4 132567810 132567846 -23062274 + polypurine Low_complexity Low_complexity 36 70 0 2 1596 266 87 0 21 chr4 132568407 132568454 -23061666 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 2 1596 327 25 0 0 chr4 132571119 132571159 -23058961 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1596 216 0 0 0 chr4 132571159 132571183 -23058937 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1596 254 272 56 37 chr4 132572065 132572172 -23057948 - MIR SINE MIR -68 140 32 2 1596 203 88 0 29 chr4 132572303 132572338 -23057782 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2 1596 372 133 0 0 chr4 132573559 132573619 -23056501 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1596 256 268 23 23 chr4 132573658 132573746 -23056374 + (CAGA)n Simple_repeat Simple_repeat 1 88 0 2 1596 252 289 20 10 chr4 132573768 132573866 -23056254 + GA-rich Low_complexity Low_complexity 2 100 0 2 1596 339 25 0 0 chr4 132573877 132573917 -23056203 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1596 326 289 0 35 chr4 132574718 132574804 -23055316 + ID4_ SINE ID 1 83 0 2 1596 375 169 0 0 chr4 132574888 132574959 -23055161 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1596 290 53 70 0 chr4 132574959 132575016 -23055104 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1596 219 69 0 0 chr4 132575231 132575260 -23054860 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1596 180 0 0 0 chr4 132576857 132576877 -23053243 + (C)n Simple_repeat Simple_repeat 1 20 0 2 1596 189 329 79 0 chr4 132578879 132578955 -23051165 - MIR3 SINE MIR -46 162 81 2 1596 540 289 144 5 chr4 132579729 132579931 -23050189 - MIR SINE MIR -22 240 11 2 1596 294 239 11 0 chr4 132581824 132581912 -23048208 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1596 467 248 35 0 chr4 132583675 132583788 -23046332 - PB1D9 SINE Alu -3 117 1 2 1596 261 286 16 0 chr4 132583788 132583846 -23046274 - B1F SINE Alu -10 139 81 2 1596 223 296 0 78 chr4 132584195 132584272 -23045848 - L2b LINE L2 -19 3356 3286 2 1596 289 233 72 72 chr4 132585808 132585933 -23044187 - MIRc SINE MIR -84 184 60 2 1596 268 281 0 58 chr4 132586166 132586253 -23043867 - ID4_ SINE ID -1 82 1 2 1596 358 300 139 39 chr4 132586338 132586618 -23043502 + MER44D DNA MER2_type 3 318 -21 2 1596 216 0 0 0 chr4 132586618 132586642 -23043478 + (AGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 1596 297 321 174 58 chr4 132586642 132586655 -23043465 + MER44A DNA MER2_type 319 330 -9 2 1596 255 281 56 11 chr4 132587202 132587292 -23042828 + MIRb SINE MIR 105 198 -70 2 1596 710 284 15 35 chr4 132587460 132587657 -23042463 + B3A SINE B2 1 193 -5 2 1596 182 268 81 40 chr4 132587690 132587764 -23042356 + MIR SINE MIR 129 205 -57 2 1596 260 238 83 0 chr4 132588002 132588086 -23042034 - MIRc SINE MIR -98 170 80 2 1596 1086 115 0 0 chr4 132588174 132588339 -23041781 + (TCCC)n Simple_repeat Simple_repeat 4 168 0 2 1596 536 241 52 8 chr4 132588339 132588473 -23041647 - B1_Mus1 SINE Alu -8 140 1 2 1596 248 281 72 12 chr4 132588690 132588773 -23041347 - PB1D7 SINE Alu -32 88 1 2 1596 181 256 0 0 chr4 132589094 132589137 -23040983 + MIR SINE MIR 3 45 -217 2 1596 566 228 17 17 chr4 132589361 132589477 -23040643 + PB1D10 SINE Alu 2 117 0 2 1596 219 103 0 0 chr4 132589606 132589645 -23040475 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 2 1596 1275 20 7 0 chr4 132589645 132589791 -23040329 - B1_Mus2 SINE Alu 0 147 1 2 1596 1126 100 0 20 chr4 132589828 132589981 -23040139 - B1_Mur4 SINE Alu 0 150 1 2 1596 435 277 0 18 chr4 132589984 132590098 -23040022 - PB1D7 SINE Alu -7 113 2 2 1596 231 274 94 10 chr4 132590950 132591046 -23039074 - Charlie4z DNA MER1_type -6 161 58 2 1596 180 0 0 0 chr4 132591649 132591669 -23038451 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 2 1596 761 227 129 5 chr4 132591927 132592113 -23038007 - MER58A DNA MER1_type -15 209 1 2 1596 500 310 14 7 chr4 132592229 132592372 -23037748 + B1F SINE Alu 1 144 -5 2 1596 276 252 222 0 chr4 132592690 132592706 -23037414 - B4A SINE B4 -46 246 155 2 1596 565 176 28 9 chr4 132592706 132592815 -23037305 - PB1D9 SINE Alu -1 119 9 2 1596 228 184 0 0 chr4 132592855 132592893 -23037227 - B1F1 SINE Alu -97 52 15 2 1596 459 324 132 0 chr4 132592907 132593120 -23037000 - MER33 DNA MER1_type -67 257 17 2 1596 24 32 0 0 chr4 132593679 132593710 -23036410 + GC_rich Low_complexity Low_complexity 1 31 0 2 1596 182 196 152 0 chr4 132594063 132594109 -23036011 + MIRm SINE MIR 85 137 -139 3 1596 21 57 0 0 chr4 132595341 132595376 -23034744 + GC_rich Low_complexity Low_complexity 1 35 0 3 1596 804 21 0 0 chr4 132595728 132595822 -23034298 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 3 1596 612 195 18 0 chr4 132596853 132596966 -23033154 + PB1D9 SINE Alu 5 119 -1 3 1596 846 200 0 13 chr4 132597424 132597576 -23032544 + B1_Mur4 SINE Alu 1 150 0 3 1596 255 316 87 9 chr4 132597651 132597766 -23032354 + MIR3 SINE MIR 81 204 -4 3 1596 207 69 0 0 chr4 132597990 132598019 -23032101 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1596 387 0 0 0 chr4 132599997 132600040 -23030080 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1596 271 275 58 0 chr4 132601524 132601593 -23028527 + ID4 SINE ID 10 82 -1 3 1596 276 130 0 0 chr4 132604253 132604299 -23025821 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1596 262 335 10 31 chr4 132606149 132606275 -23023845 - MIR3 SINE MIR -154 122 2 3 1596 221 311 19 10 chr4 132607923 132608027 -23022093 + (TCTCTG)n Simple_repeat Simple_repeat 1 105 0 3 1596 387 0 0 0 chr4 132608677 132608720 -23021400 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1596 296 256 51 0 chr4 132609511 132609589 -23020531 - ID4 SINE ID 0 83 2 3 1596 619 214 70 14 chr4 132609864 132610006 -23020114 + B1_Mur4 SINE Alu 1 150 0 3 1596 829 196 20 12 chr4 132610341 132610521 -23019599 + B3 SINE B2 1 192 -6 3 1596 733 202 35 17 chr4 132610550 132610731 -23019389 - B3 SINE B2 0 198 2 3 1596 1600 47 5 0 chr4 132612913 132613105 -23017015 + B2_Mm1a SINE B2 1 193 0 3 1596 485 168 57 38 chr4 132614022 132614127 -23015993 - B1_Mur2 SINE Alu -9 140 34 3 1596 477 272 47 16 chr4 132614198 132614325 -23015795 + B1F2 SINE Alu 3 133 -16 3 1596 632 336 13 12 chr4 132614343 132614569 -23015551 + ID_B1 SINE B4 1 210 -82 3 1596 224 333 25 13 chr4 132614781 132614860 -23015260 + MIRm SINE MIR 104 183 -93 3 1596 299 324 129 25 chr4 132615082 132615280 -23014840 + MIRc SINE MIR 8 227 -41 3 1596 476 317 51 68 chr4 132615714 132615951 -23014169 - L2c LINE L2 -6 3381 3149 3 1596 664 213 14 20 chr4 132616522 132616670 -23013450 + MIRb SINE MIR 101 252 -16 3 1596 825 59 246 0 chr4 132622392 132622510 -23007610 + B1_Mus1 SINE Alu 2 148 0 3 1596 294 95 0 0 chr4 132622513 132622555 -23007565 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 3 1596 499 160 96 39 chr4 132622885 132622989 -23007131 - PB1D9 SINE Alu 0 120 11 3 1596 226 344 109 67 chr4 132622892 132623057 -23007063 - B4 SINE B4 -87 205 34 3 1596 815 148 56 7 chr4 132623261 132623404 -23006716 + B1_Mur4 SINE Alu 1 150 0 3 1596 1217 34 7 13 chr4 132623453 132623602 -23006518 + B1_Mus1 SINE Alu 1 148 0 3 1596 234 350 67 40 chr4 132623976 132624125 -23005995 + MIR3 SINE MIR 34 186 -22 3 1596 282 56 0 0 chr4 132624149 132624185 -23005935 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1596 346 297 9 43 chr4 132625791 132625907 -23004213 - PB1D10 SINE Alu -3 114 3 3 1596 226 315 32 51 chr4 132626770 132626975 -23003145 + MIRb SINE MIR 18 258 -10 3 1596 300 257 0 54 chr4 132627174 132627248 -23002872 + ID4_ SINE ID 1 70 -13 3 1596 414 0 0 0 chr4 132628111 132628157 -23001963 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1596 315 0 0 0 chr4 132628157 132628191 -23001929 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1596 491 193 35 44 chr4 132628486 132628600 -23001520 + PB1D9 SINE Alu 3 115 -5 3 1596 210 217 56 42 chr4 132629162 132629234 -23000886 - MIR3 SINE MIR -27 181 109 3 1596 1105 108 0 0 chr4 132631789 132631937 -22998183 - B1_Mus1 SINE Alu 0 148 1 3 1596 463 290 8 0 chr4 132631966 132632090 -22998030 - ID_B1 SINE B4 -98 126 2 3 1596 298 228 177 0 chr4 132632090 132632159 -22997961 - PB1D7 SINE Alu -37 83 1 3 1596 245 234 0 0 chr4 132632117 132632164 -22997956 - B4A SINE B4 -165 127 81 3 1596 436 216 79 26 chr4 132632178 132632292 -22997828 + PB1D9 SINE Alu 1 120 0 3 1596 419 122 140 0 chr4 132632454 132632556 -22997564 - B1_Mur3 SINE Alu 0 149 33 3 1596 470 262 10 0 chr4 132632573 132632676 -22997444 + ID_B1 SINE B4 101 204 -20 3 1596 243 88 0 0 chr4 132633406 132633440 -22996680 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1596 420 82 0 0 chr4 132633516 132633577 -22996543 + (A)n Simple_repeat Simple_repeat 1 61 0 3 1596 831 249 56 0 chr4 132633770 132633967 -22996153 - B3 SINE B2 0 216 9 3 1596 365 240 178 10 chr4 132634179 132634280 -22995840 - PB1D9 SINE Alu -1 119 2 3 1596 267 266 24 60 chr4 132635329 132635413 -22994707 + ID4_ SINE ID 1 81 -2 3 1596 230 288 95 14 chr4 132635883 132635957 -22994163 + ID2 SINE ID 1 80 -3 3 1596 377 279 87 14 chr4 132636224 132636362 -22993758 + B1F SINE Alu 1 148 -1 3 1596 474 191 89 18 chr4 132636363 132636475 -22993645 + PB1D9 SINE Alu 1 120 0 3 1596 361 335 68 86 chr4 132636485 132636635 -22993485 + RSINE1 SINE B4 1 148 -17 3 1596 541 195 250 47 chr4 132636635 132636807 -22993313 + B3 SINE B2 1 207 -9 3 1596 361 335 68 86 chr4 132636807 132636819 -22993301 + RSINE1 SINE B4 149 160 -5 3 1596 837 281 25 0 chr4 132636809 132637008 -22993112 + B4 SINE B4 64 267 -25 3 1596 207 243 176 0 chr4 132637208 132637282 -22992838 - MIRb SINE MIR -157 111 25 3 1596 294 197 61 0 chr4 132637462 132637528 -22992592 + ID4_ SINE ID 11 80 -3 3 1596 319 161 0 51 chr4 132637645 132637704 -22992416 + tRNA-Ala-GCY_ tRNA tRNA 3 58 -17 3 1596 908 124 19 70 chr4 132637729 132637787 -22992333 + B1_Mus1 SINE Alu 1 50 -98 3 1596 333 0 0 0 chr4 132637796 132637833 -22992287 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1596 939 74 80 22 chr4 132637833 132637961 -22992159 - B1_Mus1 SINE Alu -8 140 2 3 1596 908 124 19 70 chr4 132637961 132638058 -22992062 + B1_Mus1 SINE Alu 51 148 0 3 1596 521 294 83 19 chr4 132638077 132638282 -22991838 + ID_B1 SINE B4 6 223 -1 3 1596 589 188 51 0 chr4 132638305 132638422 -22991698 + RSINE1 SINE B4 3 125 -40 3 1596 239 246 54 68 chr4 132638573 132638647 -22991473 + ID4_ SINE ID 1 73 -10 3 1596 372 229 12 12 chr4 132638799 132638883 -22991237 + PB1D10 SINE Alu 21 104 -13 3 1596 1370 99 16 10 chr4 132638888 132639082 -22991038 - B2_Mm2 SINE B2 0 195 1 3 1596 303 113 0 0 chr4 132639094 132639109 -22991011 + (T)n Simple_repeat Simple_repeat 1 15 0 3 1596 813 119 17 8 chr4 132639109 132639228 -22990892 - PB1D9 SINE Alu 0 120 1 3 1596 303 113 0 0 chr4 132639228 132639248 -22990872 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1596 1263 41 0 0 chr4 132639248 132639394 -22990726 - B1_Mus2 SINE Alu 0 147 2 3 1596 303 113 0 0 chr4 132639394 132639410 -22990710 + (T)n Simple_repeat Simple_repeat 1 16 0 3 1596 415 156 67 86 chr4 132639858 132639963 -22990157 + B1_Mur1 SINE Alu 46 148 -1 3 1596 585 0 0 0 chr4 132640106 132640171 -22989949 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1596 210 174 0 0 chr4 132640456 132640502 -22989618 + (TCTCTG)n Simple_repeat Simple_repeat 5 50 0 3 1596 568 285 45 34 chr4 132642376 132642554 -22987566 + B3 SINE B2 3 182 -34 3 1596 568 261 0 8 chr4 132642747 132642878 -22987242 + ID_B1 SINE B4 92 221 -3 3 1596 215 157 55 73 chr4 132642830 132642885 -22987235 + PB1D9 SINE Alu 67 120 0 3 1596 405 0 0 0 chr4 132642927 132642972 -22987148 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1596 1189 61 0 13 chr4 132644229 132644379 -22985741 + B1_Mus1 SINE Alu 1 148 0 3 1596 1070 50 0 0 chr4 132644601 132644741 -22985379 + B1_Mus1 SINE Alu 9 148 0 3 199 368 252 116 9 chr4 132644761 132644873 -22985247 + RSINE1 SINE B4 3 126 -39 3 1597 541 147 0 47 chr4 132644931 132645038 -22985082 - PB1D9 SINE Alu -1 119 18 3 1597 267 180 0 152 chr4 132644948 132645053 -22985067 - MT2B2 LTR ERVL -327 257 169 3 1597 270 0 0 0 chr4 132645058 132645088 -22985032 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1597 222 297 31 0 chr4 132645091 132645155 -22984965 + ID4 SINE ID 4 69 -14 3 1597 414 310 31 6 chr4 132645256 132645415 -22984705 + RSINE1 SINE B4 2 164 -1 3 1597 451 31 0 30 chr4 132645606 132645673 -22984447 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1597 262 260 13 13 chr4 132646103 132646181 -22983939 + CT-rich Low_complexity Low_complexity 4 81 0 3 1597 285 250 115 49 chr4 132646358 132646480 -22983640 + MIRm SINE MIR 47 176 -100 3 1597 355 298 0 12 chr4 132647915 132647932 -22982188 + B4 SINE B4 69 150 -140 3 1597 450 136 0 0 chr4 132647932 132647998 -22982122 + B1_Mur4 SINE Alu 1 66 -84 3 1597 279 211 0 31 chr4 132648048 132648146 -22981974 + GA-rich Low_complexity Low_complexity 3 97 0 3 1597 183 80 0 0 chr4 132648219 132648244 -22981876 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1597 216 97 0 0 chr4 132648539 132648570 -22981550 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 1597 332 307 82 14 chr4 132648666 132648818 -22981302 + MIR3 SINE MIR 10 167 -41 3 1597 445 227 10 10 chr4 132648995 132649093 -22981027 + B1F SINE Alu 1 98 -51 3 1597 727 216 211 0 chr4 132649103 132649274 -22980846 + B3 SINE B2 4 210 -6 3 1597 900 146 11 6 chr4 132649985 132650164 -22979956 + GA-rich Low_complexity Low_complexity 1 180 0 4 1597 513 197 108 25 chr4 132650370 132650490 -22979630 + ID_B1 SINE B4 90 219 -5 4 1597 368 222 15 107 chr4 132650552 132650567 -22979553 - MT2B LTR ERVL -328 273 214 4 1597 605 127 0 19 chr4 132650567 132650671 -22979449 - B1_Mur3 SINE Alu -46 103 2 4 1597 368 222 15 107 chr4 132650671 132650683 -22979437 - MT2B LTR ERVL -328 213 155 4 1597 228 311 40 0 chr4 132650854 132650928 -22979192 - MIRc SINE MIR -111 157 81 4 1597 284 282 13 13 chr4 132650899 132650978 -22979142 - MIRb SINE MIR -185 83 5 4 1597 249 373 40 0 chr4 132651709 132651835 -22978285 + L2 LINE L2 2729 2859 -560 4 1597 1493 82 9 0 chr4 132651871 132652090 -22978030 + RLTR4_Mm LTR ERV1 1 221 -521 4 1597 302 23 23 0 chr4 132652088 132652131 -22977989 + RLTR4_Mm LTR ERV1 180 223 -519 4 1597 1693 62 0 0 chr4 132652133 132652358 -22977762 + RLTR4_Mm LTR ERV1 518 742 0 4 1597 19697 32 19 8 chr4 132652358 132654940 -22975180 + RLTR4_MM-int LTR ERV1 1 2612 -4989 4 1597 12627 92 2 2 chr4 132654928 132656764 -22973356 + RLTR4_MM-int LTR ERV1 3735 5570 -2036 4 1597 2347 17 0 0 chr4 132656764 132657051 -22973069 + RLTR4_MM-int LTR ERV1 7315 7601 0 4 1597 1493 82 9 0 chr4 132657051 132657270 -22972850 + RLTR4_Mm LTR ERV1 1 221 -521 4 1597 302 23 23 0 chr4 132657268 132657311 -22972809 + RLTR4_Mm LTR ERV1 180 223 -519 4 1597 1693 62 0 0 chr4 132657313 132657538 -22972582 + RLTR4_Mm LTR ERV1 518 742 0 4 1597 198 0 0 0 chr4 132657565 132657587 -22972533 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1597 191 36 0 35 chr4 132657587 132657616 -22972504 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 4 1597 345 294 85 96 chr4 132657635 132657823 -22972297 - ID_B1 SINE B4 -27 197 12 4 1597 404 276 9 28 chr4 132657995 132658103 -22972017 + PB1D10 SINE Alu 12 117 0 4 1597 1068 8 0 0 chr4 132658337 132658458 -22971662 + (TTC)n Simple_repeat Simple_repeat 3 123 0 4 1597 263 250 25 50 chr4 132658468 132658548 -22971572 - B4A SINE B4 -38 254 177 4 1597 243 236 12 12 chr4 132658577 132658645 -22971475 - B4A SINE B4 -219 73 6 4 1597 830 227 11 31 chr4 132658663 132658854 -22971266 - B3A SINE B2 -11 187 1 4 1597 560 241 7 28 chr4 132658859 132659000 -22971120 - B1_Mur1 SINE Alu -1 148 11 4 1597 363 213 0 62 chr4 132658973 132659053 -22971067 - PB1D9 SINE Alu -45 75 1 4 1597 299 290 62 45 chr4 132659064 132659088 -22971032 - B2_Mm2 SINE B2 -3 192 167 4 1597 258 32 0 0 chr4 132659088 132659119 -22971001 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1597 468 281 80 21 chr4 132659119 132659271 -22970849 - B3 SINE B2 -46 170 13 4 1597 854 220 32 0 chr4 132659269 132659455 -22970665 - ID_B1 SINE B4 -25 199 8 4 1597 217 299 255 21 chr4 132660278 132660466 -22969654 + L2c LINE L2 2934 3165 -222 4 1597 396 0 0 0 chr4 132660568 132660612 -22969508 + (CTG)n Simple_repeat Simple_repeat 1 44 0 4 1597 1272 14 0 0 chr4 132660612 132660758 -22969362 + (TTC)n Simple_repeat Simple_repeat 3 148 0 4 1597 1166 47 0 0 chr4 132660758 132660906 -22969214 - B2_Mm2 SINE B2 -46 149 2 4 1597 698 210 227 0 chr4 132660933 132661109 -22969011 - B3 SINE B2 0 216 1 4 1597 588 234 136 51 chr4 132661150 132661189 -22968931 + B3 SINE B2 1 33 -183 4 1597 1402 75 32 0 chr4 132661189 132661375 -22968745 + B2_Mm2 SINE B2 1 192 -3 4 1597 588 234 136 51 chr4 132661375 132661511 -22968609 + B3 SINE B2 34 191 -25 4 1597 400 292 23 24 chr4 132661514 132661667 -22968453 - MIRb SINE MIR -94 182 31 4 1597 1193 68 0 7 chr4 132661961 132662108 -22968012 - B1_Mus2 SINE Alu -1 146 1 4 1597 443 312 35 26 chr4 132662116 132662292 -22967828 + MIRb SINE MIR 15 204 -58 4 1597 207 0 0 0 chr4 132662363 132662386 -22967734 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1597 867 153 0 83 chr4 132662388 132662504 -22967616 - B1_Mur4 SINE Alu -6 144 40 4 1597 1300 79 56 6 chr4 132662504 132662683 -22967437 - B2_Mm1a SINE B2 -4 189 2 4 1597 867 153 0 83 chr4 132662683 132662723 -22967397 - B1_Mur4 SINE Alu -111 39 1 4 1597 383 302 10 4 chr4 132662726 132662843 -22967277 - B1_Mur2 SINE Alu -5 115 1 4 1597 764 257 52 6 chr4 132662876 132663048 -22967072 - B3A SINE B2 -16 182 3 4 1597 414 0 0 0 chr4 132663054 132663100 -22967020 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1597 512 265 0 13 chr4 132663100 132663249 -22966871 - RMER10B LTR ERVL -58 340 194 4 1597 1035 154 49 19 chr4 132663290 132663495 -22966625 - B3 SINE B2 -4 212 2 4 1597 186 71 0 0 chr4 132663498 132663526 -22966594 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4 1597 392 343 172 18 chr4 132663554 132663842 -22966278 + MER115 DNA Tip100 9 340 -353 4 1597 534 310 62 4 chr4 132664070 132664265 -22965855 - MIR SINE MIR -49 219 23 4 1597 201 323 104 0 chr4 132665098 132665194 -22964926 - MIRm SINE MIR -148 128 23 4 1597 235 215 111 25 chr4 132665306 132665387 -22964733 - MIR3 SINE MIR -20 188 101 4 1597 833 156 35 14 chr4 132665771 132665914 -22964206 + B1_Mus2 SINE Alu 2 147 0 4 1597 261 0 0 0 chr4 132666089 132666118 -22964002 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4 1597 833 257 18 18 chr4 132666195 132666417 -22963703 + ID_B1 SINE B4 3 224 0 4 1597 578 259 67 50 chr4 132666596 132666775 -22963345 + B3A SINE B2 17 198 0 4 1597 1264 34 7 0 chr4 132666780 132666927 -22963193 + B1_Mus1 SINE Alu 1 148 0 4 1597 1499 77 0 5 chr4 132666969 132667164 -22962956 + B2_Mm2 SINE B2 2 195 0 4 1597 916 141 7 0 chr4 132667177 132667319 -22962801 + B1_Mus2 SINE Alu 5 147 0 4 1597 521 154 0 0 chr4 132667348 132667426 -22962694 + BC1_Mm scRNA scRNA 1 78 -74 4 1597 330 244 67 0 chr4 132667426 132667438 -22962682 + ID_B1 SINE B4 1 96 -128 4 1597 1544 48 0 11 chr4 132667470 132667659 -22962461 - B2_Mm1a SINE B2 -5 188 2 4 1597 322 282 0 33 chr4 132667715 132667836 -22962284 + BC1_Mm scRNA scRNA 7 123 -29 4 1597 1143 77 0 0 chr4 132667913 132668056 -22962064 + B1_Mus1 SINE Alu 1 143 -5 4 1597 354 336 0 0 chr4 132668292 132668402 -22961718 + PB1D10 SINE Alu 1 110 -7 4 1597 428 264 20 28 chr4 132668551 132668669 -22961451 + PB1D10 SINE Alu 1 125 -2 4 1597 641 109 114 35 chr4 132668794 132668908 -22961212 + B1_Mus2 SINE Alu 22 144 -3 4 1597 478 137 20 50 chr4 132668932 132669021 -22961099 + B1F2 SINE Alu 52 138 -11 4 1597 302 42 0 41 chr4 132669021 132669070 -22961050 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1597 803 193 0 0 chr4 132669704 132669839 -22960281 + B1_Mur4 SINE Alu 16 150 0 4 1597 647 294 35 10 chr4 132669848 132670047 -22960073 + ID_B1 SINE B4 3 206 -18 4 1597 260 272 0 36 chr4 132670047 132670131 -22959989 + RSINE1 SINE B4 78 158 -7 4 1597 414 0 0 0 chr4 132670161 132670207 -22959913 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1597 992 95 88 0 chr4 132670211 132670358 -22959762 - B2_Mm2 SINE B2 -35 160 1 4 1597 563 97 0 0 chr4 132670409 132670481 -22959639 - tRNA-Gly-GGY tRNA tRNA -2 72 1 4 1597 866 28 19 0 chr4 132670497 132670605 -22959515 - B2_Mm1a SINE B2 -4 189 80 4 1597 250 331 101 40 chr4 132670692 132670840 -22959280 - MIR SINE MIR -71 191 35 4 1597 616 213 70 16 chr4 132671080 132671209 -22958911 - B1_Mur2 SINE Alu -13 136 1 4 1597 1300 71 0 6 chr4 132671268 132671439 -22958681 + B2_Mm2 SINE B2 1 170 -25 4 1597 194 0 39 0 chr4 132671667 132671693 -22958427 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1597 282 263 111 68 chr4 132672184 132672338 -22957782 + MIRb SINE MIR 24 176 -92 4 1597 208 281 122 21 chr4 132672623 132672763 -22957357 - MIR SINE MIR -58 210 54 4 1597 204 67 0 0 chr4 132672935 132672965 -22957155 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1597 300 277 25 48 chr4 132673093 132673218 -22956902 + MIRc SINE MIR 7 126 -150 4 1597 321 26 0 0 chr4 132673841 132673879 -22956241 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1597 201 74 0 0 chr4 132674006 132674033 -22956087 + (CCCG)n Simple_repeat Simple_repeat 2 28 0 4 1597 367 113 0 27 chr4 132674347 132674420 -22955700 + (TCC)n Simple_repeat Simple_repeat 3 73 0 4 1597 302 0 0 26 chr4 132674442 132674481 -22955639 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 1597 1035 22 0 88 chr4 132674481 132674629 -22955491 - B1_Mus1 SINE Alu -12 136 2 4 1597 474 250 79 24 chr4 132674885 132675005 -22955115 + B1F1 SINE Alu 11 138 -11 4 1597 306 0 0 0 chr4 132675005 132675039 -22955081 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1597 327 176 118 0 chr4 132675070 132675138 -22954982 + RSINE1 SINE B4 15 90 -75 4 1597 210 272 111 26 chr4 132675237 132675354 -22954766 + L2c LINE L2 2950 3076 -311 4 1597 330 26 0 0 chr4 132675420 132675459 -22954661 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1597 216 0 0 0 chr4 132675459 132675482 -22954638 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1597 307 258 89 40 chr4 132675569 132675670 -22954450 - B1F SINE Alu 0 149 44 4 1597 189 0 0 0 chr4 132675744 132675765 -22954355 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1597 439 283 35 17 chr4 132675766 132675881 -22954239 - RSINE1 SINE B4 -38 127 11 4 1597 485 220 10 20 chr4 132675881 132675983 -22954137 - ID_B1 SINE B4 -1 223 123 4 1597 213 154 0 0 chr4 132675985 132676024 -22954096 + C-rich Low_complexity Low_complexity 1 39 0 4 1597 329 349 51 28 chr4 132676579 132676756 -22953364 - MIRb SINE MIR -70 198 18 4 1597 898 113 10 0 chr4 132677243 132677449 -22952671 + (GA)n Simple_repeat Simple_repeat 1 208 0 4 1597 256 336 16 48 chr4 132677623 132677748 -22952372 - MIRb SINE MIR -23 245 125 4 1597 409 188 58 19 chr4 132677808 132677911 -22952209 - PB1D10 SINE Alu 0 117 11 4 1597 370 278 76 25 chr4 132678100 132678218 -22951902 - MIRc SINE MIR -107 161 38 4 1597 216 36 0 0 chr4 132678282 132678310 -22951810 - PB1D9 SINE Alu -4 116 89 4 1597 415 325 68 44 chr4 132678447 132678653 -22951467 + MIRb SINE MIR 42 252 -16 4 1597 649 194 33 53 chr4 132678829 132678981 -22951139 - B1_Mur3 SINE Alu 0 149 1 4 1597 260 27 0 26 chr4 132678983 132679021 -22951099 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1597 1235 22 0 0 chr4 132679021 132679160 -22950960 - B1_Mus1 SINE Alu -9 139 1 5 1597 366 245 74 91 chr4 132679164 132679285 -22950835 - PB1D7 SINE Alu -1 119 1 5 1597 839 147 0 0 chr4 132679485 132679614 -22950506 - B1_Mus1 SINE Alu -14 134 6 5 1597 464 169 31 92 chr4 132679498 132679628 -22950492 - MT2B LTR ERVL -323 278 157 5 1597 2065 195 79 129 chr4 132679690 132679808 -22950312 - RMER19C LTR ERVK 0 611 503 5 1597 1534 48 21 0 chr4 132679808 132679996 -22950124 + B2_Mm1a SINE B2 2 193 0 5 1597 2065 195 79 129 chr4 132679996 132680520 -22949600 - RMER19C LTR ERVK -109 502 1 5 1597 358 221 57 0 chr4 132680530 132680626 -22949494 - PB1D7 SINE Alu -6 114 13 5 1597 1216 60 41 164 chr4 132680674 132680850 -22949270 - B2_Mm1t SINE B2 0 193 32 5 1597 1272 20 0 7 chr4 132680850 132680997 -22949123 - B1_Mm SINE Alu 0 147 2 5 1597 1216 60 41 164 chr4 132680997 132681039 -22949081 - B2_Mm1t SINE B2 -162 31 2 5 1597 1492 74 0 10 chr4 132681043 132681235 -22948885 - B2_Mm2 SINE B2 -4 191 2 5 1597 660 137 20 0 chr4 132681242 132681344 -22948776 - B1_Mur1 SINE Alu -5 144 41 5 1597 266 298 46 138 chr4 132681270 132681488 -22948632 - MT2B LTR ERVL -336 265 68 5 1597 342 316 8 79 chr4 132681376 132681503 -22948617 - PB1D7 SINE Alu 0 120 3 5 1597 460 294 50 8 chr4 132681496 132681595 -22948525 + B1F1 SINE Alu 1 104 -45 5 1597 359 300 0 76 chr4 132681595 132681714 -22948406 + B3A SINE B2 3 112 -86 5 1597 188 205 51 0 chr4 132681719 132681758 -22948362 - MIR SINE MIR -62 146 106 5 1597 229 318 0 111 chr4 132681758 132681778 -22948342 + ID SINE ID 70 78 -146 5 1597 417 257 99 18 chr4 132681778 132681889 -22948231 + PB1D7 SINE Alu 1 120 0 5 1597 271 137 0 19 chr4 132682105 132682157 -22947963 - B2_Mm2 SINE B2 -98 97 47 5 1597 1076 88 35 141 chr4 132682208 132682348 -22947772 - B2_Mm1t SINE B2 -14 179 35 5 1597 1202 55 7 0 chr4 132682348 132682494 -22947626 + B1_Mm SINE Alu 1 147 0 5 1597 1076 88 35 141 chr4 132682494 132682552 -22947568 - B2_Mm1t SINE B2 -159 34 2 5 1597 417 209 47 0 chr4 132682570 132682656 -22947464 + 4.5SRNA scRNA scRNA 1 90 -4 5 1597 1257 84 90 0 chr4 132682656 132682834 -22947286 + B2_Mm2 SINE B2 2 195 0 5 1597 244 333 9 56 chr4 132682940 132683048 -22947072 - MIR SINE MIR -141 121 19 5 1597 252 122 0 0 chr4 132683543 132683584 -22946536 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1597 500 253 0 0 chr4 132683628 132683719 -22946401 - RSINE1 SINE B4 -64 101 11 5 1597 817 230 54 5 chr4 132683846 132684051 -22946069 - B3 SINE B2 -1 215 1 5 1597 249 259 0 0 chr4 132684445 132684499 -22945621 + PB1D9 SINE Alu 2 55 -65 5 1597 241 129 0 114 chr4 132684504 132684574 -22945546 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 5 1597 528 179 18 70 chr4 132684574 132684688 -22945432 + B1_Mur2 SINE Alu 42 149 0 5 1597 207 100 0 0 chr4 132684836 132684866 -22945254 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1597 1219 61 0 0 chr4 132684866 132685013 -22945107 - B1_Mus1 SINE Alu 0 148 2 5 1597 951 214 58 92 chr4 132685266 132685559 -22944561 - B4 SINE B4 0 292 10 5 1597 386 189 27 0 chr4 132686844 132686918 -22943202 + MIR SINE MIR 65 140 -68 5 1597 234 282 99 37 chr4 132686966 132687047 -22943073 + MIR3 SINE MIR 91 176 -32 5 1597 183 242 86 57 chr4 132687375 132687445 -22942675 - MIRm SINE MIR -130 146 75 5 1597 415 265 0 79 chr4 132688564 132688582 -22941538 - PB1D10 SINE Alu 0 117 106 5 1597 495 0 0 0 chr4 132688582 132688637 -22941483 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 5 1597 415 265 0 79 chr4 132688637 132688745 -22941375 - PB1D10 SINE Alu -12 105 1 5 1597 239 284 12 98 chr4 132688676 132688758 -22941362 - B4A SINE B4 -140 152 78 5 1597 389 281 83 0 chr4 132688773 132688869 -22941251 - B3A SINE B2 -94 104 1 5 1597 26 0 0 0 chr4 132688876 132688902 -22941218 + AT_rich Low_complexity Low_complexity 1 26 0 5 1597 365 314 29 10 chr4 132688944 132689047 -22941073 + B3 SINE B2 98 202 -14 5 1597 1252 54 132 0 chr4 132689419 132689585 -22940535 - B2_Mm1t SINE B2 -4 189 2 5 1597 1149 133 5 22 chr4 132689585 132689769 -22940351 - B2_Mm1t SINE B2 -12 181 1 5 1597 341 211 0 50 chr4 132689879 132689959 -22940161 - ID_B1 SINE B4 0 224 149 5 1597 516 211 229 24 chr4 132689994 132690164 -22939956 - B3 SINE B2 -11 205 1 5 1597 254 228 35 0 chr4 132690164 132690221 -22939899 - ID_B1 SINE B4 -67 157 99 5 1597 1219 55 0 7 chr4 132690357 132690505 -22939615 - B1_Mm SINE Alu 0 147 1 5 1597 1437 53 26 16 chr4 132690505 132690696 -22939424 - B2_Mm2 SINE B2 0 195 3 5 1597 957 263 90 47 chr4 132690710 132691133 -22938987 - RLTR12B LTR ERVK -77 451 11 5 1597 507 223 19 10 chr4 132691139 132691243 -22938877 - ID_B1 SINE B4 -117 107 3 5 1597 609 81 11 0 chr4 132691669 132691756 -22938364 + B1_Mus2 SINE Alu 59 146 -1 5 1597 1257 88 18 0 chr4 132691945 132692115 -22938005 + B2_Mm2 SINE B2 5 177 -18 5 1597 632 166 284 31 chr4 132692132 132692294 -22937826 + B3 SINE B2 14 216 0 5 1597 225 0 0 0 chr4 132692308 132692333 -22937787 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1597 348 43 0 0 chr4 132692333 132692378 -22937742 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1597 516 222 79 8 chr4 132692387 132692514 -22937606 - RSINE1 SINE B4 -14 151 16 5 1597 894 159 14 0 chr4 132692620 132692758 -22937362 + B1_Mus1 SINE Alu 3 142 -6 5 1597 266 215 0 25 chr4 132692761 132692822 -22937298 - PB1D7 SINE Alu -90 57 2 5 1597 664 212 161 12 chr4 132692978 132693140 -22936980 + B3A SINE B2 2 187 -11 5 1597 30 0 0 0 chr4 132693153 132693183 -22936937 + AT_rich Low_complexity Low_complexity 1 30 0 5 1597 419 176 0 45 chr4 132693425 132693514 -22936606 + Lx9 LINE L1 7367 7451 -193 5 1597 422 184 9 37 chr4 132693543 132693650 -22936470 + Lx9 LINE L1 7536 7639 -5 5 1597 207 244 0 0 chr4 132693708 132693753 -22936367 + CT-rich Low_complexity Low_complexity 2 46 0 5 1597 440 268 27 0 chr4 132693754 132693866 -22936254 - PB1D9 SINE Alu -5 115 1 5 1597 492 128 0 0 chr4 132693903 132693981 -22936139 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1597 294 284 0 0 chr4 132693981 132694048 -22936072 - ID4 SINE ID -13 70 4 5 1597 727 173 45 8 chr4 132694059 132694193 -22935927 - B1_Mur2 SINE Alu 0 149 11 5 1597 1297 102 27 0 chr4 132694211 132694398 -22935722 - B2_Mm2 SINE B2 -2 193 2 5 1597 507 73 0 0 chr4 132694477 132694545 -22935575 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1597 185 65 32 0 chr4 132694565 132694596 -22935524 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5 1597 230 159 0 0 chr4 132694602 132694646 -22935474 + T-rich Low_complexity Low_complexity 1 44 0 5 1597 1239 34 0 20 chr4 132694647 132694796 -22935324 - B1_Mm SINE Alu 0 147 2 5 1597 294 155 52 0 chr4 132694801 132694859 -22935261 - B1F SINE Alu 0 149 89 5 1597 376 269 34 116 chr4 132694923 132695070 -22935050 - MER20 DNA MER1_type -84 135 1 5 1597 893 219 81 102 chr4 132695614 132695958 -22934162 - MTE2a LTR MaLR -14 405 6 5 1597 315 203 62 0 chr4 132695955 132696019 -22934101 + RSINE1 SINE B4 67 134 -31 5 1597 973 143 0 7 chr4 132696052 132696200 -22933920 + B1_Mus1 SINE Alu 2 148 0 5 1597 750 261 60 12 chr4 132696226 132696393 -22933727 - B3 SINE B2 -40 176 2 5 1597 27 29 0 0 chr4 132696398 132696432 -22933688 + AT_rich Low_complexity Low_complexity 1 34 0 5 1597 597 190 162 8 chr4 132696436 132696553 -22933567 - B1_Mur3 SINE Alu -8 141 7 5 1597 309 277 0 129 chr4 132696453 132696569 -22933551 - MT2B LTR ERVL -343 258 158 5 1597 1464 49 38 0 chr4 132696577 132696760 -22933360 - B2_Mm2 SINE B2 -4 191 2 5 1597 542 217 0 50 chr4 132696801 132696922 -22933198 + PB1D9 SINE Alu 3 117 -3 5 1597 301 343 44 7 chr4 132696957 132697092 -22933028 - RSINE1 SINE B4 -2 163 24 5 1597 674 282 32 11 chr4 132697268 132697458 -22932662 + B3A SINE B2 1 194 -4 5 1597 311 204 30 111 chr4 132697480 132697579 -22932541 - Charlie12 DNA MER1_type -2744 129 39 5 1597 265 292 0 15 chr4 132698296 132698362 -22931758 + polypyrimidine Low_complexity Low_complexity 2 66 0 5 1597 249 312 25 0 chr4 132698362 132698442 -22931678 - ID4 SINE ID 0 83 2 5 1597 321 216 56 112 chr4 132698461 132698586 -22931534 - PB1 SINE Alu -9 118 1 5 1597 1148 56 7 0 chr4 132698710 132698853 -22931267 + B1_Mus1 SINE Alu 5 148 0 5 1597 435 149 0 0 chr4 132698854 132698928 -22931192 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 5 1597 612 190 19 1 chr4 132699163 132699277 -22930843 - B3 SINE B2 -80 115 1 5 1597 415 279 27 0 chr4 132699350 132699461 -22930659 - ID_B1 SINE B4 -2 222 109 5 1597 293 256 99 57 chr4 132699482 132699623 -22930497 - B1F1 SINE Alu -2 147 1 5 1597 183 42 0 0 chr4 132699667 132699691 -22930429 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1597 234 188 125 0 chr4 132699700 132699748 -22930372 - B1_Mur4 SINE Alu -51 99 46 5 1597 523 252 15 37 chr4 132699782 132699918 -22930202 - ID_B1 SINE B4 0 224 92 5 1597 266 324 33 72 chr4 132699918 132699934 -22930186 - B1_Mus1 SINE Alu -1 146 1 5 1597 447 244 70 0 chr4 132699981 132700096 -22930024 + B1_Mur1 SINE Alu 26 148 -1 5 1597 432 239 11 11 chr4 132700133 132700222 -22929898 + B1F SINE Alu 1 89 -60 5 1597 263 288 95 29 chr4 132700263 132700405 -22929715 + MIRb SINE MIR 102 258 -10 5 1597 231 94 0 0 chr4 132700977 132701009 -22929111 - URR1B DNA MER1_type 0 225 194 6 1597 1151 75 7 0 chr4 132701025 132701171 -22928949 + B1_Mus2 SINE Alu 1 147 0 6 1597 27 0 0 0 chr4 132701171 132701198 -22928922 + AT_rich Low_complexity Low_complexity 1 27 0 6 1597 740 255 98 31 chr4 132701202 132701511 -22928609 - RLTR11B LTR ERVK -28 413 65 6 1597 766 147 166 6 chr4 132701503 132701660 -22928460 - URR1B DNA MER1_type -43 182 1 6 1597 424 269 0 77 chr4 132702174 132702291 -22927829 + PB1D10 SINE Alu 3 110 -7 6 1597 664 258 136 29 chr4 132702434 132702817 -22927303 - CR1_Mam LINE CR1 -188 2016 1593 6 1597 275 212 140 10 chr4 132702877 132702977 -22927143 - B2_Mm2 SINE B2 -4 191 79 6 1597 1444 74 16 0 chr4 132703137 132703327 -22926793 - B2_Mm1a SINE B2 0 193 1 6 1597 225 65 0 0 chr4 132703403 132703434 -22926686 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1597 1098 37 0 0 chr4 132703434 132703569 -22926551 - B1_Mm SINE Alu -6 141 7 6 1597 180 0 0 0 chr4 132703574 132703594 -22926526 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1597 1117 69 7 0 chr4 132703599 132703744 -22926376 - B2_Mm2 SINE B2 -26 169 24 6 1597 287 256 114 46 chr4 132703749 132703765 -22926355 - B3 SINE B2 -5 211 193 6 1597 925 147 50 28 chr4 132703765 132703947 -22926173 - B2_Mm2 SINE B2 -8 187 2 6 1597 345 228 146 20 chr4 132703947 132704061 -22926059 - B3A SINE B2 -5 193 72 6 1597 292 186 0 48 chr4 132704056 132704118 -22926002 - B3A SINE B2 -68 130 72 6 1597 583 210 41 25 chr4 132704113 132704235 -22925885 - B3A SINE B2 -68 130 7 6 1597 377 270 100 0 chr4 132704245 132704345 -22925775 - PB1D10 SINE Alu -7 110 1 6 1597 487 278 10 0 chr4 132704345 132704438 -22925682 - B1_Mm SINE Alu -53 94 1 6 1597 424 338 22 14 chr4 132704438 132704477 -22925643 - ID_B1 SINE B4 -44 178 42 6 1597 747 114 83 8 chr4 132704484 132704617 -22925503 - B1_Mus1 SINE Alu -1 147 5 6 1597 628 238 24 63 chr4 132704639 132704845 -22925275 - B3A SINE B2 0 198 1 6 1597 319 370 0 0 chr4 132704856 132704937 -22925183 - B1F2 SINE Alu -68 81 1 6 1597 343 229 289 0 chr4 132704992 132705075 -22925045 - ID_B1 SINE B4 -13 211 105 6 1597 914 149 223 0 chr4 132705452 132705627 -22924493 - B3 SINE B2 -1 215 2 6 1597 1066 115 0 7 chr4 132705669 132705818 -22924302 - B1_Mus1 SINE Alu 0 148 1 6 1597 270 244 49 37 chr4 132705943 132706024 -22924096 + B4 SINE B4 3 84 -208 6 1597 370 271 44 53 chr4 132706101 132706214 -22923906 - RSINE1 SINE B4 -26 139 28 6 1597 251 241 93 29 chr4 132706218 132706335 -22923785 - L1MC3 LINE L1 -912 6873 6717 6 1597 1726 21 0 0 chr4 132706367 132706559 -22923561 - B2_Mm1a SINE B2 -1 192 1 6 1597 198 335 38 17 chr4 132706571 132706684 -22923436 - MIRm SINE MIR -129 147 26 6 1597 257 308 170 68 chr4 132706863 132707128 -22922992 - MamRep434 DNA TcMar -87 339 48 6 1597 205 417 0 24 chr4 132707306 132707429 -22922691 + MIRc SINE MIR 21 140 -128 6 1597 201 147 0 0 chr4 132707445 132707479 -22922641 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1597 1228 54 0 0 chr4 132707479 132707627 -22922493 - B1_Mus1 SINE Alu 0 148 1 6 1597 826 200 111 0 chr4 132707647 132707770 -22922350 - B3 SINE B2 -8 208 81 6 1597 486 0 0 0 chr4 132707770 132707824 -22922296 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1597 826 200 111 0 chr4 132707824 132707880 -22922240 - B3 SINE B2 -136 80 11 6 1597 656 165 17 25 chr4 132707954 132708072 -22922048 + PB1D9 SINE Alu 2 118 -2 6 1597 576 153 17 51 chr4 132708089 132708206 -22921914 + B1_Mur3 SINE Alu 37 149 0 6 1597 661 232 186 0 chr4 132708223 132708400 -22921720 - B3 SINE B2 -4 212 3 6 1597 1154 36 43 0 chr4 132708410 132708550 -22921570 - B1_Mus2 SINE Alu -1 146 1 6 1597 23 33 0 0 chr4 132708685 132708715 -22921405 + AT_rich Low_complexity Low_complexity 1 30 0 6 1597 384 146 318 0 chr4 132709340 132709450 -22920670 - B3 SINE B2 -7 209 65 6 1597 496 171 143 0 chr4 132709484 132709589 -22920531 - PB1D9 SINE Alu 0 120 1 6 1597 398 227 41 0 chr4 132709591 132709688 -22920432 - ID_B1 SINE B4 0 224 124 6 1597 348 195 0 0 chr4 132710107 132710179 -22919941 + CT-rich Low_complexity Low_complexity 7 78 0 6 1597 813 166 28 0 chr4 132710179 132710324 -22919796 - B1_Mur4 SINE Alu -1 149 1 6 1597 1620 45 21 0 chr4 132710324 132710656 -22919464 + (TTTC)n Simple_repeat Simple_repeat 1 338 0 6 1597 299 296 241 9 chr4 132710656 132710772 -22919348 - RSINE1 SINE B4 -20 145 3 6 1597 349 266 34 115 chr4 132710772 132710980 -22919140 + L1ME3B LINE L1 5647 5837 -403 6 1597 612 263 109 16 chr4 132711020 132711213 -22918907 + ID_B1 SINE B4 9 219 -5 6 1597 285 98 0 0 chr4 132711448 132711489 -22918631 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1597 1252 34 0 7 chr4 132711489 132711636 -22918484 - B1_Mus2 SINE Alu 0 147 2 6 1597 1887 215 59 20 chr4 132711777 132712167 -22917953 - RMER19B LTR ERVK -418 484 80 6 1597 781 66 223 0 chr4 132712185 132712306 -22917814 + B1_Mus1 SINE Alu 1 148 0 6 1597 262 300 191 13 chr4 132712423 132712653 -22917467 + L2 LINE L2 2744 3014 -405 6 1597 545 227 91 0 chr4 132712765 132712897 -22917223 + B1_Mur2 SINE Alu 5 148 -1 6 1597 632 252 30 0 chr4 132713387 132713518 -22916602 - B1_Mus2 SINE Alu -4 143 9 6 1597 504 182 0 11 chr4 132713645 132713734 -22916386 - B1_Mur2 SINE Alu -1 148 61 6 1597 1257 41 0 0 chr4 132713736 132713883 -22916237 + B1_Mus1 SINE Alu 2 148 0 6 1597 198 0 0 0 chr4 132713883 132713905 -22916215 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1597 551 269 190 11 chr4 132713967 132714151 -22915969 + ID_B1 SINE B4 4 220 -4 6 1597 1339 79 45 0 chr4 132714169 132714347 -22915773 + B2_Mm2 SINE B2 2 187 -8 6 1597 734 200 7 46 chr4 132714372 132714524 -22915596 + B1_Mus2 SINE Alu 2 147 0 6 1597 443 291 37 7 chr4 132714848 132714983 -22915137 + B1F SINE Alu 3 141 -8 6 1597 628 231 8 0 chr4 132715362 132715483 -22914637 - B1_Mur2 SINE Alu -15 134 13 6 1597 246 295 9 104 chr4 132715391 132715497 -22914623 - MT2B LTR ERVL -344 257 162 6 1597 357 241 109 159 chr4 132716325 132716365 -22913755 - RSINE1 SINE B4 -32 133 105 6 1597 739 213 124 11 chr4 132716365 132716550 -22913570 + B3 SINE B2 2 207 -9 6 1597 357 241 109 159 chr4 132716550 132716647 -22913473 - RSINE1 SINE B4 -61 104 3 6 1597 251 258 89 0 chr4 132716654 132716722 -22913398 - PB1D7 SINE Alu -8 112 34 6 1597 180 0 0 0 chr4 132717603 132717623 -22912497 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 6 1597 1471 58 0 0 chr4 132717629 132717802 -22912318 - B2_Mm1t SINE B2 -19 174 2 6 1597 200 178 0 0 chr4 132717926 132717952 -22912168 + A-rich Low_complexity Low_complexity 1 26 0 6 1597 1188 42 7 0 chr4 132717952 132718095 -22912025 + B1_Mus2 SINE Alu 4 147 0 6 1597 200 178 0 0 chr4 132718095 132718113 -22912007 + A-rich Low_complexity Low_complexity 27 44 0 6 1597 519 17 0 0 chr4 132718418 132718478 -22911642 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1597 401 157 188 24 chr4 132718735 132718820 -22911300 - B1_Mus2 SINE Alu -6 141 43 6 1597 243 264 82 14 chr4 132718846 132718919 -22911201 - B1F SINE Alu -60 89 12 6 1597 425 239 26 60 chr4 132719006 132719122 -22910998 + PB1D9 SINE Alu 7 118 -2 6 1597 411 69 0 42 chr4 132719244 132719340 -22910780 + B2_Mm2 SINE B2 1 154 -41 6 1597 350 89 0 0 chr4 132719341 132719386 -22910734 - HAL1-3A_ME LINE L1 -838 2020 1976 6 1597 762 207 0 0 chr4 132719387 132719551 -22910569 + (TA)n Simple_repeat Simple_repeat 1 164 0 6 1597 344 256 26 0 chr4 132719581 132719659 -22910461 + B1F2 SINE Alu 1 80 -69 6 1597 617 142 9 36 chr4 132719745 132719855 -22910265 + B1_Mur4 SINE Alu 43 149 -1 6 1597 392 275 9 9 chr4 132719890 132720000 -22910120 - B3A SINE B2 -17 181 72 6 1597 281 268 32 97 chr4 132720314 132720438 -22909682 - PB1D10 SINE Alu -1 116 1 6 1597 389 322 61 0 chr4 132720490 132720605 -22909515 - RSINE1 SINE B4 -19 146 25 6 1597 1104 63 35 0 chr4 132720606 132720749 -22909371 + B1_Mus1 SINE Alu 1 148 0 6 1597 612 247 126 23 chr4 132720781 132720955 -22909165 - B3A SINE B2 -4 194 3 6 1597 629 243 29 0 chr4 132721042 132721182 -22908938 - B1_Mur1 SINE Alu -5 144 1 6 1597 201 256 0 0 chr4 132721190 132721233 -22908887 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1597 518 264 34 69 chr4 132721300 132721475 -22908645 - B4A SINE B4 -66 226 58 6 1597 236 333 108 0 chr4 132721494 132721596 -22908524 - MIRb SINE MIR -55 213 101 6 1597 1463 48 27 5 chr4 132721679 132721867 -22908253 - B2_Mm1t SINE B2 0 193 2 6 1597 332 237 160 62 chr4 132722760 132722904 -22907216 + ID_B1 SINE B4 2 159 -65 6 1597 261 267 0 16 chr4 132723200 132723248 -22906872 + ID_B1 SINE B4 87 134 -90 6 1597 876 60 105 0 chr4 132723248 132723381 -22906739 + B1_Mus2 SINE Alu 1 147 0 6 1597 261 267 0 16 chr4 132723381 132723393 -22906727 + ID_B1 SINE B4 135 146 -78 6 1597 298 164 51 64 chr4 132723428 132723506 -22906614 + PB1D9 SINE Alu 41 117 -3 6 1597 280 314 84 7 chr4 132723607 132723761 -22906359 - Lx8 LINE L1 -371 7102 6937 6 1597 23 33 0 0 chr4 132723829 132723859 -22906261 + AT_rich Low_complexity Low_complexity 1 30 0 6 1597 816 145 21 28 chr4 132723871 132724013 -22906107 + B1_Mur1 SINE Alu 2 142 -7 6 1597 1464 23 11 0 chr4 132724021 132724196 -22905924 + B2_Mm1a SINE B2 2 178 -15 7 1597 251 0 59 0 chr4 132724196 132724230 -22905890 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 7 1597 1142 61 0 0 chr4 132724235 132724382 -22905738 + B1_Mus2 SINE Alu 1 147 0 7 1597 210 37 0 0 chr4 132724395 132724422 -22905698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1597 894 18 0 0 chr4 132724437 132724548 -22905572 + B1_Mm SINE Alu 31 141 -6 7 1597 243 0 0 0 chr4 132724551 132724578 -22905542 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1597 579 26 0 0 chr4 132724787 132724865 -22905255 + L1Md_T LINE L1 6505 6582 0 7 1597 185 0 40 0 chr4 132724998 132725023 -22905097 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 7 1597 534 200 39 4 chr4 132725696 132725838 -22904282 - B3A SINE B2 -45 150 2 7 1597 213 282 28 14 chr4 132727110 132727182 -22902938 - B1F1 SINE Alu -46 103 31 7 1597 222 303 76 0 chr4 132727185 132727251 -22902869 - MIR3 SINE MIR -28 180 110 7 1597 283 225 0 123 chr4 132727324 132727405 -22902715 - ID4 SINE ID -9 74 4 7 1597 568 185 29 44 chr4 132727491 132727627 -22902493 - 7SK RNA RNA -195 136 3 7 1597 304 238 40 167 chr4 132727735 132727760 -22902360 - B2_Mm2 SINE B2 0 195 177 7 1597 1225 134 10 34 chr4 132727760 132727968 -22902152 - B3 SINE B2 -13 203 1 7 1597 470 301 138 51 chr4 132727968 132728164 -22901956 - B3A SINE B2 -2 214 2 7 1597 217 349 161 0 chr4 132728214 132728363 -22901757 - L3 LINE CR1 -70 4419 4247 7 1597 673 235 43 29 chr4 132728485 132728695 -22901425 + B4A SINE B4 2 214 -78 7 1597 603 253 32 13 chr4 132728704 132728860 -22901260 + MER105 DNA DNA 40 198 -6 7 1597 346 281 24 84 chr4 132728863 132729030 -22901090 - Charlie16a DNA MER1_type -43 299 143 7 1597 451 217 66 0 chr4 132729508 132729614 -22900506 - B3 SINE B2 0 216 104 7 1597 688 199 7 20 chr4 132729657 132729806 -22900314 - B1_Mur3 SINE Alu 0 149 3 7 1597 212 0 36 0 chr4 132729897 132729925 -22900195 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1597 1179 27 0 7 chr4 132729929 132730076 -22900044 - B1_Mus2 SINE Alu 0 147 2 7 1597 240 200 0 0 chr4 132730706 132730756 -22899364 + CT-rich Low_complexity Low_complexity 2 51 0 7 1597 1316 98 5 25 chr4 132730857 132731055 -22899065 - B2_Mm2 SINE B2 0 195 2 7 1597 687 109 0 0 chr4 132731167 132731268 -22898852 + B1_Mus2 SINE Alu 34 134 -13 7 1597 392 300 26 97 chr4 132731734 132731955 -22898165 - ID_B1 SINE B4 -13 211 7 7 1597 195 69 0 0 chr4 132733829 132733858 -22896262 + (CTG)n Simple_repeat Simple_repeat 3 31 0 7 1597 390 231 13 0 chr4 132734541 132734619 -22895501 - PB1D10 SINE Alu -6 111 33 7 1597 326 235 276 0 chr4 132735030 132735128 -22894992 - PB1 SINE Alu -2 125 1 7 1597 429 305 47 0 chr4 132735293 132735421 -22894699 + RSINE1 SINE B4 3 136 -29 7 1597 265 210 48 0 chr4 132735420 132735482 -22894638 - B1_Mus2 SINE Alu -82 65 1 7 1597 328 200 21 72 chr4 132735683 132735780 -22894340 - Lx8 LINE L1 -2 7471 7380 7 1597 475 198 0 0 chr4 132735789 132735875 -22894245 - B1_Mur3 SINE Alu -61 88 3 7 1597 233 245 28 130 chr4 132735875 132735901 -22894219 - MT2B LTR ERVL -444 157 143 7 1597 307 21 42 21 chr4 132736052 132736100 -22894020 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1597 1160 41 0 26 chr4 132736100 132736243 -22893877 - B1_Mus1 SINE Alu -7 141 2 7 1597 214 147 0 0 chr4 132736454 132736488 -22893632 + (TTTCC)n Simple_repeat Simple_repeat 3 36 0 7 1597 1087 200 19 0 chr4 132736515 132736720 -22893400 - B3 SINE B2 -5 211 3 7 1597 602 278 87 5 chr4 132736740 132736935 -22893185 - ID_B1 SINE B4 -12 212 2 7 1597 232 313 0 0 chr4 132737256 132737339 -22892781 - PB1 SINE Alu -2 125 43 7 1597 205 232 143 24 chr4 132737436 132737520 -22892600 - MIR SINE MIR -41 221 128 7 1597 1758 122 69 43 chr4 132737556 132737906 -22892214 - RLTR15 LTR ERVK 0 359 1 7 1597 1391 74 16 0 chr4 132737952 132738142 -22891978 + B2_Mm2 SINE B2 3 195 0 7 1597 320 247 78 0 chr4 132738162 132738239 -22891881 + PB1D9 SINE Alu 12 94 -26 7 1597 811 106 106 0 chr4 132738285 132738417 -22891703 - B1_Mus1 SINE Alu -1 147 2 7 1597 565 277 80 17 chr4 132738418 132738594 -22891526 + B3A SINE B2 30 216 0 7 1597 334 263 72 14 chr4 132738636 132738775 -22891345 + B1F2 SINE Alu 2 148 -1 7 1597 284 94 176 2 chr4 132738915 132738978 -22891142 + B1_Mur3 SINE Alu 75 146 -1 7 1597 262 175 0 113 chr4 132738977 132739048 -22891072 + MT2B LTR ERVL 169 231 -370 7 1597 389 133 0 0 chr4 132738988 132739048 -22891072 + B1_Mus1 SINE Alu 16 75 -73 7 1597 380 167 0 0 chr4 132739258 132739324 -22890796 + B1_Mur1 SINE Alu 82 147 -2 7 1597 539 167 20 0 chr4 132739488 132739590 -22890530 - PB1D10 SINE Alu -5 112 9 7 1597 270 255 100 36 chr4 132739505 132739615 -22890505 - B4 SINE B4 -105 187 71 7 1597 399 21 0 0 chr4 132741678 132741726 -22888394 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1597 396 0 0 0 chr4 132742422 132742466 -22887654 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1597 618 262 58 21 chr4 132742863 132743054 -22887066 + B3A SINE B2 1 198 0 7 1597 213 39 0 0 chr4 132743186 132743212 -22886908 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 1597 456 19 0 0 chr4 132743215 132743268 -22886852 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1597 278 226 16 0 chr4 132743274 132743336 -22886784 - B1_Mur2 SINE Alu -13 136 74 7 1597 1174 77 61 0 chr4 132743367 132743548 -22886572 - B2_Mm1t SINE B2 -1 192 1 7 1597 335 295 27 0 chr4 132743556 132743668 -22886452 - PB1D10 SINE Alu -2 115 1 7 1597 274 209 0 185 chr4 132743842 132743855 -22886265 - B1_Mus2 SINE Alu 0 147 137 7 1597 1059 75 0 7 chr4 132743855 132744003 -22886117 - B1_Mus2 SINE Alu 0 147 1 7 1597 274 209 0 185 chr4 132744003 132744124 -22885996 - B1_Mus2 SINE Alu -11 136 38 7 1597 1076 127 28 6 chr4 132744272 132744454 -22885666 + B2_Mm1t SINE B2 1 186 -7 7 1597 911 47 134 0 chr4 132744456 132744583 -22885537 + B1_Mm SINE Alu 1 144 -3 7 1597 188 34 0 33 chr4 132744584 132744614 -22885506 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1597 894 122 7 13 chr4 132747577 132747726 -22882394 - B1_Mus1 SINE Alu 0 148 1 7 1597 1154 48 0 0 chr4 132748235 132748382 -22881738 + B1_Mus2 SINE Alu 1 147 0 7 1597 271 195 177 25 chr4 132748591 132748670 -22881450 + PB1D10 SINE Alu 1 91 -26 7 1597 619 207 7 91 chr4 132749126 132749280 -22880840 - B1_Mur2 SINE Alu 0 149 9 7 1597 733 152 8 0 chr4 132749460 132749578 -22880542 + PB1D9 SINE Alu 1 119 -1 7 1597 493 269 0 0 chr4 132749578 132749685 -22880435 + PB1D10 SINE Alu 1 108 -9 7 1597 207 69 0 0 chr4 132750647 132750676 -22879444 + (CCCCCT)n Simple_repeat Simple_repeat 5 33 0 7 1597 338 331 16 8 chr4 132751161 132751283 -22878837 + CT-rich Low_complexity Low_complexity 2 124 0 7 1597 333 224 119 30 chr4 132752605 132752706 -22877414 - MIR SINE MIR -78 130 21 7 1597 21 0 0 0 chr4 132754245 132754266 -22875854 + AT_rich Low_complexity Low_complexity 1 21 0 7 1597 312 247 93 0 chr4 132755380 132755477 -22874643 - B1F1 SINE Alu 0 149 44 7 1597 345 24 0 0 chr4 132755677 132755719 -22874401 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1597 528 16 0 0 chr4 132757583 132757644 -22872476 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1597 360 0 0 0 chr4 132757644 132757683 -22872437 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1597 204 306 81 12 chr4 132757918 132758004 -22872116 - MIRm SINE MIR -110 166 75 7 1597 518 229 36 9 chr4 132758496 132758606 -22871514 - PB1D7 SINE Alu -1 119 7 7 1597 687 25 0 0 chr4 132758618 132758699 -22871421 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 1597 806 146 0 8 chr4 132758700 132758831 -22871289 - B1_Mus2 SINE Alu -1 146 17 7 1597 373 95 0 60 chr4 132758820 132758887 -22871233 - PB1D9 SINE Alu -55 65 3 7 1597 490 250 49 37 chr4 132758831 132758862 -22871258 - ID_B1 SINE B4 -1 223 60 7 1597 856 228 31 10 chr4 132759079 132759274 -22870846 + ID_B1 SINE B4 24 222 -2 7 1597 416 19 0 19 chr4 132759913 132759967 -22870153 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1597 435 149 0 0 chr4 132760168 132760242 -22869878 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1597 306 0 0 0 chr4 132760830 132760864 -22869256 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1597 1031 68 7 14 chr4 132761351 132761499 -22868621 + B1_Mm SINE Alu 1 147 0 7 1597 1063 128 39 0 chr4 132761517 132761696 -22868424 + B2_Mm1t SINE B2 4 189 -4 7 1597 184 211 75 19 chr4 132762056 132762109 -22868011 + MIRb SINE MIR 19 74 -194 7 1597 347 326 44 36 chr4 132762144 132762281 -22867839 - ID_B1 SINE B4 0 224 87 7 1597 227 246 97 16 chr4 132762389 132762451 -22867669 - ID4_ SINE ID -16 67 1 7 1597 1454 47 0 40 chr4 132762558 132762758 -22867362 - B2_Mm2 SINE B2 -2 193 2 7 1597 728 265 0 6 chr4 132762809 132762991 -22867129 - B3A SINE B2 -16 182 2 7 1597 266 284 0 111 chr4 132763094 132763193 -22866927 - PB1D10 SINE Alu -29 88 1 7 1597 1329 79 16 16 chr4 132763249 132763441 -22866679 - B2_Mm2 SINE B2 -2 193 2 8 1597 972 75 0 0 chr4 132763456 132763590 -22866530 - B1_Mus2 SINE Alu -2 145 12 8 1597 436 292 50 0 chr4 132763588 132763708 -22866412 - ID_B1 SINE B4 -15 209 84 8 1597 221 286 125 39 chr4 132763956 132764086 -22866034 + MIR SINE MIR 16 165 -111 8 1597 240 274 96 7 chr4 132764183 132764283 -22865837 - B1F1 SINE Alu -3 146 9 8 1597 627 188 230 23 chr4 132764294 132764468 -22865652 - B3 SINE B2 -4 212 3 8 1597 343 324 9 9 chr4 132764484 132764596 -22865524 - ID_B1 SINE B4 -17 207 96 8 1597 216 326 47 0 chr4 132764807 132764893 -22865227 + MIRb SINE MIR 12 101 -167 8 1597 248 0 31 0 chr4 132765822 132765854 -22864266 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 8 1597 21 0 0 0 chr4 132768352 132768373 -22861747 + GC_rich Low_complexity Low_complexity 1 21 0 8 1597 24 0 0 0 chr4 132768452 132768476 -22861644 + GC_rich Low_complexity Low_complexity 1 24 0 8 1597 730 136 83 0 chr4 132770471 132770603 -22859517 + B1_Mur4 SINE Alu 6 148 -2 8 1597 406 251 5 0 chr4 132770614 132770714 -22859406 + B3A SINE B2 1 102 -114 8 1597 1129 55 7 7 chr4 132770724 132770871 -22859249 + B1_Mm SINE Alu 1 147 0 8 1597 370 179 240 10 chr4 132770894 132770990 -22859130 + PB1D9 SINE Alu 2 119 -1 8 1597 3694 59 35 4 chr4 132771288 132771800 -22858320 - MT2B2 LTR ERVL -56 528 1 8 1597 262 258 104 31 chr4 132771853 132771949 -22858171 + PB1D10 SINE Alu 14 116 -1 8 1597 769 57 27 49 chr4 132772041 132772225 -22857895 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1597 692 164 62 8 chr4 132772229 132772358 -22857762 - B1_Mus2 SINE Alu -3 144 9 8 1597 325 267 58 19 chr4 132772269 132772372 -22857748 - B4 SINE B4 -105 187 81 8 1597 1044 67 40 7 chr4 132772391 132772541 -22857579 + B2_Mm2 SINE B2 2 156 -39 8 1597 503 256 78 58 chr4 132772565 132772756 -22857364 - B3A SINE B2 0 198 4 8 1597 618 157 0 0 chr4 132773209 132773330 -22856790 + GA-rich Low_complexity Low_complexity 1 121 0 8 1597 274 275 198 12 chr4 132773334 132773415 -22856705 - PB1D7 SINE Alu -24 96 1 8 1597 401 203 31 47 chr4 132773728 132773900 -22856220 - ID_B1 SINE B4 -3 221 10 8 1597 263 143 0 0 chr4 132774027 132774069 -22856051 - B1_Mur4 SINE Alu -108 42 1 8 1597 768 233 0 163 chr4 132774396 132774526 -22855594 + B3 SINE B2 1 94 -122 8 1597 485 221 114 0 chr4 132774526 132774657 -22855463 - B1_Mur3 SINE Alu -3 146 1 8 1597 768 233 0 163 chr4 132774657 132774777 -22855343 + B3 SINE B2 95 210 -6 8 1597 336 239 15 0 chr4 132774904 132774971 -22855149 - ID4 SINE ID -14 69 2 8 1597 411 256 11 11 chr4 132774987 132775078 -22855042 - PB1D10 SINE Alu -12 105 15 8 1597 884 226 28 24 chr4 132775098 132775311 -22854809 - B3 SINE B2 -2 214 1 8 1597 676 221 14 7 chr4 132775335 132775481 -22854639 - B1_Mur2 SINE Alu -2 147 1 8 1597 593 268 81 0 chr4 132775505 132775703 -22854417 - ID_B1 SINE B4 -8 216 3 8 1598 1314 69 5 21 chr4 132776096 132776289 -22853831 + B2_Mm2 SINE B2 6 195 0 8 1598 558 97 252 9 chr4 132776319 132776434 -22853686 - URR1B DNA MER1_type -4 221 79 8 1598 252 174 0 80 chr4 132776506 132776581 -22853539 + B1_Mur2 SINE Alu 78 146 -3 8 1598 324 0 0 0 chr4 132779277 132779313 -22850807 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1598 669 205 0 23 chr4 132780583 132780713 -22849407 + RSINE1 SINE B4 7 133 -32 8 1598 37 19 0 18 chr4 132780739 132780770 -22849350 + AT_rich Low_complexity Low_complexity 1 31 0 8 1598 1152 88 0 13 chr4 132780770 132780920 -22849200 + B1_Mus1 SINE Alu 1 148 0 8 1598 37 19 0 18 chr4 132780920 132780943 -22849177 + AT_rich Low_complexity Low_complexity 1 23 0 8 1598 1305 35 6 0 chr4 132781029 132781041 -22849079 - B2_Mm1a SINE B2 -20 173 161 8 1598 252 77 0 0 chr4 132781041 132781080 -22849040 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 8 1598 1305 35 6 0 chr4 132781080 132781239 -22848881 - B2_Mm1a SINE B2 -33 160 2 8 1598 270 233 0 0 chr4 132781239 132781297 -22848823 + ID_B1 SINE B4 167 224 0 8 1598 226 235 29 0 chr4 132781526 132781594 -22848526 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1598 333 312 39 44 chr4 132781618 132781799 -22848321 - B4A SINE B4 0 292 113 8 1598 283 269 53 21 chr4 132781839 132781934 -22848186 + B4A SINE B4 2 99 -193 8 1598 323 206 0 0 chr4 132782178 132782241 -22847879 + MIR SINE MIR 84 146 -62 8 1598 644 273 60 5 chr4 132782658 132782842 -22847278 + B3A SINE B2 1 194 -4 8 1598 1255 40 0 0 chr4 132782842 132782990 -22847130 + B1_Mus1 SINE Alu 1 148 0 8 1598 234 0 0 0 chr4 132782990 132783016 -22847104 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1598 495 218 119 30 chr4 132783027 132783208 -22846912 + B3 SINE B2 1 187 -8 8 1598 652 194 35 21 chr4 132783234 132783376 -22846744 - B1_Mur1 SINE Alu 0 149 6 8 1598 1378 56 83 6 chr4 132783414 132783575 -22846545 + B2_Mm2 SINE B2 2 161 -34 8 1598 225 0 0 0 chr4 132783575 132783600 -22846520 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 1598 1378 56 83 6 chr4 132783600 132783618 -22846502 + B2_Mm2 SINE B2 162 193 -2 8 1598 264 213 66 0 chr4 132784070 132784131 -22845989 + PB1D10 SINE Alu 49 113 -4 8 1598 186 43 0 0 chr4 132784202 132784225 -22845895 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 8 1598 1368 60 66 0 chr4 132784227 132784409 -22845711 + B2_Mm2 SINE B2 1 194 -1 8 1598 201 147 0 0 chr4 132784409 132784443 -22845677 + (AGGGGG)n Simple_repeat Simple_repeat 5 38 0 8 1598 785 90 7 22 chr4 132784435 132784571 -22845549 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 8 1598 860 154 234 0 chr4 132784571 132784746 -22845374 + B3 SINE B2 1 216 0 8 1598 423 296 37 0 chr4 132784780 132784888 -22845232 + PB1D7 SINE Alu 2 113 -7 8 1598 641 182 27 102 chr4 132784911 132785058 -22845062 + B1_Mur3 SINE Alu 12 147 -2 8 1598 1653 175 18 94 chr4 132785067 132785459 -22844661 + ORR1D1 LTR MaLR 5 366 -8 8 1598 639 225 14 40 chr4 132786223 132786371 -22843749 - B1_Mur1 SINE Alu 0 149 6 8 1598 230 307 40 13 chr4 132786432 132786508 -22843612 - ID4_ SINE ID -4 79 2 8 1598 764 102 25 0 chr4 132786509 132786627 -22843493 + B2_Mm2 SINE B2 4 124 -71 8 1598 558 0 0 0 chr4 132786656 132786718 -22843402 + (CATA)n Simple_repeat Simple_repeat 2 63 0 8 1598 661 290 16 159 chr4 132786805 132786910 -22843210 + B4A SINE B4 1 153 -139 8 1598 746 167 8 15 chr4 132786910 132787044 -22843076 + B1_Mur1 SINE Alu 10 142 -7 8 1598 661 290 16 159 chr4 132787044 132787125 -22842995 + B4A SINE B4 154 274 -18 8 1598 288 0 0 0 chr4 132787135 132787167 -22842953 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1598 1585 196 33 30 chr4 132787982 132788319 -22841801 + ORR1C2 LTR MaLR 1 338 -46 8 1598 773 111 16 0 chr4 132788320 132788446 -22841674 + B1_Mur4 SINE Alu 22 149 -1 8 1598 328 164 0 0 chr4 132788458 132788513 -22841607 + ORR1C2 LTR MaLR 324 378 0 8 1598 213 315 33 22 chr4 132788605 132788696 -22841424 - MIRb SINE MIR -96 172 81 8 1598 393 149 0 0 chr4 132788730 132788797 -22841323 + (TCC)n Simple_repeat Simple_repeat 3 69 0 8 1598 1482 75 16 0 chr4 132789008 132789196 -22840924 + B2_Mm2 SINE B2 1 191 -4 8 1598 193 355 25 61 chr4 132789835 132790033 -22840087 - L2 LINE L2 -435 2984 2794 8 1598 1239 64 0 23 chr4 132790035 132790210 -22839910 + B2_Mm2 SINE B2 1 171 -24 8 1598 307 276 46 28 chr4 132790220 132790328 -22839792 + PB1D10 SINE Alu 1 110 -7 8 1598 349 330 0 0 chr4 132790384 132790487 -22839633 + B3A SINE B2 70 172 -26 8 1598 209 204 0 22 chr4 132790500 132790545 -22839575 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1598 436 179 168 9 chr4 132790781 132790888 -22839232 - B1_Mur3 SINE Alu -17 132 9 8 1598 1242 100 0 0 chr4 132791023 132791203 -22838917 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 1598 558 155 0 0 chr4 132791203 132791300 -22838820 + CT-rich Low_complexity Low_complexity 3 99 0 8 1598 236 139 0 0 chr4 132791324 132791367 -22838753 - B2_Mm2 SINE B2 -94 101 59 8 1598 1266 86 22 33 chr4 132791446 132791627 -22838493 - B2_Mm1t SINE B2 -14 179 1 8 1598 3231 175 124 83 chr4 132792300 132793155 -22836965 - RMER19B LTR ERVK -12 890 1 8 1598 248 233 17 0 chr4 132793227 132793287 -22836833 + MIR SINE MIR 83 143 -65 8 1598 269 207 50 33 chr4 132793477 132793597 -22836523 + (CAGTG)n Simple_repeat Simple_repeat 5 126 0 8 1598 553 14 0 0 chr4 132794203 132794272 -22835848 + L1_Mus2 LINE L1 6498 6566 0 8 1598 1158 36 0 7 chr4 132794282 132794420 -22835700 + B1_Mm SINE Alu 2 138 -9 8 1598 216 0 0 0 chr4 132794420 132794444 -22835676 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1598 1341 107 11 0 chr4 132794703 132794890 -22835230 - B2_Mm1t SINE B2 -3 190 2 8 1598 190 214 24 0 chr4 132795254 132795296 -22834824 + L3 LINE CR1 4256 4298 -191 8 1598 943 133 35 0 chr4 132795480 132795623 -22834497 - B1_Mur4 SINE Alu -2 148 1 8 1598 1023 228 19 0 chr4 132795833 132796044 -22834076 - B3 SINE B2 0 216 2 8 1598 22 0 0 0 chr4 132796967 132796989 -22833131 + GC_rich Low_complexity Low_complexity 1 22 0 8 1598 767 205 82 33 chr4 132798265 132798447 -22831673 + B3A SINE B2 3 193 -5 8 1598 257 51 26 0 chr4 132798447 132798486 -22831634 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1598 684 0 0 0 chr4 132799496 132799572 -22830548 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1598 421 271 16 25 chr4 132799791 132799912 -22830208 + ID_B1 SINE B4 105 224 0 9 1598 205 305 195 0 chr4 132799925 132800007 -22830113 + MIRb SINE MIR 46 143 -125 9 1598 560 172 205 0 chr4 132800020 132800142 -22829978 - B1_Mur1 SINE Alu -2 147 1 9 1598 735 251 9 97 chr4 132800169 132800385 -22829735 - B3A SINE B2 0 198 2 9 1598 769 201 0 0 chr4 132800566 132800705 -22829415 + B1_Mur4 SINE Alu 6 144 -6 9 1598 295 300 34 110 chr4 132800576 132800722 -22829398 + B4A SINE B4 104 238 -54 9 1598 690 124 18 0 chr4 132800728 132800841 -22829279 + B1_Mur4 SINE Alu 6 120 -30 9 1598 252 0 0 0 chr4 132803685 132803713 -22826407 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1598 354 115 14 8 chr4 132804898 132804998 -22825122 - B2_Mm2 SINE B2 -10 185 47 9 1598 1307 85 11 6 chr4 132805045 132805222 -22824898 - B2_Mm1t SINE B2 -14 179 2 9 1598 23 0 0 0 chr4 132807378 132807401 -22822719 + GC_rich Low_complexity Low_complexity 1 23 0 9 1598 203 316 75 12 chr4 132808130 132808210 -22821910 - MIR3 SINE MIR -15 193 109 9 1598 654 114 179 0 chr4 132810340 132810463 -22819657 - URR1A DNA MER1_type 0 226 82 9 1598 1168 147 213 35 chr4 132810490 132810816 -22819304 + MTC LTR MaLR 33 416 -5 9 1598 759 157 37 0 chr4 132810849 132810983 -22819137 - B1_Mur1 SINE Alu -1 148 10 9 1598 1188 62 0 14 chr4 132810983 132811131 -22818989 + B1_Mus1 SINE Alu 3 148 0 9 1598 398 195 380 25 chr4 132811171 132811334 -22818786 - ID_B1 SINE B4 -3 221 1 9 1598 233 226 19 0 chr4 132812660 132812713 -22817407 - MIRc SINE MIR -110 158 105 9 1598 701 228 71 6 chr4 132814033 132814201 -22815919 - ID_B1 SINE B4 -36 188 10 9 1598 597 139 10 71 chr4 132814208 132814370 -22815750 - B1_Mur3 SINE Alu -1 148 7 9 1598 1144 94 140 0 chr4 132814398 132814569 -22815551 - B2_Mm2 SINE B2 0 195 1 9 1598 1138 93 134 0 chr4 132815611 132815783 -22814337 - B2_Mm2 SINE B2 0 195 1 9 1598 810 311 31 14 chr4 132815936 132816223 -22813897 - B4A SINE B4 0 292 1 9 1598 210 203 67 17 chr4 132816230 132816290 -22813830 - MIRc SINE MIR -123 145 83 9 1598 237 33 0 0 chr4 132819025 132819055 -22811065 + (GGA)n Simple_repeat Simple_repeat 2 31 0 9 1598 253 309 87 51 chr4 132819331 132819473 -22810647 + MIRb SINE MIR 15 162 -114 9 1598 514 263 133 26 chr4 132819768 132819963 -22810157 - B3 SINE B2 0 216 1 9 1598 751 189 55 0 chr4 132819977 132820104 -22810016 - B1_Mus1 SINE Alu -13 135 2 9 1598 225 0 0 0 chr4 132820142 132820167 -22809953 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1598 988 67 97 0 chr4 132820167 132820301 -22809819 - B1_Mus2 SINE Alu 0 147 1 9 1598 311 293 50 0 chr4 132820338 132820437 -22809683 - RSINE1 SINE B4 -15 150 47 9 1598 654 259 63 29 chr4 132820497 132820704 -22809416 - B3 SINE B2 -2 214 1 9 1598 281 268 46 28 chr4 132820711 132820814 -22809306 - B3 SINE B2 -85 108 7 9 1598 765 163 15 15 chr4 132820874 132821011 -22809109 + B1_Mur3 SINE Alu 13 149 0 9 1598 574 207 311 0 chr4 132823279 132823443 -22806677 + B3 SINE B2 2 216 0 9 1598 180 0 0 0 chr4 132823452 132823472 -22806648 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 1598 253 169 268 0 chr4 132823533 132823604 -22806516 - B1_Mm SINE Alu -56 91 2 9 1598 186 43 0 0 chr4 132824267 132824290 -22805830 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 9 1598 391 305 69 0 chr4 132824920 132825051 -22805069 + MLT1A0 LTR MaLR 226 365 0 9 1598 314 141 45 30 chr4 132825345 132825411 -22804709 + B1_Mus2 SINE Alu 70 136 -11 9 1598 197 250 83 0 chr4 132825473 132825533 -22804587 + MIR SINE MIR 35 99 -163 9 1598 705 188 70 0 chr4 132826047 132826175 -22803945 - B1_Mm SINE Alu -10 137 1 9 1598 636 255 28 0 chr4 132826178 132826323 -22803797 - B1F SINE Alu 0 149 1 9 1598 628 247 9 85 chr4 132827219 132827302 -22802818 + ID_B1 SINE B4 29 222 0 9 1598 938 63 0 0 chr4 132827302 132827429 -22802691 + B1_Mus1 SINE Alu 22 148 0 9 1598 935 147 219 6 chr4 132827454 132827632 -22802488 + B3 SINE B2 1 216 0 9 1598 238 270 88 20 chr4 132827688 132827790 -22802330 + 7SLRNA srpRNA srpRNA 212 320 0 9 1598 1154 222 10 0 chr4 132827810 132828017 -22802103 + B3 SINE B2 1 209 -7 9 1598 513 0 0 0 chr4 132828042 132828099 -22802021 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1598 378 0 0 0 chr4 132828099 132828140 -22801980 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1598 461 212 189 42 chr4 132828304 132828447 -22801673 + RSINE1 SINE B4 2 165 0 9 1598 1153 95 12 0 chr4 132828697 132828865 -22801255 + B2_Mm1t SINE B2 2 171 -22 9 1598 358 127 0 0 chr4 132828894 132828949 -22801171 + B2_Mm2 SINE B2 47 101 -94 9 1598 24 32 0 0 chr4 132828973 132829004 -22801116 + AT_rich Low_complexity Low_complexity 1 31 0 9 1598 783 206 28 33 chr4 132829320 132829501 -22800619 - B3A SINE B2 -15 183 4 9 1598 189 292 117 68 chr4 132829662 132829765 -22800355 + L2a LINE L2 3285 3392 -34 9 1598 453 330 60 0 chr4 132829823 132830005 -22800115 + L1MA6 LINE L1 6031 6223 -77 9 1598 387 0 0 0 chr4 132830013 132830056 -22800064 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1598 354 225 67 11 chr4 132830189 132830279 -22799841 - B4 SINE B4 -173 119 25 9 1598 253 170 0 54 chr4 132830346 132830402 -22799718 + 4.5SRNA scRNA scRNA 36 88 -6 9 1598 667 124 0 9 chr4 132830353 132830459 -22799661 + B1_Mur2 SINE Alu 45 149 0 9 1598 405 252 106 0 chr4 132831411 132831534 -22798586 + RSINE1 SINE B4 2 137 -28 9 1598 240 260 32 155 chr4 132831850 132832005 -22798115 - B1_Mur1 SINE Alu -9 140 5 9 1598 612 273 108 23 chr4 132831997 132832211 -22797909 - B4A SINE B4 -59 233 2 9 1598 441 250 68 38 chr4 132832258 132832391 -22797729 + B1F1 SINE Alu 13 149 0 9 1598 707 228 7 14 chr4 132832486 132832633 -22797487 - B1_Mur1 SINE Alu -1 148 3 9 1598 643 144 163 31 chr4 132834318 132834447 -22795673 - B1_Mur2 SINE Alu -1 148 3 9 1598 213 39 0 0 chr4 132834760 132834786 -22795334 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1598 1060 56 13 66 chr4 132835098 132835250 -22794870 - B1_Mus2 SINE Alu -2 145 2 9 1598 537 25 75 0 chr4 132835288 132835368 -22794752 + L1Md_F3 LINE L1 6498 6583 -1 9 1598 1256 88 61 0 chr4 132835765 132835946 -22794174 - B2_Mm2 SINE B2 -3 192 1 9 1598 194 284 14 69 chr4 132836092 132836164 -22793956 + L2c LINE L2 2847 2914 -505 9 1598 23 0 0 0 chr4 132836271 132836294 -22793826 + AT_rich Low_complexity Low_complexity 1 23 0 9 1598 1336 65 32 11 chr4 132836338 132836499 -22793621 + B2_Mm1a SINE B2 2 163 -30 9 1598 219 36 0 0 chr4 132836499 132836527 -22793593 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 9 1598 1157 96 0 0 chr4 132836527 132836673 -22793447 + B1_Mus2 SINE Alu 2 147 0 9 1598 1336 65 32 11 chr4 132836673 132836698 -22793422 + B2_Mm1a SINE B2 164 192 -1 9 1598 279 317 192 24 chr4 132837274 132837571 -22792549 + L2c LINE L2 3038 3384 -3 9 1598 378 288 42 55 chr4 132838523 132838688 -22791432 + L2c LINE L2 3150 3312 -75 9 1598 271 167 15 15 chr4 132838981 132839048 -22791072 + CT-rich Low_complexity Low_complexity 2 68 0 9 1598 719 197 22 0 chr4 132839492 132839629 -22790491 + B1_Mur3 SINE Alu 1 140 -9 9 1598 279 0 0 0 chr4 132839629 132839660 -22790460 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1598 1303 57 6 6 chr4 132839715 132839893 -22790227 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 9 1598 581 90 0 11 chr4 132839895 132839985 -22790135 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 9 1598 639 170 0 9 chr4 132840027 132840140 -22789980 - MTB_Mm LTR MaLR -295 112 1 9 1598 586 83 35 16 chr4 132840548 132840664 -22789456 - B1_Mus2 SINE Alu -29 120 1 9 1598 459 240 0 50 chr4 132840664 132840705 -22789415 - ID SINE ID -143 81 46 9 1598 975 222 32 0 chr4 132841414 132841599 -22788521 - B3 SINE B2 -25 191 1 9 1598 269 329 53 35 chr4 132841763 132841933 -22788187 + MER5B DNA MER1_type 6 178 0 9 1598 841 190 64 44 chr4 132842277 132842481 -22787639 - B3 SINE B2 -8 208 1 9 1598 385 169 77 0 chr4 132842629 132842694 -22787426 - B1_Mur3 SINE Alu -79 70 1 9 1598 292 260 44 51 chr4 132842752 132842910 -22787210 - L1MC LINE L1 -544 5800 5644 9 1598 367 204 9 131 chr4 132842910 132843017 -22787103 + MT2B LTR ERVL 171 264 -337 9 1598 1011 57 0 0 chr4 132842928 132843052 -22787068 + B1_Mus1 SINE Alu 25 148 0 9 1598 494 259 138 0 chr4 132843156 132843272 -22786848 + B1F SINE Alu 6 137 -12 9 1598 291 269 101 0 chr4 132843280 132843427 -22786693 - L1MC LINE L1 -2230 5555 5384 9 1598 516 167 62 0 chr4 132843449 132843545 -22786575 - B1F2 SINE Alu -6 143 42 9 1598 590 179 0 43 chr4 132843555 132843672 -22786448 - B1_Mus1 SINE Alu 0 148 37 9 1598 249 274 39 69 chr4 132843582 132843684 -22786436 - MT2B LTR ERVL -323 278 180 9 1598 493 205 68 136 chr4 132843686 132843787 -22786333 - B3 SINE B2 -79 137 42 9 1598 517 29 0 0 chr4 132843787 132843855 -22786265 - L1Md_F3 LINE L1 -14 6570 6503 9 1598 493 205 68 136 chr4 132843855 132843900 -22786220 - B3 SINE B2 -175 41 1 9 1598 453 172 87 48 chr4 132843929 132844033 -22786087 - PB1D10 SINE Alu -9 108 1 9 1598 273 270 164 39 chr4 132844054 132844158 -22785962 + PB1D10 SINE Alu 1 117 0 9 1598 545 191 67 0 chr4 132844164 132844269 -22785851 + PB1D7 SINE Alu 1 112 -8 1 1598 441 295 48 10 chr4 132844282 132844501 -22785619 - L1MC LINE L1 -878 5268 5039 9 1598 438 252 176 0 chr4 132844527 132844658 -22785462 - B3A SINE B2 -43 155 2 1 1598 198 0 0 0 chr4 132844671 132844693 -22785427 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1598 771 62 142 0 chr4 132844711 132844824 -22785296 + B1_Mus1 SINE Alu 6 134 -14 1 1598 1510 43 43 0 chr4 132844824 132845010 -22785110 - B2_Mm2 SINE B2 -1 194 1 1 1598 348 207 24 12 chr4 132845460 132845543 -22784577 + MTEb LTR MaLR 294 377 -2 1 1598 314 287 74 11 chr4 132845718 132845813 -22784307 - B4A SINE B4 -84 208 108 1 1598 454 194 80 20 chr4 132845988 132846088 -22784032 + B1_Mm SINE Alu 3 108 -39 1 1598 1175 74 0 13 chr4 132846123 132846273 -22783847 - B1_Mus1 SINE Alu 0 148 1 1 1598 625 237 113 19 chr4 132846280 132846439 -22783681 - B3A SINE B2 -1 197 24 1 1598 701 43 0 52 chr4 132846764 132846861 -22783259 - B1_Mur4 SINE Alu -1 149 58 1 1598 448 379 78 48 chr4 132846968 132847072 -22783048 + MER119 DNA MER1_type 109 215 -368 1 1598 438 187 198 24 chr4 132847072 132847198 -22782922 + B1_Mur2 SINE Alu 1 148 -1 1 1598 448 379 78 48 chr4 132847198 132847323 -22782797 + MER119 DNA MER1_type 216 345 -238 1 1598 567 261 13 86 chr4 132847374 132847525 -22782595 + ID_B1 SINE B4 52 191 -33 1 1598 438 251 107 34 chr4 132847536 132847713 -22782407 + MER119 DNA MER1_type 394 583 0 1 1598 1409 76 38 0 chr4 132847729 132847913 -22782207 + B2_Mm2 SINE B2 1 191 -4 1 1598 288 71 0 51 chr4 132848963 132849022 -22781098 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 1 1598 979 118 27 14 chr4 132851504 132851650 -22778470 + B1_Mur3 SINE Alu 2 149 0 1 1598 371 341 49 50 chr4 132854914 132855500 -22774620 + L2c LINE L2 2790 3367 -20 1 1598 324 48 0 0 chr4 132857262 132857304 -22772816 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1598 937 220 30 10 chr4 132857345 132857547 -22772573 - B3 SINE B2 -10 206 1 1 1598 253 270 0 39 chr4 132858627 132858704 -22771416 - MIR3 SINE MIR -36 172 99 1 1598 576 345 0 40 chr4 132858806 132858981 -22771139 - ID_B1 SINE B4 -55 169 2 1 1598 253 278 43 87 chr4 132859022 132859160 -22770960 - RLTR25B LTR ERVK -456 572 441 1 1598 330 208 18 127 chr4 132859072 132859182 -22770938 - MT2B LTR ERVL -323 278 181 1 1598 553 206 10 0 chr4 132859089 132859186 -22770934 - B1_Mur1 SINE Alu -39 110 13 1 1598 408 316 48 81 chr4 132859186 132859294 -22770826 - B4 SINE B4 -88 199 2 1 1598 309 255 136 68 chr4 132859761 132859879 -22770241 - B1F SINE Alu 0 149 24 1 1598 304 257 107 27 chr4 132859879 132859991 -22770129 - MIRb SINE MIR -114 154 34 1 1598 615 250 14 7 chr4 132860435 132860576 -22769544 - ID_B1 SINE B4 -2 222 81 1 1598 1320 80 6 6 chr4 132860596 132860772 -22769348 - B2_Mm2 SINE B2 -19 176 1 1 1598 29 0 0 0 chr4 132860783 132860812 -22769308 + AT_rich Low_complexity Low_complexity 1 29 0 1 1598 271 173 417 0 chr4 132860825 132860952 -22769168 - B3A SINE B2 -18 180 1 1 1598 21 0 0 0 chr4 132860962 132860983 -22769137 + AT_rich Low_complexity Low_complexity 1 21 0 1 1598 409 294 25 181 chr4 132860983 132861111 -22769009 + ID_B1 SINE B4 2 92 -132 1 1598 572 239 110 8 chr4 132861111 132861224 -22768896 + B1_Mur1 SINE Alu 2 126 -23 1 1598 772 117 18 182 chr4 132861224 132861400 -22768720 + B1_Mur4 SINE Alu 1 149 0 1 1598 450 226 46 46 chr4 132861447 132861577 -22768543 + RSINE1 SINE B4 15 144 -21 1 1598 1436 48 26 26 chr4 132862045 132862236 -22767884 - B2_Mm1t SINE B2 -2 191 1 1 1598 846 176 49 0 chr4 132862239 132862381 -22767739 - B1_Mur2 SINE Alu 0 149 1 1 1598 500 205 47 0 chr4 132862678 132862786 -22767334 + PB1D10 SINE Alu 1 115 -34 1 1598 271 24 0 0 chr4 132862999 132863041 -22767079 - L1Md_T LINE L1 0 6582 6541 1 1598 1372 104 16 0 chr4 132863070 132863262 -22766858 + B2_Mm2 SINE B2 1 195 0 1 1598 215 322 157 33 chr4 132863987 132864178 -22765942 - MIR SINE MIR -19 243 33 1 1598 330 328 15 15 chr4 132864392 132864538 -22765582 + ID4 SINE ID 1 146 -6 1 1598 229 350 24 40 chr4 132865081 132865206 -22764914 + ZP3AR Satellite Satellite 16 138 -74 1 1598 226 354 13 0 chr4 132865264 132865343 -22764777 + ID4_ SINE ID 3 82 -1 1 1598 195 42 0 0 chr4 132865417 132865441 -22764679 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 1 1598 499 316 6 50 chr4 132866140 132866300 -22763820 + RSINE1 SINE B4 11 163 -2 1 1598 847 151 0 70 chr4 132866322 132866460 -22763660 + B1_Mur4 SINE Alu 5 137 -13 1 1598 288 0 0 0 chr4 132866460 132866492 -22763628 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1598 847 151 0 70 chr4 132866492 132866510 -22763610 + B1_Mur4 SINE Alu 138 150 0 1 1598 1168 99 34 34 chr4 132866573 132866751 -22763369 + B2_Mm1t SINE B2 2 179 -14 1 1598 391 124 0 5 chr4 132866798 132866863 -22763257 + B2_Mm2 SINE B2 47 109 -107 1 1598 750 289 142 72 chr4 132867287 132867857 -22762263 + RLTR18 LTR ERVK 6 615 -1 1 1598 775 169 0 0 chr4 132867886 132868004 -22762116 + PB1D9 SINE Alu 2 119 -1 1 1598 373 235 225 44 chr4 132868161 132868321 -22761799 + ID_B1 SINE B4 25 213 -11 1 1598 1323 72 0 67 chr4 132868408 132868562 -22761558 + B2_Mm2 SINE B2 1 154 -41 1 1598 1477 70 21 0 chr4 132868562 132868749 -22761371 - B2_Mm1t SINE B2 -1 192 2 1 1598 1323 72 0 67 chr4 132868749 132868788 -22761332 + B2_Mm2 SINE B2 155 181 -14 1 1598 267 310 71 12 chr4 132868944 132869029 -22761091 + RSINE1 SINE B4 64 153 -12 1 1598 210 290 157 9 chr4 132869859 132869967 -22760153 - MIRc SINE MIR -31 237 114 1 1598 734 190 207 28 chr4 132870181 132870360 -22759760 + B3 SINE B2 1 211 -5 1 1598 1103 102 0 0 chr4 132870377 132870524 -22759596 + B1_Mus2 SINE Alu 1 147 0 1 1598 452 128 0 13 chr4 132870527 132870606 -22759514 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1 1598 1155 300 71 27 chr4 132871804 132872212 -22757908 + MLT1D LTR MaLR 6 431 -74 1 1598 458 256 25 17 chr4 132872216 132872335 -22757785 + PB1D9 SINE Alu 1 120 0 1 1598 440 297 115 0 chr4 132872379 132872527 -22757593 + B3 SINE B2 28 192 -24 1 1598 365 253 51 0 chr4 132872641 132872720 -22757400 - PB1D10 SINE Alu -9 108 26 1 1598 225 263 0 0 chr4 132872859 132872916 -22757204 - RSINE1 SINE B4 -107 58 2 1 1598 374 308 0 32 chr4 132872935 132873029 -22757091 - RSINE1 SINE B4 -1 164 74 1 1598 497 208 10 10 chr4 132873091 132873188 -22756932 + B4A SINE B4 134 230 -62 1 1598 841 194 14 7 chr4 132873191 132873336 -22756784 + B1_Mur2 SINE Alu 3 148 -1 1 1598 219 119 214 0 chr4 132873354 132873396 -22756724 + B3 SINE B2 3 53 -163 1 1598 1257 36 18 0 chr4 132873553 132873720 -22756400 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 1 1598 403 333 44 0 chr4 132873720 132873834 -22756286 + ID_B1 SINE B4 24 142 -82 1 1598 3324 184 125 85 chr4 132873836 132874638 -22755482 + RMER19B LTR ERVK 1 865 -37 1 1598 1260 47 0 0 chr4 132874638 132874786 -22755334 + B1_Mus1 SINE Alu 1 148 0 1 1598 3324 184 125 85 chr4 132874786 132874839 -22755281 + RMER19B LTR ERVK 866 890 -12 1 1598 436 125 106 59 chr4 132874852 132874923 -22755197 + B1_Mus2 SINE Alu 58 137 -10 1 1598 215 61 30 0 chr4 132874923 132874956 -22755164 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 1 1598 436 125 106 59 chr4 132874956 132874969 -22755151 + B1_Mus2 SINE Alu 138 146 -1 1 1598 1227 61 0 0 chr4 132875241 132875388 -22754732 + B1_Mus2 SINE Alu 1 147 0 1 1598 885 242 16 0 chr4 132875653 132875835 -22754285 - MER58A DNA MER1_type 0 224 40 1 1598 749 231 162 29 chr4 132875839 132876116 -22754004 + L1M4 LINE L1 4641 4954 -1192 1 1598 269 241 40 139 chr4 132876439 132876540 -22753580 + RSINE1 SINE B4 41 131 -34 1 1598 231 308 9 61 chr4 132876615 132876729 -22753391 + PB1D10 SINE Alu 3 110 -7 1 1598 344 317 0 0 chr4 132876733 132876834 -22753286 + L1M4 LINE L1 5599 5699 -479 1 1598 501 47 0 0 chr4 132876834 132876898 -22753222 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1598 225 297 224 43 chr4 132877018 132877134 -22752986 + ID_B1 SINE B4 80 216 -8 1 1598 1192 68 0 0 chr4 132877145 132877292 -22752828 + B1_Mus1 SINE Alu 2 148 0 1 1598 701 269 76 65 chr4 132877415 132877690 -22752430 + MER2 DNA MER2_type 68 345 0 1 1598 384 278 48 77 chr4 132877712 132877745 -22752375 + B4A SINE B4 71 198 -94 1 1598 855 117 8 0 chr4 132877745 132877873 -22752247 + B1_Mus2 SINE Alu 19 147 0 1 1598 410 19 37 0 chr4 132877891 132877945 -22752175 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 1 1598 256 232 0 51 chr4 132877956 132878024 -22752096 + B4A SINE B4 73 130 -94 1 1598 1010 260 9 9 chr4 132878243 132878453 -22751667 - B3 SINE B2 -6 210 1 1 1598 216 269 0 0 chr4 132878495 132878562 -22751558 + A-rich Low_complexity Low_complexity 1 67 0 1 1598 550 200 136 0 chr4 132878886 132878996 -22751124 - B1_Mur2 SINE Alu -8 141 17 1 1598 207 0 0 0 chr4 132879098 132879121 -22750999 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1598 761 72 116 9 chr4 132879121 132879233 -22750887 - B1_Mus1 SINE Alu -2 146 23 1 1598 531 250 9 0 chr4 132879591 132879707 -22750413 + URR1B DNA MER1_type 3 119 -106 1 1598 333 239 106 81 chr4 132880292 132880415 -22749705 - RSINE1 SINE B4 -36 129 4 1 1598 27 0 0 0 chr4 132880415 132880442 -22749678 + AT_rich Low_complexity Low_complexity 1 27 0 1 1598 617 281 115 0 chr4 132880442 132880634 -22749486 - B3 SINE B2 -2 214 1 1 1598 931 148 63 37 chr4 132880645 132880834 -22749286 - B2_Mm2 SINE B2 0 195 2 1 1598 694 187 82 62 chr4 132880840 132881034 -22749086 - B3A SINE B2 0 198 1 1 1598 205 281 11 13 chr4 132881390 132881480 -22748640 - MIRb SINE MIR -190 86 3 1 1598 323 261 62 102 chr4 132881757 132881885 -22748235 + MT2B LTR ERVL 155 277 -324 1 1598 842 114 7 36 chr4 132881777 132881914 -22748206 + B1_Mur4 SINE Alu 18 150 0 1 1598 1231 54 0 0 chr4 132881968 132882115 -22748005 + B1_Mus2 SINE Alu 1 147 0 1 1598 402 293 19 39 chr4 132882986 132883089 -22747031 + RSINE1 SINE B4 56 156 -9 1 1598 386 257 40 81 chr4 132883162 132883310 -22746810 + MIRb SINE MIR 122 263 -5 1 1598 1443 77 0 35 chr4 132883385 132883587 -22746533 + B2_Mm2 SINE B2 1 195 0 1 1598 294 234 105 0 chr4 132883832 132883920 -22746200 + PB1D10 SINE Alu 2 100 -49 1 1598 500 286 84 12 chr4 132883920 132884086 -22746034 + B4 SINE B4 1 178 -114 1 1598 503 257 93 20 chr4 132884108 132884259 -22745861 + RSINE1 SINE B4 2 163 -2 1 1598 494 264 150 3 chr4 132884501 132884824 -22745296 - L1MB5 LINE L1 -52 6122 5753 1 1598 432 282 50 149 chr4 132884859 132884950 -22745170 + ID SINE ID 3 78 -146 1 1598 529 226 9 0 chr4 132884950 132885056 -22745064 + PB1D9 SINE Alu 2 108 -12 1 1598 207 0 0 0 chr4 132885056 132885079 -22745041 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 1598 432 282 50 149 chr4 132885079 132885228 -22744892 + ID_B1 SINE B4 79 219 -5 1 1598 1233 84 12 0 chr4 132885344 132885511 -22744609 + B2_Mm1a SINE B2 1 169 -24 1 1598 249 265 59 0 chr4 132885514 132885582 -22744538 + ID4 SINE ID 11 82 -1 1 1598 262 250 119 43 chr4 132885604 132885719 -22744401 + B1_Mus1 SINE Alu 2 113 -35 1 1598 859 42 246 0 chr4 132885760 132885878 -22744242 + B1_Mus1 SINE Alu 2 148 0 1 1598 296 301 111 39 chr4 132886015 132886195 -22743925 + B2_Mm2 SINE B2 1 193 -2 1 1598 181 277 248 9 chr4 132886571 132886684 -22743436 + MIRc SINE MIR 9 148 -120 1 1598 392 234 140 0 chr4 132886690 132886797 -22743323 + ID_B1 SINE B4 81 202 -22 1 1598 1205 148 120 9 chr4 132886806 132887031 -22743089 - ORR1D1 LTR MaLR -124 250 1 1 1598 518 284 0 0 chr4 132887050 132887159 -22742961 + RSINE1 SINE B4 3 111 -54 1 1598 427 292 124 0 chr4 132887559 132887696 -22742424 - MIR SINE MIR -46 216 63 1 1598 823 141 21 21 chr4 132887963 132888108 -22742012 + B1_Mur4 SINE Alu 4 148 -2 1 1598 333 340 0 10 chr4 132888149 132888247 -22741873 + PB1D10 SINE Alu 9 105 -12 1 1598 180 0 0 0 chr4 132888247 132888267 -22741853 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1598 272 61 0 58 chr4 132888308 132888360 -22741760 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1598 236 300 37 12 chr4 132888415 132888496 -22741624 + PB1D10 SINE Alu 30 112 -5 1 1598 186 356 66 42 chr4 132889228 132889395 -22740725 + MIRb SINE MIR 21 191 -77 1 1598 282 256 0 55 chr4 132889621 132889712 -22740408 - PB1 SINE Alu -37 90 5 1 1598 346 339 79 54 chr4 132890104 132890307 -22739813 + MIRb SINE MIR 55 262 -6 1 1598 235 233 114 181 chr4 132890421 132890526 -22739594 + PB1D9 SINE Alu 11 108 -12 1 1598 326 355 24 24 chr4 132890596 132890720 -22739400 - L3 LINE CR1 -236 4253 4130 1 1598 737 98 0 9 chr4 132890840 132890953 -22739167 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 1 1598 1391 80 0 26 chr4 132890953 132891145 -22738975 - B2_Mm2 SINE B2 -8 187 1 1 1598 910 118 7 7 chr4 132891145 132891282 -22738838 - B1_Mus2 SINE Alu 0 147 11 1 1598 486 174 53 76 chr4 132891171 132891302 -22738818 - MT2B LTR ERVL -322 279 152 1 1598 212 297 121 43 chr4 132891638 132891754 -22738366 + B1F SINE Alu 18 142 -7 1 1598 383 221 0 25 chr4 132891995 132892074 -22738046 + ID2 SINE ID 5 81 -2 1 1598 1255 79 45 0 chr4 132892201 132892379 -22737741 + B2_Mm2 SINE B2 1 186 -9 1 1598 505 204 76 26 chr4 132892415 132892563 -22737557 + B3 SINE B2 35 184 -9 1 1598 499 227 0 40 chr4 132892603 132892727 -22737393 + PB1D7 SINE Alu 2 120 0 1 1598 1071 211 14 23 chr4 132892841 132893055 -22737065 + B3 SINE B2 5 216 0 1 1598 1024 129 0 0 chr4 132893422 132893569 -22736551 + B1_Mus2 SINE Alu 1 147 0 1 1598 414 308 76 15 chr4 132893589 132893615 -22736505 + B1F SINE Alu 2 141 -8 1 1598 447 283 38 0 chr4 132893615 132893721 -22736399 + ID_B1 SINE B4 107 216 -8 1 1598 450 36 0 0 chr4 132894319 132894375 -22735745 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1598 376 200 9 9 chr4 132894377 132894488 -22735632 + GA-rich Low_complexity Low_complexity 2 112 0 1 1598 276 237 91 58 chr4 132896144 132896265 -22733855 - MIR SINE MIR -99 163 39 1 1598 1150 116 47 0 chr4 132896306 132896478 -22733642 + B2_Mm2 SINE B2 2 181 -14 1 1598 373 99 380 0 chr4 132896513 132896613 -22733507 + B2_Mm2 SINE B2 50 187 -8 1 1598 225 0 0 0 chr4 132896770 132896795 -22733325 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1 1598 424 255 123 0 chr4 132896829 132896935 -22733185 + B1_Mur1 SINE Alu 31 149 0 1 1598 855 226 27 27 chr4 132897171 132897357 -22732763 - B2_Mm2 SINE B2 -8 187 2 1 1598 1433 191 127 33 chr4 132897674 132898005 -22732115 + MTD LTR MaLR 58 419 0 1 1598 258 319 28 0 chr4 132898043 132898115 -22732005 + ID4 SINE ID 10 83 0 1 1598 651 26 0 0 chr4 132898571 132898648 -22731472 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1598 329 296 23 0 chr4 132898675 132898763 -22731357 - RSINE1 SINE B4 -22 143 54 1 1598 580 295 46 19 chr4 132899308 132899494 -22730626 + ID_B1 SINE B4 77 275 -17 1 1598 236 291 107 33 chr4 132899587 132899708 -22730412 + MER3 DNA MER1_type 26 155 -54 1 1598 266 374 25 34 chr4 132899999 132900118 -22730002 + PB1D7 SINE Alu 3 120 0 1 1598 270 0 0 0 chr4 132900305 132900335 -22729785 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1598 832 187 14 0 chr4 132900733 132900872 -22729248 + B1_Mus2 SINE Alu 2 142 -5 1 1598 306 188 35 0 chr4 132900950 132901035 -22729085 + Lx2B LINE L1 6908 6995 -5 1 1598 1192 68 7 0 chr4 132901040 132901186 -22728934 - B1_Mus1 SINE Alu 0 148 2 1 1598 23 33 0 0 chr4 132901191 132901221 -22728899 + AT_rich Low_complexity Low_complexity 1 30 0 1 1598 1117 233 104 37 chr4 132901402 132901697 -22728423 - MTD LTR MaLR 0 419 105 1 1598 924 116 0 0 chr4 132901697 132901826 -22728294 + B2_Mm2 SINE B2 1 129 -66 1 1598 536 239 100 0 chr4 132902170 132902300 -22727820 - B1F SINE Alu -1 148 6 1 1598 617 97 75 0 chr4 132902333 132902426 -22727694 - B1_Mus2 SINE Alu -5 142 43 1 1598 203 280 12 62 chr4 132902471 132902551 -22727569 - L2b LINE L2 -221 3154 3079 1 1598 856 123 7 7 chr4 132903073 132903212 -22726908 + B1_Mus1 SINE Alu 10 148 0 1 1598 283 304 14 0 chr4 132903294 132903363 -22726757 - ID4 SINE ID -11 72 3 1 1598 792 206 13 95 chr4 132903371 132903602 -22726518 - B3 SINE B2 -4 212 1 1 1598 842 233 20 45 chr4 132903631 132903833 -22726287 - B3A SINE B2 0 198 2 1 1598 253 333 42 92 chr4 132904191 132904310 -22725810 + PB1D10 SINE Alu 3 115 -2 1 1598 860 238 28 5 chr4 132904349 132904560 -22725560 + ID_B1 SINE B4 5 220 -4 1 1598 258 222 0 0 chr4 132904589 132904634 -22725486 + B1F2 SINE Alu 6 50 -99 1 1598 349 186 35 37 chr4 132904645 132904763 -22725357 + L1M5 LINE L1 3854 4003 -2143 1 1598 1058 55 6 76 chr4 132904817 132904975 -22725145 - B1_Mus1 SINE Alu 0 148 2 1 1598 968 145 0 12 chr4 132904975 132905143 -22724977 + MYSERV6-int LTR ERVK 4734 4899 -4060 1 1598 625 95 0 0 chr4 132905147 132905231 -22724889 - BC1_Mm scRNA scRNA -68 84 1 1 1598 261 140 52 17 chr4 132905232 132905290 -22724830 + MYSERV6-int LTR ERVK 4892 4951 -4008 1 1598 733 135 0 9 chr4 132905328 132905440 -22724680 - B3 SINE B2 -105 111 1 1 1598 3745 159 83 30 chr4 132905440 132906707 -22723413 + MYSERV6-int LTR ERVK 4934 6266 -2693 1 1598 207 0 0 0 chr4 132906707 132906730 -22723390 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1598 920 94 0 30 chr4 132906730 132906858 -22723262 - B1_Mus1 SINE Alu -7 141 18 1 1598 226 189 0 0 chr4 132906858 132906895 -22723225 + B1_Mur4 SINE Alu 2 38 -112 1 1598 501 135 84 28 chr4 132906867 132906974 -22723146 + B2_Mm1t SINE B2 81 193 0 1 199 352 150 6 48 chr4 132906983 132907060 -22723060 + B1_Mus1 SINE Alu 2 72 -45 1 1599 327 162 0 150 chr4 132907060 132907140 -22722980 + B1_Mus1 SINE Alu 2 69 -79 1 1599 315 87 343 14 chr4 132907142 132907212 -22722908 + MYSERV6-int LTR ERVK 6408 6500 -2459 1 1599 214 341 11 42 chr4 132907220 132907315 -22722805 + B1F2 SINE Alu 14 105 -44 1 1599 736 139 69 15 chr4 132907312 132907443 -22722677 + B1_Mus1 SINE Alu 11 148 0 1 1599 1026 181 60 10 chr4 132907498 132907699 -22722421 + B3 SINE B2 1 211 -5 1 1599 1266 34 0 0 chr4 132907702 132907850 -22722270 + B1_Mus1 SINE Alu 1 148 0 1 1599 346 143 56 14 chr4 132907886 132907957 -22722163 + PB1D9 SINE Alu 44 117 -3 1 1599 337 229 131 30 chr4 132907958 132908057 -22722063 + PB1D9 SINE Alu 2 110 -10 1 1599 234 0 0 0 chr4 132908057 132908083 -22722037 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1599 693 216 13 51 chr4 132908241 132908397 -22721723 + B1_Mur4 SINE Alu 1 150 0 1 1599 585 0 0 0 chr4 132909093 132909158 -22720962 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1599 687 151 20 54 chr4 132909158 132909297 -22720823 - B1F SINE Alu -8 141 8 1 1599 288 313 128 15 chr4 132909305 132909438 -22720682 - B1F1 SINE Alu -1 148 1 1 1599 237 213 158 69 chr4 132910068 132910169 -22719951 - L1MD3 LINE L1 -454 7541 7432 1 1599 996 96 7 40 chr4 132910286 132910438 -22719682 - B1_Mus1 SINE Alu 0 148 2 1 1599 301 70 0 34 chr4 132910464 132910523 -22719597 + (TTG)n Simple_repeat Simple_repeat 1 57 0 1 1599 339 25 0 0 chr4 132910544 132910584 -22719536 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1599 442 212 53 0 chr4 132910605 132910718 -22719402 - ID_B1 SINE B4 -2 222 104 1 1599 1400 89 5 5 chr4 132910811 132911003 -22719117 + B2_Mm1a SINE B2 1 192 -1 1 1599 437 226 68 0 chr4 132911057 132911190 -22718930 - L1MD3 LINE L1 -909 7086 6945 1 1599 188 35 35 0 chr4 132911193 132911222 -22718898 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1599 1157 69 7 0 chr4 132911222 132911367 -22718753 - B1_Mus2 SINE Alu -1 146 1 1 1599 622 277 0 37 chr4 132911482 132911673 -22718447 - L1MD3 LINE L1 -1102 6893 6710 1 1599 460 221 8 34 chr4 132911729 132911846 -22718274 - PB1D10 SINE Alu -3 114 1 1 1599 315 212 88 0 chr4 132911855 132911935 -22718185 - L1ME3B LINE L1 -6 6234 6148 1 1599 1051 82 0 33 chr4 132912305 132912457 -22717663 + B1_Mus1 SINE Alu 2 148 0 1 1599 1368 67 0 0 chr4 132912457 132912637 -22717483 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1599 692 233 116 6 chr4 132912648 132912812 -22717308 + ID_B1 SINE B4 9 190 -34 1 1599 767 177 17 17 chr4 132912816 132913058 -22717062 + (TA)n Simple_repeat Simple_repeat 1 242 0 1 1599 256 292 59 50 chr4 132913126 132913227 -22716893 + MT2B2 LTR ERVL 156 257 -327 1 1599 536 223 84 8 chr4 132913141 132913272 -22716848 + B1F SINE Alu 9 149 0 1 1599 326 261 31 61 chr4 132913278 132913376 -22716744 + PB1D10 SINE Alu 4 98 -19 1 1599 1094 81 0 0 chr4 132913383 132913519 -22716601 + B1_Mm SINE Alu 2 137 -10 1 1599 440 314 35 62 chr4 132913594 132913885 -22716235 + B4A SINE B4 2 269 -23 1 1599 384 40 0 0 chr4 132913885 132913935 -22716185 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1599 433 336 25 107 chr4 132913935 132913960 -22716160 + B4 SINE B4 270 292 0 1 1599 852 10 0 0 chr4 132914169 132914266 -22715854 + (TATTG)n Simple_repeat Simple_repeat 2 98 0 1 1599 368 196 113 113 chr4 132914266 132914381 -22715739 - B1_Mur2 SINE Alu -10 139 25 1 1599 934 150 7 0 chr4 132914476 132914623 -22715497 - B1_Mur4 SINE Alu 0 150 3 1 1599 1276 102 21 0 chr4 132914627 132914813 -22715307 - B2_Mm1t SINE B2 -3 190 1 1 1599 338 366 92 0 chr4 132914832 132914884 -22715236 - RSINE1 SINE B4 -10 155 3 1 1599 533 193 0 0 chr4 132914884 132914972 -22715148 - B3A SINE B2 -109 89 2 1 1599 299 85 0 21 chr4 132915471 132915519 -22714601 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 1 1599 180 0 0 0 chr4 132915524 132915544 -22714576 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1599 1066 86 0 0 chr4 132915725 132915865 -22714255 - B1_Mus1 SINE Alu -2 146 7 1 1599 1010 229 26 22 chr4 132915863 132916095 -22714025 - RMER5 LTR ERV1 -301 233 1 1 1599 366 262 38 0 chr4 132916128 132916208 -22713912 + B3A SINE B2 72 154 -44 1 1599 408 67 0 0 chr4 132916208 132916268 -22713852 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1599 780 69 0 0 chr4 132916322 132916423 -22713697 - B1_Mm SINE Alu 0 147 47 1 1599 315 215 0 97 chr4 132916367 132916439 -22713681 - MT2B LTR ERVL -344 257 193 1 1599 681 144 48 0 chr4 132916469 132916573 -22713547 + B1_Mur3 SINE Alu 7 115 -34 1 1599 1137 77 0 0 chr4 132916608 132916751 -22713369 - B1_Mus2 SINE Alu -1 146 4 1 1599 933 187 15 41 chr4 132916757 132916952 -22713168 - B3 SINE B2 0 216 27 1 1599 358 266 257 0 chr4 132917257 132917370 -22712750 + B1F2 SINE Alu 1 142 -7 1 1599 362 257 97 45 chr4 132917555 132917710 -22712410 + RSINE1 SINE B4 3 165 0 1 1599 571 243 9 0 chr4 132917783 132917894 -22712226 + B1F SINE Alu 33 144 -5 1 1599 388 174 102 23 chr4 132918020 132918108 -22712012 - B1_Mur3 SINE Alu -54 95 1 1 1599 369 109 0 0 chr4 132918122 132918177 -22711943 + (TCC)n Simple_repeat Simple_repeat 3 57 0 1 1599 1214 34 7 0 chr4 132918254 132918400 -22711720 + B1_Mus1 SINE Alu 1 147 -1 1 1599 1218 118 11 21 chr4 132918455 132918645 -22711475 + B2_Mm1t SINE B2 1 188 -5 1 1599 4123 99 108 49 chr4 132918678 132918981 -22711139 - RMER6A LTR ERVK -3 753 439 1 1599 189 0 0 0 chr4 132918981 132919002 -22711118 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1599 4123 99 108 49 chr4 132919002 132919019 -22711101 - RMER6A LTR ERVK -318 438 438 1 1599 1106 85 0 0 chr4 132919019 132919160 -22710960 - B1_Mus1 SINE Alu -7 141 1 1 1599 4123 99 108 49 chr4 132919160 132919549 -22710571 - RMER6A LTR ERVK -318 438 1 1 1599 224 308 112 149 chr4 132919549 132919656 -22710464 + B4A SINE B4 16 118 -174 1 1599 420 20 0 0 chr4 132919660 132919709 -22710411 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1599 920 169 0 0 chr4 132919723 132919871 -22710249 + B1_Mus1 SINE Alu 1 148 0 1 1599 669 282 5 22 chr4 132919896 132920081 -22710039 - B3A SINE B2 -15 183 2 1 1599 330 190 85 37 chr4 132920095 132920177 -22709943 - PB1 SINE Alu 0 127 42 1 1599 959 35 0 0 chr4 132920533 132920649 -22709471 - B1_Mus1 SINE Alu 0 148 33 1 1599 625 246 37 108 chr4 132920649 132920747 -22709373 - ID_B1 SINE B4 0 224 26 1 1599 434 132 0 35 chr4 132920767 132920853 -22709267 + T-rich Low_complexity Low_complexity 1 83 0 1 1599 1225 27 0 27 chr4 132920853 132921003 -22709117 - B1_Mm SINE Alu 0 147 2 1 1599 1026 44 0 0 chr4 132921003 132921139 -22708981 + (TTTC)n Simple_repeat Simple_repeat 4 139 0 1 1599 645 132 202 42 chr4 132921139 132921258 -22708862 - B1_Mur4 SINE Alu -12 138 1 1 1599 425 286 0 10 chr4 132921419 132921518 -22708602 + PB1D10 SINE Alu 20 117 0 1 1599 405 0 0 0 chr4 132921571 132921616 -22708504 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1599 198 0 0 0 chr4 132921616 132921637 -22708483 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1599 1449 79 16 5 chr4 132921703 132921894 -22708226 + B2_Mm2 SINE B2 2 194 -1 1 1599 189 339 104 26 chr4 132922031 132922146 -22707974 - MIR SINE MIR -34 228 105 1 1599 302 385 7 27 chr4 132922491 132922638 -22707482 + MIR SINE MIR 24 167 -95 1 1599 284 329 13 0 chr4 132922722 132922801 -22707319 - ID4_ SINE ID -3 80 1 1 1599 1327 61 9 14 chr4 132922805 132922998 -22707122 - B2_Mm2 SINE B2 0 216 15 1 1599 303 291 9 28 chr4 132923023 132923129 -22706991 - ID_B1 SINE B4 -3 221 118 1 1599 257 249 0 29 chr4 132923221 132923305 -22706815 - ID4 SINE ID -49 103 25 1 1599 445 280 118 42 chr4 132923371 132923576 -22706544 - B4A SINE B4 0 292 81 1 1599 1091 55 0 14 chr4 132923668 132923816 -22706304 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 1 1599 245 300 0 0 chr4 132924288 132924348 -22705772 + BC1_Mm scRNA scRNA 16 75 -77 1 1599 359 271 91 27 chr4 132924429 132924446 -22705674 + ID SINE ID 60 83 -141 1 1599 441 209 43 9 chr4 132924446 132924565 -22705555 + B1F SINE Alu 2 120 0 1 1599 285 29 0 0 chr4 132924629 132924663 -22705457 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 1 1599 302 231 44 111 chr4 132924704 132924802 -22705318 + MLT1C LTR MaLR 1 92 -298 1 1599 180 0 0 0 chr4 132924802 132924822 -22705298 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1599 498 294 19 0 chr4 132924827 132924966 -22705154 - B1F SINE Alu -5 144 1 1 1599 568 288 161 15 chr4 132924967 132925228 -22704892 + MLT1C LTR MaLR 83 381 -86 1 1599 233 268 155 0 chr4 132925250 132925321 -22704799 - ID4_ SINE ID 0 83 2 1 1599 458 297 43 0 chr4 132925326 132925464 -22704656 - MIR SINE MIR -46 216 73 1 1599 198 0 0 0 chr4 132925511 132925533 -22704587 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1599 200 214 123 41 chr4 132927569 132927642 -22702478 - L3 LINE CR1 -3492 997 919 1 1599 206 251 46 30 chr4 132928625 132928745 -22701375 + MIR SINE MIR 57 208 0 1 1599 215 227 23 0 chr4 132928714 132928758 -22701362 + MIR3 SINE MIR 116 160 -48 1 1599 192 40 0 0 chr4 132929290 132929315 -22700805 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 1 1599 1065 216 18 18 chr4 132929847 132930069 -22700051 + ID_B1 SINE B4 2 223 -1 1 1599 229 163 0 39 chr4 132930476 132930527 -22699593 + T-rich Low_complexity Low_complexity 6 54 0 1 1599 833 150 98 0 chr4 132930527 132930660 -22699460 - B1_Mus1 SINE Alu 0 148 3 1 1599 573 141 0 0 chr4 132931185 132931284 -22698836 + (TG)n Simple_repeat Simple_repeat 1 99 0 1 1599 235 273 18 92 chr4 132931331 132931440 -22698680 - MTEb LTR MaLR -7 372 272 1 1599 292 302 167 23 chr4 132931742 132931874 -22698246 - MIRb SINE MIR 0 268 118 1 1599 208 139 0 0 chr4 132932611 132932647 -22697473 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1599 1105 63 0 0 chr4 132932658 132932800 -22697320 - B1_Mus1 SINE Alu 0 148 7 1 1599 378 221 50 66 chr4 132932813 132932934 -22697186 - PB1D9 SINE Alu 0 120 2 1 1599 324 177 122 119 chr4 132932988 132933104 -22697016 + PB1D9 SINE Alu 7 114 -6 1 1599 1554 68 0 0 chr4 132933125 132933317 -22696803 + B2_Mm1a SINE B2 2 193 0 1 1599 213 39 0 0 chr4 132934325 132934351 -22695769 + (CCCG)n Simple_repeat Simple_repeat 3 28 0 1 1599 1116 0 0 0 chr4 132935419 132935543 -22694577 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 1 1599 289 192 19 0 chr4 132935552 132935604 -22694516 - U7 snRNA snRNA -9 54 2 1 1599 621 0 0 0 chr4 132935676 132935745 -22694375 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 1 1599 22 35 0 0 chr4 132936257 132936286 -22693834 + AT_rich Low_complexity Low_complexity 1 29 0 1 1599 393 340 87 68 chr4 132936927 132937192 -22692928 + RCHARR1 DNA MER1_type 37 306 -668 1 1599 291 295 27 45 chr4 132937199 132937309 -22692811 - ID_B1 SINE B4 -26 198 91 1 1599 323 186 16 33 chr4 132937364 132937425 -22692695 - ORR1E LTR MaLR 0 359 300 1 1599 346 276 75 82 chr4 132937414 132937560 -22692560 + B3 SINE B2 45 189 -6 1 1599 339 230 232 49 chr4 132937539 132937681 -22692439 - ORR1E LTR MaLR -41 318 151 1 1599 560 128 0 13 chr4 132937669 132937765 -22692355 - B1_Mur3 SINE Alu -11 109 16 1 1599 1370 96 0 5 chr4 132937765 132937953 -22692167 - B2_Mm2 SINE B2 -7 188 2 1 1599 1116 103 108 6 chr4 132937965 132938141 -22691979 - B2_Mm2 SINE B2 -1 194 1 1 1599 504 309 33 20 chr4 132938142 132938294 -22691826 - ORR1E LTR MaLR -200 159 6 1 1599 662 236 14 97 chr4 132938363 132938579 -22691541 - B3A SINE B2 0 198 1 1 1599 495 48 0 0 chr4 132938588 132938650 -22691470 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1599 594 231 44 7 chr4 132938664 132938799 -22691321 - B1F SINE Alu -9 140 1 1 1599 1027 70 7 7 chr4 132938853 132938983 -22691137 + B2_Mm1t SINE B2 50 180 -13 1 1599 1237 34 0 0 chr4 132938983 132939130 -22690990 + B1_Mm SINE Alu 1 147 0 1 1599 1027 70 7 7 chr4 132939130 132939143 -22690977 + B2_Mm1t SINE B2 181 193 0 1 1599 1185 169 34 81 chr4 132939146 132939443 -22690677 + RCHARR1 DNA MER1_type 341 623 -351 1 1599 309 109 0 0 chr4 132939478 132939524 -22690596 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1599 484 292 0 0 chr4 132939535 132939641 -22690479 - RSINE1 SINE B4 -31 134 29 1 1599 371 230 23 11 chr4 132939653 132939741 -22690379 - 4.5SRNA scRNA scRNA -4 90 2 1 1599 1554 176 41 55 chr4 132939749 132939981 -22690139 + RCHARR1 DNA MER1_type 613 835 -139 1 1599 845 194 97 0 chr4 132939981 132940177 -22689943 - B3 SINE B2 0 216 2 1 1599 1554 176 41 55 chr4 132940177 132940310 -22689810 + RCHARR1 DNA MER1_type 836 973 -1 1 1599 272 326 14 64 chr4 132940339 132940480 -22689640 - MT2B LTR ERVL -299 302 169 1 1599 498 241 46 0 chr4 132940376 132940484 -22689636 - B1_Mur1 SINE Alu -36 113 1 1 1599 315 0 0 0 chr4 132942267 132942302 -22687818 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1599 378 301 120 0 chr4 132942471 132942604 -22687516 - B1F SINE Alu 0 149 1 1 1599 612 0 0 0 chr4 132942626 132942694 -22687426 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1599 385 272 39 10 chr4 132942819 132942923 -22687197 - B4A SINE B4 -174 118 12 1 1599 336 221 0 0 chr4 132942934 132943011 -22687109 + C-rich Low_complexity Low_complexity 5 81 0 1 1599 277 126 0 132 chr4 132943016 132943069 -22687051 + B1_Mur2 SINE Alu 61 108 -41 1 1599 727 314 6 6 chr4 132943075 132943245 -22686875 - ID_B1 SINE B4 -53 171 2 1 1599 790 130 7 7 chr4 132943704 132943859 -22686261 + (TG)n Simple_repeat Simple_repeat 1 155 0 1 1599 416 167 10 0 chr4 132943887 132943983 -22686137 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1599 873 153 0 0 chr4 132944011 132944187 -22685933 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1599 1265 27 0 7 chr4 132944346 132944494 -22685626 + B1_Mm SINE Alu 1 147 0 1 1599 1542 72 0 5 chr4 132944522 132944717 -22685403 + B2_Mm2 SINE B2 2 195 0 1 1599 321 237 43 0 chr4 132944724 132944817 -22685303 - PB1D7 SINE Alu -21 99 3 1 1599 355 312 78 0 chr4 132946613 132946767 -22683353 - MIR3 SINE MIR -27 181 16 1 1599 196 365 13 51 chr4 132947949 132948027 -22682093 + MIRc SINE MIR 38 112 -156 1 1599 303 302 77 39 chr4 132948148 132948303 -22681817 - L1ME3 LINE L1 -68 6094 5934 1 1599 511 225 64 14 chr4 132948303 132948443 -22681677 - ID_B1 SINE B4 0 224 78 1 1599 746 38 75 0 chr4 132948456 132948562 -22681558 + B1_Mus1 SINE Alu 35 148 0 1 1599 237 292 40 50 chr4 132948574 132948675 -22681445 - L1ME3 LINE L1 -252 5910 5811 1 1599 302 0 26 0 chr4 132948699 132948737 -22681383 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1599 1258 34 0 0 chr4 132948737 132948876 -22681244 - B1_Mm SINE Alu -7 140 2 1 1599 371 212 29 98 chr4 132948876 132949049 -22681071 - L1ME2z LINE L1 -334 5828 5668 1 1599 22 0 0 0 chr4 132949127 132949149 -22680971 + AT_rich Low_complexity Low_complexity 1 22 0 1 1599 2095 52 4 0 chr4 132949230 132949481 -22680639 + L1_Mus1 LINE L1 6316 6567 0 1 1599 1412 87 16 0 chr4 132949522 132949705 -22680415 + B2_Mm2 SINE B2 1 186 -9 1 1599 642 248 0 7 chr4 132949724 132949862 -22680258 - B1_Mur4 SINE Alu 0 150 14 1 1599 30 27 0 0 chr4 132949948 132949985 -22680135 + AT_rich Low_complexity Low_complexity 1 37 0 1 1599 294 212 37 24 chr4 132949987 132950069 -22680051 + L1MA5 LINE L1 5925 6007 -293 1 1599 351 271 55 0 chr4 132950159 132950288 -22679832 - L1MA5 LINE L1 -59 6241 6100 1 1599 198 348 59 7 chr4 132952325 132952461 -22677659 + MIRb SINE MIR 52 194 -74 1 1599 206 330 55 9 chr4 132952669 132952779 -22677341 - MIRc SINE MIR -134 134 20 1 1599 809 154 81 0 chr4 132952883 132953019 -22677101 + B1_Mur2 SINE Alu 3 149 0 1 1599 264 314 69 0 chr4 132953987 132954089 -22676031 - MIR SINE MIR -87 175 67 1 1599 184 279 95 43 chr4 132954653 132954769 -22675351 - MIR SINE MIR -68 140 19 1 1599 1294 57 97 6 chr4 132956590 132956766 -22673354 - B2_Mm2 SINE B2 -3 192 1 1 1599 363 260 10 31 chr4 132956769 132956888 -22673232 - B1F SINE Alu -1 148 7 1 1599 23 33 0 0 chr4 132956903 132956933 -22673187 + AT_rich Low_complexity Low_complexity 1 30 0 1 1599 410 346 23 0 chr4 132956946 132957079 -22673041 - RSINE1 SINE B4 -15 150 15 1 1599 726 53 0 0 chr4 132957258 132957353 -22672767 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1599 479 223 23 55 chr4 132957357 132957485 -22672635 - B3A SINE B2 -48 150 27 1 1599 582 239 49 14 chr4 132957502 132957646 -22672474 - B1_Mur1 SINE Alu 0 149 1 1 1599 689 238 105 8 chr4 132957666 132957861 -22672259 - B3A SINE B2 -3 213 1 1 1599 21 0 0 0 chr4 132958334 132958355 -22671765 + AT_rich Low_complexity Low_complexity 1 21 0 1 1599 297 0 0 0 chr4 132958557 132958590 -22671530 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1599 207 284 122 12 chr4 132958848 132958930 -22671190 - L2c LINE L2 -210 3177 3087 1 1599 419 222 0 83 chr4 132959036 132959144 -22670976 + PB1D7 SINE Alu 22 120 0 1 1599 237 33 0 0 chr4 132959193 132959223 -22670897 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1599 355 227 13 13 chr4 132960150 132960226 -22669894 - ID4 SINE ID -6 77 2 1 1599 965 138 14 0 chr4 132960251 132960396 -22669724 - B1_Mus2 SINE Alu 0 147 1 1 1599 387 0 0 0 chr4 132960408 132960451 -22669669 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1599 348 24 0 0 chr4 132960535 132960576 -22669544 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1 1599 235 240 0 0 chr4 132960578 132960628 -22669492 - ID4_ SINE ID -31 52 3 1 1599 342 313 16 68 chr4 132960639 132960831 -22669289 - ID_B1 SINE B4 -1 223 42 1 1599 420 246 42 49 chr4 132961155 132961324 -22668796 - RSINE1 SINE B4 0 165 3 1 1599 382 311 0 19 chr4 132961394 132961502 -22668618 - PB1D10 SINE Alu -3 114 9 1 1599 299 323 34 15 chr4 132961549 132961705 -22668415 - MIR SINE MIR -47 161 4 1 1599 324 239 0 14 chr4 132962101 132962173 -22667947 + MIR SINE MIR 70 140 -122 1 1599 1230 68 0 0 chr4 132962930 132963077 -22667043 - B1_Mus1 SINE Alu 0 148 2 1 1599 200 264 198 0 chr4 132963095 132963186 -22666934 + MIR3 SINE MIR 76 184 -24 1 1599 503 312 43 25 chr4 132964410 132964571 -22665549 - RSINE1 SINE B4 0 165 2 1 1599 1152 66 134 29 chr4 132964683 132964855 -22665265 - B2_Mm2 SINE B2 -4 191 2 1 1599 303 209 18 9 chr4 132964906 132965017 -22665103 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1599 284 238 12 24 chr4 132965017 132965099 -22665021 - B4A SINE B4 -210 82 2 1 1599 2810 64 3 0 chr4 132965738 132966083 -22664037 - ORR1A1 LTR MaLR 0 346 1 1 1599 245 279 36 48 chr4 132966797 132966880 -22663240 + MIR SINE MIR 33 114 -94 1 1599 685 248 28 0 chr4 132967358 132967499 -22662621 + RSINE1 SINE B4 20 164 -1 1 1599 298 229 250 0 chr4 132967521 132967617 -22662503 - MIRb SINE MIR -41 227 108 1 1599 811 153 27 20 chr4 132968777 132968924 -22661196 - B1_Mus1 SINE Alu 0 148 1 1 1599 984 195 149 7 chr4 132969319 132969642 -22660478 - MTD LTR MaLR -3 418 6 1 1599 900 101 40 80 chr4 132969994 132970144 -22659976 - B1_Mur4 SINE Alu -5 145 2 1 1599 387 0 0 0 chr4 132970189 132970232 -22659888 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1599 549 200 95 0 chr4 132970232 132970337 -22659783 - B1_Mus1 SINE Alu -32 116 2 1 1599 244 387 45 54 chr4 132970874 132970986 -22659134 - MIR SINE MIR -62 206 89 1 1599 645 14 0 0 chr4 132972441 132972515 -22657605 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1599 262 282 123 41 chr4 132973250 132973304 -22656816 - B4A SINE B4 -13 279 213 1 1599 180 0 0 0 chr4 132973304 132973324 -22656796 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1599 523 241 0 0 chr4 132973331 132973439 -22656681 - PB1D7 SINE Alu -2 118 11 1 1599 304 272 63 14 chr4 132974095 132974211 -22655909 + MIR SINE MIR 68 197 -79 1 1599 277 250 135 0 chr4 132974835 132974931 -22655189 + MIRm SINE MIR 36 151 -125 1 1599 227 206 151 0 chr4 132980366 132980439 -22649681 - LTR33 LTR ERVL 0 515 432 1 1599 315 324 51 41 chr4 132981006 132981202 -22648918 + B4 SINE B4 33 230 -62 1 1599 662 158 100 0 chr4 132981209 132981329 -22648791 + B1_Mur2 SINE Alu 1 132 -17 1 1599 497 187 8 137 chr4 132981381 132981475 -22648645 + RSINE1 SINE B4 13 93 -72 1 1599 5564 102 25 31 chr4 132981475 132982316 -22647804 - Lx4A LINE L1 0 7058 6223 1 1599 497 187 8 137 chr4 132982316 132982345 -22647775 + RSINE1 SINE B4 94 120 -45 1 1599 219 325 26 0 chr4 132982358 132982435 -22647685 + B4A SINE B4 68 146 -146 1 1599 891 146 263 0 chr4 132982536 132982707 -22647413 + B3 SINE B2 1 216 0 1 1599 22 0 0 0 chr4 132982709 132982731 -22647389 + AT_rich Low_complexity Low_complexity 1 22 0 1 1599 618 170 0 0 chr4 132982944 132983050 -22647070 + B2_Mm2 SINE B2 2 107 -88 1 1599 266 118 118 0 chr4 132983077 132983128 -22646992 - B2_Mm2 SINE B2 -138 57 1 1 1599 282 255 37 25 chr4 132983163 132983253 -22646867 + B3A SINE B2 4 94 -122 1 1599 261 0 0 0 chr4 132983324 132983353 -22646767 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1599 344 339 113 19 chr4 132983355 132983611 -22646509 - ERVL-E-int LTR ERVL -2134 3623 3344 1 1599 369 349 14 48 chr4 132983838 132984046 -22646074 - ERVL-E-int LTR ERVL -2725 2942 2742 1 1599 591 146 42 0 chr4 132984089 132984185 -22645935 - RSINE1 SINE B4 -10 155 56 1 1599 2718 231 56 146 chr4 132984258 132984453 -22645667 + RMER19B LTR ERVK 1 146 -465 1 1599 4105 82 27 0 chr4 132984453 132985002 -22645118 - RMER2 LTR ERV1 0 567 4 1 1599 2718 182 131 125 chr4 132985002 132985792 -22644328 + RMER19B LTR ERVK 104 902 0 1 1599 2457 134 26 16 chr4 132985945 132986332 -22643788 - ORR1B1 LTR MaLR -2 392 2 1 1599 473 297 58 47 chr4 132986367 132986385 -22643735 - B2_Mm1a SINE B2 0 193 179 1 1599 258 32 0 0 chr4 132986385 132986416 -22643704 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1599 833 215 16 15 chr4 132986416 132986588 -22643532 - B3A SINE B2 -15 178 1 1 1599 885 179 7 0 chr4 132986607 132986747 -22643373 + B1_Mur3 SINE Alu 1 141 -8 1 1599 1179 104 0 0 chr4 132986748 132986921 -22643199 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 1 1599 623 179 5 38 chr4 132986931 132987117 -22643003 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1599 466 214 5 33 chr4 132987156 132987340 -22642780 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1599 433 310 40 17 chr4 132987349 132987524 -22642596 - B3A SINE B2 -13 203 34 1 1599 840 178 7 20 chr4 132988079 132988228 -22641892 - B1_Mur3 SINE Alu -1 148 2 1 1599 449 334 108 32 chr4 132988679 132989028 -22641092 - MTEa LTR MaLR 0 379 3 1 1599 258 204 37 0 chr4 132989029 132989083 -22641037 + B4A SINE B4 2 57 -235 1 1599 1209 48 0 13 chr4 132989217 132989366 -22640754 + B1_Mus1 SINE Alu 2 148 0 1 1599 876 135 28 0 chr4 132989454 132989595 -22640525 - B1_Mur4 SINE Alu 0 150 6 1 1599 287 275 12 12 chr4 132989609 132989690 -22640430 - PB1D10 SINE Alu -34 83 3 1 1599 406 213 106 44 chr4 132989725 132989838 -22640282 + PB1 SINE Alu 1 120 -7 1 1599 359 308 0 0 chr4 132989897 132990001 -22640119 - ID_B1 SINE B4 -7 217 114 1 1599 326 349 39 25 chr4 132990053 132990198 -22639922 + L1ME3B LINE L1 5555 5702 -538 1 1599 728 159 79 0 chr4 132990198 132990324 -22639796 + B1_Mur2 SINE Alu 1 136 -13 1 1599 648 0 0 0 chr4 132990326 132990398 -22639722 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1599 326 349 39 25 chr4 132990398 132990452 -22639668 + L1ME3B LINE L1 5703 5760 -480 1 1599 289 286 45 0 chr4 132990460 132990572 -22639548 + RSINE1 SINE B4 13 129 -36 1 1599 560 221 144 54 chr4 132990665 132990832 -22639288 - B3A SINE B2 -16 182 1 1 1599 428 0 0 19 chr4 132990842 132990895 -22639225 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1 1599 1188 57 0 0 chr4 132990897 132991038 -22639082 - B1_Mus1 SINE Alu -6 142 2 1 1599 227 287 112 69 chr4 132991231 132991268 -22638852 - B4A SINE B4 -170 122 85 1 1599 195 42 0 0 chr4 132991268 132991292 -22638828 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1 1599 233 287 112 69 chr4 132991292 132991370 -22638750 - B4 SINE B4 -206 86 2 1 1599 294 285 114 81 chr4 132991461 132991759 -22638361 + L1ME3B LINE L1 5918 6225 -15 1 1599 1467 197 62 47 chr4 132991812 132992153 -22637967 - ORR1D2 LTR MaLR 0 370 25 1 1599 584 294 0 0 chr4 132992281 132992424 -22637696 - B1F SINE Alu 0 149 7 1 1599 1573 104 87 10 chr4 132992436 132992745 -22637375 + MTB_Mm LTR MaLR 1 407 0 1 1599 1256 101 5 43 chr4 132992753 132992940 -22637180 + B2_Mm2 SINE B2 2 181 -14 1 1599 363 257 19 19 chr4 132992976 132993079 -22637041 + PB1D10 SINE Alu 13 115 -2 1 1599 620 301 72 47 chr4 132993065 132993344 -22636776 + MER21B LTR ERV1 458 743 -120 1 1599 538 306 41 10 chr4 132993391 132993586 -22636534 + B3 SINE B2 3 203 -13 1 1599 312 200 0 0 chr4 132993586 132993651 -22636469 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1599 1305 114 0 0 chr4 132993651 132993827 -22636293 - B2_Mm2 SINE B2 -18 177 2 1 1599 242 276 0 148 chr4 132993855 132993874 -22636246 + MT2B LTR ERVL 151 247 -353 1 1599 472 232 0 0 chr4 132993874 132993969 -22636151 + B1_Mur4 SINE Alu 1 95 -55 1 1599 813 230 9 70 chr4 132993972 132994201 -22635919 + RLTR18B LTR ERVK 4 218 -398 1 1599 1138 251 68 65 chr4 132994218 132994656 -22635464 + RLTR18B LTR ERVK 141 500 -12 1 1599 275 164 0 32 chr4 132994682 132994745 -22635375 + B1F1 SINE Alu 89 149 0 1 1599 826 223 0 0 chr4 132994900 132995048 -22635072 - B1_Mur1 SINE Alu 0 149 2 1 1599 850 33 81 6 chr4 132995048 132995382 -22634738 + (TC)n Simple_repeat Simple_repeat 1 358 0 1 1599 214 179 26 0 chr4 132995382 132995421 -22634699 + CT-rich Low_complexity Low_complexity 2 41 0 1 1599 331 277 33 82 chr4 132995421 132995543 -22634577 - PB1D10 SINE Alu -1 116 1 1 1599 631 236 34 14 chr4 132995543 132995582 -22634538 - ID SINE ID -140 84 43 1 1599 449 324 167 20 chr4 132996644 132996696 -22633424 - MLT1J LTR MaLR -45 467 401 1 1599 635 195 8 17 chr4 132996696 132996816 -22633304 + PB1D9 SINE Alu 2 120 0 1 1599 449 324 167 20 chr4 132996816 132997068 -22633052 - MLT1J LTR MaLR -112 400 118 1 1599 529 150 37 12 chr4 132997077 132997326 -22632794 + (TG)n Simple_repeat Simple_repeat 1 255 0 1 1599 298 164 40 24 chr4 132997353 132997478 -22632642 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 1599 391 273 55 0 chr4 132997710 132997820 -22632300 + PB1D10 SINE Alu 1 116 -1 1 1599 1093 243 42 4 chr4 132997825 132998065 -22632055 + B4A SINE B4 1 249 -43 1 1599 384 22 0 0 chr4 132998396 132998441 -22631679 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1599 610 230 59 0 chr4 132998638 132998773 -22631347 + B1_Mur2 SINE Alu 6 148 -1 1 1599 258 257 57 0 chr4 132999742 132999812 -22630308 + MLT1L LTR MaLR 219 292 -318 1 1599 630 157 207 0 chr4 132999832 132999953 -22630167 - B1_Mus1 SINE Alu 0 148 3 1 1599 469 95 37 6 chr4 133000218 133000321 -22629799 + MTD LTR MaLR 307 416 -5 1 1599 940 135 204 17 chr4 133000321 133000502 -22629618 + B3 SINE B2 2 216 0 2 1599 306 216 10 137 chr4 133000690 133000752 -22629368 + ID_B1 SINE B4 124 173 -51 3 1599 1445 79 11 5 chr4 133000752 133000943 -22629177 + B2_Mm1t SINE B2 2 193 0 4 1599 306 216 10 137 chr4 133000943 133000982 -22629138 + ID_B1 SINE B4 174 212 -12 3 1599 1171 55 14 0 chr4 133001111 133001256 -22628864 - B1_Mus1 SINE Alu -1 147 1 5 1599 268 190 52 0 chr4 133001682 133001740 -22628380 - Ricksha_c DNA MuDR -1141 907 847 6 1599 236 103 0 0 chr4 133001751 133001790 -22628330 - MT2A LTR ERVL -310 223 185 7 1599 201 255 0 18 chr4 133001972 133002028 -22628092 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1599 1119 234 33 70 chr4 133002054 133002275 -22627845 - B4 SINE B4 -2 290 77 9 1599 2357 105 15 3 chr4 133002275 133002600 -22627520 + ORR1A4 LTR MaLR 1 329 0 1 1599 1119 234 33 70 chr4 133002600 133002677 -22627443 - B4 SINE B4 -216 76 3 9 1599 745 339 94 19 chr4 133003148 133003521 -22626599 + MLT1F LTR MaLR 70 470 -78 1 1599 325 246 0 14 chr4 133003938 133004008 -22626112 + ID4_ SINE ID 15 83 0 1 1599 479 224 51 0 chr4 133004230 133004328 -22625792 - B1F SINE Alu -13 136 34 1 1599 225 0 0 0 chr4 133004660 133004685 -22625435 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1599 829 256 106 20 chr4 133004701 133005066 -22625054 - RLTR28B LTR ERVL -60 421 1 1 1599 331 160 12 118 chr4 133005314 133005399 -22624721 + B1F SINE Alu 4 79 -70 1 1599 521 239 0 26 chr4 133006040 133006156 -22623964 + PB1D10 SINE Alu 5 117 0 1 1599 554 243 14 29 chr4 133006341 133006481 -22623639 + B3 SINE B2 12 149 -67 1 1599 299 25 25 0 chr4 133006494 133006534 -22623586 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1599 946 149 0 0 chr4 133006566 133006700 -22623420 + B1_Mus1 SINE Alu 2 135 -13 2 1599 621 245 7 21 chr4 133006913 133007055 -22623065 + ID_B1 SINE B4 85 224 0 2 1599 827 73 195 0 chr4 133007060 133007183 -22622937 + B1_Mus2 SINE Alu 1 147 0 2 1599 180 111 0 0 chr4 133007183 133007210 -22622910 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 2 1599 278 254 14 0 chr4 133007274 133007345 -22622775 - PB1D10 SINE Alu 0 117 46 2 1599 305 225 14 14 chr4 133007778 133007850 -22622270 - ID2 SINE ID 0 83 12 2 1599 230 175 0 0 chr4 133007871 133007911 -22622209 - MIRb SINE MIR -13 255 216 2 1599 435 214 28 37 chr4 133007985 133008092 -22622028 + B4A SINE B4 186 291 -1 2 1599 1172 56 0 0 chr4 133008114 133008257 -22621863 - B1_Mus2 SINE Alu 0 147 5 2 1599 450 95 0 0 chr4 133008285 133008348 -22621772 - B1_Mus2 SINE Alu -82 65 3 2 1599 1138 203 184 16 chr4 133008349 133008659 -22621461 - ORR1D2 LTR MaLR -4 366 5 3 1599 522 70 0 0 chr4 133008659 133008730 -22621390 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1599 449 299 109 76 chr4 133008778 133009053 -22621067 + B4 SINE B4 9 292 0 3 1599 738 161 131 0 chr4 133009083 133009213 -22620907 - B1_Mus2 SINE Alu 0 147 1 3 1599 222 116 0 0 chr4 133009242 133009285 -22620835 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1599 1141 198 9 19 chr4 133009287 133009498 -22620622 - B3 SINE B2 -5 211 3 3 1599 280 244 279 16 chr4 133009511 133009640 -22620480 - B3 SINE B2 -27 189 27 3 1599 744 122 195 0 chr4 133009669 133009792 -22620328 - B1_Mur3 SINE Alu -2 147 1 3 1599 553 254 0 0 chr4 133009973 133010095 -22620025 - RSINE1 SINE B4 -21 144 23 3 1599 666 175 13 13 chr4 133010255 133010312 -22619808 + G-rich Low_complexity Low_complexity 3 60 0 3 1599 1185 101 0 0 chr4 133010312 133010491 -22619629 + (GAA)n Simple_repeat Simple_repeat 1 179 0 4 1599 666 175 13 13 chr4 133010491 133010589 -22619531 + G-rich Low_complexity Low_complexity 61 157 0 4 1599 777 185 15 0 chr4 133010657 133010792 -22619328 + B1_Mur2 SINE Alu 12 148 -1 4 1599 235 360 36 9 chr4 133010794 133010906 -22619214 - L2a LINE L2 -283 3143 3029 4 1599 1158 232 45 35 chr4 133010981 133011294 -22618826 - MamRep4096 DNA hAT? -110 316 1 4 1599 180 77 0 0 chr4 133011446 133011472 -22618648 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1599 207 259 37 0 chr4 133011534 133011588 -22618532 - MIRc SINE MIR -103 165 110 4 1599 261 83 0 0 chr4 133011844 133011880 -22618240 + (TTA)n Simple_repeat Simple_repeat 2 37 0 4 1599 249 264 198 52 chr4 133012023 133012215 -22617905 - ID_B1 SINE B4 -1 223 4 4 1599 228 311 32 45 chr4 133013000 133013155 -22616965 + G-rich Low_complexity Low_complexity 2 154 0 4 1599 324 0 0 0 chr4 133013406 133013442 -22616678 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1599 375 290 132 20 chr4 133013487 133013684 -22616436 + B4 SINE B4 2 220 -72 5 1599 736 207 7 0 chr4 133013780 133013915 -22616205 - B1_Mur1 SINE Alu -5 144 9 5 1599 280 244 24 0 chr4 133014248 133014330 -22615790 - LTR16A LTR ERVL -159 292 209 5 1599 242 308 31 0 chr4 133014391 133014456 -22615664 + RMER30 DNA MER1_type 133 199 -3 5 1599 534 225 47 0 chr4 133015321 133015450 -22614670 + MIR SINE MIR 20 154 -108 5 1599 383 267 0 11 chr4 133015493 133015584 -22614536 - ID_B1 SINE B4 -27 197 108 5 1599 1177 57 0 6 chr4 133015643 133015802 -22614318 + B2_Mm2 SINE B2 1 158 -37 5 1599 243 0 0 0 chr4 133015803 133015830 -22614290 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1599 250 274 36 73 chr4 133015842 133015952 -22614168 + MIR SINE MIR 147 252 -10 5 1599 603 232 21 28 chr4 133015961 133016103 -22614017 + RSINE1 SINE B4 2 142 -23 5 1599 207 0 0 0 chr4 133016103 133016126 -22613994 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1599 342 0 0 0 chr4 133016126 133016163 -22613957 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1599 670 185 0 40 chr4 133016177 133016301 -22613819 + B1_Mus1 SINE Alu 1 119 -29 6 1599 228 260 28 111 chr4 133016318 133016426 -22613694 + MT2B LTR ERVL 152 250 -351 6 1599 559 180 27 9 chr4 133016335 133016447 -22613673 + PB1D9 SINE Alu 7 120 0 6 1599 470 226 9 36 chr4 133016698 133016808 -22613312 - PB1D7 SINE Alu -4 116 10 6 1599 272 308 0 11 chr4 133016728 133016820 -22613300 - B4A SINE B4 -119 173 83 6 1599 2378 114 37 104 chr4 133017450 133017465 -22612655 + RLTR23 LTR ERV1 1 15 -415 6 1599 2168 123 25 74 chr4 133017465 133017896 -22612224 + RMER17C LTR ERVK 1 410 0 6 1599 2378 114 37 104 chr4 133017896 133018341 -22611779 + RLTR23 LTR ERV1 16 430 0 6 1599 458 233 89 107 chr4 133018381 133018549 -22611571 + ID_B1 SINE B4 26 190 -34 6 1599 266 192 175 25 chr4 133018987 133019067 -22611053 + PB1D7 SINE Alu 27 118 -2 7 1599 2332 72 3 0 chr4 133019662 133019980 -22610140 - ORR1A2 LTR MaLR -8 319 1 7 1599 221 310 42 0 chr4 133020941 133021012 -22609108 + B4A SINE B4 78 151 -141 7 1599 399 262 9 37 chr4 133020958 133021065 -22609055 + PB1D10 SINE Alu 12 115 -2 7 1599 2437 166 135 35 chr4 133021086 133021766 -22608354 + RMER19B LTR ERVK 7 764 -138 7 1599 1554 32 49 0 chr4 133021766 133021919 -22608201 + B2_Mm2 SINE B2 1 153 -42 7 1599 531 0 0 0 chr4 133021919 133021978 -22608142 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1599 1554 32 49 0 chr4 133021978 133022009 -22608111 + B2_Mm2 SINE B2 154 192 -3 7 1599 2437 173 56 47 chr4 133022009 133022139 -22607981 + RMER19B LTR ERVK 765 886 -16 7 1599 1229 41 0 0 chr4 133022140 133022285 -22607835 + B1_Mus2 SINE Alu 1 145 -2 7 1599 288 295 12 0 chr4 133022312 133022407 -22607713 + ID4 SINE ID 2 97 -55 7 1599 313 270 103 45 chr4 133022991 133023146 -22606974 + RSINE1 SINE B4 2 165 0 7 1599 952 238 39 5 chr4 133023174 133023381 -22606739 - B3 SINE B2 -2 214 1 8 1599 243 0 0 0 chr4 133023392 133023419 -22606701 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1599 1257 48 0 0 chr4 133023424 133023571 -22606549 - B1_Mus2 SINE Alu 0 147 1 8 1599 678 251 52 52 chr4 133023606 133023799 -22606321 - B3A SINE B2 -5 193 1 8 1599 23 0 0 0 chr4 133024372 133024395 -22605725 + GC_rich Low_complexity Low_complexity 1 23 0 8 1599 278 170 22 33 chr4 133024615 133024706 -22605414 + CT-rich Low_complexity Low_complexity 1 90 0 8 1599 494 214 200 25 chr4 133024918 133025038 -22605082 + B1_Mus2 SINE Alu 1 141 -6 8 1599 474 204 261 32 chr4 133025802 133025959 -22604161 + ID_B1 SINE B4 1 193 -31 8 1599 183 129 0 0 chr4 133025970 133026001 -22604119 + (GAA)n Simple_repeat Simple_repeat 2 32 0 8 1599 876 231 75 0 chr4 133026036 133026235 -22603885 + B3 SINE B2 3 216 0 8 1599 33 0 0 0 chr4 133026248 133026281 -22603839 + AT_rich Low_complexity Low_complexity 1 33 0 9 1599 361 314 24 16 chr4 133026281 133026404 -22603716 + RSINE1 SINE B4 4 127 -38 9 1599 410 264 138 100 chr4 133026475 133026530 -22603590 + L1MA6 LINE L1 5593 5650 -650 9 1599 1193 168 243 18 chr4 133026530 133026717 -22603403 - RMER17C LTR ERVK -2 408 218 9 1599 585 52 0 0 chr4 133026717 133026794 -22603326 + (GA)n Simple_repeat Simple_repeat 2 78 0 9 1599 1193 168 243 18 chr4 133026794 133026939 -22603181 - RMER17C LTR ERVK -193 217 1 9 1599 410 264 138 100 chr4 133026939 133027154 -22602966 + L1MA6 LINE L1 5651 5899 -401 9 1599 794 179 117 0 chr4 133027154 133027316 -22602804 + B3A SINE B2 2 182 -16 9 1599 410 264 138 100 chr4 133027316 133027352 -22602768 + L1MA6 LINE L1 5900 5926 -374 9 1599 952 138 34 20 chr4 133027352 133027500 -22602620 + B1_Mur4 SINE Alu 1 150 0 9 1599 410 264 138 100 chr4 133027500 133027700 -22602420 + L1MA6 LINE L1 5927 6119 -181 9 1599 185 59 0 56 chr4 133027771 133027807 -22602313 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 9 1599 983 155 0 0 chr4 133027807 133027955 -22602165 - B1_Mus1 SINE Alu 0 148 1 9 1599 386 260 85 0 chr4 133027957 133028134 -22601986 + L1MA6 LINE L1 6106 6297 -3 9 1599 300 295 58 74 chr4 133028136 133028257 -22601863 + ID_B1 SINE B4 78 196 -28 9 1599 1428 73 17 0 chr4 133028444 133028622 -22601498 + B2_Mm2 SINE B2 1 181 -14 1 1599 584 111 55 18 chr4 133028622 133028732 -22601388 + Lx5 LINE L1 6933 7046 -4 1 1599 350 274 86 26 chr4 133028819 133028935 -22601185 + RSINE1 SINE B4 7 129 -36 1 1599 747 271 101 53 chr4 133028965 133029327 -22600793 + Lx3B LINE L1 5424 5787 -391 1 1599 931 140 0 0 chr4 133029444 133029580 -22600540 + B1_Mus1 SINE Alu 1 136 -12 1 1599 243 0 0 0 chr4 133029581 133029608 -22600512 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 1 1599 570 129 167 10 chr4 133029633 133029735 -22600385 + PB1D9 SINE Alu 1 118 -2 1 1599 639 0 0 0 chr4 133029735 133029806 -22600314 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1599 448 180 0 33 chr4 133030279 133030371 -22599749 - B1_Mur1 SINE Alu -1 148 60 1 1599 389 125 22 22 chr4 133030388 133030478 -22599642 + GA-rich Low_complexity Low_complexity 1 90 0 1 1599 276 311 0 0 chr4 133030478 133030539 -22599581 - B1_Mur3 SINE Alu -86 63 3 1 1599 651 296 76 76 chr4 133031071 133031451 -22598669 - RLTR12B LTR ERVK -31 497 118 1 1599 1311 98 10 15 chr4 133031539 133031735 -22598385 + B2_Mm2 SINE B2 1 195 0 1 1599 183 333 81 0 chr4 133031756 133031855 -22598265 - L2 LINE L2 -1358 2061 1955 1 1599 460 299 107 30 chr4 133032084 133032146 -22597974 - CYRA11_Mm Unknown Y-chromosome -203 414 244 1 1599 965 124 6 6 chr4 133032146 133032308 -22597812 + URR1B DNA MER1_type 64 225 0 1 1599 460 299 107 30 chr4 133032308 133032346 -22597774 - CYRA11_Mm Unknown Y-chromosome -203 243 133 1 1599 379 296 146 65 chr4 133032531 133032929 -22597191 - L2 LINE L2 -2188 1231 802 1 1599 202 294 0 0 chr4 133033312 133033363 -22596757 - MIR SINE MIR -59 149 99 1 1599 369 0 0 0 chr4 133033599 133033640 -22596480 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1599 198 378 81 20 chr4 133034070 133034316 -22595804 + L2c LINE L2 3127 3387 0 1 1599 377 310 57 11 chr4 133034409 133034608 -22595512 + MIRb SINE MIR 39 254 -14 1 1599 271 239 58 29 chr4 133034697 133034766 -22595354 - ID4_ SINE ID -4 79 9 1 1599 239 359 0 0 chr4 133034873 133034951 -22595169 - ID4_ SINE ID -3 80 3 1 1599 248 163 82 0 chr4 133034959 133035008 -22595112 - PB1D9 SINE Alu -2 118 66 1 1599 433 221 19 28 chr4 133034967 133035074 -22595046 - ID_B1 SINE B4 -14 210 105 1 1599 22 0 0 0 chr4 133036301 133036323 -22593797 + GC_rich Low_complexity Low_complexity 1 22 0 1 1599 483 130 79 53 chr4 133037709 133037823 -22592297 - PB1 SINE Alu 0 127 11 1 1599 231 160 12 118 chr4 133037752 133037837 -22592283 - ID_B1 SINE B4 -69 155 80 1 1600 238 291 24 48 chr4 133038508 133038591 -22591529 + MIRc SINE MIR 40 120 -88 1 1600 470 252 102 0 chr4 133039203 133039330 -22590790 + ID_B1 SINE B4 80 219 -5 1 1600 1019 81 39 12 chr4 133039340 133039679 -22590441 + (TAGA)n Simple_repeat Simple_repeat 1 348 0 1 1600 401 226 9 45 chr4 133039699 133039810 -22590310 - PB1D10 SINE Alu -10 107 1 1 1600 229 321 0 12 chr4 133039968 133040050 -22590070 + MIRc SINE MIR 87 167 -101 1 1600 322 260 39 0 chr4 133040078 133040155 -22589965 - ID4_ SINE ID -3 80 1 1 1600 882 221 85 10 chr4 133040833 133041034 -22589086 + B3 SINE B2 1 216 0 1 1600 710 118 86 8 chr4 133041073 133041201 -22588919 + B1_Mur3 SINE Alu 12 149 0 1 1600 942 47 0 8 chr4 133041203 133041331 -22588789 + B1_Mus2 SINE Alu 21 147 0 1 1600 490 253 75 46 chr4 133041603 133041777 -22588343 + MIR SINE MIR 36 214 -48 1 1600 287 298 31 41 chr4 133044923 133045021 -22585099 - L2a LINE L2 -276 3150 3054 1 1600 196 278 75 32 chr4 133045239 133045332 -22584788 - MIRb SINE MIR -61 207 111 1 1600 421 288 164 0 chr4 133045829 133046006 -22584114 + LTR33 LTR ERVL 18 223 -292 1 1600 180 0 0 0 chr4 133046079 133046099 -22584021 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1600 364 218 194 39 chr4 133046184 133046243 -22583877 - B1F SINE Alu 0 149 89 1 1600 1240 34 0 13 chr4 133046243 133046392 -22583728 - B1_Mus2 SINE Alu 0 147 1 1 1600 364 218 194 39 chr4 133046392 133046461 -22583659 - B1F SINE Alu -61 88 1 1 1600 895 71 0 0 chr4 133046504 133046630 -22583490 + B1_Mus1 SINE Alu 23 148 0 1 1600 396 0 0 0 chr4 133046856 133046900 -22583220 + (CAGT)n Simple_repeat Simple_repeat 2 45 0 1 1600 783 104 286 65 chr4 133048050 133048235 -22581885 - URR1A DNA MER1_type 0 226 1 1 1600 285 89 0 0 chr4 133048363 133048408 -22581712 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1 1600 863 128 41 28 chr4 133048410 133048555 -22581565 - B1_Mus1 SINE Alu -1 147 1 1 1600 1239 41 7 0 chr4 133048583 133048730 -22581390 - B1_Mus1 SINE Alu 0 148 1 1 1600 659 238 86 32 chr4 133048793 133048980 -22581140 + B3A SINE B2 2 198 0 1 1600 232 0 105 0 chr4 133048984 133049022 -22581098 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 1600 28 0 0 0 chr4 133049058 133049086 -22581034 + AT_rich Low_complexity Low_complexity 1 28 0 1 1600 365 167 13 0 chr4 133049088 133049166 -22580954 + CT-rich Low_complexity Low_complexity 3 81 0 1 1600 450 53 0 0 chr4 133049157 133049214 -22580906 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1600 218 189 0 0 chr4 133049219 133049256 -22580864 + B1_Mur4 SINE Alu 2 38 -112 1 1600 180 333 39 79 chr4 133049606 133049733 -22580387 + MIRb SINE MIR 128 249 -19 1 1600 219 125 0 0 chr4 133049829 133049869 -22580251 + (C)n Simple_repeat Simple_repeat 1 40 0 1 1600 240 59 0 0 chr4 133050245 133050279 -22579841 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1600 725 141 97 62 chr4 133050282 133050426 -22579694 - B1_Mur4 SINE Alu -1 149 1 1 1600 234 0 0 0 chr4 133050756 133050782 -22579338 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1600 477 264 85 0 chr4 133050865 133050994 -22579126 + ID_B1 SINE B4 1 140 -84 1 1600 493 274 42 54 chr4 133051008 133051174 -22578946 + RSINE1 SINE B4 2 165 0 1 1600 21 0 0 0 chr4 133051267 133051288 -22578832 + AT_rich Low_complexity Low_complexity 1 21 0 1 1600 234 0 0 0 chr4 133051560 133051586 -22578534 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1600 234 91 0 0 chr4 133052511 133052544 -22577576 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1600 21 36 0 0 chr4 133053715 133053743 -22576377 + GC_rich Low_complexity Low_complexity 1 28 0 1 1600 32 57 0 0 chr4 133054088 133054141 -22575979 + GC_rich Low_complexity Low_complexity 1 53 0 1 1600 229 305 0 31 chr4 133054210 133054308 -22575812 + G-rich Low_complexity Low_complexity 4 98 0 1 1600 280 64 0 60 chr4 133055770 133055820 -22574300 + B1_Mus2 SINE Alu 101 147 0 1 1600 323 252 199 58 chr4 133055993 133056149 -22573971 + ID_B1 SINE B4 39 216 -8 1 1600 546 281 14 14 chr4 133056264 133056412 -22573708 + B1F SINE Alu 1 148 -1 1 1600 292 294 71 13 chr4 133056415 133056570 -22573550 + RSINE1 SINE B4 1 164 -1 1 1600 545 144 42 5 chr4 133056580 133056797 -22573323 + (CA)n Simple_repeat Simple_repeat 1 225 0 1 1600 730 241 0 0 chr4 133056832 133056973 -22573147 - B1_Mur1 SINE Alu -7 142 2 1 1600 405 0 0 0 chr4 133057165 133057210 -22572910 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1600 182 200 0 0 chr4 133057498 133057538 -22572582 - L2b LINE L2 -234 3141 3102 1 1600 417 307 31 0 chr4 133057743 133057863 -22572257 + ID_B1 SINE B4 1 124 -100 1 1600 569 208 31 31 chr4 133057863 133057992 -22572128 - B1_Mur1 SINE Alu -19 130 2 1 1600 414 88 0 0 chr4 133058040 133058108 -22572012 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1600 638 245 82 116 chr4 133058159 133058347 -22571773 + RLTR9A LTR ERVK 106 284 -84 1 1600 942 76 30 0 chr4 133058347 133058478 -22571642 + B1_Mus2 SINE Alu 2 136 -11 1 1600 638 245 82 116 chr4 133058478 133058557 -22571563 + RLTR9A LTR ERVK 285 364 -4 1 1600 477 71 0 0 chr4 133058557 133058627 -22571493 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1600 438 274 8 33 chr4 133058647 133058768 -22571352 - RSINE1 SINE B4 -38 127 10 1 1600 396 284 126 0 chr4 133058776 133058903 -22571217 - ID_B1 SINE B4 0 224 82 1 1600 225 0 0 0 chr4 133058912 133058937 -22571183 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1600 752 228 28 50 chr4 133059031 133059211 -22570909 + ID_B1 SINE B4 3 178 -46 1 1600 434 196 48 29 chr4 133059121 133059226 -22570894 + PB1D7 SINE Alu 6 112 -8 1 1600 522 191 0 0 chr4 133059917 133060053 -22570067 + CT-rich Low_complexity Low_complexity 1 136 0 1 1600 300 327 51 13 chr4 133060315 133060473 -22569647 - MamRep564 Unknown Unknown -117 240 77 1 1600 611 168 97 60 chr4 133060566 133060743 -22569377 - Lx3B LINE L1 -5 7004 6805 1 1600 303 292 0 33 chr4 133060745 133060837 -22569283 - BC1_Mm scRNA scRNA -56 96 8 1 1600 504 0 0 0 chr4 133061259 133061315 -22568805 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 1 1600 1216 125 218 26 chr4 133061422 133061693 -22568427 - Lx4B LINE L1 -4 7054 6732 1 1600 190 367 26 44 chr4 133061694 133061808 -22568312 - L2b LINE L2 -238 3137 3026 1 1600 425 299 30 54 chr4 133062465 133062631 -22567489 - RLTR14 LTR ERV1 0 382 221 1 1600 233 247 75 38 chr4 133062907 133062987 -22567133 + B1F2 SINE Alu 35 117 -32 1 1600 342 247 84 58 chr4 133063086 133063241 -22566879 + RSINE1 SINE B4 3 161 -4 1 1600 212 179 0 0 chr4 133063250 133063289 -22566831 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1600 651 132 147 0 chr4 133063292 133063421 -22566699 - B1_Mus1 SINE Alu 0 148 1 1 1600 320 288 83 46 chr4 133063476 133063585 -22566535 + B1F SINE Alu 10 122 -27 1 1600 486 261 44 19 chr4 133063663 133063823 -22566297 + RSINE1 SINE B4 1 164 -1 1 1600 26 0 0 0 chr4 133063827 133063853 -22566267 + AT_rich Low_complexity Low_complexity 1 26 0 2 1600 256 316 43 9 chr4 133063858 133063973 -22566147 - L2b LINE L2 -1056 2363 2245 1 1600 315 244 12 42 chr4 133064050 133064157 -22565963 + B1F SINE Alu 5 142 -7 2 1600 279 381 47 7 chr4 133064179 133064327 -22565793 + Lx8 LINE L1 7037 7190 -283 2 1600 280 336 9 27 chr4 133064337 133064447 -22565673 + RMER15 LTR ERVL 371 478 -97 2 1600 273 119 0 0 chr4 133065426 133065468 -22564652 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1600 600 231 7 29 chr4 133065504 133065642 -22564478 - B1_Mur2 SINE Alu 0 149 15 2 1600 21 36 0 0 chr4 133065642 133065670 -22564450 + AT_rich Low_complexity Low_complexity 1 28 0 2 1600 1340 56 33 0 chr4 133065698 133065878 -22564242 - B2_Mm1t SINE B2 -7 186 1 2 1600 248 371 31 0 chr4 133065908 133066005 -22564115 + B4A SINE B4 1 100 -192 2 1600 1141 72 20 96 chr4 133066021 133066220 -22563900 + B2_Mm2 SINE B2 1 184 -11 2 1600 604 284 6 12 chr4 133066250 133066414 -22563706 + ID_B1 SINE B4 60 222 -2 2 1600 442 239 103 36 chr4 133066417 133066582 -22563538 - ORR1D2 LTR MaLR 0 370 195 2 1600 754 196 0 0 chr4 133066602 133066740 -22563380 - B1F2 SINE Alu -11 138 1 2 1600 974 282 31 45 chr4 133066770 133067190 -22562930 + BGLII_B LTR ERVK 1 414 -27 2 1600 363 331 169 24 chr4 133067210 133067457 -22562663 - Tigger7 DNA MER2_type -2108 383 101 2 1600 607 258 76 101 chr4 133067457 133067616 -22562504 + B3A SINE B2 3 157 -38 2 1600 207 100 0 0 chr4 133067616 133067646 -22562474 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1600 379 258 76 101 chr4 133067646 133067670 -22562450 + B2_Mm2 SINE B2 158 183 -12 2 1600 1120 62 0 7 chr4 133067670 133067816 -22562304 + B1_Mus2 SINE Alu 1 145 -2 2 1600 379 258 76 101 chr4 133067816 133067829 -22562291 + B2_Mm2 SINE B2 184 195 0 2 1600 720 176 144 41 chr4 133067844 133068039 -22562081 - B3 SINE B2 0 216 2 2 1600 950 246 5 23 chr4 133068048 133068268 -22561852 - B3 SINE B2 0 216 1 2 1600 23 33 0 0 chr4 133068271 133068301 -22561819 + AT_rich Low_complexity Low_complexity 1 30 0 2 1600 437 265 49 42 chr4 133068370 133068512 -22561608 - B1_Mur1 SINE Alu 0 149 7 2 1600 274 264 125 0 chr4 133068517 133068589 -22561531 - Tigger7 DNA MER2_type -2392 99 19 2 1600 1505 37 0 25 chr4 133068589 133068785 -22561335 + B2_Mm1a SINE B2 1 191 -2 2 1600 273 322 66 25 chr4 133068849 133068970 -22561150 - MIR SINE MIR -119 143 18 2 1600 259 304 0 0 chr4 133069682 133069751 -22560369 + BC1_Mm scRNA scRNA 24 92 -60 2 1600 620 226 124 0 chr4 133069781 133069967 -22560153 + ID_B1 SINE B4 4 212 -12 2 1600 432 0 0 0 chr4 133069969 133070017 -22560103 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1600 447 127 47 0 chr4 133070202 133070306 -22559814 + B1_Mur3 SINE Alu 6 149 0 2 1600 1179 85 57 0 chr4 133070314 133070490 -22559630 + B2_Mm2 SINE B2 10 195 0 2 1600 324 271 39 78 chr4 133070538 133070666 -22559454 - B1F SINE Alu 0 149 27 2 1600 940 89 0 43 chr4 133070690 133070878 -22559242 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1600 252 265 29 14 chr4 133070945 133071014 -22559106 - B4A SINE B4 -222 70 1 2 1600 706 283 98 82 chr4 133071014 133071218 -22558902 - L1MB4 LINE L1 -42 6138 5924 2 1600 315 234 13 13 chr4 133071218 133071296 -22558824 - ID4_ SINE ID -1 82 5 2 1600 706 283 98 82 chr4 133071296 133071530 -22558590 - L1MB4 LINE L1 -257 5923 5693 2 1600 1062 224 174 51 chr4 133071536 133071870 -22558250 + MTE2b LTR MaLR 1 375 -4 2 1600 538 253 8 1 chr4 133071882 133072004 -22558116 - PB1D10 SINE Alu -11 138 11 2 1600 573 244 0 0 chr4 133072044 133072159 -22557961 + PB1D9 SINE Alu 3 117 -3 2 1600 770 198 49 6 chr4 133072164 133072327 -22557793 + B3A SINE B2 3 172 -26 2 1600 354 222 212 8 chr4 133072405 133072523 -22557597 - RSINE1 SINE B4 -22 143 2 2 1600 234 0 0 0 chr4 133072871 133072897 -22557223 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1600 436 183 12 0 chr4 133072913 133072995 -22557125 - ID_B1 SINE B4 -55 169 87 2 1600 832 141 0 0 chr4 133073037 133073165 -22556955 - B1_Mur4 SINE Alu -7 143 16 2 1600 300 111 0 0 chr4 133073482 133073527 -22556593 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 1600 1096 65 0 0 chr4 133073530 133073668 -22556452 - B1_Mus2 SINE Alu -5 142 5 2 1600 186 71 0 0 chr4 133073676 133073704 -22556416 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1600 764 179 15 0 chr4 133073704 133073838 -22556282 - B1_Mur3 SINE Alu -13 136 1 2 1600 603 197 47 0 chr4 133073940 133074067 -22556053 + ID_B1 SINE B4 86 218 -6 2 1600 919 204 0 55 chr4 133074186 133074404 -22555716 + B3 SINE B2 1 206 -10 2 1600 292 248 85 31 chr4 133074486 133074615 -22555505 - L2c LINE L2 0 3387 3252 2 1600 25 31 0 0 chr4 133075030 133075062 -22555058 + GC_rich Low_complexity Low_complexity 1 32 0 2 1600 239 232 14 14 chr4 133075147 133075217 -22554903 + (CCGGG)n Simple_repeat Simple_repeat 1 70 0 2 1600 195 42 0 0 chr4 133075525 133075549 -22554571 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 2 1600 28 48 0 0 chr4 133075806 133075848 -22554272 + AT_rich Low_complexity Low_complexity 1 42 0 2 1600 483 256 88 0 chr4 133075849 133075974 -22554146 - ID_B1 SINE B4 -1 223 88 2 1600 444 213 9 44 chr4 133076205 133076318 -22553802 - PB1D7 SINE Alu -2 118 10 2 1600 215 278 96 14 chr4 133076411 133076484 -22553636 + MIRb SINE MIR 117 195 -73 2 1600 198 315 90 0 chr4 133076491 133076580 -22553540 + MIRm SINE MIR 164 260 -16 2 1600 501 197 231 43 chr4 133076861 133077047 -22553073 + ID_B1 SINE B4 1 221 -3 2 1600 229 254 264 0 chr4 133077047 133077157 -22552963 + MIR SINE MIR 83 221 -41 2 1600 229 227 207 9 chr4 133077170 133077281 -22552839 + L2b LINE L2 3243 3375 0 2 1600 363 333 9 0 chr4 133077356 133077470 -22552650 - PB1D10 SINE Alu -2 115 1 2 1600 681 205 16 0 chr4 133078147 133078269 -22551851 + B1_Mur2 SINE Alu 17 140 -9 2 1600 183 42 0 0 chr4 133078289 133078313 -22551807 + (CATA)n Simple_repeat Simple_repeat 3 26 0 2 1600 483 98 0 64 chr4 133078323 133078427 -22551693 + B1_Mus2 SINE Alu 27 147 0 2 1600 22 35 0 0 chr4 133078451 133078480 -22551640 + AT_rich Low_complexity Low_complexity 1 29 0 2 1600 233 355 0 0 chr4 133078640 133078716 -22551404 - L1MC4 LINE L1 -633 7409 7334 2 1600 852 135 0 34 chr4 133078846 133078992 -22551128 - B1_Mus1 SINE Alu -2 146 6 2 1600 559 133 11 0 chr4 133079139 133079229 -22550891 + B3 SINE B2 2 92 -124 2 1600 285 297 203 0 chr4 133079382 133079500 -22550620 - B1_Mur2 SINE Alu -4 145 4 2 1600 306 0 0 0 chr4 133079521 133079555 -22550565 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 2 1600 291 262 142 28 chr4 133079555 133079656 -22550464 - ID_B1 SINE B4 -9 215 103 2 1600 353 251 122 80 chr4 133079853 133080142 -22549978 - B4 SINE B4 -18 274 3 2 1600 280 302 37 115 chr4 133080143 133080188 -22549932 + MT2B LTR ERVL 127 265 -336 2 1600 420 316 22 22 chr4 133080188 133080324 -22549796 + ID_B1 SINE B4 84 219 -5 2 1600 508 260 115 72 chr4 133080550 133080887 -22549233 - L1MB4 LINE L1 0 6183 5841 2 1600 552 126 115 10 chr4 133080887 133080991 -22549129 - PB1D9 SINE Alu -5 115 1 2 1600 475 260 94 117 chr4 133080991 133081123 -22548997 - L1MB4 LINE L1 -342 5841 5725 2 1600 1420 73 16 0 chr4 133081124 133081315 -22548805 - B2_Mm2 SINE B2 0 195 2 2 1600 1512 166 80 0 chr4 133081326 133081431 -22548689 - RMER1C Other Other 0 1342 1237 2 1600 504 0 0 0 chr4 133081431 133081487 -22548633 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1600 1512 166 80 0 chr4 133081487 133081670 -22548450 - RMER1C Other Other -106 1236 1032 2 1600 880 25 160 0 chr4 133081671 133081790 -22548330 + B1_Mus1 SINE Alu 2 139 -9 2 1600 925 212 24 19 chr4 133081829 133082040 -22548080 - B3 SINE B2 -4 212 1 2 1600 567 275 0 12 chr4 133082043 133082217 -22547903 - L1M4 LINE L1 -419 5755 5589 2 1600 1126 63 0 0 chr4 133082221 133082363 -22547757 - B1_Mus1 SINE Alu -6 142 1 2 1600 623 226 111 23 chr4 133082384 133082556 -22547564 - B3 SINE B2 -29 187 1 2 1600 701 123 9 0 chr4 133082586 133082692 -22547428 + B3 SINE B2 2 108 -108 2 1600 247 100 25 0 chr4 133082688 133082728 -22547392 + B3 SINE B2 68 108 -108 2 1600 247 100 25 0 chr4 133082724 133082764 -22547356 + B3 SINE B2 68 108 -108 2 1600 247 100 25 0 chr4 133082760 133082800 -22547320 + B3 SINE B2 68 108 -108 2 1600 728 199 20 7 chr4 133082796 133082943 -22547177 + B3 SINE B2 68 216 0 2 1600 241 182 136 0 chr4 133082991 133083057 -22547063 - B3A SINE B2 -38 160 86 2 1600 1327 99 0 10 chr4 133083075 133083268 -22546852 - B2_Mm2 SINE B2 -4 191 1 2 1600 1109 81 0 0 chr4 133083321 133083469 -22546651 - B1_Mus1 SINE Alu 0 148 1 2 1600 240 211 19 0 chr4 133083487 133083539 -22546581 - ID4_ SINE ID 0 83 31 2 1600 907 79 0 8 chr4 133085212 133085339 -22544781 + B1_Mus1 SINE Alu 2 127 -21 2 1600 1090 74 0 20 chr4 133085460 133085611 -22544509 - B1_Mus1 SINE Alu 0 148 1 2 1600 228 204 20 39 chr4 133087306 133087357 -22542763 + ID4 SINE ID 28 77 -6 2 1600 405 288 119 25 chr4 133087359 133087407 -22542713 + ID_B1 SINE B4 44 218 -6 2 1600 499 196 71 0 chr4 133087407 133087519 -22542601 + B1F1 SINE Alu 24 143 -6 2 1600 547 256 47 21 chr4 133087529 133087704 -22542416 + B3 SINE B2 9 181 -14 2 1600 366 264 56 40 chr4 133088110 133088236 -22541884 + RSINE1 SINE B4 8 135 -30 2 1600 186 133 0 0 chr4 133088245 133088275 -22541845 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1600 221 150 0 0 chr4 133090419 133090459 -22539661 + (TCC)n Simple_repeat Simple_repeat 3 42 0 3 1600 702 222 176 0 chr4 133090727 133090903 -22539217 - B3 SINE B2 -8 208 2 3 1600 225 94 0 0 chr4 133090954 133090986 -22539134 + (TTA)n Simple_repeat Simple_repeat 1 32 0 3 1600 468 0 0 0 chr4 133090999 133091051 -22539069 + (CCA)n Simple_repeat Simple_repeat 1 52 0 3 1600 189 0 0 0 chr4 133091051 133091072 -22539048 + (CAG)n Simple_repeat Simple_repeat 3 23 0 3 1600 382 172 135 22 chr4 133091075 133091164 -22538956 - PB1D9 SINE Alu -19 101 3 3 1600 289 243 92 18 chr4 133091181 133091290 -22538830 - PB1D10 SINE Alu 0 117 1 3 1600 31 26 0 0 chr4 133093927 133093965 -22536155 + AT_rich Low_complexity Low_complexity 1 38 0 3 1600 324 305 31 10 chr4 133093974 133094070 -22536050 + B1F2 SINE Alu 1 98 -51 3 1600 1100 124 11 28 chr4 133094736 133094918 -22535202 + B2_Mm1t SINE B2 1 179 -14 3 1600 366 107 316 18 chr4 133094965 133095079 -22535041 + B2_Mm2 SINE B2 47 194 -1 3 1600 471 349 61 97 chr4 133095103 133095496 -22534624 + MER21B LTR ERV1 26 404 -459 3 1600 342 0 0 0 chr4 133095530 133095568 -22534552 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1600 446 174 23 0 chr4 133095597 133095683 -22534437 - B1_Mur2 SINE Alu -28 121 34 3 1600 508 202 0 9 chr4 133095831 133095936 -22534184 + B1F2 SINE Alu 34 137 -12 3 1600 497 264 81 16 chr4 133095953 133096138 -22533982 - B3A SINE B2 -1 197 1 3 1600 280 248 4 4 chr4 133096227 133096316 -22533804 - L1M3 LINE L1 -587 5581 5493 3 1600 211 192 19 0 chr4 133096349 133096401 -22533719 - PB1 SINE Alu -34 93 41 3 1600 367 279 73 8 chr4 133096513 133096636 -22533484 - ID_B1 SINE B4 -9 215 85 3 1600 265 218 55 0 chr4 133096696 133096751 -22533369 - ID_B1 SINE B4 -91 133 76 3 1600 183 162 54 0 chr4 133096896 133096933 -22533187 + MIRc SINE MIR 110 148 -120 3 1600 260 194 45 75 chr4 133097408 133097507 -22532613 + RSINE1 SINE B4 10 96 -196 3 1600 619 181 53 0 chr4 133097509 133097642 -22532478 + B1_Mur4 SINE Alu 2 141 -9 3 1600 344 255 92 0 chr4 133097746 133097844 -22532276 + PB1D9 SINE Alu 8 114 -6 3 1600 432 268 39 0 chr4 133097850 133097977 -22532143 + ID_B1 SINE B4 93 224 0 3 1600 343 264 66 0 chr4 133098076 133098167 -22531953 + ID_B1 SINE B4 24 120 -104 3 1600 414 283 115 5 chr4 133098415 133098607 -22531513 + B3 SINE B2 3 215 -1 3 1600 273 196 315 9 chr4 133098671 133098779 -22531341 - B3 SINE B2 -68 148 8 3 1600 347 312 9 18 chr4 133098792 133098903 -22531217 - PB1D9 SINE Alu -8 112 3 3 1600 293 292 14 0 chr4 133098941 133099013 -22531107 + PB1D10 SINE Alu 32 104 -13 3 1600 919 65 0 0 chr4 133099062 133099186 -22530934 - B1_Mm SINE Alu 0 147 24 3 1600 476 227 45 135 chr4 133099235 133099334 -22530786 - MTE2a LTR MaLR -37 342 247 3 1600 1074 61 7 13 chr4 133099334 133099483 -22530637 + B1_Mus1 SINE Alu 1 148 0 3 1600 476 227 45 135 chr4 133099483 133099561 -22530559 - MTE2a LTR MaLR -133 246 181 3 1600 1575 198 128 5 chr4 133099876 133100251 -22529869 + MTC LTR MaLR 1 421 0 3 1600 557 273 0 0 chr4 133100474 133100595 -22529525 - B1F2 SINE Alu -18 131 11 3 1600 246 333 54 36 chr4 133100602 133100714 -22529406 + RSINE1 SINE B4 4 117 -48 3 1600 297 0 0 0 chr4 133100737 133100770 -22529350 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 1600 793 146 71 21 chr4 133100780 133100920 -22529200 - B1_Mus2 SINE Alu 0 147 1 3 1600 445 287 35 0 chr4 133101051 133101194 -22528926 + B1F2 SINE Alu 2 149 0 3 1600 197 283 0 0 chr4 133101199 133101245 -22528875 - MIRm SINE MIR -106 170 125 3 1600 1953 162 113 3 chr4 133102754 133103125 -22526995 + MTC LTR MaLR 1 412 -9 3 1600 1134 74 0 0 chr4 133103130 133103278 -22526842 + B1_Mus1 SINE Alu 1 148 0 3 1600 239 203 0 17 chr4 133103278 133103338 -22526782 + A-rich Low_complexity Low_complexity 2 60 0 3 1600 1571 0 6 0 chr4 133103338 133103517 -22526603 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1600 917 131 21 0 chr4 133103803 133103948 -22526172 + B1_Mus1 SINE Alu 1 148 0 3 1600 26 50 0 0 chr4 133103948 133103988 -22526132 + AT_rich Low_complexity Low_complexity 1 40 0 3 1600 1187 48 0 0 chr4 133103988 133104135 -22525985 - B1_Mus2 SINE Alu 0 147 1 3 1600 1100 175 24 19 chr4 133104152 133104362 -22525758 - B3 SINE B2 -5 211 1 3 1600 242 221 43 14 chr4 133104513 133104582 -22525538 - ID4 SINE ID -12 71 1 3 1600 292 298 11 11 chr4 133104651 133104746 -22525374 + L1MC4 LINE L1 6894 6988 -1054 3 1600 438 336 80 0 chr4 133104840 133104965 -22525155 + RSINE1 SINE B4 3 137 -28 3 1600 424 164 14 0 chr4 133104993 133105066 -22525054 - B1_Mur1 SINE Alu -2 147 74 3 1600 1075 98 18 0 chr4 133105065 133105228 -22524892 - B2_Mm2 SINE B2 -3 192 27 3 1600 1031 72 0 7 chr4 133105246 133105385 -22524735 - B1_Mm SINE Alu -9 138 1 3 1600 2315 166 0 52 chr4 133105385 133105409 -22524711 - MTC LTR MaLR -6 415 392 3 1600 2170 88 35 3 chr4 133105409 133105728 -22524392 - ORR1A4 LTR MaLR 0 329 1 3 1600 2315 166 0 52 chr4 133105728 133106141 -22523979 - MTC LTR MaLR -30 391 1 3 1600 211 89 0 167 chr4 133106141 133106186 -22523934 + PB1D9 SINE Alu 85 120 0 3 1600 3213 45 0 5 chr4 133106315 133106713 -22523407 + MTA_Mm LTR MaLR 1 396 0 3 1600 659 263 29 6 chr4 133106730 133106902 -22523218 + B3 SINE B2 31 206 -10 3 1600 222 208 0 0 chr4 133106916 133106964 -22523156 + GA-rich Low_complexity Low_complexity 2 49 0 3 1600 406 293 0 16 chr4 133107000 133107125 -22522995 + ID_B1 SINE B4 94 216 -8 3 1600 336 24 0 0 chr4 133107150 133107191 -22522929 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1600 306 281 11 63 chr4 133107192 133107287 -22522833 + RSINE1 SINE B4 15 104 -61 3 1600 375 23 0 0 chr4 133107291 133107335 -22522785 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1600 315 248 93 28 chr4 133107404 133107512 -22522608 + PB1D7 SINE Alu 4 118 -2 3 1600 615 169 71 35 chr4 133107827 133107968 -22522152 + B1_Mus1 SINE Alu 1 146 -2 3 1600 182 263 0 0 chr4 133108438 133108476 -22521644 + MIR SINE MIR 86 123 -85 3 1600 259 236 25 68 chr4 133110015 133110133 -22519987 - MIR SINE MIR -141 121 9 3 1600 392 222 32 43 chr4 133110358 133110452 -22519668 - B1F2 SINE Alu -11 138 46 3 1600 384 328 16 43 chr4 133110521 133110709 -22519411 - MIR SINE MIR -22 240 58 3 1600 339 260 0 0 chr4 133110681 133110758 -22519362 - MIR SINE MIR -147 115 39 3 1600 197 152 12 60 chr4 133110763 133110847 -22519273 + T-rich Low_complexity Low_complexity 2 81 0 3 1600 701 191 50 0 chr4 133110865 133111006 -22519114 + B1_Mus1 SINE Alu 1 148 0 3 1600 921 171 0 0 chr4 133111013 133111183 -22518937 + GA-rich Low_complexity Low_complexity 2 171 0 3 1600 1368 66 16 16 chr4 133111194 133111379 -22518741 + B2_Mm2 SINE B2 2 186 -9 3 1600 718 236 66 10 chr4 133111418 133111440 -22518680 - B3 SINE B2 -7 209 184 3 1600 216 97 0 0 chr4 133111440 133111471 -22518649 + (CATA)n Simple_repeat Simple_repeat 3 33 0 3 1600 718 236 66 10 chr4 133111471 133111645 -22518475 - B3 SINE B2 -33 183 2 3 1600 261 0 0 0 chr4 133111692 133111721 -22518399 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 3 1600 1556 52 5 15 chr4 133112826 133113021 -22517099 - B2_Mm1t SINE B2 0 193 1 3 1600 348 348 16 62 chr4 133113210 133113403 -22516717 - MamRep38 DNA hAT -99 196 13 3 1600 413 192 24 18 chr4 133113794 133113863 -22516257 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 3 1600 189 107 0 0 chr4 133113863 133113891 -22516229 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1600 413 192 24 18 chr4 133113891 133113985 -22516135 + (TCTG)n Simple_repeat Simple_repeat 2 97 0 3 1600 183 80 0 0 chr4 133113987 133114012 -22516108 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1600 378 0 0 0 chr4 133114016 133114058 -22516062 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1600 906 241 10 15 chr4 133114216 133114417 -22515703 - B3 SINE B2 -5 211 12 3 1600 796 157 0 7 chr4 133114417 133114558 -22515562 + ORR1D1 LTR MaLR 3 142 -232 3 1600 631 211 15 22 chr4 133114566 133114693 -22515427 + B1_Mus1 SINE Alu 14 139 -9 3 1600 185 0 40 0 chr4 133114693 133114718 -22515402 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1600 1218 29 0 0 chr4 133114736 133114873 -22515247 + B1_Mus1 SINE Alu 2 138 -10 3 1600 216 67 0 0 chr4 133114873 133114903 -22515217 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1600 442 114 168 0 chr4 133114903 133115003 -22515117 + B1_Mur3 SINE Alu 23 148 -1 3 1600 773 251 80 5 chr4 133115026 133115226 -22514894 + ID_B1 SINE B4 4 218 -6 3 1600 230 81 27 0 chr4 133115235 133115272 -22514848 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 3 1600 944 147 188 9 chr4 133115426 133115617 -22514503 + B3 SINE B2 3 216 0 3 1600 998 17 11 58 chr4 133116217 133116405 -22513715 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1600 333 48 63 16 chr4 133116408 133116471 -22513649 + (GTGTG)n Simple_repeat Simple_repeat 5 70 0 3 1600 941 22 43 28 chr4 133116471 133116796 -22513324 + (TG)n Simple_repeat Simple_repeat 1 330 0 3 1600 546 146 200 0 chr4 133116796 133116906 -22513214 - B1_Mur4 SINE Alu -9 141 10 3 1600 2115 140 64 68 chr4 133118011 133118479 -22511641 - RMER4A LTR ERVK 0 466 1 4 1600 804 318 53 66 chr4 133118730 133119278 -22510842 + RLTR26 LTR ERVK 97 637 -5 4 1600 367 285 41 0 chr4 133119440 133119563 -22510557 + ID_B1 SINE B4 92 219 -5 4 1600 611 260 29 113 chr4 133119592 133119705 -22510415 + ID_B1 SINE B4 2 201 -91 4 1600 852 148 7 14 chr4 133119705 133119849 -22510271 + B1_Mur2 SINE Alu 6 148 -1 4 1600 611 260 29 113 chr4 133119849 133119875 -22510245 + ID_B1 SINE B4 202 250 -42 4 1600 266 268 80 23 chr4 133119963 133120051 -22510069 + ID_B1 SINE B4 63 155 -69 4 1600 413 305 61 8 chr4 133120045 133120177 -22509943 + RSINE1 SINE B4 10 148 -17 4 1600 556 173 0 9 chr4 133120385 133120490 -22509630 + B1_Mur3 SINE Alu 35 138 -11 4 1600 267 122 0 0 chr4 133120506 133120555 -22509565 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1600 683 226 69 6 chr4 133120574 133120734 -22509386 + B3 SINE B2 11 180 -36 4 1600 1256 41 0 0 chr4 133120819 133120965 -22509155 + B1_Mm SINE Alu 2 147 0 4 1600 563 127 48 19 chr4 133120980 133121084 -22509036 - Lx3C LINE L1 0 6976 6870 4 1600 1581 53 0 0 chr4 133121086 133121275 -22508845 - B2_Mm1t SINE B2 -4 189 1 4 1600 909 209 52 10 chr4 133121283 133121476 -22508644 - B3 SINE B2 -11 205 5 4 1600 370 237 163 10 chr4 133121514 133121612 -22508508 - PB1D9 SINE Alu -7 113 1 4 1600 998 167 0 0 chr4 133121735 133121885 -22508235 + B1_Mur4 SINE Alu 1 150 0 4 1600 951 78 0 0 chr4 133121891 133122020 -22508100 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 4 1600 880 233 69 0 chr4 133122095 133122297 -22507823 - B3 SINE B2 0 216 1 4 1600 320 314 90 85 chr4 133122305 133122355 -22507765 - L1ME2 LINE L1 -279 5885 5832 4 1600 1728 21 0 0 chr4 133122355 133122546 -22507574 - B2_Mm1a SINE B2 -1 192 2 4 1600 326 300 83 53 chr4 133122546 133122718 -22507402 - L1ME2 LINE L1 -333 5831 5662 4 1600 1446 67 6 0 chr4 133122723 133122901 -22507219 - B2_Mm1a SINE B2 -14 179 1 4 1600 881 71 8 0 chr4 133123028 133123154 -22506966 - B1_Mus2 SINE Alu 0 147 21 4 1600 363 203 93 86 chr4 133123033 133123173 -22506947 - B4 SINE B4 -71 221 81 4 1600 316 203 29 0 chr4 133123189 133123258 -22506862 - B1_Mur3 SINE Alu 0 149 79 4 1600 445 314 79 33 chr4 133123250 133123464 -22506656 - B4 SINE B4 -66 226 3 4 1600 275 227 61 0 chr4 133123546 133123612 -22506508 - L1ME2 LINE L1 -566 5607 5538 4 1600 1374 68 11 6 chr4 133123632 133123809 -22506311 + B2_Mm1t SINE B2 2 179 -14 4 1600 255 164 208 62 chr4 133123856 133123926 -22506194 + B2_Mm2 SINE B2 47 129 -66 4 1600 1412 81 5 5 chr4 133123926 133124112 -22506008 - B2_Mm1a SINE B2 -7 186 1 4 1600 255 164 208 62 chr4 133124112 133124171 -22505949 + B2_Mm2 SINE B2 130 194 -1 4 1600 1238 34 0 26 chr4 133124205 133124356 -22505764 + B1_Mm SINE Alu 1 147 0 4 1600 180 0 0 0 chr4 133124356 133124376 -22505744 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1600 1188 75 0 0 chr4 133124385 133124532 -22505588 + B1_Mus1 SINE Alu 2 148 0 4 1600 233 279 49 0 chr4 133124541 133124602 -22505518 + RSINE1 SINE B4 82 145 -20 4 1600 1155 68 0 20 chr4 133124774 133124923 -22505197 - B1_Mus2 SINE Alu 0 147 2 4 1600 417 215 43 11 chr4 133124932 133125026 -22505094 + PB1D7 SINE Alu 19 115 -5 4 1600 611 137 129 0 chr4 133125044 133125168 -22504952 + B1_Mus2 SINE Alu 8 147 0 4 1600 350 316 0 10 chr4 133125406 133125502 -22504618 - PB1D7 SINE Alu -9 111 17 4 1600 683 103 25 25 chr4 133125610 133125729 -22504391 - L1Md_F2 LINE L1 -1 6581 6463 4 1600 812 315 134 56 chr4 133125876 133126428 -22503692 - MER92B LTR ERV1 -41 595 1 4 1600 765 61 0 0 chr4 133126441 133126540 -22503580 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 4 1600 1056 89 7 7 chr4 133126548 133126695 -22503425 - B1_Mus2 SINE Alu 0 147 1 4 1600 786 261 0 22 chr4 133126708 133126888 -22503232 - B3 SINE B2 -1 215 40 4 1600 352 164 15 15 chr4 133126935 133127003 -22503117 - RMER15 LTR ERVL -105 470 403 4 1600 440 254 13 80 chr4 133127061 133127211 -22502909 - RMER15 LTR ERVL -14 561 422 4 1600 690 185 0 0 chr4 133127254 133127389 -22502731 + A-rich Low_complexity Low_complexity 2 136 0 4 1600 364 247 72 49 chr4 133127389 133127576 -22502544 - RMER15 LTR ERVL -201 374 62 4 1600 741 208 121 35 chr4 133127592 133127626 -22502494 - B3 SINE B2 0 216 188 4 1600 1219 135 0 54 chr4 133127626 133127665 -22502455 - B2_Mm2 SINE B2 -1 194 159 4 1600 1163 49 0 27 chr4 133127665 133127812 -22502308 + B1_Mus1 SINE Alu 1 143 -5 4 1600 450 0 0 0 chr4 133127814 133127864 -22502256 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1600 1219 135 0 54 chr4 133127864 133128025 -22502095 - B2_Mm2 SINE B2 -37 158 2 4 1600 741 208 121 35 chr4 133128025 133128189 -22501931 - B3 SINE B2 -29 187 4 4 1600 2926 155 220 7 chr4 133128275 133128311 -22501809 + RMER21A LTR ERV1 88 123 -824 4 1600 1194 48 7 0 chr4 133128311 133128456 -22501664 + B1_Mm SINE Alu 2 147 0 4 1600 2926 155 220 7 chr4 133128456 133129095 -22501025 + RMER21A LTR ERV1 124 906 -41 4 1600 349 317 0 9 chr4 133129125 133129230 -22500890 - Lx8 LINE L1 -255 7218 7115 4 1600 1654 42 0 0 chr4 133129264 133129454 -22500666 + B2_Mm1a SINE B2 2 191 -2 4 1600 1275 103 43 0 chr4 133129657 133129841 -22500279 + B2_Mm1t SINE B2 2 193 0 4 1600 1096 70 35 0 chr4 133129867 133130010 -22500110 - B1_Mus1 SINE Alu 0 148 1 4 1600 909 214 55 20 chr4 133130021 133130221 -22499899 - B3 SINE B2 -9 207 1 4 1600 620 214 53 0 chr4 133130235 133130366 -22499754 - B1_Mur2 SINE Alu -11 138 1 4 1600 572 178 178 0 chr4 133131406 133131524 -22498596 + B1_Mus2 SINE Alu 1 139 -8 4 1600 660 209 7 41 chr4 133131728 133131873 -22498247 + B1_Mur2 SINE Alu 9 148 -1 4 1600 231 114 0 0 chr4 133131937 133131972 -22498148 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1600 361 278 48 87 chr4 133132077 133132129 -22497991 - ID_B1 SINE B4 -21 203 150 4 1600 434 223 219 16 chr4 133132129 133132252 -22497868 + B1_Mur1 SINE Alu 1 148 -1 4 1600 361 278 48 87 chr4 133132252 133132325 -22497795 - ID_B1 SINE B4 -75 149 83 4 1600 452 287 26 0 chr4 133132388 133132503 -22497617 + RSINE1 SINE B4 35 152 -13 4 1600 945 63 216 25 chr4 133132526 133132688 -22497432 + B2_Mm1t SINE B2 1 193 0 4 1600 696 83 91 0 chr4 133132714 133132825 -22497295 + B3 SINE B2 2 133 -62 4 1600 441 0 0 0 chr4 133132825 133132874 -22497246 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1600 523 208 149 40 chr4 133132874 133132921 -22497199 + B2_Mm2 SINE B2 134 180 -15 4 1600 1602 42 5 0 chr4 133132921 133133111 -22497009 + B2_Mm1a SINE B2 1 191 -2 4 1600 523 208 149 40 chr4 133133111 133133126 -22496994 + B2_Mm2 SINE B2 181 195 0 4 1600 1568 52 0 5 chr4 133133413 133133605 -22496515 - B2_Mm2 SINE B2 -4 191 1 4 1600 320 259 53 53 chr4 133133611 133133725 -22496395 - PB1D10 SINE Alu 0 117 4 4 1600 203 162 0 0 chr4 133134197 133134234 -22495886 + GA-rich Low_complexity Low_complexity 1 37 0 4 1600 779 263 47 5 chr4 133134293 133134484 -22495636 + ID_B1 SINE B4 26 224 0 4 1600 226 318 28 113 chr4 133134492 133134634 -22495486 + Charlie4z DNA MER1_type 3 132 -35 4 1600 327 286 150 0 chr4 133135151 133135298 -22494822 + MIRc SINE MIR 13 181 -87 4 1600 661 225 80 0 chr4 133136890 133137028 -22493092 + B1_Mur4 SINE Alu 2 150 0 4 1600 343 243 168 84 chr4 133137050 133137252 -22492868 + ID_B1 SINE B4 2 220 -4 4 1600 412 246 75 60 chr4 133137625 133137759 -22492361 - B1_Mur2 SINE Alu 0 149 14 4 1600 942 143 7 20 chr4 133137805 133137955 -22492165 - B1_Mus1 SINE Alu 0 148 1 4 1600 965 214 70 0 chr4 133137963 133138164 -22491956 - B3 SINE B2 -1 215 1 4 1600 802 73 0 0 chr4 133138626 133138736 -22491384 - B1_Mus1 SINE Alu 0 148 39 4 1600 266 172 34 17 chr4 133138684 133138743 -22491377 - 4.5SRNA scRNA scRNA -8 86 27 4 1600 323 164 110 0 chr4 133138760 133138833 -22491287 - PB1D9 SINE Alu -9 111 31 4 1600 218 299 152 0 chr4 133140888 133140998 -22489122 + MIR SINE MIR 36 165 -103 4 1600 328 227 78 58 chr4 133141148 133141251 -22488869 + BC1_Mm scRNA scRNA 1 105 -47 4 1600 1184 75 0 0 chr4 133141304 133141451 -22488669 + B1_Mus1 SINE Alu 2 148 0 4 1600 307 237 0 92 chr4 133141556 133141709 -22488411 + (CAGAA)n Simple_repeat Simple_repeat 3 141 0 4 1600 482 239 159 18 chr4 133142230 133142400 -22487720 - MLT1A LTR MaLR 0 374 181 4 1600 191 254 183 0 chr4 133142926 133142997 -22487123 - MIRb SINE MIR -12 256 173 4 1600 357 203 27 0 chr4 133143002 133143076 -22487044 + PB1D10 SINE Alu 6 81 -36 4 1600 493 246 31 31 chr4 133143086 133143216 -22486904 - B3A SINE B2 -52 146 17 4 1600 374 297 0 117 chr4 133143355 133143435 -22486685 - B1F SINE Alu -9 140 68 4 1600 1651 42 0 0 chr4 133143435 133143626 -22486494 - B2_Mm1a SINE B2 -1 192 2 4 1600 374 297 0 117 chr4 133143626 133143690 -22486430 - B1F SINE Alu -82 67 13 4 1600 839 160 7 20 chr4 133143703 133143850 -22486270 - B1_Mur3 SINE Alu 0 149 5 4 1600 364 236 42 0 chr4 133144282 133144354 -22485766 - ID4_ SINE ID -5 78 4 4 1600 904 194 120 34 chr4 133144952 133145160 -22484960 + URR1A DNA MER1_type 1 226 0 4 1600 336 255 94 0 chr4 133146067 133146173 -22483947 - B1F1 SINE Alu -1 148 33 4 1600 485 232 61 18 chr4 133146296 133146410 -22483710 + PB1D7 SINE Alu 1 119 -1 4 1600 31 26 0 0 chr4 133147614 133147652 -22482468 + AT_rich Low_complexity Low_complexity 1 38 0 4 1600 1479 54 16 21 chr4 133147953 133148141 -22481979 - B2_Mm2 SINE B2 -8 187 1 4 1600 956 39 147 0 chr4 133148152 133148281 -22481839 - B1_Mus1 SINE Alu 0 148 1 4 1600 583 269 58 124 chr4 133148340 133148565 -22481555 + ID_B1 SINE B4 2 211 -13 4 1600 290 235 224 9 chr4 133149688 133149804 -22480316 + ID_B1 SINE B4 82 222 -2 4 1600 1270 34 0 7 chr4 133149867 133150016 -22480104 + B1_Mus1 SINE Alu 1 148 0 5 1600 267 54 0 0 chr4 133150021 133150058 -22480062 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1600 1449 62 17 0 chr4 133150072 133150248 -22479872 + B2_Mm2 SINE B2 1 179 -16 5 1600 585 40 0 0 chr4 133150250 133150326 -22479794 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 5 1600 386 165 70 30 chr4 133150326 133150426 -22479694 + B1_Mur1 SINE Alu 46 149 0 5 1600 225 0 0 0 chr4 133150426 133150451 -22479669 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 5 1600 644 123 57 0 chr4 133150483 133150589 -22479531 + B1_Mur3 SINE Alu 32 143 -6 5 1600 696 258 62 0 chr4 133150591 133150785 -22479335 - B3 SINE B2 -3 213 8 5 1600 540 0 0 0 chr4 133150823 133150883 -22479237 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1600 533 272 84 14 chr4 133150901 133151196 -22478924 - RSINE1 SINE B4 -21 271 4 5 1600 676 75 0 36 chr4 133151925 133152036 -22478084 - BC1_Mm scRNA scRNA -45 107 1 5 1600 510 129 24 0 chr4 133152298 133152383 -22477737 + PB1D9 SINE Alu 34 120 0 5 1600 198 0 0 0 chr4 133152383 133152405 -22477715 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1600 1183 62 0 7 chr4 133152405 133152545 -22477575 + B1_Mus2 SINE Alu 1 140 -7 5 1600 206 32 32 0 chr4 133152545 133152576 -22477544 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1600 21 0 0 0 chr4 133152670 133152691 -22477429 + AT_rich Low_complexity Low_complexity 1 21 0 5 1600 432 250 92 9 chr4 133152691 133152800 -22477320 - ID_B1 SINE B4 -25 199 82 5 1600 207 220 0 0 chr4 133152903 133152953 -22477167 + CT-rich Low_complexity Low_complexity 6 55 0 5 1600 322 231 51 0 chr4 133153321 133153399 -22476721 - ID4_ SINE ID 0 83 2 5 1600 620 186 292 6 chr4 133153427 133153595 -22476525 + B3 SINE B2 1 216 0 5 1600 235 305 92 7 chr4 133153615 133153757 -22476363 - L1MB7 LINE L1 -21 6163 6010 5 1600 186 43 0 0 chr4 133153778 133153801 -22476319 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1600 229 252 261 0 chr4 133153801 133153912 -22476208 - B3A SINE B2 -48 150 11 5 1600 299 184 3 69 chr4 133153917 133154003 -22476117 - B1_Mur2 SINE Alu -35 114 35 5 1600 768 241 92 25 chr4 133154187 133154383 -22475737 - B3 SINE B2 -6 210 2 5 1600 213 308 121 15 chr4 133155390 133155506 -22474614 - MIR SINE MIR -124 144 33 5 1600 366 318 130 19 chr4 133159534 133159688 -22470432 + ID_B1 SINE B4 1 171 -53 5 1600 392 250 23 0 chr4 133159610 133159698 -22470422 + B1_Mur2 SINE Alu 14 103 -46 5 1600 256 238 173 12 chr4 133159694 133159775 -22470345 - ID_B1 SINE B4 -127 97 4 5 1600 188 100 25 0 chr4 133160391 133160431 -22469689 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1600 1248 28 7 0 chr4 133160500 133160645 -22469475 + B1_Mus2 SINE Alu 2 147 0 5 1600 192 40 0 0 chr4 133160648 133160673 -22469447 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1600 194 302 48 0 chr4 133161021 133161084 -22469036 + MIR SINE MIR 88 153 -55 5 1600 1123 107 21 63 chr4 133164842 133164990 -22465130 + B2_Mm2 SINE B2 1 145 -50 5 1600 222 118 0 0 chr4 133164990 133165024 -22465096 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1600 1163 81 0 0 chr4 133165032 133165180 -22464940 - B1_Mus1 SINE Alu 0 148 1 5 1600 1123 107 21 63 chr4 133165180 133165211 -22464909 + B2_Mm2 SINE B2 148 181 -14 5 1600 357 124 0 5 chr4 133165243 133165308 -22464812 + B2_Mm2 SINE B2 47 109 -107 5 1600 298 268 221 0 chr4 133165350 133165477 -22464643 + RSINE1 SINE B4 2 156 -9 5 1600 293 263 13 0 chr4 133166010 133166086 -22464034 - PB1D7 SINE Alu -21 99 23 5 1600 270 188 138 15 chr4 133166464 133166529 -22463591 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 5 1600 1880 155 100 8 chr4 133166789 133167169 -22462951 + MTC LTR MaLR 1 401 -20 5 1600 979 80 73 0 chr4 133167534 133167671 -22462449 - B1_Mus2 SINE Alu 0 147 1 5 1600 497 259 18 0 chr4 133167681 133167793 -22462327 - ID_B1 SINE B4 -1 223 110 5 1600 711 234 23 92 chr4 133167846 133168063 -22462057 - B3 SINE B2 0 216 15 5 1600 332 241 35 46 chr4 133168059 133168146 -22461974 - PB1D7 SINE Alu -32 88 3 5 1600 438 263 33 17 chr4 133168423 133168543 -22461577 - B3 SINE B2 -7 209 88 5 1601 329 288 0 0 chr4 133169183 133169256 -22460864 + RSINE1 SINE B4 1 73 -92 5 1601 180 0 0 0 chr4 133170883 133170903 -22459217 + (CGGGA)n Simple_repeat Simple_repeat 2 21 0 5 1601 234 266 96 0 chr4 133171657 133171751 -22458369 + B3A SINE B2 9 111 -87 5 1601 366 200 35 12 chr4 133171848 133171934 -22458186 + PB1D10 SINE Alu 1 88 -29 5 1601 355 295 90 69 chr4 133172132 133172165 -22457955 + B4A SINE B4 52 170 -122 5 1601 787 181 7 0 chr4 133172165 133172303 -22457817 + B1_Mur2 SINE Alu 11 149 0 5 1601 355 295 90 69 chr4 133172303 133172321 -22457799 + B4A SINE B4 171 244 -48 5 1601 381 93 0 0 chr4 133172321 133172375 -22457745 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 5 1601 224 59 29 0 chr4 133172374 133172408 -22457712 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 5 1601 626 181 0 1 chr4 133172409 133172534 -22457586 - B1_Mur1 SINE Alu -12 137 14 5 1601 528 262 87 7 chr4 133172840 133172990 -22457130 - ID_B1 SINE B4 -32 192 31 5 1601 214 237 33 33 chr4 133173010 133173071 -22457049 - PB1D10 SINE Alu -11 106 46 5 1601 220 193 211 0 chr4 133173145 133173202 -22456918 - MIRb SINE MIR -143 125 57 5 1601 602 269 80 111 chr4 133173209 133173435 -22456685 + ID_B1 SINE B4 6 224 0 5 1601 1098 57 0 0 chr4 133173439 133173580 -22456540 + B1_Mus1 SINE Alu 2 142 -6 5 1601 228 67 0 0 chr4 133173582 133173612 -22456508 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5 1601 208 309 99 9 chr4 133173762 133173873 -22456247 + MIRb SINE MIR 30 150 -118 5 1601 526 200 0 9 chr4 133174194 133174307 -22455813 + B1_Mur4 SINE Alu 12 116 -4 5 1601 531 0 0 0 chr4 133174307 133174366 -22455754 + (TAAAA)n Simple_repeat Simple_repeat 4 62 0 5 1601 267 291 107 18 chr4 133174455 133174567 -22455553 - MER46C DNA MER2_type -10 328 207 5 1601 292 113 82 36 chr4 133174636 133174703 -22455417 - MT2B LTR ERVL -334 250 179 5 1601 684 63 11 0 chr4 133174704 133174799 -22455321 + B2_Mm2 SINE B2 2 97 -98 5 1601 888 56 79 0 chr4 133174815 133174941 -22455179 - B1_Mus2 SINE Alu 0 147 12 5 1601 684 33 11 0 chr4 133174940 133175032 -22455088 + B2_Mm1t SINE B2 87 179 -14 5 1601 673 85 84 9 chr4 133175032 133175139 -22454981 + PB1D9 SINE Alu 1 115 -5 5 1601 23 0 0 0 chr4 133175145 133175168 -22454952 + AT_rich Low_complexity Low_complexity 1 23 0 5 1601 389 133 13 0 chr4 133175214 133175289 -22454831 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1601 207 0 0 0 chr4 133175289 133175312 -22454808 + (GGA)n Simple_repeat Simple_repeat 2 24 0 5 1601 381 274 18 9 chr4 133175319 133175433 -22454687 + PB1D9 SINE Alu 1 115 -5 5 1601 718 224 156 0 chr4 133176230 133176409 -22453711 + B3 SINE B2 5 211 -5 5 1601 186 268 0 0 chr4 133177246 133177287 -22452833 + MIRc SINE MIR 108 148 -120 5 1601 938 118 7 0 chr4 133177384 133177519 -22452601 + B1_Mus2 SINE Alu 1 136 -11 5 1601 243 0 0 0 chr4 133177520 133177547 -22452573 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1601 1216 24 115 6 chr4 133177559 133177724 -22452396 + B2_Mm2 SINE B2 2 184 -11 5 1601 275 161 18 0 chr4 133177724 133177780 -22452340 + GA-rich Low_complexity Low_complexity 1 57 0 5 1601 484 310 25 19 chr4 133177863 133178021 -22452099 + ID_B1 SINE B4 3 161 -63 5 1601 213 170 191 0 chr4 133178713 133178760 -22451360 - B1_Mur1 SINE Alu -15 134 79 5 1601 643 259 97 15 chr4 133178807 133179003 -22451117 + B3 SINE B2 1 212 -4 5 1601 587 174 17 9 chr4 133179020 133179136 -22450984 - PB1D9 SINE Alu -2 118 2 5 1601 210 37 0 0 chr4 133179136 133179163 -22450957 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1601 318 239 118 110 chr4 133179185 133179312 -22450808 + B1F2 SINE Alu 21 148 -1 5 1601 198 128 0 0 chr4 133179318 133179357 -22450763 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 5 1601 1183 48 0 0 chr4 133179395 133179541 -22450579 + B1_Mus2 SINE Alu 1 146 -1 5 1601 307 283 80 10 chr4 133180029 133180129 -22449991 - MER81 DNA AcHobo -1 113 7 5 1601 660 94 0 31 chr4 133181078 133181198 -22448922 - B1_Mur4 SINE Alu 0 150 14 5 1601 289 337 47 98 chr4 133182171 133182385 -22447735 + L2a LINE L2 3173 3426 0 5 1601 336 192 13 52 chr4 133182446 133182523 -22447597 + ID_B1 SINE B4 151 224 0 5 1601 841 150 0 13 chr4 133182618 133182767 -22447353 - B1_Mur2 SINE Alu -1 148 2 5 1601 402 316 59 12 chr4 133182770 133182940 -22447180 + MIR SINE MIR 79 256 -6 5 1601 205 310 210 0 chr4 133182960 133183060 -22447060 + L2a LINE L2 3268 3388 -38 5 1601 1466 42 5 20 chr4 133183354 133183550 -22446570 + B2_Mm1a SINE B2 1 193 0 5 1601 237 143 24 0 chr4 133183611 133183653 -22446467 - MER117 DNA MER1_type -46 151 109 5 1601 371 291 128 0 chr4 133183734 133183749 -22446371 - B1F SINE Alu -16 133 84 5 1601 371 272 0 0 chr4 133183749 133183830 -22446290 - ID_B1 SINE B4 -29 195 115 5 1601 236 298 108 47 chr4 133183759 133183907 -22446213 - MT2B LTR ERVL -341 260 104 5 1601 371 291 128 0 chr4 133183830 133183851 -22446269 - B1F SINE Alu -16 83 2 5 1601 538 208 9 28 chr4 133183872 133183981 -22446139 + ID_B1 SINE B4 116 222 -2 6 1601 207 0 0 0 chr4 133183984 133184007 -22446113 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1601 447 318 40 0 chr4 133184011 133184159 -22445961 + RSINE1 SINE B4 4 157 -8 6 1601 240 279 44 0 chr4 133184231 133184299 -22445821 - PB1 SINE Alu -29 98 28 6 1601 951 220 19 5 chr4 133184352 133184562 -22445558 - B3 SINE B2 -2 214 2 6 1601 672 125 0 0 chr4 133184681 133184809 -22445311 + (CAGT)n Simple_repeat Simple_repeat 1 128 0 6 1601 399 351 71 33 chr4 133184946 133185000 -22445120 + ID_B1 SINE B4 5 224 0 6 1601 611 240 0 51 chr4 133185000 133185158 -22444962 + B1_Mur4 SINE Alu 1 150 0 6 1601 214 296 161 0 chr4 133185295 133185376 -22444744 - ID_B1 SINE B4 -127 97 4 5 1601 346 203 14 0 chr4 133185445 133185514 -22444606 + ID4_ SINE ID 3 72 -11 6 1601 235 287 158 11 chr4 133185578 133185673 -22444447 + PB1D10 SINE Alu 1 109 -8 6 1601 638 182 9 0 chr4 133185684 133185794 -22444326 + PB1D9 SINE Alu 2 112 -8 6 1601 278 235 59 0 chr4 133185826 133185894 -22444226 - MIRb SINE MIR -29 239 168 6 1601 1336 29 0 23 chr4 133185896 133185912 -22444208 - B2_Mm1a SINE B2 -20 173 161 6 1601 198 0 0 0 chr4 133185912 133185934 -22444186 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 6 1601 1336 29 0 23 chr4 133185934 133186094 -22444026 - B2_Mm1a SINE B2 -33 160 1 6 1601 475 257 63 35 chr4 133187893 133188077 -22442043 - MIRb SINE MIR -49 219 10 6 1601 53 93 0 0 chr4 133189125 133189276 -22440844 + GC_rich Low_complexity Low_complexity 1 151 0 6 1601 33 94 0 0 chr4 133189304 133189400 -22440720 + GC_rich Low_complexity Low_complexity 1 96 0 6 1601 229 364 60 101 chr4 133189895 133190112 -22440008 - MLT1E1 LTR MaLR -45 609 402 6 1601 1024 75 7 0 chr4 133190248 133190394 -22439726 + B1_Mus2 SINE Alu 1 147 0 6 1601 341 302 43 60 chr4 133190555 133190698 -22439422 - B3A SINE B2 -58 158 21 6 1601 254 93 0 65 chr4 133190698 133190744 -22439376 + ORR1A4 LTR MaLR 1 43 -286 6 1601 490 107 0 6 chr4 133190725 133190807 -22439313 + ORR1A4 LTR MaLR 253 413 -8 6 1601 2190 146 23 25 chr4 133190811 133191206 -22438914 + ORR1A4-int LTR MaLR 1 394 -1569 6 1601 1211 32 0 0 chr4 133191200 133191354 -22438766 - B2_Mm2 SINE B2 -41 154 1 6 1601 21 0 0 0 chr4 133191363 133191384 -22438736 + AT_rich Low_complexity Low_complexity 1 21 0 6 1601 1382 80 5 0 chr4 133191397 133191584 -22438536 - B2_Mm1t SINE B2 -4 189 2 6 1601 3040 149 26 163 chr4 133191586 133191774 -22438346 + ORR1A4-int LTR MaLR 378 574 -1389 6 1601 1334 77 0 16 chr4 133191774 133191958 -22438162 - B2_Mm2 SINE B2 -14 181 1 6 1601 4540 149 26 163 chr4 133191958 133192608 -22437512 + ORR1A4-int LTR MaLR 560 1101 -862 6 1601 886 106 185 0 chr4 133192608 133192759 -22437361 + B2_Mm1t SINE B2 1 179 -14 6 1601 5272 103 19 134 chr4 133192759 133193935 -22436185 + ORR1A4-int LTR MaLR 912 1928 -35 6 1601 405 0 0 0 chr4 133193935 133193980 -22436140 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 6 1601 288 0 0 0 chr4 133193980 133194012 -22436108 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1601 1459 118 56 108 chr4 133194676 133194981 -22435139 + ORR1A4 LTR MaLR 1 289 -40 6 1601 700 62 0 0 chr4 133194981 133195077 -22435043 + B1_Mm SINE Alu 52 147 0 6 1601 362 73 0 83 chr4 133195089 133195149 -22434971 + ORR1A4 LTR MaLR 340 394 0 6 1601 500 341 27 11 chr4 133195171 133195355 -22434765 - MLT1F2 LTR MaLR -370 190 4 6 1601 462 211 18 44 chr4 133195455 133195569 -22434551 + PB1D7 SINE Alu 10 120 0 6 1601 305 302 72 68 chr4 133195624 133195757 -22434363 + ID_B1 SINE B4 36 224 0 6 1601 579 194 29 43 chr4 133195757 133195897 -22434223 + B1F2 SINE Alu 1 138 -11 6 1601 391 299 80 20 chr4 133195897 133196023 -22434097 + ID_B1 SINE B4 66 190 -34 6 1601 3712 106 21 7 chr4 133196023 133196582 -22433538 + RMER2 LTR ERV1 1 567 0 6 1601 391 299 80 20 chr4 133196582 133196605 -22433515 + ID_B1 SINE B4 191 223 -1 6 1601 550 143 19 0 chr4 133196609 133196714 -22433406 + GA-rich Low_complexity Low_complexity 3 109 0 6 1601 1230 103 16 0 chr4 133196921 133197105 -22433015 - B2_Mm2 SINE B2 -7 188 2 6 1601 308 264 24 145 chr4 133197223 133197347 -22432773 + MT2B LTR ERVL 156 264 -337 6 1601 772 169 28 0 chr4 133197238 133197380 -22432740 + B1_Mus1 SINE Alu 2 147 -1 6 1601 180 125 0 0 chr4 133197394 133197426 -22432694 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1601 1088 57 43 0 chr4 133197426 133197567 -22432553 - B1_Mm SINE Alu 0 147 1 6 1601 291 296 94 27 chr4 133197572 133197703 -22432417 - B3A SINE B2 -1 215 75 6 1601 1278 136 83 0 chr4 133197703 133197931 -22432189 + RMER6C LTR ERVK 1 247 -443 6 1601 1204 128 5 54 chr4 133197944 133198188 -22431932 + RMER6C LTR ERVK 458 690 0 6 1601 341 222 0 100 chr4 133198188 133198225 -22431895 - B3 SINE B2 -164 52 20 6 1601 4255 112 68 6 chr4 133198225 133198935 -22431185 + RMER6A LTR ERVK 1 754 -2 6 1601 341 222 0 100 chr4 133198935 133198950 -22431170 - B3 SINE B2 -197 19 8 6 1601 285 191 95 0 chr4 133198977 133199040 -22431080 + ID4_ SINE ID 1 69 -14 6 1601 510 61 0 0 chr4 133199040 133199106 -22431014 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1601 759 52 0 0 chr4 133199106 133199202 -22430918 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 6 1601 324 257 16 36 chr4 133199273 133199383 -22430737 + B4A SINE B4 59 167 -125 6 1601 472 135 0 0 chr4 133199312 133199348 -22430772 + B1_Mur4 SINE Alu 13 48 -102 6 1601 557 180 26 80 chr4 133199348 133199499 -22430621 + B3 SINE B2 1 143 -73 6 1601 560 186 24 9 chr4 133199496 133199629 -22430491 + PB1D9 SINE Alu 16 149 -1 6 1601 300 316 0 0 chr4 133199990 133200088 -22430032 - ERVL-E-int LTR ERVL -1990 3677 3580 6 1601 716 204 13 20 chr4 133200237 133200387 -22429733 - RSINE1 SINE B4 -8 157 9 6 1601 806 96 9 0 chr4 133200451 133200566 -22429554 - B1_Mus2 SINE Alu -31 116 1 6 1601 428 200 8 110 chr4 133200465 133200583 -22429537 - MT2B LTR ERVL -344 257 152 6 1601 277 175 159 0 chr4 133200684 133200747 -22429373 + ID4_ SINE ID 1 73 -10 6 1601 258 253 83 52 chr4 133200793 133200889 -22429231 + PB1D7 SINE Alu 22 120 0 6 1601 358 249 43 125 chr4 133200816 133201000 -22429120 + MT2B LTR ERVL 89 257 -344 6 1601 705 154 0 25 chr4 133200904 133201024 -22429096 + B1_Mur3 SINE Alu 12 128 -21 6 1601 908 169 0 7 chr4 133201058 133201207 -22428913 - B1_Mur3 SINE Alu -1 148 1 6 1601 978 224 34 14 chr4 133201215 133201423 -22428697 - B3 SINE B2 -2 214 3 6 1601 407 325 96 21 chr4 133201508 133201747 -22428373 - ERVL-E-int LTR ERVL -3143 2524 2268 6 1601 468 299 79 31 chr4 133201845 133202128 -22427992 - MLT1B LTR MaLR -70 304 1 6 1601 633 278 73 21 chr4 133202293 133202484 -22427636 - B3 SINE B2 -14 202 2 6 1601 1178 85 74 0 chr4 133202581 133202757 -22427363 + B2_Mm2 SINE B2 1 189 -6 6 1601 333 222 536 8 chr4 133202759 133202884 -22427236 + B3 SINE B2 25 215 -1 6 1601 1955 119 22 3 chr4 133202919 133203231 -22426889 + ORR1A3 LTR MaLR 1 318 -8 6 1601 226 300 0 14 chr4 133203396 133203467 -22426653 + ID_B1 SINE B4 136 205 -19 6 1601 1050 104 0 0 chr4 133203505 133203649 -22426471 - B1_Mus1 SINE Alu 0 148 5 6 1601 414 0 0 0 chr4 133203672 133203718 -22426402 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 1601 340 87 0 25 chr4 133203730 133203796 -22426324 - B2_Mm2 SINE B2 -107 109 47 6 1601 1218 94 39 6 chr4 133203814 133203996 -22426124 - B2_Mm2 SINE B2 -6 189 2 6 1601 1162 108 11 0 chr4 133203996 133204172 -22425948 - B2_Mm1t SINE B2 -14 179 2 6 1601 750 200 7 0 chr4 133204175 133204315 -22425805 - B1_Mur4 SINE Alu -1 149 9 6 1601 267 275 88 0 chr4 133204367 133204447 -22425673 + PB1D10 SINE Alu 1 87 -30 6 1601 2070 119 107 0 chr4 133204490 133204844 -22425276 - ORR1B1 LTR MaLR 0 394 3 6 1601 1137 101 131 0 chr4 133204950 133205149 -22424971 - URR1A DNA MER1_type -1 225 1 6 1601 1429 59 0 5 chr4 133205360 133205548 -22424572 - B2_Mm2 SINE B2 -5 190 4 6 1601 482 84 0 0 chr4 133205553 133205624 -22424496 - B1_Mus1 SINE Alu -77 71 1 6 1601 451 182 0 13 chr4 133205624 133205701 -22424419 + B1_Mus2 SINE Alu 14 89 -58 6 1601 310 296 219 11 chr4 133205917 133206187 -22423933 - LTR50 LTR ERVL -363 432 107 6 1601 709 224 61 18 chr4 133206331 133206495 -22423625 + B3 SINE B2 42 212 -4 6 1601 1155 56 117 6 chr4 133206528 133206690 -22423430 + B2_Mm2 SINE B2 1 180 -15 6 1601 1110 82 0 0 chr4 133206710 133206857 -22423263 + B1_Mm SINE Alu 1 147 0 6 1601 212 175 0 0 chr4 133206857 133206897 -22423223 + A-rich Low_complexity Low_complexity 1 40 0 6 1601 289 312 7 99 chr4 133206917 133206985 -22423135 - RSINE1 SINE B4 0 165 100 6 1601 1246 109 5 0 chr4 133206985 133207177 -22422943 - B2_Mm1a SINE B2 0 193 1 6 1601 289 312 7 99 chr4 133207177 133207250 -22422870 - RSINE1 SINE B4 -66 99 37 6 1601 282 333 135 66 chr4 133207300 133207753 -22422367 + MLT1J-int LTR MaLR 761 1244 -143 6 1601 445 189 118 39 chr4 133207895 133208022 -22422098 + MER53 DNA hAT 1 137 -56 6 1601 361 292 9 36 chr4 133208259 133208369 -22421751 + RSINE1 SINE B4 3 109 -56 6 1601 495 0 0 0 chr4 133208374 133208429 -22421691 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1601 596 38 13 0 chr4 133208471 133208550 -22421570 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1601 281 247 117 0 chr4 133208824 133208901 -22421219 + B1F1 SINE Alu 13 98 -51 6 1601 497 189 129 16 chr4 133208920 133209044 -22421076 - B1_Mus2 SINE Alu -8 139 2 6 1601 299 277 58 29 chr4 133209129 133209233 -22420887 - RSINE1 SINE B4 -57 108 2 6 1601 251 309 0 0 chr4 133209275 133209330 -22420790 + polypurine Low_complexity Low_complexity 3 57 0 6 1601 985 116 7 7 chr4 133209365 133209512 -22420608 + B1_Mus1 SINE Alu 1 147 -1 6 1601 1186 85 96 0 chr4 133209536 133209713 -22420407 + B2_Mm2 SINE B2 2 195 0 6 1601 381 135 44 22 chr4 133209791 133209882 -22420238 - L1Md_F2 LINE L1 -2 6580 6488 6 1601 1131 34 0 64 chr4 133209915 133210072 -22420048 + B1_Mm SINE Alu 1 147 0 6 1601 659 177 24 8 chr4 133210081 133210206 -22419914 - B1_Mur1 SINE Alu -13 136 10 7 1601 335 250 0 0 chr4 133210358 133210426 -22419694 + ID_B1 SINE B4 110 177 -47 7 1601 348 144 117 26 chr4 133210425 133210517 -22419603 - B1_Mus1 SINE Alu 0 120 1 7 1601 833 145 6 28 chr4 133210539 133210716 -22419404 + T-rich Low_complexity Low_complexity 4 176 0 7 1601 307 123 77 0 chr4 133210716 133210781 -22419339 - B2_Mm1t SINE B2 0 193 124 7 1601 953 78 0 0 chr4 133210782 133210910 -22419210 + B2_Mm1t SINE B2 2 129 -64 7 1601 1211 83 55 0 chr4 133210911 133210934 -22419186 - B2_Mm2 SINE B2 -2 193 163 7 1601 342 0 0 0 chr4 133210934 133210972 -22419148 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 1601 1211 83 55 0 chr4 133210972 133211129 -22418991 - B2_Mm2 SINE B2 -33 162 4 7 1601 255 149 43 0 chr4 133211191 133211238 -22418882 - ORR1D1 LTR MaLR 0 374 326 7 1601 207 25 75 0 chr4 133211238 133211278 -22418842 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 7 1601 1309 19 0 0 chr4 133211278 133211438 -22418682 - B2_Mm1a SINE B2 -33 160 1 7 1601 727 259 231 11 chr4 133211438 133211710 -22418410 - ORR1D1 LTR MaLR -42 332 1 7 1601 417 280 31 125 chr4 133211710 133211859 -22418261 - B4 SINE B4 -117 175 39 7 1601 1361 72 17 0 chr4 133211859 133212040 -22418080 - B2_Mm2 SINE B2 -10 185 2 7 1601 417 280 31 125 chr4 133212040 133212082 -22418038 - B4 SINE B4 -254 38 2 7 1601 251 291 84 30 chr4 133212228 133212359 -22417761 - RMER15 LTR ERVL -13 562 425 7 1601 182 291 36 0 chr4 133212508 133212563 -22417557 - MIRc SINE MIR -127 141 85 7 1601 1665 148 68 18 chr4 133213009 133213394 -22416726 + RMER17C LTR ERVK 7 410 0 7 1601 243 88 0 0 chr4 133213432 133213466 -22416654 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 7 1601 645 222 15 0 chr4 133213466 133213601 -22416519 - B1_Mur2 SINE Alu 0 149 13 7 1601 349 281 18 67 chr4 133213601 133213630 -22416490 - ID_B1 SINE B4 0 224 69 7 1601 217 218 128 0 chr4 133213654 133213732 -22416388 + B1F1 SINE Alu 54 141 -8 7 1601 641 271 25 54 chr4 133214098 133214270 -22415850 - B3A SINE B2 0 198 32 7 1601 1588 136 82 41 chr4 133214270 133214448 -22415672 - RMER17C LTR ERVK -2 408 210 7 1601 1401 78 16 5 chr4 133214448 133214641 -22415479 + B2_Mm2 SINE B2 1 195 0 7 1601 1588 136 82 41 chr4 133214641 133214854 -22415266 - RMER17C LTR ERVK -201 209 2 7 1601 641 271 25 54 chr4 133214854 133214884 -22415236 - B3A SINE B2 -167 31 2 7 1601 280 220 0 48 chr4 133214991 133215053 -22415067 - B3A SINE B2 -138 60 2 7 1601 180 0 0 0 chr4 133215054 133215074 -22415046 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 7 1601 730 144 0 8 chr4 133215074 133215200 -22414920 - B1_Mur2 SINE Alu -13 136 12 7 1601 264 30 0 0 chr4 133215511 133215544 -22414576 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1601 197 251 149 43 chr4 133217208 133217351 -22412769 - MIRc SINE MIR -75 193 34 7 1601 494 183 21 41 chr4 133217435 133217532 -22412588 + B1_Mur3 SINE Alu 44 138 -11 7 1601 1415 43 48 5 chr4 133217653 133217840 -22412280 + B2_Mm2 SINE B2 1 195 0 7 1601 604 167 18 148 chr4 133217988 133218157 -22411963 + B1_Mus1 SINE Alu 2 148 0 7 1601 1650 152 121 30 chr4 133219425 133219633 -22410487 - RMER10B LTR ERVL 0 398 197 7 1601 180 0 0 0 chr4 133219633 133219653 -22410467 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 7 1601 1650 152 121 30 chr4 133219653 133219809 -22410311 - RMER10B LTR ERVL -202 196 2 7 1601 226 254 84 0 chr4 133219901 133219972 -22410148 - ID_B1 SINE B4 -1 223 147 7 1601 1150 54 0 0 chr4 133219990 133220137 -22409983 - B1_Mus2 SINE Alu 0 147 1 7 1601 288 261 341 18 chr4 133220143 133220310 -22409810 - B4A SINE B4 -70 222 2 7 1601 203 351 142 23 chr4 133221640 133221785 -22408335 - L2 LINE L2 -788 2631 2474 7 1601 828 80 0 0 chr4 133221785 133221898 -22408222 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 1601 203 351 142 23 chr4 133221898 133222105 -22408015 - L2 LINE L2 -946 2473 2237 7 1601 324 216 0 53 chr4 133222170 133222275 -22407845 + B1_Mur3 SINE Alu 1 98 -22 7 1601 315 299 244 15 chr4 133222276 133222538 -22407582 - L2 LINE L2 -1254 2165 1844 7 1601 818 212 87 31 chr4 133222905 133223100 -22407020 + B3 SINE B2 5 210 -6 7 1601 1178 42 21 0 chr4 133223119 133223263 -22406857 + B1_Mus1 SINE Alu 1 147 -1 7 1601 22 0 0 0 chr4 133223625 133223647 -22406473 + AT_rich Low_complexity Low_complexity 1 22 0 7 1601 364 350 211 21 chr4 133223733 133224430 -22405690 - L2 LINE L2 -1989 1430 602 7 1601 193 256 0 0 chr4 133224444 133224487 -22405633 + L2c LINE L2 3261 3303 -84 7 1601 185 342 51 34 chr4 133226063 133226181 -22403939 + MIRc SINE MIR 81 200 -68 7 1601 301 242 0 0 chr4 133227799 133227861 -22402259 - MIRc SINE MIR -111 157 96 7 1601 23 68 0 0 chr4 133228541 133228585 -22401535 + GC_rich Low_complexity Low_complexity 1 44 0 7 1601 180 121 61 0 chr4 133228867 133228900 -22401220 + L2b LINE L2 3309 3343 -32 7 1601 300 53 0 0 chr4 133229143 133229181 -22400939 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1601 204 67 0 0 chr4 133229489 133229519 -22400601 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1601 189 107 0 0 chr4 133230101 133230129 -22399991 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1601 312 250 0 14 chr4 133230807 133230876 -22399244 - MIRm SINE MIR -118 158 91 7 1601 1120 101 0 0 chr4 133230939 133231087 -22399033 + B1_Mus1 SINE Alu 1 148 0 7 1601 522 190 20 10 chr4 133231128 133231229 -22398891 - PB1D9 SINE Alu -17 103 2 7 1601 605 202 146 8 chr4 133232793 133232923 -22397197 - B3 SINE B2 -14 202 55 7 1601 270 361 83 0 chr4 133232929 133233001 -22397119 + B3A SINE B2 61 138 -60 7 1601 281 160 80 0 chr4 133233057 133233107 -22397013 + ID_B1 SINE B4 163 216 -8 7 1601 384 292 21 97 chr4 133233154 133233298 -22396822 - RSINE1 SINE B4 -31 134 2 7 1601 313 281 80 0 chr4 133233571 133233673 -22396447 - B1_Mur2 SINE Alu -2 118 3 7 1601 513 230 60 80 chr4 133233885 133234036 -22396084 + B1_Mur2 SINE Alu 2 149 0 7 1601 21 57 0 0 chr4 133234132 133234167 -22395953 + AT_rich Low_complexity Low_complexity 1 35 0 7 1601 444 183 212 25 chr4 133234349 133234467 -22395653 - B1_Mur2 SINE Alu -8 141 2 7 1601 385 272 96 101 chr4 133234527 133234715 -22395405 - B3 SINE B2 -27 189 3 7 1601 243 103 0 0 chr4 133235835 133235874 -22394246 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1601 202 342 0 0 chr4 133236034 133236107 -22394013 + GA-rich Low_complexity Low_complexity 3 75 0 7 1601 207 279 0 0 chr4 133238044 133238087 -22392033 + polypyrimidine Low_complexity Low_complexity 1 43 0 7 1601 1097 30 8 0 chr4 133238741 133238874 -22391246 + B1_Mus2 SINE Alu 14 147 0 7 1601 248 87 28 42 chr4 133238878 133238950 -22391170 + A-rich Low_complexity Low_complexity 2 72 0 7 1601 515 237 88 7 chr4 133238959 133239095 -22391025 + B1_Mur1 SINE Alu 3 149 0 7 1601 705 283 18 32 chr4 133239300 133239519 -22390601 - ID_B1 SINE B4 -4 220 5 7 1601 209 111 0 27 chr4 133239546 133239583 -22390537 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 7 1601 600 182 82 22 chr4 133239583 133239718 -22390402 + B1_Mus1 SINE Alu 1 143 -5 7 1601 231 309 130 9 chr4 133239745 133239853 -22390267 - RSINE1 SINE B4 -36 129 9 7 1601 288 77 0 0 chr4 133242321 133242360 -22387760 + (CTG)n Simple_repeat Simple_repeat 3 41 0 7 1601 216 279 62 62 chr4 133242916 133242981 -22387139 + ID4_ SINE ID 13 77 -6 7 1601 180 179 0 0 chr4 133242983 133243022 -22387098 + GA-rich Low_complexity Low_complexity 4 42 0 7 1601 278 208 63 25 chr4 133243722 133243801 -22386319 - B1F1 SINE Alu -54 95 14 7 1601 1214 127 5 11 chr4 133245388 133245579 -22384541 - B2_Mm1t SINE B2 -1 192 3 7 1601 618 247 24 60 chr4 133247571 133247739 -22382381 - B3 SINE B2 -54 162 1 7 1601 629 221 44 0 chr4 133247747 133247883 -22382237 - B1_Mur4 SINE Alu 0 150 9 7 1601 774 175 0 28 chr4 133247927 133248068 -22382052 + B1_Mur1 SINE Alu 3 139 -10 7 1601 678 188 14 43 chr4 133248506 133248645 -22381475 - B1_Mur3 SINE Alu -14 135 1 7 1601 539 176 158 16 chr4 133250909 133251036 -22379084 - B1_Mus1 SINE Alu 0 148 4 7 1601 201 139 0 0 chr4 133251587 133251630 -22378490 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1601 349 273 55 0 chr4 133252221 133252331 -22377789 + PB1D10 SINE Alu 2 117 0 7 1601 652 208 88 44 chr4 133252839 133253020 -22377100 - B3 SINE B2 -4 191 3 7 1601 273 57 0 0 chr4 133253364 133253399 -22376721 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1601 450 0 0 0 chr4 133253399 133253449 -22376671 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1601 321 291 25 0 chr4 133253470 133253549 -22376571 - ID_B1 SINE B4 -18 206 126 7 1601 661 316 98 87 chr4 133253622 133253817 -22376303 - B4 SINE B4 -12 280 97 7 1601 1159 70 0 0 chr4 133253817 133253959 -22376161 - B1_Mm SINE Alu -5 142 1 7 1601 661 316 98 87 chr4 133253959 133254040 -22376080 - B4 SINE B4 -196 96 1 7 1601 1381 50 70 32 chr4 133254077 133254264 -22375856 + B2_Mm2 SINE B2 2 195 0 7 1601 450 0 0 0 chr4 133254594 133254644 -22375476 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 7 1601 329 304 0 80 chr4 133255079 133255179 -22374941 - B1F2 SINE Alu -57 92 1 7 1601 357 189 51 63 chr4 133255197 133255276 -22374844 - B1_Mur4 SINE Alu 0 150 73 7 1601 233 258 125 62 chr4 133255283 133255442 -22374678 - MIRb SINE MIR -76 192 39 7 1601 1177 49 165 0 chr4 133255578 133255742 -22374378 - B2_Mm2 SINE B2 -4 191 1 7 1601 908 153 14 7 chr4 133255874 133256019 -22374101 + B1_Mus1 SINE Alu 2 147 -1 7 1601 623 308 62 18 chr4 133256068 133256293 -22373827 + B4A SINE B4 41 275 -17 7 1601 415 238 30 31 chr4 133257717 133257833 -22372287 + PB1D10 SINE Alu 6 111 -6 7 1601 248 218 95 71 chr4 133258599 133258683 -22371437 - B1F SINE Alu -21 128 43 7 1601 294 29 0 0 chr4 133258686 133258721 -22371399 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 8 1601 22 35 0 0 chr4 133259136 133259165 -22370955 + AT_rich Low_complexity Low_complexity 1 29 0 8 1601 458 92 469 0 chr4 133259666 133259764 -22370356 - B1_Mus1 SINE Alu -4 144 1 8 1601 625 181 56 28 chr4 133261698 133261840 -22368280 - B1_Mus1 SINE Alu -2 146 1 8 1601 541 217 33 80 chr4 133262328 133262478 -22367642 + B1_Mur1 SINE Alu 7 149 0 8 1601 454 206 205 6 chr4 133264026 133264192 -22365928 + Lx9 LINE L1 7223 7421 -223 8 1601 767 176 66 38 chr4 133264199 133264382 -22365738 + B2_Mm2 SINE B2 1 188 -7 8 1601 564 163 96 16 chr4 133264401 133264526 -22365594 + B1_Mur4 SINE Alu 15 149 -1 8 1601 1472 199 152 26 chr4 133264609 133264996 -22365124 + RMER10A LTR ERVL 7 442 0 8 1601 490 158 73 24 chr4 133265004 133265127 -22364993 + Lx9 LINE L1 7508 7636 -8 8 1601 218 290 34 14 chr4 133265127 133265274 -22364846 + GA-rich Low_complexity Low_complexity 2 151 0 8 1601 276 257 57 0 chr4 133265855 133265925 -22364195 + ID_B1 SINE B4 80 153 -71 8 1601 249 284 95 0 chr4 133265862 133265936 -22364184 + B1F SINE Alu 6 86 -63 8 1601 702 280 15 60 chr4 133265939 133266140 -22363980 + B3 SINE B2 15 206 -10 8 1601 866 115 0 0 chr4 133266145 133266267 -22363853 + B2_Mm2 SINE B2 1 122 -73 8 1601 732 163 293 6 chr4 133266319 133266486 -22363634 + B3 SINE B2 2 216 0 8 1601 616 200 63 21 chr4 133266765 133266908 -22363212 + B1_Mur3 SINE Alu 1 149 0 8 1601 246 244 101 13 chr4 133267204 133267283 -22362837 + B1F2 SINE Alu 7 92 -57 8 1601 242 158 175 0 chr4 133268200 133268257 -22361863 - B1_Mur4 SINE Alu -64 86 20 8 1601 700 122 35 0 chr4 133268328 133268443 -22361677 - B1_Mur4 SINE Alu 0 150 32 8 1601 296 337 19 29 chr4 133268442 133268546 -22361574 - PB1D10 SINE Alu -4 113 11 8 1601 242 270 111 11 chr4 133268914 133269004 -22361116 + PB1D7 SINE Alu 18 116 -4 8 1601 477 0 0 0 chr4 133269152 133269205 -22360915 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1601 273 333 69 20 chr4 133269222 133269323 -22360797 - RSINE1 SINE B4 -24 141 36 8 1601 426 252 33 25 chr4 133269557 133269679 -22360441 - B4 SINE B4 -22 270 148 8 1601 846 160 0 0 chr4 133269874 133270005 -22360115 - B1_Mus1 SINE Alu -17 131 1 8 1601 291 381 81 6 chr4 133270136 133270297 -22359823 + MER5A DNA MER1_type 1 173 -16 8 1601 298 232 80 50 chr4 133270724 133270824 -22359296 + B1F SINE Alu 47 149 0 8 1601 673 209 0 22 chr4 133270842 133270979 -22359141 + B1_Mus1 SINE Alu 2 135 -13 8 1601 548 271 14 21 chr4 133270979 133271135 -22358985 + B3 SINE B2 20 168 -27 8 1601 904 234 29 19 chr4 133271714 133271923 -22358197 + B3 SINE B2 2 212 -4 8 1601 642 230 99 28 chr4 133272120 133272407 -22357713 + MTD LTR MaLR 2 419 0 8 1601 209 189 0 0 chr4 133272592 133272629 -22357491 + A-rich Low_complexity Low_complexity 2 38 0 8 1601 531 65 402 0 chr4 133272748 133272840 -22357280 - B1_Mus1 SINE Alu -18 130 2 8 1601 369 299 60 45 chr4 133273182 133273315 -22356805 + RSINE1 SINE B4 2 136 -29 8 1601 352 167 57 45 chr4 133273819 133273907 -22356213 - B1F SINE Alu -51 98 10 8 1601 850 249 19 14 chr4 133274681 133274889 -22355231 + B3 SINE B2 1 209 -7 8 1601 453 252 37 0 chr4 133275611 133275718 -22354402 + PB1D9 SINE Alu 10 120 0 8 1601 341 289 31 55 chr4 133275790 133275918 -22354202 + B3 SINE B2 68 192 -24 8 1601 494 292 3 5 chr4 133276045 133276174 -22353946 + PB1D10 SINE Alu 1 127 -20 8 1601 25 0 0 0 chr4 133277271 133277296 -22352824 + AT_rich Low_complexity Low_complexity 1 25 0 8 1601 1278 104 16 16 chr4 133277303 133277488 -22352632 + B2_Mm2 SINE B2 2 186 -9 8 1601 289 309 133 41 chr4 133277495 133277691 -22352429 + ID_B1 SINE B4 1 214 -10 8 1601 187 31 62 0 chr4 133277712 133277744 -22352376 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 8 1601 850 160 23 0 chr4 133277793 133277924 -22352196 + B1_Mur4 SINE Alu 1 134 -16 8 1601 271 265 0 29 chr4 133277925 133277995 -22352125 + GA-rich Low_complexity Low_complexity 1 68 0 8 1601 348 259 12 0 chr4 133278236 133278317 -22351803 + ID4_ SINE ID 2 83 0 8 1601 1060 70 42 14 chr4 133279602 133279746 -22350374 + B1_Mus1 SINE Alu 1 148 0 8 1601 25 31 0 0 chr4 133279751 133279783 -22350337 + AT_rich Low_complexity Low_complexity 1 32 0 8 1601 483 217 34 17 chr4 133279808 133279925 -22350195 + PB1D9 SINE Alu 1 119 -1 8 1601 358 265 174 67 chr4 133279979 133280120 -22350000 + B3A SINE B2 2 167 -31 8 1601 423 0 0 0 chr4 133280120 133280167 -22349953 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1601 358 265 174 67 chr4 133280167 133280187 -22349933 + B3A SINE B2 168 185 -13 8 1601 954 68 96 15 chr4 133280187 133280322 -22349798 + B1_Mm SINE Alu 2 147 0 8 1601 358 265 174 67 chr4 133280322 133280337 -22349783 + B3A SINE B2 186 198 0 8 1601 287 267 0 146 chr4 133280374 133280497 -22349623 + ID_B1 SINE B4 118 222 -2 8 1601 456 289 92 43 chr4 133280977 133281140 -22348980 - MER5A DNA MER1_type -18 171 1 8 1601 426 78 162 38 chr4 133281140 133281211 -22348909 + B1_Mur4 SINE Alu 67 147 -3 8 1601 235 267 0 91 chr4 133281216 133281282 -22348838 + ID2 SINE ID 2 61 -22 8 1601 276 255 0 0 chr4 133281456 133281507 -22348613 + PB1 SINE Alu 4 54 -73 8 1601 932 126 15 0 chr4 133282037 133282172 -22347948 + B1_Mus2 SINE Alu 1 137 -10 8 1601 357 296 0 24 chr4 133282285 133282368 -22347752 - PB1D10 SINE Alu -19 98 18 8 1601 785 243 89 5 chr4 133282373 133282563 -22347557 - B3 SINE B2 -10 206 1 8 1601 216 369 0 0 chr4 133282572 133282637 -22347483 - B1F1 SINE Alu -83 66 2 8 1601 687 307 18 23 chr4 133282675 133282895 -22347225 - ID_B1 SINE B4 -4 220 2 8 1601 269 233 33 0 chr4 133282897 133282957 -22347163 + MER3 DNA MER1_type 147 208 -1 8 1601 587 244 49 0 chr4 133283159 133283282 -22346838 + B1F SINE Alu 1 129 -20 8 1601 274 254 0 73 chr4 133283404 133283472 -22346648 - PB1 SINE Alu 0 127 65 8 1601 350 165 170 32 chr4 133286377 133286471 -22343649 - PB1 SINE Alu 0 127 21 8 1601 556 207 22 30 chr4 133287460 133287593 -22342527 + B1_Mur4 SINE Alu 2 143 -7 8 1601 450 73 0 0 chr4 133287826 133287894 -22342226 + L1_Mus2 LINE L1 6499 6566 0 8 1601 364 216 11 85 chr4 133288126 133288232 -22341888 + PB1D9 SINE Alu 5 120 0 8 1601 283 208 34 135 chr4 133288332 133288421 -22341699 + PB1D9 SINE Alu 33 112 -8 8 1601 255 301 14 14 chr4 133288622 133288696 -22341424 + B3A SINE B2 2 75 -123 8 1601 237 288 68 0 chr4 133288745 133288818 -22341302 + B4A SINE B4 172 249 -43 8 1601 315 343 50 38 chr4 133289072 133289311 -22340809 - MER44A DNA MER2_type -95 244 3 8 1601 350 236 79 31 chr4 133289544 133289671 -22340449 + ID_B1 SINE B4 92 224 0 8 1601 356 250 102 51 chr4 133290139 133290257 -22339863 + PB1 SINE Alu 1 124 -3 8 1601 373 283 66 66 chr4 133290290 133290396 -22339724 + RSINE1 SINE B4 29 134 -31 8 1601 282 268 0 32 chr4 133291041 133291118 -22339002 + B1F SINE Alu 44 139 -10 8 1601 468 0 0 0 chr4 133291118 133291170 -22338950 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1601 205 266 72 31 chr4 133291263 133291360 -22338760 + L2a LINE L2 3291 3391 -35 8 1601 183 104 41 20 chr4 133291750 133291799 -22338321 + A-rich Low_complexity Low_complexity 1 50 0 8 1601 1091 72 0 7 chr4 133292169 133292308 -22337812 + B1_Mus2 SINE Alu 1 138 -9 8 1601 282 29 0 0 chr4 133292308 133292343 -22337777 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1601 781 160 0 0 chr4 133292565 133292684 -22337436 + B1_Mus1 SINE Alu 25 143 -5 8 1601 862 99 47 0 chr4 133292685 133292856 -22337264 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 8 1601 959 77 35 6 chr4 133292888 133293057 -22337063 + (GAGAA)n Simple_repeat Simple_repeat 5 178 0 8 1601 350 304 78 10 chr4 133294320 133294335 -22335785 - PB1D10 SINE Alu -5 112 3 8 1601 357 299 23 11 chr4 133294335 133294423 -22335697 - ID_B1 SINE B4 -52 172 84 8 1601 237 322 101 20 chr4 133295202 133295351 -22334769 + RSINE1 SINE B4 5 165 0 8 1601 708 201 125 11 chr4 133295943 133296119 -22334001 + B3A SINE B2 2 197 -1 8 1601 1239 34 7 0 chr4 133296187 133296333 -22333787 - B1_Mus1 SINE Alu -1 147 1 8 1601 1238 48 0 7 chr4 133296414 133296560 -22333560 + B1_Mus2 SINE Alu 2 146 -1 8 1601 193 53 79 0 chr4 133296969 133297007 -22333113 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 8 1601 595 278 26 88 chr4 133298098 133298291 -22331829 + B3A SINE B2 15 195 -3 8 1601 766 136 96 0 chr4 133298448 133298573 -22331547 - B1_Mus1 SINE Alu -7 141 5 8 1601 367 283 21 112 chr4 133298621 133298764 -22331356 + RSINE1 SINE B4 1 130 -35 8 1601 411 277 141 24 chr4 133299186 133299356 -22330764 + B3A SINE B2 9 198 0 8 1601 581 191 98 15 chr4 133299793 133299926 -22330194 - B1_Mur3 SINE Alu -5 144 1 8 1601 266 198 92 191 chr4 133300060 133300191 -22329929 - PB1 SINE Alu -9 118 1 8 200 898 37 0 0 chr4 133300208 133300317 -22329803 - B1_Mus1 SINE Alu 0 148 40 8 1602 384 206 83 64 chr4 133300243 133300352 -22329768 - MT2B LTR ERVL -337 264 154 8 1602 540 217 28 0 chr4 133300763 133300869 -22329251 - PB1D9 SINE Alu -11 109 1 8 1602 931 32 187 0 chr4 133300911 133301034 -22329086 + B1_Mm SINE Alu 1 146 -1 9 1602 1037 132 48 0 chr4 133301120 133301286 -22328834 + B2_Mm2 SINE B2 3 176 -19 9 1602 1207 61 0 0 chr4 133301442 133301589 -22328531 + B1_Mus2 SINE Alu 1 147 0 9 1602 23 0 0 0 chr4 133301590 133301613 -22328507 + AT_rich Low_complexity Low_complexity 1 23 0 9 1602 504 0 0 0 chr4 133302979 133303035 -22327085 + (TC)n Simple_repeat Simple_repeat 2 57 0 9 1602 390 21 0 0 chr4 133303037 133303084 -22327036 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1602 802 36 227 0 chr4 133303130 133303240 -22326880 + B1_Mus2 SINE Alu 2 136 -11 9 1602 197 33 33 0 chr4 133303240 133303270 -22326850 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1602 1111 79 0 0 chr4 133303436 133303575 -22326545 + B1_Mus1 SINE Alu 1 139 -9 9 1602 483 0 29 15 chr4 133303575 133303643 -22326477 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 9 1602 361 252 18 80 chr4 133303735 133303847 -22326273 - PB1D10 SINE Alu -3 114 10 9 1602 295 267 0 135 chr4 133303851 133303955 -22326165 - ID_B1 SINE B4 -1 223 134 9 1602 325 267 0 113 chr4 133303862 133303959 -22326161 - B1F SINE Alu -12 137 52 9 1602 674 157 8 17 chr4 133304992 133305109 -22325011 - B1_Mur1 SINE Alu -1 148 33 9 1602 282 296 0 110 chr4 133305211 133305302 -22324818 + ID SINE ID 5 85 -139 9 1602 562 222 42 105 chr4 133305319 133305510 -22324610 + B3 SINE B2 38 216 0 9 1602 331 313 102 25 chr4 133305495 133305515 -22324605 + ID_B1 SINE B4 64 92 -132 9 1602 247 383 0 27 chr4 133305515 133305625 -22324495 + PB1D10 SINE Alu 4 110 -7 9 1602 360 0 0 0 chr4 133305872 133305912 -22324208 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1602 330 226 26 121 chr4 133306099 133306215 -22323905 + PB1D9 SINE Alu 13 117 -3 9 1602 243 61 0 0 chr4 133308477 133308510 -22321610 + (CCG)n Simple_repeat Simple_repeat 2 34 0 9 1602 23 0 0 0 chr4 133308779 133308802 -22321318 + GC_rich Low_complexity Low_complexity 1 23 0 9 1602 246 128 0 0 chr4 133309131 133309170 -22320950 + (CCG)n Simple_repeat Simple_repeat 1 39 0 9 1602 207 114 0 0 chr4 133309254 133309289 -22320831 + (CCG)n Simple_repeat Simple_repeat 2 36 0 9 1602 22 94 0 0 chr4 133309587 133309651 -22320469 + GC_rich Low_complexity Low_complexity 1 64 0 9 1602 245 176 0 0 chr4 133309711 133309762 -22320358 + (CGG)n Simple_repeat Simple_repeat 2 52 0 9 1602 300 118 14 29 chr4 133309913 133309983 -22320137 + GA-rich Low_complexity Low_complexity 2 70 0 9 1602 227 106 0 41 chr4 133309988 133310037 -22320083 + (CGGG)n Simple_repeat Simple_repeat 2 48 0 9 1602 249 163 0 0 chr4 133310125 133310174 -22319946 + (CGGG)n Simple_repeat Simple_repeat 3 51 0 9 1602 447 229 47 121 chr4 133313940 133313955 -22316165 + B4A SINE B4 78 81 -211 9 1602 1075 62 7 52 chr4 133313955 133314109 -22316011 + B1_Mus1 SINE Alu 2 148 0 9 1602 272 85 340 60 chr4 133314358 133314373 -22315747 - BC1_Mm scRNA scRNA -23 129 115 9 1602 1048 103 7 33 chr4 133314373 133314523 -22315597 - B1_Mus2 SINE Alu 0 147 2 9 1602 272 85 340 60 chr4 133314523 133314607 -22315513 - BC1_Mm scRNA scRNA -38 114 2 9 1602 207 0 0 0 chr4 133314667 133314690 -22315430 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1602 486 219 167 8 chr4 133314750 133314870 -22315250 + B1_Mus2 SINE Alu 1 139 -8 9 1602 272 325 16 0 chr4 133315796 133315922 -22314198 + (CA)n Simple_repeat Simple_repeat 1 128 0 9 1602 231 211 0 0 chr4 133315939 133316029 -22314091 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1602 250 254 0 17 chr4 133316138 133316198 -22313922 - ID4_ SINE ID -12 71 13 9 1602 288 53 0 0 chr4 133316330 133316368 -22313752 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1602 1315 14 0 0 chr4 133316384 133316529 -22313591 + B1_Mm SINE Alu 1 145 -2 9 1602 186 43 0 0 chr4 133316529 133316552 -22313568 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1602 792 197 0 39 chr4 133316564 133316717 -22313403 + B1_Mur2 SINE Alu 3 149 0 9 1602 1073 83 13 46 chr4 133316719 133316871 -22313249 + B1_Mm SINE Alu 1 147 0 9 1602 495 0 0 0 chr4 133316976 133317031 -22313089 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1602 317 82 20 0 chr4 133317031 133317080 -22313040 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1602 238 318 0 60 chr4 133317102 133317169 -22312951 - RSINE1 SINE B4 -74 91 29 9 1602 586 0 13 38 chr4 133317397 133317476 -22312644 + B1_Mus2 SINE Alu 71 147 0 9 1602 266 288 225 53 chr4 133317660 133317829 -22312291 + B3A SINE B2 1 198 0 9 1602 620 248 124 0 chr4 133318280 133318433 -22311687 - B3 SINE B2 -3 213 42 9 1602 1305 66 0 0 chr4 133318516 133318744 -22311376 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 9 1602 1506 12 0 0 chr4 133318770 133318942 -22311178 + (GGAGA)n Simple_repeat Simple_repeat 2 173 0 9 1602 809 225 30 18 chr4 133318978 133319175 -22310945 - B3A SINE B2 -9 207 8 9 1602 643 235 15 15 chr4 133319178 133319312 -22310808 - ID_B1 SINE B4 0 224 91 9 1602 354 256 47 0 chr4 133319235 133319321 -22310799 - PB1D7 SINE Alu -30 90 1 9 1602 267 273 61 0 chr4 133319481 133319547 -22310573 + ID4 SINE ID 3 72 -11 9 1602 189 0 0 0 chr4 133319561 133319582 -22310538 + (GA)n Simple_repeat Simple_repeat 1 21 0 9 1602 605 266 144 52 chr4 133319591 133319785 -22310335 + ID_B1 SINE B4 1 212 -12 9 1602 230 0 33 0 chr4 133319788 133319818 -22310302 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 9 1602 1409 88 5 30 chr4 133320199 133320398 -22309722 + B2_Mm2 SINE B2 2 195 0 9 1602 656 188 14 36 chr4 133320674 133320812 -22309308 - B1_Mur3 SINE Alu -13 136 2 9 1602 1233 28 14 0 chr4 133321036 133321180 -22308940 + B1_Mus2 SINE Alu 2 147 0 9 1602 792 122 0 0 chr4 133321189 133321312 -22308808 + (GA)n Simple_repeat Simple_repeat 2 124 0 9 1602 1015 73 64 28 chr4 133321753 133321894 -22308226 + B1_Mm SINE Alu 2 147 0 9 1602 5507 136 39 12 chr4 133321894 133323412 -22306708 + Lx4B LINE L1 4907 6453 -605 9 1602 634 82 0 0 chr4 133323412 133323497 -22306623 + B1_Mus2 SINE Alu 2 86 -61 9 1602 1208 196 58 20 chr4 133323509 133323801 -22306319 + Lx4B LINE L1 6756 7058 0 9 1602 401 239 97 35 chr4 133323815 133323928 -22306192 + B1_Mus2 SINE Alu 28 147 0 9 1602 988 45 97 0 chr4 133323938 133324072 -22306048 + B1_Mus1 SINE Alu 2 148 0 9 1602 809 234 129 0 chr4 133324088 133324287 -22305833 + B4A SINE B4 3 227 -65 9 1602 771 225 70 43 chr4 133324287 133324473 -22305647 + B3 SINE B2 1 191 -25 9 1602 272 161 16 0 chr4 133324536 133324598 -22305522 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1602 335 192 36 54 chr4 133325230 133325322 -22304798 + B1_Mur2 SINE Alu 23 133 -16 9 1602 1037 72 50 0 chr4 133325401 133325540 -22304580 + B1_Mm SINE Alu 2 147 0 9 1602 401 291 0 25 chr4 133325590 133325710 -22304410 + B1F SINE Alu 32 148 -1 9 1602 374 332 79 79 chr4 133325724 133325989 -22304131 + B4 SINE B4 2 270 -22 9 1602 441 0 0 0 chr4 133325989 133326038 -22304082 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1602 374 332 79 79 chr4 133326038 133326063 -22304057 + B4 SINE B4 271 292 0 9 1602 3076 73 10 0 chr4 133326214 133326610 -22303510 - MTB LTR MaLR 0 400 1 9 1602 7344 73 28 76 chr4 133326610 133327764 -22302356 - MTB-int LTR MaLR 0 1098 1 9 1602 717 117 0 10 chr4 133327764 133327868 -22302252 - MTB LTR MaLR 0 400 298 9 1602 1276 143 14 19 chr4 133327805 133328018 -22302102 + MTB LTR MaLR 189 400 0 9 1602 993 99 35 0 chr4 133328105 133328246 -22301874 + B1_Mus2 SINE Alu 2 147 0 9 1602 1043 123 0 0 chr4 133328250 133328396 -22301724 + B1_Mus2 SINE Alu 2 147 0 9 1602 221 111 44 0 chr4 133328726 133328771 -22301349 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 9 1602 269 330 104 0 chr4 133328773 133328879 -22301241 - PB1D10 SINE Alu 0 117 1 9 1602 214 50 24 24 chr4 133328911 133328952 -22301168 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 9 1602 1289 34 0 0 chr4 133328976 133329123 -22300997 + B1_Mm SINE Alu 1 147 0 9 1602 189 0 0 0 chr4 133329123 133329144 -22300976 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1602 438 20 0 0 chr4 133329198 133329249 -22300871 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1602 240 338 100 19 chr4 133329332 133329492 -22300628 - B4 SINE B4 -118 174 2 9 1602 625 212 92 82 chr4 133329520 133329715 -22300405 - B3A SINE B2 0 198 2 9 1602 315 294 29 93 chr4 133329788 133329927 -22300193 - B1F1 SINE Alu -16 133 4 9 1602 309 337 0 0 chr4 133329993 133330079 -22300041 - RSINE1 SINE B4 -21 144 59 9 1602 267 31 0 0 chr4 133330118 133330150 -22299970 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1602 875 178 72 0 chr4 133330183 133330363 -22299757 + B3A SINE B2 2 194 -4 9 1602 283 243 206 41 chr4 133330423 133330569 -22299551 - L1MB7 LINE L1 -114 6070 5901 9 1602 261 57 0 0 chr4 133330916 133330951 -22299169 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1602 470 248 59 8 chr4 133331599 133331717 -22298403 + RSINE1 SINE B4 9 132 -33 9 1602 878 199 0 0 chr4 133331718 133331854 -22298266 - B1_Mus1 SINE Alu -12 136 1 9 1602 384 257 72 18 chr4 133331855 133331966 -22298154 - RSINE1 SINE B4 -46 119 3 9 1602 534 135 71 30 chr4 133331992 133332003 -22298117 - B1_Mur4 SINE Alu -3 147 139 9 1602 919 98 103 22 chr4 133332003 133332016 -22298104 - B1_Mus1 SINE Alu 0 148 138 9 1602 699 12 0 0 chr4 133332016 133332096 -22298024 + (TTTTC)n Simple_repeat Simple_repeat 3 82 0 9 1602 919 98 103 22 chr4 133332096 133332218 -22297902 - B1_Mus1 SINE Alu -11 137 2 9 1602 534 135 71 30 chr4 133332218 133332305 -22297815 - B1_Mur4 SINE Alu -12 138 45 9 1602 209 78 37 56 chr4 133332309 133332363 -22297757 + (CCCTG)n Simple_repeat Simple_repeat 3 55 0 9 1602 613 202 44 0 chr4 133332442 133332556 -22297564 + PB1D9 SINE Alu 1 119 -1 9 1602 24 32 0 0 chr4 133332725 133332756 -22297364 + AT_rich Low_complexity Low_complexity 1 31 0 9 1602 723 133 35 9 chr4 133332891 133333005 -22297115 - B1_Mus2 SINE Alu -2 145 29 1 1602 722 199 24 67 chr4 133333005 133333215 -22296905 - B3 SINE B2 -12 204 4 1 1602 433 270 251 6 chr4 133333225 133333404 -22296716 - B4A SINE B4 -67 225 3 1 1602 568 263 22 71 chr4 133333425 133333609 -22296511 - B4A SINE B4 0 292 118 1 1602 275 247 0 38 chr4 133333659 133333739 -22296381 + PB1D7 SINE Alu 2 78 -42 1 1602 199 0 65 0 chr4 133333783 133333814 -22296306 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1602 615 95 0 0 chr4 133333814 133333898 -22296222 - B1_Mus2 SINE Alu -63 84 1 1 1602 1110 108 0 0 chr4 133333916 133334064 -22296056 - B1_Mus1 SINE Alu 0 148 1 1 1602 188 100 0 24 chr4 133334308 133334349 -22295771 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1602 368 194 184 0 chr4 133334351 133334449 -22295671 - PB1D10 SINE Alu -1 116 1 1 1602 409 290 145 0 chr4 133334526 133334657 -22295463 - B3A SINE B2 -10 188 39 1 1602 354 291 84 17 chr4 133334675 133334794 -22295326 - B4A SINE B4 -149 143 17 1 1602 574 179 0 0 chr4 133334814 133334909 -22295211 - B1_Mus2 SINE Alu -1 146 52 1 1602 454 311 61 0 chr4 133334975 133335107 -22295013 + ID_B1 SINE B4 82 221 -3 1 1602 198 143 0 0 chr4 133335356 133335391 -22294729 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1602 234 45 22 43 chr4 133335920 133335966 -22294154 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 1 1602 283 42 0 41 chr4 133335985 133336024 -22294096 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 1 1602 1036 72 65 0 chr4 133336024 133336162 -22293958 - B1_Mus2 SINE Alu 0 147 1 1 1602 283 42 0 41 chr4 133336162 133336171 -22293949 + (TTTTTG)n Simple_repeat Simple_repeat 2 10 0 1 1602 793 181 14 0 chr4 133336172 133336310 -22293810 - B1_Mur4 SINE Alu -8 142 3 1 1602 1147 82 14 0 chr4 133336480 133336627 -22293493 + B1_Mur4 SINE Alu 2 150 0 1 1602 244 368 70 0 chr4 133336731 133336845 -22293275 + MLT1F1 LTR MaLR 307 428 -141 1 1602 229 292 77 22 chr4 133337040 133337131 -22292989 + ORR1E LTR MaLR 251 346 -13 1 1602 285 227 270 66 chr4 133337106 133337243 -22292877 + MLT1F1 LTR MaLR 382 546 -23 1 1602 561 24 24 24 chr4 133337264 133337348 -22292772 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 1 1602 1562 47 0 40 chr4 133337362 133337561 -22292559 + B2_Mm1a SINE B2 2 192 -1 1 1602 933 134 0 0 chr4 133337567 133337701 -22292419 - B1_Mur4 SINE Alu -12 138 5 1 1602 375 215 43 11 chr4 133337703 133337797 -22292323 - ID_B1 SINE B4 -73 151 55 1 1602 606 151 0 0 chr4 133337803 133337896 -22292224 + B1_Mur2 SINE Alu 57 149 0 1 1602 487 290 0 0 chr4 133337992 133338099 -22292021 - PB1D10 SINE Alu -2 115 9 1 1602 885 255 26 65 chr4 133338136 133338272 -22291848 + MTD LTR MaLR 4 135 -284 1 1602 1404 60 11 16 chr4 133338272 133338457 -22291663 + B2_Mm1t SINE B2 3 186 -7 1 1602 885 255 26 65 chr4 133338457 133338539 -22291581 + MTD LTR MaLR 136 213 -206 1 1602 1194 82 6 0 chr4 133338539 133338698 -22291422 + B2_Mm1t SINE B2 1 160 -33 1 1602 531 0 0 0 chr4 133338698 133338757 -22291363 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1 1602 675 0 0 0 chr4 133338759 133338834 -22291286 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 1 1602 1174 135 0 27 chr4 133338834 133338854 -22291266 + B2_Mm2 SINE B2 160 178 -17 1 1602 441 235 176 0 chr4 133338854 133338997 -22291123 + MTD LTR MaLR 198 419 0 1 1602 361 198 97 68 chr4 133339151 133339254 -22290866 + PB1D9 SINE Alu 2 107 -13 1 1602 529 275 33 8 chr4 133339336 133339457 -22290663 + B4A SINE B4 2 125 -167 1 1602 379 261 11 0 chr4 133339888 133339973 -22290147 + B4 SINE B4 136 221 -71 1 1602 1732 136 12 173 chr4 133339973 133340147 -22289973 + RLTR15 LTR ERVK 1 160 -199 1 1602 1293 28 0 0 chr4 133340147 133340292 -22289828 + B1_Mm SINE Alu 1 145 -2 1 1602 1732 136 12 173 chr4 133340292 133340545 -22289575 + RLTR15 LTR ERVK 161 359 0 1 1602 180 0 0 0 chr4 133340701 133340721 -22289399 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1602 283 246 0 0 chr4 133340725 133340782 -22289338 + ID_B1 SINE B4 90 146 -78 1 1602 180 0 0 0 chr4 133340782 133340802 -22289318 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1602 351 0 0 0 chr4 133340811 133340850 -22289270 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 1602 951 106 71 0 chr4 133340852 133340993 -22289127 - B2_Mm1t SINE B2 -41 152 2 1 1602 24 0 0 0 chr4 133341043 133341067 -22289053 + GC_rich Low_complexity Low_complexity 1 24 0 1 1602 296 197 29 57 chr4 133341369 133341439 -22288681 + ID_B1 SINE B4 157 224 0 1 1602 522 339 58 32 chr4 133341470 133341621 -22288499 + B4 SINE B4 3 158 -134 1 1602 750 191 6 14 chr4 133341621 133341774 -22288346 + B1_Mur4 SINE Alu 2 148 0 1 1602 522 295 26 108 chr4 133341653 133341847 -22288273 + B4 SINE B4 111 288 -4 1 1602 234 0 0 0 chr4 133341882 133341908 -22288212 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1602 2644 91 103 19 chr4 133341978 133342394 -22287726 - RLTR11B LTR ERVK -2 451 1 1 1602 1444 207 48 40 chr4 133342403 133342781 -22287339 - MYSERV-int LTR ERVK -8 6542 6162 1 1602 1120 88 0 7 chr4 133342783 133342931 -22287189 + B1_Mus1 SINE Alu 2 148 0 1 1602 33 25 0 0 chr4 133342931 133342971 -22287149 + AT_rich Low_complexity Low_complexity 1 40 0 1 1602 466 251 36 16 chr4 133342977 133343116 -22287004 + PB1D7 SINE Alu 7 149 0 1 1602 238 215 0 15 chr4 133343170 133343236 -22286884 + T-rich Low_complexity Low_complexity 2 66 0 1 1602 970 124 14 7 chr4 133343240 133343386 -22286734 - B1_Mus1 SINE Alu -1 147 1 1 1602 326 219 122 37 chr4 133343396 133343515 -22286605 - B1F SINE Alu -9 140 12 1 1602 444 294 98 0 chr4 133343867 133344010 -22286110 - ID_B1 SINE B4 0 224 68 1 1602 225 0 0 0 chr4 133344353 133344378 -22285742 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1602 1067 89 0 0 chr4 133344378 133344513 -22285607 - B1_Mus2 SINE Alu -11 136 2 1 1602 563 300 19 6 chr4 133344638 133344799 -22285321 + RSINE1 SINE B4 1 163 -2 1 1602 937 129 7 26 chr4 133344821 133344972 -22285148 - B1_Mur3 SINE Alu 0 149 2 1 1602 457 140 188 31 chr4 133345002 133345098 -22285022 - PB1D10 SINE Alu -1 116 6 1 1602 219 308 15 15 chr4 133345048 133345114 -22285006 - B4A SINE B4 -149 143 78 1 1602 910 133 15 0 chr4 133345329 133345464 -22284656 + B1_Mus2 SINE Alu 5 141 -6 1 1602 264 122 0 0 chr4 133345467 133345508 -22284612 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1602 195 312 51 125 chr4 133345607 133345783 -22284337 - L2a LINE L2 -13 3413 3251 1 1602 359 300 0 20 chr4 133345827 133345929 -22284191 - ID_B1 SINE B4 -11 213 114 1 1602 330 297 50 19 chr4 133345932 133346093 -22284027 - L2a LINE L2 -1360 2059 1894 1 1602 217 339 0 0 chr4 133346096 133346152 -22283968 + PB1D7 SINE Alu 49 104 -16 1 1602 1227 47 0 0 chr4 133346154 133346302 -22283818 + B1_Mus1 SINE Alu 1 148 0 1 1602 283 341 16 25 chr4 133346345 133346408 -22283712 + ID SINE ID 27 81 -143 1 1602 347 244 37 0 chr4 133346408 133346490 -22283630 + B1F1 SINE Alu 1 85 -64 1 1602 411 209 286 7 chr4 133346491 133346645 -22283475 - MTD LTR MaLR 0 419 223 1 1602 917 277 37 186 chr4 133346735 133347135 -22282985 + RLTR12B LTR ERVK 47 414 -114 1 1602 1284 27 0 0 chr4 133347135 133347282 -22282838 + B1_Mus2 SINE Alu 1 147 0 1 1602 917 256 24 115 chr4 133347282 133347444 -22282676 + RLTR12B LTR ERVK 389 514 -14 1 1602 938 218 80 5 chr4 133347466 133347678 -22282442 - MTD LTR MaLR -191 228 1 1 1602 394 261 57 25 chr4 133347793 133347820 -22282300 + B1F SINE Alu 24 149 0 1 1602 485 253 0 0 chr4 133347820 133347915 -22282205 + ID_B1 SINE B4 130 224 0 1 1602 469 323 16 0 chr4 133348002 133348129 -22281991 + RSINE1 SINE B4 30 158 -7 1 1602 558 167 139 0 chr4 133348161 133348269 -22281851 + B1_Mur3 SINE Alu 27 149 0 1 1602 536 253 95 58 chr4 133348305 133348494 -22281626 + B3A SINE B2 1 196 -2 1 1602 739 282 48 26 chr4 133348585 133348814 -22281306 + B4A SINE B4 1 234 -58 1 1602 714 143 53 0 chr4 133348819 133348952 -22281168 + B1_Mur4 SINE Alu 9 148 -2 1 1602 274 324 27 13 chr4 133349037 133349112 -22281008 - BC1_Mm scRNA scRNA -2 81 6 1 1602 444 264 53 23 chr4 133349246 133349378 -22280742 - B1_Mur4 SINE Alu -6 144 9 1 1602 591 214 17 8 chr4 133349495 133349613 -22280507 - B1_Mur3 SINE Alu -2 147 29 1 1602 371 293 82 48 chr4 133349954 133350101 -22280019 + RSINE1 SINE B4 3 154 -11 1 1602 449 268 7 96 chr4 133350181 133350274 -22279846 + ID SINE ID 1 81 -143 1 1602 216 321 0 0 chr4 133350274 133350327 -22279793 + B1F SINE Alu 1 53 -96 1 1602 210 37 0 0 chr4 133350464 133350491 -22279629 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1602 699 58 0 0 chr4 133350491 133350577 -22279543 - B1_Mm SINE Alu -9 138 53 1 1602 227 242 44 29 chr4 133350531 133350582 -22279538 - RLTR25A LTR ERVK -531 572 522 1 1602 987 144 0 0 chr4 133350582 133350728 -22279392 + B1_Mur4 SINE Alu 5 150 0 1 1602 227 242 44 29 chr4 133350728 133350744 -22279376 - RLTR25A LTR ERVK -582 521 505 1 1602 465 19 0 0 chr4 133350820 133350874 -22279246 + (TTAG)n Simple_repeat Simple_repeat 3 56 0 1 1602 571 152 57 0 chr4 133350874 133350979 -22279141 - B1_Mur3 SINE Alu -7 142 32 1 1602 253 268 0 0 chr4 133351154 133351210 -22278910 - L1MEg LINE L1 -5768 316 261 1 1602 381 283 60 95 chr4 133351568 133351736 -22278384 + RSINE1 SINE B4 3 164 -1 1 1602 268 392 0 18 chr4 133351812 133351825 -22278295 + ID_B1 SINE B4 70 176 -48 1 1602 340 316 31 10 chr4 133351825 133351920 -22278200 + B1F1 SINE Alu 1 97 -52 1 1602 640 143 0 0 chr4 133351920 133352011 -22278109 + B3 SINE B2 1 91 -125 1 1602 26 0 0 0 chr4 133352049 133352075 -22278045 + AT_rich Low_complexity Low_complexity 1 26 0 1 1602 404 82 16 0 chr4 133352122 133352183 -22277937 + (TTTTC)n Simple_repeat Simple_repeat 1 62 0 1 1602 309 323 0 77 chr4 133352183 133352225 -22277895 + B4A SINE B4 53 148 -144 1 1602 324 242 0 0 chr4 133352225 133352287 -22277833 + B1_Mur3 SINE Alu 2 63 -86 1 1602 225 261 77 0 chr4 133352566 133352631 -22277489 + MER103 DNA DNA 38 107 -59 1 1602 384 283 35 26 chr4 133352820 133352936 -22277184 - PB1 SINE Alu -8 119 3 1 1602 21 0 0 0 chr4 133352942 133352963 -22277157 + AT_rich Low_complexity Low_complexity 1 21 0 1 1602 1102 124 135 0 chr4 133352966 133353151 -22276969 - B3 SINE B2 -6 210 1 1 1602 264 128 0 0 chr4 133353297 133353336 -22276784 - RSINE1 SINE B4 -116 49 11 1 1602 212 216 59 0 chr4 133353367 133353418 -22276702 + B4A SINE B4 15 68 -224 1 1602 252 0 0 0 chr4 133353501 133353529 -22276591 + (CAAAG)n Simple_repeat Simple_repeat 3 30 0 1 1602 492 104 0 0 chr4 133353567 133353634 -22276486 - U4 snRNA snRNA -78 67 1 1 1602 221 192 0 37 chr4 133353654 133353708 -22276412 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1602 1240 48 0 0 chr4 133353827 133353974 -22276146 + B1_Mus1 SINE Alu 2 148 0 1 1602 297 75 0 0 chr4 133353974 133354014 -22276106 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1602 698 192 13 46 chr4 133354046 133354199 -22275921 - B1_Mus1 SINE Alu 0 148 1 1 1602 730 160 17 20 chr4 133354231 133354382 -22275738 + RLTR9B2 LTR ERVK 238 420 0 1 1602 320 286 12 0 chr4 133354872 133354956 -22275164 + B4A SINE B4 1 85 -207 1 1602 1171 51 0 0 chr4 133354966 133355103 -22275017 + B1_Mus1 SINE Alu 2 138 -10 1 1602 440 331 76 0 chr4 133355153 133355325 -22274795 + B4A SINE B4 106 290 -2 1 1602 183 204 0 0 chr4 133355327 133355371 -22274749 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1602 1099 77 0 7 chr4 133355405 133355548 -22274572 - B1_Mus1 SINE Alu -5 143 2 1 1602 971 159 91 0 chr4 133355615 133355791 -22274329 + B2_Mm2 SINE B2 2 193 -2 1 1602 2143 155 64 34 chr4 133355848 133356256 -22273864 - MTC LTR MaLR 0 421 2 1 1602 235 209 23 0 chr4 133356260 133356303 -22273817 + PB1D10 SINE Alu 65 108 -9 1 1602 1005 74 0 0 chr4 133356370 133356505 -22273615 + (TTCCC)n Simple_repeat Simple_repeat 1 135 0 1 1602 220 315 14 0 chr4 133356505 133356578 -22273542 - BC1_Mm scRNA scRNA -78 74 1 1 1602 241 179 161 0 chr4 133356663 133356719 -22273401 - PB1D7 SINE Alu -39 81 17 1 1602 394 196 2 17 chr4 133356806 133356882 -22273238 - RSINE1 SINE B4 -89 76 1 1 1602 538 257 44 44 chr4 133357055 133357218 -22272902 - ID_B1 SINE B4 -60 232 68 1 1602 854 64 0 0 chr4 133357407 133357516 -22272604 + B1_Mm SINE Alu 38 146 -1 1 1602 795 97 0 0 chr4 133357516 133357630 -22272490 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 1 1602 417 189 0 0 chr4 133357631 133357726 -22272394 + (TG)n Simple_repeat Simple_repeat 1 95 0 1 1602 211 291 47 37 chr4 133357726 133357833 -22272287 - RSINE1 SINE B4 0 165 58 1 1602 240 167 150 25 chr4 133357916 133357996 -22272124 + ID_B1 SINE B4 129 218 -6 1 1602 1537 43 27 0 chr4 133358032 133358220 -22271900 + B2_Mm1a SINE B2 1 193 0 1 1602 186 43 0 0 chr4 133358227 133358250 -22271870 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1602 395 247 62 32 chr4 133358250 133358405 -22271715 + B3 SINE B2 8 215 -1 1 1602 380 223 0 64 chr4 133358496 133358606 -22271514 + B1_Mur1 SINE Alu 43 145 -4 1 1602 487 227 156 0 chr4 133358873 133359001 -22271119 + B1_Mur2 SINE Alu 1 148 -1 1 1602 941 60 0 0 chr4 133359010 133359127 -22270993 + B1_Mus2 SINE Alu 30 146 -1 1 1602 690 119 0 0 chr4 133359129 133359233 -22270887 + (GGA)n Simple_repeat Simple_repeat 3 106 0 1 1602 1247 72 0 6 chr4 133359233 133359414 -22270706 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1602 282 138 0 91 chr4 133359484 133359535 -22270585 + polypyrimidine Low_complexity Low_complexity 33 81 0 1 1602 799 224 7 0 chr4 133359535 133359682 -22270438 - B1_Mur4 SINE Alu 0 150 3 1 1602 282 138 0 91 chr4 133359682 133359718 -22270402 + polypyrimidine Low_complexity Low_complexity 2 32 0 1 1602 581 259 74 0 chr4 133359806 133359941 -22270179 + RSINE1 SINE B4 17 161 -4 1 1602 843 129 15 22 chr4 133359941 133360076 -22270044 + B1_Mus2 SINE Alu 14 147 0 1 1602 239 198 0 36 chr4 133360078 133360162 -22269958 + A-rich Low_complexity Low_complexity 1 81 0 1 1602 745 149 65 36 chr4 133360204 133360343 -22269777 + B1_Mm SINE Alu 5 147 0 1 1602 1243 35 0 0 chr4 133360755 133360899 -22269221 - B1_Mus2 SINE Alu -3 144 1 1 1602 741 281 53 33 chr4 133361139 133361590 -22268530 - L1MC4a LINE L1 -124 7918 7419 1 1602 360 0 0 0 chr4 133361670 133361710 -22268410 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1 1602 734 156 69 23 chr4 133361710 133361841 -22268279 - B1_Mus2 SINE Alu -10 137 1 1 1602 232 103 26 0 chr4 133361843 133361882 -22268238 - B3A SINE B2 -158 40 1 1 1602 1434 69 16 0 chr4 133361908 133362097 -22268023 - B2_Mm1a SINE B2 0 193 2 1 1602 303 284 148 41 chr4 133362124 133362293 -22267827 - L1MC4a LINE L1 -637 7405 7219 1 1602 997 172 22 11 chr4 133362317 133362499 -22267621 - URR1B DNA MER1_type -11 214 31 1 1602 310 212 130 10 chr4 133362510 133362610 -22267510 - L1MC4a LINE L1 -923 7119 7008 1 1602 681 206 7 46 chr4 133362680 133362833 -22267287 + B1_Mur3 SINE Alu 2 148 -1 1 1602 219 348 11 0 chr4 133362958 133363047 -22267073 - B1F SINE Alu -48 101 12 1 1602 692 220 181 0 chr4 133363099 133363276 -22266844 + B3 SINE B2 1 209 -7 1 1602 283 183 83 0 chr4 133363289 133363349 -22266771 + B3 SINE B2 152 216 0 1 1602 291 109 0 0 chr4 133363384 133363430 -22266690 - Charlie4a DNA MER1_type -283 225 180 1 1602 438 53 0 0 chr4 133363430 133363487 -22266633 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1602 403 236 185 19 chr4 133363487 133363595 -22266525 - RSINE1 SINE B4 -36 129 4 1 1602 1175 44 0 0 chr4 133363863 133363999 -22266121 + B1_Mm SINE Alu 1 136 -11 1 1602 26 30 0 0 chr4 133364125 133364158 -22265962 + AT_rich Low_complexity Low_complexity 1 33 0 1 1602 516 58 14 0 chr4 133364166 133364235 -22265885 + B1_Mus2 SINE Alu 78 147 0 1 1602 243 0 0 0 chr4 133364237 133364264 -22265856 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1602 180 0 0 0 chr4 133364408 133364428 -22265692 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1602 1449 52 5 59 chr4 133364573 133364776 -22265344 + B2_Mm1a SINE B2 2 193 0 1 1602 587 225 34 27 chr4 133364828 133364974 -22265146 + B1_Mur2 SINE Alu 1 147 -2 1 1602 296 103 0 17 chr4 133364987 133365046 -22265074 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1602 330 26 0 0 chr4 133365116 133365155 -22264965 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1602 250 389 0 0 chr4 133365279 133365369 -22264751 + PB1D7 SINE Alu 3 92 -28 1 1602 447 73 0 0 chr4 133365393 133365461 -22264659 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1602 212 263 37 62 chr4 133365629 133365710 -22264410 + B4 SINE B4 5 83 -209 1 1602 456 254 240 37 chr4 133365838 133366055 -22264065 - B4 SINE B4 0 292 32 1 1602 1026 118 0 14 chr4 133366086 133366232 -22263888 - B1_Mus1 SINE Alu -1 147 4 1 1602 434 272 107 20 chr4 133366264 133366414 -22263706 - RSINE1 SINE B4 -1 164 2 1 1602 500 302 8 0 chr4 133366436 133366555 -22263565 - B1F SINE Alu -16 133 14 1 1602 230 326 35 119 chr4 133366929 133366979 -22263141 + B4A SINE B4 42 224 -66 1 1602 438 324 20 53 chr4 133366979 133367129 -22262991 + B1F1 SINE Alu 3 147 -2 1 1602 524 254 25 17 chr4 133367257 133367377 -22262743 + B4A SINE B4 109 229 -63 1 1602 550 198 8 59 chr4 133367369 133367487 -22262633 + PB1D9 SINE Alu 8 119 -1 1 1602 372 257 182 9 chr4 133367620 133367730 -22262390 + RSINE1 SINE B4 2 130 -35 1 1602 378 0 0 0 chr4 133367741 133367783 -22262337 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1602 307 206 0 56 chr4 133368043 133368115 -22262005 + PB1D10 SINE Alu 41 108 -9 1 1602 1412 94 11 0 chr4 133368163 133368354 -22261766 + B2_Mm1t SINE B2 1 193 0 1 1602 973 79 62 48 chr4 133368376 133368522 -22261598 + B1_Mus1 SINE Alu 1 148 0 1 1602 700 95 0 19 chr4 133368608 133368715 -22261405 - B1_Mus2 SINE Alu -1 146 42 1 1602 231 36 0 0 chr4 133368736 133368764 -22261356 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1602 223 200 18 0 chr4 133370153 133370208 -22259912 + G-rich Low_complexity Low_complexity 4 59 0 1 1602 188 345 120 34 chr4 133371954 133372071 -22258049 - MIR SINE MIR 0 262 136 1 1602 286 262 131 0 chr4 133372746 133372830 -22257290 + L3 LINE CR1 3893 3987 -502 1 1602 570 205 145 0 chr4 133372955 133373072 -22257048 + B1F2 SINE Alu 6 139 -10 1 1602 193 291 56 44 chr4 133373131 133373221 -22256899 + L3 LINE CR1 4192 4282 -207 1 1602 286 286 13 0 chr4 133373407 133373484 -22256636 - ID4_ SINE ID 0 83 6 1 1602 643 142 9 19 chr4 133373520 133373628 -22256492 + B1_Mur4 SINE Alu 1 107 -43 1 1602 1392 18 0 0 chr4 133373627 133373792 -22256328 + B2_Mm1t SINE B2 27 191 -2 1 1602 288 138 16 49 chr4 133373789 133373850 -22256270 + B1_Mm SINE Alu 89 147 0 1 1602 263 289 96 67 chr4 133373870 133373974 -22256146 - PB1D10 SINE Alu -13 107 1 1 1602 668 203 135 26 chr4 133374210 133374402 -22255718 + B3 SINE B2 2 214 -2 1 1602 31 44 0 0 chr4 133374403 133374448 -22255672 + AT_rich Low_complexity Low_complexity 1 45 0 1 1602 195 42 0 0 chr4 133374502 133374526 -22255594 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1602 1138 63 14 0 chr4 133374526 133374668 -22255452 - B1_Mus2 SINE Alu -2 145 2 1 1602 222 354 0 12 chr4 133374814 133374897 -22255223 + B4 SINE B4 3 84 -208 1 1602 440 276 110 31 chr4 133374908 133375035 -22255085 + B1_Mur2 SINE Alu 2 138 -11 1 1602 23 33 0 0 chr4 133375036 133375066 -22255054 + AT_rich Low_complexity Low_complexity 1 30 0 1 1602 1146 35 0 0 chr4 133375128 133375270 -22254850 - B1_Mus2 SINE Alu 0 147 6 1 1602 279 236 16 8 chr4 133375168 133375296 -22254824 - ORR1B1-int LTR MaLR -755 754 626 1 1602 1198 62 0 0 chr4 133375370 133375515 -22254605 + B1_Mus1 SINE Alu 3 147 -1 1 1602 270 196 0 0 chr4 133375532 133375578 -22254542 - B3 SINE B2 -169 47 2 1 1602 542 254 111 0 chr4 133375574 133375700 -22254420 - ID_B1 SINE B4 -1 223 84 1 1602 198 333 14 28 chr4 133375723 133375794 -22254326 + MIR SINE MIR 117 186 -76 1 1602 675 151 38 53 chr4 133377347 133377480 -22252640 - B1_Mus2 SINE Alu 0 147 17 1 1602 1193 89 6 0 chr4 133377513 133377681 -22252439 + B2_Mm2 SINE B2 25 193 -2 1 1602 775 201 0 0 chr4 133377860 133377994 -22252126 + B1_Mur3 SINE Alu 11 144 -5 1 1602 216 271 0 0 chr4 133377994 133378042 -22252078 + GA-rich Low_complexity Low_complexity 6 53 0 1 1602 477 0 0 0 chr4 133378212 133378265 -22251855 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1602 1223 55 0 0 chr4 133378340 133378485 -22251635 + B1_Mus1 SINE Alu 4 148 0 1 1602 249 159 0 0 chr4 133378487 133378531 -22251589 + GA-rich Low_complexity Low_complexity 2 45 0 1 1602 311 307 29 10 chr4 133378931 133378953 -22251167 + ID_B1 SINE B4 73 176 -48 1 1602 397 188 50 0 chr4 133378953 133379033 -22251087 + B1_Mus2 SINE Alu 13 96 -51 1 1602 222 37 0 0 chr4 133379033 133379060 -22251060 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1602 536 205 9 9 chr4 133379329 133379442 -22250678 + B1F2 SINE Alu 3 115 -34 1 1602 438 208 456 0 chr4 133379445 133379594 -22250526 + ID_B1 SINE B4 3 219 -5 1 1602 1449 75 37 0 chr4 133379612 133379799 -22250321 + B2_Mm2 SINE B2 2 195 0 1 1602 222 265 0 0 chr4 133379857 133379906 -22250214 + B1F SINE Alu 51 99 -50 1 1602 267 289 63 53 chr4 133379948 133380043 -22250077 + B4A SINE B4 14 109 -183 1 1602 640 238 75 60 chr4 133380072 133380273 -22249847 + B4 SINE B4 89 292 0 1 1602 444 187 0 14 chr4 133380560 133380664 -22249456 - B1_Mur4 SINE Alu -7 143 17 1 1602 233 265 194 56 chr4 133380664 133380720 -22249400 - ID_B1 SINE B4 -7 217 36 1 1602 1199 75 0 0 chr4 133380799 133380946 -22249174 + B1_Mus1 SINE Alu 2 148 0 1 1602 189 0 0 0 chr4 133380946 133380967 -22249153 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1602 183 205 0 0 chr4 133381063 133381102 -22249018 + T-rich Low_complexity Low_complexity 2 40 0 1 1602 1184 61 0 0 chr4 133381108 133381256 -22248864 - B1_Mus1 SINE Alu 0 148 1 1 1602 26 0 0 0 chr4 133381260 133381286 -22248834 + AT_rich Low_complexity Low_complexity 1 26 0 1 1602 431 204 71 51 chr4 133381336 133381349 -22248771 - B1_Mur2 SINE Alu -2 147 130 1 1602 216 0 0 0 chr4 133381349 133381373 -22248747 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1602 500 184 6 4 chr4 133381373 133381457 -22248663 - B1_Mus2 SINE Alu -20 129 48 1 1602 22 35 0 0 chr4 133381471 133381500 -22248620 + AT_rich Low_complexity Low_complexity 1 29 0 1 1602 221 321 55 54 chr4 133381593 133381712 -22248408 - MIRb SINE MIR -152 124 5 1 1602 280 196 27 0 chr4 133382154 133382214 -22247906 - PB1D10 SINE Alu -7 113 47 1 1602 981 151 118 0 chr4 133382243 133382429 -22247691 - B3 SINE B2 -7 209 2 1 1602 706 198 0 0 chr4 133382443 133382559 -22247561 - B1_Mur3 SINE Alu -32 117 2 1 1602 515 53 0 13 chr4 133382594 133382670 -22247450 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1602 1354 85 11 0 chr4 133382817 133382994 -22247126 + B2_Mm1t SINE B2 1 179 -14 1 1602 544 289 65 13 chr4 133383021 133383175 -22246945 - RSINE1 SINE B4 -2 163 2 1 1602 275 132 0 0 chr4 133383191 133383229 -22246891 + MurSatRep1 Unknown Unknown 229 266 -1871 1 1602 1181 89 60 22 chr4 133383259 133383442 -22246678 - B2_Mm2 SINE B2 -4 191 2 1 1602 698 199 56 7 chr4 133383445 133383587 -22246533 - B1_Mur1 SINE Alu 0 149 1 1 1602 599 262 71 46 chr4 133383587 133383782 -22246338 - B3 SINE B2 -15 201 1 1 1602 398 170 163 41 chr4 133384041 133384139 -22245981 + PB1D9 SINE Alu 10 119 -1 1 1602 232 274 0 31 chr4 133385906 133385946 -22244174 + polypyrimidine Low_complexity Low_complexity 23 62 0 1 1602 192 40 0 0 chr4 133385946 133385971 -22244149 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 1 1602 232 274 0 31 chr4 133385971 133385994 -22244126 + polypyrimidine Low_complexity Low_complexity 1 22 0 1 1602 526 234 99 0 chr4 133386038 133386179 -22243941 + RSINE1 SINE B4 3 157 -8 1 1602 445 223 67 19 chr4 133386244 133386257 -22243863 + MT2B LTR ERVL 148 165 -436 1 1602 671 168 98 15 chr4 133386257 133386390 -22243730 + B1_Mus2 SINE Alu 1 144 -3 1 1602 912 118 24 55 chr4 133386469 133386644 -22243476 + B2_Mm2 SINE B2 1 179 -37 1 1602 522 0 0 0 chr4 133386645 133386703 -22243417 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1602 292 125 162 16 chr4 133386759 133386831 -22243289 - PB1D9 SINE Alu 0 120 39 1 1602 486 0 0 0 chr4 133386866 133386920 -22243200 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1602 928 87 79 0 chr4 133386920 133387046 -22243074 - B1_Mus2 SINE Alu -10 137 2 1 1602 1555 57 5 0 chr4 133387056 133387248 -22242872 - B2_Mm1t SINE B2 0 193 1 1 1602 339 337 18 19 chr4 133387316 133387449 -22242671 + PB1D10 SINE Alu 2 130 -19 1 1602 283 205 10 135 chr4 133387429 133387525 -22242595 + MT2B2 LTR ERVL 156 239 -345 1 1602 492 254 6 183 chr4 133387440 133387609 -22242511 + B1_Mur1 SINE Alu 1 139 -10 1 1602 24 0 0 0 chr4 133387621 133387645 -22242475 + AT_rich Low_complexity Low_complexity 1 24 0 1 1602 425 340 31 68 chr4 133387654 133387765 -22242355 + RSINE1 SINE B4 11 124 -41 1 1602 2027 222 46 112 chr4 133387765 133388419 -22241701 + RMER19C LTR ERVK 1 611 0 1 1602 387 340 31 68 chr4 133388419 133388468 -22241652 + RSINE1 SINE B4 125 165 0 1 1602 1228 73 0 6 chr4 133388506 133388672 -22241448 - B2_Mm2 SINE B2 -29 166 2 1 1602 22 70 0 0 chr4 133388672 133388715 -22241405 + AT_rich Low_complexity Low_complexity 1 43 0 1 1602 973 169 54 43 chr4 133388722 133388907 -22241213 + B2_Mm2 SINE B2 1 187 -8 1 1602 422 221 86 9 chr4 133388935 133389040 -22241080 - ID_B1 SINE B4 -108 116 4 1 1602 284 246 0 14 chr4 133389776 133389850 -22240270 + PB1D7 SINE Alu 7 79 -41 1 1602 301 156 59 59 chr4 133389784 133389852 -22240268 + ID_B1 SINE B4 92 159 -65 1 1602 1099 119 61 22 chr4 133389852 133390032 -22240088 + B2_Mm2 SINE B2 5 191 -4 1 1602 1016 114 217 22 chr4 133390046 133390226 -22239894 + B3 SINE B2 1 215 -1 1 1602 1080 155 72 238 chr4 133390234 133390473 -22239647 + ORR1B1 LTR MaLR 48 314 -80 1 1602 999 134 85 0 chr4 133390473 133390637 -22239483 + B2_Mm1t SINE B2 2 179 -14 1 1602 438 46 667 0 chr4 133390640 133390727 -22239393 - B1_Mus2 SINE Alu -1 146 2 1 1602 1080 155 72 238 chr4 133390727 133390755 -22239365 + ORR1B1 LTR MaLR 315 315 -79 1 1602 1155 82 7 0 chr4 133390755 133390902 -22239218 + B1_Mus1 SINE Alu 1 148 0 1 1602 1080 155 72 238 chr4 133390902 133391045 -22239075 + ORR1B1 LTR MaLR 315 394 0 1 1602 239 242 211 0 chr4 133391066 133391194 -22238926 + L1M5 LINE L1 5287 5441 -738 1 1602 214 125 83 0 chr4 133391283 133391331 -22238789 + (TAGTG)n Simple_repeat Simple_repeat 3 54 0 1 1602 1200 61 0 13 chr4 133391469 133391618 -22238502 + B1_Mus2 SINE Alu 1 147 0 1 1602 244 195 0 0 chr4 133391667 133391708 -22238412 + B3 SINE B2 1 41 -175 1 1602 1160 50 14 0 chr4 133391717 133391858 -22238262 + B1_Mus2 SINE Alu 5 147 0 1 1602 1706 31 0 0 chr4 133391886 133392079 -22238041 + B2_Mm1a SINE B2 1 193 0 1 1602 775 232 72 17 chr4 133392079 133392259 -22237861 + B3 SINE B2 27 216 0 1 1602 307 302 111 9 chr4 133392277 133392388 -22237732 + B1F2 SINE Alu 5 127 -22 1 1602 191 36 36 0 chr4 133392395 133392423 -22237697 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1602 506 233 61 7 chr4 133392427 133392574 -22237546 + ID_B1 SINE B4 1 155 -69 1 1602 293 197 0 101 chr4 133392507 133392586 -22237534 + B1F2 SINE Alu 8 78 -71 1 1602 207 0 0 0 chr4 133392649 133392672 -22237448 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1602 183 80 0 0 chr4 133392677 133392702 -22237418 + (ACGTG)n Simple_repeat Simple_repeat 1 25 0 1 1602 489 34 0 0 chr4 133392814 133392873 -22237247 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 1602 343 203 0 0 chr4 133392900 133392964 -22237156 - B4 SINE B4 -227 65 2 1 1602 521 182 424 20 chr4 133393029 133393180 -22236940 + B3 SINE B2 2 213 -3 1 1602 973 52 0 4 chr4 133393184 133393334 -22236786 + B1_Mm SINE Alu 3 148 0 1 1602 241 273 45 35 chr4 133393343 133393544 -22236576 + L1M5 LINE L1 5290 5492 -952 1 1602 226 186 0 0 chr4 133393557 133393600 -22236520 + RMER30 DNA MER1_type 7 49 -153 1 1602 253 164 98 0 chr4 133393648 133393709 -22236411 + L1MD LINE L1 5511 5577 -665 1 1602 893 140 0 8 chr4 133393719 133393849 -22236271 - B1_Mus2 SINE Alu -18 129 1 1 1602 286 176 0 0 chr4 133393867 133393918 -22236202 - PB1D7 SINE Alu 0 120 70 1 1602 546 167 116 63 chr4 133393930 133394064 -22236056 - B1_Mur4 SINE Alu -1 149 1 1 1602 495 0 0 0 chr4 133394085 133394140 -22235980 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1602 203 0 37 0 chr4 133394141 133394168 -22235952 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1602 352 218 13 0 chr4 133394170 133394248 -22235872 - B3 SINE B2 -20 196 118 1 1602 393 285 34 30 chr4 133394288 133394432 -22235688 - PB1D7 SINE Alu 0 149 8 1 1602 1221 106 0 0 chr4 133394476 133394656 -22235464 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1602 401 95 0 16 chr4 133394656 133394720 -22235400 + (TCC)n Simple_repeat Simple_repeat 1 63 0 1 1602 1261 54 0 0 chr4 133394730 133394878 -22235242 - B1_Mus1 SINE Alu 0 148 1 1 1602 566 130 118 18 chr4 133394907 133395017 -22235103 + B2_Mm2 SINE B2 9 129 -66 1 1602 311 60 60 0 chr4 133395110 133395177 -22234943 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1602 180 0 0 0 chr4 133395726 133395746 -22234374 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1602 966 46 131 0 chr4 133395746 133395876 -22234244 - B1_Mus2 SINE Alu 0 147 1 1 1602 538 252 25 8 chr4 133395894 133396014 -22234106 + B1F2 SINE Alu 3 124 -25 1 1602 350 211 31 72 chr4 133396079 133396176 -22233944 + B1_Mur1 SINE Alu 45 137 -12 1 1602 413 224 0 0 chr4 133396137 133396222 -22233898 - B1F2 SINE Alu -63 86 2 1 1602 339 272 21 21 chr4 133396250 133396344 -22233776 - PB1D10 SINE Alu 0 117 24 1 1602 353 250 0 0 chr4 133396447 133396515 -22233605 - ID4_ SINE ID -14 69 2 1 1602 263 294 28 47 chr4 133396519 133396626 -22233494 - PB1D10 SINE Alu -1 116 12 1 1602 1147 52 0 0 chr4 133396698 133396834 -22233286 + B1_Mm SINE Alu 3 138 -9 1 1602 351 60 0 0 chr4 133396834 133396884 -22233236 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1602 531 171 17 43 chr4 133397543 133397659 -22232461 - B1_Mur3 SINE Alu -3 146 34 1 1602 254 240 13 13 chr4 133397669 133397745 -22232375 + (CACCC)n Simple_repeat Simple_repeat 4 79 0 1 1602 576 192 117 51 chr4 133397745 133397882 -22232238 + B1_Mus1 SINE Alu 3 148 0 1 1602 237 172 35 0 chr4 133397989 133398009 -22232111 + polypyrimidine Low_complexity Low_complexity 42 62 0 1 1602 1253 89 72 0 chr4 133398009 133398189 -22231931 - B2_Mm1t SINE B2 0 193 1 1 1602 237 172 35 0 chr4 133398189 133398226 -22231894 + polypyrimidine Low_complexity Low_complexity 4 41 0 1 1602 324 0 0 0 chr4 133398226 133398262 -22231858 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1602 215 122 0 58 chr4 133398295 133398311 -22231809 + T-rich Low_complexity Low_complexity 34 49 0 1 1602 1199 55 0 0 chr4 133398311 133398457 -22231663 - B1_Mm SINE Alu 0 147 2 1 1602 215 122 0 58 chr4 133398457 133398492 -22231628 + T-rich Low_complexity Low_complexity 2 33 0 1 1602 1223 48 7 0 chr4 133398497 133398643 -22231477 - B1_Mus1 SINE Alu -1 147 1 1 1602 358 294 94 14 chr4 133398669 133398807 -22231313 + HAL1-3A_ME LINE L1 1976 2124 -734 1 1602 192 77 0 0 chr4 133398807 133398833 -22231287 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1 1602 519 17 0 0 chr4 133398988 133399048 -22231072 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1602 455 291 94 7 chr4 133399626 133399775 -22230345 + RSINE1 SINE B4 4 165 0 1 1602 1275 34 0 0 chr4 133399811 133399957 -22230163 - B1_Mus2 SINE Alu 0 147 2 1 1602 672 36 0 0 chr4 133399978 133400062 -22230058 + B2_Mm1t SINE B2 1 84 -109 1 1602 1165 49 56 0 chr4 133400060 133400222 -22229898 - B2_Mm1a SINE B2 -22 171 1 1 1602 252 0 0 0 chr4 133400224 133400252 -22229868 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1602 286 227 15 0 chr4 133400335 133400401 -22229719 - ID_B1 SINE B4 -22 202 136 1 1602 650 292 18 0 chr4 133400604 133400775 -22229345 + B3A SINE B2 1 174 -24 1 1602 543 162 0 29 chr4 133400804 133400906 -22229214 - B1_Mur3 SINE Alu -1 148 50 1 1602 609 14 0 0 chr4 133400934 133401004 -22229116 + (TAAA)n Simple_repeat Simple_repeat 4 73 0 1 1602 452 202 9 19 chr4 133401007 133401113 -22229007 + B1_Mur3 SINE Alu 42 146 -3 1 1602 1410 79 21 0 chr4 133401398 133401587 -22228533 - B2_Mm1t SINE B2 0 193 1 1 1602 235 224 0 0 chr4 133401717 133401766 -22228354 + YREP_Mm Unknown Unknown 248 296 -1516 1 1602 294 189 0 0 chr4 133401724 133401777 -22228343 - ID_B1 SINE B4 -81 143 91 1 1602 625 178 103 7 chr4 133401971 133402107 -22228013 - B1_Mur3 SINE Alu 0 149 1 1 1602 847 132 8 0 chr4 133402137 133402266 -22227854 - B3 SINE B2 -86 130 1 1 1602 321 219 160 23 chr4 133402759 133402890 -22227230 + MIRb SINE MIR 78 226 -42 1 1602 443 321 10 72 chr4 133404861 133405069 -22225051 + ID_B1 SINE B4 28 222 -2 1 1602 370 239 32 161 chr4 133405086 133405140 -22224980 + B3A SINE B2 30 76 -122 1 1602 708 204 0 45 chr4 133405140 133405254 -22224866 - B1_Mus1 SINE Alu 0 148 38 1 1602 1594 38 0 16 chr4 133405254 133405443 -22224677 - B2_Mm1a SINE B2 -6 187 2 1 1602 708 204 0 45 chr4 133405443 133405482 -22224638 - B1_Mus1 SINE Alu -111 37 2 1 1602 370 239 32 161 chr4 133405482 133405582 -22224538 + B3A SINE B2 77 164 -34 1 1602 480 269 48 28 chr4 133405622 133405767 -22224353 + B1_Mur2 SINE Alu 2 149 0 1 1602 1011 49 0 169 chr4 133405824 133405987 -22224133 + B1_Mus1 SINE Alu 2 138 -10 1 1602 278 26 26 0 chr4 133405987 133406026 -22224094 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1602 1633 47 0 10 chr4 133407675 133407870 -22222250 - B2_Mm1a SINE B2 0 193 1 1 1602 600 271 57 13 chr4 133408065 133408222 -22221898 + RSINE1 SINE B4 2 165 0 1 1602 2681 38 25 0 chr4 133408224 133408539 -22221581 + ORR1A2 LTR MaLR 2 324 -3 1 1602 573 123 0 0 chr4 133408539 133408645 -22221475 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1602 750 99 0 0 chr4 133408858 133408969 -22221151 + B1_Mur4 SINE Alu 34 144 -6 1 1602 392 326 83 62 chr4 133409031 133409273 -22220847 + B4A SINE B4 46 292 0 1 1602 203 284 230 26 chr4 133409322 133409474 -22220646 - MIRc SINE MIR -39 229 47 1 1602 376 343 52 6 chr4 133410039 133410212 -22219908 + B4A SINE B4 109 289 -3 1 1602 583 171 9 26 chr4 133410207 133410321 -22219799 + B1_Mus1 SINE Alu 34 145 -3 1 1602 243 304 99 20 chr4 133410345 133410496 -22219624 + L1MD LINE L1 5656 5818 -541 1 1602 198 0 0 0 chr4 133410637 133410659 -22219461 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1602 222 150 0 0 chr4 133410705 133410745 -22219375 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1602 264 200 33 0 chr4 133411035 133411095 -22219025 - B1_Mus2 SINE Alu -69 78 17 1 1602 544 288 75 16 chr4 133411108 133411243 -22218877 - ID_B1 SINE B4 0 224 83 1 1602 663 13 0 0 chr4 133411243 133411319 -22218801 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1602 544 288 75 16 chr4 133411319 133411370 -22218750 - ID SINE ID -142 82 28 1 1602 498 33 0 0 chr4 133411409 133411469 -22218651 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1602 284 250 0 0 chr4 133411472 133411532 -22218588 - ID4_ SINE ID -10 73 14 1 1602 631 217 105 0 chr4 133411740 133411883 -22218237 + RSINE1 SINE B4 3 160 -5 1 1602 1193 55 0 7 chr4 133412430 133412578 -22217542 + B1_Mus1 SINE Alu 2 148 0 1 1602 439 262 16 37 chr4 133412652 133412781 -22217339 + B1F SINE Alu 3 127 -22 1 1602 339 236 13 226 chr4 133412670 133412829 -22217291 + ID_B1 SINE B4 100 224 0 1 1602 557 139 126 44 chr4 133412833 133412968 -22217152 + B1_Mus2 SINE Alu 1 146 -1 1 1602 351 330 0 0 chr4 133413323 133413423 -22216697 - PB1D9 SINE Alu -8 112 13 1 1602 373 162 53 3 chr4 133413558 133413645 -22216475 + B3A SINE B2 2 99 -99 1 1602 248 56 0 0 chr4 133413718 133413754 -22216366 - B1_Mur4 SINE Alu -1 149 114 1 1602 750 221 131 92 chr4 133413752 133413794 -22216326 + MTD LTR MaLR 168 208 -211 1 1602 1020 165 74 11 chr4 133413794 133413984 -22216136 + B3 SINE B2 1 202 -14 1 1602 648 38 0 0 chr4 133413984 133414063 -22216057 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 1 1602 750 221 131 92 chr4 133414063 133414248 -22215872 + MTD LTR MaLR 209 404 -15 1 1602 1165 29 43 0 chr4 133414299 133414439 -22215681 - B1_Mus2 SINE Alu 0 147 2 1 1602 1381 82 0 84 chr4 133414441 133414607 -22215513 - B2_Mm2 SINE B2 0 195 41 1 1602 198 0 0 0 chr4 133414607 133414629 -22215491 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1602 1206 43 0 0 chr4 133414634 133414775 -22215345 - B1_Mus2 SINE Alu -6 141 1 1 1602 1381 82 0 84 chr4 133414775 133414815 -22215305 - B2_Mm2 SINE B2 -155 40 1 1 1602 566 301 83 53 chr4 133414817 133415045 -22215075 + B4A SINE B4 58 292 0 1 1602 325 258 0 43 chr4 133415103 133415196 -22214924 - PB1D10 SINE Alu -11 106 18 1 1602 401 234 64 27 chr4 133415214 133415324 -22214796 - PB1D9 SINE Alu 0 120 7 1 1602 296 206 58 14 chr4 133417617 133417686 -22212434 + ID4 SINE ID 12 83 0 1 1602 613 239 29 0 chr4 133418072 133418210 -22211910 + B1F SINE Alu 1 142 -7 1 1602 1640 32 16 0 chr4 133418901 133419091 -22211029 + B2_Mm1a SINE B2 1 193 0 1 1602 737 199 166 0 chr4 133421957 133422138 -22207982 + B3 SINE B2 5 215 -1 1 1602 291 281 202 0 chr4 133422509 133422598 -22207522 - PB1 SINE Alu -20 107 1 1 1602 254 209 6 3 chr4 133422707 133422759 -22207361 + B1_Mur4 SINE Alu 1 53 -64 1 1602 235 331 71 80 chr4 133423276 133423514 -22206606 + L1MC4a LINE L1 5683 5936 -1946 1 1602 2357 64 0 9 chr4 133423514 133423830 -22206290 + L1Md_F2 LINE L1 6270 6582 0 1 1602 235 331 71 80 chr4 133423830 133423942 -22206178 + L1MC4a LINE L1 5937 6030 -1852 1 1602 1223 36 0 0 chr4 133424029 133424169 -22205951 - B1_Mus2 SINE Alu -7 140 1 1 1602 360 265 204 0 chr4 133424215 133424313 -22205807 + RSINE1 SINE B4 19 136 -29 1 1602 320 190 98 69 chr4 133424472 133424575 -22205545 - PB1 SINE Alu -50 98 2 1 1602 1689 36 0 0 chr4 133424638 133424830 -22205290 + B2_Mm1a SINE B2 2 193 0 1 1602 455 257 0 26 chr4 133425933 133426049 -22204071 - ID_B1 SINE B4 -9 215 103 1 1602 183 80 0 0 chr4 133426989 133427014 -22203106 + (TCC)n Simple_repeat Simple_repeat 2 26 0 1 1602 1133 114 0 0 chr4 133427016 133427165 -22202955 - B1_Mur4 SINE Alu -1 149 1 1 1602 198 0 0 0 chr4 133428342 133428364 -22201756 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1602 283 96 39 0 chr4 133429275 133429327 -22200793 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1602 206 164 0 127 chr4 133429693 133429756 -22200364 + (CAGGG)n Simple_repeat Simple_repeat 1 55 0 1 1603 186 260 68 0 chr4 133431906 133431979 -22198141 - MIRc SINE MIR -101 167 90 1 1603 187 341 126 16 chr4 133432175 133432357 -22197763 - L2c LINE L2 -158 3229 3028 1 1603 1232 122 33 0 chr4 133433030 133433211 -22196909 - B2_Mm2 SINE B2 -8 187 1 1 1603 622 187 101 29 chr4 133433272 133433410 -22196710 - B1_Mur1 SINE Alu 0 149 2 1 1603 1076 194 44 0 chr4 133434209 133434415 -22195705 + B3 SINE B2 2 216 0 1 1603 298 243 37 86 chr4 133434615 133434696 -22195424 - B1F SINE Alu -8 141 65 1 1603 355 295 10 10 chr4 133434668 133434764 -22195356 - ID_B1 SINE B4 -25 199 104 1 1603 301 314 59 8 chr4 133434764 133434782 -22195338 - B1F SINE Alu -23 121 2 1 1603 529 126 236 32 chr4 133434916 133435039 -22195081 - B1_Mus1 SINE Alu 0 148 1 1 1603 279 350 43 7 chr4 133435505 133435550 -22194570 - MIRc SINE MIR -38 230 183 1 1603 462 18 0 0 chr4 133435550 133435605 -22194515 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1603 279 350 43 7 chr4 133435605 133435700 -22194420 - MIRc SINE MIR -86 182 85 1 1603 738 238 6 30 chr4 133435729 133435894 -22194226 + RSINE1 SINE B4 3 163 -2 1 1603 554 250 17 33 chr4 133435940 133436060 -22194060 + PB1D9 SINE Alu 2 119 -1 1 1603 1190 75 0 0 chr4 133436079 133436226 -22193894 + B1_Mus1 SINE Alu 2 148 0 1 1603 24 0 0 0 chr4 133436248 133436272 -22193848 + AT_rich Low_complexity Low_complexity 1 24 0 1 1603 210 105 0 0 chr4 133436917 133436955 -22193165 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 1 1603 210 143 0 28 chr4 133437112 133437148 -22192972 + L2b LINE L2 3112 3146 -229 1 1603 188 339 79 16 chr4 133437169 133437295 -22192825 + MIRb SINE MIR 67 200 -68 1 1603 268 360 87 14 chr4 133438431 133438464 -22191656 + MIR SINE MIR 2 33 -229 1 1603 1108 88 0 26 chr4 133438464 133438615 -22191505 + B1_Mus2 SINE Alu 1 147 0 1 1603 268 360 87 14 chr4 133438615 133438719 -22191401 + MIR SINE MIR 34 148 -114 1 1603 573 224 0 23 chr4 133439065 133439193 -22190927 + RSINE1 SINE B4 2 126 -39 1 1603 414 39 0 0 chr4 133439199 133439251 -22190869 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1603 409 228 0 0 chr4 133439319 133439398 -22190722 - U6 snRNA snRNA -6 101 23 1 1603 1249 29 0 0 chr4 133439736 133439876 -22190244 - B1_Mus1 SINE Alu -7 141 2 1 1603 180 277 202 59 chr4 133439876 133439995 -22190125 - MIRc SINE MIR -101 167 32 1 1603 710 232 0 56 chr4 133440386 133440546 -22189574 + B3A SINE B2 1 151 -47 1 1603 256 256 2 0 chr4 133440568 133440625 -22189495 + ID4_ SINE ID 7 64 -19 1 1603 210 216 0 0 chr4 133440632 133440669 -22189451 + G-rich Low_complexity Low_complexity 2 38 0 1 1603 32 67 0 0 chr4 133443393 133443453 -22186667 + GC_rich Low_complexity Low_complexity 1 60 0 1 1603 487 214 144 8 chr4 133444749 133444867 -22185253 + RSINE1 SINE B4 3 136 -29 1 1603 758 142 31 16 chr4 133444933 133445062 -22185058 + B1F2 SINE Alu 18 148 -1 1 1603 200 61 0 57 chr4 133445090 133445125 -22184995 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1603 338 243 134 9 chr4 133445260 133445372 -22184748 + B4A SINE B4 105 230 -62 1 1603 477 299 5 0 chr4 133445384 133445831 -22184289 + (CA)n Simple_repeat Simple_repeat 1 449 0 1 1603 257 281 0 0 chr4 133445842 133445899 -22184221 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1603 180 27 53 26 chr4 133446076 133446114 -22184006 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1603 1233 41 7 0 chr4 133446118 133446263 -22183857 - B1_Mus2 SINE Alu 0 147 2 1 1603 219 320 13 0 chr4 133446275 133446350 -22183770 + MIRb SINE MIR 117 192 -76 1 1603 396 216 41 52 chr4 133446406 133446521 -22183599 + B1F1 SINE Alu 7 120 0 1 1603 279 301 20 19 chr4 133446534 133446639 -22183481 + PB1D10 SINE Alu 1 108 -12 1 1603 1427 82 0 44 chr4 133446639 133446843 -22183277 + B2_Mm2 SINE B2 1 195 0 1 1603 587 267 17 2 chr4 133446864 133447016 -22183104 + RSINE1 SINE B4 5 159 -6 1 1603 1232 81 0 0 chr4 133447054 133447214 -22182906 + B2_Mm2 SINE B2 2 161 -34 1 1603 369 0 0 0 chr4 133447214 133447255 -22182865 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 1603 1223 42 7 0 chr4 133447279 133447422 -22182698 + B1_Mus2 SINE Alu 1 144 -3 1 1603 207 0 0 0 chr4 133447422 133447445 -22182675 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1603 685 181 0 8 chr4 133447455 133447572 -22182548 + B1_Mur4 SINE Alu 23 138 -12 1 1603 276 30 0 0 chr4 133447576 133447609 -22182511 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 1 1603 612 237 146 5 chr4 133447609 133447808 -22182312 + B4A SINE B4 3 229 -63 1 1603 214 269 25 13 chr4 133447813 133447892 -22182228 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1603 214 327 56 9 chr4 133447927 133448035 -22182085 - MIR SINE MIR -37 225 113 1 1603 275 322 11 0 chr4 133448156 133448243 -22181877 - MER53 DNA hAT -104 89 2 1 1603 493 232 17 43 chr4 133448447 133448564 -22181556 + B1_Mur1 SINE Alu 36 149 0 1 1603 552 191 95 9 chr4 133448579 133448695 -22181425 - RSINE1 SINE B4 -37 128 3 1 1603 1836 150 137 12 chr4 133448756 133449100 -22181020 + RMER15 LTR ERVL 176 562 -13 1 1603 845 122 15 15 chr4 133449106 133449239 -22180881 - B1_Mur3 SINE Alu -2 147 15 1 1603 1450 198 27 33 chr4 133449268 133449603 -22180517 + RMER15-int LTR ERVL 1 333 -4666 1 1603 325 173 147 0 chr4 133449660 133449735 -22180385 + B1_Mur4 SINE Alu 2 87 -63 1 1603 1241 248 153 16 chr4 133449752 133450191 -22179929 + RMER15-int LTR ERVL 1890 2388 -2611 1 1603 1258 54 0 0 chr4 133450319 133450466 -22179654 + B1_Mm SINE Alu 1 147 0 1 1603 831 126 0 25 chr4 133450525 133450647 -22179473 + B1_Mur4 SINE Alu 13 131 -19 1 1603 719 159 38 8 chr4 133450688 133450821 -22179299 + RMER15 LTR ERVL 31 167 -408 1 1603 459 0 0 0 chr4 133450830 133450881 -22179239 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1603 225 0 0 0 chr4 133450923 133450948 -22179172 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1603 1035 134 119 17 chr4 133450950 133451186 -22178934 - RMER17C LTR ERVK -148 262 3 1 1603 208 298 0 0 chr4 133451192 133451239 -22178881 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 1 1603 2066 175 50 16 chr4 133451270 133451653 -22178467 + RMER15 LTR ERVL 180 575 0 1 1603 356 195 298 9 chr4 133451731 133451845 -22178275 - B3 SINE B2 -69 147 1 1 1603 988 129 0 0 chr4 133451865 133452005 -22178115 - B1_Mus1 SINE Alu -7 141 2 1 1603 387 191 59 0 chr4 133452277 133452345 -22177775 + B1_Mur4 SINE Alu 20 91 -59 1 1603 539 223 76 34 chr4 133452345 133452538 -22177582 - ORR1D1 LTR MaLR 0 384 179 1 1603 905 238 48 44 chr4 133452888 133453160 -22176960 - ORR1D1 LTR MaLR -99 275 3 1 1603 289 245 0 19 chr4 133453779 133453883 -22176237 + CT-rich Low_complexity Low_complexity 4 105 0 1 1603 325 225 14 14 chr4 133453884 133453956 -22176164 - ID2 SINE ID -11 72 1 1 1603 250 290 31 21 chr4 133454056 133454160 -22175960 - MIR SINE MIR -129 139 36 1 1603 236 305 89 24 chr4 133454317 133454485 -22175635 + L2a LINE L2 2934 3112 -314 1 1603 207 148 35 69 chr4 133454575 133454633 -22175487 + L2a LINE L2 3280 3335 -91 1 1603 435 254 23 27 chr4 133454938 133455083 -22175037 - B1_Mur3 SINE Alu -9 138 4 1 1603 862 245 102 8 chr4 133455083 133455318 -22174802 + MER58B DNA MER1_type 75 331 -10 1 1603 194 239 43 0 chr4 133455325 133455371 -22174749 - L2c LINE L2 -86 3301 3254 1 1603 612 263 21 21 chr4 133455623 133455763 -22174357 - B1F SINE Alu -7 142 3 1 1603 3166 49 201 2 chr4 133455789 133456216 -22173904 - RLTR1B LTR ERV1 0 512 1 1 1603 387 291 93 0 chr4 133456469 133456620 -22173500 + MER97c DNA MER1_type? 20 184 -906 1 1603 1200 35 7 0 chr4 133456620 133456762 -22173358 + B1_Mus2 SINE Alu 5 147 0 1 1603 230 19 113 19 chr4 133456762 133456815 -22173305 + A-rich Low_complexity Low_complexity 2 59 0 1 1603 871 174 7 7 chr4 133456829 133456979 -22173141 + B1_Mur4 SINE Alu 1 150 0 1 1603 742 189 7 22 chr4 133457145 133457280 -22172840 - RSINE1 SINE B4 -31 134 2 1 1603 534 203 35 76 chr4 133457429 133457573 -22172547 + B1_Mur4 SINE Alu 6 143 -7 1 1603 22 0 0 0 chr4 133457872 133457894 -22172226 + AT_rich Low_complexity Low_complexity 1 22 0 1 1603 1169 50 43 0 chr4 133457894 133458035 -22172085 - B1_Mus2 SINE Alu 0 147 1 1 1603 1087 82 132 0 chr4 133458076 133458235 -22171885 + B2_Mm2 SINE B2 2 181 -14 1 1603 1179 75 0 0 chr4 133458254 133458400 -22171720 - B1_Mm SINE Alu 0 147 2 1 1603 210 308 154 0 chr4 133458425 133458503 -22171617 - B4A SINE B4 -154 138 49 1 1603 524 156 208 0 chr4 133458435 133458531 -22171589 - B3 SINE B2 -100 116 1 1 1603 700 238 45 55 chr4 133458535 133458735 -22171385 - B3A SINE B2 0 198 1 1 1603 742 94 0 9 chr4 133458927 133459034 -22171086 - B2_Mm2 SINE B2 -88 107 2 1 1603 724 197 6 58 chr4 133459050 133459206 -22170914 - B1_Mur1 SINE Alu 0 149 2 1 1603 270 258 83 31 chr4 133459432 133459528 -22170592 - MIR SINE MIR -65 143 43 1 1603 517 248 26 0 chr4 133459848 133459965 -22170155 + RMER10B LTR ERVL 279 398 0 1 1603 279 0 0 0 chr4 133459980 133460011 -22170109 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1603 288 267 101 20 chr4 133460021 133460170 -22169950 + L1MC5 LINE L1 7037 7197 -764 1 1603 748 270 23 5 chr4 133460319 133460535 -22169585 + ID_B1 SINE B4 2 221 -3 1 1603 347 301 89 17 chr4 133460569 133460748 -22169372 + L1MC5 LINE L1 7277 7468 -493 1 1603 273 179 90 0 chr4 133460853 133460920 -22169200 + B3A SINE B2 2 74 -124 1 1603 299 345 45 34 chr4 133461155 133461332 -22168788 - MTEa LTR MaLR -3 376 198 1 1603 260 282 11 79 chr4 133461339 133461516 -22168604 + G-rich Low_complexity Low_complexity 3 167 0 1 1603 640 213 16 0 chr4 133461556 133461678 -22168442 - MTEa LTR MaLR -243 136 13 1 1603 424 276 40 40 chr4 133461722 133461873 -22168247 - ID_B1 SINE B4 0 224 74 1 1603 511 208 47 23 chr4 133461731 133461859 -22168261 - B1F SINE Alu -9 140 10 1 1603 230 264 55 146 chr4 133461859 133461895 -22168225 + YREP_Mm Unknown Unknown 186 334 -1478 1 1603 1107 30 74 0 chr4 133461901 133462036 -22168084 + B1_Mus1 SINE Alu 2 146 -2 1 1603 291 71 0 0 chr4 133462036 133462078 -22168042 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 1603 1510 64 16 0 chr4 133462103 133462290 -22167830 + B2_Mm2 SINE B2 2 191 -4 1 1603 26 0 0 0 chr4 133462292 133462318 -22167802 + AT_rich Low_complexity Low_complexity 1 26 0 1 1603 1194 79 5 128 chr4 133462318 133462493 -22167627 + B2_Mm2 SINE B2 1 159 -36 1 1603 1045 35 19 65 chr4 133462493 133462647 -22167473 - B1_Mus1 SINE Alu 0 148 2 1 1603 1194 79 5 128 chr4 133462647 133462689 -22167431 + B2_Mm2 SINE B2 160 191 -4 1 1603 725 213 72 33 chr4 133462750 133462930 -22167190 + B3A SINE B2 2 188 -10 1 1603 924 148 7 26 chr4 133462967 133463120 -22167000 + B1_Mur4 SINE Alu 1 150 0 1 1603 430 324 10 0 chr4 133463311 133463413 -22166707 - ID_B1 SINE B4 -49 175 73 1 1603 23 33 0 0 chr4 133463432 133463462 -22166658 + AT_rich Low_complexity Low_complexity 1 30 0 1 1603 652 254 7 7 chr4 133463526 133463665 -22166455 + B3 SINE B2 77 215 -1 1 1603 255 280 54 44 chr4 133464170 133464297 -22165823 + MIRb SINE MIR 20 135 -141 1 1603 571 250 32 8 chr4 133464353 133464478 -22165642 + B1F SINE Alu 22 149 0 1 1603 668 154 45 71 chr4 133464485 133464639 -22165481 + B1_Mur4 SINE Alu 1 150 0 1 1603 363 184 49 73 chr4 133465014 133465096 -22165024 + MT2B LTR ERVL 161 240 -361 1 1603 533 181 46 37 chr4 133465026 133465135 -22164985 + PB1D9 SINE Alu 11 120 0 1 1603 3369 21 3 5 chr4 133465165 133465552 -22164568 - L1_Mus1 LINE L1 0 6567 6182 1 1603 605 168 192 0 chr4 133465553 133465678 -22164442 - B1_Mur3 SINE Alu 0 149 1 1 1603 615 62 0 0 chr4 133465785 133465865 -22164255 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1603 484 210 194 0 chr4 133466117 133466241 -22163879 - B1F SINE Alu 0 149 2 1 1603 541 293 7 41 chr4 133467382 133467528 -22162592 + RSINE1 SINE B4 3 143 -22 1 1603 378 267 0 0 chr4 133467718 133467793 -22162327 + ID4 SINE ID 5 79 -4 1 1603 793 229 91 34 chr4 133467826 133468034 -22162086 - ID_B1 SINE B4 -1 223 4 1 1603 1435 91 0 5 chr4 133468313 133468501 -22161619 + B2_Mm2 SINE B2 2 188 -7 1 1603 290 305 92 71 chr4 133468528 133468544 -22161576 + B4 SINE B4 76 219 -73 1 1603 402 274 144 8 chr4 133468544 133468669 -22161451 + B1_Mm SINE Alu 1 142 -7 1 1603 731 161 8 46 chr4 133468682 133468812 -22161308 + B1_Mur4 SINE Alu 20 144 -6 1 1603 294 29 0 0 chr4 133468818 133468853 -22161267 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 1603 1574 137 6 123 chr4 133469113 133469438 -22160682 - ORR1B2 LTR MaLR 0 367 81 1 1603 5086 183 85 33 chr4 133469587 133469814 -22160306 - RMER12 LTR ERVK -133 1189 918 1 1603 225 108 0 0 chr4 133469814 133469851 -22160269 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1603 5086 183 85 33 chr4 133469851 133470316 -22159804 - RMER12 LTR ERVK -405 917 434 1 1603 2532 20 10 7 chr4 133470316 133470620 -22159500 - L1Md_F3 LINE L1 -14 6570 6266 1 1603 5086 183 85 33 chr4 133470620 133470767 -22159353 - RMER12 LTR ERVK -889 433 294 1 1603 1076 51 72 7 chr4 133470767 133470905 -22159215 + B1_Mus2 SINE Alu 1 147 0 1 1603 5086 183 85 33 chr4 133470905 133471193 -22158927 - RMER12 LTR ERVK -1029 293 2 1 1603 255 154 0 0 chr4 133471617 133471656 -22158464 - L2b LINE L2 -225 3150 3112 1 1603 360 276 168 35 chr4 133471757 133471960 -22158160 - B4A SINE B4 -62 230 1 1 1603 507 291 7 39 chr4 133472265 133472402 -22157718 - B1_Mur4 SINE Alu 0 150 15 1 1603 429 0 49 0 chr4 133472402 133472463 -22157657 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1603 489 291 7 39 chr4 133472463 133472479 -22157641 - B1_Mur3 SINE Alu -135 14 1 1 1603 696 240 6 39 chr4 133472479 133472633 -22157487 - B4A SINE B4 -63 229 81 1 1603 320 243 68 59 chr4 133472627 133472745 -22157375 - B3A SINE B2 -4 212 94 1 1603 237 65 0 0 chr4 133472756 133472787 -22157333 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1603 1089 68 7 52 chr4 133472797 133472952 -22157168 - B1_Mus1 SINE Alu 0 148 1 1 1603 365 182 123 0 chr4 133472952 133473038 -22157082 - B3A SINE B2 -121 95 1 1 1603 374 184 102 11 chr4 133473038 133473122 -22156998 - B4 SINE B4 -197 95 4 1 1603 338 346 36 16 chr4 133473197 133473391 -22156729 - HAL1 LINE L1 -110 2397 2200 1 1603 2842 39 2 119 chr4 133473497 133473934 -22156186 + RLTR10 LTR ERVK 1 386 -4 1 1603 1333 58 6 0 chr4 133473950 133474121 -22155999 + RLTR10-int LTR ERVK 41 212 -1775 1 1603 338 168 38 95 chr4 133474146 133474251 -22155869 + RLTR10 LTR ERVK 292 390 0 1 1603 4668 63 1 93 chr4 133474251 133475018 -22155102 + RLTR10-int LTR ERVK 302 998 -989 1 1603 337 240 62 39 chr4 133475082 133475212 -22154908 + RLTR10-int LTR ERVK 1462 1594 -5987 1 1603 8538 18 0 3 chr4 133475294 133476292 -22153828 + RLTR10-int LTR ERVK 990 1984 -3 1 1603 2865 42 5 111 chr4 133476294 133476726 -22153394 + RLTR10 LTR ERVK 1 386 -4 1 1603 188 122 0 39 chr4 133476762 133476813 -22153307 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 1 1603 245 305 149 77 chr4 133476863 133477186 -22152934 - LTR16B1 LTR ERVL -134 346 1 1 1603 3065 85 5 0 chr4 133477329 133477727 -22152393 - MTB LTR MaLR 0 400 1 1 1603 979 136 0 7 chr4 133477802 133477943 -22152177 + B1_Mus2 SINE Alu 1 140 -7 1 1603 261 0 0 0 chr4 133477947 133477976 -22152144 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1603 440 264 77 144 chr4 133477989 133478197 -22151923 + B3A SINE B2 5 198 0 1 1603 207 0 0 0 chr4 133478214 133478237 -22151883 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1603 1229 61 0 0 chr4 133478237 133478384 -22151736 - B1_Mus2 SINE Alu 0 147 1 1 1603 2524 162 64 10 chr4 133478488 133478969 -22151151 + RLTR28 LTR ERVL 2 508 -16 1 1603 258 188 0 20 chr4 133479027 133479076 -22151044 + PB1D10 SINE Alu 51 98 -19 1 1603 378 274 92 17 chr4 133479144 133479263 -22150857 - RMER10B LTR ERVL 0 398 271 1 1603 909 117 41 62 chr4 133479564 133479710 -22150410 - B1_Mur4 SINE Alu -6 144 2 1 1603 1106 104 7 0 chr4 133479710 133479864 -22150256 + RLTR24 LTR ERV1 19 173 -356 1 1603 1057 179 158 11 chr4 133480191 133480263 -22149857 + RLTR24 LTR ERV1 154 242 -287 1 1603 351 0 0 0 chr4 133480263 133480302 -22149818 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1603 1057 179 158 11 chr4 133480302 133480489 -22149631 + RLTR24 LTR ERV1 243 450 -79 1 1603 1260 76 11 23 chr4 133480489 133480665 -22149455 + B2_Mm2 SINE B2 1 174 -21 1 1603 1215 36 0 0 chr4 133480708 133480846 -22149274 - B1_Mm SINE Alu -8 139 2 1 1603 390 155 42 0 chr4 133480848 133480919 -22149201 + RLTR24 LTR ERV1 456 529 0 1 1603 311 222 0 53 chr4 133480990 133481077 -22149043 - ID4 SINE ID -68 84 2 1 1603 59 15 0 0 chr4 133481077 133481143 -22148977 + AT_rich Low_complexity Low_complexity 1 66 0 1 1603 353 240 174 27 chr4 133481351 133481535 -22148585 - HAL1 LINE L1 -1867 640 430 1 1603 222 37 0 0 chr4 133481575 133481602 -22148518 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1 1603 778 148 66 0 chr4 133481607 133481729 -22148391 - B1_Mur1 SINE Alu -8 141 12 1 1603 527 273 44 29 chr4 133481729 133481743 -22148377 - B4 SINE B4 -74 218 81 1 1603 537 16 0 0 chr4 133481794 133481856 -22148264 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 1603 648 195 77 15 chr4 133481867 133481997 -22148123 - B1_Mus1 SINE Alu -1 147 10 1 1603 1469 78 5 0 chr4 133482019 133482211 -22147909 - B2_Mm2 SINE B2 -2 193 1 1 1603 690 246 37 21 chr4 133482220 133482411 -22147709 - B3A SINE B2 -1 197 4 1 1603 637 312 110 74 chr4 133482411 133482835 -22147285 + RLTR18 LTR ERVK 1 408 -208 1 1603 1362 58 63 0 chr4 133482835 133483009 -22147111 - B2_Mm1t SINE B2 -8 185 1 1 1603 637 330 73 108 chr4 133483009 133483205 -22146915 + RLTR18 LTR ERVK 409 608 -8 1 1603 225 296 91 79 chr4 133483312 133483477 -22146643 - B4 SINE B4 0 292 126 1 1603 1151 49 7 7 chr4 133483619 133483762 -22146358 + B1_Mus2 SINE Alu 5 147 0 1 1603 1413 45 0 0 chr4 133483772 133483949 -22146171 + (GAAAA)n Simple_repeat Simple_repeat 2 178 0 1 1603 1571 150 108 62 chr4 133483949 133484290 -22145830 + RLTR16 LTR ERVK 5 361 -144 1 1603 1241 113 43 0 chr4 133484296 133484482 -22145638 - B2_Mm2 SINE B2 -1 194 1 1 1603 624 162 30 0 chr4 133484483 133484582 -22145538 - B1_Mur4 SINE Alu -46 104 3 1 1603 320 281 39 185 chr4 133484582 133484690 -22145430 - ID SINE ID -142 82 5 1 1603 741 246 118 49 chr4 133484825 133485171 -22144949 - ORR1D2 LTR MaLR 0 370 1 1 1603 1595 149 42 0 chr4 133485288 133485549 -22144571 + MTC LTR MaLR 1 272 -149 1 1603 238 233 100 0 chr4 133485565 133485625 -22144495 + PB1D10 SINE Alu 51 116 -1 1 1603 1121 78 14 0 chr4 133485704 133485846 -22144274 + B1_Mus2 SINE Alu 3 146 -1 1 1603 552 275 100 47 chr4 133486051 133486342 -22143778 + RLTR12B LTR ERVK 1 303 -265 1 1603 385 241 121 121 chr4 133486491 133486529 -22143591 + B3A SINE B2 18 46 -152 1 1603 1075 59 73 0 chr4 133486529 133486665 -22143455 - B1_Mus2 SINE Alu 0 147 2 1 1603 385 241 121 121 chr4 133486665 133486791 -22143329 + B3A SINE B2 47 182 -16 1 1603 243 146 0 0 chr4 133486791 133486832 -22143288 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1603 510 96 0 0 chr4 133487082 133487155 -22142965 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1 1603 731 191 202 0 chr4 133487159 133487337 -22142783 - B3 SINE B2 -2 214 1 1 1603 216 0 0 0 chr4 133487453 133487477 -22142643 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1603 192 97 0 0 chr4 133488241 133488272 -22141848 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 1 1603 1263 63 0 0 chr4 133488272 133488430 -22141690 - B2_Mm2 SINE B2 -37 158 1 1 1603 890 206 0 0 chr4 133488932 133489078 -22141042 + B1_Mus2 SINE Alu 2 147 0 1 1603 1173 62 7 0 chr4 133489254 133489399 -22140721 - B1_Mus2 SINE Alu 0 147 2 1 1603 857 272 65 112 chr4 133489399 133489870 -22140250 - RMER4A LTR ERVK -17 449 2 1 1603 3817 156 41 162 chr4 133489870 133490620 -22139500 - MYSERV6-int LTR ERVK 0 8959 8313 1 1603 1129 95 0 0 chr4 133490620 133490767 -22139353 - B1_Mus1 SINE Alu 0 148 2 1 1603 3817 156 41 162 chr4 133490767 133491281 -22138839 - MYSERV6-int LTR ERVK -647 8312 7848 1 1603 947 286 46 4 chr4 133491374 133491634 -22138486 - MurERV4-int LTR ERVK -3525 1735 1465 1 1603 2359 244 11 14 chr4 133491645 133492198 -22137922 - MurERV4-int LTR ERVK -3753 1507 957 1 1603 395 267 57 34 chr4 133492198 133492361 -22137759 + L1M2 LINE L1 3073 3301 -2842 1 1603 2081 211 152 93 chr4 133492361 133492589 -22137531 - MurERV4-int LTR ERVK -4295 965 748 1 1603 1577 58 11 0 chr4 133492589 133492780 -22137340 - B2_Mm1a SINE B2 0 193 1 1 1603 2081 211 152 93 chr4 133492780 133493310 -22136810 - MurERV4-int LTR ERVK -4513 747 163 1 1603 989 245 38 59 chr4 133493357 133493781 -22136339 - RLTR11A2 LTR ERVK -14 513 1 1 1603 597 240 0 0 chr4 133493781 133493910 -22136210 - MurERV4-int LTR ERVK -5092 168 40 1 1603 416 201 45 34 chr4 133493961 133494139 -22135981 - RMER4B LTR ERVK -16 569 358 1 1603 702 181 41 7 chr4 133494275 133494420 -22135700 - RMER4B LTR ERVK -402 183 34 1 1603 1257 21 7 0 chr4 133494452 133494596 -22135524 - B1_Mm SINE Alu -1 146 2 1 1603 1025 161 122 5 chr4 133495409 133495597 -22134523 + B3 SINE B2 1 210 -6 1 1603 892 139 18 4 chr4 133495642 133495780 -22134340 + B1_Mus2 SINE Alu 21 144 -3 1 1603 22 0 0 0 chr4 133495850 133495872 -22134248 + AT_rich Low_complexity Low_complexity 1 22 0 1 1603 294 205 0 0 chr4 133495952 133496035 -22134085 + T-rich Low_complexity Low_complexity 1 83 0 1 1603 875 36 0 9 chr4 133496036 133496149 -22133971 - B1_Mus2 SINE Alu -1 146 35 1 1603 183 312 77 15 chr4 133496515 133496580 -22133540 + MIR SINE MIR 63 131 -131 1 1603 710 237 14 0 chr4 133496716 133496855 -22133265 + B1_Mur1 SINE Alu 3 143 -6 1 1603 403 250 37 9 chr4 133496899 133497008 -22133112 + PB1D10 SINE Alu 1 112 -5 1 1603 367 291 31 16 chr4 133497021 133497150 -22132970 + B1F SINE Alu 1 131 -18 1 1603 216 0 0 0 chr4 133497193 133497217 -22132903 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1603 295 324 36 9 chr4 133497600 133497712 -22132408 - MER5A DNA MER1_type -28 161 47 1 1603 1322 193 109 7 chr4 133497786 133498088 -22132032 + MTD LTR MaLR 1 333 -86 1 1603 509 252 23 16 chr4 133498091 133498220 -22131900 - MT2A LTR ERVL -310 223 94 1 1603 351 271 146 70 chr4 133498232 133498273 -22131847 + B4 SINE B4 30 213 -79 1 1603 697 188 31 15 chr4 133498273 133498403 -22131717 + B1_Mur4 SINE Alu 6 137 -13 1 1603 522 0 0 0 chr4 133498415 133498473 -22131647 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1603 1243 35 0 0 chr4 133498474 133498615 -22131505 + B1_Mus1 SINE Alu 2 142 -6 1 1603 225 0 0 0 chr4 133498620 133498645 -22131475 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1603 631 84 0 0 chr4 133498645 133498728 -22131392 + B2_Mm2 SINE B2 29 111 -84 1 1603 359 240 19 9 chr4 133498728 133498833 -22131287 + MYSERV6-int LTR ERVK 7396 7501 -1458 1 1603 1560 165 4 0 chr4 133498848 133499097 -22131023 + RMER19B LTR ERVK 1 250 -652 1 1603 1447 101 9 14 chr4 133499097 133499317 -22130803 + L1_Mus3 LINE L1 6414 6632 -6 1 1603 1263 24 148 12 chr4 133499329 133499498 -22130622 + B2_Mm1a SINE B2 2 193 0 1 1603 1117 170 48 113 chr4 133499529 133499569 -22130551 + RMER19B LTR ERVK 225 264 -638 1 1603 924 80 280 0 chr4 133499569 133499587 -22130533 - B2_Mm1t SINE B2 0 193 176 1 1603 279 0 0 0 chr4 133499587 133499618 -22130502 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1603 924 80 280 0 chr4 133499618 133499749 -22130371 - B2_Mm1t SINE B2 -18 175 4 1 1603 1117 170 48 113 chr4 133499749 133500000 -22130120 + RMER19B LTR ERVK 265 497 -405 1 1603 2414 136 17 52 chr4 133500001 133500420 -22129700 + RMER19B LTR ERVK 499 902 0 1 1603 523 245 91 78 chr4 133500420 133500650 -22129470 + RLTR19-int LTR ERVK 2805 3037 -3100 2 1603 295 197 15 15 chr4 133500754 133500821 -22129299 + RLTR19-int LTR ERVK 2113 2179 -1059 3 1603 875 235 92 47 chr4 133500879 133501015 -22129105 + RLTR19-int LTR ERVK 3322 3456 -2681 3 1603 1115 84 7 0 chr4 133501015 133501158 -22128962 + B1_Mus2 SINE Alu 4 147 0 4 1603 875 235 92 47 chr4 133501158 133501468 -22128652 + RLTR19-int LTR ERVK 3457 3788 -2349 3 1603 243 0 0 0 chr4 133501482 133501509 -22128611 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 5 1603 711 177 23 8 chr4 133501509 133501633 -22128487 - B1_Mus2 SINE Alu -12 135 9 6 1603 1156 75 0 0 chr4 133501633 133501779 -22128341 + B1_Mus2 SINE Alu 2 147 0 7 1603 26 30 0 0 chr4 133501849 133501882 -22128238 + AT_rich Low_complexity Low_complexity 1 33 0 8 1603 785 153 73 7 chr4 133501903 133502054 -22128066 + RMER4B LTR ERVK 17 177 -408 9 1603 830 232 35 15 chr4 133502101 133502367 -22127753 + RMER4B LTR ERVK 269 573 -12 9 1603 409 248 124 88 chr4 133502409 133502626 -22127494 + RMER17C-int LTR ERVK 2610 2834 -404 1 1603 198 0 0 0 chr4 133502671 133502693 -22127427 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 1 1603 1010 209 45 121 chr4 133502693 133503025 -22127095 + RLTR19-int LTR ERVK 4070 4376 -1761 3 1603 1067 109 7 0 chr4 133503427 133503574 -22126546 - B1_Mus1 SINE Alu 0 148 1 1 1603 1127 30 0 8 chr4 133504227 133504360 -22125760 + B1_Mus2 SINE Alu 5 136 -11 1 1603 270 0 0 0 chr4 133504360 133504390 -22125730 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1603 356 289 38 19 chr4 133505040 133505146 -22124974 + PB1D10 SINE Alu 1 108 -9 1 1603 914 136 13 13 chr4 133505164 133505313 -22124807 + B1_Mur4 SINE Alu 2 150 0 1 1603 221 300 24 48 chr4 133505402 133505486 -22124634 - ID4 SINE ID 0 83 2 1 1603 1398 28 60 33 chr4 133505769 133505803 -22124317 - B2_Mm1a SINE B2 -4 189 161 1 1603 495 0 0 0 chr4 133505803 133505858 -22124262 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1 1603 1398 28 60 33 chr4 133505858 133506007 -22124113 - B2_Mm1a SINE B2 -33 160 1 1 1603 1616 37 0 20 chr4 133506021 133506216 -22123904 - B2_Mm1t SINE B2 -2 191 1 2 1603 3264 162 154 95 chr4 133506216 133507049 -22123071 - RMER19B LTR ERVK -18 884 3 2 1603 1206 211 78 110 chr4 133507582 133507954 -22122166 - ORR1D2 LTR MaLR 0 370 11 2 1603 204 125 0 0 chr4 133508015 133508047 -22122073 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1603 1186 68 0 0 chr4 133508047 133508194 -22121926 - B1_Mus2 SINE Alu 0 147 1 2 1603 1551 166 248 45 chr4 133508196 133508521 -22121599 - RLTR12A LTR ERVK -48 520 133 2 1603 1498 39 50 0 chr4 133508521 133508702 -22121418 - B2_Mm2 SINE B2 -5 190 1 2 1603 1551 78 0 88 chr4 133508702 133508809 -22121311 - RLTR12A LTR ERVK -436 132 31 2 1603 900 172 0 0 chr4 133508911 133509056 -22121064 - B1_Mus2 SINE Alu -2 145 1 2 1603 396 331 57 7 chr4 133509059 133509199 -22120921 - B1F SINE Alu 0 149 3 2 1603 221 275 258 21 chr4 133509206 133509299 -22120821 - PB1D10 SINE Alu -1 116 2 2 1603 3083 163 110 28 chr4 133509308 133510242 -22119878 - RLTR13D1 LTR ERVK 0 1023 1 3 1603 915 149 62 269 chr4 133510323 133510425 -22119695 - MT2B LTR ERVL -14 587 436 3 1603 564 15 0 0 chr4 133510425 133510490 -22119630 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 3 1603 915 186 55 25 chr4 133510490 133510643 -22119477 - MT2B LTR ERVL -58 543 383 3 1603 440 152 194 11 chr4 133510666 133510759 -22119361 + RMER19B LTR ERVK 308 417 -485 3 1603 942 50 17 0 chr4 133510765 133510885 -22119235 + B1_Mm SINE Alu 21 142 -5 3 1603 221 207 186 17 chr4 133511018 133511077 -22119043 - B1F1 SINE Alu -80 69 1 3 1603 428 211 65 28 chr4 133511109 133511216 -22118904 + B1F1 SINE Alu 1 111 -38 3 1603 277 295 64 0 chr4 133511295 133511373 -22118747 - RSINE1 SINE B4 -49 116 34 3 1603 778 113 29 171 chr4 133511668 133511746 -22118374 + B1_Mus2 SINE Alu 1 56 -91 3 1603 1181 92 110 0 chr4 133511746 133511919 -22118201 - B2_Mm1t SINE B2 -1 192 1 3 1603 778 113 29 171 chr4 133511919 133512010 -22118110 + B1_Mus2 SINE Alu 57 146 -1 3 1603 526 195 178 0 chr4 133512122 133512240 -22117880 - B1_Mus1 SINE Alu -8 140 2 4 1603 665 249 44 33 chr4 133512250 133512340 -22117780 - B2_Mm2 SINE B2 -10 185 93 4 1603 2689 98 55 5 chr4 133512340 133512761 -22117359 + BGLII_A LTR ERVK 2 443 -2 4 1603 665 249 44 33 chr4 133512761 133512853 -22117267 - B2_Mm2 SINE B2 -103 92 1 4 1603 23 68 0 0 chr4 133512853 133512897 -22117223 + AT_rich Low_complexity Low_complexity 1 44 0 4 1603 1205 34 20 7 chr4 133512932 133513078 -22117042 + B1_Mus1 SINE Alu 1 148 0 4 1603 198 0 0 0 chr4 133513080 133513102 -22117018 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1603 283 234 0 105 chr4 133513149 133513254 -22116866 - PB1D9 SINE Alu 0 120 27 4 1603 275 288 116 43 chr4 133513405 133513417 -22116703 + ID_B1 SINE B4 72 139 -85 4 1603 607 167 139 9 chr4 133513417 133513532 -22116588 + B1_Mus2 SINE Alu 3 132 -15 4 1603 275 288 116 43 chr4 133513532 133513543 -22116577 + ID_B1 SINE B4 140 219 -5 4 1603 194 207 17 0 chr4 133513761 133513819 -22116301 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1603 297 225 12 48 chr4 133514338 133514422 -22115698 - PB1D9 SINE Alu -4 116 36 5 1603 8722 122 45 4 chr4 133514486 133515375 -22114745 - Lx2 LINE L1 0 6997 6080 5 1603 4421 171 55 16 chr4 133515375 133516248 -22113872 - RMER13B LTR ERVK 0 908 2 5 1603 8722 125 42 5 chr4 133516248 133516764 -22113356 - Lx2 LINE L1 -918 6079 5538 5 1603 261 327 75 0 chr4 133516854 133516961 -22113159 + PB1D7 SINE Alu 1 115 -5 5 1603 241 266 62 35 chr4 133516964 133517077 -22113043 + PB1D10 SINE Alu 1 116 -1 5 1603 419 229 62 0 chr4 133517084 133517180 -22112940 + B1F SINE Alu 4 105 -44 5 1603 378 245 62 26 chr4 133517193 133517306 -22112814 - RLTR23 LTR ERV1 0 430 314 5 1603 317 182 246 40 chr4 133517655 133517781 -22112339 + L1M4 LINE L1 5188 5339 -807 5 1603 792 172 13 33 chr4 133517796 133517946 -22112174 + B1_Mur3 SINE Alu 3 149 0 5 1603 309 154 0 0 chr4 133517947 133517986 -22112134 + A-rich Low_complexity Low_complexity 1 39 0 5 1603 811 126 134 0 chr4 133517986 133518113 -22112007 + B1_Mus1 SINE Alu 2 145 -3 6 1603 309 154 0 0 chr4 133518113 133518138 -22111982 + A-rich Low_complexity Low_complexity 40 64 0 6 1603 313 289 137 42 chr4 133518158 133518315 -22111805 + B4A SINE B4 7 171 -121 6 1603 377 278 171 14 chr4 133518428 133518707 -22111413 + L1M4 LINE L1 5339 5662 -502 5 1603 602 206 63 8 chr4 133519163 133519290 -22110830 - URR1B DNA MER1_type -33 192 59 6 1603 498 246 38 23 chr4 133519407 133519540 -22110580 + B1_Mur4 SINE Alu 3 137 -13 6 1603 263 200 115 16 chr4 133519612 133519673 -22110447 - B3 SINE B2 -19 197 131 6 1603 278 304 70 18 chr4 133519778 133519892 -22110228 - ID_B1 SINE B4 -1 223 104 6 1603 189 107 0 0 chr4 133523411 133523439 -22106681 + (CTCG)n Simple_repeat Simple_repeat 4 31 0 6 1603 235 203 13 115 chr4 133525791 133525869 -22104251 + LTR50 LTR ERVL 469 538 -257 6 1603 228 67 0 0 chr4 133526849 133526879 -22103241 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1603 366 298 106 45 chr4 133527383 133527562 -22102558 + MIRb SINE MIR 39 228 -40 7 1603 1031 69 0 0 chr4 133528372 133528502 -22101618 - B1_Mus2 SINE Alu -17 130 1 7 1603 550 145 188 0 chr4 133528502 133528619 -22101501 + B1_Mur4 SINE Alu 12 150 0 7 1603 282 270 76 48 chr4 133528714 133528819 -22101301 + B4A SINE B4 165 272 -20 7 1603 399 263 76 106 chr4 133528793 133528925 -22101195 + B4 SINE B4 52 179 -113 7 1603 704 153 12 165 chr4 133528846 133529010 -22101110 + B1_Mur2 SINE Alu 10 148 -1 7 1603 318 229 49 0 chr4 133529040 133529101 -22101019 + RSINE1 SINE B4 83 146 -19 7 1603 276 30 0 0 chr4 133529105 133529138 -22100982 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1603 920 133 0 29 chr4 133529273 133529412 -22100708 + B1_Mur4 SINE Alu 7 141 -9 7 1603 1309 82 22 0 chr4 133529447 133529630 -22100490 - B2_Mm1t SINE B2 -5 188 2 7 1603 617 279 47 43 chr4 133529630 133529840 -22100280 - B3A SINE B2 0 216 7 8 1603 1190 68 0 0 chr4 133530101 133530247 -22099873 - B1_Mus2 SINE Alu 0 147 2 8 1603 322 239 61 55 chr4 133530270 133530401 -22099719 - B1_Mus2 SINE Alu -3 144 1 8 1603 574 280 39 77 chr4 133530410 133530461 -22099659 - B3 SINE B2 -12 183 138 8 1603 237 65 0 0 chr4 133530461 133530492 -22099628 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1603 574 274 45 13 chr4 133530492 133530633 -22099487 - B3 SINE B2 -70 146 3 8 1603 260 225 88 0 chr4 133530635 133530715 -22099405 + MIRb SINE MIR 120 206 -62 8 1603 321 263 74 0 chr4 133530930 133531025 -22099095 - MIR3 SINE MIR -31 177 76 8 1603 543 235 83 0 chr4 133531089 133531221 -22098899 - B1_Mur3 SINE Alu -5 144 2 8 1603 429 260 53 61 chr4 133531440 133531571 -22098549 + B1F1 SINE Alu 15 144 -5 8 1603 1523 62 0 5 chr4 133531657 133531850 -22098270 - B2_Mm2 SINE B2 -2 193 2 8 1603 1143 76 7 0 chr4 133531861 133532006 -22098114 - B1_Mus2 SINE Alu 0 147 2 9 1603 671 235 61 11 chr4 133532009 133532190 -22097930 - B3A SINE B2 -7 191 2 9 1603 364 255 8 68 chr4 133532272 133532390 -22097730 - PB1D9 SINE Alu -5 115 5 9 1603 309 279 57 16 chr4 133532459 133532583 -22097537 - ID_B1 SINE B4 -6 218 90 9 1603 251 292 96 0 chr4 133532903 133532988 -22097132 - B3A SINE B2 -107 109 2 9 1603 334 264 192 38 chr4 133533021 133533194 -22096926 + B3A SINE B2 13 208 -8 9 1603 1198 48 7 0 chr4 133533194 133533340 -22096780 + B1_Mus2 SINE Alu 1 147 0 9 1603 412 285 55 14 chr4 133533706 133533852 -22096268 + L2a LINE L2 3265 3416 -10 9 1603 410 303 127 25 chr4 133533898 133534135 -22095985 + Tigger15a DNA TcMar 62 322 -393 9 1603 1145 52 0 0 chr4 133534501 133534636 -22095484 + B1_Mus2 SINE Alu 2 136 -11 9 1603 260 0 57 0 chr4 133534636 133534671 -22095449 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1603 228 331 36 58 chr4 133534696 133534834 -22095286 + Charlie4z DNA MER1_type 2 136 -31 1 1603 198 232 221 48 chr4 133534878 133534982 -22095138 + MIR SINE MIR 27 148 -114 1 1603 1046 52 30 0 chr4 133535202 133535336 -22094784 + B1_Mus1 SINE Alu 2 139 -9 1 1603 273 29 0 0 chr4 133535348 133535382 -22094738 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1 1603 286 235 118 0 chr4 133535543 133535611 -22094509 - PB1D9 SINE Alu -40 80 5 1 1603 233 305 152 0 chr4 133535623 133535741 -22094379 + MIRb SINE MIR 132 267 -1 1 1603 672 210 79 14 chr4 133535770 133535910 -22094210 + RSINE1 SINE B4 3 151 -14 1 1603 537 266 42 0 chr4 133536395 133536538 -22093582 - B1_Mur1 SINE Alu 0 149 1 1 1603 193 276 189 9 chr4 133536692 133536798 -22093322 + MIR SINE MIR 2 126 -136 1 1603 448 210 33 44 chr4 133537024 133537168 -22092952 - B1_Mur1 SINE Alu -2 147 8 1 1603 540 208 38 0 chr4 133537201 133537307 -22092813 - B1_Mur3 SINE Alu -37 112 3 1 1603 317 233 32 85 chr4 133537228 133537322 -22092798 - MT2B LTR ERVL -362 239 151 1 1603 663 281 109 19 chr4 133537675 133537940 -22092180 - B4 SINE B4 -2 290 2 1 1603 864 148 7 32 chr4 133538047 133538201 -22091919 - B1_Mur4 SINE Alu 0 150 1 1 1603 352 300 3 20 chr4 133539250 133539370 -22090750 + ID4_ SINE ID 6 119 -33 1 1603 194 208 19 0 chr4 133539529 133539582 -22090538 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1603 1693 11 5 5 chr4 133539736 133539929 -22090191 + B2_Mm1a SINE B2 1 193 0 1 1603 419 226 25 78 chr4 133539944 133540072 -22090048 + RSINE1 SINE B4 1 111 -181 1 1603 892 217 64 5 chr4 133540391 133540595 -22089525 + B3 SINE B2 1 216 0 1 1603 387 198 29 0 chr4 133540646 133540759 -22089361 + PB1D10 SINE Alu 2 120 0 1 1603 234 0 0 0 chr4 133540759 133540785 -22089335 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1603 244 337 0 24 chr4 133541534 133541619 -22088501 + BC1_Mm scRNA scRNA 23 105 -47 1 1603 1127 89 0 0 chr4 133542016 133542162 -22087958 - B1_Mus2 SINE Alu 0 147 2 1 1603 548 222 97 7 chr4 133542166 133542311 -22087809 - B3 SINE B2 -6 210 53 1 1603 660 221 64 0 chr4 133542347 133542487 -22087633 - RSINE1 SINE B4 -14 151 3 1 1603 227 329 0 0 chr4 133542505 133542578 -22087542 - ID4_ SINE ID -6 77 5 1 1603 1232 48 0 0 chr4 133542607 133542754 -22087366 + B1_Mm SINE Alu 1 147 0 1 1603 512 279 54 0 chr4 133542781 133542910 -22087210 - B3 SINE B2 -79 137 2 1 1603 327 308 58 0 chr4 133542922 133543026 -22087094 - PB1D7 SINE Alu -8 112 3 1 1603 1150 211 5 0 chr4 133543038 133543251 -22086869 - B3 SINE B2 -1 215 2 1 1603 946 75 104 8 chr4 133543403 133543537 -22086583 - B1_Mm SINE Alu 0 147 1 1 1603 4280 79 42 2 chr4 133543589 133544158 -22085962 + L1_Mus3 LINE L1 6044 6635 -3 1 1603 1259 41 0 0 chr4 133544180 133544327 -22085793 + B1_Mus2 SINE Alu 1 147 0 1 1603 225 233 113 98 chr4 133544336 133544469 -22085651 + B4A SINE B4 8 142 -150 1 1603 367 88 396 0 chr4 133545328 133545429 -22084691 + B2_Mm2 SINE B2 48 188 -7 1 1603 226 258 57 57 chr4 133545624 133545694 -22084426 - ID4_ SINE ID -7 76 7 1 1603 280 235 242 10 chr4 133546380 133546479 -22083641 - PB1 SINE Alu -5 122 1 1 1603 196 247 228 37 chr4 133546538 133546646 -22083474 + MIRm SINE MIR 60 187 -89 1 1603 1332 59 18 0 chr4 133547790 133547960 -22082160 - B2_Mm2 SINE B2 -14 181 9 1 1603 449 259 37 0 chr4 133547982 133548090 -22082030 - PB1D9 SINE Alu 0 120 9 1 1603 202 152 21 21 chr4 133548134 133548181 -22081939 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1603 231 36 0 0 chr4 133548826 133548854 -22081266 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1603 1221 47 0 0 chr4 133548854 133549002 -22081118 - B1_Mus1 SINE Alu 0 148 1 1 1603 190 322 43 17 chr4 133549747 133549864 -22080256 + MIRb SINE MIR 2 121 -147 1 1603 311 242 172 0 chr4 133550401 133550500 -22079620 + PB1D10 SINE Alu 2 117 0 1 1603 388 274 57 36 chr4 133550527 133550543 -22079577 + B1F1 SINE Alu 3 144 -4 1 1603 456 261 8 32 chr4 133550543 133550666 -22079454 + ID_B1 SINE B4 100 219 -5 1 1603 225 236 67 3 chr4 133550724 133550807 -22079313 + MIR SINE MIR 77 168 -100 1 1603 284 247 27 0 chr4 133551048 133551121 -22078999 + PB1D10 SINE Alu 30 104 -13 1 1603 660 144 89 22 chr4 133551147 133551282 -22078838 - B1_Mus2 SINE Alu -3 144 1 1 1603 496 236 192 27 chr4 133551319 133551506 -22078614 + ID_B1 SINE B4 4 221 -3 1 1603 1184 75 0 0 chr4 133551514 133551660 -22078460 + B1_Mus1 SINE Alu 3 148 0 1 1603 291 85 0 0 chr4 133551660 133551707 -22078413 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1603 553 231 50 36 chr4 133551715 133551854 -22078266 + B1_Mur1 SINE Alu 8 148 -1 1 1603 920 124 27 7 chr4 133551856 133552002 -22078118 + B1_Mur4 SINE Alu 1 149 -1 1 1603 319 380 61 34 chr4 133552124 133552271 -22077849 - RSINE1 SINE B4 0 165 15 1 1603 1057 71 43 0 chr4 133552524 133552665 -22077455 + B1_Mus2 SINE Alu 1 147 0 1 1603 39 0 0 0 chr4 133552665 133552704 -22077416 + AT_rich Low_complexity Low_complexity 1 39 0 1 1603 361 264 89 119 chr4 133552930 133553098 -22077022 + RSINE1 SINE B4 3 165 0 1 1603 259 337 0 0 chr4 133553388 133553480 -22076640 - L1_Mur3 LINE L1 -57 5823 5732 1 1603 1738 16 0 0 chr4 133553482 133553674 -22076446 - B2_Mm1a SINE B2 0 193 2 1 1603 319 275 202 11 chr4 133553800 133553980 -22076140 - L1P5 LINE L1 -521 5659 5448 1 1603 405 265 69 0 chr4 133554052 133554154 -22075966 - B3A SINE B2 -88 110 2 1 1603 289 268 56 0 chr4 133554342 133554413 -22075707 - RSINE1 SINE B4 0 165 91 1 1603 273 167 0 20 chr4 133554414 133554463 -22075657 + MurERV4_19-int LTR ERVK 5314 5361 -419 1 1603 268 237 37 62 chr4 133554493 133554574 -22075546 + RMER4A LTR ERVK 309 387 -79 1 1603 219 139 0 0 chr4 133554576 133554612 -22075508 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1603 1468 181 33 10 chr4 133554612 133554918 -22075202 + RLTR15 LTR ERVK 47 359 0 1 1603 422 291 0 0 chr4 133554918 133555002 -22075118 - RSINE1 SINE B4 -68 97 14 1 1603 945 216 98 0 chr4 133555601 133555805 -22074315 - URR1A DNA MER1_type 0 226 3 1 1603 1438 65 38 0 chr4 133557268 133557453 -22072667 + B2_Mm2 SINE B2 2 193 -2 1 1603 231 308 90 41 chr4 133557483 133557605 -22072515 + ID_B1 SINE B4 91 218 -6 1 1603 424 244 22 0 chr4 133557803 133557893 -22072227 + ID_B1 SINE B4 6 97 -127 1 1603 215 319 0 27 chr4 133557913 133557987 -22072133 + B1_Mur4 SINE Alu 79 150 0 1 1603 522 0 0 0 chr4 133558232 133558290 -22071830 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1603 339 218 0 129 chr4 133559798 133559914 -22070206 + PB1D7 SINE Alu 20 120 0 1 1603 269 229 100 0 chr4 133560703 133560773 -22069347 + ID4_ SINE ID 5 81 -2 1 1603 33 0 0 0 chr4 133561316 133561349 -22068771 + AT_rich Low_complexity Low_complexity 1 33 0 1 1604 1283 224 106 47 chr4 133562402 133562627 -22067493 - RMER6B LTR ERVK -10 451 206 1 1604 1276 73 90 0 chr4 133562627 133562804 -22067316 - B2_Mm1a SINE B2 0 193 1 1 1604 1283 224 106 47 chr4 133562804 133563004 -22067116 - RMER6B LTR ERVK -256 205 1 1 1604 286 104 42 0 chr4 133563087 133563135 -22066985 - B3A SINE B2 -146 52 3 1 1604 249 226 56 159 chr4 133563158 133563189 -22066931 - PB1D9 SINE Alu -7 113 88 1 1604 720 0 0 0 chr4 133563189 133563269 -22066851 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1 1604 249 226 56 159 chr4 133563269 133563363 -22066757 - PB1D9 SINE Alu -33 87 1 1 1604 570 127 182 0 chr4 133563389 133563499 -22066621 - B1_Mus2 SINE Alu 0 147 18 1 1604 212 212 56 101 chr4 133564137 133564226 -22065894 + PB1D9 SINE Alu 36 120 0 1 1604 467 238 93 65 chr4 133564339 133564471 -22065649 + B1_Mur1 SINE Alu 1 132 -17 1 1604 380 104 44 15 chr4 133564672 133564740 -22065380 + B2_Mm2 SINE B2 118 187 -8 1 1604 1536 47 11 0 chr4 133564792 133564983 -22065137 + B2_Mm1t SINE B2 1 193 0 1 1604 240 214 65 43 chr4 133565060 133565153 -22064967 + B1F1 SINE Alu 15 109 -40 1 1604 501 303 49 7 chr4 133565194 133565337 -22064783 + RSINE1 SINE B4 2 150 -15 1 1604 778 160 13 83 chr4 133565474 133565631 -22064489 - B1_Mur4 SINE Alu 0 150 5 1 1604 319 253 98 0 chr4 133565669 133565756 -22064364 - PB1D10 SINE Alu -10 107 13 1 1604 274 238 236 9 chr4 133566230 133566336 -22063784 + B1_Mus2 SINE Alu 3 132 -15 1 1604 296 299 50 30 chr4 133566409 133566422 -22063698 - ID_B1 SINE B4 -32 192 91 1 1604 346 238 23 35 chr4 133566422 133566509 -22063611 - PB1D10 SINE Alu -22 95 10 1 1604 219 308 49 49 chr4 133566643 133566682 -22063438 - ID_B1 SINE B4 -111 113 32 1 1604 245 163 23 0 chr4 133566682 133566725 -22063395 - ID2 SINE ID -9 74 31 1 1604 533 219 49 130 chr4 133566878 133566906 -22063214 + B4 SINE B4 67 166 -126 1 1604 1085 30 0 29 chr4 133566906 133567045 -22063075 + B1_Mus2 SINE Alu 13 147 0 1 1604 533 219 49 130 chr4 133567045 133567062 -22063058 + B4 SINE B4 167 235 -57 1 1604 188 336 40 72 chr4 133568819 133568944 -22061176 - L2a LINE L2 -272 3154 3034 1 1604 198 0 0 0 chr4 133569622 133569644 -22060476 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1604 21 0 0 0 chr4 133569891 133569912 -22060208 + AT_rich Low_complexity Low_complexity 1 21 0 2 1604 342 67 0 0 chr4 133570494 133570539 -22059581 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1604 426 192 14 0 chr4 133571117 133571190 -22058930 + MER20 DNA MER1_type 7 80 -139 2 1604 216 290 0 0 chr4 133571378 133571440 -22058680 + B1F SINE Alu 88 149 0 2 1604 536 185 18 142 chr4 133571824 133571993 -22058127 + B1_Mur1 SINE Alu 1 149 0 2 1604 182 150 25 0 chr4 133574848 133574888 -22055232 + C-rich Low_complexity Low_complexity 4 44 0 2 1604 495 0 0 0 chr4 133575130 133575185 -22054935 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1604 209 159 0 83 chr4 133575304 133575352 -22054768 + C-rich Low_complexity Low_complexity 3 46 0 2 1604 225 0 0 0 chr4 133576815 133576840 -22053280 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1604 363 298 10 19 chr4 133576896 133577004 -22053116 - PB1D7 SINE Alu -2 118 12 2 1604 21 0 0 0 chr4 133577026 133577047 -22053073 + AT_rich Low_complexity Low_complexity 1 21 0 2 1604 580 250 100 22 chr4 133577047 133577227 -22052893 - B3A SINE B2 -3 195 2 2 1604 233 315 88 72 chr4 133577377 133577558 -22052562 + YREP_Mm Unknown Unknown 107 290 -1522 2 1604 641 208 29 51 chr4 133577435 133577572 -22052548 - ID_B1 SINE B4 0 224 91 2 1604 291 297 128 56 chr4 133577586 133577782 -22052338 + MIR SINE MIR 19 228 -34 2 1604 247 272 0 165 chr4 133577818 133577915 -22052205 + ID4_ SINE ID 2 82 -1 2 1604 879 219 8 106 chr4 133577928 133578163 -22051957 + B3 SINE B2 5 216 0 2 1604 1029 103 7 0 chr4 133578315 133578461 -22051659 + B1_Mus1 SINE Alu 1 147 -1 2 1604 288 77 0 0 chr4 133578462 133578501 -22051619 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1604 721 234 0 0 chr4 133578648 133578789 -22051331 - B1F SINE Alu -7 142 2 2 1604 221 0 0 33 chr4 133578842 133578872 -22051248 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1604 1118 91 0 0 chr4 133578874 133579017 -22051103 - B1_Mm SINE Alu -3 144 2 2 1604 386 284 55 0 chr4 133579176 133579285 -22050835 + PB1D10 SINE Alu 3 117 0 2 1604 241 329 98 69 chr4 133579372 133579453 -22050667 + B4 SINE B4 21 101 -191 2 1604 2254 193 136 10 chr4 133579453 133579961 -22050159 + RMER15 LTR ERVL 2 573 -2 2 1604 241 329 98 69 chr4 133579961 133580052 -22050068 + B4 SINE B4 102 198 -94 2 1604 538 340 31 6 chr4 133580122 133580282 -22049838 + RSINE1 SINE B4 1 164 -1 2 1604 1227 54 0 0 chr4 133580318 133580465 -22049655 - B1_Mus1 SINE Alu 0 148 2 2 1604 439 188 267 0 chr4 133580505 133580606 -22049514 + B1_Mur4 SINE Alu 13 140 -10 2 1604 226 0 59 0 chr4 133580621 133580655 -22049465 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1604 902 152 0 20 chr4 133580665 133580813 -22049307 + B1_Mur2 SINE Alu 5 149 0 2 1604 230 385 12 0 chr4 133580828 133580911 -22049209 + RSINE1 SINE B4 2 85 -80 2 1604 315 122 0 0 chr4 133580946 133580995 -22049125 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1604 407 318 29 36 chr4 133581049 133581186 -22048934 - L2b LINE L2 -2 3373 3238 2 1604 601 167 26 26 chr4 133581259 133581376 -22048744 - PB1D9 SINE Alu -3 117 1 2 1604 760 196 0 11 chr4 133581464 133581645 -22048475 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1604 230 188 21 0 chr4 133582340 133582388 -22047732 - Arthur1 DNA Tip100 -952 2995 2947 2 1604 427 299 170 4 chr4 133582501 133582760 -22047360 - HAL1 LINE L1 -159 2348 2047 2 1604 22 56 0 0 chr4 133582951 133582987 -22047133 + AT_rich Low_complexity Low_complexity 1 36 0 2 1604 660 171 62 35 chr4 133583055 133583200 -22046920 - B1_Mur4 SINE Alu -1 149 1 2 1604 229 328 164 0 chr4 133583200 133583267 -22046853 - PB1D9 SINE Alu -42 78 1 2 1604 680 263 91 15 chr4 133583366 133583563 -22046557 + B4A SINE B4 3 214 -78 2 1604 534 250 0 0 chr4 133583580 133583680 -22046440 + B1_Mur1 SINE Alu 34 133 -16 2 1604 359 325 46 75 chr4 133583680 133583753 -22046367 + B4 SINE B4 119 286 -6 2 1604 208 220 40 0 chr4 133583753 133583803 -22046317 + (CAGA)n Simple_repeat Simple_repeat 3 54 0 2 1604 750 139 42 35 chr4 133584202 133584344 -22045776 + B1_Mur2 SINE Alu 6 148 -1 2 1604 788 203 7 0 chr4 133584516 133584659 -22045461 + B3A SINE B2 5 148 -50 2 1604 2664 62 27 0 chr4 133584659 133584996 -22045124 + ORR1A1 LTR MaLR 1 346 0 2 1604 315 0 0 0 chr4 133585024 133585059 -22045061 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1604 335 261 45 0 chr4 133585139 133585227 -22044893 + PB1D10 SINE Alu 26 117 0 2 1604 195 294 39 19 chr4 133585321 133585373 -22044747 - MIR SINE MIR -157 105 53 2 1604 1463 202 95 20 chr4 133585409 133585578 -22044542 - ORR1D1 LTR MaLR 0 374 177 2 1604 1241 61 0 0 chr4 133585578 133585725 -22044395 + B1_Mus2 SINE Alu 1 147 0 2 1604 1463 202 95 20 chr4 133585725 133585903 -22044217 - ORR1D1 LTR MaLR -198 176 2 2 1604 512 186 9 0 chr4 133586096 133586209 -22043911 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1604 330 115 0 103 chr4 133586225 133586293 -22043827 - B1_Mm SINE Alu 0 147 87 2 1604 309 229 50 125 chr4 133586305 133586334 -22043786 - PB1D7 SINE Alu 0 120 105 2 1604 1260 54 0 0 chr4 133586334 133586481 -22043639 - B1_Mm SINE Alu 0 147 1 2 1604 1290 108 17 0 chr4 133586481 133586657 -22043463 - B2_Mm2 SINE B2 -16 179 1 2 1604 519 157 45 0 chr4 133586657 133586746 -22043374 - B1_Mus1 SINE Alu -45 103 11 2 1604 268 218 55 0 chr4 133586854 133586909 -22043211 - RMER15 LTR ERVL 0 575 518 2 1604 2047 182 52 37 chr4 133586934 133587245 -22042875 - MTD LTR MaLR -8 411 103 2 1604 3121 113 7 11 chr4 133587245 133587683 -22042437 - RLTR10C LTR ERVK 0 436 1 2 1604 2047 182 52 37 chr4 133587683 133587756 -22042364 - MTD LTR MaLR -317 102 19 2 1604 216 0 0 0 chr4 133587756 133587780 -22042340 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1604 2047 182 52 37 chr4 133587780 133587799 -22042321 - MTD LTR MaLR -401 18 1 2 1604 469 243 19 0 chr4 133588655 133588758 -22041362 - ID_B1 SINE B4 -1 223 119 2 1604 375 256 192 0 chr4 133588758 133588780 -22041340 - B1F SINE Alu 0 149 1 2 1604 513 244 32 0 chr4 133588862 133588985 -22041135 - B1_Mus1 SINE Alu -21 127 1 2 1604 577 230 142 51 chr4 133589002 133589199 -22040921 - B3 SINE B2 0 216 2 2 1604 318 176 12 86 chr4 133589204 133589285 -22040835 - PB1D7 SINE Alu 0 120 46 2 1604 318 277 82 62 chr4 133589288 133589401 -22040719 - L1MD LINE L1 -2929 3217 3101 2 1604 1239 55 0 0 chr4 133589401 133589546 -22040574 - B1_Mus2 SINE Alu 0 147 3 2 1604 318 277 82 62 chr4 133589546 133589578 -22040542 - L1MD LINE L1 -3046 3100 3069 2 1604 941 147 229 0 chr4 133589583 133589753 -22040367 - B3 SINE B2 -6 210 2 2 1604 271 226 0 0 chr4 133589902 133589955 -22040165 - B1F SINE Alu -93 56 4 2 1604 668 205 34 0 chr4 133590377 133590494 -22039626 + RSINE1 SINE B4 11 131 -34 2 1604 461 17 17 0 chr4 133590513 133590571 -22039549 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1604 195 42 0 0 chr4 133591274 133591298 -22038822 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 2 1604 244 216 145 95 chr4 133592112 133592291 -22037829 - L2a LINE L2 0 3426 3239 2 1604 1656 21 21 0 chr4 133592358 133592547 -22037573 - B2_Mm1a SINE B2 0 193 1 2 1604 1168 27 0 13 chr4 133592579 133592729 -22037391 + (GAA)n Simple_repeat Simple_repeat 1 148 0 2 1604 216 0 0 0 chr4 133593188 133593212 -22036908 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1604 333 0 0 0 chr4 133593212 133593248 -22036872 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1604 351 0 0 0 chr4 133593427 133593466 -22036654 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1604 343 253 294 18 chr4 133593478 133593695 -22036425 - B4A SINE B4 -8 284 8 2 1604 306 0 0 0 chr4 133593843 133593877 -22036243 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1604 285 29 0 0 chr4 133593877 133593910 -22036210 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1604 1096 255 83 26 chr4 133593947 133594249 -22035871 + MTD LTR MaLR 2 320 -99 2 1604 1567 239 135 86 chr4 133594259 133594441 -22035679 - RMER19A LTR ERVK -11 600 403 2 1604 261 0 0 0 chr4 133594441 133594470 -22035650 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2 1604 1588 214 131 13 chr4 133594470 133594859 -22035261 - RMER19A LTR ERVK -302 435 1 2 1604 939 215 11 11 chr4 133594959 133595142 -22034978 - B3 SINE B2 0 216 34 2 1604 927 237 53 11 chr4 133595149 133595430 -22034690 - L1MC4 LINE L1 -512 7530 7238 2 1604 234 0 0 0 chr4 133595440 133595466 -22034654 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1604 794 151 8 0 chr4 133595471 133595590 -22034530 - B1_Mur3 SINE Alu -29 120 1 2 1604 236 312 42 99 chr4 133595657 133595849 -22034271 - B3A SINE B2 -16 182 2 2 1604 972 217 61 108 chr4 133595851 133596113 -22034007 - MTD LTR MaLR 0 419 172 2 1604 231 36 0 0 chr4 133596113 133596141 -22033979 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2 1604 972 217 61 108 chr4 133596141 133596157 -22033963 - MTD LTR MaLR -248 171 155 2 1604 683 181 128 0 chr4 133596189 133596322 -22033798 + B1_Mur4 SINE Alu 1 150 0 2 1604 34 0 0 0 chr4 133596322 133596356 -22033764 + AT_rich Low_complexity Low_complexity 1 34 0 2 1604 516 198 18 36 chr4 133596358 133596468 -22033652 - MTD LTR MaLR -301 120 13 2 1604 1165 68 7 0 chr4 133596639 133596786 -22033334 - B1_Mus1 SINE Alu 0 148 1 2 1604 753 217 47 6 chr4 133596808 133596982 -22033138 - B3 SINE B2 -5 193 1 2 1604 189 237 0 0 chr4 133597022 133597081 -22033039 + C-rich Low_complexity Low_complexity 3 61 0 2 1604 999 94 137 29 chr4 133597244 133597419 -22032701 - B2_Mm2 SINE B2 -1 194 1 2 1604 279 128 24 49 chr4 133598211 133598293 -22031827 + T-rich Low_complexity Low_complexity 3 82 0 2 1604 1057 75 7 40 chr4 133598296 133598448 -22031672 - B1_Mus2 SINE Alu 0 147 1 2 1604 708 168 0 60 chr4 133598448 133598570 -22031550 + B1_Mur3 SINE Alu 25 140 -9 2 1604 252 0 0 0 chr4 133598570 133598598 -22031522 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1604 329 314 0 0 chr4 133598627 133598713 -22031407 - PB1D10 SINE Alu -29 88 3 3 1604 204 119 33 17 chr4 133599274 133599334 -22030786 + (CTGGGG)n Simple_repeat Simple_repeat 1 61 0 3 1604 1454 68 15 15 chr4 133599384 133599579 -22030541 + B2_Mm2 SINE B2 1 195 0 3 1604 1315 77 33 0 chr4 133599584 133599765 -22030355 + B2_Mm2 SINE B2 2 188 -7 3 1604 451 313 15 37 chr4 133599841 133599977 -22030143 - RSINE1 SINE B4 -3 162 30 3 1604 345 140 0 0 chr4 133599978 133600035 -22030085 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1604 412 221 13 0 chr4 133600325 133600402 -22029718 - B3 SINE B2 0 216 139 3 1604 611 231 29 22 chr4 133600816 133600953 -22029167 - B3 SINE B2 -74 142 5 3 1604 261 321 37 19 chr4 133601179 133601287 -22028833 - PB1D9 SINE Alu -2 118 9 3 1604 284 253 0 44 chr4 133601365 133601456 -22028664 - B3 SINE B2 0 216 130 3 1604 286 178 200 53 chr4 133601479 133601574 -22028546 + PB1D9 SINE Alu 1 109 -11 3 1604 941 218 45 10 chr4 133601603 133601802 -22028318 + B3 SINE B2 3 208 -8 3 1604 521 15 15 0 chr4 133601813 133601879 -22028241 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3 1604 1018 153 0 26 chr4 133601943 133602097 -22028023 - B1_Mur4 SINE Alu 0 150 1 3 1604 273 225 90 0 chr4 133602129 133602218 -22027902 - L1M4 LINE L1 -2467 3679 3583 3 1604 186 111 0 0 chr4 133602246 133602268 -22027852 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1604 1235 61 0 0 chr4 133602268 133602416 -22027704 + B1_Mus1 SINE Alu 1 148 0 3 1604 186 111 0 0 chr4 133602416 133602429 -22027691 + (A)n Simple_repeat Simple_repeat 1 13 0 3 1604 1230 48 0 0 chr4 133602547 133602693 -22027427 + B1_Mus2 SINE Alu 2 147 0 3 1604 242 209 83 104 chr4 133602701 133602797 -22027323 - MLT1H-int LTR MaLR -520 889 796 3 1604 495 309 16 52 chr4 133603227 133603418 -22026702 + B4A SINE B4 109 292 0 3 1604 535 208 104 59 chr4 133604449 133604619 -22025501 - B3A SINE B2 0 198 42 3 1604 287 104 0 20 chr4 133604655 133604704 -22025416 + (TCC)n Simple_repeat Simple_repeat 1 48 0 3 1604 266 122 0 0 chr4 133604728 133604769 -22025351 - PB1D10 SINE Alu -34 83 43 3 1604 225 234 94 0 chr4 133604729 133604793 -22025327 - 4.5SRNA scRNA scRNA -14 80 11 3 1604 229 356 98 58 chr4 133604888 133605061 -22025059 + MIRb SINE MIR 66 245 -23 3 1604 536 195 213 39 chr4 133605687 133605842 -22024278 + B3A SINE B2 1 182 -16 3 1604 462 236 43 111 chr4 133605985 133606038 -22024082 + MT2B LTR ERVL 107 148 -453 3 1604 764 147 0 57 chr4 133606038 133606161 -22023959 + B1_Mus1 SINE Alu 2 117 -31 3 1604 29 0 0 0 chr4 133606181 133606210 -22023910 + AT_rich Low_complexity Low_complexity 1 29 0 3 1604 312 267 35 79 chr4 133606227 133606302 -22023818 + PB1D10 SINE Alu 9 77 -40 3 1604 2413 154 180 6 chr4 133606302 133606792 -22023328 + RMER15 LTR ERVL 1 575 0 3 1604 312 267 35 79 chr4 133606792 133606830 -22023290 + PB1D10 SINE Alu 78 117 0 3 1604 594 176 114 0 chr4 133606833 133606958 -22023162 + B1_Mur1 SINE Alu 1 141 -8 3 1604 226 311 88 56 chr4 133606958 133606973 -22023147 + B4 SINE B4 116 232 -60 3 1604 372 260 219 0 chr4 133606973 133607069 -22023051 + B4A SINE B4 2 118 -174 3 1604 335 175 0 0 chr4 133607071 133607089 -22023031 + HAL1-3A_ME LINE L1 1956 1973 -885 3 1604 643 266 52 6 chr4 133607089 133607263 -22022857 + B3A SINE B2 1 182 -16 3 1604 335 175 0 0 chr4 133607263 133607301 -22022819 + HAL1-3A_ME LINE L1 1974 2011 -847 3 1604 222 37 0 0 chr4 133607365 133607392 -22022728 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1604 226 319 167 0 chr4 133607448 133607520 -22022600 + RSINE1 SINE B4 80 163 -2 3 1604 230 254 31 31 chr4 133607521 133607586 -22022534 + (CATG)n Simple_repeat Simple_repeat 3 67 0 3 1604 366 306 86 12 chr4 133607825 133607987 -22022133 + MIRb SINE MIR 87 260 -8 3 1604 409 260 133 8 chr4 133608154 133608282 -22021838 + B1F SINE Alu 3 146 -3 3 1604 309 261 68 0 chr4 133608367 133608455 -22021665 + PB1D10 SINE Alu 24 117 0 3 1604 276 232 112 31 chr4 133609213 133609311 -22020809 + RLTR25B LTR ERVK 393 498 -530 3 1604 493 121 72 0 chr4 133609253 133609336 -22020784 + B1_Mur3 SINE Alu 39 127 -22 3 1604 486 46 0 0 chr4 133609336 133609401 -22020719 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1604 222 283 48 121 chr4 133609454 133609619 -22020501 - ID_B1 SINE B4 -71 153 1 3 1604 307 215 76 43 chr4 133609625 133609742 -22020378 - MIRm SINE MIR -126 150 32 3 1604 599 243 13 60 chr4 133610709 133610858 -22019262 - RSINE1 SINE B4 -14 151 10 3 1604 22 0 0 0 chr4 133610870 133610892 -22019228 + AT_rich Low_complexity Low_complexity 1 22 0 3 1604 593 252 0 30 chr4 133610900 133611031 -22019089 - ID_B1 SINE B4 -5 219 93 3 1604 505 278 20 20 chr4 133611031 133611042 -22019078 - B1F SINE Alu -1 143 2 3 1604 212 310 97 29 chr4 133611123 133611226 -22018894 + L2 LINE L2 2332 2441 -978 3 1604 197 154 77 0 chr4 133611298 133611337 -22018783 - MIRm SINE MIR -138 138 97 3 1604 429 287 26 17 chr4 133612269 133612386 -22017734 + PB1D7 SINE Alu 3 120 0 3 1604 820 199 0 7 chr4 133612387 133612529 -22017591 + B1_Mur2 SINE Alu 4 144 -5 3 1604 183 361 60 34 chr4 133612578 133612727 -22017393 - MIRc SINE MIR -114 154 2 3 1604 273 314 132 39 chr4 133612957 133613086 -22017034 - MER5A DNA MER1_type -36 153 13 3 1604 267 114 0 0 chr4 133613575 133613619 -22016501 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1604 1124 52 0 7 chr4 133613675 133613812 -22016308 + B1_Mm SINE Alu 1 136 -11 3 1604 216 0 0 0 chr4 133613812 133613836 -22016284 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 3 1604 209 299 58 0 chr4 133614084 133614171 -22015949 + MIRb SINE MIR 47 138 -130 3 1604 1322 62 101 11 chr4 133615506 133615658 -22014462 + B2_Mm2 SINE B2 1 152 -43 3 1604 252 0 0 0 chr4 133615658 133615686 -22014434 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1604 1322 62 101 11 chr4 133615686 133615711 -22014409 + B2_Mm2 SINE B2 153 193 -2 3 1604 432 0 0 0 chr4 133617011 133617059 -22013061 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1604 275 270 13 51 chr4 133617076 133617154 -22012966 - PB1D10 SINE Alu -30 87 13 3 1604 363 352 62 0 chr4 133617455 133617617 -22012503 - MIRb SINE MIR -32 236 65 3 1604 184 261 22 0 chr4 133617745 133617791 -22012329 + MIR SINE MIR 74 120 -88 3 1604 353 348 67 6 chr4 133618551 133618716 -22011404 + MIRb SINE MIR 81 255 -13 3 1604 231 36 0 0 chr4 133618905 133618933 -22011187 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1604 189 0 0 0 chr4 133618948 133618969 -22011151 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1604 387 0 0 0 chr4 133619014 133619057 -22011063 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1604 632 246 41 41 chr4 133619527 133619722 -22010398 + B3A SINE B2 4 198 0 3 1604 659 159 167 0 chr4 133620112 133620238 -22009882 + B1_Mur2 SINE Alu 3 149 0 3 1604 1410 96 11 0 chr4 133620351 133620538 -22009582 + B2_Mm2 SINE B2 2 190 -5 3 1604 864 0 0 0 chr4 133622089 133622185 -22007935 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1604 399 278 101 43 chr4 133622767 133622955 -22007165 - MIRb SINE MIR -35 233 35 3 1604 463 251 113 34 chr4 133624067 133624244 -22005876 + L3 LINE CR1 4212 4402 -87 3 1604 479 258 70 13 chr4 133625155 133625312 -22004808 + ID_B1 SINE B4 2 167 -57 3 1604 407 229 185 8 chr4 133625315 133625434 -22004686 + RSINE1 SINE B4 21 160 -5 3 1604 263 299 0 0 chr4 133625441 133625508 -22004612 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1604 311 233 27 0 chr4 133625533 133625606 -22004514 + ID_B1 SINE B4 145 219 -5 3 1604 469 316 0 32 chr4 133625630 133625784 -22004336 + B1F1 SINE Alu 1 149 0 3 1604 872 152 0 52 chr4 133625791 133625944 -22004176 + B1_Mur2 SINE Alu 4 148 -1 3 1604 22 0 0 0 chr4 133625948 133625970 -22004150 + AT_rich Low_complexity Low_complexity 1 22 0 3 1604 529 321 32 84 chr4 133626223 133626397 -22003723 - B3A SINE B2 -12 204 33 3 1604 1496 40 0 17 chr4 133626397 133626575 -22003545 - B2_Mm1t SINE B2 -18 175 1 3 1604 529 320 31 84 chr4 133626575 133626614 -22003506 - B3A SINE B2 -163 35 2 3 1604 401 250 25 0 chr4 133626848 133626928 -22003192 + ID4_ SINE ID 2 83 0 3 1604 634 330 11 0 chr4 133626938 133627123 -22002997 + B3 SINE B2 1 187 -29 3 1604 225 0 0 0 chr4 133627123 133627148 -22002972 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1604 225 0 0 0 chr4 133627437 133627462 -22002658 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1604 190 205 26 0 chr4 133627515 133627554 -22002566 - MIRc SINE MIR -159 109 70 3 1604 752 61 0 0 chr4 133627629 133627727 -22002393 + B1_Mus1 SINE Alu 38 135 -13 3 1604 338 0 0 23 chr4 133627727 133627770 -22002350 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 3 1604 659 154 186 8 chr4 133627781 133627905 -22002215 + B1_Mus1 SINE Alu 3 148 0 3 1604 319 264 35 0 chr4 133628170 133628257 -22001863 - MIRc SINE MIR -98 170 81 3 1604 306 50 0 0 chr4 133630420 133630460 -21999660 + (GGA)n Simple_repeat Simple_repeat 1 40 0 3 1604 190 271 16 48 chr4 133631891 133631953 -21998167 + L3 LINE CR1 3375 3434 -1055 3 1604 664 268 0 58 chr4 133632088 133632262 -21997858 - RSINE1 SINE B4 0 165 2 3 1604 344 237 29 58 chr4 133632464 133632567 -21997553 - PB1D10 SINE Alu -6 111 12 3 1604 579 255 13 58 chr4 133632767 133632921 -21997199 - B1F SINE Alu 0 149 3 3 1604 543 266 8 8 chr4 133632936 133633065 -21997055 - ID_B1 SINE B4 -2 222 94 3 1604 327 324 78 47 chr4 133632938 133632983 -21997137 + YREP_Mm Unknown Unknown 181 269 -1543 3 1604 350 287 11 0 chr4 133632983 133633077 -21997043 - PB1D10 SINE Alu -22 95 1 4 1604 327 324 78 47 chr4 133633077 133633129 -21996991 + YREP_Mm Unknown Unknown 270 377 -1435 3 1604 241 290 75 0 chr4 133633318 133633411 -21996709 - L2b LINE L2 -5 3370 3271 4 1604 235 250 24 56 chr4 133633408 133633497 -21996623 + MIRc SINE MIR 72 154 -114 4 1604 585 274 26 7 chr4 133633682 133633836 -21996284 + ID_B1 SINE B4 1 157 -67 4 1604 543 296 67 0 chr4 133633836 133633971 -21996149 + RSINE1 SINE B4 3 146 -19 4 1604 189 0 0 0 chr4 133634082 133634103 -21996017 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1604 1183 68 0 7 chr4 133634353 133634500 -21995620 + B1_Mus1 SINE Alu 2 147 -1 4 1604 205 220 19 39 chr4 133634933 133634985 -21995135 - L2c LINE L2 -40 3347 3297 4 1604 546 198 0 36 chr4 133635009 133635119 -21995001 + PB1D9 SINE Alu 13 118 -2 4 1604 217 305 0 0 chr4 133635566 133635625 -21994495 + B4A SINE B4 87 145 -147 4 1604 269 293 0 39 chr4 133635582 133635660 -21994460 + B1F SINE Alu 18 92 -57 4 1604 198 0 0 0 chr4 133635669 133635691 -21994429 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 4 1604 1011 73 237 7 chr4 133635888 133636040 -21994080 - B2_Mm2 SINE B2 -7 188 2 4 1604 932 137 14 14 chr4 133638857 133638998 -21991122 + B1_Mur4 SINE Alu 1 141 -9 4 1604 246 105 0 0 chr4 133639292 133639330 -21990790 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1604 575 326 16 37 chr4 133639473 133639661 -21990459 - B3A SINE B2 0 198 15 4 1604 368 243 0 0 chr4 133639679 133639753 -21990367 - PB1D9 SINE Alu -6 114 41 4 1604 463 244 115 54 chr4 133639857 133640144 -21989976 - L1MC3 LINE L1 -840 6945 6656 4 1604 1450 154 176 7 chr4 133640163 133640412 -21989708 - RLTR15 LTR ERVK 0 359 67 4 1604 1546 53 27 0 chr4 133640412 133640600 -21989520 - B2_Mm1t SINE B2 0 193 1 4 1604 1450 154 176 7 chr4 133640600 133640657 -21989463 - RLTR15 LTR ERVK -293 66 2 4 1604 304 171 68 54 chr4 133640769 133640843 -21989277 + PB1D10 SINE Alu 43 117 0 4 1604 335 317 89 0 chr4 133640855 133640956 -21989164 + ID_B1 SINE B4 94 203 -21 4 1604 1082 194 14 45 chr4 133641006 133641227 -21988893 - B3 SINE B2 -1 215 2 4 1604 1159 69 7 0 chr4 133641466 133641611 -21988509 + B1_Mus2 SINE Alu 2 147 0 4 1604 21 0 0 0 chr4 133641624 133641645 -21988475 + AT_rich Low_complexity Low_complexity 1 21 0 4 1604 604 109 19 47 chr4 133641645 133641751 -21988369 + B1_Mur3 SINE Alu 47 149 0 4 1604 724 163 66 15 chr4 133641782 133641919 -21988201 + B1_Mur2 SINE Alu 4 147 -2 4 1604 1397 60 55 0 chr4 133642082 133642264 -21987856 - B2_Mm2 SINE B2 -2 193 2 4 1604 414 206 89 67 chr4 133642511 133642646 -21987474 - B1_Mus1 SINE Alu -9 139 2 4 1604 310 350 8 57 chr4 133642725 133642849 -21987271 - RSINE1 SINE B4 -47 118 1 4 1604 431 133 13 26 chr4 133642853 133642930 -21987190 - PB1D10 SINE Alu -6 111 36 4 1604 252 253 40 84 chr4 133643018 133643172 -21986948 - B1_Mus1 SINE Alu 0 149 8 4 1604 204 320 93 0 chr4 133644062 133644137 -21985983 - MIRb SINE MIR -159 109 28 4 1604 239 292 29 90 chr4 133644172 133644327 -21985793 + MIR SINE MIR 61 225 -51 4 1604 1230 55 0 0 chr4 133645647 133645793 -21984327 - B1_Mus2 SINE Alu 0 147 2 4 1604 432 0 0 0 chr4 133646145 133646193 -21983927 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1604 545 189 54 0 chr4 133646199 133646310 -21983810 - B1_Mm SINE Alu -28 119 3 4 1604 238 301 43 0 chr4 133646312 133646405 -21983715 + MIRb SINE MIR 130 226 -42 4 1604 339 154 0 0 chr4 133646556 133646621 -21983499 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1604 1222 54 7 0 chr4 133647345 133647492 -21982628 + B1_Mus1 SINE Alu 1 148 0 4 1604 810 255 11 5 chr4 133647513 133647702 -21982418 + B3 SINE B2 27 216 0 4 1604 533 241 112 8 chr4 133647743 133647877 -21982243 + B1_Mur1 SINE Alu 1 148 -1 4 1604 180 0 0 0 chr4 133651280 133651300 -21978820 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1604 321 263 61 0 chr4 133651333 133651432 -21978688 - PB1D10 SINE Alu -1 116 12 4 1604 870 221 84 0 chr4 133651470 133651660 -21978460 + B3 SINE B2 1 206 -10 4 1604 529 225 0 35 chr4 133651663 133651778 -21978342 + B1_Mur1 SINE Alu 28 138 -11 4 1604 1053 82 7 0 chr4 133651779 133651914 -21978206 + B1_Mus2 SINE Alu 2 137 -10 4 1604 531 0 0 0 chr4 133651914 133651973 -21978147 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1604 418 217 75 9 chr4 133652093 133652200 -21977920 + ID_B1 SINE B4 103 216 -8 4 1604 615 81 0 0 chr4 133652436 133652522 -21977598 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1604 692 199 82 13 chr4 133652530 133652688 -21977432 - B3 SINE B2 -46 170 2 4 1604 486 212 0 157 chr4 133653573 133653672 -21976448 - B3A SINE B2 -78 120 32 4 1604 1258 113 38 0 chr4 133653672 133653857 -21976263 - B2_Mm2 SINE B2 -2 193 2 4 1604 486 212 0 157 chr4 133653857 133653897 -21976223 - B3A SINE B2 -167 31 3 4 1604 469 268 43 7 chr4 133653943 133654082 -21976038 - RSINE1 SINE B4 -20 145 2 4 1604 792 226 92 14 chr4 133654861 133655068 -21975052 + ID_B1 SINE B4 2 224 0 4 1604 1249 69 11 0 chr4 133655171 133655345 -21974775 + RLTR13C2 LTR ERVK 1 176 -632 4 1604 1342 56 0 0 chr4 133655344 133655523 -21974597 + RLTR13C2 LTR ERVK 331 509 -299 4 1604 1447 69 26 0 chr4 133655523 133655712 -21974408 - B2_Mm2 SINE B2 0 195 2 4 1604 1152 98 0 0 chr4 133655835 133656008 -21974112 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 4 1604 762 149 249 0 chr4 133656811 133656992 -21973128 - URR1A DNA MER1_type 0 226 1 4 1604 218 203 0 45 chr4 133657000 133657028 -21973092 + polypyrimidine Low_complexity Low_complexity 38 65 0 4 1604 1231 54 0 0 chr4 133657028 133657175 -21972945 - B1_Mus2 SINE Alu 0 147 1 4 1604 218 203 0 45 chr4 133657175 133657193 -21972927 + polypyrimidine Low_complexity Low_complexity 21 37 0 4 1604 1176 68 0 7 chr4 133657193 133657341 -21972779 - B1_Mus2 SINE Alu 0 147 1 4 1604 218 203 0 45 chr4 133657341 133657360 -21972760 + polypyrimidine Low_complexity Low_complexity 3 20 0 4 1604 1118 85 0 0 chr4 133657365 133657506 -21972614 - B1_Mus2 SINE Alu -5 142 2 4 1604 897 134 49 0 chr4 133657510 133657652 -21972468 - B1_Mur4 SINE Alu 0 150 2 4 1604 229 229 177 35 chr4 133657685 133657798 -21972322 - MIRb SINE MIR -48 220 92 4 1604 338 248 79 47 chr4 133657923 133658050 -21972070 - RSINE1 SINE B4 -26 139 9 4 1604 368 285 84 8 chr4 133658936 133659067 -21971053 + B1F1 SINE Alu 9 149 0 4 1604 389 133 326 22 chr4 133659081 133659173 -21970947 + PB1D7 SINE Alu 1 120 0 4 1604 339 257 62 27 chr4 133659194 133659306 -21970814 + B1F1 SINE Alu 1 116 -33 4 1604 243 268 57 23 chr4 133659229 133659317 -21970803 + MT2B LTR ERVL 194 284 -317 4 1604 907 226 38 24 chr4 133659334 133659543 -21970577 - B3 SINE B2 -1 215 4 4 1604 1140 52 0 0 chr4 133659559 133659695 -21970425 + B1_Mus2 SINE Alu 1 136 -11 4 1604 1695 21 5 0 chr4 133659726 133659917 -21970203 + B2_Mm1a SINE B2 2 193 0 4 1604 1426 84 16 16 chr4 133659940 133660134 -21969986 + B2_Mm2 SINE B2 1 194 -1 4 1604 404 107 270 26 chr4 133660584 133660699 -21969421 - B2_Mm2 SINE B2 -6 189 47 4 1604 1397 89 6 0 chr4 133660746 133660926 -21969194 - B2_Mm2 SINE B2 -14 181 1 4 1604 375 364 12 43 chr4 133661035 133661196 -21968924 + RSINE1 SINE B4 8 163 -2 4 1604 410 301 19 88 chr4 133661246 133661406 -21968714 + B4 SINE B4 115 263 -29 4 1604 375 202 0 71 chr4 133661479 133661564 -21968556 + PB1D10 SINE Alu 39 117 0 4 1604 249 282 7 32 chr4 133661546 133661700 -21968420 + ORR1B1-int LTR MaLR 605 754 -755 4 1604 974 67 0 7 chr4 133661605 133661740 -21968380 + B1_Mus1 SINE Alu 14 147 -1 4 1604 495 239 18 9 chr4 133661899 133662009 -21968111 + PB1D9 SINE Alu 4 114 -6 4 1604 232 252 99 36 chr4 133662217 133662328 -21967792 + L1MC4a LINE L1 7762 7879 -3 4 1604 578 131 0 10 chr4 133662539 133662639 -21967481 + (TCC)n Simple_repeat Simple_repeat 2 100 0 4 1604 328 220 132 0 chr4 133662641 133662732 -21967388 - PB1D9 SINE Alu -17 103 1 4 1604 879 193 282 25 chr4 133663037 133663359 -21966761 - MTD LTR MaLR -14 405 1 4 1604 269 263 13 38 chr4 133666711 133666790 -21963330 - MLT1L LTR MaLR -115 495 419 4 1604 276 30 0 0 chr4 133667070 133667103 -21963017 + (TCCCC)n Simple_repeat Simple_repeat 5 37 0 4 1604 672 157 35 0 chr4 133667434 133667549 -21962571 - B1_Mur2 SINE Alu -30 119 1 4 1604 424 354 15 15 chr4 133667724 133667919 -21962201 + B4 SINE B4 6 200 -92 4 1604 221 261 0 0 chr4 133667910 133667956 -21962164 + ID4 SINE ID 23 68 -15 4 1604 884 106 7 28 chr4 133670310 133670455 -21959665 - B1_Mus1 SINE Alu 0 148 7 4 1604 450 197 0 0 chr4 133670869 133670986 -21959134 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1604 794 138 79 7 chr4 133671113 133671252 -21958868 + B1_Mur3 SINE Alu 1 149 0 4 1604 232 284 249 48 chr4 133671276 133671505 -21958615 + B4 SINE B4 2 276 -16 4 1604 754 95 86 0 chr4 133672310 133672426 -21957694 - B1_Mus2 SINE Alu -13 134 9 4 1604 388 202 45 63 chr4 133672332 133672443 -21957677 - MT2B LTR ERVL -337 264 156 4 1604 538 194 19 0 chr4 133672466 133672569 -21957551 + PB1D10 SINE Alu 1 105 -12 4 1604 721 84 0 9 chr4 133672733 133672841 -21957279 - B1_Mur4 SINE Alu -2 148 42 5 1604 225 276 43 65 chr4 133672966 133673059 -21957061 + MIRm SINE MIR 62 152 -124 5 1604 258 300 0 0 chr4 133673291 133673361 -21956759 + ID4_ SINE ID 5 74 -9 5 1604 658 307 10 10 chr4 133673307 133673508 -21956612 + ID_B1 SINE B4 22 222 -2 5 1604 453 256 30 23 chr4 133673517 133673649 -21956471 + B3A SINE B2 2 134 -64 5 1604 712 126 27 100 chr4 133673722 133673872 -21956248 - B1_Mur2 SINE Alu -10 139 1 5 1604 244 330 18 9 chr4 133676201 133676311 -21953809 - MIR SINE MIR -85 177 67 5 1604 277 158 349 12 chr4 133676364 133676447 -21953673 + ID_B1 SINE B4 112 222 -2 5 1604 802 81 186 0 chr4 133676702 133676826 -21953294 - B1_Mus2 SINE Alu 0 147 1 5 1604 342 109 0 18 chr4 133677864 133677920 -21952200 - B2_Mm2 SINE B2 -94 101 47 5 1604 1091 88 0 117 chr4 133677984 133678190 -21951930 - B2_Mm2 SINE B2 -12 183 2 5 1604 227 294 17 84 chr4 133678767 133678886 -21951234 + MIRb SINE MIR 116 226 -42 5 1604 326 179 75 0 chr4 133678896 133678963 -21951157 + ID_B1 SINE B4 84 155 -69 5 1604 231 260 105 88 chr4 133678963 133678982 -21951138 + PB1D10 SINE Alu 3 86 -31 5 1604 1130 54 0 13 chr4 133678982 133679131 -21950989 + B1_Mus2 SINE Alu 1 147 0 5 1604 231 260 105 88 chr4 133679131 133679157 -21950963 + PB1D10 SINE Alu 87 117 0 5 1604 200 94 31 0 chr4 133679692 133679724 -21950396 + (GCATG)n Simple_repeat Simple_repeat 4 36 0 5 1604 186 43 0 0 chr4 133683120 133683143 -21946977 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 5 1604 183 156 0 0 chr4 133683211 133683243 -21946877 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1604 1542 36 5 0 chr4 133687912 133688104 -21942016 + B2_Mm1a SINE B2 1 193 0 5 1604 783 222 100 10 chr4 133688956 133689156 -21940964 - ID_B1 SINE B4 -5 219 2 5 1604 303 185 154 0 chr4 133689160 133689225 -21940895 - B1_Mur1 SINE Alu -1 148 74 5 1604 974 106 14 0 chr4 133689233 133689374 -21940746 - B1_Mus1 SINE Alu -5 143 1 5 1604 959 186 49 0 chr4 133690246 133690450 -21939670 - URR1B DNA MER1_type -6 219 6 5 1604 619 283 60 20 chr4 133690710 133690959 -21939161 - B4A SINE B4 -16 276 18 5 1604 455 190 13 0 chr4 133691370 133691448 -21938672 + B3A SINE B2 1 79 -119 5 1604 1443 210 51 8 chr4 133691448 133691783 -21938337 + RMER12 LTR ERVK 1 339 -1509 5 1604 2829 186 146 27 chr4 133691787 133692545 -21937575 + RMER12 LTR ERVK 447 1249 -73 5 1604 651 211 26 103 chr4 133692640 133692835 -21937285 + B3 SINE B2 37 216 0 5 1605 2927 59 26 0 chr4 133693711 133694101 -21936019 + MTB LTR MaLR 1 400 0 5 1605 874 132 71 39 chr4 133694895 133695077 -21935043 - B2_Mm2 SINE B2 -7 188 1 5 1605 206 62 0 30 chr4 133695182 133695215 -21934905 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 1605 1058 68 0 45 chr4 133695215 133695369 -21934751 - B1_Mm SINE Alu 0 147 1 5 1605 969 136 7 0 chr4 133695476 133695623 -21934497 + B1_Mus1 SINE Alu 1 148 0 5 1605 32 43 0 0 chr4 133695625 133695671 -21934449 + AT_rich Low_complexity Low_complexity 1 46 0 5 1605 1346 84 16 21 chr4 133695812 133696006 -21934114 - B2_Mm2 SINE B2 -2 193 1 5 1605 244 256 11 44 chr4 133696159 133696216 -21933904 + MTC LTR MaLR 153 206 -213 5 1605 433 265 79 22 chr4 133696216 133696355 -21933765 + B3A SINE B2 2 148 -50 5 1605 3415 71 17 8 chr4 133696355 133696826 -21933294 + MT2C_Mm LTR ERVL 1 475 0 5 1605 17924 131 53 13 chr4 133696830 133698979 -21931141 + MERVL_2A-int LTR ERVL 5 2381 -3380 5 1605 1105 58 0 0 chr4 133698979 133699117 -21931003 + B1_Mus1 SINE Alu 1 138 -10 5 1605 324 0 0 0 chr4 133699118 133699154 -21930966 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1605 17924 112 50 10 chr4 133699154 133700040 -21930080 + MERVL_2A-int LTR ERVL 2274 3262 -2499 5 1605 10532 93 20 6 chr4 133700039 133701516 -21928604 + MERVL_2A-int LTR ERVL 3884 5380 -105 5 1605 306 83 100 0 chr4 133701547 133701607 -21928513 + MERVL_2A-int LTR ERVL 5564 5629 -132 5 1605 340 178 13 40 chr4 133701607 133701683 -21928437 + ORR1A3-int LTR MaLR 567 640 -1323 5 1605 290 26 0 0 chr4 133701683 133701721 -21928399 + MERVL-int LTR ERVL 5448 5485 0 5 1605 3386 79 17 4 chr4 133701721 133702190 -21927930 + MT2C_Mm LTR ERVL 1 475 0 5 1605 259 301 21 31 chr4 133702325 133702421 -21927699 + MTC LTR MaLR 309 403 -18 5 1605 388 258 113 0 chr4 133702688 133702785 -21927335 + PB1D9 SINE Alu 3 110 -10 5 1605 1230 80 17 0 chr4 133702816 133702991 -21927129 + B2_Mm1t SINE B2 3 180 -13 5 1605 432 99 316 26 chr4 133703037 133703151 -21926969 + B2_Mm2 SINE B2 47 193 -2 5 1605 1038 95 7 0 chr4 133703147 133703294 -21926826 + B2_Mm2 SINE B2 27 174 -21 5 1605 531 205 16 49 chr4 133703445 133703568 -21926552 - PB1D9 SINE Alu -1 119 1 5 1605 684 154 17 0 chr4 133703672 133703789 -21926331 - PB1D9 SINE Alu 0 120 2 5 1605 572 179 102 22 chr4 133704146 133704283 -21925837 + B1_Mur1 SINE Alu 1 148 -1 5 1605 579 179 9 0 chr4 133704292 133704398 -21925722 + B1_Mur2 SINE Alu 17 123 -26 5 1605 262 279 30 109 chr4 133704398 133704449 -21925671 + MT2B LTR ERVL 190 323 -278 5 1605 216 0 0 0 chr4 133705026 133705050 -21925070 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1605 711 259 35 0 chr4 133705067 133705241 -21924879 + B3 SINE B2 37 216 0 5 1605 32 26 0 0 chr4 133705652 133705691 -21924429 + AT_rich Low_complexity Low_complexity 1 39 0 5 1605 322 226 36 0 chr4 133705711 133705795 -21924325 + PB1D9 SINE Alu 34 120 0 5 1605 1167 115 16 16 chr4 133705816 133706010 -21924110 + B2_Mm2 SINE B2 1 194 -1 5 1605 423 281 0 10 chr4 133706060 133706157 -21923963 + B3A SINE B2 36 131 -67 5 1605 1242 87 49 5 chr4 133706377 133706562 -21923558 + B2_Mm2 SINE B2 2 194 -1 5 1605 1343 39 38 22 chr4 133706601 133706786 -21923334 - B2_Mm2 SINE B2 -7 188 1 5 1605 413 211 144 0 chr4 133706791 133706895 -21923225 - PB1D9 SINE Alu 0 120 2 5 1605 329 250 34 11 chr4 133706923 133707012 -21923108 - RSINE1 SINE B4 0 165 75 5 1605 620 277 6 6 chr4 133707041 133707201 -21922919 + MTE2b LTR MaLR 25 184 -195 5 1605 517 183 31 62 chr4 133707235 133707363 -21922757 + RSINE1 SINE B4 8 131 -34 5 1605 380 183 24 17 chr4 133707408 133707500 -21922620 + B1_Mur4 SINE Alu 31 149 -1 5 1605 425 300 0 0 chr4 133708286 133708386 -21921734 + MER5A DNA MER1_type 90 189 0 5 1605 1221 168 5 5 chr4 133708403 133708619 -21921501 + B3 SINE B2 1 216 0 5 1605 845 158 20 0 chr4 133708995 133709141 -21920979 + B1_Mur4 SINE Alu 2 150 0 5 1605 594 246 8 23 chr4 133709177 133709306 -21920814 + B3 SINE B2 23 149 -67 5 1605 389 207 12 0 chr4 133709354 133709436 -21920684 + B3 SINE B2 123 205 -11 5 1605 1308 80 26 5 chr4 133710634 133710823 -21919297 + B2_Mm2 SINE B2 2 194 -1 5 1605 905 214 10 10 chr4 133711026 133711220 -21918900 + B3A SINE B2 3 196 -2 5 1605 306 0 0 0 chr4 133711258 133711292 -21918828 + (CAACC)n Simple_repeat Simple_repeat 5 38 0 5 1605 1169 61 0 0 chr4 133711325 133711472 -21918648 + B1_Mus1 SINE Alu 1 147 -1 5 1605 249 163 0 0 chr4 133711473 133711522 -21918598 + A-rich Low_complexity Low_complexity 1 49 0 5 1605 533 254 15 15 chr4 133712422 133712554 -21917566 + B1F SINE Alu 13 144 -5 5 1605 405 200 0 24 chr4 133713032 133713114 -21917006 + B1F SINE Alu 70 149 0 5 1605 180 0 0 0 chr4 133713236 133713256 -21916864 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1605 323 275 71 14 chr4 133713290 133713430 -21916690 + B1F SINE Alu 1 148 -1 5 1605 1004 65 65 0 chr4 133714116 133714255 -21915865 + B1_Mus1 SINE Alu 1 148 0 5 1605 589 214 27 33 chr4 133714273 133714443 -21915677 + B3 SINE B2 28 192 -3 5 1605 227 281 50 50 chr4 133714463 133714512 -21915608 + PB1D10 SINE Alu 10 110 -7 5 1605 256 163 0 58 chr4 133714512 133714564 -21915556 + ID_B1 SINE B4 169 217 -7 5 1605 247 292 40 27 chr4 133714593 133714667 -21915453 + ID4 SINE ID 3 77 -6 5 1605 416 339 47 47 chr4 133714701 133714872 -21915248 + B4A SINE B4 3 173 -119 5 1605 470 270 99 52 chr4 133714872 133715083 -21915037 + ID_B1 SINE B4 4 224 0 5 1605 221 329 12 12 chr4 133715083 133715166 -21914954 + GA-rich Low_complexity Low_complexity 5 87 0 5 1605 276 100 0 0 chr4 133715190 133715230 -21914890 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1605 1802 78 22 11 chr4 133715305 133715576 -21914544 + RLTR4_Mm LTR ERV1 1 274 -468 5 1605 2083 58 0 23 chr4 133715553 133715852 -21914268 + RLTR4_Mm LTR ERV1 451 742 0 5 1605 17966 18 1 8 chr4 133715852 133717976 -21912144 + RLTR4_MM-int LTR ERV1 1 2110 -5491 5 1605 14385 68 1 1 chr4 133717965 133719803 -21910317 + MuLV-int LTR ERV1 3936 5773 -1833 5 1605 2335 19 0 0 chr4 133719801 133720070 -21910050 + RLTR4_MM-int LTR ERV1 7333 7601 0 5 1605 1802 78 22 11 chr4 133720070 133720341 -21909779 + RLTR4_Mm LTR ERV1 1 274 -468 5 1605 2083 58 0 23 chr4 133720318 133720617 -21909503 + RLTR4_Mm LTR ERV1 451 742 0 5 1605 228 299 0 83 chr4 133720833 133720917 -21909203 - RSINE1 SINE B4 0 165 89 5 1605 2153 132 27 20 chr4 133720920 133721322 -21908798 + RMER6A LTR ERVK 351 755 -1 5 1605 262 305 117 0 chr4 133721365 133721493 -21908627 + B1_Mus1 SINE Alu 6 148 0 5 1605 581 225 306 0 chr4 133721518 133721678 -21908442 - B3A SINE B2 -7 209 1 5 1605 773 168 73 0 chr4 133721696 133721833 -21908287 - B1_Mur2 SINE Alu -1 148 2 5 1605 230 307 27 0 chr4 133722145 133722220 -21907900 + ID4_ SINE ID 4 80 -3 5 1605 1457 74 16 5 chr4 133722294 133722485 -21907635 + B2_Mm1t SINE B2 1 193 0 5 1605 1284 65 18 0 chr4 133722500 133722668 -21907452 + B2_Mm1t SINE B2 1 171 -22 5 1605 343 114 310 26 chr4 133722708 133722824 -21907296 + B2_Mm2 SINE B2 47 195 0 5 1605 228 86 0 0 chr4 133722837 133722872 -21907248 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 5 1605 949 94 11 1 chr4 133722884 133723031 -21907089 + B2_Mm2 SINE B2 2 160 -56 5 1605 180 0 0 0 chr4 133723043 133723063 -21907057 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1605 1316 71 6 0 chr4 133723904 133724074 -21906046 - B2_Mm1a SINE B2 -22 171 1 5 1605 682 200 0 58 chr4 133724120 133724258 -21905862 - B1_Mur1 SINE Alu -1 148 19 6 1605 409 283 11 11 chr4 133724272 133724365 -21905755 - PB1D7 SINE Alu -23 97 5 6 1605 1242 34 0 7 chr4 133724408 133724555 -21905565 - B1_Mus1 SINE Alu 0 148 3 6 1605 420 266 153 0 chr4 133724629 133724753 -21905367 + B1F2 SINE Alu 1 143 -6 6 1605 269 363 41 43 chr4 133724955 133725172 -21904948 - MER20B DNA MER1_type 0 219 1 6 1605 354 301 87 14 chr4 133725211 133725349 -21904771 + MT2B LTR ERVL 131 278 -323 6 1605 416 229 162 0 chr4 133725249 133725354 -21904766 + B1_Mur1 SINE Alu 6 127 -22 6 1605 1324 126 5 46 chr4 133725377 133725593 -21904527 + B3 SINE B2 1 207 -9 6 1605 1428 64 5 31 chr4 133725612 133725806 -21904314 + B2_Mm1t SINE B2 2 190 -3 6 1605 777 249 42 124 chr4 133725933 133726126 -21903994 + B3A SINE B2 9 185 -10 6 1605 229 314 69 11 chr4 133726129 133726216 -21903904 + PB1D7 SINE Alu 28 119 -1 6 1605 297 240 157 74 chr4 133726263 133726371 -21903749 - PB1D10 SINE Alu 0 117 1 6 1605 30 45 0 0 chr4 133726464 133726508 -21903612 + AT_rich Low_complexity Low_complexity 1 44 0 6 1605 225 0 0 0 chr4 133726546 133726571 -21903549 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1605 1353 81 27 0 chr4 133726995 133727180 -21902940 - B2_Mm1t SINE B2 -2 191 2 6 1605 785 175 22 0 chr4 133727190 133727327 -21902793 - B1_Mus2 SINE Alu -7 140 1 6 1605 600 228 9 0 chr4 133727367 133727481 -21902639 + ID_B1 SINE B4 84 198 -26 6 1605 244 331 29 66 chr4 133727481 133727493 -21902627 + MT2B2 LTR ERVL 210 288 -296 6 1605 277 346 0 0 chr4 133727518 133727599 -21902521 + B1F1 SINE Alu 36 116 -33 6 1605 23 0 0 0 chr4 133727754 133727777 -21902343 + AT_rich Low_complexity Low_complexity 1 23 0 6 1605 410 295 86 7 chr4 133727880 133728020 -21902100 + RSINE1 SINE B4 4 154 -11 6 1605 487 43 0 28 chr4 133728031 133728103 -21902017 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1605 612 27 0 0 chr4 133728614 133728688 -21901432 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1605 264 100 0 0 chr4 133728968 133729008 -21901112 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1605 446 273 141 13 chr4 133729012 133729168 -21900952 - MER21B LTR ERV1 -210 653 478 6 1605 611 257 51 14 chr4 133729173 133729311 -21900809 + B1F2 SINE Alu 6 148 -1 6 1605 1145 58 0 0 chr4 133729338 133729477 -21900643 + B1_Mus1 SINE Alu 1 139 -9 6 1605 326 274 132 0 chr4 133729505 133729611 -21900509 + PB1D7 SINE Alu 1 120 0 6 1605 271 356 44 15 chr4 133730104 133730241 -21899879 - MER21B LTR ERV1 -722 141 1 6 1605 425 292 50 153 chr4 133730285 133730350 -21899770 + B3 SINE B2 3 62 -154 6 1605 1445 55 38 11 chr4 133730350 133730533 -21899587 + B2_Mm2 SINE B2 3 190 -5 6 1605 425 292 50 153 chr4 133730533 133730689 -21899431 + B3 SINE B2 63 201 -15 6 1605 537 237 26 0 chr4 133730692 133730806 -21899314 + B1_Mur3 SINE Alu 23 139 -10 6 1605 204 67 0 0 chr4 133730806 133730836 -21899284 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1605 249 286 28 14 chr4 133730859 133730930 -21899190 + B4A SINE B4 80 151 -141 6 1605 349 281 15 83 chr4 133730867 133730999 -21899121 + PB1 SINE Alu 5 127 0 6 1605 758 215 0 82 chr4 133731020 133731228 -21898892 + B3A SINE B2 5 195 -3 6 1605 666 208 24 0 chr4 133731246 133731371 -21898749 + B1_Mur4 SINE Alu 2 129 -21 6 1605 483 281 93 0 chr4 133731400 133731539 -21898581 - RSINE1 SINE B4 -6 159 8 6 1605 788 39 19 0 chr4 133731752 133731855 -21898265 + (TTTTC)n Simple_repeat Simple_repeat 1 105 0 6 1605 1086 76 0 20 chr4 133731855 133731992 -21898128 - B1_Mus1 SINE Alu -11 137 1 6 1605 475 320 0 0 chr4 133732068 133732193 -21897927 - ID_B1 SINE B4 -11 213 89 6 1605 1325 135 0 24 chr4 133732284 133732489 -21897631 + ORR1A3 LTR MaLR 1 200 -126 6 1605 703 138 103 0 chr4 133732524 133732640 -21897480 + B1_Mur4 SINE Alu 22 149 -1 6 1605 826 186 54 104 chr4 133733624 133733846 -21896274 + B3 SINE B2 2 212 -4 6 1605 305 259 35 23 chr4 133734043 133734130 -21895990 - PB1D10 SINE Alu 0 117 30 6 1605 348 340 55 34 chr4 133734283 133734429 -21895691 - MER2 DNA MER2_type 0 345 197 6 1605 297 177 81 30 chr4 133734533 133734632 -21895488 + L1MB7 LINE L1 5725 5828 -356 6 1605 553 281 90 0 chr4 133734642 133734809 -21895311 + B4A SINE B4 16 197 -95 6 1605 1531 247 73 21 chr4 133734811 133735233 -21894887 + Lx6 LINE L1 6963 7406 -54 6 1605 340 260 0 0 chr4 133735262 133735335 -21894785 + B4A SINE B4 220 292 0 6 1605 1041 268 13 42 chr4 133735375 133735664 -21894456 + B4 SINE B4 8 291 -1 6 1605 439 291 152 0 chr4 133735664 133735822 -21894298 + L1MB7 LINE L1 5887 6068 -116 6 1605 232 339 0 0 chr4 133735960 133736016 -21894104 - B1F2 SINE Alu -56 93 38 6 1605 1052 140 79 138 chr4 133736030 133736119 -21894001 - URR1A DNA MER1_type 0 226 157 6 1605 826 102 17 0 chr4 133736119 133736237 -21893883 - PB1D9 SINE Alu 0 120 1 6 1605 1052 140 79 138 chr4 133736237 133736387 -21893733 - URR1A DNA MER1_type -70 156 1 6 1605 342 208 108 90 chr4 133736459 133736570 -21893550 - PB1D9 SINE Alu -2 118 6 6 1605 210 37 0 0 chr4 133736586 133736613 -21893507 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1605 305 237 0 62 chr4 133736722 133736803 -21893317 + RMER1B Other Other 361 436 -630 6 1605 4406 207 96 74 chr4 133736869 133737632 -21892488 + RMER1A Other Other 3 473 -557 6 1605 342 0 0 0 chr4 133737632 133737670 -21892450 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1605 414 0 0 0 chr4 133737670 133737716 -21892404 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1605 4406 161 85 113 chr4 133737716 133738245 -21891875 + RMER1A Other Other 381 882 -148 6 1605 369 0 0 0 chr4 133738245 133738286 -21891834 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1605 4406 161 85 113 chr4 133738286 133738400 -21891720 + RMER1A Other Other 883 1028 -2 6 1605 273 224 204 0 chr4 133738528 133738626 -21891494 + PB1D7 SINE Alu 2 119 -1 6 1605 453 283 84 21 chr4 133738629 133738792 -21891328 + B3A SINE B2 2 197 -1 6 1605 332 350 81 32 chr4 133738811 133738997 -21891123 + B4 SINE B4 82 276 -16 6 1605 34 0 0 0 chr4 133739049 133739083 -21891037 + AT_rich Low_complexity Low_complexity 1 34 0 6 1605 906 182 7 0 chr4 133739096 133739244 -21890876 + B1_Mur4 SINE Alu 2 150 0 6 1605 280 331 58 43 chr4 133739446 133739585 -21890535 - MIR SINE MIR -10 252 112 6 1605 499 332 74 27 chr4 133739589 133739846 -21890274 + B4A SINE B4 1 269 -23 6 1605 317 251 61 50 chr4 133739828 133739927 -21890193 - RSINE1 SINE B4 -191 101 3 6 1605 307 130 0 0 chr4 133739953 133739999 -21890121 - B1_Mus2 SINE Alu -21 126 81 6 1605 584 119 8 0 chr4 133740000 133740118 -21890002 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 1605 821 201 24 12 chr4 133740153 133740319 -21889801 + RCHARR1 DNA MER1_type 586 753 -221 6 1605 462 250 167 0 chr4 133740298 133740418 -21889702 - ID_B1 SINE B4 -1 223 84 6 1605 396 170 131 9 chr4 133740411 133740518 -21889602 + RCHARR1 DNA MER1_type 719 838 -136 6 1605 324 214 82 12 chr4 133740516 133740601 -21889519 - B1F SINE Alu 0 149 59 6 1605 837 297 54 76 chr4 133740635 133741031 -21889089 + RLTR12B LTR ERVK 64 454 -74 6 1605 261 0 0 0 chr4 133741031 133741060 -21889060 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1605 345 100 0 0 chr4 133741060 133741109 -21889011 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1605 837 297 54 76 chr4 133741109 133741159 -21888961 + RLTR12B LTR ERVK 455 500 -28 6 1605 422 143 57 0 chr4 133741179 133741249 -21888871 - tRNA-Lys-AAG tRNA tRNA 0 76 3 6 1605 351 229 0 0 chr4 133741259 133741320 -21888800 - B1F SINE Alu -88 61 1 6 1605 344 216 220 17 chr4 133741321 133741438 -21888682 + RCHARR1 DNA MER1_type 825 965 -9 6 1605 592 206 23 31 chr4 133741438 133741568 -21888552 + B3 SINE B2 2 130 -86 6 1605 198 281 53 0 chr4 133741593 133741650 -21888470 + L3 LINE CR1 2498 2557 -1932 6 1605 210 256 26 0 chr4 133741646 133741711 -21888409 - L2b LINE L2 -4 3422 3321 6 1605 273 269 111 87 chr4 133741744 133741803 -21888317 + B1F SINE Alu 21 85 -64 6 1605 699 201 13 53 chr4 133741803 133741955 -21888165 + B1_Mur1 SINE Alu 2 147 -2 6 1605 273 269 111 87 chr4 133741955 133742021 -21888099 + B1F SINE Alu 86 148 -1 6 1605 767 94 0 19 chr4 133743441 133743549 -21886571 + B1_Mus1 SINE Alu 1 106 -42 6 1605 346 232 126 0 chr4 133743750 133743845 -21886275 + PB1D10 SINE Alu 6 112 -5 6 1605 468 315 28 7 chr4 133743984 133744128 -21885992 - ID_B1 SINE B4 0 224 78 6 1605 1154 120 16 26 chr4 133744235 133744424 -21885696 - B2_Mm2 SINE B2 -8 187 1 6 1605 433 316 0 25 chr4 133744459 133744579 -21885541 - ID_B1 SINE B4 -1 223 107 6 1605 1602 32 21 5 chr4 133744587 133744778 -21885342 - B2_Mm2 SINE B2 0 195 2 6 1605 747 0 0 0 chr4 133744782 133744865 -21885255 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 6 1605 755 169 0 0 chr4 133744868 133744986 -21885134 - B1_Mur4 SINE Alu -30 120 3 6 1605 1368 99 10 0 chr4 133745018 133745210 -21884910 + B2_Mm2 SINE B2 1 194 -1 6 1605 509 250 62 0 chr4 133745409 133745521 -21884599 - PB1D7 SINE Alu -1 119 1 6 1605 1340 25 0 18 chr4 133745834 133746120 -21884000 + (GAAA)n Simple_repeat Simple_repeat 1 280 0 6 1605 360 64 0 0 chr4 133746120 133746167 -21883953 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 6 1605 1544 58 0 16 chr4 133746168 133746362 -21883758 + B2_Mm2 SINE B2 5 195 0 6 1605 321 26 0 0 chr4 133746367 133746405 -21883715 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1605 304 277 24 12 chr4 133746447 133746531 -21883589 - MIR3 SINE MIR -41 167 83 6 1605 564 152 0 0 chr4 133746531 133746630 -21883490 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1605 801 219 20 51 chr4 133747097 133747294 -21882826 + B3A SINE B2 2 192 -6 6 1605 570 29 0 0 chr4 133747353 133747421 -21882699 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 1605 608 256 36 0 chr4 133747421 133747558 -21882562 - RSINE1 SINE B4 -13 152 11 6 1605 586 262 59 20 chr4 133747611 133747763 -21882357 - ID_B1 SINE B4 0 224 67 7 1605 186 43 0 0 chr4 133748209 133748232 -21881888 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 1605 899 199 0 7 chr4 133748441 133748593 -21881527 + B3 SINE B2 1 151 -65 7 1605 185 234 21 21 chr4 133749244 133749292 -21880828 - MIRb SINE MIR -58 210 163 7 1605 819 242 24 5 chr4 133749322 133749534 -21880586 - B3 SINE B2 0 216 1 7 1605 227 249 80 122 chr4 133749714 133749902 -21880218 + MIRb SINE MIR 83 262 -6 7 1605 532 266 105 0 chr4 133749916 133750040 -21880080 - ID_B1 SINE B4 -8 216 80 7 1605 1182 82 0 0 chr4 133750085 133750232 -21879888 - B1_Mus1 SINE Alu 0 148 2 7 1605 186 43 0 0 chr4 133750248 133750271 -21879849 + (TAA)n Simple_repeat Simple_repeat 2 24 0 7 1605 264 59 0 0 chr4 133750271 133750305 -21879815 + (TTA)n Simple_repeat Simple_repeat 2 35 0 7 1605 912 109 40 125 chr4 133750305 133750505 -21879615 - B2_Mm2 SINE B2 -12 183 1 7 1605 356 312 9 27 chr4 133750517 133750629 -21879491 - PB1D10 SINE Alu -6 111 2 7 1605 309 355 40 0 chr4 133750697 133750821 -21879299 + MIR SINE MIR 113 241 -21 7 1605 385 224 26 0 chr4 133750956 133751032 -21879088 + MIRc SINE MIR 72 149 -119 7 1605 368 247 0 88 chr4 133751083 133751185 -21878935 + RMER6C LTR ERVK 597 689 -1 7 1605 493 264 31 131 chr4 133751642 133751864 -21878256 + B4 SINE B4 24 223 -69 7 1605 870 135 7 28 chr4 133751720 133751865 -21878255 + B1_Mur4 SINE Alu 8 149 -1 7 1605 642 254 46 159 chr4 133751891 133751905 -21878215 + B4 SINE B4 80 106 -186 7 1605 850 190 0 0 chr4 133751905 133752042 -21878078 + B1_Mur2 SINE Alu 12 148 -1 7 1605 642 254 46 159 chr4 133752042 133752130 -21877990 + B4 SINE B4 107 291 -1 7 1605 318 132 57 0 chr4 133752197 133752250 -21877870 + RSINE1 SINE B4 5 60 -105 7 1605 624 120 0 0 chr4 133752276 133752376 -21877744 + (CA)n Simple_repeat Simple_repeat 1 100 0 7 1605 349 266 199 20 chr4 133753006 133753152 -21876968 - MIRb SINE MIR -85 183 12 7 1605 220 258 90 15 chr4 133753274 133753341 -21876779 - B4 SINE B4 -162 130 59 7 1605 631 224 70 37 chr4 133753396 133753562 -21876558 - ID_B1 SINE B4 -56 236 69 7 1605 579 254 102 32 chr4 133753598 133753791 -21876329 - B3A SINE B2 -1 215 2 7 1605 363 278 33 0 chr4 133753792 133753882 -21876238 - PB1D7 SINE Alu -12 108 16 7 1605 1237 41 0 0 chr4 133753946 133754091 -21876029 + B1_Mus2 SINE Alu 3 147 0 7 1605 455 221 240 0 chr4 133754127 133754231 -21875889 + B1_Mur2 SINE Alu 1 129 -20 7 1605 1257 83 12 0 chr4 133754245 133754413 -21875707 + B2_Mm1t SINE B2 2 171 -22 7 1605 330 154 321 27 chr4 133754450 133754562 -21875558 + B2_Mm2 SINE B2 47 191 -4 7 1605 611 255 14 7 chr4 133754601 133754747 -21875373 + B1_Mur1 SINE Alu 1 147 -2 7 1605 252 0 0 0 chr4 133754870 133754898 -21875222 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1605 186 118 0 0 chr4 133754899 133754933 -21875187 + (CAA)n Simple_repeat Simple_repeat 1 34 0 7 1605 320 250 12 62 chr4 133755054 133755135 -21874985 + B1F SINE Alu 7 83 -44 7 1605 541 233 91 59 chr4 133756317 133756472 -21873648 + RSINE1 SINE B4 1 155 -10 7 1605 504 0 0 0 chr4 133756474 133756530 -21873590 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1605 259 388 34 8 chr4 133756567 133756684 -21873436 + B4 SINE B4 79 198 -94 7 1605 783 206 8 0 chr4 133756583 133756714 -21873406 + B1_Mur3 SINE Alu 9 140 -9 7 1605 24 0 0 0 chr4 133756722 133756746 -21873374 + AT_rich Low_complexity Low_complexity 1 24 0 7 1605 447 261 226 6 chr4 133756862 133757043 -21873077 + ID_B1 SINE B4 1 221 -3 7 1605 462 36 0 0 chr4 133757285 133757341 -21872779 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1605 599 142 9 0 chr4 133757670 133757776 -21872344 + GA-rich Low_complexity Low_complexity 3 109 0 7 1605 644 275 25 58 chr4 133759853 133760127 -21869993 + Lx9 LINE L1 6922 7186 -458 7 1605 1472 72 0 5 chr4 133760141 133760337 -21869783 + B2_Mm2 SINE B2 1 195 0 7 1605 1164 104 10 47 chr4 133760383 133760575 -21869545 - B2_Mm2 SINE B2 -7 188 4 7 1605 303 289 118 52 chr4 133760807 133760849 -21869271 - ID_B1 SINE B4 0 224 86 7 1605 342 314 23 23 chr4 133760849 133760937 -21869183 - PB1D7 SINE Alu -28 92 5 7 1605 430 291 15 38 chr4 133760952 133761084 -21869036 - ID_B1 SINE B4 -18 206 78 7 1605 303 191 0 0 chr4 133761115 133761183 -21868937 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1605 663 251 0 63 chr4 133761184 133761358 -21868762 - RSINE1 SINE B4 -1 164 2 7 1605 737 106 19 148 chr4 133761386 133761541 -21868579 - B1_Mur1 SINE Alu -6 143 9 7 1605 611 189 54 0 chr4 133761559 133761670 -21868450 - B3A SINE B2 -80 118 2 7 1605 939 191 71 20 chr4 133761694 133761892 -21868228 - B3 SINE B2 -7 209 2 7 1605 531 268 55 0 chr4 133761935 133762062 -21868058 - B3 SINE B2 -6 210 77 7 1605 354 125 88 100 chr4 133762143 133762223 -21867897 + PB1D9 SINE Alu 41 119 -1 7 1605 400 335 63 0 chr4 133762449 133762607 -21867513 - MIRb SINE MIR -83 185 18 7 1605 190 311 36 24 chr4 133763009 133763120 -21867000 + MIRm SINE MIR 70 175 -33 7 1605 441 0 0 0 chr4 133763229 133763278 -21866842 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1605 1211 41 0 0 chr4 133763278 133763414 -21866706 - B1_Mus2 SINE Alu -9 138 3 7 1605 419 235 98 0 chr4 133763430 133763532 -21866588 - PB1D10 SINE Alu 0 117 6 7 1605 321 306 82 0 chr4 133763457 133763542 -21866578 - ID_B1 SINE B4 -56 168 77 7 1605 391 293 10 0 chr4 133763810 133763909 -21866211 + B3A SINE B2 32 131 -67 7 1605 387 0 0 0 chr4 133764084 133764127 -21865993 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1605 222 324 111 28 chr4 133764171 133764279 -21865841 - PB1D10 SINE Alu 0 117 1 7 1605 254 296 0 43 chr4 133764188 133764280 -21865840 - ID_B1 SINE B4 -55 169 82 7 1605 205 304 74 94 chr4 133764397 133764600 -21865520 + MIRb SINE MIR 35 233 -35 7 1605 1079 146 0 6 chr4 133765690 133765849 -21864271 + RMER13A LTR ERVK 1 158 -702 7 1605 1192 81 0 0 chr4 133765849 133765997 -21864123 + B1_Mus1 SINE Alu 1 148 0 7 1605 339 245 200 6 chr4 133765997 133766157 -21863963 + L1MD LINE L1 3081 3271 -2875 7 1605 2147 156 94 42 chr4 133766158 133766646 -21863474 + RMER13A LTR ERVK 146 840 -20 7 1605 1229 139 71 9 chr4 133766679 133766890 -21863230 + ORR1D1 LTR MaLR 1 224 -150 7 1605 299 323 42 21 chr4 133767300 133767395 -21862725 - B1F1 SINE Alu -51 98 2 7 1605 735 59 1 0 chr4 133767402 133767508 -21862612 - B1_Mus2 SINE Alu -10 138 32 7 1605 311 298 47 23 chr4 133767495 133767581 -21862539 - B1F1 SINE Alu -60 89 2 7 1605 770 66 9 0 chr4 133767588 133767694 -21862426 - B1_Mus1 SINE Alu -10 138 32 7 1605 586 227 9 0 chr4 133767681 133767791 -21862329 - ID_B1 SINE B4 -28 196 86 7 1605 213 108 0 0 chr4 133768469 133768506 -21861614 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 7 1605 783 194 9 0 chr4 133768509 133768837 -21861283 + (CA)n Simple_repeat Simple_repeat 1 331 0 7 1605 207 0 0 0 chr4 133769437 133769460 -21860660 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1605 247 279 49 37 chr4 133769891 133769973 -21860147 - ID4_ SINE ID 0 83 1 7 1605 357 145 0 0 chr4 133770203 133770265 -21859855 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1605 446 221 156 0 chr4 133770265 133770387 -21859733 - B1_Mus1 SINE Alu -6 142 2 7 1605 543 244 68 113 chr4 133770392 133770614 -21859506 - B3 SINE B2 0 216 5 7 1605 811 178 0 20 chr4 133770906 133771055 -21859065 - B1_Mm SINE Alu -1 146 1 7 1605 181 259 60 24 chr4 133771444 133771527 -21858593 - MIRc SINE MIR -72 196 111 7 1605 254 268 58 47 chr4 133771531 133771608 -21858512 + PB1D10 SINE Alu 27 108 -9 7 1605 324 0 0 0 chr4 133771608 133771644 -21858476 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1605 475 313 109 0 chr4 133771651 133771798 -21858322 + ID_B1 SINE B4 5 167 -57 7 1605 279 308 27 110 chr4 133771870 133771951 -21858169 + B4 SINE B4 13 82 -210 7 1605 336 102 0 0 chr4 133771951 133772000 -21858120 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 7 1605 398 296 0 0 chr4 133772003 133772084 -21858036 + PB1D7 SINE Alu 1 81 -39 7 1605 448 195 47 0 chr4 133772142 133772249 -21857871 - B1_Mur2 SINE Alu -28 122 7 7 1605 673 243 0 40 chr4 133772294 133772308 -21857812 - B1_Mur1 SINE Alu 0 149 141 7 1605 486 0 0 0 chr4 133772308 133772362 -21857758 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1605 673 243 0 40 chr4 133772362 133772497 -21857623 - B1_Mur1 SINE Alu -9 140 6 7 1605 483 269 38 75 chr4 133772497 133772574 -21857546 - ID_B1 SINE B4 -75 217 13 7 1605 230 296 171 0 chr4 133772573 133772661 -21857459 - ID_B1 SINE B4 -116 108 6 7 1605 341 273 11 22 chr4 133772687 133772777 -21857343 - PB1D10 SINE Alu 0 117 29 7 1605 1023 54 0 0 chr4 133773129 133773259 -21856861 + (TTC)n Simple_repeat Simple_repeat 1 130 0 7 1605 277 50 66 16 chr4 133773268 133773329 -21856791 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 1605 1242 52 0 0 chr4 133773332 133773485 -21856635 - B2_Mm2 SINE B2 -41 154 2 7 1605 307 226 60 86 chr4 133774762 133774878 -21855242 + MT2B LTR ERVL 166 278 -323 7 1605 608 147 27 9 chr4 133774791 133774891 -21855229 + B1_Mur1 SINE Alu 36 137 -12 8 1605 627 14 0 0 chr4 133774891 133774963 -21855157 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 8 1605 3433 139 219 13 chr4 133775462 133776141 -21853979 + RMER19B LTR ERVK 1 819 -83 8 1605 782 150 38 0 chr4 133776134 133776267 -21853853 + ORR1C2 LTR MaLR 247 384 0 8 1605 358 339 0 9 chr4 133776664 133776780 -21853340 - PB1D10 SINE Alu -1 116 2 8 1605 259 176 137 0 chr4 133776835 133776886 -21853234 + PB1 SINE Alu 67 124 -3 8 1605 356 338 66 20 chr4 133776940 133777091 -21853029 + MER58A DNA MER1_type 61 218 -6 8 1605 468 0 0 0 chr4 133777259 133777311 -21852809 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1605 450 0 0 0 chr4 133777613 133777663 -21852457 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1605 431 0 37 0 chr4 133778339 133778393 -21851727 + (TTTTA)n Simple_repeat Simple_repeat 4 59 0 8 1605 419 149 68 0 chr4 133778407 133778481 -21851639 - ID_B1 SINE B4 -6 218 140 8 1605 478 261 75 23 chr4 133778594 133778727 -21851393 + RSINE1 SINE B4 2 141 -24 8 1605 189 0 0 0 chr4 133778728 133778749 -21851371 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1605 229 148 16 32 chr4 133778772 133778835 -21851285 + CT-rich Low_complexity Low_complexity 2 63 0 8 1605 253 250 17 0 chr4 133779458 133779518 -21850602 + ID4_ SINE ID 21 81 -2 8 1605 196 350 89 0 chr4 133779548 133779671 -21850449 + L2 LINE L2 2658 2791 -628 8 1605 268 89 22 0 chr4 133779821 133779866 -21850254 - B3A SINE B2 -152 46 1 8 1605 224 359 19 107 chr4 133780079 133780238 -21849882 + ID_B1 SINE B4 79 223 -1 8 1605 490 295 0 0 chr4 133780265 133780370 -21849750 + PB1D10 SINE Alu 4 108 -9 8 1605 382 123 110 0 chr4 133780553 133780626 -21849494 - HAL1-3A_ME LINE L1 -809 2049 1969 8 1605 468 258 0 0 chr4 133780626 133781086 -21849034 + (TG)n Simple_repeat Simple_repeat 1 460 0 8 1605 225 256 0 0 chr4 133781101 133781183 -21848937 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1605 1258 31 12 0 chr4 133781271 133781433 -21848687 + B2_Mm2 SINE B2 1 164 -31 8 1605 246 62 0 0 chr4 133781438 133781470 -21848650 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1605 292 286 93 133 chr4 133781485 133781711 -21848409 - B4A SINE B4 -74 218 2 8 1605 827 131 24 5 chr4 133781831 133782249 -21847871 + (CCTG)n Simple_repeat Simple_repeat 1 426 0 8 1605 339 25 0 0 chr4 133782361 133782401 -21847719 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1605 535 188 51 0 chr4 133785740 133785856 -21844264 - B1F1 SINE Alu -3 146 26 8 1605 231 222 25 35 chr4 133785898 133785990 -21844130 - MIR SINE MIR -59 209 117 8 1605 1527 43 16 16 chr4 133786786 133786977 -21843143 + B2_Mm2 SINE B2 2 192 -3 8 1605 210 361 81 8 chr4 133786992 133787115 -21843005 + L2b LINE L2 3244 3375 0 8 1605 405 274 161 0 chr4 133787243 133787367 -21842753 - RSINE1 SINE B4 -16 149 6 8 1605 318 227 0 43 chr4 133787373 133787442 -21842678 - B1F SINE Alu -6 143 78 8 1605 518 240 151 72 chr4 133787442 133787565 -21842555 - B3 SINE B2 -37 179 39 8 1605 1354 91 16 0 chr4 133787565 133787751 -21842369 + B2_Mm1a SINE B2 1 189 -4 8 1605 518 240 151 72 chr4 133787751 133787793 -21842327 - B3 SINE B2 -178 38 1 8 1605 306 0 0 0 chr4 133788330 133788364 -21841756 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1605 222 208 19 19 chr4 133791200 133791254 -21838866 - L2a LINE L2 -31 3395 3342 8 1605 450 274 15 61 chr4 133791396 133791528 -21838592 + RSINE1 SINE B4 3 128 -37 8 1605 270 0 0 0 chr4 133791542 133791572 -21838548 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1605 642 158 18 0 chr4 133792498 133792612 -21837508 + B3 SINE B2 1 116 -100 8 1605 297 0 0 0 chr4 133792636 133792669 -21837451 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1605 509 186 57 29 chr4 133792858 133792963 -21837157 + PB1D9 SINE Alu 1 108 -12 8 1605 675 0 0 0 chr4 133792963 133793038 -21837082 + (CAAAA)n Simple_repeat Simple_repeat 4 78 0 8 1605 214 188 155 28 chr4 133793736 133793807 -21836313 + MIR SINE MIR 92 171 -91 8 1605 204 194 0 0 chr4 133794023 133794059 -21836061 + L2a LINE L2 3381 3416 -10 8 1605 478 238 0 65 chr4 133794531 133794639 -21835481 + B1F2 SINE Alu 49 149 0 8 1605 269 208 165 25 chr4 133794921 133795000 -21835120 + PB1D10 SINE Alu 28 117 0 8 1605 1609 32 21 0 chr4 133795250 133795438 -21834682 - B2_Mm1a SINE B2 0 193 2 8 1605 246 299 0 0 chr4 133795477 133795544 -21834576 - PB1 SINE Alu -20 107 41 8 1605 997 52 87 22 chr4 133795616 133795754 -21834366 - B1_Mus2 SINE Alu 0 147 1 8 1605 751 191 120 5 chr4 133795785 133795969 -21834151 + B3 SINE B2 1 205 -11 8 1605 198 71 0 0 chr4 133795979 133796007 -21834113 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1605 1152 64 13 0 chr4 133796012 133796168 -21833952 + B2_Mm2 SINE B2 1 158 -37 8 1605 495 0 0 0 chr4 133796169 133796224 -21833896 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 8 1605 689 56 0 0 chr4 133796250 133796340 -21833780 + B2_Mm2 SINE B2 69 158 -37 8 1605 531 0 0 0 chr4 133796341 133796400 -21833720 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 8 1605 209 109 22 0 chr4 133796436 133796482 -21833638 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 8 1605 229 268 16 8 chr4 133796507 133796526 -21833594 + ORR1B1-int LTR MaLR 630 649 -860 8 1605 659 179 26 0 chr4 133796526 133796643 -21833477 + B1_Mur2 SINE Alu 2 121 -28 8 1605 888 208 73 0 chr4 133796761 133796953 -21833167 + B3 SINE B2 2 207 -9 8 1605 830 139 163 6 chr4 133797080 133797246 -21832874 - B2_Mm2 SINE B2 -3 192 1 8 1605 426 321 71 0 chr4 133797281 133797421 -21832699 + RSINE1 SINE B4 3 152 -13 8 1605 226 318 55 92 chr4 133797405 133797471 -21832649 + MT2B LTR ERVL 101 160 -441 8 1605 541 219 85 8 chr4 133797471 133797600 -21832520 + B1_Mus2 SINE Alu 1 139 -8 8 1605 1210 41 14 0 chr4 133797899 133798044 -21832076 + B1_Mus1 SINE Alu 2 148 0 8 1605 486 267 90 34 chr4 133798095 133798273 -21831847 - ID_B1 SINE B4 -1 223 36 8 1605 606 151 381 0 chr4 133798299 133798425 -21831695 - B2_Mm1t SINE B2 -19 174 1 8 1605 932 146 28 0 chr4 133798476 133798620 -21831500 - B1_Mur2 SINE Alu 0 149 2 8 1605 238 307 13 0 chr4 133798675 133798750 -21831370 - ID4 SINE ID 0 83 8 8 1605 214 238 0 0 chr4 133798851 133798893 -21831227 + B4A SINE B4 82 123 -169 8 1605 1249 48 0 0 chr4 133798912 133799059 -21831061 - B1_Mus1 SINE Alu 0 148 2 8 1605 766 122 0 24 chr4 133799059 133799185 -21830935 + B1_Mur3 SINE Alu 27 149 0 8 1605 195 114 0 0 chr4 133802031 133802066 -21828054 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 8 1605 199 329 26 0 chr4 133803285 133803361 -21826759 + L3 LINE CR1 4289 4366 -123 8 1605 468 0 0 0 chr4 133804920 133804972 -21825148 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1605 239 218 0 18 chr4 133806794 133806850 -21823270 - MIRb SINE MIR -9 259 205 8 1605 249 267 39 26 chr4 133811561 133811638 -21818482 - PB1D10 SINE Alu 0 117 40 8 1605 216 329 61 86 chr4 133811590 133811753 -21818367 - ID_B1 SINE B4 -56 168 10 8 1605 242 56 0 27 chr4 133813002 133813039 -21817081 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8 1605 235 309 42 68 chr4 133813995 133814113 -21816007 - MIRb SINE MIR -1 267 153 8 1605 259 321 0 36 chr4 133814136 133814220 -21815900 - ID4 SINE ID -1 82 2 8 1605 1219 268 66 35 chr4 133814358 133814706 -21815414 - MTE2b LTR MaLR -16 363 5 8 1605 1079 136 3 14 chr4 133814707 133815069 -21815051 + (TG)n Simple_repeat Simple_repeat 1 358 0 8 1605 648 179 104 7 chr4 133815289 133815424 -21814696 - B1_Mur1 SINE Alu 0 149 2 8 1605 805 228 143 0 chr4 133815427 133815616 -21814504 - ID_B1 SINE B4 -8 216 1 8 1605 421 362 54 8 chr4 133815627 133815869 -21814251 + L2 LINE L2 2575 2827 -592 8 1605 208 309 0 0 chr4 133815877 133815932 -21814188 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1605 827 258 10 0 chr4 133815992 133816186 -21813934 + B3 SINE B2 1 196 -20 8 1605 1013 71 0 7 chr4 133816269 133816411 -21813709 - B1_Mus1 SINE Alu -1 147 7 8 1605 1405 75 0 16 chr4 133816444 133816634 -21813486 + B2_Mm2 SINE B2 2 188 -7 8 1605 694 172 8 0 chr4 133816636 133816758 -21813362 + B1_Mus1 SINE Alu 26 148 0 8 1605 418 358 44 0 chr4 133816933 133817070 -21813050 - ID_B1 SINE B4 -2 222 80 8 1605 581 211 92 46 chr4 133817235 133817409 -21812711 + B3 SINE B2 30 211 -5 8 1605 692 43 11 0 chr4 133817423 133817515 -21812605 + (TATG)n Simple_repeat Simple_repeat 4 96 0 8 1605 939 151 0 58 chr4 133817515 133817670 -21812450 - B1_Mus2 SINE Alu -1 146 1 8 1605 672 192 82 92 chr4 133817810 133818005 -21812115 - B3A SINE B2 -4 194 2 8 1605 222 213 21 0 chr4 133818660 133818707 -21811413 + ID4 SINE ID 3 50 -33 8 1605 315 0 0 0 chr4 133818714 133818749 -21811371 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1605 1073 68 7 27 chr4 133818753 133818903 -21811217 + B1_Mus2 SINE Alu 1 147 0 8 1605 3225 163 67 2 chr4 133819591 133820131 -21809989 - RMER15 LTR ERVL 0 575 1 8 1605 463 277 0 0 chr4 133820163 133820264 -21809856 + PB1D10 SINE Alu 1 101 -16 8 1605 340 322 49 33 chr4 133820349 133820471 -21809649 - L1M5 LINE L1 -3513 2633 2510 9 1605 1188 162 44 0 chr4 133820550 133820754 -21809366 - B3 SINE B2 0 216 4 9 1605 223 167 33 16 chr4 133821152 133821213 -21808907 + CT-rich Low_complexity Low_complexity 2 63 0 9 1605 1088 116 7 0 chr4 133821309 133821456 -21808664 + B1_Mur4 SINE Alu 2 149 -1 9 1605 219 286 65 0 chr4 133821502 133821579 -21808541 - ID4 SINE ID 0 83 2 9 1605 595 214 136 48 chr4 133821619 133821825 -21808295 - ID_B1 SINE B4 0 224 1 9 1605 200 111 28 0 chr4 133821836 133821872 -21808248 + (CCCCCT)n Simple_repeat Simple_repeat 6 42 0 9 1605 407 226 411 19 chr4 133821942 133822100 -21808020 - ID_B1 SINE B4 0 224 5 9 1605 462 247 6 2 chr4 133822809 133822911 -21807209 + PB1D10 SINE Alu 2 106 -44 9 1605 1133 66 156 6 chr4 133823090 133823257 -21806863 + B2_Mm2 SINE B2 1 192 -3 9 1605 712 261 13 0 chr4 133823268 133823425 -21806695 + RSINE1 SINE B4 3 161 -4 9 1605 1687 26 5 0 chr4 133823665 133823856 -21806264 - B2_Mm1a SINE B2 0 193 2 9 1605 806 255 10 10 chr4 133823950 133824152 -21805968 - B3 SINE B2 -8 208 7 9 1606 305 244 13 13 chr4 133824622 133824701 -21805419 + MTD LTR MaLR 1 79 -340 9 1606 240 246 0 104 chr4 133824820 133824897 -21805223 - L1MCa LINE L1 -6327 181 113 9 1606 467 165 0 19 chr4 133824909 133825018 -21805102 - B1F SINE Alu -43 106 3 9 1606 483 234 86 0 chr4 133825142 133825270 -21804850 - B1_Mur1 SINE Alu -9 140 2 9 1606 966 171 20 51 chr4 133825472 133825500 -21804620 - B2_Mm2 SINE B2 0 195 169 9 1606 1303 89 38 16 chr4 133825500 133825683 -21804437 + B2_Mm2 SINE B2 1 187 -8 9 1606 966 171 20 51 chr4 133825683 133825851 -21804269 - B2_Mm2 SINE B2 -27 168 5 9 1606 312 91 0 0 chr4 133825862 133825906 -21804214 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 9 1606 1047 84 0 0 chr4 133825906 133826049 -21804071 - B1_Mus1 SINE Alu 0 148 6 9 1606 1123 122 16 24 chr4 133826184 133826405 -21803715 - LTRIS5 LTR ERV1 0 512 227 9 1606 338 123 62 0 chr4 133826413 133826478 -21803642 - LTRIS5 LTR ERV1 -376 71 3 9 1606 470 56 167 0 chr4 133826489 133826561 -21803559 + B1_Mm SINE Alu 52 135 -12 9 1606 342 0 0 0 chr4 133826561 133826599 -21803521 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 9 1606 1291 203 29 20 chr4 133826653 133827074 -21803046 + MT2A LTR ERVL 1 469 -64 9 1606 255 260 0 0 chr4 133827480 133827530 -21802590 + PB1D10 SINE Alu 3 52 -65 9 1606 946 140 7 7 chr4 133827717 133827861 -21802259 - B1_Mus1 SINE Alu 0 148 5 9 1606 788 177 7 39 chr4 133827864 133828017 -21802103 - B1_Mur1 SINE Alu -1 148 1 9 1606 227 258 30 0 chr4 133828044 133828110 -21802010 - ID4 SINE ID -15 68 1 9 1606 942 258 24 0 chr4 133828125 133828334 -21801786 + ID_B1 SINE B4 8 221 -3 9 1606 278 270 160 34 chr4 133828587 133828706 -21801414 + Charlie4z DNA MER1_type 1 134 -33 9 1606 264 158 38 2 chr4 133828802 133828860 -21801260 - B1_Mur1 SINE Alu 0 149 91 9 1606 184 286 0 0 chr4 133828917 133828959 -21801161 - MIRc SINE MIR -111 157 116 9 1606 426 39 0 0 chr4 133829157 133829209 -21800911 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 9 1606 480 101 34 0 chr4 133829218 133829307 -21800813 + (TC)n Simple_repeat Simple_repeat 1 92 0 9 1606 616 76 22 0 chr4 133829787 133829879 -21800241 - B1_Mus2 SINE Alu -12 135 42 9 1606 370 82 51 76 chr4 133829809 133829888 -21800232 - MT2B LTR ERVL -337 264 188 9 1606 435 190 108 33 chr4 133830075 133830195 -21799925 - B1_Mus1 SINE Alu -19 129 1 9 1606 654 219 129 16 chr4 133830296 133830482 -21799638 + B3 SINE B2 2 208 -8 9 1606 1259 41 0 0 chr4 133830530 133830676 -21799444 - B1_Mus2 SINE Alu 0 147 2 9 1606 221 236 6 6 chr4 133831453 133831524 -21798596 - MIRm SINE MIR -11 265 189 9 1606 831 233 25 49 chr4 133831617 133831820 -21798300 - B3A SINE B2 0 198 1 9 1606 223 250 21 0 chr4 133831863 133831911 -21798209 + MIRm SINE MIR 228 276 0 9 1606 328 250 12 12 chr4 133832067 133832148 -21797972 + ID4 SINE ID 1 81 -2 9 1606 376 225 14 0 chr4 133832623 133832694 -21797426 - ID4 SINE ID -3 80 9 9 1606 377 268 65 97 chr4 133835082 133835268 -21794852 + B2_Mm2 SINE B2 2 181 -14 9 1606 724 164 20 46 chr4 133835283 133835436 -21794684 - B1_Mur3 SINE Alu 0 149 1 9 1606 344 260 9 80 chr4 133835335 133835448 -21794672 - MT2B LTR ERVL -344 257 153 9 1606 234 275 107 82 chr4 133835448 133835483 -21794637 + YREP_Mm Unknown Unknown 177 361 -1451 9 1606 1119 75 0 33 chr4 133835513 133835665 -21794455 - B1_Mus1 SINE Alu 0 148 2 9 1606 381 214 12 12 chr4 133835710 133835795 -21794325 + RCHARR1 DNA MER1_type 46 130 -844 9 1606 677 221 30 12 chr4 133835790 133835955 -21794165 + RCHARR1 DNA MER1_type 313 480 -494 9 1606 441 268 124 16 chr4 133835974 133836103 -21794017 - ID_B1 SINE B4 0 224 82 9 1606 213 303 106 0 chr4 133836100 133836166 -21793954 + PB1D10 SINE Alu 45 117 0 9 1606 1342 75 43 0 chr4 133836195 133836381 -21793739 + B2_Mm2 SINE B2 1 194 -1 9 1606 741 96 9 1 chr4 133836396 133836508 -21793612 + B1_Mus1 SINE Alu 2 119 -1 9 1606 341 254 0 0 chr4 133836536 133836603 -21793517 + B4A SINE B4 85 151 -141 9 1606 650 178 174 17 chr4 133836609 133836781 -21793339 + RCHARR1 DNA MER1_type 552 750 -224 9 1606 349 315 0 0 chr4 133836807 133836899 -21793221 - RSINE1 SINE B4 -71 94 3 9 1606 854 244 101 4 chr4 133836899 133837122 -21792998 + RCHARR1 DNA MER1_type 728 974 0 9 1606 1191 77 71 0 chr4 133837218 133837386 -21792734 + B2_Mm2 SINE B2 2 181 -14 9 1606 26 0 0 0 chr4 133837425 133837451 -21792669 + AT_rich Low_complexity Low_complexity 1 26 0 9 1606 253 248 236 9 chr4 133838132 133838242 -21791878 - B1F1 SINE Alu -13 136 2 9 1606 625 224 52 15 chr4 133838567 133838703 -21791417 + B1_Mur1 SINE Alu 2 142 -7 9 1606 473 313 26 13 chr4 133839304 133839456 -21790664 - RSINE1 SINE B4 -8 157 4 9 1606 23 68 0 0 chr4 133839476 133839520 -21790600 + AT_rich Low_complexity Low_complexity 1 44 0 9 1606 300 231 0 124 chr4 133839553 133839642 -21790478 - RSINE1 SINE B4 0 165 88 9 1606 284 309 12 0 chr4 133839656 133839737 -21790383 - ID_B1 SINE B4 -29 195 114 9 1606 314 284 75 82 chr4 133840664 133840810 -21789310 - B1F2 SINE Alu 0 149 5 9 1606 317 326 75 3 chr4 133840850 133841009 -21789111 - B4A SINE B4 -114 178 1 9 1606 574 182 36 0 chr4 133841023 133841133 -21788987 - PB1D9 SINE Alu -6 114 1 9 1606 234 253 147 71 chr4 133841196 133841366 -21788754 - B2_Mm1a SINE B2 -8 185 3 9 1606 629 266 8 0 chr4 133841241 133841369 -21788751 - RSINE1 SINE B4 -36 129 1 9 1606 856 148 15 0 chr4 133841519 133841654 -21788466 + B1_Mus1 SINE Alu 10 146 -2 9 1606 768 251 159 78 chr4 133844676 133845060 -21785060 - MTD LTR MaLR 0 419 5 9 1606 773 147 61 23 chr4 133845186 133845318 -21784802 - B1_Mur1 SINE Alu -9 140 4 9 1606 445 258 7 88 chr4 133845359 133845414 -21784706 - RSINE1 SINE B4 -38 127 75 9 1606 1774 135 11 112 chr4 133845414 133845780 -21784340 + ORR1A4 LTR MaLR 1 329 0 9 1606 445 258 7 88 chr4 133845780 133845860 -21784260 - RSINE1 SINE B4 -91 74 3 9 1606 526 171 34 0 chr4 133845983 133846083 -21784037 + PB1D9 SINE Alu 6 110 -40 9 1606 248 312 71 9 chr4 133846083 133846096 -21784024 + B4 SINE B4 91 210 -82 9 1606 751 185 22 58 chr4 133846410 133846548 -21783572 + B1_Mur2 SINE Alu 10 142 -7 9 1606 1023 128 0 7 chr4 133846564 133846713 -21783407 + B1_Mus1 SINE Alu 1 148 0 9 1606 241 196 19 19 chr4 133846713 133846755 -21783365 + polypurine Low_complexity Low_complexity 11 53 0 9 1606 1291 167 136 44 chr4 133846764 133847058 -21783062 - ORR1A4 LTR MaLR -8 321 1 9 1606 1563 53 0 5 chr4 133847126 133847315 -21782805 + B2_Mm1t SINE B2 1 188 -5 9 1606 544 327 43 0 chr4 133847857 133848065 -21782055 - ID_B1 SINE B4 -6 218 2 9 1606 406 260 53 34 chr4 133848573 133848705 -21781415 - MIRb SINE MIR -44 218 82 9 1606 498 295 0 93 chr4 133848715 133848876 -21781244 + ID_B1 SINE B4 78 223 -1 9 1606 252 287 109 0 chr4 133850203 133850304 -21779816 + PB1D10 SINE Alu 1 112 -5 9 1606 656 243 138 22 chr4 133850316 133850497 -21779623 + ID_B1 SINE B4 1 202 -22 9 1606 334 258 0 82 chr4 133850401 133850511 -21779609 + PB1D7 SINE Alu 7 107 -13 9 1606 580 66 0 0 chr4 133850527 133850618 -21779502 + L1Md_F2 LINE L1 6492 6582 0 9 1606 691 236 6 48 chr4 133850810 133850975 -21779145 + RSINE1 SINE B4 8 165 0 9 1606 211 390 43 32 chr4 133850975 133850997 -21779123 + B3A SINE B2 7 195 -3 9 1606 575 244 82 35 chr4 133851498 133851668 -21778452 - ID_B1 SINE B4 -2 222 45 9 1606 1133 67 20 0 chr4 133851995 133852145 -21777975 + B2_Mm1t SINE B2 27 179 -14 9 1606 729 237 39 88 chr4 133852142 133852346 -21777774 - B3A SINE B2 -4 194 1 9 1606 531 0 0 0 chr4 133852353 133852412 -21777708 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 9 1606 544 183 122 84 chr4 133852414 133852545 -21777575 - B1_Mur2 SINE Alu -13 136 1 9 1606 453 165 66 34 chr4 133852637 133852747 -21777373 + B3 SINE B2 2 113 -103 9 1606 732 219 12 24 chr4 133852902 133853070 -21777050 - B2_Mm2 SINE B2 -27 168 3 9 1606 1546 176 63 13 chr4 133853300 133853600 -21776520 + MTC LTR MaLR 104 418 -3 9 1606 185 241 0 53 chr4 133854281 133854338 -21775782 - L2a LINE L2 -252 3174 3121 9 1606 27 62 0 0 chr4 133854339 133854387 -21775733 + AT_rich Low_complexity Low_complexity 1 48 0 1 1606 531 0 0 0 chr4 133854390 133854449 -21775671 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1 1606 447 309 39 26 chr4 133854456 133854612 -21775508 - RSINE1 SINE B4 -5 160 3 1 1606 486 272 8 26 chr4 133854614 133854731 -21775389 - PB1D7 SINE Alu -1 119 5 1 1606 461 221 34 0 chr4 133854745 133854856 -21775264 - B1_Mur2 SINE Alu 0 149 33 1 1606 180 0 0 0 chr4 133854858 133854878 -21775242 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1606 1236 61 0 0 chr4 133854896 133855043 -21775077 - B1_Mm SINE Alu 0 147 1 1 1606 207 0 0 0 chr4 133855232 133855255 -21774865 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 1 1606 255 263 0 0 chr4 133855346 133855403 -21774717 + C-rich Low_complexity Low_complexity 3 59 0 1 1606 562 194 13 124 chr4 133856819 133856972 -21773148 - B1_Mur1 SINE Alu -13 136 1 1 1606 447 214 29 48 chr4 133856978 133857081 -21773039 - PB1D10 SINE Alu -3 114 14 1 1606 414 329 6 89 chr4 133857007 133857164 -21772956 - ID_B1 SINE B4 -55 169 26 1 1606 252 0 0 0 chr4 133857192 133857220 -21772900 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1 1606 609 257 0 46 chr4 133857229 133857380 -21772740 - RSINE1 SINE B4 0 165 22 1 1606 462 265 0 10 chr4 133857378 133857481 -21772639 - PB1D10 SINE Alu -15 102 1 1 1606 337 314 9 9 chr4 133857386 133857492 -21772628 - ID_B1 SINE B4 -49 175 70 1 1606 456 274 63 49 chr4 133857584 133857726 -21772394 + ID_B1 SINE B4 73 216 -8 1 1606 920 142 7 0 chr4 133857736 133857877 -21772243 + B1_Mus2 SINE Alu 6 147 0 1 1606 215 135 27 0 chr4 133857898 133857935 -21772185 + G-rich Low_complexity Low_complexity 2 39 0 1 1606 302 79 15 45 chr4 133858703 133858769 -21771351 + (TCTCCC)n Simple_repeat Simple_repeat 4 67 0 1 1606 554 83 24 0 chr4 133858870 133858954 -21771166 + (CCCCCT)n Simple_repeat Simple_repeat 1 86 0 1 1606 2114 39 4 0 chr4 133858992 133859252 -21770868 - RLTR10-int LTR ERVK -1686 301 41 1 1606 3018 44 5 52 chr4 133859264 133859671 -21770449 - RLTR10 LTR ERVK -2 388 1 1 1606 494 273 101 0 chr4 133859897 133860036 -21770084 - RSINE1 SINE B4 -10 155 3 1 1606 1068 178 69 5 chr4 133860193 133860396 -21769724 + B3 SINE B2 1 216 0 1 1606 324 335 125 4 chr4 133860419 133860648 -21769472 - HAL1-3A_ME LINE L1 -419 2439 2274 1 1606 298 290 110 0 chr4 133860649 133860749 -21769371 - PB1D7 SINE Alu -9 111 1 1 1606 1502 58 11 0 chr4 133860922 133861112 -21769008 - B2_Mm1a SINE B2 0 193 2 1 1606 588 204 79 21 chr4 133861269 133861409 -21768711 - B1F2 SINE Alu 0 149 2 1 1606 1092 106 0 0 chr4 133861414 133861575 -21768545 + (TTCC)n Simple_repeat Simple_repeat 3 163 0 1 1606 705 271 19 18 chr4 133861577 133861748 -21768372 - ID_B1 SINE B4 -14 210 35 1 1606 597 158 0 0 chr4 133862078 133862217 -21767903 + (TG)n Simple_repeat Simple_repeat 1 139 0 1 1606 180 0 0 0 chr4 133862605 133862625 -21767495 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 1 1606 510 17 0 0 chr4 133862625 133862683 -21767437 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1606 434 283 18 9 chr4 133862693 133862807 -21767313 + PB1D7 SINE Alu 1 115 -5 1 1606 1027 205 19 9 chr4 133862918 133863130 -21766990 - B3 SINE B2 -1 215 2 1 1606 513 0 0 0 chr4 133863805 133863862 -21766258 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1606 302 181 143 12 chr4 133863876 133863960 -21766160 - MLT1B LTR MaLR -3 387 293 1 1606 25 0 0 0 chr4 133864039 133864064 -21766056 + AT_rich Low_complexity Low_complexity 1 25 0 1 1606 241 302 72 87 chr4 133864322 133864460 -21765660 + MLT1F LTR MaLR 6 141 -419 1 1606 466 283 71 14 chr4 133864448 133864588 -21765532 + RSINE1 SINE B4 7 154 -11 1 1606 471 297 122 5 chr4 133864746 133864942 -21765178 + MLT1F LTR MaLR 328 546 -2 1 1606 232 273 91 0 chr4 133864966 133865032 -21765088 + PB1D10 SINE Alu 41 112 -5 1 1606 502 291 0 0 chr4 133865043 133865170 -21764950 + B1F1 SINE Alu 4 130 -19 1 1606 945 273 24 0 chr4 133865170 133865379 -21764741 + ID_B1 SINE B4 9 222 -2 1 1606 237 278 3 7 chr4 133865551 133865635 -21764485 - MIR SINE MIR -41 167 84 1 1606 504 48 0 0 chr4 133865815 133865878 -21764242 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 1606 924 157 14 0 chr4 133865883 133866023 -21764097 - B1_Mur3 SINE Alu -6 143 2 1 1606 305 363 8 61 chr4 133866977 133867109 -21763011 + PB1 SINE Alu 1 125 -2 1 1606 366 270 61 35 chr4 133867116 133867231 -21762889 - Lx8 LINE L1 -682 6791 6674 1 1606 549 202 0 0 chr4 133867245 133867344 -21762776 + PB1D9 SINE Alu 10 108 -12 1 1606 187 350 79 40 chr4 133867471 133867673 -21762447 + MIR SINE MIR 43 252 -10 1 1606 321 252 149 14 chr4 133867678 133867819 -21762301 + MIRc SINE MIR 42 201 -67 1 1606 439 331 27 11 chr4 133868198 133868381 -21761739 + MIR SINE MIR 69 254 -8 1 1606 221 167 73 18 chr4 133868410 133868465 -21761655 - PB1D10 SINE Alu -10 107 50 1 1606 264 319 21 55 chr4 133868581 133868674 -21761446 - ID4 SINE ID -64 88 4 1 1606 1020 190 108 0 chr4 133868710 133868905 -21761215 - B3 SINE B2 0 216 1 1 1606 763 232 37 0 chr4 133868924 133869088 -21761032 - B3 SINE B2 0 216 47 1 1606 1241 54 0 0 chr4 133869121 133869268 -21760852 + B1_Mus2 SINE Alu 1 147 0 1 1606 308 152 0 32 chr4 133869268 133869363 -21760757 + A-rich Low_complexity Low_complexity 1 92 0 1 1606 383 144 270 30 chr4 133869386 133869486 -21760634 + B1_Mus1 SINE Alu 25 148 0 1 1606 1558 58 21 0 chr4 133869491 133869679 -21760441 + B2_Mm1a SINE B2 1 192 -1 1 1606 414 229 113 9 chr4 133869779 133869885 -21760235 - PB1D10 SINE Alu 0 117 1 1 1606 1161 99 50 9 chr4 133869891 133870091 -21760029 - B2_Mm2 SINE B2 0 216 7 1 1606 263 138 48 79 chr4 133870087 133870150 -21759970 - PB1 SINE Alu -50 77 17 1 1606 328 146 18 0 chr4 133870387 133870442 -21759678 - RSINE1 SINE B4 -107 58 3 1 1606 197 33 0 32 chr4 133870662 133870693 -21759427 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 1 1606 207 179 0 0 chr4 133870730 133870769 -21759351 + G-rich Low_complexity Low_complexity 3 41 0 1 1606 210 118 0 0 chr4 133871443 133871477 -21758643 + (CTAGGG)n Simple_repeat Simple_repeat 1 34 0 1 1606 382 235 171 32 chr4 133871857 133871980 -21758140 + B1F SINE Alu 10 149 0 1 1606 212 271 0 20 chr4 133872041 133872090 -21758030 - MIR SINE MIR -136 126 79 1 1606 271 317 30 75 chr4 133872585 133872653 -21757467 - ID_B1 SINE B4 -93 131 65 1 1606 207 0 0 0 chr4 133872653 133872676 -21757444 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1606 271 317 30 75 chr4 133872676 133872700 -21757420 - ID SINE ID -160 64 5 1 1606 274 150 0 0 chr4 133872700 133872740 -21757380 - ID2 SINE ID -39 44 5 1 1606 212 317 15 73 chr4 133872739 133872807 -21757313 - PB1D10 SINE Alu -12 105 42 1 1606 252 287 41 103 chr4 133872822 133872919 -21757201 - B3 SINE B2 -11 205 115 1 1606 219 36 0 0 chr4 133872961 133872989 -21757131 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1606 859 209 93 15 chr4 133872992 133873208 -21756912 - MT2A LTR ERVL -141 460 99 1 1606 620 131 76 76 chr4 133873242 133873305 -21756815 - MT2A LTR ERVL -401 132 77 1 1606 1032 88 13 13 chr4 133873305 133873454 -21756666 + B1_Mur4 SINE Alu 1 149 -1 1 1606 620 131 76 76 chr4 133873454 133873522 -21756598 - MT2A LTR ERVL -457 76 1 1 1606 539 189 94 0 chr4 133873526 133873632 -21756488 - B3A SINE B2 -80 118 3 1 1606 446 316 22 8 chr4 133873715 133873849 -21756271 + B1F1 SINE Alu 3 138 -11 1 1606 646 252 0 18 chr4 133874009 133874175 -21755945 - RSINE1 SINE B4 -1 164 2 1 1606 770 228 0 0 chr4 133874646 133874791 -21755329 + RSINE1 SINE B4 2 146 -19 1 1606 187 292 102 20 chr4 133875151 133875249 -21754871 + MIRm SINE MIR 32 137 -139 1 1606 588 227 28 70 chr4 133876150 133876292 -21753828 + B1_Mur1 SINE Alu 1 136 -13 1 1606 771 11 0 0 chr4 133876313 133876401 -21753719 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 1 1606 1250 69 6 0 chr4 133876401 133876560 -21753560 + B2_Mm1t SINE B2 1 160 -33 1 1606 934 172 4 20 chr4 133876562 133876813 -21753307 + GA-rich Low_complexity Low_complexity 1 246 0 1 1606 483 18 0 0 chr4 133876813 133876869 -21753251 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1 1606 292 326 62 82 chr4 133877519 133877557 -21752563 + YREP_Mm Unknown Unknown 105 131 -1681 1 1606 1290 140 24 24 chr4 133877557 133877769 -21752351 - B3 SINE B2 -2 214 3 1 1606 292 326 62 82 chr4 133877769 133877800 -21752320 + YREP_Mm Unknown Unknown 132 172 -1640 1 1606 525 118 318 0 chr4 133877800 133877910 -21752210 - B1_Mus2 SINE Alu -1 146 2 1 1606 292 326 62 82 chr4 133877910 133878033 -21752087 + YREP_Mm Unknown Unknown 173 293 -1519 1 1606 651 219 0 0 chr4 133877918 133878037 -21752083 - ID_B1 SINE B4 -6 218 100 1 1606 562 243 81 0 chr4 133878037 133878050 -21752070 - B1F SINE Alu -2 143 1 1 1606 659 217 47 21 chr4 133878125 133878284 -21751836 + ID_B1 SINE B4 84 246 -46 1 1606 588 208 176 0 chr4 133878347 133878472 -21751648 + B1_Mur1 SINE Alu 3 149 0 1 1606 211 235 20 0 chr4 133878472 133878523 -21751597 + GA-rich Low_complexity Low_complexity 1 52 0 1 1606 1141 96 0 0 chr4 133878525 133878671 -21751449 + B1_Mus2 SINE Alu 1 146 -1 1 1606 228 35 0 0 chr4 133878675 133878704 -21751416 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 1 1606 800 187 0 43 chr4 133879365 133879505 -21750615 + B1_Mur1 SINE Alu 2 135 -14 1 1606 210 71 0 0 chr4 133879505 133879533 -21750587 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1606 211 171 0 0 chr4 133879548 133879583 -21750537 + B3A SINE B2 6 40 -158 1 1606 1106 165 5 5 chr4 133879576 133879611 -21750509 - B2_Mm2 SINE B2 -4 191 157 1 1606 459 0 0 0 chr4 133879611 133879662 -21750458 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 1 1606 1106 165 5 5 chr4 133879662 133879815 -21750305 - B2_Mm2 SINE B2 -39 156 4 1 1606 630 203 0 121 chr4 133879816 133879874 -21750246 + B1_Mur4 SINE Alu 13 69 -81 1 1606 1423 71 22 0 chr4 133879874 133880058 -21750062 - B2_Mm1a SINE B2 -4 189 2 1 1606 630 203 0 121 chr4 133880058 133880156 -21749964 + B1_Mur4 SINE Alu 70 150 0 1 1606 858 249 5 21 chr4 133880184 133880377 -21749743 + B3 SINE B2 27 216 0 1 1606 718 257 7 7 chr4 133880408 133880557 -21749563 + B3A SINE B2 1 149 -49 1 1606 432 0 0 0 chr4 133880562 133880610 -21749510 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 1606 646 209 7 36 chr4 133881723 133881862 -21748258 - B1_Mur2 SINE Alu -14 135 1 1 1606 236 236 0 18 chr4 133881885 133881941 -21748179 + MIRm SINE MIR 214 268 -8 1 1606 283 300 0 48 chr4 133881944 133882028 -21748092 + MIRb SINE MIR 25 104 -164 1 1606 311 281 17 14 chr4 133882118 133882204 -21747916 + PB1D10 SINE Alu 25 116 -33 1 1606 428 292 0 2 chr4 133882282 133882392 -21747728 - B1_Mur2 SINE Alu -39 110 2 1 1606 272 327 36 18 chr4 133882498 133882610 -21747510 - MIRc SINE MIR -120 148 35 1 1606 487 209 0 27 chr4 133882797 133882908 -21747212 - PB1D7 SINE Alu 0 120 13 1 1606 229 167 16 32 chr4 133883050 133883112 -21747008 + G-rich Low_complexity Low_complexity 5 65 0 1 1606 189 0 0 0 chr4 133883621 133883642 -21746478 + (GGA)n Simple_repeat Simple_repeat 2 22 0 1 1606 666 321 54 32 chr4 133883839 133884116 -21746004 - B4A SINE B4 -2 290 8 1 1606 323 234 8 0 chr4 133884131 133884255 -21745865 + CT-rich Low_complexity Low_complexity 3 127 0 1 1606 245 185 0 18 chr4 133884257 133884312 -21745808 - B1F1 SINE Alu -28 121 68 1 1606 1351 123 25 80 chr4 133884414 133884652 -21745468 + URR1B DNA MER1_type 1 225 0 1 1606 944 143 0 7 chr4 133885355 133885503 -21744617 + B1_Mur1 SINE Alu 2 148 -1 1 1606 237 207 0 0 chr4 133885580 133885662 -21744458 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1606 316 257 29 38 chr4 133885748 133885852 -21744268 + PB1D9 SINE Alu 22 117 -31 1 1606 262 334 123 65 chr4 133885932 133886345 -21743775 - LTR16D LTR ERVL -56 595 159 1 1606 677 157 101 36 chr4 133886665 133886804 -21743316 + B1_Mur1 SINE Alu 1 148 -1 1 1606 582 220 75 8 chr4 133886826 133886959 -21743161 + ID_B1 SINE B4 82 223 -1 1 1606 327 325 41 0 chr4 133886967 133887090 -21743030 + B1F1 SINE Alu 1 128 -21 1 1606 323 348 130 19 chr4 133887109 133887270 -21742850 + ID_B1 SINE B4 2 180 -44 1 1606 570 67 0 0 chr4 133887278 133887353 -21742767 + (TATG)n Simple_repeat Simple_repeat 4 78 0 1 1606 3191 56 10 2 chr4 133887353 133887749 -21742371 - MTB LTR MaLR -1 399 1 1 1606 744 12 0 0 chr4 133887750 133887835 -21742285 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 1 1606 1586 91 27 0 chr4 133887835 133888055 -21742065 - ORR1A3 LTR MaLR -9 318 93 1 1606 1202 77 49 6 chr4 133888051 133888079 -21742041 - B2_Mm2 SINE B2 -2 193 159 1 1606 188 67 0 32 chr4 133888079 133888110 -21742010 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1606 1202 77 49 6 chr4 133888110 133888264 -21741856 - B2_Mm2 SINE B2 -37 158 4 1 1606 1827 102 76 39 chr4 133888264 133888356 -21741764 - ORR1A3 LTR MaLR -216 110 1 1 1606 7350 108 23 8 chr4 133888356 133889542 -21740578 - ORR1A3-int LTR MaLR 0 1963 760 1 1606 523 193 68 34 chr4 133889522 133889640 -21740480 - B1_Mm SINE Alu -23 124 3 1 1606 549 0 0 0 chr4 133889902 133889963 -21740157 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1606 580 152 107 0 chr4 133890057 133890169 -21739951 - B1_Mur2 SINE Alu -7 142 19 1 1606 248 337 129 11 chr4 133890184 133890277 -21739843 - PB1D10 SINE Alu -13 104 1 1 1606 1251 105 50 6 chr4 133890490 133890672 -21739448 - B2_Mm2 SINE B2 -5 190 1 1 1606 217 75 24 24 chr4 133890681 133890722 -21739398 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1 1606 1352 94 0 11 chr4 133890770 133890930 -21739190 + B2_Mm1t SINE B2 1 160 -33 1 1606 459 0 0 0 chr4 133890930 133890981 -21739139 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 1606 1352 94 0 11 chr4 133890981 133891003 -21739117 + B2_Mm1t SINE B2 161 181 -12 1 1606 933 206 85 0 chr4 133891096 133891295 -21738825 + B3 SINE B2 1 216 0 1 1606 299 313 121 9 chr4 133891850 133891966 -21738154 - RSINE1 SINE B4 -25 140 12 1 1606 338 213 113 31 chr4 133892042 133892139 -21737981 + PB1D10 SINE Alu 5 109 -8 1 1606 1487 74 16 0 chr4 133892151 133892341 -21737779 + B2_Mm2 SINE B2 2 194 -1 1 1606 1666 248 49 62 chr4 133892479 133892831 -21737289 - RMER15 LTR ERVL -15 560 207 1 1606 180 0 0 0 chr4 133892840 133892860 -21737260 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1606 770 203 0 33 chr4 133892860 133893003 -21737117 - B1_Mus1 SINE Alu -8 140 1 1 1606 1666 248 49 62 chr4 133893003 133893179 -21736941 - RMER15 LTR ERVL -369 206 39 1 1606 1243 54 0 0 chr4 133893289 133893436 -21736684 + B1_Mus1 SINE Alu 2 148 0 1 1606 349 154 36 11 chr4 133893623 133893713 -21736407 - B1F2 SINE Alu -2 115 25 1 1606 399 299 32 52 chr4 133893716 133893871 -21736249 - B3 SINE B2 -5 211 60 1 1606 518 184 18 35 chr4 133893884 133893997 -21736123 - PB1D9 SINE Alu -1 119 9 1 1606 329 258 191 23 chr4 133893997 133894015 -21736105 - ID_B1 SINE B4 -2 222 70 1 1606 266 204 0 0 chr4 133894010 133894064 -21736056 - B3 SINE B2 -162 54 1 1 1606 237 83 0 0 chr4 133894097 133894133 -21735987 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1606 260 211 35 0 chr4 133894133 133894190 -21735930 - ID4_ SINE ID -19 64 6 1 1606 2721 54 109 101 chr4 133894383 133894879 -21735241 - MURVY-LTR LTR ERV1 -19 500 1 1 1606 576 283 191 23 chr4 133894897 133895201 -21734919 - MER21B LTR ERV1 -209 654 300 1 1606 234 292 159 0 chr4 133895428 133895446 -21734674 + B1F SINE Alu 19 149 0 1 1606 295 245 105 11 chr4 133895446 133895541 -21734579 + ID_B1 SINE B4 121 224 0 1 1606 388 268 26 18 chr4 133895559 133895673 -21734447 + PB1D10 SINE Alu 1 115 -2 1 1606 315 0 0 0 chr4 133895704 133895739 -21734381 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1606 738 208 0 40 chr4 133895801 133895951 -21734169 + B1_Mur3 SINE Alu 6 149 0 1 1606 1237 35 7 0 chr4 133896030 133896175 -21733945 - B1_Mus2 SINE Alu 0 147 2 1 1606 220 320 40 13 chr4 133896278 133896354 -21733766 - ID4_ SINE ID -4 79 2 1 1606 212 273 0 0 chr4 133896356 133896400 -21733720 - PB1 SINE Alu -2 125 82 1 1606 658 263 32 53 chr4 133896698 133896887 -21733233 - ID_B1 SINE B4 -1 223 39 1 1606 3055 82 63 100 chr4 133897016 133897555 -21732565 - MURVY-LTR LTR ERV1 0 519 1 1 1606 908 155 6 51 chr4 133897797 133897953 -21732167 + B1_Mur3 SINE Alu 1 149 0 1 1606 1380 62 0 0 chr4 133897979 133898158 -21731962 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1606 186 43 0 0 chr4 133898161 133898184 -21731936 + (GAGAA)n Simple_repeat Simple_repeat 1 23 0 1 1606 676 154 123 0 chr4 133898647 133898777 -21731343 - B1_Mus2 SINE Alu 0 147 2 1 1606 441 0 0 0 chr4 133900139 133900188 -21729932 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1606 287 104 21 0 chr4 133900273 133900321 -21729799 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1 1606 305 224 184 0 chr4 133900323 133900421 -21729699 - B1_Mus2 SINE Alu 0 120 5 1 1606 210 355 13 0 chr4 133900353 133900429 -21729691 - ID_B1 SINE B4 -70 154 78 1 1606 602 130 45 18 chr4 133900452 133900562 -21729558 - B1_Mus1 SINE Alu -1 147 35 1 1606 22 0 0 0 chr4 133900576 133900598 -21729522 + AT_rich Low_complexity Low_complexity 1 22 0 1 1606 882 224 40 20 chr4 133900612 133900812 -21729308 + B3 SINE B2 13 216 0 1 1606 1535 215 23 36 chr4 133900887 133901093 -21729027 + RMER10B LTR ERVL 12 216 -182 1 1606 282 29 0 0 chr4 133901093 133901128 -21728992 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1606 1535 215 23 36 chr4 133901128 133901312 -21728808 + RMER10B LTR ERVL 217 396 -2 1 1606 737 129 21 41 chr4 133901341 133901486 -21728634 - B1_Mur4 SINE Alu 0 150 9 1 1606 539 172 81 16 chr4 133901512 133901636 -21728484 - B1_Mus1 SINE Alu -13 135 4 1 1606 393 283 16 32 chr4 133902049 133902173 -21727947 - ID_B1 SINE B4 -8 216 95 1 1606 300 281 25 19 chr4 133902188 133902291 -21727829 - PB1D10 SINE Alu -29 120 13 1 1606 409 221 45 0 chr4 133902845 133902941 -21727179 + B1_Mur2 SINE Alu 14 117 -3 1 1606 213 290 29 0 chr4 133903743 133903812 -21726308 + G-rich Low_complexity Low_complexity 1 71 0 1 1606 284 328 76 25 chr4 133904883 133905002 -21725118 + MIR3 SINE MIR 62 186 -22 1 1606 667 151 0 73 chr4 133905452 133905463 -21724657 - B1_Mur4 SINE Alu -1 149 141 1 1606 261 0 0 0 chr4 133905463 133905492 -21724628 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1606 667 157 2 72 chr4 133905492 133905636 -21724484 - B1_Mur4 SINE Alu -10 140 1 1 1606 2227 61 42 63 chr4 133905678 133906009 -21724111 - ORR1A2 LTR MaLR 0 327 4 1 1606 364 268 62 0 chr4 133906011 133906108 -21724012 - PB1D9 SINE Alu -13 107 5 1 1606 325 272 100 158 chr4 133906109 133906349 -21723771 - B4A SINE B4 -61 231 6 1 1606 390 221 276 45 chr4 133906352 133906434 -21723686 - B4 SINE B4 -99 193 97 1 1606 315 96 0 0 chr4 133906434 133906486 -21723634 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1606 390 221 276 45 chr4 133906486 133906559 -21723561 - B4 SINE B4 -196 96 3 1 1606 361 219 236 32 chr4 133906868 133906991 -21723129 - B1_Mur1 SINE Alu 0 149 2 1 1606 715 195 0 23 chr4 133907006 133907137 -21722983 - B1_Mur2 SINE Alu 0 149 22 1 1606 312 175 0 0 chr4 133907135 133907192 -21722928 - B3 SINE B2 -140 76 20 1 1606 359 143 159 84 chr4 133907481 133907588 -21722532 + PB1D10 SINE Alu 2 116 -1 1 1606 195 306 97 0 chr4 133907613 133907685 -21722435 - L2a LINE L2 -45 3381 3303 1 1606 887 217 32 60 chr4 133910384 133910600 -21719520 - B3 SINE B2 -6 210 1 1 1606 341 290 179 14 chr4 133910712 133910852 -21719268 - RSINE1 SINE B4 0 165 3 1 1606 213 256 0 0 chr4 133910853 133910896 -21719224 - PB1D9 SINE Alu -65 55 13 1 1606 262 232 38 57 chr4 133910888 133910993 -21719127 - PB1D10 SINE Alu -13 104 2 1 1606 480 237 42 127 chr4 133911292 133911310 -21718810 - B2_Mm2 SINE B2 0 195 180 1 1606 285 29 0 0 chr4 133911310 133911344 -21718776 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1606 739 210 28 43 chr4 133911344 133911538 -21718582 - B3 SINE B2 -34 182 1 1 1606 617 224 0 0 chr4 133912561 133912668 -21717452 + PB1D7 SINE Alu 1 107 -13 1 1606 798 172 27 14 chr4 133912710 133912857 -21717263 + B1_Mur3 SINE Alu 1 149 0 1 1606 221 345 46 0 chr4 133913328 133913415 -21716705 - L2b LINE L2 -250 3125 3035 1 1606 375 279 9 28 chr4 133914571 133914678 -21715442 + PB1D10 SINE Alu 1 105 -12 1 1606 755 222 139 11 chr4 133914679 133914866 -21715254 - ID_B1 SINE B4 -12 212 2 1 1606 739 93 0 0 chr4 133915343 133915450 -21714670 - B1_Mur3 SINE Alu 0 149 43 1 1606 233 254 16 98 chr4 133915349 133915471 -21714649 - B4A SINE B4 -71 221 110 1 1606 235 297 26 26 chr4 133916231 133916307 -21713813 - ID4 SINE ID -3 80 5 1 1606 1473 51 11 0 chr4 133916684 133916862 -21713258 + B2_Mm2 SINE B2 3 182 -13 1 1606 469 248 38 0 chr4 133916916 133917021 -21713099 + PB1D9 SINE Alu 5 113 -7 1 1606 423 0 0 0 chr4 133917022 133917069 -21713051 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1606 517 269 56 21 chr4 133917093 133917237 -21712883 - B1_Mur3 SINE Alu 0 149 1 1 1606 882 240 40 0 chr4 133917424 133917624 -21712496 - B3 SINE B2 -7 209 2 1 1606 498 271 27 40 chr4 133917654 133917804 -21712316 - B1F SINE Alu 0 149 2 1 1606 375 60 0 0 chr4 133917949 133917999 -21712121 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 1 1606 455 198 0 12 chr4 133919254 133919336 -21710784 + PB1D10 SINE Alu 11 91 -26 1 1606 1276 86 23 11 chr4 133919366 133919542 -21710578 + B2_Mm1a SINE B2 1 178 -15 1 1606 225 0 0 0 chr4 133919543 133919568 -21710552 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1606 931 211 43 33 chr4 133919576 133919787 -21710333 + ID_B1 SINE B4 3 215 -9 1 1606 249 280 42 21 chr4 133919817 133919912 -21710208 + MIRb SINE MIR 106 202 -66 1 1606 228 182 0 0 chr4 133919937 133919981 -21710139 + (CGTG)n Simple_repeat Simple_repeat 4 47 0 1 1606 499 178 106 41 chr4 133919998 133920121 -21709999 - ID_B1 SINE B4 -3 221 91 1 1606 230 200 36 0 chr4 133920288 133920343 -21709777 - MIR SINE MIR -113 149 93 1 1606 258 188 0 14 chr4 133921105 133921172 -21708948 + MIR SINE MIR 103 170 -98 1 1606 281 300 53 26 chr4 133922109 133922222 -21707898 - MIR SINE MIR -36 226 111 1 1606 377 269 76 92 chr4 133922566 133922750 -21707370 - ORSL DNA Tip100 0 275 95 1 1606 505 211 15 45 chr4 133922854 133922988 -21707132 + B1_Mur4 SINE Alu 2 131 -19 1 1606 366 74 0 0 chr4 133923005 133923059 -21707061 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1606 378 121 0 0 chr4 133923059 133923125 -21706995 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1606 605 254 146 0 chr4 133923210 133923369 -21706751 + B3 SINE B2 3 185 -31 1 1606 279 0 0 0 chr4 133923369 133923400 -21706720 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1606 728 137 126 30 chr4 133923414 133923549 -21706571 - B1_Mus1 SINE Alu 0 148 1 1 1606 550 312 39 28 chr4 133923607 133923785 -21706335 + B4A SINE B4 113 292 0 1 1606 451 219 66 63 chr4 133923858 133923873 -21706247 + ID_B1 SINE B4 78 98 -126 1 1606 275 276 22 115 chr4 133923873 133924012 -21706108 + B1_Mus1 SINE Alu 1 126 -22 1 1606 238 264 15 74 chr4 133924722 133924852 -21705268 + B1F2 SINE Alu 14 127 -21 1 1606 961 47 0 0 chr4 133924945 133925072 -21705048 + B1_Mm SINE Alu 21 147 0 1 1606 252 276 0 0 chr4 133925104 133925162 -21704958 + ID4_ SINE ID 15 72 -11 1 1606 498 17 0 0 chr4 133925162 133925221 -21704899 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1606 315 0 0 0 chr4 133926063 133926098 -21704022 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1606 541 279 105 51 chr4 133926136 133926486 -21703634 - RSINE1 SINE B4 -33 259 7 1 1606 442 284 26 72 chr4 133928606 133928758 -21701362 - ID_B1 SINE B4 0 224 80 1 1606 427 260 0 0 chr4 133928920 133928997 -21701123 - ID4_ SINE ID -5 78 2 1 1606 264 287 19 29 chr4 133929006 133929110 -21701010 - MIRb SINE MIR -121 147 45 1 1606 383 275 0 11 chr4 133929695 133929787 -21700333 - MIR SINE MIR -93 169 79 1 1606 460 248 168 0 chr4 133929824 133929949 -21700171 - B1_Mus2 SINE Alu 0 147 2 1 1606 749 233 106 25 chr4 133929968 133929982 -21700138 - B3 SINE B2 0 216 204 1 1606 483 82 0 0 chr4 133929982 133930055 -21700065 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1606 749 233 106 25 chr4 133930055 133930238 -21699882 - B3 SINE B2 -13 203 3 1 1606 297 339 0 25 chr4 133930513 133930631 -21699489 - PB1D10 SINE Alu 0 117 3 1 1606 705 288 22 0 chr4 133930631 133930710 -21699410 - ID SINE ID -141 83 1 1 1606 202 213 0 21 chr4 133930769 133930817 -21699303 - L2a LINE L2 -2 3424 3378 1 1606 324 210 0 0 chr4 133931090 133931152 -21698968 + RMER15 LTR ERVL 512 573 -2 1 1606 945 90 11 22 chr4 133931272 133931453 -21698667 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1606 263 340 39 0 chr4 133932056 133932159 -21697961 + MIR SINE MIR 79 185 -77 1 1606 981 245 182 15 chr4 133932339 133932362 -21697758 + MTD LTR MaLR 23 42 -377 1 1606 1262 165 32 0 chr4 133932362 133932580 -21697540 - URR1A DNA MER1_type -1 225 1 1 1606 981 245 182 15 chr4 133932580 133932681 -21697439 + MTD LTR MaLR 43 162 -257 1 1606 1206 48 0 20 chr4 133932681 133932830 -21697290 + B1_Mm SINE Alu 1 146 -1 1 1606 981 245 182 15 chr4 133932830 133933044 -21697076 + MTD LTR MaLR 163 419 0 1 1606 367 200 35 0 chr4 133933137 133933221 -21696899 - MTD LTR MaLR -14 405 260 1 1606 803 210 107 5 chr4 133933254 133933450 -21696670 + ID_B1 SINE B4 9 224 0 1 1606 223 222 0 69 chr4 133933562 133933620 -21696500 + PB1D9 SINE Alu 1 54 -66 1 1606 675 168 0 0 chr4 133933620 133933727 -21696393 + (CAGAGA)n Simple_repeat Simple_repeat 4 110 0 1 1606 570 68 0 54 chr4 133933727 133933820 -21696300 + B1_Mur3 SINE Alu 42 129 -20 1 1606 242 281 0 86 chr4 133933820 133933832 -21696288 + ID_B1 SINE B4 123 218 -6 1 1606 291 321 91 36 chr4 133935231 133935396 -21694724 + MER74A LTR ERVL 378 551 -7 1 1606 427 298 186 24 chr4 133935455 133935703 -21694417 - B4A SINE B4 -4 288 1 1 1606 318 231 53 32 chr4 133935777 133935864 -21694256 + PB1D10 SINE Alu 11 99 -18 1 1606 243 188 0 20 chr4 133935864 133935913 -21694207 - MTEa LTR MaLR 0 379 332 1 1606 288 0 0 0 chr4 133935947 133935979 -21694141 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1606 364 190 51 0 chr4 133936578 133936736 -21693384 + (CTCTG)n Simple_repeat Simple_repeat 3 168 0 1 1606 403 30 51 79 chr4 133936716 133936894 -21693226 + CT-rich Low_complexity Low_complexity 4 176 0 1 1606 440 196 51 0 chr4 133936894 133937453 -21692667 + (CTCTG)n Simple_repeat Simple_repeat 1 587 0 1 1606 247 18 50 92 chr4 133937455 133937575 -21692545 + CT-rich Low_complexity Low_complexity 4 118 0 1 1606 271 203 12 119 chr4 133937965 133937989 -21692131 + ORR1E LTR MaLR 1 24 -335 1 1606 2272 157 31 5 chr4 133937989 133938373 -21691747 - ORR1B1 LTR MaLR 0 394 1 1 1606 271 203 12 119 chr4 133938373 133938432 -21691688 + ORR1E LTR MaLR 25 74 -285 1 1606 934 243 74 5 chr4 133938433 133938636 -21691484 - ID_B1 SINE B4 -4 220 4 1 1606 224 243 0 13 chr4 133938989 133939064 -21691056 + GA-rich Low_complexity Low_complexity 4 77 0 1 1606 2003 65 7 8 chr4 133939537 133939837 -21690283 - ORR1A2 LTR MaLR 0 346 47 1 1606 2847 49 2 92 chr4 133939837 133940261 -21689859 + RLTR10 LTR ERVK 1 386 -4 1 1606 1935 125 6 15 chr4 133940261 133940293 -21689827 - ORR1A2 LTR MaLR -299 47 18 1 1606 7559 49 1 2 chr4 133940293 133941236 -21688884 + RLTR10-int LTR ERVK 57 998 -989 1 1606 350 281 39 15 chr4 133941300 133941430 -21688690 + RLTR10-int LTR ERVK 1462 1594 -5987 1 1606 8557 20 0 2 chr4 133941512 133942509 -21687611 + RLTR10-int LTR ERVK 990 1984 -3 1 1606 2847 49 2 92 chr4 133942511 133942935 -21687185 + RLTR10 LTR ERVK 1 386 -4 1 1606 362 103 0 0 chr4 133942936 133942994 -21687126 - ORR1A4 LTR MaLR -271 58 1 1 1606 497 247 133 33 chr4 133943060 133943240 -21686880 + 7SK RNA RNA 3 200 -131 1 1606 914 214 71 0 chr4 133943268 133943464 -21686656 + B3 SINE B2 7 216 0 1 1606 1283 27 0 7 chr4 133943469 133943618 -21686502 + B1_Mus1 SINE Alu 1 148 0 1 1606 226 67 22 22 chr4 133943621 133943667 -21686453 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1606 1305 64 30 46 chr4 133943681 133943878 -21686242 - B2_Mm2 SINE B2 0 195 2 1 1606 1294 56 51 0 chr4 133943892 133944070 -21686050 - B2_Mm2 SINE B2 -8 187 1 1 1606 522 236 130 14 chr4 133944414 133944580 -21685540 + B3A SINE B2 21 198 0 1 1606 207 0 0 0 chr4 133944580 133944603 -21685517 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1606 709 117 125 0 chr4 133944603 133944723 -21685397 - B1_Mus2 SINE Alu -11 136 2 1 1606 250 253 67 165 chr4 133944723 133944749 -21685371 + B2_Mm2 SINE B2 172 194 -1 1 1606 186 43 0 0 chr4 133944905 133944928 -21685192 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1606 1079 65 14 0 chr4 133944930 133945068 -21685052 - B1_Mus1 SINE Alu -6 142 3 1 1606 1304 79 17 0 chr4 133945122 133945299 -21684821 + B2_Mm2 SINE B2 2 181 -14 1 1606 335 113 0 0 chr4 133945348 133945410 -21684710 + B2_Mm1a SINE B2 127 188 -5 1 1606 358 134 176 13 chr4 133945457 133945570 -21684550 - B2_Mm2 SINE B2 -1 194 47 1 1606 248 297 64 92 chr4 133945567 133945600 -21684520 + RMER17C LTR ERVK 77 104 -306 1 1606 1286 80 6 6 chr4 133945600 133945776 -21684344 - B2_Mm2 SINE B2 -18 177 2 1 1606 248 297 64 92 chr4 133945776 133946024 -21684096 + RMER17C LTR ERVK 105 350 -60 1 1606 517 252 31 70 chr4 133946171 133946299 -21683821 - B1F SINE Alu -21 128 6 1 1606 641 305 137 4 chr4 133946636 133946906 -21683214 + MER90a LTR ERV1 70 375 -239 1 1606 581 122 178 0 chr4 133946915 133947022 -21683098 - RMER10B LTR ERVL -1 397 272 1 1606 2215 188 78 4 chr4 133947118 133947568 -21682552 + RLTR1 LTR ERV1 142 624 0 1 1606 1268 164 14 46 chr4 133947570 133947852 -21682268 - RMER10B LTR ERVL -125 273 1 1 1606 1237 102 11 16 chr4 133947872 133948062 -21682058 - B2_Mm1a SINE B2 -3 190 2 1 1606 1261 83 0 59 chr4 133948064 133948268 -21681852 - B2_Mm2 SINE B2 -3 192 1 1 1606 409 250 10 10 chr4 133948347 133948448 -21681672 - RSINE1 SINE B4 -64 101 1 1 1606 239 367 18 9 chr4 133948498 133948608 -21681512 + MER90a LTR ERV1 465 575 0 1 1606 323 189 0 63 chr4 133948713 133948792 -21681328 + RMER17C LTR ERVK 1 74 -336 1 1606 701 23 0 11 chr4 133948796 133948884 -21681236 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1606 315 0 0 0 chr4 133948884 133948918 -21681202 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1606 751 207 77 10 chr4 133948999 133949194 -21680926 + B3 SINE B2 4 211 -5 1 1606 728 159 7 0 chr4 133949448 133949586 -21680534 + CT-rich Low_complexity Low_complexity 2 140 0 1 1606 950 60 15 0 chr4 133949588 133949721 -21680399 - B1_Mus1 SINE Alu -1 147 13 1 1606 661 162 80 14 chr4 133950298 133950436 -21679684 + B1_Mus1 SINE Alu 2 148 0 1 1606 227 54 0 26 chr4 133950464 133950502 -21679618 + (CAAAC)n Simple_repeat Simple_repeat 5 41 0 1 1606 1331 78 0 45 chr4 133950573 133950775 -21679345 + B2_Mm2 SINE B2 1 193 -2 1 1606 258 136 0 0 chr4 133951105 133951149 -21678971 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1606 1309 85 21 5 chr4 133951328 133951518 -21678602 + B2_Mm2 SINE B2 1 193 -2 1 1606 193 328 0 16 chr4 133951655 133951717 -21678403 + L2c LINE L2 3277 3337 -50 1 1606 867 110 6 34 chr4 133952764 133952943 -21677177 + (TCC)n Simple_repeat Simple_repeat 2 175 0 1 1606 227 173 19 0 chr4 133952943 133952995 -21677125 + CT-rich Low_complexity Low_complexity 2 54 0 1 1606 749 194 29 0 chr4 133953815 133953954 -21676166 + RSINE1 SINE B4 4 146 -19 1 1606 1059 128 0 0 chr4 133953974 133954249 -21675871 + (TG)n Simple_repeat Simple_repeat 1 275 0 1 1606 832 112 8 0 chr4 133954354 133954479 -21675641 + B3 SINE B2 5 130 -86 1 1606 372 325 17 9 chr4 133954523 133954638 -21675482 + PB1D10 SINE Alu 1 116 -1 1 1606 463 338 0 31 chr4 133954839 133955001 -21675119 - RSINE1 SINE B4 0 165 9 1 1606 1220 34 0 0 chr4 133955122 133955269 -21674851 + B1_Mus1 SINE Alu 2 148 0 1 1606 291 279 13 0 chr4 133955352 133955431 -21674689 + ID4_ SINE ID 1 80 -3 1 1606 246 62 0 0 chr4 133955436 133955468 -21674652 + (CAAG)n Simple_repeat Simple_repeat 2 33 0 1 1607 305 320 78 8 chr4 133956285 133956414 -21673706 - MIR SINE MIR -35 227 90 1 1607 864 114 0 0 chr4 133956520 133956651 -21673469 + (GA)n Simple_repeat Simple_repeat 2 132 0 1 1607 541 244 23 0 chr4 133956653 133956784 -21673336 + B1_Mur2 SINE Alu 1 134 -15 1 1607 394 267 64 36 chr4 133956803 133956943 -21673177 + RSINE1 SINE B4 5 148 -17 1 1607 313 280 8 41 chr4 133957068 133957191 -21672929 + B4 SINE B4 173 291 -1 1 1607 186 43 0 0 chr4 133957485 133957508 -21672612 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 1 1607 663 13 0 0 chr4 133957751 133957827 -21672293 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1607 260 309 59 36 chr4 133958115 133958239 -21671881 + MIRb SINE MIR 92 226 -42 1 1607 210 301 11 21 chr4 133958364 133958459 -21671661 - B1_Mus1 SINE Alu -43 105 12 1 1607 533 268 97 7 chr4 133958376 133958530 -21671590 - ID_B1 SINE B4 -51 173 6 1 1607 273 119 0 0 chr4 133959464 133959506 -21670614 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1 1607 436 208 137 32 chr4 133959506 133959630 -21670490 - ID_B1 SINE B4 -2 222 86 1 1607 263 241 26 12 chr4 133960276 133960377 -21669743 + MIRb SINE MIR 20 121 -87 1 1607 320 253 13 0 chr4 133960523 133960598 -21669522 - ID4 SINE ID 0 83 8 1 1607 1571 270 81 9 chr4 133961167 133961593 -21668527 - RCHARR1 DNA MER1_type -1 973 514 1 1607 447 35 0 0 chr4 133961593 133961650 -21668470 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1607 1571 270 81 9 chr4 133961650 133961682 -21668438 - RCHARR1 DNA MER1_type -461 513 482 1 1607 691 257 41 0 chr4 133961735 133961906 -21668214 - B3A SINE B2 -18 180 3 1 1607 222 150 0 0 chr4 133961929 133961969 -21668151 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 1 1607 785 262 164 27 chr4 133961970 133962299 -21667821 - RCHARR1 DNA MER1_type -492 482 109 1 1607 1209 21 0 0 chr4 133962488 133962632 -21667488 - B1_Mus1 SINE Alu 0 148 5 1 1607 366 80 0 0 chr4 133962951 133963001 -21667119 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1607 593 234 20 47 chr4 133963001 133963149 -21666971 - B3A SINE B2 -34 164 21 1 1607 337 266 104 8 chr4 133963152 133963277 -21666843 + L2b LINE L2 3220 3356 -19 1 1607 248 264 0 0 chr4 133963658 133963711 -21666409 + (CGTG)n Simple_repeat Simple_repeat 1 53 0 1 1607 191 222 22 0 chr4 133964059 133964104 -21666016 - MIRc SINE MIR -60 208 163 1 1607 613 275 7 0 chr4 133964480 133964618 -21665502 + ID_B1 SINE B4 86 224 0 1 1607 234 341 156 21 chr4 133964699 133964840 -21665280 - MLT1J LTR MaLR -202 310 151 1 1607 345 335 42 72 chr4 133964869 133965062 -21665058 + MER33 DNA MER1_type 34 220 -104 1 1607 1101 68 0 0 chr4 133965147 133965295 -21664825 - B1_Mus1 SINE Alu 0 148 1 1 1607 245 226 55 24 chr4 133965188 133965315 -21664805 - ORR1B1-int LTR MaLR -756 753 623 1 1607 420 186 323 65 chr4 133965330 133965485 -21664635 - B3A SINE B2 -2 196 2 1 1607 260 261 125 0 chr4 133965505 133965593 -21664527 - PB1D10 SINE Alu -17 100 2 1 1607 729 263 12 120 chr4 133965637 133965879 -21664241 - ID_B1 SINE B4 0 224 9 1 1607 414 0 0 0 chr4 133965885 133965931 -21664189 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1607 1078 176 11 0 chr4 133965935 133966122 -21663998 - B3 SINE B2 -24 192 4 1 1607 412 277 38 75 chr4 133966232 133966392 -21663728 - RSINE1 SINE B4 -10 155 2 1 1607 333 147 14 29 chr4 133966426 133966496 -21663624 + B1F1 SINE Alu 70 138 -11 1 1607 672 275 51 37 chr4 133966491 133966575 -21663545 + B4A SINE B4 16 98 -194 1 1607 297 0 0 0 chr4 133966575 133966608 -21663512 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1607 672 275 51 37 chr4 133966608 133966738 -21663382 + B4A SINE B4 99 231 -61 1 1607 223 162 0 0 chr4 133966745 133966782 -21663338 + B1_Mur4 SINE Alu 6 42 -108 1 1607 661 142 8 8 chr4 133966961 133967089 -21663031 + CT-rich Low_complexity Low_complexity 2 129 0 1 1607 1438 58 10 5 chr4 133967089 133967281 -21662839 - B2_Mm2 SINE B2 -1 194 2 1 1607 334 159 130 0 chr4 133967308 133967377 -21662743 - ID4 SINE ID -4 79 2 1 1607 195 331 112 30 chr4 133967382 133967516 -21662604 - MIRb SINE MIR -80 188 44 1 1607 824 80 72 0 chr4 133968765 133968890 -21661230 - B1_Mus1 SINE Alu 0 148 15 1 1607 1049 44 22 0 chr4 133968890 133969025 -21661095 + B1_Mus2 SINE Alu 1 138 -9 1 1607 234 301 196 69 chr4 133969452 133969844 -21660276 - MLT1K LTR MaLR -110 485 44 1 1607 540 0 0 0 chr4 133970050 133970110 -21660010 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1607 504 0 0 0 chr4 133970110 133970165 -21659955 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1607 745 243 0 0 chr4 133970185 133970333 -21659787 - B1F SINE Alu -1 148 1 1 1607 385 276 112 0 chr4 133970363 133970479 -21659641 - ID_B1 SINE B4 0 224 96 1 1607 992 233 5 23 chr4 133970663 133970883 -21659237 + B3 SINE B2 1 216 0 1 1607 270 56 0 0 chr4 133970888 133970924 -21659196 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1607 645 105 0 0 chr4 133971332 133971427 -21658693 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 1607 284 265 132 0 chr4 133971527 133971654 -21658466 - MLT1J1 LTR MaLR -9 439 286 1 1607 204 261 0 0 chr4 133971831 133971877 -21658243 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1607 628 254 47 31 chr4 133971883 133971912 -21658208 - B3A SINE B2 -3 195 167 1 1607 231 36 0 0 chr4 133971912 133971940 -21658180 + (TATG)n Simple_repeat Simple_repeat 3 30 0 1 1607 628 254 47 31 chr4 133971940 133972101 -21658019 - B3A SINE B2 -32 166 2 1 1607 843 118 195 0 chr4 133972937 133973106 -21657014 - URR1B DNA MER1_type -23 202 1 1 1607 323 271 74 34 chr4 133973250 133973399 -21656721 + ID_B1 SINE B4 70 224 0 1 1607 593 165 59 15 chr4 133973265 133973400 -21656720 + B1_Mur1 SINE Alu 8 148 -1 1 1607 405 292 45 75 chr4 133973477 133973491 -21656629 - B2_Mm2 SINE B2 -1 194 181 1 1607 236 286 26 0 chr4 133973491 133973568 -21656552 - ID4 SINE ID 0 83 5 1 1607 638 221 30 24 chr4 133973568 133973753 -21656367 - B3 SINE B2 -15 180 1 1 1607 240 143 51 51 chr4 133973758 133973817 -21656303 - PB1D10 SINE Alu -13 104 46 1 1607 264 167 0 0 chr4 133974091 133974139 -21655981 + (TCCG)n Simple_repeat Simple_repeat 4 51 0 1 1607 278 229 96 32 chr4 133974334 133974443 -21655677 + PB1D10 SINE Alu 15 122 -27 1 1607 1087 63 7 0 chr4 133974443 133974586 -21655534 - B1_Mus1 SINE Alu -1 147 4 1 1607 235 304 51 88 chr4 133974586 133974616 -21655504 + B1F SINE Alu 123 149 0 1 1607 1227 96 17 0 chr4 133974620 133974798 -21655322 + B2_Mm2 SINE B2 1 181 -14 1 1607 428 99 0 24 chr4 133974844 133974927 -21655193 - L1Md_F2 LINE L1 -1 6581 6501 1 1607 231 239 61 137 chr4 133976303 133976351 -21653769 + MT2B2 LTR ERVL 121 158 -426 1 1607 415 277 9 0 chr4 133976351 133976463 -21653657 + PB1D10 SINE Alu 1 113 -4 1 1607 826 144 23 8 chr4 133976934 133977067 -21653053 + B1_Mur2 SINE Alu 5 139 -10 1 1607 626 143 0 35 chr4 133977164 133977280 -21652840 - B1_Mur4 SINE Alu -14 136 25 1 1607 344 332 53 21 chr4 133977190 133977378 -21652742 - B4 SINE B4 -90 202 9 1 1607 244 211 25 112 chr4 133977719 133977799 -21652321 + ID4_ SINE ID 2 74 -9 1 1607 212 175 0 0 chr4 133977799 133977839 -21652281 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 1 1607 225 236 139 0 chr4 133978623 133978695 -21651425 + MIRc SINE MIR 63 144 -124 1 1607 274 206 0 29 chr4 133978961 133979031 -21651089 + RSINE1 SINE B4 2 69 -96 1 1607 282 56 0 0 chr4 133979039 133979075 -21651045 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 1 1607 937 124 0 0 chr4 133979079 133979224 -21650896 - B1_Mur4 SINE Alu 0 150 6 1 1607 393 195 23 117 chr4 133979114 133979242 -21650878 - MT2B LTR ERVL -337 264 149 1 1607 381 131 0 0 chr4 133979515 133979576 -21650544 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1607 269 383 65 23 chr4 133979768 133979982 -21650138 - L3 LINE CR1 -439 4050 3828 1 1607 780 158 21 14 chr4 133980231 133980372 -21649748 + B1_Mur1 SINE Alu 3 144 -5 1 1607 473 136 43 36 chr4 133980785 133980900 -21649220 + B3 SINE B2 60 176 -19 1 1607 330 242 302 8 chr4 133981643 133981772 -21648348 - ID_B1 SINE B4 0 224 58 1 1607 206 337 76 0 chr4 133983030 133983122 -21646998 + MIR SINE MIR 49 147 -61 1 1607 234 0 0 0 chr4 133983663 133983689 -21646431 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1607 1104 63 0 0 chr4 133983703 133983838 -21646282 + B1_Mus2 SINE Alu 5 139 -8 1 1607 207 0 0 0 chr4 133983838 133983861 -21646259 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1607 850 168 7 0 chr4 133983884 133984027 -21646093 + B1_Mur4 SINE Alu 2 145 -5 1 1607 198 0 0 0 chr4 133984088 133984110 -21646010 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1607 606 201 71 14 chr4 133984111 133984252 -21645868 - B1_Mur4 SINE Alu 0 150 2 1 1607 213 220 17 17 chr4 133984449 133984509 -21645611 + ID4_ SINE ID 22 81 -2 1 1607 180 111 0 0 chr4 133984800 133984827 -21645293 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1607 772 226 52 10 chr4 133984831 133985023 -21645097 - B3 SINE B2 -13 203 4 1 1607 1827 140 9 21 chr4 133985081 133985410 -21644710 + Lx2B LINE L1 6674 6998 -2 1 1607 1145 62 7 0 chr4 133985417 133985563 -21644557 + B1_Mm SINE Alu 1 147 0 1 1607 359 309 18 0 chr4 133985661 133985771 -21644349 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1607 229 286 16 0 chr4 133985823 133985886 -21644234 - Lx8 LINE L1 -188 7285 7222 1 1607 210 352 52 58 chr4 133986868 133987040 -21643080 + MIR SINE MIR 40 210 -52 1 1607 180 0 0 0 chr4 133987067 133987087 -21643033 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 1607 451 358 39 22 chr4 133987133 133987364 -21642756 - MIRb SINE MIR -7 261 27 1 1607 685 286 31 76 chr4 133987405 133987658 -21642462 + B4A SINE B4 15 263 -29 1 1607 210 71 0 0 chr4 133987658 133987686 -21642434 + (CATA)n Simple_repeat Simple_repeat 1 28 0 1 1607 685 286 31 76 chr4 133987686 133987723 -21642397 + B4A SINE B4 264 292 0 1 1607 198 0 0 0 chr4 133987893 133987915 -21642205 + (TCCA)n Simple_repeat Simple_repeat 1 22 0 1 1607 459 0 0 0 chr4 133988466 133988517 -21641603 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1607 296 239 98 0 chr4 133988805 133988877 -21641243 + B1F1 SINE Alu 1 81 -68 1 1607 806 258 68 119 chr4 133988877 133989273 -21640847 + MTE2b LTR MaLR 1 376 -3 1 1607 296 239 98 0 chr4 133989273 133989292 -21640828 + B1F1 SINE Alu 82 100 -49 1 1607 268 264 178 31 chr4 133989292 133989322 -21640798 + ID_B1 SINE B4 163 223 -1 1 1607 652 273 29 24 chr4 133989645 133989855 -21640265 - B3 SINE B2 -1 215 5 1 1607 475 301 14 14 chr4 133989895 133990033 -21640087 - RSINE1 SINE B4 -26 139 2 1 1607 309 154 11 21 chr4 133990406 133990499 -21639621 + GA-rich Low_complexity Low_complexity 2 93 0 1 1607 703 162 7 7 chr4 133990546 133990689 -21639431 + CT-rich Low_complexity Low_complexity 4 146 0 1 1607 459 0 0 0 chr4 133990694 133990745 -21639375 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1607 450 278 35 0 chr4 133990745 133990860 -21639260 - B4 SINE B4 -73 219 101 1 1607 543 239 85 36 chr4 133990853 133991018 -21639102 + ORR1D2 LTR MaLR 196 368 -2 1 1607 396 0 0 0 chr4 133991215 133991259 -21638861 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1607 749 234 33 119 chr4 133991289 133991469 -21638651 - B4 SINE B4 -69 223 59 1 1607 186 43 0 0 chr4 133991469 133991492 -21638628 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1607 1004 89 0 0 chr4 133991492 133991627 -21638493 - B1_Mus1 SINE Alu -9 139 5 1 1607 749 234 33 119 chr4 133991627 133991688 -21638432 - B4 SINE B4 -234 58 3 1 1607 449 259 56 35 chr4 133991709 133991853 -21638267 - ID_B1 SINE B4 0 224 78 1 1607 183 42 0 0 chr4 133991884 133991908 -21638212 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1607 329 198 111 0 chr4 133991962 133992043 -21638077 + HAL1-3A_ME LINE L1 1977 2066 -792 1 1607 221 98 78 0 chr4 133992514 133992565 -21637555 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 1 1607 523 328 66 4 chr4 133992575 133992847 -21637273 + B4A SINE B4 3 291 -1 1 1607 475 274 31 97 chr4 133993242 133993527 -21636593 - ORR1E LTR MaLR -96 274 1 1 1607 809 184 14 0 chr4 133994262 133994403 -21635717 - B1_Mur4 SINE Alu -7 143 1 1 1607 1441 47 15 20 chr4 133994415 133994610 -21635510 - B2_Mm2 SINE B2 0 195 2 1 1607 471 345 0 45 chr4 133994665 133994844 -21635276 - B3A SINE B2 0 198 28 1 1607 521 165 152 38 chr4 133995804 133995936 -21634184 + B1_Mus2 SINE Alu 1 147 0 1 1607 235 319 26 115 chr4 133996104 133996233 -21633887 - MLT1A LTR MaLR -213 161 40 1 1607 333 0 0 0 chr4 133996233 133996270 -21633850 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1607 792 248 54 5 chr4 133996270 133996473 -21633647 - ID_B1 SINE B4 -11 213 1 1 1607 235 319 26 115 chr4 133996473 133996498 -21633622 - MLT1A LTR MaLR -335 39 21 1 1607 718 276 0 58 chr4 133996658 133996866 -21633254 + B3A SINE B2 1 196 -2 1 1607 354 244 0 32 chr4 133996895 133996988 -21633132 + PB1D10 SINE Alu 1 90 -27 1 1607 228 260 26 40 chr4 133996994 133997070 -21633050 + ID4_ SINE ID 3 77 -6 1 1607 292 200 35 59 chr4 133997517 133997602 -21632518 + ID2 SINE ID 1 83 0 1 1607 878 236 68 50 chr4 133997620 133997901 -21632219 + B4 SINE B4 1 286 -6 1 1607 222 150 0 0 chr4 133997919 133997959 -21632161 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1607 1101 149 218 13 chr4 133998871 133999096 -21631024 - ORR1C1 LTR MaLR -1 377 107 1 1607 4174 151 68 74 chr4 133999104 133999999 -21630121 + RMER19B LTR ERVK 1 890 -12 1 1607 442 158 63 0 chr4 134000008 134000103 -21630017 - ORR1C1 LTR MaLR -263 115 15 1 1607 460 184 23 0 chr4 134000105 134000192 -21629928 + PB1D7 SINE Alu 31 119 -1 2 1607 279 281 61 0 chr4 134000323 134000405 -21629715 + MIRb SINE MIR 17 103 -165 3 1607 908 105 21 7 chr4 134000437 134000581 -21629539 - B1_Mur4 SINE Alu 0 150 5 4 1607 426 20 0 0 chr4 134000600 134000651 -21629469 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 5 1607 569 263 7 13 chr4 134000651 134000805 -21629315 - RSINE1 SINE B4 -11 154 2 6 1607 1120 34 7 7 chr4 134001218 134001364 -21628756 + (TCTCC)n Simple_repeat Simple_repeat 3 148 0 7 1607 554 156 42 0 chr4 134001528 134001624 -21628496 + PB1D9 SINE Alu 21 120 0 8 1607 216 0 0 0 chr4 134001634 134001658 -21628462 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 9 1607 504 246 211 5 chr4 134001658 134001862 -21628258 + B4 SINE B4 10 255 -37 1 1607 752 244 23 6 chr4 134002750 134002927 -21627193 + ID_B1 SINE B4 36 215 -9 1 1607 1148 48 0 26 chr4 134003429 134003580 -21626540 + B1_Mm SINE Alu 1 147 0 1 1607 265 253 40 0 chr4 134003937 134004012 -21626108 + PB1D10 SINE Alu 2 79 -38 1 1607 1456 183 9 90 chr4 134004022 134004182 -21625938 + RMER17C LTR ERVK 2 145 -265 1 1607 429 20 0 0 chr4 134004182 134004232 -21625888 + (TCG)n Simple_repeat Simple_repeat 2 51 0 1 1607 1456 183 9 90 chr4 134004232 134004516 -21625604 + RMER17C LTR ERVK 146 410 0 1 1607 342 229 0 14 chr4 134005301 134005372 -21624748 + ID_B1 SINE B4 95 164 -60 1 1607 987 52 43 22 chr4 134005406 134005545 -21624575 + B1_Mm SINE Alu 1 142 -5 1 1607 25 0 0 0 chr4 134005752 134005777 -21624343 + GC_rich Low_complexity Low_complexity 1 25 0 1 1607 569 255 80 7 chr4 134007248 134007398 -21622722 - RSINE1 SINE B4 -2 163 3 1 1607 183 100 0 0 chr4 134007812 134007842 -21622278 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1607 363 272 9 19 chr4 134008060 134008165 -21621955 - RSINE1 SINE B4 -61 104 1 2 1607 391 340 88 15 chr4 134008207 134008470 -21621650 - L1ME4a LINE L1 -220 5904 5623 2 1607 260 318 65 0 chr4 134008583 134008690 -21621430 - PB1D10 SINE Alu -3 114 1 2 1607 231 36 0 0 chr4 134008829 134008857 -21621263 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1607 535 252 8 15 chr4 134009333 134009466 -21620654 + ID_B1 SINE B4 93 224 0 2 1607 22 0 0 0 chr4 134009696 134009718 -21620402 + GC_rich Low_complexity Low_complexity 1 22 0 2 1607 986 64 35 14 chr4 134010332 134010474 -21619646 + B1_Mus1 SINE Alu 4 148 0 2 1607 220 0 86 0 chr4 134010476 134010511 -21619609 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1607 237 83 0 0 chr4 134010560 134010596 -21619524 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1607 547 174 118 9 chr4 134010605 134010715 -21619405 - B1_Mus2 SINE Alu -21 126 5 3 1607 236 274 32 16 chr4 134011617 134011680 -21618440 - MIRb SINE MIR -181 87 24 3 1607 616 273 39 104 chr4 134011883 134012091 -21618029 - B4 SINE B4 -5 287 100 3 1607 865 129 0 75 chr4 134012091 134012250 -21617870 - B1_Mur3 SINE Alu -1 148 2 3 1607 616 273 39 104 chr4 134012250 134012348 -21617772 - B4 SINE B4 -193 99 1 3 1607 881 213 34 29 chr4 134012370 134012578 -21617542 - B3 SINE B2 0 216 8 3 1607 594 292 84 60 chr4 134012805 134013137 -21616983 + MLT1C LTR MaLR 68 407 -60 3 1607 725 244 48 5 chr4 134013712 134013918 -21616202 + ID_B1 SINE B4 1 215 -9 3 1607 207 222 19 0 chr4 134013921 134013975 -21616145 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1607 360 213 63 27 chr4 134013979 134014090 -21616030 + PB1D10 SINE Alu 2 116 -1 3 1607 398 250 39 46 chr4 134014260 134014390 -21615730 - B1F SINE Alu -12 137 9 3 1607 290 298 29 64 chr4 134014501 134014673 -21615447 + L1MD3 LINE L1 7714 7879 -116 4 1607 759 128 97 8 chr4 134015188 134015322 -21614798 + B1_Mur4 SINE Alu 5 150 0 4 1607 641 210 42 0 chr4 134015438 134015581 -21614539 - B1_Mur3 SINE Alu 0 149 1 4 1607 466 279 92 18 chr4 134015617 134015781 -21614339 - B3A SINE B2 -22 176 1 4 1607 897 217 5 36 chr4 134015800 134015996 -21614124 - B3 SINE B2 0 216 27 4 1607 2478 239 76 90 chr4 134016002 134016785 -21613335 - RMER1C Other Other -1 1341 573 4 1607 3684 123 78 29 chr4 134016785 134017505 -21612615 + RMER6A LTR ERVK 2 756 0 4 1607 2478 247 75 87 chr4 134017505 134017731 -21612389 - RMER1C Other Other -551 791 377 4 1607 492 18 0 0 chr4 134017804 134017861 -21612259 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1607 269 310 0 0 chr4 134017895 134017966 -21612154 - RMER1B Other Other -928 138 68 4 1607 304 364 82 16 chr4 134018209 134018452 -21611668 + L1MC LINE L1 5538 5796 -2086 4 1607 369 0 0 0 chr4 134018706 134018747 -21611373 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1607 359 152 30 0 chr4 134018747 134018813 -21611307 - B1_Mur2 SINE Alu -12 137 70 5 1607 513 0 0 0 chr4 134018830 134018887 -21611233 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 5 1607 862 154 0 20 chr4 134018887 134019025 -21611095 - B1_Mur4 SINE Alu -11 139 3 5 1607 547 278 35 0 chr4 134019104 134019219 -21610901 - RSINE1 SINE B4 -44 121 3 5 1607 725 251 31 0 chr4 134019245 134019440 -21610680 - B3 SINE B2 -11 205 5 5 1607 1842 128 73 9 chr4 134019490 134019806 -21610314 + ORR1B2 LTR MaLR 1 336 -31 5 1607 267 308 32 5 chr4 134019792 134019892 -21610228 - PB1D10 SINE Alu -41 108 6 5 1607 1087 68 0 26 chr4 134019966 134020118 -21610002 + B1_Mus1 SINE Alu 1 148 0 5 1607 182 62 31 0 chr4 134020121 134020153 -21609967 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1607 509 293 173 14 chr4 134020183 134020269 -21609851 + B4A SINE B4 1 89 -203 5 1607 207 0 0 0 chr4 134020269 134020292 -21609828 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1607 509 293 173 14 chr4 134020292 134020413 -21609707 + B4A SINE B4 90 241 -51 5 1607 330 26 0 0 chr4 134020448 134020487 -21609633 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1607 219 245 18 36 chr4 134020512 134020567 -21609553 + ID4_ SINE ID 30 83 0 6 1607 319 282 75 82 chr4 134020593 134020848 -21609272 - RLTR12B LTR ERVK -35 493 241 6 1607 397 268 188 60 chr4 134020896 134021146 -21608974 - RLTR12B LTR ERVK -230 298 17 6 1607 225 0 0 0 chr4 134021258 134021283 -21608837 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 6 1607 244 204 0 0 chr4 134025280 134025324 -21604796 + ID_B1 SINE B4 85 128 -96 6 1607 325 194 55 14 chr4 134025419 134025492 -21604628 + PB1D10 SINE Alu 37 112 -5 6 1607 538 279 64 25 chr4 134027263 134027465 -21602655 + B3 SINE B2 2 211 -5 6 1607 616 246 51 46 chr4 134027489 134027685 -21602435 + B3A SINE B2 1 197 -1 6 1607 354 273 11 11 chr4 134027897 134027986 -21602134 + ID_B1 SINE B4 104 192 -32 6 1607 231 222 226 36 chr4 134028021 134028105 -21602015 + ID_B1 SINE B4 125 224 0 7 1607 372 264 92 15 chr4 134028403 134028426 -21601694 + B1F SINE Alu 1 141 -8 7 1607 430 241 46 0 chr4 134028426 134028534 -21601586 + ID_B1 SINE B4 104 216 -8 7 1607 667 106 0 0 chr4 134031354 134031448 -21598672 - B1_Mus2 SINE Alu -9 138 45 7 1607 391 230 39 20 chr4 134031634 134031736 -21598384 + PB1D7 SINE Alu 8 111 -9 7 1607 677 134 156 8 chr4 134032142 134032270 -21597850 - B1_Mur4 SINE Alu 0 150 4 7 1607 588 282 28 24 chr4 134033227 134033438 -21596682 + ID_B1 SINE B4 2 213 -11 7 1607 317 291 111 51 chr4 134033912 134034129 -21595991 + MER102c DNA MER1_type 1 230 -101 7 1607 320 168 61 114 chr4 134034176 134034290 -21595830 + B4 SINE B4 185 292 0 7 1607 518 245 0 0 chr4 134035095 134035193 -21594927 + B1_Mur3 SINE Alu 1 98 -51 7 1607 252 292 103 6 chr4 134035727 134035885 -21594235 + MLT1J LTR MaLR 226 477 -133 8 1607 630 237 48 70 chr4 134035957 134036184 -21593936 + B4A SINE B4 14 235 -57 8 1607 486 214 20 0 chr4 134036183 134036281 -21593839 + PB1D9 SINE Alu 7 106 -14 8 1607 384 353 76 5 chr4 134036281 134036368 -21593752 + B4A SINE B4 92 289 -3 8 1607 939 144 193 6 chr4 134036368 134036549 -21593571 + B3 SINE B2 2 216 0 8 1607 286 242 16 0 chr4 134036726 134036788 -21593332 + ID4_ SINE ID 21 83 0 8 1607 212 370 28 0 chr4 134036730 134036838 -21593282 + B4 SINE B4 26 136 -156 8 1607 1080 74 0 39 chr4 134037505 134037659 -21592461 - B1_Mus1 SINE Alu 0 148 1 8 1607 327 332 34 52 chr4 134037695 134037879 -21592241 + B4A SINE B4 6 186 -38 8 1607 699 46 0 0 chr4 134037892 134037979 -21592141 + (GGA)n Simple_repeat Simple_repeat 3 89 0 8 1607 1371 62 0 0 chr4 134037979 134038157 -21591963 + (GAA)n Simple_repeat Simple_repeat 3 180 0 9 1607 367 323 102 0 chr4 134038726 134038853 -21591267 + MTEa LTR MaLR 32 171 -208 9 1607 668 229 36 169 chr4 134038874 134038974 -21591146 + MTEa LTR MaLR 136 203 -176 9 1607 249 57 0 0 chr4 134038974 134039009 -21591111 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1607 680 179 0 35 chr4 134039014 134039159 -21590961 - B1_Mur3 SINE Alu -5 144 5 9 1607 668 229 36 169 chr4 134039159 134039330 -21590790 + MTEa LTR MaLR 204 376 -3 9 1607 246 374 39 10 chr4 134039330 134039452 -21590668 + L2a LINE L2 3244 3421 -5 9 1607 373 174 20 0 chr4 134039598 134039696 -21590424 + CT-rich Low_complexity Low_complexity 1 100 0 9 1607 243 345 0 17 chr4 134040028 134040146 -21589974 - Lx8 LINE L1 -2 7471 7356 9 1607 477 309 328 32 chr4 134040272 134040519 -21589601 - Lx8 LINE L1 -360 7113 6794 9 1607 531 0 0 0 chr4 134040825 134040884 -21589236 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1607 294 167 0 129 chr4 134040893 134040955 -21589165 + B3A SINE B2 27 80 -118 9 1607 312 119 0 0 chr4 134041093 134041152 -21588968 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 9 1607 474 136 0 0 chr4 134042133 134042214 -21587906 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1607 1196 54 0 0 chr4 134042223 134042371 -21587749 - B1_Mus1 SINE Alu 0 148 1 1 1607 1094 116 189 0 chr4 134042375 134042565 -21587555 + URR1A DNA MER1_type 1 226 0 1 1607 237 308 38 98 chr4 134043088 134043221 -21586899 + Kanga1 DNA Tc2 1169 1293 -452 1 1607 458 252 29 99 chr4 134043415 134043685 -21586435 + ID_B1 SINE B4 13 272 -20 1 1607 997 150 60 11 chr4 134044461 134044643 -21585477 + B2_Mm2 SINE B2 1 191 -4 1 1607 238 268 71 24 chr4 134044644 134044728 -21585392 + LTR48 LTR ERV1 41 128 -659 1 1607 522 0 0 0 chr4 134044935 134044993 -21585127 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 1 1607 877 132 7 0 chr4 134044993 134045129 -21584991 - B1_Mur4 SINE Alu -11 139 3 1 1607 423 284 14 106 chr4 134045364 134045581 -21584539 + B3A SINE B2 1 197 -1 1 1607 598 222 0 0 chr4 134045593 134045701 -21584419 + B1_Mur3 SINE Alu 1 108 -41 1 1607 710 221 7 20 chr4 134045735 134045887 -21584233 + B3 SINE B2 5 154 -62 1 1607 282 269 176 0 chr4 134046062 134046181 -21583939 + L1MC LINE L1 5599 5738 -2144 1 1607 294 187 4 50 chr4 134046466 134046544 -21583576 - B1_Mur1 SINE Alu -1 148 44 1 1607 875 187 29 6 chr4 134046532 134046704 -21583416 - B3 SINE B2 -40 176 1 1 1607 2396 26 55 0 chr4 134046857 134047166 -21582954 - IAPEY2_LTR LTR ERVK 0 357 32 1 1607 231 248 214 19 chr4 134047423 134047526 -21582594 + MER45A DNA Tip100 40 162 -16 1 1607 469 291 0 23 chr4 134048824 134048954 -21581166 + RSINE1 SINE B4 3 129 -36 1 1607 339 169 0 0 chr4 134048963 134049034 -21581086 + CT-rich Low_complexity Low_complexity 1 71 0 1 1607 441 181 432 43 chr4 134049631 134049793 -21580327 + URR1B DNA MER1_type 1 225 0 1 1607 1141 41 14 0 chr4 134050037 134050182 -21579938 + B1_Mm SINE Alu 1 147 0 1 1607 186 71 0 0 chr4 134050182 134050210 -21579910 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1607 288 0 0 0 chr4 134051587 134051619 -21578501 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1607 641 185 0 37 chr4 134051620 134051755 -21578365 - B1_Mus1 SINE Alu -13 135 6 1 1607 443 160 0 136 chr4 134051784 134051899 -21578221 - PB1 SINE Alu -1 116 18 1 1607 210 71 0 0 chr4 134052975 134053003 -21577117 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 1 1607 513 0 0 0 chr4 134053530 134053587 -21576533 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1607 237 278 32 43 chr4 134054429 134054523 -21575597 - PB1 SINE Alu -2 125 33 1 1607 253 280 67 0 chr4 134054533 134054608 -21575512 - PB1D10 SINE Alu -8 109 30 1 1607 471 18 0 0 chr4 134054614 134054670 -21575450 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1607 559 195 0 79 chr4 134054698 134054833 -21575287 - B1_Mur4 SINE Alu 0 150 25 1 1607 282 254 0 45 chr4 134054878 134054944 -21575176 + B4 SINE B4 77 139 -153 1 1607 320 115 0 19 chr4 134054896 134054949 -21575171 + B1F2 SINE Alu 7 58 -91 1 1607 270 214 0 0 chr4 134054950 134055034 -21575086 + GA-rich Low_complexity Low_complexity 2 85 0 1 1607 284 273 0 13 chr4 134055037 134055115 -21575005 + PB1D10 SINE Alu 40 116 -1 1 1607 558 286 166 0 chr4 134055114 134055313 -21574807 + B4A SINE B4 11 242 -50 1 1607 1132 116 5 73 chr4 134055878 134056083 -21574037 + B2_Mm2 SINE B2 1 191 -4 1 1607 1175 61 0 0 chr4 134056085 134056233 -21573887 + B1_Mus1 SINE Alu 1 148 0 1 1607 207 327 57 9 chr4 134056325 134056430 -21573690 - MIR SINE MIR -133 129 20 1 1607 753 220 51 67 chr4 134056863 134057058 -21573062 - B3A SINE B2 -5 193 2 1 1607 537 205 110 8 chr4 134057387 134057505 -21572615 - ID_B1 SINE B4 -13 211 82 1 1607 525 85 76 7 chr4 134057726 134057820 -21572300 - B2_Mm2 SINE B2 -107 91 1 1 1607 256 117 433 0 chr4 134058422 134058482 -21571638 + B1_Mus2 SINE Alu 52 137 -10 1 1607 621 0 0 0 chr4 134058482 134058551 -21571569 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1607 1386 105 11 0 chr4 134058642 134058833 -21571287 + B2_Mm1t SINE B2 1 193 0 1 1607 2174 152 26 36 chr4 134059819 134060234 -21569886 - MTC LTR MaLR -10 411 1 1 1607 204 40 0 0 chr4 134060280 134060305 -21569815 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1607 1247 48 0 0 chr4 134060306 134060451 -21569669 - B1_Mus2 SINE Alu -2 145 1 1 1607 808 242 24 15 chr4 134060505 134060701 -21569419 - MTE2b LTR MaLR -5 374 176 1 1607 294 29 0 0 chr4 134060701 134060736 -21569384 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1607 1483 214 72 116 chr4 134060757 134060944 -21569176 - Lx7 LINE L1 -4 7692 7485 1 1607 194 0 0 37 chr4 134060944 134060971 -21569149 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1607 1483 214 72 116 chr4 134060971 134061016 -21569104 - Lx7 LINE L1 -212 7484 7428 1 1607 378 0 0 0 chr4 134061016 134061058 -21569062 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1607 1483 214 72 116 chr4 134061058 134061478 -21568642 - Lx7 LINE L1 -269 7427 7069 1 1607 1234 61 0 0 chr4 134061789 134061937 -21568183 + B1_Mus1 SINE Alu 1 148 0 1 1607 252 86 0 0 chr4 134061939 134061974 -21568146 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 1607 990 130 24 12 chr4 134062397 134062561 -21567559 - B2_Mm2 SINE B2 -27 168 3 1 1607 24 0 0 0 chr4 134062568 134062592 -21567528 + AT_rich Low_complexity Low_complexity 1 24 0 1 1607 3996 67 24 2 chr4 134064896 134065404 -21564716 - MURVY-LTR LTR ERV1 0 519 1 1 1607 333 68 0 0 chr4 134065424 134065468 -21564652 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1607 21 0 0 0 chr4 134065701 134065722 -21564398 + AT_rich Low_complexity Low_complexity 1 21 0 1 1607 577 222 0 0 chr4 134065758 134065866 -21564254 + B3A SINE B2 2 109 -89 1 1607 300 200 0 0 chr4 134065896 134065951 -21564169 - PB1D9 SINE Alu -43 77 23 1 1607 517 122 210 34 chr4 134066029 134066148 -21563972 - B1_Mur3 SINE Alu -1 148 9 1 1607 296 203 71 121 chr4 134066059 134066199 -21563921 - MT2B LTR ERVL -344 257 125 1 1607 757 241 39 22 chr4 134066355 134066533 -21563587 + B3A SINE B2 1 181 -17 1 1607 263 259 28 33 chr4 134066566 134066746 -21563374 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1607 670 164 47 54 chr4 134067772 134067920 -21562200 - B1_Mus2 SINE Alu 0 147 1 1 1607 498 214 71 9 chr4 134067962 134068075 -21562045 - PB1D9 SINE Alu 0 120 1 1 1607 1230 41 0 7 chr4 134068132 134068278 -21561842 + B1_Mm SINE Alu 1 145 -2 1 1607 291 28 0 0 chr4 134068278 134068314 -21561806 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1607 225 0 0 0 chr4 134068417 134068442 -21561678 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1607 857 228 21 26 chr4 134068516 134068710 -21561410 - B3A SINE B2 -1 197 5 1 1607 495 223 0 43 chr4 134068762 134068809 -21561311 - B3A SINE B2 -84 114 72 1 1607 3862 41 74 2 chr4 134068809 134069293 -21560827 - MURVY-LTR LTR ERV1 0 519 1 1 1607 495 223 0 43 chr4 134069293 134069362 -21560758 - B3A SINE B2 -127 71 3 1 1607 683 331 86 58 chr4 134069473 134069533 -21560587 - MLT1A LTR MaLR -5 369 312 1 1607 1506 53 21 5 chr4 134069533 134069723 -21560397 + B2_Mm2 SINE B2 1 193 -2 1 1607 683 331 86 58 chr4 134069723 134070021 -21560099 - MLT1A LTR MaLR -63 311 1 1 1607 341 186 92 11 chr4 134070130 134070217 -21559903 + B1F2 SINE Alu 36 129 -20 1 1607 310 253 13 0 chr4 134070243 134070318 -21559802 - B1F SINE Alu -23 126 51 1 1607 535 282 141 19 chr4 134070428 134070634 -21559486 + MER21B LTR ERV1 592 822 -41 1 1607 431 258 31 0 chr4 134070958 134071055 -21559065 + PB1D10 SINE Alu 1 100 -17 1 1607 350 191 60 0 chr4 134071199 134071283 -21558837 - Tigger7 DNA MER2_type -42 2449 2361 1 1607 680 212 72 14 chr4 134071304 134071443 -21558677 - B1_Mur2 SINE Alu -1 148 2 1 1607 379 200 35 11 chr4 134071468 134071576 -21558544 - B1_Mur2 SINE Alu 0 149 11 1 1607 275 208 256 83 chr4 134071587 134071755 -21558365 - B3A SINE B2 0 198 2 1 1607 1065 101 0 0 chr4 134071773 134071912 -21558208 + B1_Mus1 SINE Alu 1 139 -9 1 1607 761 284 29 0 chr4 134071932 134072136 -21557984 - ID_B1 SINE B4 -13 211 2 1 1607 1526 62 0 30 chr4 134072411 134072612 -21557508 - B2_Mm2 SINE B2 0 195 1 1 1607 258 278 42 0 chr4 134072675 134072747 -21557373 - ID_B1 SINE B4 -127 97 23 1 1607 288 232 0 0 chr4 134072693 134072749 -21557371 - ID4_ SINE ID -8 75 20 1 1607 1012 298 95 40 chr4 134074042 134074441 -21555679 + MER54A LTR ERVL 1 421 -480 1 1607 341 303 26 58 chr4 134074626 134074780 -21555340 - MLT1G1 LTR MaLR -285 294 146 1 1607 296 123 18 0 chr4 134074819 134074876 -21555244 + B1_Mus2 SINE Alu 89 146 -1 1 1607 1699 36 0 0 chr4 134074922 134075115 -21555005 + B2_Mm1a SINE B2 1 193 0 1 1607 820 165 202 11 chr4 134075293 134075471 -21554649 - B3 SINE B2 0 216 5 1 1607 631 248 0 0 chr4 134075503 134075624 -21554496 - B1_Mur1 SINE Alu -27 122 2 1 1607 328 281 0 0 chr4 134075734 134075816 -21554304 + ID_B1 SINE B4 94 175 -49 1 1607 547 222 49 49 chr4 134075805 134075947 -21554173 + B3 SINE B2 75 216 0 1 1607 229 299 54 65 chr4 134075976 134076144 -21553976 + L1_Rod LINE L1 5452 5617 -230 1 1607 521 237 63 29 chr4 134076352 134076526 -21553594 + L1_Rod LINE L1 5574 5753 -94 1 1607 660 251 173 5 chr4 134076526 134076773 -21553347 - MTE2b LTR MaLR -38 341 58 1 1607 337 278 237 2 chr4 134076778 134077022 -21553098 - L1_Mur3 LINE L1 -1678 4199 3898 2 1607 1115 38 30 0 chr4 134077995 134078128 -21551992 - B1_Mus2 SINE Alu -8 139 3 2 1607 398 198 94 52 chr4 134080167 134080263 -21549857 - PB1D9 SINE Alu -16 104 5 2 1607 769 206 149 21 chr4 134080306 134080494 -21549626 + B3 SINE B2 1 212 -4 2 1607 611 256 144 11 chr4 134081029 134081203 -21548917 - B3 SINE B2 -17 199 3 2 1607 646 122 118 30 chr4 134081249 134081384 -21548736 + URR1A DNA MER1_type 79 225 -1 2 1607 376 274 10 10 chr4 134083219 134083315 -21546805 + PB1D10 SINE Alu 1 96 -21 2 1607 1079 63 34 34 chr4 134083354 134083501 -21546619 + B1_Mus2 SINE Alu 1 147 0 2 1607 1635 47 0 20 chr4 134083722 134083919 -21546201 + B2_Mm1t SINE B2 1 193 0 2 1607 705 171 8 0 chr4 134084150 134084267 -21545853 + PB1D9 SINE Alu 2 119 -1 2 1607 21 57 0 0 chr4 134084312 134084347 -21545773 + AT_rich Low_complexity Low_complexity 1 35 0 2 1607 539 80 233 58 chr4 134084357 134084477 -21545643 + B1_Mur4 SINE Alu 9 149 -1 2 1607 628 234 90 17 chr4 134084500 134084674 -21545446 - B3A SINE B2 -12 183 6 2 1607 318 80 0 0 chr4 134085391 134085441 -21544679 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1607 773 144 43 7 chr4 134085589 134085729 -21544391 - B1_Mur4 SINE Alu 0 150 6 2 1607 431 248 91 42 chr4 134085924 134086067 -21544053 - RSINE1 SINE B4 -5 160 11 2 1608 861 195 92 0 chr4 134086874 134087048 -21543072 - B3 SINE B2 -26 190 1 2 1608 180 0 0 0 chr4 134088384 134088404 -21541716 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1608 22 0 0 0 chr4 134090841 134090863 -21539257 + GC_rich Low_complexity Low_complexity 1 22 0 2 1608 4404 36 2 0 chr4 134092370 134092872 -21537248 - RLTR1C LTR ERV1 0 503 1 2 1608 1334 87 5 37 chr4 134092976 134093137 -21536983 + B2_Mm2 SINE B2 1 161 -34 2 1608 486 0 0 0 chr4 134093137 134093191 -21536929 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 2 1608 1334 87 5 37 chr4 134093191 134093220 -21536900 + B2_Mm2 SINE B2 162 185 -10 2 1608 422 303 106 0 chr4 134093407 134093539 -21536581 - RSINE1 SINE B4 -17 148 3 2 1608 347 300 121 7 chr4 134094073 134094214 -21535906 + MIRb SINE MIR 31 187 -81 2 1608 673 154 103 44 chr4 134096978 134097114 -21533006 + B1F1 SINE Alu 1 144 -5 2 1608 279 0 0 0 chr4 134097276 134097307 -21532813 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1608 903 178 199 6 chr4 134097307 134097488 -21532632 - B3 SINE B2 0 216 1 2 1608 230 302 67 37 chr4 134097507 134097641 -21532479 + L2c LINE L2 3018 3155 -232 2 1608 285 284 101 0 chr4 134097963 134098072 -21532048 - MIRb SINE MIR -105 163 44 2 1608 378 0 0 0 chr4 134098427 134098469 -21531651 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1608 241 179 18 0 chr4 134099687 134099743 -21530377 - MIR SINE MIR -71 137 81 2 1608 194 418 0 0 chr4 134099990 134100081 -21530039 + L2a LINE L2 3075 3165 -261 2 1608 273 57 0 0 chr4 134100419 134100454 -21529666 + (CAG)n Simple_repeat Simple_repeat 2 36 0 2 1608 324 0 0 0 chr4 134100831 134100867 -21529253 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1608 180 294 29 0 chr4 134100950 134101018 -21529102 - MIRb SINE MIR -82 186 117 2 1608 533 15 15 0 chr4 134102183 134102249 -21527871 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1608 486 0 0 0 chr4 134102985 134103039 -21527081 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1608 296 318 111 10 chr4 134104135 134104281 -21525839 - MIRc SINE MIR -82 180 22 2 1608 348 242 14 268 chr4 134104855 134105064 -21525056 + RSINE1 SINE B4 2 157 -8 2 1608 816 119 119 0 chr4 134105088 134105222 -21524898 - B1_Mur4 SINE Alu 0 150 1 2 1608 317 250 246 17 chr4 134105270 134105388 -21524732 - B1F2 SINE Alu -2 147 3 2 1608 1150 82 0 0 chr4 134105512 134105658 -21524462 + B1_Mus1 SINE Alu 2 147 -1 2 1608 408 316 21 42 chr4 134105746 134105888 -21524232 + B1F SINE Alu 11 149 0 2 1608 755 232 113 5 chr4 134105891 134106077 -21524043 + B3 SINE B2 1 206 -10 2 1608 227 257 40 67 chr4 134106332 134106407 -21523713 + PB1D9 SINE Alu 40 112 -8 2 1608 252 228 88 0 chr4 134106410 134106467 -21523653 + ID4 SINE ID 6 67 -16 2 1608 797 283 47 18 chr4 134106472 134106749 -21523371 + B4 SINE B4 8 292 0 2 1608 194 116 23 0 chr4 134108080 134108123 -21521997 + (CGGGG)n Simple_repeat Simple_repeat 2 45 0 2 1608 222 62 0 0 chr4 134108234 134108266 -21521854 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 1608 373 255 0 29 chr4 134108266 134108371 -21521749 - B1F2 SINE Alu -7 142 41 2 1608 715 228 131 19 chr4 134108634 134108840 -21521280 + B4A SINE B4 64 292 0 2 1608 304 204 39 0 chr4 134108840 134108943 -21521177 + (CATA)n Simple_repeat Simple_repeat 1 107 0 2 1608 705 160 35 0 chr4 134108965 134109134 -21520986 + (CATA)n Simple_repeat Simple_repeat 4 178 0 2 1608 662 221 6 0 chr4 134109155 134109479 -21520641 + (CA)n Simple_repeat Simple_repeat 1 326 0 2 1608 1099 71 14 0 chr4 134110131 134110272 -21519848 - B1_Mus2 SINE Alu 0 147 5 2 1608 186 167 0 0 chr4 134110288 134110317 -21519803 + T-rich Low_complexity Low_complexity 20 48 0 2 1608 1600 37 11 11 chr4 134110317 134110508 -21519612 - B2_Mm1a SINE B2 -1 192 2 2 1608 186 167 0 0 chr4 134110508 134110526 -21519594 + T-rich Low_complexity Low_complexity 2 19 0 2 1608 389 256 88 192 chr4 134110540 134110801 -21519319 + B4A SINE B4 1 234 -58 2 1608 2127 128 12 12 chr4 134110914 134111239 -21518881 + ORR1A3 LTR MaLR 2 326 0 2 1608 945 113 0 0 chr4 134111831 134111999 -21518121 + (CA)n Simple_repeat Simple_repeat 1 168 0 2 1608 186 189 0 0 chr4 134112278 134112315 -21517805 - MIRm SINE MIR -17 259 223 2 1608 239 348 70 34 chr4 134112284 134112611 -21517509 - L2a LINE L2 -25 3350 2995 2 1608 1168 172 39 10 chr4 134112611 134112817 -21517303 + B3 SINE B2 1 212 -4 2 1608 239 342 34 59 chr4 134112817 134112971 -21517149 - L2a LINE L2 -422 2997 2853 2 1608 485 221 43 34 chr4 134112982 134113099 -21517021 - ID_B1 SINE B4 -14 210 93 2 1608 220 264 32 94 chr4 134113133 134113265 -21516855 - B1F2 SINE Alu -18 131 13 2 1608 300 306 113 14 chr4 134113267 134113479 -21516641 + L1MB8 LINE L1 5934 6166 -12 2 1608 477 0 0 0 chr4 134113494 134113547 -21516573 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1608 262 254 0 0 chr4 134113547 134113606 -21516514 - ID_B1 SINE B4 -21 203 145 2 1608 221 0 0 33 chr4 134113638 134113668 -21516452 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 2 1608 317 239 90 20 chr4 134114057 134114191 -21515929 - MIRb SINE MIR -106 170 29 2 1608 234 0 0 0 chr4 134114401 134114427 -21515693 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1608 238 227 45 0 chr4 134114481 134114493 -21515627 + MER3 DNA MER1_type 36 50 -159 2 1608 242 258 30 0 chr4 134114493 134114559 -21515561 - MER3 DNA MER1_type 0 209 142 2 1608 306 0 0 0 chr4 134114914 134114948 -21515172 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1608 396 0 0 0 chr4 134114948 134114991 -21515129 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1608 367 205 0 49 chr4 134115030 134115112 -21515008 - B4 SINE B4 -207 85 8 2 1608 266 296 0 0 chr4 134115375 134115446 -21514674 - ID4 SINE ID -9 74 4 2 1608 354 61 0 0 chr4 134115510 134115559 -21514561 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1608 22 0 0 0 chr4 134115645 134115667 -21514453 + AT_rich Low_complexity Low_complexity 1 22 0 2 1608 1189 42 28 0 chr4 134115669 134115813 -21514307 + B1_Mus1 SINE Alu 1 148 0 2 1608 303 0 115 0 chr4 134115828 134115880 -21514240 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 2 1608 625 302 10 25 chr4 134115887 134116084 -21514036 - B3A SINE B2 -1 197 4 2 1608 675 291 63 15 chr4 134116087 134116203 -21513917 - B4A SINE B4 -74 218 95 2 1608 213 121 0 0 chr4 134116203 134116236 -21513884 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1608 675 291 63 15 chr4 134116236 134116325 -21513795 - B4A SINE B4 -198 94 3 2 1608 707 237 33 45 chr4 134117114 134117325 -21512795 - B3A SINE B2 -2 214 8 2 1608 428 118 0 0 chr4 134117434 134117510 -21512610 + L1Md_F2 LINE L1 6507 6582 0 2 1608 382 297 154 29 chr4 134117533 134117845 -21512275 + L1ME4a LINE L1 5741 6091 -33 2 1608 291 323 121 8 chr4 134117998 134118136 -21511984 - MIR SINE MIR -78 190 32 2 1608 442 0 35 0 chr4 134119111 134119169 -21510951 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1608 405 0 0 0 chr4 134119781 134119826 -21510294 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1608 2097 119 59 79 chr4 134121154 134121358 -21508762 + ORR1C2 LTR MaLR 1 188 -196 2 1608 339 89 0 0 chr4 134121358 134121414 -21508706 + (TCTG)n Simple_repeat Simple_repeat 2 57 0 2 1608 2097 119 59 79 chr4 134121414 134121601 -21508519 + ORR1C2 LTR MaLR 189 384 0 2 1608 620 216 37 0 chr4 134122106 134122240 -21507880 + B1_Mur1 SINE Alu 1 139 -10 2 1608 1622 258 24 38 chr4 134122382 134122449 -21507671 + MTD LTR MaLR 3 60 -359 2 1608 1025 120 88 24 chr4 134122449 134122619 -21507501 - B2_Mm2 SINE B2 -14 181 1 2 1608 1622 258 24 38 chr4 134122619 134122974 -21507146 + MTD LTR MaLR 61 419 0 2 1608 475 157 67 0 chr4 134123093 134123182 -21506938 + B1_Mur3 SINE Alu 1 95 -54 2 1608 932 105 7 0 chr4 134123210 134123353 -21506767 + (TC)n Simple_repeat Simple_repeat 2 145 0 2 1608 247 305 95 0 chr4 134123374 134123469 -21506651 - MIRc SINE MIR -124 144 38 2 1608 210 374 80 16 chr4 134124033 134124158 -21505962 - MIR SINE MIR -98 164 32 2 1608 333 0 0 0 chr4 134124187 134124224 -21505896 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 2 1608 940 210 16 0 chr4 134125195 134125381 -21504739 + B3 SINE B2 3 191 -25 3 1608 1119 61 0 0 chr4 134125410 134125558 -21504562 + B2_Mm2 SINE B2 1 148 -47 3 1608 289 240 50 30 chr4 134126176 134126275 -21503845 + MIR SINE MIR 30 130 -132 3 1608 925 268 40 77 chr4 134127272 134127334 -21502786 - B4 SINE B4 -4 288 224 3 1608 186 0 88 0 chr4 134127334 134127368 -21502752 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1608 882 170 0 7 chr4 134127368 134127510 -21502610 - B1_Mus1 SINE Alu -7 141 1 3 1608 925 268 40 77 chr4 134127510 134127745 -21502375 - B4 SINE B4 -69 223 2 3 1608 193 310 81 35 chr4 134127856 134127943 -21502177 + MIRb SINE MIR 105 195 -73 3 1608 401 256 107 19 chr4 134128249 134128408 -21501712 - MER5B DNA MER1_type -4 174 2 3 1608 308 315 29 29 chr4 134128959 134129129 -21500991 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 3 1608 1827 95 15 4 chr4 134129291 134129567 -21500553 + ORR1A3 LTR MaLR 8 288 -58 3 1608 1300 27 0 0 chr4 134129567 134129714 -21500406 + B1_Mm SINE Alu 1 147 0 3 1608 1623 123 64 125 chr4 134129714 134129798 -21500322 + ORR1A3 LTR MaLR 289 346 0 3 1608 1266 129 6 13 chr4 134129857 134130175 -21499945 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 3 1608 420 71 0 0 chr4 134130176 134130232 -21499888 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 3 1608 322 342 151 34 chr4 134130257 134130548 -21499572 - L2b LINE L2 -2 3373 3049 3 1608 748 182 58 7 chr4 134130819 134130957 -21499163 + B1_Mur4 SINE Alu 1 145 -5 3 1608 1418 156 9 0 chr4 134130976 134131187 -21498933 - B3 SINE B2 -3 213 1 3 1608 188 298 70 0 chr4 134131632 134131689 -21498431 + MIRc SINE MIR 71 131 -137 3 1608 486 123 0 90 chr4 134132275 134132364 -21497756 - B1_Mur4 SINE Alu -51 96 16 3 1608 212 246 22 17 chr4 134132778 134132956 -21497164 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1608 238 227 30 8 chr4 134132986 134133119 -21497001 + (TG)n Simple_repeat Simple_repeat 2 137 0 3 1608 513 0 0 0 chr4 134133298 134133355 -21496765 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1608 428 230 90 0 chr4 134133534 134133634 -21496486 + PB1D10 SINE Alu 2 110 -7 3 1608 610 188 0 79 chr4 134133644 134133771 -21496349 + B1_Mus1 SINE Alu 1 117 -31 3 1608 681 231 199 0 chr4 134134618 134134804 -21495316 - ID_B1 SINE B4 0 224 2 3 1608 181 200 127 0 chr4 134134809 134134864 -21495256 - MIR SINE MIR -129 79 18 3 1608 279 349 90 8 chr4 134135410 134135543 -21494577 + MIRb SINE MIR 9 152 -116 3 1608 207 290 115 35 chr4 134137538 134137691 -21492429 + MIRc SINE MIR 41 197 -71 3 1608 697 174 15 33 chr4 134138158 134138303 -21491817 - B1_Mus2 SINE Alu -2 145 5 3 1608 269 284 53 124 chr4 134138303 134138326 -21491794 - B4 SINE B4 -68 223 68 3 1608 193 341 136 40 chr4 134138471 134138648 -21491472 + MIRc SINE MIR 61 254 -14 3 1608 352 336 50 7 chr4 134138685 134138826 -21491294 - MIRb SINE MIR -69 199 53 3 1608 364 321 28 0 chr4 134138990 134139096 -21491024 + MIRb SINE MIR 46 154 -114 3 1608 406 287 74 31 chr4 134141224 134141386 -21488734 + ORR1E LTR MaLR 26 194 -165 3 1608 743 242 0 30 chr4 134141919 134142085 -21488035 + RSINE1 SINE B4 5 165 0 3 1608 545 282 0 31 chr4 134142493 134142621 -21487499 - PB1 SINE Alu -2 125 2 3 1608 504 295 75 57 chr4 134142637 134142849 -21487271 + B4A SINE B4 1 216 -76 3 1608 795 21 0 0 chr4 134142899 134142992 -21487128 + (TC)n Simple_repeat Simple_repeat 1 93 0 3 1608 441 0 0 0 chr4 134142992 134143040 -21487080 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1608 442 292 23 0 chr4 134143295 134143425 -21486695 + MER2 DNA MER2_type 210 342 -3 3 1608 382 350 19 25 chr4 134144510 134144671 -21485449 + MIRc SINE MIR 84 243 -25 3 1608 1021 237 9 14 chr4 134144720 134144934 -21485186 - B3 SINE B2 -3 213 1 3 1608 738 62 0 0 chr4 134145396 134145492 -21484628 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 3 1608 1005 110 35 0 chr4 134145515 134145660 -21484460 - B1_Mur4 SINE Alu 0 150 1 3 1608 796 228 100 0 chr4 134146755 134146935 -21483185 + B3 SINE B2 15 212 -4 3 1608 500 232 44 9 chr4 134148202 134148315 -21481805 - PB1D10 SINE Alu 0 117 1 3 1608 202 244 44 0 chr4 134148431 134148476 -21481644 - MIRb SINE MIR -116 152 106 3 1608 189 0 0 0 chr4 134148936 134148957 -21481163 + (GGGA)n Simple_repeat Simple_repeat 3 23 0 3 1608 656 214 0 8 chr4 134149846 134149973 -21480147 + B1F SINE Alu 1 126 -23 3 1608 1711 306 75 57 chr4 134149974 134150539 -21479581 + Lx8 LINE L1 6267 6858 -615 3 1608 183 80 0 0 chr4 134150539 134150564 -21479556 + (CTTG)n Simple_repeat Simple_repeat 1 25 0 3 1608 468 51 0 0 chr4 134150565 134150624 -21479496 + (TTTA)n Simple_repeat Simple_repeat 1 59 0 3 1608 1711 306 75 57 chr4 134150624 134151008 -21479112 + Lx8 LINE L1 6859 7235 -238 3 1608 1085 258 71 65 chr4 134151011 134151363 -21478757 + ORR1D2 LTR MaLR 17 370 0 3 1608 309 286 0 54 chr4 134151364 134151475 -21478645 + Lx8 LINE L1 7261 7365 -108 3 1608 1714 26 0 0 chr4 134151542 134151735 -21478385 + B2_Mm1a SINE B2 1 193 0 3 1608 394 189 33 0 chr4 134151803 134151893 -21478227 + B4 SINE B4 91 183 -109 3 1608 493 350 121 21 chr4 134152270 134152550 -21477570 - MER2 DNA MER2_type -32 313 6 3 1608 351 0 0 0 chr4 134155046 134155085 -21475035 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1608 670 231 30 0 chr4 134155168 134155302 -21474818 + B1_Mur2 SINE Alu 2 139 -10 3 1608 333 0 0 0 chr4 134155305 134155342 -21474778 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1608 471 286 0 41 chr4 134155382 134155528 -21474592 + B4 SINE B4 134 273 -19 3 1608 576 330 182 36 chr4 134155915 134156415 -21473705 + MLT1G3 LTR MaLR 1 573 -22 3 1608 189 0 0 0 chr4 134156498 134156519 -21473601 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1608 246 318 36 103 chr4 134156519 134156572 -21473548 - B4A SINE B4 -63 229 133 3 1608 383 193 48 0 chr4 134156572 134156655 -21473465 - B1F1 SINE Alu -52 97 11 3 1608 246 318 36 103 chr4 134156655 134156684 -21473436 - B4A SINE B4 -63 132 76 3 1608 272 317 161 7 chr4 134157479 134157622 -21472498 - MIRb SINE MIR -24 244 80 3 1608 301 285 236 30 chr4 134157711 134157910 -21472210 - RMER15 LTR ERVL 0 575 336 3 1608 426 108 0 0 chr4 134158424 134158489 -21471631 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1608 218 324 14 29 chr4 134158929 134158999 -21471121 + MIRb SINE MIR 124 192 -76 3 1608 284 263 89 59 chr4 134159003 134159104 -21471016 - ID_B1 SINE B4 -165 127 24 3 1608 299 257 13 13 chr4 134159050 134159125 -21470995 - ID4_ SINE ID -6 77 3 3 1608 184 294 108 18 chr4 134159162 134159273 -21470847 - MIR SINE MIR -133 129 9 3 1608 342 169 52 10 chr4 134159833 134159923 -21470197 - PB1D9 SINE Alu -21 127 38 3 1608 194 246 62 43 chr4 134160945 134161050 -21469070 - L2a LINE L2 -248 3139 3030 3 1608 339 311 29 0 chr4 134161414 134161533 -21468587 + MLT1J1 LTR MaLR 69 192 -320 3 1608 207 333 26 26 chr4 134162098 134162175 -21467945 - L3b LINE CR1 -127 355 279 3 1608 392 252 57 32 chr4 134162820 134162943 -21467177 - MIRb SINE MIR -107 161 36 3 1608 1032 312 65 16 chr4 134163183 134163691 -21466429 + Lx9 LINE L1 6917 7449 -195 3 1608 306 0 0 0 chr4 134163695 134163729 -21466391 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1608 1135 84 0 0 chr4 134163997 134164140 -21465980 + B1_Mm SINE Alu 1 143 -4 3 1608 891 36 0 0 chr4 134164141 134164252 -21465868 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 1608 1205 151 66 5 chr4 134164360 134164573 -21465547 - URR1A DNA MER1_type 0 226 1 3 1608 820 254 145 4 chr4 134166238 134166487 -21463633 + B4 SINE B4 1 284 -8 3 1608 1194 187 59 0 chr4 134166980 134167183 -21462937 + B3 SINE B2 2 216 0 3 1608 479 330 94 24 chr4 134167529 134167827 -21462293 + HAL1 LINE L1 1367 1685 -822 3 1608 605 71 26 9 chr4 134167890 134168004 -21462116 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1608 688 261 65 72 chr4 134168104 134168465 -21461655 + ORR1E LTR MaLR 6 379 0 3 1608 284 289 116 0 chr4 134168470 134168591 -21461529 + L1M4 LINE L1 4102 4236 -1910 3 1608 363 299 111 46 chr4 134168669 134168767 -21461353 + L1M4 LINE L1 4348 4463 -1683 3 1608 757 180 71 7 chr4 134168767 134168907 -21461213 - B1F2 SINE Alu 0 149 1 3 1608 363 299 111 46 chr4 134168907 134169158 -21460962 + L1M4 LINE L1 4464 4720 -1426 3 1608 932 230 24 151 chr4 134169179 134169517 -21460603 - MTE2a LTR MaLR -84 295 1 3 1608 222 37 0 0 chr4 134169560 134169587 -21460533 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 3 1608 796 311 132 13 chr4 134169659 134169750 -21460370 + MLT1J LTR MaLR 81 181 -331 3 1608 366 23 0 0 chr4 134169750 134169793 -21460327 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1608 796 311 132 13 chr4 134169793 134170086 -21460034 + MLT1J LTR MaLR 182 510 -2 3 1608 740 164 53 0 chr4 134170690 134170842 -21459278 + URR1A DNA MER1_type 59 218 -8 3 1608 180 158 0 0 chr4 134171278 134171316 -21458804 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1608 417 231 148 14 chr4 134171375 134171509 -21458611 - ID_B1 SINE B4 -1 223 73 3 1608 243 61 0 0 chr4 134171509 134171542 -21458578 + (CACG)n Simple_repeat Simple_repeat 4 36 0 3 1608 609 299 180 4 chr4 134171556 134171801 -21458319 - B4A SINE B4 -4 288 1 3 1608 183 42 0 0 chr4 134172855 134172879 -21457241 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1608 285 29 0 0 chr4 134173091 134173125 -21456995 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1608 243 302 0 36 chr4 134173155 134173265 -21456855 + (TG)n Simple_repeat Simple_repeat 1 106 0 3 1608 857 281 48 26 chr4 134173309 134173362 -21456758 - B4A SINE B4 0 292 237 3 1608 648 264 18 42 chr4 134173362 134173528 -21456592 - RSINE1 SINE B4 0 165 4 3 1608 857 281 48 26 chr4 134173528 134173744 -21456376 - B4A SINE B4 -56 236 17 3 1608 620 307 149 21 chr4 134173834 134174265 -21455855 + MLT1H LTR MaLR 31 489 0 3 1608 221 216 0 65 chr4 134174691 134174753 -21455367 + MIR SINE MIR 207 268 0 4 1608 230 259 0 0 chr4 134174756 134174810 -21455310 + Charlie22a DNA MER1_type 150 203 -288 4 1608 188 362 30 50 chr4 134175550 134175649 -21454471 + L2b LINE L2 3247 3343 -32 4 1608 1663 29 5 0 chr4 134176458 134176667 -21453453 - MTA_Mm LTR MaLR 0 396 187 4 1608 2587 30 6 0 chr4 134176657 134176985 -21453135 - MT2C_Mm LTR ERVL -145 330 1 4 1608 362 275 84 11 chr4 134177503 134177678 -21452442 + MIR SINE MIR 49 245 -23 4 1608 418 331 70 66 chr4 134177740 134177999 -21452121 + B4 SINE B4 3 262 -30 4 1608 853 118 13 23 chr4 134178039 134178351 -21451769 + (CA)n Simple_repeat Simple_repeat 1 308 0 4 1608 320 261 11 11 chr4 134178372 134178461 -21451659 + HAL1-3A_ME LINE L1 1974 2062 -796 4 1608 1017 230 43 45 chr4 134178515 134178825 -21451295 - ORR1D2 LTR MaLR 0 370 40 4 1608 362 193 24 142 chr4 134178842 134178969 -21451151 + MT2B LTR ERVL 153 264 -337 4 1608 747 167 23 0 chr4 134178865 134178997 -21451123 + B1_Mur3 SINE Alu 10 144 -5 4 1608 1162 87 11 6 chr4 134179022 134179196 -21450924 + B2_Mm2 SINE B2 14 188 -7 4 1608 252 97 32 16 chr4 134179420 134179483 -21450637 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1608 288 0 0 0 chr4 134179483 134179515 -21450605 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1608 592 45 11 11 chr4 134179515 134179570 -21450550 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1608 342 0 0 0 chr4 134179570 134179608 -21450512 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1608 592 45 11 11 chr4 134179608 134179643 -21450477 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1608 303 28 0 0 chr4 134179813 134179849 -21450271 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1608 253 281 171 0 chr4 134180796 134180878 -21449242 - PB1 SINE Alu -7 120 25 4 1608 396 238 0 56 chr4 134180925 134181032 -21449088 - RSINE1 SINE B4 -61 104 4 4 1608 714 267 30 45 chr4 134181613 134181813 -21448307 + B3A SINE B2 2 198 0 4 1608 458 316 15 7 chr4 134181986 134182123 -21447997 + ID_B1 SINE B4 82 219 -5 4 1608 300 272 81 28 chr4 134182200 134182349 -21447771 - MIRb SINE MIR -106 156 7 4 1608 406 281 26 17 chr4 134183300 134183416 -21446704 - PB1D10 SINE Alu 0 117 1 4 1608 281 282 213 37 chr4 134183416 134183604 -21446516 - ORSL DNA Tip100 -51 224 4 4 1608 3346 143 34 20 chr4 134185030 134185586 -21444534 + RLTR12A LTR ERVK 1 564 -4 4 1608 520 212 76 41 chr4 134185629 134185826 -21444294 + L1MB8 LINE L1 5699 5902 -276 4 1608 395 254 119 7 chr4 134185842 134185985 -21444135 - MTEa LTR MaLR 0 379 221 4 1608 317 352 29 7 chr4 134186024 134186164 -21443956 - MTEa LTR MaLR -213 146 4 4 1608 311 281 14 35 chr4 134186212 134186356 -21443764 + L1MB8 LINE L1 5981 6121 -57 4 1608 942 72 0 0 chr4 134186460 134186585 -21443535 + B2_Mm2 SINE B2 2 126 -69 4 1608 228 352 106 17 chr4 134186647 134186826 -21443294 + L1ME3 LINE L1 5928 6122 -40 4 1608 355 264 233 11 chr4 134186924 134187100 -21443020 - RMER15 LTR ERVL -68 507 293 4 1608 303 299 19 64 chr4 134187113 134187270 -21442850 - RMER15 LTR ERVL -416 159 10 4 1608 21 0 0 0 chr4 134187288 134187309 -21442811 + AT_rich Low_complexity Low_complexity 1 21 0 4 1608 231 114 0 0 chr4 134187748 134187792 -21442328 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 4 1608 731 269 25 12 chr4 134188799 134188961 -21441159 + RSINE1 SINE B4 2 165 0 4 1608 912 226 165 24 chr4 134189060 134189314 -21440806 - B4 SINE B4 -1 291 2 4 1608 198 250 58 0 chr4 134190168 134190220 -21439900 - L2a LINE L2 -1 3425 3371 4 1608 474 327 65 42 chr4 134190282 134190496 -21439624 - MIRb SINE MIR -25 243 25 4 1608 369 335 42 6 chr4 134191632 134191800 -21438320 - MIR SINE MIR -86 176 3 4 1608 306 0 0 0 chr4 134191961 134191995 -21438125 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1608 346 326 94 0 chr4 134192115 134192253 -21437867 + RSINE1 SINE B4 9 159 -6 4 1608 307 218 70 22 chr4 134193138 134193252 -21436868 - MIRb SINE MIR -133 135 12 4 1608 342 279 54 0 chr4 134193715 134193826 -21436294 - MIRb SINE MIR -138 130 14 4 1608 351 244 37 0 chr4 134194428 134194510 -21435610 + PB1 SINE Alu 23 107 -20 4 1608 744 186 57 0 chr4 134194546 134194686 -21435434 - B1_Mur2 SINE Alu -1 148 1 4 1608 302 171 14 54 chr4 134194718 134194792 -21435328 + MTEa LTR MaLR 1 71 -308 4 1608 536 248 93 26 chr4 134194806 134194992 -21435128 + MTEa LTR MaLR 160 372 -7 4 1608 1017 70 0 0 chr4 134195030 134195172 -21434948 - B1_Mus1 SINE Alu -1 147 6 4 1608 198 368 170 7 chr4 134196719 134196872 -21433248 + L2b LINE L2 3165 3342 -33 4 1608 413 216 86 29 chr4 134197128 134197233 -21432887 - ID_B1 SINE B4 -3 221 111 4 1608 284 224 66 0 chr4 134198441 134198517 -21431603 + B1F SINE Alu 68 148 -1 4 1608 180 315 19 0 chr4 134198613 134198667 -21431453 + L2b LINE L2 3333 3387 0 4 1608 270 241 0 0 chr4 134198927 134198981 -21431139 - L3 LINE CR1 -111 4378 4325 4 1608 231 383 37 9 chr4 134199635 134199743 -21430377 - L3 LINE CR1 -1196 3293 3183 4 1608 257 218 92 0 chr4 134199755 134199842 -21430278 + L1MB7 LINE L1 5455 5549 -635 4 1608 650 233 275 9 chr4 134199880 134200177 -21429943 - MTD LTR MaLR -13 408 29 4 1608 979 305 150 24 chr4 134200254 134200754 -21429366 + MER68 LTR ERVL 1 563 0 4 1608 895 273 159 15 chr4 134200774 134201139 -21428981 + MTD LTR MaLR 1 379 0 4 1608 573 320 123 9 chr4 134201139 134201464 -21428656 + L1MB7 LINE L1 5672 6033 -151 4 1608 537 258 93 75 chr4 134201476 134201744 -21428376 - B4A SINE B4 -18 274 2 4 1608 227 276 0 0 chr4 134201750 134201808 -21428312 + L1MB7 LINE L1 6120 6177 -7 4 1608 308 324 95 23 chr4 134202092 134202313 -21427807 + L1MC4 LINE L1 7694 7930 -112 4 1608 284 247 10 51 chr4 134203071 134203169 -21426951 + MLT1A1 LTR MaLR 314 407 -1 4 1608 294 302 25 46 chr4 134203627 134203812 -21426308 + B4A SINE B4 1 233 -59 4 1608 692 250 28 6 chr4 134203815 134203992 -21426128 + B3A SINE B2 7 187 -11 4 1608 251 347 14 0 chr4 134204004 134204076 -21426044 + B4A SINE B4 212 284 -8 4 1608 197 108 27 0 chr4 134204090 134204127 -21425993 + (CATA)n Simple_repeat Simple_repeat 1 38 0 4 1608 316 241 12 12 chr4 134204179 134204259 -21425861 + PB1D7 SINE Alu 1 80 -40 4 1608 189 0 0 0 chr4 134204560 134204581 -21425539 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1608 1093 36 0 0 chr4 134204582 134204720 -21425400 - B1_Mus1 SINE Alu 0 148 11 4 1608 796 194 71 10 chr4 134204726 134204924 -21425196 - MTD LTR MaLR -209 210 1 4 1608 418 286 95 22 chr4 134205389 134205568 -21424552 - B4 SINE B4 -99 193 2 4 1608 991 146 0 0 chr4 134205987 134206124 -21423996 + B1_Mur4 SINE Alu 1 137 -13 4 1608 231 36 0 0 chr4 134206124 134206152 -21423968 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1608 465 188 17 4 chr4 134206195 134206295 -21423825 + MTD LTR MaLR 265 419 0 4 1608 468 316 136 16 chr4 134207013 134207264 -21422856 + B4 SINE B4 2 282 -10 4 1608 297 197 0 0 chr4 134207282 134207348 -21422772 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1608 26 0 0 0 chr4 134207674 134207700 -21422420 + AT_rich Low_complexity Low_complexity 1 26 0 4 1608 249 98 0 0 chr4 134207700 134207741 -21422379 + (TATG)n Simple_repeat Simple_repeat 2 42 0 4 1608 462 302 71 7 chr4 134207746 134207886 -21422234 - RSINE1 SINE B4 -14 151 3 4 1608 411 21 0 0 chr4 134207892 134207940 -21422180 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1608 314 284 0 166 chr4 134207940 134208079 -21422041 - B1F SINE Alu 0 148 32 4 1608 448 302 71 6 chr4 134208489 134208659 -21421461 + MIRb SINE MIR 71 251 -17 4 1608 212 304 130 0 chr4 134208913 134209074 -21421046 + L2b LINE L2 2945 3126 -249 4 1608 360 202 148 66 chr4 134209092 134209214 -21420906 - ID_B1 SINE B4 -12 212 81 4 1608 653 172 0 9 chr4 134210103 134210338 -21419782 + (CA)n Simple_repeat Simple_repeat 1 232 0 4 1608 574 340 122 47 chr4 134211104 134211559 -21418561 + MLT2B3 LTR ERVL 8 503 -51 4 1608 2571 88 128 39 chr4 134211559 134211754 -21418366 + RLTR11B LTR ERVK 1 241 -212 4 1608 690 47 0 0 chr4 134211754 134211840 -21418280 + (GGAGA)n Simple_repeat Simple_repeat 4 89 0 4 1608 2571 88 128 39 chr4 134211840 134212058 -21418062 + RLTR11B LTR ERVK 242 451 -2 4 1608 574 340 122 47 chr4 134212058 134212092 -21418028 + MLT2B3 LTR ERVL 504 533 -21 4 1608 224 310 99 10 chr4 134212123 134212224 -21417896 - PB1 SINE Alu -1 126 17 4 1608 401 209 162 17 chr4 134212323 134212440 -21417680 + MLT1D LTR MaLR 337 470 -35 4 1608 628 236 114 6 chr4 134212857 134213023 -21417097 - B4 SINE B4 0 292 109 4 1608 342 106 300 0 chr4 134213024 134213113 -21417007 - B1_Mur4 SINE Alu -36 114 1 4 1608 286 246 21 163 chr4 134213113 134213219 -21416901 - B4A SINE B4 -206 86 1 4 1608 258 281 44 11 chr4 134213418 134213508 -21416612 - MIRb SINE MIR -171 97 5 4 1608 795 292 146 0 chr4 134213808 134214061 -21416059 + B4A SINE B4 3 292 0 4 1608 243 125 0 0 chr4 134214085 134214125 -21415995 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1608 581 244 45 8 chr4 134214494 134214626 -21415494 + B1_Mur1 SINE Alu 5 141 -8 4 1608 3139 39 57 0 chr4 134214762 134215151 -21414969 + RLTR10A LTR ERVK 1 411 0 4 1608 454 262 85 26 chr4 134216890 134217043 -21413077 + RSINE1 SINE B4 4 165 0 4 1608 189 0 0 0 chr4 134217504 134217525 -21412595 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1609 298 341 0 0 chr4 134218380 134218462 -21411658 - ID4 SINE ID 0 83 2 4 1609 629 229 0 142 chr4 134218501 134218684 -21411436 - RSINE1 SINE B4 -6 159 3 4 1609 761 30 0 10 chr4 134219769 134219869 -21410251 + B1_Mus2 SINE Alu 47 145 -2 4 1609 916 273 10 62 chr4 134220339 134220628 -21409492 - B4A SINE B4 -18 274 1 4 1609 420 278 6 127 chr4 134220893 134221058 -21409062 + Charlie4z DNA MER1_type 8 152 -15 4 1609 186 118 0 0 chr4 134221194 134221228 -21408892 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 5 1609 817 249 72 5 chr4 134221252 134221474 -21408646 - B4 SINE B4 -55 237 1 5 1609 507 95 0 0 chr4 134221749 134221823 -21408297 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1609 296 185 97 12 chr4 134222428 134222508 -21407612 + MT2C_Mm LTR ERVL 1 85 -448 5 1609 684 186 98 51 chr4 134222579 134222787 -21407333 + MT2C_Mm LTR ERVL 94 419 -56 5 1609 1264 45 11 0 chr4 134222787 134222963 -21407157 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1609 684 184 106 51 chr4 134222963 134223014 -21407106 + MT2C_Mm LTR ERVL 420 473 -2 5 1609 806 126 82 0 chr4 134223197 134223332 -21406788 - B1_Mus2 SINE Alu 0 147 2 5 1609 321 303 30 0 chr4 134223333 134223432 -21406688 - MER63D DNA AcHobo -631 430 329 5 1609 483 196 19 9 chr4 134223652 134223760 -21406360 + Lx9 LINE L1 7348 7456 -188 5 1609 387 0 0 0 chr4 134223768 134223811 -21406309 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1609 1023 185 127 0 chr4 134223913 134224102 -21406018 - B3 SINE B2 -3 213 1 5 1609 27 0 0 0 chr4 134224103 134224130 -21405990 + AT_rich Low_complexity Low_complexity 1 27 0 5 1609 368 308 164 28 chr4 134226717 134226894 -21403226 + B4A SINE B4 25 225 -67 5 1609 834 261 64 0 chr4 134226986 134227189 -21402931 - B3 SINE B2 0 216 1 5 1609 222 234 75 2 chr4 134228607 134228667 -21401453 - MIRc SINE MIR -134 142 80 5 1609 636 165 0 0 chr4 134228852 134228967 -21401153 + CT-rich Low_complexity Low_complexity 3 117 0 5 1609 761 129 90 8 chr4 134228976 134229109 -21401011 - B1_Mur4 SINE Alu 0 150 7 5 1609 189 219 0 0 chr4 134229627 134229668 -21400452 - MIRm SINE MIR -10 266 226 5 1609 342 0 0 0 chr4 134229787 134229825 -21400295 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1609 3449 43 2 0 chr4 134230542 134230941 -21399179 - MTB LTR MaLR 0 400 1 5 1609 180 0 0 0 chr4 134231270 134231290 -21398830 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 5 1609 564 189 123 23 chr4 134232290 134232420 -21397700 + B1_Mur1 SINE Alu 2 144 -5 5 1609 184 130 43 0 chr4 134232444 134232490 -21397630 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1609 704 249 50 17 chr4 134232601 134232781 -21397339 + B4 SINE B4 96 281 -11 5 1609 212 350 129 8 chr4 134234390 134234514 -21395606 + MIRc SINE MIR 17 155 -113 5 1609 438 314 73 83 chr4 134234958 134235246 -21394874 + B4A SINE B4 6 290 -2 5 1609 218 271 14 14 chr4 134235252 134235323 -21394797 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1609 305 163 17 2 chr4 134236296 134236360 -21393760 + PB1D10 SINE Alu 57 120 0 5 1609 609 83 0 0 chr4 134236361 134236445 -21393675 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1609 5763 62 34 3 chr4 134236479 134237212 -21392908 + L1_Mus2 LINE L1 5811 6566 0 5 1609 876 119 0 0 chr4 134237317 134237443 -21392677 + B1_Mus1 SINE Alu 6 131 -17 5 1609 324 0 0 0 chr4 134237445 134237481 -21392639 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1609 687 251 26 20 chr4 134237814 134238009 -21392111 - B3A SINE B2 0 198 3 5 1609 409 282 52 22 chr4 134239486 134239620 -21390500 - RSINE1 SINE B4 -20 145 8 5 1609 206 425 0 14 chr4 134240438 134240586 -21389534 + MER5B DNA MER1_type 29 174 -4 5 1609 944 176 27 10 chr4 134240956 134241156 -21388964 - B3 SINE B2 0 216 2 5 1609 23 0 0 0 chr4 134241288 134241311 -21388809 + AT_rich Low_complexity Low_complexity 1 23 0 5 1609 324 0 0 0 chr4 134241328 134241364 -21388756 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1609 230 286 0 91 chr4 134241375 134241452 -21388668 - RSINE1 SINE B4 -93 72 3 5 1609 198 0 0 0 chr4 134241714 134241736 -21388384 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 5 1609 1585 176 71 73 chr4 134242229 134242640 -21387480 + MTD LTR MaLR 1 410 -9 5 1609 209 271 0 0 chr4 134242752 134242800 -21387320 + CT-rich Low_complexity Low_complexity 4 51 0 5 1609 248 0 31 0 chr4 134243087 134243119 -21387001 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 5 1609 234 339 44 68 chr4 134243185 134243435 -21386685 + Tigger15a DNA TcMar 180 423 -292 5 1609 735 99 18 0 chr4 134243538 134243649 -21386471 + B1_Mur3 SINE Alu 37 149 0 5 1609 425 263 35 17 chr4 134244002 134244118 -21386002 + PB1D9 SINE Alu 2 119 -1 5 1609 926 188 4 101 chr4 134244121 134244204 -21385916 + B3 SINE B2 1 76 -140 5 1609 3083 137 139 6 chr4 134244204 134244720 -21385400 - RMER4B LTR ERVK 0 585 1 5 1609 3312 21 42 0 chr4 134244724 134245104 -21385016 - MTA_Mm LTR MaLR 0 396 1 5 1609 926 188 4 101 chr4 134245104 134245252 -21384868 + B3 SINE B2 77 214 -2 5 1609 352 300 124 35 chr4 134245281 134245564 -21384556 + L1MEc LINE L1 1904 2211 -4407 5 1609 637 228 48 111 chr4 134245726 134245933 -21384187 + B3A SINE B2 5 198 0 5 1609 715 209 7 0 chr4 134245939 134246078 -21384042 + B1_Mur3 SINE Alu 9 148 -1 5 1609 381 280 58 8 chr4 134246138 134246370 -21383750 + L1MEc LINE L1 2438 2669 -3888 5 1609 450 171 29 109 chr4 134246371 134246509 -21383611 + MT2B LTR ERVL 152 278 -323 5 1609 996 59 0 22 chr4 134246390 134246528 -21383592 + B1_Mur4 SINE Alu 8 142 -8 5 1609 708 12 0 0 chr4 134246531 134246612 -21383508 + (GAAAA)n Simple_repeat Simple_repeat 1 81 0 5 1609 22 35 0 0 chr4 134246623 134246652 -21383468 + AT_rich Low_complexity Low_complexity 1 29 0 5 1609 1453 54 27 5 chr4 134246714 134246900 -21383220 + B2_Mm1t SINE B2 2 191 -2 5 1609 618 264 21 7 chr4 134246931 134247076 -21383044 + RSINE1 SINE B4 4 150 -15 5 1609 2189 122 66 20 chr4 134247169 134247564 -21382556 + MTC LTR MaLR 1 413 -8 5 1609 523 349 77 0 chr4 134247652 134247847 -21382273 + B4A SINE B4 17 226 -66 5 1609 607 186 73 0 chr4 134247852 134247976 -21382144 + B1_Mur1 SINE Alu 2 134 -15 5 1609 368 327 112 31 chr4 134248101 134248325 -21381795 + L1MEc LINE L1 3566 3807 -2730 5 1609 747 68 0 0 chr4 134248333 134248436 -21381684 + B2_Mm2 SINE B2 3 105 -90 5 1609 898 237 5 10 chr4 134248438 134248634 -21381486 - B3A SINE B2 -2 196 2 5 1609 446 232 0 0 chr4 134248740 134248822 -21381298 + ID4_ SINE ID 2 83 0 5 1609 225 0 0 0 chr4 134248827 134248852 -21381268 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1609 801 49 0 0 chr4 134248865 134248967 -21381153 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 5 1609 751 180 72 0 chr4 134249001 134249140 -21380980 + B1_Mur3 SINE Alu 1 149 0 5 1609 350 234 133 31 chr4 134249214 134249230 -21380890 + B1F SINE Alu 6 144 -3 5 1609 503 191 64 0 chr4 134249230 134249340 -21380780 + ID_B1 SINE B4 99 215 -9 5 1609 712 291 70 0 chr4 134249632 134249845 -21380275 + B4 SINE B4 65 292 0 5 1609 297 75 0 0 chr4 134249874 134249914 -21380206 + (GGGAGA)n Simple_repeat Simple_repeat 6 45 0 5 1609 340 325 17 17 chr4 134249914 134250033 -21380087 + L1M4 LINE L1 3953 4071 -2075 5 1609 2981 67 10 10 chr4 134250041 134250447 -21379673 + L1_Mus4 LINE L1 6231 6636 0 5 1609 1214 74 0 0 chr4 134250449 134250597 -21379523 + B1_Mus1 SINE Alu 1 148 0 5 1609 338 143 0 16 chr4 134250604 134250668 -21379452 + GA-rich Low_complexity Low_complexity 3 65 0 5 1609 778 127 31 112 chr4 134250679 134250839 -21379281 + B1_Mus1 SINE Alu 2 148 0 5 1609 545 280 46 62 chr4 134251286 134251480 -21378640 + B3A SINE B2 6 196 -2 5 1609 751 138 61 61 chr4 134251839 134251986 -21378134 + B1_Mus1 SINE Alu 2 148 0 5 1609 309 26 0 0 chr4 134252361 134252399 -21377721 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1609 291 243 100 0 chr4 134253896 134253966 -21376154 - B4 SINE B4 0 292 216 5 1609 1004 114 87 49 chr4 134253994 134254178 -21375942 + B2_Mm2 SINE B2 1 191 -4 5 1609 1317 52 67 17 chr4 134254183 134254361 -21375759 + B2_Mm2 SINE B2 1 187 -8 5 1609 435 220 26 68 chr4 134254397 134254514 -21375606 - RSINE1 SINE B4 -17 148 37 5 1609 1151 94 0 0 chr4 134254550 134254699 -21375421 - B1_Mur3 SINE Alu 0 149 1 5 1609 551 340 80 0 chr4 134254706 134254729 -21375391 - B4 SINE B4 -70 222 200 5 1609 997 128 0 0 chr4 134254729 134254877 -21375243 + B1_Mur4 SINE Alu 1 148 -2 5 1609 551 340 80 0 chr4 134254877 134255053 -21375067 - B4 SINE B4 -93 199 8 5 1609 39 38 0 0 chr4 134259559 134259612 -21370508 + GC_rich Low_complexity Low_complexity 1 53 0 5 1609 861 144 0 0 chr4 134261940 134262114 -21368006 + (TG)n Simple_repeat Simple_repeat 2 175 0 5 1609 696 151 0 0 chr4 134262130 134262276 -21367844 + (TG)n Simple_repeat Simple_repeat 2 147 0 5 1609 1393 68 17 0 chr4 134262322 134262498 -21367622 + B2_Mm2 SINE B2 2 180 -15 5 1609 708 45 0 0 chr4 134262498 134262586 -21367534 + (GAAAA)n Simple_repeat Simple_repeat 4 91 0 5 1609 396 0 0 0 chr4 134262989 134263033 -21367087 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 1609 541 196 26 9 chr4 134263033 134263136 -21366984 - PB1D9 SINE Alu -10 110 5 5 1609 273 309 12 0 chr4 134263258 134263339 -21366781 - MIR SINE MIR -49 213 132 5 1609 780 279 166 72 chr4 134263374 134263845 -21366275 - MLT2B2 LTR ERVL 0 515 1 5 1609 211 276 59 3 chr4 134264021 134264096 -21366024 - L2b LINE L2 -23 3403 3290 5 1609 300 294 0 0 chr4 134264155 134264223 -21365897 + PB1D7 SINE Alu 48 115 -5 5 1609 528 241 94 27 chr4 134264250 134264399 -21365721 + RSINE1 SINE B4 3 161 -4 5 1609 339 85 0 0 chr4 134264399 134264446 -21365674 + (ACTG)n Simple_repeat Simple_repeat 4 50 0 5 1609 408 170 93 65 chr4 134264694 134264801 -21365319 + B1_Mus2 SINE Alu 1 110 -37 5 1609 450 0 0 0 chr4 134264811 134264861 -21365259 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 5 1609 696 178 30 23 chr4 134264886 134265018 -21365102 - B1_Mus2 SINE Alu -10 137 5 5 1609 448 193 18 0 chr4 134265040 134265149 -21364971 + GA-rich Low_complexity Low_complexity 2 112 0 5 1609 382 229 0 35 chr4 134265277 134265363 -21364757 - ID2 SINE ID 0 83 1 6 1609 375 286 61 18 chr4 134265378 134265492 -21364628 - PB1 SINE Alu -8 119 1 6 1609 336 264 63 9 chr4 134266214 134266325 -21363795 + MIRb SINE MIR 27 143 -125 6 1609 347 0 23 0 chr4 134266366 134266409 -21363711 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1609 1411 63 17 0 chr4 134266409 134266583 -21363537 + B2_Mm2 SINE B2 5 181 -14 6 1609 543 177 15 8 chr4 134266593 134266724 -21363396 + GA-rich Low_complexity Low_complexity 3 134 0 6 1609 243 0 0 0 chr4 134266724 134266751 -21363369 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 6 1609 698 212 95 73 chr4 134266751 134267067 -21363053 - RMER10A LTR ERVL -5 437 115 6 1609 1406 65 21 5 chr4 134267172 134267359 -21362761 - B2_Mm2 SINE B2 -5 190 1 6 1609 1438 83 16 0 chr4 134267959 134268151 -21361969 - B2_Mm2 SINE B2 0 195 1 6 1609 778 276 19 79 chr4 134268153 134268189 -21361931 - B4A SINE B4 -40 252 229 6 1609 327 293 0 41 chr4 134268189 134268203 -21361917 - PB1D10 SINE Alu 0 117 105 6 1609 261 0 0 0 chr4 134268203 134268232 -21361888 + (GTTTG)n Simple_repeat Simple_repeat 5 33 0 6 1609 327 293 0 41 chr4 134268232 134268338 -21361782 - PB1D10 SINE Alu -13 104 2 6 1609 778 276 19 79 chr4 134268338 134268568 -21361552 - B4A SINE B4 -64 228 2 6 1609 202 372 21 0 chr4 134268792 134268886 -21361234 + MIR SINE MIR 49 144 -64 6 1609 213 241 78 58 chr4 134268962 134269066 -21361054 + MIRc SINE MIR 54 160 -108 6 1609 354 269 75 0 chr4 134269195 134269288 -21360832 + PB1D10 SINE Alu 11 110 -7 6 1609 4747 90 20 0 chr4 134269299 134269944 -21360176 + Lx3C LINE L1 6317 6974 -2 6 1609 295 366 47 63 chr4 134269981 134270299 -21359821 + MLT1I LTR MaLR 39 351 -60 6 1609 549 211 26 0 chr4 134270392 134270506 -21359614 + ID_B1 SINE B4 96 212 -12 6 1609 1684 21 0 20 chr4 134270511 134270707 -21359413 - B2_Mm1t SINE B2 0 193 2 6 1609 264 30 0 0 chr4 134270719 134270752 -21359368 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 1609 412 284 153 6 chr4 134270841 134271004 -21359116 - MTD LTR MaLR -12 407 221 6 1609 942 167 12 18 chr4 134271041 134271212 -21358908 - B3 SINE B2 0 216 47 6 1609 549 244 29 13 chr4 134271208 134271367 -21358753 - MTD LTR MaLR -214 205 6 6 1609 333 0 0 0 chr4 134271387 134271424 -21358696 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1609 270 289 47 104 chr4 134271561 134271754 -21358366 - RMER2 LTR ERV1 0 567 386 6 1609 206 217 0 21 chr4 134272240 134272287 -21357833 + GA-rich Low_complexity Low_complexity 3 48 0 6 1609 487 221 17 17 chr4 134272664 134272779 -21357341 + PB1D10 SINE Alu 3 117 0 6 1609 546 296 8 0 chr4 134272784 134272916 -21357204 + RSINE1 SINE B4 3 135 -30 6 1609 218 357 121 17 chr4 134272916 134272958 -21357162 + B3 SINE B2 2 193 -23 6 1609 348 366 75 0 chr4 134272982 134273168 -21356952 + MER2 DNA MER2_type 130 329 -16 6 1609 382 221 58 2 chr4 134273168 134273280 -21356840 - L1M2 LINE L1 -393 5781 5658 6 1609 201 209 0 0 chr4 134273637 134273704 -21356416 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1609 24 0 0 0 chr4 134273717 134273741 -21356379 + AT_rich Low_complexity Low_complexity 1 24 0 6 1609 263 295 0 178 chr4 134273861 134274125 -21355995 - L1ME4a LINE L1 -197 5927 5711 6 1609 506 169 45 0 chr4 134274334 134274423 -21355697 - RSINE1 SINE B4 -70 95 3 6 1609 330 252 152 95 chr4 134274563 134274721 -21355399 - B3A SINE B2 0 198 32 6 1609 468 0 0 0 chr4 134274721 134274773 -21355347 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1609 1130 62 21 0 chr4 134274795 134274940 -21355180 - B1_Mus1 SINE Alu 0 148 1 6 1609 1619 26 0 63 chr4 134274994 134275199 -21354921 - B2_Mm1a SINE B2 0 193 2 6 1609 272 224 149 84 chr4 134275266 134275373 -21354747 - B1F SINE Alu -1 116 3 6 1609 261 298 140 28 chr4 134275280 134275387 -21354733 - ID_B1 SINE B4 -33 191 73 6 1609 464 232 7 138 chr4 134275455 134275600 -21354520 - B1_Mur4 SINE Alu -22 128 3 6 1609 243 186 0 0 chr4 134275605 134275648 -21354472 - L1M2 LINE L1 -939 5204 5162 6 1609 556 239 113 22 chr4 134275788 134275993 -21354127 - L1M2 LINE L1 -1087 5056 4785 6 1609 283 344 63 6 chr4 134275999 134276157 -21353963 + HAL1 LINE L1 4 170 -2337 6 1609 463 241 26 8 chr4 134277420 134277537 -21352583 - RSINE1 SINE B4 -35 130 12 6 1609 243 170 0 0 chr4 134277552 134277599 -21352521 + CT-rich Low_complexity Low_complexity 2 48 0 6 1609 1004 121 51 11 chr4 134277633 134277809 -21352311 + B2_Mm2 SINE B2 10 192 -3 6 1609 691 251 74 0 chr4 134277805 134277980 -21352140 + B3 SINE B2 27 214 -2 6 1609 1245 28 7 0 chr4 134277984 134278129 -21351991 + B1_Mus2 SINE Alu 2 147 0 6 1609 613 148 43 9 chr4 134278196 134278312 -21351808 - RSINE1 SINE B4 -41 124 5 6 1609 288 111 0 0 chr4 134278318 134278363 -21351757 + (TCC)n Simple_repeat Simple_repeat 2 46 0 6 1609 550 299 30 6 chr4 134278388 134278553 -21351567 - B3A SINE B2 -2 196 28 6 1609 247 234 69 0 chr4 134278778 134278883 -21351237 + L2c LINE L2 3020 3139 -248 6 1609 267 249 10 88 chr4 134278884 134278990 -21351130 - MIR SINE MIR -35 173 64 6 1609 1330 239 21 0 chr4 134278990 134279279 -21350841 + MTE2b LTR MaLR 85 379 0 6 1609 220 325 0 46 chr4 134279442 134279529 -21350591 - ID2 SINE ID 0 83 1 6 1609 945 124 16 29 chr4 134279529 134279729 -21350391 - B3 SINE B2 -2 193 1 6 1609 367 256 0 0 chr4 134279736 134279818 -21350302 - ID4_ SINE ID -1 82 1 6 1609 401 262 19 9 chr4 134279827 134279935 -21350185 - PB1D10 SINE Alu -8 109 1 6 1609 256 362 127 25 chr4 134280143 134280418 -21349702 + MER113 DNA MER1_type 48 350 -171 6 1609 459 138 0 48 chr4 134280512 134280596 -21349524 - B1_Mus2 SINE Alu -55 92 13 6 1609 225 228 35 0 chr4 134280759 134280816 -21349304 + PB1D10 SINE Alu 25 83 -34 6 1609 256 295 16 0 chr4 134281446 134281507 -21348613 - MLT2B1 LTR ERVL -79 488 427 6 1609 354 377 53 33 chr4 134281716 134281960 -21348160 - LTR16A LTR ERVL -37 414 166 6 1609 394 259 0 0 chr4 134282213 134282294 -21347826 + ID4 SINE ID 2 82 -1 6 1609 523 113 10 20 chr4 134282294 134282393 -21347727 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 6 1609 307 264 18 9 chr4 134282394 134282505 -21347615 + GA-rich Low_complexity Low_complexity 1 112 0 6 1609 1092 112 12 0 chr4 134282545 134282714 -21347406 + B2_Mm2 SINE B2 1 171 -24 6 1609 284 89 31 42 chr4 134282734 134282830 -21347290 + B2_Mm2 SINE B2 47 193 -2 6 1609 371 310 13 88 chr4 134282827 134282986 -21347134 + B4 SINE B4 27 173 -119 6 1609 195 42 0 0 chr4 134283053 134283077 -21347043 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1609 288 0 0 0 chr4 134283080 134283112 -21347008 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 1609 445 229 29 58 chr4 134283128 134283267 -21346853 + B1F SINE Alu 10 144 -5 6 1609 333 264 0 0 chr4 134284065 134284186 -21345934 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 1609 456 224 6 12 chr4 134284223 134284395 -21345725 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1609 2183 175 8 5 chr4 134284729 134285119 -21345001 - MTC LTR MaLR -30 391 1 6 1609 295 297 0 0 chr4 134285409 134285483 -21344637 + MIRb SINE MIR 52 125 -143 6 1609 261 0 0 0 chr4 134285598 134285627 -21344493 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1609 1194 249 110 42 chr4 134286030 134286412 -21343708 + RMER20B LTR ERVK 1 408 -219 6 1609 314 262 29 19 chr4 134286430 134286535 -21343585 + RMER20B LTR ERVK 496 601 -26 6 1609 2174 158 74 8 chr4 134286536 134287005 -21343115 - RMER4B LTR ERVK -38 547 17 6 1609 556 211 212 45 chr4 134287071 134287101 -21343019 + B3 SINE B2 8 35 -181 6 1609 1215 68 0 0 chr4 134287101 134287248 -21342872 - B1_Mus2 SINE Alu 0 147 1 6 1609 556 211 212 45 chr4 134287248 134287396 -21342724 + B3 SINE B2 36 216 0 6 1609 488 282 197 19 chr4 134288033 134288301 -21341819 + L1MCa LINE L1 1201 1508 -5000 6 1609 871 94 46 23 chr4 134288301 134288432 -21341688 + B1_Mus1 SINE Alu 5 138 -10 6 1609 488 282 197 19 chr4 134288432 134288539 -21341581 + L1MCa LINE L1 1509 1643 -4865 6 1609 334 342 65 45 chr4 134288566 134288811 -21341309 + B4 SINE B4 41 290 -2 6 1609 359 267 66 7 chr4 134288852 134288988 -21341132 + L1MCa LINE L1 1633 1776 -4732 6 1609 908 231 117 52 chr4 134288988 134289465 -21340655 + RMER4B LTR ERVK 1 585 0 6 1609 667 225 53 97 chr4 134289566 134289773 -21340347 + B3A SINE B2 1 198 0 6 1609 181 279 0 0 chr4 134289894 134289937 -21340183 - MIR SINE MIR -58 150 108 6 1609 1204 61 0 0 chr4 134291068 134291216 -21338904 - B1_Mus1 SINE Alu 0 148 1 6 1609 422 53 74 0 chr4 134292004 134292099 -21338021 + (GA)n Simple_repeat Simple_repeat 2 103 0 6 1609 243 128 62 21 chr4 134293097 134293145 -21336975 - Lx6 LINE L1 -1015 6445 6396 6 1609 180 0 0 0 chr4 134293888 134293908 -21336212 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1609 219 324 176 0 chr4 134294399 134294535 -21335585 + MIRb SINE MIR 76 235 -33 6 1609 200 280 206 0 chr4 134294566 134294675 -21335445 - MIRm SINE MIR -94 168 39 6 1609 256 234 19 96 chr4 134294957 134295061 -21335059 + MT2B LTR ERVL 155 250 -351 6 1609 406 207 60 42 chr4 134294976 134295101 -21335019 + PB1D9 SINE Alu 12 131 -16 6 1609 983 119 35 0 chr4 134295263 134295406 -21334714 + B1_Mus1 SINE Alu 1 148 0 6 1609 282 87 0 0 chr4 134295406 134295452 -21334668 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1609 210 355 40 24 chr4 134295842 134295966 -21334154 + L2a LINE L2 3295 3420 -6 6 1609 1344 78 39 0 chr4 134296415 134296595 -21333525 - B2_Mm2 SINE B2 -8 187 1 6 1609 194 0 39 0 chr4 134297444 134297470 -21332650 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1609 234 383 27 34 chr4 134298637 134298783 -21331337 + MIRb SINE MIR 14 158 -110 6 1609 1640 284 190 23 chr4 134298786 134299525 -21330595 + Lx8 LINE L1 6285 7147 -326 7 1609 207 311 32 8 chr4 134300752 134300844 -21329276 - MIRc SINE MIR -87 189 92 7 1609 244 200 182 21 chr4 134302028 134302161 -21327959 + MIRc SINE MIR 1 171 -97 7 1609 395 195 292 0 chr4 134304396 134304509 -21325611 + B1_Mm SINE Alu 2 147 0 7 1609 252 77 0 0 chr4 134304530 134304569 -21325551 + (CAGGC)n Simple_repeat Simple_repeat 2 40 0 7 1609 318 336 35 28 chr4 134306135 134306279 -21323841 - MIRb SINE MIR -118 150 6 7 1609 195 321 60 0 chr4 134309441 134309525 -21320595 - MIR3 SINE MIR -36 172 84 7 1609 783 183 297 39 chr4 134309690 134309853 -21320267 + ORR1C2 LTR MaLR 5 231 -153 7 1609 186 0 88 0 chr4 134309853 134309887 -21320233 + (CCTG)n Simple_repeat Simple_repeat 4 40 0 7 1609 783 159 335 31 chr4 134309887 134309994 -21320126 + ORR1C2 LTR MaLR 232 383 -1 7 1609 1303 134 35 61 chr4 134311707 134311938 -21318182 - URR1B DNA MER1_type 0 225 1 7 1609 1273 202 20 43 chr4 134313455 134313783 -21316337 + MTD LTR MaLR 2 313 -87 7 1609 1154 69 7 0 chr4 134313783 134313928 -21316192 + B1_Mm SINE Alu 2 147 0 7 1609 735 286 46 98 chr4 134313928 134313967 -21316153 + MTD LTR MaLR 314 350 -50 7 1609 1322 90 26 11 chr4 134313971 134314161 -21315959 - B2_Mm1t SINE B2 0 193 1 7 1609 284 281 101 0 chr4 134317004 134317093 -21313027 - MIR3 SINE MIR -37 171 74 7 1609 626 154 25 41 chr4 134317349 134317471 -21312649 + B1_Mur4 SINE Alu 19 138 -12 7 1609 290 175 123 0 chr4 134317533 134317590 -21312530 + MIRc SINE MIR 90 153 -115 7 1609 933 216 39 0 chr4 134317599 134317807 -21312313 + ID_B1 SINE B4 9 224 0 7 1609 213 94 0 0 chr4 134317852 134317884 -21312236 + (ATG)n Simple_repeat Simple_repeat 3 34 0 7 1609 408 293 11 14 chr4 134317911 134318045 -21312075 + B3A SINE B2 85 216 0 7 1609 435 166 37 82 chr4 134318067 134318184 -21311936 + B1_Mur1 SINE Alu 5 149 0 7 1609 456 213 18 53 chr4 134319112 134319226 -21310894 + PB1D9 SINE Alu 1 110 -10 7 1609 1158 65 0 0 chr4 134319306 134319444 -21310676 + B1_Mus1 SINE Alu 1 138 -10 7 1609 642 60 0 0 chr4 134319444 134319527 -21310593 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 7 1609 214 338 143 0 chr4 134319615 134319748 -21310372 + MIRb SINE MIR 100 251 -17 7 1609 570 167 21 77 chr4 134320682 134320825 -21309295 - B1_Mur3 SINE Alu -1 148 14 7 1609 826 163 0 0 chr4 134321048 134321183 -21308937 + B1_Mus2 SINE Alu 5 139 -8 7 1609 261 0 0 0 chr4 134321330 134321359 -21308761 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1609 424 275 46 0 chr4 134321392 134321501 -21308619 - RSINE1 SINE B4 -29 136 23 7 1609 395 284 117 7 chr4 134322097 134322249 -21307871 + ID_B1 SINE B4 47 215 -9 7 1609 459 277 5 114 chr4 134322285 134322505 -21307615 - ID_B1 SINE B4 -28 196 1 7 1609 192 265 43 14 chr4 134322505 134322574 -21307546 - MIRc SINE MIR -105 163 93 7 1609 26 0 0 0 chr4 134323637 134323663 -21306457 + GC_rich Low_complexity Low_complexity 1 26 0 7 1609 209 250 0 0 chr4 134323818 134323862 -21306258 + (CCG)n Simple_repeat Simple_repeat 2 45 0 7 1609 563 228 68 20 chr4 134324235 134324383 -21305737 + RSINE1 SINE B4 11 165 0 7 1609 21 36 0 0 chr4 134324383 134324411 -21305709 + AT_rich Low_complexity Low_complexity 1 28 0 7 1609 530 275 0 0 chr4 134324763 134324883 -21305237 + PB1D7 SINE Alu 1 120 0 7 1609 198 329 55 16 chr4 134325365 134325490 -21304630 + L2b LINE L2 3097 3231 -156 7 1609 276 100 0 0 chr4 134325735 134325775 -21304345 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1609 387 277 7 28 chr4 134326041 134326182 -21303938 - MIR3 SINE MIR -13 195 58 7 1609 433 268 128 47 chr4 134326304 134326476 -21303644 - ID_B1 SINE B4 -37 187 2 7 1609 850 177 0 39 chr4 134326514 134326667 -21303453 - B1_Mur2 SINE Alu -1 148 2 7 1609 1236 54 0 0 chr4 134326877 134327025 -21303095 - B1_Mus1 SINE Alu 0 148 1 7 1609 266 358 12 0 chr4 134327144 134327225 -21302895 + RSINE1 SINE B4 55 136 -29 7 1609 1220 48 0 0 chr4 134327694 134327841 -21302279 - B1_Mus2 SINE Alu 0 147 1 7 1609 208 322 0 0 chr4 134328367 134328426 -21301694 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1609 292 325 122 15 chr4 134328427 134328624 -21301496 + MIRb SINE MIR 30 247 -21 7 1609 611 99 42 7 chr4 134329249 134329391 -21300729 + (CA)n Simple_repeat Simple_repeat 1 147 0 7 1609 254 265 0 105 chr4 134329439 134329553 -21300567 + MIRm SINE MIR 24 125 -151 7 1609 229 175 0 0 chr4 134329634 134329674 -21300446 + G-rich Low_complexity Low_complexity 1 40 0 7 1609 390 260 82 25 chr4 134329822 134329980 -21300140 + B3 SINE B2 45 211 -5 7 1609 197 119 0 23 chr4 134330001 134330044 -21300076 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 7 1609 730 184 57 0 chr4 134330045 134330186 -21299934 - B1_Mur2 SINE Alu 0 149 1 7 1609 225 299 38 25 chr4 134330327 134330406 -21299714 + RMER30 DNA MER1_type 23 102 -100 7 1609 33 0 0 0 chr4 134330486 134330519 -21299601 + AT_rich Low_complexity Low_complexity 1 33 0 7 1609 465 286 16 0 chr4 134330519 134330645 -21299475 - RSINE1 SINE B4 -35 130 3 7 1609 841 297 18 0 chr4 134330645 134330866 -21299254 - B4A SINE B4 -62 230 6 7 1609 304 77 0 37 chr4 134331074 134331128 -21298992 + (TCCCC)n Simple_repeat Simple_repeat 1 52 0 7 1609 257 298 55 69 chr4 134331129 134331308 -21298812 + L2b LINE L2 3022 3193 -194 7 1609 581 230 182 30 chr4 134331741 134331935 -21298185 - RMER5 LTR ERV1 -11 523 301 7 1609 291 114 0 0 chr4 134331935 134331979 -21298141 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1609 581 230 182 30 chr4 134331979 134332053 -21298067 - RMER5 LTR ERV1 -234 300 214 7 1609 953 66 58 7 chr4 134332075 134332213 -21297907 - B1_Mm SINE Alu -1 146 2 7 1609 369 0 0 0 chr4 134332459 134332500 -21297620 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1609 259 148 0 53 chr4 134332537 134332594 -21297526 - Lx4B LINE L1 -4 7054 7001 7 1609 2803 168 38 16 chr4 134332826 134333329 -21296791 + RLTR18 LTR ERVK 1 514 -102 7 1609 614 241 119 35 chr4 134333409 134333611 -21296509 + MER45B DNA Tip100 715 933 -107 7 1609 296 68 25 63 chr4 134333651 134333730 -21296390 + T-rich Low_complexity Low_complexity 3 78 0 7 1609 1251 48 0 0 chr4 134333752 134333897 -21296223 - B1_Mm SINE Alu 0 147 3 7 1609 3806 151 83 34 chr4 134333899 134334606 -21295514 + RMER19B LTR ERVK 142 883 -19 7 1609 1075 63 225 6 chr4 134334607 134334767 -21295353 + B2_Mm2 SINE B2 1 195 0 7 1609 393 22 0 0 chr4 134334883 134334929 -21295191 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1609 369 268 0 125 chr4 134335747 134335875 -21294245 - ID_B1 SINE B4 -9 215 104 7 1609 319 319 33 100 chr4 134335875 134335897 -21294223 - B1F SINE Alu -9 140 1 7 1609 304 274 140 59 chr4 134336227 134336363 -21293757 - RSINE1 SINE B4 -4 161 15 7 1609 810 225 49 11 chr4 134336494 134336678 -21293442 + B3 SINE B2 2 192 -24 7 1609 908 130 116 76 chr4 134336679 134336903 -21293217 - RMER1B Other Other -4 1062 830 7 1609 491 170 292 0 chr4 134336916 134337022 -21293098 - B1_Mur4 SINE Alu -13 137 1 7 1609 942 92 35 0 chr4 134337042 134337183 -21292937 - B1_Mus2 SINE Alu 0 147 2 7 1609 29 28 0 0 chr4 134337183 134337219 -21292901 + AT_rich Low_complexity Low_complexity 1 36 0 7 1609 822 148 0 0 chr4 134337294 134337470 -21292650 + (TG)n Simple_repeat Simple_repeat 2 177 0 7 1609 255 289 21 7 chr4 134338025 134338120 -21292000 + CT-rich Low_complexity Low_complexity 1 96 0 7 1609 198 0 0 0 chr4 134338130 134338152 -21291968 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 7 1609 505 262 0 0 chr4 134339039 134339142 -21290978 + B1F1 SINE Alu 2 104 -45 7 1609 449 321 59 9 chr4 134339236 134339456 -21290664 - RMER15 LTR ERVL 0 575 345 7 1609 1892 176 81 43 chr4 134339509 134340186 -21289934 + RMER19B LTR ERVK 1 748 -154 7 1609 351 0 0 0 chr4 134340211 134340250 -21289870 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 1609 1312 73 11 6 chr4 134340273 134340452 -21289668 + B2_Mm2 SINE B2 14 193 -2 7 1609 700 169 254 6 chr4 134340721 134340894 -21289226 - B3 SINE B2 0 216 1 7 1609 402 319 118 0 chr4 134341080 134341224 -21288896 + ID_B1 SINE B4 37 197 -27 7 1609 661 314 39 42 chr4 134341226 134341489 -21288631 + B4 SINE B4 2 265 -27 7 1609 444 82 0 0 chr4 134341489 134341550 -21288570 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1609 661 314 39 42 chr4 134341550 134341572 -21288548 + B4 SINE B4 266 286 -6 7 1609 240 59 0 0 chr4 134341734 134341768 -21288352 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 7 1609 438 149 0 0 chr4 134342109 134342196 -21287924 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 1609 651 189 121 0 chr4 134342465 134342597 -21287523 - B1_Mur1 SINE Alu 0 149 2 7 1609 1092 38 8 0 chr4 134342597 134342708 -21287412 + B1_Mm SINE Alu 36 147 0 7 1609 1030 96 140 6 chr4 134343117 134343274 -21286846 + B2_Mm1t SINE B2 2 179 -14 7 1609 368 91 0 39 chr4 134343287 134343395 -21286725 + B2_Mm2 SINE B2 47 186 -9 7 1609 498 270 107 28 chr4 134344082 134344229 -21285891 - B3A SINE B2 -26 190 29 7 1609 29 0 0 0 chr4 134344260 134344289 -21285831 + AT_rich Low_complexity Low_complexity 1 29 0 7 1609 306 73 0 0 chr4 134344351 134344392 -21285728 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1609 1196 34 0 58 chr4 134344446 134344601 -21285519 - B1_Mus2 SINE Alu 0 147 2 7 1609 320 268 69 42 chr4 134344601 134344745 -21285375 - B4A SINE B4 -63 229 82 8 1609 297 0 0 0 chr4 134344745 134344778 -21285342 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1609 931 152 0 20 chr4 134344787 134344935 -21285185 - B1_Mus2 SINE Alu -1 146 2 8 1609 322 268 12 12 chr4 134344936 134345019 -21285101 - B4A SINE B4 -203 89 7 8 1609 492 349 71 7 chr4 134345038 134345100 -21285020 - L1MB7 LINE L1 -55 6129 6068 8 1609 2149 158 71 0 chr4 134345100 134345468 -21284652 - ORR1B1 LTR MaLR 0 394 1 8 1609 492 349 71 7 chr4 134345468 134345688 -21284432 - L1MB7 LINE L1 -117 6067 5829 8 1609 256 286 22 112 chr4 134345780 134345914 -21284206 + LTR16C LTR ERVL 295 416 -73 8 1609 229 220 0 106 chr4 134345985 134346051 -21284069 - MIRc SINE MIR -98 170 112 8 1609 270 192 19 0 chr4 134346739 134346791 -21283329 - ID_B1 SINE B4 -6 218 166 8 1609 495 176 12 0 chr4 134346816 134346901 -21283219 - ID_B1 SINE B4 -6 218 133 8 1609 243 262 111 86 chr4 134347082 134347199 -21282921 - PB1D7 SINE Alu 0 120 1 8 1609 181 347 31 21 chr4 134347374 134347471 -21282649 - MIR SINE MIR -86 122 25 8 1609 223 261 32 54 chr4 134347852 134347945 -21282175 - MIRc SINE MIR -90 178 85 8 1609 1146 199 75 80 chr4 134348313 134348592 -21281528 + ORR1C2 LTR MaLR 5 325 -59 8 1609 1088 65 72 0 chr4 134348592 134348730 -21281390 - B1_Mus1 SINE Alu 0 148 1 8 1609 1146 194 66 82 chr4 134348730 134348787 -21281333 + ORR1C2 LTR MaLR 326 384 0 8 1610 1146 52 0 0 chr4 134348951 134349086 -21281034 + B1_Mus2 SINE Alu 1 135 -12 8 1610 234 0 0 0 chr4 134349087 134349113 -21281007 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1610 225 338 166 38 chr4 134349368 134349525 -21280595 + B4 SINE B4 3 179 -113 8 1610 757 260 0 0 chr4 134349651 134349801 -21280319 - B3A SINE B2 -47 151 2 8 1610 833 214 5 110 chr4 134349869 134350069 -21280051 - B3 SINE B2 -5 211 33 8 1610 1645 36 5 0 chr4 134350153 134350345 -21279775 + B2_Mm1a SINE B2 1 193 0 8 1610 1380 160 9 0 chr4 134350367 134350579 -21279541 + B3 SINE B2 2 215 -1 8 1610 28 0 0 0 chr4 134350589 134350617 -21279503 + AT_rich Low_complexity Low_complexity 1 28 0 8 1610 1191 83 0 0 chr4 134350619 134350764 -21279356 - B1_Mus2 SINE Alu 0 147 3 8 1610 1555 53 16 5 chr4 134350774 134350965 -21279155 - B2_Mm2 SINE B2 -2 193 1 8 1610 987 136 31 27 chr4 134350995 134351180 -21278940 + B2_Mm2 SINE B2 2 192 -1 8 1610 470 237 66 97 chr4 134351157 134351194 -21278926 - B2_Mm2 SINE B2 -4 191 163 8 1610 863 48 3 62 chr4 134351194 134351488 -21278632 + (TG)n Simple_repeat Simple_repeat 1 276 0 8 1610 470 237 66 97 chr4 134351488 134351510 -21278610 - B2_Mm2 SINE B2 -33 162 144 8 1610 1115 39 0 63 chr4 134351510 134351816 -21278304 + (TG)n Simple_repeat Simple_repeat 1 286 0 8 1610 523 164 198 10 chr4 134351816 134351943 -21278177 - B3 SINE B2 -67 149 2 8 1610 346 202 50 12 chr4 134352224 134352304 -21277816 - ID4 SINE ID 0 83 1 8 1610 250 146 128 120 chr4 134352336 134352453 -21277667 - B1F SINE Alu -26 123 6 8 1610 590 226 4 16 chr4 134353365 134353482 -21276638 + PB1 SINE Alu 1 114 -36 8 1610 218 267 137 10 chr4 134353945 134354047 -21276073 + PB1D10 SINE Alu 2 116 -1 8 1610 380 229 9 62 chr4 134354052 134354164 -21275956 + PB1D10 SINE Alu 4 109 -8 8 1610 208 135 68 0 chr4 134354172 134354246 -21275874 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 8 1610 333 0 0 0 chr4 134354251 134354288 -21275832 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1610 894 173 0 0 chr4 134354289 134354428 -21275692 - B1_Mur4 SINE Alu -8 142 4 8 1610 383 170 40 0 chr4 134354832 134354932 -21275188 + CT-rich Low_complexity Low_complexity 4 107 0 8 1610 465 305 28 14 chr4 134354956 134355099 -21275021 - RSINE1 SINE B4 -13 152 8 8 1610 41 0 0 0 chr4 134355794 134355835 -21274285 + AT_rich Low_complexity Low_complexity 1 41 0 8 1610 457 153 99 30 chr4 134356495 134356596 -21273524 + B1_Mur1 SINE Alu 40 147 -2 8 1610 229 286 131 39 chr4 134357043 134357196 -21272924 + B4A SINE B4 2 168 -124 8 1610 231 271 39 103 chr4 134358947 134359103 -21271017 - Tigger10 DNA Tigger -1221 622 477 8 1610 180 342 49 25 chr4 134361276 134361357 -21268763 + L2b LINE L2 3246 3328 -47 8 1610 180 179 0 0 chr4 134363048 134363087 -21267033 + T-rich Low_complexity Low_complexity 14 52 0 8 1610 585 281 7 0 chr4 134363090 134363229 -21266891 - B1_Mur1 SINE Alu -8 141 2 8 1610 240 55 0 53 chr4 134363246 134363284 -21266836 - B1_Mm SINE Alu 0 147 112 8 1610 935 136 7 0 chr4 134363540 134363680 -21266440 + B1_Mur4 SINE Alu 6 146 -4 8 1610 443 270 8 17 chr4 134363867 134363984 -21266136 + PB1D7 SINE Alu 5 120 0 8 1610 26 0 0 0 chr4 134364072 134364098 -21266022 + AT_rich Low_complexity Low_complexity 1 26 0 8 1610 637 72 512 0 chr4 134364101 134364226 -21265894 + B2_Mm2 SINE B2 1 189 -6 8 1610 682 266 54 20 chr4 134364229 134364432 -21265688 - B3 SINE B2 0 216 7 8 1610 656 178 0 8 chr4 134364716 134364835 -21265285 - PB1D9 SINE Alu 0 120 3 8 1610 800 225 52 29 chr4 134364867 134365077 -21265043 - B3 SINE B2 0 216 2 8 1610 368 301 57 0 chr4 134365666 134365789 -21264331 - MER2B DNA MER2_type -1 335 206 8 1610 225 0 0 0 chr4 134365895 134365920 -21264200 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1610 883 140 36 7 chr4 134365923 134366060 -21264060 - B1_Mus1 SINE Alu -7 141 1 8 1610 426 252 46 9 chr4 134366093 134366201 -21263919 - B4A SINE B4 -130 162 51 8 1610 264 218 135 29 chr4 134366202 134366230 -21263890 - BC1_Mm scRNA scRNA -36 116 2 8 1610 347 162 171 26 chr4 134366230 134366306 -21263814 - B4 SINE B4 -204 88 2 8 1610 1079 57 182 0 chr4 134366325 134366484 -21263636 + B2_Mm2 SINE B2 1 188 -7 8 1610 647 251 87 0 chr4 134366493 134366676 -21263444 + B3 SINE B2 18 216 0 8 1610 300 260 13 40 chr4 134367661 134367737 -21262383 - PB1D10 SINE Alu -2 115 42 8 1610 204 290 61 61 chr4 134369323 134369422 -21260698 - MIR SINE MIR -40 222 124 8 1610 949 180 0 0 chr4 134370864 134371014 -21259106 - B1_Mur4 SINE Alu 0 150 1 8 1610 434 236 38 75 chr4 134371069 134371202 -21258918 + B1_Mus2 SINE Alu 17 144 -3 8 1610 534 284 38 19 chr4 134371342 134371500 -21258620 - RSINE1 SINE B4 -3 162 2 8 1610 273 214 107 0 chr4 134371737 134371793 -21258327 - ID4_ SINE ID -20 63 2 8 1610 248 185 144 32 chr4 134371828 134371899 -21258221 - B1_Mur3 SINE Alu -13 107 37 8 1610 1269 14 0 0 chr4 134372380 134372519 -21257601 + B1_Mus1 SINE Alu 1 139 -9 8 1610 186 43 0 0 chr4 134372519 134372542 -21257578 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1610 272 175 35 0 chr4 134372849 134372906 -21257214 + RSINE1 SINE B4 74 132 -33 8 1610 423 0 0 0 chr4 134372950 134372997 -21257123 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1610 598 254 0 0 chr4 134373052 134373166 -21256954 - PB1D9 SINE Alu -5 115 2 8 1610 21 0 0 0 chr4 134374323 134374344 -21255776 + AT_rich Low_complexity Low_complexity 1 21 0 8 1610 188 0 74 0 chr4 134374425 134374452 -21255668 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 8 1610 1052 59 81 0 chr4 134374466 134374602 -21255518 - B1_Mus2 SINE Alu 0 147 1 8 1610 1943 161 117 0 chr4 134375757 134376099 -21254021 + ORR1B1 LTR MaLR 13 394 0 8 1610 763 219 14 0 chr4 134376327 134376473 -21253647 + B1_Mur1 SINE Alu 2 149 0 8 1610 334 263 13 13 chr4 134376563 134376640 -21253480 + B4 SINE B4 2 78 -214 8 1610 1194 176 13 22 chr4 134378382 134378609 -21251511 + URR1B DNA MER1_type 1 225 0 8 1610 267 103 0 0 chr4 134378686 134378725 -21251395 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 8 1610 327 133 0 0 chr4 134378725 134378785 -21251335 - B2_Mm1t SINE B2 0 193 134 8 1610 25 0 0 0 chr4 134378785 134378810 -21251310 + AT_rich Low_complexity Low_complexity 1 25 0 8 1610 350 345 20 40 chr4 134378990 134379141 -21250979 + ID_B1 SINE B4 77 224 0 8 1610 566 261 22 15 chr4 134379007 134379143 -21250977 + B1_Mur2 SINE Alu 13 149 0 8 1610 489 233 139 0 chr4 134379574 134379703 -21250417 - MER58B DNA MER1_type -13 328 182 8 1610 377 261 101 158 chr4 134379725 134379934 -21250186 + B3A SINE B2 1 197 -1 8 1610 548 294 0 14 chr4 134379938 134380083 -21250037 + B1F2 SINE Alu 6 148 -1 8 1610 733 150 59 15 chr4 134380116 134380251 -21249869 + B1_Mus1 SINE Alu 2 142 -6 8 1610 21 0 0 0 chr4 134380257 134380278 -21249842 + AT_rich Low_complexity Low_complexity 1 21 0 8 1610 284 118 471 0 chr4 134380372 134380457 -21249663 + B2_Mm2 SINE B2 47 171 -24 8 1610 1832 132 96 10 chr4 134380453 134380767 -21249353 + MTC LTR MaLR 81 421 0 8 1610 884 214 24 48 chr4 134380952 134381158 -21248962 + B3 SINE B2 3 203 -13 8 1610 801 181 34 14 chr4 134381478 134381624 -21248496 + B1_Mur3 SINE Alu 1 149 0 8 1610 341 189 196 112 chr4 134381713 134381751 -21248369 - PB1D9 SINE Alu -2 118 81 8 1610 1633 16 22 0 chr4 134381751 134381935 -21248185 - B2_Mm1a SINE B2 -4 189 2 8 1610 341 189 196 112 chr4 134381935 134382003 -21248117 - PB1D9 SINE Alu -40 80 3 8 1610 1241 48 0 0 chr4 134382041 134382188 -21247932 + B1_Mus2 SINE Alu 1 147 0 8 1610 296 111 19 0 chr4 134383196 134383250 -21246870 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1610 414 115 0 0 chr4 134383250 134383311 -21246809 - RSINE1 SINE B4 -41 124 64 8 1610 22 0 0 0 chr4 134383329 134383351 -21246769 + AT_rich Low_complexity Low_complexity 1 22 0 8 1610 944 116 65 0 chr4 134383351 134383489 -21246631 - B1_Mus1 SINE Alu 0 148 2 9 1610 25 31 0 0 chr4 134384639 134384671 -21245449 + AT_rich Low_complexity Low_complexity 1 32 0 9 1610 229 196 71 0 chr4 134384766 134384822 -21245298 - MT2A LTR ERVL -71 462 403 9 1610 351 260 26 13 chr4 134384858 134384936 -21245184 + RSINE1 SINE B4 6 84 -81 9 1610 192 40 0 0 chr4 134384950 134384975 -21245145 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1610 780 155 0 0 chr4 134384985 134385127 -21244993 + CT-rich Low_complexity Low_complexity 1 142 0 9 1610 545 207 165 35 chr4 134385424 134385594 -21244526 + B2_Mm2 SINE B2 1 192 -3 9 1610 1621 42 5 0 chr4 134385671 134385861 -21244259 + B2_Mm1a SINE B2 2 192 -1 9 1610 753 203 176 0 chr4 134386079 134386261 -21243859 + B3 SINE B2 1 214 -2 9 1610 1547 43 27 0 chr4 134386919 134387104 -21243016 + B2_Mm1a SINE B2 2 191 -2 9 1610 376 275 469 19 chr4 134387139 134387341 -21242779 + Lx8 LINE L1 7052 7352 -121 9 1610 1089 88 141 0 chr4 134387341 134387511 -21242609 + B2_Mm2 SINE B2 2 195 0 9 1610 376 286 101 45 chr4 134387511 134387538 -21242582 + Lx8 LINE L1 7353 7383 -90 9 1610 414 0 0 0 chr4 134387538 134387584 -21242536 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1610 376 286 101 45 chr4 134387584 134387674 -21242446 + Lx8 LINE L1 7384 7468 -5 9 1610 396 242 56 77 chr4 134387697 134387840 -21242280 + MT2B LTR ERVL 118 257 -344 9 1610 414 242 69 90 chr4 134387734 134387879 -21242241 + B4 SINE B4 79 220 -72 9 1610 831 159 8 0 chr4 134387753 134387885 -21242235 + B1_Mus2 SINE Alu 15 147 0 9 1610 1032 103 65 29 chr4 134388083 134388253 -21241867 + B2_Mm2 SINE B2 5 180 -15 9 1610 1301 79 57 0 chr4 134388691 134388868 -21241252 + B2_Mm2 SINE B2 2 188 -7 9 1610 187 229 129 0 chr4 134388964 134389034 -21241086 - MIR SINE MIR -72 136 58 9 1610 493 252 23 68 chr4 134389529 134389661 -21240459 + PB1 SINE Alu 1 126 -1 9 1610 417 230 14 0 chr4 134389675 134389749 -21240371 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 9 1610 461 250 65 79 chr4 134389789 134389928 -21240192 + B1_Mur1 SINE Alu 13 149 0 9 1610 210 171 0 0 chr4 134389928 134389969 -21240151 + A-rich Low_complexity Low_complexity 1 41 0 9 1610 22 35 0 0 chr4 134390044 134390073 -21240047 + AT_rich Low_complexity Low_complexity 1 29 0 9 1610 705 144 121 0 chr4 134390073 134390205 -21239915 + B1_Mus1 SINE Alu 1 148 0 9 1610 240 284 53 0 chr4 134390284 134390379 -21239741 + L1M5 LINE L1 5560 5659 -581 9 1610 325 290 129 0 chr4 134390384 134390477 -21239643 + L1MC LINE L1 5694 5798 -2084 9 1610 458 230 0 0 chr4 134390507 134390594 -21239526 + B1_Mus2 SINE Alu 2 88 -59 9 1610 647 194 59 7 chr4 134390904 134391039 -21239081 + B1_Mur2 SINE Alu 6 147 -2 9 1610 319 321 50 0 chr4 134391255 134391346 -21238774 + B1F2 SINE Alu 1 95 -22 9 1610 1176 124 16 42 chr4 134391352 134391545 -21238575 + B2_Mm2 SINE B2 3 190 -5 9 1610 352 301 38 95 chr4 134391915 134391931 -21238189 + B4A SINE B4 73 79 -213 9 1610 698 226 7 0 chr4 134391931 134392077 -21238043 + B1_Mur2 SINE Alu 1 147 -2 9 1610 349 202 70 124 chr4 134393113 134393206 -21236914 + Charlie1a DNA MER1_type 1280 1365 -90 9 1610 661 197 51 7 chr4 134393206 134393344 -21236776 - B1_Mur1 SINE Alu -5 144 1 9 1610 349 202 70 124 chr4 134393344 134393436 -21236684 + Charlie1a DNA MER1_type 1366 1455 0 9 1610 1140 107 6 6 chr4 134394635 134394795 -21235325 + B2_Mm1t SINE B2 2 161 -32 9 1610 298 87 7 173 chr4 134394859 134394936 -21235184 + B2_Mm2 SINE B2 46 116 -82 9 1610 198 0 0 0 chr4 134394943 134394965 -21235155 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 9 1610 417 313 84 0 chr4 134395103 134395234 -21234886 + B1F1 SINE Alu 1 142 -7 9 1610 1173 43 0 0 chr4 134395262 134395400 -21234720 + B1_Mm SINE Alu 5 142 -5 9 1610 266 107 18 0 chr4 134395402 134395458 -21234662 + (CAAAAA)n Simple_repeat Simple_repeat 1 57 0 9 1610 303 294 118 35 chr4 134395520 134395689 -21234431 + L1M5 LINE L1 5649 5831 -348 9 1610 229 201 0 49 chr4 134395794 134395866 -21234254 + B1F SINE Alu 49 141 -8 9 1610 1040 175 87 10 chr4 134396614 134396810 -21233310 + B3 SINE B2 1 211 -5 9 1610 950 72 0 179 chr4 134396858 134397026 -21233094 - B1_Mus2 SINE Alu -9 138 1 9 1610 186 133 0 0 chr4 134397026 134397056 -21233064 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 9 1610 240 342 0 92 chr4 134397161 134397173 -21232947 - ID4_ SINE ID -1 82 4 9 1610 273 323 0 0 chr4 134397173 134397234 -21232886 - tRNA-Ala-GCY_ tRNA tRNA -7 68 8 9 1610 252 347 0 40 chr4 134397173 134397248 -21232872 - ID SINE ID -149 75 4 9 1610 1382 89 10 5 chr4 134397419 134397611 -21232509 - B2_Mm1t SINE B2 0 193 1 9 1610 28 51 0 17 chr4 134397654 134397699 -21232421 + AT_rich Low_complexity Low_complexity 1 45 0 9 1610 999 54 138 0 chr4 134397699 134397829 -21232291 - B1_Mus1 SINE Alu 0 148 1 9 1610 28 51 0 17 chr4 134397829 134397843 -21232277 + AT_rich Low_complexity Low_complexity 1 14 0 9 1610 829 267 30 5 chr4 134397850 134398053 -21232067 - B3 SINE B2 -7 209 2 9 1610 1560 43 27 0 chr4 134398407 134398595 -21231525 + B2_Mm1t SINE B2 1 193 0 9 1610 239 148 97 11 chr4 134398713 134398796 -21231324 + L1M5 LINE L1 5548 5643 -801 9 1610 758 154 115 0 chr4 134398942 134399072 -21231048 - B1_Mur4 SINE Alu -4 146 2 9 1610 750 271 10 45 chr4 134399152 134399353 -21230767 - B3A SINE B2 -3 195 2 9 1610 613 256 11 67 chr4 134399360 134399540 -21230580 - ID_B1 SINE B4 -1 223 54 9 1610 986 41 0 8 chr4 134400147 134400269 -21229851 + B1_Mm SINE Alu 27 147 0 9 1610 536 175 0 28 chr4 134400276 134400357 -21229763 + polypurine Low_complexity Low_complexity 2 81 0 9 1610 1180 58 0 0 chr4 134400357 134400496 -21229624 + B1_Mus1 SINE Alu 1 139 -9 9 1610 243 0 0 0 chr4 134400496 134400523 -21229597 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1610 536 175 0 28 chr4 134400523 134400581 -21229539 + polypurine Low_complexity Low_complexity 82 137 0 9 1610 1203 107 0 0 chr4 134400584 134400762 -21229358 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 9 1610 774 266 48 15 chr4 134400772 134400978 -21229142 + B3 SINE B2 4 216 0 9 1610 27 0 0 0 chr4 134401019 134401046 -21229074 + AT_rich Low_complexity Low_complexity 1 27 0 9 1610 839 169 7 14 chr4 134401059 134401203 -21228917 - B1_Mus1 SINE Alu 0 148 6 9 1610 768 242 58 11 chr4 134401206 134401394 -21228726 - B3 SINE B2 -17 199 3 9 1610 1314 94 17 0 chr4 134401793 134401974 -21228146 + B2_Mm2 SINE B2 1 184 -11 9 1610 536 42 14 0 chr4 134401974 134402045 -21228075 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 9 1610 21 0 0 0 chr4 134402441 134402462 -21227658 + AT_rich Low_complexity Low_complexity 1 21 0 9 1610 384 103 0 0 chr4 134402523 134402581 -21227539 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1610 548 269 18 43 chr4 134402588 134402751 -21227369 - RSINE1 SINE B4 -3 162 4 9 1610 891 203 6 6 chr4 134403203 134403362 -21226758 - B3 SINE B2 -56 160 2 9 1610 367 231 9 9 chr4 134405069 134405178 -21224942 + (TA)n Simple_repeat Simple_repeat 2 110 0 9 1610 1173 67 10 127 chr4 134405291 134405496 -21224624 + B2_Mm1t SINE B2 1 181 -12 9 1610 1187 81 0 0 chr4 134405496 134405643 -21224477 + B1_Mus1 SINE Alu 1 148 0 9 1610 252 83 0 0 chr4 134405662 134405698 -21224422 - URR1B DNA MER1_type 0 225 190 9 1610 518 192 20 7 chr4 134405807 134405959 -21224161 + (TA)n Simple_repeat Simple_repeat 1 154 0 9 1610 1387 140 13 43 chr4 134406111 134406343 -21223777 + URR1B DNA MER1_type 1 225 0 9 1610 183 306 105 68 chr4 134406565 134406698 -21223422 - MIR3 SINE MIR -64 144 7 9 1610 249 286 107 0 chr4 134407734 134407818 -21222302 + L2a LINE L2 3334 3426 0 9 1610 21 0 0 0 chr4 134408282 134408303 -21221817 + AT_rich Low_complexity Low_complexity 1 21 0 9 1610 24 53 0 0 chr4 134408716 134408754 -21221366 + GC_rich Low_complexity Low_complexity 1 38 0 9 1610 23 54 0 0 chr4 134409041 134409078 -21221042 + GC_rich Low_complexity Low_complexity 1 37 0 9 1610 22 70 0 0 chr4 134409233 134409276 -21220844 + GC_rich Low_complexity Low_complexity 1 43 0 9 1610 225 65 0 0 chr4 134409788 134409819 -21220301 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1610 21 82 0 0 chr4 134409917 134409966 -21220154 + GC_rich Low_complexity Low_complexity 1 49 0 9 1610 617 222 41 7 chr4 134410120 134410265 -21219855 + RSINE1 SINE B4 4 153 -12 9 1610 524 135 111 37 chr4 134410309 134410417 -21219703 + B1_Mm SINE Alu 3 118 -29 9 1610 296 48 24 0 chr4 134410436 134410478 -21219642 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 9 1610 294 209 15 0 chr4 134411021 134411088 -21219032 - B1_Mur3 SINE Alu -1 148 81 9 1610 531 0 0 0 chr4 134411096 134411155 -21218965 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1610 351 0 0 0 chr4 134411155 134411193 -21218927 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1610 764 194 15 7 chr4 134411203 134411338 -21218782 - B1_Mur3 SINE Alu -7 142 7 9 1610 358 273 72 86 chr4 134411338 134411349 -21218771 - B4 SINE B4 -67 183 76 9 1610 281 246 130 0 chr4 134411531 134411600 -21218520 + MIRb SINE MIR 51 128 -140 9 1610 366 293 0 92 chr4 134411751 134411886 -21218234 - PB1D7 SINE Alu 0 120 1 9 1610 553 171 9 9 chr4 134411913 134412025 -21218095 - PB1D7 SINE Alu -8 112 1 9 1610 1332 80 31 26 chr4 134413396 134413588 -21216532 - B2_Mm2 SINE B2 -2 193 1 1 1610 319 309 0 50 chr4 134413659 134413758 -21216362 - RSINE1 SINE B4 -69 96 3 1 1610 191 271 21 0 chr4 134413923 134413971 -21216149 + L3 LINE CR1 6 54 -4435 1 1610 430 277 109 41 chr4 134414083 134414230 -21215890 + ID_B1 SINE B4 13 169 -55 1 1610 1451 201 70 45 chr4 134414247 134414559 -21215561 + MTEa LTR MaLR 6 325 -54 1 1610 484 257 63 14 chr4 134414597 134414739 -21215381 + MER58A DNA MER1_type 50 198 -26 1 1610 478 126 11 0 chr4 134414760 134414847 -21215273 - Lx LINE L1 0 6654 6567 1 1610 529 263 33 25 chr4 134415225 134415394 -21214726 + ID_B1 SINE B4 48 214 -78 1 1610 305 271 7 135 chr4 134415559 134415700 -21214420 - RSINE1 SINE B4 -39 126 4 1 1610 431 346 21 38 chr4 134415736 134415922 -21214198 - MIR SINE MIR -79 183 1 1 1610 1374 79 16 10 chr4 134415990 134416182 -21213938 - B2_Mm1t SINE B2 0 193 1 1 1610 273 235 162 0 chr4 134416275 134416343 -21213777 - ID4 SINE ID -3 80 2 1 1610 564 258 125 6 chr4 134416343 134416492 -21213628 - MIRb SINE MIR -68 200 32 1 1610 404 301 113 19 chr4 134416936 134417095 -21213025 - MTE2b LTR MaLR 0 379 206 1 1610 1114 161 5 20 chr4 134417115 134417311 -21212809 + B3 SINE B2 18 210 -6 1 1610 853 244 30 0 chr4 134417321 134417522 -21212598 - MTE2b LTR MaLR -170 209 3 1 1610 768 132 0 26 chr4 134417530 134417647 -21212473 + B1_Mur4 SINE Alu 27 140 -10 1 1610 248 368 57 0 chr4 134417668 134417774 -21212346 - ORR1E LTR MaLR -247 112 1 1 1610 366 316 55 2 chr4 134418097 134418242 -21211878 + MIR SINE MIR 39 209 -59 1 1610 784 170 22 0 chr4 134418242 134418377 -21211743 + B1_Mus1 SINE Alu 1 138 -10 1 1610 239 0 0 31 chr4 134418383 134418415 -21211705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1610 950 310 52 11 chr4 134418635 134418906 -21211214 - B4A SINE B4 -9 283 2 1 1610 898 256 207 19 chr4 134419005 134419324 -21210796 + MTE2a LTR MaLR 1 379 0 1 1610 880 162 13 26 chr4 134419325 134419477 -21210643 + B1_Mur4 SINE Alu 1 150 0 1 1610 782 71 18 0 chr4 134419490 134419603 -21210517 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 1 1610 1213 61 0 0 chr4 134419613 134419760 -21210360 + B1_Mus2 SINE Alu 1 147 0 1 1610 757 127 15 0 chr4 134419772 134419906 -21210214 + (GGAA)n Simple_repeat Simple_repeat 1 136 0 1 1610 684 237 29 0 chr4 134420088 134420227 -21209893 + B1F2 SINE Alu 1 143 -6 1 1610 234 81 0 0 chr4 134420246 134420283 -21209837 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1610 428 297 24 61 chr4 134421041 134421206 -21208914 - B3A SINE B2 -3 195 37 1 1610 903 169 14 0 chr4 134421619 134421761 -21208359 - B1_Mur4 SINE Alu -6 144 1 1 1610 198 321 113 7 chr4 134421881 134422022 -21208098 - MIRc SINE MIR -24 244 89 1 1610 1047 16 0 0 chr4 134422094 134422215 -21207905 + (TTC)n Simple_repeat Simple_repeat 1 121 0 1 1610 1135 96 0 13 chr4 134422215 134422373 -21207747 - B2_Mm2 SINE B2 -38 157 2 1 1610 955 87 0 0 chr4 134422443 134422569 -21207551 - B1_Mus2 SINE Alu -21 126 1 1 1610 361 236 277 2 chr4 134422620 134422768 -21207352 + B3 SINE B2 4 186 -12 1 1610 315 322 52 39 chr4 134422794 134422833 -21207287 + L1MEg LINE L1 1804 1840 -4244 1 1610 1044 128 7 0 chr4 134422833 134422982 -21207138 + B1_Mur4 SINE Alu 1 150 0 1 1610 315 322 52 39 chr4 134422982 134423097 -21207023 + L1MEg LINE L1 1841 1959 -4125 1 1610 904 251 153 46 chr4 134423386 134423557 -21206563 - ORR1D1 LTR MaLR -13 361 150 1 1610 1180 61 0 0 chr4 134423557 134423704 -21206416 - B1_Mus1 SINE Alu 0 148 2 1 1610 904 251 153 46 chr4 134423704 134423858 -21206262 - ORR1D1 LTR MaLR -225 149 1 1 1610 247 192 19 0 chr4 134423981 134424033 -21206087 - MLT1H2 LTR MaLR -6 573 521 1 1610 290 241 65 57 chr4 134424032 134424045 -21206075 + B4A SINE B4 71 84 -208 1 1610 634 158 7 57 chr4 134424045 134424186 -21205934 + B1_Mus1 SINE Alu 1 134 -14 1 1610 308 321 239 15 chr4 134424199 134424534 -21205586 - MLT1H2 LTR MaLR -77 412 3 1 1610 182 37 37 0 chr4 134424825 134424852 -21205268 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 1 1610 204 253 25 62 chr4 134425018 134425098 -21205022 - MIRc SINE MIR -78 190 114 1 1610 319 245 96 0 chr4 134425161 134425255 -21204865 + MIR SINE MIR 50 152 -110 1 1610 296 301 30 24 chr4 134425944 134426105 -21204015 - MIR3 SINE MIR -15 193 36 1 1610 315 0 0 0 chr4 134426325 134426360 -21203760 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1610 251 292 26 70 chr4 134426670 134426784 -21203336 + RLTR11A LTR ERVK 66 174 -354 1 1610 1675 201 2 80 chr4 134427029 134427236 -21202884 - RMER10B LTR ERVL 0 398 205 1 1610 1308 79 0 0 chr4 134427236 134427414 -21202706 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1610 1675 201 2 80 chr4 134427414 134427633 -21202487 - RMER10B LTR ERVL -194 204 5 1 1610 198 0 0 0 chr4 134427697 134427719 -21202401 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1610 712 136 0 33 chr4 134427733 134427855 -21202265 - B1_Mus1 SINE Alu -1 147 30 1 1610 419 235 113 71 chr4 134427891 134428157 -21201963 - RMER10B LTR ERVL -121 277 1 1 1610 285 55 40 40 chr4 134428700 134428776 -21201344 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 1 1610 1270 34 0 7 chr4 134428776 134428923 -21201197 - B1_Mus1 SINE Alu -1 147 2 1 1610 916 236 33 14 chr4 134428952 134429163 -21200957 - B3 SINE B2 -1 215 1 1 1610 306 0 0 0 chr4 134429224 134429258 -21200862 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1610 1341 77 39 0 chr4 134429345 134429527 -21200593 - B2_Mm2 SINE B2 -6 189 1 1 1610 198 0 0 0 chr4 134429536 134429558 -21200562 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1610 204 111 0 0 chr4 134429936 134429972 -21200148 + (G)n Simple_repeat Simple_repeat 1 36 0 1 1610 1343 73 16 28 chr4 134429972 134430154 -21199966 + B2_Mm2 SINE B2 1 180 -15 1 1610 289 162 13 26 chr4 134430550 134430610 -21199510 + CT-rich Low_complexity Low_complexity 20 77 0 1 1610 724 133 131 15 chr4 134430610 134430740 -21199380 - B1_Mur4 SINE Alu -5 145 1 1 1610 289 162 13 26 chr4 134430740 134430755 -21199365 + polypyrimidine Low_complexity Low_complexity 4 19 0 1 1610 504 287 36 54 chr4 134430791 134430957 -21199163 - RSINE1 SINE B4 0 165 3 1 1610 1172 62 7 0 chr4 134431036 134431181 -21198939 - B1_Mm SINE Alu 0 147 2 1 1610 1623 47 0 0 chr4 134431198 134431391 -21198729 - B2_Mm1a SINE B2 0 193 1 1 1610 1553 67 0 5 chr4 134431396 134431592 -21198528 - B2_Mm2 SINE B2 0 195 1 1 1610 279 0 0 0 chr4 134431603 134431634 -21198486 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1610 839 74 205 0 chr4 134431640 134431762 -21198358 - B1_Mus2 SINE Alu 0 147 1 1 1610 372 303 39 13 chr4 134431980 134432134 -21197986 - MIR SINE MIR -18 244 87 1 1610 31 0 0 0 chr4 134432769 134432800 -21197320 + AT_rich Low_complexity Low_complexity 1 31 0 1 1610 1157 83 0 0 chr4 134432810 134432955 -21197165 + B1_Mus2 SINE Alu 1 145 -2 1 1610 1028 106 12 56 chr4 134432982 134433142 -21196978 + B2_Mm2 SINE B2 2 154 -41 1 1610 447 73 330 76 chr4 134433174 134433292 -21196828 + B2_Mm2 SINE B2 47 194 -1 1 1610 1057 102 27 0 chr4 134433291 134433438 -21196682 - B2_Mm2 SINE B2 -43 152 2 1 1610 896 149 0 0 chr4 134433482 134433616 -21196504 + B1_Mur3 SINE Alu 10 143 -6 1 1610 1612 37 21 0 chr4 134433618 134433807 -21196313 - B2_Mm1t SINE B2 0 193 1 1 1610 36 40 0 0 chr4 134433810 134433860 -21196260 + AT_rich Low_complexity Low_complexity 1 50 0 1 1610 311 315 107 84 chr4 134433861 134434076 -21196044 - MT2A LTR ERVL -115 418 199 1 1610 412 250 0 0 chr4 134434094 134434178 -21195942 - MTD LTR MaLR -299 120 37 1 1610 319 177 0 21 chr4 134434163 134434223 -21195897 - PB1D7 SINE Alu -80 69 12 1 1610 296 221 130 14 chr4 134434172 134434241 -21195879 - ID_B1 SINE B4 -82 142 66 1 1610 970 129 7 26 chr4 134434416 134434567 -21195553 - B1_Mur4 SINE Alu -2 148 1 1 1610 181 174 130 0 chr4 134435061 134435107 -21195013 + L2c LINE L2 3123 3174 -213 1 1610 182 37 0 36 chr4 134435162 134435190 -21194930 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1610 230 204 41 0 chr4 134435727 134435776 -21194344 + CT-rich Low_complexity Low_complexity 5 55 0 1 1610 261 0 0 0 chr4 134436102 134436131 -21193989 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1610 621 196 130 20 chr4 134436131 134436277 -21193843 - B2_Mm2 SINE B2 -33 162 1 1 1610 843 250 76 61 chr4 134436320 134436597 -21193523 - MT2B LTR ERVL 0 601 321 1 1610 306 132 94 0 chr4 134436605 134436658 -21193462 - MT2A LTR ERVL -475 58 1 1 1610 849 145 0 30 chr4 134436748 134436872 -21193248 - B1_Mur1 SINE Alu -2 147 27 1 1610 1538 56 0 25 chr4 134436872 134437072 -21193048 + B2_Mm2 SINE B2 1 195 0 1 1610 1118 95 0 13 chr4 134437089 134437238 -21192882 + B1_Mus2 SINE Alu 1 147 0 1 1610 214 229 0 0 chr4 134437252 134437287 -21192833 - B1_Mus2 SINE Alu -108 39 5 1 1610 285 323 30 10 chr4 134437455 134437555 -21192565 - MIR3 SINE MIR -41 167 66 1 1610 209 270 168 10 chr4 134437576 134437677 -21192443 + MIR SINE MIR 19 135 -127 1 1610 766 246 100 52 chr4 134437740 134438010 -21192110 + B4A SINE B4 10 292 0 1 1610 670 234 190 6 chr4 134438045 134438265 -21191855 - MTD LTR MaLR -1 418 140 1 1610 437 227 11 11 chr4 134438468 134438557 -21191563 - PB1D7 SINE Alu -14 106 18 1 1610 1318 110 16 0 chr4 134438798 134438989 -21191131 + B2_Mm2 SINE B2 2 195 0 1 1610 182 291 160 57 chr4 134439255 134439623 -21190497 - L2 LINE L2 -379 3040 2635 1 1610 216 232 54 0 chr4 134440121 134440177 -21189943 - B3A SINE B2 -131 67 9 1 1610 669 160 9 0 chr4 134440811 134440917 -21189203 + B3 SINE B2 24 130 -86 1 1610 1391 24 9 31 chr4 134441438 134441787 -21188333 + (TTTCC)n Simple_repeat Simple_repeat 1 341 0 1 1610 422 35 35 0 chr4 134441791 134441848 -21188272 - B1_Mm SINE Alu 0 147 89 1 1610 846 135 0 16 chr4 134441849 134441977 -21188143 + B1_Mus1 SINE Alu 23 148 0 1 1610 182 118 29 0 chr4 134441997 134442031 -21188089 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1610 461 233 0 0 chr4 134442041 134442127 -21187993 - RSINE1 SINE B4 -43 122 37 1 1610 798 89 0 0 chr4 134442234 134442346 -21187774 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 1 1610 904 107 0 148 chr4 134442347 134442523 -21187597 - B1_Mur4 SINE Alu 0 150 1 1 1610 765 145 43 0 chr4 134442557 134442674 -21187446 - B3 SINE B2 -86 130 9 1 1610 384 78 0 0 chr4 134442668 134442719 -21187401 - B2_Mm2 SINE B2 -142 53 3 1 1610 537 149 0 0 chr4 134442850 134442937 -21187183 - MTD LTR MaLR 0 419 333 1 1610 2813 169 32 76 chr4 134442947 134443039 -21187081 - RLTR20B3 LTR ERVK -3 574 473 1 1610 405 0 0 0 chr4 134443039 134443084 -21187036 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1610 2813 169 32 76 chr4 134443084 134443468 -21186652 - RLTR20B3 LTR ERVK -105 472 103 1 1610 1375 58 0 17 chr4 134443468 134443627 -21186493 + B2_Mm1t SINE B2 1 158 -35 1 1610 189 0 0 0 chr4 134443627 134443648 -21186472 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1610 1375 58 0 17 chr4 134443648 134443665 -21186455 + B2_Mm1t SINE B2 159 174 -19 1 1610 2813 169 32 76 chr4 134443665 134443776 -21186344 - RLTR20B3 LTR ERVK -475 102 13 1 1610 1127 159 268 11 chr4 134443760 134444021 -21186099 - MTD LTR MaLR -89 330 3 1 1610 241 267 63 78 chr4 134444185 134444327 -21185793 - L2c LINE L2 -192 3195 3056 1 1610 323 293 125 81 chr4 134444678 134444838 -21185282 + MER20 DNA MER1_type 36 202 -17 1 1610 290 299 9 36 chr4 134444841 134444883 -21185237 + MER5A1 DNA MER1_type 1 41 -125 1 1610 568 269 68 97 chr4 134444883 134445253 -21184867 - ORR1E LTR MaLR 0 359 1 1 1610 290 299 9 36 chr4 134445253 134445321 -21184799 + MER5A1 DNA MER1_type 42 108 -58 1 1610 288 0 0 0 chr4 134445321 134445353 -21184767 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1610 210 208 0 0 chr4 134445353 134445401 -21184719 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1610 307 209 15 15 chr4 134445411 134445479 -21184641 - ID2 SINE ID -13 70 3 1 1610 3197 65 15 2 chr4 134445528 134445930 -21184190 - MTB_Mm LTR MaLR 0 407 1 1 1610 1152 49 42 7 chr4 134446437 134446580 -21183540 - B1_Mus1 SINE Alu 0 148 1 1 1610 1239 84 39 11 chr4 134446586 134446767 -21183353 - B2_Mm2 SINE B2 0 195 10 1 1610 438 131 115 137 chr4 134446855 134447011 -21183109 - B1_Mus2 SINE Alu 0 149 1 1 1610 268 238 0 144 chr4 134447093 134447211 -21182909 + MT2B LTR ERVL 164 264 -337 1 1610 699 96 0 37 chr4 134447142 134447250 -21182870 + B1_Mur3 SINE Alu 46 149 0 1 1610 229 233 0 0 chr4 134447644 134447687 -21182433 + ID_B1 SINE B4 161 203 -21 1 1610 1252 41 0 13 chr4 134447762 134447911 -21182209 - B1_Mus2 SINE Alu 0 147 1 1 1610 593 175 0 0 chr4 134448367 134448464 -21181656 - B3 SINE B2 -5 211 115 1 1610 1262 41 0 13 chr4 134448476 134448625 -21181495 - B1_Mus2 SINE Alu 0 147 1 1 1610 1350 66 5 32 chr4 134448657 134448846 -21181274 + B2_Mm2 SINE B2 2 185 -10 1 1610 376 264 102 47 chr4 134448857 134448882 -21181238 + ID_B1 SINE B4 77 210 -14 1 1610 676 157 0 0 chr4 134448882 134448984 -21181136 + B1_Mur1 SINE Alu 34 135 -14 1 1610 1167 43 0 21 chr4 134449037 134449179 -21180941 + B1_Mus1 SINE Alu 5 143 -5 1 1610 340 245 42 21 chr4 134449559 134449655 -21180465 - PB1D7 SINE Alu -22 98 1 1 1610 312 279 51 51 chr4 134449655 134449676 -21180444 - ID_B1 SINE B4 -48 176 60 1 1610 771 128 93 43 chr4 134450042 134450181 -21179939 - B1_Mus1 SINE Alu 0 148 3 1 1610 468 0 0 0 chr4 134450352 134450404 -21179716 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1610 273 233 16 32 chr4 134450662 134450724 -21179396 + L3 LINE CR1 4316 4376 -113 1 1610 217 238 0 0 chr4 134450751 134450814 -21179306 + B1F SINE Alu 1 63 -86 1 1610 387 328 84 39 chr4 134450832 134451010 -21179110 + B3 SINE B2 1 186 -30 1 1610 763 257 13 103 chr4 134451042 134451141 -21178979 + B3 SINE B2 3 92 -124 1 1610 1107 97 107 17 chr4 134451141 134451319 -21178801 - B2_Mm2 SINE B2 -1 194 1 1 1610 763 257 13 103 chr4 134451319 134451453 -21178667 + B3 SINE B2 93 215 -1 1 1610 855 142 57 0 chr4 134451457 134451598 -21178522 + B1_Mur3 SINE Alu 1 149 0 1 1610 186 103 0 0 chr4 134451608 134451637 -21178483 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1610 528 126 423 10 chr4 134451714 134451818 -21178302 + B1_Mus2 SINE Alu 1 147 0 1 1610 1193 49 14 0 chr4 134453930 134454074 -21176046 - B1_Mm SINE Alu 0 147 2 1 1610 507 297 7 7 chr4 134454792 134454941 -21175179 - B1F SINE Alu 0 149 1 1 1610 279 275 73 112 chr4 134454975 134455180 -21174940 + B3A SINE B2 2 198 0 1 1610 1034 47 6 86 chr4 134455183 134455343 -21174777 + B1_Mm SINE Alu 6 145 -2 1 1610 24 0 0 0 chr4 134455350 134455374 -21174746 + AT_rich Low_complexity Low_complexity 1 24 0 1 1610 2430 165 22 7 chr4 134455455 134455859 -21174261 + MTC LTR MaLR 9 418 -3 1 1610 367 263 63 0 chr4 134456017 134456112 -21174008 + PB1 SINE Alu 2 102 -25 1 1610 1176 90 17 19 chr4 134456126 134456317 -21173803 + B2_Mm2 SINE B2 25 211 -5 1 1610 218 333 44 44 chr4 134456427 134456518 -21173602 + PB1D10 SINE Alu 7 97 -20 1 1610 486 33 0 0 chr4 134456522 134456582 -21173538 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1610 445 79 19 0 chr4 134456720 134456794 -21173326 + B1_Mus2 SINE Alu 62 137 -12 1 1610 306 0 0 0 chr4 134456796 134456830 -21173290 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1610 201 360 36 0 chr4 134457317 134457428 -21172692 - L2 LINE L2 -653 2766 2652 1 1610 432 196 120 0 chr4 134457722 134457814 -21172306 + B1_Mur4 SINE Alu 3 105 -45 1 1610 195 42 0 0 chr4 134457836 134457860 -21172260 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 1 1610 264 279 21 31 chr4 134458118 134458214 -21171906 + ID_B1 SINE B4 81 175 -49 1 1610 303 266 51 68 chr4 134458223 134458340 -21171780 + PB1D10 SINE Alu 3 117 0 1 1610 1026 109 0 7 chr4 134458351 134458490 -21171630 + B1_Mus1 SINE Alu 2 139 -9 1 1610 185 0 0 39 chr4 134458490 134458516 -21171604 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 1 1610 201 74 0 0 chr4 134458565 134458592 -21171528 + (TTTTC)n Simple_repeat Simple_repeat 1 27 0 1 1610 817 154 15 0 chr4 134458592 134458728 -21171392 - B1_Mus2 SINE Alu -1 146 9 1 1610 570 67 0 0 chr4 134459316 134459391 -21170729 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1610 243 88 0 0 chr4 134459444 134459478 -21170642 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1610 376 227 62 26 chr4 134459722 134459835 -21170285 + PB1D10 SINE Alu 1 117 0 1 1610 545 291 8 0 chr4 134459847 134459974 -21170146 + RSINE1 SINE B4 36 163 -2 1 1610 348 270 132 73 chr4 134459950 134460086 -21170034 + B1F SINE Alu 6 149 0 1 1610 337 252 124 131 chr4 134460166 134460303 -21169817 + ID_B1 SINE B4 84 219 -5 1 1610 298 291 1 12 chr4 134460307 134460401 -21169719 + B4 SINE B4 1 94 -198 1 1610 523 242 203 22 chr4 134460403 134460585 -21169535 + B3 SINE B2 2 216 0 1 1610 1042 55 0 115 chr4 134460593 134460758 -21169362 + B1_Mus1 SINE Alu 2 147 -1 1 1610 669 188 156 0 chr4 134460822 134460950 -21169170 + B1_Mur1 SINE Alu 1 148 -1 1 1610 297 346 65 14 chr4 134461504 134461642 -21168478 + MER5A DNA MER1_type 22 166 -23 1 1610 649 145 117 31 chr4 134461844 134461972 -21168148 + B1_Mur4 SINE Alu 2 140 -10 1 1610 207 0 0 0 chr4 134461972 134461995 -21168125 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1610 1167 75 0 0 chr4 134461997 134462143 -21167977 + B1_Mus1 SINE Alu 1 146 -2 1 1610 234 62 0 0 chr4 134462143 134462175 -21167945 + (CAAG)n Simple_repeat Simple_repeat 2 33 0 1 1610 241 300 126 9 chr4 134462972 134463083 -21167037 + ID_B1 SINE B4 47 170 -54 1 1610 270 164 176 15 chr4 134463030 134463098 -21167022 + PB1D10 SINE Alu 30 108 -9 1 1610 402 115 0 0 chr4 134463570 134463631 -21166489 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1610 348 206 64 57 chr4 134463954 134464083 -21166037 + PB1D10 SINE Alu 7 130 -17 1 1610 344 119 15 18 chr4 134465011 134465072 -21165048 - B1F SINE Alu -31 96 29 1 1610 708 236 98 10 chr4 134465098 134465291 -21164829 - B3 SINE B2 -6 210 1 1 1610 376 268 46 92 chr4 134465297 134465317 -21164803 - B4 SINE B4 -69 223 142 1 1610 465 218 25 76 chr4 134465317 134465436 -21164684 - B1F1 SINE Alu -34 115 3 1 1610 376 268 46 92 chr4 134465436 134465449 -21164671 - B4 SINE B4 -69 141 79 1 1610 1497 68 16 0 chr4 134465800 134465991 -21164129 - B2_Mm2 SINE B2 0 195 2 1 1610 782 161 32 0 chr4 134466030 134466154 -21163966 - B3 SINE B2 -88 128 1 1 1610 324 0 0 0 chr4 134466239 134466275 -21163845 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1610 1239 50 0 42 chr4 134466275 134466442 -21163678 - B2_Mm2 SINE B2 -34 161 2 1 1610 1078 112 0 0 chr4 134466496 134466639 -21163481 + B1_Mus2 SINE Alu 5 147 0 1 1610 1237 106 26 11 chr4 134466656 134466847 -21163273 + B2_Mm2 SINE B2 2 195 0 1 1610 291 233 41 0 chr4 134466923 134466996 -21163124 + ID4 SINE ID 2 77 -6 1 1610 3523 32 0 132 chr4 134467023 134467525 -21162595 + RLTR10C LTR ERVK 1 436 0 1 1610 454 279 73 18 chr4 134467736 134467887 -21162233 + ID_B1 SINE B4 51 202 -22 1 1610 264 30 0 0 chr4 134467887 134467920 -21162200 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 1 1610 454 279 73 18 chr4 134467920 134467932 -21162188 + ID_B1 SINE B4 203 223 -1 1 1610 231 125 0 0 chr4 134468055 134468095 -21162025 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1610 1109 62 0 27 chr4 134468095 134468245 -21161875 - B1_Mm SINE Alu 0 147 2 1 1610 893 144 29 0 chr4 134468256 134468395 -21161725 - B1_Mur2 SINE Alu -5 144 2 1 1610 1253 119 11 0 chr4 134468610 134468787 -21161333 + B2_Mm1t SINE B2 1 179 -14 1 1610 364 97 316 17 chr4 134468805 134468919 -21161201 + B2_Mm2 SINE B2 47 194 -1 1 1610 505 193 17 42 chr4 134469333 134469452 -21160668 + B1F SINE Alu 3 118 -31 1 1610 778 139 159 24 chr4 134469466 134469636 -21160484 + B2_Mm2 SINE B2 1 193 -2 1 1610 539 266 0 86 chr4 134471161 134471301 -21158819 - RSINE1 SINE B4 -35 130 3 1 1610 841 226 79 0 chr4 134471619 134471809 -21158311 - B3 SINE B2 -8 208 4 1 1610 346 100 0 20 chr4 134471909 134471960 -21158160 - HAL1-3A_ME LINE L1 -832 2026 1977 1 1610 702 189 0 30 chr4 134472090 134472221 -21157899 - B1_Mus1 SINE Alu 0 148 22 1 1610 186 43 0 0 chr4 134472224 134472247 -21157873 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 1610 1476 255 52 9 chr4 134472534 134472878 -21157242 - ORR1D2 LTR MaLR 0 370 12 1 1610 295 254 88 35 chr4 134473012 134473126 -21156994 + RMER5 LTR ERV1 90 209 -325 1 1610 940 55 109 8 chr4 134473450 134473578 -21156542 - B1_Mm SINE Alu -6 141 1 1 1610 794 189 0 33 chr4 134473744 134473897 -21156223 + B1_Mur4 SINE Alu 3 150 0 1 1610 212 129 0 0 chr4 134473904 134473935 -21156185 + B3 SINE B2 1 31 -185 1 1610 975 85 0 0 chr4 134473951 134474080 -21156040 + B2_Mm2 SINE B2 2 130 -65 1 1610 180 0 0 0 chr4 134474093 134474113 -21156007 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1610 1954 201 23 59 chr4 134474360 134474836 -21155284 + RMER6B LTR ERVK 1 459 -2 1 1610 1146 69 21 0 chr4 134474849 134474994 -21155126 + B1_Mus1 SINE Alu 1 148 0 1 1610 287 135 42 0 chr4 134474997 134475093 -21155027 + A-rich Low_complexity Low_complexity 3 102 0 1 1610 867 151 13 27 chr4 134475164 134475314 -21154806 + B1_Mur4 SINE Alu 1 148 -2 1 1610 200 208 0 0 chr4 134475315 134475363 -21154757 + A-rich Low_complexity Low_complexity 1 48 0 1 1610 669 246 24 0 chr4 134475363 134475489 -21154631 - B3 SINE B2 -57 159 31 1 1610 570 180 0 11 chr4 134475493 134475613 -21154507 - B1_Mur4 SINE Alu -5 145 30 1 1610 433 235 209 0 chr4 134475978 134476093 -21154027 - ID_B1 SINE B4 -1 223 85 1 1610 250 183 123 27 chr4 134476317 134476390 -21153730 - B4A SINE B4 -119 173 94 1 1610 400 216 74 95 chr4 134476451 134476599 -21153521 - RLTR23 LTR ERV1 0 430 286 1 1610 1386 51 39 17 chr4 134476779 134476959 -21153161 - B2_Mm2 SINE B2 -9 186 3 1 1610 249 219 236 29 chr4 134477185 134477210 -21152910 - B3 SINE B2 -6 210 185 1 1610 1885 162 41 74 chr4 134477210 134477266 -21152854 - RLTR14 LTR ERV1 0 382 332 1 1610 1061 49 0 95 chr4 134477266 134477424 -21152696 - B1_Mm SINE Alu -2 145 3 1 1610 1885 162 41 74 chr4 134477424 134477761 -21152359 - RLTR14 LTR ERV1 -51 331 2 1 1610 249 219 236 29 chr4 134477761 134477909 -21152211 - B3 SINE B2 -32 184 2 1 1610 348 191 152 120 chr4 134477954 134478042 -21152078 - RSINE1 SINE B4 -33 132 40 1 1610 1431 104 5 0 chr4 134478042 134478234 -21151886 - B2_Mm1a SINE B2 0 193 1 1 1610 348 191 152 120 chr4 134478234 134478270 -21151850 - RSINE1 SINE B4 -126 39 4 1 1610 340 224 29 39 chr4 134478570 134478672 -21151448 + B3A SINE B2 2 102 -96 1 1610 360 0 0 0 chr4 134478719 134478759 -21151361 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1610 219 69 0 0 chr4 134479103 134479132 -21150988 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 1 1610 424 234 75 0 chr4 134479144 134479251 -21150869 + PB1D9 SINE Alu 1 115 -5 1 1611 416 289 33 0 chr4 134482076 134482197 -21147923 + ID_B1 SINE B4 2 126 -98 1 1611 22 35 0 0 chr4 134482585 134482614 -21147506 + AT_rich Low_complexity Low_complexity 1 29 0 1 1611 313 175 296 10 chr4 134483469 134483567 -21146553 + B3 SINE B2 86 211 -5 1 1611 365 369 18 0 chr4 134483591 134483702 -21146418 + B1_Mur2 SINE Alu 1 113 -36 1 1611 242 231 0 19 chr4 134484322 134484375 -21145745 + ID SINE ID 3 54 -170 1 1611 505 273 41 27 chr4 134484465 134484612 -21145508 - B1_Mur2 SINE Alu 0 149 1 1 1611 229 281 0 23 chr4 134484809 134484877 -21145243 - B1_Mur3 SINE Alu -80 67 3 1 1611 1175 55 0 14 chr4 134484892 134485039 -21145081 - B1_Mus2 SINE Alu 0 147 3 1 1611 318 280 40 10 chr4 134485096 134485197 -21144923 + ID_B1 SINE B4 64 167 -57 1 1611 373 224 181 0 chr4 134485198 134485314 -21144806 + B1_Mm SINE Alu 10 146 -1 1 1611 421 206 119 18 chr4 134485465 134485574 -21144546 + B3A SINE B2 10 129 -69 1 1611 647 197 190 6 chr4 134485597 134485776 -21144344 + B3 SINE B2 3 214 -2 1 1611 279 79 0 0 chr4 134485933 134485971 -21144149 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1 1611 1208 48 0 26 chr4 134485983 134486134 -21143986 - B1_Mus1 SINE Alu 0 148 2 1 1611 348 274 85 46 chr4 134486238 134486257 -21143863 - ID_B1 SINE B4 -9 215 82 1 1611 383 266 100 9 chr4 134486257 134486367 -21143753 - B1F1 SINE Alu -29 120 1 1 1611 27 0 0 0 chr4 134486719 134486746 -21143374 + GC_rich Low_complexity Low_complexity 1 27 0 1 1611 342 151 115 25 chr4 134487807 134487949 -21142171 - B2_Mm2 SINE B2 0 195 2 1 1611 1128 133 46 0 chr4 134487949 134488122 -21141998 - B2_Mm2 SINE B2 -14 181 1 1 1611 867 64 0 74 chr4 134488124 134488259 -21141861 - B1_Mus1 SINE Alu 0 148 24 1 1611 499 187 30 112 chr4 134488259 134488293 -21141827 - ID_B1 SINE B4 0 224 70 1 1611 546 222 24 84 chr4 134488297 134488464 -21141656 + RSINE1 SINE B4 3 159 -6 1 1611 563 273 45 13 chr4 134488490 134488646 -21141474 - RSINE1 SINE B4 -2 163 3 1 1611 587 158 316 0 chr4 134488769 134488908 -21141212 - URR1A DNA MER1_type -43 183 1 1 1611 734 326 46 32 chr4 134488916 134489201 -21140919 + B4A SINE B4 4 292 0 1 1611 480 243 66 46 chr4 134489874 134490025 -21140095 + RSINE1 SINE B4 4 157 -8 1 1611 319 333 65 0 chr4 134490516 134490639 -21139481 - RSINE1 SINE B4 -31 134 4 1 1611 481 228 0 11 chr4 134490699 134490792 -21139328 + PB1D7 SINE Alu 8 99 -21 1 1611 319 200 149 0 chr4 134491116 134491215 -21138905 - B1F1 SINE Alu -2 115 1 1 1611 216 280 79 61 chr4 134491215 134491247 -21138873 - ID_B1 SINE B4 -134 90 57 1 1611 450 267 26 8 chr4 134491469 134491586 -21138534 - PB1D7 SINE Alu 0 120 2 1 1611 369 273 20 0 chr4 134492220 134492370 -21137750 + CT-rich Low_complexity Low_complexity 2 154 0 1 1611 1208 55 14 0 chr4 134492370 134492515 -21137605 - B1_Mm SINE Alu 0 147 1 1 1611 747 133 138 13 chr4 134493991 134494143 -21135977 + RMER4B LTR ERVK 1 171 -414 1 1611 427 272 132 0 chr4 134494213 134494327 -21135793 - ID_B1 SINE B4 -24 200 72 1 1611 468 0 0 0 chr4 134494374 134494426 -21135694 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1611 198 71 0 0 chr4 134494565 134494593 -21135527 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1611 235 316 20 10 chr4 134494642 134494741 -21135379 - Lx8 LINE L1 -2 7471 7372 1 1611 476 230 68 88 chr4 134494744 134494892 -21135228 + B3A SINE B2 54 198 0 1 1611 1217 68 0 0 chr4 134494898 134495045 -21135075 + B1_Mus1 SINE Alu 2 148 0 1 1611 261 0 0 0 chr4 134495065 134495094 -21135026 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1611 1737 16 0 0 chr4 134495187 134495379 -21134741 - B2_Mm1a SINE B2 0 193 2 1 1611 1691 267 30 34 chr4 134495412 134496004 -21134116 + L1MB7 LINE L1 5586 6175 -9 1 1611 279 0 0 0 chr4 134496018 134496049 -21134071 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1611 233 183 67 0 chr4 134496653 134496713 -21133407 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 1 1611 431 216 0 6 chr4 134496722 134496885 -21133235 + GA-rich Low_complexity Low_complexity 1 162 0 1 1611 510 144 0 65 chr4 134496918 134497103 -21133017 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 1 1611 906 259 72 0 chr4 134497148 134497341 -21132779 - ID_B1 SINE B4 -2 222 16 1 1611 404 200 0 8 chr4 134497554 134497675 -21132445 + CT-rich Low_complexity Low_complexity 2 121 0 1 1611 626 221 25 0 chr4 134497675 134497797 -21132323 - B1_Mur1 SINE Alu -22 127 3 1 1611 496 181 21 21 chr4 134497806 134497902 -21132218 - B1F SINE Alu -7 142 47 1 1611 227 259 11 66 chr4 134497824 134497915 -21132205 - RLTR25B LTR ERVK -507 521 436 1 1611 390 269 57 102 chr4 134497986 134498098 -21132022 + RSINE1 SINE B4 4 118 -47 1 1611 3369 45 0 5 chr4 134498098 134498496 -21131624 - MTA_Mm LTR MaLR 0 396 1 1 1611 390 269 57 102 chr4 134498496 134498540 -21131580 + RSINE1 SINE B4 119 153 -12 1 1611 405 0 0 0 chr4 134498541 134498586 -21131534 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1611 360 265 84 0 chr4 134498608 134498691 -21131429 + B1F1 SINE Alu 8 97 -52 1 1611 1326 80 17 0 chr4 134499204 134499380 -21130740 - B2_Mm2 SINE B2 -15 180 2 1 1611 576 298 31 68 chr4 134500575 134500588 -21129532 - B4A SINE B4 -11 281 271 1 1611 216 0 0 0 chr4 134500588 134500612 -21129508 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1611 576 298 31 68 chr4 134500612 134500890 -21129230 - B4A SINE B4 -22 270 1 1 1611 970 210 44 40 chr4 134500890 134501121 -21128999 - B4 SINE B4 -60 232 1 3 1611 866 254 10 14 chr4 134501336 134501544 -21128576 - ID_B1 SINE B4 -13 211 5 4 1611 217 325 63 24 chr4 134502074 134502200 -21127920 + MER5A DNA MER1_type 3 133 -56 5 1611 423 236 45 0 chr4 134502438 134502527 -21127593 + MER58A DNA MER1_type 26 118 -106 6 1611 464 201 49 92 chr4 134502647 134502789 -21127331 + MT2B LTR ERVL 122 257 -344 7 1611 1075 49 0 0 chr4 134502692 134502834 -21127286 + B1_Mus2 SINE Alu 6 147 0 8 1611 330 278 97 55 chr4 134502869 134503086 -21127034 + L1MC5 LINE L1 7527 7752 -209 9 1611 28 38 0 19 chr4 134503086 134503125 -21126995 + AT_rich Low_complexity Low_complexity 1 39 0 1 1611 1073 83 7 20 chr4 134503125 134503272 -21126848 + B1_Mus1 SINE Alu 3 147 -1 1 1611 28 38 0 19 chr4 134503272 134503285 -21126835 + AT_rich Low_complexity Low_complexity 1 13 0 1 1611 420 189 184 31 chr4 134503344 134503442 -21126678 + PB1D10 SINE Alu 5 117 0 1 1611 30 0 0 0 chr4 134503620 134503650 -21126470 + AT_rich Low_complexity Low_complexity 1 30 0 1 1611 1438 74 10 31 chr4 134503664 134503860 -21126260 - B2_Mm2 SINE B2 -3 192 1 1 1611 675 0 0 0 chr4 134503864 134503939 -21126181 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1611 859 75 158 0 chr4 134503939 134504059 -21126061 - B1_Mus1 SINE Alu -9 139 1 1 1611 843 169 246 17 chr4 134504077 134504252 -21125868 - B3 SINE B2 0 216 2 1 1611 1434 73 15 55 chr4 134504263 134504465 -21125655 - B2_Mm2 SINE B2 0 195 2 1 1611 638 47 12 0 chr4 134504586 134504672 -21125448 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 1611 228 300 0 0 chr4 134504678 134504752 -21125368 - ID4 SINE ID -9 74 1 2 1611 229 264 38 0 chr4 134504709 134504762 -21125358 - ZP3AR Satellite Satellite -127 85 31 2 1611 366 290 96 8 chr4 134504753 134504878 -21125242 + B4A SINE B4 6 141 -151 2 1611 966 125 21 0 chr4 134505079 134505223 -21124897 + B1_Mus1 SINE Alu 2 148 0 2 1611 369 306 63 24 chr4 134505287 134505414 -21124706 - RSINE1 SINE B4 0 165 34 2 1611 1431 86 16 0 chr4 134506123 134506310 -21123810 - B2_Mm2 SINE B2 -4 191 2 2 1611 759 270 22 54 chr4 134507164 134507387 -21122733 - B3 SINE B2 0 216 1 2 1611 511 235 0 12 chr4 134508307 134508475 -21121645 + (TG)n Simple_repeat Simple_repeat 1 166 0 2 1611 318 264 0 20 chr4 134508556 134508703 -21121417 + (TG)n Simple_repeat Simple_repeat 1 144 0 2 1611 259 278 69 0 chr4 134508729 134508801 -21121319 - B4A SINE B4 0 292 216 3 1611 266 217 50 0 chr4 134508884 134508944 -21121176 - B3A SINE B2 -134 64 2 3 1611 519 267 162 17 chr4 134508944 134509107 -21121013 - B4A SINE B4 -58 234 46 3 1611 524 206 114 93 chr4 134509105 134509245 -21120875 - B3 SINE B2 -15 201 54 3 1611 405 136 0 0 chr4 134509251 134509317 -21120803 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 3 1611 883 59 0 0 chr4 134509317 134509436 -21120684 - B1_Mm SINE Alu 0 147 29 3 1611 432 286 0 0 chr4 134509483 134509588 -21120532 + PB1D9 SINE Alu 10 114 -6 3 1611 411 210 0 0 chr4 134509611 134509711 -21120409 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1611 477 237 104 97 chr4 134509711 134509865 -21120255 - RSINE1 SINE B4 0 165 11 3 1611 708 292 48 0 chr4 134510828 134511037 -21119083 + B4A SINE B4 12 230 -62 3 1611 232 394 40 0 chr4 134511037 134511136 -21118984 + Lx8 LINE L1 7063 7165 -308 4 1611 579 29 0 0 chr4 134511172 134511241 -21118879 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1611 493 145 0 0 chr4 134511451 134511527 -21118593 + B1_Mur3 SINE Alu 1 76 -73 4 1611 398 210 0 8 chr4 134511572 134511697 -21118423 + (CA)n Simple_repeat Simple_repeat 2 125 0 4 1611 784 68 248 0 chr4 134512622 134512739 -21117381 - B1_Mm SINE Alu 0 147 2 4 1611 30 27 0 0 chr4 134512750 134512787 -21117333 + AT_rich Low_complexity Low_complexity 1 37 0 4 1611 724 193 0 0 chr4 134512787 134512906 -21117214 - PB1D9 SINE Alu 0 120 2 4 1611 1530 58 16 0 chr4 134512909 134513100 -21117020 - B2_Mm2 SINE B2 -1 194 1 4 1611 1071 213 19 19 chr4 134513115 134513330 -21116790 - B3 SINE B2 0 216 2 4 1611 617 295 75 0 chr4 134513330 134513503 -21116617 - ID_B1 SINE B4 -34 190 5 4 1611 706 238 42 0 chr4 134513818 134513961 -21116159 + RSINE1 SINE B4 3 151 -14 5 1611 883 232 63 15 chr4 134514027 134514233 -21115887 - B3 SINE B2 0 216 1 5 1611 626 182 9 35 chr4 134514235 134514349 -21115771 - PB1D9 SINE Alu -8 112 2 5 1611 260 367 15 15 chr4 134514934 134515064 -21115056 + MIR SINE MIR 99 228 -34 5 1611 927 138 0 0 chr4 134515212 134515364 -21114756 + (TCC)n Simple_repeat Simple_repeat 3 154 0 5 1611 381 261 34 0 chr4 134515364 134515452 -21114668 - ID_B1 SINE B4 -11 213 123 5 1611 1664 26 16 0 chr4 134515509 134515698 -21114422 - B2_Mm1a SINE B2 0 193 2 5 1611 1006 150 183 0 chr4 134515703 134515883 -21114237 - B3 SINE B2 0 216 4 5 1611 352 315 36 86 chr4 134516126 134516180 -21113940 + ID_B1 SINE B4 83 129 -95 5 1611 1181 29 0 7 chr4 134516180 134516317 -21113803 + B1_Mm SINE Alu 1 136 -11 5 1611 234 0 0 0 chr4 134516317 134516343 -21113777 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 6 1611 195 42 0 0 chr4 134516343 134516367 -21113753 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 6 1611 352 315 36 86 chr4 134516367 134516449 -21113671 + ID_B1 SINE B4 130 212 -12 5 1611 188 163 0 23 chr4 134516449 134516493 -21113627 + (CCA)n Simple_repeat Simple_repeat 2 44 0 6 1611 621 72 0 0 chr4 134516573 134516656 -21113464 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1611 691 222 14 20 chr4 134516656 134516803 -21113317 - RSINE1 SINE B4 -16 149 4 6 1611 365 338 138 5 chr4 134516997 134517193 -21112927 + MER63D DNA AcHobo 32 253 -808 6 1611 430 106 0 0 chr4 134517424 134517490 -21112630 - B1_Mur1 SINE Alu -6 143 78 6 1611 437 269 202 0 chr4 134517699 134517818 -21112302 + RSINE1 SINE B4 1 143 -22 6 1611 1299 76 27 16 chr4 134517867 134518022 -21112098 + B2_Mm1t SINE B2 1 160 -33 6 1611 216 0 0 0 chr4 134518022 134518046 -21112074 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 6 1611 1299 76 27 16 chr4 134518046 134518077 -21112043 + B2_Mm1t SINE B2 161 189 -4 6 1611 703 336 44 37 chr4 134518118 134518548 -21111572 - L1ME2 LINE L1 -75 6089 5657 7 1611 422 283 0 0 chr4 134518548 134518647 -21111473 - B1_Mur3 SINE Alu -49 100 2 7 1611 484 250 125 43 chr4 134518656 134518840 -21111280 - B3A SINE B2 0 216 18 7 1611 859 158 6 6 chr4 134519644 134519810 -21110310 + CT-rich Low_complexity Low_complexity 3 168 0 7 1611 270 0 0 0 chr4 134519812 134519842 -21110278 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 1611 762 152 73 29 chr4 134519845 134519981 -21110139 - B1_Mur3 SINE Alu -7 142 1 7 1611 314 258 69 40 chr4 134520320 134520421 -21109699 - RSINE1 SINE B4 -61 104 1 7 1611 348 64 0 0 chr4 134520547 134520594 -21109526 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1611 268 260 22 57 chr4 134520737 134520836 -21109284 - MIR SINE MIR -79 189 97 7 1611 204 67 0 0 chr4 134521553 134521583 -21108537 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1611 495 284 99 0 chr4 134521945 134522086 -21108034 + MIR SINE MIR 16 170 -92 8 1611 2922 123 175 86 chr4 134522403 134522962 -21107158 - RMER19C LTR ERVK 0 611 3 8 1611 577 288 44 25 chr4 134522962 134523165 -21106955 - ID_B1 SINE B4 -16 208 2 8 1611 735 253 34 7 chr4 134523272 134523531 -21106589 - L1ME1 LINE L1 -2138 5857 5580 8 1611 766 183 27 40 chr4 134523534 134523682 -21106438 + B1_Mus1 SINE Alu 3 148 0 8 1611 309 68 0 0 chr4 134523700 134523744 -21106376 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 8 1611 245 232 192 0 chr4 134523860 134523959 -21106161 - MLT1A1 LTR MaLR 0 408 291 8 1611 227 279 24 48 chr4 134525652 134525735 -21104385 + 4.5SRNA scRNA scRNA 1 81 -13 8 1611 447 238 95 0 chr4 134525661 134525766 -21104354 + PB1 SINE Alu 11 125 -2 8 1611 220 311 203 8 chr4 134525766 134525784 -21104336 + B4A SINE B4 96 242 -50 8 1611 1020 336 32 0 chr4 134525976 134526321 -21103799 + MLT2C1 LTR ERVL 30 385 -12 9 1611 1196 132 3 17 chr4 134526393 134526747 -21103373 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 9 1611 338 274 37 105 chr4 134527138 134527285 -21102835 - MTEa LTR MaLR -71 308 172 9 1611 503 270 26 26 chr4 134527337 134527489 -21102631 - MTEa LTR MaLR -196 183 32 9 1611 234 354 31 0 chr4 134527540 134527636 -21102484 - L2b LINE L2 -9 3366 3268 9 1611 352 213 26 26 chr4 134527665 134527742 -21102378 - B4 SINE B4 -212 80 4 9 1611 726 240 12 21 chr4 134528439 134528616 -21101504 - ID_B1 SINE B4 -38 254 82 9 1611 355 236 56 0 chr4 134528685 134528774 -21101346 + PB1D10 SINE Alu 24 117 0 9 1611 490 302 0 6 chr4 134528780 134528960 -21101160 + GA-rich Low_complexity Low_complexity 2 180 0 9 1611 445 301 0 0 chr4 134529010 134529350 -21100770 + GA-rich Low_complexity Low_complexity 1 340 0 9 1611 4067 133 119 66 chr4 134529485 134529903 -21100217 + RMER19B LTR ERVK 1 416 -486 9 1611 645 38 0 0 chr4 134529903 134529983 -21100137 + (GA)n Simple_repeat Simple_repeat 2 81 0 9 1611 4067 133 119 66 chr4 134529983 134530398 -21099722 + RMER19B LTR ERVK 417 878 -24 9 1611 1123 71 0 0 chr4 134530406 134530546 -21099574 + B1_Mus2 SINE Alu 5 144 -3 1 1611 196 330 19 67 chr4 134531731 134531835 -21098285 + L2b LINE L2 2969 3067 -308 1 1611 1048 99 18 21 chr4 134531946 134532288 -21097832 + (TG)n Simple_repeat Simple_repeat 1 340 0 1 1611 863 281 71 4 chr4 134532321 134532575 -21097545 - B4A SINE B4 -21 271 1 1 1611 424 307 87 15 chr4 134533029 134533224 -21096896 - L1MEd LINE L1 -1894 4252 4044 1 1611 230 216 0 43 chr4 134533227 134533319 -21096801 - MER53 DNA hAT -65 128 41 1 1611 591 200 32 8 chr4 134533420 134533546 -21096574 + B1F SINE Alu 13 141 -8 1 1611 835 177 229 0 chr4 134533564 134533739 -21096381 + B3 SINE B2 2 216 0 1 1611 261 242 29 29 chr4 134533768 134533836 -21096284 + ID4_ SINE ID 5 72 -11 1 1611 383 215 0 8 chr4 134533838 134533960 -21096160 + (CA)n Simple_repeat Simple_repeat 2 122 0 1 1611 510 183 0 0 chr4 134533992 134534112 -21096008 + (CA)n Simple_repeat Simple_repeat 2 121 0 1 1611 654 229 25 23 chr4 134534194 134534376 -21095744 + B3 SINE B2 9 194 -1 1 1611 720 207 41 0 chr4 134534573 134534718 -21095402 - RSINE1 SINE B4 -11 154 4 1 1611 543 219 35 17 chr4 134534773 134534889 -21095231 + MTE2b LTR MaLR 11 128 -251 1 1611 530 339 29 16 chr4 134534979 134535222 -21094898 - L1MEd LINE L1 -5427 709 464 1 1611 348 83 0 0 chr4 134535783 134535831 -21094289 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1 1611 385 321 48 21 chr4 134535939 134536127 -21093993 - MIR SINE MIR -48 214 22 1 1611 369 109 0 0 chr4 134536128 134536192 -21093928 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 1 1611 237 262 167 48 chr4 134536222 134536306 -21093814 - PB1D10 SINE Alu -15 102 9 1 1611 477 0 0 0 chr4 134536714 134536767 -21093353 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1611 180 0 0 0 chr4 134536767 134536786 -21093334 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1611 334 241 24 12 chr4 134536961 134537045 -21093075 - RSINE1 SINE B4 -80 85 1 1 1611 399 41 0 0 chr4 134537045 134537094 -21093026 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 1 1611 410 242 225 0 chr4 134537096 134537216 -21092904 - ID_B1 SINE B4 -19 205 59 1 1611 267 200 0 20 chr4 134538092 134538143 -21091977 + B4A SINE B4 23 72 -220 1 1611 483 138 0 0 chr4 134538144 134538231 -21091889 + ORR1A2 LTR MaLR 2 88 -239 1 1611 1955 101 43 7 chr4 134538220 134538580 -21091540 + ORR1A2 LTR MaLR 8 394 0 1 1611 660 282 46 0 chr4 134538580 134538722 -21091398 + B4A SINE B4 63 213 -79 1 1611 262 263 26 26 chr4 134538761 134538839 -21091281 + (CATG)n Simple_repeat Simple_repeat 1 78 0 1 1611 22 0 0 0 chr4 134539573 134539595 -21090525 + AT_rich Low_complexity Low_complexity 1 22 0 1 1611 209 33 33 0 chr4 134540170 134540200 -21089920 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 1611 217 328 0 0 chr4 134540261 134540328 -21089792 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1611 903 261 102 30 chr4 134540335 134540600 -21089520 - B4 SINE B4 -6 286 3 1 1611 861 225 50 0 chr4 134540617 134540799 -21089321 - B3 SINE B2 -25 191 1 1 1611 288 130 0 0 chr4 134540800 134540846 -21089274 + (TCC)n Simple_repeat Simple_repeat 3 48 0 1 1611 952 238 49 5 chr4 134540889 134541092 -21089028 + B3 SINE B2 5 216 0 1 1611 240 299 52 0 chr4 134541121 134541198 -21088922 + ID4 SINE ID 1 81 -2 1 1611 352 289 31 44 chr4 134541204 134541363 -21088757 - L1MD1 LINE L1 -19 6223 6067 1 1611 218 255 0 0 chr4 134541400 134541447 -21088673 - RSINE1 SINE B4 -115 50 4 1 1611 278 275 75 0 chr4 134541449 134541529 -21088591 - ID_B1 SINE B4 -66 158 73 1 1611 288 312 11 0 chr4 134542581 134542674 -21087446 - B4A SINE B4 -2 290 197 1 1611 1212 68 0 0 chr4 134542705 134542852 -21087268 - B1_Mus1 SINE Alu 0 148 2 1 1611 552 211 37 0 chr4 134542956 134543065 -21087055 - PB1D7 SINE Alu -7 113 1 1 1611 222 161 88 18 chr4 134543296 134543353 -21086767 + MIRc SINE MIR 96 156 -112 1 1611 252 0 0 0 chr4 134543437 134543465 -21086655 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1611 210 323 0 0 chr4 134543507 134543572 -21086548 - B4A SINE B4 -227 65 1 1 1611 253 311 115 10 chr4 134543668 134543772 -21086348 - MIRb SINE MIR -117 151 37 1 1611 1252 122 21 21 chr4 134544682 134544875 -21085245 + B2_Mm2 SINE B2 1 193 -2 1 1611 464 324 105 48 chr4 134546933 134547267 -21082853 + ORR1D2 LTR MaLR 18 370 0 1 1611 1817 211 147 35 chr4 134547444 134547590 -21082530 + RMER15 LTR ERVL 1 142 -433 1 1611 402 21 0 0 chr4 134547590 134547637 -21082483 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1611 1817 211 147 35 chr4 134547637 134548006 -21082114 + RMER15 LTR ERVL 143 574 -1 1 1611 226 304 69 35 chr4 134548018 134548134 -21081986 - MIR3 SINE MIR -74 134 15 1 1611 278 288 41 98 chr4 134548146 134548269 -21081851 + RMER15 LTR ERVL 14 129 -446 1 1611 881 257 70 46 chr4 134548291 134548593 -21081527 + RMER15 LTR ERVL 267 575 0 1 1611 317 282 14 43 chr4 134548695 134548835 -21081285 + MIRm SINE MIR 44 178 -90 1 1611 472 218 0 7 chr4 134549207 134549499 -21080621 + (CAG)n Simple_repeat Simple_repeat 1 289 0 1 1611 221 163 0 0 chr4 134549499 134549542 -21080578 + GA-rich Low_complexity Low_complexity 2 44 0 1 1611 276 30 0 0 chr4 134550818 134550851 -21079269 + (CCA)n Simple_repeat Simple_repeat 2 34 0 1 1611 252 0 0 0 chr4 134551348 134551376 -21078744 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1611 342 173 0 0 chr4 134551548 134551623 -21078497 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1611 1182 240 7 48 chr4 134551883 134552172 -21077948 + B4 SINE B4 1 277 -15 1 1611 315 104 0 0 chr4 134552214 134552262 -21077858 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1611 190 151 57 0 chr4 134552645 134552698 -21077422 + G-rich Low_complexity Low_complexity 3 58 0 1 1611 307 286 50 10 chr4 134552885 134552984 -21077136 + Looper DNA PiggyBac 47 149 -1409 1 1611 868 132 7 0 chr4 134553010 134553146 -21076974 - B1_Mur2 SINE Alu 0 149 13 1 1611 260 264 71 26 chr4 134553194 134553307 -21076813 + B1F1 SINE Alu 6 123 -26 1 1611 646 280 102 12 chr4 134553330 134553576 -21076544 + Looper DNA PiggyBac 169 436 -1122 1 1611 539 310 150 34 chr4 134553589 134553943 -21076177 + MLT1D LTR MaLR 6 400 -105 1 1611 1029 223 67 118 chr4 134553943 134554297 -21075823 - ORR1E LTR MaLR -1 378 1 1 1611 335 113 0 16 chr4 134554334 134554397 -21075723 + (CCCCCT)n Simple_repeat Simple_repeat 5 66 0 1 1611 423 0 0 0 chr4 134554397 134554444 -21075676 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1611 288 0 0 0 chr4 134554444 134554475 -21075645 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1611 773 207 80 35 chr4 134554543 134554743 -21075377 + ID_B1 SINE B4 1 209 -15 1 1611 1587 342 57 84 chr4 134554777 134555448 -21074672 + Looper DNA PiggyBac 498 1167 -391 1 1611 843 211 55 68 chr4 134555448 134555667 -21074453 + B3 SINE B2 1 216 0 1 1611 1587 342 57 84 chr4 134555667 134555989 -21074131 + Looper DNA PiggyBac 1168 1464 -94 1 1611 271 329 37 0 chr4 134556059 134556141 -21073979 - B4A SINE B4 -30 262 178 1 1611 383 366 113 0 chr4 134556720 134556914 -21073206 - MER2 DNA MER2_type -2 343 128 1 1611 2050 111 105 3 chr4 134556992 134557343 -21072777 - MTC LTR MaLR -2 419 33 1 1611 329 253 0 60 chr4 134557343 134557427 -21072693 + URR1B DNA MER1_type 1 79 -146 1 1611 441 0 0 0 chr4 134557427 134557476 -21072644 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1611 864 36 0 0 chr4 134557491 134557602 -21072518 + B1_Mus1 SINE Alu 38 148 0 1 1611 811 118 29 0 chr4 134557623 134557759 -21072361 + URR1B DNA MER1_type 83 222 -3 1 1611 437 227 19 55 chr4 134557802 134557936 -21072184 - RSINE1 SINE B4 -25 140 4 1 1611 195 318 0 29 chr4 134557952 134558020 -21072100 - MIRc SINE MIR -101 161 96 1 1611 282 260 38 25 chr4 134559044 134559123 -21070997 - MIR3 SINE MIR -33 175 96 1 1611 890 275 53 8 chr4 134559206 134559470 -21070650 + B4A SINE B4 8 283 -9 1 1611 432 0 0 0 chr4 134559481 134559529 -21070591 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1611 513 0 0 0 chr4 134559529 134559585 -21070535 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1611 230 206 29 14 chr4 134559713 134559782 -21070338 + GA-rich Low_complexity Low_complexity 2 71 0 1 1611 180 49 23 68 chr4 134560113 134560157 -21069963 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1611 309 218 43 54 chr4 134561415 134561507 -21068613 - MLT1G LTR MaLR -310 281 191 1 1611 4115 165 95 14 chr4 134561866 134562697 -21067423 - RMER19B LTR ERVK 0 902 55 1 1611 363 314 83 9 chr4 134562710 134562960 -21067160 + MLT1D LTR MaLR 35 321 -184 1 1611 328 318 51 9 chr4 134562956 134563096 -21067024 + MLT1B LTR MaLR 261 403 -5 1 1611 498 221 0 0 chr4 134563366 134563461 -21066659 + PB1D10 SINE Alu 15 109 -8 1 1611 28 0 0 0 chr4 134563584 134563612 -21066508 + AT_rich Low_complexity Low_complexity 1 28 0 1 1611 309 82 0 0 chr4 134564057 134564106 -21066014 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1611 270 0 0 0 chr4 134564106 134564136 -21065984 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1611 227 331 43 14 chr4 134564137 134564275 -21065845 - MIR3 SINE MIR -25 183 42 1 1611 869 204 59 0 chr4 134564726 134564912 -21065208 + B4 SINE B4 92 288 -4 1 1611 492 231 0 0 chr4 134565034 134565164 -21064956 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 1611 188 226 16 0 chr4 134565904 134565966 -21064154 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1611 634 244 82 85 chr4 134565989 134566271 -21063849 - B4 SINE B4 -11 281 1 1 1611 196 290 82 75 chr4 134566315 134566449 -21063671 - MIRm SINE MIR -25 251 117 1 1611 243 270 27 13 chr4 134566993 134567068 -21063052 + ID4 SINE ID 8 83 0 1 1611 22 0 0 0 chr4 134567363 134567385 -21062735 + AT_rich Low_complexity Low_complexity 1 22 0 1 1611 1072 211 14 9 chr4 134567391 134567601 -21062519 - B3 SINE B2 -5 211 1 1 1611 26 30 0 0 chr4 134567656 134567689 -21062431 + AT_rich Low_complexity Low_complexity 1 33 0 1 1611 183 322 22 33 chr4 134568045 134568135 -21061985 + L2c LINE L2 3133 3221 -166 2 1611 187 218 164 0 chr4 134568511 134568566 -21061554 - MIRm SINE MIR -146 130 67 1 1611 210 329 122 112 chr4 134569503 134569593 -21060527 - MIRb SINE MIR -34 234 153 2 1611 926 186 0 0 chr4 134569593 134569738 -21060382 - B1_Mur1 SINE Alu -2 147 3 2 1611 210 329 122 112 chr4 134569738 134569835 -21060285 - MIRb SINE MIR -116 152 45 2 1611 22 43 0 21 chr4 134569937 134569960 -21060160 + AT_rich Low_complexity Low_complexity 1 23 0 2 1611 1018 205 15 24 chr4 134569960 134570165 -21059955 - B3 SINE B2 -13 203 1 2 1611 22 43 0 21 chr4 134570165 134570188 -21059932 + AT_rich Low_complexity Low_complexity 1 23 0 2 1611 794 249 25 10 chr4 134570202 134570405 -21059715 + B4 SINE B4 2 207 -85 2 1611 180 77 0 0 chr4 134570624 134570650 -21059470 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1611 2670 68 3 0 chr4 134571800 134572126 -21057994 + ORR1A2 LTR MaLR 1 327 0 2 1611 1087 291 85 24 chr4 134572874 134573226 -21056894 + MTE2b LTR MaLR 3 370 0 2 1611 761 158 0 0 chr4 134573293 134573420 -21056700 - B1_Mus2 SINE Alu -20 127 1 2 1611 189 261 16 31 chr4 134573490 134573554 -21056566 - L2a LINE L2 0 3426 3324 2 1611 182 382 88 0 chr4 134573830 134573966 -21056154 + MIRb SINE MIR 3 150 -118 2 1611 356 358 22 7 chr4 134574417 134574555 -21055565 + MER117 DNA MER1_type 57 196 -1 2 1611 214 269 19 0 chr4 134575327 134575379 -21054741 - ID SINE ID -146 78 26 2 1611 341 267 103 8 chr4 134575379 134575496 -21054624 - B1F SINE Alu -8 141 14 2 1611 506 190 9 0 chr4 134575817 134575933 -21054187 + CT-rich Low_complexity Low_complexity 3 119 0 2 1611 206 79 105 0 chr4 134576260 134576298 -21053822 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 2 1611 449 286 114 5 chr4 134576381 134576554 -21053566 + B3A SINE B2 1 190 -3 2 1611 585 227 54 158 chr4 134577137 134577378 -21052742 - ID_B1 SINE B4 -7 217 2 2 1611 244 259 0 0 chr4 134577458 134577512 -21052608 + MLT1J LTR MaLR 257 310 -202 2 1611 2312 161 80 0 chr4 134577639 134578029 -21052091 - MTC LTR MaLR 0 421 1 2 1611 843 216 5 40 chr4 134579188 134579386 -21050734 + B3A SINE B2 8 198 0 2 1611 825 220 120 0 chr4 134579393 134579584 -21050536 + B3 SINE B2 3 216 0 2 1611 28 29 0 0 chr4 134579591 134579626 -21050494 + AT_rich Low_complexity Low_complexity 1 35 0 2 1611 402 269 118 84 chr4 134579838 134580041 -21050079 - B4A SINE B4 -82 210 1 2 1611 944 83 114 0 chr4 134580538 134580670 -21049450 + B1_Mm SINE Alu 1 147 0 2 1611 252 265 62 0 chr4 134581227 134581342 -21048778 - MIRb SINE MIR -140 128 2 2 1611 468 0 0 0 chr4 134582826 134582878 -21047242 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1611 288 256 23 47 chr4 134583196 134583282 -21046838 + L2b LINE L2 3292 3375 0 2 1611 282 287 60 33 chr4 134583643 134583811 -21046309 - MIRb SINE MIR -97 165 3 2 1611 1640 179 141 6 chr4 134585222 134585570 -21044550 + MTC LTR MaLR 19 413 -8 2 1611 910 42 0 0 chr4 134585586 134585706 -21044414 + B1_Mus1 SINE Alu 8 127 -21 2 1611 401 288 111 6 chr4 134585845 134586016 -21044104 - MLT1G3 LTR MaLR -194 401 213 2 1611 249 83 0 0 chr4 134587517 134587553 -21042567 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1611 818 176 0 15 chr4 134587660 134587793 -21042327 + B1_Mur1 SINE Alu 1 131 -18 2 1611 21 0 0 0 chr4 134587793 134587814 -21042306 + AT_rich Low_complexity Low_complexity 1 21 0 2 1611 189 0 0 0 chr4 134587859 134587880 -21042240 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1611 192 217 0 0 chr4 134588364 134588410 -21041710 + CT-rich Low_complexity Low_complexity 3 48 0 2 1611 767 126 8 0 chr4 134588756 134588883 -21041237 + (TTCC)n Simple_repeat Simple_repeat 4 131 0 2 1611 356 322 164 0 chr4 134589696 134589814 -21040306 - MLT1D LTR MaLR -30 475 337 2 1611 348 111 0 0 chr4 134589814 134589877 -21040243 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 2 1611 356 322 164 0 chr4 134589877 134589929 -21040191 - MLT1D LTR MaLR -169 336 278 2 1611 1059 153 28 121 chr4 134590712 134591001 -21039119 + RMER1B Other Other 805 1066 0 2 1611 865 253 19 35 chr4 134591056 134591314 -21038806 - MTD LTR MaLR -165 254 1 2 1611 335 281 130 57 chr4 134591320 134591497 -21038623 - L1M5 LINE L1 -2665 3481 3292 2 1611 584 211 53 0 chr4 134591857 134591990 -21038130 + B3A SINE B2 1 140 -58 2 1611 1406 238 77 40 chr4 134592100 134592503 -21037617 + MTD LTR MaLR 1 418 -1 2 1611 511 76 0 0 chr4 134592601 134592680 -21037440 - Lx3A LINE L1 0 6981 6903 2 1611 310 321 12 0 chr4 134592772 134592856 -21037264 + ORR1E LTR MaLR 1 85 -274 2 1611 222 37 0 0 chr4 134592911 134592938 -21037182 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1611 577 325 118 60 chr4 134592964 134593130 -21036990 - MLT1D LTR MaLR -103 402 221 2 1611 261 0 0 0 chr4 134593130 134593159 -21036961 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 2 1611 577 325 118 60 chr4 134593159 134593372 -21036748 - MLT1D LTR MaLR -285 220 2 2 1611 188 34 0 33 chr4 134593417 134593447 -21036673 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1611 838 117 0 0 chr4 134593513 134593641 -21036479 - B1_Mus2 SINE Alu -8 139 12 2 1611 488 235 7 56 chr4 134593641 134593657 -21036463 - ID_B1 SINE B4 -8 216 80 2 1611 386 313 36 30 chr4 134593654 134593822 -21036298 - FordPrefect DNA Tip100 -714 969 801 2 1611 536 308 119 27 chr4 134594693 134594953 -21035167 - B4A SINE B4 -4 288 5 2 1611 180 318 0 29 chr4 134594982 134595050 -21035070 - L2c LINE L2 -36 3351 3286 2 1611 369 0 0 0 chr4 134595055 134595096 -21035024 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1611 938 304 63 16 chr4 134596696 134597060 -21033060 + RMER15-int LTR ERVL 549 929 -4070 2 1611 207 0 0 0 chr4 134597073 134597096 -21033024 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2 1611 834 177 13 13 chr4 134597096 134597234 -21032886 - B1_Mur2 SINE Alu -10 139 1 2 1611 1659 192 135 44 chr4 134597568 134597642 -21032478 - RLTR20A LTR ERVK 0 541 436 2 1611 426 20 0 0 chr4 134597642 134597693 -21032427 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1611 1659 192 135 44 chr4 134597693 134598114 -21032006 - RLTR20A LTR ERVK -106 435 1 2 1611 2288 259 51 58 chr4 134598114 134598857 -21031263 + RMER15-int LTR ERVL 4238 4975 -24 2 1611 306 50 0 0 chr4 134598857 134598897 -21031223 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1611 661 88 26 26 chr4 134598898 134599049 -21031071 + (TCTCTG)n Simple_repeat Simple_repeat 6 156 0 2 1611 382 375 58 50 chr4 134599189 134599361 -21030759 + RMER15 LTR ERVL 296 467 -108 2 1611 1398 216 160 109 chr4 134599361 134599866 -21030254 - MT2A LTR ERVL -1 532 2 2 1611 382 375 58 50 chr4 134599866 134599971 -21030149 + RMER15 LTR ERVL 468 575 0 2 1611 229 285 61 53 chr4 134600003 134600134 -21029986 + MIRm SINE MIR 46 177 -91 2 1611 184 222 0 0 chr4 134600398 134600434 -21029686 + MIR SINE MIR 116 151 -57 2 1611 1235 281 58 6 chr4 134600600 134600944 -21029176 - MTEa LTR MaLR -1 378 17 2 1611 615 268 6 18 chr4 134600957 134601128 -21028992 - MTEa-int LTR MaLR -1 1579 1411 2 1611 993 263 63 90 chr4 134601473 134601539 -21028581 - MTD LTR MaLR 0 419 358 2 1611 1636 207 45 50 chr4 134601539 134601915 -21028205 - ORR1D1 LTR MaLR 0 374 1 2 1611 993 264 66 92 chr4 134601915 134602228 -21027892 - MTD LTR MaLR -62 357 8 2 1611 1675 224 18 64 chr4 134602241 134602676 -21027444 - MTEa-int LTR MaLR -163 1417 1003 2 1611 2074 121 9 67 chr4 134602775 134603121 -21026999 + ORR1A3 LTR MaLR 1 326 0 2 1611 552 362 38 17 chr4 134603306 134603629 -21026491 - MLT1A0 LTR MaLR -10 380 27 2 1611 238 300 256 20 chr4 134603933 134604185 -21025935 - L2a LINE L2 -6 3420 3109 2 1611 201 240 20 0 chr4 134605518 134605568 -21024552 - L2a LINE L2 -320 3067 3017 2 1611 240 317 0 61 chr4 134605671 134605863 -21024257 + GA-rich Low_complexity Low_complexity 1 180 0 2 1611 370 243 14 0 chr4 134606349 134606423 -21023697 + L1MEc LINE L1 2218 2292 -4108 2 1611 738 44 13 5 chr4 134607933 134608045 -21022075 + B1_Mus1 SINE Alu 33 150 0 2 1611 1272 77 54 16 chr4 134608062 134608232 -21021888 + B2_Mm2 SINE B2 3 180 -15 2 1611 582 54 0 0 chr4 134608232 134608306 -21021814 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 2 1611 1272 77 54 16 chr4 134608306 134608321 -21021799 + B2_Mm2 SINE B2 181 195 0 2 1611 486 79 0 0 chr4 134608700 134608776 -21021344 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1611 372 254 93 0 chr4 134608853 134608989 -21021131 - MIR3 SINE MIR -24 184 33 2 1611 1816 168 4 166 chr4 134609121 134609579 -21020541 + ORR1C2 LTR MaLR 1 384 0 2 1611 295 250 44 22 chr4 134610057 134610147 -21019973 + MIRb SINE MIR 39 130 -138 2 1612 339 130 0 0 chr4 134611546 134611600 -21018520 + (CAGA)n Simple_repeat Simple_repeat 4 57 0 2 1612 232 161 32 0 chr4 134611619 134611681 -21018439 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1612 2490 69 22 12 chr4 134611887 134612211 -21017909 + ORR1A2 LTR MaLR 1 327 0 2 1612 509 222 27 36 chr4 134612669 134612781 -21017339 - B3A SINE B2 -79 116 6 2 1612 233 323 0 119 chr4 134613425 134613534 -21016586 - Tigger5 DNA MER2_type 0 2406 2311 2 1612 522 353 43 35 chr4 134613540 134613772 -21016348 - Tigger5 DNA MER2_type -2170 236 3 2 1612 470 289 131 10 chr4 134613809 134614008 -21016112 - ID_B1 SINE B4 0 224 2 2 1612 577 259 194 32 chr4 134614100 134614347 -21015773 - B4A SINE B4 -1 291 5 2 1612 300 341 50 44 chr4 134614371 134614433 -21015687 - B3A SINE B2 -9 184 3 2 1612 592 235 25 0 chr4 134614433 134614552 -21015568 - RSINE1 SINE B4 -40 125 4 2 1612 220 344 0 0 chr4 134614751 134614812 -21015308 + MIRm SINE MIR 216 276 0 2 1612 330 263 29 39 chr4 134615741 134615844 -21014276 - ID_B1 SINE B4 -10 214 113 2 1612 663 268 32 25 chr4 134615973 134616130 -21013990 + RSINE1 SINE B4 8 165 0 2 1612 617 158 8 0 chr4 134616147 134616267 -21013853 + (CA)n Simple_repeat Simple_repeat 1 121 0 2 1612 236 196 54 0 chr4 134617488 134617544 -21012576 + GA-rich Low_complexity Low_complexity 2 60 0 2 1612 297 0 0 0 chr4 134617648 134617681 -21012439 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2 1612 278 303 30 10 chr4 134618405 134618505 -21011615 - BC1_Mm scRNA scRNA -45 107 6 2 1612 1120 175 0 30 chr4 134618529 134618729 -21011391 + URR1B DNA MER1_type 1 194 -31 3 1612 429 329 40 27 chr4 134619141 134619291 -21010829 - B4A SINE B4 -139 153 2 3 1612 233 294 89 27 chr4 134619467 134619579 -21010541 - ORR1E LTR MaLR -222 137 19 3 1612 1493 157 88 94 chr4 134619604 134619652 -21010468 - ORR1D1 LTR MaLR -4 370 306 3 1612 867 157 0 70 chr4 134619652 134619810 -21010310 + B1_Mur2 SINE Alu 1 147 -2 3 1612 1493 157 88 94 chr4 134619810 134619884 -21010236 - ORR1D1 LTR MaLR -69 305 224 3 1612 1049 32 22 40 chr4 134619884 134620109 -21010011 + (CAGG)n Simple_repeat Simple_repeat 1 220 0 3 1612 1493 157 88 94 chr4 134620109 134620336 -21009784 - ORR1D1 LTR MaLR -151 223 22 3 1612 1333 193 34 71 chr4 134620340 134620691 -21009429 + RLTR20B3 LTR ERVK 21 358 -219 3 1612 843 256 94 47 chr4 134621249 134621503 -21008617 + MTE2a LTR MaLR 114 379 0 3 1612 456 19 0 0 chr4 134622129 134622182 -21007938 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1612 319 320 78 0 chr4 134622229 134622332 -21007788 + MIR SINE MIR 21 131 -77 3 1612 188 241 26 0 chr4 134622431 134622486 -21007634 + L2b LINE L2 3028 3084 -291 3 1612 388 284 18 9 chr4 134622985 134623095 -21007025 + MIR SINE MIR 37 147 -61 3 1612 385 376 19 0 chr4 134623430 134623592 -21006528 + MIR SINE MIR 2 166 -96 3 1612 333 207 0 0 chr4 134623846 134623933 -21006187 + (TGG)n Simple_repeat Simple_repeat 1 87 0 3 1612 308 312 0 27 chr4 134623950 134624098 -21006022 + (TGG)n Simple_repeat Simple_repeat 2 145 0 3 1612 357 82 0 0 chr4 134624294 134624343 -21005777 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 3 1612 637 232 75 154 chr4 134624812 134625117 -21005003 + B4 SINE B4 1 281 -11 3 1612 723 220 41 51 chr4 134625189 134625385 -21004735 + B2_Mm2 SINE B2 1 194 -1 3 1612 252 86 0 0 chr4 134625385 134625420 -21004700 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 3 1612 572 241 27 7 chr4 134626764 134626910 -21003210 - B1F SINE Alu 0 149 1 3 1612 430 288 274 0 chr4 134627430 134627690 -21002430 + Tigger7 DNA MER2_type 24 354 -2137 3 1612 291 343 99 17 chr4 134627843 134628015 -21002105 + B4 SINE B4 2 187 -105 3 1612 839 187 35 70 chr4 134628055 134628256 -21001864 + B3A SINE B2 5 198 0 3 1612 381 43 0 0 chr4 134628341 134628388 -21001732 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1612 202 353 80 55 chr4 134629145 134629346 -21000774 + L2c LINE L2 3173 3378 -9 3 1612 941 167 119 57 chr4 134629736 134629946 -21000174 - URR1A DNA MER1_type -3 223 1 3 1612 213 337 51 0 chr4 134630238 134630362 -20999758 - MIR SINE MIR -76 200 64 3 1612 349 322 40 24 chr4 134632281 134632405 -20997715 - MIRb SINE MIR -108 160 35 3 1612 523 306 163 20 chr4 134633478 134633681 -20996439 + MTE-int LTR MaLR 1132 1363 -217 3 1612 1075 191 0 26 chr4 134633678 134633872 -20996248 - B3 SINE B2 -27 189 1 3 1612 289 149 103 15 chr4 134633872 134633940 -20996180 + MTE-int LTR MaLR 1344 1417 -163 3 1612 346 318 55 50 chr4 134633924 134634104 -20996016 + MTE-int LTR MaLR 1347 1527 -53 3 1612 322 287 92 9 chr4 134634104 134634213 -20995907 + MTEb LTR MaLR 1 118 -241 3 1612 346 322 16 24 chr4 134634243 134634367 -20995753 + MTEb LTR MaLR 249 371 -8 3 1612 252 0 0 0 chr4 134635385 134635413 -20994707 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1612 252 150 300 0 chr4 134635413 134635473 -20994647 - ID4_ SINE ID -5 78 1 3 1612 205 194 0 0 chr4 134635549 134635585 -20994535 - L2c LINE L2 -15 3372 3337 3 1612 210 71 0 0 chr4 134635940 134635968 -20994152 + (CGAG)n Simple_repeat Simple_repeat 2 29 0 3 1612 504 0 0 0 chr4 134636346 134636402 -20993718 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1612 285 238 34 51 chr4 134637060 134637237 -20992883 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 3 1612 315 149 0 0 chr4 134637810 134637884 -20992236 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1612 285 266 62 15 chr4 134638583 134638713 -20991407 + (CATG)n Simple_repeat Simple_repeat 2 137 0 3 1612 252 59 0 0 chr4 134638805 134638839 -20991281 + (CATG)n Simple_repeat Simple_repeat 1 34 0 3 1612 459 0 0 0 chr4 134638910 134638961 -20991159 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1612 528 258 64 38 chr4 134639301 134639458 -20990662 - B3A SINE B2 -1 197 37 3 1612 216 0 0 0 chr4 134640909 134640933 -20989187 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 3 1612 236 151 127 17 chr4 134640972 134641038 -20989082 - MIR SINE MIR -119 149 75 3 1612 576 263 22 0 chr4 134641043 134641180 -20988940 + ID_B1 SINE B4 82 221 -3 3 1612 194 286 100 0 chr4 134641766 134641836 -20988284 + MIR SINE MIR 77 153 -55 3 1612 195 299 119 40 chr4 134642517 134642618 -20987502 + MIR SINE MIR 30 138 -124 3 1612 498 250 14 35 chr4 134642651 134642792 -20987328 + MIR SINE MIR 36 173 -89 3 1612 302 284 240 90 chr4 134642962 134643101 -20987019 - MTEb LTR MaLR -58 321 180 3 1612 1000 120 42 0 chr4 134643101 134643243 -20986877 - B1_Mur4 SINE Alu -1 149 2 3 1612 302 284 240 90 chr4 134643243 134643382 -20986738 - MTEb LTR MaLR -200 179 1 3 1612 1468 213 80 28 chr4 134643533 134643904 -20986216 + MTE2a LTR MaLR 1 374 -5 3 1612 279 0 0 0 chr4 134643908 134643939 -20986181 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1612 559 193 150 8 chr4 134643939 134644059 -20986061 - B1_Mur2 SINE Alu -11 138 2 3 1612 185 321 18 0 chr4 134645425 134645481 -20984639 + MIRb SINE MIR 193 249 -19 3 1612 1619 240 191 18 chr4 134645697 134646211 -20983909 + RMER20B LTR ERVK 13 615 -12 3 1612 243 310 12 12 chr4 134646207 134646292 -20983828 + RMER20B LTR ERVK 535 619 -8 3 1612 332 332 125 51 chr4 134646524 134646997 -20983123 - MLT1G3 LTR MaLR -12 557 57 3 1612 420 252 37 9 chr4 134647068 134647176 -20982944 + B1F1 SINE Alu 1 111 -38 3 1612 690 179 0 0 chr4 134647201 134647335 -20982785 + CT-rich Low_complexity Low_complexity 1 134 0 3 1612 634 269 14 8 chr4 134647350 134647515 -20982605 - ID_B1 SINE B4 -44 248 80 3 1612 286 318 76 88 chr4 134647804 134648066 -20982054 - MLT1E3 LTR MaLR -128 525 267 3 1612 439 194 22 1 chr4 134648072 134648168 -20981952 - MTE2a LTR MaLR 0 379 277 3 1612 403 307 55 35 chr4 134648230 134648375 -20981745 + RSINE1 SINE B4 12 159 -6 3 1612 288 178 39 52 chr4 134648438 134648515 -20981605 - MTE2b-int LTR MaLR -216 1364 1289 3 1612 852 183 14 27 chr4 134648516 134648662 -20981458 + B1_Mur2 SINE Alu 1 144 -5 3 1612 1059 141 23 0 chr4 134648677 134648854 -20981266 + B2_Mm2 SINE B2 6 186 -9 3 1612 1907 241 190 43 chr4 134648829 134649475 -20980645 - MTE2b-int LTR MaLR -261 1319 579 3 1612 572 74 0 21 chr4 134649489 134649585 -20980535 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 3 1612 1009 288 39 30 chr4 134649590 134649939 -20980181 - MTE2b-int LTR MaLR -1179 401 19 3 1612 1092 243 136 6 chr4 134649953 134650276 -20979844 - MTE2b LTR MaLR -5 374 10 3 1612 358 229 14 0 chr4 134651036 134651106 -20979014 + ID4 SINE ID 5 75 -8 3 1612 318 87 0 0 chr4 134651150 134651196 -20978924 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 3 1612 678 213 0 34 chr4 134651196 134651334 -20978786 - B1_Mur2 SINE Alu -12 137 3 3 1612 354 329 0 54 chr4 134651334 134651365 -20978755 - ID SINE ID -145 79 57 3 1612 459 282 18 0 chr4 134651365 134651475 -20978645 + RSINE1 SINE B4 26 137 -28 3 1612 24 53 0 0 chr4 134651492 134651530 -20978590 + AT_rich Low_complexity Low_complexity 1 38 0 3 1612 504 0 0 0 chr4 134652153 134652209 -20977911 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1612 208 245 180 4 chr4 134653635 134653745 -20976375 - MIRc SINE MIR -138 138 3 3 1612 302 236 0 82 chr4 134655234 134655428 -20974692 + (CACCC)n Simple_repeat Simple_repeat 1 178 0 3 1612 189 0 0 0 chr4 134655456 134655477 -20974643 + (CCCA)n Simple_repeat Simple_repeat 2 22 0 3 1612 288 0 0 0 chr4 134657142 134657174 -20972946 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1612 189 229 76 76 chr4 134657463 134657529 -20972591 + MIRm SINE MIR 119 184 -92 3 1612 238 271 98 59 chr4 134657766 134657919 -20972201 - MLT1K LTR MaLR -360 235 77 3 1612 285 237 0 0 chr4 134658254 134658313 -20971807 - MIR SINE MIR -114 148 90 3 1612 224 259 29 92 chr4 134658499 134658618 -20971502 - MIRc SINE MIR -92 176 61 3 1612 326 325 54 23 chr4 134659197 134659326 -20970794 + MER63A DNA AcHobo 39 171 -39 3 1612 669 164 19 0 chr4 134659326 134659485 -20970635 + CT-rich Low_complexity Low_complexity 1 162 0 3 1612 299 301 176 0 chr4 134659491 134659644 -20970476 + MIR SINE MIR 73 252 -10 3 1612 531 0 0 0 chr4 134660113 134660172 -20969948 + (TCC)n Simple_repeat Simple_repeat 1 59 0 3 1612 324 268 87 92 chr4 134660803 134660976 -20969144 + B4A SINE B4 50 221 -71 3 1612 927 100 0 21 chr4 134660837 134660980 -20969140 + B1_Mur3 SINE Alu 8 147 -2 3 1612 332 319 0 90 chr4 134661007 134661162 -20968958 + MLT1K LTR MaLR 365 505 -90 3 1612 523 265 154 38 chr4 134661474 134661759 -20968361 + L2b LINE L2 2743 3065 -310 3 1612 675 0 0 0 chr4 134661759 134661834 -20968286 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1612 366 278 99 70 chr4 134661834 134661950 -20968170 + L2b LINE L2 3066 3175 -251 3 1612 281 276 99 30 chr4 134662204 134662305 -20967815 + MIRb SINE MIR 49 156 -112 3 1612 340 333 116 0 chr4 134662451 134662598 -20967522 + MLT1K LTR MaLR 425 588 -7 3 1612 208 377 106 9 chr4 134662989 134663206 -20966914 + L3 LINE CR1 4222 4459 -30 3 1612 534 259 89 0 chr4 134663534 134663669 -20966451 + RSINE1 SINE B4 2 148 -17 3 1612 724 157 29 17 chr4 134663725 134663900 -20966220 + G-rich Low_complexity Low_complexity 3 179 0 3 1612 1059 101 0 33 chr4 134663911 134664095 -20966025 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 3 1612 454 173 9 9 chr4 134664095 134664200 -20965920 + G-rich Low_complexity Low_complexity 5 109 0 3 1612 849 257 48 0 chr4 134665233 134665439 -20964681 + ID_B1 SINE B4 5 220 -4 3 1612 366 23 0 0 chr4 134665439 134665482 -20964638 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 3 1612 1466 215 147 3 chr4 134666271 134666432 -20963688 - ORR1D1 LTR MaLR -1 373 178 3 1612 1422 0 0 0 chr4 134666432 134666590 -20963530 + (GGGAGA)n Simple_repeat Simple_repeat 5 162 0 4 1612 1466 215 147 3 chr4 134666590 134666754 -20963366 - ORR1D1 LTR MaLR -197 177 3 3 1612 351 295 188 50 chr4 134667565 134667783 -20962337 - L2b LINE L2 0 3375 3128 4 1612 275 292 0 0 chr4 134668013 134668085 -20962035 + ID4 SINE ID 12 83 0 4 1612 231 292 50 8 chr4 134668318 134668439 -20961681 + HAL1 LINE L1 1483 1608 -899 4 1612 337 137 24 49 chr4 134668512 134668635 -20961485 + (CAGAGA)n Simple_repeat Simple_repeat 2 121 0 4 1612 203 177 48 0 chr4 134668723 134668785 -20961335 + T-rich Low_complexity Low_complexity 3 67 0 4 1612 1246 41 7 0 chr4 134668786 134668932 -20961188 - B1_Mm SINE Alu 0 147 1 4 1612 626 194 40 0 chr4 134668933 134669057 -20961063 - B1_Mur1 SINE Alu -1 148 20 4 1612 287 312 43 94 chr4 134669314 134669452 -20960668 + LTR16C LTR ERVL 359 489 0 4 1612 203 339 37 105 chr4 134669996 134670187 -20959933 + MIR SINE MIR 39 216 -46 4 1612 482 0 17 0 chr4 134672875 134672933 -20957187 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1612 277 283 37 27 chr4 134673283 134673370 -20956750 + B1F SINE Alu 13 90 -59 4 1612 1480 38 16 37 chr4 134673370 134673559 -20956561 - B2_Mm2 SINE B2 -10 185 1 4 1612 245 301 17 120 chr4 134673559 134673588 -20956532 + PB1D10 SINE Alu 88 117 0 4 1612 305 315 32 58 chr4 134673796 134673951 -20956169 + B4 SINE B4 59 209 -83 4 1612 237 319 0 0 chr4 134673976 134674048 -20956072 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1612 342 123 0 0 chr4 134674050 134674107 -20956013 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 4 1612 231 282 192 25 chr4 134675040 134675160 -20954960 - MIRb SINE MIR -110 158 19 4 1612 291 114 0 0 chr4 134676802 134676846 -20953274 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1612 263 347 52 39 chr4 134678916 134679069 -20951051 - Charlie4a DNA MER1_type -351 157 3 4 1612 280 283 45 45 chr4 134679374 134679485 -20950635 + MIRm SINE MIR 86 196 -80 4 1612 181 239 110 27 chr4 134679745 134679818 -20950302 + L2 LINE L2 2084 2162 -1257 4 1612 341 354 69 12 chr4 134680077 134680237 -20949883 + MIR SINE MIR 23 191 -71 4 1612 22 80 0 0 chr4 134681126 134681176 -20948944 + AT_rich Low_complexity Low_complexity 1 50 0 4 1612 615 92 0 0 chr4 134681473 134681560 -20948560 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 1612 330 87 0 0 chr4 134681562 134681608 -20948512 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1612 460 306 152 82 chr4 134681639 134681711 -20948409 - L1_Rod LINE L1 -257 5623 5573 4 1612 794 192 14 7 chr4 134681711 134681858 -20948262 - B1_Mur1 SINE Alu -1 148 1 4 1612 468 301 118 93 chr4 134681858 134682385 -20947735 - L1_Rod LINE L1 -308 5572 4951 4 1612 927 223 64 5 chr4 134682385 134682588 -20947532 + B3 SINE B2 2 216 0 4 1612 468 298 91 102 chr4 134682588 134682811 -20947309 - L1_Rod LINE L1 -897 4950 4719 4 1612 395 177 0 10 chr4 134682829 134682926 -20947194 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 1612 267 279 16 0 chr4 134682926 134682987 -20947133 - ID4 SINE ID -19 64 3 4 1612 769 251 73 15 chr4 134683577 134683783 -20946337 + ID_B1 SINE B4 1 218 -6 4 1612 497 238 4 0 chr4 134683784 134684056 -20946064 + GA-rich Low_complexity Low_complexity 1 273 0 4 1612 336 285 80 26 chr4 134684329 134684527 -20945593 + MIR SINE MIR 11 223 -45 4 1612 981 151 211 21 chr4 134686087 134686277 -20943843 - URR1A DNA MER1_type 0 226 1 4 1612 216 0 0 0 chr4 134686355 134686379 -20943741 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1612 180 278 55 14 chr4 134686379 134686441 -20943679 - MIR3 SINE MIR -66 142 80 4 1612 230 246 25 76 chr4 134687454 134687505 -20942615 - MER45A DNA Tip100 -34 144 98 4 1612 552 291 16 60 chr4 134687505 134687688 -20942432 + B4A SINE B4 2 176 -116 4 1612 225 0 0 0 chr4 134687738 134687763 -20942357 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1612 943 60 161 0 chr4 134687909 134688058 -20942062 + B2_Mm2 SINE B2 17 189 -6 4 1612 36 0 0 0 chr4 134688058 134688094 -20942026 + AT_rich Low_complexity Low_complexity 1 36 0 4 1612 243 0 0 0 chr4 134688366 134688393 -20941727 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 4 1612 481 210 0 0 chr4 134688400 134688481 -20941639 - ID4_ SINE ID -2 81 1 4 1612 261 170 0 110 chr4 134688483 134688584 -20941536 - PB1 SINE Alu 0 149 66 4 1612 362 200 31 82 chr4 134688595 134688693 -20941427 - B1F SINE Alu -27 122 30 4 1612 654 206 37 64 chr4 134688807 134688994 -20941126 - B3A SINE B2 -16 182 1 4 1612 247 207 35 0 chr4 134689421 134689479 -20940641 + MER103 DNA DNA 46 105 -61 4 1612 312 255 49 0 chr4 134693614 134693716 -20936404 + L1ME4a LINE L1 6014 6120 -4 4 1612 592 231 8 8 chr4 134694303 134694425 -20935695 - B1F1 SINE Alu 0 149 28 4 1612 394 286 117 77 chr4 134694862 134695240 -20934880 - MLT1D LTR MaLR -248 379 5 4 1612 321 135 0 0 chr4 134695295 134695347 -20934773 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 4 1612 585 280 67 0 chr4 134695738 134695888 -20934232 + RSINE1 SINE B4 2 161 -4 4 1612 273 307 25 66 chr4 134696156 134696278 -20933842 - PB1D10 SINE Alu 0 117 1 4 1612 554 224 35 64 chr4 134696278 134696356 -20933764 - ID SINE ID -150 74 2 4 1612 299 233 27 14 chr4 134697095 134697169 -20932951 + L2c LINE L2 3097 3171 -216 4 1612 283 229 88 122 chr4 134697778 134697967 -20932153 + MIR3 SINE MIR 32 223 -53 4 1612 223 325 64 13 chr4 134698338 134698416 -20931704 + ID4_ SINE ID 1 82 -1 4 1612 800 129 30 8 chr4 134698552 134698685 -20931435 - B1_Mur2 SINE Alu 0 149 14 4 1612 550 299 7 14 chr4 134698741 134698887 -20931233 - ID_B1 SINE B4 0 224 80 4 1612 713 245 0 7 chr4 134698899 134699039 -20931081 - B1_Mur2 SINE Alu -9 140 2 4 1612 201 217 22 0 chr4 134699044 134699090 -20931030 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1612 452 261 118 42 chr4 134699351 134699495 -20930625 - RSINE1 SINE B4 -6 159 5 4 1612 383 311 35 24 chr4 134699993 134700120 -20930000 + ID_B1 SINE B4 81 209 -15 4 1612 334 240 0 0 chr4 134700120 134700195 -20929925 - HAL1-2a_MD LINE L1 -520 2504 2430 4 1612 1170 264 32 28 chr4 134700206 134700491 -20929629 + B4A SINE B4 3 288 -4 4 1612 214 293 17 0 chr4 134700594 134700652 -20929468 - L3 LINE CR1 -355 4134 4076 4 1612 220 368 37 43 chr4 134701488 134701650 -20928470 + MIRb SINE MIR 6 166 -102 4 1612 598 304 6 25 chr4 134702020 134702182 -20927938 + B4A SINE B4 128 286 -6 4 1612 324 0 0 0 chr4 134702247 134702283 -20927837 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1612 366 302 36 48 chr4 134702433 134702600 -20927520 - MER45A DNA Tip100 -9 169 5 4 1612 552 294 14 0 chr4 134703423 134703566 -20926554 + MIR SINE MIR 6 150 -112 4 1612 229 304 109 34 chr4 134705699 134705818 -20924302 - LTR83 LTR ERVL -636 144 17 4 1612 22 70 0 0 chr4 134708486 134708529 -20921591 + GC_rich Low_complexity Low_complexity 1 43 0 4 1612 250 228 0 47 chr4 134708567 134708673 -20921447 + C-rich Low_complexity Low_complexity 4 104 0 4 1612 180 0 0 0 chr4 134708750 134708770 -20921350 + (CGG)n Simple_repeat Simple_repeat 3 22 0 4 1612 23 33 0 0 chr4 134708810 134708840 -20921280 + GC_rich Low_complexity Low_complexity 1 30 0 4 1612 567 0 0 0 chr4 134709956 134710019 -20920101 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1612 182 118 29 0 chr4 134710282 134710316 -20919804 + (GGA)n Simple_repeat Simple_repeat 1 35 0 4 1612 229 175 0 0 chr4 134711540 134711580 -20918540 + C-rich Low_complexity Low_complexity 1 40 0 4 1612 453 297 64 21 chr4 134712804 134712945 -20917175 - B1F2 SINE Alu -1 148 2 4 1612 342 330 35 0 chr4 134713135 134713250 -20916870 + MIR3 SINE MIR 46 164 -44 4 1612 209 267 0 32 chr4 134713354 134713416 -20916704 + MIR3 SINE MIR 148 207 -1 4 1612 258 341 0 21 chr4 134714152 134714245 -20915875 - BC1_Mm scRNA scRNA -56 96 6 4 1612 243 0 0 0 chr4 134714429 134714456 -20915664 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1612 184 308 54 11 chr4 134715282 134715374 -20914746 + MIRb SINE MIR 56 151 -117 4 1612 853 339 13 41 chr4 134715643 134715960 -20914160 - Charlie4a DNA MER1_type -198 310 3 4 1612 267 269 26 0 chr4 134715975 134716053 -20914067 - ID4 SINE ID -3 80 1 4 1612 186 43 0 0 chr4 134716191 134716214 -20913906 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 4 1612 231 256 40 64 chr4 134716229 134716354 -20913766 - L2 LINE L2 -2825 594 473 4 1612 266 205 13 0 chr4 134717193 134717271 -20912849 + GA-rich Low_complexity Low_complexity 2 80 0 4 1612 756 229 62 21 chr4 134718062 134718215 -20911905 + B3 SINE B2 17 167 -49 4 1612 186 43 0 0 chr4 134718215 134718238 -20911882 + (CATA)n Simple_repeat Simple_repeat 4 26 0 4 1612 756 229 62 21 chr4 134718238 134718276 -20911844 + B3 SINE B2 168 216 0 4 1612 651 178 0 17 chr4 134718305 134718425 -20911695 + B1_Mur4 SINE Alu 32 149 -1 4 1612 753 12 0 0 chr4 134718551 134718637 -20911483 + (TTC)n Simple_repeat Simple_repeat 2 87 0 4 1612 1113 66 7 0 chr4 134718647 134718783 -20911337 - B1_Mus2 SINE Alu -9 138 2 4 1612 218 315 127 30 chr4 134720025 134720159 -20909961 + MIRc SINE MIR 2 148 -120 4 1612 387 0 0 0 chr4 134721101 134721144 -20908976 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1612 265 231 278 12 chr4 134721699 134721861 -20908259 + L2 LINE L2 2844 3048 -371 4 1612 621 61 0 0 chr4 134722753 134722835 -20907285 + (TC)n Simple_repeat Simple_repeat 2 83 0 4 1612 180 156 0 0 chr4 134723739 134723771 -20906349 - MIR SINE MIR -65 143 112 4 1612 1109 145 31 28 chr4 134723864 134724097 -20906023 - MTD LTR MaLR 0 419 170 4 1612 280 200 48 48 chr4 134724086 134724170 -20905950 + MTD LTR MaLR 336 419 0 5 1612 185 288 50 17 chr4 134726105 134726165 -20903955 - MIRb SINE MIR -90 178 117 5 1612 446 251 4 0 chr4 134728717 134728819 -20901301 + MIRc SINE MIR 47 151 -57 5 1612 229 242 37 32 chr4 134730228 134730323 -20899797 - MIRc SINE MIR -136 132 37 5 1612 411 113 0 0 chr4 134730712 134730774 -20899346 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1612 522 46 0 0 chr4 134732069 134732134 -20897986 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1612 387 0 0 0 chr4 134732134 134732176 -20897944 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1612 366 23 0 0 chr4 134732275 134732318 -20897802 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1612 203 146 0 24 chr4 134733492 134733534 -20896586 + GA-rich Low_complexity Low_complexity 2 42 0 5 1612 757 189 7 7 chr4 134736789 134736928 -20893192 - B1_Mur1 SINE Alu -9 140 2 5 1612 329 253 74 0 chr4 134737196 134737291 -20892829 - PB1D7 SINE Alu -7 113 12 5 1612 292 287 75 0 chr4 134737214 134737308 -20892812 - ID_B1 SINE B4 -54 170 70 5 1612 1119 36 73 0 chr4 134737570 134737707 -20892413 + B1_Mus2 SINE Alu 1 147 0 5 1612 475 214 47 28 chr4 134737731 134737837 -20892283 + PB1D7 SINE Alu 1 108 -12 5 1612 265 297 0 21 chr4 134738095 134738188 -20891932 + C-rich Low_complexity Low_complexity 6 96 0 5 1612 659 220 14 0 chr4 134738190 134738331 -20891789 + ID_B1 SINE B4 81 223 -1 5 1612 573 205 19 6 chr4 134738340 134738497 -20891623 + (TAGA)n Simple_repeat Simple_repeat 2 160 0 5 1612 191 297 16 0 chr4 134738590 134738718 -20891402 + (TATG)n Simple_repeat Simple_repeat 4 133 0 5 1612 342 277 0 0 chr4 134738805 134738888 -20891232 + MLT1C LTR MaLR 59 141 -326 5 1612 579 207 62 79 chr4 134738987 134739165 -20890955 + L1MC LINE L1 4540 4714 -1432 5 1612 240 100 0 0 chr4 134739194 134739234 -20890886 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 5 1612 1147 83 0 7 chr4 134739234 134739380 -20890740 - B1_Mus2 SINE Alu 0 147 3 5 1612 366 308 138 38 chr4 134739434 134739492 -20890628 - L1MC1 LINE L1 -16 6317 6257 5 1612 414 0 0 0 chr4 134739492 134739538 -20890582 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1612 366 308 138 38 chr4 134739538 134739898 -20890222 - L1MC1 LINE L1 -77 6256 5858 5 1612 476 260 10 0 chr4 134739905 134740009 -20890111 - RSINE1 SINE B4 -52 113 9 5 1612 703 275 16 11 chr4 134740074 134740300 -20889820 - L1MC1 LINE L1 -284 5872 5638 5 1612 393 22 0 0 chr4 134740300 134740346 -20889774 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 5 1612 2773 31 47 0 chr4 134740409 134740731 -20889389 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 201 20163 40 47 14 chr4 134740731 134743308 -20886812 + IAPEz-int LTR ERVK 8 2670 -3811 5 1613 9084 24 2 6 chr4 134743286 134744372 -20885748 + IAPEz-int LTR ERVK 5400 6481 0 5 1613 2773 31 47 0 chr4 134744372 134744694 -20885426 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1613 325 304 161 38 chr4 134744694 134744930 -20885190 + L1MB5 LINE L1 5851 6115 -59 5 1613 232 213 0 90 chr4 134744940 134745007 -20885113 - ID4 SINE ID -20 63 3 5 1613 787 272 34 24 chr4 134745031 134745238 -20884882 + ID_B1 SINE B4 1 209 -15 5 1613 461 17 17 0 chr4 134745248 134745306 -20884814 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 5 1613 481 253 150 56 chr4 134745319 134745480 -20884640 + B3A SINE B2 2 183 -15 5 1613 261 0 0 0 chr4 134745480 134745509 -20884611 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1613 481 253 150 56 chr4 134745509 134745527 -20884593 + B3A SINE B2 184 198 0 5 1613 244 245 27 0 chr4 134745711 134745781 -20884339 - MER5A DNA MER1_type -79 110 34 5 1613 228 271 58 36 chr4 134745866 134746000 -20884120 - MIRc SINE MIR -89 173 33 5 1613 498 242 27 169 chr4 134746213 134746397 -20883723 + MTD LTR MaLR 5 187 -232 5 1613 900 213 66 91 chr4 134746447 134746721 -20883399 + MTE2a LTR MaLR 113 379 0 5 1613 266 263 28 120 chr4 134746793 134746901 -20883219 + B4A SINE B4 49 146 -146 5 1613 436 264 0 43 chr4 134746845 134746960 -20883160 + PB1D10 SINE Alu 6 115 -2 5 1613 470 292 60 0 chr4 134747647 134747815 -20882305 + Kanga1b DNA Tc2 173 350 -429 5 1613 285 273 90 9 chr4 134747843 134747954 -20882166 + B4A SINE B4 48 167 -125 5 1613 436 213 32 0 chr4 134747881 134747975 -20882145 + PB1D10 SINE Alu 7 103 -14 5 1613 203 0 37 0 chr4 134747977 134748004 -20882116 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1613 254 217 0 0 chr4 134748165 134748211 -20881909 - MER63B DNA AcHobo -49 387 342 5 1613 268 278 103 26 chr4 134748274 134748429 -20881691 + Kanga1b DNA Tc2 610 776 -3 5 1613 216 364 71 0 chr4 134749144 134749243 -20880877 + MIRb SINE MIR 139 244 -24 5 1613 596 303 148 13 chr4 134749685 134750076 -20880044 + LTR33A_ LTR ERVL 60 503 -28 5 1613 977 134 0 0 chr4 134750079 134750221 -20879899 + B1_Mus1 SINE Alu 5 146 -2 5 1613 846 206 28 6 chr4 134751047 134751228 -20878892 + ORR1D1 LTR MaLR 1 185 -189 5 1613 1518 183 140 3 chr4 134751419 134751748 -20878372 - ORR1D1 LTR MaLR 0 374 1 5 1613 374 282 162 38 chr4 134752524 134752734 -20877386 + B4A SINE B4 5 240 -52 5 1613 217 345 99 9 chr4 134752740 134752851 -20877269 + RSINE1 SINE B4 43 163 -2 5 1613 313 269 0 60 chr4 134752883 134752966 -20877154 + B4A SINE B4 215 292 0 5 1613 254 258 0 29 chr4 134752976 134753044 -20877076 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1613 418 279 35 42 chr4 134754016 134754158 -20875962 + L1ME4a LINE L1 5976 6116 -8 5 1613 230 269 53 21 chr4 134754383 134754478 -20875642 - MIR SINE MIR -76 132 35 5 1613 863 156 43 0 chr4 134754663 134754804 -20875316 + B1_Mus1 SINE Alu 2 148 0 5 1613 211 28 0 53 chr4 134754839 134754877 -20875243 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1613 1230 54 0 13 chr4 134754881 134755031 -20875089 - B1_Mus1 SINE Alu 0 148 1 5 1613 341 118 0 0 chr4 134755039 134755090 -20875030 - HAL1-3A_ME LINE L1 -833 2025 1975 5 1613 501 247 0 0 chr4 134755092 134755325 -20874795 + (TG)n Simple_repeat Simple_repeat 1 233 0 5 1613 695 283 11 22 chr4 134755343 134755527 -20874593 - B3A SINE B2 -16 182 1 5 1613 1022 113 0 0 chr4 134755941 134756082 -20874038 + B1_Mus1 SINE Alu 1 141 -7 5 1613 2303 62 58 0 chr4 134756092 134756401 -20873719 + L1_Mus3 LINE L1 6309 6635 -3 5 1613 1524 162 0 31 chr4 134756412 134756705 -20873415 + RLTR15 LTR ERVK 76 359 0 5 1613 888 208 77 0 chr4 134756707 134756890 -20873230 - B3 SINE B2 -19 197 1 5 1613 1078 138 193 0 chr4 134757236 134757417 -20872703 + B3 SINE B2 1 216 0 5 1613 266 268 14 14 chr4 134758264 134758336 -20871784 + ID4 SINE ID 6 77 -6 5 1613 387 0 0 0 chr4 134758359 134758402 -20871718 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1613 293 312 165 0 chr4 134758489 134758534 -20871586 + RSINE1 SINE B4 33 79 -86 5 1613 630 0 0 0 chr4 134758534 134758604 -20871516 + (GAA)n Simple_repeat Simple_repeat 3 72 0 5 1613 293 312 165 0 chr4 134758604 134758667 -20871453 + RSINE1 SINE B4 80 158 -7 5 1613 239 0 32 0 chr4 134758886 134758917 -20871203 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 5 1613 306 0 0 0 chr4 134759024 134759058 -20871062 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1613 285 119 0 0 chr4 134759081 134759123 -20870997 - MT2B LTR ERVL -376 225 184 5 1613 210 71 0 0 chr4 134759543 134759571 -20870549 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 5 1613 212 86 29 0 chr4 134759651 134759686 -20870434 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1613 216 0 0 0 chr4 134760546 134760570 -20869550 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1613 361 327 48 24 chr4 134760676 134760842 -20869278 - B4A SINE B4 -6 286 117 5 1613 261 0 0 0 chr4 134760967 134760996 -20869124 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1613 1208 61 0 0 chr4 134761021 134761168 -20868952 - B1_Mus1 SINE Alu 0 148 2 5 1613 199 259 22 11 chr4 134761477 134761567 -20868553 + GA-rich Low_complexity Low_complexity 3 93 0 5 1613 301 230 26 130 chr4 134761582 134761614 -20868506 + MT2B LTR ERVL 136 155 -446 5 1613 565 188 0 3 chr4 134761614 134761723 -20868397 + B1_Mur3 SINE Alu 1 107 -13 5 1613 351 285 83 15 chr4 134761723 134761746 -20868374 + B4A SINE B4 86 226 -66 5 1613 193 307 67 0 chr4 134762736 134762811 -20867309 + MIRc SINE MIR 71 150 -118 5 1613 723 242 121 5 chr4 134763154 134763353 -20866767 - ID_B1 SINE B4 -2 222 1 5 1613 386 284 20 13 chr4 134763568 134763718 -20866402 - L1MEg LINE L1 -4890 1194 1044 5 1613 259 307 61 0 chr4 134764002 134764116 -20866004 - L1MB7 LINE L1 -249 5935 5815 5 1613 192 167 39 62 chr4 134764389 134764517 -20865603 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 1613 310 164 32 16 chr4 134764580 134764642 -20865478 - HAL1-3A_ME LINE L1 -840 2018 1956 5 1613 261 315 21 11 chr4 134764776 134764869 -20865251 - Lx9 LINE L1 -1749 5895 5802 5 1613 551 292 48 17 chr4 134764992 134765222 -20864898 - L1MA5A LINE L1 -469 5828 5592 5 1613 198 0 0 0 chr4 134765243 134765265 -20864855 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1613 1100 36 48 35 chr4 134765267 134765412 -20864708 - B1_Mm SINE Alu 0 147 1 5 1613 190 56 56 0 chr4 134765419 134765455 -20864665 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1613 290 184 87 54 chr4 134765456 134765548 -20864572 - L1MC LINE L1 -745 5599 5505 5 1613 252 349 9 44 chr4 134765549 134765632 -20864488 - B3A SINE B2 -87 111 32 5 1613 558 0 0 0 chr4 134765632 134765694 -20864426 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1613 252 349 9 44 chr4 134765694 134765724 -20864396 - B3A SINE B2 -167 31 2 5 1613 404 295 0 24 chr4 134765733 134765858 -20864262 - L1MA5A LINE L1 -811 5486 5365 5 1613 798 144 102 65 chr4 134765858 134766044 -20864076 - B2_Mm2 SINE B2 -2 193 1 5 1613 422 323 131 40 chr4 134766185 134766216 -20863904 - L1M4c LINE L1 -800 5582 5551 5 1613 420 203 0 0 chr4 134766216 134766285 -20863835 - ID2 SINE ID -13 70 2 5 1613 1223 292 121 18 chr4 134766285 134766505 -20863615 - L1M4c LINE L1 -832 5550 5317 5 1613 619 256 211 83 chr4 134766505 134766841 -20863279 + MTE2a LTR MaLR 1 379 0 5 1613 1223 285 119 13 chr4 134766841 134767219 -20862901 - L1M4c LINE L1 -1056 5323 4893 5 1613 1220 62 0 0 chr4 134767333 134767479 -20862641 - B1_Mus1 SINE Alu -1 147 2 5 1613 356 313 161 25 chr4 134768027 134768405 -20861715 - L1M4c LINE L1 -3972 2111 1517 5 1613 397 230 101 29 chr4 134768461 134768505 -20861615 - B4A SINE B4 -21 271 226 6 1613 195 42 0 0 chr4 134768505 134768529 -20861591 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 6 1613 397 230 101 29 chr4 134768529 134768623 -20861497 - B4A SINE B4 -67 225 125 6 1613 874 193 124 5 chr4 134769077 134769270 -20860850 - B3 SINE B2 0 216 1 6 1613 291 296 110 9 chr4 134769579 134769688 -20860432 + B3A SINE B2 68 187 -11 6 1613 23 0 0 0 chr4 134769893 134769916 -20860204 + AT_rich Low_complexity Low_complexity 1 23 0 6 1613 618 234 21 28 chr4 134771657 134771802 -20858318 + B1F2 SINE Alu 1 144 -5 6 1613 283 253 38 0 chr4 134772155 134772234 -20857886 + ID4 SINE ID 2 83 0 6 1613 387 278 55 8 chr4 134773295 134773422 -20856698 + B3A SINE B2 40 172 -26 6 1613 1471 49 49 0 chr4 134773650 134773835 -20856285 - B2_Mm2 SINE B2 0 195 2 6 1613 26 0 0 0 chr4 134774006 134774032 -20856088 + AT_rich Low_complexity Low_complexity 1 26 0 6 1613 253 103 17 33 chr4 134774032 134774092 -20856028 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 6 1613 299 240 130 37 chr4 134774167 134774275 -20855845 - ID_B1 SINE B4 0 224 107 6 1613 228 288 186 31 chr4 134774275 134774296 -20855824 - B1F SINE Alu 0 149 1 6 1613 476 114 0 0 chr4 134775252 134775322 -20854798 - B1_Mus1 SINE Alu -50 98 29 6 1613 961 194 160 5 chr4 134775419 134775606 -20854514 - B3 SINE B2 0 216 1 6 1613 31 0 0 0 chr4 134775866 134775897 -20854223 + AT_rich Low_complexity Low_complexity 1 31 0 6 1613 297 250 31 0 chr4 134776273 134776369 -20853751 - B1F SINE Alu -38 111 13 6 1613 842 250 123 17 chr4 134776527 134776872 -20853248 + Lx8 LINE L1 7047 7473 0 6 1613 231 283 0 0 chr4 134777026 134777079 -20853041 + ID4 SINE ID 7 59 -24 6 1613 264 30 0 0 chr4 134777323 134777356 -20852764 + (TCTCTG)n Simple_repeat Simple_repeat 3 35 0 6 1613 414 0 0 0 chr4 134777641 134777687 -20852433 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1613 297 0 0 0 chr4 134778745 134778778 -20851342 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1613 255 152 0 0 chr4 134780596 134780642 -20849478 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1613 297 288 30 0 chr4 134780653 134780719 -20849401 - PB1D10 SINE Alu -27 90 23 6 1613 275 130 19 0 chr4 134780950 134781004 -20849116 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1613 888 154 50 39 chr4 134781084 134781266 -20848854 + B2_Mm2 SINE B2 9 192 -3 6 1613 1617 47 0 10 chr4 134781555 134781750 -20848370 - B2_Mm1t SINE B2 0 193 1 6 1613 490 283 60 80 chr4 134782293 134782493 -20847627 + B3A SINE B2 1 196 -2 6 1613 297 160 243 50 chr4 134782980 134783083 -20847037 + B1_Mur2 SINE Alu 1 141 -8 6 1613 257 300 21 62 chr4 134783029 134783125 -20846995 + B4 SINE B4 164 255 -37 6 1613 862 197 119 0 chr4 134783130 134783323 -20846797 + B3 SINE B2 1 216 0 6 1613 365 214 34 120 chr4 134783357 134783474 -20846646 + PB1D10 SINE Alu 3 109 -8 6 1613 1439 78 10 5 chr4 134783552 134783746 -20846374 + B2_Mm2 SINE B2 1 195 0 6 1613 306 276 97 21 chr4 134783945 134784088 -20846032 - B1F SINE Alu -16 295 11 6 1613 189 0 0 0 chr4 134784207 134784228 -20845892 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 6 1613 345 47 0 0 chr4 134784438 134784481 -20845639 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 6 1613 1463 58 21 11 chr4 134784530 134784721 -20845399 + B2_Mm2 SINE B2 3 195 0 6 1613 264 174 333 44 chr4 134784761 134784875 -20845245 + B4 SINE B4 77 223 -69 6 1613 443 182 140 10 chr4 134784776 134784876 -20845244 + PB1D9 SINE Alu 7 119 -1 6 1613 231 279 0 0 chr4 134785546 134785607 -20844513 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1613 22 0 0 0 chr4 134785770 134785792 -20844328 + AT_rich Low_complexity Low_complexity 1 22 0 6 1613 1198 68 0 0 chr4 134786156 134786304 -20843816 + B1_Mus1 SINE Alu 1 148 0 6 1613 399 127 0 0 chr4 134786318 134786381 -20843739 + (GGA)n Simple_repeat Simple_repeat 3 65 0 6 1613 201 256 0 60 chr4 134787064 134787147 -20842973 + A-rich Low_complexity Low_complexity 2 79 0 6 1613 477 0 0 0 chr4 134787413 134787466 -20842654 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1613 641 178 10 0 chr4 134787751 134787852 -20842268 - B1_Mur3 SINE Alu -2 147 46 6 1613 478 195 229 0 chr4 134787966 134788084 -20842036 + B3A SINE B2 1 145 -53 6 1613 1197 81 0 0 chr4 134788149 134788297 -20841823 - B1_Mus1 SINE Alu 0 148 1 6 1613 393 240 89 10 chr4 134788837 134788938 -20841182 - PB1D10 SINE Alu -8 109 1 6 1613 337 265 83 32 chr4 134789374 134789530 -20840590 + B4 SINE B4 1 164 -128 6 1613 1173 165 24 19 chr4 134789552 134789762 -20840358 + B3 SINE B2 1 211 -5 6 1613 1288 94 15 50 chr4 134789798 134789999 -20840121 + B2_Mm2 SINE B2 1 194 -1 6 1613 369 131 0 0 chr4 134790003 134790064 -20840056 + (GGA)n Simple_repeat Simple_repeat 1 61 0 6 1613 186 191 0 0 chr4 134790141 134790188 -20839932 + T-rich Low_complexity Low_complexity 2 48 0 6 1613 1170 82 0 0 chr4 134790189 134790335 -20839785 - B1_Mus1 SINE Alu -1 147 2 6 1613 950 169 21 16 chr4 134790451 134790637 -20839483 - B2_Mm2 SINE B2 -8 187 1 6 1613 504 139 180 276 chr4 134790658 134790897 -20839223 - B3 SINE B2 0 216 1 6 1613 283 171 62 68 chr4 134790930 134791033 -20839087 - PB1D9 SINE Alu 0 147 39 6 1613 330 311 0 0 chr4 134793084 134793158 -20836962 - PB1D7 SINE Alu -9 111 38 6 1613 669 193 24 121 chr4 134793227 134793392 -20836728 + B1_Mur4 SINE Alu 1 149 -1 6 1613 215 296 141 0 chr4 134793580 134793651 -20836469 + ID4_ SINE ID 1 81 -2 6 1613 925 168 23 40 chr4 134793736 134793910 -20836210 - B3 SINE B2 -3 213 43 6 1613 308 272 49 0 chr4 134793926 134794007 -20836113 - B4A SINE B4 -77 215 131 6 1613 967 232 128 39 chr4 134795159 134795495 -20834625 + ORR1D2 LTR MaLR 1 366 -4 6 1613 577 168 7 118 chr4 134795539 134795674 -20834446 - B1_Mus1 SINE Alu -26 122 3 6 1613 1038 90 21 0 chr4 134795773 134795918 -20834202 + B1_Mus1 SINE Alu 1 148 0 6 1613 705 228 15 0 chr4 134796130 134796266 -20833854 + ID_B1 SINE B4 85 222 -2 6 1613 324 0 0 0 chr4 134796442 134796478 -20833642 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1613 29 28 0 0 chr4 134796989 134797025 -20833095 + AT_rich Low_complexity Low_complexity 1 36 0 6 1613 672 185 171 17 chr4 134797142 134797318 -20832802 + B3 SINE B2 1 203 -13 6 1613 369 0 0 0 chr4 134797504 134797545 -20832575 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1613 27 29 0 0 chr4 134797551 134797585 -20832535 + AT_rich Low_complexity Low_complexity 1 34 0 6 1613 318 284 129 9 chr4 134797991 134798201 -20831919 + L1MDa LINE L1 1141 1375 -5258 6 1613 230 247 89 25 chr4 134798451 134798530 -20831590 + ORR1D2 LTR MaLR 287 370 0 6 1613 303 280 83 74 chr4 134798532 134798640 -20831480 + L1MDa LINE L1 1373 1481 -5152 6 1613 833 171 50 0 chr4 134798643 134798783 -20831337 + B1_Mur2 SINE Alu 1 147 -2 6 1613 262 337 36 0 chr4 134798826 134798909 -20831211 + B1F SINE Alu 10 95 -54 6 1613 225 354 14 112 chr4 134798827 134798970 -20831150 + MT2B2 LTR ERVL 175 303 -281 6 1613 307 303 71 0 chr4 134799477 134799576 -20830544 + B1F2 SINE Alu 5 110 -39 6 1613 387 294 36 42 chr4 134799578 134799595 -20830525 + CYRA11_Mm Unknown Y-chromosome 155 170 -447 6 1613 1022 136 28 17 chr4 134799595 134799775 -20830345 - URR1A DNA MER1_type 0 226 45 6 1613 251 148 37 0 chr4 134799860 134799914 -20830206 + GA-rich Low_complexity Low_complexity 4 59 0 6 1613 1140 101 0 0 chr4 134799977 134800125 -20829995 + B1_Mus1 SINE Alu 1 148 0 6 1613 181 311 0 0 chr4 134800183 134800228 -20829892 + L2c LINE L2 3329 3373 -14 6 1613 247 297 0 0 chr4 134800260 134800324 -20829796 + ID2 SINE ID 4 67 -16 6 1613 673 154 161 58 chr4 134800579 134800890 -20829230 + RMER17C LTR ERVK 56 398 -12 6 1613 310 226 133 0 chr4 134800958 134801053 -20829067 + B1_Mm SINE Alu 10 145 -2 6 1613 478 271 37 44 chr4 134801334 134801469 -20828651 + RSINE1 SINE B4 29 162 -3 6 1613 256 167 35 60 chr4 134801681 134801774 -20828346 + B1_Mur1 SINE Alu 61 150 0 6 1613 440 191 108 9 chr4 134802595 134802706 -20827414 + B1_Mur1 SINE Alu 11 132 -17 6 1613 348 24 0 0 chr4 134802708 134802749 -20827371 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 6 1613 471 270 183 6 chr4 134803636 134803811 -20826309 + ID_B1 SINE B4 1 206 -18 6 1613 216 0 0 0 chr4 134803840 134803864 -20826256 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1613 1255 75 37 16 chr4 134804775 134804966 -20825154 - B2_Mm2 SINE B2 0 195 1 6 1613 776 104 9 24 chr4 134804969 134805114 -20825006 - B1_Mur4 SINE Alu 0 150 17 6 1613 310 315 72 26 chr4 134805122 134805275 -20824845 + MIRc SINE MIR 44 203 -65 6 1613 369 0 0 0 chr4 134805702 134805743 -20824377 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1613 383 262 56 0 chr4 134806299 134806425 -20823695 + B1F1 SINE Alu 5 137 -12 6 1613 416 241 25 8 chr4 134806441 134806559 -20823561 + PB1D7 SINE Alu 17 134 -15 6 1613 365 230 46 0 chr4 134806596 134806683 -20823437 + PB1D7 SINE Alu 29 119 -1 6 1613 315 218 0 93 chr4 134806689 134806775 -20823345 + B3A SINE B2 18 95 -103 6 1613 327 192 38 25 chr4 134806943 134807023 -20823097 + ID2 SINE ID 1 81 -2 7 1613 241 358 0 0 chr4 134807023 134807104 -20823016 + ID_B1 SINE B4 141 221 -3 7 1613 693 161 86 14 chr4 134807115 134807254 -20822866 + B1_Mur4 SINE Alu 2 150 0 7 1613 806 217 2 32 chr4 134807470 134807663 -20822457 - B3 SINE B2 -15 178 1 7 1613 1529 180 133 24 chr4 134807828 134808204 -20821916 + RMER16 LTR ERVK 117 533 0 7 1613 418 246 114 14 chr4 134808686 134808821 -20821299 - ID_B1 SINE B4 -35 257 110 7 1613 288 53 0 0 chr4 134808821 134808859 -20821261 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1613 735 307 145 15 chr4 134809324 134809648 -20820472 - MTEa LTR MaLR -13 366 1 7 1613 488 299 27 20 chr4 134809958 134810105 -20820015 + B1F2 SINE Alu 1 148 -1 7 1613 596 226 67 8 chr4 134810139 134810273 -20819847 + B1F SINE Alu 2 143 -6 7 1613 430 314 209 0 chr4 134811379 134811599 -20818521 + MIRb SINE MIR 2 267 -1 7 1613 348 209 77 103 chr4 134811838 134811851 -20818269 + MT2B LTR ERVL 150 159 -442 7 1613 548 262 42 7 chr4 134811851 134811993 -20818127 + B1_Mus2 SINE Alu 1 147 0 7 1613 314 221 71 0 chr4 134812018 134812122 -20817998 + B1F2 SINE Alu 1 117 0 7 1613 1724 21 0 0 chr4 134812173 134812365 -20817755 + B2_Mm1a SINE B2 2 193 0 7 1613 729 270 116 8 chr4 134813091 134813341 -20816779 - B4 SINE B4 -14 278 2 7 1613 324 267 58 0 chr4 134813529 134813615 -20816505 + PB1D10 SINE Alu 27 117 0 7 1613 189 107 0 0 chr4 134813615 134813643 -20816477 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 7 1613 378 61 0 0 chr4 134813641 134813690 -20816430 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 7 1613 2309 60 10 3 chr4 134813714 134814017 -20816103 - L1_Mus3 LINE L1 -4 6634 6330 7 1613 316 280 0 37 chr4 134814107 134814200 -20815920 - ID4 SINE ID -60 92 3 7 1613 355 248 120 0 chr4 134815218 134815343 -20814777 + B1F SINE Alu 1 140 -9 7 1613 207 0 0 0 chr4 134815438 134815461 -20814659 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 7 1613 249 220 0 78 chr4 134815508 134815572 -20814548 - PB1D9 SINE Alu -12 108 50 7 1613 573 227 201 17 chr4 134815584 134815692 -20814428 - B3 SINE B2 0 216 102 7 1613 4558 45 0 11 chr4 134815692 134816249 -20813871 + L1Md_F2 LINE L1 6032 6582 0 7 1613 573 227 201 17 chr4 134816249 134816319 -20813801 - B3 SINE B2 -115 101 5 7 1613 187 423 48 31 chr4 134816714 134816941 -20813179 - L2b LINE L2 -1 3374 3144 7 1613 956 85 128 47 chr4 134817022 134817180 -20812940 + B2_Mm1a SINE B2 3 167 -26 7 1613 207 0 0 0 chr4 134817180 134817203 -20812917 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1613 956 85 128 47 chr4 134817203 134817216 -20812904 + B2_Mm1a SINE B2 168 186 -7 7 1613 226 236 37 179 chr4 134817828 134817962 -20812158 - B1F2 SINE Alu -29 120 6 7 1613 633 216 97 56 chr4 134817857 134818053 -20812067 - ID_B1 SINE B4 -20 204 1 7 1613 506 204 28 9 chr4 134818502 134818611 -20811509 - B3 SINE B2 -68 148 38 7 1613 310 208 27 14 chr4 134818638 134818711 -20811409 + B3 SINE B2 2 75 -141 7 1613 384 273 0 0 chr4 134818705 134818793 -20811327 + ID_B1 SINE B4 137 224 0 7 1613 279 234 184 28 chr4 134818811 134818952 -20811168 + RSINE1 SINE B4 3 165 0 7 1613 351 251 4 102 chr4 134818987 134819103 -20811017 + B1F SINE Alu 1 106 -43 7 1613 826 99 0 15 chr4 134819133 134819266 -20810854 + (GGGAGA)n Simple_repeat Simple_repeat 6 136 0 7 1613 621 92 0 11 chr4 134819278 134819366 -20810754 - B1_Mus1 SINE Alu -30 118 32 7 1613 300 197 73 29 chr4 134819306 134819374 -20810746 - 4.5SRNA scRNA scRNA -8 86 16 7 1613 401 296 69 64 chr4 134819631 134819804 -20810316 - ID_B1 SINE B4 -6 218 45 7 1613 314 289 0 50 chr4 134819778 134819858 -20810262 - PB1D10 SINE Alu -41 76 1 7 1613 384 40 0 0 chr4 134819859 134819909 -20810211 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1613 249 333 11 32 chr4 134819919 134820012 -20810108 - ID_B1 SINE B4 -52 172 82 7 1613 240 135 0 0 chr4 134820382 134820419 -20809701 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 7 1613 860 129 42 21 chr4 134820438 134820580 -20809540 + B1_Mur4 SINE Alu 5 149 -1 7 1613 1586 52 0 5 chr4 134820611 134820804 -20809316 + B2_Mm2 SINE B2 2 193 -2 7 1613 276 224 0 0 chr4 134821678 134821745 -20808375 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1613 1265 20 0 13 chr4 134822026 134822175 -20807945 + B1_Mus2 SINE Alu 1 147 0 7 1613 222 238 0 0 chr4 134822211 134822253 -20807867 + PB1 SINE Alu 21 62 -65 7 1613 313 311 79 90 chr4 134822240 134822268 -20807852 + B4 SINE B4 43 69 -223 7 1613 1136 143 70 25 chr4 134822268 134822469 -20807651 + B3 SINE B2 1 210 -6 7 1613 313 311 79 90 chr4 134822469 134822489 -20807631 + B4 SINE B4 70 217 -75 7 1613 649 211 78 0 chr4 134822489 134822617 -20807503 + B1_Mur1 SINE Alu 3 140 -9 7 1613 254 248 20 54 chr4 134823963 134824062 -20806058 - B1F SINE Alu -12 137 25 7 1613 484 244 2 1 chr4 134824273 134824371 -20805749 + PB1D7 SINE Alu 24 122 -27 7 1613 1010 55 0 30 chr4 134824584 134824716 -20805404 + B2_Mm2 SINE B2 2 129 -66 7 1613 553 227 53 0 chr4 134824738 134824870 -20805250 + B1F SINE Alu 11 149 0 7 1613 228 122 0 0 chr4 134824872 134824913 -20805207 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1613 505 279 30 136 chr4 134824978 134825214 -20804906 + B3A SINE B2 4 214 -2 7 1613 273 296 115 20 chr4 134825304 134825452 -20804668 + RSINE1 SINE B4 4 165 0 7 1613 340 228 117 55 chr4 134825500 134825619 -20804501 + PB1D7 SINE Alu 9 117 0 7 1613 306 240 53 13 chr4 134826158 134826234 -20803886 - ID4 SINE ID -4 79 1 7 1613 618 148 30 0 chr4 134826350 134826451 -20803669 - B1_Mur1 SINE Alu -8 141 38 7 1613 377 211 93 37 chr4 134826592 134826700 -20803420 + PB1D7 SINE Alu 2 115 -5 7 1613 1282 171 5 5 chr4 134826860 134827072 -20803048 - URR1B DNA MER1_type -13 212 1 7 1613 231 167 0 0 chr4 134827714 134827756 -20802364 + T-rich Low_complexity Low_complexity 1 42 0 7 1613 314 191 116 11 chr4 134827784 134827879 -20802241 - B1F SINE Alu -41 108 4 7 1613 288 290 26 53 chr4 134827919 134828032 -20802088 - ID_B1 SINE B4 -11 213 104 7 1613 192 125 0 0 chr4 134828578 134828610 -20801510 + (CTCG)n Simple_repeat Simple_repeat 3 34 0 7 1613 271 278 92 10 chr4 134829892 134829990 -20800130 + PB1D10 SINE Alu 2 107 -10 7 1613 351 0 0 0 chr4 134829990 134830029 -20800091 + (TAA)n Simple_repeat Simple_repeat 2 40 0 7 1613 454 296 8 23 chr4 134830029 134830157 -20799963 + RSINE1 SINE B4 4 129 -36 7 1613 297 0 0 0 chr4 134830166 134830199 -20799921 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1613 230 176 52 121 chr4 134830216 134830274 -20799846 - B1_Mus1 SINE Alu -88 60 7 7 1613 943 136 0 13 chr4 134830301 134830450 -20799670 - B1_Mus1 SINE Alu 0 148 2 7 1613 1032 239 10 0 chr4 134830464 134830665 -20799455 + ID_B1 SINE B4 13 215 -9 7 1613 263 188 62 0 chr4 134830622 134830670 -20799450 + PB1D7 SINE Alu 66 116 -4 7 1613 183 129 0 0 chr4 134831417 134831448 -20798672 + (GGA)n Simple_repeat Simple_repeat 1 31 0 7 1613 583 291 91 14 chr4 134831586 134831861 -20798259 + L2a LINE L2 2932 3227 -199 7 1613 393 39 0 0 chr4 134831862 134831913 -20798207 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1613 466 297 45 110 chr4 134831963 134832209 -20797911 + MTD LTR MaLR 29 258 -163 7 1613 216 111 0 0 chr4 134832209 134832245 -20797875 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1613 1205 62 0 0 chr4 134832245 134832391 -20797729 - B1_Mus1 SINE Alu 0 148 3 7 1613 611 220 80 7 chr4 134832392 134832543 -20797577 + MTD LTR MaLR 244 405 -14 7 1613 311 275 106 21 chr4 134832659 134832800 -20797320 - RMER15 LTR ERVL -1 574 422 7 1613 333 281 10 40 chr4 134833183 134833283 -20796837 + PB1D7 SINE Alu 22 118 -2 7 1613 205 325 79 31 chr4 134833832 134833959 -20796161 - MIRc SINE MIR -75 193 61 7 1613 196 288 0 57 chr4 134834272 134834342 -20795778 + L2 LINE L2 2750 2815 -604 7 1613 34 24 0 0 chr4 134834342 134834383 -20795737 + AT_rich Low_complexity Low_complexity 1 41 0 7 1613 837 205 140 5 chr4 134834383 134834569 -20795551 - B3 SINE B2 -4 212 2 7 1613 673 276 25 77 chr4 134834569 134834765 -20795355 - B3A SINE B2 -3 195 10 7 1613 476 169 0 0 chr4 134834767 134834844 -20795276 + ORR1C2 LTR MaLR 304 380 -4 7 1613 309 204 0 0 chr4 134834853 134834907 -20795213 + B1_Mus2 SINE Alu 54 107 -40 7 1613 237 246 13 80 chr4 134834854 134834929 -20795191 + MT2B LTR ERVL 212 281 -320 7 1613 287 222 0 0 chr4 134835040 134835094 -20795026 + B1_Mus2 SINE Alu 54 107 -40 7 1613 181 302 0 19 chr4 134835138 134835192 -20794928 + L2a LINE L2 3325 3377 -10 7 1613 1194 61 0 7 chr4 134835413 134835561 -20794559 + B1_Mm SINE Alu 1 147 0 7 1613 2450 60 6 0 chr4 134835766 134836083 -20794037 + MTB LTR MaLR 1 319 -81 7 1613 553 226 0 0 chr4 134836080 134836186 -20793934 - B3A SINE B2 -92 106 1 7 1613 264 301 71 61 chr4 134836258 134836325 -20793795 + MIRc SINE MIR 44 117 -151 7 1613 3164 63 2 41 chr4 134836325 134836404 -20793716 - MTB LTR MaLR 0 400 338 7 1613 762 146 40 170 chr4 134836404 134836627 -20793493 - B2_Mm2 SINE B2 0 195 2 7 1613 3164 63 2 41 chr4 134836627 134836963 -20793157 - MTB LTR MaLR -63 337 1 7 1613 264 301 71 61 chr4 134836963 134836994 -20793126 + MIRc SINE MIR 118 143 -125 7 1613 31 19 0 53 chr4 134837203 134837260 -20792860 + AT_rich Low_complexity Low_complexity 1 54 0 7 1613 432 270 58 14 chr4 134837270 134837409 -20792711 + ID_B1 SINE B4 2 146 -78 8 1613 253 315 62 9 chr4 134837437 134837549 -20792571 + PB1D7 SINE Alu 3 120 0 8 1613 225 0 0 0 chr4 134837554 134837579 -20792541 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1613 567 246 82 46 chr4 134837579 134837664 -20792456 + B4 SINE B4 2 93 -199 8 1613 794 103 8 0 chr4 134837664 134837781 -20792339 + B1_Mus2 SINE Alu 2 119 -28 8 1613 938 124 7 7 chr4 134837778 134837932 -20792188 + B2_Mm1t SINE B2 40 193 0 8 1613 1028 88 63 0 chr4 134837930 134838089 -20792031 + B2_Mm2 SINE B2 27 195 0 8 1613 414 0 0 0 chr4 134838221 134838267 -20791853 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1613 217 369 0 15 chr4 134838284 134838350 -20791770 + B3 SINE B2 15 79 -137 8 1613 199 0 31 31 chr4 134838402 134838434 -20791686 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1613 389 189 214 9 chr4 134838434 134838546 -20791574 - B1_Mus2 SINE Alu -12 135 1 8 1613 225 94 0 0 chr4 134838951 134838983 -20791137 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1613 234 229 0 0 chr4 134839270 134839318 -20790802 - L2a LINE L2 0 3426 3379 8 1613 280 250 122 24 chr4 134839418 134839500 -20790620 + RSINE1 SINE B4 6 95 -70 8 1613 545 237 9 0 chr4 134839610 134839724 -20790396 + PB1D9 SINE Alu 1 115 -5 8 1613 26 0 0 0 chr4 134839727 134839753 -20790367 + AT_rich Low_complexity Low_complexity 1 26 0 8 1613 1234 54 0 0 chr4 134839755 134839902 -20790218 + B1_Mus1 SINE Alu 2 148 0 8 1613 1124 184 10 19 chr4 134839907 134840112 -20790008 - B3 SINE B2 -13 203 1 8 1613 882 163 7 20 chr4 134840325 134840475 -20789645 - B1_Mur3 SINE Alu 0 149 2 8 1613 495 238 30 45 chr4 134840502 134840634 -20789486 + B3 SINE B2 1 130 -86 8 1613 23 54 0 0 chr4 134840717 134840754 -20789366 + AT_rich Low_complexity Low_complexity 1 37 0 8 1613 245 211 135 40 chr4 134840755 134840829 -20789291 + PB1D10 SINE Alu 37 117 0 8 1613 308 206 0 16 chr4 134841038 134841102 -20789018 + HAL1-2a_MD LINE L1 2325 2387 -637 8 1613 1400 52 0 17 chr4 134841149 134841165 -20788955 - B2_Mm1a SINE B2 -19 174 161 8 1613 216 86 0 0 chr4 134841165 134841200 -20788920 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 8 1613 1400 52 0 17 chr4 134841200 134841360 -20788760 - B2_Mm1a SINE B2 -33 160 1 8 1613 279 299 54 54 chr4 134841394 134841578 -20788542 + Lx8 LINE L1 7035 7218 -255 8 1613 349 283 118 42 chr4 134841812 134841956 -20788164 + RMER15 LTR ERVL 405 559 -16 8 1613 321 331 34 27 chr4 134842020 134842169 -20787951 - MIRb SINE MIR -116 152 3 8 1613 245 317 120 26 chr4 134843445 134843678 -20786442 + L1MC4 LINE L1 7309 7563 -479 8 1613 517 248 19 0 chr4 134843713 134843818 -20786302 + PB1D10 SINE Alu 2 108 -9 8 1613 568 217 0 50 chr4 134843891 134844012 -20786108 + B1F SINE Alu 1 115 -34 8 1613 354 91 0 0 chr4 134844394 134844449 -20785671 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1613 579 221 92 123 chr4 134844470 134844697 -20785423 + ID_B1 SINE B4 5 224 0 8 1613 367 297 220 10 chr4 134844700 134845013 -20785107 + Lx8 LINE L1 6968 7346 -127 8 1613 988 120 14 0 chr4 134845013 134845155 -20784965 + B1_Mur4 SINE Alu 1 144 -6 8 1613 1238 62 89 11 chr4 134845161 134845340 -20784780 + B2_Mm2 SINE B2 2 194 -1 8 1613 344 223 258 31 chr4 134845353 134845450 -20784670 + PB1D9 SINE Alu 2 120 0 8 1613 278 185 123 0 chr4 134845558 134845623 -20784497 - B4A SINE B4 -4 288 216 8 1613 240 218 11 33 chr4 134845654 134845744 -20784376 + (TAA)n Simple_repeat Simple_repeat 1 88 0 8 1613 1199 54 7 0 chr4 134845794 134845941 -20784179 - B1_Mus1 SINE Alu 0 148 1 8 1613 1544 53 0 21 chr4 134845950 134846141 -20783979 - B2_Mm1t SINE B2 -5 188 2 8 1613 2062 131 96 11 chr4 134846632 134846988 -20783132 - RMER19B LTR ERVK -27 875 490 8 1613 1663 136 19 156 chr4 134846996 134847362 -20782758 - RMER19B LTR ERVK -584 318 3 8 1613 862 217 133 70 chr4 134847362 134847702 -20782418 - B4A SINE B4 -5 287 1 8 1613 192 273 169 0 chr4 134848041 134848118 -20782002 + MIR SINE MIR 31 120 -142 8 1613 490 222 286 23 chr4 134848312 134848487 -20781633 - ID_B1 SINE B4 -3 221 1 8 1613 186 43 0 0 chr4 134849001 134849024 -20781096 + (TCCCC)n Simple_repeat Simple_repeat 3 25 0 8 1613 484 116 198 0 chr4 134849069 134849155 -20780965 - B1_Mus2 SINE Alu -1 146 44 8 1613 366 254 76 48 chr4 134849181 134849326 -20780794 - B1F SINE Alu 0 149 1 8 1613 513 0 0 0 chr4 134849329 134849386 -20780734 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1613 717 258 14 3 chr4 134850115 134850272 -20779848 - B3A SINE B2 -29 166 1 8 1613 369 109 0 0 chr4 134850272 134850327 -20779793 + (TTTC)n Simple_repeat Simple_repeat 4 58 0 8 1613 1309 98 22 5 chr4 134850329 134850514 -20779606 - B2_Mm2 SINE B2 -6 189 2 8 1613 307 297 196 22 chr4 134850723 134850902 -20779218 - RMER21A LTR ERV1 -265 682 473 8 1613 381 182 30 14 chr4 134851080 134851160 -20778960 - B3 SINE B2 -109 86 5 8 1613 338 125 0 256 chr4 134851428 134851460 -20778660 + B3 SINE B2 10 30 -186 8 1613 1336 73 39 16 chr4 134851460 134851642 -20778478 + B2_Mm2 SINE B2 2 187 -8 8 1613 1210 29 0 0 chr4 134851650 134851786 -20778334 + B1_Mm SINE Alu 2 137 -10 8 1613 329 58 19 0 chr4 134851786 134851838 -20778282 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 8 1613 338 125 0 256 chr4 134851838 134851881 -20778239 + B3 SINE B2 31 72 -144 8 1613 1525 60 5 0 chr4 134852088 134852273 -20777847 + B2_Mm1t SINE B2 2 187 -6 8 1613 1738 85 85 39 chr4 134852399 134852680 -20777440 - ORR1A4 LTR MaLR 0 329 36 8 1613 409 245 69 63 chr4 134852859 134852909 -20777211 - B4 SINE B4 -31 261 87 8 1613 591 189 40 16 chr4 134852909 134853033 -20777087 - B1F2 SINE Alu -21 128 2 8 1613 219 211 70 0 chr4 134853402 134853459 -20776661 + C-rich Low_complexity Low_complexity 1 61 0 8 1613 410 333 15 15 chr4 134853469 134853600 -20776520 - B4 SINE B4 -68 224 94 8 1613 311 295 55 37 chr4 134854803 134854912 -20775208 - MIRb SINE MIR -8 260 150 8 1613 418 274 66 104 chr4 134855315 134855336 -20774784 - B4 SINE B4 -46 246 224 8 1613 1103 67 0 0 chr4 134855336 134855470 -20774650 - B1_Mus1 SINE Alu -14 134 1 8 1613 853 161 7 0 chr4 134855472 134855609 -20774511 - B1_Mus2 SINE Alu -3 144 7 8 1613 418 274 66 104 chr4 134855609 134855631 -20774489 - B4 SINE B4 -69 221 71 8 1613 360 236 167 11 chr4 134855634 134855724 -20774396 - PB1D9 SINE Alu 0 120 17 8 1613 653 276 0 14 chr4 134855738 134855885 -20774235 - ID_B1 SINE B4 -1 223 79 8 1613 189 224 119 17 chr4 134856353 134856412 -20773708 + MIR SINE MIR 82 146 -62 8 1613 2814 76 103 55 chr4 134856615 134857089 -20773031 - RLTR1B LTR ERV1 0 512 16 8 1613 408 221 146 23 chr4 134857090 134857220 -20772900 - B1F SINE Alu -1 148 3 8 1613 223 275 9 67 chr4 134857531 134857643 -20772477 + MIRc SINE MIR 91 192 -76 8 1613 384 184 50 155 chr4 134857672 134857833 -20772287 + B1F2 SINE Alu 6 149 0 8 1613 412 237 43 0 chr4 134857843 134857936 -20772184 + B4 SINE B4 5 101 -191 8 1613 460 275 148 0 chr4 134857939 134858081 -20772039 - B3A SINE B2 -34 164 2 8 1613 1154 58 0 0 chr4 134858112 134858250 -20771870 - B1_Mus1 SINE Alu -9 139 2 8 1613 294 256 26 0 chr4 134858258 134858336 -20771784 - B4A SINE B4 -212 80 1 8 1613 595 265 6 100 chr4 134858381 134858561 -20771559 - RSINE1 SINE B4 -2 163 1 8 1613 474 274 19 0 chr4 134858572 134858678 -20771442 - ID_B1 SINE B4 -31 193 86 8 1613 222 263 42 57 chr4 134858724 134858802 -20771318 - MIR SINE MIR -108 160 81 8 1613 315 0 0 0 chr4 134858807 134858842 -20771278 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1613 501 188 10 20 chr4 134858864 134858962 -20771158 - B1F1 SINE Alu -52 97 1 8 1613 285 256 0 68 chr4 134858962 134858990 -20771130 - B4A SINE B4 -208 84 63 8 1613 609 306 137 4 chr4 134859084 134859340 -20770780 - MLT1G3 LTR MaLR -210 385 96 8 1613 1321 100 21 5 chr4 134859489 134859680 -20770440 + B2_Mm2 SINE B2 1 194 -1 8 1613 1196 62 14 0 chr4 134859685 134859829 -20770291 + B1_Mus2 SINE Alu 2 147 0 8 1613 1396 96 5 0 chr4 134859941 134860128 -20769992 - B2_Mm1a SINE B2 -5 188 1 8 1613 483 198 0 42 chr4 134860128 134860223 -20769897 - RSINE1 SINE B4 -72 93 3 8 1613 443 176 30 23 chr4 134860232 134860346 -20769774 - B1_Mur1 SINE Alu 0 149 1 8 1613 974 125 35 7 chr4 134860375 134860503 -20769617 - B1_Mur4 SINE Alu -1 149 17 8 1613 219 69 0 0 chr4 134860503 134860532 -20769588 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1613 974 125 35 7 chr4 134860532 134860548 -20769572 - B1_Mur4 SINE Alu -134 16 1 8 1613 215 184 0 58 chr4 134860558 134860586 -20769534 + T-rich Low_complexity Low_complexity 23 49 0 8 1613 854 154 36 7 chr4 134860586 134860723 -20769397 - B1_Mm SINE Alu -6 141 1 8 1613 215 184 0 58 chr4 134860723 134860746 -20769374 + T-rich Low_complexity Low_complexity 1 22 0 8 1613 3442 33 8 0 chr4 134861085 134861478 -20768642 - MTA_Mm LTR MaLR 0 396 1 8 1613 538 277 13 57 chr4 134861758 134861777 -20768343 - ID_B1 SINE B4 -68 156 137 8 1613 3091 57 22 10 chr4 134861777 134862183 -20767937 - RLTR9F LTR ERVK -4 411 1 8 1613 538 277 13 57 chr4 134862183 134862320 -20767800 - ID_B1 SINE B4 -88 136 8 8 1613 270 257 33 14 chr4 134862331 134862421 -20767699 - B1F2 SINE Alu -57 92 1 8 1613 249 370 14 14 chr4 134862513 134862661 -20767459 - MIR3 SINE MIR -60 148 1 8 1613 250 338 0 0 chr4 134862749 134862829 -20767291 - MIRb SINE MIR -91 177 98 8 1613 550 222 0 182 chr4 134863972 134864148 -20765972 - B1_Mur3 SINE Alu -4 145 2 9 1613 517 277 145 47 chr4 134864213 134864406 -20765714 - ID_B1 SINE B4 -11 213 2 9 1613 197 178 0 22 chr4 134864418 134864464 -20765656 + CT-rich Low_complexity Low_complexity 2 46 0 9 1613 331 274 147 59 chr4 134864471 134864607 -20765513 - ID_B1 SINE B4 0 224 77 9 1613 894 115 56 21 chr4 134866124 134866266 -20763854 + B1_Mur4 SINE Alu 3 149 -1 9 1613 1278 69 127 0 chr4 134866865 134867038 -20763082 + B2_Mm2 SINE B2 1 195 0 9 1613 554 269 75 7 chr4 134867045 134867191 -20762929 + ID_B1 SINE B4 2 157 -67 9 1613 493 128 0 0 chr4 134867207 134867285 -20762835 + L1_Mus3 LINE L1 6440 6517 -121 9 1613 863 240 17 0 chr4 134867286 134867461 -20762659 + B3 SINE B2 31 208 -8 9 1613 1206 75 0 0 chr4 134867506 134867652 -20762468 - B1_Mus2 SINE Alu 0 147 2 9 1613 198 0 0 0 chr4 134867732 134867754 -20762366 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1613 921 43 0 0 chr4 134867754 134867869 -20762251 - B1_Mm SINE Alu 0 147 33 9 1613 802 114 16 11 chr4 134867898 134868042 -20762078 - B1_Mus1 SINE Alu -6 142 1 9 1613 260 190 0 21 chr4 134869144 134869191 -20760929 - MIR SINE MIR -58 150 108 9 1613 261 193 102 57 chr4 134869343 134869431 -20760689 + MIRb SINE MIR 106 197 -71 9 1613 932 139 35 7 chr4 134870117 134870262 -20759858 - B1_Mur3 SINE Alu 0 149 1 9 1613 1488 204 61 28 chr4 134871035 134871397 -20758723 + ORR1D1 LTR MaLR 1 374 0 9 1613 401 236 124 65 chr4 134871418 134871604 -20758516 - MTE2a LTR MaLR -84 295 99 9 1613 1299 105 5 21 chr4 134871611 134871805 -20758315 + B2_Mm1a SINE B2 3 193 0 9 1613 232 311 164 32 chr4 134871839 134872028 -20758092 + MLT1F LTR MaLR 261 474 -74 9 1613 889 190 0 0 chr4 134872187 134872329 -20757791 - B1_Mus1 SINE Alu -5 143 2 9 1613 515 238 0 0 chr4 134872378 134872479 -20757641 + B3 SINE B2 1 101 -115 9 1613 355 117 11 65 chr4 134872486 134872561 -20757559 - B2_Mm2 SINE B2 -95 121 47 9 1613 1136 126 17 11 chr4 134872627 134872804 -20757316 - B2_Mm1t SINE B2 -14 179 2 9 1613 246 325 11 46 chr4 134872815 134872902 -20757218 + B3 SINE B2 131 214 -2 9 1614 973 92 15 0 chr4 134873205 134873335 -20756785 + B1_Mur2 SINE Alu 18 149 0 9 1614 320 250 29 39 chr4 134873557 134873661 -20756459 + PB1D9 SINE Alu 2 104 -16 9 1614 664 205 115 60 chr4 134873671 134873853 -20756267 + B3 SINE B2 4 195 -21 9 1614 477 0 0 0 chr4 134873870 134873923 -20756197 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1614 443 227 11 0 chr4 134873923 134874011 -20756109 + ID_B1 SINE B4 136 224 0 9 1614 1357 78 62 0 chr4 134874183 134874362 -20755758 - B2_Mm2 SINE B2 -4 191 2 9 1614 353 214 0 152 chr4 134874407 134874506 -20755614 - B1_Mur1 SINE Alu -3 146 63 9 1614 247 272 54 72 chr4 134874547 134874658 -20755462 + MMAR1 DNA Mariner 140 248 -1038 9 1614 1030 101 0 0 chr4 134875267 134875406 -20754714 - B1_Mus2 SINE Alu 0 147 9 9 1614 629 200 216 54 chr4 134875423 134875608 -20754512 - B3 SINE B2 0 216 2 9 1614 332 150 12 24 chr4 134875718 134875800 -20754320 - Lx4A LINE L1 -29 7029 6949 9 1614 1223 54 0 20 chr4 134875900 134876050 -20754070 + B1_Mus1 SINE Alu 2 148 0 9 1614 23 0 0 0 chr4 134876454 134876477 -20753643 + AT_rich Low_complexity Low_complexity 1 23 0 9 1614 366 281 226 34 chr4 134877471 134877648 -20752472 - ID_B1 SINE B4 -8 216 6 9 1614 21 0 0 0 chr4 134877947 134877968 -20752152 + AT_rich Low_complexity Low_complexity 1 21 0 9 1614 240 219 0 0 chr4 134878309 134878391 -20751729 + CT-rich Low_complexity Low_complexity 1 82 0 9 1614 326 295 137 0 chr4 134878888 134878983 -20751137 - RSINE1 SINE B4 -55 110 3 9 1614 559 165 183 0 chr4 134879347 134879462 -20750658 + B1_Mus1 SINE Alu 2 137 -11 9 1614 25 0 0 0 chr4 134879513 134879538 -20750582 + AT_rich Low_complexity Low_complexity 1 25 0 9 1614 221 321 54 45 chr4 134879674 134879785 -20750335 - PB1D10 SINE Alu -4 113 2 9 1614 442 271 224 23 chr4 134880230 134880404 -20749716 + B3 SINE B2 1 209 -7 9 1614 302 206 39 182 chr4 134880486 134880526 -20749594 - MT2B LTR ERVL -301 300 200 9 1614 504 183 58 0 chr4 134880526 134880630 -20749490 - PB1D9 SINE Alu -2 118 9 9 1614 189 0 0 0 chr4 134881239 134881260 -20748860 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1614 558 222 109 66 chr4 134881392 134881407 -20748713 - B2_Mm1t SINE B2 0 193 179 9 1614 756 137 26 0 chr4 134881407 134881524 -20748596 - PB1D9 SINE Alu 0 120 1 9 1614 558 222 109 66 chr4 134881524 134881691 -20748429 - B2_Mm1t SINE B2 -15 178 4 9 1614 1293 92 54 0 chr4 134881737 134881921 -20748199 + B2_Mm2 SINE B2 2 195 0 9 1614 356 279 84 28 chr4 134882242 134882349 -20747771 - B1F1 SINE Alu -28 120 8 9 1614 247 316 122 9 chr4 134882252 134882367 -20747753 - B4 SINE B4 -95 197 70 9 1614 271 236 61 55 chr4 134882598 134882696 -20747424 - PB1D7 SINE Alu -1 119 20 9 1614 716 170 74 0 chr4 134882728 134882863 -20747257 - B1_Mur4 SINE Alu -1 149 5 9 1614 234 178 0 0 chr4 134883043 134883088 -20747032 + GA-rich Low_complexity Low_complexity 2 46 0 9 1614 1372 85 16 0 chr4 134883626 134883815 -20746305 + B2_Mm1a SINE B2 2 193 0 9 1614 705 221 14 0 chr4 134884307 134884447 -20745673 + B1_Mur4 SINE Alu 1 142 -8 9 1614 616 286 24 30 chr4 134884484 134884650 -20745470 + RSINE1 SINE B4 1 165 0 9 1614 201 108 0 0 chr4 134885466 134885503 -20744617 + (CTCA)n Simple_repeat Simple_repeat 3 39 0 9 1614 236 268 0 0 chr4 134885522 134885578 -20744542 + ID4 SINE ID 27 82 -1 9 1614 1209 65 11 40 chr4 134885679 134885856 -20744264 - B2_Mm2 SINE B2 -23 172 1 9 1614 831 273 29 10 chr4 134886264 134886471 -20743649 + ID_B1 SINE B4 6 216 -8 9 1614 236 161 156 31 chr4 134886572 134886636 -20743484 + B1F SINE Alu 78 149 0 9 1614 1002 138 7 0 chr4 134886841 134886986 -20743134 - B1_Mur4 SINE Alu -2 148 3 9 1614 227 246 75 30 chr4 134887010 134887077 -20743043 - ID4_ SINE ID -11 72 3 9 1614 660 229 19 38 chr4 134887199 134887358 -20742762 + B3 SINE B2 58 213 -3 9 1614 411 262 39 0 chr4 134887387 134887490 -20742630 - ID_B1 SINE B4 -16 208 102 9 1614 412 212 39 29 chr4 134887499 134887601 -20742519 - PB1D7 SINE Alu -1 119 17 9 1614 212 0 36 0 chr4 134888199 134888227 -20741893 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1614 1141 60 0 0 chr4 134888229 134888363 -20741757 - B1_Mus1 SINE Alu -13 135 2 9 1614 876 70 0 290 chr4 134888483 134888683 -20741437 + B1_Mus1 SINE Alu 1 142 -6 9 1614 391 220 64 0 chr4 134888993 134889102 -20741018 - PB1D7 SINE Alu 0 120 5 9 1614 618 84 374 0 chr4 134889157 134889264 -20740856 - B1_Mus1 SINE Alu 0 148 2 9 1614 1180 75 0 0 chr4 134889285 134889432 -20740688 - B1_Mus1 SINE Alu 0 148 2 9 1614 775 260 29 14 chr4 134889564 134889771 -20740349 + B3 SINE B2 1 210 -6 9 1614 1286 89 0 0 chr4 134889862 134890030 -20740090 + B2_Mm2 SINE B2 2 169 -26 9 1614 266 182 0 0 chr4 134890059 134890103 -20740017 + B2_Mm2 SINE B2 58 101 -94 9 1614 604 221 92 29 chr4 134890448 134890635 -20739485 + B3A SINE B2 1 186 -9 9 1614 1230 54 0 0 chr4 134890646 134890793 -20739327 + B1_Mus2 SINE Alu 1 147 0 9 1614 1254 41 0 0 chr4 134891105 134891251 -20738869 + B1_Mus2 SINE Alu 2 147 0 9 1614 553 185 74 16 chr4 134891269 134891390 -20738730 + B1_Mus1 SINE Alu 1 128 -20 9 1614 474 257 126 42 chr4 134895272 134895463 -20734657 + B3 SINE B2 8 214 -2 9 1614 226 333 13 13 chr4 134895490 134895566 -20734554 + RSINE1 SINE B4 26 101 -64 9 1614 649 153 223 18 chr4 134895754 134895920 -20734200 + B3 SINE B2 7 206 -10 9 1614 270 0 0 0 chr4 134895956 134895986 -20734134 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1614 351 360 20 39 chr4 134896008 134896161 -20733959 - ID_B1 SINE B4 -73 151 2 9 1614 1171 81 97 17 chr4 134897612 134897787 -20732333 + B2_Mm2 SINE B2 1 189 -6 9 1614 237 98 0 0 chr4 134898091 134898132 -20731988 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1614 675 244 0 15 chr4 134903180 134903317 -20726803 - RSINE1 SINE B4 -27 138 4 9 1614 266 210 71 3 chr4 134903353 134903413 -20726707 - PB1D10 SINE Alu -20 100 35 9 1614 398 178 167 9 chr4 134903499 134903607 -20726513 - B1F2 SINE Alu -15 134 10 9 1614 1667 32 0 0 chr4 134903915 134904105 -20726015 + B2_Mm1a SINE B2 1 190 -3 9 1614 1509 53 0 36 chr4 134904139 134904335 -20725785 + B2_Mm1a SINE B2 2 190 -3 9 1614 276 224 35 0 chr4 134904588 134904646 -20725474 + ID4_ SINE ID 1 60 -23 9 1614 1154 29 7 0 chr4 134904647 134904783 -20725337 + B1_Mus2 SINE Alu 1 137 -10 9 1614 297 301 13 174 chr4 134904807 134904956 -20725164 + ID_B1 SINE B4 49 173 -51 9 1614 243 259 47 0 chr4 134905109 134905194 -20724926 + GA-rich Low_complexity Low_complexity 3 91 0 9 1614 249 364 86 50 chr4 134905214 134905288 -20724832 + ID_B1 SINE B4 79 150 -74 9 1614 1211 136 5 0 chr4 134905288 134905479 -20724641 + B2_Mm1t SINE B2 2 193 0 1 1614 249 364 86 50 chr4 134905479 134905543 -20724577 + ID_B1 SINE B4 151 222 -2 9 1614 548 203 138 0 chr4 134905821 134905944 -20724176 + B1F2 SINE Alu 2 141 -8 1 1614 261 200 0 62 chr4 134906095 134906159 -20723961 + L1MA6 LINE L1 6165 6224 -76 1 1614 1125 75 7 13 chr4 134906370 134906519 -20723601 + B1_Mus1 SINE Alu 1 148 0 1 1614 893 94 8 0 chr4 134906544 134906672 -20723448 + B2_Mm1t SINE B2 51 179 -14 1 1614 338 113 0 19 chr4 134906686 134906740 -20723380 + B2_Mm2 SINE B2 49 101 -94 1 1614 24 0 0 0 chr4 134906762 134906786 -20723334 + AT_rich Low_complexity Low_complexity 1 24 0 1 1614 705 82 0 0 chr4 134906834 134906931 -20723189 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1614 652 83 158 90 chr4 134907083 134907216 -20722904 - B1_Mur4 SINE Alu 0 150 9 1 1614 325 297 77 0 chr4 134907264 134907355 -20722765 + PB1D10 SINE Alu 12 109 -8 1 1614 233 364 76 8 chr4 134907355 134907383 -20722737 + ID_B1 SINE B4 93 219 -5 1 1614 694 200 13 46 chr4 134907553 134907705 -20722415 + B1_Mus2 SINE Alu 1 147 0 1 1614 280 203 78 0 chr4 134907847 134907911 -20722209 - ID4 SINE ID -4 79 11 1 1614 29 28 0 0 chr4 134908684 134908720 -20721400 + GC_rich Low_complexity Low_complexity 1 36 0 1 1614 180 0 0 0 chr4 134909319 134909339 -20720781 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1614 244 292 113 0 chr4 134910045 134910151 -20719969 + L2 LINE L2 2498 2615 -804 1 1614 598 102 0 0 chr4 134910305 134910395 -20719725 + B1_Mur4 SINE Alu 60 146 -1 1 1614 188 276 0 33 chr4 134910400 134910460 -20719660 + L2 LINE L2 2805 2862 -557 1 1614 197 33 0 32 chr4 134910698 134910729 -20719391 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1614 272 217 0 42 chr4 134910815 134910887 -20719233 + PB1D10 SINE Alu 5 73 -44 1 1614 1382 68 23 6 chr4 134910896 134911073 -20719047 + B2_Mm2 SINE B2 2 181 -14 1 1614 1221 61 0 0 chr4 134911075 134911222 -20718898 - B1_Mus1 SINE Alu 0 148 2 1 1614 264 59 0 0 chr4 134911226 134911260 -20718860 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1614 247 315 45 36 chr4 134911260 134911273 -20718847 + MT2B2 LTR ERVL 156 264 -316 1 1614 355 295 95 0 chr4 134911273 134911368 -20718752 + PB1D9 SINE Alu 8 111 -9 1 1614 638 195 0 128 chr4 134911368 134911509 -20718611 - B1_Mur4 SINE Alu -27 123 1 1 1614 677 257 21 17 chr4 134911529 134911697 -20718423 - B3 SINE B2 -1 215 50 1 1614 211 128 25 25 chr4 134911697 134911737 -20718383 + CT-rich Low_complexity Low_complexity 1 40 0 1 1614 712 196 22 7 chr4 134911753 134911892 -20718228 - B1_Mur2 SINE Alu -7 142 2 1 1614 270 222 0 0 chr4 134912368 134912422 -20717698 + B1_Mur1 SINE Alu 96 149 0 1 1614 561 220 18 0 chr4 134912662 134912771 -20717349 + PB1D9 SINE Alu 1 111 -9 1 1614 247 81 0 0 chr4 134912978 134913015 -20717105 + ID4_ SINE ID 1 37 -46 1 1614 473 191 130 0 chr4 134913081 134913196 -20716924 - MLT1F1 LTR MaLR -21 548 419 1 1614 421 277 173 12 chr4 134913210 134913378 -20716742 - MLT1F1 LTR MaLR -256 292 98 1 1614 269 275 138 0 chr4 134913395 134913504 -20716616 + PB1 SINE Alu 1 124 -3 1 1614 305 308 44 0 chr4 134913623 134913714 -20716406 + B1_Mur4 SINE Alu 3 97 -53 1 1614 269 253 86 21 chr4 134913739 134913832 -20716288 + B3A SINE B2 4 102 -96 1 1614 1213 87 81 0 chr4 134913901 134914074 -20716046 + B2_Mm2 SINE B2 2 188 -7 1 1614 802 129 126 22 chr4 134914084 134914219 -20715901 + B1_Mur3 SINE Alu 1 149 0 1 1614 1116 54 0 108 chr4 134914247 134914413 -20715707 + B1_Mus1 SINE Alu 1 148 0 1 1614 216 0 0 0 chr4 134914417 134914441 -20715679 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1614 317 279 0 56 chr4 134914443 134914515 -20715605 + ID4_ SINE ID 2 69 -14 1 1614 276 300 11 81 chr4 134914515 134914530 -20715590 + ID SINE ID 2 82 -142 1 1614 406 307 24 67 chr4 134914569 134914733 -20715387 + RSINE1 SINE B4 5 161 -4 1 1614 1108 76 7 0 chr4 134915071 134915216 -20714904 + B1_Mus1 SINE Alu 2 147 -1 1 1614 369 161 195 0 chr4 134915288 134915375 -20714745 + PB1D9 SINE Alu 17 120 0 1 1614 595 117 149 8 chr4 134915428 134915549 -20714571 + B1_Mus2 SINE Alu 10 147 0 1 1614 414 268 0 12 chr4 134915577 134915660 -20714460 + B3 SINE B2 79 160 -56 1 1614 698 154 123 0 chr4 134915667 134915797 -20714323 - B1_Mus2 SINE Alu 0 147 2 1 1614 765 213 0 0 chr4 134915797 134915924 -20714196 - B3 SINE B2 -84 132 6 1 1614 669 295 37 0 chr4 134915947 134916137 -20713983 - B3A SINE B2 -1 197 1 1 1614 251 298 46 37 chr4 134916154 134916262 -20713858 - PB1D9 SINE Alu -10 110 2 1 1614 323 281 10 20 chr4 134916274 134916372 -20713748 - L1MEg LINE L1 -5352 732 636 1 1614 864 237 30 5 chr4 134916410 134916621 -20713499 - B3A SINE B2 -3 213 2 1 1614 1612 52 0 0 chr4 134916709 134916902 -20713218 - B2_Mm1a SINE B2 0 193 1 1 1614 1247 109 5 63 chr4 134917065 134917271 -20712849 + B2_Mm2 SINE B2 2 195 0 1 1614 1017 127 0 26 chr4 134917531 134917685 -20712435 + B1_Mur4 SINE Alu 1 150 0 1 1614 353 368 42 31 chr4 134917709 134917900 -20712220 - ID_B1 SINE B4 -7 217 25 1 1614 1144 251 153 19 chr4 134918100 134918413 -20711707 - ORR1E LTR MaLR -4 355 1 1 1614 587 269 64 6 chr4 134919311 134919483 -20710637 - B3A SINE B2 0 198 17 1 1614 551 229 59 0 chr4 134919554 134919672 -20710448 - RSINE1 SINE B4 -40 125 1 1 1614 909 98 114 0 chr4 134919711 134919843 -20710277 - B1_Mus2 SINE Alu 0 147 1 1 1614 449 34 0 17 chr4 134919951 134920011 -20710109 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1614 408 20 0 0 chr4 134920116 134920165 -20709955 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1614 660 167 18 0 chr4 134920392 134920560 -20709560 + (CA)n Simple_repeat Simple_repeat 1 171 0 1 1614 393 210 204 61 chr4 134920618 134920765 -20709355 + ID_B1 SINE B4 3 170 -54 1 1614 1085 94 0 6 chr4 134920778 134920939 -20709181 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 1 1614 717 260 58 69 chr4 134920944 134921221 -20708899 + B4A SINE B4 5 278 -14 1 1614 253 304 59 43 chr4 134921732 134921986 -20708134 + L1M5 LINE L1 5269 5526 -638 1 1614 972 142 216 0 chr4 134922035 134922211 -20707909 - B3 SINE B2 0 216 3 1 1614 957 206 62 0 chr4 134922212 134922406 -20707714 - ID_B1 SINE B4 -16 208 3 1 1614 295 181 0 0 chr4 134922409 134922462 -20707658 - PB1D7 SINE Alu -78 69 17 1 1614 429 228 65 11 chr4 134922733 134922826 -20707294 - B1F SINE Alu -51 98 1 1 1614 998 120 228 0 chr4 134922895 134923062 -20707058 - B3 SINE B2 -9 207 3 1 1614 338 212 174 12 chr4 134923070 134923156 -20706964 - PB1D9 SINE Alu -19 101 2 1 1614 3626 36 53 36 chr4 134923166 134923633 -20706487 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1614 247 336 71 92 chr4 134924410 134924649 -20705471 + MIRb SINE MIR 15 248 -20 1 1614 207 0 0 0 chr4 134924725 134924748 -20705372 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1614 416 225 11 33 chr4 134924749 134924841 -20705279 - ID_B1 SINE B4 -2 222 133 1 1614 252 267 74 65 chr4 134924841 134924857 -20705263 - B1F2 SINE Alu -1 148 40 1 1614 414 0 0 0 chr4 134924857 134924903 -20705217 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1614 240 35 0 0 chr4 134924903 134924932 -20705188 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1614 799 161 28 55 chr4 134924934 134925079 -20705041 + B1_Mur1 SINE Alu 9 149 0 1 1614 627 78 0 0 chr4 134925160 134925250 -20704870 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 1 1614 753 62 205 0 chr4 134925250 134925362 -20704758 - B1_Mm SINE Alu -12 135 1 1 1614 231 146 0 0 chr4 134925782 134925823 -20704297 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1614 232 357 83 0 chr4 134925842 134925926 -20704194 - B1F1 SINE Alu -57 92 2 1 1614 388 227 80 0 chr4 134926934 134927022 -20703098 + PB1D10 SINE Alu 19 113 -4 1 1614 1437 55 38 0 chr4 134927213 134927396 -20702724 + B2_Mm2 SINE B2 2 191 -4 1 1614 724 212 201 0 chr4 134927422 134927601 -20702519 - ID_B1 SINE B4 -9 215 1 1 1614 238 283 41 116 chr4 134927959 134928131 -20701989 + B4 SINE B4 112 270 -22 1 1614 213 39 0 0 chr4 134928202 134928228 -20701892 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1614 339 272 12 12 chr4 134928633 134928715 -20701405 - ID_B1 SINE B4 -58 166 85 1 1614 331 67 349 28 chr4 134928779 134928885 -20701235 - B2_Mm2 SINE B2 -7 188 49 1 1614 1203 136 11 0 chr4 134928929 134929106 -20701014 - B2_Mm1t SINE B2 -14 179 1 1 1614 930 228 29 14 chr4 134929289 134929498 -20700622 + B3 SINE B2 5 216 0 1 1614 1470 64 16 0 chr4 134929517 134929704 -20700416 + B2_Mm2 SINE B2 2 191 -4 1 1614 593 264 20 34 chr4 134929910 134930059 -20700061 + ID_B1 SINE B4 54 200 -24 1 1614 1215 46 0 13 chr4 134930064 134930217 -20699903 + B2_Mm2 SINE B2 3 153 -42 1 1614 336 24 0 0 chr4 134930217 134930258 -20699862 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 1614 609 193 9 18 chr4 134930299 134930410 -20699710 + B3A SINE B2 1 110 -88 1 1614 246 128 0 0 chr4 134930425 134930464 -20699656 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1614 253 215 63 0 chr4 134930568 134930647 -20699473 - L1MC LINE L1 -2095 5787 5704 1 1614 1069 107 7 0 chr4 134930773 134930923 -20699197 + B2_Mm1a SINE B2 1 151 -42 1 1614 225 83 0 0 chr4 134930926 134930962 -20699158 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1614 1227 62 0 0 chr4 134931039 134931185 -20698935 - B1_Mm SINE Alu 0 147 2 1 1614 852 184 104 16 chr4 134931453 134931646 -20698474 + B3 SINE B2 3 212 -4 1 1614 1100 204 210 17 chr4 134931816 134932106 -20698014 + MTD LTR MaLR 74 419 0 1 1614 495 245 60 41 chr4 134932106 134932251 -20697869 - ID_B1 SINE B4 -16 208 24 1 1614 718 157 83 0 chr4 134932251 134932372 -20697748 + B1_Mus1 SINE Alu 1 131 -17 1 1614 560 214 0 41 chr4 134932433 134932555 -20697565 - PB1D9 SINE Alu -2 118 2 1 1614 308 170 78 138 chr4 134932459 134932575 -20697545 - MT2B LTR ERVL -343 258 150 1 1614 309 281 114 91 chr4 134932733 134932909 -20697211 - MIRb SINE MIR -66 202 23 1 1614 183 156 0 0 chr4 134933620 134933652 -20696468 + CT-rich Low_complexity Low_complexity 1 32 0 1 1614 287 140 398 23 chr4 134933661 134933749 -20696371 - ID_B1 SINE B4 -14 210 90 1 1614 686 282 42 21 chr4 134933801 134933845 -20696275 - B3A SINE B2 0 198 159 1 1614 234 0 0 0 chr4 134933845 134933871 -20696249 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 1 1614 781 231 0 0 chr4 134933871 134934018 -20696102 - B3 SINE B2 -67 149 3 1 1614 313 213 33 0 chr4 134934282 134934343 -20695777 + ID4 SINE ID 5 67 -16 1 1614 389 144 29 29 chr4 134934379 134934515 -20695605 + (TAGA)n Simple_repeat Simple_repeat 1 136 0 1 1614 1372 118 94 0 chr4 134934613 134934816 -20695304 - URR1A DNA MER1_type 0 226 5 1 1614 783 228 172 16 chr4 134935524 134935716 -20694404 - ID_B1 SINE B4 0 224 3 1 1614 560 266 14 0 chr4 134935748 134935887 -20694233 + ID_B1 SINE B4 84 224 0 1 1614 505 328 0 0 chr4 134936249 134936429 -20693691 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1614 239 281 0 0 chr4 134936395 134936452 -20693668 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1614 312 120 20 0 chr4 134936525 134936575 -20693545 + HAL1-3A_ME LINE L1 1975 2025 -833 1 1614 513 212 150 135 chr4 134937707 134937754 -20692366 + ID SINE ID 15 53 -171 1 1614 1207 50 0 0 chr4 134937754 134937894 -20692226 + B1_Mus2 SINE Alu 2 141 -6 1 1614 207 0 0 0 chr4 134937896 134937919 -20692201 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1614 513 212 150 135 chr4 134937919 134938075 -20692045 + ID_B1 SINE B4 54 224 0 1 1614 386 342 79 0 chr4 134938094 134938208 -20691912 + RSINE1 SINE B4 31 153 -12 1 1614 341 302 57 32 chr4 134938623 134938746 -20691374 - B1_Mur2 SINE Alu 0 149 24 1 1614 320 175 182 20 chr4 134938898 134938997 -20691123 + PB1D10 SINE Alu 1 115 -2 1 1614 211 281 0 30 chr4 134939765 134939831 -20690289 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1614 1155 217 56 26 chr4 134939868 134940138 -20689982 - B4 SINE B4 -11 281 4 1 1614 980 185 71 10 chr4 134940169 134940366 -20689754 - B3 SINE B2 -5 211 3 1 1614 1321 99 5 25 chr4 134940396 134940593 -20689527 + B2_Mm1t SINE B2 1 193 0 1 1614 1224 80 79 17 chr4 134940632 134940810 -20689310 + B2_Mm2 SINE B2 2 190 -5 1 1614 241 261 39 104 chr4 134940871 134940948 -20689172 - PB1D10 SINE Alu -32 85 14 1 1614 1008 169 104 0 chr4 134941066 134941267 -20688853 + URR1A DNA MER1_type 5 226 0 1 1614 226 392 16 27 chr4 134941397 134941556 -20688564 + MIR3 SINE MIR 25 183 -25 1 1614 286 318 32 47 chr4 134942081 134942249 -20687871 + MIR SINE MIR 24 200 -68 1 1614 508 267 84 0 chr4 134942332 134942393 -20687727 + ID SINE ID 13 84 -140 1 1614 249 183 148 68 chr4 134942393 134942479 -20687641 + B1_Mm SINE Alu 3 95 -52 1 1614 596 303 49 144 chr4 134942479 134942868 -20687252 - MTEa LTR MaLR -1 378 27 1 1614 339 319 21 0 chr4 134942955 134943049 -20687071 - PB1D10 SINE Alu 0 117 22 1 1614 857 102 63 35 chr4 134943109 134943251 -20686869 - B1_Mus2 SINE Alu -1 146 1 1 1614 808 202 91 11 chr4 134944430 134944593 -20685527 + MTE2a LTR MaLR 139 327 -52 1 1614 945 173 49 22 chr4 134944593 134944605 -20685515 - B2_Mm1t SINE B2 -5 188 178 1 1614 180 0 0 0 chr4 134944605 134944625 -20685495 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1614 1131 78 43 12 chr4 134944625 134944795 -20685325 - B2_Mm2 SINE B2 -16 177 1 1 1614 256 189 18 36 chr4 134944798 134944853 -20685267 + MTE2a LTR MaLR 326 379 0 1 1614 202 203 169 0 chr4 134944854 134944913 -20685207 + MIRb SINE MIR 169 237 -31 1 1614 235 237 0 92 chr4 134945031 134945096 -20685024 + B4A SINE B4 1 59 -233 1 1614 469 122 54 0 chr4 134945355 134945429 -20684691 + PB1D9 SINE Alu 34 111 -9 1 1614 244 180 20 0 chr4 134945386 134945436 -20684684 + ID_B1 SINE B4 172 222 -2 1 1614 207 0 0 0 chr4 134945439 134945462 -20684658 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1614 1180 69 0 0 chr4 134945483 134945628 -20684492 + B1_Mus1 SINE Alu 3 147 -1 1 1614 217 237 0 0 chr4 134945629 134945688 -20684432 + A-rich Low_complexity Low_complexity 3 61 0 1 1614 466 263 169 0 chr4 134945693 134945811 -20684309 + ID_B1 SINE B4 82 219 -5 1 1614 360 290 194 0 chr4 134946253 134946377 -20683743 + B4 SINE B4 54 201 -91 1 1614 489 244 96 0 chr4 134946380 134946495 -20683625 + ID_B1 SINE B4 93 218 -6 1 1614 226 179 0 0 chr4 134946599 134946638 -20683482 + B4A SINE B4 43 81 -211 1 1614 1139 21 0 40 chr4 134946606 134946757 -20683363 + B2_Mm2 SINE B2 50 194 -1 1 1614 319 208 51 31 chr4 134946967 134947057 -20683063 + B1_Mur1 SINE Alu 61 149 0 1 1614 372 187 25 51 chr4 134947106 134947119 -20683001 + ID SINE ID 67 77 -147 1 1614 294 223 27 146 chr4 134947119 134947229 -20682891 + B1_Mur4 SINE Alu 1 97 -53 1 1614 1074 103 12 35 chr4 134947509 134947680 -20682440 - B2_Mm2 SINE B2 -27 168 2 1 1614 22 0 0 0 chr4 134947684 134947706 -20682414 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 812 184 7 0 chr4 134947725 134947866 -20682254 - B3 SINE B2 -72 144 3 1 1614 1028 161 96 19 chr4 134947961 134948170 -20681950 + URR1A DNA MER1_type 2 226 0 1 1614 676 255 0 0 chr4 134948263 134948404 -20681716 - ID_B1 SINE B4 0 224 84 1 1614 945 196 58 80 chr4 134948535 134948972 -20681148 - ORR1D1 LTR MaLR 0 374 5 1 1614 512 218 22 97 chr4 134948972 134949165 -20680955 + ORR1E LTR MaLR 24 193 -181 1 1614 1301 90 17 22 chr4 134949402 134949583 -20680537 - B2_Mm2 SINE B2 -14 181 2 1 1614 643 197 0 8 chr4 134949832 134949950 -20680170 + RSINE1 SINE B4 4 120 -45 1 1614 1219 48 0 7 chr4 134949950 134950098 -20680022 + B1_Mus1 SINE Alu 2 148 0 1 1614 231 42 40 40 chr4 134950098 134950148 -20679972 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1614 276 292 77 127 chr4 134950230 134950344 -20679776 + MER2 DNA MER2_type 120 217 -128 1 1614 1009 160 0 0 chr4 134950344 134950494 -20679626 + B1_Mur4 SINE Alu 1 150 0 1 1614 276 292 77 127 chr4 134950494 134950599 -20679521 + MER2 DNA MER2_type 218 328 -17 1 1614 313 191 15 31 chr4 134950594 134950659 -20679461 + ID_B1 SINE B4 150 213 -11 1 1614 303 255 96 43 chr4 134951765 134951880 -20678240 - RLTR25A LTR ERVK -460 643 523 1 1614 817 153 16 0 chr4 134951803 134951927 -20678193 - B1_Mur4 SINE Alu -24 126 1 1 1614 428 226 0 124 chr4 134951824 134951945 -20678175 - MT2B LTR ERVL -344 257 152 1 1614 366 23 0 0 chr4 134952336 134952379 -20677741 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1 1614 819 148 21 1 chr4 134952381 134952526 -20677594 - B2_Mm2 SINE B2 -57 159 2 1 1614 423 255 2 5 chr4 134952536 134952634 -20677486 - B1F SINE Alu -7 110 15 1 1614 1234 49 0 0 chr4 134953039 134953182 -20676938 - B1_Mus2 SINE Alu 0 147 5 1 1614 229 293 62 14 chr4 134953217 134953325 -20676795 - L2c LINE L2 -45 3342 3228 1 1614 315 318 12 0 chr4 134954508 134954593 -20675527 + B1F SINE Alu 33 118 -31 1 1614 258 122 0 0 chr4 134954585 134954626 -20675494 + B4 SINE B4 13 53 -239 1 1614 282 258 0 0 chr4 134954689 134954751 -20675369 + B3A SINE B2 53 114 -84 1 1614 1209 79 66 22 chr4 134954797 134954978 -20675142 + B2_Mm1t SINE B2 2 190 -3 1 1614 189 256 79 101 chr4 134955059 134955198 -20674922 - MIR SINE MIR -87 189 52 1 1614 1533 52 0 25 chr4 134955261 134955460 -20674660 - MT2_Mm LTR ERVL 0 493 300 1 1614 1259 28 7 0 chr4 134955866 134956011 -20674109 + B1_Mus2 SINE Alu 2 147 0 1 1614 209 200 0 0 chr4 134956013 134956058 -20674062 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1614 754 180 170 57 chr4 134956223 134956417 -20673703 - B3 SINE B2 0 216 1 1 1614 398 20 20 0 chr4 134957019 134957070 -20673050 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1614 238 240 12 118 chr4 134957176 134957261 -20672859 - ID4 SINE ID -3 80 5 1 1614 422 213 30 23 chr4 134957342 134957454 -20672666 + B1_Mur1 SINE Alu 20 130 -19 1 1614 552 226 49 49 chr4 134957460 134957604 -20672516 + B1F SINE Alu 6 149 0 1 1614 313 288 0 0 chr4 134957806 134957879 -20672241 - ID SINE ID -149 75 3 1 1614 954 191 77 0 chr4 134958214 134958408 -20671712 + B3 SINE B2 3 211 -5 1 1614 269 282 5 15 chr4 134958468 134958681 -20671439 + (TG)n Simple_repeat Simple_repeat 1 210 0 1 1614 339 293 154 21 chr4 134958732 134958875 -20671245 - RSINE1 SINE B4 -1 164 3 1 1614 196 340 0 57 chr4 134959874 134959980 -20670140 + MIRm SINE MIR 41 140 -136 1 1614 671 225 13 19 chr4 134960420 134960574 -20669546 + RSINE1 SINE B4 3 155 -10 1 1614 22 35 0 0 chr4 134960590 134960619 -20669501 + AT_rich Low_complexity Low_complexity 1 29 0 1 1614 911 144 0 28 chr4 134960622 134960765 -20669355 + B1_Mur3 SINE Alu 5 143 -6 1 1614 1225 68 0 0 chr4 134961347 134961494 -20668626 + B1_Mus1 SINE Alu 2 148 0 1 1614 934 211 82 0 chr4 134961514 134961708 -20668412 - B3 SINE B2 -6 210 1 1 1614 186 250 0 0 chr4 134961918 134961974 -20668146 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1614 228 135 0 0 chr4 134962493 134962530 -20667590 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1614 2924 52 3 0 chr4 134962573 134962918 -20667202 - ORR1A1 LTR MaLR 0 346 1 1 1614 604 281 0 0 chr4 134962919 134963097 -20667023 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 1614 277 353 6 0 chr4 134963048 134963221 -20666899 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 1 1614 574 243 17 17 chr4 134963153 134963333 -20666787 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1614 391 219 167 122 chr4 134963559 134963715 -20666405 + RSINE1 SINE B4 3 165 0 1 1614 183 80 0 0 chr4 134963761 134963786 -20666334 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1614 1485 59 5 11 chr4 134963860 134964047 -20666073 + B2_Mm2 SINE B2 2 187 -8 1 1614 297 0 0 0 chr4 134964067 134964100 -20666020 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1614 554 193 53 0 chr4 134964112 134964226 -20665894 - RSINE1 SINE B4 -45 120 1 1 1614 441 0 0 0 chr4 134964432 134964481 -20665639 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1 1614 1197 69 0 53 chr4 134964481 134964650 -20665470 - B2_Mm2 SINE B2 -34 161 2 1 1614 474 208 38 0 chr4 134964681 134964787 -20665333 - PB1D10 SINE Alu -6 111 2 1 1614 331 232 417 55 chr4 134964817 134964985 -20665135 - MTC LTR MaLR -188 233 5 1 1614 411 288 55 71 chr4 134964990 134965117 -20665003 + MTE2a LTR MaLR 77 201 -178 1 1614 201 73 23 68 chr4 134965150 134965194 -20664926 + (CATG)n Simple_repeat Simple_repeat 3 44 0 1 1614 1213 41 7 0 chr4 134965284 134965429 -20664691 - B1_Mus2 SINE Alu 0 147 2 1 1614 663 238 14 15 chr4 134965430 134965599 -20664521 + MTE2a LTR MaLR 199 371 -8 1 1614 1877 149 14 117 chr4 134965898 134966316 -20663804 + ORR1C2 LTR MaLR 1 375 -9 1 1614 30 27 0 0 chr4 134966493 134966530 -20663590 + AT_rich Low_complexity Low_complexity 1 37 0 1 1614 960 55 109 0 chr4 134966530 134966658 -20663462 - B1_Mus1 SINE Alu 0 148 7 1 1614 564 201 61 168 chr4 134966658 134966727 -20663393 - ID_B1 SINE B4 0 224 49 1 1614 198 167 0 0 chr4 134966783 134966819 -20663301 + (CGAT)n Simple_repeat Simple_repeat 2 37 0 1 1614 547 94 0 66 chr4 134966842 134966933 -20663187 - B1_Mus2 SINE Alu 0 147 63 1 1614 1074 71 7 0 chr4 134966914 134967055 -20663065 - B2_Mm2 SINE B2 -52 143 2 1 1614 534 317 28 0 chr4 134967152 134967297 -20662823 - ID_B1 SINE B4 -7 217 69 1 1614 778 232 96 24 chr4 134967297 134967505 -20662615 - ID_B1 SINE B4 0 224 2 1 1614 183 234 68 125 chr4 134967615 134967703 -20662417 + L3 LINE CR1 4391 4473 -16 1 1614 382 138 0 58 chr4 134968098 134968167 -20661953 - B1F1 SINE Alu -1 148 84 1 1614 407 257 37 19 chr4 134969014 134969121 -20660999 - PB1D10 SINE Alu -2 115 7 1 1614 485 222 18 9 chr4 134969398 134969507 -20660613 - PB1D10 SINE Alu -5 112 3 1 1614 233 264 169 52 chr4 134970191 134970327 -20659793 - ID_B1 SINE B4 -58 166 15 1 1614 646 238 32 0 chr4 134970495 134970621 -20659499 + ID_B1 SINE B4 85 214 -10 1 1614 536 244 16 8 chr4 134971035 134971159 -20658961 + B1F SINE Alu 15 139 -10 1 1614 255 79 0 0 chr4 134971159 134971197 -20658923 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1614 232 240 48 48 chr4 134971287 134971392 -20658728 - YREP_Mm Unknown Unknown -1484 328 224 1 1614 567 182 35 26 chr4 134971304 134971417 -20658703 + PB1D7 SINE Alu 7 120 0 1 1614 580 224 8 8 chr4 134972611 134972728 -20657392 - ID_B1 SINE B4 0 224 108 1 1614 216 0 0 0 chr4 134972732 134972756 -20657364 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1614 654 176 40 0 chr4 134972762 134972887 -20657233 - B1_Mur1 SINE Alu -18 131 2 1 1614 1235 94 47 0 chr4 134972914 134973084 -20657036 + B2_Mm1t SINE B2 2 179 -14 1 1614 326 98 390 80 chr4 134973149 134973249 -20656871 + B2_Mm2 SINE B2 47 177 -18 1 1614 180 158 0 0 chr4 134973520 134973558 -20656562 + CT-rich Low_complexity Low_complexity 2 39 0 1 1614 690 141 111 0 chr4 134974504 134974639 -20655481 - B1_Mur4 SINE Alu 0 150 1 1 1614 1514 197 89 73 chr4 134975098 134975292 -20654828 + MTC LTR MaLR 1 210 -211 1 1614 1199 62 7 0 chr4 134975292 134975438 -20654682 + B1_Mus2 SINE Alu 1 147 0 1 1614 1514 197 89 73 chr4 134975438 134975638 -20654482 + MTC LTR MaLR 211 401 -20 1 1614 551 224 55 23 chr4 134975697 134975825 -20654295 - RSINE1 SINE B4 -31 134 3 1 1614 2364 133 95 13 chr4 134976465 134976912 -20653208 + BGLII_B LTR ERVK 1 435 -6 1 1614 280 257 116 62 chr4 134977054 134977166 -20652954 + RLTR31_Mur LTR ERVK 436 553 0 1 1614 393 22 0 0 chr4 134977282 134977328 -20652792 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1614 1445 104 65 39 chr4 134977615 134977845 -20652275 + MTC LTR MaLR 178 413 -8 1 1614 803 238 77 11 chr4 134977932 134978115 -20652005 + B3A SINE B2 1 195 -3 1 1614 203 0 0 36 chr4 134978116 134978144 -20651976 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1614 260 293 122 48 chr4 134978280 134978427 -20651693 - RSINE1 SINE B4 -6 159 2 1 1614 1642 37 5 0 chr4 134978433 134978624 -20651496 - B2_Mm1a SINE B2 -1 192 1 1 1614 302 156 16 0 chr4 134978864 134978928 -20651192 + CT-rich Low_complexity Low_complexity 2 66 0 1 1614 811 157 7 36 chr4 134978928 134979067 -20651053 - B1_Mus1 SINE Alu -12 136 2 1 1614 287 270 0 51 chr4 134979078 134979156 -20650964 - MER2 DNA MER2_type -267 78 5 1 1614 248 254 56 56 chr4 134979985 134979999 -20650121 + B4A SINE B4 76 89 -203 1 1614 454 246 91 0 chr4 134979999 134980109 -20650011 + PB1D7 SINE Alu 1 120 0 1 1614 261 0 0 0 chr4 134980354 134980383 -20649737 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1614 246 283 91 36 chr4 134980417 134980527 -20649593 + B1_Mur2 SINE Alu 28 143 -6 1 1614 1106 62 0 40 chr4 134980740 134980892 -20649228 - B1_Mm SINE Alu 0 147 2 1 1614 440 235 0 98 chr4 134981885 134981906 -20648214 + MT2B LTR ERVL 147 154 -447 1 1614 776 141 0 38 chr4 134981906 134982039 -20648081 + B1_Mus1 SINE Alu 1 128 -20 1 1614 903 61 0 0 chr4 134983846 134983961 -20646159 - B1_Mus2 SINE Alu -32 115 1 1 1614 474 221 13 138 chr4 134983961 134984001 -20646119 - MT2B LTR ERVL -449 152 132 1 1614 349 272 26 97 chr4 134984146 134984260 -20645860 + MT2B2 LTR ERVL 152 257 -327 1 1614 813 199 7 0 chr4 134984161 134984302 -20645818 + B1F SINE Alu 6 147 -2 1 1614 1141 96 0 0 chr4 134984315 134984461 -20645659 - B1_Mus2 SINE Alu 0 147 2 1 1614 318 239 28 0 chr4 134984597 134984668 -20645452 - L1MC4 LINE L1 -270 7772 7700 1 1614 330 243 40 0 chr4 134984708 134984782 -20645338 - ID4 SINE ID -5 78 2 1 1614 371 203 47 135 chr4 134984806 134984876 -20645244 - B1F1 SINE Alu -12 137 70 1 1614 1309 108 22 0 chr4 134984876 134985061 -20645059 - B2_Mm2 SINE B2 -6 189 1 1 1614 371 203 47 135 chr4 134985061 134985138 -20644982 - B1F1 SINE Alu -80 69 3 1 1614 212 350 0 49 chr4 134985316 134985335 -20644785 + MIR SINE MIR 91 109 -153 1 1614 243 0 0 0 chr4 134985345 134985372 -20644748 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1614 408 252 118 33 chr4 134985372 134985513 -20644607 - RSINE1 SINE B4 -9 156 1 1 1614 212 350 0 49 chr4 134985513 134985595 -20644525 + MIR SINE MIR 110 187 -75 1 1614 226 254 14 0 chr4 134986161 134986232 -20643888 + ID4 SINE ID 2 73 -10 1 1614 1144 70 28 0 chr4 134986809 134986952 -20643168 - B1_Mus1 SINE Alu -1 147 1 1 1614 835 244 10 49 chr4 134987045 134987248 -20642872 + B3A SINE B2 1 195 -3 1 1614 697 196 220 0 chr4 134987267 134987435 -20642685 + B3 SINE B2 1 205 -11 1 1614 288 302 0 0 chr4 134987720 134987783 -20642337 - ID4_ SINE ID -11 72 10 1 1614 538 256 146 18 chr4 134988230 134988401 -20641719 - B3A SINE B2 -5 193 1 1 1614 556 306 0 75 chr4 134988435 134988608 -20641512 - RSINE1 SINE B4 0 165 6 1 1614 346 119 85 0 chr4 134990586 134990645 -20639475 + RSINE1 SINE B4 68 131 -34 1 1614 1437 78 5 16 chr4 134991004 134991198 -20638922 + B2_Mm1a SINE B2 2 193 0 1 1614 229 336 112 78 chr4 134991222 134991338 -20638782 + B4A SINE B4 173 292 0 1 1614 296 320 32 39 chr4 134991935 134992149 -20637971 - MLT1K LTR MaLR -112 483 152 1 1614 727 288 32 32 chr4 134992930 134993210 -20636910 + B4A SINE B4 1 280 -12 1 1614 327 25 0 0 chr4 134993262 134993302 -20636818 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1614 762 263 67 0 chr4 134993442 134993651 -20636469 - ID_B1 SINE B4 -1 223 1 1 1614 288 255 95 11 chr4 134993731 134993826 -20636294 + MLT1J LTR MaLR 231 333 -179 1 1614 182 227 0 120 chr4 134993902 134993952 -20636168 + L2a LINE L2 3360 3403 -23 1 1614 249 108 0 0 chr4 134993982 134994019 -20636101 + (CTG)n Simple_repeat Simple_repeat 1 37 0 1 1614 213 39 0 0 chr4 134994021 134994047 -20636073 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1614 414 39 0 0 chr4 134994048 134994100 -20636020 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1614 201 108 0 0 chr4 134994357 134994394 -20635726 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1614 224 335 55 82 chr4 134994394 134994410 -20635710 - B2_Mm2 SINE B2 -20 175 7 1 1614 676 271 26 32 chr4 134994410 134994566 -20635554 - RSINE1 SINE B4 -3 162 8 1 1614 1314 95 11 0 chr4 134994568 134994747 -20635373 - B2_Mm1a SINE B2 -11 182 2 1 1614 27 0 0 0 chr4 134995026 134995053 -20635067 + AT_rich Low_complexity Low_complexity 1 27 0 1 1614 874 163 50 0 chr4 134995563 134995704 -20634416 - B1_Mus1 SINE Alu 0 148 1 1 1614 1896 150 115 0 chr4 134995829 134996168 -20633952 - ORR1C1 LTR MaLR 0 378 1 1 1614 795 243 71 11 chr4 134996168 134996186 -20633934 - B3 SINE B2 -29 187 166 1 1614 531 0 0 0 chr4 134996186 134996245 -20633875 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1614 795 243 71 11 chr4 134996245 134996399 -20633721 - B3 SINE B2 -51 165 5 1 1614 409 217 11 46 chr4 134996409 134996496 -20633624 - PB1D10 SINE Alu -21 96 13 1 1614 354 261 11 33 chr4 134996419 134996510 -20633610 - ID_B1 SINE B4 -56 168 80 1 1614 183 167 0 0 chr4 134996511 134996553 -20633567 + T-rich Low_complexity Low_complexity 1 42 0 1 1614 1018 77 0 71 chr4 134996556 134996710 -20633410 - B1_Mus1 SINE Alu 0 148 6 1 1614 312 27 0 0 chr4 134996767 134996804 -20633316 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1614 551 226 47 0 chr4 134996808 134996914 -20633206 - RSINE1 SINE B4 -51 114 4 1 1614 492 232 26 0 chr4 134996935 134997042 -20633078 - B1F SINE Alu 0 120 6 1 1614 544 309 71 63 chr4 134997086 134997338 -20632782 + B4A SINE B4 4 257 -35 1 1614 586 171 0 28 chr4 134997484 134997592 -20632528 - B1_Mur1 SINE Alu -1 148 44 1 1614 226 195 0 0 chr4 134997762 134997803 -20632317 + ID_B1 SINE B4 119 159 -65 1 1614 633 173 28 35 chr4 134997901 134998045 -20632075 + RMER4B LTR ERVK 17 159 -426 1 1614 316 0 22 22 chr4 134998049 134998094 -20632026 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1614 587 52 13 0 chr4 134998097 134998174 -20631946 - B1_Mus2 SINE Alu -6 141 64 1 1614 1159 75 7 0 chr4 134998365 134998511 -20631609 + B1_Mus2 SINE Alu 1 147 0 1 1614 602 250 34 109 chr4 134998531 134998706 -20631414 + RSINE1 SINE B4 4 165 0 1 1614 355 226 10 10 chr4 134998707 134998810 -20631310 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1 1614 211 229 262 0 chr4 134998902 134998963 -20631157 - ID4_ SINE ID 0 83 7 1 1614 391 218 13 0 chr4 134999002 134999080 -20631040 - ID SINE ID -136 88 10 1 1614 288 0 0 0 chr4 134999118 134999150 -20630970 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1614 1279 201 46 11 chr4 134999161 134999438 -20630682 - RLTR18B LTR ERVK -93 523 300 1 1614 1142 51 215 0 chr4 134999438 134999596 -20630524 + B2_Mm2 SINE B2 3 194 -1 1 1614 1233 223 76 8 chr4 134999596 134999866 -20630254 - RLTR18B LTR ERVK -309 307 4 1 1614 598 265 23 8 chr4 134999867 135000000 -20630120 + MTD LTR MaLR 37 171 -248 1 1614 281 307 23 0 chr4 135000000 135000088 -20630032 + MTD LTR MaLR 172 261 -158 1 1614 351 98 0 0 chr4 135000090 135000151 -20629969 + (T)n Simple_repeat Simple_repeat 1 61 0 2 1614 328 198 164 82 chr4 135000159 135000314 -20629806 + MTD LTR MaLR 210 419 0 3 1614 445 316 48 18 chr4 135000339 135000568 -20629552 - L1MB3 LINE L1 -215 5968 5733 4 1614 261 0 0 0 chr4 135000648 135000677 -20629443 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1614 1184 54 0 0 chr4 135000680 135000827 -20629293 - B1_Mm SINE Alu 0 147 1 6 1614 821 172 171 6 chr4 135000885 135001066 -20629054 + B3 SINE B2 5 215 -1 7 1614 1032 107 0 26 chr4 135001074 135001228 -20628892 - B1_Mur4 SINE Alu 0 150 1 8 1614 351 186 61 24 chr4 135001322 135001413 -20628707 - B1F SINE Alu 0 149 54 9 1614 615 193 59 7 chr4 135001817 135001953 -20628167 - B1F SINE Alu -5 144 2 1 1614 2216 64 25 10 chr4 135002002 135002316 -20627804 - ORR1A2 LTR MaLR -8 319 1 1 1614 288 70 0 0 chr4 135002335 135002378 -20627742 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1614 315 0 0 0 chr4 135002378 135002413 -20627707 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1614 670 224 42 24 chr4 135002427 135002647 -20627473 - MT2A LTR ERVL -47 554 326 1 1614 550 250 119 5 chr4 135002717 135002902 -20627218 - ID_B1 SINE B4 -17 207 2 1 1614 898 215 19 19 chr4 135002928 135003141 -20626979 - B3 SINE B2 -1 215 3 1 1614 1310 75 11 11 chr4 135003374 135003563 -20626557 + B2_Mm1t SINE B2 2 190 -3 1 1614 1184 94 21 37 chr4 135003812 135004000 -20626120 - B2_Mm2 SINE B2 -9 186 2 1 201 270 176 0 0 chr4 135004115 135004166 -20625954 + GA-rich Low_complexity Low_complexity 1 51 0 1 1615 767 241 194 17 chr4 135004180 135004475 -20625645 + ORR1E LTR MaLR 1 355 -4 2 1615 623 245 61 0 chr4 135004508 135004655 -20625465 + RSINE1 SINE B4 2 157 -8 2 1615 252 281 16 0 chr4 135004668 135004732 -20625388 - MER3 DNA MER1_type -69 140 76 2 1615 255 283 25 132 chr4 135005366 135005416 -20624704 + MT2B2 LTR ERVL 123 155 -429 2 1615 449 254 45 0 chr4 135005416 135005526 -20624594 + B1F1 SINE Alu 1 115 -34 2 1615 351 248 73 82 chr4 135006301 135006411 -20623709 - PB1D7 SINE Alu -5 115 7 2 1615 185 108 27 0 chr4 135007593 135007630 -20622490 + (CCCCCA)n Simple_repeat Simple_repeat 3 40 0 2 1615 443 219 114 23 chr4 135008981 135008996 -20621124 - B1_Mur2 SINE Alu -6 143 128 2 1615 342 0 0 0 chr4 135008996 135009034 -20621086 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1615 443 219 114 23 chr4 135009034 135009149 -20620971 - B1_Mur2 SINE Alu -22 127 1 2 1615 232 341 0 12 chr4 135009460 135009543 -20620577 - MIR SINE MIR -180 82 1 2 1615 199 371 59 17 chr4 135009553 135009671 -20620449 - MIRb SINE MIR -70 198 76 3 1615 887 234 19 19 chr4 135009790 135009822 -20620298 + ID SINE ID 3 37 -187 3 1615 210 71 0 0 chr4 135009822 135009850 -20620270 + (CTTG)n Simple_repeat Simple_repeat 4 31 0 3 1615 887 234 19 19 chr4 135009850 135010026 -20620094 + ID_B1 SINE B4 38 211 -13 3 1615 330 67 0 0 chr4 135010026 135010071 -20620049 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 3 1615 297 0 0 0 chr4 135010225 135010258 -20619862 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1615 679 229 6 17 chr4 135010776 135010954 -20619166 + Tigger15a DNA TcMar 4 179 -536 3 1615 180 0 0 0 chr4 135011084 135011104 -20619016 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1615 479 170 0 33 chr4 135011197 135011288 -20618832 - PB1D10 SINE Alu -18 99 12 3 1615 901 73 0 0 chr4 135011521 135011645 -20618475 + B2_Mm2 SINE B2 1 124 -71 3 1615 304 106 0 0 chr4 135011671 135011718 -20618402 + B2_Mm2 SINE B2 47 93 -102 3 1615 2649 15 95 6 chr4 135011718 135012055 -20618065 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1615 259 261 0 0 chr4 135012055 135012072 -20618048 + B2_Mm1t SINE B2 95 111 -82 4 1615 52116 32 14 7 chr4 135012079 135018455 -20611665 + IAPEz-int LTR ERVK 57 6481 0 4 1615 2649 15 95 6 chr4 135018455 135018792 -20611328 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1615 351 0 0 0 chr4 135020125 135020164 -20609956 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 4 1615 1502 32 11 5 chr4 135020164 135020351 -20609769 - B2_Mm2 SINE B2 -5 190 3 4 1615 435 52 0 0 chr4 135020523 135020581 -20609539 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1615 324 0 0 0 chr4 135020581 135020616 -20609504 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1615 1329 163 5 0 chr4 135020955 135021176 -20608944 - URR1A DNA MER1_type -4 222 1 4 1615 651 224 135 0 chr4 135021178 135021334 -20608786 - ID_B1 SINE B4 -42 182 6 4 1615 996 135 0 0 chr4 135021905 135022046 -20608074 + B1_Mus1 SINE Alu 1 141 -7 4 1615 567 0 0 0 chr4 135022047 135022110 -20608010 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1615 584 262 69 5 chr4 135022267 135022470 -20607650 - ID_B1 SINE B4 -6 218 3 5 1615 756 147 51 7 chr4 135024939 135025076 -20605044 - B1_Mus1 SINE Alu -1 147 5 5 1615 324 269 84 127 chr4 135024940 135025084 -20605036 - B4 SINE B4 -69 223 87 5 1615 477 0 0 0 chr4 135025084 135025137 -20604983 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 5 1615 802 137 0 8 chr4 135025147 135025279 -20604841 + B3 SINE B2 1 131 -85 5 1615 390 147 0 0 chr4 135025342 135025410 -20604710 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 5 1615 696 252 120 31 chr4 135025412 135025637 -20604483 - B4A SINE B4 -47 245 1 5 1615 249 83 0 0 chr4 135025960 135025996 -20604124 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1615 334 222 5 0 chr4 135026281 135026356 -20603764 + PB1D10 SINE Alu 14 92 -56 5 1615 414 282 33 22 chr4 135026377 135026561 -20603559 + B3 SINE B2 4 216 0 6 1615 773 214 94 5 chr4 135026564 135026766 -20603354 + ID_B1 SINE B4 4 223 -1 6 1615 494 302 95 0 chr4 135026787 135027019 -20603101 + L1MB8 LINE L1 5919 6172 -6 6 1615 1061 60 0 0 chr4 135027033 135027167 -20602953 + B1_Mus1 SINE Alu 1 134 -14 6 1615 278 26 0 25 chr4 135027170 135027210 -20602910 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1615 311 229 125 0 chr4 135028030 135028126 -20601994 + B1F SINE Alu 41 148 -1 6 1615 1317 100 11 0 chr4 135028184 135028374 -20601746 - B2_Mm1t SINE B2 0 193 2 6 1615 252 0 0 0 chr4 135028456 135028484 -20601636 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1615 235 246 126 42 chr4 135028629 135028748 -20601372 + B1F SINE Alu 1 129 -20 6 1615 402 21 0 0 chr4 135029602 135029649 -20600471 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1615 332 261 33 0 chr4 135029700 135029792 -20600328 + B1F SINE Alu 47 141 -8 5 1615 237 338 25 0 chr4 135029810 135029890 -20600230 + ID4_ SINE ID 2 83 0 7 1615 964 119 113 0 chr4 135030474 135030659 -20599461 + MTC LTR MaLR 1 206 -215 7 1615 782 210 31 0 chr4 135030669 135030831 -20599289 - B3 SINE B2 -49 167 1 7 1615 678 135 0 0 chr4 135030932 135031036 -20599084 - B3 SINE B2 -111 105 2 7 1615 516 236 74 7 chr4 135031208 135031247 -20598873 + ID_B1 SINE B4 54 186 -38 7 1615 822 87 0 0 chr4 135031247 135031362 -20598758 + B1_Mus1 SINE Alu 13 127 -21 7 1615 1146 68 0 0 chr4 135031699 135031847 -20598273 - B1_Mus1 SINE Alu 0 148 1 7 1615 781 164 127 22 chr4 135031989 135032170 -20597950 - URR1A DNA MER1_type -22 204 5 7 1615 238 217 72 0 chr4 135032272 135032341 -20597779 - BC1_Mm scRNA scRNA -72 80 7 7 1615 215 209 0 0 chr4 135033287 135033330 -20596790 + G-rich Low_complexity Low_complexity 5 47 0 7 1615 218 265 29 29 chr4 135033682 135033752 -20596368 - MIR SINE MIR -90 172 103 8 1615 250 196 28 25 chr4 135033901 135033991 -20596129 + MIR SINE MIR 33 119 -157 8 1615 1151 55 0 0 chr4 135034814 135034960 -20595160 + B1_Mus1 SINE Alu 2 147 -1 8 1615 225 0 0 0 chr4 135034984 135035009 -20595111 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1615 448 248 72 7 chr4 135035058 135035196 -20594924 + MER117 DNA MER1_type 30 176 -21 8 1615 474 205 0 0 chr4 135035265 135035348 -20594772 - B1_Mur3 SINE Alu -65 84 2 8 1615 335 240 9 127 chr4 135035348 135035377 -20594743 - B4A SINE B4 -206 86 71 8 1615 254 313 12 0 chr4 135035786 135035869 -20594251 + (TATG)n Simple_repeat Simple_repeat 4 87 0 8 1615 285 243 32 0 chr4 135035870 135035952 -20594168 - B4 SINE B4 -202 90 1 8 1615 262 102 33 17 chr4 135035952 135036012 -20594108 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 8 1615 716 213 93 34 chr4 135036055 135036259 -20593861 + B3 SINE B2 1 216 0 8 1615 252 0 0 0 chr4 135036900 135036928 -20593192 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 9 1615 1111 200 39 56 chr4 135037335 135037695 -20592425 + RLTR15 LTR ERVK 1 354 -5 9 1615 664 246 132 5 chr4 135037708 135037908 -20592212 + B4A SINE B4 2 227 -65 9 1615 416 257 142 19 chr4 135037908 135038063 -20592057 + B3A SINE B2 1 174 -24 9 1615 405 0 0 0 chr4 135038884 135038929 -20591191 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1615 1152 48 0 20 chr4 135038949 135039099 -20591021 - B1_Mm SINE Alu 0 147 1 9 1615 322 220 140 0 chr4 135039163 135039263 -20590857 + PB1D10 SINE Alu 4 117 0 9 1615 478 299 29 0 chr4 135039267 135039404 -20590716 + B3A SINE B2 1 141 -57 9 1615 401 298 51 47 chr4 135039543 135039758 -20590362 - B3 SINE B2 0 216 1 9 1615 336 194 8 156 chr4 135040141 135040263 -20589857 + PB1D10 SINE Alu 1 104 -13 9 1615 1377 73 10 5 chr4 135040268 135040462 -20589658 - B2_Mm2 SINE B2 0 195 1 1 1615 237 143 143 0 chr4 135040499 135040548 -20589572 + B3A SINE B2 1 56 -142 1 1615 420 20 0 0 chr4 135040595 135040644 -20589476 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1615 231 146 0 0 chr4 135040644 135040685 -20589435 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1615 29 0 0 0 chr4 135041528 135041557 -20588563 + AT_rich Low_complexity Low_complexity 1 29 0 1 1615 1124 68 0 13 chr4 135041570 135041719 -20588401 + B1_Mus1 SINE Alu 2 148 0 1 1615 474 213 11 0 chr4 135041729 135041823 -20588297 - ID_B1 SINE B4 -13 211 117 1 1615 328 258 87 2 chr4 135041823 135041855 -20588265 - B1F1 SINE Alu -13 136 4 1 1615 263 264 63 42 chr4 135042221 135042316 -20587804 - MIR3 SINE MIR -25 183 87 1 1615 241 326 161 31 chr4 135042615 135042843 -20587277 + MIR SINE MIR 3 267 -1 1 1615 192 370 27 0 chr4 135043074 135043147 -20586973 - MIRb SINE MIR -192 76 2 1 1615 265 133 50 0 chr4 135043155 135043215 -20586905 + CT-rich Low_complexity Low_complexity 4 66 0 1 1615 1027 58 34 17 chr4 135043219 135043395 -20586725 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 1 1615 195 42 0 0 chr4 135043405 135043429 -20586691 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1615 976 62 0 0 chr4 135043429 135043559 -20586561 - B1_Mus1 SINE Alu 0 148 19 1 1615 466 137 9 112 chr4 135043464 135043571 -20586549 - MT2B LTR ERVL -337 264 169 1 1615 306 152 0 0 chr4 135043573 135043632 -20586488 + CT-rich Low_complexity Low_complexity 3 61 0 1 1615 531 191 0 15 chr4 135043634 135043749 -20586371 - B1_Mur2 SINE Alu -1 119 12 1 1615 210 71 0 0 chr4 135043945 135043973 -20586147 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 1 1615 199 321 159 6 chr4 135044032 135044189 -20585931 - MIR3 SINE MIR -25 183 3 1 1615 230 143 71 0 chr4 135044583 135044625 -20585495 + MIR SINE MIR 102 146 -116 1 1615 266 273 98 29 chr4 135044676 135044778 -20585342 - MIR SINE MIR -41 221 113 1 1615 278 391 8 8 chr4 135044901 135045030 -20585090 + MIR3 SINE MIR 56 184 -24 1 1615 539 229 226 11 chr4 135045072 135045249 -20584871 - B3 SINE B2 -1 215 1 1 1615 816 288 56 86 chr4 135045249 135045553 -20584567 + MTE2a LTR MaLR 1 295 -84 1 1615 716 158 211 0 chr4 135046068 135046239 -20583881 + B3 SINE B2 5 211 -5 1 1615 186 43 0 0 chr4 135046352 135046375 -20583745 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1615 701 294 12 73 chr4 135046414 135046660 -20583460 - B4A SINE B4 -60 232 2 1 1615 214 289 0 0 chr4 135047380 135047432 -20582688 + C-rich Low_complexity Low_complexity 1 52 0 1 1615 321 258 99 40 chr4 135047544 135047645 -20582475 + PB1D10 SINE Alu 10 116 -1 1 1615 350 17 68 0 chr4 135047985 135048044 -20582076 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1615 322 304 96 7 chr4 135048167 135048313 -20581807 - RSINE1 SINE B4 -5 160 2 1 1615 186 266 62 25 chr4 135048332 135048413 -20581707 + MIRc SINE MIR 63 146 -122 1 1615 526 277 0 23 chr4 135048462 135048595 -20581525 - RSINE1 SINE B4 -33 132 3 1 1615 243 0 0 0 chr4 135049417 135049444 -20580676 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1615 216 0 0 0 chr4 135050195 135050219 -20579901 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1615 239 53 0 81 chr4 135051574 135051636 -20578484 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 1 1615 406 167 428 13 chr4 135052738 135052890 -20577230 - B3 SINE B2 -1 215 1 1 1615 580 230 58 0 chr4 135052894 135053030 -20577090 - B1_Mur1 SINE Alu 0 149 6 1 1615 769 279 0 27 chr4 135053057 135053278 -20576842 - B3 SINE B2 0 216 2 1 1615 487 232 120 72 chr4 135053284 135053493 -20576627 - ID_B1 SINE B4 -2 222 4 1 1615 218 213 0 0 chr4 135053897 135053944 -20576176 + A-rich Low_complexity Low_complexity 1 47 0 1 1615 460 287 77 24 chr4 135054130 135054337 -20575783 + ORR1E LTR MaLR 21 238 -121 1 1615 765 234 46 46 chr4 135054702 135054921 -20575199 + ID_B1 SINE B4 3 221 -3 1 1615 603 229 51 40 chr4 135056150 135056327 -20573793 + B4A SINE B4 113 291 -1 1 1615 394 350 102 73 chr4 135056386 135056409 -20573711 + L1MEc LINE L1 1100 1119 -5296 1 1615 1988 211 279 25 chr4 135056409 135056997 -20573123 - RMER19A LTR ERVK 0 737 1 1 1615 415 327 117 54 chr4 135056997 135057298 -20572822 + L1MEc LINE L1 1116 1443 -4972 1 1615 1162 56 21 0 chr4 135057298 135057442 -20572678 + B1_Mus2 SINE Alu 1 147 0 1 1615 594 75 0 0 chr4 135057443 135057523 -20572597 + (GGA)n Simple_repeat Simple_repeat 3 82 0 1 1615 415 325 117 53 chr4 135057523 135057605 -20572515 + L1MEc LINE L1 1389 1521 -4894 1 1615 306 257 168 14 chr4 135057683 135057826 -20572294 - MTD LTR MaLR -16 403 206 1 1615 591 161 101 8 chr4 135057795 135057914 -20572206 + B1_Mur2 SINE Alu 20 149 0 1 1615 276 237 172 0 chr4 135057943 135058036 -20572084 + PB1D10 SINE Alu 9 117 0 1 1615 445 159 0 64 chr4 135058093 135058187 -20571933 + B1_Mur1 SINE Alu 59 146 -3 1 1615 221 370 0 0 chr4 135058276 135058357 -20571763 + ID4_ SINE ID 1 81 -2 1 1615 226 98 39 0 chr4 135058420 135058471 -20571649 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1615 1407 84 10 10 chr4 135058478 135058671 -20571449 + B2_Mm1t SINE B2 1 193 0 1 1615 370 340 11 100 chr4 135058675 135058956 -20571164 + L1MEc LINE L1 2407 2662 -3657 1 1615 261 343 88 31 chr4 135059112 135059427 -20570693 + L1MEc LINE L1 2968 3308 -3011 1 1615 608 245 68 7 chr4 135059900 135060048 -20570072 + RSINE1 SINE B4 1 157 -8 1 1615 21 0 0 0 chr4 135060216 135060237 -20569883 + AT_rich Low_complexity Low_complexity 1 21 0 1 1615 1681 26 0 20 chr4 135060401 135060597 -20569523 + B2_Mm1a SINE B2 2 193 0 1 1615 247 229 43 108 chr4 135060609 135060702 -20569418 + MT2B2 LTR ERVL 154 240 -344 1 1615 354 256 35 0 chr4 135060620 135060706 -20569414 + ID_B1 SINE B4 79 167 -57 1 1615 451 235 0 58 chr4 135060631 135060735 -20569385 + PB1D10 SINE Alu 12 109 -8 1 1615 327 365 84 10 chr4 135060742 135061052 -20569068 + L1MD LINE L1 3991 4323 -1823 1 1615 211 319 0 0 chr4 135061078 135061150 -20568970 + ID4 SINE ID 3 74 -9 1 1615 321 268 70 129 chr4 135061238 135061409 -20568711 + RSINE1 SINE B4 3 163 -2 1 1615 783 238 5 32 chr4 135061618 135061805 -20568315 - B3A SINE B2 -16 182 1 1 1615 507 88 0 0 chr4 135062726 135062859 -20567261 - L1Md_F2 LINE L1 0 6582 6503 1 1615 211 214 11 33 chr4 135062859 135062897 -20567223 + T-rich Low_complexity Low_complexity 1 38 0 1 1615 1030 88 0 58 chr4 135062898 135063054 -20567066 - B1_Mus1 SINE Alu 0 148 2 1 1615 552 133 0 32 chr4 135063063 135063156 -20566964 - B3 SINE B2 -126 90 1 1 1615 586 296 7 7 chr4 135063190 135063343 -20566777 - RSINE1 SINE B4 -12 153 1 1 1615 373 238 0 35 chr4 135063640 135063727 -20566393 - ID_B1 SINE B4 -28 196 113 1 1615 215 364 0 52 chr4 135063727 135063750 -20566370 - B1_Mur1 SINE Alu -25 105 15 1 1615 232 308 66 0 chr4 135064115 135064206 -20565914 - PB1D10 SINE Alu -16 101 5 1 1615 21 0 0 0 chr4 135064547 135064568 -20565552 + AT_rich Low_complexity Low_complexity 1 21 0 1 1615 270 0 0 0 chr4 135065014 135065044 -20565076 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1615 314 117 33 0 chr4 135065098 135065158 -20564962 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1 1615 302 310 92 8 chr4 135065327 135065457 -20564663 - MIRb SINE MIR -44 224 84 1 1615 191 222 0 43 chr4 135065462 135065509 -20564611 + L2a LINE L2 3379 3423 -3 1 1615 419 0 20 0 chr4 135066419 135066470 -20563650 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1615 873 132 0 0 chr4 135066558 135066694 -20563426 - B1_Mur3 SINE Alu -5 144 9 1 1615 536 299 40 70 chr4 135067114 135067341 -20562779 + ID_B1 SINE B4 2 221 -3 1 1615 585 218 64 6 chr4 135068237 135068394 -20561726 + MER53 DNA hAT 1 166 -27 1 1615 923 30 30 0 chr4 135068434 135068569 -20561551 + (GA)n Simple_repeat Simple_repeat 1 139 0 1 1615 1069 200 20 15 chr4 135068610 135068808 -20561312 + B3 SINE B2 1 199 -17 1 1615 233 217 14 42 chr4 135068850 135068922 -20561198 - MIR3 SINE MIR -33 175 106 1 1615 321 83 0 20 chr4 135069258 135069307 -20560813 - HAL1-3A_ME LINE L1 -835 2023 1976 1 1615 298 203 15 22 chr4 135069315 135069451 -20560669 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 1615 453 214 13 7 chr4 135069470 135069625 -20560495 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 1615 227 305 61 0 chr4 135069968 135070050 -20560070 + MIRb SINE MIR 134 220 -48 1 1615 224 274 31 31 chr4 135070561 135070659 -20559461 + MIRb SINE MIR 21 118 -150 1 1615 511 184 17 0 chr4 135071431 135071605 -20558515 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 1 1615 191 165 0 58 chr4 135071622 135071725 -20558395 + (CAGA)n Simple_repeat Simple_repeat 4 100 0 1 1615 414 0 0 0 chr4 135071748 135071794 -20558326 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1615 314 233 198 0 chr4 135073011 135073097 -20557023 - B3 SINE B2 -66 150 48 1 1615 516 254 9 9 chr4 135074431 135074546 -20555574 - PB1D10 SINE Alu -1 116 2 1 1615 448 246 6 139 chr4 135074902 135075067 -20555053 + B1F SINE Alu 1 143 -6 1 1615 1381 47 29 0 chr4 135075444 135075616 -20554504 - B2_Mm1a SINE B2 -15 178 2 1 1615 635 219 0 16 chr4 135075943 135076068 -20554052 - B1_Mur2 SINE Alu -8 141 19 1 1615 342 0 0 0 chr4 135076076 135076114 -20554006 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1615 265 338 103 22 chr4 135076210 135076429 -20553691 + MIR3 SINE MIR 2 233 -29 1 1615 541 323 72 42 chr4 135076815 135077077 -20553043 - MER33 DNA MER1_type -10 314 45 1 1615 695 150 15 12 chr4 135077383 135077735 -20552385 + GA-rich Low_complexity Low_complexity 1 353 0 2 1615 256 372 78 4 chr4 135077866 135078109 -20552011 - L2 LINE L2 -356 3063 2803 2 1615 290 318 89 19 chr4 135078469 135078626 -20551494 - B4A SINE B4 -2 290 123 2 1615 1046 29 7 14 chr4 135078685 135078825 -20551295 - B1_Mus1 SINE Alu 0 148 10 2 1615 366 23 0 0 chr4 135078825 135078868 -20551252 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1615 951 145 12 25 chr4 135078869 135079032 -20551088 - B2_Mm2 SINE B2 -33 162 2 2 1615 347 320 0 10 chr4 135079032 135079128 -20550992 - B4A SINE B4 -197 95 1 2 1615 730 242 25 45 chr4 135079270 135079286 -20550834 - B3A SINE B2 -3 195 182 2 1615 197 65 0 31 chr4 135079286 135079318 -20550802 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1615 730 242 25 45 chr4 135079318 135079500 -20550620 - B3A SINE B2 -17 181 1 2 1615 297 0 0 0 chr4 135079612 135079645 -20550475 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1615 258 32 0 0 chr4 135080221 135080252 -20549868 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1615 315 0 0 0 chr4 135080725 135080760 -20549360 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1615 229 293 38 62 chr4 135080940 135081075 -20549045 - MIR SINE MIR -98 170 36 2 1615 215 291 100 25 chr4 135081842 135081962 -20548158 - MIRb SINE MIR -111 157 29 2 1615 272 284 12 0 chr4 135082704 135082785 -20547335 + PB1D7 SINE Alu 37 118 -2 2 1615 270 250 0 0 chr4 135083046 135083098 -20547022 + PB1D7 SINE Alu 20 71 -49 2 1615 442 181 260 65 chr4 135083120 135083274 -20546846 + B4A SINE B4 24 208 -84 2 1615 228 135 0 0 chr4 135083278 135083315 -20546805 + (ATG)n Simple_repeat Simple_repeat 1 37 0 2 1615 1510 38 11 16 chr4 135083472 135083660 -20546460 + B2_Mm1a SINE B2 1 187 -6 2 1615 1138 161 166 0 chr4 135084088 135084281 -20545839 - URR1B DNA MER1_type 0 225 1 2 1615 515 323 42 0 chr4 135084342 135084531 -20545589 + B3A SINE B2 1 197 -1 2 1615 468 327 41 24 chr4 135084540 135084709 -20545411 + B4 SINE B4 1 172 -120 2 1615 417 236 0 0 chr4 135084833 135084981 -20545139 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 1615 618 216 0 0 chr4 135086145 135086256 -20543864 + PB1D10 SINE Alu 1 111 -6 2 1615 1144 205 24 0 chr4 135086296 135086506 -20543614 - B3 SINE B2 -1 215 1 2 1615 245 276 138 15 chr4 135087198 135087315 -20542805 - L1MA4 LINE L1 0 6300 6175 2 1615 783 150 0 0 chr4 135087606 135087733 -20542387 + B1_Mus2 SINE Alu 14 140 -7 2 1615 279 229 121 0 chr4 135089308 135089391 -20540729 - MIRb SINE MIR -58 210 118 2 1615 241 136 50 17 chr4 135090012 135090072 -20540048 + C-rich Low_complexity Low_complexity 3 64 0 2 1615 369 0 0 0 chr4 135090075 135090116 -20540004 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1615 257 208 0 0 chr4 135090183 135090231 -20539889 - RSINE1 SINE B4 -85 80 33 2 1615 612 290 70 13 chr4 135090242 135090469 -20539651 - B4A SINE B4 -51 241 2 2 1615 1373 87 16 0 chr4 135090501 135090686 -20539434 - B2_Mm2 SINE B2 -7 188 1 2 1615 2412 128 10 3 chr4 135090883 135091266 -20538854 - ORR1B1 LTR MaLR -8 386 1 2 1615 382 237 32 0 chr4 135092131 135092224 -20537896 + B4A SINE B4 15 110 -182 2 1615 295 208 0 83 chr4 135092241 135092325 -20537795 + B4A SINE B4 192 268 -24 2 1615 351 312 119 29 chr4 135094549 135094793 -20535327 - MTEa LTR MaLR -4 375 110 2 1615 333 47 0 0 chr4 135094839 135094882 -20535238 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1615 469 190 10 29 chr4 135094886 135094989 -20535131 - PB1D10 SINE Alu 0 117 17 2 1615 369 246 98 8 chr4 135095073 135095196 -20534924 - MER5A1 DNA MER1_type -1 165 32 2 1615 1567 188 58 50 chr4 135095331 135095695 -20534425 + MTC LTR MaLR 1 367 -54 2 1615 265 268 72 12 chr4 135096370 135096453 -20533667 - MER96B DNA hAT -210 207 120 2 1615 214 246 0 80 chr4 135096494 135096569 -20533551 + B1F SINE Alu 81 149 0 2 1615 1164 64 0 0 chr4 135096751 135096891 -20533229 + B1_Mus2 SINE Alu 1 140 -7 2 1615 210 37 0 0 chr4 135096895 135096922 -20533198 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1615 186 189 0 0 chr4 135097226 135097263 -20532857 + GA-rich Low_complexity Low_complexity 3 39 0 2 1615 239 325 62 31 chr4 135097271 135097401 -20532719 - MER63B DNA AcHobo -30 406 273 2 1615 203 125 25 0 chr4 135097946 135097986 -20532134 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1615 704 210 6 0 chr4 135099371 135099538 -20530582 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 2 1615 185 437 23 0 chr4 135099728 135099815 -20530305 - MIRb SINE MIR -129 139 51 2 1615 228 305 98 0 chr4 135101734 135101816 -20528304 + MIRb SINE MIR 110 199 -69 2 1615 184 364 8 106 chr4 135102641 135102764 -20527356 + MIR SINE MIR 141 251 -11 2 1615 192 77 0 0 chr4 135103038 135103064 -20527056 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1615 777 206 0 0 chr4 135103064 135103200 -20526920 - B1_Mur2 SINE Alu -11 138 3 2 1615 206 150 25 0 chr4 135104444 135104484 -20525636 + G-rich Low_complexity Low_complexity 2 42 0 2 1615 189 316 42 2 chr4 135105334 135105443 -20524677 + MIR SINE MIR 6 118 -150 2 1615 360 0 0 0 chr4 135108410 135108450 -20521670 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1615 321 330 58 10 chr4 135110797 135110944 -20519176 - MIRb SINE MIR -55 153 6 2 1615 1195 42 28 0 chr4 135111173 135111317 -20518803 - B1_Mus1 SINE Alu 0 148 1 2 1615 753 218 53 0 chr4 135111328 135111498 -20518622 - ID_B1 SINE B4 -3 221 43 2 1615 460 213 0 141 chr4 135112429 135112571 -20517549 - B1F SINE Alu -10 139 18 2 1615 215 175 25 0 chr4 135112919 135112959 -20517161 - MER91C DNA Tip100 -99 41 1 2 1615 390 100 0 0 chr4 135114395 135114455 -20515665 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1615 1151 218 0 35 chr4 135114528 135114756 -20515364 - ID_B1 SINE B4 -1 223 4 2 1615 303 330 52 0 chr4 135114847 135114944 -20515176 - ORSL DNA Tip100 -170 105 4 2 1615 296 316 42 24 chr4 135115274 135115422 -20514698 + MIRb SINE MIR 18 169 -99 2 1615 324 0 0 0 chr4 135115446 135115482 -20514638 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 2 1615 253 279 12 0 chr4 135115657 135115745 -20514375 + MIRc SINE MIR 25 119 -149 2 1615 765 304 77 22 chr4 135117295 135117567 -20512553 + B4 SINE B4 6 292 0 2 1615 297 109 0 0 chr4 135117587 135117633 -20512487 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1615 509 184 51 34 chr4 135118241 135118359 -20511761 + PB1D7 SINE Alu 1 120 0 2 1615 955 174 141 20 chr4 135118586 135118785 -20511335 - ID_B1 SINE B4 0 224 2 2 1615 184 300 47 57 chr4 135118786 135118892 -20511228 - MER5A DNA MER1_type -78 111 7 2 1615 954 241 80 0 chr4 135119227 135119426 -20510694 - ID_B1 SINE B4 -8 216 2 2 1615 210 318 30 0 chr4 135119428 135119494 -20510626 - MIRb SINE MIR -195 73 6 2 1615 298 405 45 18 chr4 135120547 135120768 -20509352 - MIRb SINE MIR -20 248 22 2 1615 357 335 61 46 chr4 135121486 135121683 -20508437 - L2a LINE L2 -15 3411 3212 2 1615 249 108 0 0 chr4 135121818 135121855 -20508265 + (CACCAT)n Simple_repeat Simple_repeat 1 37 0 2 1615 332 320 33 80 chr4 135122587 135122862 -20507258 - MIRc SINE MIR -5 263 2 2 1615 234 267 0 26 chr4 135123969 135124046 -20506074 + MIRc SINE MIR 54 128 -140 2 1615 237 312 146 15 chr4 135124840 135124970 -20505150 - RSINE1 SINE B4 -2 163 17 2 1615 500 185 120 23 chr4 135125304 135125437 -20504683 - MER5A DNA MER1_type 0 189 44 2 1615 280 225 56 0 chr4 135125472 135125543 -20504577 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 2 1615 344 219 0 58 chr4 135125660 135125683 -20504437 + B4A SINE B4 70 85 -207 2 1615 491 226 20 0 chr4 135125683 135125794 -20504326 + PB1D10 SINE Alu 1 123 -26 2 1615 279 0 0 0 chr4 135125808 135125839 -20504281 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 1615 231 36 0 0 chr4 135127219 135127247 -20502873 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2 1615 253 310 11 0 chr4 135127318 135127405 -20502715 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1615 342 0 0 0 chr4 135127411 135127449 -20502671 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1615 381 22 0 0 chr4 135127449 135127494 -20502626 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1615 378 0 0 0 chr4 135127797 135127839 -20502281 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1615 308 339 74 41 chr4 135128608 135128851 -20501269 - MIRb SINE MIR -4 264 14 2 1615 229 312 42 31 chr4 135130172 135130268 -20499852 - L2b LINE L2 -17 3358 3262 2 1615 267 79 0 0 chr4 135130280 135130318 -20499802 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1615 360 0 0 0 chr4 135130318 135130357 -20499763 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1615 238 216 68 0 chr4 135130709 135130783 -20499337 + C-rich Low_complexity Low_complexity 1 79 0 2 1615 342 284 75 34 chr4 135131084 135131230 -20498890 + L2b LINE L2 3208 3359 -16 2 1615 298 259 145 8 chr4 135132099 135132216 -20497904 + MIRc SINE MIR 48 180 -88 2 1615 1012 237 23 73 chr4 135132771 135133072 -20497048 + B4 SINE B4 3 288 -4 2 1615 212 330 71 0 chr4 135133613 135133725 -20496395 - MIRb SINE MIR -114 154 35 2 1616 333 47 0 0 chr4 135136049 135136092 -20494028 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1616 483 288 56 6 chr4 135136092 135136262 -20493858 + MIRb SINE MIR 33 219 -49 2 1616 1113 91 6 17 chr4 135136837 135137016 -20493104 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 3 1616 297 173 253 0 chr4 135137016 135137091 -20493029 - B1_Mus2 SINE Alu -26 94 1 3 1616 396 0 0 0 chr4 135139051 135139095 -20491025 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 3 1616 332 215 139 0 chr4 135139586 135139665 -20490455 + PB1D10 SINE Alu 11 100 -17 3 1616 374 261 34 0 chr4 135139665 135139753 -20490367 + U6 snRNA snRNA 4 94 -13 3 1616 866 175 7 0 chr4 135139765 135139908 -20490212 + B1_Mus1 SINE Alu 3 146 -2 3 1616 344 322 59 18 chr4 135139918 135140139 -20489981 + L1ME2 LINE L1 5935 6164 0 3 1616 434 314 95 54 chr4 135142094 135142184 -20487936 + L1MB5 LINE L1 5768 5847 -327 3 1616 1062 233 0 22 chr4 135142184 135142412 -20487708 + ID_B1 SINE B4 2 224 0 3 1616 434 314 95 54 chr4 135142412 135142479 -20487641 + L1MB5 LINE L1 5848 5923 -251 3 1616 1205 68 0 0 chr4 135142479 135142625 -20487495 - B1_Mus2 SINE Alu -1 146 1 3 1616 315 0 0 0 chr4 135142630 135142665 -20487455 + (ATG)n Simple_repeat Simple_repeat 2 36 0 3 1616 434 314 95 54 chr4 135142665 135142891 -20487229 + L1MB5 LINE L1 5929 6173 -1 3 1616 211 196 70 18 chr4 135143460 135143517 -20486603 - MIR SINE MIR -109 99 40 3 1616 180 0 0 0 chr4 135145107 135145127 -20484993 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1616 383 303 0 0 chr4 135145701 135145977 -20484143 + (TG)n Simple_repeat Simple_repeat 1 276 0 3 1616 196 329 25 12 chr4 135147324 135147404 -20482716 - MIRb SINE MIR -91 177 97 3 1616 420 320 40 20 chr4 135148197 135148347 -20481773 + MIRb SINE MIR 33 185 -83 3 1616 195 42 0 0 chr4 135148922 135148946 -20481174 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1616 2547 141 175 16 chr4 135148966 135149470 -20480650 - RMER4B LTR ERVK 0 585 2 3 1616 386 269 0 88 chr4 135150121 135150235 -20479885 + B4 SINE B4 187 290 -2 3 1616 295 85 0 41 chr4 135150397 135150446 -20479674 + B3 SINE B2 3 49 -167 3 1616 230 163 0 0 chr4 135150442 135150491 -20479629 + B3 SINE B2 168 216 0 3 1616 333 197 14 0 chr4 135150692 135150763 -20479357 + ID4 SINE ID 12 83 0 3 1616 414 0 0 0 chr4 135150950 135150996 -20479124 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1616 990 85 0 0 chr4 135150998 135151139 -20478981 - B1_Mm SINE Alu -6 141 1 3 1616 901 257 31 0 chr4 135151139 135151359 -20478761 - B4A SINE B4 -63 229 3 3 1616 960 176 0 0 chr4 135151390 135151538 -20478582 - B1_Mur3 SINE Alu 0 149 2 3 1616 252 0 0 0 chr4 135152193 135152221 -20477899 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1616 238 367 38 45 chr4 135152471 135152628 -20477492 + MIRb SINE MIR 35 190 -78 3 1616 408 266 181 0 chr4 135152635 135152830 -20477290 + B4 SINE B4 3 232 -60 3 1616 699 120 0 0 chr4 135152830 135152938 -20477182 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 3 1616 249 318 0 0 chr4 135152938 135153001 -20477119 + B4A SINE B4 216 278 -14 3 1616 354 80 0 0 chr4 135153008 135153058 -20477062 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1616 355 332 104 9 chr4 135153106 135153337 -20476783 + L2a LINE L2 3148 3400 -26 3 1616 236 304 32 121 chr4 135154161 135154318 -20475802 - L2b LINE L2 -223 3152 3010 3 1616 815 160 23 0 chr4 135154604 135154779 -20475341 + GA-rich Low_complexity Low_complexity 1 179 0 3 1616 1326 78 0 0 chr4 135154788 135154968 -20475152 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1616 204 40 0 0 chr4 135155308 135155333 -20474787 + (G)n Simple_repeat Simple_repeat 1 25 0 3 1616 238 258 32 0 chr4 135155829 135155891 -20474229 - MIRc SINE MIR -149 119 56 3 1616 581 248 50 0 chr4 135156280 135156421 -20473699 + B1F SINE Alu 1 148 -1 3 1616 426 209 171 17 chr4 135156426 135156543 -20473577 + ID_B1 SINE B4 90 224 0 3 1616 237 254 225 17 chr4 135156440 135156560 -20473560 - YREP_Mm Unknown Unknown -1518 294 150 3 1616 590 255 14 0 chr4 135156565 135156706 -20473414 + B1_Mur4 SINE Alu 2 144 -6 3 1616 790 264 23 6 chr4 135156951 135157126 -20472994 + B3A SINE B2 5 182 -16 3 1616 31 0 0 0 chr4 135157141 135157172 -20472948 + AT_rich Low_complexity Low_complexity 1 31 0 3 1616 1375 278 117 60 chr4 135157562 135157936 -20472184 + L1ME2z LINE L1 5405 5775 -669 3 1616 379 236 0 0 chr4 135157936 135158008 -20472112 + ID4 SINE ID 2 73 -10 3 1616 1375 278 117 60 chr4 135158008 135158480 -20471640 + L1ME2z LINE L1 5776 6299 -145 3 1616 636 173 0 32 chr4 135158550 135158735 -20471385 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1616 405 163 5 58 chr4 135158751 135158940 -20471180 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1616 233 177 25 25 chr4 135159030 135159111 -20471009 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1616 309 127 0 35 chr4 135159111 135159168 -20470952 + HAL1-3A_ME LINE L1 1973 2027 -831 3 1616 329 294 22 0 chr4 135159216 135159308 -20470812 + B1F SINE Alu 35 128 -21 3 1616 261 288 95 14 chr4 135159739 135159813 -20470307 + MIRc SINE MIR 24 103 -165 3 1616 243 283 59 29 chr4 135160057 135160159 -20469961 + MIRm SINE MIR 93 197 -79 3 1616 5174 141 44 81 chr4 135160381 135161085 -20469035 - RMER12 LTR ERVK 0 1404 316 3 1616 1141 75 7 0 chr4 135161085 135161231 -20468889 + B1_Mus1 SINE Alu 2 148 0 3 1616 186 43 0 0 chr4 135161233 135161256 -20468864 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1616 5174 88 20 37 chr4 135161256 135161581 -20468539 - RMER12 LTR ERVK -1007 315 1 3 1616 585 258 54 0 chr4 135162341 135162508 -20467612 + MTE2b LTR MaLR 1 176 -203 3 1616 605 257 35 14 chr4 135162514 135162656 -20467464 + RSINE1 SINE B4 3 147 -18 3 1616 237 65 0 0 chr4 135162659 135162690 -20467430 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1616 310 275 36 7 chr4 135162754 135162893 -20467227 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 1616 403 267 41 50 chr4 135162897 135163044 -20467076 + MTE2b LTR MaLR 157 301 -78 3 1616 588 198 78 23 chr4 135163140 135163269 -20466851 - B1F SINE Alu 0 149 14 3 1616 301 208 83 91 chr4 135163167 135163299 -20466821 - MT2B LTR ERVL -331 270 140 3 1616 261 332 47 84 chr4 135163661 135163877 -20466243 + MIRb SINE MIR 28 238 -30 3 1616 421 201 142 37 chr4 135164307 135164441 -20465679 + B1F SINE Alu 1 148 -1 3 1616 515 285 64 8 chr4 135164500 135164774 -20465346 + L1MA6 LINE L1 5990 6282 -9 3 1616 346 71 327 109 chr4 135164783 135164893 -20465227 - B2_Mm2 SINE B2 -14 181 48 3 1616 1263 107 11 11 chr4 135164960 135165139 -20464981 - B2_Mm1t SINE B2 -14 179 1 3 1616 25 31 0 0 chr4 135165139 135165171 -20464949 + AT_rich Low_complexity Low_complexity 1 32 0 3 1616 410 293 75 0 chr4 135165182 135165315 -20464805 + B1F SINE Alu 2 144 -5 3 1616 275 188 188 0 chr4 135165325 135165389 -20464731 + ID4_ SINE ID 1 76 -7 3 1616 27 81 0 0 chr4 135165427 135165489 -20464631 + AT_rich Low_complexity Low_complexity 1 62 0 3 1616 420 20 0 0 chr4 135165540 135165589 -20464531 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1616 445 247 0 0 chr4 135165589 135165678 -20464442 - RSINE1 SINE B4 -74 91 3 3 1616 207 0 0 0 chr4 135165839 135165862 -20464258 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1616 306 0 0 0 chr4 135165985 135166019 -20464101 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1616 728 245 18 0 chr4 135166040 135166203 -20463917 - B3A SINE B2 -31 167 2 3 1616 224 59 0 29 chr4 135166210 135166245 -20463875 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1616 333 0 0 0 chr4 135166250 135166287 -20463833 + (TTG)n Simple_repeat Simple_repeat 2 38 0 3 1616 228 201 0 0 chr4 135166633 135166686 -20463434 - L2a LINE L2 -355 3071 3016 3 1616 1400 261 12 79 chr4 135166695 135167151 -20462969 - RMER19C LTR ERVK 0 611 220 3 1616 279 246 143 8 chr4 135167534 135167653 -20462467 + B1_Mus1 SINE Alu 5 139 -9 3 1616 273 321 0 12 chr4 135167667 135167752 -20462368 + BC1_Mm scRNA scRNA 9 92 -60 3 1616 392 263 190 35 chr4 135167825 135167967 -20462153 + RSINE1 SINE B4 2 165 0 3 1616 585 210 6 18 chr4 135167972 135168137 -20461983 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 3 1616 181 133 0 0 chr4 135168321 135168351 -20461769 - MIRc SINE MIR -120 148 119 3 1616 201 196 0 0 chr4 135169212 135169263 -20460857 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 3 1616 632 144 0 16 chr4 135169299 135169426 -20460694 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 3 1616 203 296 7 0 chr4 135169460 135169595 -20460525 + (CCCA)n Simple_repeat Simple_repeat 3 138 0 3 1616 333 0 0 0 chr4 135169617 135169654 -20460466 + (CAGC)n Simple_repeat Simple_repeat 4 40 0 3 1616 256 338 62 21 chr4 135170256 135170401 -20459719 - MIRb SINE MIR -42 226 76 3 1616 575 228 150 0 chr4 135170555 135170682 -20459438 - B1_Mus1 SINE Alu 0 148 3 3 1616 185 310 0 17 chr4 135170873 135170932 -20459188 - MIR3 SINE MIR -43 165 108 3 1616 803 244 45 5 chr4 135170947 135170962 -20459158 - B3 SINE B2 -6 210 195 3 1616 621 0 0 0 chr4 135170962 135171031 -20459089 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1616 803 244 45 5 chr4 135171031 135171217 -20458903 - B3 SINE B2 -22 194 1 3 1616 1591 106 72 18 chr4 135171242 135171630 -20458490 - ORR1A4 LTR MaLR 0 367 1 3 1616 195 100 0 0 chr4 135171695 135171725 -20458395 + (ATTTG)n Simple_repeat Simple_repeat 2 31 0 3 1616 494 60 0 0 chr4 135171725 135171792 -20458328 - L1Md_F2 LINE L1 -12 6570 6504 3 1616 2024 261 37 6 chr4 135172085 135172601 -20457519 + RMER1B Other Other 1 532 -534 3 1616 4658 161 73 34 chr4 135172592 135173551 -20456569 + RMER1A Other Other 32 1027 -3 3 1616 207 191 0 21 chr4 135173818 135173866 -20456254 + G-rich Low_complexity Low_complexity 1 47 0 3 1616 225 357 9 0 chr4 135173952 135174064 -20456056 - L1M LINE L1 -811 5429 5317 3 1616 480 243 28 0 chr4 135174723 135174830 -20455290 + PB1D9 SINE Alu 5 114 -6 3 1616 243 333 40 52 chr4 135174799 135174973 -20455147 + MLT1A1 LTR MaLR 229 400 -8 3 1616 444 290 79 78 chr4 135174987 135175378 -20454742 + MLT1D LTR MaLR 1 453 -52 4 1616 2645 123 32 93 chr4 135175514 135175989 -20454131 - RLTR41 LTR ERV1 0 446 1 4 1616 33 0 0 0 chr4 135176072 135176105 -20454015 + AT_rich Low_complexity Low_complexity 1 33 0 4 1616 328 127 0 40 chr4 135176117 135176184 -20453936 - B2_Mm2 SINE B2 -107 109 47 4 1616 1130 104 92 0 chr4 135176268 135176432 -20453688 - B2_Mm1t SINE B2 -14 179 1 4 1616 963 228 10 40 chr4 135176474 135176623 -20453497 + B3A SINE B2 3 151 -47 4 1616 324 0 0 0 chr4 135176623 135176659 -20453461 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1616 963 228 10 40 chr4 135176659 135176710 -20453410 + B3A SINE B2 152 197 -1 4 1616 849 152 14 14 chr4 135177453 135177600 -20452520 + B1_Mur2 SINE Alu 3 149 0 4 1616 242 324 111 25 chr4 135179850 135180064 -20450056 - MIRb SINE MIR -34 228 3 4 1616 312 365 52 14 chr4 135180680 135180891 -20449229 + MIRb SINE MIR 5 223 -45 4 1616 407 146 24 0 chr4 135181225 135181307 -20448813 + CT-rich Low_complexity Low_complexity 3 86 0 4 1616 1077 121 0 0 chr4 135181332 135181506 -20448614 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 4 1616 381 185 0 0 chr4 135181538 135181603 -20448517 - B4A SINE B4 -9 283 219 4 1616 410 169 0 13 chr4 135182029 135182107 -20448013 - PB1D10 SINE Alu -1 116 40 4 1616 185 354 46 0 chr4 135183841 135183906 -20446214 + L2c LINE L2 3281 3348 -39 4 1616 210 295 16 0 chr4 135184854 135184915 -20445205 + L2b LINE L2 3297 3358 -17 4 1616 255 313 141 27 chr4 135185102 135185286 -20444834 + MIR SINE MIR 29 233 -29 4 1616 332 325 84 35 chr4 135185830 135186114 -20444006 + L1MD2 LINE L1 6052 6349 -10 4 1616 634 212 75 0 chr4 135186173 135186319 -20443801 + B3A SINE B2 1 157 -41 4 1616 289 402 18 6 chr4 135186611 135186776 -20443344 + MER63A DNA AcHobo 4 170 -40 4 1616 869 230 11 21 chr4 135187180 135187371 -20442749 + B3 SINE B2 23 211 -5 4 1616 183 114 0 0 chr4 135187377 135187412 -20442708 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 1616 975 47 133 0 chr4 135187413 135187541 -20442579 - B1_Mm SINE Alu -2 145 1 4 1616 932 70 132 0 chr4 135187647 135187776 -20442344 + B1_Mm SINE Alu 2 147 0 4 1616 198 0 0 0 chr4 135187776 135187798 -20442322 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1616 406 208 143 65 chr4 135188478 135188632 -20441488 + MLT1J1 LTR MaLR 1 166 -278 4 1616 1466 58 16 26 chr4 135188920 135189113 -20441007 - B2_Mm2 SINE B2 -4 191 1 4 1616 919 148 0 0 chr4 135189176 135189318 -20440802 - B1_Mus1 SINE Alu -5 143 2 4 1616 429 252 9 9 chr4 135189526 135189638 -20440482 - PB1D10 SINE Alu 0 117 6 4 1616 309 306 102 20 chr4 135189672 135189869 -20440251 - L1MB4 LINE L1 -184 5996 5784 4 1616 315 130 0 0 chr4 135189957 135190011 -20440109 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1616 813 296 51 43 chr4 135190013 135190289 -20439831 - B4 SINE B4 -14 278 1 4 1616 522 46 0 0 chr4 135190489 135190554 -20439566 + (TCC)n Simple_repeat Simple_repeat 2 66 0 4 1616 478 287 12 31 chr4 135191218 135191380 -20438740 + MIRc SINE MIR 67 225 -43 4 1616 621 256 207 36 chr4 135191494 135191774 -20438346 + MTEb LTR MaLR 45 372 -7 4 1616 345 392 57 7 chr4 135191828 135192036 -20438084 - ORR1E LTR MaLR -10 349 128 4 1616 342 0 0 0 chr4 135192036 135192074 -20438046 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1616 345 392 57 7 chr4 135192074 135192145 -20437975 - ORR1E LTR MaLR -232 127 57 4 1616 589 183 0 37 chr4 135192418 135192526 -20437594 + ID_B1 SINE B4 119 222 -2 4 1616 225 0 0 0 chr4 135192546 135192571 -20437549 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1616 1171 0 0 14 chr4 135192845 135192986 -20437134 + (TCTCCC)n Simple_repeat Simple_repeat 2 140 0 4 1616 1150 187 30 0 chr4 135193433 135193636 -20436484 + B3 SINE B2 1 209 -7 4 1616 893 126 14 0 chr4 135193646 135193789 -20436331 + B1F2 SINE Alu 3 147 -2 4 1616 275 299 15 117 chr4 135193775 135193805 -20436315 + B4 SINE B4 65 168 -124 4 1616 460 256 43 14 chr4 135193805 135193944 -20436176 + B1F1 SINE Alu 6 148 -1 4 1616 275 299 15 117 chr4 135193944 135193964 -20436156 + B4 SINE B4 169 246 -46 4 1616 263 266 16 0 chr4 135193964 135194028 -20436092 + GA-rich Low_complexity Low_complexity 1 65 0 4 1616 633 155 0 41 chr4 135194721 135194842 -20435278 - B1_Mur1 SINE Alu 0 149 34 4 1616 204 125 0 0 chr4 135194978 135195010 -20435110 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1616 303 145 203 0 chr4 135195072 135195169 -20434951 - B2_Mm2 SINE B2 -10 183 47 4 1616 1345 80 11 6 chr4 135195241 135195418 -20434702 - B2_Mm1t SINE B2 -14 179 2 4 1616 1634 47 0 0 chr4 135195550 135195742 -20434378 + B2_Mm1a SINE B2 1 192 -1 4 1616 892 239 33 14 chr4 135195980 135196192 -20433928 - ID_B1 SINE B4 0 224 9 4 1616 186 194 27 14 chr4 135196541 135196614 -20433506 + CT-rich Low_complexity Low_complexity 1 74 0 4 1616 345 169 0 0 chr4 135196628 135196711 -20433409 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 4 1616 450 198 39 31 chr4 135196853 135196983 -20433137 + MYSERV6-int LTR ERVK 5339 5469 -1081 4 1616 2826 40 42 16 chr4 135197649 135198035 -20432085 + MTB_Mm LTR MaLR 12 407 0 4 1616 1359 244 34 43 chr4 135198065 135198617 -20431503 + MYSERV6-int LTR ERVK 8092 8456 -503 4 1616 465 190 16 72 chr4 135198633 135198758 -20431362 + RMER17C-int LTR ERVK 2713 2830 -408 4 1616 518 0 0 16 chr4 135198758 135198821 -20431299 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1616 284 281 99 33 chr4 135198915 135199066 -20431054 + RMER17C-int LTR ERVK 3015 3175 -63 4 1616 383 216 48 19 chr4 135199227 135199435 -20430685 + RMER17D LTR ERVK 256 469 -420 4 1616 631 246 33 52 chr4 135199364 135199574 -20430546 + RMER10B LTR ERVL 193 398 0 4 1616 371 290 65 0 chr4 135199574 135199681 -20430439 + RSINE1 SINE B4 48 161 -4 4 1616 438 65 0 0 chr4 135199703 135199765 -20430355 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1616 239 203 45 30 chr4 135199817 135199883 -20430237 + ID4 SINE ID 3 69 -14 4 1616 288 0 0 0 chr4 135200046 135200078 -20430042 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1616 627 202 6 17 chr4 135200141 135200317 -20429803 + CT-rich Low_complexity Low_complexity 1 174 0 4 1616 309 317 165 57 chr4 135201558 135201752 -20428368 + Charlie1b DNA MER1_type 7 221 -302 4 1616 1200 247 146 16 chr4 135201786 135202157 -20427963 - MTD LTR MaLR 0 419 1 4 1616 655 266 45 23 chr4 135203034 135203211 -20426909 + B3A SINE B2 1 181 -17 4 1616 221 280 118 16 chr4 135203247 135203374 -20426746 + L2c LINE L2 2983 3122 -265 4 1616 351 311 19 9 chr4 135203401 135203508 -20426612 - PB1D10 SINE Alu -6 111 4 4 1616 188 313 43 29 chr4 135203627 135203696 -20426424 + MER5A DNA MER1_type 82 151 -38 4 1616 1126 62 21 0 chr4 135204639 135204784 -20425336 - B1_Mur4 SINE Alu 0 150 3 4 1616 769 217 114 25 chr4 135205191 135205309 -20424811 - B4 SINE B4 -35 257 126 4 1616 186 43 0 0 chr4 135205309 135205332 -20424788 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1616 769 217 114 25 chr4 135205332 135205449 -20424671 - B4 SINE B4 -167 125 2 4 1616 205 156 67 0 chr4 135205450 135205495 -20424625 + C-rich Low_complexity Low_complexity 2 49 0 4 1616 1017 82 13 33 chr4 135207304 135207443 -20422677 + B1_Mus1 SINE Alu 1 135 -13 4 1616 279 0 0 0 chr4 135207443 135207474 -20422646 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 1616 1017 82 13 33 chr4 135207474 135207485 -20422635 + B1_Mus1 SINE Alu 136 148 0 4 1616 1131 201 33 5 chr4 135207639 135207849 -20422271 + B3 SINE B2 1 216 0 4 1616 533 219 16 58 chr4 135207948 135208069 -20422051 + PB1D10 SINE Alu 1 116 -1 4 1616 266 50 0 24 chr4 135208069 135208110 -20422010 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 4 1616 245 369 40 35 chr4 135208161 135208363 -20421757 - Tigger15a DNA TcMar -447 268 66 4 1616 238 67 44 0 chr4 135208514 135208559 -20421561 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1616 246 269 122 28 chr4 135208802 135208909 -20421211 - PB1D10 SINE Alu 0 117 1 4 1616 293 351 26 49 chr4 135208977 135209158 -20420962 - MIRb SINE MIR -60 208 23 4 1616 412 266 0 72 chr4 135209751 135209889 -20420231 - MER117 DNA MER1_type -38 159 32 4 1616 578 320 77 34 chr4 135209899 135210132 -20419988 - MLT1H1 LTR MaLR -24 531 289 4 1616 1094 226 5 0 chr4 135210316 135210520 -20419600 - B3 SINE B2 -11 205 1 4 1616 451 220 15 99 chr4 135210530 135210661 -20419459 - ID_B1 SINE B4 -8 216 97 4 1616 186 324 202 19 chr4 135212008 135212112 -20418008 - MIR SINE MIR -117 145 23 4 1616 207 0 0 0 chr4 135212847 135212870 -20417250 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 4 1616 360 247 28 62 chr4 135213029 135213206 -20416914 + L2a LINE L2 2990 3160 -266 4 1616 475 272 184 0 chr4 135213344 135213480 -20416640 + RSINE1 SINE B4 3 163 -2 4 1616 257 286 0 106 chr4 135213612 135213706 -20416414 - PB1D10 SINE Alu -27 90 7 4 1616 755 281 61 30 chr4 135213797 135214028 -20416092 + B4 SINE B4 45 282 -10 4 1616 342 45 0 0 chr4 135214058 135214102 -20416018 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1616 207 330 70 30 chr4 135214674 135214774 -20415346 - MIRb SINE MIR -138 130 27 4 1616 384 233 18 55 chr4 135215971 135216080 -20414040 + PB1D10 SINE Alu 12 116 -1 4 1616 1187 68 0 0 chr4 135216097 135216244 -20413876 - B1_Mus1 SINE Alu 0 148 2 4 1616 465 288 3 0 chr4 135216554 135216846 -20413274 + (TG)n Simple_repeat Simple_repeat 1 293 0 4 1616 230 150 0 62 chr4 135218203 135218267 -20411853 + C-rich Low_complexity Low_complexity 5 64 0 4 1616 305 301 0 0 chr4 135218568 135218641 -20411479 - ID4_ SINE ID -8 75 3 4 1616 511 300 48 73 chr4 135218724 135218857 -20411263 - B4 SINE B4 -17 275 134 4 1616 306 0 0 0 chr4 135218857 135218891 -20411229 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1616 511 300 48 73 chr4 135218891 135219030 -20411090 - B4 SINE B4 -159 133 10 4 1616 396 0 0 0 chr4 135219039 135219083 -20411037 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1616 347 235 12 0 chr4 135219088 135219169 -20410951 - B4A SINE B4 -202 90 9 5 1616 23 33 0 0 chr4 135219186 135219216 -20410904 + AT_rich Low_complexity Low_complexity 1 30 0 5 1616 333 190 16 32 chr4 135219216 135219341 -20410779 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 5 1616 897 225 4 70 chr4 135219348 135219577 -20410543 - B3 SINE B2 -2 214 1 5 1616 766 271 47 0 chr4 135219721 135219913 -20410207 + ID_B1 SINE B4 8 208 -16 5 1616 189 0 0 0 chr4 135219928 135219949 -20410171 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1616 894 106 0 0 chr4 135219962 135220094 -20410026 + (GAAAA)n Simple_repeat Simple_repeat 5 136 0 5 1616 463 315 0 0 chr4 135220100 135220211 -20409909 + PB1D10 SINE Alu 2 112 -5 5 1616 275 317 12 0 chr4 135220277 135220359 -20409761 + ID4 SINE ID 1 83 0 5 1616 440 122 12 0 chr4 135221003 135221085 -20409035 + (TATG)n Simple_repeat Simple_repeat 4 86 0 5 1616 248 53 26 0 chr4 135221118 135221156 -20408964 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1616 848 174 150 31 chr4 135221271 135221497 -20408623 + B4A SINE B4 1 253 -39 5 1616 228 67 0 0 chr4 135221602 135221632 -20408488 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 5 1616 184 311 47 83 chr4 135222932 135223125 -20406995 + L2 LINE L2 2563 2748 -671 5 1616 27 0 0 0 chr4 135223437 135223464 -20406656 + GC_rich Low_complexity Low_complexity 1 27 0 5 1616 351 44 0 0 chr4 135224079 135224124 -20405996 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1616 354 98 0 0 chr4 135224138 135224189 -20405931 + (TTTTC)n Simple_repeat Simple_repeat 4 54 0 5 1616 1237 41 0 0 chr4 135224189 135224335 -20405785 - B1_Mus2 SINE Alu 0 147 2 5 1616 5046 174 99 57 chr4 135224534 135225718 -20404402 - RLTR21 LTR ERVK -267 1305 73 5 1616 1182 162 25 20 chr4 135225713 135226035 -20404085 - RMER17A2 LTR ERVK -703 203 1 5 1616 382 253 77 0 chr4 135226035 135226117 -20404003 - RLTR21 LTR ERVK -1483 89 1 5 1616 277 322 20 27 chr4 135226361 135226508 -20403612 + L1M5 LINE L1 5535 5680 -560 5 1616 1244 155 14 33 chr4 135227383 135227597 -20402523 - B3 SINE B2 -6 210 1 5 1616 477 309 62 73 chr4 135227599 135228049 -20402071 - L1MB7 LINE L1 -45 6139 5695 5 1616 4477 155 57 37 chr4 135228192 135229082 -20401038 + RMER13B LTR ERVK 1 908 0 5 1616 180 0 0 0 chr4 135229350 135229370 -20400750 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 5 1616 310 250 79 0 chr4 135229589 135229665 -20400455 + MLT1K LTR MaLR 170 251 -344 5 1616 633 237 7 43 chr4 135229870 135230011 -20400109 - B4A SINE B4 0 292 157 5 1616 180 0 0 0 chr4 135230157 135230177 -20399943 + (TGG)n Simple_repeat Simple_repeat 2 21 0 5 1616 1050 270 38 41 chr4 135230231 135230548 -20399572 + MTE2b LTR MaLR 2 317 -62 5 1616 2858 109 32 7 chr4 135230941 135231375 -20398745 + BGLII_A LTR ERVK 1 445 0 5 1616 356 281 127 182 chr4 135231753 135232122 -20397998 + RMER20B LTR ERVK 234 582 -45 5 1616 346 164 0 47 chr4 135232224 135232288 -20397832 + MTE2b LTR MaLR 311 371 -8 5 1616 246 32 0 0 chr4 135232753 135232784 -20397336 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1616 1136 51 7 0 chr4 135232784 135232922 -20397198 - B1_Mm SINE Alu -8 139 1 5 1616 323 286 247 45 chr4 135232999 135233222 -20396898 + MLT1A0 LTR MaLR 54 321 -44 5 1616 630 287 54 5 chr4 135233310 135233513 -20396607 - ID_B1 SINE B4 -7 217 5 5 1616 356 328 31 190 chr4 135233518 135233902 -20396218 + ORR1E LTR MaLR 32 354 -5 5 1616 239 264 54 27 chr4 135235546 135235620 -20394500 + MIRb SINE MIR 20 95 -173 5 1616 367 318 44 69 chr4 135235827 135235986 -20394134 + ID_B1 SINE B4 63 217 -7 5 1616 314 291 19 37 chr4 135236302 135236409 -20393711 + Charlie13a DNA Charlie 1061 1165 -349 5 1616 367 148 0 47 chr4 135236655 135236740 -20393380 + G-rich Low_complexity Low_complexity 4 84 0 5 1616 23 33 0 0 chr4 135237115 135237145 -20392975 + AT_rich Low_complexity Low_complexity 1 30 0 5 1616 272 182 9 0 chr4 135237225 135237285 -20392835 + B1F SINE Alu 65 129 -20 5 1616 310 223 0 45 chr4 135237292 135237371 -20392749 + ID4_ SINE ID 21 90 -62 5 1616 986 199 61 0 chr4 135237378 135237559 -20392561 + B3 SINE B2 1 192 -24 5 1616 643 203 47 0 chr4 135237563 135237711 -20392409 + Lx5 LINE L1 4957 5111 -769 5 1616 3878 127 120 30 chr4 135237711 135238405 -20391715 + RMER6A LTR ERVK 1 756 0 5 1616 4456 192 43 19 chr4 135238407 135239334 -20390786 + Lx5 LINE L1 5108 6115 -935 5 1616 240 35 0 0 chr4 135239334 135239363 -20390757 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1616 4456 228 90 59 chr4 135239363 135240307 -20389813 + Lx5 LINE L1 6116 7681 -15 5 1616 375 260 0 0 chr4 135241316 135241393 -20388727 - ID_B1 SINE B4 -53 171 95 5 1616 414 0 0 0 chr4 135241778 135241824 -20388296 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1616 181 214 23 23 chr4 135243143 135243186 -20386934 - MIRm SINE MIR -121 155 113 5 1616 376 279 23 0 chr4 135243962 135244048 -20386072 + B1F SINE Alu 2 89 -60 5 1616 321 331 147 0 chr4 135244076 135244212 -20385908 + RSINE1 SINE B4 2 157 -8 5 1616 430 181 31 101 chr4 135244239 135244368 -20385752 + PB1D9 SINE Alu 1 120 0 5 1616 193 89 0 43 chr4 135244369 135244416 -20385704 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 1616 224 249 7 24 chr4 135244652 135244724 -20385396 - L2c LINE L2 -229 3158 3085 5 1616 1315 87 40 0 chr4 135244948 135245121 -20384999 + B2_Mm2 SINE B2 2 181 -14 5 1616 424 326 48 77 chr4 135245553 135245865 -20384255 - ORR1E LTR MaLR -56 303 1 5 1616 446 289 8 40 chr4 135245865 135245989 -20384131 - MER54B LTR ERVL -112 681 562 5 1616 204 179 0 0 chr4 135246051 135246090 -20384030 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1616 484 306 23 0 chr4 135246581 135246754 -20383366 + (TGGG)n Simple_repeat Simple_repeat 2 178 0 5 1616 1209 206 186 6 chr4 135247057 135247369 -20382751 - ORR1D2 LTR MaLR 0 370 3 5 1616 1115 38 0 36 chr4 135247588 135247753 -20382367 + (TTCCC)n Simple_repeat Simple_repeat 2 160 0 5 1616 387 0 0 0 chr4 135247753 135247796 -20382324 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 5 1616 296 225 13 53 chr4 135247796 135247860 -20382260 - ID4 SINE ID -8 75 13 5 1616 1277 122 53 66 chr4 135248231 135248459 -20381661 - URR1B DNA MER1_type 0 225 1 5 1616 245 344 58 11 chr4 135248619 135248810 -20381310 - L1ME2 LINE L1 -242 5922 5723 5 1616 865 293 110 16 chr4 135248854 135249173 -20380947 - MLT-int LTR MaLR -14 1721 1373 5 1616 621 200 9 0 chr4 135249215 135249325 -20380795 + PB1D9 SINE Alu 10 120 0 5 1616 209 0 97 0 chr4 135249327 135249358 -20380762 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1616 1066 87 7 32 chr4 135249376 135249530 -20380590 + B1_Mur4 SINE Alu 1 150 0 5 1616 3493 129 34 20 chr4 135249584 135250146 -20379974 - RLTR20B3 LTR ERVK -7 570 1 5 1616 4434 130 30 9 chr4 135250146 135250912 -20379208 - MYSERV16_I-int LTR ERVK 0 2326 1545 5 1616 410 0 0 20 chr4 135250924 135250975 -20379145 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 5 1616 6207 193 52 51 chr4 135250975 135252468 -20377652 - MYSERV16_I-int LTR ERVK -831 1495 1 5 1616 565 197 68 8 chr4 135252808 135252941 -20377179 - B1_Mur1 SINE Alu -7 142 2 5 1616 296 313 0 12 chr4 135252954 135253038 -20377082 - B4 SINE B4 -209 83 1 5 1616 444 332 121 42 chr4 135253106 135253395 -20376725 - MLT1A0 LTR MaLR -35 330 19 5 1616 220 277 138 75 chr4 135253414 135253574 -20376546 + L2a LINE L2 2849 3018 -401 5 1616 2151 195 33 20 chr4 135253606 135254004 -20376116 - MTD LTR MaLR -14 405 3 5 1616 226 317 57 47 chr4 135254189 135254295 -20375825 + L2a LINE L2 3285 3391 -35 5 1616 192 319 0 0 chr4 135254359 135254406 -20375714 + MIRm SINE MIR 203 249 -27 5 1616 181 292 89 11 chr4 135254489 135254579 -20375541 - MIRb SINE MIR -124 144 48 5 1616 641 239 92 25 chr4 135254897 135255060 -20375060 + B3A SINE B2 22 195 -3 5 1616 198 0 0 0 chr4 135255118 135255140 -20374980 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1616 341 269 98 92 chr4 135255155 135255319 -20374801 - B4 SINE B4 0 292 128 5 1616 227 303 43 52 chr4 135255379 135255494 -20374626 - MLT1E2 LTR MaLR -250 377 264 5 1616 186 43 0 0 chr4 135255500 135255523 -20374597 + (C)n Simple_repeat Simple_repeat 1 23 0 5 1616 411 358 181 57 chr4 135255708 135256223 -20373897 - MLT1E2-int LTR MaLR -2 1487 909 5 1616 989 114 84 0 chr4 135256601 135256768 -20373352 + URR1A DNA MER1_type 46 226 0 5 1616 416 264 9 9 chr4 135256840 135256947 -20373173 + B4A SINE B4 180 286 -6 5 1616 1152 111 0 0 chr4 135257621 135257801 -20372319 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1616 487 198 36 28 chr4 135257808 135257908 -20372212 - B1_Mur1 SINE Alu -15 134 11 5 1616 823 199 132 15 chr4 135257903 135258107 -20372013 - B4A SINE B4 -63 229 2 5 1616 423 222 25 92 chr4 135258593 135258712 -20371408 - PB1D10 SINE Alu -6 111 1 5 1616 313 254 0 0 chr4 135258809 135258872 -20371248 - RSINE1 SINE B4 -15 150 88 5 1616 270 373 15 38 chr4 135258955 135259086 -20371034 + YREP_Mm Unknown Unknown 167 294 -1518 5 1616 720 240 10 18 chr4 135258975 135259136 -20370984 - ID_B1 SINE B4 -10 214 63 5 1616 336 289 149 0 chr4 135259865 135259979 -20370141 + MIR SINE MIR 13 143 -119 5 1616 381 102 0 0 chr4 135261612 135261671 -20368449 + (GGA)n Simple_repeat Simple_repeat 2 60 0 5 1616 252 286 75 21 chr4 135262147 135262240 -20367880 + MIRb SINE MIR 47 144 -124 5 1616 261 0 0 0 chr4 135262610 135262639 -20367481 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1616 1154 178 52 9 chr4 135262869 135263079 -20367041 - URR1B DNA MER1_type 0 225 7 5 1616 288 0 0 0 chr4 135263393 135263425 -20366695 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1616 228 387 16 16 chr4 135264186 135264312 -20365808 - LTR16C LTR ERVL -75 414 289 6 1616 263 274 0 99 chr4 135264377 135264458 -20365662 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 6 1616 325 233 0 0 chr4 135264401 135264461 -20365659 - ID4_ SINE ID -20 63 4 6 1616 633 219 36 7 chr4 135264550 135264688 -20365432 - B1F SINE Alu -7 142 1 6 1616 356 247 13 13 chr4 135265137 135265215 -20364905 - B3 SINE B2 -60 156 79 6 1616 444 19 0 0 chr4 135265965 135266018 -20364102 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1617 949 122 14 0 chr4 135266587 135266734 -20363386 - URR1B DNA MER1_type 0 225 77 6 1617 629 179 0 0 chr4 135266854 135266960 -20363160 - B2_Mm2 SINE B2 -88 107 2 6 1617 291 174 319 0 chr4 135266960 135267029 -20363091 - URR1B DNA MER1_type -134 91 1 6 1617 734 219 28 84 chr4 135267400 135267649 -20362471 + Lx8 LINE L1 6879 7113 -360 6 1617 440 322 96 52 chr4 135267904 135268176 -20361944 - RLTR12B LTR ERVK -231 297 14 6 1617 352 295 100 78 chr4 135268317 135268497 -20361623 - RMER2 LTR ERV1 -55 512 329 6 1617 402 250 27 63 chr4 135269368 135269410 -20360710 - B3A SINE B2 -6 192 150 6 1617 398 65 0 16 chr4 135269410 135269473 -20360647 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1617 333 0 0 0 chr4 135269473 135269509 -20360611 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1617 402 250 27 63 chr4 135269509 135269576 -20360544 - B3A SINE B2 -49 149 87 6 1617 839 238 139 27 chr4 135269597 135269641 -20360479 + B4A SINE B4 1 52 -240 6 1617 3426 129 48 23 chr4 135269641 135270210 -20359910 + RMER4B LTR ERVK 1 583 -2 6 1617 839 238 139 27 chr4 135270210 135270424 -20359696 + B4A SINE B4 53 288 -4 6 1617 207 0 0 0 chr4 135270666 135270689 -20359431 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1617 240 0 0 70 chr4 135270986 135271029 -20359091 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1617 381 235 49 39 chr4 135271256 135271358 -20358762 + RCHARR1 DNA MER1_type 3 105 -869 6 1617 298 305 115 10 chr4 135271408 135271504 -20358616 + RCHARR1 DNA MER1_type 222 327 -647 6 1617 321 26 0 0 chr4 135271515 135271553 -20358567 + (TTTC)n Simple_repeat Simple_repeat 4 41 0 6 1617 400 91 0 0 chr4 135271562 135271617 -20358503 - ORR1B1 LTR MaLR 0 394 340 6 1617 24 0 0 0 chr4 135271617 135271641 -20358479 + AT_rich Low_complexity Low_complexity 1 24 0 6 1617 1836 132 60 90 chr4 135272605 135272970 -20357150 - ORR1B1 LTR MaLR -40 354 1 6 1617 689 213 0 38 chr4 135272981 135273113 -20357007 - RSINE1 SINE B4 -35 130 4 6 1617 303 239 28 0 chr4 135273138 135273209 -20356911 + RCHARR1 DNA MER1_type 323 395 -579 6 1617 5063 181 24 21 chr4 135273224 135274218 -20355902 + RMER1B Other Other 31 1027 -39 6 1617 325 303 74 27 chr4 135274218 135274367 -20355753 + RCHARR1 DNA MER1_type 360 515 -459 6 1617 620 299 12 6 chr4 135274363 135274528 -20355592 - B3A SINE B2 -4 194 29 6 1617 1002 251 93 63 chr4 135274535 135274901 -20355219 + RCHARR1 DNA MER1_type 467 843 -131 6 1617 1301 99 10 35 chr4 135274908 135275107 -20355013 + B2_Mm2 SINE B2 1 194 -1 6 1617 317 189 168 69 chr4 135275101 135275164 -20354956 + RCHARR1 DNA MER1_type 826 893 -81 6 1617 314 61 20 0 chr4 135275164 135275213 -20354907 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1617 317 189 168 69 chr4 135275213 135275250 -20354870 + RCHARR1 DNA MER1_type 894 946 -28 6 1617 2416 95 35 0 chr4 135275250 135275566 -20354554 + ORR1A2 LTR MaLR 1 327 0 6 1617 317 189 168 69 chr4 135275566 135275595 -20354525 + RCHARR1 DNA MER1_type 947 969 -5 6 1617 262 146 0 0 chr4 135275785 135275826 -20354294 - MTC LTR MaLR 0 421 381 6 1617 2055 116 68 12 chr4 135275831 135276118 -20354002 + ORR1B1 LTR MaLR 41 345 -49 6 1617 2329 164 34 24 chr4 135276118 135276531 -20353589 - MTC LTR MaLR 0 421 5 6 1617 204 309 149 0 chr4 135276617 135276711 -20353409 - MIRc SINE MIR -118 150 43 6 1617 188 343 43 0 chr4 135276768 135276838 -20353282 - MIR3 SINE MIR -19 189 117 6 1617 2473 70 6 0 chr4 135276903 135277219 -20352901 - ORR1A2 LTR MaLR -9 318 1 6 1617 603 219 86 0 chr4 135277518 135277646 -20352474 - B1F1 SINE Alu 0 149 11 6 1617 291 247 31 92 chr4 135277574 135277672 -20352448 - MT2B2 LTR ERVL -344 240 149 6 1617 210 251 36 0 chr4 135277723 135277793 -20352327 - L2b LINE L2 0 3387 3313 6 1617 1113 209 29 0 chr4 135278562 135278768 -20351352 - B3 SINE B2 0 216 5 6 1617 185 243 99 14 chr4 135278865 135278936 -20351184 - L2b LINE L2 -266 3109 3033 6 1617 1857 179 41 28 chr4 135278994 135279357 -20350763 + ORR1D2 LTR MaLR 3 370 0 6 1617 250 167 0 72 chr4 135279537 135279731 -20350389 + (CTGGGG)n Simple_repeat Simple_repeat 1 180 0 6 1617 233 125 0 74 chr4 135279786 135279881 -20350239 + (CTGGGG)n Simple_repeat Simple_repeat 1 88 0 6 1617 811 278 166 3 chr4 135279977 135280262 -20349858 - MTE2b LTR MaLR 0 379 45 6 1617 1057 146 70 5 chr4 135280262 135280462 -20349658 - ORR1C2 LTR MaLR 0 384 172 6 1617 232 174 35 0 chr4 135280463 135280549 -20349571 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 6 1617 886 235 20 32 chr4 135280549 135280800 -20349320 - ORR1C2 LTR MaLR -119 265 18 6 1617 216 0 0 0 chr4 135280941 135280965 -20349155 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1617 252 0 0 0 chr4 135280965 135280992 -20349128 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1617 256 265 126 77 chr4 135281034 135281177 -20348943 - RSINE1 SINE B4 0 165 16 6 1617 820 246 57 35 chr4 135281201 135281545 -20348575 - MTD LTR MaLR 0 419 24 6 1617 327 321 62 79 chr4 135281956 135282196 -20347924 - L1M2 LINE L1 -2821 3322 3087 6 1617 561 231 101 34 chr4 135282285 135282464 -20347656 + MTD LTR MaLR 229 419 0 6 1617 376 246 105 145 chr4 135283236 135283464 -20346656 - B4 SINE B4 -73 219 1 6 1617 489 114 208 9 chr4 135284876 135284982 -20345138 + B1_Mus2 SINE Alu 21 147 0 6 1617 184 280 115 39 chr4 135286896 135287000 -20343120 + MIRb SINE MIR 43 154 -114 6 1617 206 361 18 18 chr4 135287106 135287216 -20342904 - MIRb SINE MIR -81 187 78 6 1617 587 221 12 20 chr4 135287469 135287648 -20342472 + B3 SINE B2 9 186 -9 6 1617 288 288 12 12 chr4 135287786 135287867 -20342253 + ID4_ SINE ID 2 82 -1 6 1617 622 296 47 23 chr4 135287949 135288205 -20341915 + L1MB7 LINE L1 5631 5892 -292 6 1617 1288 53 0 6 chr4 135288205 135288376 -20341744 + B2_Mm2 SINE B2 2 171 -24 6 1617 349 318 24 79 chr4 135288394 135288647 -20341473 + L1MB7 LINE L1 5833 6071 -113 6 1617 210 247 149 23 chr4 135289426 135289513 -20340607 + MIRc SINE MIR 52 149 -119 6 1617 1459 68 11 0 chr4 135289768 135289958 -20340162 + B2_Mm1t SINE B2 2 193 0 6 1617 379 355 99 0 chr4 135290873 135291045 -20339075 + MER2 DNA MER2_type 151 339 -6 6 1617 216 336 107 18 chr4 135291085 135291197 -20338923 + L2b LINE L2 3226 3347 -28 6 1617 282 29 0 0 chr4 135291205 135291240 -20338880 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 6 1617 379 278 56 0 chr4 135291315 135291394 -20338726 - B1F1 SINE Alu -8 141 57 6 1617 986 233 161 23 chr4 135291394 135291693 -20338427 - MTD LTR MaLR 0 419 80 6 1617 349 292 136 0 chr4 135291735 135291889 -20338231 - L1ME4a LINE L1 -223 5901 5727 6 1617 692 275 0 24 chr4 135291979 135292143 -20337977 - RSINE1 SINE B4 -5 160 1 6 1617 313 308 71 111 chr4 135292354 135292580 -20337540 + B4A SINE B4 3 219 -73 6 1617 1032 184 60 15 chr4 135292593 135292792 -20337328 + B3 SINE B2 3 210 -6 6 1617 324 0 0 0 chr4 135292813 135292849 -20337271 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1617 477 0 0 0 chr4 135293568 135293621 -20336499 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1617 369 196 290 0 chr4 135293777 135293884 -20336236 - B1F SINE Alu 0 149 12 6 1617 666 313 44 0 chr4 135293993 135294175 -20335945 + ID_B1 SINE B4 1 190 -34 6 1617 247 316 32 45 chr4 135294468 135294599 -20335521 - MIRb SINE MIR -36 226 91 6 1617 322 339 63 49 chr4 135294840 135295054 -20335066 - MTEa LTR MaLR -4 415 201 6 1617 277 242 37 112 chr4 135295163 135295270 -20334850 - MTEa LTR MaLR -277 102 4 6 1617 22 0 0 0 chr4 135295521 135295543 -20334577 + AT_rich Low_complexity Low_complexity 1 22 0 6 1617 277 312 9 9 chr4 135295554 135295695 -20334425 - L1MEb LINE L1 -3289 2857 2717 6 1617 297 183 0 0 chr4 135295816 135295876 -20334244 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1617 2438 191 35 19 chr4 135295973 135296458 -20333662 - RMER20A LTR ERVK -9 507 15 6 1617 294 294 128 10 chr4 135296463 135296659 -20333461 - L1MEb LINE L1 -3629 2517 2299 6 1617 314 194 14 0 chr4 135296667 135296739 -20333381 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1617 724 230 213 0 chr4 135296750 135296924 -20333196 - B3 SINE B2 -5 211 1 6 1617 379 147 0 0 chr4 135297220 135297288 -20332832 - RSINE1 SINE B4 -94 71 4 6 1617 234 350 0 24 chr4 135297339 135297421 -20332699 - ID2 SINE ID -2 81 2 6 1617 768 148 67 0 chr4 135297461 135297596 -20332524 - B1_Mur4 SINE Alu 0 150 7 6 1617 234 254 32 0 chr4 135297597 135297660 -20332460 - L1MB7 LINE L1 -44 6140 6076 6 1617 494 271 128 96 chr4 135297702 135297840 -20332280 - L1MEb LINE L1 -5133 1003 887 6 1617 1163 47 0 45 chr4 135297840 135297856 -20332264 - B1_Mus1 SINE Alu 0 148 138 6 1617 225 0 0 0 chr4 135297856 135297881 -20332239 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1617 1163 47 0 45 chr4 135297881 135298019 -20332101 - B1_Mus1 SINE Alu -11 137 1 6 1617 494 271 128 96 chr4 135298019 135298039 -20332081 - L1MEb LINE L1 -5250 886 874 6 1617 795 228 6 24 chr4 135298039 135298205 -20331915 - RSINE1 SINE B4 0 165 3 6 1617 494 271 128 96 chr4 135298205 135298429 -20331691 - L1MEb LINE L1 -5263 873 608 6 1617 324 0 0 0 chr4 135298445 135298481 -20331639 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 6 1617 420 280 10 0 chr4 135298486 135298586 -20331534 - B1F SINE Alu -15 134 34 6 1617 565 340 44 27 chr4 135298624 135298920 -20331200 - L1MEb LINE L1 -5575 561 261 6 1617 297 304 27 86 chr4 135299029 135299216 -20330904 - MTEa LTR MaLR -2 377 202 6 1617 673 244 75 0 chr4 135299224 135299384 -20330736 + B3A SINE B2 2 173 -25 6 1617 439 195 17 0 chr4 135300227 135300345 -20329775 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 1617 573 189 0 0 chr4 135300396 135300565 -20329555 + (TG)n Simple_repeat Simple_repeat 2 170 0 6 1617 407 226 0 0 chr4 135301954 135302038 -20328082 - PB1D10 SINE Alu -2 115 32 6 1617 303 169 0 0 chr4 135302253 135302312 -20327808 + MIRc SINE MIR 69 127 -141 6 1617 918 210 124 10 chr4 135303206 135303408 -20326712 - URR1B DNA MER1_type 0 225 1 6 1617 639 263 128 10 chr4 135303683 135303879 -20326241 - ID_B1 SINE B4 -2 222 4 6 1617 344 284 31 0 chr4 135304436 135304532 -20325588 + PB1D10 SINE Alu 15 110 -7 6 1617 216 0 0 0 chr4 135304551 135304575 -20325545 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1617 256 148 16 16 chr4 135304577 135304639 -20325481 + GA-rich Low_complexity Low_complexity 3 64 0 7 1617 687 246 93 16 chr4 135304730 135304912 -20325208 + ID_B1 SINE B4 2 197 -27 7 1617 438 157 0 0 chr4 135304913 135304996 -20325124 + (CA)n Simple_repeat Simple_repeat 1 83 0 7 1617 777 159 65 0 chr4 135305013 135305151 -20324969 + B1_Mur2 SINE Alu 1 147 -2 7 1617 330 87 0 0 chr4 135305223 135305269 -20324851 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 7 1617 320 229 24 12 chr4 135305714 135305798 -20324322 - PB1D10 SINE Alu -7 110 26 7 1617 279 0 0 0 chr4 135305903 135305934 -20324186 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1617 663 337 42 25 chr4 135305949 135306235 -20323885 + B4A SINE B4 2 292 0 7 1617 241 348 98 14 chr4 135307894 135308037 -20322083 + MIRc SINE MIR 73 227 -41 7 1617 333 312 80 31 chr4 135309405 135309567 -20320553 - RMER30 DNA MER1_type -7 195 26 7 1617 275 301 226 0 chr4 135309568 135309714 -20320406 - Tigger7 DNA MER2_type -42 2449 2271 7 1617 330 26 0 0 chr4 135309859 135309898 -20320222 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1617 261 0 0 0 chr4 135309898 135309927 -20320193 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1617 1614 218 138 38 chr4 135309956 135310467 -20319653 + RMER4B LTR ERVK 15 576 -9 7 1617 345 82 0 0 chr4 135310491 135310540 -20319580 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1617 860 226 196 0 chr4 135310550 135310780 -20319340 - B4A SINE B4 -16 276 2 7 1617 254 329 0 0 chr4 135310780 135310853 -20319267 + MLT1A1 LTR MaLR 36 108 -300 7 1617 3097 126 2 0 chr4 135310932 135311352 -20318768 + MTC LTR MaLR 1 421 0 7 1617 22 0 0 0 chr4 135311600 135311622 -20318498 + AT_rich Low_complexity Low_complexity 1 22 0 7 1617 297 331 7 40 chr4 135312673 135312821 -20317299 + YREP_Mm Unknown Unknown 169 311 -1501 7 1617 644 259 0 0 chr4 135312691 135312826 -20317294 - ID_B1 SINE B4 -9 215 81 7 1617 180 229 0 0 chr4 135312935 135312970 -20317150 - MIRc SINE MIR -122 146 112 7 1617 469 235 82 0 chr4 135312979 135313077 -20317043 + PB1D10 SINE Alu 2 107 -10 7 1617 240 35 0 0 chr4 135313082 135313111 -20317009 + (TAA)n Simple_repeat Simple_repeat 2 30 0 7 1617 453 259 19 0 chr4 135313441 135313549 -20316571 - PB1D7 SINE Alu -9 111 2 7 1617 1343 107 5 5 chr4 135313761 135313949 -20316171 - B2_Mm2 SINE B2 -6 189 2 7 1617 485 259 19 0 chr4 135314031 135314139 -20315981 + PB1D10 SINE Alu 6 115 -2 7 1617 334 232 24 12 chr4 135314157 135314240 -20315880 + B3 SINE B2 2 85 -131 7 1617 382 238 68 34 chr4 135314447 135314568 -20315552 + B3 SINE B2 83 207 -9 7 1617 373 23 0 0 chr4 135314568 135314611 -20315509 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1617 953 86 14 0 chr4 135314611 135314751 -20315369 + (GGAA)n Simple_repeat Simple_repeat 4 145 0 7 1617 441 196 26 55 chr4 135315918 135316319 -20313801 + (TG)n Simple_repeat Simple_repeat 1 389 0 7 1617 196 130 0 53 chr4 135316335 135316392 -20313728 + (TATG)n Simple_repeat Simple_repeat 4 57 0 7 1617 788 140 108 12 chr4 135318140 135318306 -20311814 + URR1A DNA MER1_type 45 226 0 7 1617 411 21 0 0 chr4 135319049 135319097 -20311023 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 7 1617 684 235 38 156 chr4 135320183 135320320 -20309800 - ID_B1 SINE B4 -15 209 95 7 1617 1217 42 0 0 chr4 135320320 135320463 -20309657 - B1_Mm SINE Alu 0 147 5 7 1617 684 235 38 156 chr4 135320463 135320562 -20309558 - ID_B1 SINE B4 -130 94 1 7 1617 183 326 53 21 chr4 135320954 135321048 -20309072 + MIRm SINE MIR 47 143 -133 7 1617 206 244 0 0 chr4 135321253 135321300 -20308820 - MIR3 SINE MIR -101 161 116 7 1617 240 246 0 47 chr4 135322221 135322285 -20307835 + PB1D10 SINE Alu 1 61 -56 7 1617 232 51 67 17 chr4 135322884 135322944 -20307176 + (TTG)n Simple_repeat Simple_repeat 2 64 0 7 1617 459 341 17 52 chr4 135323712 135323885 -20306235 + B3A SINE B2 2 168 -30 7 1617 818 97 59 15 chr4 135323968 135324104 -20306016 + B2_Mm1t SINE B2 37 178 -15 7 1617 243 0 0 0 chr4 135324104 135324131 -20305989 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1617 1179 41 0 26 chr4 135324192 135324344 -20305776 + B1_Mus1 SINE Alu 1 148 0 7 1617 249 155 0 0 chr4 135324351 135324409 -20305711 + A-rich Low_complexity Low_complexity 2 59 0 7 1617 248 410 0 0 chr4 135324473 135324578 -20305542 + ID_B1 SINE B4 72 176 -48 7 1617 378 340 0 0 chr4 135324490 135324593 -20305527 + PB1D10 SINE Alu 8 110 -7 7 1617 1220 171 41 23 chr4 135325385 135325606 -20304514 - URR1B DNA MER1_type 0 225 1 7 1617 417 312 0 0 chr4 135325838 135325950 -20304170 + PB1D10 SINE Alu 1 112 -5 7 1617 261 237 12 50 chr4 135325953 135326033 -20304087 + GA-rich Low_complexity Low_complexity 1 77 0 7 1617 628 252 0 7 chr4 135326040 135326176 -20303944 + ID_B1 SINE B4 82 216 -8 7 1617 198 292 0 0 chr4 135327150 135327198 -20302922 + MIRc SINE MIR 78 125 -143 7 1617 244 271 98 37 chr4 135328203 135328330 -20301790 + MIRb SINE MIR 5 152 -116 7 1617 654 180 0 0 chr4 135328493 135328671 -20301449 + CT-rich Low_complexity Low_complexity 1 178 0 7 1617 204 205 0 0 chr4 135328895 135328934 -20301186 + CT-rich Low_complexity Low_complexity 4 42 0 7 1617 444 303 49 34 chr4 135329395 135329600 -20300520 - MIR SINE MIR -6 256 49 7 1617 376 252 0 118 chr4 135329902 135329926 -20300194 + MT2B LTR ERVL 146 153 -448 7 1617 918 131 0 14 chr4 135329926 135330073 -20300047 + B1_Mur3 SINE Alu 4 148 -1 7 1617 465 267 22 30 chr4 135330905 135330967 -20299153 + ID SINE ID 21 81 -143 7 1617 283 315 54 0 chr4 135330967 135331078 -20299042 + PB1D10 SINE Alu 1 117 0 7 1617 224 320 58 10 chr4 135331864 135331978 -20298142 + MIR SINE MIR 44 169 -107 7 1617 1820 223 65 18 chr4 135332500 135332989 -20297131 - RLTR20A2 LTR ERVK 0 578 67 7 1617 1826 104 134 16 chr4 135333375 135333696 -20296424 - RLTR15 LTR ERVK 0 359 1 7 1617 407 279 10 2 chr4 135334223 135334338 -20295782 - MTE2b LTR MaLR 0 379 265 7 1617 692 249 110 6 chr4 135334361 135334543 -20295577 - MTE2b LTR MaLR -169 210 10 7 1617 1308 66 43 16 chr4 135334770 135334954 -20295166 - B2_Mm2 SINE B2 -6 189 1 7 1617 185 389 18 48 chr4 135335507 135335672 -20294448 + MIR3 SINE MIR 18 177 -31 7 1617 697 250 92 23 chr4 135336684 135336901 -20293219 + B4A SINE B4 61 292 0 7 1617 298 269 7 139 chr4 135336975 135337126 -20292994 + MIR SINE MIR 29 159 -103 7 1617 351 44 0 0 chr4 135337206 135337251 -20292869 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1617 227 31 0 30 chr4 135337605 135337638 -20292482 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 7 1617 195 314 71 56 chr4 135337783 135337983 -20292137 - L2c LINE L2 -295 3131 2932 7 1617 775 181 53 11 chr4 135338080 135338243 -20291877 + ID_B1 SINE B4 82 244 -48 7 1617 220 245 0 0 chr4 135338293 135338342 -20291778 + B3A SINE B2 96 144 -54 7 1617 213 39 0 0 chr4 135338352 135338378 -20291742 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1617 25 31 0 0 chr4 135338383 135338415 -20291705 + AT_rich Low_complexity Low_complexity 1 32 0 7 1617 213 117 117 0 chr4 135338429 135338489 -20291631 + GA-rich Low_complexity Low_complexity 5 71 0 7 1617 251 279 80 67 chr4 135338515 135338665 -20291455 - L2c LINE L2 -675 2744 2593 7 1617 357 125 0 0 chr4 135339749 135339805 -20290315 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1617 1454 166 222 3 chr4 135339851 135340127 -20289993 - ORR1C2 LTR MaLR 0 384 62 7 1617 1446 40 0 0 chr4 135340127 135340428 -20289692 + (TG)n Simple_repeat Simple_repeat 1 301 0 7 1617 1454 166 222 3 chr4 135340428 135340465 -20289655 - ORR1C2 LTR MaLR -323 61 3 7 1617 359 127 16 0 chr4 135340703 135340766 -20289354 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1617 321 26 0 0 chr4 135340856 135340894 -20289226 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 7 1617 365 180 11 0 chr4 135340933 135341022 -20289098 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1617 1109 74 0 13 chr4 135341187 135341337 -20288783 + B1_Mus1 SINE Alu 1 148 0 7 1617 21 0 0 0 chr4 135341337 135341358 -20288762 + AT_rich Low_complexity Low_complexity 1 21 0 7 1617 375 121 0 0 chr4 135341936 135341994 -20288126 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1617 296 250 0 0 chr4 135342012 135342072 -20288048 - B4A SINE B4 -3 289 230 7 1617 327 216 63 125 chr4 135342105 135342217 -20287903 - RSINE1 SINE B4 0 292 84 7 1617 478 249 69 75 chr4 135342503 135342708 -20287412 - B4A SINE B4 -32 192 2 7 1617 386 271 59 0 chr4 135342750 135342835 -20287285 - RSINE1 SINE B4 -31 134 45 7 1617 620 301 35 52 chr4 135342860 135343091 -20287029 - B4A SINE B4 -65 227 1 7 1617 339 335 121 5 chr4 135344880 135345105 -20285015 - MIR SINE MIR -8 260 3 7 1617 243 0 0 0 chr4 135345334 135345361 -20284759 + (GCTG)n Simple_repeat Simple_repeat 2 28 0 7 1617 995 158 22 11 chr4 135346820 135347005 -20283115 + B3 SINE B2 21 207 -9 7 1617 267 269 39 0 chr4 135347104 135347182 -20282938 + PB1D10 SINE Alu 1 81 -36 7 1617 1020 98 0 0 chr4 135347661 135347804 -20282316 + B1_Mus1 SINE Alu 6 148 0 7 1617 358 208 14 0 chr4 135347816 135347888 -20282232 + ID_B1 SINE B4 81 153 -71 7 1617 934 49 250 7 chr4 135347891 135348035 -20282085 + B2_Mm2 SINE B2 2 180 -15 7 1617 701 184 0 72 chr4 135348045 135348197 -20281923 + B1_Mur4 SINE Alu 1 141 -9 7 1617 183 186 0 0 chr4 135348198 135348241 -20281879 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1617 395 192 0 0 chr4 135348242 135348315 -20281805 + ID_B1 SINE B4 148 220 -4 7 1617 862 128 7 33 chr4 135348319 135348472 -20281648 + B1_Mur4 SINE Alu 2 150 0 7 1617 315 288 70 10 chr4 135349503 135349635 -20280485 + B1F SINE Alu 3 148 0 7 1617 681 255 102 5 chr4 135349640 135349837 -20280283 + ID_B1 SINE B4 2 217 -7 8 1617 609 219 94 0 chr4 135349859 135349987 -20280133 - B1_Mur1 SINE Alu -8 141 2 8 1617 422 219 0 0 chr4 135350004 135350077 -20280043 + ID4_ SINE ID 4 76 -7 8 1617 864 139 22 7 chr4 135350302 135350440 -20279680 + B1_Mus1 SINE Alu 2 141 -7 8 1617 624 100 9 26 chr4 135350450 135350563 -20279557 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 8 1617 238 255 8 131 chr4 135350581 135350703 -20279417 + MT2B LTR ERVL 154 260 -341 8 1617 646 259 24 20 chr4 135350604 135350781 -20279339 + ID_B1 SINE B4 87 270 -22 8 1617 306 221 0 38 chr4 135350789 135350869 -20279251 + PB1D10 SINE Alu 41 117 0 8 1617 213 121 0 0 chr4 135351283 135351316 -20278804 + (CCCCCT)n Simple_repeat Simple_repeat 3 35 0 8 1617 428 306 80 7 chr4 135351881 135352019 -20278101 + B1F1 SINE Alu 1 148 -1 8 1617 239 109 0 80 chr4 135352071 135352121 -20277999 - L2b LINE L2 -213 3162 3117 8 1617 255 61 0 0 chr4 135352396 135352429 -20277691 + (CGGGG)n Simple_repeat Simple_repeat 5 37 0 8 1617 517 274 49 69 chr4 135353561 135353808 -20276312 + HAL1-2a_MD LINE L1 2289 2530 -494 8 1617 253 273 133 26 chr4 135353847 135353960 -20276160 + MER5B DNA MER1_type 15 139 -39 8 1617 214 312 0 35 chr4 135354064 135354177 -20275943 + (CGGGG)n Simple_repeat Simple_repeat 1 109 0 8 1617 201 143 0 0 chr4 135354744 135354779 -20275341 + (C)n Simple_repeat Simple_repeat 1 35 0 8 1617 830 113 0 8 chr4 135355103 135355237 -20274883 + (GGGA)n Simple_repeat Simple_repeat 4 136 0 8 1617 538 155 18 9 chr4 135355259 135355370 -20274750 + CT-rich Low_complexity Low_complexity 2 113 0 8 1617 891 155 136 25 chr4 135355529 135355727 -20274393 + URR1B DNA MER1_type 6 225 0 8 1617 612 230 8 0 chr4 135355922 135356048 -20274072 + ID_B1 SINE B4 92 218 -6 8 1617 1024 175 80 0 chr4 135356062 135356262 -20273858 + B3 SINE B2 1 216 0 8 1617 1459 52 0 20 chr4 135356308 135356506 -20273614 + B2_Mm2 SINE B2 2 195 0 8 1617 243 320 0 82 chr4 135356507 135356592 -20273528 + RSINE1 SINE B4 85 162 -3 8 1617 288 0 0 0 chr4 135356592 135356624 -20273496 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1617 432 0 0 0 chr4 135357879 135357927 -20272193 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1617 1197 75 16 36 chr4 135357977 135358056 -20272064 - B2_Mm1t SINE B2 -4 189 116 8 1617 2302 63 119 11 chr4 135358056 135358408 -20271712 - RLTR10 LTR ERVK 0 390 1 8 1617 1197 75 16 36 chr4 135358408 135358521 -20271599 - B2_Mm1t SINE B2 -78 115 1 8 1617 191 176 0 0 chr4 135358850 135358884 -20271236 - L2c LINE L2 -228 3159 3126 8 1617 449 114 486 0 chr4 135359365 135359505 -20270615 + B3 SINE B2 1 208 -8 8 1617 756 188 20 14 chr4 135359701 135359847 -20270273 + B1_Mur3 SINE Alu 1 147 -2 8 1617 294 211 0 0 chr4 135361198 135361302 -20268818 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 1617 550 237 6 0 chr4 135361366 135361845 -20268275 + (CA)n Simple_repeat Simple_repeat 1 482 0 8 1617 382 222 25 0 chr4 135362136 135362217 -20267903 - MIR SINE MIR -115 147 65 8 1617 448 261 41 61 chr4 135362294 135362334 -20267786 + B4 SINE B4 54 90 -202 8 1617 848 112 0 0 chr4 135362334 135362459 -20267661 + B1_Mus1 SINE Alu 1 125 -23 8 1617 1164 73 0 0 chr4 135362459 135362636 -20267484 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 8 1617 2239 76 62 81 chr4 135363952 135364324 -20265796 - RLTR10B2 LTR ERVK 0 365 1 8 1617 230 164 18 0 chr4 135364534 135364589 -20265531 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 8 1617 228 35 0 0 chr4 135364879 135364908 -20265212 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 8 1617 365 257 66 9 chr4 135364927 135364950 -20265170 + B1F SINE Alu 27 138 -11 8 1617 497 181 0 0 chr4 135364950 135365033 -20265087 + ID_B1 SINE B4 131 213 -11 8 1617 275 275 117 18 chr4 135365052 135365163 -20264957 + RSINE1 SINE B4 8 129 -36 8 1617 1408 72 0 10 chr4 135365218 135365414 -20264706 - B2_Mm2 SINE B2 0 195 2 8 1617 5373 96 88 35 chr4 135365441 135366356 -20263764 - Lx4A LINE L1 0 7058 6095 8 1617 399 288 0 35 chr4 135366403 135366518 -20263602 + PB1D10 SINE Alu 2 112 -5 8 1617 469 333 43 51 chr4 135368746 135368980 -20261140 - MIR SINE MIR -22 240 9 8 1617 1350 89 0 5 chr4 135369022 135369213 -20260907 - B2_Mm2 SINE B2 -4 191 2 8 1617 895 171 71 46 chr4 135369249 135369445 -20260675 + B3 SINE B2 1 201 -15 8 1617 394 36 18 0 chr4 135369495 135369551 -20260569 - B1_Mus2 SINE Alu 0 147 91 8 1617 261 200 11 111 chr4 135369551 135369585 -20260535 - ID_B1 SINE B4 -1 223 143 8 1617 852 238 69 0 chr4 135369681 135369883 -20260237 + ID_B1 SINE B4 2 217 -7 8 1617 306 148 0 0 chr4 135369883 135369937 -20260183 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1617 395 283 131 6 chr4 135370676 135370836 -20259284 + MER20 DNA MER1_type 1 180 -39 8 1617 483 298 52 30 chr4 135371718 135371853 -20258267 - RSINE1 SINE B4 -6 159 22 8 1617 461 245 106 53 chr4 135371912 135372063 -20258057 + ID_B1 SINE B4 53 211 -13 8 1617 415 0 0 35 chr4 135372067 135372124 -20257996 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 8 1617 1052 80 0 0 chr4 135372124 135372262 -20257858 - B1_Mus2 SINE Alu -9 138 1 8 1617 319 278 82 44 chr4 135372299 135372457 -20257663 + RSINE1 SINE B4 2 165 0 8 1617 23 0 0 0 chr4 135372464 135372487 -20257633 + AT_rich Low_complexity Low_complexity 1 23 0 8 1617 1210 93 49 0 chr4 135372507 135372690 -20257430 + B2_Mm1t SINE B2 1 192 -1 8 1617 534 31 0 0 chr4 135372703 135372767 -20257353 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 8 1617 278 333 48 36 chr4 135372767 135372922 -20257198 + B4 SINE B4 17 174 -118 8 1617 281 305 12 0 chr4 135372968 135373050 -20257070 + RSINE1 SINE B4 83 165 0 8 1617 518 287 31 97 chr4 135373461 135373750 -20256370 - L1MCa LINE L1 -5568 940 671 8 1617 546 201 299 0 chr4 135373763 135373917 -20256203 - ID_B1 SINE B4 -20 204 5 8 1617 242 262 119 18 chr4 135373943 135374052 -20256068 - L1MCa LINE L1 -5872 636 517 8 1617 705 288 134 15 chr4 135374065 135374082 -20256038 - L1MCa LINE L1 -6042 466 447 8 1617 222 62 0 0 chr4 135374082 135374114 -20256006 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1617 705 288 134 15 chr4 135374114 135374438 -20255682 - L1MCa LINE L1 -6062 446 85 8 1617 1116 271 68 37 chr4 135374551 135374904 -20255216 - MTE2b LTR MaLR 0 379 16 8 1617 1175 42 0 0 chr4 135375529 135375673 -20254447 + B1_Mm SINE Alu 1 144 -3 8 1617 207 0 0 0 chr4 135375674 135375697 -20254423 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1617 341 30 0 1 chr4 135375697 135375742 -20254378 + B1_Mm SINE Alu 92 139 -11 8 1617 569 14 14 0 chr4 135375742 135375812 -20254308 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 8 1617 542 234 36 14 chr4 135376424 135376563 -20253557 + B1F SINE Alu 1 142 -7 8 1617 441 0 0 0 chr4 135376576 135376625 -20253495 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 8 1617 964 80 36 7 chr4 135376627 135376766 -20253354 - B1_Mus1 SINE Alu -4 144 2 8 1617 1084 125 129 5 chr4 135376930 135377131 -20252989 - URR1A DNA MER1_type 0 226 1 8 1617 1123 253 17 44 chr4 135377641 135377836 -20252284 - B4A SINE B4 -2 290 99 8 1617 1669 133 23 104 chr4 135377836 135378279 -20251841 + RMER17C LTR ERVK 1 407 -3 8 1617 1123 253 17 44 chr4 135378279 135378381 -20251739 - B4A SINE B4 -194 98 1 8 1617 1362 60 6 6 chr4 135378839 135379022 -20251098 - B2_Mm1t SINE B2 -9 184 2 8 1617 1134 74 0 0 chr4 135379026 135379174 -20250946 - B1_Mus1 SINE Alu 0 148 1 8 1617 703 127 29 22 chr4 135379177 135379314 -20250806 - Lx2A1 LINE L1 -1 7007 6870 8 1617 346 277 10 10 chr4 135379339 135379441 -20250679 - B3A SINE B2 0 198 97 8 1617 212 128 0 78 chr4 135379600 135379651 -20250469 - PB1D10 SINE Alu 0 117 71 8 1617 406 336 6 51 chr4 135379608 135379765 -20250355 - ID_B1 SINE B4 -7 217 68 8 1617 425 231 9 36 chr4 135379776 135379888 -20250232 - B1F1 SINE Alu -40 109 1 8 1617 21 57 0 0 chr4 135380030 135380065 -20250055 + AT_rich Low_complexity Low_complexity 1 35 0 8 1617 1104 227 140 9 chr4 135380342 135380671 -20249449 - MTEa LTR MaLR -7 372 1 8 1617 712 296 123 19 chr4 135380687 135380818 -20249302 + L1MB4 LINE L1 5655 5792 -388 8 1617 351 113 0 0 chr4 135380818 135380871 -20249249 + (CATA)n Simple_repeat Simple_repeat 2 54 0 8 1617 712 297 117 24 chr4 135380871 135381123 -20248997 + L1MB4 LINE L1 5793 6075 -109 8 1617 570 273 0 19 chr4 135381557 135381714 -20248406 + B3A SINE B2 9 162 -36 8 1617 752 250 12 0 chr4 135381733 135381901 -20248219 + B3A SINE B2 1 170 -28 8 1617 383 160 0 13 chr4 135381942 135382018 -20248102 + CT-rich Low_complexity Low_complexity 2 76 0 8 1617 675 188 0 0 chr4 135382024 135382136 -20247984 - B1_Mur2 SINE Alu -33 116 5 8 1617 1443 251 37 65 chr4 135382145 135382610 -20247510 + RCHARR1 DNA MER1_type 1 452 -522 8 1617 1112 71 0 0 chr4 135383092 135383233 -20246887 - B1_Mus2 SINE Alu -5 142 2 8 1617 380 55 0 18 chr4 135383284 135383340 -20246780 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1617 667 232 23 21 chr4 135383340 135383505 -20246615 + ID_B1 SINE B4 104 273 -19 8 1617 285 222 145 69 chr4 135383502 135383619 -20246501 + B4A SINE B4 137 270 -22 8 1617 297 0 0 0 chr4 135383619 135383652 -20246468 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1617 285 222 145 69 chr4 135383652 135383679 -20246441 + B4A SINE B4 271 292 0 8 1617 731 112 9 0 chr4 135383759 135383875 -20246245 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 8 1617 798 147 66 0 chr4 135383884 135384020 -20246100 + B1_Mus2 SINE Alu 3 147 0 8 1617 29 0 0 0 chr4 135384022 135384051 -20246069 + AT_rich Low_complexity Low_complexity 1 29 0 9 1617 1344 66 39 0 chr4 135384051 135384232 -20245888 + B2_Mm2 SINE B2 2 189 -6 9 1617 1661 195 90 8 chr4 135384905 135385292 -20244828 + MTD LTR MaLR 1 419 0 9 1617 352 319 112 0 chr4 135385298 135385486 -20244634 + L2a LINE L2 3214 3422 -4 9 1617 215 242 97 0 chr4 135385693 135385755 -20244365 + ID4 SINE ID 1 68 -15 9 1617 264 257 99 0 chr4 135385947 135386048 -20244072 + PB1 SINE Alu 12 122 -5 9 1617 872 287 113 8 chr4 135386063 135386319 -20243801 + B4 SINE B4 6 288 -4 9 1617 846 267 49 126 chr4 135386376 135386702 -20243418 + MTE2a LTR MaLR 6 306 -73 9 1617 282 176 125 115 chr4 135386853 135386872 -20243248 + MTE2a LTR MaLR 283 295 -84 9 1617 4672 92 23 0 chr4 135386872 135387535 -20242585 + RLTR33 LTR ERVK 1 678 0 9 1617 282 176 125 115 chr4 135387535 135387611 -20242509 + MTE2a LTR MaLR 296 379 0 9 1617 513 133 0 0 chr4 135387630 135387728 -20242392 + (GA)n Simple_repeat Simple_repeat 2 99 0 9 1617 297 51 0 0 chr4 135388465 135388504 -20241616 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1617 710 254 62 0 chr4 135388514 135388707 -20241413 + ID_B1 SINE B4 3 207 -17 9 1617 198 0 0 0 chr4 135388742 135388764 -20241356 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1617 532 208 246 11 chr4 135388764 135388939 -20241181 + B3 SINE B2 1 216 0 9 1617 898 143 7 52 chr4 135388948 135389103 -20241017 - B1_Mur3 SINE Alu 0 149 2 9 1617 204 266 15 59 chr4 135389137 135389205 -20240915 + MIR3 SINE MIR 92 156 -52 9 1617 293 104 3 76 chr4 135389805 135389874 -20240246 + B3A SINE B2 1 64 -131 9 1617 4473 186 76 45 chr4 135389926 135390676 -20239444 + RMER1A Other Other 1 771 -259 9 1617 1112 82 0 0 chr4 135390676 135390822 -20239298 - B1_Mus2 SINE Alu 0 147 2 9 1617 4473 186 76 45 chr4 135390822 135390912 -20239208 + RMER1A Other Other 772 864 -166 9 1617 1505 63 16 0 chr4 135390912 135391102 -20239018 - B2_Mm1a SINE B2 0 193 1 9 1617 4473 186 76 45 chr4 135391102 135391259 -20238861 + RMER1A Other Other 865 1030 0 9 1617 477 235 73 32 chr4 135391394 135391517 -20238603 - RSINE1 SINE B4 -36 129 2 9 1617 796 84 185 0 chr4 135391572 135391691 -20238429 - B1_Mus1 SINE Alu -6 142 2 9 1617 692 199 24 23 chr4 135391697 135391876 -20238244 - B3 SINE B2 -8 187 3 9 1617 332 288 0 0 chr4 135391923 135391996 -20238124 + ID_B1 SINE B4 78 150 -74 9 1617 403 240 125 0 chr4 135391934 135392030 -20238090 + PB1D7 SINE Alu 8 115 -5 9 1617 605 14 14 0 chr4 135392036 135392110 -20238010 + (GGA)n Simple_repeat Simple_repeat 1 75 0 9 1617 912 254 84 37 chr4 135392117 135392415 -20237705 + Lx8 LINE L1 6963 7274 -199 9 1617 1110 103 0 0 chr4 135392512 135392658 -20237462 + B1_Mus2 SINE Alu 2 147 0 9 1617 216 97 0 0 chr4 135392658 135392689 -20237431 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1617 1355 69 25 41 chr4 135392870 135393030 -20237090 + B2_Mm1t SINE B2 1 160 -33 9 1617 270 0 0 0 chr4 135393030 135393060 -20237060 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1617 1355 69 25 41 chr4 135393060 135393095 -20237025 + B2_Mm1t SINE B2 161 193 0 9 1617 23 0 0 0 chr4 135393111 135393134 -20236986 + AT_rich Low_complexity Low_complexity 1 23 0 9 1617 770 114 134 15 chr4 135393547 135393681 -20236439 + B1_Mur4 SINE Alu 1 150 0 9 1617 194 209 0 29 chr4 135393707 135393776 -20236344 + GA-rich Low_complexity Low_complexity 3 69 0 9 1617 208 320 45 30 chr4 135393938 135394070 -20236050 - L2 LINE L2 -2450 969 836 9 1617 183 274 81 0 chr4 135394091 135394153 -20235967 - MIRc SINE MIR -182 86 20 9 1617 183 213 0 0 chr4 135394156 135394198 -20235922 + CT-rich Low_complexity Low_complexity 6 47 0 9 1617 686 146 127 30 chr4 135394198 135394332 -20235788 - B1_Mur4 SINE Alu 0 150 4 9 1617 1253 41 0 0 chr4 135394364 135394510 -20235610 - B1_Mus2 SINE Alu 0 147 2 9 1617 277 253 12 74 chr4 135395965 135396046 -20234074 + B4A SINE B4 71 146 -146 9 1617 451 237 25 42 chr4 135395996 135396115 -20234005 + B1F SINE Alu 12 128 -21 9 1617 2700 27 42 3 chr4 135396134 135396464 -20233656 + RLTR10B2 LTR ERVK 1 343 -22 9 1617 277 127 0 83 chr4 135396488 135396548 -20233572 + B1F SINE Alu 74 128 -21 9 1617 195 42 0 0 chr4 135396748 135396772 -20233348 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 9 1617 287 250 159 21 chr4 135396784 135396912 -20233208 - B1F SINE Alu -7 142 2 9 1617 210 37 0 0 chr4 135397076 135397103 -20233017 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9 1617 312 27 0 0 chr4 135397174 135397211 -20232909 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 9 202 802 143 149 40 chr4 135397211 135397386 -20232734 - B2_Mm2 SINE B2 0 195 2 9 1618 180 111 0 0 chr4 135397551 135397578 -20232542 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1618 872 250 15 0 chr4 135397946 135398150 -20231970 - ID_B1 SINE B4 -17 207 1 9 1618 1239 48 0 0 chr4 135398781 135398928 -20231192 + B1_Mus2 SINE Alu 1 147 0 9 1618 620 246 22 0 chr4 135398960 135399094 -20231026 + B1_Mur2 SINE Alu 1 137 -12 9 1618 532 262 24 116 chr4 135399213 135399420 -20230700 + B3A SINE B2 4 191 -4 9 1618 618 14 0 0 chr4 135399457 135399528 -20230592 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 9 1618 294 360 9 9 chr4 135399538 135399650 -20230470 - B1_Mus1 SINE Alu -27 121 10 9 1618 274 89 0 35 chr4 135399674 135399732 -20230388 - B2_Mm1t SINE B2 0 193 138 9 1618 325 182 0 0 chr4 135399731 135399786 -20230334 - B2_Mm2 SINE B2 -94 101 47 9 1618 1156 99 12 0 chr4 135399810 135399972 -20230148 - B2_Mm2 SINE B2 -31 164 1 9 1618 845 224 5 72 chr4 135400051 135400272 -20229848 - ID_B1 SINE B4 -17 207 2 9 1618 285 330 0 81 chr4 135400599 135400625 -20229495 + B4 SINE B4 69 86 -206 9 1618 391 292 6 165 chr4 135400625 135400801 -20229319 + B1_Mur1 SINE Alu 2 149 0 9 1618 597 310 174 25 chr4 135400830 135401032 -20229088 + ORR1E LTR MaLR 1 238 -121 9 1618 2190 162 19 3 chr4 135401032 135401404 -20228716 + ORR1C1 LTR MaLR 1 378 0 9 1618 597 310 174 25 chr4 135401404 135401476 -20228644 + ORR1E LTR MaLR 239 316 -43 9 1618 788 206 3 3 chr4 135401744 135402044 -20228076 + (CATATA)n Simple_repeat Simple_repeat 1 300 0 9 1618 207 186 0 0 chr4 135402137 135402180 -20227940 + (CGGG)n Simple_repeat Simple_repeat 2 44 0 9 1618 242 328 0 76 chr4 135402378 135402444 -20227676 + ID4_ SINE ID 4 64 -19 9 1618 1033 196 59 0 chr4 135402490 135402694 -20227426 - B3 SINE B2 0 216 1 9 1618 577 298 5 238 chr4 135402758 135403149 -20226971 + MTEb LTR MaLR 2 308 -71 9 1618 875 187 81 53 chr4 135403149 135403358 -20226762 + B3 SINE B2 2 216 0 9 1618 577 305 3 206 chr4 135403358 135403411 -20226709 + MTEb LTR MaLR 309 342 -37 9 1618 1491 79 0 5 chr4 135403909 135404100 -20226020 - B2_Mm2 SINE B2 -4 191 2 9 1618 1308 20 0 0 chr4 135404115 135404261 -20225859 - B1_Mus2 SINE Alu 0 147 2 9 1618 555 16 0 0 chr4 135404424 135404488 -20225632 + (TC)n Simple_repeat Simple_repeat 2 65 0 9 1618 191 128 51 0 chr4 135404495 135404534 -20225586 + CT-rich Low_complexity Low_complexity 4 44 0 9 1618 609 168 113 60 chr4 135404549 135404682 -20225438 - B1_Mm SINE Alu -3 144 5 9 1618 408 172 0 0 chr4 135404686 135404773 -20225347 + CT-rich Low_complexity Low_complexity 3 89 0 9 1618 494 167 112 60 chr4 135404775 135404909 -20225211 - B1_Mur1 SINE Alu -6 143 3 9 1618 713 262 7 22 chr4 135405095 135405263 -20224857 + ID_B1 SINE B4 67 223 -69 9 1618 447 306 34 89 chr4 135405285 135405507 -20224613 + B3A SINE B2 8 216 0 9 1618 251 345 91 39 chr4 135405408 135405562 -20224558 - RMER12 LTR ERVK -440 882 721 9 1618 1333 40 107 6 chr4 135405562 135405739 -20224381 - B2_Mm2 SINE B2 0 195 1 9 1618 632 187 0 0 chr4 135405756 135405863 -20224257 + PB1D9 SINE Alu 5 111 -9 9 1618 1029 238 156 19 chr4 135406011 135406319 -20223801 + MTD LTR MaLR 53 402 -17 9 1618 366 23 0 0 chr4 135407002 135407045 -20223075 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1618 410 71 0 28 chr4 135407047 135407119 -20223001 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 9 1618 482 141 124 57 chr4 135407130 135407235 -20222885 - B1_Mur1 SINE Alu -24 125 14 9 1618 303 305 0 62 chr4 135407254 135407366 -20222754 - PB1D10 SINE Alu -12 105 1 9 1618 642 289 0 26 chr4 135407423 135407579 -20222541 + ID_B1 SINE B4 73 224 0 9 1618 728 184 37 0 chr4 135407608 135407744 -20222376 + B1_Mus1 SINE Alu 1 141 -7 9 1618 363 268 10 10 chr4 135407875 135407973 -20222147 + ID_B1 SINE B4 124 221 -3 9 1618 398 314 28 7 chr4 135408230 135408371 -20221749 + RSINE1 SINE B4 3 146 -19 9 1618 995 97 0 52 chr4 135408447 135408600 -20221520 + B1_Mus1 SINE Alu 2 146 -2 9 1618 1223 54 0 0 chr4 135408655 135408802 -20221318 + B1_Mus2 SINE Alu 1 147 0 9 1618 213 279 0 0 chr4 135408808 135408869 -20221251 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 9 1618 467 255 33 7 chr4 135408945 135409104 -20221016 + L1_Rod LINE L1 5279 5492 -691 9 1618 582 197 77 0 chr4 135409112 135409229 -20220891 + B1_Mur1 SINE Alu 3 128 -21 9 1618 467 157 226 0 chr4 135409243 135409345 -20220775 + B1_Mur1 SINE Alu 3 127 -22 9 1618 802 181 0 20 chr4 135409442 135409594 -20220526 - B1_Mur3 SINE Alu 0 149 1 9 1618 881 186 45 23 chr4 135410283 135410459 -20219661 - B3A SINE B2 -16 182 3 9 1618 1179 50 0 0 chr4 135410867 135411007 -20219113 + B1_Mus1 SINE Alu 2 141 -7 9 1618 207 125 0 0 chr4 135411008 135411048 -20219072 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 9 1618 279 230 26 26 chr4 135411150 135411226 -20218894 + GA-rich Low_complexity Low_complexity 1 76 0 1 1618 31 58 0 0 chr4 135412243 135412295 -20217825 + GC_rich Low_complexity Low_complexity 1 52 0 1 1618 297 203 22 14 chr4 135412564 135412654 -20217466 + PB1D7 SINE Alu 2 99 -21 1 1618 632 156 114 8 chr4 135413452 135413575 -20216545 - B1_Mus1 SINE Alu -2 146 11 1 1618 862 70 39 0 chr4 135413647 135413775 -20216345 - B1_Mus1 SINE Alu 0 148 16 1 1618 312 261 65 0 chr4 135413788 135413880 -20216240 - PB1D9 SINE Alu 0 120 23 1 1618 523 193 136 48 chr4 135413931 135414056 -20216064 - B1_Mus2 SINE Alu -1 146 11 1 1618 22 35 0 0 chr4 135414538 135414567 -20215553 + AT_rich Low_complexity Low_complexity 1 29 0 1 1618 26 0 0 0 chr4 135415140 135415166 -20214954 + AT_rich Low_complexity Low_complexity 1 26 0 1 1618 219 254 0 83 chr4 135418060 135418120 -20212000 + MIRb SINE MIR 32 86 -182 1 1618 519 97 290 0 chr4 135418386 135418479 -20211641 - PB1D9 SINE Alu 0 120 1 1 1618 367 278 93 12 chr4 135418656 135418832 -20211288 + B3 SINE B2 2 191 -4 1 1618 258 32 0 0 chr4 135418846 135418877 -20211243 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1618 387 326 10 12 chr4 135419156 135419277 -20210843 + AluG_3 SINE Alu 1 221 -90 1 1618 352 224 207 0 chr4 135422222 135422338 -20207782 - MIR SINE MIR -13 249 110 1 1618 198 103 0 0 chr4 135422767 135422796 -20207324 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1618 527 303 49 77 chr4 135422872 135423158 -20206962 + CR1_Mam LINE CR1 1705 1982 -222 1 1618 189 294 16 5 chr4 135423721 135423778 -20206342 - L2a LINE L2 -9 3417 3308 1 1618 208 139 0 0 chr4 135424515 135424551 -20205569 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1618 185 200 30 91 chr4 135424836 135424902 -20205218 + L3 LINE CR1 960 1021 -3468 1 1618 368 89 18 0 chr4 135426113 135426169 -20203951 + HAL1-3A_ME LINE L1 1971 2027 -831 1 1618 555 29 0 0 chr4 135426169 135426238 -20203882 + (CCCA)n Simple_repeat Simple_repeat 3 71 0 1 1618 333 0 0 0 chr4 135426279 135426316 -20203804 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1618 306 263 106 0 chr4 135428621 135428719 -20201401 - B1F SINE Alu -34 115 9 1 1618 253 238 6 19 chr4 135430500 135430559 -20199561 + PB1D10 SINE Alu 60 120 0 1 1618 267 256 156 0 chr4 135431148 135431238 -20198882 - B3 SINE B2 -17 199 96 1 1618 1163 60 118 12 chr4 135431557 135431726 -20198394 + B2_Mm1a SINE B2 2 188 -5 1 1618 236 280 0 0 chr4 135431852 135431902 -20198218 + B4A SINE B4 181 230 -62 1 1618 348 209 102 28 chr4 135431902 135432010 -20198110 + PB1D9 SINE Alu 5 120 0 1 1618 468 213 54 81 chr4 135432024 135432172 -20197948 + RSINE1 SINE B4 5 148 -17 1 1618 471 256 70 0 chr4 135433062 135433191 -20196929 - ID_B1 SINE B4 -3 221 84 1 1618 1383 206 16 73 chr4 135433418 135433530 -20196590 + MTD LTR MaLR 6 117 -302 1 1618 288 0 0 0 chr4 135433530 135433562 -20196558 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1618 1111 66 0 0 chr4 135433562 135433699 -20196421 - B1_Mm SINE Alu -9 138 2 1 1618 1293 92 32 5 chr4 135433700 135433886 -20196234 - B2_Mm2 SINE B2 -4 191 1 1 1618 1383 206 16 73 chr4 135433886 135434073 -20196047 + MTD LTR MaLR 118 290 -129 1 1618 208 49 73 0 chr4 135434087 135434128 -20195992 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 1 1618 1269 27 7 0 chr4 135434133 135434279 -20195841 - B1_Mus2 SINE Alu 0 147 1 1 1618 675 282 46 36 chr4 135434362 135434557 -20195563 + B4A SINE B4 1 197 -95 1 1618 1106 89 0 7 chr4 135434713 135434860 -20195260 + B1_Mus2 SINE Alu 2 147 0 1 1618 243 0 0 0 chr4 135434860 135434887 -20195233 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1618 24 0 0 0 chr4 135434891 135434915 -20195205 + AT_rich Low_complexity Low_complexity 1 24 0 1 1618 2330 108 106 60 chr4 135435427 135435881 -20194239 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1618 285 246 14 28 chr4 135435958 135436029 -20194091 + ID4_ SINE ID 2 71 -12 1 1618 560 155 67 10 chr4 135436076 135436180 -20193940 - B1_Mur3 SINE Alu -29 120 11 1 1618 1237 84 65 27 chr4 135436181 135436365 -20193755 + RMER1B Other Other 580 770 -296 1 1618 447 179 53 0 chr4 135436363 135436458 -20193662 + RMER1B Other Other 945 1044 -22 1 1618 180 0 0 0 chr4 135436465 135436485 -20193635 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1 1618 301 189 41 69 chr4 135436820 135436932 -20193188 - B1F2 SINE Alu 0 149 44 1 1618 284 70 23 0 chr4 135437127 135437170 -20192950 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1618 1114 83 7 0 chr4 135437186 135437331 -20192789 + B1_Mus2 SINE Alu 2 147 0 1 1618 1371 56 16 38 chr4 135437333 135437518 -20192602 - B2_Mm2 SINE B2 -14 181 1 1 1618 930 291 115 28 chr4 135437778 135438203 -20191917 - RMER5 LTR ERV1 0 534 73 1 1618 389 265 51 0 chr4 135438237 135438335 -20191785 - B1F SINE Alu -16 133 31 1 1618 321 302 116 0 chr4 135438391 135438477 -20191643 + PB1D10 SINE Alu 3 98 -19 1 1618 400 304 88 0 chr4 135438473 135438598 -20191522 + ID_B1 SINE B4 82 217 -7 1 1618 267 284 154 33 chr4 135438638 135438729 -20191391 + ID_B1 SINE B4 23 124 -100 1 1618 723 173 101 0 chr4 135438749 135438888 -20191232 + RSINE1 SINE B4 13 165 0 1 1618 210 150 0 0 chr4 135438996 135439036 -20191084 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1618 450 214 36 170 chr4 135439901 135440154 -20189966 - RMER10A LTR ERVL -222 220 2 1 1618 1943 159 19 54 chr4 135440493 135440895 -20189225 + MTB_Mm LTR MaLR 1 386 -33 1 1618 290 26 0 25 chr4 135440895 135440935 -20189185 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1618 1116 95 0 13 chr4 135440940 135441089 -20189031 - B1_Mus2 SINE Alu 0 147 1 1 1618 1557 204 43 111 chr4 135441089 135441121 -20188999 + MTB_Mm LTR MaLR 387 411 -8 1 1618 326 274 0 89 chr4 135441155 135441267 -20188853 + B3A SINE B2 71 172 -26 1 1618 251 253 103 62 chr4 135441984 135442081 -20188039 - PB1D9 SINE Alu -18 102 2 1 1618 254 73 0 24 chr4 135442094 135442136 -20187984 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1618 228 305 109 8 chr4 135442469 135442588 -20187532 + B1F SINE Alu 1 131 -18 1 1618 210 315 42 85 chr4 135442808 135442926 -20187194 + PB1 SINE Alu 13 125 -2 1 1618 403 206 188 45 chr4 135442942 135443054 -20187066 + RSINE1 SINE B4 3 130 -35 1 1618 3125 40 0 3 chr4 135443130 135443504 -20186616 + L1Md_F2 LINE L1 6197 6569 -13 1 1618 1158 56 21 0 chr4 135443551 135443693 -20186427 + B1_Mus2 SINE Alu 3 147 0 1 1618 1170 110 11 28 chr4 135443787 135443965 -20186155 + B2_Mm2 SINE B2 2 176 -19 1 1618 219 69 0 0 chr4 135444130 135444159 -20185961 + (AGGGGG)n Simple_repeat Simple_repeat 6 34 0 1 1618 410 222 44 11 chr4 135444181 135444272 -20185848 + B1_Mm SINE Alu 11 104 -43 1 1618 420 291 82 7 chr4 135444747 135444882 -20185238 - B1_Mm SINE Alu -1 146 2 1 1618 366 287 214 19 chr4 135445064 135445270 -20184850 - MER31B LTR ERV1 -74 392 147 1 1618 948 90 7 65 chr4 135445320 135445475 -20184645 - B1_Mur3 SINE Alu -2 147 2 1 1618 256 209 103 15 chr4 135445716 135445784 -20184336 - MER31B LTR ERV1 -380 86 13 1 1618 256 274 0 46 chr4 135445890 135445955 -20184165 - RSINE1 SINE B4 -21 144 83 1 1618 569 133 10 0 chr4 135446191 135446289 -20183831 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1618 936 146 6 11 chr4 135446285 135446465 -20183655 + CT-rich Low_complexity Low_complexity 2 180 0 1 1618 1332 91 16 0 chr4 135446517 135446703 -20183417 + B2_Mm1a SINE B2 2 190 -3 1 1618 1107 64 0 0 chr4 135446788 135446928 -20183192 + B1_Mm SINE Alu 8 147 0 1 1618 211 327 87 0 chr4 135447482 135447586 -20182534 + MER5A DNA MER1_type 70 182 -7 1 1618 266 224 34 17 chr4 135447599 135447658 -20182462 - MIR3 SINE MIR -54 154 95 1 1618 715 215 8 0 chr4 135447698 135447828 -20182292 + B3 SINE B2 1 131 -85 1 1618 3450 32 2 5 chr4 135447805 135448234 -20181886 - MT-int LTR MaLR -664 1299 595 1 1618 932 148 209 6 chr4 135448261 135448438 -20181682 + B3 SINE B2 3 215 -1 1 1618 304 232 29 0 chr4 135449004 135449073 -20181047 - MER20 DNA MER1_type -85 134 64 1 1618 225 0 0 0 chr4 135449074 135449099 -20181021 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1618 345 217 0 14 chr4 135449193 135449263 -20180857 - ID4_ SINE ID -13 70 2 1 1618 1375 97 38 0 chr4 135449300 135449486 -20180634 - B2_Mm2 SINE B2 -1 194 2 1 1618 1158 75 14 0 chr4 135449713 135449859 -20180261 + B1_Mus1 SINE Alu 1 148 0 1 1618 813 167 0 0 chr4 135449861 135450011 -20180109 + GA-rich Low_complexity Low_complexity 3 152 0 1 1618 306 229 0 57 chr4 135450020 135450108 -20180012 + B4 SINE B4 5 87 -205 1 1618 1166 185 5 0 chr4 135450107 135450302 -20179818 + B3 SINE B2 7 202 -14 1 1618 281 296 0 0 chr4 135450312 135450383 -20179737 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1618 350 277 164 70 chr4 135450399 135450570 -20179550 + B4A SINE B4 88 274 -18 1 1618 453 178 0 0 chr4 135450628 135450701 -20179419 - ORR1B1 LTR MaLR 0 394 322 1 1618 351 205 88 25 chr4 135450723 135450803 -20179317 + MTD LTR MaLR 268 352 -67 1 1618 780 150 112 8 chr4 135450833 135450967 -20179153 - B1_Mur2 SINE Alu -1 148 1 1 1618 234 299 105 59 chr4 135451091 135451244 -20178876 - MIRm SINE MIR -103 173 14 1 1618 268 308 49 38 chr4 135451778 135451948 -20178172 - RMER15 LTR ERVL -43 532 335 1 1618 1178 75 0 0 chr4 135452501 135452648 -20177472 - B1_Mus2 SINE Alu 0 147 1 1 1618 249 312 69 50 chr4 135452792 135452893 -20177227 + MIR SINE MIR 34 136 -72 1 1618 808 241 92 33 chr4 135453385 135453656 -20176464 - B4A SINE B4 -4 288 2 1 1618 1118 73 0 0 chr4 135453924 135454060 -20176060 + B1_Mus1 SINE Alu 2 137 -11 1 1618 396 0 0 0 chr4 135454060 135454104 -20176016 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1618 260 356 68 0 chr4 135454244 135454376 -20175744 - MamGypLTR1a LTR Gypsy -557 227 87 1 1618 209 215 76 101 chr4 135454401 135454520 -20175600 - MIRm SINE MIR -128 148 30 1 1618 1644 37 0 0 chr4 135454875 135455066 -20175054 - B2_Mm1a SINE B2 -1 192 2 1 1618 2589 83 3 3 chr4 135455479 135455806 -20174314 + ORR1A2 LTR MaLR 1 327 0 1 1618 261 319 132 9 chr4 135456607 135456662 -20173458 - ID_B1 SINE B4 -3 221 163 1 1618 1197 62 7 0 chr4 135456662 135456807 -20173313 + B1_Mus2 SINE Alu 2 147 0 1 1618 261 319 132 9 chr4 135456807 135456865 -20173255 - ID_B1 SINE B4 -62 162 95 1 1618 1212 104 40 0 chr4 135456912 135457085 -20173035 + B2_Mm2 SINE B2 2 181 -14 1 1618 354 78 316 9 chr4 135457132 135457246 -20172874 + B2_Mm2 SINE B2 47 195 0 1 1618 223 270 16 16 chr4 135457285 135457349 -20172771 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1618 538 254 36 22 chr4 135457399 135457536 -20172584 - B1F SINE Alu -9 140 2 1 1618 314 0 0 47 chr4 135457685 135457728 -20172392 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1618 1171 46 66 0 chr4 135457728 135457879 -20172241 - B2_Mm2 SINE B2 -33 162 2 1 1618 826 221 54 39 chr4 135457886 135458089 -20172031 - B3 SINE B2 -6 210 5 1 1618 424 287 45 37 chr4 135458142 135458276 -20171844 - B3A SINE B2 -26 172 38 1 1618 795 127 34 0 chr4 135458373 135458491 -20171629 + B1_Mur4 SINE Alu 14 135 -15 1 1618 251 312 21 11 chr4 135458672 135458766 -20171354 - Charlie21a DNA MER1_type -51 1162 1068 1 1618 526 233 58 43 chr4 135458774 135458913 -20171207 - B1_Mur1 SINE Alu -7 142 2 1 1618 350 248 28 0 chr4 135458990 135459072 -20171048 + ID4 SINE ID 3 87 -65 1 1618 360 0 0 0 chr4 135459073 135459113 -20171007 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1618 398 302 67 0 chr4 135459198 135459317 -20170803 + B3A SINE B2 1 127 -71 1 1618 417 54 0 0 chr4 135459318 135459374 -20170746 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1618 626 94 177 0 chr4 135459409 135459505 -20170615 + B1_Mus2 SINE Alu 1 113 -34 1 1618 291 54 0 0 chr4 135459513 135459550 -20170570 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 1 1618 249 259 35 0 chr4 135459557 135459615 -20170505 - B1F SINE Alu -61 88 29 1 1618 213 153 62 92 chr4 135460442 135460507 -20169613 - B1F1 SINE Alu -2 147 85 1 1618 290 182 119 83 chr4 135460570 135460654 -20169466 + PB1D10 SINE Alu 31 117 0 1 1618 240 275 109 34 chr4 135460589 135460736 -20169384 + ORR1B1-int LTR MaLR 541 698 -811 1 1618 244 261 10 120 chr4 135460670 135460686 -20169434 + MT2B LTR ERVL 152 156 -445 1 1618 526 206 49 0 chr4 135460686 135460788 -20169332 + B1_Mur1 SINE Alu 2 108 -41 1 1618 411 265 91 49 chr4 135460788 135460829 -20169291 + B4A SINE B4 87 235 -57 1 1618 348 266 0 12 chr4 135460832 135460912 -20169208 + ID4_ SINE ID 5 83 0 1 1618 338 301 109 14 chr4 135461121 135461193 -20168927 + B3A SINE B2 3 74 -124 1 1618 189 0 0 0 chr4 135461193 135461214 -20168906 + (CTG)n Simple_repeat Simple_repeat 1 21 0 1 1618 338 301 109 14 chr4 135461214 135461279 -20168841 + B3A SINE B2 75 152 -46 1 1618 1233 106 0 0 chr4 135461745 135461915 -20168205 + B2_Mm2 SINE B2 2 171 -24 1 1618 306 303 50 50 chr4 135461940 135461996 -20168124 + B4A SINE B4 35 90 -202 1 1618 820 158 13 33 chr4 135461996 135462147 -20167973 + B1_Mur3 SINE Alu 1 148 -1 1 1618 2790 138 72 15 chr4 135462267 135462738 -20167382 - RLTR19 LTR ERVK 0 499 2 1 1618 755 241 146 5 chr4 135462959 135463060 -20167060 - ID_B1 SINE B4 -1 223 104 1 1618 423 0 0 0 chr4 135463060 135463107 -20167013 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1618 755 241 146 5 chr4 135463107 135463197 -20166923 - ID_B1 SINE B4 -121 103 5 1 1618 1592 27 38 0 chr4 135463258 135463443 -20166677 - B2_Mm1t SINE B2 0 193 2 1 1618 722 240 93 10 chr4 135463463 135463657 -20166463 - B3 SINE B2 -6 210 1 1 1618 705 274 18 12 chr4 135463747 135463917 -20166203 - B3 SINE B2 -1 215 45 1 1618 540 274 67 20 chr4 135463902 135464051 -20166069 + ID_B1 SINE B4 54 209 -15 1 1618 200 350 15 18 chr4 135464174 135464277 -20165843 + MIR SINE MIR 96 203 -65 1 1618 903 115 63 28 chr4 135464277 135464420 -20165700 + B1_Mur3 SINE Alu 1 148 -1 1 1618 180 374 15 54 chr4 135464420 135464446 -20165674 + MIRb SINE MIR 204 227 -41 1 1618 244 250 0 0 chr4 135464870 135464918 -20165202 + ZP3AR Satellite Satellite 38 85 -127 1 1618 259 182 0 0 chr4 135464876 135464920 -20165200 + ID4 SINE ID 2 45 -38 1 1618 25 51 0 0 chr4 135464920 135464959 -20165161 + AT_rich Low_complexity Low_complexity 1 39 0 1 1618 21 36 0 0 chr4 135464986 135465014 -20165106 + AT_rich Low_complexity Low_complexity 1 28 0 1 1618 464 48 0 16 chr4 135465029 135465093 -20165027 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1618 355 190 24 60 chr4 135465264 135465348 -20164772 + ID SINE ID 3 83 -141 1 1618 225 149 0 60 chr4 135465819 135465869 -20164251 + B1F1 SINE Alu 95 141 -8 1 1618 1464 186 30 13 chr4 135466037 135466373 -20163747 - RLTR33 LTR ERVK -80 598 173 1 1618 279 333 0 0 chr4 135466389 135466473 -20163647 + ID_B1 SINE B4 134 217 -7 1 1618 269 250 0 15 chr4 135466474 135466539 -20163581 + RSINE1 SINE B4 11 74 -91 1 1618 26 30 0 0 chr4 135466595 135466628 -20163492 + AT_rich Low_complexity Low_complexity 1 33 0 1 1618 342 0 0 0 chr4 135466675 135466713 -20163407 + (TTAG)n Simple_repeat Simple_repeat 2 39 0 1 1618 822 167 6 77 chr4 135466738 135466894 -20163226 + B1_Mus2 SINE Alu 1 145 -2 1 1618 618 14 0 0 chr4 135466894 135466965 -20163155 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1618 877 211 112 10 chr4 135466985 135467181 -20162939 - B3 SINE B2 0 216 1 1 1618 270 0 0 0 chr4 135467190 135467220 -20162900 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1618 763 200 44 0 chr4 135467232 135467367 -20162753 - B1_Mur1 SINE Alu -8 141 1 1 1618 200 248 333 0 chr4 135467474 135467562 -20162558 - MIR SINE MIR -103 165 52 1 1618 210 37 0 0 chr4 135467867 135467894 -20162226 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 1 1618 551 209 29 212 chr4 135467894 135468064 -20162056 - B1F SINE Alu -9 140 2 1 1618 65 25 0 0 chr4 135468079 135468158 -20161962 + AT_rich Low_complexity Low_complexity 1 79 0 1 1618 636 262 139 23 chr4 135468190 135468448 -20161672 - B4A SINE B4 -2 290 3 1 1618 533 271 57 19 chr4 135468565 135468723 -20161397 - RSINE1 SINE B4 0 165 2 1 1618 525 80 0 0 chr4 135469124 135469199 -20160921 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1618 315 222 49 24 chr4 135469235 135469315 -20160805 + ID4 SINE ID 18 101 -51 1 1618 465 202 152 9 chr4 135469315 135469420 -20160700 + PB1D9 SINE Alu 1 120 0 1 1618 232 255 52 52 chr4 135469420 135469455 -20160665 + BC1_Mm scRNA scRNA 102 133 -19 1 1618 228 296 29 67 chr4 135469679 135469784 -20160336 - PB1D10 SINE Alu -7 110 10 1 1618 755 142 26 30 chr4 135469833 135469965 -20160155 + B1_Mus1 SINE Alu 20 148 0 1 1618 619 184 184 0 chr4 135469970 135470095 -20160025 + B1_Mus1 SINE Alu 1 148 0 1 1618 388 0 39 0 chr4 135470129 135470181 -20159939 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1618 352 247 198 0 chr4 135470190 135470271 -20159849 - RSINE1 SINE B4 -22 143 47 1 1618 1196 41 0 13 chr4 135470282 135470431 -20159689 + B1_Mm SINE Alu 1 147 0 1 1618 243 88 0 0 chr4 135470490 135470524 -20159596 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 1 1618 798 132 15 8 chr4 135470526 135470656 -20159464 - B1_Mur3 SINE Alu -17 132 2 1 1618 423 213 28 124 chr4 135470656 135470697 -20159423 - MT2B LTR ERVL -448 153 127 1 1618 629 170 0 9 chr4 135471129 135471236 -20158884 - PB1D9 SINE Alu -9 111 6 1 1618 287 269 0 69 chr4 135471373 135471445 -20158675 + PB1 SINE Alu 1 67 -60 1 1618 219 69 0 0 chr4 135471636 135471665 -20158455 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1618 265 254 59 15 chr4 135471760 135471828 -20158292 - MamGypLTR1d LTR Gypsy -609 204 134 1 1618 1200 77 64 18 chr4 135471896 135472067 -20158053 + B2_Mm1t SINE B2 1 179 -14 1 1618 211 115 286 32 chr4 135472067 135472130 -20157990 + ID4_ SINE ID 2 80 -3 1 1618 433 84 9 0 chr4 135472094 135472158 -20157962 + B2_Mm2 SINE B2 47 114 -102 1 1618 23 54 0 0 chr4 135472165 135472202 -20157918 + AT_rich Low_complexity Low_complexity 1 37 0 1 1618 1119 95 0 7 chr4 135472208 135472356 -20157764 + B1_Mus1 SINE Alu 2 148 0 1 1618 26 0 0 0 chr4 135472356 135472382 -20157738 + AT_rich Low_complexity Low_complexity 1 26 0 1 1618 264 308 64 99 chr4 135475126 135475328 -20154792 + MIR3 SINE MIR 5 199 -9 1 1618 804 267 32 46 chr4 135475686 135475902 -20154218 + ID_B1 SINE B4 8 220 -4 1 1618 1453 70 0 26 chr4 135475938 135476130 -20153990 + B2_Mm2 SINE B2 2 188 -7 1 1618 225 0 0 0 chr4 135476719 135476744 -20153376 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1 1618 217 0 61 0 chr4 135477203 135477236 -20152884 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1618 1456 72 0 44 chr4 135478315 135478519 -20151601 + B2_Mm2 SINE B2 1 195 0 1 1618 394 294 88 0 chr4 135479515 135479651 -20150469 + B1F SINE Alu 1 148 -1 1 1618 468 282 0 0 chr4 135479542 135479645 -20150475 + ID_B1 SINE B4 115 217 -7 1 1618 284 238 53 69 chr4 135479645 135479673 -20150447 - YREP_Mm Unknown Unknown -1529 283 155 1 1618 229 254 42 14 chr4 135479769 135479841 -20150279 - ORR1E LTR MaLR 0 379 306 1 1618 413 301 7 14 chr4 135479947 135480085 -20150035 - ORR1E LTR MaLR -222 137 1 1 1618 252 324 73 68 chr4 135480085 135480167 -20149953 + Cheshire DNA MER1_type 23 100 -2320 1 1618 1200 48 0 27 chr4 135480167 135480316 -20149804 + B1_Mus2 SINE Alu 3 147 0 1 1618 252 324 73 68 chr4 135480316 135480440 -20149680 + Cheshire DNA MER1_type 101 230 -2190 1 1618 488 303 14 0 chr4 135480586 135480731 -20149389 - B1F2 SINE Alu -1 148 2 1 1618 291 28 0 0 chr4 135480796 135480832 -20149288 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1618 443 270 85 12 chr4 135480900 135481065 -20149055 - L1MA5 LINE L1 -12 6288 6112 1 1618 573 247 31 80 chr4 135481087 135481124 -20148996 + ID_B1 SINE B4 63 217 -7 1 1618 766 159 63 0 chr4 135481124 135481250 -20148870 + B1_Mur1 SINE Alu 9 142 -7 1 1618 24 0 0 0 chr4 135481260 135481284 -20148836 + AT_rich Low_complexity Low_complexity 1 24 0 1 1618 430 274 0 0 chr4 135481284 135481379 -20148741 - ID_B1 SINE B4 -17 207 113 1 1618 1473 223 70 37 chr4 135481927 135482482 -20147638 - RLTR16 LTR ERVK -2 566 6 1 1618 401 261 210 0 chr4 135482550 135482669 -20147451 - RSINE1 SINE B4 -19 146 3 1 1618 2239 126 29 35 chr4 135482754 135483131 -20146989 - RLTR9A2 LTR ERVK -7 376 2 1 1618 583 227 0 26 chr4 135483192 135483305 -20146815 - B1_Mus2 SINE Alu -1 146 37 1 1618 1039 38 8 0 chr4 135483290 135483422 -20146698 - B1_Mus2 SINE Alu 0 147 15 1 1618 238 291 76 0 chr4 135483422 135483522 -20146598 - B1F SINE Alu -2 115 1 1 1618 350 189 167 0 chr4 135483544 135483634 -20146486 - PB1D10 SINE Alu -1 116 12 1 1618 291 355 0 21 chr4 135483810 135483905 -20146215 - B1F1 SINE Alu -56 93 1 1 1618 1341 79 15 35 chr4 135483959 135484156 -20145964 - B2_Mm1t SINE B2 0 193 1 1 1618 214 237 117 13 chr4 135484288 135484365 -20145755 - BC1_Mm scRNA scRNA -54 98 14 1 1618 516 247 30 72 chr4 135484384 135484550 -20145570 - RSINE1 SINE B4 -4 161 3 1 1618 384 258 80 91 chr4 135484561 135484736 -20145384 - B3 SINE B2 -6 189 17 1 1618 261 119 0 0 chr4 135484846 135484888 -20145232 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1618 635 191 153 7 chr4 135484908 135485045 -20145075 - RSINE1 SINE B4 -7 158 2 1 1618 1198 48 0 7 chr4 135485122 135485268 -20144852 - B1_Mus2 SINE Alu -1 146 2 1 1618 841 226 14 58 chr4 135485278 135485485 -20144635 - B3 SINE B2 -7 209 12 1 1618 266 314 0 0 chr4 135485652 135485722 -20144398 - ID4 SINE ID -12 71 2 1 1618 246 278 14 50 chr4 135486015 135486120 -20144000 - ID_B1 SINE B4 -116 176 74 1 1618 323 0 0 45 chr4 135486120 135486164 -20143956 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1618 1171 89 6 0 chr4 135486164 135486322 -20143798 - B2_Mm1a SINE B2 -33 160 2 1 1618 978 129 21 0 chr4 135486520 135486660 -20143460 + B1_Mur4 SINE Alu 2 144 -6 1 1618 224 244 86 37 chr4 135486684 135486763 -20143357 + ID SINE ID 4 86 -138 1 1618 1010 62 110 7 chr4 135486763 135486908 -20143212 + B2_Mm2 SINE B2 1 160 -35 1 1618 441 0 0 0 chr4 135486912 135486961 -20143159 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1618 844 175 21 14 chr4 135487391 135487536 -20142584 + B1_Mur1 SINE Alu 3 148 -1 1 1618 731 176 8 0 chr4 135487542 135487667 -20142453 + B1_Mur3 SINE Alu 1 126 -23 1 1618 267 326 0 123 chr4 135487544 135487698 -20142422 + MT2B LTR ERVL 167 301 -300 1 1618 24 0 0 0 chr4 135487812 135487836 -20142284 + AT_rich Low_complexity Low_complexity 1 24 0 1 1618 474 197 255 25 chr4 135487844 135488005 -20142115 + B3 SINE B2 2 199 -17 1 1618 375 319 79 55 chr4 135488011 135488213 -20141907 - B3 SINE B2 0 216 10 1 1618 237 246 169 0 chr4 135488155 135488220 -20141900 - B4A SINE B4 -214 78 3 1 1618 318 106 0 0 chr4 135488398 135488445 -20141675 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1618 633 154 0 0 chr4 135488445 135488536 -20141584 - B3 SINE B2 -124 92 2 1 1618 355 278 104 8 chr4 135488545 135488679 -20141441 - MER20 DNA MER1_type -47 172 26 1 1618 1853 150 19 28 chr4 135489114 135489468 -20140652 - ORR1A3 LTR MaLR -14 356 29 1 1618 545 246 39 8 chr4 135489496 135489623 -20140497 - RSINE1 SINE B4 -17 148 18 1 1618 257 255 80 42 chr4 135489814 135489920 -20140200 - B4 SINE B4 -194 98 1 1 1618 495 267 65 16 chr4 135490246 135490397 -20139723 - ID_B1 SINE B4 -69 223 69 1 1618 182 105 26 0 chr4 135490903 135490941 -20139179 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1618 317 311 91 43 chr4 135491306 135491538 -20138582 - RLTR42-int LTR ERVK -4127 1395 1153 1 1618 242 313 82 11 chr4 135491724 135491846 -20138274 + MIR SINE MIR 98 231 -37 1 1618 426 279 0 0 chr4 135492101 135492212 -20137908 - PB1 SINE Alu -15 112 2 1 1618 1187 81 0 0 chr4 135492233 135492381 -20137739 - B1_Mus1 SINE Alu 0 148 1 1 1618 287 233 11 85 chr4 135492383 135492477 -20137643 - PB1D9 SINE Alu -2 118 32 1 1618 318 190 141 12 chr4 135492962 135493047 -20137073 - RMER12 LTR ERVK 0 1322 1227 1 1618 1461 259 54 80 chr4 135493137 135493950 -20136170 - RMER12 LTR ERVK -1069 779 6 1 1618 419 177 38 12 chr4 135493993 135494073 -20136047 - ID4_ SINE ID 0 83 2 1 1618 233 280 61 48 chr4 135494073 135494133 -20135987 - B1F1 SINE Alu -2 115 52 1 1618 2543 133 132 13 chr4 135494133 135494357 -20135763 - RLTR11A2 LTR ERVK 0 527 283 1 1618 1223 90 67 11 chr4 135494357 135494537 -20135583 - B2_Mm2 SINE B2 -5 190 1 1 1618 2543 133 132 13 chr4 135494537 135494783 -20135337 - RLTR11A2 LTR ERVK -245 282 1 1 1618 233 264 66 53 chr4 135494783 135494812 -20135308 - B1F1 SINE Alu -93 56 25 1 1618 556 260 47 0 chr4 135495933 135496060 -20134060 - ETnERV2-int LTR ERVK -204 7202 7070 1 1618 252 0 0 0 chr4 135496100 135496128 -20133992 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1618 42 0 0 0 chr4 135496240 135496282 -20133838 + AT_rich Low_complexity Low_complexity 1 42 0 1 1618 507 268 168 0 chr4 135496299 135496478 -20133642 + ID_B1 SINE B4 2 210 -14 1 1618 655 159 86 34 chr4 135496632 135496749 -20133371 - B3 SINE B2 -85 131 9 1 1618 240 303 77 26 chr4 135496682 135496760 -20133360 - RSINE1 SINE B4 -83 82 1 1 1618 1094 109 0 20 chr4 135496863 135497013 -20133107 - B1_Mus1 SINE Alu 0 148 2 1 1618 407 238 317 24 chr4 135497060 135497224 -20132896 + B3 SINE B2 3 214 -2 1 1618 1191 89 0 0 chr4 135497245 135497391 -20132729 + B1_Mus2 SINE Alu 2 147 0 1 1618 1240 55 0 0 chr4 135497394 135497539 -20132581 + B1_Mm SINE Alu 1 145 -2 1 1618 302 0 26 0 chr4 135497545 135497583 -20132537 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1618 418 313 109 88 chr4 135497608 135497731 -20132389 - L1MB8 LINE L1 -60 6118 5986 1 1618 1165 143 72 54 chr4 135497731 135497952 -20132168 - URR1B DNA MER1_type 0 225 1 1 1618 418 313 109 88 chr4 135497952 135498157 -20131963 - L1MB8 LINE L1 -193 5985 5783 1 1618 302 324 9 45 chr4 135498169 135498265 -20131855 - RMER30 DNA MER1_type -1 201 110 1 1618 276 229 16 0 chr4 135498265 135498326 -20131794 - ORR1D2 LTR MaLR -1 369 308 1 1618 1195 43 164 6 chr4 135498420 135498585 -20131535 + B2_Mm2 SINE B2 1 191 -4 1 1618 287 104 0 20 chr4 135498593 135498642 -20131478 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 1 1618 313 225 357 7 chr4 135498655 135498798 -20131322 + MTD LTR MaLR 197 389 -30 1 1618 204 291 0 10 chr4 135498802 135498906 -20131214 + (GTTTG)n Simple_repeat Simple_repeat 2 104 0 1 1618 510 242 8 30 chr4 135498963 135499095 -20131025 - B1F SINE Alu -6 143 15 1 1618 198 0 0 0 chr4 135500034 135500056 -20130064 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1618 603 163 0 0 chr4 135500056 135500154 -20129966 - PB1D9 SINE Alu -12 108 11 2 1618 1133 67 0 0 chr4 135500154 135500304 -20129816 + B2_Mm2 SINE B2 2 151 -44 3 1618 554 261 0 8 chr4 135500306 135500426 -20129694 - ID_B1 SINE B4 -10 214 96 4 1618 230 243 68 120 chr4 135500478 135500595 -20129525 + RLTR25B LTR ERVK 399 509 -519 5 1618 296 263 20 69 chr4 135500501 135500603 -20129517 + MT2B LTR ERVL 168 264 -337 6 1618 712 80 0 0 chr4 135500538 135500638 -20129482 + B1_Mus2 SINE Alu 48 147 0 7 1618 1060 149 0 0 chr4 135500651 135500799 -20129321 + B1_Mus1 SINE Alu 1 148 0 8 1618 714 90 126 0 chr4 135500821 135500932 -20129188 + B2_Mm1t SINE B2 2 126 -67 9 1618 374 107 13 0 chr4 135500961 135501025 -20129095 + B2_Mm2 SINE B2 46 115 -83 1 1618 21 36 0 0 chr4 135501039 135501067 -20129053 + AT_rich Low_complexity Low_complexity 1 28 0 1 1618 235 220 0 0 chr4 135501266 135501316 -20128804 + B3 SINE B2 165 214 -2 1 1618 260 291 48 113 chr4 135501300 135501424 -20128696 + MT2B LTR ERVL 125 240 -361 1 1618 273 291 9 104 chr4 135501328 135501443 -20128677 + ID_B1 SINE B4 79 182 -42 1 1618 440 254 17 50 chr4 135501340 135501460 -20128660 + B1_Mus1 SINE Alu 6 121 -27 1 1618 268 164 0 18 chr4 135501456 135501512 -20128608 - B2_Mm2 SINE B2 -94 101 47 1 1618 963 99 178 0 chr4 135501545 135501697 -20128423 - B2_Mm1t SINE B2 -14 179 1 1 1618 363 291 86 7 chr4 135502086 135502238 -20127882 - LTR31 LTR ERV1 -166 453 290 1 1618 1162 55 0 7 chr4 135503278 135503425 -20126695 + B1_Mus2 SINE Alu 2 147 0 1 1618 285 155 0 0 chr4 135503427 135503485 -20126635 + A-rich Low_complexity Low_complexity 1 58 0 2 1618 270 0 0 0 chr4 135503631 135503661 -20126459 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2 1618 418 212 186 0 chr4 135503661 135503774 -20126346 - B1_Mm SINE Alu -13 134 1 2 1618 636 152 49 83 chr4 135503886 135504030 -20126090 - B1_Mur4 SINE Alu -1 149 11 2 1618 458 261 43 103 chr4 135503890 135504074 -20126046 - B4 SINE B4 -71 221 49 2 1618 441 271 20 89 chr4 135504101 135504247 -20125873 - ID_B1 SINE B4 -7 217 82 2 1618 182 351 26 0 chr4 135504333 135504410 -20125710 - L2c LINE L2 -9 3378 3300 2 1618 294 73 0 0 chr4 135504519 135504560 -20125560 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2 1618 830 168 189 6 chr4 135504560 135504740 -20125380 - B3 SINE B2 -3 213 1 2 1618 708 255 85 0 chr4 135504928 135505116 -20125004 + B3 SINE B2 2 205 -11 2 1618 1237 41 0 7 chr4 135505141 135505288 -20124832 - B1_Mus1 SINE Alu 0 148 3 3 1618 1209 49 0 0 chr4 135505728 135505870 -20124250 + B1_Mus1 SINE Alu 2 143 -5 3 1618 376 294 82 67 chr4 135506594 135506802 -20123318 + L1ME4a LINE L1 5760 5970 -154 3 1618 1425 57 17 0 chr4 135506835 135507012 -20123108 + B2_Mm2 SINE B2 2 181 -14 3 1618 587 183 87 0 chr4 135507142 135507257 -20122863 + B3 SINE B2 1 125 -91 3 1618 1019 105 0 0 chr4 135507371 135507514 -20122606 - B1_Mur4 SINE Alu -2 148 6 3 1618 547 239 45 111 chr4 135507514 135507527 -20122593 - B4 SINE B4 -69 223 80 3 1618 611 235 54 89 chr4 135507527 135507751 -20122369 - B3 SINE B2 0 216 1 3 1618 547 239 45 111 chr4 135507751 135507792 -20122328 - B4 SINE B4 -213 79 39 3 1618 207 240 0 20 chr4 135508658 135508709 -20121411 + MIR3 SINE MIR 157 206 -2 3 1618 2536 64 0 104 chr4 135508747 135508825 -20121295 - ORR1A2 LTR MaLR 0 327 287 3 1618 1191 82 0 0 chr4 135508825 135508972 -20121148 - B1_Mus1 SINE Alu 0 148 2 4 1618 2536 64 0 104 chr4 135508972 135509258 -20120862 - ORR1A2 LTR MaLR -41 286 1 3 1618 1576 29 0 0 chr4 135509471 135509646 -20120474 + B2_Mm1a SINE B2 1 175 -18 4 1618 396 0 0 0 chr4 135509647 135509691 -20120429 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 1618 234 0 0 0 chr4 135510215 135510241 -20119879 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1618 430 217 98 30 chr4 135510286 135510419 -20119701 - B3 SINE B2 -1 215 74 4 1618 865 98 0 22 chr4 135510648 135510661 -20119459 - B1_Mur4 SINE Alu 0 150 140 4 1618 225 0 0 0 chr4 135510661 135510686 -20119434 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1618 865 98 0 22 chr4 135510686 135510808 -20119312 - B1_Mur4 SINE Alu -11 139 18 4 1618 331 231 25 115 chr4 135510710 135510832 -20119288 - MT2B LTR ERVL -337 264 154 4 1618 708 290 104 26 chr4 135510890 135511198 -20118922 - MLT1C LTR MaLR -102 365 34 4 1618 22 0 0 0 chr4 135511202 135511224 -20118896 + AT_rich Low_complexity Low_complexity 1 22 0 4 1618 501 218 0 26 chr4 135511224 135511337 -20118783 - RSINE1 SINE B4 -54 111 2 5 1618 288 77 0 0 chr4 135511353 135511392 -20118728 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1618 335 273 127 40 chr4 135511784 135511910 -20118210 - B1_Mur3 SINE Alu -11 138 2 5 1618 672 190 0 0 chr4 135512148 135512311 -20117809 + CT-rich Low_complexity Low_complexity 2 164 0 5 1618 264 250 0 0 chr4 135512312 135512376 -20117744 + C-rich Low_complexity Low_complexity 26 89 0 5 1618 430 174 9 84 chr4 135512750 135512857 -20117263 - PB1D9 SINE Alu -13 107 9 5 1618 225 317 34 47 chr4 135512857 135512891 -20117229 - B4 SINE B4 -88 180 58 5 1618 287 169 33 17 chr4 135512986 135513046 -20117074 + 4.5SRNA scRNA scRNA 26 86 -8 5 1618 817 47 0 0 chr4 135512998 135513104 -20117016 + B1_Mm SINE Alu 42 147 0 5 1618 315 0 0 0 chr4 135513104 135513139 -20116981 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1618 1400 68 23 0 chr4 135513140 135513317 -20116803 - B2_Mm2 SINE B2 -14 181 1 6 1618 652 167 0 50 chr4 135513348 135513468 -20116652 - PB1D9 SINE Alu -6 114 1 6 1618 334 305 104 30 chr4 135513505 135513519 -20116601 - B1F SINE Alu -3 146 135 6 1618 856 151 13 52 chr4 135513519 135513673 -20116447 - B1_Mur4 SINE Alu 0 150 3 6 1618 334 305 104 30 chr4 135513673 135513793 -20116327 - B1F SINE Alu -15 134 2 6 1618 183 342 57 41 chr4 135515252 135515374 -20114746 - MIRm SINE MIR -94 182 59 6 1618 560 208 0 0 chr4 135516244 135516345 -20113775 - RSINE1 SINE B4 -62 103 3 6 1618 532 217 75 0 chr4 135518732 135518852 -20111268 - B4 SINE B4 -79 213 85 6 1618 252 0 0 0 chr4 135518857 135518885 -20111235 + (TTA)n Simple_repeat Simple_repeat 2 29 0 6 1618 272 271 39 91 chr4 135518967 135519121 -20110999 - B2_Mm2 SINE B2 -14 181 36 6 1618 335 44 0 0 chr4 135519118 135519163 -20110957 - B1_Mur4 SINE Alu -103 47 3 6 1618 208 305 166 19 chr4 135520982 135521139 -20108981 - MIR SINE MIR -71 191 12 7 1618 189 0 0 0 chr4 135521458 135521479 -20108641 + (CCA)n Simple_repeat Simple_repeat 1 21 0 7 1618 1144 84 132 0 chr4 135521605 135521771 -20108349 + B2_Mm1t SINE B2 1 188 -5 7 1618 233 169 231 0 chr4 135521786 135521851 -20108269 + B1_Mur2 SINE Alu 5 85 -64 7 1618 270 318 0 23 chr4 135527058 135527145 -20102975 + RSINE1 SINE B4 2 86 -79 7 1618 872 157 18 3 chr4 135527067 135527248 -20102872 + B3 SINE B2 8 198 0 7 1618 248 77 0 25 chr4 135527248 135527288 -20102832 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 7 1619 259 267 40 13 chr4 135529095 135529171 -20100949 - MIR3 SINE MIR -30 178 101 7 1619 196 292 72 45 chr4 135529198 135529309 -20100811 + MIR SINE MIR 105 218 -44 7 1619 431 257 9 9 chr4 135530136 135530242 -20099878 - B1_Mur2 SINE Alu -42 107 2 7 1619 296 322 92 14 chr4 135530260 135530436 -20099684 - B4A SINE B4 -91 201 15 8 1619 1181 78 12 0 chr4 135530440 135530607 -20099513 - B2_Mm2 SINE B2 -26 169 1 8 1619 275 257 40 0 chr4 135530607 135530681 -20099439 - ID4 SINE ID -1 82 6 8 1619 977 252 10 5 chr4 135531050 135531257 -20098863 - B3 SINE B2 -7 209 2 8 1619 454 219 33 8 chr4 135532836 135532956 -20097164 + B1_Mur1 SINE Alu 27 149 0 8 1619 367 305 78 0 chr4 135533387 135533515 -20096605 + B1F2 SINE Alu 12 149 0 8 1619 813 101 0 0 chr4 135533523 135533662 -20096458 + (GGAA)n Simple_repeat Simple_repeat 4 142 0 8 1619 1267 88 66 0 chr4 135533663 135533844 -20096276 + B2_Mm2 SINE B2 2 194 -1 8 1619 1687 26 0 0 chr4 135533997 135534186 -20095934 - B2_Mm1a SINE B2 -3 190 2 8 1619 1558 47 16 0 chr4 135534186 135534376 -20095744 - B2_Mm1t SINE B2 0 193 1 8 1619 214 333 0 0 chr4 135535364 135535421 -20094699 + polypyrimidine Low_complexity Low_complexity 3 59 0 9 1619 810 192 13 20 chr4 135535421 135535570 -20094550 - B1_Mur2 SINE Alu 0 149 2 9 1619 1268 113 26 16 chr4 135535598 135535612 -20094508 - B2_Mm2 SINE B2 -4 191 180 9 1619 1391 82 11 0 chr4 135535612 135535795 -20094325 - B2_Mm1a SINE B2 -6 187 3 9 1619 1268 113 26 16 chr4 135535795 135535969 -20094151 - B2_Mm2 SINE B2 -16 179 1 9 1619 754 98 0 22 chr4 135536003 135536108 -20094012 + BC1_Mm scRNA scRNA 2 104 -48 9 1619 1258 41 0 0 chr4 135536108 135536254 -20093866 + B1_Mus2 SINE Alu 2 147 0 9 1619 754 98 0 22 chr4 135536254 135536283 -20093837 + BC1_Mm scRNA scRNA 105 133 -19 9 1619 1269 102 11 6 chr4 135536345 135536523 -20093597 + B2_Mm1t SINE B2 1 179 -14 9 1619 452 147 220 17 chr4 135536589 135536707 -20093413 + B2_Mm2 SINE B2 47 188 -7 9 1619 1507 278 72 96 chr4 135536996 135537085 -20093035 + L1MA5 LINE L1 5268 5352 -948 9 1619 432 257 79 0 chr4 135537085 135537186 -20092934 + PB1D10 SINE Alu 1 109 -8 9 1619 1507 278 72 96 chr4 135537186 135537338 -20092782 + L1MA5 LINE L1 5353 5491 -809 9 1619 1411 58 30 50 chr4 135537338 135537537 -20092583 + B2_Mm2 SINE B2 1 195 0 1 1619 1507 278 72 96 chr4 135537537 135538153 -20091967 + L1MA5 LINE L1 5492 6106 -194 9 1619 284 337 0 11 chr4 135538175 135538268 -20091852 + PB1D7 SINE Alu 27 118 -2 1 1619 1382 83 61 0 chr4 135538293 135538473 -20091647 + B2_Mm2 SINE B2 2 192 -3 1 1619 1002 79 0 0 chr4 135538501 135538640 -20091480 + B1_Mus1 SINE Alu 10 148 0 1 1619 234 143 0 0 chr4 135538640 135538689 -20091431 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1619 884 130 0 22 chr4 135538719 135538853 -20091267 + B1_Mus2 SINE Alu 2 132 -15 1 1619 207 246 0 0 chr4 135538853 135538910 -20091210 + GA-rich Low_complexity Low_complexity 1 57 0 1 1619 455 250 18 119 chr4 135538966 135539039 -20091081 + B3 SINE B2 60 127 -89 1 1619 612 73 82 10 chr4 135539039 135539136 -20090984 - PB1D9 SINE Alu -15 105 2 1 1619 455 250 18 119 chr4 135539136 135539230 -20090890 + B3 SINE B2 128 210 -6 1 1619 476 311 11 62 chr4 135539455 135539633 -20090487 - B3A SINE B2 0 198 30 1 1619 599 301 21 0 chr4 135539728 135539871 -20090249 - B1F SINE Alu -3 146 1 1 1619 1354 87 11 5 chr4 135539900 135540086 -20090034 + B2_Mm1t SINE B2 1 187 -6 1 1619 665 229 189 13 chr4 135540086 135540245 -20089875 - B3A SINE B2 -11 187 1 1 1619 965 196 33 42 chr4 135540245 135540458 -20089662 - B3 SINE B2 0 216 6 1 1619 896 280 78 11 chr4 135540476 135540747 -20089373 - B4 SINE B4 -2 290 2 1 1619 1424 109 10 0 chr4 135540966 135541159 -20088961 + B2_Mm2 SINE B2 1 195 0 1 1619 380 241 0 0 chr4 135541307 135541386 -20088734 + ID4 SINE ID 2 80 -3 1 1619 397 226 0 0 chr4 135541414 135541498 -20088622 + PB1D9 SINE Alu 33 116 -4 1 1619 246 293 0 100 chr4 135541417 135541527 -20088593 + MT2B LTR ERVL 193 291 -310 1 1619 180 111 0 0 chr4 135541584 135541611 -20088509 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1619 180 176 0 0 chr4 135541613 135541647 -20088473 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1 1619 215 197 0 47 chr4 135541725 135541789 -20088331 - B4A SINE B4 -230 62 2 1 1619 180 0 0 0 chr4 135542130 135542150 -20087970 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1619 485 250 86 0 chr4 135543518 135543646 -20086474 - ID_B1 SINE B4 -7 217 79 1 1619 189 0 0 0 chr4 135543684 135543705 -20086415 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1 1619 621 266 82 65 chr4 135543707 135543739 -20086381 - B4A SINE B4 -42 250 229 1 1619 581 246 0 98 chr4 135543739 135543892 -20086228 - B1_Mur1 SINE Alu -10 139 2 1 1619 621 266 82 65 chr4 135543892 135544104 -20086016 - B4A SINE B4 -64 228 2 1 1619 198 255 81 45 chr4 135544139 135544250 -20085870 + MIRb SINE MIR 50 164 -104 1 1619 1525 43 37 16 chr4 135544306 135544496 -20085624 + B2_Mm2 SINE B2 2 195 0 1 1619 926 71 103 0 chr4 135544507 135544633 -20085487 + B1_Mm SINE Alu 1 139 -8 1 1619 759 170 22 0 chr4 135544674 135544809 -20085311 + B1_Mm SINE Alu 9 146 -1 1 1619 216 305 50 43 chr4 135544932 135545065 -20085055 + MIRc SINE MIR 2 130 -138 1 1619 1163 112 24 16 chr4 135545168 135545374 -20084746 + B2_Mm2 SINE B2 2 206 -10 1 1619 1096 96 0 14 chr4 135545416 135545564 -20084556 - B1_Mus1 SINE Alu -1 147 2 1 1619 23 0 0 0 chr4 135545580 135545603 -20084517 + AT_rich Low_complexity Low_complexity 1 23 0 1 1619 391 265 34 17 chr4 135545608 135545727 -20084393 - B4A SINE B4 -77 215 95 1 1619 184 267 51 39 chr4 135545852 135545930 -20084190 - MIR SINE MIR -115 147 69 1 1619 324 0 0 0 chr4 135546278 135546314 -20083806 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1619 443 240 21 10 chr4 135546314 135546411 -20083709 - RSINE1 SINE B4 -53 112 15 1 1619 325 290 45 22 chr4 135546453 135546572 -20083548 - B1F SINE Alu 0 117 1 1 1619 548 234 39 13 chr4 135546749 135546908 -20083212 - MLT1F LTR MaLR -29 519 357 1 1619 680 306 51 30 chr4 135546934 135547170 -20082950 - MLT1F LTR MaLR -307 241 1 1 1619 306 0 0 0 chr4 135547244 135547278 -20082842 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1619 1213 29 0 0 chr4 135547278 135547416 -20082704 - B1_Mus2 SINE Alu -9 138 1 1 1619 1809 167 46 38 chr4 135547540 135547908 -20082212 + ORR1D1 LTR MaLR 3 373 -1 1 1619 525 252 21 56 chr4 135547964 135548107 -20082013 - RSINE1 SINE B4 -25 140 3 1 1619 1154 58 0 0 chr4 135548163 135548301 -20081819 + B1_Mus1 SINE Alu 1 138 -10 1 1619 396 0 0 0 chr4 135548301 135548345 -20081775 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1619 741 238 126 11 chr4 135548479 135548670 -20081450 - B3 SINE B2 0 216 4 1 1619 674 203 17 0 chr4 135548689 135548807 -20081313 + PB1D9 SINE Alu 1 120 0 1 1619 1359 104 16 5 chr4 135548837 135549030 -20081090 + B2_Mm2 SINE B2 1 195 0 1 1619 325 261 231 11 chr4 135549070 135549252 -20080868 + B4A SINE B4 51 272 -20 1 1619 385 196 88 53 chr4 135549296 135549409 -20080711 + PB1D10 SINE Alu 1 117 0 1 1619 659 201 99 12 chr4 135549530 135549701 -20080419 - B3 SINE B2 -30 186 1 1 1619 400 243 72 36 chr4 135549856 135549967 -20080153 - PB1D10 SINE Alu -2 115 1 1 1619 330 324 13 57 chr4 135549973 135550130 -20079990 - MLT1A0 LTR MaLR -214 151 2 1 1619 1224 21 21 0 chr4 135550165 135550309 -20079811 + B1_Mus1 SINE Alu 2 148 0 1 1619 753 289 22 18 chr4 135550310 135550539 -20079581 - Lx6 LINE L1 -19 7441 7212 1 1619 219 25 75 0 chr4 135550539 135550579 -20079541 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1619 5669 133 65 7 chr4 135550902 135551894 -20078226 + MurERV4-int LTR ERVK 1812 2861 -2399 1 1619 1420 101 16 0 chr4 135551898 135552087 -20078033 + B2_Mm2 SINE B2 2 193 -2 1 1619 2090 144 72 0 chr4 135552091 135552452 -20077668 + ORR1B1 LTR MaLR 1 387 -7 1 1619 903 158 11 57 chr4 135552457 135552632 -20077488 + MurERV4-int LTR ERVK 2858 3024 -2236 1 1619 409 213 23 58 chr4 135552639 135552813 -20077307 - RMER17C LTR ERVK -137 273 106 1 1619 1580 138 25 62 chr4 135552813 135552856 -20077264 + MurERV4-int LTR ERVK 3016 3058 -2202 1 1619 1220 48 0 13 chr4 135552856 135553005 -20077115 + B1_Mus1 SINE Alu 2 148 0 1 1619 270 0 0 0 chr4 135553013 135553043 -20077077 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1619 315 0 0 0 chr4 135553043 135553077 -20077043 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1619 1580 138 25 62 chr4 135553077 135553348 -20076772 + MurERV4-int LTR ERVK 3059 3327 -1933 1 1619 1209 62 0 0 chr4 135553870 135554016 -20076104 - B1_Mus2 SINE Alu -1 146 1 1 1619 7861 139 25 58 chr4 135554142 135554205 -20075915 + MurERV4-int LTR ERVK 3315 3378 -1882 1 1619 1019 155 16 32 chr4 135554205 135554392 -20075728 - B2_Mm2 SINE B2 -11 184 1 1 1619 7861 139 25 58 chr4 135554392 135555483 -20074637 + MurERV4-int LTR ERVK 3379 4418 -842 1 1619 1225 61 0 0 chr4 135555483 135555630 -20074490 - B1_Mus2 SINE Alu 0 147 1 1 1619 7861 139 25 58 chr4 135555630 135556055 -20074065 + MurERV4-int LTR ERVK 4419 4843 -417 1 1619 421 238 0 95 chr4 135556055 135556171 -20073949 + MT2B LTR ERVL 154 258 -343 1 1619 967 86 0 14 chr4 135556076 135556217 -20073903 + B1_Mus1 SINE Alu 10 148 0 1 1619 2292 142 43 10 chr4 135556217 135556616 -20073504 + MurERV4-int LTR ERVK 4849 5260 0 1 1619 1191 49 21 0 chr4 135556656 135556800 -20073320 - B1_Mus2 SINE Alu 0 147 1 1 1619 2323 173 76 65 chr4 135556800 135556844 -20073276 + RMER4B LTR ERVK 17 57 -528 1 1619 1328 82 22 5 chr4 135556844 135557028 -20073092 - B2_Mm2 SINE B2 -8 187 1 1 1619 2323 173 76 65 chr4 135557028 135557496 -20072624 + RMER4B LTR ERVK 58 537 -48 1 1619 1347 70 43 5 chr4 135557496 135557683 -20072437 + B2_Mm2 SINE B2 1 194 -1 1 1619 2323 173 76 65 chr4 135557683 135557731 -20072389 + RMER4B LTR ERVK 538 585 0 1 1619 411 228 76 0 chr4 135557731 135557810 -20072310 + B1F1 SINE Alu 12 96 -53 1 1619 1379 90 21 0 chr4 135558102 135558290 -20071830 + B2_Mm1a SINE B2 2 193 0 1 1619 181 306 118 25 chr4 135558487 135558648 -20071472 + MIRb SINE MIR 37 212 -56 1 1619 210 37 0 0 chr4 135558678 135558705 -20071415 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1619 1000 60 104 0 chr4 135558798 135558932 -20071188 + B1_Mus1 SINE Alu 1 148 0 1 1619 249 119 0 0 chr4 135561157 135561199 -20068921 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1619 234 352 90 41 chr4 135561820 135561965 -20068155 - MamGypLTR1b LTR Gypsy -282 500 349 1 1619 441 259 221 26 chr4 135562547 135562737 -20067383 - B4 SINE B4 -12 280 54 1 1619 386 80 0 0 chr4 135563210 135563260 -20066860 - URR1B DNA MER1_type 0 225 176 1 1619 1278 65 0 17 chr4 135563256 135563429 -20066691 + B2_Mm2 SINE B2 17 186 -9 1 1619 993 173 11 23 chr4 135563427 135563604 -20066516 - URR1B DNA MER1_type -36 189 15 1 1619 180 0 0 0 chr4 135564025 135564045 -20066075 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1619 1097 62 7 33 chr4 135564046 135564197 -20065923 + B1_Mus1 SINE Alu 2 148 0 1 1619 1452 78 10 0 chr4 135564210 135564403 -20065717 + B2_Mm2 SINE B2 1 195 0 1 1619 1717 31 0 0 chr4 135564403 135564596 -20065524 + B2_Mm1t SINE B2 1 193 0 1 1619 741 165 105 0 chr4 135564616 135564749 -20065371 + B1_Mus1 SINE Alu 1 147 -1 1 1619 606 232 21 14 chr4 135565367 135565511 -20064609 + B3 SINE B2 70 214 -2 1 1619 758 179 32 0 chr4 135565515 135565638 -20064482 + B1_Mur1 SINE Alu 23 149 0 1 1619 270 0 0 0 chr4 135565961 135565991 -20064129 + (CTATA)n Simple_repeat Simple_repeat 2 31 0 1 1619 439 248 23 46 chr4 135567378 135567509 -20062611 + ID_B1 SINE B4 97 224 0 1 1619 355 289 54 69 chr4 135567534 135567664 -20062456 + ID_B1 SINE B4 94 221 -3 1 1619 368 293 104 16 chr4 135567668 135567793 -20062327 + RSINE1 SINE B4 2 137 -28 1 1619 591 150 126 1 chr4 135567925 135568058 -20062062 + B1_Mur4 SINE Alu 3 150 0 1 1619 1721 26 0 0 chr4 135568082 135568275 -20061845 + B2_Mm1a SINE B2 1 193 0 1 1619 468 207 34 68 chr4 135568477 135568653 -20061467 - RMER17B LTR ERVK -494 464 295 1 1619 345 100 0 0 chr4 135569203 135569253 -20060867 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1619 232 125 25 0 chr4 135569257 135569297 -20060823 - B1F SINE Alu -13 136 96 1 1619 23 0 0 0 chr4 135569397 135569420 -20060700 + AT_rich Low_complexity Low_complexity 1 23 0 1 1619 387 0 0 0 chr4 135569425 135569468 -20060652 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1619 390 286 38 0 chr4 135569510 135569615 -20060505 - B3A SINE B2 -82 116 8 2 1619 639 276 31 46 chr4 135569654 135569848 -20060272 + B3A SINE B2 8 198 0 2 1619 519 211 22 32 chr4 135570088 135570224 -20059896 - L1MB8 LINE L1 -1778 6007 5875 2 1619 868 327 46 7 chr4 135570637 135570682 -20059438 - B4 SINE B4 0 292 240 2 1619 238 268 175 0 chr4 135570682 135570779 -20059341 + PB1D10 SINE Alu 2 115 -2 2 1619 868 327 46 7 chr4 135570779 135571013 -20059107 - B4 SINE B4 -53 239 3 2 1619 233 342 27 0 chr4 135571035 135571108 -20059012 - ID4_ SINE ID 0 83 9 2 1619 1343 78 45 0 chr4 135571155 135571334 -20058786 - B2_Mm2 SINE B2 -8 187 1 2 1619 231 256 11 109 chr4 135571370 135571462 -20058658 - ID_B1 SINE B4 -67 157 75 2 1619 858 164 179 11 chr4 135571527 135571706 -20058414 + B3 SINE B2 1 209 -7 2 1619 331 304 8 115 chr4 135571731 135571861 -20058259 + PB1D10 SINE Alu 2 117 0 2 1619 363 23 0 0 chr4 135572199 135572243 -20057877 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1619 431 322 39 7 chr4 135572262 135572415 -20057705 + MIRb SINE MIR 93 250 -18 2 1619 1246 94 77 6 chr4 135572733 135572915 -20057205 + B2_Mm2 SINE B2 1 195 0 2 1619 667 254 22 0 chr4 135572915 135573053 -20057067 + B3A SINE B2 28 168 -30 2 1619 1140 62 7 7 chr4 135573128 135573274 -20056846 - B1_Mm SINE Alu -1 146 1 2 1619 1009 148 53 32 chr4 135573300 135573489 -20056631 + B2_Mm1a SINE B2 1 193 0 2 1619 226 214 0 56 chr4 135573489 135573519 -20056601 + A-rich Low_complexity Low_complexity 1 30 0 2 1619 1185 197 9 9 chr4 135573519 135573734 -20056386 + B3 SINE B2 2 216 0 2 1619 226 214 0 56 chr4 135573734 135573761 -20056359 + A-rich Low_complexity Low_complexity 31 53 0 2 1619 1290 34 0 0 chr4 135573761 135573908 -20056212 + B1_Mus2 SINE Alu 1 147 0 2 1619 226 214 0 56 chr4 135573908 135573938 -20056182 + A-rich Low_complexity Low_complexity 54 83 0 2 1619 198 0 0 0 chr4 135573954 135573976 -20056144 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1619 1269 34 0 0 chr4 135573976 135574123 -20055997 - B1_Mus2 SINE Alu 0 147 1 2 1619 1184 75 0 0 chr4 135574527 135574673 -20055447 - B1_Mus1 SINE Alu -1 147 2 2 1619 212 0 0 35 chr4 135577430 135577459 -20052661 + (CCCG)n Simple_repeat Simple_repeat 3 30 0 2 1619 338 296 34 0 chr4 135577917 135578005 -20052115 + RSINE1 SINE B4 63 153 -12 2 1619 290 26 0 25 chr4 135578193 135578233 -20051887 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 1619 857 194 0 0 chr4 135578240 135578384 -20051736 - B1_Mur4 SINE Alu -6 144 1 2 1619 24 77 0 0 chr4 135578386 135578438 -20051682 + AT_rich Low_complexity Low_complexity 1 52 0 2 1619 1241 48 0 0 chr4 135578476 135578622 -20051498 + B1_Mm SINE Alu 2 147 0 2 1619 1161 78 0 0 chr4 135578643 135578785 -20051335 + B1_Mus1 SINE Alu 1 142 -6 2 1619 855 73 0 0 chr4 135578786 135578895 -20051225 - B1_Mm SINE Alu -26 121 13 2 1619 423 232 0 124 chr4 135578928 135579041 -20051079 - B1_Mur2 SINE Alu -10 139 41 2 1619 210 150 0 0 chr4 135579042 135579082 -20051038 + (CCCCCT)n Simple_repeat Simple_repeat 6 45 0 2 1619 479 254 81 40 chr4 135579155 135579303 -20050817 + RSINE1 SINE B4 2 155 -10 2 1619 396 0 0 0 chr4 135579307 135579351 -20050769 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1619 288 0 0 0 chr4 135579351 135579382 -20050738 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1619 233 265 7 45 chr4 135579395 135579549 -20050571 + ORR1B1-int LTR MaLR 607 754 -755 2 1619 1023 54 0 0 chr4 135579449 135579578 -20050542 + B1_Mus2 SINE Alu 8 136 -11 2 1619 774 84 0 0 chr4 135579578 135579685 -20050435 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 2 1619 519 267 0 51 chr4 135579871 135579901 -20050219 + ID_B1 SINE B4 65 214 -10 2 1619 782 159 16 16 chr4 135579901 135580029 -20050091 + B1_Mur2 SINE Alu 12 139 -10 2 1619 609 52 0 0 chr4 135580029 135580106 -20050014 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2 1619 496 189 236 0 chr4 135580601 135580707 -20049413 + B1_Mur3 SINE Alu 19 149 0 2 1619 4326 81 2 2 chr4 135580757 135581326 -20048794 + MT2B2 LTR ERVL 16 584 0 2 1619 1298 103 16 16 chr4 135581356 135581544 -20048576 - B2_Mm2 SINE B2 -4 191 4 2 1619 283 0 47 23 chr4 135581550 135581593 -20048527 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1619 427 255 10 0 chr4 135581593 135581695 -20048425 - B1F1 SINE Alu -10 139 37 2 1619 335 67 0 0 chr4 135581767 135581812 -20048308 + B1_Mm SINE Alu 101 145 -2 2 1619 183 80 80 0 chr4 135581819 135581869 -20048251 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2 1619 1099 210 40 8 chr4 135581927 135582177 -20047943 + RLTR33 LTR ERVK 1 258 -420 2 1619 1120 114 0 54 chr4 135582102 135582288 -20047832 + B2_Mm2 SINE B2 20 195 0 2 1619 1439 144 23 5 chr4 135582284 135582603 -20047517 + RLTR33 LTR ERVK 173 538 -140 2 1619 288 0 0 0 chr4 135582603 135582635 -20047485 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1619 702 82 64 0 chr4 135582738 135582848 -20047272 - L1Md_A LINE L1 -6402 322 206 2 1619 660 209 40 20 chr4 135582848 135582999 -20047121 + RLTR33 LTR ERVK 525 678 0 2 1619 215 239 111 14 chr4 135584672 135584744 -20045376 - ID4 SINE ID -2 81 3 2 1619 1201 199 0 9 chr4 135584847 135585060 -20045060 + B3 SINE B2 5 215 -1 2 1619 952 136 14 0 chr4 135585236 135585383 -20044737 + B1_Mur4 SINE Alu 2 150 0 2 1619 465 188 0 34 chr4 135585445 135585533 -20044587 - MTD LTR MaLR -2 417 333 2 1619 1301 169 83 7 chr4 135585538 135585815 -20044305 - MTC LTR MaLR -14 393 94 2 1619 368 147 107 78 chr4 135585880 135585983 -20044137 - B3A SINE B2 -92 106 1 2 1619 252 0 0 0 chr4 135586170 135586198 -20043922 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1619 1112 227 14 5 chr4 135586269 135586490 -20043630 + ID_B1 SINE B4 1 223 -1 2 1619 1188 62 7 0 chr4 135586502 135586648 -20043472 + B1_Mus2 SINE Alu 1 147 0 2 1619 23 33 0 0 chr4 135586678 135586708 -20043412 + AT_rich Low_complexity Low_complexity 1 30 0 2 1619 216 232 268 0 chr4 135586751 135586807 -20043313 - B3A SINE B2 -91 107 37 2 1619 467 260 24 16 chr4 135587810 135587935 -20042185 - ID_B1 SINE B4 0 224 99 2 1619 283 273 116 27 chr4 135587935 135587951 -20042169 + YREP_Mm Unknown Unknown 191 315 -1497 2 1619 851 140 34 20 chr4 135587970 135588116 -20042004 - B1_Mur4 SINE Alu -2 148 1 2 1619 571 241 231 8 chr4 135588178 135588416 -20041704 - B4A SINE B4 0 292 2 2 1619 208 213 43 0 chr4 135588481 135588528 -20041592 + CT-rich Low_complexity Low_complexity 4 52 0 2 1619 360 0 0 0 chr4 135588528 135588568 -20041552 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1619 596 255 0 69 chr4 135588571 135588731 -20041389 - RSINE1 SINE B4 -15 150 2 2 1619 411 207 254 17 chr4 135588784 135588902 -20041218 + B1_Mus1 SINE Alu 3 148 0 2 1619 1172 111 47 0 chr4 135588905 135589076 -20041044 + B2_Mm2 SINE B2 2 180 -15 2 1619 1258 28 14 0 chr4 135589076 135589221 -20040899 + B1_Mus1 SINE Alu 2 148 0 2 1619 285 173 0 19 chr4 135589270 135589323 -20040797 + B3 SINE B2 3 54 -162 2 1619 207 0 0 0 chr4 135589334 135589357 -20040763 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1619 520 217 26 71 chr4 135589371 135589525 -20040595 + B2_Mm2 SINE B2 3 149 -46 2 1619 542 255 118 89 chr4 135589471 135589607 -20040513 - RMER10A LTR ERVL -13 429 277 2 1619 1358 82 11 0 chr4 135589607 135589791 -20040329 + B2_Mm1t SINE B2 2 187 -6 2 1619 542 255 118 89 chr4 135589791 135590071 -20040049 - RMER10A LTR ERVL -166 276 1 2 1619 420 295 25 59 chr4 135590071 135590190 -20039930 + B3 SINE B2 94 208 -8 2 1619 300 340 68 56 chr4 135590219 135590381 -20039739 - RSINE1 SINE B4 0 165 2 2 1619 302 219 0 9 chr4 135590381 135590462 -20039658 - B4A SINE B4 -197 95 16 2 1619 635 247 169 35 chr4 135590640 135590973 -20039147 + RMER15 LTR ERVL 1 473 -102 2 1619 549 132 112 9 chr4 135590973 135591080 -20039040 + PB1D9 SINE Alu 3 120 0 2 1619 334 271 123 0 chr4 135591090 135591212 -20038908 + RMER15 LTR ERVL 439 575 0 2 1619 270 0 0 0 chr4 135591248 135591278 -20038842 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1619 204 247 129 43 chr4 135591443 135591536 -20038584 + L2c LINE L2 3286 3386 -1 2 1619 232 267 53 13 chr4 135591637 135591713 -20038407 + ID4 SINE ID 1 79 -4 2 1619 476 241 46 9 chr4 135591918 135592013 -20038107 - Zaphod DNA Tip100 -4 4027 3933 2 1619 1674 21 0 15 chr4 135592013 135592208 -20037912 + B2_Mm1t SINE B2 2 193 0 2 1619 476 241 46 9 chr4 135592208 135592221 -20037899 - Zaphod DNA Tip100 -99 3932 3915 2 1619 536 279 21 0 chr4 135592239 135592379 -20037741 + B1F1 SINE Alu 1 143 -6 2 1619 273 250 176 0 chr4 135592429 135592497 -20037623 - B1F SINE Alu -69 80 1 2 1619 346 88 78 117 chr4 135592526 135592603 -20037517 - B1_Mus2 SINE Alu 0 147 74 2 1619 1091 76 0 7 chr4 135592640 135592786 -20037334 + B1_Mur4 SINE Alu 6 150 0 2 1619 1259 121 10 31 chr4 135592835 135593031 -20037089 + B2_Mm1t SINE B2 2 193 0 2 1619 519 193 8 98 chr4 135593044 135593176 -20036944 + PB1D9 SINE Alu 1 120 0 2 1619 1460 62 11 0 chr4 135593203 135593380 -20036740 + B2_Mm2 SINE B2 1 179 -16 2 1619 881 65 8 47 chr4 135593386 135593400 -20036720 - B1_Mus1 SINE Alu 0 148 140 3 1619 234 0 0 0 chr4 135593400 135593426 -20036694 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1619 881 65 8 47 chr4 135593426 135593540 -20036580 - B1_Mus1 SINE Alu -9 139 25 3 1619 343 309 124 64 chr4 135593738 135593956 -20036164 - L1MC4a LINE L1 -1295 6587 6357 3 1619 1816 153 92 6 chr4 135594139 135594467 -20035653 - MTD LTR MaLR -54 365 10 3 1619 522 203 0 0 chr4 135594641 135594764 -20035356 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1619 629 220 8 0 chr4 135594782 135594900 -20035220 + B1_Mur4 SINE Alu 27 145 -5 3 1619 1315 111 11 5 chr4 135594920 135595111 -20035009 + B2_Mm2 SINE B2 2 193 -2 3 1619 356 109 0 18 chr4 135595137 135595193 -20034927 - B2_Mm2 SINE B2 -94 101 47 3 1619 976 112 108 30 chr4 135595240 135595406 -20034714 - B2_Mm1t SINE B2 -14 179 1 3 1619 1642 27 0 0 chr4 135595413 135595599 -20034521 - B2_Mm1a SINE B2 -7 186 1 3 1619 240 35 0 0 chr4 135595622 135595651 -20034469 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1619 1490 48 26 5 chr4 135595666 135595856 -20034264 + B2_Mm2 SINE B2 2 195 0 3 1619 703 258 38 11 chr4 135595889 135596073 -20034047 + B3A SINE B2 2 190 -8 3 1619 1344 49 0 0 chr4 135596278 135596442 -20033678 + B2_Mm2 SINE B2 1 164 -31 3 1619 974 255 82 51 chr4 135596938 135596969 -20033151 - MT2B LTR ERVL -8 593 563 3 1619 297 0 0 0 chr4 135596969 135597002 -20033118 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1619 974 255 82 51 chr4 135597002 135597301 -20032819 - MT2B LTR ERVL -39 562 253 3 1619 864 115 79 0 chr4 135597304 135597443 -20032677 + B1_Mur4 SINE Alu 1 150 0 3 1619 759 22 0 0 chr4 135597721 135597810 -20032310 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 3 1619 213 228 34 34 chr4 135597977 135598036 -20032084 - B2_Mm2 SINE B2 -104 91 33 3 1619 450 0 0 0 chr4 135598286 135598336 -20031784 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1619 1395 75 21 0 chr4 135598429 135598615 -20031505 + B2_Mm2 SINE B2 2 191 -4 3 1619 341 286 0 13 chr4 135598845 135598923 -20031197 + RSINE1 SINE B4 4 80 -85 3 1619 339 271 0 86 chr4 135598909 135599002 -20031118 + PB1D9 SINE Alu 29 113 -7 3 1619 327 316 8 57 chr4 135599003 135599127 -20030993 - RSINE1 SINE B4 0 165 48 3 1619 706 188 58 0 chr4 135599207 135599345 -20030775 + B1_Mur4 SINE Alu 5 150 0 3 1619 912 16 181 31 chr4 135599363 135599490 -20030630 - B1_Mus1 SINE Alu -1 147 2 3 1619 1284 143 19 10 chr4 135599508 135599713 -20030407 - B3 SINE B2 -9 207 1 3 1619 689 129 145 0 chr4 135600403 135600527 -20029593 - B1_Mus2 SINE Alu -5 142 1 3 1619 343 195 195 0 chr4 135600571 135600653 -20029467 - RSINE1 SINE B4 -60 105 8 3 1619 464 246 86 46 chr4 135600823 135600998 -20029122 + B3A SINE B2 1 182 -16 3 1619 386 257 20 10 chr4 135601399 135601501 -20028619 + PB1D7 SINE Alu 9 111 -9 3 1619 1237 41 0 7 chr4 135602312 135602460 -20027660 + B1_Mus1 SINE Alu 1 147 -1 3 1619 207 167 0 0 chr4 135602606 135602642 -20027478 + (CAAAG)n Simple_repeat Simple_repeat 4 39 0 3 1619 321 272 96 10 chr4 135602803 135602907 -20027213 + RSINE1 SINE B4 2 114 -51 3 1619 200 274 138 35 chr4 135603508 135603595 -20026525 - MIR SINE MIR -162 106 11 3 1619 1016 152 34 0 chr4 135603641 135603819 -20026301 + B2_Mm2 SINE B2 12 195 0 3 1619 260 220 66 25 chr4 135603954 135604050 -20026070 + B1_Mm SINE Alu 40 139 -8 3 1619 436 205 328 29 chr4 135604111 135604282 -20025838 - URR1A DNA MER1_type 0 226 5 3 1619 242 276 89 33 chr4 135604457 135604471 -20025649 + ID SINE ID 67 85 -139 3 1619 320 237 77 29 chr4 135604471 135604616 -20025504 + B1F2 SINE Alu 1 145 -4 3 1619 404 236 152 61 chr4 135604653 135604851 -20025269 + B3 SINE B2 1 216 0 3 1619 231 252 102 136 chr4 135604864 135605011 -20025109 + B1_Mm SINE Alu 1 142 -5 3 1619 426 156 19 151 chr4 135606502 135606608 -20023512 + B3 SINE B2 93 184 -32 3 1619 281 173 0 19 chr4 135606607 135606660 -20023460 + PB1 SINE Alu 74 125 -2 3 1619 476 239 36 27 chr4 135607817 135607929 -20022191 - PB1D7 SINE Alu -6 114 2 3 1619 328 197 225 60 chr4 135608164 135608315 -20021805 + B2_Mm2 SINE B2 1 176 -19 3 1619 503 249 261 0 chr4 135609565 135609730 -20020390 + B3 SINE B2 2 209 -7 3 1619 1024 59 81 0 chr4 135609755 135609891 -20020229 + B1_Mus1 SINE Alu 2 148 0 3 1619 946 162 16 50 chr4 135609918 135610100 -20020020 + B2_Mm2 SINE B2 1 176 -19 3 1619 372 250 141 8 chr4 135610164 135610285 -20019835 + B3 SINE B2 80 216 0 3 1619 360 0 0 0 chr4 135610553 135610593 -20019527 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1619 868 204 87 26 chr4 135610912 135610926 -20019194 + RMER4B LTR ERVK 3 14 -571 3 1619 180 0 0 0 chr4 135610926 135610946 -20019174 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1619 1208 55 0 7 chr4 135610950 135611098 -20019022 - B1_Mus2 SINE Alu 0 147 1 3 1619 868 204 87 26 chr4 135611098 135611309 -20018811 + RMER4B LTR ERVK 15 244 -341 3 1619 707 157 17 0 chr4 135611440 135611555 -20018565 + PB1D9 SINE Alu 2 118 -2 3 1619 861 0 28 0 chr4 135611568 135611677 -20018443 + (GA)n Simple_repeat Simple_repeat 2 113 0 3 1619 534 290 19 25 chr4 135611677 135611836 -20018284 + MurERV4-int LTR ERVK 52 209 -5051 3 1619 2355 245 37 91 chr4 135611859 135612586 -20017534 + MurERV4-int LTR ERVK 180 867 -4393 3 1619 623 60 0 0 chr4 135612586 135612669 -20017451 + ORR1B1 LTR MaLR 310 392 -2 3 1619 3113 156 32 21 chr4 135612671 135613366 -20016754 + ORR1B1-int LTR MaLR 1 747 -762 3 1619 655 191 5 122 chr4 135613234 135613453 -20016667 + MT2B LTR ERVL 133 316 -268 3 1619 1017 45 0 0 chr4 135613464 135613596 -20016524 + B1_Mm SINE Alu 16 147 0 3 1619 239 50 50 0 chr4 135613604 135613644 -20016476 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1619 1162 172 37 0 chr4 135614040 135614255 -20015865 + URR1B DNA MER1_type 1 223 -2 3 1619 1641 16 0 0 chr4 135614299 135614491 -20015629 + B2_Mm1a SINE B2 1 192 -1 3 1619 248 159 41 0 chr4 135614538 135614603 -20015517 + PB1D10 SINE Alu 48 125 -2 3 1619 714 172 203 17 chr4 135614610 135614787 -20015333 + B3 SINE B2 2 211 -5 3 1619 312 286 0 13 chr4 135614839 135614917 -20015203 + ID4_ SINE ID 4 80 -3 3 1619 336 208 133 38 chr4 135614943 135615048 -20015072 - PB1D10 SINE Alu -2 115 1 3 1619 565 95 21 21 chr4 135615124 135615220 -20014900 - URR1B DNA MER1_type 0 225 130 3 1619 2347 72 3 12 chr4 135615220 135615542 -20014578 + ORR1A2 LTR MaLR 1 319 -8 3 1619 606 197 33 0 chr4 135615575 135615697 -20014423 - URR1B DNA MER1_type -98 127 2 3 1619 243 211 35 0 chr4 135615736 135615793 -20014327 + CT-rich Low_complexity Low_complexity 1 59 0 3 1619 1048 59 0 0 chr4 135615961 135616096 -20014024 + B1_Mus2 SINE Alu 1 135 -12 3 1619 207 0 0 0 chr4 135616098 135616121 -20013999 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1619 1514 22 22 0 chr4 135616279 135616464 -20013656 - B2_Mm1a SINE B2 -4 189 1 3 1619 1198 48 0 0 chr4 135616466 135616613 -20013507 - B1_Mus1 SINE Alu 0 148 2 3 1619 1369 50 28 0 chr4 135616703 135616885 -20013235 + B2_Mm2 SINE B2 2 188 -7 3 1619 536 254 0 23 chr4 135616999 135617128 -20012992 + B1_Mur4 SINE Alu 18 143 -7 3 1619 1503 197 169 3 chr4 135617576 135617932 -20012188 - MTD LTR MaLR 0 419 5 3 1619 759 215 119 10 chr4 135618165 135618367 -20011753 - ID_B1 SINE B4 0 224 1 3 1619 310 298 87 20 chr4 135618478 135618673 -20011447 - L1MEc LINE L1 -6155 245 38 3 1619 684 279 159 27 chr4 135618757 135619015 -20011105 - B4A SINE B4 0 292 1 3 1619 450 296 9 9 chr4 135619063 135619172 -20010948 - RSINE1 SINE B4 -32 133 25 3 1619 971 191 48 10 chr4 135619174 135619380 -20010740 - B3 SINE B2 -2 214 1 3 1619 818 190 0 0 chr4 135619392 135619534 -20010586 - B1_Mus1 SINE Alu -6 142 1 3 1619 1278 85 10 21 chr4 135619545 135619738 -20010382 - B2_Mm2 SINE B2 -3 192 2 3 1619 678 309 126 8 chr4 135619785 135620046 -20010074 - MLT1A0 LTR MaLR 0 365 74 3 1619 284 254 16 0 chr4 135620046 135620109 -20010011 + B1F SINE Alu 1 64 -85 3 1619 384 22 0 0 chr4 135620146 135620191 -20009929 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 3 1619 570 98 0 0 chr4 135620192 135620274 -20009846 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 3 1619 1148 48 0 7 chr4 135620274 135620422 -20009698 - B1_Mus1 SINE Alu 0 148 2 3 1619 1545 36 0 5 chr4 135620442 135620636 -20009484 - B2_Mm1a SINE B2 0 193 1 3 1619 1174 109 16 16 chr4 135620647 135620833 -20009287 - B2_Mm2 SINE B2 -9 186 1 3 1619 281 262 138 0 chr4 135620834 135620914 -20009206 + B1F SINE Alu 57 147 -2 3 1619 1154 41 7 0 chr4 135620925 135621070 -20009050 + B1_Mus1 SINE Alu 2 147 -1 3 1619 349 244 65 8 chr4 135621518 135621535 -20008585 + B1F SINE Alu 18 148 -1 3 1619 431 274 0 9 chr4 135621535 135621642 -20008478 + ID_B1 SINE B4 118 223 -1 3 1619 1227 80 40 11 chr4 135621647 135621823 -20008297 + B2_Mm2 SINE B2 1 181 -14 3 1619 328 72 0 35 chr4 135621823 135621881 -20008239 - B2_Mm1a SINE B2 -11 182 127 3 1619 26 50 0 0 chr4 135621912 135621952 -20008168 + AT_rich Low_complexity Low_complexity 1 40 0 3 1619 696 184 112 0 chr4 135621994 135622119 -20008001 + B1_Mur4 SINE Alu 1 139 -11 3 1619 434 196 193 14 chr4 135622134 135622279 -20007841 + B3A SINE B2 27 197 -1 3 1619 276 336 33 99 chr4 135622489 135622641 -20007479 - Charlie15a DNA MER1_type -80 144 3 3 1619 1142 94 82 0 chr4 135622707 135622878 -20007242 + B2_Mm1a SINE B2 2 186 -7 4 1619 226 100 39 20 chr4 135622957 135623008 -20007112 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 1619 1064 88 6 60 chr4 135623097 135623109 -20007011 - B2_Mm2 SINE B2 -23 172 161 4 1619 180 0 0 0 chr4 135623109 135623129 -20006991 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1619 1064 88 6 60 chr4 135623129 135623298 -20006822 - B2_Mm2 SINE B2 -35 160 1 4 1619 251 284 59 76 chr4 135623333 135623451 -20006669 + PB1D10 SINE Alu 1 116 -1 4 1619 439 252 277 11 chr4 135623469 135623646 -20006474 + B4A SINE B4 6 229 -63 4 1619 1026 61 0 0 chr4 135623649 135623781 -20006339 + B1_Mus2 SINE Alu 3 134 -13 4 1619 542 15 15 0 chr4 135623783 135623850 -20006270 + (TAA)n Simple_repeat Simple_repeat 2 69 0 4 1619 497 209 25 12 chr4 135623862 135624019 -20006101 - B3 SINE B2 -14 181 25 4 1619 718 200 0 7 chr4 135624024 135624165 -20005955 + B3 SINE B2 15 154 -62 4 1619 528 314 19 0 chr4 135624255 135624414 -20005706 - RSINE1 SINE B4 -2 163 2 4 1619 307 320 39 0 chr4 135624511 135624614 -20005506 - BC1_Mm scRNA scRNA -42 110 4 4 1619 286 365 48 32 chr4 135624628 135624937 -20005183 - RMER12 LTR ERVK -273 1049 736 4 1619 242 320 10 49 chr4 135625289 135625391 -20004729 - MIRc SINE MIR -98 170 73 4 1619 259 294 0 0 chr4 135625596 135625647 -20004473 + ID4 SINE ID 15 65 -18 4 1619 207 0 0 0 chr4 135625698 135625721 -20004399 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 4 1619 411 21 0 0 chr4 135625733 135625781 -20004339 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1619 268 331 31 46 chr4 135626117 135626247 -20003873 + MIRb SINE MIR 25 152 -116 4 1619 371 224 46 21 chr4 135626614 135626730 -20003390 + ID_B1 SINE B4 84 209 -83 4 1619 215 279 32 97 chr4 135627264 135627419 -20002701 + MIRb SINE MIR 108 252 -16 4 1619 952 81 73 0 chr4 135627920 135628056 -20002064 + B1_Mus1 SINE Alu 1 146 -2 4 1619 1135 172 24 5 chr4 135628290 135628500 -20001620 + B3 SINE B2 1 214 -2 4 1619 1044 100 0 0 chr4 135628519 135628659 -20001461 + B1_Mus1 SINE Alu 1 140 -8 4 1619 658 191 71 0 chr4 135628718 135628844 -20001276 + B1_Mur4 SINE Alu 10 144 -6 4 1619 777 245 78 31 chr4 135628927 135629184 -20000936 + B4A SINE B4 16 284 -8 4 1619 745 182 15 0 chr4 135629263 135629395 -20000725 + B1_Mur3 SINE Alu 5 138 -11 4 1619 216 0 0 0 chr4 135629396 135629420 -20000700 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1619 1143 92 6 0 chr4 135629555 135629718 -20000402 + B2_Mm1a SINE B2 1 164 -29 4 1619 192 40 0 0 chr4 135629718 135629743 -20000377 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1619 212 238 175 0 chr4 135629925 135629988 -20000132 + ID4_ SINE ID 2 75 -8 4 1619 677 45 0 11 chr4 135629990 135630080 -20000040 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1619 1293 95 11 0 chr4 135630463 135630652 -19999468 - B2_Mm1t SINE B2 -1 192 2 4 1619 1274 55 16 32 chr4 135630921 135631108 -19999012 - B2_Mm2 SINE B2 -9 186 3 4 1619 785 271 54 21 chr4 135631337 135631578 -19998542 - MTE2b LTR MaLR -28 351 103 4 1619 683 162 14 42 chr4 135631589 135631731 -19998389 + RMER15 LTR ERVL 48 185 -390 4 1619 207 0 0 0 chr4 135632068 135632091 -19998029 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 1619 453 211 106 0 chr4 135632442 135632546 -19997574 - PB1D7 SINE Alu -1 119 5 4 1619 372 216 131 20 chr4 135632553 135632652 -19997468 - PB1D10 SINE Alu 0 117 8 4 1619 21 0 0 0 chr4 135632744 135632765 -19997355 + GC_rich Low_complexity Low_complexity 1 21 0 4 1619 345 309 131 57 chr4 135633021 135633426 -19996694 + L2a LINE L2 2922 3356 -70 4 1619 358 237 31 0 chr4 135633812 135633909 -19996211 + PB1D10 SINE Alu 17 116 -1 4 1619 270 317 77 62 chr4 135633914 135633944 -19996176 + B3A SINE B2 1 30 -168 4 1619 374 0 22 0 chr4 135633944 135633990 -19996130 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1619 270 317 77 62 chr4 135633990 135634144 -19995976 + B3A SINE B2 31 190 -8 4 1619 1224 75 27 5 chr4 135634144 135634332 -19995788 + B2_Mm1a SINE B2 1 192 -1 4 1619 1071 89 7 0 chr4 135634343 135634489 -19995631 + B1_Mus1 SINE Alu 2 148 0 4 1619 30 0 0 0 chr4 135634508 135634538 -19995582 + AT_rich Low_complexity Low_complexity 1 30 0 4 1619 357 24 0 0 chr4 135634631 135634673 -19995447 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1619 319 289 3 33 chr4 135634797 135634915 -19995205 + PB1D7 SINE Alu 2 114 -6 4 1619 243 294 216 18 chr4 135634951 135635062 -19995058 + B1F SINE Alu 2 134 -15 4 1619 372 94 0 0 chr4 135635068 135635121 -19994999 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1619 195 139 0 0 chr4 135635144 135635180 -19994940 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1619 1006 59 7 0 chr4 135635193 135635328 -19994792 - B1_Mus1 SINE Alu 0 148 13 4 1619 328 221 114 2 chr4 135635489 135635593 -19994527 + MIRc SINE MIR 17 129 -133 4 1619 376 225 157 79 chr4 135635916 135636056 -19994064 - RSINE1 SINE B4 -6 159 9 4 1619 394 123 0 76 chr4 135636110 135636189 -19993931 + ID_B1 SINE B4 130 202 -22 4 1619 294 232 41 31 chr4 135636189 135636208 -19993912 + B1F SINE Alu 49 147 -2 4 1619 288 219 0 15 chr4 135636224 135636289 -19993831 + B1_Mur1 SINE Alu 85 148 -1 4 1619 333 0 0 0 chr4 135636565 135636602 -19993518 + (GGA)n Simple_repeat Simple_repeat 1 37 0 4 1619 836 292 104 11 chr4 135636865 135637212 -19992908 - MTEa LTR MaLR 0 379 1 4 1619 235 295 18 28 chr4 135637436 135637545 -19992575 - MER5A1 DNA MER1_type -49 117 9 4 1619 353 250 0 48 chr4 135638233 135638338 -19991782 + PB1D7 SINE Alu 3 102 -18 4 1619 438 188 158 0 chr4 135638364 135638465 -19991655 - B1_Mur3 SINE Alu -12 137 21 4 1619 540 279 13 20 chr4 135638508 135638579 -19991541 + ID SINE ID 9 78 -146 4 1619 293 294 66 38 chr4 135638579 135638685 -19991435 + PB1D10 SINE Alu 1 109 -8 4 1619 975 154 53 53 chr4 135638704 135638910 -19991210 + B3 SINE B2 2 207 -9 4 1619 458 246 42 34 chr4 135638938 135639056 -19991064 + ID_B1 SINE B4 78 196 -28 4 1619 21 0 0 0 chr4 135639539 135639560 -19990560 + GC_rich Low_complexity Low_complexity 1 21 0 4 1619 222 254 0 0 chr4 135639627 135639682 -19990438 + G-rich Low_complexity Low_complexity 1 55 0 4 1619 410 280 53 77 chr4 135639815 135639985 -19990135 - MLT1K LTR MaLR -2 593 428 4 1619 437 186 57 29 chr4 135640032 135640137 -19989983 - B1_Mur1 SINE Alu -1 148 41 4 1619 994 78 7 14 chr4 135640193 135640337 -19989783 - B1_Mus1 SINE Alu -4 144 2 4 1619 533 264 28 7 chr4 135640658 135640803 -19989317 - RSINE1 SINE B4 -17 148 1 4 1619 243 228 0 66 chr4 135640901 135640962 -19989158 - MLT1K LTR MaLR -318 277 221 4 1619 250 196 0 19 chr4 135641156 135641208 -19988912 + PB1 SINE Alu 77 127 0 4 1619 1201 41 0 0 chr4 135641213 135641359 -19988761 + B1_Mus2 SINE Alu 1 146 -1 4 1619 513 188 10 0 chr4 135642230 135642326 -19987794 + RSINE1 SINE B4 3 99 -66 4 1619 1154 54 0 0 chr4 135642326 135642473 -19987647 + B1_Mus2 SINE Alu 1 147 0 4 1619 411 308 43 62 chr4 135642765 135642976 -19987144 + MIR SINE MIR 5 211 -51 4 1619 441 36 0 0 chr4 135643013 135643068 -19987052 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1619 603 148 120 24 chr4 135643070 135643195 -19986925 - B1_Mur4 SINE Alu -1 149 13 4 1619 364 253 46 0 chr4 135643193 135643280 -19986840 + B4 SINE B4 136 226 -66 4 1619 533 242 66 13 chr4 135643280 135643431 -19986689 + RSINE1 SINE B4 2 160 -5 4 1619 697 184 4 4 chr4 135643688 135643930 -19986190 + (TCCA)n Simple_repeat Simple_repeat 1 242 0 4 1619 939 162 0 0 chr4 135643950 135644222 -19985898 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 4 1619 899 223 15 10 chr4 135645585 135645789 -19984331 - ID_B1 SINE B4 -17 207 3 4 1619 229 314 49 45 chr4 135645800 135645971 -19984149 - MIR SINE MIR -43 219 55 4 1619 282 217 44 78 chr4 135645988 135646078 -19984042 + MIRb SINE MIR 87 173 -95 4 1619 234 329 110 1 chr4 135646493 135646632 -19983488 + MIRc SINE MIR 22 170 -38 4 1619 487 309 19 26 chr4 135646716 135646872 -19983248 + RSINE1 SINE B4 1 155 -10 4 1619 207 209 0 0 chr4 135646886 135646929 -19983191 + A-rich Low_complexity Low_complexity 1 43 0 4 1619 1177 114 11 5 chr4 135646934 135647119 -19983001 + B2_Mm1t SINE B2 2 187 -6 4 1619 647 132 0 66 chr4 135647134 135647256 -19982864 + B1_Mur4 SINE Alu 35 148 -2 4 1619 799 274 29 5 chr4 135647789 135647998 -19982122 - B3 SINE B2 0 216 3 4 1619 450 162 256 0 chr4 135648000 135648117 -19982003 - B1_Mur1 SINE Alu 0 149 3 4 1619 1337 75 21 5 chr4 135648138 135648327 -19981793 - B2_Mm2 SINE B2 -1 194 3 4 1619 1155 49 0 0 chr4 135648360 135648503 -19981617 - B1_Mus2 SINE Alu -4 143 1 4 1619 512 198 244 19 chr4 135648529 135648689 -19981431 - B3A SINE B2 -1 197 2 4 1619 454 152 13 0 chr4 135648838 135648917 -19981203 - B3 SINE B2 -136 80 1 4 1619 245 248 58 88 chr4 135648965 135649102 -19981018 - B4 SINE B4 -119 173 41 4 1619 805 55 0 35 chr4 135649181 135649295 -19980825 - B1_Mus1 SINE Alu 0 148 39 4 1619 398 292 36 7 chr4 135649305 135649443 -19980677 - B1F1 SINE Alu -7 142 1 4 1619 210 287 85 47 chr4 135649458 135649564 -19980556 - L2c LINE L2 -19 3368 3259 4 1619 269 254 45 0 chr4 135649657 135649724 -19980396 - PB1D7 SINE Alu -27 93 24 4 1619 712 201 20 14 chr4 135649852 135649998 -19980122 + B1_Mur4 SINE Alu 4 150 0 5 1619 844 111 74 0 chr4 135650099 135650234 -19979886 + B1_Mus1 SINE Alu 2 146 -2 5 1619 230 175 0 45 chr4 135650235 135650301 -19979819 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 5 1619 184 238 48 0 chr4 135651232 135651274 -19978846 - MIRm SINE MIR -215 61 18 5 1619 317 253 13 0 chr4 135652351 135652430 -19977690 + ID4_ SINE ID 2 81 -2 5 1619 189 0 0 0 chr4 135652872 135652893 -19977227 + (CAG)n Simple_repeat Simple_repeat 3 23 0 5 1619 849 129 14 21 chr4 135652893 135653024 -19977096 + B1_Mus1 SINE Alu 16 146 -2 5 1619 27 0 0 0 chr4 135653031 135653058 -19977062 + AT_rich Low_complexity Low_complexity 1 27 0 5 1619 581 289 0 0 chr4 135653067 135653202 -19976918 - RSINE1 SINE B4 -13 152 18 5 1619 242 335 116 19 chr4 135653244 135653451 -19976669 - MLT1C LTR MaLR -128 339 113 5 1619 794 125 19 13 chr4 135653451 135653605 -19976515 + CT-rich Low_complexity Low_complexity 2 156 0 5 1619 360 164 40 27 chr4 135653607 135653682 -19976438 - ID_B1 SINE B4 0 224 149 5 1619 244 189 321 28 chr4 135653682 135653715 -19976405 - B1F2 SINE Alu 0 148 9 5 1619 334 134 173 26 chr4 135653716 135653825 -19976295 - B2_Mm2 SINE B2 -8 187 47 5 1619 1258 73 22 6 chr4 135653857 135654035 -19976085 - B2_Mm2 SINE B2 -14 181 1 5 1619 359 189 95 0 chr4 135654047 135654121 -19975999 - ID SINE ID -141 83 3 5 1619 359 254 39 47 chr4 135654121 135654244 -19975876 - MLT1C LTR MaLR -344 123 2 5 1619 983 216 0 40 chr4 135654844 135655066 -19975054 - B3 SINE B2 -3 213 1 5 1619 1214 73 5 59 chr4 135655084 135655107 -19975013 - B2_Mm2 SINE B2 0 195 176 5 1619 1191 41 0 7 chr4 135655107 135655254 -19974866 - B1_Mm SINE Alu -1 146 1 5 1619 1214 73 5 59 chr4 135655254 135655434 -19974686 - B2_Mm2 SINE B2 -20 175 3 5 1619 1191 48 0 0 chr4 135655444 135655591 -19974529 - B1_Mus2 SINE Alu 0 147 1 5 1619 303 257 92 7 chr4 135655923 135656069 -19974051 + MIR3 SINE MIR 11 177 -99 5 1619 286 244 68 23 chr4 135656251 135656339 -19973781 - MIR3 SINE MIR -113 163 72 5 1619 443 231 113 64 chr4 135657024 135657224 -19972896 + MTE2a LTR MaLR 1 218 -161 5 1619 984 61 0 0 chr4 135657216 135657348 -19972772 - B1_Mur2 SINE Alu -6 143 12 5 1619 230 241 37 37 chr4 135657347 135657429 -19972691 + MTE2a LTR MaLR 202 283 -96 5 1619 456 225 67 85 chr4 135657348 135657371 -19972749 - B4 SINE B4 -63 186 68 5 1619 267 54 0 0 chr4 135657676 135657713 -19972407 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 5 1619 1398 64 27 0 chr4 135657893 135658080 -19972040 + B2_Mm1t SINE B2 2 193 0 5 1619 358 258 40 30 chr4 135658093 135658193 -19971927 + MT2B LTR ERVL 157 257 -344 5 1619 583 165 94 17 chr4 135658110 135658227 -19971893 + B1_Mur2 SINE Alu 11 136 -13 5 1619 775 63 0 35 chr4 135658226 135658237 -19971883 - B1_Mus2 SINE Alu 0 147 140 5 1619 198 0 0 0 chr4 135658237 135658259 -19971861 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1619 775 63 0 35 chr4 135658259 135658362 -19971758 - B1_Mus2 SINE Alu -8 139 37 5 1619 258 210 32 16 chr4 135658309 135658372 -19971748 - 4.5SRNA scRNA scRNA -8 86 23 5 1619 341 212 0 70 chr4 135659368 135659454 -19970666 - PB1D9 SINE Alu -1 119 40 5 202 933 190 43 10 chr4 135659457 135659664 -19970456 - B3 SINE B2 -1 215 2 5 1620 463 239 62 0 chr4 135659693 135659806 -19970314 - MTEa LTR MaLR -251 128 9 5 1620 535 216 0 173 chr4 135660098 135660277 -19969843 - B1_Mur1 SINE Alu 0 149 2 5 1620 602 329 0 0 chr4 135660293 135660445 -19969675 - RSINE1 SINE B4 0 165 14 5 1620 372 224 118 0 chr4 135661540 135661625 -19968495 - B1_Mur3 SINE Alu -54 95 1 5 1620 296 292 0 0 chr4 135661564 135661636 -19968484 - B4 SINE B4 -146 146 75 5 1620 207 184 40 20 chr4 135661796 135661846 -19968274 + GA-rich Low_complexity Low_complexity 1 51 0 5 1620 261 304 0 14 chr4 135662060 135662130 -19967990 - L2b LINE L2 -17 3358 3290 5 1620 575 214 35 84 chr4 135662130 135662322 -19967798 - MLT1A1 LTR MaLR -16 489 252 5 1620 324 0 0 0 chr4 135662322 135662358 -19967762 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1620 1161 61 0 0 chr4 135662358 135662505 -19967615 - B1_Mus2 SINE Alu 0 147 1 5 1620 349 237 40 88 chr4 135662557 135662682 -19967438 - B4 SINE B4 -1 291 173 5 1620 375 282 45 15 chr4 135662703 135662836 -19967284 - MLT1A1 LTR MaLR -269 139 3 5 1620 201 74 0 0 chr4 135663657 135663684 -19966436 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1620 1050 198 25 10 chr4 135663687 135663886 -19966234 - B3 SINE B2 0 216 15 5 1620 243 0 0 0 chr4 135663987 135664014 -19966106 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1620 1110 68 0 7 chr4 135664018 135664165 -19965955 - B1_Mm SINE Alu 0 147 2 5 1620 25 51 0 0 chr4 135664179 135664218 -19965902 + AT_rich Low_complexity Low_complexity 1 39 0 5 1620 475 289 74 8 chr4 135664272 135664437 -19965683 - B3A SINE B2 -30 186 8 5 1620 1067 49 14 7 chr4 135664493 135664638 -19965482 - B1_Mm SINE Alu -1 146 1 5 1620 234 152 0 0 chr4 135664874 135664933 -19965187 + GA-rich Low_complexity Low_complexity 4 62 0 5 1620 683 80 0 10 chr4 135664935 135665030 -19965090 + B1_Mus2 SINE Alu 42 136 -11 5 1620 195 69 0 0 chr4 135665030 135665059 -19965061 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 5 1620 379 242 99 25 chr4 135665497 135665658 -19964462 - MIR3 SINE MIR -24 184 12 5 1620 258 32 0 0 chr4 135665669 135665700 -19964420 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1620 668 282 85 0 chr4 135665821 135666009 -19964111 - ID_B1 SINE B4 -11 213 10 5 1620 208 356 45 11 chr4 135666950 135667038 -19963082 - MIRb SINE MIR -93 175 85 5 1620 199 284 54 0 chr4 135667174 135667248 -19962872 - L3 LINE CR1 -1649 2840 2763 5 1620 1019 116 0 0 chr4 135667564 135667710 -19962410 + B1_Mus2 SINE Alu 2 147 0 5 1620 256 254 28 14 chr4 135667723 135667795 -19962325 + GA-rich Low_complexity Low_complexity 4 76 0 5 1620 940 122 14 7 chr4 135667889 135668037 -19962083 - B1_Mur3 SINE Alu 0 149 1 5 1620 523 311 86 97 chr4 135668822 135669018 -19961102 + B4A SINE B4 14 230 -62 5 1620 928 238 10 0 chr4 135669018 135669220 -19960900 + B3 SINE B2 1 204 -12 5 1620 523 311 86 97 chr4 135669220 135669250 -19960870 + B4A SINE B4 231 245 -47 5 1620 1433 68 5 0 chr4 135669250 135669442 -19960678 + B2_Mm1a SINE B2 1 193 0 5 1620 523 311 86 97 chr4 135669442 135669492 -19960628 + B4A SINE B4 246 287 -5 5 1620 767 21 10 0 chr4 135669497 135669594 -19960526 + (CA)n Simple_repeat Simple_repeat 2 99 0 5 1620 538 243 0 26 chr4 135669611 135669725 -19960395 + PB1D7 SINE Alu 10 120 0 5 1620 25 0 0 0 chr4 135669732 135669757 -19960363 + AT_rich Low_complexity Low_complexity 1 25 0 5 1620 405 0 0 0 chr4 135669845 135669890 -19960230 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1620 297 0 0 0 chr4 135669891 135669924 -19960196 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1620 221 125 0 40 chr4 135669965 135670015 -19960105 + T-rich Low_complexity Low_complexity 2 49 0 5 1620 1167 35 14 0 chr4 135670018 135670163 -19959957 - B1_Mus1 SINE Alu 0 148 2 5 1620 830 127 60 0 chr4 135670172 135670306 -19959814 - B1_Mur3 SINE Alu -7 142 1 5 1620 543 218 0 35 chr4 135670310 135670424 -19959696 + B3A SINE B2 35 144 -54 5 1620 434 108 14 0 chr4 135670427 135670501 -19959619 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1620 589 222 0 17 chr4 135670502 135670621 -19959499 - B1_Mur3 SINE Alu -32 117 1 5 1620 405 0 0 0 chr4 135670639 135670684 -19959436 + (TTA)n Simple_repeat Simple_repeat 3 47 0 5 1620 354 242 30 0 chr4 135670694 135670793 -19959327 - B1F SINE Alu -33 116 15 5 1620 270 307 26 26 chr4 135670793 135670811 -19959309 - ID_B1 SINE B4 -30 194 78 5 1620 318 315 142 51 chr4 135670861 135671135 -19958985 + MER74B LTR ERVL 182 480 -142 5 1620 845 141 0 14 chr4 135671454 135671598 -19958522 - B1_Mus2 SINE Alu -1 146 5 5 1620 729 178 0 0 chr4 135671639 135671768 -19958352 + B3 SINE B2 82 210 -6 5 1620 608 329 66 26 chr4 135672233 135672461 -19957659 + MTE2b LTR MaLR 1 237 -142 5 1620 329 159 48 0 chr4 135672479 135672542 -19957578 + MTE2b LTR MaLR 310 375 -4 5 1620 295 309 9 26 chr4 135672700 135672813 -19957307 - PB1D10 SINE Alu 0 117 7 5 1620 257 235 0 60 chr4 135673501 135673577 -19956543 + MIR SINE MIR 81 154 -114 5 1620 256 50 0 0 chr4 135673588 135673628 -19956492 + B1_Mur4 SINE Alu 111 150 0 5 1620 393 75 0 0 chr4 135673629 135673682 -19956438 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1620 286 347 77 30 chr4 135673685 135673982 -19956138 + Lx8 LINE L1 7153 7463 -10 5 1620 27 0 0 0 chr4 135673983 135674010 -19956110 + AT_rich Low_complexity Low_complexity 1 27 0 5 1620 922 98 41 20 chr4 135674012 135674148 -19955972 + B1_Mur4 SINE Alu 2 143 -7 5 1620 309 51 0 0 chr4 135674148 135674187 -19955933 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1620 414 0 0 0 chr4 135674316 135674362 -19955758 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 1620 693 265 55 0 chr4 135674362 135674537 -19955583 + ID_B1 SINE B4 32 216 -8 5 1620 183 139 0 0 chr4 135674859 135674895 -19955225 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 5 1620 691 158 0 38 chr4 135674895 135675027 -19955093 - B1_Mur3 SINE Alu -21 128 2 5 1620 340 283 54 74 chr4 135675027 135675063 -19955057 - B4 SINE B4 -207 85 53 5 1620 532 250 48 8 chr4 135675589 135675714 -19954406 - B3 SINE B2 -86 130 1 5 1620 983 90 277 0 chr4 135676493 135676670 -19953450 + URR1A DNA MER1_type 1 226 0 5 1620 285 29 0 0 chr4 135677028 135677062 -19953058 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 5 1620 613 336 60 46 chr4 135677139 135677420 -19952700 + B4A SINE B4 8 292 0 5 1620 258 105 0 0 chr4 135677453 135677491 -19952629 + (CATA)n Simple_repeat Simple_repeat 4 41 0 6 1620 273 296 25 34 chr4 135677496 135677615 -19952505 + MIRb SINE MIR 64 181 -87 6 1620 275 329 51 45 chr4 135677883 135678039 -19952081 + B4A SINE B4 18 174 -118 6 1620 500 217 28 19 chr4 135677960 135678068 -19952052 + PB1D7 SINE Alu 11 119 -1 6 1620 809 204 0 0 chr4 135678329 135678466 -19951654 - B1F2 SINE Alu -7 142 6 6 1620 461 282 32 96 chr4 135678466 135678482 -19951638 - B4 SINE B4 -69 219 77 6 1620 183 162 0 26 chr4 135678505 135678543 -19951577 + L2a LINE L2 3384 3420 -6 6 1620 271 113 38 0 chr4 135678545 135678598 -19951522 + (CACCAT)n Simple_repeat Simple_repeat 5 59 0 6 1620 244 311 13 13 chr4 135678599 135678674 -19951446 - ID2 SINE ID -7 76 2 6 1620 180 77 0 0 chr4 135678678 135678704 -19951416 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 6 1620 445 76 43 11 chr4 135679230 135679323 -19950797 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1620 266 318 104 22 chr4 135679529 135679664 -19950456 - MIR3 SINE MIR -30 178 33 6 1620 529 281 51 28 chr4 135679874 135680050 -19950070 + MER20 DNA MER1_type 34 213 -6 6 1620 260 381 19 13 chr4 135680056 135680213 -19949907 + MIRb SINE MIR 99 256 -12 6 1620 850 115 24 19 chr4 135680215 135680689 -19949431 + (CA)n Simple_repeat Simple_repeat 1 475 0 6 1620 684 134 103 15 chr4 135680704 135680840 -19949280 + B1_Mur4 SINE Alu 1 148 -2 6 1620 603 220 8 8 chr4 135680865 135680998 -19949122 + B1F1 SINE Alu 14 146 -3 6 1620 1071 43 43 0 chr4 135681296 135681436 -19948684 - B1_Mus1 SINE Alu -2 146 1 6 1620 2717 114 12 17 chr4 135681597 135682016 -19948104 - MTC LTR MaLR 0 421 5 6 1620 532 318 87 26 chr4 135682357 135682622 -19947498 + B4A SINE B4 12 292 0 6 1620 533 347 78 16 chr4 135682755 135683077 -19947043 - MLT1D LTR MaLR 0 505 164 6 1620 277 43 21 21 chr4 135683133 135683181 -19946939 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1620 363 123 0 0 chr4 135683186 135683243 -19946877 - B1_Mus1 SINE Alu -88 60 4 6 1620 355 236 61 35 chr4 135683243 135683300 -19946820 - B4 SINE B4 -148 144 28 6 1620 310 408 22 0 chr4 135683368 135683552 -19946568 - MER102c DNA MER1_type -93 238 51 6 1620 1033 225 41 51 chr4 135684091 135684386 -19945734 - B4A SINE B4 0 292 1 6 1620 256 229 29 0 chr4 135684413 135684483 -19945637 - ID4 SINE ID -10 73 2 6 1620 1069 37 0 0 chr4 135684544 135684680 -19945440 - B1_Mus1 SINE Alu 0 148 13 6 1620 934 77 0 0 chr4 135684683 135684813 -19945307 - B1_Mus2 SINE Alu -1 146 17 6 1620 1072 63 28 0 chr4 135684910 135685053 -19945067 + B1_Mus1 SINE Alu 2 148 0 6 1620 400 314 25 0 chr4 135685383 135685501 -19944619 + MIR SINE MIR 100 220 -42 6 1620 383 235 175 32 chr4 135685525 135685679 -19944441 - MTE2b LTR MaLR 0 379 204 6 1620 423 0 0 0 chr4 135685801 135685848 -19944272 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1620 423 0 0 0 chr4 135685848 135685894 -19944226 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1620 1022 192 21 0 chr4 135685898 135686085 -19944035 - B3 SINE B2 -25 191 1 6 1620 333 274 37 20 chr4 135686172 135686298 -19943822 + B1F SINE Alu 3 129 -20 6 1620 463 236 140 13 chr4 135686756 135686906 -19943214 + ID_B1 SINE B4 56 224 0 6 1620 363 58 0 0 chr4 135686906 135686933 -19943187 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1620 1143 54 7 0 chr4 135686933 135687080 -19943040 + B1_Mus1 SINE Alu 1 148 0 6 1620 363 58 0 0 chr4 135687080 135687104 -19943016 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1620 228 135 0 0 chr4 135687283 135687320 -19942800 + (TCC)n Simple_repeat Simple_repeat 1 37 0 6 1620 1409 237 59 82 chr4 135687454 135688043 -19942077 - L1MB7 LINE L1 -13 6171 5596 6 1620 213 307 175 0 chr4 135688073 135688099 -19942021 - RSINE1 SINE B4 -3 162 2 6 1620 478 220 27 18 chr4 135688099 135688210 -19941910 - B3 SINE B2 -104 112 1 6 1620 260 133 0 22 chr4 135688422 135688468 -19941652 - ID_B1 SINE B4 0 224 180 6 1620 193 229 0 52 chr4 135688615 135688730 -19941390 + CT-rich Low_complexity Low_complexity 3 111 0 6 1620 330 226 110 0 chr4 135688732 135688823 -19941297 - ID4 SINE ID -49 103 5 6 1620 241 287 118 35 chr4 135689090 135689260 -19940860 + MER33 DNA MER1_type 3 186 -138 6 1620 509 179 178 8 chr4 135689314 135689432 -19940688 - ID_B1 SINE B4 0 224 87 6 1620 23 0 0 0 chr4 135689532 135689555 -19940565 + GC_rich Low_complexity Low_complexity 1 23 0 6 1620 277 189 0 42 chr4 135689561 135689633 -19940487 + MER33 DNA MER1_type 251 319 -5 6 1620 331 265 0 0 chr4 135689645 135689713 -19940407 - RSINE1 SINE B4 -29 136 69 6 1620 374 279 165 25 chr4 135689798 135689956 -19940164 - MIRb SINE MIR -83 185 6 6 1620 22 0 0 0 chr4 135691001 135691023 -19939097 + GC_rich Low_complexity Low_complexity 1 22 0 6 1620 439 261 0 9 chr4 135691973 135692085 -19938035 + PB1D10 SINE Alu 1 111 -6 6 1620 405 283 8 24 chr4 135692718 135692841 -19937279 + ID_B1 SINE B4 73 193 -31 6 1620 561 229 13 97 chr4 135692731 135692886 -19937234 + B1F2 SINE Alu 5 146 -3 6 1620 261 209 0 0 chr4 135692975 135693042 -19937078 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1620 294 316 11 0 chr4 135693065 135693263 -19936857 + (TG)n Simple_repeat Simple_repeat 1 200 0 6 1620 290 156 16 0 chr4 135693346 135693410 -19936710 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1620 421 230 40 0 chr4 135693410 135693510 -19936610 + U6 snRNA snRNA 1 104 -3 6 1620 345 350 14 35 chr4 135693539 135693684 -19936436 - RSINE1 SINE B4 0 165 24 6 1620 224 154 0 0 chr4 135693712 135693751 -19936369 - B1_Mur4 SINE Alu -84 66 28 6 1620 241 214 0 18 chr4 135693717 135693774 -19936346 - B1F2 SINE Alu -89 60 5 6 1620 379 287 0 11 chr4 135694297 135694392 -19935728 + RSINE1 SINE B4 2 95 -70 6 1620 201 333 27 45 chr4 135694515 135694625 -19935495 + MIRb SINE MIR 49 156 -112 6 1620 416 274 9 17 chr4 135694625 135694740 -19935380 + PB1D10 SINE Alu 1 114 -3 6 1620 248 267 42 58 chr4 135694757 135694898 -19935222 + ID4 SINE ID 1 134 -18 6 1620 386 299 34 14 chr4 135695463 135695609 -19934511 + RSINE1 SINE B4 3 151 -14 6 1620 632 126 74 16 chr4 135697242 135697363 -19932757 - B1_Mur2 SINE Alu -1 148 21 6 1620 23 33 0 0 chr4 135697363 135697393 -19932727 + AT_rich Low_complexity Low_complexity 1 30 0 6 1620 715 123 84 8 chr4 135697399 135697530 -19932590 + B1_Mur3 SINE Alu 1 141 -8 6 1620 249 33 0 0 chr4 135697530 135697560 -19932560 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 6 1620 388 315 35 14 chr4 135697578 135697723 -19932397 - MIRb SINE MIR -98 170 23 6 1620 236 242 24 114 chr4 135698228 135698325 -19931795 - MIR SINE MIR -168 108 19 6 1620 412 235 29 126 chr4 135701744 135701902 -19928218 + B1_Mur2 SINE Alu 5 149 0 6 1620 273 75 0 0 chr4 135703235 135703275 -19926845 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1620 203 278 19 0 chr4 135703452 135703506 -19926614 - MIRb SINE MIR -165 103 49 6 1620 205 183 0 62 chr4 135703797 135703861 -19926259 + C-rich Low_complexity Low_complexity 2 61 0 6 1620 573 121 8 16 chr4 135704109 135704235 -19925885 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 1620 276 30 0 0 chr4 135704267 135704300 -19925820 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1620 1212 94 66 0 chr4 135705238 135705419 -19924701 + B2_Mm2 SINE B2 2 194 -1 6 1620 332 263 32 0 chr4 135705419 135705512 -19924608 + PB1D10 SINE Alu 9 110 -7 6 1620 1070 73 0 0 chr4 135705520 135705657 -19924463 + B1_Mus1 SINE Alu 1 137 -11 6 1620 469 0 33 0 chr4 135705657 135705718 -19924402 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 6 1620 256 239 216 94 chr4 135705723 135705894 -19924226 + B3A SINE B2 1 192 -6 6 1620 927 143 199 6 chr4 135705996 135706172 -19923948 + B3 SINE B2 1 210 -6 6 1620 581 168 0 0 chr4 135706245 135706346 -19923774 + B1_Mus2 SINE Alu 47 147 0 6 1620 862 279 8 34 chr4 135707504 135707738 -19922382 + B4A SINE B4 64 291 -1 6 1620 986 53 15 8 chr4 135707790 135707923 -19922197 + B1_Mus1 SINE Alu 2 135 -13 6 1620 525 58 0 0 chr4 135707924 135707993 -19922127 + (GAA)n Simple_repeat Simple_repeat 1 69 0 6 1620 432 0 0 0 chr4 135707993 135708041 -19922079 + (CAA)n Simple_repeat Simple_repeat 1 48 0 6 1620 209 279 14 29 chr4 135708707 135708777 -19921343 + C-rich Low_complexity Low_complexity 6 74 0 6 1620 374 271 48 48 chr4 135708797 135708845 -19921275 - ID_B1 SINE B4 -21 203 158 6 1620 1195 143 23 19 chr4 135708845 135709059 -19921061 - B3 SINE B2 0 216 2 6 1620 374 271 48 48 chr4 135709059 135709134 -19920986 - ID_B1 SINE B4 -67 157 80 6 1620 1006 123 0 12 chr4 135709136 135709147 -19920973 + (TCC)n Simple_repeat Simple_repeat 3 13 0 6 1620 1367 89 16 0 chr4 135709147 135709338 -19920782 - B2_Mm2 SINE B2 0 195 2 6 1620 1006 123 0 12 chr4 135709338 135709499 -19920621 + (TCC)n Simple_repeat Simple_repeat 2 161 0 6 1620 387 228 0 0 chr4 135709511 135709603 -19920517 + CT-rich Low_complexity Low_complexity 2 93 0 6 1620 200 111 0 27 chr4 135709601 135709638 -19920482 + (CACCAT)n Simple_repeat Simple_repeat 6 41 0 6 1620 837 218 0 13 chr4 135709653 135709811 -19920309 - RSINE1 SINE B4 -7 158 3 6 1620 817 162 0 39 chr4 135709965 135710119 -19920001 - B1_Mur4 SINE Alu -1 149 2 6 1620 327 306 101 13 chr4 135710160 135710309 -19919811 + MIR SINE MIR 63 224 -38 6 1620 321 26 0 0 chr4 135710309 135710347 -19919773 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 7 1620 186 303 26 0 chr4 135710693 135710769 -19919351 + MIRc SINE MIR 61 138 -130 7 1620 334 293 0 0 chr4 135710807 135710889 -19919231 - ID4_ SINE ID -1 82 1 7 1620 345 140 0 0 chr4 135711237 135711294 -19918826 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1620 262 246 0 15 chr4 135711351 135711417 -19918703 - ID4 SINE ID -14 69 5 7 1620 354 287 43 38 chr4 135711453 135711599 -19918521 + PB1D7 SINE Alu 4 148 -1 7 1620 410 276 78 16 chr4 135711884 135712013 -19918107 + RSINE1 SINE B4 25 161 -4 7 1620 747 182 29 0 chr4 135712095 135712232 -19917888 - B1F SINE Alu 0 149 9 7 1620 482 289 12 50 chr4 135712232 135712255 -19917865 - ID_B1 SINE B4 -1 223 70 7 1620 765 269 61 0 chr4 135712281 135712478 -19917642 - ID_B1 SINE B4 -5 219 11 7 1620 891 169 8 16 chr4 135713066 135713318 -19916802 + GA-rich Low_complexity Low_complexity 1 250 0 7 1620 478 204 134 104 chr4 135713328 135713492 -19916628 + B3A SINE B2 6 174 -24 7 1620 708 207 36 0 chr4 135713501 135713641 -19916479 + B1_Mur1 SINE Alu 5 149 0 7 1620 343 270 11 0 chr4 135713661 135713750 -19916370 + B4A SINE B4 2 91 -201 7 1620 825 145 256 0 chr4 135713754 135713926 -19916194 + B3 SINE B2 1 216 0 7 1620 1281 71 60 0 chr4 135713931 135714115 -19916005 + B2_Mm2 SINE B2 1 195 0 7 1620 1101 75 7 0 chr4 135714115 135714261 -19915859 + B1_Mus1 SINE Alu 1 148 0 7 1620 474 18 0 0 chr4 135714276 135714331 -19915789 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1620 718 211 99 5 chr4 135714513 135714704 -19915416 + B3 SINE B2 2 210 -6 7 1620 993 74 20 7 chr4 135714734 135714883 -19915237 + B2_Mm2 SINE B2 36 186 -9 7 1620 341 222 0 0 chr4 135714878 135714950 -19915170 + B4A SINE B4 220 291 -1 7 1620 456 235 0 0 chr4 135714951 135715087 -19915033 + (CA)n Simple_repeat Simple_repeat 1 136 0 7 1620 248 104 44 15 chr4 135716990 135717058 -19913062 + T-rich Low_complexity Low_complexity 3 72 0 7 1620 1057 89 7 0 chr4 135717061 135717207 -19912913 - B1_Mus2 SINE Alu 0 147 1 7 1620 757 152 92 38 chr4 135717217 135717401 -19912719 - B2_Mm2 SINE B2 -1 194 1 7 1620 1125 63 0 0 chr4 135717702 135717845 -19912275 - B1_Mm SINE Alu -2 145 3 7 1620 1430 73 16 0 chr4 135717858 135718049 -19912071 - B2_Mm2 SINE B2 0 195 2 7 1620 238 327 26 26 chr4 135718156 135718269 -19911851 + PB1D10 SINE Alu 5 117 0 7 1620 536 278 0 53 chr4 135718267 135718419 -19911701 + ID_B1 SINE B4 81 224 0 7 1620 436 180 0 43 chr4 135718744 135718837 -19911283 - B1F SINE Alu -51 98 10 7 1620 1032 71 0 0 chr4 135718858 135718998 -19911122 - B1_Mm SINE Alu 0 147 8 7 1620 1112 58 0 0 chr4 135719026 135719164 -19910956 + B1_Mus1 SINE Alu 1 138 -10 7 1620 225 0 0 0 chr4 135719260 135719285 -19910835 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1620 326 301 65 7 chr4 135719844 135719980 -19910140 - L1MB7 LINE L1 -237 5943 5801 7 1620 684 149 66 8 chr4 135719997 135720119 -19910001 + B1_Mur4 SINE Alu 22 150 0 7 1620 285 299 19 97 chr4 135720140 135720257 -19909863 - L1MB7 LINE L1 -386 5793 5694 7 1620 359 214 144 10 chr4 135720257 135720361 -19909759 - PB1D9 SINE Alu -2 118 1 7 1620 285 296 20 96 chr4 135720361 135720404 -19909716 - L1MB7 LINE L1 -486 5693 5652 7 1620 1015 79 158 0 chr4 135720407 135720571 -19909549 - B2_Mm1t SINE B2 -2 191 2 7 1620 867 162 14 0 chr4 135720586 135720734 -19909386 - B1_Mur4 SINE Alu 0 150 1 7 1620 405 211 62 21 chr4 135720809 135720906 -19909214 - PB1D9 SINE Alu -9 111 11 7 1620 260 247 30 61 chr4 135720822 135720921 -19909199 - MT2B LTR ERVL -350 251 156 7 1620 559 297 29 5 chr4 135721014 135721224 -19908896 - L1MB7 LINE L1 -571 5609 5395 7 1620 373 268 0 89 chr4 135721292 135721415 -19908705 + RSINE1 SINE B4 54 165 0 7 1620 221 234 32 11 chr4 135721424 135721519 -19908601 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 1620 226 87 43 0 chr4 135721556 135721602 -19908518 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1620 242 333 49 35 chr4 135721602 135721745 -19908375 - MIRb SINE MIR -38 230 86 7 1620 1075 80 101 28 chr4 135721746 135721925 -19908195 + B2_Mm2 SINE B2 2 193 -2 7 1620 235 194 40 40 chr4 135722193 135722268 -19907852 + C-rich Low_complexity Low_complexity 5 79 0 7 1620 234 0 0 0 chr4 135722470 135722496 -19907624 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1620 822 102 312 19 chr4 135722512 135722672 -19907448 + B3 SINE B2 1 207 -9 7 1620 1289 20 0 0 chr4 135722697 135722836 -19907284 + B1_Mus1 SINE Alu 1 139 -9 7 1620 306 0 0 0 chr4 135722836 135722870 -19907250 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1620 324 0 0 0 chr4 135722932 135722968 -19907152 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1620 881 138 0 52 chr4 135722988 135723141 -19906979 + B1_Mur2 SINE Alu 5 149 0 7 1620 495 331 0 0 chr4 135723152 135723330 -19906790 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 1620 412 276 61 137 chr4 135723336 135723533 -19906587 - B3A SINE B2 -16 182 1 7 1620 399 243 48 68 chr4 135723533 135723710 -19906410 - RMER17D LTR ERVK -413 476 305 7 1620 423 290 65 0 chr4 135723713 135723837 -19906283 - B1F1 SINE Alu -17 132 1 7 1620 896 152 7 58 chr4 135723893 135724047 -19906073 - B1_Mus2 SINE Alu -1 146 1 7 1620 211 258 45 0 chr4 135724189 135724255 -19905865 + MIRc SINE MIR 79 147 -121 7 1620 506 16 16 0 chr4 135724289 135724352 -19905768 + (TATG)n Simple_repeat Simple_repeat 2 65 0 7 1620 450 204 71 0 chr4 135724359 135724457 -19905663 - ID_B1 SINE B4 -15 209 105 7 1620 613 196 218 12 chr4 135724551 135724716 -19905404 + B3 SINE B2 9 207 -9 7 1620 1294 141 21 72 chr4 135724831 135725068 -19905052 + URR1B DNA MER1_type 1 225 0 7 1620 652 78 0 0 chr4 135725169 135725271 -19904849 - L1_Mus3 LINE L1 -2 6636 6535 7 1620 863 138 27 27 chr4 135725274 135725423 -19904697 - B1_Mur2 SINE Alu 0 149 1 7 1620 687 194 47 0 chr4 135725423 135725552 -19904568 + B1_Mur1 SINE Alu 11 145 -4 7 1620 228 170 21 7 chr4 135726018 135726077 -19904043 + MIR SINE MIR 123 190 -78 7 1620 259 305 22 118 chr4 135726208 135726348 -19903772 - MIRc SINE MIR -130 138 7 7 1620 245 226 32 0 chr4 135726555 135726617 -19903503 - L2c LINE L2 -229 3158 3095 7 1620 186 43 0 0 chr4 135726626 135726649 -19903471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1620 744 164 75 0 chr4 135726650 135726784 -19903336 - B1_Mus1 SINE Alu -2 146 3 7 1620 1175 82 0 0 chr4 135727135 135727282 -19902838 + B1_Mus1 SINE Alu 2 148 0 7 1620 258 327 0 63 chr4 135727580 135727691 -19902429 + MIRb SINE MIR 162 265 -3 7 1620 26 0 0 0 chr4 135727801 135727827 -19902293 + AT_rich Low_complexity Low_complexity 1 26 0 7 1620 309 193 35 0 chr4 135728239 135728296 -19901824 + L1MEg LINE L1 1882 1940 -4144 7 1620 657 225 36 0 chr4 135729735 135729873 -19900247 - RSINE1 SINE B4 -21 144 2 7 1620 196 250 31 0 chr4 135730182 135730246 -19899874 - MIRc SINE MIR -93 175 110 7 1620 492 183 0 31 chr4 135731182 135731278 -19898842 - B1_Mus2 SINE Alu -25 122 30 7 1620 243 190 51 17 chr4 135731296 135731355 -19898765 - PB1 SINE Alu -5 122 62 7 1620 849 169 14 0 chr4 135731431 135731573 -19898547 + B1_Mur2 SINE Alu 1 144 -5 7 1620 22 0 0 0 chr4 135731620 135731642 -19898478 + AT_rich Low_complexity Low_complexity 1 22 0 7 1620 252 209 198 0 chr4 135732519 135732605 -19897515 + MIRb SINE MIR 35 137 -131 7 1620 276 288 134 24 chr4 135733387 135733551 -19896569 - MIRb SINE MIR -3 265 84 7 1620 225 0 0 0 chr4 135733692 135733717 -19896403 + (TGG)n Simple_repeat Simple_repeat 3 27 0 7 1620 257 222 42 54 chr4 135734629 135734715 -19895405 - MIRc SINE MIR -168 108 23 7 1620 1317 168 14 5 chr4 135734950 135735171 -19894949 + URR1B DNA MER1_type 1 223 -2 7 1620 269 283 111 0 chr4 135735796 135735895 -19894225 + MIR SINE MIR 11 120 -142 7 1620 488 223 39 0 chr4 135737688 135737791 -19892329 - RSINE1 SINE B4 0 165 59 7 1620 582 133 26 0 chr4 135737953 135738066 -19892054 + CT-rich Low_complexity Low_complexity 1 116 0 7 1620 845 92 0 65 chr4 135738066 135738205 -19891915 - B1_Mus1 SINE Alu -1 147 18 7 1620 374 156 91 0 chr4 135738217 135738294 -19891826 - B1_Mm SINE Alu 0 147 64 7 1620 544 244 17 8 chr4 135738306 135738426 -19891694 - RSINE1 SINE B4 0 165 45 7 1620 315 0 0 0 chr4 135738449 135738484 -19891636 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7 1620 1233 125 23 6 chr4 135738484 135738661 -19891459 - B2_Mm2 SINE B2 -14 181 2 7 1620 1181 69 0 0 chr4 135738795 135738940 -19891180 + B1_Mus2 SINE Alu 1 145 -2 7 1620 1334 101 32 0 chr4 135739587 135739775 -19890345 - B2_Mm2 SINE B2 0 195 2 7 1620 893 120 14 14 chr4 135739796 135739940 -19890180 - B1_Mur4 SINE Alu 0 150 7 7 1620 375 298 117 25 chr4 135739949 135740182 -19889938 - Lx8 LINE L1 -1600 5873 5609 7 1620 225 262 16 0 chr4 135740649 135740710 -19889410 - tRNA-Ala-GCY_ tRNA tRNA -10 65 4 7 1620 403 324 58 0 chr4 135740717 135740856 -19889264 - B1F SINE Alu -1 148 2 7 1620 228 67 0 0 chr4 135741019 135741049 -19889071 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 1620 706 262 19 43 chr4 135741073 135741284 -19888836 - B3 SINE B2 -10 206 1 7 1620 604 303 34 0 chr4 135741601 135741776 -19888344 - ID_B1 SINE B4 -41 183 3 7 1620 339 78 0 0 chr4 135742003 135742054 -19888066 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1620 214 311 50 28 chr4 135743091 135743215 -19886905 + MIR SINE MIR 86 219 -49 8 1620 619 262 92 5 chr4 135743515 135743699 -19886421 + B3 SINE B2 3 202 -14 8 1620 225 65 0 0 chr4 135743717 135743748 -19886372 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1620 857 162 13 33 chr4 135743786 135743939 -19886181 - B1_Mur4 SINE Alu 0 150 1 8 1620 327 253 84 0 chr4 135744088 135744171 -19885949 - B1_Mur3 SINE Alu -57 92 3 8 1620 745 279 88 0 chr4 135744180 135744384 -19885736 - ID_B1 SINE B4 0 224 3 8 1620 846 239 31 0 chr4 135744461 135744620 -19885500 - RSINE1 SINE B4 0 165 2 8 1620 248 353 63 3 chr4 135744834 135744997 -19885123 - MIRb SINE MIR -69 199 22 8 1620 692 229 66 118 chr4 135745196 135745227 -19884893 + B3 SINE B2 1 29 -187 8 1620 671 136 219 26 chr4 135745227 135745378 -19884742 - B2_Mm2 SINE B2 -15 180 1 8 1620 692 229 66 118 chr4 135745378 135745574 -19884546 + B3 SINE B2 30 216 0 8 1620 321 155 0 0 chr4 135745579 135745637 -19884483 + A-rich Low_complexity Low_complexity 4 61 0 8 1620 380 298 37 36 chr4 135745669 135745873 -19884247 - MIR SINE MIR -74 202 1 8 1620 241 277 12 0 chr4 135746282 135746365 -19883755 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1620 750 211 93 11 chr4 135746423 135746437 -19883683 - B3A SINE B2 -1 197 184 8 1620 282 106 0 0 chr4 135746437 135746484 -19883636 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1620 750 211 93 11 chr4 135746484 135746651 -19883469 - B3A SINE B2 -15 183 1 8 1620 220 274 54 14 chr4 135746766 135746840 -19883280 + MIR3 SINE MIR 117 193 -15 8 1620 322 296 19 58 chr4 135746894 135746998 -19883122 + PB1 SINE Alu 21 120 -7 8 1620 320 281 39 49 chr4 135747026 135747178 -19882942 + B1F SINE Alu 3 146 -3 8 1620 388 227 0 13 chr4 135747188 135747264 -19882856 + ID4_ SINE ID 2 76 -7 8 1620 492 48 0 0 chr4 135747271 135747334 -19882786 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1620 226 259 19 0 chr4 135747429 135747483 -19882637 - ID4 SINE ID -11 72 18 8 1620 288 0 0 0 chr4 135747487 135747519 -19882601 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1620 860 279 33 22 chr4 135747548 135747819 -19882301 - B4A SINE B4 -16 276 3 8 1620 257 307 40 0 chr4 135747846 135747921 -19882199 - B1F SINE Alu -70 79 2 8 1620 478 307 43 0 chr4 135747921 135748084 -19882036 - L1M4 LINE L1 -1079 5067 4898 8 1620 519 260 136 23 chr4 135748138 135748315 -19881805 - B3A SINE B2 0 198 2 8 1620 724 247 112 6 chr4 135750552 135750731 -19879389 + RMER30 DNA MER1_type 4 201 -1 8 1620 362 338 38 66 chr4 135752385 135752597 -19877523 - B4A SINE B4 -86 206 1 8 1620 385 267 100 0 chr4 135752652 135752772 -19877348 + ID_B1 SINE B4 93 224 0 8 1620 189 0 0 0 chr4 135752772 135752793 -19877327 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1620 227 191 0 0 chr4 135752863 135752910 -19877210 + L1M2 LINE L1 5203 5249 -894 8 1620 1500 38 5 65 chr4 135752917 135753116 -19877004 - B2_Mm2 SINE B2 -8 187 1 8 1620 681 170 360 0 chr4 135753155 135753308 -19876812 + B3 SINE B2 2 209 -7 8 1620 1043 152 104 10 chr4 135753323 135753516 -19876604 - B3 SINE B2 -5 211 1 8 1620 705 230 7 39 chr4 135753574 135753728 -19876392 + B1_Mur1 SINE Alu 1 149 0 8 1620 1030 123 7 0 chr4 135753745 135753891 -19876229 + B1_Mus2 SINE Alu 1 147 0 8 1620 406 178 218 0 chr4 135753989 135754090 -19876030 + RMER1B Other Other 45 167 -899 8 1620 701 149 30 0 chr4 135754115 135754249 -19875871 - B1_Mus2 SINE Alu -1 146 9 8 1620 361 320 64 0 chr4 135754341 135754497 -19875623 + L1M2 LINE L1 3657 3822 -2321 8 1620 218 164 36 0 chr4 135754641 135754696 -19875424 + A-rich Low_complexity Low_complexity 4 60 0 8 1620 1334 102 16 0 chr4 135755038 135755224 -19874896 + B2_Mm2 SINE B2 1 189 -6 8 1620 1515 68 16 0 chr4 135755226 135755416 -19874704 + B2_Mm2 SINE B2 2 194 -1 8 1620 301 175 15 45 chr4 135755542 135755608 -19874512 + RCHARR1 DNA MER1_type 329 392 -582 8 1620 358 201 90 0 chr4 135755777 135755869 -19874251 + PB1D10 SINE Alu 20 117 0 8 1620 252 299 0 0 chr4 135756047 135756114 -19874006 - MIRb SINE MIR -137 131 65 8 1620 226 233 15 77 chr4 135756250 135756315 -19873805 - ID4_ SINE ID 0 83 23 8 1620 210 286 18 0 chr4 135756265 135756321 -19873799 - ID SINE ID -150 74 18 8 1620 538 203 0 71 chr4 135756366 135756493 -19873627 - PB1D9 SINE Alu -1 119 2 8 1620 586 264 86 43 chr4 135756605 135756712 -19873408 - B3A SINE B2 -1 197 82 8 1620 3247 135 29 2 chr4 135756712 135757225 -19872895 + RLTR11A2 LTR ERVK 1 527 0 8 1620 586 264 86 43 chr4 135757225 135757303 -19872817 - B3A SINE B2 -117 81 4 8 1620 679 254 21 52 chr4 135757309 135757500 -19872620 - ID_B1 SINE B4 -5 219 35 8 1620 991 206 90 0 chr4 135757556 135757745 -19872375 + B3 SINE B2 2 207 -9 8 1620 1212 43 0 0 chr4 135757770 135757911 -19872209 + B1_Mus1 SINE Alu 2 142 -6 8 1620 261 0 0 0 chr4 135757913 135757942 -19872178 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 8 1620 186 43 0 0 chr4 135758030 135758053 -19872067 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1620 231 262 0 87 chr4 135758059 135758151 -19871969 - B4 SINE B4 -182 110 27 8 1620 615 177 9 9 chr4 135758161 135758275 -19871845 - B1_Mur1 SINE Alu 0 149 36 8 1620 242 186 0 0 chr4 135758580 135758623 -19871497 - MER91C DNA Tip100 -15 125 83 8 1620 1706 198 27 34 chr4 135758926 135759338 -19870782 + RMER17C LTR ERVK 2 410 0 8 1620 427 191 26 26 chr4 135759549 135759662 -19870458 - B3A SINE B2 -1 197 85 8 1620 180 448 0 0 chr4 135759952 135760039 -19870081 + MIRb SINE MIR 18 104 -164 8 1620 684 197 87 7 chr4 135760409 135760547 -19869573 + B1_Mur1 SINE Alu 1 149 0 8 1620 183 100 0 0 chr4 135760556 135760586 -19869534 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 8 1620 485 291 99 0 chr4 135760645 135760786 -19869334 + ID_B1 SINE B4 70 224 0 8 1620 530 250 14 81 chr4 135760799 135760947 -19869173 + RSINE1 SINE B4 28 165 0 8 1620 789 191 22 25 chr4 135761015 135761205 -19868915 + B3 SINE B2 1 197 -1 8 1620 203 368 0 36 chr4 135761214 135761324 -19868796 - L2a LINE L2 -210 3216 3111 8 1620 234 0 0 0 chr4 135761642 135761668 -19868452 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1620 239 182 0 98 chr4 135761824 135761885 -19868235 + PB1D9 SINE Alu 11 65 -55 8 1620 419 337 117 0 chr4 135763734 135763939 -19866181 - L1MC4 LINE L1 -5037 1178 950 8 1620 243 319 45 44 chr4 135764349 135764537 -19865583 - MIR3 SINE MIR -3 205 21 8 1620 270 81 0 0 chr4 135765287 135765324 -19864796 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1620 419 237 81 20 chr4 135765324 135765423 -19864697 - PB1D10 SINE Alu -9 108 4 8 1620 392 214 111 11 chr4 135765483 135765573 -19864547 - PB1D10 SINE Alu -8 109 11 8 1620 863 123 31 0 chr4 135765761 135765891 -19864229 + B1_Mur2 SINE Alu 5 138 -11 8 1620 387 56 0 0 chr4 135765891 135765945 -19864175 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1620 787 189 21 7 chr4 135767303 135767447 -19862673 + B1_Mur4 SINE Alu 3 148 -2 8 1620 290 132 19 0 chr4 135767448 135767501 -19862619 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 1620 235 370 12 0 chr4 135767608 135767689 -19862431 - ID4_ SINE ID -1 82 1 8 1620 595 180 6 11 chr4 135768021 135768201 -19861919 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1620 270 198 61 71 chr4 135768256 135768354 -19861766 - B1_Mur2 SINE Alu -3 146 50 8 1620 707 275 33 29 chr4 135768304 135768514 -19861606 - B4A SINE B4 -81 211 1 8 1620 399 285 24 16 chr4 135768545 135768670 -19861450 - B1F2 SINE Alu 0 149 24 8 1620 781 121 0 0 chr4 135768698 135768814 -19861306 + B1_Mus2 SINE Alu 1 116 -31 8 1620 729 237 47 10 chr4 135768814 135768873 -19861247 + B4A SINE B4 86 269 -23 8 1620 306 0 0 0 chr4 135768873 135768907 -19861213 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1620 729 237 47 10 chr4 135768907 135768919 -19861201 + B4A SINE B4 270 280 -12 8 1620 288 0 125 0 chr4 135769383 135769455 -19860665 + (GGGA)n Simple_repeat Simple_repeat 2 82 0 8 1620 299 270 7 125 chr4 135769969 135770039 -19860081 - B4A SINE B4 -4 288 224 8 1620 1227 77 129 0 chr4 135770039 135770127 -19859993 - B2_Mm1t SINE B2 0 193 106 8 1620 180 77 0 0 chr4 135770127 135770153 -19859967 + (CATTA)n Simple_repeat Simple_repeat 1 26 0 8 1620 1227 77 129 0 chr4 135770153 135770234 -19859886 - B2_Mm1t SINE B2 -88 105 3 8 1620 299 270 7 125 chr4 135770234 135770307 -19859813 - B4A SINE B4 -69 223 162 8 1620 528 217 60 9 chr4 135770430 135770551 -19859569 - ID_B1 SINE B4 -158 134 3 8 1620 239 363 152 5 chr4 135771074 135771265 -19858855 + MIRb SINE MIR 38 256 -12 8 1620 294 247 0 0 chr4 135771265 135771358 -19858762 + (TG)n Simple_repeat Simple_repeat 1 93 0 8 1620 413 261 18 9 chr4 135771536 135771648 -19858472 - PB1D7 SINE Alu -7 113 1 8 1620 1591 52 5 0 chr4 135771798 135771989 -19858131 - B2_Mm1t SINE B2 -1 192 1 8 1620 858 105 75 0 chr4 135772078 135772211 -19857909 - B1_Mus2 SINE Alu 0 147 5 8 1620 196 149 0 41 chr4 135772224 135772273 -19857847 + CT-rich Low_complexity Low_complexity 5 51 0 8 1620 239 216 0 38 chr4 135772280 135772333 -19857787 - ID4_ SINE ID -27 56 6 8 1620 665 143 191 0 chr4 135772352 135772478 -19857642 + B1_Mur4 SINE Alu 1 150 0 8 1620 329 216 27 0 chr4 135772487 135772561 -19857559 + B3A SINE B2 9 84 -114 8 1620 402 74 0 0 chr4 135772642 135772696 -19857424 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1620 290 332 198 0 chr4 135772795 135772982 -19857138 - L1MB7 LINE L1 -77 6107 5884 9 1620 317 309 0 0 chr4 135773164 135773261 -19856859 - MER53 DNA hAT -96 97 1 9 1620 212 203 101 0 chr4 135773262 135773331 -19856789 - MIR SINE MIR -179 83 8 9 1620 907 55 0 80 chr4 135773556 135773694 -19856426 + B1_Mus1 SINE Alu 22 148 0 9 1620 318 290 32 0 chr4 135773724 135773817 -19856303 - MIR SINE MIR -93 169 74 9 1620 680 293 155 8 chr4 135773984 135774235 -19855885 + B4A SINE B4 1 288 -4 9 1620 249 294 89 32 chr4 135774378 135774536 -19855584 - L2b LINE L2 -239 3136 2970 9 1620 236 294 81 40 chr4 135775326 135775481 -19854639 - MIRc SINE MIR -27 181 23 9 1620 461 245 9 56 chr4 135775619 135775727 -19854393 + PB1D7 SINE Alu 9 111 -9 9 1620 213 318 157 15 chr4 135775727 135775753 -19854367 + B4A SINE B4 94 246 -46 9 1620 185 83 0 27 chr4 135775759 135775796 -19854324 + (CGGGGG)n Simple_repeat Simple_repeat 3 38 0 9 1620 300 85 43 0 chr4 135775853 135775900 -19854220 + ID_B1 SINE B4 116 164 -60 9 1620 235 241 36 60 chr4 135775900 135775937 -19854183 + PB1D10 SINE Alu 35 116 -1 9 1620 441 76 0 0 chr4 135776870 135776936 -19853184 + (TC)n Simple_repeat Simple_repeat 2 67 0 9 1620 902 143 0 79 chr4 135776993 135777145 -19852975 - B1_Mur1 SINE Alu -9 140 1 9 1620 406 274 11 0 chr4 135777206 135777301 -19852819 - B4A SINE B4 -196 96 1 9 1620 302 356 83 0 chr4 135777307 135777439 -19852681 - B1F1 SINE Alu -6 143 1 9 1620 1120 176 85 0 chr4 135777466 135777665 -19852455 + B3 SINE B2 1 216 0 9 1620 398 320 27 126 chr4 135777777 135777999 -19852121 + B4 SINE B4 24 223 -69 9 1620 586 167 44 0 chr4 135777887 135778001 -19852119 + B1_Mus2 SINE Alu 29 147 0 9 1620 607 234 73 0 chr4 135778796 135778933 -19851187 + B1_Mus2 SINE Alu 1 147 0 9 1620 224 200 0 0 chr4 135778946 135778962 -19851158 + A-rich Low_complexity Low_complexity 1 16 0 9 1620 984 60 113 0 chr4 135778962 135779095 -19851025 + B1_Mus1 SINE Alu 1 148 0 9 1620 224 200 0 0 chr4 135779095 135779133 -19850987 + A-rich Low_complexity Low_complexity 17 54 0 9 1620 555 219 87 7 chr4 135779166 135779304 -19850816 - B1_Mur1 SINE Alu 0 149 1 9 1620 539 303 6 26 chr4 135779365 135779521 -19850599 - RSINE1 SINE B4 0 165 13 9 1620 186 43 0 0 chr4 135779565 135779588 -19850532 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 9 1620 441 0 0 0 chr4 135780139 135780188 -19849932 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1620 483 298 6 47 chr4 135780464 135780633 -19849487 - RSINE1 SINE B4 0 165 4 9 1620 792 66 211 16 chr4 135781395 135781518 -19848602 - B1_Mus1 SINE Alu -1 147 1 9 1620 1539 58 11 0 chr4 135781518 135781707 -19848413 - B2_Mm2 SINE B2 -2 193 2 9 1620 961 106 0 0 chr4 135781712 135781853 -19848267 - B1_Mus1 SINE Alu -2 146 6 9 1620 372 229 8 99 chr4 135781745 135781866 -19848254 - MT2B LTR ERVL -337 264 155 9 1620 573 247 106 53 chr4 135781868 135782056 -19848064 - B3A SINE B2 0 198 1 9 1620 1516 261 27 37 chr4 135782063 135782364 -19847756 - RCHARR1 DNA MER1_type -531 443 139 9 1620 1449 108 0 5 chr4 135782364 135782559 -19847561 + B2_Mm2 SINE B2 1 194 -1 9 1620 1516 261 27 37 chr4 135782559 135782666 -19847454 - RCHARR1 DNA MER1_type -836 138 39 9 1620 1056 109 0 0 chr4 135782924 135783255 -19846865 + (TG)n Simple_repeat Simple_repeat 1 331 0 9 1620 728 218 139 31 chr4 135783677 135783871 -19846249 - B3 SINE B2 0 216 2 9 1620 1403 73 10 25 chr4 135785626 135785822 -19844298 + B2_Mm1t SINE B2 1 193 0 9 1620 480 266 18 0 chr4 135786179 135786288 -19843832 + PB1 SINE Alu 7 117 -10 9 1620 385 200 75 0 chr4 135786449 135786529 -19843591 + B4 SINE B4 1 86 -206 9 1620 1223 61 0 0 chr4 135786540 135786687 -19843433 + B1_Mus2 SINE Alu 1 147 0 9 1620 506 16 16 0 chr4 135786702 135786765 -19843355 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 9 1620 379 343 19 0 chr4 135786776 135786881 -19843239 + PB1D10 SINE Alu 3 109 -8 9 1620 1021 101 0 14 chr4 135786885 135787026 -19843094 + B1_Mur1 SINE Alu 3 141 -8 9 1620 761 246 56 33 chr4 135787040 135787254 -19842866 + ID_B1 SINE B4 6 224 0 9 1620 870 135 0 0 chr4 135787754 135787887 -19842233 + B1_Mus2 SINE Alu 6 138 -9 9 1620 381 22 0 0 chr4 135787887 135787933 -19842187 + (CATA)n Simple_repeat Simple_repeat 2 47 0 9 1620 222 37 0 0 chr4 135787937 135787964 -19842156 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1620 1435 62 22 0 chr4 135787980 135788159 -19841961 + B2_Mm2 SINE B2 1 183 -12 9 1620 234 0 0 0 chr4 135788307 135788333 -19841787 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 9 1620 1834 37 0 0 chr4 135788791 135789008 -19841112 - L1Md_A LINE L1 0 6582 6366 9 1620 259 279 135 0 chr4 135789685 135789796 -19840324 - MIR SINE MIR -77 185 60 9 1621 233 196 0 0 chr4 135790614 135790660 -19839460 - MIRc SINE MIR -145 123 78 9 1621 339 221 15 0 chr4 135790796 135790864 -19839256 + B1F SINE Alu 13 81 -68 9 1621 1604 52 0 5 chr4 135791092 135791287 -19838833 - B2_Mm2 SINE B2 0 195 2 9 1621 1494 175 68 95 chr4 135791287 135791502 -19838618 - ORR1D1 LTR MaLR -4 370 146 9 1621 1792 5 0 0 chr4 135791502 135791695 -19838425 - B2_Mm1a SINE B2 0 193 1 9 1621 1494 175 68 95 chr4 135791695 135791713 -19838407 - ORR1D1 LTR MaLR -229 145 145 9 1621 1253 48 0 0 chr4 135791713 135791859 -19838261 - B1_Mus1 SINE Alu 0 148 3 9 1621 1494 175 68 95 chr4 135791859 135791991 -19838129 - ORR1D1 LTR MaLR -229 145 14 9 1621 333 0 0 0 chr4 135792947 135792984 -19837136 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1621 406 255 12 38 chr4 135793032 135793156 -19836964 + ID_B1 SINE B4 3 117 -175 9 1621 304 193 217 0 chr4 135793129 135793212 -19836908 + PB1D10 SINE Alu 6 106 -11 9 1621 445 213 111 0 chr4 135793290 135793398 -19836722 - B3 SINE B2 -92 124 5 9 1621 432 222 11 0 chr4 135795469 135795559 -19834561 + B3 SINE B2 1 91 -125 9 1621 225 200 0 0 chr4 135796525 135796565 -19833555 + MIRm SINE MIR 116 155 -121 9 1621 375 345 69 43 chr4 135796641 135796874 -19833246 - MIR SINE MIR -16 246 8 9 1621 370 253 63 0 chr4 135797569 135797664 -19832456 + PB1D10 SINE Alu 1 101 -16 9 1621 722 118 181 90 chr4 135798317 135798494 -19831626 - B2_Mm2 SINE B2 -1 194 2 9 1621 288 310 0 29 chr4 135801053 135801156 -19828964 - MLT1A1 LTR MaLR -2 406 307 9 1621 1185 68 0 13 chr4 135801409 135801558 -19828562 + B1_Mus2 SINE Alu 1 147 0 9 1621 705 298 99 28 chr4 135801842 135802094 -19828026 + B4A SINE B4 2 271 -21 9 1621 225 0 0 0 chr4 135802102 135802127 -19827993 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1621 232 279 0 47 chr4 135802128 135802192 -19827928 + ID_B1 SINE B4 76 136 -88 9 1621 288 270 0 0 chr4 135802142 135802205 -19827915 + PB1D10 SINE Alu 6 68 -49 9 1621 183 158 53 0 chr4 135802746 135802784 -19827336 + L2b LINE L2 3369 3408 -18 9 1621 195 69 0 0 chr4 135803034 135803063 -19827057 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1621 261 271 48 42 chr4 135805504 135805653 -19824467 + MIR SINE MIR 7 160 -102 9 1621 243 239 0 0 chr4 135806610 135806656 -19823464 + RSINE1 SINE B4 2 47 -118 9 1621 1007 137 0 7 chr4 135806678 135806825 -19823295 + B1_Mur4 SINE Alu 3 148 -2 9 1621 670 12 0 0 chr4 135806829 135806911 -19823209 + L1Md_A LINE L1 6501 6582 0 9 1621 225 65 0 0 chr4 135806947 135806978 -19823142 + (CAAAC)n Simple_repeat Simple_repeat 5 35 0 9 1621 223 384 0 0 chr4 135806980 135807053 -19823067 + RSINE1 SINE B4 81 153 -12 9 1621 270 0 0 0 chr4 135807055 135807085 -19823035 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1621 378 333 76 0 chr4 135807104 135807236 -19822884 + MER63B DNA AcHobo 289 430 -6 9 1621 1313 69 80 0 chr4 135807436 135807611 -19822509 - B2_Mm2 SINE B2 -5 190 2 9 1621 692 301 48 0 chr4 135807613 135807819 -19822301 - ID_B1 SINE B4 -3 221 6 9 1621 883 199 47 65 chr4 135808296 135808511 -19821609 - B3 SINE B2 -4 212 2 9 1621 390 207 49 0 chr4 135808644 135808726 -19821394 + PB1D10 SINE Alu 27 112 -5 9 1621 1437 56 6 22 chr4 135808986 135809167 -19820953 - B2_Mm1a SINE B2 -14 179 2 9 1621 479 240 29 9 chr4 135809202 135809307 -19820813 + PB1D10 SINE Alu 3 109 -8 9 1621 223 233 49 16 chr4 135809328 135809389 -19820731 + B1F1 SINE Alu 1 63 -86 9 1621 189 254 0 0 chr4 135810845 135810900 -19819220 + (TATG)n Simple_repeat Simple_repeat 4 58 0 9 1621 201 200 0 48 chr4 135811082 135811124 -19818996 + polypurine Low_complexity Low_complexity 5 44 0 9 1621 234 0 0 0 chr4 135811257 135811283 -19818837 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1621 1249 48 0 0 chr4 135811283 135811430 -19818690 - B1_Mm SINE Alu 0 147 1 9 1621 422 270 9 26 chr4 135811637 135811751 -19818369 + PB1D10 SINE Alu 1 112 -5 9 1621 392 321 142 28 chr4 135811826 135812079 -19818041 + LTR87 LTR ERVL? 275 556 -68 9 1621 239 262 11 67 chr4 135812381 135812471 -19817649 + PB1 SINE Alu 41 125 -2 9 1621 24 0 0 0 chr4 135812471 135812495 -19817625 + AT_rich Low_complexity Low_complexity 1 24 0 9 1621 1170 48 7 0 chr4 135812497 135812642 -19817478 - B1_Mus2 SINE Alu 0 147 2 1 1621 263 289 0 62 chr4 135812836 135812917 -19817203 - RSINE1 SINE B4 -50 115 40 1 1621 210 184 0 0 chr4 135812975 135813013 -19817107 - ID SINE ID -153 71 34 1 1621 21 36 0 0 chr4 135813238 135813266 -19816854 + AT_rich Low_complexity Low_complexity 1 28 0 1 1621 294 64 21 13 chr4 135814075 135814136 -19815984 + B1_Mus2 SINE Alu 88 146 -1 1 1621 1236 55 0 0 chr4 135814281 135814427 -19815693 - B1_Mus2 SINE Alu 0 147 2 1 1621 656 289 20 20 chr4 135814795 135814993 -19815127 + ID_B1 SINE B4 27 224 0 1 1621 587 234 68 41 chr4 135815373 135815520 -19814600 - RSINE1 SINE B4 0 165 15 1 1621 575 282 70 25 chr4 135815551 135815751 -19814369 - B3 SINE B2 -1 215 7 1 1621 410 181 15 0 chr4 135816169 135816302 -19813818 + (CAGA)n Simple_repeat Simple_repeat 2 136 0 1 1621 745 11 21 0 chr4 135816333 135816427 -19813693 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 1621 258 81 0 0 chr4 135816555 135816592 -19813528 + (CTGGGG)n Simple_repeat Simple_repeat 1 37 0 1 1621 213 160 40 0 chr4 135816735 135816785 -19813335 + (CAGC)n Simple_repeat Simple_repeat 4 55 0 1 1621 313 354 33 27 chr4 135816876 135817059 -19813061 + MIRb SINE MIR 19 202 -66 1 1621 1232 95 84 0 chr4 135817516 135817695 -19812425 - B2_Mm2 SINE B2 0 195 2 1 1621 199 242 14 57 chr4 135817976 135818046 -19812074 - L2b LINE L2 -212 3163 3097 1 1621 791 144 0 35 chr4 135818116 135818260 -19811860 + B1_Mus2 SINE Alu 9 147 0 1 1621 339 348 112 24 chr4 135818331 135818514 -19811606 + B4 SINE B4 67 268 -24 1 1621 1104 127 0 0 chr4 135818514 135818814 -19811306 + (CA)n Simple_repeat Simple_repeat 1 300 0 1 1621 339 348 112 24 chr4 135818814 135818835 -19811285 + B4 SINE B4 269 289 -3 1 1621 832 254 35 10 chr4 135818851 135819050 -19811070 + ID_B1 SINE B4 4 207 -17 1 1621 386 127 0 14 chr4 135819444 135819516 -19810604 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 1 1621 584 159 119 77 chr4 135819767 135819910 -19810210 - B1_Mur2 SINE Alu 0 149 1 1 1621 208 319 42 21 chr4 135819970 135819989 -19810131 + MIR SINE MIR 136 154 -108 1 1621 1515 46 0 44 chr4 135819989 135820192 -19809928 + B2_Mm2 SINE B2 1 194 -1 1 1621 208 319 42 21 chr4 135820192 135820268 -19809852 + MIR SINE MIR 155 233 -29 1 1621 933 27 0 0 chr4 135820528 135820640 -19809480 + (CTGGGG)n Simple_repeat Simple_repeat 1 112 0 1 1621 588 205 90 0 chr4 135821364 135821486 -19808634 - B1_Mur1 SINE Alu -13 136 4 1 1621 390 214 0 0 chr4 135821571 135821660 -19808460 + CT-rich Low_complexity Low_complexity 2 90 0 1 1621 1234 120 20 20 chr4 135821673 135821868 -19808252 + B2_Mm2 SINE B2 1 195 0 1 1621 1235 41 0 0 chr4 135821873 135822020 -19808100 + B1_Mus2 SINE Alu 1 147 0 1 1621 189 0 0 0 chr4 135822025 135822046 -19808074 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1621 1216 84 78 0 chr4 135822149 135822316 -19807804 - B2_Mm2 SINE B2 -15 180 1 1 1621 781 168 8 0 chr4 135822322 135822453 -19807667 - B1_Mus1 SINE Alu -2 146 15 1 1621 567 0 0 0 chr4 135822550 135822613 -19807507 + (CTCTG)n Simple_repeat Simple_repeat 1 63 0 1 1621 462 264 27 18 chr4 135823046 135823158 -19806962 + ID_B1 SINE B4 91 203 -21 1 1621 676 134 28 63 chr4 135823220 135823363 -19806757 - B1_Mur3 SINE Alu 0 149 12 1 1621 189 0 0 0 chr4 135823596 135823617 -19806503 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1621 292 181 39 60 chr4 135824787 135824969 -19805151 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1621 563 213 94 0 chr4 135825384 135825511 -19804609 - RSINE1 SINE B4 -25 140 2 1 1621 701 154 53 23 chr4 135825551 135825684 -19804436 - B1F2 SINE Alu -1 148 12 1 1621 282 309 23 23 chr4 135825716 135825802 -19804318 + polypyrimidine Low_complexity Low_complexity 5 90 0 1 1621 1418 81 38 0 chr4 135825864 135826050 -19804070 - B2_Mm2 SINE B2 -2 193 1 1 1621 307 281 33 11 chr4 135826177 135826267 -19803853 + PB1D9 SINE Alu 10 101 -19 1 1621 584 208 17 0 chr4 135826188 135826308 -19803812 + ID_B1 SINE B4 101 222 -2 1 1621 274 302 91 28 chr4 135826189 135826332 -19803788 - YREP_Mm Unknown Unknown -1516 296 145 1 1621 408 20 0 0 chr4 135827074 135827123 -19802997 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1621 217 322 22 0 chr4 135827293 135827383 -19802737 + (GGGTG)n Simple_repeat Simple_repeat 3 94 0 1 1621 953 87 0 13 chr4 135827779 135827930 -19802190 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 1 1621 1100 96 0 0 chr4 135827930 135828086 -19802034 - B2_Mm2 SINE B2 -38 157 2 1 1621 294 273 45 0 chr4 135828111 135828194 -19801926 + ID_B1 SINE B4 50 136 -88 1 1621 224 212 326 12 chr4 135828194 135828280 -19801840 + RSINE1 SINE B4 3 115 -50 1 1621 236 100 25 0 chr4 135828297 135828337 -19801783 + (TCC)n Simple_repeat Simple_repeat 3 43 0 1 1621 1007 106 43 0 chr4 135828343 135828484 -19801636 - B1_Mus1 SINE Alu 0 148 2 1 1621 225 0 0 0 chr4 135828527 135828552 -19801568 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1621 332 336 0 0 chr4 135828562 135828675 -19801445 + ID_B1 SINE B4 105 217 -7 1 1621 183 129 0 0 chr4 135830189 135830220 -19799900 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1621 692 231 21 0 chr4 135830486 135830629 -19799491 - B1_Mus1 SINE Alu -2 146 1 1 1621 511 268 36 0 chr4 135831111 135831223 -19798897 + PB1 SINE Alu 1 116 -11 1 1621 889 256 18 14 chr4 135831254 135831476 -19798644 - ID_B1 SINE B4 0 224 2 1 1621 792 265 54 5 chr4 135831511 135831716 -19798404 + B3 SINE B2 2 216 0 1 1621 282 378 0 0 chr4 135831728 135831826 -19798294 + ID_B1 SINE B4 80 177 -47 1 1621 987 127 14 0 chr4 135832173 135832315 -19797805 - B1_Mur4 SINE Alu -5 145 2 1 1621 533 258 55 55 chr4 135832754 135832918 -19797202 + RSINE1 SINE B4 2 165 0 1 1621 894 94 0 42 chr4 135833613 135833757 -19796363 - B1_Mus2 SINE Alu 0 147 10 1 1621 521 204 7 72 chr4 135833628 135833781 -19796339 - ID_B1 SINE B4 -13 211 69 1 1621 477 0 0 0 chr4 135833864 135833917 -19796203 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1621 1251 48 0 0 chr4 135833917 135834064 -19796056 - B1_Mm SINE Alu 0 147 1 1 1621 1058 58 29 0 chr4 135834185 135834322 -19795798 + B1_Mus1 SINE Alu 2 142 -6 1 1621 515 90 13 0 chr4 135834326 135834404 -19795716 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 1 1621 624 176 83 16 chr4 135834415 135834536 -19795584 + B3 SINE B2 1 129 -87 1 1621 386 292 51 58 chr4 135834639 135834795 -19795325 - RSINE1 SINE B4 -8 157 3 1 1621 1355 69 10 41 chr4 135835506 135835703 -19794417 + B2_Mm2 SINE B2 1 191 -4 1 1621 1610 32 21 0 chr4 135835707 135835895 -19794225 + B2_Mm1a SINE B2 2 193 0 1 1621 1234 56 0 0 chr4 135835920 135836082 -19794038 + B2_Mm1a SINE B2 2 163 -30 1 1621 183 42 0 0 chr4 135836082 135836106 -19794014 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1621 267 209 14 43 chr4 135836152 135836222 -19793898 + ID4_ SINE ID 2 69 -14 1 1621 710 121 0 8 chr4 135836234 135836351 -19793769 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 1 1621 1017 64 7 0 chr4 135836351 135836492 -19793628 - B1_Mus1 SINE Alu 0 148 7 1 1621 315 221 70 0 chr4 135836572 135836658 -19793462 - ID_B1 SINE B4 -131 93 2 1 1621 1084 174 19 19 chr4 135836679 135836890 -19793230 - B3 SINE B2 -1 215 5 1 1621 308 83 21 0 chr4 135837532 135837580 -19792540 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 1 1621 1509 77 0 5 chr4 135837956 135838151 -19791969 - B2_Mm2 SINE B2 0 195 2 1 1621 303 93 0 0 chr4 135838195 135838238 -19791882 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1621 321 236 175 70 chr4 135838285 135838399 -19791721 + B3A SINE B2 1 126 -72 1 1621 261 0 0 0 chr4 135838403 135838432 -19791688 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1621 465 223 21 21 chr4 135839427 135839523 -19790597 + B3A SINE B2 2 97 -101 1 1621 406 211 39 147 chr4 135839603 135839915 -19790205 - RMER17C LTR ERVK -131 279 2 1 1621 287 267 53 0 chr4 135839918 135839993 -19790127 + B3A SINE B2 90 168 -30 1 1621 30 27 0 0 chr4 135840004 135840041 -19790079 + AT_rich Low_complexity Low_complexity 1 37 0 1 1621 439 226 30 68 chr4 135843096 135843229 -19786891 + MurSatRep1 Unknown Unknown 606 733 -1404 1 1621 1136 97 18 0 chr4 135843738 135843903 -19786217 - B2_Mm2 SINE B2 -27 168 1 1 1621 453 237 0 0 chr4 135843966 135844059 -19786061 + ID_B1 SINE B4 1 93 -131 1 1621 728 274 62 26 chr4 135844359 135844554 -19785566 + B3A SINE B2 3 204 -12 1 1621 884 167 161 0 chr4 135844821 135844995 -19785125 - B3 SINE B2 -14 202 1 1 1621 267 114 0 0 chr4 135845056 135845100 -19785020 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1621 643 311 74 4 chr4 135845149 135845407 -19784713 - B4A SINE B4 -16 276 1 1 1621 818 176 0 14 chr4 135845525 135845669 -19784451 + B1_Mus2 SINE Alu 6 147 0 1 1621 207 133 0 0 chr4 135845669 135845714 -19784406 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1621 357 301 7 7 chr4 135846938 135847075 -19783045 + MMSAT4 Satellite Satellite 31 167 -1 1 1621 28 0 0 0 chr4 135847601 135847629 -19782491 + AT_rich Low_complexity Low_complexity 1 28 0 1 1621 261 163 0 0 chr4 135848621 135848670 -19781450 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1621 28 0 0 0 chr4 135848724 135848752 -19781368 + AT_rich Low_complexity Low_complexity 1 28 0 1 1621 552 130 0 0 chr4 135849202 135849294 -19780826 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1621 425 263 8 25 chr4 135850121 135850242 -19779878 + PB1D9 SINE Alu 2 120 0 1 1621 329 294 0 12 chr4 135850270 135850356 -19779764 + RSINE1 SINE B4 4 88 -77 1 1621 628 263 134 0 chr4 135850466 135850645 -19779475 + B3 SINE B2 1 203 -13 1 1621 559 186 10 0 chr4 135850684 135850786 -19779334 - B1_Mur4 SINE Alu -46 104 2 1 1621 1489 78 0 10 chr4 135850889 135851082 -19779038 - B2_Mm2 SINE B2 -1 194 4 1 1621 383 282 23 46 chr4 135851253 135851383 -19778737 + RSINE1 SINE B4 7 133 -32 1 1621 660 243 8 55 chr4 135851479 135851684 -19778436 + B3 SINE B2 12 193 0 1 1621 928 136 0 20 chr4 135851684 135851834 -19778286 + B1_Mus2 SINE Alu 1 147 0 1 1621 216 259 17 0 chr4 135852294 135852352 -19777768 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1621 224 227 0 0 chr4 135852400 135852444 -19777676 + B1F2 SINE Alu 17 60 -89 1 1621 237 244 125 23 chr4 135852498 135852586 -19777534 + B4A SINE B4 87 183 -109 1 1621 1390 65 27 0 chr4 135852634 135852818 -19777302 + B2_Mm1t SINE B2 5 193 0 1 1621 536 142 56 9 chr4 135853618 135853725 -19776395 + B1_Mur2 SINE Alu 38 149 0 1 1621 189 0 0 0 chr4 135853725 135853746 -19776374 + (CAAAAA)n Simple_repeat Simple_repeat 6 26 0 1 1621 234 0 0 0 chr4 135853746 135853772 -19776348 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1621 1094 88 0 6 chr4 135853780 135853941 -19776179 + B2_Mm2 SINE B2 36 195 0 1 1621 376 266 81 126 chr4 135853968 135854166 -19775954 + B3 SINE B2 27 215 -1 1 1621 820 155 49 0 chr4 135854299 135854441 -19775679 + B1_Mur2 SINE Alu 1 149 0 1 1621 374 239 45 0 chr4 135854464 135854552 -19775568 + B3A SINE B2 2 93 -105 1 1621 235 148 23 58 chr4 135854851 135854937 -19775183 + CT-rich Low_complexity Low_complexity 2 84 0 1 1621 376 241 12 0 chr4 135854938 135855021 -19775099 - PB1D10 SINE Alu -14 103 20 1 1621 3256 157 33 45 chr4 135855019 135855714 -19774406 - MTC-int LTR MaLR -570 688 2 1 1621 1624 183 0 3 chr4 135855717 135856008 -19774112 - MTC LTR MaLR -8 413 124 1 1621 1521 38 38 0 chr4 135856008 135856191 -19773929 - B2_Mm1a SINE B2 -3 190 1 1 1621 789 108 0 65 chr4 135856210 135856348 -19773772 + B1_Mus2 SINE Alu 19 147 0 1 1621 185 0 40 0 chr4 135856349 135856374 -19773746 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1621 306 147 3 61 chr4 135856374 135856443 -19773677 - MTC LTR MaLR -283 136 68 1 1621 243 0 0 0 chr4 135856444 135856471 -19773649 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1 1621 227 74 0 0 chr4 135856471 135856498 -19773622 + MurSatRep1 Unknown Unknown 234 260 -1877 1 1621 920 57 0 0 chr4 135856522 135856645 -19773475 + B2_Mm1a SINE B2 1 123 -70 1 1621 1091 91 68 0 chr4 135856663 135856839 -19773281 - B2_Mm2 SINE B2 -1 194 7 1 1621 235 183 123 27 chr4 135856774 135856847 -19773273 - B4 SINE B4 -212 80 1 1 1621 366 23 0 0 chr4 135856868 135856911 -19773209 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 1621 477 60 0 0 chr4 135856916 135856983 -19773137 - B1_Mur4 SINE Alu 0 150 84 1 1621 297 128 0 0 chr4 135856986 135857033 -19773087 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 1621 1141 76 0 7 chr4 135857036 135857182 -19772938 - B1_Mm SINE Alu -1 146 2 1 1621 1692 26 0 0 chr4 135857192 135857383 -19772737 - B2_Mm1a SINE B2 -2 191 1 1 1621 375 275 0 0 chr4 135857825 135857916 -19772204 + B3 SINE B2 126 216 0 1 1621 634 133 177 0 chr4 135858044 135858157 -19771963 + B1_Mus2 SINE Alu 8 140 -7 1 1621 1855 167 136 7 chr4 135858298 135858709 -19771411 - RMER16 LTR ERVK 0 533 70 1 1621 552 237 0 30 chr4 135858981 135859116 -19771004 - B1F1 SINE Alu -7 142 12 1 1621 347 261 120 0 chr4 135859202 135859294 -19770826 + PB1D10 SINE Alu 1 103 -14 1 1621 243 0 0 0 chr4 135859294 135859321 -19770799 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1 1621 859 251 22 14 chr4 135859366 135859588 -19770532 + ID_B1 SINE B4 1 224 0 1 1621 338 0 24 0 chr4 135860470 135860512 -19769608 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1621 189 0 0 0 chr4 135860512 135860533 -19769587 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1621 1493 73 5 0 chr4 135860548 135860739 -19769381 + B2_Mm1t SINE B2 2 193 0 1 1621 368 362 15 55 chr4 135860771 135860951 -19769169 + B3A SINE B2 4 179 -19 1 1621 714 140 103 0 chr4 135860951 135861087 -19769033 + B1_Mur4 SINE Alu 1 150 0 1 1621 1231 68 0 0 chr4 135861089 135861237 -19768883 + B1_Mus1 SINE Alu 1 148 0 1 1621 368 362 15 55 chr4 135861237 135861252 -19768868 + B3A SINE B2 180 194 -4 1 1621 524 200 88 7 chr4 135861276 135861412 -19768708 - B3 SINE B2 -1 215 69 1 1621 1423 98 5 36 chr4 135861407 135861629 -19768491 - ORR1A2 LTR MaLR -20 307 93 1 1621 389 261 124 68 chr4 135861684 135861825 -19768295 - B4A SINE B4 -44 248 2 1 1621 832 110 0 0 chr4 135861708 135861835 -19768285 - B1_Mus1 SINE Alu 0 148 22 1 1621 586 118 0 0 chr4 135861825 135861918 -19768202 - B2_Mm2 SINE B2 -101 94 2 1 1621 557 181 0 66 chr4 135861918 135862053 -19768067 - ORR1A1 LTR MaLR -220 126 1 1 1621 437 287 90 7 chr4 135862147 135862291 -19767829 + B3A SINE B2 1 156 -42 1 1621 38 0 0 0 chr4 135862303 135862341 -19767779 + AT_rich Low_complexity Low_complexity 1 38 0 1 1621 863 141 59 0 chr4 135862354 135862489 -19767631 - B1_Mur4 SINE Alu -7 143 1 1 1621 320 267 13 0 chr4 135862936 135863011 -19767109 + ID4 SINE ID 5 80 -3 1 1621 1222 91 11 54 chr4 135863877 135864062 -19766058 + B2_Mm1t SINE B2 3 179 -14 1 1621 323 125 13 34 chr4 135864123 135864190 -19765930 + B2_Mm2 SINE B2 46 116 -82 1 1621 267 31 0 0 chr4 135864207 135864239 -19765881 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1621 506 161 0 11 chr4 135864265 135864359 -19765761 + B1_Mur4 SINE Alu 2 94 -56 1 1621 761 200 159 21 chr4 135864409 135864598 -19765522 + B3 SINE B2 2 216 0 1 1621 672 209 54 0 chr4 135864638 135864767 -19765353 + B1_Mur2 SINE Alu 2 137 -12 1 1621 198 0 0 0 chr4 135864767 135864789 -19765331 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1621 720 245 6 24 chr4 135864861 135865028 -19765092 - B3 SINE B2 -1 215 52 1 1621 369 302 31 115 chr4 135865335 135865479 -19764641 - B4A SINE B4 -117 175 42 1 1621 1101 44 15 0 chr4 135865479 135865616 -19764504 - B1_Mus1 SINE Alu -8 140 2 1 1621 369 302 31 115 chr4 135865616 135865662 -19764458 - B4A SINE B4 -251 41 1 1 1621 281 266 43 96 chr4 135865722 135865909 -19764211 - MLT1A1 LTR MaLR -185 223 47 1 1621 21 36 0 0 chr4 135870964 135870992 -19759128 + AT_rich Low_complexity Low_complexity 1 28 0 1 1621 22 0 0 0 chr4 135873210 135873232 -19756888 + AT_rich Low_complexity Low_complexity 1 22 0 1 1621 536 227 42 0 chr4 135873232 135873351 -19756769 - B1F SINE Alu -5 144 21 1 1621 279 0 0 0 chr4 135873436 135873467 -19756653 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1621 1183 35 35 0 chr4 135873467 135873610 -19756510 - B1_Mus1 SINE Alu 0 148 1 1 1621 325 222 16 0 chr4 135873802 135873865 -19756255 - ID4 SINE ID -5 78 15 1 1621 1215 28 14 0 chr4 135874366 135874511 -19755609 - B1_Mus2 SINE Alu 0 147 1 1 1621 441 189 66 0 chr4 135874637 135874743 -19755377 - B3A SINE B2 -83 115 3 1 1621 632 239 44 83 chr4 135874766 135874971 -19755149 - B3A SINE B2 -1 197 1 1 1621 838 187 0 0 chr4 135875007 135875141 -19754979 - B1_Mus1 SINE Alu -13 135 2 1 1621 1493 65 16 0 chr4 135875596 135875782 -19754338 - B2_Mm2 SINE B2 -4 191 3 1 1621 247 271 129 0 chr4 135875917 135876002 -19754118 - PB1D10 SINE Alu -21 96 1 1 1621 323 301 50 29 chr4 135876006 135876146 -19753974 - B1F2 SINE Alu -1 148 6 1 1621 453 84 0 0 chr4 135876269 135876340 -19753780 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1621 484 242 0 46 chr4 135876404 135876534 -19753586 - B1_Mus1 SINE Alu -21 127 4 1 1621 296 289 16 62 chr4 135876427 135876556 -19753564 - B4 SINE B4 -98 194 72 1 1621 408 324 156 0 chr4 135876557 135876730 -19753390 - ID_B1 SINE B4 0 224 25 1 1621 432 0 0 0 chr4 135876982 135877030 -19753090 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1621 582 266 31 31 chr4 135877561 135877724 -19752396 - RSINE1 SINE B4 -1 164 2 1 1621 882 195 130 0 chr4 135877837 135878022 -19752098 - B3 SINE B2 -7 209 1 1 1621 636 264 14 7 chr4 135878151 135878296 -19751824 + RSINE1 SINE B4 3 148 -17 1 1621 1487 54 38 0 chr4 135878496 135878680 -19751440 - B2_Mm2 SINE B2 -4 191 1 1 1621 234 286 0 16 chr4 135878697 135878761 -19751359 - ID_B1 SINE B4 -2 222 160 1 1621 1054 122 71 16 chr4 135878886 135879069 -19751051 - B2_Mm2 SINE B2 -2 193 1 1 1621 310 279 0 12 chr4 135879132 135879212 -19750908 - B4A SINE B4 -2 290 212 1 1621 427 303 8 0 chr4 135879254 135879376 -19750744 - B3A SINE B2 -75 123 1 1 1621 280 333 92 38 chr4 135879446 135879577 -19750543 - RSINE1 SINE B4 -19 146 9 1 1621 297 274 142 45 chr4 135879601 135879735 -19750385 + B4 SINE B4 17 163 -129 1 1621 362 167 103 0 chr4 135879716 135879794 -19750326 - B1_Mur4 SINE Alu -56 94 9 1 1621 21 0 0 0 chr4 135880107 135880128 -19749992 + AT_rich Low_complexity Low_complexity 1 21 0 1 1621 317 278 58 50 chr4 135880128 135880249 -19749871 + ID_B1 SINE B4 79 200 -24 1 1621 471 249 64 144 chr4 135880281 135880483 -19749637 + B3A SINE B2 10 196 -2 1 1621 474 282 41 138 chr4 135880483 135880701 -19749419 + B3A SINE B2 1 197 -1 1 1621 338 198 277 0 chr4 135880711 135880842 -19749278 - B3 SINE B2 0 216 50 1 1621 237 65 0 0 chr4 135880863 135880894 -19749226 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1621 1600 57 0 0 chr4 135881006 135881200 -19748920 - B2_Mm2 SINE B2 0 195 2 1 1621 317 258 0 33 chr4 135881292 135881384 -19748736 - PB1 SINE Alu -17 110 22 1 1621 403 237 56 56 chr4 135881407 135881532 -19748588 - B1_Mur1 SINE Alu -23 126 2 1 1621 204 122 0 0 chr4 135881541 135881582 -19748538 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1621 320 269 13 0 chr4 135881592 135881670 -19748450 - ID4_ SINE ID -4 79 1 1 1621 537 217 0 0 chr4 135881869 135881975 -19748145 + B1_Mus2 SINE Alu 33 138 -9 1 1621 277 247 123 0 chr4 135882390 135882471 -19747649 - B1_Mus2 SINE Alu -1 146 56 1 1621 22 0 0 0 chr4 135882482 135882504 -19747616 + AT_rich Low_complexity Low_complexity 1 22 0 1 1621 1164 55 14 0 chr4 135882512 135882658 -19747462 + B1_Mus1 SINE Alu 1 148 0 1 1621 414 261 8 17 chr4 135882767 135882884 -19747236 - B1_Mur1 SINE Alu 0 149 34 1 1621 412 95 0 0 chr4 135882961 135883024 -19747096 + B1_Mur4 SINE Alu 81 143 -7 1 1621 249 227 0 43 chr4 135882962 135883031 -19747089 + ID_B1 SINE B4 159 224 0 1 1621 836 176 48 6 chr4 135884141 135884307 -19745813 - B2_Mm2 SINE B2 -22 173 1 1 1621 1423 45 78 0 chr4 135884490 135884508 -19745612 - B2_Mm1a SINE B2 0 193 176 1 1621 222 37 0 0 chr4 135884508 135884535 -19745585 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1621 1423 45 78 0 chr4 135884535 135884695 -19745425 - B2_Mm1a SINE B2 -18 175 2 1 1621 23 0 0 0 chr4 135884782 135884805 -19745315 + AT_rich Low_complexity Low_complexity 1 23 0 1 1621 705 116 25 143 chr4 135884862 135885023 -19745097 + B1_Mus1 SINE Alu 7 148 0 1 1621 391 244 0 0 chr4 135886012 135886094 -19744026 - B4A SINE B4 -205 87 6 1 1621 599 208 0 0 chr4 135886105 135886211 -19743909 - B1_Mur1 SINE Alu -42 107 2 1 1621 27 0 0 0 chr4 135886217 135886244 -19743876 + AT_rich Low_complexity Low_complexity 1 27 0 1 1621 313 316 59 34 chr4 135886540 135886658 -19743462 + RSINE1 SINE B4 9 129 -36 1 1621 201 74 0 0 chr4 135887036 135887063 -19743057 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1 1621 1047 137 0 0 chr4 135887063 135887209 -19742911 - B1_Mur4 SINE Alu -1 149 4 1 1621 216 0 0 0 chr4 135888201 135888225 -19741895 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1621 297 277 89 0 chr4 135888749 135888850 -19741270 - B1F SINE Alu -2 147 38 1 1621 1717 26 0 0 chr4 135889626 135889819 -19740301 + B2_Mm1a SINE B2 1 193 0 1 1621 628 192 0 0 chr4 135889984 135890088 -19740032 - B1_Mm SINE Alu -35 112 9 1 1621 426 117 0 0 chr4 135890086 135890146 -19739974 - B2_Mm2 SINE B2 -135 60 1 1 1621 247 304 14 0 chr4 135890292 135890361 -19739759 - ID4 SINE ID 0 83 14 1 1621 651 189 12 149 chr4 135890487 135890655 -19739465 - B1_Mus2 SINE Alu 0 147 3 1 1621 22 56 0 0 chr4 135891611 135891647 -19738473 + AT_rich Low_complexity Low_complexity 1 36 0 1 1621 371 263 194 19 chr4 135892415 135892570 -19737550 - B3A SINE B2 -16 182 1 1 1621 661 203 0 0 chr4 135892732 135892855 -19737265 - B1_Mur2 SINE Alu -26 123 1 1 1621 24 0 0 0 chr4 135892927 135892951 -19737169 + AT_rich Low_complexity Low_complexity 1 24 0 1 1621 1063 171 296 11 chr4 135893016 135893300 -19736820 - MTD LTR MaLR 0 419 55 1 1621 1524 165 34 102 chr4 135893563 135893975 -19736145 - RLTR31_Mm LTR ERVK 0 561 178 1 1621 236 274 98 54 chr4 135894018 135894130 -19735990 + MT2B LTR ERVL 147 263 -338 1 1621 326 223 243 0 chr4 135894044 135894147 -19735973 + B1_Mus1 SINE Alu 8 135 -13 1 1621 694 216 24 41 chr4 135894480 135894649 -19735471 - B3 SINE B2 -3 213 48 1 1621 821 209 62 20 chr4 135894834 135895029 -19735091 - B3 SINE B2 -13 203 1 1 1621 254 197 210 16 chr4 135897314 135897376 -19732744 - ID4_ SINE ID -9 74 1 1 1621 24 0 0 0 chr4 135899587 135899611 -19730509 + AT_rich Low_complexity Low_complexity 1 24 0 1 1621 183 204 0 0 chr4 135899653 135899697 -19730423 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1621 251 123 0 34 chr4 135899942 135900001 -19730119 + T-rich Low_complexity Low_complexity 2 58 0 1 1621 31 44 0 0 chr4 135900383 135900428 -19729692 + AT_rich Low_complexity Low_complexity 1 45 0 1 1621 244 278 27 14 chr4 135900570 135900643 -19729477 + ID2 SINE ID 1 74 -9 1 1621 426 225 12 0 chr4 135900818 135900898 -19729222 + ID4 SINE ID 3 83 0 1 1621 23 0 0 0 chr4 135901862 135901885 -19728235 + AT_rich Low_complexity Low_complexity 1 23 0 1 1621 273 250 53 0 chr4 135902912 135902988 -19727132 - 5S rRNA rRNA -41 80 1 1 1621 270 0 0 0 chr4 135903193 135903223 -19726897 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1621 271 194 0 61 chr4 135903223 135903289 -19726831 - B1F2 SINE Alu -81 68 7 1 1621 21 0 0 0 chr4 135903468 135903489 -19726631 + AT_rich Low_complexity Low_complexity 1 21 0 1 1621 1019 109 7 7 chr4 135903994 135904141 -19725979 + B1_Mus1 SINE Alu 1 147 -1 1 1621 369 201 5 3 chr4 135904868 135904949 -19725171 - B1_Mus2 SINE Alu -39 88 7 1 1621 201 74 0 0 chr4 135904958 135904985 -19725135 + (CTG)n Simple_repeat Simple_repeat 2 28 0 1 1621 377 211 31 6 chr4 135904983 135905145 -19724975 + CT-rich Low_complexity Low_complexity 4 169 0 1 1621 305 235 64 64 chr4 135905158 135905267 -19724853 - PB1D9 SINE Alu -10 110 2 1 1621 240 111 0 0 chr4 135905950 135905986 -19724134 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1621 286 209 28 16 chr4 135906024 135906105 -19724015 + ID4 SINE ID 1 76 -76 1 1621 1124 68 0 14 chr4 135906105 135906253 -19723867 + B1_Mus2 SINE Alu 2 147 0 1 1621 250 246 15 67 chr4 135906253 135906306 -19723814 + BC1_Mm scRNA scRNA 77 128 -24 1 1621 565 167 0 10 chr4 135906425 135906522 -19723598 - B3 SINE B2 -118 98 3 1 1621 549 259 13 33 chr4 135906768 135906920 -19723200 + B1_Mur1 SINE Alu 1 149 0 1 1621 231 200 365 0 chr4 135907130 135907202 -19722918 + PB1D9 SINE Alu 1 100 -20 1 1621 216 0 0 0 chr4 135907202 135907226 -19722894 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1 1621 231 200 365 0 chr4 135907226 135907238 -19722882 + PB1D9 SINE Alu 101 115 -5 1 1621 207 0 0 0 chr4 135907522 135907545 -19722575 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1621 277 304 50 67 chr4 135907553 135907673 -19722447 - B1F2 SINE Alu -25 124 7 1 1621 793 183 35 21 chr4 135907769 135907914 -19722206 + B1_Mur4 SINE Alu 1 147 -3 1 1621 418 309 54 36 chr4 135907993 135908161 -19721959 + ID_B1 SINE B4 32 202 -22 1 1621 239 355 43 11 chr4 135908314 135908408 -19721712 + B1F1 SINE Alu 1 97 -52 1 1621 804 173 22 0 chr4 135908411 135908550 -19721570 + B1_Mur1 SINE Alu 8 149 0 1 1621 213 227 45 0 chr4 135909450 135909516 -19720604 + ID4_ SINE ID 9 77 -6 1 1621 373 252 75 0 chr4 135909928 135910035 -19720085 + PB1D9 SINE Alu 6 120 0 1 1621 772 255 38 5 chr4 135910569 135910782 -19719338 + ID_B1 SINE B4 2 221 -3 1 1621 240 130 0 0 chr4 135911139 135911185 -19718935 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1621 1188 48 7 0 chr4 135911187 135911333 -19718787 - B1_Mus2 SINE Alu 0 147 1 1 1621 238 245 67 150 chr4 135912236 135912356 -19717764 + PB1D7 SINE Alu 1 110 -10 1 1621 251 203 0 48 chr4 135913469 135913531 -19716589 + B4A SINE B4 86 144 -148 1 1621 783 220 62 5 chr4 135913547 135913739 -19716381 + B3 SINE B2 3 205 -11 1 1621 1157 58 0 0 chr4 135914150 135914287 -19715833 + B1_Mus2 SINE Alu 2 138 -9 1 1621 352 197 18 3 chr4 135914380 135914460 -19715660 + PB1D10 SINE Alu 2 82 -66 1 1621 233 232 96 12 chr4 135914397 135914480 -19715640 + B4A SINE B4 102 191 -101 1 1621 474 209 101 36 chr4 135914774 135914913 -19715207 + B1_Mur1 SINE Alu 2 149 0 1 1621 829 228 152 23 chr4 135916188 135916542 -19713578 - L1MB7 LINE L1 -176 6008 5609 1 1621 516 190 20 0 chr4 135916904 135917004 -19713116 + PB1D9 SINE Alu 5 106 -14 1 1621 528 16 0 0 chr4 135917028 135917089 -19713031 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1621 790 154 42 7 chr4 135917518 135917662 -19712458 + B1_Mur2 SINE Alu 1 149 0 1 1621 1525 177 65 16 chr4 135917706 135918028 -19712092 - ORR1C2 LTR MaLR -9 375 38 1 1621 189 0 0 0 chr4 135918040 135918061 -19712059 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1621 461 200 138 9 chr4 135918221 135918337 -19711783 + ID_B1 SINE B4 92 222 -2 1 1621 812 135 0 22 chr4 135918417 135918553 -19711567 + B2_Mm2 SINE B2 1 133 -62 1 1621 325 223 215 0 chr4 135918626 135918747 -19711373 + ID_B1 SINE B4 5 151 -73 1 1621 432 264 0 0 chr4 135918751 135918842 -19711278 + B4A SINE B4 3 93 -199 1 1621 388 237 2 47 chr4 135918858 135918966 -19711154 + B3A SINE B2 15 117 -78 1 1621 553 222 221 6 chr4 135919004 135919176 -19710944 + B3 SINE B2 3 211 -5 1 1621 326 228 94 26 chr4 135919251 135919368 -19710752 + B3 SINE B2 73 197 -19 1 1621 452 228 234 32 chr4 135919378 135919532 -19710588 + B4A SINE B4 102 286 -6 1 1621 275 231 177 99 chr4 135919568 135919752 -19710368 + B3A SINE B2 1 212 -4 1 1621 250 213 143 26 chr4 135919790 135919867 -19710253 + B4A SINE B4 3 88 -204 1 1621 237 236 214 0 chr4 135919931 135920020 -19710100 - MLT1F LTR MaLR -173 375 268 1 1621 773 155 20 34 chr4 135920324 135920471 -19709649 + B1_Mur3 SINE Alu 5 149 0 1 1621 270 238 36 36 chr4 135920600 135920683 -19709437 + PB1D9 SINE Alu 38 120 0 1 1621 284 234 81 50 chr4 135920730 135920829 -19709291 + PB1D7 SINE Alu 19 120 0 1 1621 1281 77 55 0 chr4 135920832 135921014 -19709106 + B2_Mm1t SINE B2 2 193 0 1 1621 662 283 29 72 chr4 135921042 135921320 -19708800 + B4A SINE B4 21 286 -6 1 1621 340 250 12 0 chr4 135921382 135921466 -19708654 + B1_Mur3 SINE Alu 2 86 -63 1 1621 552 140 0 0 chr4 135921506 135921599 -19708521 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1621 435 19 0 0 chr4 135921599 135921651 -19708469 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1622 757 201 0 20 chr4 135921669 135921816 -19708304 + B1_Mus2 SINE Alu 3 146 -1 1 1622 266 244 62 115 chr4 135921910 135922040 -19708080 + RSINE1 SINE B4 34 156 -9 1 1622 306 0 0 0 chr4 135922119 135922153 -19707967 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1622 1239 203 111 55 chr4 135922155 135922357 -19707763 + MTD LTR MaLR 1 209 -210 1 1622 767 251 64 0 chr4 135922357 135922544 -19707576 + B3 SINE B2 5 203 -13 1 1622 1239 203 111 55 chr4 135922544 135922738 -19707382 + MTD LTR MaLR 210 419 0 1 1622 1663 104 32 102 chr4 135922852 135923195 -19706925 - ORR1A4 LTR MaLR -10 319 1 1 1622 277 311 103 9 chr4 135924183 135924290 -19705830 + B1_Mur3 SINE Alu 32 148 -1 1 1622 1090 185 62 0 chr4 135924421 135924632 -19705488 - URR1B DNA MER1_type -1 224 1 1 1622 264 263 0 0 chr4 135925479 135925536 -19704584 + ID4_ SINE ID 1 57 -26 1 1622 810 246 16 5 chr4 135926023 135926211 -19703909 + ID_B1 SINE B4 35 224 0 1 1622 221 83 0 27 chr4 135926221 135926258 -19703862 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 1 1622 1054 108 7 13 chr4 135926420 135926570 -19703550 - B1_Mur4 SINE Alu -1 149 1 1 1622 1250 108 16 16 chr4 135926754 135926942 -19703178 + B2_Mm2 SINE B2 1 188 -7 1 1622 1548 37 27 0 chr4 135927038 135927225 -19702895 + B2_Mm1a SINE B2 2 193 0 1 1622 951 115 267 0 chr4 135927326 135927491 -19702629 + B3 SINE B2 2 210 -6 1 1622 3213 147 79 129 chr4 135927799 135928718 -19701402 - RMER19B LTR ERVK -39 863 19 1 1622 1235 48 0 0 chr4 135928729 135928875 -19701245 + B1_Mus1 SINE Alu 2 147 -1 1 1622 597 158 0 26 chr4 135928904 135929021 -19701099 - RMER19B LTR ERVK -788 114 1 1 1622 907 254 0 18 chr4 135930069 135930286 -19699834 - B3 SINE B2 0 216 4 1 1622 504 59 0 0 chr4 135930433 135930501 -19699619 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1622 263 246 0 0 chr4 135930549 135930618 -19699502 - ID4 SINE ID -13 70 2 1 1622 270 292 21 63 chr4 135930771 135930866 -19699254 + ID_B1 SINE B4 51 141 -83 1 1622 343 312 0 0 chr4 135930815 135930895 -19699225 + B1F SINE Alu 10 89 -60 1 1622 559 168 1 41 chr4 135930909 135931043 -19699077 + B4A SINE B4 106 232 -60 1 1622 724 228 48 21 chr4 135931044 135931232 -19698888 + B3A SINE B2 5 197 -1 1 1622 4166 77 11 0 chr4 135931309 135931857 -19698263 + L1_Mus4 LINE L1 6080 6633 -3 1 1622 658 248 38 0 chr4 135931989 135932146 -19697974 - RSINE1 SINE B4 0 165 3 1 1622 490 224 118 16 chr4 135933334 135933461 -19696659 + ID_B1 SINE B4 84 223 -1 1 1622 183 42 0 0 chr4 135933550 135933574 -19696546 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1622 3278 53 13 0 chr4 135934221 135934616 -19695504 + MTB LTR MaLR 1 400 0 1 1622 200 35 35 0 chr4 135934688 135934717 -19695403 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1622 531 259 105 0 chr4 135934725 135934887 -19695233 - MLT1D LTR MaLR -78 427 249 1 1622 745 221 74 111 chr4 135934928 135935064 -19695056 + MTEa LTR MaLR 51 174 -205 1 1622 3173 28 0 0 chr4 135935064 135935418 -19694702 - IAPEY2_LTR LTR ERVK -3 354 1 1 1622 745 221 74 111 chr4 135935418 135935606 -19694514 + MTEa LTR MaLR 175 363 -16 1 1622 576 261 107 6 chr4 135935628 135935805 -19694315 - B4A SINE B4 -50 242 48 1 1622 2619 138 76 19 chr4 135935806 135935970 -19694150 - RLTR19 LTR ERVK 0 499 329 1 1622 615 27 0 0 chr4 135935970 135936043 -19694077 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1622 297 0 0 0 chr4 135936043 135936075 -19694045 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1622 2619 138 76 19 chr4 135936075 135936381 -19693739 - RLTR19 LTR ERVK -171 328 2 1 1622 317 163 16 0 chr4 135936409 135936478 -19693642 - B1_Mus1 SINE Alu -14 106 32 1 1622 347 233 14 0 chr4 135936492 135936565 -19693555 - ID4_ SINE ID 0 83 10 1 1622 544 249 181 3 chr4 135936564 135936846 -19693274 + LTR37A LTR ERV1 95 426 0 1 1622 390 259 0 0 chr4 135936958 135937223 -19692897 + (CA)n Simple_repeat Simple_repeat 1 265 0 1 1622 803 238 102 115 chr4 135937303 135937387 -19692733 - B4A SINE B4 -1 291 231 1 1622 1431 83 10 5 chr4 135937387 135937580 -19692540 - B2_Mm2 SINE B2 -1 194 1 1 1622 803 238 102 115 chr4 135937580 135937790 -19692330 - B4A SINE B4 -62 230 1 1 1622 305 264 43 65 chr4 135937829 135938082 -19692038 + ORR1E LTR MaLR 113 377 -2 1 1622 727 209 97 53 chr4 135939071 135939116 -19691004 - B3 SINE B2 0 216 166 1 1622 180 0 0 0 chr4 135939116 135939136 -19690984 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1622 727 209 97 53 chr4 135939136 135939297 -19690823 - B3 SINE B2 -51 165 2 1 1622 258 191 70 42 chr4 135939315 135939386 -19690734 + ID_B1 SINE B4 64 136 -88 1 1622 270 188 16 0 chr4 135939340 135939404 -19690716 + PB1D10 SINE Alu 12 76 -41 1 1622 901 139 66 44 chr4 135940266 135940447 -19689673 - B2_Mm2 SINE B2 -9 186 2 1 1622 252 77 0 0 chr4 135940454 135940493 -19689627 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1622 920 129 7 0 chr4 135940493 135940627 -19689493 - B1_Mus1 SINE Alu -12 136 2 1 1622 194 57 0 54 chr4 135940875 135940888 -19689232 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 0 1 1622 1660 37 0 0 chr4 135940888 135941077 -19689043 + B2_Mm1a SINE B2 2 190 -3 1 1622 194 57 0 54 chr4 135941077 135941100 -19689020 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 1622 506 248 32 16 chr4 135941437 135941560 -19688560 - RSINE1 SINE B4 -38 127 3 1 1622 347 253 105 0 chr4 135941576 135941671 -19688449 - ID_B1 SINE B4 -13 211 107 1 1622 1241 34 0 14 chr4 135941999 135942147 -19687973 + B1_Mus2 SINE Alu 2 147 0 1 1622 225 0 0 0 chr4 135942188 135942213 -19687907 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1 1622 695 188 20 20 chr4 135942213 135942352 -19687768 - B1_Mur3 SINE Alu -9 140 1 1 1622 789 214 117 25 chr4 135942378 135942575 -19687545 - B3 SINE B2 -1 215 1 1 1622 318 106 0 0 chr4 135942596 135942643 -19687477 + (ATG)n Simple_repeat Simple_repeat 2 48 0 1 1622 477 0 0 0 chr4 135942662 135942715 -19687405 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1622 394 243 126 94 chr4 135942891 135943050 -19687070 - RSINE1 SINE B4 0 165 2 1 1622 207 245 0 0 chr4 135943718 135943767 -19686353 + G-rich Low_complexity Low_complexity 1 49 0 1 1622 496 259 0 36 chr4 135943992 135944104 -19686016 - B4A SINE B4 -184 108 1 1 1622 241 304 0 0 chr4 135944138 135944194 -19685926 - ID2 SINE ID -4 79 24 1 1622 997 123 12 0 chr4 135944206 135944376 -19685744 + (TCC)n Simple_repeat Simple_repeat 2 173 0 1 1622 372 196 74 0 chr4 135944401 135944487 -19685633 - PB1D7 SINE Alu -2 125 27 1 1622 788 162 7 14 chr4 135944767 135944911 -19685209 + B1_Mus2 SINE Alu 3 145 -2 1 1622 259 0 0 0 chr4 135944915 135944949 -19685171 + B3A SINE B2 1 34 -164 1 1622 1268 62 23 0 chr4 135944953 135945130 -19684990 + B2_Mm2 SINE B2 15 195 0 1 1622 401 214 0 0 chr4 135945328 135945398 -19684722 + B1F1 SINE Alu 3 72 -77 1 1622 347 348 73 21 chr4 135945743 135945934 -19684186 - MIR SINE MIR -42 220 20 1 1622 386 267 38 0 chr4 135946233 135946338 -19683782 + PB1D10 SINE Alu 1 109 -8 1 1622 1262 82 5 37 chr4 135946347 135946537 -19683583 + B2_Mm1a SINE B2 1 184 -9 1 1622 942 149 38 22 chr4 135946982 135947167 -19682953 + B2_Mm2 SINE B2 1 188 -7 1 1622 241 349 87 8 chr4 135947194 135947321 -19682799 + MIRb SINE MIR 63 199 -69 1 1622 480 274 6 41 chr4 135947402 135947573 -19682547 - B3A SINE B2 -23 175 8 1 1622 683 239 14 0 chr4 135948434 135948576 -19681544 - B1_Mur1 SINE Alu -5 144 1 1 1622 500 272 66 7 chr4 135948755 135948892 -19681228 - B1F SINE Alu -2 147 3 1 1622 916 173 139 183 chr4 135949002 135949369 -19680751 - MTC LTR MaLR -1 420 70 1 1622 714 161 236 0 chr4 135949379 135949553 -19680567 - B3 SINE B2 0 216 2 1 1622 875 167 0 0 chr4 135949627 135949771 -19680349 - B1_Mur2 SINE Alu -2 147 4 1 1622 262 146 55 0 chr4 135950091 135950146 -19679974 - B1F1 SINE Alu -8 141 84 1 1622 664 231 85 39 chr4 135950392 135950545 -19679575 + RSINE1 SINE B4 6 165 0 1 1622 1135 42 21 0 chr4 135950568 135950711 -19679409 - B1_Mm SINE Alu -1 146 1 1 1622 1105 72 88 23 chr4 135950720 135950891 -19679229 - B2_Mm2 SINE B2 -9 186 5 1 1622 415 210 11 192 chr4 135950917 135950951 -19679169 + B4 SINE B4 8 40 -252 1 1622 284 0 28 0 chr4 135950951 135950987 -19679133 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1622 415 210 11 192 chr4 135950987 135951129 -19678991 + B4 SINE B4 41 152 -140 1 1622 191 36 36 0 chr4 135951259 135951287 -19678833 + (TCC)n Simple_repeat Simple_repeat 1 29 0 1 1622 392 263 30 0 chr4 135951298 135951397 -19678723 - PB1D10 SINE Alu -15 102 1 1 1622 1193 61 0 24 chr4 135951581 135951748 -19678372 + B2_Mm2 SINE B2 2 164 -31 1 1622 1103 120 22 17 chr4 135951761 135951939 -19678181 + B2_Mm1t SINE B2 1 179 -14 1 1622 278 180 0 0 chr4 135951971 135952021 -19678099 + B2_Mm2 SINE B2 47 96 -99 1 1622 198 0 0 0 chr4 135952127 135952149 -19677971 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1622 365 301 81 8 chr4 135952566 135952690 -19677430 + RSINE1 SINE B4 4 136 -29 1 1622 213 191 24 0 chr4 135952710 135952752 -19677368 - ID4_ SINE ID 0 83 41 1 1622 732 246 30 15 chr4 135952750 135952948 -19677172 + MLT1A0 LTR MaLR 87 287 -78 1 1622 998 32 8 0 chr4 135952959 135953085 -19677035 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 1 1622 610 93 187 0 chr4 135953085 135953192 -19676928 - B1_Mur4 SINE Alu -13 137 11 1 1622 468 0 0 0 chr4 135953192 135953244 -19676876 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1622 205 284 167 33 chr4 135953309 135953429 -19676691 + MIRb SINE MIR 43 178 -90 1 1622 319 127 32 0 chr4 135954151 135954214 -19675906 + GA-rich Low_complexity Low_complexity 1 65 0 1 1622 447 167 125 0 chr4 135954421 135954517 -19675603 + B1F1 SINE Alu 40 147 -2 1 1622 248 196 0 0 chr4 135954587 135954633 -19675487 + tRNA-Ala-GCG tRNA tRNA 20 65 -10 1 1622 441 205 0 0 chr4 135954638 135954750 -19675370 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 1622 210 37 0 0 chr4 135954811 135954838 -19675282 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1622 408 367 0 0 chr4 135954855 135955035 -19675085 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1622 246 315 0 0 chr4 135955055 135955233 -19674887 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1622 275 136 203 0 chr4 135955377 135955436 -19674684 - ID4 SINE ID -11 72 2 1 1622 254 331 134 0 chr4 135955607 135955749 -19674371 - MIR SINE MIR -59 203 43 1 1622 3418 15 2 0 chr4 135955861 135956256 -19673864 - MTA_Mm LTR MaLR 0 396 1 1 1622 1046 233 24 138 chr4 135956309 135956687 -19673433 - MTE2a LTR MaLR -6 373 39 1 1622 1190 47 0 0 chr4 135957598 135957746 -19672374 - B1_Mus1 SINE Alu 0 148 1 1 1622 195 268 0 18 chr4 135958105 135958162 -19671958 - MIR SINE MIR -72 136 81 1 1622 501 271 57 0 chr4 135958274 135958396 -19671724 - ID_B1 SINE B4 -89 135 7 1 1622 525 319 0 41 chr4 135958859 135959006 -19671114 - ID_B1 SINE B4 -4 220 80 1 1622 488 263 91 0 chr4 135959038 135959213 -19670907 + B3A SINE B2 2 192 -6 1 1622 660 183 273 17 chr4 135959215 135959387 -19670733 + B3 SINE B2 1 216 0 1 1622 864 76 114 0 chr4 135959425 135959557 -19670563 + B1_Mus1 SINE Alu 1 147 -1 1 1622 1345 56 22 0 chr4 135959560 135959738 -19670382 + B2_Mm2 SINE B2 2 183 -12 1 1622 207 0 0 0 chr4 135959738 135959761 -19670359 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1622 187 104 0 40 chr4 135959766 135959816 -19670304 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1622 565 197 105 0 chr4 135959824 135959976 -19670144 + ID_B1 SINE B4 1 168 -56 1 1622 276 300 0 0 chr4 135960067 135960147 -19669973 - ID4 SINE ID -2 81 2 1 1622 282 342 0 0 chr4 135960185 135960258 -19669862 - ID4 SINE ID -10 73 1 1 1622 315 71 0 0 chr4 135960289 135960331 -19669789 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1622 765 108 68 23 chr4 135960362 135960495 -19669625 - B1_Mur4 SINE Alu 0 150 12 1 1622 429 225 57 96 chr4 135960365 135960522 -19669598 - ID_B1 SINE B4 0 224 74 1 1622 351 300 7 28 chr4 135960931 135961075 -19669045 - HAL1-2a_MD LINE L1 -550 2474 2334 1 1622 613 248 21 0 chr4 135961228 135961369 -19668751 - B1F1 SINE Alu -5 144 1 1 1622 842 165 184 16 chr4 135961386 135961571 -19668549 - B3 SINE B2 0 216 1 1 1622 24 0 0 0 chr4 135961576 135961600 -19668520 + AT_rich Low_complexity Low_complexity 1 24 0 1 1622 1318 68 11 0 chr4 135961724 135961900 -19668220 + B2_Mm1t SINE B2 2 179 -14 1 1622 220 148 385 29 chr4 135961951 135962031 -19668089 + B2_Mm2 SINE B2 47 162 -33 1 1622 195 42 0 0 chr4 135962031 135962055 -19668065 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1622 220 148 385 29 chr4 135962055 135962078 -19668042 + B2_Mm2 SINE B2 163 187 -8 1 1622 510 246 114 8 chr4 135962234 135962365 -19667755 - RSINE1 SINE B4 -17 148 4 1 1622 413 207 0 0 chr4 135962386 135962468 -19667652 - ID4 SINE ID 0 83 2 1 1622 715 134 126 0 chr4 135962529 135962656 -19667464 + B1_Mus1 SINE Alu 2 144 -4 1 1622 234 0 0 0 chr4 135962656 135962682 -19667438 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1622 421 252 99 0 chr4 135962759 135962870 -19667250 - MIR SINE MIR -95 167 46 1 1622 1480 151 81 16 chr4 135963369 135963678 -19666442 + Lx5 LINE L1 6722 7050 0 1 1622 264 240 36 63 chr4 135964213 135964324 -19665796 + Charlie4a DNA MER1_type 127 234 -274 1 1622 1196 225 144 27 chr4 135964343 135964718 -19665402 + MTD LTR MaLR 1 419 0 1 1622 411 73 0 0 chr4 135964732 135964787 -19665333 + (CCA)n Simple_repeat Simple_repeat 1 55 0 1 1622 481 286 20 13 chr4 135964788 135964937 -19665183 - RSINE1 SINE B4 -12 153 4 1 1622 23 92 0 0 chr4 135965062 135965127 -19664993 + AT_rich Low_complexity Low_complexity 1 65 0 1 1622 1207 17 40 3 chr4 135965158 135965457 -19664663 + (TG)n Simple_repeat Simple_repeat 1 310 0 1 1622 435 244 8 92 chr4 135965457 135965588 -19664532 - RSINE1 SINE B4 -41 124 5 1 1622 663 167 56 28 chr4 135965712 135965832 -19664288 + B1_Mus1 SINE Alu 3 120 -28 1 1622 381 43 0 0 chr4 135965832 135965879 -19664241 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1622 663 167 56 28 chr4 135965879 135965900 -19664220 + B1_Mus1 SINE Alu 121 148 0 1 1622 194 150 25 0 chr4 135965901 135965941 -19664179 + GA-rich Low_complexity Low_complexity 4 44 0 1 1622 345 250 89 10 chr4 135965967 135966068 -19664052 + B1F2 SINE Alu 3 111 -38 1 1622 982 193 15 5 chr4 135966049 135966247 -19663873 - ID_B1 SINE B4 -24 200 1 1 1622 193 366 116 49 chr4 135966371 135966595 -19663525 + MIRb SINE MIR 29 267 -1 1 1622 238 258 0 0 chr4 135966796 135966856 -19663264 - MIR SINE MIR -131 145 86 1 1622 1637 151 11 7 chr4 135967049 135967336 -19662784 + Lx4A LINE L1 6756 7043 -15 1 1622 420 20 0 0 chr4 135967337 135967386 -19662734 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1 1622 418 279 9 0 chr4 135967743 135967854 -19662266 + RSINE1 SINE B4 54 165 0 1 1622 277 221 27 7 chr4 135967854 135968000 -19662120 + (CA)n Simple_repeat Simple_repeat 1 149 0 1 1622 359 220 11 11 chr4 135968044 135968219 -19661901 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1622 231 61 0 0 chr4 135968225 135968258 -19661862 + (CCAA)n Simple_repeat Simple_repeat 3 35 0 1 1622 263 210 133 68 chr4 135968952 135969087 -19661033 + B1F SINE Alu 6 141 -8 1 1622 317 162 15 0 chr4 135969153 135969221 -19660899 + (CATA)n Simple_repeat Simple_repeat 4 72 0 1 1622 716 160 26 71 chr4 135969279 135969434 -19660686 - B1_Mur1 SINE Alu 0 149 2 1 1622 640 163 68 23 chr4 135969581 135969713 -19660407 + B1_Mur1 SINE Alu 10 147 -2 1 1622 218 105 26 0 chr4 135969815 135969853 -19660267 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 1 1622 332 205 66 13 chr4 135969889 135969982 -19660138 - BC1_Mm scRNA scRNA -55 97 1 1 1622 347 217 60 0 chr4 135970521 135970604 -19659516 + ID_B1 SINE B4 83 170 -54 1 1622 207 173 39 0 chr4 135970880 135970932 -19659188 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 1 1622 764 236 0 37 chr4 135970947 135971136 -19658984 + B3A SINE B2 2 183 -15 1 1622 837 149 58 52 chr4 135971953 135972144 -19657976 - B2_Mm1a SINE B2 0 193 2 1 1622 237 132 0 0 chr4 135972379 135972417 -19657703 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1622 272 169 108 40 chr4 135972417 135972491 -19657629 - ID_B1 SINE B4 0 224 146 1 1622 257 236 22 0 chr4 135972856 135972945 -19657175 + T-rich Low_complexity Low_complexity 6 96 0 1 1622 219 36 0 0 chr4 135972956 135972984 -19657136 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1622 1050 89 0 14 chr4 135972984 135973122 -19656998 - B1_Mus1 SINE Alu -10 138 1 1 1622 811 79 499 7 chr4 135973123 135973327 -19656793 - ORR1A3 LTR MaLR -41 285 1 1 1622 182 260 20 20 chr4 135973401 135973452 -19656668 - MIR SINE MIR -86 122 72 1 1622 354 247 30 40 chr4 135973775 135973876 -19656244 - PB1D10 SINE Alu -16 101 2 1 1622 554 321 98 49 chr4 135973957 135974363 -19655757 + MER31A LTR ERV1 33 458 -27 1 1622 679 264 71 0 chr4 135974482 135974679 -19655441 + ID_B1 SINE B4 5 215 -9 1 1622 474 169 0 0 chr4 135974679 135974768 -19655352 + (CAGT)n Simple_repeat Simple_repeat 4 92 0 1 1622 456 274 41 2 chr4 135975584 135975728 -19654392 - MIR SINE MIR -118 150 2 1 1622 194 0 0 37 chr4 135976195 135976222 -19653898 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 1 1622 396 192 9 19 chr4 135976542 135976648 -19653472 + CT-rich Low_complexity Low_complexity 3 107 0 1 1622 491 248 35 0 chr4 135976652 135976765 -19653355 - PB1D10 SINE Alu 0 117 1 1 1622 557 235 76 32 chr4 135976765 135976838 -19653282 - ID SINE ID -143 81 2 1 1622 21 0 0 0 chr4 135978407 135978428 -19651692 + GC_rich Low_complexity Low_complexity 1 21 0 1 1622 293 303 13 0 chr4 135978582 135978658 -19651462 + CT-rich Low_complexity Low_complexity 2 78 0 1 1622 693 217 104 21 chr4 135978677 135978870 -19651250 - ID_B1 SINE B4 -5 219 11 1 1622 324 0 0 0 chr4 135978907 135978943 -19651177 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1622 355 307 7 28 chr4 135979547 135979688 -19650432 + L1M5 LINE L1 2349 2486 -3660 1 1622 591 62 0 0 chr4 135979796 135979876 -19650244 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1622 264 322 196 4 chr4 135980003 135980274 -19649846 + L2a LINE L2 3099 3421 -5 1 1622 355 280 102 0 chr4 135981110 135981267 -19648853 + MIRc SINE MIR 77 249 -19 1 1622 234 0 0 0 chr4 135981403 135981429 -19648691 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1622 230 348 21 21 chr4 135981523 135981617 -19648503 + MIRb SINE MIR 105 198 -70 1 1622 1191 164 4 72 chr4 135981717 135981953 -19648167 + URR1B DNA MER1_type 1 220 -5 1 1622 229 346 93 0 chr4 135982573 135982755 -19647365 + L2 LINE L2 2170 2368 -1051 1 1622 457 179 69 0 chr4 135983102 135983212 -19646908 + PB1D7 SINE Alu 2 120 0 1 1622 208 239 0 21 chr4 135983214 135983261 -19646859 + GA-rich Low_complexity Low_complexity 3 48 0 1 1622 396 0 0 0 chr4 135983268 135983312 -19646808 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1622 227 163 23 0 chr4 135983332 135983375 -19646745 - ID4 SINE ID -15 68 25 1 1622 921 209 55 20 chr4 135983568 135983768 -19646352 + ID_B1 SINE B4 1 207 -17 1 1622 236 240 87 16 chr4 135984042 135984122 -19645998 + ID SINE ID 2 84 -208 1 1622 302 192 232 0 chr4 135984122 135984221 -19645899 + RSINE1 SINE B4 2 123 -42 1 1622 300 279 52 43 chr4 135984254 135984370 -19645750 + B1F2 SINE Alu 1 117 -32 1 1622 234 0 0 0 chr4 135984448 135984474 -19645646 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1622 822 101 101 0 chr4 135984474 135984603 -19645517 - B1_Mus1 SINE Alu -6 142 1 1 1622 191 257 236 9 chr4 135984723 135984829 -19645291 - L2a LINE L2 -3 3423 3294 1 1622 594 253 12 41 chr4 135985157 135985326 -19644794 + B4A SINE B4 7 170 -122 1 1622 451 333 65 7 chr4 135985363 135985517 -19644603 + B4 SINE B4 130 292 0 1 1622 318 243 88 26 chr4 135985959 135986073 -19644047 - MIRb SINE MIR -129 139 19 1 1622 277 349 82 7 chr4 135986431 135986578 -19643542 + MIR3 SINE MIR 34 191 -17 1 1622 217 213 0 0 chr4 135986624 135986671 -19643449 + C-rich Low_complexity Low_complexity 1 47 0 1 1622 350 214 172 10 chr4 135986958 135987057 -19643063 - PB1D10 SINE Alu -2 115 1 1 1622 453 121 0 0 chr4 135987501 135987584 -19642536 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1622 392 204 57 0 chr4 135987598 135987686 -19642434 - PB1D7 SINE Alu -15 105 13 1 1622 180 339 17 0 chr4 135988140 135988199 -19641921 - MER5B DNA MER1_type -22 156 97 1 1622 220 254 75 0 chr4 135988259 135988326 -19641794 - ID4 SINE ID -11 72 1 1 1622 1120 54 0 20 chr4 135988333 135988344 -19641776 - B1_Mus2 SINE Alu 0 147 138 1 1622 681 13 0 0 chr4 135988344 135988422 -19641698 + (TTTTG)n Simple_repeat Simple_repeat 3 80 0 1 1622 1120 54 0 20 chr4 135988422 135988560 -19641560 - B1_Mus2 SINE Alu -10 137 1 1 1622 478 260 14 7 chr4 135988571 135988718 -19641402 - B1F SINE Alu 0 149 2 1 1622 1106 61 0 13 chr4 135988754 135988903 -19641217 - B1_Mus2 SINE Alu 0 147 1 1 1622 272 313 52 30 chr4 135988957 135989092 -19641028 - MIR3 SINE MIR -48 160 23 1 1622 583 257 56 41 chr4 135989132 135989327 -19640793 - B3A SINE B2 0 198 1 1 1622 408 191 84 11 chr4 135989775 135989870 -19640250 + B1F2 SINE Alu 47 148 -1 1 1622 786 261 175 55 chr4 135989880 135990103 -19640017 - MER44D DNA MER2_type -209 496 219 1 1622 423 0 0 0 chr4 135990103 135990150 -19639970 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1622 786 261 175 55 chr4 135990150 135990344 -19639776 - MER44D DNA MER2_type -487 218 29 1 1622 1163 205 18 22 chr4 135990491 135990765 -19639355 - Lx4B LINE L1 -4 7054 6782 1 1622 1097 88 0 0 chr4 135991011 135991159 -19638961 + B1_Mus1 SINE Alu 1 148 0 1 1622 725 116 182 0 chr4 135991199 135991320 -19638800 - B1_Mur2 SINE Alu -6 143 1 1 1622 309 109 0 0 chr4 135991336 135991382 -19638738 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1 1622 802 181 0 39 chr4 135991414 135991556 -19638564 - B1_Mur3 SINE Alu 0 149 13 1 1622 2284 58 3 119 chr4 135991556 135991926 -19638194 - ORR1A2 LTR MaLR 0 327 1 1 1622 802 181 0 39 chr4 135991926 135991938 -19638182 - B1_Mur3 SINE Alu -137 12 1 1 1622 770 200 56 21 chr4 135991937 135992135 -19637985 - B3A SINE B2 -2 193 1 1 1622 534 122 0 0 chr4 135993064 135993171 -19636949 + (TC)n Simple_repeat Simple_repeat 1 107 0 1 1622 417 123 0 0 chr4 135993248 135993313 -19636807 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1622 643 287 74 5 chr4 135993330 135993519 -19636601 + ID_B1 SINE B4 2 203 -21 1 1622 720 0 0 0 chr4 135993524 135993604 -19636516 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 1 1622 604 279 18 91 chr4 135993626 135993847 -19636273 + B4A SINE B4 82 286 -6 1 1622 311 217 0 14 chr4 135993857 135993927 -19636193 + ID4_ SINE ID 5 73 -10 1 1622 701 191 64 0 chr4 135994325 135994466 -19635654 + B1_Mur4 SINE Alu 1 150 0 1 1622 441 151 21 41 chr4 135995444 135995541 -19634579 + B1F2 SINE Alu 48 142 -7 1 1622 768 22 0 0 chr4 135995590 135995680 -19634440 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1 1622 180 250 0 0 chr4 135995710 135995758 -19634362 + CT-rich Low_complexity Low_complexity 1 48 0 1 1622 566 281 7 14 chr4 135995758 135995899 -19634221 - ID_B1 SINE B4 -1 223 84 1 1622 389 164 15 0 chr4 135995905 135995972 -19634148 - B1_Mur2 SINE Alu 0 149 82 1 1622 1144 113 62 0 chr4 135996009 135996165 -19633955 + B2_Mm1t SINE B2 2 158 -35 1 1622 252 0 0 0 chr4 135996165 135996193 -19633927 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 1622 1144 113 62 0 chr4 135996193 135996213 -19633907 + B2_Mm1t SINE B2 159 188 -5 1 1622 1112 98 5 118 chr4 135996281 135996501 -19633619 + B2_Mm2 SINE B2 1 195 0 1 1622 643 154 106 0 chr4 135996703 135996826 -19633294 - B1_Mur2 SINE Alu 0 149 14 1 1622 367 284 97 28 chr4 135996706 135996851 -19633269 - B4 SINE B4 -69 223 69 1 1622 279 0 0 0 chr4 135996857 135996888 -19633232 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1622 1152 69 0 0 chr4 135996888 135997033 -19633087 - B1_Mus1 SINE Alu -3 145 1 1 1622 445 298 0 0 chr4 135997082 135997196 -19632924 + ID_B1 SINE B4 108 221 -3 1 1622 247 333 10 40 chr4 135997406 135997506 -19632614 - MamRep564 Unknown Unknown -203 154 58 1 1622 201 108 0 0 chr4 135998208 135998245 -19631875 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1622 244 284 51 163 chr4 136000365 136000622 -19629498 - B4A SINE B4 0 292 65 1 1622 468 160 117 70 chr4 136000837 136000965 -19629155 + RSINE1 SINE B4 3 136 -29 2 1622 267 247 70 12 chr4 136001042 136001128 -19628992 + BC1_Mm scRNA scRNA 1 91 -61 3 1622 187 253 172 21 chr4 136001151 136001244 -19628876 + MIR SINE MIR 47 153 -109 4 1622 1161 82 0 0 chr4 136001292 136001439 -19628681 + B1_Mus2 SINE Alu 1 147 0 5 1622 637 159 67 74 chr4 136002077 136002226 -19627894 + B1_Mur2 SINE Alu 1 148 -1 6 1622 789 118 0 8 chr4 136002337 136002457 -19627663 - PB1D9 SINE Alu 0 120 2 7 1622 213 39 0 0 chr4 136002463 136002489 -19627631 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1622 246 32 0 0 chr4 136002495 136002526 -19627594 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1622 703 225 0 14 chr4 136002530 136002674 -19627446 - RSINE1 SINE B4 -23 142 1 1 1622 504 275 8 8 chr4 136002735 136002867 -19627253 + B1F SINE Alu 18 149 0 1 1622 634 241 7 20 chr4 136002870 136003018 -19627102 + B1_Mur1 SINE Alu 3 148 -1 1 1622 1344 47 0 0 chr4 136003091 136003261 -19626859 - L1_Mus1 LINE L1 0 6567 6398 1 1622 345 326 33 11 chr4 136003273 136003456 -19626664 - L1M4 LINE L1 -552 5622 5436 1 1622 795 40 0 0 chr4 136003738 136003839 -19626281 + B1_Mm SINE Alu 35 135 -12 1 1622 842 54 9 0 chr4 136003840 136003952 -19626168 + (GAA)n Simple_repeat Simple_repeat 2 114 0 1 1622 259 311 8 85 chr4 136003991 136004121 -19625999 - RSINE1 SINE B4 -2 163 44 1 1622 1245 34 7 0 chr4 136004185 136004331 -19625789 + B1_Mus1 SINE Alu 2 148 0 1 1622 908 236 20 0 chr4 136004383 136004578 -19625542 - B3 SINE B2 -13 203 5 1 1622 473 231 9 18 chr4 136004593 136004703 -19625417 - PB1D10 SINE Alu -8 109 1 2 1622 267 276 102 22 chr4 136004760 136004897 -19625223 + L2a LINE L2 3279 3426 0 2 1622 216 0 0 0 chr4 136005222 136005246 -19624874 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1622 284 216 26 39 chr4 136005363 136005440 -19624680 + B1F1 SINE Alu 63 138 -11 2 1622 444 51 0 0 chr4 136005440 136005499 -19624621 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1622 764 185 0 0 chr4 136005506 136005641 -19624479 + B1_Mur3 SINE Alu 3 137 -12 2 1622 369 0 0 0 chr4 136005641 136005682 -19624438 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2 1622 369 243 0 0 chr4 136005707 136005781 -19624339 + PB1D10 SINE Alu 38 111 -6 2 1622 875 244 20 5 chr4 136005805 136006007 -19624113 + ID_B1 SINE B4 1 205 -19 2 1622 806 91 0 8 chr4 136006009 136006131 -19623989 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 2 1622 236 257 14 28 chr4 136006141 136006213 -19623907 + ID4_ SINE ID 2 72 -11 3 1622 204 40 0 0 chr4 136006215 136006240 -19623880 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 1622 1095 77 0 27 chr4 136006543 136006689 -19623431 + B1_Mus2 SINE Alu 1 142 -5 3 1622 245 186 68 0 chr4 136006720 136006779 -19623341 + PB1D9 SINE Alu 57 119 -1 3 1622 189 0 0 0 chr4 136006781 136006802 -19623318 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 3 1622 949 141 7 7 chr4 136006979 136007129 -19622991 + B1_Mur4 SINE Alu 1 150 0 3 1622 194 83 56 0 chr4 136007132 136007168 -19622952 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1622 477 228 9 47 chr4 136007182 136007288 -19622832 - PB1 SINE Alu -25 102 1 3 1622 290 308 0 0 chr4 136007322 136007400 -19622720 - ID4 SINE ID -3 80 3 3 1622 190 269 119 0 chr4 136007589 136007656 -19622464 + L2c LINE L2 3278 3352 -35 3 1622 235 279 38 12 chr4 136007673 136007753 -19622367 - MIR SINE MIR 0 262 181 4 1622 348 235 209 26 chr4 136007972 136008125 -19621995 + B4 SINE B4 106 286 -6 4 1622 450 0 0 0 chr4 136008148 136008198 -19621922 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1622 764 88 9 0 chr4 136008483 136008597 -19621523 + (TTTTC)n Simple_repeat Simple_repeat 3 117 0 4 1622 1633 36 5 0 chr4 136008598 136008790 -19621330 - B2_Mm1t SINE B2 0 193 1 4 1622 240 343 39 10 chr4 136009195 136009298 -19620822 - MIRb SINE MIR -68 200 95 4 1622 303 28 0 0 chr4 136009407 136009443 -19620677 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1622 714 159 47 8 chr4 136009443 136009570 -19620550 - B1_Mm SINE Alu -13 134 3 4 1622 909 133 0 0 chr4 136009763 136009898 -19620222 - B1_Mus1 SINE Alu -13 135 1 4 1622 1022 159 5 27 chr4 136010088 136010275 -19619845 + URR1A DNA MER1_type 1 183 -43 4 1622 598 254 16 0 chr4 136010291 136010413 -19619707 - B1_Mur1 SINE Alu -25 124 1 5 1622 780 169 222 23 chr4 136010435 136010611 -19619509 - B3 SINE B2 -5 211 1 5 1622 22 0 0 0 chr4 136011268 136011290 -19618830 + GC_rich Low_complexity Low_complexity 1 22 0 5 1622 435 106 0 0 chr4 136011884 136011950 -19618170 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1622 273 292 48 32 chr4 136012003 136012126 -19617994 + MIRc SINE MIR 23 152 -116 5 1622 370 302 26 8 chr4 136012154 136012271 -19617849 + RSINE1 SINE B4 47 165 0 5 1622 2631 70 0 0 chr4 136012364 136012691 -19617429 - ORR1A2 LTR MaLR 0 327 1 5 1622 1421 79 16 0 chr4 136013166 136013356 -19616764 + B2_Mm1a SINE B2 1 193 0 5 1622 182 128 26 0 chr4 136013362 136013401 -19616719 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1622 337 258 10 40 chr4 136013430 136013531 -19616589 - B4A SINE B4 -5 287 190 5 1622 387 0 0 0 chr4 136013557 136013600 -19616520 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1622 598 114 132 0 chr4 136013601 136013715 -19616405 - B1_Mus2 SINE Alu -12 135 7 6 1622 374 278 13 83 chr4 136013659 136013816 -19616304 - B4A SINE B4 -145 147 2 5 1622 995 132 6 0 chr4 136013839 136014013 -19616107 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 6 1622 251 194 56 69 chr4 136014029 136014101 -19616019 - ID4_ SINE ID -11 72 2 6 1622 222 189 35 70 chr4 136014529 136014586 -19615534 - ID SINE ID -149 75 21 6 1622 265 291 13 0 chr4 136014765 136014844 -19615276 + BC1_Mm scRNA scRNA 14 93 -59 6 1622 310 215 0 0 chr4 136014923 136014988 -19615132 + L4 LINE RTE 1779 1843 -186 6 1622 399 306 37 104 chr4 136015398 136015697 -19614423 + B4A SINE B4 14 292 0 6 1622 620 279 53 27 chr4 136015773 136015998 -19614122 - MLT1J1 LTR MaLR -153 291 61 6 1622 382 316 76 8 chr4 136016192 136016310 -19613810 + B4A SINE B4 108 233 -59 6 1622 254 208 0 30 chr4 136016326 136016425 -19613695 + T-rich Low_complexity Low_complexity 1 96 0 7 1622 845 36 0 0 chr4 136016439 136016549 -19613571 - L1Md_A LINE L1 -9 6573 6464 7 1622 467 226 133 0 chr4 136016549 136016670 -19613450 + B3A SINE B2 22 157 -41 7 1622 423 0 0 0 chr4 136016670 136016717 -19613403 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1622 315 0 0 0 chr4 136016717 136016751 -19613369 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1622 358 283 61 30 chr4 136016751 136016793 -19613327 + B2_Mm2 SINE B2 146 190 -5 7 1622 1070 150 10 46 chr4 136016799 136016995 -19613125 + B2_Mm2 SINE B2 1 189 -6 7 1622 623 262 47 141 chr4 136017120 136017332 -19612788 - B4A SINE B4 -8 284 97 7 1622 697 162 65 14 chr4 136017332 136017470 -19612650 - B1_Mus2 SINE Alu -1 146 2 7 1622 623 262 47 141 chr4 136017470 136017555 -19612565 - B4A SINE B4 -196 96 15 7 1622 566 71 12 0 chr4 136018188 136018272 -19611848 + (CA)n Simple_repeat Simple_repeat 1 85 0 7 1622 314 302 42 0 chr4 136018935 136019031 -19611089 + MIRb SINE MIR 29 128 -140 7 1622 406 200 127 0 chr4 136020386 136020496 -19609624 + MLT2B1 LTR ERVL 13 136 -384 8 1622 321 26 0 0 chr4 136020560 136020598 -19609522 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1622 312 279 53 18 chr4 136020869 136020982 -19609138 - PB1D10 SINE Alu 0 117 1 8 1622 304 242 0 0 chr4 136021417 136021483 -19608637 + ID SINE ID 5 70 -154 8 1622 504 0 0 0 chr4 136021484 136021540 -19608580 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1622 769 151 7 14 chr4 136021593 136021734 -19608386 - B1_Mus1 SINE Alu -2 146 7 8 1622 240 279 0 131 chr4 136021656 136021755 -19608365 - MT2B LTR ERVL -361 240 155 8 1622 414 339 58 18 chr4 136021766 136021937 -19608183 - MIRb SINE MIR -62 206 29 8 1622 194 233 17 0 chr4 136022619 136022679 -19607441 + T-rich Low_complexity Low_complexity 4 64 0 8 1622 1055 90 13 0 chr4 136022679 136022835 -19607285 + (TCTCC)n Simple_repeat Simple_repeat 3 160 0 8 1622 450 0 0 0 chr4 136022835 136022885 -19607235 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 9 1622 213 121 0 0 chr4 136023202 136023235 -19606885 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 9 1622 372 204 0 0 chr4 136023240 136023310 -19606810 - ID2 SINE ID -9 74 5 9 1622 237 279 0 0 chr4 136023480 136023541 -19606579 - ID_B1 SINE B4 -9 215 155 9 1622 605 168 35 0 chr4 136023605 136023718 -19606402 + B1_Mus2 SINE Alu 24 140 -7 9 1622 24 0 0 0 chr4 136023741 136023765 -19606355 + AT_rich Low_complexity Low_complexity 1 24 0 9 1622 1376 81 21 5 chr4 136023779 136023966 -19606154 - B2_Mm2 SINE B2 -5 190 1 9 1622 785 254 54 0 chr4 136023968 136024153 -19605967 - B3 SINE B2 -17 199 5 9 1622 873 168 0 7 chr4 136024167 136024311 -19605809 - B1_Mur2 SINE Alu -1 148 6 9 1622 296 277 33 78 chr4 136024303 136024393 -19605727 - B1F2 SINE Alu -63 86 1 9 1622 731 260 13 0 chr4 136024393 136024472 -19605648 - ID SINE ID -143 81 1 9 1622 359 184 98 80 chr4 136024566 136024678 -19605442 - PB1D9 SINE Alu -6 114 1 1 1622 205 341 34 62 chr4 136025178 136025356 -19604764 - MIR3 SINE MIR -12 196 24 1 1622 50 75 0 0 chr4 136026153 136026259 -19603861 + GC_rich Low_complexity Low_complexity 1 106 0 1 1622 418 283 81 35 chr4 136027551 136027723 -19602397 - B3A SINE B2 -18 180 1 1 1622 298 302 68 45 chr4 136027872 136028004 -19602116 - MIRb SINE MIR -127 141 7 1 1622 734 119 191 0 chr4 136028856 136028982 -19601138 - B1_Mur4 SINE Alu 0 150 1 1 1622 840 149 249 6 chr4 136029013 136029182 -19600938 - B3 SINE B2 -6 210 1 1 1622 23 0 0 0 chr4 136029609 136029632 -19600488 + AT_rich Low_complexity Low_complexity 1 23 0 1 1622 180 241 130 0 chr4 136029697 136029751 -19600369 - MIRb SINE MIR -96 172 112 1 1622 1029 101 0 7 chr4 136029846 136029985 -19600135 - B1_Mus2 SINE Alu -8 139 2 1 1622 371 209 0 0 chr4 136030269 136030336 -19599784 - ID_B1 SINE B4 -2 222 156 1 1622 216 292 0 0 chr4 136030432 136030480 -19599640 - ID4 SINE ID -33 50 3 1 1622 229 143 0 45 chr4 136030520 136030564 -19599556 - RLTR25A LTR ERVK -520 583 542 1 1622 246 301 43 0 chr4 136030699 136030792 -19599328 - B4A SINE B4 -168 124 28 1 1622 23 0 0 0 chr4 136030807 136030830 -19599290 + AT_rich Low_complexity Low_complexity 1 23 0 1 1622 373 149 207 0 chr4 136030900 136030987 -19599133 - B1_Mm SINE Alu -9 138 34 1 1622 34 0 0 0 chr4 136031235 136031269 -19598851 + AT_rich Low_complexity Low_complexity 1 34 0 1 1622 846 123 7 42 chr4 136031331 136031475 -19598645 - B1_Mus2 SINE Alu 0 147 9 1 1622 471 292 91 45 chr4 136031589 136031743 -19598377 + RSINE1 SINE B4 5 165 0 1 1622 824 189 14 0 chr4 136031915 136032058 -19598062 + B1_Mur2 SINE Alu 5 149 0 1 1622 589 239 87 0 chr4 136032072 136032210 -19597910 - RSINE1 SINE B4 -6 159 10 1 1622 450 262 49 92 chr4 136032255 136032419 -19597701 - RSINE1 SINE B4 -6 159 3 1 1622 481 301 37 11 chr4 136032506 136032694 -19597426 - B3A SINE B2 -5 193 1 1 1622 516 280 133 35 chr4 136032854 136033080 -19597040 - B4A SINE B4 -41 251 4 1 1622 1513 53 37 0 chr4 136033279 136033466 -19596654 - B2_Mm2 SINE B2 -1 194 1 1 1622 228 278 170 43 chr4 136033803 136033897 -19596223 + PB1D10 SINE Alu 12 117 0 1 1622 632 300 78 64 chr4 136033901 136034201 -19595919 + B4 SINE B4 12 281 -11 1 1622 964 222 116 60 chr4 136034223 136034427 -19595693 + B4A SINE B4 2 228 -64 1 1622 536 269 7 41 chr4 136034427 136034574 -19595546 + B1_Mur1 SINE Alu 1 142 -7 1 1622 964 222 116 60 chr4 136034574 136034637 -19595483 + B4A SINE B4 229 284 -8 1 1622 648 214 210 17 chr4 136034759 136034935 -19595185 + B3 SINE B2 1 210 -6 1 1622 1065 75 6 70 chr4 136035096 136035254 -19594866 + B1_Mus1 SINE Alu 1 148 0 1 1622 180 0 0 0 chr4 136035260 136035280 -19594840 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1622 1324 87 12 0 chr4 136035493 136035666 -19594454 + B2_Mm1t SINE B2 2 176 -17 1 1622 277 167 0 36 chr4 136035747 136035803 -19594317 + B2_Mm2 SINE B2 47 100 -95 1 1622 22 35 0 0 chr4 136036092 136036121 -19593999 + AT_rich Low_complexity Low_complexity 1 29 0 1 1622 1134 57 0 0 chr4 136036241 136036400 -19593720 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1622 1008 45 8 0 chr4 136036833 136036966 -19593154 + B1_Mus1 SINE Alu 15 148 0 1 1622 1211 53 135 6 chr4 136037110 136037280 -19592840 - B2_Mm1t SINE B2 0 193 2 1 1622 544 152 171 0 chr4 136037288 136037393 -19592727 - B1_Mus2 SINE Alu -4 145 23 1 1622 350 237 29 88 chr4 136037313 136037415 -19592705 - MT2B LTR ERVL -344 257 162 1 1622 473 261 45 0 chr4 136037465 136037576 -19592544 - PB1D10 SINE Alu 0 117 2 1 1622 496 249 148 0 chr4 136037612 136037801 -19592319 + Tigger7 DNA MER2_type 2275 2491 0 1 1622 320 304 165 60 chr4 136037804 136038119 -19592001 - MARNA DNA Mariner -166 420 73 1 1622 1265 20 0 0 chr4 136038252 136038398 -19591722 + B1_Mus2 SINE Alu 2 147 0 1 1622 485 239 35 17 chr4 136038421 136038536 -19591584 + PB1D10 SINE Alu 1 117 0 1 1622 1318 81 31 36 chr4 136038597 136038790 -19591330 - B2_Mm2 SINE B2 -2 193 2 1 1622 2626 170 39 8 chr4 136039162 136039672 -19590448 - Lx9 LINE L1 -2 7642 7117 1 1622 922 196 0 23 chr4 136039672 136039844 -19590276 + Lx9 LINE L1 6756 6923 -721 1 1622 261 311 0 28 chr4 136040028 136040106 -19590014 - ID4_ SINE ID -62 90 15 1 1622 526 241 111 77 chr4 136040163 136040424 -19589696 - B4A SINE B4 -18 274 5 1 1622 250 163 0 0 chr4 136040680 136040723 -19589397 + ID4_ SINE ID 9 51 -32 1 1622 336 164 0 0 chr4 136040768 136040829 -19589291 + MTC LTR MaLR 1 61 -360 1 1622 886 122 0 45 chr4 136040834 136040989 -19589131 - B1_Mus1 SINE Alu 0 148 1 1 1622 1599 186 69 47 chr4 136040989 136041351 -19588769 + MTC LTR MaLR 49 418 -3 1 1622 534 16 0 0 chr4 136041351 136041414 -19588706 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1622 983 207 0 92 chr4 136042553 136042632 -19587488 - B3 SINE B2 -8 208 135 1 1622 1328 109 10 0 chr4 136042632 136042825 -19587295 + B2_Mm2 SINE B2 1 195 0 1 1622 983 207 0 92 chr4 136042825 136042974 -19587146 - B3 SINE B2 -82 134 1 1 1622 384 306 89 0 chr4 136043013 136043137 -19586983 - B1F1 SINE Alu -14 135 1 1 1622 29 0 0 0 chr4 136043265 136043294 -19586826 + AT_rich Low_complexity Low_complexity 1 29 0 1 1622 325 278 20 10 chr4 136043446 136043544 -19586576 + B4A SINE B4 178 276 -16 1 1622 513 253 72 44 chr4 136043737 136044065 -19586055 - RLTR20D LTR ERVK -12 566 1 1 1622 394 240 13 0 chr4 136044296 136044371 -19585749 - ID2 SINE ID -4 79 4 1 1622 813 219 20 15 chr4 136044399 136044594 -19585526 - B3A SINE B2 -1 197 2 1 1622 261 247 84 131 chr4 136044634 136044741 -19585379 - PB1D7 SINE Alu -2 125 24 1 1622 930 215 96 10 chr4 136044925 136045122 -19584998 - B3 SINE B2 -1 215 2 1 1622 191 398 11 0 chr4 136045316 136045409 -19584711 - MIRb SINE MIR -75 193 100 1 1622 180 111 0 0 chr4 136045460 136045487 -19584633 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1622 1101 131 135 5 chr4 136045617 136045817 -19584303 + URR1A DNA MER1_type 1 226 0 1 1622 1158 95 0 0 chr4 136045964 136046112 -19584008 + B1_Mus1 SINE Alu 1 148 0 1 1622 288 0 0 0 chr4 136046550 136046582 -19583538 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1622 533 276 128 0 chr4 136046597 136046753 -19583367 - B3A SINE B2 -22 176 1 1 1622 699 217 14 7 chr4 136047147 136047291 -19582829 - B1_Mur3 SINE Alu -2 147 3 1 1622 921 174 31 16 chr4 136047522 136047715 -19582405 - URR1A DNA MER1_type 0 226 31 1 1622 576 0 0 0 chr4 136047731 136047795 -19582325 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 1622 495 274 0 0 chr4 136047796 136047920 -19582200 - B3 SINE B2 -9 207 84 1 1622 1002 256 5 18 chr4 136047985 136048204 -19581916 + B3 SINE B2 1 216 0 1 1622 267 213 79 32 chr4 136048334 136048397 -19581723 + ID4 SINE ID 10 75 -8 1 1622 387 0 0 0 chr4 136048401 136048444 -19581676 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1622 1382 40 90 0 chr4 136048662 136048839 -19581281 - B2_Mm2 SINE B2 -2 193 1 1 1622 1645 31 11 0 chr4 136048853 136049044 -19581076 - B2_Mm1a SINE B2 0 193 1 1 1622 222 118 0 0 chr4 136049207 136049241 -19580879 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1622 540 261 8 0 chr4 136049271 136049390 -19580730 + B1F SINE Alu 1 120 -29 1 1622 340 316 36 22 chr4 136049390 136049410 -19580710 + ID_B1 SINE B4 82 222 -2 1 1622 339 317 148 11 chr4 136049550 136049732 -19580388 + MIR SINE MIR 54 264 -4 1 1622 618 252 48 0 chr4 136049984 136050131 -19579989 - ID_B1 SINE B4 -66 158 5 1 1622 3064 240 119 33 chr4 136050531 136051438 -19578682 - RMER1A Other Other 0 1030 82 1 1622 210 191 24 0 chr4 136051459 136051501 -19578619 + T-rich Low_complexity Low_complexity 3 45 0 1 1622 429 213 17 69 chr4 136051501 136051617 -19578503 - PB1D9 SINE Alu 0 120 11 1 1622 210 282 14 40 chr4 136051634 136051660 -19578460 + C-rich Low_complexity Low_complexity 50 73 0 1 1622 758 178 29 22 chr4 136051660 136051798 -19578322 - B1_Mur2 SINE Alu -10 139 1 1 1622 210 282 14 40 chr4 136051798 136051845 -19578275 + C-rich Low_complexity Low_complexity 2 49 0 1 1622 367 159 63 0 chr4 136051862 136051925 -19578195 - ID4 SINE ID -10 73 7 1 1622 874 184 58 21 chr4 136052041 136052230 -19577890 - L1MB7 LINE L1 -71 6113 5918 1 1622 1282 7 7 0 chr4 136052350 136052495 -19577625 + B1_Mus2 SINE Alu 2 147 0 1 1622 1250 85 22 38 chr4 136052505 136052689 -19577431 - B2_Mm2 SINE B2 -14 181 1 1 202 482 304 7 20 chr4 136052732 136052880 -19577240 - ID_B1 SINE B4 -9 215 70 1 1623 342 289 76 42 chr4 136052951 136053070 -19577050 - B1F2 SINE Alu -9 140 18 1 1623 336 241 299 43 chr4 136053088 136053390 -19576730 - L1M4 LINE L1 -409 5775 5397 1 1623 195 69 0 0 chr4 136053390 136053419 -19576701 + (CTAG)n Simple_repeat Simple_repeat 2 30 0 1 1623 1064 88 0 0 chr4 136053737 136053873 -19576247 + B1_Mus1 SINE Alu 2 137 -11 1 1623 1258 268 139 92 chr4 136053947 136054717 -19575403 + Charlie1a DNA MER1_type 252 1077 -378 1 1623 1064 71 50 0 chr4 136054717 136054857 -19575263 - B1_Mus1 SINE Alu 0 148 2 2 1623 1258 268 139 92 chr4 136054857 136055091 -19575029 + Charlie1a DNA MER1_type 1078 1296 -159 1 1623 752 175 64 21 chr4 136055091 136055231 -19574889 - B1_Mur4 SINE Alu 0 150 5 2 1623 1258 268 139 92 chr4 136055231 136055254 -19574866 + Charlie1a DNA MER1_type 1297 1313 -142 1 1623 1027 128 221 0 chr4 136055254 136055426 -19574694 - B3 SINE B2 -4 212 3 2 1623 1258 268 139 92 chr4 136055426 136055546 -19574574 + Charlie1a DNA MER1_type 1314 1455 0 1 1623 240 212 0 96 chr4 136056164 136056237 -19573883 - L1MC4 LINE L1 -800 7242 7177 2 1623 805 255 5 58 chr4 136056272 136056480 -19573640 - B3A SINE B2 0 198 2 2 1623 418 247 0 24 chr4 136056873 136056956 -19573164 + ID4 SINE ID 3 83 0 2 1623 948 179 144 21 chr4 136057144 136057332 -19572788 + B3 SINE B2 1 211 -5 2 1623 221 0 0 33 chr4 136057592 136057622 -19572498 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1623 353 70 18 0 chr4 136057649 136057706 -19572414 + (CAAAG)n Simple_repeat Simple_repeat 2 59 0 2 1623 1248 68 0 0 chr4 136057821 136057967 -19572153 + B1_Mus2 SINE Alu 2 147 0 2 1623 317 350 75 55 chr4 136058161 136058321 -19571799 - L2a LINE L2 -16 3410 3253 2 1623 380 274 29 10 chr4 136058321 136058424 -19571696 + PB1D9 SINE Alu 3 107 -13 2 1623 234 0 0 0 chr4 136058424 136058450 -19571670 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1623 317 350 75 55 chr4 136058450 136058636 -19571484 - L2a LINE L2 -174 3252 3057 2 1623 336 250 14 27 chr4 136058761 136058835 -19571285 - PB1D10 SINE Alu -41 76 4 2 1623 212 282 73 106 chr4 136058835 136058899 -19571221 - B4 SINE B4 -205 87 28 2 1623 347 290 40 10 chr4 136058876 136058977 -19571143 + PB1D7 SINE Alu 17 120 0 2 1623 1296 94 23 0 chr4 136059355 136059526 -19570594 - B2_Mm2 SINE B2 -19 176 2 2 1623 21 0 0 0 chr4 136059751 136059772 -19570348 + AT_rich Low_complexity Low_complexity 1 21 0 2 1623 216 0 0 0 chr4 136060852 136060876 -19569244 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1623 22 56 0 0 chr4 136060940 136060976 -19569144 + AT_rich Low_complexity Low_complexity 1 36 0 2 1623 321 300 40 113 chr4 136061030 136061154 -19568966 + B1F SINE Alu 6 120 -29 2 1623 216 0 0 0 chr4 136061163 136061187 -19568933 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1623 227 231 39 0 chr4 136061294 136061346 -19568774 + CT-rich Low_complexity Low_complexity 2 55 0 2 1623 210 214 24 0 chr4 136061352 136061394 -19568726 - B3A SINE B2 -155 43 1 2 1623 2628 128 53 36 chr4 136061486 136061900 -19568220 + MTC LTR MaLR 1 421 0 2 1623 34 0 0 0 chr4 136062312 136062346 -19567774 + AT_rich Low_complexity Low_complexity 1 34 0 2 1623 703 147 0 0 chr4 136062346 136062455 -19567665 - B1_Mm SINE Alu 0 147 39 2 1623 363 266 62 35 chr4 136062475 136062588 -19567532 - L2a LINE L2 -13 3413 3298 2 1623 1052 141 0 18 chr4 136062681 136062847 -19567273 + B2_Mm1t SINE B2 1 163 -30 2 1623 234 156 22 22 chr4 136062885 136062931 -19567189 - PB1D10 SINE Alu -9 108 63 2 1623 493 292 167 94 chr4 136062934 136063263 -19566857 - MTEb LTR MaLR -8 371 1 2 1623 436 196 181 21 chr4 136063282 136063376 -19566744 + RSINE1 SINE B4 3 111 -54 2 1623 1058 59 0 0 chr4 136063668 136063804 -19566316 - B1_Mus2 SINE Alu 0 147 12 2 1623 488 227 40 126 chr4 136063673 136063824 -19566296 - B4 SINE B4 -71 221 84 2 1623 459 245 32 138 chr4 136063703 136063892 -19566228 - MT2B LTR ERVL -337 264 96 2 1623 1258 112 28 0 chr4 136064071 136064226 -19565894 + B2_Mm2 SINE B2 2 161 -34 2 1623 249 33 0 0 chr4 136064226 136064256 -19565864 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1623 1258 112 28 0 chr4 136064256 136064279 -19565841 + B2_Mm2 SINE B2 162 184 -11 2 1623 618 302 14 0 chr4 136064311 136064450 -19565670 + B1_Mur2 SINE Alu 4 144 -5 2 1623 646 185 22 44 chr4 136065020 136065156 -19564964 + B1_Mur2 SINE Alu 15 147 -2 2 1623 967 194 44 35 chr4 136065855 136066058 -19564062 + B3 SINE B2 6 210 -6 2 1623 913 212 60 5 chr4 136066631 136066830 -19563290 + ID_B1 SINE B4 15 224 0 2 1623 21 36 0 0 chr4 136068311 136068339 -19561781 + AT_rich Low_complexity Low_complexity 1 28 0 2 1623 250 191 21 0 chr4 136068682 136068729 -19561391 + ZP3AR Satellite Satellite 38 85 -127 2 1623 339 252 62 53 chr4 136068688 136068801 -19561319 + BC1_Mm scRNA scRNA 3 116 -36 2 1623 2228 150 192 6 chr4 136068802 136069563 -19560557 + RMER1A Other Other 96 1030 0 2 1623 1077 94 35 23 chr4 136069757 136069931 -19560189 - B2_Mm2 SINE B2 0 195 20 2 1623 258 279 125 12 chr4 136070112 136070192 -19559928 - PB1D10 SINE Alu 0 117 29 2 1623 21 71 0 0 chr4 136070662 136070704 -19559416 + AT_rich Low_complexity Low_complexity 1 42 0 2 1623 22 0 0 0 chr4 136070870 136070892 -19559228 + AT_rich Low_complexity Low_complexity 1 22 0 2 1623 497 252 126 0 chr4 136070900 136071027 -19559093 - ID_B1 SINE B4 -4 220 78 2 1623 234 51 0 93 chr4 136071027 136071070 -19559050 - PB1D10 SINE Alu 0 117 79 2 1623 265 221 38 25 chr4 136071123 136071202 -19558918 - ID4_ SINE ID -2 81 2 2 1623 230 250 66 32 chr4 136071220 136071328 -19558792 - PB1 SINE Alu -8 141 35 2 1623 228 303 45 90 chr4 136071328 136071367 -19558753 - ID_B1 SINE B4 0 199 76 2 1623 584 216 110 53 chr4 136071445 136071680 -19558440 - L1M5 LINE L1 -643 5801 5551 2 1623 184 0 97 0 chr4 136071680 136071711 -19558409 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1623 1047 94 0 0 chr4 136071735 136071873 -19558247 + B1_Mm SINE Alu 10 147 0 2 1623 2859 164 125 33 chr4 136072056 136072670 -19557450 - RMER19B LTR ERVK -12 890 220 2 1623 190 369 48 0 chr4 136073129 136073213 -19556907 - MIRb SINE MIR -175 93 6 2 1623 1909 93 95 20 chr4 136073645 136073941 -19556179 - ORR1A3 LTR MaLR -8 318 1 2 1623 246 294 204 37 chr4 136073959 136074337 -19555783 + L2 LINE L2 1933 2373 -1046 2 1623 362 337 194 25 chr4 136074349 136075189 -19554931 - L2a LINE L2 -29 3397 2410 2 1623 29 0 0 0 chr4 136075314 136075343 -19554777 + AT_rich Low_complexity Low_complexity 1 29 0 2 1623 839 249 72 5 chr4 136075352 136075546 -19554574 - B3 SINE B2 -9 207 1 2 1623 474 18 0 0 chr4 136075647 136075702 -19554418 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1623 1252 54 0 0 chr4 136076414 136076561 -19553559 + B1_Mm SINE Alu 1 147 0 2 1623 461 301 131 0 chr4 136077590 136077773 -19552347 - MIRb SINE MIR -10 258 52 2 1623 975 48 0 263 chr4 136078380 136078578 -19551542 + B1_Mm SINE Alu 2 147 0 2 1623 561 55 0 0 chr4 136078578 136078651 -19551469 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 2 1623 237 236 152 0 chr4 136078824 136078883 -19551237 + ID SINE ID 16 82 -210 2 1623 873 256 49 25 chr4 136079099 136079303 -19550817 + ID_B1 SINE B4 1 209 -15 2 1623 369 0 0 0 chr4 136079314 136079355 -19550765 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1623 345 274 122 9 chr4 136079482 136079589 -19550531 + B1F SINE Alu 10 128 -21 2 1623 1087 42 224 0 chr4 136079606 136079749 -19550371 - B2_Mm2 SINE B2 -19 176 2 2 1623 183 264 18 36 chr4 136079931 136079986 -19550134 + L2b LINE L2 3322 3375 0 2 1623 477 114 38 0 chr4 136080113 136080192 -19549928 + B1_Mm SINE Alu 66 147 0 2 1623 241 313 0 117 chr4 136080555 136080649 -19549471 - L2b LINE L2 -5 3370 3288 2 1623 314 254 0 16 chr4 136080693 136080757 -19549363 + tRNA-Ala-GCY_ tRNA tRNA 13 75 0 2 1623 600 239 91 91 chr4 136081061 136081259 -19548861 + B3A SINE B2 1 198 0 2 1623 541 253 355 49 chr4 136081360 136081647 -19548473 - MTE2b LTR MaLR -4 375 1 2 1623 477 325 16 8 chr4 136081748 136081872 -19548248 - PB1 SINE Alu 0 127 3 2 1623 943 176 7 0 chr4 136081906 136082048 -19548072 + B1_Mur3 SINE Alu 1 143 -6 2 1623 234 239 84 0 chr4 136082065 136082136 -19547984 - L1MB8 LINE L1 -13 6165 6089 2 1623 3792 40 51 9 chr4 136082689 136083143 -19546977 - L1_Mus1 LINE L1 0 6567 6095 2 1623 304 299 13 13 chr4 136083226 136083304 -19546816 - ID SINE ID -145 79 2 2 1623 372 349 91 34 chr4 136083489 136083872 -19546248 + L2 LINE L2 2284 2688 -731 2 1623 2033 171 123 10 chr4 136084076 136084490 -19545630 - RLTR12A LTR ERVK -107 461 1 2 1623 12702 245 96 102 chr4 136084540 136085916 -19544204 - MYSERV-int LTR ERVK -44 6506 5193 2 1623 1556 58 21 0 chr4 136085916 136086104 -19544016 - B2_Mm2 SINE B2 -2 193 2 2 1623 12702 245 96 102 chr4 136086104 136087050 -19543070 - MYSERV-int LTR ERVK -1358 5192 4277 2 1623 1174 63 21 0 chr4 136087050 136087192 -19542928 - B1_Mm SINE Alu -2 145 1 2 1623 12702 245 96 102 chr4 136087192 136088585 -19541535 - MYSERV-int LTR ERVK -2274 4276 2844 2 1623 1119 67 0 7 chr4 136088585 136088720 -19541400 + B1_Mus1 SINE Alu 5 138 -10 2 1623 12702 245 96 102 chr4 136088720 136090082 -19540038 - MYSERV-int LTR ERVK -3707 2843 1459 2 1623 1189 57 0 0 chr4 136090354 136090494 -19539626 + B1_Mus2 SINE Alu 1 140 -7 2 1623 2150 186 159 16 chr4 136090545 136091042 -19539078 - RLTR12A LTR ERVK 0 568 1 2 1623 388 208 42 0 chr4 136091048 136091120 -19539000 - PB1D9 SINE Alu -38 82 8 2 1623 360 237 43 0 chr4 136091126 136091219 -19538901 - L1MC1 LINE L1 -204 6129 6033 2 1623 1330 235 106 18 chr4 136091244 136091664 -19538456 - L1MC1 LINE L1 -371 5962 5444 2 1623 441 250 35 18 chr4 136091674 136091788 -19538332 - PB1D7 SINE Alu -1 119 4 2 1623 1224 55 7 7 chr4 136091970 136092116 -19538004 - B1_Mus1 SINE Alu 0 148 3 2 1623 222 289 0 0 chr4 136092166 136092211 -19537909 - B1_Mus1 SINE Alu -91 57 13 2 1623 1616 260 216 18 chr4 136092243 136093210 -19536910 - L1MC1 LINE L1 -941 5205 4047 2 1623 1441 246 147 11 chr4 136093229 136093760 -19536360 - L1MC1 LINE L1 -2262 3884 3282 2 1623 818 50 0 0 chr4 136094123 136094222 -19535898 - LSU-rRNA_Hsa rRNA rRNA -2 5033 4935 2 1623 414 0 0 0 chr4 136094353 136094399 -19535721 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1623 522 0 0 0 chr4 136094399 136094456 -19535664 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 3 1623 477 276 118 20 chr4 136094505 136094708 -19535412 - Lx9 LINE L1 -312 7332 7110 3 1623 1186 214 151 24 chr4 136094844 136095175 -19534945 - MTE2a LTR MaLR -4 375 3 3 1623 536 243 119 26 chr4 136095408 136095727 -19534393 + MLT1A1 LTR MaLR 1 408 0 3 1623 1210 173 29 5 chr4 136100028 136100237 -19529883 - B3 SINE B2 0 216 3 3 1623 1486 56 44 6 chr4 136100754 136100934 -19529186 - B2_Mm2 SINE B2 -8 187 1 3 1623 327 248 67 50 chr4 136102607 136102726 -19527394 + MIRc SINE MIR 28 148 -120 3 1623 258 227 76 0 chr4 136102775 136102841 -19527279 - ID4_ SINE ID -11 72 2 3 1623 308 156 0 0 chr4 136105439 136105484 -19524636 + B1_Mur2 SINE Alu 97 141 -8 3 1623 289 333 86 0 chr4 136105622 136105637 -19524483 + ID SINE ID 67 88 -136 3 1623 293 269 104 0 chr4 136105637 136105704 -19524416 + PB1D10 SINE Alu 1 74 -43 3 1623 227 79 26 0 chr4 136105720 136105758 -19524362 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1623 448 200 42 0 chr4 136105964 136106059 -19524061 + B3A SINE B2 1 99 -99 3 1623 630 213 108 103 chr4 136106264 136106458 -19523662 + B3A SINE B2 4 198 0 3 1623 27 62 0 0 chr4 136106463 136106511 -19523609 + AT_rich Low_complexity Low_complexity 1 48 0 3 1623 501 329 27 34 chr4 136107396 136107544 -19522576 - B3 SINE B2 -68 148 2 3 1623 270 0 0 0 chr4 136110733 136110763 -19519357 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1623 2006 5 0 0 chr4 136111322 136111536 -19518584 + L1Md_A LINE L1 6369 6582 0 3 1623 576 213 278 52 chr4 136111576 136111749 -19518371 - B3 SINE B2 -4 212 1 3 1623 244 269 12 71 chr4 136112660 136112744 -19517376 + ID4 SINE ID 2 80 -3 3 1623 723 193 0 43 chr4 136112815 136112956 -19517164 - B1_Mus2 SINE Alu -12 135 1 3 1623 297 310 0 33 chr4 136113251 136113341 -19516779 - PB1D10 SINE Alu -28 89 3 3 1623 273 128 0 0 chr4 136113469 136113516 -19516604 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1623 445 225 57 29 chr4 136115525 136115630 -19514490 - PB1D10 SINE Alu -9 108 1 3 1623 578 249 87 48 chr4 136116610 136116817 -19513303 - B3 SINE B2 0 216 2 3 1623 180 0 0 0 chr4 136119139 136119159 -19510961 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1623 606 250 142 19 chr4 136120373 136120585 -19509535 + B4A SINE B4 55 292 0 3 1623 582 232 0 0 chr4 136120734 136120846 -19509274 - PB1D9 SINE Alu -6 114 3 3 1623 320 107 0 51 chr4 136120994 136121053 -19509067 + B1_Mur4 SINE Alu 95 150 0 3 1623 255 265 0 0 chr4 136121193 136121242 -19508878 - PB1 SINE Alu -64 63 15 3 1623 817 102 0 38 chr4 136121371 136121503 -19508617 - B1_Mur2 SINE Alu -1 148 22 3 1623 370 246 39 124 chr4 136121372 136121525 -19508595 - B4 SINE B4 -69 223 84 3 1623 1046 196 15 0 chr4 136122035 136122239 -19507881 + B3 SINE B2 3 209 -7 3 1623 351 234 27 36 chr4 136123138 136123249 -19506871 + RLTR20B3 LTR ERVK 468 577 0 3 1623 217 266 37 37 chr4 136124787 136124869 -19505251 + ID4 SINE ID 2 83 0 3 1623 305 261 0 165 chr4 136124928 136125061 -19505059 + MT2B LTR ERVL 154 264 -337 3 1623 840 122 0 0 chr4 136124968 136125091 -19505029 + B1_Mus1 SINE Alu 21 143 -5 3 1623 726 170 47 54 chr4 136125558 136125707 -19504413 + B1_Mur4 SINE Alu 3 150 0 3 1623 247 250 35 7 chr4 136125997 136126138 -19503982 + (TCTG)n Simple_repeat Simple_repeat 4 148 0 3 1623 288 0 0 0 chr4 136126153 136126185 -19503935 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 3 1623 28 0 0 0 chr4 136127150 136127178 -19502942 + AT_rich Low_complexity Low_complexity 1 28 0 3 1623 630 226 90 12 chr4 136127577 136127743 -19502377 + B3A SINE B2 2 180 -18 3 1623 324 239 0 68 chr4 136127906 136127999 -19502121 + ID4 SINE ID 11 98 -54 3 1623 23 0 0 0 chr4 136128260 136128283 -19501837 + AT_rich Low_complexity Low_complexity 1 23 0 3 1623 327 25 0 0 chr4 136128809 136128849 -19501271 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 3 1623 491 288 23 0 chr4 136129290 136129422 -19500698 - ID_B1 SINE B4 -8 216 82 3 1623 759 212 39 11 chr4 136129446 136129627 -19500493 + B2_Mm2 SINE B2 2 187 -8 3 1623 372 261 26 18 chr4 136131428 136131541 -19498579 - PB1D10 SINE Alu 0 117 4 3 1623 210 37 0 0 chr4 136131778 136131805 -19498315 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1623 1206 41 0 0 chr4 136131805 136131950 -19498170 - B1_Mus2 SINE Alu -2 145 1 3 1623 723 167 79 14 chr4 136132287 136132427 -19497693 - B1_Mur4 SINE Alu -1 149 1 3 1623 241 125 25 0 chr4 136132490 136132530 -19497590 + ID4 SINE ID 3 43 -40 3 1623 227 216 39 0 chr4 136132530 136132541 -19497579 + ID SINE ID 3 55 -169 3 1623 359 246 38 69 chr4 136132683 136132814 -19497306 + B3A SINE B2 68 194 -4 3 1623 1212 41 7 0 chr4 136136042 136136188 -19493932 + B1_Mus1 SINE Alu 2 148 0 3 1623 1511 11 6 0 chr4 136136191 136136368 -19493752 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 3 1623 188 227 23 0 chr4 136136868 136136912 -19493208 + L3 LINE CR1 4430 4474 -15 3 1623 249 57 0 0 chr4 136138457 136138492 -19491628 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1623 580 193 26 91 chr4 136139602 136139756 -19490364 - B1_Mur2 SINE Alu 0 149 6 3 1623 312 345 36 9 chr4 136140652 136140763 -19489357 + PB1D10 SINE Alu 1 114 -3 3 1623 483 45 0 0 chr4 136140769 136140836 -19489284 + B1_Mus1 SINE Alu 2 68 -80 3 1623 324 70 0 0 chr4 136140868 136140911 -19489209 + Lx4B LINE L1 6444 6486 -572 3 1623 342 257 46 37 chr4 136141247 136141356 -19488764 + RSINE1 SINE B4 27 136 -29 3 1623 827 116 125 65 chr4 136141377 136141561 -19488559 + B2_Mm2 SINE B2 1 195 0 3 1623 495 223 83 0 chr4 136141634 136141755 -19488365 + B1_Mur2 SINE Alu 17 147 -2 3 1623 231 143 0 20 chr4 136141766 136141816 -19488304 + A-rich Low_complexity Low_complexity 5 53 0 3 1623 2867 200 120 119 chr4 136143173 136144188 -19485932 + RMER1B Other Other 51 1066 0 3 1623 216 0 0 0 chr4 136144631 136144655 -19485465 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1623 720 135 24 0 chr4 136145044 136145170 -19484950 - B1_Mur4 SINE Alu -6 144 16 3 1623 275 222 126 92 chr4 136145080 136145199 -19484921 - MT2B LTR ERVL -344 257 135 3 1623 315 224 71 43 chr4 136146460 136146600 -19483520 + RLTR23 LTR ERV1 287 430 0 3 1623 21 0 0 0 chr4 136147044 136147065 -19483055 + AT_rich Low_complexity Low_complexity 1 21 0 3 1623 550 175 52 9 chr4 136147571 136147686 -19482434 - PB1D9 SINE Alu 0 120 1 3 1623 1116 68 0 40 chr4 136147718 136147870 -19482250 + B1_Mus1 SINE Alu 3 148 0 3 1623 189 0 0 0 chr4 136147870 136147891 -19482229 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1623 202 118 29 0 chr4 136148024 136148058 -19482062 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1623 645 271 68 32 chr4 136148096 136148317 -19481803 - B4A SINE B4 -18 274 46 3 1623 310 237 187 41 chr4 136149404 136149527 -19480593 + B1F SINE Alu 1 141 -8 3 1623 3630 184 53 49 chr4 136150167 136151040 -19479080 + Lx3C LINE L1 6099 6997 0 3 1623 254 288 50 0 chr4 136151280 136151360 -19478760 - B4A SINE B4 -23 269 186 3 1623 1070 99 0 0 chr4 136151604 136151745 -19478375 - B1_Mus1 SINE Alu -7 141 1 3 1623 229 217 21 17 chr4 136151786 136151855 -19478265 - B3 SINE B2 -69 129 59 3 1623 1349 100 11 0 chr4 136151938 136152128 -19477992 + B2_Mm1t SINE B2 2 193 0 3 1623 636 106 0 0 chr4 136152128 136152222 -19477898 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 3 1623 247 291 115 26 chr4 136152296 136152409 -19477711 + B4A SINE B4 47 169 -123 3 1623 1201 41 7 0 chr4 136152462 136152608 -19477512 + B1_Mm SINE Alu 1 147 0 3 1623 225 273 12 94 chr4 136152643 136152728 -19477392 + B4A SINE B4 215 292 0 3 1623 270 244 132 11 chr4 136152934 136153025 -19477095 + B4A SINE B4 191 292 0 3 1623 495 244 7 49 chr4 136153443 136153585 -19476535 + ID_B1 SINE B4 1 136 -88 3 1623 667 143 22 73 chr4 136153595 136153731 -19476389 + B1_Mur4 SINE Alu 22 150 0 3 1623 261 278 12 100 chr4 136153735 136153815 -19476305 + ID_B1 SINE B4 120 192 -32 3 1623 630 279 55 18 chr4 136153868 136154142 -19475978 + L1MB7 LINE L1 5362 5645 -539 3 1623 2739 151 157 7 chr4 136154144 136154744 -19475376 - RMER6C LTR ERVK 0 690 1 3 1623 1174 75 6 0 chr4 136154744 136154903 -19475217 + B2_Mm2 SINE B2 2 161 -34 3 1623 180 0 0 0 chr4 136154904 136154924 -19475196 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1623 1210 61 0 0 chr4 136155027 136155175 -19474945 + B1_Mus1 SINE Alu 1 148 0 3 1623 207 100 0 0 chr4 136155219 136155249 -19474871 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 1623 398 267 50 0 chr4 136155252 136155372 -19474748 + L1MB7 LINE L1 5893 6018 -166 3 1623 1110 88 0 7 chr4 136155393 136155541 -19474579 + B1_Mm SINE Alu 1 147 0 3 1623 21 0 0 0 chr4 136155637 136155658 -19474462 + AT_rich Low_complexity Low_complexity 1 21 0 3 1623 1369 71 11 5 chr4 136155661 136155845 -19474275 - B2_Mm1a SINE B2 -8 185 1 3 1623 189 74 0 0 chr4 136155898 136155925 -19474195 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 3 1623 801 141 0 0 chr4 136155958 136156086 -19474034 - B2_Mm2 SINE B2 -66 129 2 3 1623 299 295 0 11 chr4 136156718 136156807 -19473313 + PB1D10 SINE Alu 1 88 -29 3 1623 290 330 0 9 chr4 136156807 136156824 -19473296 + ID_B1 SINE B4 82 186 -38 4 1623 1242 75 98 0 chr4 136157047 136157221 -19472899 - B2_Mm2 SINE B2 -4 191 1 4 1623 234 0 0 0 chr4 136157355 136157381 -19472739 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1623 354 262 48 0 chr4 136157666 136157769 -19472351 + RSINE1 SINE B4 29 136 -29 4 1623 23 33 0 0 chr4 136157792 136157822 -19472298 + AT_rich Low_complexity Low_complexity 1 30 0 4 1623 309 51 0 0 chr4 136158444 136158483 -19471637 + (CCG)n Simple_repeat Simple_repeat 2 40 0 4 1623 1064 88 0 39 chr4 136159348 136159501 -19470619 - B1_Mus1 SINE Alu -1 147 1 4 1623 332 211 26 0 chr4 136159575 136159651 -19470469 - RLTR14 LTR ERV1 -1 381 304 4 1623 1384 50 39 17 chr4 136159656 136159837 -19470283 + B2_Mm2 SINE B2 1 185 -10 4 1623 1074 160 48 0 chr4 136159841 136160028 -19470092 - RLTR14 LTR ERV1 -184 198 3 4 1623 843 138 7 20 chr4 136160235 136160383 -19469737 + B1_Mus1 SINE Alu 2 147 -1 4 1623 787 241 65 12 chr4 136160717 136160965 -19469155 - MTE2a LTR MaLR -80 299 39 4 1623 798 90 8 8 chr4 136161133 136161256 -19468864 + B1_Mus2 SINE Alu 23 145 -2 4 1623 412 320 10 0 chr4 136161308 136161411 -19468709 - RSINE1 SINE B4 -21 144 41 4 1623 432 0 0 0 chr4 136161426 136161474 -19468646 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1623 338 0 24 0 chr4 136161493 136161535 -19468585 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1623 1168 69 0 0 chr4 136161535 136161679 -19468441 - B1_Mus2 SINE Alu -3 144 1 4 1623 522 170 11 0 chr4 136161679 136161773 -19468347 - ID_B1 SINE B4 -6 218 124 4 1623 302 239 0 0 chr4 136161793 136161860 -19468260 - L1M3 LINE L1 -455 5728 5662 4 1623 727 256 76 22 chr4 136161965 136162241 -19467879 + B4 SINE B4 1 291 -1 4 1623 228 300 0 0 chr4 136162251 136162321 -19467799 + ID4 SINE ID 29 98 -54 4 1623 393 234 36 9 chr4 136162431 136162543 -19467577 + PB1D10 SINE Alu 2 116 -1 4 1623 237 127 60 20 chr4 136162551 136162601 -19467519 - B2_Mm2 SINE B2 -152 46 2 4 1623 1879 130 20 51 chr4 136162613 136162963 -19467157 - MTC LTR MaLR -8 413 75 4 1623 3682 225 47 16 chr4 136163024 136163840 -19466280 + RMER1C Other Other 490 1330 -12 4 1623 265 56 0 0 chr4 136163840 136163876 -19466244 + B3 SINE B2 4 39 -177 4 1623 542 63 0 50 chr4 136163876 136163976 -19466144 + Lx LINE L1 6557 6651 -3 4 1623 192 97 0 0 chr4 136163979 136164010 -19466110 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1623 943 77 35 94 chr4 136164010 136164181 -19465939 + B2_Mm2 SINE B2 27 187 -8 4 1623 213 167 0 0 chr4 136164214 136164247 -19465873 + T-rich Low_complexity Low_complexity 10 42 0 4 1623 1203 61 0 0 chr4 136164247 136164394 -19465726 - B1_Mus2 SINE Alu 0 147 1 4 1623 3467 114 61 12 chr4 136164402 136164962 -19465158 - RLTR19-int LTR ERVK -4121 2016 1430 4 1623 236 290 0 0 chr4 136165011 136165080 -19465040 + (CCA)n Simple_repeat Simple_repeat 1 69 0 4 1623 807 128 102 29 chr4 136165836 136165973 -19464147 - B1_Mus1 SINE Alu -1 147 1 4 1623 183 341 0 11 chr4 136166192 136166281 -19463839 + MIRb SINE MIR 161 248 -20 4 1623 297 0 0 0 chr4 136166906 136166939 -19463181 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1623 429 308 8 15 chr4 136166956 136167088 -19463032 - MER20 DNA MER1_type -82 137 7 4 1623 726 176 222 6 chr4 136167096 136167267 -19462853 + B3 SINE B2 6 213 -3 4 1623 864 170 20 0 chr4 136167272 136167425 -19462695 + B3A SINE B2 1 156 -42 4 1623 652 212 33 27 chr4 136167402 136167552 -19462568 + B3 SINE B2 60 210 -6 4 1623 1090 80 7 0 chr4 136167609 136167746 -19462374 + B1_Mus1 SINE Alu 2 139 -9 4 1623 288 0 0 0 chr4 136167746 136167778 -19462342 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1623 661 269 34 19 chr4 136167788 136167993 -19462127 + B4A SINE B4 3 210 -82 4 1623 240 238 0 0 chr4 136168223 136168286 -19461834 + C-rich Low_complexity Low_complexity 1 63 0 4 1623 438 202 0 0 chr4 136168391 136168470 -19461650 - ID_B1 SINE B4 -6 218 140 4 1623 694 179 29 29 chr4 136168470 136168608 -19461512 + ID_B1 SINE B4 81 218 -6 4 1623 300 302 45 60 chr4 136168491 136168625 -19461495 - YREP_Mm Unknown Unknown -1519 293 162 4 1623 333 217 0 52 chr4 136169063 136169160 -19460960 - MLT1A1 LTR MaLR -4 404 313 4 1623 297 0 0 0 chr4 136169217 136169250 -19460870 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1623 504 0 0 0 chr4 136169250 136169305 -19460815 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1623 339 299 0 2 chr4 136169370 136169459 -19460661 + ID4_ SINE ID 10 97 -55 4 1623 554 269 6 86 chr4 136169466 136169629 -19460491 + RSINE1 SINE B4 15 164 -1 4 1623 838 292 58 86 chr4 136169696 136169912 -19460208 - MTD LTR MaLR -17 402 212 4 1623 573 203 148 0 chr4 136169912 136170040 -19460080 - B1_Mur2 SINE Alu -1 148 2 4 1623 838 292 58 86 chr4 136170040 136170183 -19459937 - MTD LTR MaLR -208 211 53 4 1623 544 274 45 25 chr4 136170209 136170366 -19459754 + B3A SINE B2 39 198 0 4 1623 212 179 0 0 chr4 136170498 136170537 -19459583 + T-rich Low_complexity Low_complexity 1 39 0 4 1623 958 144 249 0 chr4 136170538 136170711 -19459409 - B3 SINE B2 0 216 1 4 1623 1082 79 43 0 chr4 136170717 136170856 -19459264 - B1_Mus1 SINE Alu -1 147 3 4 1623 189 0 0 0 chr4 136171097 136171118 -19459002 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1623 1029 78 0 0 chr4 136171131 136171272 -19458848 + B1_Mus1 SINE Alu 8 148 0 4 1623 759 238 72 21 chr4 136171275 136171468 -19458652 + B3 SINE B2 1 203 -13 4 1623 239 239 0 0 chr4 136171470 136171516 -19458604 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 1623 979 200 10 26 chr4 136171543 136171738 -19458382 - B3 SINE B2 -23 193 2 4 1623 617 331 6 0 chr4 136171820 136171995 -19458125 + ID_B1 SINE B4 15 190 -34 4 1623 1501 63 21 0 chr4 136172107 136172297 -19457823 + B2_Mm2 SINE B2 2 195 0 4 1623 341 220 77 39 chr4 136172910 136173014 -19457106 + MLT1A1 LTR MaLR 292 399 -9 4 1623 374 368 37 9 chr4 136173025 136173242 -19456878 + L2 LINE L2 2801 3023 -396 4 1623 916 164 14 7 chr4 136173420 136173567 -19456553 + B1_Mur3 SINE Alu 1 148 -1 4 1623 418 222 30 45 chr4 136173567 136173699 -19456421 - B3A SINE B2 -2 196 67 4 1623 365 294 139 30 chr4 136173741 136173752 -19456368 - B4 SINE B4 -84 208 181 4 1623 598 152 61 0 chr4 136173752 136173851 -19456269 - B1_Mus1 SINE Alu -43 105 1 4 1623 365 294 139 30 chr4 136173851 136173906 -19456214 - B4 SINE B4 -84 180 26 4 1623 285 283 91 36 chr4 136174196 136174361 -19455759 + RMER2 LTR ERV1 367 540 -27 4 1623 4308 106 18 38 chr4 136174503 136175284 -19454836 - RMER17A LTR ERVK 0 751 1 4 1623 426 282 43 122 chr4 136175284 136175533 -19454587 - B4A SINE B4 -55 237 9 4 1623 339 265 67 25 chr4 136175544 136175664 -19454456 - B1F SINE Alu -7 142 18 4 1623 571 285 0 0 chr4 136175736 136175859 -19454261 + RSINE1 SINE B4 3 125 -40 4 1623 965 104 21 0 chr4 136175928 136176072 -19454048 + B1_Mur4 SINE Alu 2 148 -2 4 1623 224 340 105 29 chr4 136176211 136176420 -19453700 - MIR SINE MIR -14 248 24 4 1623 561 277 72 22 chr4 136176486 136176685 -19453435 + B3A SINE B2 1 192 -1 4 1623 366 23 0 0 chr4 136176708 136176751 -19453369 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1623 225 0 0 0 chr4 136176751 136176775 -19453345 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1623 696 218 3 7 chr4 136176806 136177123 -19452997 + (TG)n Simple_repeat Simple_repeat 1 315 0 4 1623 556 207 0 22 chr4 136177135 136177318 -19452802 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1623 715 205 0 0 chr4 136177872 136177994 -19452126 + RSINE1 SINE B4 5 126 -39 4 1623 236 260 123 0 chr4 136178753 136178826 -19451294 - MER81 DNA AcHobo -15 99 18 4 1623 906 215 80 5 chr4 136178939 136179140 -19450980 - B3 SINE B2 0 216 1 4 1623 492 299 37 18 chr4 136179622 136179840 -19450280 - L1ME1 LINE L1 -234 5945 5724 4 1623 873 310 80 11 chr4 136179858 136180122 -19449998 + B4A SINE B4 9 290 -2 4 1623 587 245 10 7 chr4 136180124 136180420 -19449700 + (CATA)n Simple_repeat Simple_repeat 1 297 0 4 1623 549 250 0 0 chr4 136180436 136180608 -19449512 + (CA)n Simple_repeat Simple_repeat 1 172 0 4 1623 184 314 35 11 chr4 136180729 136180816 -19449304 + MIRm SINE MIR 165 253 -23 4 1623 463 278 56 0 chr4 136180900 136181044 -19449076 - RMER15 LTR ERVL 0 575 424 4 1623 4409 133 63 78 chr4 136181187 136182093 -19448027 - RMER19B LTR ERVK -10 892 1 4 1623 414 244 129 29 chr4 136183020 136183159 -19446961 + RSINE1 SINE B4 2 154 -11 4 1623 904 147 0 27 chr4 136183228 136183375 -19446745 + B1_Mus1 SINE Alu 1 143 -5 4 1624 596 254 14 21 chr4 136183906 136184047 -19446073 + RSINE1 SINE B4 3 142 -23 4 1624 482 205 0 0 chr4 136184214 136184297 -19445823 + ID4 SINE ID 1 83 0 4 1624 1072 86 22 13 chr4 136184633 136184857 -19445263 + (TGGA)n Simple_repeat Simple_repeat 1 226 0 4 1624 716 196 20 20 chr4 136185357 136185503 -19444617 - B1_Mm SINE Alu -1 146 1 4 1624 507 214 0 0 chr4 136185535 136185624 -19444496 + B1F2 SINE Alu 21 109 -40 4 1624 1668 141 56 94 chr4 136185682 136186042 -19444078 - ORR1B1 LTR MaLR -8 386 41 4 1624 434 264 12 49 chr4 136186041 136186059 -19444061 + ID_B1 SINE B4 68 224 0 4 1624 865 159 7 0 chr4 136186059 136186204 -19443916 + B1_Mus1 SINE Alu 3 148 0 5 1624 1026 157 0 2 chr4 136186277 136186721 -19443399 + (CA)n Simple_repeat Simple_repeat 1 443 0 5 1624 450 0 0 0 chr4 136187590 136187640 -19442480 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1624 293 244 90 0 chr4 136187676 136187754 -19442366 - MIRb SINE MIR -135 133 49 5 1624 816 157 186 0 chr4 136187883 136188093 -19442027 - RLTR28 LTR ERVL 0 524 276 5 1624 1277 27 0 0 chr4 136188093 136188239 -19441881 + B1_Mus1 SINE Alu 2 147 -1 5 1624 1358 223 48 94 chr4 136188258 136188734 -19441386 - RLTR28 LTR ERVL -70 454 1 5 1624 307 293 250 39 chr4 136189261 136189417 -19440703 - B3A SINE B2 -6 192 4 5 1624 405 54 0 0 chr4 136189425 136189481 -19440639 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 5 1624 866 261 55 5 chr4 136189482 136189682 -19440438 - ID_B1 SINE B4 -12 212 3 5 1624 2693 99 27 0 chr4 136189850 136190252 -19439868 + MTC LTR MaLR 1 413 -8 5 1624 593 211 24 18 chr4 136190301 136190458 -19439662 - ID_B1 SINE B4 -16 276 113 5 1624 570 219 50 51 chr4 136190666 136190823 -19439297 + ID_B1 SINE B4 32 223 0 5 1624 1045 30 0 0 chr4 136190823 136190956 -19439164 + B1_Mus1 SINE Alu 10 142 -6 5 1624 549 0 0 0 chr4 136190958 136191019 -19439101 + (TAAAA)n Simple_repeat Simple_repeat 3 63 0 5 1624 521 258 114 0 chr4 136191299 136191431 -19438689 - RSINE1 SINE B4 -16 149 3 5 1624 216 209 75 75 chr4 136191876 136191969 -19438151 - MIR SINE MIR -86 122 30 5 1624 1029 133 76 22 chr4 136192001 136192185 -19437935 + B2_Mm2 SINE B2 1 194 -1 5 1624 1825 158 40 29 chr4 136192347 136192693 -19437427 - ORR1B1 LTR MaLR -2 392 43 5 1624 30 0 0 0 chr4 136193609 136193639 -19436481 + GC_rich Low_complexity Low_complexity 1 30 0 5 1624 271 318 11 0 chr4 136194627 136194715 -19435405 + ID_B1 SINE B4 69 157 -67 5 1624 224 217 33 16 chr4 136194827 136194888 -19435232 - ID SINE ID -159 65 4 5 1624 761 276 84 40 chr4 136194920 136195241 -19434879 - L1ME1 LINE L1 -115 6064 5730 5 1624 365 301 42 18 chr4 136195452 136195528 -19434592 - L1ME1 LINE L1 -577 5587 5511 5 1624 531 0 0 0 chr4 136195528 136195587 -19434533 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1624 365 301 42 18 chr4 136195587 136195676 -19434444 - L1ME1 LINE L1 -654 5510 5418 5 1624 756 237 10 64 chr4 136195809 136196012 -19434108 - ID_B1 SINE B4 -1 223 32 5 1624 483 248 90 54 chr4 136196084 136196250 -19433870 - B3A SINE B2 -11 187 16 5 1624 373 315 0 9 chr4 136196273 136196382 -19433738 - PB1D10 SINE Alu -8 109 2 5 1624 256 288 0 40 chr4 136196487 136196563 -19433557 - ID4_ SINE ID -10 73 1 5 1624 273 294 98 27 chr4 136196571 136196683 -19433437 - L1MD2 LINE L1 -1 6241 6122 5 1624 713 237 136 0 chr4 136196987 136197156 -19432964 + B3A SINE B2 1 192 -6 5 1624 883 71 16 0 chr4 136197177 136197304 -19432816 - B1_Mus1 SINE Alu -6 142 14 5 1624 1602 52 5 0 chr4 136197335 136197526 -19432594 - B2_Mm1a SINE B2 -1 192 1 5 1624 727 311 96 61 chr4 136197549 136197617 -19432503 - L1MD2 LINE L1 -419 5940 5877 5 1624 1339 51 56 22 chr4 136197617 136197796 -19432324 - B2_Mm2 SINE B2 -9 186 2 5 1624 727 311 96 61 chr4 136197796 136198180 -19431940 - L1MD2 LINE L1 -483 5876 5475 5 1624 270 0 0 0 chr4 136198180 136198210 -19431910 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1624 329 229 217 0 chr4 136198215 136198298 -19431822 - PB1D10 SINE Alu -16 101 1 5 1624 727 311 96 61 chr4 136198298 136198348 -19431772 - L1MD2 LINE L1 -888 5471 5414 5 1624 989 73 7 0 chr4 136198367 136198504 -19431616 - B1_Mus2 SINE Alu -1 146 9 5 1624 744 124 2 40 chr4 136198669 136198813 -19431307 + B1_Mus1 SINE Alu 9 149 0 5 1624 216 111 0 0 chr4 136198953 136198989 -19431131 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1624 1159 68 7 0 chr4 136199049 136199195 -19430925 - B1_Mus1 SINE Alu 0 148 2 5 1624 396 216 45 11 chr4 136199195 136199277 -19430843 - B4A SINE B4 -61 231 146 5 1624 180 0 0 0 chr4 136199277 136199297 -19430823 + (TCC)n Simple_repeat Simple_repeat 2 21 0 5 1624 396 186 44 655 chr4 136199297 136199315 -19430805 - B4A SINE B4 -146 146 129 5 1624 699 221 69 0 chr4 136199446 136199591 -19430529 - B3 SINE B2 -2 214 60 5 1624 245 340 52 0 chr4 136199615 136199630 -19430490 + B1_Mur1 SINE Alu 46 147 -2 5 1624 389 244 0 0 chr4 136199630 136199712 -19430408 + ID_B1 SINE B4 141 222 -2 5 1624 486 260 32 24 chr4 136199743 136199869 -19430251 + RSINE1 SINE B4 14 140 -25 5 1624 183 80 0 0 chr4 136199887 136199912 -19430208 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 1624 299 186 41 0 chr4 136199941 136200038 -19430082 + CT-rich Low_complexity Low_complexity 5 105 0 5 1624 508 249 234 31 chr4 136200128 136200389 -19429731 + ORR1D2 LTR MaLR 1 314 -56 5 1624 465 76 0 0 chr4 136200391 136200457 -19429663 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 5 1624 268 281 0 0 chr4 136200457 136200521 -19429599 + ORR1D2 LTR MaLR 296 359 0 5 1624 2769 194 98 33 chr4 136200707 136201678 -19428442 - MTC-int LTR MaLR -67 1191 1 5 1624 1605 196 6 124 chr4 136201678 136202155 -19427965 - MTC LTR MaLR 0 421 1 5 1624 583 231 16 0 chr4 136202711 136202832 -19427288 + RSINE1 SINE B4 4 126 -39 5 1624 335 347 36 100 chr4 136202869 136203119 -19427001 + ORR1E LTR MaLR 81 314 -45 5 1624 295 279 12 12 chr4 136204627 136204707 -19425413 + CT-rich Low_complexity Low_complexity 2 81 0 5 1624 1144 184 22 31 chr4 136206062 136206287 -19423833 + ID_B1 SINE B4 2 224 0 5 1624 1449 127 0 79 chr4 136206479 136206632 -19423488 + URR1B DNA MER1_type 5 156 -69 5 1624 1127 107 0 0 chr4 136206632 136206781 -19423339 + B1_Mur4 SINE Alu 1 149 -1 5 1624 1449 127 0 79 chr4 136206781 136206867 -19423253 + URR1B DNA MER1_type 157 225 0 5 1624 264 346 65 22 chr4 136207259 136207398 -19422722 - MIR3 SINE MIR -47 161 17 5 1624 996 239 5 5 chr4 136207714 136207916 -19422204 - ID_B1 SINE B4 -2 222 21 5 1624 291 114 0 0 chr4 136209091 136209135 -19420985 + (TCC)n Simple_repeat Simple_repeat 1 44 0 5 1624 681 93 0 0 chr4 136209678 136209785 -19420335 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 1624 311 196 18 0 chr4 136212392 136212448 -19417672 + URR1B DNA MER1_type 1 57 -168 5 1624 511 131 60 10 chr4 136212443 136212543 -19417577 + URR1B DNA MER1_type 121 225 0 5 1624 342 0 0 0 chr4 136212986 136213024 -19417096 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1624 336 48 0 0 chr4 136214137 136214179 -19415941 + (TGGGGG)n Simple_repeat Simple_repeat 3 44 0 5 1624 604 369 69 21 chr4 136214203 136214535 -19415585 + ORR1E LTR MaLR 1 348 -11 5 1624 221 236 77 0 chr4 136215103 136215169 -19414951 + L2b LINE L2 3020 3093 -333 5 1624 195 293 112 0 chr4 136216178 136216294 -19413826 + MIRc SINE MIR 23 151 -117 5 1624 380 346 7 15 chr4 136216332 136216467 -19413653 + MER117 DNA MER1_type 34 167 -30 5 1624 186 229 305 0 chr4 136217073 136217191 -19412929 + MIR3 SINE MIR 45 198 -10 5 1624 229 279 0 0 chr4 136217643 136217704 -19412416 + MER117 DNA MER1_type 7 67 -130 5 1624 820 258 20 68 chr4 136217840 136218090 -19412030 + B4A SINE B4 3 240 -52 5 1624 279 54 0 0 chr4 136218159 136218196 -19411924 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1624 1102 65 0 41 chr4 136218268 136218413 -19411707 + B1_Mus1 SINE Alu 1 139 -9 5 1624 257 0 0 29 chr4 136218413 136218447 -19411673 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 1624 201 162 0 0 chr4 136219367 136219404 -19410716 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5 1624 741 210 7 0 chr4 136219410 136219548 -19410572 - B1_Mus2 SINE Alu 0 147 9 5 1624 239 352 11 22 chr4 136219591 136219681 -19410439 + RSINE1 SINE B4 8 96 -69 5 1624 303 345 45 104 chr4 136219683 136219903 -19410217 + B4 SINE B4 83 289 -3 5 1624 388 263 143 92 chr4 136220099 136220371 -19409749 + B4 SINE B4 2 287 -5 5 1624 689 298 21 5 chr4 136220455 136220630 -19409490 + B3A SINE B2 1 178 -20 5 1624 222 118 0 0 chr4 136220630 136220664 -19409456 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1624 689 298 21 5 chr4 136220664 136220677 -19409443 + B3A SINE B2 179 192 -6 5 1624 1221 48 0 13 chr4 136220697 136220846 -19409274 + B1_Mus2 SINE Alu 1 147 0 5 1624 315 122 0 0 chr4 136220851 136220900 -19409220 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1624 214 321 24 12 chr4 136221188 136221270 -19408850 - MIRb SINE MIR 0 268 186 5 1624 390 21 0 0 chr4 136221390 136221437 -19408683 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1624 686 226 35 64 chr4 136221456 136221659 -19408461 - B3 SINE B2 0 216 20 5 1624 353 198 1 3 chr4 136221664 136221730 -19408390 + B3A SINE B2 97 163 -53 5 1624 243 0 0 0 chr4 136221730 136221757 -19408363 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1624 326 274 9 45 chr4 136221757 136221801 -19408319 + B3 SINE B2 164 202 -14 5 1624 359 240 0 26 chr4 136221852 136221929 -19408191 - ID4 SINE ID -4 79 5 5 1624 507 247 151 0 chr4 136221998 136222164 -19407956 - B3 SINE B2 -6 210 20 5 1624 331 250 132 8 chr4 136222602 136222723 -19407397 + ORR1E LTR MaLR 1 136 -223 5 1624 214 284 47 47 chr4 136223311 136223396 -19406724 + L2c LINE L2 3299 3383 -4 5 1624 349 240 13 0 chr4 136223756 136223831 -19406289 + MADE2 DNA Mariner 1 76 -4 5 1624 243 0 0 0 chr4 136224401 136224428 -19405692 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1624 1087 229 7 88 chr4 136224430 136224727 -19405393 - B4 SINE B4 -19 273 1 5 1624 251 353 9 47 chr4 136224962 136225069 -19405051 - MIR SINE MIR -75 133 31 5 1624 754 168 56 35 chr4 136225328 136225446 -19404674 + B1_Mm SINE Alu 3 117 -30 5 1624 630 0 0 0 chr4 136225446 136225516 -19404604 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1624 754 168 56 35 chr4 136225516 136225539 -19404581 + B1_Mm SINE Alu 118 147 0 5 1624 584 285 123 60 chr4 136225820 136226089 -19404031 - B4 SINE B4 -5 287 2 5 1624 968 191 111 5 chr4 136226103 136226292 -19403828 - B3 SINE B2 -5 211 3 5 1624 811 254 13 107 chr4 136226615 136226770 -19403350 + ID_B1 SINE B4 2 152 -72 5 1624 1235 34 0 7 chr4 136226770 136226916 -19403204 + B1_Mus1 SINE Alu 2 146 -2 6 1624 276 30 0 0 chr4 136226916 136226949 -19403171 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 6 1624 811 254 13 107 chr4 136226949 136227017 -19403103 + ID_B1 SINE B4 153 204 -20 5 1624 615 27 0 0 chr4 136227029 136227102 -19403018 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 1624 375 60 0 0 chr4 136227102 136227151 -19402969 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1624 546 242 119 13 chr4 136227152 136227378 -19402742 + L2 LINE L2 2657 2906 -513 6 1624 562 249 10 117 chr4 136227926 136228131 -19401989 + B3A SINE B2 1 183 -15 6 1624 360 0 0 0 chr4 136228136 136228176 -19401944 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1624 207 245 0 0 chr4 136228194 136228243 -19401877 + GA-rich Low_complexity Low_complexity 2 50 0 6 1624 210 234 0 0 chr4 136228239 136228286 -19401834 + (CAG)n Simple_repeat Simple_repeat 3 49 0 6 1624 274 308 110 18 chr4 136230840 136230949 -19399171 - MER117 DNA MER1_type 0 197 79 6 1624 621 228 12 134 chr4 136231993 136232165 -19397955 - ID_B1 SINE B4 0 224 74 6 1624 180 316 87 48 chr4 136232432 136232535 -19397585 - L2b LINE L2 -7 3368 3262 6 1624 235 263 48 57 chr4 136232583 136232688 -19397432 - Charlie4z DNA MER1_type -38 129 26 6 1624 182 37 37 0 chr4 136232920 136232947 -19397173 + (TGGGGG)n Simple_repeat Simple_repeat 6 33 0 6 1624 713 267 83 55 chr4 136233498 136233716 -19396404 - ID_B1 SINE B4 0 224 1 6 1624 550 282 52 111 chr4 136233736 136233964 -19396156 - B4 SINE B4 -2 290 85 6 1624 213 39 0 0 chr4 136233964 136233990 -19396130 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1624 550 282 52 111 chr4 136233990 136234068 -19396052 - B4 SINE B4 -208 84 2 6 1624 396 0 0 0 chr4 136234218 136234262 -19395858 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1624 806 83 8 0 chr4 136235060 136235180 -19394940 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 6 1624 503 212 68 17 chr4 136235184 136235322 -19394798 - ID_B1 SINE B4 -5 219 81 6 1624 324 343 84 24 chr4 136236415 136236887 -19393233 + L2b LINE L2 2649 3162 -225 6 1624 225 211 0 0 chr4 136237580 136237632 -19392488 + T-rich Low_complexity Low_complexity 1 52 0 6 1624 184 289 0 0 chr4 136237808 136237846 -19392274 - L2b LINE L2 -10 3365 3328 6 1624 456 19 0 0 chr4 136240320 136240373 -19389747 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1624 234 125 2 86 chr4 136240741 136240793 -19389327 - MIRm SINE MIR -151 125 70 6 1624 309 250 151 22 chr4 136241113 136241252 -19388868 - MIR SINE MIR -65 197 41 6 1624 207 347 55 31 chr4 136242294 136242550 -19387570 + L2b LINE L2 2931 3194 -232 6 1624 201 147 0 0 chr4 136242593 136242627 -19387493 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 6 1624 413 336 67 18 chr4 136242731 136242955 -19387165 + MLT1J LTR MaLR 70 304 -208 6 1624 1196 136 34 10 chr4 136243250 136243458 -19386662 - URR1B DNA MER1_type -12 213 1 6 1624 190 331 108 26 chr4 136243990 136244143 -19385977 + MIR3 SINE MIR 5 163 -45 6 1624 482 267 20 20 chr4 136244510 136244659 -19385461 + B1F1 SINE Alu 1 149 0 6 1624 229 297 75 45 chr4 136244812 136244946 -19385174 - MIRm SINE MIR -29 247 110 6 1624 22 0 0 0 chr4 136245160 136245182 -19384938 + GC_rich Low_complexity Low_complexity 1 22 0 6 1624 476 258 68 0 chr4 136245562 136245579 -19384541 + B1F SINE Alu 1 141 -8 6 1624 642 209 0 0 chr4 136245579 136245694 -19384426 + ID_B1 SINE B4 102 216 -8 6 1624 255 103 0 0 chr4 136245694 136245733 -19384387 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 6 1624 604 191 159 0 chr4 136247117 136247243 -19382877 - B1_Mur3 SINE Alu -1 148 3 6 1624 906 36 0 0 chr4 136247317 136247427 -19382693 + (TGG)n Simple_repeat Simple_repeat 1 110 0 6 1624 652 244 267 0 chr4 136248186 136248411 -19381709 - B4 SINE B4 -7 285 1 6 1624 231 246 53 0 chr4 136249419 136249476 -19380644 - ID4 SINE ID -19 64 5 6 1624 448 250 40 0 chr4 136249485 136249585 -19380535 - PB1D10 SINE Alu -1 116 13 6 1624 419 266 16 31 chr4 136250254 136250382 -19379738 - RSINE1 SINE B4 -37 128 3 6 1624 222 261 22 11 chr4 136250491 136250669 -19379451 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1624 351 257 28 0 chr4 136250672 136250781 -19379339 + (TATG)n Simple_repeat Simple_repeat 4 115 0 6 1624 936 216 115 19 chr4 136250785 136251045 -19379075 - B4A SINE B4 -1 291 7 6 1624 930 162 0 0 chr4 136251133 136251312 -19378808 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1624 927 161 0 0 chr4 136251323 136251503 -19378617 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1624 250 326 65 11 chr4 136252836 136253014 -19377106 + MIRb SINE MIR 15 199 -9 6 1624 854 292 89 11 chr4 136255272 136255626 -19374494 + L1MB7 LINE L1 5772 6151 -33 6 1624 714 24 0 0 chr4 136256560 136256644 -19373476 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1624 707 202 135 38 chr4 136257029 136257214 -19372906 - ID_B1 SINE B4 -21 203 1 6 1624 215 71 0 0 chr4 136257639 136257667 -19372453 + L2c LINE L2 3331 3358 -29 6 1624 210 344 49 55 chr4 136257775 136257938 -19372182 - MIRb SINE MIR 0 268 107 6 1624 483 63 0 0 chr4 136258058 136258121 -19371999 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1624 1011 135 0 7 chr4 136258123 136258272 -19371848 + B1_Mus1 SINE Alu 1 148 0 6 1624 185 222 0 0 chr4 136258288 136258324 -19371796 - MIRb SINE MIR -169 99 64 6 1624 285 330 29 19 chr4 136258936 136259041 -19371079 + MIRb SINE MIR 28 133 -135 6 1624 376 241 0 25 chr4 136259718 136259799 -19370321 - ID4_ SINE ID 0 83 5 6 1624 276 277 108 10 chr4 136259809 136259911 -19370209 - PB1D7 SINE Alu -6 114 3 6 1624 198 243 97 28 chr4 136259912 136259984 -19370136 - MIRc SINE MIR -110 158 82 6 1624 203 242 65 0 chr4 136260863 136260925 -19369195 - MIRb SINE MIR -80 188 123 6 1624 242 289 58 26 chr4 136261112 136261268 -19368852 - L2c LINE L2 -306 3081 2921 6 1624 482 245 3 23 chr4 136261519 136261864 -19368256 + G-rich Low_complexity Low_complexity 1 337 0 6 1624 232 204 0 41 chr4 136261875 136261972 -19368148 + G-rich Low_complexity Low_complexity 3 95 0 6 1624 243 311 22 22 chr4 136262146 136262238 -19367882 + L2c LINE L2 3024 3115 -272 6 1624 672 13 0 0 chr4 136263014 136263091 -19367029 + (TTTTA)n Simple_repeat Simple_repeat 2 78 0 6 1624 188 303 10 101 chr4 136263173 136263272 -19366848 - MIRc SINE MIR -87 181 92 6 1624 268 303 13 0 chr4 136263589 136263665 -19366455 + ID4_ SINE ID 7 83 0 6 1624 687 300 27 27 chr4 136263685 136263908 -19366212 + ID_B1 SINE B4 1 223 -1 6 1624 24 0 0 0 chr4 136263995 136264019 -19366101 + AT_rich Low_complexity Low_complexity 1 24 0 6 1624 203 279 36 48 chr4 136264601 136264684 -19365436 + L3 LINE CR1 3768 3849 -640 6 1624 221 361 60 6 chr4 136265149 136265316 -19364804 - L2c LINE L2 -212 3175 3000 6 1624 371 164 15 0 chr4 136265695 136265762 -19364358 + ID_B1 SINE B4 104 171 -53 6 1624 370 222 43 22 chr4 136265762 136265787 -19364333 + PB1D10 SINE Alu 23 116 -1 6 1624 205 139 0 44 chr4 136266399 136266444 -19363676 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1624 270 0 0 0 chr4 136266527 136266557 -19363563 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1624 197 33 33 0 chr4 136266671 136266701 -19363419 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1624 1122 73 0 0 chr4 136266701 136266838 -19363282 - B1_Mus1 SINE Alu -11 137 1 6 1624 717 244 5 59 chr4 136267099 136267286 -19362834 + B3A SINE B2 3 179 -19 6 1624 874 9 35 0 chr4 136267286 136267399 -19362721 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 6 1624 1062 273 51 11 chr4 136267413 136267687 -19362433 + B4 SINE B4 2 286 -6 6 1624 393 116 0 0 chr4 136267693 136267762 -19362358 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1624 206 271 43 0 chr4 136268539 136268609 -19361511 - MIRm SINE MIR -140 136 64 6 1624 299 244 9 0 chr4 136268664 136268779 -19361341 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 1624 571 330 4 92 chr4 136268792 136269019 -19361101 - B4 SINE B4 -4 288 82 6 1624 327 149 0 0 chr4 136269046 136269120 -19361000 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1624 342 45 0 0 chr4 136269120 136269164 -19360956 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1624 755 210 0 0 chr4 136269168 136269306 -19360814 - RSINE1 SINE B4 -17 148 11 6 1624 332 284 8 49 chr4 136269282 136269404 -19360716 - B4 SINE B4 -174 118 2 6 1624 311 263 80 29 chr4 136270056 136270161 -19359959 - PB1D10 SINE Alu -30 117 1 6 1624 213 357 0 0 chr4 136270099 136270169 -19359951 - B4A SINE B4 -145 147 78 6 1624 295 272 78 42 chr4 136270410 136270565 -19359555 + MIRb SINE MIR 45 207 -61 6 1624 356 241 11 11 chr4 136270664 136270752 -19359368 + PB1D10 SINE Alu 1 88 -29 6 1624 326 306 24 24 chr4 136270752 136270781 -19359339 + ID_B1 SINE B4 96 198 -26 6 1624 801 95 0 0 chr4 136270945 136271061 -19359059 + (GGAA)n Simple_repeat Simple_repeat 1 116 0 6 1624 900 221 48 19 chr4 136271072 136271280 -19358840 + B3 SINE B2 3 216 0 6 1624 642 144 19 0 chr4 136271283 136271387 -19358733 + B1_Mur3 SINE Alu 44 149 0 6 1624 291 183 83 0 chr4 136271428 136271488 -19358632 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 6 1624 603 139 0 0 chr4 136271576 136271705 -19358415 + (CA)n Simple_repeat Simple_repeat 2 130 0 6 1624 261 0 0 0 chr4 136271705 136271734 -19358386 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1624 734 122 0 7 chr4 136271734 136271882 -19358238 + (CA)n Simple_repeat Simple_repeat 1 148 0 6 1624 1059 163 4 2 chr4 136273392 136273878 -19356242 + (TCCA)n Simple_repeat Simple_repeat 1 487 0 7 1624 216 182 0 0 chr4 136273968 136274012 -19356108 + (CCCA)n Simple_repeat Simple_repeat 2 45 0 7 1624 822 81 0 0 chr4 136274015 136274139 -19355981 + (CA)n Simple_repeat Simple_repeat 1 124 0 7 1624 998 253 221 7 chr4 136274605 136274899 -19355221 + ORR1E LTR MaLR 1 357 -2 7 1624 1006 83 0 27 chr4 136275363 136275512 -19354608 + B1_Mur3 SINE Alu 3 147 -2 7 1624 531 0 0 0 chr4 136275658 136275717 -19354403 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1624 351 0 0 0 chr4 136275717 136275755 -19354365 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1624 534 299 91 35 chr4 136275756 136275954 -19354166 - ID_B1 SINE B4 -15 209 1 7 1624 497 267 0 17 chr4 136276984 136277102 -19353018 - ID_B1 SINE B4 -1 223 108 7 1624 209 315 0 0 chr4 136277915 136277969 -19352151 + GA-rich Low_complexity Low_complexity 4 57 0 7 1624 570 29 0 0 chr4 136278366 136278434 -19351686 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1624 255 31 0 0 chr4 136278593 136278625 -19351495 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1624 806 47 9 0 chr4 136278625 136278731 -19351389 + (GA)n Simple_repeat Simple_repeat 1 108 0 7 1624 726 156 8 0 chr4 136279115 136279237 -19350883 - B1_Mur4 SINE Alu -6 144 22 7 1624 399 41 0 0 chr4 136279518 136279567 -19350553 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1624 369 0 0 0 chr4 136279567 136279607 -19350513 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1624 401 247 0 33 chr4 136279617 136279709 -19350411 + PB1D10 SINE Alu 14 102 -15 7 1624 1035 203 40 0 chr4 136280039 136280241 -19349879 - B3 SINE B2 0 216 7 7 1624 195 42 0 0 chr4 136280277 136280301 -19349819 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1624 246 62 0 0 chr4 136280301 136280333 -19349787 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1624 278 275 44 112 chr4 136280359 136280519 -19349601 - B4A SINE B4 -142 150 2 7 1624 672 249 113 95 chr4 136280519 136280739 -19349381 - B4A SINE B4 -68 224 1 7 1624 259 279 42 75 chr4 136280745 136280865 -19349255 + MER58A DNA MER1_type 45 160 -64 7 1624 257 206 79 0 chr4 136281622 136281685 -19348435 - BC1_Mm scRNA scRNA -68 84 17 7 1624 883 224 97 54 chr4 136281733 136281992 -19348128 - B4A SINE B4 -21 271 2 7 1624 1009 214 27 18 chr4 136281994 136282213 -19347907 - ID_B1 SINE B4 -3 221 1 7 1624 808 181 13 46 chr4 136282331 136282464 -19347656 + B1_Mur3 SINE Alu 3 136 -13 7 1624 621 0 0 0 chr4 136282464 136282533 -19347587 + (CAAAC)n Simple_repeat Simple_repeat 5 73 0 7 1624 808 181 13 46 chr4 136282533 136282550 -19347570 + B1_Mur3 SINE Alu 137 148 -1 7 1624 249 351 59 7 chr4 136283165 136283317 -19346803 - L2c LINE L2 -151 3236 3077 7 1624 336 333 69 7 chr4 136283537 136283682 -19346438 + RSINE1 SINE B4 2 155 -10 7 1624 21 57 0 0 chr4 136283694 136283729 -19346391 + AT_rich Low_complexity Low_complexity 1 35 0 7 1624 380 288 67 27 chr4 136284402 136284441 -19345679 + MIRc SINE MIR 2 45 -223 7 1624 606 150 216 40 chr4 136284441 136284566 -19345554 - B1_Mur2 SINE Alu -2 147 1 7 1624 380 271 72 36 chr4 136284566 136284709 -19345411 + MIRc SINE MIR 46 190 -72 7 1624 450 0 0 0 chr4 136285191 136285241 -19344879 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1624 681 285 26 74 chr4 136285244 136285513 -19344607 - B4 SINE B4 -36 256 1 7 1624 363 60 0 0 chr4 136286828 136286878 -19343242 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1624 860 228 33 0 chr4 136286880 136287064 -19343056 - ID_B1 SINE B4 -12 212 23 7 1624 258 304 37 74 chr4 136287174 136287309 -19342811 + B4 SINE B4 43 172 -120 7 1624 330 80 0 0 chr4 136287452 136287502 -19342618 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1624 336 182 20 20 chr4 136288033 136288096 -19342024 + G-rich Low_complexity Low_complexity 4 66 0 7 1624 690 75 0 0 chr4 136288096 136288189 -19341931 + (GAA)n Simple_repeat Simple_repeat 3 95 0 7 1624 336 182 20 20 chr4 136288189 136288226 -19341894 + G-rich Low_complexity Low_complexity 67 103 0 7 1624 223 268 0 0 chr4 136289335 136289391 -19340729 + L2 LINE L2 2820 2875 -544 7 1624 1305 62 0 0 chr4 136290889 136291065 -19339055 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 7 1624 233 354 0 20 chr4 136291142 136291240 -19338880 + (TCCA)n Simple_repeat Simple_repeat 3 98 0 7 1624 229 279 16 0 chr4 136291432 136291493 -19338627 - L2c LINE L2 -229 3158 3097 7 1624 527 308 93 44 chr4 136292399 136292603 -19337517 + B4A SINE B4 13 226 -66 7 1624 297 0 0 0 chr4 136292703 136292736 -19337384 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1624 241 163 0 0 chr4 136293216 136293259 -19336861 - B3 SINE B2 -173 43 1 7 1624 830 233 124 19 chr4 136293522 136293742 -19336378 - ID_B1 SINE B4 -47 245 7 7 1624 286 209 14 29 chr4 136293751 136293820 -19336300 - B1F SINE Alu -67 82 15 7 1624 207 0 0 0 chr4 136294088 136294111 -19336009 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1624 303 265 0 0 chr4 136294686 136294788 -19335332 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1624 526 214 99 33 chr4 136294869 136294990 -19335130 - B1F2 SINE Alu -20 129 1 7 1624 212 253 23 81 chr4 136295974 136296060 -19334060 - MIRc SINE MIR -135 133 53 7 1624 337 269 81 0 chr4 136296527 136296669 -19333451 + MIRb SINE MIR 29 172 -90 7 1624 772 162 28 14 chr4 136297285 136297429 -19332691 + B1_Mur1 SINE Alu 1 146 -3 7 1624 202 286 0 74 chr4 136297488 136297609 -19332511 - L2c LINE L2 -256 3131 3020 7 1624 220 303 102 34 chr4 136297716 136297863 -19332257 - MIRb SINE MIR -92 176 20 7 1624 199 321 42 2 chr4 136298323 136298419 -19331701 + MIRm SINE MIR 80 172 -36 7 1624 209 258 16 30 chr4 136298975 136299057 -19331063 + MIRc SINE MIR 59 137 -139 7 1624 366 156 0 0 chr4 136299057 136299121 -19330999 + CT-rich Low_complexity Low_complexity 1 64 0 7 1624 535 263 70 13 chr4 136299459 136299617 -19330503 - MER2 DNA MER2_type -28 317 151 7 1624 307 304 137 0 chr4 136299799 136299901 -19330219 - Tigger5 DNA MER2_type -1 2405 2290 7 1624 317 338 123 18 chr4 136300559 136300722 -19329398 + MIRc SINE MIR 51 230 -38 7 1624 420 282 153 6 chr4 136300760 136300917 -19329203 + B3A SINE B2 1 180 -18 7 1624 510 17 0 0 chr4 136300951 136301010 -19329110 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 7 1624 1014 221 37 141 chr4 136301032 136301130 -19328990 + B4A SINE B4 1 85 -207 7 1624 1197 169 4 62 chr4 136301130 136301357 -19328763 + B3 SINE B2 3 216 0 7 1624 1014 221 37 141 chr4 136301357 136301584 -19328536 + B4A SINE B4 86 292 0 7 1624 438 286 99 71 chr4 136301625 136301816 -19328304 + ID_B1 SINE B4 8 211 -13 7 1624 204 40 0 0 chr4 136301816 136301841 -19328279 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 7 1624 438 286 99 71 chr4 136301841 136301860 -19328260 + ID_B1 SINE B4 212 224 0 7 1624 582 54 0 0 chr4 136302052 136302126 -19327994 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 7 1624 360 0 0 0 chr4 136302633 136302673 -19327447 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1624 225 291 67 10 chr4 136303553 136303657 -19326463 - MIR3 SINE MIR -31 177 68 7 1624 382 246 167 17 chr4 136304348 136304468 -19325652 + MIRb SINE MIR 38 175 -93 7 1624 785 218 16 120 chr4 136305210 136305460 -19324660 + ID_B1 SINE B4 1 224 0 7 1624 411 349 13 20 chr4 136306365 136306514 -19323606 + MIR SINE MIR 46 193 -69 7 1624 387 0 0 0 chr4 136306687 136306730 -19323390 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1624 197 65 32 0 chr4 136306977 136307008 -19323112 + (CGTG)n Simple_repeat Simple_repeat 1 32 0 7 1624 243 79 0 0 chr4 136307529 136307567 -19322553 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1624 210 273 119 20 chr4 136308107 136308123 -19321997 - PB1D9 SINE Alu 0 120 97 7 1624 213 39 0 0 chr4 136308123 136308149 -19321971 + (TTAGGG)n Simple_repeat Simple_repeat 2 27 0 7 1624 210 273 119 20 chr4 136308149 136308233 -19321887 - PB1D9 SINE Alu -24 96 11 7 1624 627 225 0 81 chr4 136308163 136308287 -19321833 - B4A SINE B4 -129 163 46 7 1624 601 267 162 109 chr4 136308287 136308644 -19321476 + MTE2a LTR MaLR 1 376 -3 7 1624 627 225 0 81 chr4 136308644 136308693 -19321427 - B4A SINE B4 -247 45 4 7 1624 258 105 0 0 chr4 136309294 136309332 -19320788 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 7 1624 201 300 111 12 chr4 136310645 136310726 -19319394 + L2c LINE L2 3268 3356 -31 7 1624 237 243 86 0 chr4 136310895 136310965 -19319155 - MLT2C1 LTR ERVL -126 271 196 7 1624 594 0 0 0 chr4 136312366 136312432 -19317688 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1624 288 0 0 0 chr4 136312432 136312463 -19317657 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1624 236 283 40 21 chr4 136314287 136314405 -19315715 - RSINE1 SINE B4 0 292 82 7 1624 287 306 0 0 chr4 136314543 136314605 -19315515 + B4A SINE B4 230 291 -1 7 1625 246 222 0 36 chr4 136315516 136315572 -19314548 + MIRc SINE MIR 83 136 -132 7 1625 948 189 183 0 chr4 136315625 136315805 -19314315 + B3 SINE B2 2 214 -2 7 1625 396 0 0 0 chr4 136315821 136315865 -19314255 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1625 1380 54 43 0 chr4 136315908 136316092 -19314028 - B2_Mm1a SINE B2 0 193 2 7 1625 301 177 46 46 chr4 136316171 136316236 -19313884 - PB1D10 SINE Alu -17 100 36 7 1625 816 227 0 35 chr4 136317324 136317493 -19312627 - RSINE1 SINE B4 0 165 3 7 1625 220 314 55 62 chr4 136317969 136318115 -19312005 + MIRb SINE MIR 4 148 -120 7 1625 405 0 0 0 chr4 136318368 136318413 -19311707 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1625 621 0 0 0 chr4 136318413 136318481 -19311639 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1625 683 278 138 5 chr4 136318876 136319093 -19311027 + B4A SINE B4 39 284 -8 7 1625 408 40 0 0 chr4 136319112 136319162 -19310958 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1625 582 201 82 7 chr4 136320228 136320352 -19309768 + ID_B1 SINE B4 80 214 -10 8 1625 194 0 39 0 chr4 136320352 136320378 -19309742 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1625 349 298 19 28 chr4 136320424 136320531 -19309589 + B1F1 SINE Alu 12 117 -32 8 1625 228 228 0 50 chr4 136320507 136320567 -19309553 + B1F1 SINE Alu 65 121 -28 8 1625 1222 61 0 0 chr4 136320791 136320938 -19309182 + B1_Mus1 SINE Alu 2 148 0 8 1625 191 202 285 0 chr4 136321036 136321122 -19308998 - MIRm SINE MIR -122 146 35 8 1625 221 216 0 0 chr4 136321537 136321574 -19308546 + G-rich Low_complexity Low_complexity 1 37 0 8 1625 269 269 56 56 chr4 136321661 136321803 -19308317 + Charlie12 DNA MER1_type 7 148 -2725 8 1625 233 302 105 0 chr4 136321789 136321875 -19308245 - RMER30 DNA MER1_type -99 103 9 8 1625 528 174 0 58 chr4 136322113 136322217 -19307903 - B1_Mur3 SINE Alu -46 103 6 8 1625 447 254 145 0 chr4 136322229 136322367 -19307753 - ID_B1 SINE B4 -65 159 2 8 1625 200 354 12 24 chr4 136322639 136322723 -19307397 + L2b LINE L2 3284 3366 -9 8 1625 273 279 171 9 chr4 136323433 136323538 -19306582 + B4 SINE B4 167 288 -4 8 1625 204 179 0 0 chr4 136323551 136323590 -19306530 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1625 228 348 57 33 chr4 136323716 136323838 -19306282 + MLT1F2 LTR MaLR 432 556 -4 8 1625 200 35 35 0 chr4 136324205 136324234 -19305886 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 8 1625 334 263 26 0 chr4 136324387 136324463 -19305657 + ID4_ SINE ID 4 81 -2 8 1625 1151 220 29 0 chr4 136324498 136324707 -19305413 + B3 SINE B2 1 215 -1 8 1625 237 98 0 0 chr4 136324731 136324772 -19305348 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1625 1958 147 8 58 chr4 136324978 136325355 -19304765 - RLTR15 LTR ERVK 0 359 2 8 1625 421 132 40 0 chr4 136325405 136325481 -19304639 + B1_Mus2 SINE Alu 50 128 -19 8 1625 181 353 35 0 chr4 136325732 136325817 -19304303 - MIR SINE MIR -11 251 164 8 1625 335 276 162 8 chr4 136326370 136326487 -19303633 + MLT1I LTR MaLR 221 355 -56 8 1625 315 300 0 0 chr4 136328803 136328893 -19301227 + MIR3 SINE MIR 74 163 -45 8 1625 1115 216 5 9 chr4 136329794 136330014 -19300106 + ID_B1 SINE B4 2 220 -4 8 1625 1016 114 0 7 chr4 136330868 136331009 -19299111 - B1_Mus1 SINE Alu -7 141 2 8 1625 30 27 0 0 chr4 136331780 136331817 -19298303 + AT_rich Low_complexity Low_complexity 1 37 0 8 1625 231 231 46 0 chr4 136333302 136333359 -19296761 - B1_Mur1 SINE Alu 0 149 90 8 1625 505 281 13 58 chr4 136333359 136333514 -19296606 + RSINE1 SINE B4 2 149 -16 8 1625 433 273 0 20 chr4 136333607 136333708 -19296412 - B1F1 SINE Alu -48 101 3 8 1625 311 340 16 120 chr4 136333626 136333733 -19296387 - B4 SINE B4 -125 167 68 8 1625 313 227 78 26 chr4 136333733 136333747 -19296373 - ID4_ SINE ID 0 83 67 8 1625 423 0 0 0 chr4 136333747 136333794 -19296326 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1625 311 340 16 120 chr4 136333794 136333856 -19296264 - B4 SINE B4 -225 67 3 8 1625 308 247 32 21 chr4 136333864 136333959 -19296161 - PB1D10 SINE Alu -21 96 1 8 1625 255 220 52 130 chr4 136333959 136333992 -19296128 - MT2B LTR ERVL -441 160 137 8 1625 304 291 0 12 chr4 136334565 136334645 -19295475 + ID_B1 SINE B4 142 220 -4 8 1625 582 286 32 7 chr4 136334653 136334808 -19295312 + RSINE1 SINE B4 4 162 -3 8 1625 209 209 0 0 chr4 136335207 136335250 -19294870 + L2b LINE L2 3302 3344 -31 8 1625 316 270 31 23 chr4 136335355 136335484 -19294636 - MER113 DNA MER1_type -71 450 321 8 1625 180 300 8 98 chr4 136335652 136335774 -19294346 - L2c LINE L2 -185 3202 3092 8 1625 512 135 152 9 chr4 136335816 136335928 -19294192 - MTD LTR MaLR -14 405 278 8 1625 813 188 11 57 chr4 136335953 136336128 -19293992 - MTD LTR MaLR -243 176 10 8 1625 595 286 75 1 chr4 136337318 136337486 -19292634 - ID_B1 SINE B4 -50 242 58 8 1625 289 220 48 39 chr4 136338788 136338892 -19291228 + MIRc SINE MIR 98 202 -66 8 1625 500 240 41 8 chr4 136338938 136339060 -19291060 - B1F SINE Alu -6 143 18 8 1625 217 317 197 1 chr4 136339167 136339303 -19290817 - MIRm SINE MIR -111 157 2 8 1625 434 277 52 45 chr4 136339357 136339512 -19290608 - MIRb SINE MIR -81 187 28 8 1625 294 311 90 26 chr4 136340115 136340270 -19289850 - MIRb SINE MIR -59 203 39 8 1625 460 242 56 16 chr4 136340569 136340695 -19289425 + RSINE1 SINE B4 35 165 0 8 1625 746 127 0 0 chr4 136340697 136340807 -19289313 + B1_Mur1 SINE Alu 33 142 -7 8 1625 1572 43 21 0 chr4 136341091 136341279 -19288841 - B2_Mm1a SINE B2 -1 192 1 8 1625 438 351 34 78 chr4 136341485 136341754 -19288366 - MER2 DNA MER2_type 0 345 89 8 1625 997 241 24 0 chr4 136341756 136341968 -19288152 - ID_B1 SINE B4 0 224 8 8 1625 283 291 0 0 chr4 136342319 136342405 -19287715 - MIRc SINE MIR -138 130 45 8 1625 343 306 0 8 chr4 136342823 136342945 -19287175 + (CCCA)n Simple_repeat Simple_repeat 4 124 0 8 1625 213 211 0 0 chr4 136343055 136343107 -19287013 + CT-rich Low_complexity Low_complexity 1 52 0 8 1625 183 349 0 43 chr4 136343186 136343255 -19286865 - MIRm SINE MIR 0 276 211 8 1625 201 146 0 0 chr4 136343255 136343303 -19286817 + (CAA)n Simple_repeat Simple_repeat 3 50 0 8 1625 479 190 42 17 chr4 136344034 136344152 -19285968 + B1_Mm SINE Alu 27 147 0 8 1625 273 57 0 0 chr4 136344153 136344188 -19285932 + (CCA)n Simple_repeat Simple_repeat 1 35 0 8 1625 237 132 0 0 chr4 136344188 136344226 -19285894 + (CAA)n Simple_repeat Simple_repeat 3 40 0 8 1625 240 200 0 0 chr4 136344401 136344451 -19285669 + (TCG)n Simple_repeat Simple_repeat 2 51 0 8 1625 289 324 64 17 chr4 136345691 136345864 -19284256 + L2c LINE L2 2981 3161 -226 8 1625 329 254 73 139 chr4 136347500 136347665 -19282455 + MLT1D LTR MaLR 2 155 -350 8 1625 317 341 165 0 chr4 136347724 136347906 -19282214 + MLT1D LTR MaLR 284 495 -10 8 1625 567 0 0 0 chr4 136347944 136348007 -19282113 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1625 294 211 2 28 chr4 136348157 136348229 -19281891 - MIRc SINE MIR -32 176 104 8 1625 755 268 18 0 chr4 136348525 136348693 -19281427 + ID_B1 SINE B4 46 216 -8 8 1625 326 315 31 16 chr4 136348579 136348708 -19281412 - YREP_Mm Unknown Unknown -1515 297 167 8 1625 216 295 66 0 chr4 136349782 136349843 -19280277 - MIRc SINE MIR -118 150 86 8 1625 330 310 126 7 chr4 136349933 136350076 -19280044 + B4 SINE B4 3 162 -130 8 1625 272 286 46 37 chr4 136350265 136350374 -19279746 + MIRm SINE MIR 42 151 -125 8 1625 681 185 17 0 chr4 136351927 136352100 -19278020 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 8 1625 201 342 76 8 chr4 136352241 136352359 -19277761 - MIRm SINE MIR -122 154 29 8 1625 213 175 0 0 chr4 136352585 136352625 -19277495 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1625 311 246 0 0 chr4 136352632 136352697 -19277423 + ID4 SINE ID 6 70 -13 8 1625 290 286 36 0 chr4 136352697 136352716 -19277404 + ID_B1 SINE B4 6 92 -132 8 1625 573 267 67 0 chr4 136354873 136355008 -19275112 + RSINE1 SINE B4 9 152 -13 8 1625 915 169 3 0 chr4 136355025 136355353 -19274767 + (CA)n Simple_repeat Simple_repeat 1 329 0 8 1625 254 331 21 62 chr4 136355944 136356089 -19274031 + MER113 DNA MER1_type 307 445 -76 8 1625 226 119 0 0 chr4 136356767 136356809 -19273311 + L2b LINE L2 3134 3175 -200 8 1625 220 301 54 75 chr4 136357598 136357745 -19272375 + MIR3 SINE MIR 15 158 -50 8 1625 210 298 94 19 chr4 136357920 136358026 -19272094 + MIR SINE MIR 22 135 -127 8 1625 205 286 19 9 chr4 136358059 136358165 -19271955 + (TG)n Simple_repeat Simple_repeat 1 107 0 8 1625 348 140 0 0 chr4 136358166 136358223 -19271897 - HAL1-3A_ME LINE L1 -828 2030 1974 8 1625 209 155 0 17 chr4 136358251 136358310 -19271810 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1625 546 280 67 0 chr4 136358391 136358584 -19271536 - MER113 DNA MER1_type -263 258 53 8 1625 189 195 0 0 chr4 136358711 136358752 -19271368 + CT-rich Low_complexity Low_complexity 3 43 0 8 1625 215 288 9 9 chr4 136359966 136360055 -19270065 - MIR SINE MIR -145 123 35 8 1625 182 240 20 20 chr4 136360439 136360490 -19269630 + MIRb SINE MIR 184 234 -34 8 1625 331 255 112 41 chr4 136360672 136360770 -19269350 + MIR SINE MIR 44 148 -60 8 1625 398 267 9 9 chr4 136361720 136361826 -19268294 + PB1D10 SINE Alu 1 106 -11 8 1625 242 301 5 5 chr4 136361907 136361995 -19268125 - MIR SINE MIR -76 192 99 8 1625 509 274 113 26 chr4 136363719 136363914 -19266206 + ID_B1 SINE B4 10 221 -3 8 1625 742 272 24 53 chr4 136364822 136365028 -19265092 + ID_B1 SINE B4 12 211 -13 8 1625 502 64 0 37 chr4 136365030 136365111 -19265009 + (CATA)n Simple_repeat Simple_repeat 2 79 0 8 1625 1131 139 2 4 chr4 136365445 136365976 -19264144 + (TGGA)n Simple_repeat Simple_repeat 1 530 0 8 1625 250 239 109 20 chr4 136365978 136366111 -19264009 + MIRc SINE MIR 4 147 -61 8 1625 242 246 33 0 chr4 136366269 136366330 -19263790 + B4A SINE B4 1 63 -229 8 1625 284 256 133 0 chr4 136366403 136366493 -19263627 + B4A SINE B4 187 288 -4 8 1625 398 36 18 0 chr4 136366500 136366556 -19263564 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1625 245 258 30 0 chr4 136366853 136366919 -19263201 - L2b LINE L2 0 3375 3308 8 1625 311 299 52 52 chr4 136368266 136368421 -19261699 - MIR SINE MIR -104 158 4 9 1625 225 0 0 0 chr4 136368431 136368456 -19261664 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1625 305 308 26 5 chr4 136368928 136369042 -19261078 + PB1D10 SINE Alu 3 118 -2 9 1625 586 206 7 52 chr4 136369047 136369201 -19260919 + B1F2 SINE Alu 2 148 -1 9 1625 593 215 8 8 chr4 136369203 136369325 -19260795 + RSINE1 SINE B4 3 124 -41 9 1625 558 0 0 0 chr4 136369325 136369387 -19260733 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1625 238 320 0 0 chr4 136370027 136370102 -19260018 - PB1D10 SINE Alu -24 93 19 9 1625 578 218 107 13 chr4 136370736 136370885 -19259235 + RSINE1 SINE B4 3 165 0 9 1625 198 286 0 0 chr4 136370886 136370984 -19259136 + (CA)n Simple_repeat Simple_repeat 2 99 0 9 1625 239 302 251 21 chr4 136372960 136373300 -19256820 - L2a LINE L2 0 3426 2974 9 1625 814 168 143 59 chr4 136374367 136374570 -19255550 + URR1A DNA MER1_type 7 226 0 9 1625 334 242 292 0 chr4 136374734 136374854 -19255266 - ID_B1 SINE B4 -11 213 59 9 1625 1139 107 0 11 chr4 136374944 136375123 -19254997 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 9 1625 288 0 0 0 chr4 136375123 136375155 -19254965 + (TTCTC)n Simple_repeat Simple_repeat 5 36 0 9 1625 1151 75 0 18 chr4 136375155 136375440 -19254680 + (TTTC)n Simple_repeat Simple_repeat 1 280 0 9 1625 190 321 0 0 chr4 136375532 136375585 -19254535 - MIRc SINE MIR -111 157 105 9 1625 225 333 105 8 chr4 136376227 136376360 -19253760 + L2b LINE L2 2930 3075 -300 9 1625 450 0 0 0 chr4 136376425 136376475 -19253645 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1625 534 309 0 0 chr4 136376594 136376730 -19253390 + ID_B1 SINE B4 72 207 -17 9 1625 1040 252 60 35 chr4 136376730 136377014 -19253106 + B4A SINE B4 1 291 -1 9 1625 210 37 0 0 chr4 136377061 136377088 -19253032 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1625 713 235 120 27 chr4 136377237 136377495 -19252625 - B4A SINE B4 -10 282 1 9 1625 229 193 17 34 chr4 136377766 136377825 -19252295 + GA-rich Low_complexity Low_complexity 3 60 0 9 1625 226 280 13 13 chr4 136377931 136378007 -19252113 + (TGGA)n Simple_repeat Simple_repeat 3 78 0 9 1625 644 186 6 17 chr4 136378594 136378774 -19251346 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 9 1625 467 316 17 6 chr4 136378794 136378969 -19251151 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 9 1625 294 222 0 0 chr4 136379321 136379375 -19250745 + ID2 SINE ID 13 66 -17 9 1625 230 313 96 0 chr4 136379375 136379404 -19250716 + ID_B1 SINE B4 13 103 -121 9 1625 249 108 0 0 chr4 136379404 136379441 -19250679 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1625 877 167 196 22 chr4 136379540 136379724 -19250396 + B3 SINE B2 1 216 0 9 1625 1162 88 0 0 chr4 136379866 136380013 -19250107 - B1_Mus1 SINE Alu 0 148 2 9 1625 557 323 6 6 chr4 136380082 136380241 -19249879 - RSINE1 SINE B4 -4 161 3 9 1625 274 300 61 24 chr4 136380244 136380326 -19249794 - B1F SINE Alu -64 85 1 9 1625 828 247 22 0 chr4 136380597 136380775 -19249345 + ID_B1 SINE B4 6 187 -37 9 1625 522 0 0 0 chr4 136381414 136381472 -19248648 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1625 254 236 0 0 chr4 136381609 136381664 -19248456 + B4A SINE B4 1 55 -237 9 1625 292 288 33 33 chr4 136381714 136381836 -19248284 + Charlie8 DNA MER1_type 139 260 -2168 9 1625 445 308 0 0 chr4 136383018 136383135 -19246985 + PB1D7 SINE Alu 3 119 -1 9 1625 461 214 93 73 chr4 136383143 136383294 -19246826 + RSINE1 SINE B4 12 165 0 9 1625 1232 55 0 0 chr4 136383375 136383521 -19246599 - B1_Mus1 SINE Alu -1 147 2 9 1625 286 261 24 49 chr4 136383539 136383634 -19246486 + ID2 SINE ID 6 98 -54 9 1625 250 217 125 42 chr4 136384138 136384234 -19245886 - MER102a DNA MER1_type -142 188 85 9 1625 205 273 0 32 chr4 136384298 136384387 -19245733 + MIRm SINE MIR 90 176 -92 9 1625 191 276 30 68 chr4 136385310 136385420 -19244700 - MIRc SINE MIR -72 196 85 9 1625 977 231 9 24 chr4 136386530 136386743 -19243377 + ID_B1 SINE B4 1 210 -14 9 1625 198 294 146 10 chr4 136387188 136387291 -19242829 - MIRb SINE MIR -132 136 20 9 1625 188 216 20 0 chr4 136387368 136387419 -19242701 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 9 1625 209 254 18 0 chr4 136387437 136387492 -19242628 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 9 1625 31 26 0 0 chr4 136391500 136391538 -19238582 + GC_rich Low_complexity Low_complexity 1 38 0 9 1625 49 60 0 0 chr4 136391765 136391849 -19238271 + GC_rich Low_complexity Low_complexity 1 84 0 9 1625 270 335 127 27 chr4 136393657 136393878 -19236242 - MIRb SINE MIR 0 268 26 9 1625 189 0 0 0 chr4 136393989 136394010 -19236110 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1625 290 303 28 60 chr4 136394504 136394757 -19235363 - MIRc SINE MIR 0 268 14 9 1625 209 360 20 0 chr4 136394754 136394848 -19235272 - L2c LINE L2 -2 3424 3322 9 1625 211 361 10 20 chr4 136395138 136395237 -19234883 + MIRm SINE MIR 33 130 -146 9 1625 361 278 23 38 chr4 136395277 136395408 -19234712 - MER33 DNA MER1_type 0 324 196 9 1625 799 178 222 12 chr4 136395487 136395658 -19234462 - B3 SINE B2 -6 210 4 9 1625 294 214 31 143 chr4 136395817 136395915 -19234205 - PB1D10 SINE Alu -9 108 22 9 1625 832 272 25 0 chr4 136396062 136396264 -19233856 + ID_B1 SINE B4 1 207 -17 9 1625 474 183 4 32 chr4 136396433 136396548 -19233572 - B1_Mur1 SINE Alu -1 148 35 9 1625 444 171 0 0 chr4 136396672 136396754 -19233366 + (TG)n Simple_repeat Simple_repeat 1 82 0 9 1625 180 220 18 91 chr4 136397732 136397787 -19232333 + MIRm SINE MIR 89 139 -137 9 1625 281 315 43 10 chr4 136397798 136397912 -19232208 - PB1D10 SINE Alu -2 118 1 9 1625 243 261 0 0 chr4 136398043 136398089 -19232031 + ID_B1 SINE B4 81 126 -98 9 1625 252 311 126 0 chr4 136398504 136398617 -19231503 - MIRc SINE MIR -62 206 83 9 1625 197 339 100 42 chr4 136398671 136398791 -19231329 + MIRm SINE MIR 13 139 -137 9 1625 279 161 0 0 chr4 136399326 136399382 -19230738 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 9 1625 710 261 7 0 chr4 136399414 136399728 -19230392 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 9 1625 288 244 76 13 chr4 136400440 136400519 -19229601 - MIR3 SINE MIR -54 154 71 9 1625 448 356 14 0 chr4 136401283 136401429 -19228691 + MIRb SINE MIR 3 150 -118 9 1625 592 257 68 0 chr4 136401429 136401577 -19228543 + RSINE1 SINE B4 8 165 0 9 1625 205 244 0 23 chr4 136401577 136401665 -19228455 + (CA)n Simple_repeat Simple_repeat 1 86 0 9 1625 243 360 0 0 chr4 136401853 136401928 -19228192 + ID4 SINE ID 1 75 -8 9 1625 369 0 0 0 chr4 136401933 136401974 -19228146 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 9 1625 222 128 0 0 chr4 136401992 136402031 -19228089 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 9 1625 576 298 90 39 chr4 136402037 136402334 -19227786 - MER2 DNA MER2_type -29 316 1 9 1625 786 230 0 13 chr4 136402605 136402755 -19227365 + RSINE1 SINE B4 4 151 -14 9 1625 357 93 0 0 chr4 136402755 136402809 -19227311 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1625 389 161 104 31 chr4 136402839 136402935 -19227185 + PB1D9 SINE Alu 18 120 0 9 1625 507 312 6 6 chr4 136403235 136403393 -19226727 + MER33 DNA MER1_type 7 164 -160 9 1625 435 240 149 0 chr4 136403437 136403558 -19226562 - RSINE1 SINE B4 -23 142 4 9 1625 484 185 58 58 chr4 136403585 136403723 -19226397 + MER33 DNA MER1_type 171 308 -16 9 1625 351 326 60 45 chr4 136403848 136404047 -19226073 + MER3 DNA MER1_type 5 206 -3 9 1625 386 263 10 10 chr4 136404686 136404786 -19225334 + MIR SINE MIR 50 149 -59 9 1625 270 296 111 22 chr4 136404944 136404976 -19225144 + ID_B1 SINE B4 49 195 -29 9 1625 416 223 136 0 chr4 136404976 136405079 -19225041 + B1F1 SINE Alu 1 117 -32 9 1625 564 268 28 7 chr4 136405102 136405245 -19224875 + B1_Mur1 SINE Alu 1 146 -3 9 1625 274 256 10 140 chr4 136405256 136405356 -19224764 - Tigger5 DNA MER2_type -2319 87 1 9 1625 892 223 49 10 chr4 136405387 136405591 -19224529 - B3 SINE B2 -4 212 1 9 1625 941 113 0 21 chr4 136405654 136405798 -19224322 - B1_Mus2 SINE Alu 0 147 7 9 1625 294 211 179 0 chr4 136405911 136406006 -19224114 + MLT1F1 LTR MaLR 1 112 -457 9 1625 455 324 125 21 chr4 136406117 136406309 -19223811 + MLT1F1 LTR MaLR 328 539 -30 9 1625 572 200 16 16 chr4 136406355 136406477 -19223643 - ID_B1 SINE B4 0 224 103 9 1625 741 103 0 0 chr4 136406565 136406672 -19223448 - B2_Mm2 SINE B2 -88 107 1 9 1625 917 322 28 133 chr4 136406985 136407075 -19223045 - Zaphod DNA Tip100 0 4031 3940 9 1625 338 256 80 32 chr4 136407075 136407200 -19222920 + B1F2 SINE Alu 3 133 -16 9 1625 917 322 28 133 chr4 136407200 136407211 -19222909 - Zaphod DNA Tip100 -92 3939 3939 9 1625 528 333 57 39 chr4 136407211 136407492 -19222628 + B4A SINE B4 4 289 -3 9 1625 917 322 28 133 chr4 136407492 136408058 -19222062 - Zaphod DNA Tip100 -92 3939 3433 9 1625 487 236 0 24 chr4 136408154 136408275 -19221845 - B1F1 SINE Alu -2 115 1 9 1625 247 371 10 0 chr4 136408348 136408445 -19221675 - Zaphod DNA Tip100 -3378 653 556 9 1625 326 315 9 0 chr4 136408472 136408580 -19221540 - ID_B1 SINE B4 -32 192 84 9 1625 375 221 42 0 chr4 136408486 136408581 -19221539 - PB1D7 SINE Alu -20 100 2 9 1625 373 307 59 79 chr4 136408611 136408763 -19221357 - ID_B1 SINE B4 -52 172 24 9 1625 252 333 208 46 chr4 136408771 136409098 -19221022 - Zaphod DNA Tip100 -3507 524 145 9 1625 243 61 0 0 chr4 136409201 136409234 -19220886 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1625 269 339 46 86 chr4 136409355 136409411 -19220709 - B3A SINE B2 0 198 10 9 1625 653 261 0 21 chr4 136409411 136409552 -19220568 - RSINE1 SINE B4 -17 148 11 1 1625 582 252 78 112 chr4 136409560 136409792 -19220328 - ID_B1 SINE B4 0 224 1 1 1625 381 228 21 11 chr4 136410137 136410230 -19219890 + RSINE1 SINE B4 2 95 -70 1 1625 536 28 42 0 chr4 136410240 136410312 -19219808 + (ATGGTG)n Simple_repeat Simple_repeat 4 78 0 1 1625 659 236 14 0 chr4 136410663 136410718 -19219402 + ID SINE ID 26 82 -142 1 1625 477 222 46 9 chr4 136410718 136410827 -19219293 + PB1D10 SINE Alu 1 113 -4 1 1625 368 253 90 6 chr4 136410830 136410997 -19219123 - Charlie1b DNA MER1_type -117 406 226 1 1625 2202 143 61 8 chr4 136411926 136412320 -19217800 - MTC LTR MaLR -1 420 6 1 1625 328 303 11 0 chr4 136412408 136412497 -19217623 - MIR SINE MIR -108 154 65 1 1625 180 269 62 31 chr4 136412580 136412676 -19217444 - L2c LINE L2 -163 3224 3126 1 1625 504 0 0 0 chr4 136412687 136412743 -19217377 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1625 181 274 81 0 chr4 136413369 136413431 -19216689 + L2b LINE L2 3309 3375 0 1 1625 187 308 117 51 chr4 136413506 136413643 -19216477 - L2c LINE L2 -170 3217 3072 1 1625 312 314 87 22 chr4 136413810 136413949 -19216171 + MIRb SINE MIR 42 185 -91 1 1625 199 376 65 26 chr4 136414189 136414342 -19215778 + L2a LINE L2 3267 3425 -1 1 1625 364 336 30 23 chr4 136414495 136414626 -19215494 - RSINE1 SINE B4 -2 163 32 1 1625 235 303 0 0 chr4 136415909 136415975 -19214145 + G-rich Low_complexity Low_complexity 3 68 0 1 1625 906 241 0 15 chr4 136415990 136416188 -19213932 + B3A SINE B2 2 196 -2 1 1625 1395 104 10 0 chr4 136416191 136416384 -19213736 + B2_Mm2 SINE B2 1 195 0 1 1625 404 341 0 0 chr4 136416738 136416873 -19213247 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 1625 303 205 122 49 chr4 136417564 136417646 -19212474 + MIRb SINE MIR 65 152 -116 1 1625 247 118 40 21 chr4 136418908 136418967 -19211153 - L2b LINE L2 -239 3148 3086 1 1625 528 16 0 0 chr4 136418967 136419028 -19211092 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 1 1625 240 186 136 23 chr4 136419028 136419056 -19211064 - L2b LINE L2 -302 3085 3052 1 1625 817 265 30 30 chr4 136419810 136420047 -19210073 - MIR SINE MIR 0 262 26 1 1625 303 256 26 0 chr4 136420140 136420218 -19209902 - ID4 SINE ID 0 83 4 1 1625 362 225 11 0 chr4 136420409 136420498 -19209622 - B1F SINE Alu -53 96 7 1 1625 313 296 46 9 chr4 136421871 136421980 -19208140 + MIRc SINE MIR 65 177 -91 1 1625 490 255 224 42 chr4 136422821 136423118 -19207002 - ORR1E LTR MaLR 0 359 9 1 1625 228 315 67 11 chr4 136423281 136423371 -19206749 - MIRb SINE MIR -94 174 80 1 1625 258 208 75 0 chr4 136423593 136423680 -19206440 - MIRc SINE MIR -37 171 79 1 1625 22 0 0 0 chr4 136423867 136423889 -19206231 + GC_rich Low_complexity Low_complexity 1 22 0 1 1625 861 138 4 2 chr4 136424674 136425177 -19204943 + (TG)n Simple_repeat Simple_repeat 1 504 0 1 1625 619 220 45 8 chr4 136425380 136425513 -19204607 + ID_B1 SINE B4 80 217 -7 1 1625 266 329 20 141 chr4 136425405 136425603 -19204517 - YREP_Mm Unknown Unknown -1518 294 121 1 1625 1546 207 119 19 chr4 136426485 136426855 -19203265 - MTD LTR MaLR 0 419 13 1 1625 480 339 20 115 chr4 136426914 136427043 -19203077 - B4A SINE B4 -63 229 99 1 1625 996 75 0 0 chr4 136427043 136427177 -19202943 + (TTTC)n Simple_repeat Simple_repeat 4 137 0 1 1625 480 339 20 115 chr4 136427177 136427224 -19202896 - B4A SINE B4 -194 98 76 1 1625 1206 102 0 0 chr4 136427224 136427400 -19202720 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1 1625 480 339 20 115 chr4 136427400 136427475 -19202645 - B4A SINE B4 -217 75 1 1 1625 207 0 0 0 chr4 136427475 136427498 -19202622 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1625 491 31 0 15 chr4 136427498 136427563 -19202557 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1625 212 357 0 0 chr4 136427586 136427698 -19202422 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1625 345 295 122 8 chr4 136427724 136427847 -19202273 - B4A SINE B4 -19 273 137 1 1625 789 274 238 18 chr4 136427904 136428290 -19201830 - Lx8 LINE L1 -5 7468 6998 1 1625 281 322 11 11 chr4 136428312 136428400 -19201720 - B4A SINE B4 -204 88 1 1 1625 1465 64 11 5 chr4 136428408 136428596 -19201524 - B2_Mm2 SINE B2 -5 190 2 1 1625 396 278 35 0 chr4 136428641 136428756 -19201364 - MER2 DNA MER2_type -120 225 107 1 1625 330 94 0 19 chr4 136428997 136429051 -19201069 - B2_Mm2 SINE B2 -96 99 47 1 1625 1027 105 13 0 chr4 136429102 136429254 -19200866 - B2_Mm1t SINE B2 -38 155 2 1 1625 290 273 52 31 chr4 136429518 136429678 -19200442 - MIR3 SINE MIR -94 174 10 1 1625 195 273 0 0 chr4 136429985 136430029 -19200091 + MIRb SINE MIR 36 79 -189 1 1625 587 259 49 69 chr4 136430245 136430448 -19199672 + B4 SINE B4 6 204 -88 1 1625 725 160 8 0 chr4 136430342 136430467 -19199653 + B1_Mus1 SINE Alu 9 134 -14 1 1625 1041 79 0 0 chr4 136430479 136430619 -19199501 - B1_Mus1 SINE Alu 0 148 9 1 1625 700 283 5 16 chr4 136430645 136430835 -19199285 + B4A SINE B4 102 289 -3 1 1625 360 152 0 0 chr4 136430843 136430909 -19199211 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1625 570 337 135 3 chr4 136430941 136431245 -19198875 - MER2 DNA MER2_type -1 344 1 1 1625 2145 156 79 5 chr4 136431353 136431745 -19198375 - MTC LTR MaLR 0 421 1 1 1625 291 325 11 11 chr4 136431773 136431860 -19198260 - PB1D10 SINE Alu -22 95 9 1 1625 946 195 78 29 chr4 136431931 136432137 -19197983 + B3 SINE B2 1 216 0 1 1625 967 271 51 68 chr4 136432150 136432305 -19197815 - MTE2a LTR MaLR -33 346 191 1 1625 186 103 0 0 chr4 136432305 136432334 -19197786 + (CTTG)n Simple_repeat Simple_repeat 1 29 0 1 1625 967 271 51 68 chr4 136432334 136432530 -19197590 - MTE2a LTR MaLR -189 190 1 1 1625 323 307 121 18 chr4 136432765 136432931 -19197189 - MER5A DNA MER1_type -2 187 5 1 1625 301 261 216 0 chr4 136433173 136433261 -19196859 + PB1D7 SINE Alu 1 107 -13 1 1625 410 0 0 20 chr4 136433264 136433315 -19196805 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1625 436 304 65 12 chr4 136433319 136433489 -19196631 + B3A SINE B2 20 198 0 1 1625 1032 223 66 0 chr4 136433498 136433695 -19196425 + B3 SINE B2 2 211 -5 1 1625 22 0 0 0 chr4 136433700 136433722 -19196398 + AT_rich Low_complexity Low_complexity 1 22 0 1 1625 297 0 0 0 chr4 136433723 136433756 -19196364 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1625 399 245 27 36 chr4 136433760 136433777 -19196343 + B3A SINE B2 2 18 -180 1 1625 1248 133 31 44 chr4 136433777 136434005 -19196115 - URR1B DNA MER1_type 0 225 1 1 1625 399 245 27 36 chr4 136434005 136434097 -19196023 + B3A SINE B2 19 108 -90 1 1625 213 39 0 0 chr4 136434532 136434558 -19195562 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1625 335 263 73 22 chr4 136434680 136434816 -19195304 - MIRb SINE MIR -122 146 4 1 1625 189 290 105 21 chr4 136434848 136434943 -19195177 + MIRc SINE MIR 45 147 -121 1 1625 411 200 6 86 chr4 136435013 136435163 -19194957 + PB1 SINE Alu 10 164 -150 1 1625 208 159 0 73 chr4 136435564 136435632 -19194488 + CT-rich Low_complexity Low_complexity 4 66 0 1 1625 396 0 0 0 chr4 136435648 136435692 -19194428 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1625 1066 224 76 20 chr4 136435693 136435944 -19194176 - B4 SINE B4 -25 267 3 1 1625 369 345 14 7 chr4 136437076 136437219 -19192901 - MER117 DNA MER1_type -1 196 53 1 1625 1120 177 113 0 chr4 136437296 136437499 -19192621 - URR1A DNA MER1_type 0 226 1 1 1625 322 161 35 40 chr4 136437533 136437622 -19192498 + MIRc SINE MIR 71 156 -52 1 1625 434 238 6 0 chr4 136438299 136438459 -19191661 + (TCCA)n Simple_repeat Simple_repeat 1 161 0 1 1625 343 320 16 8 chr4 136438471 136438594 -19191526 + (TCCA)n Simple_repeat Simple_repeat 1 124 0 1 1625 321 235 0 0 chr4 136438608 136438693 -19191427 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 1 1625 217 271 0 0 chr4 136438722 136438781 -19191339 + (CATG)n Simple_repeat Simple_repeat 2 60 0 1 1625 974 177 4 0 chr4 136438785 136439050 -19191070 + (TCCA)n Simple_repeat Simple_repeat 1 266 0 1 1625 700 248 49 22 chr4 136439386 136439596 -19190524 + B3A SINE B2 6 214 -2 1 1625 948 237 61 0 chr4 136439597 136439795 -19190325 + B3 SINE B2 1 210 -6 1 1625 738 172 7 29 chr4 136439836 136439974 -19190146 - B1_Mus2 SINE Alu -8 139 5 1 1625 3559 23 2 0 chr4 136440076 136440471 -19189649 - MTA_Mm LTR MaLR 0 396 1 1 1625 278 301 65 8 chr4 136441008 136441132 -19188988 - MIRc SINE MIR -120 148 18 1 1625 273 224 34 45 chr4 136441267 136441356 -19188764 + MIR SINE MIR 34 121 -141 1 1625 201 308 61 15 chr4 136441613 136441744 -19188376 - MIRm SINE MIR -101 175 37 1 1625 278 260 20 40 chr4 136442793 136442893 -19187227 - MIR3 SINE MIR -5 203 106 1 1625 364 245 34 41 chr4 136443253 136443376 -19186744 - PB1D7 SINE Alu -12 137 14 1 1625 210 244 0 0 chr4 136444193 136444238 -19185882 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1625 243 0 0 0 chr4 136444396 136444423 -19185697 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1625 1300 27 0 0 chr4 136444423 136444570 -19185550 - B1_Mus2 SINE Alu 0 147 1 1 1625 345 100 0 0 chr4 136444859 136444909 -19185211 + (ATTG)n Simple_repeat Simple_repeat 3 52 0 1 1625 632 243 30 61 chr4 136445067 136445264 -19184856 - B3A SINE B2 0 198 8 1 1626 222 303 83 0 chr4 136446721 136446830 -19183290 + L2c LINE L2 3054 3171 -216 1 1626 265 353 71 35 chr4 136447267 136447408 -19182712 + MIR SINE MIR 81 226 -36 1 1626 204 344 58 26 chr4 136447794 136447949 -19182171 + MIRm SINE MIR 44 203 -73 1 1626 218 299 26 78 chr4 136447864 136447980 -19182140 - MIRb SINE MIR -48 220 111 1 1626 279 0 0 0 chr4 136449056 136449087 -19181033 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1626 217 300 0 0 chr4 136450720 136450780 -19179340 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1626 1177 88 0 0 chr4 136451618 136451765 -19178355 - B1_Mus1 SINE Alu 0 148 2 1 1626 320 141 62 15 chr4 136452770 136452835 -19177285 + MIRc SINE MIR 77 144 -124 1 1626 267 312 0 0 chr4 136453236 136453313 -19176807 - MIRc SINE MIR -119 149 73 1 1626 387 222 23 23 chr4 136453936 136454111 -19176009 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 1 1626 918 155 32 22 chr4 136455191 136455376 -19174744 - B2_Mm2 SINE B2 0 195 9 1 1626 937 118 73 0 chr4 136455421 136455557 -19174563 - B1_Mus1 SINE Alu -1 147 2 1 1626 218 242 45 0 chr4 136455563 136455629 -19174491 + MIRb SINE MIR 126 194 -74 1 1626 403 250 99 42 chr4 136455725 136455867 -19174253 - RSINE1 SINE B4 0 165 16 1 1626 377 274 28 9 chr4 136455874 136455981 -19174139 - PB1D10 SINE Alu -5 112 4 1 1626 627 256 11 45 chr4 136455981 136456036 -19174084 - ID SINE ID -141 83 35 1 1626 3247 74 7 2 chr4 136456036 136456455 -19173665 + BGLII LTR ERVK 1 421 0 1 1626 627 256 11 45 chr4 136456455 136456487 -19173633 - ID SINE ID -190 34 2 1 1626 316 353 104 8 chr4 136456654 136456788 -19173332 + ID_B1 SINE B4 77 223 -1 1 1626 323 200 0 0 chr4 136456791 136456851 -19173269 + RSINE1 SINE B4 3 62 -103 1 1626 526 93 11 11 chr4 136456901 136456988 -19173132 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 1626 421 277 0 0 chr4 136457175 136457269 -19172851 + RSINE1 SINE B4 43 136 -29 1 1626 246 336 89 20 chr4 136457425 136457571 -19172549 - LTR37B LTR ERV1 -296 172 17 1 1626 950 155 7 7 chr4 136457648 136457797 -19172323 + B1_Mur4 SINE Alu 2 150 0 1 1626 941 249 71 28 chr4 136457878 136458076 -19172044 + B4 SINE B4 2 213 -79 1 1626 213 39 0 0 chr4 136458076 136458102 -19172018 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1626 941 249 71 28 chr4 136458102 136458155 -19171965 + B4 SINE B4 214 264 -28 1 1626 405 163 0 0 chr4 136458156 136458248 -19171872 + CT-rich Low_complexity Low_complexity 1 92 0 1 1626 466 192 13 0 chr4 136458444 136458595 -19171525 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1626 423 152 15 0 chr4 136458598 136458664 -19171456 - ID4_ SINE ID -15 68 2 1 1626 407 203 152 16 chr4 136458676 136458801 -19171319 - B1F SINE Alu -5 144 3 1 1626 225 238 31 31 chr4 136458919 136458984 -19171136 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 1 1626 252 0 0 0 chr4 136459418 136459446 -19170674 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1626 771 184 13 33 chr4 136460362 136460514 -19169606 + B1_Mur2 SINE Alu 1 149 0 1 1626 208 254 0 0 chr4 136460514 136460569 -19169551 + A-rich Low_complexity Low_complexity 1 55 0 1 1626 749 290 50 5 chr4 136462227 136462428 -19167692 + ID_B1 SINE B4 1 210 -14 1 1626 194 0 39 0 chr4 136462429 136462455 -19167665 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1626 249 254 0 0 chr4 136462505 136462560 -19167560 - L3 LINE CR1 -97 4392 4338 1 1626 323 313 58 42 chr4 136463461 136463581 -19166539 + MIR SINE MIR 81 202 -60 1 1626 649 216 50 43 chr4 136463588 136463728 -19166392 + B1F SINE Alu 2 142 -7 1 1626 644 270 37 31 chr4 136463767 136463958 -19166162 + B4 SINE B4 56 247 -45 1 1626 365 242 50 10 chr4 136464023 136464123 -19165997 + PB1D7 SINE Alu 1 104 -16 1 1626 246 179 0 0 chr4 136464123 136464179 -19165941 + (CAGAGA)n Simple_repeat Simple_repeat 5 60 0 1 1626 203 0 37 0 chr4 136464467 136464494 -19165626 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 1 1626 1014 105 21 0 chr4 136464494 136464637 -19165483 - B1_Mus2 SINE Alu -1 146 1 1 1626 405 0 0 0 chr4 136464654 136464699 -19165421 + (TTAA)n Simple_repeat Simple_repeat 3 47 0 1 1626 628 156 9 18 chr4 136464699 136464803 -19165317 - B1_Mur4 SINE Alu -12 138 34 1 1626 391 223 44 14 chr4 136464912 136465017 -19165103 + B3A SINE B2 84 189 -27 1 1626 869 186 0 0 chr4 136465018 136465158 -19164962 - B1_Mus2 SINE Alu -5 142 3 1 1626 266 207 41 7 chr4 136465854 136466000 -19164120 + (TCTG)n Simple_repeat Simple_repeat 2 152 0 1 1626 322 264 30 15 chr4 136466026 136466157 -19163963 + (TCTG)n Simple_repeat Simple_repeat 4 136 0 1 1626 564 111 0 0 chr4 136466158 136466257 -19163863 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1626 210 219 47 0 chr4 136466258 136466322 -19163798 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 1 1626 481 259 175 57 chr4 136466354 136466600 -19163520 - B4 SINE B4 -16 276 2 1 1626 400 202 2 0 chr4 136466724 136466811 -19163309 + MIR SINE MIR 69 156 -112 1 1626 326 80 20 0 chr4 136468224 136468274 -19161846 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1626 240 35 0 0 chr4 136469129 136469158 -19160962 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1626 441 0 0 0 chr4 136469288 136469337 -19160783 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 1626 255 196 0 21 chr4 136469584 136469657 -19160463 - MIRc SINE MIR -136 132 64 1 1626 622 295 29 34 chr4 136469790 136469997 -19160123 - B4A SINE B4 -6 286 81 1 1626 757 179 29 98 chr4 136470007 136470211 -19159909 - B3A SINE B2 -8 190 1 1 1626 936 0 0 0 chr4 136471099 136471203 -19158917 + (TTC)n Simple_repeat Simple_repeat 2 105 0 1 1626 233 276 71 0 chr4 136471237 136471335 -19158785 - B1_Mur2 SINE Alu -2 147 43 1 1626 189 351 96 37 chr4 136471345 136471481 -19158639 - L2a LINE L2 -1 3425 3282 1 1626 358 286 28 38 chr4 136471453 136471592 -19158528 + MIRb SINE MIR 12 165 -103 1 1626 214 333 16 0 chr4 136471892 136471955 -19158165 - MIRm SINE MIR 0 276 213 1 1626 340 242 134 104 chr4 136472005 136472139 -19157981 - RSINE1 SINE B4 -19 146 9 1 1626 266 319 0 0 chr4 136474006 136474078 -19156042 - B4 SINE B4 -207 85 14 1 1626 391 141 0 15 chr4 136474016 136474081 -19156039 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 1 1626 602 215 53 15 chr4 136474104 136474236 -19155884 - B1F SINE Alu -4 145 9 1 1626 207 133 0 0 chr4 136474243 136474288 -19155832 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 1 1626 1225 41 0 20 chr4 136474288 136474438 -19155682 - B1_Mm SINE Alu 0 147 1 1 1626 1523 43 27 0 chr4 136474438 136474623 -19155497 - B2_Mm1a SINE B2 -2 191 1 1 1626 295 331 61 12 chr4 136475275 136475440 -19154680 + MIRb SINE MIR 26 198 -70 1 1626 248 143 0 39 chr4 136476168 136476219 -19153901 + B3A SINE B2 2 50 -148 1 1626 542 278 59 55 chr4 136476425 136476661 -19153459 + ORR1E LTR MaLR 1 237 -122 1 1626 1255 59 12 0 chr4 136476681 136476850 -19153270 + B2_Mm2 SINE B2 2 172 -23 1 1626 950 69 0 8 chr4 136476854 136476986 -19153134 + (GAA)n Simple_repeat Simple_repeat 1 131 0 1 1626 856 191 45 85 chr4 136477262 136477508 -19152612 + ORR1D1 LTR MaLR 1 236 -138 1 1626 252 360 54 9 chr4 136479250 136479362 -19150758 + L2b LINE L2 3238 3354 -21 1 1626 1425 85 21 5 chr4 136479778 136479967 -19150153 - B2_Mm2 SINE B2 -3 192 1 1 1626 540 250 0 0 chr4 136480004 136480116 -19150004 - PB1D9 SINE Alu -6 114 3 1 1626 231 391 49 74 chr4 136480128 136480291 -19149829 - B3 SINE B2 0 216 58 1 1626 546 291 81 0 chr4 136480291 136480439 -19149681 - RSINE1 SINE B4 -4 161 2 1 1626 300 233 55 0 chr4 136480830 136480903 -19149217 - RSINE1 SINE B4 -87 78 2 1 1626 654 237 112 6 chr4 136481021 136481191 -19148929 - B3 SINE B2 -6 210 23 1 1626 303 312 104 0 chr4 136481216 136481312 -19148808 - PB1D10 SINE Alu -11 106 1 1 1626 680 256 81 27 chr4 136481342 136481527 -19148593 - B3A SINE B2 -3 195 1 1 1626 547 263 45 0 chr4 136482528 136482661 -19147459 + ID_B1 SINE B4 82 220 -4 1 1626 287 329 76 18 chr4 136482712 136482935 -19147185 - L1M4 LINE L1 -539 5585 5350 1 1626 271 244 36 71 chr4 136483019 136483103 -19147017 - ID4_ SINE ID -1 82 2 1 1626 336 48 0 0 chr4 136483131 136483173 -19146947 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1626 604 307 7 0 chr4 136483175 136483325 -19146795 - RSINE1 SINE B4 -11 154 4 1 1626 438 187 0 39 chr4 136483382 136483460 -19146660 + ID4 SINE ID 2 76 -7 1 1626 495 0 0 0 chr4 136483464 136483519 -19146601 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 1626 391 274 96 0 chr4 136483521 136483653 -19146467 - B1F SINE Alu -2 147 1 1 1626 606 109 0 0 chr4 136483801 136483893 -19146227 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1626 226 294 34 45 chr4 136484175 136484264 -19145856 - L1M4 LINE L1 -1443 4703 4616 1 1626 255 61 0 0 chr4 136485286 136485319 -19144801 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1626 192 323 16 0 chr4 136485984 136486046 -19144074 + MIRm SINE MIR 67 129 -147 1 1626 284 261 9 26 chr4 136490800 136490914 -19139206 + (GGCTG)n Simple_repeat Simple_repeat 4 115 0 1 1626 522 228 20 0 chr4 136492794 136492895 -19137225 + PB1D7 SINE Alu 1 103 -17 1 1626 523 257 22 0 chr4 136493944 136494023 -19136097 + ID SINE ID 2 83 -141 1 1626 355 263 40 0 chr4 136494023 136494122 -19135998 + PB1D7 SINE Alu 2 104 -16 1 1626 215 356 130 5 chr4 136497104 136497296 -19132824 + L2b LINE L2 2946 3161 -214 1 1626 280 273 22 46 chr4 136498246 136498354 -19131766 + MIRc SINE MIR 68 182 -86 1 1626 238 296 14 0 chr4 136498436 136498507 -19131613 - ID4 SINE ID -10 73 2 1 1626 231 280 57 18 chr4 136499341 136499477 -19130643 + MIR SINE MIR 15 147 -121 1 1626 700 327 99 34 chr4 136499675 136499969 -19130151 - MamRep4096 DNA hAT? -112 314 2 1 1626 202 333 15 15 chr4 136500277 136500344 -19129776 + MIRb SINE MIR 122 188 -80 1 1626 248 241 13 0 chr4 136500808 136500887 -19129233 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1626 451 309 112 0 chr4 136501138 136501290 -19128830 + MIR SINE MIR 31 199 -63 3 1626 261 0 0 0 chr4 136501521 136501550 -19128570 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 4 1626 387 261 403 7 chr4 136502762 136502843 -19127277 - ID_B1 SINE B4 -2 222 40 5 1626 214 305 0 0 chr4 136502843 136502902 -19127218 - ID4_ SINE ID -2 81 23 6 1626 863 239 82 10 chr4 136503046 136503415 -19126705 + L1MB3 LINE L1 5192 5595 -585 7 1626 313 296 17 10 chr4 136503604 136503735 -19126385 + L1MB3 LINE L1 5725 5854 -324 7 1626 342 0 0 0 chr4 136503764 136503802 -19126318 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1626 708 260 49 84 chr4 136503820 136504106 -19126014 - B4A SINE B4 -16 276 1 9 1626 348 307 48 107 chr4 136504213 136504465 -19125655 + L1MB3 LINE L1 5947 6183 0 7 1626 302 190 0 0 chr4 136504475 136504533 -19125587 + ID4_ SINE ID 12 69 -14 1 1626 301 254 0 0 chr4 136504533 136504545 -19125575 + tRNA-Ala-GCY_ tRNA tRNA 6 75 0 1 1626 216 0 0 0 chr4 136504635 136504659 -19125461 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1626 1009 116 0 7 chr4 136504659 136504935 -19125185 + (GA)n Simple_repeat Simple_repeat 1 273 0 1 1626 194 273 30 0 chr4 136505364 136505430 -19124690 + MIRb SINE MIR 180 247 -21 1 1626 183 188 0 0 chr4 136506752 136506784 -19123336 + MIRc SINE MIR 117 148 -120 1 1626 333 0 0 0 chr4 136507561 136507598 -19122522 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 1 1626 193 342 59 46 chr4 136507783 136507936 -19122184 + L2b LINE L2 2960 3114 -261 1 1626 230 323 0 0 chr4 136508050 136508115 -19122005 + MIR SINE MIR 89 153 -55 1 1626 218 351 57 45 chr4 136508306 136508499 -19121621 - MIRb SINE MIR -25 243 52 1 1626 254 325 119 0 chr4 136508672 136508798 -19121322 + MIRb SINE MIR 101 241 -27 2 1626 279 79 0 0 chr4 136511514 136511552 -19118568 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1626 30 45 0 0 chr4 136512523 136512567 -19117553 + GC_rich Low_complexity Low_complexity 1 44 0 2 1626 47 104 0 0 chr4 136512640 136512813 -19117307 + GC_rich Low_complexity Low_complexity 1 173 0 2 1626 21 82 0 0 chr4 136512822 136512871 -19117249 + GC_rich Low_complexity Low_complexity 1 49 0 2 1626 182 283 42 117 chr4 136513823 136513943 -19116177 + L3 LINE CR1 4302 4412 -77 2 1626 690 24 0 0 chr4 136515448 136515532 -19114588 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1626 592 229 0 8 chr4 136515611 136515730 -19114390 + ID_B1 SINE B4 98 215 -9 2 1626 228 380 26 39 chr4 136515615 136515771 -19114349 - YREP_Mm Unknown Unknown -1516 296 143 2 1626 216 158 0 0 chr4 136516024 136516062 -19114058 + T-rich Low_complexity Low_complexity 3 40 0 2 1626 189 307 57 73 chr4 136517431 136517554 -19112566 + MIRb SINE MIR 11 131 -137 3 1626 540 0 0 0 chr4 136517568 136517628 -19112492 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1626 383 301 86 56 chr4 136517675 136517837 -19112283 - MIRb SINE MIR -62 206 40 3 1626 408 338 89 0 chr4 136518204 136518361 -19111759 + MIRb SINE MIR 22 192 -76 3 1626 1174 126 132 29 chr4 136520320 136520525 -19109595 - URR1A DNA MER1_type 0 226 1 3 1626 405 0 0 0 chr4 136521984 136522029 -19108091 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1626 396 276 31 0 chr4 136522117 136522215 -19107905 + PB1D10 SINE Alu 5 105 -12 3 1626 193 312 73 0 chr4 136523026 136523122 -19106998 - MIR SINE MIR -86 122 20 3 1626 315 179 0 0 chr4 136523710 136523777 -19106343 + GA-rich Low_complexity Low_complexity 1 67 0 3 1626 420 20 0 0 chr4 136523860 136523909 -19106211 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1626 286 298 114 48 chr4 136525183 136525373 -19104747 - L2b LINE L2 -4 3422 3234 4 1626 216 266 190 0 chr4 136526246 136526325 -19103795 + MIRc SINE MIR 52 145 -123 4 1626 228 185 37 0 chr4 136526408 136526462 -19103658 + (TGG)n Simple_repeat Simple_repeat 1 56 0 4 1626 279 281 44 22 chr4 136526931 136527022 -19103098 - MER106B DNA MER1_type -74 985 893 4 1626 212 167 21 0 chr4 136527542 136527590 -19102530 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 4 1626 273 334 129 55 chr4 136527727 136528091 -19102029 + L2a LINE L2 2421 2811 -608 4 1626 308 179 15 15 chr4 136528174 136528242 -19101878 + MLT1A1 LTR MaLR 341 408 0 4 1626 264 380 42 7 chr4 136528366 136528509 -19101611 + L2a LINE L2 3279 3426 0 4 1626 352 325 213 11 chr4 136530481 136530655 -19099465 - MER3 DNA MER1_type 0 209 1 4 1626 537 263 195 18 chr4 136532418 136532633 -19097487 - B4A SINE B4 -10 282 30 4 1626 180 234 64 0 chr4 136533430 136533477 -19096643 + L3 LINE CR1 2155 2204 -2285 4 1626 222 136 136 0 chr4 136534176 136534220 -19095900 - PB1D9 SINE Alu -8 112 63 5 1626 180 0 0 0 chr4 136534243 136534263 -19095857 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1626 392 282 54 39 chr4 136534277 136534406 -19095714 - B1_Mur2 SINE Alu -18 131 1 5 1626 374 340 80 0 chr4 136541309 136541471 -19088649 + Kanga1b DNA Tc2 77 251 -528 5 1626 1191 147 106 16 chr4 136541869 136542125 -19087995 + RMER1B Other Other 776 1054 -12 5 1626 186 43 0 0 chr4 136542127 136542150 -19087970 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1626 435 296 42 7 chr4 136542745 136542888 -19087232 - MIRb SINE MIR -75 193 46 5 1626 188 191 48 0 chr4 136543452 136543494 -19086626 - MIRm SINE MIR -156 120 77 5 1626 263 215 92 0 chr4 136544061 136544126 -19085994 - ID4_ SINE ID -11 72 2 5 1626 1659 11 0 35 chr4 136544134 136544333 -19085787 - B2_Mm1a SINE B2 -1 192 1 5 1626 243 0 0 0 chr4 136545226 136545253 -19084867 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1626 282 355 66 62 chr4 136546132 136546199 -19083921 - MIR SINE MIR -3 259 195 6 1626 2070 152 35 37 chr4 136546199 136546576 -19083544 + ORR1C1 LTR MaLR 1 376 -2 6 1626 282 355 66 62 chr4 136546576 136546766 -19083354 - MIR SINE MIR -68 194 1 6 1626 249 315 110 72 chr4 136548468 136548704 -19081416 + MLT1D LTR MaLR 212 456 -49 6 1626 180 0 0 0 chr4 136549092 136549112 -19081008 + (TTTTC)n Simple_repeat Simple_repeat 3 22 0 6 1626 1015 136 0 0 chr4 136549116 136549256 -19080864 - B1_Mus1 SINE Alu -7 141 2 6 1626 196 239 22 0 chr4 136549257 136549303 -19080817 - L2a LINE L2 -12 3414 3368 6 1626 318 26 0 0 chr4 136554845 136554884 -19075236 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1626 407 286 19 0 chr4 136554896 136555001 -19075119 - PB1D10 SINE Alu -1 116 10 6 1626 475 283 26 0 chr4 136555080 136555193 -19074927 + RSINE1 SINE B4 4 119 -46 6 1626 261 378 81 0 chr4 136556151 136556323 -19073797 - MIRb SINE MIR -8 260 75 7 1626 183 269 9 139 chr4 136558850 136558958 -19071162 - L3b LINE CR1 -111 371 278 7 1626 512 195 0 0 chr4 136558970 136559052 -19071068 - B1F SINE Alu -35 114 33 7 1626 2453 57 16 9 chr4 136559168 136559485 -19070635 + ORR1A2 LTR MaLR 1 319 -8 7 1626 489 230 79 0 chr4 136559625 136559751 -19070369 - B1F1 SINE Alu 0 149 14 7 1626 286 301 85 35 chr4 136559751 136559766 -19070354 - ID_B1 SINE B4 -2 222 75 7 1626 236 53 26 0 chr4 136559766 136559804 -19070316 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 7 1626 276 100 0 0 chr4 136559843 136559883 -19070237 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1626 977 158 205 0 chr4 136560174 136560345 -19069775 - B3 SINE B2 -9 207 2 7 1626 685 33 22 0 chr4 136560355 136560447 -19069673 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 7 1626 521 67 53 0 chr4 136560447 136560522 -19069598 - B1_Mur4 SINE Alu 0 150 72 8 1626 259 318 51 37 chr4 136560883 136561063 -19069057 + MIRb SINE MIR 16 197 -71 8 1626 438 306 101 10 chr4 136562238 136562446 -19067674 + L1M5 LINE L1 5537 5763 -361 8 1626 272 335 78 47 chr4 136563981 136564172 -19065948 + L2b LINE L2 3176 3372 -3 8 1626 265 294 79 8 chr4 136564301 136564428 -19065692 - MamRep434 DNA TcMar -29 397 262 8 1626 801 254 0 32 chr4 136565203 136565390 -19064730 + B3A SINE B2 18 198 0 8 1626 607 337 90 51 chr4 136565809 136566165 -19063955 + MLT1F2 LTR MaLR 186 555 -5 8 1626 351 207 6 0 chr4 136566961 136567028 -19063092 + B3A SINE B2 21 91 -125 8 1626 219 154 277 0 chr4 136567237 136567302 -19062818 + ID4_ SINE ID 1 83 0 8 1626 250 223 197 54 chr4 136568912 136569059 -19061061 + MER5A DNA MER1_type 1 168 -21 8 1626 294 396 55 1 chr4 136569265 136569446 -19060674 - MIRb SINE MIR -8 260 60 9 1626 279 0 0 0 chr4 136569652 136569683 -19060437 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1626 1834 306 78 72 chr4 136569698 136570579 -19059541 + RCHARR1 DNA MER1_type 84 970 -4 9 1626 276 240 13 0 chr4 136570833 136570908 -19059212 - ID2 SINE ID -6 77 2 9 1626 752 220 159 16 chr4 136571230 136571419 -19058701 - B3 SINE B2 0 216 1 9 1626 270 321 101 41 chr4 136572330 136572499 -19057621 + MIRb SINE MIR 45 223 -45 9 1626 380 267 65 50 chr4 136572701 136572718 -19057402 + ID_B1 SINE B4 68 123 -169 9 1626 627 152 35 18 chr4 136572718 136572850 -19057270 + B1_Mur1 SINE Alu 2 147 -2 9 1626 380 267 65 50 chr4 136572850 136572875 -19057245 + ID_B1 SINE B4 124 262 -30 9 1626 539 162 93 28 chr4 136572875 136572983 -19057137 + PB1D10 SINE Alu 3 117 0 9 1626 846 208 0 0 chr4 136573670 136573814 -19056306 + B1F2 SINE Alu 5 148 -1 9 1626 339 25 0 0 chr4 136574789 136574829 -19055291 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 1 1626 1167 68 0 13 chr4 136575161 136575310 -19054810 + B1_Mm SINE Alu 1 147 0 1 1626 650 301 129 41 chr4 136575460 136575648 -19054472 + L2 LINE L2 2350 2546 -873 1 1626 1160 206 9 23 chr4 136575648 136575867 -19054253 + B3 SINE B2 1 216 0 1 1626 650 301 129 41 chr4 136575867 136576188 -19053932 + L2 LINE L2 2547 2904 -515 1 1627 198 0 0 0 chr4 136577027 136577049 -19053071 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1627 932 88 0 7 chr4 136577049 136577185 -19052935 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 1 1627 295 234 15 15 chr4 136577234 136577299 -19052821 - B4A SINE B4 -226 66 2 1 1627 228 323 71 80 chr4 136577299 136577511 -19052609 - L2c LINE L2 -257 3130 2921 1 1627 638 223 7 14 chr4 136578333 136578474 -19051646 + B3 SINE B2 68 207 -9 1 1627 731 220 33 0 chr4 136579106 136579256 -19050864 - B3 SINE B2 -8 208 54 1 1627 434 200 13 0 chr4 136579254 136579329 -19050791 - B3 SINE B2 -110 106 31 1 1627 371 271 95 56 chr4 136579537 136579822 -19050298 + L1MEd LINE L1 48 343 -5776 1 1627 229 311 67 96 chr4 136580431 136580566 -19049554 - MIRb SINE MIR -74 194 64 1 1627 634 286 93 42 chr4 136580680 136580939 -19049181 + B4A SINE B4 2 273 -19 1 1627 225 100 0 0 chr4 136581570 136581608 -19048512 + B1_Mur2 SINE Alu 73 139 -10 1 1627 3345 239 49 32 chr4 136581903 136583092 -19047028 + RMER1A Other Other 3 851 -179 1 1627 247 271 17 0 chr4 136583269 136583328 -19046792 + ID4 SINE ID 13 72 -11 1 1627 261 214 18 18 chr4 136585433 136585490 -19044630 - MIR3 SINE MIR -43 165 109 1 1627 228 386 34 20 chr4 136586172 136586320 -19043800 - MIRm SINE MIR -108 168 19 1 1627 276 293 1 45 chr4 136586512 136586593 -19043527 - ID4 SINE ID -64 88 13 1 1627 223 256 22 109 chr4 136586515 136586607 -19043513 - B4 SINE B4 -205 87 4 1 1627 213 259 17 69 chr4 136586613 136586671 -19043449 - B1F1 SINE Alu -6 143 89 1 1627 209 257 123 45 chr4 136586841 136586996 -19043124 - MIRb SINE MIR -88 180 14 1 1627 578 222 32 0 chr4 136587002 136587128 -19042992 - MER5A1 DNA MER1_type -5 161 32 1 1627 621 297 105 29 chr4 136587761 136588148 -19041972 + LTR53 LTR ERVL 1 519 0 1 1627 454 291 70 38 chr4 136588204 136588390 -19041730 - MIRb SINE MIR -36 232 41 1 1627 295 233 32 32 chr4 136588432 136588494 -19041626 - RSINE1 SINE B4 -22 143 82 1 1627 1202 265 92 32 chr4 136588494 136588880 -19041240 + MTD LTR MaLR 14 419 0 1 1627 246 254 72 29 chr4 136588880 136588947 -19041173 - RSINE1 SINE B4 -85 80 11 1 1627 322 286 105 18 chr4 136589144 136589258 -19040862 - MamRep605 Unknown Unknown -46 830 707 1 1627 1147 171 5 48 chr4 136590465 136590674 -19039446 + B3 SINE B2 15 214 -2 1 1627 309 241 93 51 chr4 136591025 136591143 -19038977 + L1M5 LINE L1 5699 5821 -303 1 1627 243 342 0 48 chr4 136591152 136591235 -19038885 + ID4_ SINE ID 3 81 -2 1 1627 282 281 18 67 chr4 136591241 136591312 -19038808 + L1MB7 LINE L1 5097 5166 -980 1 1627 435 191 114 0 chr4 136591312 136591417 -19038703 + PB1D10 SINE Alu 1 117 0 1 1627 282 281 18 67 chr4 136591417 136591509 -19038611 + L1MB7 LINE L1 5167 5252 -894 1 1627 292 244 37 0 chr4 136591678 136591760 -19038360 + L1MB7 LINE L1 5536 5620 -560 1 1627 307 288 122 38 chr4 136591841 136592054 -19038066 + L1MB7 LINE L1 5613 5843 -331 1 1627 337 240 226 37 chr4 136592078 136592268 -19037852 + L1MB7 LINE L1 5941 6166 -18 1 1627 192 152 0 0 chr4 136592323 136592356 -19037764 + CT-rich Low_complexity Low_complexity 3 35 0 1 1627 742 226 0 7 chr4 136592369 136592507 -19037613 - B1_Mur2 SINE Alu -8 141 5 1 1627 343 296 41 0 chr4 136592542 136592640 -19037480 - PB1D10 SINE Alu -15 102 1 1 1627 286 238 32 51 chr4 136592822 136592924 -19037196 - ID4 SINE ID -52 100 2 1 1627 654 296 40 40 chr4 136592970 136593192 -19036928 + ID_B1 SINE B4 1 222 -2 1 1627 409 247 176 47 chr4 136593685 136593855 -19036265 + B3A SINE B2 1 192 -6 1 1627 303 336 51 29 chr4 136594644 136594782 -19035338 + MIR SINE MIR 44 184 -78 1 1627 365 277 274 25 chr4 136595429 136595703 -19034417 - MER2 DNA MER2_type -1 344 3 1 1627 232 344 103 31 chr4 136595783 136595978 -19034142 - MIRc SINE MIR -4 264 53 1 1627 232 204 74 0 chr4 136596146 136596200 -19033920 + ID SINE ID 29 86 -138 1 1627 261 315 0 0 chr4 136599027 136599081 -19031039 + ID4_ SINE ID 30 83 0 1 1627 236 185 0 18 chr4 136599099 136599154 -19030966 + A-rich Low_complexity Low_complexity 2 55 0 1 1627 505 237 26 0 chr4 136599176 136599290 -19030830 + ID_B1 SINE B4 106 222 -2 1 1627 315 254 176 38 chr4 136600869 136600884 -19029236 - B1_Mur2 SINE Alu 0 149 138 1 1627 333 0 0 0 chr4 136600884 136600921 -19029199 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1627 326 243 119 21 chr4 136600921 136601036 -19029084 - B1_Mus2 SINE Alu -12 137 1 1 1627 287 315 22 11 chr4 136601152 136601242 -19028878 + ID_B1 SINE B4 1 91 -133 1 1627 354 315 66 40 chr4 136601343 136601495 -19028625 + RSINE1 SINE B4 3 158 -7 1 1627 328 75 60 0 chr4 136601538 136601605 -19028515 + (TCTCTG)n Simple_repeat Simple_repeat 3 73 0 1 1627 21 0 0 0 chr4 136601619 136601640 -19028480 + AT_rich Low_complexity Low_complexity 1 21 0 1 1627 234 0 0 0 chr4 136601959 136601985 -19028135 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1627 237 238 15 31 chr4 136602360 136602425 -19027695 + MIR SINE MIR 199 262 0 1 1627 477 272 10 0 chr4 136602475 136602578 -19027542 + PB1D10 SINE Alu 1 104 -13 1 1627 1215 61 0 0 chr4 136602813 136602960 -19027160 + B1_Mus2 SINE Alu 1 147 0 1 1627 306 250 40 0 chr4 136602977 136603053 -19027067 + PB1D10 SINE Alu 1 79 -38 1 1627 615 244 0 0 chr4 136603061 136603229 -19026891 + (TA)n Simple_repeat Simple_repeat 2 169 0 1 1627 832 149 0 33 chr4 136603242 136603422 -19026698 + (TA)n Simple_repeat Simple_repeat 1 174 0 1 1627 216 280 0 0 chr4 136603422 136603472 -19026648 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 1 1627 258 119 24 0 chr4 136603476 136603518 -19026602 + ID_B1 SINE B4 177 219 -5 1 1627 243 154 67 32 chr4 136603518 136603553 -19026567 + B1F SINE Alu 70 149 0 1 1627 738 283 73 123 chr4 136605475 136605543 -19024577 - MTE2a LTR MaLR 0 419 365 1 1627 488 231 110 8 chr4 136605543 136605626 -19024494 + B1_Mur2 SINE Alu 1 85 -64 1 1627 459 0 0 0 chr4 136605626 136605677 -19024443 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1627 488 231 110 8 chr4 136605677 136605711 -19024409 + B1_Mur2 SINE Alu 86 129 -20 1 1627 847 275 49 133 chr4 136605711 136606066 -19024054 - MTE2a LTR MaLR -55 364 18 1 1627 379 219 12 12 chr4 136606567 136606650 -19023470 - ID4 SINE ID 0 83 1 1 1627 612 292 14 7 chr4 136606711 136606849 -19023271 + RSINE1 SINE B4 9 147 -18 1 1627 600 250 38 19 chr4 136606897 136607056 -19023064 + RSINE1 SINE B4 4 165 0 1 1627 826 211 17 34 chr4 136607335 136607498 -19022622 + B3 SINE B2 1 162 -54 1 1627 465 76 0 0 chr4 136607498 136607564 -19022556 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1627 826 211 17 34 chr4 136607564 136607577 -19022543 + B3 SINE B2 163 174 -42 1 1627 634 248 217 22 chr4 136607891 136608167 -19021953 - Lx8 LINE L1 -326 7147 6818 1 1627 241 316 26 0 chr4 136608515 136608591 -19021529 + ID4 SINE ID 5 82 -1 1 1627 830 154 0 23 chr4 136608837 136608970 -19021150 + B3 SINE B2 1 130 -86 1 1627 786 223 22 110 chr4 136609013 136609217 -19020903 + B3A SINE B2 30 198 0 1 1627 279 306 60 0 chr4 136609219 136609318 -19020802 - MIR SINE MIR -142 126 22 1 1627 365 308 15 37 chr4 136609356 136609491 -19020629 - L1MC3 LINE L1 -1139 6646 6515 1 1627 561 239 17 0 chr4 136610774 136610891 -19019229 - Tigger1 DNA MER2_type -240 2178 2060 1 1627 1839 190 62 0 chr4 136610892 136611229 -19018891 + MTC LTR MaLR 1 358 -63 1 1627 346 253 27 0 chr4 136611263 136611338 -19018782 - ID4_ SINE ID -5 78 2 1 1627 748 247 80 22 chr4 136611348 136611572 -19018548 - Tigger1 DNA MER2_type -1014 1404 1168 1 1627 440 297 34 5 chr4 136611950 136612172 -19017948 - L1PB4 LINE L1 -203 5953 5657 1 1627 468 274 112 75 chr4 136612171 136612576 -19017544 - L1_Mur3 LINE L1 -400 5480 5063 1 1627 265 237 73 110 chr4 136612579 136612596 -19017524 + MT2B LTR ERVL 153 165 -436 1 1627 512 204 88 9 chr4 136612596 136612710 -19017410 + B1_Mus2 SINE Alu 2 124 -23 1 1627 430 82 13 10 chr4 136612717 136612795 -19017325 + B1_Mus2 SINE Alu 51 123 -24 1 1627 605 60 0 12 chr4 136612794 136612878 -19017242 + B1_Mur4 SINE Alu 66 148 -2 1 1627 1249 286 88 9 chr4 136612897 136613543 -19016577 - L1M2 LINE L1 -1054 5089 4393 1 1627 502 182 59 20 chr4 136613546 136613560 -19016560 - B1_Mur2 SINE Alu 0 149 137 1 1627 243 0 0 0 chr4 136613560 136613587 -19016533 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1627 502 182 59 20 chr4 136613587 136613673 -19016447 - B1_Mur2 SINE Alu -13 136 45 1 1627 262 180 40 0 chr4 136613680 136613730 -19016390 - Tigger1 DNA MER2_type -1244 1174 1123 1 1627 1714 227 42 3 chr4 136613730 136614088 -19016032 + MTE2b LTR MaLR 1 372 -7 1 1627 1787 128 40 17 chr4 136614167 136614469 -19015651 + ORR1A4 LTR MaLR 21 329 0 1 1627 1332 271 84 18 chr4 136614565 136615219 -19014901 - Tigger1 DNA MER2_type -1610 808 57 1 1627 495 275 9 2 chr4 136615258 136615397 -19014723 + Lx7 LINE L1 5623 5761 -1236 1 1627 465 246 0 0 chr4 136615397 136615625 -19014495 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 1627 302 292 0 6 chr4 136615645 136615824 -19014296 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1627 228 111 0 0 chr4 136615855 136615891 -19014229 + (CG)n Simple_repeat Simple_repeat 2 37 0 1 1627 324 0 0 0 chr4 136615891 136615926 -19014194 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1627 296 286 82 25 chr4 136615929 136616087 -19014033 + Lx8 LINE L1 5761 5927 -1546 1 1627 23 33 0 0 chr4 136616170 136616200 -19013920 + AT_rich Low_complexity Low_complexity 1 30 0 1 1627 7359 146 43 27 chr4 136616305 136617687 -19012433 + RMER12B LTR ERVK 1 1227 -177 1 1627 494 174 25 31 chr4 136617688 136617848 -19012272 + (TATG)n Simple_repeat Simple_repeat 2 160 0 1 1627 317 70 69 17 chr4 136617848 136617906 -19012214 + RMER12B LTR ERVK 1200 1260 -144 1 1627 303 105 0 269 chr4 136617874 136617978 -19012142 + RMER12B LTR ERVK 1176 1251 -153 1 1627 414 0 0 0 chr4 136617978 136618024 -19012096 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1627 330 294 0 0 chr4 136618457 136618542 -19011578 + PB1D7 SINE Alu 29 113 -7 1 1627 2724 166 40 29 chr4 136618688 136619235 -19010885 - RMER1B Other Other -3 1063 511 2 1627 634 274 68 50 chr4 136619679 136619898 -19010222 - ID_B1 SINE B4 0 224 2 2 1627 433 333 0 0 chr4 136619965 136620076 -19010044 - PB1D10 SINE Alu -6 111 1 2 1627 2514 77 3 3 chr4 136620097 136620423 -19009697 - ORR1A2 LTR MaLR -1 326 1 2 1627 260 242 177 10 chr4 136620853 136620949 -19009171 + L2a LINE L2 3031 3142 -284 2 1627 426 197 0 0 chr4 136620950 136621021 -19009099 - ID4 SINE ID 0 83 13 2 1627 357 310 0 0 chr4 136621058 136621174 -19008946 - PB1D10 SINE Alu -1 116 1 2 1627 291 194 0 0 chr4 136621280 136621373 -19008747 + (TCTG)n Simple_repeat Simple_repeat 2 94 0 2 1627 1043 269 20 4 chr4 136621376 136621622 -19008498 - B4A SINE B4 -2 290 41 2 1627 192 352 124 0 chr4 136621622 136621727 -19008393 + L2a LINE L2 3220 3337 -89 2 1627 240 320 39 10 chr4 136621923 136622027 -19008093 - L2c LINE L2 -3 3384 3278 2 1627 1365 79 11 0 chr4 136622077 136622254 -19007866 + B2_Mm1t SINE B2 1 179 -14 2 1627 476 62 302 59 chr4 136622320 136622439 -19007681 + B2_Mm2 SINE B2 47 194 -1 2 1627 582 224 66 22 chr4 136622445 136622582 -19007538 + RSINE1 SINE B4 4 146 -19 2 1627 486 0 0 0 chr4 136622589 136622643 -19007477 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1627 276 286 0 0 chr4 136622655 136622718 -19007402 + ID_B1 SINE B4 87 149 -75 2 1627 217 294 125 19 chr4 136622718 136622759 -19007361 + PB1D9 SINE Alu 6 120 0 2 1627 404 203 0 3 chr4 136623041 136623123 -19006997 - B1F SINE Alu -18 102 23 2 1627 189 0 0 0 chr4 136623123 136623144 -19006976 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2 1627 300 297 11 0 chr4 136623144 136623163 -19006957 - PB1D9 SINE Alu -98 22 3 2 1627 236 323 149 8 chr4 136623176 136623310 -19006810 - MIRb SINE MIR -112 156 4 2 1627 559 189 168 0 chr4 136623812 136623955 -19006165 + Lx4A LINE L1 6890 7056 -2 2 1627 1139 68 0 7 chr4 136623964 136624112 -19006008 + B1_Mus2 SINE Alu 1 147 0 2 1627 616 288 117 4 chr4 136624584 136624874 -19005246 - MTE2b LTR MaLR -36 343 1 2 1627 382 226 52 41 chr4 136624998 136625095 -19005025 + B1F1 SINE Alu 1 98 -51 2 1627 502 91 0 48 chr4 136625272 136625376 -19004744 + (GGGTG)n Simple_repeat Simple_repeat 3 101 0 2 1627 640 215 6 11 chr4 136626041 136626215 -19003905 + CT-rich Low_complexity Low_complexity 2 174 0 2 1627 200 59 29 0 chr4 136626314 136626348 -19003772 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1627 351 142 0 39 chr4 136626363 136626430 -19003690 - B2_Mm2 SINE B2 -107 109 47 2 1627 1210 77 6 0 chr4 136626470 136626626 -19003494 - B2_Mm1t SINE B2 -36 157 1 2 1627 426 255 0 9 chr4 136626650 136626757 -19003363 - PB1D10 SINE Alu -11 106 1 2 1627 381 224 26 0 chr4 136627552 136627628 -19002492 - ID2 SINE ID -1 82 5 2 1627 183 392 70 19 chr4 136627705 136627861 -19002259 + MIRb SINE MIR 36 199 -69 2 1627 785 71 122 30 chr4 136628102 136628233 -19001887 - URR1A DNA MER1_type -5 221 79 2 1627 909 252 76 0 chr4 136628300 136628498 -19001622 + ID_B1 SINE B4 12 224 0 2 1627 213 154 0 0 chr4 136628498 136628537 -19001583 + GA-rich Low_complexity Low_complexity 1 39 0 2 1627 372 273 11 11 chr4 136629136 136629322 -19000798 + (TGGA)n Simple_repeat Simple_repeat 1 186 0 2 1627 1182 125 3 10 chr4 136629607 136629998 -19000122 + (TCCA)n Simple_repeat Simple_repeat 1 388 0 2 1627 444 257 9 13 chr4 136630090 136630411 -18999709 + (TCCA)n Simple_repeat Simple_repeat 1 319 0 2 1627 202 331 14 34 chr4 136630441 136630588 -18999532 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 2 1627 230 337 124 0 chr4 136630593 136630682 -18999438 - L2b LINE L2 -4 3371 3272 2 1627 243 0 0 0 chr4 136630687 136630714 -18999406 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1627 1095 66 7 0 chr4 136630714 136630851 -18999269 - B1_Mus1 SINE Alu -10 138 1 2 1627 447 78 0 0 chr4 136631004 136631068 -18999052 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1627 684 56 0 0 chr4 136631239 136631328 -18998792 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1627 450 0 0 0 chr4 136631462 136631512 -18998608 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1627 284 350 24 8 chr4 136632524 136632648 -18997472 - MIRc SINE MIR -106 162 37 2 1627 868 255 4 62 chr4 136633977 136634203 -18995917 - MT2B LTR ERVL 0 601 389 2 1627 2132 192 77 44 chr4 136634206 136634701 -18995419 + RLTR20B3 LTR ERVK 21 531 -46 2 1627 430 207 62 41 chr4 136634703 136634840 -18995280 - MT2B LTR ERVL -303 230 136 2 1627 807 214 57 62 chr4 136634768 136634977 -18995143 + MTD LTR MaLR 210 417 -2 2 1627 994 250 21 13 chr4 136634981 136635220 -18994900 + B4A SINE B4 30 270 -22 2 1627 187 220 19 57 chr4 136635294 136635347 -18994773 + MER5B DNA MER1_type 60 110 -68 2 1627 425 333 42 18 chr4 136635405 136635573 -18994547 - MER58A DNA MER1_type -1 223 52 2 1627 299 307 69 17 chr4 136635641 136635757 -18994363 - MIRm SINE MIR -120 156 35 2 1627 452 18 18 0 chr4 136636077 136636134 -18993986 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1627 219 216 0 0 chr4 136636645 136636682 -18993438 + (CCCA)n Simple_repeat Simple_repeat 1 37 0 2 1627 934 137 6 22 chr4 136636683 136636862 -18993258 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 2 1627 287 270 11 11 chr4 136636915 136637091 -18993029 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 2 1627 568 282 45 0 chr4 136637592 136637794 -18992326 + L1MB5 LINE L1 5798 6008 -166 2 1627 566 216 223 4 chr4 136637923 136638053 -18992067 + ID_B1 SINE B4 73 220 -72 2 1627 286 214 0 18 chr4 136638850 136638907 -18991213 + RSINE1 SINE B4 42 97 -68 2 1627 1502 68 5 0 chr4 136639291 136639481 -18990639 - B2_Mm1a SINE B2 -2 191 1 2 1627 875 243 98 71 chr4 136639732 136639981 -18990139 - L1MA5 LINE L1 -271 6029 5790 2 1627 1192 265 128 0 chr4 136639981 136640317 -18989803 - MTEa LTR MaLR 0 379 1 2 1627 875 243 98 71 chr4 136640317 136640475 -18989645 - L1MA5 LINE L1 -511 5789 5611 2 1627 300 83 0 0 chr4 136640573 136640621 -18989499 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 2 1627 235 282 56 0 chr4 136640631 136640702 -18989418 + L1M2 LINE L1 5690 5764 -527 2 1627 363 73 0 0 chr4 136640722 136640777 -18989343 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1627 182 158 51 26 chr4 136641767 136641806 -18988314 + MIRm SINE MIR 218 257 -19 2 1627 1529 205 100 0 chr4 136642703 136643044 -18987076 - MTEa LTR MaLR 0 379 5 2 1627 187 287 42 94 chr4 136643618 136643714 -18986406 + L2 LINE L2 2950 3040 -379 2 1627 221 286 167 0 chr4 136643958 136644042 -18986078 + MIRm SINE MIR 178 275 -1 2 1627 709 272 6 0 chr4 136644223 136644392 -18985728 + MIR SINE MIR 79 248 -14 2 1627 656 91 0 9 chr4 136644901 136645012 -18985108 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 1627 813 235 65 9 chr4 136645260 136645519 -18984601 + MTD LTR MaLR 152 421 0 2 1627 615 205 18 77 chr4 136645638 136645807 -18984313 + URR1B DNA MER1_type 1 159 -66 2 1627 711 159 35 35 chr4 136645783 136645926 -18984194 + URR1B DNA MER1_type 83 225 0 2 1627 199 321 0 0 chr4 136646398 136646454 -18983666 - L2 LINE L2 -360 3059 3004 2 1627 1061 236 14 0 chr4 136646569 136646789 -18983331 + ID_B1 SINE B4 2 224 0 2 1627 250 242 66 8 chr4 136648245 136648325 -18981795 - ORR1E LTR MaLR -13 366 282 2 1627 1254 240 92 56 chr4 136648335 136648692 -18981428 + ORR1E LTR MaLR 1 370 0 2 1627 3838 265 93 75 chr4 136648692 136650036 -18980084 + ORR1E-int LTR MaLR 1 1368 -2 2 1627 1274 229 95 19 chr4 136650038 136650363 -18979757 + ORR1E LTR MaLR 1 350 -9 2 1627 659 268 55 27 chr4 136650387 136650606 -18979514 - ORR1E LTR MaLR -120 239 15 2 1627 458 237 0 38 chr4 136651009 136651193 -18978927 + (TATG)n Simple_repeat Simple_repeat 4 180 0 2 1627 303 323 59 15 chr4 136651439 136651574 -18978546 + MIR SINE MIR 45 185 -77 2 1627 2997 64 8 0 chr4 136651839 136652213 -18977907 + L1_Mus1 LINE L1 6191 6567 0 2 1627 317 349 111 15 chr4 136653099 136653297 -18976823 + MIR SINE MIR 23 239 -23 2 1627 552 30 0 0 chr4 136654254 136654320 -18975800 + (GGA)n Simple_repeat Simple_repeat 2 67 0 2 1627 248 266 25 25 chr4 136654600 136654681 -18975439 - ID4_ SINE ID -2 81 1 2 1627 321 313 128 17 chr4 136654682 136654861 -18975259 - L1ME1 LINE L1 -21 6158 5960 2 1627 301 136 1 30 chr4 136655199 136655273 -18974847 + B1_Mus2 SINE Alu 32 133 -16 2 1627 200 200 0 0 chr4 136655273 136655308 -18974812 + GA-rich Low_complexity Low_complexity 2 36 0 2 1627 290 291 19 146 chr4 136655454 136655667 -18974453 + ORR1E LTR MaLR 174 359 0 2 1627 4015 131 9 42 chr4 136655728 136656392 -18973728 + RLTR26 LTR ERVK 1 642 0 2 1627 201 254 18 0 chr4 136657005 136657060 -18973060 + GA-rich Low_complexity Low_complexity 4 59 0 2 1627 243 257 56 14 chr4 136657181 136657252 -18972868 + MER5B DNA MER1_type 98 171 -7 2 1627 309 319 48 12 chr4 136657724 136657892 -18972228 - MIR SINE MIR -56 206 33 2 1627 241 322 23 90 chr4 136658379 136658512 -18971608 - B1F1 SINE Alu -25 124 1 2 1627 281 273 0 0 chr4 136658447 136658513 -18971607 - ID_B1 SINE B4 -78 146 81 2 1627 324 0 0 0 chr4 136658539 136658575 -18971545 + (CAGT)n Simple_repeat Simple_repeat 2 37 0 2 1627 216 0 0 0 chr4 136658575 136658599 -18971521 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1627 369 0 0 0 chr4 136658599 136658640 -18971480 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1627 668 265 77 39 chr4 136658732 136658940 -18971180 - B3 SINE B2 0 216 1 2 1627 359 313 80 44 chr4 136659915 136660052 -18970068 + RSINE1 SINE B4 19 160 -5 2 1627 225 0 0 0 chr4 136660073 136660098 -18970022 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1627 873 200 105 0 chr4 136661893 136662083 -18968037 - B3 SINE B2 -6 210 1 2 1627 1791 206 17 20 chr4 136662087 136662444 -18967676 - MTEa LTR MaLR -20 359 4 2 1627 304 270 33 11 chr4 136662600 136662690 -18967430 - MLT1K LTR MaLR -4 591 500 3 1627 432 305 76 47 chr4 136662767 136662939 -18967181 - MLT1K LTR MaLR -256 339 163 3 1627 507 284 64 49 chr4 136662932 136662976 -18967144 - CYRA11_Mm Unknown Y-chromosome -220 397 268 3 1627 1108 152 17 0 chr4 136662976 136663154 -18966966 + URR1A DNA MER1_type 46 226 0 3 1627 507 284 64 49 chr4 136663154 136663199 -18966921 - CYRA11_Mm Unknown Y-chromosome -220 267 127 3 1627 1017 266 11 53 chr4 136664077 136664255 -18965865 - MTEa LTR MaLR -47 332 155 3 1627 450 36 0 0 chr4 136664255 136664311 -18965809 + (TTCA)n Simple_repeat Simple_repeat 3 58 0 3 1627 1017 266 11 53 chr4 136664311 136664394 -18965726 - MTEa LTR MaLR -225 154 82 3 1627 228 188 0 72 chr4 136664412 136664481 -18965639 + Lx8 LINE L1 7408 7471 -2 3 1627 226 280 118 68 chr4 136666220 136666381 -18963739 - MLT1K LTR MaLR -73 522 354 3 1627 1128 270 91 24 chr4 136666804 136667007 -18963113 - MTE2b LTR MaLR 0 379 150 3 1627 4814 117 39 14 chr4 136667007 136667744 -18962376 - RMER6A LTR ERVK 0 756 1 3 1627 1075 275 97 29 chr4 136667744 136667881 -18962239 - MTE2b LTR MaLR -224 155 16 3 1627 222 116 0 0 chr4 136668090 136668133 -18961987 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1627 196 282 106 49 chr4 136668301 136668424 -18961696 + MIRm SINE MIR 18 150 -126 3 1627 293 336 9 0 chr4 136668652 136668759 -18961361 + CT-rich Low_complexity Low_complexity 1 108 0 3 1627 572 271 0 0 chr4 136668759 136668877 -18961243 - PB1D7 SINE Alu -2 118 1 3 1627 877 222 97 5 chr4 136668913 136669108 -18961012 + ID_B1 SINE B4 8 220 -4 3 1627 450 0 0 0 chr4 136669457 136669507 -18960613 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1627 204 358 0 47 chr4 136669799 136669884 -18960236 - L2c LINE L2 -3 3384 3304 3 1627 4475 123 72 45 chr4 136670024 136670952 -18959168 - RMER17B LTR ERVK -4 954 2 3 1627 1453 78 5 16 chr4 136671406 136671600 -18958520 + B2_Mm1a SINE B2 2 193 0 3 1627 23 0 0 0 chr4 136671606 136671629 -18958491 + AT_rich Low_complexity Low_complexity 1 23 0 3 1627 424 224 128 8 chr4 136671835 136671952 -18958168 + B3A SINE B2 16 146 -52 3 1627 238 283 136 65 chr4 136671975 136672130 -18957990 + L1MA5 LINE L1 6135 6300 0 3 1627 320 252 253 18 chr4 136672149 136672183 -18957937 + L1MD LINE L1 3022 3083 -3063 3 1627 1157 68 0 7 chr4 136672183 136672330 -18957790 + B1_Mus1 SINE Alu 3 148 0 3 1627 320 252 253 18 chr4 136672330 136672461 -18957659 + L1MD LINE L1 3074 3226 -2917 3 1627 244 250 79 55 chr4 136672568 136672695 -18957425 - MER34 LTR ERV1 -38 504 375 3 1627 448 259 8 17 chr4 136675270 136675388 -18954732 + PB1D10 SINE Alu 1 117 0 3 1627 463 188 104 0 chr4 136675441 136675537 -18954583 + ID_B1 SINE B4 8 113 -111 3 1627 1044 214 73 0 chr4 136675898 136676104 -18954016 + ID_B1 SINE B4 2 222 -2 3 1627 528 16 0 0 chr4 136676115 136676176 -18953944 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 1627 267 310 0 0 chr4 136676176 136676247 -18953873 + ID_B1 SINE B4 100 170 -54 3 1627 260 307 34 11 chr4 136676247 136676259 -18953861 + PB1D10 SINE Alu 19 104 -13 3 1627 189 0 0 0 chr4 136676259 136676280 -18953840 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1627 1028 58 0 14 chr4 136676287 136676428 -18953692 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 3 1627 874 268 64 116 chr4 136676471 136676859 -18953261 - MTE2a LTR MaLR -11 368 1 3 1627 599 294 6 24 chr4 136676859 136677002 -18953118 + RSINE1 SINE B4 26 165 0 3 1627 305 244 8 0 chr4 136677019 136677142 -18952978 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 1627 7218 40 4 3 chr4 136678181 136679096 -18951024 - L1Md_F3 LINE L1 -15 6569 5654 3 1627 7023 30 0 0 chr4 136679091 136679953 -18950167 + L1Md_F3 LINE L1 4719 5580 -303 3 1627 292 200 14 54 chr4 136680157 136680231 -18949889 + B4 SINE B4 14 84 -208 3 1627 198 0 0 0 chr4 136680232 136680254 -18949866 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1627 550 255 60 0 chr4 136680282 136680431 -18949689 + B4 SINE B4 84 241 -51 3 1627 192 40 0 0 chr4 136680873 136680898 -18949222 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 3 1627 744 249 29 38 chr4 136680927 136681136 -18948984 - B3 SINE B2 -1 215 9 3 1627 238 278 51 77 chr4 136681332 136681449 -18948671 + L1MD3 LINE L1 7730 7843 -152 3 1627 488 246 209 13 chr4 136681786 136682021 -18948099 + B4A SINE B4 1 281 -11 3 1627 582 15 0 0 chr4 136682032 136682099 -18948021 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1627 255 297 241 8 chr4 136682294 136682626 -18947494 + L2a LINE L2 2718 3138 -288 3 1627 568 239 162 108 chr4 136682821 136683098 -18947022 + B4A SINE B4 1 292 0 3 1627 429 194 23 11 chr4 136683132 136683309 -18946811 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1627 259 195 8 34 chr4 136683327 136683444 -18946676 + (CA)n Simple_repeat Simple_repeat 2 115 0 3 1627 465 19 0 0 chr4 136683450 136683504 -18946616 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1627 247 225 53 16 chr4 136684513 136684602 -18945518 + MIR SINE MIR 62 151 -117 3 1627 250 355 0 0 chr4 136684980 136685056 -18945064 + MIRb SINE MIR 114 189 -79 3 1627 400 202 345 0 chr4 136686175 136686294 -18943826 + B3A SINE B2 1 160 -38 3 1627 456 77 0 0 chr4 136686303 136686368 -18943752 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1627 201 74 0 0 chr4 136686368 136686394 -18943726 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1627 565 185 0 77 chr4 136686423 136686540 -18943580 + B1_Mur2 SINE Alu 23 130 -19 3 1627 513 0 0 0 chr4 136687114 136687171 -18942949 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1627 603 0 0 0 chr4 136687171 136687237 -18942883 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1627 318 233 6 30 chr4 136687830 136687994 -18942126 + (TCCA)n Simple_repeat Simple_repeat 3 162 0 3 1627 701 234 19 23 chr4 136688020 136688329 -18941791 + (TCCA)n Simple_repeat Simple_repeat 1 307 0 3 1627 444 135 0 0 chr4 136690054 136690128 -18939992 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1627 378 268 163 0 chr4 136690449 136690572 -18939548 + ID_B1 SINE B4 81 223 -1 3 1627 215 267 0 16 chr4 136692917 136692978 -18937142 + MIRc SINE MIR 88 147 -121 3 1627 288 0 0 0 chr4 136693060 136693092 -18937028 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1627 279 0 0 0 chr4 136693805 136693836 -18936284 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1627 477 0 0 0 chr4 136694682 136694735 -18935385 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1627 293 309 15 53 chr4 136694873 136695006 -18935114 + MIR SINE MIR 39 166 -96 3 1627 266 309 0 12 chr4 136695339 136695421 -18934699 - MIR SINE MIR -84 124 44 3 1627 261 57 0 0 chr4 136695892 136695927 -18934193 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3 1627 362 21 0 21 chr4 136696090 136696138 -18933982 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 3 1627 1294 169 146 6 chr4 136696146 136696467 -18933653 - RMER10A LTR ERVL -12 430 65 3 1627 217 220 0 39 chr4 136696842 136696894 -18933226 - RSINE1 SINE B4 -115 50 1 3 1627 420 283 79 46 chr4 136696920 136697072 -18933048 - RSINE1 SINE B4 -8 157 1 3 1627 1119 271 25 11 chr4 136697660 136697943 -18932177 - B4A SINE B4 -4 288 2 3 1627 249 326 0 34 chr4 136698805 136698894 -18931226 - MER112 DNA MER1_type -175 86 1 3 1627 334 348 8 0 chr4 136699019 136699137 -18930983 + L3 LINE CR1 4317 4435 -54 3 1627 633 347 75 0 chr4 136700015 136700109 -18930011 + B4 SINE B4 1 103 -189 3 1627 315 0 0 0 chr4 136700109 136700144 -18929976 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1627 633 347 75 0 chr4 136700144 136700317 -18929803 + B4 SINE B4 104 287 -5 3 1627 547 294 122 44 chr4 136700580 136700900 -18929220 - MLT1C LTR MaLR -80 387 43 3 1627 878 85 36 6 chr4 136700903 136701068 -18929052 + (TCTA)n Simple_repeat Simple_repeat 2 171 0 3 1627 344 85 119 0 chr4 136701068 136701127 -18928993 - ORR1B1 LTR MaLR -5 389 324 3 1627 268 258 8 23 chr4 136701187 136701318 -18928802 + (TA)n Simple_repeat Simple_repeat 1 129 0 3 1627 244 215 231 0 chr4 136701338 136701403 -18928717 - ID4_ SINE ID -2 81 2 3 1627 1050 125 0 0 chr4 136701553 136701729 -18928391 + (TGGA)n Simple_repeat Simple_repeat 1 176 0 3 1627 933 228 0 0 chr4 136701730 136702082 -18928038 + (TAGA)n Simple_repeat Simple_repeat 1 352 0 3 1627 946 265 16 12 chr4 136703024 136703272 -18926848 + B4A SINE B4 4 252 -40 3 1627 267 31 0 0 chr4 136703275 136703307 -18926813 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1627 438 279 58 7 chr4 136703393 136703530 -18926590 + MIRc SINE MIR 47 190 -78 3 1627 317 337 71 27 chr4 136704330 136704513 -18925607 + L2a LINE L2 2947 3137 -289 3 1627 293 333 0 0 chr4 136704589 136704673 -18925447 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1627 755 266 66 25 chr4 136704673 136704916 -18925204 - B4 SINE B4 0 292 40 3 1627 1116 142 0 7 chr4 136705062 136705366 -18924754 + (TG)n Simple_repeat Simple_repeat 1 301 0 3 1627 382 322 75 0 chr4 136705385 136705559 -18924561 - L1MEc LINE L1 -2490 3829 3643 3 1627 207 0 0 0 chr4 136705622 136705645 -18924475 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 1627 326 260 10 77 chr4 136705645 136705749 -18924371 - PB1D9 SINE Alu -18 102 6 3 1627 282 282 60 22 chr4 136705831 136705965 -18924155 - L1MA7 LINE L1 -23 6268 6130 3 1627 296 217 39 115 chr4 136706003 136706107 -18924013 - B1F SINE Alu -51 98 3 3 1627 987 203 42 0 chr4 136706169 136706361 -18923759 - B3 SINE B2 -13 203 4 3 1627 255 353 26 22 chr4 136706497 136706728 -18923392 - L1MEc LINE L1 -4649 1766 1453 3 1627 358 335 50 27 chr4 136706765 136706986 -18923134 - B4A SINE B4 -9 283 58 3 1627 232 146 0 0 chr4 136706967 136707008 -18923112 - B3A SINE B2 -157 41 1 3 1627 671 256 36 66 chr4 136707030 136707288 -18922832 - B4 SINE B4 -46 246 1 3 1627 24 32 0 0 chr4 136707319 136707350 -18922770 + AT_rich Low_complexity Low_complexity 1 31 0 3 1627 21 71 0 0 chr4 136707373 136707415 -18922705 + AT_rich Low_complexity Low_complexity 1 42 0 3 1627 872 222 16 11 chr4 136707415 136707602 -18922518 - B3 SINE B2 -27 189 2 3 1627 297 330 159 31 chr4 136707624 136708046 -18922074 - L1MEc LINE L1 -5484 916 441 3 1628 859 238 16 16 chr4 136708338 136708516 -18921604 + B3A SINE B2 3 183 -15 4 1628 537 16 0 0 chr4 136708516 136708578 -18921542 + (TATG)n Simple_repeat Simple_repeat 2 63 0 4 1628 859 238 16 16 chr4 136708578 136708591 -18921529 + B3A SINE B2 184 194 -4 4 1628 1412 70 32 0 chr4 136708882 136709068 -18921052 - B2_Mm2 SINE B2 -3 192 1 4 1628 616 90 30 0 chr4 136709130 136709230 -18920890 + (TCCCC)n Simple_repeat Simple_repeat 4 106 0 4 1628 188 281 92 15 chr4 136709486 136709551 -18920569 - L2b LINE L2 -10 3365 3296 4 1628 241 342 73 24 chr4 136709763 136709886 -18920234 + MLT1K LTR MaLR 381 509 -86 4 1628 452 255 0 19 chr4 136710593 136710701 -18919419 + PB1D10 SINE Alu 11 116 -1 4 1628 314 286 70 16 chr4 136711261 136711389 -18918731 - MER21B LTR ERV1 -309 554 420 4 1628 298 319 166 35 chr4 136711538 136711707 -18918413 - MER21B LTR ERV1 -654 209 19 4 1628 352 292 81 36 chr4 136712217 136712425 -18917695 - MIRb SINE MIR -21 247 20 4 1628 318 14 25 101 chr4 136713567 136713646 -18916474 + (TTTTG)n Simple_repeat Simple_repeat 2 74 0 4 1628 183 312 0 0 chr4 136713746 136713794 -18916326 - MIR SINE MIR -64 144 97 4 1628 253 295 0 0 chr4 136713858 136713919 -18916201 + MIRc SINE MIR 84 144 -124 4 1628 205 316 38 0 chr4 136715026 136715105 -18915015 - L4 LINE RTE -1 2028 1947 4 1628 251 146 0 0 chr4 136715274 136715315 -18914805 + MIR SINE MIR 220 260 -2 4 1628 205 241 26 14 chr4 136717286 136717368 -18912752 + L2b LINE L2 3088 3174 -252 4 1628 1112 128 26 5 chr4 136717849 136718038 -18912082 - URR1A DNA MER1_type 0 226 34 4 1628 201 39 0 0 chr4 136718233 136718259 -18911861 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 4 1628 818 306 77 18 chr4 136718294 136718707 -18911413 - L1MB2 LINE L1 -428 5872 5433 4 1628 437 296 44 15 chr4 136718710 136718847 -18911273 - B1F2 SINE Alu 0 149 9 4 1628 414 0 0 0 chr4 136721518 136721564 -18908556 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1628 1155 49 0 14 chr4 136722093 136722238 -18907882 + B1_Mm SINE Alu 5 147 0 4 1628 1223 236 19 103 chr4 136722264 136722633 -18907487 - MTE2b LTR MaLR -40 339 2 4 1628 184 243 0 0 chr4 136722657 136722694 -18907426 + MIR SINE MIR 116 152 -110 4 1628 765 276 68 17 chr4 136722821 136723057 -18907063 + B4A SINE B4 1 248 -44 4 1628 423 0 0 0 chr4 136723080 136723127 -18906993 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1628 228 35 0 0 chr4 136723279 136723308 -18906812 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1628 273 273 91 0 chr4 136723318 136723406 -18906714 - MIR SINE MIR -58 204 109 4 1628 213 132 0 0 chr4 136723446 136723484 -18906636 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 4 1628 254 299 0 33 chr4 136723514 136723625 -18906495 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 1628 195 42 0 0 chr4 136723625 136723649 -18906471 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1628 254 299 0 33 chr4 136723649 136723717 -18906403 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1628 487 208 183 0 chr4 136723738 136723858 -18906262 - RSINE1 SINE B4 -22 143 2 4 1628 297 243 0 14 chr4 136723983 136724054 -18906066 + ID4 SINE ID 5 74 -9 4 1628 286 212 207 57 chr4 136724314 136724454 -18905666 - MIRb SINE MIR -101 167 7 4 1628 369 244 12 6 chr4 136725644 136725805 -18904315 + (TGAA)n Simple_repeat Simple_repeat 1 162 0 4 1628 1151 89 16 0 chr4 136725898 136726161 -18903959 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 4 1628 313 304 19 13 chr4 136726287 136726381 -18903739 + AluG_3 SINE Alu 141 216 -95 4 1628 236 338 0 12 chr4 136726977 136727058 -18903062 - MIRc SINE MIR -80 188 109 4 1628 339 213 112 41 chr4 136727245 136727336 -18902784 + PB1D9 SINE Alu 9 107 -13 4 1628 210 71 0 0 chr4 136727336 136727364 -18902756 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1628 273 227 184 35 chr4 136727364 136727392 -18902728 + B1_Mm SINE Alu 116 146 -1 4 1628 1563 117 9 5 chr4 136727404 136727628 -18902492 + URR1B DNA MER1_type 1 225 0 4 1628 949 233 16 0 chr4 136727752 136727941 -18902179 + B3A SINE B2 1 192 -6 4 1628 1563 123 103 91 chr4 136729074 136729424 -18900696 + ORR1B1 LTR MaLR 41 394 0 4 1628 203 273 18 0 chr4 136729654 136729709 -18900411 + GA-rich Low_complexity Low_complexity 1 56 0 4 1628 648 295 0 0 chr4 136730510 136730659 -18899461 + RSINE1 SINE B4 12 160 -5 4 1628 1106 114 4 8 chr4 136730659 136730889 -18899231 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 4 1628 284 242 0 0 chr4 136731687 136731753 -18898367 + MIR SINE MIR 74 139 -123 4 1628 267 283 0 0 chr4 136732513 136732651 -18897469 + (CA)n Simple_repeat Simple_repeat 2 139 0 4 1628 189 0 0 0 chr4 136732773 136732794 -18897326 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1628 438 36 0 0 chr4 136733371 136733427 -18896693 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 1628 411 189 16 8 chr4 136733943 136734066 -18896054 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 1628 280 257 14 14 chr4 136734109 136734180 -18895940 + B4A SINE B4 187 257 -35 4 1628 240 292 48 77 chr4 136734193 136734297 -18895823 + MIR SINE MIR 92 192 -70 4 1628 215 240 62 5 chr4 136735347 136735444 -18894676 + MIR SINE MIR 66 176 -100 4 1628 813 21 0 0 chr4 136735580 136735675 -18894445 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1628 585 0 0 0 chr4 136735944 136736009 -18894111 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1628 307 380 33 11 chr4 136736954 136737135 -18892985 + MER58A DNA MER1_type 37 221 -3 4 1628 599 192 0 6 chr4 136737707 136737885 -18892235 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1628 201 171 0 0 chr4 136737894 136737929 -18892191 + (CATA)n Simple_repeat Simple_repeat 4 38 0 4 1628 777 22 0 0 chr4 136738019 136738110 -18892010 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 1628 353 231 13 0 chr4 136738112 136738190 -18891930 - ID4_ SINE ID -3 80 2 4 1628 468 246 113 23 chr4 136738193 136738326 -18891794 - B1F1 SINE Alu 0 149 5 4 1628 278 290 150 14 chr4 136739013 136739153 -18890967 + MIR3 SINE MIR 18 176 -32 4 1628 196 250 32 10 chr4 136739373 136739458 -18890662 + MIR SINE MIR 15 101 -175 4 1628 294 30 0 162 chr4 136739863 136740061 -18890059 + (GTCTG)n Simple_repeat Simple_repeat 3 168 0 4 1628 21 0 0 0 chr4 136740417 136740438 -18889682 + GC_rich Low_complexity Low_complexity 1 21 0 4 1628 207 231 0 44 chr4 136740567 136740635 -18889485 + G-rich Low_complexity Low_complexity 5 69 0 4 1628 331 253 46 0 chr4 136741045 136741132 -18888988 + ID_B1 SINE B4 97 187 -37 4 1628 226 277 147 35 chr4 136741193 136741309 -18888811 + B4 SINE B4 43 171 -121 4 1628 447 291 0 58 chr4 136741442 136741632 -18888488 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1628 263 179 0 15 chr4 136741655 136741723 -18888397 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1628 712 274 68 14 chr4 136743349 136743556 -18886564 + ID_B1 SINE B4 1 218 -6 4 1628 2099 153 68 46 chr4 136743592 136743962 -18886158 + ORR1C1 LTR MaLR 1 378 0 4 1628 314 295 177 83 chr4 136744009 136744201 -18885919 + B4A SINE B4 83 292 0 4 1628 528 193 0 0 chr4 136744201 136744320 -18885800 + (CA)n Simple_repeat Simple_repeat 1 119 0 4 1628 194 255 39 0 chr4 136744922 136744973 -18885147 + MIR SINE MIR 95 147 -61 4 1628 251 326 11 0 chr4 136745599 136745691 -18884429 - MER58A DNA MER1_type -103 121 29 4 1628 1006 52 8 0 chr4 136747104 136747238 -18882882 - MT2C_Mm LTR ERVL 0 475 341 4 1628 291 54 0 0 chr4 136747321 136747358 -18882762 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 4 1628 589 250 180 31 chr4 136747772 136747821 -18882299 - ID_B1 SINE B4 -1 223 178 4 1628 540 180 133 72 chr4 136747821 136748001 -18882119 - B2_Mm2 SINE B2 -3 192 2 4 1628 589 250 180 31 chr4 136748001 136748145 -18881975 - ID_B1 SINE B4 -47 177 1 4 1628 516 211 7 13 chr4 136748176 136748330 -18881790 + CT-rich Low_complexity Low_complexity 2 154 0 4 1628 326 128 0 0 chr4 136748343 136748390 -18881730 - B1F SINE Alu -54 95 49 4 1628 3498 30 2 2 chr4 136748892 136749288 -18880832 + MTA_Mm LTR MaLR 1 396 0 4 1628 318 327 0 9 chr4 136749864 136749972 -18880148 - MIR SINE MIR -72 136 30 4 1628 221 327 70 23 chr4 136750399 136750550 -18879570 + MIRm SINE MIR 2 157 -111 4 1628 343 308 36 27 chr4 136751284 136751394 -18878726 - PB1D7 SINE Alu -1 119 9 4 1628 468 216 13 7 chr4 136751544 136751698 -18878422 + (CA)n Simple_repeat Simple_repeat 1 155 0 4 1628 207 226 8 38 chr4 136751728 136751861 -18878259 + (CATA)n Simple_repeat Simple_repeat 2 130 0 4 1628 1197 68 0 0 chr4 136752057 136752234 -18877886 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 4 1628 227 293 145 8 chr4 136755885 136756002 -18874118 + MIR SINE MIR 35 172 -104 4 1628 322 126 22 22 chr4 136757577 136757666 -18872454 + (TCTG)n Simple_repeat Simple_repeat 2 90 0 4 1628 249 33 0 0 chr4 136757668 136757698 -18872422 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1628 206 77 25 25 chr4 136757792 136757832 -18872288 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1628 333 122 40 0 chr4 136757922 136757996 -18872124 + GA-rich Low_complexity Low_complexity 2 78 0 4 1628 187 278 59 118 chr4 136758988 136759090 -18871030 + MIRb SINE MIR 113 208 -60 4 1628 296 336 65 102 chr4 136759140 136759297 -18870823 - MER63B DNA AcHobo -2 434 281 4 1628 3442 28 8 0 chr4 136759297 136759690 -18870430 - MTA_Mm LTR MaLR 0 396 1 4 1628 296 336 65 102 chr4 136759690 136759777 -18870343 - MER63B DNA AcHobo -156 280 199 4 1628 216 238 66 77 chr4 136761846 136761937 -18868183 - MIR SINE MIR -101 107 18 4 1628 336 257 32 45 chr4 136762062 136762217 -18867903 - HAL1-2a_MD LINE L1 -532 2492 2340 4 1628 558 122 0 0 chr4 136762219 136762317 -18867803 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 4 1628 226 250 29 0 chr4 136762333 136762401 -18867719 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 4 1628 586 274 30 0 chr4 136762415 136762583 -18867537 + B4A SINE B4 56 228 -64 5 1628 686 261 0 0 chr4 136762587 136762729 -18867391 + RSINE1 SINE B4 24 165 0 5 1628 25 65 0 0 chr4 136762747 136762793 -18867327 + AT_rich Low_complexity Low_complexity 1 46 0 5 1628 275 230 11 0 chr4 136762846 136762933 -18867187 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1628 336 343 0 0 chr4 136763671 136763770 -18866350 + (CA)n Simple_repeat Simple_repeat 1 99 0 5 1628 224 403 43 43 chr4 136764506 136764546 -18865574 - L2b LINE L2 -220 3155 3116 5 1628 513 0 0 0 chr4 136764546 136764603 -18865517 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1628 224 403 43 43 chr4 136764603 136764772 -18865348 - L2b LINE L2 -260 3115 2946 5 1628 308 355 19 0 chr4 136764783 136764890 -18865230 + RSINE1 SINE B4 29 137 -28 5 1628 432 0 0 0 chr4 136764895 136764943 -18865177 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1628 266 287 145 17 chr4 136765564 136765681 -18864439 - L1M5 LINE L1 -310 5863 5732 5 1628 517 328 68 44 chr4 136765692 136765941 -18864179 - MLT1F1 LTR MaLR 0 569 315 5 1628 412 105 26 0 chr4 136768490 136768566 -18861554 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1628 960 157 94 8 chr4 136769201 136769400 -18860720 + ORR1A3 LTR MaLR 1 258 -112 5 1628 226 290 160 0 chr4 136769526 136769626 -18860494 - MIRb SINE MIR -65 203 88 5 1628 2805 238 47 41 chr4 136770017 136771406 -18858714 + RMER1B Other Other 163 1341 -1 5 1628 564 207 34 8 chr4 136771512 136771629 -18858491 + ID_B1 SINE B4 97 216 -8 5 1628 818 94 21 7 chr4 136771640 136771759 -18858361 + (GA)n Simple_repeat Simple_repeat 1 119 0 5 1628 1326 78 0 0 chr4 136771759 136771939 -18858181 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1628 818 94 21 7 chr4 136771939 136771959 -18858161 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1628 216 97 0 0 chr4 136771961 136771992 -18858128 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 5 1628 1083 129 0 0 chr4 136771994 136772172 -18857948 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 5 1628 342 152 0 0 chr4 136772172 136772231 -18857889 + (CAGA)n Simple_repeat Simple_repeat 1 59 0 5 1628 251 54 27 0 chr4 136772982 136773019 -18857101 + (TGGGGG)n Simple_repeat Simple_repeat 6 43 0 5 1628 363 242 53 0 chr4 136773771 136773866 -18856254 - PB1D7 SINE Alu 0 120 21 5 1628 1180 68 0 0 chr4 136774002 136774149 -18855971 + B1_Mus2 SINE Alu 1 147 0 5 1628 385 289 137 16 chr4 136774303 136774486 -18855634 - B4A SINE B4 -44 248 44 5 1628 324 70 0 0 chr4 136774513 136774556 -18855564 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1628 1252 47 0 0 chr4 136774560 136774708 -18855412 - B1_Mus1 SINE Alu 0 148 1 5 1628 225 0 0 0 chr4 136774725 136774750 -18855370 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 5 1628 439 233 136 0 chr4 136774752 136774855 -18855265 + PB1D10 SINE Alu 1 117 0 5 1628 639 0 0 0 chr4 136775921 136775992 -18854128 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 1628 216 0 0 0 chr4 136776307 136776331 -18853789 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1628 450 0 0 0 chr4 136776619 136776669 -18853451 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1628 2818 112 58 42 chr4 136776830 136777168 -18852952 - RMER6C LTR ERVK 0 690 346 5 1628 594 0 0 0 chr4 136777168 136777234 -18852886 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1628 2818 112 52 35 chr4 136777234 136777498 -18852622 - RMER6C LTR ERVK -345 345 1 5 1628 390 279 67 0 chr4 136777647 136777751 -18852369 + PB1D9 SINE Alu 3 113 -7 5 1628 285 361 25 0 chr4 136777762 136777881 -18852239 + B4A SINE B4 2 123 -169 5 1628 772 253 31 5 chr4 136778131 136778326 -18851794 - ID_B1 SINE B4 -18 206 7 5 1628 851 150 28 7 chr4 136778496 136778507 -18851613 - B1_Mur4 SINE Alu -3 147 138 5 1628 312 91 0 0 chr4 136778507 136778551 -18851569 + (ATTTG)n Simple_repeat Simple_repeat 5 48 0 5 1628 851 150 28 7 chr4 136778551 136778680 -18851440 - B1_Mur4 SINE Alu -13 137 5 5 1628 279 54 0 0 chr4 136778945 136778982 -18851138 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1628 397 234 9 70 chr4 136779513 136779628 -18850492 + PB1D7 SINE Alu 1 108 -12 5 1628 553 308 75 13 chr4 136780987 136781214 -18848906 + B4A SINE B4 44 284 -8 5 1628 682 294 6 6 chr4 136782408 136782569 -18847551 + RSINE1 SINE B4 1 161 -4 5 1628 600 256 23 0 chr4 136782667 136782800 -18847320 + ID_B1 SINE B4 86 221 -3 5 1628 306 317 50 0 chr4 136782970 136783071 -18847049 + PB1D10 SINE Alu 1 106 -11 5 1628 450 0 0 0 chr4 136783076 136783126 -18846994 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1628 1029 148 5 11 chr4 136784163 136784347 -18845773 + URR1B DNA MER1_type 43 225 0 5 1628 1030 121 0 13 chr4 136786028 136786039 -18844081 - B1_Mur4 SINE Alu 0 150 141 5 1628 189 0 0 0 chr4 136786039 136786060 -18844060 + (TTG)n Simple_repeat Simple_repeat 2 22 0 5 1628 1030 121 0 13 chr4 136786060 136786199 -18843921 - B1_Mur4 SINE Alu -10 140 2 5 1628 310 176 88 0 chr4 136786865 136786880 -18843240 + B1F SINE Alu 63 136 -13 5 1628 361 132 0 0 chr4 136786880 136786933 -18843187 + ID_B1 SINE B4 159 211 -13 5 1628 885 132 0 0 chr4 136786956 136787100 -18843020 + (GGAAA)n Simple_repeat Simple_repeat 3 146 0 5 1628 386 279 19 189 chr4 136788342 136788435 -18841685 - B4A SINE B4 -2 290 149 5 1628 849 112 0 0 chr4 136788435 136788560 -18841560 - B1_Mur4 SINE Alu -1 149 25 5 1628 386 279 19 189 chr4 136788560 136788612 -18841508 - B4A SINE B4 -2 148 67 5 1628 500 281 74 0 chr4 136788636 136788757 -18841363 - B4 SINE B4 -70 222 93 5 1628 1555 218 102 14 chr4 136788759 136789146 -18840974 + MTD LTR MaLR 1 405 -14 5 1628 291 353 29 0 chr4 136789354 136789456 -18840664 - MER58A DNA MER1_type -92 132 28 5 1628 243 0 0 0 chr4 136789495 136789522 -18840598 + (CAG)n Simple_repeat Simple_repeat 3 29 0 5 1628 342 241 13 0 chr4 136789714 136789793 -18840327 + MLT1J2 LTR MaLR 44 123 -325 5 1628 487 301 140 0 chr4 136790469 136790655 -18839465 + MLT1J2 LTR MaLR 30 241 -207 5 1628 206 361 24 40 chr4 136790737 136790861 -18839259 + L2c LINE L2 3266 3387 0 5 1628 492 18 0 0 chr4 136791143 136791200 -18838920 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1628 867 256 125 86 chr4 136791253 136791612 -18838508 - MTEa LTR MaLR -6 373 1 5 1628 195 258 65 33 chr4 136791782 136791874 -18838246 - L3 LINE CR1 -50 4439 4345 5 1628 245 291 12 25 chr4 136792061 136792142 -18837978 - MIR SINE MIR -134 128 49 5 1628 595 301 45 15 chr4 136792207 136792409 -18837711 + ID_B1 SINE B4 4 211 -13 5 1628 696 64 0 0 chr4 136792409 136792503 -18837617 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 5 1628 24 0 0 0 chr4 136792530 136792554 -18837566 + AT_rich Low_complexity Low_complexity 1 24 0 5 1628 752 249 16 52 chr4 136792555 136792733 -18837387 + B3A SINE B2 1 172 -26 5 1628 360 0 0 0 chr4 136792733 136792773 -18837347 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1628 752 249 16 52 chr4 136792773 136792785 -18837335 + B3A SINE B2 173 184 -14 5 1628 566 96 0 0 chr4 136792785 136792868 -18837252 + PB1D9 SINE Alu 38 120 0 5 1628 233 257 235 50 chr4 136792789 136792908 -18837212 + B4 SINE B4 127 267 -25 5 1628 480 362 28 6 chr4 136792953 136793131 -18836989 - MIR SINE MIR -56 206 25 5 1628 711 209 59 108 chr4 136793187 136793391 -18836729 - B3A SINE B2 0 198 5 5 1628 254 201 37 0 chr4 136793670 136793739 -18836381 - PB1D10 SINE Alu -4 116 43 5 1628 543 257 58 70 chr4 136793745 136794004 -18836116 + L1MC3 LINE L1 4832 5087 -1059 5 1628 1236 41 0 0 chr4 136794035 136794180 -18835940 - B1_Mus1 SINE Alu -2 146 2 5 1628 568 296 8 0 chr4 136794260 136794392 -18835728 + ID_B1 SINE B4 82 214 -10 5 1628 486 0 0 0 chr4 136794392 136794446 -18835674 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1628 30 59 0 0 chr4 136794453 136794504 -18835616 + AT_rich Low_complexity Low_complexity 1 51 0 5 1628 536 235 0 17 chr4 136794549 136794666 -18835454 + PB1D7 SINE Alu 5 119 -1 5 1628 191 167 24 0 chr4 136794668 136794710 -18835410 + GA-rich Low_complexity Low_complexity 1 43 0 5 1628 490 336 168 15 chr4 136794713 136795187 -18834933 + L1MC3 LINE L1 5337 5885 -1900 5 1628 293 327 75 19 chr4 136795187 136795293 -18834827 - MTEb LTR MaLR -242 117 6 5 1628 2039 280 131 7 chr4 136795272 136795969 -18834151 - MTEb-int LTR MaLR -27 1553 771 5 1628 1377 275 47 22 chr4 136796002 136796407 -18833713 - MTEb-int LTR MaLR -1043 537 123 5 1628 431 222 102 0 chr4 136796409 136796517 -18833603 - MTEb LTR MaLR 0 379 261 5 1628 1674 203 109 72 chr4 136796520 136796565 -18833555 - MTD LTR MaLR 0 419 393 5 1628 1363 96 11 0 chr4 136796565 136796752 -18833368 + B2_Mm1t SINE B2 1 189 -4 5 1628 1674 203 109 72 chr4 136796752 136797110 -18833010 - MTD LTR MaLR -27 392 1 5 1628 556 276 43 22 chr4 136797121 136797306 -18832814 - MTEb LTR MaLR -188 191 3 5 1628 300 320 85 8 chr4 136797306 136797416 -18832704 - MTEb-int LTR MaLR -1449 131 12 5 1628 389 282 8 61 chr4 136797431 136797563 -18832557 - MTEb LTR MaLR 0 379 255 5 1628 400 227 11 11 chr4 136797571 136797660 -18832460 + PB1D7 SINE Alu 30 118 -2 5 1628 390 299 34 27 chr4 136797661 136797809 -18832311 + MIR SINE MIR 3 151 -125 5 1628 925 25 144 0 chr4 136797865 136797983 -18832137 - B1_Mm SINE Alu -12 135 1 5 1628 22 56 0 0 chr4 136798151 136798187 -18831933 + AT_rich Low_complexity Low_complexity 1 36 0 5 1628 25 65 0 0 chr4 136798401 136798447 -18831673 + AT_rich Low_complexity Low_complexity 1 46 0 5 1628 443 63 0 16 chr4 136798582 136798646 -18831474 + (GGGAGA)n Simple_repeat Simple_repeat 5 67 0 5 1628 257 243 84 5 chr4 136801425 136801525 -18828595 + MIRb SINE MIR 2 103 -159 5 1628 347 157 0 14 chr4 136801648 136801719 -18828401 + CT-rich Low_complexity Low_complexity 4 73 0 5 1628 522 0 0 0 chr4 136802275 136802333 -18827787 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1628 494 143 55 0 chr4 136803042 136803133 -18826987 - ORR1D1 LTR MaLR 0 374 279 5 1628 508 227 220 0 chr4 136803157 136803289 -18826831 - ORR1D1-int LTR MaLR -274 1096 936 5 1628 206 196 59 0 chr4 136803501 136803552 -18826568 + (TTGGGG)n Simple_repeat Simple_repeat 4 57 0 5 1628 342 54 0 75 chr4 136803604 136803684 -18826436 + (GGTTG)n Simple_repeat Simple_repeat 5 78 0 5 1628 198 232 90 38 chr4 136804845 136804950 -18825170 + MIR3 SINE MIR 109 214 -48 5 1628 378 241 27 36 chr4 136805808 136805920 -18824200 - PB1 SINE Alu -4 123 13 6 1628 341 314 25 0 chr4 136808091 136808212 -18821908 + L2c LINE L2 3085 3208 -179 6 1628 259 250 38 50 chr4 136808502 136808582 -18821538 - MLT1K LTR MaLR -343 252 174 6 1628 339 164 0 43 chr4 136808604 136808674 -18821446 + HAL1-3A_ME LINE L1 1961 2027 -831 6 1628 247 288 0 0 chr4 136808678 136808737 -18821383 + (CACG)n Simple_repeat Simple_repeat 3 61 0 6 1628 2224 140 42 22 chr4 136808769 136809170 -18820950 + MTC LTR MaLR 5 413 -8 6 1628 657 0 0 0 chr4 136809322 136809395 -18820725 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1628 225 0 0 0 chr4 136810044 136810069 -18820051 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1628 379 330 124 57 chr4 136810287 136810705 -18819415 - MLT1L LTR MaLR 0 610 165 6 1628 982 251 125 49 chr4 136810935 136811279 -18818841 - MTEa LTR MaLR -3 376 7 6 1628 306 0 0 0 chr4 136811345 136811379 -18818741 + (TTA)n Simple_repeat Simple_repeat 1 34 0 6 1628 244 342 0 44 chr4 136812134 136812247 -18817873 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 1628 520 252 145 14 chr4 136812705 136812850 -18817270 + RSINE1 SINE B4 2 165 0 6 1628 237 132 0 0 chr4 136812854 136812892 -18817228 + (CCA)n Simple_repeat Simple_repeat 1 38 0 6 1628 261 57 0 0 chr4 136813059 136813094 -18817026 + (CTGTG)n Simple_repeat Simple_repeat 3 37 0 6 1628 243 0 0 0 chr4 136813865 136813892 -18816228 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1628 666 149 24 27 chr4 136814226 136814481 -18815639 + CT-rich Low_complexity Low_complexity 1 254 0 6 1628 2095 74 20 16 chr4 136814548 136814599 -18815521 - ORR1A2 LTR MaLR 0 327 278 6 1628 4889 45 7 3 chr4 136814599 136815186 -18814934 - L1Md_F2 LINE L1 -3 6579 5991 6 1628 2095 74 20 16 chr4 136815186 136815438 -18814682 - ORR1A2 LTR MaLR -50 277 23 6 1628 468 0 0 0 chr4 136815438 136815490 -18814630 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1628 1150 178 35 0 chr4 136815682 136815884 -18814236 - B3 SINE B2 -6 210 2 6 1628 203 236 0 0 chr4 136816114 136816169 -18813951 + (GCGTG)n Simple_repeat Simple_repeat 4 58 0 6 1628 516 152 33 0 chr4 136816339 136816431 -18813689 + B4 SINE B4 2 96 -196 6 1628 780 248 53 29 chr4 136816435 136816643 -18813477 + ID_B1 SINE B4 7 219 -5 6 1628 744 12 0 0 chr4 136816643 136816728 -18813392 + (GAGTG)n Simple_repeat Simple_repeat 3 87 0 6 1628 203 103 0 25 chr4 136816730 136816770 -18813350 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 6 1628 422 218 88 10 chr4 136816771 136816873 -18813247 + B4 SINE B4 97 206 -86 6 1628 543 16 0 0 chr4 136816879 136816943 -18813177 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1628 807 164 5 0 chr4 136816960 136817350 -18812770 + (CA)n Simple_repeat Simple_repeat 1 392 0 6 1628 330 301 35 26 chr4 136817909 136818025 -18812095 + MIRb SINE MIR 22 138 -130 6 1628 194 321 0 0 chr4 136819705 136819758 -18810362 + MER5A DNA MER1_type 137 189 0 6 1628 182 300 0 0 chr4 136819877 136819927 -18810193 - L2c LINE L2 -228 3159 3110 6 1628 503 283 140 128 chr4 136820431 136820629 -18809491 - MTE2a LTR MaLR 0 379 174 6 1628 459 0 0 0 chr4 136820629 136820680 -18809440 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1628 1215 36 0 0 chr4 136820680 136820818 -18809302 - B1_Mus2 SINE Alu -9 138 1 6 1628 503 283 140 128 chr4 136820818 136820954 -18809166 - MTE2a LTR MaLR -206 173 41 6 1628 342 80 0 0 chr4 136822121 136822171 -18807949 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1628 205 198 163 20 chr4 136822360 136822458 -18807662 + L2b LINE L2 3047 3158 -217 6 1628 667 206 0 8 chr4 136822890 136823017 -18807103 + RSINE1 SINE B4 4 129 -36 6 1628 687 120 0 0 chr4 136823019 136823136 -18806984 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1628 316 265 304 11 chr4 136823594 136823781 -18806339 + B4 SINE B4 2 242 -50 6 1628 790 218 165 0 chr4 136824909 136825097 -18805023 + ID_B1 SINE B4 2 220 -4 6 1628 262 359 68 34 chr4 136825566 136825713 -18804407 - MER63A DNA AcHobo -58 152 1 6 1628 354 191 66 129 chr4 136825854 136826019 -18804101 + B3A SINE B2 16 187 -29 6 1628 200 97 32 0 chr4 136826025 136826056 -18804064 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 6 1628 402 285 6 77 chr4 136826086 136826127 -18803993 + ID_B1 SINE B4 77 219 -3 6 1628 589 221 0 0 chr4 136826127 136826240 -18803880 + B1F SINE Alu 32 144 -5 6 1628 233 256 22 36 chr4 136826233 136826371 -18803749 + ORR1B1-int LTR MaLR 619 754 -755 6 1628 1036 66 0 0 chr4 136826272 136826409 -18803711 + B1_Mus2 SINE Alu 9 145 -2 6 1628 225 274 95 14 chr4 136827003 136827077 -18803043 + BC1_Mm scRNA scRNA 5 84 -68 6 1628 815 280 65 29 chr4 136827991 136828232 -18801888 + B4A SINE B4 12 262 -30 6 1628 900 49 0 40 chr4 136828232 136828381 -18801739 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 1628 21 0 0 0 chr4 136828445 136828466 -18801654 + AT_rich Low_complexity Low_complexity 1 21 0 6 1628 603 263 29 78 chr4 136828635 136828841 -18801279 + B3A SINE B2 3 198 0 6 1628 1010 128 7 0 chr4 136828938 136829086 -18801034 + B1_Mur4 SINE Alu 2 150 0 6 1628 198 0 0 0 chr4 136829086 136829108 -18801012 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1628 378 0 0 0 chr4 136829557 136829599 -18800521 + (CTGGGG)n Simple_repeat Simple_repeat 4 45 0 6 1628 279 304 0 0 chr4 136829600 136829669 -18800451 + ID4 SINE ID 15 83 0 6 1628 1016 290 26 7 chr4 136829723 136829782 -18800338 + B4 SINE B4 17 76 -216 6 1628 522 46 0 0 chr4 136829782 136829847 -18800273 + (GTTTG)n Simple_repeat Simple_repeat 3 67 0 6 1628 1016 290 26 7 chr4 136829847 136830058 -18800062 + B4 SINE B4 77 291 -1 6 1628 204 346 0 0 chr4 136830058 136830110 -18800010 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1628 405 178 41 0 chr4 136830128 136830201 -18799919 + ID4 SINE ID 1 76 -7 6 1628 620 222 22 0 chr4 136830821 136830956 -18799164 + RSINE1 SINE B4 4 141 -24 6 1628 447 68 0 0 chr4 136830956 136831015 -18799105 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1628 481 358 20 45 chr4 136831030 136831232 -18798888 + B3A SINE B2 2 198 0 6 1628 1220 354 50 67 chr4 136831423 136832110 -18798010 + MER115 DNA Tip100 3 677 -16 6 1628 196 262 48 16 chr4 136832494 136832556 -18797564 - L2b LINE L2 0 3375 3312 6 1628 33 25 0 0 chr4 136833025 136833065 -18797055 + GC_rich Low_complexity Low_complexity 1 40 0 6 1628 201 286 0 21 chr4 136833305 136833398 -18796722 + C-rich Low_complexity Low_complexity 6 96 0 6 1628 207 105 26 0 chr4 136833343 136833381 -18796739 + (CCCG)n Simple_repeat Simple_repeat 3 41 0 6 1628 36 40 0 0 chr4 136833485 136833535 -18796585 + GC_rich Low_complexity Low_complexity 1 50 0 6 1628 25 51 0 0 chr4 136833677 136833716 -18796404 + GC_rich Low_complexity Low_complexity 1 39 0 6 1628 210 71 0 0 chr4 136834049 136834077 -18796043 + (CGCTG)n Simple_repeat Simple_repeat 4 31 0 6 1628 216 0 0 0 chr4 136835114 136835138 -18794982 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1628 231 211 20 18 chr4 136835225 136835286 -18794834 - MIR SINE MIR -117 159 92 6 1628 344 239 139 0 chr4 136835955 136836062 -18794058 - MIRb SINE MIR -110 166 47 6 1628 699 145 48 0 chr4 136836155 136836279 -18793841 + RSINE1 SINE B4 34 163 -2 6 1628 21 0 0 0 chr4 136836279 136836300 -18793820 + AT_rich Low_complexity Low_complexity 1 21 0 6 1628 795 169 42 0 chr4 136836301 136836443 -18793677 + B1_Mur4 SINE Alu 2 149 -1 6 1628 687 12 0 0 chr4 136836446 136836526 -18793594 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 6 1628 180 328 89 82 chr4 136836986 136837132 -18792988 + MIRm SINE MIR 37 183 -93 6 1629 412 239 23 0 chr4 136840071 136840159 -18789961 + ID_B1 SINE B4 127 216 -8 6 1629 238 286 95 0 chr4 136840168 136840231 -18789889 + ID SINE ID 1 69 -155 6 1629 274 271 10 15 chr4 136840182 136840284 -18789836 + ID4_ SINE ID 20 120 -32 6 1629 1188 42 0 0 chr4 136841175 136841318 -18788802 + B1_Mus2 SINE Alu 2 144 -3 6 1629 207 0 0 0 chr4 136841318 136841341 -18788779 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1629 288 263 132 47 chr4 136841506 136841659 -18788461 - MIR3 SINE MIR -87 175 13 6 1629 243 172 33 33 chr4 136842854 136842914 -18787206 - L2b LINE L2 -14 3361 3302 6 1629 383 276 20 0 chr4 136844172 136844270 -18785850 + B4A SINE B4 1 100 -192 6 1629 217 235 118 0 chr4 136845538 136845623 -18784497 - MIRb SINE MIR -120 148 54 6 1629 306 318 140 34 chr4 136845792 136845971 -18784149 - MIR SINE MIR -21 241 44 6 1629 1366 124 32 9 chr4 136846647 136846867 -18783253 - URR1A DNA MER1_type -1 225 1 6 1629 476 215 15 76 chr4 136847060 136847191 -18782929 - B1F SINE Alu -5 144 22 6 1629 366 100 0 0 chr4 136847825 136847885 -18782235 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1629 249 304 66 9 chr4 136848492 136848635 -18781485 + MIR SINE MIR 40 184 -78 6 1629 298 309 27 0 chr4 136849414 136849524 -18780596 + MIRc SINE MIR 17 129 -139 6 1629 229 250 0 0 chr4 136851102 136851154 -18778966 + MIR SINE MIR 132 183 -79 6 1629 204 167 0 40 chr4 136852170 136852220 -18777900 + C-rich Low_complexity Low_complexity 1 48 0 6 1629 879 37 0 0 chr4 136852835 136852942 -18777178 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 6 1629 1205 48 0 0 chr4 136853390 136853537 -18776583 + B1_Mm SINE Alu 1 147 0 6 1629 198 0 0 0 chr4 136853537 136853559 -18776561 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1629 1173 54 0 0 chr4 136855502 136855650 -18774470 + B1_Mus1 SINE Alu 1 148 0 6 1629 246 125 0 0 chr4 136855941 136855989 -18774131 + (G)n Simple_repeat Simple_repeat 1 48 0 6 1629 195 184 0 0 chr4 136856181 136856219 -18773901 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1629 1198 41 0 0 chr4 136856922 136857069 -18773051 + B1_Mm SINE Alu 1 147 0 7 1629 1267 90 16 5 chr4 136859243 136859432 -18770688 + URR1B DNA MER1_type 35 225 0 7 1629 210 369 53 26 chr4 136860293 136860407 -18769713 + MIRc SINE MIR 19 135 -133 7 1629 1137 43 0 0 chr4 136860728 136860869 -18769251 + B1_Mus1 SINE Alu 2 142 -6 7 1629 216 0 0 0 chr4 136860925 136860949 -18769171 + (CTG)n Simple_repeat Simple_repeat 2 25 0 7 1629 1115 117 70 20 chr4 136861403 136861603 -18768517 - URR1A DNA MER1_type -16 210 1 7 1629 978 68 68 0 chr4 136862811 136862943 -18767177 - B1_Mus1 SINE Alu -5 143 3 7 1629 566 154 61 81 chr4 136864688 136864836 -18765284 - URR1A DNA MER1_type 0 226 82 7 1629 295 131 48 16 chr4 136865287 136865349 -18764771 + L1MB8 LINE L1 5856 5919 -259 7 1629 337 278 69 40 chr4 136865949 136866050 -18764070 + ID_B1 SINE B4 2 105 -119 7 1629 493 212 14 0 chr4 136866115 136866228 -18763892 + B1_Mur2 SINE Alu 2 118 -31 7 1629 292 262 12 0 chr4 136867518 136867598 -18762522 - ID4 SINE ID -1 82 2 7 1629 621 143 64 50 chr4 136867612 136867752 -18762368 - URR1B DNA MER1_type 0 225 84 7 1629 362 243 247 6 chr4 136867613 136867783 -18762337 + CYRA11_Mm Unknown Y-chromosome 172 382 -235 7 1629 331 329 64 45 chr4 136868920 136869140 -18760980 + ID_B1 SINE B4 1 224 0 7 1629 216 97 0 0 chr4 136869494 136869525 -18760595 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1629 652 150 134 0 chr4 136869965 136870092 -18760028 + B1_Mus1 SINE Alu 3 146 -2 7 1629 653 198 155 6 chr4 136872049 136872217 -18757903 + B3 SINE B2 16 208 -8 7 1629 781 196 7 7 chr4 136872222 136872366 -18757754 + B1_Mur1 SINE Alu 1 144 -5 7 1629 341 193 235 0 chr4 136872839 136872958 -18757162 - B1_Mus2 SINE Alu 0 147 1 7 1629 258 277 0 15 chr4 136873785 136873851 -18756269 - ID SINE ID -154 70 6 7 1629 252 167 0 0 chr4 136873868 136873916 -18756204 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1629 1480 32 0 21 chr4 136873961 136874150 -18755970 + B2_Mm1a SINE B2 3 187 -6 7 1629 804 194 7 0 chr4 136874396 136874535 -18755585 + B1_Mur1 SINE Alu 3 142 -7 7 1629 427 290 117 0 chr4 136874793 136874938 -18755182 + RSINE1 SINE B4 2 163 -2 7 1629 195 42 0 0 chr4 136876594 136876618 -18753502 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1629 301 241 92 0 chr4 136879854 136879941 -18750179 + PB1D7 SINE Alu 26 120 0 7 1629 194 125 107 40 chr4 136879941 136880016 -18750104 + GA-rich Low_complexity Low_complexity 1 80 0 7 1629 25 0 0 0 chr4 136880029 136880054 -18750066 + AT_rich Low_complexity Low_complexity 1 25 0 7 1629 21 36 0 0 chr4 136880824 136880852 -18749268 + AT_rich Low_complexity Low_complexity 1 28 0 7 1629 1170 251 56 8 chr4 136880959 136881317 -18748803 + MTE2b LTR MaLR 5 379 0 7 1629 496 27 387 0 chr4 136881451 136881526 -18748594 + U6 snRNA snRNA 1 104 -3 7 1629 545 187 47 102 chr4 136882701 136882855 -18747265 + RLTR19-int LTR ERVK 1910 2044 -3478 7 1629 1110 51 0 0 chr4 136882855 136882993 -18747127 + B1_Mus1 SINE Alu 1 138 -10 7 1629 246 32 0 0 chr4 136882993 136883024 -18747096 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1629 545 183 50 104 chr4 136883024 136883102 -18747018 + RLTR19-int LTR ERVK 2045 2116 -3406 7 1629 1375 73 5 10 chr4 136883102 136883296 -18746824 + B2_Mm1a SINE B2 1 193 0 7 1629 2753 187 31 52 chr4 136883303 136883918 -18746202 + RLTR19-int LTR ERVK 2330 2931 -3206 7 1629 364 318 15 8 chr4 136883957 136884087 -18746033 + RLTR19-int LTR ERVK 4238 4368 -1769 7 1629 201 74 0 0 chr4 136884242 136884269 -18745851 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 7 1629 495 282 14 40 chr4 136885108 136885195 -18744925 + ID SINE ID 1 83 -141 7 1629 268 276 0 26 chr4 136885195 136885273 -18744847 + B1F1 SINE Alu 4 79 -70 7 1629 447 312 50 25 chr4 136885305 136885466 -18744654 + RSINE1 SINE B4 1 165 0 7 1629 308 338 58 43 chr4 136885488 136885503 -18744617 + ID_B1 SINE B4 80 218 -4 7 1629 478 256 66 8 chr4 136885503 136885625 -18744495 + B1_Mur1 SINE Alu 15 143 -6 7 1629 225 254 131 0 chr4 136886085 136886215 -18743905 + L1M4 LINE L1 4398 4544 -1602 7 1629 351 0 0 0 chr4 136886221 136886260 -18743860 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 7 1629 402 277 102 10 chr4 136886432 136886629 -18743491 + L1M4 LINE L1 5514 5728 -443 7 1629 344 312 126 57 chr4 136886637 136886899 -18743221 + L1ME2 LINE L1 5697 5976 -188 7 1629 447 255 20 0 chr4 136887023 136887121 -18742999 + PB1D10 SINE Alu 17 116 -1 7 1629 288 0 0 0 chr4 136887121 136887153 -18742967 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1629 551 155 137 8 chr4 136887186 136887303 -18742817 + B1_Mur2 SINE Alu 2 133 -16 7 1629 224 0 65 0 chr4 136887315 136887346 -18742774 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1629 494 262 134 16 chr4 136887615 136887801 -18742319 - ID_B1 SINE B4 -16 208 1 7 1629 212 86 0 28 chr4 136888019 136888055 -18742065 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 7 1629 532 138 160 25 chr4 136888056 136888175 -18741945 - B1_Mur1 SINE Alu -5 144 10 7 1629 509 288 14 14 chr4 136888829 136888970 -18741150 + ID_B1 SINE B4 81 221 -3 7 1629 1219 48 0 0 chr4 136889044 136889190 -18740930 + B1_Mm SINE Alu 2 147 0 7 1629 846 186 89 17 chr4 136889261 136889441 -18740679 + B3A SINE B2 3 195 -3 7 1629 304 310 79 2 chr4 136889478 136889590 -18740530 + PB1 SINE Alu 2 124 -3 7 1629 1427 84 16 5 chr4 136889598 136889789 -18740331 + B2_Mm2 SINE B2 3 195 0 7 1629 1344 111 11 0 chr4 136890188 136890378 -18739742 - B2_Mm1t SINE B2 -1 192 1 7 1629 987 186 108 5 chr4 136891339 136891534 -18738586 - B3 SINE B2 -1 215 1 7 1629 316 317 68 45 chr4 136891616 136891748 -18738372 + RSINE1 SINE B4 31 165 0 7 1629 21 0 0 0 chr4 136891770 136891791 -18738329 + AT_rich Low_complexity Low_complexity 1 21 0 7 1629 486 108 62 31 chr4 136892290 136892386 -18737734 - B1_Mus2 SINE Alu 0 147 49 7 1629 370 277 136 74 chr4 136892757 136893014 -18737106 + B4 SINE B4 2 274 -18 7 1629 236 239 75 0 chr4 136893218 136893285 -18736835 - B3 SINE B2 -17 199 128 7 1629 265 140 0 74 chr4 136893695 136893749 -18736371 + ID_B1 SINE B4 107 156 -68 7 1629 711 99 91 8 chr4 136894004 136894136 -18735984 + URR1B DNA MER1_type 83 225 0 7 1629 293 339 58 0 chr4 136894162 136894283 -18735837 - MIR SINE MIR -120 142 15 7 1629 488 92 341 11 chr4 136894720 136894808 -18735312 - PB1D9 SINE Alu -2 118 2 7 1629 640 106 29 0 chr4 136894974 136895078 -18735042 - B1_Mur3 SINE Alu -1 148 42 7 1629 588 184 24 8 chr4 136895303 136895429 -18734691 + B1_Mus2 SINE Alu 15 142 -5 7 1629 323 284 0 10 chr4 136895435 136895531 -18734589 - B3A SINE B2 -102 96 2 7 1629 814 154 240 12 chr4 136895616 136895787 -18734333 + B3 SINE B2 1 210 -6 7 1629 186 71 0 0 chr4 136895794 136895822 -18734298 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 7 1629 1408 64 21 0 chr4 136895822 136896010 -18734110 + B2_Mm2 SINE B2 3 194 -1 7 1629 1256 40 0 0 chr4 136896012 136896160 -18733960 + B1_Mus1 SINE Alu 1 148 0 7 1629 222 125 25 0 chr4 136896161 136896201 -18733919 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 7 1629 554 237 7 51 chr4 136896207 136896345 -18733775 - B4 SINE B4 -80 212 81 7 1629 680 152 24 16 chr4 136896380 136896507 -18733613 - B1_Mur4 SINE Alu -22 128 1 7 1629 606 254 77 26 chr4 136896507 136896586 -18733534 - B4 SINE B4 -203 89 1 7 1629 779 245 127 16 chr4 136896595 136896848 -18733272 + B4A SINE B4 6 286 -6 7 1629 294 299 78 0 chr4 136897298 136897385 -18732735 + B1F SINE Alu 3 95 -54 7 1629 461 296 59 27 chr4 136897687 136897857 -18732263 + ID_B1 SINE B4 77 248 -44 7 1629 211 261 27 80 chr4 136897852 136897927 -18732193 + ID4_ SINE ID 11 81 -2 7 1629 3268 150 96 25 chr4 136898192 136898547 -18731573 + MERVL_2A-int LTR ERVL 3718 4115 -1646 7 1629 1385 82 16 16 chr4 136898547 136898734 -18731386 + B2_Mm2 SINE B2 2 188 -7 7 1629 3268 150 96 25 chr4 136898734 136898985 -18731135 + MERVL_2A-int LTR ERVL 4116 4367 -1394 7 1629 1402 159 0 70 chr4 136898985 136899283 -18730837 - MTC-int LTR MaLR -899 359 83 7 1629 4182 172 124 21 chr4 136899283 136900122 -18729998 - MERVL_2A-int LTR ERVL -4836 925 1 7 1629 183 156 0 0 chr4 136900147 136900179 -18729941 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 7 1629 688 229 345 0 chr4 136900203 136900470 -18729650 - MT2A LTR ERVL -71 462 104 7 1629 1284 89 0 0 chr4 136900489 136900669 -18729451 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1629 1249 84 33 27 chr4 136900676 136900860 -18729260 + B2_Mm2 SINE B2 1 185 -10 7 1629 276 91 91 0 chr4 136900869 136900913 -18729207 + B2_Mm2 SINE B2 2 49 -146 7 1629 180 97 0 0 chr4 136901172 136901203 -18728917 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1629 623 242 0 0 chr4 136901535 136901655 -18728465 - B3 SINE B2 -96 120 1 7 1629 1316 159 144 39 chr4 136901756 136902090 -18728030 + ORR1D2 LTR MaLR 2 370 0 7 1629 425 286 41 0 chr4 136902188 136902286 -18727834 + RSINE1 SINE B4 1 102 -63 7 1629 902 94 55 41 chr4 136902589 136902734 -18727386 + B1_Mus1 SINE Alu 1 147 -1 7 1629 341 302 33 16 chr4 136902942 136903063 -18727057 + B1F SINE Alu 4 126 -23 7 1629 221 208 52 65 chr4 136903039 136903116 -18727004 + B1_Mm SINE Alu 72 147 0 7 1629 572 170 0 0 chr4 136903125 136903219 -18726901 + B3 SINE B2 23 116 -100 7 1629 453 294 110 0 chr4 136903216 136903352 -18726768 + ID_B1 SINE B4 23 173 -51 8 1629 388 241 0 15 chr4 136903399 136903493 -18726627 + B1_Mur1 SINE Alu 38 128 -21 8 1629 419 186 0 0 chr4 136903484 136903554 -18726566 + B1_Mur4 SINE Alu 35 104 -46 8 1629 980 246 134 39 chr4 136903563 136903974 -18726146 + RMER4A LTR ERVK 17 466 0 8 1629 210 71 0 0 chr4 136904051 136904079 -18726041 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 8 1629 543 69 0 0 chr4 136904082 136904154 -18725966 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 8 1629 530 179 35 35 chr4 136904316 136904432 -18725688 - B3 SINE B2 -1 215 100 8 1629 651 296 34 10 chr4 136904715 136904923 -18725197 + ID_B1 SINE B4 2 214 -10 8 1629 186 133 0 0 chr4 136904931 136904961 -18725159 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 8 1629 234 204 41 0 chr4 136904961 136905010 -18725110 + RSINE1 SINE B4 2 52 -113 8 1629 1361 80 5 65 chr4 136905776 136905797 -18724323 - B2_Mm2 SINE B2 -6 189 171 8 1629 1208 61 0 0 chr4 136905797 136905944 -18724176 + B1_Mus1 SINE Alu 2 148 0 8 1629 1361 80 5 65 chr4 136905944 136906123 -18723997 - B2_Mm2 SINE B2 -25 170 1 8 1629 976 170 95 30 chr4 136906471 136906671 -18723449 - B3 SINE B2 0 216 4 8 1629 314 278 34 92 chr4 136906791 136906910 -18723210 - B3 SINE B2 -104 112 1 8 1629 1070 96 7 0 chr4 136907143 136907289 -18722831 + B1_Mus2 SINE Alu 1 147 0 8 1629 400 294 40 40 chr4 136907568 136907720 -18722400 + RSINE1 SINE B4 4 155 -10 8 1629 668 159 83 0 chr4 136907738 136907870 -18722250 - B1_Mur2 SINE Alu -2 147 5 8 1629 29 38 0 19 chr4 136907875 136907905 -18722215 + AT_rich Low_complexity Low_complexity 1 30 0 8 1629 885 176 40 40 chr4 136907905 136908082 -18722038 - B2_Mm2 SINE B2 -18 177 1 8 1629 29 38 0 19 chr4 136908082 136908105 -18722015 + AT_rich Low_complexity Low_complexity 1 23 0 8 1629 830 269 42 9 chr4 136908113 136908327 -18721793 + ID_B1 SINE B4 4 224 0 8 1629 326 307 49 35 chr4 136908353 136908495 -18721625 + RSINE1 SINE B4 14 157 -8 8 1629 180 111 0 0 chr4 136908510 136908537 -18721583 + (CATA)n Simple_repeat Simple_repeat 4 30 0 8 1629 308 171 42 14 chr4 136908543 136908614 -18721506 + RMER30 DNA MER1_type 100 172 -30 8 1629 189 300 84 14 chr4 136908847 136908918 -18721202 - MIR SINE MIR -50 212 137 8 1629 483 196 56 63 chr4 136908926 136909068 -18721052 - ID_B1 SINE B4 -3 221 81 8 1629 446 240 87 16 chr4 136909070 136909197 -18720923 - MIR SINE MIR -114 148 13 8 1629 681 258 66 20 chr4 136909399 136909597 -18720523 + B3 SINE B2 4 210 -6 8 1629 270 296 18 36 chr4 136909618 136909730 -18720390 + PB1D10 SINE Alu 1 110 -7 8 1629 555 220 46 30 chr4 136909741 136909872 -18720248 - ID_B1 SINE B4 0 224 92 8 1629 357 293 20 48 chr4 136910494 136910641 -18719479 - L2a LINE L2 -4 3422 3280 8 1629 21 0 0 0 chr4 136911400 136911421 -18718699 + AT_rich Low_complexity Low_complexity 1 21 0 8 1629 360 221 115 0 chr4 136911484 136911588 -18718532 - PB1D9 SINE Alu 0 120 5 8 1629 422 241 35 18 chr4 136911593 136911707 -18718413 - RSINE1 SINE B4 -47 118 3 8 1629 452 266 0 0 chr4 136912130 136912239 -18717881 + PB1D9 SINE Alu 12 120 0 8 1629 24 32 0 0 chr4 136913001 136913032 -18717088 + GC_rich Low_complexity Low_complexity 1 31 0 8 1629 24 53 0 0 chr4 136913158 136913196 -18716924 + GC_rich Low_complexity Low_complexity 1 38 0 8 1629 243 0 0 0 chr4 136913237 136913264 -18716856 + (CCG)n Simple_repeat Simple_repeat 3 29 0 8 1629 21 0 0 0 chr4 136913302 136913323 -18716797 + GC_rich Low_complexity Low_complexity 1 21 0 8 1629 630 218 21 7 chr4 136913915 136914058 -18716062 - B1_Mur2 SINE Alu -1 148 4 8 1629 720 160 33 40 chr4 136914086 136914236 -18715884 - B1_Mur3 SINE Alu 0 149 1 8 1629 207 0 0 0 chr4 136914242 136914265 -18715855 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1629 406 265 52 29 chr4 136914272 136914408 -18715712 - ID_B1 SINE B4 -10 214 76 8 1629 644 275 48 14 chr4 136914730 136914940 -18715180 + ID_B1 SINE B4 2 218 -6 8 1629 439 272 26 0 chr4 136914970 136915084 -18715036 - B4A SINE B4 -173 119 3 8 1629 235 291 25 0 chr4 136915226 136915305 -18714815 - ID4 SINE ID -2 81 1 8 1629 183 42 0 0 chr4 136915340 136915364 -18714756 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1629 2556 154 27 5 chr4 136915774 136916186 -18713934 - MTC LTR MaLR 0 421 1 8 1629 823 121 301 0 chr4 136916302 136916468 -18713652 - B3 SINE B2 0 216 1 8 1629 964 170 36 64 chr4 136917488 136917708 -18712412 + B3 SINE B2 3 216 0 8 1629 507 255 31 38 chr4 136917738 136917897 -18712223 + RSINE1 SINE B4 3 160 -5 8 1629 257 213 0 0 chr4 136917927 136917974 -18712146 + ID_B1 SINE B4 175 221 -3 8 1629 351 0 0 0 chr4 136918047 136918086 -18712034 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1629 1498 51 0 6 chr4 136918499 136918678 -18711442 + B2_Mm2 SINE B2 2 179 -16 8 1629 293 234 91 0 chr4 136918914 136918991 -18711129 + B1F2 SINE Alu 1 84 -65 8 1629 801 177 14 0 chr4 136919019 136919166 -18710954 + B1_Mur4 SINE Alu 2 150 0 8 1629 446 147 27 0 chr4 136919200 136919275 -18710845 + Lx9 LINE L1 6959 7035 -609 8 1629 1733 16 0 0 chr4 136919275 136919464 -18710656 + B2_Mm1a SINE B2 2 190 -3 8 1629 1246 34 0 0 chr4 136919469 136919615 -18710505 + B1_Mus2 SINE Alu 2 147 0 8 1629 216 191 0 0 chr4 136919615 136919662 -18710458 + A-rich Low_complexity Low_complexity 1 47 0 8 1629 1102 214 139 20 chr4 136919662 136920215 -18709905 + Lx9 LINE L1 7022 7640 -4 8 1629 1086 95 0 13 chr4 136920216 136920355 -18709765 + B1_Mus1 SINE Alu 1 139 -9 8 1629 194 0 39 0 chr4 136920355 136920381 -18709739 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1629 227 264 122 33 chr4 136920391 136920481 -18709639 + PB1 SINE Alu 4 101 -26 8 1629 423 218 76 68 chr4 136920413 136920531 -18709589 + ID_B1 SINE B4 104 222 -2 8 1629 882 125 0 0 chr4 136920556 136920684 -18709436 + B1_Mus1 SINE Alu 12 139 -9 8 1629 614 281 37 18 chr4 136920693 136920856 -18709264 + ID_B1 SINE B4 8 173 -51 8 1629 1226 41 0 13 chr4 136921531 136921680 -18708440 - B1_Mus1 SINE Alu 0 148 2 8 1629 424 210 219 32 chr4 136921896 136922083 -18708037 + L1MA4A LINE L1 5680 5901 -402 8 1629 536 283 7 0 chr4 136922244 136922382 -18707738 + RSINE1 SINE B4 3 141 -24 8 1629 462 186 147 0 chr4 136922434 136922536 -18707584 - ID_B1 SINE B4 -4 220 104 8 1629 304 234 20 78 chr4 136922663 136922765 -18707355 + MT2B LTR ERVL 169 264 -337 8 1629 764 103 0 0 chr4 136922680 136922787 -18707333 + B1_Mur2 SINE Alu 30 136 -13 8 1629 261 0 0 0 chr4 136922788 136922817 -18707303 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 8 1629 840 214 62 15 chr4 136922858 136923053 -18707067 + B3 SINE B2 9 212 -4 8 1629 612 212 8 8 chr4 136923091 136923210 -18706910 + B1_Mur1 SINE Alu 8 126 -23 8 1629 234 103 86 0 chr4 136923247 136923305 -18706815 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 8 1629 688 231 0 13 chr4 136923591 136923740 -18706380 + B1F SINE Alu 1 147 -2 8 1629 216 97 0 0 chr4 136923961 136923992 -18706128 + (TCC)n Simple_repeat Simple_repeat 2 32 0 8 1629 567 0 0 0 chr4 136924218 136924281 -18705839 + (CTG)n Simple_repeat Simple_repeat 3 65 0 8 1629 793 186 64 0 chr4 136924463 136924603 -18705517 + B1_Mur4 SINE Alu 2 150 0 8 1629 718 271 9 65 chr4 136924620 136924837 -18705283 + B3 SINE B2 1 205 -11 8 1629 416 292 60 22 chr4 136924858 136925040 -18705080 + ID_B1 SINE B4 1 189 -35 8 1629 427 237 98 15 chr4 136925077 136925210 -18704910 + ID_B1 SINE B4 80 223 -1 8 1629 605 162 14 84 chr4 136925256 136925398 -18704722 + B1_Mur3 SINE Alu 15 146 -3 8 1629 400 279 43 35 chr4 136925417 136925532 -18704588 + RSINE1 SINE B4 21 136 -29 8 1629 1159 68 0 7 chr4 136925567 136925705 -18704415 + B1_Mus2 SINE Alu 1 138 -9 8 1629 207 0 0 0 chr4 136925705 136925728 -18704392 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1629 622 281 59 64 chr4 136925746 136925982 -18704138 + B4A SINE B4 2 236 -56 8 1629 239 337 26 106 chr4 136926043 136926156 -18703964 + PB1 SINE Alu 7 110 -17 8 1629 189 154 0 0 chr4 136926236 136926275 -18703845 + G-rich Low_complexity Low_complexity 3 41 0 8 1629 488 148 376 13 chr4 136926539 136926696 -18703424 + ORR1C2 LTR MaLR 108 321 -63 8 1629 273 254 0 73 chr4 136926690 136926758 -18703362 - PB1D10 SINE Alu -54 63 1 8 1629 491 162 37 19 chr4 136926804 136926911 -18703209 + PB1D9 SINE Alu 12 120 0 8 1629 1153 52 0 0 chr4 136926943 136927078 -18703042 + B1_Mm SINE Alu 2 136 -11 8 1629 306 0 0 0 chr4 136927078 136927112 -18703008 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1629 609 83 0 0 chr4 136927193 136927277 -18702843 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1629 551 259 122 44 chr4 136927446 136927717 -18702403 - B4A SINE B4 0 292 1 8 1629 473 286 50 50 chr4 136927719 136927921 -18702199 + MER20 DNA MER1_type 14 215 -4 8 1629 360 160 53 0 chr4 136928094 136928169 -18701951 + PB1D10 SINE Alu 25 103 -14 8 1629 712 269 18 42 chr4 136928243 136928460 -18701660 + ID_B1 SINE B4 3 214 -10 8 1629 482 191 130 0 chr4 136928667 136928782 -18701338 + ID_B1 SINE B4 87 216 -8 8 1629 1213 44 127 0 chr4 136928792 136928950 -18701170 + B2_Mm1a SINE B2 2 179 -14 9 1629 1022 237 74 68 chr4 136929053 136929406 -18700714 + MTE2a LTR MaLR 1 355 -24 9 1629 226 279 0 0 chr4 136929516 136929577 -18700543 + MTE2a LTR MaLR 319 379 0 9 1629 267 31 0 0 chr4 136929858 136929890 -18700230 + (CAGGG)n Simple_repeat Simple_repeat 3 34 0 9 1629 215 245 126 48 chr4 136930202 136930305 -18699815 - PB1D9 SINE Alu 0 120 10 9 1629 456 262 19 0 chr4 136930343 136930446 -18699674 + B1_Mur2 SINE Alu 36 140 -9 9 1629 1269 72 0 0 chr4 136930446 136931126 -18698994 + (CA)n Simple_repeat Simple_repeat 1 680 0 9 1629 703 188 20 53 chr4 136932488 136932640 -18697480 + B1_Mus2 SINE Alu 1 147 0 9 1629 279 0 0 0 chr4 136932648 136932679 -18697441 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1629 236 231 25 118 chr4 136932685 136932803 -18697317 - B2_Mm2 SINE B2 -34 161 52 9 1629 537 228 125 8 chr4 136933125 136933253 -18696867 + RSINE1 SINE B4 2 144 -21 9 1629 402 46 46 0 chr4 136933272 136933337 -18696783 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 1629 244 258 225 0 chr4 136933538 136933575 -18696545 + B1F SINE Alu 2 148 -1 9 1629 275 171 157 12 chr4 136933575 136933658 -18696462 + ID_B1 SINE B4 127 221 -3 9 1629 472 205 12 0 chr4 136933681 136933764 -18696356 + B1_Mur1 SINE Alu 55 138 -11 9 1629 481 204 72 27 chr4 136933813 136933924 -18696196 + B1_Mur3 SINE Alu 2 117 -32 9 1629 273 149 0 0 chr4 136933935 136933982 -18696138 + ORR1B1 LTR MaLR 340 386 -8 9 1629 259 146 0 0 chr4 136933987 136934028 -18696092 - B2_Mm2 SINE B2 -154 41 1 9 1629 1126 88 92 17 chr4 136934049 136934223 -18695897 + B2_Mm2 SINE B2 1 187 -8 9 1629 639 256 135 3 chr4 136934234 136934542 -18695578 - MTE2b LTR MaLR -30 349 1 9 1629 1402 77 5 21 chr4 136934578 136934765 -18695355 - B2_Mm1t SINE B2 -8 185 2 9 1629 365 247 73 140 chr4 136934774 136934953 -18695167 - B3A SINE B2 -9 186 20 9 1629 500 270 0 0 chr4 136935225 136935351 -18694769 - RSINE1 SINE B4 -36 129 4 9 1629 390 184 79 22 chr4 136935400 136935489 -18694631 + B3A SINE B2 105 198 0 9 1629 508 246 18 0 chr4 136935652 136935762 -18694358 + ID_B1 SINE B4 84 195 -29 9 1629 437 244 63 0 chr4 136935872 136935999 -18694121 - ID_B1 SINE B4 -8 216 82 9 1629 1244 34 0 0 chr4 136936170 136936317 -18693803 + B1_Mus2 SINE Alu 1 147 0 9 1629 647 54 33 0 chr4 136936334 136936426 -18693694 - B2_Mm2 SINE B2 -14 181 87 9 1629 588 102 11 0 chr4 136936420 136936508 -18693612 - B1_Mm SINE Alu -57 90 2 9 1629 242 205 65 43 chr4 136936661 136936753 -18693367 + L1M2 LINE L1 5737 5830 -461 9 1629 269 211 77 26 chr4 136937314 136937392 -18692728 + RMER10A LTR ERVL 318 399 -43 9 1629 2876 6 3 0 chr4 136937398 136937719 -18692401 + RLTRETN_Mm LTR ERVK 1 322 0 9 1629 42456 24 1 6 chr4 136937719 136942583 -18687537 + MMETn-int LTR ERVK 1 4844 0 9 1629 2876 6 3 0 chr4 136942583 136942904 -18687216 + RLTRETN_Mm LTR ERVK 1 322 0 9 1629 1255 40 0 0 chr4 136942939 136943087 -18687033 + B1_Mus1 SINE Alu 1 148 0 9 1629 531 280 14 0 chr4 136943790 136943933 -18686187 - B1F1 SINE Alu 0 149 5 9 1629 556 231 211 6 chr4 136944654 136944815 -18685305 - MTD LTR MaLR 0 419 226 9 1629 234 188 0 0 chr4 136944823 136944871 -18685249 + T-rich Low_complexity Low_complexity 1 48 0 9 1629 216 204 0 0 chr4 136945317 136945361 -18684759 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1629 994 188 42 5 chr4 136945373 136945566 -18684554 - B3 SINE B2 -14 202 3 9 1629 376 274 87 79 chr4 136945568 136945695 -18684425 - MTD LTR MaLR -217 202 60 9 1629 375 95 324 0 chr4 136945678 136945752 -18684368 + B1_Mus2 SINE Alu 30 127 -20 9 1629 209 210 129 0 chr4 136946202 136946264 -18683856 + L2b LINE L2 3081 3150 -225 9 1629 856 267 29 15 chr4 136946572 136946777 -18683343 + B3 SINE B2 5 212 -4 9 1629 1644 32 0 0 chr4 136946787 136946976 -18683144 + B2_Mm1a SINE B2 5 193 0 9 1629 21 36 0 0 chr4 136946978 136947006 -18683114 + AT_rich Low_complexity Low_complexity 1 28 0 9 1629 662 170 265 6 chr4 136947012 136947048 -18683072 - B3 SINE B2 -6 210 175 9 1629 339 85 0 0 chr4 136947048 136947095 -18683025 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 9 1629 662 170 265 6 chr4 136947095 136947224 -18682896 - B3 SINE B2 -42 174 3 9 1629 1046 149 27 11 chr4 136947305 136947488 -18682632 + B2_Mm2 SINE B2 3 188 -7 9 1629 1263 71 59 0 chr4 136947510 136947679 -18682441 + B2_Mm2 SINE B2 2 180 -15 9 1629 435 117 164 18 chr4 136947704 136947813 -18682307 + B2_Mm2 SINE B2 47 188 -5 9 1629 1153 83 7 0 chr4 136947820 136947965 -18682155 + B1_Mus1 SINE Alu 2 147 -1 9 1629 1331 79 15 40 chr4 136948144 136948343 -18681777 - B2_Mm2 SINE B2 -1 194 1 9 1629 602 267 0 76 chr4 136948387 136948519 -18681601 - RSINE1 SINE B4 -2 163 38 9 1629 2607 80 0 3 chr4 136948519 136948847 -18681273 - ORR1A2 LTR MaLR 0 327 1 9 1629 602 267 0 76 chr4 136948847 136948872 -18681248 - RSINE1 SINE B4 -128 37 18 9 1629 1064 253 135 47 chr4 136949121 136949565 -18680555 - LTR65 LTR ERV1 -20 649 167 9 1629 214 316 0 38 chr4 136949603 136949682 -18680438 - ID4_ SINE ID 0 83 8 9 1629 232 209 31 104 chr4 136949825 136949921 -18680199 - LTR77 LTR ERV1 -449 173 85 9 1629 2257 146 107 12 chr4 136949951 136950354 -18679766 - BGLII_B LTR ERVK 0 441 1 9 1629 1412 80 37 0 chr4 136950954 136951141 -18678979 + B2_Mm2 SINE B2 2 195 0 9 1629 246 128 0 0 chr4 136951624 136951663 -18678457 + (A)n Simple_repeat Simple_repeat 1 39 0 9 1629 1568 192 80 58 chr4 136951751 136951818 -18678302 - ORR1D1 LTR MaLR 0 374 316 9 1629 1361 62 62 0 chr4 136951818 136951994 -18678126 - B2_Mm2 SINE B2 -8 187 1 9 1629 1568 192 80 58 chr4 136951994 136952290 -18677830 - ORR1D1 LTR MaLR -59 315 3 9 1629 344 343 75 56 chr4 136953125 136953338 -18676782 + L1M5 LINE L1 5537 5755 -485 9 1629 1028 116 7 0 chr4 136953479 136953625 -18676495 + B1_Mus1 SINE Alu 2 148 0 9 1629 967 261 5 14 chr4 136953714 136953924 -18676196 + B4 SINE B4 16 223 -69 9 1629 602 301 0 22 chr4 136953930 136954069 -18676051 + RSINE1 SINE B4 5 140 -25 9 1629 198 0 0 0 chr4 136954081 136954103 -18676017 + (CAGA)n Simple_repeat Simple_repeat 4 25 0 9 1629 1792 5 0 0 chr4 136954177 136954370 -18675750 - B2_Mm1a SINE B2 0 193 1 9 1629 225 0 0 0 chr4 136954390 136954415 -18675705 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1629 1578 57 0 5 chr4 136954517 136954710 -18675410 + B2_Mm1a SINE B2 1 192 -1 9 1629 412 315 134 31 chr4 136954735 136954958 -18675162 - MLT1I LTR MaLR -4 407 162 9 1629 273 29 0 0 chr4 136955132 136955166 -18674954 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1629 264 277 10 135 chr4 136955223 136955319 -18674801 - RSINE1 SINE B4 0 165 82 9 1629 482 254 29 36 chr4 136955323 136955351 -18674769 - B1_Mur2 SINE Alu 0 149 124 9 1629 1200 113 21 11 chr4 136955351 136955539 -18674581 + B2_Mm2 SINE B2 2 191 -4 9 1629 482 254 29 36 chr4 136955539 136955649 -18674471 - B1_Mur2 SINE Alu -26 123 12 9 1629 668 242 88 124 chr4 136955644 136955694 -18674426 + ORR1D2 LTR MaLR 149 197 -173 9 1629 3958 101 14 14 chr4 136955694 136956257 -18673863 + RMER2 LTR ERV1 1 563 -4 9 1629 668 242 88 124 chr4 136956257 136956389 -18673731 + ORR1D2 LTR MaLR 198 337 -33 9 1629 1205 55 0 14 chr4 136956389 136956537 -18673583 - B1_Mus2 SINE Alu -1 146 1 9 1629 668 242 88 124 chr4 136956537 136956579 -18673541 + ORR1D2 LTR MaLR 338 366 -4 9 1629 219 196 43 0 chr4 136956585 136956631 -18673489 - B1F2 SINE Alu -101 48 1 9 1629 549 0 0 0 chr4 136956757 136956818 -18673302 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1629 1426 61 39 0 chr4 136956829 136957010 -18673110 + B2_Mm2 SINE B2 3 190 -5 9 1629 246 32 0 0 chr4 136957563 136957594 -18672526 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1629 449 355 7 0 chr4 136957621 136957776 -18672344 + MIR SINE MIR 15 170 -92 9 1629 778 161 27 40 chr4 136957791 136957940 -18672180 - B1_Mus1 SINE Alu -1 147 1 9 1629 1008 173 56 28 chr4 136958678 136958892 -18671228 + URR1A DNA MER1_type 5 224 -2 9 1629 478 145 33 50 chr4 136958993 136959097 -18671023 - PB1D10 SINE Alu 0 117 17 9 1629 689 265 75 0 chr4 136959167 136959367 -18670753 + ID_B1 SINE B4 2 216 -8 9 1629 682 237 14 0 chr4 136959375 136959514 -18670606 + B1_Mur1 SINE Alu 2 142 -7 9 1629 1043 86 173 0 chr4 136960073 136960235 -18669885 + B2_Mm2 SINE B2 2 191 -4 9 1629 273 279 44 0 chr4 136960559 136960627 -18669493 - ID4_ SINE ID 0 83 13 9 1629 554 238 84 8 chr4 136960652 136960783 -18669337 - B1_Mur1 SINE Alu 0 149 9 9 1629 855 20 0 0 chr4 136961128 136961229 -18668891 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 9 1629 852 64 0 0 chr4 136961230 136961339 -18668781 - B1_Mm SINE Alu -4 143 35 9 1629 379 173 197 98 chr4 136961232 136961354 -18668766 - B4 SINE B4 -72 220 87 9 1629 327 294 116 27 chr4 136961896 136962008 -18668112 - MER91C DNA Tip100 -2 138 17 9 1629 340 298 106 0 chr4 136962284 136962388 -18667732 + PB1D7 SINE Alu 1 115 -5 9 1629 545 134 10 0 chr4 136962397 136962494 -18667626 + B2_Mm1t SINE B2 96 193 0 9 1629 897 257 24 0 chr4 136962498 136962708 -18667412 + ID_B1 SINE B4 1 215 -9 9 1629 584 184 10 10 chr4 136962848 136962952 -18667168 - B1_Mus2 SINE Alu 0 147 44 9 1629 260 196 35 18 chr4 136963184 136963241 -18666879 + B1_Mur4 SINE Alu 2 59 -91 9 1629 527 280 99 0 chr4 136963259 136963441 -18666679 - B3 SINE B2 -12 204 5 9 1629 530 278 54 36 chr4 136963448 136963660 -18666460 - ID_B1 SINE B4 -69 223 6 9 1629 600 212 9 0 chr4 136964214 136964327 -18665793 + B1_Mur4 SINE Alu 35 148 -2 9 1629 753 194 0 0 chr4 136964338 136964493 -18665627 + GA-rich Low_complexity Low_complexity 3 157 0 9 1629 282 216 26 39 chr4 136964671 136964748 -18665372 + PB1D7 SINE Alu 24 99 -21 1 1629 494 227 72 0 chr4 136964777 136964874 -18665246 + RSINE1 SINE B4 48 151 -14 1 1629 319 323 0 41 chr4 136964920 136965017 -18665103 + B1F SINE Alu 6 98 -51 1 1629 207 0 0 0 chr4 136965026 136965049 -18665071 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1629 187 200 264 91 chr4 136965984 136966105 -18664015 + MIRm SINE MIR 52 193 -83 1 1629 835 119 16 16 chr4 136966212 136966340 -18663780 - B1_Mus1 SINE Alu 0 148 21 1 1629 319 244 101 94 chr4 136966218 136966367 -18663753 - B4A SINE B4 -71 221 72 1 1629 1397 83 5 10 chr4 136966545 136966739 -18663381 + B2_Mm1a SINE B2 1 193 0 1 1629 416 223 43 43 chr4 136966765 136966882 -18663238 + PB1D10 SINE Alu 1 117 0 1 1629 318 278 0 69 chr4 136966939 136967055 -18663065 + GA-rich Low_complexity Low_complexity 3 110 0 1 1629 503 287 47 34 chr4 136967062 136967210 -18662910 + RSINE1 SINE B4 12 161 -4 1 1629 540 0 0 0 chr4 136967213 136967273 -18662847 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1629 180 0 0 0 chr4 136967273 136967292 -18662828 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1629 210 226 113 0 chr4 136967553 136967615 -18662505 - ID4 SINE ID -11 72 4 1 1629 998 138 23 23 chr4 136967639 136967658 -18662462 - B2_Mm2 SINE B2 -18 177 162 1 1629 564 15 0 0 chr4 136967658 136967723 -18662397 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1629 998 138 23 23 chr4 136967723 136967874 -18662246 - B2_Mm2 SINE B2 -34 161 7 1 1629 376 200 276 52 chr4 136967880 136967996 -18662124 - B1_Mur4 SINE Alu -8 142 1 1 1629 1340 30 0 6 chr4 136968885 136969055 -18661065 + (TTC)n Simple_repeat Simple_repeat 1 169 0 1 1629 345 172 0 0 chr4 136969058 136969122 -18660998 + CT-rich Low_complexity Low_complexity 3 66 0 1 1629 392 144 14 0 chr4 136969125 136969233 -18660887 - B2_Mm2 SINE B2 0 195 47 1 1629 1117 132 23 0 chr4 136969261 136969435 -18660685 - B2_Mm1t SINE B2 -14 179 2 1 1629 899 114 8 8 chr4 136969527 136969659 -18660461 - B1_Mur4 SINE Alu -2 148 17 1 1629 198 0 0 0 chr4 136969703 136969725 -18660395 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1629 1109 101 0 0 chr4 136969725 136969873 -18660247 - B1_Mus1 SINE Alu 0 148 1 1 203 1961 197 67 52 chr4 136969873 136970414 -18659706 - RLTR31_Mur LTR ERVK -4 549 1 1 1630 1092 64 102 0 chr4 136970509 136970666 -18659454 + B2_Mm2 SINE B2 1 173 -22 1 1630 312 247 157 49 chr4 136970715 136970817 -18659303 + B1F SINE Alu 18 130 -19 1 1630 394 283 114 24 chr4 136970871 136970994 -18659126 + ID_B1 SINE B4 9 142 -82 1 1630 553 214 94 39 chr4 136970996 136971180 -18658940 + RMER17C LTR ERVK 1 195 -215 1 1630 1326 78 0 0 chr4 136971180 136971360 -18658760 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1630 553 214 94 39 chr4 136971360 136971408 -18658712 + RMER17C LTR ERVK 196 246 -164 1 1630 1040 206 18 36 chr4 136971389 136971726 -18658394 + RMER17C LTR ERVK 80 410 0 1 1630 191 0 0 94 chr4 136971779 136971811 -18658309 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1630 507 17 0 0 chr4 136971951 136972011 -18658109 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1630 183 42 0 0 chr4 136972317 136972341 -18657779 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1630 473 194 133 0 chr4 136972356 136972454 -18657666 + B1_Mur1 SINE Alu 39 149 0 1 1630 379 295 0 51 chr4 136972462 136972580 -18657540 + PB1D10 SINE Alu 1 112 -5 1 1630 475 330 48 62 chr4 136972588 136972683 -18657437 + B4A SINE B4 8 107 -185 1 1630 4672 114 78 104 chr4 136972683 136973610 -18656510 + RMER17A2 LTR ERVK 1 903 -3 1 1630 475 330 48 62 chr4 136973610 136973724 -18656396 + B4A SINE B4 108 214 -78 1 1630 1393 179 37 212 chr4 136973741 136974203 -18655917 - ORR1C2 LTR MaLR -3 381 1 1 1630 672 239 25 0 chr4 136974203 136974362 -18655758 + RSINE1 SINE B4 2 164 -1 1 1630 325 115 313 34 chr4 136974418 136974533 -18655587 - B2_Mm2 SINE B2 -1 194 48 1 1630 1368 79 11 0 chr4 136974577 136974754 -18655366 - B2_Mm1t SINE B2 -14 179 1 1 1630 308 300 9 83 chr4 136974773 136974882 -18655238 + MT2B LTR ERVL 164 264 -337 1 1630 529 224 19 0 chr4 136974784 136974891 -18655229 + B1_Mur4 SINE Alu 12 120 -30 1 1630 243 88 0 0 chr4 136974914 136974948 -18655172 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1630 955 164 6 6 chr4 136974956 136975116 -18655004 + B2_Mm1t SINE B2 6 165 -28 1 1630 352 144 0 20 chr4 136975160 136975274 -18654846 + B2_Mm2 SINE B2 47 194 -1 1 1630 228 130 0 0 chr4 136975274 136975320 -18654800 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1630 540 0 0 0 chr4 136975500 136975560 -18654560 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1630 657 25 0 0 chr4 136975659 136975738 -18654382 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1630 1181 89 77 11 chr4 136975754 136975935 -18654185 + B2_Mm2 SINE B2 3 195 0 1 1630 735 136 97 114 chr4 136976037 136976138 -18653982 - URR1B DNA MER1_type -11 214 117 1 1630 1123 115 0 0 chr4 136976138 136976286 -18653834 - B1_Mus1 SINE Alu 0 148 1 1 1630 735 136 97 114 chr4 136976286 136976359 -18653761 - URR1B DNA MER1_type -109 116 43 1 1630 408 321 29 57 chr4 136977038 136977213 -18652907 + MIR SINE MIR 1 170 -92 1 1630 683 157 8 47 chr4 136977227 136977354 -18652766 - B1_Mus1 SINE Alu -1 147 26 1 1630 1012 169 56 28 chr4 136978102 136978315 -18651805 + URR1A DNA MER1_type 5 223 -3 1 1630 488 133 33 50 chr4 136978425 136978529 -18651591 - PB1D10 SINE Alu 0 117 17 1 1630 648 275 75 0 chr4 136978599 136978799 -18651321 + ID_B1 SINE B4 2 216 -8 1 1630 693 237 14 0 chr4 136978807 136978946 -18651174 + B1_Mur1 SINE Alu 2 142 -7 1 1630 1078 74 173 0 chr4 136979533 136979695 -18650425 + B2_Mm2 SINE B2 2 191 -4 1 1630 264 299 15 0 chr4 136980020 136980087 -18650033 - ID4_ SINE ID -3 80 13 1 1630 566 231 84 8 chr4 136980112 136980243 -18649877 - B1_Mur1 SINE Alu 0 149 9 1 1630 308 291 35 11 chr4 136980165 136980252 -18649868 - B4A SINE B4 -121 171 83 1 1630 257 340 116 27 chr4 136981101 136981213 -18648907 - MER91C DNA Tip100 -2 138 17 1 1630 324 304 108 0 chr4 136981489 136981591 -18648529 + PB1D7 SINE Alu 1 113 -7 1 1630 1044 146 0 0 chr4 136981591 136981769 -18648351 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1630 455 114 0 25 chr4 136981769 136981850 -18648270 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 1 1630 519 17 0 0 chr4 136981850 136981910 -18648210 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1 1630 838 203 0 0 chr4 136981914 136982057 -18648063 + B1_Mus1 SINE Alu 1 143 -5 1 1630 992 99 0 7 chr4 136982090 136982232 -18647888 + B1_Mm SINE Alu 2 142 -5 1 1630 1268 111 0 31 chr4 136982237 136982432 -18647688 + B2_Mm2 SINE B2 3 191 -4 1 1630 1227 86 23 6 chr4 136982441 136982616 -18647504 + B2_Mm2 SINE B2 3 180 -15 1 1630 1262 103 11 0 chr4 136982616 136982801 -18647319 + B2_Mm1t SINE B2 2 188 -5 1 1630 1008 242 19 0 chr4 136982823 136983034 -18647086 + ID_B1 SINE B4 1 215 -9 1 1630 576 194 10 10 chr4 136983174 136983278 -18646842 - B1_Mus2 SINE Alu 0 147 44 1 1630 317 175 17 17 chr4 136983530 136983588 -18646532 + B1_Mur4 SINE Alu 2 59 -91 1 1630 634 218 102 16 chr4 136983596 136983788 -18646332 - B3A SINE B2 -22 194 5 1 1630 523 280 54 39 chr4 136983795 136983841 -18646279 - ID_B1 SINE B4 -69 223 157 1 1630 297 182 182 0 chr4 136983841 136983907 -18646213 - PB1D10 SINE Alu -22 95 18 1 1630 523 280 54 39 chr4 136983907 136984008 -18646112 - ID_B1 SINE B4 -69 156 6 1 1630 569 244 9 0 chr4 136984555 136984670 -18645450 + B1_Mur4 SINE Alu 35 150 0 1 1630 678 203 0 0 chr4 136984681 136984834 -18645286 + GA-rich Low_complexity Low_complexity 2 154 0 1 1630 305 271 9 86 chr4 136985018 136985123 -18644997 + PB1D7 SINE Alu 24 120 0 1 1630 485 237 72 0 chr4 136985149 136985246 -18644874 + RSINE1 SINE B4 48 151 -14 1 1630 26 30 0 0 chr4 136985255 136985288 -18644832 + AT_rich Low_complexity Low_complexity 1 33 0 1 1630 332 318 0 61 chr4 136985301 136985415 -18644705 + PB1D10 SINE Alu 6 112 -5 1 1630 1238 35 0 0 chr4 136985441 136985586 -18644534 + B1_Mm SINE Alu 3 147 0 1 1630 216 0 0 0 chr4 136985586 136985610 -18644510 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1630 1664 42 0 0 chr4 136985610 136985801 -18644319 + B2_Mm1t SINE B2 2 192 -1 1 1630 205 245 215 58 chr4 136986724 136986847 -18643273 + MIRb SINE MIR 50 193 -83 1 1630 822 103 9 0 chr4 136986975 136987091 -18643029 - B1_Mus1 SINE Alu -4 144 28 1 1630 319 248 18 79 chr4 136986993 136987107 -18643013 - RLTR25B LTR ERVK -507 521 415 1 1630 475 244 17 9 chr4 136987338 136987454 -18642666 + PB1D10 SINE Alu 1 117 0 1 1630 352 293 17 8 chr4 136987517 136987634 -18642486 + GA-rich Low_complexity Low_complexity 3 120 0 1 1630 490 271 32 38 chr4 136987651 136987808 -18642312 + RSINE1 SINE B4 4 159 -6 1 1630 486 0 0 0 chr4 136987809 136987863 -18642257 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1630 210 226 113 0 chr4 136988127 136988189 -18641931 - ID4 SINE ID -11 72 4 1 1630 1000 161 17 22 chr4 136988213 136988232 -18641888 - B2_Mm2 SINE B2 -18 177 162 1 1630 513 0 0 0 chr4 136988232 136988289 -18641831 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 1 1630 1000 161 17 22 chr4 136988289 136988447 -18641673 - B2_Mm2 SINE B2 -34 161 1 1 1630 399 191 276 52 chr4 136988447 136988563 -18641557 - B1_Mur4 SINE Alu -8 142 1 1 1630 1284 65 0 0 chr4 136989491 136989752 -18640368 + (TTC)n Simple_repeat Simple_repeat 1 261 0 1 1630 448 84 367 0 chr4 136989752 136989858 -18640262 - B2_Mm2 SINE B2 -4 191 47 1 1630 1231 115 35 0 chr4 136989886 136990060 -18640060 - B2_Mm2 SINE B2 -14 181 2 1 1630 931 105 7 29 chr4 136990161 136990298 -18639822 - B1_Mur4 SINE Alu 0 150 17 1 1630 1061 90 21 0 chr4 136990317 136990461 -18639659 - B1_Mm SINE Alu 0 147 1 1 1630 1864 206 112 41 chr4 136990463 136990973 -18639147 - RLTR31_Mur LTR ERVK 0 553 8 1 1630 1052 181 69 41 chr4 136990996 136991313 -18638807 + RMER17C LTR ERVK 85 410 0 1 1630 363 17 33 33 chr4 136991358 136991419 -18638701 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 1 1630 216 0 0 0 chr4 136991568 136991592 -18638528 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1630 657 0 0 0 chr4 136991899 136991972 -18638148 + (TAAAA)n Simple_repeat Simple_repeat 3 75 0 1 1630 461 204 133 0 chr4 136991986 136992084 -18638036 + B1_Mur1 SINE Alu 39 149 0 1 1630 477 254 8 58 chr4 136992092 136992213 -18637907 + PB1D9 SINE Alu 1 115 -5 1 1630 575 305 47 57 chr4 136992219 136992431 -18637689 + B4A SINE B4 7 216 -76 1 1630 1349 179 92 24 chr4 136992443 136992735 -18637385 - ORR1C2 LTR MaLR 0 384 73 1 1630 872 105 0 8 chr4 136992708 136992833 -18637287 + B2_Mm1t SINE B2 42 165 -28 1 1630 352 124 0 22 chr4 136992877 136992943 -18637177 + B2_Mm2 SINE B2 47 109 -107 1 1630 198 0 0 0 chr4 136992957 136992979 -18637141 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1630 201 39 0 0 chr4 136992983 136993009 -18637111 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1630 256 235 111 0 chr4 136993010 136993091 -18637029 + MER103 DNA DNA 21 110 -56 1 1630 468 0 0 0 chr4 136993188 136993240 -18636880 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1630 420 288 107 54 chr4 136993591 136993833 -18636287 + LTR33 LTR ERVL 261 515 0 1 1630 285 325 25 0 chr4 136993882 136993958 -18636162 + RSINE1 SINE B4 3 80 -85 1 1630 1703 220 65 10 chr4 136993958 136994344 -18635776 - MTD LTR MaLR 0 419 13 1 1630 709 167 95 0 chr4 136994353 136994479 -18635641 + B1_Mus1 SINE Alu 10 147 -1 1 1630 233 268 22 44 chr4 136994502 136994592 -18635528 + RSINE1 SINE B4 76 163 -2 1 1630 454 293 41 0 chr4 136994612 136994735 -18635385 + ID_B1 SINE B4 81 208 -16 1 1630 181 256 49 37 chr4 136995027 136995108 -18635012 - L2a LINE L2 -64 3362 3281 1 1630 611 280 85 0 chr4 136995487 136995687 -18634433 + ID_B1 SINE B4 2 218 -6 1 1630 249 224 0 0 chr4 136995708 136995766 -18634354 + GA-rich Low_complexity Low_complexity 2 59 0 1 1630 575 206 40 114 chr4 136996024 136996199 -18633921 + RSINE1 SINE B4 4 165 0 1 1630 719 168 6 0 chr4 136996199 136996366 -18633754 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1630 284 181 0 12 chr4 136996381 136996465 -18633655 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1630 26 0 0 0 chr4 136996558 136996584 -18633536 + AT_rich Low_complexity Low_complexity 1 26 0 1 1630 1206 56 0 0 chr4 136996585 136996729 -18633391 + B1_Mm SINE Alu 2 145 -2 1 1630 423 0 0 0 chr4 136996729 136996776 -18633344 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1630 787 211 200 0 chr4 136996782 136996957 -18633163 - B3 SINE B2 -2 214 5 1 1630 367 325 8 23 chr4 136997204 136997333 -18632787 + MTD LTR MaLR 84 210 -209 1 1630 1005 224 15 0 chr4 136997347 136997543 -18632577 + B3 SINE B2 4 202 -14 1 1630 861 10 0 0 chr4 136997543 136997641 -18632479 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 1 1630 608 173 37 152 chr4 136997676 136997790 -18632330 + MTD LTR MaLR 272 375 -44 1 1630 216 0 0 0 chr4 136997790 136997814 -18632306 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 1630 559 204 81 29 chr4 136997818 136997954 -18632166 - B1F2 SINE Alu -6 143 1 1 1630 608 173 37 152 chr4 136997954 136997998 -18632122 + MTD LTR MaLR 376 416 -3 1 1630 943 66 0 8 chr4 136998131 136998253 -18631867 - B2_Mm2 SINE B2 -73 122 2 1 1630 455 279 180 0 chr4 136998275 136998436 -18631684 - B3A SINE B2 -8 190 1 1 1630 891 273 14 14 chr4 136998442 136998650 -18631470 - B3 SINE B2 -7 209 2 1 1630 512 215 107 0 chr4 136998920 136999041 -18631079 + B3 SINE B2 70 203 -13 1 1630 534 239 0 0 chr4 136999043 136999177 -18630943 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 1630 277 148 3 195 chr4 136999420 136999514 -18630606 - PB1D10 SINE Alu 0 149 62 1 1630 699 184 7 62 chr4 136999823 136999968 -18630152 + ID_B1 SINE B4 87 223 -1 1 1630 1270 63 40 0 chr4 137000262 137000437 -18629683 + B2_Mm2 SINE B2 6 187 -8 1 1630 1585 52 16 0 chr4 137000443 137000635 -18629485 + B2_Mm2 SINE B2 1 195 0 2 1630 295 275 0 81 chr4 137001353 137001450 -18628670 + MLT1A LTR MaLR 27 115 -259 3 1630 709 176 0 16 chr4 137001450 137001577 -18628543 + B1_Mus1 SINE Alu 2 126 -22 4 1630 982 238 57 5 chr4 137001632 137001843 -18628277 + ID_B1 SINE B4 2 223 -1 5 1630 564 279 32 7 chr4 137001854 137002009 -18628111 + RSINE1 SINE B4 3 161 -4 6 1630 249 83 0 0 chr4 137002009 137002045 -18628075 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1630 512 256 8 16 chr4 137002151 137002274 -18627846 - B3 SINE B2 -6 210 89 8 1630 1554 66 0 19 chr4 137002309 137002525 -18627595 + ORR1A2 LTR MaLR 2 213 -114 9 1630 1340 42 8 0 chr4 137002587 137002853 -18627267 + (GAAA)n Simple_repeat Simple_repeat 1 268 0 1 1630 339 264 99 0 chr4 137002855 137002946 -18627174 + RMER30 DNA MER1_type 99 198 -4 1 1630 1369 100 21 0 chr4 137003016 137003206 -18626914 + B2_Mm2 SINE B2 1 194 -1 1 1630 434 120 13 0 chr4 137003227 137003302 -18626818 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1630 925 92 14 0 chr4 137003604 137003746 -18626374 + (GGA)n Simple_repeat Simple_repeat 3 146 0 1 1630 287 300 204 12 chr4 137005233 137005405 -18624715 + MIRb SINE MIR 39 243 -25 1 1630 276 294 38 38 chr4 137006094 137006200 -18623920 + L1MC4 LINE L1 7486 7591 -451 1 1630 1230 55 0 0 chr4 137006202 137006348 -18623772 + B1_Mus2 SINE Alu 2 147 0 1 1630 320 293 8 33 chr4 137006414 137006534 -18623586 + (CATATA)n Simple_repeat Simple_repeat 6 122 0 1 1630 384 286 100 40 chr4 137006638 137006838 -18623282 - RMER15 LTR ERVL -13 562 351 1 1630 428 316 37 19 chr4 137007355 137007516 -18622604 + RSINE1 SINE B4 2 165 0 2 1630 195 201 36 29 chr4 137007597 137007735 -18622385 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 1630 1166 49 21 0 chr4 137007754 137007897 -18622223 + B1_Mus2 SINE Alu 2 147 0 2 1630 286 205 33 33 chr4 137007915 137008006 -18622114 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 2 1630 275 38 0 188 chr4 137008069 137008093 -18622027 - B1_Mur4 SINE Alu 0 150 138 2 1630 351 0 0 0 chr4 137008093 137008132 -18621988 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2 1630 314 99 5 76 chr4 137008132 137008206 -18621914 - B1_Mm SINE Alu -13 136 66 2 1630 581 58 78 0 chr4 137008457 137008560 -18621560 + (GGGA)n Simple_repeat Simple_repeat 2 112 0 2 1630 237 325 103 26 chr4 137009065 137009182 -18620938 + L3b LINE CR1 355 480 -2 2 1630 257 200 73 44 chr4 137009746 137009814 -18620306 - ID_B1 SINE B4 -9 215 146 2 1630 531 0 0 0 chr4 137010336 137010395 -18619725 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1630 348 24 0 0 chr4 137011455 137011496 -18618624 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1630 432 106 0 0 chr4 137011496 137011562 -18618558 - MTD LTR MaLR -4 415 350 3 1630 229 222 0 53 chr4 137011763 137011820 -18618300 - MLT1J-int LTR MaLR -144 1243 1190 3 1630 901 203 106 53 chr4 137013031 137013276 -18616844 - MTE2a LTR MaLR -1 378 121 3 1630 338 200 0 15 chr4 137013467 137013533 -18616587 - PB1D10 SINE Alu -36 81 17 3 1630 551 261 14 14 chr4 137013512 137013652 -18616468 - B1_Mur1 SINE Alu -7 142 3 3 1630 867 102 0 0 chr4 137013658 137013786 -18616334 + (TCC)n Simple_repeat Simple_repeat 3 130 0 3 1630 1282 124 38 0 chr4 137013796 137013981 -18616139 - B2_Mm2 SINE B2 -1 194 3 3 1630 230 297 110 73 chr4 137014083 137014192 -18615928 + PB1D10 SINE Alu 2 114 -3 3 1630 280 329 42 60 chr4 137014405 137014573 -18615547 - MIR SINE MIR -38 224 60 4 1630 200 225 0 0 chr4 137014707 137014747 -18615373 + L2b LINE L2 3322 3361 -14 4 1630 526 260 57 25 chr4 137015169 137015327 -18614793 - RSINE1 SINE B4 0 165 3 4 1630 311 291 72 88 chr4 137015464 137015477 -18614643 - B4A SINE B4 -56 236 184 4 1630 597 248 14 0 chr4 137015477 137015618 -18614502 - B1F2 SINE Alu 0 149 7 4 1630 311 291 72 88 chr4 137015618 137015645 -18614475 - B4A SINE B4 -56 183 59 4 1630 333 0 0 0 chr4 137015784 137015821 -18614299 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 4 1630 960 259 14 14 chr4 137015849 137016068 -18614052 + ID_B1 SINE B4 6 224 0 4 1630 183 42 0 0 chr4 137016190 137016214 -18613906 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1630 1093 73 0 0 chr4 137016214 137016351 -18613769 - B1_Mus2 SINE Alu -10 137 1 4 1630 732 154 54 0 chr4 137016354 137016484 -18613636 - B1_Mus2 SINE Alu 0 147 11 4 1630 1027 243 9 5 chr4 137017367 137017582 -18612538 + ID_B1 SINE B4 2 217 -7 5 1630 459 343 29 34 chr4 137017775 137017983 -18612137 + Charlie10a DNA MER1_type 70 276 -4 5 1630 508 225 142 0 chr4 137018530 137018650 -18611470 + RSINE1 SINE B4 4 140 -25 5 1630 1654 26 5 0 chr4 137018688 137018878 -18611242 + B2_Mm1a SINE B2 1 191 -2 5 1630 646 133 0 62 chr4 137019256 137019384 -18610736 + B1_Mur1 SINE Alu 30 149 0 5 1630 449 259 49 28 chr4 137019509 137019652 -18610468 + B1F SINE Alu 3 148 -1 5 1630 413 185 0 0 chr4 137019655 137019720 -18610400 + ID4 SINE ID 3 67 -16 5 1630 559 211 88 22 chr4 137019761 137019897 -18610223 + B1_Mus1 SINE Alu 4 148 0 5 1630 257 68 0 22 chr4 137021676 137021721 -18608399 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1630 1119 63 14 7 chr4 137021758 137021902 -18608218 + B1_Mus2 SINE Alu 1 145 -2 5 1630 220 78 45 45 chr4 137021904 137021971 -18608149 + A-rich Low_complexity Low_complexity 2 68 0 6 1630 312 265 157 0 chr4 137021972 137022055 -18608065 + PB1D10 SINE Alu 1 96 -21 6 1630 687 236 186 11 chr4 137022123 137022311 -18607809 - ID_B1 SINE B4 0 224 4 6 1630 413 309 74 44 chr4 137022319 137022493 -18607627 - B3A SINE B2 0 198 30 6 1630 510 286 14 50 chr4 137022497 137022637 -18607483 - RSINE1 SINE B4 -27 138 4 6 1630 728 91 0 9 chr4 137022643 137022754 -18607366 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 6 1630 187 387 71 16 chr4 137022765 137022891 -18607229 - MIRb SINE MIR -73 195 63 6 1630 459 325 45 0 chr4 137023885 137024039 -18606081 + RSINE1 SINE B4 4 164 -1 6 1630 396 0 0 0 chr4 137024048 137024092 -18606028 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1630 231 273 0 43 chr4 137024607 137024699 -18605421 + G-rich Low_complexity Low_complexity 1 88 0 6 1630 1099 51 0 14 chr4 137027810 137027950 -18602170 - B1_Mus2 SINE Alu -9 138 1 7 1630 219 308 31 0 chr4 137028093 137028158 -18601962 - ID4_ SINE ID -7 76 10 7 1630 749 234 31 6 chr4 137028294 137028453 -18601667 - RSINE1 SINE B4 0 165 3 7 1630 536 347 71 46 chr4 137028549 137028915 -18601205 - Lx8 LINE L1 -2 7471 7097 7 1630 339 287 30 0 chr4 137029185 137029286 -18600834 - RSINE1 SINE B4 -60 105 2 7 1630 226 380 0 0 chr4 137030509 137030588 -18599532 - L2b LINE L2 -6 3369 3291 7 1630 225 283 94 0 chr4 137030735 137030841 -18599279 - L2b LINE L2 -312 3114 2999 7 1630 1006 219 27 0 chr4 137030958 137031141 -18598979 - B3A SINE B2 -9 189 2 7 1630 302 264 81 9 chr4 137031916 137032027 -18598093 + MIRc SINE MIR 9 127 -141 7 1630 189 254 16 33 chr4 137033526 137033587 -18596533 - MIRm SINE MIR -207 69 10 7 1630 214 244 0 0 chr4 137033941 137033982 -18596138 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 7 1630 556 241 0 0 chr4 137035398 137035506 -18594614 + PB1D10 SINE Alu 2 109 -8 8 1630 235 270 16 0 chr4 137035513 137035586 -18594534 + ID_B1 SINE B4 82 156 -136 8 1630 630 0 0 0 chr4 137036092 137036162 -18593958 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1630 264 279 59 15 chr4 137036308 137036445 -18593675 + MIR SINE MIR 35 185 -83 8 1630 232 318 63 9 chr4 137037122 137037233 -18592887 + MIRm SINE MIR 35 151 -125 8 1630 472 294 8 0 chr4 137037456 137037575 -18592545 + ID_B1 SINE B4 1 120 -104 8 1630 380 300 0 0 chr4 137037642 137037742 -18592378 + ID_B1 SINE B4 121 220 -4 8 1630 356 278 33 42 chr4 137038372 137038492 -18591628 + MER5A1 DNA MER1_type 13 131 -35 8 1630 3269 61 2 0 chr4 137038924 137039319 -18590801 - MTB LTR MaLR 0 400 5 8 1630 1203 36 0 0 chr4 137039322 137039461 -18590659 + B1_Mus1 SINE Alu 1 139 -9 8 1630 308 329 77 19 chr4 137039806 137039961 -18590159 - Charlie19a DNA Charlie -136 250 87 8 1630 210 37 0 0 chr4 137042370 137042397 -18587723 + (CCCCAG)n Simple_repeat Simple_repeat 6 32 0 9 1630 319 262 93 22 chr4 137042947 137043068 -18587052 - MIRb SINE MIR -96 180 55 9 1630 315 295 150 6 chr4 137043915 137044082 -18586038 - MIRc SINE MIR -53 215 25 9 1630 235 146 98 0 chr4 137044366 137044407 -18585713 - MIRm SINE MIR -5 271 227 9 1630 310 192 46 4 chr4 137045851 137045927 -18584193 - B3A SINE B2 -75 123 45 9 1630 212 352 86 0 chr4 137046481 137046586 -18583534 + MIRc SINE MIR 30 143 -125 9 1630 551 191 175 115 chr4 137046621 137046804 -18583316 + B3A SINE B2 1 194 -4 9 1630 238 275 127 77 chr4 137046817 137046833 -18583287 - B2_Mm1t SINE B2 0 193 179 9 1630 919 163 214 0 chr4 137046833 137047011 -18583109 - B3 SINE B2 0 216 1 9 1630 449 250 198 8 chr4 137047011 137047175 -18582945 - B3A SINE B2 -3 195 4 9 1630 354 318 45 50 chr4 137047991 137048309 -18581811 - L2a LINE L2 -107 3268 2948 9 1630 222 37 0 0 chr4 137048325 137048352 -18581768 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1630 212 336 103 59 chr4 137049243 137049379 -18580741 - FAM SINE Alu -32 279 138 1 1630 902 250 5 10 chr4 137049260 137049462 -18580658 - ID_B1 SINE B4 -22 202 2 1 1630 577 211 24 31 chr4 137049477 137049604 -18580516 - B1_Mur1 SINE Alu -10 139 14 1 1630 366 320 40 103 chr4 137049604 137049651 -18580469 - B4 SINE B4 -76 216 54 1 1630 627 221 50 7 chr4 137049970 137050111 -18580009 + B1F1 SINE Alu 3 149 0 1 1630 305 267 91 8 chr4 137050441 137050562 -18579558 + MIR3 SINE MIR 9 139 -69 1 1630 252 258 30 0 chr4 137051620 137051686 -18578434 + MIRc SINE MIR 85 152 -116 1 1630 634 223 8 0 chr4 137051867 137051997 -18578123 + B1_Mus2 SINE Alu 4 134 -13 1 1630 523 274 52 0 chr4 137052033 137052168 -18577952 + ID_B1 SINE B4 83 224 0 1 1630 267 340 0 94 chr4 137052190 137052217 -18577903 + ID_B1 SINE B4 66 209 -15 1 1630 430 222 83 114 chr4 137052217 137052349 -18577771 + B1F SINE Alu 7 134 -15 1 1630 262 230 0 169 chr4 137052392 137052481 -18577639 + B1F SINE Alu 61 134 -15 1 1630 229 213 0 197 chr4 137052449 137052525 -18577595 + B1_Mur1 SINE Alu 74 134 -15 1 1630 291 248 0 186 chr4 137052498 137052622 -18577498 + B1F SINE Alu 43 143 -6 1 1630 585 0 0 0 chr4 137052777 137052842 -18577278 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1630 249 237 17 0 chr4 137052855 137052914 -18577206 - B4A SINE B4 -232 60 1 1 1630 264 194 12 132 chr4 137054980 137055063 -18575057 - ID SINE ID -147 77 5 1 1630 366 215 32 87 chr4 137055075 137055190 -18574930 - PB1D10 SINE Alu -8 109 3 1 1630 441 0 0 0 chr4 137055431 137055480 -18574640 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1630 527 271 39 0 chr4 137055667 137055796 -18574324 - ID_B1 SINE B4 -9 215 82 1 1630 236 323 70 31 chr4 137057198 137057326 -18572794 - YREP_Mm Unknown Unknown -1494 318 186 1 1630 561 233 9 0 chr4 137057218 137057334 -18572786 + ID_B1 SINE B4 107 223 -1 1 1630 1173 87 0 0 chr4 137057360 137057521 -18572599 + B2_Mm2 SINE B2 1 161 -34 1 1630 234 0 0 0 chr4 137057521 137057547 -18572573 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 1630 412 275 144 27 chr4 137057586 137057732 -18572388 + RSINE1 SINE B4 3 165 0 1 1630 210 266 78 0 chr4 137058095 137058159 -18571961 + L2b LINE L2 3296 3364 -11 1 1630 411 325 75 27 chr4 137059934 137060249 -18569871 + L2a LINE L2 3015 3396 -30 1 1630 204 311 40 13 chr4 137060402 137060477 -18569643 - MIRb SINE MIR -80 188 112 1 1630 1412 89 11 0 chr4 137060599 137060790 -18569330 - B2_Mm1t SINE B2 0 193 1 1 1630 387 258 22 0 chr4 137060876 137060965 -18569155 + ID_B1 SINE B4 81 171 -53 1 1630 1125 57 43 0 chr4 137060983 137061124 -18568996 - B1_Mus1 SINE Alu 0 148 2 1 1630 236 246 123 0 chr4 137061220 137061285 -18568835 + ID_B1 SINE B4 143 215 -9 1 1630 836 163 22 0 chr4 137061339 137061474 -18568646 + B1_Mur2 SINE Alu 3 140 -9 1 1630 1111 50 14 7 chr4 137061483 137061625 -18568495 - B1_Mus1 SINE Alu -1 147 5 1 1630 509 293 79 59 chr4 137061653 137061907 -18568213 + B4A SINE B4 29 287 -5 1 1630 326 23 0 23 chr4 137061928 137061972 -18568148 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1630 297 276 61 10 chr4 137062516 137062615 -18567505 - ORR1E LTR MaLR -254 105 2 1 1630 300 299 0 0 chr4 137062951 137062987 -18567133 - L1MEg LINE L1 -4139 1945 1910 1 1630 1245 47 0 0 chr4 137062987 137063135 -18566985 - B1_Mus1 SINE Alu 0 148 1 1 1630 300 299 0 0 chr4 137063135 137063165 -18566955 - L1MEg LINE L1 -4175 1909 1880 1 1630 197 319 13 86 chr4 137064462 137064613 -18565507 - L3 LINE CR1 -101 4388 4249 1 1630 638 154 212 8 chr4 137064731 137064849 -18565271 + B1_Mur4 SINE Alu 1 142 -8 1 1630 723 277 28 28 chr4 137064895 137065144 -18564976 + B4A SINE B4 44 292 0 1 1630 196 30 29 29 chr4 137065180 137065214 -18564906 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1630 191 286 0 0 chr4 137065343 137065392 -18564728 - MIRc SINE MIR -113 155 107 1 1630 247 285 87 34 chr4 137065478 137065610 -18564510 - MIR SINE MIR -81 127 2 1 1630 227 243 28 28 chr4 137068410 137068482 -18561638 + (TGGG)n Simple_repeat Simple_repeat 2 73 0 1 1630 605 14 14 0 chr4 137068885 137068959 -18561161 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1630 858 228 95 9 chr4 137068990 137069211 -18560909 + B4A SINE B4 2 241 -51 1 1630 313 295 74 41 chr4 137069208 137069406 -18560714 + B3 SINE B2 10 216 0 1 1630 424 255 26 70 chr4 137069416 137069572 -18560548 + B1_Mur2 SINE Alu 1 149 0 1 1630 738 258 0 24 chr4 137069584 137069751 -18560369 + RSINE1 SINE B4 3 165 0 1 1630 361 224 0 0 chr4 137069769 137069836 -18560284 + B4A SINE B4 222 288 -4 1 1630 289 221 118 0 chr4 137070296 137070389 -18559731 - PB1D10 SINE Alu -10 110 1 1 1630 1694 26 0 0 chr4 137070799 137070991 -18559129 - B2_Mm1a SINE B2 -1 192 1 1 1630 938 161 199 6 chr4 137072050 137072231 -18557889 + B3 SINE B2 1 216 0 1 1630 223 318 0 0 chr4 137074063 137074126 -18555994 - L4 LINE RTE -183 1846 1784 1 1630 1572 122 0 0 chr4 137076744 137076965 -18553155 - URR1B DNA MER1_type 0 225 5 1 1630 506 329 21 0 chr4 137076988 137077131 -18552989 - ID_B1 SINE B4 0 224 79 1 1630 285 376 14 34 chr4 137078993 137079139 -18550981 - MIRb SINE MIR -97 171 29 1 1630 695 231 82 39 chr4 137079241 137079448 -18550672 + B3 SINE B2 1 216 0 1 1630 318 106 0 0 chr4 137080980 137081027 -18549093 + (TCC)n Simple_repeat Simple_repeat 1 47 0 1 1630 342 226 110 14 chr4 137081188 137081322 -18548798 - PB1D7 SINE Alu -13 136 1 1 1630 384 336 0 25 chr4 137081340 137081459 -18548661 - PB1D10 SINE Alu 0 117 2 1 1630 714 238 104 0 chr4 137081462 137081664 -18548456 - ID_B1 SINE B4 0 224 2 1 1630 800 188 0 57 chr4 137081677 137081694 -18548426 - B1_Mur2 SINE Alu 0 149 137 1 1630 849 20 0 0 chr4 137081694 137081793 -18548327 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 1 1630 800 188 0 57 chr4 137081793 137081933 -18548187 - B1_Mur2 SINE Alu -13 136 1 1 1630 423 0 0 0 chr4 137081959 137082006 -18548114 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1630 432 0 0 0 chr4 137082513 137082561 -18547559 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1630 598 289 159 31 chr4 137082566 137082823 -18547297 - B4 SINE B4 0 292 3 1 1630 200 331 90 51 chr4 137083145 137083301 -18546819 - MIRb SINE MIR -32 236 75 1 1630 881 157 120 45 chr4 137084113 137084313 -18545807 + B3 SINE B2 1 215 -1 1 1630 186 43 0 0 chr4 137084317 137084340 -18545780 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1630 235 310 65 60 chr4 137085629 137085649 -18544471 - MIR3 SINE MIR -37 171 152 1 1630 980 150 62 28 chr4 137085649 137085827 -18544293 - B2_Mm2 SINE B2 -11 184 1 1 1630 329 277 70 29 chr4 137085827 137085974 -18544146 - MIRb SINE MIR -114 154 3 1 1630 568 291 0 15 chr4 137086793 137086929 -18543191 - ID_B1 SINE B4 -7 217 84 1 1630 557 282 12 43 chr4 137086971 137087134 -18542986 + RSINE1 SINE B4 8 165 0 1 1630 279 0 0 0 chr4 137087897 137087928 -18542192 + (TGG)n Simple_repeat Simple_repeat 1 31 0 1 1630 1016 193 65 15 chr4 137088125 137088325 -18541795 - B3 SINE B2 -6 210 1 1 1630 387 83 0 0 chr4 137088411 137088471 -18541649 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1630 356 269 36 18 chr4 137088485 137088595 -18541525 - PB1D10 SINE Alu -3 114 3 1 1630 360 333 45 8 chr4 137088595 137088638 -18541482 - ID SINE ID -137 87 40 1 1630 216 0 0 0 chr4 137088710 137088734 -18541386 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1630 308 109 0 83 chr4 137088762 137088822 -18541298 - B2_Mm2 SINE B2 -94 101 47 1 1630 1186 113 11 22 chr4 137088869 137089050 -18541070 - B2_Mm1t SINE B2 -14 179 1 1 1630 207 0 0 0 chr4 137089062 137089085 -18541035 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1630 1193 48 0 0 chr4 137089095 137089242 -18540878 - B1_Mm SINE Alu 0 147 1 1 1630 1417 70 5 0 chr4 137090004 137090190 -18539930 - B2_Mm1a SINE B2 -5 188 2 1 1630 248 237 51 0 chr4 137090334 137090393 -18539727 - B1F SINE Alu -13 136 75 1 1630 248 222 0 31 chr4 137090427 137090492 -18539628 - MIRm SINE MIR -15 261 199 1 1630 321 289 12 0 chr4 137090736 137090819 -18539301 + L2b LINE L2 3289 3372 -3 1 1630 372 267 10 10 chr4 137092398 137092500 -18537620 + PB1D10 SINE Alu 1 102 -15 1 1630 286 258 0 15 chr4 137093185 137093252 -18536868 + ID4 SINE ID 4 69 -14 1 1630 649 230 196 7 chr4 137093266 137093419 -18536701 + B3A SINE B2 1 182 -16 1 1630 366 218 29 41 chr4 137093419 137093552 -18536568 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 1630 1224 115 11 5 chr4 137093552 137093736 -18536384 - B2_Mm2 SINE B2 -9 186 2 1 1630 366 218 29 41 chr4 137093736 137093774 -18536346 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1630 699 236 7 0 chr4 137093774 137093914 -18536206 + ID_B1 SINE B4 80 220 -4 1 1630 477 209 48 0 chr4 137093916 137094021 -18536099 + B1F2 SINE Alu 34 143 -6 1 1630 253 290 57 69 chr4 137094688 137094819 -18535301 + PB1D10 SINE Alu 11 139 -10 1 1630 246 356 77 0 chr4 137096938 137097042 -18533078 + MIRb SINE MIR 31 142 -126 1 1630 423 56 0 0 chr4 137097914 137097968 -18532152 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 1 1630 219 329 142 0 chr4 137098921 137099051 -18531069 + MIR SINE MIR 46 193 -75 1 1630 361 265 88 7 chr4 137099963 137100127 -18529993 + MIRb SINE MIR 20 195 -81 2 1630 188 237 119 0 chr4 137100728 137100787 -18529333 - L2b LINE L2 0 3375 3310 2 1631 220 203 138 15 chr4 137101760 137101825 -18528295 + PB1D10 SINE Alu 1 73 -44 2 1631 294 192 0 0 chr4 137101774 137101826 -18528294 + ID_B1 SINE B4 104 155 -69 2 1631 877 110 0 0 chr4 137101853 137101980 -18528140 + B1_Mur4 SINE Alu 11 137 -13 2 1631 404 298 22 58 chr4 137102051 137102100 -18528020 + B4A SINE B4 41 84 -208 2 1631 246 306 42 75 chr4 137102100 137102220 -18527900 + PB1D10 SINE Alu 1 116 -1 2 1631 203 329 0 12 chr4 137102265 137102348 -18527772 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1631 463 250 0 9 chr4 137102890 137102999 -18527121 + PB1D10 SINE Alu 2 109 -8 2 1631 259 312 13 0 chr4 137103014 137103091 -18527029 + ID4 SINE ID 3 80 -3 2 1631 815 248 61 19 chr4 137103120 137103334 -18526786 + B4 SINE B4 4 226 -66 2 1631 189 74 0 0 chr4 137103371 137103398 -18526722 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1631 210 37 0 0 chr4 137103439 137103466 -18526654 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1631 1154 92 34 6 chr4 137103529 137103704 -18526416 + B2_Mm2 SINE B2 16 195 0 2 1631 297 291 161 25 chr4 137105034 137105196 -18524924 - MIRb SINE MIR -59 209 26 2 1631 1284 241 82 24 chr4 137107313 137107477 -18522643 - MTE2b LTR MaLR -18 361 202 2 1631 237 65 0 0 chr4 137107477 137107508 -18522612 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2 1631 1284 241 82 24 chr4 137107508 137107683 -18522437 - MTE2b LTR MaLR -178 201 3 2 1631 395 205 385 6 chr4 137108456 137108612 -18521508 + ID_B1 SINE B4 7 221 -3 2 1631 259 355 72 9 chr4 137110626 137110737 -18519383 + PB1 SINE Alu 2 119 -8 2 1631 705 277 80 0 chr4 137110773 137110961 -18519159 + ID_B1 SINE B4 12 214 -10 2 1631 195 289 0 0 chr4 137111328 137111380 -18518740 + MIR SINE MIR 87 138 -70 2 1631 673 218 37 8 chr4 137111504 137111638 -18518482 - B1F SINE Alu -7 142 5 2 1631 312 208 198 8 chr4 137111755 137111876 -18518244 + B1F1 SINE Alu 1 144 -5 2 1631 909 73 33 11 chr4 137111957 137112235 -18517885 + (TAGA)n Simple_repeat Simple_repeat 1 284 0 2 1631 597 245 56 37 chr4 137112323 137112484 -18517636 - RSINE1 SINE B4 0 165 2 2 1631 550 147 0 231 chr4 137113564 137113750 -18516370 + B1_Mur1 SINE Alu 2 144 -5 2 1631 594 109 0 0 chr4 137113751 137113843 -18516277 + (GGA)n Simple_repeat Simple_repeat 2 93 0 2 1631 307 326 10 0 chr4 137113928 137114026 -18516094 + ID_B1 SINE B4 78 176 -48 2 1631 499 250 0 0 chr4 137113939 137114043 -18516077 + PB1D10 SINE Alu 9 112 -5 2 1631 412 233 8 49 chr4 137114064 137114186 -18515934 + ID_B1 SINE B4 101 217 -7 2 1631 615 165 174 0 chr4 137114203 137114318 -18515802 + RSINE1 SINE B4 27 161 -4 2 1631 22 0 0 0 chr4 137114339 137114361 -18515759 + AT_rich Low_complexity Low_complexity 1 22 0 2 1631 1053 73 5 43 chr4 137115627 137115814 -18514306 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1631 706 177 94 6 chr4 137116078 137116237 -18513883 + URR1B DNA MER1_type 48 220 -5 2 1631 747 130 0 0 chr4 137116651 137116774 -18513346 + (TCTA)n Simple_repeat Simple_repeat 3 125 0 2 1631 463 243 11 22 chr4 137116765 137116821 -18513299 + (CCCA)n Simple_repeat Simple_repeat 2 57 0 2 1631 1226 90 6 0 chr4 137116821 137116999 -18513121 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 2 1631 463 243 11 22 chr4 137116999 137117123 -18512997 + (CCCA)n Simple_repeat Simple_repeat 2 124 0 2 1631 224 271 62 54 chr4 137117155 137117284 -18512836 - L2a LINE L2 -2 3424 3295 2 1631 366 61 0 0 chr4 137118576 137118625 -18511495 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1631 302 250 0 0 chr4 137118638 137118702 -18511418 - ID4 SINE ID -19 64 1 2 1631 231 36 0 0 chr4 137118714 137118742 -18511378 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1631 1111 43 7 0 chr4 137118742 137118880 -18511240 - B1_Mus1 SINE Alu -9 139 1 2 1631 396 280 56 0 chr4 137118905 137119012 -18511108 + PB1D10 SINE Alu 1 113 -4 2 1631 547 271 29 127 chr4 137119020 137119265 -18510855 + ID_B1 SINE B4 2 222 -2 2 1631 1124 75 0 0 chr4 137119270 137119416 -18510704 + B1_Mus2 SINE Alu 2 147 0 2 1631 240 222 0 0 chr4 137119416 137119470 -18510650 + A-rich Low_complexity Low_complexity 1 54 0 2 1631 1156 61 0 0 chr4 137122128 137122276 -18507844 + B1_Mus1 SINE Alu 1 148 0 2 1631 1247 111 16 0 chr4 137122296 137122486 -18507634 + B2_Mm2 SINE B2 2 194 -1 2 1631 363 274 228 20 chr4 137122516 137122665 -18507455 + B3A SINE B2 2 181 -17 2 1631 269 176 0 13 chr4 137122682 137122757 -18507363 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1631 259 234 79 69 chr4 137122757 137122858 -18507262 + MT2B LTR ERVL 163 264 -337 2 1631 756 103 0 0 chr4 137122779 137122886 -18507234 + B1_Mur3 SINE Alu 36 142 -7 2 1631 213 39 0 0 chr4 137122888 137122914 -18507206 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 1631 1122 75 0 0 chr4 137122959 137123105 -18507015 + B1_Mm SINE Alu 2 147 0 2 1631 803 211 110 5 chr4 137123110 137123301 -18506819 - B3 SINE B2 -4 212 2 2 1631 39 0 0 0 chr4 137123314 137123353 -18506767 + AT_rich Low_complexity Low_complexity 1 39 0 2 1631 1184 47 0 0 chr4 137123353 137123501 -18506619 + B1_Mus1 SINE Alu 1 148 0 2 1631 601 226 75 0 chr4 137123544 137123677 -18506443 + B3 SINE B2 65 207 -9 2 1631 507 277 14 35 chr4 137123768 137123910 -18506210 + RSINE1 SINE B4 11 149 -16 2 1631 186 43 0 0 chr4 137123911 137123934 -18506186 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1631 443 198 23 0 chr4 137124930 137125016 -18505104 + PB1D10 SINE Alu 9 96 -21 2 1631 23 0 0 0 chr4 137125634 137125657 -18504463 + AT_rich Low_complexity Low_complexity 1 23 0 2 1631 965 51 70 42 chr4 137126856 137126999 -18503121 + B1_Mus2 SINE Alu 1 147 0 2 1631 926 185 0 18 chr4 137127533 137127698 -18502422 - B3 SINE B2 -51 165 4 2 1631 231 61 0 0 chr4 137127725 137127758 -18502362 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 1631 333 162 34 3 chr4 137127758 137127838 -18502282 - B1_Mur2 SINE Alu -14 135 45 2 1631 237 256 140 12 chr4 137127870 137127992 -18502128 - MIRb SINE MIR -118 150 9 2 1631 201 39 0 0 chr4 137128293 137128319 -18501801 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1631 464 303 19 32 chr4 137128343 137128500 -18501620 - RSINE1 SINE B4 -9 156 2 2 1631 908 128 7 7 chr4 137128581 137128730 -18501390 - B1_Mur4 SINE Alu -1 149 1 2 1631 1123 75 0 0 chr4 137128831 137128978 -18501142 - B1_Mus1 SINE Alu 0 148 2 2 1631 690 285 21 39 chr4 137128980 137129200 -18500920 - B3A SINE B2 0 216 6 2 1631 416 266 225 38 chr4 137129211 137129371 -18500749 - B4A SINE B4 -44 248 59 2 1631 786 78 230 43 chr4 137129721 137129882 -18500238 + B2_Mm1t SINE B2 1 191 -2 2 1631 508 285 43 37 chr4 137130801 137130906 -18499214 - ID_B1 SINE B4 -27 197 90 2 1631 2104 90 90 0 chr4 137130906 137131206 -18498914 - ORR1A2 LTR MaLR 0 327 1 2 1631 508 285 43 37 chr4 137131206 137131264 -18498856 - ID SINE ID -135 89 33 2 1631 21 0 0 0 chr4 137131281 137131302 -18498818 + AT_rich Low_complexity Low_complexity 1 21 0 2 1631 215 378 20 0 chr4 137131302 137131400 -18498720 - PB1D10 SINE Alu 0 117 18 2 1631 720 103 103 0 chr4 137131574 137131691 -18498429 + B2_Mm2 SINE B2 1 129 -66 2 1631 258 32 0 0 chr4 137131719 137131750 -18498370 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 1631 417 284 76 12 chr4 137131941 137132112 -18498008 + L2a LINE L2 3239 3420 -6 2 1631 610 226 53 0 chr4 137132198 137132331 -18497789 + ID_B1 SINE B4 79 218 -6 2 1631 699 310 32 20 chr4 137132335 137132588 -18497532 + B4A SINE B4 1 256 -36 2 1631 214 258 47 31 chr4 137132581 137132645 -18497475 + RSINE1 SINE B4 75 139 -26 2 1631 206 238 0 0 chr4 137132712 137132754 -18497366 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1631 369 267 35 0 chr4 137133100 137133216 -18496904 + PB1D7 SINE Alu 1 120 0 2 1631 766 151 0 0 chr4 137133243 137133369 -18496751 + B1_Mur3 SINE Alu 14 139 -10 2 1631 387 0 0 0 chr4 137133369 137133412 -18496708 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1631 219 231 0 0 chr4 137133483 137133522 -18496598 + (CACG)n Simple_repeat Simple_repeat 4 42 0 2 1631 230 233 128 1 chr4 137133524 137133618 -18496502 + B1F SINE Alu 15 119 -1 2 1631 432 91 0 0 chr4 137134622 137134688 -18495432 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1631 407 52 17 0 chr4 137134688 137134746 -18495374 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1631 222 37 0 0 chr4 137134924 137134951 -18495169 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1631 905 71 0 38 chr4 137134968 137135100 -18495020 - B1_Mm SINE Alu 0 147 21 2 1631 410 118 0 0 chr4 137135135 137135203 -18494917 + B1_Mus2 SINE Alu 80 147 0 2 1631 654 126 0 0 chr4 137135203 137135306 -18494814 + (GAA)n Simple_repeat Simple_repeat 2 104 0 2 1631 360 0 0 0 chr4 137135308 137135348 -18494772 + (CAG)n Simple_repeat Simple_repeat 2 41 0 2 1631 653 200 21 21 chr4 137135416 137135559 -18494561 + B1_Mur2 SINE Alu 1 143 -6 2 1631 265 269 93 78 chr4 137135600 137135729 -18494391 - YREP_Mm Unknown Unknown -1500 312 182 2 1631 465 182 125 24 chr4 137135625 137135756 -18494364 + ID_B1 SINE B4 104 249 -43 3 1631 352 287 0 29 chr4 137136169 137136273 -18493847 + MLT1L LTR MaLR 191 291 -319 3 1631 986 101 89 0 chr4 137136282 137136440 -18493680 + B2_Mm2 SINE B2 5 176 -19 3 1631 274 175 0 34 chr4 137136440 137136499 -18493621 + B4A SINE B4 90 146 -146 3 1631 534 167 36 27 chr4 137136446 137136557 -18493563 + PB1D9 SINE Alu 9 120 0 3 1631 302 314 6 9 chr4 137136588 137136701 -18493419 + B1F2 SINE Alu 7 118 -2 3 1631 285 75 0 0 chr4 137136707 137136747 -18493373 + (ATG)n Simple_repeat Simple_repeat 3 42 0 3 1631 22 0 0 0 chr4 137136859 137136881 -18493239 + AT_rich Low_complexity Low_complexity 1 22 0 3 1631 666 154 131 0 chr4 137136881 137137011 -18493109 - B1_Mus1 SINE Alu -1 147 1 3 1631 268 325 0 0 chr4 137137030 137137110 -18493010 + ID4_ SINE ID 3 82 -1 3 1631 306 228 139 0 chr4 137137343 137137444 -18492676 - PB1D9 SINE Alu -1 119 5 3 1631 350 237 0 26 chr4 137137459 137137537 -18492583 - ID4 SINE ID 0 83 8 3 1631 1457 142 133 46 chr4 137138568 137138892 -18491228 + ORR1B1 LTR MaLR 41 392 -2 3 1631 496 250 0 25 chr4 137138900 137139019 -18491101 - ID_B1 SINE B4 -2 222 107 3 1631 595 288 15 35 chr4 137139336 137139534 -18490586 + B3A SINE B2 5 198 0 3 1631 1079 93 37 0 chr4 137139625 137139786 -18490334 - B2_Mm2 SINE B2 -22 173 7 3 1631 187 317 62 48 chr4 137139791 137139937 -18490183 + MIR SINE MIR 59 206 -56 3 1631 769 164 15 7 chr4 137139948 137140083 -18490037 + B1_Mm SINE Alu 1 136 -11 3 1631 192 40 0 0 chr4 137140099 137140124 -18489996 + (TTTTTG)n Simple_repeat Simple_repeat 1 25 0 3 1631 1213 41 0 0 chr4 137140125 137140272 -18489848 - B1_Mus2 SINE Alu 0 147 1 3 1631 210 222 37 0 chr4 137140439 137140493 -18489627 - L2a LINE L2 -260 3166 3111 3 1631 319 268 12 170 chr4 137140498 137140588 -18489532 + B4A SINE B4 6 68 -156 3 1631 224 260 11 154 chr4 137140588 137140679 -18489441 + B1F1 SINE Alu 3 80 -69 3 1631 254 95 24 0 chr4 137140682 137140724 -18489396 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 1631 1093 82 0 0 chr4 137140724 137140870 -18489250 - B1_Mm SINE Alu 0 147 2 3 1631 433 185 94 42 chr4 137140965 137141061 -18489059 + B1_Mur1 SINE Alu 28 128 -21 3 1631 230 136 23 0 chr4 137141072 137141116 -18489004 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1631 391 138 23 0 chr4 137141115 137141202 -18488918 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1631 1241 111 6 0 chr4 137141237 137141417 -18488703 + B2_Mm2 SINE B2 1 181 -14 3 1631 257 102 370 18 chr4 137141502 137141610 -18488510 + B2_Mm2 SINE B2 47 192 -3 3 1631 216 266 47 0 chr4 137141618 137141682 -18488438 + B1F1 SINE Alu 49 115 -34 3 1631 299 130 0 18 chr4 137141700 137141755 -18488365 + (GAA)n Simple_repeat Simple_repeat 3 56 0 3 1631 1193 41 0 0 chr4 137141945 137142092 -18488028 + B1_Mus2 SINE Alu 1 147 0 3 1631 264 229 33 0 chr4 137142424 137142485 -18487635 - B3A SINE B2 -96 102 40 3 1631 1108 50 73 24 chr4 137142488 137142653 -18487467 - B2_Mm2 SINE B2 0 195 23 3 1631 689 123 17 42 chr4 137142663 137142674 -18487446 - PB1D9 SINE Alu -2 118 108 3 1631 185 0 40 0 chr4 137142674 137142699 -18487421 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1631 689 123 17 42 chr4 137142699 137142806 -18487314 - PB1D9 SINE Alu -13 107 3 3 1631 279 0 0 0 chr4 137142853 137142884 -18487236 + (TCC)n Simple_repeat Simple_repeat 3 33 0 3 1631 251 330 5 70 chr4 137143253 137143439 -18486681 + RMER10A LTR ERVL 124 297 -145 3 1631 885 131 20 7 chr4 137143829 137143975 -18486145 + B1_Mus1 SINE Alu 1 148 0 3 1631 394 224 222 62 chr4 137144200 137144232 -18485888 - B3 SINE B2 -2 214 178 3 1631 1083 82 7 0 chr4 137144232 137144379 -18485741 - B1_Mus1 SINE Alu 0 148 1 3 1631 394 224 222 62 chr4 137144379 137144508 -18485612 - B3 SINE B2 -39 177 27 3 1631 510 17 0 0 chr4 137144555 137144614 -18485506 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1631 333 123 0 0 chr4 137144614 137144679 -18485441 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1631 487 169 11 0 chr4 137145127 137145216 -18484904 - B1_Mur3 SINE Alu -9 140 51 3 1631 408 111 0 0 chr4 137145231 137145294 -18484826 + (T)n Simple_repeat Simple_repeat 1 63 0 3 1631 1187 48 0 0 chr4 137145294 137145440 -18484680 - B1_Mm SINE Alu 0 147 2 3 1631 836 167 20 70 chr4 137145441 137145641 -18484479 - B2_Mm2 SINE B2 -5 190 1 3 1631 301 248 115 29 chr4 137145693 137145710 -18484410 - ID_B1 SINE B4 -21 203 91 3 1631 537 161 0 0 chr4 137145710 137145797 -18484323 - B1_Mur4 SINE Alu -53 97 11 3 1631 325 194 0 123 chr4 137145712 137145818 -18484302 - MT2B LTR ERVL -354 247 155 3 1631 24 0 0 0 chr4 137145861 137145885 -18484235 + AT_rich Low_complexity Low_complexity 1 24 0 3 1631 671 187 141 26 chr4 137145889 137146081 -18484039 - B3 SINE B2 -1 215 2 3 1631 613 179 49 14 chr4 137146104 137146246 -18483874 - B1_Mus2 SINE Alu 0 147 1 3 1631 1338 202 99 57 chr4 137146330 137146734 -18483386 + RMER16 LTR ERVK 113 533 0 3 1631 431 259 89 0 chr4 137146734 137146846 -18483274 - B3A SINE B2 -28 170 49 3 1631 1003 232 91 70 chr4 137146856 137147283 -18482837 + RMER10A LTR ERVL 1 436 -6 3 1631 888 68 122 0 chr4 137147273 137147420 -18482700 - B2_Mm2 SINE B2 -4 191 27 3 1631 252 172 0 0 chr4 137147420 137147478 -18482642 + T-rich Low_complexity Low_complexity 1 58 0 3 1631 1028 68 0 45 chr4 137147480 137147634 -18482486 - B1_Mm SINE Alu 0 147 1 3 1631 295 237 0 73 chr4 137147800 137147882 -18482238 - ID_B1 SINE B4 -46 178 103 3 1631 1206 85 17 0 chr4 137148106 137148282 -18481838 + B2_Mm1t SINE B2 1 179 -14 3 1631 319 134 302 59 chr4 137148330 137148449 -18481671 + B2_Mm2 SINE B2 48 195 0 3 1631 389 260 93 47 chr4 137148467 137148531 -18481589 - B1_Mur2 SINE Alu -3 146 78 3 1631 1029 72 0 0 chr4 137148531 137148669 -18481451 + B1_Mm SINE Alu 2 139 -8 3 1631 281 47 23 0 chr4 137148669 137148712 -18481408 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1631 389 260 93 47 chr4 137148712 137148775 -18481345 - B1_Mur2 SINE Alu -72 77 13 3 1631 758 149 47 54 chr4 137148923 137149072 -18481048 - B1_Mus1 SINE Alu 0 148 1 3 1631 31 26 0 0 chr4 137150125 137150163 -18479957 + GC_rich Low_complexity Low_complexity 1 38 0 3 1631 558 248 6 50 chr4 137151387 137151548 -18478572 + B3A SINE B2 1 154 -44 3 1631 324 0 0 0 chr4 137151558 137151594 -18478526 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1631 259 349 83 0 chr4 137151770 137151879 -18478241 - ID_B1 SINE B4 -104 120 3 3 1631 597 221 47 0 chr4 137152094 137152221 -18477899 - B1_Mur4 SINE Alu 0 150 18 3 1631 548 130 171 0 chr4 137152270 137152393 -18477727 - B1_Mus1 SINE Alu 0 148 5 3 1631 232 184 0 58 chr4 137152405 137152457 -18477663 - PB1D9 SINE Alu -70 50 2 3 1631 22 35 0 0 chr4 137152636 137152665 -18477455 + AT_rich Low_complexity Low_complexity 1 29 0 3 1631 195 69 0 0 chr4 137152735 137152764 -18477356 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1631 662 165 55 41 chr4 137152764 137152909 -18477211 - B1_Mm SINE Alu 0 147 1 3 1631 335 270 237 0 chr4 137152946 137153098 -18477022 - ID_B1 SINE B4 -2 222 35 3 1631 539 156 69 60 chr4 137153506 137153622 -18476498 - B1_Mur1 SINE Alu -21 128 12 3 1631 245 235 103 0 chr4 137153757 137153825 -18476295 - PB1D10 SINE Alu 0 117 43 3 1631 682 181 6 100 chr4 137153896 137154056 -18476064 - B1_Mur4 SINE Alu 0 150 6 3 1631 769 220 94 12 chr4 137154108 137154278 -18475842 + B3 SINE B2 5 188 -28 3 1631 1472 182 105 24 chr4 137154367 137154699 -18475421 - RLTR41 LTR ERV1 -26 420 62 3 1631 392 258 66 16 chr4 137154724 137154846 -18475274 + B1_Mur2 SINE Alu 19 146 -3 3 1631 570 212 127 27 chr4 137155370 137155520 -18474600 + B3 SINE B2 6 170 -46 3 1631 483 69 0 0 chr4 137155929 137156001 -18474119 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1631 300 174 0 0 chr4 137156002 137156058 -18474062 - B1_Mur4 SINE Alu -90 59 5 3 1631 306 73 0 0 chr4 137156464 137156505 -18473615 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1631 282 289 23 109 chr4 137156749 137156877 -18473243 + PB1D9 SINE Alu 4 120 0 3 1631 249 200 39 78 chr4 137156896 137156999 -18473121 + PB1D9 SINE Alu 10 108 -12 3 1631 507 171 57 0 chr4 137157293 137157398 -18472722 - PB1D9 SINE Alu -9 111 1 3 1631 1389 22 20 98 chr4 137157505 137157709 -18472411 - B2_Mm1a SINE B2 -5 188 1 3 1631 842 107 69 58 chr4 137157727 137157915 -18472205 - B2_Mm2 SINE B2 -5 190 1 3 1631 311 279 0 9 chr4 137157977 137158082 -18472038 - Lx9 LINE L1 -134 7510 7407 3 1631 312 27 0 0 chr4 137158128 137158165 -18471955 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1631 1133 75 0 0 chr4 137158168 137158314 -18471806 - B1_Mus2 SINE Alu 0 147 2 3 1631 339 315 106 88 chr4 137158396 137158556 -18471564 + RSINE1 SINE B4 3 165 0 3 1631 328 143 0 0 chr4 137158560 137158609 -18471511 + HAL1-3A_ME LINE L1 1975 2023 -835 3 1631 420 55 0 0 chr4 137158610 137158665 -18471455 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1631 233 330 40 0 chr4 137159039 137159139 -18470981 - L1MC4 LINE L1 -502 7540 7437 3 1631 386 221 129 0 chr4 137159336 137159450 -18470670 - B1F1 SINE Alu -6 143 14 3 1631 268 272 38 28 chr4 137159466 137159572 -18470548 - PB1D10 SINE Alu -6 111 5 4 1631 474 113 69 40 chr4 137160222 137160323 -18469797 + PB1D10 SINE Alu 1 104 -13 4 1631 238 250 13 40 chr4 137160864 137160939 -18469181 - ID4 SINE ID -10 73 1 4 1631 1255 7 0 0 chr4 137162060 137162206 -18467914 - B1_Mus2 SINE Alu 0 147 2 4 1631 621 228 177 6 chr4 137162236 137162417 -18467703 + B3 SINE B2 3 214 -2 4 1631 588 84 0 0 chr4 137162426 137162509 -18467611 + B2_Mm2 SINE B2 1 83 -112 4 1631 352 222 21 72 chr4 137162843 137162855 -18467265 + MT2B LTR ERVL 153 159 -442 4 1631 545 170 40 0 chr4 137162855 137162955 -18467165 + B1_Mus2 SINE Alu 3 106 -41 4 1631 555 271 26 16 chr4 137163038 137163176 -18466944 - B3A SINE B2 -2 196 56 4 1631 477 0 0 0 chr4 137163176 137163229 -18466891 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1631 555 271 26 16 chr4 137163229 137163281 -18466839 - B3A SINE B2 -143 55 4 4 1631 1228 104 16 0 chr4 137163306 137163488 -18466632 - B2_Mm2 SINE B2 0 195 11 4 1631 273 22 21 42 chr4 137163510 137163558 -18466562 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1631 1010 80 0 7 chr4 137163558 137163697 -18466423 - B1_Mus1 SINE Alu -9 139 2 4 1631 339 85 0 0 chr4 137163707 137163754 -18466366 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1631 1020 44 73 0 chr4 137163754 137163891 -18466229 - B1_Mm SINE Alu 0 147 1 4 1631 1160 61 0 0 chr4 137164503 137164650 -18465470 - B1_Mus1 SINE Alu -1 147 1 4 1631 851 198 12 0 chr4 137164655 137164817 -18465303 - URR1A DNA MER1_type -1 225 62 4 1631 378 0 0 0 chr4 137165759 137165801 -18464319 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1631 267 264 149 39 chr4 137166953 137167109 -18463011 - RLTR20A1 LTR ERVK -250 278 87 4 1631 231 200 22 0 chr4 137168950 137168995 -18461125 - B3A SINE B2 -144 54 9 4 1631 195 129 0 0 chr4 137168995 137169026 -18461094 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 1631 937 66 0 0 chr4 137169029 137169151 -18460969 - B1_Mus1 SINE Alu 0 148 27 4 1631 439 18 0 68 chr4 137169151 137169210 -18460910 + MTB LTR MaLR 344 398 -2 4 1631 284 70 0 23 chr4 137169531 137169575 -18460545 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 4 1631 654 126 231 16 chr4 137169827 137169948 -18460172 - B1_Mur2 SINE Alu 0 149 3 4 1631 217 150 0 91 chr4 137170382 137170426 -18459694 - B1F SINE Alu -62 87 48 4 1631 22 0 0 0 chr4 137170439 137170461 -18459659 + AT_rich Low_complexity Low_complexity 1 22 0 4 1631 547 120 200 0 chr4 137170489 137170589 -18459531 - B2_Mm2 SINE B2 -7 188 69 4 1631 905 83 44 29 chr4 137170723 137170860 -18459260 - B1_Mus1 SINE Alu -9 139 1 4 1631 1164 76 123 0 chr4 137170875 137170892 -18459228 - B2_Mm1a SINE B2 -1 192 176 4 1631 540 0 0 0 chr4 137170892 137170952 -18459168 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 4 1631 1164 76 123 0 chr4 137170952 137171105 -18459015 - B2_Mm1a SINE B2 -18 175 2 4 1631 518 261 43 37 chr4 137171106 137171293 -18458827 - B3 SINE B2 -25 191 4 4 1631 642 305 80 25 chr4 137171297 137171536 -18458584 - B4 SINE B4 -28 264 13 4 1631 437 278 66 7 chr4 137172688 137172840 -18457280 + RSINE1 SINE B4 3 163 -2 4 1631 532 210 143 0 chr4 137172868 137172987 -18457133 + B1_Mur1 SINE Alu 2 137 -12 4 1631 1089 68 9 157 chr4 137173110 137173320 -18456800 - B2_Mm1a SINE B2 -14 179 1 4 1631 1681 26 0 5 chr4 137173802 137173995 -18456125 - B2_Mm1a SINE B2 -1 192 1 4 1631 472 209 18 28 chr4 137174590 137174699 -18455421 - PB1D7 SINE Alu 0 120 13 4 1631 428 283 62 0 chr4 137175036 137175149 -18454971 - B1F SINE Alu 0 149 30 4 1631 195 129 0 0 chr4 137175179 137175210 -18454910 + (CAT)n Simple_repeat Simple_repeat 2 32 0 4 1631 350 243 14 0 chr4 137175640 137175710 -18454410 - ID4_ SINE ID -11 72 2 4 1631 579 220 30 22 chr4 137175839 137175974 -18454146 - MIRc SINE MIR -43 225 90 4 1631 225 232 165 35 chr4 137176694 137176779 -18453341 + MIRc SINE MIR 88 183 -85 4 1631 258 293 78 60 chr4 137177522 137177619 -18452501 - B3 SINE B2 0 216 116 4 1631 543 90 0 0 chr4 137177619 137177697 -18452423 + (TATG)n Simple_repeat Simple_repeat 1 78 0 4 1631 287 192 16 27 chr4 137177697 137177766 -18452354 - B2_Mm2 SINE B2 -101 115 47 4 1631 992 82 75 0 chr4 137177830 137177964 -18452156 - B1_Mus1 SINE Alu 0 148 5 4 1631 1295 97 23 0 chr4 137177970 137178146 -18451974 - B2_Mm2 SINE B2 -14 181 2 4 1631 182 268 132 47 chr4 137178177 137178306 -18451814 + L3 LINE CR1 725 864 -3625 4 1631 449 235 162 103 chr4 137178366 137178570 -18451550 - B3 SINE B2 0 216 1 4 1631 288 342 66 13 chr4 137178587 137178738 -18451382 + RSINE1 SINE B4 1 159 -6 4 1631 263 190 251 18 chr4 137179427 137179506 -18450614 + B1F SINE Alu 7 98 -51 4 1631 306 274 97 123 chr4 137179541 137179695 -18450425 - RSINE1 SINE B4 0 165 16 4 1631 1170 49 14 0 chr4 137180024 137180168 -18449952 + B1_Mm SINE Alu 2 147 0 4 1631 730 256 3 11 chr4 137180192 137180379 -18449741 - B3 SINE B2 -1 197 15 4 1631 2969 71 54 12 chr4 137182027 137182452 -18447668 - L1_Mus3 LINE L1 -2 6636 6194 4 1631 253 278 65 32 chr4 137182508 137182601 -18447519 - ID4 SINE ID -44 108 13 4 1631 28 29 0 0 chr4 137182647 137182682 -18447438 + AT_rich Low_complexity Low_complexity 1 35 0 4 1631 783 0 0 0 chr4 137182823 137182910 -18447210 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 4 1631 372 277 12 0 chr4 137183061 137183144 -18446976 - PB1D10 SINE Alu -32 85 2 4 1631 737 177 22 30 chr4 137183510 137183644 -18446476 - B1_Mur3 SINE Alu -8 141 9 4 1631 441 0 0 0 chr4 137183657 137183706 -18446414 + (TCTCCC)n Simple_repeat Simple_repeat 2 50 0 4 1631 406 94 47 0 chr4 137183723 137183787 -18446333 - B1_Mus2 SINE Alu -16 131 65 4 1631 479 254 0 54 chr4 137184944 137185073 -18445047 + B1_Mur1 SINE Alu 2 123 -26 4 1631 264 272 307 0 chr4 137185268 137185386 -18444734 - B3A SINE B2 -20 178 25 4 1631 889 238 18 51 chr4 137185697 137185914 -18444206 + B3 SINE B2 4 213 -3 4 1631 1269 86 29 0 chr4 137185936 137186111 -18444009 + B2_Mm2 SINE B2 2 181 -14 4 1631 366 235 85 38 chr4 137186160 137186266 -18443854 - B4 SINE B4 -117 175 65 4 1631 733 254 76 0 chr4 137186607 137186804 -18443316 - B3 SINE B2 -4 212 1 4 1631 1526 67 0 15 chr4 137186813 137187011 -18443109 - B2_Mm2 SINE B2 0 195 1 4 1631 21 0 0 0 chr4 137187125 137187146 -18442974 + AT_rich Low_complexity Low_complexity 1 21 0 4 1631 1142 95 0 0 chr4 137187161 137187308 -18442812 - B1_Mus1 SINE Alu 0 148 2 4 1631 272 250 0 0 chr4 137188305 137188361 -18441759 + B3 SINE B2 2 57 -159 4 1631 192 77 0 0 chr4 137188407 137188433 -18441687 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 4 1631 358 286 85 7 chr4 137188822 137188963 -18441157 + RSINE1 SINE B4 4 155 -10 4 1631 299 344 15 15 chr4 137189557 137189687 -18440433 + B1F SINE Alu 13 142 -7 4 1631 929 169 7 26 chr4 137190035 137190187 -18439933 + B1_Mur2 SINE Alu 1 149 0 4 1631 588 222 35 43 chr4 137190555 137190696 -18439424 + B1_Mur2 SINE Alu 5 144 -5 4 1631 186 167 0 0 chr4 137190728 137190764 -18439356 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 4 1631 201 74 0 0 chr4 137191075 137191102 -18439018 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1631 1254 34 0 13 chr4 137191102 137191251 -18438869 - B1_Mus1 SINE Alu 0 148 2 4 1631 1915 225 111 96 chr4 137191337 137191497 -18438623 - MMAR1 DNA Mariner 0 1286 1127 4 1631 1549 44 6 0 chr4 137191497 137191679 -18438441 + B2_Mm1t SINE B2 1 183 -10 4 1631 1915 225 111 96 chr4 137191679 137192177 -18437943 - MMAR1 DNA Mariner -160 1126 618 4 1631 261 0 0 0 chr4 137192193 137192222 -18437898 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1631 1134 216 120 31 chr4 137192286 137192611 -18437509 - MMAR1 DNA Mariner -915 371 18 4 1631 1187 81 75 0 chr4 137192612 137192786 -18437334 + B2_Mm2 SINE B2 2 188 -7 4 1631 225 353 0 0 chr4 137193273 137193341 -18436779 + PB1D10 SINE Alu 42 109 -8 4 1631 295 125 0 20 chr4 137194910 137194959 -18435161 + B1_Mur2 SINE Alu 81 128 -21 4 1631 268 279 23 0 chr4 137195450 137195536 -18434584 + B1_Mus1 SINE Alu 6 93 -55 4 1631 256 213 115 21 chr4 137195549 137195645 -18434475 + PB1D7 SINE Alu 15 119 -1 4 1631 336 200 130 100 chr4 137195714 137195814 -18434306 + B3A SINE B2 23 125 -73 4 1631 241 211 56 37 chr4 137195812 137195866 -18434254 + RSINE1 SINE B4 25 79 -86 4 1631 391 242 158 38 chr4 137196228 137196361 -18433759 - B1_Mur4 SINE Alu 0 150 2 4 1631 257 186 70 14 chr4 137196452 137196523 -18433597 + B3A SINE B2 1 75 -123 4 1631 270 0 0 0 chr4 137196682 137196712 -18433408 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1631 198 103 0 0 chr4 137196751 137196780 -18433340 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1631 244 330 45 36 chr4 137196806 137196916 -18433204 - RLTR25B LTR ERVK -474 554 444 4 1631 641 186 53 30 chr4 137196821 137196954 -18433166 - B1_Mus2 SINE Alu -4 143 8 4 1631 802 175 64 13 chr4 137197002 137197158 -18432962 + B2_Mm2 SINE B2 1 164 -31 4 1631 334 268 42 51 chr4 137197503 137197621 -18432499 - PB1D10 SINE Alu 0 117 1 4 1631 234 315 85 23 chr4 137198923 137199053 -18431067 + LTR82A LTR ERVL 402 539 -333 4 1631 674 256 42 33 chr4 137199452 137199666 -18430454 + ID_B1 SINE B4 7 222 -2 4 1631 206 32 32 0 chr4 137199771 137199802 -18430318 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1631 325 241 114 0 chr4 137199804 137199883 -18430237 - RSINE1 SINE B4 -37 128 41 5 1631 318 129 56 28 chr4 137199906 137199978 -18430142 - PB1D10 SINE Alu -18 99 26 5 1631 361 163 136 55 chr4 137200659 137200769 -18429351 - PB1D9 SINE Alu -1 119 1 5 1631 688 255 36 50 chr4 137201173 137201392 -18428728 - B3 SINE B2 0 216 1 5 1631 481 231 68 82 chr4 137201473 137201619 -18428501 - B1_Mur1 SINE Alu 0 149 6 5 1631 499 316 71 28 chr4 137201641 137201823 -18428297 - B4 SINE B4 -37 255 66 5 1631 360 340 11 0 chr4 137201876 137201970 -18428150 - B3A SINE B2 -103 95 1 5 1631 195 42 0 0 chr4 137201985 137202009 -18428111 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1631 1183 43 0 7 chr4 137202009 137202149 -18427971 - B1_Mus1 SINE Alu -9 139 1 5 1631 889 225 53 21 chr4 137202164 137202215 -18427905 - B3A SINE B2 0 216 155 5 1631 189 0 0 0 chr4 137202215 137202236 -18427884 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1631 889 208 23 23 chr4 137202236 137202390 -18427730 - B3A SINE B2 -43 155 1 5 1631 276 269 14 29 chr4 137202390 137202454 -18427666 - B4 SINE B4 -194 98 36 5 1631 406 343 37 7 chr4 137202488 137202623 -18427497 - RSINE1 SINE B4 -12 153 15 5 1631 725 190 178 38 chr4 137202633 137202904 -18427216 - MTC LTR MaLR -1 420 78 5 1631 241 160 100 0 chr4 137203041 137203091 -18427029 - B3A SINE B2 -143 55 1 5 1631 382 200 34 103 chr4 137203096 137203213 -18426907 - B1_Mur4 SINE Alu -1 149 41 5 1631 29 60 0 0 chr4 137203298 137203348 -18426772 + AT_rich Low_complexity Low_complexity 1 50 0 5 1631 379 254 189 15 chr4 137203355 137203487 -18426633 - RSINE1 SINE B4 -8 157 3 5 1631 885 248 19 19 chr4 137204625 137204835 -18425285 + B3 SINE B2 1 210 -6 5 1631 479 208 158 0 chr4 137205560 137205680 -18424440 + B1_Mur2 SINE Alu 2 140 -9 5 1631 243 259 0 53 chr4 137206960 137207017 -18423103 - PB1D10 SINE Alu -60 57 4 5 1631 214 311 16 16 chr4 137206963 137207025 -18423095 - B4A SINE B4 -149 143 82 5 1631 865 213 258 100 chr4 137207203 137207563 -18422557 - MTD LTR MaLR -2 417 1 5 1631 180 0 0 0 chr4 137209385 137209405 -18420715 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1631 263 375 22 11 chr4 137209679 137209768 -18420352 + B1_Mm SINE Alu 1 90 -57 5 1631 468 257 19 19 chr4 137210486 137210593 -18419527 + PB1D7 SINE Alu 1 107 -13 5 1631 491 284 78 5 chr4 137210610 137210801 -18419319 + B3 SINE B2 2 206 -10 5 1631 21 0 0 0 chr4 137213012 137213033 -18417087 + AT_rich Low_complexity Low_complexity 1 21 0 5 1631 992 233 14 14 chr4 137214007 137214229 -18415891 - ID_B1 SINE B4 -1 223 2 5 1631 574 213 35 21 chr4 137215663 137215807 -18414313 - B1_Mus2 SINE Alu 0 147 2 5 1631 1248 54 0 0 chr4 137215925 137216073 -18414047 - B1_Mus1 SINE Alu 0 148 1 5 1631 197 83 28 0 chr4 137216076 137216112 -18414008 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1631 429 263 0 0 chr4 137216118 137216213 -18413907 - ID_B1 SINE B4 0 224 130 5 1631 558 0 0 0 chr4 137217389 137217451 -18412669 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1631 540 0 0 0 chr4 137217453 137217513 -18412607 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1631 222 200 149 81 chr4 137218011 137218098 -18412022 - PB1D9 SINE Alu 0 120 28 5 1631 272 250 16 0 chr4 137218175 137218239 -18411881 - ID2 SINE ID -8 75 11 5 1631 1225 48 0 0 chr4 137218281 137218427 -18411693 + B1_Mus1 SINE Alu 2 147 -1 5 1631 672 13 0 0 chr4 137218427 137218504 -18411616 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 5 1631 361 224 43 86 chr4 137218508 137218601 -18411519 + B1_Mur1 SINE Alu 26 114 -35 5 1631 308 259 110 12 chr4 137218587 137218669 -18411451 - PB1D7 SINE Alu -30 90 1 5 1631 1309 115 38 0 chr4 137218909 137219092 -18411028 + B2_Mm2 SINE B2 1 190 -5 5 1631 218 224 61 0 chr4 137220152 137220201 -18409919 + MIR SINE MIR 69 120 -88 5 1631 333 279 0 0 chr4 137220439 137220525 -18409595 + MIR SINE MIR 62 147 -61 5 1631 246 62 0 0 chr4 137220645 137220677 -18409443 + (CGG)n Simple_repeat Simple_repeat 3 34 0 5 1631 375 23 0 0 chr4 137221274 137221318 -18408802 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1631 715 98 9 9 chr4 137221902 137222015 -18408105 - B1_Mus1 SINE Alu -34 114 2 5 1631 198 0 0 0 chr4 137223389 137223411 -18406709 + (CCCCAG)n Simple_repeat Simple_repeat 4 25 0 5 1631 210 150 0 0 chr4 137223979 137224019 -18406101 + (CTAGG)n Simple_repeat Simple_repeat 1 40 0 5 1631 225 379 19 28 chr4 137224516 137224622 -18405498 + MIRb SINE MIR 49 153 -115 5 1631 1478 48 48 0 chr4 137224685 137224871 -18405249 + B2_Mm2 SINE B2 1 195 0 5 1631 1697 26 0 0 chr4 137224872 137225065 -18405055 + B2_Mm1a SINE B2 1 193 0 5 1631 198 0 0 0 chr4 137225065 137225087 -18405033 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1631 826 166 278 0 chr4 137225098 137225267 -18404853 + B3 SINE B2 1 216 0 5 1631 471 262 0 0 chr4 137225292 137225395 -18404725 + B1_Mur1 SINE Alu 9 111 -38 5 1631 300 27 0 0 chr4 137225395 137225432 -18404688 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1631 207 0 0 0 chr4 137225432 137225454 -18404666 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1631 1238 122 32 0 chr4 137225632 137225791 -18404329 + B2_Mm2 SINE B2 1 159 -36 5 1631 213 39 0 0 chr4 137225791 137225817 -18404303 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1631 1238 122 32 0 chr4 137225817 137225845 -18404275 + B2_Mm2 SINE B2 160 193 -2 5 1631 1633 37 0 0 chr4 137226028 137226216 -18403904 + B2_Mm1a SINE B2 1 188 -5 5 1631 223 182 0 0 chr4 137226235 137226279 -18403841 + A-rich Low_complexity Low_complexity 1 44 0 5 1631 832 151 43 0 chr4 137226494 137226633 -18403487 + B1_Mus1 SINE Alu 3 147 -1 5 1631 761 156 72 22 chr4 137226639 137226766 -18403354 + B1_Mur4 SINE Alu 5 141 -9 5 1631 364 37 18 18 chr4 137226766 137226821 -18403299 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1631 322 316 48 62 chr4 137226870 137226904 -18403216 - B1_Mur3 SINE Alu -5 144 114 5 1631 734 235 72 0 chr4 137226904 137227057 -18403063 - RSINE1 SINE B4 0 165 2 5 1631 471 229 55 9 chr4 137227057 137227167 -18402953 - PB1D10 SINE Alu -1 116 2 5 1631 882 78 169 0 chr4 137227181 137227335 -18402785 - B2_Mm2 SINE B2 -4 191 12 5 1631 1020 96 0 0 chr4 137227335 137227481 -18402639 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 5 1631 184 322 0 0 chr4 137228971 137229030 -18401090 - MIRb SINE MIR -14 254 196 5 1631 256 350 50 10 chr4 137229946 137230047 -18400073 - MIR SINE MIR -61 147 43 5 1631 204 128 40 60 chr4 137230198 137230248 -18399872 + T-rich Low_complexity Low_complexity 2 50 0 5 1631 1164 62 14 0 chr4 137230250 137230395 -18399725 - B1_Mm SINE Alu 0 147 1 5 1631 1226 96 11 38 chr4 137230396 137230580 -18399540 - B2_Mm2 SINE B2 -15 180 2 5 1631 614 219 26 0 chr4 137230585 137230699 -18399421 - PB1D10 SINE Alu 0 117 1 5 1631 217 189 0 0 chr4 137231396 137231433 -18398687 - MIRm SINE MIR -5 271 235 5 1631 235 368 9 28 chr4 137231789 137231898 -18398222 + MIRc SINE MIR 114 220 -48 5 1632 351 281 0 46 chr4 137232577 137232685 -18397435 + BC1_Mm scRNA scRNA 1 103 -49 5 1632 284 367 33 0 chr4 137232794 137232914 -18397206 - MER20B DNA MER1_type -654 129 6 5 1632 222 316 43 0 chr4 137232964 137233070 -18397050 - MIR SINE MIR -76 132 25 5 1632 378 0 0 0 chr4 137233765 137233807 -18396313 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1632 230 288 41 0 chr4 137234378 137234401 -18395719 - PB1D10 SINE Alu -2 115 40 5 1632 311 140 0 0 chr4 137234401 137234451 -18395669 - ID_B1 SINE B4 -54 170 121 5 1632 198 0 0 0 chr4 137234473 137234495 -18395625 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1632 933 210 4 67 chr4 137234495 137234720 -18395400 - ID_B1 SINE B4 -12 212 2 5 1632 677 155 154 130 chr4 137234987 137235195 -18394925 - B3 SINE B2 0 216 4 5 1632 642 218 6 64 chr4 137235275 137235432 -18394688 - B1_Mur1 SINE Alu 0 149 2 5 1632 495 252 0 0 chr4 137235651 137235750 -18394370 - MIRm SINE MIR -124 152 54 5 1632 244 307 13 26 chr4 137239614 137239691 -18390429 + MIRb SINE MIR 114 189 -79 5 1632 284 287 126 0 chr4 137240405 137240555 -18389565 - MIR SINE MIR -8 260 81 5 1632 326 279 29 0 chr4 137241287 137241391 -18388729 + MIRb SINE MIR 20 126 -142 5 1632 495 0 0 0 chr4 137242680 137242735 -18387385 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1632 183 323 46 0 chr4 137242885 137242950 -18387170 - L2b LINE L2 -23 3352 3285 5 1632 184 216 0 0 chr4 137242981 137243018 -18387102 + MIR SINE MIR 108 144 -64 5 1632 258 311 148 16 chr4 137243251 137243434 -18386686 - L2b LINE L2 -248 3127 2921 5 1632 27 29 0 0 chr4 137243742 137243776 -18386344 + AT_rich Low_complexity Low_complexity 1 34 0 5 1632 581 248 7 78 chr4 137243802 137243955 -18386165 - RSINE1 SINE B4 -21 144 3 5 1632 200 376 12 12 chr4 137243965 137244051 -18386069 - L3 LINE CR1 -113 4376 4291 5 1632 513 0 0 0 chr4 137244098 137244155 -18385965 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1632 189 316 19 67 chr4 137244538 137244643 -18385477 + MIR SINE MIR 22 121 -87 5 1632 1346 72 72 0 chr4 137244846 137245026 -18385094 - B2_Mm2 SINE B2 -1 194 2 5 1632 297 0 0 0 chr4 137245147 137245180 -18384940 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1632 727 269 45 5 chr4 137245227 137245429 -18384691 - MTE2b LTR MaLR -81 298 89 6 1632 349 122 27 0 chr4 137246777 137246851 -18383269 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1632 770 179 6 88 chr4 137246868 137247027 -18383093 - B1_Mur2 SINE Alu -2 147 2 6 1632 1292 96 43 0 chr4 137247039 137247226 -18382894 - B2_Mm2 SINE B2 0 195 1 6 1632 221 365 101 7 chr4 137247257 137247395 -18382725 - L2b LINE L2 -1 3374 3224 6 1632 186 284 72 29 chr4 137248411 137248480 -18381640 - MIRb SINE MIR -79 189 118 6 1632 537 283 14 0 chr4 137249567 137249705 -18380415 + RSINE1 SINE B4 2 141 -24 6 1632 737 188 8 0 chr4 137249753 137249886 -18380234 + B1_Mur1 SINE Alu 6 139 -10 6 1632 679 287 12 61 chr4 137249942 137250170 -18379950 - ID_B1 SINE B4 -27 265 46 6 1632 250 268 14 14 chr4 137250170 137250242 -18379878 + ID4_ SINE ID 2 73 -10 6 1632 1317 14 0 0 chr4 137250284 137250430 -18379690 + B1_Mm SINE Alu 2 147 0 6 1632 206 143 0 28 chr4 137250554 137250570 -18379550 + polypyrimidine Low_complexity Low_complexity 21 36 0 6 1632 1195 69 23 0 chr4 137250570 137250743 -18379377 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1632 206 143 0 28 chr4 137250743 137250762 -18379358 + polypyrimidine Low_complexity Low_complexity 2 20 0 6 1632 1031 102 23 6 chr4 137250762 137250939 -18379181 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1632 217 388 47 13 chr4 137250939 137250969 -18379151 - B4A SINE B4 -48 244 215 6 1632 928 130 6 6 chr4 137250969 137251131 -18378989 + (TTCC)n Simple_repeat Simple_repeat 2 163 0 6 1632 292 375 46 23 chr4 137251131 137251147 -18378973 - B4 SINE B4 -80 212 145 6 1632 532 228 0 10 chr4 137251147 137251249 -18378871 - B1_Mur2 SINE Alu -43 106 6 6 1632 327 295 0 103 chr4 137251150 137251286 -18378834 - MT2B LTR ERVL -345 256 135 6 1632 292 375 46 23 chr4 137251249 137251262 -18378858 - B4 SINE B4 -80 144 79 6 1632 298 272 66 28 chr4 137251439 137251545 -18378575 - PB1D10 SINE Alu -6 111 2 6 1632 411 217 0 0 chr4 137252179 137252248 -18377872 - ID4_ SINE ID -13 70 2 6 1632 944 176 0 13 chr4 137252300 137252450 -18377670 + B1_Mur4 SINE Alu 3 150 0 6 1632 875 209 47 37 chr4 137252458 137252503 -18377617 - B3 SINE B2 0 216 169 6 1632 180 0 0 0 chr4 137252503 137252523 -18377597 + (TATG)n Simple_repeat Simple_repeat 4 23 0 6 1632 875 209 47 37 chr4 137252523 137252691 -18377429 - B3 SINE B2 -48 168 2 6 1632 353 362 43 0 chr4 137252694 137252832 -18377288 - MIR SINE MIR -113 149 6 6 1632 319 336 16 31 chr4 137252837 137252966 -18377154 - MIRb SINE MIR -27 241 115 6 1632 181 304 114 0 chr4 137253076 137253155 -18376965 - MIR3 SINE MIR -14 194 107 6 1632 267 31 0 0 chr4 137255583 137255615 -18374505 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 6 1632 200 34 0 33 chr4 137256322 137256352 -18373768 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1632 658 221 76 0 chr4 137256363 137256494 -18373626 + RSINE1 SINE B4 10 150 -15 6 1632 455 87 14 0 chr4 137256838 137256907 -18373213 + (GGA)n Simple_repeat Simple_repeat 1 70 0 6 1632 612 223 22 44 chr4 137257125 137257261 -18372859 + RSINE1 SINE B4 9 141 -24 6 1632 187 342 49 49 chr4 137257388 137257511 -18372609 + MIRb SINE MIR 57 179 -89 6 1632 630 71 0 0 chr4 137257805 137257889 -18372231 + (GGA)n Simple_repeat Simple_repeat 2 85 0 6 1632 226 265 0 108 chr4 137258100 137258193 -18371927 + B3 SINE B2 29 111 -105 6 1632 830 215 143 0 chr4 137258119 137258281 -18371839 + B4A SINE B4 48 211 -81 6 1632 1374 101 21 0 chr4 137258281 137258470 -18371650 + B2_Mm2 SINE B2 1 193 -2 6 1632 830 215 143 0 chr4 137258470 137258516 -18371604 + B4A SINE B4 212 284 -8 6 1632 242 143 20 0 chr4 137261760 137261809 -18368311 + CT-rich Low_complexity Low_complexity 3 52 0 6 1632 977 174 0 0 chr4 137261811 137261960 -18368160 - B1_Mur4 SINE Alu -1 149 1 6 1632 22 0 0 0 chr4 137263449 137263471 -18366649 + GC_rich Low_complexity Low_complexity 1 22 0 6 1632 645 38 0 0 chr4 137266181 137266261 -18363859 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1632 181 294 97 35 chr4 137266747 137266860 -18363260 + L2b LINE L2 3145 3264 -111 6 1632 471 18 0 0 chr4 137267218 137267274 -18362846 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1632 776 163 6 0 chr4 137267326 137267498 -18362622 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 1632 260 328 55 23 chr4 137268297 137268425 -18361695 + MIRb SINE MIR 77 208 -60 6 1632 267 339 28 0 chr4 137268473 137268582 -18361538 - L2b LINE L2 -22 3353 3242 6 1632 650 233 0 0 chr4 137268727 137268847 -18361273 + PB1D7 SINE Alu 1 120 0 6 1632 196 254 55 27 chr4 137268990 137269063 -18361057 + MIR SINE MIR 84 158 -104 6 1632 381 258 21 0 chr4 137270478 137270571 -18359549 - B3A SINE B2 -51 147 53 6 1632 366 213 13 0 chr4 137270615 137270690 -18359430 - PB1D10 SINE Alu -1 116 41 6 1632 822 73 0 0 chr4 137270712 137270822 -18359298 + (TTTTC)n Simple_repeat Simple_repeat 2 111 0 6 1632 1364 79 23 0 chr4 137270822 137270999 -18359121 - B2_Mm2 SINE B2 -14 181 1 6 1632 513 173 15 29 chr4 137271046 137271183 -18358937 + (CATA)n Simple_repeat Simple_repeat 4 138 0 6 1632 1218 56 0 0 chr4 137271256 137271400 -18358720 - B1_Mus1 SINE Alu -3 145 2 6 1632 282 339 8 42 chr4 137271855 137271975 -18358145 - MIR3 SINE MIR -86 122 7 6 1632 180 0 0 0 chr4 137273417 137273437 -18356683 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1632 211 257 187 47 chr4 137276833 137276955 -18353165 + MIR SINE MIR 35 171 -97 6 1632 206 259 32 0 chr4 137278853 137279011 -18351109 + (TCCA)n Simple_repeat Simple_repeat 4 166 0 6 1632 223 328 18 44 chr4 137279366 137279655 -18350465 + CT-rich Low_complexity Low_complexity 1 281 0 6 1632 222 270 95 48 chr4 137281116 137281221 -18348899 + MIRb SINE MIR 80 189 -79 6 1632 180 320 124 43 chr4 137281822 137282008 -18348112 - L2 LINE L2 -337 3082 2882 6 1632 1274 113 0 58 chr4 137282015 137282221 -18347899 - B2_Mm2 SINE B2 0 195 2 6 1632 185 283 58 26 chr4 137283180 137283336 -18346784 + L2b LINE L2 2958 3118 -257 6 1632 967 144 0 20 chr4 137287242 137287391 -18342729 + B1_Mur4 SINE Alu 5 150 0 6 1632 433 306 97 39 chr4 137287398 137287656 -18342464 + L1MC4 LINE L1 957 1229 -4986 6 1632 198 50 75 0 chr4 137287656 137287696 -18342424 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1632 767 203 42 57 chr4 137289142 137289335 -18340785 + MER53 DNA hAT 2 191 -2 6 1632 189 319 29 14 chr4 137289507 137289577 -18340543 + L2b LINE L2 3299 3369 -6 6 1632 541 112 41 0 chr4 137289984 137290082 -18340038 + CT-rich Low_complexity Low_complexity 1 102 0 6 1632 1183 68 0 0 chr4 137290082 137290229 -18339891 - B1_Mus2 SINE Alu 0 147 1 6 1632 251 282 15 0 chr4 137290253 137290384 -18339736 + (TCCA)n Simple_repeat Simple_repeat 1 133 0 6 1632 472 344 0 13 chr4 137290384 137290540 -18339580 + (CCCA)n Simple_repeat Simple_repeat 2 155 0 6 1632 801 194 0 0 chr4 137290547 137290717 -18339403 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 6 1632 211 376 9 35 chr4 137290956 137291069 -18339051 + MIRm SINE MIR 74 183 -93 6 1632 495 0 0 0 chr4 137291760 137291815 -18338305 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1632 310 330 8 17 chr4 137291815 137291932 -18338188 - MIRb SINE MIR -127 141 26 6 1632 184 267 67 0 chr4 137292927 137292987 -18337133 + MIR SINE MIR 56 119 -143 6 1632 373 356 86 20 chr4 137293020 137293321 -18336799 + L2 LINE L2 2364 2684 -735 6 1632 312 337 20 0 chr4 137294148 137294246 -18335874 + MIRb SINE MIR 77 176 -92 6 1632 234 91 0 0 chr4 137294301 137294334 -18335786 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1632 326 271 29 11 chr4 137295202 137295314 -18334806 + MLT1J1 LTR MaLR 61 189 -323 6 1632 300 189 0 0 chr4 137296469 137296522 -18333598 + L4 LINE RTE 1777 1829 -200 6 1632 252 333 84 15 chr4 137296704 137296835 -18333285 + MIRb SINE MIR 30 169 -99 6 1632 448 306 30 60 chr4 137297051 137297218 -18332902 - RSINE1 SINE B4 0 165 4 6 1632 258 32 0 0 chr4 137297398 137297429 -18332691 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1632 216 0 0 0 chr4 137300854 137300878 -18329242 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1632 22 0 0 0 chr4 137301182 137301204 -18328916 + AT_rich Low_complexity Low_complexity 1 22 0 6 1632 682 167 120 8 chr4 137301223 137301356 -18328764 - B1_Mus1 SINE Alu 0 148 1 6 1632 257 269 60 0 chr4 137301382 137301487 -18328633 - B3A SINE B2 0 216 101 6 1632 550 204 62 0 chr4 137301576 137301689 -18328431 - B3A SINE B2 -78 120 1 6 1632 591 255 174 25 chr4 137301689 137301887 -18328233 - B4 SINE B4 -63 229 2 6 1632 183 218 0 0 chr4 137302974 137303029 -18327091 + GA-rich Low_complexity Low_complexity 2 56 0 6 1632 261 0 0 0 chr4 137303507 137303536 -18326584 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1632 241 319 14 51 chr4 137303942 137304110 -18326010 - L2b LINE L2 -225 3162 3004 6 1632 234 215 64 0 chr4 137304405 137304474 -18325646 - MIR SINE MIR -69 199 115 6 1632 478 286 78 28 chr4 137307810 137307990 -18322130 - MIRb SINE MIR -20 248 60 6 1632 553 92 10 10 chr4 137308099 137308198 -18321922 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1632 1823 148 106 133 chr4 137308956 137309083 -18321037 + RLTR20A1 LTR ERVK 1 98 -480 6 1632 252 0 0 0 chr4 137309083 137309111 -18321009 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 6 1632 2025 102 34 20 chr4 137309111 137309473 -18320647 + RLTR20A1 LTR ERVK 84 477 -101 6 1632 536 0 16 0 chr4 137309475 137309539 -18320581 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1632 270 56 0 0 chr4 137310436 137310472 -18319648 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1632 654 95 0 0 chr4 137310777 137310872 -18319248 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 1632 264 216 88 0 chr4 137312345 137312410 -18317710 + MIRm SINE MIR 83 155 -121 7 1632 220 361 46 57 chr4 137312594 137312788 -18317332 - MIR3 SINE MIR -4 204 13 7 1632 417 196 51 5 chr4 137313290 137313392 -18316728 - B4A SINE B4 -67 225 120 7 1632 272 27 27 0 chr4 137314021 137314058 -18316062 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1632 631 279 67 0 chr4 137314144 137314309 -18315811 + B3A SINE B2 6 181 -17 7 1632 286 231 6 120 chr4 137315201 137315215 -18314905 - PB1D10 SINE Alu -55 94 61 7 1632 322 273 0 0 chr4 137315215 137315281 -18314839 - ID_B1 SINE B4 -56 168 103 7 1632 286 231 6 120 chr4 137315281 137315302 -18314818 - PB1D10 SINE Alu -55 60 1 7 1632 325 136 0 29 chr4 137315309 137315377 -18314743 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1632 274 0 48 24 chr4 137315410 137315452 -18314668 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1632 217 231 19 37 chr4 137315452 137315506 -18314614 - ID4 SINE ID 0 83 31 7 1632 229 297 59 0 chr4 137315518 137315619 -18314501 - L1M4 LINE L1 -747 5431 5325 7 1632 278 240 247 10 chr4 137315621 137315716 -18314404 + RSINE1 SINE B4 2 119 -46 7 1632 513 283 32 26 chr4 137315716 137315872 -18314248 + RSINE1 SINE B4 2 158 -7 7 1632 402 74 0 0 chr4 137315872 137315926 -18314194 + (CAA)n Simple_repeat Simple_repeat 3 56 0 7 1632 1693 21 0 0 chr4 137316030 137316217 -18313903 + B2_Mm1a SINE B2 1 187 -6 7 1632 1184 37 0 0 chr4 137316545 137316680 -18313440 + B1_Mus2 SINE Alu 1 135 -12 7 1632 729 63 0 0 chr4 137316681 137316776 -18313344 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 7 1632 634 197 0 39 chr4 137316988 137317115 -18313005 + RSINE1 SINE B4 9 130 -35 7 1632 695 303 44 40 chr4 137317236 137317511 -18312609 - B4A SINE B4 0 292 17 7 1632 943 105 14 14 chr4 137317535 137317680 -18312440 - B1_Mur4 SINE Alu 0 150 6 7 1632 787 140 206 6 chr4 137317954 137318134 -18311986 - URR1A DNA MER1_type -10 216 1 7 1632 243 404 10 0 chr4 137318736 137318840 -18311280 - MIR SINE MIR -126 136 32 7 1632 468 255 136 41 chr4 137319069 137319216 -18310904 + RSINE1 SINE B4 5 165 0 7 1632 970 149 213 0 chr4 137319247 137319421 -18310699 + B3 SINE B2 1 211 -5 7 1632 560 221 87 0 chr4 137319453 137319580 -18310540 + B1_Mus2 SINE Alu 5 142 -5 7 1632 198 0 0 0 chr4 137319763 137319785 -18310335 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1632 648 192 8 8 chr4 137319900 137320031 -18310089 + RSINE1 SINE B4 4 134 -31 7 1632 762 32 0 0 chr4 137320047 137320140 -18309980 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1632 244 353 26 0 chr4 137320229 137320345 -18309775 - L1M4 LINE L1 -1992 4154 4036 7 1632 180 0 0 0 chr4 137320618 137320638 -18309482 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 7 1632 1105 142 5 21 chr4 137320779 137320966 -18309154 + B2_Mm2 SINE B2 5 188 -7 7 1632 213 394 54 16 chr4 137322542 137322671 -18307449 - L2a LINE L2 0 3426 3293 7 1632 611 243 7 20 chr4 137322686 137322833 -18307287 + ID_B1 SINE B4 24 168 -56 7 1632 361 218 63 13 chr4 137322837 137322916 -18307204 + MTE2a LTR MaLR 19 101 -278 7 1632 720 228 5 92 chr4 137322970 137323084 -18307036 + MTE2a LTR MaLR 211 317 -62 7 1632 1013 116 7 0 chr4 137323084 137323230 -18306890 - B1_Mus1 SINE Alu -1 147 1 7 1632 720 228 5 92 chr4 137323230 137323299 -18306821 + MTE2a LTR MaLR 318 378 -1 7 1632 248 128 149 0 chr4 137323300 137323347 -18306773 + ID_B1 SINE B4 164 217 -7 7 1632 266 0 29 0 chr4 137323773 137323807 -18306313 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1632 507 56 0 0 chr4 137325349 137325420 -18304700 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1632 556 214 8 33 chr4 137326489 137326610 -18303510 + B1_Mur1 SINE Alu 2 119 -30 7 1632 525 259 26 2 chr4 137326611 137326755 -18303365 - MIR SINE MIR -58 210 63 7 1632 263 232 153 31 chr4 137327510 137327608 -18302512 + PB1D10 SINE Alu 1 110 -7 7 1632 254 226 0 0 chr4 137327561 137327614 -18302506 + ID_B1 SINE B4 171 223 -1 7 1632 667 239 7 7 chr4 137328915 137329058 -18301062 + B1F1 SINE Alu 2 144 -5 7 1632 203 315 22 0 chr4 137329063 137329152 -18300968 + GA-rich Low_complexity Low_complexity 2 92 0 7 1632 363 315 24 47 chr4 137329305 137329475 -18300645 - MIRc SINE MIR -87 181 16 7 1632 293 0 27 0 chr4 137330201 137330238 -18299882 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1632 266 258 40 13 chr4 137330442 137330532 -18299588 - ID4_ SINE ID -55 97 6 7 1632 205 329 193 35 chr4 137330538 137330683 -18299437 - MIR SINE MIR -93 169 2 7 1632 1079 139 0 63 chr4 137331007 137331214 -18298906 - B2_Mm2 SINE B2 0 195 2 7 1632 224 289 19 0 chr4 137331227 137331279 -18298841 - PB1D7 SINE Alu -63 57 5 7 1632 1504 42 26 10 chr4 137331392 137331584 -18298536 + B2_Mm2 SINE B2 1 195 0 7 1632 1203 43 0 0 chr4 137331586 137331726 -18298394 + B1_Mus1 SINE Alu 1 140 -8 7 1632 1368 56 0 0 chr4 137331726 137331941 -18298179 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 7 1632 762 69 0 0 chr4 137331962 137332063 -18298057 + (GAAAA)n Simple_repeat Simple_repeat 3 103 0 7 1632 434 62 0 45 chr4 137332063 137332130 -18297990 + B1_Mm SINE Alu 84 147 0 7 1632 228 135 0 0 chr4 137332130 137332167 -18297953 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1632 653 267 69 79 chr4 137332410 137332613 -18297507 + ID_B1 SINE B4 12 212 -12 7 1632 663 124 0 0 chr4 137332615 137332728 -18297392 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 7 1632 189 107 0 0 chr4 137332748 137332776 -18297344 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1632 1218 36 0 0 chr4 137332786 137332925 -18297195 - B1_Mus2 SINE Alu -8 139 1 7 1632 628 133 228 9 chr4 137333453 137333567 -18296553 - B1_Mur4 SINE Alu -7 143 5 7 1632 387 230 29 11 chr4 137333577 137333687 -18296433 - B1_Mur1 SINE Alu -6 143 2 7 1632 216 0 0 0 chr4 137333695 137333719 -18296401 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1632 373 328 115 8 chr4 137333936 137334170 -18295950 + L1ME2 LINE L1 5625 5883 -281 7 1632 328 306 128 9 chr4 137334224 137334435 -18295685 + L1M5 LINE L1 3358 3593 -2553 7 1632 514 272 36 56 chr4 137334771 137334966 -18295154 + ID_B1 SINE B4 2 192 -32 7 1632 1120 67 0 0 chr4 137334967 137335101 -18295019 + B1_Mm SINE Alu 1 134 -13 7 1632 255 31 0 0 chr4 137335101 137335133 -18294987 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1632 468 35 0 0 chr4 137335183 137335241 -18294879 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1632 796 250 86 15 chr4 137335241 137335604 -18294516 - B4 SINE B4 -20 272 1 7 1632 212 307 107 0 chr4 137335669 137335744 -18294376 + ID2 SINE ID 1 83 0 7 1632 928 244 47 88 chr4 137335983 137336280 -18293840 + B4A SINE B4 8 292 0 7 1632 231 229 0 45 chr4 137336281 137336391 -18293729 + (CATA)n Simple_repeat Simple_repeat 4 108 0 7 1632 235 200 22 0 chr4 137336474 137336519 -18293601 + PB1D9 SINE Alu 3 48 -72 7 1632 699 239 0 0 chr4 137336548 137336686 -18293434 + ID_B1 SINE B4 80 217 -7 7 1632 252 240 37 74 chr4 137336698 137336779 -18293341 + MTC-int LTR MaLR 1022 1099 -159 7 1632 1241 42 0 0 chr4 137336791 137336934 -18293186 - B1_Mus2 SINE Alu 0 147 5 7 1632 809 167 71 6 chr4 137336948 137337117 -18293003 + MTC-int LTR MaLR 1078 1257 -1 7 1632 2470 124 74 15 chr4 137337119 137337512 -18292608 + MTC LTR MaLR 2 417 -4 7 1632 299 330 38 28 chr4 137338263 137338289 -18291831 - PB1D10 SINE Alu -8 109 3 7 1632 344 288 12 0 chr4 137338289 137338369 -18291751 - ID_B1 SINE B4 -60 164 84 7 1632 184 336 89 18 chr4 137338408 137338520 -18291600 + L2b LINE L2 3061 3180 -195 7 1632 837 255 33 5 chr4 137338856 137339069 -18291051 + ID_B1 SINE B4 5 223 -1 7 1632 1368 164 9 14 chr4 137339072 137339289 -18290831 + B3 SINE B2 1 216 0 7 1632 27 29 0 0 chr4 137339292 137339326 -18290794 + AT_rich Low_complexity Low_complexity 1 34 0 7 1632 195 377 37 43 chr4 137340237 137340398 -18289722 + MIR SINE MIR 23 182 -80 7 1632 210 300 200 0 chr4 137340600 137340670 -18289450 + MIR3 SINE MIR 15 98 -110 7 1632 205 255 0 21 chr4 137341842 137341890 -18288230 - L2a LINE L2 0 3426 3380 7 1632 1178 69 25 0 chr4 137341935 137342351 -18287769 + (TCTA)n Simple_repeat Simple_repeat 1 426 0 7 1632 242 313 84 0 chr4 137342859 137342942 -18287178 + MIRc SINE MIR 66 155 -113 7 1632 377 272 149 44 chr4 137342946 137343127 -18286993 + RMER30 DNA MER1_type 2 201 -1 7 1632 930 164 14 14 chr4 137343131 137343279 -18286841 + B1_Mur1 SINE Alu 2 149 0 7 1632 477 148 0 0 chr4 137343281 137343362 -18286758 + (GGA)n Simple_repeat Simple_repeat 2 82 0 7 1632 1248 48 0 0 chr4 137343386 137343533 -18286587 + B1_Mus2 SINE Alu 1 147 0 7 1632 387 0 0 0 chr4 137344013 137344056 -18286064 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1632 317 329 92 18 chr4 137344513 137344677 -18285443 + MER117 DNA MER1_type 18 193 -4 7 1632 383 188 183 25 chr4 137345579 137345699 -18284421 - B1F SINE Alu -5 144 6 7 1632 413 228 264 16 chr4 137345700 137345714 -18284406 - ID_B1 SINE B4 0 224 212 7 1632 961 58 15 0 chr4 137345714 137345851 -18284269 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 7 1632 413 228 264 16 chr4 137345851 137345965 -18284155 - ID_B1 SINE B4 -13 211 64 7 1632 277 225 107 48 chr4 137346553 137346637 -18283483 + PB1D10 SINE Alu 27 115 -2 7 1632 285 29 0 0 chr4 137347059 137347093 -18283027 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1632 483 284 34 51 chr4 137347568 137347746 -18282374 - Charlie8 DNA MER1_type -2208 220 46 8 1632 361 211 13 38 chr4 137347893 137347972 -18282148 - MIR SINE MIR -68 140 64 8 1632 945 230 18 54 chr4 137348012 137348164 -18281956 + ID_B1 SINE B4 3 147 -77 8 1632 1669 32 0 0 chr4 137348164 137348352 -18281768 + B2_Mm1t SINE B2 2 189 -4 8 1632 945 230 18 54 chr4 137348352 137348420 -18281700 + ID_B1 SINE B4 148 215 -9 8 1632 234 0 0 0 chr4 137348423 137348449 -18281671 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 8 1632 570 54 0 0 chr4 137348521 137348595 -18281525 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 1632 236 280 0 0 chr4 137348614 137348664 -18281456 + MIR SINE MIR 74 123 -85 8 1632 294 232 9 66 chr4 137349244 137349350 -18280770 - RLTR25B LTR ERVK -488 540 441 8 1632 913 69 0 0 chr4 137349274 137349390 -18280730 - B1_Mus1 SINE Alu -32 116 1 8 1632 288 229 8 39 chr4 137349282 137349409 -18280711 - ORR1B1-int LTR MaLR -755 754 632 8 1632 238 182 96 58 chr4 137349484 137349569 -18280551 - MIR SINE MIR -110 152 73 8 1632 221 379 68 0 chr4 137350708 137350811 -18279309 + L2b LINE L2 3261 3370 -5 8 1632 534 31 0 0 chr4 137351335 137351399 -18278721 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1632 253 237 117 13 chr4 137351400 137351477 -18278643 - PB1D9 SINE Alu -8 112 28 8 1632 36 23 0 0 chr4 137352280 137352323 -18277797 + GC_rich Low_complexity Low_complexity 1 43 0 8 1632 197 248 265 10 chr4 137353328 137353430 -18276690 - MIRb SINE MIR -107 161 34 8 1632 281 266 20 7 chr4 137354080 137354158 -18275962 + ID4 SINE ID 4 81 -71 8 1632 404 255 60 3 chr4 137354592 137354700 -18275420 + PB1D7 SINE Alu 1 115 -5 8 1632 487 204 21 0 chr4 137355194 137355287 -18274833 + B1_Mus1 SINE Alu 11 105 -43 8 1632 792 286 81 42 chr4 137355276 137355624 -18274496 - ID_B1 SINE B4 -10 214 1 8 1632 193 329 38 12 chr4 137355679 137355759 -18274361 - L2a LINE L2 -1 3425 3344 8 1632 408 265 0 0 chr4 137356849 137356932 -18273188 - RSINE1 SINE B4 -5 160 78 8 1632 350 203 0 15 chr4 137357005 137357070 -18273050 + B3A SINE B2 97 160 -38 8 1632 346 67 67 0 chr4 137357073 137357148 -18272972 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 1632 615 136 78 0 chr4 137357514 137357617 -18272503 + B2_Mm2 SINE B2 51 161 -34 8 1632 250 169 23 125 chr4 137358143 137358231 -18271889 + B4A SINE B4 213 291 -1 8 1632 785 107 0 8 chr4 137358299 137358422 -18271698 + (GGAA)n Simple_repeat Simple_repeat 2 123 0 8 1632 879 176 0 20 chr4 137358424 137358575 -18271545 + B1_Mur2 SINE Alu 1 148 -1 8 1632 506 47 5 0 chr4 137358586 137358656 -18271464 + B1_Mm SINE Alu 40 112 -8 8 1632 359 234 72 31 chr4 137358656 137358673 -18271447 + RLTR25B LTR ERVK 465 532 -496 8 1632 53 63 0 0 chr4 137358722 137358817 -18271303 + AT_rich Low_complexity Low_complexity 1 95 0 8 1632 214 94 0 0 chr4 137358829 137358861 -18271259 - B3 SINE B2 -184 32 1 8 1632 47 53 0 0 chr4 137358863 137358938 -18271182 + AT_rich Low_complexity Low_complexity 1 75 0 8 1632 234 150 0 0 chr4 137358952 137358992 -18271128 + (GGAA)n Simple_repeat Simple_repeat 4 43 0 8 1632 528 228 114 0 chr4 137359311 137359434 -18270686 + B1F SINE Alu 7 143 -6 8 1632 863 260 22 18 chr4 137359457 137359680 -18270440 + ID_B1 SINE B4 1 224 0 8 1632 868 150 0 22 chr4 137359712 137359848 -18270272 - B1_Mus2 SINE Alu -2 145 13 8 1632 1108 128 21 11 chr4 137359859 137360048 -18270072 - RLTR11A2 LTR ERVK 0 527 337 8 1632 1124 90 14 0 chr4 137360058 137360203 -18269917 - B1_Mus2 SINE Alu 0 147 1 8 1632 1411 80 16 0 chr4 137360205 137360392 -18269728 - B2_Mm2 SINE B2 -4 191 2 8 1632 2120 187 5 29 chr4 137360393 137360773 -18269347 + MTD LTR MaLR 49 419 0 8 1632 627 257 126 35 chr4 137360830 137361028 -18269092 + B3 SINE B2 1 216 0 8 1632 1280 173 110 23 chr4 137361332 137361613 -18268507 + ORR1C1 LTR MaLR 1 314 -56 8 1632 852 98 33 0 chr4 137361613 137361735 -18268385 + B1_Mus1 SINE Alu 2 127 -21 8 1632 873 289 129 13 chr4 137361751 137362130 -18267990 - BGLII_A LTR ERVK -17 428 6 8 1632 425 161 0 75 chr4 137362183 137362277 -18267843 + ORR1C1 LTR MaLR 298 384 0 8 1632 676 287 38 27 chr4 137362285 137362471 -18267649 + ID_B1 SINE B4 24 211 -13 8 1632 204 40 0 0 chr4 137362473 137362498 -18267622 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1632 1409 179 71 51 chr4 137362656 137363042 -18267078 - RMER10A LTR ERVL -12 430 19 8 1632 205 282 154 0 chr4 137363127 137363205 -18266915 + MIR SINE MIR 32 121 -141 8 1633 1491 41 0 93 chr4 137363749 137363905 -18266215 + B2_Mm2 SINE B2 1 154 -41 8 1633 372 43 0 0 chr4 137363905 137363951 -18266169 + (CATA)n Simple_repeat Simple_repeat 2 47 0 8 1633 1491 41 0 93 chr4 137363951 137364009 -18266111 + B2_Mm2 SINE B2 155 195 0 8 1633 282 300 85 15 chr4 137364399 137364583 -18265537 + Lx7 LINE L1 5327 5531 -760 8 1633 897 201 0 0 chr4 137364615 137364764 -18265356 - B1_Mur3 SINE Alu 0 149 1 8 1633 453 127 64 29 chr4 137364896 137365067 -18265053 + (ATATG)n Simple_repeat Simple_repeat 4 180 0 8 1633 244 92 97 48 chr4 137365079 137365182 -18264938 + (ATATG)n Simple_repeat Simple_repeat 3 110 0 8 1633 897 294 59 13 chr4 137365201 137365508 -18264612 + Lx7 LINE L1 5589 5909 -1787 8 1633 897 176 7 0 chr4 137365541 137365689 -18264431 - B1_Mur2 SINE Alu 0 149 1 8 1633 260 271 57 108 chr4 137366405 137366562 -18263558 + MT2B LTR ERVL 146 294 -307 8 1633 520 268 0 39 chr4 137366435 137366563 -18263557 + ID_B1 SINE B4 92 214 -10 8 1633 524 237 7 0 chr4 137366569 137366721 -18263399 + GA-rich Low_complexity Low_complexity 3 155 0 8 1633 1457 73 21 5 chr4 137366730 137366922 -18263198 - B2_Mm2 SINE B2 0 195 1 8 1633 814 219 123 0 chr4 137367633 137367820 -18262300 - ID_B1 SINE B4 -7 217 8 8 1633 982 205 30 5 chr4 137367838 137368039 -18262081 - B3 SINE B2 -10 206 1 8 1633 554 264 71 0 chr4 137368381 137368521 -18261599 + RSINE1 SINE B4 4 153 -12 8 1633 1034 91 6 28 chr4 137368525 137368706 -18261414 + (CATA)n Simple_repeat Simple_repeat 4 180 0 8 1633 601 130 16 16 chr4 137368719 137368844 -18261276 + (CATA)n Simple_repeat Simple_repeat 1 125 0 8 1633 183 42 0 0 chr4 137369290 137369314 -18260806 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1633 401 274 95 7 chr4 137369318 137369465 -18260655 - MER113 DNA MER1_type -120 401 242 8 1633 408 293 98 150 chr4 137370425 137370490 -18259630 - B4 SINE B4 0 292 227 8 1633 180 0 0 0 chr4 137370490 137370510 -18259610 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1633 408 293 98 150 chr4 137370510 137370530 -18259590 - B4 SINE B4 -66 226 215 8 1633 1246 54 0 0 chr4 137370530 137370677 -18259443 + B1_Mus1 SINE Alu 2 148 0 8 1633 408 293 98 150 chr4 137370677 137370783 -18259337 - B4 SINE B4 -78 214 110 8 1633 460 168 289 74 chr4 137370968 137371072 -18259048 + URR1A DNA MER1_type 2 144 -82 8 1633 1292 62 91 0 chr4 137371072 137371229 -18258891 + B2_Mm1a SINE B2 2 159 -34 8 1633 432 0 0 0 chr4 137371229 137371277 -18258843 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 8 1633 1292 62 91 0 chr4 137371277 137371295 -18258825 + B2_Mm1a SINE B2 160 191 -2 8 1633 460 168 289 74 chr4 137371295 137371325 -18258795 + URR1A DNA MER1_type 145 165 -61 8 1633 1140 175 89 134 chr4 137371331 137371667 -18258453 - ORR1A4 LTR MaLR -8 321 1 8 1633 438 123 0 0 chr4 137371667 137371732 -18258388 + URR1A DNA MER1_type 160 224 -2 8 1633 324 324 39 0 chr4 137372082 137372184 -18257936 + ORR1E LTR MaLR 22 127 -232 8 1633 4473 152 37 9 chr4 137372293 137373110 -18257010 + MERVL_2A-int LTR ERVL 4922 5761 0 8 1633 1839 192 152 56 chr4 137373110 137373596 -18256524 + MT2A LTR ERVL 1 533 0 8 1633 953 141 6 50 chr4 137373795 137373946 -18256174 + B2_Mm2 SINE B2 24 173 -22 8 1633 1199 75 0 0 chr4 137373946 137374093 -18256027 - B1_Mus1 SINE Alu 0 148 2 8 1633 953 141 6 50 chr4 137374093 137374120 -18256000 + B2_Mm2 SINE B2 174 194 -1 8 1633 1232 56 0 0 chr4 137374120 137374263 -18255857 + B1_Mus1 SINE Alu 5 147 -1 8 1633 1908 207 124 47 chr4 137374273 137374765 -18255355 + RMER16 LTR ERVK 3 532 -1 8 1633 558 0 0 0 chr4 137374765 137374827 -18255293 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 8 1633 496 139 22 34 chr4 137374929 137375018 -18255102 - B1_Mur3 SINE Alu -1 148 61 8 1633 567 275 57 14 chr4 137374957 137375159 -18254961 + B4A SINE B4 79 288 -4 8 1633 231 329 0 0 chr4 137375172 137375251 -18254869 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 8 1633 189 0 0 0 chr4 137375268 137375289 -18254831 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1633 425 222 22 22 chr4 137375330 137375422 -18254698 - RLTR21 LTR ERVK -1462 110 19 8 1633 1040 297 65 11 chr4 137375471 137375920 -18254200 + L1MC1 LINE L1 5580 6052 -281 8 1633 564 15 0 0 chr4 137376072 137376137 -18253983 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1633 239 242 45 0 chr4 137376141 137376207 -18253913 + L1MC1 LINE L1 6249 6317 -16 8 1633 895 101 0 0 chr4 137376228 137376347 -18253773 + B2_Mm2 SINE B2 1 119 -76 8 1633 223 152 0 0 chr4 137376636 137376669 -18253451 - ID4 SINE ID -37 46 14 8 1633 259 296 0 0 chr4 137376786 137376840 -18253280 + ID_B1 SINE B4 94 147 -77 8 1633 229 213 73 103 chr4 137376790 137376858 -18253262 + B1F SINE Alu 15 80 -69 8 1633 398 196 9 0 chr4 137376860 137376967 -18253153 + GA-rich Low_complexity Low_complexity 1 108 0 8 1633 237 309 112 28 chr4 137376967 137377110 -18253010 - MER34A1 LTR ERV1 -1 586 432 8 1633 1098 92 46 0 chr4 137377356 137377508 -18252612 + B2_Mm2 SINE B2 27 185 -10 8 1633 729 107 146 62 chr4 137377543 137377673 -18252447 - B1_Mus1 SINE Alu -7 141 1 8 1633 30 27 0 0 chr4 137377673 137377710 -18252410 + AT_rich Low_complexity Low_complexity 1 37 0 8 1633 465 19 0 0 chr4 137377808 137377862 -18252258 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1633 1194 206 5 0 chr4 137377931 137378145 -18251975 + B3 SINE B2 1 215 -1 8 1633 650 262 0 0 chr4 137378155 137378281 -18251839 + B1_Mur3 SINE Alu 2 127 -22 8 1633 1173 54 13 26 chr4 137378366 137378517 -18251603 - B1_Mur4 SINE Alu 0 150 2 8 1633 229 281 11 11 chr4 137378720 137378810 -18251310 + L1MB8 LINE L1 4961 5050 -1096 8 1633 606 93 0 0 chr4 137378855 137378941 -18251179 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 9 1633 1178 65 39 0 chr4 137378941 137379095 -18251025 - B2_Mm2 SINE B2 -34 161 2 9 1633 180 0 0 0 chr4 137379105 137379125 -18250995 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 9 1633 268 278 143 0 chr4 137379128 137379261 -18250859 + L1MB8 LINE L1 5097 5248 -898 8 1633 313 282 63 24 chr4 137379369 137379385 -18250735 + B1F1 SINE Alu 7 138 -11 9 1633 482 264 9 9 chr4 137379385 137379496 -18250624 + ID_B1 SINE B4 103 213 -11 9 1633 923 156 256 0 chr4 137379798 137379978 -18250142 + URR1A DNA MER1_type 1 226 0 9 1633 615 193 8 34 chr4 137380000 137380118 -18250002 + PB1D10 SINE Alu 2 116 -1 9 1633 275 279 0 0 chr4 137380149 137380217 -18249903 + L1MB8 LINE L1 5696 5763 -411 8 1633 696 35 0 0 chr4 137380231 137380318 -18249802 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1633 498 273 40 34 chr4 137380368 137380381 -18249739 - B1F1 SINE Alu 0 149 81 9 1633 661 228 0 0 chr4 137380381 137380504 -18249616 - ID_B1 SINE B4 -8 216 94 9 1633 498 273 40 34 chr4 137380504 137380516 -18249604 - B1F1 SINE Alu 0 80 1 9 1633 261 288 134 67 chr4 137380654 137380818 -18249302 + MLT1A1 LTR MaLR 71 245 -120 9 1633 327 197 0 0 chr4 137380843 137380909 -18249211 + MLT1A1 LTR MaLR 343 408 0 9 1633 501 62 0 0 chr4 137381155 137381220 -18248900 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 9 1633 289 246 150 17 chr4 137381421 137381541 -18248579 - RLTR42-int LTR ERVK -4156 1366 1231 9 1633 1411 83 15 20 chr4 137381632 137381828 -18248292 - B2_Mm2 SINE B2 0 195 1 9 1633 336 212 43 45 chr4 137381840 137381940 -18248180 - PB1D9 SINE Alu -25 125 22 9 1633 461 263 10 0 chr4 137381997 137382096 -18248024 - ID_B1 SINE B4 -124 100 1 9 1633 373 243 64 117 chr4 137382121 137382419 -18247701 + L1MB8 LINE L1 5825 6106 -72 8 1633 293 266 135 16 chr4 137382430 137382556 -18247564 + YREP_Mm Unknown Unknown 154 294 -1518 9 1633 633 159 124 0 chr4 137382450 137382563 -18247557 - ID_B1 SINE B4 -1 223 97 9 1633 429 193 30 156 chr4 137382563 137382585 -18247535 - PB1D7 SINE Alu -1 119 2 9 1633 734 269 11 46 chr4 137382623 137382798 -18247322 - B3A SINE B2 0 198 30 9 1633 211 119 58 29 chr4 137382841 137382910 -18247210 + (TTATA)n Simple_repeat Simple_repeat 4 74 0 9 1633 1018 197 81 0 chr4 137383059 137383257 -18246863 + B3 SINE B2 3 216 0 9 1633 637 268 19 38 chr4 137383434 137383647 -18246473 - MER3 DNA MER1_type 0 209 1 9 1633 1228 48 0 0 chr4 137383997 137384142 -18245978 + B1_Mus2 SINE Alu 2 146 -1 9 1633 210 37 0 0 chr4 137384143 137384170 -18245950 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 9 1633 504 122 0 0 chr4 137384261 137384343 -18245777 + (TATG)n Simple_repeat Simple_repeat 2 83 0 9 1633 350 267 0 0 chr4 137384366 137384441 -18245679 - RSINE1 SINE B4 -23 142 68 9 1633 2324 185 60 14 chr4 137384447 137384945 -18245175 + RLTR11A2 LTR ERVK 7 527 0 9 1633 220 296 14 27 chr4 137384945 137385018 -18245102 - RSINE1 SINE B4 -93 72 1 9 1633 2956 136 83 19 chr4 137385329 137385847 -18244273 - RLTR20B3 LTR ERVK -1 576 26 9 1633 207 175 0 0 chr4 137386136 137386176 -18243944 + G-rich Low_complexity Low_complexity 1 40 0 9 1633 1124 86 0 0 chr4 137386176 137386315 -18243805 - B1_Mus1 SINE Alu -9 139 1 9 1633 280 296 142 56 chr4 137386540 137386737 -18243383 - MIRb SINE MIR -26 242 29 9 1633 485 170 29 39 chr4 137386959 137387063 -18243057 - B2_Mm2 SINE B2 -91 104 2 9 1633 859 209 46 36 chr4 137387232 137387426 -18242694 + B3 SINE B2 2 197 -19 9 1633 22 56 0 0 chr4 137387487 137387523 -18242597 + AT_rich Low_complexity Low_complexity 1 36 0 9 1633 459 0 0 0 chr4 137387985 137388036 -18242084 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1633 543 229 94 38 chr4 137388055 137388214 -18241906 - B4A SINE B4 0 292 125 9 1633 1307 21 8 16 chr4 137388253 137388498 -18241622 + (TTCC)n Simple_repeat Simple_repeat 1 243 0 9 1633 471 304 7 0 chr4 137388504 137388639 -18241481 - Lx8 LINE L1 -143 7330 7195 9 1633 445 252 42 35 chr4 137388642 137388786 -18241334 - L1MC3 LINE L1 -923 6862 6718 9 1633 866 179 7 7 chr4 137389258 137389404 -18240716 + B1_Mus1 SINE Alu 3 148 0 9 1633 491 316 0 0 chr4 137389423 137389556 -18240564 + B1_Mur2 SINE Alu 3 135 -14 9 1633 32 26 0 0 chr4 137389558 137389597 -18240523 + AT_rich Low_complexity Low_complexity 1 39 0 9 1633 215 233 0 0 chr4 137389678 137389721 -18240399 + ID4 SINE ID 37 79 -4 9 1633 814 219 96 5 chr4 137389735 137389932 -18240188 + B3 SINE B2 2 216 0 9 1633 261 83 0 0 chr4 137389987 137390023 -18240097 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 9 1633 29 0 0 0 chr4 137390023 137390052 -18240068 + AT_rich Low_complexity Low_complexity 1 29 0 9 1633 616 177 9 9 chr4 137390069 137390183 -18239937 - PB1D9 SINE Alu -1 119 6 9 1633 769 217 0 0 chr4 137390230 137390368 -18239752 - B1_Mur4 SINE Alu -12 138 1 9 1633 180 0 0 0 chr4 137390384 137390404 -18239716 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1633 288 0 0 0 chr4 137390427 137390459 -18239661 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1633 380 354 62 0 chr4 137390462 137390592 -18239528 - RSINE1 SINE B4 -24 141 4 9 1633 1086 153 102 0 chr4 137390617 137390813 -18239307 - B3 SINE B2 0 216 1 9 1633 315 334 80 69 chr4 137390850 137391213 -18238907 - L1MC LINE L1 -2174 3972 3606 9 1633 194 324 27 0 chr4 137391428 137391502 -18238618 + MIR3 SINE MIR 114 189 -19 9 1633 441 0 0 0 chr4 137392289 137392338 -18237782 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1633 248 241 17 0 chr4 137392363 137392421 -18237699 + AluF_3 SINE Alu 154 212 -99 9 1633 530 54 14 0 chr4 137392424 137392498 -18237622 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 9 1633 230 276 0 17 chr4 137392685 137392744 -18237376 + B1F2 SINE Alu 1 58 -91 9 1633 452 173 12 12 chr4 137392746 137392828 -18237292 + ID_B1 SINE B4 109 190 -34 9 1633 1111 82 41 3 chr4 137393141 137393489 -18236631 + (TCTA)n Simple_repeat Simple_repeat 1 361 0 9 1633 637 200 0 0 chr4 137393537 137393647 -18236473 + ID_B1 SINE B4 104 213 -11 9 1633 222 37 0 0 chr4 137393651 137393678 -18236442 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 9 1633 234 91 0 0 chr4 137393742 137393775 -18236345 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 9 1633 3678 28 33 0 chr4 137394291 137394713 -18235407 + RLTR10C LTR ERVK 1 436 0 9 1633 2204 141 147 7 chr4 137394928 137395017 -18235103 - RLTR20A LTR ERVK 0 541 441 9 1633 189 0 0 0 chr4 137395017 137395038 -18235082 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 1633 2204 141 147 7 chr4 137395038 137395383 -18234737 - RLTR20A LTR ERVK -101 440 47 9 1633 199 338 38 0 chr4 137395480 137395560 -18234560 + L2 LINE L2 2863 2945 -474 9 1633 902 200 156 0 chr4 137395989 137396169 -18233951 + B3 SINE B2 4 211 -5 9 1633 899 221 70 5 chr4 137396183 137396397 -18233723 + B4 SINE B4 1 228 -64 9 1633 583 273 134 56 chr4 137396402 137396670 -18233450 + B4A SINE B4 4 292 0 9 1633 724 167 30 0 chr4 137396722 137396890 -18233230 + CT-rich Low_complexity Low_complexity 2 174 0 9 1633 342 0 0 0 chr4 137396886 137396924 -18233196 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 1633 262 363 0 9 chr4 137396924 137396946 -18233174 - BC1_Mm scRNA scRNA -37 115 94 9 1633 805 196 15 0 chr4 137396946 137397079 -18233041 - B1_Mur1 SINE Alu -14 135 1 9 1633 290 334 0 1 chr4 137397079 137397170 -18232950 - ID4 SINE ID -59 93 3 9 1633 621 199 0 0 chr4 137397171 137397302 -18232818 + CT-rich Low_complexity Low_complexity 2 132 0 9 1633 307 260 98 84 chr4 137397302 137397445 -18232675 - B1F SINE Alu 0 149 5 9 1633 1473 0 13 0 chr4 137397750 137397984 -18232136 + (TTC)n Simple_repeat Simple_repeat 1 236 0 9 1633 398 69 17 0 chr4 137397984 137398042 -18232078 + (TCC)n Simple_repeat Simple_repeat 3 61 0 9 1633 1934 109 15 36 chr4 137398048 137398380 -18231740 - Lx4B LINE L1 -1 7057 6733 9 1633 576 0 0 0 chr4 137398382 137398446 -18231674 + (TC)n Simple_repeat Simple_repeat 2 65 0 9 1633 409 174 119 30 chr4 137398446 137398538 -18231582 - B4 SINE B4 -103 189 86 9 1633 897 81 0 0 chr4 137398538 137398661 -18231459 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 9 1633 346 228 76 0 chr4 137398731 137398810 -18231310 - B4 SINE B4 -207 85 1 9 1633 279 79 0 0 chr4 137398851 137398889 -18231231 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1633 537 230 236 0 chr4 137398939 137399100 -18231020 - ID_B1 SINE B4 -2 222 24 9 1633 648 0 0 0 chr4 137399502 137399574 -18230546 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 9 1633 1142 72 0 0 chr4 137399574 137399712 -18230408 - B1_Mus2 SINE Alu -9 138 1 9 1633 365 154 192 0 chr4 137399779 137399857 -18230263 - PB1D10 SINE Alu -7 110 18 9 1633 1189 43 0 0 chr4 137399994 137400134 -18229986 + B1_Mus1 SINE Alu 1 140 -8 9 1633 1115 145 73 0 chr4 137400207 137400386 -18229734 - B2_Mm2 SINE B2 -2 193 2 9 1633 664 171 0 0 chr4 137400453 137400558 -18229562 + B1_Mur1 SINE Alu 9 113 -36 9 1633 289 286 13 0 chr4 137400572 137400649 -18229471 + (CGTG)n Simple_repeat Simple_repeat 1 78 0 9 1633 595 205 66 0 chr4 137400932 137401054 -18229066 - B1_Mur1 SINE Alu -1 148 19 9 1633 272 297 106 86 chr4 137400933 137401068 -18229052 - B4 SINE B4 -69 223 86 9 1633 212 0 0 35 chr4 137401068 137401097 -18229023 + (TTA)n Simple_repeat Simple_repeat 3 30 0 9 1633 272 297 106 86 chr4 137401097 137401112 -18229008 - B4 SINE B4 -207 85 71 9 1633 487 111 24 36 chr4 137401102 137401186 -18228934 - B1_Mus2 SINE Alu 0 147 65 9 1633 347 325 62 16 chr4 137401280 137401408 -18228712 - ID_B1 SINE B4 0 224 91 9 1633 516 275 69 0 chr4 137401645 137401776 -18228344 - RSINE1 SINE B4 -22 143 4 9 1633 570 307 15 19 chr4 137401819 137402025 -18228095 - L1MB5 LINE L1 -284 5890 5686 9 1633 452 259 90 78 chr4 137402044 137402312 -18227808 - L1MB7 LINE L1 -23 6161 5891 9 1633 548 190 124 41 chr4 137402481 137402602 -18227518 - B1_Mur1 SINE Alu -17 132 2 9 1633 49 18 0 0 chr4 137402610 137402666 -18227454 + AT_rich Low_complexity Low_complexity 1 56 0 1 1633 943 141 35 0 chr4 137402666 137402808 -18227312 - B1_Mus1 SINE Alu 0 148 2 1 1633 197 65 32 0 chr4 137402813 137402844 -18227276 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1633 975 132 0 0 chr4 137402845 137402981 -18227139 - B1_Mus1 SINE Alu -12 136 1 1 1633 517 267 0 0 chr4 137402984 137403100 -18227020 - ID_B1 SINE B4 0 224 109 1 1633 1491 64 27 0 chr4 137403918 137404106 -18226014 + B2_Mm2 SINE B2 2 194 -1 1 1633 1925 203 39 11 chr4 137404299 137404663 -18225457 + ORR1D1 LTR MaLR 1 374 0 1 1633 213 305 75 103 chr4 137405000 137405033 -18225087 - B1_Mur2 SINE Alu -6 143 3 1 1633 403 295 98 0 chr4 137405033 137405145 -18224975 - ID_B1 SINE B4 -18 206 84 1 1633 809 84 12 14 chr4 137405308 137405448 -18224672 - B1_Mus2 SINE Alu -1 146 5 1 1633 282 211 70 109 chr4 137405352 137405480 -18224640 - RLTR25B LTR ERVK -519 509 387 1 1633 402 21 0 0 chr4 137405854 137405901 -18224219 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1633 390 195 0 0 chr4 137405903 137405990 -18224130 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1633 1273 269 19 37 chr4 137406011 137406389 -18223731 - MTE2a LTR MaLR -2 377 7 1 1633 528 250 18 0 chr4 137406333 137406445 -18223675 - ID_B1 SINE B4 -16 208 95 1 1633 263 166 46 0 chr4 137406448 137406517 -18223603 + PB1D10 SINE Alu 45 127 0 1 1633 1128 48 0 33 chr4 137406524 137406674 -18223446 + B1_Mm SINE Alu 2 146 -1 1 1633 224 30 30 0 chr4 137406688 137406721 -18223399 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1633 2304 110 3 15 chr4 137406757 137407090 -18223030 - ORR1A4 LTR MaLR 0 329 1 1 1633 601 302 48 24 chr4 137407494 137407701 -18222419 - B3 SINE B2 -3 213 2 1 1633 220 401 126 15 chr4 137407849 137408120 -18222000 - L4 LINE RTE -213 1816 1516 1 1633 468 0 0 0 chr4 137408728 137408780 -18221340 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1633 263 225 0 101 chr4 137408926 137409005 -18221115 + L1MB8 LINE L1 6064 6134 -44 1 1633 345 237 0 0 chr4 137409034 137409110 -18221010 + PB1D10 SINE Alu 41 116 -1 1 1633 661 235 8 0 chr4 137409115 137409247 -18220873 + ID_B1 SINE B4 90 222 -2 1 1633 723 219 29 0 chr4 137409477 137409614 -18220506 - B1F SINE Alu -8 141 1 1 1633 220 345 35 12 chr4 137410328 137410413 -18219707 - MER5B DNA MER1_type -65 113 27 1 1633 192 304 0 0 chr4 137410442 137410488 -18219632 - MIR3 SINE MIR -52 156 111 1 1633 386 217 97 11 chr4 137411201 137411294 -18218826 + PB1D10 SINE Alu 6 106 -11 1 1633 992 79 24 24 chr4 137411294 137411463 -18218657 + (GGAGAA)n Simple_repeat Simple_repeat 3 171 0 1 1633 681 13 0 0 chr4 137411463 137411541 -18218579 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 1 1633 270 0 0 0 chr4 137411642 137411672 -18218448 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1633 477 254 47 8 chr4 137412401 137412528 -18217592 + ID_B1 SINE B4 26 157 -67 1 1633 294 284 34 11 chr4 137412457 137412546 -18217574 + PB1D10 SINE Alu 7 97 -20 1 1633 362 309 71 7 chr4 137412781 137412921 -18217199 + MIRb SINE MIR 93 241 -27 1 1633 802 182 0 21 chr4 137413004 137413144 -18216976 - B1_Mur4 SINE Alu -13 137 1 1 1633 871 235 73 24 chr4 137413144 137413348 -18216772 - B3 SINE B2 0 216 2 1 1633 248 216 20 0 chr4 137413355 137413406 -18216714 - ID_B1 SINE B4 -74 150 99 1 1633 358 234 7 7 chr4 137413913 137414068 -18216052 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1633 287 284 105 118 chr4 137414104 137414135 -18215985 + B4A SINE B4 70 99 -193 1 1633 540 42 0 0 chr4 137414140 137414211 -18215909 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1633 287 284 105 118 chr4 137414211 137414326 -18215794 + B4A SINE B4 100 219 -73 1 1633 329 257 118 9 chr4 137414339 137414449 -18215671 - ID_B1 SINE B4 -13 211 90 1 1633 936 91 0 0 chr4 137414687 137414819 -18215301 + (TC)n Simple_repeat Simple_repeat 2 133 0 1 1633 978 76 264 0 chr4 137414819 137414963 -18215157 - B2_Mm2 SINE B2 -11 184 3 1 1633 621 152 29 0 chr4 137414978 137415083 -18215037 - B1_Mur1 SINE Alu -2 147 40 1 1633 268 241 12 48 chr4 137415013 137415096 -18215024 - RLTR25B LTR ERVK -521 507 428 1 1633 651 128 15 29 chr4 137415096 137415233 -18214887 + CT-rich Low_complexity Low_complexity 2 136 0 1 1633 1289 34 0 0 chr4 137415234 137415381 -18214739 - B1_Mus1 SINE Alu 0 148 2 1 1633 303 235 72 0 chr4 137415542 137415635 -18214485 - MIRb SINE MIR -113 163 65 1 1633 629 237 142 35 chr4 137415741 137415938 -18214182 + ID_B1 SINE B4 5 222 -2 1 1633 180 176 0 0 chr4 137416460 137416494 -18213626 + CT-rich Low_complexity Low_complexity 2 35 0 1 1633 249 157 19 19 chr4 137416641 137416693 -18213427 + B1F2 SINE Alu 5 56 -93 1 1633 775 114 76 0 chr4 137416792 137416924 -18213196 - B1_Mur4 SINE Alu -2 148 7 1 1633 180 0 0 0 chr4 137416933 137416953 -18213167 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1633 720 264 3 84 chr4 137416956 137417172 -18212948 - B3A SINE B2 -13 203 1 1 1633 450 0 0 0 chr4 137417285 137417335 -18212785 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1633 378 0 0 0 chr4 137417634 137417676 -18212444 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1633 1081 86 0 0 chr4 137419490 137419629 -18210491 + B1_Mus1 SINE Alu 1 139 -9 1 1633 240 265 24 12 chr4 137419812 137419896 -18210224 + PB1D10 SINE Alu 1 85 -32 1 1633 531 222 207 17 chr4 137419948 137420122 -18209998 - B3 SINE B2 -1 215 9 1 1633 297 333 51 46 chr4 137420148 137420343 -18209777 + MIRb SINE MIR 24 219 -49 1 1633 241 343 124 14 chr4 137421590 137421787 -18208333 + MIRm SINE MIR 11 230 -38 1 1633 300 254 14 0 chr4 137422439 137422510 -18207610 + B1F2 SINE Alu 1 72 -77 1 1633 214 296 0 0 chr4 137423490 137423544 -18206576 + MIR3 SINE MIR 101 154 -54 1 1633 958 63 0 0 chr4 137424144 137424271 -18205849 - B1_Mus2 SINE Alu -9 138 12 1 1633 548 180 173 119 chr4 137424304 137424506 -18205614 - ID_B1 SINE B4 -10 214 2 1 1633 2612 127 53 78 chr4 137424953 137425395 -18204725 - Lx4A LINE L1 -12 7046 6608 1 1633 948 41 83 0 chr4 137425395 137425516 -18204604 + B1_Mus1 SINE Alu 1 131 -17 1 1633 2612 127 53 78 chr4 137425516 137425586 -18204534 - Lx4A LINE L1 -451 6607 6547 1 1633 189 317 164 27 chr4 137426765 137427063 -18203057 - L2 LINE L2 -337 3082 2744 1 1633 1166 58 0 0 chr4 137427661 137427799 -18202321 + B1_Mus2 SINE Alu 1 138 -9 1 1633 500 259 180 23 chr4 137427818 137428035 -18202085 + B4 SINE B4 30 280 -12 1 1633 239 248 130 28 chr4 137428131 137428239 -18201881 - MIR3 SINE MIR -77 131 13 1 1633 499 323 54 29 chr4 137428441 137428645 -18201475 - B4A SINE B4 -1 291 83 1 1633 237 33 0 0 chr4 137428663 137428693 -18201427 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 1633 649 281 0 14 chr4 137428699 137428847 -18201273 - B3 SINE B2 -30 186 41 1 1633 380 321 34 16 chr4 137429071 137429323 -18200797 - RLTR11B LTR ERVK -8 437 172 1 1633 339 208 16 12 chr4 137429295 137429378 -18200742 + MTE2b LTR MaLR 296 419 0 1 1633 364 351 94 0 chr4 137429504 137429695 -18200425 - MIR SINE MIR -1 261 53 1 1633 904 269 24 0 chr4 137429744 137429952 -18200168 - B3 SINE B2 -2 214 2 1 1633 408 20 0 0 chr4 137430067 137430116 -18200004 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1633 260 342 0 0 chr4 137431328 137431401 -18198719 - MER5A DNA MER1_type -67 122 50 1 1633 861 285 82 8 chr4 137431645 137431900 -18198220 + MTEa LTR MaLR 1 274 -105 1 1633 606 51 0 0 chr4 137431900 137431978 -18198142 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1633 622 173 117 8 chr4 137431990 137432118 -18198002 - B3A SINE B2 -46 152 11 1 1633 1453 59 5 5 chr4 137432379 137432565 -18197555 + B2_Mm1a SINE B2 1 186 -7 1 1633 420 226 0 0 chr4 137432567 137432651 -18197469 + RSINE1 SINE B4 17 100 -65 1 1633 266 0 29 0 chr4 137433546 137433580 -18196540 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 1 1633 198 0 0 0 chr4 137433750 137433772 -18196348 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1633 324 286 36 0 chr4 137434924 137435008 -18195112 - PB1 SINE Alu -16 111 25 1 1633 322 327 52 17 chr4 137435039 137435072 -18195048 - RSINE1 SINE B4 -33 132 95 1 1633 1443 62 17 0 chr4 137435072 137435249 -18194871 - B2_Mm2 SINE B2 -15 180 1 1 1633 322 327 52 17 chr4 137435249 137435330 -18194790 - RSINE1 SINE B4 -71 94 14 1 1633 612 62 0 0 chr4 137435577 137435658 -18194462 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1633 1042 52 81 0 chr4 137436219 137436355 -18193765 + B1_Mm SINE Alu 1 147 0 1 1633 273 119 0 0 chr4 137436355 137436397 -18193723 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1633 234 319 106 0 chr4 137436629 137436742 -18193378 + L2a LINE L2 3106 3230 -196 1 1633 641 208 0 4 chr4 137436742 137437300 -18192820 + (TG)n Simple_repeat Simple_repeat 1 555 0 1 1633 287 261 0 0 chr4 137437310 137437379 -18192741 - ID4_ SINE ID -13 70 2 1 1633 403 307 51 0 chr4 137437383 137437520 -18192600 - B1F1 SINE Alu -1 148 5 1 1633 297 349 54 8 chr4 137437571 137437701 -18192419 + L2a LINE L2 3289 3424 -2 1 1633 563 283 25 25 chr4 137437706 137437869 -18192251 + RSINE1 SINE B4 3 165 0 1 1633 586 210 98 28 chr4 137437906 137438085 -18192035 + B3 SINE B2 1 182 -13 1 1633 1028 202 13 70 chr4 137438085 137438314 -18191806 + B3 SINE B2 1 216 0 1 1633 292 164 0 68 chr4 137438320 137438379 -18191741 + BC1_Mm scRNA scRNA 1 55 -97 1 1633 880 164 0 0 chr4 137438421 137438561 -18191559 + B1_Mur2 SINE Alu 3 142 -7 1 1633 410 297 48 0 chr4 137439311 137439456 -18190664 - L1MC3 LINE L1 -227 7558 7407 1 1633 196 429 9 0 chr4 137439941 137440053 -18190067 + L2b LINE L2 3244 3356 -19 1 1633 259 353 49 57 chr4 137440168 137440503 -18189617 - L2b LINE L2 -206 3169 2838 1 1633 581 293 6 18 chr4 137440503 137440577 -18189543 + ID SINE ID 7 78 -146 1 1633 386 277 35 26 chr4 137440577 137440692 -18189428 + PB1D10 SINE Alu 1 116 -1 1 1633 538 302 35 14 chr4 137441210 137441316 -18188804 - ID_B1 SINE B4 -3 221 112 1 1633 186 43 0 0 chr4 137441316 137441339 -18188781 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1633 1245 55 0 0 chr4 137441339 137441485 -18188635 - B1_Mus1 SINE Alu -2 146 1 1 1633 538 302 35 14 chr4 137441485 137441518 -18188602 - ID_B1 SINE B4 -113 111 79 1 1633 1361 226 69 55 chr4 137442076 137442423 -18187697 + MTEa LTR MaLR 28 379 0 1 1633 218 290 59 10 chr4 137442903 137443004 -18187116 + MIRb SINE MIR 93 198 -70 1 1633 1500 128 5 14 chr4 137443119 137443341 -18186779 - URR1B DNA MER1_type -1 224 5 1 1633 323 338 45 8 chr4 137443451 137443585 -18186535 + MIRb SINE MIR 86 224 -44 1 1633 426 229 62 0 chr4 137444396 137444506 -18185614 - MLT1A1 LTR MaLR -14 394 248 1 1633 594 140 0 0 chr4 137444584 137444677 -18185443 - B1_Mur4 SINE Alu -51 99 7 1 1633 325 179 31 125 chr4 137444597 137444693 -18185427 - MT2B LTR ERVL -361 240 154 1 1633 338 316 37 55 chr4 137444693 137444857 -18185263 - MLT1A1 LTR MaLR -213 161 1 1 1633 286 275 66 0 chr4 137445377 137445468 -18184652 + PB1D7 SINE Alu 24 120 0 1 1633 570 29 0 0 chr4 137446478 137446546 -18183574 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1633 220 245 0 15 chr4 137448094 137448163 -18181957 + MIR SINE MIR 60 125 -143 1 1633 387 0 0 0 chr4 137449234 137449277 -18180843 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1633 342 0 0 0 chr4 137449297 137449335 -18180785 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1633 236 318 35 0 chr4 137449335 137449420 -18180700 - L1_Rod LINE L1 -3798 2049 1962 1 1633 708 54 0 0 chr4 137449424 137449517 -18180603 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1 1633 6526 125 8 29 chr4 137449519 137450429 -18179691 - Lx LINE L1 -12 6642 5754 1 1633 1483 82 0 20 chr4 137450429 137450628 -18179492 - B2_Mm2 SINE B2 0 195 1 1 1633 6526 125 8 29 chr4 137450628 137450761 -18179359 - Lx LINE L1 -901 5753 5621 1 1633 1667 36 0 0 chr4 137450762 137450954 -18179166 - B2_Mm1a SINE B2 0 193 2 1 1633 681 227 18 35 chr4 137450994 137451073 -18179047 + ID SINE ID 3 78 -146 1 1633 310 235 91 73 chr4 137451073 137451183 -18178937 + PB1D10 SINE Alu 4 115 -2 1 1633 181 75 50 0 chr4 137451234 137451274 -18178846 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1633 213 328 59 42 chr4 137451335 137451453 -18178667 - MIR SINE MIR -142 120 1 1 1633 235 347 18 80 chr4 137452407 137452570 -18177550 + MLT1K LTR MaLR 436 588 -7 1 1633 291 342 78 29 chr4 137452734 137452939 -18177181 - MIR SINE MIR -33 229 15 1 1633 193 246 62 33 chr4 137453512 137453589 -18176531 - MIRc SINE MIR -111 165 84 1 1633 841 178 173 27 chr4 137454234 137454419 -18175701 + B3 SINE B2 3 214 -2 1 1633 180 392 48 0 chr4 137454866 137454991 -18175129 - MIRb SINE MIR -73 195 65 1 1633 492 289 98 31 chr4 137455535 137455760 -18174360 + MIR SINE MIR 12 251 -11 1 1633 359 69 35 0 chr4 137455896 137455954 -18174166 + (TGAA)n Simple_repeat Simple_repeat 4 63 0 1 1633 247 179 0 56 chr4 137456700 137456720 -18173400 + A-rich Low_complexity Low_complexity 1 17 0 1 1633 1231 48 0 13 chr4 137456720 137456869 -18173251 + B1_Mus1 SINE Alu 2 148 0 1 1633 247 179 0 56 chr4 137456869 137456919 -18173201 + A-rich Low_complexity Low_complexity 18 67 0 1 1633 896 110 0 75 chr4 137456920 137457067 -18173053 + B1_Mur3 SINE Alu 1 136 -13 1 1633 207 0 0 0 chr4 137457070 137457093 -18173027 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1633 1384 75 46 0 chr4 137457125 137457299 -18172821 + B2_Mm2 SINE B2 5 186 -9 1 1633 499 202 264 6 chr4 137457300 137457474 -18172646 - ID_B1 SINE B4 -5 219 1 1 1633 296 289 139 36 chr4 137457768 137457962 -18172158 - L1ME2 LINE L1 -12 6152 5939 1 1633 234 321 113 116 chr4 137457981 137458291 -18171829 - Charlie8 DNA MER1_type -2035 393 85 1 1633 245 348 135 12 chr4 137458410 137458573 -18171547 - MIR SINE MIR -68 194 12 1 1633 182 0 0 97 chr4 137459090 137459121 -18170999 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 1633 933 175 0 0 chr4 137459357 137459500 -18170620 - B1_Mm SINE Alu -2 145 3 1 1633 268 256 38 25 chr4 137459708 137459788 -18170332 + MIRb SINE MIR 107 187 -81 1 1633 344 211 21 43 chr4 137459945 137460039 -18170081 - ID_B1 SINE B4 0 224 133 1 1633 300 245 64 28 chr4 137460039 137460054 -18170066 - B1F SINE Alu 0 149 37 1 1633 944 172 6 17 chr4 137460100 137460277 -18169843 - B3 SINE B2 -6 210 36 1 1633 773 43 0 41 chr4 137460293 137460415 -18169705 + (TCCCC)n Simple_repeat Simple_repeat 5 121 0 1 1633 567 284 77 19 chr4 137460438 137460646 -18169474 - ID_B1 SINE B4 -4 220 1 1 1633 285 252 108 8 chr4 137460781 137460901 -18169219 + MIRc SINE MIR 64 195 -73 1 1633 1243 28 14 0 chr4 137462729 137462873 -18167247 + B1_Mm SINE Alu 2 147 0 1 1633 487 43 29 0 chr4 137463482 137463552 -18166568 + (TTA)n Simple_repeat Simple_repeat 1 72 0 1 1633 480 277 22 28 chr4 137463737 137463816 -18166304 - MIR SINE MIR -22 240 161 1 1633 204 40 0 0 chr4 137463816 137463841 -18166279 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 1 1633 480 280 25 26 chr4 137463841 137463959 -18166161 - MIR SINE MIR -98 170 49 1 1633 206 278 26 53 chr4 137464761 137464837 -18165283 + MIRb SINE MIR 25 98 -170 1 1633 1710 26 0 5 chr4 137465822 137466016 -18164104 + B2_Mm1t SINE B2 1 193 0 1 1633 186 43 0 0 chr4 137466077 137466100 -18164020 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1633 820 255 125 0 chr4 137466132 137466324 -18163796 + B3 SINE B2 1 216 0 1 1633 933 106 55 21 chr4 137466346 137466491 -18163629 - B1_Mur4 SINE Alu 0 150 1 1 1633 1226 54 0 0 chr4 137466508 137466655 -18163465 - B1_Mus1 SINE Alu 0 148 2 1 1633 433 235 17 11 chr4 137466682 137466842 -18163278 - B3 SINE B2 -25 191 1 1 1633 570 214 0 26 chr4 137467157 137467272 -18162848 + PB1D10 SINE Alu 5 116 -1 1 1633 272 312 61 61 chr4 137467349 137467513 -18162607 - L2b LINE L2 -226 3149 2986 1 1633 729 258 6 0 chr4 137467885 137468048 -18162072 + B3 SINE B2 4 167 -49 1 1633 222 91 0 0 chr4 137468050 137468083 -18162037 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1633 487 198 83 28 chr4 137468453 137468562 -18161558 - PB1D9 SINE Alu -1 119 5 1 1633 228 135 0 0 chr4 137468571 137468608 -18161512 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1633 1167 68 7 0 chr4 137468608 137468754 -18161366 - B1_Mus2 SINE Alu 0 147 1 1 1633 533 292 11 80 chr4 137468784 137468959 -18161161 - RSINE1 SINE B4 0 165 3 1 1633 254 229 24 0 chr4 137470845 137470928 -18159192 + (TCTCTG)n Simple_repeat Simple_repeat 6 90 0 1 1633 262 115 19 19 chr4 137471308 137471361 -18158759 + CT-rich Low_complexity Low_complexity 1 53 0 1 1633 233 294 0 14 chr4 137471583 137471652 -18158468 + BC1_Mm scRNA scRNA 1 68 -84 1 1633 540 212 0 0 chr4 137471658 137471790 -18158330 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1633 204 216 0 0 chr4 137471856 137471907 -18158213 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1633 417 86 0 0 chr4 137471971 137472029 -18158091 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1633 761 253 18 0 chr4 137472171 137472341 -18157779 - ID_B1 SINE B4 -1 223 51 1 1633 213 167 23 23 chr4 137472313 137472356 -18157764 - ID2 SINE ID -6 77 35 1 1633 210 236 0 0 chr4 137472584 137472639 -18157481 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1633 234 0 0 0 chr4 137472760 137472786 -18157334 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 1 1633 1348 93 44 0 chr4 137472888 137473071 -18157049 - B2_Mm2 SINE B2 -4 191 1 1 1633 204 287 11 33 chr4 137473926 137474016 -18156104 + CT-rich Low_complexity Low_complexity 4 91 0 1 1633 323 333 8 23 chr4 137477267 137477284 -18152836 + ID_B1 SINE B4 78 199 -20 1 1633 375 264 28 9 chr4 137477284 137477391 -18152729 + B1F SINE Alu 13 121 -28 1 1633 186 103 0 0 chr4 137477441 137477470 -18152650 + (TTC)n Simple_repeat Simple_repeat 3 31 0 1 1633 245 204 0 18 chr4 137478680 137478735 -18151385 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1633 471 182 0 0 chr4 137478978 137479055 -18151065 + RSINE1 SINE B4 2 78 -87 1 1633 245 361 36 43 chr4 137479055 137479117 -18151003 + B3 SINE B2 1 138 -78 1 1633 997 211 39 5 chr4 137479503 137479708 -18150412 - B3 SINE B2 0 216 5 1 1633 694 274 42 33 chr4 137479751 137479966 -18150154 - B4 SINE B4 -10 282 66 1 1633 517 232 0 26 chr4 137480027 137480142 -18149978 + RSINE1 SINE B4 3 114 -51 1 1633 287 113 16 0 chr4 137480146 137480208 -18149912 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1633 228 246 18 0 chr4 137480402 137480459 -18149661 - L2b LINE L2 0 3375 3318 1 1633 239 178 55 0 chr4 137480761 137480834 -18149286 + (GTTTG)n Simple_repeat Simple_repeat 3 79 0 1 1633 698 98 97 16 chr4 137480870 137480994 -18149126 - B1_Mur4 SINE Alu -8 142 9 1 1633 340 203 12 48 chr4 137481296 137481379 -18148741 + ID4 SINE ID 3 82 -1 1 1633 707 214 181 0 chr4 137481446 137481628 -18148492 - ID_B1 SINE B4 -8 216 2 1 1633 278 303 0 0 chr4 137481632 137481723 -18148397 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1633 303 28 0 0 chr4 137481754 137481790 -18148330 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1633 207 0 0 0 chr4 137481791 137481814 -18148306 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1633 734 211 182 6 chr4 137482643 137482819 -18147301 + ID_B1 SINE B4 2 208 -16 1 1633 762 43 0 0 chr4 137482819 137482913 -18147207 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 1633 521 241 9 26 chr4 137483331 137483446 -18146674 - PB1D9 SINE Alu -7 113 1 1 1633 198 0 0 0 chr4 137484666 137484688 -18145432 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1633 851 75 0 8 chr4 137485054 137485175 -18144945 + (TTCC)n Simple_repeat Simple_repeat 4 123 0 1 1633 344 286 30 30 chr4 137485177 137485278 -18144842 - ID_B1 SINE B4 -18 206 106 1 1633 279 313 52 9 chr4 137485278 137485293 -18144827 - B1F SINE Alu -18 131 11 1 1633 500 311 60 16 chr4 137485713 137485896 -18144224 - B4A SINE B4 -24 268 78 1 1633 769 151 21 21 chr4 137485948 137486090 -18144030 - B1_Mus1 SINE Alu -1 147 6 1 1633 346 291 36 108 chr4 137485949 137486115 -18144005 - B4 SINE B4 -69 223 70 1 1633 612 271 7 0 chr4 137486187 137486331 -18143789 + ID_B1 SINE B4 77 221 -3 1 1633 260 229 71 0 chr4 137486405 137486475 -18143645 + ID_B1 SINE B4 24 98 -126 1 1633 378 0 0 0 chr4 137486702 137486744 -18143376 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1633 266 155 0 33 chr4 137487820 137487870 -18142250 + CT-rich Low_complexity Low_complexity 10 58 0 1 1633 1138 48 0 98 chr4 137487870 137488033 -18142087 - B1_Mus2 SINE Alu 0 147 1 1 1633 201 74 0 0 chr4 137488209 137488236 -18141884 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1633 1197 241 17 53 chr4 137488315 137488617 -18141503 - B4A SINE B4 0 292 2 1 1633 322 153 39 65 chr4 137488887 137488964 -18141156 - RLTR28B LTR ERVL -14 510 436 1 1633 198 91 0 0 chr4 137489063 137489096 -18141024 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1633 585 179 177 13 chr4 137489160 137489318 -18140802 - RLTR28B LTR ERVL -297 184 1 1 1633 783 37 0 9 chr4 137489582 137489690 -18140430 - B1_Mus2 SINE Alu 0 147 41 1 1633 303 127 0 18 chr4 137489641 137489697 -18140423 - 4.5SRNA scRNA scRNA -8 86 32 1 1633 930 70 7 7 chr4 137489705 137489849 -18140271 - B2_Mm1t SINE B2 -1 192 49 1 1633 1213 59 147 0 chr4 137489852 137490022 -18140098 - B2_Mm2 SINE B2 0 195 1 1 1633 1815 131 92 7 chr4 137490057 137490341 -18139779 - RLTR10E LTR ERVK -3 308 1 1 1633 2428 81 99 5 chr4 137490616 137490989 -18139131 - MTC LTR MaLR -4 417 10 1 1633 212 0 0 35 chr4 137491424 137491453 -18138667 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 1 1633 708 265 58 54 chr4 137491739 137491750 -18138370 - ID_B1 SINE B4 0 224 214 1 1633 477 0 0 0 chr4 137491750 137491803 -18138317 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1633 708 265 58 54 chr4 137491803 137491821 -18138299 - ID_B1 SINE B4 -11 213 202 1 1633 2486 78 12 3 chr4 137491821 137492141 -18137979 - ORR1A2 LTR MaLR -4 323 1 1 1633 708 265 58 54 chr4 137492141 137492333 -18137787 - ID_B1 SINE B4 -23 201 1 1 1633 378 0 0 0 chr4 137492506 137492548 -18137572 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1633 295 330 0 10 chr4 137492847 137492950 -18137170 + MIRb SINE MIR 67 168 -100 1 1633 219 216 20 0 chr4 137493621 137493672 -18136448 - MIRc SINE MIR -142 126 75 1 1633 315 239 0 15 chr4 137493920 137493988 -18136132 + RSINE1 SINE B4 3 69 -96 1 1633 378 0 0 0 chr4 137493988 137494030 -18136090 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1633 224 274 11 45 chr4 137494030 137494049 -18136071 + B4A SINE B4 70 86 -206 1 1633 490 257 0 0 chr4 137494214 137494319 -18135801 + PB1D10 SINE Alu 13 117 0 1 1633 216 262 234 16 chr4 137494319 137494337 -18135783 + B4A SINE B4 100 250 -42 1 1633 380 175 12 48 chr4 137494341 137494425 -18135695 + PB1D9 SINE Alu 40 120 0 1 1634 1001 223 8 68 chr4 137495125 137495361 -18134759 - ID_B1 SINE B4 0 224 3 1 1634 236 292 0 107 chr4 137496506 137496632 -18133488 + MIRb SINE MIR 18 136 -132 1 1634 302 250 11 91 chr4 137497009 137497117 -18133003 - BC1_Mm scRNA scRNA -51 101 2 1 1634 673 263 14 63 chr4 137497138 137497345 -18132775 - B3A SINE B2 0 198 2 1 1634 355 236 36 0 chr4 137497388 137497480 -18132640 - B1_Mus1 SINE Alu -43 106 1 1 1634 258 250 0 35 chr4 137497503 137497590 -18132530 + C-rich Low_complexity Low_complexity 3 86 0 1 1634 1127 264 66 23 chr4 137497594 137497943 -18132177 - Lx8 LINE L1 -63 7410 7047 1 1634 354 238 35 12 chr4 137498019 137498104 -18132016 - PB1D10 SINE Alu -1 116 30 1 1634 251 235 206 0 chr4 137499077 137499145 -18130975 + ID4_ SINE ID 1 82 -1 1 1634 367 300 0 0 chr4 137499541 137499641 -18130479 - Tigger9a DNA Tigger -33 699 600 1 1634 273 202 0 0 chr4 137499641 137499694 -18130426 + L1MB3 LINE L1 5856 5908 -272 1 1634 213 366 12 0 chr4 137499702 137499716 -18130404 + ID4 SINE ID 1 50 -33 1 1634 236 262 33 0 chr4 137499716 137499777 -18130343 + tRNA-Phe-TTY tRNA tRNA 9 71 -5 1 1634 302 231 88 7 chr4 137500000 137500105 -18130015 + PB1D9 SINE Alu 19 120 0 1 1634 765 113 0 9 chr4 137500397 137500513 -18129607 - B1_Mur1 SINE Alu -1 148 34 2 1634 284 173 62 62 chr4 137500453 137500533 -18129587 - 4.5SRNA scRNA scRNA -6 88 9 3 1634 611 268 0 50 chr4 137500554 137500715 -18129405 - B3A SINE B2 0 198 46 4 1634 980 139 84 34 chr4 137501429 137501607 -18128513 + B2_Mm2 SINE B2 1 187 -8 5 1634 432 0 0 0 chr4 137502650 137502698 -18127422 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1634 518 202 70 9 chr4 137502699 137502814 -18127306 - RSINE1 SINE B4 -41 124 3 7 1634 299 71 0 0 chr4 137502814 137502856 -18127264 - ID_B1 SINE B4 -3 221 180 8 1634 241 191 45 45 chr4 137502856 137502880 -18127240 - PB1 SINE Alu -2 125 60 9 1634 744 159 83 0 chr4 137502913 137503045 -18127075 + B1_Mur4 SINE Alu 7 149 -1 1 1634 376 259 100 73 chr4 137502916 137503066 -18127054 + B4A SINE B4 94 247 -45 1 1634 596 240 26 40 chr4 137503658 137503670 -18126450 - ID_B1 SINE B4 0 224 215 1 1634 504 0 0 0 chr4 137503670 137503726 -18126394 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1634 596 240 26 40 chr4 137503726 137503865 -18126255 - ID_B1 SINE B4 -10 214 75 1 1634 804 179 22 0 chr4 137503887 137504021 -18126099 - B1_Mur1 SINE Alu -11 138 2 1 1634 310 214 86 0 chr4 137504034 137504104 -18126016 - ID4_ SINE ID -3 80 5 1 1634 355 293 0 0 chr4 137504194 137504276 -18125844 - ID4_ SINE ID 0 83 2 1 1634 375 181 0 0 chr4 137504591 137504663 -18125457 - ID SINE ID -149 75 4 1 1634 469 311 7 36 chr4 137506446 137506577 -18123543 + ID_B1 SINE B4 82 211 -13 1 1634 252 0 0 0 chr4 137506577 137506605 -18123515 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1634 938 161 56 22 chr4 137506625 137506803 -18123317 + B2_Mm2 SINE B2 5 188 -7 1 1634 1244 34 0 7 chr4 137506964 137507111 -18123009 + B1_Mus1 SINE Alu 1 146 -2 2 1634 1221 50 0 0 chr4 137507230 137507371 -18122749 - B1_Mus2 SINE Alu -5 142 2 2 1634 306 274 12 12 chr4 137508016 137508101 -18122019 + ID SINE ID 1 85 -139 2 1634 409 254 42 34 chr4 137508160 137508278 -18121842 - PB1 SINE Alu -8 119 1 2 1634 641 258 25 13 chr4 137508369 137508526 -18121594 + B4A SINE B4 132 290 -2 2 1634 884 59 0 8 chr4 137508584 137508704 -18121416 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 2 1634 256 287 12 54 chr4 137508713 137508824 -18121296 + ID4 SINE ID 4 109 -43 2 1634 389 51 34 0 chr4 137509052 137509111 -18121009 + (TATG)n Simple_repeat Simple_repeat 4 64 0 2 1634 293 140 0 0 chr4 137509127 137509177 -18120943 - B2_Mm2 SINE B2 -94 101 52 2 1634 690 150 0 0 chr4 137509178 137509291 -18120829 - B2_Mm2 SINE B2 -81 114 2 2 1634 213 94 0 0 chr4 137509294 137509326 -18120794 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 3 1634 219 139 0 0 chr4 137509476 137509512 -18120608 + (TTC)n Simple_repeat Simple_repeat 1 36 0 3 1634 272 77 0 0 chr4 137509686 137509725 -18120395 + RMER17C LTR ERVK 6 44 -366 3 1634 864 207 11 17 chr4 137509737 137509914 -18120206 - B3 SINE B2 -10 206 31 3 1634 622 162 43 14 chr4 137509919 137510057 -18120063 + B1_Mus1 SINE Alu 7 148 0 3 1634 250 86 0 0 chr4 137510079 137510114 -18120006 - B3 SINE B2 -181 35 1 3 1634 439 298 71 0 chr4 137510257 137510398 -18119722 - Charlie1a DNA MER1_type -274 1181 1031 3 1634 926 169 0 13 chr4 137510415 137510565 -18119555 - B1_Mur2 SINE Alu 0 149 2 3 1634 25 0 0 0 chr4 137510625 137510650 -18119470 + AT_rich Low_complexity Low_complexity 1 25 0 3 1634 745 173 30 8 chr4 137510650 137510784 -18119336 + B1_Mur4 SINE Alu 1 137 -13 3 1634 923 229 54 19 chr4 137510820 137511025 -18119095 - B3 SINE B2 -3 213 2 4 1634 315 371 30 8 chr4 137511039 137511172 -18118948 - Charlie1a DNA MER1_type -820 635 500 3 1634 329 275 152 13 chr4 137511371 137511522 -18118598 - B4A SINE B4 0 292 121 4 1634 186 43 0 0 chr4 137511560 137511583 -18118537 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 1634 433 261 0 0 chr4 137511607 137511699 -18118421 - ID_B1 SINE B4 -10 214 123 4 1634 989 136 7 0 chr4 137511704 137511851 -18118269 - B1_Mus1 SINE Alu 0 148 1 4 1634 271 298 47 102 chr4 137511851 137511880 -18118240 - B1F SINE Alu -103 46 20 4 1634 513 224 80 20 chr4 137511997 137512147 -18117973 - ID_B1 SINE B4 -65 159 1 4 1634 675 155 144 23 chr4 137512158 137512290 -18117830 - B1_Mur3 SINE Alu -1 148 1 4 1634 1415 91 0 5 chr4 137513613 137513800 -18116320 + B2_Mm2 SINE B2 1 186 -9 4 1634 402 115 0 0 chr4 137514382 137514443 -18115677 + (T)n Simple_repeat Simple_repeat 1 61 0 4 1634 1190 75 0 0 chr4 137514447 137514593 -18115527 - B1_Mus2 SINE Alu 0 147 2 5 1634 207 0 0 0 chr4 137514656 137514679 -18115441 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1634 962 257 18 0 chr4 137514686 137514904 -18115216 - ORR1E LTR MaLR -137 222 1 5 1634 198 217 43 0 chr4 137515234 137515280 -18114840 - MIRb SINE MIR -102 166 119 5 1634 331 258 0 0 chr4 137515579 137515645 -18114475 + RMER30 DNA MER1_type 14 79 -123 5 1634 545 212 62 100 chr4 137515660 137515870 -18114250 + B3 SINE B2 14 215 -1 5 1634 1078 166 42 21 chr4 137515873 137516064 -18114056 + B2_Mm2 SINE B2 1 195 0 5 1634 228 297 0 15 chr4 137516078 137516143 -18113977 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 5 1634 197 339 59 8 chr4 137516329 137516448 -18113672 - L2b LINE L2 -285 3090 2966 5 1634 520 165 11 0 chr4 137516554 137516645 -18113475 + B3 SINE B2 3 94 -122 5 1634 230 375 80 51 chr4 137517079 137517173 -18112947 - L2b LINE L2 -842 2577 2494 5 1634 599 0 14 0 chr4 137517173 137517244 -18112876 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1634 230 375 80 51 chr4 137517244 137517424 -18112696 - L2b LINE L2 -926 2493 2296 5 1634 1263 161 27 31 chr4 137517790 137518015 -18112105 + URR1B DNA MER1_type 2 225 0 6 1634 608 210 20 20 chr4 137518073 137518219 -18111901 + B3 SINE B2 4 149 -67 6 1634 180 0 0 0 chr4 137519725 137519745 -18110375 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1634 567 0 0 0 chr4 137520473 137520536 -18109584 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1634 321 225 0 0 chr4 137521356 137521445 -18108675 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1634 1480 179 43 132 chr4 137521548 137522084 -18108036 + BGLII_B LTR ERVK 14 435 -6 6 1634 278 259 28 27 chr4 137522143 137522259 -18107861 + L2b LINE L2 3058 3167 -208 6 1634 553 263 27 81 chr4 137522285 137522471 -18107649 - MLT1C LTR MaLR 0 467 292 6 1634 1477 54 49 0 chr4 137522925 137523109 -18107011 - B2_Mm2 SINE B2 -1 194 2 6 1634 261 344 45 38 chr4 137523517 137523674 -18106446 + YREP_Mm Unknown Unknown 151 308 -1504 7 1634 943 204 22 0 chr4 137523538 137523719 -18106401 - ID_B1 SINE B4 0 224 40 7 1634 251 289 31 109 chr4 137523958 137524086 -18106034 - MT2B LTR ERVL -285 316 199 7 1634 490 209 61 10 chr4 137523987 137524115 -18106005 - B1_Mur2 SINE Alu -5 144 13 7 1634 1159 75 0 7 chr4 137524455 137524591 -18105529 + B1_Mus2 SINE Alu 2 137 -10 7 1634 810 0 0 0 chr4 137524591 137524681 -18105439 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 7 1634 1176 87 17 0 chr4 137524708 137524881 -18105239 + B2_Mm2 SINE B2 20 195 0 7 1634 519 259 0 0 chr4 137524909 137525021 -18105099 - B1F SINE Alu -18 131 20 7 1634 392 273 32 40 chr4 137524914 137525040 -18105080 - ID_B1 SINE B4 -21 203 79 7 1634 600 252 0 0 chr4 137525060 137525187 -18104933 - ID_B1 SINE B4 -1 223 97 7 1634 284 127 18 0 chr4 137525189 137525244 -18104876 + (TA)n Simple_repeat Simple_repeat 1 56 0 8 1634 28 79 0 0 chr4 137525246 137525309 -18104811 + AT_rich Low_complexity Low_complexity 1 63 0 8 1634 1314 142 11 3 chr4 137525351 137525577 -18104543 - MTC LTR MaLR -8 413 196 8 1634 912 100 0 0 chr4 137525618 137525748 -18104372 - B1_Mus2 SINE Alu -5 142 13 8 1634 838 112 0 0 chr4 137525788 137525913 -18104207 + B1_Mus1 SINE Alu 2 126 -22 8 1634 234 0 0 0 chr4 137525914 137525940 -18104180 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1634 381 182 137 60 chr4 137525941 137526058 -18104062 - PB1D10 SINE Alu -22 127 2 8 1634 257 0 0 29 chr4 137526096 137526130 -18103990 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1634 378 0 0 0 chr4 137526208 137526250 -18103870 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1634 894 118 0 0 chr4 137526259 137526394 -18103726 - B1_Mus2 SINE Alu -5 142 8 8 1634 438 241 40 101 chr4 137526261 137526409 -18103711 - B4 SINE B4 -73 219 81 9 1634 321 47 0 0 chr4 137526649 137526692 -18103428 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1634 193 314 88 57 chr4 137527220 137527356 -18102764 - MIR SINE MIR -95 173 19 9 1634 1314 91 0 22 chr4 137527386 137527566 -18102554 - B2_Mm2 SINE B2 -18 177 2 9 1634 333 189 28 4 chr4 137527576 137527647 -18102473 - B1_Mus2 SINE Alu -6 141 46 9 1634 1091 63 0 34 chr4 137527647 137527794 -18102326 + B1_Mus2 SINE Alu 5 146 -1 9 1634 256 372 0 26 chr4 137527794 137527838 -18102282 - PB1D9 SINE Alu -75 45 2 9 1634 635 146 211 0 chr4 137527844 137527967 -18102153 - B1_Mur2 SINE Alu 0 149 1 9 1634 541 290 74 32 chr4 137527970 137528159 -18101961 - B3A SINE B2 -1 197 1 9 1634 520 307 151 18 chr4 137528187 137528406 -18101714 + B4 SINE B4 16 263 -29 9 1634 231 213 0 21 chr4 137528874 137528922 -18101198 - tRNA-Ala-GCY_ tRNA tRNA -21 54 8 9 1634 210 318 121 0 chr4 137529021 137529087 -18101033 - MIRb SINE MIR -194 74 1 1 1634 887 174 7 0 chr4 137529200 137529344 -18100776 - B1_Mur2 SINE Alu -2 147 3 1 1634 528 254 20 40 chr4 137529913 137530061 -18100059 + ID_B1 SINE B4 79 223 -1 1 1634 224 241 37 0 chr4 137530068 137530122 -18099998 + ID SINE ID 2 57 -167 1 1634 378 187 51 77 chr4 137530145 137530298 -18099822 - PB1D10 SINE Alu -3 146 2 1 1634 257 0 0 29 chr4 137530336 137530370 -18099750 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1634 288 0 0 0 chr4 137530448 137530480 -18099640 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1634 894 118 0 0 chr4 137530489 137530624 -18099496 - B1_Mus2 SINE Alu -5 142 8 1 1634 438 241 40 101 chr4 137530491 137530639 -18099481 - B4 SINE B4 -73 219 81 1 1634 321 47 0 0 chr4 137530879 137530922 -18099198 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1634 193 314 88 57 chr4 137531450 137531586 -18098534 - MIR SINE MIR -95 173 19 1 1634 1314 91 0 22 chr4 137531616 137531796 -18098324 - B2_Mm2 SINE B2 -18 177 2 1 1634 333 189 28 4 chr4 137531806 137531877 -18098243 - B1_Mus2 SINE Alu -6 141 46 1 1634 1091 63 0 34 chr4 137531877 137532024 -18098096 + B1_Mus2 SINE Alu 5 146 -1 1 1634 256 372 0 26 chr4 137532024 137532068 -18098052 - PB1D9 SINE Alu -75 45 2 1 1634 635 146 211 0 chr4 137532074 137532197 -18097923 - B1_Mur2 SINE Alu 0 149 1 1 1634 541 290 74 32 chr4 137532200 137532389 -18097731 - B3A SINE B2 -1 197 1 1 1634 520 307 151 18 chr4 137532417 137532636 -18097484 + B4 SINE B4 16 263 -29 1 1634 231 213 0 21 chr4 137533104 137533152 -18096968 - tRNA-Ala-GCY_ tRNA tRNA -21 54 8 1 1634 210 318 121 0 chr4 137533251 137533317 -18096803 - MIRb SINE MIR -194 74 1 1 1634 887 174 7 0 chr4 137533430 137533574 -18096546 - B1_Mur2 SINE Alu -2 147 3 1 1634 528 254 20 40 chr4 137534143 137534291 -18095829 + ID_B1 SINE B4 79 223 -1 1 1634 224 241 37 0 chr4 137534298 137534352 -18095768 + ID SINE ID 2 57 -167 1 1634 378 187 51 77 chr4 137534375 137534528 -18095592 - PB1D10 SINE Alu -3 146 2 1 1634 257 0 0 29 chr4 137534566 137534600 -18095520 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1634 288 0 0 0 chr4 137534678 137534710 -18095410 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1634 894 118 0 0 chr4 137534719 137534854 -18095266 - B1_Mus2 SINE Alu -5 142 8 1 1634 438 241 40 101 chr4 137534721 137534869 -18095251 - B4 SINE B4 -73 219 81 1 1634 321 47 0 0 chr4 137535109 137535152 -18094968 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1634 193 314 88 57 chr4 137535680 137535816 -18094304 - MIR SINE MIR -95 173 19 1 1634 1314 91 0 22 chr4 137535846 137536026 -18094094 - B2_Mm2 SINE B2 -18 177 2 1 1634 333 189 28 4 chr4 137536036 137536107 -18094013 - B1_Mus2 SINE Alu -6 141 46 1 1634 1091 63 0 34 chr4 137536107 137536254 -18093866 + B1_Mus2 SINE Alu 5 146 -1 1 1634 256 372 0 26 chr4 137536254 137536298 -18093822 - PB1D9 SINE Alu -75 45 2 1 1634 635 146 211 0 chr4 137536304 137536427 -18093693 - B1_Mur2 SINE Alu 0 149 1 1 1634 541 290 74 32 chr4 137536430 137536619 -18093501 - B3A SINE B2 -1 197 1 1 1634 520 307 151 18 chr4 137536647 137536866 -18093254 + B4 SINE B4 16 263 -29 1 1634 231 213 0 21 chr4 137537334 137537382 -18092738 - tRNA-Ala-GCY_ tRNA tRNA -21 54 8 1 1634 210 318 121 0 chr4 137537481 137537547 -18092573 - MIRb SINE MIR -194 74 1 1 1634 887 174 7 0 chr4 137537660 137537804 -18092316 - B1_Mur2 SINE Alu -2 147 3 1 1634 528 254 20 40 chr4 137538373 137538521 -18091599 + ID_B1 SINE B4 79 223 -1 1 1634 493 298 47 21 chr4 137538528 137538720 -18091400 + ID_B1 SINE B4 2 198 -26 1 1634 243 0 0 0 chr4 137538746 137538773 -18091347 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1634 1563 79 9 0 chr4 137538788 137539003 -18091117 - ORR1A2 LTR MaLR -62 265 49 1 1634 190 135 0 75 chr4 137539028 137539068 -18091052 - L2a LINE L2 -13 3413 3377 1 1634 1257 41 0 0 chr4 137539193 137539339 -18090781 + B1_Mm SINE Alu 2 147 0 1 1634 21 0 0 0 chr4 137539339 137539360 -18090760 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 427 326 43 0 chr4 137539431 137539572 -18090548 - B1F1 SINE Alu -2 147 1 1 1634 271 376 19 25 chr4 137539572 137539592 -18090528 - ID_B1 SINE B4 -1 223 64 1 1634 818 100 121 0 chr4 137539722 137539862 -18090258 + B2_Mm2 SINE B2 1 157 -38 1 1634 763 57 19 0 chr4 137539857 137539962 -18090158 + B1_Mm SINE Alu 35 141 -6 1 1634 540 0 0 0 chr4 137539964 137540024 -18090096 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1 1634 1339 90 16 21 chr4 137540525 137540718 -18089402 + B2_Mm1t SINE B2 1 192 -1 1 1634 1395 16 17 16 chr4 137541139 137541907 -18088213 + (TG)n Simple_repeat Simple_repeat 1 768 0 1 1634 506 279 29 14 chr4 137542066 137542204 -18087916 - ID_B1 SINE B4 -7 217 78 1 1634 318 260 75 19 chr4 137542208 137542314 -18087806 - ID_B1 SINE B4 -1 223 112 1 1634 180 0 0 0 chr4 137542527 137542547 -18087573 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1634 1454 64 21 0 chr4 137542574 137542761 -18087359 - B2_Mm2 SINE B2 -4 191 1 1 1634 275 104 21 0 chr4 137542875 137542923 -18087197 + B1_Mus2 SINE Alu 87 135 -12 1 1634 1028 103 0 6 chr4 137542924 137543081 -18087039 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 1 1634 198 209 0 0 chr4 137543081 137543124 -18086996 + GA-rich Low_complexity Low_complexity 3 45 0 1 1634 941 248 9 33 chr4 137543141 137543354 -18086766 + B3 SINE B2 2 209 -7 1 1634 1182 68 0 0 chr4 137543394 137543540 -18086580 - B1_Mus1 SINE Alu -1 147 2 1 1634 378 160 0 26 chr4 137543541 137543618 -18086502 + B1_Mur3 SINE Alu 73 147 -2 1 1634 342 152 0 0 chr4 137543623 137543682 -18086438 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1 1634 838 167 14 28 chr4 137543693 137543835 -18086285 + B1_Mur2 SINE Alu 2 141 -8 1 1634 1080 178 5 45 chr4 137543846 137544011 -18086109 + B2_Mm2 SINE B2 2 161 -34 1 1634 252 0 0 0 chr4 137544011 137544039 -18086081 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1634 627 14 0 0 chr4 137544041 137544113 -18086007 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1634 1080 178 5 45 chr4 137544113 137544144 -18085976 + B2_Mm2 SINE B2 162 193 -2 1 1634 214 196 22 0 chr4 137544185 137544231 -18085889 + PB1D9 SINE Alu 56 102 -18 1 1634 682 190 33 104 chr4 137544360 137544542 -18085578 + B4A SINE B4 124 292 0 1 1634 333 0 0 0 chr4 137544546 137544583 -18085537 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1634 180 77 0 0 chr4 137544657 137544683 -18085437 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1634 489 186 152 23 chr4 137544727 137544859 -18085261 + B1F SINE Alu 1 149 0 1 1634 214 265 88 0 chr4 137544884 137544952 -18085168 + ID4_ SINE ID 2 75 -8 1 1634 216 150 50 0 chr4 137544952 137544992 -18085128 + GA-rich Low_complexity Low_complexity 1 42 0 1 1634 362 286 0 10 chr4 137545029 137545128 -18084992 + PB1 SINE Alu 23 120 -7 1 1634 754 106 16 0 chr4 137545129 137545252 -18084868 + (GGA)n Simple_repeat Simple_repeat 3 127 0 1 1634 193 214 250 46 chr4 137545673 137545781 -18084339 - MIRb SINE MIR -28 240 111 1 1634 653 276 5 58 chr4 137545793 137546001 -18084119 + B3A SINE B2 1 197 -1 1 1634 795 159 83 8 chr4 137546123 137546256 -18083864 - B1_Mur4 SINE Alu -7 143 1 1 1634 997 186 62 0 chr4 137546475 137546669 -18083451 - B3 SINE B2 -10 206 1 1 1634 188 286 42 28 chr4 137547207 137547279 -18082841 + MIRb SINE MIR 196 268 0 1 1634 189 0 0 0 chr4 137547737 137547758 -18082362 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1634 587 257 22 0 chr4 137547760 137547896 -18082224 + ID_B1 SINE B4 86 224 0 1 1634 962 258 43 19 chr4 137547977 137548234 -18081886 - B4 SINE B4 0 292 30 1 1634 21 0 0 0 chr4 137548318 137548339 -18081781 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 213 215 200 12 chr4 137548352 137548432 -18081688 + MIRb SINE MIR 110 204 -64 1 1634 236 266 108 9 chr4 137548750 137548862 -18081258 + MIRm SINE MIR 51 172 -96 1 1634 246 32 0 0 chr4 137549657 137549688 -18080432 + (CGG)n Simple_repeat Simple_repeat 3 33 0 1 1634 303 256 45 8 chr4 137549701 137549835 -18080285 + C-rich Low_complexity Low_complexity 4 142 0 1 1634 282 116 0 0 chr4 137549968 137550011 -18080109 + (CGG)n Simple_repeat Simple_repeat 1 43 0 1 1634 231 88 0 0 chr4 137550550 137550584 -18079536 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1634 858 97 8 0 chr4 137550980 137551104 -18079016 - B1_Mur3 SINE Alu -15 134 10 1 1634 423 164 17 111 chr4 137551000 137551117 -18079003 - MT2B LTR ERVL -337 264 159 1 1634 1131 60 0 96 chr4 137553351 137553418 -18076702 + B1_Mur4 SINE Alu 1 65 -85 1 1634 1709 26 0 0 chr4 137553418 137553610 -18076510 - B2_Mm1a SINE B2 0 193 2 1 1634 1131 60 0 96 chr4 137553610 137553708 -18076412 + B1_Mur4 SINE Alu 66 150 0 1 1634 204 40 0 0 chr4 137553708 137553733 -18076387 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1634 294 355 49 8 chr4 137553917 137554039 -18076081 - MIRb SINE MIR -48 220 94 1 1634 238 169 200 38 chr4 137554422 137554502 -18075618 + PB1D9 SINE Alu 27 119 -1 1 1634 4055 120 35 21 chr4 137554732 137555441 -18074679 - RMER6A LTR ERVK -37 719 1 1 1634 615 244 85 40 chr4 137555629 137555830 -18074290 + B3 SINE B2 1 210 -6 1 1634 1292 7 14 0 chr4 137555962 137556108 -18074012 - B1_Mus1 SINE Alu 0 148 1 2 1634 264 347 21 10 chr4 137557016 137557112 -18073008 + L2a LINE L2 3303 3399 -27 2 1634 1643 37 11 0 chr4 137557165 137557356 -18072764 - B2_Mm1a SINE B2 0 193 1 2 1634 487 226 31 4 chr4 137557532 137557664 -18072456 - B1_Mur2 SINE Alu -9 140 3 2 1634 306 0 0 0 chr4 137557689 137557723 -18072397 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1634 815 126 0 88 chr4 137558157 137558305 -18071815 - B1_Mur4 SINE Alu 0 150 16 2 1634 219 36 0 0 chr4 137558305 137558333 -18071787 + (CACAC)n Simple_repeat Simple_repeat 3 30 0 2 1634 346 269 0 37 chr4 137558345 137558426 -18071694 - PB1D7 SINE Alu -1 119 42 2 1634 291 319 97 0 chr4 137558728 137558841 -18071279 + RSINE1 SINE B4 3 126 -39 2 1634 597 14 0 0 chr4 137558863 137558933 -18071187 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1634 325 326 0 0 chr4 137558944 137559042 -18071078 + ID_B1 SINE B4 121 218 -6 2 1634 576 42 0 0 chr4 137559431 137559502 -18070618 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 1634 1134 76 0 0 chr4 137559502 137559646 -18070474 - B1_Mus1 SINE Alu -3 145 2 2 1634 315 358 27 98 chr4 137559712 137559895 -18070225 - B4A SINE B4 -120 172 3 2 1634 307 217 116 69 chr4 137559916 137560089 -18070031 - B3A SINE B2 -17 181 1 2 1634 316 293 49 76 chr4 137560099 137560243 -18069877 - RSINE1 SINE B4 -24 141 2 2 1634 380 294 47 8 chr4 137560267 137560394 -18069726 - B1_Mur1 SINE Alu -2 147 16 2 1634 209 217 0 0 chr4 137560408 137560454 -18069666 + T-rich Low_complexity Low_complexity 1 46 0 2 1634 1255 35 0 0 chr4 137560454 137560599 -18069521 - B1_Mus2 SINE Alu 0 147 3 2 1634 2076 157 70 26 chr4 137560895 137561282 -18068838 - Lx5 LINE L1 -168 6882 6479 2 1634 373 257 26 52 chr4 137561350 137561465 -18068655 + B3A SINE B2 87 198 0 2 1634 252 172 0 0 chr4 137561472 137561530 -18068590 + T-rich Low_complexity Low_complexity 1 58 0 2 1634 1196 55 7 0 chr4 137561535 137561681 -18068439 - B1_Mus1 SINE Alu -1 147 1 2 1634 733 186 0 0 chr4 137562080 137562198 -18067922 + B2_Mm2 SINE B2 8 125 -70 2 1634 243 244 75 128 chr4 137562415 137562428 -18067692 - B3 SINE B2 -125 91 3 2 1634 311 227 12 74 chr4 137562428 137562509 -18067611 - B4 SINE B4 -214 78 3 2 1634 361 234 21 86 chr4 137562510 137562650 -18067470 - L1MC4a LINE L1 -19 7863 7733 2 1634 1158 83 57 40 chr4 137562653 137562829 -18067291 + B2_Mm2 SINE B2 15 193 -2 2 1634 856 150 14 0 chr4 137562835 137562975 -18067145 + B1_Mm SINE Alu 5 146 -1 2 1634 306 0 0 0 chr4 137563040 137563074 -18067046 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1634 332 190 38 12 chr4 137563080 137563160 -18066960 - B2_Mm2 SINE B2 -109 86 5 2 1634 481 272 167 0 chr4 137563230 137563410 -18066710 - B4A SINE B4 -2 290 81 2 1634 287 225 14 14 chr4 137563593 137563665 -18066455 + ID4 SINE ID 3 74 -9 2 1634 346 268 108 82 chr4 137563758 137563990 -18066130 - L1MC4 LINE L1 -4856 1359 1122 2 1634 471 112 34 0 chr4 137563990 137564079 -18066041 + (TC)n Simple_repeat Simple_repeat 2 93 0 2 1634 1211 86 6 0 chr4 137564079 137564253 -18065867 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2 1634 1067 82 0 20 chr4 137564260 137564409 -18065711 + B1_Mus2 SINE Alu 2 147 0 2 1634 1229 81 40 0 chr4 137564415 137564588 -18065532 - B2_Mm2 SINE B2 -14 181 2 2 1634 358 184 105 0 chr4 137564879 137564955 -18065165 - U6 snRNA snRNA -21 86 3 2 1634 400 200 109 10 chr4 137564946 137565047 -18065073 - B1F SINE Alu -13 136 26 2 1634 1136 75 0 7 chr4 137565141 137565288 -18064832 - B1_Mm SINE Alu -1 146 1 2 1634 1368 82 16 0 chr4 137565296 137565479 -18064641 - B2_Mm2 SINE B2 -8 187 2 2 1634 352 283 73 62 chr4 137565765 137565957 -18064163 - B3A SINE B2 -4 194 1 2 1634 899 145 7 14 chr4 137565984 137566131 -18063989 + B1_Mus2 SINE Alu 1 146 -1 2 1634 195 173 0 0 chr4 137566496 137566548 -18063572 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1634 314 236 75 0 chr4 137566570 137566676 -18063444 - RSINE1 SINE B4 0 165 52 2 1634 420 71 0 0 chr4 137566705 137566761 -18063359 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1634 1038 51 15 0 chr4 137566761 137566898 -18063222 - B1_Mus1 SINE Alu -1 147 9 2 1634 880 185 135 0 chr4 137566926 137567104 -18063016 + B3 SINE B2 3 204 -12 2 1634 478 187 41 71 chr4 137567119 137567217 -18062903 + B3 SINE B2 35 129 -87 2 1634 700 181 66 22 chr4 137567304 137567440 -18062680 + B1_Mus2 SINE Alu 2 143 -4 2 1634 219 125 0 0 chr4 137567442 137567482 -18062638 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 2 1634 215 364 41 0 chr4 137567525 137567646 -18062474 + MIRc SINE MIR 83 208 -60 2 1634 221 98 24 0 chr4 137567685 137567726 -18062394 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1634 736 236 38 24 chr4 137568326 137568539 -18061581 - B3 SINE B2 0 216 1 2 1634 1232 93 55 6 chr4 137568583 137568766 -18061354 - B2_Mm1a SINE B2 -1 192 1 2 1634 707 270 43 43 chr4 137569059 137569341 -18060779 - B4A SINE B4 -6 286 5 2 1634 334 228 137 60 chr4 137569479 137569613 -18060507 - B1_Mur2 SINE Alu 0 149 1 2 1634 330 26 0 0 chr4 137569892 137569931 -18060189 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1634 1355 24 127 0 chr4 137569948 137570114 -18060006 - B2_Mm1a SINE B2 -5 188 2 2 1634 774 126 94 0 chr4 137571200 137571327 -18058793 - B1_Mus1 SINE Alu -9 139 1 2 1634 352 208 108 10 chr4 137571481 137571583 -18058537 - PB1D7 SINE Alu -8 112 1 2 1634 292 151 0 54 chr4 137571844 137571900 -18058220 - PB1D9 SINE Alu 0 120 68 2 1634 952 116 14 7 chr4 137572245 137572392 -18057728 - B1_Mur4 SINE Alu 0 150 3 2 1634 236 231 62 0 chr4 137572619 137572684 -18057436 + ID4 SINE ID 4 72 -11 2 1634 291 28 0 0 chr4 137573683 137573719 -18056401 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1634 289 246 139 54 chr4 137574307 137574436 -18055684 + B4 SINE B4 81 220 -72 2 1634 483 176 33 115 chr4 137574320 137574442 -18055678 + PB1D9 SINE Alu 9 120 0 2 1634 1357 210 57 60 chr4 137574518 137574903 -18055217 - ORR1C2 LTR MaLR 0 384 1 2 1634 223 137 19 19 chr4 137574970 137575022 -18055098 + T-rich Low_complexity Low_complexity 5 56 0 2 1634 788 194 35 0 chr4 137575022 137575166 -18054954 - B1_Mur2 SINE Alu 0 149 1 2 1634 333 131 0 0 chr4 137575167 137575228 -18054892 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1634 220 220 102 0 chr4 137575367 137575409 -18054711 + PB1D10 SINE Alu 42 83 -34 2 1634 612 73 0 0 chr4 137575409 137575491 -18054629 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1634 220 220 102 0 chr4 137575491 137575507 -18054613 + PB1D10 SINE Alu 84 104 -13 2 1634 216 0 0 0 chr4 137575672 137575696 -18054424 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1634 228 254 45 0 chr4 137575696 137575763 -18054357 - B1_Mur2 SINE Alu -33 116 47 2 1634 187 224 20 133 chr4 137575934 137576032 -18054088 + MIR SINE MIR 49 135 -73 2 1634 349 235 100 0 chr4 137576185 137576280 -18053840 - PB1D10 SINE Alu -5 115 10 2 1634 232 308 64 0 chr4 137576309 137576387 -18053733 + PB1D7 SINE Alu 20 102 -18 2 1634 1405 51 39 17 chr4 137578062 137578242 -18051878 + B2_Mm2 SINE B2 3 186 -9 2 1634 1142 36 7 0 chr4 137578252 137578391 -18051729 + B1_Mus2 SINE Alu 1 140 -7 2 1634 27 0 0 0 chr4 137578760 137578787 -18051333 + AT_rich Low_complexity Low_complexity 1 27 0 2 1634 1043 268 138 6 chr4 137579406 137579755 -18050365 + MTD LTR MaLR 12 406 -13 2 1634 977 102 0 14 chr4 137580049 137580189 -18049931 - B1_Mus2 SINE Alu -9 138 1 2 1634 212 0 0 35 chr4 137580206 137580235 -18049885 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 2 1634 1172 101 6 0 chr4 137580235 137580413 -18049707 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1634 408 294 134 24 chr4 137580432 137580626 -18049494 - ID_B1 SINE B4 -6 218 6 2 1634 299 281 31 10 chr4 137580829 137580926 -18049194 + RSINE1 SINE B4 3 101 -64 2 1634 183 80 0 0 chr4 137580948 137580973 -18049147 + (TCTCCC)n Simple_repeat Simple_repeat 4 28 0 2 1634 264 91 0 0 chr4 137580990 137581034 -18049086 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 2 1634 477 0 0 0 chr4 137581036 137581089 -18049031 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1634 235 226 129 0 chr4 137581189 137581251 -18048869 - RSINE1 SINE B4 -7 158 89 2 1634 595 250 76 70 chr4 137581663 137581848 -18048272 - B3A SINE B2 0 198 13 2 1634 311 300 55 100 chr4 137582050 137582076 -18048044 - B2_Mm2 SINE B2 -2 193 166 2 1634 195 114 0 0 chr4 137582076 137582111 -18048009 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1634 615 251 14 28 chr4 137582111 137582284 -18047836 - B3A SINE B2 -30 165 3 2 1634 307 332 173 9 chr4 137582342 137582546 -18047574 - L1MCc LINE L1 -5906 517 276 2 1634 812 148 47 0 chr4 137582546 137582674 -18047446 + B1_Mur1 SINE Alu 2 135 -14 2 1634 307 332 173 9 chr4 137582674 137582694 -18047426 - L1MCc LINE L1 -6148 275 256 2 1634 896 245 42 0 chr4 137583804 137583996 -18046124 - B3 SINE B2 -12 204 5 2 1634 867 152 0 0 chr4 137584150 137584328 -18045792 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1634 526 256 12 70 chr4 137584369 137584541 -18045579 - RSINE1 SINE B4 -1 164 3 2 1634 639 274 22 49 chr4 137584543 137584727 -18045393 - B3A SINE B2 -15 183 5 3 1634 375 23 0 0 chr4 137584871 137584915 -18045205 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1634 192 135 0 0 chr4 137584965 137585002 -18045118 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1634 1139 62 7 0 chr4 137585003 137585148 -18044972 - B1_Mus1 SINE Alu -1 147 2 3 1634 1411 73 0 16 chr4 137585650 137585683 -18044437 - B2_Mm1a SINE B2 -1 192 162 3 1634 206 32 0 31 chr4 137585683 137585715 -18044405 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1634 1411 73 0 16 chr4 137585715 137585875 -18044245 - B2_Mm1a SINE B2 -32 161 3 3 1634 207 0 0 0 chr4 137586359 137586382 -18043738 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 3 1634 547 237 89 0 chr4 137587589 137587724 -18042396 - B1_Mur1 SINE Alu 0 149 3 3 1634 567 206 0 0 chr4 137587765 137587862 -18042258 - RSINE1 SINE B4 -35 130 34 3 1634 878 170 78 45 chr4 137589151 137589330 -18040790 + B2_Mm2 SINE B2 2 186 -9 3 1634 488 219 271 0 chr4 137589332 137589487 -18040633 - B3A SINE B2 -1 197 1 3 1634 417 109 0 0 chr4 137589890 137589954 -18040166 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1634 223 265 100 29 chr4 137590243 137590313 -18039807 + PB1D10 SINE Alu 23 97 -20 3 1634 510 265 30 22 chr4 137590435 137590570 -18039550 + ID_B1 SINE B4 81 216 -8 3 1634 1115 88 0 13 chr4 137590777 137590927 -18039193 - B1_Mus1 SINE Alu 0 148 1 3 1634 281 259 169 24 chr4 137590963 137591046 -18039074 + AluF_3 SINE Alu 140 210 -101 3 1634 644 158 0 0 chr4 137591425 137591526 -18038594 - B1F2 SINE Alu -9 140 40 3 1634 260 330 0 20 chr4 137592022 137592121 -18037999 - B1_Mur4 SINE Alu -2 148 52 3 1634 221 219 0 0 chr4 137592163 137592204 -18037916 + MIR SINE MIR 76 116 -92 3 1634 409 255 48 95 chr4 137593646 137593810 -18036310 - B3A SINE B2 -14 202 46 3 1634 446 218 64 0 chr4 137593879 137593989 -18036131 - PB1D10 SINE Alu 0 117 1 3 1634 330 349 115 8 chr4 137594044 137594174 -18035946 + B1F SINE Alu 6 149 0 3 1634 306 73 0 0 chr4 137594682 137594723 -18035397 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 3 1634 297 0 0 0 chr4 137595120 137595153 -18034967 + (TTAG)n Simple_repeat Simple_repeat 2 34 0 3 1634 522 46 0 0 chr4 137595493 137595558 -18034562 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1634 222 220 0 92 chr4 137595968 137595991 -18034129 - B1F2 SINE Alu -90 59 38 3 1634 249 33 0 0 chr4 137595991 137596021 -18034099 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1634 339 204 177 31 chr4 137596021 137596117 -18034003 - PB1D9 SINE Alu -10 110 1 3 1634 222 220 0 92 chr4 137596117 137596157 -18033963 - B1F2 SINE Alu -112 37 2 3 1634 450 232 52 26 chr4 137596209 137596324 -18033796 + Charlie1a DNA MER1_type 266 383 -1072 3 1634 261 317 29 29 chr4 137596341 137596358 -18033762 + ID SINE ID 67 83 -141 3 1634 352 255 73 28 chr4 137596358 137596467 -18033653 + PB1D10 SINE Alu 3 116 -1 3 1634 21 36 0 0 chr4 137596797 137596825 -18033295 + AT_rich Low_complexity Low_complexity 1 28 0 3 1634 649 271 7 7 chr4 137597061 137597206 -18032914 - B3A SINE B2 -4 194 50 3 1634 284 138 52 0 chr4 137597345 137597403 -18032717 + CT-rich Low_complexity Low_complexity 4 64 0 3 1634 257 165 38 76 chr4 137597818 137597923 -18032197 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 1634 249 159 0 0 chr4 137597923 137597967 -18032153 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 3 1634 431 261 169 0 chr4 137598425 137598457 -18031663 - B3 SINE B2 0 216 182 3 1634 182 83 56 0 chr4 137598457 137598493 -18031627 + (TATG)n Simple_repeat Simple_repeat 1 38 0 3 1634 431 261 169 0 chr4 137598493 137598644 -18031476 - B3 SINE B2 -35 181 3 3 1634 273 262 26 61 chr4 137598649 137598763 -18031357 - PB1D7 SINE Alu -7 113 4 3 1634 1254 81 15 84 chr4 137598961 137599164 -18030956 + B2_Mm2 SINE B2 2 190 -5 3 1634 1193 61 0 7 chr4 137600660 137600808 -18029312 + B1_Mus1 SINE Alu 2 148 0 3 1634 183 80 0 0 chr4 137601627 137601652 -18028468 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1634 219 139 0 0 chr4 137601681 137601717 -18028403 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1634 366 238 97 71 chr4 137601717 137601830 -18028290 - B1_Mur3 SINE Alu 0 149 34 3 1634 755 149 156 28 chr4 137601845 137602024 -18028096 - B3 SINE B2 -14 202 1 3 1634 626 156 189 0 chr4 137602077 137602199 -18027921 + B1_Mus2 SINE Alu 3 147 0 3 1634 241 292 42 0 chr4 137602706 137602802 -18027318 + PB1D10 SINE Alu 1 100 -17 3 1634 1697 174 84 50 chr4 137603531 137603578 -18026542 - ORR1B1 LTR MaLR 0 394 351 3 1634 686 191 22 7 chr4 137603578 137603715 -18026405 - B1_Mus2 SINE Alu -7 140 2 3 1634 1697 174 84 50 chr4 137603715 137604048 -18026072 - ORR1B1 LTR MaLR -44 350 1 3 1634 473 227 27 0 chr4 137604828 137604938 -18025182 + PB1D9 SINE Alu 1 113 -7 3 1634 221 284 40 0 chr4 137605031 137605105 -18025015 - PB1 SINE Alu -20 107 31 3 1634 526 232 18 0 chr4 137605144 137605256 -18024864 - B1_Mur2 SINE Alu -9 140 27 3 1634 624 248 14 0 chr4 137605292 137605437 -18024683 - B1F2 SINE Alu -1 148 2 3 1634 379 262 55 39 chr4 137605323 137605450 -18024670 - B4A SINE B4 -86 206 78 3 1634 224 283 0 0 chr4 137606720 137606773 -18023347 - B1F SINE Alu -58 91 39 3 1634 282 200 27 54 chr4 137606961 137607035 -18023085 - B1F1 SINE Alu -1 148 77 3 1634 576 286 52 16 chr4 137607058 137607250 -18022870 - B4A SINE B4 -56 236 38 3 1634 22 0 0 0 chr4 137607444 137607466 -18022654 + AT_rich Low_complexity Low_complexity 1 22 0 3 1634 938 121 0 54 chr4 137608131 137608280 -18021840 - B1_Mur4 SINE Alu 0 150 10 3 1634 359 74 348 18 chr4 137608318 137608430 -18021690 - B2_Mm2 SINE B2 0 195 47 3 1634 1091 113 65 0 chr4 137608477 137608645 -18021475 - B2_Mm1t SINE B2 -14 179 1 3 1634 708 266 67 52 chr4 137608654 137608864 -18021256 - B3 SINE B2 -3 213 1 3 1634 500 265 59 0 chr4 137608887 137609023 -18021097 - B1_Mur2 SINE Alu -1 148 5 3 1634 749 188 0 22 chr4 137609363 137609499 -18020621 - B1_Mur1 SINE Alu -1 148 16 3 1634 391 215 0 160 chr4 137609374 137609518 -18020602 - MT2B LTR ERVL -316 285 165 3 1634 955 119 37 24 chr4 137610130 137610255 -18019865 + B2_Mm1t SINE B2 28 152 -41 3 1634 1638 27 5 0 chr4 137610255 137610442 -18019678 - B2_Mm1a SINE B2 -4 189 2 3 1634 955 119 37 24 chr4 137610442 137610480 -18019640 + B2_Mm1t SINE B2 153 193 0 3 1634 663 88 272 0 chr4 137610490 137610604 -18019516 + B1_Mus1 SINE Alu 4 148 0 3 1634 828 236 58 58 chr4 137610613 137610820 -18019300 - B3 SINE B2 0 216 10 3 1634 492 240 27 27 chr4 137611338 137611462 -18018658 + B1F SINE Alu 14 142 -7 3 1634 221 265 159 14 chr4 137612396 137612465 -18017655 + RSINE1 SINE B4 3 81 -84 3 1634 290 290 89 10 chr4 137612717 137612818 -18017302 - PB1D10 SINE Alu -8 109 1 3 1634 357 307 43 28 chr4 137612818 137612874 -18017246 - ID SINE ID -140 84 27 3 1634 256 242 65 83 chr4 137612888 137612996 -18017124 - PB1D10 SINE Alu -3 114 9 3 1634 1000 91 14 20 chr4 137613639 137613785 -18016335 - B1_Mus1 SINE Alu 0 148 4 3 1634 953 117 20 20 chr4 137614240 137614388 -18015732 + B1_Mur3 SINE Alu 2 149 0 3 1634 518 79 13 0 chr4 137614440 137614516 -18015604 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 3 1634 389 311 119 76 chr4 137614787 137615957 -18014163 - L1MD LINE L1 -2694 3452 2561 3 1634 1579 52 5 0 chr4 137616214 137616406 -18013714 + B2_Mm1a SINE B2 1 193 0 3 1634 234 254 14 14 chr4 137616413 137616485 -18013635 - B3 SINE B2 -142 74 3 3 1634 1026 96 76 35 chr4 137616758 137616930 -18013190 - B2_Mm2 SINE B2 -16 179 1 3 1634 769 191 342 8 chr4 137617405 137617660 -18012460 - MTD LTR MaLR -14 405 79 3 1634 258 198 36 12 chr4 137617690 137617778 -18012342 + ORR1C2 LTR MaLR 49 141 -243 3 1634 1117 132 7 42 chr4 137617784 137618067 -18012053 + (CCTG)n Simple_repeat Simple_repeat 1 273 0 3 1634 715 191 140 17 chr4 137618067 137618265 -18011855 + ORR1C2 LTR MaLR 109 383 -1 3 1634 699 165 0 0 chr4 137618335 137618438 -18011682 - B1_Mus2 SINE Alu -13 134 32 3 1634 275 261 122 66 chr4 137618480 137618677 -18011443 - LTR41 LTR ERVL -261 507 300 3 1634 1215 35 7 0 chr4 137618961 137619103 -18011017 - B1_Mm SINE Alu 0 147 5 3 1634 2554 154 132 34 chr4 137619111 137619642 -18010478 - RMER4B LTR ERVK -2 583 1 3 1634 546 255 101 18 chr4 137619736 137619904 -18010216 - LTR41 LTR ERVL -584 184 3 3 1634 192 40 0 0 chr4 137620191 137620216 -18009904 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1634 216 0 0 0 chr4 137620216 137620239 -18009881 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1634 276 239 228 9 chr4 137620408 137620522 -18009598 - B4A SINE B4 -73 219 81 3 1634 587 247 34 73 chr4 137620747 137620952 -18009168 - B3 SINE B2 -5 211 15 3 1634 631 180 0 47 chr4 137621143 137621271 -18008849 + BC1_Mm scRNA scRNA 1 122 -30 3 1634 309 299 65 29 chr4 137621299 137621437 -18008683 - B1F SINE Alu -6 143 1 3 1634 765 143 57 7 chr4 137622885 137623026 -18007094 - B1_Mus1 SINE Alu 0 148 1 3 1634 1519 135 39 90 chr4 137623061 137623399 -18006721 - ORR1B1 LTR MaLR -3 391 1 3 1634 474 108 0 0 chr4 137623549 137623623 -18006497 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1634 216 0 0 0 chr4 137623623 137623647 -18006473 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1634 320 258 62 0 chr4 137624356 137624453 -18005667 - PB1D10 SINE Alu -3 114 12 3 1635 1173 62 7 0 chr4 137625692 137625836 -18004284 + B1_Mus2 SINE Alu 2 146 -1 3 1635 654 252 14 76 chr4 137625904 137626114 -18004006 + B3A SINE B2 2 198 0 3 1635 579 303 115 27 chr4 137626145 137626406 -18003714 + B4A SINE B4 8 291 -1 4 1635 680 159 83 8 chr4 137626536 137626669 -18003451 + B1_Mus1 SINE Alu 6 148 0 4 1635 213 234 203 0 chr4 137627952 137628016 -18002104 + B1F SINE Alu 2 78 -71 4 1635 319 229 35 158 chr4 137628096 137628130 -18001990 + B4A SINE B4 66 165 -127 4 1635 477 177 0 12 chr4 137628130 137628210 -18001910 + PB1D9 SINE Alu 2 80 -40 4 1635 999 43 71 14 chr4 137628435 137628575 -18001545 - B1_Mus1 SINE Alu 0 148 1 4 1635 389 275 30 30 chr4 137628575 137628687 -18001433 - RSINE1 SINE B4 -40 125 14 4 1635 1371 67 28 11 chr4 137628767 137628948 -18001172 + B2_Mm2 SINE B2 3 186 -9 4 1635 320 322 149 41 chr4 137629284 137629627 -18000493 - L1M2 LINE L1 -807 5336 4957 4 1635 276 330 90 28 chr4 137629751 137630072 -18000048 - L1M2 LINE L1 -1227 4916 4576 4 1635 408 236 201 41 chr4 137630126 137630320 -17999800 - L1M2 LINE L1 -1679 4464 4240 4 1635 298 233 221 51 chr4 137630717 137630875 -17999245 - B3 SINE B2 -23 193 9 4 1635 425 375 40 4 chr4 137630914 137631166 -17998954 + L1M3 LINE L1 3781 4041 -2099 4 1635 2171 142 43 25 chr4 137631168 137631565 -17998555 + MTB_Mm LTR MaLR 1 404 -3 4 1635 543 259 43 29 chr4 137631637 137631776 -17998344 + B1_Mur4 SINE Alu 9 149 -1 4 1635 1252 105 21 16 chr4 137631909 137632102 -17998018 - B2_Mm2 SINE B2 -1 194 1 4 1635 251 338 0 0 chr4 137632119 137632190 -17997930 - RSINE1 SINE B4 -6 159 89 4 1635 220 65 43 21 chr4 137632698 137632745 -17997375 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 4 1635 1210 54 0 7 chr4 137632745 137632894 -17997226 - B1_Mus1 SINE Alu 0 148 1 4 1635 275 146 127 0 chr4 137632926 137632981 -17997139 - RSINE1 SINE B4 -56 109 48 4 1635 649 213 7 14 chr4 137634849 137634987 -17995133 - B1_Mur1 SINE Alu -12 137 1 4 1635 424 246 95 56 chr4 137635286 137635446 -17994674 + RSINE1 SINE B4 5 165 0 4 1635 216 67 0 0 chr4 137635494 137635524 -17994596 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1635 642 182 71 28 chr4 137635546 137635687 -17994433 + B1_Mur2 SINE Alu 3 149 0 4 1635 614 125 0 37 chr4 137636063 137636171 -17993949 + B1_Mus1 SINE Alu 1 104 -44 4 1635 614 287 31 7 chr4 137636730 137636928 -17993192 + B3A SINE B2 10 212 -4 4 1635 231 146 0 0 chr4 137637193 137637234 -17992886 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1635 271 324 25 82 chr4 137637341 137637499 -17992621 + Charlie25 DNA MER1_type 1095 1243 -1281 4 1635 216 0 0 0 chr4 137642538 137642562 -17987558 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1635 255 31 0 0 chr4 137642886 137642918 -17987202 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1635 195 230 62 107 chr4 137644135 137644247 -17985873 + MIRc SINE MIR 37 143 -125 4 1635 446 286 118 79 chr4 137644645 137644860 -17985260 + MIRb SINE MIR 34 253 -15 4 1635 679 249 110 11 chr4 137644900 137645091 -17985029 - B3 SINE B2 -6 210 1 4 1635 180 77 0 0 chr4 137645289 137645315 -17984805 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 4 1635 1404 62 39 0 chr4 137645315 137645494 -17984626 - B2_Mm2 SINE B2 -9 186 1 4 1635 314 260 41 136 chr4 137646172 137646341 -17983779 - RSINE1 SINE B4 -10 155 3 4 1635 252 0 0 0 chr4 137646365 137646393 -17983727 + (CTA)n Simple_repeat Simple_repeat 1 28 0 4 1635 1146 80 0 0 chr4 137646393 137646569 -17983551 + (TTC)n Simple_repeat Simple_repeat 3 178 0 4 1635 330 45 0 0 chr4 137646570 137646614 -17983506 + (CTA)n Simple_repeat Simple_repeat 2 45 0 4 1635 205 171 0 0 chr4 137646614 137646649 -17983471 + CT-rich Low_complexity Low_complexity 1 35 0 4 1635 383 127 0 0 chr4 137646686 137646741 -17983379 - B2_Mm2 SINE B2 -94 101 47 4 1635 1219 56 25 0 chr4 137646777 137646937 -17983183 - B2_Mm2 SINE B2 -30 165 2 4 1635 517 292 7 34 chr4 137647711 137647860 -17982260 - B1_Mur1 SINE Alu -1 148 4 4 1635 304 236 0 0 chr4 137648603 137648658 -17981462 - B2_Mm2 SINE B2 -140 55 1 4 1635 225 250 23 200 chr4 137648776 137648906 -17981214 + MER3 DNA MER1_type 1 107 -102 4 1635 2145 139 72 16 chr4 137648917 137649290 -17980830 - ORR1B1 LTR MaLR 0 394 1 4 1635 293 191 35 0 chr4 137649630 137649745 -17980375 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 1635 342 0 0 0 chr4 137650173 137650211 -17979909 + (CAG)n Simple_repeat Simple_repeat 3 40 0 4 1635 180 0 0 0 chr4 137651464 137651484 -17978636 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1635 210 118 0 0 chr4 137652002 137652036 -17978084 + (CGGG)n Simple_repeat Simple_repeat 4 37 0 4 1635 236 261 29 0 chr4 137653625 137653694 -17976426 + L2a LINE L2 3316 3386 -40 4 1635 333 211 2 0 chr4 137653825 137653898 -17976222 - PB1D10 SINE Alu -12 105 34 4 1635 688 188 27 14 chr4 137654705 137654851 -17975269 + B1_Mur4 SINE Alu 3 150 0 4 1635 461 62 15 0 chr4 137655228 137655293 -17974827 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 4 1635 390 306 95 0 chr4 137655295 137655442 -17974678 - RSINE1 SINE B4 -2 163 3 4 1635 223 358 42 42 chr4 137657111 137657134 -17972986 - ID_B1 SINE B4 0 224 82 4 1635 458 292 33 0 chr4 137657134 137657254 -17972866 - B1_Mur1 SINE Alu -25 124 1 4 1635 315 307 20 0 chr4 137657365 137657466 -17972654 - PB1D10 SINE Alu -1 116 14 4 1635 405 286 20 48 chr4 137657651 137657798 -17972322 + B1_Mur2 SINE Alu 7 149 0 4 1635 408 369 15 25 chr4 137657840 137658043 -17972077 + ID_B1 SINE B4 8 208 -16 4 1635 342 198 76 38 chr4 137658999 137659104 -17971016 + PB1D9 SINE Alu 7 115 -5 4 1635 234 91 0 0 chr4 137660165 137660198 -17969922 + (TGG)n Simple_repeat Simple_repeat 2 34 0 4 1635 486 254 22 15 chr4 137660225 137660361 -17969759 + B1F1 SINE Alu 12 148 -1 4 1635 668 212 40 74 chr4 137662702 137662920 -17967200 - B3A SINE B2 0 216 2 4 1635 477 0 0 0 chr4 137663437 137663490 -17966630 + (TTG)n Simple_repeat Simple_repeat 1 53 0 4 1635 547 201 60 37 chr4 137663490 137663624 -17966496 - B1_Mur2 SINE Alu -12 137 1 4 1635 265 310 42 0 chr4 137664900 137664971 -17965149 - B1F1 SINE Alu -69 80 7 4 1635 459 327 83 23 chr4 137665403 137665619 -17964501 - MER73 LTR ERVL -125 519 291 4 1635 535 234 163 0 chr4 137666321 137666462 -17963658 - B3 SINE B2 -52 164 1 4 1635 372 198 204 21 chr4 137667180 137667273 -17962847 + PB1D9 SINE Alu 1 110 -10 4 1635 284 312 6 38 chr4 137667719 137667879 -17962241 + GA-rich Low_complexity Low_complexity 2 156 0 4 1635 487 233 75 0 chr4 137668228 137668348 -17961772 + ID_B1 SINE B4 93 221 -3 4 1635 298 217 0 2 chr4 137669044 137669114 -17961006 - MLT1A1 LTR MaLR -12 396 293 4 1635 358 181 44 88 chr4 137669289 137669380 -17960740 - B1_Mur1 SINE Alu -1 148 62 4 1635 403 212 0 175 chr4 137670134 137670271 -17959849 - B3 SINE B2 -7 209 97 4 1635 242 292 35 23 chr4 137671404 137671507 -17958613 - B1F SINE Alu -8 112 3 4 1635 192 111 0 0 chr4 137672596 137672632 -17957488 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1635 369 43 0 0 chr4 137672632 137672679 -17957441 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1635 1691 191 14 91 chr4 137672724 137672926 -17957194 + RMER10B LTR ERVL 1 194 -204 4 1635 1224 76 29 12 chr4 137672926 137673099 -17957021 - B2_Mm2 SINE B2 -19 176 1 4 1635 1691 191 14 91 chr4 137673099 137673110 -17957010 + RMER10B LTR ERVL 195 203 -195 4 1635 956 124 136 0 chr4 137673110 137673279 -17956841 - B2_Mm2 SINE B2 -2 193 2 4 1635 1691 191 14 91 chr4 137673279 137673495 -17956625 + RMER10B LTR ERVL 204 398 0 4 1635 1424 256 28 14 chr4 137673550 137673911 -17956209 - Lx7 LINE L1 -716 6980 6615 4 1635 339 276 52 39 chr4 137673922 137674076 -17956044 - B4A SINE B4 -59 233 66 4 1635 389 301 162 49 chr4 137674125 137674310 -17955810 - B4A SINE B4 -86 206 1 4 1635 600 171 100 25 chr4 137675164 137675284 -17954836 - B1_Mus2 SINE Alu -5 142 14 4 1635 308 135 19 0 chr4 137677214 137677266 -17952854 - B1_Mur4 SINE Alu 0 150 98 4 1635 453 236 137 8 chr4 137677441 137677565 -17952555 - B1F SINE Alu -6 143 4 4 1635 22 0 0 0 chr4 137677691 137677713 -17952407 + AT_rich Low_complexity Low_complexity 1 22 0 4 1635 1630 11 11 0 chr4 137677713 137677894 -17952226 - B2_Mm1a SINE B2 -10 183 1 4 1635 1721 21 0 0 chr4 137677907 137678100 -17952020 - B2_Mm1a SINE B2 0 193 1 4 1635 282 310 45 11 chr4 137678275 137678363 -17951757 - B1F SINE Alu -10 139 49 4 1635 450 322 48 5 chr4 137679019 137679225 -17950895 - ID_B1 SINE B4 -9 215 1 4 1635 308 285 89 76 chr4 137679625 137679849 -17950271 + MIRb SINE MIR 42 268 0 4 1635 360 0 0 0 chr4 137681002 137681042 -17949078 + (CATA)n Simple_repeat Simple_repeat 4 43 0 4 1635 342 175 0 0 chr4 137681353 137681410 -17948710 + B1F1 SINE Alu 1 57 -92 4 1635 380 312 15 81 chr4 137683043 137683179 -17946941 + B1_Mm SINE Alu 10 136 -11 4 1635 26 0 0 0 chr4 137683320 137683346 -17946774 + AT_rich Low_complexity Low_complexity 1 26 0 4 1635 663 160 162 84 chr4 137683348 137683539 -17946581 - B3 SINE B2 -7 209 4 4 1635 1738 21 0 0 chr4 137684110 137684303 -17945817 + B2_Mm1a SINE B2 1 193 0 4 1635 375 311 6 69 chr4 137684449 137684608 -17945512 + B1F1 SINE Alu 1 149 0 4 1635 440 192 93 18 chr4 137684687 137684802 -17945318 - B1F SINE Alu -9 140 6 4 1635 269 349 0 9 chr4 137684800 137684907 -17945213 - LTR73 LTR ERV1 -301 271 166 4 1635 323 179 286 24 chr4 137685240 137685366 -17944754 - MTD LTR MaLR -65 354 196 5 1635 557 179 32 0 chr4 137685383 137685478 -17944642 - MTD LTR MaLR -321 98 1 5 1635 911 73 103 0 chr4 137686115 137686251 -17943869 - B2_Mm2 SINE B2 0 195 46 5 1635 870 136 19 45 chr4 137686432 137686586 -17943534 - B1_Mur4 SINE Alu 0 150 1 5 1635 394 139 99 38 chr4 137687072 137687163 -17942957 + B1_Mur2 SINE Alu 61 141 -8 5 1635 226 235 206 0 chr4 137687758 137687826 -17942294 - RSINE1 SINE B4 -40 125 44 5 1635 253 179 0 0 chr4 137689908 137689947 -17940173 + (CCG)n Simple_repeat Simple_repeat 2 40 0 5 1635 382 173 137 86 chr4 137690748 137690887 -17939233 + RSINE1 SINE B4 4 149 -16 5 1635 216 0 0 0 chr4 137690887 137690911 -17939209 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1635 231 36 0 0 chr4 137690912 137690940 -17939180 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1635 622 214 15 15 chr4 137691158 137691291 -17938829 - B1_Mur1 SINE Alu -7 142 10 5 1635 319 113 123 46 chr4 137691684 137691749 -17938371 + PB1D9 SINE Alu 21 90 -30 5 1635 231 36 0 0 chr4 137691914 137691942 -17938178 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1635 511 198 131 4 chr4 137691960 137692088 -17938032 - B1_Mus2 SINE Alu -1 148 7 5 1635 395 215 98 91 chr4 137692269 137692412 -17937708 - B3A SINE B2 -54 144 1 5 1635 180 0 0 0 chr4 137692542 137692562 -17937558 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 5 1635 741 240 21 27 chr4 137692868 137693056 -17937064 + B3A SINE B2 8 194 -4 5 1635 259 226 0 54 chr4 137693292 137693348 -17936772 - B3A SINE B2 -136 62 10 5 1635 667 239 14 14 chr4 137694003 137694147 -17935973 - B1_Mur2 SINE Alu 0 149 6 5 1635 261 256 12 12 chr4 137694691 137694774 -17935346 - MER67C LTR ERV1 -18 693 611 5 1635 244 281 84 37 chr4 137695033 137695140 -17934980 - B1_Mus1 SINE Alu -2 146 35 5 1635 1366 77 66 0 chr4 137695747 137695930 -17934190 - B2_Mm2 SINE B2 0 195 1 5 1635 3854 126 118 7 chr4 137695931 137696610 -17933510 - RMER6A LTR ERVK -2 754 1 5 1635 985 96 0 7 chr4 137696616 137696753 -17933367 - B2_Mm2 SINE B2 -58 137 2 5 1635 1220 60 77 0 chr4 137697007 137697175 -17932945 + B2_Mm2 SINE B2 1 181 -14 5 1635 537 259 0 0 chr4 137697860 137697968 -17932152 + B1_Mur1 SINE Alu 29 136 -13 5 1635 234 237 0 33 chr4 137698201 137698262 -17931858 + ORR1A3-int LTR MaLR 1761 1819 -144 5 1635 1443 65 38 0 chr4 137698414 137698600 -17931520 + B2_Mm2 SINE B2 1 193 -2 5 1635 682 262 45 51 chr4 137698855 137699032 -17931088 + B3 SINE B2 41 216 0 5 1635 427 191 149 35 chr4 137699577 137699691 -17930429 - B1_Mur1 SINE Alu 0 149 23 5 1635 186 43 0 0 chr4 137701082 137701105 -17929015 + (CCA)n Simple_repeat Simple_repeat 1 23 0 5 1635 1431 68 16 5 chr4 137701377 137701569 -17928551 + B2_Mm2 SINE B2 1 194 -1 5 1635 669 248 15 0 chr4 137701749 137701886 -17928234 + B1_Mur1 SINE Alu 3 141 -8 5 1635 387 289 49 61 chr4 137702559 137702787 -17927333 - B4A SINE B4 0 292 21 5 1635 452 311 66 20 chr4 137702998 137703149 -17926971 - RSINE1 SINE B4 0 165 8 5 1635 389 242 59 29 chr4 137703736 137703872 -17926248 - MER58B DNA MER1_type -137 204 65 5 1635 411 358 50 0 chr4 137704026 137704205 -17925915 + B3A SINE B2 3 190 -8 5 1635 769 194 8 0 chr4 137704397 137704531 -17925589 + B1_Mus1 SINE Alu 8 142 -6 5 1635 546 163 0 0 chr4 137704532 137704630 -17925490 + (CGGA)n Simple_repeat Simple_repeat 3 100 0 5 1635 498 251 52 20 chr4 137704750 137704942 -17925178 - B3 SINE B2 0 195 1 5 1635 770 154 7 58 chr4 137704944 137705082 -17925038 - B1_Mur4 SINE Alu -18 132 2 5 1635 350 290 16 31 chr4 137705125 137705253 -17924867 - B1_Mur4 SINE Alu -21 129 4 5 1635 28 29 0 0 chr4 137705737 137705772 -17924348 + AT_rich Low_complexity Low_complexity 1 35 0 5 1635 240 246 0 50 chr4 137705840 137705900 -17924220 - ID_B1 SINE B4 -2 222 166 5 1635 306 0 0 0 chr4 137706378 137706412 -17923708 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1635 444 165 62 12 chr4 137707165 137707245 -17922875 + B1_Mus2 SINE Alu 48 131 -16 5 1635 2088 103 68 21 chr4 137707982 137708320 -17921800 + Lx LINE L1 6295 6648 -6 5 1635 324 242 93 50 chr4 137709193 137709332 -17920788 - B1F1 SINE Alu -3 146 2 5 1635 510 294 28 0 chr4 137709842 137709985 -17920135 + B3A SINE B2 5 151 -47 5 1635 953 161 17 23 chr4 137710005 137710177 -17919943 + B2_Mm2 SINE B2 1 171 -24 5 1635 709 167 43 21 chr4 137710664 137710805 -17919315 + B1_Mur3 SINE Alu 6 149 0 5 1635 2486 249 112 111 chr4 137710935 137711778 -17918342 - RMER12 LTR ERVK -3 1319 487 5 1635 1272 103 43 0 chr4 137711778 137711962 -17918158 + B2_Mm2 SINE B2 2 193 -2 5 1635 2486 249 112 111 chr4 137711962 137712435 -17917685 - RMER12 LTR ERVK -836 486 1 5 1635 533 267 120 21 chr4 137712816 137713007 -17917113 - B3 SINE B2 -5 211 2 5 1635 1190 50 0 0 chr4 137713285 137713425 -17916695 + B1_Mus1 SINE Alu 3 142 -6 5 1635 329 233 23 23 chr4 137713446 137713578 -17916542 + GA-rich Low_complexity Low_complexity 3 134 0 5 1635 1175 62 7 0 chr4 137713645 137713790 -17916330 - B1_Mus2 SINE Alu 0 147 2 5 1635 921 224 43 14 chr4 137713815 137714023 -17916097 - B3 SINE B2 -2 214 1 5 1635 243 0 0 0 chr4 137715477 137715504 -17914616 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1635 1169 56 0 0 chr4 137715516 137715658 -17914462 - B1_Mus2 SINE Alu -1 146 5 5 1635 872 129 7 29 chr4 137715737 137715873 -17914247 + B2_Mm2 SINE B2 2 134 -61 5 1635 980 328 57 10 chr4 137715893 137716294 -17913826 - RMER5 LTR ERV1 -46 488 69 5 1635 540 302 26 78 chr4 137716510 137716740 -17913380 - B4A SINE B4 -9 283 66 5 1635 268 178 65 91 chr4 137717622 137717763 -17912357 + B1_Mur2 SINE Alu 2 149 0 5 1635 474 295 37 63 chr4 137717856 137718045 -17912075 - B3A SINE B2 -10 206 25 5 1635 738 230 17 33 chr4 137718040 137718220 -17911900 - B2_Mm2 SINE B2 -11 184 8 5 1635 324 120 0 0 chr4 137718220 137718270 -17911850 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1635 563 216 60 0 chr4 137718355 137718489 -17911631 - B1F2 SINE Alu -6 143 2 5 1635 398 168 186 0 chr4 137718843 137718956 -17911164 - B1F1 SINE Alu 0 149 16 5 1635 185 0 40 0 chr4 137719604 137719629 -17910491 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1635 295 274 66 88 chr4 137719850 137719986 -17910134 - B3 SINE B2 -27 189 57 5 1635 189 0 0 0 chr4 137720045 137720066 -17910054 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 5 1635 806 94 79 0 chr4 137720607 137720734 -17909386 - B2_Mm2 SINE B2 0 195 59 5 1635 510 187 19 9 chr4 137720794 137720902 -17909218 - PB1D9 SINE Alu -7 113 5 5 1635 1230 61 0 0 chr4 137721091 137721238 -17908882 - B1_Mus1 SINE Alu 0 148 2 5 1635 182 273 35 94 chr4 137721496 137721581 -17908539 + L4 LINE RTE 191 270 -1759 5 1635 522 260 54 7 chr4 137722692 137722839 -17907281 - B3A SINE B2 -32 166 13 5 1635 218 294 43 14 chr4 137723180 137723249 -17906871 - ID4_ SINE ID 0 83 13 5 1635 477 0 0 0 chr4 137723333 137723386 -17906734 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 5 1635 378 268 101 16 chr4 137723820 137723949 -17906171 + B1F1 SINE Alu 1 140 -9 5 1635 24 67 0 0 chr4 137723951 137723996 -17906124 + AT_rich Low_complexity Low_complexity 1 45 0 5 1635 1973 160 117 5 chr4 137724139 137724516 -17905604 + MTC LTR MaLR 1 419 -2 5 1635 239 228 359 0 chr4 137724540 137724632 -17905488 + ID_B1 SINE B4 93 217 -7 5 1635 306 218 56 22 chr4 137724864 137724953 -17905167 + PB1D10 SINE Alu 14 105 -12 5 1635 375 254 50 50 chr4 137725422 137725542 -17904578 + ID_B1 SINE B4 98 217 -7 5 1635 255 304 61 82 chr4 137725597 137725619 -17904501 + B4 SINE B4 76 219 -73 5 1635 426 280 64 0 chr4 137725619 137725744 -17904376 + B1F SINE Alu 10 142 -7 5 1635 375 224 46 23 chr4 137725929 137726016 -17904104 + RSINE1 SINE B4 8 96 -69 5 1635 432 67 0 0 chr4 137726049 137726109 -17904011 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1635 651 71 0 0 chr4 137726608 137726706 -17903414 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1635 799 183 14 0 chr4 137727537 137727679 -17902441 - B1_Mur2 SINE Alu -1 148 5 5 1635 561 254 15 8 chr4 137728070 137728201 -17901919 + RSINE1 SINE B4 2 133 -32 5 1635 391 195 44 77 chr4 137728305 137728436 -17901684 + PB1D7 SINE Alu 12 126 -21 5 1635 937 188 247 7 chr4 137728595 137728874 -17901246 - MTD LTR MaLR -6 413 68 5 1635 198 0 0 0 chr4 137728874 137728896 -17901224 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1635 767 73 180 31 chr4 137728896 137729024 -17901096 - B1_Mus2 SINE Alu 0 147 1 5 1635 6495 99 5 18 chr4 137729024 137729962 -17900158 - L1_Mus4 LINE L1 0 6636 5711 5 1635 2693 123 15 0 chr4 137729959 137730357 -17899763 + L1_Mus4 LINE L1 5319 5722 -161 5 1635 344 179 30 0 chr4 137730357 137730424 -17899696 - MTD LTR MaLR -339 82 14 5 1635 250 273 76 76 chr4 137730584 137730703 -17899417 - MLT1-int LTR MaLR -130 1241 1123 5 1635 816 163 8 0 chr4 137731457 137731586 -17898534 - B1_Mur4 SINE Alu -19 131 2 5 1635 476 266 58 0 chr4 137731999 137732138 -17897982 - B1F1 SINE Alu -2 147 1 5 1635 856 109 31 8 chr4 137732140 137732269 -17897851 + B1_Mus2 SINE Alu 15 146 -1 5 1635 230 156 0 0 chr4 137732510 137732555 -17897565 + T-rich Low_complexity Low_complexity 1 45 0 6 1635 700 208 24 0 chr4 137732963 137733088 -17897032 + ID_B1 SINE B4 83 210 -14 6 1635 1258 104 49 0 chr4 137733288 137733471 -17896649 + B2_Mm2 SINE B2 1 192 -3 6 1635 398 116 155 28 chr4 137733617 137733688 -17896432 - B1_Mur1 SINE Alu -2 147 68 6 1635 498 269 43 0 chr4 137734104 137734245 -17895875 - B3 SINE B2 -6 210 64 6 1635 801 155 0 45 chr4 137734326 137734481 -17895639 - B1_Mur3 SINE Alu 0 149 2 6 1635 316 291 39 10 chr4 137734483 137734587 -17895533 + PB1D10 SINE Alu 4 110 -7 6 1635 504 214 130 51 chr4 137734597 137734735 -17895385 + B1F1 SINE Alu 1 149 0 6 1635 399 333 14 7 chr4 137734896 137735038 -17895082 + Lx8 LINE L1 7184 7326 -147 6 1635 21 0 0 0 chr4 137735176 137735197 -17894923 + AT_rich Low_complexity Low_complexity 1 21 0 6 1635 329 285 32 8 chr4 137735203 137735327 -17894793 + RMER30 DNA MER1_type 49 175 -27 6 1635 375 281 89 16 chr4 137735557 137735680 -17894440 - ID_B1 SINE B4 -11 213 82 6 1635 353 241 22 67 chr4 137735807 137735896 -17894224 + 5S rRNA rRNA 5 89 -32 6 1635 558 294 129 0 chr4 137735989 137736183 -17893937 + ID_B1 SINE B4 2 220 -4 6 1635 357 253 13 0 chr4 137737442 137737521 -17892599 + B1_Mus2 SINE Alu 1 80 -67 6 1635 352 233 27 0 chr4 137737710 137737783 -17892337 - RSINE1 SINE B4 -89 76 2 6 1635 355 315 50 103 chr4 137737818 137738119 -17892001 - Lx8 LINE L1 -4 7469 7185 6 1635 688 200 228 6 chr4 137738137 137738308 -17891812 - B3 SINE B2 -6 210 2 6 1635 204 67 0 0 chr4 137738349 137738379 -17891741 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 1635 1092 72 0 14 chr4 137738379 137738520 -17891600 - B1_Mus2 SINE Alu -8 139 1 6 1635 546 101 11 11 chr4 137738571 137738661 -17891459 + B2_Mm1a SINE B2 103 192 -1 6 1635 369 260 90 0 chr4 137741582 137741682 -17888438 - ID_B1 SINE B4 -4 220 112 6 1635 261 239 127 42 chr4 137741682 137741693 -17888427 - B1_Mur4 SINE Alu 0 109 23 6 1635 328 204 78 40 chr4 137741699 137741824 -17888296 - PB1 SINE Alu -8 141 2 6 1635 484 135 83 0 chr4 137742607 137742703 -17887417 - B1_Mur4 SINE Alu -4 146 43 6 1635 232 191 42 56 chr4 137742644 137742716 -17887404 - RLTR25B LTR ERVK -526 502 432 6 1635 219 185 56 0 chr4 137742732 137742786 -17887334 - B4A SINE B4 -150 142 86 6 1635 530 284 0 0 chr4 137742938 137743047 -17887073 - PB1D7 SINE Alu -7 113 5 6 1635 1291 103 33 0 chr4 137743071 137743255 -17886865 + B2_Mm2 SINE B2 4 193 -2 6 1635 594 0 0 0 chr4 137743271 137743337 -17886783 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 6 1635 257 291 89 44 chr4 137743546 137743636 -17886484 - PB1 SINE Alu -15 112 19 6 1635 322 308 117 25 chr4 137743645 137743765 -17886355 - B1F1 SINE Alu -18 131 1 6 1635 297 0 0 0 chr4 137745832 137745865 -17884255 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1635 798 184 196 27 chr4 137746776 137746960 -17883160 - B3 SINE B2 -1 215 1 6 1635 826 150 8 0 chr4 137747177 137747304 -17882816 - B1_Mur3 SINE Alu 0 149 22 6 1635 818 182 46 14 chr4 137748297 137748468 -17881652 + B3A SINE B2 1 168 -27 6 1635 453 19 0 0 chr4 137749121 137749175 -17880945 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1635 203 228 0 0 chr4 137749175 137749225 -17880895 + T-rich Low_complexity Low_complexity 3 52 0 6 1635 295 252 95 19 chr4 137749251 137749356 -17880764 - PB1D7 SINE Alu -7 113 1 6 1635 298 286 83 0 chr4 137749667 137749800 -17880320 - B1F SINE Alu 0 149 6 6 1635 230 159 0 0 chr4 137750232 137750276 -17879844 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 6 1635 180 0 0 0 chr4 137750276 137750296 -17879824 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1635 857 265 47 35 chr4 137750773 137751027 -17879093 + B4 SINE B4 36 292 0 6 1635 198 0 0 0 chr4 137751042 137751064 -17879056 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1635 371 213 204 0 chr4 137751589 137751697 -17878423 + B1F2 SINE Alu 10 139 -10 6 1635 227 276 146 57 chr4 137751697 137751712 -17878408 + ID_B1 SINE B4 91 224 0 6 1635 302 224 0 183 chr4 137751762 137751855 -17878265 + PB1 SINE Alu 9 92 -35 6 1635 495 247 116 19 chr4 137752117 137752308 -17877812 - B3 SINE B2 0 216 1 6 1635 190 289 94 24 chr4 137753002 137753087 -17877033 + L3 LINE CR1 1068 1158 -3331 6 1635 297 230 115 0 chr4 137753090 137753177 -17876943 + PB1D9 SINE Alu 16 112 -8 6 1635 471 236 38 0 chr4 137753362 137753468 -17876652 + ID_B1 SINE B4 106 215 -9 6 1635 229 196 43 0 chr4 137753500 137753546 -17876574 + ID_B1 SINE B4 168 215 -9 6 1635 217 140 88 123 chr4 137753505 137753562 -17876558 + PB1D7 SINE Alu 66 120 0 6 1635 229 196 43 0 chr4 137753578 137753624 -17876496 + ID_B1 SINE B4 168 215 -9 6 1635 275 304 21 107 chr4 137754254 137754394 -17875726 - B4 SINE B4 0 292 165 6 1635 380 152 124 93 chr4 137754325 137754439 -17875681 - B1F2 SINE Alu 0 149 41 6 1635 715 114 205 19 chr4 137754436 137754597 -17875523 - B2_Mm2 SINE B2 -4 191 1 6 1635 828 226 32 11 chr4 137755071 137755259 -17874861 - B3 SINE B2 -23 193 2 6 1635 200 59 0 29 chr4 137755356 137755391 -17874729 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1635 852 152 27 27 chr4 137755402 137755551 -17874569 - B1_Mur4 SINE Alu 0 150 2 6 1635 594 0 0 0 chr4 137755557 137755623 -17874497 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 6 1635 1114 57 0 7 chr4 137755625 137755767 -17874353 - B2_Mm2 SINE B2 -17 178 38 6 1635 332 278 69 9 chr4 137755924 137756040 -17874080 - ID_B1 SINE B4 -11 213 91 6 204 1364 195 227 18 chr4 137756543 137756935 -17873185 - RLTR18B LTR ERVK -12 500 27 6 1636 876 174 0 7 chr4 137757413 137757558 -17872562 - B1_Mur3 SINE Alu -1 148 5 6 1636 444 301 40 8 chr4 137757447 137757571 -17872549 - B4 SINE B4 -88 204 77 6 1636 426 347 8 0 chr4 137758118 137758242 -17871878 - ID_B1 SINE B4 -23 201 77 6 1636 228 281 0 110 chr4 137758416 137758440 -17871680 - L1MA7 LINE L1 -29 6271 6251 6 1636 534 37 0 35 chr4 137758440 137758525 -17871595 - L1Md_F2 LINE L1 -1 6581 6500 6 1636 300 238 0 34 chr4 137758525 137758600 -17871520 - L1MA7 LINE L1 -50 6250 6174 6 1636 979 17 0 16 chr4 137758788 137758909 -17871211 + B1_Mus2 SINE Alu 29 147 0 6 1636 369 283 35 17 chr4 137758937 137759052 -17871068 + PB1 SINE Alu 11 127 0 6 1636 310 194 39 65 chr4 137759060 137759137 -17870983 + ID4_ SINE ID 2 76 -7 6 1636 266 301 0 35 chr4 137759466 137759552 -17870568 + MT2B LTR ERVL 174 256 -345 6 1636 416 149 225 22 chr4 137759489 137759578 -17870542 + B1_Mur4 SINE Alu 40 146 -1 6 1636 961 217 5 28 chr4 137759603 137759816 -17870304 + B3 SINE B2 1 208 -8 6 1636 273 241 6 16 chr4 137759844 137759926 -17870194 + PB1D10 SINE Alu 9 91 -58 6 1636 267 189 137 53 chr4 137760065 137760160 -17869960 + MER3 DNA MER1_type 103 205 -4 6 1636 1382 75 32 5 chr4 137760402 137760590 -17869530 + B2_Mm2 SINE B2 2 194 -1 6 1636 391 252 39 71 chr4 137761083 137761103 -17869017 + ID_B1 SINE B4 68 216 -8 6 1636 605 214 22 22 chr4 137761103 137761237 -17868883 + B1_Mur1 SINE Alu 8 141 -8 6 1636 962 47 0 16 chr4 137761261 137761390 -17868730 + B1_Mus1 SINE Alu 22 148 0 6 1636 309 121 0 0 chr4 137761508 137761560 -17868560 - B1_Mur4 SINE Alu -90 59 9 6 1636 273 238 0 31 chr4 137761560 137761573 -17868547 - ID_B1 SINE B4 -84 140 78 6 1636 198 0 0 0 chr4 137761773 137761795 -17868325 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 6 1636 386 117 0 38 chr4 137762351 137762431 -17867689 + A-rich Low_complexity Low_complexity 1 77 0 6 1636 449 231 118 75 chr4 137763249 137763436 -17866684 + B3A SINE B2 4 198 0 6 1636 288 0 0 0 chr4 137763571 137763603 -17866517 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1636 507 248 53 58 chr4 137764648 137764819 -17865301 + B4A SINE B4 2 171 -121 6 1636 265 298 0 0 chr4 137764891 137764948 -17865172 + B1F SINE Alu 48 104 -45 6 1636 247 226 94 0 chr4 137764912 137764965 -17865155 + ID_B1 SINE B4 147 204 -20 6 1636 403 258 0 20 chr4 137765100 137765209 -17864911 + B1F SINE Alu 4 110 -10 6 1636 465 330 83 14 chr4 137765219 137765437 -17864683 + B4A SINE B4 2 234 -58 6 1636 788 178 43 31 chr4 137766431 137766593 -17863527 - B2_Mm2 SINE B2 -8 187 24 6 1636 299 252 43 43 chr4 137766670 137766786 -17863334 + B4A SINE B4 1 116 -176 6 1636 327 85 186 0 chr4 137767013 137767072 -17863048 + ID_B1 SINE B4 96 165 -59 6 1636 296 238 131 0 chr4 137767072 137767097 -17863023 + PB1D10 SINE Alu 15 109 -8 6 1636 278 122 364 10 chr4 137767110 137767209 -17862911 + B1_Mur2 SINE Alu 3 136 -13 6 1636 195 42 0 0 chr4 137767214 137767238 -17862882 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1636 879 188 7 0 chr4 137767241 137767390 -17862730 + B1_Mur4 SINE Alu 1 150 0 6 1636 412 293 0 79 chr4 137767905 137768031 -17862089 - B3 SINE B2 -10 206 91 6 1636 525 292 23 15 chr4 137768055 137768187 -17861933 - B3 SINE B2 -82 134 2 7 1636 643 278 35 35 chr4 137768192 137768390 -17861730 - B3A SINE B2 0 198 1 7 1636 22 0 0 0 chr4 137768593 137768615 -17861505 + AT_rich Low_complexity Low_complexity 1 22 0 7 1636 1083 83 14 7 chr4 137768619 137768765 -17861355 + B1_Mm SINE Alu 1 147 0 7 1636 531 262 8 8 chr4 137768821 137768944 -17861176 - RSINE1 SINE B4 -40 125 3 7 1636 351 200 21 96 chr4 137769054 137769066 -17861054 + MT2B2 LTR ERVL 153 157 -427 7 1636 607 167 0 4 chr4 137769066 137769174 -17860946 + B1_Mur2 SINE Alu 3 107 -13 7 1636 249 146 61 20 chr4 137769180 137769229 -17860891 - ID4 SINE ID -20 63 13 7 1636 377 237 41 10 chr4 137769326 137769424 -17860696 - RSINE1 SINE B4 -57 108 8 7 1636 311 268 0 47 chr4 137769455 137769541 -17860579 - ID4_ SINE ID 0 83 2 7 1636 318 306 113 72 chr4 137770330 137770347 -17859773 - B4 SINE B4 -41 251 193 7 1636 596 252 64 7 chr4 137770347 137770487 -17859633 - B1_Mur2 SINE Alu -1 148 1 7 1636 318 306 113 72 chr4 137770487 137770524 -17859596 - B4 SINE B4 -41 192 50 7 1636 189 0 0 0 chr4 137770590 137770611 -17859509 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 7 1636 436 172 39 106 chr4 137770668 137770736 -17859384 + B1_Mur1 SINE Alu 47 113 -36 7 1636 1607 166 153 14 chr4 137770736 137771096 -17859024 - RMER17C LTR ERVK 0 410 1 7 1636 436 188 0 70 chr4 137771096 137771131 -17858989 + B1_Mur1 SINE Alu 113 143 -6 7 1636 608 283 38 16 chr4 137771188 137771371 -17858749 + B3A SINE B2 7 193 -5 7 1636 23 0 0 0 chr4 137771412 137771435 -17858685 + AT_rich Low_complexity Low_complexity 1 23 0 7 1636 534 292 104 0 chr4 137771812 137772014 -17858106 - ID_B1 SINE B4 -1 223 1 7 1636 217 169 15 44 chr4 137772480 137772548 -17857572 + G-rich Low_complexity Low_complexity 4 69 0 7 1636 27 87 0 0 chr4 137772837 137772906 -17857214 + GC_rich Low_complexity Low_complexity 1 69 0 7 1636 780 150 27 48 chr4 137775034 137775181 -17854939 + B1_Mur2 SINE Alu 1 144 -5 7 1636 314 305 0 10 chr4 137775356 137775452 -17854668 - RSINE1 SINE B4 -28 137 43 7 1636 576 250 0 60 chr4 137775683 137775832 -17854288 - B1_Mur4 SINE Alu 0 150 11 7 1636 270 325 29 132 chr4 137775685 137775859 -17854261 - B4 SINE B4 -68 224 69 7 1636 628 341 37 0 chr4 137776362 137776576 -17853544 - B4A SINE B4 0 292 71 7 1636 355 224 4 106 chr4 137776720 137776842 -17853278 - B1F1 SINE Alu -1 116 6 7 1636 480 247 44 25 chr4 137778997 137779155 -17850965 - ID_B1 SINE B4 0 224 64 7 1636 446 285 21 21 chr4 137780133 137780273 -17849847 - B1F2 SINE Alu -9 140 1 7 1636 1005 96 7 40 chr4 137780573 137780725 -17849395 - B1_Mus1 SINE Alu 0 148 2 7 1636 238 26 51 0 chr4 137780843 137780882 -17849238 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1636 291 28 0 0 chr4 137780883 137780919 -17849201 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 1636 519 242 170 0 chr4 137780920 137781073 -17849047 - B3 SINE B2 -35 181 3 7 1636 281 318 65 9 chr4 137781275 137781383 -17848737 - B1_Mur3 SINE Alu -13 136 23 7 1636 658 336 37 12 chr4 137781430 137781674 -17848446 - MER2 DNA MER2_type -5 340 91 7 1636 612 187 0 0 chr4 137782140 137782247 -17847873 - B1_Mus2 SINE Alu -13 134 28 7 1636 1154 28 14 7 chr4 137782253 137782399 -17847721 - B1_Mus2 SINE Alu 0 147 1 7 1636 553 291 43 17 chr4 137782428 137782637 -17847483 + B3A SINE B2 9 213 -3 7 1636 441 231 18 14 chr4 137782783 137782897 -17847223 + B1_Mur2 SINE Alu 2 111 -6 7 1636 473 0 0 17 chr4 137783237 137783295 -17846825 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 7 1636 1206 56 0 0 chr4 137783295 137783455 -17846665 - B2_Mm1t SINE B2 -33 160 1 7 1636 390 277 165 58 chr4 137783463 137783651 -17846469 - B3 SINE B2 -6 210 3 7 1636 644 150 0 27 chr4 137783682 137783792 -17846328 - B1_Mur3 SINE Alu -1 148 42 7 1636 239 185 22 110 chr4 137783714 137783805 -17846315 - RLTR25B LTR ERVK -515 513 431 7 1636 235 266 15 131 chr4 137783742 137783872 -17846248 - ID_B1 SINE B4 -26 198 84 7 1636 248 189 38 0 chr4 137783820 137783873 -17846247 - B1_Mur4 SINE Alu -94 56 2 7 1636 732 259 53 10 chr4 137783937 137784144 -17845976 - MTE2b LTR MaLR -153 226 11 7 1636 512 221 53 0 chr4 137784231 137784344 -17845776 - PB1D7 SINE Alu 0 120 2 7 1636 189 0 0 0 chr4 137784854 137784875 -17845245 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1636 1171 47 0 0 chr4 137784875 137785023 -17845097 - B1_Mus1 SINE Alu 0 148 1 7 1636 44 0 0 0 chr4 137786141 137786185 -17843935 + AT_rich Low_complexity Low_complexity 1 44 0 7 1636 1349 58 26 31 chr4 137786612 137786807 -17843313 - B2_Mm2 SINE B2 -1 194 1 7 1636 226 289 48 88 chr4 137786858 137786983 -17843137 - MER2 DNA MER2_type -10 335 216 7 1636 218 258 91 0 chr4 137787210 137787276 -17842844 - PB1D7 SINE Alu 0 120 49 7 1636 226 286 26 13 chr4 137787310 137787388 -17842732 - ID4 SINE ID -4 79 1 7 1636 221 333 73 0 chr4 137787397 137787493 -17842627 - PB1D10 SINE Alu -2 115 13 7 1636 408 290 124 0 chr4 137787502 137787671 -17842449 - MER2 DNA MER2_type -119 226 37 7 1636 515 278 32 0 chr4 137787689 137787815 -17842305 - ID_B1 SINE B4 -9 215 86 7 1636 797 150 396 11 chr4 137788101 137788371 -17841749 - ORR1D1 LTR MaLR 0 374 1 7 1636 360 272 133 93 chr4 137788443 137788593 -17841527 + B3 SINE B2 61 216 0 7 1636 271 305 92 8 chr4 137788693 137788812 -17841308 + RSINE1 SINE B4 2 130 -35 7 1636 471 209 0 62 chr4 137788892 137788989 -17841131 - B1_Mur4 SINE Alu -47 103 13 7 1636 1152 109 11 6 chr4 137789271 137789447 -17840673 + B2_Mm2 SINE B2 1 177 -18 7 1636 229 238 15 73 chr4 137789658 137789726 -17840394 - B4 SINE B4 -6 286 223 7 1636 265 225 36 48 chr4 137790288 137790372 -17839748 - Charlie1a DNA MER1_type -47 1408 1326 7 1636 264 295 0 0 chr4 137790391 137790469 -17839651 + PB1D10 SINE Alu 40 117 0 7 1636 400 268 80 0 chr4 137790475 137790587 -17839533 + RSINE1 SINE B4 9 129 -36 7 1636 616 102 93 0 chr4 137790651 137790759 -17839361 - B1_Mus2 SINE Alu 0 147 30 7 1636 516 244 14 43 chr4 137790949 137791090 -17839030 + B1F SINE Alu 12 148 -1 7 1636 279 223 134 47 chr4 137791099 137791226 -17838894 - Charlie1a DNA MER1_type -161 1294 1157 7 1636 304 312 68 18 chr4 137791629 137791792 -17838328 - L1M4 LINE L1 -391 5793 5623 7 1636 1245 97 43 0 chr4 137791925 137792111 -17838009 - B2_Mm2 SINE B2 0 195 2 7 1636 731 299 40 0 chr4 137792245 137792446 -17837674 - ID_B1 SINE B4 0 224 16 7 1636 822 115 7 44 chr4 137792552 137792688 -17837432 - B1_Mus2 SINE Alu -16 131 1 7 1636 585 0 0 0 chr4 137793357 137793422 -17836698 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1636 467 280 24 77 chr4 137793449 137793619 -17836501 - B3 SINE B2 -52 164 4 7 1636 413 235 39 19 chr4 137794051 137794155 -17835965 + PB1 SINE Alu 22 127 0 7 1636 494 212 136 0 chr4 137794174 137794292 -17835828 - B1_Mus2 SINE Alu 0 147 14 7 1636 211 194 0 0 chr4 137794349 137794385 -17835735 + PB1D9 SINE Alu 9 44 -76 7 1636 685 169 59 0 chr4 137794606 137794742 -17835378 - B1_Mus1 SINE Alu 0 148 5 7 1636 362 272 0 80 chr4 137794644 137794756 -17835364 - MT2B LTR ERVL -344 257 155 7 1636 1127 68 0 0 chr4 137794765 137794912 -17835208 - B1_Mus1 SINE Alu 0 148 2 7 1636 1072 22 65 0 chr4 137797102 137797240 -17832880 - B1_Mus2 SINE Alu 0 147 1 7 1636 491 170 0 83 chr4 137799137 137799246 -17830874 - B2_Mm2 SINE B2 0 195 96 7 1636 817 189 200 0 chr4 137799255 137799435 -17830685 + B3 SINE B2 1 216 0 7 1636 631 163 122 0 chr4 137799461 137799584 -17830536 + B1_Mus1 SINE Alu 6 143 -5 7 1636 213 94 0 0 chr4 137799584 137799616 -17830504 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 7 1636 662 154 167 7 chr4 137800700 137800844 -17829276 - ORR1D1 LTR MaLR -8 366 200 7 1636 679 103 0 53 chr4 137800858 137800971 -17829149 - B1_Mus1 SINE Alu -11 137 31 7 1636 916 201 50 0 chr4 137800971 137801170 -17828950 - ORR1D1 LTR MaLR -165 209 1 7 1636 180 0 0 0 chr4 137801189 137801209 -17828911 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 7 1636 356 236 274 8 chr4 137801485 137801609 -17828511 - RSINE1 SINE B4 -7 158 2 7 1636 1123 68 0 0 chr4 137801645 137801791 -17828329 - B1_Mus2 SINE Alu 0 147 2 7 1636 1292 56 79 0 chr4 137801838 137802016 -17828104 - B2_Mm2 SINE B2 0 195 4 7 1636 427 285 22 30 chr4 137802116 137802250 -17827870 - B1F2 SINE Alu -8 141 9 7 1636 474 195 142 35 chr4 137802320 137802483 -17827637 - B3A SINE B2 -8 187 2 7 1636 678 177 142 56 chr4 137803698 137803895 -17826225 - B3 SINE B2 0 216 3 7 1636 492 308 28 14 chr4 137803930 137804075 -17826045 - RSINE1 SINE B4 -6 159 13 7 1636 233 281 31 15 chr4 137804086 137804151 -17825969 - ID4 SINE ID 0 83 18 7 1636 270 212 0 0 chr4 137804168 137804219 -17825901 + T-rich Low_complexity Low_complexity 16 66 0 7 1636 1163 68 0 0 chr4 137804219 137804366 -17825754 - B1_Mus2 SINE Alu 0 147 1 7 1636 270 212 0 0 chr4 137804366 137804380 -17825740 + T-rich Low_complexity Low_complexity 2 15 0 7 1636 1135 68 0 7 chr4 137804393 137804542 -17825578 + B1_Mus1 SINE Alu 1 148 0 7 1636 776 264 0 34 chr4 137804568 137804772 -17825348 + B3 SINE B2 1 197 -19 7 1636 951 222 19 24 chr4 137804780 137804992 -17825128 + B3 SINE B2 6 216 0 8 1636 29 78 0 0 chr4 137805036 137805100 -17825020 + AT_rich Low_complexity Low_complexity 1 64 0 8 1636 183 100 0 0 chr4 137806317 137806347 -17823773 + (CGGGGG)n Simple_repeat Simple_repeat 6 35 0 8 1636 191 286 14 14 chr4 137808389 137808460 -17821660 - MIR SINE MIR -111 151 81 8 1636 333 277 24 89 chr4 137809153 137809276 -17820844 - PB1 SINE Alu 0 127 13 8 1636 243 0 0 0 chr4 137809633 137809660 -17820460 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 8 1636 201 327 52 12 chr4 137811099 137811195 -17818925 - MIR SINE MIR -147 121 16 8 1636 226 231 45 30 chr4 137813764 137813831 -17816289 + MIRc SINE MIR 85 152 -116 8 1636 195 65 21 42 chr4 137814456 137814504 -17815616 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1636 939 80 15 0 chr4 137814507 137814644 -17815476 - B1_Mus2 SINE Alu 0 147 9 8 1636 504 247 71 71 chr4 137814509 137814679 -17815441 - B4 SINE B4 -69 223 54 8 1636 845 179 0 0 chr4 137815922 137816067 -17814053 + B1_Mur4 SINE Alu 6 150 0 8 1636 491 252 70 38 chr4 137817027 137817184 -17812936 + RSINE1 SINE B4 3 164 -1 8 1636 414 57 0 0 chr4 137817397 137817450 -17812670 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1636 27 62 0 0 chr4 137817633 137817681 -17812439 + AT_rich Low_complexity Low_complexity 1 48 0 8 1636 349 205 11 33 chr4 137817704 137817795 -17812325 - RSINE1 SINE B4 -74 91 3 8 1636 25 83 0 0 chr4 137818201 137818261 -17811859 + GC_rich Low_complexity Low_complexity 1 60 0 8 1636 35 71 0 0 chr4 137818305 137818375 -17811745 + GC_rich Low_complexity Low_complexity 1 70 0 8 1636 203 152 22 0 chr4 137820876 137820922 -17809198 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1636 371 291 23 8 chr4 137821128 137821256 -17808864 + MER3 DNA MER1_type 1 130 -79 8 1636 377 306 148 25 chr4 137821257 137821575 -17808545 - ORR1E LTR MaLR 0 359 3 8 1636 943 143 0 13 chr4 137821583 137821732 -17808388 - B1_Mus1 SINE Alu -1 147 1 8 1636 537 16 0 0 chr4 137821743 137821805 -17808315 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1636 1095 41 0 7 chr4 137821805 137821951 -17808169 - B2_Mm2 SINE B2 -50 145 1 8 1636 29 47 0 0 chr4 137821955 137821998 -17808122 + AT_rich Low_complexity Low_complexity 1 43 0 8 1636 793 143 7 20 chr4 137822199 137822349 -17807771 + B1_Mus1 SINE Alu 1 148 0 8 1636 403 324 55 45 chr4 137822381 137822601 -17807519 + ID_B1 SINE B4 1 222 -2 8 1636 1194 226 89 36 chr4 137823163 137823521 -17806599 - MTEa LTR MaLR -1 378 2 8 1636 270 0 0 0 chr4 137823701 137823731 -17806389 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 8 1636 2253 129 5 47 chr4 137824133 137824540 -17805580 - MTB_Mm LTR MaLR -17 390 1 8 1636 340 239 0 0 chr4 137824587 137824658 -17805462 + ID4 SINE ID 2 72 -11 8 1636 880 135 0 41 chr4 137826182 137826329 -17803791 + B1_Mus1 SINE Alu 2 142 -6 8 1636 884 59 0 8 chr4 137826333 137826453 -17803667 + (TG)n Simple_repeat Simple_repeat 2 120 0 8 1636 419 296 43 38 chr4 137826481 137826667 -17803453 - MIRb SINE MIR -40 228 42 8 1636 905 140 0 20 chr4 137826756 137826909 -17803211 + B1_Mur4 SINE Alu 1 150 0 8 1636 309 275 46 0 chr4 137827279 137827388 -17802732 + PB1D10 SINE Alu 3 116 -1 8 1636 296 292 11 33 chr4 137827388 137827480 -17802640 + GA-rich Low_complexity Low_complexity 1 90 0 8 1636 362 210 0 0 chr4 137829096 137829158 -17800962 - B1_Mus2 SINE Alu -85 62 1 8 1636 189 0 0 0 chr4 137829179 137829200 -17800920 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 8 1636 337 122 12 18 chr4 137829215 137829280 -17800840 - B2_Mm2 SINE B2 -102 114 47 8 1636 1345 46 46 0 chr4 137829310 137829484 -17800636 - B2_Mm2 SINE B2 -12 183 2 8 1636 645 204 133 51 chr4 137829516 137829712 -17800408 - B3 SINE B2 -3 213 2 8 1636 387 250 73 18 chr4 137830185 137830295 -17799825 - PB1 SINE Alu -10 117 2 8 1636 219 286 76 11 chr4 137830687 137830779 -17799341 - MIRb SINE MIR -99 169 72 8 1636 341 252 142 42 chr4 137831287 137831407 -17798713 - MIRb SINE MIR -19 249 118 8 1636 274 169 40 40 chr4 137831409 137831483 -17798637 + ID4_ SINE ID 1 74 -9 8 1636 1016 139 11 27 chr4 137831597 137831782 -17798338 + B2_Mm2 SINE B2 2 183 -12 8 1636 230 328 64 50 chr4 137831861 137832002 -17798118 - MIRc SINE MIR -105 163 21 8 1636 549 0 0 0 chr4 137832569 137832630 -17797490 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1636 399 21 0 0 chr4 137832704 137832752 -17797368 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 8 1636 747 153 20 0 chr4 137833197 137833347 -17796773 + CT-rich Low_complexity Low_complexity 1 153 0 8 1636 308 213 110 28 chr4 137833348 137833488 -17796632 - B3 SINE B2 0 216 51 8 1636 236 254 0 16 chr4 137833513 137833577 -17796543 + MIRc SINE MIR 85 147 -121 8 1636 268 301 33 39 chr4 137834737 137834917 -17795203 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 8 1636 656 155 6 81 chr4 137835136 137835153 -17794967 + ID_B1 SINE B4 76 222 0 8 1636 1076 22 0 21 chr4 137835153 137835295 -17794825 + B1_Mus1 SINE Alu 10 148 0 8 1636 984 216 57 24 chr4 137836089 137836298 -17793822 + B3 SINE B2 1 216 0 8 1636 867 98 0 0 chr4 137836322 137836445 -17793675 + B1_Mus2 SINE Alu 6 128 -19 8 1636 746 207 0 6 chr4 137836470 137836650 -17793470 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1636 891 111 0 0 chr4 137837581 137837707 -17792413 + B1_Mur4 SINE Alu 25 150 0 8 1636 884 178 7 0 chr4 137838366 137838512 -17791608 + B1_Mus1 SINE Alu 2 148 0 8 1636 223 196 0 18 chr4 137838514 137838571 -17791549 + A-rich Low_complexity Low_complexity 4 59 0 8 1636 1202 55 7 0 chr4 137839779 137839925 -17790195 + B1_Mus2 SINE Alu 1 147 0 8 1636 225 94 0 0 chr4 137840537 137840569 -17789551 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1636 319 311 46 69 chr4 137840710 137840841 -17789279 - MTEa LTR MaLR -232 147 20 8 1636 1323 206 50 109 chr4 137840843 137841246 -17788874 - MTE2a LTR MaLR 0 379 1 8 1636 211 266 15 15 chr4 137841251 137841316 -17788804 + ID SINE ID 20 84 -140 8 1636 819 234 136 0 chr4 137841354 137841538 -17788582 + B3 SINE B2 1 209 -7 8 1636 764 123 148 0 chr4 137841834 137841956 -17788164 + B1_Mur4 SINE Alu 4 143 -7 8 1636 682 62 27 0 chr4 137841956 137842068 -17788052 + (CAGAGA)n Simple_repeat Simple_repeat 6 120 0 8 1636 355 329 90 8 chr4 137842590 137842750 -17787370 - MIR SINE MIR -70 192 27 8 1636 500 126 0 8 chr4 137843002 137843088 -17787032 + B1_Mus2 SINE Alu 40 147 0 8 1636 273 306 0 0 chr4 137843089 137843151 -17786969 + polypurine Low_complexity Low_complexity 4 65 0 8 1636 189 286 131 0 chr4 137844862 137844946 -17785174 + MIR SINE MIR 53 147 -115 8 1636 2534 176 107 32 chr4 137845737 137845848 -17784272 - RMER1B Other Other -3 1063 957 8 1636 396 0 0 0 chr4 137845848 137845892 -17784228 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1636 2534 176 107 32 chr4 137845892 137846256 -17783864 - RMER1B Other Other -110 956 544 8 1636 432 0 0 0 chr4 137846256 137846304 -17783816 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1636 2534 176 107 32 chr4 137846304 137846351 -17783769 - RMER1B Other Other -523 543 502 8 1636 180 313 23 46 chr4 137846493 137846580 -17783540 - L2 LINE L2 -556 2863 2779 8 1636 540 307 78 22 chr4 137846792 137847062 -17783058 - B4A SINE B4 -7 285 1 8 1636 615 39 0 0 chr4 137847148 137847226 -17782894 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1636 7338 72 7 7 chr4 137848265 137849223 -17780897 + RLTR13A2 LTR ERVK 1 958 0 8 1636 214 196 20 0 chr4 137849898 137849949 -17780171 + (CCCTG)n Simple_repeat Simple_repeat 2 53 0 8 1636 771 40 0 0 chr4 137850066 137850165 -17779955 + (TG)n Simple_repeat Simple_repeat 1 99 0 8 1636 282 336 18 9 chr4 137850187 137850298 -17779822 + MIR SINE MIR 130 241 -21 8 1636 296 291 16 64 chr4 137850333 137850458 -17779662 - YREP_Mm Unknown Unknown -1481 331 213 8 1636 547 283 21 0 chr4 137850353 137850491 -17779629 + ID_B1 SINE B4 81 231 -61 8 1636 233 75 25 0 chr4 137850491 137850531 -17779589 + B3A SINE B2 1 41 -157 8 1636 747 201 31 12 chr4 137850572 137850733 -17779387 + B3A SINE B2 2 165 -33 8 1636 387 0 0 0 chr4 137850734 137850777 -17779343 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1636 497 59 0 0 chr4 137850778 137850846 -17779274 + B1_Mm SINE Alu 77 144 -3 8 1636 189 0 0 0 chr4 137850846 137850867 -17779253 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1636 354 121 3 3 chr4 137850874 137850935 -17779185 + B3 SINE B2 1 61 -132 8 1636 1662 36 0 0 chr4 137850954 137851146 -17778974 + B2_Mm1a SINE B2 2 193 0 8 1636 466 84 0 14 chr4 137851216 137851288 -17778832 - URR1B DNA MER1_type 0 225 155 8 1636 269 120 240 0 chr4 137851285 137851335 -17778785 + B3 SINE B2 55 116 -100 8 1636 198 103 0 0 chr4 137851370 137851399 -17778721 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1636 249 291 56 37 chr4 137851469 137851576 -17778544 + MIR3 SINE MIR 13 121 -87 8 1636 456 182 0 0 chr4 137851677 137851765 -17778355 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1636 1159 161 18 27 chr4 137852737 137852960 -17777160 + URR1A DNA MER1_type 1 221 -5 8 1636 1299 101 6 6 chr4 137853167 137853335 -17776785 + B2_Mm1a SINE B2 2 169 -24 8 1636 330 26 0 0 chr4 137853335 137853374 -17776746 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1636 1299 101 6 6 chr4 137853374 137853385 -17776735 + B2_Mm1a SINE B2 170 180 -13 8 1636 1232 41 0 26 chr4 137853385 137853536 -17776584 + B1_Mus1 SINE Alu 1 148 0 9 1636 884 153 0 18 chr4 137853539 137853769 -17776351 + GA-rich Low_complexity Low_complexity 1 225 0 9 1636 972 248 29 0 chr4 137854497 137854707 -17775413 + ID_B1 SINE B4 9 224 0 9 1636 276 244 110 0 chr4 137855075 137855157 -17774963 - MTEa LTR MaLR -288 91 1 9 1636 977 204 74 5 chr4 137855157 137855359 -17774761 + B3 SINE B2 1 216 0 9 1636 543 309 7 13 chr4 137855567 137855718 -17774402 + RSINE1 SINE B4 2 151 -14 9 1636 641 230 36 7 chr4 137855810 137855950 -17774170 + B3 SINE B2 67 210 -6 9 1636 199 182 25 0 chr4 137856051 137856106 -17774014 - MIRc SINE MIR -102 160 106 9 1636 4917 79 18 65 chr4 137856204 137856991 -17773129 - RMER17A LTR ERVK 0 751 2 9 1636 436 98 24 24 chr4 137858048 137858132 -17771988 + (TATG)n Simple_repeat Simple_repeat 3 86 0 9 1636 684 225 0 0 chr4 137858198 137858358 -17771762 + (TATATG)n Simple_repeat Simple_repeat 5 164 0 9 1636 589 318 14 0 chr4 137858391 137858539 -17771581 - RSINE1 SINE B4 -8 157 8 9 1636 252 303 26 44 chr4 137858569 137858683 -17771437 - RSINE1 SINE B4 0 165 54 9 1636 643 271 51 32 chr4 137859370 137859587 -17770533 - ID_B1 SINE B4 -2 222 2 9 1636 675 207 0 29 chr4 137859623 137859762 -17770358 - RSINE1 SINE B4 -29 136 2 9 1636 301 305 58 70 chr4 137859847 137860090 -17770030 + RMER17C LTR ERVK 120 359 -51 9 1636 634 163 39 31 chr4 137860092 137860219 -17769901 - B1_Mur1 SINE Alu -21 128 1 9 1636 257 258 67 104 chr4 137860107 137860241 -17769879 - MT2B LTR ERVL -329 272 144 9 1636 492 274 149 38 chr4 137861618 137861880 -17768240 - B4A SINE B4 0 292 2 9 1636 270 0 0 0 chr4 137862188 137862218 -17767902 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 9 1636 1225 61 0 0 chr4 137862235 137862383 -17767737 - B1_Mus1 SINE Alu 0 148 1 9 1636 799 146 348 0 chr4 137862424 137862582 -17767538 - B3 SINE B2 -1 215 3 9 1636 216 86 0 0 chr4 137862595 137862630 -17767490 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1636 1121 200 15 0 chr4 137862632 137862827 -17767293 - B3 SINE B2 -17 199 2 9 1636 1220 238 138 45 chr4 137864380 137864777 -17765343 - BGLII_B LTR ERVK -3 438 5 9 1636 252 191 100 17 chr4 137865775 137865843 -17764277 + PB1D10 SINE Alu 34 116 -11 9 1636 990 87 0 0 chr4 137865843 137865981 -17764139 + (TGGA)n Simple_repeat Simple_repeat 1 138 0 9 1636 906 217 86 0 chr4 137868313 137868511 -17761609 + B3 SINE B2 1 215 -1 9 1636 677 143 99 57 chr4 137868648 137868789 -17761331 - B1_Mus1 SINE Alu 0 148 2 9 1636 416 178 178 0 chr4 137870834 137870924 -17759196 - RSINE1 SINE B4 -57 108 3 9 1636 635 203 22 22 chr4 137870954 137871090 -17759030 - RSINE1 SINE B4 -27 138 3 9 1636 24 32 0 0 chr4 137872307 137872338 -17757782 + AT_rich Low_complexity Low_complexity 1 31 0 9 1636 419 42 206 14 chr4 137872348 137872421 -17757699 + BC1_Mm scRNA scRNA 1 87 -65 9 1636 745 204 44 8 chr4 137872416 137872593 -17757527 - B3A SINE B2 -14 181 2 9 1636 818 222 167 35 chr4 137872883 137873140 -17756980 + B4A SINE B4 2 292 0 9 1636 189 319 69 0 chr4 137874478 137874550 -17755570 + MIRm SINE MIR 150 226 -50 9 1636 250 326 81 7 chr4 137874672 137874808 -17755312 + MLT1M LTR MaLR 117 262 -410 9 1636 501 17 0 0 chr4 137877097 137877155 -17752965 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 1636 1070 107 0 0 chr4 137877170 137877310 -17752810 - B1_Mus2 SINE Alu -6 141 2 9 1636 235 336 67 0 chr4 137878174 137878278 -17751842 - L1MD1 LINE L1 -196 6163 6053 9 1636 316 386 61 34 chr4 137878331 137878604 -17751516 - L1MD1 LINE L1 -301 5941 5658 9 1636 470 243 86 22 chr4 137878611 137878750 -17751370 - B1_Mur2 SINE Alu 0 149 2 9 1636 226 325 33 33 chr4 137878780 137878901 -17751219 - L1MB3 LINE L1 -60 6111 5991 9 1636 613 283 110 14 chr4 137878943 137879059 -17751061 - L1MB3 LINE L1 -311 5872 5745 9 1636 198 0 0 0 chr4 137879059 137879081 -17751039 + (GGGTG)n Simple_repeat Simple_repeat 4 25 0 9 1636 613 283 110 14 chr4 137879081 137879254 -17750866 - L1MB3 LINE L1 -439 5744 5557 9 1636 279 302 79 42 chr4 137879344 137879534 -17750586 - L1MD1 LINE L1 -2434 5561 5365 9 1636 472 317 107 40 chr4 137879708 137879961 -17750159 + MLT2D LTR ERVL 140 409 -5 9 1636 216 295 82 21 chr4 137880190 137880287 -17749833 + MIRc SINE MIR 57 159 -109 9 1636 379 253 0 0 chr4 137880330 137880405 -17749715 + ID_B1 SINE B4 83 157 -67 9 1636 2199 91 14 41 chr4 137880405 137880749 -17749371 + Lx2 LINE L1 6632 6966 -31 9 1636 843 19 0 0 chr4 137880773 137880877 -17749243 - B1_Mm SINE Alu -9 138 35 9 1636 231 82 0 0 chr4 137880879 137880928 -17749192 - Lx LINE L1 0 6654 6606 9 1636 1256 54 0 0 chr4 137880932 137881080 -17749040 + B1_Mus1 SINE Alu 1 148 0 9 1636 23 33 0 0 chr4 137882006 137882036 -17748084 + GC_rich Low_complexity Low_complexity 1 30 0 9 1636 373 241 282 8 chr4 137882822 137882939 -17747181 - B1F1 SINE Alu 0 149 1 9 1636 261 0 0 0 chr4 137882978 137883007 -17747113 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1636 1122 52 7 0 chr4 137883090 137883226 -17746894 - B1_Mus1 SINE Alu -10 138 2 9 1636 509 107 0 0 chr4 137883227 137883300 -17746820 - RMER19B LTR ERVK -15 887 815 9 1636 2418 121 43 39 chr4 137883300 137883765 -17746355 + IAPLTR2_Mm LTR ERVK 1 467 -8 9 1636 3737 138 80 87 chr4 137883773 137884275 -17745845 - RMER19B LTR ERVK -82 820 263 9 1636 1249 119 27 16 chr4 137884275 137884462 -17745658 + B2_Mm2 SINE B2 2 190 -5 9 1636 3737 138 80 87 chr4 137884462 137884785 -17745335 - RMER19B LTR ERVK -640 262 1 9 1636 291 54 0 0 chr4 137884858 137884895 -17745225 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1636 264 237 0 0 chr4 137884989 137885055 -17745065 - B1_Mur1 SINE Alu -37 112 47 9 1636 2552 88 146 10 chr4 137885286 137885677 -17744443 + BGLII_A LTR ERVK 2 445 0 9 1636 993 117 0 0 chr4 137885677 137885814 -17744306 + B1_Mus1 SINE Alu 5 141 -7 9 1636 522 216 121 0 chr4 137885963 137886079 -17744041 - B1_Mur4 SINE Alu -14 136 7 9 1636 246 286 50 81 chr4 137886014 137886113 -17744007 - MT2B LTR ERVL -364 237 142 9 1636 847 259 4 58 chr4 137886122 137886347 -17743773 - ID_B1 SINE B4 -8 216 4 9 1636 520 297 10 125 chr4 137886827 137887035 -17743085 - B4A SINE B4 -1 291 108 9 1636 608 263 22 0 chr4 137887080 137887217 -17742903 - B4A SINE B4 -152 140 1 9 1637 202 316 25 12 chr4 137888452 137888532 -17741588 + L2c LINE L2 3272 3352 -35 9 1637 624 287 31 31 chr4 137888737 137888919 -17741201 - ID_B1 SINE B4 0 224 43 9 1637 2067 115 38 0 chr4 137888919 137889232 -17740888 - ORR1A2 LTR MaLR 0 327 3 9 1637 624 287 31 31 chr4 137889232 137889272 -17740848 - ID SINE ID -182 42 2 9 1637 325 109 18 18 chr4 137889590 137889646 -17740474 + MTEa LTR MaLR 1 56 -323 9 1637 299 328 101 26 chr4 137889685 137889892 -17740228 + MTEa LTR MaLR 141 356 -23 9 1637 340 318 174 49 chr4 137889954 137890260 -17739860 + MLT1F2 LTR MaLR 204 653 -1 9 1637 491 182 57 64 chr4 137890336 137890477 -17739643 - B1_Mur3 SINE Alu 0 149 10 9 1637 675 138 0 25 chr4 137890493 137890612 -17739508 - B1_Mur4 SINE Alu -1 149 34 9 1637 736 220 46 56 chr4 137890629 137890826 -17739294 - B3A SINE B2 -3 195 1 9 1637 474 237 44 7 chr4 137890838 137890974 -17739146 - B1F SINE Alu -8 141 1 9 1637 1043 109 14 0 chr4 137891477 137891624 -17738496 - B1_Mur4 SINE Alu -1 149 1 9 1637 1182 120 5 11 chr4 137891640 137891826 -17738294 + B2_Mm1t SINE B2 2 186 -7 9 1637 261 307 74 51 chr4 137891970 137892145 -17737975 - RMER13A LTR ERVK -95 765 587 9 1637 450 0 0 0 chr4 137892309 137892359 -17737761 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1637 575 201 13 53 chr4 137892415 137892567 -17737553 - RMER13A LTR ERVK -619 241 96 9 1637 189 0 0 0 chr4 137893025 137893046 -17737074 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 1637 354 123 0 0 chr4 137893143 137893200 -17736920 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 9 1637 236 307 29 0 chr4 137893304 137893432 -17736688 + MIRb SINE MIR 40 180 -88 9 1637 761 207 0 0 chr4 137893519 137893659 -17736461 - B1_Mur1 SINE Alu -5 144 5 9 1637 241 318 57 0 chr4 137893923 137894011 -17736109 - ORR1D2 LTR MaLR 0 370 278 9 1637 291 224 0 56 chr4 137894995 137895066 -17735054 + MIR SINE MIR 105 171 -91 9 1637 1153 55 0 7 chr4 137895186 137895333 -17734787 + B1_Mus2 SINE Alu 2 147 0 9 1637 582 315 60 29 chr4 137895414 137895695 -17734425 - B4A SINE B4 -2 290 1 9 1637 626 275 38 38 chr4 137895741 137895926 -17734194 + B3A SINE B2 9 193 -5 9 1637 953 222 153 57 chr4 137896160 137896494 -17733626 + ORR1D2 LTR MaLR 1 366 -4 9 1637 586 162 29 0 chr4 137897759 137897864 -17732256 + B1_Mus1 SINE Alu 40 147 -1 9 1637 424 312 0 0 chr4 137898090 137898199 -17731921 + RSINE1 SINE B4 1 109 -56 9 1637 195 69 0 0 chr4 137898200 137898229 -17731891 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1637 435 112 0 0 chr4 137898358 137898438 -17731682 + (TC)n Simple_repeat Simple_repeat 1 80 0 9 1637 644 233 20 7 chr4 137898456 137898603 -17731517 - B1F2 SINE Alu 0 149 1 9 1637 465 374 21 0 chr4 137898917 137899107 -17731013 - MER58A DNA MER1_type -22 202 9 9 1637 513 250 117 0 chr4 137900069 137900197 -17729923 + B3 SINE B2 3 145 -71 9 1637 283 60 40 0 chr4 137900197 137900247 -17729873 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1637 1478 47 0 35 chr4 137900267 137900465 -17729655 + B2_Mm1a SINE B2 1 191 -2 9 1637 1165 20 7 7 chr4 137900484 137900631 -17729489 + B1_Mm SINE Alu 1 147 0 9 1637 1103 214 5 0 chr4 137901108 137901328 -17728792 - ID_B1 SINE B4 -3 221 1 1 1637 294 284 0 74 chr4 137901566 137901661 -17728459 - L2a LINE L2 -5 3421 3334 1 1637 1110 68 0 7 chr4 137901821 137901968 -17728152 + B1_Mus1 SINE Alu 2 147 -1 1 1637 896 158 0 0 chr4 137902008 137902147 -17727973 - B1_Mur3 SINE Alu -9 140 2 1 1637 246 336 58 15 chr4 137902665 137902838 -17727282 - MIR SINE MIR -67 201 18 1 1637 502 277 179 11 chr4 137902975 137903154 -17726966 + ID_B1 SINE B4 2 210 -14 1 1637 459 0 0 0 chr4 137903156 137903207 -17726913 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1637 637 142 40 76 chr4 137905226 137905372 -17724748 + B1_Mur2 SINE Alu 11 149 0 1 1637 390 129 0 0 chr4 137905389 137905451 -17724669 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 1 1637 220 255 223 10 chr4 137905641 137905744 -17724376 + B4 SINE B4 2 126 -166 1 1637 912 193 16 32 chr4 137905659 137905846 -17724274 + B3 SINE B2 32 215 -1 1 1637 21 36 0 0 chr4 137906036 137906064 -17724056 + AT_rich Low_complexity Low_complexity 1 28 0 1 1637 210 265 59 0 chr4 137906101 137906169 -17723951 + (CATG)n Simple_repeat Simple_repeat 3 74 0 1 1637 534 330 9 94 chr4 137906170 137906256 -17723864 - B4A SINE B4 -1 291 229 1 1637 1092 189 50 5 chr4 137906256 137906458 -17723662 - B3 SINE B2 -5 211 1 1 1637 534 330 9 94 chr4 137906458 137906689 -17723431 - B4A SINE B4 -64 228 1 1 1637 937 240 9 22 chr4 137906701 137906923 -17723197 - ID_B1 SINE B4 -5 219 1 1 1637 279 0 0 0 chr4 137907003 137907034 -17723086 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1637 1655 215 32 71 chr4 137907283 137907374 -17722746 + MTD LTR MaLR 1 87 -332 1 1637 180 0 0 0 chr4 137907374 137907394 -17722726 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1637 1655 215 32 71 chr4 137907394 137907738 -17722382 + MTD LTR MaLR 88 419 0 1 1637 941 228 0 25 chr4 137908142 137908340 -17721780 - B3 SINE B2 0 216 24 1 1637 259 370 14 35 chr4 137908281 137908424 -17721696 + MLT1J-int LTR MaLR 822 961 -426 1 1637 271 231 31 0 chr4 137908787 137908852 -17721268 + MLT1J LTR MaLR 64 130 -382 1 1637 430 261 201 41 chr4 137908920 137909164 -17720956 - B4A SINE B4 -8 284 2 1 1637 719 200 20 14 chr4 137909266 137909413 -17720707 - B1_Mur1 SINE Alu 0 149 2 1 1637 760 239 6 11 chr4 137910235 137910417 -17719703 - B3A SINE B2 -16 182 2 1 1637 1273 91 0 46 chr4 137910445 137910640 -17719480 - B2_Mm2 SINE B2 -8 187 2 1 1637 714 246 50 50 chr4 137910648 137910866 -17719254 - B4A SINE B4 -68 224 7 1 1637 1143 62 0 0 chr4 137911187 137911332 -17718788 - B1_Mm SINE Alu -2 145 1 1 1637 540 0 0 0 chr4 137911624 137911684 -17718436 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1637 238 26 25 25 chr4 137911810 137911850 -17718270 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1637 207 0 0 0 chr4 137912073 137912096 -17718024 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1637 436 210 99 53 chr4 137912098 137912229 -17717891 - B1F SINE Alu 0 149 13 1 1637 383 277 55 28 chr4 137912099 137912244 -17717876 - ID_B1 SINE B4 0 224 76 1 1637 360 111 0 0 chr4 137912465 137912519 -17717601 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1637 1110 82 0 0 chr4 137913043 137913190 -17716930 + B1_Mus2 SINE Alu 1 147 0 1 1637 594 221 8 0 chr4 137913220 137913342 -17716778 + ID_B1 SINE B4 100 222 -2 1 1637 201 74 0 0 chr4 137913370 137913397 -17716723 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1637 693 118 0 0 chr4 137913711 137913821 -17716299 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 1637 427 232 30 0 chr4 137913852 137913951 -17716169 - ID_B1 SINE B4 0 224 123 1 1637 1883 168 16 14 chr4 137913958 137914430 -17715690 + RMER15 LTR ERVL 13 544 -31 1 1637 389 192 0 49 chr4 137914422 137914504 -17715616 - ID SINE ID -146 78 1 1 1637 1205 81 43 11 chr4 137914563 137914750 -17715370 - B2_Mm1a SINE B2 0 193 1 1 1637 557 218 56 128 chr4 137914775 137914970 -17715150 - B3A SINE B2 -16 182 2 1 1637 291 299 105 80 chr4 137915094 137915294 -17714826 + MLT1A LTR MaLR 11 215 -159 1 1637 294 312 0 11 chr4 137915311 137915405 -17714715 + MLT1A LTR MaLR 274 366 -8 1 1637 468 0 0 0 chr4 137915521 137915573 -17714547 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1637 435 38 0 0 chr4 137916221 137916274 -17713846 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1637 360 172 0 0 chr4 137916307 137916365 -17713755 - B2_Mm2 SINE B2 -91 104 47 1 1637 1079 43 108 18 chr4 137916393 137916559 -17713561 - B2_Mm2 SINE B2 -14 181 1 1 1637 636 278 22 11 chr4 137916559 137916737 -17713383 - B4 SINE B4 -66 226 47 1 1637 1328 133 32 5 chr4 137916862 137917081 -17713039 + URR1B DNA MER1_type 1 225 0 1 1637 578 276 72 92 chr4 137918037 137918329 -17711791 + B4A SINE B4 7 292 0 1 1637 576 149 121 24 chr4 137918359 137918431 -17711689 - B1_Mus2 SINE Alu -2 145 65 1 1637 420 20 0 0 chr4 137918431 137918480 -17711640 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1637 576 149 121 24 chr4 137918480 137918531 -17711589 - B1_Mus2 SINE Alu -83 64 12 1 1637 1067 93 58 37 chr4 137918625 137918674 -17711446 - B2_Mm2 SINE B2 0 195 154 1 1637 312 27 0 0 chr4 137918674 137918711 -17711409 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1637 1067 93 58 37 chr4 137918711 137918851 -17711269 - B2_Mm2 SINE B2 -42 153 4 1 1637 608 234 50 69 chr4 137919144 137919346 -17710774 + B3A SINE B2 1 198 0 1 1637 303 143 0 0 chr4 137919372 137919430 -17710690 + B1F2 SINE Alu 2 59 -91 1 1637 185 35 69 0 chr4 137919438 137919467 -17710653 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 1 1637 197 0 0 67 chr4 137919929 137919959 -17710161 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1637 579 130 18 9 chr4 137919997 137920106 -17710014 + B1_Mur4 SINE Alu 41 150 0 1 1637 1325 43 54 5 chr4 137920609 137920794 -17709326 + B2_Mm2 SINE B2 1 194 -1 1 1637 21 0 0 0 chr4 137920839 137920860 -17709260 + AT_rich Low_complexity Low_complexity 1 21 0 1 1637 714 173 60 8 chr4 137920952 137921086 -17709034 + B1_Mur3 SINE Alu 3 143 -6 1 1637 1047 103 0 0 chr4 137921094 137921240 -17708880 + B1_Mus2 SINE Alu 1 146 -1 1 1637 216 163 0 0 chr4 137921246 137921289 -17708831 + A-rich Low_complexity Low_complexity 1 43 0 1 1637 647 182 61 0 chr4 137921313 137921445 -17708675 + B1_Mus2 SINE Alu 7 146 -1 1 1637 183 80 0 0 chr4 137921714 137921739 -17708381 + (TCC)n Simple_repeat Simple_repeat 2 26 0 1 1637 478 186 12 12 chr4 137921742 137921911 -17708209 + (TCTG)n Simple_repeat Simple_repeat 2 170 0 1 1637 915 223 47 33 chr4 137921929 137922142 -17707978 - B4 SINE B4 -14 278 63 1 1637 2230 123 156 25 chr4 137922250 137922693 -17707427 + RMER15 LTR ERVL 74 574 -1 1 1637 540 193 24 24 chr4 137922806 137922976 -17707144 + CT-rich Low_complexity Low_complexity 4 173 0 1 1637 234 0 0 0 chr4 137923185 137923211 -17706909 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1637 192 190 138 0 chr4 137923336 137923394 -17706726 + MIRm SINE MIR 118 183 -93 1 1637 251 140 20 0 chr4 137924487 137924537 -17705583 + CT-rich Low_complexity Low_complexity 4 54 0 1 1637 289 304 69 22 chr4 137924682 137924844 -17705276 + MIRb SINE MIR 28 198 -64 1 1637 285 307 99 7 chr4 137925579 137925720 -17704400 + RSINE1 SINE B4 2 155 -10 1 1637 357 24 0 0 chr4 137925756 137925798 -17704322 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1637 396 0 0 0 chr4 137925798 137925841 -17704279 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1637 1288 110 16 0 chr4 137925935 137926126 -17703994 - B2_Mm2 SINE B2 -1 194 1 1 1637 522 46 0 0 chr4 137926129 137926194 -17703926 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1 1637 1103 71 0 0 chr4 137926196 137926337 -17703783 - B1_Mus2 SINE Alu -6 141 1 1 1637 235 61 0 0 chr4 137926361 137926394 -17703726 - B1_Mur4 SINE Alu -9 141 109 1 1637 834 226 3 2 chr4 137926400 137926602 -17703518 - B3A SINE B2 -1 215 12 1 1637 869 153 0 0 chr4 137926755 137926892 -17703228 + B1_Mur4 SINE Alu 7 143 -7 1 1637 225 0 0 0 chr4 137927436 137927461 -17702659 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1637 543 135 58 12 chr4 137927468 137927640 -17702480 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1637 473 137 71 6 chr4 137927654 137927823 -17702297 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1637 537 152 13 126 chr4 137927823 137927974 -17702146 - B4A SINE B4 -1 291 158 1 1637 753 195 80 13 chr4 137928044 137928195 -17701925 - RSINE1 SINE B4 -2 163 3 1 1637 1180 122 28 0 chr4 137928251 137928432 -17701688 - B2_Mm2 SINE B2 -8 187 2 1 1637 1289 210 133 22 chr4 137928680 137929040 -17701080 + MTD LTR MaLR 5 404 -15 1 1637 305 269 236 62 chr4 137929393 137929635 -17700485 + MLT1K LTR MaLR 312 595 0 1 1637 512 253 129 6 chr4 137929691 137929854 -17700266 - B3A SINE B2 -13 185 3 1 1637 315 215 175 0 chr4 137930493 137930592 -17699528 + PB1D7 SINE Alu 1 120 0 1 1637 664 159 9 32 chr4 137930882 137931031 -17699089 + B1_Mur1 SINE Alu 1 147 -2 1 1637 1091 133 6 0 chr4 137931053 137931226 -17698894 + B2_Mm2 SINE B2 4 177 -18 1 1637 390 244 0 8 chr4 137931388 137931476 -17698644 + B1_Mur1 SINE Alu 24 136 -13 1 1637 321 140 0 0 chr4 137931494 137931551 -17698569 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1637 585 0 0 0 chr4 137931632 137931697 -17698423 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1637 1004 70 0 7 chr4 137931697 137931831 -17698289 - B1_Mus1 SINE Alu -9 139 6 1 1637 244 242 0 86 chr4 137931728 137931891 -17698229 - ORR1B1-int LTR MaLR -755 754 606 1 1637 24 53 0 0 chr4 137931917 137931955 -17698165 + AT_rich Low_complexity Low_complexity 1 38 0 1 1637 1162 33 26 0 chr4 137931977 137932130 -17697990 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 1 1637 502 333 30 0 chr4 137932130 137932265 -17697855 + RSINE1 SINE B4 13 151 -14 1 1637 510 304 98 68 chr4 137932446 137932504 -17697616 - Charlie4a DNA MER1_type -124 384 330 1 1637 686 203 43 0 chr4 137932504 137932642 -17697478 - B1_Mur1 SINE Alu -1 148 5 1 1637 510 304 98 68 chr4 137932642 137932919 -17697201 - Charlie4a DNA MER1_type -179 329 39 1 1637 548 195 0 48 chr4 137933027 137933151 -17696969 + B1_Mur1 SINE Alu 30 147 -2 1 1637 868 215 41 0 chr4 137933160 137933355 -17696765 + B3 SINE B2 7 209 -7 1 1637 580 203 22 29 chr4 137933405 137933542 -17696578 - B1F SINE Alu 0 149 14 1 1637 1678 107 88 0 chr4 137933895 137934167 -17695953 + ORR1A3 LTR MaLR 1 296 -30 1 1637 282 87 0 0 chr4 137934342 137934388 -17695732 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1637 994 116 0 7 chr4 137934388 137934528 -17695592 - B1_Mus1 SINE Alu -8 140 1 1 1637 357 294 23 0 chr4 137934529 137934648 -17695472 - PB1D7 SINE Alu 0 149 21 1 1637 569 264 14 28 chr4 137934770 137934914 -17695206 + RSINE1 SINE B4 3 144 -21 1 1637 924 275 39 95 chr4 137935658 137936048 -17694072 + MTE2a LTR MaLR 4 371 -8 1 1637 216 0 0 0 chr4 137936105 137936129 -17693991 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1637 716 0 12 0 chr4 137936608 137936692 -17693428 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 1637 602 158 0 0 chr4 137936707 137936808 -17693312 - B1_Mus1 SINE Alu -35 113 13 1 1637 325 314 0 64 chr4 137937743 137937852 -17692268 + RSINE1 SINE B4 3 104 -61 1 1637 313 165 76 30 chr4 137937979 137938110 -17692010 + (TA)n Simple_repeat Simple_repeat 2 138 0 1 1637 225 316 0 0 chr4 137938234 137938310 -17691810 - ID_B1 SINE B4 -1 223 148 1 1637 627 234 14 14 chr4 137938341 137938488 -17691632 - B1_Mur2 SINE Alu -2 147 1 1 1637 827 219 48 14 chr4 137938491 137938699 -17691421 - B3 SINE B2 0 216 2 1 1637 1052 80 0 7 chr4 137939391 137939542 -17690578 - B2_Mm2 SINE B2 -44 151 2 1 1637 536 225 0 37 chr4 137940111 137940245 -17689875 - ID_B1 SINE B4 -7 217 89 1 1637 916 264 133 16 chr4 137940437 137940760 -17689360 + MTEa LTR MaLR 19 379 0 1 1637 694 289 19 58 chr4 137941175 137941284 -17688836 - MLT1K LTR MaLR -268 327 232 1 1637 942 271 38 68 chr4 137941284 137941652 -17688468 + ORR1E LTR MaLR 3 359 0 1 1637 694 289 19 58 chr4 137941652 137941803 -17688317 - MLT1K LTR MaLR -364 231 78 1 1637 309 309 54 47 chr4 137941821 137941950 -17688170 + B4 SINE B4 75 204 -88 1 1637 659 169 15 61 chr4 137941849 137941981 -17688139 + B1_Mur1 SINE Alu 13 138 -11 1 1637 284 278 0 0 chr4 137942035 137942107 -17688013 - MLT1J1 LTR MaLR -158 286 215 1 1637 2127 148 58 24 chr4 137942297 137942678 -17687442 - ORR1B1 LTR MaLR 0 394 1 1 1637 290 302 158 45 chr4 137942902 137943079 -17687041 - ORR1E LTR MaLR -98 261 65 1 1637 213 39 0 0 chr4 137943199 137943225 -17686895 + (CTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1637 723 156 7 62 chr4 137943226 137943370 -17686750 - B1_Mus1 SINE Alu -12 136 1 1 1637 1901 157 31 17 chr4 137943455 137943812 -17686308 - ORR1D1 LTR MaLR -8 366 5 1 1637 440 252 19 0 chr4 137943805 137943912 -17686208 - ORR1D1 LTR MaLR -44 326 218 1 1637 475 289 66 0 chr4 137943926 137944078 -17686042 - ORR1D1 LTR MaLR -212 162 1 1 1637 721 168 59 26 chr4 137944220 137944453 -17685667 - MTD LTR MaLR -8 411 67 1 1637 580 132 0 0 chr4 137944475 137944566 -17685554 + B1_Mur3 SINE Alu 9 99 -50 1 1637 525 32 0 0 chr4 137944566 137944629 -17685491 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 1637 1098 62 0 0 chr4 137944629 137944774 -17685346 - B2_Mm2 SINE B2 -36 159 15 1 1637 279 228 0 0 chr4 137944777 137944834 -17685286 + B1_Mus2 SINE Alu 89 145 -2 1 1637 687 35 0 0 chr4 137945220 137945306 -17684814 + (TTCA)n Simple_repeat Simple_repeat 4 89 0 1 1637 408 289 48 124 chr4 137945373 137945472 -17684648 + B4A SINE B4 41 140 -152 1 1637 2004 150 60 14 chr4 137945472 137945823 -17684297 - ORR1B2 LTR MaLR 0 367 1 1 1637 408 289 48 124 chr4 137945823 137945955 -17684165 + B4A SINE B4 141 263 -29 1 1637 579 66 0 0 chr4 137945955 137946031 -17684089 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1637 408 289 48 124 chr4 137946031 137946071 -17684049 + B4A SINE B4 264 292 0 1 1637 335 335 92 0 chr4 137946964 137947128 -17682992 - L2c LINE L2 -225 3162 2984 1 1637 697 190 7 21 chr4 137947431 137947576 -17682544 + B1F2 SINE Alu 2 144 -5 1 1637 984 99 21 0 chr4 137947631 137947773 -17682347 + B1_Mus2 SINE Alu 3 147 0 1 1637 718 168 15 8 chr4 137947990 137948122 -17681998 - B1_Mur2 SINE Alu -7 142 10 1 1637 403 239 0 11 chr4 137948122 137948211 -17681909 + B1F SINE Alu 24 111 -38 1 1637 754 67 244 0 chr4 137948836 137948955 -17681165 - B1_Mus1 SINE Alu 0 148 1 1 1637 1100 70 0 0 chr4 137949445 137949587 -17680533 + B1_Mus1 SINE Alu 1 142 -6 1 1637 32 0 0 0 chr4 137949594 137949626 -17680494 + AT_rich Low_complexity Low_complexity 1 32 0 1 1637 234 81 0 0 chr4 137951098 137951135 -17678985 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1637 1148 68 0 0 chr4 137953472 137953619 -17676501 + B1_Mus2 SINE Alu 1 147 0 1 1637 1314 76 16 21 chr4 137953629 137953818 -17676302 + B2_Mm2 SINE B2 1 188 -7 1 1637 312 284 155 16 chr4 137953864 137953993 -17676127 - B1_Mur1 SINE Alu -2 147 1 1 1637 594 213 0 0 chr4 137954058 137954166 -17675954 + PB1D9 SINE Alu 1 108 -12 1 1637 247 250 0 107 chr4 137954074 137954177 -17675943 + MT2B LTR ERVL 181 272 -329 1 1637 296 115 316 17 chr4 137954466 137954580 -17675540 - B2_Mm2 SINE B2 -1 194 47 1 1637 1177 81 29 0 chr4 137954645 137954819 -17675301 - B2_Mm1a SINE B2 -14 179 1 1 1637 570 270 10 70 chr4 137954822 137955021 -17675099 - B3A SINE B2 -4 194 8 1 1637 1021 58 31 7 chr4 137955288 137955444 -17674676 + B2_Mm2 SINE B2 28 188 -7 1 1637 296 283 9 23 chr4 137955463 137955570 -17674550 - B4A SINE B4 -191 101 2 1 1637 330 87 0 0 chr4 137955579 137955625 -17674495 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 1 1637 2129 145 73 5 chr4 137955637 137956018 -17674102 + MTC LTR MaLR 1 407 -14 1 1637 577 227 62 0 chr4 137956025 137956153 -17673967 - B1_Mur1 SINE Alu -11 138 3 1 1637 957 246 257 43 chr4 137956256 137956672 -17673448 - RLTR16 LTR ERVK 0 505 1 1 1637 842 269 109 23 chr4 137956728 137956777 -17673343 - B4 SINE B4 -3 289 229 1 1637 1392 53 20 36 chr4 137956777 137956807 -17673313 - B2_Mm1a SINE B2 0 193 161 1 1637 508 172 81 0 chr4 137956807 137956906 -17673214 - PB1D9 SINE Alu -13 107 1 1 1637 251 0 0 56 chr4 137956910 137956946 -17673174 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1637 1392 53 20 36 chr4 137956946 137957105 -17673015 - B2_Mm1a SINE B2 -33 160 2 1 1637 842 269 109 23 chr4 137957105 137957321 -17672799 - B4 SINE B4 -64 228 6 1 1637 384 326 70 55 chr4 137957350 137957766 -17672354 - HAL1 LINE L1 -335 2172 1751 1 1637 702 211 13 13 chr4 137957829 137957978 -17672142 - B1_Mur1 SINE Alu 0 149 1 1 1637 216 67 0 0 chr4 137957984 137958014 -17672106 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1637 832 10 0 0 chr4 137958106 137958209 -17671911 - B1_Mm SINE Alu 0 147 45 1 1637 294 176 56 42 chr4 137958155 137958226 -17671894 - RLTR25A LTR ERVK -531 572 501 1 1637 102 51 0 0 chr4 137958227 137958385 -17671735 + AT_rich Low_complexity Low_complexity 1 158 0 1 1637 458 338 14 0 chr4 137958422 137958564 -17671556 - RSINE1 SINE B4 -19 146 3 1 1637 313 315 19 0 chr4 137958571 137958679 -17671441 - PB1D10 SINE Alu -3 114 5 1 1637 316 280 66 6 chr4 137958687 137958891 -17671229 - L1M3 LINE L1 -985 5155 4943 1 1637 324 102 0 0 chr4 137958946 137958995 -17671125 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1637 1002 183 12 0 chr4 137959003 137959172 -17670948 - B3 SINE B2 -44 172 2 1 1637 1347 70 5 16 chr4 137959208 137959398 -17670722 + B2_Mm1a SINE B2 1 188 -5 1 1637 202 146 0 24 chr4 137959419 137959461 -17670659 + T-rich Low_complexity Low_complexity 1 41 0 1 1637 668 131 32 24 chr4 137959497 137959622 -17670498 - B1_Mur4 SINE Alu -20 130 5 1 1637 906 191 94 100 chr4 137959648 137959692 -17670428 - L1M3 LINE L1 -1534 4606 4563 1 1637 918 152 176 10 chr4 137959692 137959885 -17670235 - URR1A DNA MER1_type 0 226 2 1 1637 906 191 94 100 chr4 137959885 137959982 -17670138 - L1M3 LINE L1 -1578 4562 4474 1 1637 441 0 0 0 chr4 137959982 137960031 -17670089 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1637 906 191 94 100 chr4 137960031 137960044 -17670076 - L1M3 LINE L1 -1667 4473 4472 1 1637 617 269 179 0 chr4 137960044 137960278 -17669842 - B4 SINE B4 -16 276 1 1 1637 906 191 94 100 chr4 137960278 137960481 -17669639 - L1M3 LINE L1 -1669 4471 4249 1 1637 368 183 103 28 chr4 137961259 137961366 -17668754 + PB1D10 SINE Alu 2 116 -1 1 1637 520 211 0 27 chr4 137961455 137961567 -17668553 + B1F2 SINE Alu 4 112 -37 1 1637 412 61 0 0 chr4 137961574 137961640 -17668480 - B2_Mm1a SINE B2 -1 192 127 1 1637 883 232 35 10 chr4 137961711 137961911 -17668209 + ID_B1 SINE B4 3 207 -17 1 1637 261 0 0 0 chr4 137961915 137961944 -17668176 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1 1637 423 0 0 0 chr4 137962031 137962078 -17668042 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1637 917 166 193 0 chr4 137962120 137962301 -17667819 - B3 SINE B2 0 216 1 1 1637 322 324 99 11 chr4 137962389 137962655 -17667465 + MLT1F1 LTR MaLR 9 307 -262 1 1637 379 291 43 29 chr4 137962714 137962852 -17667268 + MLT1F1 LTR MaLR 414 553 -16 1 1637 259 187 69 99 chr4 137963190 137963291 -17666829 + L2a LINE L2 3297 3394 -32 1 1637 565 248 15 8 chr4 137963305 137963435 -17666685 - B1F SINE Alu -18 131 1 1 1637 210 238 0 0 chr4 137963490 137963532 -17666588 + MIR SINE MIR 203 244 -18 1 1637 1202 34 0 0 chr4 137963710 137963857 -17666263 - B1_Mm SINE Alu 0 147 1 1 1637 228 67 0 0 chr4 137964347 137964377 -17665743 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1637 664 279 19 69 chr4 137964452 137964668 -17665452 - B4A SINE B4 0 292 88 1 1637 339 241 2 6 chr4 137964802 137964881 -17665239 - B4A SINE B4 -85 80 3 1 1637 441 319 7 7 chr4 137965030 137965166 -17664954 - B1F SINE Alu -1 148 13 1 1637 284 215 15 0 chr4 137965309 137965374 -17664746 - ORR1D1 LTR MaLR -4 370 305 1 1637 356 179 46 120 chr4 137965365 137965473 -17664647 + MT2B LTR ERVL 157 256 -345 1 1637 808 157 7 7 chr4 137965384 137965519 -17664601 + B1_Mur4 SINE Alu 16 150 0 1 1637 188 246 0 14 chr4 137965526 137965596 -17664524 + GA-rich Low_complexity Low_complexity 2 70 0 1 1637 1293 83 0 0 chr4 137965596 137965776 -17664344 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1637 1019 182 64 152 chr4 137965776 137966119 -17664001 - ORR1D1 LTR MaLR -59 315 3 1 1637 390 298 228 0 chr4 137966267 137966438 -17663682 + B4 SINE B4 20 229 -63 1 1637 715 143 46 31 chr4 137966441 137966571 -17663549 + B1_Mur2 SINE Alu 5 136 -13 1 1637 705 273 12 18 chr4 137966707 137966875 -17663245 + ID_B1 SINE B4 46 212 -12 1 1637 198 191 0 0 chr4 137967635 137967682 -17662438 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1637 649 307 19 14 chr4 137967684 137967899 -17662221 + ID_B1 SINE B4 8 223 -1 1 1637 213 39 0 0 chr4 137967916 137967942 -17662178 + (CCA)n Simple_repeat Simple_repeat 2 27 0 1 1637 920 132 7 0 chr4 137968134 137968278 -17661842 + B1_Mus2 SINE Alu 3 147 0 1 1637 213 281 0 30 chr4 137968630 137968696 -17661424 + C-rich Low_complexity Low_complexity 3 66 0 1 1637 369 242 21 10 chr4 137968980 137969076 -17661044 - RSINE1 SINE B4 -66 99 3 1 1637 709 237 69 11 chr4 137969150 137969325 -17660795 - MLT1D LTR MaLR -10 495 311 1 1637 636 14 0 0 chr4 137969445 137969518 -17660602 + (TTC)n Simple_repeat Simple_repeat 1 73 0 1 1637 1362 74 5 16 chr4 137969525 137969717 -17660403 - B2_Mm1a SINE B2 -3 190 1 1 1637 297 0 0 0 chr4 137969722 137969755 -17660365 + (TTC)n Simple_repeat Simple_repeat 1 33 0 1 1637 1329 73 0 0 chr4 137969755 137969933 -17660187 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 1637 804 94 15 66 chr4 137969948 137970085 -17660035 - B1_Mur2 SINE Alu 0 149 20 1 1637 424 194 15 46 chr4 137970094 137970277 -17659843 - B4 SINE B4 -62 230 3 1 1637 262 309 0 12 chr4 137970429 137970511 -17659609 - MLT1E2 LTR MaLR -544 83 3 1 1637 447 301 159 43 chr4 137970742 137971297 -17658823 + L2a LINE L2 1433 2051 -1368 1 1637 280 373 53 0 chr4 137971867 137972036 -17658084 + L2a LINE L2 3016 3193 -233 1 1637 655 282 71 128 chr4 137972226 137972678 -17657442 + RLTR23 LTR ERV1 5 430 0 1 1637 1319 253 77 3 chr4 137972678 137973039 -17657081 - RMER20A LTR ERVK -117 399 12 1 1637 316 289 41 0 chr4 137973133 137973230 -17656890 - PB1D7 SINE Alu -19 101 1 1 1637 234 81 0 0 chr4 137973275 137973312 -17656808 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1637 404 279 65 71 chr4 137973318 137973385 -17656735 - B4A SINE B4 -6 286 230 1 1637 366 114 0 0 chr4 137973385 137973455 -17656665 + (TTAG)n Simple_repeat Simple_repeat 3 72 0 1 1637 1158 68 0 0 chr4 137973455 137973603 -17656517 - B1_Mus1 SINE Alu 0 148 1 1 1637 404 279 65 71 chr4 137973603 137973704 -17656416 - B4A SINE B4 -63 229 119 1 1637 1820 129 55 25 chr4 137973704 137974029 -17656091 - ORR1B1 LTR MaLR 0 394 60 1 1637 381 279 58 0 chr4 137974038 137974142 -17655978 - B4A SINE B4 -180 112 3 1 1637 352 182 86 57 chr4 137974170 137974275 -17655845 - PB1D9 SINE Alu -12 108 1 1 1637 189 296 48 36 chr4 137975208 137975292 -17654828 - L2c LINE L2 -13 3374 3290 1 1637 266 301 12 12 chr4 137975947 137976031 -17654089 - L2a LINE L2 -1 3425 3342 1 1637 420 71 0 0 chr4 137976302 137976358 -17653762 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 1 1637 589 227 76 0 chr4 137976381 137976500 -17653620 - B1_Mur1 SINE Alu -18 131 4 1 1637 364 324 14 7 chr4 137976529 137976675 -17653445 - B4A SINE B4 -44 248 102 1 1637 275 267 192 29 chr4 137976787 137976891 -17653229 - RSINE1 SINE B4 0 165 45 1 1637 1102 257 103 57 chr4 137976904 137977329 -17652791 + RMER13A LTR ERVK 9 453 -407 1 1637 2854 98 19 0 chr4 137977505 137977924 -17652196 - MERVK26-int LTR ERVK -1693 5226 4800 1 1637 1361 257 36 55 chr4 137978183 137978408 -17651712 - MTD LTR MaLR -2 417 196 1 1637 1008 108 7 0 chr4 137978408 137978556 -17651564 - B1_Mur4 SINE Alu 0 150 2 1 1637 1361 257 36 55 chr4 137978556 137978750 -17651370 - MTD LTR MaLR -224 195 6 1 1637 397 202 139 20 chr4 137978801 137978902 -17651218 - B3A SINE B2 -80 118 6 1 1637 2246 90 9 9 chr4 137979202 137979528 -17650592 + ORR1A3 LTR MaLR 1 326 0 1 1637 387 268 22 82 chr4 137979545 137979679 -17650441 - RLTR24 LTR ERV1 -73 456 331 1 1637 420 262 105 29 chr4 137979806 137980098 -17650022 + RLTR15 LTR ERVK 48 498 -30 1 1637 238 286 31 132 chr4 137980106 137980172 -17649948 - RLTR24 LTR ERV1 -413 116 62 1 1637 834 180 202 0 chr4 137980172 137980350 -17649770 - B3 SINE B2 -1 215 2 1 1637 238 286 31 132 chr4 137980350 137980412 -17649708 - RLTR24 LTR ERV1 -468 61 1 1 1637 181 300 20 0 chr4 137980570 137980620 -17649500 - MIRb SINE MIR -99 169 119 1 1637 1684 214 61 124 chr4 137980666 137981125 -17648995 + RMER1B Other Other 1 430 -636 1 1637 1583 151 47 20 chr4 137981126 137981424 -17648696 + RMER1B Other Other 750 1055 -11 1 1637 267 104 0 0 chr4 137981426 137981474 -17648646 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 1 1637 427 328 8 8 chr4 137981482 137981614 -17648506 + ID_B1 SINE B4 82 213 -11 1 1637 267 31 0 0 chr4 137981958 137981990 -17648130 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1637 222 118 0 0 chr4 137981994 137982028 -17648092 + (CCA)n Simple_repeat Simple_repeat 2 35 0 1 1637 471 233 16 152 chr4 137982315 137982558 -17647562 + ID_B1 SINE B4 2 211 -13 1 1637 912 44 0 0 chr4 137982558 137982671 -17647449 + (CAAAC)n Simple_repeat Simple_repeat 1 113 0 1 1637 701 277 87 5 chr4 137983073 137983269 -17646851 + ID_B1 SINE B4 8 219 -5 1 1637 733 200 7 7 chr4 137983520 137983661 -17646459 - B1_Mur1 SINE Alu -8 141 1 1 1637 278 153 35 12 chr4 137983800 137983871 -17646249 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1637 1661 122 153 35 chr4 137983871 137984055 -17646065 + RMER17C LTR ERVK 1 184 -226 1 1637 666 85 0 0 chr4 137984055 137984149 -17645971 + (TCTCCC)n Simple_repeat Simple_repeat 2 95 0 1 1637 1661 122 153 35 chr4 137984149 137984331 -17645789 + RMER17C LTR ERVK 185 410 0 1 1637 278 153 35 12 chr4 137984331 137984345 -17645775 + (TG)n Simple_repeat Simple_repeat 1 14 0 1 1637 792 132 31 25 chr4 137984369 137984690 -17645430 + (TG)n Simple_repeat Simple_repeat 1 323 0 1 1637 390 285 292 14 chr4 137984740 137984952 -17645168 - B4A SINE B4 -20 272 2 1 1637 379 294 101 26 chr4 137984955 137985144 -17644976 + L1MC LINE L1 5080 5282 -864 1 1637 555 146 0 0 chr4 137985159 137985241 -17644879 + ID4_ SINE ID 2 83 0 1 1637 292 261 87 0 chr4 137985279 137985371 -17644749 + PB1 SINE Alu 1 100 -27 1 1637 445 215 80 37 chr4 137985800 137985964 -17644156 + B3 SINE B2 1 192 -6 1 1637 469 231 141 0 chr4 137986123 137986244 -17643876 + RSINE1 SINE B4 9 146 -19 1 1637 646 131 111 37 chr4 137986294 137986429 -17643691 - B1_Mur3 SINE Alu 0 149 5 1 1637 61 0 0 0 chr4 137986439 137986500 -17643620 + AT_rich Low_complexity Low_complexity 1 61 0 1 1637 218 282 127 0 chr4 137986502 137986573 -17643547 + ID4_ SINE ID 3 82 -1 1 1637 223 67 67 0 chr4 137986654 137986699 -17643421 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1637 1152 48 0 20 chr4 137986699 137986849 -17643271 - B1_Mus1 SINE Alu -1 147 1 1 1637 776 147 267 12 chr4 137986875 137987047 -17643073 - B3 SINE B2 0 216 1 1 1637 425 315 0 30 chr4 137987935 137988069 -17642051 + ID_B1 SINE B4 93 222 -2 1 1637 414 261 130 8 chr4 137988119 137988250 -17641870 + B1_Mur1 SINE Alu 2 148 -1 1 1637 407 260 87 31 chr4 137988878 137989005 -17641115 - RSINE1 SINE B4 -20 145 12 1 1637 727 130 17 0 chr4 137989399 137989514 -17640606 - B1_Mur3 SINE Alu -2 147 31 1 1637 369 269 24 32 chr4 137989424 137989547 -17640573 - MT2B LTR ERVL -323 278 157 1 1637 185 191 0 45 chr4 137989700 137989744 -17640376 + L2a LINE L2 3374 3415 -11 1 1637 290 132 0 19 chr4 137989941 137989995 -17640125 + CT-rich Low_complexity Low_complexity 2 54 0 1 1637 1052 43 65 0 chr4 137989995 137990133 -17639987 - B1_Mm SINE Alu 0 147 1 1 1637 358 313 27 7 chr4 137990261 137990409 -17639711 + RSINE1 SINE B4 3 153 -12 1 1637 608 283 128 29 chr4 137991146 137991494 -17638626 - MTE2a LTR MaLR -9 370 18 1 1637 460 193 108 18 chr4 137991759 137991870 -17638250 + B3 SINE B2 95 215 -1 1 1637 180 97 0 0 chr4 137992430 137992461 -17637659 + (CCAA)n Simple_repeat Simple_repeat 3 33 0 1 1637 2201 79 9 12 chr4 137992740 137993059 -17637061 - ORR1A2 LTR MaLR -9 318 1 1 1637 285 197 33 0 chr4 137993769 137993830 -17636290 - RSINE1 SINE B4 -21 144 82 1 1637 440 163 12 0 chr4 137995972 137996058 -17634062 + CT-rich Low_complexity Low_complexity 2 88 0 1 1637 341 203 16 12 chr4 137996923 137996996 -17633124 + PB1D9 SINE Alu 50 117 -32 1 1637 349 344 100 17 chr4 137997931 137998162 -17631958 - MER2 DNA MER2_type 0 345 96 1 1637 383 315 0 9 chr4 137998686 137998798 -17631322 - MLT1A1 LTR MaLR -2 406 296 1 1637 755 245 50 10 chr4 137999030 137999228 -17630892 + B3 SINE B2 1 206 -10 1 1637 245 286 22 11 chr4 137999231 137999323 -17630797 + (CATA)n Simple_repeat Simple_repeat 2 94 0 1 1637 268 241 101 0 chr4 137999904 137999983 -17630137 - PB1D10 SINE Alu -8 109 23 1 1637 209 335 97 2 chr4 138000004 138000129 -17629991 - MIR SINE MIR -67 141 2 1 1637 528 213 122 8 chr4 138000263 138000386 -17629734 - MTEb LTR MaLR -233 146 10 2 1637 2134 278 166 34 chr4 138000387 138001282 -17628838 - MTEb-int LTR MaLR -2 1578 565 2 1637 1566 259 64 29 chr4 138001293 138001778 -17628342 - MTEb-int LTR MaLR -1078 502 1 2 1637 980 239 50 19 chr4 138001778 138002038 -17628082 - MTEb LTR MaLR 0 379 112 2 1637 625 101 10 0 chr4 138002113 138002212 -17627908 + URR1B DNA MER1_type 99 198 -27 3 1637 225 89 133 0 chr4 138002223 138002268 -17627852 - MTEb LTR MaLR -328 51 1 2 1637 377 235 0 64 chr4 138002552 138002661 -17627459 - PB1D10 SINE Alu 0 117 16 4 1637 222 306 47 0 chr4 138002680 138002765 -17627355 + MIR3 SINE MIR 108 196 -12 5 1637 228 295 0 51 chr4 138004041 138004159 -17625961 + C-rich Low_complexity Low_complexity 5 116 0 6 1637 205 288 27 14 chr4 138004521 138004595 -17625525 - MIR3 SINE MIR -52 156 82 7 1637 212 302 73 36 chr4 138005099 138005209 -17624911 + MIRb SINE MIR 62 175 -93 8 1637 587 239 192 11 chr4 138005407 138005589 -17624531 - B3 SINE B2 0 216 2 9 1637 226 304 0 0 chr4 138005904 138005960 -17624160 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1637 283 290 40 0 chr4 138006660 138006671 -17623449 + ID_B1 SINE B4 81 182 -40 1 1637 391 186 58 11 chr4 138006671 138006758 -17623362 + PB1D10 SINE Alu 11 101 -16 1 1637 276 30 0 0 chr4 138006761 138006794 -17623326 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1637 301 175 51 7 chr4 138006800 138006938 -17623182 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1637 459 0 0 0 chr4 138006941 138006992 -17623128 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1637 496 221 115 0 chr4 138006992 138007096 -17623024 + PB1D9 SINE Alu 2 117 -3 1 1637 226 182 23 0 chr4 138007154 138007198 -17622922 - MIR SINE MIR -2 260 216 1 1637 418 299 71 106 chr4 138007282 138007536 -17622584 - ORR1E LTR MaLR -15 344 100 1 1637 352 250 0 12 chr4 138008029 138008110 -17622010 - ID4 SINE ID -2 81 2 1 1637 297 310 95 48 chr4 138008382 138008592 -17621528 + MIRc SINE MIR 37 256 -12 2 1637 266 67 0 22 chr4 138010098 138010144 -17619976 + (CGGGG)n Simple_repeat Simple_repeat 4 48 0 2 1637 335 308 12 43 chr4 138010344 138010507 -17619613 + CT-rich Low_complexity Low_complexity 1 158 0 2 1637 208 87 20 61 chr4 138010558 138010607 -17619513 + CT-rich Low_complexity Low_complexity 2 48 0 2 1637 33 43 0 0 chr4 138010762 138010809 -17619311 + GC_rich Low_complexity Low_complexity 1 47 0 2 1637 267 93 0 0 chr4 138012886 138012929 -17617191 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2 1637 207 182 0 0 chr4 138012929 138012962 -17617158 + (TGG)n Simple_repeat Simple_repeat 1 33 0 2 1637 180 167 0 0 chr4 138012991 138013039 -17617081 + A-rich Low_complexity Low_complexity 1 48 0 2 1637 183 296 172 10 chr4 138014298 138014397 -17615723 + MIRc SINE MIR 29 143 -125 2 1637 246 309 65 0 chr4 138015549 138015672 -17614448 - MIRb SINE MIR -83 185 55 2 1637 2173 164 9 38 chr4 138017226 138017651 -17612469 + MTC LTR MaLR 1 413 -8 2 1637 403 307 20 41 chr4 138017798 138017944 -17612176 + RSINE1 SINE B4 4 146 -19 3 1637 619 334 39 57 chr4 138017991 138018340 -17611780 - L1MC3 LINE L1 -43 7742 7408 3 1637 679 275 13 84 chr4 138018340 138018578 -17611542 - ID_B1 SINE B4 -3 221 1 3 1637 619 334 39 57 chr4 138018578 138018685 -17611435 - L1MC3 LINE L1 -378 7407 7294 3 1638 510 17 0 0 chr4 138019397 138019456 -17610664 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 3 1638 180 0 0 0 chr4 138020218 138020238 -17609882 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1638 297 300 0 39 chr4 138020301 138020405 -17609715 - MIRb SINE MIR -79 189 90 3 1638 220 91 22 22 chr4 138020950 138020995 -17609125 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 3 1638 246 354 43 36 chr4 138021317 138021524 -17608596 - MIR SINE MIR -41 221 19 3 1638 21 0 0 0 chr4 138022001 138022022 -17608098 + AT_rich Low_complexity Low_complexity 1 21 0 3 1638 457 281 88 46 chr4 138022508 138022702 -17607418 - ID_B1 SINE B4 -16 208 7 3 1638 285 275 62 0 chr4 138022724 138022804 -17607316 + MER20 DNA MER1_type 1 85 -134 4 1638 196 299 101 20 chr4 138023292 138023391 -17606729 - MIRm SINE MIR -84 192 86 4 1638 920 235 93 39 chr4 138023994 138024299 -17605821 - MTE2a LTR MaLR -39 382 45 4 1638 1208 68 0 0 chr4 138024405 138024552 -17605568 - B1_Mus1 SINE Alu 0 148 2 4 1638 247 258 78 49 chr4 138024943 138025045 -17605075 - MIRc SINE MIR 0 268 164 4 1638 626 213 0 0 chr4 138025498 138025620 -17604500 + ID_B1 SINE B4 96 217 -7 4 1638 666 159 75 61 chr4 138026143 138026290 -17603830 - B1_Mur2 SINE Alu 0 149 1 4 1638 346 127 93 53 chr4 138026290 138026354 -17603766 - B1F SINE Alu -10 139 69 4 1638 216 0 0 0 chr4 138026447 138026471 -17603649 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 4 1638 405 0 0 0 chr4 138026471 138026516 -17603604 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1638 591 209 118 15 chr4 138026517 138026653 -17603467 - RSINE1 SINE B4 -13 152 3 5 1638 329 212 14 204 chr4 138026656 138026759 -17603361 - ID_B1 SINE B4 -70 154 79 5 1638 315 0 0 0 chr4 138026759 138026794 -17603326 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1638 329 212 14 204 chr4 138026794 138026832 -17603288 - ID SINE ID -146 78 40 5 1638 493 255 12 105 chr4 138027578 138027777 -17602343 - B3A SINE B2 -6 187 2 5 1638 360 288 59 8 chr4 138027966 138028085 -17602035 - PB1 SINE Alu 0 127 3 5 1638 204 170 0 0 chr4 138028162 138028215 -17601905 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 5 1638 207 146 0 0 chr4 138028274 138028315 -17601805 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 5 1638 714 206 25 91 chr4 138028509 138028642 -17601478 + B2_Mm2 SINE B2 1 126 -69 5 1638 492 93 0 0 chr4 138028642 138028717 -17601403 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1638 714 206 25 91 chr4 138028717 138028781 -17601339 + B2_Mm2 SINE B2 127 185 -10 5 1638 240 376 60 33 chr4 138028806 138028990 -17601130 + MIRb SINE MIR 2 190 -78 5 1638 342 0 0 0 chr4 138029743 138029781 -17600339 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1638 283 262 12 48 chr4 138029929 138030013 -17600107 + ID4 SINE ID 1 81 -2 6 1638 547 259 109 6 chr4 138030950 138031034 -17599086 - MTD LTR MaLR -226 193 93 6 1638 510 17 0 0 chr4 138031034 138031093 -17599027 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1638 547 259 109 6 chr4 138031093 138031183 -17598937 - MTD LTR MaLR -327 92 1 6 1638 328 284 220 47 chr4 138031183 138031516 -17598604 - MLT2F LTR ERVL -257 406 12 6 1638 699 282 108 10 chr4 138032011 138032215 -17597905 + ID_B1 SINE B4 1 224 0 6 1638 1090 96 0 22 chr4 138033002 138033183 -17596937 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 6 1638 909 104 0 0 chr4 138033692 138033827 -17596293 + (TCTA)n Simple_repeat Simple_repeat 1 135 0 6 1638 1530 216 70 29 chr4 138033830 138034216 -17595904 + MTD LTR MaLR 18 419 0 6 1638 363 328 70 0 chr4 138034760 138034909 -17595211 + MIRc SINE MIR 46 208 -60 6 1638 498 250 6 70 chr4 138034912 138035084 -17595036 - HAL1-2a_MD LINE L1 -532 2492 2332 6 1638 377 274 6 78 chr4 138035085 138035251 -17594869 - HAL1-2a_MD LINE L1 -525 2499 2346 6 1638 1018 296 36 7 chr4 138036312 138036588 -17593532 + B4A SINE B4 5 288 -4 7 1638 229 178 38 47 chr4 138037250 138037356 -17592764 + (CATA)n Simple_repeat Simple_repeat 3 107 0 7 1638 237 242 40 90 chr4 138037369 138037546 -17592574 - RLTR21 LTR ERVK -320 1252 1085 7 1638 234 174 36 57 chr4 138037555 138037695 -17592425 + (CATA)n Simple_repeat Simple_repeat 3 139 0 7 1638 261 253 60 12 chr4 138038154 138038238 -17591882 - MIRb SINE MIR -88 180 93 7 1638 304 257 13 26 chr4 138038292 138038368 -17591752 - RSINE1 SINE B4 0 165 91 7 1638 379 214 103 0 chr4 138038563 138038680 -17591440 - Lx6 LINE L1 -16 7444 7316 7 1638 563 204 71 0 chr4 138039547 138039660 -17590460 - B1_Mus2 SINE Alu -1 146 26 7 1638 261 0 0 0 chr4 138039670 138039699 -17590421 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1638 372 22 0 0 chr4 138039699 138039743 -17590377 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1638 609 215 19 89 chr4 138039976 138040134 -17589986 + B1_Mur1 SINE Alu 1 147 -2 8 1638 200 169 14 58 chr4 138040135 138040204 -17589916 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 8 1638 637 269 11 28 chr4 138040211 138040387 -17589733 + B3 SINE B2 1 173 -43 8 1638 358 254 0 0 chr4 138040389 138040460 -17589660 + B4A SINE B4 220 290 -2 8 1638 890 197 49 5 chr4 138040534 138040718 -17589402 + B2_Mm2 SINE B2 2 193 -2 8 1638 207 0 0 0 chr4 138040990 138041013 -17589107 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1638 681 13 0 0 chr4 138041013 138041090 -17589030 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1638 804 276 10 10 chr4 138041147 138041348 -17588772 - B4A SINE B4 -91 201 1 8 1638 978 235 10 0 chr4 138041375 138041575 -17588545 - B3 SINE B2 0 216 15 8 1638 558 178 15 8 chr4 138042487 138042583 -17587537 + polypyrimidine Low_complexity Low_complexity 37 133 0 8 1638 1329 73 0 0 chr4 138042583 138042761 -17587359 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 9 1638 558 178 15 8 chr4 138042761 138042794 -17587326 + polypyrimidine Low_complexity Low_complexity 3 36 0 9 1638 1028 138 84 0 chr4 138042802 138042969 -17587151 - B2_Mm2 SINE B2 -14 181 1 9 1638 817 269 27 14 chr4 138043074 138043293 -17586827 + ID_B1 SINE B4 2 223 -1 9 1638 201 288 47 59 chr4 138043615 138043700 -17586420 + MIRc SINE MIR 88 171 -97 9 1638 292 317 131 35 chr4 138043734 138044048 -17586072 - L2b LINE L2 -9 3366 3023 9 1638 1204 153 93 15 chr4 138045073 138045278 -17584842 - URR1A DNA MER1_type -1 225 5 9 1638 261 236 0 0 chr4 138045478 138045533 -17584587 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1638 870 285 25 21 chr4 138045533 138045773 -17584347 - B4 SINE B4 0 292 52 9 1638 372 169 0 0 chr4 138045777 138045854 -17584266 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1638 294 221 14 14 chr4 138045958 138046027 -17584093 - ID4 SINE ID -13 70 2 1 1638 323 397 0 0 chr4 138046087 138046203 -17583917 - MIR SINE MIR -119 143 28 1 1638 567 259 65 102 chr4 138046316 138046591 -17583529 + B4 SINE B4 1 265 -27 1 1638 450 0 0 0 chr4 138046604 138046654 -17583466 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1638 495 0 0 0 chr4 138046886 138046941 -17583179 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1638 221 0 35 0 chr4 138047225 138047254 -17582866 + (CAGG)n Simple_repeat Simple_repeat 4 33 0 1 1638 24 0 0 0 chr4 138047543 138047567 -17582553 + AT_rich Low_complexity Low_complexity 1 24 0 1 1638 690 252 79 25 chr4 138047611 138047814 -17582306 - B3 SINE B2 -1 215 2 1 1638 1085 55 20 20 chr4 138047817 138047966 -17582154 - B1_Mur3 SINE Alu 0 149 1 1 1638 737 273 59 14 chr4 138047966 138048185 -17581935 - B4A SINE B4 -63 229 1 1 1638 1137 89 0 0 chr4 138048238 138048395 -17581725 + B2_Mm2 SINE B2 2 158 -37 1 1638 279 0 0 0 chr4 138048396 138048427 -17581693 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1638 232 327 131 0 chr4 138049082 138049189 -17580931 - MIR3 SINE MIR -49 159 39 1 1638 202 406 0 0 chr4 138049917 138050013 -17580107 + (CATG)n Simple_repeat Simple_repeat 3 98 0 1 1638 253 271 0 0 chr4 138049952 138050011 -17580109 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1638 375 41 0 0 chr4 138051355 138051404 -17578716 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1638 187 216 58 19 chr4 138052032 138052084 -17578036 + MIRc SINE MIR 112 165 -103 1 1638 423 0 0 0 chr4 138052518 138052565 -17577555 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1638 334 242 70 70 chr4 138053230 138053359 -17576761 + RSINE1 SINE B4 1 129 -36 1 1638 258 32 0 0 chr4 138053374 138053405 -17576715 + (CG)n Simple_repeat Simple_repeat 2 32 0 1 1638 378 0 0 0 chr4 138053405 138053446 -17576674 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1638 375 369 12 19 chr4 138053757 138053917 -17576203 - MLT1J LTR MaLR -253 259 101 1 1638 273 287 98 8 chr4 138053985 138054108 -17576012 + B4 SINE B4 2 135 -157 1 1638 1143 277 11 53 chr4 138054335 138054712 -17575408 - MTE2b LTR MaLR -2 377 17 1 1638 249 250 31 0 chr4 138054718 138054782 -17575338 - B1_Mur3 SINE Alu -23 126 61 1 1638 755 278 60 87 chr4 138054837 138054955 -17575165 - B4 SINE B4 0 292 185 1 1638 195 69 0 0 chr4 138054955 138054984 -17575136 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1638 755 278 60 87 chr4 138054984 138055164 -17574956 - B4 SINE B4 -108 184 2 1 1638 959 150 0 7 chr4 138055399 138055547 -17574573 + B1_Mus1 SINE Alu 1 147 -1 1 1638 397 226 205 24 chr4 138055717 138055844 -17574276 - MLT1K LTR MaLR -44 551 402 1 1638 331 320 15 30 chr4 138055848 138055980 -17574140 - MLT1K LTR MaLR -305 290 161 1 1638 545 205 60 0 chr4 138056399 138056516 -17573604 + B3 SINE B2 1 124 -92 1 1638 180 77 0 0 chr4 138056532 138056558 -17573562 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1638 1023 52 0 0 chr4 138056558 138056691 -17573429 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 1638 1130 68 7 0 chr4 138056724 138056871 -17573249 + B1_Mus1 SINE Alu 1 148 0 1 1638 736 213 169 5 chr4 138057244 138057433 -17572687 - ID_B1 SINE B4 -4 220 1 1 1638 244 270 44 0 chr4 138057480 138057562 -17572558 - MIR SINE MIR -130 138 52 1 1638 3286 62 5 15 chr4 138057825 138058236 -17571884 + MTB_Mm LTR MaLR 1 407 0 1 1638 633 27 0 0 chr4 138058461 138058536 -17571584 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 1 1638 1620 62 0 1 chr4 138058536 138059439 -17570681 + (TTC)n Simple_repeat Simple_repeat 1 902 0 1 1638 537 165 0 0 chr4 138059441 138059538 -17570582 + CT-rich Low_complexity Low_complexity 1 97 0 1 1638 375 285 198 0 chr4 138059538 138059710 -17570410 - LTR16A1 LTR ERVL -43 413 208 1 1638 604 204 0 9 chr4 138060370 138060484 -17569636 - ID_B1 SINE B4 -2 222 110 1 1638 496 225 69 15 chr4 138060484 138060501 -17569619 - B1F2 SINE Alu -2 147 10 1 1638 200 349 9 27 chr4 138061673 138061785 -17568335 + MIR SINE MIR 34 143 -119 1 1638 227 295 0 0 chr4 138061864 138061925 -17568195 - RSINE1 SINE B4 -103 62 2 1 1638 285 250 0 0 chr4 138062287 138062347 -17567773 - PB1D10 SINE Alu -9 108 49 1 1638 726 34 0 0 chr4 138062453 138062542 -17567578 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 1638 470 338 48 51 chr4 138062819 138063112 -17567008 - L1M4b LINE L1 -6673 661 370 1 1638 298 276 146 14 chr4 138063221 138063393 -17566727 - MTEa LTR MaLR 0 379 158 1 1638 585 0 0 0 chr4 138063510 138063575 -17566545 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1638 969 260 38 79 chr4 138063578 138063870 -17566250 - B4 SINE B4 0 292 13 1 1638 475 256 78 84 chr4 138063886 138064065 -17566055 - MTEa LTR MaLR -200 179 2 1 1638 445 268 127 0 chr4 138064065 138064222 -17565898 - L1M4b LINE L1 -7126 208 32 1 1638 384 77 0 0 chr4 138064635 138064687 -17565433 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1638 748 299 33 47 chr4 138064687 138064961 -17565159 - B4A SINE B4 -22 270 1 1 1638 572 316 73 10 chr4 138065145 138065337 -17564783 - B3 SINE B2 0 216 13 1 1638 486 0 0 0 chr4 138065411 138065465 -17564655 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1638 900 297 11 30 chr4 138065503 138065767 -17564353 + MTE2a LTR MaLR 74 332 -47 1 1638 186 43 0 0 chr4 138065880 138065903 -17564217 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 1638 243 61 0 0 chr4 138066324 138066357 -17563763 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 1 1638 303 341 14 69 chr4 138066363 138066508 -17563612 - RSINE1 SINE B4 -19 146 10 1 1638 416 352 24 65 chr4 138066916 138067256 -17562864 - L1MD3 LINE L1 -85 7910 7585 1 1638 1671 191 26 73 chr4 138067367 138067751 -17562369 - ORR1D1 LTR MaLR -8 366 1 1 1638 187 256 151 32 chr4 138067806 138067899 -17562221 - MIR SINE MIR -123 139 36 1 1638 339 362 20 0 chr4 138067976 138068125 -17561995 + L2a LINE L2 2923 3074 -345 1 1638 293 331 86 0 chr4 138068153 138068304 -17561816 + L2a LINE L2 3250 3413 -13 1 1638 868 198 139 0 chr4 138068305 138068492 -17561628 + ID_B1 SINE B4 12 224 0 1 1638 253 162 353 0 chr4 138069434 138069502 -17560618 - ID_B1 SINE B4 -15 209 118 1 1638 242 317 106 0 chr4 138070105 138070209 -17559911 + MIR3 SINE MIR 44 158 -50 1 1638 457 98 78 18 chr4 138070237 138070403 -17559717 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 1 1638 426 278 37 0 chr4 138070561 138070669 -17559451 - PB1 SINE Alu -11 116 5 1 1638 203 240 21 0 chr4 138070713 138070770 -17559350 + L2b LINE L2 3015 3073 -302 1 1638 494 273 64 82 chr4 138070770 138070788 -17559332 + CYRA11_Mm Unknown Y-chromosome 164 235 -382 1 1638 1052 166 73 5 chr4 138070788 138070994 -17559126 - URR1B DNA MER1_type -5 220 1 1 1638 494 273 64 82 chr4 138070994 138071037 -17559083 + CYRA11_Mm Unknown Y-chromosome 236 425 -192 1 1638 984 114 0 0 chr4 138071052 138071201 -17558919 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 1 1638 1096 58 7 28 chr4 138071203 138071345 -17558775 - B1_Mus1 SINE Alu -7 141 3 1 1638 326 87 356 19 chr4 138073801 138073902 -17556218 - B2_Mm2 SINE B2 -14 181 47 1 1638 1097 95 18 6 chr4 138073934 138074103 -17556017 - B2_Mm1t SINE B2 -14 179 9 1 1638 241 250 16 0 chr4 138074270 138074334 -17555786 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 1 1638 318 325 134 25 chr4 138074471 138074673 -17555447 - MER34A1 LTR ERV1 -177 410 187 1 1638 326 231 0 0 chr4 138074764 138074829 -17555291 - ID4 SINE ID -18 65 1 1 1638 248 239 28 14 chr4 138074885 138074957 -17555163 + CT-rich Low_complexity Low_complexity 1 73 0 1 1638 307 356 158 16 chr4 138074976 138075230 -17554890 - B4A SINE B4 -2 290 1 1 1638 1039 116 7 0 chr4 138076042 138076188 -17553932 + B1_Mus1 SINE Alu 2 148 0 1 1638 258 56 0 0 chr4 138076191 138076227 -17553893 + (CACAA)n Simple_repeat Simple_repeat 4 39 0 1 1638 654 274 206 8 chr4 138076235 138076478 -17553642 + B4 SINE B4 2 292 0 1 1638 396 0 0 0 chr4 138076529 138076573 -17553547 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1638 328 276 89 8 chr4 138076597 138076721 -17553399 + ORR1E LTR MaLR 4 137 -222 1 1638 281 348 22 0 chr4 138076945 138077034 -17553086 - MIR SINE MIR -160 102 12 1 1638 195 196 65 0 chr4 138077318 138077364 -17552756 + L2 LINE L2 438 486 -2933 1 1638 321 228 17 17 chr4 138077506 138077622 -17552498 + CT-rich Low_complexity Low_complexity 1 116 0 1 1638 794 11 11 0 chr4 138077625 138077720 -17552400 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 1 1638 487 238 131 24 chr4 138077739 138077907 -17552213 - B4 SINE B4 -105 187 2 1 1638 414 321 21 0 chr4 138077908 138078048 -17552072 + MIR SINE MIR 92 234 -28 1 1638 701 120 51 0 chr4 138079045 138079162 -17550958 + B1_Mus2 SINE Alu 1 123 -24 1 1638 372 174 11 21 chr4 138079186 138079280 -17550840 + CT-rich Low_complexity Low_complexity 1 93 0 1 1638 570 266 13 47 chr4 138079295 138079445 -17550675 - RSINE1 SINE B4 -9 156 12 1 1638 307 297 90 9 chr4 138079509 138079634 -17550486 + MIR SINE MIR 19 154 -54 1 1638 231 300 136 69 chr4 138079906 138080104 -17550016 - MIRb SINE MIR -32 236 36 1 1638 211 125 50 0 chr4 138080188 138080228 -17549892 + MIR SINE MIR 20 61 -201 1 1638 322 319 35 28 chr4 138080425 138080570 -17549550 - MIRb SINE MIR -76 192 47 1 1638 269 349 98 23 chr4 138081485 138081617 -17548503 - MIRb SINE MIR -79 189 48 1 1638 217 286 0 0 chr4 138082250 138082299 -17547821 - MIR SINE MIR -126 82 34 1 1638 364 254 0 26 chr4 138082395 138082512 -17547608 + GA-rich Low_complexity Low_complexity 3 116 0 1 1638 521 275 64 0 chr4 138083147 138083318 -17546802 - B3A SINE B2 -16 182 1 2 1638 187 250 0 0 chr4 138083325 138083369 -17546751 - MIRc SINE MIR -120 148 105 2 1638 225 322 21 32 chr4 138083764 138083857 -17546263 - LSU-rRNA_Hsa rRNA rRNA -1903 3132 3041 2 1638 382 297 25 0 chr4 138083942 138084060 -17546060 - L1MD2 LINE L1 -512 5847 5727 2 1638 242 293 0 0 chr4 138084186 138084244 -17545876 - BC1_Mm scRNA scRNA -63 89 32 2 1638 226 224 0 134 chr4 138084266 138084333 -17545787 + Lx8 LINE L1 7090 7147 -326 2 1638 267 31 0 0 chr4 138084363 138084395 -17545725 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 1638 468 0 0 0 chr4 138084440 138084492 -17545628 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1638 451 320 85 72 chr4 138084589 138085061 -17545059 - L1MDa LINE L1 -5356 1277 585 2 1638 466 143 22 0 chr4 138085212 138085303 -17544817 + GA-rich Low_complexity Low_complexity 5 97 0 2 1638 512 310 171 69 chr4 138085440 138085901 -17544219 - L1MDa LINE L1 -6099 534 27 2 1638 360 0 0 0 chr4 138086709 138086749 -17543371 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 1638 1288 53 0 14 chr4 138086929 138087284 -17542836 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 2 1638 448 248 78 7 chr4 138087560 138087702 -17542418 - RMER15 LTR ERVL 0 575 424 2 1638 982 259 91 4 chr4 138088298 138088562 -17541558 - B4A SINE B4 -5 287 1 2 1638 201 333 0 0 chr4 138088751 138088814 -17541306 - L2a LINE L2 0 3426 3364 2 1638 1860 201 90 36 chr4 138089149 138089650 -17540470 - RLTR11A LTR ERVK 0 528 1 2 1638 638 297 78 0 chr4 138089656 138089875 -17540245 + MER2 DNA MER2_type 110 345 0 2 1638 731 249 25 25 chr4 138089929 138090127 -17539993 - B3A SINE B2 0 198 1 2 1638 405 212 33 50 chr4 138090844 138090958 -17539162 - MIRb SINE MIR -81 187 72 2 1638 208 284 45 0 chr4 138091710 138091777 -17538343 + MER5A DNA MER1_type 78 147 -42 2 1638 358 346 111 6 chr4 138091986 138092166 -17537954 + MLT1K LTR MaLR 215 413 -182 2 1638 180 0 0 0 chr4 138092174 138092194 -17537926 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1638 955 257 10 14 chr4 138092197 138092406 -17537714 - ID_B1 SINE B4 -16 208 1 2 1638 317 221 261 31 chr4 138094703 138094910 -17535210 - L2c LINE L2 -201 3186 2932 2 1638 408 213 96 0 chr4 138094992 138095086 -17535034 - PB1D10 SINE Alu -12 105 3 2 1638 275 228 11 0 chr4 138095310 138095402 -17534718 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 1638 427 228 6 18 chr4 138095414 138095579 -17534541 + (TG)n Simple_repeat Simple_repeat 1 163 0 2 1638 518 256 50 22 chr4 138095753 138095933 -17534187 + HAL1-2a_MD LINE L1 2352 2536 -488 2 1638 364 301 14 14 chr4 138096813 138096951 -17533169 + (CACCAT)n Simple_repeat Simple_repeat 4 141 0 2 1638 2109 164 186 13 chr4 138097028 138097491 -17532629 + RMER15 LTR ERVL 27 569 -6 2 1638 505 68 12 87 chr4 138097538 138097671 -17532449 + CT-rich Low_complexity Low_complexity 31 154 0 2 1638 1253 55 0 20 chr4 138097671 138097971 -17532149 + (TTC)n Simple_repeat Simple_repeat 1 293 0 2 1638 505 68 12 87 chr4 138097971 138097994 -17532126 + polypyrimidine Low_complexity Low_complexity 10 30 0 2 1638 188 367 25 0 chr4 138098048 138098127 -17531993 - MIRb SINE MIR -28 240 160 2 1638 290 381 40 13 chr4 138099865 138100014 -17530106 - MIRc SINE MIR -66 202 50 2 1638 242 56 28 0 chr4 138100775 138100811 -17529309 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 2 1638 546 16 0 0 chr4 138100930 138100993 -17529127 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1638 585 0 0 0 chr4 138100993 138101057 -17529063 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 1638 199 366 12 4 chr4 138101501 138101619 -17528501 + MIRc SINE MIR 22 143 -125 2 1638 259 327 9 18 chr4 138101925 138102034 -17528086 + GA-rich Low_complexity Low_complexity 2 109 0 2 1638 657 0 0 0 chr4 138102113 138102186 -17527934 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 1638 241 188 48 57 chr4 138102777 138102901 -17527219 + RLTR40 LTR ERVK 565 687 -130 2 1638 240 167 32 32 chr4 138102908 138102970 -17527150 + (CAGA)n Simple_repeat Simple_repeat 4 65 0 2 1638 200 125 0 91 chr4 138103045 138103089 -17527031 - L2b LINE L2 -10 3365 3326 2 1638 353 222 99 11 chr4 138103147 138103238 -17526882 + B3 SINE B2 118 216 0 2 1638 206 256 38 30 chr4 138104727 138104860 -17525260 + CT-rich Low_complexity Low_complexity 4 137 0 2 1638 24 32 0 0 chr4 138104924 138104955 -17525165 + AT_rich Low_complexity Low_complexity 1 31 0 2 1638 484 336 7 0 chr4 138105171 138105317 -17524803 + MIR SINE MIR 24 170 -92 2 1638 567 0 0 0 chr4 138105419 138105482 -17524638 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 2 1638 1019 62 54 0 chr4 138105483 138105613 -17524507 - B1_Mus1 SINE Alu -10 138 2 2 1638 1200 55 0 7 chr4 138106028 138106176 -17523944 + B1_Mus2 SINE Alu 1 147 0 2 1638 261 0 0 0 chr4 138106176 138106205 -17523915 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1638 739 287 57 9 chr4 138106382 138106593 -17523527 - ID_B1 SINE B4 -2 222 2 2 1638 334 327 40 52 chr4 138107452 138107531 -17522589 + MIR SINE MIR 3 81 -181 2 1638 1413 224 123 6 chr4 138107531 138107864 -17522256 + ORR1D1 LTR MaLR 1 372 -2 2 1638 334 327 40 52 chr4 138107864 138107958 -17522162 + MIR SINE MIR 82 174 -88 2 1638 195 351 0 13 chr4 138108481 138108556 -17521564 - MIR SINE MIR -74 134 61 2 1638 188 283 122 17 chr4 138108907 138109022 -17521098 + L3 LINE CR1 4246 4372 -117 2 1638 341 318 189 28 chr4 138109654 138110184 -17519936 - L2 LINE L2 -344 3075 2461 2 1638 351 81 0 75 chr4 138110397 138110477 -17519643 + G-rich Low_complexity Low_complexity 6 79 0 2 1638 588 180 225 0 chr4 138110591 138110702 -17519418 - B1_Mur2 SINE Alu -12 137 2 2 1638 270 0 0 0 chr4 138111531 138111561 -17518559 + (CATCG)n Simple_repeat Simple_repeat 5 34 0 2 1638 1322 190 0 5 chr4 138111840 138112062 -17518058 - URR1B DNA MER1_type -4 221 1 2 1638 255 251 0 12 chr4 138112989 138113061 -17517059 - MIR3 SINE MIR -102 166 97 2 1638 2952 80 31 0 chr4 138113992 138114380 -17515740 - MTB LTR MaLR 0 400 1 2 1638 316 296 115 39 chr4 138114949 138115079 -17515041 + MIRb SINE MIR 26 165 -103 2 1638 1668 202 71 16 chr4 138115311 138115689 -17514431 - MTD LTR MaLR -20 399 1 2 1638 627 191 3 29 chr4 138115885 138116204 -17513916 + (CA)n Simple_repeat Simple_repeat 1 310 0 2 1638 297 222 0 0 chr4 138116216 138116315 -17513805 + (CA)n Simple_repeat Simple_repeat 1 99 0 2 1638 225 132 0 0 chr4 138116867 138116905 -17513215 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2 1638 447 234 139 1 chr4 138116955 138117074 -17513046 - Lx5 LINE L1 -118 6940 6785 2 1638 950 190 30 10 chr4 138117054 138117251 -17512869 + Lx5 LINE L1 6503 6703 -347 2 1638 513 0 0 0 chr4 138117595 138117652 -17512468 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1638 234 0 0 0 chr4 138117652 138117677 -17512443 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1638 219 61 39 39 chr4 138118215 138118266 -17511854 + (GGGTG)n Simple_repeat Simple_repeat 1 51 0 2 1638 1242 291 47 11 chr4 138119062 138119423 -17510697 - MTEa LTR MaLR 0 379 6 2 1638 251 328 75 15 chr4 138119757 138119890 -17510230 + LTR16C LTR ERVL 79 219 -270 2 1638 210 427 38 8 chr4 138122153 138122285 -17507835 - MIR SINE MIR -57 151 16 2 1638 630 26 0 0 chr4 138124598 138124674 -17505446 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 1638 362 336 57 10 chr4 138124760 138124922 -17505198 - MIR3 SINE MIR -39 169 3 2 1638 1041 244 102 2 chr4 138127274 138127586 -17502534 + MTEa LTR MaLR 1 374 -5 2 1638 238 318 26 14 chr4 138128230 138128360 -17501760 + MIR SINE MIR 59 195 -73 2 1638 201 83 27 27 chr4 138128395 138128432 -17501688 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 2 1638 222 299 180 18 chr4 138128619 138128786 -17501334 + MIRb SINE MIR 55 248 -20 2 1638 1047 246 24 69 chr4 138129033 138129411 -17500709 + ORR1E LTR MaLR 3 419 0 2 1638 229 309 29 0 chr4 138129659 138129727 -17500393 + MIRm SINE MIR 68 137 -139 2 1638 396 0 0 0 chr4 138129729 138129773 -17500347 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1638 3321 59 0 17 chr4 138129780 138130194 -17499926 + MTB_Mm LTR MaLR 1 407 0 2 1638 312 27 0 0 chr4 138130997 138131034 -17499086 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1638 367 346 48 30 chr4 138131465 138131632 -17498488 + MIRb SINE MIR 3 172 -90 2 1638 937 268 97 22 chr4 138131799 138131888 -17498232 + B4 SINE B4 4 105 -187 2 1638 1422 76 16 16 chr4 138131888 138132076 -17498044 - B2_Mm2 SINE B2 -6 189 2 2 1638 937 268 97 22 chr4 138132076 138132253 -17497867 + B4 SINE B4 106 290 -2 2 1638 324 333 25 0 chr4 138132316 138132436 -17497684 - MER103 DNA DNA -13 153 31 2 1638 343 125 28 0 chr4 138132638 138132710 -17497410 + GA-rich Low_complexity Low_complexity 6 79 0 2 1638 242 160 0 20 chr4 138132889 138132940 -17497180 + GA-rich Low_complexity Low_complexity 5 54 0 2 1638 268 138 148 0 chr4 138132941 138133021 -17497099 + ID2 SINE ID 5 101 -51 2 1638 1231 136 39 0 chr4 138133132 138133338 -17496782 + URR1A DNA MER1_type 3 216 -10 2 1638 257 217 24 24 chr4 138133345 138133430 -17496690 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1638 550 252 43 0 chr4 138133430 138133569 -17496551 - RSINE1 SINE B4 -19 146 2 2 1638 480 329 132 13 chr4 138133603 138133831 -17496289 + MIR SINE MIR 1 257 -11 2 1638 226 279 103 0 chr4 138133837 138133905 -17496215 - ID SINE ID -148 76 2 2 1638 456 268 41 21 chr4 138133915 138134060 -17496060 - B1F1 SINE Alu 0 149 2 2 1638 317 307 53 101 chr4 138134839 138135067 -17495053 - Charlie18a DNA MER1_type -106 236 20 2 1638 625 301 56 53 chr4 138135113 138135397 -17494723 + B4A SINE B4 8 292 0 2 1638 242 167 17 0 chr4 138135425 138135485 -17494635 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1638 545 0 15 0 chr4 138135494 138135559 -17494561 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1638 259 286 73 37 chr4 138135572 138135681 -17494439 - MIRb SINE MIR -135 133 21 3 1638 263 152 0 33 chr4 138137746 138137807 -17492313 + GA-rich Low_complexity Low_complexity 2 60 0 3 1638 303 291 125 15 chr4 138137854 138137990 -17492130 + HAL1-3A_ME LINE L1 2285 2435 -423 3 1638 770 127 5 5 chr4 138138069 138138282 -17491838 + (TC)n Simple_repeat Simple_repeat 1 213 0 3 1638 356 398 61 42 chr4 138138552 138138814 -17491306 - L1M5 LINE L1 -1101 5045 4779 3 1638 267 31 0 0 chr4 138138882 138138914 -17491206 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1638 297 320 12 107 chr4 138139809 138139882 -17490238 + L1ME3 LINE L1 5670 5736 -2146 3 1638 550 224 44 15 chr4 138139882 138140018 -17490102 + B1_Mur1 SINE Alu 5 144 -5 3 1638 341 275 30 8 chr4 138140018 138140122 -17489998 + L1ME3 LINE L1 5737 5836 -326 3 1638 719 245 25 12 chr4 138140257 138140418 -17489702 + RSINE1 SINE B4 3 165 0 3 1638 189 0 0 0 chr4 138141108 138141129 -17488991 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1638 669 25 0 0 chr4 138141129 138141207 -17488913 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1638 244 237 0 48 chr4 138141422 138141484 -17488636 - MIRb SINE MIR -103 165 107 3 1638 183 275 112 39 chr4 138141978 138142071 -17488049 + MIR3 SINE MIR 63 156 -52 3 1638 2776 62 25 3 chr4 138142774 138143129 -17486991 - L1_Mus2 LINE L1 -6 6560 6198 3 1638 681 13 0 0 chr4 138143257 138143335 -17486785 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1638 230 229 0 67 chr4 138143381 138143454 -17486666 - B4A SINE B4 -198 94 28 3 1638 491 227 10 0 chr4 138143544 138143641 -17486479 - U6 snRNA snRNA -6 101 4 3 1638 406 190 279 6 chr4 138143636 138143805 -17486315 - B4 SINE B4 -76 216 2 3 1638 202 333 122 15 chr4 138144263 138144394 -17485726 + MIRb SINE MIR 123 267 -1 3 1638 517 234 148 0 chr4 138144805 138144933 -17485187 + B1F SINE Alu 1 147 -2 3 1638 216 167 0 0 chr4 138144952 138144988 -17485132 + G-rich Low_complexity Low_complexity 2 37 0 3 1638 410 0 0 20 chr4 138145122 138145173 -17484947 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1638 362 374 40 0 chr4 138145321 138145519 -17484601 - L1M5 LINE L1 -412 5712 5507 3 1638 928 259 38 35 chr4 138145621 138145909 -17484211 - B4 SINE B4 -2 290 2 3 1638 369 307 72 4 chr4 138146401 138146545 -17483575 - B4 SINE B4 -10 155 1 3 1638 486 0 0 0 chr4 138147505 138147559 -17482561 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1638 713 231 68 29 chr4 138148632 138148837 -17481283 + ID_B1 SINE B4 6 218 -6 3 1638 1560 48 21 0 chr4 138148999 138149187 -17480933 + B2_Mm2 SINE B2 1 192 -3 3 1638 491 246 26 9 chr4 138149468 138149583 -17480537 - PB1D10 SINE Alu 0 117 1 3 1638 236 218 0 35 chr4 138149651 138149708 -17480412 + CT-rich Low_complexity Low_complexity 2 56 0 3 1639 347 320 31 43 chr4 138150745 138150908 -17479212 - MIR SINE MIR -98 164 4 3 1639 567 329 49 16 chr4 138150963 138151207 -17478913 + B4A SINE B4 25 276 -16 3 1639 1074 103 0 0 chr4 138151246 138151504 -17478616 + (CA)n Simple_repeat Simple_repeat 1 258 0 3 1639 1269 56 0 0 chr4 138151510 138151672 -17478448 + (GA)n Simple_repeat Simple_repeat 2 163 0 3 1639 339 322 35 0 chr4 138151672 138151787 -17478333 + B1F SINE Alu 30 148 -1 3 1639 453 152 0 12 chr4 138152204 138152284 -17477836 + RSINE1 SINE B4 54 132 -33 3 1639 29 28 0 0 chr4 138152300 138152336 -17477784 + AT_rich Low_complexity Low_complexity 1 36 0 3 1639 241 353 7 119 chr4 138153224 138153375 -17476745 + MER117 DNA MER1_type 33 166 -31 3 1639 196 414 20 0 chr4 138153446 138153545 -17476575 - MIR SINE MIR -60 148 48 3 1639 192 357 0 0 chr4 138153685 138153755 -17476365 + MIR SINE MIR 78 147 -61 3 1639 207 198 128 42 chr4 138154272 138154362 -17475758 - L2c LINE L2 -61 3326 3238 3 1639 23 0 0 0 chr4 138154465 138154488 -17475632 + AT_rich Low_complexity Low_complexity 1 23 0 3 1639 444 51 0 0 chr4 138154493 138154552 -17475568 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1639 315 0 0 0 chr4 138154690 138154725 -17475395 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1639 413 194 7 28 chr4 138154846 138154989 -17475131 + (TATG)n Simple_repeat Simple_repeat 1 140 0 3 1639 822 151 12 6 chr4 138155004 138155177 -17474943 + (TATG)n Simple_repeat Simple_repeat 3 176 0 3 1639 792 279 98 26 chr4 138155185 138155450 -17474670 - B4 SINE B4 -4 288 5 3 1639 200 373 52 7 chr4 138155566 138155701 -17474419 + MIRb SINE MIR 89 229 -39 3 1639 258 240 20 209 chr4 138156267 138156420 -17473700 + RMER15 LTR ERVL 1 124 -451 3 1639 403 302 72 30 chr4 138156421 138156588 -17473532 + RMER15 LTR ERVL 240 413 -162 3 1639 321 333 91 14 chr4 138156825 138156968 -17473152 + MIR SINE MIR 48 201 -61 3 1639 500 160 50 10 chr4 138157483 138157584 -17472536 - B4A SINE B4 -6 286 182 3 1639 184 122 24 24 chr4 138157606 138157648 -17472472 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 1639 451 277 65 14 chr4 138157872 138158011 -17472109 - RSINE1 SINE B4 -8 157 12 3 1639 212 328 13 12 chr4 138160548 138160640 -17469480 + MIR SINE MIR 65 158 -118 3 1639 269 274 122 53 chr4 138161903 138162034 -17468086 + MER5B DNA MER1_type 6 145 -33 3 1639 259 186 0 48 chr4 138162506 138162568 -17467552 + GA-rich Low_complexity Low_complexity 1 59 0 3 1639 273 324 63 7 chr4 138162814 138162957 -17467163 - MIRc SINE MIR -117 151 1 3 1639 676 197 17 17 chr4 138163580 138163875 -17466245 + GA-rich Low_complexity Low_complexity 1 295 0 3 1639 649 235 0 63 chr4 138164208 138164367 -17465753 - B1_Mur2 SINE Alu 0 149 1 3 1639 233 384 36 36 chr4 138164367 138164400 -17465720 - B4 SINE B4 -207 85 53 3 1639 223 336 35 16 chr4 138164904 138165071 -17465049 - MIR SINE MIR -22 246 70 3 1639 290 238 0 0 chr4 138165518 138165581 -17464539 + MIR SINE MIR 70 132 -76 3 1639 270 0 0 0 chr4 138165687 138165717 -17464403 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1639 618 60 0 0 chr4 138165717 138165799 -17464321 + (GA)n Simple_repeat Simple_repeat 1 83 0 3 1639 314 42 0 41 chr4 138165896 138165945 -17464175 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 3 1639 590 214 0 38 chr4 138165950 138166081 -17464039 - B1_Mus2 SINE Alu -21 126 1 3 1639 622 274 87 31 chr4 138166081 138166296 -17463824 - B4A SINE B4 -61 231 2 3 1639 194 329 36 12 chr4 138167127 138167210 -17462910 + MIRb SINE MIR 57 141 -127 3 1639 339 269 0 0 chr4 138167301 138167379 -17462741 - ID4 SINE ID -4 79 2 3 1639 541 239 21 28 chr4 138167388 138167530 -17462590 - ID_B1 SINE B4 -2 222 82 3 1639 189 0 0 0 chr4 138167531 138167552 -17462568 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1639 225 83 28 0 chr4 138167783 138167819 -17462301 + MIRc SINE MIR 112 148 -120 3 1639 510 239 49 28 chr4 138168122 138168264 -17461856 + B1F1 SINE Alu 5 149 0 3 1639 282 106 0 0 chr4 138168293 138168340 -17461780 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 3 1639 1245 71 0 6 chr4 138169674 138169845 -17460275 - B2_Mm2 SINE B2 -25 170 1 3 1639 207 338 0 0 chr4 138170656 138170727 -17459393 + C-rich Low_complexity Low_complexity 2 72 0 3 1639 423 258 113 37 chr4 138170944 138171268 -17458852 + L1M2 LINE L1 5123 5475 -816 3 1639 258 32 0 0 chr4 138171273 138171304 -17458816 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1639 204 319 103 34 chr4 138171576 138171693 -17458427 - L2b LINE L2 -25 3350 3226 3 1639 389 341 0 60 chr4 138172044 138172228 -17457892 + MTE2b LTR MaLR 29 201 -178 3 1639 324 267 0 72 chr4 138172228 138172325 -17457795 + B1_Mur1 SINE Alu 58 147 -2 3 1639 243 146 0 0 chr4 138172339 138172380 -17457740 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1639 194 330 28 46 chr4 138172802 138172910 -17457210 + L2a LINE L2 2742 2847 -572 3 1639 329 372 60 19 chr4 138172993 138173259 -17456861 + L2a LINE L2 3031 3307 -119 3 1639 654 245 40 7 chr4 138174423 138174575 -17455545 - RSINE1 SINE B4 -7 158 2 3 1639 367 344 31 0 chr4 138174578 138174706 -17455414 - MIR SINE MIR -114 148 17 3 1639 1117 168 81 5 chr4 138174827 138175037 -17455083 - URR1A DNA MER1_type 0 226 1 3 1639 293 233 20 20 chr4 138175429 138175582 -17454538 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1639 473 262 29 12 chr4 138175609 138175779 -17454341 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1639 702 313 38 65 chr4 138175784 138176019 -17454101 - B4 SINE B4 0 292 65 3 1639 361 167 15 0 chr4 138176019 138176085 -17454035 - ORR1A4 LTR MaLR -2 392 326 3 1639 9009 145 41 105 chr4 138176078 138177075 -17453045 - ORR1A4-int LTR MaLR -31 1932 1038 3 1639 1215 20 7 0 chr4 138177075 138177221 -17452899 - B1_Mm SINE Alu 0 147 1 3 1639 9009 145 41 105 chr4 138177221 138178288 -17451832 - ORR1A4-int LTR MaLR -926 1037 1 3 1639 1739 122 37 111 chr4 138178286 138178638 -17451482 - ORR1A4 LTR MaLR -2 327 2 3 1639 371 253 0 0 chr4 138178639 138178718 -17451402 - B4 SINE B4 -213 79 1 3 1639 227 244 0 0 chr4 138179263 138179308 -17450812 + ID2 SINE ID 3 47 -36 3 1639 968 71 0 28 chr4 138180098 138180243 -17449877 - B1_Mus1 SINE Alu 0 148 8 3 1639 203 365 14 0 chr4 138180403 138180477 -17449643 - L2b LINE L2 -31 3344 3270 3 1639 1223 299 71 81 chr4 138180506 138181435 -17448685 + L1MA5 LINE L1 4980 5926 -1547 3 1639 273 75 0 0 chr4 138181435 138181475 -17448645 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1639 393 339 78 54 chr4 138181475 138181610 -17448510 + L1MA5 LINE L1 5927 6077 -1396 3 1639 307 340 10 0 chr4 138181778 138181875 -17448245 + PB1D10 SINE Alu 2 99 -18 3 1639 588 77 0 9 chr4 138182681 138182786 -17447334 + L1_Mus3 LINE L1 6534 6637 -1 3 1639 225 352 9 69 chr4 138183449 138183565 -17446555 + L2b LINE L2 3229 3337 -38 3 1639 345 325 38 30 chr4 138183603 138183797 -17446323 - MIR SINE MIR -34 228 39 4 1639 405 216 182 15 chr4 138184070 138184240 -17445880 - MIRb SINE MIR -64 204 3 4 1639 220 27 54 0 chr4 138185276 138185313 -17444807 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 1639 423 198 0 73 chr4 138185313 138185422 -17444698 - PB1D10 SINE Alu -12 105 5 4 1639 1003 154 17 0 chr4 138186212 138186387 -17443733 + URR1A DNA MER1_type 49 226 0 4 1639 289 248 200 0 chr4 138186672 138186777 -17443343 + L2a LINE L2 3300 3425 -1 4 1639 393 22 0 0 chr4 138186823 138186869 -17443251 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1639 1964 164 72 10 chr4 138187156 138187543 -17442577 + MTD LTR MaLR 1 411 -8 4 1639 454 267 0 0 chr4 138187567 138187668 -17442452 - B4 SINE B4 -153 139 39 4 1639 564 15 0 0 chr4 138190671 138190736 -17439384 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1639 228 176 0 19 chr4 138191225 138191277 -17438843 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 4 1639 678 81 27 0 chr4 138191319 138191430 -17438690 + (GA)n Simple_repeat Simple_repeat 2 115 0 4 1639 197 240 103 39 chr4 138192808 138192886 -17437234 - MIRb SINE MIR -146 122 40 4 1639 1266 167 161 50 chr4 138194207 138194544 -17435576 + ORR1D1 LTR MaLR 1 362 -5 4 1639 448 111 120 22 chr4 138194510 138194602 -17435518 + MTC LTR MaLR 6 106 -315 4 1639 412 318 115 0 chr4 138194617 138194834 -17435286 + MIR SINE MIR 16 257 -5 4 1639 749 95 15 0 chr4 138195262 138195399 -17434721 + (TCTG)n Simple_repeat Simple_repeat 4 142 0 4 1639 358 197 40 0 chr4 138195400 138195476 -17434644 - HAL1-3A_ME LINE L1 -809 2049 1971 4 1639 283 292 56 19 chr4 138195639 138195747 -17434373 + MLT1H LTR MaLR 13 124 -425 4 1639 275 280 86 0 chr4 138197973 138198066 -17432054 - MIRc SINE MIR -107 161 61 4 1639 211 296 42 0 chr4 138199657 138199728 -17430392 + L2a LINE L2 3310 3383 -43 4 1639 391 260 20 10 chr4 138199976 138200077 -17430043 + PB1D10 SINE Alu 1 102 -15 4 1639 2234 91 25 0 chr4 138200170 138200489 -17429631 - ORR1A2 LTR MaLR 0 327 1 4 1639 477 0 0 0 chr4 138201124 138201177 -17428943 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1639 707 301 57 11 chr4 138201204 138201466 -17428654 - B4A SINE B4 -4 288 15 4 1639 303 28 0 0 chr4 138201472 138201508 -17428612 + (TAA)n Simple_repeat Simple_repeat 3 38 0 4 1639 711 35 0 0 chr4 138201838 138201924 -17428196 + (TCC)n Simple_repeat Simple_repeat 2 87 0 4 1639 516 272 13 70 chr4 138202081 138202239 -17427881 + B3A SINE B2 48 196 -2 4 1639 231 214 64 13 chr4 138202241 138202397 -17427723 + (TA)n Simple_repeat Simple_repeat 2 165 0 4 1639 201 338 58 65 chr4 138204619 138204774 -17425346 - L2b LINE L2 -189 3186 3033 4 1639 270 0 0 0 chr4 138205200 138205230 -17424890 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1639 1214 238 157 3 chr4 138205508 138205832 -17424288 + MTE2b LTR MaLR 1 374 -5 4 1639 876 273 87 30 chr4 138205900 138206198 -17423922 - MT2A LTR ERVL -145 388 74 4 1639 249 328 0 0 chr4 138206985 138207049 -17423071 + (CCCA)n Simple_repeat Simple_repeat 2 65 0 4 1639 797 201 0 4 chr4 138207068 138207318 -17422802 + (TCCA)n Simple_repeat Simple_repeat 1 248 0 4 1639 1125 109 0 0 chr4 138207439 138207761 -17422359 + (CCAA)n Simple_repeat Simple_repeat 1 322 0 4 1639 184 232 214 14 chr4 138208268 138208338 -17421782 - MIR SINE MIR -63 145 62 4 1639 354 45 0 0 chr4 138209379 138209423 -17420697 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 4 1639 184 194 0 0 chr4 138209458 138209489 -17420631 - MIRm SINE MIR -25 251 221 4 1639 649 222 59 0 chr4 138209616 138209769 -17420351 - MLT1B LTR MaLR -6 384 223 4 1639 501 276 82 62 chr4 138211294 138211652 -17418468 - L1_Rod LINE L1 -673 5627 5205 4 1639 417 291 143 16 chr4 138211861 138212112 -17418008 + B4A SINE B4 5 287 -5 4 1639 270 0 0 0 chr4 138212121 138212151 -17417969 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1639 432 130 0 0 chr4 138212313 138212382 -17417738 + (TCC)n Simple_repeat Simple_repeat 2 70 0 4 1639 378 0 0 0 chr4 138212382 138212424 -17417696 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1639 1114 58 13 13 chr4 138212424 138212580 -17417540 - B2_Mm2 SINE B2 -33 162 7 4 1639 213 227 236 11 chr4 138212626 138212715 -17417405 + MIRc SINE MIR 87 195 -73 4 1639 1284 198 63 21 chr4 138213235 138213570 -17416550 - RLTR15 LTR ERVK -10 349 1 4 1639 296 348 63 7 chr4 138213628 138213770 -17416350 + MIRc SINE MIR 7 156 -112 4 1639 705 214 34 28 chr4 138214371 138214549 -17415571 - Lx7 LINE L1 0 7696 7518 4 1639 208 151 13 64 chr4 138214559 138214637 -17415483 + (TAA)n Simple_repeat Simple_repeat 1 74 0 4 1639 619 217 12 82 chr4 138214640 138214896 -17415224 - Lx7 LINE L1 -142 7554 7317 4 1639 577 215 73 13 chr4 138215029 138215180 -17414940 + MLT1C LTR MaLR 35 194 -273 4 1639 311 284 48 10 chr4 138215379 138215482 -17414638 + PB1D10 SINE Alu 2 108 -9 4 1639 215 350 10 10 chr4 138215768 138215869 -17414251 - MIR SINE MIR -127 135 35 4 1639 304 326 33 0 chr4 138215991 138216083 -17414037 + MLT1L LTR MaLR 512 606 -4 4 1639 426 289 49 16 chr4 138216182 138216365 -17413755 - LTR79 LTR ERVL -51 476 288 4 1639 226 164 0 35 chr4 138216612 138216669 -17413451 + GA-rich Low_complexity Low_complexity 5 59 0 4 1639 1257 71 0 0 chr4 138216921 138217318 -17412802 + (TG)n Simple_repeat Simple_repeat 1 397 0 4 1639 351 241 118 18 chr4 138217844 138217954 -17412166 - B4 SINE B4 -171 121 1 4 1639 1242 96 8 0 chr4 138218390 138218787 -17411333 + (GAAA)n Simple_repeat Simple_repeat 1 399 0 4 1639 348 266 53 11 chr4 138218888 138218983 -17411137 + MIRc SINE MIR 50 148 -120 4 1639 319 268 184 32 chr4 138219198 138219356 -17410764 - B4A SINE B4 -4 288 107 4 1639 261 0 0 0 chr4 138219386 138219415 -17410705 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1639 454 219 113 9 chr4 138219427 138219542 -17410578 - B3 SINE B2 -70 146 20 4 1639 192 301 13 52 chr4 138219888 138219965 -17410155 - MIR SINE MIR -136 126 53 4 1639 205 295 64 37 chr4 138219989 138220098 -17410022 - MER5B DNA MER1_type -18 160 49 4 1639 709 269 50 116 chr4 138220762 138220974 -17409146 + B4A SINE B4 8 220 -72 4 1639 901 205 31 16 chr4 138220974 138221167 -17408953 + B3A SINE B2 2 197 -1 4 1639 709 269 50 116 chr4 138221167 138221257 -17408863 + B4A SINE B4 221 290 -2 4 1639 341 258 0 8 chr4 138221263 138221384 -17408736 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 1639 218 333 62 10 chr4 138221989 138222086 -17408034 - L2b LINE L2 -33 3342 3241 4 1639 201 360 45 0 chr4 138222809 138222898 -17407222 - MIRb SINE MIR -100 168 76 4 1639 199 330 146 0 chr4 138223359 138223462 -17406658 + MIRb SINE MIR 21 138 -130 4 1639 240 35 0 0 chr4 138223464 138223493 -17406627 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1639 229 290 0 0 chr4 138223504 138223566 -17406554 - ID4 SINE ID -19 64 3 4 1639 537 274 73 11 chr4 138223598 138223775 -17406345 + B4A SINE B4 4 191 -101 4 1639 464 240 83 0 chr4 138223985 138224106 -17406014 - B1F SINE Alu -18 131 1 4 1639 278 261 93 50 chr4 138224137 138224270 -17405850 + MIR SINE MIR 10 146 -62 4 1639 402 239 0 0 chr4 138224323 138224478 -17405642 + (TG)n Simple_repeat Simple_repeat 1 155 0 4 1639 313 241 179 45 chr4 138224511 138224670 -17405450 + MTEa LTR MaLR 163 338 -41 4 1639 793 261 4 35 chr4 138224665 138224891 -17405229 - ID_B1 SINE B4 0 224 6 4 1639 830 292 54 82 chr4 138226687 138227075 -17403045 - MLT1B LTR MaLR -2 388 12 4 1639 224 217 106 24 chr4 138227123 138227208 -17402912 - L2a LINE L2 -62 3364 3273 4 1639 704 294 41 65 chr4 138227323 138227614 -17402506 + B4A SINE B4 1 284 -8 4 1639 222 244 12 25 chr4 138227996 138228076 -17402044 + C-rich Low_complexity Low_complexity 4 82 0 4 1639 769 170 146 55 chr4 138228696 138228895 -17401225 - B4 SINE B4 -71 221 5 4 1639 339 365 52 45 chr4 138228881 138229211 -17400909 - MLT1D LTR MaLR -170 335 4 4 1639 183 150 24 24 chr4 138229396 138229437 -17400683 - MIR SINE MIR -19 243 203 4 1639 320 243 0 2 chr4 138229824 138229905 -17400215 + MTEa LTR MaLR 15 94 -285 4 1639 265 280 140 29 chr4 138230085 138230221 -17399899 + Ricksha DNA MuDR 758 908 -2338 4 1639 240 316 50 12 chr4 138230748 138230893 -17399227 - L2a LINE L2 0 3426 3225 4 1639 1107 247 22 15 chr4 138231359 138231630 -17398490 + B4A SINE B4 1 273 -19 4 1639 1411 243 58 26 chr4 138232042 138232441 -17397679 - MTEa LTR MaLR -16 403 7 4 1639 441 36 0 0 chr4 138233320 138233375 -17396745 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1639 378 0 0 0 chr4 138233375 138233416 -17396704 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1639 861 111 8 0 chr4 138235767 138235893 -17394227 - B1_Mur4 SINE Alu -22 128 2 4 1639 265 277 146 30 chr4 138236005 138236169 -17393951 + L2 LINE L2 2210 2392 -1027 4 1639 282 87 0 0 chr4 138237130 138237176 -17392944 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 4 1639 558 0 0 0 chr4 138237443 138237505 -17392615 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1639 620 247 0 64 chr4 138237510 138237666 -17392454 - B4 SINE B4 0 292 147 4 1639 1869 210 14 8 chr4 138237668 138238038 -17392082 + MTD LTR MaLR 3 374 -45 5 1639 328 207 229 17 chr4 138238060 138238178 -17391942 - B4 SINE B4 -143 149 7 4 1639 522 0 0 0 chr4 138238183 138238241 -17391879 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 5 1639 534 31 0 0 chr4 138238241 138238304 -17391816 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1639 1995 176 38 16 chr4 138239088 138239494 -17390626 + MTD LTR MaLR 4 405 -14 5 1639 465 19 0 0 chr4 138239593 138239647 -17390473 + (TCCCC)n Simple_repeat Simple_repeat 2 55 0 5 1639 618 68 0 0 chr4 138239722 138239810 -17390310 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1639 387 113 0 0 chr4 138240007 138240069 -17390051 + (CCA)n Simple_repeat Simple_repeat 3 64 0 5 1639 188 322 17 0 chr4 138240232 138240291 -17389829 + MIRc SINE MIR 33 92 -176 5 1639 840 258 67 0 chr4 138242771 138242980 -17387140 - ID_B1 SINE B4 0 224 2 5 1639 846 259 19 41 chr4 138243030 138243300 -17386820 + L1MA6 LINE L1 6027 6290 -10 5 1639 369 257 10 15 chr4 138243393 138243591 -17386529 + GA-rich Low_complexity Low_complexity 1 197 0 5 1639 248 204 0 0 chr4 138243548 138243592 -17386528 + G-rich Low_complexity Low_complexity 3 46 0 5 1639 373 194 16 69 chr4 138243604 138243792 -17386328 + G-rich Low_complexity Low_complexity 3 180 0 5 1639 2133 81 65 0 chr4 138243955 138244262 -17385858 - ORR1A2 LTR MaLR 0 327 1 5 1639 428 265 10 0 chr4 138244388 138244486 -17385634 - RSINE1 SINE B4 -36 129 31 5 1639 463 90 22 22 chr4 138244672 138244763 -17385357 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 5 1639 297 0 0 0 chr4 138245560 138245593 -17384527 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1639 243 0 0 0 chr4 138245593 138245619 -17384501 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1639 258 32 0 0 chr4 138246742 138246773 -17383347 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 5 1639 239 274 16 0 chr4 138248376 138248438 -17381682 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 5 1639 243 0 0 0 chr4 138248438 138248465 -17381655 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1639 246 351 0 11 chr4 138248762 138248857 -17381263 + MIRb SINE MIR 107 200 -68 5 1639 323 269 177 58 chr4 138249937 138250197 -17379923 + B4 SINE B4 2 292 0 5 1639 303 161 0 0 chr4 138250203 138250259 -17379861 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1639 229 236 100 11 chr4 138250423 138250513 -17379607 + L1ME4a LINE L1 6008 6105 -19 5 1639 505 296 77 6 chr4 138251794 138251964 -17378156 + B3A SINE B2 1 182 -16 5 1639 180 111 0 0 chr4 138251989 138252016 -17378104 + (ATG)n Simple_repeat Simple_repeat 1 27 0 5 1639 291 277 24 24 chr4 138252156 138252241 -17377879 - MLT1I LTR MaLR -227 184 100 5 1639 237 33 0 0 chr4 138253008 138253038 -17377082 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1639 501 17 0 0 chr4 138253471 138253529 -17376591 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1639 751 231 6 6 chr4 138253534 138253691 -17376429 - B3A SINE B2 -41 157 1 5 1639 894 119 36 13 chr4 138253741 138254125 -17375995 + CT-rich Low_complexity Low_complexity 1 392 0 5 1639 383 187 27 0 chr4 138254125 138254200 -17375920 - ID4_ SINE ID -6 77 1 5 1639 1314 242 40 70 chr4 138254802 138255175 -17374945 - MTE2a LTR MaLR -7 372 11 5 1639 360 256 40 30 chr4 138255712 138255868 -17374252 + B4 SINE B4 1 165 0 5 1639 3986 59 60 8 chr4 138257422 138257954 -17372166 + LTRIS2 LTR ERV1 5 564 0 5 1639 213 121 0 0 chr4 138257979 138258012 -17372108 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 5 1639 522 0 0 0 chr4 138258344 138258402 -17371718 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1639 486 0 0 0 chr4 138258402 138258455 -17371665 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1639 186 71 0 0 chr4 138259540 138259568 -17370552 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 5 1639 207 0 0 0 chr4 138260166 138260189 -17369931 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1639 539 228 168 35 chr4 138260203 138260376 -17369744 - B3A SINE B2 0 198 3 5 1639 203 156 44 0 chr4 138261837 138261882 -17368238 + A-rich Low_complexity Low_complexity 3 49 0 5 1639 322 302 69 90 chr4 138262802 138263035 -17367085 + RMER15 LTR ERVL 338 565 -10 5 1639 765 182 0 14 chr4 138263529 138263668 -17366452 - B1_Mur2 SINE Alu -1 148 12 5 1639 295 305 47 94 chr4 138263537 138263707 -17366413 - B4 SINE B4 -73 219 58 5 1639 372 258 123 96 chr4 138265284 138265430 -17364690 + B4A SINE B4 2 151 -141 5 1639 528 125 29 9 chr4 138265557 138265662 -17364458 + GA-rich Low_complexity Low_complexity 4 110 0 5 1639 486 0 0 0 chr4 138266466 138266520 -17363600 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1639 235 324 27 36 chr4 138267114 138267226 -17362894 - L2b LINE L2 -13 3362 3252 5 1639 229 289 155 39 chr4 138267365 138267520 -17362600 - MIRc SINE MIR 0 268 96 5 1639 22 35 0 0 chr4 138267638 138267667 -17362453 + AT_rich Low_complexity Low_complexity 1 29 0 5 1639 761 264 14 10 chr4 138267672 138267879 -17362241 - B3 SINE B2 -8 208 1 5 1639 739 272 112 80 chr4 138267980 138268344 -17361776 - ORR1E LTR MaLR -8 362 1 5 1639 348 289 77 0 chr4 138268956 138269060 -17361060 + PB1 SINE Alu 3 114 -13 5 1639 791 141 35 21 chr4 138269246 138269391 -17360729 - B1_Mur2 SINE Alu -1 148 2 5 1639 648 221 21 167 chr4 138269401 138269600 -17360520 - B3 SINE B2 -5 211 37 5 1639 891 208 71 5 chr4 138269600 138269798 -17360322 - B3 SINE B2 -5 211 1 5 1639 648 221 21 167 chr4 138269798 138269837 -17360283 - B3 SINE B2 -180 36 8 5 1639 726 117 0 0 chr4 138269837 138269948 -17360172 + (TCCC)n Simple_repeat Simple_repeat 2 112 0 5 1639 188 149 0 21 chr4 138270038 138270086 -17360034 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 5 1639 504 0 0 0 chr4 138270414 138270470 -17359650 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1639 866 211 19 33 chr4 138270993 138271204 -17358916 + ID_B1 SINE B4 2 209 -15 5 1639 466 30 14 29 chr4 138271209 138271278 -17358842 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 5 1639 182 230 88 20 chr4 138271956 138272058 -17358062 + L2 LINE L2 2695 2803 -616 5 1639 2045 158 38 36 chr4 138273194 138273587 -17356533 - ORR1B1 LTR MaLR 0 394 1 5 1639 204 40 0 0 chr4 138273794 138273819 -17356301 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1639 1159 48 0 0 chr4 138273834 138273981 -17356139 - B1_Mus1 SINE Alu 0 148 2 5 1639 307 0 47 0 chr4 138274019 138274062 -17356058 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1639 500 0 17 0 chr4 138274127 138274187 -17355933 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1639 446 0 19 0 chr4 138274252 138274306 -17355814 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1639 227 281 89 11 chr4 138277826 138277916 -17352204 - LTR16B1 LTR ERVL -261 219 123 5 1639 577 289 96 32 chr4 138278806 138279056 -17351064 - B4A SINE B4 -20 272 7 5 1639 278 100 0 39 chr4 138279056 138279108 -17351012 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 5 1640 213 382 6 31 chr4 138281885 138282047 -17348073 + L2 LINE L2 1383 1540 -1879 5 1640 504 117 0 0 chr4 138282175 138282252 -17347868 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 1640 895 178 14 0 chr4 138282414 138282560 -17347560 + B1_Mus1 SINE Alu 1 148 0 5 1640 338 266 111 25 chr4 138284146 138284308 -17345812 + MIRb SINE MIR 59 234 -34 5 1640 231 70 33 50 chr4 138284583 138284643 -17345477 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 1640 273 185 0 0 chr4 138286105 138286170 -17343950 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 5 1640 572 290 199 0 chr4 138286175 138286361 -17343759 - ID_B1 SINE B4 0 224 2 5 1640 1812 234 35 26 chr4 138286842 138287350 -17342770 + RLTR11A2 LTR ERVK 1 513 -14 5 1640 341 281 104 9 chr4 138288165 138288280 -17341840 + ID_B1 SINE B4 32 157 -67 5 1640 678 266 91 16 chr4 138288406 138288593 -17341527 + ID_B1 SINE B4 7 207 -17 5 1640 429 70 0 0 chr4 138288830 138288887 -17341233 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1640 1848 141 153 0 chr4 138288917 138289250 -17340870 - ORR1C2 LTR MaLR 0 384 1 5 1640 570 271 21 0 chr4 138290555 138290699 -17339421 - B1F SINE Alu -2 147 1 5 1640 989 155 125 39 chr4 138291166 138291374 -17338746 - URR1A DNA MER1_type 0 226 1 5 1640 195 42 0 0 chr4 138292404 138292428 -17337692 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1640 538 132 66 0 chr4 138292428 138292519 -17337601 - B1_Mus2 SINE Alu -9 138 42 5 1640 245 213 49 0 chr4 138292591 138292652 -17337468 - ID_B1 SINE B4 -77 147 84 5 1640 288 164 36 0 chr4 138292598 138292653 -17337467 - B1F2 SINE Alu -91 58 2 5 1640 384 77 0 0 chr4 138292669 138292721 -17337399 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1640 304 303 193 21 chr4 138292744 138292977 -17337143 - B4A SINE B4 -19 273 1 5 1640 217 305 41 21 chr4 138293025 138293122 -17336998 - L2a LINE L2 -5 3421 3323 5 1640 414 0 0 0 chr4 138293465 138293511 -17336609 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1640 1110 238 9 9 chr4 138294865 138295077 -17335043 - B3 SINE B2 -3 213 2 5 1640 197 333 19 39 chr4 138295694 138295797 -17334323 + L2a LINE L2 3226 3326 -100 5 1640 275 313 72 0 chr4 138296095 138296178 -17333942 - MTE-int LTR MaLR -45 1535 1447 5 1640 599 308 40 39 chr4 138296256 138296539 -17333581 - ORR1E LTR MaLR -83 301 1 5 1640 280 365 32 4 chr4 138296712 138296887 -17333233 - MIR SINE MIR -80 188 9 5 1640 800 229 106 34 chr4 138297022 138297230 -17332890 + ID_B1 SINE B4 2 224 0 5 1640 853 204 84 21 chr4 138297238 138297428 -17332692 + B3 SINE B2 3 204 -12 6 1640 485 250 13 73 chr4 138299856 138300007 -17330113 + ID_B1 SINE B4 77 218 -6 6 1640 231 362 78 24 chr4 138300773 138300940 -17329180 + MLT1H LTR MaLR 357 532 -17 6 1640 689 256 42 42 chr4 138303032 138303244 -17326876 + MTEa LTR MaLR 4 215 -164 6 1640 225 100 39 20 chr4 138303244 138303295 -17326825 + CT-rich Low_complexity Low_complexity 3 54 0 6 1640 440 257 60 76 chr4 138303297 138303482 -17326638 + MTEa LTR MaLR 198 379 0 6 1640 226 342 121 20 chr4 138303560 138303709 -17326411 + MIR SINE MIR 82 245 -17 6 1640 225 174 16 50 chr4 138304006 138304127 -17325993 + (CAGCC)n Simple_repeat Simple_repeat 2 118 0 6 1640 313 271 31 10 chr4 138304485 138304582 -17325538 - MIR SINE MIR -72 136 38 6 1640 499 193 23 27 chr4 138304813 138304969 -17325151 + Lx4B LINE L1 6785 6951 -107 6 1640 1268 243 93 8 chr4 138305340 138305726 -17324394 + MTD LTR MaLR 1 419 0 6 1640 895 264 14 14 chr4 138308583 138308798 -17321322 + B3 SINE B2 1 215 -1 6 1640 265 318 55 16 chr4 138308979 138309107 -17321013 + MER53 DNA hAT 46 178 -15 6 1640 182 259 103 0 chr4 138309416 138309474 -17320646 - MIRm SINE MIR -156 120 57 6 1640 357 319 35 40 chr4 138310377 138310550 -17319570 - MIR SINE MIR -35 227 56 6 1640 280 308 50 65 chr4 138310644 138310658 -17319462 + ID_B1 SINE B4 69 205 -19 6 1640 303 261 88 48 chr4 138310658 138310783 -17319337 + B1F1 SINE Alu 1 130 -19 6 1640 329 228 88 16 chr4 138311204 138311329 -17318791 - MIRb SINE MIR -85 183 50 6 1640 271 249 156 40 chr4 138312996 138313143 -17316977 + MIR3 SINE MIR 26 189 -19 6 1640 334 312 92 15 chr4 138313731 138313861 -17316259 - MER31B LTR ERV1 0 485 346 6 1640 673 280 46 0 chr4 138313880 138314055 -17316065 + ID_B1 SINE B4 37 219 -5 6 1640 872 214 97 0 chr4 138314069 138314221 -17315899 + B3 SINE B2 2 167 -49 6 1640 318 107 0 0 chr4 138314221 138314277 -17315843 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1640 872 214 97 0 chr4 138314277 138314320 -17315800 + B3 SINE B2 168 215 -1 6 1640 734 218 120 21 chr4 138314322 138314514 -17315606 + B3 SINE B2 5 215 -1 6 1640 945 145 14 7 chr4 138314524 138314670 -17315450 + B1_Mus2 SINE Alu 1 147 0 6 1640 459 347 54 67 chr4 138314763 138315078 -17315042 - MER31B LTR ERV1 -150 316 6 6 1640 1083 75 0 0 chr4 138315388 138315534 -17314586 + (TC)n Simple_repeat Simple_repeat 1 146 0 6 1640 464 250 96 60 chr4 138316842 138317008 -17313112 - MLT1B LTR MaLR -218 172 1 6 1640 1488 84 16 0 chr4 138317141 138317332 -17312788 - B2_Mm2 SINE B2 0 195 2 6 1640 289 266 0 32 chr4 138317390 138317528 -17312592 + L1MB3 LINE L1 3767 3896 -2250 6 1640 270 81 0 0 chr4 138317679 138317716 -17312404 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1640 482 277 0 9 chr4 138317749 138317862 -17312258 + PB1D9 SINE Alu 3 114 -6 6 1640 259 80 180 0 chr4 138317889 138317939 -17312181 + B1_Mur4 SINE Alu 92 150 0 6 1640 405 235 41 57 chr4 138318185 138318307 -17311813 + PB1D9 SINE Alu 1 120 0 6 1640 447 246 52 7 chr4 138318521 138318656 -17311464 + B1F1 SINE Alu 9 149 0 6 1640 310 297 129 69 chr4 138318697 138318762 -17311358 + L1MB3 LINE L1 4267 4321 -1825 6 1640 1275 107 51 0 chr4 138318762 138318939 -17311181 - B2_Mm2 SINE B2 -8 187 2 6 1640 310 297 129 69 chr4 138318939 138319090 -17311030 + L1MB3 LINE L1 4322 4496 -1650 6 1640 274 340 10 10 chr4 138319090 138319188 -17310932 + L1MB3 LINE L1 4899 4996 -1150 6 1640 320 267 0 13 chr4 138319188 138319264 -17310856 + B3A SINE B2 1 75 -123 6 1640 398 268 44 9 chr4 138319307 138319420 -17310700 + PB1D10 SINE Alu 1 117 0 6 1640 425 302 54 8 chr4 138319436 138319566 -17310554 + ID_B1 SINE B4 3 138 -86 6 1640 717 12 0 0 chr4 138319566 138319648 -17310472 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1640 410 257 8 66 chr4 138319696 138319817 -17310303 + PB1D10 SINE Alu 3 116 -1 6 1640 683 298 132 24 chr4 138319836 138320458 -17309662 + L1MB3 LINE L1 5031 5728 -446 6 1640 856 231 126 0 chr4 138320566 138320813 -17309307 + B4A SINE B4 15 292 0 6 1640 512 190 23 23 chr4 138320823 138320995 -17309125 + (CATA)n Simple_repeat Simple_repeat 3 174 0 6 1640 788 174 0 11 chr4 138321041 138321221 -17308899 + (CATA)n Simple_repeat Simple_repeat 1 178 0 6 1640 405 241 82 18 chr4 138321548 138321658 -17308462 + PB1D10 SINE Alu 1 117 0 6 1640 690 284 94 0 chr4 138321678 138321879 -17308241 + ID_B1 SINE B4 3 222 -2 6 1640 735 279 87 49 chr4 138321937 138322325 -17307795 + L1MB3 LINE L1 5793 6182 -2 6 1640 220 292 93 9 chr4 138322381 138322488 -17307632 + PB1D10 SINE Alu 2 117 0 6 1640 823 183 156 0 chr4 138322490 138322670 -17307450 + B3 SINE B2 2 209 -7 6 1640 413 267 0 0 chr4 138322697 138322783 -17307337 + B3A SINE B2 40 125 -73 6 1640 267 31 0 0 chr4 138322796 138322828 -17307292 + (CCA)n Simple_repeat Simple_repeat 1 32 0 6 1640 230 333 25 0 chr4 138322973 138323054 -17307066 + ID4 SINE ID 1 83 0 6 1640 293 238 47 12 chr4 138323099 138323184 -17306936 + L1M LINE L1 5318 5405 -774 6 1640 280 210 33 25 chr4 138323203 138323325 -17306795 + CT-rich Low_complexity Low_complexity 3 125 0 6 1640 556 290 17 29 chr4 138323369 138323543 -17306577 - B4A SINE B4 -120 172 1 6 1640 545 196 0 35 chr4 138323589 138323705 -17306415 + BC1_Mm scRNA scRNA 3 114 -38 6 1640 188 243 0 0 chr4 138323705 138323742 -17306378 - MIR SINE MIR -110 152 116 6 1640 705 252 54 125 chr4 138324017 138324330 -17305790 - B4A SINE B4 0 292 2 6 1640 285 329 99 25 chr4 138324332 138324494 -17305626 - MLT1B LTR MaLR -60 330 157 6 1640 423 328 23 8 chr4 138324511 138324640 -17305480 - B1F SINE Alu -18 131 1 6 1640 749 168 27 27 chr4 138325100 138325236 -17304884 + B1_Mm SINE Alu 1 137 -10 6 1640 270 0 0 0 chr4 138325236 138325266 -17304854 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1640 22 35 0 0 chr4 138325423 138325452 -17304668 + AT_rich Low_complexity Low_complexity 1 29 0 6 1640 347 266 82 143 chr4 138325452 138325768 -17304352 - B4A SINE B4 -15 277 8 6 1640 227 145 28 28 chr4 138326131 138326202 -17303918 + CT-rich Low_complexity Low_complexity 3 73 0 6 1640 462 61 0 0 chr4 138326202 138326268 -17303852 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1640 605 239 82 23 chr4 138326270 138326441 -17303679 - B4 SINE B4 -104 188 8 6 1640 402 295 58 46 chr4 138327327 138327501 -17302619 + MIRb SINE MIR 43 218 -50 6 1640 983 231 51 95 chr4 138327610 138327906 -17302214 - B4A SINE B4 -9 283 1 6 1640 302 252 161 9 chr4 138328313 138328425 -17301695 + L1MEc LINE L1 999 1127 -5273 6 1640 483 242 49 30 chr4 138328622 138328770 -17301350 - B1F2 SINE Alu 0 149 2 6 1640 259 378 105 0 chr4 138329099 138329271 -17300849 - MIRb SINE MIR -62 206 17 6 1640 302 295 39 118 chr4 138329728 138329855 -17300265 - PB1D7 SINE Alu 0 117 1 6 1640 213 319 10 78 chr4 138329950 138330052 -17300068 + PB1D7 SINE Alu 25 119 -1 6 1640 731 89 0 18 chr4 138330052 138330166 -17299954 + (GGGA)n Simple_repeat Simple_repeat 1 112 0 6 1640 706 303 14 24 chr4 138330663 138330876 -17299244 + ID_B1 SINE B4 1 211 -13 6 1640 390 239 61 0 chr4 138330981 138331144 -17298976 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 6 1640 872 123 7 0 chr4 138331197 138331343 -17298777 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 6 1640 221 263 0 0 chr4 138331449 138331506 -17298614 + ID4 SINE ID 12 68 -15 6 1640 719 165 0 0 chr4 138332150 138332265 -17297855 + B1_Mus1 SINE Alu 1 115 -33 6 1640 333 82 0 0 chr4 138332404 138332453 -17297667 + (CCA)n Simple_repeat Simple_repeat 3 51 0 6 1640 411 293 0 0 chr4 138332845 138332944 -17297176 + PB1D7 SINE Alu 1 99 -21 6 1640 341 238 24 0 chr4 138334053 138334137 -17295983 + B4 SINE B4 137 222 -70 6 1640 197 226 0 102 chr4 138334752 138334811 -17295309 - MIRm SINE MIR -2 274 222 6 1640 301 304 38 1 chr4 138334987 138335103 -17295017 + MIR SINE MIR 87 217 -51 6 1640 330 284 55 0 chr4 138336965 138337074 -17293046 + LTR16A1 LTR ERVL 328 442 -14 6 1640 2941 110 36 63 chr4 138337338 138337420 -17292700 + RLTR28B LTR ERVL 1 82 -399 6 1640 464 0 0 18 chr4 138337420 138337477 -17292643 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 6 1640 2941 110 36 63 chr4 138337477 138337605 -17292515 + RLTR28B LTR ERVL 83 216 -265 6 1640 1159 54 0 20 chr4 138337605 138337755 -17292365 + B1_Mus1 SINE Alu 2 148 0 6 1640 2941 110 36 63 chr4 138337755 138338037 -17292083 + RLTR28B LTR ERVL 217 480 -1 6 1640 202 227 0 22 chr4 138338509 138338554 -17291566 + GA-rich Low_complexity Low_complexity 3 46 0 6 1640 778 238 0 0 chr4 138339169 138339320 -17290800 + ID_B1 SINE B4 5 155 -69 6 1640 806 180 0 7 chr4 138339340 138339480 -17290640 + B1_Mur4 SINE Alu 6 144 -6 6 1640 591 15 0 0 chr4 138339482 138339550 -17290570 + (GGA)n Simple_repeat Simple_repeat 3 70 0 6 1640 3258 56 13 0 chr4 138339570 138339965 -17290155 + MTB LTR MaLR 1 400 0 6 1640 441 54 0 0 chr4 138341441 138341497 -17288623 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1640 581 74 21 0 chr4 138341497 138341592 -17288528 + (CAGAGA)n Simple_repeat Simple_repeat 2 98 0 6 1640 515 273 54 65 chr4 138341968 138342152 -17287968 - ID_B1 SINE B4 -37 187 6 6 1640 186 43 0 0 chr4 138342437 138342460 -17287660 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1640 1448 48 21 26 chr4 138342464 138342658 -17287462 + B2_Mm2 SINE B2 3 195 0 6 1640 499 201 16 36 chr4 138343122 138343374 -17286746 + CT-rich Low_complexity Low_complexity 1 247 0 6 1640 236 230 0 86 chr4 138343421 138343502 -17286618 - ID_B1 SINE B4 -37 187 114 6 1640 251 296 13 0 chr4 138343659 138343764 -17286356 + MIR SINE MIR 25 133 -143 6 1640 210 244 0 0 chr4 138344284 138344325 -17285795 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1640 627 14 0 0 chr4 138344737 138344809 -17285311 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1640 384 234 0 0 chr4 138345577 138345671 -17284449 + (TAGA)n Simple_repeat Simple_repeat 2 95 0 6 1640 793 204 5 65 chr4 138345721 138345876 -17284244 + B2_Mm2 SINE B2 1 156 -39 7 1640 564 0 40 0 chr4 138345876 138345952 -17284168 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1640 793 204 5 65 chr4 138345952 138345995 -17284125 + B2_Mm2 SINE B2 157 187 -8 7 1640 562 235 49 42 chr4 138346351 138346493 -17283627 + RSINE1 SINE B4 5 147 -18 7 1640 206 156 0 22 chr4 138346628 138346674 -17283446 + CT-rich Low_complexity Low_complexity 3 47 0 7 1640 301 269 108 20 chr4 138346676 138346824 -17283296 - HAL1-3A_ME LINE L1 -414 2444 2284 7 1640 206 174 22 0 chr4 138346825 138346871 -17283249 + CT-rich Low_complexity Low_complexity 4 50 0 7 1640 292 343 0 10 chr4 138346994 138347097 -17283023 - ID_B1 SINE B4 -42 182 81 7 1640 265 320 66 28 chr4 138347116 138347222 -17282898 - PB1D10 SINE Alu -1 116 7 7 1640 1017 290 46 14 chr4 138347294 138347577 -17282543 - B4A SINE B4 0 292 1 7 1640 468 350 15 61 chr4 138349017 138349215 -17280905 + B4A SINE B4 21 209 -83 7 1640 183 42 0 0 chr4 138349238 138349262 -17280858 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1640 221 356 30 42 chr4 138349827 138349994 -17280126 - MIRb SINE MIR -12 256 92 7 1640 634 323 0 29 chr4 138350031 138350056 -17280064 - B3A SINE B2 0 198 174 7 1640 423 38 0 0 chr4 138350056 138350109 -17280011 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1640 634 323 0 29 chr4 138350109 138350287 -17279833 - B3A SINE B2 -25 173 2 7 1640 604 179 0 124 chr4 138350294 138350447 -17279673 - ID_B1 SINE B4 -7 217 84 7 1640 1992 135 17 86 chr4 138350941 138351347 -17278773 + RLTR1B LTR ERV1 135 512 0 7 1640 381 181 53 0 chr4 138351373 138351462 -17278658 + B1_Mur1 SINE Alu 1 135 -14 7 1640 276 212 0 15 chr4 138351477 138351544 -17278576 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 7 1640 307 183 12 12 chr4 138351561 138351644 -17278476 + GA-rich Low_complexity Low_complexity 2 84 0 7 1640 331 279 29 92 chr4 138352006 138352180 -17277940 - ERVL-E-int LTR ERVL -5300 367 205 7 1640 641 142 50 8 chr4 138352279 138352400 -17277720 + B1_Mus2 SINE Alu 1 126 -21 7 1640 401 271 41 140 chr4 138352607 138352899 -17277221 - MLT2F LTR ERVL -117 546 284 7 1640 267 263 0 0 chr4 138353500 138353579 -17276541 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1640 203 207 35 0 chr4 138354630 138354688 -17275432 + (CATG)n Simple_repeat Simple_repeat 1 60 0 7 1640 376 182 28 75 chr4 138354696 138354758 -17275362 - HAL1-3A_ME LINE L1 -829 2029 1975 7 1640 799 230 109 123 chr4 138354758 138355051 -17275069 - B4 SINE B4 0 292 4 7 1640 376 182 28 75 chr4 138355051 138355095 -17275025 - HAL1-3A_ME LINE L1 -884 1974 1928 7 1640 537 273 31 0 chr4 138355531 138355659 -17274461 - ID_B1 SINE B4 -7 217 86 7 1640 664 285 40 25 chr4 138357651 138357849 -17272271 + MER65D LTR ERV1 156 356 -117 7 1640 2220 123 11 25 chr4 138358112 138358469 -17271651 + ORR1B2 LTR MaLR 1 352 -15 7 1640 1182 247 138 37 chr4 138358475 138358687 -17271433 + ORR1D-int LTR MaLR 396 642 -728 7 1640 602 182 69 55 chr4 138358687 138358832 -17271288 + B1_Mus1 SINE Alu 2 148 0 7 1640 1182 247 138 37 chr4 138358832 138359048 -17271072 + ORR1D-int LTR MaLR 643 866 -504 7 1640 686 239 217 9 chr4 138359028 138359254 -17270866 - B4A SINE B4 -19 273 1 7 1640 398 209 130 0 chr4 138359254 138359369 -17270751 - L1MC3 LINE L1 -1173 6612 6483 7 1640 333 310 42 17 chr4 138359601 138359719 -17270401 + MLT2B1 LTR ERVL 8 128 -392 7 1640 655 200 108 0 chr4 138359969 138360099 -17270021 + B1_Mur2 SINE Alu 1 144 -5 7 1640 758 230 29 73 chr4 138360112 138360318 -17269802 - B3A SINE B2 0 198 2 7 1640 676 271 90 5 chr4 138360723 138360923 -17269197 + ID_B1 SINE B4 1 217 -7 7 1640 2181 147 61 3 chr4 138361191 138361552 -17268568 + RLTR14 LTR ERV1 1 382 0 7 1640 227 167 48 0 chr4 138361622 138361664 -17268456 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 7 1640 675 218 127 0 chr4 138362493 138362635 -17267485 + RSINE1 SINE B4 5 164 -1 7 1640 497 312 11 28 chr4 138363807 138363985 -17266135 + B4 SINE B4 1 175 -117 7 1640 443 100 14 0 chr4 138364011 138364081 -17266039 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1640 1029 40 0 0 chr4 138364109 138364235 -17265885 + (GGAGA)n Simple_repeat Simple_repeat 3 128 0 7 1640 180 217 0 0 chr4 138364374 138364420 -17265700 + CT-rich Low_complexity Low_complexity 3 48 0 7 1640 335 323 39 77 chr4 138364422 138364435 -17265685 + MER74B LTR ERVL 69 81 -541 7 1640 942 202 92 19 chr4 138364435 138364642 -17265478 - ID_B1 SINE B4 0 224 3 7 1640 335 323 39 77 chr4 138364642 138364836 -17265284 + MER74B LTR ERVL 82 268 -354 7 1640 253 197 131 0 chr4 138366091 138366152 -17263968 + MIRc SINE MIR 74 142 -126 7 1640 234 81 0 0 chr4 138366506 138366543 -17263577 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 7 1640 360 330 180 0 chr4 138366590 138366790 -17263330 - B4A SINE B4 -55 237 2 7 1640 290 281 21 10 chr4 138367114 138367211 -17262909 - RSINE1 SINE B4 -10 155 58 7 1640 526 202 486 13 chr4 138367312 138367462 -17262658 + ID_B1 SINE B4 4 224 0 7 1640 309 26 0 0 chr4 138367714 138367752 -17262368 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1640 972 228 70 30 chr4 138369044 138369315 -17260805 + B4 SINE B4 7 288 -4 7 1640 596 297 66 0 chr4 138369746 138369928 -17260192 + ID_B1 SINE B4 22 215 -9 7 1640 722 261 43 14 chr4 138371174 138371384 -17258736 + ID_B1 SINE B4 9 224 0 7 1640 476 220 62 41 chr4 138371432 138371580 -17258540 - B1F1 SINE Alu 0 149 2 7 1640 278 283 0 117 chr4 138371475 138371595 -17258525 - MT2B2 LTR ERVL -326 258 153 7 1640 922 219 69 15 chr4 138371595 138371799 -17258321 - B3 SINE B2 -1 215 1 7 1640 249 389 75 5 chr4 138372056 138372242 -17257878 + L2b LINE L2 3104 3302 -73 7 1640 237 278 119 9 chr4 138372592 138372701 -17257419 - L2a LINE L2 -317 3109 2989 7 1640 343 312 55 0 chr4 138372942 138373134 -17256986 + L1MA4A LINE L1 5724 5936 -361 7 1640 688 158 0 0 chr4 138373319 138373433 -17256687 + RSINE1 SINE B4 8 121 -44 7 1640 369 0 0 0 chr4 138373434 138373475 -17256645 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1640 332 219 83 98 chr4 138373760 138373892 -17256228 + MER57C2 LTR ERV1 247 376 -58 7 1640 518 239 231 53 chr4 138374288 138374535 -17255585 + B4A SINE B4 2 292 0 7 1640 350 213 0 11 chr4 138375786 138375881 -17254239 + GA-rich Low_complexity Low_complexity 4 97 0 7 1640 316 65 0 61 chr4 138376011 138376077 -17254043 + (TCTCTG)n Simple_repeat Simple_repeat 3 64 0 7 1640 867 213 63 15 chr4 138376198 138376403 -17253717 - B3 SINE B2 0 216 2 7 1640 5490 156 31 19 chr4 138376428 138377285 -17252835 + RMER1B Other Other 1 867 -199 7 1640 1615 32 16 16 chr4 138377285 138377478 -17252642 + B2_Mm2 SINE B2 2 194 -1 7 1640 5490 156 31 19 chr4 138377478 138377565 -17252555 + RMER1B Other Other 868 956 -110 7 1640 2755 28 33 11 chr4 138377594 138377953 -17252167 + RLTR10C LTR ERVK 1 367 -69 7 1640 344 301 80 84 chr4 138378211 138378461 -17251659 - ORR1D2 LTR MaLR -98 272 24 7 1640 1402 247 55 35 chr4 138378499 138378898 -17251222 - MTD LTR MaLR -8 411 5 7 1640 504 216 16 23 chr4 138378957 138379085 -17251035 - MTEa LTR MaLR 0 379 253 7 1640 198 0 0 0 chr4 138379258 138379280 -17250840 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 1640 441 0 0 0 chr4 138379281 138379330 -17250790 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1640 484 196 87 10 chr4 138379333 138379436 -17250684 - RSINE1 SINE B4 -21 144 34 7 1640 865 190 9 13 chr4 138379568 138379746 -17250374 + MTD LTR MaLR 46 205 -214 7 1640 229 254 15 0 chr4 138379813 138379880 -17250240 + L1M2 LINE L1 4580 4647 -1496 7 1640 868 153 30 1 chr4 138380135 138380310 -17249810 + B2_Mm2 SINE B2 2 189 -27 7 1640 1340 91 11 0 chr4 138380320 138380496 -17249624 + B2_Mm1t SINE B2 2 179 -14 7 1640 43 35 0 0 chr4 138380505 138380562 -17249558 + AT_rich Low_complexity Low_complexity 1 57 0 7 1640 275 23 23 0 chr4 138380562 138380606 -17249514 + B2_Mm1t SINE B2 135 179 -14 7 1640 504 56 321 45 chr4 138380619 138380731 -17249389 + B2_Mm2 SINE B2 47 189 -6 7 1640 1942 256 38 34 chr4 138380743 138381273 -17248847 + Lx6 LINE L1 6571 7460 0 7 1640 489 76 0 0 chr4 138381273 138381339 -17248781 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 7 1640 296 293 0 0 chr4 138381380 138381455 -17248665 + BC1_Mm scRNA scRNA 3 77 -75 7 1640 582 15 0 0 chr4 138381595 138381662 -17248458 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1640 446 0 19 0 chr4 138381662 138381715 -17248405 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1640 426 305 87 25 chr4 138382519 138382795 -17247325 - L1M2 LINE L1 -2100 4043 3751 7 1640 662 163 32 0 chr4 138383267 138383390 -17246730 - U1 snRNA snRNA -22 143 17 7 1640 644 247 80 35 chr4 138384177 138384378 -17245742 - MLT1C LTR MaLR -257 210 1 7 1640 1074 122 0 0 chr4 138384416 138384564 -17245556 - B1_Mur4 SINE Alu -2 148 1 7 1640 4150 233 40 72 chr4 138385254 138386617 -17243503 + RMER12 LTR ERVK 1 1319 -3 7 1640 820 295 12 106 chr4 138386678 138387000 -17243120 + B4 SINE B4 1 292 0 7 1640 667 252 82 10 chr4 138390252 138390460 -17239660 + ID_B1 SINE B4 2 224 0 7 1640 931 261 41 61 chr4 138391190 138391484 -17238636 + B4 SINE B4 1 288 -4 7 1640 420 220 103 60 chr4 138392566 138392682 -17237438 + RSINE1 SINE B4 45 165 0 7 1640 270 116 0 0 chr4 138392718 138392761 -17237359 + (CAT)n Simple_repeat Simple_repeat 3 45 0 7 1640 260 357 18 43 chr4 138392799 138392963 -17237157 + MER65-int LTR ERV1 1464 1623 -3248 7 1640 627 14 0 0 chr4 138392965 138393037 -17237083 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1640 225 333 0 143 chr4 138393107 138393144 -17236976 - B4A SINE B4 -145 147 116 8 1640 3196 51 8 22 chr4 138393144 138393546 -17236574 + MTA_Mm LTR MaLR 1 396 0 8 1640 7193 79 37 80 chr4 138393546 138394694 -17235426 + MTA_Mm-int LTR MaLR 1 1098 0 8 1640 2446 69 134 6 chr4 138394694 138395045 -17235075 + MTA_Mm LTR MaLR 1 396 0 8 1640 225 333 0 143 chr4 138395045 138395145 -17234975 - B4A SINE B4 -177 115 30 8 1640 512 319 29 5 chr4 138395292 138395500 -17234620 + MER65-int LTR ERV1 1910 2122 -2749 7 1640 274 262 38 0 chr4 138395562 138395642 -17234478 + MER65-int LTR ERV1 2296 2378 -2493 7 1640 943 148 0 0 chr4 138395645 138395780 -17234340 + B1_Mus2 SINE Alu 1 135 -12 8 1640 1156 287 42 25 chr4 138395810 138396164 -17233956 + MTE2b LTR MaLR 20 379 0 8 1640 443 220 77 0 chr4 138397225 138397316 -17232804 + B1F SINE Alu 1 98 -51 8 1640 1971 119 3 152 chr4 138397869 138398244 -17231876 + ORR1A2 LTR MaLR 1 319 -8 8 1640 11025 127 21 90 chr4 138398248 138398701 -17231419 + ORR1A2-int LTR MaLR 1 451 -1512 8 1640 2895 52 0 0 chr4 138398701 138399049 -17231071 + L1Md_T LINE L1 6235 6582 0 8 1640 11025 127 21 90 chr4 138399049 138399151 -17230969 + ORR1A2-int LTR MaLR 452 521 -1442 8 1640 1632 36 5 0 chr4 138399151 138399343 -17230777 + B2_Mm1a SINE B2 1 193 0 8 1640 11025 127 21 90 chr4 138399343 138400878 -17229242 + ORR1A2-int LTR MaLR 522 1963 0 8 1640 561 291 13 20 chr4 138400878 138400894 -17229226 + RSINE1 SINE B4 16 29 -136 8 1640 2079 151 28 0 chr4 138400894 138401211 -17228909 + ORR1A3 LTR MaLR 1 326 0 8 1640 561 291 13 20 chr4 138401211 138401345 -17228775 + RSINE1 SINE B4 30 165 0 8 1640 259 328 0 0 chr4 138401964 138402028 -17228092 + RMER30 DNA MER1_type 138 201 -1 8 1640 747 267 110 0 chr4 138402461 138402652 -17227468 + ID_B1 SINE B4 7 218 -6 8 1640 271 248 55 67 chr4 138402944 138403078 -17227042 + L1M2 LINE L1 4159 4285 -1858 8 1640 2955 152 17 6 chr4 138403078 138403600 -17226520 + RLTR11A LTR ERVK 1 528 0 8 1640 271 248 55 67 chr4 138403600 138403629 -17226491 + L1M2 LINE L1 4286 4319 -1824 8 1640 811 169 0 0 chr4 138403655 138403779 -17226341 + B3 SINE B2 3 126 -90 8 1640 2408 66 76 0 chr4 138403787 138404091 -17226029 + ORR1A2 LTR MaLR 1 327 0 8 1640 228 250 100 148 chr4 138404185 138404495 -17225625 + RMER17C LTR ERVK 57 351 -59 8 1640 294 256 43 22 chr4 138404522 138404614 -17225506 + RodERV21-int LTR ERV1 17 110 -4881 8 1640 238 300 14 0 chr4 138404906 138404976 -17225144 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1640 470 324 0 6 chr4 138405585 138405765 -17224355 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1640 395 347 12 0 chr4 138405903 138406076 -17224044 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1640 348 326 14 0 chr4 138406103 138406250 -17223870 + (CA)n Simple_repeat Simple_repeat 2 150 0 8 1640 459 0 0 0 chr4 138406533 138406584 -17223536 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1640 309 375 54 0 chr4 138406661 138406773 -17223347 - PB1D7 SINE Alu 0 120 3 8 1640 296 241 17 0 chr4 138406833 138406891 -17223229 + B1_Mus2 SINE Alu 2 60 -87 8 1640 1291 136 77 14 chr4 138407806 138408015 -17222105 + URR1A DNA MER1_type 5 226 0 8 1640 220 314 68 0 chr4 138408157 138408252 -17221868 + B1F1 SINE Alu 10 111 -9 8 1640 390 127 0 0 chr4 138408507 138408578 -17221542 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1640 400 131 40 0 chr4 138408581 138408680 -17221440 + (TCTG)n Simple_repeat Simple_repeat 4 106 0 8 1640 334 130 0 18 chr4 138408683 138408738 -17221382 - HAL1-3A_ME LINE L1 -829 2029 1976 8 1640 531 201 135 27 chr4 138408745 138408893 -17221227 - RSINE1 SINE B4 0 165 2 8 1640 672 245 162 46 chr4 138409501 138409828 -17220292 - MTE2a LTR MaLR -14 405 51 8 1640 2320 209 39 14 chr4 138410057 138410543 -17219577 - RMER20A LTR ERVK -8 508 11 8 1640 474 283 124 23 chr4 138410598 138410775 -17219345 + MTC LTR MaLR 11 205 -216 8 1640 349 259 48 134 chr4 138410758 138410783 -17219337 + B4A SINE B4 76 156 -136 8 1640 875 119 36 22 chr4 138410783 138410920 -17219200 + B1_Mur3 SINE Alu 11 149 0 8 1640 349 259 48 134 chr4 138410920 138410945 -17219175 + B4A SINE B4 157 246 -46 8 1640 412 202 350 12 chr4 138410947 138411107 -17219013 + MTC LTR MaLR 194 407 0 8 1640 353 327 164 9 chr4 138411132 138411351 -17218769 - MER54A LTR ERVL -638 263 11 8 1640 657 313 67 51 chr4 138411360 138411673 -17218447 - MLT1B LTR MaLR -15 375 58 8 1640 572 202 0 52 chr4 138411662 138411777 -17218343 - ID_B1 SINE B4 -7 217 109 8 1640 440 268 30 38 chr4 138411777 138411794 -17218326 - B1F SINE Alu -7 142 12 8 1640 315 211 27 40 chr4 138411789 138411863 -17218257 - MLT1B LTR MaLR -394 73 1 8 1641 958 179 87 26 chr4 138412047 138412242 -17217878 - B3 SINE B2 -6 210 4 8 1641 916 231 181 13 chr4 138412326 138412641 -17217479 - ORR1D2 LTR MaLR 0 370 3 8 1641 604 320 62 77 chr4 138412762 138413114 -17217006 - ORR1E LTR MaLR -5 354 8 8 1641 1315 56 78 6 chr4 138413208 138413388 -17216732 + B2_Mm1a SINE B2 1 193 0 8 1641 350 245 63 11 chr4 138414240 138414335 -17215785 + B4 SINE B4 189 288 -4 8 1641 201 74 0 0 chr4 138414866 138414893 -17215227 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 8 1641 347 226 25 131 chr4 138415348 138415470 -17214650 + B3A SINE B2 90 198 0 8 1641 1034 144 0 6 chr4 138416572 138416753 -17213367 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1641 1347 72 0 0 chr4 138416756 138416936 -17213184 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1641 654 278 0 32 chr4 138416945 138417101 -17213019 + RSINE1 SINE B4 2 152 -13 8 1641 577 149 27 36 chr4 138417171 138417282 -17212838 - B1_Mur1 SINE Alu 0 149 40 8 1641 503 298 70 14 chr4 138417345 138417488 -17212632 - B4 SINE B4 -57 235 85 8 1641 395 292 17 0 chr4 138417931 138418051 -17212069 - L2 LINE L2 -794 2625 2504 8 1641 252 314 0 0 chr4 138418328 138418398 -17211722 - B3 SINE B2 -132 84 15 8 1641 249 311 18 64 chr4 138418696 138418806 -17211314 + Kanga1d DNA Tc2 4 108 -501 8 1641 979 150 0 7 chr4 138418845 138418993 -17211127 + B1_Mur4 SINE Alu 2 148 -2 8 1641 517 281 28 14 chr4 138419141 138419282 -17210838 - MER5A DNA MER1_type 0 189 47 8 1641 386 211 118 96 chr4 138419283 138419419 -17210701 - MTE2b LTR MaLR -26 353 215 8 1641 891 232 114 0 chr4 138419472 138419692 -17210428 - MTE2b LTR MaLR -134 245 1 8 1641 272 268 0 101 chr4 138420167 138420246 -17209874 - B3 SINE B2 -66 150 80 8 1641 268 325 31 31 chr4 138420460 138420590 -17209530 + MER20 DNA MER1_type 88 217 -2 8 1641 809 303 92 61 chr4 138421149 138421638 -17208482 - LTR79 LTR ERVL -21 506 3 8 1641 909 229 38 0 chr4 138421666 138421849 -17208271 + ID_B1 SINE B4 35 224 0 8 1641 239 294 29 14 chr4 138422479 138422548 -17207572 - B3 SINE B2 -47 169 100 8 1641 429 306 0 0 chr4 138424003 138424183 -17205937 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1641 937 241 45 30 chr4 138424200 138424469 -17205651 - B4A SINE B4 -19 273 1 8 1641 661 257 26 72 chr4 138424815 138424971 -17205149 + B3A SINE B2 15 171 -27 8 1641 315 71 0 0 chr4 138424971 138425013 -17205107 + (CACG)n Simple_repeat Simple_repeat 1 42 0 8 1641 661 257 26 72 chr4 138425013 138425049 -17205071 + B3A SINE B2 172 198 0 8 1641 3075 140 57 8 chr4 138425120 138425201 -17204919 - RLTR20C LTR ERVK -4 530 434 8 1641 405 0 0 0 chr4 138425201 138425246 -17204874 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1641 189 0 0 0 chr4 138425246 138425266 -17204854 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1641 3075 140 57 8 chr4 138425266 138425688 -17204432 - RLTR20C LTR ERVK -101 433 2 8 1641 3246 127 134 54 chr4 138425688 138426551 -17203569 - MYSERV16_I-int LTR ERVK 0 2326 1348 8 1641 198 286 0 35 chr4 138426551 138426609 -17203511 + L4 LINE RTE 582 637 -1392 8 1641 3246 127 134 54 chr4 138426609 138426869 -17203251 - MYSERV16_I-int LTR ERVK 0 1347 1051 8 1641 4257 192 37 49 chr4 138426864 138427971 -17202149 - MYSERV16_I-int LTR ERVK -1497 1345 1 8 1641 1228 54 0 0 chr4 138428418 138428565 -17201555 + B1_Mm SINE Alu 1 147 0 8 1641 255 189 12 86 chr4 138428683 138428764 -17201356 - MYSERV16_I-int LTR ERVK -2592 250 176 8 1641 1192 181 201 8 chr4 138429011 138429088 -17201032 - RLTR20C LTR ERVK -11 523 433 8 1641 393 86 0 0 chr4 138429088 138429146 -17200974 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1641 1192 181 201 8 chr4 138429146 138429336 -17200784 - RLTR20C LTR ERVK -102 432 204 8 1641 690 224 58 112 chr4 138429463 138429760 -17200360 + ORR1E LTR MaLR 75 379 0 8 1641 412 242 76 108 chr4 138430125 138430154 -17199966 - B2_Mm2 SINE B2 -10 185 152 8 1641 470 70 0 14 chr4 138430154 138430226 -17199894 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 1641 678 240 14 47 chr4 138430226 138430381 -17199739 - B3A SINE B2 -44 154 7 8 1641 182 267 49 16 chr4 138431254 138431315 -17198805 + L2b LINE L2 3307 3369 -6 8 1641 1268 240 69 103 chr4 138431348 138431504 -17198616 + MTEb LTR MaLR 16 195 -184 8 1641 540 0 0 0 chr4 138431504 138431564 -17198556 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1641 207 0 0 0 chr4 138431564 138431586 -17198534 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1641 1268 240 69 103 chr4 138431586 138431805 -17198315 + MTEb LTR MaLR 196 378 -1 8 1641 471 264 74 25 chr4 138431805 138431916 -17198204 - MTEb LTR MaLR -58 321 203 8 1641 651 112 0 0 chr4 138431917 138432033 -17198087 + (GA)n Simple_repeat Simple_repeat 2 117 0 8 1641 395 241 29 6 chr4 138432219 138432390 -17197730 + (TATG)n Simple_repeat Simple_repeat 4 178 0 8 1641 451 274 9 0 chr4 138432364 138432594 -17197526 + (TG)n Simple_repeat Simple_repeat 1 232 0 8 1641 857 261 105 16 chr4 138432630 138432887 -17197233 - B4A SINE B4 -12 280 1 8 1641 246 346 120 23 chr4 138432903 138433036 -17197084 - B1_Mur3 SINE Alu -1 148 3 8 1641 706 322 5 10 chr4 138433036 138433118 -17197002 - ID SINE ID -143 81 1 8 1641 279 0 0 0 chr4 138434583 138434614 -17195506 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1641 712 251 98 81 chr4 138435810 138436044 -17194076 + B4A SINE B4 55 292 0 8 1641 270 0 0 0 chr4 138438784 138438814 -17191306 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 8 1641 190 256 96 60 chr4 138438817 138438900 -17191220 - MIRm SINE MIR -15 261 176 8 1641 231 222 19 0 chr4 138439012 138439066 -17191054 + MurSatRep1 Unknown Unknown 227 281 -1856 8 1641 639 0 0 0 chr4 138439075 138439146 -17190974 + (TC)n Simple_repeat Simple_repeat 1 71 0 8 1641 1080 236 32 0 chr4 138439351 138439567 -17190553 - ID_B1 SINE B4 0 224 2 8 1641 181 283 48 32 chr4 138439567 138439629 -17190491 - MIR SINE MIR -57 151 89 8 1641 1181 62 14 0 chr4 138440647 138440792 -17189328 - B1_Mm SINE Alu 0 147 1 8 1641 1354 157 4 18 chr4 138441135 138441362 -17188758 + URR1B DNA MER1_type 2 225 0 8 1641 2656 59 6 0 chr4 138441484 138441807 -17188313 - ORR1A2 LTR MaLR -2 325 1 8 1641 241 223 21 0 chr4 138442091 138442185 -17187935 + (TGGA)n Simple_repeat Simple_repeat 1 96 0 8 1641 264 319 26 8 chr4 138442201 138442318 -17187802 + (TGGG)n Simple_repeat Simple_repeat 2 120 0 8 1641 328 308 47 6 chr4 138442263 138442433 -17187687 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 8 1641 444 37 0 0 chr4 138442840 138442894 -17187226 + (TGGA)n Simple_repeat Simple_repeat 2 55 0 9 1641 1417 63 0 5 chr4 138444568 138444758 -17185362 + B2_Mm2 SINE B2 2 190 -5 9 1641 991 254 16 14 chr4 138444786 138445035 -17185085 + ID_B1 SINE B4 11 256 -36 9 1641 659 241 114 35 chr4 138446137 138446339 -17183781 - ID_B1 SINE B4 -1 223 6 9 1641 675 0 0 0 chr4 138447388 138447463 -17182657 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 9 1641 228 67 0 0 chr4 138448041 138448071 -17182049 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 9 1641 727 130 0 47 chr4 138448195 138448324 -17181796 + B1_Mus2 SINE Alu 2 124 -23 9 1641 180 0 0 0 chr4 138448324 138448344 -17181776 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1641 272 213 40 13 chr4 138449764 138449776 -17180344 - ID_B1 SINE B4 -131 93 16 9 1641 278 234 16 0 chr4 138449776 138449840 -17180280 - ID4_ SINE ID -3 80 16 9 1641 255 140 329 13 chr4 138450630 138450721 -17179399 - B1F1 SINE Alu -34 115 6 9 1641 219 125 0 0 chr4 138452581 138452621 -17177499 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 9 1641 758 37 0 68 chr4 138455017 138455134 -17174986 + B1_Mm SINE Alu 39 147 0 9 1641 195 42 0 0 chr4 138455134 138455158 -17174962 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 9 1641 659 181 45 28 chr4 138455421 138455572 -17174548 + ORR1D1 LTR MaLR 204 371 -3 9 1641 417 206 41 0 chr4 138455606 138455703 -17174417 + L1MB7 LINE L1 5824 5924 -260 9 1641 436 244 32 56 chr4 138455997 138456123 -17173997 + ID_B1 SINE B4 101 223 -1 9 1641 671 234 103 0 chr4 138456143 138456318 -17173802 + B3 SINE B2 24 216 0 9 1641 251 287 41 110 chr4 138456356 138456501 -17173619 + B3A SINE B2 62 196 -2 9 1641 248 333 16 71 chr4 138456846 138456972 -17173148 + PB1D7 SINE Alu 2 120 0 9 1641 375 191 39 78 chr4 138457004 138457106 -17173014 + MT2B LTR ERVL 161 258 -343 9 1641 579 195 9 0 chr4 138457016 138457129 -17172991 + B1_Mus2 SINE Alu 13 126 -21 9 1641 557 265 30 24 chr4 138457438 138457604 -17172516 + B3 SINE B2 1 167 -49 9 1641 232 337 45 0 chr4 138458173 138458262 -17171858 - Arthur1B DNA Tip100 0 1225 1133 9 1641 1253 76 60 0 chr4 138459230 138459414 -17170706 + B2_Mm2 SINE B2 1 195 0 9 1641 321 26 0 0 chr4 138462159 138462197 -17167923 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1641 861 244 34 45 chr4 138462692 138462958 -17167162 - MTD LTR MaLR -156 263 1 9 1641 28 0 0 0 chr4 138463615 138463643 -17166477 + AT_rich Low_complexity Low_complexity 1 28 0 9 1641 212 220 60 0 chr4 138463652 138463702 -17166418 - PB1D7 SINE Alu -65 55 3 9 1641 180 0 0 0 chr4 138463737 138463757 -17166363 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 9 1641 185 0 40 0 chr4 138463761 138463786 -17166334 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 9 1641 355 132 0 112 chr4 138464070 138464267 -17165853 + C-rich Low_complexity Low_complexity 3 177 0 9 1641 388 255 11 0 chr4 138464381 138464475 -17165645 + ID_B1 SINE B4 3 97 -127 9 1641 21 0 0 0 chr4 138464946 138464967 -17165153 + AT_rich Low_complexity Low_complexity 1 21 0 9 1641 553 257 52 19 chr4 138466544 138466754 -17163366 - MER20 DNA MER1_type -2 217 1 9 1641 722 100 58 0 chr4 138467034 138467154 -17162966 + B1_Mus2 SINE Alu 21 147 0 9 1641 541 183 121 32 chr4 138467804 138467928 -17162192 + B1_Mur2 SINE Alu 3 137 -12 9 1641 351 0 0 0 chr4 138467928 138467967 -17162153 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1641 563 166 103 22 chr4 138468293 138468429 -17161691 - B1_Mus2 SINE Alu 0 147 1 9 1641 410 191 215 19 chr4 138468725 138468832 -17161288 + B1_Mur1 SINE Alu 14 141 -8 9 1641 805 48 2 7 chr4 138470124 138470263 -17159857 + B1_Mus2 SINE Alu 3 138 -9 9 1641 612 258 37 26 chr4 138470334 138470525 -17159595 + B4A SINE B4 4 196 -96 9 1641 811 194 6 6 chr4 138470523 138470684 -17159436 - MTC LTR MaLR -72 349 189 9 1641 293 288 102 48 chr4 138470669 138470855 -17159265 - RMER17C LTR ERVK -34 376 181 9 1641 855 101 94 0 chr4 138470991 138471129 -17158991 - MTC LTR MaLR -212 209 59 9 1641 414 128 12 25 chr4 138471129 138471209 -17158911 + MTC LTR MaLR 343 421 0 9 1641 663 250 33 43 chr4 138471382 138471566 -17158554 + B3A SINE B2 1 182 -16 9 1641 874 161 11 0 chr4 138471566 138471740 -17158380 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1641 232 308 64 18 chr4 138472098 138472207 -17157913 - MER81 DNA AcHobo 0 114 1 9 1641 448 241 42 14 chr4 138472365 138472508 -17157612 + B1F SINE Alu 1 147 -2 9 1641 864 283 0 20 chr4 138472512 138472757 -17157363 - RMER15 LTR ERVL -79 496 257 9 1641 349 262 55 27 chr4 138472754 138472864 -17157256 - RMER15 LTR ERVL -462 113 1 9 1641 607 258 42 30 chr4 138473311 138473479 -17156641 + B3A SINE B2 29 198 0 9 1641 573 250 176 13 chr4 138473601 138473828 -17156292 + MTE2a-int LTR MaLR 1314 1577 -3 9 1641 962 267 51 41 chr4 138473812 138474184 -17155936 + MTE2a LTR MaLR 3 371 -48 9 1641 631 315 33 63 chr4 138474179 138474514 -17155606 + RLTR11B LTR ERVK 6 330 -123 9 1641 346 255 18 18 chr4 138474518 138474630 -17155490 + RLTR11B LTR ERVK 284 395 -58 9 1641 2960 52 36 5 chr4 138474713 138475097 -17155023 - MTA_Mm LTR MaLR 0 396 1 9 1641 234 129 0 0 chr4 138475099 138475145 -17154975 + MTE2a LTR MaLR 312 369 -10 9 1641 279 298 0 21 chr4 138475462 138475558 -17154562 - L1M2 LINE L1 -785 5515 5422 9 1641 1219 71 0 12 chr4 138475561 138475731 -17154389 - B2_Mm2 SINE B2 -27 168 1 9 1641 237 65 0 0 chr4 138475745 138475776 -17154344 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1641 353 279 67 40 chr4 138475792 138476016 -17154104 - L1_Rod LINE L1 -500 5347 5118 9 1641 1089 22 0 22 chr4 138476226 138476363 -17153757 + B1_Mus2 SINE Alu 1 134 -13 9 1641 252 0 0 0 chr4 138476363 138476391 -17153729 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 1641 297 75 0 0 chr4 138476496 138476536 -17153584 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1641 684 285 94 61 chr4 138477211 138477488 -17152632 - B4A SINE B4 0 292 7 9 1641 279 133 0 0 chr4 138478559 138478604 -17151516 + (CACG)n Simple_repeat Simple_repeat 1 45 0 9 1641 631 211 0 29 chr4 138478610 138478747 -17151373 - B1F SINE Alu -16 133 1 9 1641 235 260 0 72 chr4 138478684 138478767 -17151353 - B4A SINE B4 -147 145 69 9 1641 1158 41 0 45 chr4 138478831 138478985 -17151135 + B1_Mus2 SINE Alu 1 147 0 9 1641 229 286 88 0 chr4 138479433 138479524 -17150596 + PB1 SINE Alu 4 102 -25 9 1641 577 244 0 23 chr4 138479443 138479573 -17150547 + ID_B1 SINE B4 95 221 -3 9 1641 468 154 29 0 chr4 138479573 138479677 -17150443 + GA-rich Low_complexity Low_complexity 1 107 0 9 1641 773 347 13 16 chr4 138479867 138480172 -17149948 - Tigger7 DNA MER2_type -2146 345 42 9 1641 201 195 0 0 chr4 138480347 138480388 -17149732 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1641 795 196 0 0 chr4 138480379 138480547 -17149573 + (TA)n Simple_repeat Simple_repeat 1 168 0 9 1641 665 209 13 13 chr4 138480609 138480764 -17149356 + B3A SINE B2 28 182 -16 9 1641 927 183 74 25 chr4 138480821 138481023 -17149097 + B3 SINE B2 4 215 -1 9 1641 913 133 21 0 chr4 138481047 138481190 -17148930 + B1_Mur4 SINE Alu 5 150 0 9 1641 1024 154 0 17 chr4 138481193 138481351 -17148769 + B2_Mm2 SINE B2 2 158 -37 9 1641 366 23 0 0 chr4 138481351 138481394 -17148726 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 9 1641 1024 154 0 17 chr4 138481394 138481407 -17148713 + B2_Mm2 SINE B2 159 170 -25 9 1641 614 13 13 0 chr4 138481407 138481482 -17148638 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 9 1641 255 125 0 0 chr4 138481844 138481884 -17148236 + (GGA)n Simple_repeat Simple_repeat 1 40 0 9 1641 423 252 0 43 chr4 138482228 138482344 -17147776 - B3A SINE B2 -87 111 1 9 1641 363 221 75 69 chr4 138482349 138482509 -17147611 + MER44A DNA MER2_type 91 251 -88 9 1641 2719 248 136 40 chr4 138482835 138483928 -17146192 + Lx6 LINE L1 5992 7460 0 9 1641 436 16 33 0 chr4 138484233 138484294 -17145826 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1641 228 135 0 0 chr4 138484958 138484995 -17145125 + (TTCG)n Simple_repeat Simple_repeat 4 40 0 9 1641 864 55 0 0 chr4 138485005 138485115 -17145005 + (TTTA)n Simple_repeat Simple_repeat 4 113 0 9 1641 824 97 0 31 chr4 138485140 138485268 -17144852 - B2_Mm2 SINE B2 -70 125 2 9 1641 591 248 8 8 chr4 138485341 138485475 -17144645 + RSINE1 SINE B4 10 143 -22 9 1641 360 0 0 0 chr4 138485490 138485530 -17144590 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1641 899 131 14 14 chr4 138485576 138485723 -17144397 - B1_Mus1 SINE Alu 0 148 2 9 1641 715 224 73 24 chr4 138486599 138486805 -17143315 + MTD LTR MaLR 179 394 -25 9 1641 676 270 46 28 chr4 138487013 138487230 -17142890 + ID_B1 SINE B4 1 221 -3 9 1641 544 296 29 88 chr4 138487476 138487650 -17142470 - B3A SINE B2 0 198 35 9 1641 781 229 128 80 chr4 138487650 138488001 -17142119 + RLTR9A LTR ERVK 1 368 0 9 1641 544 296 29 88 chr4 138488001 138488030 -17142090 - B3A SINE B2 -164 34 7 9 1641 455 318 0 30 chr4 138488062 138488195 -17141925 - RSINE1 SINE B4 -34 131 3 9 1641 914 122 7 0 chr4 138488209 138488357 -17141763 + (TCCA)n Simple_repeat Simple_repeat 1 149 0 9 1641 779 87 2 1 chr4 138488954 138489073 -17141047 - B1_Mus1 SINE Alu 0 120 2 9 1641 452 261 50 8 chr4 138488970 138489090 -17141030 - B4 SINE B4 -98 194 70 9 1641 266 239 0 43 chr4 138489074 138489144 -17140976 - B4A SINE B4 -60 232 166 9 1641 222 37 0 0 chr4 138489272 138489299 -17140821 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1641 1134 36 0 0 chr4 138489317 138489455 -17140665 - B1_Mus2 SINE Alu -9 138 1 1 1641 285 281 61 0 chr4 138489642 138489724 -17140396 - PB1D9 SINE Alu -8 112 26 1 1641 223 304 35 149 chr4 138490576 138490611 -17139509 - B3A SINE B2 -20 178 1 1 1641 686 210 60 24 chr4 138490611 138490777 -17139343 - B4 SINE B4 -120 172 1 9 1641 417 39 0 0 chr4 138491004 138491055 -17139065 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1641 549 0 0 0 chr4 138491328 138491389 -17138731 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1641 1391 69 5 5 chr4 138491881 138492071 -17138049 - B2_Mm2 SINE B2 -4 191 2 1 1641 507 13 78 0 chr4 138492091 138492168 -17137952 - L1Md_F3 LINE L1 -2 6582 6500 1 1641 880 219 43 0 chr4 138492171 138492358 -17137762 - B3 SINE B2 -20 196 2 1 1641 261 309 0 12 chr4 138492592 138492674 -17137446 - ID4 SINE ID -2 81 1 1 1641 599 221 110 0 chr4 138492861 138492988 -17137132 + B1_Mur2 SINE Alu 1 141 -8 1 1641 369 299 5 92 chr4 138493102 138493286 -17136834 - MT2B LTR ERVL -267 334 167 1 1641 834 94 0 8 chr4 138493159 138493287 -17136833 - B1_Mus1 SINE Alu -20 128 2 1 1641 478 227 71 83 chr4 138493287 138493329 -17136791 - B4 SINE B4 -195 97 58 1 1641 199 281 62 0 chr4 138493555 138493619 -17136501 - MIRb SINE MIR -145 123 56 1 1641 333 325 59 46 chr4 138493640 138493836 -17136284 - MLT1J LTR MaLR -65 447 247 1 1641 1169 112 32 5 chr4 138493836 138494025 -17136095 + B2_Mm2 SINE B2 2 195 0 1 1641 333 325 59 46 chr4 138494025 138494047 -17136073 - MLT1J LTR MaLR -266 246 226 1 1641 201 222 0 0 chr4 138494259 138494295 -17135825 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1641 227 345 45 18 chr4 138494354 138494466 -17135654 + Arthur1A DNA Tip100 6 120 -57 1 1641 296 276 32 26 chr4 138494579 138494735 -17135385 + G-rich Low_complexity Low_complexity 5 161 0 1 1641 249 252 31 0 chr4 138494955 138495029 -17135091 - MIR SINE MIR -148 128 47 1 1641 226 288 51 126 chr4 138495857 138496073 -17134047 + MTEa LTR MaLR 107 308 -71 1 1641 918 0 63 0 chr4 138496073 138496215 -17133905 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1641 1060 98 0 0 chr4 138496217 138496360 -17133760 - B1_Mus1 SINE Alu -4 144 2 1 1641 226 248 39 67 chr4 138496360 138496422 -17133698 + MTEa LTR MaLR 309 371 -8 1 1641 883 222 19 29 chr4 138496761 138496970 -17133150 - ID_B1 SINE B4 -16 208 2 1 1641 1289 228 37 58 chr4 138497155 138497348 -17132772 - ORR1D2 LTR MaLR -1 369 177 1 1641 540 0 0 0 chr4 138497348 138497408 -17132712 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1641 1289 228 37 58 chr4 138497408 138497591 -17132529 - ORR1D2 LTR MaLR -194 176 3 1 1641 417 294 120 29 chr4 138498202 138498444 -17131676 - MamGypLTR1b LTR Gypsy -94 688 425 1 1641 396 202 22 0 chr4 138498940 138499029 -17131091 + ID_B1 SINE B4 111 201 -23 1 1641 189 0 0 0 chr4 138499507 138499528 -17130592 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1641 357 222 66 80 chr4 138499594 138499664 -17130456 - ORR1E LTR MaLR 0 419 350 1 1641 195 129 0 0 chr4 138499664 138499695 -17130425 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 1 1641 627 223 53 32 chr4 138499695 138499884 -17130236 - ORR1E LTR MaLR -70 349 15 1 1641 203 88 29 0 chr4 138500279 138500313 -17129807 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 1 1641 636 274 13 10 chr4 138500664 138500816 -17129304 + B3A SINE B2 11 158 -37 2 1641 435 68 0 0 chr4 138500816 138500875 -17129245 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1641 390 275 72 114 chr4 138500875 138500906 -17129214 + B2_Mm2 SINE B2 159 187 -8 2 1641 1253 34 0 0 chr4 138500906 138501052 -17129068 + B1_Mm SINE Alu 2 147 0 4 1641 233 0 62 0 chr4 138501063 138501095 -17129025 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 1641 732 135 50 113 chr4 138501165 138501181 -17128939 - B1_Mur2 SINE Alu 0 149 139 6 1641 294 29 0 0 chr4 138501181 138501216 -17128904 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1641 732 135 50 113 chr4 138501216 138501358 -17128762 - B1_Mur2 SINE Alu -11 138 1 6 1641 487 309 119 44 chr4 138501753 138502071 -17128049 + MER2 DNA MER2_type 1 342 -3 8 1641 465 180 0 0 chr4 138502182 138502271 -17127849 + (TG)n Simple_repeat Simple_repeat 1 89 0 9 1641 683 240 158 75 chr4 138502271 138502537 -17127583 - B4A SINE B4 0 292 5 1 1641 225 247 0 38 chr4 138502539 138502619 -17127501 - L1MC4 LINE L1 -460 7582 7506 1 1641 354 284 35 92 chr4 138502685 138502916 -17127204 - L1MC4 LINE L1 -1125 6917 6662 1 1641 642 26 0 0 chr4 138502962 138503038 -17127082 + (TCC)n Simple_repeat Simple_repeat 1 76 0 1 1641 502 336 37 13 chr4 138503151 138503450 -17126670 - L1MB7 LINE L1 -16 6168 5863 1 1641 319 256 48 0 chr4 138503572 138503697 -17126423 - L1M4 LINE L1 -3789 3217 3087 1 1641 893 264 26 88 chr4 138503747 138504054 -17126066 - B4A SINE B4 -2 290 3 1 1641 799 254 9 23 chr4 138504253 138504447 -17125673 + B3A SINE B2 1 187 -8 1 1641 1306 115 11 0 chr4 138504458 138504641 -17125479 + B2_Mm2 SINE B2 1 185 -10 1 1641 37 0 0 0 chr4 138504641 138504678 -17125442 + AT_rich Low_complexity Low_complexity 1 37 0 1 1641 214 255 0 0 chr4 138504714 138504761 -17125359 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1641 237 234 0 0 chr4 138504792 138504856 -17125264 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1641 667 166 278 0 chr4 138504857 138505026 -17125094 - B3 SINE B2 0 216 1 2 1641 240 301 27 27 chr4 138505117 138505264 -17124856 - L1M4 LINE L1 -4631 2703 2557 1 1641 771 261 54 6 chr4 138505312 138505478 -17124642 + ID_B1 SINE B4 23 196 -28 2 1641 929 311 61 65 chr4 138505488 138506011 -17124109 - L1M4 LINE L1 -5337 1567 1047 1 1641 556 289 7 62 chr4 138506053 138506197 -17123923 + RSINE1 SINE B4 17 152 -13 2 1641 309 330 0 11 chr4 138506279 138506371 -17123749 - L1M4 LINE L1 -5939 965 875 1 1641 1099 257 138 9 chr4 138506467 138506801 -17123319 - MTEa LTR MaLR 0 379 3 2 1641 249 21 19 77 chr4 138506860 138506912 -17123208 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1641 1499 217 116 13 chr4 138507264 138507642 -17122478 + MTD LTR MaLR 3 419 0 2 1641 591 335 27 27 chr4 138507856 138508077 -17122043 + MLT1J LTR MaLR 52 272 -240 2 1641 3306 28 46 0 chr4 138508099 138508492 -17121628 + IAPLTR2a LTR ERVK 1 411 0 2 1641 688 260 67 12 chr4 138508607 138508963 -17121157 + MTD LTR MaLR 9 417 -2 2 1641 308 282 126 17 chr4 138508972 138509091 -17121029 + MLT1B LTR MaLR 6 137 -253 3 1641 837 261 31 78 chr4 138509095 138509353 -17120767 - MTE2a LTR MaLR -3 376 131 3 1641 213 280 82 27 chr4 138509565 138509675 -17120445 - L2 LINE L2 -940 2479 2364 3 1641 2259 143 72 3 chr4 138509711 138510097 -17120023 + MTC LTR MaLR 1 413 -8 3 1641 252 326 70 7 chr4 138510101 138510243 -17119877 - L2 LINE L2 -1094 2325 2175 3 1641 543 216 27 9 chr4 138510428 138510540 -17119580 + B1F SINE Alu 33 146 -3 3 1641 288 0 0 0 chr4 138510541 138510573 -17119547 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1641 1222 185 24 0 chr4 138510574 138510785 -17119335 + B3 SINE B2 1 216 0 3 1641 968 341 57 4 chr4 138511071 138511601 -17118519 - L1MB3 LINE L1 -5 6178 5621 3 1641 279 0 0 0 chr4 138511981 138512012 -17118108 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1641 545 86 0 11 chr4 138512012 138512106 -17118014 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1641 591 112 0 0 chr4 138512108 138512197 -17117923 + (TGAA)n Simple_repeat Simple_repeat 3 91 0 4 1641 440 287 39 0 chr4 138512215 138512344 -17117776 - Lx8 LINE L1 -198 7275 7142 4 1641 517 282 0 0 chr4 138512356 138512487 -17117633 - Lx8 LINE L1 -379 7094 6964 4 1641 749 97 11 54 chr4 138512488 138512537 -17117583 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 1641 495 0 0 0 chr4 138512537 138512592 -17117528 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 4 1641 749 124 30 37 chr4 138512592 138512846 -17117274 + (TAGA)n Simple_repeat Simple_repeat 1 252 0 4 1641 207 0 0 0 chr4 138512846 138512869 -17117251 + (CATA)n Simple_repeat Simple_repeat 1 23 0 4 1641 739 138 6 11 chr4 138512881 138513057 -17117063 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 4 1641 314 62 42 0 chr4 138513090 138513138 -17116982 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 4 1641 1254 296 41 57 chr4 138513153 138513666 -17116454 - Lx8 LINE L1 -504 6969 6465 4 1641 291 158 0 34 chr4 138513676 138513735 -17116385 + B4 SINE B4 167 223 -69 4 1641 1233 329 61 24 chr4 138513739 138514505 -17115615 + Lx9 LINE L1 6675 7480 -164 4 1641 330 167 0 0 chr4 138514525 138514585 -17115535 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1641 1452 226 114 0 chr4 138514586 138514962 -17115158 - MTD LTR MaLR 0 419 1 5 1641 267 272 91 25 chr4 138515185 138515318 -17114802 + MIRb SINE MIR 59 205 -63 5 1641 293 182 58 115 chr4 138515508 138515595 -17114525 + MT2B LTR ERVL 156 237 -364 5 1641 645 164 0 26 chr4 138515522 138515635 -17114485 + PB1D9 SINE Alu 10 119 -1 5 1641 272 275 130 52 chr4 138515656 138515771 -17114349 - MIRb SINE MIR -125 143 20 5 1641 1106 118 0 11 chr4 138516213 138516393 -17113727 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1641 210 139 0 27 chr4 138516568 138516605 -17113515 - L4 LINE RTE -211 1818 1783 5 1641 217 206 175 0 chr4 138516741 138516804 -17113316 + B1F1 SINE Alu 22 95 -54 5 1641 360 203 8 33 chr4 138516822 138516944 -17113176 + GA-rich Low_complexity Low_complexity 5 123 0 5 1641 198 167 0 0 chr4 138516961 138516997 -17113123 + GA-rich Low_complexity Low_complexity 5 40 0 5 1641 228 217 22 0 chr4 138517009 138517055 -17113065 + GA-rich Low_complexity Low_complexity 2 48 0 5 1641 1153 101 0 0 chr4 138517079 138517227 -17112893 + B1_Mus1 SINE Alu 1 148 0 6 1641 1305 88 0 42 chr4 138517248 138517437 -17112683 + B2_Mm2 SINE B2 1 181 -14 6 1641 939 187 117 18 chr4 138517455 138517665 -17112455 + B3 SINE B2 2 211 -5 6 1641 253 161 304 0 chr4 138517672 138517728 -17112392 + ID4 SINE ID 1 73 -10 6 1641 287 236 112 0 chr4 138518735 138518824 -17111296 + PB1D10 SINE Alu 18 116 -1 6 1641 282 106 0 0 chr4 138518894 138518941 -17111179 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1641 192 77 0 0 chr4 138518986 138519012 -17111108 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1641 576 209 0 134 chr4 138519013 138519162 -17110958 - B1F SINE Alu -12 137 9 6 1641 469 351 67 64 chr4 138519398 138519681 -17110439 - B4A SINE B4 -8 284 1 6 1641 909 211 58 49 chr4 138519689 138519900 -17110220 - ID_B1 SINE B4 -8 216 7 6 1641 41 0 0 0 chr4 138519949 138519990 -17110130 + AT_rich Low_complexity Low_complexity 1 41 0 7 1641 572 317 139 64 chr4 138520322 138520488 -17109632 - MLT1K LTR MaLR -56 539 341 7 1641 2936 35 9 6 chr4 138520488 138520833 -17109287 - ORR1A1 LTR MaLR 0 346 1 7 1641 572 317 139 64 chr4 138520833 138520903 -17109217 - MLT1K LTR MaLR -255 340 279 7 1641 468 0 0 0 chr4 138520903 138520955 -17109165 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1641 572 317 139 64 chr4 138520955 138521047 -17109073 - MLT1K LTR MaLR -317 278 186 7 1641 198 26 50 25 chr4 138521534 138521574 -17108546 + (TTG)n Simple_repeat Simple_repeat 3 43 0 7 1641 180 0 0 0 chr4 138521601 138521621 -17108499 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1641 21 0 0 0 chr4 138521621 138521642 -17108478 + AT_rich Low_complexity Low_complexity 1 21 0 7 1641 913 54 0 0 chr4 138521667 138521778 -17108342 - B2_Mm2 SINE B2 -84 111 1 7 1641 342 298 68 68 chr4 138522550 138522712 -17107408 + RSINE1 SINE B4 4 165 0 7 1641 180 111 0 0 chr4 138522784 138522811 -17107309 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1641 261 0 0 0 chr4 138524665 138524694 -17105426 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1641 321 47 0 0 chr4 138524694 138524736 -17105384 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1641 302 286 0 0 chr4 138525478 138525541 -17104579 + ID4_ SINE ID 3 65 -18 8 1641 296 303 39 39 chr4 138526022 138526125 -17103995 - MIR SINE MIR -61 147 45 8 1641 363 298 0 0 chr4 138526728 138526812 -17103308 + B4A SINE B4 186 269 -23 8 1641 284 327 27 9 chr4 138526923 138527034 -17103086 + MER113 DNA MER1_type 7 119 -402 8 1641 388 261 39 36 chr4 138527169 138527322 -17102798 - B1F SINE Alu -1 148 1 8 1641 334 329 100 87 chr4 138527443 138527743 -17102377 - L1MD3 LINE L1 -40 7955 7652 8 1641 232 290 58 0 chr4 138527830 138527899 -17102221 - MT2A LTR ERVL -114 419 347 8 1641 247 175 0 0 chr4 138528595 138528635 -17101485 + L2b LINE L2 3330 3369 -6 8 1641 311 172 86 0 chr4 138529875 138529933 -17100187 - L2a LINE L2 -17 3409 3347 9 1641 286 227 167 38 chr4 138530115 138530233 -17099887 + MIRc SINE MIR 30 157 -51 9 1641 231 299 15 127 chr4 138530282 138530416 -17099704 + MT2B LTR ERVL 139 257 -344 9 1641 532 218 100 46 chr4 138530323 138530453 -17099667 + B1_Mur4 SINE Alu 6 142 -8 9 1641 648 0 0 0 chr4 138530454 138530526 -17099594 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 9 1641 853 97 57 0 chr4 138530539 138530663 -17099457 + B1_Mur4 SINE Alu 20 150 0 9 1641 904 189 130 5 chr4 138530666 138530858 -17099262 + B3 SINE B2 1 216 0 9 1641 887 0 0 10 chr4 138530966 138531070 -17099050 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 9 1641 725 71 81 0 chr4 138531070 138531169 -17098951 - B1_Mur4 SINE Alu -9 141 35 9 1641 262 149 194 65 chr4 138531096 138531189 -17098931 - MT2B LTR ERVL -337 264 160 9 1641 609 215 166 17 chr4 138531709 138531884 -17098236 - ID_B1 SINE B4 -7 217 17 1 1641 1134 20 13 13 chr4 138532499 138532649 -17097471 + (TCCA)n Simple_repeat Simple_repeat 4 153 0 1 1641 504 0 0 0 chr4 138532869 138532925 -17097195 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1641 257 309 157 7 chr4 138533165 138533305 -17096815 + MIR SINE MIR 22 182 -80 1 1641 270 73 0 0 chr4 138534107 138534148 -17095972 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1641 822 154 276 6 chr4 138534217 138534387 -17095733 - B3 SINE B2 0 216 1 1 1641 249 151 0 0 chr4 138534597 138534650 -17095470 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1641 489 277 25 8 chr4 138535816 138535936 -17094184 + RSINE1 SINE B4 3 124 -41 1 1641 237 108 0 0 chr4 138535936 138535973 -17094147 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1641 893 221 25 50 chr4 138536158 138536358 -17093762 + B3A SINE B2 2 196 -2 1 1641 540 231 0 0 chr4 138536378 138536508 -17093612 + (TA)n Simple_repeat Simple_repeat 1 130 0 1 1641 393 330 84 28 chr4 138536508 138536686 -17093434 - MER63A DNA AcHobo -11 199 12 1 1641 262 256 129 72 chr4 138536799 138536938 -17093182 - ORR1E LTR MaLR -162 197 51 1 1641 2808 119 24 14 chr4 138537441 138537858 -17092262 + MTC LTR MaLR 1 421 0 1 1641 3771 168 66 22 chr4 138537859 138538588 -17091532 + MTC-int LTR MaLR 2 762 -496 1 1641 321 278 207 12 chr4 138538617 138538781 -17091339 + L1MC LINE L1 4692 4887 -1259 1 1641 467 176 0 0 chr4 138538809 138538883 -17091237 + B1_Mur1 SINE Alu 40 113 -36 1 1641 336 298 53 11 chr4 138538883 138538901 -17091219 + B4 SINE B4 125 220 -72 1 1641 482 43 14 0 chr4 138538948 138539017 -17091103 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1641 267 286 51 78 chr4 138540114 138540287 -17089833 + L2b LINE L2 2940 3113 -274 1 1641 642 26 0 0 chr4 138540481 138540557 -17089563 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1641 555 237 135 65 chr4 138540777 138540962 -17089158 - B3A SINE B2 0 198 1 1 1641 219 36 0 0 chr4 138541208 138541236 -17088884 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1641 1003 191 91 49 chr4 138541251 138541516 -17088604 - RLTR11A LTR ERVK -39 489 214 1 1641 1369 170 25 18 chr4 138541491 138541767 -17088353 - BGLII_B LTR ERVK -163 278 1 1 1641 230 330 148 38 chr4 138541775 138542065 -17088055 - L2c LINE L2 -147 3240 2919 1 1641 1127 92 208 36 chr4 138542088 138542280 -17087840 + URR1A DNA MER1_type 1 225 -1 1 1641 318 245 31 32 chr4 138542723 138542829 -17087291 + MIR3 SINE MIR 60 156 -52 1 1641 277 348 105 24 chr4 138542836 138543045 -17087075 + MIRc SINE MIR 10 235 -33 1 1642 525 32 0 0 chr4 138543210 138543273 -17086847 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1642 234 279 114 23 chr4 138543332 138543464 -17086656 + MIRm SINE MIR 12 155 -121 1 1642 637 265 85 5 chr4 138543522 138543723 -17086397 - ID_B1 SINE B4 -6 218 2 1 1642 604 213 116 16 chr4 138543810 138543939 -17086181 - B1_Mur1 SINE Alu 0 149 8 1 1642 593 43 0 41 chr4 138544106 138544203 -17085917 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1 1642 894 135 49 21 chr4 138544223 138544367 -17085753 - B1_Mur3 SINE Alu 0 149 2 1 1642 466 162 42 9 chr4 138544627 138544742 -17085378 - L1ME3 LINE L1 -34 6130 6010 1 1642 467 318 124 33 chr4 138545535 138545776 -17084344 - MER2 DNA MER2_type -8 337 75 1 1642 486 0 0 0 chr4 138545798 138545852 -17084268 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1642 615 296 0 29 chr4 138545861 138546035 -17084085 - B4A SINE B4 -6 286 118 1 1642 445 169 39 0 chr4 138546035 138546112 -17084008 - B1_Mur2 SINE Alu -65 84 5 1 1642 271 270 54 33 chr4 138546037 138546129 -17083991 - B4A SINE B4 -125 167 74 1 1642 619 237 52 0 chr4 138546127 138546262 -17083858 + ID_B1 SINE B4 78 219 -5 1 1642 255 325 107 8 chr4 138546251 138546372 -17083748 - B1F1 SINE Alu -8 141 9 1 1642 247 302 16 0 chr4 138546318 138546381 -17083739 - B4A SINE B4 -144 148 85 1 1642 204 333 44 73 chr4 138546821 138546957 -17083163 - L2b LINE L2 -14 3361 3230 1 1642 216 283 0 0 chr4 138546952 138547005 -17083115 - L2a LINE L2 0 3426 3374 1 1642 254 272 6 58 chr4 138547815 138547864 -17082256 + MIRb SINE MIR 61 226 -42 1 1642 257 250 163 23 chr4 138547864 138547950 -17082170 + L2b LINE L2 3256 3353 -22 1 1642 1210 194 135 15 chr4 138548029 138548363 -17081757 - ORR1D1 LTR MaLR 0 374 1 1 1642 203 178 0 22 chr4 138548964 138549010 -17081110 + GA-rich Low_complexity Low_complexity 4 48 0 1 1642 477 217 0 21 chr4 138549085 138549179 -17080941 + PB1D10 SINE Alu 26 117 0 1 1642 548 289 153 10 chr4 138549201 138549397 -17080723 - MER58A DNA MER1_type 0 224 1 1 1642 1214 275 66 36 chr4 138549914 138550306 -17079814 + MTD LTR MaLR 1 404 -15 1 1642 428 270 43 28 chr4 138550377 138550518 -17079602 - MIR SINE MIR -59 203 61 1 1642 198 315 197 27 chr4 138550774 138550921 -17079199 - MIR SINE MIR -10 252 81 1 1642 244 372 120 30 chr4 138551155 138551454 -17078666 + LTR16A LTR ERVL 88 413 -38 1 1642 613 223 35 50 chr4 138552481 138552644 -17077476 + B3 SINE B2 58 216 0 1 1642 362 264 54 20 chr4 138553167 138553317 -17076803 + B3 SINE B2 4 210 -6 1 1642 232 246 0 34 chr4 138553324 138553442 -17076678 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1642 626 224 40 8 chr4 138553482 138553608 -17076512 - MIR SINE MIR -112 150 21 1 1642 223 191 21 0 chr4 138553647 138553694 -17076426 + MIRc SINE MIR 84 131 -137 1 1642 874 272 94 4 chr4 138554549 138554793 -17075327 - MTEa LTR MaLR -34 345 80 1 1642 2037 276 205 18 chr4 138554843 138555471 -17074649 - MTE-int LTR MaLR -4 1576 869 1 1642 2508 129 82 5 chr4 138555471 138555862 -17074258 - MTC LTR MaLR 0 421 1 1 1642 2037 250 152 11 chr4 138555862 138556110 -17074010 - MTE-int LTR MaLR -712 868 582 1 1642 296 151 151 0 chr4 138556279 138556332 -17073788 + U1 snRNA snRNA 104 164 -1 1 1642 832 158 209 28 chr4 138556374 138556556 -17073564 + B3 SINE B2 2 216 0 1 1642 351 0 0 0 chr4 138556600 138556639 -17073481 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1642 1796 197 67 0 chr4 138556639 138557045 -17073075 - RMER10A LTR ERVL -9 433 1 1 1642 550 295 8 162 chr4 138557045 138557292 -17072828 - MTEa LTR MaLR -70 309 101 1 1642 575 286 137 27 chr4 138557762 138558024 -17072096 - B4 SINE B4 0 292 2 1 1642 370 283 92 23 chr4 138558031 138558161 -17071959 - MLT1A1 LTR MaLR -2 406 268 1 1642 235 238 100 82 chr4 138558260 138558370 -17071750 - MLT1A1 LTR MaLR -295 113 2 1 1642 1134 61 0 0 chr4 138558985 138559132 -17070988 + (TGGA)n Simple_repeat Simple_repeat 1 147 0 1 1642 361 308 88 7 chr4 138559531 138559677 -17070443 - MER20 DNA MER1_type -7 212 55 1 1642 883 283 121 0 chr4 138559677 138559917 -17070203 + B4A SINE B4 2 270 -22 1 1642 184 309 49 12 chr4 138560079 138560161 -17069959 - MIR SINE MIR -90 172 88 1 1642 209 397 11 79 chr4 138560594 138560783 -17069337 - MIRb SINE MIR -21 247 72 1 1642 576 0 0 0 chr4 138561131 138561195 -17068925 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1642 300 280 17 70 chr4 138561380 138561495 -17068625 + PB1D7 SINE Alu 12 120 0 1 1642 239 209 0 0 chr4 138561611 138561654 -17068466 + ID4 SINE ID 24 66 -17 1 1642 405 0 0 0 chr4 138561671 138561716 -17068404 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1642 539 264 16 0 chr4 138561998 138562123 -17067997 - RSINE1 SINE B4 -27 138 12 1 1642 222 195 0 0 chr4 138562415 138562456 -17067664 - B1F2 SINE Alu -82 67 27 1 1642 608 194 26 103 chr4 138562420 138562575 -17067545 - ID_B1 SINE B4 -81 143 1 1 1642 289 325 104 36 chr4 138563207 138563485 -17066635 - L2 LINE L2 -458 2961 2665 1 1642 1314 153 42 5 chr4 138563596 138563813 -17066307 - URR1B DNA MER1_type 0 225 1 1 1642 414 0 0 0 chr4 138564648 138564694 -17065426 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1642 311 297 40 33 chr4 138564951 138565101 -17065019 + MLT1D LTR MaLR 59 209 -296 1 1642 983 128 88 6 chr4 138565104 138565288 -17064832 + B2_Mm2 SINE B2 1 214 -2 1 1642 361 139 0 37 chr4 138565293 138565375 -17064745 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 1 1642 390 200 59 0 chr4 138565485 138565570 -17064550 + B1F SINE Alu 47 136 -13 1 1642 600 303 96 40 chr4 138565643 138565894 -17064226 + B4A SINE B4 28 292 0 1 1642 335 164 49 0 chr4 138566041 138566102 -17064018 + B1_Mur4 SINE Alu 1 64 -86 1 1642 217 253 89 33 chr4 138566646 138566736 -17063384 + MIR SINE MIR 58 152 -56 1 1642 1072 251 18 47 chr4 138567029 138567344 -17062776 + B4 SINE B4 6 291 -1 1 1642 861 135 0 8 chr4 138568057 138568191 -17061929 - B1_Mur3 SINE Alu -5 144 12 1 1642 639 253 231 0 chr4 138568222 138568443 -17061677 + B4A SINE B4 1 272 -20 1 1642 261 0 0 0 chr4 138568448 138568477 -17061643 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1642 367 262 8 84 chr4 138568707 138568868 -17061252 + MIR SINE MIR 42 182 -80 1 1642 306 365 29 0 chr4 138569233 138569370 -17060750 + MIR SINE MIR 107 247 -15 1 1642 763 165 52 8 chr4 138569625 138569759 -17060361 - B1_Mur2 SINE Alu -9 140 1 1 1642 366 293 17 25 chr4 138569900 138570019 -17060101 - B4A SINE B4 -22 270 153 1 1642 240 229 0 54 chr4 138570683 138570757 -17059363 + (CATA)n Simple_repeat Simple_repeat 1 70 0 1 1642 645 193 161 1 chr4 138570828 138570990 -17059130 + B3 SINE B2 2 188 -28 2 1642 303 28 0 0 chr4 138570990 138571026 -17059094 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1642 433 218 97 108 chr4 138571026 138571058 -17059062 + B2_Mm2 SINE B2 165 194 -1 2 1642 482 0 17 0 chr4 138571141 138571199 -17058921 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1642 518 100 4 86 chr4 138571449 138571554 -17058566 - B1_Mur1 SINE Alu 0 149 50 2 1642 895 289 32 32 chr4 138571727 138571803 -17058317 + B4A SINE B4 1 83 -209 2 1642 243 0 0 0 chr4 138571803 138571830 -17058290 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1642 895 289 32 32 chr4 138571830 138572032 -17058088 + B4A SINE B4 84 278 -14 2 1642 200 111 28 0 chr4 138572527 138572563 -17057557 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1642 553 339 51 13 chr4 138572658 138572894 -17057226 - MLT1I LTR MaLR -20 391 147 2 1642 324 309 54 31 chr4 138573073 138573108 -17057012 - ID_B1 SINE B4 -8 216 182 2 1642 827 20 10 0 chr4 138573108 138573209 -17056911 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 1642 324 309 54 31 chr4 138573209 138573303 -17056817 - ID_B1 SINE B4 -43 181 86 2 1642 272 281 178 19 chr4 138573323 138573537 -17056583 + MER2 DNA MER2_type 72 319 -26 2 1642 453 300 16 8 chr4 138573942 138574063 -17056057 + RSINE1 SINE B4 3 124 -41 2 1642 486 0 0 0 chr4 138574063 138574117 -17056003 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1642 207 0 0 0 chr4 138574278 138574301 -17055819 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1642 583 159 56 9 chr4 138574354 138574462 -17055658 - B1_Mur3 SINE Alu -36 113 1 2 1642 762 224 25 0 chr4 138574773 138574934 -17055186 + ID_B1 SINE B4 53 217 -7 2 1642 354 123 0 0 chr4 138575223 138575280 -17054840 + (TTA)n Simple_repeat Simple_repeat 3 59 0 2 1642 625 232 14 21 chr4 138575709 138575850 -17054270 + ID_B1 SINE B4 85 224 0 2 1642 276 353 52 7 chr4 138575728 138575882 -17054238 - YREP_Mm Unknown Unknown -1518 294 134 2 1642 1173 117 0 0 chr4 138577094 138577413 -17052707 + (TCCA)n Simple_repeat Simple_repeat 1 319 0 2 1642 21 57 0 0 chr4 138577994 138578029 -17052091 + AT_rich Low_complexity Low_complexity 1 35 0 2 1642 370 282 29 0 chr4 138578069 138578172 -17051948 - B1F SINE Alu -2 147 42 2 1642 300 252 230 29 chr4 138578230 138578369 -17051751 - MLT1D LTR MaLR 0 549 383 2 1642 866 98 103 29 chr4 138579382 138579518 -17050602 + B1_Mus2 SINE Alu 2 147 0 2 1642 619 270 6 35 chr4 138579531 138579700 -17050420 + B4 SINE B4 83 246 -46 2 1642 645 88 0 0 chr4 138579705 138579807 -17050313 + (TC)n Simple_repeat Simple_repeat 1 102 0 2 1642 530 201 0 39 chr4 138579836 138580017 -17050103 + (CATA)n Simple_repeat Simple_repeat 4 177 0 2 1642 278 286 13 0 chr4 138580020 138580097 -17050023 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1642 517 302 82 0 chr4 138580342 138580518 -17049602 - MLT1J LTR MaLR -335 177 3 2 1642 339 276 57 57 chr4 138580765 138580976 -17049144 - MLT1D LTR MaLR -114 391 181 2 1642 246 299 145 56 chr4 138583718 138583873 -17046247 - MLT1D LTR MaLR -206 299 119 2 1642 464 212 117 36 chr4 138583873 138584010 -17046110 - B1F SINE Alu -1 148 1 2 1642 246 299 145 56 chr4 138584010 138584118 -17046002 - MLT1D LTR MaLR -387 118 12 2 1642 465 182 34 16 chr4 138584118 138584245 -17045875 - ORR1D1 LTR MaLR 0 374 202 2 1642 3319 148 70 29 chr4 138584655 138585272 -17044848 + RLTR26 LTR ERVK 1 642 0 2 1642 254 307 134 51 chr4 138586384 138586638 -17043482 - MLT1C LTR MaLR -187 280 6 2 1642 267 31 0 0 chr4 138587801 138587833 -17042287 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 2 1642 886 149 118 44 chr4 138588833 138589037 -17041083 - URR1A DNA MER1_type -7 219 1 2 1642 361 296 81 12 chr4 138589301 138589462 -17040658 + MIR SINE MIR 60 231 -31 2 1642 231 335 80 32 chr4 138590503 138590691 -17039429 - MIR SINE MIR -42 220 24 2 1642 350 319 118 0 chr4 138590805 138590924 -17039196 + RSINE1 SINE B4 1 133 -32 2 1642 225 306 63 63 chr4 138592119 138592201 -17037919 + MIRc SINE MIR 34 115 -153 2 1642 1826 176 87 8 chr4 138592201 138592557 -17037563 - ORR1C2 LTR MaLR 0 384 1 2 1642 225 306 63 63 chr4 138592557 138592617 -17037503 + MIRc SINE MIR 116 176 -92 2 1642 381 248 192 75 chr4 138593101 138593315 -17036805 + B4 SINE B4 3 241 -51 2 1642 324 48 0 0 chr4 138593319 138593361 -17036759 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1642 248 281 171 0 chr4 138593499 138593581 -17036539 - L2a LINE L2 -20 3406 3311 2 1642 240 326 99 85 chr4 138594613 138594814 -17035306 + MIRc SINE MIR 22 225 -43 2 1642 782 249 70 0 chr4 138595266 138595467 -17034653 - MTD LTR MaLR -8 411 197 2 1642 551 226 64 28 chr4 138595463 138595604 -17034516 - B1_Mur3 SINE Alu 0 149 4 2 1642 885 201 72 31 chr4 138595604 138595794 -17034326 - MTD LTR MaLR -201 218 21 2 1642 323 169 0 14 chr4 138596578 138596650 -17033470 + CT-rich Low_complexity Low_complexity 1 71 0 2 1642 1009 126 78 16 chr4 138596919 138597112 -17033008 - URR1B DNA MER1_type 0 225 21 2 1642 308 314 9 28 chr4 138597370 138597478 -17032642 - MTEa LTR MaLR -13 366 261 2 1642 453 193 0 150 chr4 138597819 138597942 -17032178 + PB1 SINE Alu 15 118 -2 2 1642 1045 126 7 0 chr4 138597946 138598089 -17032031 + B1_Mur1 SINE Alu 1 144 -5 2 1642 207 163 0 44 chr4 138598089 138598134 -17031986 + A-rich Low_complexity Low_complexity 3 45 0 2 1642 309 279 25 0 chr4 138598150 138598229 -17031891 + ID2 SINE ID 1 81 -2 2 1642 193 196 18 18 chr4 138598239 138598267 -17031853 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 2 1642 1305 83 0 0 chr4 138598267 138598447 -17031673 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1642 193 196 18 18 chr4 138598447 138598475 -17031645 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 2 1642 427 259 93 0 chr4 138598492 138598600 -17031520 + B1F SINE Alu 26 143 -6 2 1642 227 300 117 9 chr4 138598720 138598831 -17031289 + L1MEd LINE L1 40 162 -5957 2 1642 534 211 35 0 chr4 138599023 138599137 -17030983 + B1_Mur3 SINE Alu 11 128 -21 2 1642 463 263 17 17 chr4 138599166 138599282 -17030838 + PB1D10 SINE Alu 2 117 0 2 1642 853 178 0 0 chr4 138599338 138599484 -17030636 + B1_Mus1 SINE Alu 2 147 -1 2 1642 639 0 0 0 chr4 138599484 138599555 -17030565 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 2 1642 349 248 220 0 chr4 138600053 138600162 -17029958 + ID_B1 SINE B4 89 221 -3 2 1642 1228 164 0 5 chr4 138600243 138600458 -17029662 - ORR1D1-int LTR MaLR -1123 247 34 2 1642 1310 182 16 176 chr4 138600454 138600880 -17029240 - ORR1D1 LTR MaLR -16 358 1 2 1642 331 267 27 0 chr4 138600900 138600975 -17029145 + ID4_ SINE ID 3 79 -4 2 1642 571 207 8 49 chr4 138601443 138601565 -17028555 + PB1D10 SINE Alu 1 117 0 2 1642 770 299 76 11 chr4 138601586 138601850 -17028270 + B4A SINE B4 2 282 -10 2 1642 723 165 0 9 chr4 138601911 138602027 -17028093 + PB1D9 SINE Alu 1 115 -5 2 1642 661 261 9 97 chr4 138602036 138602252 -17027868 + B3A SINE B2 1 197 -1 2 1642 774 274 32 0 chr4 138603477 138603667 -17026453 - B3A SINE B2 -1 197 2 2 1642 873 264 51 0 chr4 138603694 138603891 -17026229 + ID_B1 SINE B4 1 207 -17 2 1642 843 233 45 30 chr4 138603893 138603947 -17026173 - ID_B1 SINE B4 -20 204 155 2 1642 1829 164 122 6 chr4 138603947 138604148 -17025972 - ORR1C2 LTR MaLR 0 384 171 2 1642 294 98 0 0 chr4 138604148 138604199 -17025921 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 1642 1829 164 122 6 chr4 138604199 138604341 -17025779 - ORR1C2 LTR MaLR -214 170 2 2 1642 843 233 45 30 chr4 138604341 138604485 -17025635 - ID_B1 SINE B4 -70 154 3 2 1642 286 164 164 0 chr4 138604784 138604851 -17025269 - ID4 SINE ID -4 79 2 2 1642 359 220 28 7 chr4 138605000 138605142 -17024978 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 2 1642 500 204 197 0 chr4 138605176 138605308 -17024812 - RSINE1 SINE B4 -5 160 3 2 1642 1458 58 26 11 chr4 138605915 138606075 -17024045 + B2_Mm1t SINE B2 1 160 -33 2 1642 252 86 0 0 chr4 138606075 138606110 -17024010 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1642 1458 58 26 11 chr4 138606110 138606139 -17023981 + B2_Mm1t SINE B2 161 193 0 2 1642 272 288 35 35 chr4 138606163 138606278 -17023842 + MIR3 SINE MIR 40 154 -54 2 1642 1410 155 14 0 chr4 138606413 138606626 -17023494 - B3 SINE B2 0 216 1 2 1642 355 271 67 3 chr4 138606996 138607135 -17022985 - MIRb SINE MIR -76 186 38 2 1642 1166 75 0 0 chr4 138607183 138607329 -17022791 - B1_Mus2 SINE Alu -1 146 1 2 1642 783 166 20 33 chr4 138607463 138607613 -17022507 + B1_Mur4 SINE Alu 3 150 0 2 1642 717 12 0 0 chr4 138607617 138607699 -17022421 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2 1642 253 231 0 15 chr4 138608248 138608314 -17021806 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1642 591 278 103 27 chr4 138609280 138609465 -17020655 - ID_B1 SINE B4 -1 223 25 2 1642 336 296 12 0 chr4 138609650 138609731 -17020389 + PB1D10 SINE Alu 13 94 -23 2 1642 293 280 136 0 chr4 138610060 138610178 -17019942 - MIRb SINE MIR -78 190 57 2 1642 232 289 51 26 chr4 138611125 138611203 -17018917 - ORR1E LTR MaLR -36 343 264 2 1642 346 319 132 6 chr4 138611236 138611403 -17018717 - ORR1E LTR MaLR -169 190 3 2 1642 328 196 0 0 chr4 138612262 138612318 -17017802 + MLT1J LTR MaLR 247 302 -210 2 1642 981 203 93 15 chr4 138612500 138612700 -17017420 + B4A SINE B4 14 229 -63 2 1642 925 139 17 46 chr4 138612700 138612873 -17017247 + B2_Mm2 SINE B2 1 168 -27 2 1642 193 163 20 20 chr4 138612873 138612923 -17017197 + GA-rich Low_complexity Low_complexity 2 51 0 2 1642 531 128 0 0 chr4 138612927 138613013 -17017107 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1642 258 194 113 56 chr4 138613013 138613084 -17017036 + B4A SINE B4 217 291 -1 2 1642 489 110 0 0 chr4 138613086 138613159 -17016961 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1642 201 367 67 0 chr4 138615100 138615233 -17014887 - MIRm SINE MIR -111 165 23 2 1642 238 160 40 0 chr4 138616221 138616271 -17013849 + ID4 SINE ID 1 52 -31 2 1642 939 227 62 10 chr4 138616295 138616504 -17013616 + ID_B1 SINE B4 5 224 0 2 1642 335 127 16 0 chr4 138616504 138616567 -17013553 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 3 1642 189 0 0 0 chr4 138617965 138617986 -17012134 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1642 597 295 114 0 chr4 138618621 138618814 -17011306 + ID_B1 SINE B4 10 224 0 3 1642 679 185 0 0 chr4 138618832 138618951 -17011169 + B1_Mur3 SINE Alu 30 148 -1 3 1642 1096 117 21 7 chr4 138618976 138619273 -17010847 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 3 1642 671 290 6 12 chr4 138619830 138619994 -17010126 - ID_B1 SINE B4 -58 166 4 3 1642 407 218 139 0 chr4 138620063 138620164 -17009956 - PB1D7 SINE Alu -5 115 1 3 1642 969 131 17 0 chr4 138620686 138620862 -17009258 + (GA)n Simple_repeat Simple_repeat 1 179 0 3 1642 774 222 7 14 chr4 138621150 138621296 -17008824 + B1_Mur2 SINE Alu 1 145 -4 3 1642 319 279 0 0 chr4 138621316 138621395 -17008725 + RSINE1 SINE B4 87 165 0 3 1642 22 0 0 0 chr4 138621406 138621428 -17008692 + AT_rich Low_complexity Low_complexity 1 22 0 3 1642 1087 212 42 0 chr4 138621445 138621657 -17008463 + ID_B1 SINE B4 1 221 -3 3 1642 352 141 0 15 chr4 138621674 138621739 -17008381 + RLTR15 LTR ERVK 3 66 -293 3 1642 261 0 0 0 chr4 138621770 138621799 -17008321 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 3 1642 882 168 92 0 chr4 138621813 138621986 -17008134 + B3 SINE B2 17 205 -11 3 1642 799 236 24 33 chr4 138622380 138622590 -17007530 + B3 SINE B2 8 215 -1 3 1642 1180 189 10 5 chr4 138622590 138622797 -17007323 + B3 SINE B2 1 208 -8 3 1642 32 57 0 0 chr4 138622798 138622851 -17007269 + AT_rich Low_complexity Low_complexity 1 53 0 3 1642 219 318 127 0 chr4 138622890 138623000 -17007120 + MIR SINE MIR 16 139 -123 3 1642 745 112 17 0 chr4 138623019 138623135 -17006985 + B1_Mus1 SINE Alu 19 136 -12 3 1642 298 241 74 107 chr4 138623028 138623149 -17006971 + B4 SINE B4 112 228 -64 3 1642 246 212 71 57 chr4 138623490 138623560 -17006560 - MIRc SINE MIR -141 127 57 3 1642 312 312 0 59 chr4 138623722 138623858 -17006262 + G-rich Low_complexity Low_complexity 2 129 0 3 1642 576 77 0 0 chr4 138623959 138624037 -17006083 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 3 1642 382 299 16 16 chr4 138624051 138624180 -17005940 - B1F SINE Alu -15 134 6 3 1642 909 151 0 58 chr4 138624635 138624790 -17005330 - B1_Mur1 SINE Alu -1 148 3 3 1642 759 227 36 56 chr4 138624970 138625166 -17004954 + B3A SINE B2 2 193 -5 3 1642 616 196 19 0 chr4 138625190 138625297 -17004823 + PB1D9 SINE Alu 2 110 -10 3 1642 323 305 66 48 chr4 138625641 138625933 -17004187 - L2a LINE L2 -187 3188 2885 3 1642 420 300 184 20 chr4 138625941 138626186 -17003934 - L2a LINE L2 -680 2739 2455 3 1642 191 309 107 0 chr4 138626402 138626486 -17003634 + MIRc SINE MIR 106 198 -70 3 1642 279 286 211 0 chr4 138626742 138626855 -17003265 + RSINE1 SINE B4 1 136 -29 3 1642 480 35 0 0 chr4 138626855 138626913 -17003207 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1642 279 286 211 0 chr4 138626913 138626932 -17003188 + RSINE1 SINE B4 137 160 -5 3 1642 943 129 22 0 chr4 138626972 138627111 -17003009 + B1_Mur4 SINE Alu 1 142 -8 3 1642 185 79 0 73 chr4 138627121 138627162 -17002958 + (TAA)n Simple_repeat Simple_repeat 2 39 0 3 1642 686 236 20 14 chr4 138627659 138627805 -17002315 - RSINE1 SINE B4 -17 148 2 3 1642 264 170 0 0 chr4 138627820 138627873 -17002247 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1642 329 331 50 94 chr4 138627878 138627973 -17002147 - B3A SINE B2 -16 182 11 3 1642 340 238 12 12 chr4 138627973 138628058 -17002062 - B4A SINE B4 -197 95 11 3 1642 825 152 0 27 chr4 138628333 138628482 -17001638 + B1_Mur4 SINE Alu 6 150 0 3 1642 185 162 27 0 chr4 138629161 138629198 -17000922 - L2a LINE L2 -353 3073 3036 3 1642 537 316 0 7 chr4 138629198 138629338 -17000782 + ID_B1 SINE B4 81 219 -5 3 1642 27 81 0 0 chr4 138631278 138631340 -16998780 + GC_rich Low_complexity Low_complexity 1 62 0 3 1642 23 33 0 0 chr4 138631516 138631546 -16998574 + GC_rich Low_complexity Low_complexity 1 30 0 3 1642 276 294 11 23 chr4 138631789 138631876 -16998244 + MIRb SINE MIR 86 171 -97 3 1642 207 338 99 36 chr4 138632053 138632274 -16997846 - L2a LINE L2 -14 3412 3178 3 1642 184 186 23 0 chr4 138632455 138632498 -16997622 - MIRc SINE MIR -141 127 84 3 1642 1062 123 0 0 chr4 138633061 138633232 -16996888 + (TTC)n Simple_repeat Simple_repeat 3 173 0 3 1642 1154 131 114 0 chr4 138633235 138633411 -16996709 - B3 SINE B2 -19 197 2 3 1642 760 114 22 22 chr4 138633453 138633633 -16996487 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1642 488 154 28 28 chr4 138633667 138633847 -16996273 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1642 408 219 88 82 chr4 138633895 138634054 -16996066 - RSINE1 SINE B4 0 165 6 3 1642 440 268 27 0 chr4 138634097 138634209 -16995911 - PB1D10 SINE Alu -2 115 1 3 1642 772 182 79 128 chr4 138634331 138634558 -16995562 - B3 SINE B2 0 216 1 3 1642 317 242 0 161 chr4 138634648 138634766 -16995354 + MT2B LTR ERVL 153 251 -350 3 1642 557 175 164 16 chr4 138634664 138634792 -16995328 + B1_Mus2 SINE Alu 1 147 0 3 1642 750 157 150 78 chr4 138635260 138635440 -16994680 - B3 SINE B2 -1 194 2 3 1642 898 140 18 0 chr4 138635958 138636122 -16993998 + (CATA)n Simple_repeat Simple_repeat 1 167 0 3 1642 318 340 19 0 chr4 138636189 138636295 -16993825 + PB1D10 SINE Alu 10 117 0 3 1642 225 284 29 15 chr4 138636300 138636368 -16993752 + BC1_Mm scRNA scRNA 13 81 -71 3 1642 525 263 32 1 chr4 138636308 138636366 -16993754 + ID_B1 SINE B4 22 94 -198 3 1642 277 309 85 0 chr4 138636366 138636460 -16993660 + PB1D10 SINE Alu 1 102 -15 3 1642 441 0 0 0 chr4 138636460 138636509 -16993611 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1642 451 267 92 85 chr4 138636521 138636685 -16993435 + RSINE1 SINE B4 1 165 0 3 1642 416 275 73 32 chr4 138636685 138636809 -16993311 + B4 SINE B4 86 214 -78 3 1642 1151 76 0 7 chr4 138636811 138636956 -16993164 + B1_Mm SINE Alu 2 145 -2 3 1642 285 297 13 13 chr4 138636962 138636973 -16993147 + B4 SINE B4 195 205 -87 3 1642 297 0 0 0 chr4 138636973 138637006 -16993114 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1642 285 297 13 13 chr4 138637006 138637069 -16993051 + B4 SINE B4 206 269 -23 3 1642 333 118 0 0 chr4 138639684 138639735 -16990385 + (TCC)n Simple_repeat Simple_repeat 2 52 0 3 1642 1355 61 39 16 chr4 138639755 138639937 -16990183 - B2_Mm2 SINE B2 -9 186 1 3 1642 825 11 0 0 chr4 138640007 138640101 -16990019 + (TC)n Simple_repeat Simple_repeat 1 94 0 3 1642 366 23 0 0 chr4 138640101 138640143 -16989977 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1642 306 347 31 72 chr4 138640631 138640902 -16989218 - L2c LINE L2 -204 3183 2920 3 1642 361 250 0 0 chr4 138641675 138641755 -16988365 - ID_B1 SINE B4 -24 200 121 3 1642 329 215 0 15 chr4 138641876 138641942 -16988178 + ID4_ SINE ID 3 67 -16 3 1642 211 273 73 34 chr4 138643594 138643713 -16986407 + MIRb SINE MIR 51 178 -90 3 1642 450 0 0 0 chr4 138645810 138645860 -16984260 + (TTA)n Simple_repeat Simple_repeat 1 50 0 3 1642 874 179 0 14 chr4 138645861 138646003 -16984117 - B1_Mur2 SINE Alu -8 141 2 3 1642 244 409 0 9 chr4 138646152 138646268 -16983852 + MIRb SINE MIR 94 208 -60 3 1642 25 31 0 0 chr4 138648740 138648772 -16981348 + GC_rich Low_complexity Low_complexity 1 32 0 3 1642 28 48 0 0 chr4 138648883 138648925 -16981195 + GC_rich Low_complexity Low_complexity 1 42 0 3 1642 338 293 30 10 chr4 138649558 138649658 -16980462 + ID_B1 SINE B4 2 103 -121 3 1642 387 304 70 0 chr4 138650407 138650522 -16979598 + ID_B1 SINE B4 98 220 -4 3 1642 629 262 18 48 chr4 138650524 138650692 -16979428 + RSINE1 SINE B4 2 164 -1 3 1642 231 61 0 0 chr4 138650692 138650725 -16979395 + (CTAA)n Simple_repeat Simple_repeat 4 36 0 3 1642 243 339 70 8 chr4 138651918 138652046 -16978074 - L2a LINE L2 0 3426 3291 3 1642 309 229 0 24 chr4 138652186 138652271 -16977849 + MIRb SINE MIR 184 266 -2 3 1642 275 328 72 0 chr4 138652433 138652558 -16977562 + Lx8 LINE L1 7182 7315 -158 3 1642 534 258 21 142 chr4 138652568 138652758 -16977362 + B3A SINE B2 2 168 -30 3 1642 225 0 0 0 chr4 138652778 138652803 -16977317 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1642 263 93 0 23 chr4 138652839 138652883 -16977237 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1642 354 197 21 21 chr4 138652976 138653116 -16977004 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 1642 756 235 46 74 chr4 138653145 138653361 -16976759 - B3 SINE B2 -5 211 2 3 1642 563 168 55 33 chr4 138653378 138653507 -16976613 - B1_Mur1 SINE Alu 0 149 20 3 1642 371 192 40 17 chr4 138653908 138654083 -16976037 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1642 428 300 18 42 chr4 138654095 138654262 -16975858 - RSINE1 SINE B4 0 165 3 3 1642 268 319 14 0 chr4 138654810 138654882 -16975238 + ID4 SINE ID 9 81 -2 3 1642 912 137 101 6 chr4 138655377 138655546 -16974574 + URR1B DNA MER1_type 36 220 -5 3 1642 604 226 0 29 chr4 138655676 138655813 -16974307 + B1_Mur2 SINE Alu 17 149 0 3 1642 355 245 31 41 chr4 138655955 138656053 -16974067 + B4A SINE B4 1 97 -195 3 1642 659 269 19 133 chr4 138656060 138656270 -16973850 + B3A SINE B2 10 195 0 3 1642 294 366 98 0 chr4 138656591 138656714 -16973406 + MIRb SINE MIR 133 267 -1 3 1642 393 194 0 79 chr4 138656816 138656917 -16973203 - PB1D9 SINE Alu 0 120 28 3 1642 187 288 32 63 chr4 138657291 138657354 -16972766 - MIRb SINE MIR -91 177 117 3 1642 198 269 89 13 chr4 138659301 138659380 -16970740 - L4 LINE RTE -1656 373 289 4 1642 771 214 112 6 chr4 138660663 138660842 -16969278 + B3 SINE B2 19 216 0 4 1642 257 221 14 14 chr4 138662273 138662342 -16967778 - ID4 SINE ID -12 71 3 4 1642 387 215 72 36 chr4 138662757 138662868 -16967252 - PB1D10 SINE Alu -1 116 2 4 1642 317 272 26 26 chr4 138663006 138663123 -16966997 - PB1D10 SINE Alu 0 117 1 4 1642 261 261 62 0 chr4 138663156 138663221 -16966899 + BC1_Mm scRNA scRNA 2 70 -82 4 1642 225 311 66 26 chr4 138663221 138663232 -16966888 + ID SINE ID 2 80 -144 4 1642 893 259 75 75 chr4 138663470 138663762 -16966358 - B4 SINE B4 0 292 1 4 1642 436 204 37 37 chr4 138663800 138663907 -16966213 - PB1D9 SINE Alu -12 108 2 4 1642 186 43 0 0 chr4 138664246 138664269 -16965851 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1642 26 50 0 0 chr4 138664505 138664545 -16965575 + AT_rich Low_complexity Low_complexity 1 40 0 4 1642 240 246 145 81 chr4 138664622 138664633 -16965487 + ID_B1 SINE B4 78 204 -15 4 1642 418 194 167 0 chr4 138664633 138664741 -16965379 + B1F2 SINE Alu 2 127 -22 4 1642 716 255 7 0 chr4 138664892 138665037 -16965083 + B1_Mus1 SINE Alu 1 146 -2 4 1642 885 187 8 148 chr4 138665670 138665914 -16964206 - B3 SINE B2 -5 211 2 4 1642 629 230 0 41 chr4 138665943 138666088 -16964032 + ID_B1 SINE B4 85 223 -1 4 1642 1294 85 6 22 chr4 138667883 138668063 -16962057 - B2_Mm2 SINE B2 -18 177 1 4 1642 861 194 97 20 chr4 138668204 138668399 -16961721 - B3 SINE B2 -6 210 1 4 1642 1171 180 11 11 chr4 138668818 138669009 -16961111 + B3 SINE B2 1 191 -25 4 1642 1299 73 84 0 chr4 138669062 138669240 -16960880 + B2_Mm2 SINE B2 1 193 -2 4 1642 277 268 81 11 chr4 138669258 138669345 -16960775 + PB1 SINE Alu 17 109 -18 4 1642 866 141 7 0 chr4 138669456 138669591 -16960529 - B1_Mus1 SINE Alu -10 138 3 4 1642 241 262 272 12 chr4 138670293 138670374 -16959746 - PB1D10 SINE Alu -15 102 1 4 1642 225 318 45 27 chr4 138671312 138671422 -16958698 - MIRc SINE MIR -71 197 86 4 1642 1101 157 21 31 chr4 138671700 138671891 -16958229 + B3 SINE B2 2 190 -26 4 1642 369 0 0 0 chr4 138671903 138671944 -16958176 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1642 1387 66 38 0 chr4 138672988 138673171 -16956949 - B2_Mm2 SINE B2 -5 190 1 4 1642 358 254 36 210 chr4 138673210 138673370 -16956750 - B3A SINE B2 -13 185 63 4 1642 603 125 242 0 chr4 138673370 138673490 -16956630 - B1_Mur4 SINE Alu -1 149 1 4 1642 358 254 36 210 chr4 138673490 138673553 -16956567 - B3A SINE B2 -136 62 1 4 1642 200 163 23 0 chr4 138674044 138674087 -16956033 + GA-rich Low_complexity Low_complexity 3 46 0 4 1643 330 280 38 57 chr4 138674480 138674586 -16955534 - L1ME1 LINE L1 -161 6018 5915 4 1643 326 322 81 34 chr4 138674781 138674990 -16955130 - L1ME1 LINE L1 -592 5570 5352 4 1643 748 160 83 15 chr4 138675098 138675231 -16954889 + B1_Mus1 SINE Alu 1 142 -6 4 1643 418 241 235 5 chr4 138675435 138675635 -16954485 - L1ME1 LINE L1 -1202 4944 4699 4 1643 384 258 74 5 chr4 138675635 138675756 -16954364 + PB1D7 SINE Alu 12 135 -13 4 1643 985 221 29 5 chr4 138675795 138676000 -16954120 - B3 SINE B2 -6 210 1 4 1643 232 206 58 14 chr4 138676158 138676227 -16953893 + B1F2 SINE Alu 48 119 -30 4 1643 254 100 25 0 chr4 138677360 138677400 -16952720 + L1M4 LINE L1 5623 5663 -515 4 1643 1789 212 46 49 chr4 138677407 138677959 -16952161 - RMER19C LTR ERVK -238 664 109 4 1643 353 373 62 58 chr4 138678014 138678290 -16951830 + B4 SINE B4 5 281 -11 4 1643 423 0 0 0 chr4 138678359 138678406 -16951714 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1643 761 111 17 25 chr4 138678486 138678606 -16951514 - PB1D9 SINE Alu 0 120 2 4 1643 184 282 141 0 chr4 138678809 138678887 -16951233 + L3b LINE CR1 287 375 -107 4 1643 600 210 26 53 chr4 138678914 138679065 -16951055 - B1_Mur3 SINE Alu -1 148 2 4 1643 326 307 34 11 chr4 138679226 138679315 -16950805 + B3A SINE B2 22 112 -86 4 1643 685 196 64 14 chr4 138679433 138679573 -16950547 + B1_Mur3 SINE Alu 1 147 -2 4 1643 728 145 105 0 chr4 138679946 138680070 -16950050 - B1_Mus1 SINE Alu -11 137 1 4 1643 459 0 0 0 chr4 138680358 138680409 -16949711 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1643 213 39 0 0 chr4 138680409 138680434 -16949686 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1643 739 147 39 0 chr4 138680575 138680704 -16949416 + B1_Mur4 SINE Alu 10 143 -7 4 1643 570 282 0 8 chr4 138681060 138681185 -16948935 - B1F1 SINE Alu -1 148 25 4 1643 225 303 97 39 chr4 138681107 138681210 -16948910 - MT2B LTR ERVL -346 255 147 4 1643 1270 68 68 0 chr4 138681259 138681435 -16948685 + B2_Mm1t SINE B2 1 188 -5 4 1643 660 117 9 28 chr4 138681463 138681569 -16948551 + B1_Mus2 SINE Alu 44 147 0 4 1643 436 209 390 7 chr4 138682340 138682494 -16947626 + B3 SINE B2 1 213 -3 4 1643 652 175 39 8 chr4 138682574 138682701 -16947419 - B3A SINE B2 -58 140 10 4 1643 615 157 89 65 chr4 138683268 138683391 -16946729 + B1_Mm SINE Alu 22 147 0 4 1643 539 223 148 8 chr4 138683519 138683641 -16946479 + RSINE1 SINE B4 3 141 -24 4 1643 234 0 0 0 chr4 138683645 138683671 -16946449 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1643 2043 40 12 0 chr4 138683749 138683999 -16946121 + L1Md_F3 LINE L1 6317 6569 -15 4 1643 325 83 0 0 chr4 138684154 138684202 -16945918 + B1_Mur4 SINE Alu 102 149 -1 4 1643 348 180 147 20 chr4 138684519 138684621 -16945499 - B1F SINE Alu -3 146 32 4 1643 765 228 125 0 chr4 138684855 138685039 -16945081 + B3 SINE B2 2 208 -8 4 1643 193 326 90 0 chr4 138685091 138685180 -16944940 - MIRb SINE MIR -72 196 100 4 1643 234 314 0 14 chr4 138685428 138685499 -16944621 + PB1D10 SINE Alu 7 76 -41 4 1643 392 293 214 22 chr4 138685596 138685774 -16944346 + B4A SINE B4 1 212 -80 4 1643 421 209 191 0 chr4 138685772 138685887 -16944233 + B1F1 SINE Alu 7 143 -6 4 1643 384 297 122 56 chr4 138685887 138685946 -16944174 + B4A SINE B4 121 275 -17 4 1643 366 187 58 0 chr4 138687290 138687445 -16942675 + (TA)n Simple_repeat Simple_repeat 1 164 0 4 1643 1134 75 7 0 chr4 138687465 138687611 -16942509 - B1_Mus1 SINE Alu 0 148 2 4 1643 189 0 0 0 chr4 138687658 138687679 -16942441 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1643 748 192 8 0 chr4 138687682 138687812 -16942308 - B1_Mus2 SINE Alu -12 135 5 4 1643 468 263 38 44 chr4 138687929 138688088 -16942032 - RSINE1 SINE B4 -5 160 3 4 1643 2063 156 135 13 chr4 138688102 138688554 -16941566 - RMER4B LTR ERVK -13 453 2 4 1643 1451 46 6 0 chr4 138688858 138689032 -16941088 - B2_Mm1a SINE B2 -18 175 1 4 1643 1583 43 16 0 chr4 138689315 138689502 -16940618 + B2_Mm1a SINE B2 2 191 -2 4 1643 945 247 165 83 chr4 138689578 138690033 -16940087 + RMER13A LTR ERVK 1 492 -368 4 1643 459 0 0 0 chr4 138690123 138690174 -16939946 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1643 441 252 40 147 chr4 138690539 138690790 -16939330 + ID_B1 SINE B4 1 224 0 4 1643 295 315 48 6 chr4 138690821 138690987 -16939133 + (CATA)n Simple_repeat Simple_repeat 4 176 0 4 1643 914 162 7 0 chr4 138691171 138691313 -16938807 - B1_Mus1 SINE Alu -1 147 5 4 1643 561 204 26 17 chr4 138691319 138691434 -16938686 - B1F1 SINE Alu -1 148 33 4 1643 407 286 0 9 chr4 138691630 138691743 -16938377 + PB1D10 SINE Alu 1 112 -5 4 1643 578 278 144 45 chr4 138691761 138692025 -16938095 + B4A SINE B4 3 292 0 4 1643 1489 139 124 111 chr4 138692026 138692306 -16937814 + ORR1C1 LTR MaLR 1 275 -103 4 1643 279 0 0 0 chr4 138692306 138692337 -16937783 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1643 1489 139 124 111 chr4 138692337 138692427 -16937693 + ORR1C1 LTR MaLR 276 376 -2 4 1643 247 235 159 34 chr4 138692574 138692662 -16937458 - ID_B1 SINE B4 -123 101 3 4 1643 26 0 0 0 chr4 138692680 138692706 -16937414 + AT_rich Low_complexity Low_complexity 1 26 0 4 1643 1285 67 0 0 chr4 138692774 138692938 -16937182 - B2_Mm2 SINE B2 -31 164 1 4 1643 327 118 0 40 chr4 138693020 138693078 -16937042 + B1_Mur2 SINE Alu 72 147 -2 4 1643 318 277 78 26 chr4 138693093 138693208 -16936912 + L1MC4 LINE L1 6823 6943 -1099 4 1643 465 19 0 0 chr4 138693220 138693274 -16936846 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1643 592 232 0 18 chr4 138693274 138693379 -16936741 - PB1D9 SINE Alu -15 105 2 4 1643 712 268 50 5 chr4 138693385 138693435 -16936685 - B3 SINE B2 -3 213 163 4 1643 366 23 0 0 chr4 138693435 138693478 -16936642 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1643 712 268 50 5 chr4 138693478 138693626 -16936494 - B3 SINE B2 -54 162 7 4 1643 324 228 81 150 chr4 138693665 138693732 -16936388 - B1F1 SINE Alu 0 149 86 4 1643 3594 38 28 9 chr4 138693732 138694160 -16935960 + RLTR10C LTR ERVK 1 436 0 4 1643 324 228 81 150 chr4 138694160 138694252 -16935868 - B1F1 SINE Alu -64 85 1 4 1643 1532 43 21 0 chr4 138694293 138694481 -16935639 - B2_Mm1a SINE B2 0 193 2 4 1643 246 217 0 0 chr4 138694997 138695066 -16935054 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1643 292 222 0 18 chr4 138695084 138695139 -16934981 + RSINE1 SINE B4 3 56 -109 4 1643 288 0 0 0 chr4 138695146 138695178 -16934942 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1643 237 65 0 0 chr4 138695246 138695277 -16934843 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 4 1643 1225 83 0 11 chr4 138695277 138695459 -16934661 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1643 468 0 0 0 chr4 138695467 138695519 -16934601 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 5 1643 198 0 0 0 chr4 138695519 138695540 -16934580 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 5 1643 733 104 191 0 chr4 138695540 138695655 -16934465 - B1_Mur3 SINE Alu -8 141 5 5 1643 216 103 26 0 chr4 138695664 138695703 -16934417 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1643 237 33 0 0 chr4 138695870 138695900 -16934220 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1643 319 236 33 22 chr4 138695908 138695999 -16934121 - PB1D10 SINE Alu 0 117 26 5 1643 219 206 130 14 chr4 138696109 138696178 -16933942 - ID4 SINE ID -5 78 2 5 1643 294 29 0 0 chr4 138696292 138696327 -16933793 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 5 1643 1272 205 172 106 chr4 138696676 138697123 -16932997 - MT2A LTR ERVL 0 601 16 5 1643 225 343 48 29 chr4 138697238 138697343 -16932777 - L2a LINE L2 -319 3107 3001 5 1643 249 263 93 21 chr4 138697370 138697467 -16932653 - L2a LINE L2 -491 2928 2825 5 1643 207 88 0 0 chr4 138697493 138697527 -16932593 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 5 1643 737 175 0 49 chr4 138697531 138697675 -16932445 - B1_Mur3 SINE Alu -12 137 1 5 1643 420 111 0 0 chr4 138697774 138697837 -16932283 + (A)n Simple_repeat Simple_repeat 1 63 0 5 1643 600 266 50 0 chr4 138697923 138698062 -16932058 + B1_Mur1 SINE Alu 3 148 -1 5 1643 445 254 58 29 chr4 138698059 138698197 -16931923 + RSINE1 SINE B4 23 164 -1 5 1643 301 257 0 67 chr4 138698307 138698382 -16931738 + BC1_Mm scRNA scRNA 20 89 -63 5 1643 439 298 85 121 chr4 138698376 138698452 -16931668 + MER2 DNA MER2_type 73 169 -176 5 1643 373 302 17 91 chr4 138698452 138698627 -16931493 + RSINE1 SINE B4 2 163 -2 5 1643 439 298 85 121 chr4 138698627 138698660 -16931460 + MER2 DNA MER2_type 170 200 -145 5 1643 279 0 0 0 chr4 138698660 138698691 -16931429 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1643 439 298 85 121 chr4 138698691 138698862 -16931258 + MER2 DNA MER2_type 201 344 -1 5 1643 228 218 221 26 chr4 138698932 138699045 -16931075 - LTR16D2 LTR ERVL 0 572 438 5 1643 468 226 37 20 chr4 138699158 138699287 -16930833 + B4A SINE B4 2 131 -161 5 1643 219 271 26 131 chr4 138699287 138699311 -16930809 + B2_Mm2 SINE B2 2 138 -57 5 1643 211 254 17 0 chr4 138699319 138699378 -16930742 + RSINE1 SINE B4 76 135 -30 5 1643 363 121 0 0 chr4 138699434 138699492 -16930628 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 5 1643 213 277 40 69 chr4 138699624 138699725 -16930395 + PB1D9 SINE Alu 23 120 0 5 1643 563 219 86 62 chr4 138699933 138700142 -16929978 - ID_B1 SINE B4 -8 216 3 5 1643 351 135 38 63 chr4 138700269 138700348 -16929772 + MT2B LTR ERVL 188 264 -337 5 1643 765 52 0 0 chr4 138700282 138700379 -16929741 + B1_Mus1 SINE Alu 48 144 -4 5 1643 297 281 0 12 chr4 138700929 138701012 -16929108 + ID4 SINE ID 2 83 0 5 1643 715 230 96 5 chr4 138701194 138701318 -16928802 - B3 SINE B2 0 216 75 5 1643 462 79 0 0 chr4 138701318 138701381 -16928739 + (CGTG)n Simple_repeat Simple_repeat 1 63 0 5 1643 715 230 96 5 chr4 138701381 138701453 -16928667 - B3 SINE B2 -142 74 3 5 1643 1358 65 32 21 chr4 138701957 138702145 -16927975 - B2_Mm2 SINE B2 -5 190 1 5 1643 386 307 62 81 chr4 138702251 138702405 -16927715 - ID_B1 SINE B4 -8 216 66 5 1643 609 14 0 0 chr4 138702405 138702475 -16927645 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1643 386 307 62 81 chr4 138702475 138702529 -16927591 - ID SINE ID -159 65 12 5 1643 207 0 0 0 chr4 138702550 138702573 -16927547 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1643 270 196 0 18 chr4 138703073 138703130 -16926990 + ID SINE ID 1 56 -168 5 1643 252 154 0 0 chr4 138703212 138703251 -16926869 + B2_Mm2 SINE B2 8 46 -149 5 1643 797 183 0 7 chr4 138703355 138703498 -16926622 - B1_Mus2 SINE Alu -1 146 5 5 1643 500 218 71 18 chr4 138703889 138704001 -16926119 - PB1D9 SINE Alu -2 118 1 5 1643 395 169 0 15 chr4 138704020 138704086 -16926034 + B3A SINE B2 48 112 -86 5 1643 24 67 0 0 chr4 138704532 138704577 -16925543 + AT_rich Low_complexity Low_complexity 1 45 0 5 1643 528 269 75 0 chr4 138704654 138704788 -16925332 + RSINE1 SINE B4 2 145 -20 5 1643 844 71 7 34 chr4 138705131 138705236 -16924884 + (TTC)n Simple_repeat Simple_repeat 1 102 0 5 1643 1065 145 0 0 chr4 138705236 138705415 -16924705 + (TCC)n Simple_repeat Simple_repeat 2 180 0 5 1643 844 71 7 34 chr4 138705415 138705455 -16924665 + (TTC)n Simple_repeat Simple_repeat 3 42 0 5 1643 659 162 145 0 chr4 138705455 138705572 -16924548 - B1_Mur4 SINE Alu -5 145 12 5 1643 1223 148 0 5 chr4 138705575 138705772 -16924348 + RMER17C LTR ERVK 215 410 0 5 1643 1097 188 302 3 chr4 138705790 138706078 -16924042 - MT2A LTR ERVL -68 465 92 5 1643 2420 70 16 0 chr4 138706304 138706618 -16923502 - ORR1A2 LTR MaLR -8 319 1 5 1643 266 200 221 0 chr4 138706849 138706891 -16923229 - MT2A LTR ERVL -417 116 63 5 1643 1013 68 90 0 chr4 138706891 138707024 -16923096 + B1_Mus1 SINE Alu 3 147 -1 5 1643 306 88 55 0 chr4 138707024 138707076 -16923044 - MT2A LTR ERVL -471 62 1 5 1643 313 288 0 24 chr4 138707187 138707269 -16922851 + B4 SINE B4 8 87 -205 5 1643 245 256 23 0 chr4 138707269 138707355 -16922765 + GA-rich Low_complexity Low_complexity 2 89 0 5 1643 858 250 19 14 chr4 138707364 138707575 -16922545 + B3 SINE B2 5 216 0 5 1643 835 144 0 23 chr4 138707593 138707721 -16922399 - B1_Mus2 SINE Alu -5 142 18 5 1643 392 234 16 126 chr4 138707623 138707750 -16922370 - MT2B LTR ERVL -337 264 152 5 1643 1351 31 0 0 chr4 138707867 138708027 -16922093 + B2_Mm1a SINE B2 1 160 -33 5 1643 197 33 33 0 chr4 138708027 138708057 -16922063 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1643 197 209 70 0 chr4 138708117 138708160 -16921960 + L4 LINE RTE 1097 1142 -887 5 1643 261 251 45 67 chr4 138708421 138708555 -16921565 + L2a LINE L2 2980 3109 -317 5 1643 337 230 60 100 chr4 138708879 138708922 -16921198 + MT2B2 LTR ERVL 121 157 -427 5 1643 901 113 42 14 chr4 138708922 138709065 -16921055 + B1_Mur2 SINE Alu 2 148 -1 5 1643 189 74 0 0 chr4 138709076 138709103 -16921017 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1643 950 206 58 5 chr4 138709288 138709493 -16920627 - B3 SINE B2 0 216 1 5 1643 240 248 16 0 chr4 138709515 138709597 -16920523 + MIR SINE MIR 40 122 -146 5 1643 543 237 30 66 chr4 138709757 138709768 -16920352 - CYRA11_Mm Unknown Y-chromosome -293 324 244 5 1643 1002 84 0 34 chr4 138709768 138709916 -16920204 + URR1B DNA MER1_type 83 225 0 5 1643 189 0 0 0 chr4 138710007 138710028 -16920092 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1643 1011 250 29 79 chr4 138711316 138711537 -16918583 + B4A SINE B4 1 215 -77 5 1643 1145 62 0 20 chr4 138711537 138711686 -16918434 + B1_Mus1 SINE Alu 2 147 -1 5 1643 1011 250 29 79 chr4 138711686 138711742 -16918378 + B4A SINE B4 216 264 -28 5 1643 259 319 105 56 chr4 138711687 138711830 -16918290 + RMER12 LTR ERVK 702 851 -471 5 1643 4241 53 0 0 chr4 138711850 138712358 -16917762 - L1_Mus1 LINE L1 0 6567 6060 5 1643 1628 49 0 24 chr4 138712358 138712569 -16917551 + L1_Mus1 LINE L1 5864 6069 -497 5 1643 393 262 58 10 chr4 138712962 138713066 -16917054 - PB1D10 SINE Alu -1 116 8 5 1643 258 56 0 0 chr4 138713208 138713244 -16916876 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 5 1643 811 169 0 20 chr4 138713245 138713396 -16916724 - B1_Mur1 SINE Alu -1 148 1 5 1643 324 0 0 0 chr4 138713415 138713451 -16916669 + (CATA)n Simple_repeat Simple_repeat 4 39 0 5 1643 268 277 31 0 chr4 138713473 138713538 -16916582 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 5 1643 527 291 7 33 chr4 138713710 138713863 -16916257 - B3 SINE B2 -37 179 31 5 1643 944 111 37 0 chr4 138713863 138713998 -16916122 - B1_Mus1 SINE Alu -8 140 1 5 1643 213 390 0 0 chr4 138714028 138714110 -16916010 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1643 624 268 57 25 chr4 138714119 138714276 -16915844 - RSINE1 SINE B4 -1 164 3 5 1643 570 244 49 65 chr4 138714891 138715075 -16915045 + B3A SINE B2 1 181 -17 5 1643 1223 61 0 0 chr4 138715165 138715313 -16914807 + B1_Mus1 SINE Alu 1 148 0 5 1643 207 100 0 0 chr4 138715313 138715343 -16914777 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1643 949 189 22 33 chr4 138715393 138715574 -16914546 + B3 SINE B2 1 179 -37 5 1643 891 145 0 21 chr4 138715611 138715752 -16914368 - B1_Mur4 SINE Alu -11 139 2 5 1643 264 59 0 0 chr4 138715828 138715862 -16914258 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1643 666 261 22 3 chr4 138715922 138716097 -16914023 - ID_B1 SINE B4 -42 182 9 5 1643 248 225 0 0 chr4 138716409 138716449 -16913671 - ID SINE ID -150 74 35 5 1643 236 100 25 0 chr4 138716531 138716571 -16913549 + (CATA)n Simple_repeat Simple_repeat 2 42 0 5 1643 213 321 105 23 chr4 138716583 138716669 -16913451 + L2c LINE L2 3294 3386 -1 5 1643 611 269 66 36 chr4 138716841 138717036 -16913084 - B3A SINE B2 -2 214 8 5 1643 28 0 0 0 chr4 138717038 138717066 -16913054 + AT_rich Low_complexity Low_complexity 1 28 0 5 1643 2429 138 20 17 chr4 138717075 138717481 -16912639 - MTB_Mm LTR MaLR 0 407 1 5 1643 5192 168 30 146 chr4 138717481 138718900 -16911220 - MTB_Mm-int LTR MaLR 0 1258 5 5 1643 2082 189 180 17 chr4 138718904 138718950 -16911170 - MT2B LTR ERVL 0 601 555 5 1643 534 16 0 0 chr4 138718950 138719013 -16911107 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 5 1643 456 19 0 0 chr4 138719021 138719074 -16911046 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1643 2082 189 180 17 chr4 138719074 138719535 -16910585 - MT2B LTR ERVL -55 546 3 5 1643 665 259 139 0 chr4 138719535 138719693 -16910427 - B3 SINE B2 -22 194 15 5 1643 1074 109 0 0 chr4 138719715 138719862 -16910258 - B1_Mus1 SINE Alu 0 148 2 5 1643 517 336 20 7 chr4 138719891 138720038 -16910082 + B1F SINE Alu 1 149 0 5 1643 433 176 0 0 chr4 138720852 138720926 -16909194 + B3A SINE B2 4 77 -121 5 1643 237 373 19 19 chr4 138720926 138720956 -16909164 + RSINE1 SINE B4 5 108 -57 6 1643 1061 83 143 0 chr4 138721571 138721739 -16908381 + B2_Mm1t SINE B2 1 192 -1 6 1643 227 149 0 175 chr4 138721781 138721838 -16908282 + ID_B1 SINE B4 132 178 -46 6 1643 957 97 0 15 chr4 138721868 138722004 -16908116 - B1_Mus2 SINE Alu -2 145 12 6 1643 951 122 0 51 chr4 138722076 138722232 -16907888 + B1_Mus1 SINE Alu 1 148 0 6 1643 563 301 93 42 chr4 138722319 138722534 -16907586 - MLT1A0 LTR MaLR 0 365 140 6 1643 707 237 13 134 chr4 138722547 138722786 -16907334 - B3 SINE B2 -6 210 1 6 1643 404 174 0 65 chr4 138722798 138722890 -16907230 - B1_Mur4 SINE Alu -5 145 60 6 1643 797 211 83 25 chr4 138723490 138723694 -16906426 + B3 SINE B2 1 216 0 6 1643 604 265 28 54 chr4 138723828 138724050 -16906070 - B3A SINE B2 -2 214 3 6 1643 413 19 0 18 chr4 138724124 138724179 -16905941 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1643 1102 45 0 0 chr4 138724179 138724313 -16905807 - B1_Mus2 SINE Alu -9 138 5 6 1643 357 338 70 0 chr4 138724351 138724493 -16905627 + B3 SINE B2 34 185 -31 6 1643 734 166 60 23 chr4 138724472 138724655 -16905465 - B3A SINE B2 -34 182 1 6 1643 422 86 374 19 chr4 138724841 138724948 -16905172 - B2_Mm2 SINE B2 -4 191 47 6 1643 1254 90 11 0 chr4 138724976 138725153 -16904967 - B2_Mm1a SINE B2 -14 179 1 6 1643 913 246 9 5 chr4 138725501 138725713 -16904407 - ID_B1 SINE B4 -10 214 2 6 1643 321 331 103 52 chr4 138726152 138726423 -16903697 + LTR79 LTR ERVL 243 527 0 6 1643 1661 56 8 4 chr4 138727176 138727410 -16902710 - L1_Mus3 LINE L1 0 6638 6404 6 1643 477 0 0 0 chr4 138727470 138727523 -16902597 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1643 376 354 28 0 chr4 138728106 138728250 -16901870 - B1F SINE Alu -1 148 1 6 1643 1165 36 68 0 chr4 138728460 138729069 -16901051 + (TCTA)n Simple_repeat Simple_repeat 1 650 0 6 1643 620 152 0 9 chr4 138729069 138729182 -16900938 - PB1D9 SINE Alu -8 112 1 6 1643 962 183 13 80 chr4 138729485 138729723 -16900397 - ID_B1 SINE B4 0 224 3 6 1643 181 171 0 28 chr4 138729724 138729760 -16900360 - L2 LINE L2 -600 2819 2785 6 1643 647 256 70 26 chr4 138730004 138730213 -16899907 - B3A SINE B2 -1 215 1 6 1643 434 157 34 49 chr4 138730226 138730358 -16899762 + B1_Mus2 SINE Alu 12 143 -6 6 1643 229 158 0 123 chr4 138730304 138730369 -16899751 + ID_B1 SINE B4 168 224 0 6 1643 793 226 62 24 chr4 138730385 138730594 -16899526 + Lx5 LINE L1 6832 7048 -2 6 1643 406 254 156 0 chr4 138730856 138730978 -16899142 + B1F2 SINE Alu 4 144 -5 6 1643 204 319 0 42 chr4 138731062 138731134 -16898986 + L2c LINE L2 3315 3383 -4 6 1643 216 143 0 0 chr4 138731897 138731939 -16898181 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 6 1643 238 115 19 19 chr4 138732729 138732782 -16897338 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1643 461 184 18 24 chr4 138732805 138732972 -16897148 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 1643 1339 62 0 6 chr4 138733049 138733227 -16896893 + B2_Mm2 SINE B2 2 178 -17 6 1643 317 261 19 0 chr4 138733564 138733673 -16896447 - ID4 SINE ID -38 114 1 6 1643 494 184 71 0 chr4 138733711 138733809 -16896311 - B1_Mur1 SINE Alu -13 136 32 6 1643 221 208 38 0 chr4 138733931 138733984 -16896136 + GA-rich Low_complexity Low_complexity 2 56 0 6 1643 626 262 0 7 chr4 138733997 138734139 -16895981 - B3A SINE B2 -47 151 11 6 1643 1145 36 0 0 chr4 138734244 138734381 -16895739 - B1_Mus2 SINE Alu -10 137 1 6 1643 1555 194 102 43 chr4 138734382 138734775 -16895345 - MTD LTR MaLR -3 416 1 6 1643 817 278 41 0 chr4 138734844 138735038 -16895082 - ID_B1 SINE B4 -21 203 2 6 1643 357 338 57 14 chr4 138735216 138735239 -16894881 - B3A SINE B2 -2 196 175 6 1643 374 0 22 0 chr4 138735239 138735285 -16894835 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1643 415 294 53 1 chr4 138735285 138735402 -16894718 - B3 SINE B2 -24 174 50 6 1643 527 157 9 56 chr4 138735407 138735515 -16894605 - B1F2 SINE Alu -5 144 42 6 1643 234 197 12 112 chr4 138735444 138735524 -16894596 - MT2B LTR ERVL -339 262 191 6 1643 495 192 19 28 chr4 138735544 138735651 -16894469 - PB1 SINE Alu 0 127 22 6 1643 686 262 24 0 chr4 138736686 138736854 -16893266 + B3A SINE B2 1 172 -26 6 1643 789 236 68 19 chr4 138736857 138737064 -16893056 - ID_B1 SINE B4 -7 217 1 6 1643 226 245 0 86 chr4 138737108 138737166 -16892954 - ID_B1 SINE B4 -78 146 94 6 1643 308 102 0 58 chr4 138737125 138737167 -16892953 - B1_Mus1 SINE Alu -94 54 14 6 1643 2042 77 90 0 chr4 138737167 138737467 -16892653 + ORR1A2 LTR MaLR 1 327 0 6 1643 1065 136 0 0 chr4 138737601 138737778 -16892342 + (CATA)n Simple_repeat Simple_repeat 2 178 0 6 1643 652 258 63 63 chr4 138738516 138738723 -16891397 + ID_B1 SINE B4 2 208 -16 6 1643 962 109 58 89 chr4 138738729 138738920 -16891200 + B2_Mm2 SINE B2 1 185 -10 6 1643 211 196 39 0 chr4 138739096 138739147 -16890973 + B1_Mur2 SINE Alu 97 149 0 6 1643 1271 78 67 0 chr4 138739461 138739641 -16890479 + B2_Mm2 SINE B2 3 194 -1 6 1643 456 67 0 0 chr4 138739745 138739805 -16890315 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1643 742 208 125 0 chr4 138739898 138740066 -16890054 - B3 SINE B2 -1 215 27 6 1643 319 143 0 78 chr4 138740073 138740198 -16889922 - B2_Mm2 SINE B2 -1 194 47 6 1643 1042 119 24 0 chr4 138740278 138740446 -16889674 - B2_Mm1t SINE B2 -14 179 8 6 1643 633 271 46 58 chr4 138740444 138740703 -16889417 - B4A SINE B4 -36 256 1 6 1643 194 217 22 0 chr4 138740828 138740874 -16889246 - L2 LINE L2 -1641 1778 1732 6 1643 533 170 52 35 chr4 138740953 138741069 -16889051 - PB1D9 SINE Alu -2 118 1 6 1643 2264 110 3 0 chr4 138741596 138741933 -16888187 - ORR1A1 LTR MaLR -8 338 1 6 1643 275 160 0 0 chr4 138742157 138742207 -16887913 - PB1D10 SINE Alu -65 52 3 6 1643 646 262 55 32 chr4 138742280 138742497 -16887623 + B4A SINE B4 3 224 -68 6 1643 357 78 0 0 chr4 138742497 138742511 -16887609 + (A)n Simple_repeat Simple_repeat 1 14 0 6 1643 1129 75 0 0 chr4 138742511 138742658 -16887462 + B1_Mm SINE Alu 1 147 0 6 1643 357 78 0 0 chr4 138742658 138742694 -16887426 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1643 225 0 0 0 chr4 138742738 138742763 -16887357 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1643 273 209 165 0 chr4 138742896 138742987 -16887133 + MLT1M LTR MaLR 221 326 -346 6 1643 1152 55 7 0 chr4 138743503 138743648 -16886472 - B1_Mus2 SINE Alu -1 146 1 6 1643 636 184 112 0 chr4 138743649 138743774 -16886346 + B1_Mur4 SINE Alu 12 150 0 6 1643 352 211 94 19 chr4 138743782 138743888 -16886232 - B3A SINE B2 -15 183 70 6 1643 402 218 39 0 chr4 138744694 138744772 -16885348 - B4A SINE B4 -58 234 154 6 1643 261 57 0 0 chr4 138744775 138744810 -16885310 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 6 1643 889 149 0 13 chr4 138744812 138744962 -16885158 - B1_Mus1 SINE Alu 0 148 1 6 1643 247 123 32 81 chr4 138744966 138745028 -16885092 - B4A SINE B4 -233 59 1 6 1643 206 136 23 0 chr4 138745522 138745566 -16884554 + (CACCC)n Simple_repeat Simple_repeat 2 46 0 6 1643 242 263 18 0 chr4 138745836 138745893 -16884227 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1643 478 250 0 18 chr4 138745959 138746069 -16884051 - PB1D9 SINE Alu -2 118 11 6 1643 2080 111 72 49 chr4 138746071 138746459 -16883661 - RMER10B LTR ERVL 0 398 2 6 1643 1236 87 27 5 chr4 138746482 138746668 -16883452 - B2_Mm2 SINE B2 -3 192 3 6 1643 708 185 0 0 chr4 138746704 138746823 -16883297 - B1F2 SINE Alu -21 128 10 6 1643 629 228 85 55 chr4 138746829 138747029 -16883091 - B4A SINE B4 -86 206 1 6 1643 254 311 22 11 chr4 138747309 138747400 -16882720 + L2a LINE L2 3090 3181 -245 6 1643 277 275 12 0 chr4 138747995 138748075 -16882045 + ID4 SINE ID 3 83 0 6 1643 21 36 0 0 chr4 138748665 138748693 -16881427 + GC_rich Low_complexity Low_complexity 1 28 0 6 1643 22 56 0 0 chr4 138748795 138748831 -16881289 + GC_rich Low_complexity Low_complexity 1 36 0 6 1643 238 322 23 11 chr4 138751904 138751992 -16878128 + B4A SINE B4 4 92 -200 6 1643 269 248 51 62 chr4 138751992 138752024 -16878096 + B3 SINE B2 4 119 -74 6 1643 583 241 7 28 chr4 138753191 138753336 -16876784 + B1_Mur1 SINE Alu 1 142 -7 6 1643 1085 167 60 5 chr4 138754953 138755152 -16874968 - B3 SINE B2 -6 210 1 6 1643 264 364 36 9 chr4 138756445 138756556 -16873564 - B1F SINE Alu -34 115 2 6 1643 417 286 67 0 chr4 138756464 138756569 -16873551 - ID_B1 SINE B4 -49 175 64 6 1643 183 42 0 0 chr4 138756572 138756596 -16873524 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1643 193 340 18 2 chr4 138757012 138757085 -16873035 - MIRc SINE MIR -50 158 85 6 1643 641 134 49 56 chr4 138757974 138758116 -16872004 - B1_Mur4 SINE Alu -1 149 9 6 1643 321 93 0 0 chr4 138758132 138758186 -16871934 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1643 281 138 321 44 chr4 138758187 138758299 -16871821 - B2_Mm2 SINE B2 -3 192 50 6 1643 1079 113 12 0 chr4 138758318 138758486 -16871634 - B2_Mm1t SINE B2 -22 171 2 6 1643 380 196 40 104 chr4 138758853 138758978 -16871142 + PB1D9 SINE Alu 3 119 -1 7 1643 258 209 14 55 chr4 138759044 138759117 -16871003 + ID4_ SINE ID 12 81 -71 7 1643 245 200 18 0 chr4 138759310 138759365 -16870755 - L1MA6 LINE L1 -121 6179 6124 7 1643 581 302 94 0 chr4 138759383 138759575 -16870545 - ID_B1 SINE B4 -14 210 1 7 1643 362 306 27 0 chr4 138759725 138759836 -16870284 - ID_B1 SINE B4 -9 215 102 7 1643 347 65 0 0 chr4 138760338 138760384 -16869736 - HAL1-3A_ME LINE L1 -844 2014 1969 7 1643 239 247 0 27 chr4 138760873 138760948 -16869172 - ID4 SINE ID -9 74 2 7 1643 1084 231 124 3 chr4 138760990 138761320 -16868800 + ORR1D2 LTR MaLR 1 370 0 7 1643 414 250 46 0 chr4 138761580 138761688 -16868432 + MER2 DNA MER2_type 113 225 -120 7 1643 643 252 7 0 chr4 138761691 138761826 -16868294 + ID_B1 SINE B4 84 219 -5 7 1643 696 249 11 53 chr4 138761849 138762036 -16868084 + B3A SINE B2 15 193 -5 7 1643 490 131 24 0 chr4 138762036 138762120 -16868000 + B1_Mus2 SINE Alu 62 147 0 7 1643 883 254 22 14 chr4 138762270 138762493 -16867627 - ORR1E LTR MaLR -130 229 5 7 1643 362 311 66 15 chr4 138762584 138762721 -16867399 + ID_B1 SINE B4 81 224 0 7 1643 332 270 87 29 chr4 138762931 138763034 -16867086 + PB1D10 SINE Alu 3 111 -6 7 1643 212 114 45 0 chr4 138763054 138763098 -16867022 + T-rich Low_complexity Low_complexity 2 47 0 7 1643 384 263 0 213 chr4 138763123 138763216 -16866904 - RSINE1 SINE B4 -25 140 79 7 1643 315 0 0 0 chr4 138763216 138763251 -16866869 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1643 384 263 0 213 chr4 138763251 138763331 -16866789 - RSINE1 SINE B4 -87 78 4 7 1643 302 200 50 12 chr4 138763381 138763526 -16866594 - B3 SINE B2 0 216 2 7 1643 278 175 192 20 chr4 138763527 138763626 -16866494 - PB1D7 SINE Alu -4 116 1 7 1643 196 326 44 40 chr4 138765204 138765439 -16864681 + MIRb SINE MIR 22 260 -8 7 1643 360 0 0 0 chr4 138765647 138765687 -16864433 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1643 180 0 0 0 chr4 138765771 138765791 -16864329 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1643 248 153 73 44 chr4 138765803 138765903 -16864217 + (CTGTG)n Simple_repeat Simple_repeat 2 105 0 7 1643 392 54 0 75 chr4 138765903 138765983 -16864137 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1643 248 153 73 44 chr4 138765983 138766019 -16864101 + (CTGTG)n Simple_repeat Simple_repeat 1 36 0 7 1643 180 0 0 0 chr4 138766031 138766051 -16864069 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1643 253 148 59 66 chr4 138766063 138766215 -16863905 + (CTGTG)n Simple_repeat Simple_repeat 5 155 0 7 1643 572 262 40 26 chr4 138766261 138766471 -16863649 - MLT1A0 LTR MaLR -17 488 257 7 1643 253 294 11 34 chr4 138766445 138766533 -16863587 - ID_B1 SINE B4 -21 203 118 7 1643 883 221 50 15 chr4 138766871 138767073 -16863047 + B3 SINE B2 1 209 -7 7 1643 221 311 16 0 chr4 138767249 138767310 -16862810 - PB1 SINE Alu -63 64 3 7 1643 370 324 45 17 chr4 138767648 138767827 -16862293 - MIRb SINE MIR -58 210 27 7 1643 209 251 24 87 chr4 138768198 138768297 -16861823 + MIRb SINE MIR 27 134 -134 7 1643 657 190 29 27 chr4 138768924 138769117 -16861003 - B3A SINE B2 -30 186 1 7 1643 337 269 41 32 chr4 138770516 138770639 -16859481 + RSINE1 SINE B4 2 125 -40 7 1643 201 238 0 0 chr4 138771979 138772021 -16858099 + MIRm SINE MIR 220 261 -15 7 1643 402 274 60 33 chr4 138773305 138773456 -16856664 - RSINE1 SINE B4 -7 158 4 7 1643 362 270 0 10 chr4 138773813 138773914 -16856206 + PB1D10 SINE Alu 5 104 -13 7 1643 354 267 49 2 chr4 138773953 138774075 -16856045 + B3A SINE B2 84 214 -2 7 1643 1132 50 0 0 chr4 138774975 138775114 -16855006 - B1_Mus2 SINE Alu -8 139 1 7 1643 425 265 90 8 chr4 138775270 138775403 -16854717 - RSINE1 SINE B4 -9 156 13 7 1643 541 188 372 7 chr4 138777016 138777161 -16852959 + B3 SINE B2 5 202 -14 7 1643 1019 53 0 0 chr4 138777177 138777310 -16852810 + B2_Mm2 SINE B2 2 134 -61 7 1643 443 260 36 175 chr4 138777310 138777322 -16852798 + B4 SINE B4 2 79 -213 7 1643 725 124 0 9 chr4 138777322 138777436 -16852684 + B1_Mus1 SINE Alu 35 147 -1 7 1643 443 260 36 175 chr4 138777436 138777457 -16852663 + B4 SINE B4 80 242 -50 7 1643 210 147 0 0 chr4 138778331 138778365 -16851755 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 7 1643 229 273 39 39 chr4 138778535 138778562 -16851558 - B2_Mm2 SINE B2 -84 111 10 7 1643 297 282 0 53 chr4 138778562 138778637 -16851483 - ID2 SINE ID -4 79 9 7 1643 379 132 26 13 chr4 138778697 138778774 -16851346 + CT-rich Low_complexity Low_complexity 3 80 0 7 1643 368 247 40 20 chr4 138778879 138778978 -16851142 + PB1D10 SINE Alu 2 102 -15 7 1643 352 191 240 21 chr4 138780089 138780185 -16849935 - PB1D9 SINE Alu -1 119 3 7 1643 354 107 0 0 chr4 138781378 138781434 -16848686 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 7 1643 1184 68 0 7 chr4 138781434 138781582 -16848538 - B1_Mus2 SINE Alu 0 147 1 7 1643 258 370 54 24 chr4 138785005 138785171 -16844949 - MIRb SINE MIR -57 211 41 7 1643 298 248 148 0 chr4 138785568 138785716 -16844404 + L1MA4 LINE L1 6070 6239 -61 7 1643 277 292 0 0 chr4 138785768 138785845 -16844275 - ID4_ SINE ID -59 93 17 7 1643 180 0 0 0 chr4 138787015 138787035 -16843085 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 7 1643 431 138 198 21 chr4 138787037 138787133 -16842987 - B1_Mur4 SINE Alu -8 142 30 7 1643 248 303 90 18 chr4 138789180 138789291 -16840829 - MLT1H1 LTR MaLR -379 176 58 7 1643 309 26 0 0 chr4 138789742 138789780 -16840340 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1643 227 256 201 8 chr4 138790242 138790376 -16839744 + L2a LINE L2 3265 3424 -2 7 1643 1216 173 40 0 chr4 138790927 138791129 -16838991 + B3 SINE B2 1 210 -6 7 1643 318 50 0 0 chr4 138791129 138791169 -16838951 + (TATG)n Simple_repeat Simple_repeat 1 40 0 7 1643 183 80 0 0 chr4 138791169 138791194 -16838926 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 7 1643 693 262 71 0 chr4 138792377 138792545 -16837575 - B3A SINE B2 -18 180 1 7 1643 717 311 48 0 chr4 138792556 138792765 -16837355 - ID_B1 SINE B4 -5 219 1 7 1643 790 168 47 99 chr4 138792870 138793062 -16837058 - B3A SINE B2 -16 182 1 7 1643 331 250 0 14 chr4 138794148 138794221 -16835899 - RSINE1 SINE B4 0 165 94 7 1643 295 286 94 81 chr4 138795288 138795448 -16834672 - Charlie1 DNA MER1_type -1771 1010 849 7 1643 215 179 36 0 chr4 138795975 138796031 -16834089 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 7 1643 475 324 57 76 chr4 138796704 138797058 -16833062 + ORR1E LTR MaLR 2 348 -11 7 1643 430 278 28 9 chr4 138797401 138797510 -16832610 - PB1D10 SINE Alu -4 113 3 7 1643 208 121 0 0 chr4 138799213 138799246 -16830874 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 7 1643 293 331 31 31 chr4 138799373 138799535 -16830585 + B4 SINE B4 76 237 -55 7 1643 309 233 10 91 chr4 138799526 138799607 -16830513 + PB1D9 SINE Alu 30 107 -13 7 1643 189 0 0 0 chr4 138799607 138799628 -16830492 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 7 1643 309 233 10 91 chr4 138799628 138799645 -16830475 + PB1D9 SINE Alu 108 120 0 7 1643 274 319 124 6 chr4 138800657 138800818 -16829302 + MIR SINE MIR 77 256 -6 7 1643 201 68 44 22 chr4 138800986 138801031 -16829089 + (TGGGGG)n Simple_repeat Simple_repeat 3 48 0 7 1643 186 43 0 0 chr4 138804796 138804819 -16825301 + (CTGTG)n Simple_repeat Simple_repeat 3 25 0 7 1644 1125 209 19 19 chr4 138806266 138806471 -16823649 + B3 SINE B2 1 205 -11 7 1644 318 214 158 30 chr4 138806480 138806581 -16823539 + PB1D9 SINE Alu 2 115 -5 7 1644 504 276 14 50 chr4 138806615 138806756 -16823364 + ID_B1 SINE B4 76 211 -13 7 1644 705 240 14 0 chr4 138808720 138808866 -16821254 + RSINE1 SINE B4 3 150 -15 7 1644 285 128 0 0 chr4 138808878 138808925 -16821195 + (TGAG)n Simple_repeat Simple_repeat 1 47 0 7 1644 401 258 0 10 chr4 138809051 138809149 -16820971 - PB1 SINE Alu -17 110 14 7 1644 337 311 0 0 chr4 138810594 138810668 -16819452 - ID4_ SINE ID -5 78 5 7 1644 440 256 96 15 chr4 138810671 138810806 -16819314 - B1F SINE Alu -1 148 3 7 1644 282 368 0 0 chr4 138810807 138810894 -16819226 - PB1 SINE Alu -35 92 6 7 1644 1402 99 21 0 chr4 138811033 138811224 -16818896 + B2_Mm2 SINE B2 1 195 0 7 1644 219 371 73 15 chr4 138811569 138811708 -16818412 + MIRb SINE MIR 5 158 -110 7 1644 198 103 0 0 chr4 138813520 138813549 -16816571 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 7 1644 766 185 30 0 chr4 138813730 138813865 -16816255 - B1F2 SINE Alu -8 141 3 7 1644 261 0 0 0 chr4 138815083 138815112 -16815008 + (CAGGG)n Simple_repeat Simple_repeat 4 32 0 7 1644 465 265 68 0 chr4 138815718 138815850 -16814270 - RSINE1 SINE B4 0 165 25 7 1644 291 312 104 0 chr4 138816134 138816230 -16813890 - PB1D10 SINE Alu -1 116 11 7 1644 1332 104 0 5 chr4 138816474 138816658 -16813462 + B2_Mm2 SINE B2 3 185 -10 7 1644 767 193 166 0 chr4 138817051 138817232 -16812888 - B3 SINE B2 -5 211 1 7 1644 213 324 0 13 chr4 138818591 138818666 -16811454 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1644 319 322 93 7 chr4 138818714 138818864 -16811256 - B4A SINE B4 -89 203 41 7 1644 965 233 115 54 chr4 138820006 138820351 -16809769 - MTD LTR MaLR -9 370 1 8 1644 201 162 0 0 chr4 138826084 138826121 -16803999 + A-rich Low_complexity Low_complexity 1 37 0 8 1644 588 95 0 0 chr4 138826358 138826442 -16803678 + (CAGG)n Simple_repeat Simple_repeat 1 84 0 8 1644 195 42 0 0 chr4 138826597 138826621 -16803499 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1644 1168 48 14 0 chr4 138826621 138826766 -16803354 - B1_Mus2 SINE Alu 0 147 1 8 1644 816 221 257 0 chr4 138827045 138827267 -16802853 - B4A SINE B4 -13 279 1 8 1644 231 88 0 0 chr4 138829511 138829545 -16800575 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1644 600 297 33 6 chr4 138829553 138829736 -16800384 - B4A SINE B4 -22 270 83 8 1644 619 174 113 70 chr4 138829772 138829914 -16800206 - B1F2 SINE Alu 0 149 2 8 1644 248 325 106 39 chr4 138829920 138829966 -16800154 - B2_Mm1a SINE B2 0 193 3 8 1644 673 256 8 0 chr4 138829966 138830099 -16800021 - RSINE1 SINE B4 -28 137 4 8 1644 255 325 24 12 chr4 138830107 138830191 -16799929 - B4A SINE B4 -205 87 3 8 1644 215 229 56 14 chr4 138830209 138830280 -16799840 - PB1D10 SINE Alu -33 84 11 8 1644 1242 132 5 16 chr4 138833982 138834175 -16795945 + B2_Mm1t SINE B2 1 191 -2 8 1644 272 275 43 52 chr4 138834265 138834380 -16795740 - PB1D9 SINE Alu -1 119 6 8 1644 312 224 9 0 chr4 138834690 138834760 -16795360 + PB1D10 SINE Alu 16 89 -31 8 1644 1396 59 31 26 chr4 138835379 138835570 -16794550 - B2_Mm2 SINE B2 -3 192 1 8 1644 228 335 64 32 chr4 138837348 138837505 -16792615 - Charlie23a DNA MER1_type -51 288 127 8 1644 234 284 120 18 chr4 138838362 138838511 -16791609 - MIRb SINE MIR -91 171 16 8 1644 753 161 17 0 chr4 138839928 138840046 -16790074 + PB1D9 SINE Alu 1 120 0 8 1644 1409 65 27 0 chr4 138840160 138840344 -16789776 - B2_Mm1a SINE B2 -4 189 1 8 1644 414 0 0 0 chr4 138841158 138841204 -16788916 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1644 508 243 47 0 chr4 138842046 138842153 -16787967 - B3 SINE B2 -104 112 1 8 1644 267 140 0 0 chr4 138847672 138847722 -16782398 + (A)n Simple_repeat Simple_repeat 1 50 0 8 1644 366 218 76 68 chr4 138847967 138848085 -16782035 + PB1D7 SINE Alu 2 120 0 8 1644 380 290 58 7 chr4 138848085 138848224 -16781896 + B1F SINE Alu 3 148 -1 8 1644 475 181 62 31 chr4 138848233 138848330 -16781790 + RSINE1 SINE B4 3 102 -63 8 1644 222 118 0 0 chr4 138848435 138848469 -16781651 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1644 643 261 114 26 chr4 138848872 138849065 -16781055 + B3 SINE B2 3 212 -4 8 1644 1365 86 43 0 chr4 138849071 138849258 -16780862 + B2_Mm2 SINE B2 1 195 0 8 1644 673 65 13 31 chr4 138849269 138849383 -16780737 + B2_Mm2 SINE B2 2 115 -101 8 1644 236 250 0 0 chr4 138849370 138849414 -16780706 + PB1D9 SINE Alu 64 107 -13 8 1644 270 0 0 0 chr4 138849737 138849767 -16780353 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1644 625 147 64 0 chr4 138850073 138850182 -16779938 - B1_Mur1 SINE Alu -32 117 2 8 1644 278 289 24 95 chr4 138850417 138850543 -16779577 + PB1D10 SINE Alu 1 117 0 8 1644 424 179 125 39 chr4 138850615 138850743 -16779377 - B1F1 SINE Alu 0 149 11 8 1644 480 189 53 156 chr4 138850775 138850893 -16779227 - B3A SINE B2 -55 140 34 8 1644 1464 79 26 0 chr4 138850893 138851082 -16779038 + B2_Mm2 SINE B2 2 195 0 8 1644 1209 68 0 0 chr4 138851082 138851228 -16778892 + B1_Mm SINE Alu 1 147 0 8 1644 480 178 58 145 chr4 138851228 138851273 -16778847 - B3A SINE B2 -165 33 3 8 1644 857 248 66 14 chr4 138851434 138851647 -16778473 - ID_B1 SINE B4 0 224 1 8 1644 235 164 0 32 chr4 138852400 138852463 -16777657 + G-rich Low_complexity Low_complexity 1 61 0 8 1644 478 231 36 36 chr4 138852624 138852736 -16777384 + PB1D10 SINE Alu 2 113 -4 8 1644 215 229 29 0 chr4 138855588 138855658 -16774462 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 8 1644 400 167 53 0 chr4 138855725 138855839 -16774281 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 8 1644 393 298 41 6 chr4 138855851 138856020 -16774100 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 8 1644 347 219 0 79 chr4 138856369 138856458 -16773662 + PB1D10 SINE Alu 21 102 -15 8 1644 542 235 10 44 chr4 138857343 138857490 -16772630 + MIR SINE MIR 33 174 -88 8 1644 240 239 134 0 chr4 138859202 138859269 -16770851 - ID SINE ID -148 76 1 8 1644 428 273 8 32 chr4 138859305 138859430 -16770690 - RSINE1 SINE B4 -13 152 31 8 1644 341 287 23 0 chr4 138859511 138859598 -16770522 + ID_B1 SINE B4 3 91 -133 8 1644 428 143 0 12 chr4 138859600 138859685 -16770435 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1644 531 0 0 0 chr4 138859688 138859747 -16770373 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1644 401 240 21 0 chr4 138859747 138859843 -16770277 + B3 SINE B2 112 209 -7 8 1644 303 240 53 80 chr4 138859846 138859959 -16770161 + PB1D9 SINE Alu 9 118 -2 8 1644 1202 75 0 0 chr4 138860037 138860183 -16769937 + B1_Mus2 SINE Alu 2 147 0 8 1644 664 241 73 17 chr4 138860195 138860372 -16769748 + B3 SINE B2 27 213 -3 8 1644 1219 61 7 0 chr4 138860391 138860538 -16769582 + B1_Mus1 SINE Alu 1 148 0 8 1644 1380 110 16 0 chr4 138860562 138860753 -16769367 + B2_Mm2 SINE B2 2 195 0 8 1644 267 295 40 24 chr4 138860772 138860897 -16769223 + ID_B1 SINE B4 87 213 -11 8 1644 382 188 17 7 chr4 138860842 138860925 -16769195 - PB1D10 SINE Alu -15 102 23 8 1644 343 314 37 75 chr4 138860987 138861121 -16768999 - B4 SINE B4 -157 135 7 8 1644 721 253 55 35 chr4 138861149 138861350 -16768770 - B3 SINE B2 -7 209 5 8 1644 718 172 23 0 chr4 138861360 138861488 -16768632 - B1_Mus1 SINE Alu 0 148 18 8 1644 226 282 82 27 chr4 138861977 138862050 -16768070 + MIRc SINE MIR 132 208 -60 8 1644 251 311 0 39 chr4 138862687 138862764 -16767356 + MIR SINE MIR 129 202 -60 8 1644 1192 63 0 0 chr4 138862941 138863084 -16767036 - B1_Mus2 SINE Alu -3 144 2 8 1644 328 333 9 9 chr4 138863094 138863209 -16766911 - PB1D10 SINE Alu -2 115 1 8 1644 1390 90 26 5 chr4 138863314 138863503 -16766617 + B2_Mm2 SINE B2 3 195 0 8 1644 182 284 107 13 chr4 138864488 138864563 -16765557 - MIRc SINE MIR -56 212 131 8 1644 212 412 0 0 chr4 138864800 138864868 -16765252 - ID4 SINE ID -9 74 7 8 1644 189 0 0 0 chr4 138865387 138865408 -16764712 + (GGGAGA)n Simple_repeat Simple_repeat 2 22 0 8 1644 204 261 0 0 chr4 138865421 138865467 -16764653 + A-rich Low_complexity Low_complexity 1 46 0 8 1644 230 106 0 65 chr4 138865632 138865694 -16764426 - ID2 SINE ID -19 64 11 8 1644 628 130 0 10 chr4 138865961 138866062 -16764058 - B1_Mus1 SINE Alu -9 139 40 8 1644 232 225 110 27 chr4 138866001 138866074 -16764046 - RLTR25B LTR ERVK -529 499 421 8 1644 536 303 19 13 chr4 138868477 138868631 -16761489 - B3 SINE B2 -61 155 1 8 1644 1050 133 17 34 chr4 138868703 138868882 -16761238 - B2_Mm2 SINE B2 -19 176 1 8 1644 746 229 147 11 chr4 138869146 138869336 -16760784 - B3 SINE B2 0 216 1 8 1644 22 0 0 0 chr4 138869348 138869370 -16760750 + AT_rich Low_complexity Low_complexity 1 22 0 8 1644 1011 168 21 43 chr4 138869429 138869616 -16760504 - B2_Mm2 SINE B2 -11 184 2 8 1644 273 119 0 0 chr4 138869630 138869672 -16760448 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 8 1644 216 236 58 136 chr4 138869675 138869778 -16760342 - MIR SINE MIR -91 185 84 8 1644 968 119 14 27 chr4 138869833 138869980 -16760140 - B1_Mus2 SINE Alu -1 146 2 8 1644 188 370 74 0 chr4 138871527 138871635 -16758485 + L3 LINE CR1 2127 2242 -2247 8 1644 514 180 35 18 chr4 138871736 138871849 -16758271 + PB1D10 SINE Alu 1 115 -2 8 1644 474 282 176 22 chr4 138871866 138872105 -16758015 + B4A SINE B4 15 290 -2 8 1644 1296 95 10 64 chr4 138872158 138872316 -16757804 + B2_Mm2 SINE B2 3 152 -43 8 1644 1439 34 79 0 chr4 138872316 138872334 -16757786 - B2_Mm1a SINE B2 0 193 176 8 1644 207 0 0 0 chr4 138872334 138872357 -16757763 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1644 1439 34 79 0 chr4 138872357 138872515 -16757605 - B2_Mm1a SINE B2 -18 175 4 8 1644 1296 95 10 64 chr4 138872515 138872559 -16757561 + B2_Mm2 SINE B2 153 194 -1 8 1644 484 219 129 30 chr4 138874511 138874643 -16755477 + B1F2 SINE Alu 5 149 0 8 1644 501 224 178 6 chr4 138874734 138874891 -16755229 - ID_B1 SINE B4 0 224 41 8 1644 22 35 0 0 chr4 138874926 138874955 -16755165 + AT_rich Low_complexity Low_complexity 1 29 0 8 1644 308 300 25 0 chr4 138874958 138875038 -16755082 - PB1 SINE Alu -26 101 20 8 1644 189 0 0 0 chr4 138875098 138875119 -16755001 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1644 768 59 0 0 chr4 138875119 138875221 -16754899 - B1_Mus2 SINE Alu 0 147 46 8 1644 385 235 0 56 chr4 138875943 138876033 -16754087 + PB1D10 SINE Alu 17 101 -16 8 1644 399 135 66 26 chr4 138876075 138876151 -16753969 + B1F SINE Alu 70 148 -1 8 1644 1010 153 37 21 chr4 138876156 138876343 -16753777 + B2_Mm2 SINE B2 2 191 -4 8 1644 262 217 262 12 chr4 138876364 138876448 -16753672 + B1_Mus2 SINE Alu 1 105 -42 8 1644 754 184 151 23 chr4 138876449 138876621 -16753499 + B3 SINE B2 14 207 -9 8 1644 513 0 0 0 chr4 138876628 138876685 -16753435 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 8 1644 865 173 0 21 chr4 138876690 138876832 -16753288 - B1_Mur3 SINE Alu -6 143 5 8 1644 210 114 144 22 chr4 138876835 138876925 -16753195 + (TTTAA)n Simple_repeat Simple_repeat 1 101 0 8 1644 557 144 21 0 chr4 138877090 138877187 -16752933 + PB1D9 SINE Alu 21 119 -1 9 1644 1025 164 103 61 chr4 138877224 138877500 -16752620 + Lx2B LINE L1 6680 6926 -74 9 1644 859 169 0 29 chr4 138877772 138877912 -16752208 + B1_Mur3 SINE Alu 1 136 -13 9 1644 299 73 0 0 chr4 138877963 138878004 -16752116 + RSINE1 SINE B4 81 121 -44 9 1644 1213 113 0 38 chr4 138878005 138878168 -16751952 + B2_Mm2 SINE B2 1 163 -32 9 1644 180 0 0 0 chr4 138878168 138878188 -16751932 + (TAA)n Simple_repeat Simple_repeat 2 21 0 9 1644 270 0 0 0 chr4 138878197 138878227 -16751893 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 1644 495 0 0 0 chr4 138878227 138878281 -16751839 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1644 354 245 95 44 chr4 138878889 138879047 -16751073 + RLTR15 LTR ERVK 1 166 -193 9 1644 1201 55 7 0 chr4 138879100 138879245 -16750875 + B1_Mus1 SINE Alu 3 148 0 9 1644 799 0 0 0 chr4 138879267 138879364 -16750756 + BC1_Mm scRNA scRNA 1 97 -55 9 1644 319 200 0 0 chr4 138879511 138879571 -16750549 - B1F2 SINE Alu -87 62 3 9 1644 534 229 73 8 chr4 138879571 138879642 -16750478 - ID SINE ID -141 83 5 9 1644 203 114 23 0 chr4 138880115 138880159 -16749961 + (TA)n Simple_repeat Simple_repeat 2 46 0 9 1644 1372 71 27 11 chr4 138880159 138880336 -16749784 - B2_Mm1a SINE B2 -11 182 2 9 1644 482 219 9 19 chr4 138880349 138880456 -16749664 - B1F SINE Alu -2 147 42 9 1644 2020 83 78 65 chr4 138880456 138880518 -16749602 - ORR1A3 LTR MaLR 0 326 280 9 1644 1273 40 0 0 chr4 138880518 138880666 -16749454 - B1_Mus1 SINE Alu 0 148 1 9 1644 2020 83 78 65 chr4 138880666 138880925 -16749195 - ORR1A3 LTR MaLR -47 279 1 9 1644 399 302 93 7 chr4 138881207 138881357 -16748763 - RSINE1 SINE B4 0 165 3 9 1644 1273 48 0 0 chr4 138881370 138881517 -16748603 - B1_Mus1 SINE Alu 0 148 2 9 1644 817 192 0 20 chr4 138881573 138881722 -16748398 - B1_Mur1 SINE Alu -1 148 3 9 1644 236 233 82 16 chr4 138881732 138881793 -16748327 - B3 SINE B2 -34 182 118 9 1644 1694 210 59 65 chr4 138881793 138881917 -16748203 - RLTR20C LTR ERVK 0 534 424 9 1644 1182 81 0 0 chr4 138881917 138882065 -16748055 - B1_Mus1 SINE Alu 0 148 1 9 1644 1694 210 59 65 chr4 138882065 138882297 -16747823 - RLTR20C LTR ERVK -111 423 188 9 1644 243 0 0 0 chr4 138882297 138882324 -16747796 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 1644 1694 210 59 65 chr4 138882324 138882455 -16747665 - RLTR20C LTR ERVK -347 187 49 9 1644 513 256 25 17 chr4 138882476 138882595 -16747525 - B3 SINE B2 -91 125 6 9 1644 350 294 28 0 chr4 138882664 138882773 -16747347 - RSINE1 SINE B4 -39 126 15 9 1644 212 250 89 67 chr4 138882791 138882881 -16747239 - PB1 SINE Alu -5 122 31 9 1644 183 146 0 0 chr4 138882893 138882934 -16747186 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 9 1644 1108 188 9 40 chr4 138883162 138883389 -16746731 - URR1B DNA MER1_type 0 225 6 9 1644 1085 110 68 52 chr4 138883400 138883592 -16746528 + B2_Mm2 SINE B2 1 195 0 9 1644 2551 63 19 0 chr4 138883621 138883938 -16746182 - ORR1A2 LTR MaLR 0 327 5 9 1644 339 295 159 13 chr4 138883946 138884097 -16746023 + RCHARR1 DNA MER1_type 42 214 -760 9 1644 531 112 0 0 chr4 138884306 138884386 -16745734 + (TCC)n Simple_repeat Simple_repeat 1 80 0 9 1644 650 228 22 0 chr4 138884389 138884525 -16745595 - B1F2 SINE Alu -5 144 6 9 1644 529 279 44 92 chr4 138884525 138884615 -16745505 - ID_B1 SINE B4 -2 219 5 9 1644 522 184 0 0 chr4 138884614 138884701 -16745419 + B1_Mur2 SINE Alu 42 128 -21 9 1644 1617 51 0 5 chr4 138884703 138884899 -16745221 - B2_Mm2 SINE B2 0 195 1 9 1644 327 49 0 0 chr4 138884917 138884958 -16745162 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1644 339 65 0 0 chr4 138885217 138885263 -16744857 + (TTG)n Simple_repeat Simple_repeat 2 47 0 9 1644 892 109 84 12 chr4 138885416 138885583 -16744537 + URR1A DNA MER1_type 5 183 -43 9 1644 394 313 7 52 chr4 138885718 138885873 -16744247 - ID_B1 SINE B4 -9 215 68 9 1644 410 306 16 0 chr4 138885855 138885976 -16744144 - B1F SINE Alu -26 123 1 9 1644 262 115 0 32 chr4 138886294 138886325 -16743795 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1644 1256 34 0 20 chr4 138886325 138886475 -16743645 + B1_Mus2 SINE Alu 1 147 0 9 1644 262 115 0 32 chr4 138886475 138886506 -16743614 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 9 1644 632 260 41 17 chr4 138887352 138887524 -16742596 - RLTR18B LTR ERVK -5 507 332 9 1644 687 142 90 0 chr4 138887518 138887652 -16742468 + RLTR24 LTR ERV1 384 529 0 9 1644 239 300 50 0 chr4 138887652 138887731 -16742389 - RSINE1 SINE B4 -49 116 34 9 1644 845 205 23 6 chr4 138887715 138887887 -16742233 - B3 SINE B2 -41 175 1 9 1644 521 177 9 0 chr4 138888021 138888134 -16741986 + (TCCA)n Simple_repeat Simple_repeat 1 114 0 9 1644 525 333 40 29 chr4 138888912 138889184 -16740936 - B4A SINE B4 -5 287 13 9 1644 288 301 21 21 chr4 138889196 138889291 -16740829 - BLACKJACK DNA AcHobo -1616 1328 1234 9 1644 252 0 0 0 chr4 138889307 138889335 -16740785 + (TATG)n Simple_repeat Simple_repeat 2 29 0 9 1644 1035 160 21 0 chr4 138889338 138889526 -16740594 - B2_Mm1t SINE B2 0 193 2 9 1644 264 207 0 22 chr4 138889531 138889620 -16740500 - Lx5 LINE L1 -2 7048 6962 9 1644 275 274 16 49 chr4 138890078 138890201 -16739919 - L1MC LINE L1 -579 5754 5636 9 1644 298 269 31 0 chr4 138890206 138890294 -16739826 + B1_Mur2 SINE Alu 30 120 0 9 1644 1121 62 7 0 chr4 138890295 138890441 -16739679 + B1_Mm SINE Alu 1 147 0 9 1644 787 79 71 0 chr4 138890547 138890673 -16739447 - B1_Mus1 SINE Alu -2 146 12 9 1644 259 234 105 11 chr4 138890817 138890851 -16739269 - Lx4B LINE L1 -1 7057 7024 9 1644 228 35 0 0 chr4 138890851 138890880 -16739240 + (C)n Simple_repeat Simple_repeat 1 29 0 9 1644 259 234 105 11 chr4 138890880 138890940 -16739180 - Lx4B LINE L1 -35 7023 6955 9 1644 751 69 0 0 chr4 138890940 138891041 -16739079 - RLTR24 LTR ERV1 -419 110 10 9 1644 845 257 59 38 chr4 138891577 138891816 -16738304 + RLTR18B LTR ERVK 1 244 -268 9 1644 327 135 96 69 chr4 138891824 138891930 -16738190 - B1_Mus2 SINE Alu 0 147 1 9 1644 1040 50 0 21 chr4 138891992 138892134 -16737986 - B1_Mus1 SINE Alu 0 148 10 9 1644 206 93 0 85 chr4 138892158 138892205 -16737915 + A-rich Low_complexity Low_complexity 1 43 0 9 1644 342 98 0 0 chr4 138892195 138892246 -16737874 + (GGA)n Simple_repeat Simple_repeat 3 53 0 9 1644 1176 108 27 5 chr4 138892307 138892494 -16737626 + B2_Mm1t SINE B2 3 193 0 9 1644 461 281 16 0 chr4 138893644 138893765 -16736355 + B1F SINE Alu 1 123 -26 9 1644 347 309 28 41 chr4 138893756 138893901 -16736219 + ID_B1 SINE B4 73 215 -9 9 1644 1908 116 57 17 chr4 138894009 138894360 -16735760 + LSU-rRNA_Hsa rRNA rRNA 4588 4952 -83 9 1644 851 156 37 12 chr4 138894374 138894536 -16735584 - URR1A DNA MER1_type -43 183 18 9 1644 1439 48 3 6 chr4 138894906 138895222 -16734898 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 9 1644 832 112 199 0 chr4 138895234 138895395 -16734725 - B2_Mm2 SINE B2 0 195 3 9 1644 689 68 240 25 chr4 138895413 138895534 -16734586 - B1_Mus2 SINE Alu 0 147 1 9 1644 384 231 0 104 chr4 138895568 138895674 -16734446 - B1_Mur2 SINE Alu -2 147 53 9 1644 339 356 17 0 chr4 138895693 138895811 -16734309 + RCHARR1 DNA MER1_type 243 362 -612 9 1644 411 245 51 0 chr4 138895817 138895915 -16734205 + PB1D9 SINE Alu 17 119 -1 9 1644 437 296 16 22 chr4 138895927 138896120 -16734000 - B3A SINE B2 0 216 30 9 1644 769 150 0 0 chr4 138896130 138896257 -16733863 + B1_Mur4 SINE Alu 11 137 -13 9 1644 414 0 0 0 chr4 138896257 138896303 -16733817 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 9 1644 1076 43 0 0 chr4 138896307 138896446 -16733674 + B2_Mm2 SINE B2 2 140 -55 9 1644 759 186 27 33 chr4 138896499 138896649 -16733471 - B1_Mur4 SINE Alu -1 149 1 9 1644 199 0 31 31 chr4 138896653 138896685 -16733435 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 9 1644 1163 61 0 0 chr4 138896686 138896833 -16733287 - B1_Mus2 SINE Alu 0 147 1 9 1644 275 271 73 27 chr4 138896844 138896954 -16733166 - PB1D10 SINE Alu 0 117 3 9 1644 962 41 0 0 chr4 138897758 138897879 -16732241 - B2_Mm2 SINE B2 -74 121 1 9 1644 649 246 74 15 chr4 138898415 138898617 -16731503 - B3 SINE B2 -1 215 2 9 1644 495 0 0 0 chr4 138899472 138899527 -16730593 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 1644 1193 48 0 0 chr4 138899527 138899674 -16730446 - B1_Mus2 SINE Alu 0 147 1 9 1644 237 280 108 36 chr4 138899887 138899998 -16730122 - MER21B LTR ERV1 -119 744 626 9 1644 252 304 0 0 chr4 138900118 138900174 -16729946 - RSINE1 SINE B4 -108 57 2 9 1644 314 167 237 32 chr4 138900174 138900267 -16729853 - PB1D9 SINE Alu 0 120 9 9 1644 220 176 37 56 chr4 138900223 138900277 -16729843 - B4A SINE B4 -158 134 82 9 1644 380 212 61 9 chr4 138902375 138902489 -16727631 - PB1D9 SINE Alu 0 120 1 9 1644 225 161 123 18 chr4 138902489 138902546 -16727574 - B1F SINE Alu -70 79 17 9 1644 319 262 25 0 chr4 138902828 138902908 -16727212 + PB1D7 SINE Alu 32 113 -7 9 1644 1100 41 0 45 chr4 138903175 138903329 -16726791 + B1_Mus2 SINE Alu 1 147 0 9 1644 444 177 13 0 chr4 138904152 138904231 -16725889 - B3 SINE B2 -136 80 1 9 1644 510 67 0 0 chr4 138906256 138906331 -16723789 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1644 334 274 0 78 chr4 138906757 138906872 -16723248 - PB1D10 SINE Alu 0 117 12 9 1644 410 250 66 8 chr4 138907947 138908068 -16722052 + ID_B1 SINE B4 83 210 -14 1 1644 290 333 51 45 chr4 138908794 138908951 -16721169 - MER45A DNA Tip100 -19 159 2 1 1644 222 37 0 0 chr4 138909279 138909306 -16720814 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1644 798 70 0 9 chr4 138909373 138909489 -16720631 + B2_Mm2 SINE B2 80 194 -1 1 1644 1171 34 0 13 chr4 138909495 138909644 -16720476 + B1_Mus2 SINE Alu 1 147 0 1 1644 1130 29 0 0 chr4 138910380 138910516 -16719604 + B1_Mus2 SINE Alu 1 136 -11 1 1644 197 33 33 0 chr4 138910516 138910546 -16719574 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1644 1484 48 0 16 chr4 138911322 138911514 -16718606 - B2_Mm1a SINE B2 -3 190 2 1 1644 809 194 34 6 chr4 138911521 138911697 -16718423 - B3 SINE B2 -5 211 31 1 1644 494 167 137 0 chr4 138911728 138911830 -16718290 - B1_Mur2 SINE Alu -5 144 29 1 1644 1137 61 0 0 chr4 138912036 138912184 -16717936 - B1_Mus1 SINE Alu 0 148 1 1 1644 407 195 12 0 chr4 138912203 138912285 -16717835 - ID_B1 SINE B4 0 224 142 1 1644 500 266 31 31 chr4 138912338 138912501 -16717619 - RSINE1 SINE B4 -2 163 1 1 1644 226 284 0 29 chr4 138912501 138912563 -16717557 - ID_B1 SINE B4 -70 154 94 1 1644 601 124 147 0 chr4 138912697 138912826 -16717294 + RMER17B LTR ERVK 316 463 -495 1 1644 1306 83 0 6 chr4 138912840 138913022 -16717098 - B2_Mm2 SINE B2 -14 181 1 1 1644 916 167 0 7 chr4 138914070 138914221 -16715899 - B1_Mur4 SINE Alu 0 150 1 1 1644 203 147 0 0 chr4 138914286 138914320 -16715800 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1644 256 288 82 0 chr4 138914328 138914401 -16715719 + PB1D10 SINE Alu 18 96 -21 1 1644 877 152 47 37 chr4 138914404 138914595 -16715525 - B2_Mm2 SINE B2 0 195 3 1 1644 947 48 0 0 chr4 138915525 138915649 -16714471 - B1_Mus1 SINE Alu -1 147 24 1 1644 507 209 8 42 chr4 138915726 138915846 -16714274 - B1_Mur4 SINE Alu -33 117 2 1 1644 1115 64 0 0 chr4 138916576 138916717 -16713403 - B1_Mus2 SINE Alu -6 141 1 1 1644 384 126 287 0 chr4 138917701 138917788 -16712332 - B1_Mus1 SINE Alu -14 134 23 1 1644 618 210 204 0 chr4 138918269 138918445 -16711675 - B3 SINE B2 -3 213 2 1 1644 816 30 0 0 chr4 138919234 138919333 -16710787 + (TG)n Simple_repeat Simple_repeat 1 99 0 1 1644 287 326 60 0 chr4 138920469 138920610 -16709510 - MIR SINE MIR -62 206 46 1 1644 397 214 189 41 chr4 138921946 138922068 -16708052 - B1_Mur1 SINE Alu -8 141 2 1 1644 671 255 31 21 chr4 138922644 138922836 -16707284 - B3A SINE B2 -4 194 1 1 1644 463 300 25 0 chr4 138923667 138923787 -16706333 + RSINE1 SINE B4 7 129 -36 1 1644 621 0 0 0 chr4 138923799 138923868 -16706252 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1 1644 383 252 34 25 chr4 138923891 138924009 -16706111 + PB1D7 SINE Alu 1 119 -1 1 1644 428 168 32 34 chr4 138924207 138924330 -16705790 - B1F1 SINE Alu -14 135 23 1 1644 489 218 307 6 chr4 138924356 138924522 -16705598 - B3 SINE B2 0 216 1 1 1644 503 313 50 89 chr4 138924554 138924733 -16705387 + B3A SINE B2 2 173 -25 1 1644 680 264 13 0 chr4 138924839 138924998 -16705122 + B3 SINE B2 2 162 -54 1 1644 612 0 0 0 chr4 138925111 138925179 -16704941 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 1 1644 318 248 1 1 chr4 138925179 138925252 -16704868 - RSINE1 SINE B4 -215 77 5 1 1644 279 179 28 56 chr4 138925267 138925338 -16704782 - B1_Mur1 SINE Alu 0 149 81 1 1644 728 236 55 47 chr4 138925388 138925624 -16704496 - B4 SINE B4 0 292 55 1 1644 543 237 23 15 chr4 138925922 138926055 -16704065 - B1_Mur1 SINE Alu -15 134 1 1 1644 22 94 0 0 chr4 138926055 138926119 -16704001 + AT_rich Low_complexity Low_complexity 1 64 0 1 1644 214 324 13 13 chr4 138926155 138926230 -16703890 - ID4_ SINE ID -6 77 3 1 1644 259 160 283 0 chr4 138926446 138926528 -16703592 + B1F1 SINE Alu 12 116 -1 1 1644 289 233 192 0 chr4 138926539 138926612 -16703508 + RSINE1 SINE B4 9 95 -70 1 1644 1101 44 7 0 chr4 138928099 138928236 -16701884 - B1_Mm SINE Alu -8 139 2 1 1644 522 0 0 0 chr4 138928261 138928319 -16701801 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1644 268 184 0 0 chr4 138928366 138928415 -16701705 - ID_B1 SINE B4 -2 222 174 1 1644 249 244 62 37 chr4 138928415 138928447 -16701673 - PB1D10 SINE Alu -2 115 33 1 1644 636 129 104 22 chr4 138928465 138928600 -16701520 - B1F2 SINE Alu -1 148 3 1 1644 693 221 54 49 chr4 138928630 138928835 -16701285 - B3 SINE B2 -6 210 5 1 1644 1292 50 60 27 chr4 138928856 138929040 -16701080 - B2_Mm2 SINE B2 -5 190 1 1 1644 1096 68 0 7 chr4 138929440 138929588 -16700532 - B1_Mus2 SINE Alu 0 147 1 1 1644 801 91 10 38 chr4 138930063 138930198 -16699922 + B2_Mm2 SINE B2 22 151 -44 1 1644 592 182 33 65 chr4 138930589 138930742 -16699378 - B1F SINE Alu -1 148 1 1 1644 192 163 0 0 chr4 138931703 138931746 -16698374 + T-rich Low_complexity Low_complexity 1 43 0 1 1644 859 126 7 0 chr4 138932176 138932311 -16697809 - B1_Mur3 SINE Alu 0 149 14 1 1644 357 244 40 127 chr4 138932220 138932370 -16697750 - MT2B LTR ERVL -344 257 121 1 1644 1110 82 0 7 chr4 138932459 138932607 -16697513 - B1_Mm SINE Alu 0 147 1 1 1644 554 184 35 9 chr4 138932611 138932726 -16697394 - PB1D7 SINE Alu 0 120 3 1 1644 260 257 14 41 chr4 138932905 138932978 -16697142 - ID4_ SINE ID -9 74 4 1 1644 394 173 0 26 chr4 138932995 138933072 -16697048 - B1_Mur1 SINE Alu -2 147 73 1 1644 219 286 34 0 chr4 138933110 138933229 -16696891 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1644 402 221 106 0 chr4 138933476 138933580 -16696540 + ID_B1 SINE B4 90 204 -20 1 1644 493 278 127 13 chr4 138933579 138933746 -16696374 + B3A SINE B2 19 192 -1 1 1644 613 196 132 12 chr4 138934087 138934255 -16695865 - B3 SINE B2 -7 209 26 1 1644 634 243 0 20 chr4 138934467 138934478 -16695642 - B1_Mur3 SINE Alu -1 148 138 1 1644 180 0 0 0 chr4 138934478 138934498 -16695622 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1644 634 243 0 20 chr4 138934498 138934637 -16695483 - B1_Mur3 SINE Alu -12 137 1 1 1644 639 230 66 12 chr4 138934642 138934809 -16695311 - B3 SINE B2 -1 215 40 1 1644 599 252 87 18 chr4 138934812 138935009 -16695111 - B3 SINE B2 0 195 2 1 1644 408 277 71 0 chr4 138935189 138935301 -16694819 - B1F2 SINE Alu -2 147 28 1 1644 261 0 0 0 chr4 138935333 138935362 -16694758 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1644 362 315 36 51 chr4 138935383 138935520 -16694600 - B3A SINE B2 -16 182 48 1 1644 300 240 140 28 chr4 138935666 138935773 -16694347 + PB1D7 SINE Alu 2 120 0 1 1644 226 238 88 7 chr4 138935799 138935877 -16694243 + B4A SINE B4 78 160 -64 1 1645 28 29 0 0 chr4 138936780 138936815 -16693305 + GC_rich Low_complexity Low_complexity 1 35 0 1 1645 21 36 0 0 chr4 138937057 138937085 -16693035 + GC_rich Low_complexity Low_complexity 1 28 0 1 1645 710 232 105 116 chr4 138937896 138938086 -16692034 - B3A SINE B2 -6 189 2 1 1645 324 0 0 0 chr4 138938100 138938136 -16691984 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1645 439 17 16 16 chr4 138938136 138938196 -16691924 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1645 730 201 12 30 chr4 138940535 138940704 -16689416 - B2_Mm2 SINE B2 -3 192 27 1 1645 304 152 121 0 chr4 138940719 138940785 -16689335 - B2_Mm2 SINE B2 -121 74 1 1 1645 197 65 0 31 chr4 138941227 138941259 -16688861 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1645 461 293 39 32 chr4 138941260 138941415 -16688705 - RSINE1 SINE B4 -5 160 5 1 1645 1262 86 43 5 chr4 138941499 138941687 -16688433 - B2_Mm2 SINE B2 0 195 1 1 1645 440 316 0 83 chr4 138941832 138942001 -16688119 + ID_B1 SINE B4 2 156 -68 1 1645 294 265 13 159 chr4 138941938 138942007 -16688113 + B1F SINE Alu 13 67 -82 1 1645 1091 76 0 0 chr4 138942007 138942152 -16687968 + B1_Mus1 SINE Alu 4 148 0 1 1645 294 265 13 159 chr4 138942152 138942215 -16687905 + B1F SINE Alu 68 123 -26 1 1645 986 184 61 9 chr4 138942215 138942429 -16687691 + URR1B DNA MER1_type 1 225 0 1 1645 294 265 13 159 chr4 138942429 138942452 -16687668 + B1F SINE Alu 124 146 -3 1 1645 364 217 0 0 chr4 138943766 138943835 -16686285 - ID4_ SINE ID -10 73 5 1 1645 308 328 17 25 chr4 138943846 138943965 -16686155 - PB1D9 SINE Alu -2 118 1 1 1645 977 112 9 0 chr4 138944490 138944708 -16685412 + (TG)n Simple_repeat Simple_repeat 1 220 0 1 1645 819 258 20 20 chr4 138944923 138944942 -16685178 - B3A SINE B2 0 198 180 1 1645 297 0 0 0 chr4 138944942 138944975 -16685145 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1645 819 258 20 20 chr4 138944975 138945153 -16684967 - B3A SINE B2 -19 179 1 1 1645 466 286 178 11 chr4 138945169 138945213 -16684907 - Lx8 LINE L1 0 7473 7425 1 1645 345 24 0 0 chr4 138945213 138945255 -16684865 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1645 466 286 178 11 chr4 138945255 138945479 -16684641 - Lx8 LINE L1 -49 7424 7161 1 1645 234 0 0 0 chr4 138945497 138945523 -16684597 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1 1645 252 184 41 0 chr4 138945537 138945586 -16684534 - B1F SINE Alu -31 118 68 1 1645 775 233 29 162 chr4 138946226 138946467 -16683653 + B3 SINE B2 2 210 -6 1 1645 284 200 153 28 chr4 138946922 138946994 -16683126 - MER58B DNA MER1_type -1 340 260 1 1645 312 27 0 0 chr4 138949529 138949566 -16680554 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1645 1117 223 61 39 chr4 138949650 138949930 -16680190 - B4 SINE B4 -4 288 3 1 1645 546 137 0 0 chr4 138950297 138950392 -16679728 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1645 535 189 16 0 chr4 138950507 138950634 -16679486 + (TA)n Simple_repeat Simple_repeat 2 130 0 1 1645 1199 54 0 39 chr4 138950639 138950792 -16679328 - B1_Mus1 SINE Alu 0 148 2 1 1645 663 237 144 17 chr4 138950792 138950967 -16679153 - B3 SINE B2 -13 203 5 1 1645 472 250 143 26 chr4 138951263 138951493 -16678627 - B4A SINE B4 -16 276 20 1 1645 357 259 174 12 chr4 138951498 138951769 -16678351 - L1MC3 LINE L1 -211 6133 5820 1 1645 1389 42 0 0 chr4 138951773 138951986 -16678134 + (TG)n Simple_repeat Simple_repeat 1 213 0 1 1645 264 277 112 35 chr4 138952065 138952181 -16677939 - PB1 SINE Alu -2 125 1 1 1645 249 325 32 26 chr4 138952193 138952348 -16677772 - L1MC3 LINE L1 -578 5755 5600 1 1645 26 0 0 0 chr4 138953852 138953878 -16676242 + AT_rich Low_complexity Low_complexity 1 26 0 1 1645 504 136 37 0 chr4 138953931 138954012 -16676108 + PB1D9 SINE Alu 24 107 -13 1 1645 186 43 0 0 chr4 138954014 138954037 -16676083 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1645 913 264 30 0 chr4 138954041 138954238 -16675882 - B3 SINE B2 -6 210 8 1 1645 381 93 0 0 chr4 138954259 138954313 -16675807 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1 1645 462 281 37 7 chr4 138954402 138954538 -16675582 - ID_B1 SINE B4 -4 220 81 1 1645 657 234 37 43 chr4 138954921 138955082 -16675038 - RSINE1 SINE B4 -3 162 3 1 1645 432 150 0 0 chr4 138955258 138955338 -16674782 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1645 509 212 85 24 chr4 138956444 138956608 -16673512 + ID_B1 SINE B4 23 196 -28 1 1645 1235 109 6 0 chr4 138957886 138958061 -16672059 - B2_Mm2 SINE B2 -18 177 2 1 1645 386 308 104 8 chr4 138959669 138959803 -16670317 - B1F1 SINE Alu -2 147 1 1 1645 287 300 12 24 chr4 138960090 138960172 -16669948 + PB1D10 SINE Alu 36 116 -1 1 1645 1152 58 0 0 chr4 138961213 138961350 -16668770 + B1_Mus2 SINE Alu 1 137 -10 1 1645 1484 60 0 0 chr4 138961466 138961648 -16668472 - L1_Mus1 LINE L1 0 6567 6386 1 1645 220 129 0 0 chr4 138961982 138962013 -16668107 + PB1D9 SINE Alu 1 31 -89 1 1645 222 37 0 0 chr4 138963336 138963363 -16666757 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1645 262 324 0 19 chr4 138963389 138963496 -16666624 - RSINE1 SINE B4 -56 109 5 1 1645 213 309 0 0 chr4 138964843 138964898 -16665222 + T-rich Low_complexity Low_complexity 5 59 0 1 1645 248 345 25 66 chr4 138964900 138965021 -16665099 - PB1 SINE Alu -11 116 1 1 1645 529 200 67 0 chr4 138965455 138965560 -16664560 - PB1D9 SINE Alu -6 114 3 1 1645 263 256 36 71 chr4 138965485 138965569 -16664551 - MT2B2 LTR ERVL -349 235 155 1 1645 197 252 0 44 chr4 138967776 138967851 -16662269 - L2a LINE L2 -31 3395 3276 1 1645 714 96 0 0 chr4 138967991 138968095 -16662025 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1 1645 899 179 14 0 chr4 138968096 138968241 -16661879 - B1_Mus1 SINE Alu -1 147 1 1 1645 201 39 0 0 chr4 138968257 138968283 -16661837 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1645 287 270 115 62 chr4 138971682 138971942 -16658178 - B4A SINE B4 -18 274 1 1 1645 332 309 19 9 chr4 138972098 138972206 -16657914 - PB1D10 SINE Alu -8 109 1 1 1645 466 196 0 71 chr4 138973801 138973900 -16656220 - B1_Mur4 SINE Alu 0 150 59 1 1645 834 216 23 28 chr4 138973914 138974128 -16655992 - B3 SINE B2 0 216 4 1 1645 477 62 0 0 chr4 138974544 138974609 -16655511 + (GGGA)n Simple_repeat Simple_repeat 3 67 0 1 1645 441 129 0 0 chr4 138974685 138974755 -16655365 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1645 258 293 183 0 chr4 138974791 138974873 -16655247 - PB1D10 SINE Alu -5 112 16 1 1645 549 170 10 60 chr4 138975629 138975729 -16654391 - B1_Mm SINE Alu -52 95 1 1 1645 386 258 22 0 chr4 138975649 138975738 -16654382 - B4A SINE B4 -125 167 77 1 1645 523 0 0 29 chr4 138975744 138975813 -16654307 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1645 549 200 35 0 chr4 138975838 138975953 -16654167 - B3A SINE B2 -79 119 1 1 1645 249 265 268 13 chr4 138978012 138978165 -16651955 - MER105 DNA DNA -5 199 8 1 1645 232 276 93 19 chr4 138979183 138979290 -16650830 - Charlie18a DNA MER1_type -51 291 177 1 1645 582 151 32 56 chr4 138979405 138979531 -16650589 - B1F2 SINE Alu -22 127 5 1 1645 253 326 65 43 chr4 138979420 138979558 -16650562 - B4A SINE B4 -87 205 65 1 1645 284 64 21 0 chr4 138982041 138982088 -16648032 - B3 SINE B2 -5 211 164 1 1645 230 106 149 0 chr4 138982103 138982150 -16647970 - B2_Mm2 SINE B2 -107 88 35 1 1645 2769 156 112 27 chr4 138983188 138983789 -16646331 - RMER1B Other Other -2 1064 413 1 1645 350 228 138 21 chr4 138984171 138984265 -16645855 + PB1D10 SINE Alu 7 111 -6 1 1645 234 243 27 0 chr4 138985128 138985202 -16644918 + Lx9 LINE L1 7441 7516 -128 1 1645 229 231 37 37 chr4 138985656 138985710 -16644410 - ID SINE ID -154 70 17 1 1645 184 235 209 29 chr4 138985932 138986037 -16644083 - MIRc SINE MIR -131 137 14 1 1645 453 195 13 13 chr4 138986417 138986495 -16643625 - ID4 SINE ID -2 81 4 1 1645 338 310 8 42 chr4 138986507 138986625 -16643495 - PB1D10 SINE Alu 0 117 4 1 1645 408 20 0 0 chr4 138986797 138986846 -16643274 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 1 1645 795 262 105 0 chr4 138986846 138987037 -16643083 - ID_B1 SINE B4 -13 211 1 1 1645 216 97 0 0 chr4 138991207 138991238 -16638882 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1645 191 224 32 65 chr4 138991993 138992055 -16638065 + L3 LINE CR1 2154 2213 -2276 1 1645 198 0 0 0 chr4 138992326 138992348 -16637772 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1645 1002 215 19 5 chr4 138993224 138993430 -16636690 + B3 SINE B2 2 210 -6 1 1645 303 237 0 0 chr4 138994435 138994501 -16635619 + PB1D10 SINE Alu 63 148 -1 1 1645 259 382 17 43 chr4 138994554 138994669 -16635451 + PB1D10 SINE Alu 2 113 -4 1 1645 456 287 79 39 chr4 138994680 138994807 -16635313 + RSINE1 SINE B4 9 140 -25 1 1645 387 354 49 0 chr4 138995067 138995231 -16634889 - MER33 DNA MER1_type -129 195 24 1 1645 417 228 25 0 chr4 138995254 138995333 -16634787 - ID4_ SINE ID 0 83 3 1 1645 371 225 219 112 chr4 138995474 138995617 -16634503 + B4A SINE B4 116 278 -14 1 1645 333 62 0 0 chr4 138995617 138995665 -16634455 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 1 1645 371 225 219 112 chr4 138995665 138995681 -16634439 + B4A SINE B4 279 292 0 1 1645 222 308 171 9 chr4 138995693 138995798 -16634322 - L4 LINE RTE -715 1314 1193 1 1645 180 125 0 0 chr4 138999438 138999470 -16630650 + (GGAGAA)n Simple_repeat Simple_repeat 4 35 0 1 1645 451 290 83 22 chr4 139000011 139000191 -16629929 - L1M5 LINE L1 -2615 3531 3341 1 1645 518 246 34 55 chr4 139000210 139000356 -16629764 - B1F1 SINE Alu -1 148 6 2 1645 1083 90 0 40 chr4 139003490 139003640 -16626480 - B1_Mus1 SINE Alu 0 148 5 3 1645 213 39 0 0 chr4 139003640 139003666 -16626454 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 4 1645 192 77 0 0 chr4 139003753 139003779 -16626341 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 5 1645 699 219 7 27 chr4 139003779 139003929 -16626191 - B3 SINE B2 -53 163 17 6 1645 548 291 59 38 chr4 139003925 139004111 -16626009 + B3A SINE B2 6 195 -3 7 1645 658 245 143 41 chr4 139004119 139004315 -16625805 + B3 SINE B2 1 216 0 8 1645 22 56 0 0 chr4 139004318 139004354 -16625766 + AT_rich Low_complexity Low_complexity 1 36 0 9 1645 207 139 0 0 chr4 139004380 139004416 -16625704 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1645 420 272 114 0 chr4 139004429 139004543 -16625577 - RSINE1 SINE B4 -35 130 4 1 1645 253 245 162 19 chr4 139005388 139005542 -16624578 - LTR50 LTR ERVL -619 176 1 1 1645 411 364 91 0 chr4 139005879 139006088 -16624032 + MER2 DNA MER2_type 92 319 -26 1 1645 189 121 0 0 chr4 139009657 139009690 -16620430 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 1 1645 586 236 42 28 chr4 139009700 139009844 -16620276 - RSINE1 SINE B4 -17 148 3 1 1645 341 271 70 77 chr4 139010282 139010438 -16619682 - RSINE1 SINE B4 -8 157 3 1 1645 392 294 148 43 chr4 139010535 139010745 -16619375 - B4A SINE B4 -60 232 1 1 1645 1765 216 146 8 chr4 139012622 139013223 -16616897 - Lx9 LINE L1 -4 7640 6957 1 1645 221 83 0 27 chr4 139013811 139013848 -16616272 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 1645 1204 49 14 0 chr4 139015514 139015658 -16614462 + B1_Mus1 SINE Alu 2 147 -1 2 1645 21 36 0 0 chr4 139015859 139015887 -16614233 + AT_rich Low_complexity Low_complexity 1 28 0 2 1645 519 242 78 57 chr4 139016707 139016886 -16613234 + B3A SINE B2 2 186 -12 2 1645 258 32 0 0 chr4 139016886 139016917 -16613203 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1645 519 242 78 57 chr4 139016917 139016930 -16613190 + B3A SINE B2 187 197 -1 2 1645 192 348 75 58 chr4 139018729 139018903 -16611217 + MIR SINE MIR 54 230 -32 2 1645 1251 54 0 0 chr4 139021866 139022013 -16608107 - B1_Mus1 SINE Alu 0 148 2 2 1645 320 229 181 0 chr4 139022061 139022144 -16607976 + PB1D10 SINE Alu 1 98 -19 2 1645 587 249 172 0 chr4 139022150 139022319 -16607801 + B3A SINE B2 1 198 0 2 1645 934 163 104 126 chr4 139026903 139027134 -16602986 + URR1A DNA MER1_type 1 226 0 2 1645 278 292 42 42 chr4 139029856 139029974 -16600146 + RSINE1 SINE B4 47 164 -1 2 1645 475 294 125 10 chr4 139029977 139030266 -16599854 - L1MD LINE L1 -763 5596 5275 3 1645 517 280 8 0 chr4 139031417 139031542 -16598578 + B1F1 SINE Alu 3 128 -21 3 1645 315 250 14 0 chr4 139033800 139033872 -16596248 + ID4_ SINE ID 1 73 -10 3 1645 2905 129 210 7 chr4 139034132 139034356 -16595764 - RMER6A LTR ERVK 0 756 502 3 1645 369 0 0 0 chr4 139034356 139034397 -16595723 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 3 1645 2905 129 210 7 chr4 139034397 139034786 -16595334 - RMER6A LTR ERVK -255 501 19 3 1645 577 225 0 24 chr4 139036035 139036158 -16593962 + PB1D9 SINE Alu 1 120 0 3 1645 1177 101 89 11 chr4 139036158 139036338 -16593782 + B2_Mm2 SINE B2 2 195 0 3 1645 328 212 0 43 chr4 139040174 139040243 -16589877 + ID4 SINE ID 3 68 -15 3 1645 201 143 0 0 chr4 139040646 139040681 -16589439 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 3 1645 444 86 0 0 chr4 139042074 139042144 -16587976 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 3 1645 1041 23 8 0 chr4 139042144 139042277 -16587843 - B1_Mus2 SINE Alu 0 147 14 4 1645 618 186 18 56 chr4 139042277 139042328 -16587792 - ID_B1 SINE B4 -1 223 52 4 1645 343 91 0 0 chr4 139042472 139042527 -16587593 + B1_Mur4 SINE Alu 96 150 0 4 1645 1732 83 66 16 chr4 139043669 139043927 -16586193 - Lx2A1 LINE L1 -2 7006 6736 4 1645 661 220 119 16 chr4 139044408 139044593 -16585527 + B4A SINE B4 44 247 -45 4 1645 270 214 57 75 chr4 139044623 139044729 -16585391 + B4 SINE B4 1 104 -188 4 1645 271 173 0 19 chr4 139044727 139044780 -16585340 + ID_B1 SINE B4 142 193 -31 4 1645 265 252 156 57 chr4 139049045 139049167 -16580953 - MIRb SINE MIR -91 177 40 4 1645 513 0 0 0 chr4 139050318 139050375 -16579745 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1645 721 119 0 8 chr4 139051019 139051138 -16578982 + B1_Mus1 SINE Alu 31 148 0 4 1645 1385 80 21 11 chr4 139051228 139051418 -16578702 + B2_Mm2 SINE B2 4 195 0 5 1645 202 133 0 0 chr4 139051509 139051539 -16578581 - MIRc SINE MIR -119 149 120 5 1645 318 247 0 47 chr4 139051850 139051935 -16578185 + PB1D10 SINE Alu 37 117 0 5 1645 228 373 50 8 chr4 139052253 139052372 -16577748 - MIR SINE MIR -122 140 17 5 1645 330 316 42 0 chr4 139052893 139052988 -16577132 - MLT1N2 LTR MaLR -326 236 138 5 1645 1164 43 7 14 chr4 139053141 139053283 -16576837 + B1_Mus1 SINE Alu 3 143 -5 5 1645 446 169 11 0 chr4 139053286 139053375 -16576745 + (CATA)n Simple_repeat Simple_repeat 2 91 0 5 1645 429 20 0 0 chr4 139053375 139053425 -16576695 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1645 712 240 0 20 chr4 139053428 139053581 -16576539 - B3A SINE B2 -47 151 2 5 1645 558 0 0 0 chr4 139054562 139054624 -16575496 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1645 306 0 0 0 chr4 139055515 139055549 -16574571 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1645 497 218 70 35 chr4 139056443 139056557 -16573563 - RSINE1 SINE B4 -2 163 46 6 1645 261 404 35 0 chr4 139057613 139057754 -16572366 + B4 SINE B4 1 146 -146 6 1645 723 236 58 53 chr4 139057744 139057950 -16572170 + B3 SINE B2 10 216 0 6 1645 297 297 0 0 chr4 139057973 139058047 -16572073 + ID_B1 SINE B4 151 224 0 6 1645 1067 122 0 0 chr4 139058550 139058698 -16571422 + B1_Mur3 SINE Alu 1 148 -1 6 1645 659 35 12 0 chr4 139058743 139058829 -16571291 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1645 409 141 6 2 chr4 139059018 139059096 -16571024 - PB1D10 SINE Alu -42 107 28 6 1645 521 262 98 35 chr4 139059098 139059272 -16570848 - MER2 DNA MER2_type -120 225 41 6 1645 820 145 7 28 chr4 139059314 139059605 -16570515 + (TG)n Simple_repeat Simple_repeat 1 285 0 6 1645 207 0 0 0 chr4 139059670 139059693 -16570427 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 7 1645 786 223 13 6 chr4 139059815 139059973 -16570147 - RSINE1 SINE B4 -4 161 3 7 1645 511 155 0 19 chr4 139060360 139060465 -16569655 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 7 1645 661 280 90 24 chr4 139060469 139060681 -16569439 - B4A SINE B4 0 292 67 7 1645 1001 106 14 0 chr4 139060758 139060900 -16569220 + B1_Mus1 SINE Alu 5 148 0 7 1645 375 127 0 16 chr4 139061511 139061575 -16568545 + B3A SINE B2 89 151 -47 7 1645 464 81 0 13 chr4 139061577 139061652 -16568468 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1645 21 0 0 0 chr4 139061671 139061692 -16568428 + AT_rich Low_complexity Low_complexity 1 21 0 7 1645 835 249 12 0 chr4 139061700 139061873 -16568247 + B3 SINE B2 3 177 -39 7 1645 860 202 51 21 chr4 139061898 139062088 -16568032 + B4 SINE B4 92 292 0 7 1645 365 194 125 58 chr4 139062135 139062239 -16567881 + PB1D10 SINE Alu 1 111 -6 8 1645 200 250 21 0 chr4 139062963 139063011 -16567109 - MIR SINE MIR -100 162 114 8 1645 453 262 231 6 chr4 139063061 139063230 -16566890 - B3 SINE B2 -8 208 2 8 1645 657 274 7 0 chr4 139063328 139063481 -16566639 - RSINE1 SINE B4 0 165 12 8 1645 309 152 63 0 chr4 139063503 139063582 -16566538 + CT-rich Low_complexity Low_complexity 4 87 0 8 1645 560 178 27 21 chr4 139063596 139063728 -16566392 - B1_Mus1 SINE Alu -13 136 2 8 1645 601 243 187 11 chr4 139063741 139063928 -16566192 - ID_B1 SINE B4 -2 222 3 8 1645 198 0 0 0 chr4 139063936 139063958 -16566162 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1645 581 199 59 0 chr4 139064150 139064286 -16565834 + ID_B1 SINE B4 81 224 0 8 1645 697 268 72 37 chr4 139064286 139064570 -16565550 + B4A SINE B4 2 292 0 8 1645 756 0 0 0 chr4 139065604 139065688 -16564432 + (GA)n Simple_repeat Simple_repeat 2 85 0 9 1645 315 0 0 0 chr4 139065958 139065993 -16564127 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 9 1645 219 261 108 0 chr4 139066010 139066075 -16564045 - B3A SINE B2 -125 73 2 9 1645 217 213 75 62 chr4 139066090 139066170 -16563950 - RSINE1 SINE B4 -7 158 78 9 1645 220 301 132 66 chr4 139066169 139066336 -16563784 - ID_B1 SINE B4 -5 219 42 9 1645 297 295 202 37 chr4 139066328 139066674 -16563446 + MLT1G3 LTR MaLR 207 584 -11 9 1645 1820 185 86 9 chr4 139066777 139067126 -16562994 + MTEa LTR MaLR 1 376 -3 9 1646 844 131 77 0 chr4 139069243 139069373 -16560747 - B1_Mus1 SINE Alu -8 140 1 9 1646 281 302 32 57 chr4 139069523 139069681 -16560439 + RMER15 LTR ERVL 1 154 -421 9 1646 443 232 185 56 chr4 139069753 139069931 -16560189 + RMER15 LTR ERVL 360 560 -15 9 1646 261 345 12 0 chr4 139070206 139070290 -16559830 + MLT1K LTR MaLR 163 247 -348 9 1646 1130 246 74 11 chr4 139070505 139070776 -16559344 - B4 SINE B4 -4 288 1 1 1646 365 255 25 43 chr4 139071323 139071453 -16558667 + MIR SINE MIR 46 177 -99 1 1646 718 184 0 11 chr4 139071716 139071897 -16558223 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1646 670 288 121 0 chr4 139071897 139072137 -16557983 - B4 SINE B4 -18 274 6 1 1646 531 0 0 0 chr4 139072176 139072235 -16557885 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1646 726 210 0 14 chr4 139072237 139072377 -16557743 - B3A SINE B2 -59 139 2 1 1646 420 171 114 0 chr4 139072383 139072471 -16557649 - PB1D7 SINE Alu 0 120 23 1 1646 188 220 51 0 chr4 139072503 139072562 -16557558 + CT-rich Low_complexity Low_complexity 4 65 0 1 1646 749 103 0 8 chr4 139072553 139072671 -16557449 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 1646 1137 45 15 0 chr4 139073002 139073136 -16556984 + B1_Mm SINE Alu 1 136 -11 1 1646 975 197 31 5 chr4 139073203 139073397 -16556723 - B3 SINE B2 -4 212 14 1 1646 327 49 0 0 chr4 139074486 139074527 -16555593 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1646 246 234 0 0 chr4 139075119 139075166 -16554954 - RSINE1 SINE B4 -81 84 38 1 1646 229 343 61 0 chr4 139076071 139076170 -16553950 - MER45A DNA Tip100 -23 155 51 1 1646 456 19 0 0 chr4 139076520 139076573 -16553547 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1646 735 270 29 10 chr4 139076580 139076786 -16553334 - ID_B1 SINE B4 -7 217 8 1 1646 621 192 249 0 chr4 139079659 139079836 -16550284 - ID_B1 SINE B4 -3 221 1 1 1646 297 167 0 0 chr4 139079845 139079899 -16550221 + C-rich Low_complexity Low_complexity 4 57 0 1 1646 422 254 23 23 chr4 139080266 139080395 -16549725 + BC1_Mm scRNA scRNA 1 129 -23 1 1646 780 125 0 0 chr4 139080452 139080580 -16549540 + (TCCC)n Simple_repeat Simple_repeat 1 128 0 1 1646 225 319 20 69 chr4 139081113 139081214 -16548906 + MIRm SINE MIR 86 181 -95 1 1646 546 301 65 69 chr4 139081247 139081522 -16548598 + B4 SINE B4 2 275 -17 1 1646 636 201 67 67 chr4 139082113 139082278 -16547842 + RSINE1 SINE B4 1 165 0 1 1646 249 287 154 12 chr4 139082785 139082954 -16547166 - L1ME1 LINE L1 -134 6045 5853 1 1646 258 30 0 0 chr4 139083325 139083339 -16546781 + (A)n Simple_repeat Simple_repeat 1 14 0 1 1646 1253 54 0 0 chr4 139083339 139083487 -16546633 + B1_Mus1 SINE Alu 1 148 0 1 1646 258 30 0 0 chr4 139083487 139083505 -16546615 + (A)n Simple_repeat Simple_repeat 1 18 0 1 1646 235 307 42 34 chr4 139083856 139083974 -16546146 - L1M4 LINE L1 -2099 4047 3929 1 1646 209 185 0 47 chr4 139083987 139084072 -16546048 + T-rich Low_complexity Low_complexity 1 81 0 1 1646 1192 112 65 0 chr4 139084165 139084335 -16545785 - B2_Mm2 SINE B2 -14 181 1 1 1646 336 214 83 0 chr4 139084402 139084486 -16545634 - B3 SINE B2 -118 98 8 1 1646 207 261 0 0 chr4 139084488 139084534 -16545586 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1646 386 224 97 48 chr4 139084598 139084701 -16545419 - PB1D10 SINE Alu -8 109 2 1 1646 800 94 181 0 chr4 139084756 139084883 -16545237 - B1_Mur4 SINE Alu 0 150 1 1 1646 841 194 138 6 chr4 139084940 139085121 -16544999 - B3 SINE B2 -11 205 1 1 1646 247 132 59 0 chr4 139085123 139085191 -16544929 - L1MEc LINE L1 -5343 1057 986 1 1646 417 283 26 9 chr4 139085198 139085312 -16544808 + PB1D10 SINE Alu 2 117 0 1 1646 304 108 43 35 chr4 139085316 139085431 -16544689 + A-rich Low_complexity Low_complexity 2 117 0 1 1646 322 310 0 41 chr4 139085597 139085718 -16544402 - MLT1A1 LTR MaLR -2 406 291 1 1646 898 243 0 37 chr4 139086052 139086251 -16543869 - ID_B1 SINE B4 -10 214 20 1 1646 3275 44 15 10 chr4 139086251 139086643 -16543477 + MTA_Mm LTR MaLR 1 394 -2 1 1646 898 243 0 37 chr4 139086643 139086661 -16543459 - ID SINE ID -205 19 5 1 1646 195 266 24 60 chr4 139086828 139086912 -16543208 - MIRb SINE MIR -1 267 187 1 1646 967 228 19 5 chr4 139086939 139087146 -16542974 + B3 SINE B2 1 210 -6 1 1646 321 325 101 6 chr4 139087161 139087319 -16542801 + LTR65 LTR ERV1 2 174 -495 1 1646 306 301 142 8 chr4 139087404 139087538 -16542582 + LTR65 LTR ERV1 297 448 -221 1 1646 257 342 0 0 chr4 139087847 139087926 -16542194 + C-rich Low_complexity Low_complexity 2 80 0 1 1646 417 186 62 0 chr4 139087926 139088023 -16542097 - PB1D10 SINE Alu -9 108 6 1 1646 250 204 0 55 chr4 139089209 139089469 -16540651 + CT-rich Low_complexity Low_complexity 1 245 0 1 1646 252 361 8 8 chr4 139089478 139089601 -16540519 + C-rich Low_complexity Low_complexity 4 126 0 1 1646 186 209 0 0 chr4 139089609 139089652 -16540468 + CT-rich Low_complexity Low_complexity 2 44 0 1 1646 228 35 0 0 chr4 139089978 139090007 -16540113 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1646 1177 82 0 0 chr4 139090009 139090155 -16539965 - B1_Mus2 SINE Alu -1 146 1 1 1646 231 308 13 0 chr4 139090576 139090654 -16539466 - ID4 SINE ID -4 79 1 1 1646 675 0 0 0 chr4 139090766 139090841 -16539279 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1646 501 313 76 9 chr4 139092456 139092649 -16537471 + MIR3 SINE MIR 9 202 -6 1 1646 216 0 0 0 chr4 139093032 139093056 -16537064 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1646 1531 213 79 54 chr4 139093205 139093612 -16536508 + MTD LTR MaLR 3 419 0 1 1646 2704 86 3 3 chr4 139093870 139094232 -16535888 + L1_Mus4 LINE L1 6269 6630 -6 1 1646 731 226 6 47 chr4 139094635 139094807 -16535313 - RSINE1 SINE B4 0 165 1 1 1646 405 296 199 36 chr4 139095256 139095723 -16534397 - L1MEf LINE L1 -3370 3012 2470 1 1646 828 229 29 146 chr4 139095724 139095785 -16534335 + B3 SINE B2 2 47 -169 1 1646 1206 54 7 0 chr4 139095785 139095932 -16534188 - B1_Mus1 SINE Alu 0 148 1 1 1646 828 229 29 146 chr4 139095932 139096110 -16534010 + B3 SINE B2 48 213 -3 1 1646 265 213 46 42 chr4 139096147 139096255 -16533865 - B1F SINE Alu -7 110 4 1 1646 1672 16 0 15 chr4 139096272 139096467 -16533653 - B2_Mm1a SINE B2 0 193 2 1 1646 1099 237 5 5 chr4 139096588 139096800 -16533320 - ID_B1 SINE B4 -11 213 2 1 1646 237 367 47 60 chr4 139096905 139096938 -16533182 - YREP_Mm Unknown Unknown -1469 343 277 1 1646 418 254 106 8 chr4 139096938 139097061 -16533059 + ID_B1 SINE B4 85 219 -5 1 1646 237 367 47 60 chr4 139097061 139097137 -16532983 - YREP_Mm Unknown Unknown -1469 276 115 1 1646 873 117 7 14 chr4 139097120 139097259 -16532861 + B1_Mus1 SINE Alu 11 148 0 1 1646 289 167 29 19 chr4 139097376 139097480 -16532640 + GA-rich Low_complexity Low_complexity 2 106 0 1 1646 234 344 15 53 chr4 139097651 139097783 -16532337 + L1M2 LINE L1 3362 3488 -2655 1 1646 344 295 74 0 chr4 139097811 139097933 -16532187 + B1F SINE Alu 18 148 -1 1 1646 628 199 79 22 chr4 139098238 139098377 -16531743 - B1_Mur3 SINE Alu -1 148 2 1 1646 311 261 92 7 chr4 139098377 139098518 -16531602 - L1MEf LINE L1 -4760 1718 1530 1 1646 279 359 53 16 chr4 139099317 139099350 -16530770 - B3A SINE B2 0 198 5 1 1646 688 244 32 13 chr4 139099350 139099504 -16530616 - RSINE1 SINE B4 -3 162 6 1 1646 312 70 0 0 chr4 139099627 139099670 -16530450 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 1 1646 683 183 0 80 chr4 139099673 139099810 -16530310 - B1_Mur2 SINE Alu -8 141 16 1 1646 606 205 26 0 chr4 139099952 139100069 -16530051 + PB1D9 SINE Alu 1 120 0 1 1646 342 151 0 0 chr4 139100171 139100244 -16529876 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1646 530 187 20 7 chr4 139100725 139100876 -16529244 + CT-rich Low_complexity Low_complexity 2 154 0 1 1646 377 304 0 29 chr4 139100949 139101054 -16529066 - PB1D10 SINE Alu -15 102 1 1 1646 755 176 6 0 chr4 139102325 139102484 -16527636 + (CA)n Simple_repeat Simple_repeat 2 161 0 1 1646 306 292 11 0 chr4 139102489 139102578 -16527542 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 1 1646 601 206 0 22 chr4 139102578 139102762 -16527358 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1646 273 296 78 49 chr4 139102924 139103066 -16527054 + MIRb SINE MIR 54 199 -69 1 1646 28 0 0 0 chr4 139103271 139103299 -16526821 + AT_rich Low_complexity Low_complexity 1 28 0 1 1646 1042 229 15 5 chr4 139103321 139103519 -16526601 + B3 SINE B2 1 200 -16 1 1646 549 0 0 0 chr4 139103526 139103587 -16526533 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 1 1646 810 123 0 0 chr4 139103589 139103711 -16526409 - B1_Mus2 SINE Alu -6 141 20 1 1646 432 286 0 28 chr4 139103711 139103733 -16526387 - ID_B1 SINE B4 -6 218 79 1 1646 460 264 0 28 chr4 139103764 139103873 -16526247 + PB1 SINE Alu 20 125 -2 1 1646 1165 128 26 41 chr4 139104042 139104237 -16525883 + B2_Mm2 SINE B2 1 192 -3 1 1646 759 92 0 0 chr4 139104971 139105080 -16525040 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 1 1646 270 246 0 0 chr4 139105239 139105300 -16524820 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1646 246 369 48 27 chr4 139105538 139105701 -16524419 - L2c LINE L2 -4 3383 3188 1 1646 209 234 21 0 chr4 139105871 139105918 -16524202 + CT-rich Low_complexity Low_complexity 1 48 0 1 1646 836 209 46 36 chr4 139105918 139106112 -16524008 - ID_B1 SINE B4 -24 200 5 1 1646 24 53 0 0 chr4 139106379 139106417 -16523703 + AT_rich Low_complexity Low_complexity 1 38 0 1 1646 315 255 29 180 chr4 139106425 139106597 -16523523 - RSINE1 SINE B4 -18 147 2 1 1646 500 339 89 22 chr4 139106840 139107142 -16522978 - L1M5 LINE L1 -525 5639 5319 1 1646 234 0 0 0 chr4 139107142 139107168 -16522952 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1646 500 276 67 12 chr4 139107168 139107270 -16522850 - L1M5 LINE L1 -828 5318 5210 1 1646 628 318 81 31 chr4 139107290 139107712 -16522408 - L2c LINE L2 -583 2836 2394 1 1646 218 248 300 9 chr4 139107868 139107978 -16522142 + RSINE1 SINE B4 18 159 -6 1 1646 687 193 50 7 chr4 139108563 139108704 -16521416 - RSINE1 SINE B4 -10 155 9 2 1646 1176 62 0 0 chr4 139108704 139108848 -16521272 - B1_Mus1 SINE Alu -3 145 2 2 1646 746 145 137 0 chr4 139108875 139109006 -16521114 + B1_Mur1 SINE Alu 1 149 0 2 1646 520 271 0 22 chr4 139109087 139109103 -16521017 + B3A SINE B2 25 40 -158 2 1646 1059 83 0 0 chr4 139109103 139109236 -16520884 + B1_Mm SINE Alu 2 134 -13 2 1646 520 271 0 22 chr4 139109236 139109355 -16520765 + B3A SINE B2 41 157 -41 2 1646 6098 150 41 40 chr4 139109414 139110640 -16519480 + RMER12 LTR ERVK 1 1227 -95 2 1646 352 315 39 71 chr4 139111668 139111822 -16518298 + B4 SINE B4 144 292 0 2 1646 276 30 0 0 chr4 139112092 139112125 -16517995 + (CTCG)n Simple_repeat Simple_repeat 1 33 0 2 1646 207 0 0 0 chr4 139112560 139112583 -16517537 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1646 367 228 34 0 chr4 139112765 139112914 -16517206 + (TCCA)n Simple_repeat Simple_repeat 3 156 0 2 1646 457 217 29 0 chr4 139112947 139113122 -16516998 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 2 1646 198 191 0 0 chr4 139113762 139113809 -16516311 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1646 562 202 198 23 chr4 139114261 139114438 -16515682 - B3 SINE B2 0 216 9 2 1646 1053 42 0 40 chr4 139114667 139114816 -16515304 + B1_Mus1 SINE Alu 6 148 0 2 1646 189 0 0 0 chr4 139114816 139114837 -16515283 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 1646 369 233 0 0 chr4 139114875 139114948 -16515172 + ID4 SINE ID 5 77 -6 2 1646 302 206 14 0 chr4 139115082 139115155 -16514965 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 2 1646 840 200 0 0 chr4 139115166 139115346 -16514774 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 2 1646 281 203 29 43 chr4 139115377 139115516 -16514604 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 2 1646 210 336 81 33 chr4 139115524 139115648 -16514472 - L2b LINE L2 -19 3407 3265 2 1646 549 144 0 0 chr4 139115754 139115844 -16514276 + ID_B1 SINE B4 115 204 -20 2 1646 375 23 0 0 chr4 139115850 139115894 -16514226 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 2 1646 390 238 28 37 chr4 139116081 139116190 -16513930 - RSINE1 SINE B4 0 165 58 2 1646 392 275 104 3 chr4 139116621 139116759 -16513361 + B1F1 SINE Alu 1 147 -1 2 1646 1469 11 11 0 chr4 139117326 139117500 -16512620 + (TCTCC)n Simple_repeat Simple_repeat 4 179 0 2 1646 463 144 0 43 chr4 139117500 139117616 -16512504 + CT-rich Low_complexity Low_complexity 4 114 0 2 1646 810 238 79 0 chr4 139117634 139117836 -16512284 - ID_B1 SINE B4 -2 222 5 2 1646 547 285 7 7 chr4 139118132 139118270 -16511850 - RSINE1 SINE B4 -26 139 2 2 1646 267 353 116 11 chr4 139118456 139118811 -16511309 - L2 LINE L2 -1739 1680 1289 2 1646 315 252 87 63 chr4 139119440 139119567 -16510553 + RLTR25B LTR ERVK 406 535 -493 2 1646 808 29 0 0 chr4 139119470 139119574 -16510546 + B1_Mm SINE Alu 43 146 -1 2 1646 390 319 110 26 chr4 139119906 139120170 -16509950 + B4 SINE B4 7 292 0 2 1646 644 232 6 0 chr4 139120174 139120351 -16509769 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1646 624 108 0 32 chr4 139120922 139121046 -16509074 + (TATG)n Simple_repeat Simple_repeat 3 122 0 2 1646 1070 216 5 14 chr4 139121046 139121262 -16508858 - B3 SINE B2 -2 214 1 2 1646 307 291 50 33 chr4 139121344 139121465 -16508655 - Lx8 LINE L1 -311 7162 7040 2 1646 756 321 13 13 chr4 139121553 139121777 -16508343 - Lx8 LINE L1 -451 7022 6799 2 1646 207 204 3 73 chr4 139122585 139122653 -16507467 + MIRc SINE MIR 99 166 -102 2 1646 203 286 41 30 chr4 139122654 139122769 -16507351 - L2b LINE L2 -383 3043 2927 2 1646 279 93 0 0 chr4 139122998 139123041 -16507079 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1646 233 304 43 0 chr4 139123077 139123146 -16506974 - B4A SINE B4 -1 291 220 2 1646 870 245 22 0 chr4 139123183 139123367 -16506753 - B3 SINE B2 0 216 29 2 1646 1148 68 0 13 chr4 139123369 139123518 -16506602 + B1_Mus1 SINE Alu 2 148 0 2 1646 297 100 0 0 chr4 139123518 139123568 -16506552 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1646 229 222 0 0 chr4 139123571 139123616 -16506504 - B3A SINE B2 -153 45 1 2 1646 425 335 140 4 chr4 139123616 139123816 -16506304 - B4A SINE B4 -61 231 1 2 1646 186 282 0 0 chr4 139123817 139123856 -16506264 - MIRc SINE MIR -117 151 113 2 1646 334 378 64 31 chr4 139124146 139124506 -16505614 + L1ME3A LINE L1 5518 5889 -284 2 1646 245 259 17 0 chr4 139124644 139124702 -16505418 + L1ME3 LINE L1 6094 6152 -10 2 1646 271 65 43 0 chr4 139124912 139124958 -16505162 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 2 1646 1256 54 0 0 chr4 139124967 139125115 -16505005 - B1_Mus1 SINE Alu 0 148 1 2 1646 596 272 54 0 chr4 139125204 139125351 -16504769 + RSINE1 SINE B4 2 156 -9 2 1646 323 239 91 0 chr4 139126134 139126222 -16503898 - MIR SINE MIR -82 180 85 2 1646 699 12 0 0 chr4 139126582 139126662 -16503458 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 2 1646 1485 58 21 0 chr4 139127267 139127455 -16502665 - B2_Mm1a SINE B2 0 193 2 2 1646 274 260 27 0 chr4 139127687 139127760 -16502360 - Charlie4a DNA MER1_type -3 505 431 2 1646 658 200 14 48 chr4 139127787 139127934 -16502186 + B1_Mur2 SINE Alu 8 149 0 2 1646 483 235 295 0 chr4 139127945 139128111 -16502009 + ID_B1 SINE B4 10 224 0 2 1646 493 170 42 21 chr4 139128016 139128112 -16502008 + PB1D10 SINE Alu 19 116 -1 2 1646 288 280 82 22 chr4 139128115 139128250 -16501870 - Charlie4a DNA MER1_type -70 438 296 2 1646 521 300 68 68 chr4 139128251 139128487 -16501633 + B4A SINE B4 1 236 -56 2 1646 219 36 0 0 chr4 139128521 139128549 -16501571 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1646 240 333 0 14 chr4 139128575 139128648 -16501472 + ID2 SINE ID 2 73 -10 2 1646 242 336 224 12 chr4 139128651 139128901 -16501219 - Charlie4a DNA MER1_type -203 305 3 2 1646 189 200 0 0 chr4 139129454 139129489 -16500631 + MIRc SINE MIR 121 155 -113 2 1646 30 45 0 0 chr4 139130762 139130806 -16499314 + GC_rich Low_complexity Low_complexity 1 44 0 2 1646 207 182 0 0 chr4 139130916 139130960 -16499160 + (CGG)n Simple_repeat Simple_repeat 2 45 0 2 1646 420 319 21 14 chr4 139131704 139131844 -16498276 - MIRb SINE MIR -70 198 58 2 1646 209 216 19 19 chr4 139133322 139133374 -16496746 + MIR3 SINE MIR 104 155 -53 2 1646 809 205 12 12 chr4 139133458 139133621 -16496499 + RSINE1 SINE B4 3 165 0 2 1646 540 75 37 40 chr4 139133745 139133864 -16496256 + MT-int LTR MaLR 921 1025 -73 2 1646 21 0 0 0 chr4 139134081 139134102 -16496018 + AT_rich Low_complexity Low_complexity 1 21 0 2 1646 296 175 95 0 chr4 139136444 139136507 -16493613 + MIRb SINE MIR 59 127 -141 2 1646 180 0 0 0 chr4 139137102 139137122 -16492998 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 2 1646 292 279 0 0 chr4 139137877 139137945 -16492175 + MIRc SINE MIR 83 150 -118 2 1646 595 231 23 0 chr4 139137972 139138102 -16492018 + B1F1 SINE Alu 17 149 0 2 1646 243 0 0 0 chr4 139138757 139138784 -16491336 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 2 1646 438 229 0 107 chr4 139138784 139138906 -16491214 + B1F SINE Alu 33 141 -8 2 1646 261 365 20 7 chr4 139139760 139139906 -16490214 - MIR SINE MIR -6 256 109 2 1646 220 339 103 9 chr4 139141027 139141143 -16488977 - L2c LINE L2 -228 3159 3033 2 1646 332 233 0 8 chr4 139141446 139141567 -16488553 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1646 397 225 17 0 chr4 139141598 139141718 -16488402 + (TG)n Simple_repeat Simple_repeat 2 123 0 2 1646 775 241 97 5 chr4 139142072 139142268 -16487852 - ID_B1 SINE B4 -6 218 5 2 1646 3487 28 0 8 chr4 139144563 139144962 -16485158 - MTA_Mm LTR MaLR 0 396 1 2 1646 1062 133 0 0 chr4 139145034 139145207 -16484913 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 2 1646 828 0 0 0 chr4 139145207 139145298 -16484822 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 2 1646 201 288 49 12 chr4 139145399 139145480 -16484640 - MIR SINE MIR -90 118 35 2 1646 237 377 21 42 chr4 139146028 139146172 -16483948 - MIRc SINE MIR -64 204 64 2 1646 214 182 0 0 chr4 139146752 139146796 -16483324 - MIR SINE MIR -93 115 72 2 1646 205 349 0 15 chr4 139146841 139146908 -16483212 - L2c LINE L2 -2 3385 3320 2 1646 361 263 18 32 chr4 139146990 139147144 -16482976 - MIRb SINE MIR -89 187 36 2 1646 914 278 29 25 chr4 139147304 139147584 -16482536 + B4 SINE B4 9 289 -3 2 1646 315 344 10 0 chr4 139147618 139147714 -16482406 - RMER12 LTR ERVK -476 846 750 2 1646 181 365 47 0 chr4 139148080 139148165 -16481955 + MIR SINE MIR 84 172 -90 2 1646 243 0 0 0 chr4 139148874 139148901 -16481219 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1646 341 146 0 0 chr4 139149419 139149474 -16480646 + URR1B DNA MER1_type 171 225 0 2 1646 228 305 61 87 chr4 139150477 139150707 -16479413 + MIRb SINE MIR 18 241 -27 2 1646 771 191 15 0 chr4 139151176 139151312 -16478808 - B1_Mur2 SINE Alu -9 140 3 2 1646 199 250 0 6 chr4 139151801 139151854 -16478266 - MIR SINE MIR -83 125 74 2 1646 236 234 47 0 chr4 139152058 139152122 -16477998 - MIRc SINE MIR -141 127 61 2 1646 716 243 53 29 chr4 139152541 139152749 -16477371 - ID_B1 SINE B4 -11 213 1 2 1646 235 289 69 40 chr4 139152772 139152873 -16477247 - MIR SINE MIR -69 139 36 2 1646 600 14 0 0 chr4 139155596 139155665 -16474455 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1646 223 189 337 31 chr4 139155752 139155850 -16474270 + RSINE1 SINE B4 3 130 -35 2 1646 332 330 21 42 chr4 139156949 139157100 -16473020 + MIRb SINE MIR 3 159 -109 2 1646 1177 35 21 14 chr4 139157110 139157255 -16472865 + B1_Mus2 SINE Alu 2 147 0 2 1646 192 159 65 43 chr4 139157811 139157857 -16472263 + MIR SINE MIR 80 126 -136 3 1646 197 284 92 26 chr4 139158653 139158729 -16471391 + MIRc SINE MIR 83 163 -105 3 1646 21 0 0 0 chr4 139159491 139159512 -16470608 + AT_rich Low_complexity Low_complexity 1 21 0 3 1646 487 286 43 0 chr4 139159512 139159652 -16470468 + ID_B1 SINE B4 79 224 0 3 1646 27 29 0 0 chr4 139159743 139159777 -16470343 + AT_rich Low_complexity Low_complexity 1 34 0 3 1646 1005 159 0 0 chr4 139159790 139159935 -16470185 + B1_Mur4 SINE Alu 1 145 -5 3 1646 204 40 0 0 chr4 139159940 139159965 -16470155 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 1646 341 231 124 117 chr4 139160017 139160154 -16469966 + ID_B1 SINE B4 18 155 -69 3 1646 803 135 24 0 chr4 139160156 139160282 -16469838 + B1_Mus1 SINE Alu 1 129 -19 3 1646 237 159 0 0 chr4 139160283 139160327 -16469793 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1646 279 0 0 0 chr4 139161742 139161773 -16468347 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1646 243 0 0 0 chr4 139163738 139163765 -16466355 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1646 387 0 0 0 chr4 139163765 139163807 -16466313 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1646 782 254 16 6 chr4 139163826 139164008 -16466112 - B4 SINE B4 -23 269 86 3 1646 514 115 22 33 chr4 139163998 139164088 -16466032 - B1_Mur4 SINE Alu -61 89 1 3 1646 328 256 0 47 chr4 139164099 139164185 -16465935 - ID2 SINE ID -1 82 1 3 1646 202 232 0 47 chr4 139164190 139164235 -16465885 + T-rich Low_complexity Low_complexity 43 84 0 3 1646 1052 176 22 77 chr4 139164235 139164457 -16465663 - B3 SINE B2 -6 210 1 3 1646 225 208 0 21 chr4 139164457 139164507 -16465613 + T-rich Low_complexity Low_complexity 1 48 0 3 1646 908 241 46 5 chr4 139164510 139164706 -16465414 - B3 SINE B2 -9 207 4 3 1646 899 130 0 0 chr4 139164713 139164851 -16465269 - B1_Mus2 SINE Alu 0 147 10 3 1646 516 136 6 105 chr4 139164904 139165085 -16465035 - RMER17C LTR ERVK -134 276 114 3 1646 565 171 9 18 chr4 139165711 139165937 -16464183 + (TG)n Simple_repeat Simple_repeat 1 224 0 3 1646 229 259 19 0 chr4 139165940 139165994 -16464126 + MER63D DNA AcHobo 297 351 -710 3 1646 798 211 94 6 chr4 139166627 139166808 -16463312 - ID_B1 SINE B4 -1 223 27 3 1646 240 186 0 0 chr4 139167338 139167397 -16462723 + C-rich Low_complexity Low_complexity 1 59 0 3 1646 181 0 33 33 chr4 139167826 139167856 -16462264 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 3 1646 874 177 184 22 chr4 139168031 139168216 -16461904 + B3 SINE B2 2 216 0 3 1646 218 154 0 0 chr4 139168259 139168298 -16461822 + PB1D10 SINE Alu 1 39 -78 3 1646 597 168 20 17 chr4 139168295 139168434 -16461686 - PB1D9 SINE Alu -5 145 9 3 1646 234 281 0 30 chr4 139168624 139168690 -16461430 + MIRb SINE MIR 115 178 -90 3 1646 221 250 71 20 chr4 139168722 139168820 -16461300 + MIRb SINE MIR 41 143 -125 3 1646 1406 82 11 5 chr4 139168975 139169160 -16460960 - B2_Mm2 SINE B2 -9 186 1 3 1646 806 248 39 5 chr4 139169170 139169373 -16460747 - B3 SINE B2 -5 211 2 3 1646 546 240 70 0 chr4 139169380 139169509 -16460611 - B1F SINE Alu -7 142 5 3 1646 183 357 82 0 chr4 139170186 139170284 -16459836 + MIRb SINE MIR 127 232 -36 3 1646 181 322 17 0 chr4 139170356 139170415 -16459705 - MIRc SINE MIR -127 141 82 3 1646 1276 206 115 25 chr4 139171263 139171603 -16458517 - MTD LTR MaLR -1 420 68 3 1646 1151 76 0 7 chr4 139171603 139171749 -16458371 - B1_Mm SINE Alu 0 147 3 3 1646 1268 228 57 72 chr4 139171749 139171796 -16458324 - MTD LTR MaLR -339 82 39 3 1646 248 265 0 0 chr4 139172078 139172127 -16457993 - ID4 SINE ID -11 72 24 3 1646 207 95 23 45 chr4 139172986 139173030 -16457090 + A-rich Low_complexity Low_complexity 2 44 0 3 1646 180 0 0 0 chr4 139173230 139173250 -16456870 + (GGGTG)n Simple_repeat Simple_repeat 4 23 0 3 1646 214 175 31 16 chr4 139174158 139174222 -16455898 + T-rich Low_complexity Low_complexity 4 68 0 3 1646 414 0 0 0 chr4 139175072 139175118 -16455002 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1646 524 164 267 0 chr4 139176426 139176542 -16453578 + B1_Mur4 SINE Alu 2 148 -2 3 1646 200 259 19 0 chr4 139176944 139176998 -16453122 - MIRb SINE MIR -98 170 116 3 1646 457 158 0 208 chr4 139177006 139177086 -16453034 + MTD LTR MaLR 7 62 -359 3 1646 1293 89 15 26 chr4 139177086 139177281 -16452839 + B2_Mm2 SINE B2 3 195 0 3 1646 457 158 0 208 chr4 139177281 139177344 -16452776 + MTD LTR MaLR 63 120 -301 3 1646 804 181 72 0 chr4 139177415 139177553 -16452567 - B1_Mus1 SINE Alu 0 148 1 3 1646 771 167 267 5 chr4 139177569 139177786 -16452334 + MTD LTR MaLR 116 389 -30 3 1646 889 131 34 14 chr4 139177881 139178028 -16452092 + B1_Mur4 SINE Alu 1 150 0 3 1646 210 246 0 0 chr4 139178035 139178096 -16452024 + A-rich Low_complexity Low_complexity 1 61 0 3 1646 180 0 0 0 chr4 139178584 139178604 -16451516 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1646 1116 111 168 5 chr4 139179295 139179486 -16450634 - URR1A DNA MER1_type 0 226 5 3 1646 475 153 30 10 chr4 139179827 139179926 -16450194 + B1_Mur3 SINE Alu 39 139 -10 3 1646 288 0 0 0 chr4 139179926 139179958 -16450162 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1646 270 191 231 22 chr4 139181092 139181183 -16448937 - PB1D9 SINE Alu 0 120 11 3 1646 1005 129 13 13 chr4 139181196 139181345 -16448775 - B1_Mur3 SINE Alu 0 149 1 3 1646 476 263 139 104 chr4 139181825 139182105 -16448015 - B4A SINE B4 -1 291 2 3 1646 285 216 53 61 chr4 139182137 139182283 -16447837 + B3A SINE B2 4 216 0 3 1646 704 187 112 0 chr4 139182310 139182444 -16447676 + B1_Mur4 SINE Alu 2 150 0 3 1646 1422 73 17 0 chr4 139182852 139183030 -16447090 + B2_Mm2 SINE B2 1 181 -14 3 1646 860 68 0 0 chr4 139183242 139183360 -16446760 - B1_Mm SINE Alu -1 146 29 3 1646 196 294 0 123 chr4 139183403 139183558 -16446562 + MIRc SINE MIR 58 197 -71 3 1646 546 216 9 9 chr4 139183973 139184085 -16446035 - PB1D10 SINE Alu -5 112 1 3 1646 285 299 23 93 chr4 139184207 139184336 -16445784 + MT2B LTR ERVL 121 240 -361 3 1646 478 224 11 8 chr4 139184257 139184378 -16445742 + B1_Mus2 SINE Alu 5 126 -23 3 1646 193 244 7 28 chr4 139184582 139184654 -16445466 + MIRc SINE MIR 110 178 -84 3 1646 1064 257 81 70 chr4 139184658 139185030 -16445090 + MTE2a LTR MaLR 4 379 0 3 1646 601 271 21 28 chr4 139185700 139185844 -16444276 + RSINE1 SINE B4 2 144 -21 3 1646 513 47 0 0 chr4 139186584 139186648 -16443472 + (TGAA)n Simple_repeat Simple_repeat 4 67 0 3 1646 248 268 43 147 chr4 139186726 139186743 -16443377 - CYRA11_Mm Unknown Y-chromosome -295 322 268 3 1646 659 152 7 132 chr4 139186743 139186787 -16443333 + URR1B DNA MER1_type 93 133 -92 3 1646 1649 42 0 0 chr4 139186787 139186979 -16443141 + B2_Mm1a SINE B2 1 192 -1 3 1646 659 152 7 132 chr4 139186979 139187086 -16443034 + URR1B DNA MER1_type 134 225 0 3 1646 248 268 43 147 chr4 139187086 139187101 -16443019 - CYRA11_Mm Unknown Y-chromosome -350 267 158 3 1646 973 128 170 5 chr4 139188582 139188770 -16441350 - URR1A DNA MER1_type -7 219 1 3 1646 203 375 125 0 chr4 139189378 139189522 -16440598 - MIRb SINE MIR -85 183 22 3 1646 571 171 16 24 chr4 139190262 139190388 -16439732 - RSINE1 SINE B4 -37 128 4 3 1646 290 140 0 34 chr4 139190902 139190961 -16439159 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 3 1646 210 275 14 14 chr4 139191503 139191573 -16438547 - L2b LINE L2 -1 3374 3305 3 1646 402 21 0 0 chr4 139193396 139193443 -16436677 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1646 21 0 0 0 chr4 139196751 139196772 -16433348 + GC_rich Low_complexity Low_complexity 1 21 0 3 1646 281 358 79 7 chr4 139197015 139197167 -16432953 + MER103 DNA DNA 3 165 -1 3 1646 21 0 0 0 chr4 139197688 139197709 -16432411 + GC_rich Low_complexity Low_complexity 1 21 0 3 1646 202 213 0 0 chr4 139198384 139198431 -16431689 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 3 1647 308 278 25 31 chr4 139198963 139199126 -16430994 + (CA)n Simple_repeat Simple_repeat 1 162 0 3 1647 225 94 0 0 chr4 139199230 139199262 -16430858 + (CGGGG)n Simple_repeat Simple_repeat 2 33 0 3 1647 216 0 0 0 chr4 139201410 139201434 -16428686 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1647 180 0 0 0 chr4 139201434 139201453 -16428667 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1647 388 324 236 48 chr4 139201457 139201919 -16428201 - L1MA6 LINE L1 -143 6157 5590 3 1647 1202 62 0 0 chr4 139201919 139202063 -16428057 - B1_Mus1 SINE Alu -4 144 1 3 1647 358 336 142 51 chr4 139202063 139202138 -16427982 - L1MA6 LINE L1 -692 5599 5527 3 1647 431 288 43 28 chr4 139202171 139202382 -16427738 - L1MA6 LINE L1 -3613 2530 2317 3 1647 944 150 14 0 chr4 139202468 139202608 -16427512 + B1_Mur1 SINE Alu 4 145 -4 3 1647 758 265 6 0 chr4 139202623 139202785 -16427335 - RSINE1 SINE B4 0 165 3 3 1647 222 37 0 0 chr4 139202795 139202822 -16427298 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 3 1647 784 98 0 0 chr4 139202822 139202934 -16427186 - B1_Mur1 SINE Alu -13 136 25 3 1647 634 245 37 4 chr4 139202940 139203143 -16426977 - B3A SINE B2 -4 212 3 3 1647 24 32 0 0 chr4 139203194 139203225 -16426895 + AT_rich Low_complexity Low_complexity 1 31 0 3 1647 227 188 0 40 chr4 139203239 139203289 -16426831 - B2_Mm2 SINE B2 -100 95 48 3 1647 1264 119 11 0 chr4 139203374 139203551 -16426569 - B2_Mm1t SINE B2 -14 179 1 3 1647 301 132 0 0 chr4 139203551 139203604 -16426516 - L1M2 LINE L1 -3966 2177 2125 3 1647 314 263 34 0 chr4 139205494 139205598 -16424522 + MLT2D LTR ERVL 1 107 -290 3 1647 353 301 106 64 chr4 139205600 139205788 -16424332 - B3A SINE B2 -2 196 1 4 1647 390 240 77 0 chr4 139205795 139205899 -16424221 - PB1D10 SINE Alu -5 112 1 4 1647 217 256 190 12 chr4 139206131 139206248 -16423872 - MIR3 SINE MIR -91 177 44 4 1647 238 273 26 13 chr4 139206495 139206573 -16423547 - ID2 SINE ID -3 80 2 4 1647 522 271 71 26 chr4 139207256 139207411 -16422709 + RSINE1 SINE B4 4 165 0 4 1647 675 0 0 0 chr4 139208023 139208098 -16422022 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1647 237 158 105 0 chr4 139208098 139208155 -16421965 - B1F SINE Alu -12 137 75 4 1647 258 300 90 9 chr4 139208274 139208313 -16421807 - MTD LTR MaLR -14 405 363 4 1647 1200 85 106 22 chr4 139208313 139208493 -16421627 - B2_Mm2 SINE B2 0 195 1 4 1647 258 300 90 9 chr4 139208493 139208564 -16421556 - MTD LTR MaLR -57 362 286 4 1647 514 179 108 31 chr4 139208556 139208701 -16421419 - MTD LTR MaLR -246 161 2 4 1647 186 43 0 0 chr4 139208948 139208971 -16421149 + (GGGGA)n Simple_repeat Simple_repeat 3 25 0 4 1647 285 197 0 0 chr4 139210290 139210366 -16419754 + GA-rich Low_complexity Low_complexity 2 77 0 4 1647 197 256 0 12 chr4 139210577 139210660 -16419460 + (TGG)n Simple_repeat Simple_repeat 1 82 0 4 1647 423 351 26 36 chr4 139210691 139210883 -16419237 - HAL1-2a_MD LINE L1 -509 2515 2326 4 1647 180 77 0 0 chr4 139210883 139210909 -16419211 + (TGG)n Simple_repeat Simple_repeat 2 27 0 4 1647 341 305 96 23 chr4 139211532 139211757 -16418363 + MIRb SINE MIR 13 260 -2 4 1647 209 177 0 23 chr4 139211813 139211862 -16418258 + L2a LINE L2 3310 3402 -24 4 1647 789 233 152 93 chr4 139211873 139212143 -16417977 + B4A SINE B4 1 286 -6 4 1647 321 197 0 0 chr4 139212169 139212235 -16417885 + (CATA)n Simple_repeat Simple_repeat 4 69 0 4 1647 1202 29 0 0 chr4 139212296 139212432 -16417688 - B1_Mus1 SINE Alu -12 136 1 4 1647 572 270 14 7 chr4 139212489 139212627 -16417493 - RSINE1 SINE B4 -17 148 10 4 1647 518 325 109 29 chr4 139212865 139213062 -16417058 - L2a LINE L2 0 3426 3229 4 1647 994 157 7 0 chr4 139213062 139213209 -16416911 + B1_Mur3 SINE Alu 2 149 0 4 1647 518 325 109 29 chr4 139213209 139213360 -16416760 - L2a LINE L2 -198 3228 3050 4 1647 3573 20 2 0 chr4 139213570 139213965 -16416155 + MTA_Mm LTR MaLR 1 396 0 4 1647 1752 163 44 44 chr4 139213987 139214353 -16415767 - RLTR18 LTR ERVK -44 572 207 4 1647 2136 113 89 14 chr4 139214306 139214665 -16415455 - ORR1B1 LTR MaLR -8 386 1 4 1647 1085 155 63 115 chr4 139214665 139214934 -16415186 - RLTR18 LTR ERVK -361 255 1 4 1647 716 253 86 14 chr4 139216513 139216733 -16413387 + B4A SINE B4 35 270 -22 4 1647 1277 151 19 19 chr4 139217349 139217565 -16412555 - B3 SINE B2 0 216 1 4 1647 275 328 21 36 chr4 139217650 139217774 -16412346 - MIR SINE MIR -133 135 11 4 1647 1404 251 51 0 chr4 139218350 139218684 -16411436 - MTEb LTR MaLR -28 351 1 4 1647 342 297 0 11 chr4 139218694 139218786 -16411334 - MIR SINE MIR -107 155 65 4 1647 250 315 128 27 chr4 139218908 139219121 -16410999 - MLT1C LTR MaLR -90 377 127 4 1647 796 166 12 0 chr4 139219131 139219294 -16410826 + (TA)n Simple_repeat Simple_repeat 2 166 0 4 1647 245 357 28 59 chr4 139219376 139219564 -16410556 - LTR16E2 LTR ERVL -40 528 315 4 1647 299 304 14 0 chr4 139220248 139220317 -16409803 - ID SINE ID -146 78 9 4 1647 184 122 0 47 chr4 139220337 139220380 -16409740 + CT-rich Low_complexity Low_complexity 4 44 0 4 1647 658 254 181 0 chr4 139220383 139220560 -16409560 - ID_B1 SINE B4 -14 210 2 4 1647 327 148 0 0 chr4 139220591 139220645 -16409475 - B3A SINE B2 -142 56 3 4 1647 304 287 29 87 chr4 139220646 139220852 -16409268 - L1M4 LINE L1 -3315 2831 2638 4 1647 581 223 45 58 chr4 139220939 139221163 -16408957 - L1M4 LINE L1 -3483 2663 2443 4 1647 914 286 42 28 chr4 139221509 139221793 -16408327 - B4 SINE B4 0 292 5 4 1647 662 273 0 19 chr4 139222095 139222252 -16407868 - RSINE1 SINE B4 0 165 12 4 1647 987 287 73 7 chr4 139223996 139224210 -16405910 + B4 SINE B4 1 217 -75 4 1647 699 54 0 0 chr4 139224210 139224302 -16405818 + (GGAA)n Simple_repeat Simple_repeat 3 94 0 4 1647 987 287 73 7 chr4 139224302 139224361 -16405759 + B4 SINE B4 218 291 -1 4 1647 180 0 0 0 chr4 139224415 139224435 -16405685 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1647 217 274 43 121 chr4 139224512 139224628 -16405492 + MIRb SINE MIR 46 152 -116 4 1647 268 289 96 0 chr4 139226228 139226332 -16403788 + MIRc SINE MIR 44 157 -111 4 1647 204 125 0 0 chr4 139226954 139226986 -16403134 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1647 444 318 123 0 chr4 139227002 139227181 -16402939 - B4 SINE B4 -4 288 88 4 1647 1124 180 85 19 chr4 139227181 139227441 -16402679 + ORR1D1 LTR MaLR 1 277 -97 4 1647 759 221 102 5 chr4 139227471 139227667 -16402453 - B3 SINE B2 0 216 2 4 1647 674 82 0 10 chr4 139227931 139228030 -16402090 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 4 1647 270 173 13 26 chr4 139228032 139228109 -16402011 + CT-rich Low_complexity Low_complexity 1 76 0 4 1647 554 133 105 17 chr4 139228118 139228239 -16401881 - B1_Mur4 SINE Alu -1 149 29 4 1647 419 146 35 28 chr4 139228746 139228887 -16401233 + (TG)n Simple_repeat Simple_repeat 1 142 0 4 1647 275 154 85 32 chr4 139228905 139228999 -16401121 + (GTGTG)n Simple_repeat Simple_repeat 2 100 0 4 1647 699 243 159 39 chr4 139229003 139229260 -16400860 - B4 SINE B4 0 292 5 4 1647 299 293 0 0 chr4 139229560 139229635 -16400485 + MLT1K LTR MaLR 203 277 -318 4 1647 1080 65 26 0 chr4 139230148 139230301 -16399819 + B2_Mm2 SINE B2 2 158 -37 4 1647 305 47 23 0 chr4 139230308 139230351 -16399769 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 4 1647 181 290 101 68 chr4 139230535 139230683 -16399437 - L2c LINE L2 -158 3229 3077 4 1647 435 107 0 0 chr4 139230693 139230768 -16399352 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1647 228 327 27 0 chr4 139230920 139231030 -16399090 + GA-rich Low_complexity Low_complexity 3 115 0 4 1647 2932 138 5 0 chr4 139232474 139232893 -16397227 - MTC LTR MaLR 0 421 1 4 1647 325 117 16 16 chr4 139233606 139233667 -16396453 + ORR1C2-int LTR MaLR 1310 1370 0 4 1647 2505 128 46 0 chr4 139233667 139234034 -16396086 + ORR1C2 LTR MaLR 1 384 0 4 1647 5313 203 100 28 chr4 139234040 139235312 -16394808 + ORR1C2-int LTR MaLR 7 1370 0 4 1647 2388 137 55 0 chr4 139235312 139235676 -16394444 + ORR1C2 LTR MaLR 1 384 0 4 1647 26 30 0 0 chr4 139235868 139235901 -16394219 + AT_rich Low_complexity Low_complexity 1 33 0 4 1647 349 317 0 16 chr4 139235901 139236023 -16394097 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 4 1647 218 366 12 58 chr4 139236024 139236066 -16394054 - RSINE1 SINE B4 0 165 125 4 1647 357 24 0 0 chr4 139236066 139236108 -16394012 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1647 218 366 12 58 chr4 139236108 139236124 -16393996 - RSINE1 SINE B4 -41 124 109 4 1647 2214 155 74 0 chr4 139236124 139236491 -16393629 + ORR1B1 LTR MaLR 1 394 0 4 1647 218 366 12 58 chr4 139236491 139236602 -16393518 - RSINE1 SINE B4 -57 108 3 4 1647 1154 227 102 3 chr4 139237197 139237480 -16392640 - ORR1D2 LTR MaLR -5 365 55 4 1647 405 312 62 6 chr4 139237625 139237802 -16392318 - HAL1-2a_MD LINE L1 -493 2531 2345 4 1647 2194 149 12 9 chr4 139237802 139238147 -16391973 + ORR1A1 LTR MaLR 1 346 0 4 1647 4734 135 72 71 chr4 139238200 139238966 -16391154 + RMER19B LTR ERVK 1 754 -148 4 1647 270 0 0 0 chr4 139238966 139238996 -16391124 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1647 4734 135 72 71 chr4 139238996 139239130 -16390990 + RMER19B LTR ERVK 755 902 0 4 1647 253 167 0 0 chr4 139239131 139239179 -16390941 - Lx8 LINE L1 -10 7463 7416 4 1647 500 255 27 54 chr4 139239367 139239516 -16390604 - MTEa LTR MaLR 0 379 235 4 1647 416 250 100 0 chr4 139240117 139240255 -16389865 - MTEa LTR MaLR -222 157 1 4 1647 243 346 0 18 chr4 139241127 139241236 -16388884 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 1647 430 257 115 26 chr4 139241284 139241403 -16388717 + B3A SINE B2 22 157 -41 4 1647 261 0 0 0 chr4 139241403 139241432 -16388688 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4 1647 430 257 115 26 chr4 139241432 139241468 -16388652 + B3A SINE B2 158 191 -7 4 1647 192 326 21 52 chr4 139241708 139241805 -16388315 - MIR SINE MIR -55 153 60 4 1647 183 93 70 0 chr4 139242103 139242146 -16387974 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1647 610 89 58 23 chr4 139242184 139242357 -16387763 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1647 327 151 71 0 chr4 139242372 139242498 -16387622 + (TG)n Simple_repeat Simple_repeat 1 135 0 4 1647 406 273 9 0 chr4 139242568 139242678 -16387442 + PB1D10 SINE Alu 1 111 -6 4 1647 616 259 112 41 chr4 139243853 139244050 -16386070 - ID_B1 SINE B4 0 224 14 4 1647 189 230 33 45 chr4 139245154 139245243 -16384877 - MIR SINE MIR -116 146 65 4 1647 495 262 8 0 chr4 139245404 139245526 -16384594 + MIR SINE MIR 30 152 -110 4 1647 503 321 25 6 chr4 139246150 139246310 -16383810 - RSINE1 SINE B4 0 165 3 4 1647 251 304 117 15 chr4 139246333 139246470 -16383650 - MIR3 SINE MIR -20 188 38 4 1647 216 353 113 56 chr4 139246931 139247622 -16382498 + L2a LINE L2 2674 3408 -18 4 1647 268 217 33 0 chr4 139247719 139247779 -16382341 + RMER15 LTR ERVL 424 485 -90 4 1647 265 333 50 4 chr4 139247990 139248132 -16381988 - MIRb SINE MIR -95 173 31 4 1647 279 261 32 56 chr4 139248499 139248625 -16381495 - MIRm SINE MIR -145 131 3 4 1647 270 0 0 0 chr4 139248698 139248728 -16381392 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1647 227 284 55 73 chr4 139249057 139249167 -16380953 + MIRb SINE MIR 21 128 -140 4 1647 327 104 0 0 chr4 139250210 139250258 -16379862 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 4 1647 1083 171 18 36 chr4 139252735 139252954 -16377166 + URR1B DNA MER1_type 1 215 -10 4 1647 1314 52 0 0 chr4 139253035 139253265 -16376855 + (CA)n Simple_repeat Simple_repeat 1 230 0 4 1647 351 0 0 0 chr4 139253265 139253303 -16376817 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1647 216 135 0 0 chr4 139254404 139254441 -16375679 + MIRc SINE MIR 110 146 -122 4 1647 424 226 59 25 chr4 139255227 139255345 -16374775 + B1F SINE Alu 25 146 -3 4 1647 815 164 0 14 chr4 139255778 139255920 -16374200 - B1_Mus1 SINE Alu -1 147 8 4 1647 1904 179 53 6 chr4 139257593 139257976 -16372144 - MTD LTR MaLR -14 405 18 4 1647 900 43 0 0 chr4 139257984 139258101 -16372019 + (CCAA)n Simple_repeat Simple_repeat 2 118 0 5 1647 456 229 0 0 chr4 139258210 139258350 -16371770 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 1647 718 249 133 66 chr4 139258356 139258627 -16371493 - B4A SINE B4 -2 290 2 5 1647 1151 62 7 20 chr4 139259341 139259489 -16370631 + B1_Mm SINE Alu 2 147 0 5 1647 397 230 243 7 chr4 139259502 139259638 -16370482 - B3 SINE B2 -3 213 46 5 1647 1233 48 0 0 chr4 139259722 139259869 -16370251 + B1_Mus1 SINE Alu 1 147 -1 5 1647 927 0 0 0 chr4 139259879 139259982 -16370138 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1647 1271 170 92 11 chr4 139260062 139260335 -16369785 + MTD LTR MaLR 119 413 -6 5 1647 720 166 110 22 chr4 139260336 139260472 -16369648 + B1_Mus1 SINE Alu 1 148 0 5 1647 306 0 0 0 chr4 139260482 139260516 -16369604 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 5 1647 180 0 0 0 chr4 139260578 139260598 -16369522 + (CAGAGA)n Simple_repeat Simple_repeat 2 21 0 5 1647 188 364 45 0 chr4 139260659 139260725 -16369395 - MIR3 SINE MIR -54 154 86 5 1647 460 236 17 52 chr4 139261572 139261688 -16368432 - PB1D10 SINE Alu -5 112 1 5 1647 825 218 11 22 chr4 139261688 139261771 -16368349 - ID SINE ID -143 81 1 5 1647 352 280 29 20 chr4 139262460 139262562 -16367558 + PB1D10 SINE Alu 12 114 -3 5 1647 286 289 0 0 chr4 139262590 139262673 -16367447 + ID4 SINE ID 1 83 0 5 1647 288 247 3 1 chr4 139262963 139263037 -16367083 + PB1D10 SINE Alu 8 82 -66 5 1647 1011 175 16 16 chr4 139263178 139263370 -16366750 - B2_Mm2 SINE B2 -3 192 1 5 1647 582 112 92 0 chr4 139264107 139264205 -16365915 - B1_Mur4 SINE Alu 0 150 44 5 1647 242 322 23 0 chr4 139264667 139264754 -16365366 + L2a LINE L2 3295 3383 -43 5 1647 658 293 75 19 chr4 139264883 139265081 -16365039 + ID_B1 SINE B4 1 211 -13 5 1647 195 69 0 0 chr4 139265081 139265110 -16365010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1647 658 293 75 19 chr4 139265110 139265123 -16364997 + ID_B1 SINE B4 212 224 0 5 1647 652 242 0 0 chr4 139265126 139265254 -16364866 + B1_Mur2 SINE Alu 10 137 -12 5 1647 1105 41 6 99 chr4 139265968 139266130 -16363990 + B1_Mus1 SINE Alu 2 148 0 5 1647 507 178 0 0 chr4 139267560 139267661 -16362459 + (CA)n Simple_repeat Simple_repeat 1 101 0 5 1647 239 306 0 0 chr4 139267972 139268034 -16362086 + L2a LINE L2 3347 3408 -18 5 1647 267 349 9 18 chr4 139268444 139268570 -16361550 - MIRm SINE MIR -114 162 31 5 1647 213 341 27 55 chr4 139268701 139268847 -16361273 + MIRb SINE MIR 2 143 -125 5 1647 364 240 0 0 chr4 139268993 139269068 -16361052 - ID_B1 SINE B4 -8 216 142 5 1647 477 360 89 0 chr4 139269378 139269592 -16360528 - MIRb SINE MIR -12 256 24 5 1647 21 0 0 0 chr4 139269592 139269613 -16360507 + AT_rich Low_complexity Low_complexity 1 21 0 5 1647 803 233 0 0 chr4 139269715 139269861 -16360259 + B1F SINE Alu 1 146 -3 5 1647 643 291 82 17 chr4 139269936 139270167 -16359953 + B4A SINE B4 25 270 -22 5 1647 431 91 26 0 chr4 139270297 139270374 -16359746 + (CAGA)n Simple_repeat Simple_repeat 4 82 0 5 1647 188 143 0 0 chr4 139272019 139272054 -16358066 + MIR SINE MIR 104 138 -70 5 1647 225 319 8 32 chr4 139272702 139272825 -16357295 + G-rich Low_complexity Low_complexity 1 120 0 5 1647 531 82 0 0 chr4 139273073 139273146 -16356974 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1647 966 160 0 0 chr4 139273221 139273371 -16356749 + (TCTCTG)n Simple_repeat Simple_repeat 1 150 0 5 1647 260 137 19 19 chr4 139273380 139273432 -16356688 - B1_Mus2 SINE Alu -93 54 3 5 1647 232 174 56 42 chr4 139273432 139273443 -16356677 - ID_B1 SINE B4 -77 119 75 5 1647 984 244 10 0 chr4 139273439 139273644 -16356476 - B4 SINE B4 -70 222 16 5 1647 610 205 181 0 chr4 139273705 139273832 -16356288 + RSINE1 SINE B4 3 152 -13 5 1647 690 206 14 0 chr4 139273881 139274235 -16355885 + (CA)n Simple_repeat Simple_repeat 1 359 0 5 1647 242 250 40 71 chr4 139274242 139274341 -16355779 - MIRb SINE MIR -172 96 1 5 1647 1460 6 3 21 chr4 139274615 139274946 -16355174 + (TTC)n Simple_repeat Simple_repeat 1 325 0 5 1647 831 149 118 44 chr4 139274946 139275149 -16354971 - ID_B1 SINE B4 -5 219 2 5 1647 190 289 88 50 chr4 139275505 139275585 -16354535 + L2a LINE L2 3029 3111 -315 5 1647 517 189 0 0 chr4 139275875 139275970 -16354150 + RSINE1 SINE B4 3 97 -68 5 1647 228 149 0 0 chr4 139276347 139276394 -16353726 - B3 SINE B2 -1 215 169 5 1647 940 105 6 17 chr4 139277008 139277183 -16352937 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 1647 747 233 42 16 chr4 139277213 139277405 -16352715 - B4A SINE B4 -95 197 1 5 1647 627 48 0 0 chr4 139277434 139277517 -16352603 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 5 1647 1088 57 20 34 chr4 139277518 139277664 -16352456 - B1_Mus1 SINE Alu -3 145 2 5 1647 301 298 121 24 chr4 139277721 139277845 -16352275 + RSINE1 SINE B4 13 148 -17 5 1647 1423 252 43 36 chr4 139277891 139278311 -16351809 - Lx6 LINE L1 -26 7434 7012 5 1647 933 142 35 0 chr4 139278846 139278987 -16351133 - B1_Mus1 SINE Alu 0 148 3 5 1647 218 81 0 26 chr4 139279331 139279369 -16350751 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1647 628 231 77 0 chr4 139279406 139279562 -16350558 - B4A SINE B4 0 292 125 5 1647 937 154 0 0 chr4 139279597 139279740 -16350380 - B1_Mur2 SINE Alu -6 143 1 5 1647 187 336 64 27 chr4 139279780 139279890 -16350230 - MIRc SINE MIR -136 132 19 5 1647 223 72 23 23 chr4 139280796 139280839 -16349281 + (CGGGGG)n Simple_repeat Simple_repeat 6 48 0 5 1647 244 271 0 14 chr4 139281023 139281094 -16349026 + G-rich Low_complexity Low_complexity 5 74 0 5 1647 227 266 48 48 chr4 139281918 139282001 -16348119 - B4A SINE B4 0 292 210 5 1647 957 213 117 5 chr4 139282001 139282223 -16347897 - RMER1B Other Other -13 1053 807 5 1647 426 108 0 0 chr4 139282269 139282334 -16347786 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1647 266 393 0 0 chr4 139282429 139282551 -16347569 + (TG)n Simple_repeat Simple_repeat 1 122 0 5 1647 760 271 68 25 chr4 139282648 139282883 -16347237 - B4A SINE B4 -47 245 1 5 1647 1061 110 14 0 chr4 139283008 139283153 -16346967 - B1_Mur4 SINE Alu -1 149 3 5 1647 536 263 51 0 chr4 139283192 139283329 -16346791 + B3 SINE B2 72 215 -1 5 1647 290 277 148 0 chr4 139283384 139283485 -16346635 + MER58B DNA MER1_type 226 341 0 5 1647 2268 140 13 8 chr4 139283734 139284116 -16346004 - ORR1B1 LTR MaLR 0 394 11 5 1647 527 152 0 26 chr4 139284211 139284256 -16345864 + (ATGGTG)n Simple_repeat Simple_repeat 3 44 0 5 1647 2193 165 13 34 chr4 139284256 139284638 -16345482 - ORR1D1 LTR MaLR 0 374 1 5 1647 527 152 0 26 chr4 139284638 139284707 -16345413 + (ATGGTG)n Simple_repeat Simple_repeat 6 74 0 5 1647 955 152 11 0 chr4 139284684 139284862 -16345258 + (ATG)n Simple_repeat Simple_repeat 1 180 0 5 1647 232 125 0 0 chr4 139284865 139284897 -16345223 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5 1647 949 140 4 9 chr4 139284900 139285131 -16344989 + (ATGGTG)n Simple_repeat Simple_repeat 1 229 0 5 1647 1281 41 0 0 chr4 139285905 139286052 -16344068 + B1_Mm SINE Alu 1 147 0 5 1647 261 250 79 0 chr4 139286136 139286212 -16343908 + ID4 SINE ID 2 83 0 5 1647 407 230 47 7 chr4 139286245 139286394 -16343726 + L1MEf LINE L1 1999 2153 -4047 5 1647 1179 185 24 0 chr4 139286512 139286723 -16343397 - B3 SINE B2 0 216 1 5 1647 328 280 74 9 chr4 139288252 139288360 -16341760 - B4 SINE B4 0 292 178 5 1647 235 292 14 0 chr4 139288361 139288433 -16341687 - MTB LTR MaLR 0 400 328 5 1647 342 0 0 0 chr4 139288501 139288539 -16341581 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1647 417 224 23 12 chr4 139288569 139288655 -16341465 - RSINE1 SINE B4 -70 95 9 5 1647 251 254 45 0 chr4 139288723 139288790 -16341330 - ID4_ SINE ID -2 81 12 5 1647 24 0 0 0 chr4 139288953 139288977 -16341143 + AT_rich Low_complexity Low_complexity 1 24 0 5 1647 229 200 16 32 chr4 139289110 139289172 -16340948 + MLT1A1 LTR MaLR 346 406 -2 5 1647 351 351 118 71 chr4 139290534 139290625 -16339495 + LTR16A1 LTR ERVL 1 93 -363 5 1647 2378 156 5 11 chr4 139290625 139290994 -16339126 + ORR1B2 LTR MaLR 1 367 0 5 1647 351 351 118 71 chr4 139290994 139291242 -16338878 + LTR16A1 LTR ERVL 94 356 -100 5 1647 379 213 10 78 chr4 139291494 139291596 -16338524 + RMER10B LTR ERVL 272 366 -32 5 1647 744 257 115 43 chr4 139291959 139292352 -16337768 + MT2A LTR ERVL 1 542 -59 5 1647 432 0 0 0 chr4 139292358 139292406 -16337714 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 5 1647 2217 89 6 3 chr4 139292406 139292723 -16337397 + ORR1A2 LTR MaLR 2 319 -8 5 1647 675 120 0 0 chr4 139292726 139292834 -16337286 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 5 1647 229 184 0 0 chr4 139292834 139292872 -16337248 + MLT2C2 LTR ERVL 522 559 0 5 1647 207 0 0 0 chr4 139293984 139294007 -16336113 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1647 247 222 0 45 chr4 139296880 139297012 -16333108 + (TCCA)n Simple_repeat Simple_repeat 1 126 0 5 1647 903 137 0 0 chr4 139297068 139297229 -16332891 + (TCCA)n Simple_repeat Simple_repeat 4 164 0 5 1647 300 322 23 28 chr4 139297258 139297434 -16332686 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 5 1647 1141 288 36 37 chr4 139297449 139297866 -16332254 + MTD LTR MaLR 3 405 -14 5 1647 429 54 0 0 chr4 139298287 139298343 -16331777 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1647 180 77 0 0 chr4 139298427 139298453 -16331667 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1647 195 250 147 0 chr4 139298930 139298998 -16331122 + MIRm SINE MIR 90 167 -109 6 1647 731 276 136 16 chr4 139300240 139300490 -16329630 + B4 SINE B4 13 292 0 6 1647 180 179 0 0 chr4 139300493 139300532 -16329588 + (CATA)n Simple_repeat Simple_repeat 2 40 0 6 1647 182 286 0 0 chr4 139301610 139301659 -16328461 + MIRc SINE MIR 76 124 -144 6 1647 235 277 0 0 chr4 139302096 139302143 -16327977 + G-rich Low_complexity Low_complexity 2 48 0 6 1647 249 197 0 0 chr4 139302699 139302760 -16327360 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1647 243 103 0 0 chr4 139302939 139302978 -16327142 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1647 185 237 79 0 chr4 139303139 139303215 -16326905 - L2b LINE L2 -322 3053 2972 6 1647 229 316 10 48 chr4 139303569 139303672 -16326448 + Charlie5 DNA MER1_type 28 126 -2498 6 1647 262 258 54 33 chr4 139303780 139303872 -16326248 + B1F SINE Alu 54 147 -2 6 1647 450 215 0 0 chr4 139303877 139303956 -16326164 + ID4_ SINE ID 2 80 -3 6 1647 351 0 0 0 chr4 139304143 139304182 -16325938 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1647 438 255 122 14 chr4 139304313 139304460 -16325660 + RSINE1 SINE B4 3 165 0 6 1647 291 150 0 0 chr4 139304467 139304527 -16325593 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1647 1039 190 102 10 chr4 139304547 139304744 -16325376 + B3 SINE B2 2 216 0 6 1647 243 157 0 0 chr4 139305592 139305643 -16324477 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 6 1647 1003 155 3 12 chr4 139305781 139306113 -16324007 + (TGAA)n Simple_repeat Simple_repeat 1 329 0 6 1647 201 178 0 0 chr4 139306233 139306278 -16323842 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 6 1647 879 217 0 0 chr4 139306640 139306797 -16323323 - RSINE1 SINE B4 -6 159 3 6 1647 590 225 27 40 chr4 139309166 139309342 -16320778 + B3A SINE B2 27 215 -1 6 1647 1134 95 0 0 chr4 139309378 139309526 -16320594 - B1_Mus1 SINE Alu 0 148 1 6 1647 479 194 167 0 chr4 139309553 139309661 -16320459 + B1_Mur3 SINE Alu 2 127 -22 6 1647 216 285 70 51 chr4 139310024 139310170 -16319950 - MIRb SINE MIR -91 171 22 6 1647 274 243 0 51 chr4 139310526 139310604 -16319516 + C-rich Low_complexity Low_complexity 2 75 0 6 1647 290 177 48 0 chr4 139311158 139311220 -16318900 - PB1D7 SINE Alu 0 120 56 6 1647 208 235 20 0 chr4 139311409 139311460 -16318660 + MIR SINE MIR 95 146 -116 6 1647 744 81 33 33 chr4 139312502 139312682 -16317438 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1647 483 18 0 0 chr4 139312788 139312844 -16317276 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1647 204 156 0 0 chr4 139313269 139313301 -16316819 - MIRc SINE MIR -120 148 117 6 1647 312 27 0 0 chr4 139313817 139313854 -16316266 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1647 234 240 0 20 chr4 139314158 139314209 -16315911 + L2a LINE L2 3377 3426 0 6 1647 208 225 0 0 chr4 139314944 139314984 -16315136 + G-rich Low_complexity Low_complexity 4 43 0 6 1647 384 22 0 0 chr4 139315003 139315048 -16315072 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1647 663 216 48 86 chr4 139315579 139315766 -16314354 + B3A SINE B2 3 182 -16 6 1647 189 0 0 0 chr4 139315766 139315787 -16314333 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1647 222 330 64 28 chr4 139315810 139315919 -16314201 - MIR SINE MIR -102 160 48 6 1647 305 225 282 8 chr4 139316144 139316159 -16313961 - B4 SINE B4 -59 233 189 6 1647 262 218 172 0 chr4 139316159 139316246 -16313874 - PB1D7 SINE Alu -8 112 11 6 1647 305 225 282 8 chr4 139316246 139316287 -16313833 - B4 SINE B4 -59 188 52 6 1647 229 245 0 0 chr4 139318522 139318571 -16311549 - MIRc SINE MIR -143 125 77 6 1647 208 304 29 29 chr4 139319438 139319577 -16310543 + (TCTCTG)n Simple_repeat Simple_repeat 6 144 0 6 1647 232 196 0 19 chr4 139319516 139319568 -16310552 + CT-rich Low_complexity Low_complexity 1 51 0 6 1647 433 244 0 20 chr4 139320269 139320393 -16309727 + B1F SINE Alu 1 149 0 6 1647 252 342 0 0 chr4 139320401 139320480 -16309640 + ID4 SINE ID 3 81 -2 6 1647 735 206 77 56 chr4 139321276 139321471 -16308649 - B3 SINE B2 -17 199 1 6 1647 379 314 12 61 chr4 139321478 139321641 -16308479 - B4A SINE B4 -95 197 43 6 1647 325 291 0 0 chr4 139321645 139321724 -16308396 - B1F2 SINE Alu -64 85 7 6 1647 1219 62 0 0 chr4 139321872 139322017 -16308103 - B1_Mus2 SINE Alu -1 146 2 6 1647 404 232 159 48 chr4 139324633 139324778 -16305342 + RSINE1 SINE B4 3 163 -2 6 1647 246 32 0 0 chr4 139324792 139324823 -16305297 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1647 247 347 23 32 chr4 139324868 139325055 -16305065 + MIRb SINE MIR 23 204 -64 6 1647 206 347 14 0 chr4 139325632 139325704 -16304416 - MIR3 SINE MIR -21 187 115 6 1647 1138 196 23 0 chr4 139325911 139326130 -16303990 - ID_B1 SINE B4 0 224 1 6 1647 200 238 71 48 chr4 139326164 139326248 -16303872 - MIRm SINE MIR -136 140 55 6 1647 195 42 0 0 chr4 139327330 139327354 -16302766 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 6 1647 552 310 77 34 chr4 139328054 139328261 -16301859 - MIRb SINE MIR -6 262 47 6 1647 294 321 0 0 chr4 139329142 139329226 -16300894 + MIRb SINE MIR 41 124 -144 6 1648 207 184 122 0 chr4 139329594 139329643 -16300477 + MIR SINE MIR 26 80 -182 6 1648 305 236 0 18 chr4 139329670 139329782 -16300338 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 6 1648 238 194 14 14 chr4 139329880 139329953 -16300167 + (TGGG)n Simple_repeat Simple_repeat 3 75 0 6 1648 427 320 7 13 chr4 139329960 139330112 -16300008 + (TGGA)n Simple_repeat Simple_repeat 2 152 0 6 1648 800 192 5 0 chr4 139330124 139330354 -16299766 + (TGGA)n Simple_repeat Simple_repeat 1 231 0 6 1648 679 184 12 0 chr4 139330502 139330647 -16299473 + (TA)n Simple_repeat Simple_repeat 1 147 0 6 1648 1341 68 0 0 chr4 139330647 139330824 -16299296 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 6 1648 679 184 12 0 chr4 139330824 139330841 -16299279 + (TA)n Simple_repeat Simple_repeat 2 18 0 6 1648 211 286 0 23 chr4 139330967 139331053 -16299067 + GA-rich Low_complexity Low_complexity 2 85 0 6 1648 619 233 0 29 chr4 139331755 139331892 -16298228 - ID_B1 SINE B4 -11 213 81 6 1648 224 30 30 0 chr4 139332175 139332208 -16297912 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1648 441 0 0 0 chr4 139333107 139333156 -16296964 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1648 453 36 0 0 chr4 139333811 139333866 -16296254 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1648 295 352 40 92 chr4 139333882 139334154 -16295966 + RMER12 LTR ERVK 771 1028 -294 6 1648 1009 274 43 25 chr4 139334073 139334354 -16295766 - B4A SINE B4 0 292 7 6 1648 234 348 0 0 chr4 139337213 139337282 -16292838 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 6 1648 229 347 64 3 chr4 139337387 139337531 -16292589 + L2b LINE L2 3233 3387 0 6 1648 703 148 57 0 chr4 139337564 139337686 -16292434 - B1_Mur4 SINE Alu -16 134 6 6 1648 346 230 18 99 chr4 139337690 139337801 -16292319 - ID_B1 SINE B4 -2 222 121 6 1648 561 99 0 0 chr4 139337801 139337882 -16292238 + (TCC)n Simple_repeat Simple_repeat 2 82 0 6 1648 1255 54 0 0 chr4 139337904 139338051 -16292069 - B1_Mus2 SINE Alu 0 147 1 6 1648 643 236 49 0 chr4 139338051 139338195 -16291925 - ID_B1 SINE B4 -68 156 6 6 1648 226 343 0 9 chr4 139340124 139340230 -16289890 + CT-rich Low_complexity Low_complexity 1 105 0 6 1648 342 209 31 102 chr4 139340872 139341000 -16289120 + RSINE1 SINE B4 2 120 -45 6 1648 230 241 0 17 chr4 139341491 139341550 -16288570 + CT-rich Low_complexity Low_complexity 2 59 0 6 1648 657 190 0 0 chr4 139341579 139341753 -16288367 + (TTCA)n Simple_repeat Simple_repeat 1 174 0 6 1648 285 146 0 0 chr4 139342013 139342061 -16288059 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1648 198 0 0 0 chr4 139342061 139342083 -16288037 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1648 218 32 32 0 chr4 139342130 139342161 -16287959 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1648 211 262 25 0 chr4 139342177 139342256 -16287864 - L2a LINE L2 -328 3098 3015 6 1648 279 324 70 91 chr4 139343682 139343923 -16286197 + B4A SINE B4 43 278 -14 6 1648 230 194 16 0 chr4 139343937 139343999 -16286121 + (CATA)n Simple_repeat Simple_repeat 4 66 0 6 1648 342 297 16 63 chr4 139346287 139346413 -16283707 - B1_Mur1 SINE Alu -29 120 1 6 1648 442 234 44 18 chr4 139346309 139346422 -16283698 - B4 SINE B4 -100 192 77 6 1648 676 235 7 12 chr4 139348671 139349087 -16281033 + (TATATG)n Simple_repeat Simple_repeat 1 413 0 6 1648 342 0 0 0 chr4 139349485 139349523 -16280597 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 6 1648 228 143 0 0 chr4 139349972 139350014 -16280106 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 1648 225 270 196 1 chr4 139350371 139350483 -16279637 - MIRc SINE MIR -44 164 37 6 1648 376 231 0 25 chr4 139350893 139350973 -16279147 + ID4_ SINE ID 4 81 -2 6 1648 297 0 0 0 chr4 139353886 139353919 -16276201 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1648 709 253 94 5 chr4 139353922 139354113 -16276007 - ID_B1 SINE B4 -11 213 6 6 1648 464 281 131 31 chr4 139354441 139354632 -16275488 + ID_B1 SINE B4 15 224 0 6 1648 747 145 120 15 chr4 139354788 139354835 -16275285 - B1_Mur2 SINE Alu -1 148 104 6 1648 423 0 0 0 chr4 139354835 139354882 -16275238 + (AGTAG)n Simple_repeat Simple_repeat 2 48 0 6 1648 747 145 120 15 chr4 139354882 139354967 -16275153 - B1_Mur2 SINE Alu -46 103 3 6 1648 221 286 14 43 chr4 139355246 139355484 -16274636 + G-rich Low_complexity Low_complexity 1 231 0 7 1648 468 263 17 26 chr4 139356304 139356421 -16273699 - PB1D10 SINE Alu -1 116 1 7 1648 384 255 9 47 chr4 139356439 139356546 -16273574 - PB1D10 SINE Alu -3 114 12 7 1648 242 298 56 52 chr4 139357205 139357353 -16272767 + MIR3 SINE MIR 47 187 -21 7 1648 653 219 19 52 chr4 139357697 139357851 -16272269 + B1F SINE Alu 1 149 0 7 1648 520 275 39 26 chr4 139357864 139358017 -16272103 + RSINE1 SINE B4 11 165 0 7 1648 189 0 0 0 chr4 139358018 139358039 -16272081 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1648 826 270 60 0 chr4 139358129 139358339 -16271781 + B4 SINE B4 1 223 -69 7 1648 582 265 52 12 chr4 139358339 139358511 -16271609 + B3A SINE B2 4 182 -16 7 1648 464 0 18 0 chr4 139358515 139358571 -16271549 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1648 708 105 40 28 chr4 139359108 139359284 -16270836 + (TGAA)n Simple_repeat Simple_repeat 1 178 0 7 1648 871 203 4 7 chr4 139359290 139359560 -16270560 + (TGGA)n Simple_repeat Simple_repeat 1 269 0 7 1648 225 0 0 0 chr4 139359876 139359901 -16270219 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1648 462 131 0 0 chr4 139360311 139360410 -16269710 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1648 349 52 33 33 chr4 139360635 139360695 -16269425 + (TCTCTG)n Simple_repeat Simple_repeat 1 60 0 7 1648 675 311 63 30 chr4 139360705 139360981 -16269139 - B4A SINE B4 -6 286 2 7 1648 694 215 37 0 chr4 139361015 139361150 -16268970 + B1F SINE Alu 1 140 -9 7 1648 309 51 0 0 chr4 139362048 139362087 -16268033 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1648 468 111 0 0 chr4 139362701 139362773 -16267347 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1648 246 62 0 0 chr4 139363362 139363394 -16266726 + (GGA)n Simple_repeat Simple_repeat 3 34 0 7 1648 3070 60 0 8 chr4 139364074 139364461 -16265659 + L1Md_F2 LINE L1 6199 6582 0 7 1648 184 348 11 63 chr4 139364970 139365065 -16265055 + L3 LINE CR1 4256 4345 -144 7 1648 23 33 0 0 chr4 139366048 139366078 -16264042 + AT_rich Low_complexity Low_complexity 1 30 0 7 1648 531 0 0 0 chr4 139366209 139366268 -16263852 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1648 905 133 0 7 chr4 139366280 139366424 -16263696 - B1_Mus2 SINE Alu -1 146 4 7 1648 579 264 35 23 chr4 139366424 139366451 -16263669 - ID_B1 SINE B4 0 224 52 7 1648 273 248 0 17 chr4 139366726 139366802 -16263318 - B1F SINE Alu -21 99 26 7 1648 681 13 0 0 chr4 139367387 139367465 -16262655 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1648 459 0 0 0 chr4 139367704 139367755 -16262365 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1648 319 266 13 0 chr4 139368310 139368389 -16261731 + MIRc SINE MIR 44 123 -145 7 1648 288 0 0 0 chr4 139368389 139368421 -16261699 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1648 221 350 30 10 chr4 139368687 139368788 -16261332 + MIR SINE MIR 105 207 -55 7 1648 342 252 8 120 chr4 139368816 139368933 -16261187 - PB1D7 SINE Alu 0 120 17 7 1648 483 18 0 0 chr4 139368937 139368993 -16261127 + (CTTG)n Simple_repeat Simple_repeat 1 56 0 7 1648 745 244 51 0 chr4 139370220 139370376 -16259744 - B3 SINE B2 -52 164 1 7 1648 628 315 42 26 chr4 139370410 139370599 -16259521 + ID_B1 SINE B4 32 223 -1 7 1648 1154 70 6 0 chr4 139370988 139371146 -16258974 + B2_Mm1a SINE B2 2 160 -33 7 1648 372 22 0 0 chr4 139371146 139371191 -16258929 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 7 1648 889 116 14 7 chr4 139371244 139371383 -16258737 - B1_Mur3 SINE Alu 0 149 10 7 1648 208 273 0 0 chr4 139374026 139374081 -16256039 + C-rich Low_complexity Low_complexity 1 55 0 7 1648 520 134 0 20 chr4 139374881 139374980 -16255140 + CT-rich Low_complexity Low_complexity 2 98 0 7 1648 495 0 0 0 chr4 139375845 139375900 -16254220 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1648 185 139 23 0 chr4 139375900 139375943 -16254177 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1648 432 211 152 9 chr4 139376233 139376338 -16253782 + RSINE1 SINE B4 2 121 -44 7 1648 579 99 0 0 chr4 139376521 139376622 -16253498 + (GA)n Simple_repeat Simple_repeat 1 101 0 7 1648 772 63 9 9 chr4 139376631 139376743 -16253377 + (GAA)n Simple_repeat Simple_repeat 2 113 0 7 1648 279 0 0 0 chr4 139379407 139379438 -16250682 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1648 226 232 17 35 chr4 139380931 139380989 -16249131 + ID4_ SINE ID 12 68 -15 7 1648 590 99 11 0 chr4 139382205 139382296 -16247824 + (GA)n Simple_repeat Simple_repeat 1 92 0 7 1648 23 0 0 0 chr4 139382963 139382986 -16247134 + AT_rich Low_complexity Low_complexity 1 23 0 7 1648 369 0 0 0 chr4 139383147 139383188 -16246932 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1648 414 0 0 0 chr4 139383188 139383233 -16246887 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1648 303 175 0 0 chr4 139384189 139384246 -16245874 + (CGTG)n Simple_repeat Simple_repeat 4 60 0 7 1648 299 347 0 0 chr4 139385162 139385260 -16244860 + CT-rich Low_complexity Low_complexity 2 99 0 7 1648 327 25 0 0 chr4 139387006 139387046 -16243074 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1648 253 279 10 31 chr4 139388878 139388974 -16241146 + C-rich Low_complexity Low_complexity 2 95 0 7 1648 210 143 0 0 chr4 139389667 139389702 -16240418 + (TTTC)n Simple_repeat Simple_repeat 1 35 0 7 1648 477 0 0 0 chr4 139390385 139390438 -16239682 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1648 524 137 0 10 chr4 139392060 139392163 -16237957 + (TC)n Simple_repeat Simple_repeat 2 103 0 7 1648 463 254 34 51 chr4 139392455 139392633 -16237487 + CT-rich Low_complexity Low_complexity 4 178 0 7 1648 858 93 0 0 chr4 139393064 139393203 -16236917 + (TC)n Simple_repeat Simple_repeat 1 139 0 7 1648 180 176 0 0 chr4 139393758 139393792 -16236328 + C-rich Low_complexity Low_complexity 5 38 0 7 1648 203 103 0 25 chr4 139393860 139393900 -16236220 + (TCTCC)n Simple_repeat Simple_repeat 2 40 0 7 1648 246 125 0 0 chr4 139395522 139395570 -16234550 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 7 1648 270 323 75 8 chr4 139396280 139396414 -16233706 - MIRc SINE MIR -68 200 58 7 1648 707 242 20 70 chr4 139396439 139396639 -16233481 + B3A SINE B2 2 191 -7 7 1648 267 146 0 0 chr4 139396641 139396696 -16233424 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1648 545 284 29 44 chr4 139396700 139396906 -16233214 - B3 SINE B2 -13 203 1 7 1648 539 283 48 0 chr4 139397635 139397780 -16232340 + B4A SINE B4 1 152 -140 7 1648 486 0 0 0 chr4 139397874 139397928 -16232192 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1648 236 333 103 5 chr4 139398013 139398197 -16231923 + L1M5 LINE L1 5267 5468 -976 7 1648 211 213 21 0 chr4 139398638 139398685 -16231435 + CT-rich Low_complexity Low_complexity 3 50 0 7 1648 952 256 76 22 chr4 139399050 139399326 -16230794 - B4A SINE B4 -1 291 1 7 1648 180 265 171 29 chr4 139399441 139399511 -16230609 + MER5A DNA MER1_type 10 89 -100 7 1648 456 186 5 75 chr4 139399512 139399698 -16230422 + (CACCC)n Simple_repeat Simple_repeat 3 175 0 7 1648 970 122 182 0 chr4 139400196 139400377 -16229743 - B3 SINE B2 0 216 3 7 1648 260 111 0 22 chr4 139400401 139400447 -16229673 + (TCC)n Simple_repeat Simple_repeat 2 46 0 7 1648 234 143 0 0 chr4 139400459 139400508 -16229612 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1648 310 224 171 33 chr4 139400552 139400704 -16229416 - B4A SINE B4 -118 174 2 7 1648 525 92 0 0 chr4 139400804 139400880 -16229240 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 7 1648 463 211 95 9 chr4 139400920 139401025 -16229095 - B1_Mur4 SINE Alu -1 149 36 7 1648 222 191 0 0 chr4 139401069 139401111 -16229009 + G-rich Low_complexity Low_complexity 1 42 0 7 1648 233 224 15 0 chr4 139401399 139401466 -16228654 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1648 863 188 160 11 chr4 139401517 139401705 -16228415 - B3 SINE B2 0 216 1 7 1648 750 250 52 48 chr4 139401930 139402140 -16227980 + B3 SINE B2 3 213 -3 7 1648 192 125 0 0 chr4 139402227 139402259 -16227861 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1648 490 272 8 8 chr4 139402262 139402388 -16227732 + ID_B1 SINE B4 73 198 -26 7 1648 186 43 0 0 chr4 139403002 139403025 -16227095 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 7 1648 280 286 67 67 chr4 139403319 139403424 -16226696 - PB1D9 SINE Alu -15 105 1 7 1648 258 32 0 0 chr4 139403440 139403471 -16226649 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1648 499 201 17 11 chr4 139403471 139403647 -16226473 + (TA)n Simple_repeat Simple_repeat 1 177 0 7 1648 371 209 0 0 chr4 139403724 139403791 -16226329 + PB1D10 SINE Alu 37 103 -14 7 1648 1266 135 234 0 chr4 139403813 139404087 -16226033 - RMER1C Other Other -1 1341 1004 7 1648 253 194 183 17 chr4 139404244 139404363 -16225757 - L1MB3 LINE L1 -263 5920 5784 7 1648 535 231 0 0 chr4 139404700 139404804 -16225316 - B1_Mus2 SINE Alu -21 126 23 7 1648 279 0 0 0 chr4 139404804 139404835 -16225285 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1648 276 30 0 0 chr4 139404835 139404868 -16225252 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1648 834 219 54 16 chr4 139404944 139405130 -16224990 + B4A SINE B4 6 198 -94 7 1648 257 203 17 17 chr4 139405131 139405191 -16224929 + (CATA)n Simple_repeat Simple_repeat 4 63 0 7 1648 1514 68 16 0 chr4 139405294 139405486 -16224634 + B2_Mm2 SINE B2 1 195 0 7 1648 573 169 227 39 chr4 139405504 139405658 -16224462 + B3 SINE B2 30 212 -4 7 1648 1827 136 72 33 chr4 139405658 139405992 -16224128 + Lx4A LINE L1 6712 7058 0 8 1648 464 256 52 75 chr4 139405992 139406010 -16224110 + B3A SINE B2 184 198 0 7 1648 282 240 9 130 chr4 139406303 139406418 -16223702 - MIRc SINE MIR -101 167 67 8 1648 216 0 0 0 chr4 139407184 139407208 -16222912 + (CGGG)n Simple_repeat Simple_repeat 3 26 0 8 1648 844 211 120 5 chr4 139407646 139407846 -16222274 - ID_B1 SINE B4 -1 223 1 8 1648 393 120 54 31 chr4 139409477 139409709 -16220411 + (TG)n Simple_repeat Simple_repeat 1 237 0 8 1648 357 126 69 35 chr4 139409724 139409897 -16220223 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1648 213 39 0 0 chr4 139410375 139410401 -16219719 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 8 1648 751 145 0 24 chr4 139410509 139410636 -16219484 - B1_Mur2 SINE Alu -1 148 25 8 1648 232 291 67 50 chr4 139410752 139410909 -16219211 + MIR SINE MIR 38 209 -59 8 1648 196 203 109 0 chr4 139411080 139411144 -16218976 - MIR SINE MIR -75 133 63 8 1648 468 0 0 0 chr4 139411755 139411807 -16218313 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1648 314 250 21 40 chr4 139412005 139412111 -16218009 - MIRm SINE MIR -92 176 73 8 1648 214 232 47 35 chr4 139412240 139412325 -16217795 - BC1_Mm scRNA scRNA -40 112 27 8 1648 329 284 68 10 chr4 139412626 139412729 -16217391 + MER53 DNA hAT 10 118 -75 8 1648 1356 67 0 0 chr4 139413006 139413186 -16216934 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 1648 507 271 56 31 chr4 139413454 139413614 -16216506 - RSINE1 SINE B4 0 165 2 8 1648 366 185 36 24 chr4 139413747 139413830 -16216290 - PB1D10 SINE Alu -23 94 11 8 1648 2858 144 58 10 chr4 139413875 139414378 -16215742 + RLTR11A2 LTR ERVK 1 527 0 8 1648 310 100 40 0 chr4 139414972 139415022 -16215098 + MT2B LTR ERVL 41 92 -509 8 1648 737 272 37 78 chr4 139415037 139415334 -16214786 + MT2B LTR ERVL 57 512 -89 8 1648 910 135 0 0 chr4 139415342 139415490 -16214630 + URR1B DNA MER1_type 78 225 0 8 1648 288 77 0 0 chr4 139415563 139415602 -16214518 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 8 1648 802 187 15 0 chr4 139415602 139415736 -16214384 - B1_Mur2 SINE Alu -10 139 4 8 1648 266 336 16 0 chr4 139415782 139415911 -16214209 - ID2 SINE ID -21 131 1 8 1648 423 0 0 0 chr4 139415921 139415968 -16214152 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 8 1648 217 279 0 0 chr4 139415969 139416012 -16214108 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 8 1648 543 335 33 0 chr4 139416017 139416169 -16213951 - RSINE1 SINE B4 -6 159 3 8 1648 456 286 0 9 chr4 139416184 139416297 -16213823 - PB1D10 SINE Alu -5 112 1 8 1648 277 287 40 81 chr4 139416297 139416383 -16213737 - B4A SINE B4 -208 84 5 8 1648 321 202 46 35 chr4 139416396 139416483 -16213637 + MTEb LTR MaLR 13 100 -319 8 1648 974 67 0 7 chr4 139417461 139417597 -16212523 - RMER19A LTR ERVK 0 737 603 8 1648 1402 106 243 0 chr4 139417594 139417849 -16212271 - RMER19A LTR ERVK -420 317 1 8 1648 1129 191 74 37 chr4 139417872 139418116 -16212004 + MTEb LTR MaLR 120 372 -7 8 1648 5333 252 76 36 chr4 139418119 139418531 -16211589 + MTEb-int LTR MaLR 1 456 -1124 8 1648 513 0 0 0 chr4 139418531 139418588 -16211532 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1648 5333 252 76 36 chr4 139418588 139419692 -16210428 + MTEb-int LTR MaLR 457 1577 -3 8 1648 1296 247 57 3 chr4 139419712 139420045 -16210075 + MTEb LTR MaLR 21 371 -8 8 1648 242 116 23 0 chr4 139420156 139420199 -16209921 + (CATA)n Simple_repeat Simple_repeat 1 44 0 8 1648 705 93 0 0 chr4 139420311 139420418 -16209702 + (CA)n Simple_repeat Simple_repeat 2 108 0 8 1648 447 280 17 17 chr4 139420431 139420551 -16209569 + PB1D7 SINE Alu 1 120 0 8 1648 276 259 87 47 chr4 139420758 139420908 -16209212 + ORR1E LTR MaLR 166 321 -38 8 1648 1129 137 11 32 chr4 139420909 139421098 -16209022 + B2_Mm2 SINE B2 1 185 -10 8 1648 574 320 39 0 chr4 139421125 139421328 -16208792 + B4A SINE B4 1 211 -81 8 1648 334 335 106 18 chr4 139421325 139421495 -16208625 - ORR1D2 LTR MaLR -41 329 145 8 1648 239 105 0 26 chr4 139421508 139421547 -16208573 - ORR1D2 LTR MaLR -332 38 1 8 1648 414 208 108 10 chr4 139422140 139422242 -16207878 + RMER15 LTR ERVL 422 533 -42 8 1648 764 289 32 0 chr4 139422601 139422788 -16207332 + ID_B1 SINE B4 28 220 -4 8 1648 1129 270 29 15 chr4 139423136 139423410 -16206710 + B4 SINE B4 5 282 -10 8 1648 391 276 107 44 chr4 139423494 139423699 -16206421 - RMER12 LTR ERVK -335 987 770 8 1648 433 308 21 21 chr4 139423746 139423932 -16206188 - Lx8 LINE L1 -2 7471 7286 8 1648 364 290 9 53 chr4 139424035 139424051 -16206069 - PB1D10 SINE Alu -8 109 99 8 1648 806 204 171 0 chr4 139424051 139424232 -16205888 - B3 SINE B2 0 216 5 8 1648 364 290 9 53 chr4 139424232 139424328 -16205792 - PB1D10 SINE Alu -19 98 2 8 1648 396 206 65 0 chr4 139424328 139424404 -16205716 + MTD LTR MaLR 164 245 -174 8 1648 485 267 0 0 chr4 139424486 139424606 -16205514 - RMER1B Other Other -352 714 595 8 1648 1089 163 84 0 chr4 139424622 139424825 -16205295 - MTC LTR MaLR -197 224 5 8 1648 310 215 29 58 chr4 139424822 139424891 -16205229 + MTD LTR MaLR 316 382 -39 8 1648 394 232 88 88 chr4 139424952 139425122 -16204998 - B2_Mm2 SINE B2 -6 189 20 8 1648 239 366 0 30 chr4 139426764 139426930 -16203190 + (TGGG)n Simple_repeat Simple_repeat 1 161 0 8 1648 257 315 9 27 chr4 139427171 139427282 -16202838 + (ATGGTG)n Simple_repeat Simple_repeat 1 109 0 8 1648 393 329 0 12 chr4 139427283 139427452 -16202668 - HAL1-2a_MD LINE L1 -516 2508 2342 8 1648 247 267 0 0 chr4 139427486 139427546 -16202574 + (ATG)n Simple_repeat Simple_repeat 3 62 0 8 1648 234 200 100 0 chr4 139427956 139428016 -16202104 - MIRm SINE MIR -124 152 87 8 1648 333 242 0 0 chr4 139429157 139429248 -16200872 + (TG)n Simple_repeat Simple_repeat 1 91 0 8 1648 571 237 6 6 chr4 139429278 139429456 -16200664 + (TA)n Simple_repeat Simple_repeat 2 179 0 8 1648 189 364 34 20 chr4 139429717 139429863 -16200257 - MIRb SINE MIR -68 200 53 8 1648 210 128 0 0 chr4 139429905 139429944 -16200176 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 8 1648 1154 216 96 40 chr4 139429967 139430018 -16200102 - MTE2b LTR MaLR 0 379 330 8 1648 889 174 21 0 chr4 139430018 139430162 -16199958 + B1_Mur1 SINE Alu 1 147 -2 8 1648 1154 216 96 40 chr4 139430162 139430433 -16199687 - MTE2b LTR MaLR -50 329 40 8 1648 5977 116 31 1 chr4 139430437 139431281 -16198839 - Lx4A LINE L1 -1 7057 6189 8 1648 1816 76 25 18 chr4 139431289 139431570 -16198550 + Lx4A LINE L1 5891 6173 -885 8 1648 301 260 14 0 chr4 139431576 139431649 -16198471 - MTE2b LTR MaLR -305 74 1 8 1648 280 325 159 19 chr4 139431984 139432292 -16197828 - L2b LINE L2 -1 3374 3024 8 1648 408 25 73 12 chr4 139433662 139433744 -16196376 + (TTTTG)n Simple_repeat Simple_repeat 2 88 0 8 1648 962 60 8 0 chr4 139433748 139433881 -16196239 - B1_Mus2 SINE Alu 0 147 14 8 1648 357 235 101 81 chr4 139433782 139433930 -16196190 - MT2B LTR ERVL -337 264 114 8 1648 224 330 18 27 chr4 139434294 139434406 -16195714 + (CATG)n Simple_repeat Simple_repeat 1 111 0 8 1648 758 235 36 31 chr4 139434474 139434667 -16195453 - B3A SINE B2 -4 194 1 8 1648 707 197 0 8 chr4 139434668 139434801 -16195319 - B4 SINE B4 -66 226 95 8 1648 1242 100 0 0 chr4 139434806 139434986 -16195134 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1648 560 154 0 9 chr4 139434986 139435091 -16195029 + CT-rich Low_complexity Low_complexity 1 104 0 8 1648 887 78 28 0 chr4 139435091 139435233 -16194887 + (TC)n Simple_repeat Simple_repeat 2 147 0 8 1648 288 358 65 36 chr4 139435265 139435543 -16194577 - MLT1B LTR MaLR -48 342 57 8 1648 477 320 11 23 chr4 139436061 139436237 -16193883 - MER121 Unknown Unknown -111 301 128 8 1648 358 276 82 0 chr4 139436379 139436477 -16193643 + ID_B1 SINE B4 12 117 -107 8 1648 207 0 0 0 chr4 139437207 139437230 -16192890 + (CAGGC)n Simple_repeat Simple_repeat 2 24 0 8 1648 396 164 0 0 chr4 139437451 139437518 -16192602 + ID_B1 SINE B4 102 168 -56 8 1648 689 212 75 6 chr4 139438775 139438936 -16191184 - MTEa LTR MaLR -11 368 197 8 1648 812 263 92 5 chr4 139439024 139439242 -16190878 - MTEa LTR MaLR -141 238 2 8 1648 2792 250 196 21 chr4 139439243 139440165 -16189955 - MTEa-int LTR MaLR 0 1580 497 8 1648 2396 129 62 0 chr4 139440155 139440542 -16189578 + MTC LTR MaLR 9 419 -2 8 1648 4928 190 46 42 chr4 139440547 139441879 -16188241 + MTC-int LTR MaLR 18 1258 0 8 1648 258 178 0 0 chr4 139441913 139441958 -16188162 - B1_Mus1 SINE Alu -93 55 11 8 1648 361 268 83 89 chr4 139441968 139442013 -16188107 - MTEa-int LTR MaLR -1100 480 445 8 1648 1158 101 59 48 chr4 139442013 139442200 -16187920 - B2_Mm2 SINE B2 -5 190 2 8 1648 361 268 83 89 chr4 139442200 139442334 -16187786 - MTEa-int LTR MaLR -1136 444 302 8 1648 643 163 3 3 chr4 139442294 139442412 -16187708 + B1_Mus2 SINE Alu 19 136 -13 8 1648 300 53 0 0 chr4 139442412 139442450 -16187670 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 8 1648 237 159 0 0 chr4 139442488 139442532 -16187588 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1648 272 286 282 11 chr4 139442559 139442736 -16187384 - B4 SINE B4 -18 274 50 8 1648 722 225 15 51 chr4 139442740 139442937 -16187183 + ORR1D1 LTR MaLR 6 195 -179 8 1648 519 186 132 9 chr4 139442873 139442987 -16187133 - MTEa-int LTR MaLR -1452 128 1 8 1648 676 187 151 13 chr4 139442987 139443161 -16186959 - MTEa LTR MaLR 0 379 155 8 1648 216 395 0 39 chr4 139443995 139444124 -16185996 - MIRm SINE MIR -80 196 73 8 1648 1438 79 5 5 chr4 139444149 139444340 -16185780 + B2_Mm1a SINE B2 1 191 -2 8 1648 199 129 0 0 chr4 139444669 139444700 -16185420 - L2c LINE L2 -20 3367 3337 8 1648 264 241 30 0 chr4 139444719 139444800 -16185320 - MIR SINE MIR -98 170 82 8 1648 186 256 0 0 chr4 139445220 139445259 -16184861 - MIRb SINE MIR -8 260 222 8 1648 199 195 49 0 chr4 139445229 139445270 -16184850 - L2a LINE L2 -21 3405 3363 8 1648 978 254 54 36 chr4 139445608 139445886 -16184234 + B4A SINE B4 1 283 -9 8 1648 214 200 0 22 chr4 139445896 139445942 -16184178 + (CCA)n Simple_repeat Simple_repeat 1 45 0 8 1648 335 97 3 0 chr4 139446151 139446211 -16183909 + MIRc SINE MIR 83 143 -133 8 1648 250 279 50 12 chr4 139447079 139447159 -16182961 - MIRc SINE MIR -116 152 70 8 1648 311 231 25 19 chr4 139447246 139447405 -16182715 + (CATA)n Simple_repeat Simple_repeat 1 160 0 8 1648 436 343 11 6 chr4 139447438 139447458 -16182662 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1648 5300 103 106 10 chr4 139447458 139448282 -16181838 - RMER17A2 LTR ERVK 0 906 4 8 1648 436 343 11 6 chr4 139448282 139448440 -16181680 + (CA)n Simple_repeat Simple_repeat 1 160 0 8 1648 274 264 14 0 chr4 139449039 139449111 -16181009 + ID SINE ID 2 74 -150 8 1648 909 154 0 14 chr4 139449940 139450159 -16179961 + CT-rich Low_complexity Low_complexity 1 215 0 8 1648 819 163 7 33 chr4 139450159 139450311 -16179809 - B1_Mur4 SINE Alu -1 149 2 9 1648 1096 103 0 0 chr4 139450346 139450492 -16179628 - B1_Mus1 SINE Alu 0 148 3 9 1648 249 287 18 36 chr4 139450672 139450784 -16179336 + CT-rich Low_complexity Low_complexity 3 112 0 9 1648 224 227 86 57 chr4 139450790 139450860 -16179260 - B1_Mm SINE Alu -7 140 69 9 1648 405 0 0 0 chr4 139451113 139451158 -16178962 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 9 1648 669 261 103 25 chr4 139451158 139451353 -16178767 - ID_B1 SINE B4 -8 216 4 9 1648 293 340 25 45 chr4 139451988 139452145 -16177975 + MIRc SINE MIR 32 185 -83 9 1648 223 204 0 22 chr4 139452861 139452906 -16177214 - B1_Mur2 SINE Alu -55 94 51 9 1648 759 157 0 0 chr4 139452899 139453020 -16177100 + B1_Mur4 SINE Alu 30 150 0 9 1648 471 331 13 0 chr4 139453035 139453192 -16176928 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 9 1648 270 164 0 0 chr4 139453213 139453268 -16176852 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1648 5411 96 15 14 chr4 139453280 139453918 -16176202 + RMER19A LTR ERVK 1 646 -91 9 1648 1381 78 17 0 chr4 139453918 139454098 -16176022 - B2_Mm1t SINE B2 -10 183 1 9 1648 5411 96 15 14 chr4 139454098 139454195 -16175925 + RMER19A LTR ERVK 647 737 0 9 1648 470 348 0 0 chr4 139454203 139454459 -16175661 + (TATG)n Simple_repeat Simple_repeat 1 256 0 9 1648 181 278 0 31 chr4 139454551 139454681 -16175439 + (TATG)n Simple_repeat Simple_repeat 1 126 0 9 1648 254 340 10 0 chr4 139454696 139454793 -16175327 + (TG)n Simple_repeat Simple_repeat 1 98 0 9 1648 383 354 155 4 chr4 139454879 139455137 -16174983 - RMER15 LTR ERVL -4 571 275 9 1648 244 289 132 0 chr4 139455165 139455279 -16174841 - RMER15 LTR ERVL -444 131 3 9 1648 201 178 0 0 chr4 139456216 139456261 -16173859 + CT-rich Low_complexity Low_complexity 2 46 0 9 1648 510 122 0 0 chr4 139456307 139456405 -16173715 + (TC)n Simple_repeat Simple_repeat 1 98 0 9 1648 420 20 0 0 chr4 139456405 139456454 -16173666 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1648 2009 124 101 0 chr4 139457215 139457562 -16172558 - ORR1B1 LTR MaLR -12 382 1 9 1648 289 326 23 0 chr4 139457830 139457962 -16172158 + (TG)n Simple_repeat Simple_repeat 1 135 0 9 1648 576 213 0 0 chr4 139458034 139458161 -16171959 + (TG)n Simple_repeat Simple_repeat 2 128 0 9 1648 550 292 25 40 chr4 139458776 139458976 -16171144 - B4A SINE B4 -95 197 1 9 1648 429 318 19 66 chr4 139459220 139459432 -16170688 - MLT1D LTR MaLR -288 217 16 9 1648 770 253 66 62 chr4 139459545 139459789 -16170331 - B4A SINE B4 0 292 48 9 1648 286 128 0 0 chr4 139459854 139459901 -16170219 - MER4B-int LTR ERV1 -5562 1196 1150 9 1648 505 192 5 53 chr4 139459945 139460132 -16169988 + (CATA)n Simple_repeat Simple_repeat 2 179 0 9 1648 679 198 0 17 chr4 139460150 139460330 -16169790 + (CATA)n Simple_repeat Simple_repeat 4 180 0 9 1648 305 190 17 0 chr4 139460331 139460389 -16169731 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1648 658 203 0 17 chr4 139460394 139460574 -16169546 + (CATA)n Simple_repeat Simple_repeat 4 180 0 9 25 716 170 0 33 chr4 139460596 139460778 -16169342 + (CATA)n Simple_repeat Simple_repeat 4 179 0 9 1649 550 247 11 0 chr4 139460791 139460969 -16169151 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1649 182 150 25 0 chr4 139461290 139461330 -16168790 + C-rich Low_complexity Low_complexity 3 43 0 9 1649 479 278 126 29 chr4 139461765 139461939 -16168181 + B3 SINE B2 2 192 -24 9 1649 320 269 36 27 chr4 139462128 139462239 -16167881 + MIRc SINE MIR 31 142 -126 9 1649 184 218 17 68 chr4 139462430 139462489 -16167631 + L2b LINE L2 3304 3359 -16 9 1649 372 280 38 8 chr4 139463696 139463829 -16166291 + RMER15 LTR ERVL 425 561 -14 9 1649 407 319 40 23 chr4 139464385 139464558 -16165562 - MLT1J LTR MaLR -96 416 241 9 1649 227 348 0 0 chr4 139465087 139465179 -16164941 + GA-rich Low_complexity Low_complexity 2 93 0 9 1649 775 182 7 47 chr4 139465221 139465371 -16164749 - B1_Mur4 SINE Alu -2 148 5 9 1649 679 273 0 0 chr4 139465406 139465556 -16164564 + B3A SINE B2 1 150 -48 9 1649 270 0 0 0 chr4 139465558 139465588 -16164532 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1649 705 282 108 12 chr4 139465739 139465997 -16164123 + B4A SINE B4 1 283 -9 9 1649 259 326 35 62 chr4 139466671 139466815 -16163305 + MIRc SINE MIR 10 149 -119 9 1649 353 309 6 0 chr4 139466915 139467090 -16163030 + CT-rich Low_complexity Low_complexity 1 176 0 9 1649 248 329 6 0 chr4 139467145 139467312 -16162808 + CT-rich Low_complexity Low_complexity 3 170 0 9 1649 216 350 99 11 chr4 139468182 139468344 -16161776 + MIRc SINE MIR 6 181 -81 9 1649 909 210 125 9 chr4 139468381 139468597 -16161523 + B4 SINE B4 50 290 -2 9 1649 194 368 11 0 chr4 139469231 139469318 -16160802 + MIR SINE MIR 124 211 -51 9 1649 200 269 0 0 chr4 139469556 139469608 -16160512 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1649 422 233 0 43 chr4 139469620 139469808 -16160312 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1649 719 281 31 77 chr4 139469814 139470089 -16160031 - B4A SINE B4 0 292 30 9 1649 1069 88 8 4 chr4 139470102 139470353 -16159767 + (TTCC)n Simple_repeat Simple_repeat 1 252 0 9 1649 461 226 0 36 chr4 139470361 139470471 -16159649 - PB1D10 SINE Alu -11 106 1 9 1649 621 101 113 30 chr4 139470802 139470935 -16159185 - URR1A DNA MER1_type -2 224 81 9 1649 341 314 109 0 chr4 139471374 139471511 -16158609 + ID_B1 SINE B4 73 224 0 9 1649 529 202 18 27 chr4 139471617 139471729 -16158391 + PB1D10 SINE Alu 2 112 -5 9 1649 237 275 112 0 chr4 139472179 139472259 -16157861 + MER5A DNA MER1_type 33 121 -68 9 1649 190 81 54 0 chr4 139473397 139473434 -16156686 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1649 978 251 166 0 chr4 139473472 139473707 -16156413 - B4A SINE B4 -18 274 1 9 1649 559 179 13 141 chr4 139473757 139473913 -16156207 - ID_B1 SINE B4 -3 221 86 9 1649 436 297 8 8 chr4 139474336 139474465 -16155655 + B4A SINE B4 137 265 -27 9 1649 846 143 0 0 chr4 139474457 139474583 -16155537 - B1_Mus2 SINE Alu -21 126 1 9 1649 257 302 7 87 chr4 139474672 139474822 -16155298 - B4A SINE B4 -31 134 1 9 1649 354 321 163 1 chr4 139474874 139475098 -16155022 - L1M4 LINE L1 -1494 5150 4895 9 1649 570 197 14 7 chr4 139475279 139475422 -16154698 + CT-rich Low_complexity Low_complexity 1 144 0 9 1649 260 281 135 0 chr4 139475433 139475522 -16154598 - PB1D10 SINE Alu -16 101 1 9 1649 240 224 86 43 chr4 139475614 139475684 -16154436 - ID4_ SINE ID -3 80 8 9 1649 440 246 26 9 chr4 139475693 139475808 -16154312 - PB1D7 SINE Alu -1 119 3 9 1649 1045 138 0 81 chr4 139476077 139476131 -16153989 - B2_Mm2 SINE B2 -13 182 136 9 1649 222 37 0 0 chr4 139476131 139476158 -16153962 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1649 1045 138 0 81 chr4 139476158 139476300 -16153820 - B2_Mm2 SINE B2 -60 135 2 9 1649 237 33 0 0 chr4 139476316 139476346 -16153774 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1649 245 269 15 0 chr4 139476347 139476414 -16153706 - ID SINE ID -150 74 7 9 1649 1143 82 0 20 chr4 139476446 139476596 -16153524 - B1_Mus2 SINE Alu 0 147 1 9 1649 449 278 54 59 chr4 139476859 139476987 -16153133 - Lx9 LINE L1 -11 7633 7510 9 1649 333 0 0 0 chr4 139476987 139477024 -16153096 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1649 449 278 54 59 chr4 139477024 139477117 -16153003 - Lx9 LINE L1 -135 7509 7413 9 1649 220 304 69 115 chr4 139477141 139477271 -16152849 - B4 SINE B4 -166 126 3 9 1649 373 271 95 83 chr4 139477442 139477611 -16152509 + B3A SINE B2 3 173 -25 9 1649 330 301 28 44 chr4 139477855 139478036 -16152084 - L1M4 LINE L1 -5325 1217 1040 9 1649 689 220 21 0 chr4 139478036 139478177 -16151943 + B1_Mur2 SINE Alu 2 145 -4 9 1649 494 315 28 36 chr4 139478221 139478542 -16151578 - L1M4 LINE L1 -5488 1054 665 9 1649 28 29 0 0 chr4 139478605 139478640 -16151480 + AT_rich Low_complexity Low_complexity 1 35 0 9 1649 405 102 0 0 chr4 139478641 139478700 -16151420 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1649 212 260 110 0 chr4 139478726 139478799 -16151321 - L4 LINE RTE -147 1882 1802 9 1649 22 35 0 0 chr4 139478886 139478915 -16151205 + AT_rich Low_complexity Low_complexity 1 29 0 9 1649 227 339 150 29 chr4 139478915 139479088 -16151032 - L1M4 LINE L1 -6071 471 278 9 1649 660 187 4 0 chr4 139479648 139479897 -16150223 + (TG)n Simple_repeat Simple_repeat 1 250 0 9 1649 543 219 0 0 chr4 139479940 139480118 -16150002 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 1649 372 256 12 0 chr4 139480124 139480206 -16149914 - B4A SINE B4 -209 83 1 9 1649 785 288 97 38 chr4 139480344 139480611 -16149509 + B4A SINE B4 9 291 -1 9 1649 489 231 0 0 chr4 139480641 139480814 -16149306 + (CA)n Simple_repeat Simple_repeat 2 174 0 9 1649 1059 201 15 5 chr4 139481297 139481502 -16148618 - B3 SINE B2 -8 208 2 9 1649 709 264 18 55 chr4 139481505 139481725 -16148395 - B4A SINE B4 -73 219 8 9 1649 438 245 189 21 chr4 139482706 139482944 -16147176 + B4 SINE B4 1 278 -14 9 1649 2426 138 7 38 chr4 139483364 139483377 -16146743 - Lx4B LINE L1 -1 7057 7045 9 1649 351 0 0 0 chr4 139483377 139483416 -16146704 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 9 1649 2426 138 7 38 chr4 139483416 139483824 -16146296 - Lx4B LINE L1 -14 7044 6649 9 1649 1190 54 0 7 chr4 139483851 139484000 -16146120 - B1_Mus1 SINE Alu 0 148 1 9 1649 638 232 134 11 chr4 139484289 139484468 -16145652 + B4A SINE B4 35 235 -57 9 1649 394 123 0 151 chr4 139484621 139484707 -16145413 + MTEa LTR MaLR 2 74 -305 9 1649 180 0 0 0 chr4 139484710 139484730 -16145390 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1649 373 226 21 11 chr4 139484802 139484896 -16145224 + MTEa LTR MaLR 284 378 -1 9 1649 420 179 12 12 chr4 139485003 139485088 -16145032 + PB1D7 SINE Alu 26 110 -10 9 1649 230 362 48 109 chr4 139485092 139485467 -16144653 + MLT1G3 LTR MaLR 81 432 -147 9 1649 545 180 0 6 chr4 139485683 139485856 -16144264 + (CAG)n Simple_repeat Simple_repeat 2 173 0 9 1649 308 390 0 30 chr4 139485885 139486054 -16144066 + HAL1-2a_MD LINE L1 2345 2508 -516 9 1649 216 86 0 0 chr4 139486061 139486096 -16144024 + (CAG)n Simple_repeat Simple_repeat 1 35 0 9 1649 690 256 65 30 chr4 139486399 139486600 -16143520 + ID_B1 SINE B4 2 209 -15 9 1649 1006 90 5 43 chr4 139486603 139486789 -16143331 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1649 264 59 0 0 chr4 139486791 139486825 -16143295 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 1 1649 1181 238 71 23 chr4 139487081 139487391 -16142729 + MTEa LTR MaLR 36 360 -19 1 1649 240 35 0 0 chr4 139488284 139488313 -16141807 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1649 1159 117 49 22 chr4 139488329 139488512 -16141608 - B2_Mm2 SINE B2 -7 188 1 1 1649 744 271 46 20 chr4 139488594 139488909 -16141211 - ZP3AR Satellite Satellite -96 323 1 1 1649 801 276 102 4 chr4 139489852 139490107 -16140013 - RMER15 LTR ERVL -15 560 281 1 1649 415 68 54 0 chr4 139490261 139490335 -16139785 + (TCTCTG)n Simple_repeat Simple_repeat 2 79 0 1 1649 386 217 12 12 chr4 139491977 139492061 -16138059 + MTEb LTR MaLR 7 90 -289 1 1649 234 150 0 0 chr4 139492140 139492180 -16137940 + (ATG)n Simple_repeat Simple_repeat 1 40 0 1 1649 426 267 22 22 chr4 139492241 139492375 -16137745 - B1F SINE Alu -3 146 13 1 1649 210 255 0 0 chr4 139492427 139492474 -16137646 - B2_Mm2 SINE B2 -148 47 1 1 1649 329 82 0 32 chr4 139492503 139492566 -16137554 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 1 1649 823 213 119 11 chr4 139492632 139492817 -16137303 - B3 SINE B2 -6 210 6 1 1649 539 300 86 29 chr4 139492845 139493089 -16137031 - L1M4 LINE L1 -660 5518 5261 1 1649 721 131 23 26 chr4 139493127 139493395 -16136725 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 1649 657 262 54 72 chr4 139493534 139493756 -16136364 - B4A SINE B4 -74 218 1 1 1649 234 184 20 0 chr4 139493817 139493866 -16136254 + CT-rich Low_complexity Low_complexity 1 50 0 1 1649 342 254 76 48 chr4 139493980 139494163 -16135957 - MTEa LTR MaLR -21 398 221 1 1649 256 167 0 81 chr4 139494163 139494287 -16135833 + (CAGAGA)n Simple_repeat Simple_repeat 5 118 0 1 1649 244 231 19 0 chr4 139494339 139494443 -16135677 + GA-rich Low_complexity Low_complexity 2 107 0 1 1649 255 125 0 0 chr4 139494422 139494462 -16135658 + (GGA)n Simple_repeat Simple_repeat 2 41 0 1 1649 336 335 104 63 chr4 139494625 139494843 -16135277 + MER2 DNA MER2_type 39 278 -67 1 1649 583 264 7 28 chr4 139494843 139494987 -16135133 - B1F SINE Alu -5 144 4 1 1649 336 335 104 63 chr4 139494987 139495055 -16135065 + MER2 DNA MER2_type 279 337 -8 1 1649 437 321 37 67 chr4 139495060 139495360 -16134760 + B4 SINE B4 2 292 0 1 1649 324 250 65 0 chr4 139495362 139495454 -16134666 + (CATG)n Simple_repeat Simple_repeat 3 100 0 1 1649 186 280 0 0 chr4 139495505 139495580 -16134540 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1649 270 116 0 0 chr4 139495623 139495666 -16134454 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 1 1649 234 371 0 0 chr4 139495667 139495756 -16134364 + L1MC4 LINE L1 6743 6831 -1211 1 1649 948 222 36 23 chr4 139495861 139495933 -16134187 + ID SINE ID 1 72 -152 1 1649 201 39 0 0 chr4 139495933 139495959 -16134161 + (CCA)n Simple_repeat Simple_repeat 3 28 0 1 1649 948 222 36 23 chr4 139495959 139496107 -16134013 + ID_B1 SINE B4 73 223 -1 1 1649 299 269 0 0 chr4 139496182 139496354 -16133766 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1649 481 300 6 0 chr4 139496361 139496593 -16133527 + (CA)n Simple_repeat Simple_repeat 1 233 0 1 1649 224 329 18 12 chr4 139496523 139496689 -16133431 + (CTCA)n Simple_repeat Simple_repeat 4 170 0 1 1649 521 296 0 6 chr4 139496646 139496823 -16133297 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1649 270 260 51 13 chr4 139496999 139497077 -16133043 - RSINE1 SINE B4 -83 82 2 1 1649 1181 106 0 6 chr4 139497212 139497393 -16132727 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1649 644 262 176 5 chr4 139497496 139497684 -16132436 - ID_B1 SINE B4 0 224 5 1 1649 242 316 25 117 chr4 139497774 139497819 -16132301 - B2_Mm1t SINE B2 -13 180 141 1 1649 372 22 0 0 chr4 139497819 139497864 -16132256 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1649 651 231 14 8 chr4 139497864 139498015 -16132105 - B3A SINE B2 -47 151 2 1 1649 5953 129 40 16 chr4 139498274 139499210 -16130910 + RMER17B LTR ERVK 1 958 0 1 1649 243 318 59 0 chr4 139499314 139499399 -16130721 - MIRb SINE MIR -72 196 107 1 1649 545 249 92 29 chr4 139499537 139499711 -16130409 - MamRep434 DNA TcMar -219 207 23 1 1649 420 324 21 0 chr4 139499849 139499991 -16130129 - MamRep434 DNA TcMar -131 295 151 1 1649 1891 21 185 100 chr4 139500089 139500408 -16129712 + ORR1A1 LTR MaLR 1 346 0 1 1649 201 62 55 110 chr4 139500477 139500550 -16129570 + (CAGTC)n Simple_repeat Simple_repeat 5 73 0 2 1649 1073 287 56 7 chr4 139500554 139500842 -16129278 + MTEa LTR MaLR 19 320 -59 3 1649 1411 211 77 24 chr4 139500847 139501187 -16128933 + MTD LTR MaLR 48 405 -14 4 1649 350 192 0 27 chr4 139501184 139501259 -16128861 + MTEa LTR MaLR 305 377 -2 3 1649 264 266 33 58 chr4 139501823 139501916 -16128204 + MLT1A1 LTR MaLR 272 401 -7 5 1649 245 263 79 0 chr4 139502130 139502206 -16127914 + L1MC3 LINE L1 7249 7330 -455 6 1649 716 227 6 35 chr4 139502211 139502380 -16127740 - MTEb LTR MaLR -8 371 208 7 1649 307 171 66 0 chr4 139502368 139502444 -16127676 - MTE2b LTR MaLR -114 265 185 8 1649 281 178 42 3 chr4 139502417 139502516 -16127604 - MTEb LTR MaLR -114 265 153 7 1649 301 200 17 0 chr4 139502501 139502561 -16127559 - MTEb LTR MaLR -114 265 205 7 1649 301 200 17 0 chr4 139502546 139502606 -16127514 - MTEb LTR MaLR -114 265 205 7 1649 306 143 36 0 chr4 139502591 139502647 -16127473 - MTEb LTR MaLR -114 265 208 7 1649 288 184 66 0 chr4 139502635 139502711 -16127409 - MTE2b LTR MaLR -114 265 185 9 1649 293 169 34 0 chr4 139502680 139502739 -16127381 - MTE2b LTR MaLR -114 265 205 9 1649 1072 213 5 5 chr4 139502728 139502940 -16127180 - MTEa LTR MaLR -119 260 49 1 1649 272 366 100 12 chr4 139502944 139503265 -16126855 + L1MC3 LINE L1 7342 7690 -95 6 1649 631 248 7 32 chr4 139503323 139503477 -16126643 + B3A SINE B2 2 151 -47 1 1649 345 310 26 0 chr4 139503547 139503663 -16126457 + PB1D9 SINE Alu 2 120 0 1 1649 483 245 100 20 chr4 139504161 139504311 -16125809 - B4 SINE B4 -129 163 2 1 1649 183 329 0 38 chr4 139504703 139504782 -16125338 + L3 LINE CR1 71 146 -4343 1 1649 294 250 0 26 chr4 139504880 139504958 -16125162 + L1MB3 LINE L1 6107 6182 -1 1 1649 375 23 0 0 chr4 139505333 139505377 -16124743 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1649 318 270 0 0 chr4 139505377 139505708 -16124412 + (TG)n Simple_repeat Simple_repeat 1 331 0 1 1649 702 0 0 0 chr4 139505708 139505786 -16124334 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1649 390 316 17 25 chr4 139505806 139505926 -16124194 - B4A SINE B4 -173 119 1 1 1649 795 50 0 0 chr4 139506742 139506842 -16123278 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 1649 594 39 0 0 chr4 139506856 139506933 -16123187 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1649 345 252 276 0 chr4 139506999 139507126 -16122994 - B4A SINE B4 -124 168 7 2 1649 267 358 30 36 chr4 139507295 139507463 -16122657 + MIR SINE MIR 13 179 -83 2 1649 274 248 98 27 chr4 139507487 139507599 -16122521 - MLT1H LTR MaLR -45 504 385 2 1649 614 256 159 45 chr4 139507752 139507997 -16122123 + B4A SINE B4 2 274 -18 2 1649 402 139 0 0 chr4 139508055 139508127 -16121993 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1649 383 291 0 18 chr4 139508269 139508381 -16121739 + PB1 SINE Alu 1 110 -17 2 1649 3302 30 0 132 chr4 139508763 139509265 -16120855 + RLTR10C LTR ERVK 1 436 0 2 1649 2771 50 0 0 chr4 139509265 139509608 -16120512 + MMERVK10C-int LTR ERVK 1 343 -7238 2 1649 883 143 4 177 chr4 139509606 139509877 -16120243 + MMERVK10C-int LTR ERVK 729 952 -6629 2 1649 638 261 154 93 chr4 139509967 139510365 -16119755 + MMERVK10C-int LTR ERVK 2079 2425 -4819 2 1649 310 155 17 0 chr4 139510337 139510395 -16119725 + MMERVK10C-int LTR ERVK 1721 1779 -5627 2 1649 329 148 91 0 chr4 139510402 139510490 -16119630 + MMERVK10C-int LTR ERVK 1885 1980 -5601 2 1649 4010 36 18 0 chr4 139510471 139510967 -16119153 + MMERVK10C-int LTR ERVK 2552 3056 -4525 2 1649 24609 7 0 0 chr4 139510967 139513756 -16116364 + MMERVK10C-int LTR ERVK 4793 7581 0 2 1649 3302 30 0 132 chr4 139513756 139514258 -16115862 + RLTR10C LTR ERVK 1 436 0 2 1649 305 247 198 12 chr4 139514395 139514481 -16115639 + B1F2 SINE Alu 11 112 -37 3 1649 1055 188 38 14 chr4 139514481 139514633 -16115487 + B3 SINE B2 2 153 -63 3 1649 405 0 0 0 chr4 139514633 139514678 -16115442 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1649 1055 188 38 14 chr4 139514678 139514735 -16115385 + B3 SINE B2 154 216 0 3 1649 314 321 52 44 chr4 139515282 139515451 -16114669 - L1MEg LINE L1 -4103 2139 2040 3 1649 230 0 0 32 chr4 139515723 139515754 -16114366 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1649 400 304 48 0 chr4 139515789 139515914 -16114206 - ID_B1 SINE B4 -13 211 81 3 1649 394 261 8 87 chr4 139517054 139517180 -16112940 - PB1D10 SINE Alu -1 116 1 3 1649 854 243 5 26 chr4 139517180 139517265 -16112855 - ID SINE ID -143 81 1 3 1649 3510 37 12 2 chr4 139517294 139517726 -16112394 - RLTR10C LTR ERVK 0 436 1 3 1649 339 354 60 21 chr4 139518163 139518446 -16111674 + L1ME4a LINE L1 5750 6043 -81 3 1649 281 297 123 15 chr4 139519247 139519377 -16110743 + MER117 DNA MER1_type 27 170 -27 4 1649 354 236 0 0 chr4 139524321 139524393 -16105727 + MIR SINE MIR 50 121 -87 4 1649 639 60 0 0 chr4 139524801 139524885 -16105235 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1649 294 311 44 0 chr4 139524899 139524989 -16105131 - RSINE1 SINE B4 -31 134 41 4 1649 3333 23 0 12 chr4 139525199 139525600 -16104520 + MTA_Mm LTR MaLR 1 396 0 4 1649 298 276 122 0 chr4 139527121 139527219 -16102901 + PB1D7 SINE Alu 3 112 -8 4 1649 273 315 13 7 chr4 139527241 139527391 -16102729 + (CA)n Simple_repeat Simple_repeat 1 151 0 4 1649 427 305 12 0 chr4 139527417 139527584 -16102536 + (CA)n Simple_repeat Simple_repeat 2 170 0 4 1649 198 0 0 0 chr4 139527672 139527694 -16102426 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1649 249 352 7 0 chr4 139527750 139527889 -16102231 + (CA)n Simple_repeat Simple_repeat 1 140 0 4 1649 222 37 0 0 chr4 139528388 139528415 -16101705 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 1649 781 86 30 24 chr4 139528415 139528582 -16101538 + (TCTCTG)n Simple_repeat Simple_repeat 6 173 0 4 1649 1262 214 10 59 chr4 139528593 139528896 -16101224 - B4A SINE B4 0 292 5 5 1649 649 218 78 66 chr4 139529837 139530046 -16100074 - B3 SINE B2 0 216 3 5 1649 636 227 39 7 chr4 139530092 139530247 -16099873 - B3A SINE B2 -20 178 19 5 1649 262 300 25 0 chr4 139531357 139531437 -16098683 - MIRb SINE MIR -16 252 171 5 1649 228 149 0 0 chr4 139531632 139531679 -16098441 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1649 246 62 0 0 chr4 139531818 139531850 -16098270 + (AGGGGG)n Simple_repeat Simple_repeat 2 33 0 5 1649 623 272 100 33 chr4 139532053 139532323 -16097797 + B4A SINE B4 1 288 -4 5 1649 342 0 0 0 chr4 139532358 139532396 -16097724 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1649 240 277 123 0 chr4 139533251 139533316 -16096804 + L2b LINE L2 3302 3374 -1 5 1649 707 267 97 11 chr4 139533806 139534075 -16096045 + B4 SINE B4 1 292 0 5 1649 228 226 0 0 chr4 139534075 139534137 -16095983 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1649 223 325 46 11 chr4 139534532 139534619 -16095501 - MIRb SINE MIR -72 196 107 6 1649 475 260 126 56 chr4 139535498 139535767 -16094353 + B4A SINE B4 2 289 -3 6 1649 282 342 4 0 chr4 139535773 139536055 -16094065 + (CATA)n Simple_repeat Simple_repeat 1 283 0 6 1649 995 92 31 0 chr4 139536460 139536723 -16093397 + (TCCA)n Simple_repeat Simple_repeat 1 271 0 6 1649 286 329 57 25 chr4 139537059 139537218 -16092902 - LTR16A LTR ERVL -59 392 229 6 1649 568 294 60 28 chr4 139538077 139538259 -16091861 + RMER30 DNA MER1_type 13 200 -2 6 1649 189 0 0 0 chr4 139538446 139538467 -16091653 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 6 1649 193 390 24 48 chr4 139538774 139538941 -16091179 + L2a LINE L2 3004 3166 -260 6 1649 231 36 0 0 chr4 139538966 139538994 -16091126 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1649 563 144 32 0 chr4 139538994 139539119 -16091001 + (TA)n Simple_repeat Simple_repeat 1 129 0 7 1649 472 249 119 78 chr4 139539119 139539330 -16090790 - B3A SINE B2 -2 214 1 7 1649 29 0 0 0 chr4 139539332 139539361 -16090759 + AT_rich Low_complexity Low_complexity 1 29 0 7 1649 1068 76 0 14 chr4 139539361 139539507 -16090613 - B1_Mus1 SINE Alu 0 148 5 7 1649 703 242 12 18 chr4 139539819 139539983 -16090137 + B3 SINE B2 2 164 -52 7 1649 988 42 28 0 chr4 139539983 139540127 -16089993 + (CAGA)n Simple_repeat Simple_repeat 1 148 0 7 1649 201 417 17 0 chr4 139540552 139540667 -16089453 - MIRb SINE MIR -105 163 47 7 1649 602 264 55 0 chr4 139540749 139540890 -16089230 + L1M4 LINE L1 5278 5423 -751 7 1649 567 0 0 0 chr4 139540890 139540953 -16089167 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 7 1649 602 264 55 0 chr4 139540953 139541012 -16089108 + L1M4 LINE L1 5424 5488 -686 7 1649 727 213 20 0 chr4 139541019 139541169 -16088951 + RSINE1 SINE B4 8 160 -5 7 1649 583 262 0 7 chr4 139541230 139541372 -16088748 + ID_B1 SINE B4 83 223 -1 8 1649 643 122 9 9 chr4 139541480 139541496 -16088624 + (TC)n Simple_repeat Simple_repeat 1 16 0 8 1649 519 17 0 0 chr4 139541496 139541556 -16088564 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 8 1649 643 122 9 9 chr4 139541556 139541580 -16088540 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 1649 1329 73 0 0 chr4 139541580 139541758 -16088362 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 8 1649 643 122 9 9 chr4 139541758 139541832 -16088288 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 1649 780 179 38 6 chr4 139541832 139542008 -16088112 - B2_Mm2 SINE B2 -19 174 1 8 1649 1309 144 4 26 chr4 139542013 139542241 -16087879 + URR1B DNA MER1_type 3 225 0 8 1649 1230 162 18 5 chr4 139542697 139542914 -16087206 - URR1A DNA MER1_type -6 220 1 8 1649 253 376 45 0 chr4 139543456 139543589 -16086531 + MLT1J1 LTR MaLR 24 162 -282 8 1649 777 205 67 46 chr4 139543611 139543805 -16086315 + ID_B1 SINE B4 1 198 -26 9 1649 200 264 0 0 chr4 139544299 139544352 -16085768 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1649 414 215 16 33 chr4 139544430 139544613 -16085507 + (TATG)n Simple_repeat Simple_repeat 1 180 0 9 1649 261 286 0 0 chr4 139544618 139544681 -16085439 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1649 464 272 113 26 chr4 139545613 139545764 -16084356 - RSINE1 SINE B4 0 165 2 9 1649 1187 100 0 11 chr4 139545793 139545975 -16084145 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1649 556 200 26 9 chr4 139546009 139546125 -16083995 + B3A SINE B2 1 118 -80 9 1649 1378 127 28 164 chr4 139546585 139546762 -16083358 + RMER17C LTR ERVK 36 183 -227 9 1649 985 98 11 23 chr4 139546762 139546939 -16083181 + (TTCTC)n Simple_repeat Simple_repeat 5 179 0 9 1649 1378 127 28 164 chr4 139546939 139547011 -16083109 + RMER17C LTR ERVK 184 234 -176 9 1649 1112 56 21 0 chr4 139547011 139547154 -16082966 - B1_Mus2 SINE Alu 0 147 2 9 1649 1378 127 28 164 chr4 139547154 139547337 -16082783 + RMER17C LTR ERVK 235 410 0 9 1649 2230 136 15 20 chr4 139547377 139547768 -16082352 + ORR1B1 LTR MaLR 5 393 -1 1 1649 222 224 17 0 chr4 139548069 139548127 -16081993 - ID4 SINE ID -14 69 11 1 1649 236 196 20 0 chr4 139548133 139548184 -16081936 - PB1 SINE Alu 0 127 76 1 1649 718 247 35 45 chr4 139548183 139548382 -16081738 - B3A SINE B2 0 198 2 1 1649 332 256 36 12 chr4 139548382 139548460 -16081660 - PB1D10 SINE Alu -37 80 1 1 1649 22 0 0 0 chr4 139548520 139548542 -16081578 + AT_rich Low_complexity Low_complexity 1 22 0 1 1649 467 229 29 0 chr4 139548553 139548658 -16081462 + PB1D10 SINE Alu 3 110 -7 1 1649 243 175 0 0 chr4 139548671 139548728 -16081392 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1649 211 206 25 0 chr4 139548898 139548949 -16081171 - MIRm SINE MIR -105 157 105 1 1649 449 141 12 0 chr4 139549329 139549414 -16080706 + G-rich Low_complexity Low_complexity 3 88 0 1 1649 280 298 31 31 chr4 139549852 139549949 -16080171 + PB1D10 SINE Alu 21 117 0 1 1649 376 273 25 49 chr4 139549965 139550127 -16079993 + RSINE1 SINE B4 2 159 -6 1 1649 25 0 0 0 chr4 139550127 139550152 -16079968 + AT_rich Low_complexity Low_complexity 1 25 0 1 1649 776 158 29 0 chr4 139550325 139550464 -16079656 + B1_Mus2 SINE Alu 5 147 0 1 1649 602 298 6 6 chr4 139550548 139550707 -16079413 - ID_B1 SINE B4 -64 160 2 1 1649 681 276 26 0 chr4 139551308 139551464 -16078656 + B3A SINE B2 2 161 -37 1 1649 240 86 0 0 chr4 139551475 139551510 -16078610 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 1 1649 299 113 0 19 chr4 139552259 139552313 -16077807 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1649 608 203 3 28 chr4 139552364 139552692 -16077428 + (TA)n Simple_repeat Simple_repeat 1 319 0 1 1649 677 298 96 0 chr4 139552749 139552957 -16077163 - B4A SINE B4 -8 284 57 1 1649 271 219 27 27 chr4 139553182 139553257 -16076863 + MER34A LTR ERV1 7 81 -490 1 1649 341 252 0 144 chr4 139554019 139554158 -16075962 - PB1D9 SINE Alu -1 119 1 1 1649 2237 149 45 12 chr4 139554322 139554724 -16075396 - MTC LTR MaLR -3 418 4 1 1649 207 125 0 0 chr4 139555219 139555259 -16074861 + (GGGGA)n Simple_repeat Simple_repeat 1 40 0 1 1649 1107 136 136 0 chr4 139555679 139555877 -16074243 - URR1B DNA MER1_type 0 225 1 1 1649 245 326 22 0 chr4 139557340 139557451 -16072669 - MIRm SINE MIR -123 153 39 1 1649 204 216 0 89 chr4 139557429 139557485 -16072635 + MIRc SINE MIR 21 71 -197 1 1649 246 288 12 88 chr4 139557648 139557728 -16072392 + BC1_Mm scRNA scRNA 15 88 -64 1 1649 190 388 71 10 chr4 139558753 139558852 -16071268 + L2c LINE L2 3269 3373 -14 1 1649 197 340 0 0 chr4 139558920 139558973 -16071147 + MIRb SINE MIR 26 78 -190 1 1649 770 205 12 47 chr4 139559120 139559289 -16070831 - ID_B1 SINE B4 -54 170 8 1 1649 278 322 16 40 chr4 139561252 139561378 -16068742 - RSINE1 SINE B4 0 165 43 1 1649 567 0 0 0 chr4 139561389 139561452 -16068668 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1649 189 200 0 0 chr4 139561483 139561518 -16068602 + MIRc SINE MIR 113 147 -121 1 1649 21 0 0 0 chr4 139561780 139561801 -16068319 + AT_rich Low_complexity Low_complexity 1 21 0 1 1649 191 333 0 44 chr4 139562205 139562296 -16067824 - MIR SINE MIR -89 119 33 1 1649 240 250 0 45 chr4 139562497 139562564 -16067556 + B3 SINE B2 4 67 -149 1 1649 558 243 88 0 chr4 139562507 139562643 -16067477 + RSINE1 SINE B4 12 159 -6 1 1649 221 57 29 0 chr4 139563130 139563165 -16066955 + (AGGGGG)n Simple_repeat Simple_repeat 5 40 0 1 1649 580 248 12 160 chr4 139563304 139563554 -16066566 + MTEb LTR MaLR 3 215 -164 1 1649 600 176 29 29 chr4 139563554 139563729 -16066391 + C-rich Low_complexity Low_complexity 2 176 0 1 1649 238 213 0 0 chr4 139564145 139564192 -16065928 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1649 225 0 0 0 chr4 139564240 139564265 -16065855 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1649 780 128 32 0 chr4 139564460 139564585 -16065535 - B1_Mur4 SINE Alu -21 129 1 1 1649 312 243 8 126 chr4 139564474 139564601 -16065519 - MT2B LTR ERVL -337 264 153 1 1649 1174 75 0 0 chr4 139564958 139565105 -16065015 + B1_Mus1 SINE Alu 2 148 0 1 1649 225 277 99 0 chr4 139565122 139565212 -16064908 + MLT1B LTR MaLR 81 180 -210 1 1649 215 239 225 0 chr4 139565212 139565283 -16064837 + PB1D10 SINE Alu 1 87 -30 1 1649 737 258 105 47 chr4 139565283 139565560 -16064560 + MTEb LTR MaLR 1 293 -86 1 1649 504 0 0 0 chr4 139567361 139567417 -16062703 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1649 339 241 51 0 chr4 139568376 139568455 -16061665 - ID4_ SINE ID 0 83 1 1 1649 2322 244 110 43 chr4 139568712 139569346 -16060774 - Lx6 LINE L1 -26 7434 6758 1 1649 350 227 90 25 chr4 139569350 139569472 -16060648 - MIR SINE MIR -116 146 17 1 1649 466 282 14 18 chr4 139569878 139570075 -16060045 + MIRb SINE MIR 8 206 -62 1 1649 1381 196 170 143 chr4 139571012 139571531 -16058589 + MT2A LTR ERVL 1 533 0 1 1649 10085 150 81 16 chr4 139571531 139573647 -16056473 + MERVL_2A-int LTR ERVL 1 2255 -3506 1 1649 282 116 0 0 chr4 139573671 139573714 -16056406 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1649 650 210 0 18 chr4 139573714 139573884 -16056236 + (TA)n Simple_repeat Simple_repeat 2 168 0 1 1649 1604 135 0 16 chr4 139573904 139574153 -16055967 + MERVL_2A-int LTR ERVL 2265 2509 -3252 1 1649 11883 158 36 7 chr4 139574138 139576178 -16053942 + MERVL_2A-int LTR ERVL 3586 5685 -76 1 1649 289 263 13 0 chr4 139576181 139576257 -16053863 + MERVL_2A-int LTR ERVL 5619 5695 -66 1 1649 693 258 45 136 chr4 139576259 139576488 -16053632 + MT2A LTR ERVL 3 220 -313 1 1649 531 0 0 0 chr4 139576488 139576547 -16053573 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1649 693 229 29 64 chr4 139576547 139576678 -16053442 + MT2A LTR ERVL 221 460 -141 1 1649 261 0 0 0 chr4 139576705 139576734 -16053386 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1649 237 57 29 0 chr4 139576739 139576774 -16053346 + MT2A LTR ERVL 498 533 0 1 1649 236 331 73 7 chr4 139577191 139577328 -16052792 - MIRb SINE MIR -16 252 107 1 1649 468 237 28 77 chr4 139577949 139578164 -16051956 - MTE2b LTR MaLR -14 405 190 1 1649 1075 194 48 19 chr4 139580485 139580695 -16049425 + B3 SINE B2 1 216 0 1 1649 476 237 35 17 chr4 139580736 139580852 -16049268 + B4 SINE B4 3 120 -172 1 1649 243 0 0 0 chr4 139580922 139580949 -16049171 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1649 594 0 0 0 chr4 139580949 139581014 -16049106 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1649 587 280 0 0 chr4 139581022 139581154 -16048966 - ID_B1 SINE B4 -4 220 89 1 1649 262 209 0 45 chr4 139582480 139582557 -16047563 + MLT1G LTR MaLR 484 578 -13 1 1649 710 258 85 47 chr4 139584281 139584493 -16045627 + ID_B1 SINE B4 2 221 -3 1 1649 214 360 52 17 chr4 139585072 139585188 -16044932 - MIR SINE MIR -57 151 32 1 1649 182 365 75 71 chr4 139585557 139585796 -16044324 - L2b LINE L2 -2 3373 3134 1 1649 769 110 14 0 chr4 139586331 139586476 -16043644 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 1649 396 167 0 0 chr4 139587170 139587242 -16042878 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1649 326 225 23 17 chr4 139587369 139587545 -16042575 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 1 1649 264 206 15 31 chr4 139587599 139587729 -16042391 + (TCCA)n Simple_repeat Simple_repeat 4 131 0 1 1649 422 313 47 0 chr4 139587800 139587950 -16042170 - L1M5 LINE L1 -604 5560 5404 1 1649 332 208 26 53 chr4 139587999 139588075 -16042045 + ID4 SINE ID 2 75 -8 1 1649 553 244 0 0 chr4 139588178 139588293 -16041827 - ID_B1 SINE B4 -29 195 81 1 1649 436 360 40 12 chr4 139588499 139588752 -16041368 - L1M5 LINE L1 -1078 5068 4809 1 1649 269 300 100 0 chr4 139588808 139588928 -16041192 - L2b LINE L2 -599 2820 2689 1 1650 215 179 36 0 chr4 139591737 139591793 -16038327 + T-rich Low_complexity Low_complexity 3 60 0 1 1650 214 250 0 35 chr4 139592938 139592996 -16037124 + C-rich Low_complexity Low_complexity 3 58 0 1 1650 197 321 52 60 chr4 139593518 139593634 -16036486 - L2 LINE L2 -3243 176 62 1 1650 325 219 68 0 chr4 139593909 139593982 -16036138 + MER63D DNA AcHobo 7 84 -977 1 1650 1638 148 212 3 chr4 139594172 139594511 -16035609 + RMER17C LTR ERVK 1 410 0 1 1650 451 252 10 10 chr4 139595742 139595846 -16034274 - PB1D9 SINE Alu -14 106 3 1 1650 230 368 35 9 chr4 139596118 139596233 -16033887 + C-rich Low_complexity Low_complexity 1 118 0 1 1650 1391 182 106 62 chr4 139596320 139596742 -16033378 - ORR1D1 LTR MaLR 0 394 1 1 1650 323 272 0 0 chr4 139596872 139596953 -16033167 - ID2 SINE ID -2 81 1 1 1650 255 292 121 21 chr4 139596975 139597115 -16033005 + MLT1E3 LTR MaLR 422 575 -49 1 1650 1194 94 0 0 chr4 139597400 139597570 -16032550 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 1 1650 1085 118 11 22 chr4 139597570 139597752 -16032368 - B2_Mm2 SINE B2 -14 181 2 1 1650 265 301 48 66 chr4 139597774 139597801 -16032319 + MER33 DNA MER1_type 101 121 -203 1 1650 1162 209 5 5 chr4 139597801 139598013 -16032107 + B3 SINE B2 2 213 -3 1 1650 282 295 56 36 chr4 139598013 139598213 -16031907 + MER33 DNA MER1_type 122 324 0 1 1650 244 274 151 0 chr4 139598220 139598293 -16031827 - MIR SINE MIR -60 148 65 1 1650 418 322 0 0 chr4 139598375 139598521 -16031599 + (CA)n Simple_repeat Simple_repeat 1 146 0 1 1650 249 169 0 0 chr4 139598535 139598594 -16031526 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1650 861 227 72 5 chr4 139599232 139599440 -16030680 - ID_B1 SINE B4 -2 222 1 1 1650 619 209 0 164 chr4 139599477 139599654 -16030466 - B1_Mur1 SINE Alu -1 148 1 1 1650 223 364 20 0 chr4 139599654 139599753 -16030367 + C-rich Low_complexity Low_complexity 6 106 0 1 1650 215 381 11 40 chr4 139600667 139600842 -16029278 + MIRc SINE MIR 93 262 -6 1 1650 396 208 7 26 chr4 139601822 139601975 -16028145 + CT-rich Low_complexity Low_complexity 1 150 0 1 1650 607 207 7 62 chr4 139601975 139602119 -16028001 + ORR1A2 LTR MaLR 1 136 -191 1 1650 1536 67 5 0 chr4 139602353 139602562 -16027558 + ORR1A2 LTR MaLR 118 327 0 1 1650 222 191 0 0 chr4 139602562 139602609 -16027511 + CT-rich Low_complexity Low_complexity 4 50 0 1 1650 189 200 43 22 chr4 139602638 139602684 -16027436 + L2b LINE L2 3329 3375 0 2 1650 603 0 0 0 chr4 139603427 139603494 -16026626 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1650 586 229 84 0 chr4 139603498 139603629 -16026491 - RSINE1 SINE B4 -21 144 3 2 1650 260 354 10 0 chr4 139603661 139603757 -16026363 + MER5A DNA MER1_type 1 97 -92 2 1650 359 303 0 33 chr4 139605236 139605417 -16024703 + C-rich Low_complexity Low_complexity 5 179 0 2 1650 756 313 39 25 chr4 139605749 139606034 -16024086 + B4A SINE B4 2 290 -2 2 1650 552 141 10 10 chr4 139606221 139606321 -16023799 - ORR1C2 LTR MaLR -284 100 1 2 1650 349 300 16 31 chr4 139606401 139606550 -16023570 + MIRb SINE MIR 33 172 -36 2 1650 2108 138 94 8 chr4 139606650 139606822 -16023298 + ORR1C2 LTR MaLR 1 185 -199 2 1650 387 0 0 0 chr4 139606822 139606865 -16023255 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 1650 2108 138 94 8 chr4 139606865 139607043 -16023077 + ORR1C2 LTR MaLR 186 381 -3 2 1650 1581 90 107 122 chr4 139607043 139607371 -16022749 + ORR1A3 LTR MaLR 1 323 -3 2 1650 186 327 0 0 chr4 139607656 139607708 -16022412 + MIRb SINE MIR 118 169 -99 2 1650 358 315 32 8 chr4 139608426 139608596 -16021524 + MIR SINE MIR 1 183 -85 2 1650 438 108 0 0 chr4 139609668 139609733 -16020387 + (CAGCC)n Simple_repeat Simple_repeat 1 65 0 2 1650 1394 168 0 13 chr4 139611043 139611272 -16018848 - URR1A DNA MER1_type 0 226 1 2 1650 2510 69 25 0 chr4 139611450 139611769 -16018351 + ORR1A2 LTR MaLR 1 327 0 2 1650 1489 201 13 73 chr4 139612336 139612733 -16017387 + ORR1D1 LTR MaLR 2 421 0 2 1650 268 305 12 12 chr4 139613066 139613149 -16016971 + B4A SINE B4 1 83 -209 2 1650 478 290 50 28 chr4 139613146 139613330 -16016790 + B3A SINE B2 26 209 -7 2 1650 288 127 0 0 chr4 139613370 139613425 -16016695 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 1650 649 171 69 22 chr4 139613448 139613604 -16016516 + B3 SINE B2 3 145 -50 2 1650 224 0 65 0 chr4 139613604 139613635 -16016485 + (CTAA)n Simple_repeat Simple_repeat 4 36 0 2 1650 546 255 19 92 chr4 139613635 139613685 -16016435 + B2_Mm2 SINE B2 146 194 -1 2 1650 408 326 102 15 chr4 139613929 139614253 -16015867 + L1MB8 LINE L1 4955 5306 -840 2 1650 406 187 113 6 chr4 139614441 139614549 -16015571 + PB1D7 SINE Alu 1 119 -1 2 1650 435 330 104 39 chr4 139614661 139614866 -16015254 + L1MB8 LINE L1 5622 5847 -331 2 1650 1390 158 143 43 chr4 139614866 139615237 -16014883 + RMER17C LTR ERVK 3 410 0 2 1650 435 330 104 39 chr4 139615237 139615340 -16014780 + L1MB8 LINE L1 5848 5950 -228 2 1650 1062 109 0 26 chr4 139615389 139615540 -16014580 - B1_Mus1 SINE Alu 0 148 2 2 1650 547 235 200 0 chr4 139615910 139616080 -16014040 - ID_B1 SINE B4 -16 208 5 2 1650 1897 160 27 97 chr4 139616156 139616488 -16013632 + ORR1C1 LTR MaLR 5 333 -45 2 1650 1194 68 0 0 chr4 139616488 139616634 -16013486 + B1_Mm SINE Alu 1 146 -1 2 1650 1897 160 27 97 chr4 139616634 139616702 -16013418 + ORR1C1 LTR MaLR 334 377 -1 2 1650 434 213 184 13 chr4 139616948 139617100 -16013020 + MLT1C LTR MaLR 1 178 -289 2 1650 674 287 74 0 chr4 139617117 139617319 -16012801 + ID_B1 SINE B4 8 224 0 2 1650 556 246 39 0 chr4 139618109 139618239 -16011881 + ID_B1 SINE B4 16 150 -74 2 1650 1205 200 19 0 chr4 139618243 139618453 -16011667 + B3 SINE B2 3 216 0 2 1650 209 33 33 0 chr4 139618503 139618533 -16011587 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2 1650 1191 75 0 0 chr4 139618533 139618679 -16011441 - B1_Mus1 SINE Alu -1 147 2 2 1650 30 0 0 0 chr4 139618682 139618712 -16011408 + AT_rich Low_complexity Low_complexity 1 30 0 2 1650 208 269 19 0 chr4 139619147 139619199 -16010921 + MIRm SINE MIR 101 153 -123 2 1650 439 320 77 59 chr4 139620011 139620283 -16009837 + B4A SINE B4 2 278 -14 2 1650 345 162 0 0 chr4 139620356 139620424 -16009696 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1650 287 328 89 8 chr4 139620568 139620691 -16009429 + B4A SINE B4 150 282 -10 2 1650 1033 222 4 58 chr4 139621150 139621375 -16008745 + ID_B1 SINE B4 3 215 -9 2 1650 199 264 0 36 chr4 139622283 139622338 -16007782 - MIR SINE MIR -99 163 111 2 1650 1829 161 107 51 chr4 139623563 139623917 -16006203 - ORR1D1 LTR MaLR 0 374 1 2 1650 484 249 116 89 chr4 139624277 139624467 -16005653 + B3A SINE B2 1 195 -3 2 1650 496 279 33 26 chr4 139624519 139624670 -16005450 + B3 SINE B2 61 212 -4 2 1650 351 402 26 18 chr4 139624679 139624907 -16005213 - MER58B DNA MER1_type -64 277 48 2 1650 230 292 73 0 chr4 139626934 139627030 -16003090 - L1MC3 LINE L1 -1 7784 7682 2 1650 278 277 43 78 chr4 139627936 139628077 -16002043 + MIRb SINE MIR 8 143 -125 2 1650 189 358 31 21 chr4 139628398 139628495 -16001625 + MIRb SINE MIR 80 177 -91 2 1650 218 281 27 44 chr4 139628573 139628708 -16001412 - MIRm SINE MIR -94 182 42 2 1650 291 54 0 0 chr4 139629371 139629408 -16000712 + (TAA)n Simple_repeat Simple_repeat 3 39 0 2 1650 724 234 42 26 chr4 139629542 139629731 -16000389 - B3A SINE B2 -1 197 6 2 1650 421 62 31 0 chr4 139629768 139629833 -16000287 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1650 448 301 19 0 chr4 139629877 139629980 -16000140 - B4A SINE B4 -183 109 5 2 1650 727 182 19 1 chr4 139630175 139630321 -15999799 + B2_Mm2 SINE B2 1 159 -57 2 1650 306 0 0 0 chr4 139630333 139630367 -15999753 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1650 1434 79 0 16 chr4 139630458 139630650 -15999470 - B2_Mm2 SINE B2 -4 191 3 2 1650 256 253 88 12 chr4 139630693 139630773 -15999347 - MTEb LTR MaLR 0 379 294 2 1650 369 264 133 63 chr4 139630963 139631121 -15998999 + B4 SINE B4 2 170 -122 2 1650 218 329 0 41 chr4 139631162 139631235 -15998885 + RSINE1 SINE B4 81 150 -15 2 1650 495 0 0 0 chr4 139631240 139631295 -15998825 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1650 22 0 0 0 chr4 139631346 139631368 -15998752 + AT_rich Low_complexity Low_complexity 1 22 0 2 1650 1374 127 0 31 chr4 139631652 139631880 -15998240 - URR1A DNA MER1_type -5 221 1 2 1650 224 342 24 118 chr4 139631937 139631990 -15998130 - B2_Mm2 SINE B2 -2 193 2 2 1650 548 344 19 13 chr4 139631990 139632149 -15997971 - RSINE1 SINE B4 -3 162 3 2 1650 215 391 26 32 chr4 139632193 139632349 -15997771 - RSINE1 SINE B4 0 165 11 2 1650 442 282 35 47 chr4 139633143 139633314 -15996806 - MamRep434 DNA TcMar -130 296 128 2 1650 270 125 0 0 chr4 139634332 139634380 -15995740 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1650 242 243 144 112 chr4 139634831 139634956 -15995164 + B4 SINE B4 1 129 -163 2 1650 266 287 85 0 chr4 139634983 139635077 -15995043 + PB1D10 SINE Alu 8 109 -8 2 1650 290 289 26 0 chr4 139635060 139635136 -15994984 + B4 SINE B4 201 278 -14 2 1650 547 285 22 65 chr4 139635945 139636067 -15994053 + B4 SINE B4 74 189 -103 2 1650 3741 90 121 2 chr4 139636067 139636589 -15993531 + MT2B2 LTR ERVL 1 584 0 2 1650 547 285 22 65 chr4 139636589 139636695 -15993425 + B4 SINE B4 190 292 0 2 1650 563 127 0 8 chr4 139636704 139636823 -15993297 + (CA)n Simple_repeat Simple_repeat 2 119 0 2 1650 202 253 39 26 chr4 139638850 139638911 -15991209 + CT-rich Low_complexity Low_complexity 17 79 0 2 1650 964 134 7 7 chr4 139638911 139639061 -15991059 - B1_Mur4 SINE Alu 0 150 1 2 1650 202 253 39 26 chr4 139639061 139639076 -15991044 + polypyrimidine Low_complexity Low_complexity 2 16 0 2 1650 329 282 24 0 chr4 139640981 139641066 -15989054 - L2b LINE L2 -2 3373 3287 2 1650 551 305 0 0 chr4 139641102 139641233 -15988887 + B1F2 SINE Alu 1 131 -18 2 1650 1136 208 87 43 chr4 139641241 139641517 -15988603 + B4 SINE B4 5 292 0 2 1650 286 137 39 0 chr4 139642315 139642366 -15987754 + MLT1J LTR MaLR 100 152 -360 2 1650 299 315 99 0 chr4 139642720 139642831 -15987289 + MLT1J LTR MaLR 259 380 -132 2 1650 496 152 0 20 chr4 139642876 139642969 -15987151 + T-rich Low_complexity Low_complexity 10 101 0 2 1650 1463 28 0 6 chr4 139642969 139643150 -15986970 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1650 797 147 0 33 chr4 139643183 139643366 -15986754 + CT-rich Low_complexity Low_complexity 4 180 0 2 1650 507 60 0 0 chr4 139643853 139643920 -15986200 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1650 342 299 84 0 chr4 139644332 139644486 -15985634 + MIR SINE MIR 21 187 -75 2 1650 685 135 27 13 chr4 139646052 139646202 -15983918 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 2 1650 518 67 13 0 chr4 139646258 139646333 -15983787 + (TCCA)n Simple_repeat Simple_repeat 3 78 0 2 1650 392 302 40 6 chr4 139646391 139646564 -15983556 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1650 750 160 18 22 chr4 139646581 139646816 -15983304 + (TCCA)n Simple_repeat Simple_repeat 1 233 0 2 1650 417 97 0 0 chr4 139646866 139646938 -15983182 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 2 1650 197 269 24 71 chr4 139647709 139647793 -15982327 + L3 LINE CR1 2050 2129 -2360 2 1650 215 294 86 61 chr4 139647772 139647935 -15982185 + MIRb SINE MIR 71 237 -31 2 1650 318 295 79 24 chr4 139648846 139648999 -15981121 - MIRc SINE MIR -66 202 36 2 1650 230 222 0 0 chr4 139649484 139649529 -15980591 + MLT1D LTR MaLR 59 103 -402 2 1650 210 114 0 54 chr4 139649718 139649755 -15980365 + T-rich Low_complexity Low_complexity 3 37 0 2 1650 777 292 22 18 chr4 139649755 139649978 -15980142 - ID_B1 SINE B4 0 224 1 2 1650 237 132 0 0 chr4 139650354 139650392 -15979728 + (CACG)n Simple_repeat Simple_repeat 1 38 0 2 1650 606 288 60 40 chr4 139650403 139650602 -15979518 - B4A SINE B4 -88 204 2 2 1650 315 270 9 48 chr4 139650606 139650711 -15979409 - L2a LINE L2 -246 3180 3080 2 1650 218 333 114 0 chr4 139651422 139651527 -15978593 + MIR SINE MIR 6 122 -140 2 1650 312 252 0 0 chr4 139653063 139653186 -15976934 + (TCCA)n Simple_repeat Simple_repeat 1 123 0 2 1650 258 267 0 13 chr4 139653193 139653269 -15976851 + (CATA)n Simple_repeat Simple_repeat 2 76 0 2 1650 1293 94 8 3 chr4 139653269 139653911 -15976209 + (TCCA)n Simple_repeat Simple_repeat 1 645 0 3 1650 203 203 16 0 chr4 139653912 139653976 -15976144 + (CATA)n Simple_repeat Simple_repeat 4 68 0 3 1650 399 41 0 0 chr4 139653978 139654027 -15976093 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1650 268 324 0 0 chr4 139654027 139654101 -15976019 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 3 1650 369 333 14 21 chr4 139654563 139654704 -15975416 + MIR3 SINE MIR 58 197 -11 3 1650 188 265 43 14 chr4 139655146 139655215 -15974905 - MER5B DNA MER1_type -7 171 101 3 1650 265 222 32 0 chr4 139655258 139655321 -15974799 - PB1D7 SINE Alu -21 99 35 3 1650 297 311 0 0 chr4 139656573 139656647 -15973473 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1650 605 200 9 0 chr4 139656908 139657023 -15973097 - B3A SINE B2 -81 117 2 3 1650 441 0 0 0 chr4 139659243 139659292 -15970828 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1650 317 298 8 68 chr4 139660003 139660136 -15969984 + MIRm SINE MIR 29 153 -123 3 1650 209 186 0 0 chr4 139660604 139660647 -15969473 + G-rich Low_complexity Low_complexity 1 43 0 3 1650 212 227 24 96 chr4 139660648 139660731 -15969389 - MIRb SINE MIR -161 107 31 3 1650 364 71 89 0 chr4 139661630 139661686 -15968434 - HAL1-3A_ME LINE L1 -825 2033 1973 3 1650 509 189 16 39 chr4 139661692 139661874 -15968246 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 3 1650 220 241 25 0 chr4 139661867 139661946 -15968174 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1650 589 163 34 17 chr4 139661952 139662127 -15967993 + (TATG)n Simple_repeat Simple_repeat 1 178 0 3 1650 292 365 8 0 chr4 139662246 139662372 -15967748 - L2c LINE L2 -258 3129 3003 3 1650 291 328 44 7 chr4 139662641 139662776 -15967344 + MIRb SINE MIR 48 187 -81 3 1650 1052 197 39 0 chr4 139662870 139663078 -15967042 - URR1A DNA MER1_type -3 223 8 3 1650 651 250 7 7 chr4 139663565 139663706 -15966414 + RSINE1 SINE B4 3 143 -22 3 1650 211 104 20 20 chr4 139664343 139664392 -15965728 + (TTATA)n Simple_repeat Simple_repeat 1 49 0 3 1650 41 66 0 0 chr4 139664393 139664469 -15965651 + AT_rich Low_complexity Low_complexity 1 76 0 3 1650 494 255 54 20 chr4 139664473 139664621 -15965499 - RSINE1 SINE B4 -8 157 5 3 1650 1092 208 33 14 chr4 139666026 139666236 -15963884 - B3 SINE B2 -2 214 1 3 1650 215 347 20 0 chr4 139666424 139666522 -15963598 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 3 1650 756 86 0 0 chr4 139666803 139666908 -15963212 + (TC)n Simple_repeat Simple_repeat 2 106 0 3 1650 1471 74 32 0 chr4 139666916 139667105 -15963015 - B2_Mm2 SINE B2 0 195 1 3 1650 285 207 137 51 chr4 139667427 139667544 -15962576 - B1F1 SINE Alu -6 143 17 3 1650 340 328 136 52 chr4 139668027 139668313 -15961807 + MTEa LTR MaLR 51 360 -19 3 1650 1157 213 138 38 chr4 139668950 139669291 -15960829 - MTEb LTR MaLR -4 375 1 3 1650 294 272 106 10 chr4 139670504 139670608 -15959512 + ID_B1 SINE B4 57 170 -54 3 1650 269 345 35 0 chr4 139670537 139670624 -15959496 + PB1D10 SINE Alu 19 108 -9 3 1650 217 303 30 0 chr4 139670774 139670840 -15959280 + L2b LINE L2 3308 3375 0 3 1650 248 85 43 0 chr4 139672078 139672125 -15957995 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 3 1650 243 61 0 0 chr4 139672126 139672159 -15957961 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1650 1326 71 53 21 chr4 139673881 139674068 -15956052 + B2_Mm2 SINE B2 2 194 -1 3 1650 275 319 13 60 chr4 139674602 139674752 -15955368 - L1ME2z LINE L1 -183 6261 6119 3 1650 612 262 49 64 chr4 139674784 139674988 -15955132 - B4 SINE B4 0 292 92 3 1650 513 147 0 0 chr4 139674988 139675083 -15955037 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 1650 188 321 24 47 chr4 139675195 139675280 -15954840 - MIR SINE MIR -91 117 35 3 1650 858 291 31 4 chr4 139676237 139676458 -15953662 + B4A SINE B4 2 228 -64 3 1650 486 259 121 7 chr4 139676458 139676598 -15953522 + RSINE1 SINE B4 2 157 -8 3 1650 252 86 0 0 chr4 139676600 139676635 -15953485 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 3 1650 240 372 39 0 chr4 139676635 139676737 -15953383 - RMER12 LTR ERVK -467 855 750 3 1650 283 200 0 211 chr4 139676727 139676822 -15953298 + B4A SINE B4 218 292 0 3 1650 562 208 7 7 chr4 139676822 139676972 -15953148 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1650 257 333 0 0 chr4 139677904 139677970 -15952150 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1650 1202 68 0 0 chr4 139678019 139678167 -15951953 + B1_Mus1 SINE Alu 1 148 0 3 1650 835 305 9 87 chr4 139678527 139678872 -15951248 - MTEa LTR MaLR -11 368 51 3 1650 517 390 22 4 chr4 139680629 139680858 -15949262 + MIR SINE MIR 14 246 -16 3 1650 319 347 41 18 chr4 139681478 139681493 -15948627 - MER46C DNA MER2_type -90 248 234 3 1650 432 0 0 0 chr4 139681493 139681541 -15948579 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1650 319 347 41 18 chr4 139681541 139681695 -15948425 - MER46C DNA MER2_type -105 233 76 3 1650 903 165 0 0 chr4 139682947 139683123 -15946997 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1650 537 227 0 0 chr4 139683138 139683279 -15946841 + (TG)n Simple_repeat Simple_repeat 2 142 0 3 1650 1227 41 14 0 chr4 139683308 139683454 -15946666 + B1_Mus1 SINE Alu 1 148 0 3 1650 234 86 33 33 chr4 139683454 139683514 -15946606 + A-rich Low_complexity Low_complexity 1 60 0 3 1650 225 300 97 26 chr4 139683578 139683785 -15946335 - MIRb SINE MIR -16 252 18 3 1650 181 374 72 0 chr4 139683955 139684038 -15946082 + MER5A DNA MER1_type 66 154 -35 3 1650 525 16 0 0 chr4 139685039 139685101 -15945019 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1650 578 71 0 12 chr4 139685398 139685483 -15944637 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 1650 432 0 0 0 chr4 139685483 139685530 -15944590 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1650 217 246 121 40 chr4 139686664 139686812 -15943308 + PB1D7 SINE Alu 1 148 -1 3 1650 307 297 89 9 chr4 139688139 139688251 -15941869 - B4A SINE B4 -170 122 2 3 1650 294 347 18 12 chr4 139688449 139688618 -15941502 + (TGGA)n Simple_repeat Simple_repeat 3 172 0 3 1650 205 274 8 8 chr4 139688625 139688743 -15941377 + (TGGG)n Simple_repeat Simple_repeat 4 121 0 3 1650 1305 174 0 0 chr4 139688810 139689121 -15940999 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 3 1650 202 286 151 9 chr4 139689654 139689760 -15940360 + MIR SINE MIR 113 233 -29 3 1650 550 204 0 0 chr4 139690391 139690494 -15939626 - PB1D10 SINE Alu -8 109 7 3 1650 181 213 143 32 chr4 139690843 139690906 -15939214 + MIRb SINE MIR 173 242 -26 3 1650 296 316 154 0 chr4 139691828 139691964 -15938156 + MLT1J LTR MaLR 83 239 -273 3 1650 1105 195 132 66 chr4 139692023 139692342 -15937778 - MTD LTR MaLR 0 419 80 3 1650 525 220 90 15 chr4 139692315 139692449 -15937671 + B4A SINE B4 146 289 -3 3 1650 1422 234 44 19 chr4 139692685 139693051 -15937069 + MTE2b LTR MaLR 5 379 0 3 1650 248 284 156 39 chr4 139693167 139693321 -15936799 + L2a LINE L2 3225 3396 -30 3 1650 503 69 14 0 chr4 139693487 139693559 -15936561 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1650 652 35 0 0 chr4 139693565 139693650 -15936470 - B1_Mus2 SINE Alu -1 146 62 3 1650 507 206 0 0 chr4 139693683 139693858 -15936262 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1650 675 276 22 22 chr4 139693858 139694036 -15936084 - B4 SINE B4 -2 290 113 3 1650 226 285 63 84 chr4 139693927 139694069 -15936051 - B1_Mus1 SINE Alu -9 139 1 3 1650 1163 243 85 28 chr4 139694088 139694406 -15935714 + MTE2b LTR MaLR 1 336 -43 3 1650 216 254 17 0 chr4 139694688 139694747 -15935373 + (CGGA)n Simple_repeat Simple_repeat 2 61 0 3 1650 529 237 239 19 chr4 139695668 139695827 -15934293 - B3A SINE B2 -3 195 2 3 1650 326 284 59 48 chr4 139696067 139696269 -15933851 - B4A SINE B4 -3 221 1 3 1650 183 303 200 9 chr4 139696975 139697085 -15933035 + MIR SINE MIR 19 149 -59 3 1650 318 287 0 0 chr4 139697963 139698071 -15932049 + (GCGTG)n Simple_repeat Simple_repeat 3 110 0 3 1650 364 320 69 15 chr4 139698557 139698775 -15931345 + L1MD LINE L1 3827 4055 -2091 3 1650 1120 150 231 3 chr4 139698891 139699185 -15930935 - ORR1D1 LTR MaLR -10 364 4 3 1650 469 253 176 57 chr4 139699222 139699398 -15930722 - B3A SINE B2 0 198 2 3 1650 406 320 38 59 chr4 139700846 139701032 -15929088 + MamRep434 DNA TcMar 129 310 -116 3 1650 221 280 41 31 chr4 139701510 139701635 -15928485 + MIR SINE MIR 33 159 -117 3 1650 186 321 59 12 chr4 139702497 139702582 -15927538 - L3 LINE CR1 -115 4374 4286 3 1650 1191 112 0 0 chr4 139702634 139702813 -15927307 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 3 1650 574 253 53 0 chr4 139702832 139702982 -15927138 + B4A SINE B4 114 271 -21 3 1650 308 206 44 0 chr4 139704241 139704309 -15925811 - MIR SINE MIR -57 151 81 3 1650 357 186 0 0 chr4 139705090 139705160 -15924960 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1650 831 227 0 7 chr4 139706026 139706181 -15923939 + RSINE1 SINE B4 3 156 -9 3 1650 240 196 0 0 chr4 139706188 139706234 -15923886 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1650 580 271 82 43 chr4 139707820 139708028 -15922092 + B3 SINE B2 1 216 0 3 1650 246 62 0 0 chr4 139708427 139708459 -15921661 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1650 577 291 48 113 chr4 139708486 139708796 -15921324 - B4 SINE B4 -1 291 2 3 1650 316 294 0 38 chr4 139710169 139710309 -15919811 - ID4_ SINE ID -8 144 13 3 1650 522 0 0 0 chr4 139710824 139710882 -15919238 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1650 673 258 31 0 chr4 139712067 139712230 -15917890 - ID_B1 SINE B4 -56 168 1 4 1650 334 359 51 51 chr4 139712246 139712463 -15917657 + Cheshire DNA MER1_type 7 223 -2197 4 1650 481 218 80 18 chr4 139712943 139713055 -15917065 - PB1D7 SINE Alu -1 119 1 4 1650 533 277 25 19 chr4 139714328 139714490 -15915630 + RSINE1 SINE B4 3 165 0 4 1650 589 153 8 22 chr4 139714490 139714624 -15915496 + (CA)n Simple_repeat Simple_repeat 1 132 0 4 1650 663 210 0 0 chr4 139714659 139714835 -15915285 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 1650 1770 239 52 11 chr4 139714839 139715284 -15914836 - RMER5 LTR ERV1 -1 533 71 4 1650 781 263 70 70 chr4 139715436 139715773 -15914347 - ORR1E LTR MaLR -4 415 22 4 1650 1091 261 93 28 chr4 139717022 139717420 -15912700 - RLTR28B LTR ERVL -38 443 20 4 1650 2101 174 56 34 chr4 139717444 139717855 -15912265 - MTC LTR MaLR -1 420 1 4 1650 1177 204 125 98 chr4 139718610 139718979 -15911141 + MTE2b LTR MaLR 1 379 0 4 1650 252 225 34 91 chr4 139719792 139719880 -15910240 - MIRb SINE MIR -172 96 14 4 1650 214 333 145 13 chr4 139720438 139720590 -15909530 + MIR3 SINE MIR 15 186 -22 4 1650 522 254 98 0 chr4 139721259 139721381 -15908739 + ID_B1 SINE B4 82 215 -9 4 1650 212 319 72 36 chr4 139722206 139722372 -15907748 + L2 LINE L2 2609 2780 -639 4 1651 609 282 88 36 chr4 139722946 139723153 -15906967 - ORR1E LTR MaLR -153 217 15 4 1651 366 280 0 0 chr4 139725171 139725264 -15904856 + PB1D10 SINE Alu 2 94 -23 4 1651 790 243 86 14 chr4 139725378 139725587 -15904533 - ID_B1 SINE B4 0 224 1 4 1651 202 292 40 27 chr4 139726023 139726097 -15904023 - MIRc SINE MIR -98 170 96 4 1651 366 252 0 42 chr4 139727246 139727558 -15902562 + CT-rich Low_complexity Low_complexity 1 299 0 4 1651 234 238 23 23 chr4 139728157 139728177 -15901943 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1651 528 16 0 0 chr4 139728177 139728238 -15901882 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1651 234 238 23 23 chr4 139728238 139728303 -15901817 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1651 775 264 76 80 chr4 139728328 139728616 -15901504 - B4A SINE B4 -4 288 2 4 1651 968 252 59 36 chr4 139729940 139730187 -15899933 + MTEb LTR MaLR 69 313 -66 4 1651 674 30 40 0 chr4 139730187 139730288 -15899832 + (TCCC)n Simple_repeat Simple_repeat 2 106 0 4 1651 968 252 59 36 chr4 139730288 139730344 -15899776 + MTEb LTR MaLR 314 378 -1 4 1651 265 234 44 27 chr4 139730625 139730708 -15899412 - B4 SINE B4 -185 107 20 4 1651 489 258 77 15 chr4 139731232 139731362 -15898758 - MTE2b LTR MaLR -225 154 17 4 1651 256 263 130 13 chr4 139731364 139731441 -15898679 + B4A SINE B4 204 289 -3 4 1651 560 317 62 40 chr4 139731643 139731916 -15898204 + MLT1E2 LTR MaLR 348 626 -1 4 1651 370 265 12 0 chr4 139732044 139732210 -15897910 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1651 772 215 315 21 chr4 139732325 139732611 -15897509 + MTE2b LTR MaLR 10 379 0 4 1651 790 245 39 0 chr4 139732611 139732812 -15897308 - B4A SINE B4 -83 209 1 4 1651 1306 198 24 47 chr4 139732821 139733151 -15896969 - ORR1D1 LTR MaLR -1 373 41 4 1651 245 156 0 0 chr4 139733155 139733200 -15896920 - ORR1D1 LTR MaLR -268 99 55 4 1651 435 230 101 54 chr4 139733209 139733338 -15896782 - ORR1D1 LTR MaLR -239 135 1 4 1651 304 308 69 71 chr4 139733357 139733771 -15896349 + L2b LINE L2 2970 3397 -29 4 1651 188 133 0 43 chr4 139734402 139734449 -15895671 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 4 1651 693 36 0 0 chr4 139734449 139734533 -15895587 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 4 1651 320 364 0 0 chr4 139735421 139735531 -15894589 + MER58D DNA MER1_type 275 384 -2 4 1651 253 325 61 9 chr4 139735626 139735741 -15894379 + ORR1E LTR MaLR 6 126 -252 4 1651 394 288 113 14 chr4 139735777 139735918 -15894202 + ORR1E LTR MaLR 201 355 -4 4 1651 220 329 90 13 chr4 139738236 139738359 -15891761 - MIRc SINE MIR -94 182 49 4 1651 185 337 102 23 chr4 139739395 139739483 -15890637 - MIRc SINE MIR -118 150 56 4 1651 216 280 168 21 chr4 139740150 139740245 -15889875 - MIR SINE MIR -19 189 80 4 1651 376 257 138 53 chr4 139740299 139740488 -15889632 - MIR SINE MIR -31 231 27 4 1651 207 314 6 0 chr4 139741311 139741387 -15888733 + MIRc SINE MIR 66 147 -121 4 1651 189 0 0 0 chr4 139742895 139742916 -15887204 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1651 242 309 45 57 chr4 139743172 139743345 -15886775 - MIR SINE MIR -28 234 70 4 1651 479 45 0 15 chr4 139745067 139745134 -15884986 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1651 228 289 205 0 chr4 139746671 139746754 -15883366 - B3A SINE B2 -95 103 4 4 1651 494 330 127 12 chr4 139746888 139747133 -15882987 + MLT1A0 LTR MaLR 19 291 -74 4 1651 209 235 0 29 chr4 139747810 139747880 -15882240 + GA-rich Low_complexity Low_complexity 1 68 0 4 1651 1037 149 35 80 chr4 139748146 139748372 -15881748 + URR1A DNA MER1_type 11 226 0 4 1651 413 318 43 67 chr4 139748372 139748424 -15881696 - CYRA11_Mm Unknown Y-chromosome -441 176 130 4 1651 629 139 96 3 chr4 139749495 139749625 -15880495 - B1_Mur4 SINE Alu 0 150 7 4 1651 901 154 21 21 chr4 139750102 139750431 -15879689 + (TCCA)n Simple_repeat Simple_repeat 1 329 0 4 1651 470 103 13 0 chr4 139750467 139750545 -15879575 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 4 1651 416 219 8 0 chr4 139750575 139750698 -15879422 + (TCCA)n Simple_repeat Simple_repeat 2 125 0 4 1651 354 246 6 12 chr4 139750756 139750925 -15879195 + (TCCA)n Simple_repeat Simple_repeat 2 169 0 4 1651 509 319 37 76 chr4 139751790 139752117 -15878003 + ORR1E LTR MaLR 4 308 -66 4 1651 261 226 0 0 chr4 139753348 139753401 -15876719 - PB1D10 SINE Alu -31 86 34 4 1651 198 167 0 0 chr4 139753779 139753815 -15876305 + CT-rich Low_complexity Low_complexity 2 37 0 4 1651 1189 253 15 95 chr4 139754683 139755072 -15875048 - MTE2a LTR MaLR -14 365 8 4 1651 3359 62 0 24 chr4 139755396 139755813 -15874307 + MTB_Mm LTR MaLR 1 407 0 4 1651 233 287 40 53 chr4 139756757 139756853 -15873267 + L1MB8 LINE L1 5840 5932 -246 4 1651 1487 58 10 5 chr4 139756853 139757045 -15873075 + B2_Mm1t SINE B2 1 193 0 4 1651 233 287 40 53 chr4 139757045 139757099 -15873021 + L1MB8 LINE L1 5933 5988 -190 4 1651 459 0 0 0 chr4 139757334 139757385 -15872735 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1651 271 285 169 27 chr4 139757486 139757634 -15872486 + MLT1A LTR MaLR 19 187 -187 4 1651 252 167 0 0 chr4 139757655 139757703 -15872417 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 4 1651 525 297 207 46 chr4 139757960 139758370 -15871750 - MLT1L LTR MaLR -14 596 121 4 1651 302 260 0 40 chr4 139758570 139758646 -15871474 + MIR SINE MIR 7 79 -183 4 1651 296 157 56 14 chr4 139758651 139758722 -15871398 - B3A SINE B2 -83 115 42 4 1651 786 235 66 5 chr4 139759304 139759501 -15870619 - ID_B1 SINE B4 -4 220 12 4 1651 411 283 19 0 chr4 139759515 139759621 -15870499 - PB1D7 SINE Alu -8 112 5 4 1651 216 280 242 23 chr4 139759621 139759635 -15870485 - ID_B1 SINE B4 0 176 69 4 1651 708 285 107 26 chr4 139760927 139761197 -15868923 + B4A SINE B4 1 292 0 4 1651 565 284 38 123 chr4 139762419 139762841 -15867279 + MLT1B LTR MaLR 5 390 0 4 1651 267 281 44 0 chr4 139762858 139762993 -15867127 + L1M LINE L1 5257 5397 -776 4 1651 274 217 106 18 chr4 139763195 139763302 -15866818 + MIR SINE MIR 46 167 -109 4 1651 1386 251 23 98 chr4 139763355 139763792 -15866328 - MTD LTR MaLR 0 419 16 4 1651 312 335 155 11 chr4 139764199 139764386 -15865734 - MIRb SINE MIR -15 253 40 4 1651 340 250 25 0 chr4 139764802 139764882 -15865238 - MIRb SINE MIR -140 128 47 4 1651 539 244 95 46 chr4 139766022 139766289 -15863831 + ORR1E LTR MaLR 3 271 -99 4 1651 589 277 55 107 chr4 139767200 139767240 -15862880 + B4A SINE B4 2 40 -252 4 1651 1179 88 0 0 chr4 139767240 139767387 -15862733 + B1_Mus2 SINE Alu 1 147 0 4 1651 589 277 55 107 chr4 139767387 139767617 -15862503 + B4A SINE B4 41 258 -34 4 1651 349 211 26 0 chr4 139767634 139767790 -15862330 + (CAGA)n Simple_repeat Simple_repeat 1 160 0 4 1651 276 287 270 0 chr4 139769102 139769217 -15860903 + MIRc SINE MIR 2 147 -121 4 1651 317 315 36 9 chr4 139769975 139770087 -15860033 + MIR SINE MIR 35 149 -113 4 1651 669 293 92 63 chr4 139771399 139771814 -15858306 + RMER5 LTR ERV1 89 515 -19 4 1651 202 344 116 24 chr4 139772489 139772653 -15857467 - MIR SINE MIR -25 237 59 4 1651 194 280 26 13 chr4 139772673 139772749 -15857371 - MIRm SINE MIR -85 191 115 4 1651 1339 207 125 12 chr4 139772878 139773205 -15856915 - MTEa LTR MaLR -13 366 3 4 1651 215 133 22 0 chr4 139773277 139773322 -15856798 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 4 1651 537 121 0 0 chr4 139773322 139773405 -15856715 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 4 1651 1340 69 4 0 chr4 139773412 139773643 -15856477 + (TGGA)n Simple_repeat Simple_repeat 1 231 0 4 1651 447 282 14 14 chr4 139774792 139774936 -15855184 + MIR SINE MIR 3 146 -116 4 1651 223 331 153 16 chr4 139774926 139775181 -15854939 - L2 LINE L2 -401 3018 2729 4 1651 180 0 0 0 chr4 139775196 139775216 -15854904 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 4 1651 243 128 25 5 chr4 139775305 139775354 -15854766 + MIRc SINE MIR 78 126 -150 4 1651 214 247 178 0 chr4 139775917 139775990 -15854130 - MIRb SINE MIR -145 123 38 4 1651 558 0 0 0 chr4 139777415 139777477 -15852643 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1651 307 270 85 44 chr4 139777561 139777720 -15852400 - MIRc SINE MIR -110 158 2 4 1651 188 357 67 37 chr4 139778145 139778279 -15851841 - MIRb SINE MIR -97 165 28 5 1651 342 205 24 24 chr4 139778327 139778412 -15851708 + MLT1A1 LTR MaLR 313 397 -11 5 1651 587 294 32 16 chr4 139779570 139779760 -15850360 + MIR SINE MIR 65 257 -5 5 1651 229 232 43 14 chr4 139779760 139779830 -15850290 + MIRc SINE MIR 152 223 -45 5 1651 387 329 12 12 chr4 139780446 139780606 -15849514 + (CTCA)n Simple_repeat Simple_repeat 1 160 0 5 1651 245 246 0 17 chr4 139781368 139781426 -15848694 - MIR SINE MIR -73 135 79 5 1651 951 88 0 0 chr4 139782155 139782303 -15847817 + (TC)n Simple_repeat Simple_repeat 1 148 0 5 1651 201 39 0 0 chr4 139782303 139782328 -15847792 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1651 203 247 83 36 chr4 139782382 139782466 -15847654 - MIRm SINE MIR -174 102 15 5 1651 244 252 142 28 chr4 139782738 139782844 -15847276 + MLT1J2 LTR MaLR 198 315 -133 5 1651 243 329 87 56 chr4 139783455 139783616 -15846504 + B4A SINE B4 9 174 -118 5 1651 666 212 0 0 chr4 139786601 139786766 -15843354 + (TGGA)n Simple_repeat Simple_repeat 4 168 0 5 1651 417 123 0 0 chr4 139786966 139787031 -15843089 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 5 1651 183 300 0 0 chr4 139787486 139787536 -15842584 + MIR SINE MIR 70 119 -89 5 1651 350 241 114 11 chr4 139787832 139787920 -15842200 - MTE2b LTR MaLR -2 377 281 5 1651 2749 137 38 28 chr4 139787937 139788442 -15841678 - RLTR11A2 LTR ERVK -17 510 1 5 1651 556 286 125 45 chr4 139788443 139788707 -15841413 - MTE2b LTR MaLR -94 285 1 5 1651 226 222 78 16 chr4 139789205 139789269 -15840851 + MIRc SINE MIR 84 151 -117 5 1651 3446 52 0 0 chr4 139789841 139790247 -15839873 - MTB_Mm LTR MaLR 0 407 2 5 1651 243 88 0 0 chr4 139791075 139791109 -15839011 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 5 1651 189 325 62 12 chr4 139791332 139791413 -15838707 - MIRb SINE MIR -84 184 100 5 1651 417 285 6 68 chr4 139791766 139791928 -15838192 - MER113 DNA MER1_type -51 470 319 5 1651 509 272 29 7 chr4 139791999 139792136 -15837984 - B1F SINE Alu -9 140 1 5 1651 657 150 28 17 chr4 139792514 139792690 -15837430 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1651 209 184 0 0 chr4 139792696 139792734 -15837386 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1651 482 237 101 63 chr4 139792761 139792968 -15837152 - B4A SINE B4 -13 279 65 5 1651 543 31 0 0 chr4 139793107 139793172 -15836948 + (GGA)n Simple_repeat Simple_repeat 1 65 0 5 1651 269 247 108 12 chr4 139794149 139794232 -15835888 + PB1D10 SINE Alu 31 120 -7 5 1651 374 289 33 88 chr4 139794182 139794364 -15835756 + B4 SINE B4 40 211 -81 5 1651 712 151 0 53 chr4 139794246 139794379 -15835741 + B1_Mur2 SINE Alu 11 136 -13 5 1651 228 67 0 0 chr4 139794382 139794412 -15835708 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1651 381 22 0 0 chr4 139795255 139795301 -15834819 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1651 252 226 0 0 chr4 139795306 139795359 -15834761 + RMER30 DNA MER1_type 124 176 -26 5 1651 200 372 128 0 chr4 139796154 139796310 -15833810 + MIRb SINE MIR 87 262 -6 5 1651 447 19 0 0 chr4 139796425 139796477 -15833643 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1651 520 181 8 8 chr4 139797971 139798099 -15832021 + G-rich Low_complexity Low_complexity 1 128 0 5 1651 333 302 43 0 chr4 139798099 139798215 -15831905 + GA-rich Low_complexity Low_complexity 3 123 0 5 1651 348 24 0 0 chr4 139798242 139798283 -15831837 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1651 448 300 64 6 chr4 139798522 139798693 -15831427 + MIRb SINE MIR 19 199 -69 5 1651 210 71 0 0 chr4 139799606 139799634 -15830486 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 5 1651 236 30 0 29 chr4 139801176 139801210 -15828910 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 5 1651 522 0 0 0 chr4 139801981 139802039 -15828081 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1651 198 208 0 0 chr4 139802300 139802353 -15827767 + (CGG)n Simple_repeat Simple_repeat 2 54 0 5 1651 292 284 25 17 chr4 139802692 139802810 -15827310 + C-rich Low_complexity Low_complexity 1 119 0 5 1651 205 309 0 0 chr4 139804854 139804909 -15825211 + L2c LINE L2 3333 3387 0 5 1651 275 299 70 58 chr4 139805745 139805901 -15824219 - MIRc SINE MIR -88 180 23 5 1651 234 316 20 39 chr4 139806021 139806123 -15823997 - MIRb SINE MIR -62 206 107 5 1651 423 0 0 0 chr4 139806197 139806244 -15823876 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1651 297 335 64 10 chr4 139806833 139807028 -15823092 - MIR SINE MIR -44 218 16 5 1651 805 116 29 0 chr4 139807209 139807382 -15822738 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 5 1651 300 137 0 0 chr4 139807450 139807501 -15822619 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 5 1651 465 121 0 0 chr4 139807512 139807595 -15822525 + (CATA)n Simple_repeat Simple_repeat 2 84 0 5 1651 360 0 0 0 chr4 139807612 139807652 -15822468 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 5 1651 185 111 56 0 chr4 139808486 139808522 -15821598 + CT-rich Low_complexity Low_complexity 3 40 0 5 1651 261 0 0 0 chr4 139810016 139810045 -15820075 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1651 186 128 0 0 chr4 139810160 139810199 -15819921 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1651 1183 68 0 13 chr4 139810209 139810358 -15819762 - B1_Mm SINE Alu 0 147 1 5 1651 324 270 71 2 chr4 139810358 139810455 -15819665 - PB1D10 SINE Alu -10 107 5 5 1651 378 0 0 0 chr4 139810510 139810552 -15819568 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1651 903 83 37 8 chr4 139810554 139810688 -15819432 - B2_Mm2 SINE B2 -56 139 2 5 1651 264 333 0 0 chr4 139811025 139811094 -15819026 - ID4 SINE ID -13 70 2 5 1651 382 238 119 0 chr4 139811109 139811210 -15818910 - PB1 SINE Alu 0 127 15 5 1651 271 200 16 16 chr4 139811950 139812011 -15818109 + AmnSINE1 SINE SINE 436 496 -79 5 1651 216 293 19 0 chr4 139812253 139812331 -15817789 + MIRb SINE MIR 48 126 -136 5 1651 222 194 0 0 chr4 139812970 139813042 -15817078 + GA-rich Low_complexity Low_complexity 1 72 0 5 1651 593 120 11 64 chr4 139813027 139813214 -15816906 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 5 1651 198 0 0 0 chr4 139813554 139813576 -15816544 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 5 1651 442 326 58 51 chr4 139814007 139814282 -15815838 - L1MB2 LINE L1 -50 6121 5845 5 1651 900 294 40 7 chr4 139814334 139814612 -15815508 - B4A SINE B4 -5 287 1 5 1651 253 219 16 0 chr4 139814613 139814677 -15815443 - L1MB2 LINE L1 -351 5829 5765 5 1651 411 238 120 40 chr4 139815211 139815386 -15814734 - ORR1E LTR MaLR -160 199 11 5 1651 718 336 38 23 chr4 139815663 139815925 -15814195 - 7SK RNA RNA -16 315 50 5 1651 818 106 7 0 chr4 139816012 139816153 -15813967 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1651 221 0 35 0 chr4 139816659 139816688 -15813432 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 5 1651 227 294 54 0 chr4 139816819 139816911 -15813209 - ZP3AR Satellite Satellite -72 140 44 5 1651 437 263 177 21 chr4 139817475 139817729 -15812391 + MLT1F2 LTR MaLR 40 371 -208 5 1651 362 250 0 59 chr4 139817875 139818062 -15812058 + CT-rich Low_complexity Low_complexity 4 179 0 5 1651 319 229 0 87 chr4 139818075 139818271 -15811849 + CT-rich Low_complexity Low_complexity 1 179 0 5 1651 557 224 9 0 chr4 139819946 139820062 -15810058 - ID_B1 SINE B4 -9 215 99 5 1651 362 308 39 0 chr4 139820062 139820076 -15810044 - B1_Mus1 SINE Alu -9 139 5 5 1651 327 65 0 0 chr4 139820173 139820219 -15809901 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1651 497 235 93 13 chr4 139821062 139821213 -15808907 + MLT1B LTR MaLR 9 171 -219 5 1651 880 129 9 0 chr4 139821215 139821441 -15808679 + (TTC)n Simple_repeat Simple_repeat 1 228 0 5 1651 648 206 0 0 chr4 139821441 139821587 -15808533 + CT-rich Low_complexity Low_complexity 2 147 0 5 1651 278 50 25 0 chr4 139821622 139821662 -15808458 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1651 189 0 0 0 chr4 139821685 139821706 -15808414 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 5 1651 1920 118 45 51 chr4 139821757 139822088 -15808032 + ORR1A4 LTR MaLR 1 329 0 5 1651 260 314 87 19 chr4 139822144 139822248 -15807872 + B4A SINE B4 48 158 -134 5 1651 489 226 42 34 chr4 139822475 139822594 -15807526 + MTEa LTR MaLR 1 120 -259 5 1651 558 0 0 0 chr4 139822770 139822832 -15807288 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1651 354 23 0 0 chr4 139822832 139822874 -15807246 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1651 189 299 0 0 chr4 139824652 139824779 -15805341 + (TG)n Simple_repeat Simple_repeat 2 128 0 5 1651 183 222 0 0 chr4 139824871 139824916 -15805204 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 5 1651 233 265 12 0 chr4 139824981 139825064 -15805056 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1651 454 283 35 0 chr4 139826817 139826930 -15803190 - PB1D10 SINE Alu 0 117 1 5 1651 183 237 16 48 chr4 139827107 139827169 -15802951 - L3 LINE CR1 -931 3558 3499 5 1651 216 387 0 0 chr4 139827696 139827743 -15802377 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1651 219 69 0 0 chr4 139827743 139827772 -15802348 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1651 216 387 0 0 chr4 139827772 139827843 -15802277 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1651 187 434 37 0 chr4 139828041 139828230 -15801890 + MIR SINE MIR 49 244 -18 5 1651 491 225 8 70 chr4 139828842 139828971 -15801149 - ID_B1 SINE B4 -5 219 99 5 1651 252 315 128 45 chr4 139830691 139830824 -15799296 - MLT1H LTR MaLR -262 287 144 5 1651 378 0 0 0 chr4 139830903 139830945 -15799175 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1651 508 214 10 10 chr4 139831374 139831473 -15798647 + B4 SINE B4 4 102 -190 6 1651 245 254 0 112 chr4 139831475 139831555 -15798565 + B4 SINE B4 222 292 0 6 1651 585 188 0 22 chr4 139831570 139831845 -15798275 + (CA)n Simple_repeat Simple_repeat 1 268 0 6 1651 464 209 4 0 chr4 139831882 139832123 -15797997 + (CA)n Simple_repeat Simple_repeat 1 241 0 6 1651 290 308 53 22 chr4 139832219 139832416 -15797704 - MIRb SINE MIR -39 237 47 6 1651 988 88 88 0 chr4 139832497 139832633 -15797487 - B1_Mus1 SINE Alu 0 148 1 6 1651 269 319 74 0 chr4 139833244 139833379 -15796741 + MER20 DNA MER1_type 36 180 -39 6 1651 396 233 113 28 chr4 139834587 139834693 -15795427 - PB1D10 SINE Alu -2 115 1 6 1651 443 259 128 36 chr4 139834699 139834895 -15795225 - MLT1D LTR MaLR -288 217 4 6 1651 192 330 100 74 chr4 139834942 139835132 -15794988 - MIRb SINE MIR -38 230 36 6 1651 411 252 115 23 chr4 139835205 139835335 -15794785 + B4A SINE B4 3 144 -148 6 1651 440 48 0 31 chr4 139835335 139835399 -15794721 + (AGGGGG)n Simple_repeat Simple_repeat 2 63 0 6 1651 494 220 34 0 chr4 139835403 139835507 -15794613 + B4A SINE B4 128 235 -57 6 1651 443 259 74 29 chr4 139835507 139835682 -15794438 + B4A SINE B4 3 185 -107 6 1651 491 247 0 0 chr4 139835896 139836070 -15794050 + (CAGG)n Simple_repeat Simple_repeat 1 174 0 6 1651 207 88 0 0 chr4 139836756 139836790 -15793330 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1651 181 250 25 0 chr4 139837622 139837662 -15792458 + MIRb SINE MIR 36 76 -192 6 1651 3124 77 7 15 chr4 139838232 139838642 -15791478 - MTB_Mm LTR MaLR 0 407 1 6 1651 194 267 33 0 chr4 139838734 139838794 -15791326 - MIR SINE MIR -125 137 76 6 1651 532 232 62 55 chr4 139838819 139838916 -15791204 - B1F1 SINE Alu -2 147 49 6 1651 198 0 0 0 chr4 139838916 139838938 -15791182 + (CCA)n Simple_repeat Simple_repeat 2 23 0 6 1651 532 232 62 55 chr4 139838938 139838986 -15791134 - B1F1 SINE Alu -101 48 1 6 1651 350 322 38 44 chr4 139841167 139841326 -15788794 - MIRb SINE MIR -63 205 48 6 1651 252 167 0 0 chr4 139841342 139841390 -15788730 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1651 326 321 29 64 chr4 139841409 139841549 -15788571 - B4 SINE B4 -152 140 6 6 1651 320 343 95 42 chr4 139841636 139841898 -15788222 + MLT1C LTR MaLR 180 455 -12 6 1651 590 186 107 15 chr4 139842308 139842439 -15787681 + B1F1 SINE Alu 5 147 -2 6 1651 277 304 122 37 chr4 139842469 139842633 -15787487 - MIRb SINE MIR -90 178 1 6 1651 356 300 91 0 chr4 139842794 139842904 -15787216 - ID_B1 SINE B4 -18 206 87 6 1651 219 258 15 0 chr4 139843415 139843481 -15786639 + L3 LINE CR1 4320 4386 -103 6 1651 234 128 0 0 chr4 139844594 139844633 -15785487 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1651 859 267 51 51 chr4 139844689 139844965 -15785155 - B4A SINE B4 -12 280 5 6 1651 225 209 0 0 chr4 139845257 139845300 -15784820 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 6 1651 462 252 18 0 chr4 139845460 139845571 -15784549 - ID_B1 SINE B4 -9 215 103 6 1651 199 372 76 13 chr4 139846339 139846497 -15783623 - L2 LINE L2 -564 2855 2688 6 1651 735 307 63 0 chr4 139846710 139846773 -15783347 - B4A SINE B4 -9 283 219 6 1651 213 39 0 0 chr4 139846773 139846799 -15783321 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1651 735 307 63 0 chr4 139846799 139846973 -15783147 - B4A SINE B4 -74 218 32 6 1651 344 123 0 14 chr4 139847020 139847094 -15783026 + (CAG)n Simple_repeat Simple_repeat 1 73 0 6 1651 257 326 131 8 chr4 139847137 139847267 -15782853 + MIRb SINE MIR 123 268 0 6 1651 207 0 0 0 chr4 139848587 139848610 -15781510 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 1651 377 220 21 62 chr4 139848641 139848738 -15781382 - B1F SINE Alu -48 101 9 6 1651 200 314 188 34 chr4 139848934 139849142 -15780978 - L2b LINE L2 -1 3374 3135 6 1651 190 264 27 27 chr4 139850133 139850207 -15779913 - MIRm SINE MIR -117 159 86 6 1651 1286 81 17 17 chr4 139850856 139851033 -15779087 + B2_Mm2 SINE B2 2 178 -17 6 1651 273 297 43 11 chr4 139852094 139852186 -15777934 - Tigger7 DNA MER2_type -8 2483 2389 6 1651 689 353 35 14 chr4 139852266 139852553 -15777567 - Tigger7 DNA MER2_type -2162 329 37 6 1651 246 364 28 7 chr4 139852671 139852815 -15777305 - MIRb SINE MIR -81 187 41 6 1651 424 181 28 19 chr4 139852816 139852923 -15777197 + ORR1A1 LTR MaLR 1 108 -238 6 1651 1987 91 13 7 chr4 139852920 139853218 -15776902 + ORR1A2 LTR MaLR 28 327 0 6 1652 863 171 9 5 chr4 139854505 139854733 -15775387 + (TCCA)n Simple_repeat Simple_repeat 1 229 0 6 1652 536 324 6 0 chr4 139854794 139854964 -15775156 + (TCCA)n Simple_repeat Simple_repeat 4 174 0 6 1652 188 268 18 18 chr4 139855255 139855312 -15774808 - L2c LINE L2 -50 3337 3281 6 1652 1545 68 16 0 chr4 139856126 139856317 -15773803 - B2_Mm2 SINE B2 0 195 2 6 1652 259 254 17 0 chr4 139856413 139856472 -15773648 + MER20 DNA MER1_type 4 63 -156 6 1652 381 304 52 12 chr4 139856749 139856922 -15773198 - L1ME5 LINE L1 -136 6058 5879 6 1652 288 300 22 51 chr4 139858407 139858544 -15771576 + YREP_Mm Unknown Unknown 162 294 -1518 6 1652 565 218 32 0 chr4 139858430 139858554 -15771566 - B1F SINE Alu -10 139 12 6 1652 466 237 61 8 chr4 139859396 139859528 -15770592 + B1F SINE Alu 11 149 0 6 1652 241 231 0 0 chr4 139859537 139859589 -15770531 + ID4 SINE ID 5 56 -27 6 1652 612 207 11 17 chr4 139859613 139859790 -15770330 + GA-rich Low_complexity Low_complexity 2 177 0 6 1652 377 286 41 133 chr4 139860170 139860388 -15769732 + Tigger7 DNA MER2_type 48 245 -2246 6 1652 705 262 58 0 chr4 139861012 139861184 -15768936 - B3A SINE B2 -16 182 1 6 1652 196 365 28 0 chr4 139861738 139861845 -15768275 - MIRb SINE MIR -116 152 43 6 1652 228 111 0 0 chr4 139861949 139861985 -15768135 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 6 1652 736 231 166 53 chr4 139862071 139862318 -15767802 - B4A SINE B4 -14 278 4 6 1652 602 302 59 32 chr4 139862496 139862749 -15767371 + LTR90B LTR LTR 150 409 -387 6 1652 513 120 0 0 chr4 139863009 139863101 -15767019 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1652 467 220 10 5 chr4 139863165 139863359 -15766761 + (TG)n Simple_repeat Simple_repeat 1 195 0 6 1652 654 270 52 133 chr4 139863371 139863679 -15766441 - B4A SINE B4 -2 290 8 6 1652 246 351 59 21 chr4 139864026 139864178 -15765942 + MIRc SINE MIR 79 233 -35 6 1652 187 368 44 0 chr4 139864177 139864245 -15765875 + MER5B DNA MER1_type 33 103 -75 6 1652 182 211 135 0 chr4 139864450 139864502 -15765618 + MIRb SINE MIR 27 85 -183 6 1652 228 276 115 71 chr4 139864870 139864983 -15765137 + L2a LINE L2 3309 3426 0 6 1652 258 289 47 49 chr4 139865042 139865179 -15764941 - MIRb SINE MIR -46 162 35 6 1652 1274 268 56 50 chr4 139865732 139866109 -15764011 - MTE2b LTR MaLR 0 379 1 6 1652 373 244 0 0 chr4 139866131 139866209 -15763911 + RSINE1 SINE B4 15 92 -73 6 1652 192 77 0 0 chr4 139866209 139866235 -15763885 + (GGA)n Simple_repeat Simple_repeat 2 27 0 6 1652 274 266 12 37 chr4 139866235 139866317 -15763803 + RSINE1 SINE B4 86 165 0 6 1652 1006 141 17 0 chr4 139866317 139866982 -15763138 + (CA)n Simple_repeat Simple_repeat 1 676 0 6 1652 240 121 33 33 chr4 139867277 139867337 -15762783 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 6 1652 600 154 29 26 chr4 139867358 139867631 -15762489 + (TGAA)n Simple_repeat Simple_repeat 1 274 0 6 1652 273 192 48 0 chr4 139867637 139867762 -15762358 + (TGAG)n Simple_repeat Simple_repeat 1 131 0 6 1652 548 186 24 0 chr4 139867774 139867941 -15762179 + (TGAG)n Simple_repeat Simple_repeat 1 171 0 6 1652 367 317 20 0 chr4 139868375 139868476 -15761644 + MTEa LTR MaLR 1 103 -276 6 1652 301 291 26 35 chr4 139869283 139869397 -15760723 - MTE2b LTR MaLR -23 356 244 6 1652 373 211 125 0 chr4 139869438 139869542 -15760578 - MTE2b LTR MaLR -262 117 1 6 1652 692 196 265 44 chr4 139870132 139870313 -15759807 + ID_B1 SINE B4 3 223 -1 6 1652 701 194 0 15 chr4 139870642 139870778 -15759342 - MTEa LTR MaLR -51 328 195 6 1652 225 271 0 0 chr4 139870931 139870990 -15759130 - MTEa LTR MaLR -126 253 195 6 1652 879 256 54 30 chr4 139871000 139871282 -15758838 - MTEa LTR MaLR -89 290 3 6 1652 292 203 0 28 chr4 139872334 139872405 -15757715 - MLT1A1 LTR MaLR 0 408 340 6 1652 435 202 99 20 chr4 139872408 139872509 -15757611 + PB1D10 SINE Alu 1 109 -8 6 1652 207 0 0 0 chr4 139872658 139872681 -15757439 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1652 184 345 52 17 chr4 139873631 139873746 -15756374 + MIR SINE MIR 13 131 -131 6 1652 203 303 0 0 chr4 139873902 139873991 -15756129 + (CTG)n Simple_repeat Simple_repeat 3 91 0 6 1652 607 325 5 40 chr4 139874097 139874296 -15755824 + B3A SINE B2 1 192 -6 6 1652 484 227 0 19 chr4 139874332 139874489 -15755631 + GA-rich Low_complexity Low_complexity 1 154 0 6 1652 796 246 177 21 chr4 139874495 139874732 -15755388 - B4 SINE B4 -16 276 3 6 1652 29 0 0 0 chr4 139875087 139875116 -15755004 + AT_rich Low_complexity Low_complexity 1 29 0 6 1652 445 165 10 10 chr4 139875585 139875683 -15754437 + G-rich Low_complexity Low_complexity 3 100 0 6 1652 1086 41 48 0 chr4 139875816 139875963 -15754157 + RMER17A LTR ERVK 1 154 -597 6 1652 180 0 0 0 chr4 139877736 139877756 -15752364 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 6 1652 430 250 80 0 chr4 139877894 139877994 -15752126 + PB1D10 SINE Alu 2 109 -8 6 1652 188 338 0 72 chr4 139878128 139878211 -15751909 - L2b LINE L2 -179 3196 3120 6 1652 986 258 110 7 chr4 139878221 139878502 -15751618 + MTEa LTR MaLR 1 310 -69 6 1652 186 43 0 0 chr4 139878647 139878670 -15751450 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 1652 949 207 10 139 chr4 139878750 139879183 -15750937 + ORR1D1 LTR MaLR 5 346 -24 6 1652 304 351 139 16 chr4 139882051 139882245 -15747875 + MIRb SINE MIR 26 243 -25 6 1652 307 256 56 0 chr4 139883093 139883183 -15746937 + MLT1K LTR MaLR 160 254 -341 6 1652 247 286 123 9 chr4 139883597 139883703 -15746417 + MLT1K LTR MaLR 316 433 -162 6 1652 224 317 79 0 chr4 139885951 139886052 -15744068 + MIRb SINE MIR 48 156 -112 6 1652 499 139 10 10 chr4 139887183 139887285 -15742835 + (TGGA)n Simple_repeat Simple_repeat 2 103 0 7 1652 555 91 0 0 chr4 139887286 139887374 -15742746 + ORR1A2 LTR MaLR 1 88 -239 7 1652 2113 69 3 7 chr4 139887391 139887684 -15742436 + ORR1A2 LTR MaLR 28 319 -8 7 1652 210 337 24 0 chr4 139887688 139887771 -15742349 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 7 1652 289 281 14 0 chr4 139887773 139887919 -15742201 + (TGGG)n Simple_repeat Simple_repeat 3 150 0 7 1652 542 304 21 42 chr4 139888189 139888454 -15741666 + L1MB8 LINE L1 5879 6139 -41 7 1652 1100 259 50 11 chr4 139888957 139889234 -15740886 + B4A SINE B4 3 290 -2 7 1652 267 265 15 0 chr4 139889245 139889313 -15740807 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1652 234 322 58 0 chr4 139890086 139890173 -15739947 + MIRb SINE MIR 106 197 -71 7 1652 552 347 19 65 chr4 139890879 139890892 -15739228 - B4A SINE B4 -10 282 270 7 1652 435 38 0 0 chr4 139890892 139890945 -15739175 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1652 552 347 19 65 chr4 139890945 139891193 -15738927 - B4A SINE B4 -23 269 33 7 1652 304 339 35 46 chr4 139891513 139891686 -15738434 - MLT1A0 LTR MaLR -194 171 1 7 1652 475 308 77 0 chr4 139892425 139892594 -15737526 + MLT1B LTR MaLR 39 220 -170 7 1652 365 296 9 9 chr4 139892599 139892708 -15737412 - MLT1A1 LTR MaLR 0 408 300 7 1652 285 286 129 50 chr4 139892997 139893137 -15736983 + RMER15 LTR ERVL 10 160 -415 7 1652 2628 121 34 0 chr4 139893146 139893527 -15736593 - ORR1B1 LTR MaLR 0 394 1 7 1652 495 321 0 12 chr4 139893969 139894133 -15735987 - ID_B1 SINE B4 0 224 63 7 1652 372 43 0 0 chr4 139894189 139894235 -15735885 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 7 1652 363 352 6 60 chr4 139894429 139894595 -15735525 + RSINE1 SINE B4 9 165 0 7 1652 1069 275 113 15 chr4 139894696 139895032 -15735088 + ORR1D2 LTR MaLR 1 369 -1 7 1652 564 15 0 0 chr4 139895618 139895683 -15734437 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1652 219 218 73 0 chr4 139895700 139895755 -15734365 + MIR SINE MIR 95 153 -55 7 1652 353 167 13 0 chr4 139895993 139896071 -15734049 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 7 1652 517 334 125 28 chr4 139896289 139896609 -15733511 - L1MB3 LINE L1 -2 6181 5831 7 1652 867 252 103 106 chr4 139896659 139897018 -15733102 + MTE2b LTR MaLR 20 377 -2 7 1652 524 247 7 0 chr4 139897045 139897199 -15732921 + (TGGA)n Simple_repeat Simple_repeat 3 157 0 7 1652 522 0 0 0 chr4 139897931 139897989 -15732131 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1652 210 152 0 0 chr4 139898785 139898818 -15731302 - L2c LINE L2 -16 3371 3339 7 1652 192 289 74 53 chr4 139898818 139898879 -15731241 - MIRb SINE MIR -11 256 161 7 1652 1043 58 26 0 chr4 139899231 139899387 -15730733 + (TCTCCC)n Simple_repeat Simple_repeat 3 162 0 7 1652 264 30 0 0 chr4 139899389 139899422 -15730698 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1652 454 231 16 49 chr4 139899422 139899535 -15730585 - PB1D7 SINE Alu -7 113 4 7 1652 474 65 0 0 chr4 139899855 139899917 -15730203 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 7 1652 414 0 0 0 chr4 139900839 139900885 -15729235 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1652 403 311 65 37 chr4 139901012 139901259 -15728861 - MIR SINE MIR -7 255 9 7 1652 327 299 82 0 chr4 139901390 139901487 -15728633 - MER91C DNA Tip100 0 140 36 7 1652 213 222 74 0 chr4 139901535 139901589 -15728531 - MIRc SINE MIR -143 125 68 7 1652 671 329 15 60 chr4 139902613 139902881 -15727239 + B4A SINE B4 37 292 0 7 1652 260 274 16 0 chr4 139902881 139902943 -15727177 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1652 1930 115 14 3 chr4 139903003 139903290 -15726830 - ORR1A3 LTR MaLR 0 326 37 7 1652 892 131 19 3 chr4 139903706 139904036 -15726084 + (TGGA)n Simple_repeat Simple_repeat 1 335 0 7 1652 371 179 0 21 chr4 139904062 139904159 -15725961 + (TGGA)n Simple_repeat Simple_repeat 2 96 0 7 1652 201 240 30 10 chr4 139904246 139904347 -15725773 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 7 1652 1241 331 87 41 chr4 139905321 139906036 -15724084 + Lx9 LINE L1 6882 7629 -15 7 1652 485 171 30 33 chr4 139907154 139907426 -15722694 + (TGAA)n Simple_repeat Simple_repeat 1 271 0 7 1652 350 248 107 19 chr4 139909673 139909776 -15720344 + PB1D10 SINE Alu 5 116 -1 7 1652 183 330 33 0 chr4 139910071 139910162 -15719958 + MIR SINE MIR 67 160 -102 7 1652 465 219 0 0 chr4 139910352 139910471 -15719649 + (TG)n Simple_repeat Simple_repeat 2 120 0 7 1652 234 271 44 53 chr4 139912601 139912714 -15717406 - MLT1H1 LTR MaLR -378 177 66 7 1652 979 275 71 39 chr4 139913069 139913325 -15716795 + B4A SINE B4 4 270 -22 7 1652 414 0 0 0 chr4 139913325 139913371 -15716749 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1652 979 275 71 39 chr4 139913371 139913394 -15716726 + B4A SINE B4 271 292 0 7 1652 180 224 0 0 chr4 139913420 139913487 -15716633 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1652 303 202 0 0 chr4 139913525 139913624 -15716496 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 1652 343 294 7 0 chr4 139913640 139913783 -15716337 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 1652 296 48 24 0 chr4 139913805 139913847 -15716273 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1652 255 61 0 0 chr4 139914029 139914062 -15716058 + (CCCTAA)n Simple_repeat Simple_repeat 1 33 0 7 1652 854 166 7 7 chr4 139914490 139914642 -15715478 - URR1B DNA MER1_type 0 225 74 7 1652 1432 79 11 0 chr4 139915171 139915360 -15714760 - B2_Mm1t SINE B2 -2 191 1 7 1652 207 330 25 76 chr4 139915507 139915625 -15714495 - MIRm SINE MIR -149 127 16 7 1652 278 282 49 80 chr4 139916794 139916956 -15713164 + RMER15 LTR ERVL 1 157 -418 7 1652 468 276 227 4 chr4 139916967 139917196 -15712924 + RMER15 LTR ERVL 296 575 0 7 1652 241 224 0 38 chr4 139917828 139917907 -15712213 - B3 SINE B2 0 216 141 7 1652 1003 175 23 0 chr4 139917927 139918104 -15712016 - B3A SINE B2 -16 182 2 7 1652 467 211 11 0 chr4 139918188 139918278 -15711842 + PB1D10 SINE Alu 18 108 -9 7 1652 204 167 59 7 chr4 139918769 139918844 -15711276 - MIRc SINE MIR -62 206 123 7 1652 190 312 0 0 chr4 139920128 139920192 -15709928 - MIR SINE MIR -83 125 62 7 1652 1055 215 137 19 chr4 139920240 139920496 -15709624 + B4A SINE B4 1 286 -6 7 1652 855 140 0 0 chr4 139921511 139921654 -15708466 + (CA)n Simple_repeat Simple_repeat 1 143 0 7 1652 404 264 16 32 chr4 139921714 139921839 -15708281 + MIR SINE MIR 68 190 -72 7 1652 462 18 0 0 chr4 139921905 139921960 -15708160 + (ACTG)n Simple_repeat Simple_repeat 4 58 0 7 1652 201 303 60 10 chr4 139922792 139922892 -15707228 + MIRc SINE MIR 17 121 -147 7 1652 258 105 0 0 chr4 139923152 139923190 -15706930 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1652 357 265 41 0 chr4 139923529 139923627 -15706493 + B4A SINE B4 9 110 -182 7 1652 414 313 45 0 chr4 139923876 139924010 -15706110 + B4A SINE B4 152 291 -1 7 1652 671 272 147 19 chr4 139925168 139925427 -15704693 + B4 SINE B4 1 292 0 7 1652 208 333 12 12 chr4 139925459 139925541 -15704579 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 7 1652 188 61 61 0 chr4 139925553 139925586 -15704534 + (CATA)n Simple_repeat Simple_repeat 1 35 0 7 1652 413 300 41 50 chr4 139925587 139925808 -15704312 - RMER12 LTR ERVK -334 988 770 7 1652 503 259 4 0 chr4 139925815 139926057 -15704063 + (CA)n Simple_repeat Simple_repeat 1 243 0 7 1652 272 333 189 18 chr4 139926169 139926386 -15703734 - MLT1A1 LTR MaLR -32 376 123 7 1652 270 320 13 0 chr4 139926720 139926795 -15703325 - L2a LINE L2 -1 3425 3350 7 1652 547 294 7 33 chr4 139926895 139927046 -15703074 + RSINE1 SINE B4 8 154 -11 7 1652 222 247 156 95 chr4 139928029 139928208 -15701912 - MIR3 SINE MIR -16 192 3 7 1652 854 211 139 0 chr4 139928235 139928444 -15701676 + B4 SINE B4 40 277 -15 7 1652 378 0 0 0 chr4 139928448 139928490 -15701630 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1652 252 0 0 0 chr4 139928490 139928517 -15701603 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1652 483 18 0 0 chr4 139928517 139928572 -15701548 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 1652 180 0 0 0 chr4 139928572 139928591 -15701529 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 7 1652 3508 209 55 36 chr4 139929450 139929853 -15700267 - Lx6 LINE L1 -182 7278 6893 7 1652 270 0 0 0 chr4 139929853 139929883 -15700237 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1652 3508 209 55 36 chr4 139929883 139930237 -15699883 - Lx6 LINE L1 -568 6892 6508 7 1652 2719 161 0 2 chr4 139930238 139930718 -15699402 + L1_Mur3 LINE L1 3903 4381 -1499 7 1652 1250 201 22 20 chr4 139930908 139931269 -15698851 + MTD LTR MaLR 13 419 0 7 1652 288 281 90 35 chr4 139931378 139931522 -15698598 - MIRm SINE MIR -123 153 2 7 1652 330 331 165 35 chr4 139931859 139932197 -15697923 + LTR16A LTR ERVL 21 402 -49 7 1652 275 125 125 0 chr4 139932327 139932383 -15697737 - PB1D10 SINE Alu -8 109 47 7 1652 507 282 43 38 chr4 139932552 139932796 -15697324 + LTR29 LTR ERV1 205 492 -152 7 1652 262 292 111 72 chr4 139933604 139933874 -15696246 + MTEb LTR MaLR 6 322 -57 7 1652 665 182 0 21 chr4 139933874 139934014 -15696106 + ORR1B1 LTR MaLR 1 137 -257 7 1652 1741 127 22 47 chr4 139934054 139934376 -15695744 + ORR1B1 LTR MaLR 80 393 -1 7 1652 214 284 0 58 chr4 139935019 139935105 -15695015 + GA-rich Low_complexity Low_complexity 2 82 0 7 1652 209 412 33 8 chr4 139935545 139935665 -15694455 + MIRb SINE MIR 31 153 -115 7 1652 205 152 0 0 chr4 139935783 139935816 -15694304 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1652 381 291 193 18 chr4 139935869 139936149 -15693971 + Helitron1Nb_Mam RC Helitron 17 345 -771 7 1652 986 248 54 71 chr4 139936169 139936464 -15693656 + B4A SINE B4 3 292 0 7 1652 606 296 35 26 chr4 139937240 139937469 -15692651 + B4A SINE B4 12 242 -50 7 1652 365 328 98 14 chr4 139937738 139937965 -15692155 - MER2 DNA MER2_type -21 324 75 7 1652 1146 252 25 114 chr4 139938062 139938456 -15691664 + MTE2a LTR MaLR 21 379 0 8 1652 394 369 0 18 chr4 139938965 139939128 -15690992 - MIRc SINE MIR -55 213 54 8 1652 331 338 54 7 chr4 139939689 139939838 -15690282 + MLT1K LTR MaLR 156 311 -284 8 1652 673 288 34 12 chr4 139939913 139940137 -15689983 + MTEa LTR MaLR 126 379 0 8 1652 278 356 17 0 chr4 139940321 139940436 -15689684 + MIRb SINE MIR 58 174 -94 8 1652 465 19 0 0 chr4 139941211 139941265 -15688855 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1652 642 250 14 0 chr4 139942131 139942271 -15687849 - ID_B1 SINE B4 -1 223 82 8 1652 287 336 152 14 chr4 139942483 139942706 -15687414 - LTR16A1 LTR ERVL -4 452 199 8 1652 216 67 0 0 chr4 139942738 139942768 -15687352 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1652 211 308 70 70 chr4 139942960 139943089 -15687031 - MIR SINE MIR -88 174 46 8 1652 204 321 78 52 chr4 139943208 139943323 -15686797 + MIR SINE MIR 36 153 -55 8 1652 561 225 243 45 chr4 139943847 139944008 -15686112 + B3 SINE B2 1 203 -13 8 1652 342 0 0 0 chr4 139944008 139944046 -15686074 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1652 561 225 243 45 chr4 139944046 139944061 -15686059 + B3 SINE B2 204 212 -4 8 1652 283 250 129 12 chr4 139944082 139944167 -15685953 + B4A SINE B4 2 96 -196 8 1652 416 296 35 0 chr4 139944189 139944304 -15685816 + B4 SINE B4 170 288 -4 8 1652 425 353 7 0 chr4 139944307 139944457 -15685663 + (CA)n Simple_repeat Simple_repeat 2 152 0 8 1652 268 248 115 39 chr4 139945311 139945441 -15684679 + MLT1A1 LTR MaLR 268 407 -1 8 1652 210 288 0 17 chr4 139947145 139947205 -15682915 - MIR3 SINE MIR -32 176 118 8 1652 330 264 66 8 chr4 139948243 139948365 -15681755 + Charlie15a DNA MER1_type 96 224 0 8 1652 271 60 40 0 chr4 139948752 139948802 -15681318 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 8 1652 1354 100 27 9 chr4 139948813 139949255 -15680865 + (TCCA)n Simple_repeat Simple_repeat 1 450 0 8 1652 215 133 22 0 chr4 139949258 139949303 -15680817 + (CATA)n Simple_repeat Simple_repeat 1 46 0 8 1652 286 293 75 60 chr4 139949365 139949602 -15680518 - L2c LINE L2 -205 3182 2931 8 1652 684 155 0 0 chr4 139949804 139949946 -15680174 + (CA)n Simple_repeat Simple_repeat 1 142 0 8 1652 450 224 0 0 chr4 139950564 139950680 -15679440 + (CACCAT)n Simple_repeat Simple_repeat 2 117 0 8 1652 264 384 57 44 chr4 139950710 139950868 -15679252 - MIRb SINE MIR -8 260 101 8 1652 270 329 53 7 chr4 139951472 139951622 -15678498 - MIR SINE MIR -35 227 71 8 1652 200 111 28 0 chr4 139951697 139951733 -15678387 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1652 467 215 17 6 chr4 139951829 139952007 -15678113 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1652 428 161 8 24 chr4 139952073 139952200 -15677920 + (CA)n Simple_repeat Simple_repeat 1 125 0 8 1652 251 289 5 35 chr4 139953596 139953697 -15676423 - ORR1E LTR MaLR -2 377 261 8 1652 703 276 42 4 chr4 139953934 139954171 -15675949 - RLTR16 LTR ERVK -207 298 53 8 1652 437 278 42 63 chr4 139954183 139954324 -15675796 - ORR1E LTR MaLR -63 296 159 8 1652 1104 95 18 0 chr4 139954324 139954492 -15675628 + B2_Mm1t SINE B2 1 171 -22 8 1652 261 204 0 36 chr4 139954534 139954590 -15675530 + B2_Mm2 SINE B2 48 101 -94 8 1652 210 105 0 0 chr4 139954608 139954646 -15675474 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 8 1652 613 218 103 0 chr4 139954653 139954809 -15675311 - ORR1E LTR MaLR -183 176 5 8 1652 989 134 206 6 chr4 139954843 139955023 -15675097 - B3 SINE B2 0 216 1 8 1652 246 197 55 27 chr4 139955028 139955085 -15675035 - ID_B1 SINE B4 0 224 166 8 1652 511 224 28 0 chr4 139955085 139955184 -15674936 - ORR1D2 LTR MaLR 0 370 269 8 1652 1901 100 67 3 chr4 139955184 139955484 -15674636 + ORR1A4 LTR MaLR 1 319 -10 8 1652 906 276 51 0 chr4 139955483 139955740 -15674380 - ORR1D2 LTR MaLR -100 270 1 8 1652 284 186 186 0 chr4 139955742 139955812 -15674308 - ID_B1 SINE B4 -58 166 84 8 1652 214 171 0 0 chr4 139955823 139955864 -15674256 - ID SINE ID -183 41 1 8 1652 241 308 51 51 chr4 139956651 139956788 -15673332 + MIR SINE MIR 113 249 -13 8 1652 662 193 22 22 chr4 139957062 139957200 -15672920 + B1F2 SINE Alu 2 139 -10 8 1652 504 243 154 63 chr4 139957247 139957522 -15672598 + B4 SINE B4 15 272 -20 8 1652 207 380 34 34 chr4 139957586 139957793 -15672327 + MIRb SINE MIR 59 265 -3 8 1652 454 244 64 48 chr4 139958724 139958849 -15671271 - RSINE1 SINE B4 -28 137 11 8 1652 281 190 134 68 chr4 139959212 139959339 -15670781 - MLT1J1 LTR MaLR -317 131 6 8 1652 674 260 116 71 chr4 139959474 139959648 -15670472 - Lx8 LINE L1 -58 7415 7238 8 1652 738 122 171 0 chr4 139959648 139959771 -15670349 + B1_Mus1 SINE Alu 1 144 -4 8 1652 612 40 0 0 chr4 139959776 139959851 -15670269 + (TGGA)n Simple_repeat Simple_repeat 4 78 0 8 1652 674 260 116 71 chr4 139959851 139959997 -15670123 - Lx8 LINE L1 -236 7237 7073 8 1652 597 28 0 0 chr4 139959997 139960068 -15670052 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1652 534 286 62 32 chr4 139960078 139960330 -15669790 - B4A SINE B4 -33 259 1 8 1652 1615 21 11 0 chr4 139960480 139960666 -15669454 - B2_Mm1a SINE B2 -5 188 1 8 1652 257 274 125 12 chr4 139960666 139960867 -15669253 - ORR1D2 LTR MaLR -2 368 106 8 1652 1432 277 55 22 chr4 139960910 139961398 -15668722 - RMER5 LTR ERV1 -18 516 13 8 1652 531 182 0 0 chr4 139961739 139961860 -15668260 + (TG)n Simple_repeat Simple_repeat 1 121 0 8 1652 571 272 123 15 chr4 139961863 139962124 -15667996 - B4 SINE B4 -3 289 1 8 1652 390 140 11 23 chr4 139962179 139962267 -15667853 + G-rich Low_complexity Low_complexity 4 90 0 8 1652 2208 159 10 39 chr4 139963031 139963418 -15666702 + ORR1C1 LTR MaLR 1 376 -2 8 1652 602 318 68 0 chr4 139963634 139963826 -15666294 + ID_B1 SINE B4 3 207 -17 8 1652 1091 271 99 6 chr4 139965412 139965746 -15664374 + MTEa LTR MaLR 1 365 -14 8 1652 642 362 21 25 chr4 139965776 139966300 -15663820 + L1ME1 LINE L1 4769 5290 -856 8 1652 551 258 149 19 chr4 139966399 139966707 -15663413 + L1ME1 LINE L1 5478 5825 -354 8 1652 568 210 8 24 chr4 139966911 139967038 -15663082 + RSINE1 SINE B4 8 132 -33 8 1652 2352 64 0 7 chr4 139967085 139967383 -15662737 + L1Md_F2 LINE L1 6276 6571 -11 8 1652 1147 61 0 39 chr4 139967562 139967715 -15662405 - B1_Mus1 SINE Alu 0 148 2 8 1652 316 330 93 42 chr4 139968069 139968262 -15661858 + MLT1F1 LTR MaLR 367 569 0 8 1652 579 29 0 0 chr4 139968508 139968577 -15661543 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 1652 859 167 0 16 chr4 139969313 139969496 -15660624 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 1652 336 282 16 106 chr4 139969749 139969872 -15660248 + B1F SINE Alu 20 131 -18 8 1652 209 180 0 20 chr4 139969882 139969933 -15660187 + GA-rich Low_complexity Low_complexity 4 53 0 8 1652 307 282 42 0 chr4 139970008 139970079 -15660041 + L2c LINE L2 3314 3387 0 8 1652 266 333 22 11 chr4 139970092 139970183 -15659937 - MIRb SINE MIR -141 127 36 8 1652 493 361 114 6 chr4 139970438 139970753 -15659367 + MER63C DNA AcHobo 43 391 -539 8 1652 771 226 0 84 chr4 139971003 139971182 -15658938 + RSINE1 SINE B4 2 165 0 8 1652 651 215 43 19 chr4 139971492 139971639 -15658481 + ID_B1 SINE B4 60 212 -12 8 1652 558 0 0 0 chr4 139971639 139971701 -15658419 + (CAAAA)n Simple_repeat Simple_repeat 3 64 0 8 1652 651 215 43 19 chr4 139971701 139971714 -15658406 + ID_B1 SINE B4 213 224 0 8 1652 2088 119 10 90 chr4 139972585 139972973 -15657147 - ORR1B1 LTR MaLR -8 386 30 8 1652 215 300 39 29 chr4 139973219 139973322 -15656798 + (TGGG)n Simple_repeat Simple_repeat 3 106 0 8 1652 1076 85 56 0 chr4 139973415 139973859 -15656261 + (TGGA)n Simple_repeat Simple_repeat 1 468 0 8 1652 276 100 0 0 chr4 139974794 139974834 -15655286 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 8 1652 621 119 0 0 chr4 139974987 139975088 -15655032 + (TC)n Simple_repeat Simple_repeat 2 102 0 8 1652 251 218 179 18 chr4 139976671 139976783 -15653337 - MIRb SINE MIR -136 132 3 8 1652 224 280 0 0 chr4 139977484 139977534 -15652586 + MIRb SINE MIR 34 83 -185 8 1652 474 306 10 13 chr4 139978392 139978790 -15651330 + GA-rich Low_complexity Low_complexity 1 396 0 8 1652 290 308 15 23 chr4 139978810 139978943 -15651177 + GA-rich Low_complexity Low_complexity 1 132 0 8 1652 409 300 16 33 chr4 139979173 139979343 -15650777 + MamGypLTR2b LTR Gypsy 773 1066 -2 8 1652 1240 248 131 12 chr4 139979849 139980184 -15649936 + MTE2b LTR MaLR 1 375 -4 8 1652 269 297 136 24 chr4 139980945 139981114 -15649006 + MIR SINE MIR 72 259 -3 8 1652 535 283 122 47 chr4 139981240 139981568 -15648552 - MLT1F1 LTR MaLR 0 569 175 8 1652 453 231 176 0 chr4 139981625 139981733 -15648387 - ID_B1 SINE B4 -1 223 97 8 1652 223 196 0 38 chr4 139981877 139981930 -15648190 + L2c LINE L2 3030 3080 -307 8 1652 483 181 11 48 chr4 139982354 139982540 -15647580 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1652 527 194 18 24 chr4 139982560 139982949 -15647171 + (CA)n Simple_repeat Simple_repeat 1 386 0 8 1652 779 127 40 0 chr4 139983853 139984026 -15646094 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 1652 598 227 106 7 chr4 139984035 139984136 -15645984 + B3 SINE B2 51 164 -52 8 1652 471 35 0 0 chr4 139984136 139984193 -15645927 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1652 598 227 106 7 chr4 139984193 139984242 -15645878 + B3 SINE B2 165 216 0 8 1652 229 222 19 0 chr4 139984335 139984389 -15645731 + B4 SINE B4 14 68 -224 8 1652 196 296 116 31 chr4 139984446 139984575 -15645545 - L2c LINE L2 -227 3160 3021 8 1652 877 206 0 17 chr4 139984581 139984759 -15645361 + ORR1C2 LTR MaLR 5 179 -195 8 1652 378 174 0 0 chr4 139984787 139984896 -15645224 + (TG)n Simple_repeat Simple_repeat 2 110 0 8 1653 952 201 24 19 chr4 139984918 139985131 -15644989 + ORR1C2 LTR MaLR 171 384 0 8 1653 419 308 11 23 chr4 139986650 139986826 -15643294 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 8 1653 269 346 52 0 chr4 139986765 139986901 -15643219 + (CATG)n Simple_repeat Simple_repeat 4 146 0 8 1653 275 161 18 0 chr4 139987595 139987651 -15642469 + G-rich Low_complexity Low_complexity 4 60 0 8 1653 426 20 0 0 chr4 139988352 139988403 -15641717 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1653 279 282 12 49 chr4 139989368 139989450 -15640670 + ID4 SINE ID 5 83 0 8 1653 1083 227 47 70 chr4 139990398 139990697 -15639423 - B4A SINE B4 0 292 1 8 1653 254 100 0 0 chr4 139991368 139991411 -15638709 + MIR SINE MIR 111 154 -54 8 1653 441 204 214 0 chr4 139992544 139992642 -15637478 + PB1 SINE Alu 2 120 -7 9 1653 331 253 0 12 chr4 139992658 139992742 -15637378 + ID4 SINE ID 1 83 0 9 1653 651 142 18 18 chr4 139992809 139992974 -15637146 + (TG)n Simple_repeat Simple_repeat 2 166 0 9 1653 288 160 33 16 chr4 139992990 139993111 -15637009 + (TG)n Simple_repeat Simple_repeat 1 123 0 9 1653 281 339 32 8 chr4 139993133 139993258 -15636862 - RSINE1 SINE B4 0 165 38 9 1653 432 0 0 0 chr4 139993259 139993307 -15636813 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1653 234 368 48 9 chr4 139994183 139994306 -15635814 - MIRc SINE MIR -47 161 32 9 1653 825 158 0 0 chr4 139994559 139994736 -15635384 + (CA)n Simple_repeat Simple_repeat 2 178 0 9 1653 864 178 0 0 chr4 139994748 139994928 -15635192 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1653 405 218 148 43 chr4 139996833 139996948 -15633172 + B1F1 SINE Alu 3 129 -20 9 1653 728 251 14 58 chr4 139996953 139997160 -15632960 - B3A SINE B2 0 198 1 9 1653 356 239 44 44 chr4 139997237 139997351 -15632769 + B1F SINE Alu 32 145 -4 9 1653 340 272 113 9 chr4 139997438 139997553 -15632567 - MIR SINE MIR -32 230 104 9 1653 735 283 101 98 chr4 139998419 139998787 -15631333 + MTE2a LTR MaLR 11 379 0 9 1653 540 227 76 93 chr4 139998987 139999281 -15630839 + RMER2 LTR ERV1 1 399 -168 9 1653 182 323 48 0 chr4 139999641 139999703 -15630417 + MIR SINE MIR 105 169 -93 9 1653 292 287 67 44 chr4 139999805 139999940 -15630180 + YREP_Mm Unknown Unknown 159 296 -1516 9 1653 975 174 23 0 chr4 139999826 139999998 -15630122 - ID_B1 SINE B4 -6 218 43 9 1653 213 128 26 0 chr4 140000000 140000039 -15630081 - ID SINE ID -184 40 1 1 1653 252 234 30 30 chr4 140000543 140000609 -15629511 - MLT1J2 LTR MaLR 0 448 383 2 1653 253 306 12 0 chr4 140000664 140000749 -15629371 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1653 433 211 219 0 chr4 140000790 140000918 -15629202 - B4 SINE B4 -97 195 40 4 1653 244 338 41 75 chr4 140001333 140001480 -15628640 + MER2B DNA MER2_type 175 316 -20 5 1653 424 241 7 7 chr4 140003102 140003240 -15626880 + (TG)n Simple_repeat Simple_repeat 1 138 0 6 1653 388 279 93 0 chr4 140003322 140003451 -15626669 - B4A SINE B4 0 292 152 7 1653 210 284 5 5 chr4 140004082 140004268 -15625852 + GA-rich Low_complexity Low_complexity 1 186 0 8 1653 219 369 0 26 chr4 140004234 140004348 -15625772 + G-rich Low_complexity Low_complexity 4 114 0 9 1653 682 312 52 35 chr4 140004355 140004584 -15625536 + B4A SINE B4 60 292 0 1 1653 195 232 0 0 chr4 140004620 140004676 -15625444 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1653 316 252 83 18 chr4 140005250 140005264 -15624856 + B1F SINE Alu 34 149 0 1 1653 406 226 21 21 chr4 140005264 140005359 -15624761 + ID_B1 SINE B4 130 224 0 1 1653 243 133 0 0 chr4 140005749 140005794 -15624326 + (G)n Simple_repeat Simple_repeat 1 45 0 1 1653 722 317 58 22 chr4 140006065 140006339 -15623781 + B4A SINE B4 9 292 0 1 1653 962 132 9 0 chr4 140006666 140006986 -15623134 + (TG)n Simple_repeat Simple_repeat 1 323 0 1 1653 305 291 162 68 chr4 140006993 140007420 -15622700 + L1MD LINE L1 3626 4092 -2054 1 1653 801 298 44 69 chr4 140008858 140009381 -15620739 + L1MA4A LINE L1 5503 6042 -261 1 1653 774 0 0 0 chr4 140009583 140009669 -15620451 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1 1653 1245 96 0 0 chr4 140009671 140009849 -15620271 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 2 1653 456 19 0 0 chr4 140009849 140009902 -15620218 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 2 1653 230 224 179 0 chr4 140010175 140010242 -15619878 - B4A SINE B4 -66 226 148 2 1653 406 348 0 69 chr4 140010278 140010451 -15619669 - B4A SINE B4 -131 161 1 2 1653 445 229 36 9 chr4 140010460 140010570 -15619550 - PB1D9 SINE Alu -7 113 1 2 1653 1425 90 16 0 chr4 140010625 140010814 -15619306 + B2_Mm2 SINE B2 2 193 -2 2 1653 673 277 10 15 chr4 140011445 140011643 -15618477 + B3A SINE B2 2 198 0 2 1653 290 308 28 46 chr4 140011935 140012044 -15618076 + B4A SINE B4 186 292 0 2 1653 291 113 0 0 chr4 140012059 140012112 -15618008 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1653 706 183 0 0 chr4 140012165 140012285 -15617835 - B1_Mur1 SINE Alu -29 120 1 2 1653 238 309 15 0 chr4 140012515 140012583 -15617537 - ID4 SINE ID -3 80 12 3 1653 395 196 17 39 chr4 140013364 140013544 -15616576 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 1653 400 151 44 44 chr4 140013568 140013748 -15616372 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1653 432 221 23 47 chr4 140013749 140013920 -15616200 + (TATATG)n Simple_repeat Simple_repeat 5 171 0 3 1653 327 192 22 44 chr4 140013921 140014101 -15616019 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1653 280 336 9 0 chr4 140015654 140015669 -15614451 - MT2A LTR ERVL -424 109 2 3 1653 472 228 0 0 chr4 140015669 140015761 -15614359 - MTE2a LTR MaLR -286 93 2 3 1653 1106 114 69 0 chr4 140015762 140015937 -15614183 + B2_Mm2 SINE B2 1 187 -8 3 1653 220 258 0 83 chr4 140016065 140016137 -15613983 + B4A SINE B4 85 150 -142 3 1653 330 290 0 12 chr4 140016080 140016185 -15613935 + B1F SINE Alu 11 109 -8 3 1653 1247 259 48 14 chr4 140016268 140016621 -15613499 - ORR1D2 LTR MaLR -5 365 1 3 1653 971 262 108 25 chr4 140016724 140017058 -15613062 + MTEb LTR MaLR 9 361 -9 4 1653 204 364 23 0 chr4 140017835 140017923 -15612197 + MIRc SINE MIR 74 163 -105 4 1653 337 310 112 26 chr4 140019398 140019630 -15610490 + L1M5 LINE L1 5411 5662 -502 4 1653 238 288 32 19 chr4 140019652 140019808 -15610312 + (TG)n Simple_repeat Simple_repeat 1 158 0 4 1653 267 247 24 24 chr4 140019873 140019956 -15610164 + L1MC LINE L1 5740 5822 -2060 4 1653 417 320 7 39 chr4 140019959 140020112 -15610008 + RSINE1 SINE B4 1 148 -17 4 1653 376 98 24 24 chr4 140020163 140020247 -15609873 + (TCTCTG)n Simple_repeat Simple_repeat 4 87 0 4 1653 420 20 0 0 chr4 140020247 140020296 -15609824 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1653 225 286 94 36 chr4 140020382 140020520 -15609600 - MER2 DNA MER2_type -3 342 197 4 1653 939 221 35 0 chr4 140020622 140020821 -15609299 + ID_B1 SINE B4 16 221 -3 4 1653 762 260 34 37 chr4 140021065 140021333 -15608787 - B4A SINE B4 -25 267 1 5 1653 214 298 66 19 chr4 140022665 140022771 -15607349 - MIR3 SINE MIR -22 186 76 5 1653 258 211 18 0 chr4 140022824 140022881 -15607239 + RSINE1 SINE B4 99 156 -9 5 1653 1044 99 0 0 chr4 140023810 140024056 -15606064 + (CA)n Simple_repeat Simple_repeat 1 246 0 5 1653 227 299 22 54 chr4 140024449 140024541 -15605579 - MIRb SINE MIR -115 153 65 5 1653 348 24 0 0 chr4 140024547 140024588 -15605532 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1653 698 280 19 77 chr4 140024590 140024758 -15605362 - ID_B1 SINE B4 -26 198 42 5 1653 3177 59 13 8 chr4 140024758 140025152 -15604968 + MTA_Mm LTR MaLR 1 396 0 5 1653 698 280 19 77 chr4 140025152 140025192 -15604928 - ID SINE ID -183 41 2 5 1653 633 319 65 4 chr4 140025752 140025982 -15604138 + MER58B DNA MER1_type 20 263 -78 5 1653 417 254 38 38 chr4 140026869 140026898 -15603222 - B4A SINE B4 -39 253 229 5 1653 1104 174 74 5 chr4 140026898 140027100 -15603020 - B3 SINE B2 0 216 1 6 1653 417 254 38 38 chr4 140027100 140027201 -15602919 - B4A SINE B4 -64 228 123 5 1653 539 285 63 32 chr4 140027921 140028150 -15601970 + MIR SINE MIR 12 250 -12 6 1653 1633 142 24 309 chr4 140029492 140030166 -15599954 + RLTR45 LTR ERVK 1 482 0 6 1653 275 256 44 0 chr4 140030377 140030467 -15599653 + L2a LINE L2 3280 3373 -53 6 1653 483 258 15 51 chr4 140030477 140030667 -15599453 + MTE2b LTR MaLR 25 187 -192 6 1653 244 211 28 128 chr4 140030683 140030792 -15599328 + MTE2b LTR MaLR 274 371 -8 6 1653 1351 99 15 35 chr4 140033186 140033384 -15596736 + B2_Mm2 SINE B2 1 194 -1 6 1653 854 177 127 14 chr4 140033504 140033716 -15596404 - MTEa LTR MaLR -7 372 137 6 1653 232 113 17 102 chr4 140034362 140034421 -15595699 + L2b LINE L2 3121 3174 -201 6 1653 1181 234 134 9 chr4 140034524 140034860 -15595260 + MTEa LTR MaLR 1 378 -1 6 1653 182 37 37 0 chr4 140036117 140036144 -15593976 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 6 1653 427 0 96 0 chr4 140036555 140036638 -15593482 + (TCTCC)n Simple_repeat Simple_repeat 1 91 0 7 1653 243 211 58 0 chr4 140037076 140037128 -15592992 - PB1D7 SINE Alu -1 119 65 7 1653 2605 63 25 0 chr4 140037136 140037455 -15592665 - ORR1A2 LTR MaLR 0 327 1 7 1653 575 311 0 0 chr4 140037512 140037692 -15592428 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1653 389 299 17 8 chr4 140037754 140037872 -15592248 - B4A SINE B4 0 292 174 7 1653 767 291 16 1 chr4 140038113 140038320 -15591800 + ID_B1 SINE B4 5 229 -63 7 1653 361 279 19 108 chr4 140038194 140038351 -15591769 + B1F SINE Alu 6 148 -1 7 1653 450 377 29 8 chr4 140038377 140038615 -15591505 + MER2 DNA MER2_type 88 330 -15 7 1653 1422 219 109 27 chr4 140039917 140040292 -15589828 - MTD LTR MaLR 0 419 14 7 1653 810 113 20 0 chr4 140040301 140040452 -15589668 + (TAGA)n Simple_repeat Simple_repeat 3 156 0 7 1653 1209 106 0 0 chr4 140040483 140040663 -15589457 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1653 405 0 0 0 chr4 140040901 140040946 -15589174 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 8 1653 236 246 32 16 chr4 140040985 140041047 -15589073 - RSINE1 SINE B4 -100 65 3 8 1653 1090 228 65 8 chr4 140041420 140041668 -15588452 + MTEa LTR MaLR 4 265 -114 8 1653 722 270 25 10 chr4 140041671 140041869 -15588251 - MTEb LTR MaLR -11 368 168 8 1653 595 243 185 0 chr4 140041902 140042091 -15588029 - ID_B1 SINE B4 0 224 1 8 1653 852 197 27 11 chr4 140042091 140042267 -15587853 - MTEb LTR MaLR -200 179 1 8 1653 259 303 20 20 chr4 140042363 140042464 -15587656 + MIRm SINE MIR 49 149 -127 8 1653 551 299 14 0 chr4 140043032 140043176 -15586944 + RSINE1 SINE B4 12 157 -8 8 1653 914 113 12 0 chr4 140043181 140043349 -15586771 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 8 1653 482 182 14 0 chr4 140043356 140043499 -15586621 + (CATA)n Simple_repeat Simple_repeat 2 146 0 8 1653 269 368 28 28 chr4 140044010 140044119 -15586001 - MIRb SINE MIR -138 130 22 9 1653 351 235 0 0 chr4 140044190 140044271 -15585849 - PB1D10 SINE Alu 0 117 37 9 1653 460 283 18 36 chr4 140044539 140044704 -15585416 - HAL1-2a_MD LINE L1 -522 2502 2341 9 1653 477 0 0 0 chr4 140044706 140044759 -15585361 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1653 464 245 11 0 chr4 140045561 140045655 -15584465 + PB1D10 SINE Alu 3 97 -20 9 1653 207 0 0 0 chr4 140045665 140045688 -15584432 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 9 1653 1368 94 6 4 chr4 140045689 140046230 -15583890 + (TAGA)n Simple_repeat Simple_repeat 1 542 0 9 1653 250 347 14 0 chr4 140046288 140046360 -15583760 + ID4 SINE ID 2 74 -9 9 1653 1091 216 46 14 chr4 140046421 140046637 -15583483 + ID_B1 SINE B4 2 224 0 9 1653 214 277 0 58 chr4 140047325 140047394 -15582726 + MIRb SINE MIR 123 187 -81 9 1653 425 291 65 19 chr4 140048224 140048378 -15581742 + B4A SINE B4 2 162 -130 1 1653 225 194 137 14 chr4 140048319 140048392 -15581728 + B1_Mm SINE Alu 18 99 -48 1 1653 200 250 0 20 chr4 140048408 140048457 -15581663 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 1653 429 20 0 0 chr4 140048492 140048542 -15581578 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1653 249 151 0 0 chr4 140050042 140050095 -15580025 + CT-rich Low_complexity Low_complexity 2 54 0 1 1653 444 19 0 0 chr4 140050097 140050150 -15579970 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1653 1098 156 0 7 chr4 140051035 140051579 -15578541 + (TGAA)n Simple_repeat Simple_repeat 1 539 0 1 1653 306 73 0 0 chr4 140051587 140051628 -15578492 + (TGAG)n Simple_repeat Simple_repeat 2 42 0 1 1653 188 86 0 28 chr4 140052389 140052425 -15577695 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 1 1653 730 152 0 42 chr4 140052647 140052791 -15577329 - ORR1C1 LTR MaLR -236 142 5 1 1653 347 268 20 10 chr4 140053742 140053840 -15576280 + MIR SINE MIR 28 126 -136 1 1653 399 280 0 0 chr4 140054792 140054898 -15575222 + ID_B1 SINE B4 74 175 -49 1 1653 395 309 0 9 chr4 140054810 140054921 -15575199 + PB1D10 SINE Alu 7 116 -1 1 1653 261 0 0 0 chr4 140055435 140055464 -15574656 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1653 606 265 85 66 chr4 140055466 140055737 -15574383 - B4 SINE B4 -16 276 1 1 1653 4595 67 23 0 chr4 140055982 140056551 -15573569 - MT2B2 LTR ERVL 0 584 3 1 1653 325 287 90 15 chr4 140056551 140056691 -15573429 - MIRb SINE MIR -106 156 7 1 1653 195 279 73 31 chr4 140057034 140057130 -15572990 - MIR SINE MIR -75 133 34 1 1653 312 274 8 35 chr4 140057958 140058061 -15572059 + ID4_ SINE ID 12 115 -37 1 1653 263 360 39 58 chr4 140058460 140058616 -15571504 + MIRb SINE MIR 34 186 -82 1 1653 430 344 0 0 chr4 140059122 140059279 -15570841 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 1 1653 609 236 14 7 chr4 140059301 140059733 -15570387 + (TGGA)n Simple_repeat Simple_repeat 1 434 0 1 1653 273 57 0 0 chr4 140059929 140059964 -15570156 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1653 548 65 0 13 chr4 140060754 140060832 -15569288 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1653 363 44 0 0 chr4 140060832 140060877 -15569243 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1653 892 183 172 0 chr4 140062048 140062228 -15567892 - B3 SINE B2 -5 211 1 1 1653 555 243 36 14 chr4 140062534 140062672 -15567448 - B4 SINE B4 -151 141 1 1 1653 303 264 105 30 chr4 140063988 140064121 -15565999 + RSINE1 SINE B4 23 165 0 1 1653 24 53 0 0 chr4 140064128 140064166 -15565954 + AT_rich Low_complexity Low_complexity 1 38 0 1 1653 202 301 42 3 chr4 140065956 140066027 -15564093 - MIRc SINE MIR -162 106 33 1 1653 180 77 0 0 chr4 140066175 140066201 -15563919 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1653 2645 146 156 12 chr4 140066259 140066759 -15563361 - RMER15 LTR ERVL 0 575 4 1 1653 288 0 0 0 chr4 140066770 140066802 -15563318 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1653 279 0 0 0 chr4 140066802 140066832 -15563288 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1653 354 294 7 0 chr4 140066937 140067083 -15563037 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 1653 227 358 0 0 chr4 140067500 140067567 -15562553 + MLT1A1 LTR MaLR 335 401 -7 1 1653 422 282 19 0 chr4 140067833 140067936 -15562184 + PB1D10 SINE Alu 12 116 -1 1 1653 268 290 0 83 chr4 140068513 140068622 -15561498 - MIR SINE MIR -140 122 23 1 1653 486 0 0 0 chr4 140069456 140069510 -15560610 + (TGAA)n Simple_repeat Simple_repeat 2 55 0 1 1653 238 138 17 17 chr4 140070456 140070515 -15559605 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1653 180 0 0 0 chr4 140070643 140070663 -15559457 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1653 1153 124 42 26 chr4 140071696 140071886 -15558234 - B2_Mm2 SINE B2 0 195 3 1 1653 198 143 0 0 chr4 140072961 140072996 -15557124 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1653 181 277 106 24 chr4 140074432 140074517 -15555603 - MIRb SINE MIR -117 151 60 1 1653 513 209 0 0 chr4 140075106 140075269 -15554851 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1653 597 212 0 0 chr4 140075286 140075465 -15554655 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1653 224 200 14 0 chr4 140075480 140075550 -15554570 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1653 594 202 0 0 chr4 140075564 140075742 -15554378 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1653 563 217 58 0 chr4 140077632 140077752 -15552368 - B1F1 SINE Alu -2 147 21 1 1653 461 282 87 119 chr4 140078078 140078401 -15551719 + B4 SINE B4 2 292 0 1 1653 297 319 0 0 chr4 140078404 140078622 -15551498 + (CA)n Simple_repeat Simple_repeat 1 218 0 1 1653 226 0 0 56 chr4 140079866 140079902 -15550218 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1653 1115 45 30 0 chr4 140079902 140080036 -15550084 - B1_Mus1 SINE Alu -10 138 1 1 1653 262 296 148 0 chr4 140080063 140080151 -15549969 + PB1D10 SINE Alu 1 101 -16 1 1653 199 169 0 44 chr4 140080262 140080330 -15549790 + (CATA)n Simple_repeat Simple_repeat 3 67 0 1 1653 326 221 0 35 chr4 140080366 140080511 -15549609 + (CATA)n Simple_repeat Simple_repeat 3 142 0 1 1653 205 255 0 19 chr4 140080531 140080583 -15549537 + (CATG)n Simple_repeat Simple_repeat 1 51 0 1 1653 387 0 0 0 chr4 140080583 140080626 -15549494 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1653 435 310 35 7 chr4 140080628 140080771 -15549349 + B3 SINE B2 70 216 0 1 1653 204 49 71 24 chr4 140082065 140082107 -15548013 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 1 1653 512 203 153 65 chr4 140082381 140082597 -15547523 + Lx8 LINE L1 7233 7467 -6 1 1653 784 147 109 29 chr4 140082597 140082772 -15547348 + B2_Mm2 SINE B2 6 194 -1 1 1653 500 322 8 0 chr4 140082810 140082928 -15547192 + B3A SINE B2 2 120 -78 1 1653 421 222 0 24 chr4 140082999 140083082 -15547038 + ID4_ SINE ID 2 82 -1 1 1653 585 0 0 0 chr4 140084706 140084771 -15545349 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1653 323 266 13 0 chr4 140086311 140086390 -15543730 + ID4 SINE ID 2 81 -2 1 1653 214 327 107 19 chr4 140086390 140086470 -15543650 + B4A SINE B4 2 174 -118 1 1653 548 264 49 14 chr4 140087393 140087535 -15542585 + RSINE1 SINE B4 2 148 -17 1 1653 461 238 18 6 chr4 140087575 140087740 -15542380 + GA-rich Low_complexity Low_complexity 1 167 0 1 1653 560 217 65 77 chr4 140087740 140087910 -15542210 + B3A SINE B2 27 194 -4 1 1653 214 291 92 72 chr4 140088526 140088678 -15541442 + L2b LINE L2 3192 3346 -29 1 1653 665 249 49 8 chr4 140088861 140089058 -15541062 + MIR SINE MIR 10 213 -49 1 1653 242 249 91 46 chr4 140090055 140090166 -15539954 - MIRc SINE MIR -129 139 19 1 1653 1171 62 7 0 chr4 140090488 140090633 -15539487 + B1_Mus2 SINE Alu 2 147 0 1 1653 603 246 57 71 chr4 140090966 140091176 -15538944 + B4 SINE B4 52 258 -34 1 1653 180 111 0 0 chr4 140091198 140091225 -15538895 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1653 553 341 117 19 chr4 140091401 140091812 -15538308 + MLT2B4 LTR ERVL 25 430 -124 1 1653 528 16 0 0 chr4 140092026 140092087 -15538033 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1653 255 170 0 0 chr4 140092087 140092134 -15537986 + (CCA)n Simple_repeat Simple_repeat 1 47 0 1 1653 181 219 73 0 chr4 140093231 140093272 -15536848 + MIRc SINE MIR 107 150 -118 1 1653 1171 162 38 14 chr4 140093637 140093850 -15536270 - URR1A DNA MER1_type -8 218 1 1 1653 347 312 67 92 chr4 140093850 140093877 -15536243 + CYRA11_Mm Unknown Y-chromosome 179 412 -205 1 1653 1401 39 84 0 chr4 140094185 140094363 -15535757 + B2_Mm2 SINE B2 1 193 -2 1 1653 1172 55 14 0 chr4 140094366 140094511 -15535609 + B1_Mus2 SINE Alu 1 147 0 1 1653 350 319 73 30 chr4 140094629 140094794 -15535326 + MIRb SINE MIR 69 240 -28 1 1653 184 281 78 109 chr4 140095007 140095135 -15534985 - MIRb SINE MIR -118 150 27 1 1653 353 365 100 36 chr4 140096623 140096953 -15533167 + L2b LINE L2 3011 3361 -14 1 1653 491 358 89 34 chr4 140097064 140097301 -15532819 + MLT1C LTR MaLR 8 257 -210 1 1653 819 280 23 9 chr4 140099215 140099435 -15530685 - ID_B1 SINE B4 -1 223 1 1 1653 308 206 15 0 chr4 140100394 140100462 -15529658 + HAL1-3A_ME LINE L1 1959 2027 -831 1 1653 504 227 0 0 chr4 140100462 140100638 -15529482 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1653 531 209 9 9 chr4 140100700 140101019 -15529101 + (CA)n Simple_repeat Simple_repeat 1 319 0 1 1653 1398 103 14 5 chr4 140101318 140101989 -15528131 + (TGGA)n Simple_repeat Simple_repeat 1 677 0 1 1653 724 129 47 0 chr4 140102002 140102172 -15527948 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1 1653 661 177 7 7 chr4 140102138 140102286 -15527834 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 1 1653 205 156 0 0 chr4 140102855 140102887 -15527233 + (CCA)n Simple_repeat Simple_repeat 2 33 0 1 1653 317 266 21 50 chr4 140103675 140103842 -15526278 - MIR3 SINE MIR -41 167 6 1 1653 331 301 3 30 chr4 140104619 140104757 -15525363 + MLT1A1 LTR MaLR 235 403 -5 1 1653 463 213 0 0 chr4 140104894 140104988 -15525132 + RSINE1 SINE B4 3 96 -69 1 1653 230 329 117 41 chr4 140104988 140105065 -15525055 + B2_Mm2 SINE B2 2 185 -10 1 1653 435 295 77 29 chr4 140105329 140105602 -15524518 - B4A SINE B4 0 292 2 1 1653 203 393 41 12 chr4 140105614 140105784 -15524336 - MIR SINE MIR -73 189 15 1 1653 1076 188 9 42 chr4 140106669 140106886 -15523234 + B3 SINE B2 6 215 -1 1 1653 306 326 22 0 chr4 140107225 140107317 -15522803 + MLT1A1 LTR MaLR 12 105 -303 1 1653 273 330 87 48 chr4 140107431 140107660 -15522460 + L2b LINE L2 3114 3351 -24 1 1653 201 354 43 17 chr4 140108763 140108878 -15521242 + MIR SINE MIR 24 141 -67 1 1653 571 252 106 6 chr4 140108886 140109046 -15521074 + B4A SINE B4 2 177 -115 1 1653 867 235 35 11 chr4 140109091 140109318 -15520802 + ID_B1 SINE B4 12 247 -45 2 1653 223 381 116 6 chr4 140109434 140109707 -15520413 + L2b LINE L2 3117 3426 0 2 1653 848 172 160 6 chr4 140109713 140109894 -15520226 + B3 SINE B2 1 209 -7 2 1653 387 0 0 0 chr4 140110018 140110061 -15520059 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1653 1461 191 42 35 chr4 140110085 140110395 -15519725 + MTEa LTR MaLR 1 312 -67 2 1653 353 191 7 45 chr4 140110612 140110729 -15519391 - ORR1B1 LTR MaLR -245 149 12 2 1653 311 324 148 0 chr4 140111235 140111377 -15518743 + Tigger5 DNA MER2_type 7 169 -2237 2 1653 319 302 21 0 chr4 140111640 140111736 -15518384 + Tigger5 DNA MER2_type 2249 2346 -60 2 1653 1230 194 5 0 chr4 140113533 140113749 -15516371 + URR1B DNA MER1_type 1 217 -8 2 1653 296 275 165 0 chr4 140114561 140114670 -15515450 - MIR3 SINE MIR -31 177 51 2 1653 648 214 0 0 chr4 140114802 140114980 -15515140 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1653 614 243 3 0 chr4 140114992 140115301 -15514819 + (CA)n Simple_repeat Simple_repeat 1 310 0 2 1653 357 305 38 0 chr4 140115523 140115628 -15514492 + B1F SINE Alu 1 109 -40 2 1653 218 224 69 0 chr4 140115680 140115738 -15514382 + ID SINE ID 6 67 -157 2 1653 203 154 30 30 chr4 140115745 140115812 -15514308 + GA-rich Low_complexity Low_complexity 4 70 0 2 1654 759 170 0 0 chr4 140116359 140116512 -15513608 + (CA)n Simple_repeat Simple_repeat 1 153 0 2 1654 197 281 44 22 chr4 140116541 140116632 -15513488 + L2a LINE L2 3025 3117 -309 2 1654 624 106 0 6 chr4 140116761 140116874 -15513246 + B1_Mur2 SINE Alu 17 126 -23 2 1654 547 343 70 10 chr4 140116882 140117000 -15513120 + B4 SINE B4 81 204 -88 2 1654 945 201 98 0 chr4 140117000 140117184 -15512936 + B3 SINE B2 1 202 -14 2 1654 547 343 70 10 chr4 140117184 140117265 -15512855 + B4 SINE B4 205 292 0 2 1654 599 261 0 3 chr4 140117271 140117625 -15512495 + (CA)n Simple_repeat Simple_repeat 1 352 0 2 1654 1372 143 28 9 chr4 140117721 140117933 -15512187 + B3 SINE B2 1 216 0 2 1654 318 305 22 66 chr4 140118099 140118236 -15511884 + MIR SINE MIR 1 131 -137 2 1654 344 200 8 24 chr4 140119087 140119210 -15510910 + GA-rich Low_complexity Low_complexity 2 122 0 2 1654 576 0 0 0 chr4 140119645 140119709 -15510411 + (CCTG)n Simple_repeat Simple_repeat 4 67 0 2 1654 1980 109 22 7 chr4 140120517 140120912 -15509208 + ORR1A3 LTR MaLR 1 386 -8 2 1654 542 114 11 0 chr4 140122230 140122318 -15507802 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 2 1654 1251 54 0 0 chr4 140122319 140122466 -15507654 - B1_Mus1 SINE Alu 0 148 2 2 1654 648 251 219 14 chr4 140123062 140123357 -15506763 + MTEa LTR MaLR 17 372 -7 2 1654 267 31 0 0 chr4 140123877 140123909 -15506211 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 2 1654 594 298 18 12 chr4 140125116 140125279 -15504841 + RSINE1 SINE B4 2 165 0 2 1654 576 236 0 0 chr4 140125329 140125507 -15504613 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1654 261 311 0 112 chr4 140126438 140126554 -15503566 + PB1D7 SINE Alu 7 112 -8 2 1654 1059 243 18 9 chr4 140126563 140126783 -15503337 + ID_B1 SINE B4 3 224 0 2 1654 733 95 59 6 chr4 140126978 140127148 -15502972 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1654 670 47 57 40 chr4 140127177 140127354 -15502766 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1654 312 152 0 0 chr4 140128776 140128842 -15501278 + (CAGG)n Simple_repeat Simple_repeat 2 67 0 2 1654 483 219 117 0 chr4 140129877 140130005 -15500115 - B1F1 SINE Alu 0 149 7 2 1654 265 282 0 40 chr4 140130020 140130094 -15500026 + BC1_Mm scRNA scRNA 11 81 -71 2 1654 604 220 17 0 chr4 140130028 140130135 -15499985 + ID_B1 SINE B4 17 125 -99 2 1654 987 255 23 49 chr4 140130135 140130485 -15499635 + RLTR15 LTR ERVK 2 342 -17 2 1654 1041 66 0 0 chr4 140130553 140130704 -15499416 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 1654 363 44 0 0 chr4 140131419 140131464 -15498656 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1654 670 303 151 19 chr4 140131597 140132062 -15498058 + L1MB3 LINE L1 5600 6125 -58 2 1654 595 260 45 0 chr4 140132447 140132590 -15497530 + RSINE1 SINE B4 4 153 -12 2 1654 231 114 0 0 chr4 140132590 140132625 -15497495 + (CG)n Simple_repeat Simple_repeat 1 35 0 2 1654 719 224 19 72 chr4 140132644 140132851 -15497269 + B3A SINE B2 3 198 0 2 1654 201 290 43 0 chr4 140134748 140134817 -15495303 - MIR3 SINE MIR -48 160 89 2 1654 249 33 0 0 chr4 140135439 140135469 -15494651 + (CACCC)n Simple_repeat Simple_repeat 1 30 0 2 1654 180 0 0 0 chr4 140138735 140138755 -15491365 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1654 245 231 67 27 chr4 140139206 140139329 -15490791 + MIRb SINE MIR 46 173 -95 2 1654 311 257 95 0 chr4 140140089 140140163 -15489957 + MIRb SINE MIR 50 130 -138 2 1654 229 373 12 91 chr4 140141880 140142045 -15488075 - MIRm SINE MIR -100 176 25 2 1654 462 181 32 11 chr4 140142081 140142183 -15487937 - PB1D10 SINE Alu -30 119 11 2 1654 234 233 206 0 chr4 140142134 140142207 -15487913 - B4A SINE B4 -147 145 58 2 1654 1368 101 21 0 chr4 140142220 140142408 -15487712 + B2_Mm1t SINE B2 2 193 0 2 1654 340 278 8 42 chr4 140143266 140143332 -15486788 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 2 1654 1020 132 0 0 chr4 140143332 140143498 -15486622 + (TGGG)n Simple_repeat Simple_repeat 1 166 0 2 1654 1179 153 2 9 chr4 140143498 140143730 -15486390 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 2 1654 421 299 104 0 chr4 140143810 140143944 -15486176 - MER63B DNA AcHobo 0 436 289 2 1654 215 79 26 0 chr4 140144264 140144302 -15485818 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 2 1654 255 176 74 58 chr4 140144353 140144434 -15485686 + MIRb SINE MIR 58 144 -64 2 1654 393 210 186 20 chr4 140145575 140145677 -15484443 + PB1D9 SINE Alu 1 119 -1 2 1654 204 125 0 0 chr4 140146056 140146088 -15484032 + (TCTCCC)n Simple_repeat Simple_repeat 3 34 0 2 1654 881 274 37 0 chr4 140146088 140146303 -15483817 - ID_B1 SINE B4 0 224 2 2 1654 1381 57 22 11 chr4 140146447 140146625 -15483495 + B2_Mm2 SINE B2 2 181 -14 2 1654 248 231 0 0 chr4 140146681 140146733 -15483387 + B3 SINE B2 47 98 -118 2 1654 314 295 411 13 chr4 140148488 140148651 -15481469 - B4 SINE B4 -41 251 24 2 1654 1890 233 115 52 chr4 140150274 140150360 -15479760 + RCHARR1 DNA MER1_type 281 370 -604 2 1654 1489 74 16 0 chr4 140150360 140150550 -15479570 + B2_Mm2 SINE B2 2 194 -1 2 1654 1890 233 115 52 chr4 140150550 140151115 -15479005 + RCHARR1 DNA MER1_type 371 973 -1 2 1654 529 198 2 1 chr4 140151243 140151343 -15478777 + RSINE1 SINE B4 1 101 -123 2 1654 300 257 80 52 chr4 140151404 140151654 -15478466 + RMER17C LTR ERVK 90 346 -64 2 1654 422 146 12 0 chr4 140151718 140151800 -15478320 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1654 486 0 0 0 chr4 140151800 140151854 -15478266 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 1654 1121 62 20 14 chr4 140151878 140152025 -15478095 - B1_Mus1 SINE Alu 0 148 1 2 1654 1662 186 106 62 chr4 140152108 140152476 -15477644 + ORR1C2 LTR MaLR 1 384 0 2 1654 1533 226 106 19 chr4 140152476 140152900 -15477220 + ORR1C2-int LTR MaLR 1 461 -1048 2 1654 251 301 117 11 chr4 140152869 140152963 -15477157 + ORR1C2-int LTR MaLR 362 465 -1115 2 1654 818 111 7 62 chr4 140152948 140153092 -15477028 + MTC LTR MaLR 226 361 -60 2 1654 258 32 0 0 chr4 140153150 140153181 -15476939 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1654 1221 62 0 0 chr4 140153181 140153327 -15476793 - B1_Mm SINE Alu 0 147 2 2 1654 850 110 239 25 chr4 140153658 140153817 -15476303 + B2_Mm2 SINE B2 2 194 -1 2 1654 200 200 39 20 chr4 140153839 140153890 -15476230 + CT-rich Low_complexity Low_complexity 3 54 0 2 1654 999 230 55 0 chr4 140154446 140154646 -15475474 - ID_B1 SINE B4 -11 213 3 2 1654 527 0 0 16 chr4 140155329 140155393 -15474727 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 1654 990 147 0 20 chr4 140155393 140155536 -15474584 - B1_Mur4 SINE Alu -9 141 2 2 1654 465 200 30 0 chr4 140155547 140155647 -15474473 - B1F SINE Alu 0 149 47 2 1654 599 262 83 0 chr4 140155647 140155792 -15474328 + RSINE1 SINE B4 3 159 -6 2 1654 440 226 0 205 chr4 140155792 140155852 -15474268 - B1F2 SINE Alu -86 63 22 2 1654 564 164 6 28 chr4 140155943 140156125 -15473995 + (CAGCC)n Simple_repeat Simple_repeat 1 178 0 2 1654 442 321 0 0 chr4 140156180 140156286 -15473834 + PB1D10 SINE Alu 1 106 -11 2 1654 218 158 15 0 chr4 140156580 140156630 -15473490 + MIR SINE MIR 111 169 -99 2 1654 886 180 85 28 chr4 140157367 140157579 -15472541 + ID_B1 SINE B4 1 224 0 2 1654 894 118 12 6 chr4 140157582 140157744 -15472376 + (GGGA)n Simple_repeat Simple_repeat 4 166 0 2 1654 466 270 0 43 chr4 140157775 140157891 -15472229 + RSINE1 SINE B4 26 136 -29 2 1654 292 331 61 85 chr4 140157945 140158110 -15472010 - ID_B1 SINE B4 -9 215 55 2 1654 283 353 0 38 chr4 140158581 140158687 -15471433 - MLT1D LTR MaLR 0 505 404 2 1654 1161 138 5 77 chr4 140158713 140158933 -15471187 + URR1B DNA MER1_type 22 225 0 2 1654 574 277 228 4 chr4 140158954 140159208 -15470912 - MLT1D LTR MaLR -192 313 3 2 1654 344 204 30 43 chr4 140159521 140159618 -15470502 + B1_Mur3 SINE Alu 2 111 -9 2 1654 1175 48 0 26 chr4 140159629 140159780 -15470340 + B1_Mm SINE Alu 1 147 0 2 1654 558 43 0 0 chr4 140159780 140159849 -15470271 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2 1654 235 304 0 0 chr4 140161413 140161492 -15468628 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 1654 321 68 0 0 chr4 140161492 140161536 -15468584 - HAL1-3A_ME LINE L1 -840 2018 1975 2 1654 240 250 0 0 chr4 140161536 140161616 -15468504 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1654 403 216 264 0 chr4 140162239 140162406 -15467714 - ID_B1 SINE B4 -12 212 2 2 1654 669 128 0 0 chr4 140162468 140162593 -15467527 + (TC)n Simple_repeat Simple_repeat 2 126 0 3 1654 237 233 135 14 chr4 140162700 140162774 -15467346 + ORR1E LTR MaLR 276 358 -1 3 1654 658 256 65 13 chr4 140163087 140163241 -15466879 + RSINE1 SINE B4 2 163 -2 3 1654 225 173 58 0 chr4 140163243 140163295 -15466825 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 1654 308 265 14 108 chr4 140163295 140163312 -15466808 - MT2B LTR ERVL -333 268 226 3 1654 499 202 0 0 chr4 140163312 140163411 -15466709 - PB1D9 SINE Alu -20 100 2 3 1654 308 265 14 108 chr4 140163411 140163443 -15466677 - MT2B LTR ERVL -333 225 135 3 1654 207 0 0 0 chr4 140163549 140163572 -15466548 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 3 1654 514 320 89 15 chr4 140163640 140163843 -15466277 + MTE2a LTR MaLR 17 234 -145 3 1654 229 286 91 0 chr4 140163967 140164044 -15466076 - MIRb SINE MIR -100 168 85 3 1654 468 0 0 0 chr4 140165079 140165131 -15464989 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1654 22 0 0 0 chr4 140165244 140165266 -15464854 + AT_rich Low_complexity Low_complexity 1 22 0 3 1654 439 211 154 0 chr4 140165480 140165584 -15464536 + PB1D7 SINE Alu 1 120 0 3 1654 612 263 133 11 chr4 140165615 140165803 -15464317 + ID_B1 SINE B4 1 211 -13 3 1654 679 270 59 0 chr4 140165836 140165988 -15464132 + RSINE1 SINE B4 5 165 0 3 1654 393 102 0 0 chr4 140165993 140166052 -15464068 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1654 24 32 0 0 chr4 140166052 140166083 -15464037 + AT_rich Low_complexity Low_complexity 1 31 0 3 1654 452 176 24 0 chr4 140167487 140167572 -15462548 - PB1D9 SINE Alu -33 87 1 3 1654 229 336 67 9 chr4 140168326 140168431 -15461689 - MER20 DNA MER1_type -107 112 2 3 1654 240 312 20 20 chr4 140168706 140168804 -15461316 - YREP_Mm Unknown Unknown -1492 320 223 3 1654 490 161 54 0 chr4 140168719 140168812 -15461308 + PB1D7 SINE Alu 9 106 -14 3 1654 232 284 99 41 chr4 140168812 140168840 -15461280 + B4 SINE B4 94 221 -71 3 1654 462 269 136 39 chr4 140168828 140168983 -15461137 + B3A SINE B2 43 212 -4 3 1654 234 336 12 73 chr4 140169004 140169168 -15460952 + RSINE1 SINE B4 2 155 -10 3 1654 541 151 9 28 chr4 140169198 140169307 -15460813 + B1_Mus2 SINE Alu 41 147 0 3 1654 664 233 0 104 chr4 140169510 140169569 -15460551 - RSINE1 SINE B4 0 165 120 3 1654 1143 82 0 7 chr4 140169569 140169717 -15460403 - B1_Mus1 SINE Alu 0 148 2 3 1654 664 233 0 104 chr4 140169717 140169839 -15460281 - RSINE1 SINE B4 -46 119 3 3 1654 579 117 0 0 chr4 140169892 140169986 -15460134 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1654 255 296 176 0 chr4 140169992 140170168 -15459952 + L2a LINE L2 2988 3194 -232 3 1654 684 194 0 77 chr4 140170168 140170324 -15459796 - ID_B1 SINE B4 -1 223 80 3 1654 451 211 0 116 chr4 140170967 140171096 -15459024 + MT2B LTR ERVL 144 257 -344 3 1654 1028 57 0 14 chr4 140171001 140171143 -15458977 + B1_Mus1 SINE Alu 9 148 0 3 1654 508 201 38 126 chr4 140171005 140171164 -15458956 + B4 SINE B4 97 241 -51 3 1654 185 359 37 55 chr4 140171514 140171623 -15458497 - L4 LINE RTE -1637 392 286 3 1654 304 394 48 27 chr4 140172062 140172250 -15457870 - MIRb SINE MIR -22 246 55 3 1654 252 261 91 0 chr4 140173908 140173996 -15456124 - MIR SINE MIR -120 142 47 3 1654 976 202 17 6 chr4 140174031 140174210 -15455910 + B3 SINE B2 1 181 -35 3 1654 340 288 0 18 chr4 140174286 140174399 -15455721 + GA-rich Low_complexity Low_complexity 2 112 0 3 1654 226 16 127 0 chr4 140174399 140174462 -15455658 + (CAGG)n Simple_repeat Simple_repeat 2 72 0 3 1654 608 130 9 44 chr4 140174465 140174578 -15455542 + B1_Mus2 SINE Alu 39 147 0 3 1654 1050 95 154 0 chr4 140175097 140175266 -15454854 - B2_Mm2 SINE B2 0 195 1 3 1654 1675 22 0 0 chr4 140175315 140175500 -15454620 - B2_Mm1a SINE B2 -7 186 2 3 1654 249 300 24 36 chr4 140175516 140175599 -15454521 - ID4_ SINE ID 0 83 2 3 1654 209 219 0 0 chr4 140175628 140175669 -15454451 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 3 1654 487 254 41 25 chr4 140175737 140175858 -15454262 - B4A SINE B4 -168 124 2 3 1654 351 243 51 83 chr4 140176448 140176605 -15453515 - MIRb SINE MIR -116 152 1 3 1654 382 188 10 10 chr4 140177227 140177324 -15452796 + CT-rich Low_complexity Low_complexity 3 99 0 3 1654 855 280 28 18 chr4 140177346 140177564 -15452556 - ID_B1 SINE B4 -4 220 1 3 1654 1074 101 14 0 chr4 140177699 140177847 -15452273 + B1_Mur4 SINE Alu 1 150 0 3 1654 511 262 0 0 chr4 140178010 140178117 -15452003 - ID_B1 SINE B4 0 224 118 3 1654 234 0 0 0 chr4 140179143 140179169 -15450951 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1654 235 274 130 49 chr4 140179510 140179633 -15450487 + L2c LINE L2 3025 3157 -230 3 1654 591 27 0 0 chr4 140180505 140180578 -15449542 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1654 464 295 54 55 chr4 140182276 140182563 -15447557 + B4 SINE B4 15 292 0 3 1654 490 133 72 12 chr4 140182573 140182824 -15447296 + (CA)n Simple_repeat Simple_repeat 1 266 0 3 1654 315 121 17 17 chr4 140182824 140182883 -15447237 + HAL1-3A_ME LINE L1 1975 2033 -825 3 1654 448 236 39 31 chr4 140183122 140183249 -15446871 + B1F2 SINE Alu 2 129 -20 3 1654 477 50 0 0 chr4 140183249 140183309 -15446811 + (TCTTG)n Simple_repeat Simple_repeat 5 64 0 3 1654 928 94 79 7 chr4 140183318 140183457 -15446663 - B1_Mur4 SINE Alu -1 149 1 3 1654 707 279 18 105 chr4 140183477 140183624 -15446496 + ID_B1 SINE B4 3 138 -86 3 1654 869 129 50 0 chr4 140183624 140183764 -15446356 + B1_Mur3 SINE Alu 3 149 0 3 1654 1221 106 0 0 chr4 140183766 140183946 -15446174 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1654 582 15 0 0 chr4 140183946 140184013 -15446107 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 3 1654 707 279 18 105 chr4 140184013 140184089 -15446031 + ID_B1 SINE B4 139 209 -15 3 1654 226 344 0 0 chr4 140184092 140184153 -15445967 + polypurine Low_complexity Low_complexity 1 61 0 3 1654 242 333 103 0 chr4 140184153 140184279 -15445841 + L2b LINE L2 1802 1940 -1479 3 1654 225 338 162 35 chr4 140184377 140184766 -15445354 + L2b LINE L2 2153 2595 -824 3 1654 207 0 0 0 chr4 140184766 140184789 -15445331 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1654 252 340 159 35 chr4 140184789 140185311 -15444809 + L2b LINE L2 2596 3269 -157 3 1654 753 201 28 7 chr4 140185323 140185468 -15444652 - B3A SINE B2 -50 148 1 3 1654 1076 209 14 5 chr4 140185471 140185687 -15444433 - ID_B1 SINE B4 -1 223 6 3 1654 1974 220 75 32 chr4 140185838 140186332 -15443788 + RMER5 LTR ERV1 19 533 -1 3 1654 551 109 0 19 chr4 140186333 140186436 -15443684 + (GGGA)n Simple_repeat Simple_repeat 3 103 0 3 1654 181 219 24 0 chr4 140186454 140186495 -15443625 - L3 LINE CR1 -4391 98 57 3 1654 187 221 262 78 chr4 140187266 140187369 -15442751 - MIRb SINE MIR -114 154 33 3 1654 253 184 20 0 chr4 140188328 140188377 -15441743 + L2b LINE L2 3326 3375 0 3 1654 438 162 0 36 chr4 140188878 140188961 -15441159 + RSINE1 SINE B4 3 82 -83 3 1654 192 125 0 0 chr4 140189018 140189050 -15441070 + (CATA)n Simple_repeat Simple_repeat 2 33 0 3 1654 600 260 40 7 chr4 140189474 140189625 -15440495 + ID_B1 SINE B4 67 222 -2 3 1654 273 119 0 0 chr4 140189630 140189672 -15440448 + (ATG)n Simple_repeat Simple_repeat 1 42 0 3 1654 304 324 0 100 chr4 140190149 140190269 -15439851 - PB1D9 SINE Alu -10 110 3 3 1654 761 148 17 6 chr4 140191570 140191746 -15438374 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1654 190 320 125 10 chr4 140192770 140192874 -15437246 - MIRm SINE MIR -67 209 94 3 1654 255 264 16 16 chr4 140193734 140193989 -15436131 + (TGGA)n Simple_repeat Simple_repeat 1 255 0 3 1654 836 161 6 0 chr4 140194022 140194184 -15435936 + (TGGA)n Simple_repeat Simple_repeat 1 163 0 3 1654 211 184 20 0 chr4 140194844 140194893 -15435227 + ID4 SINE ID 2 51 -32 3 1654 189 256 169 12 chr4 140195708 140195791 -15434329 + MIR SINE MIR 79 178 -90 3 1654 329 262 35 27 chr4 140196358 140196479 -15433641 + MIRm SINE MIR 53 177 -99 3 1654 536 230 0 9 chr4 140197778 140197892 -15432228 + RSINE1 SINE B4 17 129 -36 3 1654 411 21 0 0 chr4 140197903 140197951 -15432169 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1654 353 270 10 112 chr4 140197976 140198179 -15431941 + MER34A LTR ERV1 7 180 -391 3 1654 1143 257 24 65 chr4 140198213 140198321 -15431799 + MTEa LTR MaLR 1 110 -269 3 1654 204 40 0 0 chr4 140198321 140198346 -15431774 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1654 1143 257 24 65 chr4 140198346 140198607 -15431513 + MTEa LTR MaLR 111 355 -24 3 1654 246 62 0 0 chr4 140198773 140198805 -15431315 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1654 1196 75 0 0 chr4 140198805 140198952 -15431168 - B1_Mus1 SINE Alu 0 148 2 3 1654 839 267 33 5 chr4 140198999 140199210 -15430910 + ID_B1 SINE B4 1 217 -7 3 1654 574 212 9 9 chr4 140199238 140199352 -15430768 + B1F SINE Alu 30 143 -6 3 1654 803 238 25 0 chr4 140199357 140199517 -15430603 + RSINE1 SINE B4 2 165 0 3 1654 654 90 52 29 chr4 140199556 140199728 -15430392 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 3 1654 321 250 26 44 chr4 140199742 140199855 -15430265 + MER34A LTR ERV1 451 561 -10 3 1654 220 310 82 12 chr4 140199959 140200044 -15430076 - MIR SINE MIR -91 171 81 3 1654 216 0 0 0 chr4 140200231 140200255 -15429865 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1654 955 161 78 54 chr4 140200297 140200501 -15429619 + B3 SINE B2 2 210 -6 3 1654 530 276 20 14 chr4 140200520 140200667 -15429453 + B1_Mur1 SINE Alu 1 148 -1 3 1654 679 206 3 6 chr4 140200863 140201189 -15428931 + GA-rich Low_complexity Low_complexity 1 324 0 3 1654 608 203 130 0 chr4 140201959 140202082 -15428038 - B1_Mur1 SINE Alu -9 140 2 3 1654 381 255 291 36 chr4 140202185 140202405 -15427715 - B4 SINE B4 -16 276 1 4 1654 246 284 171 28 chr4 140202713 140202929 -15427191 + MIRc SINE MIR 4 263 -5 4 1654 180 0 0 0 chr4 140203136 140203156 -15426964 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 4 1654 408 194 0 0 chr4 140203164 140203231 -15426889 - ID4 SINE ID -16 67 1 4 1654 262 210 35 0 chr4 140203275 140203333 -15426787 - L2a LINE L2 -9 3417 3307 4 1654 627 60 0 0 chr4 140204292 140204376 -15425744 + (GA)n Simple_repeat Simple_repeat 2 85 0 4 1654 47 82 0 0 chr4 140204596 140204706 -15425414 + GC_rich Low_complexity Low_complexity 1 110 0 4 1654 226 235 22 100 chr4 140205133 140205223 -15424897 - MIRc SINE MIR -119 149 67 4 1654 477 0 0 0 chr4 140205534 140205587 -15424533 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1654 408 258 78 134 chr4 140205631 140205810 -15424310 - B3A SINE B2 -2 196 23 4 1654 425 267 82 51 chr4 140205800 140205958 -15424162 - B4A SINE B4 -48 244 82 4 1654 818 94 0 8 chr4 140205991 140206109 -15424011 - B2_Mm2 SINE B2 -73 122 6 4 1654 306 0 0 0 chr4 140206185 140206219 -15423901 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1654 479 179 0 0 chr4 140206233 140206311 -15423809 + B3A SINE B2 1 78 -120 4 1654 1094 95 0 20 chr4 140206348 140206499 -15423621 + B1_Mus1 SINE Alu 1 148 0 4 1654 945 182 0 0 chr4 140207346 140207494 -15422626 - B1_Mur1 SINE Alu 0 149 2 4 1654 597 170 19 0 chr4 140207495 140207601 -15422519 - B1_Mur1 SINE Alu 0 149 42 4 1654 227 231 54 93 chr4 140207516 140207645 -15422475 - RLTR25B LTR ERVK -508 520 397 4 1654 521 161 0 0 chr4 140207664 140207745 -15422375 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 4 1654 226 277 0 67 chr4 140207856 140207876 -15422244 - MT2B LTR ERVL -325 276 257 4 1654 414 0 0 0 chr4 140207876 140207922 -15422198 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1654 226 277 0 67 chr4 140207922 140207990 -15422130 - MT2B LTR ERVL -345 256 195 4 1654 363 283 0 24 chr4 140207923 140208027 -15422093 - B1F SINE Alu -19 101 1 4 1654 558 211 26 9 chr4 140208188 140208303 -15421817 - PB1D10 SINE Alu 0 117 1 4 1654 376 286 20 20 chr4 140208307 140208407 -15421713 - PB1D10 SINE Alu -1 116 17 4 1654 603 131 452 7 chr4 140208702 140208848 -15421272 + B3 SINE B2 2 212 -4 4 1654 1437 23 94 0 chr4 140208860 140209031 -15421089 + B2_Mm1a SINE B2 2 188 -5 4 1654 510 296 6 74 chr4 140209407 140209582 -15420538 + RSINE1 SINE B4 3 165 0 4 1654 840 191 0 33 chr4 140209601 140209753 -15420367 + B1_Mur1 SINE Alu 2 148 -1 4 1654 226 258 16 0 chr4 140210165 140210227 -15419893 + L1MC4 LINE L1 7271 7333 -709 4 1654 721 278 94 16 chr4 140210374 140210603 -15419517 - ID_B1 SINE B4 -42 250 6 4 1654 812 10 10 0 chr4 140210629 140210726 -15419394 + (TC)n Simple_repeat Simple_repeat 2 99 0 4 1654 245 372 0 0 chr4 140210751 140210829 -15419291 - PB1D7 SINE Alu -42 78 1 4 1654 249 313 20 0 chr4 140210952 140211051 -15419069 + L1MC4 LINE L1 7685 7785 -257 4 1654 500 288 50 25 chr4 140211232 140211392 -15418728 + RSINE1 SINE B4 1 164 -1 4 1654 474 172 0 23 chr4 140211393 140211524 -15418596 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 1654 346 291 58 0 chr4 140211922 140212025 -15418095 + RMER15 LTR ERVL 467 575 0 4 1654 512 222 0 41 chr4 140212062 140212184 -15417936 - PB1D7 SINE Alu -2 118 2 4 1654 214 316 18 0 chr4 140212231 140212288 -15417832 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1654 445 196 26 70 chr4 140212351 140212466 -15417654 - B1F2 SINE Alu 0 149 40 4 1654 357 188 0 184 chr4 140212807 140212905 -15417215 + ID4_ SINE ID 1 80 -3 4 1654 857 225 39 39 chr4 140212832 140213040 -15417080 + ID_B1 SINE B4 13 220 -4 4 1654 201 24 0 89 chr4 140213144 140213189 -15416931 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 4 1654 251 245 124 29 chr4 140214686 140214791 -15415329 - MIRm SINE MIR -122 154 40 4 1654 607 231 44 7 chr4 140215461 140215596 -15414524 + B1F2 SINE Alu 5 144 -5 4 1654 387 256 16 8 chr4 140215922 140216048 -15414072 + (CACCAT)n Simple_repeat Simple_repeat 4 130 0 4 1654 232 325 85 42 chr4 140216055 140216178 -15413942 - MIRb SINE MIR -24 244 110 4 1654 295 346 88 7 chr4 140216207 140216344 -15413776 + L2a LINE L2 3276 3423 -3 4 1654 1093 75 29 0 chr4 140216361 140216535 -15413585 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 4 1654 324 289 42 12 chr4 140216558 140216726 -15413394 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 4 1654 559 253 32 38 chr4 140216734 140216919 -15413201 + B3 SINE B2 10 193 -23 4 1654 1183 57 6 0 chr4 140216934 140217093 -15413027 + B2_Mm1a SINE B2 1 160 -33 4 1654 513 0 0 0 chr4 140217093 140217150 -15412970 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 4 1654 252 0 0 0 chr4 140217684 140217712 -15412408 + (CTCG)n Simple_repeat Simple_repeat 2 29 0 4 1654 645 267 72 6 chr4 140217939 140217990 -15412130 + ID_B1 SINE B4 32 93 -131 4 1654 238 314 15 46 chr4 140217990 140218120 -15412000 + B1_Mm SINE Alu 1 126 -21 4 1654 314 287 63 58 chr4 140218639 140218830 -15411290 - MIR3 SINE MIR -21 187 2 4 1654 248 250 0 37 chr4 140219171 140219225 -15410895 - RSINE1 SINE B4 -111 54 3 4 1654 183 295 167 10 chr4 140219310 140219406 -15410714 + MIRb SINE MIR 27 137 -131 4 1654 632 194 0 0 chr4 140219757 140219865 -15410255 - PB1D7 SINE Alu -7 113 6 4 1654 1024 116 0 33 chr4 140219887 140220039 -15410081 - B1_Mus2 SINE Alu 0 147 1 4 1654 318 344 70 85 chr4 140220476 140220676 -15409444 + MIRc SINE MIR 44 240 -28 4 1654 270 343 18 18 chr4 140221009 140221119 -15409001 + L3 LINE CR1 4303 4412 -77 4 1654 219 36 0 0 chr4 140222055 140222083 -15408037 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1654 295 319 13 16 chr4 140222210 140222331 -15407789 + MIR SINE MIR 42 157 -105 4 1654 371 250 130 9 chr4 140222826 140222941 -15407179 + B1F1 SINE Alu 20 148 -1 4 1654 183 220 0 0 chr4 140223085 140223135 -15406985 + (ATGGTG)n Simple_repeat Simple_repeat 5 54 0 4 1654 734 219 12 12 chr4 140223135 140223306 -15406814 - HAL1-2a_MD LINE L1 -509 2515 2345 4 1654 341 255 26 43 chr4 140223506 140223621 -15406499 + PB1D10 SINE Alu 5 117 0 4 1654 704 208 0 8 chr4 140223650 140223781 -15406339 + ID_B1 SINE B4 87 216 -8 4 1654 217 213 64 0 chr4 140223741 140223788 -15406332 + PB1D7 SINE Alu 70 119 -1 4 1654 287 65 22 0 chr4 140224411 140224457 -15405663 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1654 1272 71 0 21 chr4 140224463 140224650 -15405470 + B2_Mm2 SINE B2 9 191 -4 4 1654 31 44 0 0 chr4 140224650 140224695 -15405425 + AT_rich Low_complexity Low_complexity 1 45 0 4 1654 740 153 256 6 chr4 140224861 140225025 -15405095 - MTD LTR MaLR -14 405 201 4 1654 1068 70 0 0 chr4 140225025 140225167 -15404953 + (TTC)n Simple_repeat Simple_repeat 3 144 0 4 1654 251 122 0 20 chr4 140225167 140225217 -15404903 + (CCCCCT)n Simple_repeat Simple_repeat 6 54 0 4 1654 398 129 11 76 chr4 140225265 140225357 -15404763 - RMER4B LTR ERVK 0 585 500 4 1654 1660 107 114 0 chr4 140225357 140225646 -15404474 - RMER4B LTR ERVK -263 322 1 4 1654 794 191 249 0 chr4 140225652 140225825 -15404295 - B3 SINE B2 0 216 1 4 1654 595 240 129 10 chr4 140225825 140226012 -15404108 - MTD LTR MaLR -208 211 2 4 1654 340 346 15 37 chr4 140226645 140226780 -15403340 - ID_B1 SINE B4 0 224 93 4 1654 246 81 0 0 chr4 140226827 140226864 -15403256 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1654 263 372 47 27 chr4 140227345 140227494 -15402626 + MIRb SINE MIR 45 196 -72 4 1654 297 291 27 101 chr4 140227581 140227604 -15402516 + MT2B2 LTR ERVL 150 221 -363 4 1654 432 176 59 0 chr4 140227604 140227689 -15402431 + PB1D10 SINE Alu 7 96 -21 4 1654 4702 34 34 0 chr4 140227697 140228252 -15401868 + L1Md_F2 LINE L1 6009 6582 0 4 1654 297 291 27 101 chr4 140228252 140228284 -15401836 + MT2B2 LTR ERVL 254 286 -298 4 1654 315 331 8 38 chr4 140228284 140228311 -15401809 + ID_B1 SINE B4 80 136 -88 4 1654 1326 14 0 0 chr4 140228311 140228458 -15401662 + B1_Mm SINE Alu 1 147 0 4 1654 315 331 8 38 chr4 140228458 140228530 -15401590 + ID_B1 SINE B4 137 207 -17 4 1654 270 262 64 64 chr4 140228504 140228562 -15401558 - B1_Mur1 SINE Alu -38 111 53 4 1654 2529 89 3 18 chr4 140228562 140228894 -15401226 - ORR1A2 LTR MaLR 0 327 1 4 1654 270 262 64 64 chr4 140228894 140228945 -15401175 - B1_Mur1 SINE Alu -97 52 2 4 1654 1416 90 21 0 chr4 140228974 140229163 -15400957 + B2_Mm1a SINE B2 1 193 0 4 1654 733 207 124 38 chr4 140229163 140229348 -15400772 - B3 SINE B2 -14 202 1 4 1654 1305 27 0 0 chr4 140230157 140230304 -15399816 + B1_Mm SINE Alu 1 147 0 4 1654 559 320 43 30 chr4 140230717 140231017 -15399103 + MLT1G3 LTR MaLR 190 493 -102 4 1654 1037 221 33 0 chr4 140231086 140231299 -15398821 + ID_B1 SINE B4 1 220 -4 4 1654 829 50 261 0 chr4 140231301 140231420 -15398700 + B1_Mur4 SINE Alu 1 150 0 4 1654 248 70 23 0 chr4 140231426 140231469 -15398651 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1654 971 184 67 34 chr4 140231480 140231688 -15398432 + B3 SINE B2 2 216 0 4 1654 278 301 0 12 chr4 140231690 140231711 -15398409 + B4 SINE B4 66 85 -207 4 1654 416 200 15 264 chr4 140231711 140231801 -15398319 + B1_Mur2 SINE Alu 2 69 -80 4 1654 2014 124 206 3 chr4 140231801 140232150 -15397970 - MTC LTR MaLR -1 420 1 4 1654 416 200 15 264 chr4 140232150 140232256 -15397864 + B1_Mur2 SINE Alu 70 149 0 4 1654 22 70 0 0 chr4 140232340 140232383 -15397737 + AT_rich Low_complexity Low_complexity 1 43 0 4 1654 258 274 0 0 chr4 140232410 140232461 -15397659 - B1_Mur4 SINE Alu -97 53 3 5 1654 629 118 59 0 chr4 140232508 140232610 -15397510 + B1_Mus2 SINE Alu 38 145 -2 5 1654 998 232 19 0 chr4 140232650 140232861 -15397259 - B3 SINE B2 -1 215 1 5 1654 267 189 0 0 chr4 140232865 140232918 -15397202 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1654 738 185 8 0 chr4 140232918 140233048 -15397072 - B1_Mur1 SINE Alu -13 136 6 5 1654 233 261 14 14 chr4 140233101 140233171 -15396949 + ID4 SINE ID 3 72 -11 5 1654 1896 123 88 93 chr4 140233177 140233467 -15396653 + RLTR31A_Mm LTR ERVK 1 323 -261 5 1654 1194 50 0 0 chr4 140233467 140233608 -15396512 + B1_Mm SINE Alu 5 145 -2 5 1654 1272 115 0 32 chr4 140233608 140233623 -15396497 - B2_Mm2 SINE B2 -13 182 173 5 1654 1405 62 39 0 chr4 140233623 140233801 -15396319 + B2_Mm2 SINE B2 3 187 -8 5 1654 1272 115 0 32 chr4 140233801 140233973 -15396147 - B2_Mm2 SINE B2 -23 172 1 5 1654 1896 157 104 107 chr4 140233973 140234163 -15395957 + RLTR31A_Mm LTR ERVK 324 560 -1 5 1654 809 115 8 0 chr4 140234180 140234302 -15395818 + B1_Mur2 SINE Alu 5 127 -22 5 1654 770 81 9 0 chr4 140234322 140234433 -15395687 + (GGGA)n Simple_repeat Simple_repeat 2 113 0 5 1654 334 167 54 27 chr4 140234605 140234679 -15395441 + ID_B1 SINE B4 148 223 -1 5 1654 376 104 30 0 chr4 140234706 140234773 -15395347 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 5 1654 664 182 35 24 chr4 140234809 140234976 -15395144 + ID_B1 SINE B4 52 209 -15 5 1654 253 273 39 39 chr4 140235350 140235453 -15394667 - L2c LINE L2 -191 3196 3094 5 1654 424 192 0 0 chr4 140235534 140235607 -15394513 + PB1D9 SINE Alu 5 77 -43 5 1654 398 261 33 0 chr4 140235646 140235738 -15394382 + PB1D7 SINE Alu 7 101 -19 5 1654 194 136 0 22 chr4 140235965 140236010 -15394110 + (CGGGG)n Simple_repeat Simple_repeat 1 44 0 5 1654 722 139 66 0 chr4 140236040 140236177 -15393943 + B1_Mus1 SINE Alu 3 148 0 5 1654 796 36 36 0 chr4 140236192 140236302 -15393818 + B1_Mus1 SINE Alu 35 148 0 5 1654 1118 70 28 0 chr4 140236336 140236479 -15393641 + B1_Mm SINE Alu 1 147 0 5 1654 1208 68 0 0 chr4 140236492 140236639 -15393481 + B1_Mus2 SINE Alu 1 147 0 5 1654 351 0 0 0 chr4 140236771 140236810 -15393310 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1654 339 198 132 0 chr4 140236810 140236901 -15393219 - ID_B1 SINE B4 -56 168 66 5 1654 1208 188 19 5 chr4 140237396 140237605 -15392515 - B3 SINE B2 0 216 5 5 1654 297 75 0 0 chr4 140237701 140237741 -15392379 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1654 1182 55 0 20 chr4 140237741 140237890 -15392230 - B1_Mus2 SINE Alu 0 147 2 5 1654 906 136 13 26 chr4 140237921 140238072 -15392048 + B1_Mur3 SINE Alu 1 149 0 5 1654 453 36 0 0 chr4 140238074 140238129 -15391991 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1654 1200 41 7 7 chr4 140238379 140238526 -15391594 + B1_Mus1 SINE Alu 2 148 0 5 1654 189 94 0 0 chr4 140238531 140238563 -15391557 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1654 197 159 0 0 chr4 140238657 140238695 -15391425 - MIR SINE MIR -89 119 81 5 1654 253 306 0 40 chr4 140238732 140238807 -15391313 - B4A SINE B4 -2 290 219 5 1654 634 301 94 40 chr4 140238854 140238893 -15391227 - B4A SINE B4 0 292 254 5 1654 312 27 0 0 chr4 140238893 140238930 -15391190 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1654 1120 62 20 27 chr4 140238931 140239079 -15391041 - B1_Mus2 SINE Alu 0 147 1 5 1654 634 301 94 40 chr4 140239079 140239314 -15390806 - B4A SINE B4 -39 253 1 5 1654 1544 68 0 0 chr4 140239329 140239521 -15390599 - B2_Mm1a SINE B2 -1 192 1 5 1654 363 266 201 7 chr4 140239525 140239669 -15390451 - B4A SINE B4 -67 225 54 5 1654 367 295 0 28 chr4 140239847 140239955 -15390165 - PB1D10 SINE Alu -3 114 10 5 1654 354 233 15 108 chr4 140240265 140240395 -15389725 + MER20 DNA MER1_type 3 120 -99 5 1654 587 249 182 0 chr4 140241155 140241336 -15388784 + ID_B1 SINE B4 8 221 -3 5 1654 295 206 110 0 chr4 140241391 140241464 -15388656 - PB1D9 SINE Alu -39 81 1 5 1654 525 291 86 11 chr4 140241470 140241644 -15388476 - ID_B1 SINE B4 -8 216 30 5 1654 315 330 118 20 chr4 140241664 140241868 -15388252 - RMER5 LTR ERV1 -264 270 47 5 1654 297 252 0 0 chr4 140241974 140242093 -15388027 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1654 1292 27 0 0 chr4 140242093 140242240 -15387880 + B1_Mus1 SINE Alu 2 148 0 5 1654 230 299 8 0 chr4 140242309 140242443 -15387677 + (TG)n Simple_repeat Simple_repeat 2 136 0 5 1654 432 264 0 0 chr4 140242460 140242634 -15387486 + (TG)n Simple_repeat Simple_repeat 2 175 0 5 1654 197 185 0 36 chr4 140242677 140242733 -15387387 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 5 1654 305 269 72 63 chr4 140242734 140242845 -15387275 - RSINE1 SINE B4 0 165 54 5 1654 594 214 12 43 chr4 140243171 140243193 -15386927 + ID_B1 SINE B4 69 224 0 5 1654 993 79 0 0 chr4 140243193 140243332 -15386788 + B1_Mus1 SINE Alu 10 148 0 5 1654 962 152 173 5 chr4 140243346 140243531 -15386589 + B3 SINE B2 1 216 0 5 1654 1382 94 5 5 chr4 140243534 140243727 -15386393 + B2_Mm1t SINE B2 1 193 0 5 1654 1350 78 15 35 chr4 140243736 140243935 -15386185 + B2_Mm2 SINE B2 1 195 0 5 1654 411 145 0 0 chr4 140244177 140244260 -15385860 + (GGGGA)n Simple_repeat Simple_repeat 2 84 0 5 1654 216 0 0 0 chr4 140244568 140244592 -15385528 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1654 686 158 102 29 chr4 140244700 140244837 -15385283 + B1_Mur2 SINE Alu 2 148 -1 5 1654 1064 226 19 0 chr4 140245299 140245511 -15384609 - B3 SINE B2 0 216 1 5 1654 232 136 23 0 chr4 140245695 140245739 -15384381 + B3 SINE B2 172 216 0 5 1654 824 202 115 16 chr4 140245814 140246005 -15384115 - B3 SINE B2 -6 210 1 5 1654 237 262 0 16 chr4 140246012 140246074 -15384046 + MER34A1 LTR ERV1 507 567 -20 5 1654 301 276 61 10 chr4 140246085 140246184 -15383936 + PB1D9 SINE Alu 12 115 -5 5 1654 400 275 22 52 chr4 140246195 140246359 -15383761 + ID_B1 SINE B4 23 195 -97 5 1654 586 257 95 37 chr4 140246438 140246628 -15383492 - ID_B1 SINE B4 -4 220 20 5 1654 246 305 124 20 chr4 140246891 140247020 -15383100 + MIRb SINE MIR 68 208 -54 5 1655 1535 145 36 56 chr4 140247085 140247520 -15382600 + RMER17C LTR ERVK 19 439 -519 5 1655 714 195 31 79 chr4 140247520 140247631 -15382489 - RMER17C LTR ERVK -193 217 103 5 1655 1216 150 10 20 chr4 140247631 140247828 -15382292 + B2_Mm2 SINE B2 1 195 0 5 1655 714 195 31 79 chr4 140247828 140247944 -15382176 - RMER17C LTR ERVK -308 102 2 5 1655 428 188 157 10 chr4 140248080 140248182 -15381938 - PB1D9 SINE Alu -2 118 2 5 1655 674 238 72 13 chr4 140248369 140248522 -15381598 - RSINE1 SINE B4 0 165 4 5 1655 31 44 0 0 chr4 140248524 140248569 -15381551 + AT_rich Low_complexity Low_complexity 1 45 0 5 1655 948 152 21 0 chr4 140248569 140248714 -15381406 + B1_Mur4 SINE Alu 3 150 0 5 1655 311 283 51 102 chr4 140248762 140248836 -15381284 - MT2A LTR ERVL -92 441 292 5 1655 719 62 0 0 chr4 140248836 140248932 -15381188 + B1_Mm SINE Alu 1 96 -51 5 1655 567 235 8 0 chr4 140248930 140249049 -15381071 - MT2A LTR ERVL -144 389 270 5 1655 576 286 106 51 chr4 140249054 140249233 -15380887 - MTE2b LTR MaLR -74 305 113 5 1655 207 0 0 0 chr4 140249233 140249256 -15380864 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1655 576 286 106 51 chr4 140249256 140249312 -15380808 - MTE2b LTR MaLR -267 112 57 5 1655 288 0 0 0 chr4 140249688 140249720 -15380400 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1655 1118 50 50 0 chr4 140249847 140249988 -15380132 - B1_Mus1 SINE Alu 0 148 1 5 1655 244 203 51 0 chr4 140249995 140250054 -15380066 - PB1D9 SINE Alu -58 62 1 5 1655 1091 60 26 0 chr4 140250202 140250353 -15379767 + B2_Mm1t SINE B2 35 189 -4 5 1655 541 155 41 0 chr4 140250358 140250455 -15379665 - B1_Mur4 SINE Alu -12 138 38 5 1655 388 180 2 68 chr4 140250482 140250580 -15379540 - B1_Mus1 SINE Alu -42 107 13 5 1655 664 257 26 112 chr4 140250592 140250824 -15379296 - B3 SINE B2 0 216 5 5 1655 356 300 94 45 chr4 140251075 140251268 -15378852 - MIR SINE MIR -73 195 2 5 1655 546 16 0 0 chr4 140251880 140251943 -15378177 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1655 299 160 0 0 chr4 140252107 140252157 -15377963 - MER5A1 DNA MER1_type -101 65 16 5 1655 1185 170 10 24 chr4 140252480 140252685 -15377435 - B3 SINE B2 -10 206 5 5 1655 395 177 38 2 chr4 140252878 140252973 -15377147 + B1_Mur3 SINE Alu 45 148 -1 5 1655 1155 87 0 0 chr4 140252978 140253139 -15376981 + (GGAAA)n Simple_repeat Simple_repeat 3 163 0 5 1655 1265 48 0 0 chr4 140253139 140253285 -15376835 + B1_Mus2 SINE Alu 2 147 0 5 1655 726 181 137 6 chr4 140253657 140253803 -15376317 + B2_Mm2 SINE B2 2 169 -26 5 1655 513 0 0 0 chr4 140253803 140253860 -15376260 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 5 1655 726 181 137 6 chr4 140253860 140253874 -15376246 + B2_Mm2 SINE B2 170 183 -12 5 1655 508 276 8 16 chr4 140253894 140254023 -15376097 - B3A SINE B2 -70 128 1 5 1655 432 292 34 14 chr4 140254030 140254176 -15375944 - B1F SINE Alu 0 149 1 5 1655 901 62 147 0 chr4 140254357 140254486 -15375634 - B1_Mus1 SINE Alu 0 148 1 5 1655 329 279 37 28 chr4 140254591 140254698 -15375422 + PB1D7 SINE Alu 2 109 -11 5 1655 452 301 60 27 chr4 140254911 140255061 -15375059 + ID_B1 SINE B4 1 155 -69 5 1655 427 198 20 59 chr4 140256260 140256362 -15373758 + ID_B1 SINE B4 107 204 -20 5 1655 333 261 40 73 chr4 140256362 140256383 -15373737 + B1_Mur4 SINE Alu 27 145 -5 6 1655 32 43 0 0 chr4 140257334 140257380 -15372740 + GC_rich Low_complexity Low_complexity 1 46 0 6 1655 227 426 0 9 chr4 140257618 140257727 -15372393 + LTR78 LTR ERV1 852 959 -345 6 1655 207 0 0 0 chr4 140257796 140257819 -15372301 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1655 26 50 0 0 chr4 140257824 140257864 -15372256 + GC_rich Low_complexity Low_complexity 1 40 0 6 1655 26 74 0 0 chr4 140257975 140258029 -15372091 + GC_rich Low_complexity Low_complexity 1 54 0 6 1655 34 24 0 0 chr4 140258123 140258164 -15371956 + GC_rich Low_complexity Low_complexity 1 41 0 6 1655 204 125 0 0 chr4 140258189 140258221 -15371899 + (CAG)n Simple_repeat Simple_repeat 3 34 0 6 1655 242 292 0 0 chr4 140258509 140258574 -15371546 + C-rich Low_complexity Low_complexity 1 65 0 6 1655 215 219 50 42 chr4 140258638 140258757 -15371363 + (CGCGG)n Simple_repeat Simple_repeat 5 124 0 6 1655 1153 202 172 29 chr4 140259425 140259808 -15370312 - RMER10A LTR ERVL 0 442 5 6 1655 202 200 0 0 chr4 140261095 140261135 -15368985 + CT-rich Low_complexity Low_complexity 4 43 0 6 1655 689 211 45 84 chr4 140262393 140262595 -15367525 - B3A SINE B2 -4 194 1 6 1655 313 207 0 107 chr4 140262621 140262724 -15367396 + PB1D10 SINE Alu 26 117 0 6 1655 281 288 0 35 chr4 140262720 140262824 -15367296 - B4A SINE B4 -181 111 16 6 1655 338 271 30 40 chr4 140263035 140263135 -15366985 + B1F1 SINE Alu 4 102 -47 6 1655 259 268 106 67 chr4 140263679 140263783 -15366337 + PB1D10 SINE Alu 1 108 -12 6 1655 217 280 85 11 chr4 140266486 140266580 -15363540 - RSINE1 SINE B4 -64 101 1 6 1655 233 29 0 29 chr4 140267050 140267085 -15363035 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 6 1655 451 234 70 0 chr4 140270492 140270620 -15359500 + B1F2 SINE Alu 13 149 0 6 1655 492 193 60 100 chr4 140270808 140270864 -15359256 - B1_Mur1 SINE Alu 0 149 108 6 1655 1714 31 0 0 chr4 140270864 140271057 -15359063 - B2_Mm1a SINE B2 0 193 1 6 1655 492 193 60 100 chr4 140271057 140271150 -15358970 - B1_Mur1 SINE Alu -42 107 6 6 1655 378 276 47 9 chr4 140271164 140271270 -15358850 - ID_B1 SINE B4 -3 221 112 6 1655 487 189 75 19 chr4 140272389 140272518 -15357602 - B1_Mur2 SINE Alu -1 148 19 6 1655 1747 16 0 0 chr4 140273290 140273482 -15356638 - B2_Mm1a SINE B2 0 193 2 6 1655 1242 34 0 7 chr4 140274924 140275072 -15355048 - B1_Mus2 SINE Alu 0 147 1 6 1655 574 88 176 0 chr4 140275091 140275193 -15354927 - B1_Mm SINE Alu -7 140 21 6 1655 783 197 13 20 chr4 140275391 140275541 -15354579 - B1_Mur1 SINE Alu 0 149 1 6 1655 365 174 0 124 chr4 140275559 140275580 -15354540 + MT2B LTR ERVL 149 156 -445 6 1655 656 78 14 3 chr4 140275580 140275689 -15354431 + B1_Mus1 SINE Alu 1 117 0 6 1655 241 171 3 109 chr4 140275713 140275794 -15354326 + B1F SINE Alu 91 143 -6 6 1655 1063 207 40 0 chr4 140275807 140276005 -15354115 + B3 SINE B2 1 206 -10 6 1655 415 115 18 23 chr4 140276374 140276478 -15353642 - B1_Mus2 SINE Alu -24 123 21 6 1655 335 197 45 0 chr4 140279450 140279516 -15350604 - RLTR12A LTR ERVK -117 451 383 6 1655 500 161 22 126 chr4 140279594 140279729 -15350391 - RLTR12A LTR ERVK -437 131 11 6 1655 210 191 0 0 chr4 140279745 140279787 -15350333 - B1_Mus2 SINE Alu -101 46 5 6 1655 896 179 131 20 chr4 140280305 140280504 -15349616 - URR1B DNA MER1_type -4 221 1 6 1655 1935 216 124 22 chr4 140280879 140281386 -15348734 - RLTR20B1 LTR ERVK -4 559 1 6 1655 246 232 0 0 chr4 140281430 140281486 -15348634 - B3 SINE B2 -160 56 1 6 1655 255 284 95 0 chr4 140281743 140281817 -15348303 - RSINE1 SINE B4 -82 83 3 6 1655 341 171 0 79 chr4 140281817 140281877 -15348243 + ID_B1 SINE B4 170 223 -1 6 1655 802 103 26 0 chr4 140284057 140284174 -15345946 + PB1D9 SINE Alu 1 120 0 6 1655 258 32 0 0 chr4 140284176 140284207 -15345913 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1655 1197 149 27 0 chr4 140284217 140284405 -15345715 + B2_Mm2 SINE B2 2 194 -1 6 1655 661 200 45 45 chr4 140284432 140284610 -15345510 + B2_Mm2 SINE B2 2 179 -16 6 1655 841 154 30 41 chr4 140286476 140286645 -15343475 + URR1B DNA MER1_type 59 225 0 6 1655 752 144 96 0 chr4 140286664 140286789 -15343331 + B1_Mus1 SINE Alu 2 138 -10 6 1655 323 315 74 0 chr4 140287324 140287432 -15342688 + RSINE1 SINE B4 3 118 -47 6 1655 777 210 0 24 chr4 140287646 140287812 -15342308 + B2_Mm2 SINE B2 2 163 -32 6 1655 219 69 0 0 chr4 140289001 140289030 -15341090 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 6 1655 1040 58 7 0 chr4 140289068 140289207 -15340913 + B1_Mm SINE Alu 8 147 0 6 1655 382 245 143 29 chr4 140289281 140289386 -15340734 - ID_B1 SINE B4 -106 118 2 6 1655 198 0 0 0 chr4 140289468 140289490 -15340630 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1655 1247 48 0 0 chr4 140289490 140289637 -15340483 - B1_Mm SINE Alu 0 147 1 6 1655 183 114 0 0 chr4 140290535 140290570 -15339550 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1655 1090 75 14 14 chr4 140290573 140290721 -15339399 - B1_Mus1 SINE Alu 0 148 1 6 1655 236 210 96 58 chr4 140290722 140290814 -15339306 - B1_Mur2 SINE Alu 0 120 27 6 1655 1058 54 87 0 chr4 140290832 140290981 -15339139 - B2_Mm2 SINE B2 -31 164 3 6 1655 380 200 92 7 chr4 140291794 140291935 -15338185 + RMER17C LTR ERVK 123 275 -135 6 1655 364 323 60 24 chr4 140292171 140292339 -15337781 - B4A SINE B4 -91 201 28 6 1655 1010 70 27 27 chr4 140292461 140292608 -15337512 - B1_Mus1 SINE Alu 0 148 2 6 1655 568 198 116 63 chr4 140292675 140292864 -15337256 + B3 SINE B2 3 201 -15 6 1655 529 199 285 35 chr4 140293596 140293768 -15336352 + ID_B1 SINE B4 1 215 -9 6 1655 521 331 28 17 chr4 140293785 140293963 -15336157 + B3A SINE B2 8 187 -11 6 1655 814 139 35 28 chr4 140294003 140294144 -15335976 - B1_Mur3 SINE Alu -7 142 1 6 1655 1198 91 27 38 chr4 140294168 140294351 -15335769 - B2_Mm2 SINE B2 -14 181 1 6 1655 1240 41 7 0 chr4 140294372 140294518 -15335602 - B1_Mus2 SINE Alu 0 147 1 6 1655 1296 108 11 0 chr4 140294548 140294733 -15335387 + B2_Mm1t SINE B2 1 187 -6 6 1655 314 234 50 83 chr4 140295407 140295528 -15334592 - PB1D10 SINE Alu 0 117 1 6 1655 304 294 32 48 chr4 140295533 140295658 -15334462 - B1_Mur1 SINE Alu -5 144 22 6 1655 808 93 23 15 chr4 140296188 140296319 -15333801 - B2_Mm2 SINE B2 -63 132 1 6 1655 255 237 130 13 chr4 140296328 140296405 -15333715 + RMER30 DNA MER1_type 108 193 -9 6 1655 348 263 28 83 chr4 140296500 140296645 -15333475 + B3 SINE B2 1 137 -79 6 1655 243 0 0 0 chr4 140296646 140296673 -15333447 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1655 791 152 7 14 chr4 140297130 140297270 -15332850 + B1_Mur4 SINE Alu 12 150 0 6 1655 194 91 0 29 chr4 140298641 140298675 -15331445 + (GGA)n Simple_repeat Simple_repeat 1 33 0 6 1655 843 90 174 0 chr4 140298882 140299026 -15331094 + URR1A DNA MER1_type 58 226 0 6 1655 180 0 0 0 chr4 140299333 140299353 -15330767 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1655 489 254 26 26 chr4 140299508 140299621 -15330499 + PB1D7 SINE Alu 1 113 -7 6 1655 393 294 0 0 chr4 140299843 140299952 -15330168 + PB1D10 SINE Alu 1 109 -8 6 1655 427 300 17 0 chr4 140300071 140300191 -15329929 + B1F1 SINE Alu 14 135 -14 6 1655 414 0 0 0 chr4 140300191 140300237 -15329883 + (CAAT)n Simple_repeat Simple_repeat 4 49 0 6 1655 514 252 109 8 chr4 140300500 140300628 -15329492 + RSINE1 SINE B4 1 141 -24 6 1655 576 0 0 0 chr4 140300628 140300692 -15329428 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1655 289 228 18 0 chr4 140300694 140300751 -15329369 + B1_Mur3 SINE Alu 1 58 -91 6 1655 480 284 0 72 chr4 140300750 140300917 -15329203 - RSINE1 SINE B4 -7 158 4 6 1655 628 233 16 0 chr4 140300971 140301100 -15329020 - B1_Mur1 SINE Alu -18 131 1 6 1655 270 0 0 0 chr4 140301129 140301159 -15328961 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1655 796 48 0 0 chr4 140301159 140301262 -15328858 - B1_Mus2 SINE Alu -9 138 36 6 1655 981 87 73 0 chr4 140301261 140301411 -15328709 - B2_Mm1t SINE B2 -31 162 2 6 1655 1294 69 80 0 chr4 140301411 140301586 -15328534 - B2_Mm1a SINE B2 -2 191 3 6 1655 35 0 0 0 chr4 140301594 140301629 -15328491 + AT_rich Low_complexity Low_complexity 1 35 0 6 1655 189 0 0 0 chr4 140301963 140301984 -15328136 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 6 1655 542 217 26 26 chr4 140302350 140302616 -15327504 + CT-rich Low_complexity Low_complexity 1 266 0 6 1655 320 292 7 103 chr4 140302725 140302870 -15327250 - B4A SINE B4 -150 142 12 6 1655 579 274 37 16 chr4 140302891 140303080 -15327040 - B3A SINE B2 -4 194 2 6 1655 244 269 39 0 chr4 140303089 140303109 -15327011 - PB1D10 SINE Alu -6 111 31 6 1655 269 259 0 0 chr4 140303109 140303167 -15326953 - ID_B1 SINE B4 -55 169 112 6 1655 259 238 0 101 chr4 140303703 140303792 -15326328 + MIRb SINE MIR 48 127 -141 6 1655 23 0 0 0 chr4 140305020 140305043 -15325077 + AT_rich Low_complexity Low_complexity 1 23 0 6 1655 745 168 170 23 chr4 140305043 140305214 -15324906 - B3A SINE B2 -2 196 1 6 1655 387 169 0 0 chr4 140305214 140305285 -15324835 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1655 712 216 59 136 chr4 140305285 140305505 -15324615 - B3 SINE B2 -13 203 1 7 1655 867 228 72 5 chr4 140305509 140305716 -15324404 - ID_B1 SINE B4 -3 221 1 7 1655 212 329 0 26 chr4 140305755 140305833 -15324287 + ID2 SINE ID 1 76 -7 7 1655 209 266 16 0 chr4 140306011 140306075 -15324045 + CT-rich Low_complexity Low_complexity 3 67 0 7 1655 184 260 60 0 chr4 140306132 140306182 -15323938 + MIRm SINE MIR 213 265 -11 7 1655 1115 113 65 56 chr4 140306879 140307095 -15323025 + URR1B DNA MER1_type 8 225 0 7 1655 258 254 0 17 chr4 140307620 140307680 -15322440 + CT-rich Low_complexity Low_complexity 3 61 0 7 1655 303 305 145 0 chr4 140307680 140307811 -15322309 - HAL1-3A_ME LINE L1 -423 2435 2286 7 1655 189 107 0 0 chr4 140307823 140307851 -15322269 + (TCC)n Simple_repeat Simple_repeat 3 30 0 7 1655 207 25 24 48 chr4 140307953 140307995 -15322125 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1655 1067 57 7 54 chr4 140308001 140308150 -15321970 - B1_Mus1 SINE Alu -5 143 2 7 1655 210 286 0 0 chr4 140308212 140308268 -15321852 + L2c LINE L2 3312 3367 -20 7 1655 191 298 0 0 chr4 140308236 140308283 -15321837 + MIRm SINE MIR 227 273 -3 7 1655 1225 61 0 0 chr4 140308769 140308916 -15321204 + B1_Mus1 SINE Alu 2 148 0 7 1655 273 298 42 21 chr4 140309246 140309342 -15320778 - MLT1D LTR MaLR 0 505 408 7 1655 879 83 0 0 chr4 140310053 140310173 -15319947 + B2_Mm2 SINE B2 1 120 -75 7 1655 1025 219 137 102 chr4 140310391 140310547 -15319573 + MTD LTR MaLR 5 132 -287 7 1655 1172 74 0 0 chr4 140310547 140310695 -15319425 + B1_Mus1 SINE Alu 1 148 0 7 1655 1025 219 137 102 chr4 140310695 140310939 -15319181 + MTD LTR MaLR 133 419 0 7 1655 263 260 72 86 chr4 140310963 140311102 -15319018 - L2b LINE L2 -219 3156 3020 7 1655 275 289 88 32 chr4 140311679 140311804 -15318316 + MIRc SINE MIR 112 243 -25 7 1655 264 219 31 0 chr4 140314749 140314813 -15315307 + L2a LINE L2 2985 3050 -376 7 1655 323 228 14 29 chr4 140315069 140315209 -15314911 + GA-rich Low_complexity Low_complexity 1 138 0 7 1655 1219 108 53 11 chr4 140315220 140315387 -15314733 + B2_Mm2 SINE B2 1 172 -23 7 1655 1173 62 7 0 chr4 140315387 140315532 -15314588 + B1_Mus2 SINE Alu 1 146 -1 7 1655 1219 108 53 11 chr4 140315532 140315551 -15314569 + B2_Mm2 SINE B2 173 195 0 7 1655 237 178 0 52 chr4 140315564 140315641 -15314479 + GA-rich Low_complexity Low_complexity 1 73 0 7 1655 246 145 26 26 chr4 140316222 140316300 -15313820 + (CCCCAG)n Simple_repeat Simple_repeat 4 81 0 7 1655 545 278 11 85 chr4 140316314 140316491 -15313629 - RSINE1 SINE B4 0 165 2 7 1655 212 232 17 0 chr4 140316728 140316792 -15313328 + MIR SINE MIR 81 145 -117 7 1655 292 324 28 50 chr4 140317083 140317272 -15312848 + MIR SINE MIR 35 230 -46 7 1655 280 295 67 0 chr4 140317824 140317929 -15312191 - PB1D10 SINE Alu -3 114 3 7 1655 448 255 120 7 chr4 140317929 140317999 -15312121 - ID SINE ID -137 87 1 7 1655 24 0 0 0 chr4 140318007 140318031 -15312089 + AT_rich Low_complexity Low_complexity 1 24 0 7 1655 976 62 85 0 chr4 140318084 140318213 -15311907 + B1_Mus1 SINE Alu 1 140 -8 7 1655 1043 78 42 21 chr4 140318489 140318633 -15311487 - B1_Mus2 SINE Alu 0 147 1 7 1655 277 266 132 9 chr4 140319607 140319721 -15310399 + MIRb SINE MIR 126 253 -15 7 1655 1235 53 6 0 chr4 140319871 140320040 -15310080 + B2_Mm1t SINE B2 1 170 -23 7 1655 690 156 15 52 chr4 140320172 140320307 -15309813 - B3 SINE B2 -86 130 1 7 1655 756 231 54 21 chr4 140320339 140320525 -15309595 - B3A SINE B2 -3 195 4 7 1655 505 200 15 8 chr4 140320660 140320791 -15309329 + (TATG)n Simple_repeat Simple_repeat 3 134 0 7 1655 267 337 50 0 chr4 140320927 140321028 -15309092 - B1F2 SINE Alu -43 106 1 7 1655 562 290 7 0 chr4 140321028 140321085 -15309035 - ID SINE ID -143 81 24 7 1655 401 0 0 20 chr4 140321289 140321339 -15308781 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 7 1655 550 179 9 19 chr4 140321342 140321450 -15308670 - PB1D9 SINE Alu 0 120 14 7 1655 2500 136 44 22 chr4 140321753 140322160 -15307960 + MTC LTR MaLR 3 418 -3 7 1655 442 262 19 0 chr4 140323379 140323486 -15306634 + PB1D10 SINE Alu 1 109 -8 7 1655 214 308 0 0 chr4 140323491 140323543 -15306577 + polypurine Low_complexity Low_complexity 4 55 0 7 1655 1120 100 0 22 chr4 140323732 140323916 -15306204 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1655 1185 63 0 0 chr4 140323920 140324062 -15306058 - B1_Mus1 SINE Alu -5 143 2 7 1655 582 243 154 0 chr4 140324712 140324955 -15305165 + MTEa LTR MaLR 16 368 -11 7 1655 220 238 37 12 chr4 140325137 140325218 -15304902 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 7 1655 297 0 0 0 chr4 140325848 140325881 -15304239 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1655 780 139 45 37 chr4 140325881 140326015 -15304105 - B1_Mur4 SINE Alu -13 137 3 7 1655 630 122 0 122 chr4 140326102 140326233 -15303887 + B1_Mus1 SINE Alu 2 116 -32 7 1655 591 45 82 8 chr4 140326918 140327052 -15303068 + (TA)n Simple_repeat Simple_repeat 2 145 0 7 1655 259 262 38 0 chr4 140327154 140327234 -15302886 + MER5A DNA MER1_type 105 187 -2 7 1655 574 189 43 92 chr4 140327532 140327695 -15302425 + B4 SINE B4 69 223 -69 7 1655 1111 29 0 0 chr4 140327558 140327696 -15302424 + B1_Mus1 SINE Alu 10 147 -1 7 1655 195 125 0 0 chr4 140327696 140327736 -15302384 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1655 266 236 112 0 chr4 140328505 140328594 -15301526 + B4 SINE B4 50 148 -144 7 1655 561 226 65 0 chr4 140328814 140328938 -15301182 + RSINE1 SINE B4 1 132 -33 7 1655 276 210 32 0 chr4 140328931 140328993 -15301127 + B4 SINE B4 224 287 -5 7 1655 206 322 0 0 chr4 140329399 140329458 -15300662 + L2b LINE L2 3310 3368 -7 7 1655 269 278 57 65 chr4 140330538 140330661 -15299459 - MIRc SINE MIR -35 233 112 7 1655 216 212 7 13 chr4 140330778 140330847 -15299273 - MIR SINE MIR -86 182 108 7 1655 292 261 20 98 chr4 140331385 140331487 -15298633 - RSINE1 SINE B4 -48 117 24 7 1655 1256 41 0 7 chr4 140331520 140331668 -15298452 - B1_Mus1 SINE Alu 0 148 2 7 1655 505 226 47 5 chr4 140331668 140331819 -15298301 - B4 SINE B4 -67 225 73 7 1655 285 320 100 0 chr4 140331872 140331972 -15298148 - B4A SINE B4 -22 270 161 7 1655 289 238 47 47 chr4 140331916 140332022 -15298098 - B1_Mur4 SINE Alu -1 149 44 7 1655 501 214 0 0 chr4 140332005 140332103 -15298017 - B4A SINE B4 -190 102 5 7 1655 293 162 0 14 chr4 140332191 140332260 -15297860 + (TTA)n Simple_repeat Simple_repeat 2 69 0 7 1655 595 254 14 21 chr4 140332260 140332405 -15297715 - RSINE1 SINE B4 -19 146 3 7 1655 315 0 0 0 chr4 140333266 140333301 -15296819 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 7 1655 248 0 31 0 chr4 140333476 140333508 -15296612 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1655 944 219 26 5 chr4 140333619 140333812 -15296308 + B3A SINE B2 2 198 0 7 1655 361 231 48 144 chr4 140334258 140334320 -15295800 + MT2B LTR ERVL 110 153 -448 7 1655 755 134 0 2 chr4 140334320 140334449 -15295671 + B1_Mur1 SINE Alu 2 127 -23 7 1655 815 314 53 7 chr4 140334448 140334733 -15295387 - RMER5 LTR ERV1 -156 378 81 7 1655 2101 155 51 24 chr4 140334813 140335223 -15294897 + MTC LTR MaLR 1 421 0 7 1655 518 157 0 0 chr4 140335223 140335305 -15294815 - MTC LTR MaLR -160 261 180 7 1655 818 129 45 8 chr4 140335300 140335433 -15294687 - B3A SINE B2 -58 140 3 7 1655 291 114 0 0 chr4 140335437 140335481 -15294639 + (GGA)n Simple_repeat Simple_repeat 3 46 0 7 1655 351 80 26 39 chr4 140335519 140335597 -15294523 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 7 1655 674 105 9 0 chr4 140335626 140335731 -15294389 + (GA)n Simple_repeat Simple_repeat 1 106 0 7 1655 228 360 119 17 chr4 140336329 140336739 -15293381 - L1ME3B LINE L1 -291 5949 5498 7 1655 499 216 79 26 chr4 140336812 140336964 -15293156 - RSINE1 SINE B4 -4 161 2 7 1655 508 227 152 0 chr4 140337048 140337180 -15292940 + ID_B1 SINE B4 73 224 0 7 1655 937 204 41 68 chr4 140338104 140338325 -15291795 - B3 SINE B2 0 216 2 7 1655 826 179 14 0 chr4 140338362 140338502 -15291618 - B1_Mur1 SINE Alu -3 146 5 7 1655 319 316 88 25 chr4 140338571 140338730 -15291390 - MIRc SINE MIR -35 233 65 7 1655 182 160 0 20 chr4 140339048 140339099 -15291021 + T-rich Low_complexity Low_complexity 2 51 0 7 1655 232 383 0 12 chr4 140339174 140339256 -15290864 - B4A SINE B4 -2 290 210 7 1655 308 299 28 50 chr4 140339598 140339739 -15290381 - B4A SINE B4 -151 141 4 7 1655 609 259 121 5 chr4 140340002 140340200 -15289920 - ID_B1 SINE B4 0 224 4 7 1655 531 0 0 0 chr4 140340204 140340263 -15289857 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 7 1655 979 82 112 6 chr4 140340422 140340582 -15289538 - RMER10B LTR ERVL -219 179 3 7 1655 348 24 0 0 chr4 140340582 140340623 -15289497 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1655 517 310 19 25 chr4 140340624 140340786 -15289334 - B3 SINE B2 -54 162 2 7 1655 198 103 0 0 chr4 140341002 140341031 -15289089 + (CCCCAG)n Simple_repeat Simple_repeat 4 32 0 7 1655 236 299 46 0 chr4 140342789 140342876 -15287244 + MLT1M LTR MaLR 96 186 -486 7 1655 1911 179 44 6 chr4 140342962 140343322 -15286798 + ORR1D1 LTR MaLR 1 374 0 7 1655 1598 220 109 41 chr4 140344233 140344726 -15285394 + RLTR11A2 LTR ERVK 1 527 0 7 1655 254 259 61 12 chr4 140345072 140345154 -15284966 - B3 SINE B2 -54 162 77 7 1655 230 297 68 0 chr4 140346330 140346404 -15283716 - MIRb SINE MIR -91 177 99 8 1655 374 264 136 36 chr4 140346411 140346426 -15283694 + CYRA11_Mm Unknown Y-chromosome 159 220 -397 8 1655 791 120 6 96 chr4 140346426 140346592 -15283528 - URR1A DNA MER1_type -2 224 74 8 1655 374 264 136 36 chr4 140346592 140346631 -15283489 + CYRA11_Mm Unknown Y-chromosome 221 400 -217 8 1655 253 311 95 95 chr4 140346631 140346841 -15283279 - LTR48 LTR ERV1 -570 217 8 8 1655 1243 48 0 0 chr4 140347611 140347758 -15282362 - B1_Mus2 SINE Alu 0 147 1 8 1655 273 284 0 0 chr4 140348264 140348366 -15281754 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1655 243 250 0 0 chr4 140348426 140348494 -15281626 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1655 189 311 132 11 chr4 140348706 140348797 -15281323 + MIR3 SINE MIR 100 201 -7 8 1655 193 271 17 0 chr4 140349395 140349454 -15280666 - MIR SINE MIR -68 140 81 8 1655 290 336 62 15 chr4 140349499 140349629 -15280491 + MER53 DNA hAT 15 150 -43 8 1655 265 377 79 14 chr4 140350261 140350476 -15279644 - MIR SINE MIR -20 242 14 8 1655 419 317 82 5 chr4 140351128 140351312 -15278808 - MER20 DNA MER1_type -5 214 17 8 1655 180 0 0 0 chr4 140351333 140351353 -15278767 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1655 396 0 0 0 chr4 140351355 140351399 -15278721 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1655 931 232 39 10 chr4 140351919 140352124 -15277996 + ID_B1 SINE B4 2 212 -12 8 1655 413 264 9 45 chr4 140352669 140352780 -15277340 + B3A SINE B2 87 193 -5 8 1655 3485 110 9 11 chr4 140352818 140353343 -15276777 + RLTR28 LTR ERVL 1 524 0 8 1655 589 171 126 0 chr4 140353366 140353477 -15276643 + B1_Mus1 SINE Alu 10 134 -14 8 1655 959 125 0 29 chr4 140353639 140353779 -15276341 + B1_Mur3 SINE Alu 1 136 -13 8 1655 348 261 79 11 chr4 140353784 140353873 -15276247 + B4 SINE B4 198 292 0 8 1655 186 229 0 0 chr4 140354557 140354592 -15275528 + L2b LINE L2 3325 3359 -16 8 1655 296 296 41 0 chr4 140355418 140355516 -15274604 + MER58A DNA MER1_type 16 117 -107 8 1655 979 144 0 7 chr4 140355577 140355724 -15274396 - B1_Mus1 SINE Alu 0 148 3 8 1655 243 0 0 0 chr4 140355731 140355758 -15274362 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 1655 327 25 0 0 chr4 140356179 140356219 -15273901 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1655 318 87 0 0 chr4 140356591 140356637 -15273483 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 8 1655 329 148 0 0 chr4 140356910 140356971 -15273149 - B1F1 SINE Alu 0 149 89 8 1655 886 223 33 9 chr4 140356976 140357189 -15272931 - B4A SINE B4 -73 219 2 8 1655 444 149 0 0 chr4 140357272 140357366 -15272754 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1655 424 302 80 43 chr4 140357910 140358097 -15272023 + MIR SINE MIR 27 220 -42 8 1655 217 309 115 31 chr4 140358512 140358642 -15271478 + MIR SINE MIR 43 183 -93 8 1655 189 158 53 0 chr4 140359073 140359111 -15271009 - MIR3 SINE MIR -54 154 115 8 1655 222 279 189 49 chr4 140359177 140359320 -15270800 - MIR SINE MIR -78 184 22 8 1655 207 229 0 59 chr4 140359613 140359664 -15270456 + L2c LINE L2 3123 3170 -217 8 1655 603 0 0 0 chr4 140359789 140359856 -15270264 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1655 349 246 112 92 chr4 140359883 140359894 -15270226 + B4 SINE B4 79 141 -151 8 1655 675 150 94 8 chr4 140359894 140360022 -15270098 + B1_Mur2 SINE Alu 3 141 -8 8 1655 349 246 112 92 chr4 140360022 140360035 -15270085 + B4 SINE B4 142 233 -59 8 1655 1189 42 4 17 chr4 140360036 140360278 -15269842 + (GGAA)n Simple_repeat Simple_repeat 1 238 0 8 1655 240 301 50 20 chr4 140361023 140361173 -15268947 + MIR3 SINE MIR 2 154 -54 8 1655 503 258 7 64 chr4 140361596 140361737 -15268383 + RSINE1 SINE B4 2 134 -31 8 1655 25 31 0 0 chr4 140361751 140361783 -15268337 + AT_rich Low_complexity Low_complexity 1 32 0 8 1655 207 83 194 0 chr4 140362131 140362167 -15267953 - MIRc SINE MIR -136 132 90 8 1655 186 311 42 53 chr4 140362557 140362652 -15267468 - MIRc SINE MIR -135 133 40 8 1655 678 289 14 54 chr4 140362915 140363138 -15266982 - ID_B1 SINE B4 -6 218 5 8 1655 205 371 19 19 chr4 140363557 140363664 -15266456 + MIR3 SINE MIR 50 156 -52 8 1655 1064 100 6 0 chr4 140363953 140364113 -15266007 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 8 1655 201 240 55 0 chr4 140364324 140364382 -15265738 + MIR SINE MIR 63 121 -147 8 1655 337 358 52 13 chr4 140365426 140365579 -15264541 + MER20 DNA MER1_type 6 164 -55 8 1655 285 311 103 30 chr4 140365815 140366036 -15264084 + MIR SINE MIR 8 241 -21 8 1655 189 0 0 0 chr4 140366826 140366847 -15263273 + (AGGGGG)n Simple_repeat Simple_repeat 1 21 0 8 1655 416 172 0 11 chr4 140367035 140367123 -15262997 + C-rich Low_complexity Low_complexity 1 87 0 8 1655 279 0 0 0 chr4 140367152 140367183 -15262937 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1655 679 292 70 0 chr4 140367195 140367366 -15262754 - ID_B1 SINE B4 -41 183 1 8 1655 298 222 161 0 chr4 140367471 140367552 -15262568 - RSINE1 SINE B4 -69 96 3 8 1655 261 0 0 0 chr4 140367642 140367671 -15262449 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1655 213 194 0 0 chr4 140368597 140368633 -15261487 + polypurine Low_complexity Low_complexity 6 41 0 8 1655 28 0 0 0 chr4 140368659 140368687 -15261433 + GC_rich Low_complexity Low_complexity 1 28 0 8 1655 192 158 0 0 chr4 140369061 140369099 -15261021 + CT-rich Low_complexity Low_complexity 1 38 0 8 1655 314 221 13 13 chr4 140370925 140371003 -15259117 + PB1D10 SINE Alu 38 115 -2 8 1655 1211 211 110 80 chr4 140371187 140371588 -15258532 + RMER10A LTR ERVL 3 415 -27 8 1655 240 35 0 0 chr4 140371591 140371620 -15258500 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1655 189 205 0 0 chr4 140371775 140371814 -15258306 - MIRc SINE MIR -142 126 88 8 1655 256 172 184 0 chr4 140371941 140372007 -15258113 + B1_Mur4 SINE Alu 58 137 -13 8 1655 1027 168 0 26 chr4 140373412 140373607 -15256513 - B3 SINE B2 -1 215 26 8 1655 201 175 0 0 chr4 140373622 140373662 -15256458 + (CGTG)n Simple_repeat Simple_repeat 2 41 0 8 1655 262 301 131 37 chr4 140375273 140375380 -15254740 + MIRb SINE MIR 113 229 -39 8 1655 248 329 54 21 chr4 140375750 140375920 -15254200 - MIRc SINE MIR -22 254 72 8 1655 605 203 182 0 chr4 140376343 140376491 -15253629 - ID_B1 SINE B4 -45 179 5 8 1655 22 0 0 0 chr4 140376616 140376638 -15253482 + AT_rich Low_complexity Low_complexity 1 22 0 8 1655 468 327 133 24 chr4 140376850 140377372 -15252748 + L2a LINE L2 2791 3370 -56 8 1655 588 271 184 11 chr4 140377435 140377625 -15252495 + ID_B1 SINE B4 1 223 -1 8 1655 1071 80 0 14 chr4 140377695 140377834 -15252286 + B1_Mus1 SINE Alu 1 137 -11 8 1655 198 0 0 0 chr4 140377834 140377856 -15252264 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 1656 1045 90 7 0 chr4 140378236 140378380 -15251740 + B1_Mus2 SINE Alu 1 145 -2 8 1656 233 327 81 36 chr4 140378586 140378697 -15251423 + MIR SINE MIR 32 147 -61 8 1656 1257 245 4 15 chr4 140378959 140379232 -15250888 - B4A SINE B4 -22 270 1 8 1656 391 291 27 9 chr4 140379441 140379552 -15250568 - PB1D10 SINE Alu 0 117 5 8 1656 915 183 28 42 chr4 140380288 140380505 -15249615 - ID_B1 SINE B4 -10 214 1 8 1656 339 262 29 60 chr4 140381180 140381353 -15248767 + B4 SINE B4 2 169 -55 8 1656 507 284 17 65 chr4 140381421 140381577 -15248543 + B4 SINE B4 92 242 -50 8 1656 315 0 0 0 chr4 140381577 140381612 -15248508 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1656 594 0 0 0 chr4 140381613 140381679 -15248441 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1656 438 280 19 68 chr4 140381679 140381696 -15248424 + B4A SINE B4 243 259 -33 8 1656 384 250 42 0 chr4 140383523 140383619 -15246501 - PB1D10 SINE Alu -16 101 2 8 1656 278 294 2 0 chr4 140384285 140384364 -15245756 + MIRc SINE MIR 44 127 -141 8 1656 295 201 50 79 chr4 140384404 140384544 -15245576 + L1M4 LINE L1 5724 5859 -315 8 1656 202 265 181 14 chr4 140384794 140384932 -15245188 + MIRc SINE MIR 1 151 -117 8 1656 666 49 19 10 chr4 140386305 140386408 -15243712 + B2_Mm1t SINE B2 83 186 -7 8 1656 296 314 86 17 chr4 140388519 140388694 -15241426 + L2b LINE L2 2966 3152 -223 8 1656 388 304 49 42 chr4 140388742 140388886 -15241234 + RSINE1 SINE B4 12 156 -9 8 1656 346 268 39 39 chr4 140388889 140389017 -15241103 + MTE2b LTR MaLR 82 209 -170 8 1656 683 24 12 0 chr4 140390762 140390847 -15239273 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1656 516 93 0 0 chr4 140391555 140391630 -15238490 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1656 1398 207 38 67 chr4 140391710 140392083 -15238037 + ORR1D1 LTR MaLR 1 362 -12 8 1656 412 264 0 70 chr4 140392688 140392802 -15237318 + PB1D9 SINE Alu 4 109 -11 8 1656 1436 166 48 109 chr4 140392856 140393050 -15237070 + MTD LTR MaLR 3 205 -214 8 1656 1350 104 5 15 chr4 140393050 140393246 -15236874 + B2_Mm2 SINE B2 2 195 0 8 1656 1436 170 48 152 chr4 140393246 140393547 -15236573 + MTD LTR MaLR 206 421 0 8 1656 259 233 0 14 chr4 140393626 140393700 -15236420 + C-rich Low_complexity Low_complexity 4 76 0 8 1656 207 244 0 0 chr4 140394264 140394305 -15235815 - MIR SINE MIR -89 119 79 8 1656 306 0 0 0 chr4 140394650 140394684 -15235436 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1656 481 318 52 16 chr4 140395375 140395567 -15234553 + MIRb SINE MIR 17 215 -53 8 1656 288 231 15 0 chr4 140395768 140395833 -15234287 + PB1D10 SINE Alu 51 116 -1 8 1656 880 257 11 6 chr4 140395920 140396100 -15234020 + B3A SINE B2 2 182 -16 8 1656 863 197 8 6 chr4 140396100 140396572 -15233548 + (TATG)n Simple_repeat Simple_repeat 1 473 0 9 1656 599 271 64 13 chr4 140396633 140396790 -15233330 + B4 SINE B4 126 290 -2 9 1656 269 200 0 0 chr4 140397441 140397496 -15232624 - MIRc SINE MIR -130 138 84 9 1656 383 97 113 0 chr4 140398086 140398148 -15231972 - ID4_ SINE ID -13 70 2 9 1656 453 254 25 34 chr4 140398151 140398269 -15231851 - PB1D10 SINE Alu 0 117 1 9 1656 188 346 51 29 chr4 140399609 140399746 -15230374 - MIRb SINE MIR -71 197 58 9 1656 219 69 0 0 chr4 140399862 140399891 -15230229 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 9 1656 263 171 9 0 chr4 140400286 140400392 -15229728 + CT-rich Low_complexity Low_complexity 1 106 0 9 1656 323 136 17 0 chr4 140400906 140400965 -15229155 + (CACCAT)n Simple_repeat Simple_repeat 2 61 0 9 1656 544 136 83 132 chr4 140402424 140402568 -15227552 - B1_Mur4 SINE Alu 0 150 14 9 1656 293 229 56 128 chr4 140402462 140402587 -15227533 - B4 SINE B4 -98 194 79 9 1656 519 17 0 0 chr4 140402968 140403028 -15227092 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 9 1656 298 310 127 17 chr4 140403035 140403153 -15226967 + ID_B1 SINE B4 60 190 -34 9 1656 216 158 0 0 chr4 140403159 140403197 -15226923 + GA-rich Low_complexity Low_complexity 2 39 0 9 1656 263 318 111 20 chr4 140403424 140403623 -15226497 - L2 LINE L2 -703 2716 2500 9 1656 630 218 0 0 chr4 140404232 140404388 -15225732 + (TGGA)n Simple_repeat Simple_repeat 1 156 0 9 1656 184 364 45 0 chr4 140406217 140406305 -15223815 - MIRm SINE MIR -101 175 84 9 1656 312 70 0 0 chr4 140406305 140406348 -15223772 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 9 1656 899 264 14 0 chr4 140407166 140407378 -15222742 + ID_B1 SINE B4 9 223 -1 9 1656 220 27 26 26 chr4 140407617 140407655 -15222465 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 9 1656 1212 62 0 0 chr4 140407655 140407801 -15222319 - B1_Mus2 SINE Alu 0 147 2 9 1656 2685 141 32 5 chr4 140408109 140408515 -15221605 + MTC LTR MaLR 2 418 -3 9 1656 762 11 0 0 chr4 140408615 140408702 -15221418 + (GA)n Simple_repeat Simple_repeat 2 88 0 9 1656 257 239 0 29 chr4 140409289 140409358 -15220762 + ZP3AR Satellite Satellite 21 87 -125 9 1656 367 256 0 0 chr4 140409312 140409394 -15220726 + ID SINE ID 1 82 -142 9 1656 929 282 32 8 chr4 140409606 140409856 -15220264 + MTE2b LTR MaLR 69 324 -55 9 1656 203 156 0 43 chr4 140409856 140409903 -15220217 + C-rich Low_complexity Low_complexity 4 48 0 9 1656 1025 134 7 0 chr4 140409934 140410076 -15220044 - B1_Mus1 SINE Alu -5 143 1 9 1656 281 288 0 0 chr4 140410079 140410145 -15219975 + MTE2b LTR MaLR 314 379 0 9 1656 369 0 0 0 chr4 140410344 140410385 -15219735 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1656 483 18 0 0 chr4 140410987 140411043 -15219077 + (TC)n Simple_repeat Simple_repeat 2 57 0 9 1656 633 80 0 0 chr4 140411043 140411130 -15218990 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 1656 1022 270 39 0 chr4 140411157 140411416 -15218704 - B4A SINE B4 -6 286 18 9 1656 591 53 0 0 chr4 140411416 140411491 -15218629 + (TG)n Simple_repeat Simple_repeat 1 75 0 9 1656 2807 143 11 55 chr4 140411600 140412142 -15217978 - RLTR12B LTR ERVK 0 528 11 9 1656 225 195 0 0 chr4 140412591 140412632 -15217488 - MIR SINE MIR -142 120 80 9 1656 251 226 67 0 chr4 140413794 140413884 -15216236 - MIRm SINE MIR -143 133 31 9 1656 184 279 125 47 chr4 140415044 140415172 -15214948 - MIRc SINE MIR -128 140 3 9 1656 561 30 0 0 chr4 140415820 140415887 -15214233 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9 1656 242 169 0 84 chr4 140415894 140415965 -15214155 - B1_Mus2 SINE Alu -1 146 82 9 1656 534 279 108 15 chr4 140416339 140416608 -15213512 + ORR1E LTR MaLR 64 357 -2 9 1656 3746 49 0 2 chr4 140417499 140417949 -15212171 - L1Md_F2 LINE L1 -1 6581 6133 9 1656 359 292 41 10 chr4 140419347 140419468 -15210652 + PB1D10 SINE Alu 1 121 -28 9 1656 718 193 22 0 chr4 140419605 140419682 -15210438 + ID SINE ID 2 81 -143 9 1656 309 253 0 126 chr4 140419682 140419777 -15210343 + B1F2 SINE Alu 1 83 -66 9 1656 435 106 0 0 chr4 140419778 140419844 -15210276 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1656 312 322 37 79 chr4 140419893 140420082 -15210038 + MER63A DNA AcHobo 30 210 0 9 1656 980 179 24 115 chr4 140420126 140420378 -15209742 - MTEb LTR MaLR -7 372 144 9 1656 1149 95 0 0 chr4 140420379 140420527 -15209593 + B1_Mus1 SINE Alu 1 148 0 9 1656 186 43 0 0 chr4 140420527 140420550 -15209570 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1656 272 265 29 14 chr4 140420603 140420672 -15209448 - MTEb LTR MaLR -254 125 56 9 1656 764 232 79 0 chr4 140420776 140420966 -15209154 - ID_B1 SINE B4 -19 205 1 9 1656 252 263 70 50 chr4 140420982 140421005 -15209115 - BC1_Mm scRNA scRNA -42 110 89 9 1656 742 186 139 69 chr4 140421005 140421207 -15208913 - B3 SINE B2 0 216 1 9 1656 308 178 100 19 chr4 140421207 140421283 -15208837 - ID4 SINE ID -64 88 9 9 1656 1119 42 27 34 chr4 140421455 140421604 -15208516 + B1_Mus1 SINE Alu 1 148 0 9 1656 618 131 0 0 chr4 140421606 140421705 -15208415 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 9 1656 967 135 6 6 chr4 140421705 140421876 -15208244 + (GAAAA)n Simple_repeat Simple_repeat 3 173 0 9 1656 306 0 0 0 chr4 140422386 140422420 -15207700 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1656 226 264 0 0 chr4 140422443 140422496 -15207624 - L1MD LINE L1 -2728 3418 3366 9 1656 348 240 10 30 chr4 140422675 140422774 -15207346 - MTEb LTR MaLR -219 160 64 9 1656 695 248 146 0 chr4 140422814 140422983 -15207137 + MTEa LTR MaLR 10 194 -185 9 1656 540 0 0 0 chr4 140422983 140423043 -15207077 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 1656 695 248 146 0 chr4 140423043 140423079 -15207041 + MTEa LTR MaLR 195 244 -135 9 1656 240 253 75 12 chr4 140423899 140423979 -15206141 - MIR3 SINE MIR -45 163 79 9 1656 259 258 0 15 chr4 140424090 140424157 -15205963 + GA-rich Low_complexity Low_complexity 2 67 0 9 1656 243 0 95 0 chr4 140424220 140424262 -15205858 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 9 1656 212 293 24 12 chr4 140424462 140424545 -15205575 + C-rich Low_complexity Low_complexity 4 87 0 9 1656 827 214 34 0 chr4 140425507 140425685 -15204435 + ID_B1 SINE B4 22 205 -19 9 1656 237 269 50 65 chr4 140425567 140425706 -15204414 + MT2B2 LTR ERVL 167 303 -281 9 1656 225 286 78 48 chr4 140426138 140426241 -15203879 - MIR SINE MIR -81 181 76 9 1656 238 148 0 36 chr4 140429474 140429530 -15200590 + GA-rich Low_complexity Low_complexity 3 56 0 9 1656 519 280 32 26 chr4 140429532 140429686 -15200434 + MLT1J LTR MaLR 211 365 -147 9 1656 1166 105 0 0 chr4 140429720 140429733 -15200387 - B2_Mm2 SINE B2 -24 171 159 9 1656 513 0 0 0 chr4 140429733 140429790 -15200330 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 9 1656 1166 105 0 0 chr4 140429790 140429947 -15200173 - B2_Mm2 SINE B2 -37 158 2 9 1656 316 347 58 0 chr4 140430065 140430186 -15199934 + MER2 DNA MER2_type 79 206 -139 9 1656 2893 135 0 7 chr4 140430186 140430610 -15199510 + MTC LTR MaLR 1 421 0 9 1656 1200 55 0 27 chr4 140431308 140431458 -15198662 + B1_Mus2 SINE Alu 1 146 -1 9 1656 251 38 18 54 chr4 140431459 140431515 -15198605 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 9 1656 652 235 123 0 chr4 140431556 140431735 -15198385 - ID_B1 SINE B4 -20 204 4 9 1656 1244 80 74 0 chr4 140431773 140431921 -15198199 + B2_Mm2 SINE B2 1 149 -46 9 1656 684 0 0 0 chr4 140431921 140431997 -15198123 + (GAAA)n Simple_repeat Simple_repeat 3 78 0 9 1656 1244 80 74 0 chr4 140431997 140432023 -15198097 + B2_Mm2 SINE B2 150 186 -9 9 1656 180 286 0 91 chr4 140432343 140432420 -15197700 + L3 LINE CR1 3496 3565 -924 9 1656 204 135 27 0 chr4 140432469 140432506 -15197614 - MIR SINE MIR -62 146 109 9 1656 411 113 0 0 chr4 140434066 140434128 -15195992 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 9 1656 829 149 0 7 chr4 140434133 140434268 -15195852 - B1_Mus1 SINE Alu -9 139 6 9 1656 246 62 0 0 chr4 140434717 140434749 -15195371 + (TTGGGG)n Simple_repeat Simple_repeat 1 32 0 9 1656 681 317 15 0 chr4 140434810 140435009 -15195111 + ID_B1 SINE B4 15 216 -8 9 1656 531 0 0 0 chr4 140435014 140435073 -15195047 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1656 603 124 0 15 chr4 140435146 140435263 -15194857 + B1_Mur4 SINE Alu 3 116 -4 9 1656 422 18 18 0 chr4 140435409 140435464 -15194656 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1656 248 180 0 0 chr4 140436135 140436185 -15193935 + RSINE1 SINE B4 2 51 -114 9 1656 846 181 0 20 chr4 140436640 140436792 -15193328 + B1_Mur4 SINE Alu 2 150 0 9 1656 594 0 0 0 chr4 140436801 140436867 -15193253 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 1656 252 264 44 44 chr4 140437329 140437420 -15192700 - MER5A1 DNA MER1_type -35 131 41 9 1656 628 247 15 65 chr4 140438363 140438562 -15191558 - B3A SINE B2 -4 194 6 9 1656 236 211 13 0 chr4 140438801 140438877 -15191243 + CT-rich Low_complexity Low_complexity 1 77 0 9 1656 431 248 8 76 chr4 140438877 140438995 -15191125 - PB1D10 SINE Alu -1 116 7 9 1656 231 321 0 69 chr4 140439018 140439105 -15191015 - MER20 DNA MER1_type -47 172 92 9 1656 245 291 22 34 chr4 140439235 140439324 -15190796 - MIRb SINE MIR -57 211 124 9 1656 225 0 0 0 chr4 140439587 140439612 -15190508 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 9 1656 461 217 0 6 chr4 140439617 140439793 -15190327 + (CA)n Simple_repeat Simple_repeat 2 176 0 9 1656 304 232 0 55 chr4 140440270 140440343 -15189777 + ID4 SINE ID 12 80 -3 9 1656 309 298 11 11 chr4 140440490 140440585 -15189535 + CT-rich Low_complexity Low_complexity 2 96 0 9 1656 1451 169 184 22 chr4 140440638 140440959 -15189161 + ORR1D1 LTR MaLR 1 373 -1 1 1656 296 96 0 37 chr4 140441505 140441548 -15188572 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1 1656 1464 39 0 0 chr4 140441548 140441727 -15188393 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1656 296 96 0 37 chr4 140441727 140441737 -15188383 + (TCC)n Simple_repeat Simple_repeat 1 10 0 1 1656 488 181 95 0 chr4 140441737 140441842 -15188278 - B1_Mus2 SINE Alu -7 140 26 1 1656 720 227 67 0 chr4 140441891 140442041 -15188079 - RSINE1 SINE B4 -4 161 2 1 1656 480 318 40 17 chr4 140442391 140442439 -15187681 - B3 SINE B2 0 216 167 1 1656 306 0 0 0 chr4 140442439 140442473 -15187647 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1656 480 318 40 17 chr4 140442473 140442600 -15187520 - B3 SINE B2 -50 166 37 1 1656 857 166 20 7 chr4 140442617 140442763 -15187357 - B1_Mur4 SINE Alu 0 150 3 1 1656 244 354 139 36 chr4 140442769 140443021 -15187099 + L2c LINE L2 3040 3317 -70 1 1656 695 178 241 29 chr4 140443145 140443319 -15186801 + B3 SINE B2 1 211 -5 1 1656 211 183 131 16 chr4 140444039 140444100 -15186020 + PB1D10 SINE Alu 50 117 0 1 1656 252 338 14 0 chr4 140444116 140444190 -15185930 + B3A SINE B2 14 88 -110 1 1656 264 264 56 0 chr4 140444193 140444265 -15185855 + (CACG)n Simple_repeat Simple_repeat 3 78 0 1 1656 841 61 0 0 chr4 140444395 140444509 -15185611 + B1_Mm SINE Alu 34 147 0 1 1656 393 149 0 0 chr4 140444517 140444584 -15185536 - B3 SINE B2 -149 67 1 1 1656 2923 60 7 75 chr4 140444603 140445019 -15185101 - RLTR10 LTR ERVK -2 388 1 1 1656 16544 23 1 5 chr4 140445019 140446974 -15183146 - RLTR10-int LTR ERVK -1 1986 41 1 1656 2972 62 8 40 chr4 140446986 140447387 -15182733 - RLTR10 LTR ERVK -2 388 1 1 1656 325 327 9 19 chr4 140447476 140447582 -15182538 + PB1D10 SINE Alu 12 116 -1 1 1656 724 285 17 128 chr4 140447584 140447882 -15182238 + B4A SINE B4 2 266 -26 1 1656 582 214 199 30 chr4 140447852 140448083 -15182037 + B4A SINE B4 21 290 -2 1 1656 21272 182 27 16 chr4 140448433 140449047 -15181073 + L1_Mur3 LINE L1 892 1513 -4364 1 1656 1386 84 6 0 chr4 140449047 140449225 -15180895 + B2_Mm1a SINE B2 1 179 -14 1 1656 924 36 0 0 chr4 140449227 140449339 -15180781 + (GAA)n Simple_repeat Simple_repeat 2 113 0 1 1656 21272 139 31 26 chr4 140449339 140452843 -15177277 + L1_Mur3 LINE L1 1514 5015 -862 1 1656 1170 57 0 0 chr4 140452843 140452984 -15177136 + B1_Mm SINE Alu 1 141 -6 1 1656 831 21 0 0 chr4 140452987 140453084 -15177036 + (GA)n Simple_repeat Simple_repeat 1 97 0 1 1656 21272 139 31 26 chr4 140453084 140453338 -15176782 + L1_Mur3 LINE L1 5016 5295 -582 1 1656 1126 101 17 17 chr4 140453341 140453522 -15176598 + B2_Mm2 SINE B2 6 186 -9 1 1656 552 231 0 0 chr4 140453522 140453639 -15176481 + L1_Mur3 LINE L1 5289 5405 -475 1 1656 1188 49 0 7 chr4 140453639 140453782 -15176338 + B1_Mus1 SINE Alu 1 142 -6 1 1656 498 17 0 0 chr4 140453783 140453842 -15176278 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1656 2533 173 46 236 chr4 140453843 140454096 -15176024 + L1_Mur2 LINE L1 5021 5275 -602 1 1656 1190 84 17 17 chr4 140454096 140454277 -15175843 + B2_Mm2 SINE B2 6 186 -9 1 1656 2533 173 46 236 chr4 140454277 140454394 -15175726 + L1_Mur2 LINE L1 5276 5395 -482 1 1656 1157 58 0 0 chr4 140454394 140454531 -15175589 + B1_Mus1 SINE Alu 1 137 -11 1 1656 207 0 0 0 chr4 140454531 140454554 -15175566 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1656 396 0 0 0 chr4 140454555 140454599 -15175521 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1656 2533 173 46 236 chr4 140454599 140455101 -15175019 + L1_Mur2 LINE L1 5396 5876 -1 1 1656 346 159 203 0 chr4 140455125 140455194 -15174926 + B1_Mus2 SINE Alu 62 144 -3 1 1656 1564 33 38 0 chr4 140455200 140455384 -15174736 + B2_Mm1t SINE B2 1 191 -2 1 1656 859 53 0 0 chr4 140455384 140455498 -15174622 + B1_Mus2 SINE Alu 34 147 0 1 1656 270 0 0 0 chr4 140455501 140455531 -15174589 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1656 1054 85 14 14 chr4 140455552 140455695 -15174425 + B1_Mus1 SINE Alu 5 147 -1 1 1656 435 38 0 0 chr4 140455704 140455757 -15174363 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1656 558 0 0 0 chr4 140455757 140455818 -15174302 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1656 303 152 68 0 chr4 140455819 140455878 -15174242 + PB1D9 SINE Alu 52 114 -6 1 1656 947 57 14 14 chr4 140455931 140456095 -15174025 - MT-int LTR MaLR -82 1176 887 1 1656 1182 129 118 10 chr4 140456857 140457061 -15173059 - URR1A DNA MER1_type 0 226 1 1 1656 1184 169 106 53 chr4 140457093 140457450 -15172670 + RMER17C LTR ERVK 1 376 -34 1 1656 354 184 0 0 chr4 140458648 140458724 -15171396 + (CAT)n Simple_repeat Simple_repeat 3 78 0 1 1656 234 0 0 0 chr4 140459494 140459520 -15170600 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1 1656 1030 175 72 26 chr4 140459532 140459726 -15170394 + B3 SINE B2 1 203 -13 1 1656 306 246 3 76 chr4 140459745 140459836 -15170284 + B4A SINE B4 222 292 0 1 1656 493 311 22 0 chr4 140464073 140464208 -15165912 + B1F1 SINE Alu 1 138 -11 1 1656 691 137 0 41 chr4 140464255 140464377 -15165743 + B1_Mur4 SINE Alu 22 138 -12 1 1656 502 207 96 75 chr4 140464432 140464578 -15165542 + B1_Mur1 SINE Alu 1 149 0 1 1656 543 266 188 16 chr4 140464596 140464841 -15165279 + B4A SINE B4 5 291 -1 1 1656 224 100 0 24 chr4 140464846 140464887 -15165233 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1656 237 299 29 58 chr4 140464890 140464993 -15165127 - Charlie5 DNA MER1_type -82 2542 2443 1 1656 493 277 43 37 chr4 140465148 140465309 -15164811 - MER20 DNA MER1_type -37 182 21 1 1656 233 235 174 12 chr4 140466106 140466192 -15163928 + B4A SINE B4 130 229 -63 1 1656 746 188 23 0 chr4 140466192 140466320 -15163800 + B1_Mur2 SINE Alu 14 144 -5 1 1656 231 114 0 0 chr4 140466320 140466355 -15163765 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1656 447 19 0 0 chr4 140466440 140466492 -15163628 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1656 289 337 168 6 chr4 140467742 140467915 -15162205 - L2b LINE L2 -80 3295 3095 1 1656 182 259 74 0 chr4 140468793 140468847 -15161273 + L2a LINE L2 2827 2884 -535 1 1656 193 385 0 0 chr4 140469063 140469154 -15160966 + L2a LINE L2 3073 3163 -212 1 1656 304 172 17 0 chr4 140469177 140469235 -15160885 - ID4_ SINE ID -22 61 3 1 1656 426 290 22 22 chr4 140469289 140469423 -15160697 + L2a LINE L2 3292 3425 -1 1 1656 1050 238 62 1 chr4 140469625 140469882 -15160238 + B4A SINE B4 21 291 -1 1 1656 189 0 0 0 chr4 140469893 140469914 -15160206 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1656 3518 18 5 0 chr4 140469960 140470351 -15159769 + MTA_Mm LTR MaLR 1 393 -3 1 1656 1233 41 0 20 chr4 140470351 140470501 -15159619 + B1_Mus2 SINE Alu 1 147 0 1 1656 602 138 178 47 chr4 140471189 140471318 -15158802 + B1_Mus1 SINE Alu 2 147 -1 1 1656 189 0 0 0 chr4 140471497 140471518 -15158602 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1 1656 462 236 130 0 chr4 140471610 140471733 -15158387 + B1_Mur2 SINE Alu 10 148 -1 1 1656 180 111 0 0 chr4 140471739 140471766 -15158354 + (ATG)n Simple_repeat Simple_repeat 3 29 0 1 1656 296 211 13 0 chr4 140471764 140471840 -15158280 + GA-rich Low_complexity Low_complexity 1 77 0 1 1656 908 194 89 0 chr4 140472595 140472786 -15157334 + ID_B1 SINE B4 6 213 -11 1 1656 1041 96 0 0 chr4 140472787 140472943 -15157177 + (TGAA)n Simple_repeat Simple_repeat 2 157 0 1 1656 349 336 0 9 chr4 140472952 140473057 -15157063 + PB1D10 SINE Alu 1 104 -13 1 1656 1197 50 0 0 chr4 140473057 140473196 -15156924 + B1_Mus1 SINE Alu 1 139 -9 1 1656 198 0 0 0 chr4 140473196 140473218 -15156902 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1656 427 238 156 0 chr4 140473832 140473954 -15156166 + ID_B1 SINE B4 84 224 0 1 1656 1015 144 161 0 chr4 140473957 140474137 -15155983 + B3 SINE B2 1 209 -7 1 1656 234 301 68 0 chr4 140474157 140474230 -15155890 + ID4_ SINE ID 4 81 -2 1 1656 1210 68 0 0 chr4 140474239 140474386 -15155734 + B1_Mm SINE Alu 1 147 0 1 1656 228 135 0 0 chr4 140474386 140474423 -15155697 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1656 348 224 118 0 chr4 140474487 140474563 -15155557 + B1F SINE Alu 43 127 -22 1 1656 558 55 0 0 chr4 140474598 140474671 -15155449 + U6 snRNA snRNA 1 73 -34 1 1656 245 293 41 6 chr4 140474675 140474768 -15155352 + B1F2 SINE Alu 31 124 -25 1 1656 414 0 0 0 chr4 140475554 140475600 -15154520 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1656 289 303 28 20 chr4 140475688 140475810 -15154310 - MIR3 SINE MIR -32 176 52 1 1656 525 289 27 0 chr4 140476932 140477081 -15153039 + ID_B1 SINE B4 64 216 -8 1 1656 750 199 210 0 chr4 140477107 140477283 -15152837 + B3 SINE B2 4 216 0 1 1656 384 254 75 23 chr4 140477318 140477451 -15152669 + B1F SINE Alu 10 149 0 1 1656 635 146 171 0 chr4 140478969 140479092 -15151028 + B1_Mur4 SINE Alu 6 149 -1 1 1656 332 270 115 14 chr4 140478973 140479112 -15151008 + B4A SINE B4 94 246 -46 1 1656 827 108 0 8 chr4 140479121 140479251 -15150869 + (GGA)n Simple_repeat Simple_repeat 3 131 0 1 1656 993 140 0 0 chr4 140479257 140479421 -15150699 + (GAGAA)n Simple_repeat Simple_repeat 1 164 0 1 1656 233 250 0 0 chr4 140479478 140479526 -15150594 + B3 SINE B2 84 131 -85 1 1656 421 324 42 3 chr4 140479551 140479706 -15150414 - MIRb SINE MIR -121 155 1 1 1656 533 192 203 24 chr4 140480664 140480787 -15149333 + B1_Mur1 SINE Alu 4 148 -1 1 1656 302 233 156 0 chr4 140480807 140480897 -15149223 + PB1D10 SINE Alu 1 104 -13 1 1656 320 303 0 0 chr4 140480982 140481058 -15149062 + ID SINE ID 1 76 -148 1 1656 240 323 39 84 chr4 140481123 140481302 -15148818 - YREP_Mm Unknown Unknown -1456 356 186 1 1656 589 207 50 0 chr4 140481182 140481303 -15148817 + ID_B1 SINE B4 90 216 -8 1 1656 466 288 0 0 chr4 140482314 140482425 -15147695 + RSINE1 SINE B4 4 114 -51 1 1656 405 0 0 0 chr4 140482425 140482470 -15147650 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1656 1083 118 0 0 chr4 140482471 140482762 -15147358 + (CA)n Simple_repeat Simple_repeat 1 291 0 1 1656 269 304 84 41 chr4 140483605 140483873 -15146247 - L2c LINE L2 -187 3200 2921 1 1656 778 203 78 46 chr4 140483916 140484133 -15145987 - ID_B1 SINE B4 0 224 1 1 1656 515 266 279 66 chr4 140484774 140485075 -15145045 - MTE2a LTR MaLR 0 379 15 1 1656 323 287 88 10 chr4 140485530 140485632 -15144488 + MER81 DNA AcHobo 5 114 0 1 1656 264 244 73 0 chr4 140487611 140487693 -15142427 + MIRc SINE MIR 80 167 -101 1 1656 201 342 40 0 chr4 140488265 140488341 -15141779 + MIR SINE MIR 96 174 -88 1 1656 660 260 11 47 chr4 140488371 140488561 -15141559 + B3A SINE B2 1 183 -15 1 1656 317 248 214 8 chr4 140488791 140488917 -15141203 + MIR SINE MIR 9 160 -102 1 1656 683 154 92 0 chr4 140489498 140489628 -15140492 + B1_Mus1 SINE Alu 1 142 -6 1 1656 484 200 54 18 chr4 140489873 140489985 -15140135 - RSINE1 SINE B4 -39 126 11 1 1656 351 234 108 36 chr4 140489991 140490102 -15140018 - PB1D7 SINE Alu -1 119 1 1 1656 822 259 18 39 chr4 140490123 140490352 -15139768 - ID_B1 SINE B4 0 224 1 1 1656 273 242 76 0 chr4 140490369 140490473 -15139647 - PB1D10 SINE Alu -2 118 5 1 1656 193 224 0 75 chr4 140490715 140490768 -15139352 + MIR SINE MIR 96 144 -118 1 1656 234 0 0 0 chr4 140491941 140491967 -15138153 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1656 228 182 0 0 chr4 140491993 140492037 -15138083 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1656 405 0 0 0 chr4 140492038 140492083 -15138037 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1656 215 242 30 0 chr4 140492597 140492663 -15137457 + G-rich Low_complexity Low_complexity 1 68 0 1 1656 534 259 46 129 chr4 140494290 140494378 -15135742 - B4A SINE B4 -85 207 126 1 1656 1699 160 43 142 chr4 140494378 140494801 -15135319 - ORR1C2 LTR MaLR -3 381 1 1 1656 534 259 46 129 chr4 140494801 140494929 -15135191 - B4A SINE B4 -167 125 9 1 1656 2168 111 3 75 chr4 140494929 140495289 -15134831 - IAPLTR1a_Mm LTR ERVK -3 334 1 1 1656 25500 12 4 0 chr4 140495289 140498234 -15131886 - IAPEz-int LTR ERVK 0 6481 3525 1 1656 880 88 24 0 chr4 140498234 140498359 -15131761 - IAPEz-int LTR ERVK -2770 4910 4783 1 1656 1769 111 4 4 chr4 140498354 140498616 -15131504 - IAPEz-int LTR ERVK -5183 2497 2236 1 1656 445 66 0 32 chr4 140498605 140498668 -15131452 - IAPEz-int LTR ERVK -5062 1419 1359 1 1656 3329 64 22 11 chr4 140498668 140499390 -15130730 - IAPEz-int LTR ERVK -5819 662 9 1 1656 2184 108 3 75 chr4 140499391 140499751 -15130369 - IAPLTR1a_Mm LTR ERVK -3 334 1 1 1656 1004 82 57 29 chr4 140499784 140499959 -15130161 - B2_Mm2 SINE B2 0 195 16 1 1656 668 235 34 0 chr4 140500555 140500630 -15129490 + ID SINE ID 5 84 -140 1 1656 286 253 176 0 chr4 140500630 140500721 -15129399 + PB1D10 SINE Alu 3 109 -8 2 1656 459 208 46 77 chr4 140501394 140501416 -15128704 + B4 SINE B4 73 90 -202 3 1656 820 90 13 0 chr4 140501416 140501554 -15128566 + B1_Mus1 SINE Alu 1 149 -1 4 1656 405 136 0 0 chr4 140501555 140501621 -15128499 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 5 1656 235 240 20 0 chr4 140501907 140501957 -15128163 + PB1D10 SINE Alu 29 79 -38 6 1656 205 266 31 0 chr4 140502461 140502525 -15127595 + C-rich Low_complexity Low_complexity 1 66 0 7 1656 555 102 80 20 chr4 140503179 140503279 -15126841 + B1_Mur4 SINE Alu 44 149 -1 8 1656 816 65 0 0 chr4 140503279 140503386 -15126734 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 9 1656 704 33 11 0 chr4 140503386 140503477 -15126643 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 1656 486 0 0 0 chr4 140504394 140504448 -15125672 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1656 608 194 153 0 chr4 140504867 140504991 -15125129 + B1_Mur2 SINE Alu 1 143 -6 1 1656 675 249 107 0 chr4 140506836 140507005 -15123115 + B3A SINE B2 1 187 -11 1 1656 905 221 58 10 chr4 140507016 140507222 -15122898 + B3 SINE B2 1 216 0 1 1656 36 0 0 0 chr4 140507224 140507260 -15122860 + AT_rich Low_complexity Low_complexity 1 36 0 1 1656 1641 47 0 5 chr4 140507358 140507552 -15122568 - B2_Mm2 SINE B2 -2 193 1 1 1656 189 0 0 0 chr4 140508272 140508293 -15121827 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1656 219 69 0 0 chr4 140508663 140508692 -15121428 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1656 230 391 5 54 chr4 140508761 140508964 -15121156 - LTR16A1 LTR ERVL 0 456 264 1 1656 265 160 0 20 chr4 140509132 140509183 -15120937 + B3A SINE B2 1 50 -148 2 1657 488 331 13 19 chr4 140509278 140509435 -15120685 + RSINE1 SINE B4 6 161 -4 2 1657 192 40 0 0 chr4 140509435 140509460 -15120660 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1657 492 237 67 17 chr4 140509466 140509586 -15120534 + B1_Mur3 SINE Alu 1 126 -23 2 1657 979 154 0 0 chr4 140509595 140509744 -15120376 + B1_Mur4 SINE Alu 2 150 0 2 1657 651 88 0 0 chr4 140510025 140510116 -15120004 + (TCC)n Simple_repeat Simple_repeat 2 92 0 2 1657 1048 191 11 5 chr4 140510137 140510326 -15119794 - B3 SINE B2 -24 192 3 2 1657 1486 239 154 26 chr4 140510358 140510538 -15119582 - RLTR24 LTR ERV1 -1 528 335 2 1657 1440 73 21 16 chr4 140510538 140510732 -15119388 + B2_Mm2 SINE B2 1 195 0 2 1657 1486 239 154 26 chr4 140510732 140511019 -15119101 - RLTR24 LTR ERV1 -195 334 1 2 1657 39 0 0 0 chr4 140511030 140511069 -15119051 + AT_rich Low_complexity Low_complexity 1 39 0 2 1657 277 333 65 0 chr4 140511143 140511236 -15118884 - ID4_ SINE ID -46 106 8 3 1657 264 120 0 0 chr4 140511247 140511297 -15118823 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1657 193 164 33 0 chr4 140511339 140511371 -15118749 + polypyrimidine Low_complexity Low_complexity 31 63 0 3 1657 793 184 49 14 chr4 140511371 140511514 -15118606 - B1_Mus1 SINE Alu 0 148 1 3 1657 193 164 33 0 chr4 140511514 140511542 -15118578 + polypyrimidine Low_complexity Low_complexity 2 30 0 3 1657 700 319 24 3 chr4 140511544 140511749 -15118371 - ID_B1 SINE B4 -46 246 35 3 1657 3593 198 65 68 chr4 140511765 140512697 -15117423 + RLTR21 LTR ERVK 128 1057 -515 3 1657 198 0 0 0 chr4 140512697 140512719 -15117401 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1657 3593 198 65 68 chr4 140512719 140512780 -15117340 + RLTR21 LTR ERVK 1058 1117 -455 3 1657 360 298 53 0 chr4 140512941 140512963 -15117157 - B4 SINE B4 -77 215 141 3 1657 567 118 21 0 chr4 140512963 140513056 -15117064 - PB1D9 SINE Alu -16 104 10 3 1657 360 298 53 0 chr4 140513056 140513072 -15117048 - B4 SINE B4 -77 140 78 3 1657 226 184 0 0 chr4 140513258 140513296 -15116824 - MIR SINE MIR -144 118 81 4 1657 254 302 111 8 chr4 140514020 140514137 -15115983 + MIRb SINE MIR 87 215 -53 4 1657 904 232 5 26 chr4 140514649 140514839 -15115281 - B3 SINE B2 -30 186 1 4 1657 187 266 15 15 chr4 140515042 140515107 -15115013 + MIRb SINE MIR 146 210 -58 4 1657 1124 80 0 0 chr4 140516251 140516389 -15113731 + B1_Mus1 SINE Alu 2 139 -9 4 1657 249 246 0 58 chr4 140516480 140516549 -15113571 + ID_B1 SINE B4 85 149 -75 4 1657 241 270 58 75 chr4 140516549 140516600 -15113520 + B1F1 SINE Alu 4 121 -28 4 1657 373 218 59 0 chr4 140516735 140516836 -15113284 - ID_B1 SINE B4 0 224 118 4 1657 518 200 136 43 chr4 140518229 140518391 -15111729 - B3 SINE B2 0 216 40 4 1657 523 189 22 43 chr4 140518421 140518558 -15111562 - PB1D10 SINE Alu -17 130 1 4 1657 554 244 0 0 chr4 140518575 140518702 -15111418 + ID_B1 SINE B4 98 224 0 5 1657 291 331 78 8 chr4 140518964 140519092 -15111028 + Lx8 LINE L1 7130 7266 -207 5 1657 193 314 0 0 chr4 140519419 140519470 -15110650 + L2b LINE L2 3236 3286 -89 5 1657 1439 78 21 0 chr4 140519534 140519725 -15110395 + B2_Mm2 SINE B2 1 195 0 5 1657 261 306 43 51 chr4 140519776 140519893 -15110227 - MIRb SINE MIR -93 175 60 5 1657 342 262 95 32 chr4 140520279 140520405 -15109715 + RSINE1 SINE B4 3 136 -29 5 1657 310 239 87 0 chr4 140520720 140520812 -15109308 + B4A SINE B4 65 164 -128 5 1657 222 0 0 73 chr4 140521114 140521155 -15108965 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1657 986 112 15 0 chr4 140521157 140521291 -15108829 - B1_Mur3 SINE Alu -13 136 1 5 1657 1220 75 0 0 chr4 140521322 140521469 -15108651 + B1_Mus1 SINE Alu 2 148 0 5 1657 325 271 2 19 chr4 140521534 140521646 -15108474 - B4 SINE B4 -57 108 3 6 1657 476 240 19 9 chr4 140521787 140521892 -15108228 + PB1D10 SINE Alu 2 107 -10 6 1657 354 23 0 0 chr4 140522800 140522843 -15107277 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1657 626 252 12 54 chr4 140522845 140523013 -15107107 - ID_B1 SINE B4 -20 204 44 6 1657 723 207 37 0 chr4 140523113 140523248 -15106872 + B1_Mur4 SINE Alu 5 144 -6 6 1657 25 0 0 0 chr4 140523296 140523321 -15106799 + AT_rich Low_complexity Low_complexity 1 25 0 6 1657 1661 188 231 13 chr4 140523327 140523787 -15106333 - RLTR12A LTR ERVK -5 563 4 6 1657 1205 68 0 0 chr4 140524082 140524230 -15105890 + B1_Mus1 SINE Alu 1 148 0 6 1657 222 128 0 0 chr4 140524233 140524272 -15105848 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1657 235 292 0 89 chr4 140524509 140524588 -15105532 + ID4_ SINE ID 1 72 -11 6 1657 192 152 0 0 chr4 140524807 140524840 -15105280 + GA-rich Low_complexity Low_complexity 3 35 0 7 1657 1037 80 47 0 chr4 140524942 140525092 -15105028 + B2_Mm2 SINE B2 1 157 -38 7 1657 180 111 0 0 chr4 140525092 140525119 -15105001 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7 1657 537 68 0 0 chr4 140525356 140525430 -15104690 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1657 369 176 15 0 chr4 140525492 140525560 -15104560 - B3A SINE B2 -121 77 9 7 1657 301 212 0 15 chr4 140525638 140525705 -15104415 + PB1D10 SINE Alu 52 117 0 7 1657 1142 68 0 39 chr4 140525707 140525844 -15104276 + B1_Mus2 SINE Alu 1 137 -10 7 1657 285 29 0 0 chr4 140525844 140525878 -15104242 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1657 1142 68 0 39 chr4 140525878 140525893 -15104227 + B1_Mus2 SINE Alu 138 147 0 7 1657 791 265 29 43 chr4 140525909 140526189 -15103931 + B4A SINE B4 3 278 -14 7 1657 1354 214 216 12 chr4 140526207 140526290 -15103830 - RLTR16 LTR ERVK -4 501 417 7 1657 252 122 0 0 chr4 140526290 140526331 -15103789 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1657 1354 214 216 12 chr4 140526331 140526663 -15103457 - RLTR16 LTR ERVK -89 416 2 7 1657 764 179 7 21 chr4 140526717 140526860 -15103260 + B1_Mur4 SINE Alu 9 149 -1 8 1657 678 65 0 0 chr4 140528025 140528117 -15102003 + (GGAA)n Simple_repeat Simple_repeat 3 94 0 8 1657 755 190 21 7 chr4 140528117 140528260 -15101860 + B1_Mus1 SINE Alu 3 147 -1 8 1657 25 75 0 0 chr4 140528302 140528355 -15101765 + AT_rich Low_complexity Low_complexity 1 53 0 8 1657 247 286 0 0 chr4 140530121 140530184 -15099936 + (CACG)n Simple_repeat Simple_repeat 2 64 0 8 1657 219 271 43 0 chr4 140530428 140530498 -15099622 - B4A SINE B4 -218 74 2 8 1657 350 305 59 8 chr4 140530888 140530902 -15099218 + B4A SINE B4 71 90 -202 8 1657 724 195 14 0 chr4 140530902 140531039 -15099081 + B1F SINE Alu 1 146 -3 8 1657 301 284 12 0 chr4 140531070 140531151 -15098969 + ID4 SINE ID 1 82 -1 8 1657 245 281 62 88 chr4 140532776 140532889 -15097231 + PB1D10 SINE Alu 6 115 -2 9 1657 395 209 26 0 chr4 140532896 140532983 -15097137 + PB1D9 SINE Alu 22 110 -10 9 1657 594 161 76 8 chr4 140533748 140533867 -15096253 - B1_Mus1 SINE Alu -2 146 20 9 1657 1230 54 0 0 chr4 140534510 140534657 -15095463 - B1_Mm SINE Alu 0 147 1 9 1657 407 147 36 51 chr4 140535536 140535655 -15094465 + B1F SINE Alu 18 130 -19 9 1657 1370 60 60 5 chr4 140536096 140536280 -15093840 - B2_Mm2 SINE B2 0 195 2 9 1657 333 290 0 86 chr4 140537107 140537224 -15092896 - PB1D10 SINE Alu -9 108 2 9 1657 218 246 0 76 chr4 140537167 140537233 -15092887 - B4A SINE B4 -149 143 83 9 1657 2431 113 40 15 chr4 140537260 140537663 -15092457 - MTC LTR MaLR -8 413 1 9 1657 615 259 60 6 chr4 140537663 140537830 -15092290 - B3A SINE B2 -17 181 6 9 1657 372 233 10 82 chr4 140537842 140537940 -15092180 - PB1D10 SINE Alu -1 116 26 1 1657 294 115 0 0 chr4 140537996 140538048 -15092072 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1657 216 241 52 0 chr4 140538130 140538188 -15091932 + MIR SINE MIR 89 149 -113 1 1657 460 244 82 52 chr4 140538399 140538429 -15091691 - ID_B1 SINE B4 0 224 199 1 1657 1970 100 49 85 chr4 140538429 140538668 -15091452 - RMER17C LTR ERVK 0 410 193 1 1657 657 38 0 0 chr4 140538668 140538748 -15091372 + (GGA)n Simple_repeat Simple_repeat 2 81 0 1 1657 1970 100 49 85 chr4 140538748 140538933 -15091187 - RMER17C LTR ERVK -218 192 2 1 1657 460 244 82 52 chr4 140538933 140539036 -15091084 - ID_B1 SINE B4 -26 198 87 1 1657 414 206 96 19 chr4 140539062 140539166 -15090954 - PB1D10 SINE Alu -5 112 1 1 1657 405 86 0 0 chr4 140539838 140539896 -15090224 + (TCC)n Simple_repeat Simple_repeat 2 59 0 1 1657 1174 79 67 0 chr4 140539897 140540062 -15090058 - B2_Mm1t SINE B2 -17 176 1 1 1657 414 250 11 0 chr4 140540189 140540281 -15089839 + PB1D9 SINE Alu 22 114 -6 1 1657 222 241 94 36 chr4 140540592 140540730 -15089390 + L2 LINE L2 2476 2621 -798 1 1657 706 179 178 139 chr4 140541420 140541461 -15088659 + B3 SINE B2 1 40 -176 1 1657 1198 68 0 0 chr4 140541461 140541609 -15088511 + B1_Mus1 SINE Alu 1 148 0 1 1657 706 179 178 139 chr4 140541609 140541775 -15088345 + B3 SINE B2 41 216 0 1 1657 351 272 125 10 chr4 140541802 140541906 -15088214 + RSINE1 SINE B4 6 121 -44 1 1657 522 0 0 0 chr4 140541941 140541999 -15088121 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1657 252 300 12 0 chr4 140542031 140542111 -15088009 - MIRc SINE MIR -133 135 55 1 1657 279 273 30 47 chr4 140542209 140542378 -15087742 + (TCTG)n Simple_repeat Simple_repeat 2 167 0 1 1657 231 301 39 28 chr4 140542436 140542614 -15087506 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 1 1657 239 0 32 0 chr4 140543931 140543962 -15086158 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1657 1132 66 0 0 chr4 140543962 140544099 -15086021 - B1_Mus2 SINE Alu -8 139 3 1 1657 180 77 0 0 chr4 140544149 140544175 -15085945 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1657 405 223 128 0 chr4 140544183 140544277 -15085843 - B3 SINE B2 -110 106 1 1 1657 542 252 43 7 chr4 140544282 140544422 -15085698 - ID_B1 SINE B4 0 224 80 1 1657 212 258 0 16 chr4 140544529 140544592 -15085528 - RSINE1 SINE B4 -102 63 2 1 1657 294 311 105 33 chr4 140545809 140545962 -15084158 + MIR SINE MIR 76 243 -25 1 1657 529 211 13 2 chr4 140546473 140546594 -15083526 - B1_Mur4 SINE Alu -20 127 5 1 1657 246 232 142 20 chr4 140546649 140546765 -15083355 + MIR SINE MIR 19 150 -126 1 1657 734 254 100 9 chr4 140546766 140546996 -15083124 + B4A SINE B4 7 257 -35 1 1657 1216 48 0 20 chr4 140546996 140547145 -15082975 + B1_Mus2 SINE Alu 2 147 0 1 1657 28 0 0 0 chr4 140547145 140547173 -15082947 + AT_rich Low_complexity Low_complexity 1 28 0 1 1657 1481 190 56 22 chr4 140548701 140549023 -15081097 - MTD LTR MaLR -31 388 56 1 1657 384 22 0 0 chr4 140549026 140549071 -15081049 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1 1657 1199 62 0 12 chr4 140549071 140549233 -15080887 - B2_Mm2 SINE B2 -34 161 2 1 1657 286 176 0 0 chr4 140549233 140549284 -15080836 - MTD LTR MaLR -361 60 10 1 1657 330 276 126 59 chr4 140549305 140549440 -15080680 + B4A SINE B4 20 163 -129 1 1657 289 336 10 0 chr4 140550926 140551030 -15079090 - MIR SINE MIR -87 175 71 1 1657 237 228 77 0 chr4 140552809 140552885 -15077235 + MIR SINE MIR 61 149 -119 1 1657 1479 65 38 0 chr4 140553072 140553257 -15076863 - B2_Mm2 SINE B2 -2 193 2 1 1657 398 157 48 12 chr4 140553416 140553500 -15076620 + PB1D7 SINE Alu 11 97 -23 1 1657 295 319 24 40 chr4 140553500 140553540 -15076580 + B4A SINE B4 96 217 -75 1 1657 390 260 31 10 chr4 140553652 140553749 -15076371 - B1F SINE Alu -30 119 21 1 1657 378 302 17 8 chr4 140553749 140553769 -15076351 - ID_B1 SINE B4 -27 197 80 1 1657 217 231 115 0 chr4 140553858 140553910 -15076210 + B1F SINE Alu 89 146 -3 1 1657 568 188 76 30 chr4 140553959 140554091 -15076029 + ID_B1 SINE B4 87 224 0 1 1657 1708 26 0 0 chr4 140554312 140554503 -15075617 - B2_Mm1a SINE B2 -1 192 2 1 1657 386 233 56 37 chr4 140554530 140554637 -15075483 + PB1D9 SINE Alu 10 118 -2 1 1657 416 281 18 0 chr4 140554655 140554769 -15075351 + PB1D10 SINE Alu 2 117 0 1 1657 1094 170 43 14 chr4 140555342 140555551 -15074569 - B3 SINE B2 0 216 2 1 1657 693 183 30 0 chr4 140555732 140555863 -15074257 + B1_Mur1 SINE Alu 10 144 -5 1 1657 263 294 63 32 chr4 140555877 140555972 -15074148 + PB1D10 SINE Alu 17 114 -35 1 1657 493 238 3 6 chr4 140557042 140557353 -15072767 + (TG)n Simple_repeat Simple_repeat 1 310 0 1 1657 308 157 0 0 chr4 140557358 140557409 -15072711 - HAL1-3A_ME LINE L1 -836 2022 1972 1 1657 201 281 30 50 chr4 140558165 140558266 -15071854 - MIR SINE MIR -106 156 58 1 1657 458 244 26 9 chr4 140560474 140560590 -15069530 + PB1D9 SINE Alu 1 118 -2 1 1657 258 200 48 32 chr4 140560613 140560675 -15069445 + B1F1 SINE Alu 86 148 -1 1 1657 477 0 0 0 chr4 140561518 140561571 -15068549 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1657 247 267 0 0 chr4 140562490 140562550 -15067570 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1657 3803 39 5 0 chr4 140563264 140563698 -15066422 - RLTR10C LTR ERVK 0 436 1 1 1657 193 211 255 33 chr4 140563862 140563984 -15066136 - MIRm SINE MIR -108 168 17 1 1657 774 136 8 0 chr4 140564474 140564599 -15065521 - B1_Mur4 SINE Alu -12 138 13 1 1657 1531 148 130 7 chr4 140564605 140564898 -15065222 - ORR1B2 LTR MaLR -37 330 2 1 1657 957 78 39 9 chr4 140565080 140565623 -15064497 + (CCCTAA)n Simple_repeat Simple_repeat 1 559 0 1 1657 1015 77 42 7 chr4 140565733 140565876 -15064244 + B1_Mus1 SINE Alu 1 148 0 1 1657 218 206 0 16 chr4 140566291 140566355 -15063765 + GA-rich Low_complexity Low_complexity 4 66 0 1 1657 633 172 91 63 chr4 140568390 140568533 -15061587 - B1_Mus1 SINE Alu 0 148 2 1 1657 1005 151 207 0 chr4 140569249 140569428 -15060692 + B3 SINE B2 1 216 0 1 1657 1276 40 0 0 chr4 140574316 140574464 -15055656 + B1_Mus1 SINE Alu 1 148 0 1 1657 213 244 78 44 chr4 140576494 140576584 -15053536 + MIRb SINE MIR 88 180 -88 1 1657 900 114 7 29 chr4 140578482 140578618 -15051502 - B1_Mur4 SINE Alu -13 137 5 1 1657 385 319 82 6 chr4 140578665 140578694 -15051426 - B4 SINE B4 -46 246 124 1 1657 651 208 0 0 chr4 140578694 140578814 -15051306 - B1_Mur2 SINE Alu -29 120 1 1 1657 754 185 43 0 chr4 140578813 140578975 -15051145 - B3 SINE B2 -1 215 47 1 1657 315 308 48 0 chr4 140579097 140579201 -15050919 - BC1_Mm scRNA scRNA -43 109 1 1 1657 369 336 36 0 chr4 140579212 140579322 -15050798 - B1F SINE Alu -35 114 1 1 1657 491 382 12 0 chr4 140579322 140579394 -15050726 - ID SINE ID -142 82 9 1 1657 606 212 85 28 chr4 140579640 140579781 -15050339 + B1F2 SINE Alu 1 149 0 1 1657 342 311 116 39 chr4 140580011 140580322 -15049798 - L1MB5 LINE L1 -282 5892 5558 1 1657 509 102 22 43 chr4 140580694 140580786 -15049334 - B1_Mus2 SINE Alu -2 145 56 1 1657 756 227 34 17 chr4 140580817 140580992 -15049128 + B3 SINE B2 38 215 -1 1 1657 410 261 25 42 chr4 140581729 140581849 -15048271 + MIRb SINE MIR 79 196 -72 1 1657 192 309 134 0 chr4 140582547 140582644 -15047476 - MIR SINE MIR -77 131 22 1 1657 267 31 0 0 chr4 140583227 140583259 -15046861 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1657 292 268 28 0 chr4 140583269 140583340 -15046780 - ID4 SINE ID -10 73 1 1 1657 963 218 96 0 chr4 140583379 140583567 -15046553 - B3 SINE B2 -10 206 1 1 1657 365 233 96 15 chr4 140583653 140583788 -15046332 - B1F1 SINE Alu -1 148 3 1 1657 441 220 153 21 chr4 140583997 140584141 -15045979 + RMER15 LTR ERVL 410 572 -3 1 1657 1130 174 59 27 chr4 140584745 140584964 -15045156 + URR1A DNA MER1_type 1 226 0 1 1657 252 299 60 7 chr4 140586352 140586473 -15043647 - MIRm SINE MIR -56 206 80 1 1657 1275 197 9 0 chr4 140587403 140587616 -15042504 - B3 SINE B2 0 216 2 1 1657 859 149 42 21 chr4 140588307 140588451 -15041669 - B1_Mur2 SINE Alu -2 147 1 1 1657 197 304 135 31 chr4 140589638 140589801 -15040319 - MIRb SINE MIR -41 227 48 1 1657 182 272 96 24 chr4 140590915 140590998 -15039122 - MIR SINE MIR -149 113 25 1 1657 297 303 88 25 chr4 140592144 140592303 -15037817 + B4A SINE B4 1 169 -123 1 1657 335 267 38 48 chr4 140593001 140593129 -15036991 + MIR SINE MIR 27 152 -116 1 1657 1287 171 5 19 chr4 140593135 140593350 -15036770 + B3 SINE B2 1 212 -4 1 1657 661 179 8 17 chr4 140593501 140593620 -15036500 - PB1D9 SINE Alu 0 120 3 1 1657 373 94 141 0 chr4 140594939 140595003 -15035117 - B1_Mm SINE Alu -3 144 72 1 1657 508 278 26 0 chr4 140594998 140595113 -15035007 - B1F SINE Alu -19 130 13 1 1657 374 299 25 25 chr4 140595007 140595127 -15034993 - ID_B1 SINE B4 -25 199 80 1 1657 207 0 0 0 chr4 140595137 140595160 -15034960 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1657 874 184 0 0 chr4 140595160 140595296 -15034824 - B1_Mur1 SINE Alu -13 136 1 1 1657 375 358 68 0 chr4 140595483 140595631 -15034489 + B3A SINE B2 13 170 -28 1 1657 1247 35 7 0 chr4 140595654 140595799 -15034321 + B1_Mus2 SINE Alu 2 147 0 2 1657 1410 91 11 0 chr4 140595845 140596031 -15034089 + B2_Mm1t SINE B2 1 188 -5 2 1657 736 226 0 0 chr4 140596062 140596199 -15033921 + B1_Mus2 SINE Alu 5 141 -6 2 1657 1381 63 23 0 chr4 140596229 140596404 -15033716 + B2_Mm2 SINE B2 3 181 -14 2 1657 400 82 0 12 chr4 140596432 140596540 -15033580 + B2_Mm2 SINE B2 47 189 -6 2 1657 301 203 72 0 chr4 140596701 140596770 -15033350 + Charlie5 DNA MER1_type 26 99 -2525 2 1657 192 40 0 0 chr4 140597170 140597195 -15032925 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1657 203 133 0 0 chr4 140597492 140597522 -15032598 + (CCCCCG)n Simple_repeat Simple_repeat 2 31 0 2 1657 1222 41 0 7 chr4 140598174 140598322 -15031798 + B1_Mm SINE Alu 1 147 0 2 1657 186 43 0 0 chr4 140598323 140598346 -15031774 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2 1657 216 282 34 30 chr4 140599034 140599153 -15030967 + MIRm SINE MIR 77 197 -71 2 1657 323 280 46 9 chr4 140600014 140600122 -15029998 + PB1D10 SINE Alu 1 112 -5 2 1657 461 305 30 0 chr4 140600129 140600260 -15029860 + RSINE1 SINE B4 2 136 -29 2 1657 876 69 0 0 chr4 140600261 140600377 -15029743 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1657 579 188 0 4 chr4 140600656 140600777 -15029343 + B1F2 SINE Alu 40 149 0 2 1657 226 373 15 49 chr4 140601167 140601370 -15028750 + MT2B LTR ERVL 39 234 -367 2 1657 671 278 39 11 chr4 140601252 140601434 -15028686 + ID_B1 SINE B4 36 222 -2 2 1657 630 196 19 0 chr4 140601456 140601563 -15028557 + PB1D9 SINE Alu 5 113 -7 2 1657 263 282 185 14 chr4 140601595 140601733 -15028387 + MIRm SINE MIR 32 184 -84 2 1657 269 213 57 105 chr4 140605103 140605208 -15024912 - PB1D9 SINE Alu -20 100 1 2 1657 1263 47 0 0 chr4 140607442 140607590 -15022530 - B1_Mus1 SINE Alu 0 148 1 2 1657 421 287 19 0 chr4 140607734 140607842 -15022278 - PB1D10 SINE Alu -7 110 1 2 1657 555 288 85 36 chr4 140608424 140608647 -15021473 + B4A SINE B4 1 234 -58 2 1657 189 0 0 0 chr4 140608762 140608783 -15021337 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1657 335 263 113 0 chr4 140610253 140610360 -15019760 + MIRc SINE MIR 47 166 -110 2 1657 269 243 25 66 chr4 140610493 140610586 -15019534 - MIR3 SINE MIR -46 162 77 2 1657 2376 134 36 11 chr4 140610840 140611284 -15018836 + RMER6A LTR ERVK 299 753 -3 2 1657 340 308 22 0 chr4 140611415 140611506 -15018614 + PB1D10 SINE Alu 4 96 -21 2 1657 248 293 84 25 chr4 140611506 140611534 -15018586 + B4A SINE B4 89 214 -78 2 1657 1211 26 0 7 chr4 140611536 140611690 -15018430 + B2_Mm1a SINE B2 2 154 -39 2 1657 297 0 0 0 chr4 140611690 140611723 -15018397 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1657 566 239 123 26 chr4 140611731 140611886 -15018234 + B3 SINE B2 34 203 -13 2 1657 1180 35 28 0 chr4 140611948 140612090 -15018030 + B1_Mus2 SINE Alu 2 147 0 2 1657 708 285 32 20 chr4 140612108 140612157 -15017963 + B4A SINE B4 43 94 -198 2 1657 2636 131 39 22 chr4 140612157 140612570 -15017550 + MTC LTR MaLR 2 421 0 2 1657 708 285 32 20 chr4 140612570 140612767 -15017353 + B4A SINE B4 95 292 0 2 1657 953 196 103 5 chr4 140612978 140613173 -15016947 + B3 SINE B2 2 215 -1 2 1657 205 344 33 81 chr4 140613232 140613465 -15016655 + MIR SINE MIR 13 245 -23 2 1657 1167 48 7 0 chr4 140613728 140613873 -15016247 - B1_Mus1 SINE Alu -2 146 1 2 1657 255 365 15 31 chr4 140614340 140614470 -15015650 - MIRb SINE MIR -104 164 37 2 1657 441 316 14 2 chr4 140614514 140614653 -15015467 - ID_B1 SINE B4 -140 152 10 2 1657 216 274 121 6 chr4 140614884 140615049 -15015071 + L2 LINE L2 2898 3081 -338 2 1657 306 73 0 0 chr4 140615263 140615304 -15014816 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 1657 24 53 0 0 chr4 140616393 140616431 -15013689 + GC_rich Low_complexity Low_complexity 1 38 0 2 1657 362 197 0 0 chr4 140617224 140617285 -15012835 + B3A SINE B2 20 80 -118 2 1657 27 29 0 0 chr4 140617305 140617339 -15012781 + AT_rich Low_complexity Low_complexity 1 34 0 2 1657 499 176 55 18 chr4 140617596 140617706 -15012414 + B1_Mm SINE Alu 34 147 0 2 1657 1099 86 111 0 chr4 140617728 140617890 -15012230 + B2_Mm2 SINE B2 2 181 -14 2 1657 1181 58 0 0 chr4 140617987 140618125 -15011995 + B1_Mus2 SINE Alu 2 139 -8 2 1657 270 0 43 43 chr4 140618127 140618174 -15011946 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1657 413 187 132 0 chr4 140618219 140618310 -15011810 - B1F SINE Alu -4 145 43 2 1657 291 213 40 13 chr4 140618455 140618531 -15011589 - ID4_ SINE ID -3 80 3 2 1657 551 322 60 41 chr4 140618683 140618949 -15011171 + MLT1C LTR MaLR 11 281 -186 2 1657 3802 150 123 53 chr4 140619047 140619871 -15010249 + RMER19B LTR ERVK 1 884 -18 2 1657 1221 61 0 0 chr4 140619871 140620018 -15010102 + B1_Mus2 SINE Alu 1 147 0 2 1657 3802 150 123 53 chr4 140620018 140620029 -15010091 + RMER19B LTR ERVK 885 895 -7 2 1657 380 269 40 48 chr4 140620052 140620177 -15009943 - B1F1 SINE Alu -10 139 16 2 1657 517 289 84 6 chr4 140620199 140620366 -15009754 - ID_B1 SINE B4 -22 202 23 2 1657 297 242 29 29 chr4 140620742 140620844 -15009276 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 1657 183 42 0 0 chr4 140620848 140620872 -15009248 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1657 312 105 94 10 chr4 140620877 140620956 -15009164 - B1_Mur1 SINE Alu -24 125 40 2 1657 424 189 31 21 chr4 140621246 140621343 -15008777 + B3 SINE B2 116 213 -3 2 1657 1027 226 10 10 chr4 140621484 140621690 -15008430 + B3 SINE B2 1 206 -10 2 1657 428 242 177 32 chr4 140621705 140621863 -15008257 - B3A SINE B2 -16 182 2 2 1657 287 330 48 0 chr4 140621874 140621977 -15008143 - PB1D9 SINE Alu -11 109 2 2 1657 203 311 38 1 chr4 140624715 140624793 -15005327 - MIRb SINE MIR -28 240 157 2 1657 887 219 63 37 chr4 140626928 140627198 -15002922 - B4 SINE B4 -14 278 2 2 1657 196 272 273 20 chr4 140627379 140627529 -15002591 + MIR SINE MIR 69 256 -6 2 1657 935 156 122 20 chr4 140628662 140628858 -15001262 + URR1B DNA MER1_type 1 216 -9 2 1657 626 152 53 9 chr4 140629998 140630111 -15000009 - B1_Mur2 SINE Alu -15 134 17 2 1657 256 329 14 0 chr4 140630119 140630192 -14999928 + MER102a DNA MER1_type 133 206 -124 2 1657 1232 68 0 0 chr4 140630424 140630572 -14999548 - B1_Mus1 SINE Alu 0 148 1 2 1657 195 42 0 0 chr4 140630808 140630832 -14999288 + (G)n Simple_repeat Simple_repeat 1 24 0 2 1657 244 299 58 13 chr4 140631142 140631298 -14998822 + RSINE1 SINE B4 2 164 -1 2 1657 800 191 0 0 chr4 140631346 140631482 -14998638 - B1_Mur1 SINE Alu -6 143 8 2 1657 222 300 75 0 chr4 140631475 140631555 -14998565 + RSINE1 SINE B4 79 164 -1 2 1657 1223 62 0 0 chr4 140631671 140631816 -14998304 + B1_Mm SINE Alu 2 146 -1 2 1657 568 227 0 0 chr4 140631859 140631969 -14998151 + B3 SINE B2 2 111 -105 2 1657 305 370 74 14 chr4 140631969 140632005 -14998115 + RSINE1 SINE B4 3 157 -8 2 1657 201 39 0 0 chr4 140632560 140632586 -14997534 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 1657 493 298 83 40 chr4 140632975 140633251 -14996869 + B4A SINE B4 4 291 -1 2 1657 21 0 0 0 chr4 140633307 140633328 -14996792 + AT_rich Low_complexity Low_complexity 1 21 0 2 1657 1241 155 10 152 chr4 140634669 140635012 -14995108 - ORR1C2 LTR MaLR -6 373 85 2 1657 866 271 73 14 chr4 140635029 140635317 -14994803 + RMER5 LTR ERV1 74 378 -156 2 1657 1206 56 0 0 chr4 140635347 140635489 -14994631 - B1_Mus2 SINE Alu -5 142 1 2 1657 1160 81 0 0 chr4 140635494 140635642 -14994478 - B1_Mus1 SINE Alu 0 148 1 2 1657 466 251 37 63 chr4 140635644 140635674 -14994446 + RMER5 LTR ERV1 349 376 -158 2 1657 2565 125 8 41 chr4 140635674 140636065 -14994055 + ORR1C1 LTR MaLR 1 378 0 2 1657 466 251 37 63 chr4 140636065 140636225 -14993895 + RMER5 LTR ERV1 377 534 0 2 1657 1248 111 21 16 chr4 140636268 140636461 -14993659 + B2_Mm2 SINE B2 2 195 0 2 1657 238 328 0 64 chr4 140636471 140636590 -14993530 + B1F SINE Alu 1 105 -15 2 1657 1316 20 0 0 chr4 140636751 140636898 -14993222 + B1_Mus2 SINE Alu 1 147 0 2 1657 285 239 0 53 chr4 140636922 140636934 -14993186 + B4A SINE B4 78 85 -207 2 1657 409 178 17 3 chr4 140636934 140637024 -14993096 + B1_Mur4 SINE Alu 2 95 -22 2 1657 539 256 128 0 chr4 140637254 140637410 -14992710 - B3 SINE B2 -8 208 33 2 1657 999 190 65 66 chr4 140637489 140637813 -14992307 + RMER6B LTR ERVK 2 374 -87 2 1657 1348 100 26 0 chr4 140637819 140638009 -14992111 - B2_Mm2 SINE B2 0 195 1 2 1657 357 141 14 14 chr4 140638237 140638309 -14991811 + B1_Mur2 SINE Alu 78 149 0 2 1657 248 191 159 0 chr4 140638370 140638433 -14991687 - PB1D10 SINE Alu -10 107 35 2 1657 184 256 0 0 chr4 140638527 140638570 -14991550 - L2b LINE L2 -20 3355 3313 2 1657 434 271 71 7 chr4 140638773 140638914 -14991206 - ID_B1 SINE B4 -12 212 63 2 1657 1044 75 45 0 chr4 140638988 140639121 -14990999 - B1_Mus2 SINE Alu -7 140 2 2 1657 243 61 0 0 chr4 140639187 140639220 -14990900 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1657 678 174 16 8 chr4 140639226 140639348 -14990772 - B1_Mur3 SINE Alu -8 141 19 2 1657 1212 191 9 9 chr4 140639356 140639568 -14990552 - B3 SINE B2 -3 213 2 3 1657 298 322 51 132 chr4 140639568 140639634 -14990486 - B4 SINE B4 -196 96 38 3 1657 420 329 77 8 chr4 140639754 140639972 -14990148 - L1MB3 LINE L1 -150 6033 5809 3 1657 414 0 0 0 chr4 140639972 140640018 -14990102 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 207 1189 84 66 0 chr4 140640106 140640273 -14989847 - B2_Mm1t SINE B2 -14 179 2 3 1658 596 140 27 45 chr4 140640487 140640599 -14989521 + B3 SINE B2 1 110 -106 3 1658 569 165 18 44 chr4 140640561 140640675 -14989445 - B1_Mur1 SINE Alu -36 113 3 3 1658 386 262 30 60 chr4 140640675 140640691 -14989429 - B4 SINE B4 -90 198 73 3 1658 1149 111 28 0 chr4 140641656 140641836 -14988284 - B2_Mm2 SINE B2 0 195 11 3 1658 272 269 77 103 chr4 140641843 140642038 -14988082 + L1MB7 LINE L1 4942 5131 -1015 3 1658 239 326 86 7 chr4 140642040 140642066 -14988054 + B1_Mur4 SINE Alu 1 150 0 3 1658 469 283 0 0 chr4 140642066 140642179 -14987941 + ID_B1 SINE B4 112 224 0 3 1658 1063 90 7 14 chr4 140642333 140642479 -14987641 + B1_Mur3 SINE Alu 5 149 0 3 1658 293 158 18 0 chr4 140642629 140642686 -14987434 + B3 SINE B2 2 59 -157 3 1658 471 18 0 0 chr4 140642686 140642742 -14987378 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1658 2477 188 39 49 chr4 140642744 140643254 -14986866 + RLTR19C LTR ERVK 2 506 0 3 1658 320 319 109 19 chr4 140643358 140643550 -14986570 + L1MB7 LINE L1 5920 6130 -44 3 1658 767 50 0 40 chr4 140643550 140643675 -14986445 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 3 1658 283 319 109 19 chr4 140643675 140643693 -14986427 + L1MB7 LINE L1 6131 6148 -26 3 1658 1071 101 7 7 chr4 140643825 140643974 -14986146 + B1_Mur4 SINE Alu 2 150 0 3 1658 247 347 88 28 chr4 140644719 140644900 -14985220 + MIRb SINE MIR 2 193 -75 3 1658 307 219 0 64 chr4 140645118 140645196 -14984924 + B4 SINE B4 2 74 -218 3 1658 348 24 0 0 chr4 140645223 140645264 -14984856 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1658 600 210 60 20 chr4 140645273 140645425 -14984695 + B3 SINE B2 10 166 -50 3 1658 264 77 0 0 chr4 140645425 140645464 -14984656 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1658 421 256 70 75 chr4 140645464 140645497 -14984623 + B2_Mm2 SINE B2 164 194 -1 3 1658 284 280 109 23 chr4 140645504 140645632 -14984488 + B4 SINE B4 83 221 -71 3 1658 228 35 0 0 chr4 140645672 140645701 -14984419 + (TCTCTG)n Simple_repeat Simple_repeat 1 29 0 3 1658 390 101 0 0 chr4 140645705 140645774 -14984346 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1658 667 210 168 0 chr4 140645774 140645941 -14984179 - ID_B1 SINE B4 -29 195 1 3 1658 874 139 0 27 chr4 140646572 140646720 -14983400 - B1_Mur4 SINE Alu 0 150 7 3 1658 238 326 0 129 chr4 140646621 140646776 -14983344 - MT2B LTR ERVL -345 256 122 3 1658 950 180 0 0 chr4 140647276 140647426 -14982694 + B1_Mur4 SINE Alu 1 150 0 3 1658 1332 107 37 16 chr4 140647430 140647620 -14982500 + B2_Mm2 SINE B2 2 195 0 3 1658 401 264 47 0 chr4 140647645 140647751 -14982369 + PB1D10 SINE Alu 6 116 -1 3 1658 270 282 0 60 chr4 140648275 140648381 -14981739 - ID2 SINE ID -53 99 2 3 1658 213 319 10 50 chr4 140648474 140648573 -14981547 + L2a LINE L2 3327 3421 -5 3 1658 1097 73 7 0 chr4 140648614 140648750 -14981370 + B1_Mus2 SINE Alu 1 137 -10 3 1658 396 0 0 0 chr4 140648750 140648794 -14981326 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1658 473 291 8 8 chr4 140648811 140648939 -14981181 + ID_B1 SINE B4 84 211 -13 3 1658 390 21 0 0 chr4 140648941 140648988 -14981132 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1658 360 0 0 0 chr4 140649158 140649198 -14980922 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1658 390 69 0 0 chr4 140649198 140649256 -14980864 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1658 1088 127 8 21 chr4 140649270 140649573 -14980547 - RLTR9F LTR ERVK 0 403 1 3 1658 555 173 76 9 chr4 140649574 140649679 -14980441 - B1_Mur2 SINE Alu -37 112 1 3 1658 410 267 111 8 chr4 140649577 140649694 -14980426 - B4 SINE B4 -94 198 70 3 1658 376 266 44 0 chr4 140649718 140649831 -14980289 + Lx8 LINE L1 7147 7264 -209 3 1658 1304 52 0 6 chr4 140649914 140650088 -14980032 + B2_Mm2 SINE B2 19 191 -4 3 1658 385 259 62 9 chr4 140650301 140650414 -14979706 + PB1D7 SINE Alu 2 120 0 3 1658 194 284 62 97 chr4 140650426 140650539 -14979581 + MIRc SINE MIR 12 120 -148 3 1658 413 176 27 13 chr4 140650594 140650669 -14979451 - ID4_ SINE ID -6 77 2 3 1658 321 26 0 0 chr4 140650676 140650714 -14979406 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1658 419 250 102 0 chr4 140650735 140650843 -14979277 - ID_B1 SINE B4 -15 209 91 3 1658 220 271 0 0 chr4 140651525 140651584 -14978536 + (TCTG)n Simple_repeat Simple_repeat 1 59 0 3 1658 391 87 0 92 chr4 140651586 140651662 -14978458 - B1_Mur4 SINE Alu -80 70 2 3 1658 1384 94 10 10 chr4 140651683 140651876 -14978244 - B2_Mm1t SINE B2 0 193 1 3 1658 865 27 0 0 chr4 140651884 140651996 -14978124 - B1_Mus1 SINE Alu -1 147 36 3 1658 292 176 13 93 chr4 140651932 140652007 -14978113 - RLTR25A LTR ERVK -531 572 504 3 1658 359 317 25 101 chr4 140652074 140652100 -14978020 + B4 SINE B4 70 215 -77 3 1658 696 191 0 8 chr4 140652100 140652232 -14977888 + B1_Mur4 SINE Alu 9 139 -11 3 1658 651 227 124 0 chr4 140652248 140652433 -14977687 + B3 SINE B2 7 214 -2 3 1658 1487 58 21 5 chr4 140652547 140652737 -14977383 - B2_Mm2 SINE B2 -1 194 2 3 1658 180 0 0 0 chr4 140653088 140653108 -14977012 + (G)n Simple_repeat Simple_repeat 1 20 0 3 1658 374 172 181 25 chr4 140653159 140653292 -14976828 + B4 SINE B4 67 230 -62 3 1658 697 226 6 36 chr4 140653293 140653458 -14976662 + RSINE1 SINE B4 5 164 -1 3 1658 347 287 32 73 chr4 140653486 140653610 -14976510 + RSINE1 SINE B4 4 122 -43 3 1658 215 207 0 49 chr4 140653975 140654036 -14976084 + G-rich Low_complexity Low_complexity 6 63 0 3 1658 24 0 0 0 chr4 140654114 140654138 -14975982 + AT_rich Low_complexity Low_complexity 1 24 0 3 1658 311 0 26 0 chr4 140654149 140654188 -14975932 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1658 1199 36 0 0 chr4 140654188 140654326 -14975794 - B1_Mus2 SINE Alu -8 139 2 3 1658 609 14 0 0 chr4 140654337 140654407 -14975713 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 3 1658 933 90 15 29 chr4 140654407 140654544 -14975576 - B1_Mus1 SINE Alu -13 135 1 3 1658 352 173 173 0 chr4 140654622 140654697 -14975423 - RSINE1 SINE B4 -68 97 10 3 1658 326 321 36 14 chr4 140654705 140654844 -14975276 - ID_B1 SINE B4 0 224 83 3 1658 349 41 0 3 chr4 140655418 140655480 -14974640 - B1_Mm SINE Alu -6 144 53 3 1658 1414 75 43 0 chr4 140655498 140655684 -14974436 - B2_Mm2 SINE B2 0 195 2 3 1658 844 228 6 11 chr4 140655766 140655948 -14974172 - B3 SINE B2 -4 212 32 3 1658 542 264 44 108 chr4 140655946 140656150 -14973970 + ID_B1 SINE B4 6 196 -28 3 1658 547 291 14 0 chr4 140656182 140656323 -14973797 + RSINE1 SINE B4 2 144 -21 3 1658 336 224 87 48 chr4 140656369 140656472 -14973648 + B1_Mur1 SINE Alu 1 107 -42 3 1658 220 274 0 0 chr4 140656824 140656875 -14973245 + L2 LINE L2 2329 2379 -1040 3 1658 1228 62 0 0 chr4 140656882 140657028 -14973092 + B1_Mm SINE Alu 2 147 0 3 1658 333 0 0 0 chr4 140657028 140657065 -14973055 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1658 221 246 14 28 chr4 140657207 140657278 -14972842 + GA-rich Low_complexity Low_complexity 1 70 0 3 1658 396 273 39 65 chr4 140657877 140658030 -14972090 - B3 SINE B2 -2 214 66 3 1658 1104 96 101 6 chr4 140658160 140658328 -14971792 + B2_Mm2 SINE B2 1 184 -11 3 1658 1100 94 0 0 chr4 140658328 140658465 -14971655 + B1_Mus1 SINE Alu 1 138 -10 3 1658 235 231 46 0 chr4 140659578 140659643 -14970477 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 3 1658 712 115 172 0 chr4 140661151 140661273 -14968847 - B1_Mus1 SINE Alu -1 147 5 3 1658 317 352 41 0 chr4 140661297 140661442 -14968678 + MIR SINE MIR 75 225 -37 3 1658 204 341 45 0 chr4 140661631 140661719 -14968401 - L2c LINE L2 -230 3157 3066 3 1658 951 133 28 0 chr4 140662273 140662416 -14967704 + B1_Mus1 SINE Alu 2 148 0 3 1658 345 307 226 17 chr4 140663436 140663671 -14966449 - MLT1K LTR MaLR -7 588 305 3 1658 1366 236 54 47 chr4 140663933 140664381 -14965739 - L1_Rod LINE L1 -300 5547 5097 3 1658 739 217 35 7 chr4 140664801 140664945 -14965175 + B1_Mur1 SINE Alu 2 149 0 3 1658 657 281 46 5 chr4 140664961 140665158 -14964962 - ID_B1 SINE B4 -17 207 3 3 1658 297 211 38 38 chr4 140665390 140665469 -14964651 + B3 SINE B2 46 124 -92 3 1658 21 45 0 22 chr4 140665511 140665536 -14964584 + AT_rich Low_complexity Low_complexity 1 25 0 3 1658 1184 82 0 0 chr4 140665536 140665683 -14964437 - B1_Mus2 SINE Alu 0 147 1 3 1658 21 45 0 22 chr4 140665683 140665703 -14964417 + AT_rich Low_complexity Low_complexity 1 20 0 3 1658 474 235 109 0 chr4 140665719 140665838 -14964282 + ID_B1 SINE B4 86 217 -7 3 1658 448 186 68 122 chr4 140665895 140665914 -14964206 - B2_Mm2 SINE B2 -55 140 126 3 1658 180 0 0 0 chr4 140665914 140665934 -14964186 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1658 594 181 79 0 chr4 140665934 140666061 -14964059 - B3A SINE B2 -60 138 2 3 1658 288 0 0 0 chr4 140666092 140666124 -14963996 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1658 631 259 81 24 chr4 140666615 140666825 -14963295 - ID_B1 SINE B4 -1 223 2 4 1658 216 163 0 0 chr4 140669220 140669263 -14960857 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 4 1658 203 194 0 0 chr4 140669579 140669615 -14960505 + A-rich Low_complexity Low_complexity 1 36 0 4 1658 203 184 0 0 chr4 140671186 140671224 -14958896 + A-rich Low_complexity Low_complexity 1 38 0 4 1658 510 263 134 23 chr4 140671846 140672107 -14958013 - B4A SINE B4 0 292 3 4 1658 289 160 241 19 chr4 140672608 140672716 -14957404 + B1F1 SINE Alu 11 142 -7 4 1658 846 95 79 0 chr4 140672719 140672845 -14957275 + B1_Mur3 SINE Alu 1 136 -13 4 1658 251 224 184 0 chr4 140672975 140673051 -14957069 + PB1D7 SINE Alu 23 112 -8 4 1658 926 95 34 27 chr4 140673346 140673529 -14956591 - B2_Mm2 SINE B2 -3 213 2 4 1658 829 149 13 13 chr4 140673810 140673960 -14956160 - B1_Mur4 SINE Alu 0 150 1 4 1658 204 125 0 0 chr4 140674003 140674035 -14956085 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1658 579 96 0 0 chr4 140677431 140677514 -14952606 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 4 1658 440 273 57 23 chr4 140678008 140678184 -14951936 - B3A SINE B2 -16 182 1 4 1658 958 55 70 0 chr4 140678246 140678374 -14951746 - B1_Mus1 SINE Alu -11 137 1 4 1658 2403 162 127 8 chr4 140679151 140679649 -14950471 + RLTR31_Mm LTR ERVK 5 561 0 4 1658 419 282 221 0 chr4 140680469 140680632 -14949488 + B3 SINE B2 2 200 -16 4 1658 355 206 0 56 chr4 140680684 140680756 -14949364 + B1_Mur2 SINE Alu 76 143 -6 4 1658 363 94 25 0 chr4 140680940 140681014 -14949106 - B1_Mus2 SINE Alu -1 146 43 4 1658 544 255 27 7 chr4 140681134 140681280 -14948840 + B1F SINE Alu 1 149 0 4 1658 310 238 358 23 chr4 140681293 140681466 -14948654 + B4A SINE B4 2 231 -61 4 1658 561 267 56 13 chr4 140681585 140681747 -14948373 + B3A SINE B2 16 182 -34 4 1658 517 162 329 24 chr4 140681747 140681911 -14948209 + B3 SINE B2 1 214 -2 4 1658 418 328 52 67 chr4 140681911 140681941 -14948179 + B3 SINE B2 183 205 -11 4 1658 1433 77 0 5 chr4 140682637 140682832 -14947288 + B2_Mm2 SINE B2 1 194 -1 4 1658 538 180 20 0 chr4 140682867 140682967 -14947153 + B1_Mur1 SINE Alu 22 123 -26 4 1658 248 265 59 0 chr4 140683118 140683186 -14946934 + B1F SINE Alu 26 97 -52 4 1658 1140 62 12 12 chr4 140683530 140683694 -14946426 - B2_Mm2 SINE B2 -26 169 6 4 1658 1163 48 0 7 chr4 140683741 140683889 -14946231 + B1_Mus2 SINE Alu 1 147 0 4 1658 624 219 192 17 chr4 140684176 140684348 -14945772 - B3 SINE B2 0 216 15 4 1658 305 250 128 21 chr4 140684428 140684522 -14945598 + B1_Mur2 SINE Alu 38 141 -8 4 1658 272 27 0 26 chr4 140684525 140684563 -14945557 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1658 608 242 23 0 chr4 140684572 140684704 -14945416 + B1_Mur2 SINE Alu 7 141 -8 4 1658 795 0 0 143 chr4 140684705 140684915 -14945205 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1658 301 25 190 0 chr4 140684919 140684991 -14945129 + GA-rich Low_complexity Low_complexity 3 89 0 4 1658 964 17 0 101 chr4 140684991 140685189 -14944931 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 4 1658 191 236 55 0 chr4 140685529 140685584 -14944536 + L2 LINE L2 2190 2247 -1172 4 1658 326 180 74 61 chr4 140685599 140685720 -14944400 - B1_Mur2 SINE Alu -34 116 3 4 1658 403 175 25 0 chr4 140685772 140685852 -14944268 - PB1D7 SINE Alu -5 115 34 4 1658 191 121 0 57 chr4 140686030 140686065 -14944055 - L3 LINE CR1 -4430 59 27 4 1658 1383 43 26 16 chr4 140686068 140686097 -14944023 - B2_Mm1a SINE B2 0 193 161 4 1658 351 0 0 0 chr4 140686097 140686136 -14943984 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 1658 1383 43 26 16 chr4 140686136 140686297 -14943823 - B2_Mm1a SINE B2 -33 160 1 4 1658 593 131 40 0 chr4 140686643 140686742 -14943378 - B1_Mur2 SINE Alu 0 149 47 4 1658 192 284 132 38 chr4 140687024 140687130 -14942990 - MIRb SINE MIR -113 155 40 4 1658 294 220 0 0 chr4 140688305 140688364 -14941756 + PB1D10 SINE Alu 39 97 -20 4 1658 1346 78 10 10 chr4 140688902 140689095 -14941025 + B2_Mm1t SINE B2 1 193 0 4 1658 1488 32 21 11 chr4 140689598 140689789 -14940331 + B2_Mm1a SINE B2 1 193 0 4 1658 1084 7 0 7 chr4 140689800 140689937 -14940183 + B1_Mus2 SINE Alu 12 147 0 4 1658 415 176 47 47 chr4 140690936 140691043 -14939077 - PB1D10 SINE Alu -10 107 1 4 1658 252 203 31 15 chr4 140691338 140691403 -14938717 + ID2 SINE ID 2 67 -16 4 1658 327 191 183 43 chr4 140691437 140691530 -14938590 + PB1D10 SINE Alu 6 111 -6 4 1658 1152 55 7 0 chr4 140691540 140691685 -14938435 + B1_Mm SINE Alu 2 147 0 4 1658 219 146 0 0 chr4 140691685 140691726 -14938394 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1658 749 164 94 0 chr4 140691953 140692081 -14938039 + B1_Mus2 SINE Alu 1 140 -7 4 1658 290 239 62 60 chr4 140692918 140693039 -14937081 + B1F SINE Alu 2 127 0 4 1658 372 208 0 0 chr4 140693158 140693230 -14936890 + ORR1D1 LTR MaLR 1 72 -302 4 1658 242 259 0 33 chr4 140693229 140693289 -14936831 + ORR1D1 LTR MaLR 325 382 -2 4 1658 210 105 0 0 chr4 140693300 140693338 -14936782 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1658 573 259 30 6 chr4 140693397 140693564 -14936556 + B3A SINE B2 1 171 -27 4 1658 463 213 93 0 chr4 140693592 140693700 -14936420 + B1_Mur3 SINE Alu 3 120 -29 4 1658 239 287 98 8 chr4 140693700 140693715 -14936405 + ID_B1 SINE B4 84 217 -7 4 1658 1434 68 5 0 chr4 140693919 140694111 -14936009 - B2_Mm1a SINE B2 0 193 1 4 1658 893 158 14 0 chr4 140694209 140694355 -14935765 + B1_Mur2 SINE Alu 2 149 0 4 1658 453 81 0 0 chr4 140694656 140694718 -14935402 + (CAGCC)n Simple_repeat Simple_repeat 2 63 0 4 1658 1392 32 20 65 chr4 140696124 140696324 -14933796 - B2_Mm1a SINE B2 -1 192 2 4 1658 1118 62 0 0 chr4 140696384 140696530 -14933590 + B1_Mus2 SINE Alu 2 147 0 4 1658 951 102 99 33 chr4 140696545 140696727 -14933393 + B2_Mm2 SINE B2 2 195 0 4 1658 510 104 330 0 chr4 140696806 140696912 -14933208 + B1_Mur4 SINE Alu 3 143 -7 4 1658 770 46 74 0 chr4 140697029 140697137 -14932983 + B1_Mus1 SINE Alu 20 135 -13 4 1658 536 246 0 32 chr4 140697611 140697737 -14932383 - B1_Mur4 SINE Alu -17 133 12 4 1658 450 0 0 0 chr4 140697919 140697969 -14932151 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1658 289 295 67 0 chr4 140698094 140698199 -14931921 - B4A SINE B4 -167 125 14 4 1658 181 299 60 0 chr4 140698521 140698588 -14931532 + MIR3 SINE MIR 85 155 -53 4 1658 868 132 35 0 chr4 140698981 140699125 -14930995 + B1_Mur4 SINE Alu 2 150 0 4 1658 448 174 331 7 chr4 140699265 140699404 -14930716 - B2_Mm2 SINE B2 -9 186 3 4 1658 201 196 0 0 chr4 140699410 140699456 -14930664 + T-rich Low_complexity Low_complexity 4 49 0 4 1658 797 127 7 7 chr4 140699456 140699591 -14930529 - B1_Mur4 SINE Alu 0 150 16 4 1658 227 274 0 0 chr4 140699593 140699644 -14930476 - ZP3AR Satellite Satellite -119 93 43 4 1658 446 260 60 73 chr4 140700158 140700468 -14929652 + B4 SINE B4 1 292 0 4 1658 451 200 114 35 chr4 140700649 140700763 -14929357 + RSINE1 SINE B4 5 127 -38 4 1658 250 315 45 0 chr4 140700825 140700914 -14929206 + PB1D7 SINE Alu 21 113 -7 4 1658 635 236 0 27 chr4 140700926 140701074 -14929046 + B1_Mur1 SINE Alu 2 145 -4 4 1658 184 175 73 24 chr4 140701169 140701210 -14928910 + L2c LINE L2 3328 3370 -17 4 1658 184 175 73 24 chr4 140701209 140701250 -14928870 + L2c LINE L2 3328 3370 -17 4 1658 184 175 73 24 chr4 140701249 140701290 -14928830 + L2c LINE L2 3328 3370 -17 4 1658 184 175 73 24 chr4 140701329 140701370 -14928750 + L2c LINE L2 3328 3370 -17 4 1658 184 175 73 24 chr4 140701369 140701410 -14928710 + L2c LINE L2 3328 3370 -17 4 1658 32 0 0 0 chr4 140701535 140701567 -14928553 + AT_rich Low_complexity Low_complexity 1 32 0 4 1658 1211 34 0 0 chr4 140701567 140701714 -14928406 - B1_Mus2 SINE Alu 0 147 1 4 1658 692 181 0 23 chr4 140701900 140702030 -14928090 - B1_Mus2 SINE Alu -11 136 10 4 1658 21 36 0 0 chr4 140702049 140702077 -14928043 + AT_rich Low_complexity Low_complexity 1 28 0 4 1658 472 247 71 7 chr4 140702080 140702235 -14927885 - B3A SINE B2 0 198 34 4 1658 1115 62 7 0 chr4 140702249 140702394 -14927726 - B1_Mus2 SINE Alu 0 147 2 4 1658 752 180 72 44 chr4 140702468 140702648 -14927472 + B3 SINE B2 2 186 -30 4 1658 526 287 6 37 chr4 140702662 140702825 -14927295 - RSINE1 SINE B4 -4 161 4 4 1658 581 157 46 9 chr4 140702841 140702950 -14927170 - PB1D9 SINE Alu -5 115 3 4 1658 253 333 33 0 chr4 140703040 140703130 -14926990 - PB1 SINE Alu -29 98 6 4 1658 21 0 0 0 chr4 140703457 140703478 -14926642 + AT_rich Low_complexity Low_complexity 1 21 0 4 1658 225 211 0 0 chr4 140703860 140703917 -14926203 + (CGG)n Simple_repeat Simple_repeat 3 59 0 4 1658 594 210 169 11 chr4 140705914 140706097 -14924023 - B3 SINE B2 -4 212 1 4 1658 264 59 0 0 chr4 140706136 140706170 -14923950 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1658 478 236 121 8 chr4 140706216 140706340 -14923780 - B3A SINE B2 -59 139 2 4 1658 828 184 7 7 chr4 140706383 140706531 -14923589 - B1_Mus1 SINE Alu 0 148 1 4 1658 245 263 73 10 chr4 140706747 140706843 -14923277 + MIRc SINE MIR 152 253 -15 4 1658 801 182 7 0 chr4 140706846 140706994 -14923126 + B1_Mur2 SINE Alu 1 149 0 4 1658 1205 106 32 11 chr4 140707269 140707459 -14922661 - B2_Mm2 SINE B2 0 195 2 5 1658 601 13 13 13 chr4 140707473 140707552 -14922568 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 5 1658 650 130 209 0 chr4 140707552 140707667 -14922453 - B1_Mur4 SINE Alu -11 139 1 5 1658 365 196 18 64 chr4 140707673 140707782 -14922338 - B3 SINE B2 0 216 113 5 1658 540 0 0 0 chr4 140707788 140707848 -14922272 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1658 235 200 91 0 chr4 140707928 140707983 -14922137 - B4A SINE B4 -148 144 85 5 1658 333 68 0 0 chr4 140708273 140708317 -14921803 + (TGG)n Simple_repeat Simple_repeat 3 46 0 5 1658 605 215 128 51 chr4 140708388 140708584 -14921536 - B3 SINE B2 -4 212 2 5 1658 318 342 24 32 chr4 140708724 140708848 -14921272 - B1F1 SINE Alu -24 125 3 5 1658 453 330 22 32 chr4 140708848 140708927 -14921193 - ID SINE ID -145 79 3 5 1658 21 0 0 0 chr4 140708973 140708994 -14921126 + AT_rich Low_complexity Low_complexity 1 21 0 5 1658 22 35 0 0 chr4 140709167 140709196 -14920924 + AT_rich Low_complexity Low_complexity 1 29 0 5 1658 1145 61 0 0 chr4 140709305 140709452 -14920668 - B1_Mus1 SINE Alu 0 148 2 5 1658 606 28 0 0 chr4 140709482 140709554 -14920566 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1658 282 116 0 0 chr4 140709554 140709596 -14920524 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1658 601 277 75 0 chr4 140709601 140709789 -14920331 - B4A SINE B4 -88 204 3 5 1658 307 282 126 83 chr4 140709873 140710172 -14919948 + L1MB1 LINE L1 5827 6135 -48 5 1658 307 288 0 40 chr4 140710340 140710416 -14919704 + ID4_ SINE ID 2 74 -9 5 1658 434 239 212 12 chr4 140710460 140710625 -14919495 + B3A SINE B2 1 198 0 5 1658 471 159 12 24 chr4 140710716 140710800 -14919320 - B1F2 SINE Alu -3 146 64 5 1658 598 219 8 0 chr4 140710806 140710934 -14919186 + B1_Mur4 SINE Alu 11 139 -11 5 1658 242 326 11 32 chr4 140711263 140711291 -14918829 - BC1_Mm scRNA scRNA -51 101 9 5 1658 243 313 0 0 chr4 140711291 140711358 -14918762 - tRNA-Ala-GCA tRNA tRNA -6 69 3 5 1658 1113 42 28 0 chr4 140711611 140711754 -14918366 + B1_Mus1 SINE Alu 2 148 0 5 1658 642 141 39 15 chr4 140711826 140711956 -14918164 + B1_Mus2 SINE Alu 15 147 0 5 1658 355 263 33 25 chr4 140712278 140712399 -14917721 - RSINE1 SINE B4 -29 136 15 5 1658 368 231 171 0 chr4 140712564 140712681 -14917439 - B1F SINE Alu -1 148 12 5 1658 487 205 133 9 chr4 140712713 140712826 -14917294 - B1_Mur4 SINE Alu 0 150 24 5 1658 378 281 48 16 chr4 140713325 140713466 -14916654 - B1F SINE Alu 0 149 5 5 1658 438 238 44 73 chr4 140713485 140713621 -14916499 - MER21B LTR ERV1 -119 744 613 5 1658 231 229 138 51 chr4 140713785 140713923 -14916197 + B4A SINE B4 143 292 0 5 1658 540 291 7 7 chr4 140714057 140714199 -14915921 - ID_B1 SINE B4 0 224 83 5 1658 183 42 0 0 chr4 140714202 140714226 -14915894 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1658 1010 89 0 0 chr4 140714226 140714361 -14915759 - B1_Mus2 SINE Alu -10 137 3 5 1658 910 239 148 4 chr4 140714382 140714626 -14915494 - MER21B LTR ERV1 -584 279 1 5 1658 503 244 8 0 chr4 140714717 140714836 -14915284 + PB1D9 SINE Alu 1 120 0 5 1658 1044 196 34 0 chr4 140714840 140715044 -14915076 + B3 SINE B2 1 211 -5 5 1658 1204 41 0 0 chr4 140716006 140716153 -14913967 + B1_Mus2 SINE Alu 1 147 0 5 1658 254 293 24 0 chr4 140716256 140716338 -14913782 + PB1D10 SINE Alu 34 117 0 5 1658 379 240 31 10 chr4 140716611 140716708 -14913412 + PB1D10 SINE Alu 4 102 -15 5 1658 245 315 68 0 chr4 140716733 140716806 -14913314 + ID4_ SINE ID 3 80 -3 5 1658 789 234 17 6 chr4 140717101 140717277 -14912843 + B3 SINE B2 1 178 -38 5 1658 328 240 38 2 chr4 140717370 140717472 -14912648 + B1F1 SINE Alu 20 117 0 5 1658 1061 75 14 0 chr4 140718096 140718243 -14911877 - B1_Mur4 SINE Alu -1 149 1 5 1658 338 285 130 14 chr4 140718331 140718477 -14911643 - RSINE1 SINE B4 -2 163 1 5 1658 402 173 0 0 chr4 140718594 140718669 -14911451 + (TGG)n Simple_repeat Simple_repeat 1 75 0 5 1658 470 279 24 75 chr4 140718953 140719160 -14910960 - RSINE1 SINE B4 -18 274 8 5 1658 249 108 0 0 chr4 140719233 140719270 -14910850 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 5 1658 1192 34 0 0 chr4 140720180 140720327 -14909793 - B1_Mus2 SINE Alu 0 147 1 5 1658 459 250 0 11 chr4 140720595 140720688 -14909432 + PB1D7 SINE Alu 1 92 -28 5 1658 574 110 10 39 chr4 140720783 140720887 -14909233 + B1_Mur4 SINE Alu 47 147 -3 5 1658 235 243 57 0 chr4 140720927 140720997 -14909123 + B3A SINE B2 110 183 -15 5 1658 378 242 92 75 chr4 140720958 140721132 -14908988 + B4A SINE B4 48 224 -68 5 1658 942 32 8 0 chr4 140721009 140721134 -14908986 + B1_Mus2 SINE Alu 22 147 0 5 1658 180 97 0 0 chr4 140721134 140721165 -14908955 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1658 968 197 15 10 chr4 140721218 140721423 -14908697 + B3 SINE B2 1 206 -10 5 1658 534 151 70 78 chr4 140721485 140721600 -14908520 + B1_Mur4 SINE Alu 35 148 -2 5 1658 593 212 29 14 chr4 140721967 140722106 -14908014 - B1_Mur1 SINE Alu -5 144 4 5 1658 228 268 0 18 chr4 140722790 140722847 -14907273 - PB1D10 SINE Alu -41 76 21 5 1658 638 210 16 31 chr4 140723037 140723165 -14906955 - B1_Mur1 SINE Alu -1 148 23 5 1658 680 253 110 5 chr4 140723193 140723384 -14906736 - B3 SINE B2 -3 213 3 5 1658 225 288 51 101 chr4 140723828 140723911 -14906209 - RLTR10A LTR ERVK -191 220 145 5 1658 180 0 0 0 chr4 140723911 140723931 -14906189 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1658 225 288 51 101 chr4 140723931 140724025 -14906095 - RLTR10A LTR ERVK -267 144 52 5 1658 666 217 45 0 chr4 140723964 140724121 -14905999 - B3A SINE B2 -18 180 17 5 1658 1439 80 11 0 chr4 140724161 140724349 -14905771 - B2_Mm1t SINE B2 -2 191 2 5 1658 751 179 22 29 chr4 140724467 140724605 -14905515 + B1_Mur4 SINE Alu 14 150 0 5 1658 773 209 0 8 chr4 140724732 140724862 -14905258 - B1_Mm SINE Alu -16 131 3 5 1658 285 296 0 53 chr4 140724798 140724873 -14905247 - B4A SINE B4 -142 150 80 5 1658 278 255 179 54 chr4 140724873 140724985 -14905135 - PB1D10 SINE Alu -7 142 17 5 1658 643 285 60 4 chr4 140724992 140725242 -14904878 - L1MC1 LINE L1 -18 6315 6052 5 1658 398 262 9 27 chr4 140725259 140725369 -14904751 - PB1D9 SINE Alu -1 119 12 5 1658 213 65 0 0 chr4 140725418 140725449 -14904671 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1658 805 242 50 6 chr4 140725449 140725628 -14904492 - B3 SINE B2 -29 187 1 5 1658 940 237 16 16 chr4 140725654 140725843 -14904277 - B3 SINE B2 -25 191 3 5 1658 1432 98 5 0 chr4 140726185 140726378 -14903742 - B2_Mm2 SINE B2 0 195 2 5 1658 1155 82 0 0 chr4 140726498 140726645 -14903475 + B1_Mus1 SINE Alu 2 148 0 5 1658 198 0 0 0 chr4 140726645 140726667 -14903453 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1658 224 200 39 39 chr4 140727107 140727159 -14902961 - B1F1 SINE Alu -92 57 6 5 1658 274 311 152 22 chr4 140727190 140727328 -14902792 - MLT1F1 LTR MaLR 0 569 414 5 1658 229 231 145 57 chr4 140727401 140727525 -14902595 - MLT1F1 LTR MaLR -355 205 71 5 1658 530 182 29 117 chr4 140727790 140727927 -14902193 + RSINE1 SINE B4 3 127 -38 5 1658 256 155 48 65 chr4 140728109 140728171 -14901949 + PB1 SINE Alu 65 125 -2 5 1658 330 208 63 25 chr4 140728369 140728448 -14901672 - ID4 SINE ID 0 83 2 5 1658 270 0 0 0 chr4 140728646 140728676 -14901444 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1658 935 73 105 0 chr4 140728788 140728912 -14901208 + B1_Mus1 SINE Alu 3 139 -9 5 1658 552 30 0 0 chr4 140728912 140728978 -14901142 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 5 1658 1179 101 34 0 chr4 140728978 140729156 -14900964 + B2_Mm2 SINE B2 12 195 0 5 1658 710 228 93 13 chr4 140729176 140729327 -14900793 + RSINE1 SINE B4 3 165 0 5 1658 183 186 0 0 chr4 140729331 140729374 -14900746 + GA-rich Low_complexity Low_complexity 1 43 0 5 1658 1018 116 0 27 chr4 140729386 140729536 -14900584 - B1_Mus1 SINE Alu -2 146 1 5 1658 351 224 191 8 chr4 140729858 140729873 -14900247 + B1F SINE Alu 1 148 0 5 1658 419 227 91 0 chr4 140729873 140729983 -14900137 + ID_B1 SINE B4 105 224 0 5 1658 184 290 101 0 chr4 140730429 140730498 -14899622 + L2c LINE L2 3270 3345 -42 5 1658 449 321 67 0 chr4 140731150 140731284 -14898836 + RSINE1 SINE B4 14 156 -9 5 1658 180 0 0 0 chr4 140731290 140731310 -14898810 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1658 1846 18 36 0 chr4 140731379 140731598 -14898522 + L1Md_F2 LINE L1 6356 6582 0 5 1658 329 235 18 101 chr4 140732457 140732566 -14897554 - B1F2 SINE Alu 0 149 50 5 1658 273 235 169 24 chr4 140732978 140733061 -14897059 - RSINE1 SINE B4 -54 111 17 5 1658 21 0 0 0 chr4 140733437 140733458 -14896662 + AT_rich Low_complexity Low_complexity 1 21 0 5 1658 978 93 0 0 chr4 140733531 140733692 -14896428 + (TTCC)n Simple_repeat Simple_repeat 2 162 0 5 1658 1188 141 17 0 chr4 140733695 140733872 -14896248 - B2_Mm2 SINE B2 -14 181 2 5 1658 1043 175 33 0 chr4 140733950 140734133 -14895987 - B3 SINE B2 -3 213 25 5 1658 843 162 87 6 chr4 140734134 140734295 -14895825 - B2_Mm2 SINE B2 -21 174 1 6 1658 672 232 28 7 chr4 140734317 140734460 -14895660 + B1_Mur2 SINE Alu 2 147 -2 6 1658 822 234 68 19 chr4 140735660 140735865 -14894255 + B3 SINE B2 2 216 0 6 1658 1476 28 44 6 chr4 140735874 140736055 -14894065 - B2_Mm1a SINE B2 -4 189 2 6 1658 723 156 0 0 chr4 140736583 140736692 -14893428 + B1_Mur2 SINE Alu 13 121 -28 6 1658 243 0 0 0 chr4 140736692 140736719 -14893401 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1658 570 194 27 18 chr4 140737842 140737952 -14892168 - B3 SINE B2 -105 111 1 6 1658 581 142 60 8 chr4 140737952 140738058 -14892062 + ORR1C2 LTR MaLR 279 384 0 6 1658 1197 61 0 0 chr4 140738457 140738604 -14891516 - B1_Mus2 SINE Alu 0 147 1 6 1658 690 270 60 93 chr4 140738668 140738970 -14891150 - B4A SINE B4 0 292 1 6 1658 313 314 106 28 chr4 140738995 140739136 -14890984 + RSINE1 SINE B4 12 163 -2 6 1658 703 219 36 7 chr4 140739214 140739352 -14890768 - B1_Mur2 SINE Alu -1 148 7 6 1658 280 304 20 71 chr4 140739277 140739376 -14890744 - MT2B LTR ERVL -361 240 147 6 1658 213 39 0 0 chr4 140739506 140739532 -14890588 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 6 1658 345 165 62 12 chr4 140739548 140739628 -14890492 - B3 SINE B2 -6 210 127 6 1658 488 187 22 0 chr4 140739645 140739736 -14890384 + PB1D9 SINE Alu 22 114 -6 6 1658 509 215 76 15 chr4 140739772 140739904 -14890216 - B3 SINE B2 -75 141 2 6 1658 775 142 55 34 chr4 140741155 140741301 -14888819 + B1_Mur4 SINE Alu 2 150 0 6 1658 496 189 37 9 chr4 140741606 140741713 -14888407 - PB1D9 SINE Alu -8 112 3 6 1658 188 34 0 33 chr4 140741716 140741746 -14888374 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 1658 434 137 41 0 chr4 140741787 140741860 -14888260 - ORR1B1 LTR MaLR 0 394 319 6 1658 1389 127 32 0 chr4 140741857 140742077 -14888043 + ORR1B1 LTR MaLR 109 335 -59 6 1658 241 378 7 43 chr4 140742999 140743140 -14886980 + B1F SINE Alu 1 136 -13 6 1658 254 250 181 0 chr4 140743412 140743484 -14886636 - B3 SINE B2 -100 116 32 6 1658 1000 71 0 0 chr4 140743867 140743994 -14886126 + B1_Mus1 SINE Alu 2 128 -20 6 1658 618 202 87 24 chr4 140744063 140744190 -14885930 + B1_Mus2 SINE Alu 1 135 -12 6 1658 261 191 0 0 chr4 140744194 140744241 -14885879 - ORR1A3 LTR MaLR -8 318 272 6 1658 351 77 0 0 chr4 140744255 140744307 -14885813 - B1_Mur4 SINE Alu 0 150 99 6 1658 1897 130 11 0 chr4 140744303 140744587 -14885533 - ORR1A3 LTR MaLR -39 287 1 6 1658 632 311 56 28 chr4 140744602 140744819 -14885301 - MT2A LTR ERVL -18 536 279 6 1658 312 336 48 0 chr4 140744943 140745047 -14885073 + MTEa LTR MaLR 29 137 -242 6 1658 277 326 47 78 chr4 140745191 140745278 -14884842 + MT2B LTR ERVL 78 216 -385 6 1658 310 233 0 64 chr4 140745278 140745356 -14884764 - MTD LTR MaLR -266 153 81 6 1658 763 43 0 0 chr4 140745327 140745419 -14884701 + B1_Mus2 SINE Alu 56 147 0 6 1658 277 326 47 78 chr4 140745356 140745384 -14884736 + MT2B LTR ERVL 217 264 -337 6 1658 204 125 0 0 chr4 140745419 140745451 -14884669 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1658 390 204 65 0 chr4 140745451 140745544 -14884576 - MTD LTR MaLR -299 120 22 6 1658 220 0 86 0 chr4 140745580 140745615 -14884505 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1658 1195 55 0 7 chr4 140745615 140745753 -14884367 - B1_Mus1 SINE Alu -9 139 2 6 1658 586 269 55 65 chr4 140745860 140746021 -14884099 + B3A SINE B2 2 166 -32 6 1658 201 108 0 0 chr4 140746021 140746058 -14884062 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1658 586 269 55 65 chr4 140746058 140746095 -14884025 + B3A SINE B2 167 198 0 6 1658 626 173 165 12 chr4 140746307 140746477 -14883643 - RMER1B Other Other 0 1066 871 6 1658 392 136 0 0 chr4 140746565 140746624 -14883496 - B1_Mus1 SINE Alu -89 59 1 6 1658 3982 151 99 74 chr4 140746624 140747474 -14882646 - RMER19B LTR ERVK -31 871 1 6 1658 780 123 82 7 chr4 140747474 140747621 -14882499 - RMER1B Other Other -191 875 718 6 1658 377 211 21 32 chr4 140747662 140747755 -14882365 - RMER1A Other Other -899 131 40 6 1658 809 171 27 7 chr4 140747765 140747912 -14882208 - B1_Mur4 SINE Alu 0 150 1 6 1658 210 186 0 85 chr4 140747914 140747961 -14882159 - PB1D7 SINE Alu 0 120 78 6 1658 496 291 70 37 chr4 140748236 140748450 -14881670 + ID_B1 SINE B4 1 221 -3 6 1658 892 118 22 0 chr4 140748471 140748606 -14881514 + B1_Mus2 SINE Alu 10 147 0 6 1658 1104 186 31 0 chr4 140748637 140748831 -14881289 - B3 SINE B2 -8 208 9 6 1658 419 280 32 8 chr4 140749806 140749932 -14880188 - RSINE1 SINE B4 -35 130 2 6 1658 321 188 12 70 chr4 140749988 140750074 -14880046 + B3A SINE B2 1 81 -117 6 1658 23 0 0 0 chr4 140750114 140750137 -14879983 + AT_rich Low_complexity Low_complexity 1 23 0 6 1658 231 266 48 48 chr4 140750161 140750244 -14879876 + RLTR25A LTR ERVK 850 932 -171 6 1658 530 218 26 26 chr4 140750480 140750593 -14879527 - B1_Mur4 SINE Alu 0 150 38 6 1658 827 161 206 33 chr4 140750593 140750773 -14879347 - B3 SINE B2 -5 211 1 6 1658 1102 96 65 33 chr4 140751395 140751579 -14878541 - B2_Mm2 SINE B2 -5 190 1 6 1658 552 208 0 19 chr4 140751914 140752022 -14878098 + PB1D9 SINE Alu 15 120 0 6 1658 399 228 0 25 chr4 140752120 140752201 -14877919 + ID_B1 SINE B4 146 224 0 6 1658 1252 132 21 0 chr4 140752204 140752393 -14877727 + B2_Mm2 SINE B2 1 193 -2 6 1658 412 229 212 0 chr4 140752720 140752838 -14877282 - B1F2 SINE Alu -2 147 5 6 1658 957 64 0 0 chr4 140753588 140753713 -14876407 + (TG)n Simple_repeat Simple_repeat 2 126 0 6 1658 375 23 0 0 chr4 140754361 140754405 -14875715 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1658 381 43 0 0 chr4 140754405 140754451 -14875669 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1658 597 192 0 0 chr4 140754645 140754770 -14875350 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 6 1658 471 284 9 18 chr4 140757461 140757572 -14872548 + PB1D10 SINE Alu 7 116 -1 6 1658 317 186 216 72 chr4 140757572 140757600 -14872520 + B4A SINE B4 92 250 -42 6 1658 227 148 279 0 chr4 140757610 140757671 -14872449 - PB1D9 SINE Alu 0 120 43 6 1658 222 62 0 0 chr4 140757798 140757830 -14872290 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 6 1658 605 107 54 72 chr4 140761819 140761930 -14868190 + B1_Mur2 SINE Alu 34 142 -7 6 1658 297 0 0 0 chr4 140761930 140761963 -14868157 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 6 1658 1164 109 0 0 chr4 140761965 140762232 -14867888 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 6 1658 957 86 16 0 chr4 140762500 140762628 -14867492 + B1_Mur3 SINE Alu 13 142 -7 6 1658 189 0 0 0 chr4 140763307 140763328 -14866792 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 6 1658 597 293 0 13 chr4 140763332 140763484 -14866636 - B3A SINE B2 -48 150 1 6 1658 2302 144 48 55 chr4 140763521 140763997 -14866123 - IAPLTR2_Mm LTR ERVK -2 473 1 6 1658 6585 29 2 6 chr4 140763997 140764795 -14865325 - IAPEz-int LTR ERVK 0 6481 5687 6 1658 1830 0 0 0 chr4 140764787 140764998 -14865122 - IAPEz-int LTR ERVK -2148 4333 4123 6 1658 900 80 24 0 chr4 140765000 140765125 -14864995 - IAPEz-int LTR ERVK -2770 4910 4783 6 1658 1780 98 0 0 chr4 140765120 140765366 -14864754 - IAPEz-int LTR ERVK -5183 2497 2252 6 1658 434 66 0 32 chr4 140765371 140765434 -14864686 - IAPEz-int LTR ERVK -5062 1419 1359 6 1658 4263 46 46 2 chr4 140765466 140766030 -14864090 - IAPEz-int LTR ERVK -5890 591 3 6 1658 2302 144 48 55 chr4 140766030 140766506 -14863614 - IAPLTR2_Mm LTR ERVK -2 473 1 6 1658 375 261 57 211 chr4 140766516 140766691 -14863429 - RSINE1 SINE B4 -2 163 16 6 1658 258 297 234 0 chr4 140767707 140767818 -14862302 + MLT1B LTR MaLR 1 137 -253 6 1658 755 189 16 0 chr4 140767847 140767974 -14862146 + B1_Mur1 SINE Alu 6 134 -15 6 1658 500 265 0 19 chr4 140768041 140768145 -14861975 + PB1D10 SINE Alu 10 111 -6 6 1658 305 297 188 0 chr4 140768145 140768169 -14861951 + B4 SINE B4 95 246 -46 6 1658 287 230 135 61 chr4 140768146 140768294 -14861826 + MLT1B LTR MaLR 197 355 -35 6 1658 182 259 36 18 chr4 140768725 140768780 -14861340 + MIRb SINE MIR 38 93 -175 6 1658 255 200 163 22 chr4 140769058 140769150 -14860970 + L2b LINE L2 3271 3375 0 6 1658 719 183 52 22 chr4 140769358 140769492 -14860628 + B1_Mur3 SINE Alu 2 139 -10 6 1658 696 141 0 0 chr4 140769492 140769613 -14860507 + (GGA)n Simple_repeat Simple_repeat 1 121 0 6 1658 187 195 0 68 chr4 140769640 140769684 -14860436 - MIRm SINE MIR -120 156 116 6 1658 662 217 0 74 chr4 140770719 140770868 -14859252 - B1_Mur2 SINE Alu -6 143 6 6 1658 479 103 272 75 chr4 140770888 140771035 -14859085 - B2_Mm2 SINE B2 -19 176 1 6 1658 35 0 0 0 chr4 140771144 140771179 -14858941 + AT_rich Low_complexity Low_complexity 1 35 0 6 1658 1187 63 0 0 chr4 140771179 140771321 -14858799 - B1_Mus1 SINE Alu -5 143 2 6 1659 1136 130 22 0 chr4 140771372 140771557 -14858563 + B2_Mm2 SINE B2 1 189 -6 6 1659 803 142 78 50 chr4 140771562 140771703 -14858417 + B1_Mus1 SINE Alu 3 147 -1 6 1659 840 228 83 0 chr4 140771733 140771926 -14858194 + B3 SINE B2 2 210 -6 6 1659 304 264 24 0 chr4 140771937 140772062 -14858058 + ORR1B1-int LTR MaLR 632 759 -750 6 1659 1056 72 7 0 chr4 140771959 140772097 -14858023 + B1_Mm SINE Alu 9 147 0 6 1659 289 303 71 57 chr4 140772122 140772262 -14857858 + RSINE1 SINE B4 2 143 -22 6 1659 804 20 29 0 chr4 140772393 140772495 -14857625 - B1_Mus2 SINE Alu 0 147 43 6 1659 531 67 40 0 chr4 140772548 140772623 -14857497 + B2_Mm1t SINE B2 105 182 -11 6 1659 356 36 18 18 chr4 140772662 140772719 -14857401 + B2_Mm1a SINE B2 127 183 -10 6 1659 998 123 62 50 chr4 140772719 140772898 -14857222 - B2_Mm2 SINE B2 -14 181 1 6 1659 1573 42 0 40 chr4 140773387 140773587 -14856533 + B2_Mm1a SINE B2 1 192 -1 6 1659 223 204 20 0 chr4 140774298 140774347 -14855773 + MIR SINE MIR 99 148 -60 6 1659 180 194 28 0 chr4 140774436 140774472 -14855648 + L3 LINE CR1 164 200 -4289 6 1659 6460 103 19 27 chr4 140774611 140775576 -14854544 - RMER17B LTR ERVK 0 958 2 7 1659 21 0 0 0 chr4 140776122 140776143 -14853977 + GC_rich Low_complexity Low_complexity 1 21 0 7 1659 4361 140 97 53 chr4 140776218 140777070 -14853050 - RMER19B LTR ERVK -12 890 1 7 1659 1228 54 0 0 chr4 140777104 140777251 -14852869 + B1_Mus2 SINE Alu 1 147 0 7 1659 834 84 107 31 chr4 140777277 140777473 -14852647 - MurERV4_19-int LTR ERVK -20 5760 5550 7 1659 1461 68 5 10 chr4 140777473 140777666 -14852454 - B2_Mm2 SINE B2 -2 193 2 7 1659 446 104 39 0 chr4 140777671 140777748 -14852372 - L1Md_F2 LINE L1 -1 6581 6502 7 1659 911 150 38 269 chr4 140777748 140777892 -14852228 - MurERV4_19-int LTR ERVK -224 5556 5478 7 1659 1219 36 110 46 chr4 140777892 140778065 -14852055 + B2_Mm1a SINE B2 1 184 -9 7 1659 911 150 38 269 chr4 140778065 140778446 -14851674 - MurERV4_19-int LTR ERVK -303 5477 5200 7 1659 12788 106 9 43 chr4 140778445 140780167 -14849953 - MurERV4_19-int LTR ERVK -498 5282 3617 7 1659 445 62 0 0 chr4 140780167 140780231 -14849889 - L1Md_T LINE L1 0 6582 6519 7 1659 12788 106 9 43 chr4 140780231 140780555 -14849565 - MurERV4_19-int LTR ERVK -2164 3616 3296 7 1659 1143 78 25 91 chr4 140780555 140780752 -14849368 + B2_Mm1a SINE B2 1 184 -9 7 1659 12788 106 9 43 chr4 140780752 140780803 -14849317 - MurERV4_19-int LTR ERVK -2485 3295 3256 7 1659 9813 113 85 31 chr4 140780804 140781779 -14848341 - MurERV4_19-int LTR ERVK -2692 3088 2132 7 1659 1423 109 0 0 chr4 140781779 140781972 -14848148 - B2_Mm2 SINE B2 -2 193 1 7 1659 9813 113 85 31 chr4 140781972 140782689 -14847431 - MurERV4_19-int LTR ERVK -3649 2131 1305 7 1659 1004 112 7 0 chr4 140782703 140782855 -14847265 - B2_Mm1a SINE B2 -39 154 2 7 1659 2593 194 110 68 chr4 140782857 140783532 -14846588 - MurERV4_19-int LTR ERVK -5077 703 1 7 1659 4880 141 26 61 chr4 140783546 140784468 -14845652 - RMER19B LTR ERVK -12 890 1 7 1659 254 250 21 32 chr4 140784586 140784681 -14845439 + CT-rich Low_complexity Low_complexity 1 94 0 7 1659 2381 212 191 22 chr4 140784905 140785641 -14844479 + RMER13A LTR ERVK 1 860 0 7 1659 1171 241 243 36 chr4 140786142 140786371 -14843749 - Lx8 LINE L1 -339 7134 6815 7 1659 2963 50 58 40 chr4 140786371 140786771 -14843349 - MTB_Mm LTR MaLR 0 407 1 7 1659 1171 241 243 36 chr4 140786771 140786985 -14843135 - Lx8 LINE L1 -659 6814 6599 7 1659 200 318 15 0 chr4 140787340 140787406 -14842714 + CT-rich Low_complexity Low_complexity 6 72 0 7 1659 732 251 6 23 chr4 140787578 140787749 -14842371 + B3 SINE B2 12 179 -37 7 1659 358 244 106 32 chr4 140787733 140787856 -14842264 + B3 SINE B2 85 216 0 7 1659 252 281 37 0 chr4 140788117 140788199 -14841921 + (TCCA)n Simple_repeat Simple_repeat 2 86 0 7 1659 410 293 26 7 chr4 140788304 140788505 -14841615 + (TCCA)n Simple_repeat Simple_repeat 1 204 0 7 1659 616 271 29 0 chr4 140788557 140788697 -14841423 + B1_Mur1 SINE Alu 3 146 -3 7 1659 235 33 0 0 chr4 140789345 140789375 -14840745 + ORR1A3 LTR MaLR 259 288 -38 7 1659 1046 111 14 7 chr4 140789375 140789520 -14840600 + B1_Mus1 SINE Alu 3 148 0 7 1659 251 356 95 14 chr4 140789689 140789704 -14840416 - RSINE1 SINE B4 -4 161 86 7 1659 583 194 30 68 chr4 140789704 140789752 -14840368 - B3 SINE B2 -88 128 85 7 1659 5005 85 13 63 chr4 140789752 140790540 -14839580 + RMER17A LTR ERVK 1 748 -3 7 1659 251 356 95 14 chr4 140790540 140790624 -14839496 - RSINE1 SINE B4 -80 85 2 7 1659 380 55 0 52 chr4 140790659 140790717 -14839403 - ORR1A2 LTR MaLR 0 326 272 7 1659 1047 44 0 7 chr4 140790721 140790858 -14839262 - B1_Mm SINE Alu -1 146 11 7 1659 1931 91 10 27 chr4 140790876 140791170 -14838950 - ORR1A2 LTR MaLR -38 289 1 7 1659 504 0 0 0 chr4 140791482 140791538 -14838582 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1659 277 268 148 28 chr4 140792267 140792409 -14837711 + MIR SINE MIR 16 175 -93 7 1659 1517 63 11 0 chr4 140792440 140792631 -14837489 - B2_Mm1a SINE B2 0 193 1 7 1659 239 272 110 62 chr4 140792713 140792858 -14837262 + MIR SINE MIR 20 171 -91 7 1659 281 256 0 8 chr4 140793090 140793216 -14836904 + (TG)n Simple_repeat Simple_repeat 2 126 0 7 1659 700 157 16 0 chr4 140793481 140793602 -14836518 + B1_Mur1 SINE Alu 6 128 -21 7 1659 426 254 29 29 chr4 140793602 140793619 -14836501 + ID_B1 SINE B4 87 224 0 7 1659 894 157 6 11 chr4 140793627 140793652 -14836468 + polypurine Low_complexity Low_complexity 2 26 0 7 1659 1255 54 0 0 chr4 140793652 140793799 -14836321 + B1_Mm SINE Alu 1 147 0 7 1659 894 157 6 11 chr4 140793799 140793953 -14836167 + GA-rich Low_complexity Low_complexity 27 180 0 7 1659 545 194 9 0 chr4 140793979 140794087 -14836033 + B3 SINE B2 2 110 -106 7 1659 366 248 142 9 chr4 140794310 140794416 -14835704 + PB1D9 SINE Alu 1 120 0 7 1659 1596 261 73 25 chr4 140794421 140794984 -14835136 - Lx7 LINE L1 -388 7308 6719 7 1659 830 214 92 15 chr4 140795900 140796095 -14834025 + B3 SINE B2 1 210 -6 7 1659 1010 178 70 20 chr4 140796108 140796309 -14833811 - B3 SINE B2 0 216 6 7 1659 23 33 0 0 chr4 140796314 140796344 -14833776 + AT_rich Low_complexity Low_complexity 1 30 0 7 1659 392 254 6 198 chr4 140796352 140796509 -14833611 + ID_B1 SINE B4 98 224 0 7 1659 591 265 74 6 chr4 140797263 140797426 -14832694 + ID_B1 SINE B4 5 178 -46 7 1659 902 224 98 35 chr4 140797583 140797786 -14832334 - B3 SINE B2 0 216 1 7 1659 217 250 16 48 chr4 140800423 140800486 -14829634 + L2c LINE L2 3135 3195 -192 7 1659 189 0 0 0 chr4 140800597 140800618 -14829502 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1659 270 0 0 0 chr4 140801473 140801503 -14828617 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1659 408 55 0 0 chr4 140801503 140801558 -14828562 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1659 251 267 43 43 chr4 140801781 140801875 -14828245 + MIR SINE MIR 14 107 -155 7 1659 226 296 42 0 chr4 140802623 140802694 -14827426 - MIRc SINE MIR -124 144 71 7 1659 184 366 0 0 chr4 140803664 140803735 -14826385 + L2b LINE L2 3304 3374 -1 7 1659 1120 101 71 22 chr4 140805788 140805970 -14824150 - B2_Mm1a SINE B2 -2 191 1 7 1659 23 54 0 0 chr4 140806019 140806056 -14824064 + AT_rich Low_complexity Low_complexity 1 37 0 7 1659 324 0 0 0 chr4 140806076 140806112 -14824008 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1659 1222 56 0 0 chr4 140806128 140806271 -14823849 - B1_Mus1 SINE Alu -5 143 1 7 1659 262 241 0 0 chr4 140806362 140806420 -14823700 - RMER15 LTR ERVL -108 467 410 7 1659 1413 75 21 21 chr4 140807450 140807640 -14822480 - B2_Mm2 SINE B2 -5 190 1 7 1659 756 189 56 0 chr4 140807655 140807798 -14822322 - RSINE1 SINE B4 -6 159 9 7 1659 700 220 0 28 chr4 140807976 140808121 -14821999 - B1_Mur1 SINE Alu -3 146 6 7 1659 284 265 0 143 chr4 140808022 140808141 -14821979 - MT2B LTR ERVL -344 257 156 7 1659 437 289 85 8 chr4 140808146 140808275 -14821845 - B1F SINE Alu -1 148 10 7 1659 299 226 84 21 chr4 140808290 140808385 -14821735 - B3A SINE B2 -7 191 91 7 1659 196 30 29 29 chr4 140808465 140808499 -14821621 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 7 1659 872 172 7 7 chr4 140808503 140808649 -14821471 - B1_Mus1 SINE Alu -2 146 1 7 1659 765 241 93 16 chr4 140808676 140808870 -14821250 - B3 SINE B2 -6 210 2 7 1659 583 179 145 0 chr4 140808994 140809111 -14821009 + B1_Mur2 SINE Alu 1 134 -15 7 1659 639 48 0 0 chr4 140809114 140809197 -14820923 + (TAGA)n Simple_repeat Simple_repeat 1 83 0 7 1659 183 156 0 0 chr4 140809227 140809259 -14820861 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 7 1659 1440 139 9 26 chr4 140809488 140809717 -14820403 + URR1B DNA MER1_type 1 225 0 7 1659 221 149 64 0 chr4 140809973 140810020 -14820100 - B1F SINE Alu -61 88 39 7 1659 453 241 80 57 chr4 140811139 140811307 -14818813 - MIRb SINE MIR -68 200 40 7 1659 645 186 0 17 chr4 140811331 140811446 -14818674 - PB1D7 SINE Alu -7 113 1 7 1659 1367 78 39 6 chr4 140811771 140811952 -14818168 - B2_Mm2 SINE B2 -7 188 2 7 1659 183 304 174 0 chr4 140812416 140812508 -14817612 + L3b LINE CR1 238 345 -137 7 1659 772 219 87 24 chr4 140813445 140813653 -14816467 - B3 SINE B2 0 195 1 7 1659 748 117 50 0 chr4 140813681 140813801 -14816319 + B1_Mus1 SINE Alu 1 126 -22 7 1659 407 253 30 29 chr4 140813801 140813820 -14816300 + ID_B1 SINE B4 122 223 -1 7 1659 267 209 54 0 chr4 140814409 140814480 -14815640 + B1_Mus2 SINE Alu 3 88 -32 7 1659 603 0 0 0 chr4 140814490 140814557 -14815563 + (TC)n Simple_repeat Simple_repeat 1 67 0 7 1659 949 33 0 0 chr4 140814837 140814958 -14815162 - B1_Mus1 SINE Alu 0 148 28 7 1659 704 271 52 0 chr4 140814956 140815166 -14814954 - ID_B1 SINE B4 -3 221 1 7 1659 655 255 29 34 chr4 140815367 140815574 -14814546 - L1MD3 LINE L1 -310 7685 7480 7 1659 377 250 22 0 chr4 140815614 140815706 -14814414 - B1F SINE Alu -51 98 5 7 1659 218 191 176 0 chr4 140815769 140815837 -14814283 - PB1D10 SINE Alu -17 100 21 7 1659 250 138 35 0 chr4 140815902 140815960 -14814160 + CT-rich Low_complexity Low_complexity 3 62 0 7 1659 1339 199 107 45 chr4 140816547 140816988 -14813132 + RMER13A LTR ERVK 177 722 -186 7 1659 618 197 16 16 chr4 140817212 140817336 -14812784 - RSINE1 SINE B4 -39 126 3 7 1659 1219 71 0 0 chr4 140817410 140817579 -14812541 + B2_Mm2 SINE B2 3 171 -24 7 1659 391 235 40 20 chr4 140817634 140817734 -14812386 - RLTR23 LTR ERV1 -1 429 328 7 1659 819 291 22 142 chr4 140817799 140817942 -14812178 + RLTR22_Mur LTR ERVK 415 532 -1316 7 1659 1043 72 65 0 chr4 140817942 140818080 -14812040 + B1_Mus2 SINE Alu 1 147 0 7 1659 819 291 22 142 chr4 140818080 140818380 -14811740 + RLTR22_Mur LTR ERVK 533 805 -1043 7 1659 508 217 0 0 chr4 140818633 140818725 -14811395 + B1_Mur1 SINE Alu 56 147 -2 7 1659 230 0 33 0 chr4 140818857 140818887 -14811233 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1659 2377 163 65 31 chr4 140819206 140819241 -14810879 + RMER4B LTR ERVK 47 74 -511 7 1659 438 20 0 0 chr4 140819241 140819292 -14810828 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1659 2377 163 65 31 chr4 140819292 140819764 -14810356 + RMER4B LTR ERVK 75 571 -14 7 1659 498 191 42 42 chr4 140820029 140820149 -14809971 + PB1D9 SINE Alu 1 120 0 7 1659 662 186 30 23 chr4 140820185 140820449 -14809671 + MYSERV-int LTR ERVK 5312 5542 -1008 7 1659 1547 63 5 0 chr4 140820451 140820642 -14809478 + B2_Mm1t SINE B2 1 192 -1 8 1659 247 214 54 54 chr4 140820685 140820731 -14809389 + MT2B LTR ERVL 214 259 -342 8 1659 1094 55 0 0 chr4 140820731 140820876 -14809244 + B1_Mus2 SINE Alu 3 147 0 8 1659 566 234 14 7 chr4 140820892 140821034 -14809086 + MYSERV-int LTR ERVK 6408 6550 0 8 1659 911 247 35 38 chr4 140821035 140821351 -14808769 + RLTR15 LTR ERVK 2 316 -43 8 1659 1217 222 92 26 chr4 140821464 140821555 -14808565 + ORR1D1 LTR MaLR 1 92 -282 8 1659 2431 96 3 70 chr4 140821555 140821620 -14808500 - ORR1A1 LTR MaLR 0 346 306 8 1659 1256 48 0 0 chr4 140821620 140821767 -14808353 - B1_Mm SINE Alu 0 147 1 8 1659 2431 96 3 70 chr4 140821767 140822072 -14808048 - ORR1A1 LTR MaLR -41 305 1 8 1659 1217 222 92 26 chr4 140822072 140822327 -14807793 + ORR1D1 LTR MaLR 93 370 -4 8 1659 458 223 45 0 chr4 140822334 140822446 -14807674 + B3 SINE B2 98 214 -2 8 1659 402 257 55 0 chr4 140822478 140822587 -14807533 + RSINE1 SINE B4 2 116 -49 8 1659 384 40 0 0 chr4 140822596 140822646 -14807474 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1659 423 0 0 0 chr4 140822646 140822692 -14807428 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1659 637 146 46 99 chr4 140822969 140823121 -14806999 - RMER13A LTR ERVK -581 279 136 8 1659 978 182 143 27 chr4 140823127 140823386 -14806734 + RMER2 LTR ERV1 1 289 -278 8 1659 995 142 0 20 chr4 140823401 140823552 -14806568 + B1_Mur4 SINE Alu 2 149 -1 8 1659 267 266 0 37 chr4 140823699 140823781 -14806339 + CT-rich Low_complexity Low_complexity 2 80 0 8 1659 253 353 76 19 chr4 140823966 140824177 -14805943 + L1M5 LINE L1 5543 5765 -408 8 1659 215 241 18 18 chr4 140824276 140824331 -14805789 + PB1 SINE Alu 69 123 -4 8 1659 953 207 19 24 chr4 140824343 140824541 -14805579 + B3 SINE B2 10 208 -8 8 1659 1388 73 14 91 chr4 140824541 140824582 -14805538 + B2_Mm2 SINE B2 2 38 -157 8 1659 1042 106 0 0 chr4 140824582 140824723 -14805397 + B1_Mus1 SINE Alu 2 142 -6 8 1659 1104 8 0 0 chr4 140824724 140824849 -14805271 + (GA)n Simple_repeat Simple_repeat 1 125 0 8 1659 1388 73 14 91 chr4 140824849 140825015 -14805105 + B2_Mm2 SINE B2 39 195 0 8 1659 1165 84 0 0 chr4 140825293 140825436 -14804684 - B1_Mus2 SINE Alu -1 146 4 8 1659 495 0 0 0 chr4 140825436 140825491 -14804629 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1659 714 254 30 6 chr4 140825582 140825748 -14804372 + B3 SINE B2 1 170 -46 8 1659 192 125 0 0 chr4 140825753 140825785 -14804335 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1659 564 102 50 30 chr4 140825800 140825901 -14804219 + B1_Mus2 SINE Alu 45 147 0 8 1659 3421 122 90 25 chr4 140825899 140825994 -14804126 + RMER19A LTR ERVK 87 178 -559 8 1659 2763 117 68 2 chr4 140825994 140826404 -14803716 - RLTR9B LTR ERVK 0 437 1 8 1659 3421 122 90 25 chr4 140826404 140826900 -14803220 + RMER19A LTR ERVK 179 718 -19 8 1659 1215 41 0 14 chr4 140826900 140827048 -14803072 + B1_Mus2 SINE Alu 2 147 0 8 1659 797 62 54 0 chr4 140827085 140827197 -14802923 + B1_Mus1 SINE Alu 18 135 -13 8 1659 340 0 83 0 chr4 140827198 140827258 -14802862 + (TGGGGG)n Simple_repeat Simple_repeat 2 66 0 8 1659 207 302 146 0 chr4 140827397 140827493 -14802627 + L2a LINE L2 3267 3376 -50 8 1659 440 250 20 0 chr4 140828240 140828340 -14801780 + PB1D10 SINE Alu 9 110 -7 8 1659 304 220 286 0 chr4 140828350 140828441 -14801679 + PB1D10 SINE Alu 1 117 0 8 1659 518 189 39 45 chr4 140828444 140828625 -14801495 + B3A SINE B2 1 177 -18 8 1659 495 319 6 18 chr4 140828632 140828795 -14801325 + RSINE1 SINE B4 5 165 0 8 1659 204 177 194 0 chr4 140828962 140829024 -14801096 - MIRc SINE MIR -108 160 87 8 1659 348 262 91 15 chr4 140829049 140829181 -14800939 + RSINE1 SINE B4 3 144 -21 8 1659 198 268 134 0 chr4 140829738 140829820 -14800300 - MIRb SINE MIR -132 136 44 8 1659 479 139 35 24 chr4 140829844 140830014 -14800106 + (TG)n Simple_repeat Simple_repeat 1 172 0 8 1659 380 200 39 6 chr4 140830046 140830202 -14799918 + (TG)n Simple_repeat Simple_repeat 1 161 0 8 1659 786 230 106 51 chr4 140830204 140830479 -14799641 - B4A SINE B4 0 292 3 8 1659 293 304 44 20 chr4 140831842 140831951 -14798169 + MIRb SINE MIR 35 149 -127 8 1659 1180 61 0 39 chr4 140832249 140832386 -14797734 + B1_Mus1 SINE Alu 1 137 -11 8 1659 253 0 54 0 chr4 140832386 140832423 -14797697 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1659 1180 61 0 39 chr4 140832423 140832439 -14797681 + B1_Mus1 SINE Alu 138 148 0 8 1659 567 0 0 0 chr4 140832476 140832539 -14797581 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1659 853 145 21 21 chr4 140832558 140832699 -14797421 + B1_Mm SINE Alu 1 141 -6 8 1659 228 35 0 0 chr4 140832700 140832729 -14797391 + (CAA)n Simple_repeat Simple_repeat 1 29 0 8 1659 401 181 36 12 chr4 140832785 140832869 -14797251 + B1_Mur1 SINE Alu 62 147 -2 8 1659 490 312 64 8 chr4 140833386 140833582 -14796538 - MIR SINE MIR -6 262 60 8 1659 198 323 18 19 chr4 140833718 140833800 -14796320 + L2a LINE L2 3083 3166 -221 8 1659 320 219 219 0 chr4 140834883 140834979 -14795141 + B1_Mur4 SINE Alu 1 117 -33 8 1659 636 48 0 0 chr4 140834979 140835063 -14795057 + (GA)n Simple_repeat Simple_repeat 1 84 0 8 1659 477 310 57 0 chr4 140835068 140835226 -14794894 - ID_B1 SINE B4 -50 174 8 8 1659 485 254 26 0 chr4 140835237 140835351 -14794769 - PB1D10 SINE Alu 0 117 1 8 1659 206 291 36 0 chr4 140835541 140835596 -14794524 + L2a LINE L2 3303 3359 -67 8 1659 556 14 0 0 chr4 140835633 140835704 -14794416 + L1Md_A LINE L1 6511 6581 -1 8 1659 264 154 0 0 chr4 140835737 140835789 -14794331 + CT-rich Low_complexity Low_complexity 4 55 0 8 1659 785 191 0 0 chr4 140835825 140835951 -14794169 - B1_Mur1 SINE Alu -19 130 5 8 1659 216 0 0 0 chr4 140835971 140835995 -14794125 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1659 1097 66 0 14 chr4 140835995 140836133 -14793987 + B1_Mur3 SINE Alu 1 136 -13 8 1659 315 0 0 0 chr4 140836133 140836168 -14793952 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 8 1659 574 286 27 13 chr4 140836190 140836339 -14793781 - RSINE1 SINE B4 0 165 15 8 1659 506 180 0 48 chr4 140836410 140836515 -14793605 - PB1D10 SINE Alu 0 117 18 8 1659 990 157 0 0 chr4 140836833 140837011 -14793109 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 8 1659 235 71 48 0 chr4 140837474 140837516 -14792604 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 8 1659 225 65 0 0 chr4 140837819 140837850 -14792270 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1659 280 315 61 38 chr4 140838078 140838210 -14791910 - MIRc SINE MIR -119 149 15 8 1659 2218 131 88 0 chr4 140838408 140838805 -14791315 - BGLII_B LTR ERVK 0 441 10 8 1659 1238 61 0 0 chr4 140839015 140839162 -14790958 - B1_Mm SINE Alu 0 147 1 8 1659 576 0 0 0 chr4 140839437 140839501 -14790619 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1659 297 0 0 0 chr4 140839501 140839533 -14790587 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1659 497 30 15 0 chr4 140839761 140839828 -14790292 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1659 432 0 0 0 chr4 140840303 140840351 -14789769 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1659 711 105 113 0 chr4 140840841 140840965 -14789155 - B1_Mur4 SINE Alu -1 149 12 8 1659 1482 38 11 16 chr4 140842088 140842274 -14787846 + B2_Mm2 SINE B2 1 185 -10 8 1659 1421 64 26 11 chr4 140842274 140842464 -14787656 + B2_Mm1t SINE B2 1 193 0 8 1659 656 288 116 58 chr4 140844497 140844773 -14785347 - B4 SINE B4 0 292 1 8 1659 600 190 146 26 chr4 140844847 140844998 -14785122 + B3 SINE B2 48 216 0 8 1659 225 300 68 29 chr4 140845003 140845106 -14785014 - PB1D9 SINE Alu -13 107 1 8 1659 733 227 14 0 chr4 140845113 140845254 -14784866 - B1F SINE Alu 0 149 7 8 1659 680 262 65 37 chr4 140845254 140845327 -14784793 - ID_B1 SINE B4 0 224 5 8 1659 216 347 14 27 chr4 140845890 140845964 -14784156 - L2b LINE L2 -30 3345 3273 8 1659 202 354 45 43 chr4 140846000 140846178 -14783942 + MIRb SINE MIR 3 182 -86 8 1659 252 0 0 0 chr4 140846550 140846578 -14783542 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1659 198 0 0 0 chr4 140846926 140846948 -14783172 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1659 554 213 55 8 chr4 140846953 140847081 -14783039 - B1_Mur2 SINE Alu -2 147 14 8 1659 476 282 38 8 chr4 140847132 140847264 -14782856 - RSINE1 SINE B4 -28 137 2 8 1659 556 232 0 42 chr4 140848093 140848237 -14781883 - ID_B1 SINE B4 0 224 87 8 1659 320 233 110 0 chr4 140848235 140848308 -14781812 - PB1D7 SINE Alu -35 85 5 8 1659 223 172 30 30 chr4 140849185 140849251 -14780869 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 8 1659 272 347 79 38 chr4 140849828 140849987 -14780133 + MIRm SINE MIR 2 163 -45 8 1659 591 217 24 79 chr4 140850553 140850718 -14779402 + RSINE1 SINE B4 2 157 -8 8 1659 332 180 10 101 chr4 140850729 140850828 -14779292 + RLTR25B LTR ERVK 424 513 -515 8 1659 838 62 0 0 chr4 140850746 140850858 -14779262 + B1_Mm SINE Alu 36 147 0 8 1659 290 260 17 96 chr4 140850881 140850996 -14779124 + MT2B LTR ERVL 152 257 -344 8 1659 698 164 37 7 chr4 140850902 140851037 -14779083 + B1_Mur2 SINE Alu 9 147 -2 8 1659 595 67 11 11 chr4 140851037 140851127 -14778993 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 8 1659 864 150 18 87 chr4 140851203 140851422 -14778698 + RMER10B LTR ERVL 195 398 0 8 1659 28 48 0 0 chr4 140851947 140851989 -14778131 + GC_rich Low_complexity Low_complexity 1 42 0 8 1659 318 50 0 0 chr4 140852213 140852253 -14777867 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1659 314 327 0 37 chr4 140852339 140852447 -14777673 - L2c LINE L2 -10 3377 3274 8 1659 326 278 28 0 chr4 140852683 140852791 -14777329 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 9 1659 346 270 18 9 chr4 140852938 140853050 -14777070 + PB1D10 SINE Alu 5 117 0 9 1659 842 122 58 0 chr4 140853062 140853201 -14776919 + B1_Mus2 SINE Alu 1 147 0 9 1659 1322 91 10 31 chr4 140854388 140854580 -14775540 + B2_Mm2 SINE B2 1 188 -7 9 1659 435 119 0 0 chr4 140854662 140854729 -14775391 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 1659 545 240 40 0 chr4 140854729 140854854 -14775266 - B1_Mur2 SINE Alu -15 134 5 9 1659 324 283 72 40 chr4 140854950 140855075 -14775045 + ID_B1 SINE B4 82 210 -14 9 1659 752 253 41 21 chr4 140855089 140855283 -14774837 + B3A SINE B2 1 198 0 9 1659 250 320 115 39 chr4 140855493 140855649 -14774471 - MIRb SINE MIR -2 266 99 9 1659 360 43 0 0 chr4 140856705 140856751 -14773369 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1659 558 0 0 0 chr4 140859196 140859258 -14770862 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1659 431 194 112 75 chr4 140859261 140859395 -14770725 - RSINE1 SINE B4 -23 142 4 9 1659 731 134 26 9 chr4 140860487 140860600 -14769520 - PB1D9 SINE Alu -5 115 1 9 1659 849 66 329 0 chr4 140860600 140860737 -14769383 - B2_Mm2 SINE B2 -13 182 1 9 1659 830 212 7 0 chr4 140860749 140860895 -14769225 - B1_Mur1 SINE Alu -2 147 1 9 1659 240 35 0 0 chr4 140861140 140861169 -14768951 + (TTC)n Simple_repeat Simple_repeat 2 30 0 9 1659 210 71 0 0 chr4 140861386 140861414 -14768706 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 9 1659 316 133 708 0 chr4 140861418 140861538 -14768582 - B3 SINE B2 -11 205 1 9 1659 485 204 8 117 chr4 140861789 140861917 -14768203 - B1_Mur1 SINE Alu -1 148 35 9 1659 281 317 32 24 chr4 140863112 140863238 -14766882 - MIR3 SINE MIR 0 208 82 9 1659 1449 60 22 5 chr4 140863280 140863464 -14766656 - B2_Mm2 SINE B2 -8 187 1 9 1659 181 346 122 49 chr4 140863520 140863684 -14766436 - L2c LINE L2 -25 3362 3187 9 1659 588 276 26 19 chr4 140864070 140864225 -14765895 + ID_B1 SINE B4 67 222 -2 9 1659 449 371 68 20 chr4 140865147 140865397 -14764723 + MIR SINE MIR 1 262 0 9 1659 244 306 53 43 chr4 140865424 140865541 -14764579 + MIRc SINE MIR 27 156 -120 9 1659 273 304 125 42 chr4 140865912 140866080 -14764040 + MIR3 SINE MIR 16 197 -11 9 1659 188 346 161 0 chr4 140867019 140867100 -14763020 - MIR SINE MIR -91 171 78 9 1659 237 347 79 16 chr4 140867886 140868012 -14762108 - MIRb SINE MIR -30 238 105 9 1659 539 207 0 7 chr4 140869232 140869383 -14760737 + (TTCA)n Simple_repeat Simple_repeat 1 150 0 9 1659 269 328 73 16 chr4 140869392 140869516 -14760604 - L2b LINE L2 -4 3371 3241 9 1659 376 319 104 61 chr4 140870662 140870892 -14759228 + MIRb SINE MIR 22 261 -7 9 1659 269 238 0 0 chr4 140872692 140872755 -14757365 + G-rich Low_complexity Low_complexity 1 63 0 9 1659 245 280 18 83 chr4 140873181 140873290 -14756830 + B1F2 SINE Alu 30 131 -18 9 1659 555 242 0 48 chr4 140873293 140873419 -14756701 + ID_B1 SINE B4 84 203 -21 9 1659 310 305 85 27 chr4 140873422 140873603 -14756517 + B4A SINE B4 8 279 -13 9 1659 534 70 0 0 chr4 140873611 140873682 -14756438 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1659 816 333 40 4 chr4 140873802 140874076 -14756044 + B4A SINE B4 6 289 -3 9 1659 242 268 14 27 chr4 140875207 140875280 -14754840 + ZP3AR Satellite Satellite 21 92 -120 9 1659 311 254 14 14 chr4 140875230 140875302 -14754818 + ID SINE ID 2 73 -151 9 1659 279 237 89 38 chr4 140875330 140875409 -14754711 + ID_B1 SINE B4 135 217 -7 9 1659 505 189 9 35 chr4 140875412 140875527 -14754593 + PB1D9 SINE Alu 9 120 0 9 1659 287 231 22 0 chr4 140875796 140875887 -14754233 + (TA)n Simple_repeat Simple_repeat 1 93 0 9 1659 203 0 37 0 chr4 140876092 140876119 -14754001 + (TA)n Simple_repeat Simple_repeat 2 29 0 9 1659 689 112 9 0 chr4 140876161 140876268 -14753852 + B1_Mur4 SINE Alu 43 150 0 9 1659 537 58 0 0 chr4 140876532 140876601 -14753519 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 9 1659 1102 76 6 0 chr4 140876601 140876758 -14753362 - B2_Mm1a SINE B2 -35 158 1 9 1659 361 353 13 0 chr4 140878801 140878951 -14751169 + (TATG)n Simple_repeat Simple_repeat 3 154 0 9 1659 187 274 15 27 chr4 140879992 140880081 -14750039 - MIRc SINE MIR -32 176 91 9 1659 509 122 44 19 chr4 140880382 140880541 -14749579 + (TG)n Simple_repeat Simple_repeat 1 163 0 9 1659 377 277 19 32 chr4 140882636 140882751 -14747369 - MIRc SINE MIR -92 176 63 9 1659 192 40 0 0 chr4 140883296 140883321 -14746799 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 9 1659 480 35 0 0 chr4 140883672 140883730 -14746390 + (CCAA)n Simple_repeat Simple_repeat 4 61 0 9 1659 312 260 139 37 chr4 140883734 140883842 -14746278 - B1_Mm SINE Alu -6 141 23 9 1659 300 324 43 35 chr4 140883868 140883983 -14746137 + B4 SINE B4 43 158 -134 9 1659 24 0 0 0 chr4 140884985 140885009 -14745111 + AT_rich Low_complexity Low_complexity 1 24 0 9 1659 23 0 0 0 chr4 140885221 140885244 -14744876 + AT_rich Low_complexity Low_complexity 1 23 0 9 1659 396 0 0 0 chr4 140885445 140885489 -14744631 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1659 230 315 33 11 chr4 140885689 140885779 -14744341 - MIRm SINE MIR -125 151 60 9 1659 281 286 124 9 chr4 140885749 140885862 -14744258 - MIR3 SINE MIR -4 204 79 9 1659 263 196 91 71 chr4 140886187 140886286 -14743834 - L2 LINE L2 -509 2910 2810 9 1659 1207 42 21 0 chr4 140886698 140886840 -14743280 - B1_Mus2 SINE Alu 0 147 3 9 1659 350 289 9 76 chr4 140887198 140887303 -14742817 - RSINE1 SINE B4 0 165 68 9 1659 375 323 112 5 chr4 140887437 140887661 -14742459 + L1MC3 LINE L1 6833 7080 -802 9 1659 576 204 18 9 chr4 140887661 140887770 -14742350 + PB1D10 SINE Alu 1 110 -7 9 1659 375 323 86 61 chr4 140887770 140887895 -14742225 + L1MC3 LINE L1 7053 7177 -608 9 1659 738 224 114 6 chr4 140887910 140888085 -14742035 + B3A SINE B2 5 198 0 9 1659 604 181 55 8 chr4 140888088 140888216 -14741904 - B1_Mus2 SINE Alu 0 147 14 9 1659 435 185 171 32 chr4 140888696 140888819 -14741301 + ID_B1 SINE B4 84 223 -1 9 1659 399 301 24 60 chr4 140890070 140890236 -14739884 - ID_B1 SINE B4 -64 160 1 9 1659 216 298 0 5 chr4 140890316 140890399 -14739721 - MIRc SINE MIR -114 154 69 9 1659 387 0 0 0 chr4 140891097 140891140 -14738980 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1659 459 0 0 0 chr4 140891464 140891515 -14738605 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1659 1235 22 0 0 chr4 140892728 140892867 -14737253 + B1_Mus1 SINE Alu 4 142 -6 9 1659 270 0 0 0 chr4 140892869 140892899 -14737221 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 1659 262 239 0 0 chr4 140892918 140892964 -14737156 - ID4 SINE ID 0 83 38 9 1659 1637 37 5 0 chr4 140892983 140893174 -14736946 - B2_Mm1a SINE B2 -1 192 1 9 1659 282 272 122 58 chr4 140893180 140893209 -14736911 - B2_Mm1a SINE B2 -4 189 161 9 1659 252 0 0 0 chr4 140893209 140893237 -14736883 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1659 779 223 0 0 chr4 140893240 140893379 -14736741 - RSINE1 SINE B4 -19 146 8 9 1659 1140 8 0 0 chr4 140893393 140893522 -14736598 + (TTCCC)n Simple_repeat Simple_repeat 4 132 0 9 1659 284 240 97 80 chr4 140893535 140893648 -14736472 - PB1D10 SINE Alu 0 117 3 9 1659 905 69 5 64 chr4 140895044 140895231 -14734889 + (TG)n Simple_repeat Simple_repeat 2 177 0 9 1659 416 250 182 33 chr4 140895650 140895909 -14734211 - RMER20B LTR ERVK -223 404 109 9 1659 2230 231 121 11 chr4 140896049 140896704 -14733416 - MERVK26-int LTR ERVK -1144 5775 5049 9 1659 248 283 16 24 chr4 140896817 140896940 -14733180 + CT-rich Low_complexity Low_complexity 3 124 0 9 1659 516 280 89 29 chr4 140897170 140897416 -14732704 - RMER20B LTR ERVK -268 359 99 9 1659 203 148 0 85 chr4 140897523 140897582 -14732538 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 9 1659 305 309 92 46 chr4 140897585 140897631 -14732489 + L1M4b LINE L1 1760 1812 -5522 9 1659 333 350 12 37 chr4 140897631 140897794 -14732326 + RSINE1 SINE B4 3 161 -4 9 1659 1229 48 0 0 chr4 140897799 140897945 -14732175 + B1_Mus2 SINE Alu 2 147 0 9 1659 305 309 92 46 chr4 140897945 140898065 -14732055 + L1M4b LINE L1 1818 1940 -5394 9 1659 801 178 0 0 chr4 140898065 140898217 -14731903 + GA-rich Low_complexity Low_complexity 2 153 0 9 1659 183 80 0 0 chr4 140898268 140898293 -14731827 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 9 1659 592 238 27 26 chr4 140898313 140898463 -14731657 - ID_B1 SINE B4 -1 223 83 9 1659 276 286 58 35 chr4 140898565 140898652 -14731468 + MER20 DNA MER1_type 2 90 -129 9 1659 209 33 33 0 chr4 140898734 140898764 -14731356 + (TGG)n Simple_repeat Simple_repeat 2 32 0 9 1659 541 195 15 23 chr4 140898764 140898895 -14731225 + B1_Mus1 SINE Alu 19 148 0 9 1659 1150 95 0 0 chr4 140898898 140899046 -14731074 + B1_Mus1 SINE Alu 1 148 0 9 1659 249 159 0 0 chr4 140899046 140899090 -14731030 + A-rich Low_complexity Low_complexity 1 44 0 9 1659 364 170 47 11 chr4 140899103 140899302 -14730818 + (CA)n Simple_repeat Simple_repeat 1 206 0 9 1659 327 23 23 0 chr4 140899302 140899346 -14730774 + HAL1-3A_ME LINE L1 1976 2020 -838 9 1659 1100 45 37 0 chr4 140900052 140900186 -14729934 - B1_Mm SINE Alu -8 139 1 9 1659 342 100 0 0 chr4 140900210 140900260 -14729860 - HAL1-3A_ME LINE L1 -835 2023 1974 9 1659 531 206 0 0 chr4 140900316 140900481 -14729639 + (TG)n Simple_repeat Simple_repeat 2 166 0 1 1659 215 230 21 7 chr4 140900530 140900670 -14729450 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1659 230 240 15 15 chr4 140900709 140900840 -14729280 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 1659 324 291 70 38 chr4 140900876 140901033 -14729087 - RSINE1 SINE B4 0 165 4 1 1659 337 256 47 0 chr4 140901045 140901131 -14728989 - PB1D7 SINE Alu -10 110 21 1 1659 670 235 66 0 chr4 140901189 140901385 -14728735 - L1M4 LINE L1 -569 5605 5396 1 1659 278 275 36 36 chr4 140901392 140901462 -14728658 - MLT1A LTR MaLR -13 361 292 1 1659 471 271 39 0 chr4 140901462 140901591 -14728529 + RSINE1 SINE B4 3 136 -29 1 1659 1421 56 78 0 chr4 140901812 140901830 -14728290 - B2_Mm1t SINE B2 0 193 176 1 1659 330 26 0 0 chr4 140901830 140901869 -14728251 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1659 1421 56 78 0 chr4 140901869 140902029 -14728091 - B2_Mm1t SINE B2 -18 175 2 1 1659 844 163 7 14 chr4 140902039 140902182 -14727938 - B1_Mur3 SINE Alu -7 142 1 1 1659 301 289 0 91 chr4 140902198 140902297 -14727823 - ID_B1 SINE B4 -55 169 80 1 1660 956 118 0 9 chr4 140902463 140902693 -14727427 + (CA)n Simple_repeat Simple_repeat 1 227 0 1 1660 937 191 10 26 chr4 140902723 140902916 -14727204 + B3 SINE B2 2 191 -25 1 1660 933 264 5 9 chr4 140902949 140903159 -14726961 + B3 SINE B2 3 211 -5 1 1660 360 0 0 0 chr4 140903171 140903211 -14726909 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1660 349 305 102 49 chr4 140903472 140903804 -14726316 - L2b LINE L2 -14 3361 2993 1 1660 583 286 153 56 chr4 140904915 140905293 -14724827 - MER90a LTR ERV1 -80 534 120 1 1660 242 214 42 14 chr4 140905560 140905631 -14724489 + MIR SINE MIR 88 160 -102 1 1660 254 308 57 9 chr4 140906403 140906508 -14723612 + MIRc SINE MIR 30 139 -129 1 1660 211 269 125 25 chr4 140906518 140906598 -14723522 + B4 SINE B4 1 88 -204 1 1660 611 238 23 29 chr4 140906542 140906712 -14723408 + B3A SINE B2 33 202 -14 1 1660 860 144 14 14 chr4 140906783 140906924 -14723196 + B1_Mur3 SINE Alu 7 147 -2 1 1660 1280 182 137 13 chr4 140907890 140908196 -14721924 + MTC LTR MaLR 70 413 -8 1 1660 989 169 87 34 chr4 140908248 140908456 -14721664 - URR1A DNA MER1_type 0 226 8 1 1660 216 254 42 14 chr4 140910103 140910175 -14719945 + MIR3 SINE MIR 81 154 -54 1 1660 1336 36 30 7 chr4 140910434 140911039 -14719081 + (TCTA)n Simple_repeat Simple_repeat 1 619 0 1 1660 1560 43 32 0 chr4 140911049 140911236 -14718884 - B2_Mm1a SINE B2 0 193 1 1 1660 1384 97 5 0 chr4 140911676 140911862 -14718258 - B2_Mm1t SINE B2 -6 187 1 1 1660 1353 85 17 0 chr4 140911985 140912161 -14717959 + B2_Mm2 SINE B2 2 180 -15 1 1660 1285 27 0 0 chr4 140912209 140912356 -14717764 + B1_Mus2 SINE Alu 1 147 0 1 1660 582 289 80 60 chr4 140913083 140913148 -14716972 - ID_B1 SINE B4 -19 205 150 1 1660 1029 182 10 15 chr4 140913148 140913343 -14716777 - B2_Mm2 SINE B2 -1 194 1 1 1660 582 289 80 60 chr4 140913343 140913476 -14716644 - ID_B1 SINE B4 -75 149 3 1 1660 251 77 0 49 chr4 140913728 140913769 -14716351 + B2_Mm2 SINE B2 1 39 -156 1 1660 407 154 77 0 chr4 140913770 140913848 -14716272 - RLTR28 LTR ERVL 0 524 441 1 1660 410 141 0 82 chr4 140913852 140913937 -14716183 + ORR1A4 LTR MaLR 1 78 -248 1 1660 1545 144 21 33 chr4 140913916 140914267 -14715853 + ORR1A4 LTR MaLR 8 353 -41 1 1660 1091 53 30 0 chr4 140914267 140914400 -14715720 + B1_Mus1 SINE Alu 2 138 -10 1 1660 189 0 0 0 chr4 140914400 140914421 -14715699 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1660 1781 162 122 8 chr4 140914425 140914785 -14715335 + RMER15 LTR ERVL 175 575 0 1 1660 487 208 141 23 chr4 140915374 140915502 -14714618 - B1F1 SINE Alu -2 147 5 1 1660 25 0 0 0 chr4 140915513 140915538 -14714582 + AT_rich Low_complexity Low_complexity 1 25 0 1 1660 195 146 0 0 chr4 140915743 140915784 -14714336 + (CAGGG)n Simple_repeat Simple_repeat 3 43 0 1 1660 330 313 32 45 chr4 140917028 140917182 -14712938 - MIRc SINE MIR -4 264 113 1 1660 480 260 69 57 chr4 140917889 140918048 -14712072 - MER58A DNA MER1_type -28 196 36 1 1660 238 87 43 0 chr4 140918229 140918275 -14711845 + (TGGGGG)n Simple_repeat Simple_repeat 3 50 0 1 1660 702 0 0 0 chr4 140919902 140919980 -14710140 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 1660 437 243 29 0 chr4 140920444 140920547 -14709573 - RMER15 LTR ERVL -65 510 405 1 1660 267 296 14 0 chr4 140922411 140922482 -14707638 - MER2B DNA MER2_type -67 269 198 1 1660 691 174 0 0 chr4 140922491 140922606 -14707514 - ID_B1 SINE B4 -1 223 109 1 1660 432 0 0 0 chr4 140923136 140923184 -14706936 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1660 483 240 9 9 chr4 140923423 140923528 -14706592 + RSINE1 SINE B4 2 106 -59 1 1660 1097 95 0 20 chr4 140923607 140923757 -14706363 + B1_Mus1 SINE Alu 2 148 0 1 1660 243 88 0 0 chr4 140923757 140923791 -14706329 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1660 26 82 0 0 chr4 140923989 140924050 -14706070 + GC_rich Low_complexity Low_complexity 1 61 0 1 1660 21 0 0 0 chr4 140924272 140924293 -14705827 + GC_rich Low_complexity Low_complexity 1 21 0 1 1660 213 154 0 0 chr4 140924741 140924780 -14705340 + C-rich Low_complexity Low_complexity 3 41 0 1 1660 475 208 66 0 chr4 140925038 140925144 -14704976 + ID_B1 SINE B4 109 221 -3 1 1660 1201 68 0 0 chr4 140925172 140925318 -14704802 + B1_Mm SINE Alu 2 147 0 1 1660 180 0 0 0 chr4 140925318 140925338 -14704782 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1660 360 293 0 25 chr4 140927161 140927280 -14702840 - PB1D7 SINE Alu -1 119 4 1 1660 1045 214 5 36 chr4 140927293 140927516 -14702604 - ID_B1 SINE B4 0 224 9 1 1660 331 343 160 0 chr4 140928295 140928464 -14701656 + MIRb SINE MIR 60 255 -13 1 1660 206 267 0 0 chr4 140929427 140929472 -14700648 + L3b LINE CR1 240 284 -198 1 1660 1237 55 0 0 chr4 140929522 140929668 -14700452 - B1_Mus2 SINE Alu 0 147 2 1 1660 303 178 48 29 chr4 140930387 140930491 -14699629 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 1660 420 290 24 24 chr4 140930491 140930618 -14699502 - B1F SINE Alu -20 129 3 1 1660 1399 62 22 0 chr4 140930633 140930812 -14699308 - B2_Mm2 SINE B2 -11 184 2 1 1660 1233 165 45 0 chr4 140930841 140931041 -14699079 - B3 SINE B2 -7 209 1 1 1660 560 27 27 0 chr4 140931064 140931137 -14698983 + (ATGTG)n Simple_repeat Simple_repeat 1 75 0 1 1660 252 0 0 0 chr4 140931137 140931165 -14698955 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1660 423 288 0 48 chr4 140931165 140931289 -14698831 - RSINE1 SINE B4 0 165 48 1 1660 1146 187 78 133 chr4 140931345 140931727 -14698393 + ORR1D1 LTR MaLR 14 374 0 1 1660 310 304 0 0 chr4 140931960 140932029 -14698091 + ID4_ SINE ID 3 71 -12 1 1660 217 300 38 0 chr4 140932663 140932743 -14697377 - L2b LINE L2 -1 3374 3292 1 1660 692 259 124 101 chr4 140932745 140932950 -14697170 + B4 SINE B4 1 219 -73 1 1660 1139 95 0 0 chr4 140932950 140933098 -14697022 + B1_Mus1 SINE Alu 1 148 0 1 1660 692 259 124 101 chr4 140933098 140933150 -14696970 + B4 SINE B4 220 264 -28 1 1660 336 135 0 0 chr4 140933168 140933242 -14696878 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1660 863 132 29 14 chr4 140933359 140933497 -14696623 + B1_Mus2 SINE Alu 1 140 -7 1 1660 405 0 0 0 chr4 140933498 140933543 -14696577 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 1 1660 949 199 83 5 chr4 140933544 140933736 -14696384 - B3 SINE B2 -5 211 5 1 1660 595 168 0 0 chr4 140933737 140933838 -14696282 - B1_Mur4 SINE Alu -43 107 7 1 1660 784 147 7 68 chr4 140933862 140934008 -14696112 + B1_Mur1 SINE Alu 12 148 -1 1 1660 234 333 96 11 chr4 140934035 140934129 -14695991 + PB1D10 SINE Alu 5 106 -11 1 1660 1349 87 48 5 chr4 140934129 140934315 -14695805 + B2_Mm2 SINE B2 1 194 -1 1 1660 185 0 0 39 chr4 140934374 140934400 -14695720 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1660 550 276 6 19 chr4 140934402 140934574 -14695546 - ID_B1 SINE B4 -8 216 2 1 1660 958 128 13 33 chr4 140934612 140934765 -14695355 + B1_Mur4 SINE Alu 1 150 0 1 1660 1327 111 0 16 chr4 140934781 140934973 -14695147 + B2_Mm1a SINE B2 2 190 -3 1 1660 307 280 69 10 chr4 140934973 140935074 -14695046 + L1M4b LINE L1 1844 1950 -5384 1 1660 224 256 84 12 chr4 140935122 140935205 -14694915 - PB1 SINE Alu -22 105 17 1 1660 234 0 0 0 chr4 140935228 140935254 -14694866 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1660 1170 62 0 33 chr4 140935254 140935394 -14694726 - B1_Mus1 SINE Alu -10 138 2 1 1660 345 298 195 6 chr4 140935394 140935563 -14694557 - L1M2 LINE L1 -1819 4324 4124 1 1660 261 0 0 0 chr4 140936152 140936181 -14693939 + (CCCCG)n Simple_repeat Simple_repeat 4 32 0 1 1660 237 265 119 30 chr4 140936849 140936950 -14693170 - LTR16A1 LTR ERVL -3 453 344 1 1660 241 330 40 63 chr4 140939106 140939232 -14690888 - MIRb SINE MIR -105 157 35 1 1660 1362 78 5 22 chr4 140941635 140941819 -14688301 + B2_Mm2 SINE B2 1 181 -14 1 1660 216 0 0 0 chr4 140941827 140941851 -14688269 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1660 1071 68 30 0 chr4 140941854 140941987 -14688133 + B1_Mus1 SINE Alu 2 138 -10 1 1660 898 178 7 0 chr4 140942027 140942173 -14687947 - B1_Mur2 SINE Alu 0 149 3 1 1660 813 218 104 0 chr4 140942174 140942367 -14687753 - B3 SINE B2 -1 215 3 1 1660 477 175 36 7 chr4 140942513 140942651 -14687469 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1660 507 145 45 23 chr4 140942669 140942845 -14687275 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1660 262 171 14 54 chr4 140942849 140942923 -14687197 + (TATG)n Simple_repeat Simple_repeat 3 73 0 1 1660 829 206 77 48 chr4 140943400 140943609 -14686511 - B3 SINE B2 -1 215 1 1 1660 301 272 40 17 chr4 140943823 140943942 -14686178 - MIR SINE MIR -54 208 80 1 1660 699 122 7 160 chr4 140944289 140944506 -14685614 - B2_Mm2 SINE B2 -1 194 1 1 1660 1321 76 47 0 chr4 140944549 140944721 -14685399 - B2_Mm2 SINE B2 -14 181 2 1 1660 258 277 144 14 chr4 140944721 140944867 -14685253 - MTEb LTR MaLR -197 182 3 1 1660 262 268 45 126 chr4 140945526 140945642 -14684478 + MT2B LTR ERVL 55 152 -449 1 1660 690 159 15 38 chr4 140945642 140945773 -14684347 + B1_Mus2 SINE Alu 1 128 -19 1 1660 266 125 0 20 chr4 140945783 140945832 -14684288 + (AGGGGG)n Simple_repeat Simple_repeat 2 49 0 1 1660 486 297 16 93 chr4 140946593 140946607 -14683513 - B4 SINE B4 -12 280 269 1 1660 279 79 0 0 chr4 140946607 140946645 -14683475 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1660 486 297 16 93 chr4 140946645 140946671 -14683449 - B4 SINE B4 -24 268 243 1 1660 1679 42 0 0 chr4 140946671 140946863 -14683257 - B2_Mm1a SINE B2 0 193 2 1 1660 486 297 16 93 chr4 140946863 140947003 -14683117 - B4 SINE B4 -50 242 113 1 1660 1088 44 73 0 chr4 140949344 140949481 -14680639 + B1_Mus1 SINE Alu 2 148 0 1 1660 405 0 0 0 chr4 140949987 140950032 -14680088 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1660 407 106 15 0 chr4 140950115 140950181 -14679939 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 1 1660 307 304 61 18 chr4 140950181 140950295 -14679825 + HAL1-3A_ME LINE L1 2284 2402 -456 1 1660 481 184 0 17 chr4 140951178 140951294 -14678826 + CT-rich Low_complexity Low_complexity 3 116 0 1 1660 519 17 0 0 chr4 140951768 140951828 -14678292 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1660 225 237 211 0 chr4 140952649 140952765 -14677355 + MIR SINE MIR 27 163 -99 1 1660 393 311 26 0 chr4 140952916 140953067 -14677053 - MIRb SINE MIR -99 169 15 1 1660 352 346 0 11 chr4 140955184 140955307 -14674813 + PB1 SINE Alu 3 124 -3 1 1660 489 110 0 0 chr4 140955332 140955405 -14674715 + (TTA)n Simple_repeat Simple_repeat 3 75 0 1 1660 180 152 141 78 chr4 140955426 140955490 -14674630 - L2 LINE L2 -474 2945 2878 1 1660 504 233 19 0 chr4 140955512 140955615 -14674505 - PB1D10 SINE Alu -8 109 5 1 1660 326 222 16 14 chr4 140955664 140955742 -14674378 + B3A SINE B2 1 79 -116 1 1660 30 27 0 0 chr4 140955863 140955900 -14674220 + AT_rich Low_complexity Low_complexity 1 37 0 1 1660 249 108 0 0 chr4 140955981 140956018 -14674102 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1660 279 333 11 0 chr4 140956319 140956409 -14673711 - PB1 SINE Alu -34 93 3 1 1660 1350 222 56 74 chr4 140956409 140956619 -14673501 - MTD LTR MaLR -14 405 190 1 1660 207 0 0 0 chr4 140956619 140956642 -14673478 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1660 1350 220 56 78 chr4 140956642 140956729 -14673391 - MTD LTR MaLR -230 189 109 1 1660 1718 31 0 0 chr4 140956729 140956922 -14673198 + B2_Mm1t SINE B2 1 193 0 1 1660 1350 220 56 78 chr4 140956922 140957044 -14673076 - MTD LTR MaLR -311 108 6 1 1660 602 144 0 55 chr4 140957049 140957159 -14672961 + B1_Mur3 SINE Alu 45 148 -1 1 1660 841 262 147 45 chr4 140957186 140957787 -14672333 - MTD-int LTR MaLR -465 1498 586 1 1660 422 306 65 39 chr4 140957787 140958018 -14672102 - L1M2 LINE L1 -1297 4846 4610 1 1660 282 53 35 35 chr4 140958020 140958078 -14672042 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1 1660 318 210 60 112 chr4 140958086 140958220 -14671900 + MT2B LTR ERVL 152 278 -323 1 1660 726 176 8 8 chr4 140958109 140958241 -14671879 + B1_Mus2 SINE Alu 10 141 -6 1 1660 705 12 0 0 chr4 140958270 140958352 -14671768 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1660 614 229 14 35 chr4 140958362 140958507 -14671613 - B3A SINE B2 -51 147 6 1 1660 447 275 55 27 chr4 140958521 140958704 -14671416 - L1M2 LINE L1 -1519 4624 4437 1 1660 278 196 0 0 chr4 140958712 140958763 -14671357 - B1_Mur4 SINE Alu -88 62 12 1 1660 210 288 76 0 chr4 140958763 140958778 -14671342 - B4A SINE B4 -146 146 76 1 1660 1264 48 0 0 chr4 140958804 140958951 -14671169 + B1_Mus2 SINE Alu 1 147 0 1 1660 261 0 0 0 chr4 140959029 140959058 -14671062 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 1660 319 297 0 0 chr4 140959088 140959162 -14670958 - ID4_ SINE ID -7 76 3 1 1660 510 172 210 25 chr4 140959275 140959394 -14670726 - B1_Mur1 SINE Alu 0 149 9 1 1660 639 103 0 0 chr4 140959419 140959516 -14670604 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 1 1660 297 265 107 29 chr4 140961332 140961495 -14668625 - MIRm SINE MIR -15 261 86 1 1660 291 282 12 49 chr4 140961884 140961966 -14668154 + ID4_ SINE ID 1 79 -4 1 1660 431 277 26 24 chr4 140962703 140962912 -14667208 - MIRb SINE MIR -33 229 29 1 1660 515 233 63 63 chr4 140964812 140964954 -14665166 + RSINE1 SINE B4 24 165 0 1 1660 312 211 0 0 chr4 140964954 140965025 -14665095 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1660 1635 37 5 0 chr4 140965939 140966130 -14663990 + B2_Mm1t SINE B2 2 193 0 1 1660 534 204 287 85 chr4 140966819 140966922 -14663198 + URR1A DNA MER1_type 1 114 -112 1 1660 1407 71 27 0 chr4 140966922 140967106 -14663014 + B2_Mm2 SINE B2 2 190 -5 1 1660 534 204 287 85 chr4 140967106 140967190 -14662930 + URR1A DNA MER1_type 115 226 0 1 1660 193 130 0 61 chr4 140967798 140967847 -14662273 + C-rich Low_complexity Low_complexity 5 50 0 1 1660 850 118 32 83 chr4 140968375 140968504 -14661616 + B1_Mur4 SINE Alu 1 125 -25 1 1660 1274 115 16 16 chr4 140968504 140968689 -14661431 - B2_Mm2 SINE B2 -9 186 2 1 1660 850 118 32 83 chr4 140968689 140968716 -14661404 + B1_Mur4 SINE Alu 126 149 -1 1 1660 1120 101 0 0 chr4 140968762 140968910 -14661210 + B1_Mus1 SINE Alu 1 148 0 1 1660 630 71 0 0 chr4 140968914 140968998 -14661122 + (GGAAA)n Simple_repeat Simple_repeat 4 87 0 1 1660 528 16 0 0 chr4 140968998 140969059 -14661061 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1 1660 564 264 106 34 chr4 140969178 140969386 -14660734 + RMER15 LTR ERVL 339 561 -14 1 1660 190 318 45 0 chr4 140969618 140969706 -14660414 + MIRc SINE MIR 85 176 -92 1 1660 187 307 45 11 chr4 140970193 140970282 -14659838 - MIRb SINE MIR -162 106 15 1 1660 326 271 21 10 chr4 140971322 140971419 -14658701 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 1660 191 354 0 12 chr4 140972479 140972562 -14657558 - MIRb SINE MIR -178 90 9 1 1660 744 200 0 0 chr4 140972688 140972868 -14657252 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1660 759 296 19 0 chr4 140973129 140973342 -14656778 + ID_B1 SINE B4 1 217 -7 1 1660 594 28 0 0 chr4 140974040 140974112 -14656008 + (TATG)n Simple_repeat Simple_repeat 2 73 0 1 1660 1385 97 11 0 chr4 140974125 140974311 -14655809 - B2_Mm1t SINE B2 -5 188 1 1 1660 1001 174 54 0 chr4 140974330 140974514 -14655606 + B3 SINE B2 2 195 -21 1 1660 747 221 77 6 chr4 140974519 140974701 -14655419 - B3A SINE B2 -1 197 3 1 1660 647 11 43 0 chr4 140974906 140974998 -14655122 + (TATG)n Simple_repeat Simple_repeat 2 97 0 1 1660 1151 168 24 10 chr4 140975000 140975205 -14654915 - B3 SINE B2 -8 208 1 1 1660 1225 34 0 7 chr4 140975232 140975380 -14654740 - B1_Mm SINE Alu 0 147 1 1 1660 336 301 138 14 chr4 140975523 140975661 -14654459 - Lx8 LINE L1 -356 7117 6963 1 1660 343 205 64 0 chr4 140975677 140975755 -14654365 - ID_B1 SINE B4 -7 217 135 1 1660 264 209 214 9 chr4 140975755 140975788 -14654332 - B1F1 SINE Alu 0 121 1 1 1660 188 292 27 143 chr4 140976248 140976360 -14653760 - L2a LINE L2 -38 3388 3290 1 1660 231 114 0 0 chr4 140977747 140977782 -14652338 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 1660 630 0 0 0 chr4 140980632 140980702 -14649418 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1660 276 185 0 0 chr4 140981530 140981584 -14648536 - MIRm SINE MIR -136 140 87 1 1660 184 122 24 24 chr4 140982148 140982190 -14647930 + G-rich Low_complexity Low_complexity 4 45 0 1 1660 300 379 38 0 chr4 140982351 140982483 -14647637 - MIRb SINE MIR -90 178 42 1 1660 596 257 29 0 chr4 140982811 140982947 -14647173 + ID_B1 SINE B4 84 223 -1 1 1660 204 243 127 14 chr4 140983070 140983141 -14646979 - MIR3 SINE MIR -48 160 82 1 1660 233 341 12 12 chr4 140983348 140983434 -14646686 + MIR SINE MIR 33 118 -144 1 1660 1068 199 258 77 chr4 140984165 140984478 -14645642 + MTD LTR MaLR 1 388 -31 1 1660 902 157 7 0 chr4 140984478 140984625 -14645495 - B1_Mur4 SINE Alu -1 149 2 1 1660 1068 199 258 77 chr4 140984625 140984664 -14645456 + MTD LTR MaLR 389 417 -2 1 1660 2214 216 70 99 chr4 140984685 140984932 -14645188 + MTD-int LTR MaLR 31 273 -985 1 1660 1213 55 0 7 chr4 140984932 140985079 -14645041 + B1_Mm SINE Alu 2 147 0 1 1660 2214 216 70 99 chr4 140985079 140985099 -14645021 + MTD-int LTR MaLR 274 301 -957 1 1660 706 157 17 17 chr4 140985099 140985216 -14644904 + PB1D9 SINE Alu 3 119 -1 1 1660 2214 216 70 99 chr4 140985216 140985673 -14644447 + MTD-int LTR MaLR 302 734 -524 1 1660 351 0 0 0 chr4 140985673 140985712 -14644408 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1660 243 0 0 0 chr4 140985712 140985738 -14644382 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1660 819 124 0 42 chr4 140986199 140986342 -14643778 - B1_Mus1 SINE Alu -1 147 11 1 1660 329 263 136 93 chr4 140986200 140986414 -14643706 - B4 SINE B4 -69 223 1 1 1660 208 359 13 0 chr4 140986420 140986498 -14643622 - MIR SINE MIR -102 160 82 1 1660 291 138 27 133 chr4 140986631 140986706 -14643414 + 4.5SRNA scRNA scRNA 20 86 -8 1 1660 872 51 8 0 chr4 140986645 140986763 -14643357 + B1_Mur4 SINE Alu 32 150 0 1 1660 231 36 0 0 chr4 140986769 140986797 -14643323 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1 1660 294 352 46 0 chr4 140986828 140986936 -14643184 + B1F2 SINE Alu 25 137 -12 1 1660 434 248 20 0 chr4 140987165 140987266 -14642854 - ID_B1 SINE B4 -28 196 94 1 1660 440 219 195 0 chr4 140987314 140987442 -14642678 - ID_B1 SINE B4 -2 222 70 1 1660 583 233 190 22 chr4 140987474 140987658 -14642462 - ID_B1 SINE B4 -8 216 2 1 1660 2106 162 58 68 chr4 140987919 140988247 -14641873 - RLTR28 LTR ERVL -11 513 197 1 1660 1221 41 0 13 chr4 140988247 140988396 -14641724 - B1_Mus2 SINE Alu 0 147 1 1 1660 2106 162 58 68 chr4 140988396 140988584 -14641536 - RLTR28 LTR ERVL -328 196 2 1 1660 213 226 19 0 chr4 140988873 140988926 -14641194 + C-rich Low_complexity Low_complexity 3 56 0 1 1660 469 238 24 16 chr4 140989416 140989540 -14640580 - RSINE1 SINE B4 0 165 41 1 1660 549 297 78 28 chr4 140989685 140989903 -14640217 + B4A SINE B4 1 229 -63 1 1660 629 106 257 0 chr4 140989903 140990016 -14640104 + B1_Mur4 SINE Alu 1 142 -8 1 1660 525 232 156 21 chr4 140990085 140990226 -14639894 + B3 SINE B2 57 216 0 1 1660 246 81 0 0 chr4 140990245 140990282 -14639838 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1660 1165 75 0 20 chr4 140990285 140990435 -14639685 - B1_Mus2 SINE Alu 0 147 1 1 1660 23 0 0 0 chr4 140990437 140990460 -14639660 + AT_rich Low_complexity Low_complexity 1 23 0 1 1660 978 157 0 0 chr4 140990470 140990617 -14639503 + B1_Mus1 SINE Alu 2 148 0 1 1660 224 308 95 42 chr4 140991077 140991106 -14639014 - ID_B1 SINE B4 -33 191 154 1 1660 276 102 0 0 chr4 140991106 140991155 -14638965 + (CAGA)n Simple_repeat Simple_repeat 1 49 0 1 1660 224 308 95 42 chr4 140991155 140991220 -14638900 - ID_B1 SINE B4 -71 153 92 1 1660 1347 68 22 6 chr4 140991221 140991399 -14638721 + B2_Mm2 SINE B2 1 181 -14 1 1660 306 172 0 33 chr4 140991431 140991491 -14638629 + B2_Mm2 SINE B2 47 104 -91 1 1660 1144 63 0 21 chr4 140992291 140992436 -14637684 - B1_Mus1 SINE Alu -6 142 1 1 1660 365 281 25 50 chr4 140992453 140992573 -14637547 - PB1D10 SINE Alu 0 117 1 1 1660 1987 220 40 21 chr4 140992584 140992791 -14637329 - RMER5 LTR ERV1 0 534 328 1 1660 1094 141 42 32 chr4 140992791 140992981 -14637139 + B2_Mm2 SINE B2 1 192 -3 1 1660 1987 220 40 21 chr4 140992981 140993242 -14636878 - RMER5 LTR ERV1 -207 327 57 1 1660 909 57 8 0 chr4 140993260 140993384 -14636736 - B1_Mus1 SINE Alu 0 148 24 1 1660 234 0 0 0 chr4 140993389 140993415 -14636705 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1660 261 0 0 0 chr4 140993415 140993443 -14636677 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1660 1085 67 20 0 chr4 140993445 140993595 -14636525 - B2_Mm2 SINE B2 -41 154 2 1 1660 297 120 0 20 chr4 140993616 140993667 -14636453 - B2_Mm2 SINE B2 -99 96 47 1 1660 690 132 0 0 chr4 140993770 140993876 -14636244 - B2_Mm2 SINE B2 -88 107 2 1 1660 252 0 0 0 chr4 140993914 140993942 -14636178 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1 1660 1034 84 28 0 chr4 140993953 140994096 -14636024 - B1_Mus2 SINE Alu 0 147 1 1 1660 404 372 88 31 chr4 140995255 140995516 -14634604 + MLT1E2 LTR MaLR 5 280 -347 1 1660 213 65 0 0 chr4 140995642 140995673 -14634447 + (CAGTT)n Simple_repeat Simple_repeat 3 33 0 1 1660 283 280 7 167 chr4 140995679 140995772 -14634348 - MER21B LTR ERV1 -174 689 601 1 1660 1362 89 15 20 chr4 140995772 140995967 -14634153 - B2_Mm2 SINE B2 0 195 2 1 1660 283 280 7 167 chr4 140995967 140996023 -14634097 - MER21B LTR ERV1 -263 600 564 1 1660 806 51 110 0 chr4 140996024 140996142 -14633978 - B1_Mus2 SINE Alu 0 147 17 1 1660 401 285 58 0 chr4 140996027 140996164 -14633956 - B4A SINE B4 -68 224 80 1 1660 1439 56 33 0 chr4 140996505 140996685 -14633435 + B2_Mm1t SINE B2 1 186 -7 1 1660 211 184 0 0 chr4 140996757 140996793 -14633327 - B3 SINE B2 -117 99 64 1 1660 1931 152 62 10 chr4 140996793 140997197 -14632923 + RMER10A LTR ERVL 1 425 -17 1 1660 684 0 0 0 chr4 140997206 140997282 -14632838 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1 1660 242 172 51 179 chr4 140997295 140997333 -14632787 - B3A SINE B2 -130 68 41 1 1660 1067 29 64 29 chr4 140997333 140997473 -14632647 - B1_Mm SINE Alu -1 146 2 1 1660 242 172 51 179 chr4 140997473 140997512 -14632608 - B3A SINE B2 -158 40 1 1 1660 235 247 9 184 chr4 140997536 140997568 -14632552 - PB1D10 SINE Alu -27 90 63 1 1660 498 193 91 9 chr4 140997568 140997678 -14632442 + PB1D9 SINE Alu 2 120 0 1 1660 235 247 9 184 chr4 140997678 140997754 -14632366 - PB1D10 SINE Alu -55 62 1 1 1660 1220 43 0 0 chr4 140997969 140998110 -14632010 - B1_Mus2 SINE Alu -6 141 1 1 1660 289 195 11 128 chr4 140998113 140998207 -14631913 - RLTR33 LTR ERVK -148 530 448 1 1660 286 274 0 0 chr4 140998387 140998460 -14631660 - RLTR19C LTR ERVK -409 97 25 1 1660 1247 27 0 14 chr4 140998501 140998649 -14631471 - B1_Mus1 SINE Alu -1 147 2 1 1660 970 117 18 18 chr4 140998653 140998819 -14631301 - B2_Mm2 SINE B2 -2 193 28 1 1660 289 213 66 0 chr4 140999170 140999231 -14630889 - B1_Mur3 SINE Alu -84 65 1 1 1660 252 333 0 0 chr4 140999372 140999441 -14630679 - ID4_ SINE ID -13 70 2 1 1660 703 236 176 0 chr4 140999562 140999744 -14630376 - B3 SINE B2 0 216 3 1 1660 1155 126 16 0 chr4 140999809 141000000 -14630120 - RLTR8 LTR ERVK 0 365 172 1 1660 1326 47 0 0 chr4 141000000 141000171 -14629949 - RLTR8 LTR ERVK -194 171 1 1 1660 262 285 153 51 chr4 141000315 141000452 -14629668 + MIRb SINE MIR 112 262 -6 2 1660 36 40 0 0 chr4 141000823 141000873 -14629247 + GC_rich Low_complexity Low_complexity 1 50 0 3 1660 262 265 57 29 chr4 141001266 141001371 -14628749 + MIRb SINE MIR 116 223 -45 4 1660 917 128 15 0 chr4 141001861 141001994 -14628126 + B1_Mus1 SINE Alu 2 136 -12 5 1660 189 74 0 0 chr4 141001999 141002026 -14628094 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1660 215 224 68 17 chr4 141002195 141002254 -14627866 - RSINE1 SINE B4 -31 134 73 7 1660 244 294 94 71 chr4 141002233 141002445 -14627675 - B4 SINE B4 -58 234 18 8 1660 588 126 11 0 chr4 141002511 141002606 -14627514 - B1_Mur3 SINE Alu -13 136 41 9 1660 447 269 25 88 chr4 141002666 141002825 -14627295 + B1F SINE Alu 1 149 0 1 1660 732 185 6 82 chr4 141003345 141003504 -14626616 + B1_Mm SINE Alu 1 147 0 1 1660 369 255 17 86 chr4 141003591 141003707 -14626413 - PB1D7 SINE Alu -1 119 12 1 1660 595 238 42 7 chr4 141003770 141003914 -14626206 - B1_Mur2 SINE Alu 0 149 1 1 1660 387 0 0 0 chr4 141004138 141004181 -14625939 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1660 1175 88 0 0 chr4 141004185 141004345 -14625775 - B2_Mm2 SINE B2 -35 160 1 1 1660 181 190 23 23 chr4 141004944 141004987 -14625133 + MIRc SINE MIR 125 167 -101 1 1660 322 146 29 29 chr4 141005351 141005436 -14624684 + B1_Mur2 SINE Alu 11 95 -54 1 1660 1242 21 7 7 chr4 141005901 141006047 -14624073 - B1_Mus2 SINE Alu 0 147 2 1 1660 317 43 0 21 chr4 141006058 141006106 -14624014 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1660 900 34 8 0 chr4 141006106 141006223 -14623897 - B1_Mus2 SINE Alu -9 138 21 2 1660 366 200 131 19 chr4 141006229 141006336 -14623784 - B1F SINE Alu -1 148 30 2 1660 225 191 162 0 chr4 141006278 141006346 -14623774 - 4.5SRNA scRNA scRNA -6 88 10 2 1660 450 0 0 0 chr4 141006602 141006652 -14623468 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1660 969 193 94 0 chr4 141007005 141007197 -14622923 - B3 SINE B2 -3 213 4 2 1660 226 102 0 75 chr4 141007494 141007547 -14622573 + C-rich Low_complexity Low_complexity 4 52 0 2 1660 592 134 235 0 chr4 141007555 141007674 -14622446 - B1_Mus1 SINE Alu -1 147 1 2 1660 256 250 0 0 chr4 141007684 141007740 -14622380 - B1F2 SINE Alu -93 56 1 2 1660 592 224 115 0 chr4 141007757 141007913 -14622207 - B3 SINE B2 0 216 43 2 1660 586 181 150 0 chr4 141007957 141008084 -14622036 - B1_Mur4 SINE Alu -4 146 1 2 1660 469 246 27 0 chr4 141008090 141008200 -14621920 - PB1D10 SINE Alu 0 117 5 3 1660 218 326 0 50 chr4 141008649 141008749 -14621371 + C-rich Low_complexity Low_complexity 1 95 0 3 1660 329 222 0 0 chr4 141008750 141008813 -14621307 - RMER15 LTR ERVL -109 466 404 3 1660 407 219 254 6 chr4 141008830 141008995 -14621125 - Lx8 LINE L1 -284 7189 6984 3 1660 1224 286 61 55 chr4 141009058 141009568 -14620552 - Lx8 LINE L1 -618 6855 6343 3 1660 513 0 0 0 chr4 141009570 141009627 -14620493 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1660 272 157 39 0 chr4 141009627 141009678 -14620442 + L1_Rod LINE L1 5726 5778 -69 3 1660 224 299 50 114 chr4 141009873 141010092 -14620028 - MIR SINE MIR -41 221 17 3 1660 802 71 9 0 chr4 141010193 141010306 -14619814 - B1_Mus1 SINE Alu -1 147 34 3 1660 308 248 9 47 chr4 141010372 141010478 -14619642 - PB1D7 SINE Alu 0 120 19 3 1660 405 259 58 19 chr4 141010956 141011125 -14618995 - ID_B1 SINE B4 0 224 3 3 1660 471 118 0 0 chr4 141011276 141011352 -14618768 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1660 331 313 53 8 chr4 141011352 141011484 -14618636 - RSINE1 SINE B4 -24 141 4 4 1660 376 149 27 13 chr4 141011711 141011786 -14618334 - B1_Mus2 SINE Alu -1 146 71 4 1660 215 262 0 16 chr4 141012082 141012144 -14617976 + L2a LINE L2 3096 3156 -270 4 1660 240 279 80 23 chr4 141012444 141012532 -14617588 - MLT1A1 LTR MaLR -2 406 314 4 1660 396 269 11 11 chr4 141012565 141012659 -14617461 + ID_B1 SINE B4 130 223 -1 4 1660 301 255 53 0 chr4 141012731 141012825 -14617295 + B1F1 SINE Alu 1 99 -50 4 1660 1590 32 21 0 chr4 141012836 141013022 -14617098 - B2_Mm1a SINE B2 -2 191 2 4 1660 1503 63 5 20 chr4 141013026 141013221 -14616899 - B2_Mm2 SINE B2 -3 192 1 4 1660 376 109 0 5 chr4 141013249 141013314 -14616806 - B2_Mm2 SINE B2 -107 109 47 4 1660 1184 57 132 0 chr4 141013327 141013486 -14616634 - B2_Mm2 SINE B2 -14 181 2 5 1660 1224 27 0 27 chr4 141013514 141013664 -14616456 - B1_Mm SINE Alu 0 147 2 5 1660 369 0 0 0 chr4 141013911 141013952 -14616168 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1660 425 223 117 0 chr4 141015317 141015363 -14614757 + PB1D9 SINE Alu 2 48 -72 5 1660 234 0 0 0 chr4 141015363 141015389 -14614731 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 5 1660 425 223 117 0 chr4 141015389 141015440 -14614680 + PB1D9 SINE Alu 49 110 -10 5 1660 222 37 0 0 chr4 141015440 141015467 -14614653 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1660 738 236 50 15 chr4 141016106 141016304 -14613816 + URR1B DNA MER1_type 17 221 -4 5 1660 240 281 146 0 chr4 141016530 141016619 -14613501 - PB1D10 SINE Alu -1 116 15 5 1660 249 217 86 14 chr4 141018220 141018290 -14611830 - MIRc SINE MIR -92 176 102 5 1660 212 100 25 0 chr4 141024132 141024172 -14605948 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1660 306 73 0 0 chr4 141024256 141024297 -14605823 + (TGG)n Simple_repeat Simple_repeat 2 42 0 6 1660 301 177 32 0 chr4 141026872 141026934 -14603186 - RSINE1 SINE B4 -19 146 83 6 1660 1315 79 51 0 chr4 141027007 141027185 -14602935 - B2_Mm2 SINE B2 -8 187 1 6 1660 21 0 0 0 chr4 141027186 141027207 -14602913 + AT_rich Low_complexity Low_complexity 1 21 0 6 1660 197 211 18 0 chr4 141027525 141027582 -14602538 + G-rich Low_complexity Low_complexity 2 59 0 6 1660 194 276 25 38 chr4 141029303 141029382 -14600738 - MER5B DNA MER1_type -96 82 5 6 1660 211 217 0 48 chr4 141032338 141032401 -14597719 + CT-rich Low_complexity Low_complexity 6 65 0 6 1661 299 274 84 9 chr4 141035358 141035465 -14594655 + B1F2 SINE Alu 18 132 -17 6 1661 226 289 7 129 chr4 141035552 141035691 -14594429 - RLTR25A LTR ERVK -460 643 522 6 1661 522 200 55 16 chr4 141035604 141035731 -14594389 - B1F2 SINE Alu -16 133 2 6 1661 833 216 80 10 chr4 141035918 141036119 -14594001 + B3 SINE B2 1 215 -1 7 1661 534 78 22 0 chr4 141036125 141036215 -14593905 + L1_Mus3 LINE L1 6547 6638 0 7 1661 311 210 222 0 chr4 141036234 141036315 -14593805 + B1_Mur1 SINE Alu 50 148 -1 7 1661 780 100 11 7 chr4 141036337 141036472 -14593648 - B1_Mur4 SINE Alu 0 150 10 7 1661 430 224 262 32 chr4 141036509 141036730 -14593390 - B4A SINE B4 -19 273 2 7 1661 563 253 82 2 chr4 141036774 141036950 -14593170 + B3 SINE B2 9 198 0 7 1661 292 286 104 15 chr4 141037177 141037312 -14592808 - RSINE1 SINE B4 -12 153 7 7 1661 324 226 95 0 chr4 141037382 141037466 -14592654 + ID_B1 SINE B4 79 170 -54 7 1661 374 211 44 11 chr4 141037558 141037649 -14592471 + B1F1 SINE Alu 17 110 -39 7 1661 327 279 29 9 chr4 141037559 141037664 -14592456 + ID_B1 SINE B4 99 205 -19 7 1661 445 292 45 10 chr4 141038005 141038144 -14591976 + B1_Mur1 SINE Alu 2 132 -17 8 1661 252 0 0 0 chr4 141038145 141038173 -14591947 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1661 598 159 186 0 chr4 141038173 141038286 -14591834 + B1_Mus1 SINE Alu 2 135 -13 8 1661 351 0 0 0 chr4 141038294 141038333 -14591787 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1661 921 35 0 0 chr4 141038333 141038445 -14591675 + (GA)n Simple_repeat Simple_repeat 2 114 0 8 1661 329 280 39 39 chr4 141038636 141038740 -14591380 - PB1D7 SINE Alu -3 117 14 8 1661 710 226 0 46 chr4 141038779 141038932 -14591188 + B1_Mur2 SINE Alu 2 147 -2 8 1661 732 109 31 0 chr4 141039859 141039987 -14590133 - B1_Mm SINE Alu -4 143 12 8 1661 402 245 50 0 chr4 141040121 141040234 -14589886 + Lx6 LINE L1 6764 6881 -815 8 1661 310 241 44 108 chr4 141040202 141040360 -14589760 + Lx6 LINE L1 7058 7205 -255 8 1661 21 0 0 0 chr4 141040494 141040515 -14589605 + AT_rich Low_complexity Low_complexity 1 21 0 8 1661 432 0 0 0 chr4 141040735 141040783 -14589337 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1661 327 65 0 0 chr4 141041038 141041084 -14589036 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1661 211 278 27 14 chr4 141042001 141042074 -14588046 + ID4_ SINE ID 5 78 -5 9 1661 231 219 46 15 chr4 141042019 141042084 -14588036 + ID_B1 SINE B4 24 90 -134 9 1661 475 241 18 9 chr4 141042163 141042272 -14587848 - PB1D7 SINE Alu -10 110 1 9 1661 229 279 33 0 chr4 141042285 141042346 -14587774 - RSINE1 SINE B4 -17 148 86 9 1661 386 51 0 0 chr4 141042493 141042552 -14587568 - B2_Mm1a SINE B2 -8 185 127 9 1661 1325 94 5 16 chr4 141042584 141042768 -14587352 - B2_Mm2 SINE B2 -13 182 1 9 1661 1072 95 131 0 chr4 141042857 141043025 -14587095 - B2_Mm2 SINE B2 -5 190 1 9 1661 607 259 53 1 chr4 141043170 141043369 -14586751 - B3A SINE B2 -2 214 1 9 1661 207 0 0 0 chr4 141044227 141044250 -14585870 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1661 1114 88 7 7 chr4 141044385 141044534 -14585586 + B1_Mur3 SINE Alu 1 149 0 1 1661 1030 190 53 19 chr4 141044698 141044907 -14585213 - B3 SINE B2 0 216 1 1 1661 333 187 40 99 chr4 141044997 141045025 -14585095 - B1F2 SINE Alu 0 149 128 1 1661 522 240 144 12 chr4 141045025 141045198 -14584922 + B3A SINE B2 3 198 0 1 1661 333 187 40 99 chr4 141045198 141045270 -14584850 - B1F2 SINE Alu -22 127 55 1 1661 619 267 126 16 chr4 141045283 141045442 -14584678 + B3 SINE B2 1 181 -35 1 1661 585 0 0 0 chr4 141045442 141045507 -14584613 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1661 619 267 126 16 chr4 141045507 141045530 -14584590 + B3 SINE B2 182 203 -13 1 1661 516 222 20 112 chr4 141046156 141046308 -14583812 - B1_Mur2 SINE Alu -4 145 8 1 1661 330 262 0 77 chr4 141046232 141046323 -14583797 - MT2B LTR ERVL -361 240 157 1 1661 481 244 16 39 chr4 141046438 141046566 -14583554 + B1_Mus1 SINE Alu 12 136 -12 1 1661 351 0 0 0 chr4 141046567 141046606 -14583514 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1661 665 194 241 12 chr4 141046761 141046923 -14583197 + B3 SINE B2 1 199 -17 1 1661 434 135 247 10 chr4 141047237 141047334 -14582786 + PB1D9 SINE Alu 1 120 0 1 1661 669 244 33 131 chr4 141047357 141047602 -14582518 + ID_B1 SINE B4 4 224 0 1 1661 335 296 37 9 chr4 141047606 141047715 -14582405 + PB1D10 SINE Alu 1 112 -5 1 1661 271 294 49 130 chr4 141047893 141047926 -14582194 + B4A SINE B4 66 186 -106 1 1661 743 207 7 0 chr4 141047926 141048066 -14582054 + B1F SINE Alu 9 149 0 1 1661 271 294 49 130 chr4 141048066 141048077 -14582043 + B4A SINE B4 187 234 -58 1 1661 255 288 79 16 chr4 141048166 141048293 -14581827 + MTEb LTR MaLR 1 135 -244 1 1661 582 229 57 30 chr4 141048556 141048749 -14581371 - B3A SINE B2 -4 212 16 1 1661 399 41 0 0 chr4 141049637 141049686 -14580434 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1661 298 271 8 12 chr4 141050578 141050678 -14579442 + PB1D10 SINE Alu 21 119 -1 1 1661 1299 128 37 0 chr4 141051136 141051323 -14578797 - B2_Mm2 SINE B2 0 195 2 1 1661 1116 61 0 0 chr4 141051339 141051486 -14578634 - B2_Mm2 SINE B2 -47 148 2 1 1661 285 286 163 23 chr4 141051784 141051913 -14578207 - RSINE1 SINE B4 -17 148 2 1 1661 355 221 221 0 chr4 141052482 141052586 -14577534 - RSINE1 SINE B4 -31 134 8 1 1661 219 69 0 0 chr4 141052591 141052620 -14577500 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 1 1661 927 159 7 0 chr4 141052666 141052811 -14577309 - B1_Mur4 SINE Alu -1 149 4 1 1661 247 238 63 0 chr4 141052812 141052875 -14577245 - B1_Mus2 SINE Alu -7 140 74 1 1661 251 356 57 9 chr4 141053092 141053197 -14576923 - PB1D10 SINE Alu -6 111 2 1 1661 298 296 0 0 chr4 141053199 141053270 -14576850 - ID_B1 SINE B4 0 224 154 1 1661 667 175 65 7 chr4 141053643 141053781 -14576339 - B1_Mus2 SINE Alu 0 147 2 1 1661 454 254 0 58 chr4 141053976 141054097 -14576023 - PB1D9 SINE Alu -5 115 2 1 1661 220 309 29 0 chr4 141054169 141054237 -14575883 + RSINE1 SINE B4 77 146 -19 1 1661 326 320 49 102 chr4 141054332 141054558 -14575562 - B3 SINE B2 -1 215 2 1 1661 1091 228 202 82 chr4 141054561 141055035 -14575085 + MT2A LTR ERVL 3 533 0 1 1661 322 277 60 0 chr4 141055401 141055484 -14574636 + PB1D10 SINE Alu 30 117 0 1 1661 682 296 97 48 chr4 141055484 141055917 -14574203 + L1MB3 LINE L1 5509 5962 -221 1 1661 498 216 47 25 chr4 141056038 141056234 -14573886 - B4A SINE B4 -43 249 2 1 1661 899 249 44 0 chr4 141056279 141056484 -14573636 + B3 SINE B2 3 216 0 1 1661 278 270 70 0 chr4 141056501 141056601 -14573519 + L1MB3 LINE L1 6025 6131 -52 1 1661 344 194 14 0 chr4 141056995 141057067 -14573053 - ID4_ SINE ID -9 74 2 1 1661 375 237 39 49 chr4 141057538 141057640 -14572480 + PB1D7 SINE Alu 18 118 -2 1 1661 1099 62 14 0 chr4 141057736 141057880 -14572240 + B1_Mus1 SINE Alu 1 146 -2 1 1661 270 77 0 0 chr4 141057885 141057924 -14572196 + B3 SINE B2 1 39 -177 1 1661 439 228 59 0 chr4 141058145 141058246 -14571874 + PB1D10 SINE Alu 11 117 0 1 1661 1741 11 0 0 chr4 141058478 141058669 -14571451 - B2_Mm1a SINE B2 -1 192 2 1 1661 2043 152 38 27 chr4 141059366 141059731 -14570389 - ORR1D1 LTR MaLR 0 374 6 1 1661 413 187 10 52 chr4 141059733 141059824 -14570296 - PB1D9 SINE Alu -18 102 11 1 1661 232 322 122 0 chr4 141059855 141059945 -14570175 - PB1D7 SINE Alu -18 102 2 1 1661 369 242 79 73 chr4 141060556 141060734 -14569386 + B3A SINE B2 5 183 -15 1 1661 192 40 0 0 chr4 141060852 141060877 -14569243 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1661 1459 54 38 0 chr4 141060880 141061066 -14569054 + B2_Mm1a SINE B2 1 193 0 1 1661 1500 63 21 0 chr4 141061089 141061280 -14568840 + B2_Mm2 SINE B2 1 195 0 1 1661 1154 117 77 6 chr4 141061290 141061471 -14568649 + B2_Mm2 SINE B2 2 195 0 1 1661 540 174 321 6 chr4 141061480 141061642 -14568478 + B3 SINE B2 4 216 0 1 1661 278 308 44 106 chr4 141061804 141061964 -14568156 + B4 SINE B4 70 219 -73 1 1661 713 167 8 23 chr4 141061843 141061972 -14568148 + B1_Mus1 SINE Alu 21 147 -1 1 1661 1253 41 0 0 chr4 141062003 141062150 -14567970 + B1_Mus2 SINE Alu 1 147 0 1 1661 354 23 0 0 chr4 141062734 141062777 -14567343 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1661 250 283 81 0 chr4 141063856 141063955 -14566165 - PB1D9 SINE Alu -12 108 2 1 1661 1187 55 0 20 chr4 141063970 141064119 -14566001 + B1_Mm SINE Alu 2 147 0 1 1661 229 76 60 15 chr4 141064119 141064186 -14565934 + (CAAA)n Simple_repeat Simple_repeat 4 73 0 1 1661 1135 62 0 20 chr4 141064210 141064358 -14565762 + B2_Mm2 SINE B2 1 145 -50 1 1661 290 26 26 0 chr4 141065133 141065172 -14564948 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1661 859 162 22 0 chr4 141065172 141065308 -14564812 - B1_Mur3 SINE Alu -10 139 1 1 1661 416 207 67 22 chr4 141065308 141065397 -14564723 - PB1D10 SINE Alu -1 116 24 1 1661 25 51 0 0 chr4 141065539 141065578 -14564542 + AT_rich Low_complexity Low_complexity 1 39 0 1 1661 342 272 78 31 chr4 141065661 141065790 -14564330 - ID_B1 SINE B4 -4 220 86 1 1661 26 30 0 0 chr4 141065824 141065857 -14564263 + AT_rich Low_complexity Low_complexity 1 33 0 1 1661 386 287 28 0 chr4 141066061 141066169 -14563951 + B3A SINE B2 87 197 -1 1 1661 509 221 43 26 chr4 141066190 141066306 -14563814 + PB1D9 SINE Alu 1 118 -2 1 1661 656 197 16 8 chr4 141066804 141066932 -14563188 + B1_Mus1 SINE Alu 3 131 -17 1 1661 387 127 0 0 chr4 141066939 141067002 -14563118 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 1 1661 588 238 20 13 chr4 141067029 141067178 -14562942 + RSINE1 SINE B4 15 164 -1 1 1661 698 194 15 8 chr4 141067669 141067799 -14562321 - B1_Mur1 SINE Alu -4 145 15 1 1661 463 282 21 56 chr4 141067674 141067839 -14562281 - ID_B1 SINE B4 -75 217 58 1 1661 377 270 33 11 chr4 141067807 141067897 -14562223 - ID_B1 SINE B4 -4 220 129 1 1661 1073 97 7 0 chr4 141068048 141068193 -14561927 + B1_Mus2 SINE Alu 2 147 0 1 1661 258 222 14 0 chr4 141068640 141068712 -14561408 + (TTG)n Simple_repeat Simple_repeat 3 75 0 1 1661 222 250 135 0 chr4 141068712 141068764 -14561356 - ID SINE ID -150 74 16 1 1661 281 136 0 0 chr4 141068864 141068908 -14561212 + B3A SINE B2 1 44 -154 1 1661 241 222 0 36 chr4 141068945 141069001 -14561119 - B2_Mm2 SINE B2 -95 100 47 1 1661 1289 108 11 0 chr4 141069015 141069191 -14560929 - B2_Mm1t SINE B2 -15 178 1 1 1661 566 259 171 0 chr4 141069191 141069313 -14560807 + B3 SINE B2 32 154 -62 1 1661 578 82 12 0 chr4 141069313 141069398 -14560722 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 1 1661 566 259 171 0 chr4 141069398 141069433 -14560687 + B3 SINE B2 155 214 -2 1 1661 22 35 0 0 chr4 141069435 141069464 -14560656 + AT_rich Low_complexity Low_complexity 1 29 0 1 1661 688 197 31 8 chr4 141069486 141069614 -14560506 + B1_Mus2 SINE Alu 3 133 -14 1 1661 304 365 17 0 chr4 141070144 141070259 -14559861 + ID_B1 SINE B4 4 120 -104 1 1661 1082 132 32 21 chr4 141071010 141071196 -14558924 + B2_Mm2 SINE B2 1 188 -7 1 1661 1120 75 7 7 chr4 141071204 141071351 -14558769 + B1_Mus1 SINE Alu 2 148 0 1 1661 1212 62 0 0 chr4 141071722 141071868 -14558252 + B1_Mus2 SINE Alu 2 147 0 1 1661 240 35 0 0 chr4 141072757 141072786 -14557334 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1 1661 284 83 21 0 chr4 141073492 141073540 -14556580 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1661 730 146 69 8 chr4 141073756 141073887 -14556233 - B1_Mur1 SINE Alu -1 148 10 1 1661 385 239 11 21 chr4 141074104 141074198 -14555922 - PB1D10 SINE Alu -13 104 12 1 1661 288 280 12 47 chr4 141074601 141074687 -14555433 - ID4 SINE ID 0 83 1 1 1661 234 174 0 0 chr4 141074730 141074776 -14555344 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1661 1185 55 0 20 chr4 141075053 141075200 -14554920 + B1_Mus1 SINE Alu 2 145 -3 1 1661 960 95 0 0 chr4 141075201 141075338 -14554782 + (GAAA)n Simple_repeat Simple_repeat 3 139 0 1 1661 1550 56 0 39 chr4 141075340 141075543 -14554577 + B2_Mm2 SINE B2 1 195 0 1 1661 451 310 60 65 chr4 141075760 141075825 -14554295 - B4 SINE B4 -27 265 163 1 1661 508 181 24 0 chr4 141075825 141075908 -14554212 - B1_Mur1 SINE Alu -42 107 23 1 1661 663 71 0 0 chr4 141075905 141075990 -14554130 - B2_Mm2 SINE B2 -74 121 37 2 1661 451 310 60 65 chr4 141075908 141075977 -14554143 - B4 SINE B4 -27 162 50 1 1661 521 318 69 0 chr4 141076013 141076202 -14553918 - B4A SINE B4 -65 227 26 2 1661 420 37 0 0 chr4 141076306 141076360 -14553760 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1661 24 77 0 0 chr4 141078356 141078408 -14551712 + AT_rich Low_complexity Low_complexity 1 52 0 2 1661 278 247 12 110 chr4 141078574 141078656 -14551464 - B4A SINE B4 -218 74 1 1 1661 269 294 174 56 chr4 141079052 141079196 -14550924 - RSINE1 SINE B4 0 165 5 2 1661 357 24 0 0 chr4 141079713 141079755 -14550365 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1661 23 0 0 0 chr4 141079944 141079967 -14550153 + AT_rich Low_complexity Low_complexity 1 23 0 2 1661 545 186 151 8 chr4 141079967 141080086 -14550034 - B1_Mur1 SINE Alu -13 136 1 2 1661 263 369 9 19 chr4 141080156 141080261 -14549859 - YREP_Mm Unknown Unknown -1504 308 205 2 1661 532 284 0 8 chr4 141080168 141080285 -14549835 + ID_B1 SINE B4 103 218 -6 2 1661 240 59 0 0 chr4 141080356 141080390 -14549730 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1661 899 124 0 42 chr4 141080390 141080533 -14549587 - B1_Mus2 SINE Alu 0 147 11 2 1661 553 241 127 11 chr4 141080552 141080741 -14549379 - B3 SINE B2 -4 212 2 2 1661 716 275 0 68 chr4 141081078 141081285 -14548835 + B3A SINE B2 3 195 -3 2 1661 705 232 96 35 chr4 141081295 141081492 -14548628 + B3 SINE B2 1 209 -7 2 1661 450 0 0 0 chr4 141081545 141081595 -14548525 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1661 277 302 46 11 chr4 141081595 141081682 -14548438 + B3A SINE B2 39 128 -70 2 1661 266 254 0 27 chr4 141082214 141082287 -14547833 + ID4_ SINE ID 2 72 -11 2 1661 201 39 0 0 chr4 141082290 141082316 -14547804 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1661 1953 134 282 7 chr4 141082475 141082696 -14547424 + RMER4B LTR ERVK 18 247 -338 2 1661 225 0 0 0 chr4 141082696 141082721 -14547399 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 2 1661 1953 134 282 7 chr4 141082721 141082927 -14547193 + RMER4B LTR ERVK 248 562 -23 2 1661 547 59 0 0 chr4 141082927 141082995 -14547125 + B1_Mus1 SINE Alu 1 68 -80 2 1661 359 208 71 54 chr4 141083210 141083322 -14546798 - PB1D7 SINE Alu -5 115 2 2 1661 1183 195 0 27 chr4 141083349 141083570 -14546550 + B3 SINE B2 1 215 -1 2 1661 240 35 0 0 chr4 141083590 141083619 -14546501 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 2 1661 1175 109 17 22 chr4 141083855 141084033 -14546087 + B2_Mm2 SINE B2 3 179 -16 2 1661 1011 55 0 23 chr4 141084043 141084174 -14545946 + B1_Mus1 SINE Alu 21 148 0 2 1661 642 174 56 35 chr4 141084231 141084374 -14545746 + B1_Mus1 SINE Alu 1 146 -2 2 1661 460 276 36 22 chr4 141084427 141084564 -14545556 - B1F2 SINE Alu -1 148 10 2 1661 228 273 55 0 chr4 141084876 141084931 -14545189 + tRNA-Ala-GCY_ tRNA tRNA 9 66 -9 2 1661 372 158 204 82 chr4 141084952 141085090 -14545030 + B3A SINE B2 1 157 -41 2 1661 328 296 72 52 chr4 141085128 141085281 -14544839 + L1MC5 LINE L1 7623 7778 -183 2 1661 351 248 121 79 chr4 141085331 141085471 -14544649 + B1_Mus2 SINE Alu 2 147 0 2 1661 1154 75 0 20 chr4 141085750 141085899 -14544221 + B1_Mus2 SINE Alu 1 146 -1 2 1661 384 123 0 47 chr4 141085904 141085989 -14544131 + A-rich Low_complexity Low_complexity 5 85 0 2 1661 1343 77 49 5 chr4 141086015 141086199 -14543921 + B2_Mm2 SINE B2 2 193 -2 2 1661 219 139 0 0 chr4 141086213 141086249 -14543871 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1661 743 169 157 0 chr4 141086264 141086430 -14543690 + B3 SINE B2 19 210 -6 2 1661 482 180 24 7 chr4 141086459 141086556 -14543564 + B1_Mur2 SINE Alu 14 108 -12 2 1661 306 0 0 0 chr4 141087369 141087403 -14542717 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1661 1293 40 0 0 chr4 141087482 141087630 -14542490 - B1_Mus1 SINE Alu 0 148 1 2 1661 233 229 167 0 chr4 141087716 141087764 -14542356 + RSINE1 SINE B4 15 70 -95 2 1661 430 238 130 30 chr4 141087961 141088130 -14541990 + B3A SINE B2 1 186 -12 2 1661 278 218 50 121 chr4 141088510 141088609 -14541511 - B1_Mus2 SINE Alu -1 146 55 2 1661 518 295 128 31 chr4 141088769 141088965 -14541155 + ID_B1 SINE B4 8 222 -2 2 1661 481 221 58 73 chr4 141088977 141089114 -14541006 + B1_Mur2 SINE Alu 10 144 -5 2 1661 404 223 93 37 chr4 141089190 141089297 -14540823 - PB1D9 SINE Alu -6 114 2 2 1661 681 192 71 62 chr4 141089428 141089639 -14540481 + B3 SINE B2 1 213 -3 2 1661 405 240 52 105 chr4 141090067 141090088 -14540032 - ID_B1 SINE B4 -43 249 172 2 1661 655 152 16 33 chr4 141090088 141090210 -14539910 - B1_Mur2 SINE Alu 0 149 30 2 1661 405 240 52 105 chr4 141090210 141090230 -14539890 - ID_B1 SINE B4 -43 171 87 2 1661 417 20 0 0 chr4 141091408 141091458 -14538662 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 2 1661 231 114 0 0 chr4 141093550 141093594 -14536526 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1661 324 83 0 0 chr4 141094247 141094295 -14535825 + (CGG)n Simple_repeat Simple_repeat 2 49 0 2 1661 221 172 0 86 chr4 141094407 141094477 -14535643 + (CGGG)n Simple_repeat Simple_repeat 3 66 0 2 1661 36 97 0 0 chr4 141094520 141094633 -14535487 + GC_rich Low_complexity Low_complexity 1 113 0 2 1661 306 290 70 0 chr4 141095544 141095644 -14534476 - PB1D10 SINE Alu -1 116 10 2 1661 345 244 50 71 chr4 141095758 141095899 -14534221 + L1MCa LINE L1 1826 1963 -4545 2 1661 237 65 0 0 chr4 141095911 141095942 -14534178 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1661 416 250 262 7 chr4 141095951 141096096 -14534024 - B3A SINE B2 -16 182 1 2 1661 269 51 0 0 chr4 141096099 141096143 -14533977 - B1F SINE Alu -8 141 81 2 1661 735 180 208 34 chr4 141096181 141096359 -14533761 - B3 SINE B2 -6 210 2 2 1661 36 23 0 0 chr4 141096365 141096408 -14533712 + AT_rich Low_complexity Low_complexity 1 43 0 2 1661 500 246 8 8 chr4 141096450 141096569 -14533551 + PB1D9 SINE Alu 2 120 0 2 1661 444 290 72 57 chr4 141097054 141097235 -14532885 + B3A SINE B2 2 188 -10 2 1661 432 0 0 0 chr4 141097235 141097283 -14532837 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1661 444 290 72 57 chr4 141097283 141097295 -14532825 + B3A SINE B2 189 198 0 2 1661 585 168 167 9 chr4 141097304 141097418 -14532702 + B1_Mur2 SINE Alu 5 136 -13 2 1661 270 0 0 0 chr4 141097418 141097448 -14532672 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1661 22 70 0 0 chr4 141097448 141097491 -14532629 + AT_rich Low_complexity Low_complexity 1 43 0 2 1661 715 221 36 0 chr4 141097502 141097642 -14532478 + B1_Mur2 SINE Alu 2 146 -3 2 1661 234 0 0 0 chr4 141098366 141098392 -14531728 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1661 210 244 0 0 chr4 141098860 141098901 -14531219 - B1F SINE Alu -97 52 12 2 1661 440 226 167 0 chr4 141098942 141099044 -14531076 + PB1D9 SINE Alu 2 120 0 2 1661 342 0 0 0 chr4 141099050 141099088 -14531032 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 2 1661 186 43 0 0 chr4 141099386 141099409 -14530711 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2 1661 180 0 0 0 chr4 141099519 141099539 -14530581 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1661 558 165 13 28 chr4 141099555 141099677 -14530443 + B1_Mm SINE Alu 1 132 -16 2 1661 225 0 0 0 chr4 141099982 141100007 -14530113 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1661 1133 37 22 0 chr4 141100019 141100154 -14529966 + B1_Mus2 SINE Alu 1 138 -9 2 1661 515 205 256 28 chr4 141100330 141100506 -14529614 + B3 SINE B2 1 216 0 2 1661 24 32 0 0 chr4 141101976 141102007 -14528113 + GC_rich Low_complexity Low_complexity 1 31 0 2 1661 29 28 0 0 chr4 141102020 141102056 -14528064 + GC_rich Low_complexity Low_complexity 1 36 0 2 1661 46 68 0 0 chr4 141102608 141102696 -14527424 + GC_rich Low_complexity Low_complexity 1 88 0 2 1661 25 0 0 0 chr4 141103181 141103206 -14526914 + AT_rich Low_complexity Low_complexity 1 25 0 2 1661 381 223 20 41 chr4 141104000 141104098 -14526022 - ID_B1 SINE B4 0 224 129 2 1661 284 289 209 7 chr4 141104119 141104272 -14525848 - B3A SINE B2 -5 193 10 2 1661 758 211 11 49 chr4 141104829 141105013 -14525107 - B3 SINE B2 -31 185 9 2 1661 436 198 147 10 chr4 141105732 141105834 -14524286 - B1_Mur2 SINE Alu -7 142 27 2 1661 2183 220 49 68 chr4 141105890 141105943 -14524177 + RLTR18B LTR ERVK 7 59 -453 2 1661 225 0 0 0 chr4 141105943 141105968 -14524152 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1661 2183 220 49 68 chr4 141105968 141106427 -14523693 + RLTR18B LTR ERVK 60 508 -4 2 1661 203 304 88 12 chr4 141106503 141106583 -14523537 - L2 LINE L2 -1094 2325 2240 2 1661 1214 75 0 0 chr4 141106612 141106758 -14523362 + B1_Mus2 SINE Alu 1 146 -1 2 1661 184 30 29 29 chr4 141106758 141106792 -14523328 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 2 1661 397 267 35 90 chr4 141107096 141107240 -14522880 + B3 SINE B2 67 202 -14 2 1661 512 177 237 9 chr4 141107248 141107362 -14522758 - B1F2 SINE Alu -4 145 6 2 1661 282 248 89 74 chr4 141107596 141107703 -14522417 - ID_B1 SINE B4 -8 216 107 2 1661 441 0 0 0 chr4 141107703 141107752 -14522368 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1661 282 248 89 74 chr4 141107762 141107779 -14522341 - ID_B1 SINE B4 -118 106 80 2 1661 423 325 53 15 chr4 141107811 141108017 -14522103 + B4A SINE B4 8 221 -71 2 1661 471 231 57 43 chr4 141108033 141108173 -14521947 + PB1D9 SINE Alu 9 150 0 2 1661 487 254 21 71 chr4 141108333 141108473 -14521647 + ID_B1 SINE B4 84 216 -8 2 1661 1592 152 137 21 chr4 141108511 141108815 -14521305 + ORR1B2 LTR MaLR 1 342 -25 2 1661 1308 107 43 0 chr4 141108815 141109002 -14521118 + B2_Mm2 SINE B2 1 195 0 3 1661 1592 152 137 21 chr4 141109002 141109026 -14521094 + ORR1B2 LTR MaLR 343 366 -1 2 1661 1867 150 32 108 chr4 141109026 141109171 -14520949 + ORR1B2 LTR MaLR 23 139 -228 3 1661 1237 41 0 7 chr4 141109171 141109317 -14520803 + B1_Mus2 SINE Alu 2 146 -1 3 1661 198 0 0 0 chr4 141109322 141109344 -14520776 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1661 1867 150 32 108 chr4 141109344 141109566 -14520554 + ORR1B2 LTR MaLR 140 367 0 3 1661 212 301 68 14 chr4 141109612 141109686 -14520434 + PB1D10 SINE Alu 1 78 -39 3 1661 1278 21 0 0 chr4 141109723 141109864 -14520256 + B1_Mus1 SINE Alu 2 142 -6 3 1661 410 53 0 17 chr4 141109869 141109927 -14520193 + (GAAAA)n Simple_repeat Simple_repeat 3 59 0 3 1661 262 190 81 65 chr4 141109948 141110010 -14520110 + RSINE1 SINE B4 83 145 -20 3 1661 369 0 0 0 chr4 141110046 141110087 -14520033 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1661 308 282 52 52 chr4 141110241 141110357 -14519763 + L1MDa LINE L1 2394 2509 -4124 3 1661 264 59 0 0 chr4 141110418 141110452 -14519668 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1661 1277 14 0 7 chr4 141110452 141110599 -14519521 - B1_Mus2 SINE Alu 0 147 2 3 1661 2844 139 50 37 chr4 141110820 141111337 -14518783 + RLTR11A2 LTR ERVK 4 527 0 3 1661 218 277 21 0 chr4 141111350 141111397 -14518723 + B1F1 SINE Alu 19 66 -83 3 1661 387 0 0 0 chr4 141111434 141111477 -14518643 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1661 303 244 65 0 chr4 141111545 141111625 -14518495 - PB1D10 SINE Alu -55 94 10 3 1661 339 327 9 28 chr4 141111650 141111757 -14518363 - PB1 SINE Alu -4 123 19 3 1661 242 357 98 0 chr4 141111868 141111980 -14518140 - L2 LINE L2 -1739 1680 1558 3 1661 200 259 0 79 chr4 141112165 141112228 -14517892 + L2a LINE L2 3369 3426 0 3 1661 1645 42 0 0 chr4 141112303 141112495 -14517625 + B2_Mm1a SINE B2 2 193 0 3 1661 238 250 45 45 chr4 141112510 141112577 -14517543 + B1F SINE Alu 76 142 -7 3 1661 22 56 0 0 chr4 141112582 141112618 -14517502 + AT_rich Low_complexity Low_complexity 1 36 0 3 1661 386 207 29 107 chr4 141112644 141112710 -14517410 + B1F SINE Alu 54 119 -30 3 1661 1019 241 0 28 chr4 141112710 141112923 -14517197 + B3 SINE B2 3 209 -7 3 1661 386 207 29 107 chr4 141112923 141112959 -14517161 + B1F SINE Alu 120 148 -1 3 1661 448 289 6 102 chr4 141112991 141113049 -14517071 + ID_B1 SINE B4 70 127 -97 3 1661 2538 179 2 30 chr4 141113049 141113131 -14516989 + MTC LTR MaLR 1 82 -339 3 1661 1588 37 0 26 chr4 141113131 141113325 -14516795 + B2_Mm1a SINE B2 2 190 -3 3 1661 2538 179 2 30 chr4 141113325 141113675 -14516445 + MTC LTR MaLR 83 421 0 3 1661 448 289 6 102 chr4 141113675 141113708 -14516412 + ID_B1 SINE B4 128 156 -68 3 1661 862 81 295 0 chr4 141113708 141113857 -14516263 + B2_Mm2 SINE B2 2 194 -1 3 1661 448 289 6 102 chr4 141113857 141113930 -14516190 + ID_B1 SINE B4 157 218 -6 3 1661 247 212 135 45 chr4 141114049 141114138 -14515982 + RSINE1 SINE B4 56 152 -13 3 1661 548 193 3 42 chr4 141114435 141114581 -14515539 - PB1D9 SINE Alu -1 148 2 3 1661 352 23 0 0 chr4 141114716 141114760 -14515360 + HAL1-3A_ME LINE L1 1976 2019 -839 3 1661 362 284 94 80 chr4 141116145 141116283 -14513837 - B1F SINE Alu 0 149 10 3 1661 941 185 85 20 chr4 141116321 141116520 -14513600 - B3 SINE B2 -3 213 2 3 1661 769 189 0 27 chr4 141116572 141116719 -14513401 - B1_Mus1 SINE Alu -5 143 1 3 1661 668 207 14 22 chr4 141116922 141117060 -14513060 - B1_Mm SINE Alu 0 147 11 3 1661 397 192 10 0 chr4 141117085 141117180 -14512940 - PB1D9 SINE Alu -9 141 43 3 1661 1338 149 16 97 chr4 141117186 141117497 -14512623 - RMER10B LTR ERVL -109 289 4 3 1661 1456 43 35 65 chr4 141117518 141117719 -14512401 + B2_Mm2 SINE B2 1 195 0 3 1661 513 126 263 0 chr4 141117796 141117891 -14512229 + PB1D9 SINE Alu 1 120 0 3 1661 202 206 0 0 chr4 141118305 141118339 -14511781 + (CACG)n Simple_repeat Simple_repeat 1 34 0 3 1661 294 269 100 42 chr4 141118648 141118768 -14511352 + RSINE1 SINE B4 3 129 -36 3 1661 369 0 0 0 chr4 141118792 141118833 -14511287 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1661 1492 73 16 0 chr4 141118846 141119038 -14511082 - B2_Mm2 SINE B2 0 195 1 3 1661 414 0 0 0 chr4 141119095 141119141 -14510979 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1661 311 193 0 0 chr4 141119143 141119200 -14510920 + PB1D10 SINE Alu 23 79 -38 3 1661 250 295 105 0 chr4 141119260 141119355 -14510765 + PB1D7 SINE Alu 9 113 -7 3 1661 262 252 98 32 chr4 141119314 141119361 -14510759 + ID SINE ID 23 77 -147 3 1661 395 156 13 25 chr4 141119361 141119440 -14510680 + PB1D9 SINE Alu 1 78 -42 3 1661 243 217 43 117 chr4 141119363 141119457 -14510663 + MT2B LTR ERVL 167 253 -348 3 1661 757 234 66 52 chr4 141119878 141120073 -14510047 + B3 SINE B2 2 200 -16 3 1661 1243 27 0 26 chr4 141120073 141120224 -14509896 + B1_Mm SINE Alu 1 147 0 3 1661 757 234 66 52 chr4 141120224 141120240 -14509880 + B3 SINE B2 201 216 0 3 1661 818 166 7 33 chr4 141120366 141120516 -14509604 - B1_Mus2 SINE Alu 0 147 2 3 1661 246 190 71 100 chr4 141120785 141120855 -14509265 - B1_Mur1 SINE Alu -26 123 56 3 1661 1632 37 16 0 chr4 141120863 141121052 -14509068 + B2_Mm1t SINE B2 1 192 -1 3 1661 210 213 43 0 chr4 141121057 141121104 -14509016 + B3A SINE B2 36 84 -114 3 1661 353 209 0 113 chr4 141121591 141121688 -14508432 + ID_B1 SINE B4 139 224 0 3 1661 1105 83 14 14 chr4 141121738 141121885 -14508235 + B1_Mus1 SINE Alu 1 147 -1 3 1661 971 171 60 91 chr4 141121924 141122156 -14507964 + URR1B DNA MER1_type 1 225 0 3 1661 491 136 22 47 chr4 141122517 141122619 -14507501 - PB1D9 SINE Alu -1 119 20 3 1661 528 229 109 29 chr4 141122630 141122805 -14507315 - B2_Mm2 SINE B2 -5 190 2 3 1661 279 0 0 0 chr4 141122815 141122846 -14507274 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1661 1189 82 0 0 chr4 141123089 141123236 -14506884 + B1_Mus1 SINE Alu 1 147 -1 3 1661 2612 149 132 10 chr4 141123390 141123812 -14506308 + RLTR20A2 LTR ERVK 1 488 -90 3 1661 305 24 0 23 chr4 141123812 141123855 -14506265 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1661 2612 149 132 10 chr4 141123855 141123947 -14506173 + RLTR20A2 LTR ERVK 489 577 -1 3 1661 341 137 206 0 chr4 141124003 141124076 -14506044 + B1_Mus1 SINE Alu 11 98 -50 3 1661 945 200 74 15 chr4 141124089 141124292 -14505828 - B3 SINE B2 0 216 2 3 1661 1043 122 0 0 chr4 141124323 141124462 -14505658 + B1_Mur4 SINE Alu 5 143 -7 3 1661 1358 104 0 27 chr4 141124472 141124659 -14505461 + B2_Mm2 SINE B2 2 183 -12 3 1661 909 42 0 0 chr4 141124659 141124778 -14505342 + B1_Mm SINE Alu 29 147 0 3 1661 239 240 78 26 chr4 141124971 141125048 -14505072 + B1F2 SINE Alu 40 120 -29 3 1661 583 274 6 32 chr4 141125110 141125268 -14504852 + RSINE1 SINE B4 12 165 0 3 1661 202 265 0 20 chr4 141125277 141125327 -14504793 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 3 1661 995 76 0 0 chr4 141125413 141125544 -14504576 + B2_Mm2 SINE B2 1 131 -64 3 1661 386 255 0 105 chr4 141125613 141125727 -14504393 - PB1D9 SINE Alu -6 114 13 3 1661 699 208 8 0 chr4 141125732 141125862 -14504258 - B3 SINE B2 -84 132 2 3 1661 189 277 108 0 chr4 141126012 141126095 -14504025 - L2a LINE L2 0 3426 3335 3 1661 936 70 141 0 chr4 141126325 141126453 -14503667 + B1_Mus2 SINE Alu 1 146 -1 3 1661 1381 150 20 137 chr4 141126466 141126913 -14503207 - RMER17C LTR ERVK -15 395 1 3 1661 864 60 0 0 chr4 141127649 141127766 -14502354 - B1_Mm SINE Alu 0 147 31 3 1661 510 180 0 0 chr4 141127792 141127881 -14502239 - RLTR1B LTR ERV1 -76 436 348 3 1661 428 110 3 3 chr4 141127869 141127945 -14502175 - RLTR1B LTR ERV1 -102 410 355 3 1661 551 257 34 14 chr4 141128188 141128334 -14501786 - B1F2 SINE Alu 0 149 1 3 1661 541 197 101 16 chr4 141128626 141128755 -14501365 + ID_B1 SINE B4 80 219 -5 3 1661 277 336 0 62 chr4 141129533 141129663 -14500457 - LTR37A LTR ERV1 -304 122 1 3 1661 249 197 0 0 chr4 141129904 141129965 -14500155 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1661 243 253 157 0 chr4 141129965 141130048 -14500072 + RSINE1 SINE B4 4 99 -66 3 1661 243 0 0 0 chr4 141130056 141130083 -14500037 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1661 1049 184 102 0 chr4 141130157 141130353 -14499767 + B3 SINE B2 1 216 0 3 1661 498 242 75 50 chr4 141130429 141130629 -14499491 - ID_B1 SINE B4 -19 205 1 3 1661 854 158 43 0 chr4 141130635 141130774 -14499346 - B1_Mur4 SINE Alu -1 149 5 3 1661 369 231 9 69 chr4 141130785 141130901 -14499219 - PB1D7 SINE Alu -7 113 5 3 1661 414 263 0 57 chr4 141130919 141131060 -14499060 - ID_B1 SINE B4 -9 215 83 3 1661 23 54 0 0 chr4 141131642 141131679 -14498441 + AT_rich Low_complexity Low_complexity 1 37 0 3 1661 382 292 17 0 chr4 141131802 141131922 -14498198 + ID_B1 SINE B4 103 224 0 3 1661 585 305 26 0 chr4 141132071 141132225 -14497895 - RSINE1 SINE B4 -4 161 4 3 1661 234 91 0 0 chr4 141132375 141132408 -14497712 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1661 297 317 130 0 chr4 141132661 141132784 -14497336 - B1F SINE Alu -6 143 5 3 1661 397 270 22 0 chr4 141132807 141132896 -14497224 - PB1D9 SINE Alu -29 91 1 3 1661 848 228 23 45 chr4 141132902 141133123 -14496997 - B3 SINE B2 0 216 1 3 1661 495 214 31 0 chr4 141133216 141133314 -14496806 - B1_Mm SINE Alu -41 106 6 3 1661 265 256 64 43 chr4 141133945 141133968 -14496152 - ID_B1 SINE B4 -1 223 201 3 1661 216 0 0 0 chr4 141133968 141133992 -14496128 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1661 1189 36 0 0 chr4 141133992 141134129 -14495991 - B1_Mus1 SINE Alu -10 138 2 4 1661 265 256 64 43 chr4 141134129 141134198 -14495922 - ID_B1 SINE B4 -24 200 129 3 1661 423 258 52 15 chr4 141134204 141134338 -14495782 - B1F SINE Alu -5 144 6 4 1661 1144 77 0 0 chr4 141135165 141135308 -14494812 + B1_Mus1 SINE Alu 2 144 -4 4 1661 335 91 0 35 chr4 141135418 141135475 -14494645 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 4 1661 1220 117 21 11 chr4 141135475 141135665 -14494455 - B2_Mm2 SINE B2 0 195 4 4 1661 798 281 185 46 chr4 141135824 141136175 -14493945 + MTD LTR MaLR 20 419 0 4 1661 511 188 150 38 chr4 141136456 141136589 -14493531 - B1_Mus1 SINE Alu 0 148 1 4 1661 191 61 30 0 chr4 141136603 141136636 -14493484 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 1661 1283 34 0 0 chr4 141136636 141136783 -14493337 - B1_Mus2 SINE Alu 0 147 1 4 1661 23 0 0 0 chr4 141137303 141137326 -14492794 + AT_rich Low_complexity Low_complexity 1 23 0 4 1661 795 182 0 0 chr4 141137348 141137480 -14492640 - RSINE1 SINE B4 -33 132 1 4 1661 410 153 11 76 chr4 141137491 141137583 -14492537 - PB1D9 SINE Alu -1 119 34 4 1661 506 155 0 10 chr4 141137697 141137795 -14492325 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1661 1156 75 0 0 chr4 141137947 141138093 -14492027 + B1_Mus1 SINE Alu 1 146 -2 4 1661 207 0 0 0 chr4 141138093 141138116 -14492004 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1661 967 169 198 0 chr4 141138126 141138303 -14491817 - B3 SINE B2 -4 212 1 4 1661 951 133 124 30 chr4 141138308 141138509 -14491611 - ID_B1 SINE B4 -4 220 1 4 1661 573 113 0 67 chr4 141138642 141138746 -14491374 + B1_Mur4 SINE Alu 33 129 -21 4 1661 286 354 0 0 chr4 141139258 141139340 -14490780 - ID4_ SINE ID 0 83 2 4 1661 354 271 77 98 chr4 141139386 141139529 -14490591 - ID_B1 SINE B4 -1 223 84 4 1661 256 306 53 26 chr4 141139596 141139710 -14490410 - PB1D10 SINE Alu 0 117 1 4 1661 780 124 76 49 chr4 141139787 141139931 -14490189 + B1_Mur3 SINE Alu 2 149 0 4 1661 180 143 0 0 chr4 141139937 141139979 -14490141 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1661 365 293 85 20 chr4 141140027 141140180 -14489940 + MLT1D LTR MaLR 310 472 -33 4 1661 212 292 51 20 chr4 141140464 141140562 -14489558 + MIR SINE MIR 90 190 -72 4 1661 230 291 51 62 chr4 141140814 141140990 -14489130 - RMER17A LTR ERVK -241 510 337 4 1661 488 234 121 79 chr4 141141067 141141257 -14488863 + B3A SINE B2 1 198 0 4 1661 859 113 113 0 chr4 141141268 141141401 -14488719 + B1_Mus1 SINE Alu 1 148 0 4 1661 329 295 53 0 chr4 141141415 141141510 -14488610 - B1_Mur3 SINE Alu -49 100 1 4 1661 515 246 18 0 chr4 141141558 141141672 -14488448 + PB1D10 SINE Alu 2 117 0 4 1661 245 128 0 0 chr4 141141676 141141715 -14488405 + B2_Mm2 SINE B2 3 41 -154 4 1661 1185 81 98 0 chr4 141141726 141141900 -14488220 + B2_Mm2 SINE B2 2 192 -3 4 1661 1318 14 0 0 chr4 141141904 141142050 -14488070 + B1_Mm SINE Alu 2 147 0 4 1661 21 0 0 0 chr4 141142050 141142071 -14488049 + AT_rich Low_complexity Low_complexity 1 21 0 4 1661 358 86 35 0 chr4 141142073 141142131 -14487989 + B1_Mus1 SINE Alu 1 60 -88 4 1661 2083 170 186 67 chr4 141142197 141142242 -14487878 + RMER4B LTR ERVK 1 45 -540 4 1661 1113 76 14 7 chr4 141142242 141142387 -14487733 + B1_Mus2 SINE Alu 1 146 -1 4 1661 2083 170 186 67 chr4 141142387 141142401 -14487719 + RMER4B LTR ERVK 46 46 -539 4 1661 977 90 14 0 chr4 141142401 141142546 -14487574 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 4 1661 2083 170 186 67 chr4 141142546 141143008 -14487112 + RMER4B LTR ERVK 46 585 0 4 1661 193 159 133 22 chr4 141143106 141143151 -14486969 + L2b LINE L2 3303 3352 -23 4 1661 329 23 23 0 chr4 141143601 141143644 -14486476 - HAL1-3A_ME LINE L1 -839 2019 1976 4 1661 243 0 0 0 chr4 141143670 141143697 -14486423 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1661 749 143 16 8 chr4 141143756 141143883 -14486237 - B1F2 SINE Alu -12 137 10 4 1661 298 303 145 0 chr4 141143791 141143936 -14486184 - B4A SINE B4 -100 192 27 4 1661 578 167 0 0 chr4 141143910 141144006 -14486114 - ID_B1 SINE B4 0 224 129 4 1661 426 236 55 0 chr4 141144006 141144020 -14486100 - B1F SINE Alu 0 149 34 4 1661 314 312 70 18 chr4 141144100 141144214 -14485906 - RSINE1 SINE B4 -37 128 9 4 1661 22 70 0 0 chr4 141144237 141144280 -14485840 + AT_rich Low_complexity Low_complexity 1 43 0 4 1661 539 232 70 28 chr4 141144282 141144424 -14485696 + B1F1 SINE Alu 1 148 -1 4 1661 715 110 11 219 chr4 141144442 141144629 -14485491 - B1_Mur3 SINE Alu 0 149 2 4 1661 363 244 33 170 chr4 141144652 141144805 -14485315 + B1F1 SINE Alu 18 149 0 4 1661 1061 58 0 0 chr4 141144806 141144944 -14485176 + B2_Mm2 SINE B2 7 144 -51 4 1661 475 319 27 93 chr4 141144944 141145031 -14485089 + ID_B1 SINE B4 7 216 -8 4 1661 287 294 93 66 chr4 141145386 141145568 -14484552 - MIRc SINE MIR -64 204 18 4 1661 186 133 0 0 chr4 141145862 141145892 -14484228 + (CGGGGG)n Simple_repeat Simple_repeat 5 34 0 4 1661 317 264 6 219 chr4 141146412 141146468 -14483652 - B1_Mm SINE Alu -21 126 80 4 1661 1233 41 0 7 chr4 141146468 141146616 -14483504 + B1_Mus2 SINE Alu 1 147 0 4 1661 317 264 6 219 chr4 141146616 141146719 -14483401 - B1_Mm SINE Alu -68 79 1 4 1661 314 250 36 0 chr4 141146726 141146810 -14483310 + L1M1 LINE L1 5520 5606 -697 4 1661 760 222 140 21 chr4 141146811 141147004 -14483116 + B3 SINE B2 1 216 0 4 1661 542 213 11 0 chr4 141147026 141147127 -14482993 + B1_Mur3 SINE Alu 1 105 -15 4 1661 1174 61 0 7 chr4 141147127 141147275 -14482845 + B1_Mus1 SINE Alu 2 148 0 4 1661 467 259 35 0 chr4 141147275 141147289 -14482831 + PB1D9 SINE Alu 106 119 -1 4 1661 257 368 79 29 chr4 141147289 141147310 -14482810 + B4 SINE B4 191 229 -63 4 1661 388 214 146 0 chr4 141147345 141147434 -14482686 + RSINE1 SINE B4 3 104 -61 4 1661 261 192 0 0 chr4 141147511 141147563 -14482557 + L1_Rod LINE L1 5540 5591 -256 4 1661 457 286 15 41 chr4 141147569 141147775 -14482345 + B3A SINE B2 28 216 0 4 1661 660 279 67 34 chr4 141147778 141147969 -14482151 + B3 SINE B2 1 200 -16 4 1661 575 216 111 74 chr4 141147969 141148159 -14481961 + B3A SINE B2 2 198 0 4 1661 660 279 67 34 chr4 141148159 141148175 -14481945 + B3 SINE B2 201 215 -1 4 1661 1280 101 17 11 chr4 141148340 141148521 -14481599 + B2_Mm2 SINE B2 1 182 -13 4 1661 347 275 58 90 chr4 141148548 141148573 -14481547 + B4A SINE B4 77 225 -65 4 1661 803 141 0 8 chr4 141148573 141148702 -14481418 + B1_Mus2 SINE Alu 18 145 -2 4 1661 30 0 0 0 chr4 141148704 141148734 -14481386 + AT_rich Low_complexity Low_complexity 1 30 0 4 1661 336 231 13 0 chr4 141149017 141149095 -14481025 + RSINE1 SINE B4 11 89 -76 4 1661 1668 137 79 10 chr4 141149143 141149446 -14480674 + ORR1B2 LTR MaLR 1 324 -43 4 1661 1337 96 11 0 chr4 141149446 141149623 -14480497 + B2_Mm1a SINE B2 1 179 -14 4 1661 282 95 0 56 chr4 141149637 141149738 -14480382 + B2_Mm2 SINE B2 47 193 -2 4 1661 1188 75 0 7 chr4 141149738 141149877 -14480243 + B1_Mus2 SINE Alu 1 139 -8 4 1661 304 40 20 20 chr4 141149877 141149928 -14480192 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1661 393 291 32 51 chr4 141149946 141150102 -14480018 + RSINE1 SINE B4 1 153 -12 4 1661 455 333 0 0 chr4 141150357 141150504 -14479616 + (TG)n Simple_repeat Simple_repeat 1 147 0 4 1661 328 304 0 0 chr4 141150520 141150688 -14479432 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1661 603 272 43 25 chr4 141150692 141150854 -14479266 - RSINE1 SINE B4 0 165 1 4 1661 405 301 23 62 chr4 141150854 141151031 -14479089 - MIR SINE MIR -64 198 29 4 1661 222 236 0 0 chr4 141151519 141151574 -14478546 + PB1D10 SINE Alu 41 95 -22 4 1661 306 0 0 0 chr4 141152059 141152093 -14478027 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1661 579 150 208 0 chr4 141152194 141152314 -14477806 + B1_Mur4 SINE Alu 3 147 -3 4 1661 297 75 0 0 chr4 141152318 141152358 -14477762 + (CACG)n Simple_repeat Simple_repeat 1 40 0 4 1661 1166 51 0 0 chr4 141152377 141152514 -14477606 + B1_Mus2 SINE Alu 1 137 -10 4 1661 740 199 13 27 chr4 141153353 141153503 -14476617 + B1_Mur3 SINE Alu 2 149 0 4 1661 1048 112 0 14 chr4 141153530 141153675 -14476445 + B1_Mur4 SINE Alu 3 145 -5 4 1661 243 0 0 0 chr4 141153698 141153725 -14476395 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1661 484 213 9 69 chr4 141153729 141153845 -14476275 + B1_Mur1 SINE Alu 3 111 -38 4 1661 183 42 0 0 chr4 141153845 141153869 -14476251 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1661 455 199 7 26 chr4 141153873 141153987 -14476133 + PB1D10 SINE Alu 1 107 -10 4 1661 189 154 0 0 chr4 141154294 141154333 -14475787 + C-rich Low_complexity Low_complexity 2 40 0 4 1661 229 298 58 0 chr4 141155040 141155135 -14474985 + MIRb SINE MIR 80 181 -87 4 1661 237 213 30 50 chr4 141155748 141155847 -14474273 + C-rich Low_complexity Low_complexity 3 99 0 4 1661 186 43 0 0 chr4 141157519 141157542 -14472578 + (CTG)n Simple_repeat Simple_repeat 2 24 0 4 1661 602 192 104 0 chr4 141158268 141158393 -14471727 - B1_Mur1 SINE Alu -5 144 7 4 1661 1002 138 101 0 chr4 141159162 141159351 -14470769 + MTC LTR MaLR 4 211 -210 4 1661 815 201 7 0 chr4 141159352 141159496 -14470624 + B1_Mus1 SINE Alu 1 145 -3 4 1661 287 290 47 121 chr4 141159363 141159512 -14470608 + B4A SINE B4 96 233 -59 5 1661 948 137 0 0 chr4 141159512 141159658 -14470462 + B2_Mm2 SINE B2 1 146 -49 5 1661 732 160 87 16 chr4 141159804 141159931 -14470189 + B1_Mur4 SINE Alu 2 137 -13 5 1661 689 311 41 15 chr4 141160449 141160720 -14469400 + Arthur1C DNA Tip100 5 282 -81 5 1661 353 247 0 49 chr4 141160762 141160843 -14469277 - B4 SINE B4 0 292 216 5 1661 812 74 0 0 chr4 141160912 141161020 -14469100 + B2_Mm2 SINE B2 2 109 -86 5 1661 395 238 161 67 chr4 141161086 141161266 -14468854 - B3A SINE B2 0 198 2 5 1661 396 329 115 41 chr4 141161898 141162142 -14467978 + MLT1F1 LTR MaLR 308 569 0 5 1661 693 188 14 7 chr4 141162404 141162549 -14467571 + B1_Mus1 SINE Alu 2 147 -1 5 1661 1094 103 76 0 chr4 141162593 141162778 -14467342 - MTC LTR MaLR 0 421 223 5 1661 1064 121 66 6 chr4 141162786 141162797 -14467323 - B2_Mm2 SINE B2 -19 176 166 5 1661 216 0 0 0 chr4 141162797 141162821 -14467299 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 5 1661 1064 121 66 6 chr4 141162821 141162975 -14467145 - B2_Mm2 SINE B2 -30 165 1 5 1661 855 156 11 11 chr4 141162987 141163102 -14467018 + polypyrimidine Low_complexity Low_complexity 61 177 0 5 1661 1473 39 0 0 chr4 141163102 141163282 -14466838 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1661 855 156 11 11 chr4 141163282 141163341 -14466779 + polypyrimidine Low_complexity Low_complexity 3 60 0 5 1661 1293 110 60 16 chr4 141163347 141163532 -14466588 - B2_Mm2 SINE B2 -1 194 2 5 1661 183 100 0 0 chr4 141163540 141163570 -14466550 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1661 1205 35 0 27 chr4 141163571 141163720 -14466400 - B1_Mus2 SINE Alu 0 147 3 5 1661 513 139 0 0 chr4 141163723 141163802 -14466318 - MTC LTR MaLR -342 79 1 5 1661 198 0 0 0 chr4 141163821 141163843 -14466277 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 5 1661 627 81 0 0 chr4 141163844 141163930 -14466190 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1661 1039 137 19 0 chr4 141164133 141164294 -14465826 - B2_Mm2 SINE B2 -31 164 1 5 1661 287 239 28 14 chr4 141164306 141164378 -14465742 + MTD LTR MaLR 6 78 -341 5 1662 389 270 59 10 chr4 141164605 141164706 -14465414 - RSINE1 SINE B4 -52 113 8 5 1662 843 10 0 0 chr4 141164732 141164828 -14465292 + (TTTCC)n Simple_repeat Simple_repeat 4 99 0 5 1662 306 106 0 0 chr4 141164828 141164875 -14465245 + (TCC)n Simple_repeat Simple_repeat 3 49 0 5 1662 1231 48 0 0 chr4 141164894 141165040 -14465080 + B1_Mus1 SINE Alu 3 148 0 5 1662 225 83 0 0 chr4 141165042 141165078 -14465042 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1662 822 260 14 47 chr4 141165081 141165295 -14464825 - ID_B1 SINE B4 -16 208 2 5 1662 790 263 46 37 chr4 141165863 141166080 -14464040 - ID_B1 SINE B4 0 224 6 5 1662 743 211 7 0 chr4 141166472 141166614 -14463506 + B3A SINE B2 2 144 -54 5 1662 282 87 0 0 chr4 141166641 141166687 -14463433 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1662 411 21 0 0 chr4 141166687 141166735 -14463385 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1662 348 252 219 44 chr4 141166743 141166770 -14463350 + ID_B1 SINE B4 57 217 -7 5 1662 438 238 18 45 chr4 141166770 141166880 -14463240 + PB1D7 SINE Alu 7 113 -7 5 1662 639 183 92 0 chr4 141166888 141167008 -14463112 + B1_Mur2 SINE Alu 1 131 -18 5 1662 679 193 81 7 chr4 141167141 141167277 -14462843 - B1_Mur2 SINE Alu -1 148 3 5 1662 696 125 41 8 chr4 141167311 141167432 -14462688 - B1_Mur3 SINE Alu -1 148 24 5 1662 2122 189 39 90 chr4 141167882 141168234 -14461886 + RLTR20A LTR ERVK 1 350 -191 5 1662 1361 82 16 0 chr4 141168234 141168418 -14461702 + B2_Mm1t SINE B2 1 187 -6 5 1662 2122 189 39 90 chr4 141168418 141168634 -14461486 + RLTR20A LTR ERVK 351 540 -1 5 1662 547 173 157 52 chr4 141168653 141168787 -14461333 - B1F2 SINE Alu -1 148 1 5 1662 189 0 0 0 chr4 141168869 141168890 -14461230 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 5 1662 876 119 82 7 chr4 141168890 141169016 -14461104 - B1_Mur4 SINE Alu -13 137 1 5 1662 1194 118 37 11 chr4 141169044 141169232 -14460888 - B2_Mm2 SINE B2 -1 194 2 5 1662 385 313 37 22 chr4 141169267 141169390 -14460730 - B3A SINE B2 0 198 74 5 1662 2567 161 59 14 chr4 141169390 141169882 -14460238 + RMER20A LTR ERVK 1 514 -2 5 1662 287 350 189 10 chr4 141171346 141171712 -14458408 + L2b LINE L2 2680 3105 -270 5 1662 718 206 197 21 chr4 141172808 141172996 -14457124 - ID_B1 SINE B4 -2 222 2 5 1662 441 0 0 0 chr4 141173024 141173073 -14457047 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1662 1285 34 0 0 chr4 141174393 141174540 -14455580 + B1_Mus2 SINE Alu 1 147 0 5 1662 195 42 0 0 chr4 141174686 141174710 -14455410 + (CGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1662 373 170 11 11 chr4 141175182 141175271 -14454849 + CT-rich Low_complexity Low_complexity 2 90 0 5 1662 786 250 62 5 chr4 141175274 141175467 -14454653 - ID_B1 SINE B4 -18 206 3 5 1662 226 299 47 79 chr4 141175651 141175778 -14454342 + MLT1B LTR MaLR 263 385 -5 5 1662 309 303 36 9 chr4 141175883 141175993 -14454127 + MIRb SINE MIR 27 139 -129 5 1662 903 115 0 0 chr4 141176760 141176899 -14453221 + (TCCC)n Simple_repeat Simple_repeat 2 140 0 5 1662 233 119 24 0 chr4 141176899 141176941 -14453179 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1662 1304 20 0 0 chr4 141176945 141177091 -14453029 - B1_Mus1 SINE Alu 0 148 3 5 1662 234 298 85 0 chr4 141177093 141177187 -14452933 + MIRb SINE MIR 64 165 -103 5 1662 382 265 49 0 chr4 141177739 141177841 -14452279 - PB1D10 SINE Alu -10 107 1 5 1662 238 208 39 0 chr4 141177854 141177931 -14452189 + CT-rich Low_complexity Low_complexity 3 82 0 5 1662 796 233 36 59 chr4 141178576 141178795 -14451325 - ID_B1 SINE B4 -9 215 2 5 1662 933 162 7 0 chr4 141180108 141180256 -14449864 - B1_Mur1 SINE Alu 0 149 1 5 1662 774 185 81 76 chr4 141180454 141180665 -14449455 - B3 SINE B2 -4 212 1 5 1662 764 144 37 15 chr4 141180670 141180804 -14449316 - B1_Mur4 SINE Alu 0 150 14 5 1662 434 277 223 13 chr4 141180926 141181164 -14448956 - Tigger7 DNA MER2_type -2160 331 44 5 1662 512 211 83 0 chr4 141182896 141183005 -14447115 + PB1D9 SINE Alu 3 120 0 5 1662 1449 49 60 5 chr4 141183009 141183194 -14446926 + B2_Mm2 SINE B2 1 195 0 5 1662 582 13 0 37 chr4 141183209 141183290 -14446830 + B1_Mm SINE Alu 70 147 0 5 1662 237 0 47 94 chr4 141183291 141183355 -14446765 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 5 1662 441 130 0 0 chr4 141184517 141184586 -14445534 - ID_B1 SINE B4 0 224 156 5 1662 189 171 0 0 chr4 141187884 141187919 -14442201 + CT-rich Low_complexity Low_complexity 5 39 0 5 1662 429 264 0 18 chr4 141188705 141188817 -14441303 + PB1D10 SINE Alu 1 110 -7 5 1662 510 228 163 16 chr4 141188841 141188970 -14441150 + B1F2 SINE Alu 1 148 -1 5 1662 597 14 0 0 chr4 141189281 141189351 -14440769 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1662 348 24 0 0 chr4 141189351 141189392 -14440728 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1662 400 308 34 58 chr4 141189571 141189778 -14440342 + RLTR12B LTR ERVK 299 500 -28 5 1662 270 0 0 0 chr4 141189812 141189842 -14440278 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1662 1150 49 21 0 chr4 141189902 141190046 -14440074 - B1_Mus2 SINE Alu 0 147 1 5 1662 225 0 0 0 chr4 141191484 141191509 -14438611 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1662 619 282 6 0 chr4 141192681 141192708 -14437412 - RSINE1 SINE B4 -6 159 133 5 1662 222 118 0 0 chr4 141192708 141192742 -14437378 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1662 619 282 6 0 chr4 141192742 141192870 -14437250 - RSINE1 SINE B4 -33 132 4 5 1662 541 250 17 0 chr4 141193846 141193962 -14436158 - ID_B1 SINE B4 -7 217 100 5 1662 252 59 0 0 chr4 141193976 141194010 -14436110 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1662 418 283 25 8 chr4 141194010 141194131 -14435989 - RSINE1 SINE B4 -41 124 2 5 1662 416 280 0 0 chr4 141194131 141194222 -14435898 - ID_B1 SINE B4 -133 91 1 5 1662 555 96 0 0 chr4 141194450 141194533 -14435587 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 5 1662 1234 41 0 7 chr4 141194533 141194681 -14435439 - B1_Mus1 SINE Alu 0 148 2 5 1662 360 364 0 0 chr4 141195134 141195461 -14434659 + (CAGTT)n Simple_repeat Simple_repeat 1 327 0 5 1662 555 165 22 9 chr4 141195961 141196197 -14433923 + (CA)n Simple_repeat Simple_repeat 1 239 0 5 1662 366 210 126 29 chr4 141196551 141196654 -14433466 + Tigger7 DNA MER2_type 5 117 -2374 5 1662 650 195 18 0 chr4 141196663 141196776 -14433344 + PB1D9 SINE Alu 1 115 -5 5 1662 409 336 0 26 chr4 141196838 141196991 -14433129 - RSINE1 SINE B4 -15 150 2 5 1662 369 0 0 0 chr4 141198921 141198962 -14431158 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1662 483 18 0 0 chr4 141198962 141199017 -14431103 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1662 24 53 0 0 chr4 141199062 141199100 -14431020 + AT_rich Low_complexity Low_complexity 1 38 0 5 1662 291 275 12 0 chr4 141199288 141199368 -14430752 + GA-rich Low_complexity Low_complexity 1 81 0 5 1662 570 240 45 23 chr4 141200103 141200235 -14429885 - RSINE1 SINE B4 -29 136 2 5 1662 481 96 121 0 chr4 141200329 141200412 -14429708 - B3 SINE B2 -123 93 1 5 1662 1537 49 27 0 chr4 141200680 141200865 -14429255 - B2_Mm1a SINE B2 -2 191 2 5 1662 198 0 0 0 chr4 141200883 141200905 -14429215 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1662 612 278 6 32 chr4 141200914 141201070 -14429050 + RSINE1 SINE B4 14 165 0 5 1662 210 278 97 11 chr4 141201101 141201228 -14428892 + MIR SINE MIR 15 149 -119 6 1662 832 127 89 7 chr4 141201239 141201374 -14428746 + B1_Mur4 SINE Alu 1 146 -4 6 1662 207 0 0 0 chr4 141201409 141201432 -14428688 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1662 446 299 103 56 chr4 141201493 141201549 -14428571 + ID SINE ID 2 57 -167 6 1662 351 0 0 0 chr4 141201549 141201588 -14428532 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1662 446 299 103 56 chr4 141201588 141201638 -14428482 + ID_B1 SINE B4 58 222 0 6 1662 695 58 87 0 chr4 141201638 141201742 -14428378 + B1_Mus1 SINE Alu 36 148 0 6 1662 1041 272 27 107 chr4 141202125 141202537 -14427583 - MTE2a LTR MaLR 0 379 1 6 1662 238 194 28 0 chr4 141202541 141202613 -14427507 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1662 446 250 52 26 chr4 141202726 141202742 -14427378 - B4A SINE B4 -46 246 230 6 1662 883 201 0 0 chr4 141202742 141202886 -14427234 - B1_Mur1 SINE Alu -5 144 1 6 1662 446 250 52 26 chr4 141202886 141202984 -14427136 - B4A SINE B4 -63 229 129 6 1662 807 196 7 13 chr4 141203063 141203213 -14426907 + B1_Mur2 SINE Alu 1 149 0 6 1662 437 217 163 0 chr4 141203425 141203517 -14426603 + PB1D10 SINE Alu 3 109 -8 6 1662 826 221 51 51 chr4 141203634 141203809 -14426311 + B3 SINE B2 2 186 -30 6 1662 411 21 0 0 chr4 141203809 141203857 -14426263 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1662 826 221 51 51 chr4 141203857 141203879 -14426241 + B3 SINE B2 187 202 -14 6 1662 1186 49 14 0 chr4 141203879 141204023 -14426097 + B1_Mus2 SINE Alu 2 147 0 6 1662 826 221 51 51 chr4 141204023 141204039 -14426081 + B3 SINE B2 203 216 0 6 1662 247 297 27 0 chr4 141204574 141204648 -14425472 - ID4 SINE ID -7 76 1 6 1662 391 375 142 19 chr4 141204868 141205331 -14424789 - L2 LINE L2 -366 3053 2534 6 1662 197 344 134 24 chr4 141205629 141205793 -14424327 - L2 LINE L2 -355 3064 2883 6 1662 1235 185 9 23 chr4 141205983 141206204 -14423916 - ID_B1 SINE B4 -5 219 2 6 1662 639 209 31 0 chr4 141206236 141206365 -14423755 - B1_Mur4 SINE Alu 0 150 18 6 1662 762 218 39 63 chr4 141206730 141206936 -14423184 + B3A SINE B2 16 216 0 6 1662 639 144 29 50 chr4 141206945 141207064 -14423056 + B1_Mur4 SINE Alu 15 137 -13 6 1662 270 0 0 0 chr4 141207064 141207094 -14423026 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 1662 639 144 29 50 chr4 141207094 141207113 -14423007 + B1_Mur4 SINE Alu 138 150 0 6 1662 198 206 197 45 chr4 141207208 141207274 -14422846 + MER5B DNA MER1_type 47 122 -56 6 1662 324 289 85 19 chr4 141208391 141208497 -14421623 - PB1D10 SINE Alu -3 114 2 6 1662 459 0 0 0 chr4 141208713 141208764 -14421356 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1662 1165 51 0 0 chr4 141208764 141208901 -14421219 - B1_Mus1 SINE Alu -10 138 2 6 1662 1351 199 113 55 chr4 141208945 141209307 -14420813 + ORR1C2 LTR MaLR 2 384 0 6 1662 320 299 0 0 chr4 141209311 141209398 -14420722 - PB1D10 SINE Alu -30 87 1 6 1662 809 282 52 19 chr4 141209589 141209802 -14420318 - ID_B1 SINE B4 -4 220 1 6 1662 556 271 156 0 chr4 141210582 141210774 -14419346 + ID_B1 SINE B4 2 223 -1 6 1662 788 118 8 0 chr4 141210774 141210901 -14419219 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 6 1662 1047 164 120 0 chr4 141210915 141211098 -14419022 + B3 SINE B2 3 207 -9 6 1662 807 127 24 0 chr4 141211119 141211245 -14418875 - B1_Mus1 SINE Alu 0 148 20 6 1662 24 0 0 0 chr4 141211250 141211274 -14418846 + AT_rich Low_complexity Low_complexity 1 24 0 6 1662 652 205 0 0 chr4 141211288 141211405 -14418715 + RSINE1 SINE B4 3 119 -46 6 1662 1280 34 0 0 chr4 141211405 141211553 -14418567 + B1_Mus1 SINE Alu 1 148 0 6 1662 28 61 0 0 chr4 141211622 141211671 -14418449 + AT_rich Low_complexity Low_complexity 1 49 0 6 1662 773 262 24 29 chr4 141211672 141211880 -14418240 - B3 SINE B2 -8 208 2 6 1662 297 0 0 0 chr4 141212540 141212573 -14417547 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1662 559 273 78 137 chr4 141212584 141212868 -14417252 - B4 SINE B4 -25 267 1 6 1662 229 307 158 0 chr4 141213170 141213271 -14416849 + MIRc SINE MIR 8 124 -144 6 1662 612 226 236 6 chr4 141213461 141213643 -14416477 + ID_B1 SINE B4 1 224 0 6 1662 1509 48 32 5 chr4 141213835 141214024 -14416096 + B2_Mm2 SINE B2 2 195 0 6 1662 1286 34 0 0 chr4 141214024 141214171 -14415949 + B1_Mm SINE Alu 1 147 0 6 1662 291 85 0 0 chr4 141214179 141214226 -14415894 + (A)n Simple_repeat Simple_repeat 1 47 0 6 1662 745 194 28 7 chr4 141215542 141215687 -14414433 + B1_Mur3 SINE Alu 2 149 0 6 1662 308 308 106 0 chr4 141216229 141216333 -14413787 + PB1 SINE Alu 5 119 -8 6 1662 780 185 13 40 chr4 141216353 141216505 -14413615 + B1_Mur3 SINE Alu 2 149 0 6 1662 568 252 8 8 chr4 141216527 141216655 -14413465 + ID_B1 SINE B4 5 132 -92 6 1662 385 247 22 11 chr4 141216653 141216678 -14413442 + ID SINE ID 58 83 -141 6 1662 252 326 10 80 chr4 141216678 141216778 -14413342 + B1F1 SINE Alu 1 93 -56 6 1662 239 289 12 0 chr4 141216818 141216907 -14413213 + ID4 SINE ID 2 91 -61 6 1662 412 262 9 36 chr4 141217411 141217522 -14412598 - B3A SINE B2 -87 111 4 6 1662 192 40 0 0 chr4 141217526 141217551 -14412569 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1662 1479 73 10 5 chr4 141217704 141217898 -14412222 - B2_Mm2 SINE B2 0 195 1 6 1662 238 191 29 14 chr4 141217918 141217987 -14412133 + T-rich Low_complexity Low_complexity 4 73 0 6 1662 1077 108 77 6 chr4 141218005 141218173 -14411947 - B2_Mm2 SINE B2 -14 181 2 6 1662 750 171 20 33 chr4 141218177 141218328 -14411792 - B1_Mur3 SINE Alu 0 149 1 6 1662 185 94 55 36 chr4 141218430 141218485 -14411635 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 6 1662 863 162 0 21 chr4 141218485 141218630 -14411490 - B1_Mur2 SINE Alu -1 148 7 6 1662 213 269 226 0 chr4 141218647 141218732 -14411388 + PB1D9 SINE Alu 1 106 -14 6 1662 558 0 0 0 chr4 141218732 141218794 -14411326 + (GAAAA)n Simple_repeat Simple_repeat 5 66 0 6 1662 510 285 53 0 chr4 141218806 141218957 -14411163 + RSINE1 SINE B4 3 161 -4 6 1662 243 0 0 0 chr4 141218974 141219001 -14411119 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1662 428 226 43 0 chr4 141219051 141219144 -14410976 - PB1D10 SINE Alu -19 98 2 6 1662 280 197 14 74 chr4 141219837 141219956 -14410164 + (CCG)n Simple_repeat Simple_repeat 3 113 0 6 1662 222 37 0 0 chr4 141219956 141219983 -14410137 + (CCTCG)n Simple_repeat Simple_repeat 4 30 0 6 1662 280 197 14 74 chr4 141219983 141220011 -14410109 + (CCG)n Simple_repeat Simple_repeat 2 29 0 6 1662 1783 132 124 50 chr4 141220937 141221323 -14408797 + MTC LTR MaLR 1 407 -14 6 1662 1192 55 7 0 chr4 141221323 141221469 -14408651 + B1_Mus1 SINE Alu 1 147 -1 6 1662 587 221 40 54 chr4 141221961 141222109 -14408011 + ID_B1 SINE B4 79 224 0 6 1662 1455 0 0 29 chr4 141222153 141222364 -14407756 + (TTTCC)n Simple_repeat Simple_repeat 1 204 0 6 1662 513 104 0 0 chr4 141222366 141222443 -14407677 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 6 1662 562 271 35 28 chr4 141222443 141222587 -14407533 - B1_Mur4 SINE Alu 0 150 6 6 1662 1143 62 7 7 chr4 141222633 141222779 -14407341 - B1_Mus2 SINE Alu 0 147 2 6 1662 371 232 49 0 chr4 141222789 141222892 -14407228 - PB1D7 SINE Alu -7 113 1 6 1662 192 163 0 0 chr4 141223235 141223278 -14406842 + GA-rich Low_complexity Low_complexity 3 45 0 6 1662 765 113 15 61 chr4 141223505 141223637 -14406483 - Lx5 LINE L1 -210 6840 6715 6 1662 435 160 5 0 chr4 141224106 141224185 -14405935 - Lx5 LINE L1 -368 6690 6584 6 1662 641 168 167 6 chr4 141224188 141224344 -14405776 + Lx5 LINE L1 6863 7043 -7 6 1662 1243 48 0 0 chr4 141224395 141224542 -14405578 + B1_Mus2 SINE Alu 1 147 0 6 1662 273 57 0 0 chr4 141224552 141224587 -14405533 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1662 22 35 0 0 chr4 141224591 141224620 -14405500 + AT_rich Low_complexity Low_complexity 1 29 0 6 1662 282 268 27 27 chr4 141224623 141224696 -14405424 + B4 SINE B4 2 74 -218 6 1662 462 267 0 28 chr4 141224705 141224813 -14405307 + RSINE1 SINE B4 44 148 -17 6 1662 25 51 0 0 chr4 141224829 141224868 -14405252 + AT_rich Low_complexity Low_complexity 1 39 0 6 1662 1215 49 0 0 chr4 141224873 141225015 -14405105 + B1_Mus1 SINE Alu 1 142 -6 6 1662 216 97 0 0 chr4 141225018 141225049 -14405071 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1662 243 61 0 0 chr4 141225193 141225226 -14404894 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 1662 357 342 104 13 chr4 141225226 141225376 -14404744 - ID_B1 SINE B4 -12 212 49 6 1662 590 228 122 6 chr4 141225376 141225548 -14404572 + B3A SINE B2 2 193 -5 6 1662 794 194 28 0 chr4 141225553 141225697 -14404423 + B1_Mur4 SINE Alu 3 150 0 6 1662 214 211 18 0 chr4 141225697 141225754 -14404366 + A-rich Low_complexity Low_complexity 5 62 0 6 1662 712 206 166 16 chr4 141226100 141226287 -14403833 + B3 SINE B2 2 216 0 6 1662 433 305 14 41 chr4 141226518 141226665 -14403455 + ID_B1 SINE B4 79 221 -3 6 1662 1376 50 66 0 chr4 141226665 141226846 -14403274 + B2_Mm2 SINE B2 1 193 -2 6 1662 845 203 96 10 chr4 141226865 141227064 -14403056 + B3 SINE B2 1 216 0 6 1662 949 218 24 5 chr4 141227451 141227658 -14402462 - B3 SINE B2 -3 213 3 6 1662 23 0 0 0 chr4 141227685 141227708 -14402412 + AT_rich Low_complexity Low_complexity 1 23 0 6 1662 423 230 0 0 chr4 141227733 141227807 -14402313 - B1F2 SINE Alu -74 75 2 6 1662 1048 48 28 0 chr4 141227819 141227964 -14402156 + (TTTTC)n Simple_repeat Simple_repeat 2 150 0 6 1662 513 175 37 46 chr4 141227964 141228072 -14402048 - PB1D9 SINE Alu -13 107 1 7 1662 908 139 0 0 chr4 141228124 141228261 -14401859 - B1_Mur4 SINE Alu -13 137 1 7 1662 248 350 48 0 chr4 141228728 141228743 -14401377 + B1F SINE Alu 10 117 -32 7 1662 328 250 68 45 chr4 141228743 141228831 -14401289 + ID_B1 SINE B4 106 195 -29 7 1662 671 197 35 21 chr4 141228951 141229096 -14401024 + B1F2 SINE Alu 3 149 0 7 1662 442 231 16 41 chr4 141229265 141229387 -14400733 + PB1D9 SINE Alu 1 119 -1 7 1662 1193 48 0 0 chr4 141229396 141229541 -14400579 + B1_Mus2 SINE Alu 1 145 -2 7 1662 30 0 0 0 chr4 141229541 141229571 -14400549 + AT_rich Low_complexity Low_complexity 1 30 0 7 1662 1039 89 6 6 chr4 141229584 141229742 -14400378 + (GAA)n Simple_repeat Simple_repeat 2 159 0 7 1662 220 282 25 13 chr4 141229748 141229827 -14400293 - L2a LINE L2 -330 3096 3017 7 1662 704 249 22 55 chr4 141230227 141230410 -14399710 - ID_B1 SINE B4 -1 223 47 7 1662 1261 93 49 0 chr4 141230465 141230648 -14399472 - B2_Mm2 SINE B2 -2 193 2 7 1662 733 259 68 5 chr4 141230832 141231038 -14399082 + ID_B1 SINE B4 1 219 -5 7 1662 615 244 18 36 chr4 141231100 141231266 -14398854 + ID_B1 SINE B4 62 224 0 7 1662 264 206 94 16 chr4 141231402 141231466 -14398654 - B1F SINE Alu -58 91 23 7 1662 237 292 114 34 chr4 141231606 141231755 -14398365 + MLT1J2 LTR MaLR 285 445 -3 7 1662 808 132 16 0 chr4 141232080 141232209 -14397911 + B1_Mur4 SINE Alu 6 136 -14 7 1662 416 259 64 18 chr4 141232217 141232327 -14397793 + PB1D10 SINE Alu 1 115 -2 7 1662 372 305 79 7 chr4 141232327 141232479 -14397641 + RSINE1 SINE B4 3 165 0 7 1662 252 246 35 0 chr4 141232530 141232587 -14397533 + MLT1J1 LTR MaLR 53 111 -333 7 1662 485 269 141 56 chr4 141232715 141232928 -14397192 - B4A SINE B4 0 292 62 7 1662 1106 148 82 0 chr4 141232970 141233166 -14396954 - URR1B DNA MER1_type 0 225 14 7 1662 384 279 7 17 chr4 141234912 141235028 -14395092 - ID4 SINE ID -28 124 12 7 1662 947 186 77 0 chr4 141235037 141235220 -14394900 - ID_B1 SINE B4 -4 220 24 7 1662 263 247 13 64 chr4 141235163 141235241 -14394879 - ID4_ SINE ID -3 80 7 7 1662 236 273 64 13 chr4 141236256 141236334 -14393786 - ID2 SINE ID 0 83 2 7 1662 327 216 273 0 chr4 141236398 141236486 -14393634 + PB1D10 SINE Alu 1 112 -5 7 1662 249 140 155 17 chr4 141237394 141237452 -14392668 - PB1D9 SINE Alu -7 113 48 7 1662 253 220 163 11 chr4 141237421 141237513 -14392607 - MT2B LTR ERVL -365 236 131 7 1662 230 318 72 9 chr4 141241839 141241950 -14388170 - PB1D9 SINE Alu -1 119 2 7 1662 588 223 30 15 chr4 141242053 141242185 -14387935 - B1F SINE Alu -15 134 1 7 1662 450 156 294 0 chr4 141243201 141243310 -14386810 - B1_Mur4 SINE Alu -1 149 9 7 1662 709 80 50 50 chr4 141243327 141243446 -14386674 - PB1D9 SINE Alu 0 120 2 7 1662 1642 31 5 0 chr4 141243466 141243657 -14386463 - B2_Mm1a SINE B2 0 193 2 7 1662 228 67 0 0 chr4 141243677 141243707 -14386413 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1662 1129 50 0 0 chr4 141243707 141243848 -14386272 - B1_Mm SINE Alu 0 147 7 7 1662 476 194 46 124 chr4 141243713 141243866 -14386254 - B4A SINE B4 -71 221 81 7 1662 1183 56 0 0 chr4 141244395 141244538 -14385582 - B1_Mus2 SINE Alu 0 147 5 7 1662 39 50 0 0 chr4 141244912 141244972 -14385148 + AT_rich Low_complexity Low_complexity 1 60 0 7 1662 949 157 7 0 chr4 141245843 141245990 -14384130 - B1_Mus1 SINE Alu 0 148 1 7 1662 734 97 52 9 chr4 141247207 141247322 -14382798 - PB1D9 SINE Alu 0 120 1 7 1662 591 200 64 7 chr4 141247418 141247559 -14382561 - B1_Mur1 SINE Alu 0 149 1 7 1662 312 304 43 22 chr4 141247565 141247703 -14382417 - B1F1 SINE Alu 0 149 9 7 1662 260 297 71 18 chr4 141248529 141248642 -14381478 - B1F SINE Alu -8 141 23 7 1662 306 266 73 21 chr4 141248887 141248983 -14381137 - PB1D10 SINE Alu 0 117 17 7 1662 951 172 182 54 chr4 141249668 141250124 -14379996 + Lx6 LINE L1 6905 7696 0 7 1662 666 243 59 6 chr4 141250133 141250303 -14379817 + B3 SINE B2 27 205 -11 7 1662 803 170 7 13 chr4 141250421 141250570 -14379550 - B1_Mus1 SINE Alu 0 148 1 7 1662 342 212 206 29 chr4 141250570 141250671 -14379449 - PB1D9 SINE Alu 0 120 1 7 1662 287 245 24 100 chr4 141250845 141251003 -14379117 + B1F2 SINE Alu 4 150 0 7 1662 1001 286 52 4 chr4 141251029 141251306 -14378814 + B4A SINE B4 4 292 0 7 1662 555 205 203 13 chr4 141251823 141251976 -14378144 + B2_Mm2 SINE B2 14 195 0 7 1662 979 53 114 0 chr4 141251979 141252110 -14378010 + B1_Mm SINE Alu 2 147 0 7 1662 306 67 0 0 chr4 141252110 141252155 -14377965 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 7 1662 493 216 29 58 chr4 141252162 141252329 -14377791 + B3A SINE B2 28 192 -3 7 1662 747 179 15 0 chr4 141252477 141252611 -14377509 - B1_Mur3 SINE Alu -13 136 1 7 1662 259 214 0 51 chr4 141252648 141252707 -14377413 + PB1D10 SINE Alu 62 117 0 7 1662 195 129 0 0 chr4 141252708 141252739 -14377381 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1662 503 316 25 37 chr4 141252953 141253114 -14377006 - B4A SINE B4 0 292 134 7 1662 476 269 90 39 chr4 141253383 141253515 -14376605 + B3 SINE B2 30 168 -48 7 1662 189 94 0 0 chr4 141253515 141253547 -14376573 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 7 1662 476 269 90 39 chr4 141253547 141253592 -14376528 + B3 SINE B2 169 216 0 7 1662 405 102 0 0 chr4 141253634 141253693 -14376427 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1662 240 111 0 0 chr4 141253957 141254002 -14376118 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 7 1662 219 229 48 16 chr4 141254075 141254137 -14375983 + ID4_ SINE ID 2 65 -18 7 1662 317 315 72 26 chr4 141254379 141254532 -14375588 + RSINE1 SINE B4 1 160 -5 7 1662 212 169 213 117 chr4 141255116 141255210 -14374910 - PB1D7 SINE Alu 0 120 18 7 1662 691 215 20 27 chr4 141255291 141255439 -14374681 + B1_Mur1 SINE Alu 1 147 -2 7 1662 458 294 119 40 chr4 141255540 141255742 -14374378 - ID_B1 SINE B4 -4 220 3 7 1662 607 235 84 32 chr4 141256247 141256401 -14373719 - ID_B1 SINE B4 -14 210 49 7 1662 235 292 41 14 chr4 141256666 141256739 -14373381 + ID2 SINE ID 3 77 -6 7 1662 226 259 92 100 chr4 141257005 141257125 -14372995 - ORR1A1-int LTR MaLR -679 1113 995 7 1662 273 263 0 120 chr4 141257309 141257417 -14372703 + B3A SINE B2 2 96 -102 7 1662 723 233 5 80 chr4 141257504 141257566 -14372554 + B2_Mm2 SINE B2 1 61 -134 7 1662 1474 68 15 15 chr4 141257566 141257761 -14372359 + B2_Mm2 SINE B2 1 195 0 7 1662 723 233 5 80 chr4 141257761 141257885 -14372235 + B2_Mm2 SINE B2 62 173 -22 7 1662 751 82 36 9 chr4 141257913 141258024 -14372096 - BC1_Mm scRNA scRNA -38 114 1 7 1662 603 211 151 33 chr4 141258067 141258244 -14371876 + B3 SINE B2 1 184 -11 7 1662 603 242 40 0 chr4 141258351 141258475 -14371645 - B3 SINE B2 -4 212 84 7 1662 471 299 30 0 chr4 141258687 141258821 -14371299 - B3A SINE B2 -39 159 22 7 1662 426 302 0 9 chr4 141259471 141259578 -14370542 - PB1D10 SINE Alu -10 107 2 7 1662 798 164 22 0 chr4 141259601 141259735 -14370385 - B1_Mur3 SINE Alu 0 149 13 7 1662 641 134 270 20 chr4 141259836 141259988 -14370132 - URR1B DNA MER1_type -1 224 35 7 1662 402 234 0 0 chr4 141259977 141260054 -14370066 + RSINE1 SINE B4 60 136 -29 7 1662 471 274 95 58 chr4 141260122 141260312 -14369808 + B3A SINE B2 2 198 0 7 1662 375 194 27 27 chr4 141260337 141260411 -14369709 + PB1D9 SINE Alu 46 119 -1 7 1662 363 193 180 11 chr4 141260756 141260845 -14369275 + PB1 SINE Alu 22 125 -2 7 1662 230 360 35 9 chr4 141261297 141261412 -14368708 - MER5B DNA MER1_type -60 118 1 7 1662 919 139 13 40 chr4 141262060 141262210 -14367910 + B1_Mus1 SINE Alu 1 146 -2 7 1662 798 286 55 29 chr4 141263249 141263523 -14366597 + B4 SINE B4 5 285 -7 7 1662 307 237 105 0 chr4 141263542 141263618 -14366502 + B1_Mus2 SINE Alu 1 84 -63 7 1662 258 330 124 0 chr4 141263618 141263635 -14366485 + B4A SINE B4 86 190 -102 7 1662 855 228 5 71 chr4 141264548 141264746 -14365374 + B3 SINE B2 5 189 -27 7 1662 421 200 52 10 chr4 141264726 141264822 -14365298 + ID_B1 SINE B4 118 217 -7 7 1662 689 200 36 29 chr4 141264832 141264971 -14365149 + B1_Mur3 SINE Alu 1 140 -9 7 1662 276 53 0 0 chr4 141264971 141265009 -14365111 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 7 1662 1060 149 35 6 chr4 141265091 141265260 -14364860 - ORR1C2 LTR MaLR 0 384 211 7 1662 234 265 0 0 chr4 141265258 141265307 -14364813 - RSINE1 SINE B4 -116 49 1 7 1662 742 230 48 18 chr4 141265328 141265496 -14364624 + B3 SINE B2 4 176 -40 7 1662 1963 89 53 30 chr4 141266295 141266596 -14363524 - L1Md_F2 LINE L1 -8 6574 6267 7 1662 242 282 18 60 chr4 141267422 141267535 -14362585 + PB1D10 SINE Alu 2 107 -13 7 1662 299 25 25 0 chr4 141267537 141267577 -14362543 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1662 703 159 0 0 chr4 141267755 141267868 -14362252 + B2_Mm2 SINE B2 1 113 -82 8 1662 1001 109 32 0 chr4 141267855 141268011 -14362109 + B2_Mm1t SINE B2 26 186 -7 8 1662 367 283 71 0 chr4 141268017 141268116 -14362004 + B3 SINE B2 101 206 -10 8 1662 859 277 192 4 chr4 141268177 141268442 -14361678 + Lx5 LINE L1 6732 7046 -4 8 1662 1001 90 162 6 chr4 141268596 141268763 -14361357 + B2_Mm2 SINE B2 2 194 -1 8 1662 186 312 62 0 chr4 141269505 141269585 -14360535 + L2 LINE L2 2821 2905 -514 8 1662 357 226 74 21 chr4 141269982 141270077 -14360043 + RLTR23 LTR ERV1 331 430 0 8 1662 238 284 40 0 chr4 141270249 141270323 -14359797 + ID4 SINE ID 2 78 -5 8 1662 248 177 127 16 chr4 141271241 141271304 -14358816 - BC1_Mm scRNA scRNA -68 84 15 8 1662 437 167 86 32 chr4 141271540 141271633 -14358487 + B1_Mur4 SINE Alu 53 150 0 8 1662 1203 54 0 0 chr4 141271643 141271790 -14358330 + B1_Mus2 SINE Alu 1 147 0 8 1662 186 71 0 0 chr4 141271790 141271818 -14358302 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1662 242 299 0 0 chr4 141272174 141272241 -14357879 + ID4 SINE ID 1 67 -16 8 1662 207 0 0 0 chr4 141272607 141272630 -14357490 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1662 226 246 0 103 chr4 141272768 141272836 -14357284 - B3 SINE B2 -1 215 155 8 1662 878 261 5 15 chr4 141272925 141273127 -14356993 - B3 SINE B2 -16 200 1 8 1662 741 188 20 59 chr4 141273158 141273311 -14356809 + B1_Mur3 SINE Alu 1 147 -2 8 1662 390 42 0 0 chr4 141273318 141273366 -14356754 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 8 1662 233 311 214 6 chr4 141273674 141273739 -14356381 - MLT2B2 LTR ERVL -312 203 1 8 1662 286 316 19 78 chr4 141273739 141273842 -14356278 - MTEa LTR MaLR -282 97 1 8 1662 218 244 281 0 chr4 141273889 141273971 -14356149 + PB1D10 SINE Alu 5 109 -8 8 1662 413 195 12 24 chr4 141274041 141274125 -14355995 + PB1D10 SINE Alu 21 103 -14 8 1662 1227 48 0 0 chr4 141274469 141274616 -14355504 - B1_Mus2 SINE Alu 0 147 1 8 1662 733 91 124 0 chr4 141274616 141274737 -14355383 + B1_Mur4 SINE Alu 14 149 -1 8 1662 412 254 43 17 chr4 141274893 141275009 -14355111 - PB1D7 SINE Alu 0 120 2 8 1662 337 263 0 0 chr4 141275024 141275100 -14355020 - B1_Mur2 SINE Alu -11 138 63 8 1662 477 0 0 0 chr4 141275245 141275298 -14354822 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 8 1662 808 188 120 31 chr4 141275961 141276153 -14353967 - B3 SINE B2 -7 209 1 8 1662 740 159 32 0 chr4 141276194 141276320 -14353800 - B1_Mur3 SINE Alu -19 130 1 8 1662 261 0 0 0 chr4 141277392 141277421 -14352699 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1662 376 270 35 18 chr4 141277471 141277572 -14352548 + PB1D7 SINE Alu 5 107 -13 8 1662 215 51 0 71 chr4 141277572 141277614 -14352506 + (CAA)n Simple_repeat Simple_repeat 1 39 0 8 1662 376 270 35 18 chr4 141277614 141277625 -14352495 + PB1D7 SINE Alu 108 118 -2 8 1662 373 224 24 57 chr4 141277648 141277771 -14352349 + PB1D9 SINE Alu 1 119 -1 8 1662 206 195 0 24 chr4 141278535 141278577 -14351543 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1662 24 53 0 0 chr4 141278890 141278928 -14351192 + GC_rich Low_complexity Low_complexity 1 38 0 8 1662 188 135 0 26 chr4 141279109 141279147 -14350973 + (CCCGG)n Simple_repeat Simple_repeat 1 37 0 8 1662 216 0 0 0 chr4 141279218 141279242 -14350878 + (CTCG)n Simple_repeat Simple_repeat 2 25 0 8 1662 30 0 0 0 chr4 141279370 141279400 -14350720 + GC_rich Low_complexity Low_complexity 1 30 0 8 1662 215 273 61 102 chr4 141279858 141279888 -14350232 + B4 SINE B4 55 80 -212 8 1662 363 269 38 9 chr4 141279888 141279993 -14350127 + PB1D10 SINE Alu 3 110 -7 8 1662 256 118 0 0 chr4 141280177 141280211 -14349909 + PB1D7 SINE Alu 11 44 -76 8 1662 972 202 174 94 chr4 141280211 141280406 -14349714 + RMER10B LTR ERVL 1 234 -164 8 1662 651 26 0 0 chr4 141280406 141280483 -14349637 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 8 1662 972 202 174 94 chr4 141280483 141280637 -14349483 + RMER10B LTR ERVL 235 378 -20 8 1662 594 165 0 32 chr4 141281100 141281208 -14348912 + B1_Mur4 SINE Alu 1 102 -47 8 1662 803 219 45 35 chr4 141281208 141281407 -14348713 - B3 SINE B2 -12 204 4 8 1662 730 180 70 8 chr4 141281417 141281546 -14348574 - B1_Mur2 SINE Alu -6 143 7 8 1662 730 71 7 66 chr4 141282394 141282520 -14347600 + L1Md_F2 LINE L1 6455 6573 -9 8 1662 1585 32 21 0 chr4 141282520 141282709 -14347411 + B2_Mm1a SINE B2 1 193 0 8 1662 828 246 76 19 chr4 141282822 141283033 -14347087 + ID_B1 SINE B4 1 223 -1 8 1662 198 0 0 0 chr4 141283427 141283449 -14346671 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1662 595 311 102 90 chr4 141283516 141283870 -14346250 + MLT1G3 LTR MaLR 182 539 -56 8 1662 279 313 0 80 chr4 141284184 141284309 -14345811 + MTEb LTR MaLR 251 365 -14 8 1662 550 240 0 0 chr4 141284322 141284426 -14345694 + PB1D9 SINE Alu 1 104 -16 8 1662 243 0 0 0 chr4 141284432 141284459 -14345661 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1662 618 165 18 0 chr4 141284469 141284578 -14345542 - B3 SINE B2 -19 197 87 8 1662 693 88 10 19 chr4 141284574 141284678 -14345442 + B1_Mus2 SINE Alu 45 147 0 8 1662 402 208 0 0 chr4 141284684 141284756 -14345364 - B3 SINE B2 -118 98 27 8 1662 212 254 0 82 chr4 141284772 141284789 -14345331 - B4 SINE B4 -225 67 1 8 1662 283 214 54 0 chr4 141284789 141284845 -14345275 - B3 SINE B2 -157 59 1 8 1662 690 258 16 37 chr4 141284851 141285093 -14345027 + L1MB8 LINE L1 5851 6087 -91 8 1662 432 221 18 63 chr4 141285097 141285208 -14344912 + PB1D10 SINE Alu 1 106 -11 8 1662 480 264 70 23 chr4 141285208 141285336 -14344784 + B1_Mm SINE Alu 2 135 -12 8 1662 513 324 57 10 chr4 141285639 141285848 -14344272 - MIR SINE MIR -11 251 33 8 1662 472 207 53 26 chr4 141285855 141285969 -14344151 - PB1D10 SINE Alu 0 117 1 8 1662 209 305 63 72 chr4 141286038 141286205 -14343915 - MIRc SINE MIR -40 228 51 8 1662 454 163 42 42 chr4 141286205 141286301 -14343819 + B3A SINE B2 6 101 -97 8 1662 417 257 19 19 chr4 141286321 141286428 -14343692 + B3A SINE B2 88 194 -4 8 1662 423 98 0 0 chr4 141286647 141286708 -14343412 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1662 237 221 58 11 chr4 141286723 141286810 -14343310 - RSINE1 SINE B4 -7 158 68 8 1662 514 208 47 16 chr4 141286820 141286947 -14343173 - RSINE1 SINE B4 -31 134 4 8 1662 900 139 29 0 chr4 141286983 141287120 -14343000 - B1_Mur3 SINE Alu -6 143 3 8 1662 355 261 103 17 chr4 141287249 141287366 -14342754 - B1_Mur1 SINE Alu 0 149 23 8 1662 180 0 0 0 chr4 141287609 141287629 -14342491 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1662 568 196 26 18 chr4 141287634 141287748 -14342372 - B1_Mur2 SINE Alu -2 147 33 8 1662 930 43 0 0 chr4 141288094 141288209 -14341911 - B1_Mus1 SINE Alu 0 148 34 8 1662 483 167 229 16 chr4 141288248 141288370 -14341750 + B1F2 SINE Alu 2 149 0 8 1662 1361 52 6 23 chr4 141288399 141288576 -14341544 + B2_Mm2 SINE B2 3 176 -19 8 1662 736 125 8 8 chr4 141288582 141288711 -14341409 + (GAA)n Simple_repeat Simple_repeat 1 129 0 8 1662 497 82 319 26 chr4 141288824 141288937 -14341183 - B2_Mm2 SINE B2 -3 192 47 8 1662 1341 96 11 0 chr4 141288965 141289142 -14340978 - B2_Mm1t SINE B2 -14 179 1 8 1662 28 0 0 0 chr4 141289203 141289231 -14340889 + AT_rich Low_complexity Low_complexity 1 28 0 8 1662 427 244 116 47 chr4 141289263 141289392 -14340728 + B1_Mur4 SINE Alu 7 144 -6 8 1662 508 276 20 33 chr4 141289475 141289625 -14340495 + B1F SINE Alu 1 148 -1 8 1662 1658 26 5 0 chr4 141289662 141289852 -14340268 - B2_Mm1t SINE B2 -1 192 2 8 1662 219 373 51 0 chr4 141289958 141290076 -14340044 - ID_B1 SINE B4 -3 221 98 8 1662 399 191 191 45 chr4 141290152 141290262 -14339858 - B3 SINE B2 -6 210 85 8 1662 299 180 0 47 chr4 141290265 141290329 -14339791 - PB1D10 SINE Alu -56 61 1 8 1662 297 294 97 10 chr4 141290538 141290641 -14339479 + PB1D10 SINE Alu 5 116 -1 8 1662 425 192 0 13 chr4 141291470 141291549 -14338571 + ID4 SINE ID 5 82 -1 8 1662 369 141 0 45 chr4 141291710 141291777 -14338343 + ID4 SINE ID 16 79 -4 8 1662 599 279 97 16 chr4 141291717 141291903 -14338217 + ID_B1 SINE B4 24 224 0 8 1662 580 197 53 93 chr4 141291905 141292056 -14338064 + B1_Mur2 SINE Alu 5 149 0 8 1662 423 233 0 82 chr4 141292087 141292185 -14337935 + B3A SINE B2 1 90 -108 8 1662 765 177 54 0 chr4 141292267 141292397 -14337723 + B1_Mus1 SINE Alu 1 137 -11 8 1662 571 303 28 69 chr4 141292476 141292623 -14337497 - L1MEc LINE L1 -5973 427 293 8 1662 1233 143 103 5 chr4 141292623 141292827 -14337293 - URR1A DNA MER1_type 0 226 3 8 1662 571 303 28 69 chr4 141292827 141292970 -14337150 - L1MEc LINE L1 -6108 292 149 8 1662 378 0 0 0 chr4 141293021 141293063 -14337057 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1662 542 165 31 0 chr4 141293090 141293187 -14336933 - PB1D9 SINE Alu -15 105 6 8 1662 312 291 0 72 chr4 141293093 141293204 -14336916 - MT2B LTR ERVL -346 255 153 8 1662 992 48 0 0 chr4 141293272 141293396 -14336724 + B1_Mm SINE Alu 24 147 0 8 1662 1184 140 6 6 chr4 141293401 141293581 -14336539 - B2_Mm2 SINE B2 -14 181 2 8 1662 700 228 110 7 chr4 141293626 141293772 -14336348 + B3 SINE B2 1 161 -55 8 1662 894 138 8 0 chr4 141293762 141293892 -14336228 + B1_Mus2 SINE Alu 11 141 -6 9 1662 1452 88 16 0 chr4 141294270 141294462 -14335658 + B2_Mm2 SINE B2 1 195 0 9 1662 260 164 17 0 chr4 141294479 141294528 -14335592 + ID4 SINE ID 28 80 -3 9 1662 544 223 0 59 chr4 141295048 141295167 -14334953 + B1_Mur1 SINE Alu 2 113 -36 9 1662 1248 48 0 0 chr4 141295372 141295518 -14334602 - B1_Mm SINE Alu 0 147 2 9 207 983 65 0 0 chr4 141295519 141295643 -14334477 + B1_Mus1 SINE Alu 15 138 -10 9 1663 475 286 75 0 chr4 141295659 141295820 -14334300 + MER31A LTR ERV1 79 251 -234 9 1663 1126 215 59 124 chr4 141295823 141296194 -14333926 + MTD LTR MaLR 25 371 -48 9 1663 730 69 180 49 chr4 141296482 141296604 -14333516 + B1_Mus1 SINE Alu 2 139 -9 9 1663 243 0 0 0 chr4 141296604 141296631 -14333489 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1663 453 244 44 187 chr4 141296871 141296986 -14333134 - ID_B1 SINE B4 0 224 129 9 1663 460 123 0 0 chr4 141296986 141297051 -14333069 - B1_Mus2 SINE Alu -82 65 1 9 1663 453 244 44 187 chr4 141297051 141297199 -14332921 - ID_B1 SINE B4 0 128 5 9 1663 230 189 19 19 chr4 141297210 141297264 -14332856 + MLT1A1 LTR MaLR 350 403 -5 9 1663 307 146 0 0 chr4 141297307 141297355 -14332765 - B1_Mus2 SINE Alu -98 49 2 9 1663 771 221 67 0 chr4 141297395 141297544 -14332576 + B3 SINE B2 1 159 -57 9 1663 663 148 129 30 chr4 141297545 141297677 -14332443 + B1_Mus2 SINE Alu 1 145 -2 9 1663 359 316 0 33 chr4 141297696 141297817 -14332303 + PB1D10 SINE Alu 1 117 0 9 1663 279 0 0 0 chr4 141298753 141298784 -14331336 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1663 40 0 0 0 chr4 141298826 141298866 -14331254 + AT_rich Low_complexity Low_complexity 1 40 0 9 1663 1275 34 0 0 chr4 141298868 141299014 -14331106 - B1_Mus1 SINE Alu -2 146 1 9 1663 2406 60 31 16 chr4 141299046 141299186 -14330934 + ORR1A2 LTR MaLR 1 141 -186 9 1663 2884 52 145 139 chr4 141299186 141299695 -14330425 - RLTR1B LTR ERV1 0 512 1 9 1663 2406 60 31 16 chr4 141299695 141299876 -14330244 + ORR1A2 LTR MaLR 142 327 0 9 1663 1012 181 45 0 chr4 141299876 141300053 -14330067 - B3 SINE B2 -31 185 1 9 1663 235 161 18 18 chr4 141300065 141300122 -14329998 + CT-rich Low_complexity Low_complexity 5 61 0 9 1663 640 198 24 16 chr4 141300124 141300247 -14329873 - B1_Mm SINE Alu -21 126 3 9 1663 219 147 0 0 chr4 141300271 141300305 -14329815 - PB1D7 SINE Alu -86 34 1 9 1663 1196 68 0 0 chr4 141300537 141300683 -14329437 + B1_Mus1 SINE Alu 3 148 0 9 1663 207 88 0 0 chr4 141300726 141300760 -14329360 + (C)n Simple_repeat Simple_repeat 1 34 0 9 1663 189 0 0 0 chr4 141300790 141300811 -14329309 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 9 1663 872 132 7 0 chr4 141301090 141301226 -14328894 - B1_Mur4 SINE Alu -13 137 1 9 1663 434 277 183 8 chr4 141301316 141301447 -14328673 - RSINE1 SINE B4 -4 161 8 9 1663 1073 53 0 29 chr4 141301609 141301746 -14328374 + B1_Mus1 SINE Alu 4 136 -12 9 1663 516 59 0 0 chr4 141301746 141301814 -14328306 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 9 1663 438 258 52 78 chr4 141301924 141302117 -14328003 - B3A SINE B2 -9 189 2 9 1663 652 147 16 33 chr4 141302140 141302323 -14327797 + (TA)n Simple_repeat Simple_repeat 1 180 0 9 1663 324 238 248 0 chr4 141302327 141302428 -14327692 + B1F SINE Alu 24 149 0 9 1663 223 271 100 0 chr4 141303697 141303767 -14326353 + ID4 SINE ID 5 81 -2 9 1663 263 320 69 62 chr4 141303845 141303873 -14326247 + ID_B1 SINE B4 52 212 -12 9 1663 352 246 83 45 chr4 141303873 141304005 -14326115 + B1F SINE Alu 1 137 -12 9 1663 658 120 0 0 chr4 141303944 141304036 -14326084 - B1_Mur2 SINE Alu -41 108 17 9 1663 1005 213 18 45 chr4 141304055 141304276 -14325844 - B3 SINE B2 -1 215 1 9 1663 682 153 117 44 chr4 141304296 141304433 -14325687 + B1_Mur3 SINE Alu 1 147 -2 9 1663 342 0 0 0 chr4 141304466 141304504 -14325616 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1663 666 306 42 19 chr4 141304560 141304773 -14325347 - B4 SINE B4 -64 228 11 9 1663 21 0 0 0 chr4 141304776 141304797 -14325323 + AT_rich Low_complexity Low_complexity 1 21 0 9 1663 558 234 80 0 chr4 141304864 141305001 -14325119 + B1F SINE Alu 1 148 -1 9 1663 1443 69 16 0 chr4 141305044 141305232 -14324888 + B2_Mm2 SINE B2 4 194 -1 9 1663 340 252 152 51 chr4 141305968 141306185 -14323935 + MER96B DNA hAT 114 352 -65 9 1663 198 0 0 0 chr4 141306185 141306207 -14323913 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1663 270 296 0 58 chr4 141306336 141306526 -14323594 + CT-rich Low_complexity Low_complexity 1 179 0 9 1663 223 313 0 68 chr4 141306518 141306710 -14323410 + C-rich Low_complexity Low_complexity 2 180 0 9 1663 221 335 0 24 chr4 141306735 141306903 -14323217 + CT-rich Low_complexity Low_complexity 1 164 0 9 1663 688 245 45 0 chr4 141307051 141307206 -14322914 - RSINE1 SINE B4 -1 164 3 9 1663 403 281 8 62 chr4 141307610 141307739 -14322381 + PB1 SINE Alu 4 125 -2 9 1663 402 336 67 86 chr4 141307816 141308236 -14321884 - RMER10A LTR ERVL -12 430 19 9 1663 736 100 0 16 chr4 141308385 141308507 -14321613 + (GGA)n Simple_repeat Simple_repeat 3 122 0 9 1663 1354 86 0 36 chr4 141308539 141308733 -14321387 + B2_Mm2 SINE B2 2 188 -7 9 1663 426 279 60 37 chr4 141308740 141308874 -14321246 + RSINE1 SINE B4 3 139 -26 9 1663 342 67 0 0 chr4 141308886 141308931 -14321189 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1663 234 0 0 0 chr4 141308931 141308957 -14321163 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1663 1495 138 127 174 chr4 141309252 141309338 -14320782 - RMER6A LTR ERVK -2 754 659 9 1663 1700 31 0 0 chr4 141309338 141309529 -14320591 - B2_Mm1t SINE B2 -1 192 2 9 1663 1495 138 127 174 chr4 141309529 141309651 -14320469 - RMER6A LTR ERVK -98 658 589 9 1663 1363 81 43 0 chr4 141309651 141309837 -14320283 - B2_Mm2 SINE B2 0 195 2 9 1663 1495 138 127 174 chr4 141309837 141310093 -14320027 - RMER6A LTR ERVK -168 588 311 9 1663 1331 67 28 0 chr4 141310094 141310272 -14319848 - B2_Mm1a SINE B2 0 193 11 9 1663 1818 116 75 13 chr4 141310269 141310575 -14319545 - RMER6A LTR ERVK -431 325 1 9 1663 315 0 0 0 chr4 141310991 141311026 -14319094 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1663 345 310 190 0 chr4 141312011 141312127 -14317993 + ID_B1 SINE B4 84 221 -3 9 1663 483 250 29 0 chr4 141312135 141312239 -14317881 + RSINE1 SINE B4 3 109 -56 9 1663 207 0 0 0 chr4 141312262 141312285 -14317835 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1663 378 0 0 0 chr4 141312285 141312326 -14317794 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1663 406 206 50 143 chr4 141312427 141312546 -14317574 - PB1D7 SINE Alu -10 110 3 9 1663 924 164 7 0 chr4 141312750 141312890 -14317230 - B1_Mur2 SINE Alu -5 144 4 9 1663 499 238 37 44 chr4 141312936 141313072 -14317048 - RSINE1 SINE B4 -28 137 3 9 1663 1252 48 0 0 chr4 141313523 141313670 -14316450 - B1_Mus1 SINE Alu 0 148 2 9 1663 1218 62 0 7 chr4 141313904 141314051 -14316069 - B1_Mm SINE Alu 0 147 2 9 1663 514 234 40 60 chr4 141315181 141315331 -14314789 - B3 SINE B2 -67 149 3 9 1663 1033 73 15 7 chr4 141315344 141315481 -14314639 - B1_Mur4 SINE Alu -12 138 1 9 1663 493 238 0 45 chr4 141315535 141315645 -14314475 + B1F1 SINE Alu 13 117 0 9 1663 526 218 45 9 chr4 141316532 141316643 -14313477 - ID_B1 SINE B4 -23 201 87 9 1663 26 0 0 0 chr4 141316676 141316702 -14313418 + GC_rich Low_complexity Low_complexity 1 26 0 9 1663 270 258 0 29 chr4 141316706 141316774 -14313346 - ID4 SINE ID -13 70 5 9 1663 192 40 0 0 chr4 141316792 141316817 -14313303 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 9 1663 278 238 50 0 chr4 141317289 141317369 -14312751 + B4A SINE B4 84 167 -125 9 1663 543 169 0 10 chr4 141317301 141317397 -14312723 + PB1D10 SINE Alu 12 106 -11 9 1663 234 0 0 0 chr4 141317397 141317423 -14312697 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 9 1663 189 0 0 0 chr4 141319962 141319983 -14310137 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 9 1663 266 305 36 54 chr4 141320002 141320113 -14310007 + B1F2 SINE Alu 5 114 -35 9 1663 353 324 56 42 chr4 141320029 141320106 -14310014 + ID_B1 SINE B4 1 181 -43 9 1663 692 168 32 0 chr4 141320106 141320231 -14309889 + B1_Mur3 SINE Alu 1 129 -20 9 1663 353 324 56 42 chr4 141320231 141320245 -14309875 + ID_B1 SINE B4 182 219 -5 9 1663 468 48 0 0 chr4 141320406 141320469 -14309651 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1663 416 302 9 0 chr4 141320721 141320827 -14309293 + ID_B1 SINE B4 90 196 -28 9 1663 204 40 0 0 chr4 141321302 141321327 -14308793 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1663 1302 20 0 0 chr4 141321327 141321474 -14308646 - B1_Mus2 SINE Alu 0 147 1 9 1663 1383 35 98 6 chr4 141321480 141321500 -14308620 - B2_Mm2 SINE B2 -5 190 154 9 1663 240 35 0 0 chr4 141321500 141321529 -14308591 + (TA)n Simple_repeat Simple_repeat 2 30 0 9 1663 1383 35 98 6 chr4 141321529 141321681 -14308439 - B2_Mm2 SINE B2 -42 153 2 9 1663 345 252 62 18 chr4 141321703 141321816 -14308304 + B3A SINE B2 81 198 0 9 1663 658 176 144 0 chr4 141322040 141322165 -14307955 - B1_Mur1 SINE Alu -6 143 1 9 1663 228 219 0 0 chr4 141322246 141322287 -14307833 + ID4_ SINE ID 38 78 -5 9 1663 863 232 113 14 chr4 141323065 141323338 -14306782 + MTD LTR MaLR 8 383 -36 9 1663 1278 80 11 6 chr4 141324120 141324296 -14305824 + B2_Mm2 SINE B2 1 177 -18 9 1663 331 322 0 22 chr4 141324632 141324721 -14305399 - PB1 SINE Alu -8 119 33 9 1663 401 156 260 0 chr4 141324748 141324844 -14305276 + Lx9 LINE L1 7345 7465 -179 1 1663 192 97 0 0 chr4 141324848 141324879 -14305241 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1663 218 231 0 0 chr4 141324917 141324956 -14305164 - B3A SINE B2 -158 40 2 1 1663 374 220 88 20 chr4 141324959 141325061 -14305059 - PB1D10 SINE Alu 0 117 9 1 1663 281 354 12 12 chr4 141325257 141325340 -14304780 - ID2 SINE ID 0 83 1 1 1663 513 260 19 0 chr4 141326559 141326663 -14303457 - RSINE1 SINE B4 -57 108 3 1 1663 241 286 0 0 chr4 141327255 141327318 -14302802 + ID4_ SINE ID 2 64 -19 1 1663 581 218 30 0 chr4 141327368 141327501 -14302619 - B1_Mur1 SINE Alu 0 149 1 1 1663 714 244 75 0 chr4 141327511 141327712 -14302408 - ID_B1 SINE B4 -8 216 1 1 1663 482 231 65 0 chr4 141328012 141328120 -14302000 + RSINE1 SINE B4 3 117 -48 1 1663 1000 71 0 0 chr4 141328188 141328315 -14301805 - B1_Mus1 SINE Alu -21 127 1 1 1663 466 210 58 101 chr4 141328194 141328332 -14301788 - MT2B LTR ERVL -323 278 147 1 1663 437 294 80 16 chr4 141328402 141328589 -14301531 - ID_B1 SINE B4 -21 203 5 1 1663 944 166 48 42 chr4 141329042 141329231 -14300889 + B2_Mm2 SINE B2 3 192 -3 1 1663 441 0 0 0 chr4 141329231 141329280 -14300840 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1663 299 182 0 18 chr4 141329301 141329357 -14300763 - B3 SINE B2 -77 139 85 1 1663 279 0 0 0 chr4 141329359 141329390 -14300730 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1663 299 182 0 18 chr4 141329409 141329465 -14300655 - B3 SINE B2 -77 139 85 1 1663 441 0 0 0 chr4 141329465 141329514 -14300606 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1663 684 209 13 73 chr4 141329533 141329683 -14300437 - B3A SINE B2 -57 141 1 1 1663 520 198 35 35 chr4 141329736 141329851 -14300269 + PB1D9 SINE Alu 5 119 -1 1 1663 283 259 63 6 chr4 141329869 141329937 -14300183 - B1F1 SINE Alu -217 78 12 1 1663 180 152 0 0 chr4 141330077 141330110 -14300010 + CT-rich Low_complexity Low_complexity 3 35 0 1 1663 516 282 54 40 chr4 141330117 141330265 -14299855 - RSINE1 SINE B4 -6 159 10 1 1663 426 53 0 0 chr4 141330810 141330867 -14299253 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1663 725 214 50 0 chr4 141331435 141331575 -14298545 - B3 SINE B2 0 216 70 1 1663 520 128 64 0 chr4 141331628 141331722 -14298398 - B1_Mur1 SINE Alu -6 143 44 1 1663 240 262 11 77 chr4 141331658 141331749 -14298371 - RLTR25B LTR ERVK -521 507 423 1 1663 280 165 24 50 chr4 141331998 141332077 -14298043 + B3A SINE B2 2 80 -115 1 1663 312 230 191 82 chr4 141332095 141332242 -14297878 - RSINE1 SINE B4 0 165 3 1 1663 537 209 0 0 chr4 141332267 141332358 -14297762 - PB1D9 SINE Alu -26 94 4 1 1663 365 213 0 122 chr4 141332272 141332379 -14297741 - MT2B LTR ERVL -357 244 151 1 1663 371 252 171 0 chr4 141333258 141333369 -14296751 + RSINE1 SINE B4 3 132 -33 1 1663 1246 48 0 0 chr4 141333377 141333522 -14296598 - B1_Mus2 SINE Alu 0 147 3 1 1663 1342 90 17 6 chr4 141333525 141333703 -14296417 - B2_Mm2 SINE B2 -15 180 1 1 1663 423 0 0 0 chr4 141333719 141333766 -14296354 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1663 494 273 22 43 chr4 141333992 141334130 -14295990 + RSINE1 SINE B4 13 147 -18 1 1663 236 93 47 0 chr4 141334154 141334197 -14295923 + (CAATA)n Simple_repeat Simple_repeat 5 49 0 1 1663 567 235 133 18 chr4 141334201 141334366 -14295754 + B3 SINE B2 1 184 -32 1 1663 672 156 86 29 chr4 141334367 141334485 -14295635 + B1_Mur1 SINE Alu 3 119 -30 1 1663 2183 138 23 59 chr4 141334485 141334877 -14295243 - ORR1C1 LTR MaLR 0 378 1 1 1663 672 156 86 29 chr4 141334877 141334897 -14295223 + B1_Mur1 SINE Alu 120 149 0 1 1663 243 88 0 0 chr4 141334953 141334987 -14295133 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1 1663 666 37 0 0 chr4 141334987 141335068 -14295052 + (TCC)n Simple_repeat Simple_repeat 2 82 0 1 1663 699 252 7 13 chr4 141335071 141335220 -14294900 - B1_Mur1 SINE Alu -1 148 1 1 1663 371 279 179 51 chr4 141335245 141335506 -14294614 + B4A SINE B4 1 277 -15 1 1663 271 282 115 12 chr4 141335794 141335959 -14294161 + L2 LINE L2 2457 2638 -781 1 1663 222 37 0 0 chr4 141335993 141336020 -14294100 + (TCC)n Simple_repeat Simple_repeat 1 27 0 1 1663 273 309 20 41 chr4 141336023 141336121 -14293999 - ID_B1 SINE B4 -48 176 81 1 1663 375 285 168 15 chr4 141336123 141336319 -14293801 + L2 LINE L2 2701 2926 -493 1 1663 772 161 16 0 chr4 141336418 141336542 -14293578 - B1_Mur3 SINE Alu -23 126 1 1 1663 241 197 15 15 chr4 141336631 141336698 -14293422 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1663 573 189 0 0 chr4 141336860 141336955 -14293165 + B1_Mur2 SINE Alu 54 148 -1 1 1663 528 297 162 4 chr4 141337151 141337391 -14292729 - MLT1D LTR MaLR -2 503 226 1 1663 426 179 198 0 chr4 141337384 141337490 -14292630 + RSINE1 SINE B4 37 163 -2 1 1663 1246 173 5 0 chr4 141337926 141338123 -14291997 + B3 SINE B2 5 202 -14 1 1663 1169 62 0 0 chr4 141338194 141338338 -14291782 + B1_Mus2 SINE Alu 3 146 -1 1 1663 733 223 19 92 chr4 141338416 141338623 -14291497 + B3 SINE B2 17 208 -8 1 1663 332 210 37 12 chr4 141339092 141339174 -14290946 - BC1_Mm scRNA scRNA -67 85 2 1 1663 303 252 89 80 chr4 141339299 141339411 -14290709 + RSINE1 SINE B4 53 165 0 1 1663 444 180 112 0 chr4 141339726 141339815 -14290305 - RSINE1 SINE B4 -58 107 9 1 1663 346 275 153 32 chr4 141340318 141340442 -14289678 - B4A SINE B4 -2 290 152 1 1663 321 232 95 0 chr4 141341342 141341437 -14288683 - PB1D7 SINE Alu -6 114 11 1 1663 261 368 9 0 chr4 141341564 141341670 -14288450 - PB1D10 SINE Alu -9 108 2 1 1663 650 217 22 0 chr4 141341686 141341824 -14288296 - B1F2 SINE Alu -3 146 6 1 1663 303 324 0 139 chr4 141341692 141341900 -14288220 - MT2B LTR ERVL -299 285 107 1 1663 189 241 51 17 chr4 141343446 141343505 -14286615 - L3 LINE CR1 -2293 2196 2136 1 1663 519 165 119 0 chr4 141343931 141344052 -14286068 + B1_Mur1 SINE Alu 9 142 -7 1 1663 732 224 26 18 chr4 141344221 141344406 -14285714 + B3A SINE B2 1 195 0 1 1663 830 169 8 30 chr4 141344419 141344553 -14285567 + B1_Mus1 SINE Alu 1 131 -17 1 1663 22 35 0 0 chr4 141346393 141346422 -14283698 + GC_rich Low_complexity Low_complexity 1 29 0 1 1663 391 243 124 19 chr4 141346977 141347082 -14283038 - MIR3 SINE MIR -3 205 90 1 1663 1144 65 0 0 chr4 141347160 141347299 -14282821 + B1_Mm SINE Alu 1 139 -8 1 1663 366 23 0 0 chr4 141347299 141347342 -14282778 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1663 858 171 7 40 chr4 141347504 141347656 -14282464 - B1_Mur1 SINE Alu -2 147 1 1 1663 227 339 61 26 chr4 141347663 141347817 -14282303 + L2b LINE L2 3258 3412 -14 1 1663 896 133 72 39 chr4 141348485 141348665 -14281455 - B2_Mm2 SINE B2 -8 187 2 1 1663 1214 101 17 6 chr4 141348677 141348857 -14281263 - B2_Mm1t SINE B2 -7 186 5 1 1663 246 62 0 0 chr4 141349607 141349639 -14280481 + (CGGGG)n Simple_repeat Simple_repeat 5 36 0 1 1663 214 306 39 64 chr4 141350214 141350335 -14279785 + MIR SINE MIR 51 184 -92 1 1663 631 229 7 7 chr4 141351226 141351367 -14278753 + ID_B1 SINE B4 84 224 0 1 1663 573 221 171 9 chr4 141351371 141351534 -14278586 + B3 SINE B2 2 188 -10 1 1663 353 97 32 0 chr4 141351534 141351596 -14278524 + (CATA)n Simple_repeat Simple_repeat 2 65 0 1 1663 550 237 160 34 chr4 141351596 141351607 -14278513 + B3A SINE B2 189 198 0 1 1663 459 203 199 18 chr4 141351628 141351795 -14278325 + ID_B1 SINE B4 12 208 -16 1 1663 231 163 20 0 chr4 141352222 141352271 -14277849 + B1F2 SINE Alu 3 52 -97 1 1663 309 351 66 6 chr4 141353312 141353478 -14276642 - L1ME2 LINE L1 -189 5975 5800 1 1663 1214 202 134 0 chr4 141353517 141353779 -14276341 - MTD LTR MaLR -116 303 7 1 1663 1415 68 17 0 chr4 141354013 141354190 -14275930 - B2_Mm2 SINE B2 -14 181 2 1 1663 584 161 0 17 chr4 141354208 141354328 -14275792 + CT-rich Low_complexity Low_complexity 2 119 0 1 1663 3481 47 30 7 chr4 141354363 141354789 -14275331 - RLTR10C LTR ERVK 0 436 1 1 1663 7343 40 0 51 chr4 141354790 141355770 -14274350 - MMERVK10C-int LTR ERVK -1 7580 6651 1 1663 18402 45 1 0 chr4 141355761 141358260 -14271860 - MMERVK10C-int LTR ERVK -1771 5810 3512 1 1663 341 89 0 0 chr4 141358263 141358308 -14271812 - MMERVK10C-int LTR ERVK -6405 137 93 1 1663 308 192 0 27 chr4 141358308 141358383 -14271737 + T-rich Low_complexity Low_complexity 2 74 0 1 1663 383 22 0 0 chr4 141358482 141358528 -14271592 - MMERVK10C-int LTR ERVK -7314 267 222 1 1663 243 214 0 0 chr4 141358528 141358570 -14271550 - RLTR27 LTR ERVK -37 272 231 1 1663 1422 61 0 0 chr4 141358570 141358750 -14271370 - MMERVK10C-int LTR ERVK -7401 180 1 1 1663 3016 49 132 0 chr4 141358750 141359135 -14270985 - RLTR10C LTR ERVK 0 436 1 1 1663 288 0 0 0 chr4 141359139 141359171 -14270949 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1663 602 273 87 0 chr4 141359171 141359321 -14270799 - B3 SINE B2 -52 164 2 1 1663 192 184 0 0 chr4 141360291 141360340 -14269780 + T-rich Low_complexity Low_complexity 1 49 0 1 1663 864 154 15 0 chr4 141360356 141360492 -14269628 - B1_Mur4 SINE Alu -9 141 4 1 1663 963 234 25 0 chr4 141360523 141360724 -14269396 - B3 SINE B2 -10 206 1 1 1663 443 250 71 9 chr4 141360887 141361000 -14269120 - PB1D9 SINE Alu 0 120 1 1 1663 286 276 115 0 chr4 141361566 141361653 -14268467 + MIR SINE MIR 94 190 -72 1 1663 1241 109 23 0 chr4 141362295 141362470 -14267650 - B2_Mm2 SINE B2 -16 179 1 1 1663 612 252 93 20 chr4 141362501 141362651 -14267469 + RSINE1 SINE B4 3 163 -2 1 1663 215 302 0 0 chr4 141363468 141363521 -14266599 + B4 SINE B4 86 138 -154 1 1663 432 0 0 0 chr4 141363575 141363623 -14266497 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1663 194 276 31 94 chr4 141363731 141363795 -14266325 - L2 LINE L2 -3253 166 107 1 1663 262 342 102 8 chr4 141363835 141363953 -14266167 - MLT1A1 LTR MaLR -12 396 268 1 1663 315 49 0 0 chr4 141364196 141364237 -14265883 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1 1663 788 171 56 45 chr4 141364262 141364440 -14265680 - B2_Mm2 SINE B2 -14 181 2 1 1663 668 218 0 53 chr4 141364440 141364555 -14265565 + B1_Mur1 SINE Alu 19 132 -17 1 1663 1640 139 25 122 chr4 141364555 141364915 -14265205 - ORR1A4 LTR MaLR 0 329 5 1 1663 668 218 0 53 chr4 141364915 141364930 -14265190 + B1_Mur1 SINE Alu 133 142 -7 1 1663 820 123 41 0 chr4 141364975 141365097 -14265023 + B1_Mus1 SINE Alu 15 141 -7 1 1663 586 179 25 51 chr4 141365704 141365852 -14264268 + B1_Mur2 SINE Alu 26 136 -13 1 1663 372 259 91 86 chr4 141366886 141366969 -14263151 + MT2B LTR ERVL 79 174 -427 1 1663 509 276 79 47 chr4 141366969 141367159 -14262961 + B3A SINE B2 1 196 -2 1 1663 372 259 91 86 chr4 141367159 141367261 -14262859 + MT2B LTR ERVL 175 265 -336 1 1663 904 95 0 16 chr4 141367167 141367295 -14262825 + B1_Mur1 SINE Alu 19 144 -5 1 1663 226 339 23 106 chr4 141367194 141367326 -14262794 + RLTR25A LTR ERVK 522 642 -461 1 1663 760 199 33 7 chr4 141368511 141368663 -14261457 - ID_B1 SINE B4 -3 221 66 1 1663 944 125 14 14 chr4 141369158 141369304 -14260816 + B1_Mur4 SINE Alu 3 148 -2 1 1663 760 234 48 11 chr4 141369871 141370057 -14260063 - MER20 DNA MER1_type 0 219 27 1 1663 393 257 72 18 chr4 141370678 141370798 -14259322 - PB1D10 SINE Alu -11 139 6 1 1663 207 0 0 0 chr4 141371178 141371201 -14258919 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1663 710 180 8 0 chr4 141371207 141371329 -14258791 - B1_Mus2 SINE Alu -12 135 13 1 1663 280 89 0 22 chr4 141371450 141371496 -14258624 - B1F SINE Alu -2 147 103 1 1663 351 228 58 19 chr4 141371528 141371631 -14258489 - PB1D10 SINE Alu -1 116 10 1 1663 261 0 0 0 chr4 141371651 141371680 -14258440 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1663 413 19 0 18 chr4 141372039 141372094 -14258026 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1663 288 175 0 73 chr4 141372707 141372775 -14257345 - RSINE1 SINE B4 -92 73 11 1 1663 705 238 7 0 chr4 141373330 141373481 -14256639 - B4 SINE B4 -123 169 18 1 1663 244 309 14 29 chr4 141374097 141374167 -14255953 - PB1D7 SINE Alu -51 69 1 1 1663 22 0 0 0 chr4 141374190 141374212 -14255908 + AT_rich Low_complexity Low_complexity 1 22 0 1 1663 320 302 11 34 chr4 141374213 141374302 -14255818 - B1F1 SINE Alu -16 101 15 1 1663 214 290 32 0 chr4 141374251 141374313 -14255807 - B4A SINE B4 -142 150 87 1 1663 323 343 86 0 chr4 141375098 141375238 -14254882 + B4A SINE B4 13 164 -128 1 1663 230 240 12 96 chr4 141375393 141375476 -14254644 + MLT1K LTR MaLR 196 271 -324 1 1663 231 36 0 0 chr4 141375789 141375817 -14254303 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1663 870 291 63 8 chr4 141375817 141375841 -14254279 - B4 SINE B4 -22 270 242 1 1663 1156 125 124 10 chr4 141375841 141376043 -14254077 - URR1A DNA MER1_type 0 226 2 1 1663 870 291 63 8 chr4 141376043 141376271 -14253849 - B4 SINE B4 -51 241 4 1 1663 303 232 131 32 chr4 141377020 141377146 -14252974 - MIR SINE MIR -106 162 32 1 1663 333 244 75 43 chr4 141378356 141378450 -14251670 + PB1D10 SINE Alu 5 101 -16 1 1663 346 215 50 108 chr4 141378493 141378613 -14251507 - PB1D7 SINE Alu -7 113 1 1 1663 339 323 169 23 chr4 141378621 141378953 -14251167 + L2b LINE L2 2774 3183 -243 1 1663 993 214 59 38 chr4 141378973 141379211 -14250909 + MTD LTR MaLR 5 247 -172 1 1663 267 296 37 93 chr4 141379290 141379398 -14250722 + RSINE1 SINE B4 48 149 -16 1 1663 740 284 14 29 chr4 141379647 141379854 -14250266 - ID_B1 SINE B4 0 224 21 1 1663 479 228 132 0 chr4 141380252 141380366 -14249754 + B1_Mus2 SINE Alu 2 130 -17 1 1663 210 167 0 0 chr4 141380370 141380406 -14249714 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1663 705 247 35 12 chr4 141380415 141380587 -14249533 - B3 SINE B2 -10 206 31 1 1663 574 132 0 0 chr4 141380618 141380701 -14249419 - B1_Mus2 SINE Alu 0 147 65 1 1663 547 144 29 0 chr4 141380698 141380802 -14249318 - B1F2 SINE Alu -22 127 21 1 1663 353 301 93 22 chr4 141380716 141380855 -14249265 - B4 SINE B4 -94 198 50 1 1663 669 171 39 31 chr4 141380978 141381105 -14249015 + B1_Mur3 SINE Alu 1 128 -21 1 1663 289 301 106 10 chr4 141381674 141381778 -14248342 - B1F1 SINE Alu -35 114 1 1 1663 485 254 18 23 chr4 141382108 141382241 -14247879 + ID_B1 SINE B4 84 213 -11 1 1663 508 150 0 0 chr4 141382399 141382479 -14247641 + B1_Mur3 SINE Alu 68 147 -2 1 1663 279 0 0 0 chr4 141382484 141382515 -14247605 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1663 1268 163 31 194 chr4 141382541 141382891 -14247229 + RLTR40 LTR ERVK 509 801 -16 1 1663 642 213 190 5 chr4 141382914 141383098 -14247022 + ID_B1 SINE B4 5 222 -2 1 1663 522 70 0 0 chr4 141383107 141383178 -14246942 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 1 1663 210 245 44 30 chr4 141383501 141383580 -14246540 + MIRc SINE MIR 69 148 -60 1 1663 226 262 33 0 chr4 141383621 141383682 -14246438 - ID4_ SINE ID -18 65 3 1 1663 344 261 129 9 chr4 141383766 141383882 -14246238 - MER20 DNA MER1_type -73 146 17 1 1663 458 282 0 4 chr4 141384626 141384901 -14245219 + (TG)n Simple_repeat Simple_repeat 1 273 0 1 1663 229 256 17 17 chr4 141384901 141385020 -14245100 + (TATATG)n Simple_repeat Simple_repeat 4 122 0 1 1663 420 309 18 6 chr4 141385033 141385236 -14244884 + (TATATG)n Simple_repeat Simple_repeat 1 205 0 1 1663 533 289 0 11 chr4 141385166 141385341 -14244779 + (TG)n Simple_repeat Simple_repeat 1 173 0 1 1663 717 226 0 0 chr4 141385341 141385518 -14244602 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 1663 1493 54 16 0 chr4 141385676 141385860 -14244260 - B2_Mm2 SINE B2 -8 187 1 1 1663 378 61 0 0 chr4 141386075 141386124 -14243996 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1 1663 341 221 68 23 chr4 141386124 141386212 -14243908 - ID_B1 SINE B4 -7 217 126 1 1663 1529 244 64 62 chr4 141386594 141387113 -14243007 + RMER5 LTR ERV1 15 534 0 1 1663 622 203 22 45 chr4 141387135 141387269 -14242851 + B1_Mur2 SINE Alu 1 131 -18 1 1663 1554 209 75 3 chr4 141387334 141387679 -14242441 + ORR1D2 LTR MaLR 1 370 0 1 1663 742 238 20 40 chr4 141387778 141387979 -14242141 - B4A SINE B4 -76 216 20 1 1663 1129 250 42 38 chr4 141388251 141388589 -14241531 - MTE2a LTR MaLR -51 368 19 1 1663 455 319 48 66 chr4 141388882 141389110 -14241010 - ORR1E LTR MaLR -135 224 1 1 1663 308 291 29 73 chr4 141389110 141389244 -14240876 + MLT2B4 LTR ERVL 86 213 -343 1 1663 396 0 0 0 chr4 141389325 141389369 -14240751 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1663 407 261 33 25 chr4 141389378 141389500 -14240620 - B4A SINE B4 -168 124 2 1 1663 535 182 16 0 chr4 141389607 141389728 -14240392 + CT-rich Low_complexity Low_complexity 4 126 0 1 1663 492 32 0 0 chr4 141389728 141389790 -14240330 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1663 396 322 75 89 chr4 141389951 141390322 -14239798 - MLT1D LTR MaLR -5 500 135 1 1663 402 240 26 88 chr4 141390324 141390438 -14239682 + MTEb LTR MaLR 2 108 -271 1 1663 431 289 78 8 chr4 141390775 141390904 -14239216 - RMER20B LTR ERVK -310 317 180 1 1663 297 288 80 9 chr4 141391097 141391209 -14238911 - MLT1D LTR MaLR -374 131 12 1 1663 865 153 105 12 chr4 141391225 141391397 -14238723 + MTC LTR MaLR 233 420 -1 1 1663 5315 153 115 134 chr4 141391397 141392676 -14237444 + MTC-int LTR MaLR 2 1256 -2 1 1663 373 182 26 0 chr4 141392678 141392755 -14237365 + MTC LTR MaLR 1 79 -342 1 1663 1209 68 0 0 chr4 141392757 141392904 -14237216 + B1_Mus1 SINE Alu 2 148 0 1 1663 285 146 0 0 chr4 141392904 141392952 -14237168 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1663 2058 140 24 3 chr4 141392952 141393288 -14236832 + MTC LTR MaLR 48 390 -31 1 1663 200 248 8 32 chr4 141393917 141394042 -14236078 + (TTAA)n Simple_repeat Simple_repeat 4 125 0 1 1663 392 217 22 17 chr4 141395218 141395396 -14234724 + (TATG)n Simple_repeat Simple_repeat 1 179 0 1 1663 900 226 41 19 chr4 141395399 141395682 -14234438 - B4 SINE B4 -1 291 2 1 1663 259 382 55 15 chr4 141395698 141395749 -14234371 - B3 SINE B2 0 216 7 1 1663 706 271 7 0 chr4 141395749 141395900 -14234220 - RSINE1 SINE B4 -6 159 8 1 1663 409 237 0 0 chr4 141396503 141396579 -14233541 - ID4 SINE ID -3 80 5 1 1663 318 189 78 0 chr4 141396597 141396687 -14233433 - B1F SINE Alu -8 141 45 1 1663 1302 27 0 0 chr4 141396818 141396965 -14233155 - B1_Mus2 SINE Alu 0 147 1 1 1663 348 243 135 0 chr4 141397077 141397188 -14232932 - ID_B1 SINE B4 -1 223 98 1 1663 405 0 0 0 chr4 141397665 141397710 -14232410 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1663 502 279 174 18 chr4 141397712 141397931 -14232189 - B4A SINE B4 -22 270 18 1 1663 875 201 122 0 chr4 141397931 141398099 -14232021 + MTC LTR MaLR 172 364 -57 1 1663 325 164 0 0 chr4 141398099 141398154 -14231966 + B1_Mur4 SINE Alu 2 56 -94 1 1663 255 275 98 11 chr4 141398144 141398236 -14231884 + MTD LTR MaLR 312 411 -8 1 1663 234 128 0 0 chr4 141398242 141398281 -14231839 - B3A SINE B2 -158 40 2 1 1663 216 86 0 0 chr4 141398515 141398550 -14231570 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 1663 412 215 221 47 chr4 141398555 141398682 -14231438 - PB1D9 SINE Alu -1 149 1 1 1663 1255 85 79 0 chr4 141398725 141398902 -14231218 - B2_Mm2 SINE B2 0 195 5 1 1663 578 176 115 25 chr4 141398905 141399027 -14231093 - B1_Mur2 SINE Alu -12 137 5 1 1663 226 73 24 24 chr4 141399052 141399094 -14231026 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1 1663 847 59 51 0 chr4 141399101 141399219 -14230901 - B1_Mus1 SINE Alu -14 134 11 1 1663 188 360 22 0 chr4 141399280 141399369 -14230751 + MIRb SINE MIR 172 262 -6 1 1663 241 316 0 26 chr4 141400310 141400388 -14229732 + CT-rich Low_complexity Low_complexity 3 78 0 1 1663 685 263 28 124 chr4 141400395 141400612 -14229508 - ID_B1 SINE B4 -28 196 1 1 1663 318 0 0 0 chr4 141400768 141400806 -14229314 - U2 snRNA snRNA -150 38 1 1 1663 414 0 0 0 chr4 141401298 141401344 -14228776 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1663 265 169 0 133 chr4 141402527 141402602 -14227518 + RMER16 LTR ERVK 1 65 -468 1 1663 182 37 37 0 chr4 141402627 141402654 -14227466 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 1 1663 1432 84 16 21 chr4 141402654 141402848 -14227272 - B2_Mm2 SINE B2 0 195 3 1 1663 936 177 167 31 chr4 141402863 141403120 -14227000 + RMER16 LTR ERVK 242 533 0 1 1663 980 244 20 0 chr4 141403133 141403334 -14226786 - B3 SINE B2 -11 205 1 1 1663 278 231 51 13 chr4 141403343 141403422 -14226698 - ORSL DNA Tip100 -178 97 16 1 1663 297 0 0 0 chr4 141403738 141403771 -14226349 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1663 1593 361 40 42 chr4 141404102 141405080 -14225040 - RodERV21-int LTR ERV1 -964 4027 3052 1 1663 1512 286 2 10 chr4 141405133 141405536 -14224584 - RodERV21-int LTR ERV1 -3154 1837 1438 1 1663 2109 80 23 53 chr4 141405538 141405880 -14224240 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1663 14731 48 4 6 chr4 141405880 141407735 -14222385 - IAPEz-int LTR ERVK 0 6481 4630 1 1663 1777 98 0 0 chr4 141407702 141407948 -14222172 - IAPEz-int LTR ERVK -5183 2497 2252 1 1663 941 59 0 0 chr4 141407949 141408068 -14222052 - IAPEz-int LTR ERVK -5004 1477 1359 1 1663 3293 76 4 37 chr4 141408068 141408826 -14221294 - IAPEz-int LTR ERVK -5819 662 6 1 1663 2154 96 25 9 chr4 141408826 141409153 -14220967 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1663 731 297 108 85 chr4 141409154 141409874 -14220246 - RodERV21-int LTR ERV1 -3549 1442 706 1 1663 212 264 0 36 chr4 141410653 141410708 -14219412 + G-rich Low_complexity Low_complexity 4 56 0 1 1663 545 171 117 0 chr4 141411452 141411563 -14218557 + B1_Mur1 SINE Alu 9 132 -17 1 1663 1507 83 5 0 chr4 141411570 141411763 -14218357 - B2_Mm2 SINE B2 0 195 2 1 1663 190 0 67 0 chr4 141411913 141411943 -14218177 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1663 1104 56 28 14 chr4 141411957 141412102 -14218018 + B1_Mus2 SINE Alu 1 147 0 1 1663 195 69 0 0 chr4 141412102 141412131 -14217989 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1663 367 220 31 52 chr4 141412183 141412279 -14217841 - RSINE1 SINE B4 0 165 72 1 1663 239 308 33 11 chr4 141412277 141412369 -14217751 - PB1D9 SINE Alu -26 94 1 1 1663 1062 139 14 78 chr4 141412656 141412875 -14217245 + URR1A DNA MER1_type 22 226 0 1 1663 524 276 98 70 chr4 141412982 141413302 -14216818 + RLTR18 LTR ERVK 190 615 -1 1 1663 311 314 0 64 chr4 141413773 141413882 -14216238 - PB1D10 SINE Alu -4 113 12 1 1663 241 276 50 30 chr4 141414000 141414101 -14216019 + MIR SINE MIR 117 219 -43 1 1663 552 281 77 6 chr4 141415981 141416149 -14213971 + ID_B1 SINE B4 7 186 -38 1 1663 221 98 24 0 chr4 141416158 141416199 -14213921 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1663 225 0 0 0 chr4 141416225 141416250 -14213870 + (GGGAGA)n Simple_repeat Simple_repeat 2 26 0 1 1663 1462 95 0 5 chr4 141417145 141417335 -14212785 - B2_Mm2 SINE B2 -5 190 2 1 1663 486 0 0 0 chr4 141418326 141418380 -14211740 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1663 495 252 43 0 chr4 141418463 141418602 -14211518 - B1F SINE Alu 0 149 5 1 1663 687 12 0 0 chr4 141418723 141418803 -14211317 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1663 356 254 25 42 chr4 141419455 141419574 -14210546 - MIRb SINE MIR -109 159 43 1 1663 625 251 43 58 chr4 141420305 141420499 -14209621 - MTE2a LTR MaLR -1 378 188 1 1663 1224 267 68 45 chr4 141420499 141420754 -14209366 + MTD LTR MaLR 1 276 -143 1 1663 1226 55 0 0 chr4 141420754 141420900 -14209220 - B1_Mus2 SINE Alu 0 147 2 1 1663 1224 267 68 45 chr4 141420900 141421040 -14209080 + MTD LTR MaLR 277 405 -14 1 1663 447 280 43 21 chr4 141421057 141421229 -14208891 - MTE2a LTR MaLR -220 199 21 1 1663 341 301 136 26 chr4 141421983 141422174 -14207946 + MT2B2 LTR ERVL 46 257 -327 1 1663 786 38 19 0 chr4 141422104 141422209 -14207911 + B1_Mus2 SINE Alu 33 139 -8 1 1663 198 257 64 9 chr4 141423233 141423334 -14206786 - MIRc SINE MIR -53 155 60 1 1663 234 267 0 0 chr4 141423484 141423529 -14206591 - L3 LINE CR1 -117 4372 4328 1 1663 251 232 0 35 chr4 141424568 141424617 -14205503 - ID4_ SINE ID 0 83 37 1 1663 379 250 0 129 chr4 141424617 141424689 -14205431 - B1F SINE Alu -19 130 68 1 1663 1492 64 37 0 chr4 141424689 141424876 -14205244 - B2_Mm2 SINE B2 0 195 2 1 1663 379 250 0 129 chr4 141424876 141424950 -14205170 - B1F SINE Alu -82 67 3 1 1663 587 203 93 0 chr4 141425214 141425332 -14204788 + B3 SINE B2 2 130 -86 1 207 455 318 28 22 chr4 141426574 141426754 -14203366 - Charlie19a DNA Charlie -100 286 106 1 1664 306 297 27 11 chr4 141427527 141427639 -14202481 + MIR3 SINE MIR 87 201 -75 1 1664 260 351 90 15 chr4 141428615 141428748 -14201372 + MIRb SINE MIR 23 165 -103 1 1664 324 0 0 0 chr4 141429852 141429888 -14200232 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1664 189 0 0 0 chr4 141430669 141430690 -14199430 + (CCG)n Simple_repeat Simple_repeat 2 22 0 1 1664 526 242 32 132 chr4 141431683 141431902 -14198218 + B3A SINE B2 2 198 0 1 1664 310 133 167 0 chr4 141431913 141431973 -14198147 + B1_Mur2 SINE Alu 62 131 -18 1 1664 1127 29 50 7 chr4 141432047 141432188 -14197932 - B1_Mus1 SINE Alu 0 148 2 1 1664 613 301 59 5 chr4 141433338 141433542 -14196578 - ID_B1 SINE B4 -5 219 5 1 1664 412 258 83 0 chr4 141433555 141433675 -14196445 - B1F SINE Alu -1 148 19 1 1664 226 273 67 83 chr4 141433589 141433709 -14196411 - MT2B LTR ERVL -340 261 144 1 1664 331 38 0 36 chr4 141434066 141434121 -14195999 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 1664 283 23 22 22 chr4 141434249 141434294 -14195826 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 1664 515 301 8 8 chr4 141434294 141434428 -14195692 - B1F SINE Alu -13 136 3 1 1664 387 0 0 0 chr4 141434458 141434501 -14195619 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1664 252 0 0 0 chr4 141434501 141434528 -14195592 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1664 468 292 464 0 chr4 141434528 141434726 -14195394 - B4 SINE B4 -1 291 2 1 1664 678 233 17 106 chr4 141435385 141435488 -14194632 + ID_B1 SINE B4 4 217 -7 1 1664 897 129 0 0 chr4 141435488 141435620 -14194500 + B1_Mus1 SINE Alu 10 141 -7 1 1664 303 264 103 114 chr4 141435620 141435804 -14194316 + B4A SINE B4 111 292 0 1 1664 397 211 0 0 chr4 141436343 141436414 -14193706 + ID4 SINE ID 2 72 -11 1 1664 399 220 0 0 chr4 141436454 141436545 -14193575 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1664 271 253 59 71 chr4 141436552 141436632 -14193488 + MTD LTR MaLR 1 79 -342 1 1664 1765 197 92 45 chr4 141436632 141437057 -14193063 + RMER5 LTR ERV1 1 445 -89 1 1664 661 153 0 26 chr4 141437059 141437173 -14192947 + B1_Mus2 SINE Alu 37 147 0 1 1664 182 37 0 36 chr4 141437199 141437227 -14192893 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1664 288 247 113 0 chr4 141437245 141437342 -14192778 + MTD LTR MaLR 247 354 -65 1 1664 521 262 28 14 chr4 141437380 141437523 -14192597 - RSINE1 SINE B4 -19 146 2 1 1664 421 297 8 8 chr4 141439127 141439246 -14190874 - B1F SINE Alu -19 130 12 1 1664 759 295 55 40 chr4 141439342 141439614 -14190506 + B4A SINE B4 1 276 -16 1 1664 217 272 81 58 chr4 141439857 141439943 -14190177 + MIRb SINE MIR 26 113 -155 1 1664 1245 41 7 0 chr4 141440061 141440207 -14189913 + B1_Mus2 SINE Alu 1 147 0 1 1664 207 0 0 0 chr4 141440217 141440240 -14189880 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1664 1072 144 84 16 chr4 141440436 141440627 -14189493 + B3 SINE B2 2 205 -11 1 1664 366 80 0 0 chr4 141440973 141441023 -14189097 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1664 907 137 6 6 chr4 141441018 141441180 -14188940 + (GGGGA)n Simple_repeat Simple_repeat 4 165 0 1 1664 522 129 0 0 chr4 141441746 141441831 -14188289 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1664 195 129 0 0 chr4 141441976 141442007 -14188113 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1664 865 261 120 34 chr4 141442021 141442287 -14187833 - B4 SINE B4 0 292 4 1 1664 289 288 121 58 chr4 141442797 141442970 -14187150 + MLT1H LTR MaLR 362 545 -4 1 1664 763 76 17 17 chr4 141443265 141443385 -14186735 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 1 1664 225 0 0 0 chr4 141443385 141443409 -14186711 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1664 657 124 0 0 chr4 141443442 141443571 -14186549 + (TC)n Simple_repeat Simple_repeat 2 130 0 1 1664 477 0 0 0 chr4 141443571 141443624 -14186496 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1664 271 183 14 27 chr4 141443885 141443958 -14186162 + C-rich Low_complexity Low_complexity 3 74 0 1 1664 366 247 0 0 chr4 141443958 141444031 -14186089 - ID4_ SINE ID -3 80 8 1 1664 428 243 139 28 chr4 141444084 141444228 -14185892 - B4A SINE B4 -132 160 1 1 1664 433 182 102 0 chr4 141444232 141444320 -14185800 - ID_B1 SINE B4 -7 217 121 1 1664 262 292 38 98 chr4 141444320 141444365 -14185755 - B1F SINE Alu -7 142 18 1 1664 637 153 104 8 chr4 141444443 141444568 -14185552 + B1_Mus1 SINE Alu 6 142 -6 1 1664 842 100 52 9 chr4 141444569 141444780 -14185340 + CT-rich Low_complexity Low_complexity 1 219 0 1 1664 552 96 128 0 chr4 141444825 141444981 -14185139 + CT-rich Low_complexity Low_complexity 5 180 0 1 1664 554 247 55 0 chr4 141445016 141445162 -14184958 - B3 SINE B2 -36 162 1 1 1664 924 254 33 146 chr4 141445309 141445733 -14184387 + MTE2a LTR MaLR 4 379 0 1 1664 869 184 7 0 chr4 141445982 141446129 -14183991 + B1_Mur3 SINE Alu 1 148 -1 1 1664 298 294 27 0 chr4 141446178 141446267 -14183853 + MIRc SINE MIR 54 154 -114 1 1664 558 219 55 74 chr4 141446963 141447165 -14182955 - B3A SINE B2 0 198 1 1 1664 230 279 0 14 chr4 141447683 141447752 -14182368 + (CGTG)n Simple_repeat Simple_repeat 2 69 0 1 1664 365 262 54 54 chr4 141448154 141448283 -14181837 - RSINE1 SINE B4 0 165 37 1 1664 904 265 39 0 chr4 141448418 141448622 -14181498 - B3 SINE B2 -4 212 1 1 1664 446 297 12 88 chr4 141448638 141448839 -14181281 - ID_B1 SINE B4 -69 223 50 1 1664 302 273 16 65 chr4 141449713 141449897 -14180223 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 1 1664 189 0 0 0 chr4 141449906 141449927 -14180193 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1664 288 0 0 0 chr4 141449927 141449958 -14180162 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1664 321 292 31 94 chr4 141450877 141450932 -14179188 + MT2B LTR ERVL 122 166 -435 1 1664 574 211 109 0 chr4 141450932 141451060 -14179060 + B1_Mur1 SINE Alu 3 144 -5 1 1664 386 250 90 8 chr4 141453387 141453520 -14176600 - MER53 DNA hAT -2 191 48 1 1664 447 68 0 0 chr4 141453722 141453781 -14176339 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 1 1664 388 269 68 88 chr4 141453945 141454092 -14176028 + B3 SINE B2 2 145 -71 1 1664 432 0 0 0 chr4 141454092 141454140 -14175980 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1664 257 269 0 0 chr4 141454161 141454228 -14175892 - ID2 SINE ID -10 73 7 1 1664 582 245 33 33 chr4 141455453 141455605 -14174515 - RSINE1 SINE B4 -11 154 3 1 1664 411 259 9 18 chr4 141457264 141457374 -14172746 - PB1D9 SINE Alu -5 115 7 1 1664 378 0 0 0 chr4 141458445 141458487 -14171633 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1664 195 316 12 37 chr4 141458696 141458778 -14171342 + MIR SINE MIR 23 102 -106 1 1664 645 272 98 0 chr4 141458804 141458988 -14171132 - ID_B1 SINE B4 -21 203 2 1 1664 889 238 0 0 chr4 141459205 141459369 -14170751 + RSINE1 SINE B4 2 165 0 1 1664 239 0 0 31 chr4 141459565 141459597 -14170523 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 1664 863 163 0 22 chr4 141459597 141459735 -14170385 - B1_Mur1 SINE Alu -14 135 1 1 1664 219 36 0 0 chr4 141460209 141460237 -14169883 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1664 315 212 80 34 chr4 141460245 141460333 -14169787 - B4 SINE B4 0 292 201 1 1664 1013 194 53 10 chr4 141460491 141460699 -14169421 - ID_B1 SINE B4 0 224 8 1 1664 449 310 139 12 chr4 141461892 141462065 -14168055 - B4 SINE B4 -6 286 92 1 1664 741 173 8 8 chr4 141462098 141462232 -14167888 - B1_Mur2 SINE Alu 0 149 16 1 1664 536 288 32 138 chr4 141462105 141462351 -14167769 - B4 SINE B4 -72 220 1 1 1664 225 0 0 0 chr4 141462469 141462494 -14167626 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1 1664 373 271 39 8 chr4 141462946 141463076 -14167044 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1664 925 227 61 39 chr4 141463147 141463376 -14166744 - B4A SINE B4 -57 235 2 1 1664 421 315 78 24 chr4 141463470 141463675 -14166445 + MIRb SINE MIR 34 249 -19 1 1664 448 272 24 22 chr4 141464333 141464492 -14165628 - ID_B1 SINE B4 -17 207 54 1 1664 339 158 0 0 chr4 141465133 141465198 -14164922 - MIR SINE MIR -131 137 73 1 1664 240 342 80 12 chr4 141465405 141465568 -14164552 + Charlie18a DNA MER1_type 40 213 -129 1 1664 270 0 0 0 chr4 141465917 141465947 -14164173 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1664 865 143 0 48 chr4 141466105 141466252 -14163868 - B1_Mm SINE Alu -7 140 1 1 1664 648 240 7 0 chr4 141466320 141466470 -14163650 - B3A SINE B2 -47 151 1 1 1664 326 286 13 0 chr4 141466736 141466813 -14163307 + MER3 DNA MER1_type 8 85 -124 1 1664 895 228 56 0 chr4 141466940 141467120 -14163000 + ID_B1 SINE B4 24 213 -11 1 1664 357 364 88 15 chr4 141467147 141467409 -14162711 - L2a LINE L2 0 3426 3146 1 1664 691 265 14 114 chr4 141467610 141467884 -14162236 - ID_B1 SINE B4 -39 253 1 1 1664 1244 215 58 142 chr4 141468429 141468517 -14161603 + MTD LTR MaLR 13 98 -321 1 1664 1222 61 0 0 chr4 141468517 141468664 -14161456 + B1_Mus1 SINE Alu 2 148 0 1 1664 1244 215 58 142 chr4 141468664 141468727 -14161393 + MTD LTR MaLR 99 130 -289 1 1664 1245 48 0 0 chr4 141468727 141468872 -14161248 - B1_Mus2 SINE Alu 0 147 3 1 1664 375 23 0 0 chr4 141468873 141468917 -14161203 + (TTA)n Simple_repeat Simple_repeat 1 44 0 1 1664 1244 215 58 142 chr4 141468917 141469190 -14160930 + MTD LTR MaLR 131 404 -15 1 1664 212 244 38 25 chr4 141469261 141469341 -14160779 + L2a LINE L2 3262 3342 -84 1 1664 198 200 0 0 chr4 141469938 141469973 -14160147 + MIRb SINE MIR 216 250 -18 1 1664 1987 142 87 12 chr4 141470692 141471026 -14159094 + RLTR15 LTR ERVK 1 359 0 1 1664 284 238 340 64 chr4 141471155 141471380 -14158740 + B4 SINE B4 2 288 -4 1 1664 295 321 137 0 chr4 141471508 141471639 -14158481 - MIRb SINE MIR -84 184 36 1 1664 989 245 9 14 chr4 141472772 141472991 -14157129 - ID_B1 SINE B4 -3 221 4 1 1664 299 331 7 80 chr4 141473095 141473233 -14156887 + LTR16C LTR ERVL 361 488 -1 1 1664 216 198 0 0 chr4 141473276 141473333 -14156787 - MIRc SINE MIR -105 157 102 1 1664 292 209 0 21 chr4 141473344 141473437 -14156683 + CT-rich Low_complexity Low_complexity 3 93 0 1 1664 1228 61 0 0 chr4 141473502 141473649 -14156471 - B1_Mus2 SINE Alu 0 147 1 1 1664 203 0 37 0 chr4 141475237 141475264 -14154856 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 1 1664 239 292 14 14 chr4 141475693 141475766 -14154354 - L2a LINE L2 0 3426 3354 1 1664 248 304 164 6 chr4 141476014 141476173 -14153947 + MER20 DNA MER1_type 29 212 -7 1 1664 235 354 60 67 chr4 141476969 141477193 -14152927 + L2b LINE L2 3024 3243 -132 1 1664 201 39 0 0 chr4 141477193 141477219 -14152901 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1 1664 235 342 88 26 chr4 141477219 141477324 -14152796 + L2b LINE L2 3244 3383 -4 1 1664 1173 184 34 0 chr4 141477336 141477542 -14152578 + B3 SINE B2 4 216 0 1 1664 730 172 157 17 chr4 141477609 141477781 -14152339 - B4 SINE B4 0 292 97 1 1664 418 189 8 8 chr4 141477994 141478090 -14152030 - MTC LTR MaLR -300 96 1 1 1664 401 379 62 0 chr4 141478462 141478673 -14151447 - L3 LINE CR1 -171 4318 4095 1 1664 480 62 0 0 chr4 141478934 141478998 -14151122 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1664 674 218 43 60 chr4 141479086 141479271 -14150849 - B3A SINE B2 -16 182 1 1 1664 294 253 0 24 chr4 141479282 141479367 -14150753 - ID4_ SINE ID 0 83 1 1 1664 186 43 0 0 chr4 141479587 141479610 -14150510 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1664 926 94 0 0 chr4 141479610 141479737 -14150383 - B1_Mur4 SINE Alu -2 148 22 1 1664 210 37 0 0 chr4 141479738 141479765 -14150355 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1664 373 189 68 0 chr4 141479769 141479843 -14150277 - PB1D10 SINE Alu -14 103 25 1 1664 984 123 20 40 chr4 141480763 141480915 -14149205 - B1_Mur3 SINE Alu 0 149 1 1 1664 920 240 9 9 chr4 141481010 141481220 -14148900 - ID_B1 SINE B4 0 224 15 1 1664 268 250 0 0 chr4 141481164 141481228 -14148892 - BC1_Mm scRNA scRNA -82 70 7 1 1664 941 141 206 11 chr4 141481326 141481506 -14148614 + B3 SINE B2 1 215 -1 1 1664 23 33 0 0 chr4 141481507 141481537 -14148583 + AT_rich Low_complexity Low_complexity 1 30 0 1 1664 478 232 47 47 chr4 141481546 141481695 -14148425 + B1F SINE Alu 1 149 0 1 1664 198 0 0 0 chr4 141481696 141481718 -14148402 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1664 278 260 27 0 chr4 141481726 141481799 -14148321 + ID4 SINE ID 9 83 0 1 1664 299 313 120 39 chr4 141481831 141482090 -14148030 - L1M2 LINE L1 -832 5311 5032 1 1664 305 304 29 19 chr4 141482401 141482505 -14147615 - PB1 SINE Alu -2 125 21 1 1664 1222 188 5 0 chr4 141482637 141482845 -14147275 - B3 SINE B2 -6 210 2 1 1664 351 0 0 0 chr4 141482937 141482976 -14147144 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 1 1664 1110 108 0 0 chr4 141482976 141483133 -14146987 - B2_Mm2 SINE B2 -37 158 2 1 1664 22 35 0 0 chr4 141483680 141483709 -14146411 + AT_rich Low_complexity Low_complexity 1 29 0 1 1664 540 126 0 0 chr4 141483763 141483850 -14146270 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1664 1187 106 49 237 chr4 141484485 141484831 -14145289 + ORR1C2 LTR MaLR 104 384 0 1 1664 476 269 15 8 chr4 141486301 141486432 -14143688 + ID_B1 SINE B4 93 224 0 1 1664 209 122 24 0 chr4 141486432 141486473 -14143647 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1664 279 223 0 17 chr4 141486586 141486654 -14143466 - B1_Mur1 SINE Alu -6 114 53 1 1664 874 144 9 40 chr4 141486760 141487234 -14142886 + (CA)n Simple_repeat Simple_repeat 1 458 0 1 1664 1463 74 5 5 chr4 141489545 141489736 -14140384 - B2_Mm1a SINE B2 -2 191 1 1 1664 440 307 69 64 chr4 141489873 141490075 -14140045 + MER58A DNA MER1_type 17 219 -5 1 1664 491 285 145 28 chr4 141490370 141490619 -14139501 + B4A SINE B4 1 278 -14 1 1664 642 264 27 20 chr4 141490732 141490879 -14139241 + B4 SINE B4 76 223 -69 1 1664 700 239 35 7 chr4 141490886 141491029 -14139091 + RSINE1 SINE B4 3 149 -16 1 1664 192 77 0 0 chr4 141491029 141491055 -14139065 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1664 444 313 57 74 chr4 141491600 141491883 -14138237 + ORR1E LTR MaLR 29 306 -53 1 1664 450 0 0 0 chr4 141491990 141492040 -14138080 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1664 1593 38 27 0 chr4 141492728 141492914 -14137206 + B2_Mm2 SINE B2 1 191 -4 1 1664 2314 144 98 22 chr4 141493010 141493500 -14136620 + RLTR11A2 LTR ERVK 1 527 0 1 1664 206 116 23 0 chr4 141493636 141493679 -14136441 + (TTCTCC)n Simple_repeat Simple_repeat 2 45 0 1 1664 492 218 6 28 chr4 141493775 141493954 -14136166 + CT-rich Low_complexity Low_complexity 2 176 0 1 1664 376 338 29 7 chr4 141493958 141494098 -14136022 - Lx8 LINE L1 -250 7223 7081 1 1664 1107 184 14 28 chr4 141494561 141494774 -14135346 - B3 SINE B2 0 216 7 1 1664 186 303 15 0 chr4 141495336 141495402 -14134718 + MIRb SINE MIR 193 259 -9 1 1664 229 305 51 28 chr4 141495405 141495524 -14134596 + MIRc SINE MIR 35 157 -51 1 1664 456 247 110 52 chr4 141495560 141495714 -14134406 - RSINE1 SINE B4 0 165 3 1 1664 273 196 0 0 chr4 141496103 141496159 -14133961 + CT-rich Low_complexity Low_complexity 2 57 0 1 1664 207 100 0 0 chr4 141496204 141496234 -14133886 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 1 1664 1226 54 0 0 chr4 141496234 141496381 -14133739 - B1_Mus2 SINE Alu 0 147 1 1 1664 462 236 0 0 chr4 141496381 141496470 -14133650 - PB1D10 SINE Alu -28 89 1 1 1664 231 281 98 73 chr4 141496470 141496510 -14133610 - MT2B2 LTR ERVL -426 158 116 1 1664 266 371 74 40 chr4 141496847 141497049 -14133071 + MLT1D LTR MaLR 8 216 -289 1 1664 414 0 0 0 chr4 141497074 141497120 -14133000 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1664 751 200 0 14 chr4 141497124 141497266 -14132854 - B1_Mus1 SINE Alu -8 140 1 1 1664 797 208 71 22 chr4 141497281 141497463 -14132657 - B3 SINE B2 -5 211 21 1 1664 373 238 175 0 chr4 141497536 141497662 -14132458 + B1F1 SINE Alu 2 149 0 1 1664 662 134 27 0 chr4 141497665 141497777 -14132343 + B1_Mur4 SINE Alu 1 115 -35 1 1664 196 176 0 50 chr4 141497798 141497858 -14132262 + CT-rich Low_complexity Low_complexity 5 61 0 1 1664 385 151 11 11 chr4 141497891 141497978 -14132142 + GA-rich Low_complexity Low_complexity 3 89 0 1 1664 273 195 141 35 chr4 141497980 141498065 -14132055 + BC1_Mm scRNA scRNA 6 99 -53 1 1664 1129 134 105 34 chr4 141498787 141498996 -14131124 - URR1A DNA MER1_type -2 224 1 1 1664 3909 127 8 5 chr4 141499035 141499636 -14130484 + RMER13A LTR ERVK 1 603 -257 1 1664 2348 132 18 18 chr4 141500084 141500471 -14129649 + ORR1B1 LTR MaLR 2 388 -6 1 1664 930 221 77 5 chr4 141500631 141500840 -14129280 + ID_B1 SINE B4 1 224 0 2 1664 21 36 0 0 chr4 141500959 141500987 -14129133 + AT_rich Low_complexity Low_complexity 1 28 0 3 1664 366 145 27 55 chr4 141501039 141501112 -14129008 - PB1D9 SINE Alu 0 120 50 4 1664 257 286 14 0 chr4 141501121 141501191 -14128929 + CT-rich Low_complexity Low_complexity 2 72 0 5 1664 253 262 0 97 chr4 141502245 141502338 -14127782 - MIRc SINE MIR -89 179 96 6 1664 247 262 176 24 chr4 141502569 141502694 -14127426 + MLT1A1 LTR MaLR 244 387 -21 7 1664 180 206 0 29 chr4 141503113 141503148 -14126972 + MIRb SINE MIR 206 239 -29 8 1664 1741 225 173 16 chr4 141503448 141503892 -14126228 + RLTR26 LTR ERVK 1 522 -120 9 1664 335 60 20 0 chr4 141503892 141503942 -14126178 + (CAG)n Simple_repeat Simple_repeat 2 52 0 1 1664 1741 225 173 16 chr4 141503942 141504052 -14126068 + RLTR26 LTR ERVK 523 642 0 9 1664 235 169 39 0 chr4 141504075 141504124 -14125996 + (CACCAT)n Simple_repeat Simple_repeat 3 51 0 1 1664 1698 138 33 235 chr4 141504124 141504605 -14125515 - ORR1C2 LTR MaLR 0 384 1 1 1664 235 169 39 0 chr4 141504605 141504632 -14125488 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 1 1664 528 200 0 0 chr4 141504651 141504831 -14125289 + (CCA)n Simple_repeat Simple_repeat 1 180 0 1 1664 212 167 0 20 chr4 141504862 141504911 -14125209 + (CCA)n Simple_repeat Simple_repeat 1 48 0 1 1664 369 102 0 0 chr4 141506054 141506113 -14124007 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 1 1664 458 285 34 23 chr4 141506140 141506316 -14123804 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1 1664 237 293 27 54 chr4 141506255 141506439 -14123681 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1664 285 382 0 0 chr4 141506408 141506531 -14123589 + CT-rich Low_complexity Low_complexity 1 123 0 1 1664 341 241 53 114 chr4 141506791 141506922 -14123198 - MT2B LTR ERVL -322 279 157 1 1664 669 141 10 0 chr4 141506817 141506916 -14123204 - B1_Mur2 SINE Alu -49 100 1 2 1664 417 287 43 9 chr4 141506916 141506933 -14123187 - B4 SINE B4 -103 189 70 2 1664 1217 209 0 5 chr4 141506954 141507165 -14122955 - B3 SINE B2 -6 210 1 2 1664 269 263 163 31 chr4 141507205 141507303 -14122817 - RSINE1 SINE B4 -54 111 1 2 1664 414 0 0 0 chr4 141507800 141507846 -14122274 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1664 631 229 174 14 chr4 141507851 141508064 -14122056 - B4A SINE B4 -44 248 2 2 1664 228 67 0 0 chr4 141508120 141508150 -14121970 + (CCG)n Simple_repeat Simple_repeat 2 31 0 2 1664 390 301 76 13 chr4 141508442 141508600 -14121520 - HAL1-3A_ME LINE L1 -715 2143 1976 2 1664 752 233 199 4 chr4 141508624 141508865 -14121255 - B4 SINE B4 -1 291 4 2 1664 645 289 40 23 chr4 141508925 141509102 -14121018 - MER2 DNA MER2_type 0 345 166 2 1664 517 267 146 19 chr4 141509260 141509488 -14120632 - ID_B1 SINE B4 -15 277 39 3 1664 703 294 27 115 chr4 141509499 141509760 -14120360 - B4A SINE B4 -50 242 5 3 1664 180 111 0 0 chr4 141510406 141510433 -14119687 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1664 1256 246 10 46 chr4 141510474 141510777 -14119343 - B4 SINE B4 0 292 1 3 1664 243 197 16 16 chr4 141514757 141514819 -14115301 + (CCCCAG)n Simple_repeat Simple_repeat 2 63 0 3 1664 258 149 0 41 chr4 141515234 141515283 -14114837 + MER3 DNA MER1_type 153 199 -10 3 1664 396 0 0 0 chr4 141515866 141515910 -14114210 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1664 453 103 0 0 chr4 141515910 141515977 -14114143 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1664 510 165 82 9 chr4 141516338 141516448 -14113672 + PB1D9 SINE Alu 2 119 -1 3 1664 1528 72 0 0 chr4 141516451 141516644 -14113476 + B2_Mm1a SINE B2 1 193 0 3 1664 213 213 0 21 chr4 141516795 141516843 -14113277 + PB1D9 SINE Alu 1 47 -73 4 1664 989 215 10 10 chr4 141516824 141517017 -14113103 + B3 SINE B2 17 209 -7 4 1664 521 261 78 0 chr4 141517033 141517175 -14112945 - MTE2a LTR MaLR -33 346 194 4 1664 702 272 27 16 chr4 141517258 141517441 -14112679 - B3A SINE B2 -13 185 1 4 1664 559 241 37 101 chr4 141517442 141517631 -14112489 - MTE2a LTR MaLR -199 180 4 4 1664 834 320 34 16 chr4 141517638 141518016 -14112104 + L1M5 LINE L1 2628 3012 -3134 4 1664 1159 91 55 38 chr4 141518259 141518292 -14111828 - B2_Mm2 SINE B2 -9 186 160 4 1664 261 0 0 0 chr4 141518292 141518321 -14111799 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1664 1159 91 55 38 chr4 141518321 141518470 -14111650 - B2_Mm2 SINE B2 -36 159 1 4 1664 366 23 0 0 chr4 141518487 141518530 -14111590 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1664 557 256 19 122 chr4 141518530 141518735 -14111385 - Lx8 LINE L1 -156 7317 7134 4 1664 225 0 0 0 chr4 141518753 141518778 -14111342 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1664 834 234 66 19 chr4 141518778 141518991 -14111129 - B4A SINE B4 -68 224 2 5 1664 207 0 0 0 chr4 141519435 141519458 -14110662 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1664 485 215 68 15 chr4 141519716 141519848 -14110272 + B4A SINE B4 2 140 -152 5 1664 543 259 78 39 chr4 141520147 141520300 -14109820 + B3A SINE B2 1 159 -57 5 1664 780 49 63 0 chr4 141520779 141520922 -14109198 + (TC)n Simple_repeat Simple_repeat 1 152 0 5 1664 320 281 86 19 chr4 141521136 141521241 -14108879 + MTE2a LTR MaLR 1 112 -307 5 1664 38801 23 2 6 chr4 141521268 141527501 -14102619 - L1Md_T LINE L1 0 6582 383 5 1664 669 269 114 18 chr4 141527502 141527756 -14102364 + MTE2a LTR MaLR 80 407 -14 5 1664 1172 182 28 14 chr4 141527847 141528064 -14102056 + ORR1E LTR MaLR 1 220 -139 5 1664 495 187 55 0 chr4 141528117 141528208 -14101912 - PB1D10 SINE Alu -5 112 17 5 1664 899 206 20 45 chr4 141528314 141528512 -14101608 + B3A SINE B2 6 198 0 5 1664 910 243 22 36 chr4 141529108 141529330 -14100790 - B4A SINE B4 -72 220 2 6 1664 284 294 47 0 chr4 141530066 141530151 -14099969 + MER117 DNA MER1_type 72 160 -37 6 1664 251 130 71 36 chr4 141530664 141530720 -14099400 - RMER30 DNA MER1_type -46 156 99 6 1664 514 227 0 10 chr4 141530773 141530871 -14099249 - RSINE1 SINE B4 -43 122 26 6 1664 180 152 0 0 chr4 141530889 141530922 -14099198 + (CACCAT)n Simple_repeat Simple_repeat 6 38 0 6 1664 240 288 12 99 chr4 141530927 141531008 -14099112 - RMER30 DNA MER1_type -127 75 2 6 1664 979 260 19 122 chr4 141531203 141531445 -14098675 + B4A SINE B4 14 244 -48 6 1664 607 195 97 0 chr4 141531445 141531558 -14098562 + B1_Mus2 SINE Alu 5 128 -19 6 1664 979 260 19 122 chr4 141531558 141531626 -14098494 + B4A SINE B4 245 292 0 6 1664 243 0 0 0 chr4 141531649 141531676 -14098444 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1664 274 140 51 34 chr4 141531724 141531783 -14098337 - B1_Mus1 SINE Alu -83 65 6 6 1664 320 288 44 18 chr4 141531794 141531907 -14098213 + MIR SINE MIR 116 231 -31 6 1664 438 65 0 0 chr4 141532115 141532177 -14097943 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1664 293 214 78 53 chr4 141532277 141532401 -14097719 + Lx7 LINE L1 5749 5909 -1787 7 1664 1252 48 0 0 chr4 141532919 141533066 -14097054 - B1_Mus1 SINE Alu 0 148 2 7 1664 22 0 0 0 chr4 141533217 141533239 -14096881 + AT_rich Low_complexity Low_complexity 1 22 0 7 1664 255 140 0 0 chr4 141533257 141533307 -14096813 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1664 23 33 0 0 chr4 141533687 141533717 -14096403 + AT_rich Low_complexity Low_complexity 1 30 0 7 1664 792 167 5 0 chr4 141533720 141533945 -14096175 + (TG)n Simple_repeat Simple_repeat 1 226 0 7 1664 956 186 77 19 chr4 141534047 141534255 -14095865 + B4A SINE B4 1 220 -72 7 1664 860 223 60 97 chr4 141534930 141535178 -14094942 - MTE2b LTR MaLR -21 358 120 7 1664 395 169 181 0 chr4 141535217 141535300 -14094820 - MTE2b LTR MaLR -217 162 65 7 1664 192 125 0 0 chr4 141535339 141535371 -14094749 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1664 611 146 31 0 chr4 141535574 141535704 -14094416 + CT-rich Low_complexity Low_complexity 1 134 0 8 1664 891 121 83 0 chr4 141535704 141535836 -14094284 - B1_Mur4 SINE Alu -5 145 3 8 1664 1577 164 50 3 chr4 141535837 141536119 -14094001 - MTD LTR MaLR -3 416 122 8 1664 490 314 40 97 chr4 141536165 141536391 -14093729 - B4 SINE B4 0 292 80 8 1664 969 184 0 0 chr4 141536612 141537123 -14092997 + (CA)n Simple_repeat Simple_repeat 1 511 0 8 1664 852 174 3 0 chr4 141537147 141537451 -14092669 + (CA)n Simple_repeat Simple_repeat 1 305 0 8 1664 364 309 46 67 chr4 141537526 141537720 -14092400 - B4 SINE B4 -101 191 2 8 1664 268 268 0 0 chr4 141539212 141539268 -14090852 - L2b LINE L2 -5 3370 3315 8 1664 266 349 34 51 chr4 141539545 141539685 -14090435 + MLT1K LTR MaLR 352 492 -103 8 1664 1023 123 140 6 chr4 141539685 141539856 -14090264 - B2_Mm2 SINE B2 -1 194 1 8 1664 266 349 34 51 chr4 141539856 141539890 -14090230 + MLT1K LTR MaLR 493 523 -72 8 1664 1057 189 16 5 chr4 141540618 141540810 -14089310 - ID_B1 SINE B4 -18 206 13 8 1664 515 314 97 0 chr4 141541063 141541248 -14088872 + MIRb SINE MIR 50 252 -16 9 1664 600 236 7 97 chr4 141541608 141541763 -14088357 - B1F SINE Alu -8 141 1 9 1664 291 157 0 0 chr4 141541790 141541841 -14088279 + (CAT)n Simple_repeat Simple_repeat 2 52 0 9 1664 914 164 0 0 chr4 141541842 141541976 -14088144 - B1_Mur1 SINE Alu -13 136 3 9 1664 433 254 52 7 chr4 141542115 141542250 -14087870 - B4A SINE B4 -147 145 5 9 1664 255 334 41 27 chr4 141542386 141542525 -14087595 + MIR SINE MIR 65 205 -63 9 1664 633 208 0 16 chr4 141542549 141542671 -14087449 - B1F SINE Alu -25 124 5 9 1664 819 206 20 45 chr4 141542700 141542898 -14087222 - B3A SINE B2 -1 197 5 9 1664 976 199 18 36 chr4 141542935 141543154 -14086966 + B3 SINE B2 2 216 0 9 1664 797 209 0 13 chr4 141543174 141543324 -14086796 + B1_Mur2 SINE Alu 1 148 -1 9 1664 1636 205 33 81 chr4 141543449 141543968 -14086152 + Lx7 LINE L1 7203 7696 0 1 1664 366 127 0 0 chr4 141543982 141544053 -14086067 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 1 1664 223 261 0 0 chr4 141544053 141544118 -14086002 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1664 447 67 5 101 chr4 141544164 141544363 -14085757 + (GGCTG)n Simple_repeat Simple_repeat 1 180 0 1 1664 227 155 35 0 chr4 141544368 141544426 -14085694 + (CTGGGG)n Simple_repeat Simple_repeat 4 63 0 1 1664 298 215 0 0 chr4 141544427 141544492 -14085628 + ID4 SINE ID 3 67 -16 1 1664 370 252 75 0 chr4 141544543 141544650 -14085470 + ORR1E LTR MaLR 241 355 -4 1 1664 431 363 37 29 chr4 141544678 141544919 -14085201 + MLT1F LTR MaLR 305 547 -1 1 1664 292 290 43 65 chr4 141544925 141545100 -14085020 + L1ME2z LINE L1 6140 6311 -133 1 1664 1160 167 28 60 chr4 141545100 141545317 -14084803 + B3 SINE B2 1 210 -6 1 1664 292 290 43 65 chr4 141545317 141545373 -14084747 + L1ME2z LINE L1 6312 6366 -78 1 1664 253 246 28 42 chr4 141545392 141545464 -14084656 - ID4_ SINE ID -4 79 9 1 1664 405 292 28 19 chr4 141545478 141545586 -14084534 - B1F SINE Alu -5 144 36 1 1664 1064 108 0 20 chr4 141546426 141546577 -14083543 - B1_Mur3 SINE Alu 0 149 2 1 1664 263 219 233 0 chr4 141546578 141546651 -14083469 - ID_B1 SINE B4 -128 96 7 1 1664 709 282 0 47 chr4 141546717 141546888 -14083232 - RSINE1 SINE B4 0 165 3 1 1664 450 36 0 0 chr4 141547502 141547558 -14082562 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1664 219 69 0 0 chr4 141547899 141547928 -14082192 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 1664 845 237 26 55 chr4 141548260 141548572 -14081548 + RLTR15 LTR ERVK 1 303 -56 1 1664 335 129 32 0 chr4 141549003 141549065 -14081055 + C-rich Low_complexity Low_complexity 4 67 0 1 1664 488 173 19 58 chr4 141549843 141550308 -14079812 + GA-rich Low_complexity Low_complexity 1 446 0 1 1664 253 267 0 0 chr4 141550376 141550436 -14079684 + PB1D10 SINE Alu 7 66 -51 1 1664 410 221 0 0 chr4 141550768 141550845 -14079275 - B3A SINE B2 -120 78 2 1 1664 228 111 0 0 chr4 141551153 141551189 -14078931 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1664 222 267 0 0 chr4 141551329 141551419 -14078701 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1664 506 158 0 69 chr4 141551426 141551528 -14078592 - B4A SINE B4 -6 286 192 1 1664 465 269 58 90 chr4 141551546 141551701 -14078419 + B4A SINE B4 143 292 0 1 1664 272 240 107 0 chr4 141551726 141551801 -14078319 + MER63D DNA AcHobo 416 498 -563 1 1664 350 304 69 130 chr4 141552261 141552467 -14077653 + L1MD3 LINE L1 6775 6955 -830 1 1664 852 244 105 34 chr4 141552467 141552734 -14077386 + B4 SINE B4 1 286 -6 1 1664 468 304 69 130 chr4 141552734 141553250 -14076870 + L1MD3 LINE L1 6956 7664 -331 1 1664 243 276 0 0 chr4 141553466 141553553 -14076567 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1664 325 164 27 0 chr4 141553560 141553633 -14076487 + CT-rich Low_complexity Low_complexity 4 78 0 1 1664 654 184 41 62 chr4 141553689 141553834 -14076286 - B1_Mur2 SINE Alu -1 148 7 1 1664 452 313 111 58 chr4 141553834 141553896 -14076224 - ID_B1 SINE B4 0 224 7 1 1664 1450 96 163 0 chr4 141554036 141554275 -14075845 - ORR1A4 LTR MaLR -8 321 44 1 1664 310 233 111 15 chr4 141554389 141554524 -14075596 + MLT1K LTR MaLR 335 482 -113 1 1664 510 105 70 0 chr4 141554785 141554871 -14075249 - URR1B DNA MER1_type 0 225 134 1 1664 1543 53 21 0 chr4 141554871 141555060 -14075060 - B2_Mm1a SINE B2 0 193 1 1 1664 687 47 12 0 chr4 141555066 141555152 -14074968 - B2_Mm1t SINE B2 -106 87 1 1 1664 1650 26 0 15 chr4 141555157 141555352 -14074768 - B2_Mm1t SINE B2 0 193 2 1 1664 912 132 20 27 chr4 141556086 141556234 -14073886 + B1_Mur1 SINE Alu 2 148 -1 1 1664 26 50 0 0 chr4 141556266 141556306 -14073814 + AT_rich Low_complexity Low_complexity 1 40 0 1 1664 187 177 32 0 chr4 141556312 141556374 -14073746 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 1 1664 25 0 0 0 chr4 141556378 141556403 -14073717 + AT_rich Low_complexity Low_complexity 1 25 0 1 1664 363 283 128 21 chr4 141556959 141557100 -14073020 + B4 SINE B4 83 281 -11 1 1664 369 0 0 0 chr4 141557101 141557142 -14072978 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1664 258 189 19 0 chr4 141557674 141557727 -14072393 + RSINE1 SINE B4 3 56 -109 1 1665 366 23 0 0 chr4 141558638 141558681 -14071439 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1665 852 214 128 24 chr4 141558801 141559244 -14070876 + RMER15 LTR ERVL 9 529 -46 1 1665 478 318 62 6 chr4 141559279 141559456 -14070664 - B4A SINE B4 -56 236 50 1 1665 1366 218 111 27 chr4 141559458 141559826 -14070294 - MTD LTR MaLR -3 416 18 1 1665 314 98 0 19 chr4 141560015 141560067 -14070053 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 1 1665 1096 198 157 28 chr4 141560079 141560262 -14069858 + B4 SINE B4 3 223 -69 1 1665 225 0 0 0 chr4 141560262 141560287 -14069833 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1665 1096 198 157 28 chr4 141560287 141560358 -14069762 + B4 SINE B4 224 290 -2 1 1665 563 81 12 0 chr4 141560384 141560470 -14069650 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1665 927 293 70 59 chr4 141560470 141560844 -14069276 + MLT1E2 LTR MaLR 200 579 -48 1 1665 223 254 18 0 chr4 141561745 141561800 -14068320 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1665 544 219 43 7 chr4 141561800 141561938 -14068182 - B4 SINE B4 0 292 150 1 1665 403 283 9 28 chr4 141561934 141562043 -14068077 - MTEa LTR MaLR -272 107 1 1 1665 369 0 0 0 chr4 141562278 141562319 -14067801 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1665 318 259 113 15 chr4 141562368 141562486 -14067634 + B4A SINE B4 1 132 -160 1 1665 360 0 0 0 chr4 141562486 141562526 -14067594 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1665 318 259 113 15 chr4 141562526 141562540 -14067580 + B4A SINE B4 133 146 -146 1 1665 251 239 18 4 chr4 141562599 141562663 -14067457 + B3A SINE B2 1 63 -132 1 1665 210 296 235 29 chr4 141562663 141562735 -14067385 + RSINE1 SINE B4 2 165 0 1 1665 675 131 23 11 chr4 141562750 141562927 -14067193 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 1 1665 180 316 12 48 chr4 141563212 141563295 -14066825 + L2b LINE L2 2979 3058 -317 1 1665 200 203 0 33 chr4 141563663 141563724 -14066396 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 1 1665 681 220 90 18 chr4 141563724 141563891 -14066229 - B3A SINE B2 -16 182 4 1 1665 359 41 20 0 chr4 141563911 141563960 -14066160 + (TCC)n Simple_repeat Simple_repeat 1 50 0 1 1665 397 206 168 0 chr4 141564007 141564114 -14066006 - B3 SINE B2 -89 127 3 1 1665 235 283 307 11 chr4 141564303 141564492 -14065628 - MIRb SINE MIR 0 268 24 1 1665 269 306 16 112 chr4 141564545 141564670 -14065450 + RSINE1 SINE B4 16 128 -37 1 1665 772 186 0 48 chr4 141564695 141564842 -14065278 - B1_Mus2 SINE Alu -7 140 1 1 1665 265 353 64 82 chr4 141565134 141565415 -14064705 + ORR1E LTR MaLR 79 354 -5 1 1665 1734 197 27 32 chr4 141565813 141566217 -14063903 + MTD LTR MaLR 2 403 -16 1 1665 567 313 67 44 chr4 141566232 141566529 -14063591 + L1MD2 LINE L1 5703 6006 -353 1 1665 1284 61 6 6 chr4 141567797 141567979 -14062141 - RLTR1B LTR ERV1 -82 430 249 1 1665 811 267 9 41 chr4 141568001 141568220 -14061900 - B3 SINE B2 0 216 5 1 1665 518 255 11 134 chr4 141568735 141568921 -14061199 - RSINE1 SINE B4 0 165 3 1 1665 363 253 11 0 chr4 141569048 141569143 -14060977 + PB1D10 SINE Alu 1 96 -21 1 1665 660 285 6 29 chr4 141569157 141569327 -14060793 + B3 SINE B2 2 167 -49 1 1665 451 252 81 7 chr4 141569452 141569588 -14060532 - ID_B1 SINE B4 -9 215 70 1 1665 281 89 22 0 chr4 141571092 141571137 -14058983 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1665 516 16 0 0 chr4 141571143 141571204 -14058916 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1665 464 332 56 10 chr4 141572115 141572310 -14057810 + MER47B DNA MER2_type 43 246 -172 1 1665 813 267 89 30 chr4 141572409 141572679 -14057441 - B4 SINE B4 -2 290 5 1 1665 510 279 7 14 chr4 141573607 141573749 -14056371 - RSINE1 SINE B4 -19 146 6 1 1665 227 250 27 68 chr4 141574612 141574685 -14055435 + MLT1A LTR MaLR 25 94 -280 1 1665 300 268 28 0 chr4 141574705 141574776 -14055344 + polypyrimidine Low_complexity Low_complexity 1 73 0 1 1665 242 282 92 96 chr4 141575290 141575529 -14054591 - MLT1K LTR MaLR -142 453 216 1 1665 210 231 0 0 chr4 141575594 141575633 -14054487 + B4A SINE B4 46 84 -208 1 1665 540 299 36 100 chr4 141575759 141575823 -14054297 - B4A SINE B4 -2 290 225 1 1665 315 0 0 0 chr4 141575823 141575858 -14054262 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1665 540 299 36 100 chr4 141575858 141576102 -14054018 - B4A SINE B4 -68 224 2 1 1665 202 250 17 29 chr4 141576807 141576980 -14053140 + (TATG)n Simple_repeat Simple_repeat 1 171 0 1 1665 22 0 0 0 chr4 141577166 141577188 -14052932 + AT_rich Low_complexity Low_complexity 1 22 0 1 1665 318 152 0 0 chr4 141577401 141577460 -14052660 - 4.5SRNA scRNA scRNA -35 59 1 1 1665 362 220 14 45 chr4 141577546 141577668 -14052452 - PB1D10 SINE Alu 0 117 6 1 1665 531 256 85 10 chr4 141577702 141577905 -14052215 + ORR1D2 LTR MaLR 5 220 -154 1 1665 825 259 16 5 chr4 141577941 141578131 -14051989 - ID_B1 SINE B4 -20 204 13 1 1665 554 242 64 8 chr4 141578222 141578347 -14051773 - RSINE1 SINE B4 -31 134 3 1 1665 216 0 0 0 chr4 141578435 141578459 -14051661 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1665 887 166 21 69 chr4 141578545 141578714 -14051406 + B2_Mm2 SINE B2 2 164 -31 2 1665 306 0 0 0 chr4 141578714 141578748 -14051372 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2 1665 887 166 21 69 chr4 141578748 141578766 -14051354 + B2_Mm2 SINE B2 165 180 -15 2 1665 1166 63 7 0 chr4 141578768 141578910 -14051210 + B1_Mus1 SINE Alu 2 144 -4 2 1665 886 196 16 53 chr4 141579011 141579200 -14050920 - B3A SINE B2 -16 182 1 2 1665 829 250 80 30 chr4 141579434 141579698 -14050422 - B4A SINE B4 0 292 16 2 1665 248 260 79 10 chr4 141579802 141579903 -14050217 - L1M3 LINE L1 -282 5901 5794 2 1665 936 269 33 70 chr4 141580020 141580413 -14049707 + MTE2a LTR MaLR 21 405 -14 2 1665 276 100 0 0 chr4 141580832 141580872 -14049248 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1665 1272 41 0 0 chr4 141580872 141581019 -14049101 - B1_Mm SINE Alu 0 147 1 2 1665 262 259 81 12 chr4 141581101 141581187 -14048933 - ORR1E LTR MaLR 0 370 279 2 1665 1395 212 105 31 chr4 141581593 141581642 -14048478 - MTEa LTR MaLR -2 377 327 2 1665 456 19 0 0 chr4 141581642 141581695 -14048425 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 2 1665 1395 212 105 31 chr4 141581695 141581996 -14048124 - MTEa LTR MaLR -53 326 3 2 1665 482 320 33 13 chr4 141582000 141582152 -14047968 - ORR1E LTR MaLR -204 155 1 2 1665 308 326 53 15 chr4 141582152 141582283 -14047837 - ORR1E LTR MaLR -223 136 1 2 1665 201 196 0 0 chr4 141582570 141582616 -14047504 + T-rich Low_complexity Low_complexity 1 46 0 2 1665 216 0 0 0 chr4 141582650 141582674 -14047446 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2 1665 1328 95 17 0 chr4 141582674 141582853 -14047267 - B2_Mm2 SINE B2 -12 183 2 2 1665 650 211 0 57 chr4 141582857 141582998 -14047122 + ID_B1 SINE B4 92 224 0 2 1665 2088 131 100 8 chr4 141583455 141583825 -14046295 + MTC LTR MaLR 18 421 0 2 1665 459 234 225 8 chr4 141583936 141584065 -14046055 - RSINE1 SINE B4 -7 158 2 2 1665 963 75 8 0 chr4 141585062 141585195 -14044925 - B1_Mus1 SINE Alu 0 148 15 2 1665 434 221 53 105 chr4 141585065 141585217 -14044903 - B4A SINE B4 -68 224 81 2 1665 568 200 16 50 chr4 141585570 141585691 -14044429 + RSINE1 SINE B4 46 162 -3 2 1665 806 221 81 48 chr4 141585739 141585948 -14044172 - ID_B1 SINE B4 -7 217 2 2 1665 186 133 0 0 chr4 141586038 141586068 -14044052 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1665 1252 48 0 0 chr4 141586070 141586217 -14043903 - B1_Mus2 SINE Alu 0 147 1 2 1665 223 279 44 0 chr4 141588204 141588272 -14041848 - MIR SINE MIR -85 177 107 2 1665 1087 197 34 0 chr4 141588272 141588480 -14041640 + MTE2b LTR MaLR 1 215 -164 2 1665 229 233 33 0 chr4 141588502 141588562 -14041558 + MTE2b LTR MaLR 280 341 -38 2 1665 1403 105 11 0 chr4 141588906 141589097 -14041023 - B2_Mm1t SINE B2 0 193 1 2 1665 207 0 0 0 chr4 141589112 141589135 -14040985 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1665 758 59 174 16 chr4 141589135 141589246 -14040874 - B1_Mm SINE Alu -9 138 7 2 1665 420 212 49 74 chr4 141589159 141589281 -14040839 - MT2B LTR ERVL -353 248 130 2 1665 269 339 126 0 chr4 141589615 141589742 -14040378 + MLT2B1 LTR ERVL 368 510 -57 2 1665 862 229 37 55 chr4 141589744 141589961 -14040159 - ID_B1 SINE B4 -5 219 7 2 1665 550 208 0 0 chr4 141590322 141590423 -14039697 + B1_Mur1 SINE Alu 24 124 -25 2 1665 227 291 8 120 chr4 141590423 141590439 -14039681 + MT2B LTR ERVL 188 291 -310 2 1665 509 110 0 12 chr4 141590451 141590534 -14039586 + (GGA)n Simple_repeat Simple_repeat 1 82 0 2 1665 774 84 0 0 chr4 141590547 141590654 -14039466 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 2 1665 1113 118 0 0 chr4 141590969 141591147 -14038973 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 2 1665 297 222 79 0 chr4 141591229 141591292 -14038828 - RSINE1 SINE B4 -79 86 19 2 1665 385 143 57 0 chr4 141591525 141591595 -14038525 + MTEa LTR MaLR 7 80 -299 2 1665 1049 65 0 0 chr4 141591676 141591815 -14038305 + B1_Mus1 SINE Alu 10 148 0 2 1665 1063 255 30 37 chr4 141592097 141592394 -14037726 + MTEa LTR MaLR 80 374 -5 2 1665 679 138 97 30 chr4 141592447 141592581 -14037539 - URR1B DNA MER1_type 0 225 83 2 1665 378 257 86 46 chr4 141592581 141592592 -14037528 + CYRA11_Mm Unknown Y-chromosome 210 322 -295 2 1665 851 232 151 96 chr4 141592617 141592941 -14037179 + MTE2a LTR MaLR 35 376 -3 2 1665 465 19 0 0 chr4 141595244 141595298 -14034822 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1665 1068 214 10 0 chr4 141595604 141595810 -14034310 - ID_B1 SINE B4 0 224 17 2 1665 1155 62 0 27 chr4 141596183 141596333 -14033787 - B1_Mm SINE Alu -1 146 1 2 1665 697 279 149 31 chr4 141596597 141596852 -14033268 + B4A SINE B4 2 286 -6 2 1665 200 186 17 0 chr4 141596870 141596929 -14033191 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1665 183 139 0 0 chr4 141596928 141596964 -14033156 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1665 1079 167 138 25 chr4 141597849 141598052 -14032068 - URR1A DNA MER1_type 0 226 1 2 1665 1983 112 28 31 chr4 141598505 141598828 -14031292 + RLTRETN_Mm LTR ERVK 1 322 0 2 1665 200 320 0 82 chr4 141599137 141599222 -14030898 - MIRb SINE MIR -164 104 27 2 1665 388 217 10 42 chr4 141599475 141599571 -14030549 + PB1D10 SINE Alu 14 106 -11 2 1665 325 327 88 0 chr4 141599776 141599889 -14030231 - MIRb SINE MIR -121 147 25 2 1665 201 147 0 0 chr4 141601038 141601072 -14029048 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2 1665 1139 203 42 19 chr4 141601077 141601293 -14028827 - ID_B1 SINE B4 0 224 4 2 1665 379 293 71 12 chr4 141601293 141601456 -14028664 + MLT1D LTR MaLR 44 218 -287 2 1665 952 246 10 5 chr4 141602012 141602212 -14027908 + ID_B1 SINE B4 5 205 -19 2 1665 546 16 0 0 chr4 141602365 141602428 -14027692 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 1665 207 0 0 0 chr4 141602460 141602483 -14027637 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1665 204 279 127 0 chr4 141602904 141602983 -14027137 - MIRb SINE MIR -123 145 57 2 1665 680 243 0 7 chr4 141603357 141603502 -14026618 - ID_B1 SINE B4 0 224 81 2 1665 530 259 49 28 chr4 141603506 141603649 -14026471 - MLT1B LTR MaLR -215 175 30 2 1665 794 326 134 27 chr4 141604263 141604704 -14025416 + MLT1J LTR MaLR 25 512 0 2 1665 1020 230 14 9 chr4 141604949 141605164 -14024956 - B3 SINE B2 0 216 1 2 1665 181 289 0 0 chr4 141605900 141605952 -14024168 + MIRc SINE MIR 113 164 -104 2 1665 651 270 16 27 chr4 141605953 141606136 -14023984 + B3A SINE B2 2 182 -16 2 1665 477 172 0 0 chr4 141606149 141606271 -14023849 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 1665 437 244 52 37 chr4 141606403 141606539 -14023581 + ID_B1 SINE B4 86 223 -1 2 1665 302 243 13 51 chr4 141606548 141606626 -14023494 + ID4_ SINE ID 2 76 -7 2 1665 244 340 46 19 chr4 141606848 141606956 -14023164 - MER63A DNA AcHobo -63 147 37 2 1665 490 306 31 52 chr4 141607674 141607779 -14022341 - RMER30 DNA MER1_type -1 201 104 2 1665 297 0 0 0 chr4 141607784 141607817 -14022303 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1665 1142 50 7 14 chr4 141607817 141607954 -14022166 - B1_Mus1 SINE Alu -10 138 1 2 1665 490 306 31 52 chr4 141607954 141608041 -14022079 - RMER30 DNA MER1_type -99 103 13 2 1665 24 0 0 0 chr4 141608392 141608416 -14021704 + GC_rich Low_complexity Low_complexity 1 24 0 2 1665 180 289 50 20 chr4 141608417 141608516 -14021604 - MIR SINE MIR -134 128 27 2 1665 713 262 63 19 chr4 141610054 141610260 -14019860 + ID_B1 SINE B4 2 216 -8 2 1665 997 88 94 6 chr4 141610303 141610463 -14019657 + B2_Mm2 SINE B2 1 174 -21 2 1665 613 307 33 22 chr4 141610657 141610837 -14019283 + B3A SINE B2 1 182 -16 2 1665 225 132 0 0 chr4 141610852 141610890 -14019230 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1665 545 118 0 0 chr4 141610899 141610984 -14019136 - B1_Mus2 SINE Alu -2 145 61 2 1665 283 360 34 89 chr4 141610984 141611046 -14019074 - ID_B1 SINE B4 -2 222 90 2 1665 1716 26 0 0 chr4 141611046 141611237 -14018883 - B2_Mm1a SINE B2 -2 191 1 2 1665 283 360 34 89 chr4 141611237 141611324 -14018796 - ID SINE ID -135 89 1 2 1665 621 101 0 0 chr4 141611369 141611468 -14018652 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1665 614 193 0 0 chr4 141611468 141611577 -14018543 - RSINE1 SINE B4 -41 124 16 2 1665 264 253 12 35 chr4 141611506 141611592 -14018528 - B2_Mm2 SINE B2 -110 85 2 2 1665 606 249 0 75 chr4 141612012 141612186 -14017934 - RSINE1 SINE B4 -1 164 4 2 1665 348 259 12 0 chr4 141612489 141612574 -14017546 - MIR SINE MIR -72 190 105 2 1665 303 159 45 0 chr4 141612803 141612891 -14017229 + GA-rich Low_complexity Low_complexity 2 93 0 2 1665 438 139 0 0 chr4 141613074 141613146 -14016974 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1665 266 316 21 10 chr4 141613146 141613242 -14016878 - MIR SINE MIR -94 168 72 2 1665 284 217 188 0 chr4 141613955 141614024 -14016096 - ID4 SINE ID -1 82 1 2 1665 228 67 0 0 chr4 141614026 141614056 -14016064 + (CACG)n Simple_repeat Simple_repeat 1 30 0 2 1665 510 228 154 0 chr4 141614228 141614253 -14015867 - ID_B1 SINE B4 0 224 200 2 1665 4743 28 0 2 chr4 141614253 141614793 -14015327 + L1Md_F3 LINE L1 6044 6582 -2 2 1665 510 228 154 0 chr4 141614793 141614916 -14015204 - ID_B1 SINE B4 -25 199 54 2 1665 450 0 0 0 chr4 141614930 141614980 -14015140 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1665 231 36 0 0 chr4 141614980 141615007 -14015113 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1665 1377 210 52 101 chr4 141615791 141616112 -14014008 + MTEa LTR MaLR 6 314 -65 2 1665 1113 62 14 14 chr4 141616112 141616259 -14013861 - B1_Mus2 SINE Alu 0 147 1 2 1665 1377 210 52 101 chr4 141616259 141616323 -14013797 + MTEa LTR MaLR 315 372 -7 2 1665 180 216 0 0 chr4 141616334 141616371 -14013749 + MIR SINE MIR 108 144 -118 3 1665 885 251 192 3 chr4 141617113 141617425 -14012695 - MTEa LTR MaLR -8 371 1 3 1665 216 0 0 0 chr4 141617697 141617721 -14012399 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 3 1665 399 248 78 28 chr4 141617756 141617897 -14012223 - RSINE1 SINE B4 -8 157 10 3 1665 348 24 0 0 chr4 141618325 141618366 -14011754 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1665 186 43 0 0 chr4 141618368 141618391 -14011729 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 1665 216 0 0 0 chr4 141618881 141618905 -14011215 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 3 1665 269 359 55 0 chr4 141619415 141619560 -14010560 + MER102c DNA MER1_type 179 331 0 3 1665 299 287 29 52 chr4 141620136 141620272 -14009848 - ORR1E LTR MaLR -168 191 59 3 1665 396 55 0 0 chr4 141620297 141620352 -14009768 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 3 1665 892 256 52 35 chr4 141620371 141620658 -14009462 - B4 SINE B4 0 292 1 3 1665 670 163 7 2 chr4 141620970 141621098 -14009022 + ID_B1 SINE B4 87 223 -69 3 1665 300 269 109 65 chr4 141621459 141621612 -14008508 - MIRc SINE MIR -97 171 11 3 1665 565 218 199 38 chr4 141621635 141621821 -14008299 + ID_B1 SINE B4 1 216 -8 3 1665 237 342 36 36 chr4 141622065 141622232 -14007888 + LTR33C LTR ERVL 34 200 -429 3 1665 266 197 0 129 chr4 141622961 141623031 -14007089 - ID4_ SINE ID 0 83 23 3 1665 673 265 0 0 chr4 141623074 141623221 -14006899 - B1_Mur1 SINE Alu -1 148 2 3 1665 211 274 40 14 chr4 141623262 141623336 -14006784 - PB1 SINE Alu -50 77 2 3 1665 294 304 62 0 chr4 141623361 141623473 -14006647 + L1MB5 LINE L1 6040 6158 -16 3 1665 594 305 99 29 chr4 141623892 141624146 -14005974 + ID_B1 SINE B4 26 291 -1 3 1665 414 214 0 23 chr4 141624149 141624235 -14005885 - PB1D10 SINE Alu -31 86 3 3 1665 456 272 25 75 chr4 141625048 141625207 -14004913 + RSINE1 SINE B4 15 165 0 3 1665 212 271 80 34 chr4 141625228 141625316 -14004804 + MIR SINE MIR 2 93 -169 3 1665 1965 111 73 102 chr4 141625561 141625744 -14004376 + RMER10B LTR ERVL 1 192 -206 3 1665 1212 106 0 0 chr4 141625744 141625923 -14004197 + (TC)n Simple_repeat Simple_repeat 1 179 0 3 1665 1965 111 73 102 chr4 141625923 141626149 -14003971 + RMER10B LTR ERVL 193 397 -1 3 1665 207 133 0 0 chr4 141626167 141626212 -14003908 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1665 251 211 13 101 chr4 141627152 141627231 -14002889 - Charlie24 DNA MER1_type -3 2447 2376 3 1665 226 240 0 0 chr4 141628369 141628419 -14001701 - ID4 SINE ID -29 54 5 3 1665 523 269 234 0 chr4 141628519 141628690 -14001430 - ID_B1 SINE B4 -9 215 5 3 1665 520 229 60 89 chr4 141628740 141628908 -14001212 - RSINE1 SINE B4 0 165 3 3 1665 400 86 0 0 chr4 141629221 141629279 -14000841 - B1_Mus1 SINE Alu -89 59 2 3 1665 508 328 76 29 chr4 141629315 141629695 -14000425 + L1MD3 LINE L1 7436 7833 -162 3 1665 437 244 196 29 chr4 141629725 141629898 -14000222 + MER2 DNA MER2_type 7 208 -137 3 1665 461 217 0 0 chr4 141629904 141629996 -14000124 + PB1D10 SINE Alu 14 105 -12 3 1665 582 291 40 15 chr4 141629991 141630190 -13999930 - MTE2a LTR MaLR -7 372 169 3 1665 345 225 0 0 chr4 141630192 141630281 -13999839 + GA-rich Low_complexity Low_complexity 3 91 0 3 1665 231 307 88 88 chr4 141630837 141630962 -13999158 - RSINE1 SINE B4 -39 126 2 3 1665 244 294 139 2 chr4 141631279 141631423 -13998697 - L1M3 LINE L1 -404 5767 5596 3 1665 681 228 114 20 chr4 141631638 141631839 -13998281 + ID_B1 SINE B4 3 222 -2 3 1665 226 51 0 25 chr4 141632227 141632254 -13997866 + B1_Mur4 SINE Alu 111 137 -13 3 1665 288 53 0 0 chr4 141632254 141632292 -13997828 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 3 1665 226 51 0 25 chr4 141632292 141632304 -13997816 + B1_Mur4 SINE Alu 138 149 -1 3 1665 429 70 0 0 chr4 141632706 141632763 -13997357 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1665 717 67 0 0 chr4 141632763 141632867 -13997253 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 1665 237 65 0 0 chr4 141632867 141632898 -13997222 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 3 1665 780 218 81 14 chr4 141632898 141633107 -13997013 + ID_B1 SINE B4 2 224 0 3 1665 948 203 37 46 chr4 141633227 141633444 -13996676 - B3 SINE B2 0 216 2 3 1665 279 0 0 0 chr4 141634301 141634332 -13995788 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1665 816 143 57 7 chr4 141634375 141634507 -13995613 + B1_Mur1 SINE Alu 2 141 -8 3 1665 369 0 0 0 chr4 141634507 141634548 -13995572 + (CTA)n Simple_repeat Simple_repeat 1 41 0 3 1665 502 239 73 0 chr4 141634578 141634687 -13995433 + RSINE1 SINE B4 3 119 -46 3 1665 32 0 0 0 chr4 141634740 141634772 -13995348 + AT_rich Low_complexity Low_complexity 1 32 0 3 1665 586 250 19 21 chr4 141634875 141635042 -13995078 + ID_B1 SINE B4 92 260 -32 3 1665 235 228 35 0 chr4 141635245 141635302 -13994818 - B3A SINE B2 -12 186 128 3 1665 385 230 9 91 chr4 141635255 141635365 -13994755 - B4A SINE B4 0 292 192 3 1665 250 129 14 28 chr4 141635371 141635443 -13994677 + T-rich Low_complexity Low_complexity 2 72 0 3 1665 260 128 0 0 chr4 141635548 141635587 -13994533 - B3A SINE B2 -159 39 1 3 1665 385 258 120 8 chr4 141636283 141636416 -13993704 + B1F SINE Alu 1 148 -1 3 1665 698 218 25 31 chr4 141636451 141636612 -13993508 + RSINE1 SINE B4 6 165 0 3 1665 225 328 121 60 chr4 141636612 141636633 -13993487 + B3A SINE B2 5 197 -1 3 1665 290 303 59 76 chr4 141636684 141636802 -13993318 + MIR3 SINE MIR 87 202 -6 3 1665 24 32 0 0 chr4 141637130 141637161 -13992959 + GC_rich Low_complexity Low_complexity 1 31 0 3 1665 567 0 0 0 chr4 141637473 141637536 -13992584 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1665 308 247 26 13 chr4 141638205 141638283 -13991837 - ID4_ SINE ID -3 80 2 3 1665 199 281 62 0 chr4 141639511 141639575 -13990545 - MIR3 SINE MIR -32 176 109 3 1665 21 0 0 0 chr4 141639852 141639873 -13990247 + GC_rich Low_complexity Low_complexity 1 21 0 3 1665 333 0 0 0 chr4 141640889 141640926 -13989194 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1665 432 0 0 0 chr4 141640926 141640973 -13989147 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1665 2092 153 132 0 chr4 141641710 141641847 -13988273 + MTC LTR MaLR 1 137 -284 3 1665 459 0 0 0 chr4 141641847 141641898 -13988222 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1665 2092 153 132 0 chr4 141641898 141642088 -13988032 + MTC LTR MaLR 138 350 -71 3 1665 405 0 0 0 chr4 141642088 141642133 -13987987 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1665 2092 153 132 0 chr4 141642133 141642176 -13987944 + MTC LTR MaLR 351 419 -2 3 1665 609 283 127 52 chr4 141642398 141642842 -13987278 + MLT1D LTR MaLR 8 505 0 3 1665 335 261 32 11 chr4 141643014 141643107 -13987013 + MIRc SINE MIR 69 163 -105 3 1665 257 238 0 60 chr4 141643117 141643184 -13986936 + PB1 SINE Alu 11 73 -54 3 1665 903 198 75 15 chr4 141643348 141643548 -13986572 + ID_B1 SINE B4 1 212 -12 3 1665 327 200 13 26 chr4 141643851 141643928 -13986192 + ID_B1 SINE B4 86 161 -63 3 1665 398 253 56 49 chr4 141644134 141644296 -13985824 + RSINE1 SINE B4 3 165 0 3 1665 371 237 127 49 chr4 141644327 141644469 -13985651 + RSINE1 SINE B4 3 155 -10 3 1665 216 183 16 32 chr4 141645096 141645158 -13984962 + T-rich Low_complexity Low_complexity 3 63 0 3 1665 897 100 0 0 chr4 141645194 141645324 -13984796 + (TTC)n Simple_repeat Simple_repeat 3 132 0 3 1665 1305 47 45 28 chr4 141645326 141645503 -13984617 - B2_Mm2 SINE B2 -15 180 1 3 1665 441 0 0 0 chr4 141645503 141645552 -13984568 + (TTG)n Simple_repeat Simple_repeat 2 50 0 3 1665 345 158 18 0 chr4 141645553 141645610 -13984510 - B1F1 SINE Alu -11 138 81 3 1665 516 263 15 8 chr4 141645612 141645746 -13984374 - B1F2 SINE Alu -13 136 2 3 1665 420 256 37 52 chr4 141645630 141645766 -13984354 - ID_B1 SINE B4 -28 196 63 3 1665 509 234 0 0 chr4 141646365 141646472 -13983648 + MTD LTR MaLR 14 120 -299 3 1665 1090 111 0 22 chr4 141646478 141646662 -13983458 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1665 768 170 254 12 chr4 141646714 141646887 -13983233 - B3 SINE B2 0 216 2 3 1665 1508 217 26 0 chr4 141646887 141647191 -13982929 + MTD LTR MaLR 107 418 -1 3 1665 837 279 16 24 chr4 141647439 141647499 -13982621 + B4A SINE B4 27 85 -207 3 1665 258 32 0 0 chr4 141647499 141647530 -13982590 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1665 837 279 16 24 chr4 141647530 141647715 -13982405 + B4A SINE B4 86 269 -23 3 1665 471 35 0 0 chr4 141647715 141647772 -13982348 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1665 1411 89 10 10 chr4 141648162 141648355 -13981765 - B2_Mm1a SINE B2 0 193 1 3 1665 774 170 20 54 chr4 141648512 141648530 -13981590 + MTEa LTR MaLR 1 17 -362 3 1665 1980 126 26 73 chr4 141648530 141648872 -13981248 + ORR1A4 LTR MaLR 3 328 -1 3 1665 774 170 20 54 chr4 141648872 141649002 -13981118 + MTEa LTR MaLR 18 144 -235 3 1665 742 282 24 0 chr4 141649002 141649208 -13980912 + ID_B1 SINE B4 2 212 -12 3 1665 482 0 17 0 chr4 141649208 141649266 -13980854 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3 1665 577 263 190 72 chr4 141649266 141649302 -13980818 + MTEa LTR MaLR 145 216 -163 3 1665 1106 180 158 139 chr4 141649302 141649442 -13980678 + ORR1D1 LTR MaLR 1 178 -196 3 1665 483 90 0 0 chr4 141649442 141649520 -13980600 + (TCTG)n Simple_repeat Simple_repeat 3 80 0 3 1665 1106 180 158 139 chr4 141649520 141649636 -13980484 + ORR1D1 LTR MaLR 179 275 -99 3 1665 1621 32 5 0 chr4 141649636 141649822 -13980298 + B2_Mm1a SINE B2 2 188 -5 3 1665 1106 180 158 139 chr4 141649822 141649931 -13980189 + ORR1D1 LTR MaLR 276 373 -1 3 1665 577 263 190 72 chr4 141649931 141649964 -13980156 + MTEa LTR MaLR 217 246 -133 3 1665 229 147 0 0 chr4 141649983 141650017 -13980103 + MTEa LTR MaLR 215 248 -131 3 1665 243 118 0 0 chr4 141650036 141650070 -13980050 + MTEa LTR MaLR 215 248 -131 3 1665 500 224 38 75 chr4 141650089 141650248 -13979872 + MTEa LTR MaLR 215 367 -12 3 1665 288 206 5 16 chr4 141650259 141650328 -13979792 - PB1D10 SINE Alu -62 87 17 3 1665 221 241 0 18 chr4 141650919 141650974 -13979146 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1665 234 297 27 0 chr4 141651231 141651305 -13978815 - ID_B1 SINE B4 -1 223 148 4 1665 872 188 80 10 chr4 141652225 141652424 -13977696 - ID_B1 SINE B4 0 224 12 4 1665 491 0 17 0 chr4 141652425 141652484 -13977636 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1665 2687 64 3 0 chr4 141652613 141652939 -13977181 + ORR1A2 LTR MaLR 1 327 0 4 1665 228 387 33 16 chr4 141653011 141653132 -13976988 + MIR SINE MIR 23 145 -117 4 1665 762 147 0 0 chr4 141653200 141653329 -13976791 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 4 1665 1354 66 65 16 chr4 141653329 141653515 -13976605 - B2_Mm2 SINE B2 0 195 1 4 1665 186 189 0 0 chr4 141654853 141654890 -13975230 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1665 479 345 121 12 chr4 141655013 141655262 -13974858 + MLT1B LTR MaLR 1 276 -114 4 1665 261 281 35 30 chr4 141655430 141655599 -13974521 + (TGGG)n Simple_repeat Simple_repeat 3 172 0 4 1665 305 253 0 66 chr4 141655800 141655982 -13974138 + (TGGG)n Simple_repeat Simple_repeat 1 170 0 4 1665 419 340 90 8 chr4 141656026 141656260 -13973860 - MER2 DNA MER2_type -92 253 1 4 1665 228 351 56 7 chr4 141656609 141656789 -13973331 - MIR SINE MIR -70 192 4 4 1665 1349 145 0 22 chr4 141656908 141657133 -13972987 + URR1B DNA MER1_type 6 225 0 4 1665 558 250 36 7 chr4 141657312 141657449 -13972671 + B1F1 SINE Alu 2 142 -7 4 1665 224 310 95 14 chr4 141659720 141659867 -13970253 - MIR SINE MIR -45 217 59 4 1665 346 335 11 34 chr4 141661252 141661428 -13968692 + MIRb SINE MIR 22 193 -75 4 1665 441 219 31 13 chr4 141661778 141661888 -13968232 + PB1D10 SINE Alu 14 120 -29 4 1665 595 292 13 7 chr4 141661888 141662043 -13968077 + RSINE1 SINE B4 4 159 -6 4 1665 409 240 51 58 chr4 141662043 141662069 -13968051 + B1F1 SINE Alu 121 149 0 4 1665 248 264 32 42 chr4 141662088 141662183 -13967937 + BC1_Mm scRNA scRNA 3 96 -56 4 1665 644 257 7 53 chr4 141662909 141663061 -13967059 + B3 SINE B2 17 161 -55 4 1665 360 0 0 0 chr4 141663069 141663109 -13967011 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1665 319 270 0 26 chr4 141663150 141663226 -13966894 + ID4 SINE ID 8 81 -2 4 1665 1032 124 0 0 chr4 141663252 141663421 -13966699 + (TG)n Simple_repeat Simple_repeat 2 170 0 4 1665 1166 49 7 27 chr4 141664836 141664984 -13965136 + B1_Mus1 SINE Alu 2 146 -2 4 1665 1795 167 34 63 chr4 141665743 141666121 -13963999 + ORR1D1 LTR MaLR 8 374 0 4 1665 1335 99 1 0 chr4 141666905 141667669 -13962451 + (TGGA)n Simple_repeat Simple_repeat 1 764 0 4 1665 446 262 0 16 chr4 141667765 141667947 -13962173 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 4 1665 1167 94 0 0 chr4 141668473 141668653 -13961467 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1665 200 174 69 42 chr4 141668657 141668729 -13961391 + (CAGA)n Simple_repeat Simple_repeat 1 74 0 4 1665 180 77 0 0 chr4 141668755 141668781 -13961339 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 4 1665 220 339 78 9 chr4 141670907 141671023 -13959097 + MIRb SINE MIR 99 222 -46 4 1665 208 241 51 17 chr4 141671460 141671519 -13958601 - MIRm SINE MIR -117 159 99 4 1665 416 304 52 42 chr4 141671822 141672014 -13958106 + MLT1A LTR MaLR 181 374 0 4 1665 773 163 29 29 chr4 141673349 141673488 -13956632 + B1_Mus1 SINE Alu 3 141 -7 4 1665 376 292 20 80 chr4 141674283 141674484 -13955636 + Lx8 LINE L1 7245 7433 -40 4 1665 821 224 51 130 chr4 141675004 141675077 -13955043 + B4 SINE B4 21 91 -201 4 1665 427 238 108 64 chr4 141675077 141675234 -13954886 + RSINE1 SINE B4 2 165 0 4 1665 821 224 51 130 chr4 141675234 141675453 -13954667 + B4 SINE B4 92 290 -2 4 1665 492 315 0 22 chr4 141676212 141676394 -13953726 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1665 303 98 0 56 chr4 141676416 141676470 -13953650 - HAL1-3A_ME LINE L1 -831 2027 1977 4 1665 435 331 0 0 chr4 141676476 141676606 -13953514 + (TG)n Simple_repeat Simple_repeat 1 130 0 4 1665 3820 144 104 12 chr4 141676783 141677473 -13952647 + RMER6A LTR ERVK 3 756 0 4 1665 366 23 0 0 chr4 141677736 141677779 -13952341 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1665 995 140 6 0 chr4 141677958 141678129 -13951991 + (GAA)n Simple_repeat Simple_repeat 1 172 0 4 1665 350 283 172 0 chr4 141678427 141678572 -13951548 + MER5A DNA MER1_type 2 171 -18 4 1665 231 206 27 27 chr4 141679186 141679261 -13950859 - L1MEg LINE L1 -4846 1379 1305 4 1665 603 0 0 0 chr4 141679268 141679335 -13950785 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 4 1665 208 175 50 0 chr4 141679347 141679427 -13950693 + (TCTCTG)n Simple_repeat Simple_repeat 4 87 0 4 1665 437 166 11 34 chr4 141679450 141679625 -13950495 + (TCTCTG)n Simple_repeat Simple_repeat 4 174 0 4 1665 299 197 0 43 chr4 141679640 141679826 -13950294 + (TCTCTG)n Simple_repeat Simple_repeat 3 180 0 4 1665 496 275 102 71 chr4 141679871 141680137 -13949983 - B4 SINE B4 -18 274 1 4 1665 374 267 95 15 chr4 141680367 141680486 -13949634 + MER3 DNA MER1_type 17 179 -30 4 1665 1041 97 7 33 chr4 141680486 141680636 -13949484 - B1_Mus2 SINE Alu 0 147 2 4 1665 320 267 95 15 chr4 141680636 141680653 -13949467 + Charlie5 DNA MER1_type 147 163 -2461 4 1665 229 290 63 35 chr4 141680821 141680964 -13949156 - L1MEg LINE L1 -5060 1059 913 4 1665 577 301 24 6 chr4 141681142 141681306 -13948814 - ID_B1 SINE B4 -35 189 23 4 1665 237 65 0 0 chr4 141681574 141681605 -13948515 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1665 306 0 0 0 chr4 141681605 141681639 -13948481 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1665 405 0 0 0 chr4 141681912 141681957 -13948163 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1665 196 286 0 73 chr4 141682134 141682202 -13947918 + L3 LINE CR1 3158 3220 -1269 4 1665 696 182 12 16 chr4 141682332 141682664 -13947456 + GA-rich Low_complexity Low_complexity 1 330 0 4 1665 1417 83 0 6 chr4 141684047 141684228 -13945892 + B2_Mm2 SINE B2 2 181 -14 4 1665 668 288 6 27 chr4 141684470 141684680 -13945440 - ID_B1 SINE B4 -46 246 44 4 1665 215 330 40 20 chr4 141685265 141685364 -13944756 + MIRb SINE MIR 95 195 -73 4 1665 218 193 49 66 chr4 141685455 141685516 -13944604 + MIRb SINE MIR 190 249 -19 4 1665 262 308 84 0 chr4 141686116 141686223 -13943897 + Charlie8 DNA MER1_type 126 241 -2187 4 1665 239 309 127 0 chr4 141686613 141686723 -13943397 - MIRb SINE MIR -58 210 87 4 1665 1281 157 8 63 chr4 141686905 141687143 -13942977 - URR1B DNA MER1_type 0 225 1 4 1665 703 266 75 31 chr4 141687606 141687851 -13942269 - ID_B1 SINE B4 -35 257 1 4 1665 281 342 84 0 chr4 141688576 141688735 -13941385 - MIRc SINE MIR -80 188 18 4 1666 262 260 26 0 chr4 141690270 141690347 -13939773 + MIR SINE MIR 40 118 -144 4 1666 459 0 0 0 chr4 141690413 141690464 -13939656 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1666 291 206 164 0 chr4 141691116 141691262 -13938858 + RMER17C LTR ERVK 103 272 -138 4 1666 641 181 0 8 chr4 141691264 141691382 -13938738 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 1666 357 24 0 0 chr4 141691382 141691424 -13938696 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1666 641 181 0 8 chr4 141691424 141691439 -13938681 + (TA)n Simple_repeat Simple_repeat 2 16 0 4 1666 384 255 47 9 chr4 141691720 141691827 -13938293 - ID_B1 SINE B4 -13 211 101 4 1666 803 137 107 0 chr4 141692137 141692268 -13937852 - B1_Mus1 SINE Alu -2 146 2 4 1666 381 281 97 0 chr4 141692489 141692603 -13937517 + PB1 SINE Alu 1 125 -2 4 1666 215 324 14 14 chr4 141692625 141692694 -13937426 + ID4_ SINE ID 5 73 -10 4 1666 259 320 13 0 chr4 141693236 141693311 -13936809 + ID_B1 SINE B4 45 120 -104 4 1666 230 261 248 16 chr4 141693321 141693442 -13936678 + MIR SINE MIR 120 268 0 4 1666 260 254 14 14 chr4 141693673 141693745 -13936375 + ID4 SINE ID 3 74 -9 4 1666 1113 43 65 0 chr4 141693827 141693965 -13936155 - B1_Mm SINE Alu 0 147 1 4 1666 23 0 0 0 chr4 141695183 141695206 -13934914 + AT_rich Low_complexity Low_complexity 1 23 0 4 1666 23 0 0 0 chr4 141696388 141696411 -13933709 + AT_rich Low_complexity Low_complexity 1 23 0 4 1666 200 79 0 50 chr4 141697224 141697264 -13932856 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1666 987 156 194 0 chr4 141698482 141698662 -13931458 + B3 SINE B2 1 215 -1 4 1666 240 274 81 0 chr4 141699608 141699732 -13930388 + BC1_Mm scRNA scRNA 1 134 -18 4 1666 220 338 0 26 chr4 141699866 141699942 -13930178 - MIRc SINE MIR -176 92 19 4 1666 1159 281 21 7 chr4 141701076 141701356 -13928764 - B4 SINE B4 -7 285 2 4 1666 1266 164 5 18 chr4 141701612 141701829 -13928291 + B3 SINE B2 3 216 0 4 1666 1233 54 7 0 chr4 141701834 141701981 -13928139 + B1_Mus1 SINE Alu 1 148 0 4 1666 345 93 0 0 chr4 141701984 141702038 -13928082 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 4 1666 294 252 110 10 chr4 141702240 141702340 -13927780 + ORR1E LTR MaLR 2 111 -248 4 1666 195 212 0 88 chr4 141703118 141703175 -13926945 - MIRm SINE MIR -125 151 94 4 1666 286 163 61 0 chr4 141703646 141703695 -13926425 - B4A SINE B4 -18 274 223 4 1666 647 215 37 9 chr4 141703693 141703841 -13926279 - B3 SINE B2 -10 185 46 4 1666 430 340 79 12 chr4 141703835 141704032 -13926088 - B4A SINE B4 -52 240 29 4 1666 208 318 0 0 chr4 141704337 141704400 -13925720 + MIRc SINE MIR 78 140 -128 4 1666 1245 232 23 29 chr4 141704421 141704727 -13925393 + MTD LTR MaLR 1 304 -115 4 1666 1070 159 149 0 chr4 141705904 141706099 -13924021 - URR1B DNA MER1_type 0 225 2 4 1666 394 245 38 17 chr4 141706418 141706548 -13923572 + MLT1K LTR MaLR 105 255 -340 4 1666 396 0 0 0 chr4 141707216 141707260 -13922860 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1666 470 319 50 25 chr4 141707286 141707447 -13922673 - B4 SINE B4 0 292 128 4 1666 973 105 187 6 chr4 141707455 141707637 -13922483 + ORR1B1 LTR MaLR 1 215 -179 5 1666 986 59 0 22 chr4 141708529 141708667 -13921453 - B1_Mus1 SINE Alu 0 148 14 5 1666 486 49 0 0 chr4 141709881 141709942 -13920178 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 5 1666 276 30 0 0 chr4 141710838 141710871 -13919249 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 5 1666 393 110 0 0 chr4 141710872 141710945 -13919175 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 5 1666 787 223 130 15 chr4 141710969 141711169 -13918951 - ID_B1 SINE B4 -1 223 1 5 1666 374 254 43 75 chr4 141712110 141712286 -13917834 - MIRb SINE MIR -35 233 64 5 1666 660 276 93 78 chr4 141713378 141713737 -13916383 + ORR1E LTR MaLR 1 361 -18 5 1666 653 261 0 0 chr4 141713814 141713944 -13916176 - RSINE1 SINE B4 -33 132 3 5 1666 1402 228 136 9 chr4 141714110 141714442 -13915678 + MTEa LTR MaLR 4 377 -2 5 1666 181 257 297 0 chr4 141714583 141714657 -13915463 - MIRb SINE MIR -77 191 96 5 1666 239 224 0 49 chr4 141714880 141714941 -13915179 + G-rich Low_complexity Low_complexity 2 59 0 5 1666 460 212 72 7 chr4 141715486 141715624 -13914496 + L1M4 LINE L1 5134 5280 -866 5 1666 486 302 16 8 chr4 141715625 141715752 -13914368 + RSINE1 SINE B4 2 129 -36 5 1666 276 30 0 0 chr4 141715779 141715812 -13914308 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1666 23 54 0 0 chr4 141715814 141715851 -13914269 + AT_rich Low_complexity Low_complexity 1 37 0 5 1666 714 142 15 38 chr4 141715882 141716014 -13914106 + B3A SINE B2 1 129 -69 5 1666 246 213 47 47 chr4 141716455 141716519 -13913601 + RSINE1 SINE B4 71 134 -31 5 1666 225 0 0 0 chr4 141716536 141716561 -13913559 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 5 1666 1548 58 16 0 chr4 141716931 141717122 -13912998 - B2_Mm2 SINE B2 0 195 2 5 1666 3019 81 5 15 chr4 141717122 141717522 -13912598 + MTA_Mm LTR MaLR 1 396 0 5 1666 511 271 15 147 chr4 141717819 141718047 -13912073 - ORR1E LTR MaLR 0 370 164 5 1666 202 114 29 0 chr4 141718054 141718089 -13912031 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 5 1666 813 254 11 26 chr4 141718089 141718279 -13911841 - ORR1E LTR MaLR -168 191 5 5 1666 426 53 0 0 chr4 141718336 141718393 -13911727 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1666 502 268 204 18 chr4 141718997 141719164 -13910956 + B3A SINE B2 1 198 0 5 1666 291 28 0 0 chr4 141719564 141719600 -13910520 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1666 378 0 0 0 chr4 141719874 141719916 -13910204 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1666 436 99 44 0 chr4 141720180 141720271 -13909849 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 5 1666 1909 132 102 3 chr4 141720436 141720809 -13909311 + RMER17C LTR ERVK 1 410 0 5 1666 180 0 0 0 chr4 141721172 141721192 -13908928 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1666 1456 78 0 45 chr4 141721669 141721871 -13908249 - B2_Mm2 SINE B2 -1 194 2 5 1666 251 191 88 0 chr4 141721903 141721971 -13908149 + MIRc SINE MIR 43 116 -152 5 1666 262 238 74 12 chr4 141722842 141722923 -13907197 + MIR SINE MIR 18 103 -159 5 1666 468 0 0 0 chr4 141723025 141723077 -13907043 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1666 713 237 122 27 chr4 141723148 141723369 -13906751 + B4 SINE B4 2 243 -49 5 1666 488 276 45 0 chr4 141723612 141723746 -13906374 - RSINE1 SINE B4 -6 159 20 5 1666 209 306 84 0 chr4 141724758 141724875 -13905245 - L2c LINE L2 -273 3114 2984 5 1666 812 279 28 13 chr4 141726275 141726496 -13903624 + ID_B1 SINE B4 1 236 -56 5 1666 512 291 15 22 chr4 141726600 141726737 -13903383 + B4A SINE B4 157 292 0 5 1666 186 43 0 0 chr4 141726800 141726823 -13903297 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1666 213 94 0 0 chr4 141728294 141728326 -13901794 + (C)n Simple_repeat Simple_repeat 1 32 0 5 1666 259 286 26 0 chr4 141728705 141728782 -13901338 + ID4_ SINE ID 3 81 -2 5 1666 676 233 7 7 chr4 141728726 141728780 -13901340 + ID SINE ID 27 80 -144 5 1666 306 320 73 16 chr4 141728780 141728904 -13901216 + B1_Mur2 SINE Alu 1 131 -18 5 1666 265 322 0 0 chr4 141729478 141729565 -13900555 + L2a LINE L2 3338 3424 -2 5 1666 306 0 0 0 chr4 141730877 141730911 -13899209 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1666 586 323 117 19 chr4 141730953 141731218 -13898902 - B4 SINE B4 0 292 2 5 1666 265 356 10 10 chr4 141731219 141731321 -13898799 - MIR SINE MIR -120 142 41 5 1666 412 286 0 54 chr4 141731357 141731468 -13898652 - ID_B1 SINE B4 -109 115 11 5 1666 191 371 16 41 chr4 141731479 141731600 -13898520 - MIRb SINE MIR -81 187 70 5 1666 1906 124 29 6 chr4 141731829 141732140 -13897980 + RLTR28 LTR ERVL 1 318 -206 5 1666 690 136 0 9 chr4 141732140 141732251 -13897869 + B2_Mm2 SINE B2 2 111 -84 5 1666 818 151 6 0 chr4 141732278 141732437 -13897683 + RLTR28 LTR ERVL 365 524 0 5 1666 273 146 0 0 chr4 141732604 141732645 -13897475 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1666 655 305 63 81 chr4 141732792 141733127 -13896993 - ORR1E LTR MaLR -5 354 26 5 1666 1024 267 120 12 chr4 141733175 141733501 -13896619 - MTEa LTR MaLR -18 361 1 5 1666 216 158 0 0 chr4 141734604 141734642 -13895478 + (CG)n Simple_repeat Simple_repeat 2 39 0 5 1666 1153 128 81 33 chr4 141734958 141735168 -13894952 - URR1A DNA MER1_type -2 224 5 5 1666 1170 68 0 13 chr4 141735211 141735360 -13894760 - B1_Mm SINE Alu 0 147 1 5 1666 213 273 61 0 chr4 141736044 141736110 -13894010 + MIR SINE MIR 116 185 -77 5 1666 254 351 23 2 chr4 141736546 141736650 -13893470 - MIRm SINE MIR -104 164 60 5 1666 398 141 44 19 chr4 141737240 141737399 -13892721 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 1666 211 291 70 0 chr4 141738427 141738513 -13891607 - MIRb SINE MIR -122 146 55 5 1666 279 0 0 0 chr4 141739592 141739623 -13890497 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1666 497 260 96 0 chr4 141739639 141739789 -13890331 - B3A SINE B2 -30 186 26 5 1666 502 267 56 27 chr4 141740246 141740397 -13889723 + MTE2b LTR MaLR 64 227 -152 5 1666 253 328 114 8 chr4 141740472 141740595 -13889525 - MLT1C LTR MaLR -323 144 9 5 1666 412 323 8 0 chr4 141740736 141740860 -13889260 - MER58A DNA MER1_type -74 150 26 5 1666 455 313 88 46 chr4 141741347 141741675 -13888445 - ORR1E LTR MaLR -11 348 7 5 1666 659 204 29 0 chr4 141742219 141742356 -13887764 + B3 SINE B2 76 216 0 5 1666 1004 104 7 20 chr4 141742380 141742527 -13887593 - B1_Mus2 SINE Alu -2 145 1 5 1666 186 132 37 19 chr4 141744105 141744159 -13885961 + CT-rich Low_complexity Low_complexity 2 56 0 5 1666 279 306 158 24 chr4 141745355 141745519 -13884601 + MIRb SINE MIR 69 254 -14 5 1666 317 219 0 27 chr4 141745797 141745872 -13884248 - PB1D10 SINE Alu -42 75 3 5 1666 656 263 13 7 chr4 141747131 141747284 -13882836 - RSINE1 SINE B4 -1 164 11 5 1666 807 225 112 25 chr4 141747288 141747360 -13882760 - ID_B1 SINE B4 0 224 153 5 1666 1468 75 16 0 chr4 141747360 141747547 -13882573 - B2_Mm2 SINE B2 -4 191 2 5 1666 807 225 112 25 chr4 141747547 141747670 -13882450 - ID_B1 SINE B4 -72 152 12 5 1666 200 337 199 0 chr4 141747719 141747900 -13882220 - MIR SINE MIR -11 251 35 5 1666 235 352 96 0 chr4 141748164 141748310 -13881810 + MIRc SINE MIR 6 164 -104 5 1666 643 99 0 0 chr4 141750481 141750572 -13879548 + B2_Mm2 SINE B2 2 92 -103 5 1666 386 38 0 19 chr4 141750572 141750625 -13879495 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 5 1666 417 253 0 0 chr4 141750625 141750704 -13879416 - ID4_ SINE ID -3 80 2 5 1666 458 221 103 26 chr4 141750713 141750829 -13879291 - PB1 SINE Alu -2 125 1 5 1666 232 211 18 0 chr4 141750919 141750976 -13879144 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1666 217 135 289 0 chr4 141751075 141751127 -13878993 - PB1D9 SINE Alu -5 115 49 5 1666 573 55 0 0 chr4 141751147 141751220 -13878900 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1666 1460 145 8 19 chr4 141751631 141751892 -13878228 - RMER1B Other Other -322 744 487 5 1666 546 243 95 7 chr4 141751895 141752032 -13878088 + RSINE1 SINE B4 15 163 -2 5 1666 1154 83 0 0 chr4 141752085 141752229 -13877891 + B1_Mus1 SINE Alu 5 148 0 5 1666 615 266 52 6 chr4 141753531 141753705 -13876415 + ID_B1 SINE B4 1 182 -42 5 1666 474 225 7 19 chr4 141753706 141753813 -13876307 + GA-rich Low_complexity Low_complexity 3 108 0 5 1666 1085 96 11 11 chr4 141753813 141753993 -13876127 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1666 474 225 7 19 chr4 141753993 141754039 -13876081 + polypurine Low_complexity Low_complexity 109 154 0 5 1666 1106 98 11 11 chr4 141754041 141754393 -13875727 + (GGA)n Simple_repeat Simple_repeat 1 352 0 5 1666 977 231 50 5 chr4 141754470 141754670 -13875450 + B3 SINE B2 1 209 -7 5 1666 765 235 0 26 chr4 141754817 141754970 -13875150 + B1_Mur1 SINE Alu 1 149 0 5 1666 320 364 67 10 chr4 141755115 141755323 -13874797 + L1MA6 LINE L1 6081 6300 0 5 1666 1282 20 0 7 chr4 141755360 141755498 -13874622 + B1_Mus2 SINE Alu 1 138 -9 5 1666 252 0 0 0 chr4 141755498 141755526 -13874594 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1666 564 160 18 54 chr4 141755738 141755850 -13874270 - B3A SINE B2 -90 108 1 5 1666 405 0 0 0 chr4 141755891 141755936 -13874184 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1666 603 0 0 0 chr4 141755949 141756016 -13874104 + (GAA)n Simple_repeat Simple_repeat 1 67 0 6 1666 734 208 7 7 chr4 141756019 141756169 -13873951 - RSINE1 SINE B4 -13 152 3 6 1666 443 258 10 0 chr4 141756410 141756507 -13873613 + PB1D10 SINE Alu 7 104 -13 6 1666 6947 88 41 14 chr4 141757108 141758107 -13872013 + Lx3_Mus LINE L1 5976 7001 -8 6 1666 430 296 50 55 chr4 141758574 141758756 -13871364 + Charlie1a DNA MER1_type 50 230 -1225 6 1666 622 249 192 21 chr4 141758795 141759029 -13871091 + B4A SINE B4 1 274 -18 6 1666 342 0 0 0 chr4 141759220 141759258 -13870862 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1666 319 313 44 70 chr4 141759657 141759792 -13870328 + RSINE1 SINE B4 12 148 -17 6 1666 270 0 0 0 chr4 141759792 141759822 -13870298 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1666 319 313 44 70 chr4 141759822 141759844 -13870276 + RSINE1 SINE B4 149 165 0 6 1666 522 144 44 11 chr4 141759878 141759969 -13870151 - B1_Mm SINE Alu -7 140 47 6 1666 286 258 20 40 chr4 141759894 141759995 -13870125 - RLTR25A LTR ERVK -510 593 495 6 1666 262 259 239 8 chr4 141759979 141760096 -13870024 + Charlie1a DNA MER1_type 639 782 -673 6 1666 613 248 16 0 chr4 141760110 141760239 -13869881 + ID_B1 SINE B4 87 217 -7 6 1666 280 259 53 53 chr4 141760249 141760363 -13869757 + Charlie1a DNA MER1_type 774 887 -568 6 1666 357 109 0 0 chr4 141760582 141760637 -13869483 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1666 354 255 71 62 chr4 141760653 141760766 -13869354 + PB1D7 SINE Alu 1 114 -6 6 1666 498 17 0 0 chr4 141760768 141760827 -13869293 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1666 517 195 147 8 chr4 141760827 141760956 -13869164 + B1_Mur2 SINE Alu 2 148 -1 6 1666 789 128 17 8 chr4 141761104 141761222 -13868898 - PB1D9 SINE Alu 0 120 2 6 1666 226 285 147 40 chr4 141761223 141761373 -13868747 + Charlie1a DNA MER1_type 1287 1452 -3 6 1666 859 260 10 15 chr4 141761392 141761591 -13868529 + B3A SINE B2 1 198 0 6 1666 949 191 37 28 chr4 141761611 141761826 -13868294 + ID_B1 SINE B4 1 217 -7 6 1666 449 270 167 0 chr4 141761827 141761953 -13868167 + RSINE1 SINE B4 11 157 -8 6 1666 300 27 0 0 chr4 141761954 141761991 -13868129 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1666 462 329 0 0 chr4 141762093 141762230 -13867890 + L1ME4a LINE L1 5727 5863 -261 6 1666 648 248 14 0 chr4 141763382 141763527 -13866593 + B1F SINE Alu 1 147 -2 6 1666 361 66 289 0 chr4 141763712 141763788 -13866332 + ORR1D1 LTR MaLR 50 147 -227 6 1666 1968 156 98 3 chr4 141763909 141764244 -13865876 + ORR1B2 LTR MaLR 1 367 0 6 1666 390 215 85 78 chr4 141764760 141764802 -13865318 - RMER30 DNA MER1_type -59 143 100 6 1666 195 42 0 0 chr4 141764802 141764826 -13865294 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1666 248 285 87 81 chr4 141764826 141764940 -13865180 + Charlie12 DNA MER1_type 108 213 -2660 6 1666 407 323 79 38 chr4 141765484 141765751 -13864369 + Lx8 LINE L1 7161 7438 -35 6 1666 222 336 58 0 chr4 141766329 141766433 -13863687 - MIR SINE MIR -54 208 99 6 1666 567 224 39 16 chr4 141766912 141767039 -13863081 + B1F SINE Alu 3 132 -17 6 1666 399 127 0 0 chr4 141767310 141767373 -13862747 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1666 377 191 21 0 chr4 141767631 141767725 -13862395 + (TATG)n Simple_repeat Simple_repeat 1 96 0 6 1666 943 126 0 0 chr4 141767931 141768074 -13862046 + B1_Mus1 SINE Alu 6 148 0 6 1666 286 235 44 0 chr4 141768771 141768839 -13861281 + ID4_ SINE ID 1 71 -12 6 1666 194 234 0 0 chr4 141769006 141769053 -13861067 + MIR SINE MIR 75 121 -87 6 1666 229 409 79 21 chr4 141769760 141769950 -13860170 + MLT1J LTR MaLR 109 309 -203 6 1666 340 375 22 22 chr4 141769957 141770137 -13859983 - MIR SINE MIR -61 201 22 6 1666 308 282 11 212 chr4 141770789 141770978 -13859142 + RMER30 DNA MER1_type 8 158 -44 6 1666 480 194 132 104 chr4 141771059 141771203 -13858917 - B1_Mur3 SINE Alu -1 148 1 6 1666 1059 130 0 0 chr4 141772340 141772486 -13857634 - B1_Mus2 SINE Alu 0 147 2 6 1666 382 305 81 141 chr4 141774010 141774308 -13855812 - B4 SINE B4 -12 280 1 6 1666 297 307 78 8 chr4 141774373 141774501 -13855619 + MLT1K LTR MaLR 130 266 -329 6 1666 200 339 71 35 chr4 141775167 141775280 -13854840 - MIRc SINE MIR -116 152 36 6 1666 417 285 166 37 chr4 141775639 141775914 -13854206 + RMER20B LTR ERVK 125 435 -81 6 1666 181 344 31 0 chr4 141776291 141776355 -13853765 - MIRc SINE MIR -89 179 114 6 1666 201 246 30 76 chr4 141776774 141776840 -13853280 + MIR SINE MIR 10 72 -190 6 1666 507 211 204 0 chr4 141776840 141776982 -13853138 + B3A SINE B2 7 177 -21 6 1666 316 276 34 22 chr4 141777924 141778013 -13852107 + ID_B1 SINE B4 54 143 -81 6 1666 700 257 94 21 chr4 141778768 141778959 -13851161 + ID_B1 SINE B4 2 206 -18 6 1666 181 338 58 65 chr4 141779094 141779184 -13850936 + MIRc SINE MIR 2 94 -174 6 1666 1023 70 4 260 chr4 141779184 141779434 -13850686 + B2_Mm2 SINE B2 2 187 -8 6 1666 181 338 58 65 chr4 141779434 141779482 -13850638 + MIRc SINE MIR 95 139 -129 6 1666 261 0 0 0 chr4 141780912 141780941 -13849179 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1666 198 0 0 0 chr4 141781307 141781329 -13848791 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 6 1666 197 59 59 0 chr4 141781811 141781845 -13848275 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1666 573 212 78 28 chr4 141781853 141781994 -13848126 + B1_Mur1 SINE Alu 2 149 0 6 1666 2691 224 65 20 chr4 141782116 141782775 -13847345 + RCHARR1 DNA MER1_type 48 736 -238 6 1666 504 93 0 0 chr4 141782825 141782900 -13847220 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1666 23 33 0 0 chr4 141782900 141782930 -13847190 + AT_rich Low_complexity Low_complexity 1 30 0 6 1666 729 253 160 37 chr4 141783325 141783731 -13846389 + RMER5 LTR ERV1 33 488 -46 6 1666 342 305 57 0 chr4 141784523 141784628 -13845492 + PB1D10 SINE Alu 1 111 -6 6 1666 234 364 17 17 chr4 141784636 141784756 -13845364 + RSINE1 SINE B4 11 130 -35 6 1666 529 197 47 101 chr4 141785652 141785821 -13844299 + ID_B1 SINE B4 2 161 -63 6 1666 309 210 98 12 chr4 141785761 141785843 -13844277 + PB1D10 SINE Alu 21 109 -8 6 1666 523 175 35 15 chr4 141785897 141786029 -13844091 + B1_Mur1 SINE Alu 6 149 0 6 1666 210 143 0 0 chr4 141786044 141786079 -13844041 + (GGA)n Simple_repeat Simple_repeat 1 35 0 6 1666 249 108 0 0 chr4 141786100 141786137 -13843983 + (TTG)n Simple_repeat Simple_repeat 3 39 0 6 1666 313 256 70 0 chr4 141786626 141786712 -13843408 + PB1D7 SINE Alu 3 94 -26 6 1666 578 14 14 0 chr4 141786715 141786786 -13843334 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1666 423 0 0 0 chr4 141786786 141786832 -13843288 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1666 590 208 8 8 chr4 141786840 141786961 -13843159 + ID_B1 SINE B4 102 222 -2 6 1666 1197 62 0 0 chr4 141786994 141787140 -13842980 + B1_Mus1 SINE Alu 1 146 -2 6 1666 233 222 0 0 chr4 141787285 141787332 -13842788 + MIRm SINE MIR 108 153 -123 6 1666 331 301 26 59 chr4 141788632 141788784 -13841336 + ID_B1 SINE B4 78 224 0 6 1666 334 292 26 17 chr4 141788943 141789058 -13841062 - MIRb SINE MIR -90 178 63 6 1666 608 143 202 0 chr4 141789459 141789578 -13840542 + B1_Mus1 SINE Alu 5 147 -1 6 1666 263 254 0 15 chr4 141789718 141789786 -13840334 + MIRc SINE MIR 67 133 -135 6 1666 26 0 0 0 chr4 141790022 141790048 -13840072 + AT_rich Low_complexity Low_complexity 1 26 0 6 1666 1243 102 11 0 chr4 141790069 141790226 -13839894 + B2_Mm1a SINE B2 3 160 -33 6 1666 243 0 0 0 chr4 141790226 141790253 -13839867 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1666 1243 102 11 0 chr4 141790253 141790271 -13839849 + B2_Mm1a SINE B2 161 179 -14 6 1666 806 169 0 8 chr4 141790291 141790422 -13839698 + B1_Mus2 SINE Alu 5 134 -13 6 1666 210 71 0 0 chr4 141790424 141790452 -13839668 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 1666 336 256 136 23 chr4 141790483 141790608 -13839512 + ID_B1 SINE B4 73 214 -10 6 1666 314 23 0 23 chr4 141790608 141790652 -13839468 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 6 1666 286 375 80 4 chr4 141790771 141791020 -13839100 + L2a LINE L2 3157 3424 -2 6 1666 504 280 156 21 chr4 141791609 141791741 -13838379 + B3 SINE B2 2 156 -60 6 1666 324 0 0 0 chr4 141791741 141791777 -13838343 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1666 504 280 156 21 chr4 141791777 141791830 -13838290 + B3 SINE B2 157 212 -4 6 1666 918 236 77 0 chr4 141791845 141792040 -13838080 + ID_B1 SINE B4 1 210 -14 6 1666 209 231 39 0 chr4 141792040 141792092 -13838028 + GA-rich Low_complexity Low_complexity 3 56 0 6 1666 207 114 0 0 chr4 141792167 141792202 -13837918 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1666 301 122 364 20 chr4 141792202 141792301 -13837819 - B2_Mm2 SINE B2 -16 179 47 6 1666 1136 139 35 0 chr4 141792321 141792494 -13837626 - B2_Mm1t SINE B2 -14 179 1 6 1666 225 83 0 0 chr4 141792974 141793010 -13837110 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 6 1666 285 211 14 27 chr4 141793060 141793133 -13836987 - RSINE1 SINE B4 -92 73 2 6 1666 596 200 23 8 chr4 141793209 141793340 -13836780 - B1F SINE Alu -5 144 12 6 1666 307 223 131 37 chr4 141793600 141793707 -13836413 + PB1D10 SINE Alu 1 117 0 6 1666 31 26 0 0 chr4 141794805 141794843 -13835277 + GC_rich Low_complexity Low_complexity 1 38 0 6 1666 955 293 90 47 chr4 141796892 141797060 -13833060 + MTD LTR MaLR 2 168 -251 6 1666 2132 115 115 25 chr4 141797060 141797425 -13832695 + RMER10B LTR ERVL 1 398 0 6 1666 955 293 90 47 chr4 141797425 141797657 -13832463 + MTD LTR MaLR 169 419 0 6 1666 279 312 12 0 chr4 141797717 141797797 -13832323 + B1F SINE Alu 67 147 -2 6 1666 180 0 0 0 chr4 141797912 141797932 -13832188 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1666 419 286 73 32 chr4 141797938 141798061 -13832059 - B1F1 SINE Alu -16 133 6 7 1666 897 190 6 0 chr4 141798263 141798426 -13831694 + B3 SINE B2 1 164 -52 7 1666 347 41 20 0 chr4 141798426 141798475 -13831645 + (CATA)n Simple_repeat Simple_repeat 1 50 0 7 1666 644 219 5 143 chr4 141798475 141798506 -13831614 + B2_Mm2 SINE B2 152 165 -30 7 1666 1198 75 0 0 chr4 141798506 141798652 -13831468 - B1_Mus2 SINE Alu 0 147 2 7 1666 644 219 5 143 chr4 141798652 141798680 -13831440 + B2_Mm2 SINE B2 166 193 -2 7 1666 369 0 0 0 chr4 141798904 141798945 -13831175 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1666 969 172 0 0 chr4 141799420 141799600 -13830520 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1666 441 0 0 0 chr4 141799603 141799652 -13830468 + (CCCA)n Simple_repeat Simple_repeat 4 52 0 7 1666 465 19 0 0 chr4 141799652 141799705 -13830415 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 7 1666 279 54 0 0 chr4 141800365 141800402 -13829718 + (TTA)n Simple_repeat Simple_repeat 1 37 0 7 1666 261 0 0 0 chr4 141800451 141800480 -13829640 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1666 555 270 18 30 chr4 141800512 141800676 -13829444 - RSINE1 SINE B4 -2 163 2 7 1666 662 251 117 0 chr4 141800676 141800855 -13829265 - ID_B1 SINE B4 -3 221 22 7 1666 507 324 7 0 chr4 141801141 141801283 -13828837 - ID_B1 SINE B4 -2 222 80 7 1666 1185 23 15 43 chr4 141801317 141801866 -13828254 + (TG)n Simple_repeat Simple_repeat 1 533 0 7 1666 227 263 18 0 chr4 141801885 141801942 -13828178 - MLT1F2 LTR MaLR 0 505 448 7 1666 207 196 0 21 chr4 141801992 141802039 -13828081 + (GGGTG)n Simple_repeat Simple_repeat 1 46 0 7 1666 317 317 91 49 chr4 141802051 141802406 -13827714 - MLT1F2 LTR MaLR -121 439 1 7 1666 22 0 0 0 chr4 141803158 141803180 -13826940 + AT_rich Low_complexity Low_complexity 1 22 0 7 1666 306 0 0 0 chr4 141803182 141803216 -13826904 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1666 332 289 120 38 chr4 141803401 141803534 -13826586 - B1F SINE Alu -5 144 1 7 1666 460 279 39 0 chr4 141803572 141803701 -13826419 - B1_Mur1 SINE Alu -1 148 15 7 1666 262 313 74 50 chr4 141803605 141803726 -13826394 - B4 SINE B4 -88 204 81 7 1666 389 309 36 0 chr4 141803720 141803745 -13826375 - PB1D10 SINE Alu -1 116 3 7 1666 401 247 0 0 chr4 141803745 141803830 -13826290 - ID_B1 SINE B4 -56 168 84 7 1666 290 289 68 6 chr4 141804077 141804190 -13825930 - MIR SINE MIR -58 150 34 7 1666 277 159 48 0 chr4 141804693 141804756 -13825364 + B4A SINE B4 137 202 -90 7 1666 207 306 0 14 chr4 141804782 141804855 -13825265 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1666 288 356 33 20 chr4 141805000 141805152 -13824968 - MIR SINE MIR -70 192 39 7 1666 269 311 0 13 chr4 141806147 141806222 -13823898 + ID_B1 SINE B4 99 172 -52 7 1666 726 277 11 5 chr4 141806576 141806765 -13823355 + ID_B1 SINE B4 2 191 -33 7 1666 199 280 61 106 chr4 141807116 141807248 -13822872 + MER5A DNA MER1_type 1 126 -63 7 1666 596 239 15 0 chr4 141808264 141808398 -13821722 - ID_B1 SINE B4 -2 222 87 7 1666 1315 254 36 25 chr4 141808627 141808987 -13821133 + ORR1D2 LTR MaLR 1 364 -6 7 1666 249 272 0 32 chr4 141809210 141809235 -13820885 + polypyrimidine Low_complexity Low_complexity 69 93 0 7 1666 324 64 0 0 chr4 141809235 141809282 -13820838 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 7 1666 249 272 0 32 chr4 141809282 141809351 -13820769 + CT-rich Low_complexity Low_complexity 3 68 0 7 1666 1136 207 56 34 chr4 141809477 141809898 -13820222 + MT2A LTR ERVL 14 540 -61 7 1666 236 246 0 17 chr4 141809899 141809957 -13820163 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1666 351 281 17 34 chr4 141809975 141810093 -13820027 - ID_B1 SINE B4 -2 222 107 7 1666 901 192 10 41 chr4 141810140 141810335 -13819785 - B3A SINE B2 -2 196 8 7 1666 234 0 0 0 chr4 141810339 141810365 -13819755 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1666 417 211 57 19 chr4 141810369 141810475 -13819645 - RSINE1 SINE B4 -43 122 13 7 1666 677 188 72 43 chr4 141810520 141810659 -13819461 + B1_Mur2 SINE Alu 5 147 -2 7 1666 754 223 190 0 chr4 141810982 141811166 -13818954 + ID_B1 SINE B4 2 220 -4 7 1666 523 276 26 26 chr4 141811177 141811333 -13818787 + RSINE1 SINE B4 8 163 -2 7 1666 300 303 143 8 chr4 141811794 141811927 -13818193 - MIR SINE MIR -123 153 3 7 1666 394 319 8 45 chr4 141812107 141812300 -13817820 + MER102b DNA MER1_type 12 190 -151 7 1666 670 276 64 5 chr4 141812497 141812701 -13817419 + MER20 DNA MER1_type 4 219 0 7 1666 553 208 7 65 chr4 141813823 141813962 -13816158 + B1_Mur1 SINE Alu 19 149 0 7 1666 881 222 6 0 chr4 141814231 141814393 -13815727 + RSINE1 SINE B4 3 165 0 7 1666 439 208 17 0 chr4 141814393 141814513 -13815607 + (CA)n Simple_repeat Simple_repeat 1 122 0 7 1666 482 290 0 37 chr4 141814688 141814824 -13815296 + ID_B1 SINE B4 93 223 -1 7 1666 251 236 97 0 chr4 141814859 141814937 -13815183 + MTEb LTR MaLR 270 374 -5 7 1666 190 244 108 60 chr4 141815274 141815357 -13814763 - MIR SINE MIR -118 144 58 7 1666 521 283 72 0 chr4 141815361 141815499 -13814621 - ID_B1 SINE B4 -74 150 3 7 1666 194 136 0 22 chr4 141815518 141815563 -13814557 + A-rich Low_complexity Low_complexity 4 47 0 7 1666 204 330 38 19 chr4 141816401 141816506 -13813614 + L2 LINE L2 2682 2788 -631 7 1666 1778 176 207 89 chr4 141817156 141817693 -13812427 + MT2B LTR ERVL 1 600 -1 7 1666 1459 74 11 0 chr4 141818116 141818306 -13811814 - B2_Mm1t SINE B2 -1 192 1 7 1666 513 205 0 0 chr4 141818311 141818428 -13811692 + CT-rich Low_complexity Low_complexity 2 118 0 7 1666 908 252 89 33 chr4 141818494 141818765 -13811355 - B4A SINE B4 -6 286 1 7 1666 524 208 30 0 chr4 141819499 141819600 -13810520 - PB1D7 SINE Alu -13 107 4 7 1667 657 256 101 20 chr4 141820102 141820301 -13809819 + ID_B1 SINE B4 7 221 -3 7 1667 396 0 0 0 chr4 141820672 141820716 -13809404 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1667 382 217 83 42 chr4 141820735 141820855 -13809265 - RSINE1 SINE B4 -38 127 3 7 1667 1919 131 90 8 chr4 141821504 141821859 -13808261 + ORR1B1 LTR MaLR 3 386 -8 7 1667 265 267 35 43 chr4 141822602 141822766 -13807354 + MIRb SINE MIR 45 207 -55 7 1667 297 162 0 0 chr4 141822951 141823019 -13807101 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 7 1667 222 37 0 0 chr4 141824020 141824047 -13806073 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1667 581 40 13 0 chr4 141824169 141824245 -13805875 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 7 1667 1650 184 33 12 chr4 141824685 141825015 -13805105 + ORR1D1 LTR MaLR 38 374 0 7 1667 860 273 30 27 chr4 141825015 141825238 -13804882 - MTE2b LTR MaLR -81 298 86 7 1667 672 135 0 0 chr4 141826014 141826125 -13803995 + (TC)n Simple_repeat Simple_repeat 1 111 0 7 1667 471 261 134 101 chr4 141826133 141826183 -13803937 - ID_B1 SINE B4 0 224 186 7 1667 1595 42 5 0 chr4 141826183 141826374 -13803746 - B2_Mm1t SINE B2 0 193 2 7 1667 471 261 134 101 chr4 141826374 141826540 -13803580 - ID_B1 SINE B4 -39 185 1 7 1667 213 39 0 0 chr4 141826804 141826830 -13803290 + (GGA)n Simple_repeat Simple_repeat 3 28 0 7 1667 223 188 167 0 chr4 141826871 141826919 -13803201 - ID2 SINE ID -27 56 1 7 1667 520 281 132 20 chr4 141826950 141827201 -13802919 + B4A SINE B4 2 280 -12 7 1667 182 83 56 0 chr4 141827223 141827259 -13802861 + (TCTCTG)n Simple_repeat Simple_repeat 4 41 0 7 1667 1101 36 0 0 chr4 141827261 141827399 -13802721 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 1667 808 308 27 34 chr4 141827837 141828129 -13801991 - B4 SINE B4 0 292 3 7 1667 462 266 8 34 chr4 141828229 141828346 -13801774 - PB1D10 SINE Alu 0 117 4 7 1667 414 0 0 0 chr4 141828382 141828428 -13801692 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1667 582 15 0 0 chr4 141828428 141828494 -13801626 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1667 321 161 0 0 chr4 141828496 141828583 -13801537 + GA-rich Low_complexity Low_complexity 94 180 0 7 1667 395 0 0 162 chr4 141828585 141828950 -13801170 + (CAGAG)n Simple_repeat Simple_repeat 1 306 0 7 1667 208 0 0 160 chr4 141828953 141829134 -13800986 + (CGAGG)n Simple_repeat Simple_repeat 2 153 0 7 1667 277 306 12 12 chr4 141829166 141829252 -13800868 - B3A SINE B2 -104 94 9 7 1667 863 196 81 52 chr4 141831246 141831456 -13798664 + B3 SINE B2 1 216 0 7 1667 299 277 10 41 chr4 141831485 141831583 -13798537 + Charlie19a DNA Charlie 92 186 -200 7 1667 993 231 14 9 chr4 141831766 141831989 -13798131 - ID_B1 SINE B4 0 224 1 7 1667 280 0 0 48 chr4 141831996 141832038 -13798082 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1667 878 27 9 0 chr4 141832038 141832150 -13797970 - B1_Mm SINE Alu -10 137 25 7 1667 664 269 18 60 chr4 141832336 141832454 -13797666 - RSINE1 SINE B4 -2 163 51 7 1667 1463 64 11 0 chr4 141832454 141832642 -13797478 + B2_Mm1a SINE B2 1 190 -3 7 1667 664 269 18 60 chr4 141832642 141832689 -13797431 - RSINE1 SINE B4 -115 50 5 7 1667 261 0 0 0 chr4 141832993 141833022 -13797098 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1667 243 0 0 0 chr4 141833241 141833268 -13796852 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1667 230 323 93 30 chr4 141833397 141833633 -13796487 - L2b LINE L2 -168 3207 2957 7 1667 24 0 0 0 chr4 141834060 141834084 -13796036 + GC_rich Low_complexity Low_complexity 1 24 0 7 1667 241 310 99 10 chr4 141834097 141834198 -13795922 + MER5A1 DNA MER1_type 6 115 -51 8 1667 797 263 37 40 chr4 141834191 141834464 -13795656 - B4 SINE B4 0 292 21 8 1667 239 305 0 89 chr4 141834536 141834626 -13795494 + ID4 SINE ID 2 83 0 8 1667 438 20 0 0 chr4 141834721 141834772 -13795348 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1667 360 264 106 26 chr4 141834811 141834924 -13795196 - RSINE1 SINE B4 -29 136 15 8 1667 358 299 12 8 chr4 141835000 141835123 -13794997 + MIRb SINE MIR 59 188 -80 8 1667 276 423 12 12 chr4 141835757 141835922 -13794198 + MIR SINE MIR 86 250 -12 8 1667 435 185 0 0 chr4 141836229 141836321 -13793799 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1667 620 307 6 12 chr4 141836321 141836486 -13793634 - RSINE1 SINE B4 0 165 2 8 1667 285 51 0 0 chr4 141836630 141836669 -13793451 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 8 1667 367 285 151 65 chr4 141836741 141836940 -13793180 - B4A SINE B4 -75 217 2 8 1667 740 164 5 18 chr4 141837947 141838176 -13791944 + (CA)n Simple_repeat Simple_repeat 1 225 0 8 1667 536 225 45 0 chr4 141838270 141838381 -13791739 - ID_B1 SINE B4 -31 193 78 8 1667 1952 107 94 9 chr4 141838703 141839033 -13791087 + ORR1B2 LTR MaLR 2 359 -8 8 1667 279 0 0 0 chr4 141839116 141839147 -13790973 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1667 251 314 33 99 chr4 141839412 141839564 -13790556 - MIR SINE MIR -44 218 77 8 1667 854 182 0 26 chr4 141840165 141840317 -13789803 + B1_Mur4 SINE Alu 3 150 0 8 1667 1160 239 69 24 chr4 141840332 141840623 -13789497 + MTEa LTR MaLR 1 304 -75 8 1667 324 235 104 38 chr4 141840759 141840865 -13789255 + MER20 DNA MER1_type 104 216 -3 8 1667 1807 130 115 3 chr4 141841285 141841608 -13788512 - ORR1B2 LTR MaLR -2 365 7 8 1667 378 187 139 9 chr4 141841637 141841745 -13788375 - ORR1E LTR MaLR -235 124 3 8 1667 1186 227 14 29 chr4 141842212 141842493 -13787627 + MTE2b LTR MaLR 99 375 -4 8 1667 829 168 6 6 chr4 141844243 141844423 -13785697 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 1667 2528 122 39 31 chr4 141844478 141844935 -13785185 - RMER6B LTR ERVK 0 461 1 8 1667 273 208 153 0 chr4 141845008 141845080 -13785040 + L2 LINE L2 1994 2076 -1343 8 1667 242 315 45 0 chr4 141845218 141845307 -13784813 + L2 LINE L2 2797 2889 -530 8 1667 2364 137 29 29 chr4 141845477 141845898 -13784222 - MTC LTR MaLR 0 421 1 8 1667 624 27 0 0 chr4 141846015 141846089 -13784031 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 8 1667 266 266 40 25 chr4 141846192 141846392 -13783728 + (TCCA)n Simple_repeat Simple_repeat 1 202 0 8 1667 269 240 10 0 chr4 141846431 141846527 -13783593 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 8 1667 300 217 245 10 chr4 141846924 141847055 -13783065 - MIRc SINE MIR -83 185 19 8 1667 417 70 0 0 chr4 141847304 141847361 -13782759 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1667 330 328 14 68 chr4 141849132 141849279 -13780841 + B4 SINE B4 28 166 -126 8 1667 317 295 9 0 chr4 141849361 141849601 -13780519 + (CA)n Simple_repeat Simple_repeat 1 242 0 8 1667 722 257 17 0 chr4 141849682 141849861 -13780259 - B3A SINE B2 -16 182 1 8 1667 25 0 0 0 chr4 141849870 141849895 -13780225 + AT_rich Low_complexity Low_complexity 1 25 0 8 1667 3354 25 2 0 chr4 141850732 141851127 -13778993 - MTA_Mm LTR MaLR 0 396 1 8 1667 903 36 0 0 chr4 141851256 141851367 -13778753 + (TCCCC)n Simple_repeat Simple_repeat 1 111 0 8 1667 290 316 11 0 chr4 141851373 141851468 -13778652 - PB1D10 SINE Alu -17 100 5 8 1667 244 332 119 100 chr4 141852042 141852413 -13777707 - MLT1B LTR MaLR -7 383 6 8 1667 332 261 61 26 chr4 141853008 141853122 -13776998 - PB1D7 SINE Alu -2 118 1 8 1667 455 331 113 49 chr4 141853584 141853911 -13776209 + MLT1A LTR MaLR 27 374 0 8 1667 226 271 0 0 chr4 141854041 141854089 -13776031 - B1_Mur1 SINE Alu -27 122 75 8 1667 449 319 21 0 chr4 141854089 141854230 -13775890 + ID_B1 SINE B4 80 223 -1 8 1667 568 257 15 7 chr4 141854243 141854380 -13775740 + RSINE1 SINE B4 11 148 -17 8 1667 318 50 0 0 chr4 141854393 141854433 -13775687 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 8 1667 707 204 24 47 chr4 141854553 141854723 -13775397 - ID_B1 SINE B4 -27 197 32 8 1667 246 62 0 0 chr4 141855320 141855352 -13774768 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1667 294 278 189 49 chr4 141855370 141855555 -13774565 - B4A SINE B4 0 292 82 8 1667 499 288 185 25 chr4 141855579 141855860 -13774260 - Lx8 LINE L1 -2 7471 7146 8 1667 365 207 73 0 chr4 141855864 141855946 -13774174 - B4A SINE B4 -200 92 5 8 1667 470 217 150 36 chr4 141855961 141856128 -13773992 + MTEb LTR MaLR 136 321 -58 8 1667 311 307 59 0 chr4 141856263 141856364 -13773756 + MTEa LTR MaLR 1 107 -272 8 1667 2124 143 0 34 chr4 141856344 141856728 -13773392 + RMER10B LTR ERVL 17 387 -11 8 1667 703 288 49 16 chr4 141856734 141856981 -13773139 + MTEa LTR MaLR 94 348 -31 8 1667 317 269 115 0 chr4 141857485 141857589 -13772531 - B4 SINE B4 -166 126 11 8 1667 274 248 25 139 chr4 141858868 141858990 -13771130 - MER5A1 DNA MER1_type -19 147 40 8 1667 675 94 0 0 chr4 141859088 141859184 -13770936 + (TCCC)n Simple_repeat Simple_repeat 3 98 0 8 1667 757 103 0 0 chr4 141859225 141859342 -13770778 - B1_Mus1 SINE Alu -21 127 11 8 1667 377 231 80 29 chr4 141859342 141859354 -13770766 - ID_B1 SINE B4 -1 170 79 8 1667 318 50 0 0 chr4 141860576 141860616 -13769504 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1667 433 341 47 35 chr4 141860653 141860823 -13769297 + MIRb SINE MIR 28 199 -69 8 1667 479 138 11 0 chr4 141860990 141861077 -13769043 + ZP3AR Satellite Satellite 48 135 -77 8 1667 321 93 0 0 chr4 141861110 141861164 -13768956 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1667 203 214 136 11 chr4 141862464 141862554 -13767566 - MIRc SINE MIR -105 163 58 8 1667 230 218 0 35 chr4 141862758 141862815 -13767305 - MIRm SINE MIR -14 262 208 8 1667 343 279 12 11 chr4 141863473 141863598 -13766522 + MIRb SINE MIR 33 158 -118 8 1667 949 132 11 11 chr4 141863873 141864049 -13766071 + CT-rich Low_complexity Low_complexity 3 178 0 8 1667 626 225 176 0 chr4 141864070 141864257 -13765863 - ID_B1 SINE B4 -3 221 2 8 1667 237 277 48 12 chr4 141864584 141864668 -13765452 + LTR16B2 LTR ERVL 129 215 -247 8 1667 330 219 0 28 chr4 141865071 141865179 -13764941 + GA-rich Low_complexity Low_complexity 2 106 0 8 1667 353 355 0 0 chr4 141865192 141865313 -13764807 + GA-rich Low_complexity Low_complexity 3 123 0 8 1667 283 287 100 42 chr4 141865347 141865467 -13764653 - MIRc SINE MIR -42 226 100 8 1667 416 248 78 45 chr4 141865652 141865837 -13764283 - ORR1D1 LTR MaLR 0 379 201 8 1667 262 311 57 78 chr4 141865993 141866190 -13763930 + HAL1 LINE L1 2232 2422 -85 8 1667 246 32 0 0 chr4 141866190 141866221 -13763899 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1667 262 311 57 78 chr4 141866221 141866305 -13763815 + HAL1 LINE L1 2423 2506 -1 8 1667 259 368 57 82 chr4 141866641 141866780 -13763340 + MTEa LTR MaLR 2 144 -215 8 1667 482 0 17 0 chr4 141866780 141866838 -13763282 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1667 310 319 40 62 chr4 141866838 141867067 -13763053 + MTEa LTR MaLR 145 379 0 8 1667 195 42 0 0 chr4 141867191 141867215 -13762905 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 8 1667 210 71 0 0 chr4 141867704 141867732 -13762388 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1667 1097 108 48 21 chr4 141867920 141868109 -13762011 - B2_Mm2 SINE B2 -1 194 1 8 1667 273 352 11 11 chr4 141868112 141868201 -13761919 - PB1D10 SINE Alu -1 116 28 8 1667 481 338 0 0 chr4 141868281 141868423 -13761697 - RSINE1 SINE B4 -13 152 11 8 1667 760 230 28 22 chr4 141868460 141868642 -13761478 + B3A SINE B2 1 183 -15 8 1667 492 18 0 0 chr4 141868668 141868725 -13761395 + (TAAAA)n Simple_repeat Simple_repeat 5 61 0 8 1667 360 0 0 0 chr4 141868898 141868938 -13761182 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1667 335 276 28 22 chr4 141868943 141869061 -13761059 - PB1D10 SINE Alu -30 120 5 8 1667 342 115 0 0 chr4 141869090 141869142 -13760978 + (TCC)n Simple_repeat Simple_repeat 2 53 0 8 1667 233 330 0 76 chr4 141869609 141869740 -13760380 + MER117 DNA MER1_type 77 197 0 8 1667 234 301 0 0 chr4 141870837 141870910 -13759210 + ID2 SINE ID 2 74 -9 8 1667 210 37 0 0 chr4 141871632 141871659 -13758461 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1667 513 84 0 0 chr4 141871785 141871856 -13758264 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 8 1667 494 206 4 4 chr4 141871860 141872108 -13758012 + GA-rich Low_complexity Low_complexity 1 248 0 8 1667 312 306 204 25 chr4 141872722 141872923 -13757197 - MLT1B LTR MaLR -22 368 132 8 1667 1527 200 189 86 chr4 141872924 141873400 -13756720 - MT2A LTR ERVL 0 533 9 8 1667 250 274 117 58 chr4 141873394 141873470 -13756650 - MLT1B LTR MaLR -248 142 64 8 1667 189 0 0 0 chr4 141873470 141873491 -13756629 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1667 250 274 117 58 chr4 141873491 141873534 -13756586 - MLT1B LTR MaLR -327 63 17 8 1667 275 261 19 6 chr4 141874651 141874813 -13755307 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 8 1667 348 310 8 8 chr4 141874844 141874974 -13755146 + (TGGA)n Simple_repeat Simple_repeat 4 133 0 8 1667 470 83 14 0 chr4 141875013 141875085 -13755035 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 8 1667 779 297 59 25 chr4 141875110 141875434 -13754686 - MLT2C1 LTR ERVL -56 341 7 8 1667 186 133 0 0 chr4 141875812 141875842 -13754278 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 8 1667 989 262 67 60 chr4 141876224 141876776 -13753344 + L1MA6 LINE L1 5724 6279 -21 8 1667 322 271 16 33 chr4 141876795 141876917 -13753203 - B4A SINE B4 0 292 173 8 1667 347 296 0 0 chr4 141876967 141877048 -13753072 - B4A SINE B4 -211 81 1 8 1667 198 0 0 0 chr4 141877082 141877104 -13753016 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 8 1667 680 290 125 16 chr4 141877709 141877965 -13752155 - B4A SINE B4 -8 284 1 8 1667 430 211 56 28 chr4 141878241 141878348 -13751772 - PB1D10 SINE Alu -1 116 7 8 1667 303 301 37 80 chr4 141878542 141878730 -13751390 + MLT1E1A LTR MaLR 455 634 -46 8 1667 1061 242 24 24 chr4 141879488 141879776 -13750344 + B4 SINE B4 1 288 -4 9 1667 396 103 0 0 chr4 141879858 141879916 -13750204 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1667 378 331 61 0 chr4 141880836 141880984 -13749136 - MLT1H1 LTR MaLR -398 157 1 9 1667 182 328 101 8 chr4 141880985 141881114 -13749006 - MIRc SINE MIR -121 147 7 9 1667 195 42 0 0 chr4 141881952 141881976 -13748144 + (CAA)n Simple_repeat Simple_repeat 2 25 0 9 1667 325 319 102 61 chr4 141882980 141883177 -13746943 - B4 SINE B4 -37 255 51 9 1667 254 338 0 0 chr4 141883347 141883415 -13746705 - RMER30 DNA MER1_type -2 200 133 9 1667 597 310 69 47 chr4 141883657 141883931 -13746189 + B4 SINE B4 2 281 -11 9 1667 1138 225 12 0 chr4 141884767 141885011 -13745109 - MTEb LTR MaLR 0 379 133 9 1667 242 261 0 0 chr4 141885130 141885195 -13744925 - L1MB7 LINE L1 -43 6141 6077 9 1667 695 238 156 5 chr4 141885198 141885384 -13744736 - ID_B1 SINE B4 -8 216 3 9 1667 498 17 0 0 chr4 141885387 141885446 -13744674 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1667 520 244 216 4 chr4 141885454 141885713 -13744407 - L1MB7 LINE L1 -158 6026 5713 9 1667 305 48 0 0 chr4 141886053 141886095 -13744025 + RLTR10B2 LTR ERVK 1 42 -250 9 1667 1988 103 25 50 chr4 141886117 141886474 -13743646 + RLTR10B2 LTR ERVK 18 365 0 9 1667 777 205 134 5 chr4 141886608 141886794 -13743326 + B3 SINE B2 1 210 -6 9 1667 416 125 0 53 chr4 141887364 141887440 -13742680 - MLT1I LTR MaLR 0 411 340 9 1667 217 395 42 0 chr4 141887747 141887866 -13742254 + MIR SINE MIR 23 146 -116 9 1667 481 184 10 30 chr4 141888408 141888509 -13741611 - PB1D10 SINE Alu -18 99 1 9 1667 252 287 109 34 chr4 141889176 141889295 -13740825 - L2b LINE L2 -13 3362 3235 9 1667 966 228 14 18 chr4 141889397 141889616 -13740504 + ID_B1 SINE B4 7 224 0 9 1667 347 364 53 35 chr4 141890469 141890697 -13739423 - MIR SINE MIR -19 243 12 9 1667 465 125 0 0 chr4 141891185 141891257 -13738863 - B2_Mm2 SINE B2 -110 85 14 9 1667 229 49 73 0 chr4 141891257 141891298 -13738822 + B2_Mm2 SINE B2 137 180 -15 9 1667 207 0 0 0 chr4 141891298 141891321 -13738799 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1667 387 306 96 63 chr4 141892006 141892309 -13737811 - ORR1E LTR MaLR -2 357 45 9 1667 915 75 30 18 chr4 141894096 141894260 -13735860 + (TCCC)n Simple_repeat Simple_repeat 4 169 0 9 1667 760 197 0 7 chr4 141894260 141894395 -13735725 - ID_B1 SINE B4 -8 216 82 9 1667 886 230 84 81 chr4 141894541 141894863 -13735257 - RMER20B LTR ERVK -214 413 91 9 1667 821 258 0 48 chr4 141895506 141895714 -13734406 + B3A SINE B2 1 198 0 9 1667 253 273 45 11 chr4 141895732 141895821 -13734299 - BC1_Mm scRNA scRNA -47 105 14 9 1667 252 0 0 0 chr4 141896585 141896613 -13733507 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1667 208 150 25 0 chr4 141896829 141896869 -13733251 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1667 480 324 65 20 chr4 141896945 141897204 -13732916 - B4A SINE B4 0 292 5 9 1667 200 264 51 71 chr4 141898051 141898149 -13731971 - MIR SINE MIR -170 98 3 9 1667 524 279 0 0 chr4 141898193 141898335 -13731785 + B1F1 SINE Alu 1 142 -7 9 1667 297 315 53 7 chr4 141899206 141899356 -13730764 - RSINE1 SINE B4 -8 157 1 9 1667 279 0 0 0 chr4 141899756 141899787 -13730333 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1667 978 251 59 26 chr4 141901084 141901354 -13728766 - B4 SINE B4 -13 279 1 9 1667 733 235 0 0 chr4 141901377 141901526 -13728594 - B1_Mur3 SINE Alu 0 149 1 9 1667 333 162 45 9 chr4 141901526 141901638 -13728482 + CT-rich Low_complexity Low_complexity 2 117 0 9 1667 377 231 0 0 chr4 141901695 141901773 -13728347 - ID SINE ID -145 79 2 9 1667 700 239 7 7 chr4 141902588 141902731 -13727389 - RSINE1 SINE B4 -21 144 2 9 1667 468 123 0 0 chr4 141902798 141902871 -13727249 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1667 350 253 0 152 chr4 141902876 141902988 -13727132 - PB1D10 SINE Alu -11 106 12 9 1667 320 320 120 24 chr4 141902988 141903001 -13727119 - ID_B1 SINE B4 -11 213 77 9 1667 269 229 0 62 chr4 141903024 141903089 -13727031 - B1F SINE Alu -56 93 33 9 1667 344 305 27 34 chr4 141903754 141903900 -13726220 - MIR SINE MIR -47 215 71 9 1667 198 0 0 0 chr4 141904565 141904587 -13725533 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1667 180 77 0 0 chr4 141904874 141904900 -13725220 + (C)n Simple_repeat Simple_repeat 1 26 0 9 1667 245 279 140 39 chr4 141905079 141905258 -13724862 + MLT1G1 LTR MaLR 4 200 -379 9 1667 1410 184 189 6 chr4 141905340 141905607 -13724513 + MTD LTR MaLR 19 349 -70 9 1667 1918 144 8 87 chr4 141905607 141905929 -13724191 - RLTR15 LTR ERVK -1 358 62 9 1667 904 231 24 5 chr4 141905929 141906138 -13723982 - B3 SINE B2 0 216 4 9 1667 1918 144 8 87 chr4 141906138 141906204 -13723916 - RLTR15 LTR ERVK -298 61 1 9 1667 1410 184 189 6 chr4 141906204 141906275 -13723845 + MTD LTR MaLR 350 419 0 9 1667 506 271 20 40 chr4 141906525 141906675 -13723445 + RSINE1 SINE B4 9 155 -10 9 1667 584 226 32 0 chr4 141906773 141906897 -13723223 - B1_Mur1 SINE Alu -9 140 13 9 1667 1271 286 72 25 chr4 141907143 141907616 -13722504 + RMER5 LTR ERV1 33 527 -7 9 1667 221 140 0 23 chr4 141908953 141908997 -13721123 + T-rich Low_complexity Low_complexity 3 45 0 9 1667 197 364 64 27 chr4 141909587 141909697 -13720423 - L2a LINE L2 0 3426 3313 9 1667 974 129 6 0 chr4 141910423 141910586 -13719534 + (TCC)n Simple_repeat Simple_repeat 3 166 0 9 1667 371 277 32 0 chr4 141910606 141910700 -13719420 - B1F SINE Alu -33 116 20 9 1667 833 255 107 15 chr4 141910819 141911145 -13718975 + ORR1E LTR MaLR 4 359 0 9 1667 259 343 127 0 chr4 141911255 141911421 -13718699 - MIR SINE MIR -68 194 8 9 1667 369 0 0 0 chr4 141912001 141912042 -13718078 + (TC)n Simple_repeat Simple_repeat 2 42 0 9 1667 365 0 22 0 chr4 141912042 141912086 -13718034 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1667 194 246 66 0 chr4 141912108 141912169 -13717951 - MIRm SINE MIR -6 270 206 9 1667 802 281 15 10 chr4 141912540 141912738 -13717382 + MER58A DNA MER1_type 2 200 -24 9 1667 1111 125 172 0 chr4 141912772 141912964 -13717156 + URR1A DNA MER1_type 2 226 0 9 1667 654 270 0 32 chr4 141913020 141913177 -13716943 + RSINE1 SINE B4 3 154 -11 9 1667 288 0 0 0 chr4 141913247 141913279 -13716841 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1667 280 185 169 0 chr4 141913919 141913984 -13716136 + B3A SINE B2 4 79 -119 9 1667 256 256 149 11 chr4 141913984 141914006 -13716114 + B4A SINE B4 4 102 -190 9 1667 267 315 0 0 chr4 141914006 141914098 -13716022 + (TG)n Simple_repeat Simple_repeat 1 92 0 9 1667 474 301 30 49 chr4 141914119 141914283 -13715837 + B4A SINE B4 132 292 0 9 1667 245 128 21 0 chr4 141914303 141914350 -13715770 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1667 597 196 0 0 chr4 141914466 141914573 -13715547 + PB1D9 SINE Alu 2 108 -12 9 1667 477 0 0 0 chr4 141914573 141914626 -13715494 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 9 1667 427 298 16 9 chr4 141915266 141915408 -13714712 + B4 SINE B4 1 141 -151 9 1667 905 244 102 8 chr4 141915960 141916224 -13713896 + B4 SINE B4 2 290 -2 9 1667 902 123 0 11 chr4 141916226 141916407 -13713713 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1667 268 333 35 0 chr4 141916416 141916530 -13713590 - MIRc SINE MIR -104 164 47 9 1667 262 259 376 21 chr4 141917279 141917420 -13712700 - ID_B1 SINE B4 0 224 34 9 1667 931 248 14 5 chr4 141917795 141918014 -13712106 + ID_B1 SINE B4 1 221 -3 9 1667 664 267 100 22 chr4 141918691 141918921 -13711199 + B4A SINE B4 1 248 -44 9 1667 260 208 0 0 chr4 141919032 141919080 -13711040 + MER117 DNA MER1_type 109 156 -41 9 1667 388 395 75 0 chr4 141919407 141919554 -13710566 + MTE2b LTR MaLR 3 160 -219 9 1667 1138 200 8 34 chr4 141919601 141919839 -13710281 + MTE2b LTR MaLR 148 379 0 9 1667 487 227 45 0 chr4 141920595 141920705 -13709415 - PB1D7 SINE Alu 0 120 6 9 1667 465 19 0 0 chr4 141920717 141920771 -13709349 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1667 468 290 150 36 chr4 141920776 141921023 -13709097 - B4A SINE B4 -15 277 3 9 1667 433 112 0 12 chr4 141921280 141921361 -13708759 - Lx LINE L1 -14 6640 6561 9 1667 884 209 40 10 chr4 141921390 141921588 -13708532 - B3 SINE B2 0 216 13 9 1667 427 303 30 0 chr4 141921770 141921902 -13708218 + ID_B1 SINE B4 89 224 0 9 1667 1003 138 152 15 chr4 141921966 141922164 -13707956 + URR1B DNA MER1_type 1 225 0 9 1667 211 259 24 0 chr4 141922225 141922310 -13707810 + GA-rich Low_complexity Low_complexity 4 90 0 9 1667 1815 149 53 24 chr4 141922595 141922932 -13707188 + MT2A LTR ERVL 110 456 -77 9 1667 378 0 0 0 chr4 141922932 141922974 -13707146 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1667 289 268 7 115 chr4 141923615 141923754 -13706366 + MER117 DNA MER1_type 74 197 0 9 1667 1579 241 21 39 chr4 141924160 141924545 -13705575 - MTEa LTR MaLR -1 378 1 9 1667 1141 105 71 6 chr4 141925657 141925839 -13704281 - B2_Mm2 SINE B2 -1 194 1 9 1667 305 336 0 62 chr4 141925924 141926070 -13704050 + HAL1-2a_MD LINE L1 2356 2492 -532 9 1667 935 174 11 6 chr4 141926074 141926253 -13703867 - ORR1D1 LTR MaLR -194 180 1 9 1667 771 304 51 73 chr4 141926255 141926607 -13703513 + MT2A LTR ERVL 135 478 -55 9 1667 1362 216 143 144 chr4 141926607 141927126 -13702994 - MT2B LTR ERVL -2 599 14 9 1667 1825 201 68 84 chr4 141927410 141927850 -13702270 + Lx5 LINE L1 6617 7049 -1 1 1667 510 211 1 0 chr4 141927896 141928011 -13702109 - B1_Mur1 SINE Alu 0 120 5 1 1667 292 252 0 123 chr4 141927910 141928032 -13702088 - MT2B LTR ERVL -343 258 152 9 1667 330 246 124 25 chr4 141928661 141928689 -13701431 + B1F SINE Alu 13 144 -4 1 1667 428 228 43 0 chr4 141928689 141928781 -13701339 + ID_B1 SINE B4 125 220 -4 1 1667 503 332 162 45 chr4 141928791 141929192 -13700928 + MLT1E3 LTR MaLR 207 654 0 1 1667 259 145 0 61 chr4 141929634 141929700 -13700420 + CT-rich Low_complexity Low_complexity 2 63 0 1 1667 213 245 38 0 chr4 141929733 141929786 -13700334 - ID4 SINE ID -25 58 4 1 1667 728 257 53 10 chr4 141929877 141930085 -13700035 - ID_B1 SINE B4 -7 217 1 1 1667 464 228 78 9 chr4 141930957 141931072 -13699048 + RSINE1 SINE B4 2 124 -41 1 1667 453 50 0 0 chr4 141931072 141931132 -13698988 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1667 872 269 78 19 chr4 141931651 141931909 -13698211 - B4 SINE B4 -17 275 3 1 1667 584 279 56 47 chr4 141933215 141933429 -13696691 + B3 SINE B2 1 216 0 1 1667 228 130 0 0 chr4 141933429 141933475 -13696645 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1667 309 154 0 63 chr4 141933757 141933868 -13696252 + CT-rich Low_complexity Low_complexity 4 107 0 1 1667 534 13 40 0 chr4 141934259 141934334 -13695786 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1667 288 0 0 0 chr4 141935097 141935129 -13694991 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1667 857 223 8 33 chr4 141935147 141935342 -13694778 - ID_B1 SINE B4 -45 247 51 1 1667 1080 88 0 7 chr4 141935609 141935757 -13694363 - B1_Mus2 SINE Alu 0 147 1 1 1667 534 212 35 93 chr4 141935918 141936090 -13694030 - RSINE1 SINE B4 0 165 4 1 1667 340 224 81 10 chr4 141936090 141936189 -13693931 - L1MA5 LINE L1 -470 5830 5725 1 1667 192 97 0 0 chr4 141936613 141936644 -13693476 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1667 879 244 55 33 chr4 141936657 141936932 -13693188 - B4A SINE B4 -8 284 4 1 1667 296 256 29 136 chr4 141937300 141937440 -13692680 - B4A SINE B4 -120 172 48 1 1667 285 75 0 0 chr4 141937716 141937756 -13692364 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1667 622 161 34 0 chr4 141937756 141937874 -13692246 + ID_B1 SINE B4 99 220 -4 1 1667 1121 43 111 0 chr4 141938041 141938203 -13691917 - B2_Mm2 SINE B2 -14 181 2 1 1667 812 320 7 64 chr4 141938287 141938584 -13691536 + B4A SINE B4 13 292 0 1 1667 2181 210 99 10 chr4 141940461 141940965 -13689155 + RMER15 LTR ERVL 27 575 0 1 1667 1503 212 29 57 chr4 141940980 141941365 -13688755 + MTE2b LTR MaLR 5 378 -1 1 1667 1366 225 61 92 chr4 141943671 141943849 -13686271 + MTEa LTR MaLR 1 171 -208 1 1667 1188 68 0 7 chr4 141943849 141943996 -13686124 + B1_Mm SINE Alu 1 146 -1 1 1667 1366 225 61 92 chr4 141943996 141944018 -13686102 + MTEa LTR MaLR 172 178 -201 1 1667 1333 105 11 0 chr4 141944018 141944208 -13685912 + B2_Mm1t SINE B2 1 192 -1 1 1667 1366 225 61 92 chr4 141944208 141944397 -13685723 + MTEa LTR MaLR 179 379 0 1 1667 342 0 0 0 chr4 141944916 141944954 -13685166 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1667 376 303 130 102 chr4 141945962 141946285 -13683835 - ORR1E LTR MaLR -25 334 3 1 1667 181 299 141 20 chr4 141946290 141946389 -13683731 + MIRb SINE MIR 42 152 -116 1 1667 480 275 38 42 chr4 141946947 141947150 -13682970 + MLT1E LTR MaLR 388 596 -28 1 1667 527 270 79 57 chr4 141947380 141947595 -13682525 + MIR SINE MIR 55 259 -3 1 1667 818 149 0 7 chr4 141947610 141947759 -13682361 + GA-rich Low_complexity Low_complexity 3 150 0 1 1667 550 274 7 7 chr4 141948465 141948612 -13681508 + B1F SINE Alu 1 147 -2 1 1667 528 16 0 0 chr4 141949681 141949742 -13680378 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1667 474 18 0 0 chr4 141949822 141949877 -13680243 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1667 384 317 85 18 chr4 141950089 141950253 -13679867 + MLT1H LTR MaLR 114 288 -261 1 1667 306 275 85 92 chr4 141950440 141950697 -13679423 - ORR1E LTR MaLR -73 301 69 1 208 1109 272 21 30 chr4 141950831 141951161 -13678959 - ORR1E LTR MaLR -30 329 3 1 1668 938 255 72 29 chr4 141951212 141951308 -13678812 + B4 SINE B4 1 96 -196 1 1668 1139 208 14 0 chr4 141951308 141951520 -13678600 + B3 SINE B2 2 216 0 1 1668 938 255 72 29 chr4 141951520 141951702 -13678418 + B4 SINE B4 97 290 -2 1 1668 546 57 0 0 chr4 141951752 141951822 -13678298 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1668 546 196 58 10 chr4 141952288 141952391 -13677729 - ID_B1 SINE B4 -8 216 109 1 1668 264 252 107 116 chr4 141952391 141952409 -13677711 - PB1 SINE Alu -7 120 1 1 1668 982 223 171 34 chr4 141952782 141953075 -13677045 - MTE2b LTR MaLR 0 379 47 1 1668 554 246 156 19 chr4 141953058 141953269 -13676851 - MLT1F2 LTR MaLR -263 297 58 1 1668 269 193 53 0 chr4 141953720 141953777 -13676343 + G-rich Low_complexity Low_complexity 2 61 0 1 1668 810 251 40 136 chr4 141954135 141954551 -13675569 + MTEa LTR MaLR 1 375 -4 1 1668 299 297 0 26 chr4 141954614 141954690 -13675430 - ID4 SINE ID -2 81 8 1 1668 396 205 209 54 chr4 141954696 141954825 -13675295 + B1F SINE Alu 1 149 0 1 1668 387 171 0 0 chr4 141954880 141954956 -13675164 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1668 942 263 195 19 chr4 141954994 141955307 -13674813 + RMER5 LTR ERV1 153 520 -14 1 1668 759 210 29 1 chr4 141955990 141956147 -13673973 + B3A SINE B2 2 160 -56 1 1668 928 259 109 13 chr4 141956591 141956904 -13673216 + MLT1B LTR MaLR 29 371 -19 1 1668 1284 273 19 97 chr4 141957153 141957629 -13672491 + MTE2a LTR MaLR 1 405 -14 1 1668 803 218 7 0 chr4 141958609 141958756 -13671364 - B1_Mur1 SINE Alu 0 149 2 1 1668 258 177 32 58 chr4 141958987 141959070 -13671050 + L2a LINE L2 3027 3111 -315 1 1668 365 289 108 8 chr4 141959076 141959205 -13670915 + MER63A DNA AcHobo 31 172 -38 1 1668 227 35 0 0 chr4 141959431 141959460 -13670660 + L1_Mur3 LINE L1 3441 3469 -2411 1 1668 619 155 101 0 chr4 141959451 141959580 -13670540 + Lx7 LINE L1 7555 7696 0 1 1668 307 300 88 20 chr4 141959612 141959714 -13670406 - B4 SINE B4 -181 111 3 1 1668 884 258 83 162 chr4 141960494 141960753 -13669367 + MTE2b LTR MaLR 1 201 -178 1 1668 814 252 19 0 chr4 141960753 141960908 -13669212 - RSINE1 SINE B4 -4 161 4 1 1668 884 258 83 162 chr4 141960908 141961055 -13669065 + MTE2b LTR MaLR 202 375 -4 1 1668 1186 252 108 28 chr4 141961304 141961677 -13668443 - MTD LTR MaLR -15 404 19 1 1668 2792 162 27 36 chr4 141962236 141962762 -13667358 + RMER5 LTR ERV1 1 521 -13 1 1668 459 0 0 0 chr4 141963044 141963095 -13667025 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1668 376 258 21 31 chr4 141963276 141963372 -13666748 - RSINE1 SINE B4 -69 96 2 1 1668 198 336 104 48 chr4 141963801 141963926 -13666194 + L2b LINE L2 3244 3375 0 1 1668 521 137 6 64 chr4 141964956 141965112 -13665008 + (CA)n Simple_repeat Simple_repeat 1 147 0 1 1668 224 321 48 111 chr4 141967740 141967778 -13662342 - B2_Mm2 SINE B2 0 195 161 1 1668 351 0 0 0 chr4 141967778 141967817 -13662303 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1668 321 26 0 0 chr4 141967817 141967854 -13662266 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1668 399 228 162 86 chr4 141967854 141968021 -13662099 - B3 SINE B2 -38 178 2 1 1668 630 260 99 10 chr4 141969164 141969366 -13660754 + ID_B1 SINE B4 3 222 -2 1 1668 452 86 0 14 chr4 141969366 141969437 -13660683 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1668 232 292 27 27 chr4 141969439 141969513 -13660607 + MLT1D LTR MaLR 405 478 -27 1 1668 452 335 122 48 chr4 141970152 141970208 -13659912 - B4A SINE B4 0 292 242 1 1668 699 35 0 0 chr4 141970208 141970294 -13659826 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1668 510 260 76 35 chr4 141970294 141970507 -13659613 - B4 SINE B4 -51 241 3 1 1668 762 273 0 53 chr4 141971577 141971610 -13658510 - B3A SINE B2 0 198 167 1 1668 450 0 0 0 chr4 141971610 141971660 -13658460 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1668 762 273 0 53 chr4 141971660 141971835 -13658285 - B3A SINE B2 -32 166 1 1 1668 255 318 45 50 chr4 141972061 141972260 -13657860 + L1MB2 LINE L1 5794 5991 -180 1 1668 509 240 48 0 chr4 141972496 141972621 -13657499 - B3 SINE B2 0 216 86 1 1668 439 217 91 36 chr4 141972663 141972773 -13657347 - B1F SINE Alu -21 128 13 1 1668 480 360 33 14 chr4 141972978 141973406 -13656714 + L1ME2z LINE L1 5636 6071 -373 1 1668 308 254 0 15 chr4 141973426 141973494 -13656626 + B3 SINE B2 3 69 -147 1 1668 215 261 83 42 chr4 141973493 141973565 -13656555 - B4 SINE B4 -201 91 17 1 1668 327 252 206 24 chr4 141973579 141973705 -13656415 - B1F1 SINE Alu 0 149 1 1 1668 282 227 0 43 chr4 141973705 141973774 -13656346 + MER74A LTR ERVL 474 539 -19 1 1668 1166 52 0 0 chr4 141973932 141974066 -13656054 + B1_Mus2 SINE Alu 1 134 -13 1 1668 214 50 0 48 chr4 141974066 141974108 -13656012 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1668 240 209 70 3 chr4 141974212 141974297 -13655823 - MIR SINE MIR -98 178 81 1 1668 285 338 47 13 chr4 141974968 141975118 -13655002 + LTR84b LTR ERVL 553 707 -54 1 1668 912 292 21 17 chr4 141975153 141975390 -13654730 - B4A SINE B4 -8 284 47 1 1668 350 288 34 67 chr4 141976985 141977104 -13653016 - RSINE1 SINE B4 -47 118 4 1 1668 702 259 28 69 chr4 141977128 141977344 -13652776 - B3 SINE B2 -5 211 5 1 1668 210 360 93 63 chr4 141977344 141977398 -13652722 - L2a LINE L2 -4 3422 3374 1 1668 1008 184 48 82 chr4 141977398 141977629 -13652491 - URR1A DNA MER1_type 0 226 4 1 1668 210 360 93 63 chr4 141977629 141977811 -13652309 - L2a LINE L2 -53 3373 3179 1 1668 279 0 0 0 chr4 141978093 141978124 -13651996 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1668 237 289 19 0 chr4 141978182 141978234 -13651886 - ID_B1 SINE B4 -52 172 120 1 1668 330 268 0 14 chr4 141978234 141978306 -13651814 - ID2 SINE ID -9 74 4 1 1668 221 293 62 63 chr4 141978455 141978619 -13651501 + MER5A DNA MER1_type 4 187 -2 1 1668 693 259 29 0 chr4 141978687 141978826 -13651294 + RSINE1 SINE B4 2 144 -21 1 1668 446 0 19 0 chr4 141978835 141978889 -13651231 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1668 227 304 72 0 chr4 141978943 141979012 -13651108 + MER5A DNA MER1_type 86 159 -30 1 1668 944 138 195 36 chr4 141979318 141979513 -13650607 + URR1A DNA MER1_type 1 226 0 1 1668 795 97 0 0 chr4 141979543 141979657 -13650463 + (TG)n Simple_repeat Simple_repeat 2 115 0 1 1668 232 312 47 0 chr4 141979888 141979952 -13650168 + RMER30 DNA MER1_type 133 199 -3 1 1668 645 267 167 44 chr4 141980041 141980358 -13649762 - ORR1E LTR MaLR -2 357 2 1 1668 187 298 101 62 chr4 141980403 141980532 -13649588 + L3 LINE CR1 1 134 -4355 1 1668 581 250 58 209 chr4 141983044 141983142 -13646978 + B4A SINE B4 1 87 -205 1 1668 523 306 12 24 chr4 141983142 141983306 -13646814 + RSINE1 SINE B4 4 165 0 1 1668 581 250 58 209 chr4 141983306 141983551 -13646569 + B4A SINE B4 88 292 0 1 1668 473 328 149 39 chr4 141983759 141984114 -13646006 + MLT1C LTR MaLR 59 452 -15 1 1668 379 266 13 0 chr4 141984113 141984192 -13645928 - B4A SINE B4 -212 80 1 1 1668 387 41 0 0 chr4 141984676 141984725 -13645395 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1668 220 289 61 20 chr4 141985011 141985110 -13645010 + MIR SINE MIR 90 192 -70 1 1668 784 237 17 55 chr4 141985262 141985467 -13644653 + B3A SINE B2 6 202 -14 1 1668 408 216 0 0 chr4 141985469 141985566 -13644554 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1668 981 157 6 17 chr4 141985548 141985908 -13644212 + (CATA)n Simple_repeat Simple_repeat 1 356 0 1 1668 278 373 43 18 chr4 141986041 141986205 -13643915 - RMER15 LTR ERVL -5 570 403 1 1668 561 15 0 0 chr4 141986655 141986721 -13643399 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1668 31 0 0 0 chr4 141987822 141987853 -13642267 + GC_rich Low_complexity Low_complexity 1 31 0 1 1668 1408 203 37 11 chr4 141988072 141988341 -13641779 + B4A SINE B4 5 280 -12 1 1668 969 26 0 0 chr4 141988343 141988459 -13641661 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1668 289 288 80 44 chr4 141988747 141988877 -13641243 + ORR1E LTR MaLR 47 167 -207 1 1668 302 252 69 20 chr4 141989088 141989189 -13640931 + MER5A DNA MER1_type 14 119 -70 1 1668 613 163 34 23 chr4 141989399 141989575 -13640545 + (TATG)n Simple_repeat Simple_repeat 3 180 0 1 1668 479 330 52 45 chr4 141989585 141989874 -13640246 - B4A SINE B4 -1 291 1 1 1668 251 310 83 33 chr4 141989997 141990117 -13640003 - YREP_Mm Unknown Unknown -1501 311 186 1 1668 608 227 0 0 chr4 141990013 141990123 -13639997 + ID_B1 SINE B4 112 221 -3 1 1668 330 269 0 0 chr4 141990987 141991054 -13639066 + ID SINE ID 8 74 -150 1 1668 597 139 11 4 chr4 141991052 141991156 -13638964 + B3 SINE B2 16 117 -78 1 1668 234 0 0 0 chr4 141991205 141991231 -13638889 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1668 195 226 30 61 chr4 141991258 141991324 -13638796 + MIR SINE MIR 41 104 -104 1 1668 279 120 0 74 chr4 141992092 141992146 -13637974 - L2b LINE L2 -4 3371 3322 1 1668 186 205 0 93 chr4 141992149 141992192 -13637928 - L2c LINE L2 -23 3364 3326 1 1668 463 248 109 45 chr4 141993070 141993226 -13636894 - MER20 DNA MER1_type -7 212 47 1 1668 255 125 0 0 chr4 141993386 141993426 -13636694 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 1 1668 198 0 0 0 chr4 141993428 141993450 -13636670 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1668 3976 84 13 7 chr4 141994666 141995205 -13634915 - L1_Mus2 LINE L1 0 6566 6025 1 1668 243 0 0 0 chr4 141996587 141996614 -13633506 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1668 599 258 231 18 chr4 141996642 141996867 -13633253 - B4 SINE B4 -18 274 2 1 1668 183 205 0 0 chr4 141996888 141996927 -13633193 + (CACG)n Simple_repeat Simple_repeat 1 39 0 1 1668 799 228 6 30 chr4 141996935 141997102 -13633018 - RSINE1 SINE B4 0 165 3 1 1668 414 267 24 40 chr4 141997717 141997842 -13632278 + MTEb LTR MaLR 252 374 -5 1 1668 659 191 7 0 chr4 141999514 141999661 -13630459 + GA-rich Low_complexity Low_complexity 2 149 0 1 1668 228 313 0 29 chr4 142000331 142000400 -13629720 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 1668 583 341 14 23 chr4 142000409 142000625 -13629495 + MER2 DNA MER2_type 111 324 -21 2 1668 1628 31 0 0 chr4 142000625 142000817 -13629303 - MTA_Mm LTR MaLR 0 396 205 3 1668 2117 127 71 42 chr4 142000724 142001134 -13628986 + MTB-int LTR MaLR 677 1098 0 4 1668 3122 56 5 25 chr4 142001134 142001538 -13628582 + MTB LTR MaLR 1 396 -4 4 1668 229 223 104 21 chr4 142001907 142002003 -13628117 + B3A SINE B2 2 105 -93 5 1668 398 297 93 8 chr4 142001964 142002093 -13628027 + B4A SINE B4 66 205 -87 6 1668 398 79 0 16 chr4 142002100 142002164 -13627956 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1668 260 0 0 54 chr4 142002257 142002294 -13627826 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 8 1668 1116 160 11 0 chr4 142002300 142002481 -13627639 + URR1A DNA MER1_type 44 226 0 9 1668 265 250 129 9 chr4 142003024 142003134 -13626986 + B4 SINE B4 78 286 -6 6 1668 431 78 16 0 chr4 142003153 142003217 -13626903 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1668 832 211 43 135 chr4 142003217 142003447 -13626673 + B4A SINE B4 84 292 0 1 1668 230 179 0 18 chr4 142003832 142003889 -13626231 + GA-rich Low_complexity Low_complexity 4 59 0 1 1668 1256 234 43 11 chr4 142004008 142004284 -13625836 + B4A SINE B4 2 286 -6 1 1668 221 57 29 0 chr4 142004333 142004368 -13625752 + (CATA)n Simple_repeat Simple_repeat 4 39 0 1 1668 433 297 0 45 chr4 142004836 142004970 -13625150 - MIRb SINE MIR -60 208 81 1 1668 729 239 36 7 chr4 142005121 142005260 -13624860 + RSINE1 SINE B4 3 145 -20 1 1668 208 211 195 13 chr4 142005363 142005440 -13624680 + MIRc SINE MIR 129 219 -49 1 1668 1389 63 0 0 chr4 142005970 142006256 -13623864 + (TG)n Simple_repeat Simple_repeat 1 286 0 1 1668 657 324 14 29 chr4 142006319 142006529 -13623591 + B4A SINE B4 60 266 -26 1 1668 1032 128 0 0 chr4 142006537 142006820 -13623300 + (CA)n Simple_repeat Simple_repeat 1 283 0 2 1668 495 157 0 0 chr4 142006829 142006918 -13623202 + GA-rich Low_complexity Low_complexity 1 89 0 2 1668 265 311 24 98 chr4 142006982 142007146 -13622974 + L2 LINE L2 2918 3069 -350 2 1668 798 267 116 73 chr4 142009266 142009541 -13620579 + B4 SINE B4 2 288 -4 2 1668 287 157 0 14 chr4 142009570 142009641 -13620479 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1668 200 167 21 0 chr4 142009753 142009801 -13620319 + GA-rich Low_complexity Low_complexity 2 50 0 2 1668 1223 85 0 11 chr4 142009805 142009984 -13620136 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 2 1668 335 331 103 16 chr4 142010870 142011054 -13619066 - RMER15 LTR ERVL -23 552 353 2 1668 545 233 404 25 chr4 142012005 142012213 -13617907 + B4 SINE B4 6 292 0 2 1668 547 178 28 17 chr4 142012238 142012415 -13617705 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1668 327 178 46 23 chr4 142012428 142012601 -13617519 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1668 375 264 28 28 chr4 142012601 142012710 -13617410 - MIRb SINE MIR -137 131 23 3 1668 514 253 46 71 chr4 142013012 142013208 -13616912 + B3A SINE B2 3 193 -5 3 1668 310 326 103 7 chr4 142013320 142013456 -13616664 - MIRc SINE MIR -43 225 77 3 1668 1266 239 40 4 chr4 142014064 142014337 -13615783 + B4A SINE B4 6 288 -4 3 1668 812 279 20 34 chr4 142015422 142015626 -13614494 - B4 SINE B4 -10 282 82 3 1668 753 160 24 0 chr4 142015680 142015976 -13614144 + (TG)n Simple_repeat Simple_repeat 1 303 0 3 1668 765 259 9 47 chr4 142015976 142016018 -13614102 - B3 SINE B2 -13 203 163 3 1668 856 108 30 0 chr4 142016018 142016184 -13613936 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1668 765 259 9 47 chr4 142016184 142016352 -13613768 - B3 SINE B2 -54 162 1 3 1668 207 0 0 0 chr4 142017261 142017284 -13612836 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1668 212 100 0 24 chr4 142017338 142017379 -13612741 + (GGGTG)n Simple_repeat Simple_repeat 2 41 0 3 1668 653 274 115 21 chr4 142017441 142017676 -13612444 + B4A SINE B4 1 257 -35 4 1668 396 0 0 0 chr4 142017701 142017745 -13612375 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1668 193 195 24 0 chr4 142017872 142017913 -13612207 + MIRc SINE MIR 104 145 -123 4 1668 350 301 0 0 chr4 142018214 142018307 -13611813 + MTEa LTR MaLR 1 93 -286 4 1668 485 248 420 17 chr4 142018297 142018535 -13611585 + MTEa LTR MaLR 45 378 -1 4 1668 775 261 71 32 chr4 142019290 142019571 -13610549 - B4 SINE B4 0 292 1 4 1668 384 135 0 0 chr4 142020689 142020763 -13609357 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1668 846 277 92 21 chr4 142020877 142021117 -13609003 - B4 SINE B4 -35 257 1 4 1668 279 333 11 33 chr4 142021749 142021839 -13608281 + MER20 DNA MER1_type 1 88 -131 4 1668 477 280 45 75 chr4 142022285 142022552 -13607568 + MTD LTR MaLR 3 241 -138 4 1668 210 222 0 0 chr4 142022732 142022777 -13607343 + GA-rich Low_complexity Low_complexity 1 45 0 4 1668 345 153 73 0 chr4 142022802 142022926 -13607194 + (TA)n Simple_repeat Simple_repeat 1 133 0 5 1668 307 286 0 45 chr4 142023495 142023583 -13606537 - PB1D10 SINE Alu -4 113 30 5 1668 199 241 75 12 chr4 142024035 142024115 -13606005 + MIRm SINE MIR 18 102 -174 5 1668 325 227 23 13 chr4 142024189 142024499 -13605621 + (TG)n Simple_repeat Simple_repeat 1 313 0 5 1668 1131 219 59 62 chr4 142024502 142024790 -13605330 - B4A SINE B4 0 292 6 5 1668 718 183 0 12 chr4 142024960 142025131 -13604989 + (TCCA)n Simple_repeat Simple_repeat 4 172 0 5 1668 328 191 22 44 chr4 142025182 142025289 -13604831 - L2a LINE L2 -3 3423 3282 5 1668 274 216 156 39 chr4 142025308 142025385 -13604735 + MER20 DNA MER1_type 8 93 -126 5 1668 311 345 141 7 chr4 142025937 142026086 -13604034 + MIR SINE MIR 15 183 -79 5 1668 217 293 17 0 chr4 142027680 142027738 -13602382 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1668 405 0 0 0 chr4 142078096 142078141 -13551979 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1668 868 124 34 81 chr4 142078291 142078440 -13551680 + B1_Mur1 SINE Alu 2 143 -6 6 1668 245 214 436 43 chr4 142078713 142078830 -13551290 - RSINE1 SINE B4 0 165 3 6 1668 913 281 45 35 chr4 142079170 142079458 -13550662 - B4A SINE B4 -1 291 1 6 1668 362 298 120 60 chr4 142080146 142080296 -13549824 + RSINE1 SINE B4 2 160 -5 6 1668 29 70 0 0 chr4 142080308 142080365 -13549755 + AT_rich Low_complexity Low_complexity 1 57 0 6 1668 438 283 19 0 chr4 142080893 142080999 -13549121 - PB1D7 SINE Alu -12 108 1 6 1668 507 270 145 20 chr4 142081160 142081360 -13548760 - B4A SINE B4 -16 276 52 6 1668 405 0 0 0 chr4 142081368 142081413 -13548707 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1668 360 0 0 0 chr4 142081413 142081453 -13548667 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1668 979 67 13 0 chr4 142081557 142081706 -13548414 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 7 1668 676 260 26 0 chr4 142081773 142081927 -13548193 - B4 SINE B4 -51 241 84 7 208 743 300 52 5 chr4 142082020 142082211 -13547909 + ID_B1 SINE B4 4 203 -21 7 1669 308 229 0 12 chr4 142082216 142082300 -13547820 + GA-rich Low_complexity Low_complexity 2 84 0 7 1669 861 116 17 17 chr4 142082299 142082475 -13547645 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 7 1669 434 316 72 68 chr4 142083801 142084022 -13546098 + MER2 DNA MER2_type 124 345 0 7 1669 631 236 191 25 chr4 142084020 142084255 -13545865 - MLT1B LTR MaLR 0 390 117 7 1669 1370 236 42 16 chr4 142084393 142084703 -13545417 + MTE2b LTR MaLR 6 323 -56 7 1669 327 104 0 0 chr4 142084709 142084757 -13545363 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 7 1669 341 256 136 8 chr4 142085266 142085384 -13544736 + MIR SINE MIR 111 243 -19 7 1669 207 0 0 0 chr4 142085550 142085573 -13544547 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1669 436 277 0 0 chr4 142085602 142085688 -13544432 - B4A SINE B4 -5 287 202 8 1669 3749 196 44 41 chr4 142085688 142086490 -13543630 + RMER13A LTR ERVK 1 804 -56 8 1669 609 195 9 0 chr4 142086484 142086597 -13543523 - ORR1D2 LTR MaLR -256 114 1 8 1669 826 247 91 88 chr4 142086960 142087279 -13542841 + MTEa LTR MaLR 60 379 0 8 1669 566 176 11 17 chr4 142088210 142088389 -13541731 + GA-rich Low_complexity Low_complexity 2 179 0 8 1669 271 285 55 28 chr4 142089263 142089385 -13540735 - MIR SINE MIR -40 168 38 8 1669 615 27 0 0 chr4 142089424 142089497 -13540623 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1669 269 269 0 25 chr4 142089497 142089577 -13540543 + (TG)n Simple_repeat Simple_repeat 2 79 0 8 1669 853 286 51 0 chr4 142089610 142089865 -13540255 - B4A SINE B4 -18 274 7 8 1669 311 281 33 58 chr4 142089881 142090002 -13540118 + MIRc SINE MIR 113 230 -38 9 1669 1370 225 15 123 chr4 142090048 142090486 -13539634 - MTD LTR MaLR -2 417 23 9 1669 306 0 0 0 chr4 142090486 142090520 -13539600 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1669 1370 225 15 123 chr4 142090520 142090546 -13539574 - MTD LTR MaLR -397 22 3 9 1669 443 157 11 0 chr4 142091716 142091805 -13538315 + (TCCA)n Simple_repeat Simple_repeat 4 93 0 9 1669 459 167 0 0 chr4 142091907 142091997 -13538123 + (TCCA)n Simple_repeat Simple_repeat 2 91 0 9 1669 461 318 89 5 chr4 142092096 142092298 -13537822 - MIRc SINE MIR -41 227 9 9 1669 337 353 0 34 chr4 142092638 142092726 -13537394 + RSINE1 SINE B4 81 165 0 9 1669 257 240 20 0 chr4 142092727 142092827 -13537293 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 9 1669 224 140 19 39 chr4 142093648 142093700 -13536420 + A-rich Low_complexity Low_complexity 1 51 0 9 1669 1445 206 60 74 chr4 142093700 142094066 -13536054 + MTD LTR MaLR 59 419 0 9 1669 360 0 0 0 chr4 142094233 142094273 -13535847 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1669 826 269 91 51 chr4 142095370 142095620 -13534500 + B4A SINE B4 4 266 -26 1 1669 405 0 0 0 chr4 142095620 142095665 -13534455 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1669 826 269 91 51 chr4 142095665 142095688 -13534432 + B4A SINE B4 267 288 -4 1 1669 275 225 0 53 chr4 142096561 142096655 -13533465 + G-rich Low_complexity Low_complexity 5 93 0 1 1669 239 215 15 0 chr4 142097295 142097360 -13532760 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1669 267 253 26 13 chr4 142097458 142097534 -13532586 - ORR1E LTR MaLR 0 359 283 1 1669 539 300 84 30 chr4 142097882 142098267 -13531853 + L1MB7 LINE L1 5767 6178 0 1 1669 441 0 0 0 chr4 142099115 142099164 -13530956 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1669 798 251 61 10 chr4 142099170 142099367 -13530753 - B4A SINE B4 -24 268 62 1 1669 501 296 60 56 chr4 142099374 142099681 -13530439 + RLTR12B LTR ERVK 11 311 -257 1 1669 281 281 0 15 chr4 142099845 142099910 -13530210 - B4 SINE B4 -222 70 7 1 1669 267 31 0 0 chr4 142099972 142100004 -13530116 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1669 396 0 0 0 chr4 142100004 142100047 -13530073 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1669 594 264 191 36 chr4 142100745 142100996 -13529124 - B4A SINE B4 0 292 3 1 1669 306 287 112 62 chr4 142101067 142101227 -13528893 - L1MD3 LINE L1 -1261 6734 6567 1 1669 293 339 16 86 chr4 142101856 142102043 -13528077 + MLT1M LTR MaLR 130 303 -369 1 1669 229 320 30 74 chr4 142102319 142102454 -13527666 - MIR SINE MIR -9 253 125 1 1669 846 195 23 131 chr4 142102560 142102839 -13527281 - MTEa LTR MaLR -4 375 101 1 1669 442 256 73 16 chr4 142104910 142105033 -13525087 + ORR1D1 LTR MaLR 13 142 -232 1 1669 277 250 0 56 chr4 142105048 142105120 -13525000 + B4A SINE B4 149 216 -76 1 1669 1272 48 0 0 chr4 142105152 142105299 -13524821 + B1_Mm SINE Alu 1 147 0 1 1669 709 324 30 94 chr4 142105329 142105595 -13524525 - MTE2a LTR MaLR -30 349 101 1 1669 1172 264 4 7 chr4 142106913 142107184 -13522936 + B4A SINE B4 2 271 -21 1 1669 401 0 20 0 chr4 142107187 142107236 -13522884 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1669 311 294 38 109 chr4 142108520 142108703 -13521417 + HAL1-3A_ME LINE L1 2275 2444 -414 1 1669 288 0 0 0 chr4 142108884 142108916 -13521204 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1669 241 327 137 10 chr4 142109044 142109146 -13520974 + MER2 DNA MER2_type 224 338 -7 1 1669 261 0 0 0 chr4 142109753 142109782 -13520338 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1669 303 240 29 136 chr4 142109814 142109848 -13520272 - B2_Mm2 SINE B2 -9 186 160 1 1669 495 33 0 0 chr4 142109848 142109909 -13520211 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1669 409 240 29 136 chr4 142109909 142110014 -13520106 - B3A SINE B2 -21 177 62 1 1669 381 117 0 0 chr4 142110014 142110074 -13520046 - L1_Mur1 LINE L1 -3298 2588 2529 1 1669 440 184 0 73 chr4 142110074 142110156 -13519964 - B3A SINE B2 -122 76 1 1 1669 387 0 0 0 chr4 142110617 142110660 -13519460 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1669 432 0 0 0 chr4 142110660 142110707 -13519413 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1669 225 272 12 24 chr4 142110720 142110803 -13519317 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1669 287 302 64 48 chr4 142111216 142111341 -13518779 - Tigger7 DNA MER2_type 0 2491 2365 1 1669 1139 252 89 19 chr4 142111338 142111654 -13518466 - Tigger7 DNA MER2_type -2082 409 72 1 1669 584 331 58 0 chr4 142111751 142111905 -13518215 - RSINE1 SINE B4 -1 164 2 1 1669 587 303 13 27 chr4 142112737 142112961 -13517159 + RMER15 LTR ERVL 336 556 -19 1 1669 239 250 94 59 chr4 142114335 142114420 -13515700 + MTEb LTR MaLR 289 376 -3 1 1669 243 88 0 0 chr4 142114721 142114755 -13515365 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 1 1669 336 246 100 43 chr4 142114889 142115029 -13515091 + B1F SINE Alu 1 148 -1 1 1669 679 283 83 26 chr4 142115828 142116093 -13514027 + B4 SINE B4 3 282 -10 1 1669 462 65 0 0 chr4 142116110 142116172 -13513948 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1669 209 395 85 8 chr4 142116272 142116402 -13513718 - MIR3 SINE MIR -51 157 18 1 1669 383 307 0 0 chr4 142117758 142117846 -13512274 - PB1D10 SINE Alu -5 112 25 1 1669 246 284 53 74 chr4 142117853 142117948 -13512172 + MLT1I LTR MaLR 35 127 -284 1 1669 417 280 36 50 chr4 142117956 142118095 -13512025 - MER2B DNA MER2_type -7 329 193 1 1669 1632 172 78 6 chr4 142118103 142118424 -13511696 - ORR1D1 LTR MaLR -30 344 1 1 1669 835 269 40 76 chr4 142118499 142118801 -13511319 + B4 SINE B4 2 292 0 1 1669 342 115 0 0 chr4 142118803 142118855 -13511265 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1669 459 0 0 0 chr4 142118855 142118906 -13511214 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1669 659 284 7 0 chr4 142119748 142119889 -13510231 + ID_B1 SINE B4 82 223 -1 1 1669 588 241 4 0 chr4 142120875 142121116 -13509004 + (TA)n Simple_repeat Simple_repeat 1 242 0 1 1669 248 77 0 25 chr4 142121574 142121614 -13508506 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1669 302 229 16 0 chr4 142122095 142122156 -13507964 - L1MEg LINE L1 -4140 1944 1883 1 1669 890 43 0 9 chr4 142122167 142122283 -13507837 + (TTCTCC)n Simple_repeat Simple_repeat 3 117 0 1 1669 1019 52 0 36 chr4 142122285 142122425 -13507695 - B1_Mm SINE Alu 0 147 13 1 1669 639 193 58 8 chr4 142122423 142122543 -13507577 - B1_Mus2 SINE Alu -11 136 11 1 1669 183 156 0 0 chr4 142122701 142122733 -13507387 + G-rich Low_complexity Low_complexity 5 36 0 1 1669 636 276 81 22 chr4 142123044 142123229 -13506891 - B4 SINE B4 -95 197 2 1 1669 205 203 45 45 chr4 142123413 142123480 -13506640 - MIRc SINE MIR -131 145 79 1 1669 312 230 17 15 chr4 142123803 142123891 -13506229 + MTE2a LTR MaLR 277 365 -14 1 1669 490 293 111 50 chr4 142123911 142124173 -13505947 - ORR1E LTR MaLR -5 354 77 1 1669 344 325 67 0 chr4 142124221 142124341 -13505779 - MLT2B3 LTR ERVL -424 130 3 1 1669 690 47 0 0 chr4 142124824 142124910 -13505210 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 1 1669 2474 164 10 5 chr4 142126447 142126864 -13503256 + MTD LTR MaLR 1 419 0 1 1669 1052 246 3 34 chr4 142127066 142127368 -13502752 + Lx5 LINE L1 6235 6747 -713 1 1669 817 240 11 172 chr4 142127380 142127728 -13502392 + B4A SINE B4 1 292 0 1 1669 423 0 0 0 chr4 142127823 142127870 -13502250 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1669 684 217 7 34 chr4 142128424 142128572 -13501548 + RSINE1 SINE B4 2 145 -20 1 1669 414 0 0 0 chr4 142128573 142128619 -13501501 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1669 290 260 126 55 chr4 142128967 142129150 -13500970 - L1MD3 LINE L1 -13 7982 7787 1 1669 1227 270 69 55 chr4 142129502 142129906 -13500214 - MTD LTR MaLR -2 417 8 1 1669 308 296 79 16 chr4 142130703 142130830 -13499290 - L1M5 LINE L1 -2932 3214 3080 1 1669 3131 63 5 12 chr4 142130985 142131387 -13498733 + MTB LTR MaLR 2 400 0 1 1669 635 246 29 0 chr4 142131431 142131569 -13498551 - B1F SINE Alu -6 143 2 1 1669 289 307 73 67 chr4 142131633 142131811 -13498309 + ORR1C1 LTR MaLR 6 184 -194 1 1669 1170 227 33 15 chr4 142131878 142132151 -13497969 - B4 SINE B4 -14 278 1 1 1669 1258 136 97 0 chr4 142132402 142132608 -13497512 + URR1A DNA MER1_type 1 226 0 1 1669 180 111 0 0 chr4 142132830 142132857 -13497263 + (CTTG)n Simple_repeat Simple_repeat 3 29 0 1 1669 603 0 0 0 chr4 142132858 142132925 -13497195 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 1 1669 280 410 54 5 chr4 142132925 142133109 -13497011 - L2b LINE L2 -14 3361 3169 1 1669 1030 220 28 5 chr4 142133529 142133744 -13496376 + ID_B1 SINE B4 2 221 -3 1 1669 1279 251 64 42 chr4 142134362 142134736 -13495384 + MTE2a LTR MaLR 27 418 -1 1 1669 272 207 202 24 chr4 142135194 142135278 -13494842 - PB1D10 SINE Alu 0 117 19 1 1669 387 0 0 0 chr4 142135754 142135797 -13494323 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1669 655 262 6 67 chr4 142135869 142136049 -13494071 + B4A SINE B4 5 173 -119 1 1669 200 163 0 23 chr4 142136132 142136176 -13493944 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1669 23 0 0 0 chr4 142136176 142136199 -13493921 + AT_rich Low_complexity Low_complexity 1 23 0 1 1669 830 234 41 32 chr4 142137394 142137615 -13492505 + ID_B1 SINE B4 2 224 0 1 1669 312 176 0 0 chr4 142137731 142137799 -13492321 + (ATGGTG)n Simple_repeat Simple_repeat 1 68 0 1 1669 487 242 11 0 chr4 142138795 142138973 -13491147 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1669 432 276 78 83 chr4 142139007 142139320 -13490800 - B4A SINE B4 -11 281 2 1 1669 365 352 83 39 chr4 142139394 142139757 -13490363 + L3 LINE CR1 4004 4382 -107 1 1669 350 287 79 0 chr4 142139922 142140023 -13490097 + MLT1G3 LTR MaLR 63 171 -424 1 1669 189 0 0 0 chr4 142140248 142140269 -13489851 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1669 567 174 0 0 chr4 142140269 142140413 -13489707 + GA-rich Low_complexity Low_complexity 1 144 0 1 1669 270 321 106 47 chr4 142140462 142140632 -13489488 + MLT1G3 LTR MaLR 372 551 -9 1 1669 1729 144 173 6 chr4 142141227 142141362 -13488758 + ORR1C2 LTR MaLR 1 146 -238 1 1669 360 0 0 0 chr4 142141362 142141402 -13488718 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1669 1729 144 173 6 chr4 142141402 142141595 -13488525 + ORR1C2 LTR MaLR 147 383 -1 1 1669 815 279 75 18 chr4 142141675 142141901 -13488219 - B4 SINE B4 -46 246 8 1 1669 516 246 111 71 chr4 142142243 142142523 -13487597 + B4A SINE B4 1 291 -1 1 1669 461 351 47 10 chr4 142142948 142143141 -13486979 + MER58B DNA MER1_type 134 333 -8 1 1669 429 104 71 8 chr4 142143324 142143450 -13486670 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 1 1669 356 275 54 18 chr4 142144155 142144266 -13485854 + MTD LTR MaLR 10 124 -297 2 1669 22 0 0 0 chr4 142144266 142144288 -13485832 + AT_rich Low_complexity Low_complexity 1 22 0 2 1669 398 20 0 19 chr4 142144288 142144340 -13485780 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1669 766 256 0 30 chr4 142144341 142144510 -13485610 - B3A SINE B2 -34 164 1 2 1669 919 194 216 8 chr4 142144510 142144758 -13485362 + MTD LTR MaLR 119 419 0 2 1669 1988 171 54 9 chr4 142144938 142145287 -13484833 + ORR1D1 LTR MaLR 5 369 -5 2 1669 1790 193 45 70 chr4 142145339 142145740 -13484380 - MTD LTR MaLR -28 391 1 2 1669 735 267 35 70 chr4 142145740 142146039 -13484081 - L1M2 LINE L1 -678 5619 5330 2 1669 2850 34 0 206 chr4 142146039 142146525 -13483595 - RLTR10 LTR ERVK -4 386 1 2 1669 735 267 35 70 chr4 142146525 142146539 -13483581 - L1M2 LINE L1 -968 5329 5317 2 1669 8981 15 0 1 chr4 142146539 142147523 -13482597 - RLTR10-int LTR ERVK -15 1972 990 2 1669 349 273 39 15 chr4 142147605 142147735 -13482385 - RLTR10-int LTR ERVK -5987 1594 1462 2 1669 7968 44 9 8 chr4 142147799 142148765 -13481355 - RLTR10-int LTR ERVK -989 998 3 2 1669 2850 34 0 206 chr4 142148773 142149259 -13480861 - RLTR10 LTR ERVK -4 386 1 2 1669 543 314 39 4 chr4 142149300 142149545 -13480575 + L1MA4 LINE L1 5703 5951 -205 2 1669 433 227 94 72 chr4 142149777 142149969 -13480151 - B3 SINE B2 0 195 14 2 1669 203 193 35 0 chr4 142150358 142150415 -13479705 + CT-rich Low_complexity Low_complexity 2 60 0 2 1669 225 302 0 0 chr4 142150466 142150519 -13479601 - ID4_ SINE ID -26 57 5 2 1669 397 345 123 77 chr4 142150825 142151045 -13479075 + MamGypLTR1a LTR Gypsy 365 594 -190 2 1669 23 0 0 0 chr4 142151587 142151610 -13478510 + AT_rich Low_complexity Low_complexity 1 23 0 2 1669 5532 64 1 3 chr4 142151638 142152330 -13477790 - L1_Mus1 LINE L1 -1 6566 5876 2 1669 243 0 0 0 chr4 142152679 142152706 -13477414 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1669 186 43 0 0 chr4 142153369 142153392 -13476728 + (TTC)n Simple_repeat Simple_repeat 2 24 0 2 1669 318 258 22 33 chr4 142154065 142154157 -13475963 - MTEb LTR MaLR -26 353 263 2 1669 546 245 57 7 chr4 142154153 142154293 -13475827 - MTEb LTR MaLR -230 149 3 2 1669 268 301 24 0 chr4 142154386 142154469 -13475651 + Tigger5 DNA MER2_type 2321 2405 -1 2 1669 184 298 35 0 chr4 142154668 142154725 -13475395 - MIRb SINE MIR -6 262 204 2 1669 696 237 106 45 chr4 142154994 142155193 -13474927 + B4 SINE B4 19 229 -63 2 1669 255 110 23 68 chr4 142155314 142155402 -13474718 + CT-rich Low_complexity Low_complexity 3 86 0 2 1669 464 238 142 7 chr4 142155458 142155606 -13474514 + B4A SINE B4 100 267 -25 2 1669 237 287 42 11 chr4 142155627 142155722 -13474398 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 1669 480 77 0 0 chr4 142155768 142155833 -13474287 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1669 250 241 43 65 chr4 142156188 142156281 -13473839 + MLT1A1 LTR MaLR 318 408 0 2 1669 31 0 0 0 chr4 142156834 142156865 -13473255 + AT_rich Low_complexity Low_complexity 1 31 0 2 1669 788 336 133 17 chr4 142156881 142157347 -13472773 - MLT1K LTR MaLR -72 523 4 2 1669 387 346 70 55 chr4 142157349 142157621 -13472499 - ORR1E LTR MaLR -5 354 79 2 1669 347 198 84 24 chr4 142157644 142157727 -13472393 - MLT1A1 LTR MaLR -294 114 27 2 1669 463 170 24 0 chr4 142157772 142157937 -13472183 + (TCTG)n Simple_repeat Simple_repeat 4 172 0 2 1669 761 142 0 16 chr4 142157896 142158164 -13471956 + (TCTCTG)n Simple_repeat Simple_repeat 1 263 0 2 1669 282 56 0 0 chr4 142158160 142158196 -13471924 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 2 1669 740 272 12 168 chr4 142158228 142158568 -13471552 - B4 SINE B4 -4 288 2 2 1669 1525 270 10 39 chr4 142159057 142159442 -13470678 - MTEa LTR MaLR 0 379 6 2 1669 851 265 23 5 chr4 142159764 142159980 -13470140 + ID_B1 SINE B4 2 221 -3 2 1669 282 56 0 0 chr4 142159980 142160016 -13470104 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 2 1669 226 192 58 0 chr4 142161214 142161266 -13468854 + G-rich Low_complexity Low_complexity 1 55 0 2 1669 709 241 94 60 chr4 142161269 142161534 -13468586 - B4A SINE B4 -18 274 1 2 1669 395 275 143 34 chr4 142161534 142161681 -13468439 + MER20 DNA MER1_type 55 217 -2 2 1669 235 268 71 20 chr4 142163473 142163572 -13466548 - MER53 DNA hAT -62 131 28 2 1669 212 298 181 42 chr4 142163586 142163824 -13466296 + L2b LINE L2 2932 3202 -173 2 1669 30 0 0 0 chr4 142164959 142164989 -13465131 + AT_rich Low_complexity Low_complexity 1 30 0 2 1669 614 345 60 71 chr4 142165188 142165469 -13464651 + MLT1G3 LTR MaLR 259 536 -59 2 1669 961 291 32 21 chr4 142165482 142165763 -13464357 + B4A SINE B4 5 288 -4 2 1669 183 274 0 161 chr4 142166394 142166481 -13463639 + MIRc SINE MIR 108 180 -88 2 1669 184 338 116 58 chr4 142168375 142168513 -13461607 - MIRc SINE MIR -64 204 59 2 1669 587 254 8 0 chr4 142169511 142169629 -13460491 + MTEb LTR MaLR 1 119 -260 2 1669 1130 233 43 99 chr4 142170058 142170430 -13459690 - ORR1E LTR MaLR -4 355 5 2 1669 240 353 20 0 chr4 142170435 142170537 -13459583 - MIR SINE MIR -43 219 116 2 1669 508 314 16 0 chr4 142170548 142170669 -13459451 + RSINE1 SINE B4 17 139 -26 2 1669 414 85 0 0 chr4 142170669 142170728 -13459392 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1669 1234 268 7 0 chr4 142170809 142171096 -13459024 - B4A SINE B4 -2 290 2 2 1669 230 292 14 14 chr4 142171772 142171845 -13458275 + L2c LINE L2 3281 3353 -34 2 1669 222 37 0 0 chr4 142171865 142171892 -13458228 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 2 1669 644 270 158 16 chr4 142172038 142172365 -13457755 - L1MB7 LINE L1 -24 6154 5785 2 1669 274 325 26 13 chr4 142172376 142172532 -13457588 - L1M4 LINE L1 -1539 4601 4444 2 1669 962 79 0 19 chr4 142172562 142172717 -13457403 - RMER17B LTR ERVK -495 463 312 2 1669 346 242 69 63 chr4 142172717 142172876 -13457244 - L1M4 LINE L1 -1715 4431 4272 2 1669 994 235 125 19 chr4 142172913 142173169 -13456951 - B4A SINE B4 0 292 10 2 1669 333 291 33 13 chr4 142173178 142173331 -13456789 - L1M4 LINE L1 -2664 3482 3327 2 1669 254 246 80 18 chr4 142173803 142173915 -13456205 - L1M4 LINE L1 -2999 3147 3029 2 1669 551 218 101 19 chr4 142174725 142174760 -13455360 + B4 SINE B4 52 99 -193 2 1669 803 95 159 0 chr4 142174760 142174886 -13455234 + B1_Mus2 SINE Alu 2 147 0 2 1669 317 300 103 114 chr4 142175262 142175451 -13454669 - LTR33 LTR ERVL -58 457 263 2 1669 198 0 0 0 chr4 142175451 142175473 -13454647 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1669 317 300 103 114 chr4 142175473 142175633 -13454487 - LTR33 LTR ERVL -253 262 112 2 1669 426 69 0 0 chr4 142175926 142175984 -13454136 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 2 1669 391 257 123 62 chr4 142176110 142176395 -13453725 + MTEb LTR MaLR 43 379 0 2 1669 258 32 0 0 chr4 142178017 142178048 -13452072 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1669 342 0 0 0 chr4 142178048 142178085 -13452035 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1669 387 41 0 0 chr4 142179807 142179856 -13450264 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1669 225 182 23 0 chr4 142180148 142180192 -13449928 + G-rich Low_complexity Low_complexity 4 48 0 2 1669 1143 181 5 0 chr4 142181304 142181492 -13448628 + B3 SINE B2 1 189 -27 2 1669 615 95 0 0 chr4 142181494 142181599 -13448521 + (CA)n Simple_repeat Simple_repeat 1 105 0 2 1669 260 276 58 37 chr4 142181643 142181831 -13448289 - L2a LINE L2 -190 3236 3045 2 1669 458 301 54 30 chr4 142181892 142182060 -13448060 - HAL1-2a_MD LINE L1 -497 2527 2356 2 1669 327 104 0 0 chr4 142182610 142182658 -13447462 + (CCCCAG)n Simple_repeat Simple_repeat 2 49 0 2 1669 1144 148 112 19 chr4 142182684 142182890 -13447230 + URR1A DNA MER1_type 2 226 0 2 1669 269 246 28 42 chr4 142184222 142184294 -13445826 - ORR1E LTR MaLR -288 71 1 2 1669 598 143 14 35 chr4 142184321 142184466 -13445654 + GA-rich Low_complexity Low_complexity 2 143 0 2 1669 706 258 60 6 chr4 142184534 142184717 -13445403 + MTE2b LTR MaLR 6 198 -181 2 1669 301 271 80 40 chr4 142184734 142184834 -13445286 + ID_B1 SINE B4 113 216 -8 2 1669 334 273 96 43 chr4 142184966 142185081 -13445039 - B3A SINE B2 -2 214 94 2 1669 2165 108 15 28 chr4 142185085 142185410 -13444710 + ORR1A4 LTR MaLR 1 321 -8 2 1669 434 213 13 0 chr4 142185416 142185491 -13444629 - B3 SINE B2 -135 81 6 2 1669 347 253 22 22 chr4 142185925 142186014 -13444106 - MTEb LTR MaLR -2 377 289 2 1669 411 257 10 29 chr4 142186015 142186119 -13444001 - PB1D10 SINE Alu -15 102 1 2 1669 501 97 0 0 chr4 142186394 142186466 -13443654 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1669 686 323 67 21 chr4 142186470 142186710 -13443410 - B4A SINE B4 -16 276 26 2 1669 233 258 15 15 chr4 142186729 142186796 -13443324 - B1F1 SINE Alu -9 140 74 2 1669 460 293 8 33 chr4 142186912 142187032 -13443088 + RSINE1 SINE B4 48 164 -1 2 1669 486 277 7 60 chr4 142188201 142188351 -13441769 + ID_B1 SINE B4 78 219 -5 2 1669 435 301 164 4 chr4 142188404 142188600 -13441520 + B4A SINE B4 1 222 -70 2 1669 504 0 0 0 chr4 142188600 142188656 -13441464 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1669 435 301 164 4 chr4 142188656 142188709 -13441411 + B4A SINE B4 223 289 -3 2 1669 202 325 0 11 chr4 142188717 142188786 -13441334 + (CATA)n Simple_repeat Simple_repeat 1 69 0 2 1669 306 73 0 0 chr4 142188786 142188827 -13441293 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1669 202 325 0 11 chr4 142188827 142188844 -13441276 + (CATA)n Simple_repeat Simple_repeat 2 18 0 2 1669 496 264 60 96 chr4 142189484 142189735 -13440385 - L1MA8 LINE L1 -22 6269 6028 2 1669 405 305 138 21 chr4 142189732 142190211 -13439909 + L1M2 LINE L1 4685 5219 -924 2 1669 4310 131 96 9 chr4 142190265 142190943 -13439177 + RMER19A LTR ERVK 1 737 0 2 1669 1341 124 3 6 chr4 142191062 142191411 -13438709 + (TCCA)n Simple_repeat Simple_repeat 1 348 0 2 1669 343 320 27 79 chr4 142191566 142191790 -13438330 - MIR SINE MIR -8 260 53 2 1669 434 290 78 92 chr4 142191884 142192165 -13437955 + B4 SINE B4 3 279 -13 2 1669 405 0 0 0 chr4 142193184 142193229 -13436891 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1669 422 79 16 0 chr4 142193345 142193408 -13436712 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3 1669 321 133 57 32 chr4 142193424 142193548 -13436572 + (TCTCTG)n Simple_repeat Simple_repeat 2 128 0 3 1669 396 0 0 0 chr4 142193553 142193597 -13436523 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1669 617 238 101 63 chr4 142193597 142193856 -13436264 - B4A SINE B4 -7 285 10 3 1669 298 366 101 18 chr4 142194190 142194407 -13435713 - MIR SINE MIR 0 262 28 3 1669 799 300 5 0 chr4 142194491 142194711 -13435409 + ID_B1 SINE B4 4 224 0 3 1669 378 0 0 0 chr4 142194744 142194786 -13435334 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1669 318 50 0 0 chr4 142194786 142194825 -13435295 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1669 240 259 207 12 chr4 142195440 142195469 -13434651 - B3 SINE B2 -6 210 183 3 1669 414 0 0 0 chr4 142195469 142195515 -13434605 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 1669 240 259 207 12 chr4 142195515 142195567 -13434553 - B3 SINE B2 -34 182 114 3 1669 351 0 0 0 chr4 142195652 142195691 -13434429 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1669 342 0 0 0 chr4 142195691 142195728 -13434392 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1669 334 339 85 11 chr4 142195746 142195939 -13434181 - L2a LINE L2 -270 3156 2945 3 1669 191 196 175 18 chr4 142197202 142197259 -13432861 - MIRm SINE MIR -87 189 124 3 1669 192 366 26 26 chr4 142197232 142197347 -13432773 - MIRb SINE MIR -118 150 36 3 1669 194 128 26 0 chr4 142197397 142197436 -13432684 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 3 1669 426 53 0 0 chr4 142197573 142197630 -13432490 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 3 1669 378 0 0 0 chr4 142199008 142199050 -13431070 + (CAA)n Simple_repeat Simple_repeat 3 44 0 3 1669 505 198 28 0 chr4 142199089 142199195 -13430925 + MER53 DNA hAT 1 109 -84 3 1669 277 308 19 117 chr4 142199353 142199515 -13430605 + RMER15 LTR ERVL 275 420 -155 3 1669 1818 202 0 0 chr4 142199519 142199831 -13430289 + Lx5 LINE L1 6408 6719 -331 3 1669 904 261 50 153 chr4 142199939 142200356 -13429764 + MTE2a LTR MaLR 1 374 -5 3 1669 250 281 65 46 chr4 142200488 142200596 -13429524 + MLT1I LTR MaLR 21 130 -314 3 1669 347 259 171 34 chr4 142200656 142200779 -13429341 + MLT1I LTR MaLR 212 336 -75 3 1669 180 0 0 0 chr4 142200779 142200799 -13429321 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1669 347 259 171 34 chr4 142200799 142200851 -13429269 + MLT1I LTR MaLR 337 410 -1 3 1669 457 288 71 0 chr4 142200965 142200989 -13429131 + MLT1A1 LTR MaLR 195 218 -190 3 1669 767 294 33 14 chr4 142200989 142201265 -13428855 + B4 SINE B4 3 283 -9 3 1669 457 288 71 0 chr4 142201265 142201438 -13428682 + MLT1A1 LTR MaLR 219 405 -3 3 1669 3309 57 0 12 chr4 142201496 142201908 -13428212 - MTB_Mm LTR MaLR 0 407 1 3 1669 308 223 82 31 chr4 142202159 142202256 -13427864 + L2 LINE L2 2787 2888 -531 3 1669 621 276 18 14 chr4 142202392 142202612 -13427508 - L1_Mur2 LINE L1 -2193 3684 3464 3 1669 1310 278 158 13 chr4 142202960 142203427 -13426693 - MLT1F LTR MaLR 0 548 14 3 1669 1976 147 102 0 chr4 142203548 142203881 -13426239 - ORR1B2 LTR MaLR 0 367 1 3 1669 356 179 13 0 chr4 142203923 142204001 -13426119 + CT-rich Low_complexity Low_complexity 2 80 0 3 1669 855 98 0 0 chr4 142204408 142204531 -13425589 + (TCC)n Simple_repeat Simple_repeat 2 124 0 3 1669 1207 55 0 14 chr4 142205486 142205634 -13424486 + B1_Mus1 SINE Alu 3 148 0 3 1669 200 81 0 101 chr4 142205634 142205703 -13424417 + (CAAA)n Simple_repeat Simple_repeat 1 62 0 3 1669 503 310 16 0 chr4 142205704 142205833 -13424287 - ID_B1 SINE B4 -13 211 81 3 1669 294 348 105 47 chr4 142206926 142207098 -13423022 - MER102a DNA MER1_type -1 329 148 3 1669 245 0 89 0 chr4 142207120 142207165 -13422955 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1669 327 25 0 0 chr4 142207183 142207223 -13422897 + (CAA)n Simple_repeat Simple_repeat 1 40 0 3 1669 649 245 71 25 chr4 142207700 142207855 -13422265 - B3 SINE B2 -6 210 55 3 1669 231 36 0 0 chr4 142207855 142207883 -13422237 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1669 649 245 71 25 chr4 142207883 142207924 -13422196 - B3 SINE B2 -162 54 6 3 1669 250 296 111 22 chr4 142208079 142208169 -13421951 - B4 SINE B4 -21 271 174 3 1669 466 198 0 0 chr4 142208218 142208299 -13421821 - B4 SINE B4 -208 84 4 3 1669 257 333 19 9 chr4 142209458 142209564 -13420556 + MIRb SINE MIR 18 124 -144 3 1669 545 224 37 7 chr4 142209676 142209811 -13420309 + B1F SINE Alu 2 140 -9 3 1669 371 247 0 0 chr4 142209827 142209908 -13420212 + ID4 SINE ID 2 82 -1 3 1669 272 296 8 17 chr4 142210516 142210633 -13419487 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 1669 720 89 0 0 chr4 142210636 142210737 -13419383 + (TATG)n Simple_repeat Simple_repeat 3 103 0 3 1669 2986 34 3 0 chr4 142210745 142211099 -13419021 + MTA_Mm LTR MaLR 41 395 -1 3 1669 591 112 0 0 chr4 142211104 142211193 -13418927 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 1669 624 219 32 16 chr4 142211504 142211629 -13418491 + B1_Mur1 SINE Alu 15 141 -8 3 1669 522 246 46 40 chr4 142212121 142212273 -13417847 - MER117 DNA MER1_type -26 171 19 3 1669 192 370 78 39 chr4 142212846 142213026 -13417094 - L2b LINE L2 -7 3368 3182 3 208 685 171 12 0 chr4 142213100 142213270 -13416850 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 1670 302 328 92 55 chr4 142213322 142213593 -13416527 - RMER12 LTR ERVK -364 958 678 3 1670 8933 102 21 7 chr4 142213595 142214894 -13415226 + Lx3C LINE L1 5672 7000 0 3 1670 627 201 18 0 chr4 142215319 142215488 -13414632 + CT-rich Low_complexity Low_complexity 1 172 0 3 1670 441 308 159 72 chr4 142215866 142216199 -13413921 + MLT2B4 LTR ERVL 18 379 -177 3 1670 313 262 190 35 chr4 142217562 142217736 -13412384 + HAL1-3A_ME LINE L1 2260 2460 -398 3 1670 205 156 0 0 chr4 142217736 142217768 -13412352 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1670 534 259 36 0 chr4 142218734 142218873 -13411247 + RSINE1 SINE B4 4 147 -18 3 1670 1132 238 145 15 chr4 142218993 142219330 -13410790 - MTD LTR MaLR -2 417 37 3 1670 640 240 150 12 chr4 142219902 142220075 -13410045 + B4 SINE B4 96 292 0 3 1670 287 365 18 18 chr4 142220441 142220550 -13409570 + LTR16C LTR ERVL 228 336 -153 3 1670 273 311 24 32 chr4 142220646 142220769 -13409351 - MLT1B LTR MaLR -7 383 262 3 1670 709 210 0 0 chr4 142220790 142220914 -13409206 - B3 SINE B2 0 216 93 3 1670 401 182 0 54 chr4 142220912 142221005 -13409115 + RMER17C LTR ERVK 323 410 0 3 1670 369 0 0 0 chr4 142221517 142221558 -13408562 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1670 297 0 0 0 chr4 142221558 142221590 -13408530 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1670 185 170 0 60 chr4 142222184 142222234 -13407886 + CT-rich Low_complexity Low_complexity 5 51 0 3 1670 1014 224 91 47 chr4 142222427 142222703 -13407417 + B4 SINE B4 5 292 0 3 1670 884 264 19 115 chr4 142223207 142223451 -13406669 + B4 SINE B4 1 216 -76 3 1670 310 0 67 0 chr4 142223451 142223496 -13406624 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1670 884 264 19 115 chr4 142223496 142223572 -13406548 + B4 SINE B4 217 290 -2 3 1670 667 273 86 43 chr4 142225016 142225295 -13404825 + B4 SINE B4 2 292 0 3 1670 576 222 0 0 chr4 142225364 142225661 -13404459 + (CA)n Simple_repeat Simple_repeat 1 297 0 3 1670 798 121 0 0 chr4 142225692 142225849 -13404271 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 1670 218 337 12 0 chr4 142226404 142226487 -13403633 - MER91A DNA Tip100 -112 84 1 3 1670 525 280 149 5 chr4 142226635 142226836 -13403284 + B4A SINE B4 1 230 -62 3 1670 501 298 46 29 chr4 142226836 142227116 -13403004 + B4A SINE B4 2 286 -6 3 1670 330 284 0 0 chr4 142227226 142227300 -13402820 + B4A SINE B4 216 289 -3 3 1670 1052 128 196 0 chr4 142227491 142227670 -13402450 + B3 SINE B2 3 216 0 3 1670 1038 244 35 113 chr4 142227757 142228127 -13401993 + MTEa LTR MaLR 39 379 0 3 1670 249 268 69 0 chr4 142228187 142228265 -13401855 + L2a LINE L2 3015 3103 -323 3 1670 254 95 0 23 chr4 142228734 142228777 -13401343 + (TCC)n Simple_repeat Simple_repeat 2 43 0 3 1670 276 284 178 23 chr4 142229732 142229938 -13400182 + MIR SINE MIR 3 243 -19 3 1670 477 0 0 0 chr4 142230044 142230097 -13400023 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1670 216 0 0 0 chr4 142230097 142230120 -13400000 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1670 822 292 85 20 chr4 142230731 142230979 -13399141 + B4A SINE B4 9 272 -20 3 1670 411 73 0 0 chr4 142230981 142231036 -13399084 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1670 280 330 101 34 chr4 142232403 142232610 -13397510 - MLT1K LTR MaLR -11 584 364 3 1670 187 175 0 136 chr4 142232808 142232874 -13397246 + MIRb SINE MIR 194 250 -18 3 1670 189 69 0 33 chr4 142232849 142232879 -13397241 + MIRm SINE MIR 232 260 -16 3 1670 214 111 111 0 chr4 142232958 142232994 -13397126 + L2b LINE L2 3317 3356 -19 3 1670 199 200 0 0 chr4 142232966 142233001 -13397119 + MIRb SINE MIR 226 260 -8 3 1670 1026 103 7 7 chr4 142233091 142233237 -13396883 + B1_Mur4 SINE Alu 4 149 -1 3 1670 207 0 0 0 chr4 142234064 142234087 -13396033 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1670 988 104 8 0 chr4 142234088 142234222 -13395898 - B1_Mus1 SINE Alu -12 136 2 3 1670 561 251 128 39 chr4 142235315 142235518 -13394602 + ID_B1 SINE B4 1 221 -3 3 1670 25 0 0 0 chr4 142235526 142235551 -13394569 + AT_rich Low_complexity Low_complexity 1 25 0 3 1670 1345 58 11 28 chr4 142235556 142235734 -13394386 + B2_Mm2 SINE B2 2 176 -19 3 1670 342 0 0 0 chr4 142235774 142235812 -13394308 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1670 528 16 0 0 chr4 142235812 142235872 -13394248 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1670 1121 256 42 8 chr4 142236868 142237132 -13392988 - MTEa LTR MaLR -106 273 1 4 1670 484 316 25 6 chr4 142238631 142238790 -13391330 + RSINE1 SINE B4 2 163 -2 4 1670 182 270 51 63 chr4 142238833 142238912 -13391208 + L2 LINE L2 525 602 -2817 4 1670 533 236 56 35 chr4 142239363 142239588 -13390532 - B4 SINE B4 -3 289 27 4 1670 400 264 0 17 chr4 142239934 142240115 -13390005 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 1670 217 320 60 60 chr4 142240230 142240313 -13389807 - B4A SINE B4 -119 173 91 4 1670 562 252 0 0 chr4 142240396 142240515 -13389605 - PB1D9 SINE Alu 0 120 2 4 1670 303 260 129 99 chr4 142240558 142240900 -13389220 - L1MEd LINE L1 -1518 4628 4277 4 1670 1139 213 14 0 chr4 142241017 142241224 -13388896 + B3 SINE B2 1 210 -6 4 1670 920 284 9 31 chr4 142241509 142241731 -13388389 + B4 SINE B4 42 258 -34 4 1670 378 0 0 0 chr4 142241731 142241773 -13388347 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1670 453 115 0 0 chr4 142241773 142241851 -13388269 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1670 647 168 6 0 chr4 142241846 142242013 -13388107 + (CA)n Simple_repeat Simple_repeat 2 169 0 4 1670 233 297 90 45 chr4 142242748 142242882 -13387238 - L1MEd LINE L1 -5357 779 640 4 1670 1042 239 15 0 chr4 142243041 142243246 -13386874 - B3 SINE B2 -1 215 8 4 1670 878 219 65 140 chr4 142243326 142243704 -13386416 - MTE2a LTR MaLR -34 345 7 4 1670 325 303 36 79 chr4 142244167 142244332 -13385788 + MTE-int LTR MaLR 146 303 -1277 4 1670 241 268 69 58 chr4 142244394 142244481 -13385639 + MLT2B4 LTR ERVL 322 409 -147 4 1670 324 48 0 0 chr4 142244587 142244629 -13385491 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4 1670 271 314 18 81 chr4 142244692 142244803 -13385317 + PB1D7 SINE Alu 15 118 -2 4 1670 432 0 0 0 chr4 142244851 142244899 -13385221 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1670 2364 90 12 58 chr4 142245564 142245907 -13384213 - ORR1A2 LTR MaLR 0 327 1 4 1670 1072 89 152 12 chr4 142246294 142246465 -13383655 - B2_Mm2 SINE B2 0 195 1 4 1670 827 275 38 11 chr4 142246478 142246765 -13383355 + L1_Mur3 LINE L1 4003 4297 -1583 4 1670 648 201 0 159 chr4 142247518 142247713 -13382407 + RSINE1 SINE B4 2 165 0 4 1670 333 45 0 22 chr4 142247713 142247759 -13382361 + HAL1-3A_ME LINE L1 1983 2027 -831 4 1670 280 259 37 123 chr4 142248839 142248891 -13381229 + MLT1A0 LTR MaLR 162 205 -160 4 1670 2021 181 44 10 chr4 142248891 142249298 -13380822 + MTC LTR MaLR 1 421 0 4 1670 280 259 37 123 chr4 142249298 142249408 -13380712 + MLT1A0 LTR MaLR 206 310 -55 4 1670 559 258 39 8 chr4 142249408 142249537 -13380583 + RSINE1 SINE B4 5 137 -28 4 1670 223 167 0 0 chr4 142249997 142250039 -13380081 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 4 1670 324 163 0 0 chr4 142250346 142250432 -13379688 + (TCTCTG)n Simple_repeat Simple_repeat 4 89 0 4 1670 359 77 0 55 chr4 142251407 142251462 -13378658 - HAL1-3A_ME LINE L1 -831 2027 1976 4 1670 652 291 159 0 chr4 142251473 142251724 -13378396 - B4A SINE B4 0 292 2 4 1670 457 336 180 6 chr4 142252340 142252657 -13377463 - MLT1A1 LTR MaLR -18 390 19 4 1670 450 0 0 0 chr4 142252830 142252880 -13377240 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1670 1951 162 56 3 chr4 142253176 142253517 -13376603 - ORR1B2 LTR MaLR -8 359 1 4 1670 23 0 0 0 chr4 142253587 142253610 -13376510 + AT_rich Low_complexity Low_complexity 1 23 0 4 1670 219 25 24 48 chr4 142253836 142253878 -13376242 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 1670 1321 214 120 3 chr4 142253920 142254211 -13375909 - MTE2b LTR MaLR -12 367 43 4 1670 498 337 6 0 chr4 142254320 142254483 -13375637 + MER20 DNA MER1_type 34 197 -22 4 1670 1075 234 5 0 chr4 142255310 142255524 -13374596 - ID_B1 SINE B4 -5 219 5 4 1670 351 0 0 0 chr4 142255555 142255594 -13374526 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1670 709 275 88 19 chr4 142255595 142255810 -13374310 - B4 SINE B4 -1 291 62 4 1670 1043 108 138 0 chr4 142256417 142256584 -13373536 + B2_Mm1t SINE B2 1 190 -3 4 1670 387 0 0 0 chr4 142256678 142256721 -13373399 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1670 471 341 170 37 chr4 142256726 142257208 -13372912 - LTR82A LTR ERVL -326 546 1 4 1670 681 142 0 0 chr4 142257448 142257561 -13372559 + (GAA)n Simple_repeat Simple_repeat 2 114 0 4 1670 265 291 78 0 chr4 142257568 142257671 -13372449 - Charlie23a DNA MER1_type -103 236 126 4 1670 297 241 0 0 chr4 142257699 142257753 -13372367 + tRNA-Ala-GCY_ tRNA tRNA 4 57 -18 4 1670 593 321 10 5 chr4 142257837 142258024 -13372096 + MLT2B2 LTR ERVL 22 209 -306 4 1670 505 292 17 0 chr4 142258024 142258144 -13371976 + B4A SINE B4 1 122 -170 4 1670 1353 81 17 6 chr4 142258158 142258333 -13371787 - B2_Mm2 SINE B2 -17 178 2 4 1670 395 239 64 0 chr4 142258688 142258797 -13371323 + MER20 DNA MER1_type 70 185 -34 4 1670 564 215 4 34 chr4 142258938 142259180 -13370940 + (TG)n Simple_repeat Simple_repeat 1 234 0 4 1670 495 285 0 51 chr4 142259246 142259383 -13370737 - B4 SINE B4 -63 229 100 4 1670 258 179 0 0 chr4 142259391 142259447 -13370673 + (CTA)n Simple_repeat Simple_repeat 2 57 0 4 1670 288 0 0 0 chr4 142259447 142259479 -13370641 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1670 198 0 0 0 chr4 142259479 142259500 -13370620 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1670 284 288 27 0 chr4 142260058 142260131 -13369989 + (CGTG)n Simple_repeat Simple_repeat 4 78 0 4 1670 185 353 34 45 chr4 142260133 142260222 -13369898 + L2c LINE L2 3263 3350 -37 4 1670 321 26 0 0 chr4 142260717 142260755 -13369365 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 4 1670 826 233 47 37 chr4 142260762 142260976 -13369144 - B3 SINE B2 0 216 1 4 1670 24 32 0 0 chr4 142260977 142261008 -13369112 + AT_rich Low_complexity Low_complexity 1 31 0 4 1670 472 265 181 12 chr4 142261027 142261275 -13368845 - B4A SINE B4 -1 291 2 4 1670 1973 131 80 101 chr4 142261288 142261530 -13368590 - MTC LTR MaLR -5 416 200 4 1670 1432 6 0 54 chr4 142261530 142261716 -13368404 - L1Md_F2 LINE L1 -2 6580 6405 4 1670 1973 131 80 101 chr4 142261716 142261898 -13368222 - MTC LTR MaLR -222 199 1 4 1670 243 0 0 0 chr4 142262499 142262526 -13367594 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1670 210 71 0 0 chr4 142262526 142262553 -13367567 + (CG)n Simple_repeat Simple_repeat 2 29 0 4 1670 539 258 182 0 chr4 142262578 142262710 -13367410 - B3A SINE B2 -38 160 5 4 1670 786 298 68 12 chr4 142262811 142263062 -13367058 + B4 SINE B4 7 271 -21 4 1670 1421 227 71 3 chr4 142263125 142263478 -13366642 + MTE2b LTR MaLR 3 379 0 4 1670 842 60 0 17 chr4 142263876 142263994 -13366126 + (TTCTC)n Simple_repeat Simple_repeat 4 119 0 4 1670 243 163 0 0 chr4 142264025 142264035 -13366085 + (TG)n Simple_repeat Simple_repeat 1 10 0 4 1670 255 61 0 0 chr4 142264035 142264068 -13366052 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1670 243 163 0 0 chr4 142264068 142264106 -13366014 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1670 630 264 57 13 chr4 142264183 142264340 -13365780 - B3 SINE B2 -6 210 47 4 1670 377 70 0 17 chr4 142264349 142264407 -13365713 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 4 1670 689 259 57 0 chr4 142264408 142264566 -13365554 - B4A SINE B4 -79 213 47 4 1670 252 0 0 0 chr4 142264963 142264991 -13365129 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1670 237 294 14 42 chr4 142265389 142265460 -13364660 - B4 SINE B4 -10 282 214 4 1670 228 60 19 57 chr4 142265463 142265516 -13364604 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 4 1670 533 164 104 19 chr4 142265532 142265638 -13364482 - PB1D9 SINE Alu -5 115 1 4 1670 880 236 26 48 chr4 142265639 142265870 -13364250 - B4 SINE B4 -66 226 1 4 1670 343 314 76 49 chr4 142265963 142266107 -13364013 + MIRb SINE MIR 21 168 -100 4 1670 252 122 0 0 chr4 142266229 142266270 -13363850 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1670 840 312 33 11 chr4 142266270 142266545 -13363575 - RMER15 LTR ERVL -15 560 280 4 1670 321 230 136 80 chr4 142266738 142266951 -13363169 + L1MA6 LINE L1 6071 6295 -5 4 1670 407 232 38 161 chr4 142267718 142267929 -13362191 + RMER5 LTR ERV1 15 199 -335 4 1670 207 125 0 0 chr4 142267932 142267972 -13362148 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1670 962 256 22 60 chr4 142267990 142268306 -13361814 + RMER5 LTR ERV1 216 519 -15 4 1670 465 285 82 31 chr4 142268897 142269193 -13360927 - L1ME2z LINE L1 -464 5980 5673 4 1670 595 262 19 45 chr4 142269387 142269543 -13360577 - RSINE1 SINE B4 -12 153 2 4 1670 261 312 12 0 chr4 142269623 142269703 -13360417 - ID4 SINE ID -1 82 2 4 1670 348 272 42 117 chr4 142269715 142269916 -13360204 - L1ME2z LINE L1 -777 5401 5205 4 1670 213 196 0 0 chr4 142269917 142269963 -13360157 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1670 837 222 85 5 chr4 142270024 142270223 -13359897 - ID_B1 SINE B4 -9 215 1 4 1670 371 297 161 25 chr4 142270223 142270766 -13359354 - L1ME2z LINE L1 -947 5199 4566 4 1670 1393 138 32 14 chr4 142271061 142271282 -13358838 + URR1B DNA MER1_type 1 225 0 4 1670 246 32 0 0 chr4 142271369 142271400 -13358720 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1670 404 281 43 17 chr4 142271525 142271641 -13358479 - B4A SINE B4 -172 120 2 4 1670 315 302 40 52 chr4 142271768 142271980 -13358140 - L1MC LINE L1 -2150 3996 3787 4 1670 428 282 45 0 chr4 142272057 142272071 -13358049 - B1F SINE Alu -22 127 13 4 1670 502 240 10 0 chr4 142272071 142272167 -13357953 - ID_B1 SINE B4 -34 190 94 4 1670 308 271 123 36 chr4 142272710 142272905 -13357215 - RMER1C Other Other -655 687 476 4 1670 348 83 0 0 chr4 142273127 142273175 -13356945 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1670 595 278 14 20 chr4 142273192 142273339 -13356781 - RSINE1 SINE B4 -19 146 1 5 1670 32 57 0 0 chr4 142273369 142273422 -13356698 + AT_rich Low_complexity Low_complexity 1 53 0 5 1670 326 211 0 38 chr4 142273809 142273888 -13356232 - PB1D10 SINE Alu -1 116 41 5 1670 683 145 9 9 chr4 142274272 142274383 -13355737 + B3 SINE B2 13 123 -93 5 1670 528 227 73 40 chr4 142274501 142274625 -13355495 - B4A SINE B4 -159 133 6 5 1670 243 0 0 0 chr4 142274750 142274777 -13355343 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1670 218 312 0 0 chr4 142275761 142275825 -13354295 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1670 585 240 128 1 chr4 142275844 142276027 -13354093 - B4 SINE B4 -7 285 77 5 1670 2028 72 76 64 chr4 142276027 142276341 -13353779 + ORR1A3 LTR MaLR 1 318 -8 5 1670 332 279 0 0 chr4 142276345 142276424 -13353696 - B4 SINE B4 -212 80 2 5 1670 236 77 26 0 chr4 142277307 142277346 -13352774 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1670 696 267 96 15 chr4 142277369 142277639 -13352481 - B4 SINE B4 0 292 1 5 1670 249 315 60 51 chr4 142277971 142278128 -13351992 - MIRb SINE MIR -105 171 14 5 1670 436 202 43 0 chr4 142278564 142278658 -13351462 + MLT2B4 LTR ERVL 1 98 -458 5 1670 854 239 105 23 chr4 142278777 142279043 -13351077 - RMER20B LTR ERVK -212 415 128 5 1670 1480 191 124 6 chr4 142279270 142279601 -13350519 + ORR1D2 LTR MaLR 1 370 0 5 1670 225 217 0 32 chr4 142279880 142279942 -13350178 - L1M LINE L1 -840 5400 5341 5 1670 523 276 19 19 chr4 142280286 142280441 -13349679 + B4A SINE B4 1 155 -137 5 1670 345 62 0 0 chr4 142280450 142280498 -13349622 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1670 278 294 0 0 chr4 142280555 142280623 -13349497 + B4A SINE B4 206 273 -19 5 1670 1540 0 0 9 chr4 142280967 142281199 -13348921 + (TTC)n Simple_repeat Simple_repeat 1 230 0 5 1670 519 138 0 0 chr4 142281199 142281286 -13348834 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 1670 286 306 32 16 chr4 142282051 142282174 -13347946 - PB1 SINE Alu 0 127 3 5 1670 1106 246 22 77 chr4 142282269 142282671 -13347449 + MTE2a LTR MaLR 1 364 -15 5 1670 1445 279 15 34 chr4 142283392 142283866 -13346254 + Lx9 LINE L1 7053 7517 -127 5 1670 588 182 13 26 chr4 142283866 142284018 -13346102 + (TATG)n Simple_repeat Simple_repeat 1 150 0 5 1670 189 107 0 0 chr4 142284060 142284088 -13346032 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1670 461 318 38 0 chr4 142284256 142284388 -13345732 + RSINE1 SINE B4 13 149 -16 5 1670 345 47 0 0 chr4 142284397 142284440 -13345680 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1670 608 245 38 31 chr4 142284533 142284693 -13345427 + RSINE1 SINE B4 4 164 -1 5 1670 252 0 0 0 chr4 142284702 142284730 -13345390 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1670 302 286 10 48 chr4 142284886 142284989 -13345131 + RMER4A LTR ERVK 8 106 -360 5 1670 201 171 0 24 chr4 142285260 142285302 -13344818 + CT-rich Low_complexity Low_complexity 4 44 0 5 1670 194 332 44 104 chr4 142285685 142285934 -13344186 - L2 LINE L2 -772 2647 2414 5 1670 1224 92 11 54 chr4 142285959 142286143 -13343977 + B2_Mm2 SINE B2 2 177 -18 5 1670 411 21 0 0 chr4 142286205 142286253 -13343867 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1670 752 128 8 0 chr4 142286253 142286386 -13343734 + (GA)n Simple_repeat Simple_repeat 2 135 0 5 1670 848 282 65 20 chr4 142286408 142286654 -13343466 - B4A SINE B4 0 292 36 5 1670 193 370 59 59 chr4 142286961 142287182 -13342938 - L2 LINE L2 -1178 2241 2021 5 1670 314 218 24 16 chr4 142287405 142287531 -13342589 + GA-rich Low_complexity Low_complexity 1 127 0 5 1670 1050 243 71 82 chr4 142288066 142288434 -13341686 + MTE2a LTR MaLR 1 364 -15 5 1670 291 300 11 0 chr4 142288483 142288573 -13341547 + MLT1J-int LTR MaLR 244 334 -1053 5 1670 544 289 0 8 chr4 142289931 142290060 -13340060 + B4 SINE B4 1 128 -164 5 1670 332 325 32 120 chr4 142290060 142290148 -13339972 + B3A SINE B2 1 198 0 5 1670 226 271 0 0 chr4 142290163 142290211 -13339909 + polypurine Low_complexity Low_complexity 4 51 0 5 1670 1172 186 28 5 chr4 142290861 142291072 -13339048 - B3 SINE B2 0 216 1 5 1670 4747 147 97 11 chr4 142291114 142291939 -13338181 - RMER19B LTR ERVK -6 896 1 5 1670 360 0 0 0 chr4 142292190 142292230 -13337890 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1670 905 252 40 91 chr4 142292235 142292510 -13337610 - B4 SINE B4 -30 262 2 5 1670 378 42 0 0 chr4 142293087 142293135 -13336985 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1670 331 301 147 107 chr4 142293435 142293632 -13336488 - B4 SINE B4 -7 285 81 5 1670 325 229 266 35 chr4 142293694 142293807 -13336313 - RSINE1 SINE B4 -26 139 1 5 1670 225 237 70 115 chr4 142293849 142294006 -13336114 - RMER20B LTR ERVK 0 627 478 5 1670 234 0 0 0 chr4 142294187 142294213 -13335907 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1670 234 0 0 0 chr4 142294875 142294901 -13335219 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1670 552 281 166 29 chr4 142295188 142295466 -13334654 + RMER5 LTR ERV1 2 317 -217 5 1670 24 0 0 0 chr4 142295590 142295614 -13334506 + AT_rich Low_complexity Low_complexity 1 24 0 5 1670 344 264 11 39 chr4 142295799 142295917 -13334203 + B3A SINE B2 1 117 -78 5 1670 442 222 22 18 chr4 142296233 142296351 -13333769 + B3A SINE B2 87 202 -14 5 1670 25 0 0 0 chr4 142296427 142296452 -13333668 + AT_rich Low_complexity Low_complexity 1 25 0 5 1670 324 322 32 27 chr4 142296604 142296792 -13333328 + L1MEc LINE L1 37 225 -6175 5 1670 844 261 15 5 chr4 142296910 142297110 -13333010 - ID_B1 SINE B4 -15 209 8 5 1670 246 298 32 11 chr4 142297636 142297731 -13332389 + L1MEc LINE L1 2651 2747 -3572 5 1670 1814 272 179 6 chr4 142297979 142298623 -13331497 + Lx8 LINE L1 6719 7473 0 5 1670 494 300 162 24 chr4 142298604 142299061 -13331059 + L1M5 LINE L1 2813 3332 -2814 5 1670 2054 124 83 21 chr4 142299064 142299402 -13330718 - ORR1B1 LTR MaLR -35 359 1 5 1670 273 337 0 0 chr4 142299426 142299509 -13330611 + CT-rich Low_complexity Low_complexity 2 84 0 5 1670 408 282 12 0 chr4 142299568 142299653 -13330467 - ID_B1 SINE B4 -25 199 114 5 1670 840 92 0 0 chr4 142299657 142299776 -13330344 + (TGGG)n Simple_repeat Simple_repeat 1 119 0 5 1670 4208 123 89 9 chr4 142299988 142300538 -13329582 - RMER19A LTR ERVK 0 737 150 5 1670 1195 68 7 0 chr4 142300538 142300685 -13329435 - B1_Mus1 SINE Alu 0 148 1 5 1670 4208 123 89 9 chr4 142300685 142300816 -13329304 - RMER19A LTR ERVK -588 149 2 5 1670 503 31 15 0 chr4 142301273 142301338 -13328782 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1670 307 271 39 59 chr4 142301432 142301534 -13328586 - PB1D7 SINE Alu -20 100 1 5 1670 541 323 35 18 chr4 142301534 142301613 -13328507 - B4A SINE B4 -209 83 2 5 1670 285 306 26 51 chr4 142301664 142301781 -13328339 + MLT1E1A LTR MaLR 21 134 -546 5 1670 503 69 14 0 chr4 142301813 142301885 -13328235 + (CCCCCT)n Simple_repeat Simple_repeat 2 74 0 5 1670 276 305 174 41 chr4 142301924 142302202 -13327918 + MLT1E1A LTR MaLR 327 607 -17 5 1670 370 328 70 62 chr4 142302219 142302463 -13327657 - L1ME3A LINE L1 -29 6144 5899 5 1670 535 262 156 45 chr4 142302465 142302753 -13327367 - ORR1E LTR MaLR 0 359 40 5 1670 1057 266 19 100 chr4 142302899 142303208 -13326912 + B4 SINE B4 9 292 0 5 1670 668 324 23 12 chr4 142303297 142303469 -13326651 - B3A SINE B2 -16 182 9 5 1670 289 272 11 11 chr4 142304451 142304544 -13325576 + (TTCA)n Simple_repeat Simple_repeat 3 95 0 5 1670 579 243 0 0 chr4 142304567 142304740 -13325380 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 5 1670 1928 144 100 9 chr4 142304775 142305104 -13325016 + ORR1B2 LTR MaLR 1 359 -8 5 1670 252 309 171 6 chr4 142305466 142305642 -13324478 - MIR SINE MIR -55 207 3 5 1670 477 0 0 0 chr4 142306197 142306250 -13323870 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1670 225 0 0 0 chr4 142306250 142306274 -13323846 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1670 965 242 201 28 chr4 142306959 142307282 -13322838 - MTE2b LTR MaLR 0 379 1 5 1670 255 162 54 0 chr4 142307295 142307369 -13322751 + CT-rich Low_complexity Low_complexity 1 78 0 5 1670 335 224 149 50 chr4 142307370 142307511 -13322609 - HAL1-3A_ME LINE L1 -419 2439 2285 5 1670 227 227 15 0 chr4 142307514 142307580 -13322540 + C-rich Low_complexity Low_complexity 2 68 0 5 1670 378 222 0 0 chr4 142308331 142308403 -13321717 - ORR1E LTR MaLR -235 124 53 5 1670 284 310 131 37 chr4 142308840 142309031 -13321089 - L1MC4 LINE L1 -201 7841 7633 5 1670 755 285 64 4 chr4 142309093 142309343 -13320777 - L1MC4 LINE L1 -566 7476 7212 5 1670 214 350 94 0 chr4 142309457 142309574 -13320546 + MIRm SINE MIR 31 158 -118 5 1670 1002 162 0 0 chr4 142310641 142310820 -13319300 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 5 1670 1012 220 0 62 chr4 142310827 142311069 -13319051 - Lx9 LINE L1 -467 7177 6951 5 1670 301 307 0 11 chr4 142311069 142311158 -13318962 + Lx9 LINE L1 7259 7346 -298 5 1670 1132 244 49 35 chr4 142311735 142312020 -13318100 - B4A SINE B4 -2 290 2 5 1670 400 327 114 60 chr4 142312035 142312351 -13317769 + MLT1A1 LTR MaLR 72 404 -4 5 1670 291 312 80 49 chr4 142313592 142313754 -13316366 - ORR1E LTR MaLR -169 190 24 5 1670 1067 226 70 22 chr4 142314000 142314272 -13315848 + B4A SINE B4 4 288 -4 5 1670 249 300 0 0 chr4 142314276 142314346 -13315774 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1670 198 359 21 42 chr4 142314849 142314945 -13315175 - MER5A DNA MER1_type -10 179 86 5 1670 526 257 33 53 chr4 142314968 142315120 -13315000 - B1F1 SINE Alu 0 149 1 5 1670 257 270 0 16 chr4 142315122 142315186 -13314934 - MER5A DNA MER1_type -114 75 13 5 1670 427 351 62 11 chr4 142315245 142315440 -13314680 + MTE2a LTR MaLR 1 201 -178 5 1670 238 320 9 104 chr4 142315592 142315707 -13314413 - Charlie4z DNA MER1_type -17 150 47 5 1670 242 349 105 10 chr4 142316168 142316288 -13313832 - L2b LINE L2 -7 3380 3225 6 1670 1714 214 91 3 chr4 142316388 142316762 -13313358 + MTD LTR MaLR 1 407 -12 6 1670 1698 222 52 13 chr4 142316775 142317163 -13312957 + MTD LTR MaLR 1 403 -16 6 1670 1486 204 40 102 chr4 142317179 142317583 -13312537 + MTEa LTR MaLR 1 379 0 6 1670 300 120 0 0 chr4 142318942 142318992 -13311128 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 6 1670 492 99 0 0 chr4 142320285 142320356 -13309764 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1670 332 268 33 44 chr4 142320389 142320479 -13309641 - B4 SINE B4 -4 288 200 6 1670 384 324 54 20 chr4 142320515 142320663 -13309457 - RSINE1 SINE B4 0 165 13 6 1670 1015 248 10 0 chr4 142320675 142320877 -13309243 + ID_B1 SINE B4 8 211 -13 6 1670 315 0 0 0 chr4 142320877 142320912 -13309208 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 6 1670 480 263 67 8 chr4 142322134 142322253 -13307867 + ID_B1 SINE B4 8 133 -91 6 1670 425 125 29 59 chr4 142322272 142322408 -13307712 + (TATG)n Simple_repeat Simple_repeat 1 132 0 6 1670 206 340 41 0 chr4 142322699 142322796 -13307324 + L2a LINE L2 3317 3417 -9 6 1670 325 275 57 44 chr4 142323596 142323746 -13306374 + MIRb SINE MIR 70 236 -32 6 1670 2696 47 9 6 chr4 142323797 142324145 -13305975 - IAPEY2_LTR LTR ERVK -8 403 1 6 1670 389 319 55 95 chr4 142324151 142324477 -13305643 - MLT1C LTR MaLR -28 439 127 6 1670 236 296 18 150 chr4 142324433 142324600 -13305520 + LTR50 LTR ERVL 9 153 -642 6 1670 261 318 146 0 chr4 142324992 142325102 -13305018 - ORR1E LTR MaLR -231 128 3 6 1670 627 318 28 0 chr4 142325239 142325418 -13304702 - B3A SINE B2 -14 184 1 6 1670 512 258 83 13 chr4 142325631 142325859 -13304261 + L1MC5 LINE L1 7682 7925 -36 6 1670 611 309 70 79 chr4 142325987 142326217 -13303903 + ORR1E LTR MaLR 1 228 -146 6 1670 244 323 7 71 chr4 142326303 142326443 -13303677 - LTR33A LTR ERVL -235 285 155 6 1670 341 243 101 87 chr4 142326388 142326537 -13303583 + ORR1E LTR MaLR 228 378 -1 6 1670 303 293 87 29 chr4 142326685 142326857 -13303263 + L1ME1 LINE L1 5769 5950 -229 6 1670 273 352 36 36 chr4 142326860 142327025 -13303095 + MER5A DNA MER1_type 14 178 -11 6 1670 502 333 6 6 chr4 142326892 142327049 -13303071 - MER5A DNA MER1_type -31 158 2 6 1670 897 331 28 0 chr4 142327170 142327454 -13302666 + B4A SINE B4 1 292 0 6 1670 214 211 19 19 chr4 142327462 142327515 -13302605 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1670 251 275 155 103 chr4 142327935 142328253 -13301867 - MLT1A1 LTR MaLR -17 348 19 6 1670 802 243 44 6 chr4 142328354 142328536 -13301584 + B3A SINE B2 4 192 -6 6 1670 664 276 136 36 chr4 142329548 142329856 -13300264 + ORR1D2 LTR MaLR 32 370 0 6 1670 1071 239 54 77 chr4 142330324 142330673 -13299447 + RLTR14 LTR ERV1 1 341 -41 6 1670 292 244 34 34 chr4 142330684 142330773 -13299347 - RSINE1 SINE B4 -53 112 24 6 1670 182 218 39 29 chr4 142330793 142330897 -13299223 + CT-rich Low_complexity Low_complexity 3 107 0 6 1670 567 43 0 0 chr4 142331028 142331098 -13299022 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1670 270 227 19 154 chr4 142331328 142331432 -13298688 + MLT1B LTR MaLR 1 90 -300 6 1670 335 264 47 31 chr4 142331505 142331634 -13298486 - RMER15 LTR ERVL -65 510 380 6 1670 371 268 70 16 chr4 142332310 142332439 -13297681 + MLT1B LTR MaLR 85 220 -170 6 1670 350 216 45 0 chr4 142332458 142332546 -13297574 + MLT1B LTR MaLR 293 384 -6 6 1670 214 314 0 0 chr4 142332651 142332702 -13297418 + polypurine Low_complexity Low_complexity 2 52 0 6 1670 446 0 19 0 chr4 142333768 142333822 -13296298 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1670 479 318 12 144 chr4 142333833 142333923 -13296197 - B4A SINE B4 -8 284 218 6 1670 793 258 91 0 chr4 142333923 142334121 -13295999 - B3 SINE B2 0 216 1 6 1670 479 318 12 144 chr4 142334121 142334357 -13295763 - B4A SINE B4 -75 217 1 6 1670 355 288 50 27 chr4 142334366 142334512 -13295608 - B1F1 SINE Alu -3 147 1 6 1670 288 0 0 0 chr4 142335870 142335902 -13294218 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 6 1670 200 319 14 0 chr4 142336821 142336890 -13293230 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 6 1670 442 324 29 0 chr4 142336913 142337086 -13293034 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 6 1670 279 114 0 0 chr4 142337183 142337227 -13292893 + (CCTG)n Simple_repeat Simple_repeat 1 44 0 6 1670 291 237 0 0 chr4 142337255 142337348 -13292772 + (TCCA)n Simple_repeat Simple_repeat 1 93 0 6 1670 1202 231 97 10 chr4 142338401 142338690 -13291430 + MTEa LTR MaLR 3 316 -63 6 1670 776 349 74 27 chr4 142338702 142339184 -13290936 + MLT1E2 LTR MaLR 132 622 -5 6 1670 219 246 53 0 chr4 142339320 142339377 -13290743 + ID4 SINE ID 1 60 -23 6 1670 735 287 83 8 chr4 142340464 142340717 -13289403 + B4A SINE B4 3 274 -18 6 1670 228 143 0 0 chr4 142340825 142340867 -13289253 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1670 229 328 0 32 chr4 142341575 142341599 -13288521 - B4A SINE B4 0 292 270 6 1670 333 0 0 0 chr4 142341599 142341636 -13288484 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1670 229 328 0 32 chr4 142341636 142341674 -13288446 - B4A SINE B4 -23 269 232 6 1670 623 247 147 47 chr4 142341693 142341884 -13288236 - B3 SINE B2 -5 211 2 6 1670 226 204 0 20 chr4 142341884 142341931 -13288189 - B4A SINE B4 -64 228 183 6 1670 378 223 48 51 chr4 142342152 142342264 -13287856 - B1F2 SINE Alu 0 149 33 6 1670 378 0 0 0 chr4 142342264 142342306 -13287814 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1670 453 156 0 0 chr4 142342306 142342402 -13287718 + (CA)n Simple_repeat Simple_repeat 2 97 0 6 1670 4774 146 66 24 chr4 142342601 142343467 -13286653 - RMER19B LTR ERVK 0 902 1 6 1670 259 370 6 55 chr4 142343915 142344078 -13286042 - MIR SINE MIR -73 189 35 6 1670 181 244 91 114 chr4 142344041 142344129 -13285991 - L4 LINE RTE -892 1137 1052 6 1671 291 311 146 0 chr4 142344593 142344696 -13285424 + L2 LINE L2 2959 3076 -343 6 1671 288 0 0 0 chr4 142345957 142345989 -13284131 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 6 1671 1215 188 5 0 chr4 142346859 142347066 -13283054 - B3 SINE B2 -7 209 2 6 1671 627 131 0 0 chr4 142347193 142347213 -13282907 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 6 1671 1197 56 0 0 chr4 142347213 142347356 -13282764 + B1_Mm SINE Alu 5 147 0 6 1671 627 131 0 0 chr4 142347356 142347442 -13282678 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 6 1671 356 282 10 19 chr4 142347448 142347577 -13282543 + L1_Mur1 LINE L1 4433 4572 -1314 6 1671 470 48 65 0 chr4 142347579 142347641 -13282479 + ORR1A3 LTR MaLR 253 318 -8 6 1671 2083 40 0 0 chr4 142347779 142348032 -13282088 - ORR1A2 LTR MaLR -74 253 1 6 1671 184 256 0 0 chr4 142348158 142348201 -13281919 - MIRb SINE MIR -178 90 48 6 1671 676 288 94 51 chr4 142348579 142348835 -13281285 + B4A SINE B4 1 267 -25 6 1671 297 75 0 0 chr4 142348875 142348915 -13281205 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1671 304 230 68 0 chr4 142349025 142349099 -13281021 - ID4 SINE ID 0 83 5 6 1671 222 259 95 69 chr4 142349342 142349458 -13280662 - MIRb SINE MIR -33 235 117 6 1671 239 330 11 11 chr4 142349601 142349696 -13280424 + CT-rich Low_complexity Low_complexity 3 97 0 6 1671 189 302 30 60 chr4 142350161 142350228 -13279892 + MIRb SINE MIR 26 90 -178 6 1671 780 251 68 10 chr4 142350850 142351055 -13279065 - MTEb LTR MaLR 0 379 163 6 1671 807 208 8 0 chr4 142351060 142351315 -13278805 + CT-rich Low_complexity Low_complexity 1 257 0 6 1671 862 215 23 0 chr4 142351315 142351487 -13278633 - MTEb LTR MaLR -203 176 1 6 1671 735 100 0 0 chr4 142352303 142352413 -13277707 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1671 354 168 20 0 chr4 142352435 142352498 -13277622 - Lx8 LINE L1 -578 7118 7051 6 1671 360 298 185 87 chr4 142352498 142352785 -13277335 + Lx8 LINE L1 7128 7442 -31 6 1671 251 266 0 15 chr4 142353097 142353162 -13276958 + B4 SINE B4 23 86 -206 6 1671 243 0 0 0 chr4 142353162 142353189 -13276931 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1671 878 293 5 0 chr4 142353189 142353397 -13276723 + B4A SINE B4 82 290 -2 6 1671 276 293 0 24 chr4 142353535 142353619 -13276501 + MTEb LTR MaLR 279 360 -19 6 1671 258 248 59 118 chr4 142353681 142353800 -13276320 + MT2B LTR ERVL 128 239 -362 6 1671 689 258 0 0 chr4 142353728 142353860 -13276260 + B1_Mur1 SINE Alu 13 144 -5 6 1671 1098 268 37 68 chr4 142354188 142354540 -13275580 - MTE2a LTR MaLR 0 379 39 6 1671 26 0 0 0 chr4 142355559 142355585 -13274535 + AT_rich Low_complexity Low_complexity 1 26 0 6 1671 744 254 49 89 chr4 142355632 142355800 -13274320 + B3 SINE B2 1 168 -48 6 1671 464 82 0 27 chr4 142355800 142355875 -13274245 + (CATA)n Simple_repeat Simple_repeat 2 74 0 6 1671 579 254 49 89 chr4 142355875 142355909 -13274211 + B2_Mm2 SINE B2 155 195 0 6 1671 1664 217 91 33 chr4 142356170 142356566 -13273554 + MTD LTR MaLR 1 419 0 6 1671 237 353 108 26 chr4 142356720 142356915 -13273205 + ORR1E LTR MaLR 44 254 -105 6 1671 1215 66 0 0 chr4 142357045 142357273 -13272847 + (CA)n Simple_repeat Simple_repeat 1 228 0 6 1671 305 291 0 0 chr4 142357476 142357555 -13272565 + ID4 SINE ID 1 79 -4 6 1671 297 0 0 0 chr4 142358063 142358096 -13272024 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1671 845 259 38 63 chr4 142358268 142358346 -13271774 + B4A SINE B4 1 73 -219 6 1671 468 0 0 0 chr4 142358346 142358398 -13271722 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1671 303 28 0 0 chr4 142358398 142358433 -13271687 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1671 845 259 38 63 chr4 142358433 142358581 -13271539 + B4A SINE B4 74 221 -71 6 1671 984 215 48 5 chr4 142358581 142358787 -13271333 + B3 SINE B2 2 216 0 6 1671 864 130 0 0 chr4 142358787 142358925 -13271195 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 6 1671 268 239 0 0 chr4 142358925 142358971 -13271149 + B4A SINE B4 237 282 -10 6 1671 223 341 0 0 chr4 142358979 142359061 -13271059 + (CATA)n Simple_repeat Simple_repeat 1 82 0 6 1671 792 261 111 17 chr4 142359707 142359941 -13270179 + B4A SINE B4 4 259 -33 7 1671 820 273 63 59 chr4 142360017 142360472 -13269648 + RMER15 LTR ERVL 1 538 -37 7 1671 293 116 0 0 chr4 142360479 142360522 -13269598 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1671 436 158 31 19 chr4 142360522 142360683 -13269437 + (TCTG)n Simple_repeat Simple_repeat 4 166 0 7 1671 209 306 0 0 chr4 142360683 142360745 -13269375 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1671 432 0 0 0 chr4 142360805 142360853 -13269267 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1671 263 322 16 73 chr4 142361808 142361932 -13268188 + L2a LINE L2 3308 3424 -2 7 1671 249 359 50 61 chr4 142361944 142362205 -13267915 - L2b LINE L2 -126 3249 2992 7 1671 468 239 155 40 chr4 142362332 142362356 -13267764 - RSINE1 SINE B4 0 165 142 7 1671 210 71 0 0 chr4 142362356 142362384 -13267736 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1671 468 239 155 40 chr4 142362384 142362507 -13267613 - RSINE1 SINE B4 -24 141 1 7 1671 476 291 109 71 chr4 142363771 142363990 -13266130 + B4A SINE B4 53 288 -4 7 1671 246 154 0 0 chr4 142364111 142364150 -13265970 + B4 SINE B4 252 290 -2 7 1671 1419 237 79 36 chr4 142364245 142364640 -13265480 - MTD LTR MaLR -19 400 5 7 1671 293 291 217 10 chr4 142365434 142365621 -13264499 + B4 SINE B4 2 227 -65 7 1671 510 170 10 29 chr4 142365619 142365722 -13264398 + PB1D9 SINE Alu 20 120 0 7 1671 318 338 77 53 chr4 142365620 142365789 -13264331 + B4 SINE B4 106 278 -14 7 1671 243 157 70 35 chr4 142365814 142365986 -13264134 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1671 665 148 11 28 chr4 142366002 142366182 -13263938 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1671 459 0 0 0 chr4 142366184 142366235 -13263885 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1671 279 0 0 0 chr4 142366235 142366265 -13263855 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1671 181 293 0 65 chr4 142366852 142366914 -13263206 + L2c LINE L2 3320 3377 -10 7 1671 714 198 112 25 chr4 142367375 142367572 -13262548 + RCHARR1 DNA MER1_type 761 974 0 7 1671 1041 272 90 87 chr4 142367623 142368013 -13262107 + MTD LTR MaLR 18 408 -11 7 1671 326 292 31 20 chr4 142368223 142368321 -13261799 - RLTR23 LTR ERV1 0 430 332 7 1671 228 35 0 0 chr4 142368587 142368616 -13261504 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1671 457 329 90 24 chr4 142369026 142369238 -13260882 + B4 SINE B4 4 229 -63 7 1671 570 182 32 32 chr4 142369261 142369386 -13260734 - B3 SINE B2 -89 127 3 7 1671 478 36 0 0 chr4 142369390 142369446 -13260674 - MTB LTR MaLR 0 400 345 7 1671 826 0 0 0 chr4 142369440 142369532 -13260588 - MTA_Mm LTR MaLR -304 92 1 7 1671 9231 36 4 1 chr4 142369532 142370627 -13259493 - MTA_Mm-int LTR MaLR 0 1098 1 7 1671 478 36 0 0 chr4 142370627 142370683 -13259437 - MTA_Mm LTR MaLR 0 400 345 7 1671 826 0 0 0 chr4 142370677 142370769 -13259351 - MTA_Mm LTR MaLR -304 92 1 7 1671 623 255 54 59 chr4 142370913 142371117 -13259003 - B3 SINE B2 0 216 14 7 1671 424 282 126 19 chr4 142371196 142371402 -13258718 - Lx7 LINE L1 -1880 5816 5589 7 1671 326 277 28 56 chr4 142371647 142371754 -13258366 + RMER12 LTR ERVK 750 853 -469 7 1671 446 230 0 0 chr4 142372365 142372452 -13257668 - MTEa LTR MaLR -9 370 284 7 1671 378 0 0 0 chr4 142372732 142372774 -13257346 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1671 239 336 21 78 chr4 142372864 142373006 -13257114 - MIRb SINE MIR -11 257 124 7 1671 681 300 64 34 chr4 142374129 142374364 -13255756 + MTD LTR MaLR 20 261 -158 7 1671 398 138 0 0 chr4 142374365 142374423 -13255697 - MERVL-int LTR ERVL -974 4511 4454 7 1671 460 306 20 13 chr4 142374429 142374578 -13255542 + MTD LTR MaLR 268 417 -2 7 1671 246 338 124 25 chr4 142374581 142374742 -13255378 - MER3 DNA MER1_type -18 191 15 7 1671 1232 233 88 45 chr4 142375962 142376062 -13254058 - MTE2a LTR MaLR -5 365 261 7 1671 3426 43 69 43 chr4 142376062 142376525 -13253595 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1671 1232 232 92 46 chr4 142376525 142376781 -13253339 - MTE2a LTR MaLR -119 260 1 7 1671 244 345 24 12 chr4 142377127 142377212 -13252908 + MIRc SINE MIR 81 166 -102 7 1671 778 240 30 98 chr4 142377288 142377491 -13252629 - B3A SINE B2 -9 189 1 7 1671 502 268 9 9 chr4 142378005 142378118 -13252002 + RSINE1 SINE B4 3 115 -50 7 1671 414 0 0 0 chr4 142378136 142378182 -13251938 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1671 261 0 0 0 chr4 142378182 142378210 -13251910 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1671 459 0 0 0 chr4 142378589 142378640 -13251480 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1671 703 297 67 22 chr4 142379477 142379746 -13250374 + LTR41B LTR ERVL 435 715 -43 7 1671 981 227 24 19 chr4 142379804 142380011 -13250109 + B3 SINE B2 3 210 -6 7 1671 246 32 0 0 chr4 142381019 142381050 -13249070 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1671 759 306 68 8 chr4 142382597 142382860 -13247260 + B4A SINE B4 2 280 -12 7 1671 342 0 0 0 chr4 142382863 142382901 -13247219 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1671 472 279 69 32 chr4 142383287 142383476 -13246644 - B3A SINE B2 0 198 3 7 1671 335 319 106 45 chr4 142383480 142383813 -13246307 - L1MC4 LINE L1 -4368 1847 1540 7 1671 542 281 70 32 chr4 142383815 142383973 -13246147 - B3A SINE B2 -7 191 28 7 1671 234 105 0 0 chr4 142383974 142384012 -13246108 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1671 870 77 17 0 chr4 142384012 142384129 -13245991 - PB1D9 SINE Alu 0 120 2 7 1671 829 146 13 53 chr4 142384358 142384510 -13245610 - B1_Mur4 SINE Alu 0 150 5 7 1671 222 37 0 0 chr4 142384618 142384645 -13245475 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1671 1162 95 0 0 chr4 142384651 142384798 -13245322 - B1_Mus2 SINE Alu 0 147 1 7 1671 218 296 131 34 chr4 142385450 142385575 -13244545 + MIRb SINE MIR 10 151 -111 7 1671 255 304 0 0 chr4 142385700 142385756 -13244364 - RSINE1 SINE B4 -107 58 3 7 1671 680 250 28 0 chr4 142386626 142386770 -13243350 + RSINE1 SINE B4 5 152 -13 7 1671 273 29 0 0 chr4 142386770 142386804 -13243316 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1671 189 0 0 0 chr4 142386804 142386824 -13243296 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 7 1671 201 94 0 0 chr4 142387331 142387363 -13242757 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 7 1671 223 326 56 42 chr4 142387605 142387749 -13242371 + L2 LINE L2 2482 2627 -792 7 1671 1120 247 19 15 chr4 142387764 142388027 -13242093 + B4A SINE B4 28 291 -1 7 1671 315 0 0 0 chr4 142388488 142388523 -13241597 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1671 708 302 73 19 chr4 142388565 142388771 -13241349 - B4A SINE B4 -69 223 7 7 1671 428 99 14 0 chr4 142389768 142389839 -13240281 + (GGA)n Simple_repeat Simple_repeat 3 74 0 7 1671 348 329 50 7 chr4 142390182 142390323 -13239797 + Charlie1 DNA MER1_type 7 153 -2628 7 1671 1151 233 90 29 chr4 142390587 142390940 -13239180 + MTD LTR MaLR 9 405 -14 7 1671 454 224 0 0 chr4 142392268 142392353 -13237767 - RLTR18B LTR ERVK -3 509 425 7 1671 219 36 0 0 chr4 142393542 142393570 -13236550 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 7 1671 235 250 171 0 chr4 142393572 142393660 -13236460 + MER96B DNA hAT 71 173 -244 7 1671 366 312 48 35 chr4 142394212 142394501 -13235619 + L1ME4a LINE L1 5595 5887 -237 7 1671 183 42 0 0 chr4 142395059 142395083 -13235037 + (GGAAA)n Simple_repeat Simple_repeat 2 25 0 7 1671 330 286 0 16 chr4 142395175 142395208 -13234912 + polypurine Low_complexity Low_complexity 2 34 0 7 1671 1066 51 72 0 chr4 142395208 142395346 -13234774 + B1_Mus1 SINE Alu 1 148 0 7 1671 330 286 0 16 chr4 142395346 142395433 -13234687 + GA-rich Low_complexity Low_complexity 35 120 0 7 1671 645 243 61 22 chr4 142395448 142395629 -13234491 + RMER15 LTR ERVL 312 499 -76 7 1671 387 0 0 0 chr4 142395631 142395674 -13234446 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1671 531 252 24 55 chr4 142396507 142396671 -13233449 + RSINE1 SINE B4 3 161 -4 7 1671 1048 90 7 20 chr4 142396710 142396845 -13233275 + B1_Mus1 SINE Alu 1 135 -13 7 1671 183 42 0 0 chr4 142396845 142396869 -13233251 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1671 1048 90 7 20 chr4 142396869 142396880 -13233240 + B1_Mus1 SINE Alu 136 145 -3 7 1671 229 186 53 79 chr4 142397314 142397390 -13232730 + MLT1J1 LTR MaLR 356 429 -15 7 1671 333 259 25 0 chr4 142397510 142397591 -13232529 + ID4_ SINE ID 1 83 0 7 1671 467 256 172 32 chr4 142397756 142397942 -13232178 - B3 SINE B2 -1 215 4 7 1671 770 230 6 24 chr4 142399069 142399234 -13230886 - RSINE1 SINE B4 -1 164 3 7 1671 573 286 29 0 chr4 142400156 142400296 -13229824 + B1F SINE Alu 1 144 -5 7 1671 232 289 48 0 chr4 142400724 142400807 -13229313 + GA-rich Low_complexity Low_complexity 4 90 0 7 1671 1581 223 39 14 chr4 142400831 142400994 -13229126 + ORR1D1 LTR MaLR 2 175 -199 7 1671 1009 63 7 7 chr4 142400994 142401137 -13228983 + (TCTCCC)n Simple_repeat Simple_repeat 3 145 0 7 1671 1581 223 39 14 chr4 142401137 142401337 -13228783 + ORR1D1 LTR MaLR 176 374 0 7 1671 1152 203 15 10 chr4 142401534 142401738 -13228382 + B3 SINE B2 6 210 -6 7 1671 722 287 34 50 chr4 142402838 142403113 -13227007 + B4 SINE B4 1 272 -20 7 1671 352 0 42 0 chr4 142403113 142403161 -13226959 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1671 722 287 34 50 chr4 142403161 142403182 -13226938 + B4 SINE B4 273 291 -1 7 1671 322 351 20 26 chr4 142403441 142403593 -13226527 - MIRc SINE MIR -106 162 12 7 1671 1077 141 23 0 chr4 142404408 142404585 -13225535 + ORR1D1 LTR MaLR 1 181 -193 7 1671 486 245 0 0 chr4 142404587 142404738 -13225382 + CT-rich Low_complexity Low_complexity 2 152 0 7 1671 1029 198 39 15 chr4 142404740 142404945 -13225175 + ORR1D1 LTR MaLR 175 384 0 7 1671 305 305 36 94 chr4 142405207 142405399 -13224721 - HAL1 LINE L1 -1483 1024 844 7 1671 942 210 1 31 chr4 142405804 142406030 -13224090 - B3A SINE B2 -8 208 2 8 1671 620 282 47 16 chr4 142407130 142407321 -13222799 + B3 SINE B2 2 198 -18 8 1671 226 125 42 0 chr4 142407328 142407376 -13222744 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 8 1671 810 253 114 20 chr4 142407472 142407718 -13222402 - B4A SINE B4 -23 269 1 8 1671 297 292 49 97 chr4 142407718 142407853 -13222267 + LTR33B LTR ERVL 33 160 -343 8 1671 910 210 53 5 chr4 142408063 142408269 -13221851 + B3 SINE B2 1 216 0 8 1671 315 0 0 0 chr4 142408366 142408401 -13221719 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1671 956 296 23 8 chr4 142408405 142408667 -13221453 - B4 SINE B4 -26 266 1 8 1671 228 259 58 144 chr4 142408677 142408781 -13221339 - MLT1H2 LTR MaLR -15 474 380 8 1671 249 179 43 18 chr4 142409116 142409173 -13220947 + MIRm SINE MIR 83 154 -122 8 1671 273 208 166 17 chr4 142409140 142409239 -13220881 + MIRc SINE MIR 119 225 -43 8 1671 735 145 137 0 chr4 142409960 142410091 -13220029 + URR1A DNA MER1_type 78 226 0 8 1671 818 300 85 13 chr4 142410275 142410592 -13219528 + Lx9 LINE L1 7120 7459 -185 8 1671 216 0 0 0 chr4 142410592 142410616 -13219504 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1671 238 341 37 7 chr4 142410616 142410668 -13219452 + Lx8 LINE L1 7331 7387 -86 8 1671 210 273 18 0 chr4 142410900 142410955 -13219165 + ID4_ SINE ID 19 74 -9 8 1671 770 179 123 47 chr4 142410910 142411080 -13219040 + B3 SINE B2 34 216 0 8 1671 1106 188 9 27 chr4 142411110 142411329 -13218791 + B3 SINE B2 1 215 -1 8 1671 547 252 32 0 chr4 142411336 142411459 -13218661 + RSINE1 SINE B4 3 129 -36 8 1671 216 0 0 0 chr4 142411485 142411509 -13218611 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 8 1671 336 24 0 0 chr4 142411808 142411849 -13218271 + (CCTG)n Simple_repeat Simple_repeat 3 43 0 8 1671 411 308 0 0 chr4 142412230 142412489 -13217631 + (CA)n Simple_repeat Simple_repeat 1 259 0 8 1671 321 328 67 33 chr4 142412819 142412939 -13217181 - MER20 DNA MER1_type 0 219 96 8 1671 337 330 25 25 chr4 142412941 142413062 -13217058 + B3 SINE B2 28 148 -68 8 1671 475 235 182 57 chr4 142413108 142413255 -13216865 - MTE2a LTR MaLR -14 365 190 8 1671 276 30 0 0 chr4 142413255 142413288 -13216832 + (CTTG)n Simple_repeat Simple_repeat 1 33 0 8 1671 475 235 182 57 chr4 142413288 142413316 -13216804 - MTE2a LTR MaLR -190 189 168 8 1671 285 280 58 29 chr4 142413322 142413425 -13216695 - B3 SINE B2 0 216 111 8 1671 1017 164 48 44 chr4 142413432 142413681 -13216439 + RMER17B LTR ERVK 190 439 -519 8 1671 718 165 0 0 chr4 142413686 142413795 -13216325 - B3A SINE B2 -88 110 2 8 1671 588 289 4 142 chr4 142413795 142414005 -13216115 - MTE2a LTR MaLR -200 179 1 8 1671 638 238 80 16 chr4 142414113 142414301 -13215819 - RMER30 DNA MER1_type -2 200 1 8 1671 241 245 31 21 chr4 142415055 142415151 -13214969 + GA-rich Low_complexity Low_complexity 2 98 0 8 1671 991 208 172 29 chr4 142415179 142415452 -13214668 + ORR1E LTR MaLR 39 350 -9 8 1671 468 0 0 0 chr4 142416153 142416205 -13213915 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1671 303 28 0 0 chr4 142416917 142416953 -13213167 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1671 791 249 23 0 chr4 142417034 142417211 -13212909 + B3A SINE B2 5 185 -13 8 1671 439 170 10 10 chr4 142417790 142417891 -13212229 + GA-rich Low_complexity Low_complexity 2 102 0 8 1671 233 203 0 101 chr4 142418133 142418169 -13211951 + B1F SINE Alu 55 120 -29 8 1671 1549 182 96 34 chr4 142418169 142418283 -13211837 - RMER17C LTR ERVK 0 410 270 8 1671 378 0 0 0 chr4 142418283 142418325 -13211795 + (ACTAG)n Simple_repeat Simple_repeat 5 46 0 8 1671 1549 182 96 34 chr4 142418325 142418596 -13211524 - RMER17C LTR ERVK -141 269 2 8 1671 233 196 0 97 chr4 142418596 142418630 -13211490 + B1F SINE Alu 121 149 0 8 1671 324 70 0 0 chr4 142418634 142418677 -13211443 + (GGA)n Simple_repeat Simple_repeat 1 43 0 8 1671 484 286 93 57 chr4 142420181 142420374 -13209746 - RMER30 DNA MER1_type -2 200 1 8 1671 405 0 0 0 chr4 142420601 142420646 -13209474 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1671 360 281 0 0 chr4 142421204 142421382 -13208738 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1671 438 306 7 0 chr4 142421400 142421671 -13208449 + (TG)n Simple_repeat Simple_repeat 1 273 0 8 1671 974 258 31 28 chr4 142421673 142421964 -13208156 - B4A SINE B4 0 292 1 8 1671 260 282 219 33 chr4 142422403 142422586 -13207534 + MLT1G3 LTR MaLR 51 267 -328 8 1671 1449 266 34 3 chr4 142422595 142422945 -13207175 + MTEa LTR MaLR 1 361 -18 8 1671 1179 156 5 8 chr4 142423038 142423440 -13206680 + (TCCA)n Simple_repeat Simple_repeat 1 400 0 8 1671 784 200 51 61 chr4 142423553 142423750 -13206370 + B3A SINE B2 2 196 -2 8 1671 248 371 79 19 chr4 142423797 142424011 -13206109 + MLT1G3 LTR MaLR 357 583 -8 8 1671 1540 181 167 9 chr4 142424095 142424418 -13205702 - ORR1D1 LTR MaLR 0 374 1 8 1671 594 219 29 20 chr4 142425446 142425626 -13204494 + L1MB5 LINE L1 5680 5867 -316 8 1671 229 306 45 27 chr4 142425788 142425899 -13204221 + L1MB5 LINE L1 6016 6128 -46 8 1671 244 48 23 23 chr4 142425943 142425986 -13204134 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 8 1671 438 294 29 10 chr4 142426082 142426185 -13203935 + RSINE1 SINE B4 53 157 -8 8 1671 240 35 0 0 chr4 142426185 142426214 -13203906 + (CATG)n Simple_repeat Simple_repeat 4 32 0 8 1671 435 38 0 0 chr4 142427005 142427058 -13203062 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1671 210 71 0 0 chr4 142427151 142427179 -13202941 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1671 991 304 29 11 chr4 142427182 142427458 -13202662 - B4 SINE B4 -4 288 8 8 1671 3056 167 108 12 chr4 142427448 142428024 -13202096 + RMER19B LTR ERVK 266 896 -6 8 1671 231 36 0 0 chr4 142428724 142428752 -13201368 + (CTGGGG)n Simple_repeat Simple_repeat 2 29 0 8 1671 1037 240 161 11 chr4 142428896 142429182 -13200938 - MTD LTR MaLR -90 329 1 8 1671 853 290 42 31 chr4 142429829 142430117 -13200003 - B4A SINE B4 0 292 2 8 1671 584 275 173 6 chr4 142430681 142430860 -13199260 + B4A SINE B4 1 209 -83 8 1671 897 207 49 0 chr4 142430911 142431075 -13199045 + B3A SINE B2 1 172 -26 8 1671 533 79 52 9 chr4 142431084 142431199 -13198921 + (CA)n Simple_repeat Simple_repeat 2 121 0 8 1671 280 349 126 38 chr4 142431199 142431287 -13198833 + B4A SINE B4 204 284 -8 8 1671 432 0 0 0 chr4 142431296 142431344 -13198776 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1671 202 243 149 0 chr4 142431356 142431430 -13198690 + MIRc SINE MIR 67 151 -117 8 1671 312 241 52 10 chr4 142431751 142431850 -13198270 - MLT-int LTR MaLR -1 1734 1651 8 1671 514 282 111 33 chr4 142431857 142432128 -13197992 + B4A SINE B4 1 292 0 8 1671 369 236 12 15 chr4 142432215 142432334 -13197786 - MTE2a LTR MaLR 0 419 302 8 1671 410 274 0 57 chr4 142432422 142432546 -13197574 + PB1D10 SINE Alu 1 117 0 8 1671 494 331 136 38 chr4 142432708 142433207 -13196913 + MLT1F LTR MaLR 1 548 0 8 1671 513 339 117 38 chr4 142433208 142433601 -13196519 + MLT1F-int LTR MaLR 1 424 -1065 8 1671 727 335 122 47 chr4 142433626 142434030 -13196090 + MLT1F-int LTR MaLR 890 1336 -153 8 1671 261 75 0 0 chr4 142434030 142434070 -13196050 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1671 727 335 122 47 chr4 142434070 142434223 -13195897 + MLT1F-int LTR MaLR 1337 1489 0 8 1671 836 231 19 43 chr4 142434391 142434599 -13195521 - ID_B1 SINE B4 -21 203 1 8 1671 298 229 117 68 chr4 142434599 142434700 -13195420 + MLT1F LTR MaLR 173 278 -270 8 1671 387 350 37 62 chr4 142435013 142435254 -13194866 + MLT1F LTR MaLR 334 568 -1 8 1671 766 251 64 0 chr4 142435675 142435846 -13194274 + B3A SINE B2 4 185 -13 8 1671 523 193 0 0 chr4 142435937 142436046 -13194074 - L1_Mur3 LINE L1 -1833 4047 3939 8 1671 3829 240 50 49 chr4 142436056 142436284 -13193836 + Lx8 LINE L1 4711 4942 -938 8 1671 183 42 0 0 chr4 142436284 142436308 -13193812 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1671 3829 266 66 36 chr4 142436308 142438286 -13191834 + Lx8 LINE L1 4943 6986 -487 8 1671 590 279 137 0 chr4 142438276 142438414 -13191706 + Lx8 LINE L1 7188 7338 -135 8 1671 279 0 0 0 chr4 142438414 142438445 -13191675 + (TTG)n Simple_repeat Simple_repeat 2 32 0 8 1671 590 279 137 0 chr4 142438445 142438532 -13191588 + Lx8 LINE L1 7339 7443 -30 8 1671 22 0 0 0 chr4 142440297 142440319 -13189801 + AT_rich Low_complexity Low_complexity 1 22 0 8 1671 677 288 68 10 chr4 142440342 142440549 -13189571 - B4A SINE B4 -72 220 2 8 1671 1019 256 5 33 chr4 142440842 142441056 -13189064 + B4 SINE B4 9 216 -76 8 1671 604 169 0 0 chr4 142441052 142441141 -13188979 + B1_Mur1 SINE Alu 25 113 -36 8 1671 288 211 0 0 chr4 142441132 142441184 -13188936 + B4 SINE B4 161 212 -80 8 1671 771 142 33 16 chr4 142441185 142441307 -13188813 + B1_Mur2 SINE Alu 26 149 0 8 1671 577 268 26 4 chr4 142441311 142441485 -13188635 + B3A SINE B2 39 216 0 8 1671 1144 117 5 22 chr4 142441490 142441674 -13188446 - B2_Mm2 SINE B2 -7 188 8 8 1671 360 294 73 0 chr4 142442099 142442208 -13187912 - ORR1E LTR MaLR 0 359 243 8 1671 1182 228 122 55 chr4 142442208 142442551 -13187569 - ORR1D2 LTR MaLR 0 370 5 8 1671 645 272 22 116 chr4 142442565 142442741 -13187379 - ORR1E LTR MaLR -108 251 102 8 1671 1233 167 27 27 chr4 142442741 142442962 -13187158 - URR1B DNA MER1_type -4 221 1 8 1671 645 272 22 116 chr4 142442962 142443060 -13187060 - ORR1E LTR MaLR -258 101 3 8 1671 927 169 0 0 chr4 142443398 142443575 -13186545 + CT-rich Low_complexity Low_complexity 1 177 0 8 1671 258 250 0 42 chr4 142444352 142444423 -13185697 + GA-rich Low_complexity Low_complexity 5 72 0 8 1671 774 227 18 6 chr4 142444493 142444657 -13185463 - B4A SINE B4 0 292 127 8 1671 293 334 7 115 chr4 142444657 142444803 -13185317 - B4A SINE B4 -67 157 27 8 1671 230 341 22 79 chr4 142444807 142444896 -13185224 + B3 SINE B2 108 191 -25 8 1671 546 310 152 20 chr4 142445598 142445848 -13184272 - B4A SINE B4 -8 284 2 8 1671 527 246 129 7 chr4 142445887 142446026 -13184094 + RSINE1 SINE B4 2 157 -8 8 1671 810 58 0 0 chr4 142446043 142446147 -13183973 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 8 1671 800 215 0 0 chr4 142446252 142446396 -13183724 - B3 SINE B2 -70 146 3 8 1671 405 301 42 74 chr4 142447227 142447442 -13182678 - MIRb SINE MIR -11 257 50 8 1671 548 351 53 50 chr4 142447877 142448159 -13181961 - B4 SINE B4 -8 284 2 8 1671 189 107 0 0 chr4 142448200 142448228 -13181892 + (GAA)n Simple_repeat Simple_repeat 2 29 0 8 1671 919 104 11 39 chr4 142448225 142448405 -13181715 + GA-rich Low_complexity Low_complexity 2 176 0 9 1671 229 354 15 45 chr4 142449824 142449957 -13180163 + MLT1A1 LTR MaLR 4 132 -276 9 1671 221 260 0 0 chr4 142449999 142450049 -13180071 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 9 1671 334 312 70 82 chr4 142450351 142450522 -13179598 + ORR1E LTR MaLR 80 248 -111 9 1671 224 262 0 0 chr4 142450973 142451015 -13179105 - MIR SINE MIR -187 75 34 9 1671 1937 144 9 63 chr4 142451876 142452224 -13177896 + ORR1A4 LTR MaLR 1 329 0 9 1671 425 333 48 84 chr4 142452959 142453270 -13176850 - ORR1E LTR MaLR -59 300 1 9 1671 1113 206 10 14 chr4 142453337 142453544 -13176576 - B3 SINE B2 0 216 11 9 1671 369 357 88 31 chr4 142453544 142453804 -13176316 - Helitron2Na_Mam RC Helitron? -43 281 7 9 1671 210 105 0 0 chr4 142454306 142454344 -13175776 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 9 1671 387 60 0 0 chr4 142454400 142454450 -13175670 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1671 404 308 0 8 chr4 142454990 142455124 -13174996 - B4A SINE B4 0 292 160 9 1671 1439 243 34 53 chr4 142455138 142455494 -13174626 + ORR1E LTR MaLR 9 357 -2 9 1671 288 0 0 0 chr4 142455509 142455541 -13174579 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 9 1671 272 299 13 13 chr4 142455557 142455635 -13174485 - B4A SINE B4 -199 93 16 9 1671 589 312 33 22 chr4 142456111 142456291 -13173829 + B3A SINE B2 1 182 -16 9 1671 198 0 0 0 chr4 142456305 142456327 -13173793 + (CAA)n Simple_repeat Simple_repeat 2 23 0 9 1671 189 0 0 0 chr4 142456589 142456610 -13173510 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1671 180 0 0 0 chr4 142456875 142456895 -13173225 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 1671 438 248 42 78 chr4 142456906 142457072 -13173048 - B3A SINE B2 0 198 39 9 1671 730 201 131 22 chr4 142457105 142457288 -13172832 - B3 SINE B2 -13 203 1 9 1671 203 0 0 36 chr4 142457505 142457533 -13172587 + (TTG)n Simple_repeat Simple_repeat 2 28 0 9 1671 1633 256 19 14 chr4 142457565 142457934 -13172186 - MTEa LTR MaLR -8 371 1 9 1671 342 80 0 0 chr4 142458374 142458424 -13171696 + (TCTG)n Simple_repeat Simple_repeat 4 53 0 9 1671 648 312 16 70 chr4 142459076 142459334 -13170786 + MLT1B LTR MaLR 108 351 -39 9 1671 2309 113 112 9 chr4 142459346 142459531 -13170589 - ORR1C2 LTR MaLR 0 384 174 9 1671 1515 60 6 0 chr4 142459531 142459848 -13170272 + (GGGAGA)n Simple_repeat Simple_repeat 1 318 0 9 1671 2309 113 112 9 chr4 142459848 142460009 -13170111 - ORR1C2 LTR MaLR -211 173 2 9 1671 369 0 0 0 chr4 142460446 142460487 -13169633 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1671 334 224 105 0 chr4 142461518 142461594 -13168526 + RLTR17 LTR ERVK 1 84 -608 9 1671 1329 170 26 9 chr4 142461595 142461826 -13168294 + RLTR17 LTR ERVK 224 458 -234 9 1671 220 125 0 24 chr4 142462097 142462138 -13167982 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1671 476 198 11 11 chr4 142462602 142462689 -13167431 + B3 SINE B2 1 87 -129 9 1671 428 272 190 6 chr4 142462978 142463152 -13166968 + B4 SINE B4 1 206 -86 9 1671 261 0 0 0 chr4 142463194 142463223 -13166897 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1671 1469 209 84 36 chr4 142463711 142464068 -13166052 + ORR1D1 LTR MaLR 1 374 0 9 1671 807 274 80 154 chr4 142464112 142464560 -13165560 - MTD LTR MaLR 0 419 5 9 1671 301 339 0 18 chr4 142464898 142465009 -13165111 + MIRb SINE MIR 113 221 -47 9 1671 862 249 127 23 chr4 142465609 142465868 -13164252 + B4 SINE B4 3 288 -4 9 1671 328 338 25 94 chr4 142466646 142466745 -13163375 + RSINE1 SINE B4 3 93 -72 9 1671 1981 53 8 0 chr4 142466745 142466992 -13163128 - L1_Mus1 LINE L1 0 6567 6319 9 1671 328 338 25 94 chr4 142466992 142467052 -13163068 + RSINE1 SINE B4 94 151 -14 9 1671 201 277 15 30 chr4 142467082 142467149 -13162971 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1671 624 311 50 15 chr4 142467382 142467584 -13162536 + B4 SINE B4 1 209 -83 9 1671 954 268 14 41 chr4 142467594 142467904 -13162216 + ID_B1 SINE B4 6 292 0 9 1671 413 198 0 9 chr4 142467904 142468011 -13162109 + (CA)n Simple_repeat Simple_repeat 1 106 0 9 1671 1215 89 0 0 chr4 142468087 142468244 -13161876 + B2_Mm2 SINE B2 2 158 -37 9 1671 279 0 0 0 chr4 142468245 142468276 -13161844 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 9 1671 1036 178 29 38 chr4 142468671 142468881 -13161239 + RMER4A LTR ERVK 208 415 -51 9 1671 384 261 35 111 chr4 142468912 142469084 -13161036 + MLT1A LTR MaLR 4 162 -212 9 1671 186 189 0 0 chr4 142469085 142469122 -13160998 + GA-rich Low_complexity Low_complexity 1 37 0 9 1671 1521 224 88 40 chr4 142469142 142469495 -13160625 - MTEa LTR MaLR -9 370 1 9 1671 339 254 27 2 chr4 142469515 142469606 -13160514 + MLT1A LTR MaLR 274 367 -23 9 1671 526 63 0 12 chr4 142470920 142471000 -13159120 + L1_Mus2 LINE L1 6488 6566 0 9 1671 412 281 35 0 chr4 142471174 142471312 -13158808 + MIRb SINE MIR 33 182 -86 9 1671 916 216 18 0 chr4 142471598 142471769 -13158351 + B3A SINE B2 1 174 -24 9 1671 675 67 0 0 chr4 142471784 142471873 -13158247 + (GA)n Simple_repeat Simple_repeat 1 89 0 9 1671 572 274 7 0 chr4 142471877 142472023 -13158097 + RSINE1 SINE B4 16 162 -3 9 1671 242 281 99 43 chr4 142473466 142473607 -13156513 + MT2A LTR ERVL 1 149 -384 9 1671 1299 244 90 47 chr4 142473482 142473826 -13156294 + MTE2a LTR MaLR 21 379 0 9 1671 474 291 115 35 chr4 142474287 142474547 -13155573 + RMER20B LTR ERVK 131 411 -216 9 1671 185 208 48 132 chr4 142474747 142474830 -13155290 + L4 LINE RTE 811 886 -1143 9 1671 956 271 9 9 chr4 142475010 142475233 -13154887 + ID_B1 SINE B4 2 224 0 9 1672 731 203 7 10 chr4 142475704 142476123 -13153997 + (TG)n Simple_repeat Simple_repeat 1 417 0 9 1672 252 345 0 0 chr4 142476245 142476332 -13153788 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1672 1149 245 53 11 chr4 142476343 142476607 -13153513 - B4A SINE B4 -16 276 2 9 1672 196 325 113 9 chr4 142478354 142478469 -13151651 - L2b LINE L2 -5 3370 3244 9 1672 254 293 233 0 chr4 142478504 142478620 -13151500 - B4A SINE B4 -12 280 138 9 1672 187 346 9 19 chr4 142478620 142478726 -13151394 - L2b LINE L2 -206 3169 3065 9 1672 252 280 0 0 chr4 142478794 142478844 -13151276 - MER87 LTR ERV1 -84 457 408 9 1672 540 234 189 107 chr4 142479062 142479268 -13150852 + MTE2b LTR MaLR 1 223 -156 9 1672 339 208 161 32 chr4 142479685 142479730 -13150390 - MTD LTR MaLR 0 379 327 9 1672 201 74 0 0 chr4 142479730 142479757 -13150363 + (CAA)n Simple_repeat Simple_repeat 2 28 0 9 1672 633 247 170 0 chr4 142479757 142479910 -13150210 - MTD LTR MaLR -43 376 196 9 1672 320 125 71 0 chr4 142479918 142479974 -13150146 + HAL1-3A_ME LINE L1 1953 2012 -846 9 1672 234 150 0 0 chr4 142479982 142480022 -13150098 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1672 377 196 6 34 chr4 142480119 142480136 -13149984 + (TA)n Simple_repeat Simple_repeat 2 17 0 9 1672 297 0 0 0 chr4 142480136 142480169 -13149951 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1672 377 196 6 34 chr4 142480169 142480330 -13149790 + (TA)n Simple_repeat Simple_repeat 1 157 0 9 1672 947 214 8 11 chr4 142480394 142480580 -13149540 - MTD LTR MaLR -234 185 13 9 1672 1646 202 91 9 chr4 142481436 142481776 -13148344 + MTEb LTR MaLR 12 379 0 9 1672 195 186 0 0 chr4 142481778 142481821 -13148299 + GA-rich Low_complexity Low_complexity 4 46 0 9 1672 899 181 44 0 chr4 142482560 142482720 -13147400 - Lx5 LINE L1 -274 6776 6610 9 1672 1265 142 128 16 chr4 142482715 142482965 -13147155 + Lx5 LINE L1 6773 7050 0 9 1672 233 354 0 48 chr4 142483257 142483340 -13146780 + ID4_ SINE ID 1 79 -4 9 1672 576 270 141 0 chr4 142483298 142483461 -13146659 + ID_B1 SINE B4 39 224 0 9 1672 2296 98 6 6 chr4 142483846 142484165 -13145955 + ORR1A2 LTR MaLR 1 319 -8 9 1672 485 260 20 0 chr4 142484233 142484333 -13145787 - B4 SINE B4 -190 102 1 9 1672 231 349 0 0 chr4 142485176 142485242 -13144878 + B1F2 SINE Alu 1 66 -83 9 1672 310 0 0 0 chr4 142485581 142485616 -13144504 - U2 snRNA snRNA -153 35 1 9 1672 210 196 43 0 chr4 142485683 142485729 -13144391 + CT-rich Low_complexity Low_complexity 3 50 0 9 1672 386 208 14 14 chr4 142485743 142485816 -13144304 + ID_B1 SINE B4 145 217 -7 9 1672 1567 202 27 17 chr4 142485884 142486175 -13143945 - MTD LTR MaLR -15 404 111 9 1672 387 180 0 0 chr4 142486175 142486236 -13143884 + B1_Mus2 SINE Alu 3 63 -84 9 1672 340 206 139 70 chr4 142486238 142486353 -13143767 - MTD LTR MaLR -278 143 21 9 1672 2192 143 6 20 chr4 142486658 142487015 -13143105 + ORR1B1 LTR MaLR 41 392 -2 9 1672 230 309 68 68 chr4 142487609 142487727 -13142393 + MLT1A1 LTR MaLR 21 138 -270 9 1672 471 317 182 5 chr4 142487743 142487930 -13142190 + ID_B1 SINE B4 3 222 -2 9 1672 477 0 0 0 chr4 142488666 142488719 -13141401 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1672 594 150 60 0 chr4 142488721 142488821 -13141299 - B1_Mur2 SINE Alu -13 136 31 9 1672 405 58 0 0 chr4 142488895 142488947 -13141173 + (TTTTA)n Simple_repeat Simple_repeat 4 55 0 9 1672 513 348 16 5 chr4 142489038 142489226 -13140894 + MamRep434 DNA TcMar 33 222 -204 9 1672 1438 235 18 60 chr4 142489492 142489872 -13140248 - MTE2a LTR MaLR 0 379 16 9 1672 620 302 25 36 chr4 142490096 142490356 -13139764 + ORR1E LTR MaLR 3 259 -115 9 1672 366 123 0 0 chr4 142491022 142491079 -13139041 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1672 459 0 0 0 chr4 142491079 142491130 -13138990 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1672 236 364 0 0 chr4 142491260 142491348 -13138772 + MIR SINE MIR 68 155 -107 9 1672 739 287 80 49 chr4 142491456 142491720 -13138400 - MTEa LTR MaLR -102 277 6 9 1672 206 365 37 0 chr4 142492048 142492155 -13137965 + MER5B DNA MER1_type 40 150 -28 9 1672 229 219 0 0 chr4 142492429 142492470 -13137650 + MIR SINE MIR 216 256 -6 9 1672 427 202 0 77 chr4 142492870 142492961 -13137159 + B4 SINE B4 2 85 -207 1 1672 284 258 0 43 chr4 142493134 142493203 -13136917 + B4A SINE B4 227 292 0 1 1672 240 111 0 0 chr4 142493301 142493337 -13136783 + (CCCCCT)n Simple_repeat Simple_repeat 3 38 0 1 1672 577 244 72 38 chr4 142493358 142493567 -13136553 - B3 SINE B2 0 216 1 1 1672 233 223 182 61 chr4 142494212 142494360 -13135760 + ORR1E LTR MaLR 45 210 -149 1 1672 330 98 0 0 chr4 142495036 142495087 -13135033 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1672 645 215 123 0 chr4 142495129 142495259 -13134861 + RSINE1 SINE B4 3 148 -17 1 1672 41 0 0 0 chr4 142495268 142495309 -13134811 + AT_rich Low_complexity Low_complexity 1 41 0 1 1672 235 0 57 0 chr4 142495707 142495742 -13134378 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1672 786 261 118 16 chr4 142495755 142496136 -13133984 + L1MB3 LINE L1 5759 6178 -5 1 1672 180 273 0 0 chr4 142496330 142496440 -13133680 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1672 557 210 0 8 chr4 142496460 142496712 -13133408 + (TG)n Simple_repeat Simple_repeat 1 249 0 1 1672 669 194 0 0 chr4 142496734 142496914 -13133206 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1672 426 251 0 0 chr4 142496970 142497133 -13132987 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1672 712 271 68 64 chr4 142497221 142497485 -13132635 - B4A SINE B4 -27 265 1 1 1672 474 254 256 17 chr4 142497485 142497661 -13132459 - B4 SINE B4 -66 226 8 1 1672 265 224 17 0 chr4 142497817 142497875 -13132245 + L1M5 LINE L1 5774 5832 -612 1 1672 706 224 22 30 chr4 142497875 142498053 -13132067 + B3A SINE B2 1 162 -31 1 1672 303 235 69 39 chr4 142498319 142498421 -13131699 - MER58B DNA MER1_type -105 236 132 1 1672 569 303 26 11 chr4 142498544 142498746 -13131374 + B4A SINE B4 1 216 -76 1 1672 271 314 155 52 chr4 142499713 142499945 -13130175 + MER34A1 LTR ERV1 153 408 -179 1 1672 180 0 0 0 chr4 142499980 142500000 -13130120 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1672 210 120 0 74 chr4 142500000 142500054 -13130066 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1 1672 249 177 177 0 chr4 142500055 142500117 -13130003 - B1F SINE Alu 0 149 77 2 1672 235 328 79 63 chr4 142500117 142500182 -13129938 - ID_B1 SINE B4 -1 223 95 3 1672 322 329 13 0 chr4 142500192 142500268 -13129852 - RSINE1 SINE B4 -8 157 81 4 1672 1315 235 81 40 chr4 142500294 142500689 -13129431 - BGLII_B LTR ERVK -26 415 5 5 1672 265 254 113 0 chr4 142500693 142500764 -13129356 - RSINE1 SINE B4 -85 80 2 4 1672 655 282 71 35 chr4 142500944 142501198 -13128922 + MLT1A0 LTR MaLR 32 294 -71 6 1672 1051 233 38 28 chr4 142501201 142501488 -13128632 + B4 SINE B4 3 292 0 7 1672 180 309 108 24 chr4 142501613 142501696 -13128424 - MIRm SINE MIR -86 190 101 8 1672 182 370 14 0 chr4 142501700 142501773 -13128347 - L2a LINE L2 0 3426 3353 9 1672 278 325 25 74 chr4 142502032 142502195 -13127925 - MLT1C LTR MaLR -5 462 308 1 1672 839 254 12 122 chr4 142502382 142502476 -13127644 - B4 SINE B4 0 292 218 1 1672 330 87 0 0 chr4 142502476 142502522 -13127598 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 1 1672 839 254 12 122 chr4 142502522 142502755 -13127365 - B4 SINE B4 -75 217 1 1 1672 264 324 41 36 chr4 142502764 142502904 -13127216 - MLT1C LTR MaLR -252 138 1 1 1672 204 125 0 0 chr4 142503356 142503388 -13126732 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 1672 295 254 0 17 chr4 142503789 142503882 -13126238 - B1F1 SINE Alu -10 110 24 1 1672 21 0 0 0 chr4 142503956 142503977 -13126143 + GC_rich Low_complexity Low_complexity 1 21 0 1 1672 320 298 39 0 chr4 142504514 142504618 -13125502 - MTD LTR MaLR -293 126 19 1 1672 182 333 0 0 chr4 142504902 142504959 -13125161 + MIR SINE MIR 60 116 -92 1 1672 1489 68 5 0 chr4 142506229 142506420 -13123700 - B2_Mm1t SINE B2 0 193 2 1 1672 364 262 47 39 chr4 142506716 142506843 -13123277 + MLT1K LTR MaLR 72 199 -396 1 1672 893 166 53 12 chr4 142506963 142507134 -13122986 + ORR1D1-int LTR MaLR 1192 1369 -1 2 1672 1735 166 79 77 chr4 142507142 142507508 -13122612 + ORR1D1 LTR MaLR 8 374 0 2 1672 232 336 109 7 chr4 142507527 142507665 -13122455 + LTR82B Low_complexity ERVL 576 727 -103 2 1672 389 140 73 6 chr4 142509029 142509194 -13120926 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1672 357 107 79 20 chr4 142509229 142509381 -13120739 + (CA)n Simple_repeat Simple_repeat 1 161 0 2 1672 193 121 95 16 chr4 142509396 142509522 -13120598 + (CA)n Simple_repeat Simple_repeat 2 137 0 2 1672 313 93 0 0 chr4 142509560 142509603 -13120517 + HAL1-3A_ME LINE L1 1976 2018 -840 2 1672 310 269 44 51 chr4 142510157 142510294 -13119826 + Lx8 LINE L1 7336 7471 -2 2 1672 1712 197 47 50 chr4 142510385 142510765 -13119355 + MTE2a LTR MaLR 1 379 0 2 1672 455 292 0 0 chr4 142510958 142511064 -13119056 + PB1D10 SINE Alu 3 108 -9 2 1672 879 218 5 34 chr4 142511112 142511316 -13118804 + B3A SINE B2 1 198 0 2 1672 403 168 0 44 chr4 142511323 142511504 -13118616 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 2 1672 218 246 0 0 chr4 142511505 142511574 -13118546 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 2 1672 219 36 0 0 chr4 142511581 142511609 -13118511 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1672 561 225 99 47 chr4 142511618 142511809 -13118311 + B3 SINE B2 4 204 -12 3 1672 180 158 0 0 chr4 142512458 142512496 -13117624 + (CCCTG)n Simple_repeat Simple_repeat 3 40 0 3 1672 950 227 50 50 chr4 142512747 142513030 -13117090 - B4 SINE B4 -8 284 2 3 1672 2356 147 64 3 chr4 142513182 142513571 -13116549 + MTC LTR MaLR 1 413 -8 3 1672 226 219 167 24 chr4 142513639 142513723 -13116397 - MTEb LTR MaLR -24 355 260 3 1672 291 176 0 81 chr4 142513950 142514024 -13116096 + MTD LTR MaLR 57 124 -295 3 1672 950 281 177 42 chr4 142514075 142514549 -13115571 + Lx9 LINE L1 6959 7511 -133 3 1672 240 35 0 0 chr4 142514549 142514578 -13115542 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1672 950 281 177 42 chr4 142514578 142514672 -13115448 + Lx9 LINE L1 7512 7610 -34 3 1672 369 0 0 0 chr4 142514672 142514713 -13115407 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1672 950 281 177 42 chr4 142514713 142514741 -13115379 + Lx9 LINE L1 7611 7636 -8 3 1672 545 205 8 0 chr4 142514759 142514886 -13115234 + GA-rich Low_complexity Low_complexity 1 128 0 4 1672 251 350 19 119 chr4 142515040 142515400 -13114720 + L2a LINE L2 3063 3425 -1 4 1672 275 250 0 0 chr4 142515433 142515493 -13114627 + MamRep434 DNA TcMar 367 426 0 4 1672 274 291 184 11 chr4 142515560 142515734 -13114386 + Lx8 LINE L1 7264 7467 -6 4 1672 311 261 0 0 chr4 142516283 142516352 -13113768 - ID4 SINE ID -14 69 1 4 1672 750 294 73 33 chr4 142516811 142517085 -13113035 + B4A SINE B4 4 288 -4 4 1672 585 76 0 0 chr4 142517092 142517171 -13112949 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1672 479 292 148 23 chr4 142517505 142517578 -13112542 - MT2A LTR ERVL -289 244 1 4 1672 653 193 97 28 chr4 142517578 142517722 -13112398 - MTEb LTR MaLR -225 154 1 3 1672 542 292 46 112 chr4 142517807 142518206 -13111914 + RLTR12B LTR ERVK 55 497 -31 4 1672 201 334 39 99 chr4 142518511 142518642 -13111478 + L2b LINE L2 3201 3343 -44 4 1672 266 221 0 29 chr4 142518687 142518757 -13111363 + C-rich Low_complexity Low_complexity 1 68 0 5 1672 266 272 26 120 chr4 142518809 142518926 -13111194 + ORSL DNA Tip100 1 106 -169 5 1672 1551 212 64 22 chr4 142519046 142519407 -13110713 + MTEa LTR MaLR 1 376 -3 5 1672 325 300 154 6 chr4 142519575 142519757 -13110363 - MLT1E3 LTR MaLR -34 620 405 5 1672 283 299 13 0 chr4 142519903 142519980 -13110140 - MLT1E3 LTR MaLR -412 148 71 5 1672 226 318 30 0 chr4 142520222 142520288 -13109832 + L4 LINE RTE 1754 1821 -208 5 1672 1656 193 73 0 chr4 142521157 142521473 -13108647 + MTC LTR MaLR 6 344 -77 5 1672 4851 140 82 20 chr4 142521481 142522319 -13107801 - RMER19B LTR ERVK -12 890 1 5 1672 477 148 34 0 chr4 142522319 142522407 -13107713 + MTC LTR MaLR 329 419 0 5 1672 1110 190 54 0 chr4 142522648 142522853 -13107267 + B3 SINE B2 1 216 0 5 1672 414 0 0 0 chr4 142522856 142522902 -13107218 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1672 248 277 0 44 chr4 142522911 142522979 -13107141 + ID2 SINE ID 16 80 -3 5 1672 225 294 0 42 chr4 142522918 142522989 -13107131 + ID_B1 SINE B4 24 91 -133 6 1672 942 196 194 13 chr4 142522991 142523223 -13106897 + B4 SINE B4 4 277 -15 6 1672 320 291 12 0 chr4 142523232 142523318 -13106802 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1672 909 271 38 125 chr4 142524612 142524996 -13105124 - MTE2a LTR MaLR -35 344 6 6 1672 241 324 0 63 chr4 142525288 142525367 -13104753 - MIR SINE MIR -170 92 19 6 1672 298 257 89 0 chr4 142525622 142525723 -13104397 + HAL1 LINE L1 1792 1901 -606 6 1672 240 188 10 167 chr4 142525900 142526002 -13104118 + HAL1 LINE L1 2065 2150 -357 6 1672 5022 153 24 33 chr4 142526308 142527260 -13102860 + L1Md_T LINE L1 262 1205 -5411 6 1672 37177 30 0 0 chr4 142527266 142531683 -13098437 + L1Md_T LINE L1 1170 5586 -297 6 1672 8260 51 0 0 chr4 142531683 142532679 -13097441 + L1Md_T LINE L1 5587 6582 0 6 1672 374 69 17 0 chr4 142532741 142532799 -13097321 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1672 627 264 17 32 chr4 142532808 142532949 -13097171 - RSINE1 SINE B4 -24 141 2 6 1672 4960 59 19 14 chr4 142532960 142533596 -13096524 + L1Md_F2 LINE L1 5944 6582 0 6 1672 229 242 11 11 chr4 142534026 142534118 -13096002 + CT-rich Low_complexity Low_complexity 2 93 0 7 1672 923 252 55 39 chr4 142535378 142535661 -13094459 - MTEb LTR MaLR -108 271 1 7 1672 444 283 58 0 chr4 142535741 142535879 -13094241 + L2a LINE L2 3281 3426 0 7 1672 484 130 22 0 chr4 142535921 142536013 -13094107 + (TGGA)n Simple_repeat Simple_repeat 4 97 0 7 1672 318 273 11 11 chr4 142536043 142536217 -13093903 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 7 1672 413 364 12 12 chr4 142536231 142536559 -13093561 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 7 1672 399 329 166 59 chr4 142538017 142538139 -13091981 + LTR86B1 LTR ERVL 2 148 -345 7 1672 333 0 0 0 chr4 142538139 142538176 -13091944 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1672 399 329 166 59 chr4 142538176 142538457 -13091663 + LTR86B1 LTR ERVL 149 448 -45 7 1672 625 55 11 11 chr4 142538974 142539065 -13091055 + (TG)n Simple_repeat Simple_repeat 1 91 0 7 1672 296 301 12 24 chr4 142539102 142539187 -13090933 - B4A SINE B4 -9 283 200 7 1672 1082 229 29 165 chr4 142539199 142539617 -13090503 - MTE2a LTR MaLR -18 361 1 7 1672 919 267 9 0 chr4 142539617 142539824 -13090296 - B4A SINE B4 -83 209 1 7 1672 196 191 219 16 chr4 142541348 142541412 -13088708 - L2a LINE L2 -1 3425 3349 7 1672 831 275 62 9 chr4 142541702 142541926 -13088194 + B4 SINE B4 2 237 -55 8 1672 5115 67 8 67 chr4 142541951 142542698 -13087422 - L1_Mus3 LINE L1 0 6638 5936 8 1672 420 20 0 0 chr4 142542740 142542789 -13087331 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1672 398 287 73 52 chr4 142543154 142543345 -13086775 + MIRm SINE MIR 14 208 -68 8 1672 310 350 29 0 chr4 142543398 142543501 -13086619 + L1MEg LINE L1 1842 1947 -4137 8 1672 24 0 0 0 chr4 142544253 142544277 -13085843 + AT_rich Low_complexity Low_complexity 1 24 0 8 1672 346 224 0 0 chr4 142544377 142544444 -13085676 - RSINE1 SINE B4 -91 74 8 8 1672 539 304 126 35 chr4 142545012 142545186 -13084934 - B4 SINE B4 -6 286 97 8 1672 575 250 43 7 chr4 142545188 142545329 -13084791 + B3A SINE B2 35 180 -18 8 1672 300 70 0 0 chr4 142545335 142545378 -13084742 + (CATA)n Simple_repeat Simple_repeat 2 44 0 8 1672 461 264 0 18 chr4 142545387 142545499 -13084621 - B4 SINE B4 -181 111 2 8 1672 1311 191 149 48 chr4 142545832 142546168 -13083952 - MTE2b LTR MaLR -9 370 1 9 1672 384 97 0 0 chr4 142547338 142547400 -13082720 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 9 1672 1016 241 5 28 chr4 142547483 142547701 -13082419 + B4A SINE B4 6 218 -74 9 1672 354 317 16 65 chr4 142547712 142547968 -13082152 + B4 SINE B4 1 234 -58 9 1672 285 270 0 16 chr4 142548076 142548140 -13081980 + B4A SINE B4 219 281 -11 9 1672 372 77 0 0 chr4 142548142 142548194 -13081926 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1672 432 322 27 0 chr4 142548294 142548440 -13081680 - MER3 DNA MER1_type -5 204 55 9 1672 322 94 0 70 chr4 142548458 142548515 -13081605 + B3 SINE B2 1 53 -163 9 1672 210 37 0 0 chr4 142548673 142548700 -13081420 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1672 204 354 38 0 chr4 142549617 142549696 -13080424 + MIR SINE MIR 24 105 -157 9 1672 512 183 11 0 chr4 142549948 142550041 -13080079 - MTD LTR MaLR -57 362 269 9 1672 227 282 41 27 chr4 142550101 142550174 -13079946 - MTD LTR MaLR -149 270 197 9 1672 1401 201 128 25 chr4 142550177 142550327 -13079793 + ORR1D2 LTR MaLR 5 165 -205 1 1672 492 18 0 0 chr4 142550327 142550384 -13079736 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1672 1401 201 128 25 chr4 142550384 142550560 -13079560 + ORR1D2 LTR MaLR 166 364 -6 1 1672 686 266 74 5 chr4 142550565 142550754 -13079366 - MTD LTR MaLR -217 202 1 9 1672 297 89 0 0 chr4 142550983 142551028 -13079092 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1672 26 0 0 0 chr4 142551323 142551349 -13078771 + GC_rich Low_complexity Low_complexity 1 26 0 1 1672 846 278 114 15 chr4 142552012 142552337 -13077783 - ORR1E LTR MaLR -2 357 1 1 1672 573 177 0 0 chr4 142552661 142552774 -13077346 + C-rich Low_complexity Low_complexity 2 114 0 1 1672 208 374 0 16 chr4 142552779 142552904 -13077216 + CT-rich Low_complexity Low_complexity 5 127 0 1 1672 2467 63 3 6 chr4 142553969 142554289 -13075831 + ORR1A2 LTR MaLR 1 319 -8 1 1672 1057 186 63 28 chr4 142554560 142554847 -13075273 + RMER10A LTR ERVL 76 372 -70 1 1672 890 222 27 5 chr4 142554830 142555016 -13075104 - MTE2b LTR MaLR -189 190 1 1 1672 1249 254 56 11 chr4 142555338 142555624 -13074496 + ORR1D2 LTR MaLR 39 337 -33 1 1672 681 278 98 78 chr4 142555749 142556096 -13074024 - ORR1E LTR MaLR -5 354 1 1 1672 535 335 147 68 chr4 142556272 142556790 -13073330 + MLT1K LTR MaLR 1 559 -36 1 1672 2476 158 5 15 chr4 142556818 142557229 -13072891 + MTB_Mm LTR MaLR 1 407 0 1 1672 758 198 28 114 chr4 142557562 142557773 -13072347 + B3A SINE B2 6 198 0 1 1672 806 219 12 23 chr4 142558381 142558554 -13071566 + B3A SINE B2 12 182 -16 1 1672 584 50 12 0 chr4 142558567 142558647 -13071473 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 1 1672 420 20 0 0 chr4 142558816 142558865 -13071255 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1672 203 133 0 22 chr4 142559161 142559207 -13070913 + T-rich Low_complexity Low_complexity 1 45 0 1 1672 812 284 56 98 chr4 142559332 142559535 -13070585 + B4 SINE B4 10 218 -74 1 1672 809 214 75 15 chr4 142559535 142559734 -13070386 + B3 SINE B2 1 211 -5 1 1672 812 284 56 98 chr4 142559734 142559815 -13070305 + B4 SINE B4 219 282 -10 1 1672 199 190 11 18 chr4 142559921 142559983 -13070137 + MIR SINE MIR 101 170 -98 1 1672 418 259 0 109 chr4 142560762 142560909 -13069211 + B4 SINE B4 36 166 -126 1 1672 199 347 64 39 chr4 142560969 142561125 -13068995 + MIRb SINE MIR 14 173 -95 1 1672 303 345 84 63 chr4 142561261 142561608 -13068512 - ORR1D2 LTR MaLR 0 370 17 1 1672 661 251 5 67 chr4 142562284 142562493 -13067627 + B3A SINE B2 3 198 0 1 1672 1180 225 29 4 chr4 142562742 142563023 -13067097 - B4A SINE B4 0 292 5 1 1672 330 200 0 30 chr4 142563304 142563371 -13066749 + BC1_Mm scRNA scRNA 7 71 -81 1 1672 1108 187 35 5 chr4 142563311 142563510 -13066610 + ID_B1 SINE B4 14 218 -6 1 1672 612 311 85 49 chr4 142563567 142563814 -13066306 - MER2 DNA MER2_type 0 345 90 1 1672 554 267 37 21 chr4 142564547 142564738 -13065382 + L1MA4 LINE L1 5738 5931 -369 1 1672 333 0 0 0 chr4 142565200 142565237 -13064883 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1672 234 128 0 0 chr4 142565285 142565324 -13064796 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1672 421 282 48 55 chr4 142565329 142565494 -13064626 - B4A SINE B4 0 292 129 1 1672 265 104 0 127 chr4 142566120 142566175 -13063945 + RLTR20B3 LTR ERVK 18 65 -512 1 1672 897 10 0 0 chr4 142566190 142566292 -13063828 + (GGGAA)n Simple_repeat Simple_repeat 5 106 0 1 1672 602 179 24 57 chr4 142566627 142566751 -13063369 + RLTR20B3 LTR ERVK 1 120 -457 1 1672 498 286 77 35 chr4 142566752 142567038 -13063082 + L1MB2 LINE L1 5757 6054 -117 1 1672 2824 44 16 97 chr4 142567353 142567777 -13062343 + RLTR10 LTR ERVK 1 390 0 1 1672 15005 23 3 5 chr4 142567777 142569465 -13060655 + RLTR10-int LTR ERVK 302 1986 -1 1 1672 2751 42 16 132 chr4 142569465 142569906 -13060214 + RLTR10 LTR ERVK 1 390 0 1 1672 405 272 8 26 chr4 142569915 142570032 -13060088 + PB1D10 SINE Alu 3 117 0 1 1672 255 200 81 32 chr4 142570045 142570107 -13060013 + ID4 SINE ID 18 82 -1 1 1672 2152 149 48 8 chr4 142570145 142570523 -13059597 + ORR1B1 LTR MaLR 1 393 -1 1 1672 215 303 143 57 chr4 142570627 142570642 -13059478 + B3 SINE B2 26 83 -133 1 1672 538 226 8 46 chr4 142570642 142570772 -13059348 + RSINE1 SINE B4 41 165 0 1 1672 215 303 143 57 chr4 142570772 142570802 -13059318 + B3 SINE B2 84 215 -1 1 1672 2054 246 47 18 chr4 142570940 142571429 -13058691 + RLTR18B LTR ERVK 1 503 -9 1 1672 255 31 0 0 chr4 142571430 142571462 -13058658 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1672 248 256 30 53 chr4 142571633 142571731 -13058389 + MLT1A1 LTR MaLR 281 387 -21 1 1672 614 242 49 56 chr4 142572378 142572540 -13057580 + RSINE1 SINE B4 1 161 -4 1 1672 274 268 0 68 chr4 142572985 142573073 -13057047 - ID4 SINE ID -1 82 1 1 1672 365 340 88 29 chr4 142573441 142573714 -13056406 - L1M5 LINE L1 -768 5378 5090 1 1672 200 34 0 33 chr4 142574430 142574460 -13055660 + (ATG)n Simple_repeat Simple_repeat 1 29 0 1 1672 611 197 47 8 chr4 142574462 142574590 -13055530 - B1_Mur1 SINE Alu -15 134 2 1 1672 583 341 104 40 chr4 142574665 142575147 -13054973 - L1M5 LINE L1 -1736 4407 3912 1 1672 231 220 33 17 chr4 142575461 142575521 -13054599 + MTE2b LTR MaLR 319 379 0 1 1672 855 307 25 25 chr4 142575682 142575966 -13054154 + B4A SINE B4 9 292 0 1 1672 189 0 0 0 chr4 142576008 142576029 -13054091 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1672 951 288 26 106 chr4 142576148 142576214 -13053906 + B4 SINE B4 1 56 -236 1 1672 953 76 0 0 chr4 142576214 142576346 -13053774 - L1_Mus1 LINE L1 0 6567 6436 1 1672 951 288 26 106 chr4 142576346 142576590 -13053530 + B4 SINE B4 57 286 -6 1 1672 502 313 32 32 chr4 142576831 142577016 -13053104 + B3A SINE B2 2 186 -12 1 1672 869 137 18 6 chr4 142577197 142577366 -13052754 + GA-rich Low_complexity Low_complexity 2 172 0 1 1672 4395 246 55 84 chr4 142577739 142579067 -13051053 - Lx5 LINE L1 0 7050 5761 1 1672 282 73 0 0 chr4 142579116 142579157 -13050963 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1672 1527 212 56 35 chr4 142579173 142579604 -13050516 + RLTR20A2 LTR ERVK 55 494 -84 1 1672 345 133 0 0 chr4 142579606 142579681 -13050439 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1672 480 200 41 31 chr4 142579691 142579789 -13050331 + RLTR20A2 LTR ERVK 480 578 0 1 1672 8173 172 34 6 chr4 142579789 142581270 -13048850 - Lx5 LINE L1 -162 5715 4194 1 1672 417 328 155 0 chr4 142581401 142581575 -13048545 - MLT1I LTR MaLR -139 272 72 1 1672 189 0 0 0 chr4 142582129 142582150 -13047970 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1672 1242 100 0 0 chr4 142582355 142582565 -13047555 + (TAGA)n Simple_repeat Simple_repeat 1 210 0 1 1672 649 325 50 7 chr4 142582735 142583014 -13047106 - B4A SINE B4 0 292 2 1 1672 206 209 0 29 chr4 142583207 142583276 -13046844 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 1 1672 537 192 0 0 chr4 142583360 142583485 -13046635 + (TGGA)n Simple_repeat Simple_repeat 2 126 0 1 1672 206 235 0 12 chr4 142583572 142583654 -13046466 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 1 1672 819 271 130 14 chr4 142584106 142584398 -13045722 + MER63D DNA AcHobo 1 326 -735 1 1672 665 257 21 0 chr4 142584426 142584566 -13045554 + ID_B1 SINE B4 82 224 0 1 1672 337 328 57 16 chr4 142584573 142584697 -13045423 + B1F SINE Alu 4 132 -17 1 1672 304 371 0 0 chr4 142584786 142584902 -13045218 + (TGGG)n Simple_repeat Simple_repeat 1 116 0 1 1672 639 261 9 16 chr4 142584902 142585223 -13044897 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 1 1672 1104 228 71 60 chr4 142586926 142587294 -13042826 + RMER13A LTR ERVK 19 390 -470 1 1672 244 246 48 32 chr4 142587273 142587336 -13042784 + RMER13A LTR ERVK 633 696 -212 1 1672 1827 178 18 58 chr4 142587673 142588067 -13042053 - ORR1C1 LTR MaLR 0 378 1 1 1672 1048 126 73 10 chr4 142588067 142588259 -13041861 - ORR1C1-int LTR MaLR 0 1509 1306 1 1672 684 147 0 0 chr4 142588250 142588359 -13041761 - ORR1C1 LTR MaLR -269 109 1 1 1672 23 33 0 0 chr4 142588431 142588461 -13041659 + AT_rich Low_complexity Low_complexity 1 30 0 1 1672 394 248 21 63 chr4 142588722 142588864 -13041256 + L1MB8 LINE L1 5528 5663 -521 1 1672 603 260 86 60 chr4 142588864 142589226 -13040894 + RLTR16 LTR ERVK 32 450 -78 1 1672 723 225 132 91 chr4 142589390 142589708 -13040412 + L1MB8 LINE L1 5675 6005 -173 1 1672 280 281 0 33 chr4 142589739 142589831 -13040289 + L1MB8 LINE L1 6089 6177 -1 1 1672 791 270 138 24 chr4 142589841 142589944 -13040176 + B4A SINE B4 2 133 -159 1 1672 231 36 0 0 chr4 142589944 142589972 -13040148 + (CAGAGA)n Simple_repeat Simple_repeat 5 32 0 1 1672 791 270 138 24 chr4 142589972 142590106 -13040014 + B4A SINE B4 134 269 -23 1 1672 315 122 0 0 chr4 142590106 142590155 -13039965 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1672 791 270 138 24 chr4 142590155 142590170 -13039950 + B4A SINE B4 270 284 -8 1 1672 34 0 0 0 chr4 142590326 142590360 -13039760 + AT_rich Low_complexity Low_complexity 1 34 0 1 1672 235 326 31 109 chr4 142590672 142590865 -13039255 + MTEa LTR MaLR 202 379 0 1 1672 397 314 141 25 chr4 142591302 142591501 -13038619 - B4A SINE B4 -56 236 15 1 1672 323 196 0 0 chr4 142591530 142591586 -13038534 - PB1D9 SINE Alu -6 114 59 1 1672 472 221 25 58 chr4 142592242 142592362 -13037758 + MLT1G1 LTR MaLR 81 196 -383 1 1672 240 289 132 19 chr4 142592345 142592451 -13037669 - B4 SINE B4 -174 118 1 1 1672 340 337 107 19 chr4 142592494 142592700 -13037420 - L1MEg LINE L1 -5295 789 566 1 1672 552 305 47 29 chr4 142592755 142592927 -13037193 + B4 SINE B4 86 260 -32 1 1672 834 173 45 62 chr4 142592927 142593106 -13037014 + B2_Mm2 SINE B2 11 186 -9 1 1672 525 282 26 0 chr4 142593110 142593227 -13036893 - B3A SINE B2 -22 176 57 1 1672 237 83 0 0 chr4 142594589 142594625 -13035495 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1 1672 197 354 0 0 chr4 142594767 142594832 -13035288 - L2b LINE L2 0 3375 3311 1 1672 468 0 0 0 chr4 142595208 142595260 -13034860 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1672 379 213 26 13 chr4 142595266 142595342 -13034778 + B4A SINE B4 5 81 -211 1 1672 456 19 0 0 chr4 142595343 142595396 -13034724 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1672 475 202 29 88 chr4 142595396 142595511 -13034609 + B4A SINE B4 121 228 -64 1 1672 679 190 89 27 chr4 142595511 142595657 -13034463 + RSINE1 SINE B4 3 157 -8 1 1672 475 202 29 88 chr4 142595657 142595677 -13034443 + B4A SINE B4 229 248 -44 1 1672 227 79 26 0 chr4 142595678 142595716 -13034404 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1 1672 289 253 12 37 chr4 142595792 142595874 -13034246 + L2b LINE L2 3277 3356 -19 1 1672 272 277 0 35 chr4 142595882 142595968 -13034152 + L1MA7 LINE L1 5534 5616 -675 2 1672 440 285 6 77 chr4 142595973 142596129 -13033991 + ID_B1 SINE B4 7 151 -73 2 1672 403 274 120 27 chr4 142596131 142596315 -13033805 + Lx8 LINE L1 7269 7469 -4 2 1672 244 259 0 0 chr4 142596324 142596378 -13033742 + ID_B1 SINE B4 146 199 -25 2 1672 1175 298 72 59 chr4 142596384 142597012 -13033108 + L1MA7 LINE L1 5607 6242 -49 2 1672 1235 157 18 48 chr4 142597143 142597371 -13032749 + URR1A DNA MER1_type 6 226 0 2 1672 545 136 0 0 chr4 142597440 142597528 -13032592 - URR1B DNA MER1_type -62 163 76 2 1672 620 254 19 104 chr4 142597671 142597882 -13032238 + B3A SINE B2 1 193 -5 2 1672 207 0 0 0 chr4 142597904 142597927 -13032193 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1672 765 296 119 55 chr4 142597949 142598161 -13031959 + MER68 LTR ERVL 63 279 -284 2 1672 969 255 120 44 chr4 142598161 142598502 -13031618 - ORR1D2 LTR MaLR -3 367 1 2 1672 765 296 119 55 chr4 142598502 142598650 -13031470 + MER68 LTR ERVL 280 446 -117 2 1672 323 250 0 101 chr4 142598831 142598849 -13031271 + ID4_ SINE ID 1 15 -68 2 1672 913 265 43 84 chr4 142598849 142599220 -13030900 - ORR1E LTR MaLR -3 356 1 2 1672 323 250 0 101 chr4 142599220 142599290 -13030830 + ID4_ SINE ID 16 80 -3 2 1672 207 152 0 0 chr4 142599290 142599336 -13030784 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1672 266 313 0 0 chr4 142599357 142599424 -13030696 - MIR SINE MIR -82 126 60 2 1672 1063 254 14 40 chr4 142599564 142599839 -13030281 + RLTR18 LTR ERVK 1 268 -348 2 1672 372 306 45 0 chr4 142599874 142599985 -13030135 + MTE-int LTR MaLR 1048 1163 -417 2 1672 584 200 8 0 chr4 142600123 142600253 -13029867 + GA-rich Low_complexity Low_complexity 2 132 0 2 1672 1549 247 19 19 chr4 142600306 142600665 -13029455 + RLTR18B LTR ERVK 125 483 -29 2 1672 568 228 9 9 chr4 142600875 142600990 -13029130 - PB1 SINE Alu -12 115 1 2 1672 942 228 15 34 chr4 142601452 142601656 -13028464 - ID_B1 SINE B4 -22 202 3 2 1672 898 271 19 5 chr4 142602246 142602457 -13027663 + B4A SINE B4 3 216 -76 2 1672 213 178 0 0 chr4 142602458 142602503 -13027617 + (CAAT)n Simple_repeat Simple_repeat 4 48 0 2 1672 234 339 110 0 chr4 142603258 142603367 -13026753 + MIRc SINE MIR 84 204 -64 2 1672 377 284 51 34 chr4 142603937 142604112 -13026008 - L2 LINE L2 -733 2686 2509 2 1672 677 258 79 32 chr4 142604340 142604556 -13025564 - MLT1C LTR MaLR -75 392 167 2 1672 583 298 76 95 chr4 142604646 142605013 -13025107 + RLTR26 LTR ERVK 97 456 -186 2 1672 477 265 111 32 chr4 142605320 142605573 -13024547 - B4 SINE B4 -18 274 2 2 1672 1333 157 9 5 chr4 142605695 142605919 -13024201 + URR1A DNA MER1_type 2 226 0 2 3 6828 55 5 12 chr4 142605975 142606840 -13023280 + L1_Mus2 LINE L1 5728 6566 0 2 1673 183 321 136 9 chr4 142606870 142606980 -13023140 - L2 LINE L2 -878 2541 2418 2 1673 658 287 5 138 chr4 142606986 142607204 -13022916 + B4A SINE B4 2 190 -102 2 1673 753 142 12 24 chr4 142607278 142607525 -13022595 + GA-rich Low_complexity Low_complexity 1 243 0 2 1673 244 241 15 141 chr4 142607545 142607680 -13022440 - L2 LINE L2 -1058 2361 2244 2 1673 513 0 0 0 chr4 142608139 142608196 -13021924 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1673 1335 6 34 17 chr4 142608882 142609059 -13021061 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1673 193 211 36 55 chr4 142609476 142609531 -13020589 - MIR SINE MIR -56 152 99 2 1673 284 330 93 51 chr4 142609904 142610140 -13019980 + RMER15 LTR ERVL 319 564 -11 2 1673 458 302 0 17 chr4 142610256 142610374 -13019746 + PB1 SINE Alu 1 116 -11 2 1673 684 291 62 23 chr4 142610431 142610737 -13019383 - MER33 DNA MER1_type 0 324 7 2 1673 367 308 81 12 chr4 142612058 142612219 -13017901 - Tigger5 DNA MER2_type -3 2403 2232 2 1673 701 225 8 0 chr4 142612348 142612477 -13017643 - B3 SINE B2 -86 130 1 2 1673 424 250 56 0 chr4 142612477 142612637 -13017483 - L1M2 LINE L1 -2963 3180 3012 2 1673 510 208 185 39 chr4 142612686 142612816 -13017304 - RSINE1 SINE B4 -14 151 3 2 1673 466 344 111 9 chr4 142612825 142613051 -13017069 - L1M2 LINE L1 -3110 3033 2785 2 1673 207 69 0 0 chr4 142613107 142613136 -13016984 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2 1673 391 311 139 12 chr4 142613176 142613599 -13016521 - L1M2 LINE L1 -3432 2711 2235 2 1673 333 303 115 5 chr4 142613929 142614264 -13015856 - L1MEg LINE L1 -3976 1871 1453 2 1673 481 325 113 19 chr4 142614624 142614837 -13015283 - MIR SINE MIR -5 257 25 2 1673 736 40 10 10 chr4 142615484 142615585 -13014535 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 1673 593 261 15 23 chr4 142615594 142615727 -13014393 - RSINE1 SINE B4 -30 135 4 2 1673 420 200 178 10 chr4 142615755 142615856 -13014264 - PB1D9 SINE Alu -1 119 2 2 1673 1057 159 86 5 chr4 142615915 142616124 -13013996 - URR1A DNA MER1_type 0 226 1 2 1673 343 326 109 36 chr4 142616141 142616278 -13013842 + RSINE1 SINE B4 3 149 -16 2 1673 438 53 0 0 chr4 142616278 142616335 -13013785 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1673 220 231 24 68 chr4 142616573 142616657 -13013463 + MIRm SINE MIR 103 184 -92 2 1673 243 256 131 29 chr4 142616719 142616960 -13013160 + L2c LINE L2 2837 3108 -279 2 1673 198 0 0 0 chr4 142617492 142617514 -13012606 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1673 227 232 195 0 chr4 142617534 142617616 -13012504 + MIRb SINE MIR 45 142 -126 2 1673 574 274 78 20 chr4 142617767 142618051 -13012069 + MTEa LTR MaLR 7 346 -33 2 1673 1062 179 73 24 chr4 142618132 142618338 -13011782 - B3 SINE B2 0 216 1 2 1673 189 208 39 59 chr4 142618589 142618640 -13011480 - L2 LINE L2 -359 3060 3011 2 1673 1128 80 0 0 chr4 142619177 142619315 -13010805 + B1_Mus2 SINE Alu 5 142 -5 2 1673 387 105 0 0 chr4 142619315 142619372 -13010748 + (GGA)n Simple_repeat Simple_repeat 3 59 0 2 1673 236 225 42 0 chr4 142619945 142619960 -13010160 + (TAGA)n Simple_repeat Simple_repeat 4 18 0 2 1673 1475 55 17 0 chr4 142619960 142620141 -13009979 + B2_Mm2 SINE B2 1 184 -11 2 1673 236 225 42 0 chr4 142620141 142620196 -13009924 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2 1673 1257 230 49 25 chr4 142620516 142620801 -13009319 - B4 SINE B4 0 292 1 2 1673 255 315 80 27 chr4 142620801 142620951 -13009169 - MER33 DNA MER1_type -40 284 127 2 1673 251 282 7 82 chr4 142620974 142621109 -13009011 + PB1 SINE Alu 1 125 -2 2 1673 847 166 88 99 chr4 142621237 142621418 -13008702 + B3A SINE B2 3 181 -14 2 1673 180 0 0 0 chr4 142621420 142621440 -13008680 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1673 1348 87 16 5 chr4 142621773 142621959 -13008161 - B2_Mm2 SINE B2 -5 190 3 2 1673 1050 239 110 4 chr4 142622154 142622418 -13007702 + B4 SINE B4 1 292 0 2 1673 405 273 36 46 chr4 142622440 142622636 -13007484 - RMER12 LTR ERVK -365 957 764 2 1673 298 273 68 0 chr4 142622674 142622762 -13007358 - RMER30 DNA MER1_type -99 103 10 2 1673 281 237 85 34 chr4 142622940 142623058 -13007062 - L3 LINE CR1 -110 4379 4256 2 1673 534 91 0 0 chr4 142623226 142623303 -13006817 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1673 27 0 0 0 chr4 142623390 142623417 -13006703 + AT_rich Low_complexity Low_complexity 1 27 0 2 1673 259 236 27 27 chr4 142623695 142623769 -13006351 + GA-rich Low_complexity Low_complexity 5 78 0 2 1673 297 0 0 0 chr4 142624269 142624302 -13005818 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1673 229 323 0 0 chr4 142624688 142624753 -13005367 - MIR SINE MIR -194 68 4 2 1673 225 0 0 0 chr4 142624904 142624929 -13005191 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1673 939 18 0 0 chr4 142624929 142625037 -13005083 + (GA)n Simple_repeat Simple_repeat 2 110 0 2 1673 931 227 88 35 chr4 142625240 142625500 -13004620 + B4 SINE B4 1 274 -18 2 1673 403 331 40 55 chr4 142625545 142625781 -13004339 + LTR33 LTR ERVL 86 297 -234 2 1673 646 349 47 53 chr4 142626324 142626684 -13003436 + MLT1B LTR MaLR 3 360 -30 2 1673 256 250 73 120 chr4 142626809 142626959 -13003161 + MLT1D LTR MaLR 261 403 -102 2 1673 23 0 0 0 chr4 142627107 142627130 -13002990 + AT_rich Low_complexity Low_complexity 1 23 0 2 1673 327 164 189 14 chr4 142627165 142627239 -13002881 + B4 SINE B4 3 89 -203 2 1673 692 209 36 0 chr4 142627242 142627381 -13002739 + B3A SINE B2 5 148 -50 2 1673 441 81 0 0 chr4 142627381 142627443 -13002677 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1673 323 271 105 61 chr4 142627443 142627484 -13002636 + B2_Mm1a SINE B2 154 193 0 2 1673 709 262 62 71 chr4 142627467 142627489 -13002631 + B4 SINE B4 67 86 -206 2 1673 1584 209 68 25 chr4 142627489 142627842 -13002278 - ORR1D2 LTR MaLR 0 370 3 2 1673 709 262 62 71 chr4 142627842 142628017 -13002103 + B4 SINE B4 87 268 -24 2 1673 201 74 0 0 chr4 142628017 142628044 -13002076 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1673 709 262 62 71 chr4 142628044 142628071 -13002049 + B4 SINE B4 269 290 -2 2 1673 461 297 0 0 chr4 142629079 142629190 -13000930 + PB1D10 SINE Alu 1 111 -6 2 1673 575 307 24 24 chr4 142629344 142629554 -13000566 - RMER15 LTR ERVL -15 560 351 2 1673 1353 223 123 3 chr4 142629885 142630258 -12999862 - MTD LTR MaLR -1 418 1 2 1673 1248 140 8 71 chr4 142630464 142630624 -12999496 + URR1B DNA MER1_type 2 155 -70 2 1673 1051 113 0 0 chr4 142630624 142630766 -12999354 + B1_Mus1 SINE Alu 2 143 -5 2 1673 477 0 0 0 chr4 142630768 142630821 -12999299 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2 1673 1248 140 8 71 chr4 142630821 142630896 -12999224 + URR1B DNA MER1_type 156 225 0 2 1673 326 280 117 26 chr4 142630896 142631050 -12999070 - L1MDa LINE L1 -4076 2557 2390 2 1673 387 320 30 106 chr4 142631196 142631395 -12998725 + B4A SINE B4 5 188 -104 2 1673 1258 28 14 0 chr4 142631435 142631579 -12998541 + B1_Mus2 SINE Alu 2 147 0 2 1673 231 85 33 33 chr4 142631586 142631647 -12998473 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 2 1673 661 228 80 51 chr4 142632034 142632210 -12997910 + B3A SINE B2 2 182 -16 2 1673 183 42 0 0 chr4 142633375 142633399 -12996721 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1673 531 45 0 0 chr4 142633400 142633466 -12996654 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1673 395 216 68 0 chr4 142633611 142633699 -12996421 + ORR1E LTR MaLR 261 354 -5 3 1673 304 296 134 38 chr4 142634216 142634363 -12995757 + MIR SINE MIR 16 184 -78 3 1673 339 25 0 0 chr4 142634363 142634403 -12995717 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1673 304 296 134 38 chr4 142634403 142634441 -12995679 + MIR SINE MIR 185 219 -43 3 1673 228 203 39 27 chr4 142634445 142634712 -12995408 + (TAGA)n Simple_repeat Simple_repeat 1 270 0 3 1673 736 170 22 19 chr4 142634731 142635003 -12995117 + (TAGA)n Simple_repeat Simple_repeat 1 273 0 3 1673 380 321 84 0 chr4 142635890 142636021 -12994099 + B1F1 SINE Alu 3 144 -5 3 1673 1021 246 114 15 chr4 142636156 142636420 -12993700 + B4A SINE B4 1 290 -2 3 1673 261 182 0 0 chr4 142636425 142636480 -12993640 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1673 193 278 139 0 chr4 142636491 142636563 -12993557 + MIRb SINE MIR 47 128 -140 3 1673 3449 33 0 8 chr4 142637145 142637544 -12992576 + MTA_Mm LTR MaLR 1 396 0 3 1673 744 271 13 0 chr4 142637728 142637883 -12992237 + MTEb LTR MaLR 1 157 -222 3 1673 900 271 77 0 chr4 142638183 142638404 -12991716 + MTEb LTR MaLR 128 365 -14 3 1673 778 258 12 163 chr4 142639631 142639878 -12990242 + B4A SINE B4 2 215 -77 3 1673 222 37 0 0 chr4 142639878 142639905 -12990215 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 3 1673 778 258 12 163 chr4 142639905 142640000 -12990120 + B4A SINE B4 216 292 0 3 1673 1676 231 63 11 chr4 142640686 142641067 -12989053 - MTD LTR MaLR 0 419 19 3 1673 677 203 8 108 chr4 142641572 142641786 -12988334 + ORR1C2 LTR MaLR 1 204 -190 3 1673 225 83 0 0 chr4 142641786 142641822 -12988298 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1673 707 149 0 0 chr4 142641831 142641938 -12988182 - B2_Mm2 SINE B2 -88 107 1 3 1673 273 154 0 37 chr4 142641939 142641976 -12988144 + ORR1C2 LTR MaLR 130 164 -214 3 1673 198 128 0 0 chr4 142641976 142642015 -12988105 + (CCTG)n Simple_repeat Simple_repeat 1 39 0 3 1673 273 162 0 58 chr4 142642015 142642040 -12988080 + ORR1C2 LTR MaLR 165 186 -188 3 1673 533 93 21 0 chr4 142642045 142642142 -12987978 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 3 1673 890 207 13 96 chr4 142642145 142642375 -12987745 + ORR1C2 LTR MaLR 174 384 0 3 1673 369 186 0 0 chr4 142642375 142642433 -12987687 - B3A SINE B2 -139 59 2 3 1673 722 275 39 0 chr4 142642516 142642698 -12987422 + B3A SINE B2 5 193 -5 3 1673 225 275 121 21 chr4 142642963 142643104 -12987016 - Charlie18a DNA MER1_type -82 260 106 3 1673 1814 170 58 67 chr4 142643546 142643906 -12986214 + ORR1B2 LTR MaLR 3 359 -8 3 1673 413 266 117 0 chr4 142644073 142644201 -12985919 - MER5A DNA MER1_type -45 144 2 3 1673 531 0 0 0 chr4 142644250 142644309 -12985811 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1673 180 0 0 0 chr4 142644309 142644328 -12985792 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1673 447 269 0 27 chr4 142644357 142644468 -12985652 - B4A SINE B4 0 292 185 3 1673 346 204 46 93 chr4 142644431 142644539 -12985581 - PB1D9 SINE Alu -6 114 12 3 1673 1115 220 5 5 chr4 142644560 142644770 -12985350 - B3 SINE B2 -6 210 1 3 1673 257 340 18 83 chr4 142645066 142645175 -12984945 + B1F SINE Alu 1 102 -47 3 1673 672 276 70 97 chr4 142647047 142647304 -12982816 + B4 SINE B4 38 287 -5 3 1673 370 281 0 0 chr4 142647730 142647812 -12982308 - B4A SINE B4 0 292 211 3 1673 1823 230 45 25 chr4 142647819 142648216 -12981904 - MTD LTR MaLR -14 405 1 3 1673 975 251 0 5 chr4 142648220 142648416 -12981704 - B4A SINE B4 -96 196 2 3 1673 727 289 4 52 chr4 142649155 142649400 -12980720 - B4 SINE B4 -17 275 80 3 1673 845 291 176 23 chr4 142650957 142651390 -12978730 + MLT1D LTR MaLR 7 505 0 3 1673 522 233 0 0 chr4 142651543 142651723 -12978397 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1673 3112 44 48 15 chr4 142651802 142652194 -12977926 - MTB_Mm LTR MaLR -2 405 1 3 1673 609 124 0 0 chr4 142652199 142652296 -12977824 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1673 824 172 134 56 chr4 142652304 142652483 -12977637 + B3A SINE B2 2 194 -4 3 1673 709 137 10 0 chr4 142652809 142652911 -12977209 + URR1B DNA MER1_type 3 105 -120 3 1673 1112 15 0 0 chr4 142652922 142653053 -12977067 - B1_Mus2 SINE Alu 0 147 17 3 1673 621 127 72 56 chr4 142653054 142653179 -12976941 + URR1B DNA MER1_type 99 225 0 3 1673 239 220 0 0 chr4 142653344 142653394 -12976726 + L1MEg LINE L1 853 902 -5182 3 1673 264 265 40 13 chr4 142653552 142653640 -12976480 + B1F SINE Alu 9 98 -51 3 1673 479 138 11 0 chr4 142653668 142653755 -12976365 + (GGAGA)n Simple_repeat Simple_repeat 1 88 0 3 1673 3262 53 0 8 chr4 142653784 142654183 -12975937 + MTA_Mm LTR MaLR 1 396 0 3 1673 259 335 102 36 chr4 142654183 142654517 -12975603 + L1MEg LINE L1 1025 1380 -4704 3 1673 184 316 9 93 chr4 142655140 142655248 -12974872 + L2 LINE L2 462 560 -2859 3 1673 981 314 11 24 chr4 142656596 142656883 -12973237 + B4 SINE B4 2 284 -8 3 1673 303 333 0 0 chr4 142657072 142657147 -12972973 + G-rich Low_complexity Low_complexity 1 75 0 3 1673 1957 207 66 0 chr4 142657731 142658108 -12972012 + MTD LTR MaLR 10 411 -8 3 1673 1350 234 47 4 chr4 142658980 142659259 -12970861 + B4 SINE B4 2 292 0 3 1673 320 41 0 39 chr4 142659270 142659321 -12970799 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 3 1673 215 186 62 0 chr4 142659331 142659444 -12970676 + (CAGA)n Simple_repeat Simple_repeat 3 122 0 3 1673 323 293 0 24 chr4 142659987 142660071 -12970049 - ID2 SINE ID 0 83 2 3 1673 2126 180 26 36 chr4 142660387 142660808 -12969312 + MTC LTR MaLR 5 421 0 3 1673 744 338 23 5 chr4 142660809 142661029 -12969091 - MER58A DNA MER1_type 0 224 1 3 1673 208 250 0 0 chr4 142661246 142661290 -12968830 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1673 576 0 0 0 chr4 142661522 142661586 -12968534 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1673 336 48 0 0 chr4 142662107 142662149 -12967971 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1673 396 335 17 52 chr4 142662512 142662668 -12967452 - MIR SINE MIR -109 159 1 3 1673 258 32 0 0 chr4 142664225 142664256 -12965864 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 1673 669 148 93 0 chr4 142665265 142665373 -12964747 - PB1D9 SINE Alu 0 120 3 3 1673 328 294 92 0 chr4 142665820 142665929 -12964191 + L1MEg LINE L1 1846 1964 -4120 3 1673 1410 233 14 141 chr4 142666343 142666547 -12963573 + MTE2a LTR MaLR 1 173 -206 3 1673 553 269 163 0 chr4 142666547 142666688 -12963432 + RSINE1 SINE B4 2 165 0 3 1673 1410 233 14 141 chr4 142666688 142666917 -12963203 + MTE2a LTR MaLR 174 379 0 3 1673 853 289 101 10 chr4 142667036 142667333 -12962787 + MLT1A0 LTR MaLR 1 324 -41 3 1673 195 42 0 0 chr4 142667574 142667598 -12962522 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1673 1195 244 30 75 chr4 142667656 142668028 -12962092 - ORR1E LTR MaLR -4 355 1 3 1673 468 333 73 0 chr4 142668083 142668233 -12961887 - B4A SINE B4 -130 162 2 3 1673 406 238 97 30 chr4 142668359 142668393 -12961727 + B4 SINE B4 47 89 -203 3 1673 689 109 6 11 chr4 142668393 142668510 -12961610 + B1_Mus1 SINE Alu 1 120 0 3 1673 244 238 168 71 chr4 142669356 142669469 -12960651 - MLT1A LTR MaLR -23 367 244 3 1673 280 299 52 46 chr4 142669624 142669857 -12960263 + ORR1E LTR MaLR 34 256 -111 3 1673 781 37 18 0 chr4 142669898 142670007 -12960113 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1673 402 285 69 56 chr4 142670092 142670252 -12959868 - MLT1A LTR MaLR -157 217 56 3 1673 214 298 83 0 chr4 142670454 142670538 -12959582 - MIRm SINE MIR -124 152 62 3 1673 1285 241 36 4 chr4 142670792 142671071 -12959049 + B4 SINE B4 5 292 0 3 1673 699 205 17 0 chr4 142671283 142671434 -12958686 + ORR1C2 LTR MaLR 1 132 -242 3 1673 870 193 0 0 chr4 142671460 142671756 -12958364 + CT-rich Low_complexity Low_complexity 1 296 0 3 1673 1203 151 19 37 chr4 142671756 142671970 -12958150 + ORR1C2 LTR MaLR 174 383 -1 3 1673 800 273 32 72 chr4 142671971 142672109 -12958011 - L1M4 LINE L1 -391 5792 5680 3 1673 225 0 0 0 chr4 142672109 142672134 -12957986 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1673 800 223 51 9 chr4 142672134 142672314 -12957806 - L1M4 LINE L1 -503 5681 5497 3 1673 268 315 50 21 chr4 142672755 142673037 -12957083 + L1MEg LINE L1 1768 2057 -4185 3 1673 1089 135 12 12 chr4 142673060 142673232 -12956888 + B2_Mm2 SINE B2 1 172 -23 3 1673 471 181 0 0 chr4 142673234 142673259 -12956861 + polypurine Low_complexity Low_complexity 1 25 0 3 1673 561 30 0 0 chr4 142673259 142673326 -12956794 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 3 1673 471 181 0 0 chr4 142673326 142673394 -12956726 + polypurine Low_complexity Low_complexity 26 93 0 3 1673 180 273 0 0 chr4 142673439 142673494 -12956626 + GA-rich Low_complexity Low_complexity 6 60 0 3 1673 1194 25 13 13 chr4 142673494 142673653 -12956467 + (GGAAA)n Simple_repeat Simple_repeat 3 161 0 3 1673 297 312 0 51 chr4 142673671 142673769 -12956351 + PB1D10 SINE Alu 10 102 -15 3 1673 483 219 12 24 chr4 142673785 142674038 -12956082 + GA-rich Low_complexity Low_complexity 1 249 0 3 1673 313 354 44 44 chr4 142674227 142674475 -12955645 + L1MEg LINE L1 4916 5163 -983 3 1673 8568 24 6 1 chr4 142674475 142675448 -12954672 - RLTR13A3 LTR ERVK 0 978 1 3 1673 934 287 33 21 chr4 142675476 142675718 -12954402 + B4A SINE B4 41 285 -7 3 1673 1302 268 72 32 chr4 142675848 142676249 -12953871 - MTD LTR MaLR -2 417 1 3 1673 320 315 52 19 chr4 142676778 142676992 -12953128 + L1MEg LINE L1 5402 5624 -555 3 1673 1319 237 115 17 chr4 142676992 142677359 -12952761 + MTD LTR MaLR 1 399 -20 3 1673 245 225 173 32 chr4 142677364 142677520 -12952600 + L1MEg LINE L1 5622 5799 -363 3 1673 225 65 0 0 chr4 142677789 142677820 -12952300 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1673 284 205 0 37 chr4 142677825 142677906 -12952214 + CT-rich Low_complexity Low_complexity 5 82 0 3 1673 207 125 0 0 chr4 142677908 142677948 -12952172 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1673 1189 61 0 0 chr4 142677949 142678096 -12952024 - B1_Mus2 SINE Alu 0 147 1 3 1673 223 140 20 20 chr4 142678096 142678147 -12951973 + CT-rich Low_complexity Low_complexity 5 55 0 3 1673 407 349 45 73 chr4 142678147 142678394 -12951726 - B4 SINE B4 -38 254 15 3 1673 518 242 101 32 chr4 142679010 142679168 -12950952 + B4A SINE B4 1 169 -123 3 1673 1043 96 270 0 chr4 142679934 142680112 -12950008 + URR1A DNA MER1_type 1 226 0 4 1673 523 306 19 0 chr4 142680261 142680421 -12949699 - RSINE1 SINE B4 -1 164 2 4 1673 1223 193 19 0 chr4 142680529 142680741 -12949379 + B3 SINE B2 1 216 0 4 1673 504 259 145 0 chr4 142680749 142680879 -12949241 + B4 SINE B4 79 227 -65 4 1673 520 262 78 23 chr4 142680879 142681008 -12949112 + RSINE1 SINE B4 2 137 -28 4 1673 369 58 0 0 chr4 142681011 142681063 -12949057 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1673 511 295 131 57 chr4 142681294 142681592 -12948528 + MLT1B LTR MaLR 4 323 -67 4 1673 251 314 107 33 chr4 142682817 142682855 -12947265 - BC1_Mm scRNA scRNA -20 132 2 4 1673 374 259 0 36 chr4 142682855 142682939 -12947181 - ID SINE ID -142 82 2 4 1673 188 339 51 0 chr4 142682961 142683020 -12947100 + L2c LINE L2 3141 3202 -185 4 1673 777 277 28 76 chr4 142683248 142683283 -12946837 + MLT1B LTR MaLR 31 62 -328 4 1673 2499 152 47 0 chr4 142683283 142683684 -12946436 - MTC LTR MaLR -1 420 1 4 1673 777 277 28 76 chr4 142683684 142683937 -12946183 + MLT1B LTR MaLR 63 305 -85 4 1673 1001 171 0 64 chr4 142684203 142684230 -12945890 - B2_Mm2 SINE B2 -18 177 154 4 1673 405 0 0 0 chr4 142684230 142684275 -12945845 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1673 1001 171 0 64 chr4 142684275 142684435 -12945685 - B2_Mm2 SINE B2 -42 153 2 4 1673 430 324 51 36 chr4 142684757 142684952 -12945168 + RMER15 LTR ERVL 356 553 -22 4 1673 707 137 0 0 chr4 142685043 142685145 -12944975 + B3 SINE B2 1 102 -114 4 1673 1911 198 88 5 chr4 142685511 142685896 -12944224 - MTD LTR MaLR -2 417 1 4 1673 3742 203 64 21 chr4 142686076 142686900 -12943220 + RLTR25B LTR ERVK 3 862 -166 4 1673 230 222 53 138 chr4 142686994 142687088 -12943032 + RLTR25B LTR ERVK 757 842 -186 4 1673 767 48 10 0 chr4 142687088 142687192 -12942928 + (GA)n Simple_repeat Simple_repeat 1 105 0 4 1673 360 0 0 0 chr4 142687222 142687262 -12942858 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1673 365 365 0 0 chr4 142687271 142687449 -12942671 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 1673 184 306 70 12 chr4 142688290 142688376 -12941744 + MIRc SINE MIR 60 150 -118 4 1673 708 308 45 0 chr4 142688636 142688834 -12941286 - ID_B1 SINE B4 -17 207 1 4 1673 281 294 24 0 chr4 142688947 142689032 -12941088 - MIR SINE MIR -66 142 56 4 1673 493 271 44 88 chr4 142689899 142690081 -12940039 - MER53 DNA hAT -1 192 19 4 1673 431 243 29 0 chr4 142690105 142690208 -12939912 - RMER15 LTR ERVL -17 558 453 4 1673 2715 61 0 15 chr4 142690810 142691142 -12938978 + ORR1A2 LTR MaLR 1 327 0 4 1673 487 325 0 8 chr4 142691675 142691802 -12938318 + RSINE1 SINE B4 11 136 -29 4 1673 396 237 75 27 chr4 142693213 142693358 -12936762 + RSINE1 SINE B4 3 160 -5 4 1673 382 250 61 20 chr4 142693382 142693480 -12936640 + B4 SINE B4 86 187 -105 4 1673 288 283 62 62 chr4 142693480 142693495 -12936625 + PB1D9 SINE Alu 1 113 -7 4 1673 219 355 26 0 chr4 142694070 142694146 -12935974 + MIRc SINE MIR 47 124 -144 4 1673 1558 158 91 172 chr4 142694402 142694844 -12935276 - MTD LTR MaLR -13 406 1 4 1673 547 269 58 79 chr4 142694940 142695130 -12934990 + RMER15 LTR ERVL 286 471 -104 4 1673 992 224 15 0 chr4 142695133 142695334 -12934786 + B3 SINE B2 9 212 -4 4 1673 362 181 213 28 chr4 142695349 142695393 -12934727 + RMER15 LTR ERVL 448 497 -78 4 1673 399 41 0 0 chr4 142695393 142695442 -12934678 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 1673 362 181 213 28 chr4 142695442 142695472 -12934648 + RMER15 LTR ERVL 498 527 -48 4 1673 366 23 0 0 chr4 142695472 142695515 -12934605 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1673 362 181 213 28 chr4 142695515 142695547 -12934573 + RMER15 LTR ERVL 528 575 0 4 1673 484 225 39 70 chr4 142696258 142696443 -12933677 + MTD LTR MaLR 226 389 -30 4 1673 316 268 101 71 chr4 142696482 142696651 -12933469 + MLT2B1 LTR ERVL 338 511 -56 4 1673 207 0 0 0 chr4 142696652 142696675 -12933445 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 4 1673 537 280 14 0 chr4 142696870 142697028 -12933092 + B3 SINE B2 6 168 -30 4 1673 726 72 0 0 chr4 142697491 142697588 -12932532 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 1673 419 112 12 0 chr4 142699128 142699208 -12930912 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1673 335 277 107 0 chr4 142699633 142699745 -12930375 - PB1 SINE Alu -3 124 1 4 1673 252 0 0 0 chr4 142699931 142699959 -12930161 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 4 1673 272 279 619 35 chr4 142700523 142700670 -12929450 + MLT1A LTR MaLR 18 250 -124 4 1673 239 175 154 123 chr4 142700666 142700731 -12929389 + RSINE1 SINE B4 93 159 -6 4 1673 307 221 40 50 chr4 142701173 142701273 -12928847 - MLT1A LTR MaLR 0 374 276 4 1673 352 266 195 0 chr4 142701275 142701388 -12928732 - MIRc SINE MIR -125 143 5 4 1673 243 315 27 14 chr4 142702141 142702155 -12927965 + ID SINE ID 67 81 -143 4 1673 370 291 27 18 chr4 142702155 142702267 -12927853 + PB1D10 SINE Alu 1 113 -4 4 1673 192 250 0 0 chr4 142702300 142702348 -12927772 - MIR SINE MIR -106 156 109 4 1673 248 320 30 90 chr4 142702385 142702437 -12927683 + MER20 DNA MER1_type 33 84 -135 4 1673 363 23 0 0 chr4 142702437 142702481 -12927639 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1673 248 320 30 90 chr4 142702481 142702562 -12927558 + MER20 DNA MER1_type 85 158 -61 4 1673 311 263 45 153 chr4 142702589 142702746 -12927374 - Tigger7 DNA MER2_type 0 2491 2352 4 1673 450 284 82 43 chr4 142702687 142702751 -12927369 + ID_B1 SINE B4 15 205 -19 4 1673 541 217 83 0 chr4 142702751 142702871 -12927249 + B1F SINE Alu 1 130 -19 4 1673 214 322 78 0 chr4 142703230 142703320 -12926800 - MIRc SINE MIR -51 217 121 4 1673 294 370 0 29 chr4 142704756 142704895 -12925225 + G-rich Low_complexity Low_complexity 6 140 0 4 1673 503 205 274 12 chr4 142705482 142705650 -12924470 + ID_B1 SINE B4 9 220 -4 4 1673 321 89 0 0 chr4 142706253 142706298 -12923822 + (GGGGA)n Simple_repeat Simple_repeat 3 47 0 4 1673 558 0 0 0 chr4 142706887 142706949 -12923171 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1673 250 308 11 11 chr4 142707214 142707306 -12922814 + MIRb SINE MIR 60 151 -117 4 1673 1214 56 0 0 chr4 142707330 142707474 -12922646 + B1_Mm SINE Alu 4 147 0 4 1673 214 331 80 29 chr4 142707580 142707717 -12922403 - MIRb SINE MIR -93 175 32 4 1673 355 285 191 41 chr4 142708320 142708514 -12921606 + B4A SINE B4 12 234 -58 4 1673 215 312 50 0 chr4 142710524 142710604 -12919516 - MIR SINE MIR -147 115 32 4 1673 718 264 86 0 chr4 142710798 142710961 -12919159 - B4 SINE B4 -2 290 114 4 1673 234 0 0 0 chr4 142711749 142711775 -12918345 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 4 1673 475 294 198 22 chr4 142711850 142712088 -12918032 - B4 SINE B4 -6 286 7 4 1673 288 0 0 0 chr4 142715585 142715617 -12914503 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1673 362 252 26 104 chr4 142716183 142716298 -12913822 - PB1D9 SINE Alu -2 118 13 4 1673 33 0 0 0 chr4 142717774 142717807 -12912313 + AT_rich Low_complexity Low_complexity 1 33 0 4 1673 378 147 0 0 chr4 142723421 142723489 -12906631 + (GGA)n Simple_repeat Simple_repeat 2 69 0 4 1673 357 177 0 0 chr4 142725746 142725825 -12904295 + CT-rich Low_complexity Low_complexity 3 81 0 4 1673 243 0 0 0 chr4 142726546 142726573 -12903547 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1673 1265 75 46 11 chr4 142726581 142726756 -12903364 + B2_Mm2 SINE B2 1 181 -14 4 1673 188 304 59 51 chr4 142727102 142727220 -12902900 - L2 LINE L2 -744 2675 2557 4 1673 3994 64 3 5 chr4 142727263 142727784 -12902336 + L1Md_F2 LINE L1 5103 5585 -298 4 1673 8270 47 1 0 chr4 142727785 142728769 -12901351 + L1Md_F2 LINE L1 5587 6571 -11 4 1673 845 265 190 6 chr4 142728968 142729294 -12900826 + MTD LTR MaLR 33 418 -1 4 1673 967 137 6 6 chr4 142730043 142730212 -12899908 - URR1A DNA MER1_type 0 226 58 4 1673 487 139 206 36 chr4 142730518 142730647 -12899473 - B1_Mus1 SINE Alu 0 148 1 4 1673 1149 94 6 0 chr4 142730679 142730849 -12899271 - B2_Mm1t SINE B2 -22 171 1 4 1673 195 42 0 0 chr4 142731249 142731273 -12898847 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1673 350 145 58 0 chr4 142731819 142731888 -12898232 - PB1D9 SINE Alu -19 101 29 4 1673 225 0 0 0 chr4 142733330 142733355 -12896765 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1674 904 59 96 7 chr4 142738742 142738858 -12891262 + B1_Mus1 SINE Alu 1 122 -26 4 1674 183 42 0 0 chr4 142738858 142738882 -12891238 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 4 1674 904 59 96 7 chr4 142738882 142738901 -12891219 + B1_Mus1 SINE Alu 123 146 -2 4 1674 465 294 72 0 chr4 142739326 142739479 -12890641 - RSINE1 SINE B4 0 165 2 4 1674 276 53 0 0 chr4 142741853 142741891 -12888229 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1674 450 0 0 0 chr4 142741891 142741941 -12888179 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1674 243 257 12 98 chr4 142742320 142742402 -12887718 + MT2B LTR ERVL 170 244 -357 4 1674 274 237 105 21 chr4 142742329 142742424 -12887696 + PB1D10 SINE Alu 15 117 0 4 1674 287 330 42 11 chr4 142745193 142745288 -12884832 - ID_B1 SINE B4 -45 179 82 4 1674 728 214 7 46 chr4 142745752 142745904 -12884216 - B1_Mus2 SINE Alu -1 146 1 4 1674 383 247 0 47 chr4 142746350 142746435 -12883685 + RSINE1 SINE B4 4 84 -81 4 1674 1163 41 7 7 chr4 142748475 142748622 -12881498 + B1_Mm SINE Alu 1 147 0 4 1674 218 273 0 18 chr4 142749601 142749657 -12880463 + GA-rich Low_complexity Low_complexity 1 55 0 4 1674 272 27 27 0 chr4 142749662 142749699 -12880421 + (TAGG)n Simple_repeat Simple_repeat 2 39 0 4 1674 897 132 35 7 chr4 142750278 142750423 -12879697 + B1_Mur4 SINE Alu 2 150 0 5 1674 198 71 0 0 chr4 142750589 142750617 -12879503 + (TAA)n Simple_repeat Simple_repeat 1 28 0 5 1674 35 24 0 0 chr4 142751908 142751950 -12878170 + GC_rich Low_complexity Low_complexity 1 42 0 5 1674 28 71 0 0 chr4 142752193 142752249 -12877871 + GC_rich Low_complexity Low_complexity 1 56 0 5 1674 741 65 192 16 chr4 142752446 142752571 -12877549 - B1_Mus1 SINE Alu 0 148 2 5 1674 281 288 71 61 chr4 142753167 142753363 -12876757 + L1MC4a LINE L1 7120 7317 -565 5 1674 657 190 34 47 chr4 142753670 142753819 -12876301 - B1_Mur1 SINE Alu 0 149 3 5 1674 999 77 0 27 chr4 142753873 142754019 -12876101 + ORR1A2 LTR MaLR 1 142 -185 5 1674 291 158 0 0 chr4 142754018 142754075 -12876045 + ORR1A2-int LTR MaLR 535 591 -1201 5 1674 468 232 10 0 chr4 142754043 142754054 -12876066 + MT2B LTR ERVL 157 168 -433 5 1674 217 269 119 46 chr4 142754054 142754163 -12875957 + PB1D7 SINE Alu 4 120 0 5 1674 7288 120 10 18 chr4 142754166 142754486 -12875634 + ORR1A2-int LTR MaLR 721 1041 -922 5 1674 1080 70 28 0 chr4 142754486 142754628 -12875492 + B1_Mus1 SINE Alu 3 148 0 5 1674 657 0 0 0 chr4 142754631 142754704 -12875416 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1674 7288 120 10 18 chr4 142754704 142755632 -12874488 + ORR1A2-int LTR MaLR 1042 1963 0 5 1674 2147 86 16 6 chr4 142755632 142755949 -12874171 + ORR1A2 LTR MaLR 1 320 -7 5 1674 884 80 21 14 chr4 142755997 142756137 -12873983 + B2_Mm2 SINE B2 55 195 0 5 1674 182 37 0 36 chr4 142757347 142757375 -12872745 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1674 961 32 8 0 chr4 142757380 142757506 -12872614 + B1_Mus2 SINE Alu 21 147 0 5 1674 243 88 0 0 chr4 142759088 142759122 -12870998 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1674 249 243 28 28 chr4 142759416 142759488 -12870632 + RLTR10B2 LTR ERVK 248 319 -46 5 1674 621 0 0 0 chr4 142760997 142761066 -12869054 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1674 225 0 0 0 chr4 142761257 142761282 -12868838 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 5 1674 207 139 0 0 chr4 142761301 142761337 -12868783 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1674 225 83 0 0 chr4 142762353 142762389 -12867731 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 5 1674 817 166 26 46 chr4 142762422 142762574 -12867546 + B1_Mur1 SINE Alu 1 149 0 5 1674 1174 62 0 7 chr4 142762936 142763083 -12867037 + B1_Mus2 SINE Alu 2 147 0 5 1674 862 214 56 0 chr4 142764294 142764472 -12865648 + B3 SINE B2 3 190 -26 5 1674 374 53 0 81 chr4 142764550 142764561 -12865559 - B1_Mur4 SINE Alu -4 146 138 5 1674 225 0 0 0 chr4 142764561 142764586 -12865534 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1674 374 53 0 81 chr4 142764586 142764636 -12865484 - B1_Mur4 SINE Alu -13 137 90 5 1674 301 295 26 38 chr4 142765125 142765312 -12864808 + L1M5 LINE L1 5576 5762 -362 5 1674 287 319 22 0 chr4 142765719 142765810 -12864310 - RSINE1 SINE B4 -72 93 1 5 1674 277 263 193 8 chr4 142766094 142766213 -12863907 + MLT1A1 LTR MaLR 268 408 0 5 1674 353 309 64 0 chr4 142766272 142766382 -12863738 + PB1D10 SINE Alu 1 117 0 5 1674 345 311 9 36 chr4 142766505 142766615 -12863505 + PB1D10 SINE Alu 3 109 -8 5 1674 1119 107 30 0 chr4 142766850 142767019 -12863101 + B2_Mm1t SINE B2 1 174 -19 5 1674 303 103 404 19 chr4 142767060 142767166 -12862954 + B2_Mm2 SINE B2 47 193 -2 5 1674 697 196 45 8 chr4 142771644 142771778 -12858342 - B1_Mm SINE Alu -6 141 3 5 1674 568 172 14 56 chr4 142771778 142771920 -12858200 + B1_Mur3 SINE Alu 13 148 -1 5 1674 618 100 0 0 chr4 142772557 142772657 -12857463 + (CA)n Simple_repeat Simple_repeat 2 101 0 5 1674 226 209 0 23 chr4 142773540 142773584 -12856536 + polypyrimidine Low_complexity Low_complexity 3 45 0 5 1674 1500 82 0 5 chr4 142773621 142773817 -12856303 - B2_Mm2 SINE B2 0 195 1 5 1674 21 0 0 0 chr4 142773827 142773848 -12856272 + AT_rich Low_complexity Low_complexity 1 21 0 5 1674 752 196 14 0 chr4 142773850 142773988 -12856132 + B1_Mur3 SINE Alu 2 141 -8 5 1674 306 0 0 0 chr4 142773993 142774027 -12856093 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 5 1674 405 81 0 0 chr4 142774029 142774091 -12856029 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1674 725 259 47 0 chr4 142774092 142774262 -12855858 - B3 SINE B2 -29 187 10 5 1674 451 330 104 57 chr4 142774442 142774722 -12855398 - MER2 DNA MER2_type -43 302 10 5 1674 1062 64 57 0 chr4 142774764 142774904 -12855216 + B1_Mus1 SINE Alu 1 148 0 5 1674 533 117 0 52 chr4 142774906 142775041 -12855079 + GA-rich Low_complexity Low_complexity 2 129 0 5 1674 853 26 17 17 chr4 142775136 142775255 -12854865 + B1_Mus2 SINE Alu 29 147 0 5 1674 307 327 49 37 chr4 142777830 142777992 -12852128 + RSINE1 SINE B4 2 165 0 5 1674 29 28 0 0 chr4 142778745 142778781 -12851339 + AT_rich Low_complexity Low_complexity 1 36 0 5 1674 219 275 171 18 chr4 142779500 142779599 -12850521 + B3A SINE B2 68 185 -13 5 1674 1206 54 0 0 chr4 142779599 142779746 -12850374 - B1_Mm SINE Alu 0 147 1 5 1674 219 275 171 18 chr4 142779746 142779757 -12850363 + B3A SINE B2 186 195 -3 5 1674 21 0 0 0 chr4 142779955 142779976 -12850144 + AT_rich Low_complexity Low_complexity 1 21 0 5 1674 777 230 0 0 chr4 142780259 142780398 -12849722 + B1_Mur3 SINE Alu 3 141 -8 5 1674 23 0 0 0 chr4 142780398 142780421 -12849699 + AT_rich Low_complexity Low_complexity 1 23 0 5 1674 251 246 0 0 chr4 142781757 142781814 -12848306 + MER47C DNA MER2_type 41 97 0 5 1674 315 0 0 0 chr4 142783609 142783644 -12846476 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1674 804 150 0 22 chr4 142783760 142783896 -12846224 - B1_Mur3 SINE Alu 0 149 17 5 1674 304 256 128 0 chr4 142785463 142785541 -12844579 + PB1D10 SINE Alu 6 93 -24 5 1674 840 128 15 8 chr4 142785564 142785721 -12844399 + B2_Mm2 SINE B2 2 163 -53 5 1674 330 152 0 0 chr4 142785721 142785780 -12844340 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1674 369 0 0 0 chr4 142785912 142785953 -12844167 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1674 315 267 120 0 chr4 142786002 142786077 -12844043 + ID_B1 SINE B4 87 170 -54 5 1674 311 276 143 0 chr4 142786077 142786100 -12844020 + PB1D10 SINE Alu 6 117 0 5 1674 35 24 0 0 chr4 142786100 142786142 -12843978 + AT_rich Low_complexity Low_complexity 1 42 0 5 1674 198 0 0 0 chr4 142786513 142786535 -12843585 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1674 1241 41 0 0 chr4 142786535 142786682 -12843438 - B1_Mus2 SINE Alu 0 147 1 5 1674 767 205 67 103 chr4 142787528 142787751 -12842369 + B3 SINE B2 2 216 0 5 1674 977 62 90 7 chr4 142787763 142787908 -12842212 - B2_Mm2 SINE B2 -26 169 13 5 1674 411 183 0 0 chr4 142789088 142789170 -12840950 + T-rich Low_complexity Low_complexity 1 82 0 5 1674 216 103 26 0 chr4 142789263 142789302 -12840818 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1674 1148 69 21 0 chr4 142789303 142789448 -12840672 - B1_Mus1 SINE Alu 0 148 1 5 1674 1278 77 32 22 chr4 142789451 142789636 -12840484 - B2_Mm2 SINE B2 -8 187 1 5 1674 518 275 43 0 chr4 142789727 142789865 -12840255 + RSINE1 SINE B4 22 165 0 5 1674 795 322 36 11 chr4 142790084 142790363 -12839757 - B4A SINE B4 -4 288 3 5 1674 437 262 73 18 chr4 142790387 142790496 -12839624 + PB1 SINE Alu 1 115 -12 5 1674 183 42 0 0 chr4 142790646 142790670 -12839450 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1674 1271 92 32 5 chr4 142791037 142791223 -12838897 + B2_Mm1t SINE B2 1 191 -2 5 1674 902 230 20 5 chr4 142791228 142791425 -12838695 - B3 SINE B2 -12 204 5 5 1674 617 284 137 0 chr4 142791665 142791848 -12838272 - B3 SINE B2 -5 211 4 5 1674 270 278 144 0 chr4 142791854 142791944 -12838176 - PB1D10 SINE Alu -5 112 10 5 1674 435 224 55 27 chr4 142791888 142791998 -12838122 - ID_B1 SINE B4 -78 146 34 5 1674 547 282 36 60 chr4 142792564 142792730 -12837390 - RSINE1 SINE B4 0 165 4 5 1674 864 188 137 0 chr4 142792964 142793161 -12836959 + URR1B DNA MER1_type 1 224 -1 5 1674 304 233 30 62 chr4 142793176 142793308 -12836812 + B4A SINE B4 2 124 -168 5 1674 365 253 0 0 chr4 142793849 142793924 -12836196 + ID2 SINE ID 4 78 -5 5 1674 2678 213 247 25 chr4 142794486 142795323 -12834797 + RMER1B Other Other 44 1066 0 5 1674 180 111 0 0 chr4 142795325 142795352 -12834768 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 1674 1153 208 232 7 chr4 142796300 142796610 -12833510 - MTD LTR MaLR -38 381 2 5 1674 1295 83 22 11 chr4 142797340 142797523 -12832597 + B2_Mm2 SINE B2 2 186 -9 5 1674 417 39 0 0 chr4 142797561 142797612 -12832508 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1674 204 40 0 0 chr4 142798759 142798784 -12831336 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1674 25 0 0 0 chr4 142799150 142799175 -12830945 + AT_rich Low_complexity Low_complexity 1 25 0 5 1674 365 289 94 6 chr4 142799465 142799646 -12830474 + MER20 DNA MER1_type 23 219 0 5 1674 264 200 188 0 chr4 142800551 142800636 -12829484 + L1M5 LINE L1 5756 5856 -268 5 1674 206 118 0 0 chr4 142801461 142801495 -12828625 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1674 21 36 0 0 chr4 142802413 142802441 -12827679 + GC_rich Low_complexity Low_complexity 1 28 0 5 1674 24 0 0 0 chr4 142802576 142802600 -12827520 + GC_rich Low_complexity Low_complexity 1 24 0 5 1674 374 216 35 35 chr4 142802904 142803019 -12827101 + PB1D9 SINE Alu 6 120 0 5 1674 814 310 105 36 chr4 142804173 142804611 -12825509 - MLT1D LTR MaLR -37 468 1 5 1674 21 0 0 0 chr4 142805174 142805195 -12824925 + AT_rich Low_complexity Low_complexity 1 21 0 5 1674 1123 88 0 0 chr4 142805256 142805404 -12824716 + B1_Mus1 SINE Alu 1 148 0 6 1674 960 76 28 251 chr4 142805644 142805891 -12824229 + B2_Mm1t SINE B2 1 192 -1 6 1674 360 94 0 0 chr4 142805962 142806015 -12824105 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1674 441 0 0 0 chr4 142806053 142806102 -12824018 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1674 192 97 0 0 chr4 142806246 142806277 -12823843 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 6 1674 239 325 26 17 chr4 142806295 142806411 -12823709 + B1F SINE Alu 16 132 -17 6 1674 1587 37 21 0 chr4 142806459 142806648 -12823472 + B2_Mm1t SINE B2 1 193 0 6 1674 571 259 36 34 chr4 142807561 142807730 -12822390 - B4A SINE B4 0 292 127 6 1674 969 9 0 0 chr4 142808321 142808431 -12821689 + (CTTTG)n Simple_repeat Simple_repeat 4 113 0 6 1674 207 0 0 0 chr4 142808433 142808456 -12821664 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1674 1027 76 0 0 chr4 142808484 142808629 -12821491 - B1_Mus2 SINE Alu -1 146 2 6 1674 384 40 0 0 chr4 142808629 142808679 -12821441 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 6 1674 400 230 133 0 chr4 142808679 142808792 -12821328 - ID_B1 SINE B4 -12 212 85 6 1674 1042 162 91 10 chr4 142808849 142809048 -12821072 + B3 SINE B2 2 216 0 6 1674 28 0 0 0 chr4 142809048 142809076 -12821044 + AT_rich Low_complexity Low_complexity 1 28 0 6 1674 198 98 0 90 chr4 142809670 142809737 -12820383 + T-rich Low_complexity Low_complexity 1 61 0 6 1674 1172 75 0 0 chr4 142810034 142810180 -12819940 + B1_Mus2 SINE Alu 2 147 0 6 1674 747 0 0 0 chr4 142810320 142810403 -12819717 + (TTC)n Simple_repeat Simple_repeat 2 84 0 6 1674 1187 83 6 6 chr4 142810407 142810577 -12819543 - B2_Mm2 SINE B2 -25 170 1 6 1674 1395 90 0 26 chr4 142810835 142811028 -12819092 - B2_Mm2 SINE B2 -3 192 5 6 1674 1181 75 0 0 chr4 142811252 142811399 -12818721 + B1_Mus2 SINE Alu 1 147 0 6 1674 1105 111 0 16 chr4 142811402 142811585 -12818535 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1674 236 306 70 70 chr4 142811737 142811909 -12818211 + MER20 DNA MER1_type 12 183 -36 6 1674 246 95 0 0 chr4 142812038 142812080 -12818040 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1674 339 65 0 0 chr4 142812139 142812185 -12817935 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 1674 1165 70 6 0 chr4 142812185 142812343 -12817777 - B2_Mm1a SINE B2 -33 160 2 6 1674 356 304 0 10 chr4 142812368 142812471 -12817649 + ORR1D2 LTR MaLR 1 102 -268 6 1674 1056 43 7 0 chr4 142812504 142812643 -12817477 - B1_Mm SINE Alu 0 147 8 6 1674 784 272 92 13 chr4 142812643 142812870 -12817250 + ORR1D2 LTR MaLR 88 332 -38 6 1674 317 250 12 0 chr4 142812985 142813065 -12817055 + ID4_ SINE ID 1 81 -2 6 1674 3378 266 106 37 chr4 142813255 142813313 -12816807 + Lx8 LINE L1 6122 6195 -1278 6 1674 1241 78 0 6 chr4 142813313 142813493 -12816627 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1674 3378 266 106 37 chr4 142813493 142814257 -12815863 + Lx8 LINE L1 6196 7023 -450 6 1674 1404 45 16 43 chr4 142814257 142814442 -12815678 + B2_Mm2 SINE B2 2 181 -14 6 1674 3378 266 106 37 chr4 142814442 142814883 -12815237 + Lx8 LINE L1 7024 7473 0 6 1674 585 293 20 62 chr4 142814912 142815156 -12814964 - L1MB3 LINE L1 -7 6176 5943 6 1674 701 176 8 15 chr4 142815413 142815546 -12814574 + B1_Mur1 SINE Alu 18 149 0 6 1674 471 78 0 0 chr4 142816436 142816500 -12813620 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1674 22 0 0 0 chr4 142816675 142816697 -12813423 + AT_rich Low_complexity Low_complexity 1 22 0 6 1674 533 258 8 0 chr4 142816755 142816875 -12813245 - B1_Mur1 SINE Alu -1 148 28 6 1674 397 228 129 17 chr4 142816883 142816965 -12813155 + B3 SINE B2 84 179 -37 6 1674 456 104 0 0 chr4 142816965 142817032 -12813088 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1674 397 228 129 17 chr4 142817032 142817065 -12813055 + B3 SINE B2 180 212 -4 6 1674 470 184 21 26 chr4 142817091 142817206 -12812914 + PB1D10 SINE Alu 1 117 0 6 1674 359 248 0 95 chr4 142817613 142817737 -12812383 + B1F1 SINE Alu 3 113 -7 6 1674 322 300 10 20 chr4 142817713 142817815 -12812305 - RSINE1 SINE B4 -63 102 2 6 1674 1222 200 0 0 chr4 142818318 142818528 -12811592 + B3 SINE B2 1 210 -6 6 1674 1444 298 98 44 chr4 142818562 142818640 -12811480 + L1MB7 LINE L1 5254 5328 -856 6 1674 829 240 70 5 chr4 142818640 142818841 -12811279 - B3 SINE B2 -2 214 1 6 1674 206 0 69 0 chr4 142818842 142818871 -12811249 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1674 1444 298 98 44 chr4 142818871 142819655 -12810465 + L1MB7 LINE L1 5329 6165 -19 6 1674 1134 73 0 0 chr4 142819674 142819811 -12810309 + B1_Mus2 SINE Alu 2 138 -9 6 1674 495 33 0 0 chr4 142819884 142819945 -12810175 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1674 230 313 0 57 chr4 142820027 142820115 -12810005 + polypurine Low_complexity Low_complexity 6 88 0 6 1674 1154 150 65 5 chr4 142820652 142820853 -12809267 + B3 SINE B2 3 215 -1 6 1674 359 260 25 69 chr4 142821076 142821259 -12808861 + L1M5 LINE L1 2680 2855 -3291 6 1674 1243 27 0 0 chr4 142821403 142821549 -12808571 - B1_Mm SINE Alu 0 147 2 6 1674 198 0 0 0 chr4 142821572 142821594 -12808526 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1674 763 171 47 0 chr4 142821595 142821724 -12808396 - B1_Mur1 SINE Alu -11 138 4 6 1674 225 263 28 39 chr4 142822054 142822236 -12807884 + G-rich Low_complexity Low_complexity 1 180 0 6 1674 526 200 0 28 chr4 142822380 142822488 -12807632 - B1_Mur2 SINE Alu -1 148 44 6 1674 1179 99 5 25 chr4 142822511 142822708 -12807412 + B2_Mm1a SINE B2 1 193 0 6 1674 489 161 69 0 chr4 142822720 142822807 -12807313 + B1_Mur2 SINE Alu 2 94 -55 6 1674 213 167 0 0 chr4 142822823 142822877 -12807243 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1674 417 39 0 0 chr4 142822883 142822934 -12807186 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1674 662 200 113 33 chr4 142822990 142823202 -12806918 - B4A SINE B4 -60 232 4 6 1674 999 72 98 0 chr4 142823419 142823572 -12806548 + B2_Mm2 SINE B2 1 168 -27 6 1674 263 261 167 35 chr4 142823619 142823690 -12806430 - B4 SINE B4 -5 287 115 6 1674 397 248 0 27 chr4 142823690 142823802 -12806318 - PB1D10 SINE Alu -1 116 8 6 1674 263 261 167 35 chr4 142823802 142823814 -12806306 - B4 SINE B4 -5 114 81 6 1674 2100 93 63 3 chr4 142823830 142824133 -12805987 - ORR1A2 LTR MaLR -2 325 5 6 1674 589 234 8 15 chr4 142824329 142824459 -12805661 - B3A SINE B2 -4 194 66 6 1674 572 196 2 26 chr4 142824576 142824726 -12805394 - ORR1D1 LTR MaLR -247 137 1 6 1674 1393 81 11 0 chr4 142825249 142825435 -12804685 - B2_Mm1a SINE B2 -5 188 1 6 1674 609 271 47 12 chr4 142825462 142825634 -12804486 - B4A SINE B4 -67 225 48 6 1674 410 223 156 120 chr4 142825645 142825895 -12804225 - RMER4B LTR ERVK -9 576 318 6 1674 899 41 20 0 chr4 142825891 142826028 -12804092 - B1_Mm SINE Alu 0 150 2 6 1674 1410 65 11 26 chr4 142826237 142826428 -12803692 - B2_Mm2 SINE B2 -7 188 1 6 1674 662 174 38 25 chr4 142826477 142826636 -12803484 - RMER4B LTR ERVK -408 177 17 6 1674 908 69 145 0 chr4 142827559 142827690 -12802430 + B1_Mur4 SINE Alu 1 150 0 6 1674 1191 178 168 153 chr4 142827715 142828238 -12801882 - Lx7 LINE L1 -7 7689 7159 6 1674 385 241 36 18 chr4 142828248 142828358 -12801762 - B1_Mur2 SINE Alu -37 112 1 6 1674 283 266 12 25 chr4 142829439 142829520 -12800600 + B3A SINE B2 46 125 -73 6 1674 927 42 0 0 chr4 142830115 142830234 -12799886 - B1_Mus1 SINE Alu 0 148 30 6 1674 715 222 7 0 chr4 142830366 142830510 -12799610 + B1_Mur3 SINE Alu 3 147 -2 6 1674 782 228 200 0 chr4 142830520 142830700 -12799420 - B3 SINE B2 0 216 1 6 1674 1068 82 0 20 chr4 142830735 142830885 -12799235 + B1_Mus1 SINE Alu 2 148 0 6 1674 189 0 0 0 chr4 142830900 142830921 -12799199 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6 1674 210 71 0 0 chr4 142831033 142831061 -12799059 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1674 406 325 32 8 chr4 142831075 142831199 -12798921 - RSINE1 SINE B4 0 165 39 6 1674 1570 130 19 4 chr4 142831203 142831474 -12798646 - ORR1A4 LTR MaLR -8 321 47 6 1674 234 0 0 0 chr4 142831496 142831522 -12798598 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1674 415 179 8 30 chr4 142833263 142833372 -12796748 - ORR1A3 LTR MaLR -248 146 1 6 1674 235 257 41 41 chr4 142833372 142833413 -12796707 - RSINE1 SINE B4 -122 43 3 6 1674 287 85 0 21 chr4 142833836 142833884 -12796236 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1674 1204 48 0 14 chr4 142833885 142834032 -12796088 - B1_Mus2 SINE Alu -1 146 2 6 1674 21 0 0 0 chr4 142834034 142834055 -12796065 + AT_rich Low_complexity Low_complexity 1 21 0 6 1674 1372 85 26 11 chr4 142834082 142834272 -12795848 + B2_Mm2 SINE B2 3 195 0 6 1674 180 0 0 0 chr4 142834465 142834485 -12795635 + (CAACT)n Simple_repeat Simple_repeat 4 23 0 6 1674 961 125 101 11 chr4 142834524 142834559 -12795561 - B2_Mm2 SINE B2 0 195 162 6 1674 207 69 0 0 chr4 142834559 142834588 -12795532 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 6 1674 961 125 101 11 chr4 142834588 142834622 -12795498 - B2_Mm2 SINE B2 -34 161 110 6 1674 4902 65 17 0 chr4 142834622 142835217 -12794903 - RLTR1D LTR ERV1 0 605 1 6 1674 961 125 101 11 chr4 142835217 142835324 -12794796 - B2_Mm2 SINE B2 -86 109 3 6 1674 726 250 36 50 chr4 142835349 142835538 -12794582 - B3 SINE B2 0 216 26 6 1674 1529 155 171 8 chr4 142835538 142835889 -12794231 - RMER17C LTR ERVK -2 408 1 6 1674 726 250 36 50 chr4 142835889 142835918 -12794202 - B3 SINE B2 -191 25 1 6 1674 453 282 186 0 chr4 142836235 142836359 -12793761 - RSINE1 SINE B4 -7 158 12 6 1674 189 0 0 0 chr4 142836364 142836385 -12793735 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 6 1674 612 209 74 7 chr4 142836427 142836562 -12793558 - B1_Mur1 SINE Alu 0 149 6 6 1674 378 0 0 0 chr4 142836692 142836734 -12793386 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1674 414 237 31 0 chr4 142836808 142836905 -12793215 - ID_B1 SINE B4 -8 216 117 7 1674 365 286 80 27 chr4 142837023 142837210 -12792910 - L1M5 LINE L1 -2605 3541 3345 7 1674 441 0 0 0 chr4 142837255 142837304 -12792816 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1674 1259 52 115 6 chr4 142837339 142837513 -12792607 - B2_Mm2 SINE B2 -1 194 2 7 1674 22 0 0 0 chr4 142837519 142837541 -12792579 + AT_rich Low_complexity Low_complexity 1 22 0 7 1674 1598 16 0 32 chr4 142837616 142837805 -12792315 - B2_Mm1a SINE B2 -9 184 2 7 1674 26 0 0 0 chr4 142837805 142837831 -12792289 + AT_rich Low_complexity Low_complexity 1 26 0 7 1674 1014 194 21 16 chr4 142837832 142838021 -12792099 - B3 SINE B2 -5 211 22 7 1674 880 231 25 20 chr4 142838035 142838238 -12791882 + B3 SINE B2 2 205 -11 7 1674 458 163 11 11 chr4 142838449 142838536 -12791584 - RSINE1 SINE B4 -35 130 44 7 1674 28 0 0 0 chr4 142838536 142838564 -12791556 + AT_rich Low_complexity Low_complexity 1 28 0 7 1674 1218 62 0 0 chr4 142838564 142838710 -12791410 - B1_Mus2 SINE Alu 0 147 2 7 1674 4899 166 8 9 chr4 142838831 142839617 -12790503 - Lx5 LINE L1 -120 6930 6160 7 1674 3119 138 58 22 chr4 142839615 142840150 -12789970 + Lx5 LINE L1 5607 6160 -890 7 1674 416 224 110 11 chr4 142840153 142840266 -12789854 - RLTR12B LTR ERVK -411 157 35 7 1674 561 257 21 35 chr4 142840765 142840910 -12789210 - RSINE1 SINE B4 -21 144 2 7 1674 345 279 29 17 chr4 142840947 142841110 -12789010 - L1MA6 LINE L1 0 6300 6130 7 1674 1172 75 0 0 chr4 142841197 142841343 -12788777 - B1_Mus2 SINE Alu 0 147 2 7 1674 534 295 47 0 chr4 142841343 142841492 -12788628 + B3 SINE B2 54 209 -7 7 1674 388 289 145 12 chr4 142841507 142841749 -12788371 - L1MA6 LINE L1 -205 6095 5822 7 1674 2105 207 22 22 chr4 142841751 142841765 -12788355 + MTD LTR MaLR 5 17 -402 7 1674 261 0 0 0 chr4 142841765 142841794 -12788326 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1674 2105 207 22 22 chr4 142841794 142842194 -12787926 + MTD LTR MaLR 18 419 0 7 1674 333 0 0 0 chr4 142842204 142842241 -12787879 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1674 1037 245 9 9 chr4 142842327 142842537 -12787583 - B3 SINE B2 -1 215 6 7 1674 550 268 0 101 chr4 142842543 142842701 -12787419 - B3A SINE B2 0 198 57 7 1674 369 0 0 0 chr4 142842718 142842759 -12787361 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 7 1674 875 140 0 22 chr4 142842760 142842899 -12787221 - B1_Mur3 SINE Alu -13 136 1 7 1674 310 266 23 46 chr4 142843015 142843145 -12786975 - L1MA6 LINE L1 -525 5775 5649 7 1674 1308 172 113 24 chr4 142843148 142843447 -12786673 - ORR1C1 LTR MaLR 0 378 66 7 1674 631 168 36 64 chr4 142843458 142843616 -12786504 - ORR1D1 LTR MaLR -248 146 1 7 1674 413 297 16 25 chr4 142843774 142843895 -12786225 - PB1D7 SINE Alu 0 120 1 7 1674 342 261 0 74 chr4 142844007 142844092 -12786028 + MT2A LTR ERVL 91 169 -364 7 1674 1218 61 0 0 chr4 142844092 142844239 -12785881 + B1_Mus1 SINE Alu 2 148 0 7 1674 1010 122 78 18 chr4 142844392 142844537 -12785583 + B2_Mm2 SINE B2 1 155 -40 7 1674 495 0 0 0 chr4 142844537 142844592 -12785528 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1674 1010 122 78 18 chr4 142844592 142844613 -12785507 + B2_Mm2 SINE B2 156 177 -18 7 1674 302 217 62 161 chr4 142844644 142844836 -12785284 - MER57D LTR ERV1 -117 294 122 7 1674 600 53 0 0 chr4 142844891 142844967 -12785153 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 7 1674 1166 42 14 0 chr4 142844968 142845112 -12785008 - B1_Mus2 SINE Alu 0 147 2 7 1674 207 186 0 0 chr4 142845262 142845305 -12784815 + A-rich Low_complexity Low_complexity 1 43 0 7 1674 484 258 214 0 chr4 142846075 142846253 -12783867 + B3 SINE B2 1 216 0 7 1674 500 287 0 77 chr4 142846367 142846522 -12783598 + ID_B1 SINE B4 79 221 -3 7 1674 802 223 72 0 chr4 142846529 142846722 -12783398 + B3 SINE B2 1 207 -9 7 1674 903 45 9 0 chr4 142846738 142846850 -12783270 + B1_Mm SINE Alu 26 138 -9 7 1674 183 42 0 0 chr4 142846850 142846874 -12783246 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1674 205 288 0 0 chr4 142846953 142847012 -12783108 + A-rich Low_complexity Low_complexity 1 59 0 7 1674 182 150 0 24 chr4 142847234 142847275 -12782845 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 1674 473 245 0 9 chr4 142847316 142847423 -12782697 + ID_B1 SINE B4 119 224 0 7 1674 435 191 11 22 chr4 142847498 142847680 -12782440 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1674 346 250 0 0 chr4 142847687 142847771 -12782349 + GA-rich Low_complexity Low_complexity 2 85 0 7 1674 512 164 11 33 chr4 142847771 142847954 -12782166 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 7 1674 346 309 64 0 chr4 142848473 142848567 -12781553 - B3A SINE B2 -23 175 76 7 1674 1374 81 22 0 chr4 142849501 142849686 -12780434 - B2_Mm2 SINE B2 0 195 7 7 1674 812 230 180 67 chr4 142849916 142850200 -12779920 - ORR1E LTR MaLR -4 355 40 7 1674 186 43 0 0 chr4 142850200 142850223 -12779897 + (G)n Simple_repeat Simple_repeat 1 23 0 7 1674 395 268 23 45 chr4 142850445 142850578 -12779542 + MLT1A1 LTR MaLR 279 408 0 7 1674 247 302 0 0 chr4 142850799 142850862 -12779258 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1674 801 277 23 59 chr4 142850870 142851173 -12778947 - B4 SINE B4 0 292 1 7 1674 1301 88 101 60 chr4 142852248 142852465 -12777655 + URR1A DNA MER1_type 1 226 0 7 1674 273 289 139 106 chr4 142853082 142853233 -12776887 - B4A SINE B4 -44 248 93 7 1674 312 226 344 26 chr4 142853241 142853436 -12776684 - Lx9 LINE L1 -26 7618 7362 7 1674 1609 319 34 0 chr4 142853436 142853963 -12776157 - Lx9 LINE L1 -677 6967 6423 7 1674 343 140 0 0 chr4 142853978 142854028 -12776092 + HAL1-3A_ME LINE L1 1969 2018 -840 7 1674 228 35 0 0 chr4 142854037 142854066 -12776054 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1674 702 100 0 15 chr4 142854442 142854563 -12775557 + B2_Mm2 SINE B2 2 116 -82 7 1674 416 211 0 0 chr4 142854526 142854602 -12775518 - PB1D10 SINE Alu -35 82 7 7 1674 1138 82 7 0 chr4 142855049 142855195 -12774925 + B1_Mus2 SINE Alu 1 147 0 7 1674 701 161 256 45 chr4 142855287 142855463 -12774657 + B3 SINE B2 4 216 0 7 1674 441 255 0 11 chr4 142855527 142855622 -12774498 + PB1D10 SINE Alu 14 107 -10 7 1674 1091 157 12 132 chr4 142855622 142855666 -12774454 + B3 SINE B2 1 42 -174 7 1674 1249 48 0 0 chr4 142855666 142855812 -12774308 + B1_Mus2 SINE Alu 2 147 0 7 1674 1091 157 12 132 chr4 142855812 142856009 -12774111 + B3 SINE B2 43 213 -3 7 1674 1079 76 0 0 chr4 142856117 142856249 -12773871 - B1_Mus1 SINE Alu -15 133 2 7 1674 22 0 0 0 chr4 142856250 142856272 -12773848 + AT_rich Low_complexity Low_complexity 1 22 0 7 1674 337 241 22 22 chr4 142856306 142856395 -12773725 - RSINE1 SINE B4 -61 104 16 7 1674 820 110 17 0 chr4 142856956 142857074 -12773046 + PB1D9 SINE Alu 1 120 0 7 1674 23 0 0 0 chr4 142857074 142857097 -12773023 + AT_rich Low_complexity Low_complexity 1 23 0 7 1674 576 216 144 0 chr4 142857107 142857232 -12772888 + B1_Mur3 SINE Alu 1 143 -6 7 1674 195 42 0 0 chr4 142857250 142857274 -12772846 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1674 198 0 0 0 chr4 142857808 142857830 -12772290 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1674 1215 41 7 0 chr4 142859631 142859776 -12770344 + B1_Mm SINE Alu 2 147 0 7 1674 322 288 0 0 chr4 142860182 142860262 -12769858 + ID2 SINE ID 2 81 -2 7 1674 225 245 20 0 chr4 142860262 142860311 -12769809 + GA-rich Low_complexity Low_complexity 1 50 0 7 1674 950 62 131 0 chr4 142861124 142861254 -12768866 - B1_Mus2 SINE Alu 0 147 1 7 1674 522 0 0 0 chr4 142861340 142861398 -12768722 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1674 513 0 0 0 chr4 142861398 142861454 -12768666 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1674 878 179 0 25 chr4 142861455 142861615 -12768505 - B3 SINE B2 -60 156 1 7 1674 233 239 13 53 chr4 142861848 142861923 -12768197 + ID4 SINE ID 9 80 -3 7 1674 731 214 7 20 chr4 142862017 142862165 -12767955 - B1_Mus2 SINE Alu 0 147 2 7 1674 433 275 105 26 chr4 142862205 142862358 -12767762 - L1MB3 LINE L1 -338 5845 5681 7 1674 400 231 87 101 chr4 142862364 142862513 -12767607 - B1F1 SINE Alu 0 149 3 7 1674 807 191 209 22 chr4 142862555 142862737 -12767383 + B3 SINE B2 1 216 0 7 1674 297 162 167 48 chr4 142862825 142862909 -12767211 + B1F1 SINE Alu 14 107 -42 7 1674 323 185 110 110 chr4 142862834 142862925 -12767195 + ID_B1 SINE B4 102 192 -32 7 1674 419 267 60 94 chr4 142863062 142863211 -12766909 - RSINE1 SINE B4 -8 157 14 7 1674 267 176 159 14 chr4 142863311 142863380 -12766740 - B3A SINE B2 -119 79 1 7 1674 240 184 0 0 chr4 142863568 142863617 -12766503 + CT-rich Low_complexity Low_complexity 3 51 0 7 1674 1125 82 0 7 chr4 142863617 142863764 -12766356 - B1_Mus2 SINE Alu 0 147 2 7 1674 212 93 0 44 chr4 142864060 142864075 -12766045 + (CAAA)n Simple_repeat Simple_repeat 2 16 0 7 1674 1153 56 14 0 chr4 142864075 142864217 -12765903 + B1_Mm SINE Alu 2 145 -2 7 1674 212 93 0 44 chr4 142864217 142864246 -12765874 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1674 189 0 0 0 chr4 142864339 142864360 -12765760 + (TA)n Simple_repeat Simple_repeat 2 22 0 7 1674 345 143 0 18 chr4 142864375 142864432 -12765688 - B2_Mm2 SINE B2 -93 102 47 7 1674 1170 89 77 0 chr4 142864464 142864632 -12765488 - B2_Mm2 SINE B2 -14 181 1 7 1674 959 236 47 14 chr4 142864797 142865012 -12765108 - B4 SINE B4 -69 223 2 7 1674 361 279 121 60 chr4 142865045 142865194 -12764926 - MER21B LTR ERV1 -400 463 306 8 1674 438 145 14 0 chr4 142865204 142865273 -12764847 - B1_Mur2 SINE Alu -1 148 79 8 1674 1195 68 0 0 chr4 142865429 142865576 -12764544 - B1_Mus2 SINE Alu 0 147 1 8 1674 1095 125 53 16 chr4 142865585 142865772 -12764348 - B2_Mm2 SINE B2 0 195 2 8 1674 324 0 0 0 chr4 142866622 142866658 -12763462 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8 1674 558 266 49 21 chr4 142866662 142866804 -12763316 + RSINE1 SINE B4 4 149 -16 8 1674 713 199 0 35 chr4 142866965 142867106 -12763014 - B1_Mur2 SINE Alu -6 143 8 8 1674 192 125 0 0 chr4 142867212 142867244 -12762876 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1674 631 284 70 90 chr4 142867249 142867287 -12762833 - B4 SINE B4 -12 280 245 8 1674 1750 156 127 23 chr4 142867287 142867641 -12762479 + ORR1B1 LTR MaLR 4 394 0 8 1674 631 284 70 90 chr4 142867641 142867846 -12762274 - B4 SINE B4 -48 244 42 8 1674 303 315 19 95 chr4 142867927 142868119 -12762001 + MLT1A LTR MaLR 9 195 -195 8 1675 261 75 0 0 chr4 142868805 142868845 -12761275 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1675 343 157 113 135 chr4 142869151 142869284 -12760836 + HAL1-3A_ME LINE L1 1976 2105 -753 8 1675 526 240 227 6 chr4 142870190 142870362 -12759758 + B3 SINE B2 1 210 -6 8 1675 687 196 57 14 chr4 142870387 142870527 -12759593 + B1_Mus1 SINE Alu 3 148 0 8 1675 555 283 48 74 chr4 142870534 142870763 -12759357 + B4A SINE B4 70 292 0 8 1675 249 196 0 0 chr4 142870832 142870883 -12759237 + T-rich Low_complexity Low_complexity 1 51 0 8 1675 950 75 0 169 chr4 142870883 142871060 -12759060 - B1_Mm SINE Alu 0 147 1 8 1675 241 311 107 13 chr4 142871442 142871517 -12758603 + ID SINE ID 1 82 -142 8 1675 395 250 18 46 chr4 142871577 142871686 -12758434 + PB1D10 SINE Alu 3 108 -9 8 1675 423 0 0 0 chr4 142872077 142872124 -12757996 + (TAA)n Simple_repeat Simple_repeat 3 49 0 8 1675 475 160 40 69 chr4 142872716 142872817 -12757303 - RSINE1 SINE B4 -44 121 24 8 1675 490 208 54 54 chr4 142872829 142872941 -12757179 - B1_Mus1 SINE Alu -32 116 5 8 1675 1110 118 0 0 chr4 142873037 142873207 -12756913 + (GAA)n Simple_repeat Simple_repeat 2 171 0 8 1675 1215 81 0 0 chr4 142873211 142873371 -12756749 + B2_Mm2 SINE B2 4 163 -32 8 1675 397 202 65 75 chr4 142873658 142873765 -12756355 + PB1D10 SINE Alu 11 116 -1 8 1675 493 209 9 19 chr4 142873859 142873966 -12756154 + PB1D10 SINE Alu 11 116 -1 8 1675 318 137 0 0 chr4 142874022 142874073 -12756047 + L1MA4 LINE L1 5852 5902 -398 8 1675 216 67 0 0 chr4 142874111 142874141 -12755979 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1675 398 311 74 0 chr4 142874390 142874525 -12755595 + RSINE1 SINE B4 3 147 -18 8 1675 346 222 311 27 chr4 142874601 142874773 -12755347 + B4A SINE B4 7 231 -61 8 1675 539 224 161 29 chr4 142874773 142874944 -12755176 + B3A SINE B2 1 189 -27 8 1675 642 276 83 126 chr4 142875537 142875598 -12754522 - B4 SINE B4 -3 289 250 8 1675 1188 61 0 0 chr4 142875598 142875745 -12754375 - B1_Mus1 SINE Alu 0 148 2 8 1675 642 276 83 126 chr4 142875745 142875985 -12754135 - B4 SINE B4 -43 249 1 8 1675 268 278 51 85 chr4 142875992 142876110 -12754010 - PB1D10 SINE Alu -1 116 3 8 1675 261 0 0 0 chr4 142876658 142876687 -12753433 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1675 261 323 23 15 chr4 142876703 142876718 -12753402 + polypurine Low_complexity Low_complexity 5 19 0 8 1675 278 224 30 0 chr4 142876718 142876785 -12753335 + ID4_ SINE ID 2 70 -13 8 1675 261 323 23 15 chr4 142876785 142876901 -12753219 + GA-rich Low_complexity Low_complexity 20 137 0 8 1675 264 262 58 24 chr4 142876901 142876985 -12753135 + PB1D10 SINE Alu 11 101 -16 8 1675 243 189 0 0 chr4 142876987 142877040 -12753080 + GA-rich Low_complexity Low_complexity 2 54 0 8 1675 276 30 0 0 chr4 142877161 142877194 -12752926 + (TCTCC)n Simple_repeat Simple_repeat 2 34 0 8 1675 1172 61 0 7 chr4 142877267 142877415 -12752705 + B1_Mus2 SINE Alu 1 147 0 8 1675 228 280 118 59 chr4 142877447 142877599 -12752521 - MIRb SINE MIR -81 187 27 8 1675 1387 52 35 0 chr4 142877601 142877775 -12752345 - B2_Mm2 SINE B2 -12 183 4 8 1675 219 170 0 0 chr4 142877831 142877878 -12752242 + C-rich Low_complexity Low_complexity 1 47 0 8 1675 923 254 13 98 chr4 142877924 142878239 -12751881 - B4A SINE B4 -3 289 2 8 1675 253 234 49 49 chr4 142879149 142879230 -12750890 - ID4 SINE ID -1 82 2 8 1675 803 236 193 37 chr4 142879543 142879715 -12750405 + MTEa LTR MaLR 16 196 -183 8 1675 288 0 0 0 chr4 142879715 142879747 -12750373 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1675 803 236 193 37 chr4 142879747 142879843 -12750277 + MTEa LTR MaLR 197 325 -54 8 1675 293 172 94 0 chr4 142880005 142880069 -12750051 - B3A SINE B2 -128 70 1 8 1675 272 247 0 80 chr4 142880226 142880314 -12749806 + PB1 SINE Alu 47 127 0 8 1675 750 305 77 35 chr4 142880403 142880804 -12749316 + L1M4 LINE L1 4792 5209 -937 8 1675 198 128 0 0 chr4 142880849 142880888 -12749232 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 1675 1243 41 0 0 chr4 142880897 142881042 -12749078 - B1_Mm SINE Alu -2 145 1 8 1675 703 195 8 38 chr4 142881048 142881181 -12748939 - B1_Mur1 SINE Alu 0 149 21 8 1675 977 99 0 14 chr4 142881309 142881452 -12748668 - B2_Mm2 SINE B2 -7 188 48 8 1675 502 94 11 23 chr4 142881816 142881903 -12748217 + (GGGAGA)n Simple_repeat Simple_repeat 4 89 0 8 1675 724 287 10 26 chr4 142881905 142882098 -12748022 + ID_B1 SINE B4 32 221 -3 8 1675 198 0 0 0 chr4 142882098 142882120 -12748000 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1675 567 244 14 70 chr4 142882135 142882285 -12747835 + B3A SINE B2 1 138 -60 8 1675 234 0 0 0 chr4 142882285 142882311 -12747809 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1675 403 300 14 144 chr4 142882311 142882382 -12747738 + B2_Mm2 SINE B2 130 192 -3 8 1675 1128 90 0 0 chr4 142882383 142882528 -12747592 + B1_Mm SINE Alu 2 146 -1 8 1675 285 330 49 70 chr4 142882570 142882783 -12747337 - L1MA5 LINE L1 -32 6268 6060 8 1675 1711 26 0 0 chr4 142882783 142882975 -12747145 + B2_Mm1a SINE B2 2 193 0 8 1675 233 329 50 72 chr4 142882975 142883032 -12747088 - L1MA5 LINE L1 -240 6060 6004 8 1675 897 223 0 6 chr4 142883032 142883199 -12746921 - ORR1D1 LTR MaLR 0 374 209 8 1675 310 289 70 0 chr4 142883304 142883418 -12746702 + MIRb SINE MIR 113 234 -34 8 1675 311 172 17 0 chr4 142883604 142883662 -12746458 + B4 SINE B4 1 59 -233 8 1675 543 134 151 56 chr4 142883663 142883782 -12746338 - ORR1D1 LTR MaLR -10 364 233 8 1675 539 303 34 11 chr4 142883782 142883959 -12746161 + B3A SINE B2 2 182 -16 8 1675 21 0 0 0 chr4 142883972 142883993 -12746127 + AT_rich Low_complexity Low_complexity 1 21 0 8 1675 1010 81 7 7 chr4 142883996 142884133 -12745987 + B1_Mus1 SINE Alu 1 137 -11 8 1675 219 245 0 20 chr4 142884463 142884513 -12745607 + L2a LINE L2 3378 3426 0 8 1675 1030 261 28 39 chr4 142885095 142885350 -12744770 - B4 SINE B4 0 292 41 8 1675 908 288 24 16 chr4 142885602 142885853 -12744267 + B4A SINE B4 1 253 -39 8 1675 288 0 0 0 chr4 142885854 142885886 -12744234 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1675 351 0 0 0 chr4 142887738 142887777 -12742343 + (TA)n Simple_repeat Simple_repeat 2 40 0 8 1675 708 243 48 19 chr4 142888222 142888432 -12741688 - ID_B1 SINE B4 -4 220 5 8 1675 216 0 0 0 chr4 142889217 142889241 -12740879 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1675 588 53 0 0 chr4 142889867 142889943 -12740177 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 8 1675 385 256 0 55 chr4 142890396 142890487 -12739633 + RSINE1 SINE B4 38 123 -42 8 1675 429 95 0 0 chr4 142890497 142890560 -12739560 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1675 389 317 26 58 chr4 142890751 142890905 -12739215 - RSINE1 SINE B4 -2 163 15 8 1675 1194 107 6 6 chr4 142891416 142891594 -12738526 + B2_Mm2 SINE B2 1 178 -17 8 1675 1221 69 0 0 chr4 142892920 142893065 -12737055 + B1_Mus2 SINE Alu 3 147 0 8 1675 1046 158 44 36 chr4 142893495 142893745 -12736375 + RMER10B LTR ERVL 14 265 -133 8 1675 375 23 0 0 chr4 142893745 142893789 -12736331 + (TCTCC)n Simple_repeat Simple_repeat 5 48 0 8 1675 323 301 59 40 chr4 142893796 142893948 -12736172 - HAL1-3A_ME LINE L1 -419 2439 2285 8 1675 259 271 8 17 chr4 142893956 142894076 -12736044 + CT-rich Low_complexity Low_complexity 5 123 0 8 1675 1075 143 5 81 chr4 142894080 142894301 -12735819 + RMER10B LTR ERVL 195 398 0 8 1675 622 263 19 57 chr4 142894301 142894506 -12735614 - MER2 DNA MER2_type -55 290 94 8 1675 791 218 14 0 chr4 142894511 142894653 -12735467 - B1_Mur1 SINE Alu -5 144 1 8 1675 398 264 30 82 chr4 142894694 142894784 -12735336 + MT2B LTR ERVL 63 151 -433 8 1675 791 144 62 35 chr4 142894784 142894928 -12735192 + B1_Mus1 SINE Alu 1 148 0 8 1675 207 236 0 0 chr4 142894928 142895000 -12735120 + A-rich Low_complexity Low_complexity 1 72 0 8 1675 238 222 36 24 chr4 142895161 142895244 -12734876 - L1MC4 LINE L1 -197 7845 7762 8 1675 415 283 101 111 chr4 142895268 142895467 -12734653 + ID_B1 SINE B4 28 224 0 8 1675 609 185 8 70 chr4 142895342 142895470 -12734650 + PB1 SINE Alu 8 127 0 8 1675 371 248 9 9 chr4 142895533 142895639 -12734481 - L1MC4 LINE L1 -449 7593 7488 8 1675 521 247 200 12 chr4 142895911 142896071 -12734049 - ID_B1 SINE B4 0 224 35 8 1675 617 0 0 14 chr4 142896279 142896353 -12733767 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1675 180 0 0 0 chr4 142896668 142896688 -12733432 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1675 246 250 129 50 chr4 142896688 142896789 -12733331 - PB1D10 SINE Alu 0 117 9 9 1675 1222 36 0 0 chr4 142897259 142897398 -12732722 - B1_Mm SINE Alu -5 142 4 9 1675 266 102 0 20 chr4 142897905 142897912 -12732208 + (GAAA)n Simple_repeat Simple_repeat 4 10 0 9 1675 1177 75 0 0 chr4 142897912 142898058 -12732062 + B1_Mus2 SINE Alu 2 147 0 9 1675 266 102 0 20 chr4 142898058 142898100 -12732020 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 9 1675 282 154 12 25 chr4 142898565 142898645 -12731475 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1675 1083 82 0 75 chr4 142899582 142899741 -12730379 - B1_Mus2 SINE Alu 0 147 1 9 1675 21 0 0 0 chr4 142899748 142899769 -12730351 + AT_rich Low_complexity Low_complexity 1 21 0 9 1675 671 268 7 13 chr4 142899798 142899949 -12730171 - RSINE1 SINE B4 -12 153 4 9 1675 2888 227 41 32 chr4 142900051 142900860 -12729260 + Lx5 LINE L1 6051 6817 -241 9 1675 1212 84 73 0 chr4 142900860 142901038 -12729082 - B2_Mm1t SINE B2 -2 191 1 9 1675 2463 247 34 125 chr4 142901038 142901307 -12728813 + Lx5 LINE L1 6818 7054 -4 9 1675 1111 170 43 14 chr4 142901331 142901540 -12728580 + B3 SINE B2 1 215 -1 9 1675 744 200 15 0 chr4 142901882 142902017 -12728103 + B3 SINE B2 2 138 -78 9 1675 791 224 48 48 chr4 142902032 142902061 -12728059 - B3A SINE B2 -6 192 166 9 1675 396 0 0 0 chr4 142902061 142902105 -12728015 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1675 791 224 48 48 chr4 142902105 142902263 -12727857 - B3A SINE B2 -33 165 5 9 1675 895 252 42 0 chr4 142902282 142902496 -12727624 - ID_B1 SINE B4 -1 223 1 9 1675 26 30 0 0 chr4 142902496 142902529 -12727591 + AT_rich Low_complexity Low_complexity 1 33 0 9 1675 1190 48 0 39 chr4 142902684 142902837 -12727283 - B1_Mus1 SINE Alu 0 148 2 9 1675 213 39 0 0 chr4 142902856 142902882 -12727238 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1675 306 73 0 0 chr4 142902999 142903040 -12727080 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1675 220 235 78 0 chr4 142903043 142903094 -12727026 - ID4 SINE ID -10 73 19 9 1675 210 271 13 103 chr4 142903094 142903119 -12727001 - B4 SINE B4 -216 74 6 9 1675 657 239 45 26 chr4 142903286 142903441 -12726679 - ID_B1 SINE B4 -7 217 60 9 1675 845 98 0 31 chr4 142903938 142904065 -12726055 - B1_Mm SINE Alu -10 137 15 9 1675 993 96 15 0 chr4 142904114 142904249 -12725871 + B1_Mus1 SINE Alu 3 139 -9 9 1675 282 87 0 0 chr4 142904253 142904299 -12725821 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 9 1675 643 314 29 24 chr4 142904617 142904826 -12725294 - MER20 DNA MER1_type 0 219 10 9 1675 431 330 101 101 chr4 142904823 142905208 -12724912 + LTR81A LTR ERV1? 63 447 -946 9 1675 941 284 22 47 chr4 142905279 142905375 -12724745 - MTE-int LTR MaLR -1241 339 252 9 1675 3514 20 5 5 chr4 142905375 142905771 -12724349 - MTA_Mm LTR MaLR 0 396 1 9 1675 941 291 29 49 chr4 142905771 142905983 -12724137 - MTE-int LTR MaLR -1329 251 1 9 1675 396 256 82 67 chr4 142905988 142906012 -12724108 - ORR1E LTR MaLR -8 371 351 9 1675 540 0 0 0 chr4 142906012 142906072 -12724048 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1675 396 256 82 67 chr4 142906072 142906181 -12723939 - ORR1E LTR MaLR -29 350 236 9 1675 951 183 56 61 chr4 142906184 142906382 -12723738 + B3 SINE B2 17 213 -3 9 1675 447 338 19 38 chr4 142906375 142906532 -12723588 - ORR1E LTR MaLR -205 154 1 9 1675 307 200 17 0 chr4 142906542 142906602 -12723518 - PB1D7 SINE Alu -57 63 3 9 1675 548 245 24 65 chr4 142906705 142906875 -12723245 - RSINE1 SINE B4 0 165 3 9 1675 195 69 0 0 chr4 142906891 142906920 -12723200 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1675 322 279 0 0 chr4 142908004 142908072 -12722048 - ID4_ SINE ID -10 73 6 9 1675 247 275 34 91 chr4 142908153 142908241 -12721879 - ID4_ SINE ID 0 83 1 9 1675 451 258 55 55 chr4 142908279 142908406 -12721714 - PB1D9 SINE Alu -20 129 3 9 1675 311 269 65 28 chr4 142908470 142908577 -12721543 + MER113 DNA MER1_type 346 456 -65 9 1675 210 37 0 0 chr4 142908629 142908656 -12721464 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 9 1675 395 222 190 4 chr4 142908920 142909044 -12721076 + MTEa LTR MaLR 1 143 -236 9 1675 1050 215 9 14 chr4 142909135 142909352 -12720768 + MTEa LTR MaLR 164 379 0 9 1675 834 178 7 14 chr4 142909390 142909538 -12720582 - B1_Mur3 SINE Alu -1 148 2 9 1675 230 344 32 21 chr4 142909965 142910060 -12720060 - MamGypLTR1b LTR Gypsy -560 222 127 9 1675 673 132 69 15 chr4 142910109 142910240 -12719880 - B1_Mur1 SINE Alu -7 142 5 9 1675 248 345 35 26 chr4 142910454 142910567 -12719553 + MIRm SINE MIR 41 154 -122 9 1675 1880 204 39 10 chr4 142910578 142910985 -12719135 - MTD LTR MaLR 0 419 1 9 1675 1308 34 0 0 chr4 142911356 142911504 -12718616 - B1_Mus1 SINE Alu 0 148 1 9 1675 390 295 53 0 chr4 142911842 142911937 -12718183 - B1F1 SINE Alu -1 148 49 9 1675 443 305 126 39 chr4 142911937 142912240 -12717880 - RLTR41 LTR ERV1 -62 470 167 9 1675 514 237 16 33 chr4 142912440 142912562 -12717558 - PB1D7 SINE Alu 0 120 1 9 1675 275 370 116 5 chr4 142913202 142913392 -12716728 + MIRb SINE MIR 23 233 -35 9 1675 699 280 86 10 chr4 142913494 142913703 -12716417 - B4 SINE B4 -64 228 4 9 1675 414 145 0 0 chr4 142913996 142914058 -12716062 - URR1B DNA MER1_type 0 225 164 9 1675 4049 137 94 75 chr4 142914058 142914884 -12715236 + RMER21B LTR ERV1 1 842 0 9 1675 1065 178 0 0 chr4 142914884 142915053 -12715067 - URR1B DNA MER1_type -57 168 1 9 1675 198 0 0 0 chr4 142915537 142915559 -12714561 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 9 1675 533 209 240 7 chr4 142916216 142916370 -12713750 - MTEb LTR MaLR -3 376 187 9 1675 361 284 0 0 chr4 142916375 142916456 -12713664 + ID_B1 SINE B4 137 217 -7 9 1675 1141 65 0 0 chr4 142916465 142916604 -12713516 + B1_Mus2 SINE Alu 1 139 -8 9 1675 189 0 0 0 chr4 142916604 142916625 -12713495 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1675 756 194 39 6 chr4 142916639 142916795 -12713325 - MTE2b LTR MaLR -5 374 214 9 1675 255 161 0 0 chr4 142916808 142916864 -12713256 + GA-rich Low_complexity Low_complexity 1 56 0 9 1675 259 234 0 0 chr4 142916897 142916944 -12713176 - MTE2b LTR MaLR -291 88 42 9 1675 228 35 0 0 chr4 142917112 142917141 -12712979 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 9 1675 263 279 11 75 chr4 142917708 142917801 -12712319 - PB1D10 SINE Alu -2 115 29 9 1675 294 289 13 0 chr4 142917789 142917865 -12712255 - B3A SINE B2 -121 77 1 9 1675 1289 103 27 0 chr4 142918501 142918685 -12711435 + B2_Mm2 SINE B2 1 189 -6 9 1675 1259 41 7 0 chr4 142918745 142918891 -12711229 - B1_Mus2 SINE Alu 0 147 1 9 1675 981 185 32 87 chr4 142918923 142919142 -12710978 + B3 SINE B2 2 208 -8 9 1675 373 268 0 0 chr4 142919204 142919286 -12710834 - RSINE1 SINE B4 -2 163 82 9 1675 1204 62 0 0 chr4 142919367 142919512 -12710608 - B1_Mus2 SINE Alu -2 145 1 9 1675 212 224 20 0 chr4 142919541 142919590 -12710530 - PB1D10 SINE Alu -4 113 64 9 1675 323 290 10 31 chr4 142919830 142919926 -12710194 + C-rich Low_complexity Low_complexity 1 94 0 9 1675 348 289 26 80 chr4 142919944 142920057 -12710063 - PB1D10 SINE Alu -5 112 6 9 1675 780 236 14 0 chr4 142919972 142920120 -12710000 - ID_B1 SINE B4 -52 172 23 9 1675 494 276 38 38 chr4 142920121 142920154 -12709966 - B1F SINE Alu -5 144 110 9 1675 213 121 0 0 chr4 142920154 142920187 -12709933 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1675 494 276 38 38 chr4 142920187 142920285 -12709835 - B1F SINE Alu -40 109 13 9 1675 300 333 10 0 chr4 142920304 142920400 -12709720 + CT-rich Low_complexity Low_complexity 2 98 0 9 1675 397 275 18 9 chr4 142920400 142920510 -12709610 - PB1 SINE Alu 0 127 17 9 1675 310 337 85 12 chr4 142920977 142921142 -12708978 - L1MCa LINE L1 -5190 1318 1142 9 1675 954 122 0 0 chr4 142921146 142921294 -12708826 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 9 1675 1004 75 60 0 chr4 142921294 142921427 -12708693 - B1_Mus1 SINE Alu -6 142 2 9 1675 243 320 27 0 chr4 142921467 142921542 -12708578 + PB1D10 SINE Alu 13 89 -28 9 1675 243 282 163 39 chr4 142921535 142921664 -12708456 - MTD LTR MaLR -7 372 228 9 1675 431 243 63 49 chr4 142922001 142922144 -12707976 + RLTR23 LTR ERV1 286 430 0 9 1675 565 277 89 40 chr4 142922144 142922372 -12707748 - MTD LTR MaLR -146 233 6 9 1675 1044 78 7 0 chr4 142922727 142922868 -12707252 - B2_Mm1t SINE B2 -3 190 49 9 1675 472 123 0 27 chr4 142922847 142922922 -12707198 - 4.5SRNA scRNA scRNA -21 73 1 9 1675 1270 136 9 53 chr4 142922922 142923038 -12707082 - URR1B DNA MER1_type -8 217 108 9 1675 1463 57 0 30 chr4 142923038 142923236 -12706884 - B2_Mm2 SINE B2 -3 192 1 9 1675 1270 136 9 53 chr4 142923236 142923345 -12706775 - URR1B DNA MER1_type -118 107 2 9 1675 255 314 98 49 chr4 142923501 142923665 -12706455 + MIRb SINE MIR 17 189 -79 9 1675 348 77 0 0 chr4 142924445 142924497 -12705623 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1675 612 233 140 14 chr4 142924539 142924811 -12705309 - MTE2b LTR MaLR -10 369 64 9 1675 553 243 101 14 chr4 142925145 142925283 -12704837 + B3A SINE B2 20 169 -29 9 1675 306 0 0 0 chr4 142925512 142925546 -12704574 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1675 242 305 30 50 chr4 142925839 142925939 -12704181 + MLT1A1 LTR MaLR 307 404 -4 9 1675 242 326 33 44 chr4 142926294 142926384 -12703736 - MER21B LTR ERV1 -223 640 552 9 1675 528 183 11 0 chr4 142926550 142926643 -12703477 + B3 SINE B2 123 216 0 9 1675 311 318 8 31 chr4 142926723 142926853 -12703267 + MER63D DNA AcHobo 820 946 -115 9 1675 886 164 7 7 chr4 142927433 142927580 -12702540 + B1_Mus1 SINE Alu 2 148 0 9 1675 525 300 60 7 chr4 142927612 142927763 -12702357 - RSINE1 SINE B4 0 165 7 9 1675 23 0 0 0 chr4 142927769 142927792 -12702328 + AT_rich Low_complexity Low_complexity 1 23 0 1 1675 552 229 150 0 chr4 142927806 142927946 -12702174 - RSINE1 SINE B4 -1 164 4 1 1675 229 291 0 55 chr4 142927980 142928071 -12702049 - B4A SINE B4 -136 156 71 1 1675 663 184 0 9 chr4 142928066 142928181 -12701939 + B1_Mur2 SINE Alu 34 147 -2 1 1675 317 250 83 0 chr4 142929016 142929088 -12701032 - B3A SINE B2 -108 90 13 1 1675 207 88 0 0 chr4 142929259 142929293 -12700827 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1675 664 159 118 8 chr4 142929293 142929420 -12700700 - B1_Mur4 SINE Alu -9 141 1 1 1675 1201 159 40 5 chr4 142929445 142929647 -12700473 - B3 SINE B2 0 216 8 1 1675 565 218 98 39 chr4 142930091 142930244 -12699876 + RSINE1 SINE B4 3 164 -1 1 1675 25 31 0 0 chr4 142930252 142930284 -12699836 + AT_rich Low_complexity Low_complexity 1 32 0 1 1675 1026 274 56 4 chr4 142930291 142930522 -12699598 + 7SK RNA RNA 2 244 -87 1 1675 779 203 0 20 chr4 142930537 142930688 -12699432 + B1_Mur2 SINE Alu 1 148 -1 1 1675 237 182 0 0 chr4 142930740 142930795 -12699325 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1675 1173 261 43 4 chr4 142930795 142931076 -12699044 - B4A SINE B4 0 292 1 1 1675 182 376 12 0 chr4 142931250 142931335 -12698785 - L2b LINE L2 -1 3374 3289 1 1675 26 0 0 0 chr4 142931338 142931364 -12698756 + AT_rich Low_complexity Low_complexity 1 26 0 1 1675 499 257 177 0 chr4 142932573 142932748 -12697372 - B3 SINE B2 -6 210 5 1 1675 238 236 82 14 chr4 142932777 142932850 -12697270 + L2c LINE L2 3270 3347 -40 1 1675 183 80 0 0 chr4 142933056 142933081 -12697039 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1675 1069 115 78 33 chr4 142933224 142933404 -12696716 + B2_Mm1a SINE B2 3 190 -3 1 1675 978 289 116 35 chr4 142933506 142933997 -12696123 + MT2A LTR ERVL 3 533 0 1 1675 776 271 141 42 chr4 142934430 142934885 -12695235 - MLT1F2 LTR MaLR 0 560 1 1 1675 204 278 90 70 chr4 142934886 142935087 -12695033 - L2 LINE L2 -556 2863 2659 1 1675 459 52 0 0 chr4 142935448 142935506 -12694614 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1675 1263 91 34 0 chr4 142935620 142935796 -12694324 + B2_Mm2 SINE B2 2 183 -12 1 1675 1484 48 11 11 chr4 142936334 142936523 -12693597 - B2_Mm2 SINE B2 -6 189 1 1 1675 1341 93 0 94 chr4 142936529 142936560 -12693560 - B2_Mm2 SINE B2 -2 193 165 1 1675 1182 224 5 0 chr4 142936560 142936774 -12693346 + B3 SINE B2 2 216 0 1 1675 1341 93 0 94 chr4 142936774 142936955 -12693165 - B2_Mm2 SINE B2 -31 164 1 1 1675 695 219 12 56 chr4 142937034 142937194 -12692926 - RSINE1 SINE B4 0 165 13 1 1675 188 315 63 63 chr4 142938115 142938210 -12691910 - MIR SINE MIR -66 142 48 1 1675 21 0 0 0 chr4 142939944 142939965 -12690155 + GC_rich Low_complexity Low_complexity 1 21 0 1 1675 187 279 73 37 chr4 142941480 142941562 -12688558 + L3 LINE CR1 1378 1462 -3027 1 1675 228 359 104 11 chr4 142942477 142942650 -12687470 + MIR3 SINE MIR 16 198 -70 1 1675 942 246 45 41 chr4 142942947 142943178 -12686942 + B4A SINE B4 1 232 -60 1 1675 634 238 113 5 chr4 142943178 142943372 -12686748 + B3 SINE B2 1 215 -1 1 1675 323 236 83 0 chr4 142943396 142943468 -12686652 + B4A SINE B4 213 290 -2 1 1675 241 175 262 37 chr4 142943581 142943688 -12686432 - L1MA5 LINE L1 -187 6113 5983 1 1675 248 280 22 101 chr4 142944460 142944599 -12685521 + MER53 DNA hAT 24 151 -42 1 1675 1330 63 52 0 chr4 142944662 142944836 -12685284 - B2_Mm2 SINE B2 -11 184 2 1 1675 592 217 9 0 chr4 142944895 142945001 -12685119 - RSINE1 SINE B4 -56 109 3 1 1675 500 256 0 17 chr4 142945008 142945127 -12684993 - PB1D10 SINE Alu 0 117 1 1 1675 2341 113 138 3 chr4 142945923 142946294 -12683826 - MTC LTR MaLR 0 421 1 1 1675 195 42 0 0 chr4 142946428 142946452 -12683668 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1 1675 601 167 9 105 chr4 142946460 142946574 -12683546 - B1_Mur1 SINE Alu -5 144 42 1 1675 265 178 45 61 chr4 142946515 142946581 -12683539 - RLTR25B LTR ERVK -530 498 434 1 1675 21 36 0 0 chr4 142947368 142947396 -12682724 + AT_rich Low_complexity Low_complexity 1 28 0 1 1675 242 217 12 35 chr4 142947477 142947563 -12682557 + A-rich Low_complexity Low_complexity 5 88 0 1 1675 917 223 25 10 chr4 142947568 142947767 -12682353 + B3 SINE B2 1 202 -14 1 1675 1236 49 0 0 chr4 142947838 142947981 -12682139 + B1_Mus1 SINE Alu 1 143 -5 1 1675 792 203 0 0 chr4 142948036 142948169 -12681951 + B1_Mm SINE Alu 3 135 -12 1 1675 189 0 0 0 chr4 142948169 142948190 -12681930 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1675 580 162 98 91 chr4 142948202 142948345 -12681775 + B1_Mur2 SINE Alu 5 148 -1 1 1675 309 240 118 68 chr4 142948352 142948382 -12681738 + L1MB3 LINE L1 5878 5905 -278 1 1675 2549 138 74 0 chr4 142948382 142948774 -12681346 + MTC LTR MaLR 1 421 0 1 1675 309 246 104 71 chr4 142948774 142948923 -12681197 + L1MB3 LINE L1 5906 6046 -137 1 1675 727 221 191 135 chr4 142949332 142949599 -12680521 - MTD LTR MaLR 0 419 138 1 1675 863 136 0 0 chr4 142949610 142949735 -12680385 - B2_Mm2 SINE B2 -70 125 1 1 1675 24 32 0 0 chr4 142949748 142949779 -12680341 + AT_rich Low_complexity Low_complexity 1 31 0 1 1675 611 287 21 0 chr4 142950455 142950598 -12679522 + RSINE1 SINE B4 3 148 -17 1 1675 383 279 155 21 chr4 142950809 142950996 -12679124 - B4A SINE B4 -13 279 68 1 1675 274 350 16 24 chr4 142950988 142951034 -12679086 - B4A SINE B4 -170 122 77 1 1675 333 0 0 0 chr4 142951034 142951071 -12679049 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1675 274 350 16 24 chr4 142951071 142951147 -12678973 - B4A SINE B4 -216 76 2 1 1675 365 238 24 0 chr4 142951163 142951247 -12678873 + PB1 SINE Alu 23 108 -19 1 1675 372 295 126 13 chr4 142952228 142952379 -12677741 + ID_B1 SINE B4 8 175 -49 1 1675 344 183 40 53 chr4 142952327 142952393 -12677727 + PB1D7 SINE Alu 43 111 -9 1 1675 357 24 0 0 chr4 142952393 142952435 -12677685 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1675 455 322 0 48 chr4 142952649 142952714 -12677406 - B4 SINE B4 0 292 233 1 1675 1688 214 93 5 chr4 142952714 142953099 -12677021 - MTD LTR MaLR 0 419 1 1 1675 455 322 0 48 chr4 142953099 142953157 -12676963 - B4 SINE B4 -60 232 175 1 1675 1575 48 0 0 chr4 142953187 142953373 -12676747 - B2_Mm1a SINE B2 -6 187 2 1 1675 250 194 0 152 chr4 142953376 142953455 -12676665 - B4 SINE B4 -199 93 27 1 1675 2479 83 9 0 chr4 142953478 142953802 -12676318 - ORR1A2 LTR MaLR 0 327 1 1 1675 443 18 18 0 chr4 142953815 142953871 -12676249 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1675 1166 77 6 35 chr4 142953917 142954091 -12676029 - B2_Mm2 SINE B2 -26 169 1 1 1675 1010 118 6 0 chr4 142954154 142954315 -12675805 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 1 1675 1169 43 0 48 chr4 142954318 142954465 -12675655 - B1_Mm SINE Alu -6 141 2 1 1675 2008 203 30 5 chr4 142954646 142955042 -12675078 + MTD LTR MaLR 2 407 -12 1 1675 895 222 86 20 chr4 142955051 142955249 -12674871 + B3 SINE B2 1 211 -5 1 1675 367 322 60 17 chr4 142955316 142955433 -12674687 - ID_B1 SINE B4 -1 223 102 1 1675 230 247 128 11 chr4 142955444 142955538 -12674582 + MER20 DNA MER1_type 54 158 -61 1 1675 1096 220 18 5 chr4 142955585 142955804 -12674316 + ID_B1 SINE B4 1 222 -2 1 1675 680 231 52 7 chr4 142955808 142955943 -12674177 + B3A SINE B2 1 141 -57 1 1675 291 191 0 0 chr4 142955978 142956041 -12674079 + (CAAT)n Simple_repeat Simple_repeat 4 66 0 1 1675 239 267 0 140 chr4 142956071 142956082 -12674038 + MT2B LTR ERVL 156 203 -398 1 1675 518 193 0 0 chr4 142956082 142956165 -12673955 + B1_Mur4 SINE Alu 1 83 -67 1 1675 4695 42 2 0 chr4 142957007 142957560 -12672560 - L1Md_F2 LINE L1 0 6582 6029 1 1675 1127 61 0 33 chr4 142957624 142957776 -12672344 + B1_Mus1 SINE Alu 2 148 0 1 1675 255 79 0 0 chr4 142957803 142957841 -12672279 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1675 1832 179 46 60 chr4 142957841 142958276 -12671844 + Lx4B LINE L1 6624 7052 -6 1 1675 718 207 0 65 chr4 142958296 142958435 -12671685 + B1_Mur3 SINE Alu 5 137 -12 1 1675 189 0 0 0 chr4 142958435 142958456 -12671664 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1675 718 207 0 65 chr4 142958456 142958471 -12671649 + B1_Mur3 SINE Alu 138 149 0 1 1675 448 243 171 34 chr4 142958484 142958659 -12671461 + B3 SINE B2 1 199 -17 1 1675 204 163 0 0 chr4 142958669 142958712 -12671408 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1675 768 189 72 7 chr4 142958820 142958959 -12671161 + B1_Mur1 SINE Alu 1 148 -1 1 1675 791 258 85 8 chr4 142960592 142960838 -12669282 + MLT1A0 LTR MaLR 66 330 -35 1 1675 242 281 0 14 chr4 142961260 142961279 -12668841 + ID SINE ID 69 87 -205 1 1675 274 312 78 0 chr4 142961279 142961356 -12668764 + B1_Mur3 SINE Alu 3 85 -64 1 1675 470 193 8 130 chr4 142961514 142961645 -12668475 + PB1D9 SINE Alu 6 120 0 1 1675 541 223 27 0 chr4 142961950 142962062 -12668058 + PB1D10 SINE Alu 2 116 -1 1 1675 811 236 15 49 chr4 142962068 142962273 -12667847 + B3A SINE B2 1 198 0 1 1675 580 289 176 23 chr4 142962492 142962878 -12667242 - MLT2B4 LTR ERVL 0 414 6 1 1675 1092 89 0 20 chr4 142963011 142963160 -12666960 - B1_Mus2 SINE Alu 0 147 2 1 1675 326 295 107 20 chr4 142963493 142963690 -12666430 - RMER15 LTR ERVL -15 560 347 1 1675 463 288 127 26 chr4 142964170 142964393 -12665727 + MLT2B3 LTR ERVL 1 245 -311 1 1675 398 127 0 0 chr4 142964393 142964448 -12665672 - ORR1A2 LTR MaLR 0 326 272 1 1675 189 0 0 0 chr4 142964448 142964469 -12665651 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1675 977 41 0 0 chr4 142964469 142964590 -12665530 - B1_Mm SINE Alu 0 147 27 1 1675 2114 91 3 3 chr4 142964590 142964876 -12665244 - ORR1A2 LTR MaLR -41 286 1 1 1675 321 301 5 64 chr4 142965042 142965230 -12664890 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1 1675 276 401 12 6 chr4 142965168 142965341 -12664779 + (TGGG)n Simple_repeat Simple_repeat 3 176 0 1 1675 3116 47 39 5 chr4 142965384 142965767 -12664353 - MTA_Mm LTR MaLR 0 396 1 1 1675 222 307 54 90 chr4 142966757 142966868 -12663252 + ID_B1 SINE B4 69 175 -49 1 1675 503 263 1 0 chr4 142966777 142966891 -12663229 + PB1D7 SINE Alu 7 120 0 1 1675 531 274 9 0 chr4 142966937 142967050 -12663070 + RSINE1 SINE B4 12 125 -40 1 1675 822 241 46 5 chr4 142967221 142967417 -12662703 + B3 SINE B2 3 206 -10 1 1675 1049 141 7 0 chr4 142967425 142967574 -12662546 - B1_Mur4 SINE Alu 0 150 1 1 1675 614 213 62 28 chr4 142967603 142967748 -12662372 + B1_Mur4 SINE Alu 1 150 0 1 1675 218 75 50 0 chr4 142967783 142967823 -12662297 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1675 195 258 89 111 chr4 142967973 142968108 -12662012 + L2b LINE L2 3113 3244 -131 1 1675 288 137 0 0 chr4 142968122 142968173 -12661947 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 1 1675 180 77 0 0 chr4 142968458 142968484 -12661636 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1 1675 413 328 42 48 chr4 142968510 142968699 -12661421 + MIR SINE MIR 5 192 -70 1 1675 470 272 104 0 chr4 142969042 142969167 -12660953 - ID_B1 SINE B4 -2 222 85 1 1675 231 36 0 0 chr4 142969190 142969218 -12660902 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1675 579 273 52 21 chr4 142970471 142970662 -12659458 + B3A SINE B2 2 198 0 1 1675 261 0 0 0 chr4 142970662 142970691 -12659429 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1675 695 220 13 26 chr4 142970858 142971012 -12659108 + RSINE1 SINE B4 3 154 -11 1 1675 381 117 0 0 chr4 142971013 142971073 -12659047 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1675 205 159 45 0 chr4 142971077 142971121 -12658999 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1 1675 248 258 151 43 chr4 142971132 142971225 -12658895 + PB1D10 SINE Alu 2 104 -13 1 1675 270 0 0 0 chr4 142971225 142971255 -12658865 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1675 401 238 9 47 chr4 142971282 142971388 -12658732 + ID_B1 SINE B4 102 203 -21 1 1675 1040 156 114 5 chr4 142971535 142971728 -12658392 + B3 SINE B2 2 215 -1 1 1675 284 288 14 0 chr4 142971903 142971976 -12658144 - ID4 SINE ID -3 80 7 1 1675 651 26 0 0 chr4 142971986 142972063 -12658057 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1 1675 423 0 0 0 chr4 142972063 142972110 -12658010 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1675 262 346 0 0 chr4 142972561 142972642 -12657478 - ID4 SINE ID -1 82 2 1 1675 368 225 70 0 chr4 142972775 142972846 -12657274 - B3 SINE B2 -136 80 5 1 1675 627 14 0 0 chr4 142972846 142972918 -12657202 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1 1675 365 241 12 12 chr4 142973072 142973152 -12656968 + ID2 SINE ID 1 80 -3 1 1675 380 302 123 0 chr4 142973416 142973522 -12656598 + ID_B1 SINE B4 24 142 -82 1 1675 600 283 49 25 chr4 142973667 142973830 -12656290 + B3 SINE B2 39 205 -11 1 1675 29 47 0 0 chr4 142973843 142973886 -12656234 + AT_rich Low_complexity Low_complexity 1 43 0 1 1675 592 178 149 0 chr4 142974033 142974140 -12655980 + B1_Mur1 SINE Alu 1 123 -26 1 1675 441 0 0 0 chr4 142974148 142974197 -12655923 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 1675 737 59 0 19 chr4 142974639 142974743 -12655377 + (TTTCC)n Simple_repeat Simple_repeat 5 106 0 1 1675 1679 123 7 48 chr4 142974777 142974883 -12655237 + RMER6A LTR ERVK 496 602 -154 1 1675 1187 78 0 0 chr4 142974883 142975025 -12655095 + B1_Mus1 SINE Alu 1 142 -6 1 1675 689 0 0 12 chr4 142975027 142975109 -12655011 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 1 1675 1679 123 7 48 chr4 142975109 142975271 -12654849 + RMER6A LTR ERVK 603 756 0 1 1675 261 268 139 40 chr4 142975288 142975389 -12654731 + PB1 SINE Alu 6 116 -11 1 1675 344 208 323 0 chr4 142975410 142975506 -12654614 - B3 SINE B2 -84 132 6 1 1675 21 0 0 0 chr4 142975993 142976014 -12654106 + AT_rich Low_complexity Low_complexity 1 21 0 1 1675 3521 29 0 12 chr4 142976014 142976434 -12653686 + L1Md_F2 LINE L1 6168 6582 0 1 1675 1250 112 17 6 chr4 142976449 142976628 -12653492 - B2_Mm2 SINE B2 -13 182 2 1 1675 323 44 22 0 chr4 142976960 142977005 -12653115 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1675 1075 145 96 20 chr4 142977044 142977241 -12652879 + B3 SINE B2 1 212 -4 1 1675 954 176 0 0 chr4 142977241 142977581 -12652539 + GA-rich Low_complexity Low_complexity 1 340 0 1 1675 474 240 175 8 chr4 142977591 142977717 -12652403 + B1_Mur1 SINE Alu 3 149 0 1 1675 643 254 40 58 chr4 142977741 142977967 -12652153 + ID_B1 SINE B4 1 222 -2 1 1675 222 174 0 0 chr4 142977971 142978017 -12652103 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1675 738 185 15 0 chr4 142978048 142978188 -12651932 + B1_Mur3 SINE Alu 1 147 -2 1 1675 768 222 0 0 chr4 142978202 142978382 -12651738 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1675 830 194 0 11 chr4 142978356 142978538 -12651582 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1675 549 277 85 30 chr4 142978586 142978787 -12651333 + B3 SINE B2 5 216 0 1 1675 439 188 124 38 chr4 142978822 142978927 -12651193 - PB1D9 SINE Alu -1 119 6 1 1675 396 262 0 23 chr4 142979081 142979196 -12650924 + B1_Mur2 SINE Alu 5 114 -6 1 1675 244 200 114 0 chr4 142979207 142979277 -12650843 + B3A SINE B2 1 78 -120 1 1675 420 265 4 0 chr4 142980060 142980321 -12649799 + GA-rich Low_complexity Low_complexity 1 262 0 1 1675 206 32 32 0 chr4 142980710 142980741 -12649379 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1675 677 236 89 0 chr4 142980745 142980902 -12649218 + B3 SINE B2 39 209 -7 1 1675 549 210 161 20 chr4 142980904 142981083 -12649037 - B3 SINE B2 -3 192 1 1 1675 637 150 0 10 chr4 142981084 142981185 -12648935 - B1_Mur2 SINE Alu -7 142 43 1 1675 424 213 93 0 chr4 142981386 142981494 -12648626 - B1_Mm SINE Alu -21 126 9 1 1675 620 212 0 6 chr4 142981791 142981948 -12648172 + GA-rich Low_complexity Low_complexity 3 158 0 1 1675 518 184 48 10 chr4 142981950 142982054 -12648066 + B1_Mur2 SINE Alu 42 149 0 1 1675 197 104 0 59 chr4 142982054 142982105 -12648015 + A-rich Low_complexity Low_complexity 1 48 0 1 1675 448 252 19 37 chr4 142982381 142982488 -12647632 + ID_B1 SINE B4 1 105 -119 1 1675 379 328 94 29 chr4 142982504 142982642 -12647478 + B1F SINE Alu 3 149 0 1 1675 322 242 141 52 chr4 142982799 142982934 -12647186 - ID_B1 SINE B4 0 224 78 1 1675 369 0 0 0 chr4 142983092 142983133 -12646987 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1675 267 230 120 54 chr4 142983135 142983227 -12646893 - B1_Mur2 SINE Alu -16 131 34 1 1675 244 120 40 0 chr4 142983256 142983306 -12646814 + CT-rich Low_complexity Low_complexity 1 52 0 1 1675 518 268 7 78 chr4 142983317 142983471 -12646649 - B1_Mur1 SINE Alu -5 144 2 1 1675 351 0 0 0 chr4 142983475 142983514 -12646606 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1675 349 286 10 48 chr4 142983546 142983649 -12646471 - B1_Mus2 SINE Alu -44 103 5 1 1675 215 333 15 15 chr4 142983589 142983656 -12646464 - B4A SINE B4 -142 150 84 1 1675 186 143 0 0 chr4 142983658 142983693 -12646427 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1675 1173 62 14 0 chr4 142983693 142983839 -12646281 - B1_Mus1 SINE Alu 0 148 1 1 1675 577 233 14 57 chr4 142983853 142983994 -12646126 - B1F2 SINE Alu -6 143 9 1 1675 277 265 53 93 chr4 142984025 142984175 -12645945 - B1_Mur1 SINE Alu -5 144 1 1 1675 228 220 163 11 chr4 142985044 142985136 -12644984 + URR1B DNA MER1_type 120 225 0 1 1675 369 296 72 22 chr4 142985407 142985545 -12644575 - B1_Mur3 SINE Alu -4 145 1 1 1675 728 169 71 29 chr4 142985597 142985737 -12644383 + B1_Mus2 SINE Alu 1 146 -1 1 1675 220 265 132 0 chr4 142985929 142985997 -12644123 - B1_Mus1 SINE Alu -66 82 6 1 1675 256 286 164 25 chr4 142987896 142988018 -12642102 - B1F2 SINE Alu -7 142 4 1 1675 235 357 29 0 chr4 142989150 142989220 -12640900 - ID_B1 SINE B4 -80 144 73 1 1675 715 238 162 0 chr4 142989291 142989476 -12640644 + B3 SINE B2 1 215 -1 1 1675 908 121 6 0 chr4 142990039 142990045 -12640075 + (TC)n Simple_repeat Simple_repeat 1 6 0 1 1675 990 26 0 0 chr4 142990045 142990162 -12639958 + (TCCCC)n Simple_repeat Simple_repeat 3 119 0 1 1675 908 121 6 0 chr4 142990162 142990312 -12639808 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1675 420 203 93 7 chr4 142990312 142990421 -12639699 - B1_Mm SINE Alu -5 142 1 1 1675 293 301 96 0 chr4 142990640 142990723 -12639397 - RSINE1 SINE B4 -16 149 59 1 1675 462 150 18 91 chr4 142990839 142990949 -12639171 - B1_Mur2 SINE Alu -44 105 4 1 1675 958 209 32 5 chr4 142991186 142991374 -12638746 - B3 SINE B2 -14 202 10 1 1675 234 0 0 0 chr4 142991436 142991462 -12638658 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1675 257 174 22 0 chr4 142991543 142991589 -12638531 + B3A SINE B2 11 57 -141 1 1675 608 228 103 22 chr4 142991712 142991783 -12638337 + B4 SINE B4 6 91 -201 1 1675 1008 48 0 0 chr4 142991783 142991909 -12638211 + B1_Mm SINE Alu 1 126 -21 1 1675 899 65 8 0 chr4 142993867 142993990 -12636130 + (TCCC)n Simple_repeat Simple_repeat 4 127 0 1 1675 183 42 0 0 chr4 142993990 142994013 -12636107 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1675 513 149 144 31 chr4 142994014 142994111 -12636009 - B1_Mus2 SINE Alu -13 134 27 1 1675 562 111 0 0 chr4 142994109 142994190 -12635930 - ORR1D1 LTR MaLR -293 81 1 1 1675 696 280 0 35 chr4 142995658 142995832 -12634288 - B3A SINE B2 -30 168 1 1 1675 237 345 26 78 chr4 142995856 142995867 -12634253 + MT2B2 LTR ERVL 155 182 -402 1 1675 398 294 20 0 chr4 142995867 142995969 -12634151 + PB1D10 SINE Alu 1 104 -13 1 1675 237 345 26 78 chr4 142995969 142996010 -12634110 + MT2B2 LTR ERVL 183 300 -284 1 1675 426 39 0 0 chr4 142996033 142996085 -12634035 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1675 792 211 50 64 chr4 142996204 142996422 -12633698 - Lx5 LINE L1 -2 7048 6834 1 1675 653 239 82 23 chr4 142996543 142996718 -12633402 + B3 SINE B2 2 178 -17 1 1675 483 238 111 158 chr4 142996894 142996934 -12633186 + B3A SINE B2 2 34 -164 1 1675 1625 47 0 0 chr4 142996934 142997125 -12632995 + B2_Mm1a SINE B2 1 191 -2 1 1675 483 238 111 158 chr4 142997125 142997213 -12632907 + B3A SINE B2 35 126 -72 1 1675 1485 63 0 25 chr4 142997213 142997409 -12632711 - B2_Mm2 SINE B2 -4 191 1 1 1675 483 238 111 158 chr4 142997409 142997469 -12632651 + B3A SINE B2 127 182 -16 1 1675 492 250 31 8 chr4 142997498 142997627 -12632493 + ID_B1 SINE B4 93 224 0 1 1675 479 220 66 29 chr4 142997809 142997923 -12632197 + B1F SINE Alu 9 127 -22 1 1675 333 0 0 0 chr4 142997923 142997960 -12632160 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1675 479 220 66 29 chr4 142997960 142997981 -12632139 + B1F SINE Alu 128 148 -1 1 1675 210 250 0 19 chr4 142997989 142998042 -12632078 + B1_Mur4 SINE Alu 53 104 -46 1 1675 373 164 48 48 chr4 142998405 142998488 -12631632 - RLTR19-int LTR ERVK -1818 4319 4237 1 1675 239 211 111 37 chr4 142998698 142998752 -12631368 - RSINE1 SINE B4 0 165 108 1 1675 668 243 0 28 chr4 142998756 142998900 -12631220 - B1F SINE Alu -9 140 1 1 1675 489 281 94 0 chr4 142998925 142999053 -12631067 - B1_Mur1 SINE Alu -9 140 1 1 1675 497 233 103 8 chr4 142999120 142999237 -12630883 - B1_Mur2 SINE Alu -21 128 1 1 1676 758 50 50 0 chr4 142999899 143000000 -12630120 - B2_Mm2 SINE B2 -14 181 76 1 1676 510 120 0 0 chr4 143000000 143000075 -12630045 - B2_Mm2 SINE B2 -120 75 1 1 1676 285 301 0 28 chr4 143000104 143000210 -12629910 + B1F2 SINE Alu 46 148 -1 2 1676 404 225 55 153 chr4 143000211 143000288 -12629832 + B1_Mur2 SINE Alu 3 70 -79 3 1676 1407 91 43 0 chr4 143000288 143000475 -12629645 - B2_Mm2 SINE B2 0 195 1 4 1676 404 225 55 153 chr4 143000475 143000560 -12629560 + B1_Mur2 SINE Alu 71 149 0 3 1676 342 287 49 10 chr4 143000765 143000878 -12629242 - B1F SINE Alu -3 117 1 5 1676 380 331 45 7 chr4 143000907 143001062 -12629058 - RSINE1 SINE B4 -3 162 2 6 1676 378 269 81 66 chr4 143001188 143001399 -12628721 - ID_B1 SINE B4 -9 215 2 7 1676 1398 167 286 3 chr4 143001751 143002093 -12628027 + RMER10A LTR ERVL 4 442 0 8 1676 548 209 29 7 chr4 143002230 143002370 -12627750 - B1_Mur2 SINE Alu -6 143 1 9 1676 201 147 0 0 chr4 143002469 143002503 -12627617 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1676 204 226 0 0 chr4 143002662 143002715 -12627405 + A-rich Low_complexity Low_complexity 1 53 0 1 1676 246 274 96 64 chr4 143003164 143003289 -12626831 - B1F2 SINE Alu 0 149 21 1 1676 212 59 0 29 chr4 143003340 143003375 -12626745 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1676 410 229 15 106 chr4 143003656 143003788 -12626332 - PB1D9 SINE Alu 0 120 1 1 1676 223 186 0 0 chr4 143003953 143003996 -12626124 + T-rich Low_complexity Low_complexity 1 43 0 1 1676 631 176 8 23 chr4 143003999 143004127 -12625993 - B1_Mur3 SINE Alu -5 144 19 1 1676 302 268 0 0 chr4 143004355 143004426 -12625694 + ID4_ SINE ID 2 72 -11 1 1676 910 202 66 0 chr4 143004467 143004665 -12625455 - B3 SINE B2 -5 211 1 1 1676 239 203 59 89 chr4 143004809 143004931 -12625189 + B1F SINE Alu 1 123 -26 1 1676 940 155 32 27 chr4 143004982 143005168 -12624952 + B2_Mm2 SINE B2 2 188 -7 2 1676 203 61 0 29 chr4 143005196 143005230 -12624890 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1676 653 202 154 35 chr4 143005575 143005744 -12624376 + B3 SINE B2 1 189 -27 2 1676 24 32 0 0 chr4 143005792 143005823 -12624297 + AT_rich Low_complexity Low_complexity 1 31 0 2 1676 730 162 313 18 chr4 143005823 143005986 -12624134 + B3 SINE B2 1 211 -5 2 1676 1156 189 142 8 chr4 143006238 143006499 -12623621 + ORR1C2 LTR MaLR 86 381 -3 2 1676 209 170 0 41 chr4 143009508 143009557 -12620563 + T-rich Low_complexity Low_complexity 2 48 0 2 1676 658 195 241 0 chr4 143009561 143009735 -12620385 - B3 SINE B2 0 216 1 2 1676 987 173 67 28 chr4 143010117 143010372 -12619748 + MT2A LTR ERVL 269 533 0 2 1676 302 236 97 0 chr4 143010682 143010754 -12619366 - PB1D10 SINE Alu -28 89 11 2 1676 293 277 84 0 chr4 143010754 143010765 -12619355 - ID_B1 SINE B4 -54 170 81 3 1676 369 137 68 14 chr4 143011038 143011112 -12619008 + B3 SINE B2 2 79 -137 3 1676 287 316 0 0 chr4 143011290 143011366 -12618754 - B1_Mus2 SINE Alu -66 81 6 3 1676 30 27 0 0 chr4 143011755 143011792 -12618328 + AT_rich Low_complexity Low_complexity 1 37 0 3 1676 430 242 20 0 chr4 143011928 143012027 -12618093 - Lx7 LINE L1 -377 7319 7219 3 1676 1466 213 67 34 chr4 143012116 143012552 -12617568 - Lx6 LINE L1 -149 7547 6840 3 1676 216 250 0 0 chr4 143012601 143012661 -12617459 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1676 881 135 0 96 chr4 143012673 143012861 -12617259 + RLTR21 LTR ERVK 1403 1572 0 3 1676 1305 69 0 0 chr4 143013697 143013870 -12616250 + (CCA)n Simple_repeat Simple_repeat 1 173 0 3 1676 266 196 36 0 chr4 143014268 143014324 -12615796 + B1_Mur4 SINE Alu 19 76 -74 3 1676 916 144 0 0 chr4 143014396 143014535 -12615585 - B1_Mus1 SINE Alu -9 139 1 4 1676 28 0 0 0 chr4 143014591 143014619 -12615501 + AT_rich Low_complexity Low_complexity 1 28 0 4 1676 1064 217 15 5 chr4 143014703 143014907 -12615213 - B3 SINE B2 -10 206 1 4 1676 7043 86 68 19 chr4 143015073 143016258 -12613862 + Lx LINE L1 5411 6654 0 4 1676 306 219 0 0 chr4 143016275 143016339 -12613781 + B1_Mur3 SINE Alu 5 68 -81 4 1676 205 77 0 71 chr4 143016659 143016701 -12613419 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1676 180 0 0 0 chr4 143017151 143017171 -12612949 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1676 307 237 0 0 chr4 143017203 143017262 -12612858 - B1F2 SINE Alu -90 59 1 4 1676 216 0 0 0 chr4 143017265 143017289 -12612831 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1676 265 250 95 36 chr4 143017768 143017905 -12612215 + RLTR23 LTR ERV1 286 430 0 4 1676 284 304 0 12 chr4 143018200 143018280 -12611840 - B4 SINE B4 -209 83 5 5 1676 809 124 28 49 chr4 143018340 143018484 -12611636 + B1_Mus1 SINE Alu 1 141 -7 5 1676 248 244 0 11 chr4 143018612 143018703 -12611417 + GA-rich Low_complexity Low_complexity 2 91 0 5 1676 234 0 0 0 chr4 143018783 143018809 -12611311 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1676 261 0 0 0 chr4 143018809 143018837 -12611283 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1676 254 246 0 0 chr4 143019206 143019267 -12610853 - PB1D9 SINE Alu -59 61 1 5 1676 5643 103 108 66 chr4 143019714 143020430 -12609690 - Lx LINE L1 -4 6650 5872 5 1676 1387 108 0 25 chr4 143020430 143020630 -12609490 - B2_Mm2 SINE B2 0 195 1 5 1676 5643 103 108 66 chr4 143020630 143020725 -12609395 - Lx LINE L1 -783 5871 5795 5 1676 1490 48 0 56 chr4 143020725 143020922 -12609198 - B2_Mm1a SINE B2 -6 187 2 5 1676 5643 110 61 40 chr4 143020922 143021418 -12608702 - Lx LINE L1 -860 5794 5287 5 1676 11004 123 43 5 chr4 143022086 143024261 -12605859 - L1VL4 LINE L1 -802 2757 499 5 1676 200 213 21 0 chr4 143024267 143024314 -12605806 + (TTGGGG)n Simple_repeat Simple_repeat 5 52 0 6 1676 364 276 37 52 chr4 143024796 143024930 -12605190 - B1_Mur2 SINE Alu 0 149 18 6 1676 2526 167 25 33 chr4 143025605 143026118 -12604002 + RLTR28 LTR ERVL 2 510 -14 6 1676 1157 62 21 0 chr4 143029238 143029382 -12600738 + B1_Mm SINE Alu 1 147 0 6 1676 578 51 13 0 chr4 143030243 143030321 -12599799 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 6 1676 233 374 25 37 chr4 143030334 143030345 -12599775 - ID_B1 SINE B4 -15 209 173 6 1676 519 263 17 0 chr4 143030345 143030463 -12599657 - B1_Mur4 SINE Alu -29 121 2 6 1676 233 374 25 37 chr4 143030463 143030495 -12599625 - ID_B1 SINE B4 -15 172 51 6 1676 12763 115 66 31 chr4 143030804 143032938 -12597182 + Lx3A LINE L1 3 2223 -3663 6 1676 326 22 43 0 chr4 143032938 143032984 -12597136 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 6 1676 12763 97 14 38 chr4 143032984 143033122 -12596998 + Lx3A LINE L1 2224 2352 -3534 6 1676 1160 58 0 0 chr4 143033122 143033261 -12596859 + B1_Mm SINE Alu 1 139 -8 6 1676 12763 97 14 38 chr4 143033261 143033542 -12596578 + Lx3A LINE L1 2353 2607 -3279 6 1676 692 123 0 9 chr4 143033542 143033657 -12596463 + (TA)n Simple_repeat Simple_repeat 1 114 0 7 1676 12763 97 14 38 chr4 143033657 143034246 -12595874 + Lx3A LINE L1 2608 3209 -2677 6 1676 8620 98 33 4 chr4 143034242 143035944 -12594176 + Lx3A LINE L1 4690 6452 -529 6 1676 5226 65 17 5 chr4 143035944 143036608 -12593512 + L1Md_F2 LINE L1 5899 6570 -12 7 1676 3650 124 4 11 chr4 143036610 143037156 -12592964 + Lx3A LINE L1 6436 6977 -4 6 1676 356 210 100 0 chr4 143037752 143037852 -12592268 - B1_Mur2 SINE Alu 0 149 40 7 1676 231 151 19 0 chr4 143037863 143037916 -12592204 + Lx5 LINE L1 6982 7035 -15 7 1676 344 245 0 9 chr4 143037937 143038044 -12592076 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1676 1070 134 29 6 chr4 143038178 143038351 -12591769 - B2_Mm2 SINE B2 -18 177 1 7 1676 493 196 14 10 chr4 143038354 143038475 -12591645 - B1_Mm SINE Alu 0 149 21 7 1676 279 0 0 0 chr4 143038610 143038641 -12591479 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1676 837 199 32 35 chr4 143038768 143038990 -12591130 - Lx3C LINE L1 -2 6974 6777 7 1676 929 28 5 74 chr4 143038990 143039180 -12590940 + (CCCCCT)n Simple_repeat Simple_repeat 2 178 0 7 1676 698 235 95 32 chr4 143039180 143039405 -12590715 - Lx3C LINE L1 -191 6867 6604 7 1676 3537 150 4 16 chr4 143039398 143040065 -12590055 + Lx3C LINE L1 5327 5979 -1079 8 1676 316 260 0 6 chr4 143040438 143040513 -12589607 + B1_Mur4 SINE Alu 1 72 -77 8 1676 237 278 18 53 chr4 143040499 143040613 -12589507 + RMER12 LTR ERVK 1085 1194 -128 8 1676 15117 111 14 11 chr4 143040679 143043336 -12586784 + L1_Mur1 LINE L1 2981 5282 -604 8 1676 681 188 14 21 chr4 143043356 143043497 -12586623 + RMER6B LTR ERVK 319 458 -3 8 1676 216 342 43 51 chr4 143044218 143044280 -12585840 + B1F SINE Alu 3 118 -31 8 1676 293 236 0 0 chr4 143044280 143044335 -12585785 + ID_B1 SINE B4 142 196 -28 8 1676 477 0 0 0 chr4 143044716 143044769 -12585351 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1676 615 27 0 0 chr4 143044769 143044841 -12585279 + (GA)n Simple_repeat Simple_repeat 2 74 0 8 1676 255 279 0 0 chr4 143045218 143045279 -12584841 - PB1D9 SINE Alu -59 61 1 8 1676 759 251 27 10 chr4 143046241 143046453 -12583667 - B3A SINE B2 0 216 2 9 1676 482 241 0 0 chr4 143046461 143046573 -12583547 - B1_Mur4 SINE Alu 0 150 39 9 1676 317 180 16 0 chr4 143046584 143046645 -12583475 - ORR1A3-int LTR MaLR -864 1099 1038 9 1676 702 44 0 0 chr4 143046645 143046735 -12583385 + (TC)n Simple_repeat Simple_repeat 1 90 0 9 1676 333 0 0 0 chr4 143046935 143046972 -12583148 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1676 21 36 0 0 chr4 143047186 143047214 -12582906 + AT_rich Low_complexity Low_complexity 1 28 0 9 1676 216 0 0 0 chr4 143047903 143047927 -12582193 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1676 1242 83 0 0 chr4 143048529 143048747 -12581373 + (TTTC)n Simple_repeat Simple_repeat 1 218 0 9 1676 1245 67 0 0 chr4 143050611 143050775 -12579345 + (TTC)n Simple_repeat Simple_repeat 1 164 0 9 1676 550 100 0 0 chr4 143050778 143050858 -12579262 - L1_Mus2 LINE L1 -1 6565 6486 9 1676 4356 64 2 4 chr4 143050858 143051646 -12578474 + L1_Mus1 LINE L1 5266 6048 -519 1 1676 1589 163 58 64 chr4 143051647 143052040 -12578080 - MTC-int LTR MaLR -866 392 2 1 1676 239 191 0 0 chr4 143052039 143052086 -12578034 - MTC LTR MaLR 0 421 375 1 1676 226 67 0 0 chr4 143052092 143052122 -12577998 + RLTR22_Mur LTR ERVK 391 420 -1428 1 1676 652 101 283 0 chr4 143052123 143052158 -12577962 + RLTR22_Mur LTR ERVK 1029 1065 -783 1 1676 576 0 0 0 chr4 143052158 143052222 -12577898 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1676 652 101 283 0 chr4 143052222 143052345 -12577775 + RLTR22_Mur LTR ERVK 1066 1231 -617 1 1676 1824 121 7 10 chr4 143052321 143052629 -12577491 + RLTR22_Mur LTR ERVK 1459 1765 -83 1 1676 282 170 0 19 chr4 143053641 143053695 -12576425 + RLTR22_Mur LTR ERVK 1758 1810 -38 1 1676 485 242 30 48 chr4 143054720 143054747 -12575373 + RLTR9A LTR ERVK 207 231 -137 1 1676 2877 52 6 0 chr4 143054747 143055091 -12575029 + ORR1A1 LTR MaLR 1 346 0 1 1676 485 242 30 48 chr4 143055091 143055228 -12574892 + RLTR9A LTR ERVK 232 368 0 1 1676 4642 168 47 18 chr4 143055228 143056200 -12573920 - L1_Mur3 LINE L1 -1922 3958 2958 1 1676 4180 162 44 25 chr4 143056212 143056372 -12573748 + ORR1A3-int LTR MaLR 883 1037 -926 1 1676 1628 42 0 0 chr4 143056372 143056563 -12573557 + B2_Mm1a SINE B2 2 192 -1 1 1676 4180 162 44 25 chr4 143056563 143057248 -12572872 + ORR1A3-int LTR MaLR 1038 1744 -219 1 1676 824 148 0 0 chr4 143057251 143057393 -12572727 + ORR1A3 LTR MaLR 185 326 0 1 1676 531 0 0 0 chr4 143057503 143057562 -12572558 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1676 393 351 20 20 chr4 143058676 143058871 -12571249 - B3 SINE B2 -14 202 8 1 1676 316 340 0 0 chr4 143058893 143059034 -12571086 - B1_Mur3 SINE Alu -5 144 4 1 1676 285 315 37 0 chr4 143059730 143059838 -12570282 + ID_B1 SINE B4 113 224 0 1 1676 369 318 38 0 chr4 143060384 143060516 -12569604 - B1F SINE Alu -11 138 2 1 1676 21 0 0 0 chr4 143060660 143060681 -12569439 + AT_rich Low_complexity Low_complexity 1 21 0 1 1676 2737 96 18 37 chr4 143060685 143061119 -12569001 - MT2_Mm LTR ERVL 0 475 50 1 1676 12563 63 20 9 chr4 143061119 143062908 -12567212 + RLTR22_Mus LTR ERVK 1 1808 0 1 1676 437 18 0 0 chr4 143062908 143062963 -12567157 - MT2_Mm LTR ERVL -420 55 1 1 1676 903 157 139 0 chr4 143062963 143063135 -12566985 - MERVL-int LTR ERVL 0 5485 5290 1 1676 24 0 0 0 chr4 143063135 143063159 -12566961 + AT_rich Low_complexity Low_complexity 1 24 0 1 1676 4104 64 0 0 chr4 143063159 143063661 -12566459 - L1_Mus1 LINE L1 -1 6566 6065 1 1676 1853 70 66 7 chr4 143063666 143063967 -12566153 + MTA_Mm-int LTR MaLR 780 1098 0 1 1676 2655 57 32 8 chr4 143063967 143064342 -12565778 + MTA_Mm LTR MaLR 1 384 -12 1 1676 2130 64 0 0 chr4 143064342 143064607 -12565513 - L1_Mus1 LINE L1 -553 6014 5750 1 1676 3802 14 121 0 chr4 143064607 143065047 -12565073 - MT2_Mm LTR ERVL 0 493 1 1 1676 225 312 23 46 chr4 143065047 143065060 -12565060 - L1M4 LINE L1 -393 5781 5771 1 1676 362 167 46 35 chr4 143065085 143065172 -12564948 - ORR1A3-int LTR MaLR -1323 640 553 1 1676 48412 15 6 0 chr4 143065172 143070499 -12559621 - MERVL-int LTR ERVL -125 5360 1 1 1676 4542 12 0 0 chr4 143070499 143070992 -12559128 - MT2_Mm LTR ERVL 0 493 1 1 1676 5868 84 17 13 chr4 143070993 143071816 -12558304 - L1_Mm LINE L1 -130 5753 4928 1 1676 13866 111 13 1 chr4 143071816 143073715 -12556405 - MERVL-int LTR ERVL -181 5304 3382 1 1676 956 158 58 0 chr4 143073925 143074096 -12556024 - B2_Mm2 SINE B2 -12 183 3 1 1676 22 0 0 0 chr4 143074615 143074637 -12555483 + AT_rich Low_complexity Low_complexity 1 22 0 1 1676 243 274 0 16 chr4 143076165 143076228 -12553892 + B4A SINE B4 82 143 -149 1 1676 1205 189 13 0 chr4 143076388 143076615 -12553505 + RMER19B LTR ERVK 1 230 -672 1 1676 515 285 2 4 chr4 143076656 143076804 -12553316 - B1_Mus1 SINE Alu -4 146 1 1 1676 342 274 41 75 chr4 143076804 143076847 -12553273 - MT2B LTR ERVL -447 154 117 1 1676 1141 256 92 0 chr4 143077017 143077365 -12552755 - RLTR11A2 LTR ERVK -2 525 146 1 1676 258 47 23 0 chr4 143077390 143077433 -12552687 - B1_Mus2 SINE Alu 0 147 104 1 1676 1121 179 62 40 chr4 143077439 143077712 -12552408 + RLTR46 LTR ERVK 42 320 0 1 1676 474 219 39 132 chr4 143077712 143077917 -12552203 + IAPEY3-int LTR ERVK 1 186 -7494 1 1676 8185 237 47 2 chr4 143077913 143079762 -12550358 + IAPEY3-int LTR ERVK 535 2465 -5215 1 1676 8669 209 15 9 chr4 143079759 143081679 -12548441 + IAPEY3-int LTR ERVK 3847 5810 -1771 1 1676 2069 90 0 0 chr4 143081670 143081938 -12548182 + IAPEY3-int LTR ERVK 6651 6918 -663 1 1676 842 95 0 0 chr4 143081943 143082059 -12548061 + IAPEY3-int LTR ERVK 7466 7581 0 1 1676 1146 176 62 40 chr4 143082068 143082341 -12547779 + RLTR46 LTR ERVK 42 320 0 1 1676 750 89 0 0 chr4 143082341 143082453 -12547667 - B1_Mus1 SINE Alu -35 113 2 1 1676 582 224 97 15 chr4 143082453 143082606 -12547514 - RLTR11A2 LTR ERVK -358 169 1 1 1676 244 229 0 0 chr4 143082944 143083005 -12547115 + A-rich Low_complexity Low_complexity 1 61 0 1 1676 241 232 118 118 chr4 143083173 143083238 -12546882 - B1_Mur4 SINE Alu -1 149 80 1 1676 459 0 0 0 chr4 143083238 143083289 -12546831 + (CAA)n Simple_repeat Simple_repeat 2 52 0 1 1676 241 232 118 118 chr4 143083289 143083350 -12546770 - B1_Mur4 SINE Alu -71 79 23 1 1676 3008 225 57 42 chr4 143083421 143084324 -12545796 + RMER19B LTR ERVK 1 890 -12 1 1676 307 89 36 0 chr4 143084446 143084502 -12545618 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1676 227 154 0 0 chr4 143084655 143084694 -12545426 - PB1 SINE Alu -54 73 35 1 1676 405 0 0 0 chr4 143085252 143085297 -12544823 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1676 207 0 0 0 chr4 143085297 143085319 -12544801 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1676 451 252 15 23 chr4 143085329 143085459 -12544661 - B1_Mur4 SINE Alu -2 148 20 1 1676 479 275 105 11 chr4 143085503 143085694 -12544426 - B3 SINE B2 -7 209 1 1 1676 897 132 0 0 chr4 143085781 143085948 -12544172 + (GA)n Simple_repeat Simple_repeat 1 167 0 1 1676 1204 55 0 7 chr4 143086542 143086690 -12543430 - B1_Mus1 SINE Alu 0 148 2 1 1676 405 0 0 0 chr4 143086713 143086758 -12543362 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1676 1693 221 25 49 chr4 143087121 143087388 -12542732 - Lx4A LINE L1 -2 7056 6800 1 1676 3389 25 8 5 chr4 143087388 143087783 -12542337 + MTA_Mm LTR MaLR 1 396 0 1 1676 2779 168 31 31 chr4 143087783 143088444 -12541676 - Lx4A LINE L1 -259 6799 5620 1 1676 1523 229 54 4 chr4 143088495 143088952 -12541168 - L1_Mur2 LINE L1 -6292 420 14 1 1676 6413 112 21 16 chr4 143092570 143093523 -12536597 - RMER17B LTR ERVK 0 958 1 1 1676 495 258 113 41 chr4 143093728 143093922 -12536198 + B3 SINE B2 6 213 -3 1 1676 333 118 0 0 chr4 143094360 143094411 -12535709 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1676 386 234 92 18 chr4 143094415 143094524 -12535596 - B1_Mur2 SINE Alu -26 123 7 1 1676 1267 122 147 0 chr4 143094710 143094948 -12535172 - RLTR13D3 LTR ERVK 0 1114 842 1 1676 981 69 0 0 chr4 143094948 143095078 -12535042 + B1_Mm SINE Alu 6 135 -12 1 1676 243 0 0 0 chr4 143095079 143095106 -12535014 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1676 186 71 0 0 chr4 143095106 143095134 -12534986 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 1 1676 1155 107 41 12 chr4 143095157 143095328 -12534792 + B2_Mm2 SINE B2 2 177 -18 1 1676 330 26 0 0 chr4 143095334 143095373 -12534747 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1 1676 337 98 0 19 chr4 143095373 143095425 -12534695 - RLTR13D3 LTR ERVK -244 779 729 1 1676 24922 103 3 37 chr4 143095425 143100662 -12529458 + L1Md_F LINE L1 389 5115 -771 1 1676 1343 134 0 0 chr4 143100824 143101018 -12529102 - B2_Mm2 SINE B2 0 195 2 1 1676 204 125 0 0 chr4 143101368 143101400 -12528720 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1 1676 1079 82 0 39 chr4 143101899 143102052 -12528068 + B1_Mm SINE Alu 1 147 0 1 1676 1234 173 31 9 chr4 143102209 143102478 -12527642 + ORR1A2 LTR MaLR 9 314 -13 1 1676 2859 188 92 35 chr4 143102488 143102899 -12527221 + ORR1A2-int LTR MaLR 2 429 -1534 1 1676 474 75 0 0 chr4 143102899 143102966 -12527154 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1676 2859 188 92 35 chr4 143102966 143103270 -12526850 + ORR1A2-int LTR MaLR 430 757 -1206 1 1676 784 209 81 0 chr4 143103121 143103293 -12526827 + MT2B LTR ERVL 32 217 -384 1 1676 223 306 101 10 chr4 143103374 143103473 -12526647 - B1F1 SINE Alu -38 111 4 1 1676 230 292 0 14 chr4 143103416 143103489 -12526631 - ID_B1 SINE B4 -83 141 70 1 1676 2352 130 6 3 chr4 143103534 143103896 -12526224 - L1_Mus3 LINE L1 -1 6637 6275 1 1676 1038 60 0 0 chr4 143104259 143104393 -12525727 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1 1676 587 252 14 34 chr4 143104403 143104551 -12525569 - B1_Mur4 SINE Alu -1 149 5 1 1676 234 325 75 0 chr4 143107431 143107511 -12522609 - PB1D10 SINE Alu -31 86 1 1 1676 221 239 0 21 chr4 143108285 143108332 -12521788 - PB1D10 SINE Alu -25 92 47 1 1676 1028 109 0 20 chr4 143108389 143108539 -12521581 - B1_Mus2 SINE Alu 0 147 1 1 1676 376 252 50 16 chr4 143108595 143108716 -12521404 - B4A SINE B4 -9 283 159 1 1676 526 241 0 25 chr4 143109165 143109284 -12520836 + PB1D10 SINE Alu 1 116 -1 1 1676 243 250 0 15 chr4 143109334 143109399 -12520721 + ID_B1 SINE B4 80 143 -81 1 1676 309 173 0 0 chr4 143109348 143109400 -12520720 + PB1 SINE Alu 13 64 -63 1 1676 266 179 54 0 chr4 143109490 143109546 -12520574 + PB1D9 SINE Alu 13 71 -49 1 1676 1005 129 0 18 chr4 143109548 143109714 -12520406 + B2_Mm2 SINE B2 13 175 -20 1 1676 360 68 0 0 chr4 143109752 143109811 -12520309 + B2_Mm1a SINE B2 127 185 -8 1 1676 18196 75 6 5 chr4 143109877 143111808 -12518312 - L1Md_F2 LINE L1 0 6582 4649 1 1676 4032 49 14 0 chr4 143111808 143112294 -12517826 + MT2_Mm LTR ERVL 1 493 0 1 1676 18196 88 5 4 chr4 143112294 143113645 -12516475 - L1Md_F2 LINE L1 -1235 4648 3298 1 1676 2672 84 0 0 chr4 143113643 143113989 -12516131 - L1Md_F2 LINE L1 -5681 935 590 1 1676 3466 135 33 2 chr4 143114731 143115281 -12514839 - RMER2 LTR ERV1 0 567 1 1 1676 304 189 53 0 chr4 143115281 143115376 -12514744 - ORR1A3-int LTR MaLR -1075 888 789 1 1676 216 0 0 0 chr4 143115379 143115403 -12514717 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1676 2206 164 77 23 chr4 143115403 143115845 -12514275 - RMER15 LTR ERVL -105 470 5 1 1676 450 0 0 0 chr4 143116616 143116666 -12513454 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1676 495 0 0 0 chr4 143116666 143116720 -12513400 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1676 1069 51 7 42 chr4 143117382 143117525 -12512595 + B1_Mus2 SINE Alu 1 138 -9 1 1676 351 0 0 0 chr4 143117525 143117564 -12512556 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1676 38858 29 0 0 chr4 143117622 143124242 -12505878 - L1Md_T LINE L1 0 6585 1 1 1676 231 298 22 77 chr4 143124242 143124256 -12505864 - MT2B LTR ERVL -358 243 199 1 1676 250 299 30 0 chr4 143124256 143124323 -12505797 - B1_Mus2 SINE Alu -75 72 4 1 1676 273 222 187 49 chr4 143124338 143124374 -12505746 - B1_Mur3 SINE Alu 0 149 11 1 1676 475 165 0 12 chr4 143124374 143124460 -12505660 - MT2B LTR ERVL -342 259 175 1 1676 299 248 0 152 chr4 143124375 143124513 -12505607 - RLTR25A LTR ERVK -527 576 460 2 1676 873 174 53 16 chr4 143124476 143124663 -12505457 - ORR1A3-int LTR MaLR -1414 549 356 1 1676 331 295 41 21 chr4 143125062 143125159 -12504961 + B1_Mur2 SINE Alu 4 102 -47 2 1676 1362 133 0 0 chr4 143125468 143125663 -12504457 - B2_Mm2 SINE B2 0 195 1 2 1676 1079 82 0 39 chr4 143126537 143126690 -12503430 + B1_Mm SINE Alu 1 147 0 2 1676 1234 173 31 9 chr4 143126847 143127116 -12503004 + ORR1A2 LTR MaLR 9 314 -13 2 1676 2859 188 92 35 chr4 143127126 143127537 -12502583 + ORR1A2-int LTR MaLR 2 429 -1534 2 1676 474 75 0 0 chr4 143127537 143127604 -12502516 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1676 2859 188 92 35 chr4 143127604 143127908 -12502212 + ORR1A2-int LTR MaLR 430 757 -1206 2 1676 784 209 81 0 chr4 143127759 143127931 -12502189 + MT2B LTR ERVL 32 217 -384 2 1676 223 306 101 10 chr4 143128012 143128111 -12502009 - B1F1 SINE Alu -38 111 4 2 1676 230 292 0 14 chr4 143128054 143128127 -12501993 - ID_B1 SINE B4 -83 141 70 2 1676 2352 130 6 3 chr4 143128172 143128534 -12501586 - L1_Mus3 LINE L1 -1 6637 6275 2 1676 1038 60 0 0 chr4 143128897 143129031 -12501089 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 2 1676 587 252 14 34 chr4 143129041 143129189 -12500931 - B1_Mur4 SINE Alu -1 149 5 2 1677 234 325 75 0 chr4 143132069 143132149 -12497971 - PB1D10 SINE Alu -31 86 1 2 1677 221 239 0 21 chr4 143132923 143132970 -12497150 - PB1D10 SINE Alu -25 92 47 2 1677 1028 109 0 20 chr4 143133027 143133177 -12496943 - B1_Mus2 SINE Alu 0 147 1 2 1677 376 252 50 16 chr4 143133233 143133354 -12496766 - B4A SINE B4 -9 283 159 2 1677 526 241 0 25 chr4 143133803 143133922 -12496198 + PB1D10 SINE Alu 1 116 -1 2 1677 243 250 0 15 chr4 143133972 143134037 -12496083 + ID_B1 SINE B4 80 143 -81 2 1677 309 173 0 0 chr4 143133986 143134038 -12496082 + PB1 SINE Alu 13 64 -63 2 1677 266 179 54 0 chr4 143134128 143134184 -12495936 + PB1D9 SINE Alu 13 71 -49 2 1677 1005 129 0 18 chr4 143134186 143134352 -12495768 + B2_Mm2 SINE B2 13 175 -20 2 1677 360 68 0 0 chr4 143134390 143134449 -12495671 + B2_Mm1a SINE B2 127 185 -8 2 1677 18916 79 5 4 chr4 143134515 143136446 -12493674 - L1Md_F2 LINE L1 0 6582 4649 2 1677 4032 49 14 0 chr4 143136446 143136932 -12493188 + MT2_Mm LTR ERVL 1 493 0 2 1677 18916 87 5 3 chr4 143136932 143138283 -12491837 - L1Md_F2 LINE L1 -1235 4648 3298 2 1677 2672 84 0 0 chr4 143138281 143138627 -12491493 - L1Md_F2 LINE L1 -5681 935 590 2 1677 3466 135 33 2 chr4 143139369 143139919 -12490201 - RMER2 LTR ERV1 0 567 1 2 1677 308 204 48 0 chr4 143139919 143140022 -12490098 - ORR1A3-int LTR MaLR -1075 888 781 2 1677 304 304 88 0 chr4 143139967 143140069 -12490051 - B1_Mm SINE Alu -33 114 4 2 1677 273 222 187 49 chr4 143140084 143140120 -12490000 - B1_Mur3 SINE Alu 0 149 11 2 1677 475 165 0 12 chr4 143140120 143140206 -12489914 - MT2B LTR ERVL -342 259 175 2 1677 299 248 0 152 chr4 143140121 143140259 -12489861 - RLTR25A LTR ERVK -527 576 460 2 1677 873 174 53 16 chr4 143140222 143140409 -12489711 - ORR1A3-int LTR MaLR -1414 549 356 2 1677 331 295 41 21 chr4 143140808 143140905 -12489215 + B1_Mur2 SINE Alu 4 102 -47 2 1677 1362 133 0 0 chr4 143141214 143141409 -12488711 - B2_Mm2 SINE B2 0 195 1 2 1677 1073 82 0 45 chr4 143142283 143142437 -12487683 + B1_Mm SINE Alu 1 147 0 2 1677 1234 173 31 9 chr4 143142594 143142863 -12487257 + ORR1A2 LTR MaLR 9 314 -13 2 1677 2859 188 92 35 chr4 143142873 143143284 -12486836 + ORR1A2-int LTR MaLR 2 429 -1534 2 1677 564 65 0 0 chr4 143143284 143143361 -12486759 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1677 2859 188 92 35 chr4 143143361 143143665 -12486455 + ORR1A2-int LTR MaLR 430 757 -1206 2 1677 784 209 81 0 chr4 143143516 143143688 -12486432 + MT2B LTR ERVL 32 217 -384 2 1677 223 306 101 10 chr4 143143769 143143868 -12486252 - B1F1 SINE Alu -38 111 4 2 1677 230 292 0 14 chr4 143143811 143143884 -12486236 - ID_B1 SINE B4 -83 141 70 2 1677 2352 130 6 3 chr4 143143929 143144291 -12485829 - L1_Mus3 LINE L1 -1 6637 6275 2 1677 1131 49 0 0 chr4 143144654 143144796 -12485324 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2 1677 587 252 14 34 chr4 143144806 143144954 -12485166 - B1_Mur4 SINE Alu -1 149 5 2 1677 234 325 75 0 chr4 143147834 143147914 -12482206 - PB1D10 SINE Alu -31 86 1 2 1677 221 239 0 21 chr4 143148688 143148735 -12481385 - PB1D10 SINE Alu -25 92 47 2 1677 1028 109 0 20 chr4 143148794 143148944 -12481176 - B1_Mus2 SINE Alu 0 147 1 2 1677 376 252 50 16 chr4 143149000 143149121 -12480999 - B4A SINE B4 -9 283 159 2 1677 526 241 0 25 chr4 143149570 143149689 -12480431 + PB1D10 SINE Alu 1 116 -1 2 1677 243 250 0 15 chr4 143149739 143149804 -12480316 + ID_B1 SINE B4 80 143 -81 2 1677 309 173 0 0 chr4 143149753 143149805 -12480315 + PB1 SINE Alu 13 64 -63 2 1677 266 179 54 0 chr4 143149895 143149951 -12480169 + PB1D9 SINE Alu 13 71 -49 2 1677 1005 129 0 18 chr4 143149953 143150119 -12480001 + B2_Mm2 SINE B2 13 175 -20 2 1677 360 68 0 0 chr4 143150157 143150216 -12479904 + B2_Mm1a SINE B2 127 185 -8 2 1677 18916 79 5 4 chr4 143150282 143152213 -12477907 - L1Md_F2 LINE L1 0 6582 4649 2 1677 4032 49 14 0 chr4 143152213 143152699 -12477421 + MT2_Mm LTR ERVL 1 493 0 2 1677 18916 87 5 3 chr4 143152699 143154050 -12476070 - L1Md_F2 LINE L1 -1235 4648 3298 2 1677 2672 84 0 0 chr4 143154048 143154394 -12475726 - L1Md_F2 LINE L1 -5681 935 590 2 1677 3466 135 33 2 chr4 143155136 143155686 -12474434 - RMER2 LTR ERV1 0 567 1 2 1677 308 204 48 0 chr4 143155686 143155789 -12474331 - ORR1A3-int LTR MaLR -1075 888 781 2 1677 304 304 88 0 chr4 143155734 143155836 -12474284 - B1_Mm SINE Alu -33 114 4 2 1677 273 222 187 49 chr4 143155851 143155887 -12474233 - B1_Mur3 SINE Alu 0 149 11 2 1677 475 165 0 12 chr4 143155887 143155973 -12474147 - MT2B LTR ERVL -342 259 175 2 1677 299 248 0 152 chr4 143155888 143156026 -12474094 - RLTR25A LTR ERVK -527 576 460 2 1677 873 174 53 16 chr4 143155989 143156176 -12473944 - ORR1A3-int LTR MaLR -1414 549 356 2 1677 331 295 41 21 chr4 143156575 143156672 -12473448 + B1_Mur2 SINE Alu 4 102 -47 2 1677 1362 133 0 0 chr4 143156981 143157176 -12472944 - B2_Mm2 SINE B2 0 195 1 2 1677 1137 89 0 0 chr4 143158041 143158187 -12471933 + B1_Mus1 SINE Alu 3 148 0 2 1677 2508 193 114 65 chr4 143158281 143158671 -12471449 + ORR1A3-int LTR MaLR 33 444 -1519 2 1677 534 67 0 0 chr4 143158671 143158746 -12471374 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1677 2508 193 114 65 chr4 143158746 143159047 -12471073 + ORR1A3-int LTR MaLR 445 758 -1205 2 1677 783 209 81 0 chr4 143158898 143159070 -12471050 + MT2B LTR ERVL 32 217 -384 2 1677 218 298 95 9 chr4 143159147 143159252 -12470868 - B1F SINE Alu -34 115 2 2 1677 221 244 14 2 chr4 143159186 143159260 -12470860 - B4A SINE B4 -139 153 76 2 1677 2436 119 6 0 chr4 143159311 143159673 -12470447 - L1_Mus3 LINE L1 0 6638 6275 2 1677 1068 103 0 0 chr4 143160029 143160185 -12469935 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 2 1677 189 0 0 0 chr4 143160185 143160206 -12469914 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 2 1677 1131 101 0 0 chr4 143160206 143160374 -12469746 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 2 1677 484 299 15 0 chr4 143160378 143160515 -12469605 - B1_Mur4 SINE Alu -7 143 5 2 1677 213 312 74 12 chr4 143163397 143163478 -12466642 - PB1D10 SINE Alu -31 86 1 2 1677 389 282 8 57 chr4 143163753 143163877 -12466243 + RSINE1 SINE B4 10 127 -38 2 1677 212 239 0 21 chr4 143164232 143164279 -12465841 - PB1D10 SINE Alu -25 92 47 2 1677 1023 109 0 20 chr4 143164340 143164490 -12465630 - B1_Mus2 SINE Alu 0 147 1 2 1677 366 252 50 16 chr4 143164546 143164667 -12465453 - B4A SINE B4 -9 283 159 2 1677 1281 129 4 0 chr4 143164884 143165109 -12465011 - L1VL1 LINE L1 -5308 1114 889 2 1677 21852 63 1 0 chr4 143165103 143168747 -12461373 - L1Md_F2 LINE L1 -1 6581 2936 2 1677 6613 70 37 2 chr4 143168748 143169611 -12460509 - L1Md_F2 LINE L1 -5489 1127 235 2 1677 266 200 0 0 chr4 143170939 143170994 -12459126 - RMER4B LTR ERVK 0 585 531 2 1677 11425 80 31 0 chr4 143170994 143172542 -12457578 + L1Md_F2 LINE L1 3991 5586 -297 2 1677 8663 46 1 3 chr4 143172542 143173538 -12456582 + L1Md_F2 LINE L1 5587 6580 -2 2 1677 458 301 35 14 chr4 143174034 143174045 -12456075 - B1_Mur2 SINE Alu 0 149 139 2 1677 234 62 0 0 chr4 143174045 143174077 -12456043 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1677 458 301 35 14 chr4 143174077 143174210 -12455910 - B1_Mur2 SINE Alu -11 138 2 2 1677 37356 51 12 4 chr4 143174883 143180357 -12449763 + L1Md_T LINE L1 103 5586 -297 2 1677 8565 56 0 0 chr4 143180357 143181353 -12448767 + L1Md_T LINE L1 5587 6582 0 2 1677 1663 245 47 58 chr4 143181393 143181909 -12448211 + RLTR28 LTR ERVL 1 510 -14 2 1677 864 55 0 0 chr4 143182053 143182163 -12447957 + (GA)n Simple_repeat Simple_repeat 2 111 0 2 1677 1115 98 0 0 chr4 143182237 143182373 -12447747 + B1_Mm SINE Alu 1 136 -11 2 1677 202 29 0 54 chr4 143182373 143182410 -12447710 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1677 7316 94 12 9 chr4 143182536 143184116 -12446004 - L1_Mus2 LINE L1 0 6566 4976 2 1677 186 43 0 0 chr4 143186055 143186078 -12444042 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1677 595 262 13 52 chr4 143187683 143187836 -12442284 - B1_Mur4 SINE Alu -1 149 3 2 1677 1131 97 7 0 chr4 143188117 143188262 -12441858 + B1_Mus2 SINE Alu 2 147 0 2 1677 326 298 115 8 chr4 143188848 143188970 -12441150 - B1_Mur2 SINE Alu 0 149 15 2 1677 290 225 12 0 chr4 143189016 143189096 -12441024 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 2 1677 285 51 0 0 chr4 143189197 143189236 -12440884 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2 1677 959 157 13 0 chr4 143189236 143189395 -12440725 - B2_Mm2 SINE B2 -34 161 1 2 1677 1159 221 144 9 chr4 143189780 143190100 -12440020 - Lx3C LINE L1 -1 6975 6613 2 1677 2611 204 31 9 chr4 143190093 143190722 -12439398 + Lx3C LINE L1 5319 5962 -1014 2 1677 282 247 13 27 chr4 143191119 143191194 -12438926 + B1_Mus1 SINE Alu 9 82 -66 2 1677 19832 149 7 14 chr4 143191852 143194945 -12435175 - L1_Mm LINE L1 0 5883 2821 2 1677 3685 30 136 2 chr4 143194945 143195379 -12434741 - MT2_Mm LTR ERVL -1 492 1 3 1677 19832 149 7 14 chr4 143195379 143195661 -12434459 - L1_Mm LINE L1 -3063 2820 2534 2 1677 643 199 19 0 chr4 143195650 143195806 -12434314 - L1_Mur3 LINE L1 -3159 2721 2563 3 1677 3148 208 47 8 chr4 143195811 143196528 -12433592 - RMER6A LTR ERVK -11 745 1 3 1677 624 243 53 0 chr4 143196586 143196738 -12433382 - RMER2 LTR ERV1 0 567 408 3 1677 234 0 0 0 chr4 143196739 143196765 -12433355 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1677 933 9 0 0 chr4 143196769 143196875 -12433245 + (GGGAGA)n Simple_repeat Simple_repeat 3 108 0 3 1677 410 321 7 7 chr4 143198214 143198352 -12431768 - B1_Mur2 SINE Alu -10 139 2 3 1677 282 249 0 13 chr4 143198485 143198562 -12431558 + L1_Mur2 LINE L1 5531 5612 -274 3 1677 1198 188 70 0 chr4 143198562 143198791 -12431329 - RMER17B LTR ERVK -4 954 710 3 1677 186 138 52 0 chr4 143198801 143198859 -12431261 + GA-rich Low_complexity Low_complexity 2 62 0 3 1677 234 298 0 0 chr4 143198975 143199032 -12431088 - 7SLRNA srpRNA srpRNA -224 90 34 3 1677 213 163 116 0 chr4 143199002 143199045 -12431075 - B1F SINE Alu -86 63 16 3 1677 180 77 0 0 chr4 143199595 143199621 -12430499 + (CTTG)n Simple_repeat Simple_repeat 1 26 0 3 1677 1127 77 6 0 chr4 143199621 143199789 -12430331 + (TTCC)n Simple_repeat Simple_repeat 2 170 0 3 1677 744 164 0 0 chr4 143199789 143199923 -12430197 + CT-rich Low_complexity Low_complexity 2 135 0 3 1677 1209 75 7 0 chr4 143199934 143200081 -12430039 - B1_Mus1 SINE Alu 0 148 1 3 1677 304 331 30 8 chr4 143200104 143200238 -12429882 - B1_Mur1 SINE Alu -1 148 12 3 1677 379 138 0 22 chr4 143200535 143200624 -12429496 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 3 1677 25 31 0 0 chr4 143200655 143200687 -12429433 + AT_rich Low_complexity Low_complexity 1 32 0 3 1677 266 330 35 18 chr4 143202683 143202797 -12427323 - ID_B1 SINE B4 -2 222 107 3 1677 2356 237 46 13 chr4 143203045 143203652 -12426468 - Lx4A LINE L1 -41 7017 6391 3 1677 1842 166 64 3 chr4 143203646 143204038 -12426082 - Lx4A LINE L1 -1024 6034 5619 3 1677 1431 245 48 6 chr4 143204033 143204516 -12425604 - L1_Mur2 LINE L1 -6294 418 21 3 1677 2162 133 91 8 chr4 143208005 143208377 -12421743 - RLTR9D LTR ERVK 0 403 1 3 1677 189 0 0 0 chr4 143208502 143208523 -12421597 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1677 328 305 122 23 chr4 143208724 143208855 -12421265 + B3 SINE B2 6 149 -67 3 1677 2754 179 40 32 chr4 143209138 143209693 -12420427 - RLTR31_Mm LTR ERVK 0 561 3 3 1677 7900 107 16 4 chr4 143209843 143211303 -12418817 - L1Md_F3 LINE L1 0 6584 5216 3 1677 424 372 50 5 chr4 143211466 143211666 -12418454 - ID_B1 SINE B4 -5 219 11 3 1677 259 301 35 88 chr4 143211936 143212049 -12418071 + PB1D7 SINE Alu 7 113 -7 3 1677 376 308 35 57 chr4 143212556 143212664 -12417456 - B1F1 SINE Alu -9 140 34 3 1677 3134 22 120 21 chr4 143212664 143213038 -12417082 + IAPLTR2a LTR ERVK 1 411 0 3 1677 376 308 35 57 chr4 143213038 143213070 -12417050 - B1F1 SINE Alu -116 33 3 3 1677 3658 117 150 5 chr4 143213112 143213858 -12416262 - L1_Mus3 LINE L1 0 6638 5785 3 1677 18449 94 7 6 chr4 143213867 143217179 -12412941 - L1_Mus1 LINE L1 0 6567 3247 3 1677 36956 65 5 2 chr4 143217170 143223291 -12406829 - L1Md_F2 LINE L1 -4 6578 439 3 1677 13468 141 25 5 chr4 143223290 143226183 -12403937 - L1_Mus1 LINE L1 -2603 3280 329 3 1677 1857 172 26 17 chr4 143226275 143226636 -12403484 - RLTR9B LTR ERVK 0 437 73 3 1677 354 354 8 0 chr4 143226633 143226763 -12403357 - ID_B1 SINE B4 -29 195 65 3 1677 239 319 8 57 chr4 143227088 143227211 -12402909 + PB1D7 SINE Alu 1 117 -3 3 1677 3966 73 87 2 chr4 143227238 143227758 -12402362 - LTRIS2 LTR ERV1 0 564 1 3 1677 873 230 29 0 chr4 143227758 143227962 -12402158 - RLTR1B-int LTR ERV1 -66 4997 4788 3 1677 7235 124 46 35 chr4 143227953 143230028 -12400092 - RLTR1B-int LTR ERV1 -792 4271 1400 3 1677 1271 101 26 11 chr4 143230028 143230218 -12399902 - B2_Mm1a SINE B2 0 193 1 3 1677 7235 102 45 47 chr4 143230218 143230457 -12399663 - RLTR1B-int LTR ERV1 -1900 1399 1164 3 1677 540 0 0 0 chr4 143230457 143230517 -12399603 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1677 7235 238 86 37 chr4 143230517 143231371 -12398749 - RLTR1B-int LTR ERV1 -3401 1662 760 3 1677 4851 126 18 15 chr4 143231362 143232098 -12398022 - RMER16-int LTR ERVK -3960 1446 709 3 1677 483 299 14 7 chr4 143232103 143232248 -12397872 - RLTR1B-int LTR ERV1 -7020 536 391 3 1677 1837 75 4 25 chr4 143232688 143232963 -12397157 - LTRIS2 LTR ERV1 -2 562 294 3 1677 13588 82 2 0 chr4 143232963 143234782 -12395338 + L1Md_F2 LINE L1 3621 5443 -440 3 1677 1813 125 34 39 chr4 143234782 143235140 -12394980 + IAPLTR1_Mm LTR ERVK 1 356 -11 3 1677 59254 10 5 2 chr4 143235141 143241604 -12388516 + IAPEz-int LTR ERVK 1 6481 0 3 1677 1813 125 34 39 chr4 143241604 143241962 -12388158 + IAPLTR1_Mm LTR ERVK 1 356 -11 3 1677 1090 95 0 0 chr4 143241970 143242118 -12388002 + L1Md_F2 LINE L1 5438 5585 -298 3 1677 7231 70 14 55 chr4 143242119 143243156 -12386964 + L1Md_F2 LINE L1 5587 6580 -2 3 1677 1327 103 5 0 chr4 143243471 143243656 -12386464 + B2_Mm1a SINE B2 1 186 -7 3 1677 231 190 0 0 chr4 143245105 143245163 -12384957 + A-rich Low_complexity Low_complexity 5 62 0 3 1677 569 264 0 75 chr4 143246753 143246913 -12383207 - B1_Mur4 SINE Alu 0 149 2 3 1677 283 297 102 0 chr4 143247758 143247876 -12382244 - B1_Mur2 SINE Alu 0 149 20 3 1677 356 138 0 15 chr4 143247933 143247999 -12382121 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1677 192 77 0 0 chr4 143247999 143248025 -12382095 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 1677 1046 169 0 6 chr4 143248167 143248345 -12381775 - B2_Mm2 SINE B2 -18 177 1 3 1677 2350 110 6 9 chr4 143248367 143248715 -12381405 - L1_Mus1 LINE L1 0 6567 6221 3 1677 1115 234 102 43 chr4 143249100 143249452 -12380668 - Lx3C LINE L1 0 6976 6604 3 1677 2903 196 10 4 chr4 143249449 143250053 -12380067 + Lx3C LINE L1 5330 5934 -1042 3 1677 888 61 0 0 chr4 143250087 143250202 -12379918 + (GA)n Simple_repeat Simple_repeat 2 116 0 3 1677 1068 96 7 0 chr4 143250244 143250390 -12379730 + B1_Mus1 SINE Alu 2 148 0 3 1677 333 256 0 35 chr4 143250764 143250849 -12379271 + B1_Mus1 SINE Alu 9 90 -58 3 1677 1913 153 60 23 chr4 143251863 143252442 -12377678 - RLTR13D3 LTR ERVK -2 1112 363 3 1677 552 15 0 0 chr4 143252445 143252510 -12377610 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1677 370 309 46 92 chr4 143252585 143252781 -12377339 - B3A SINE B2 -4 194 8 3 1677 234 326 23 0 chr4 143252800 143252886 -12377234 - B1_Mur1 SINE Alu -13 136 49 3 1677 4220 15 25 0 chr4 143253136 143253606 -12376514 - LTRIS_Mm LTR ERV1 0 482 1 3 1677 12108 98 37 2 chr4 143253698 143256219 -12373901 - L1_Mus1 LINE L1 -1 6653 3949 3 1677 3636 213 32 30 chr4 143256213 143257056 -12373064 - Lx4B LINE L1 -150 6908 6064 3 1677 1411 208 16 16 chr4 143257071 143257430 -12372690 - ORR1A3 LTR MaLR -14 356 21 3 1677 5600 204 11 10 chr4 143257431 143258071 -12372049 - Lx4B LINE L1 -1123 5927 5273 3 1677 215 31 31 0 chr4 143258071 143258103 -12372017 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1677 5600 212 24 17 chr4 143258103 143258583 -12371537 - Lx4B LINE L1 -605 5272 4785 3 1677 2843 58 0 3 chr4 143258583 143258929 -12371191 - IAPLTR4 LTR ERVK 0 345 1 3 1677 5600 212 24 17 chr4 143258929 143259171 -12370949 - Lx4B LINE L1 -1093 4784 4551 3 1677 5268 179 36 21 chr4 143259170 143260105 -12370015 - Lx4B LINE L1 -1937 3940 2988 3 1677 4802 38 2 0 chr4 143260105 143260665 -12369455 - L1Md_T LINE L1 0 6582 6022 3 1677 5268 179 36 21 chr4 143260665 143260896 -12369224 - Lx4B LINE L1 -2890 2987 2757 3 1678 21 0 0 0 chr4 143261771 143261792 -12368328 + AT_rich Low_complexity Low_complexity 1 21 0 3 1678 1600 232 197 4 chr4 143263511 143264013 -12366107 - Lx4B LINE L1 -3122 2764 2157 3 1678 24236 105 106 20 chr4 143264014 143268912 -12361208 + L1Md_F2 LINE L1 213 5531 -352 3 1678 2180 109 227 44 chr4 143269021 143269501 -12360619 + RLTR6_Mm LTR ERV1 37 604 -50 3 1678 69109 13 12 1 chr4 143269502 143277193 -12352927 + RLTR6-int LTR ERV1 1 7778 0 3 1678 2223 113 226 26 chr4 143277302 143277766 -12352354 + RLTR6_Mm LTR ERV1 37 593 -61 3 1678 420 57 0 0 chr4 143277766 143277819 -12352301 + L1Md_F2 LINE L1 5533 5585 -298 3 1678 7208 75 21 7 chr4 143277820 143278802 -12351318 + L1Md_F2 LINE L1 5587 6582 0 3 1678 1551 188 70 22 chr4 143278850 143279099 -12351021 + Lx LINE L1 6265 6531 -123 3 1678 591 15 0 0 chr4 143279099 143279167 -12350953 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1678 1551 188 70 22 chr4 143279167 143279287 -12350833 + Lx LINE L1 6532 6651 -3 3 1678 3121 224 36 14 chr4 143279282 143280454 -12349666 - L1_Mur2 LINE L1 -3765 2112 918 3 1678 423 206 37 18 chr4 143280747 143280856 -12349264 + Lx2B LINE L1 6871 6981 -19 3 1678 1623 242 109 14 chr4 143280863 143281795 -12348325 - L1_Mur3 LINE L1 -3957 1920 892 3 1678 217 333 0 0 chr4 143282199 143282271 -12347849 - B2_Mm2 SINE B2 -119 76 5 3 1678 220 283 0 0 chr4 143282281 143282341 -12347779 - B1_Mur1 SINE Alu -6 143 84 3 1678 400 356 0 0 chr4 143282570 143282685 -12347435 - B1_Mur2 SINE Alu -34 115 1 3 1678 445 400 5 5 chr4 143282805 143283011 -12347109 - ID_B1 SINE B4 -8 216 11 3 1678 222 333 0 0 chr4 143283036 143283090 -12347030 - PB1 SINE Alu -54 73 20 3 1678 277 75 38 0 chr4 143283863 143283916 -12346204 + (TTA)n Simple_repeat Simple_repeat 1 55 0 3 1678 1093 78 0 0 chr4 143283918 143284059 -12346061 - B1_Mus1 SINE Alu -7 141 1 3 1678 21 0 0 0 chr4 143284062 143284083 -12346037 + AT_rich Low_complexity Low_complexity 1 21 0 3 1678 373 293 59 33 chr4 143284098 143284248 -12345872 - B1_Mus2 SINE Alu -2 147 2 3 1678 1875 251 25 31 chr4 143284933 143285446 -12344674 + RLTR28 LTR ERVL 1 510 -14 3 1678 396 143 0 0 chr4 143287801 143287871 -12342249 + (A)n Simple_repeat Simple_repeat 1 70 0 3 1678 368 353 8 8 chr4 143289499 143289619 -12340501 - B1_Mur4 SINE Alu -29 121 2 3 1678 362 289 115 8 chr4 143290460 143290582 -12339538 - B1_Mur2 SINE Alu 0 149 15 3 1678 349 172 35 0 chr4 143290630 143290717 -12339403 + (CATA)n Simple_repeat Simple_repeat 2 91 0 3 1678 906 171 11 17 chr4 143290869 143291047 -12339073 - B2_Mm2 SINE B2 -18 177 1 3 1678 585 0 0 0 chr4 143291428 143291493 -12338627 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 3 1678 947 228 132 10 chr4 143291507 143291795 -12338325 - Lx3C LINE L1 -41 6935 6613 3 1678 2755 189 2 3 chr4 143291788 143292410 -12337710 + Lx2B LINE L1 5319 5938 -1062 3 1678 274 250 33 0 chr4 143292846 143292906 -12337214 + PB1D9 SINE Alu 18 79 -41 3 1678 12060 107 11 11 chr4 143293231 143295873 -12334247 + L1Md_F LINE L1 380 3022 -2861 3 1678 24 32 0 0 chr4 143296171 143296202 -12333918 + AT_rich Low_complexity Low_complexity 1 31 0 3 1678 225 345 0 52 chr4 143296612 143296728 -12333392 + PB1D7 SINE Alu 1 110 -10 4 1678 1238 65 6 0 chr4 143297029 143297198 -12332922 + (TTCTCC)n Simple_repeat Simple_repeat 6 175 0 4 1678 215 209 15 0 chr4 143297198 143297238 -12332882 + polypyrimidine Low_complexity Low_complexity 32 71 0 4 1678 1015 115 6 11 chr4 143297238 143297414 -12332706 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 4 1678 215 209 15 0 chr4 143297414 143297440 -12332680 + polypyrimidine Low_complexity Low_complexity 5 31 0 4 1678 3788 164 10 55 chr4 143299077 143299896 -12330224 + L1_Mur2 LINE L1 5095 5876 -1 4 1678 1151 128 6 0 chr4 143299940 143300112 -12330008 + B2_Mm2 SINE B2 1 173 -22 4 1678 413 54 309 30 chr4 143300138 143300250 -12329870 + B2_Mm2 SINE B2 46 193 -2 4 1678 681 165 0 0 chr4 143300515 143300636 -12329484 - L1_Mur2 LINE L1 -782 5095 4975 4 1678 793 166 6 11 chr4 143300634 143300817 -12329303 - L1_Mur2 LINE L1 -1299 4578 4397 4 1678 6302 114 21 17 chr4 143300840 143301982 -12328138 - L1_Mus3 LINE L1 -6 6632 5485 4 1678 10392 135 23 151 chr4 143301972 143302630 -12327490 - L1_Mus3 LINE L1 -1274 4609 3931 4 1678 249 33 0 0 chr4 143302630 143302660 -12327460 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 1678 1117 114 0 0 chr4 143302660 143302818 -12327302 - B2_Mm2 SINE B2 -37 158 1 4 1678 10392 135 23 151 chr4 143302818 143303252 -12326868 - L1_Mus3 LINE L1 -1953 3930 3491 4 1678 189 0 0 0 chr4 143303252 143303273 -12326847 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 4 1678 10392 135 23 151 chr4 143303273 143303472 -12326648 - L1_Mus3 LINE L1 -2393 3490 3294 4 1678 4366 20 0 0 chr4 143303472 143303965 -12326155 - MT2_Mm LTR ERVL 0 493 1 4 1678 10392 135 23 151 chr4 143303965 143304003 -12326117 - L1_Mus3 LINE L1 -2590 3293 3261 4 1678 373 179 46 35 chr4 143304003 143304090 -12326030 - ORR1A3-int LTR MaLR -1323 640 553 4 1678 10392 135 23 151 chr4 143304090 143305274 -12324846 - L1_Mus3 LINE L1 -2590 3260 2205 4 1678 809 191 12 0 chr4 143305310 143305483 -12324637 + CT-rich Low_complexity Low_complexity 3 177 0 4 1678 877 137 6 35 chr4 143305483 143305501 -12324619 - L1_Mus3 LINE L1 -3650 2233 2219 4 1678 521 79 0 0 chr4 143305501 143305615 -12324505 - L1_Mus1 LINE L1 0 6567 6483 4 1678 865 159 0 0 chr4 143305615 143305747 -12324373 - B1_Mus1 SINE Alu -16 132 1 4 1678 877 137 6 35 chr4 143305747 143305900 -12324220 - L1_Mus3 LINE L1 -3665 2218 2067 4 1678 1046 122 0 7 chr4 143305932 143306081 -12324039 - B1_Mus1 SINE Alu 0 148 1 4 1678 221 139 23 0 chr4 143306100 143306143 -12323977 + CT-rich Low_complexity Low_complexity 5 48 0 4 1678 1900 205 44 16 chr4 143306143 143306689 -12323431 - L1_Mur2 LINE L1 -2752 3128 2568 4 1678 3166 206 57 15 chr4 143306694 143307409 -12322711 - RMER6A LTR ERVK -11 745 1 4 1678 267 227 93 0 chr4 143307466 143307541 -12322579 - RMER2 LTR ERV1 0 567 486 4 1678 992 142 0 0 chr4 143308193 143308341 -12321779 - B1_Mus1 SINE Alu 0 148 1 4 1678 368 294 33 47 chr4 143308364 143308514 -12321606 - B1_Mur2 SINE Alu -1 148 1 4 1678 213 357 12 60 chr4 143308514 143308531 -12321589 - ID_B1 SINE B4 0 224 66 4 1678 486 0 0 0 chr4 143308795 143308849 -12321271 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1678 234 235 0 0 chr4 143308862 143308913 -12321207 + GA-rich Low_complexity Low_complexity 2 52 0 4 1678 7075 78 4 5 chr4 143309499 143310929 -12319191 - L1Md_F2 LINE L1 -2 6580 5150 4 1678 3649 96 134 7 chr4 143310929 143311505 -12318615 - L1Md_F2 LINE L1 0 6582 5934 4 1678 15190 89 6 20 chr4 143311515 143313814 -12316306 - L1_Mm LINE L1 -216 5667 3402 4 1678 180 0 0 0 chr4 143313909 143313929 -12316191 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 4 1678 1948 262 41 10 chr4 143313943 143314556 -12315564 - Lx4A LINE L1 -40 7018 6387 4 1678 1751 177 37 7 chr4 143314546 143314950 -12315170 - Lx4A LINE L1 -1024 6034 5619 4 1678 1196 254 63 4 chr4 143314946 143315430 -12314690 - L1_Mur2 LINE L1 -6291 795 388 4 1678 435 289 122 43 chr4 143319288 143319476 -12310644 + B3 SINE B2 14 216 0 4 1678 2396 192 21 52 chr4 143319694 143320167 -12309953 - RLTR31_Mm LTR ERVK 0 561 102 4 1678 936 146 0 0 chr4 143320167 143320311 -12309809 - B1_Mus1 SINE Alu 0 148 5 4 1678 2396 192 21 52 chr4 143320311 143320414 -12309706 - RLTR31_Mm LTR ERVK -460 101 3 4 1678 341 272 69 17 chr4 143320664 143320780 -12309340 - B1_Mm SINE Alu -20 127 6 4 1678 388 246 32 0 chr4 143320823 143320949 -12309171 + Lx2B LINE L1 6871 7000 0 4 1678 774 269 33 136 chr4 143320948 143321361 -12308759 - L1_Mur3 LINE L1 -3957 1923 1575 4 1678 1615 145 20 20 chr4 143321361 143321656 -12308464 - L1_Mus4 LINE L1 -3 6633 6339 4 1678 774 269 33 136 chr4 143321656 143321884 -12308236 - L1_Mur3 LINE L1 -4306 1574 1348 4 1678 424 377 50 5 chr4 143322059 143322259 -12307861 - ID_B1 SINE B4 -5 219 11 4 1678 1045 112 0 0 chr4 143322619 143322762 -12307358 + B1_Mm SINE Alu 2 144 -3 4 1678 183 80 0 0 chr4 143322763 143322788 -12307332 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 4 1678 1153 101 0 11 chr4 143322788 143322969 -12307151 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 4 1678 204 125 0 0 chr4 143323484 143323516 -12306604 + (CTG)n Simple_repeat Simple_repeat 1 32 0 4 1678 978 62 0 34 chr4 143325457 143325606 -12304514 - L1Md_F2 LINE L1 -1 6581 6438 4 1678 1054 45 0 0 chr4 143325606 143325739 -12304381 - L1Md_F2 LINE L1 -356 6226 6094 4 1678 4613 132 1 24 chr4 143325735 143326657 -12303463 - L1Md_F LINE L1 -4499 1384 480 4 1678 2625 79 3 17 chr4 143326698 143327058 -12303062 + L1Md_F2 LINE L1 6228 6582 0 4 1678 6480 88 26 25 chr4 143327064 143327147 -12302973 + L1Md_F2 LINE L1 5623 5705 -877 4 1678 2346 69 119 11 chr4 143327147 143327499 -12302621 - RLTR10 LTR ERVK 0 390 1 4 1678 6480 88 26 25 chr4 143327499 143328372 -12301748 + L1Md_F2 LINE L1 5706 6580 -2 4 1678 1084 102 0 0 chr4 143328535 143328682 -12301438 - B1_Mm SINE Alu 0 147 1 4 1678 333 346 16 8 chr4 143328755 143328883 -12301237 + ID_B1 SINE B4 93 221 -3 4 1678 241 357 0 23 chr4 143329462 143329548 -12300572 - B1_Mus1 SINE Alu -61 87 4 4 1678 1563 137 0 0 chr4 143329916 143330157 -12299963 + L1VL1 LINE L1 129 369 -6053 4 1678 929 57 0 8 chr4 143330157 143330282 -12299838 + (TTCTC)n Simple_repeat Simple_repeat 1 124 0 4 1678 449 220 10 30 chr4 143330334 143330451 -12299669 + RLTR11A LTR ERVK 1 106 -347 4 1678 472 312 14 0 chr4 143330682 143330820 -12299300 + B1_Mus1 SINE Alu 1 140 -8 4 1678 5165 122 11 4 chr4 143330856 143331657 -12298463 + L1_Mus4 LINE L1 5827 6633 -3 4 1678 694 229 101 10 chr4 143331695 143331978 -12298142 - RMER19B LTR ERVK -423 314 1 4 1678 222 295 16 47 chr4 143332133 143332197 -12297923 - B1_Mur3 SINE Alu -87 62 1 4 1678 579 15 0 0 chr4 143333550 143333618 -12296502 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1678 1042 141 35 23 chr4 143333743 143333917 -12296203 + B2_Mm2 SINE B2 3 178 -17 4 1678 7064 105 3 2 chr4 143334131 143335154 -12294966 - L1_Mus1 LINE L1 -1 6566 5546 4 1678 400 298 24 28 chr4 143335701 143335912 -12294208 + RNERVK23-int LTR ERVK 181 390 -6854 4 1678 297 270 74 86 chr4 143337250 143337412 -12292708 + RNERVK23-int LTR ERVK 1652 1811 -6406 4 1678 3829 313 70 60 chr4 143337584 143341352 -12288768 + RNERVK23-int LTR ERVK 1603 5731 -2486 4 1678 363 307 21 21 chr4 143341643 143341786 -12288334 + RNERVK23-int LTR ERVK 6189 6331 -1886 4 1678 270 272 0 0 chr4 143342242 143342323 -12287797 + RNERVK23-int LTR ERVK 6808 6888 -1329 4 1678 1301 326 16 16 chr4 143342672 143343224 -12286896 + RNERVK23-int LTR ERVK 7246 7797 -420 4 1678 17754 152 7 42 chr4 143343997 143346787 -12283333 - L1VL1 LINE L1 -321 5562 2863 4 1678 1045 91 0 0 chr4 143346787 143346930 -12283190 - B1_Mus1 SINE Alu 0 148 6 4 1678 443 180 16 119 chr4 143346822 143346948 -12283172 - MT2B LTR ERVL -337 264 152 4 1678 227 259 19 77 chr4 143346828 143346983 -12283137 - ORR1B1-int LTR MaLR -756 753 608 4 1678 17754 152 7 42 chr4 143346983 143349522 -12280598 - L1VL1 LINE L1 -321 2862 404 4 1678 312 200 39 26 chr4 143350180 143350257 -12279863 + RMER15 LTR ERVL 408 485 -90 4 1678 218 306 0 0 chr4 143350351 143350400 -12279720 - ID4 SINE ID -32 51 3 4 1678 218 209 0 0 chr4 143350429 143350472 -12279648 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1678 327 234 57 105 chr4 143350513 143350618 -12279502 - B1_Mm SINE Alu -47 100 1 4 1678 356 207 85 0 chr4 143350660 143350742 -12279378 - B1_Mur4 SINE Alu -15 135 47 4 1678 457 44 29 0 chr4 143350742 143350810 -12279310 + (TAA)n Simple_repeat Simple_repeat 1 70 0 4 1678 686 306 47 17 chr4 143350820 143351053 -12279067 + RLTR16 LTR ERVK 24 263 -242 4 1678 557 257 103 23 chr4 143351337 143351512 -12278608 - B3 SINE B2 -8 208 20 4 1678 491 174 130 0 chr4 143351553 143351645 -12278475 - B1_Mur4 SINE Alu -5 145 42 4 1678 450 302 8 25 chr4 143351786 143351908 -12278212 - RSINE1 SINE B4 -38 127 8 4 1678 440 254 0 83 chr4 143351966 143352086 -12278034 - B1_Mm SINE Alu -36 111 2 4 1678 821 10 10 0 chr4 143352096 143352194 -12277926 + (TTCTC)n Simple_repeat Simple_repeat 4 102 0 4 1678 410 102 0 17 chr4 143352205 143352260 -12277860 + Lx4B LINE L1 6437 6491 -567 4 1678 4083 83 42 4 chr4 143352260 143352790 -12277330 - L1Md_F2 LINE L1 -4 6578 6029 4 1678 623 279 7 26 chr4 143352883 143353034 -12277086 - B1_Mur2 SINE Alu -1 148 1 4 1678 341 238 33 18 chr4 143353368 143353485 -12276635 - RLTR13D3 LTR ERVK -42 1072 987 4 1678 261 0 0 0 chr4 143353492 143353521 -12276599 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1678 223 167 0 0 chr4 143353769 143353805 -12276315 - B2_Mm2 SINE B2 -157 38 3 4 1678 28 48 0 0 chr4 143353815 143353857 -12276263 + AT_rich Low_complexity Low_complexity 1 42 0 4 1678 385 297 0 0 chr4 143354437 143354538 -12275582 - ID_B1 SINE B4 -11 213 113 4 1678 676 267 38 34 chr4 143354758 143354967 -12275153 + B3 SINE B2 2 211 -5 4 1678 459 195 25 0 chr4 143354967 143355085 -12275035 + GA-rich Low_complexity Low_complexity 1 121 0 4 1678 1506 28 0 0 chr4 143355094 143355273 -12274847 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 1678 1204 231 26 15 chr4 143356514 143356787 -12273333 - ORR1A3 LTR MaLR 0 326 51 4 1678 2494 70 3 0 chr4 143356787 143357114 -12273006 + L1_Mm LINE L1 3261 3588 -2295 4 1678 536 144 0 22 chr4 143357104 143357190 -12272930 + L1Md_A LINE L1 915 1000 -5724 4 1678 3120 34 0 25 chr4 143357190 143357556 -12272564 + L1Md_F3 LINE L1 6214 6570 -14 4 1678 243 152 0 0 chr4 143357591 143357637 -12272483 + A-rich Low_complexity Low_complexity 1 46 0 4 1678 245 187 0 179 chr4 143357639 143357717 -12272403 - ORR1A1 LTR MaLR -223 106 43 4 1678 433 248 0 0 chr4 143357690 143357799 -12272321 - ORR1A1 LTR MaLR -237 109 1 4 1678 1854 224 48 10 chr4 143358421 143358836 -12271284 + Lx4B LINE L1 6624 7054 -4 4 1678 372 286 61 54 chr4 143359018 143359166 -12270954 + B1F SINE Alu 1 149 0 4 1678 40 49 0 0 chr4 143359226 143359287 -12270833 + AT_rich Low_complexity Low_complexity 1 61 0 4 1678 1679 264 28 21 chr4 143359287 143359720 -12270400 - Lx5 LINE L1 -5 7045 6610 5 1678 4462 139 37 94 chr4 143359725 143360288 -12269832 - RLTR13D6 LTR ERVK 0 902 377 5 1678 207 0 0 0 chr4 143360288 143360311 -12269809 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1678 1161 103 7 0 chr4 143360315 143360461 -12269659 - B1_Mm SINE Alu 0 147 1 5 1678 4462 139 37 94 chr4 143360461 143360810 -12269310 - RLTR13D6 LTR ERVK -526 376 37 5 1678 260 182 23 0 chr4 143361146 143361190 -12268930 + RLTR19B LTR ERVK 6 50 -665 5 1678 2930 96 0 0 chr4 143361190 143361555 -12268565 - RLTR8 LTR ERVK 0 365 1 5 1678 19052 94 25 50 chr4 143361555 143362504 -12267616 - SRV_MM-int LTR ERVK 0 6167 5228 5 1678 180 213 146 21 chr4 143362504 143362552 -12267568 - L4 LINE RTE -879 1150 1097 5 1678 19052 94 25 50 chr4 143362552 143364422 -12265698 - SRV_MM-int LTR ERVK 0 5227 3372 5 1678 3214 41 11 0 chr4 143364431 143364798 -12265322 - L1Md_F3 LINE L1 0 6584 6214 5 1678 3168 169 19 3 chr4 143364798 143365368 -12264752 - L1Md_A LINE L1 -5724 1000 422 5 1678 15182 95 7 12 chr4 143365368 143367428 -12262692 - SRV_MM-int LTR ERVK -2782 3385 1336 5 1678 2325 129 76 3 chr4 143367438 143367795 -12262325 - SRV_MM-int LTR ERVK -5157 1010 628 5 1678 1731 207 159 10 chr4 143368080 143368556 -12261564 + RMER4B LTR ERVK 10 556 -29 5 1678 619 116 0 0 chr4 143368566 143368661 -12261459 + B1_Mm SINE Alu 40 134 -13 5 1678 459 0 0 0 chr4 143368661 143368712 -12261408 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 5 1678 264 174 0 0 chr4 143368712 143368758 -12261362 + RMER4B LTR ERVK 540 585 0 5 1678 21 36 0 0 chr4 143370014 143370042 -12260078 + AT_rich Low_complexity Low_complexity 1 28 0 5 1678 517 209 0 209 chr4 143370048 143370235 -12259885 - B1_Mus1 SINE Alu 0 148 1 5 1678 22 35 0 0 chr4 143370236 143370265 -12259855 + AT_rich Low_complexity Low_complexity 1 29 0 5 1678 346 190 33 77 chr4 143370575 143370666 -12259454 + ID_B1 SINE B4 104 190 -34 5 1678 4231 154 39 18 chr4 143370763 143371475 -12258645 - Lx2 LINE L1 0 6997 6271 5 1678 439 263 24 88 chr4 143371574 143371699 -12258421 + B1_Mur1 SINE Alu 1 117 -32 5 1678 309 240 216 10 chr4 143371802 143371899 -12258221 + B3 SINE B2 64 180 -36 5 1678 259 231 39 0 chr4 143371893 143371945 -12258175 + B1F1 SINE Alu 88 141 -8 5 1678 224 283 62 52 chr4 143372066 143372163 -12257957 - PB1 SINE Alu -19 108 11 5 1678 597 246 30 7 chr4 143372631 143372766 -12257354 + ID_B1 SINE B4 78 215 -9 5 1678 219 354 110 0 chr4 143372768 143372850 -12257270 + RSINE1 SINE B4 1 91 -74 5 1678 21 0 0 0 chr4 143372850 143372871 -12257249 + AT_rich Low_complexity Low_complexity 1 21 0 5 1678 321 47 0 0 chr4 143372909 143372952 -12257168 + (CAA)n Simple_repeat Simple_repeat 2 44 0 5 1678 556 298 85 10 chr4 143372990 143373190 -12256930 + B3 SINE B2 2 216 0 5 1678 240 35 0 0 chr4 143373194 143373223 -12256897 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 1678 319 21 20 20 chr4 143373652 143373701 -12256419 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1678 1124 60 15 0 chr4 143373703 143373836 -12256284 - B1_Mm SINE Alu -12 135 1 5 1678 473 244 102 39 chr4 143373865 143373993 -12256127 + B1_Mur2 SINE Alu 5 140 -9 5 1678 477 167 19 47 chr4 143374133 143374240 -12255880 + B1_Mur3 SINE Alu 14 117 -32 5 1678 495 0 0 0 chr4 143374240 143374295 -12255825 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1678 267 341 0 43 chr4 143374470 143374562 -12255558 - ID_B1 SINE B4 -13 211 124 5 1678 715 205 43 18 chr4 143374567 143374731 -12255389 - URR1A DNA MER1_type -6 220 53 5 1678 212 240 184 13 chr4 143374760 143374836 -12255284 - ID_B1 SINE B4 -101 123 35 5 1678 271 353 60 0 chr4 143374865 143374981 -12255139 - B1F1 SINE Alu -20 129 7 5 1678 3341 147 14 107 chr4 143375181 143375911 -12254209 - RLTR22_Mur LTR ERVK -821 1027 366 5 1678 1889 192 72 21 chr4 143375944 143376375 -12253745 + MTC-int LTR MaLR 2 454 -804 5 1678 456 253 0 0 chr4 143376386 143376477 -12253643 + B1_Mur4 SINE Alu 39 129 -21 5 1678 225 0 0 0 chr4 143376485 143376510 -12253610 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1678 652 293 11 5 chr4 143376548 143376730 -12253390 + B3A SINE B2 34 216 0 5 1678 294 219 16 0 chr4 143377652 143377716 -12252404 + PB1D9 SINE Alu 1 65 -55 5 1678 1072 184 31 148 chr4 143378118 143378476 -12251644 + RLTRETN_Mm LTR ERVK 7 322 0 5 1678 234 0 0 0 chr4 143378488 143378514 -12251606 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 5 1678 400 261 0 0 chr4 143378826 143378918 -12251202 - ORR1A2 LTR MaLR -182 145 54 5 1678 279 316 0 37 chr4 143378941 143379023 -12251097 - B1_Mus1 SINE Alu -61 87 9 5 1678 3150 180 7 2 chr4 143379487 143380101 -12250019 - Lx3C LINE L1 -1045 5931 5319 5 1678 1234 225 136 15 chr4 143380088 143380418 -12249702 + Lx3C LINE L1 6607 6976 0 5 1678 247 269 0 0 chr4 143380419 143380471 -12249649 - PB1D9 SINE Alu -37 83 32 5 1678 903 201 5 36 chr4 143380798 143380994 -12249126 + B2_Mm2 SINE B2 1 190 -5 5 1678 603 0 0 0 chr4 143381090 143381157 -12248963 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1678 315 0 0 0 chr4 143381157 143381191 -12248929 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1678 263 197 40 0 chr4 143381203 143381279 -12248841 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 5 1678 444 277 0 69 chr4 143382303 143382462 -12247658 + B1_Mur2 SINE Alu 2 149 0 5 1678 9976 111 22 16 chr4 143385779 143387997 -12242123 + L1Md_F3 LINE L1 404 2638 -3245 5 1678 7172 55 3 0 chr4 143387988 143388863 -12241257 - L1Md_F2 LINE L1 0 6582 5705 5 1678 5677 48 1 0 chr4 143388862 143389591 -12240529 + L1Md_F2 LINE L1 4982 5711 -172 5 1678 21067 73 4 1 chr4 143389586 143392543 -12237577 + L1Md_F3 LINE L1 2618 5585 -298 5 209 7866 49 2 2 chr4 143392544 143393528 -12236592 + L1Md_F3 LINE L1 5587 6570 -14 5 1679 12306 80 1 2 chr4 143393538 143395288 -12234832 + L1Md_F2 LINE L1 3838 5585 -298 5 1679 6949 87 25 2 chr4 143395289 143396262 -12233858 + L1Md_F2 LINE L1 5587 6581 -1 5 1679 281 383 17 9 chr4 143397008 143397124 -12232996 + PB1D7 SINE Alu 1 117 -3 5 1679 189 107 0 0 chr4 143397607 143397635 -12232485 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 1679 302 331 37 8 chr4 143397637 143397771 -12232349 - B1_Mur2 SINE Alu -9 140 3 5 1679 2166 218 30 26 chr4 143398448 143398956 -12231164 + RLTR28 LTR ERVL 1 510 -14 5 1679 613 248 13 52 chr4 143402937 143403090 -12227030 - B1_Mur4 SINE Alu -1 149 3 5 1679 209 180 20 0 chr4 143404095 143404145 -12225975 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 5 1679 898 202 0 6 chr4 143404311 143404490 -12225630 - B2_Mm2 SINE B2 -17 178 1 5 1679 232 231 215 21 chr4 143404493 143404586 -12225534 - PB1D9 SINE Alu 0 120 10 5 1679 765 244 142 7 chr4 143404897 143405178 -12224942 - Lx3C LINE L1 -45 6931 6613 5 1679 2210 220 13 14 chr4 143405184 143405785 -12224335 + Lx3C LINE L1 5329 5934 -1042 5 1679 2311 204 59 8 chr4 143407554 143408043 -12222077 - RMER19A LTR ERVK -223 514 1 5 1679 367 269 48 0 chr4 143408043 143408132 -12221988 + B1_Mus2 SINE Alu 33 126 -21 5 1679 369 230 0 0 chr4 143408269 143408421 -12221699 + (TA)n Simple_repeat Simple_repeat 2 153 0 5 1679 250 337 95 26 chr4 143409301 143409490 -12220630 - B3 SINE B2 -3 213 12 5 1679 337 325 8 8 chr4 143409516 143409640 -12220480 - B1_Mur2 SINE Alu -5 144 21 5 1679 3175 126 91 31 chr4 143409649 143410229 -12219891 - RLTR13C1 LTR ERVK 0 983 369 5 1679 3704 18 0 0 chr4 143410249 143410694 -12219426 + L1Md_F2 LINE L1 5141 5585 -298 5 1679 7961 50 3 2 chr4 143410695 143411688 -12218432 + L1Md_F2 LINE L1 5587 6580 -2 5 1679 955 204 0 6 chr4 143411700 143411868 -12218252 - RLTR13C1 LTR ERVK -639 167 1 5 1679 340 367 8 0 chr4 143412579 143412707 -12217413 + ID_B1 SINE B4 93 221 -3 5 1679 207 260 28 46 chr4 143413819 143413866 -12216254 + T-rich Low_complexity Low_complexity 60 109 0 5 1679 620 213 49 21 chr4 143413866 143414010 -12216110 - B1_Mus1 SINE Alu 0 148 1 5 1679 207 260 28 46 chr4 143414010 143414071 -12216049 + T-rich Low_complexity Low_complexity 3 59 0 5 1679 253 321 26 62 chr4 143414336 143414361 -12215759 + B1F SINE Alu 1 109 -40 5 1679 300 247 34 80 chr4 143414361 143414449 -12215671 + ID_B1 SINE B4 104 187 -37 5 1679 7417 93 2 0 chr4 143414589 143415633 -12214487 + L1VL1 LINE L1 1 1046 -5376 5 1679 8909 119 186 1 chr4 143415638 143416736 -12213384 + L1_Mus1 LINE L1 2904 4284 -1599 5 1679 432 0 0 0 chr4 143416736 143416784 -12213336 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 1679 8909 119 186 1 chr4 143416784 143417394 -12212726 + L1_Mus1 LINE L1 4285 4926 -957 5 1679 31096 71 4 3 chr4 143417397 143422597 -12207523 + L1Md_F2 LINE L1 285 5588 -298 5 1679 7783 59 1 2 chr4 143422598 143423581 -12206539 + L1Md_F2 LINE L1 5590 6571 -14 5 1679 6911 87 6 4 chr4 143423591 143425238 -12204882 + L1_Mus1 LINE L1 4913 6564 -3 5 1679 291 346 0 0 chr4 143425280 143425393 -12204727 + B1F2 SINE Alu 1 113 -36 5 1679 816 296 111 0 chr4 143425566 143425819 -12204301 - RLTR33 LTR ERVK -61 617 337 5 1679 3883 155 5 28 chr4 143425833 143426070 -12204050 - L1_Mur2 LINE L1 -997 4880 4664 5 1679 6093 74 4 28 chr4 143426070 143426893 -12203227 - RLTR13B4 LTR ERVK 0 803 1 5 1679 3883 155 5 28 chr4 143426893 143427449 -12202671 - L1_Mur2 LINE L1 -1214 4663 4105 5 1679 1704 252 90 18 chr4 143427481 143428102 -12202018 - Lx2B LINE L1 -35 7023 6265 5 1679 5583 204 26 12 chr4 143428102 143429288 -12200832 + RLTR19-int LTR ERVK 4060 5262 -875 5 1679 515 291 84 56 chr4 143429303 143429577 -12200543 + RLTR20C LTR ERVK 1 304 -274 5 1679 1418 199 39 27 chr4 143429583 143429919 -12200201 + Lx4A LINE L1 6716 7055 -3 5 1679 495 230 71 7 chr4 143430075 143430215 -12199905 - B1_Mur2 SINE Alu 0 149 1 5 1679 373 224 23 12 chr4 143430421 143430507 -12199613 + PB1D9 SINE Alu 34 120 0 5 1679 393 117 0 0 chr4 143430510 143430570 -12199550 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1679 334 229 84 14 chr4 143430842 143430955 -12199165 + B1_Mus1 SINE Alu 2 113 -34 5 1679 629 182 0 14 chr4 143431039 143431178 -12198942 + L1_Mur2 LINE L1 2324 2460 -3417 5 1679 401 114 24 48 chr4 143431189 143431272 -12198848 + B1_Mur2 SINE Alu 68 148 -1 5 1679 325 300 9 52 chr4 143431477 143431593 -12198527 - PB1D7 SINE Alu -9 111 1 5 1679 484 312 7 0 chr4 143432441 143432582 -12197538 + B1_Mur2 SINE Alu 1 142 -7 6 1679 363 336 18 0 chr4 143432699 143432812 -12197308 + B1_Mur1 SINE Alu 22 136 -13 6 1679 419 297 68 79 chr4 143432831 143433021 -12197099 + B3A SINE B2 8 195 -3 6 1679 465 229 21 0 chr4 143433306 143433402 -12196718 - B1_Mus2 SINE Alu -14 133 36 6 1679 2631 159 16 108 chr4 143433403 143433967 -12196153 + RMER19A LTR ERVK 3 514 -223 6 1679 4501 144 39 90 chr4 143434172 143435120 -12195000 + RLTR13D6 LTR ERVK 1 900 -2 6 1679 348 268 0 35 chr4 143436094 143436179 -12193941 - B1_Mus1 SINE Alu -58 90 9 6 1679 1065 96 7 0 chr4 143436552 143436698 -12193422 - B1_Mus1 SINE Alu 0 148 2 6 1679 1274 73 0 11 chr4 143436742 143436922 -12193198 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 6 1679 2631 204 10 2 chr4 143436961 143437564 -12192556 - Lx3C LINE L1 -1042 5934 5330 6 1679 1000 221 111 51 chr4 143437561 143437913 -12192207 + Lx3C LINE L1 6604 6976 0 6 1679 1348 46 0 22 chr4 143438100 143438260 -12191860 + B2_Mm1a SINE B2 1 160 -33 6 1679 207 0 0 0 chr4 143438260 143438283 -12191837 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1679 1348 46 0 22 chr4 143438283 143438300 -12191820 + B2_Mm1a SINE B2 161 174 -19 6 1679 223 269 151 19 chr4 143438396 143438502 -12191618 + PB1D9 SINE Alu 1 120 0 6 1679 2339 104 6 9 chr4 143438504 143438852 -12191268 + L1_Mus1 LINE L1 6221 6567 0 6 1679 992 175 0 6 chr4 143438873 143439051 -12191069 + B2_Mm2 SINE B2 1 177 -18 6 1679 266 253 12 0 chr4 143439178 143439261 -12190859 + (TATG)n Simple_repeat Simple_repeat 1 84 0 6 1679 314 288 98 41 chr4 143439318 143439441 -12190679 + B1_Mur2 SINE Alu 20 149 0 6 1679 250 257 86 95 chr4 143440270 143440282 -12189838 + MT2B LTR ERVL 143 153 -448 6 1679 630 272 7 52 chr4 143440282 143440437 -12189683 + B1_Mur4 SINE Alu 2 149 -1 6 1679 226 238 0 16 chr4 143442029 143442093 -12188027 + T-rich Low_complexity Low_complexity 2 64 0 6 1679 1310 130 5 0 chr4 143443546 143443730 -12186390 - B2_Mm1t SINE B2 -8 185 1 6 1679 1950 233 38 30 chr4 143444710 143445210 -12184910 - RLTR28 LTR ERVL -20 504 1 6 1679 257 290 0 14 chr4 143445211 143445281 -12184839 + PB1D7 SINE Alu 47 115 -5 6 1679 347 295 53 9 chr4 143445887 143446000 -12184120 + B1F2 SINE Alu 23 140 -9 6 1679 1948 52 162 0 chr4 143446495 143446767 -12183353 + LTRIS2 LTR ERV1 1 316 -248 6 1679 7510 76 11 0 chr4 143447224 143448733 -12181387 - L1Md_F2 LINE L1 -12 6570 5045 6 1679 4250 34 23 0 chr4 143448733 143449204 -12180916 + LTRIS_Mm LTR ERV1 1 482 0 6 1679 8322 65 29 8 chr4 143449204 143450489 -12179631 + MuRRS-int LTR ERV1 1 1543 -3147 6 1679 16272 62 24 34 chr4 143450479 143452633 -12177487 + MuRRS-int LTR ERV1 2558 4690 0 6 1679 4485 27 2 0 chr4 143452633 143453114 -12177006 + LTRIS_Mm LTR ERV1 1 482 0 6 1679 10152 85 0 54 chr4 143453114 143454623 -12175497 - L1Md_F2 LINE L1 -835 5048 3621 6 1679 1910 74 7 29 chr4 143454623 143454900 -12175220 + LTRIS2 LTR ERV1 294 564 0 6 1679 4545 144 18 15 chr4 143455528 143456263 -12173857 + RMER16-int LTR ERVK 703 1439 -3967 6 1679 7291 195 53 37 chr4 143456259 143457360 -12172760 + RLTR1B-int LTR ERV1 760 1847 -3216 6 1679 1228 128 32 11 chr4 143457360 143457549 -12172571 + B2_Mm1a SINE B2 1 193 0 6 1679 7291 140 44 29 chr4 143457549 143459616 -12170504 + RLTR1B-int LTR ERV1 1400 4271 -792 6 1679 970 232 26 0 chr4 143459607 143459835 -12170285 + RLTR1B-int LTR ERV1 4788 5021 -42 6 1679 4241 62 86 6 chr4 143459836 143460358 -12169762 + LTRIS2 LTR ERV1 1 564 0 6 1679 244 336 8 57 chr4 143460385 143460508 -12169612 - PB1D7 SINE Alu -3 117 1 6 1679 228 184 0 0 chr4 143460715 143460753 -12169367 + PB1 SINE Alu 36 73 -54 6 1679 438 347 7 7 chr4 143460816 143460961 -12169159 + ID_B1 SINE B4 50 194 -30 6 1679 2202 159 102 5 chr4 143460963 143461355 -12168765 + RLTR9B LTR ERVK 8 437 0 6 1679 28935 135 22 4 chr4 143461447 143466768 -12163352 + L1_Mus2 LINE L1 329 5747 -136 6 1679 773 132 0 0 chr4 143466777 143466898 -12163222 - L1_Mm LINE L1 -1228 4655 4535 6 1679 5860 112 6 2 chr4 143466897 143467726 -12162394 + L1_Mus2 LINE L1 5733 6564 -2 6 1679 5941 95 5 0 chr4 143467738 143468518 -12161602 + L1_Mus2 LINE L1 5783 6566 0 6 1679 20003 137 21 3 chr4 143468557 143469292 -12160828 + L1_Mus1 LINE L1 2551 3304 -2579 6 1679 225 0 0 0 chr4 143469292 143469317 -12160803 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1679 20003 137 21 3 chr4 143469317 143471817 -12158303 + L1_Mus1 LINE L1 3305 5845 -38 6 1679 31642 119 12 24 chr4 143471804 143478335 -12151785 + L1_Mus1 LINE L1 217 6567 0 6 1679 4380 112 150 8 chr4 143478335 143479088 -12151032 + L1_Mus3 LINE L1 5779 6638 0 6 1679 491 293 37 8 chr4 143479130 143479264 -12150856 + B1_Mur2 SINE Alu 3 140 -9 6 1679 221 323 0 0 chr4 143480222 143480288 -12149832 + PB1 SINE Alu 20 84 -230 6 1679 302 368 0 0 chr4 143480348 143480462 -12149658 + ID_B1 SINE B4 106 219 -5 6 1679 6872 152 14 5 chr4 143480631 143482140 -12147980 + L1_Mus4 LINE L1 5208 6636 0 6 1679 836 255 10 34 chr4 143482256 143482548 -12147572 + L1_Mur3 LINE L1 1639 1923 -3957 6 1679 435 250 32 0 chr4 143482550 143482674 -12147446 - Lx2B LINE L1 -2 6998 6871 6 1679 363 250 88 18 chr4 143482717 143482831 -12147289 + B1_Mm SINE Alu 6 127 -20 6 1679 218 264 0 0 chr4 143482847 143482900 -12147220 + GA-rich Low_complexity Low_complexity 2 54 0 6 1679 2713 179 43 32 chr4 143483088 143483641 -12146479 + RLTR31_Mm LTR ERVK 3 561 0 6 1679 424 298 99 0 chr4 143483925 143484056 -12146064 - B3 SINE B2 -67 149 6 6 1679 2105 156 83 8 chr4 143484398 143484773 -12145347 + RLTR9D LTR ERVK 1 403 0 6 1679 1473 237 56 9 chr4 143488273 143488756 -12141364 + L1_Mur2 LINE L1 21 419 -6293 6 1679 1809 171 64 3 chr4 143488751 143489143 -12140977 + Lx4A LINE L1 5619 6034 -1024 6 1679 2382 238 45 11 chr4 143489137 143489744 -12140376 + Lx4A LINE L1 6391 7017 -41 6 1679 281 312 35 18 chr4 143489991 143490105 -12140015 + ID_B1 SINE B4 107 222 -2 6 1679 403 141 20 20 chr4 143490725 143490826 -12139294 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 6 1679 340 308 30 8 chr4 143491103 143491237 -12138883 + B1_Mur1 SINE Alu 12 148 -1 6 1679 1140 85 7 0 chr4 143491260 143491401 -12138719 + B1_Mus1 SINE Alu 1 142 -6 6 1679 216 0 0 0 chr4 143491402 143491426 -12138694 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 6 1679 1014 120 11 6 chr4 143491427 143491603 -12138517 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 6 1679 251 113 0 19 chr4 143491603 143491657 -12138463 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 6 1679 213 163 116 0 chr4 143492202 143492245 -12137875 + B1F SINE Alu 16 63 -86 6 1679 234 298 0 0 chr4 143492215 143492272 -12137848 + 7SLRNA srpRNA srpRNA 34 90 -224 6 1679 186 138 52 0 chr4 143492388 143492446 -12137674 + CT-rich Low_complexity Low_complexity 2 62 0 6 1679 1402 174 17 0 chr4 143492456 143492697 -12137423 + RMER17B LTR ERVK 710 954 -4 6 1679 266 260 0 52 chr4 143492697 143492774 -12137346 - L1_Mur1 LINE L1 -274 5612 5540 6 1679 407 321 7 7 chr4 143492908 143493046 -12137074 + B1_Mur2 SINE Alu 2 139 -10 6 1679 470 46 0 15 chr4 143494400 143494466 -12135654 + (TCTCCC)n Simple_repeat Simple_repeat 3 67 0 6 1679 489 34 0 0 chr4 143494467 143494526 -12135594 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1679 621 243 53 0 chr4 143494527 143494679 -12135441 + RMER2 LTR ERV1 408 567 0 6 1679 2977 220 49 8 chr4 143494737 143495453 -12134667 + RMER6A LTR ERVK 1 745 -11 6 1679 703 154 51 0 chr4 143495459 143495615 -12134505 + L1_Mur3 LINE L1 2558 2721 -3159 6 1679 20002 146 7 15 chr4 143495591 143495886 -12134234 + L1_Mm LINE L1 2524 2820 -3063 6 1679 3628 39 136 2 chr4 143495886 143496320 -12133800 + MT2_Mm LTR ERVL 1 492 -1 6 1679 20002 146 7 15 chr4 143496320 143499414 -12130706 + L1_Mm LINE L1 2821 5883 0 6 1679 282 247 13 27 chr4 143500072 143500147 -12129973 - B1_Mus1 SINE Alu -66 82 9 1 1679 2630 207 30 4 chr4 143500507 143501161 -12128959 - Lx3C LINE L1 -602 5980 5319 2 1679 1179 217 143 9 chr4 143501160 143501481 -12128639 + Lx3C LINE L1 6613 6976 0 3 1679 221 235 73 0 chr4 143501630 143501698 -12128422 - B1F SINE Alu 0 149 77 4 1679 959 157 13 0 chr4 143501863 143502022 -12128098 + B2_Mm2 SINE B2 1 161 -34 5 1679 243 0 0 0 chr4 143502022 143502049 -12128071 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 1679 612 255 120 40 chr4 143502049 143502089 -12128031 + B3 SINE B2 182 215 -1 7 1679 284 221 13 0 chr4 143502150 143502227 -12127893 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 8 1679 322 298 115 8 chr4 143502278 143502400 -12127720 + B1_Mur2 SINE Alu 15 149 0 9 1679 1141 90 7 0 chr4 143503010 143503155 -12126965 - B1_Mus2 SINE Alu 0 147 2 1 1679 588 256 31 0 chr4 143503437 143503566 -12126554 + B1_Mur4 SINE Alu 3 135 -15 1 1679 186 43 0 0 chr4 143505213 143505236 -12124884 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1679 7430 97 56 9 chr4 143507208 143508231 -12121889 + L1_Mus2 LINE L1 4976 6086 -480 1 1679 2041 131 98 89 chr4 143508231 143508702 -12121418 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1679 7430 74 6 17 chr4 143508702 143509197 -12120923 + L1_Mus2 LINE L1 6087 6566 0 1 1679 1122 109 0 7 chr4 143509344 143509491 -12120629 - B1_Mm SINE Alu -1 146 1 1 1679 189 107 0 0 chr4 143509565 143509593 -12120527 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1679 1673 241 47 58 chr4 143509737 143510253 -12119867 - RLTR28 LTR ERVL -14 510 1 1 1679 486 294 35 14 chr4 143510950 143511083 -12119037 + B1_Mur2 SINE Alu 2 138 -11 1 1679 228 35 0 0 chr4 143511083 143511112 -12119008 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1679 486 294 35 14 chr4 143511112 143511123 -12118997 + B1_Mur2 SINE Alu 139 149 0 1 1679 14192 61 11 2 chr4 143511619 143514183 -12115937 - L1Md_F2 LINE L1 -1 6581 3991 2 1679 265 200 0 0 chr4 143514183 143514238 -12115882 + RMER4B LTR ERVK 531 585 0 2 1679 7650 79 7 5 chr4 143515563 143516652 -12113468 + L1Md_F LINE L1 235 1330 -5394 2 1679 400 267 51 22 chr4 143516861 143516999 -12113121 + B4A SINE B4 150 291 -1 2 1679 939 97 95 22 chr4 143517046 143517183 -12112937 + B1_Mus2 SINE Alu 1 147 0 2 1679 207 0 0 0 chr4 143517183 143517206 -12112914 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1679 249 217 0 21 chr4 143517247 143517294 -12112826 + PB1D10 SINE Alu 47 92 -25 2 1679 399 282 8 57 chr4 143517667 143517791 -12112329 - RSINE1 SINE B4 -38 127 10 2 1679 289 330 56 11 chr4 143518076 143518165 -12111955 + PB1D10 SINE Alu 1 93 -24 2 1679 597 277 15 0 chr4 143521037 143521174 -12108946 + B1_Mur4 SINE Alu 5 143 -7 2 1679 1214 90 6 0 chr4 143521182 143521360 -12108760 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1679 2644 98 6 3 chr4 143521722 143522080 -12108040 + L1_Mus3 LINE L1 6275 6633 -5 3 1679 259 337 94 19 chr4 143522142 143522248 -12107872 + B1F SINE Alu 2 115 -34 3 1679 934 180 81 0 chr4 143522324 143522496 -12107624 - MT2B LTR ERVL -384 217 32 3 1679 3054 196 86 26 chr4 143522343 143522651 -12107469 - ORR1A2-int LTR MaLR -1201 762 435 3 1679 441 0 0 0 chr4 143522651 143522700 -12107420 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1679 3054 196 86 26 chr4 143522700 143523109 -12107011 - ORR1A2-int LTR MaLR -1529 434 4 3 1679 1369 177 31 13 chr4 143523121 143523396 -12106724 - ORR1A2 LTR MaLR -14 313 3 3 1679 1180 79 0 0 chr4 143523549 143523689 -12106431 - B1_Mm SINE Alu -7 140 1 3 1679 306 0 0 0 chr4 143523751 143523785 -12106335 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1680 231 274 51 64 chr4 143524049 143524127 -12105993 + PB1D10 SINE Alu 37 113 -4 3 1680 1380 144 0 0 chr4 143524571 143524766 -12105354 + B2_Mm2 SINE B2 1 195 0 3 1680 376 340 20 0 chr4 143525074 143525174 -12104946 - B1_Mur2 SINE Alu -47 102 1 4 1680 962 201 50 10 chr4 143525552 143525753 -12104367 + ORR1A3-int LTR MaLR 341 549 -1414 4 1680 287 259 8 164 chr4 143525720 143525854 -12104266 + RLTR25A LTR ERVK 464 576 -527 4 1680 486 188 0 12 chr4 143525769 143525855 -12104265 + MT2B LTR ERVL 175 259 -342 4 1680 298 263 121 0 chr4 143525855 143525866 -12104254 + PB1D9 SINE Alu 11 119 -1 4 1680 367 287 83 0 chr4 143525896 143526004 -12104116 + B1_Mus1 SINE Alu 11 127 -21 4 1680 353 217 19 0 chr4 143525937 143526043 -12104077 + ORR1A3-int LTR MaLR 781 888 -1075 4 1680 3569 158 27 0 chr4 143526043 143526595 -12103525 + RMER2 LTR ERV1 1 567 0 4 1680 10865 60 2 0 chr4 143527279 143529333 -12100787 - L1Md_F2 LINE L1 -1 6581 4524 4 1680 31597 83 4 7 chr4 143529398 143533046 -12097074 + L1Md_F2 LINE L1 585 4208 -1675 4 1680 378 0 0 0 chr4 143533046 143533088 -12097032 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1680 31597 87 5 7 chr4 143533088 143534453 -12095667 + L1Md_F2 LINE L1 4209 5585 -298 4 1680 7965 64 16 7 chr4 143534454 143535441 -12094679 + L1Md_F2 LINE L1 5587 6582 0 4 1680 402 62 0 0 chr4 143535498 143535563 -12094557 - B2_Mm1a SINE B2 -2 191 127 5 1680 1031 141 0 18 chr4 143535601 143535767 -12094353 - B2_Mm2 SINE B2 -20 175 13 5 1680 287 179 54 0 chr4 143535769 143535825 -12094295 - PB1D9 SINE Alu -49 71 13 5 1680 238 300 26 79 chr4 143535825 143535845 -12094275 - MT2B LTR ERVL -375 226 155 5 1680 319 234 0 0 chr4 143535918 143535982 -12094138 - PB1 SINE Alu -63 64 1 5 1680 542 248 0 25 chr4 143536034 143536154 -12093966 - PB1D10 SINE Alu 0 117 1 5 1680 1231 55 0 7 chr4 143536202 143536350 -12093770 - B1_Mus2 SINE Alu 0 147 1 5 1680 420 254 54 23 chr4 143536758 143536887 -12093233 + B4A SINE B4 159 291 -1 5 1680 991 113 0 27 chr4 143536934 143537075 -12093045 + B1_Mus2 SINE Alu 1 138 -9 5 1680 207 0 0 0 chr4 143537075 143537098 -12093022 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1680 2701 74 3 0 chr4 143537165 143537490 -12092630 + IAPLTR3 LTR ERVK 1 326 0 6 1680 245 281 0 15 chr4 143537660 143537725 -12092395 - B3A SINE B2 -134 64 1 6 1680 445 271 8 54 chr4 143537897 143538026 -12092094 - RSINE1 SINE B4 -33 132 10 6 1680 276 333 62 0 chr4 143538311 143538392 -12091728 + PB1D10 SINE Alu 1 86 -31 6 1680 605 285 0 0 chr4 143541269 143541406 -12088714 + B1_Mus1 SINE Alu 5 141 -7 6 1680 807 105 0 0 chr4 143541410 143541534 -12088586 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 6 1680 2660 100 6 6 chr4 143541896 143542257 -12087863 + L1_Mus3 LINE L1 6275 6635 -3 6 1680 240 331 136 35 chr4 143542257 143542322 -12087798 + ID_B1 SINE B4 8 188 -31 6 1680 257 306 101 10 chr4 143542322 143542421 -12087699 + B1F1 SINE Alu 4 111 -38 6 1680 3049 188 92 39 chr4 143542518 143542832 -12087288 - ORR1A2-int LTR MaLR -1198 765 435 6 1680 678 58 0 0 chr4 143542832 143542919 -12087201 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 1680 3049 188 92 39 chr4 143542919 143543329 -12086791 - ORR1A2-int LTR MaLR -1529 434 4 6 1680 1337 172 31 13 chr4 143543341 143543616 -12086504 - ORR1A2 LTR MaLR -14 313 3 6 1680 1081 99 0 27 chr4 143543772 143543918 -12086202 - B1_Mm SINE Alu -5 142 1 7 1680 186 71 0 0 chr4 143543981 143544009 -12086111 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1680 180 111 0 0 chr4 143544421 143544448 -12085672 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 7 1680 1435 133 0 0 chr4 143544794 143544989 -12085131 + B2_Mm2 SINE B2 1 195 0 7 1680 376 340 20 0 chr4 143545297 143545397 -12084723 - B1_Mur2 SINE Alu -47 102 1 7 1680 1017 158 81 29 chr4 143545775 143546020 -12084100 + ORR1A3-int LTR MaLR 341 605 -1187 7 1680 487 176 0 12 chr4 143545992 143546078 -12084042 + MT2B LTR ERVL 175 259 -342 7 1680 300 229 177 48 chr4 143546078 143546115 -12084005 + B1_Mur3 SINE Alu 11 149 0 7 1680 271 254 57 113 chr4 143546119 143546243 -12083877 + MT2B LTR ERVL 155 271 -330 7 1680 360 278 102 0 chr4 143546138 143546246 -12083874 + B1_Mur2 SINE Alu 10 128 -21 8 1680 365 208 19 0 chr4 143546179 143546285 -12083835 + ORR1A3-int LTR MaLR 781 888 -1075 7 1680 3592 141 35 2 chr4 143546285 143546834 -12083286 + RMER2 LTR ERV1 1 567 0 8 1680 3977 111 0 0 chr4 143547576 143548126 -12081994 + L1Md_F2 LINE L1 386 935 -5681 8 1680 16665 88 6 5 chr4 143548124 143549474 -12080646 + L1Md_F2 LINE L1 3298 4648 -1235 8 1680 4235 47 14 0 chr4 143549474 143549960 -12080160 - MT2_Mm LTR ERVL 0 493 1 8 1680 16665 88 6 5 chr4 143549960 143550895 -12079225 + L1Md_F2 LINE L1 4649 5586 -297 8 1680 8012 70 4 7 chr4 143550895 143551894 -12078226 + L1Md_F2 LINE L1 5587 6582 0 8 1680 392 51 0 0 chr4 143551959 143552018 -12078102 - B2_Mm1a SINE B2 -8 185 127 8 1680 1097 122 6 0 chr4 143552058 143552222 -12077898 - B2_Mm2 SINE B2 -18 177 13 8 1680 300 212 61 0 chr4 143552224 143552290 -12077830 - PB1D9 SINE Alu -49 71 2 8 1680 333 234 0 0 chr4 143552373 143552437 -12077683 - PB1 SINE Alu -63 64 1 8 1680 587 222 0 25 chr4 143552489 143552609 -12077511 - PB1D10 SINE Alu 0 117 1 8 1680 377 178 174 22 chr4 143553066 143553158 -12076962 + B4A SINE B4 171 276 -16 8 1680 954 75 103 22 chr4 143553233 143553369 -12076751 + B1_Mus2 SINE Alu 1 147 0 9 1680 265 288 0 81 chr4 143553413 143553500 -12076620 + PB1D10 SINE Alu 37 116 -1 9 1680 245 281 0 15 chr4 143553601 143553666 -12076454 - B3A SINE B2 -134 64 1 9 1680 371 291 8 57 chr4 143553842 143553966 -12076154 - RSINE1 SINE B4 -38 127 10 9 1680 235 367 63 0 chr4 143554252 143554331 -12075789 + PB1D10 SINE Alu 3 86 -31 9 1680 2129 70 77 0 chr4 143556911 143557197 -12072923 + L1_Mm LINE L1 4482 4789 -1094 9 1680 2721 48 3 0 chr4 143557197 143557530 -12072590 + L1Md_A LINE L1 6249 6582 0 9 1680 21 0 0 0 chr4 143557564 143557585 -12072535 + AT_rich Low_complexity Low_complexity 1 21 0 9 1680 341 133 0 32 chr4 143557585 143557647 -12072473 - ORR1A4 LTR MaLR -269 60 1 9 1680 2658 65 17 14 chr4 143558832 143559177 -12070943 - ORR1A1 LTR MaLR 0 346 1 9 1680 417 20 0 0 chr4 143559765 143559815 -12070305 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1680 243 114 0 132 chr4 143559819 143559858 -12070262 + A-rich Low_complexity Low_complexity 4 38 0 1 1680 1097 99 0 0 chr4 143559858 143560000 -12070120 + B1_Mus1 SINE Alu 1 142 -6 1 1680 243 114 0 132 chr4 143560000 143560051 -12070069 + A-rich Low_complexity Low_complexity 39 82 0 1 1680 198 118 0 0 chr4 143560433 143560467 -12069653 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1680 25 31 0 0 chr4 143560669 143560701 -12069419 + AT_rich Low_complexity Low_complexity 1 32 0 1 1680 341 268 0 23 chr4 143560732 143560820 -12069300 - PB1D10 SINE Alu -9 108 23 1 1680 3441 148 17 99 chr4 143561312 143561806 -12068314 + Lx4B LINE L1 4815 5295 -582 1 1680 1207 54 0 0 chr4 143561806 143561953 -12068167 + B1_Mm SINE Alu 1 147 0 1 1680 3441 148 17 99 chr4 143561953 143562228 -12067892 + Lx4B LINE L1 5296 5521 -356 1 1680 1489 73 9 0 chr4 143562647 143562866 -12067254 - RLTR22_Mur LTR ERVK -1036 812 592 1 1680 424 86 0 0 chr4 143562866 143562923 -12067197 + B2_Mm2 SINE B2 3 59 -136 1 1680 1991 68 43 3 chr4 143562923 143563233 -12066887 + IAPLTR2b LTR ERVK 1 324 -13 1 1680 760 101 101 0 chr4 143563241 143563370 -12066750 + B2_Mm2 SINE B2 54 195 0 1 1680 3308 99 35 70 chr4 143563367 143563661 -12066459 - RLTR22_Mur LTR ERVK -1242 606 308 1 1680 1171 42 0 14 chr4 143563661 143563805 -12066315 + B1_Mus2 SINE Alu 3 144 -3 1 1680 3308 99 35 70 chr4 143563805 143563858 -12066262 - RLTR22_Mur LTR ERVK -1541 307 277 1 1680 1310 87 32 5 chr4 143563858 143564043 -12066077 + B2_Mm2 SINE B2 1 190 -5 1 1680 3308 99 35 70 chr4 143564043 143564322 -12065798 - RLTR22_Mur LTR ERVK -1572 276 1 1 1680 3500 159 41 3 chr4 143564322 143565012 -12065108 + Lx4B LINE L1 5515 6236 -822 1 1680 689 288 91 0 chr4 143565010 143565253 -12064867 + Lx3C LINE L1 6710 6974 -2 1 1680 282 322 0 0 chr4 143565270 143565357 -12064763 + ID_B1 SINE B4 123 209 -15 1 1680 387 123 15 0 chr4 143565374 143565439 -12064681 + B2_Mm1t SINE B2 1 66 -127 1 1680 3317 40 92 136 chr4 143565435 143566046 -12064074 - RLTR6_Mm LTR ERV1 -70 584 1 1 1680 19661 119 59 65 chr4 143566046 143569747 -12060373 - MMVL30-int LTR ERV1 0 3698 21 1 1680 3433 44 89 132 chr4 143569747 143570378 -12059742 - RLTR6_Mm LTR ERV1 -50 604 1 1 1680 852 92 30 0 chr4 143570378 143570509 -12059611 + B2_Mm1t SINE B2 59 193 0 1 1680 524 270 36 0 chr4 143570607 143570744 -12059376 + B1_Mur2 SINE Alu 1 142 -7 1 1680 489 266 8 0 chr4 143570853 143570977 -12059143 + B1_Mur1 SINE Alu 19 143 -6 1 1680 507 269 28 28 chr4 143570984 143571129 -12058991 + B3A SINE B2 2 146 -52 1 1680 3721 9 33 0 chr4 143571164 143571590 -12058530 - MMVL30-int LTR ERV1 -3238 460 21 1 1680 2818 102 164 14 chr4 143571590 143572146 -12057974 - RLTR6_Mm LTR ERV1 -15 639 1 1 1680 1204 55 0 20 chr4 143572402 143572551 -12057569 + B1_Mm SINE Alu 1 146 -1 1 1680 836 244 20 20 chr4 143572573 143572774 -12057346 - B3 SINE B2 -14 202 2 1 1680 298 274 37 9 chr4 143573414 143573521 -12056599 - ID_B1 SINE B4 -11 213 104 1 1680 2661 90 19 43 chr4 143573861 143574280 -12055840 - IAPLTR2a LTR ERVK -2 409 1 1 1680 27729 17 1 3 chr4 143574280 143577363 -12052757 - IAPEz-int LTR ERVK 0 6481 3405 1 1680 6731 63 110 31 chr4 143577350 143578314 -12051806 - IAPEz-int LTR ERVK -5439 1042 3 1 1680 2661 90 19 43 chr4 143578314 143578733 -12051387 - IAPLTR2a LTR ERVK -2 409 1 1 1680 327 104 0 0 chr4 143579109 143579157 -12050963 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1680 664 69 19 19 chr4 143579157 143579261 -12050859 - PB1D9 SINE Alu 0 120 17 1 1680 205 191 0 0 chr4 143579488 143579530 -12050590 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1680 843 120 0 0 chr4 143579606 143579731 -12050389 + B1_Mus2 SINE Alu 2 126 -21 1 1680 404 0 0 38 chr4 143580008 143580061 -12050059 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 1 1680 542 192 64 0 chr4 143580061 143580186 -12049934 - B1_Mur4 SINE Alu -12 138 6 1 1680 288 0 0 0 chr4 143580802 143580834 -12049286 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1680 214 75 0 70 chr4 143580838 143580881 -12049239 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1680 1026 78 0 0 chr4 143580900 143581029 -12049091 - B1_Mus1 SINE Alu -18 130 2 1 1680 666 101 0 0 chr4 143582248 143582347 -12047773 + L1_Mus1 LINE L1 6458 6556 -11 1 1680 441 0 0 0 chr4 143582347 143582396 -12047724 + (TAA)n Simple_repeat Simple_repeat 3 51 0 1 1680 707 194 49 21 chr4 143583653 143583795 -12046325 - B1_Mus1 SINE Alu -1 147 2 1 1680 680 214 7 7 chr4 143584749 143584890 -12045230 - B1_Mm SINE Alu -6 141 1 1 1680 348 127 0 73 chr4 143585009 143585077 -12045043 - PB1D9 SINE Alu -1 119 57 1 1680 236 333 78 0 chr4 143585164 143585266 -12044854 + B1F2 SINE Alu 2 111 -38 1 1680 863 153 7 27 chr4 143585686 143585834 -12044286 + B1_Mus1 SINE Alu 1 145 -3 1 1680 562 250 87 20 chr4 143586158 143586354 -12043766 - B3 SINE B2 -6 210 2 1 1680 302 357 70 11 chr4 143586375 143586562 -12043558 + ID_B1 SINE B4 1 198 -26 1 1680 254 321 46 0 chr4 143586465 143586574 -12043546 + B1F SINE Alu 19 132 -17 1 1680 225 254 68 0 chr4 143586745 143586804 -12043316 + ID_B1 SINE B4 109 171 -53 1 1680 257 230 66 44 chr4 143587040 143587131 -12042989 + PB1D7 SINE Alu 27 119 -1 1 1680 235 304 39 31 chr4 143587164 143587293 -12042827 + B1F1 SINE Alu 10 139 -10 1 1680 189 196 0 0 chr4 143587733 143587779 -12042341 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 1680 229 318 47 0 chr4 143587799 143587906 -12042214 - PB1D7 SINE Alu -8 112 1 1 1680 1087 44 81 0 chr4 143587985 143588121 -12041999 + B1_Mm SINE Alu 1 147 0 1 1680 882 0 0 0 chr4 143588341 143588439 -12041681 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 1 1680 1282 87 23 0 chr4 143588439 143588611 -12041509 - B2_Mm2 SINE B2 -17 178 3 1 1680 328 269 139 51 chr4 143588772 143588909 -12041211 + B1_Mur1 SINE Alu 1 149 0 1 1680 236 313 12 12 chr4 143588953 143589037 -12041083 + RSINE1 SINE B4 9 92 -73 1 1680 778 38 9 0 chr4 143589134 143589239 -12040881 + B1_Mm SINE Alu 42 147 0 1 1680 257 0 30 0 chr4 143589243 143589276 -12040844 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1680 185 94 0 30 chr4 143589534 143589567 -12040553 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 1 1680 1754 213 93 31 chr4 143589851 143590369 -12039751 + Lx9 LINE L1 7038 7587 -57 1 1680 663 269 19 24 chr4 143590531 143590744 -12039376 - B3 SINE B2 0 216 5 1 1680 517 307 12 40 chr4 143590779 143590952 -12039168 - ID_B1 SINE B4 -31 193 26 1 1680 373 305 48 28 chr4 143591000 143591145 -12038975 - B1F SINE Alu 0 149 2 1 1680 939 118 0 0 chr4 143591204 143591348 -12038772 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 1 1680 1108 52 0 0 chr4 143591348 143591483 -12038637 - B1_Mm SINE Alu -12 135 1 1 1680 640 266 47 11 chr4 143591539 143591729 -12038391 + B3A SINE B2 20 216 0 1 1680 1617 52 0 0 chr4 143591761 143591954 -12038166 + B2_Mm1a SINE B2 1 193 0 1 1680 1130 82 0 0 chr4 143592104 143592251 -12037869 + B1_Mus2 SINE Alu 1 147 0 1 1680 195 42 0 0 chr4 143592251 143592275 -12037845 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1680 480 319 21 0 chr4 143592727 143592871 -12037249 + B1_Mur2 SINE Alu 3 149 0 1 1680 1172 64 0 0 chr4 143594146 143594303 -12035817 + B2_Mm2 SINE B2 4 160 -35 1 1680 284 287 35 0 chr4 143594576 143594663 -12035457 - PB1D9 SINE Alu 0 120 31 1 1680 886 143 119 0 chr4 143594697 143594865 -12035255 - B2_Mm2 SINE B2 -7 188 1 1 1680 624 177 86 65 chr4 143595026 143595165 -12034955 - B1_Mur4 SINE Alu -8 142 1 1 1680 721 174 76 58 chr4 143595590 143595761 -12034359 + RLTR18 LTR ERVK 5 178 -438 1 1680 1299 148 146 11 chr4 143595831 143596112 -12034008 + RLTR18 LTR ERVK 149 467 -149 1 1680 4540 10 0 0 chr4 143596115 143596608 -12033512 - MT2_Mm LTR ERVL 0 493 1 1 1680 321 0 0 0 chr4 143596608 143596646 -12033474 - MERVL-int LTR ERVL 0 5485 5448 1 1680 362 167 46 35 chr4 143596646 143596733 -12033387 - ORR1A3-int LTR MaLR -1323 640 553 1 1680 48523 14 6 0 chr4 143596733 143602059 -12028061 - MERVL-int LTR ERVL -125 5360 1 1 1680 4555 8 0 0 chr4 143602059 143602552 -12027568 - MT2_Mm LTR ERVL 0 493 1 1 1680 391 257 138 50 chr4 143602684 143602844 -12027276 + RLTR18-int LTR ERVK 3 176 -5185 1 1680 900 173 0 7 chr4 143602848 143602999 -12027121 + B1_Mur4 SINE Alu 1 150 0 1 1680 983 235 62 82 chr4 143603447 143603813 -12026307 + RLTR18-int LTR ERVK 2826 3373 -1988 1 1680 1534 59 11 0 chr4 143603813 143604000 -12026120 + B2_Mm1a SINE B2 1 189 -4 1 1680 1355 84 6 0 chr4 143604009 143604187 -12025933 - B2_Mm1a SINE B2 -14 179 1 1 1680 983 231 89 121 chr4 143604187 143604384 -12025736 + RLTR18-int LTR ERVK 3374 3573 -1788 1 1680 260 250 31 0 chr4 143604967 143605031 -12025089 + RLTR42-int LTR ERVK 1799 1864 -3658 1 1680 707 102 0 25 chr4 143605108 143605229 -12024891 + B1_Mus2 SINE Alu 30 147 0 1 1680 713 118 154 150 chr4 143605268 143605488 -12024632 + RLTR42-int LTR ERVK 2043 2263 -3259 1 1680 299 113 172 31 chr4 143605495 143605559 -12024561 - B2_Mm2 SINE B2 -107 88 16 1 1680 552 138 0 0 chr4 143605564 143605658 -12024462 + B2_Mm1t SINE B2 86 179 -14 1 1680 599 161 120 8 chr4 143606002 143606127 -12023993 - B1_Mus2 SINE Alu 0 147 9 1 1680 531 0 0 0 chr4 143606158 143606217 -12023903 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1680 528 170 70 18 chr4 143606218 143606332 -12023788 - B1_Mus2 SINE Alu -6 141 22 1 1680 612 244 123 17 chr4 143606338 143606517 -12023603 - B3 SINE B2 -18 198 1 1 1680 450 0 0 0 chr4 143607000 143607050 -12023070 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1680 760 242 0 0 chr4 143607532 143607681 -12022439 - B1_Mur2 SINE Alu 0 149 1 1 1680 896 65 177 0 chr4 143607927 143608051 -12022069 - B1_Mm SINE Alu -1 146 1 1 1680 4599 42 7 0 chr4 143608063 143608613 -12021507 - L1Md_F2 LINE L1 0 6582 6029 1 1680 1761 125 269 51 chr4 143608726 143609180 -12020940 + RLTR6_Mm LTR ERV1 37 589 -65 1 1680 53466 36 17 0 chr4 143609195 143616837 -12013283 + RLTR6-int LTR ERV1 1 7778 0 1 1680 1748 126 272 50 chr4 143616950 143617409 -12012711 + RLTR6_Mm LTR ERV1 37 597 -57 1 1680 288 81 0 0 chr4 143617409 143617446 -12012674 - L1Md_F2 LINE L1 -560 6022 5986 1 1680 3284 41 4 3 chr4 143617442 143617848 -12012272 + L1Md_F2 LINE L1 5586 5962 -620 1 1680 1323 86 32 0 chr4 143618099 143618285 -12011835 + B2_Mm1a SINE B2 1 192 -1 1 1680 344 101 0 42 chr4 143618371 143618443 -12011677 + (T)n Simple_repeat Simple_repeat 1 69 0 1 1680 1156 56 7 0 chr4 143618445 143618587 -12011533 - B1_Mus1 SINE Alu -1 147 5 1 1680 1051 97 0 40 chr4 143618616 143618766 -12011354 - B1_Mus1 SINE Alu 0 148 5 1 1680 596 335 72 26 chr4 143618911 143619057 -12011063 - MuLV-int LTR ERV1 -4612 3166 2910 1 1680 180 0 0 0 chr4 143619057 143619077 -12011043 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1680 596 341 62 26 chr4 143619077 143619385 -12010735 - MuLV-int LTR ERV1 -4697 2909 2642 1 1680 326 347 72 43 chr4 143619563 143619840 -12010280 - RLTR4_MM-int LTR ERV1 -5216 2385 2101 2 1680 1330 92 11 0 chr4 143620214 143620399 -12009721 - B2_Mm1t SINE B2 -5 188 2 2 1680 256 319 105 12 chr4 143620625 143620787 -12009333 - RLTR4_MM-int LTR ERV1 -6200 1578 1402 2 1680 186 43 0 0 chr4 143621391 143621414 -12008706 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 1680 1086 108 0 0 chr4 143621414 143621562 -12008558 - B1_Mus1 SINE Alu 0 148 1 2 1680 326 319 14 14 chr4 143622126 143622272 -12007848 + A-rich Low_complexity Low_complexity 1 146 0 2 1680 833 165 104 0 chr4 143622899 143623063 -12007057 - B2_Mm2 SINE B2 -14 181 1 2 1680 216 343 97 14 chr4 143623065 143623210 -12006910 - ID_B1 SINE B4 -4 220 64 2 1680 927 148 94 22 chr4 143625486 143625666 -12004454 + B2_Mm2 SINE B2 2 194 -1 2 1680 1054 92 7 7 chr4 143625669 143625811 -12004309 + B1_Mus1 SINE Alu 5 146 -2 2 1680 207 0 0 0 chr4 143625819 143625842 -12004278 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1680 1072 115 52 47 chr4 143626177 143626369 -12003751 - B2_Mm2 SINE B2 -1 194 2 2 1680 224 239 0 0 chr4 143626380 143626395 -12003725 + polypyrimidine Low_complexity Low_complexity 35 49 0 2 1680 1225 78 6 6 chr4 143626395 143626575 -12003545 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1680 224 239 0 0 chr4 143626575 143626605 -12003515 + polypyrimidine Low_complexity Low_complexity 5 34 0 2 1680 970 131 6 6 chr4 143626605 143626623 -12003497 + (TC)n Simple_repeat Simple_repeat 1 18 0 2 1680 1214 95 6 0 chr4 143626623 143626802 -12003318 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1680 970 131 6 6 chr4 143626802 143626952 -12003168 + (TC)n Simple_repeat Simple_repeat 2 152 0 2 1680 735 125 117 0 chr4 143626958 143627086 -12003034 - B1_Mus1 SINE Alu 0 148 6 2 1680 309 296 58 34 chr4 143627298 143627504 -12002616 - ID_B1 SINE B4 -9 215 5 2 1680 1046 244 142 47 chr4 143627982 143628321 -12001799 - RLTR33 LTR ERVK -133 545 175 2 1680 839 185 37 68 chr4 143628355 143628546 -12001574 + B2_Mm2 SINE B2 1 185 -10 2 1680 825 193 12 24 chr4 143628546 143628711 -12001409 + B2_Mm2 SINE B2 2 164 -31 2 1680 468 51 0 0 chr4 143628715 143628774 -12001346 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 2 1680 533 40 40 0 chr4 143628856 143628930 -12001190 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 2 1680 216 0 0 0 chr4 143629200 143629224 -12000896 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1680 212 175 0 0 chr4 143629375 143629415 -12000705 + T-rich Low_complexity Low_complexity 1 40 0 2 1680 1238 48 0 0 chr4 143630187 143630334 -11999786 - B1_Mus2 SINE Alu 0 147 1 2 1680 231 74 18 53 chr4 143630400 143630457 -11999663 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1680 1231 28 7 0 chr4 143630681 143630825 -11999295 + B1_Mus2 SINE Alu 1 145 -2 2 1680 580 71 24 0 chr4 143632382 143632467 -11997653 - B2_Mm2 SINE B2 -107 88 2 2 1680 317 216 40 0 chr4 143632723 143632797 -11997323 - PB1D9 SINE Alu -39 81 5 2 1680 1017 95 0 20 chr4 143632834 143632984 -11997136 + B1_Mus2 SINE Alu 1 147 0 2 1680 792 261 26 31 chr4 143633250 143633505 -11996615 - MYSERV-int LTR ERVK -4701 4258 3828 2 1680 1096 94 0 0 chr4 143633512 143633650 -11996470 - B1_Mus2 SINE Alu -5 142 5 2 1680 6030 80 11 18 chr4 143633713 143634221 -11995899 + RLTR13C2 LTR ERVK 1 508 -300 2 1680 1665 36 0 0 chr4 143634221 143634414 -11995706 - B2_Mm1a SINE B2 0 193 1 2 1680 6030 80 11 18 chr4 143634414 143634719 -11995401 + RLTR13C2 LTR ERVK 509 808 0 2 1680 4644 211 114 25 chr4 143634769 143635510 -11994610 - Lx5 LINE L1 -2 7048 6239 2 1680 1120 165 5 5 chr4 143635510 143635699 -11994421 + B2_Mm2 SINE B2 1 189 -6 2 1680 4644 211 114 25 chr4 143635699 143635757 -11994363 - Lx5 LINE L1 -812 6238 6192 2 1680 238 67 44 0 chr4 143635757 143635802 -11994318 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1680 1062 86 0 0 chr4 143635802 143635941 -11994179 - B1_Mm SINE Alu -8 139 1 2 1680 4644 211 114 25 chr4 143635941 143636265 -11993855 - Lx5 LINE L1 -859 6191 5824 2 1680 3485 215 42 65 chr4 143636271 143637151 -11992969 - RMER13A LTR ERVK 0 860 1 2 1680 291 28 0 0 chr4 143637368 143637404 -11992716 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1680 1022 129 0 0 chr4 143637551 143637698 -11992422 - B1_Mus1 SINE Alu 0 148 2 2 1680 591 62 0 0 chr4 143638326 143638406 -11991714 + (T)n Simple_repeat Simple_repeat 1 80 0 2 1680 1166 62 7 0 chr4 143638406 143638552 -11991568 - B1_Mus1 SINE Alu 0 148 2 2 1680 7066 96 2 36 chr4 143638598 143639317 -11990803 + L1_Mus1 LINE L1 5313 6005 -562 2 1680 1564 42 21 0 chr4 143639317 143639506 -11990614 + B2_Mm1a SINE B2 1 193 0 2 1680 7066 81 3 43 chr4 143639506 143640082 -11990038 + L1_Mus1 LINE L1 6006 6567 0 2 1680 29 28 0 0 chr4 143640195 143640231 -11989889 + AT_rich Low_complexity Low_complexity 1 36 0 2 1680 23 0 0 0 chr4 143640359 143640382 -11989738 + AT_rich Low_complexity Low_complexity 1 23 0 2 1680 349 293 26 39 chr4 143640387 143640618 -11989502 - RLTR15 LTR ERVK -83 276 49 2 1680 1175 62 0 0 chr4 143640637 143640781 -11989339 - B1_Mm SINE Alu -3 144 1 2 1680 1199 41 14 0 chr4 143640812 143640957 -11989163 + B1_Mus1 SINE Alu 2 148 0 2 1680 2179 88 71 76 chr4 143641084 143641451 -11988669 - RLTR8 LTR ERVK 0 365 1 2 1680 322 104 0 0 chr4 143641494 143641542 -11988578 - B1_Mus1 SINE Alu -100 48 1 2 1680 11094 135 10 1 chr4 143641576 143643215 -11986905 - MERVL-int LTR ERVL -133 5352 3698 2 1680 671 65 11 0 chr4 143643215 143643308 -11986812 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 2 1680 498 33 0 0 chr4 143643306 143643366 -11986754 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1680 3347 78 48 2 chr4 143643784 143644245 -11985875 + RLTR45 LTR ERVK 1 482 0 2 1680 589 246 35 7 chr4 143646008 143646286 -11983834 + RMER19B LTR ERVK 1 227 -675 2 1680 4936 133 11 15 chr4 143646329 143647139 -11982981 - L1_Mus4 LINE L1 -3 6633 5827 2 1680 480 281 50 0 chr4 143647174 143647313 -11982807 - B1_Mus1 SINE Alu -2 146 1 2 1680 1236 41 0 0 chr4 143647623 143647770 -11982350 - B1_Mus2 SINE Alu 0 147 1 2 1680 1304 246 92 5 chr4 143647772 143648185 -11981935 - RLTR11A2 LTR ERVK -78 449 1 2 1680 2562 227 93 64 chr4 143648635 143648739 -11981381 + RMER19B LTR ERVK 1 90 -812 2 1680 3640 81 13 0 chr4 143648739 143649208 -11980912 + MT2C_Mm LTR ERVL 1 475 0 2 1680 2562 227 93 64 chr4 143649208 143649932 -11980188 + RMER19B LTR ERVK 91 853 -49 2 1680 279 0 0 0 chr4 143649936 143649967 -11980153 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1680 262 200 250 10 chr4 143649995 143650091 -11980029 + B3 SINE B2 1 119 -97 2 1680 306 0 0 0 chr4 143650274 143650308 -11979812 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1680 213 39 0 0 chr4 143650358 143650384 -11979736 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1680 871 118 59 0 chr4 143651024 143651159 -11978961 - B1_Mus1 SINE Alu -5 143 1 2 1680 198 0 0 0 chr4 143651285 143651307 -11978813 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1680 304 327 53 53 chr4 143651481 143651624 -11978496 - B3 SINE B2 -35 181 36 2 1680 1116 69 0 7 chr4 143651624 143651770 -11978350 - B1_Mus2 SINE Alu -1 146 2 2 1680 304 327 53 53 chr4 143651770 143651797 -11978323 - B3 SINE B2 -181 35 11 2 1680 208 67 43 43 chr4 143651905 143651952 -11978168 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2 1680 870 105 14 43 chr4 143652131 143652270 -11977850 + B1_Mus1 SINE Alu 2 136 -12 2 1680 366 83 83 0 chr4 143652281 143652377 -11977743 + A-rich Low_complexity Low_complexity 2 105 0 2 1680 207 0 0 0 chr4 143652769 143652792 -11977328 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1680 5062 210 69 11 chr4 143653211 143654526 -11975594 - Lx4A LINE L1 -49 7009 5619 2 26 1348 266 39 0 chr4 143654521 143655006 -11975114 - Lx4A LINE L1 -6300 786 395 2 1681 1061 109 7 0 chr4 143655164 143655311 -11974809 + B1_Mus1 SINE Alu 1 148 0 2 1681 950 146 0 0 chr4 143656034 143656185 -11973935 - B2_Mm1t SINE B2 -6 187 37 2 1681 180 0 0 0 chr4 143657812 143657832 -11972288 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 1681 1444 94 0 0 chr4 143658423 143658615 -11971505 + B2_Mm1a SINE B2 2 193 0 2 1681 408 283 122 51 chr4 143659445 143659642 -11970478 + B3 SINE B2 6 216 0 2 1681 344 73 354 35 chr4 143660222 143660335 -11969785 - B2_Mm2 SINE B2 0 195 47 2 1681 1050 139 6 0 chr4 143660362 143660534 -11969586 - B2_Mm2 SINE B2 -22 173 1 2 1681 1108 83 0 0 chr4 143660641 143660785 -11969335 - B1_Mm SINE Alu -1 146 3 2 1681 1086 110 0 0 chr4 143660830 143660976 -11969144 - B1_Mm SINE Alu 0 147 2 2 1681 1516 151 18 81 chr4 143660976 143661308 -11968812 - L1_Mur2 LINE L1 -39 5838 5528 2 1681 3431 107 15 18 chr4 143661287 143661854 -11968266 - L1_Mus3 LINE L1 -534 6104 5539 2 1681 5302 154 25 3 chr4 143661857 143662819 -11967301 - L1_Mus3 LINE L1 -1419 4464 3482 2 1681 2481 73 3 3 chr4 143662832 143663160 -11966960 - L1_Mus1 LINE L1 0 6567 6240 2 1681 3422 87 2 17 chr4 143663160 143663642 -11966478 + L1_Mus2 LINE L1 5599 6073 -493 2 1681 895 122 0 75 chr4 143663655 143663814 -11966306 - B1_Mus2 SINE Alu 0 147 1 2 1681 1283 97 32 0 chr4 143664057 143664242 -11965878 + B2_Mm1a SINE B2 1 191 -2 2 1681 978 93 21 0 chr4 143664348 143664488 -11965632 - B1_Mus1 SINE Alu -1 147 5 2 1681 769 87 0 0 chr4 143664507 143664622 -11965498 - B1_Mm SINE Alu 0 147 33 2 1681 273 175 68 91 chr4 143664550 143664638 -11965482 - RLTR25B LTR ERVK -519 509 424 2 1681 1361 97 16 0 chr4 143664664 143664849 -11965271 - B2_Mm2 SINE B2 -5 190 3 2 1681 378 0 34 34 chr4 143664969 143665028 -11965092 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1681 864 140 7 0 chr4 143665028 143665164 -11964956 - B1_Mus2 SINE Alu -9 138 2 2 1681 1106 97 0 0 chr4 143665187 143665332 -11964788 - B1_Mm SINE Alu -1 146 2 2 1681 4184 190 7 46 chr4 143665332 143666231 -11963889 - L1_Mus3 LINE L1 -39 5838 4975 3 1681 7024 118 19 15 chr4 143666229 143667539 -11962581 - L1_Mus3 LINE L1 -2 6636 4347 3 1681 5306 154 25 3 chr4 143667542 143668504 -11961616 - L1_Mus3 LINE L1 -1419 4464 3482 3 1681 2437 71 12 3 chr4 143668518 143668843 -11961277 - L1_Mus1 LINE L1 0 6567 6240 3 1681 3427 87 2 17 chr4 143668843 143669325 -11960795 + L1_Mus2 LINE L1 5599 6073 -493 3 1681 853 116 0 99 chr4 143669337 143669499 -11960621 - B1_Mus2 SINE Alu -1 146 1 3 1681 1165 122 33 0 chr4 143669742 143669922 -11960198 + B2_Mm1a SINE B2 1 186 -7 3 1681 1046 71 21 0 chr4 143670027 143670167 -11959953 - B1_Mus1 SINE Alu -1 147 5 3 1681 797 54 0 9 chr4 143670186 143670298 -11959822 - B1_Mm SINE Alu 0 147 37 3 1681 290 162 69 81 chr4 143670230 143670317 -11959803 - RLTR25B LTR ERVK -519 509 424 3 1681 1371 105 16 0 chr4 143670339 143670530 -11959590 - B2_Mm2 SINE B2 -1 194 1 3 1681 487 0 16 16 chr4 143670648 143670712 -11959408 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1681 847 148 7 0 chr4 143670712 143670847 -11959273 - B1_Mus2 SINE Alu -10 137 2 3 1681 1131 90 0 0 chr4 143670870 143671015 -11959105 - B1_Mm SINE Alu -1 146 2 3 1681 2113 177 9 54 chr4 143671015 143671462 -11958658 - L1_Mur2 LINE L1 -39 5838 5412 3 1681 366 127 16 0 chr4 143671462 143671525 -11958595 - B1_Mus1 SINE Alu -84 64 1 3 1681 23 0 0 0 chr4 143671712 143671735 -11958385 + AT_rich Low_complexity Low_complexity 1 23 0 3 1681 920 117 14 0 chr4 143672183 143672328 -11957792 - B1_Mus1 SINE Alu 0 148 2 3 1681 474 119 0 0 chr4 143672955 143673039 -11957081 + (T)n Simple_repeat Simple_repeat 1 84 0 3 1681 1198 48 7 0 chr4 143673039 143673185 -11956935 - B1_Mus1 SINE Alu 0 148 2 3 1681 6671 96 3 22 chr4 143673231 143674439 -11955681 + L1_Mus1 LINE L1 5313 6503 -64 3 1681 2396 81 227 54 chr4 143674549 143675033 -11955087 + RLTR6_Mm LTR ERV1 37 604 -50 3 1681 57632 28 23 3 chr4 143675035 143682658 -11947462 + RLTR6-int LTR ERV1 1 7778 0 3 1681 2216 84 237 56 chr4 143682768 143683232 -11946888 + RLTR6_Mm LTR ERV1 37 584 -70 3 1681 356 62 16 0 chr4 143683234 143683298 -11946822 + L1_Mus1 LINE L1 6503 6567 0 3 1681 28 29 0 0 chr4 143683411 143683446 -11946674 + AT_rich Low_complexity Low_complexity 1 35 0 3 1681 263 273 88 37 chr4 143683602 143683819 -11946301 - RLTR15 LTR ERVK -83 276 49 3 1681 1195 49 0 0 chr4 143683841 143683984 -11946136 - B1_Mm SINE Alu -4 143 1 3 1681 2310 100 10 81 chr4 143684121 143684514 -11945606 - RLTR8 LTR ERVK 0 365 1 3 1681 345 83 0 0 chr4 143684557 143684605 -11945515 - B1_Mus1 SINE Alu -100 48 1 3 1681 11021 129 17 1 chr4 143684639 143686269 -11943851 - MERVL-int LTR ERVL -133 5352 3698 3 1681 992 132 6 0 chr4 143686269 143686435 -11943685 + (TTCC)n Simple_repeat Simple_repeat 3 169 0 3 1681 3353 82 45 2 chr4 143686852 143687314 -11942806 + RLTR45 LTR ERVK 1 482 0 3 1681 592 243 40 7 chr4 143689078 143689351 -11940769 + RMER19B LTR ERVK 1 223 -679 3 1681 2527 229 93 64 chr4 143689399 143689503 -11940617 + RMER19B LTR ERVK 1 90 -812 3 1681 3576 65 37 0 chr4 143689503 143689961 -11940159 + MT2C_Mm LTR ERVL 1 475 0 3 1681 2527 229 93 64 chr4 143689961 143690685 -11939435 + RMER19B LTR ERVK 91 853 -49 3 1681 207 0 0 0 chr4 143690689 143690712 -11939408 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1681 269 200 250 10 chr4 143690740 143690836 -11939284 + B3 SINE B2 1 119 -97 3 1681 264 30 0 0 chr4 143691020 143691053 -11939067 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1681 451 66 13 13 chr4 143691083 143691160 -11938960 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1681 855 118 59 0 chr4 143691799 143691934 -11938186 - B1_Mus1 SINE Alu -5 143 1 3 1681 355 337 79 32 chr4 143692246 143692406 -11937714 - B3 SINE B2 -7 209 37 3 1681 1116 69 0 7 chr4 143692406 143692552 -11937568 - B1_Mus2 SINE Alu -1 146 2 3 1681 355 337 79 32 chr4 143692552 143692581 -11937539 - B3 SINE B2 -180 36 11 3 1681 240 39 36 73 chr4 143692689 143692744 -11937376 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1681 811 98 13 119 chr4 143692913 143693064 -11937056 + B1_Mus1 SINE Alu 2 136 -12 3 1681 350 101 56 11 chr4 143693075 143693165 -11936955 + A-rich Low_complexity Low_complexity 2 95 0 3 1681 5049 211 69 11 chr4 143693987 143695302 -11934818 - Lx4A LINE L1 -49 7009 5619 3 1681 1348 266 39 0 chr4 143695297 143695782 -11934338 - Lx4A LINE L1 -6300 786 395 3 1681 1048 116 7 0 chr4 143695940 143696087 -11934033 + B1_Mus1 SINE Alu 1 148 0 3 1681 950 146 0 0 chr4 143696810 143696961 -11933159 - B2_Mm1t SINE B2 -6 187 37 3 1681 180 0 0 0 chr4 143698588 143698608 -11931512 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1681 1444 94 0 0 chr4 143699199 143699391 -11930729 + B2_Mm1a SINE B2 2 193 0 3 1681 408 283 122 51 chr4 143700221 143700418 -11929702 + B3 SINE B2 6 216 0 3 1681 344 73 354 35 chr4 143700994 143701107 -11929013 - B2_Mm2 SINE B2 0 195 47 3 1681 1050 139 6 0 chr4 143701134 143701306 -11928814 - B2_Mm2 SINE B2 -22 173 1 3 1681 215 175 0 100 chr4 143701393 143701416 -11928704 + T-rich Low_complexity Low_complexity 42 63 0 3 1681 1118 83 0 0 chr4 143701416 143701560 -11928560 - B1_Mus2 SINE Alu -1 146 3 3 1681 215 175 0 100 chr4 143701560 143701606 -11928514 + T-rich Low_complexity Low_complexity 1 41 0 3 1681 1086 110 0 0 chr4 143701606 143701752 -11928368 - B1_Mm SINE Alu 0 147 2 3 1681 1553 150 15 81 chr4 143701752 143702085 -11928035 - L1_Mur2 LINE L1 -39 5838 5528 3 1681 3458 103 15 18 chr4 143702064 143702631 -11927489 - L1_Mus3 LINE L1 -534 6104 5539 3 1681 5297 153 27 4 chr4 143702623 143703593 -11926527 - L1_Mus3 LINE L1 -1410 4473 3482 3 1681 2514 70 3 3 chr4 143703605 143703933 -11926187 - L1_Mus1 LINE L1 0 6567 6240 3 1681 3444 82 2 17 chr4 143703933 143704415 -11925705 + L1_Mus2 LINE L1 5599 6073 -493 3 1681 849 122 0 98 chr4 143704424 143704587 -11925533 - B1_Mus2 SINE Alu 0 147 1 3 1681 1191 111 33 0 chr4 143704830 143705010 -11925110 + B2_Mm1a SINE B2 1 186 -7 3 1681 1034 79 21 0 chr4 143705115 143705255 -11924865 - B1_Mus1 SINE Alu -1 147 5 3 1681 776 63 0 9 chr4 143705274 143705386 -11924734 - B1_Mm SINE Alu 0 147 37 3 1681 286 158 72 84 chr4 143705318 143705401 -11924719 - RLTR25B LTR ERVK -519 509 428 3 1681 1315 120 16 0 chr4 143705429 143705620 -11924500 - B2_Mm2 SINE B2 -1 194 1 3 1681 270 0 0 0 chr4 143705758 143705788 -11924332 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 3 1681 1083 90 14 0 chr4 143705788 143705932 -11924188 - B1_Mus2 SINE Alu 0 147 2 3 1681 4251 183 8 46 chr4 143705932 143706830 -11923290 - L1_Mus3 LINE L1 -39 5838 4975 3 1681 7014 114 23 17 chr4 143706828 143708128 -11921992 - L1_Mus3 LINE L1 0 6638 4350 3 1681 5272 153 26 4 chr4 143708128 143709090 -11921030 - L1_Mus3 LINE L1 -1419 4464 3482 3 1681 2514 70 3 3 chr4 143709103 143709431 -11920689 - L1_Mus1 LINE L1 0 6567 6240 3 1681 3426 84 2 17 chr4 143709431 143709913 -11920207 + L1_Mus2 LINE L1 5599 6073 -493 3 1681 853 116 0 99 chr4 143709925 143710087 -11920033 - B1_Mus2 SINE Alu -1 146 1 3 1681 1191 117 33 0 chr4 143710330 143710510 -11919610 + B2_Mm1a SINE B2 1 186 -7 3 1681 1022 86 21 0 chr4 143710615 143710755 -11919365 - B1_Mus1 SINE Alu -1 147 5 3 1681 768 63 0 9 chr4 143710774 143710886 -11919234 - B1_Mm SINE Alu 0 147 37 3 1681 1371 105 16 0 chr4 143710928 143711119 -11919001 - B2_Mm2 SINE B2 -1 194 1 3 1681 408 20 0 0 chr4 143711237 143711286 -11918834 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1681 847 148 7 0 chr4 143711286 143711421 -11918699 - B1_Mus2 SINE Alu -10 137 2 3 1681 1163 76 0 0 chr4 143711445 143711590 -11918530 - B1_Mm SINE Alu -1 146 2 3 1681 2064 182 9 54 chr4 143711590 143712037 -11918083 - L1_Mur2 LINE L1 -39 5838 5412 3 1681 351 143 16 0 chr4 143712037 143712100 -11918020 - B1_Mus1 SINE Alu -84 64 1 3 1681 23 0 0 0 chr4 143712287 143712310 -11917810 + AT_rich Low_complexity Low_complexity 1 23 0 3 1681 910 124 14 0 chr4 143712755 143712900 -11917220 - B1_Mus1 SINE Alu 0 148 2 3 1681 191 36 0 35 chr4 143713532 143713561 -11916559 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 3 1681 1156 62 7 0 chr4 143713561 143713707 -11916413 - B1_Mus1 SINE Alu 0 148 2 3 1681 7038 103 8 79 chr4 143713753 143714239 -11915881 + L1_Mus1 LINE L1 5313 5791 -776 3 1681 1150 71 0 0 chr4 143714239 143714380 -11915740 + B1_Mus2 SINE Alu 1 141 -6 3 1681 7038 73 11 55 chr4 143714380 143715198 -11914922 + L1_Mus1 LINE L1 5792 6567 0 3 1681 37 39 0 0 chr4 143715307 143715358 -11914762 + AT_rich Low_complexity Low_complexity 1 51 0 3 1681 23 0 0 0 chr4 143715486 143715509 -11914611 + AT_rich Low_complexity Low_complexity 1 23 0 3 1681 332 282 36 40 chr4 143715514 143715765 -11914355 - RLTR15 LTR ERVK -83 276 27 3 1681 251 224 209 0 chr4 143715770 143715837 -11914283 + RLTR6_Mm LTR ERV1 1 81 -573 3 1681 1708 133 274 47 chr4 143715877 143716326 -11913794 + RLTR6_Mm LTR ERV1 37 587 -67 3 1681 59859 35 13 0 chr4 143716344 143724022 -11906098 + RLTR6-int LTR ERV1 1 7778 0 3 1681 251 224 209 0 chr4 143724022 143724089 -11906031 + RLTR6_Mm LTR ERV1 1 81 -573 3 1681 1734 136 277 32 chr4 143724129 143724569 -11905551 + RLTR6_Mm LTR ERV1 37 584 -70 3 1681 2088 124 29 73 chr4 143724672 143725054 -11905066 - RLTR8 LTR ERVK 0 365 1 3 1681 317 115 19 0 chr4 143725092 143725144 -11904976 - B1_Mus1 SINE Alu -95 53 1 3 1681 13240 130 13 5 chr4 143725178 143727133 -11902987 - MERVL-int LTR ERVL -133 5352 3382 3 1681 225 108 0 0 chr4 143727299 143727336 -11902784 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1681 793 193 58 0 chr4 143727339 143727510 -11902610 - B2_Mm2 SINE B2 -12 183 3 3 1681 1164 75 0 0 chr4 143727642 143727789 -11902331 - B1_Mm SINE Alu 0 147 1 3 1681 1007 151 5 0 chr4 143727869 143728088 -11902032 + CT-rich Low_complexity Low_complexity 1 219 0 3 1681 212 286 18 0 chr4 143730064 143730120 -11900000 + B1F SINE Alu 1 57 -92 3 1681 616 226 6 84 chr4 143730283 143730564 -11899556 + RMER19B LTR ERVK 1 230 -672 3 1681 4996 128 11 15 chr4 143730610 143731419 -11898701 - L1_Mus4 LINE L1 -4 6632 5827 3 1681 229 196 59 0 chr4 143731450 143731501 -11898619 - B1_Mus2 SINE Alu -2 145 92 3 1681 1720 129 273 47 chr4 143731518 143731965 -11898155 - RLTR6_Mm LTR ERV1 -70 584 37 4 1681 226 161 222 16 chr4 143732010 143732073 -11898047 - RLTR6_Mm LTR ERV1 -578 76 1 4 1681 277 296 52 44 chr4 143732058 143732074 -11898046 - MT2B LTR ERVL -334 250 217 4 1681 300 270 54 0 chr4 143732074 143732148 -11897972 - B1_Mus1 SINE Alu -70 78 1 4 1681 277 296 52 44 chr4 143732148 143732191 -11897929 - MT2B LTR ERVL -334 216 117 4 1681 1473 245 79 38 chr4 143732360 143732864 -11897256 - RLTR11A2 LTR ERVK -2 525 1 4 1681 2756 154 98 2 chr4 143732955 143733802 -11896318 - L1_Mus4 LINE L1 -579 6057 5333 4 1681 4998 66 5 3 chr4 143733936 143734559 -11895561 + RLTR1 LTR ERV1 1 624 0 4 1681 366 361 0 0 chr4 143734598 143734731 -11895389 - ID_B1 SINE B4 -5 219 87 4 1681 3034 109 45 68 chr4 143734936 143735467 -11894653 + MURVY-LTR LTR ERV1 1 519 0 4 1681 239 351 25 50 chr4 143735605 143735725 -11894395 + PB1D7 SINE Alu 1 117 -3 4 1681 2273 127 19 145 chr4 143735866 143736336 -11893784 + RLTR9F LTR ERVK 1 411 -4 4 1681 1937 101 20 20 chr4 143736509 143736802 -11893318 + L1_Mus2 LINE L1 6223 6515 -51 4 1681 408 280 0 0 chr4 143737418 143737511 -11892609 - B1_Mur2 SINE Alu -34 115 23 4 1681 334 380 6 19 chr4 143737642 143737803 -11892317 - ID_B1 SINE B4 -1 223 65 4 1681 235 319 8 57 chr4 143738138 143738261 -11891859 + PB1D7 SINE Alu 1 117 -3 4 1681 22 0 0 0 chr4 143738284 143738306 -11891814 + AT_rich Low_complexity Low_complexity 1 22 0 4 1681 38619 14 1 7 chr4 143738702 143743901 -11886219 + L1Md_A LINE L1 423 5586 -297 4 1681 8991 14 0 0 chr4 143743901 143744897 -11885223 + L1Md_A LINE L1 5587 6582 0 4 1681 242 268 91 23 chr4 143744976 143745064 -11885056 - B1F1 SINE Alu -9 140 47 4 1681 1714 251 29 41 chr4 143745065 143745309 -11884811 + RLTR28 LTR ERVL 1 255 -269 4 1681 1432 60 5 21 chr4 143745309 143745495 -11884625 - B2_Mm1a SINE B2 -9 184 2 4 1681 1714 251 29 41 chr4 143745495 143745762 -11884358 + RLTR28 LTR ERVL 256 506 -18 4 1681 3452 52 35 14 chr4 143746341 143746827 -11883293 + LTRIS2 LTR ERV1 69 564 0 4 1681 1280 91 26 16 chr4 143747279 143747469 -11882651 + B2_Mm1a SINE B2 2 193 0 4 1681 210 176 0 0 chr4 143748904 143748955 -11881165 + A-rich Low_complexity Low_complexity 2 52 0 4 1681 535 298 0 0 chr4 143750596 143750717 -11879403 - B1_Mur4 SINE Alu -28 122 2 4 1681 207 0 0 0 chr4 143750954 143750977 -11879143 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1681 1036 97 7 0 chr4 143751265 143751409 -11878711 + B1_Mus2 SINE Alu 2 146 -1 4 1681 1303 244 53 25 chr4 143751514 143751875 -11878245 - Lx3C LINE L1 -2 6974 6604 4 1681 1844 209 14 16 chr4 143751862 143752321 -11877799 + Lx3A LINE L1 5315 5939 -1042 4 1681 240 35 0 0 chr4 143752350 143752379 -11877741 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 4 1681 332 246 0 0 chr4 143752771 143752840 -11877280 + B1_Mus1 SINE Alu 20 88 -60 4 1681 2538 150 9 113 chr4 143754050 143754627 -11875493 - RMER19A LTR ERVK -218 519 3 4 1681 442 228 0 0 chr4 143754628 143754720 -11875400 + B1_Mus2 SINE Alu 36 127 -20 4 1681 279 0 0 0 chr4 143754888 143754919 -11875201 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1681 371 313 30 22 chr4 143755048 143755182 -11874938 - B3 SINE B2 -74 142 8 4 1681 3139 42 39 5 chr4 143755213 143755596 -11874524 + MTA_Mm LTR MaLR 1 396 0 4 1681 292 358 24 0 chr4 143755599 143755722 -11874398 - B1_Mur2 SINE Alu -23 126 1 4 1681 469 300 14 0 chr4 143755818 143755958 -11874162 - B1_Mur2 SINE Alu -7 142 1 4 1681 312 291 9 52 chr4 143756819 143756935 -11873185 + PB1D7 SINE Alu 1 111 -9 4 1681 180 0 0 0 chr4 143757137 143757157 -11872963 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1681 306 150 0 16 chr4 143757167 143757228 -11872892 - B1_Mur2 SINE Alu -22 127 68 4 1681 721 182 0 0 chr4 143757239 143757376 -11872744 - L1_Mur2 LINE L1 -3417 2460 2324 4 1681 317 216 102 0 chr4 143757484 143757572 -11872548 - B1_Mus1 SINE Alu -50 98 2 4 1681 432 0 0 0 chr4 143757842 143757890 -11872230 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1681 286 256 23 11 chr4 143757896 143757983 -11872137 - PB1D9 SINE Alu 0 120 33 4 1681 505 230 71 7 chr4 143758187 143758327 -11871793 + B1_Mur2 SINE Alu 1 149 0 4 1681 1518 224 31 6 chr4 143758484 143758834 -11871286 - Lx4A LINE L1 -3 7055 6697 4 1681 439 304 71 35 chr4 143758853 143759098 -11871022 - RLTR20C LTR ERVK -260 274 1 4 1681 4420 186 71 19 chr4 143759098 143760258 -11869862 - RLTR19-int LTR ERVK -858 5279 4060 4 1681 1825 259 77 26 chr4 143760258 143760916 -11869204 + Lx2B LINE L1 6265 7054 -4 4 1681 4289 157 8 25 chr4 143760919 143761722 -11868398 + L1_Mur2 LINE L1 4105 4893 -984 4 1681 829 259 108 0 chr4 143761723 143761955 -11868165 + RLTR33 LTR ERVK 337 593 -85 4 1681 38926 10 0 7 chr4 143761988 143767238 -11862882 + L1Md_A LINE L1 379 5586 -297 4 1681 8894 19 0 0 chr4 143767238 143768234 -11861886 + L1Md_A LINE L1 5587 6582 0 4 1681 255 342 0 0 chr4 143768435 143768543 -11861577 - B1F2 SINE Alu -36 113 6 4 1681 6979 91 22 5 chr4 143768590 143769712 -11860408 - L1_Mus1 LINE L1 0 6567 5434 4 1681 2552 119 128 2 chr4 143769712 143770140 -11859980 + RLTR45 LTR ERVK 1 482 0 4 1681 6393 103 17 8 chr4 143770140 143770624 -11859496 - L1_Mus1 LINE L1 -450 5433 4948 4 1681 3720 39 0 0 chr4 143770625 143771100 -11859020 + L1Md_T LINE L1 6142 6582 0 4 1681 8138 114 55 10 chr4 143771102 143773270 -11856850 - L1_Mus1 LINE L1 -941 4942 860 4 1681 2252 134 0 3 chr4 143773250 143773578 -11856542 - L1_Mus1 LINE L1 -5903 735 409 4 1681 278 267 0 85 chr4 143773718 143773800 -11856320 - ID_B1 SINE B4 -37 187 113 4 1681 215 349 26 62 chr4 143773800 143773831 -11856289 - B1F SINE Alu -40 109 1 4 1681 240 278 0 49 chr4 143774096 143774159 -11855961 + A-rich Low_complexity Low_complexity 6 65 0 4 1681 594 220 49 21 chr4 143774159 143774303 -11855817 + B1_Mus1 SINE Alu 1 148 0 4 1681 240 278 0 49 chr4 143774303 143774341 -11855779 + A-rich Low_complexity Low_complexity 66 102 0 4 1681 270 372 32 13 chr4 143775385 143775540 -11854580 - ID_B1 SINE B4 -3 221 64 4 1681 2977 161 82 44 chr4 143776216 143776985 -11853135 + RLTR13C1 LTR ERVK 1 983 0 4 1681 278 333 8 8 chr4 143776994 143777118 -11853002 + B1_Mur2 SINE Alu 21 144 -5 4 1681 235 345 56 30 chr4 143777144 143777341 -11852779 + B3 SINE B2 12 213 -3 4 1681 250 311 54 32 chr4 143778013 143778106 -11852014 + B3 SINE B2 42 136 -80 4 1681 342 204 0 0 chr4 143778218 143778321 -11851799 + (TA)n Simple_repeat Simple_repeat 1 103 0 4 1681 350 259 12 0 chr4 143778464 143778549 -11851571 - B1_Mus2 SINE Alu -21 126 41 4 1681 2269 205 64 8 chr4 143778553 143779040 -11851080 + RMER19A LTR ERVK 1 514 -223 4 1681 2268 214 30 22 chr4 143780831 143781439 -11848681 - Lx5 LINE L1 -1117 5933 5319 4 1681 1095 241 81 3 chr4 143781432 143781728 -11848392 + Lx3C LINE L1 6613 6931 -45 4 1681 916 186 0 0 chr4 143782145 143782306 -11847814 + B2_Mm2 SINE B2 1 161 -34 4 1681 498 70 0 0 chr4 143782306 143782377 -11847743 + (TAAA)n Simple_repeat Simple_repeat 1 71 0 4 1681 524 285 112 20 chr4 143782377 143782412 -11847708 + B3 SINE B2 182 214 -2 4 1681 303 93 0 0 chr4 143782542 143782585 -11847535 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1681 658 206 13 76 chr4 143783581 143783739 -11846381 + B1_Mur4 SINE Alu 3 150 0 4 1681 183 42 0 0 chr4 143785348 143785372 -11844748 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1682 2102 230 28 22 chr4 143787724 143788231 -11841889 - RLTR28 LTR ERVL -14 510 1 4 1682 315 346 37 8 chr4 143788912 143789046 -11841074 + B1_Mur2 SINE Alu 3 140 -9 4 1682 303 336 35 0 chr4 143789559 143789672 -11840448 - PB1D7 SINE Alu -3 117 1 4 1682 28615 91 10 58 chr4 143790416 143792519 -11837601 - L1Md_F2 LINE L1 -1 6581 4496 4 1682 568 220 161 38 chr4 143792519 143792755 -11837365 + RLTR10A LTR ERVK 147 411 0 4 1682 28615 91 10 58 chr4 143792755 143795736 -11834384 - L1Md_F2 LINE L1 -1 4495 1537 4 1682 3520 161 45 17 chr4 143795738 143796377 -11833743 - L1Md_F LINE L1 -5767 752 104 4 1682 483 267 7 58 chr4 143799700 143799855 -11830265 - B1_Mur2 SINE Alu -1 148 2 4 1682 221 0 0 33 chr4 143800677 143800707 -11829413 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1682 518 224 7 0 chr4 143800875 143801022 -11829098 + (TA)n Simple_repeat Simple_repeat 2 149 0 4 1682 882 204 5 36 chr4 143801120 143801313 -11828807 - B2_Mm2 SINE B2 -8 187 1 4 1682 247 269 0 0 chr4 143801640 143801692 -11828428 + PB1D9 SINE Alu 32 83 -37 4 1682 1312 221 137 9 chr4 143801693 143802021 -11828099 - Lx3C LINE L1 0 6976 6607 4 1682 3110 174 12 3 chr4 143802008 143802618 -11827502 + Lx3C LINE L1 5319 5931 -1045 4 1682 195 42 0 0 chr4 143802657 143802681 -11827439 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1682 323 57 38 0 chr4 143802684 143802737 -11827383 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1682 269 312 25 38 chr4 143803149 143803229 -11826891 + B1_Mus1 SINE Alu 9 87 -61 4 1682 424 228 3 6 chr4 143803252 143803351 -11826769 + ORR1A2 LTR MaLR 54 150 -179 4 1682 249 33 0 0 chr4 143803658 143803688 -11826432 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 4 1682 1099 185 25 142 chr4 143803700 143804065 -11826055 - RLTRETN_Mm LTR ERVK 0 322 1 4 1682 281 233 17 0 chr4 143804461 143804521 -11825599 - PB1D9 SINE Alu -55 65 5 4 1682 690 286 23 12 chr4 143805482 143805655 -11824465 - B3A SINE B2 -22 176 2 4 1682 472 261 0 9 chr4 143805670 143805782 -11824338 - B1_Mur4 SINE Alu -1 149 39 4 1682 1857 190 72 23 chr4 143805793 143806225 -11823895 - MTC-int LTR MaLR -804 454 2 4 1682 3228 152 16 107 chr4 143806301 143807029 -11823091 + RLTR22_Mur LTR ERVK 366 1027 -821 4 1682 218 263 171 0 chr4 143807364 143807440 -11822680 + ID_B1 SINE B4 35 123 -101 4 1682 646 221 27 14 chr4 143807479 143807626 -11822494 + URR1A DNA MER1_type 62 210 -16 5 1682 269 313 0 92 chr4 143807621 143807730 -11822390 + ID_B1 SINE B4 113 211 -13 4 1682 471 18 0 0 chr4 143807901 143807957 -11822163 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1682 491 143 20 50 chr4 143807957 143808064 -11822056 - B1_Mur4 SINE Alu -31 118 15 5 1682 488 236 102 39 chr4 143808204 143808332 -11821788 - B1_Mur2 SINE Alu -9 140 5 5 1682 1202 56 21 0 chr4 143808361 143808505 -11821615 + B1_Mm SINE Alu 1 147 0 5 1682 336 119 0 0 chr4 143808506 143808565 -11821555 + (A)n Simple_repeat Simple_repeat 1 59 0 5 1682 5535 108 51 95 chr4 143809011 143809945 -11820175 + RLTR13B1 LTR ERVK 1 893 0 5 1682 578 309 53 10 chr4 143809952 143810158 -11819962 - B3 SINE B2 0 216 2 5 1682 255 304 55 185 chr4 143810234 143810261 -11819859 - B4 SINE B4 0 292 269 5 1682 207 0 0 0 chr4 143810261 143810284 -11819836 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 5 1682 546 290 41 77 chr4 143810284 143810510 -11819610 - ID_B1 SINE B4 -24 268 72 5 1682 257 242 0 114 chr4 143810995 143811065 -11819055 + PB1 SINE Alu 47 108 -19 5 1682 341 219 216 10 chr4 143811232 143811329 -11818791 - B3 SINE B2 -36 180 64 5 1682 258 292 0 0 chr4 143811499 143811564 -11818556 + MurSatRep1 Unknown Unknown 223 287 -1850 5 1682 4360 148 39 18 chr4 143811659 143812370 -11817750 + Lx2 LINE L1 6271 6996 -1 5 1682 319 214 33 77 chr4 143812468 143812559 -11817561 - ID_B1 SINE B4 -34 190 104 5 1682 21 0 0 0 chr4 143812869 143812890 -11817230 + AT_rich Low_complexity Low_complexity 1 21 0 5 1682 515 199 11 211 chr4 143812899 143813084 -11817036 + B1_Mus1 SINE Alu 1 148 0 5 1682 258 292 0 0 chr4 143813426 143813491 -11816629 + MurSatRep1 Unknown Unknown 223 287 -1850 5 1682 287 146 0 0 chr4 143814675 143814723 -11815397 - RMER4B LTR ERVK 0 585 538 5 1682 360 64 0 0 chr4 143814724 143814771 -11815349 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1682 775 50 0 10 chr4 143814771 143814871 -11815249 - B1_Mm SINE Alu -9 138 40 5 1682 1718 235 135 16 chr4 143814861 143815350 -11814770 - RMER4B LTR ERVK -29 556 10 5 1682 2518 147 5 3 chr4 143815636 143816018 -11814102 + SRV_MM-int LTR ERVK 628 1010 -5157 5 1682 15034 97 7 16 chr4 143816028 143817992 -11812128 + SRV_MM-int LTR ERVK 1336 3292 -2875 5 1682 1703 37 0 0 chr4 143817992 143818179 -11811941 - B2_Mm1t SINE B2 -5 188 2 5 1682 15034 97 7 16 chr4 143818179 143818282 -11811838 + SRV_MM-int LTR ERVK 3293 3385 -2782 5 1682 3251 160 19 3 chr4 143818282 143818852 -11811268 + L1Md_A LINE L1 422 1000 -5724 5 1682 3160 46 8 0 chr4 143818852 143819220 -11810900 + L1Md_F3 LINE L1 6214 6584 0 5 1682 37211 51 4 5 chr4 143819224 143824552 -11805568 + L1Md_T LINE L1 306 5586 -297 5 1682 9064 30 0 0 chr4 143824552 143825548 -11804572 + L1Md_T LINE L1 5587 6582 0 5 1682 20293 91 9 26 chr4 143825567 143825986 -11804134 + SRV_MM-int LTR ERVK 3370 3781 -2386 5 1682 198 0 0 0 chr4 143825986 143826008 -11804112 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 5 1682 20293 91 9 26 chr4 143826008 143828436 -11801684 + SRV_MM-int LTR ERVK 3782 6167 0 5 1682 2968 90 0 0 chr4 143828436 143828801 -11801319 + RLTR8 LTR ERVK 1 365 0 5 1682 260 182 23 0 chr4 143828801 143828845 -11801275 - RLTR19B LTR ERVK -665 50 6 5 1682 4588 117 39 111 chr4 143829181 143829530 -11800590 + RLTR13D6 LTR ERVK 37 376 -526 5 1682 1150 82 7 27 chr4 143829530 143829680 -11800440 + B1_Mm SINE Alu 1 147 0 5 1682 4588 117 39 111 chr4 143829680 143830264 -11799856 + RLTR13D6 LTR ERVK 377 902 0 5 1682 1611 255 20 32 chr4 143830269 143830670 -11799450 + Lx5 LINE L1 6610 7005 -45 5 1682 27 73 0 0 chr4 143830684 143830739 -11799381 + AT_rich Low_complexity Low_complexity 1 55 0 5 1682 373 293 61 54 chr4 143830810 143830958 -11799162 - B1F SINE Alu 0 149 1 5 1682 532 272 22 7 chr4 143830826 143830963 -11799157 - ID_B1 SINE B4 -8 216 78 5 1682 1874 210 56 12 chr4 143831136 143831545 -11798575 - Lx4B LINE L1 0 7058 6632 5 1682 1011 193 25 10 chr4 143831545 143831749 -11798371 + ORR1A2 LTR MaLR 121 327 0 5 1682 1015 122 6 6 chr4 143833004 143833177 -11796943 + (TTC)n Simple_repeat Simple_repeat 2 174 0 5 1682 587 276 30 35 chr4 143833182 143833385 -11796735 - B3 SINE B2 -13 203 2 5 1682 330 283 20 10 chr4 143833605 143833705 -11796415 + ID_B1 SINE B4 113 213 -11 5 1682 220 114 0 0 chr4 143834339 143834374 -11795746 + B2_Mm2 SINE B2 4 38 -157 5 1682 342 0 0 0 chr4 143834625 143834663 -11795457 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 1682 323 227 41 23 chr4 143834700 143834822 -11795298 + RLTR13D3 LTR ERVK 987 1072 -42 5 1682 525 258 22 29 chr4 143835142 143835278 -11794842 + B1_Mur2 SINE Alu 10 144 -5 5 1682 4079 73 15 9 chr4 143835373 143835912 -11794208 + L1Md_F2 LINE L1 6029 6570 -12 5 1682 395 161 0 0 chr4 143835914 143835976 -11794144 - Lx4B LINE L1 -560 6498 6437 5 1682 1050 22 14 7 chr4 143835977 143836115 -11794005 + (GAGAA)n Simple_repeat Simple_repeat 4 142 0 5 1682 383 274 12 104 chr4 143836125 143836288 -11793832 + B1_Mus1 SINE Alu 2 149 -1 5 1682 266 333 10 31 chr4 143836303 143836399 -11793721 + RSINE1 SINE B4 8 101 -64 5 1682 246 163 0 0 chr4 143836406 143836449 -11793671 + B1_Mus2 SINE Alu 90 132 -15 5 1682 305 237 79 0 chr4 143836496 143836572 -11793548 + B1_Mus2 SINE Alu 6 87 -60 5 1682 226 306 32 0 chr4 143836709 143836771 -11793349 + ID4 SINE ID 3 66 -17 5 1682 285 211 26 13 chr4 143836853 143836930 -11793190 - RMER15 LTR ERVL -90 485 408 5 1682 28682 112 13 13 chr4 143838696 143841297 -11788823 + L1VL1 LINE L1 217 2914 -2969 5 1682 1008 131 0 0 chr4 143841297 143841442 -11788678 + B1_Mus1 SINE Alu 4 148 0 5 1682 654 49 0 0 chr4 143841447 143841529 -11788591 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 5 1682 28682 111 7 11 chr4 143841529 143844179 -11785941 + L1VL1 LINE L1 2915 5562 -321 5 1682 213 65 0 0 chr4 143844394 143844425 -11785695 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1682 711 0 0 0 chr4 143844457 143844536 -11785584 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 5 1682 791 21 0 10 chr4 143844619 143844717 -11785403 + (GAAAA)n Simple_repeat Simple_repeat 3 99 0 5 1682 263 0 81 0 chr4 143844983 143845020 -11785100 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 5 1682 803 208 15 63 chr4 143845033 143845046 -11785074 - B2_Mm2 SINE B2 0 195 185 5 1682 828 218 32 11 chr4 143845046 143845236 -11784884 - B2_Mm2 SINE B2 0 195 2 5 1682 803 208 15 63 chr4 143845236 143845427 -11784693 - B2_Mm2 SINE B2 -11 184 1 5 1682 322 219 0 0 chr4 143845460 143845524 -11784596 + RLTR33 LTR ERVK 175 238 -440 5 1682 616 155 33 33 chr4 143845501 143845621 -11784499 - B2_Mm2 SINE B2 -74 121 2 5 1682 855 143 87 0 chr4 143848038 143848199 -11781921 + B2_Mm2 SINE B2 7 181 -14 5 1682 212 356 10 0 chr4 143848620 143848721 -11781399 - B1F SINE Alu -3 146 45 5 1682 1372 80 21 5 chr4 143848831 143848859 -11781261 - B2_Mm1a SINE B2 -1 192 161 5 1682 414 0 0 0 chr4 143848859 143848905 -11781215 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1682 1372 80 21 5 chr4 143848905 143849065 -11781055 - B2_Mm1a SINE B2 -33 160 1 5 1682 271 339 0 9 chr4 143849072 143849188 -11780932 + T-rich Low_complexity Low_complexity 1 115 0 5 1682 1078 108 0 0 chr4 143849751 143849899 -11780221 + B1_Mus1 SINE Alu 1 148 0 5 1682 29 28 0 0 chr4 143849899 143849935 -11780185 + AT_rich Low_complexity Low_complexity 1 36 0 5 1682 257 294 51 64 chr4 143851142 143851298 -11778822 + MuLV-int LTR ERV1 2028 2181 -5375 5 1682 655 325 62 30 chr4 143851783 143852035 -11778085 + MuLV-int LTR ERV1 2641 2909 -4697 5 1682 477 0 0 0 chr4 143852035 143852088 -11778032 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1682 655 332 62 28 chr4 143852088 143852235 -11777885 + MuLV-int LTR ERV1 2910 3162 -4616 5 1682 1045 116 0 0 chr4 143852379 143852526 -11777594 + B1_Mus1 SINE Alu 1 147 -1 5 1682 23 0 0 0 chr4 143852974 143852997 -11777123 + AT_rich Low_complexity Low_complexity 1 23 0 5 1682 1044 109 7 0 chr4 143853184 143853331 -11776789 + B1_Mus1 SINE Alu 1 148 0 5 1682 186 24 22 89 chr4 143853331 143853376 -11776744 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 5 1682 1242 115 21 16 chr4 143853496 143853690 -11776430 + B2_Mm2 SINE B2 1 195 0 5 1682 733 51 0 0 chr4 143853734 143853832 -11776288 + B1_Mm SINE Alu 37 134 -13 5 1682 510 46 0 0 chr4 143853834 143853899 -11776221 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1682 1058 71 21 0 chr4 143853912 143854052 -11776068 + B1_Mus1 SINE Alu 5 147 -1 5 1682 1225 105 39 0 chr4 143854158 143854339 -11775781 - B2_Mm1a SINE B2 -5 188 1 5 1682 1029 102 0 20 chr4 143854581 143854731 -11775389 + B1_Mm SINE Alu 1 147 0 5 1682 3299 91 22 0 chr4 143854746 143855210 -11774910 - L1_Mus2 LINE L1 -494 6072 5599 5 1682 2577 61 3 3 chr4 143855210 143855538 -11774582 + L1_Mus1 LINE L1 6240 6567 0 5 1682 5068 166 26 4 chr4 143855551 143856513 -11773607 + L1_Mus3 LINE L1 3482 4464 -1419 5 1682 6903 131 14 28 chr4 143856513 143856663 -11773457 + L1_Mus3 LINE L1 5539 5684 -199 5 1682 1960 50 0 0 chr4 143856663 143856901 -11773219 + L1Md_A LINE L1 6345 6582 0 5 1682 6903 132 33 22 chr4 143856901 143858053 -11772067 + L1_Mus3 LINE L1 4401 6638 0 5 1682 4203 188 7 44 chr4 143858075 143858948 -11771172 + L1_Mus3 LINE L1 4995 5835 -42 5 1682 1024 78 0 0 chr4 143858948 143859077 -11771043 + B1_Mus2 SINE Alu 2 130 -17 5 1682 4203 188 7 44 chr4 143859077 143859098 -11771022 + L1_Mus3 LINE L1 5836 5856 -21 5 1682 216 86 0 0 chr4 143859098 143859133 -11770987 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1682 1202 184 8 153 chr4 143859133 143859205 -11770915 + L1_Mus3 LINE L1 5838 5900 -1158 5 1682 1035 146 6 0 chr4 143859231 143859402 -11770718 + B2_Mm2 SINE B2 1 172 -23 5 1682 276 108 354 35 chr4 143859430 143859543 -11770577 + B2_Mm2 SINE B2 47 195 0 5 1682 408 283 122 51 chr4 143860123 143860320 -11769800 - B3 SINE B2 0 216 6 5 1682 654 13 0 0 chr4 143861707 143861782 -11768338 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1682 1010 119 0 0 chr4 143863379 143863530 -11766590 + B2_Mm1t SINE B2 37 187 -6 5 1682 1082 102 7 0 chr4 143864254 143864401 -11765719 - B1_Mus1 SINE Alu 0 148 1 5 1682 1300 266 66 9 chr4 143864559 143865046 -11765074 + Lx4A LINE L1 388 786 -6300 5 1682 5265 211 63 3 chr4 143865041 143866353 -11763767 + Lx4A LINE L1 5619 7009 -49 5 1682 261 309 36 18 chr4 143866628 143866740 -11763380 + ID_B1 SINE B4 106 219 -5 5 1682 922 88 0 188 chr4 143867251 143867432 -11762688 - B1_Mus1 SINE Alu 0 148 2 5 1682 211 82 39 39 chr4 143867613 143867664 -11762456 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 5 1682 410 299 95 26 chr4 143867760 143867949 -11762171 + B3 SINE B2 11 212 -4 5 1682 859 118 59 0 chr4 143868262 143868397 -11761723 + B1_Mus1 SINE Alu 1 143 -5 5 1682 210 71 0 0 chr4 143869038 143869066 -11761054 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1682 414 0 0 0 chr4 143869116 143869162 -11760958 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1682 327 212 261 8 chr4 143869312 143869431 -11760689 - B3 SINE B2 -67 149 1 6 1682 183 42 0 0 chr4 143869459 143869483 -11760637 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1682 2569 224 95 65 chr4 143869483 143870206 -11759914 - RMER19B LTR ERVK -49 853 91 6 1682 3562 66 39 0 chr4 143870206 143870663 -11759457 - MT2C_Mm LTR ERVL 0 475 1 6 1682 2569 224 95 65 chr4 143870663 143870767 -11759353 - RMER19B LTR ERVK -812 90 1 6 1682 1423 249 97 10 chr4 143871217 143871700 -11758420 + RLTR11A2 LTR ERVK 1 525 -2 6 1682 539 252 50 0 chr4 143871912 143872051 -11758069 + B1_Mus1 SINE Alu 1 146 -2 6 1682 4978 126 15 15 chr4 143872086 143872893 -11757227 + L1_Mus4 LINE L1 5827 6633 -3 6 1682 537 222 66 9 chr4 143873038 143873208 -11756912 - RMER19B LTR ERVK -557 180 1 6 1682 738 53 0 0 chr4 143875390 143875485 -11754635 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 6 1682 217 53 0 116 chr4 143875538 143875555 -11754565 + A-rich Low_complexity Low_complexity 1 14 0 6 1682 1172 75 0 0 chr4 143875555 143875701 -11754419 + B1_Mm SINE Alu 1 146 -1 6 1682 217 53 0 116 chr4 143875701 143875726 -11754394 + A-rich Low_complexity Low_complexity 15 38 0 6 1682 781 193 58 0 chr4 143875846 143876017 -11754103 + B2_Mm2 SINE B2 3 183 -12 6 1682 210 91 0 0 chr4 143876020 143876053 -11754067 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1682 12940 132 15 10 chr4 143876215 143878175 -11751945 + MERVL-int LTR ERVL 3382 5352 -133 6 1682 326 132 0 0 chr4 143878209 143878262 -11751858 + B1_Mus1 SINE Alu 1 53 -95 6 1682 2079 100 71 76 chr4 143878300 143878667 -11751453 + RLTR8 LTR ERVK 1 365 0 6 1682 434 285 32 43 chr4 143878744 143879023 -11751097 + RLTR15 LTR ERVK 1 276 -83 6 1682 7165 68 38 2 chr4 143879331 143880251 -11749869 - L1_Mus1 LINE L1 0 6567 5614 6 1682 657 38 0 0 chr4 143880251 143880331 -11749789 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1682 7165 110 50 2 chr4 143880331 143880633 -11749487 - L1_Mus1 LINE L1 -270 5613 5312 6 1682 1182 48 7 0 chr4 143881220 143881365 -11748755 + B1_Mus2 SINE Alu 1 146 -1 6 1682 615 39 0 0 chr4 143881374 143881452 -11748668 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 6 1682 1000 104 0 0 chr4 143881531 143881666 -11748454 + B1_Mus1 SINE Alu 2 136 -12 6 1682 188 34 0 33 chr4 143881668 143881698 -11748422 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1682 230 56 28 0 chr4 143881826 143881862 -11748258 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1682 3525 220 44 45 chr4 143882077 143882651 -11747469 + RMER13A LTR ERVK 1 572 -288 6 1682 234 0 0 0 chr4 143882651 143882677 -11747443 + (CCA)n Simple_repeat Simple_repeat 2 27 0 6 1682 3525 220 44 45 chr4 143882677 143882963 -11747157 + RMER13A LTR ERVK 573 860 0 6 1682 3749 202 117 19 chr4 143882969 143883275 -11746845 + Lx5 LINE L1 5823 6191 -859 6 1682 1065 97 0 7 chr4 143883275 143883414 -11746706 + B1_Mm SINE Alu 1 139 -8 6 1682 244 0 56 0 chr4 143883414 143883450 -11746670 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1682 3749 202 117 19 chr4 143883455 143883509 -11746611 + Lx5 LINE L1 6192 6245 -805 6 1682 1051 165 10 26 chr4 143883509 143883702 -11746418 - B2_Mm2 SINE B2 -5 190 1 6 1682 3749 221 159 21 chr4 143883702 143884427 -11745693 + Lx5 LINE L1 6246 7045 -5 6 1682 6213 74 11 0 chr4 143884477 143885276 -11744844 - RLTR13C2 LTR ERVK 0 808 1 6 1682 976 139 0 0 chr4 143885339 143885476 -11744644 + B1_Mus2 SINE Alu 5 141 -6 6 1682 746 263 31 28 chr4 143885485 143885734 -11744386 + MYSERV-int LTR ERVK 3828 4260 -4699 6 1682 1010 109 0 7 chr4 143885994 143886142 -11743978 - B1_Mus2 SINE Alu 0 147 1 6 1682 335 169 56 0 chr4 143886181 143886252 -11743868 + PB1D9 SINE Alu 7 81 -39 6 1682 580 71 24 0 chr4 143886508 143886593 -11743527 + B2_Mm2 SINE B2 2 88 -107 6 1682 250 62 20 40 chr4 143888324 143888374 -11741746 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1682 216 0 0 0 chr4 143889367 143889391 -11740729 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1682 353 75 0 19 chr4 143889661 143889715 -11740405 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 6 1682 618 14 0 0 chr4 143889797 143889868 -11740252 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 6 1682 903 180 12 24 chr4 143889872 143890037 -11740083 - B2_Mm2 SINE B2 -31 164 2 6 1682 921 180 37 68 chr4 143890037 143890228 -11739892 - B2_Mm2 SINE B2 -10 185 1 6 1682 1144 267 119 70 chr4 143890261 143890716 -11739404 + RLTR33 LTR ERVK 175 651 -27 6 1682 434 291 58 34 chr4 143891078 143891284 -11738836 + ID_B1 SINE B4 5 215 -9 6 1682 773 114 9 0 chr4 143891476 143891590 -11738530 + B1_Mus1 SINE Alu 2 116 -32 6 1682 366 23 0 0 chr4 143891596 143891639 -11738481 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1682 1326 92 11 0 chr4 143891656 143892003 -11738117 + (GAAA)n Simple_repeat Simple_repeat 1 350 0 6 1682 1211 111 55 11 chr4 143892020 143892202 -11737918 + B2_Mm2 SINE B2 2 191 -4 6 1682 207 0 0 0 chr4 143892527 143892550 -11737570 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1682 1093 99 7 7 chr4 143892558 143892700 -11737420 - B1_Mus1 SINE Alu -2 146 5 6 1682 896 152 105 0 chr4 143892714 143892885 -11737235 - B2_Mm2 SINE B2 0 195 7 6 1682 236 350 97 14 chr4 143895166 143895311 -11734809 + ID_B1 SINE B4 64 220 -4 6 1682 946 146 104 0 chr4 143895313 143895477 -11734643 + B2_Mm2 SINE B2 1 181 -14 6 1682 216 362 0 19 chr4 143895896 143896003 -11734117 - B1F SINE Alu 0 149 45 6 1682 180 250 0 0 chr4 143896113 143896177 -11733943 + T-rich Low_complexity Low_complexity 2 65 0 6 1682 1193 95 0 0 chr4 143896813 143896961 -11733159 + B1_Mus1 SINE Alu 1 148 0 6 1682 201 74 0 0 chr4 143896961 143896988 -11733132 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 6 1682 1404 87 11 0 chr4 143897980 143898165 -11731955 + B2_Mm1t SINE B2 2 188 -5 6 1682 342 347 72 43 chr4 143898539 143898816 -11731304 + RLTR4_MM-int LTR ERV1 2101 2385 -5216 6 1682 536 333 41 2 chr4 143899055 143899301 -11730819 + RLTR4_MM-int LTR ERV1 2619 3022 -4756 6 1682 360 0 0 0 chr4 143899301 143899341 -11730779 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1682 433 346 77 23 chr4 143899341 143899487 -11730633 + RLTR4_MM-int LTR ERV1 3023 3166 -4612 6 1682 1094 97 0 40 chr4 143899632 143899782 -11730338 + B1_Mus1 SINE Alu 5 148 0 6 1682 180 0 0 0 chr4 143899782 143899802 -11730318 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1682 1240 62 7 0 chr4 143899813 143899958 -11730162 + B1_Mus1 SINE Alu 2 147 -1 6 1682 381 138 0 0 chr4 143899960 143900040 -11730080 + (A)n Simple_repeat Simple_repeat 1 80 0 6 1682 1474 70 27 0 chr4 143900126 143900311 -11729809 - B2_Mm1a SINE B2 -3 190 1 6 1682 3303 38 1 1 chr4 143900562 143900964 -11729156 - L1Md_F2 LINE L1 -620 5962 5588 6 1682 5074 51 7 3 chr4 143900964 143901559 -11728561 + L1Md_F2 LINE L1 5986 6582 0 6 1682 891 89 177 0 chr4 143901573 143901697 -11728423 + B1_Mm SINE Alu 1 146 -1 6 1682 226 269 92 51 chr4 143901730 143901828 -11728292 - RLTR19C LTR ERVK -380 126 25 6 1682 802 248 0 0 chr4 143901942 143902091 -11728029 + B1_Mur2 SINE Alu 1 149 0 6 1682 378 0 0 0 chr4 143902573 143902615 -11727505 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1682 692 243 117 17 chr4 143903113 143903293 -11726827 + B3 SINE B2 1 198 -18 6 1682 554 179 70 18 chr4 143903299 143903413 -11726707 + B1_Mus2 SINE Alu 22 141 -6 6 1682 1080 24 0 0 chr4 143903414 143903541 -11726579 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 6 1682 656 159 134 8 chr4 143903569 143903696 -11726424 + B1_Mur4 SINE Alu 8 150 0 6 1682 303 252 111 24 chr4 143903988 143904030 -11726090 - RLTR42-int LTR ERVK -1639 7320 7275 6 1682 623 190 170 6 chr4 143904030 143904189 -11725931 - B2_Mm2 SINE B2 -8 187 3 6 1682 728 125 152 141 chr4 143904189 143904426 -11725694 - RLTR42-int LTR ERVK -3259 2263 2045 6 1682 730 97 0 42 chr4 143904471 143904589 -11725531 - B1_Mus2 SINE Alu -5 142 30 6 1682 264 250 31 0 chr4 143904666 143904730 -11725390 - RLTR42-int LTR ERVK -3658 1864 1799 6 1682 1122 243 103 58 chr4 143905312 143905509 -11724611 - RLTR18-int LTR ERVK -1788 3573 3373 6 1682 1485 67 6 0 chr4 143905509 143905687 -11724433 + B2_Mm1t SINE B2 1 179 -14 6 1682 1122 243 103 58 chr4 143905687 143905869 -11724251 - RLTR18-int LTR ERVK -1989 3372 3177 6 1682 689 259 17 17 chr4 143905863 143906040 -11724080 - RLTR18-int LTR ERVK -2359 3002 2826 6 1682 275 176 0 0 chr4 143906431 143906482 -11723638 - RLTR18-int LTR ERVK -5145 216 166 6 1682 948 180 0 7 chr4 143906490 143906641 -11723479 - B1_Mur4 SINE Alu 0 150 1 6 1682 444 250 112 25 chr4 143906645 143906805 -11723315 - RLTR18-int LTR ERVK -5185 176 3 6 1682 1507 158 201 14 chr4 143906860 143907214 -11722906 - RLTR18 LTR ERVK -48 568 149 6 1682 257 91 0 0 chr4 143907249 143907282 -11722838 - RLTR18 LTR ERVK -436 180 148 6 1682 768 195 69 58 chr4 143907286 143907460 -11722660 - RLTR18 LTR ERVK -436 180 5 6 1682 677 177 86 65 chr4 143907893 143908032 -11722088 + B1_Mur4 SINE Alu 1 142 -8 6 1682 856 112 152 24 chr4 143908196 143908361 -11721759 + B2_Mm2 SINE B2 3 188 -7 6 1682 327 276 35 0 chr4 143908395 143908482 -11721638 + PB1D9 SINE Alu 31 120 0 6 1682 288 0 0 0 chr4 143908950 143908982 -11721138 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1682 391 281 81 7 chr4 143908982 143909118 -11721002 - B1F SINE Alu 0 149 4 6 1682 281 234 15 30 chr4 143909404 143909470 -11720650 + B1F1 SINE Alu 48 112 -37 6 1682 21 36 0 0 chr4 143909667 143909695 -11720425 + AT_rich Low_complexity Low_complexity 1 28 0 6 1682 1057 180 30 0 chr4 143909742 143909942 -11720178 + RLTR14 LTR ERV1 4 209 -173 6 1682 1539 64 11 0 chr4 143909965 143910153 -11719967 - B2_Mm1t SINE B2 -3 190 1 6 1682 1549 64 16 0 chr4 143910156 143910343 -11719777 - B2_Mm2 SINE B2 -2 193 4 6 1682 519 326 21 0 chr4 143911622 143911766 -11718354 - B1_Mur2 SINE Alu 0 149 3 6 1682 204 193 0 0 chr4 143912119 143912143 -11717977 + T-rich Low_complexity Low_complexity 34 57 0 6 1682 1104 84 28 0 chr4 143912143 143912286 -11717834 - B1_Mus2 SINE Alu 0 147 1 6 1682 204 193 0 0 chr4 143912286 143912318 -11717802 + T-rich Low_complexity Low_complexity 2 33 0 6 1682 1785 26 0 0 chr4 143912322 143912514 -11717606 - B2_Mm1a SINE B2 0 193 2 6 1682 22 0 0 0 chr4 143912606 143912628 -11717492 + AT_rich Low_complexity Low_complexity 1 22 0 6 1682 700 266 16 2 chr4 143912683 143912873 -11717247 - B3A SINE B2 0 216 20 6 1682 1204 50 0 7 chr4 143912929 143913071 -11717049 + B1_Mm SINE Alu 1 141 -6 7 1682 1007 77 0 7 chr4 143913073 143913216 -11716904 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 7 1682 417 305 48 28 chr4 143913276 143913421 -11716699 + B1F SINE Alu 2 149 0 7 1682 553 313 12 40 chr4 143913469 143913642 -11716478 + ID_B1 SINE B4 26 193 -31 7 1682 764 264 19 24 chr4 143913677 143913890 -11716230 + B3 SINE B2 5 216 0 7 1682 1773 222 100 18 chr4 143914052 143914560 -11715560 - Lx9 LINE L1 -57 7587 7038 7 1682 185 94 0 30 chr4 143914844 143914877 -11715243 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 7 1682 211 308 62 0 chr4 143915031 143915096 -11715024 - B1F SINE Alu -52 97 29 7 1682 215 31 31 0 chr4 143915134 143915166 -11714954 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1682 823 64 9 0 chr4 143915170 143915280 -11714840 - B1_Mm SINE Alu 0 147 37 7 1682 377 269 139 51 chr4 143915501 143915638 -11714482 - B1_Mur1 SINE Alu 0 149 1 7 1682 1327 93 23 0 chr4 143915799 143915971 -11714149 + B2_Mm2 SINE B2 3 178 -17 7 1682 1002 33 0 0 chr4 143915971 143916093 -11714027 + (GAAA)n Simple_repeat Simple_repeat 1 122 0 7 1682 1163 37 81 0 chr4 143916304 143916440 -11713680 - B1_Mm SINE Alu 0 147 1 7 1682 278 318 47 0 chr4 143916519 143916626 -11713494 + PB1D7 SINE Alu 1 112 -8 7 1682 189 196 0 0 chr4 143916646 143916692 -11713428 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 1683 273 304 39 31 chr4 143917132 143917261 -11712859 - B1F1 SINE Alu -10 139 10 7 1683 309 221 71 40 chr4 143917294 143917393 -11712727 - PB1D7 SINE Alu -1 119 18 7 1683 370 356 65 25 chr4 143917851 143918050 -11712070 - ID_B1 SINE B4 -17 207 1 7 1683 590 264 81 25 chr4 143918071 143918269 -11711851 + B3 SINE B2 2 210 -6 7 1683 978 132 7 27 chr4 143918593 143918741 -11711379 - B1_Mus1 SINE Alu -3 145 1 7 1683 284 324 78 0 chr4 143919157 143919259 -11710861 - B1F2 SINE Alu -38 111 2 7 1683 394 111 0 73 chr4 143919346 143919414 -11710706 + PB1D9 SINE Alu 57 119 -1 7 1683 728 214 7 7 chr4 143919533 143919674 -11710446 + B1_Mm SINE Alu 1 141 -6 7 1683 761 187 63 21 chr4 143920628 143920770 -11709350 + B1_Mur4 SINE Alu 2 149 -1 7 1683 195 42 0 0 chr4 143922027 143922051 -11708069 + (TTA)n Simple_repeat Simple_repeat 1 24 0 7 1683 700 110 0 0 chr4 143922051 143922151 -11707969 - L1_Mus1 LINE L1 -10 6557 6458 7 1683 989 94 16 0 chr4 143923368 143923495 -11706625 + B1_Mus1 SINE Alu 2 130 -18 7 1683 233 78 14 72 chr4 143923514 143923583 -11706537 + A-rich Low_complexity Low_complexity 1 65 0 7 1683 588 192 64 0 chr4 143924204 143924329 -11705791 + B1_Mur4 SINE Alu 6 138 -12 7 1683 404 0 0 38 chr4 143924329 143924382 -11705738 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1683 813 118 50 0 chr4 143924658 143924777 -11705343 - B1_Mus2 SINE Alu -21 126 2 7 1683 205 191 0 0 chr4 143924853 143924895 -11705225 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1683 1041 39 8 0 chr4 143925122 143925252 -11704868 + B1_Mm SINE Alu 17 147 0 7 1683 237 132 0 0 chr4 143925252 143925290 -11704830 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1683 348 292 32 24 chr4 143925967 143926090 -11704030 + ID_B1 SINE B4 90 213 -11 7 1683 306 0 0 0 chr4 143926614 143926648 -11703472 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1683 867 246 30 20 chr4 143926760 143926959 -11703161 + B3 SINE B2 2 202 -14 7 1683 1281 48 0 20 chr4 143926982 143927131 -11702989 - B1_Mm SINE Alu -1 146 1 7 1683 562 285 26 26 chr4 143927380 143927535 -11702585 - B3A SINE B2 -42 156 2 7 1683 531 266 8 0 chr4 143927542 143927666 -11702454 - B1_Mur1 SINE Alu -6 143 19 7 1683 571 277 36 0 chr4 143927775 143927912 -11702208 - B1_Mur2 SINE Alu -7 142 1 7 1683 1414 97 27 0 chr4 143928008 143928194 -11701926 - B2_Mm1t SINE B2 -2 191 1 7 1683 311 322 0 0 chr4 143928211 143928298 -11701822 - ID_B1 SINE B4 -15 209 123 7 1683 711 254 148 27 chr4 143928298 143928561 -11701559 - Lx4B LINE L1 -1 6999 6705 7 1683 3442 165 39 3 chr4 143928558 143929249 -11700871 - Lx4B LINE L1 -822 6236 5515 7 1683 3540 98 35 70 chr4 143929249 143929528 -11700592 + RLTR22_Mur LTR ERVK 1 271 -1577 7 1683 1380 82 32 5 chr4 143929528 143929713 -11700407 - B2_Mm2 SINE B2 -5 190 1 7 1683 3540 98 35 70 chr4 143929713 143929766 -11700354 + RLTR22_Mur LTR ERVK 272 307 -1541 7 1683 1246 42 0 14 chr4 143929766 143929910 -11700210 - B1_Mus2 SINE Alu -3 144 3 7 1683 3540 98 35 70 chr4 143929910 143930204 -11699916 + RLTR22_Mur LTR ERVK 308 606 -1242 7 1683 811 101 101 0 chr4 143930201 143930330 -11699790 - B2_Mm2 SINE B2 0 195 54 7 1683 2235 64 30 20 chr4 143930347 143930651 -11699469 - IAPLTR2b LTR ERVK -20 307 1 7 1683 445 103 0 0 chr4 143930651 143930708 -11699412 - B2_Mm2 SINE B2 -136 59 3 7 1683 1542 81 5 9 chr4 143930708 143930931 -11699189 + RLTR22_Mur LTR ERVK 592 813 -1035 7 1683 274 297 74 92 chr4 143931180 143931343 -11698777 + RMER12 LTR ERVK 1161 1320 -2 7 1683 3660 152 13 66 chr4 143931345 143931592 -11698528 - Lx4B LINE L1 -356 5521 5296 7 1683 1265 61 0 0 chr4 143931592 143931739 -11698381 - B1_Mm SINE Alu 0 147 1 7 1683 3660 152 13 66 chr4 143931739 143932237 -11697883 - Lx4B LINE L1 -582 5295 4815 7 1683 331 251 17 27 chr4 143932733 143932820 -11697300 + PB1D10 SINE Alu 27 119 -8 7 1683 25 31 0 0 chr4 143932851 143932883 -11697237 + AT_rich Low_complexity Low_complexity 1 32 0 7 1683 323 248 76 38 chr4 143933014 143933119 -11697001 + RSINE1 SINE B4 13 121 -44 7 1683 749 203 7 15 chr4 143933121 143933256 -11696864 + B1_Mur2 SINE Alu 3 136 -13 7 1683 224 30 0 29 chr4 143933263 143933297 -11696823 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 1683 273 228 0 0 chr4 143933345 143933424 -11696696 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1683 239 141 12 93 chr4 143933806 143933857 -11696263 + T-rich Low_complexity Low_complexity 39 82 0 7 1683 1180 92 0 0 chr4 143933857 143933999 -11696121 - B1_Mus1 SINE Alu -6 142 1 7 1683 239 141 12 93 chr4 143933999 143934033 -11696087 + T-rich Low_complexity Low_complexity 4 38 0 7 1683 411 21 0 0 chr4 143934037 143934085 -11696035 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1683 3038 55 0 3 chr4 143934672 143935019 -11695101 + ORR1A1 LTR MaLR 1 346 0 7 1683 1098 175 94 178 chr4 143936209 143936373 -11693747 + ORR1A3 LTR MaLR 36 231 -163 7 1683 1155 83 0 7 chr4 143936373 143936519 -11693601 + B1_Mus1 SINE Alu 2 146 -2 7 1683 1141 131 23 40 chr4 143936519 143936737 -11693383 + ORR1A3 LTR MaLR 144 386 -8 7 1683 33985 80 8 9 chr4 143937537 143940695 -11689425 - L1Md_F2 LINE L1 0 6582 3419 7 1683 1809 21 0 0 chr4 143940695 143940887 -11689233 - B2_Mm1t SINE B2 -1 192 1 7 1683 33985 83 11 9 chr4 143940887 143942222 -11687898 - L1Md_F2 LINE L1 -2465 3418 2064 7 1683 4825 69 0 2 chr4 143942222 143942806 -11687314 - L1Md_F2 LINE L1 -7 6575 5993 7 1683 33985 83 11 9 chr4 143942806 143943173 -11686947 - L1Md_F2 LINE L1 -3820 2063 1718 7 1683 2965 58 14 5 chr4 143943173 143943540 -11686580 - L1Md_F2 LINE L1 -4 6578 6209 7 1683 33985 94 4 6 chr4 143943540 143944877 -11685243 - L1Md_F2 LINE L1 -4166 1717 386 7 1683 3573 136 27 0 chr4 143945620 143946172 -11683948 - RMER2 LTR ERV1 0 567 1 7 1683 264 236 19 0 chr4 143946172 143946278 -11683842 - ORR1A3-int LTR MaLR -1075 888 781 7 1683 315 325 79 0 chr4 143946211 143946325 -11683795 - B1_Mus2 SINE Alu -21 126 4 7 1683 238 260 68 68 chr4 143946235 143946338 -11683782 - MT2B LTR ERVL -344 257 155 7 1683 235 280 109 10 chr4 143946344 143946357 -11683763 - PB1D9 SINE Alu -1 119 11 7 1683 429 212 0 12 chr4 143946357 143946443 -11683677 - MT2B LTR ERVL -342 259 175 7 1683 257 274 0 152 chr4 143946358 143946496 -11683624 - RLTR25A LTR ERVK -527 576 460 7 1683 934 186 50 10 chr4 143946459 143946660 -11683460 - ORR1A3-int LTR MaLR -1414 549 341 7 1683 350 330 20 0 chr4 143947038 143947138 -11682982 + B1_Mur2 SINE Alu 1 102 -47 7 1683 1385 124 0 0 chr4 143947446 143947640 -11682480 - B2_Mm2 SINE B2 0 195 2 7 1683 212 154 0 0 chr4 143948429 143948468 -11681652 + A-rich Low_complexity Low_complexity 5 43 0 7 1683 1181 55 0 7 chr4 143948514 143948662 -11681458 + B1_Mus2 SINE Alu 1 147 0 7 1683 1225 182 6 1 chr4 143948819 143949088 -11681032 + ORR1A2 LTR MaLR 9 316 -13 7 1683 2900 186 85 32 chr4 143949098 143949515 -11680605 + ORR1A2-int LTR MaLR 2 435 -1528 7 1683 399 41 0 0 chr4 143949515 143949564 -11680556 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1683 2900 186 85 32 chr4 143949564 143949842 -11680278 + ORR1A2-int LTR MaLR 436 733 -1230 7 1683 756 200 93 12 chr4 143949717 143949889 -11680231 + MT2B LTR ERVL 32 217 -384 7 1683 217 293 85 0 chr4 143949989 143950071 -11680049 - PB1D10 SINE Alu -27 90 2 7 1683 2555 102 6 3 chr4 143950130 143950493 -11679627 - L1_Mus3 LINE L1 0 6638 6275 7 1683 956 92 7 0 chr4 143950854 143950995 -11679125 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 7 1683 558 265 22 0 chr4 143951003 143951139 -11678981 - B1_Mur4 SINE Alu -7 143 5 7 1683 236 346 62 0 chr4 143954020 143954101 -11676019 - PB1D10 SINE Alu -31 86 1 7 1683 23 0 0 0 chr4 143954305 143954328 -11675792 + AT_rich Low_complexity Low_complexity 1 23 0 7 1683 357 282 8 57 chr4 143954384 143954508 -11675612 + RSINE1 SINE B4 10 127 -38 7 1683 222 281 0 15 chr4 143954685 143954750 -11675370 + B3A SINE B2 1 64 -134 7 1683 1130 88 0 20 chr4 143954983 143955133 -11674987 - B1_Mus2 SINE Alu 0 147 1 7 1683 393 250 38 23 chr4 143955180 143955311 -11674809 - B4A SINE B4 -1 291 159 7 1683 5950 84 16 93 chr4 143955430 143956397 -11673723 + RLTR13B1 LTR ERVK 1 893 0 7 1683 521 239 0 25 chr4 143956702 143956822 -11673298 + PB1D10 SINE Alu 1 117 0 7 1683 233 234 0 15 chr4 143956872 143956937 -11673183 + ID_B1 SINE B4 80 143 -81 7 1683 287 203 0 0 chr4 143956879 143956938 -11673182 + PB1 SINE Alu 6 64 -63 7 1683 21 36 0 0 chr4 143956982 143957010 -11673110 + AT_rich Low_complexity Low_complexity 1 28 0 7 1683 292 231 46 0 chr4 143957020 143957085 -11673035 + PB1D9 SINE Alu 4 71 -49 7 1683 1018 119 0 19 chr4 143957087 143957249 -11672871 + B2_Mm2 SINE B2 13 171 -24 7 1683 361 35 17 0 chr4 143957287 143957345 -11672775 + B2_Mm1a SINE B2 127 185 -8 8 1683 415 198 152 83 chr4 143957355 143957378 -11672742 + B1_Mus1 SINE Alu 7 31 -117 8 1683 1634 96 0 0 chr4 143957378 143957598 -11672522 - L1_Mus2 LINE L1 0 6566 6347 8 1683 415 198 152 83 chr4 143957598 143957706 -11672414 + B1_Mus1 SINE Alu 32 146 -2 8 1683 2671 262 77 31 chr4 143957754 143958773 -11671347 + Lx5 LINE L1 5746 6852 -198 8 1683 1202 55 7 0 chr4 143958866 143959012 -11671108 - B1_Mm SINE Alu 0 147 1 8 1683 1290 123 0 0 chr4 143959016 143959203 -11670917 - B2_Mm2 SINE B2 -7 188 2 8 1683 6859 126 34 4 chr4 143959205 143960645 -11669475 - Lx LINE L1 -4 6650 5176 8 1683 566 294 261 8 chr4 143960657 143961056 -11669064 + Lx8 LINE L1 6822 7322 -151 8 1683 498 346 48 5 chr4 143961057 143961243 -11668877 - B3 SINE B2 -15 201 8 8 1683 481 277 39 0 chr4 143961439 143961594 -11668526 + RSINE1 SINE B4 3 163 -2 8 1683 425 329 24 42 chr4 143961658 143961826 -11668294 + B3A SINE B2 11 175 -23 8 1683 704 258 34 15 chr4 143962028 143962233 -11667887 + B3 SINE B2 1 209 -7 8 1683 729 248 0 13 chr4 143963659 143963810 -11666310 + B1_Mur2 SINE Alu 1 149 0 8 1683 3038 44 0 0 chr4 143964005 143964368 -11665752 - L1_Mus1 LINE L1 0 6567 6205 8 1683 593 206 13 76 chr4 143964368 143964513 -11665607 + B1_Mur4 SINE Alu 2 136 -14 8 1683 450 0 0 0 chr4 143964513 143964563 -11665557 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1683 593 206 13 76 chr4 143964563 143964575 -11665545 + B1_Mur4 SINE Alu 137 148 -2 8 1683 481 279 0 32 chr4 143964635 143964761 -11665359 + RSINE1 SINE B4 8 129 -36 8 1683 489 198 136 32 chr4 143964830 143964955 -11665165 + B1_Mur4 SINE Alu 12 149 -1 8 1683 481 276 115 49 chr4 143964993 143965176 -11664944 + B3 SINE B2 20 214 -2 8 1683 3487 74 19 33 chr4 143965258 143965745 -11664375 + RLTR45 LTR ERVK 3 482 0 8 1683 213 65 0 0 chr4 143966166 143966197 -11663923 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1683 1137 68 0 20 chr4 143966197 143966347 -11663773 - B1_Mus2 SINE Alu 0 147 1 8 1683 232 191 0 21 chr4 143968158 143968206 -11661914 + B1_Mus1 SINE Alu 6 52 -96 8 1683 617 269 120 0 chr4 143968210 143968377 -11661743 + B3 SINE B2 2 188 -28 8 1683 215 174 43 0 chr4 143968390 143968436 -11661684 + B1_Mur4 SINE Alu 98 145 -5 8 1683 235 341 24 0 chr4 143968426 143968511 -11661609 + ID_B1 SINE B4 118 204 -20 8 1683 666 172 117 0 chr4 143968856 143968984 -11661136 - B1_Mus2 SINE Alu 0 147 5 8 1683 360 43 0 0 chr4 143969080 143969126 -11660994 + (TATG)n Simple_repeat Simple_repeat 3 48 0 8 1683 315 223 85 113 chr4 143969127 143969269 -11660851 - B1_Mus2 SINE Alu -7 142 1 8 1683 271 250 0 16 chr4 143969319 143969380 -11660740 - PB1D7 SINE Alu -15 105 46 8 1683 1357 92 16 0 chr4 143969499 143969683 -11660437 + B2_Mm2 SINE B2 2 188 -7 8 1683 541 226 73 0 chr4 143969714 143969851 -11660269 - B1F2 SINE Alu 0 149 3 8 1683 354 318 57 50 chr4 143969851 143969869 -11660251 - B4 SINE B4 -63 225 70 8 1683 377 218 58 0 chr4 143969912 143969999 -11660121 + B1F1 SINE Alu 38 129 -20 8 1683 445 267 26 8 chr4 143970281 143970398 -11659722 + B3 SINE B2 30 148 -68 8 1683 318 294 25 0 chr4 143970576 143970695 -11659425 - RMER15 LTR ERVL -90 485 364 8 1683 220 313 121 0 chr4 143971000 143971083 -11659037 - B1F1 SINE Alu -47 102 10 8 1683 505 250 33 0 chr4 143971111 143971231 -11658889 + B1_Mm SINE Alu 1 124 -23 8 1683 509 212 8 34 chr4 143971307 143971424 -11658696 + PB1D9 SINE Alu 1 114 -6 8 1683 271 292 52 26 chr4 143971433 143971549 -11658571 + B2_Mm2 SINE B2 1 119 -76 8 1683 219 240 40 0 chr4 143971593 143971643 -11658477 + B1F SINE Alu 90 141 -8 8 1683 395 244 244 0 chr4 143972297 143972416 -11657704 + ID_B1 SINE B4 68 215 -9 8 1683 293 279 103 11 chr4 143972421 143972508 -11657612 + RSINE1 SINE B4 3 97 -68 8 1683 640 177 32 8 chr4 143972558 143972683 -11657437 + B3 SINE B2 8 135 -81 8 1683 365 58 0 19 chr4 143972683 143972736 -11657384 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1683 372 282 97 0 chr4 143973202 143973326 -11656794 + B1_Mur1 SINE Alu 6 141 -8 8 1683 675 194 8 8 chr4 143973465 143973595 -11656525 + B1_Mur3 SINE Alu 14 143 -6 8 1683 231 291 12 25 chr4 143973775 143973856 -11656264 - ID_B1 SINE B4 -23 201 122 8 1683 764 192 144 5 chr4 143973865 143974053 -11656067 - URR1A DNA MER1_type -6 220 7 8 1683 469 298 8 0 chr4 143974167 143974291 -11655829 - ID_B1 SINE B4 -20 204 80 8 1683 416 249 6 39 chr4 143974355 143974535 -11655585 - MER34B-int LTR ERV1 -2219 3137 2964 8 1683 482 276 38 109 chr4 143974694 143974738 -11655382 - B3A SINE B2 -1 197 154 8 1683 375 23 0 0 chr4 143974738 143974782 -11655338 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1683 482 276 38 109 chr4 143974782 143974948 -11655172 - B3A SINE B2 -45 153 2 8 1683 435 193 0 0 chr4 143975390 143975473 -11654647 - B1_Mur3 SINE Alu -66 83 1 8 1683 348 219 27 0 chr4 143975572 143975645 -11654475 + B1_Mur4 SINE Alu 7 81 -69 8 1683 231 114 0 0 chr4 143975798 143975842 -11654278 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1683 726 170 0 14 chr4 143975868 143976011 -11654109 - B1_Mur4 SINE Alu 0 150 10 8 1683 305 298 26 96 chr4 143975871 143976027 -11654093 - B4 SINE B4 -69 223 79 8 1683 465 66 0 0 chr4 143976061 143976122 -11653998 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1683 264 59 0 0 chr4 143976423 143976457 -11653663 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 8 1683 382 198 121 0 chr4 143976520 143976611 -11653509 - RSINE1 SINE B4 -53 112 11 8 1683 430 258 8 50 chr4 143976828 143976960 -11653160 + B1_Mur3 SINE Alu 2 120 0 8 1683 1481 49 6 0 chr4 143977265 143977448 -11652672 - L1_Mus3 LINE L1 -750 5888 5705 8 1683 1308 59 0 0 chr4 143977448 143977618 -11652502 + L1_Mus2 LINE L1 6397 6566 0 8 1683 396 271 65 0 chr4 143977750 143977857 -11652263 - B1_Mur1 SINE Alu -34 115 2 8 1683 234 308 57 57 chr4 143977857 143977891 -11652229 - ID_B1 SINE B4 -31 193 53 8 1683 439 289 40 24 chr4 143977964 143978088 -11652032 - RSINE1 SINE B4 -33 132 7 8 1683 248 148 0 0 chr4 143978226 143978275 -11651845 + PB1D9 SINE Alu 18 66 -83 8 1683 266 291 63 71 chr4 143978249 143978375 -11651745 - RSINE1 SINE B4 -39 126 2 8 1683 651 13 0 0 chr4 143978605 143978681 -11651439 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1683 518 240 116 0 chr4 143978704 143978825 -11651295 - B1_Mur2 SINE Alu -11 138 4 8 1683 321 100 0 0 chr4 143978873 143978923 -11651197 + (T)n Simple_repeat Simple_repeat 1 50 0 8 1683 285 152 225 12 chr4 143978983 143979063 -11651057 - PB1D10 SINE Alu -20 97 1 8 1683 236 284 173 0 chr4 143979086 143979167 -11650953 - ID_B1 SINE B4 -34 190 96 8 1683 198 148 18 36 chr4 143979210 143979266 -11650854 + CT-rich Low_complexity Low_complexity 6 60 0 8 1683 2165 145 94 192 chr4 143979324 143979971 -11650149 - MT2B2 LTR ERVL 0 584 1 8 1683 722 281 19 23 chr4 143979995 143980210 -11649910 - B3 SINE B2 -1 215 2 8 1683 225 108 0 0 chr4 143980282 143980319 -11649801 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1683 1357 87 11 0 chr4 143980589 143980773 -11649347 + B2_Mm1a SINE B2 1 186 -7 8 1683 553 234 14 14 chr4 143980834 143980977 -11649143 + B1_Mur2 SINE Alu 5 147 -2 8 1683 846 112 235 7 chr4 143980997 143981150 -11648970 + B2_Mm2 SINE B2 2 189 -6 8 1683 563 227 42 14 chr4 143981397 143981540 -11648580 + B1_Mur2 SINE Alu 2 148 -1 8 1683 250 318 48 0 chr4 143981638 143981701 -11648419 + BC1_Mm scRNA scRNA 5 70 -82 8 1683 301 263 0 0 chr4 143981652 143981709 -11648411 + ID SINE ID 23 79 -145 8 1683 3493 148 88 3 chr4 143983158 143983782 -11646338 - Lx2B LINE L1 -440 6560 5884 8 1683 1873 217 13 59 chr4 143983765 143984220 -11645900 + Lx2B LINE L1 6547 6980 -20 8 1683 495 0 0 0 chr4 143984225 143984280 -11645840 + (TAA)n Simple_repeat Simple_repeat 2 56 0 8 1683 294 146 18 0 chr4 143986247 143986302 -11643818 + B1_Mm SINE Alu 92 147 0 8 1683 455 239 27 55 chr4 143986833 143986979 -11643141 + ID_B1 SINE B4 70 211 -13 8 1683 377 82 33 0 chr4 143987128 143987189 -11642931 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 8 1683 1799 158 139 16 chr4 143987566 143987932 -11642188 + Lx4A LINE L1 6647 7057 -1 8 1683 487 241 9 18 chr4 143987934 143988048 -11642072 + B3 SINE B2 30 142 -74 8 1683 1198 87 75 0 chr4 143988093 143988266 -11641854 - B2_Mm2 SINE B2 -7 188 3 8 1683 2615 87 47 19 chr4 143988554 143988977 -11641143 + MusHAL1 LINE L1 510 944 -1768 8 1683 274 310 0 0 chr4 143989096 143989183 -11640937 - PB1D10 SINE Alu -2 115 29 8 1683 21 57 0 0 chr4 143990041 143990076 -11640044 + AT_rich Low_complexity Low_complexity 1 35 0 8 1683 1952 173 12 69 chr4 143990236 143990450 -11639670 + RMER10B LTR ERVL 1 209 -189 8 1683 396 0 0 0 chr4 143990450 143990494 -11639626 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1683 1952 173 12 69 chr4 143990494 143990701 -11639419 + RMER10B LTR ERVL 210 398 0 8 1683 547 246 166 11 chr4 143990769 143990950 -11639170 - ID_B1 SINE B4 -14 210 2 8 1683 307 287 45 27 chr4 143991128 143991239 -11638881 + B4A SINE B4 7 119 -173 8 1683 2071 190 50 10 chr4 143991348 143991833 -11638287 + RLTR11A2 LTR ERVK 1 504 -23 8 1683 500 181 95 0 chr4 143992139 143992255 -11637865 + B3 SINE B2 8 134 -82 9 1683 1355 80 32 0 chr4 143992268 143992455 -11637665 - B2_Mm1t SINE B2 0 193 1 9 1683 281 262 0 0 chr4 143992878 143992939 -11637181 - B4A SINE B4 -151 141 81 9 1683 341 102 0 17 chr4 143992941 143993001 -11637119 + (TTA)n Simple_repeat Simple_repeat 3 61 0 9 1683 870 245 11 5 chr4 143993005 143993194 -11636926 - ID_B1 SINE B4 -21 203 14 9 1683 1071 176 37 55 chr4 143993524 143993893 -11636227 + RMER17C LTR ERVK 15 439 -519 9 1683 1121 113 90 0 chr4 143993905 143994082 -11636038 - B2_Mm1t SINE B2 0 193 1 9 1683 670 212 101 18 chr4 143994134 143994302 -11635818 + RMER17C-int LTR ERVK 7 188 -3050 9 1683 965 194 173 54 chr4 143995045 143995475 -11634645 + RMER17C-int LTR ERVK 1508 1988 -1250 9 1683 778 174 40 6 chr4 143995474 143995647 -11634473 + RMER17C-int LTR ERVK 2164 2342 -896 9 1683 1868 122 260 24 chr4 143995645 143996216 -11633904 + RMER17C-int LTR ERVK 2533 3238 0 9 1683 639 154 99 21 chr4 143996219 143996471 -11633649 + RMER17C LTR ERVK 25 313 -645 9 1683 1163 69 0 7 chr4 143996588 143996734 -11633386 - B1_Mus2 SINE Alu -2 145 1 9 1683 526 292 35 7 chr4 143996748 143996893 -11633227 - B1_Mur3 SINE Alu 0 149 1 9 1683 268 78 0 89 chr4 143996950 143997006 -11633114 - B1_Mur4 SINE Alu 0 150 100 9 1683 325 284 198 0 chr4 143997007 143997057 -11633063 + B1F SINE Alu 4 142 -7 9 1683 346 200 0 15 chr4 143997057 143997123 -11632997 + ID_B1 SINE B4 153 217 -7 9 1683 484 206 28 9 chr4 143997378 143997486 -11632634 + B3 SINE B2 105 214 -2 9 1683 569 239 44 22 chr4 143997570 143997707 -11632413 + B1_Mur4 SINE Alu 2 141 -9 9 1683 474 219 50 8 chr4 143997756 143997876 -11632244 + B1_Mur2 SINE Alu 18 142 -7 9 1683 318 198 240 0 chr4 143997919 143998015 -11632105 + PB1D9 SINE Alu 2 120 0 9 1683 255 189 0 19 chr4 143998646 143998700 -11631420 - ID_B1 SINE B4 0 224 172 9 1683 204 40 0 0 chr4 143998719 143998744 -11631376 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1683 1669 203 73 105 chr4 143998804 143999025 -11631095 - RLTR18B LTR ERVK 0 512 300 9 1683 1187 50 0 0 chr4 143999025 143999164 -11630956 + B1_Mus2 SINE Alu 2 140 -7 9 1683 1669 203 73 105 chr4 143999164 143999465 -11630655 - RLTR18B LTR ERVK -213 299 7 9 1683 478 181 9 9 chr4 143999894 144000000 -11630120 - RMER17C LTR ERVK 0 410 305 9 1683 1203 186 30 26 chr4 144000000 144000303 -11629817 - RMER17C LTR ERVK -106 304 1 1 1683 277 48 0 15 chr4 144000306 144000353 -11629767 + B1_Mus1 SINE Alu 1 44 -83 2 1683 615 174 0 0 chr4 144000453 144000568 -11629552 + T-rich Low_complexity Low_complexity 1 115 0 3 1683 619 202 16 0 chr4 144000589 144000718 -11629402 - ID_B1 SINE B4 0 224 98 4 1683 263 122 20 0 chr4 144001212 144001261 -11628859 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 5 1683 900 92 0 8 chr4 144001266 144001398 -11628722 - B2_Mm2 SINE B2 -63 132 2 6 1683 597 40 0 0 chr4 144001499 144001575 -11628545 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 1683 466 228 38 61 chr4 144001579 144001615 -11628505 - B1_Mur1 SINE Alu -17 132 99 8 1683 3956 40 13 11 chr4 144001615 144002089 -11628031 - MT2C_Mm LTR ERVL 0 475 1 9 1683 466 228 38 61 chr4 144002089 144002183 -11627937 - B1_Mur1 SINE Alu -51 98 5 8 1683 668 35 0 11 chr4 144002297 144002385 -11627735 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1 1683 422 238 28 9 chr4 144002397 144002503 -11627617 - MTE2b LTR MaLR -271 108 1 1 1683 420 121 20 20 chr4 144002648 144002749 -11627371 + CT-rich Low_complexity Low_complexity 4 104 0 1 1683 690 333 20 0 chr4 144003108 144003312 -11626808 - ID_B1 SINE B4 -15 209 2 1 1683 779 175 51 78 chr4 144003630 144003847 -11626273 + RMER12B LTR ERVK 985 1195 -209 1 1683 285 75 0 0 chr4 144003850 144003890 -11626230 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1683 385 182 263 0 chr4 144003909 144004008 -11626112 + RLTR21 LTR ERVK 1438 1562 -10 1 1683 598 180 0 0 chr4 144004011 144004111 -11626009 + MTC LTR MaLR 314 413 -8 1 1683 767 108 8 0 chr4 144004267 144004387 -11625733 + (GAAA)n Simple_repeat Simple_repeat 3 123 0 1 1683 188 289 0 0 chr4 144005030 144005075 -11625045 - L2b LINE L2 -1 3374 3330 1 1683 333 0 0 0 chr4 144005687 144005724 -11624396 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 2 1683 303 240 0 0 chr4 144006266 144006370 -11623750 + (TGGA)n Simple_repeat Simple_repeat 3 106 0 2 1683 527 163 0 14 chr4 144006363 144006506 -11623614 + (TATATG)n Simple_repeat Simple_repeat 1 141 0 2 1683 459 35 0 0 chr4 144006508 144006565 -11623555 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 2 1683 514 217 36 36 chr4 144006943 144007053 -11623067 + RSINE1 SINE B4 39 148 -17 2 1683 23 0 0 0 chr4 144007077 144007100 -11623020 + AT_rich Low_complexity Low_complexity 1 23 0 2 1683 210 163 0 23 chr4 144007461 144007505 -11622615 + MIR SINE MIR 108 150 -112 2 1683 723 253 38 0 chr4 144007525 144007683 -11622437 + RSINE1 SINE B4 2 165 0 2 1683 688 232 203 37 chr4 144007711 144008006 -11622114 + MTEa LTR MaLR 1 344 -35 2 1683 566 100 11 43 chr4 144008565 144008659 -11621461 + B1_Mur4 SINE Alu 5 95 -55 2 1683 1136 51 0 0 chr4 144008959 144009096 -11621024 - B1_Mm SINE Alu -9 138 2 3 1683 203 284 80 13 chr4 144009184 144009259 -11620861 + L2b LINE L2 3240 3319 -56 3 1683 526 230 92 43 chr4 144010889 144011030 -11619090 - B1_Mur4 SINE Alu 0 150 3 3 1683 261 0 0 0 chr4 144011067 144011096 -11619024 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 1683 189 0 0 0 chr4 144011096 144011117 -11619003 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1683 579 216 29 146 chr4 144011117 144011323 -11618797 - B3A SINE B2 -16 182 1 3 1683 393 250 32 77 chr4 144011822 144011978 -11618142 - RMER5 LTR ERV1 0 534 386 3 1683 302 265 24 12 chr4 144012057 144012141 -11617979 - RSINE1 SINE B4 0 165 81 3 1683 595 279 0 7 chr4 144012235 144012383 -11617737 - B1_Mur1 SINE Alu 0 149 3 3 1683 285 29 0 0 chr4 144012408 144012442 -11617678 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1683 1164 52 0 0 chr4 144012450 144012603 -11617517 - B2_Mm2 SINE B2 -41 154 2 4 1683 894 265 80 12 chr4 144012624 144012960 -11617160 - RMER5 LTR ERV1 -143 391 33 3 1683 582 267 8 0 chr4 144013058 144013189 -11616931 + RSINE1 SINE B4 5 136 -29 4 1683 226 205 25 25 chr4 144013969 144014031 -11616089 + CT-rich Low_complexity Low_complexity 20 81 0 4 1683 964 76 28 34 chr4 144014031 144014208 -11615912 + (TTTCC)n Simple_repeat Simple_repeat 4 179 0 4 1683 226 205 25 25 chr4 144014208 144014225 -11615895 + polypyrimidine Low_complexity Low_complexity 3 19 0 4 1683 654 188 16 0 chr4 144014267 144014395 -11615725 - B3 SINE B2 -85 131 2 4 1683 871 176 0 105 chr4 144014438 144014647 -11615473 - URR1A DNA MER1_type -1 225 39 4 1683 303 93 0 0 chr4 144014719 144014762 -11615358 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 4 1683 919 138 28 0 chr4 144014778 144014923 -11615197 - B1_Mur4 SINE Alu -1 149 1 4 1683 664 271 114 32 chr4 144014925 144015320 -11614800 - L1MB3 LINE L1 -40 6140 5668 4 1683 1359 95 16 11 chr4 144015320 144015511 -11614609 - B2_Mm2 SINE B2 -2 193 2 5 1683 664 278 90 32 chr4 144015511 144015587 -11614533 - L1MB3 LINE L1 -516 5667 5593 4 1683 27 29 0 0 chr4 144015603 144015637 -11614483 + AT_rich Low_complexity Low_complexity 1 34 0 5 1683 414 0 0 0 chr4 144015641 144015687 -11614433 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1683 612 206 0 0 chr4 144015687 144015794 -11614326 - B3 SINE B2 -109 107 1 5 1683 911 221 85 5 chr4 144015889 144016089 -11614031 - B3 SINE B2 0 216 1 5 1683 346 26 0 0 chr4 144016199 144016237 -11613883 + L1Md_F2 LINE L1 5549 5586 -297 5 1683 8179 48 2 2 chr4 144016237 144017230 -11612890 + L1Md_F2 LINE L1 5587 6579 -3 5 1683 30 69 0 0 chr4 144017318 144017376 -11612744 + AT_rich Low_complexity Low_complexity 1 58 0 5 1683 429 298 8 24 chr4 144017376 144017500 -11612620 - B3A SINE B2 -76 122 1 5 1683 611 271 21 0 chr4 144017549 144017689 -11612431 - RSINE1 SINE B4 -10 155 13 5 1683 1350 90 32 5 chr4 144017823 144018012 -11612108 - B2_Mm2 SINE B2 -1 194 1 5 1683 432 0 0 0 chr4 144018028 144018076 -11612044 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1683 644 250 53 29 chr4 144018149 144018355 -11611765 - Lx9 LINE L1 -151 7493 7283 6 1683 462 170 36 0 chr4 144018363 144018475 -11611645 + CT-rich Low_complexity Low_complexity 1 116 0 6 1683 390 256 0 53 chr4 144018609 144018704 -11611416 - B1F SINE Alu -59 90 1 6 1683 268 272 62 19 chr4 144018711 144018872 -11611248 - L1M4c LINE L1 -2425 3951 3784 6 1683 667 201 137 66 chr4 144018875 144019072 -11611048 - B3 SINE B2 -5 211 1 6 1683 324 264 108 0 chr4 144019102 144019250 -11610870 - L1M4c LINE L1 -2576 3800 3637 6 1683 1264 0 10 59 chr4 144019250 144019738 -11610382 + (GAA)n Simple_repeat Simple_repeat 1 463 0 6 1683 303 274 45 75 chr4 144019744 144019878 -11610242 + B3 SINE B2 66 195 -21 6 1683 207 223 48 41 chr4 144019998 144020143 -11609977 + (TATATG)n Simple_repeat Simple_repeat 4 149 0 6 1683 253 278 31 90 chr4 144020484 144020617 -11609503 - B4A SINE B4 -130 162 38 6 1683 1129 219 170 13 chr4 144020618 144020984 -11609136 + MTD LTR MaLR 1 390 -31 7 1683 669 25 0 0 chr4 144021250 144021329 -11608791 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 1683 455 273 83 18 chr4 144021329 144021360 -11608760 - B3A SINE B2 -17 181 153 7 1683 222 118 0 0 chr4 144021360 144021394 -11608726 + (CATG)n Simple_repeat Simple_repeat 3 36 0 7 1683 455 273 83 18 chr4 144021394 144021530 -11608590 - B3A SINE B2 -46 152 3 7 1683 553 232 127 47 chr4 144021531 144021579 -11608541 - L1M4c LINE L1 -3313 3063 3003 6 1683 191 88 29 0 chr4 144021579 144021613 -11608507 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 7 1683 553 232 127 47 chr4 144021613 144021817 -11608303 - L1M4c LINE L1 -3374 3002 2792 6 1683 490 221 126 0 chr4 144021833 144021960 -11608160 - B1_Mur4 SINE Alu -7 143 1 7 1683 1521 59 0 11 chr4 144021967 144022156 -11607964 - B2_Mm2 SINE B2 -7 188 2 7 1683 734 215 125 5 chr4 144022199 144022391 -11607729 - B3 SINE B2 -1 215 1 7 1683 502 279 24 30 chr4 144022743 144022909 -11607211 + RSINE1 SINE B4 1 165 0 7 1683 237 65 0 0 chr4 144022923 144022954 -11607166 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 7 1683 709 216 0 7 chr4 144022954 144023089 -11607031 - B1_Mus2 SINE Alu -13 134 1 8 1683 217 307 53 0 chr4 144023117 144023192 -11606928 + ID4_ SINE ID 5 83 0 8 1683 345 125 0 0 chr4 144023561 144023617 -11606503 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1683 594 270 0 7 chr4 144023677 144023815 -11606305 - RSINE1 SINE B4 -20 145 9 8 1683 243 0 0 0 chr4 144023892 144023919 -11606201 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1683 633 248 161 45 chr4 144023921 144023997 -11606123 - L1M4c LINE L1 -4486 1898 1819 6 1683 1286 122 21 0 chr4 144023997 144024185 -11605935 - B2_Mm2 SINE B2 -3 192 1 8 1683 633 248 161 45 chr4 144024185 144024438 -11605682 - L1M4c LINE L1 -4566 1818 1531 6 1683 702 55 0 0 chr4 144024517 144024608 -11605512 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 8 1683 374 0 0 21 chr4 144024608 144024655 -11605465 + (TCC)n Simple_repeat Simple_repeat 2 47 0 8 1683 1058 230 0 9 chr4 144024685 144024896 -11605224 - B3 SINE B2 -6 210 2 8 1683 1086 78 35 0 chr4 144024915 144025057 -11605063 - B1_Mus1 SINE Alu 0 148 2 8 1683 232 312 84 65 chr4 144025194 144025216 -11604904 - B4 SINE B4 -44 248 92 9 1683 526 169 94 0 chr4 144025216 144025348 -11604772 - B1_Mur1 SINE Alu 0 149 7 9 1683 405 70 0 0 chr4 144025639 144025696 -11604424 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1683 389 292 26 9 chr4 144025745 144025859 -11604261 - PB1D10 SINE Alu -1 116 1 9 1683 428 248 79 0 chr4 144025959 144026060 -11604060 - B1_Mur1 SINE Alu -26 123 15 9 1683 252 0 0 0 chr4 144026707 144026735 -11603385 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1683 297 0 0 0 chr4 144027015 144027048 -11603072 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 9 1683 408 326 21 63 chr4 144027057 144027247 -11602873 - ID_B1 SINE B4 -30 194 13 9 1683 680 259 42 21 chr4 144027537 144027710 -11602410 + B3A SINE B2 13 190 -26 9 1683 324 0 0 0 chr4 144027710 144027746 -11602374 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 1683 621 259 42 21 chr4 144027746 144027761 -11602359 + B3 SINE B2 191 205 -11 9 1683 499 200 124 31 chr4 144027788 144027917 -11602203 - B3A SINE B2 -55 143 3 1 1683 548 165 73 9 chr4 144027951 144028061 -11602059 + B1_Mur4 SINE Alu 11 127 -23 1 1683 360 286 55 16 chr4 144028061 144028079 -11602041 + ID_B1 SINE B4 91 223 -1 1 1683 22 35 0 0 chr4 144028084 144028113 -11602007 + AT_rich Low_complexity Low_complexity 1 29 0 1 1683 4298 176 18 11 chr4 144028864 144030044 -11600076 - Lx2B LINE L1 -1 6653 5483 1 1683 212 378 33 16 chr4 144030141 144030262 -11599858 - MIR SINE MIR -81 181 59 1 1683 341 22 22 0 chr4 144030380 144030426 -11599694 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 1 1683 1793 163 12 9 chr4 144030461 144030789 -11599331 + ORR1B2 LTR MaLR 4 332 -35 1 1683 2937 205 9 38 chr4 144030794 144031373 -11598747 + Lx5 LINE L1 6474 7035 -15 1 1683 387 0 0 0 chr4 144031374 144031417 -11598703 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1683 284 250 0 16 chr4 144031736 144031797 -11598323 + ID4 SINE ID 11 70 -13 1 1683 202 297 13 26 chr4 144031798 144031874 -11598246 + GA-rich Low_complexity Low_complexity 4 78 0 1 1683 1004 252 0 5 chr4 144031934 144032145 -11597975 - B3 SINE B2 -5 211 2 1 1683 381 284 46 0 chr4 144032323 144032432 -11597688 + B3A SINE B2 51 164 -34 1 1683 749 233 5 102 chr4 144032506 144032721 -11597399 + B3A SINE B2 5 198 0 1 1683 567 53 0 0 chr4 144033037 144033112 -11597008 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1683 413 331 25 43 chr4 144033129 144033290 -11596830 - RSINE1 SINE B4 -3 162 5 1 1683 182 118 29 0 chr4 144033297 144033331 -11596789 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1683 287 124 277 131 chr4 144033398 144033528 -11596592 - B2_Mm2 SINE B2 0 195 47 1 1683 993 84 7 0 chr4 144033614 144033757 -11596363 - B2_Mm1t SINE B2 -15 178 35 1 1683 1995 68 101 3 chr4 144033856 144034153 -11595967 - MusHAL1 LINE L1 -630 2082 1757 1 1683 465 66 0 0 chr4 144034258 144034319 -11595801 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1683 674 255 0 0 chr4 144034321 144034466 -11595654 - B3A SINE B2 -51 147 3 1 1683 2925 109 5 0 chr4 144035256 144035661 -11594459 + MTB_Mm LTR MaLR 1 407 0 1 1683 630 79 0 0 chr4 144035785 144035874 -11594246 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1683 582 244 34 0 chr4 144035889 144036008 -11594112 - B3 SINE B2 -67 149 27 1 1683 1467 176 7 7 chr4 144036025 144036300 -11593820 - Lx4B LINE L1 0 7058 6784 1 1683 250 200 150 0 chr4 144036393 144036453 -11593667 + MER63D DNA AcHobo 302 370 -691 1 1683 877 300 107 19 chr4 144036456 144036925 -11593195 + MT2A LTR ERVL 1 510 -23 1 1683 297 223 203 31 chr4 144036989 144037216 -11592904 - Charlie1a DNA MER1_type -98 1357 1092 1 1683 880 159 14 20 chr4 144037247 144037395 -11592725 - B1_Mus1 SINE Alu 0 148 2 1 1683 665 217 14 27 chr4 144037504 144037651 -11592469 - B1_Mur2 SINE Alu 0 149 5 1 1683 267 324 60 40 chr4 144037797 144037948 -11592172 + MER21B LTR ERV1 218 371 -492 1 1683 403 333 16 0 chr4 144037998 144038124 -11591996 + RSINE1 SINE B4 2 129 -36 1 1683 228 100 0 0 chr4 144038442 144038482 -11591638 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1683 318 219 16 0 chr4 144038508 144038572 -11591548 - RSINE1 SINE B4 -22 143 79 1 1683 319 286 47 12 chr4 144039153 144039238 -11590882 - PB1D7 SINE Alu -32 88 1 1 1683 506 212 171 88 chr4 144039347 144039528 -11590592 + B3A SINE B2 1 196 -2 1 1683 279 236 23 0 chr4 144039604 144039691 -11590429 - ID2 SINE ID -44 108 18 1 1683 239 277 15 15 chr4 144039636 144039702 -11590418 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 1 1683 235 235 0 0 chr4 144039969 144040020 -11590100 - RSINE1 SINE B4 -103 62 12 1 1683 771 42 0 0 chr4 144040058 144040153 -11589967 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 1683 249 33 0 0 chr4 144040153 144040182 -11589938 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1683 704 205 105 7 chr4 144040270 144040422 -11589698 + B3A SINE B2 2 168 -30 1 1683 291 93 0 0 chr4 144040431 144040474 -11589646 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1683 3418 33 5 0 chr4 144040644 144041038 -11589082 + MTA_Mm LTR MaLR 1 396 0 1 1683 649 181 83 42 chr4 144041111 144041255 -11588865 + B1_Mur4 SINE Alu 1 150 0 1 1683 253 62 0 40 chr4 144041259 144041309 -11588811 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1683 523 229 23 83 chr4 144041318 144041427 -11588693 + PB1D9 SINE Alu 1 101 -48 1 1683 387 0 0 0 chr4 144041427 144041470 -11588650 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1683 458 229 23 83 chr4 144041470 144041493 -11588627 + B1_Mur3 SINE Alu 102 125 -24 1 1683 684 259 33 33 chr4 144041534 144041746 -11588374 + B3 SINE B2 1 212 -4 1 1683 738 267 48 38 chr4 144042529 144042739 -11587381 + ID_B1 SINE B4 2 213 -11 1 1683 505 266 16 31 chr4 144043353 144043481 -11586639 + B1F SINE Alu 12 137 -12 1 1683 314 190 0 66 chr4 144043509 144043597 -11586523 + PB1D7 SINE Alu 47 120 0 1 1683 899 268 0 10 chr4 144047421 144047621 -11582499 - B3A SINE B2 0 198 1 1 1684 2081 192 45 19 chr4 144048583 144049002 -11581118 + Lx7 LINE L1 6794 7223 -473 1 1684 204 247 10 61 chr4 144049063 144049119 -11581001 + T-rich Low_complexity Low_complexity 45 96 0 1 1684 755 199 21 7 chr4 144049119 144049261 -11580859 - B1_Mur3 SINE Alu -5 144 1 1 1684 204 247 10 61 chr4 144049261 144049303 -11580817 + T-rich Low_complexity Low_complexity 3 44 0 1 1684 200 263 33 33 chr4 144049342 144049464 -11580656 + (TATG)n Simple_repeat Simple_repeat 1 122 0 1 1684 702 282 12 56 chr4 144049555 144049929 -11580191 - B4A SINE B4 -18 274 4 1 1684 273 151 19 0 chr4 144050811 144050864 -11579256 - L1M1 LINE L1 -412 5888 5835 1 1684 189 268 0 0 chr4 144050873 144050929 -11579191 + CT-rich Low_complexity Low_complexity 1 56 0 1 1684 436 271 0 9 chr4 144050954 144051062 -11579058 + PB1D9 SINE Alu 3 109 -11 1 1684 713 238 0 19 chr4 144051065 144051219 -11578901 - Lx7 LINE L1 -1931 5765 5615 1 1684 2315 70 3 3 chr4 144051592 144051892 -11578228 - L1_Mus1 LINE L1 0 6567 6268 1 1684 1310 76 18 0 chr4 144051898 144052069 -11578051 - B2_Mm2 SINE B2 -19 176 3 1 1684 808 192 0 14 chr4 144052069 144052217 -11577903 - B1_Mur3 SINE Alu -2 147 2 1 1684 925 209 11 5 chr4 144052274 144052462 -11577658 + B3 SINE B2 21 209 -7 1 1684 645 177 105 0 chr4 144052799 144052923 -11577197 + B1_Mur4 SINE Alu 1 137 -13 1 1684 198 0 0 0 chr4 144052923 144052945 -11577175 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1684 225 0 0 0 chr4 144052953 144052978 -11577142 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1684 402 21 0 0 chr4 144053195 144053242 -11576878 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1684 228 307 83 65 chr4 144054029 144054245 -11575875 + L2a LINE L2 3031 3250 -176 1 1684 1000 196 20 0 chr4 144054323 144054527 -11575593 - B3 SINE B2 0 216 9 1 1684 1032 265 20 64 chr4 144054798 144055224 -11574896 + MTE2a LTR MaLR 1 395 -24 1 1684 374 344 100 25 chr4 144055244 144055444 -11574676 + MER20 DNA MER1_type 1 215 -4 1 1684 331 330 17 0 chr4 144056343 144056458 -11573662 + MER54A LTR ERVL 44 160 -741 1 1684 1042 245 0 24 chr4 144056467 144056704 -11573416 + MTD LTR MaLR 1 231 -188 1 1684 2179 147 8 50 chr4 144056704 144057105 -11573015 + RMER12 LTR ERVK 1 384 -938 1 1684 644 323 59 42 chr4 144057150 144057374 -11572746 + B4A SINE B4 3 230 -62 1 1684 596 324 0 0 chr4 144057374 144057516 -11572604 + RSINE1 SINE B4 3 144 -21 1 1684 213 108 0 0 chr4 144057518 144057555 -11572565 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1684 796 293 10 21 chr4 144057574 144057766 -11572354 + B3A SINE B2 3 192 -6 1 1684 306 0 0 0 chr4 144057837 144057871 -11572249 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1684 23 33 0 0 chr4 144057926 144057956 -11572164 + AT_rich Low_complexity Low_complexity 1 30 0 1 1684 684 93 0 0 chr4 144057964 144058061 -11572059 + (GA)n Simple_repeat Simple_repeat 1 97 0 1 1684 382 235 112 9 chr4 144058086 144058202 -11571918 - RSINE1 SINE B4 -36 129 2 1 1684 601 354 115 36 chr4 144058223 144058639 -11571481 + MER54A LTR ERVL 453 901 0 1 1684 466 252 31 63 chr4 144059090 144059217 -11570903 + RSINE1 SINE B4 43 165 0 1 1684 369 0 0 0 chr4 144059256 144059297 -11570823 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1684 247 300 57 0 chr4 144059300 144059370 -11570750 - BC1_Mm scRNA scRNA -78 74 1 1 1684 228 67 0 0 chr4 144059381 144059411 -11570709 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1684 501 122 0 109 chr4 144059420 144059521 -11570599 - PB1D9 SINE Alu -7 113 24 1 1684 27 49 0 0 chr4 144059575 144059616 -11570504 + AT_rich Low_complexity Low_complexity 1 41 0 1 1684 237 304 0 28 chr4 144059644 144059715 -11570405 + PB1D10 SINE Alu 43 111 -6 1 1684 3384 199 93 125 chr4 144059721 144060634 -11569486 + RMER19B LTR ERVK 1 884 -18 1 1684 1139 82 0 14 chr4 144060636 144060773 -11569347 + B1_Mm SINE Alu 2 137 -10 1 1684 423 0 0 0 chr4 144060773 144060820 -11569300 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1684 192 77 0 0 chr4 144060915 144060941 -11569179 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1684 572 280 8 8 chr4 144060941 144061074 -11569046 - B1F SINE Alu -10 139 7 1 1684 22 0 0 0 chr4 144061249 144061271 -11568849 + AT_rich Low_complexity Low_complexity 1 22 0 2 1684 230 222 74 0 chr4 144061292 144061346 -11568774 - L1M5 LINE L1 -340 5784 5727 2 1684 266 276 38 83 chr4 144061537 144061560 -11568560 - B1_Mur2 SINE Alu -20 129 75 2 1684 403 154 23 103 chr4 144061560 144061647 -11568473 - ID_B1 SINE B4 -41 183 104 2 1684 266 276 38 83 chr4 144061647 144061675 -11568445 - B1_Mur2 SINE Alu -20 74 1 2 1684 786 260 20 5 chr4 144061687 144061884 -11568236 - B3 SINE B2 0 216 17 2 1684 24 32 0 0 chr4 144062189 144062220 -11567900 + AT_rich Low_complexity Low_complexity 1 31 0 2 1684 597 300 101 75 chr4 144062557 144062932 -11567188 - MLT1B LTR MaLR 0 390 6 2 1684 295 207 195 0 chr4 144063815 144063897 -11566223 - MLT1D LTR MaLR 0 505 408 2 1684 318 341 210 0 chr4 144063943 144064119 -11566001 - MLT1D LTR MaLR -177 328 116 2 1684 1389 230 29 33 chr4 144064559 144064965 -11565155 - Lx4B LINE L1 -67 6991 6578 2 1684 1017 301 25 30 chr4 144065504 144065939 -11564181 - L1_Mur3 LINE L1 -1970 3910 3478 2 1684 1174 209 29 0 chr4 144065961 144066171 -11563949 - B3 SINE B2 0 216 1 2 1684 1171 199 9 23 chr4 144067588 144067804 -11562316 + B3 SINE B2 1 213 -3 2 1684 581 123 9 36 chr4 144067835 144067945 -11562175 + L1Md_T LINE L1 6476 6582 0 2 1684 2503 146 35 5 chr4 144067990 144068389 -11561731 + MTC LTR MaLR 3 413 -8 2 1684 336 140 220 0 chr4 144068515 144068615 -11561505 + Lx9 LINE L1 7508 7629 -15 2 1684 668 253 60 70 chr4 144069262 144069462 -11560658 + B3A SINE B2 1 198 0 2 1684 1303 140 30 21 chr4 144069756 144069989 -11560131 - Lx2 LINE L1 0 6997 6763 2 1684 7435 115 1 10 chr4 144069976 144071057 -11559063 - Lx2 LINE L1 -352 6645 5581 2 1684 3054 9 0 0 chr4 144071057 144071379 -11558741 - RLTRETN_Mm LTR ERVK 0 322 1 2 1684 3631 130 0 21 chr4 144071379 144071624 -11558496 - Lx2 LINE L1 -303 5580 5339 2 1684 6148 97 8 15 chr4 144071624 144073275 -11556845 - L1VL4 LINE L1 -1811 1748 115 2 1684 3801 238 43 55 chr4 144073298 144075104 -11555016 - Lx5 LINE L1 -1 7049 5265 2 1684 1013 150 49 20 chr4 144075106 144075310 -11554810 - Lx5 LINE L1 -1170 4707 4498 2 1684 688 267 5 103 chr4 144075332 144075545 -11554575 - B3A SINE B2 -2 196 5 2 1684 402 234 10 31 chr4 144075580 144075677 -11554443 - B1_Mur2 SINE Alu 0 149 55 2 1684 288 250 0 0 chr4 144075813 144075865 -11554255 - PB1D9 SINE Alu -59 61 10 2 1684 3768 143 157 14 chr4 144076193 144076838 -11553282 - RMER19A LTR ERVK 0 737 1 2 1684 351 340 65 49 chr4 144077532 144077919 -11552201 + ERVL-B4-int LTR ERVL 2384 2776 -2938 2 1684 1309 243 74 39 chr4 144078108 144078472 -11551648 - MTE2b LTR MaLR -2 377 1 2 1684 282 291 24 57 chr4 144078770 144078883 -11551237 - LTR40b LTR ERVL -4 458 348 2 1684 744 99 0 0 chr4 144078883 144078994 -11551126 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 2 1684 381 117 0 0 chr4 144079270 144079330 -11550790 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1684 520 345 60 27 chr4 144079580 144079914 -11550206 - ERVL-B4-int LTR ERVL -3027 2687 2343 2 1684 246 316 0 0 chr4 144080384 144080460 -11549660 + PB1D10 SINE Alu 36 111 -6 2 1684 305 177 16 0 chr4 144080638 144080700 -11549420 - B3 SINE B2 0 216 154 2 1684 896 208 110 7 chr4 144080752 144080994 -11549126 - Lx3C LINE L1 -1 6999 6729 2 1684 2321 162 62 23 chr4 144080996 144081472 -11548648 + RLTR31A_Mm LTR ERVK 30 561 0 2 1684 1280 142 116 0 chr4 144081479 144081704 -11548416 - Lx3C LINE L1 -268 6708 6458 2 1684 415 346 37 6 chr4 144081988 144082151 -11547969 - MLT1F2 LTR MaLR -42 518 351 2 1684 1077 199 36 31 chr4 144082186 144082409 -11547711 - URR1B DNA MER1_type 0 225 2 2 1684 2165 237 81 57 chr4 144082623 144083250 -11546870 + RLTR26 LTR ERVK 1 642 0 2 1684 585 0 0 0 chr4 144085459 144085524 -11544596 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 1684 475 214 10 10 chr4 144085804 144085908 -11544212 - L1MC2 LINE L1 -224 6120 6017 2 1684 1523 199 180 96 chr4 144085908 144086448 -11543672 + RMER4B LTR ERVK 1 585 0 2 1684 221 0 0 33 chr4 144086754 144086784 -11543336 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 1684 4491 73 6 2 chr4 144087160 144087778 -11542342 - L1_Mus1 LINE L1 -407 6160 5540 2 1684 510 103 0 0 chr4 144088205 144088292 -11541828 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1684 2624 87 0 0 chr4 144088949 144089328 -11540792 - L1_Mm LINE L1 -4266 1617 1239 2 1684 1115 45 8 0 chr4 144089326 144089460 -11540660 + L1Md_F2 LINE L1 5452 5586 -297 2 1684 8786 39 5 2 chr4 144089460 144090453 -11539667 + L1Md_F2 LINE L1 5587 6582 0 2 1684 999 272 17 8 chr4 144091381 144091618 -11538502 + Lx8 LINE L1 6469 6707 -766 2 1684 696 276 7 0 chr4 144091861 144092013 -11538107 - Lx8 LINE L1 -1120 6353 6201 2 1684 655 207 0 0 chr4 144092018 144092129 -11537991 - B3 SINE B2 -105 111 1 2 1684 748 254 0 0 chr4 144092140 144092282 -11537838 - B1_Mur1 SINE Alu -7 142 1 2 1684 23 0 0 0 chr4 144092356 144092379 -11537741 + AT_rich Low_complexity Low_complexity 1 23 0 2 1684 216 196 65 102 chr4 144093374 144093482 -11536638 - B2_Mm2 SINE B2 0 195 92 2 1684 311 109 62 0 chr4 144093500 144093564 -11536556 + RMER4A LTR ERVK 399 466 0 2 1684 4633 173 61 36 chr4 144093564 144094028 -11536092 + MurERV4-int LTR ERVK 1 448 -4812 2 1684 1565 59 21 5 chr4 144094028 144094216 -11535904 + B2_Mm2 SINE B2 1 191 -4 2 1684 4633 173 61 36 chr4 144094216 144094669 -11535451 + MurERV4-int LTR ERVK 449 941 -4319 2 1684 4389 166 50 11 chr4 144094663 144095405 -11534715 + MurERV4-int LTR ERVK 564 1334 -3926 2 1684 206 229 21 0 chr4 144095656 144095704 -11534416 + CT-rich Low_complexity Low_complexity 2 50 0 2 1684 3385 68 0 2 chr4 144095959 144096356 -11533764 - MTA_Mm LTR MaLR 0 396 1 2 1684 282 284 23 0 chr4 144096814 144096902 -11533218 - L2b LINE L2 -10 3365 3276 2 1684 450 114 0 0 chr4 144098360 144098430 -11531690 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1684 511 15 14 14 chr4 144098448 144098517 -11531603 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 2 1684 32265 123 52 25 chr4 144098965 144099809 -11530311 + L1Md_F2 LINE L1 383 1261 -4622 2 1684 189 0 0 0 chr4 144099809 144099830 -11530290 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1684 32265 80 7 2 chr4 144099830 144104146 -11525974 + L1Md_F2 LINE L1 1262 5586 -297 2 1684 8141 66 8 3 chr4 144104146 144105137 -11524983 + L1Md_F2 LINE L1 5587 6582 0 2 1684 576 235 16 16 chr4 144105376 144105497 -11524623 - B3A SINE B2 -70 128 8 2 1684 504 72 0 0 chr4 144105507 144105576 -11524544 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 2 1684 248 263 70 0 chr4 144105638 144105695 -11524425 + ID_B1 SINE B4 161 221 -3 2 1684 434 296 0 0 chr4 144105698 144105806 -11524314 - PB1D9 SINE Alu 0 120 13 2 1684 477 0 0 0 chr4 144106824 144106877 -11523243 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1684 415 300 132 13 chr4 144107521 144107673 -11522447 + B4A SINE B4 123 292 0 2 1684 189 0 0 0 chr4 144107685 144107706 -11522414 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1684 207 0 0 0 chr4 144107706 144107729 -11522391 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1684 8003 58 3 11 chr4 144107765 144108811 -11521309 + L1_Mus1 LINE L1 5529 6567 0 2 1684 29 0 0 0 chr4 144108811 144108840 -11521280 + AT_rich Low_complexity Low_complexity 1 29 0 2 1684 1199 72 0 6 chr4 144108950 144109118 -11521002 + (GGAAA)n Simple_repeat Simple_repeat 5 171 0 2 1684 192 275 27 55 chr4 144109325 144109398 -11520722 - MIRm SINE MIR -88 188 118 2 1684 399 218 320 0 chr4 144110693 144110849 -11519271 + B3 SINE B2 11 216 0 2 1684 656 289 10 31 chr4 144112820 144113016 -11517104 + B3A SINE B2 7 198 0 2 1684 1208 360 61 41 chr4 144114230 144115127 -11514993 - MTE-int LTR MaLR -71 1509 595 2 1684 339 308 40 99 chr4 144115160 144115362 -11514758 - B3A SINE B2 -3 192 3 2 1684 189 0 0 0 chr4 144116163 144116184 -11513936 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1684 230 194 0 15 chr4 144116335 144116403 -11513717 + CT-rich Low_complexity Low_complexity 107 173 0 2 1684 375 337 71 18 chr4 144117084 144117253 -11512867 + B3A SINE B2 3 180 -18 2 1684 630 251 178 16 chr4 144117475 144117777 -11512343 - MTD LTR MaLR 0 419 48 2 1684 234 259 0 25 chr4 144117802 144117921 -11512199 + CT-rich Low_complexity Low_complexity 1 116 0 2 1684 252 232 18 0 chr4 144119147 144119203 -11510917 + tRNA-Ala-GCY_ tRNA tRNA 10 66 -9 2 1684 22 0 0 0 chr4 144119220 144119242 -11510878 + AT_rich Low_complexity Low_complexity 1 22 0 2 1684 25 0 0 0 chr4 144119337 144119362 -11510758 + AT_rich Low_complexity Low_complexity 1 25 0 2 1684 621 0 0 0 chr4 144119487 144119556 -11510564 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1684 587 220 136 0 chr4 144119556 144119674 -11510446 - B1_Mur1 SINE Alu -13 136 3 2 1684 583 302 132 25 chr4 144119702 144120311 -11509809 - L1M2 LINE L1 -838 6161 5478 2 1684 417 281 56 28 chr4 144120315 144120458 -11509662 - B1F1 SINE Alu -2 147 1 2 1684 656 307 101 80 chr4 144120487 144121323 -11508797 - L1_Mur3 LINE L1 -1912 3968 3116 2 1684 5447 208 35 10 chr4 144121320 144122541 -11507579 - Lx2B LINE L1 -2 7056 5707 2 1684 3732 153 2 3 chr4 144122542 144123177 -11506943 + L1_Mur2 LINE L1 4713 5346 -531 2 1684 1858 208 28 68 chr4 144123164 144123634 -11506486 + Lx2B LINE L1 6548 6998 -2 2 1684 1976 189 8 11 chr4 144123638 144124001 -11506119 + L1_Mur2 LINE L1 5361 5722 -164 2 1684 361 308 100 46 chr4 144124201 144124852 -11505268 - L1M2 LINE L1 -3939 2610 1986 2 1684 219 266 0 58 chr4 144125389 144125418 -11504702 + polypurine Low_complexity Low_complexity 4 30 0 2 1684 5109 44 3 8 chr4 144125418 144126131 -11503989 + L1Md_T LINE L1 5962 6582 0 2 1684 760 199 20 33 chr4 144126164 144126315 -11503805 + B1_Mur3 SINE Alu 1 149 0 2 1684 7164 92 30 1 chr4 144126316 144127751 -11502369 + L1VL2 LINE L1 32 1509 -2106 2 1684 2965 222 56 118 chr4 144127751 144128313 -11501807 - RMER17B LTR ERVK 0 958 437 2 1684 675 0 0 0 chr4 144128313 144128388 -11501732 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1684 2965 222 56 118 chr4 144128388 144128508 -11501612 - RMER17B LTR ERVK -522 436 326 2 1684 1173 129 26 0 chr4 144128508 144128701 -11501419 + L1Md_T LINE L1 6385 6582 0 2 1684 2965 222 56 118 chr4 144128701 144129038 -11501082 - RMER17B LTR ERVK -633 325 2 2 1684 1803 70 82 31 chr4 144129038 144129331 -11500789 + MusHAL1 LINE L1 601 908 -1804 3 1684 3011 68 42 0 chr4 144129761 144130145 -11499975 - MTB LTR MaLR 0 400 1 3 1684 1014 265 239 50 chr4 144131057 144131501 -11498619 - RMER15 LTR ERVL -44 531 4 3 1684 2103 164 90 5 chr4 144131619 144132006 -11498114 + MTC LTR MaLR 1 420 -1 3 1684 779 271 31 0 chr4 144133068 144133260 -11496860 + B3 SINE B2 7 204 -12 3 1684 2046 186 8 23 chr4 144133275 144133661 -11496459 + RLTR14 LTR ERV1 3 382 0 3 1684 234 0 0 0 chr4 144134729 144134755 -11495365 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1684 1103 65 12 17 chr4 144135086 144135258 -11494862 + (TTTTC)n Simple_repeat Simple_repeat 2 172 0 3 1684 752 215 0 39 chr4 144138621 144138637 -11491483 - B1F2 SINE Alu 0 149 139 3 1684 230 0 0 32 chr4 144138637 144138668 -11491452 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1684 752 215 0 39 chr4 144138668 144138806 -11491314 - B1F2 SINE Alu -11 138 1 3 1684 723 169 96 0 chr4 144138920 144139086 -11491034 + ORR1D1 LTR MaLR 193 374 0 3 1684 28 29 0 0 chr4 144139424 144139459 -11490661 + AT_rich Low_complexity Low_complexity 1 35 0 3 1684 209 255 0 18 chr4 144139775 144139831 -11490289 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1684 468 48 0 0 chr4 144140345 144140408 -11489712 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 3 1684 611 281 58 0 chr4 144141450 144141589 -11488531 - RSINE1 SINE B4 -17 148 2 3 1684 605 261 0 14 chr4 144141698 144141842 -11488278 - RSINE1 SINE B4 -22 143 2 3 1684 240 292 28 0 chr4 144141873 144141945 -11488175 + MER82 DNA MER2_type 10 83 -570 3 1684 288 0 0 0 chr4 144141981 144142013 -11488107 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1684 1103 22 8 0 chr4 144142013 144142146 -11487974 + (GA)n Simple_repeat Simple_repeat 1 135 0 3 1684 2465 221 78 10 chr4 144142163 144142738 -11487382 + RLTR18 LTR ERVK 1 614 -2 3 1684 550 228 49 0 chr4 144142742 144142865 -11487255 - B3 SINE B2 -87 129 1 3 1684 424 167 0 40 chr4 144142930 144143055 -11487065 - Lx9 LINE L1 -6 7638 7519 3 1684 313 291 147 15 chr4 144143055 144143191 -11486929 - MTD LTR MaLR -260 159 6 3 1684 2195 283 105 34 chr4 144143286 144144070 -11486050 - MTE-int LTR MaLR -145 1435 597 3 1684 522 305 71 123 chr4 144145839 144146261 -11483859 + MTD LTR MaLR 6 405 -14 3 1684 1749 238 58 23 chr4 144147001 144147499 -11482621 + MT2A LTR ERVL 1 595 -6 3 1684 1020 278 78 42 chr4 144147909 144148266 -11481854 + ORR1D2 LTR MaLR 1 370 0 3 1684 217 320 41 10 chr4 144150078 144150176 -11479944 - L2a LINE L2 -54 3372 3272 3 1684 5629 118 34 29 chr4 144151644 144152087 -11478033 + Lx3_Mus LINE L1 6079 6527 -482 3 1684 1306 109 16 0 chr4 144152087 144152271 -11477849 + B2_Mm2 SINE B2 1 187 -8 3 1684 5629 118 34 29 chr4 144152271 144152734 -11477386 + Lx3_Mus LINE L1 6528 6990 -19 3 1684 863 121 7 0 chr4 144152736 144152876 -11477244 + (GGAA)n Simple_repeat Simple_repeat 3 143 0 3 1684 987 9 0 0 chr4 144153639 144153751 -11476369 + (TTCCC)n Simple_repeat Simple_repeat 4 115 0 3 1684 1091 70 0 40 chr4 144154616 144154764 -11475356 + B1_Mus2 SINE Alu 3 144 -3 3 1684 517 310 44 53 chr4 144155759 144155987 -11474133 + RMER15-int LTR ERVL 349 574 -4425 3 1684 1510 280 84 9 chr4 144156001 144156465 -11473655 + RMER15-int LTR ERVL 821 1319 -3680 3 1684 516 302 0 80 chr4 144156511 144156687 -11473433 + RSINE1 SINE B4 4 165 0 3 1684 567 0 0 0 chr4 144156713 144156776 -11473344 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1684 400 281 80 15 chr4 144157003 144157140 -11472980 + RMER15-int LTR ERVL 4278 4423 -576 3 1684 360 0 0 0 chr4 144157259 144157299 -11472821 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1684 536 243 14 41 chr4 144157305 144157451 -11472669 + RMER15-int LTR ERVL 4649 4790 -209 3 1684 308 285 128 118 chr4 144157476 144157679 -11472441 + RMER15-int LTR ERVL 4788 4992 -7 3 1684 336 268 163 86 chr4 144157802 144158035 -11472085 + RMER15 LTR ERVL 308 558 -17 3 1684 1034 244 170 20 chr4 144158135 144158482 -11471638 - MTD LTR MaLR -20 399 1 3 1684 415 366 32 0 chr4 144158765 144158951 -11471169 + MLT1F2 LTR MaLR 298 489 -71 3 1684 10734 152 41 19 chr4 144159088 144161037 -11469083 + L1_Mur2 LINE L1 3766 5756 -121 3 1684 10412 52 0 2 chr4 144161031 144162313 -11467807 + L1Md_F3 LINE L1 4308 5586 -297 3 1684 8060 41 16 3 chr4 144162313 144163296 -11466824 + L1Md_F3 LINE L1 5587 6582 -2 3 1684 6168 150 43 14 chr4 144163296 144164316 -11465804 + Lx4B LINE L1 5745 6797 -261 3 1684 1780 207 117 17 chr4 144164317 144164913 -11465207 + BGLII_B LTR ERVK 1 547 -6 3 1684 937 181 122 19 chr4 144164914 144165128 -11464992 + Lx4B LINE L1 6793 7028 -30 3 1684 573 15 0 0 chr4 144165131 144165197 -11464923 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1684 354 184 0 0 chr4 144165755 144165831 -11464289 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1684 832 268 95 38 chr4 144166552 144166816 -11463304 + RLTR21 LTR ERVK 13 291 -1281 3 1684 4513 70 0 10 chr4 144166889 144167481 -11462639 - L1Md_F2 LINE L1 -1 6581 5996 3 1684 421 261 61 46 chr4 144168054 144168226 -11461894 - ERVL-E-int LTR ERVL -3157 2604 2315 3 1684 641 329 0 0 chr4 144168657 144168800 -11461320 + RSINE1 SINE B4 8 150 -15 3 1684 21 36 0 0 chr4 144168838 144168866 -11461254 + AT_rich Low_complexity Low_complexity 1 28 0 3 1684 718 182 0 0 chr4 144169409 144169535 -11460585 + B1_Mur4 SINE Alu 18 143 -7 3 1684 1328 266 53 86 chr4 144169912 144170765 -11459355 + RMER12 LTR ERVK 1 803 -1045 3 1684 974 123 0 6 chr4 144170825 144170988 -11459132 + (TTCTC)n Simple_repeat Simple_repeat 3 164 0 3 1684 509 229 8 0 chr4 144171000 144171131 -11458989 + CT-rich Low_complexity Low_complexity 2 133 0 3 1684 561 209 62 104 chr4 144171133 144171325 -11458795 + RMER12 LTR ERVK 988 1171 -151 3 1684 1057 123 0 0 chr4 144172357 144172503 -11457617 - B1_Mus2 SINE Alu 0 147 2 3 1684 889 281 4 8 chr4 144172519 144172774 -11457346 - RLTR14 LTR ERV1 -128 254 1 3 1684 311 364 43 5 chr4 144172794 144172979 -11457141 - LTR41 LTR ERVL 0 768 577 3 1684 253 325 119 40 chr4 144173367 144173569 -11456551 + ERVL-E-int LTR ERVL 2705 2922 -2745 3 1684 617 358 70 52 chr4 144173681 144174074 -11456046 + MER82 DNA MER2_type 116 513 -140 3 1684 3110 193 28 16 chr4 144174074 144174689 -11455431 - Lx2B LINE L1 -5 6995 6374 3 1684 617 358 70 52 chr4 144174689 144174796 -11455324 + MER82 DNA MER2_type 514 625 -28 3 1684 278 305 57 0 chr4 144174963 144175068 -11455052 + ERVL-E-int LTR ERVL 3157 3267 -2400 3 1684 357 204 42 21 chr4 144175078 144175173 -11454947 + Lx2B LINE L1 6826 6922 -78 3 1684 451 154 241 14 chr4 144175920 144176065 -11454055 - Lx9 LINE L1 -44 7600 7423 3 1684 404 158 64 82 chr4 144176853 144176963 -11453157 - B1_Mur2 SINE Alu 0 149 42 3 1684 207 0 0 0 chr4 144178851 144178874 -11451246 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1684 342 200 29 0 chr4 144178874 144178944 -11451176 + Lx9 LINE L1 7368 7439 -205 3 1684 1656 312 26 9 chr4 144178937 144179184 -11450936 - Lx8 LINE L1 -210 7263 7018 3 210 1298 99 39 0 chr4 144179184 144179366 -11450754 - B2_Mm2 SINE B2 -2 193 5 3 1685 1656 312 26 9 chr4 144179366 144179661 -11450459 - Lx8 LINE L1 -456 7017 6713 3 1685 1697 258 72 26 chr4 144179722 144179763 -11450357 + Lx8 LINE L1 6131 6181 -1292 3 1685 234 0 0 0 chr4 144179763 144179789 -11450331 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1685 1697 258 72 26 chr4 144179789 144180249 -11449871 + Lx8 LINE L1 6182 6654 -819 3 1685 542 298 26 26 chr4 144180317 144180551 -11449569 - ORR1E-int LTR MaLR -1342 238 5 3 1685 501 275 223 46 chr4 144180551 144180856 -11449264 - ORR1E LTR MaLR 0 359 1 3 1685 513 0 0 0 chr4 144181160 144181217 -11448903 + (TTGG)n Simple_repeat Simple_repeat 3 59 0 3 1685 475 259 60 0 chr4 144182390 144182506 -11447614 - B3 SINE B2 -93 123 1 3 1685 1602 207 73 30 chr4 144182738 144183136 -11446984 + MTD LTR MaLR 5 419 0 3 1685 36452 50 1 15 chr4 144183137 144188285 -11441835 + L1Md_T LINE L1 517 5586 -297 3 1685 8427 42 0 0 chr4 144188286 144189281 -11440839 + L1Md_T LINE L1 5588 6582 0 3 1685 4058 45 0 0 chr4 144189281 144189768 -11440352 + L1Md_F2 LINE L1 5100 5586 -297 3 1685 7942 53 1 1 chr4 144189769 144190750 -11439370 + L1Md_F2 LINE L1 5588 6568 -14 3 1685 37195 60 1 24 chr4 144190761 144196643 -11433477 + L1Md_T LINE L1 99 5586 -297 3 1685 8195 55 0 0 chr4 144196643 144197682 -11432438 + L1Md_T LINE L1 5587 6582 0 3 1685 207 69 0 0 chr4 144197703 144197732 -11432388 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1685 260 235 73 0 chr4 144197915 144197983 -11432137 + RLTR26 LTR ERVK 546 618 -24 3 1685 360 321 36 7 chr4 144197994 144198132 -11431988 - Lx4B LINE L1 -591 6467 6326 3 1685 964 319 101 22 chr4 144198142 144199218 -11430902 - L1_Mur3 LINE L1 -3397 2483 1323 3 1685 503 133 28 34 chr4 144199558 144199737 -11430383 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1685 375 172 47 0 chr4 144201006 144201070 -11429050 + RMER15-int LTR ERVL 1155 1221 -3778 3 1685 21 0 0 0 chr4 144201092 144201113 -11429007 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 264 103 0 0 chr4 144201151 144201190 -11428930 - U2 snRNA snRNA -149 39 1 3 1685 561 251 134 121 chr4 144201232 144201332 -11428788 + L1MB2 LINE L1 5681 5767 -404 3 1685 438 235 0 12 chr4 144201332 144201414 -11428706 + ID4 SINE ID 1 81 -2 3 1685 561 251 134 121 chr4 144201414 144201776 -11428344 + L1MB2 LINE L1 5768 6149 -22 3 1685 462 333 0 58 chr4 144201822 144201978 -11428142 - RSINE1 SINE B4 -4 161 15 3 1685 5224 113 91 0 chr4 144202457 144203253 -11426867 + Lx3C LINE L1 6106 6973 -3 3 1685 405 58 0 0 chr4 144203265 144203317 -11426803 + (CAT)n Simple_repeat Simple_repeat 2 53 0 3 1685 194 0 39 0 chr4 144203335 144203361 -11426759 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1685 404 306 47 127 chr4 144203977 144204213 -11425907 - ID_B1 SINE B4 -6 218 2 3 1685 198 0 0 0 chr4 144205293 144205315 -11424805 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1685 1088 165 0 28 chr4 144206244 144206425 -11423695 - Lx3C LINE L1 -354 6622 6447 3 1685 508 217 209 6 chr4 144206529 144206716 -11423404 + MTD LTR MaLR 173 404 -15 3 1685 721 302 147 17 chr4 144206716 144206800 -11423320 - L1M2 LINE L1 -762 5381 5277 3 1685 360 0 0 0 chr4 144206800 144206840 -11423280 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1685 315 0 0 0 chr4 144206840 144206874 -11423246 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1685 721 302 147 17 chr4 144206874 144207320 -11422800 - L1M2 LINE L1 -867 5276 4782 3 1685 180 228 0 42 chr4 144207573 144207653 -11422467 + CT-rich Low_complexity Low_complexity 20 96 0 3 1685 405 0 0 0 chr4 144207653 144207698 -11422422 + (CAT)n Simple_repeat Simple_repeat 1 45 0 3 1685 180 228 0 42 chr4 144207698 144207713 -11422407 + polypyrimidine Low_complexity Low_complexity 5 19 0 3 1685 387 0 0 0 chr4 144208898 144208941 -11421179 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1685 333 0 0 0 chr4 144208941 144208977 -11421143 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1685 1220 48 0 0 chr4 144213449 144213594 -11416526 + B1_Mm SINE Alu 3 147 0 4 1685 618 82 0 0 chr4 144213596 144213681 -11416439 + (GGA)n Simple_repeat Simple_repeat 3 87 0 4 1685 1158 78 0 0 chr4 144213681 144213861 -11416259 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1685 273 362 48 44 chr4 144214921 144215149 -11414971 - MLT1E1A LTR MaLR -34 646 418 4 1685 7734 43 24 0 chr4 144215401 144216338 -11413782 + L1Md_F2 LINE L1 5624 6582 0 4 1685 271 219 135 54 chr4 144216483 144216594 -11413526 - ORR1E LTR MaLR -5 354 235 4 1685 5937 129 33 12 chr4 144216700 144217638 -11412482 + RMER17B LTR ERVK 1 958 0 4 1685 249 33 0 0 chr4 144217662 144217692 -11412428 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 4 1685 367 248 161 55 chr4 144217694 144217912 -11412208 + Lx8 LINE L1 7000 7240 -233 4 1685 632 201 26 39 chr4 144217946 144217970 -11412150 - Lx6 LINE L1 -1721 5739 5719 4 1685 5154 150 72 12 chr4 144217970 144218626 -11411494 - Lx3C LINE L1 -2 6974 6273 4 1685 792 0 0 0 chr4 144218626 144218714 -11411406 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1685 5154 150 72 12 chr4 144218714 144219008 -11411112 - Lx3C LINE L1 -704 6272 5969 4 1685 2111 157 11 3 chr4 144219008 144219376 -11410744 - Lx6 LINE L1 -412 5750 5375 4 1685 647 249 58 63 chr4 144219327 144219533 -11410587 + Lx8 LINE L1 7253 7457 -16 4 1685 276 319 0 0 chr4 144219532 144219626 -11410494 - L1M1 LINE L1 -459 5841 5748 4 1685 2487 100 3 0 chr4 144219893 144220243 -11409877 - Lx3_Mus LINE L1 0 7009 6659 4 1685 5798 99 8 5 chr4 144220243 144221047 -11409073 - RLTR13D1 LTR ERVK 0 806 1 4 1685 1343 139 0 0 chr4 144221078 144221279 -11408841 - ETnERV3-int LTR ERVK -79 5729 5529 4 1685 2830 178 4 24 chr4 144221279 144221826 -11408294 - ETnERV3-int LTR ERVK -419 5389 4854 4 1685 234 118 0 0 chr4 144221826 144221860 -11408260 - RLTR13D6 LTR ERVK -868 34 1 4 1685 7655 84 28 4 chr4 144221860 144223175 -11406945 - Lx3_Mus LINE L1 -345 6664 5324 4 1685 7201 62 0 1 chr4 144223169 144224049 -11406071 + L1_Mm LINE L1 4707 5586 -297 4 1685 8199 48 2 7 chr4 144224049 144225050 -11405070 + L1Md_F2 LINE L1 5587 6582 0 4 1685 10445 85 7 9 chr4 144225053 144226542 -11403578 - Lx3_Mus LINE L1 -548 5338 3853 4 1685 8307 112 28 8 chr4 144226542 144226741 -11403379 + Lx3A LINE L1 5706 5912 -1069 4 1685 297 0 0 0 chr4 144226741 144226774 -11403346 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 1685 8307 112 28 8 chr4 144226774 144227823 -11402297 + Lx3A LINE L1 5913 6978 -3 4 1685 510 67 0 0 chr4 144227866 144227941 -11402179 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1685 404 219 8 0 chr4 144230046 144230169 -11399951 + GA-rich Low_complexity Low_complexity 3 126 0 4 1685 292 209 45 23 chr4 144231363 144231451 -11398669 - MLT1D LTR MaLR -8 497 408 4 1685 1185 244 205 6 chr4 144231516 144231882 -11398238 - RMER15 LTR ERVL -56 519 81 4 1685 454 259 122 47 chr4 144233465 144233664 -11396456 - RLTR21 LTR ERVK -118 1454 1280 4 1685 384 22 0 0 chr4 144233664 144233709 -11396411 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1685 401 251 151 59 chr4 144233709 144233744 -11396376 - RLTR21 LTR ERVK -280 1292 1252 4 1685 1819 144 46 30 chr4 144233712 144234107 -11396013 - RLTR21 LTR ERVK -483 1089 689 4 1685 1298 251 10 33 chr4 144234098 144234399 -11395721 - RLTR21 LTR ERVK -1275 297 4 4 1685 1137 289 64 13 chr4 144234894 144235364 -11394756 + Lx9 LINE L1 7130 7623 -21 4 1685 1462 98 0 18 chr4 144235389 144235618 -11394502 + Lx3_Mus LINE L1 6785 7009 0 4 1685 24 0 0 0 chr4 144235618 144235642 -11394478 + AT_rich Low_complexity Low_complexity 1 24 0 4 1685 39874 60 1 23 chr4 144236248 144243129 -11386991 - L1Md_T LINE L1 0 6582 99 4 1685 707 244 109 27 chr4 144243130 144243425 -11386695 - RLTR26 LTR ERVK -287 355 5 4 1685 1960 171 5 51 chr4 144243439 144243568 -11386552 - MERVK26-int LTR ERVK -2 6917 6793 4 1685 4253 149 27 3 chr4 144243568 144244276 -11385844 - Lx2 LINE L1 0 6997 6273 4 1685 1960 171 5 51 chr4 144244276 144244521 -11385599 - MERVK26-int LTR ERVK -127 6792 6560 4 1685 3243 183 2 2 chr4 144244522 144245054 -11385066 + MERVK26-int LTR ERVK 1327 1858 -5061 4 1685 3145 175 59 26 chr4 144245091 144246159 -11383961 + MERVK26-int LTR ERVK 5938 6523 -396 4 1685 1641 186 104 0 chr4 144246158 144246485 -11383635 - MERVK26-int LTR ERVK -809 6110 5750 4 1685 11538 162 13 8 chr4 144246482 144247996 -11382124 - MERVK26-int LTR ERVK -2212 4707 3180 4 1685 894 88 0 0 chr4 144247996 144248121 -11381999 + (GGA)n Simple_repeat Simple_repeat 1 125 0 4 1685 11538 162 13 8 chr4 144248121 144248510 -11381610 - MERVK26-int LTR ERVK -3740 3179 2796 4 1685 8394 45 19 2 chr4 144248535 144249935 -11380185 - L1Md_F3 LINE L1 -1 6583 5146 4 1685 1981 109 116 0 chr4 144249935 144250255 -11379865 + IAPEY2_LTR LTR ERVK 1 357 0 4 1685 5548 64 46 5 chr4 144250255 144250284 -11379836 - L1Md_F3 LINE L1 -738 5145 5120 4 1685 9814 117 18 6 chr4 144250284 144251717 -11378403 + IAPEY3-int LTR ERVK 27 1477 -6203 4 1685 4561 111 6 19 chr4 144251713 144252385 -11377735 + IAPEy-int LTR ERVK 6851 7513 0 4 1685 1649 119 0 0 chr4 144252385 144252638 -11377482 + IAPEY3_LTR LTR ERVK 1 253 -79 4 1685 1154 56 0 0 chr4 144252638 144252781 -11377339 - L1Md_F3 LINE L1 -880 5003 4861 4 1685 15000 179 21 32 chr4 144252781 144255214 -11374906 - MERVK26-int LTR ERVK -4128 2791 345 4 1685 3108 153 20 28 chr4 144255214 144255759 -11374361 + Lx3B LINE L1 6433 6973 0 4 1685 15000 179 21 32 chr4 144255759 144255802 -11374318 - MERVK26-int LTR ERVK -6575 344 337 4 1685 267 103 0 0 chr4 144255802 144255841 -11374279 + (TAA)n Simple_repeat Simple_repeat 3 41 0 4 1685 15000 179 21 32 chr4 144255841 144256118 -11374002 - MERVK26-int LTR ERVK -6583 336 67 4 1685 1076 287 94 47 chr4 144256195 144256738 -11373382 - RLTR26 LTR ERVK -4 638 31 4 1685 1904 206 37 29 chr4 144256780 144257271 -11372849 + Lx2B LINE L1 6460 7058 0 4 1685 285 224 0 15 chr4 144257308 144257376 -11372744 + L1_Mur3 LINE L1 2508 2574 -3306 4 1685 1409 252 29 60 chr4 144257373 144257858 -11372262 - L1_Rod LINE L1 -634 5213 4744 4 1685 537 300 83 12 chr4 144257870 144258123 -11371997 + Lx7 LINE L1 4751 5021 -1122 4 1685 838 278 93 24 chr4 144258138 144258662 -11371458 + Lx7 LINE L1 5173 5798 -493 4 1685 25 0 0 0 chr4 144258677 144258702 -11371418 + AT_rich Low_complexity Low_complexity 1 25 0 4 1685 563 329 7 0 chr4 144258722 144258865 -11371255 - RSINE1 SINE B4 -18 147 4 4 1685 358 216 116 29 chr4 144258865 144259003 -11371117 + Lx7 LINE L1 5753 5902 -1794 4 1685 1284 200 79 57 chr4 144259035 144259353 -11370767 + ORR1B2 LTR MaLR 35 359 -8 4 1685 853 306 32 25 chr4 144261298 144261583 -11368537 + ORR1E LTR MaLR 10 296 -63 4 1685 615 27 0 0 chr4 144261630 144261703 -11368417 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 4 1685 1547 271 58 30 chr4 144261755 144262250 -11367870 + Lx6 LINE L1 6455 7178 -282 4 1685 186 43 0 0 chr4 144262250 144262273 -11367847 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1685 1068 93 0 0 chr4 144262273 144262412 -11367708 - B1_Mus2 SINE Alu -8 139 1 4 1685 1547 263 66 30 chr4 144262412 144262648 -11367472 + Lx6 LINE L1 7179 7433 -27 4 1685 1398 266 29 84 chr4 144262702 144263284 -11366836 + ORR1E-int LTR MaLR 136 685 -685 4 1685 235 299 73 57 chr4 144265096 144265220 -11364900 + MLT1B LTR MaLR 248 373 -17 4 1685 1039 276 69 40 chr4 144265337 144265714 -11364406 + MTD LTR MaLR 18 405 -14 4 1685 252 379 32 0 chr4 144265974 144266069 -11364051 - RSINE1 SINE B4 -21 144 47 4 1685 31804 98 11 10 chr4 144266691 144272020 -11358100 + L1Md_F2 LINE L1 294 5553 -330 4 1685 5134 88 3 3 chr4 144272020 144272706 -11357414 + L1Md_F2 LINE L1 5895 6580 -2 4 1685 252 0 0 0 chr4 144273712 144273740 -11356380 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1685 384 59 0 0 chr4 144273740 144273790 -11356330 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1685 830 158 0 12 chr4 144274003 144274163 -11355957 + RLTR14 LTR ERV1 1 158 -224 4 1685 4306 163 25 15 chr4 144274163 144275063 -11355057 + RMER12 LTR ERVK 1 741 -581 4 1685 207 277 0 0 chr4 144275758 144275805 -11354315 + GA-rich Low_complexity Low_complexity 4 50 0 4 1685 938 118 7 0 chr4 144275811 144275963 -11354157 + (GGAA)n Simple_repeat Simple_repeat 2 154 0 4 1685 442 328 22 14 chr4 144276764 144276903 -11353217 + RSINE1 SINE B4 20 159 -6 4 1685 312 370 80 30 chr4 144276937 144277199 -11352921 + B4 SINE B4 6 280 -12 4 1685 393 22 0 0 chr4 144277293 144277339 -11352781 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1685 487 271 80 40 chr4 144277368 144277668 -11352452 + L1_Rod LINE L1 2264 2575 -3272 4 1685 3223 54 0 0 chr4 144277728 144278117 -11352003 - L1_Mus1 LINE L1 0 6567 6179 4 1685 770 305 70 26 chr4 144278124 144278170 -11351950 - L1M2 LINE L1 -2479 3664 3620 4 1685 1404 249 21 45 chr4 144278170 144278549 -11351571 + ORR1D2 LTR MaLR 1 370 0 4 1685 770 305 70 26 chr4 144278549 144279112 -11351008 - L1M2 LINE L1 -2524 3619 3028 4 1685 23 33 0 0 chr4 144279238 144279268 -11350852 + AT_rich Low_complexity Low_complexity 1 30 0 4 1685 13354 112 21 6 chr4 144279464 144282363 -11347757 - MusHAL1 LINE L1 0 3914 906 4 1685 12006 112 14 6 chr4 144282362 144284287 -11345833 + L1Md_F2 LINE L1 3647 5585 -298 4 1685 7567 75 1 4 chr4 144284288 144285285 -11344835 + L1Md_F2 LINE L1 5587 6580 -2 4 1685 2279 161 31 18 chr4 144285285 144285572 -11344548 + L1_Mur1 LINE L1 4341 4630 -1256 4 1685 375 23 0 0 chr4 144285572 144285616 -11344504 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1685 2279 161 31 18 chr4 144285616 144285778 -11344342 + L1_Mur1 LINE L1 4631 4795 -1091 4 1685 2505 101 3 21 chr4 144285773 144286147 -11343973 + Lx2 LINE L1 6279 6645 -352 4 1685 1124 143 8 61 chr4 144286136 144286382 -11343738 + Lx2 LINE L1 6765 6997 0 4 1685 275 133 17 0 chr4 144286378 144286438 -11343682 + Lx4A LINE L1 6010 6070 -988 4 1685 2238 182 86 63 chr4 144286440 144287107 -11343013 + RMER19A LTR ERVK 3 721 -16 4 1685 1320 217 41 3 chr4 144287123 144287414 -11342706 + Lx2B LINE L1 6213 6514 -486 4 1685 499 262 20 15 chr4 144287787 144287985 -11342135 + L1_Mur3 LINE L1 4102 4300 -1580 4 1685 482 184 96 0 chr4 144288014 144288150 -11341970 - Lx9 LINE L1 -5 7639 7491 4 1685 1524 243 13 13 chr4 144288330 144288713 -11341407 - Lx9 LINE L1 -181 7463 7081 4 1685 768 205 46 46 chr4 144288724 144288898 -11341222 - B2_Mm2 SINE B2 -19 176 3 4 1685 1348 277 112 16 chr4 144289006 144289523 -11340597 - Lx9 LINE L1 -652 6992 6426 4 1685 3848 141 33 5 chr4 144289530 144290257 -11339863 + Lx3C LINE L1 6125 6973 0 4 1685 453 131 0 0 chr4 144290274 144290358 -11339762 + (A)n Simple_repeat Simple_repeat 1 84 0 4 1685 787 10 20 0 chr4 144290722 144290822 -11339298 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 4 1685 405 0 0 0 chr4 144290832 144290877 -11339243 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1685 332 263 74 38 chr4 144291186 144291479 -11338641 - Lx9 LINE L1 -1541 6103 5762 4 1685 2118 178 26 3 chr4 144291572 144291949 -11338171 + ORR1B1 LTR MaLR 1 386 -8 4 1685 247 269 0 0 chr4 144291952 144292004 -11338116 + MTC-int LTR MaLR 71 122 -1136 4 1685 775 289 29 38 chr4 144292008 144292433 -11337687 + Lx7 LINE L1 5443 5892 -1804 4 1685 738 140 0 0 chr4 144295595 144295738 -11334382 + Lx4A LINE L1 1170 1312 -5774 4 1685 11767 121 61 142 chr4 144295717 144298156 -11331964 + Lx4A LINE L1 3248 5459 -418 4 1685 2457 40 0 0 chr4 144298156 144298452 -11331668 + L1Md_A LINE L1 6287 6582 0 4 1685 11767 121 61 142 chr4 144298452 144298502 -11331618 + Lx4A LINE L1 5460 5495 -382 4 1685 2768 108 52 41 chr4 144298502 144298944 -11331176 - L1_Mus4 LINE L1 -2 6634 6188 4 1685 11767 136 52 51 chr4 144298944 144299983 -11330137 + Lx4A LINE L1 5496 6592 -466 4 1685 19018 162 13 12 chr4 144299967 144304419 -11325701 - MusHAL1 LINE L1 -836 5050 598 4 1685 1327 224 67 29 chr4 144304420 144304626 -11325494 - RLTR22_Mur LTR ERVK -937 385 164 4 1685 822 103 18 12 chr4 144304626 144304793 -11325327 + (TAGA)n Simple_repeat Simple_repeat 1 168 0 4 1685 1327 149 66 31 chr4 144304793 144304956 -11325164 - RLTR22_Mur LTR ERVK -1679 169 1 4 1685 328 129 94 0 chr4 144304960 144305045 -11325075 + Lx4A LINE L1 6965 7057 -1 4 1685 998 319 47 96 chr4 144306122 144306759 -11323361 + RMER15-int LTR ERVL 2149 2754 -2245 5 1685 1018 178 17 14 chr4 144307043 144307237 -11322883 - B2_Mm2 SINE B2 -15 201 2 5 1685 1086 260 43 9 chr4 144307294 144307620 -11322500 + RMER15-int LTR ERVL 4136 4472 -527 5 1685 2037 253 57 66 chr4 144307733 144308896 -11321224 + RMER1B Other Other 3 856 -174 5 1685 1361 301 48 17 chr4 144308934 144309397 -11320723 + Lx5 LINE L1 6466 6942 -108 5 1686 1075 77 28 0 chr4 144310413 144310556 -11319564 + B1_Mus2 SINE Alu 1 147 0 5 1686 1012 207 58 5 chr4 144310695 144310918 -11319202 + Lx3C LINE L1 6731 6965 -11 5 1686 450 0 0 0 chr4 144310919 144310969 -11319151 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 1686 461 316 29 29 chr4 144311834 144311974 -11318146 + RSINE1 SINE B4 4 143 -22 5 1686 694 275 81 87 chr4 144311990 144312183 -11317937 + RLTR9A LTR ERVK 1 206 -162 5 1686 4273 44 5 32 chr4 144312183 144312743 -11317377 + L1Md_F3 LINE L1 6040 6584 0 5 1686 694 275 81 87 chr4 144312743 144312919 -11317201 + RLTR9A LTR ERVK 207 368 0 5 1686 215 122 0 20 chr4 144313241 144313291 -11316829 + (TAAAA)n Simple_repeat Simple_repeat 5 53 0 5 1686 423 0 0 0 chr4 144313306 144313353 -11316767 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1686 803 172 117 127 chr4 144313378 144313677 -11316443 + ETnERV2-int LTR ERVK 2077 2372 -4872 5 1686 33661 66 3 2 chr4 144313716 144319917 -11310203 - L1Md_F2 LINE L1 -1 6581 440 5 1686 7230 72 4 2 chr4 144319917 144320924 -11309196 + L1Md_F2 LINE L1 4577 5585 -298 5 1686 7800 60 4 4 chr4 144320925 144321921 -11308199 + L1Md_F2 LINE L1 5587 6582 0 5 1686 952 211 57 89 chr4 144321933 144322214 -11307906 + ETnERV2-int LTR ERVK 2418 2689 -4717 5 1686 1147 91 18 6 chr4 144322215 144322381 -11307739 + B2_Mm2 SINE B2 23 190 -5 5 1686 10825 157 84 18 chr4 144322383 144324697 -11305423 + RMER16-int LTR ERVK 1572 3866 -1540 5 1686 664 306 90 56 chr4 144325252 144325608 -11304512 + RLTR9A LTR ERVK 1 368 0 5 1686 22 35 0 0 chr4 144326021 144326050 -11304070 + AT_rich Low_complexity Low_complexity 1 29 0 5 1686 893 289 64 50 chr4 144326054 144326791 -11303329 + L1_Mur3 LINE L1 2180 2926 -2954 5 1686 6746 80 8 3 chr4 144326875 144327764 -11302356 - RLTR13B1 LTR ERVK 0 893 1 5 1686 4664 49 20 0 chr4 144327798 144328386 -11301734 - L1Md_F3 LINE L1 -1 6583 5984 5 1686 1572 149 0 7 chr4 144328387 144328658 -11301462 - Lx LINE L1 -47 6607 6339 5 1686 1493 122 0 0 chr4 144328662 144328884 -11301236 + Lx LINE L1 6109 6330 -324 5 1686 265 297 31 8 chr4 144328877 144329006 -11301114 + L1M2 LINE L1 5144 5275 -868 5 1686 207 0 0 0 chr4 144329009 144329032 -11301088 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1686 561 267 128 0 chr4 144329164 144329344 -11300776 - B3 SINE B2 -11 205 3 5 1686 231 291 78 0 chr4 144329350 144329453 -11300667 + L1M2 LINE L1 5436 5546 -754 5 1686 1980 211 48 10 chr4 144329456 144329854 -11300266 + MTC LTR MaLR 1 413 -8 5 1686 472 295 6 31 chr4 144329914 144330075 -11300045 + Lx7 LINE L1 5619 5775 -1921 5 1686 1654 271 115 31 chr4 144330254 144330547 -11299573 + RMER1C Other Other 675 999 -343 5 1686 180 0 0 0 chr4 144330547 144330567 -11299553 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1686 1654 271 115 31 chr4 144330567 144330889 -11299231 + RMER1C Other Other 1000 1342 0 5 1686 5361 88 1 15 chr4 144330995 144332341 -11297779 + L1Md_A LINE L1 403 1949 -3934 5 1686 1504 315 79 25 chr4 144332342 144332948 -11297172 + MTE-int LTR MaLR 819 1457 -123 5 1686 6792 68 70 19 chr4 144336885 144336975 -11293145 - Lx3_Mus LINE L1 0 7009 6907 5 1686 225 0 0 0 chr4 144336975 144337000 -11293120 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 5 1686 6792 68 70 19 chr4 144337000 144337876 -11292244 - Lx3_Mus LINE L1 -103 6906 5994 5 1686 1463 65 0 65 chr4 144337876 144338107 -11292013 + Lx3_Mus LINE L1 5744 5959 -1050 5 1686 1307 287 46 38 chr4 144338185 144338682 -11291438 + RMER15-int LTR ERVL 2208 2708 -2291 5 1686 1970 293 98 32 chr4 144338807 144339904 -11290216 + RMER15-int LTR ERVL 3824 4993 -6 5 1686 885 240 134 9 chr4 144340473 144340696 -11289424 - Lx5 LINE L1 0 7050 6800 5 1686 263 263 40 0 chr4 144340696 144340772 -11289348 + RMER15-int LTR ERVL 4271 4349 -650 5 1686 6136 179 48 12 chr4 144340823 144342923 -11287197 - Lx5 LINE L1 -236 6822 4571 5 1686 8749 95 11 4 chr4 144342923 144344264 -11285856 + L1_Mm LINE L1 3526 4876 -1007 5 1686 2460 66 6 15 chr4 144344264 144344636 -11285484 - L1Md_A LINE L1 0 6582 6247 5 1686 2539 156 14 2 chr4 144344636 144345124 -11284996 - Lx5 LINE L1 -1677 4200 3707 5 1686 1245 159 91 12 chr4 144345146 144345400 -11284720 - Lx4A LINE L1 -2 7056 6783 5 1686 5925 143 55 10 chr4 144345397 144346443 -11283677 + Lx4A LINE L1 5635 6728 -330 5 1686 639 0 0 0 chr4 144346565 144346636 -11283484 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 5 1686 545 239 53 0 chr4 144346819 144346932 -11283188 - B1_Mus2 SINE Alu -19 128 10 5 1686 33529 42 5 8 chr4 144347011 144351999 -11278121 + L1Md_A LINE L1 622 5586 -297 5 1686 7921 55 1 4 chr4 144351999 144352998 -11277122 + L1Md_F2 LINE L1 5587 6582 0 5 1686 3711 98 173 5 chr4 144353103 144353735 -11276385 - Lx3_Mus LINE L1 0 7009 6272 5 1686 1428 95 71 0 chr4 144353734 144353987 -11276133 + Lx3_Mus LINE L1 5890 6160 -849 5 1686 1005 72 14 0 chr4 144353990 144354128 -11275992 - Lx3_Mus LINE L1 -306 6703 6564 5 1686 713 122 9 0 chr4 144354127 144354242 -11275878 + Lx3_Mus LINE L1 6161 6276 -733 5 1686 198 0 0 0 chr4 144354545 144354567 -11275553 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 1686 1059 122 0 0 chr4 144354625 144354772 -11275348 - B1_Mus1 SINE Alu 0 148 2 5 1686 869 297 0 8 chr4 144354779 144355040 -11275080 + Lx6 LINE L1 7186 7444 -16 5 1686 702 234 6 19 chr4 144355530 144355691 -11274429 - U1 snRNA snRNA -2 163 5 5 1686 582 294 89 4 chr4 144356054 144356251 -11273869 + B3A SINE B2 2 215 -1 5 1686 384 281 95 19 chr4 144356263 144356373 -11273747 + Lx9 LINE L1 7232 7355 -289 5 1686 1179 0 0 0 chr4 144356373 144356504 -11273616 + (GA)n Simple_repeat Simple_repeat 2 132 0 5 1686 384 281 95 19 chr4 144356504 144356603 -11273517 + Lx9 LINE L1 7356 7456 -188 5 1686 414 329 13 38 chr4 144356901 144357059 -11273061 + MTE-int LTR MaLR 216 369 -1211 5 1686 1988 343 95 36 chr4 144357540 144358592 -11271528 + MTE-int LTR MaLR 382 1495 -85 5 1686 416 323 29 10 chr4 144358599 144358759 -11271361 + ORR1E LTR MaLR 1 160 -224 5 1686 3099 61 18 2 chr4 144359230 144359624 -11270496 - MTB LTR MaLR 0 400 1 5 1686 736 207 314 80 chr4 144359661 144360103 -11270017 + RLTR20C LTR ERVK 1 539 -12 5 1686 35999 52 6 7 chr4 144360704 144367063 -11263057 - L1Md_F2 LINE L1 -4 6578 232 5 1686 205 380 11 11 chr4 144368171 144368264 -11261856 - MIRc SINE MIR -64 204 112 5 1686 1281 269 54 14 chr4 144371585 144372011 -11258109 + RMER15-int LTR ERVL 4159 4601 -398 5 1686 9393 133 77 64 chr4 144372147 144373486 -11256634 + RLTR22_Mur LTR ERVK 1 1309 -539 5 1686 564 15 0 0 chr4 144373486 144373551 -11256569 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1686 9393 133 77 64 chr4 144373551 144374036 -11256084 + RLTR22_Mur LTR ERVK 1310 1847 -1 5 1686 411 306 14 55 chr4 144374044 144374262 -11255858 + RMER15-int LTR ERVL 4787 4995 -4 5 1686 24 32 0 0 chr4 144374695 144374726 -11255394 + AT_rich Low_complexity Low_complexity 1 31 0 5 1686 230 329 59 33 chr4 144375253 144375427 -11254693 - MIR SINE MIR -48 220 30 5 1686 214 276 21 31 chr4 144376020 144376117 -11254003 + A-rich Low_complexity Low_complexity 4 99 0 5 1686 893 144 35 25 chr4 144376689 144376889 -11253231 + MYSERV6-int LTR ERVK 6017 6218 -2741 5 1686 331 133 15 91 chr4 144376945 144377011 -11253109 + PB1D9 SINE Alu 11 71 -49 5 1686 391 152 13 0 chr4 144377011 144377090 -11253030 + MYSERV6-int LTR ERVK 6363 6442 -2517 5 1686 4890 153 34 1 chr4 144377092 144378095 -11252025 + Lx4B LINE L1 5441 6486 -572 5 1686 466 268 14 34 chr4 144378097 144378244 -11251876 + RLTR22_Mur LTR ERVK 1 144 -1704 5 1686 6295 120 25 58 chr4 144378276 144378768 -11251352 + L1_Mur2 LINE L1 4265 4740 -1137 5 1686 1963 85 7 24 chr4 144378768 144379058 -11251062 + L1_Mus2 LINE L1 6281 6565 -1 5 1686 6295 120 25 58 chr4 144379058 144379762 -11250358 + L1_Mur2 LINE L1 4741 5421 -456 5 1686 1186 137 98 0 chr4 144379766 144379971 -11250149 + Lx4B LINE L1 6663 6887 -171 5 1686 656 253 25 19 chr4 144380722 144380883 -11249237 + RSINE1 SINE B4 4 165 0 5 1686 219 296 0 0 chr4 144380883 144380937 -11249183 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1686 211 383 95 61 chr4 144380982 144381246 -11248874 + B4 SINE B4 2 274 -18 5 1686 1176 176 29 142 chr4 144381310 144381661 -11248459 - RMER1C Other Other -1 1341 1031 5 1686 1667 53 0 0 chr4 144382102 144382311 -11247809 + L1Md_T LINE L1 6374 6582 0 5 1686 1786 296 55 19 chr4 144382754 144383349 -11246771 - RMER1C Other Other -351 991 375 5 1686 933 283 59 25 chr4 144383945 144384539 -11245581 + L1_Mur3 LINE L1 2320 2933 -2947 5 1686 351 164 0 0 chr4 144384710 144384771 -11245349 + MYSERV6-int LTR ERVK 8832 8892 -67 5 1686 382 200 0 0 chr4 144384842 144384912 -11245208 + RLTR19-int LTR ERVK 4040 4109 -2028 5 1686 773 252 23 66 chr4 144384990 144385249 -11244871 + RLTR19-int LTR ERVK 4134 4381 -1756 5 1686 26174 104 5 7 chr4 144385908 144392202 -11237918 - L1_Mus2 LINE L1 -1 6565 266 5 1686 4140 171 7 21 chr4 144392739 144393674 -11236446 - L1_Mur3 LINE L1 -3975 1902 984 5 1686 814 330 41 35 chr4 144394961 144395768 -11234352 - MurERV4-int LTR ERVK -3682 3571 2556 5 1686 2630 87 30 8 chr4 144397070 144397464 -11232656 + RLTR9D LTR ERVK 1 403 0 5 1686 4746 172 10 42 chr4 144398675 144399595 -11230525 + Lx4B LINE L1 5907 6796 -262 5 1686 288 239 59 17 chr4 144399592 144399711 -11230409 + Lx4B LINE L1 6934 7057 -1 5 1686 371 235 31 56 chr4 144401950 144402112 -11228008 - RNLTR23 LTR ERVK -3 639 482 5 1686 2402 276 58 24 chr4 144402814 144403009 -11227111 - RNERVK23-int LTR ERVK -405 7812 7587 5 1686 667 0 12 12 chr4 144403009 144403093 -11227027 + (TC)n Simple_repeat Simple_repeat 2 85 0 5 1686 392 0 21 0 chr4 144403093 144403140 -11226980 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1686 2402 276 58 24 chr4 144403140 144403695 -11226425 - RNERVK23-int LTR ERVK -631 7586 7036 5 1686 597 288 6 0 chr4 144403700 144403870 -11226250 - RNERVK23-int LTR ERVK -3876 4341 4171 5 1686 487 114 0 0 chr4 144403870 144403940 -11226180 - tRNA-Lys-AAG tRNA tRNA -6 70 1 5 1686 1848 335 36 51 chr4 144403940 144405096 -11225024 - RNERVK23-int LTR ERVK -6232 1985 847 5 1686 21 0 0 0 chr4 144405902 144405923 -11224197 + AT_rich Low_complexity Low_complexity 1 21 0 5 1686 24 0 0 0 chr4 144406245 144406269 -11223851 + AT_rich Low_complexity Low_complexity 1 24 0 5 1686 1256 66 0 0 chr4 144406340 144406507 -11223613 - L1Md_A LINE L1 0 6582 6416 5 1686 254 206 16 16 chr4 144406531 144406595 -11223525 - RNERVK23-int LTR ERVK -7708 509 446 5 1686 36319 48 0 3 chr4 144406595 144412124 -11217996 + L1Md_T LINE L1 1 5589 -297 5 1686 8630 32 0 0 chr4 144412124 144413120 -11217000 + L1Md_T LINE L1 5590 6585 0 5 1686 991 266 10 34 chr4 144413122 144413418 -11216702 - RNERVK23-int LTR ERVK -7758 459 171 5 1686 491 223 12 54 chr4 144413604 144413770 -11216350 - RNLTR23 LTR ERVK -4 638 480 5 1686 1187 278 137 11 chr4 144414699 144415165 -11214955 + RLTR11A2 LTR ERVK 3 527 0 5 1686 191 88 29 0 chr4 144416635 144416669 -11213451 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1686 6461 50 1 5 chr4 144416931 144417728 -11212392 + L1Md_F2 LINE L1 5786 6579 -3 5 1686 7413 126 16 33 chr4 144417752 144418159 -11211961 + MurERV4_19-int LTR ERVK 3880 4268 -1512 5 1686 675 91 9 0 chr4 144418159 144418269 -11211851 - L1_Mus1 LINE L1 0 6567 6457 5 1686 7413 126 16 33 chr4 144418269 144419085 -11211035 + MurERV4_19-int LTR ERVK 4269 5082 -698 5 1686 322 102 0 0 chr4 144419086 144419135 -11210985 + Lx4B LINE L1 5925 5973 -1085 6 1686 25247 162 21 18 chr4 144419131 144422342 -11207778 - Lx2B LINE L1 -952 6048 2796 6 1686 3091 71 107 14 chr4 144422342 144422783 -11207337 - L1_Mus3 LINE L1 0 6638 6157 6 1686 548 29 14 0 chr4 144422784 144422854 -11207266 + (TTA)n Simple_repeat Simple_repeat 1 71 0 6 1686 25247 170 31 22 chr4 144422854 144425001 -11205119 - Lx2B LINE L1 -3091 2795 670 6 1686 238 235 123 0 chr4 144425030 144425111 -11205009 - Lx2B LINE L1 -6092 892 802 6 1686 265 222 123 0 chr4 144425134 144425215 -11204905 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144425238 144425319 -11204801 - Lx2B LINE L1 -6092 892 802 6 1686 238 235 123 0 chr4 144425342 144425423 -11204697 - L1_Mur1 LINE L1 -6092 890 800 6 1686 265 222 123 0 chr4 144425446 144425527 -11204593 - Lx2B LINE L1 -6092 892 802 6 1686 241 247 123 0 chr4 144425550 144425631 -11204489 - L1_Mur1 LINE L1 -6092 890 800 6 1686 246 215 277 0 chr4 144425654 144425784 -11204336 - Lx2B LINE L1 -6092 892 727 6 1686 265 222 123 0 chr4 144425784 144425865 -11204255 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144425888 144425969 -11204151 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144425992 144426073 -11204047 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144426096 144426177 -11203943 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144426200 144426281 -11203839 - L1_Mur1 LINE L1 -6092 890 800 6 1686 238 235 123 0 chr4 144426304 144426385 -11203735 - L1_Mur1 LINE L1 -6092 890 800 6 1686 927 216 152 76 chr4 144427200 144427490 -11202630 + RMER19C LTR ERVK 16 327 -284 6 1686 1780 135 3 40 chr4 144427488 144427813 -11202307 - RLTR19 LTR ERVK -186 313 1 6 1686 3996 181 33 16 chr4 144428031 144428737 -11201383 + Lx5 LINE L1 6333 7050 0 6 1686 4433 16 0 12 chr4 144428744 144429243 -11200877 + MT2_Mm LTR ERVL 1 493 0 6 1686 12704 10 3 4 chr4 144429243 144430645 -11199475 + MERVL-int LTR ERVL 1 1401 -4084 6 1686 3005 21 0 0 chr4 144430645 144430982 -11199138 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1686 13113 48 62 23 chr4 144430982 144432681 -11197439 + IAPEz-int LTR ERVK 8 1773 -4708 6 1686 12866 19 1 4 chr4 144432668 144434108 -11196012 + IAPEz-int LTR ERVK 5046 6481 0 6 1686 2561 25 0 0 chr4 144434108 144434432 -11195688 + IAPLTR1a_Mm LTR ERVK 1 324 -13 6 1686 35839 18 0 0 chr4 144434432 144438377 -11191743 + MERVL-int LTR ERVL 1415 5360 -125 6 1686 352 144 58 46 chr4 144438377 144438464 -11191656 + ORR1A3-int LTR MaLR 553 640 -1323 6 1686 321 0 0 0 chr4 144438464 144438502 -11191618 + MERVL-int LTR ERVL 5448 5485 0 6 1686 4373 16 0 35 chr4 144438502 144439013 -11191107 + MT2_Mm LTR ERVL 1 493 0 6 1686 22 56 0 0 chr4 144439085 144439121 -11190999 + AT_rich Low_complexity Low_complexity 1 36 0 6 1686 9220 81 12 10 chr4 144439130 144441266 -11188854 + L1Md_F2 LINE L1 287 2497 -3389 6 210 1953 105 28 22 chr4 144441266 144441586 -11188534 - RLTRETN_Mm LTR ERVK 0 322 1 6 1687 12761 50 5 15 chr4 144441586 144443149 -11186971 - ETnERV-int LTR ERVK 0 3314 1769 6 1687 12886 51 7 11 chr4 144443140 144444797 -11185323 - MMETn-int LTR ERVK -2603 2241 593 6 1687 3917 31 0 7 chr4 144444794 144445250 -11184870 - MMETn-int LTR ERVK -2861 453 1 6 1687 1953 115 28 22 chr4 144445250 144445570 -11184550 - RLTRETN_Mm LTR ERVK 0 322 1 6 1687 23128 73 14 0 chr4 144445570 144448627 -11181493 + L1Md_F2 LINE L1 2492 5589 -297 6 1687 7919 60 2 6 chr4 144448628 144449619 -11180501 + L1Md_F2 LINE L1 5591 6578 -7 6 1687 1004 73 73 0 chr4 144449619 144449756 -11180364 + B1_Mm SINE Alu 1 147 0 6 1687 1790 157 7 32 chr4 144449784 144450093 -11180027 - MTC LTR MaLR -120 301 1 6 1687 919 108 0 48 chr4 144450417 144450563 -11179557 + L1_Mus1 LINE L1 6428 6566 -1 6 1687 24 32 0 0 chr4 144450600 144450631 -11179489 + AT_rich Low_complexity Low_complexity 1 31 0 6 1687 402 252 25 106 chr4 144450811 144451046 -11179074 - Lx8 LINE L1 -1475 5998 5783 6 1687 451 314 30 20 chr4 144452263 144452461 -11177659 - RMER15 LTR ERVL -40 535 336 6 1687 1348 249 39 10 chr4 144454054 144454366 -11175754 - MTEb-int LTR MaLR -1259 321 1 6 1687 878 273 142 24 chr4 144454366 144454704 -11175416 - MTEb LTR MaLR 0 379 2 6 1687 704 250 68 72 chr4 144454709 144454772 -11175348 + L1MB8 LINE L1 5741 5799 -379 6 1687 3488 55 0 9 chr4 144454772 144455209 -11174911 - L1Md_F2 LINE L1 -17 6565 6133 6 1687 704 250 68 72 chr4 144455209 144455395 -11174725 + L1MB8 LINE L1 5800 5989 -189 6 1687 532 289 41 0 chr4 144455490 144455611 -11174509 + ID_B1 SINE B4 2 127 -97 6 1687 899 243 44 0 chr4 144455653 144455859 -11174261 + B3 SINE B2 2 216 0 6 1687 726 231 0 0 chr4 144455882 144456012 -11174108 + B1_Mur2 SINE Alu 17 146 -3 6 1687 304 259 109 16 chr4 144456058 144456199 -11173921 - L1MB8 LINE L1 -245 5933 5781 6 1687 3300 178 81 9 chr4 144456231 144456862 -11173258 - RLTR33 LTR ERVK -2 676 1 6 1687 979 230 89 127 chr4 144457101 144457495 -11172625 + MTE2a LTR MaLR 1 379 0 6 1687 301 351 15 0 chr4 144457565 144457699 -11172421 + L1MB8 LINE L1 6024 6159 -14 6 1687 239 320 20 49 chr4 144457836 144457938 -11172182 + ID_B1 SINE B4 81 179 -45 6 1687 267 296 21 74 chr4 144457854 144457949 -11172171 + PB1D10 SINE Alu 17 106 -11 6 1687 229 240 20 0 chr4 144457927 144457977 -11172143 + B1_Mur4 SINE Alu 13 63 -87 6 1687 326 235 239 15 chr4 144458291 144458425 -11171695 - B4 SINE B4 -4 288 125 6 1687 276 301 0 108 chr4 144458789 144458882 -11171238 - B4A SINE B4 -154 138 56 6 1687 311 161 18 0 chr4 144458924 144458980 -11171140 - HAL1-3A_ME LINE L1 -826 2032 1976 6 1687 329 77 39 0 chr4 144458982 144459034 -11171086 + (TATG)n Simple_repeat Simple_repeat 2 55 0 6 1687 248 229 171 0 chr4 144459161 144459231 -11170889 - L2a LINE L2 -1 3425 3344 6 1687 320 297 35 35 chr4 144459232 144459347 -11170773 - MLT1A1 LTR MaLR 0 408 294 6 1687 282 321 85 26 chr4 144459708 144459897 -11170223 - MIR SINE MIR -27 235 36 6 1687 846 236 7 25 chr4 144460256 144460422 -11169698 + B3A SINE B2 1 162 -36 6 1687 288 0 0 0 chr4 144460422 144460454 -11169666 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1687 489 251 72 103 chr4 144460454 144460482 -11169638 + B2_Mm2 SINE B2 158 189 -6 6 1687 273 57 0 0 chr4 144460655 144460690 -11169430 + (TGG)n Simple_repeat Simple_repeat 1 35 0 6 1687 215 114 23 0 chr4 144461430 144461474 -11168646 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1687 7895 60 6 2 chr4 144461608 144462709 -11167411 - L1_Mus2 LINE L1 -4 6562 5458 6 1687 218 171 24 0 chr4 144463043 144463084 -11167036 - MIR SINE MIR -91 171 130 6 1687 2406 89 0 58 chr4 144463404 144463750 -11166370 - ORR1A3 LTR MaLR 0 326 1 6 1687 1083 253 77 40 chr4 144463799 144464124 -11165996 + MT2A LTR ERVL 189 525 -8 6 1687 232 271 14 145 chr4 144464207 144464276 -11165844 - ID4_ SINE ID -23 60 1 6 1687 1016 39 0 8 chr4 144464361 144464491 -11165629 + (TCTCC)n Simple_repeat Simple_repeat 3 131 0 6 1687 827 243 62 5 chr4 144466074 144466285 -11163835 + ID_B1 SINE B4 1 223 -1 6 1687 875 200 80 30 chr4 144466411 144466612 -11163508 - B3 SINE B2 -5 211 1 6 1687 848 206 194 0 chr4 144466763 144466943 -11163177 - B3 SINE B2 0 216 2 6 1687 607 165 0 35 chr4 144466978 144467091 -11163029 - B1_Mur4 SINE Alu -1 149 41 6 1687 336 222 20 91 chr4 144467080 144467179 -11162941 - B3A SINE B2 -104 94 3 6 1687 207 125 0 0 chr4 144467207 144467247 -11162873 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 6 1687 839 149 22 7 chr4 144467248 144467383 -11162737 - B1_Mur2 SINE Alu 0 149 13 6 1687 25 0 0 0 chr4 144467390 144467415 -11162705 + AT_rich Low_complexity Low_complexity 1 25 0 6 1687 2972 239 89 57 chr4 144467443 144468274 -11161846 + RMER13A LTR ERVK 1 858 -2 6 1687 221 398 12 0 chr4 144468275 144468358 -11161762 - B3A SINE B2 -26 172 89 6 1687 683 229 87 17 chr4 144468373 144468546 -11161574 + B4A SINE B4 90 274 -18 6 1687 312 27 0 0 chr4 144468588 144468625 -11161495 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1687 1022 144 193 0 chr4 144468758 144468939 -11161181 + B3 SINE B2 1 216 0 6 1687 273 125 0 0 chr4 144469047 144469103 -11161017 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1687 755 302 43 25 chr4 144469179 144469461 -11160659 - B4A SINE B4 -5 287 1 6 1687 2175 264 99 133 chr4 144470231 144471600 -11158520 + RMER12 LTR ERVK 1 1322 0 6 1687 649 294 12 0 chr4 144471718 144471881 -11158239 + ID_B1 SINE B4 33 197 -27 6 1687 781 253 16 16 chr4 144471933 144472118 -11158002 + B3A SINE B2 14 198 0 6 1687 342 197 66 180 chr4 144472374 144472541 -11157579 + MT2B LTR ERVL 131 278 -323 6 1687 784 92 0 91 chr4 144472410 144472542 -11157578 + B1_Mur4 SINE Alu 5 124 -26 6 1687 741 231 106 0 chr4 144473516 144473676 -11156444 + ID_B1 SINE B4 2 178 -46 6 1687 306 0 0 0 chr4 144473678 144473712 -11156408 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1687 862 189 189 0 chr4 144473783 144473927 -11156193 + B3 SINE B2 1 147 -69 6 1687 429 81 0 0 chr4 144473927 144473989 -11156131 + (CATA)n Simple_repeat Simple_repeat 2 63 0 6 1687 862 189 189 0 chr4 144473989 144474024 -11156096 + B3 SINE B2 148 213 -3 6 1687 229 312 102 91 chr4 144474029 144474304 -11155816 + RMER12 LTR ERVK 713 990 -332 6 1687 1161 82 0 0 chr4 144475060 144475206 -11154914 + B1_Mus1 SINE Alu 2 147 -1 6 1687 494 173 156 0 chr4 144475256 144475414 -11154706 - ID_B1 SINE B4 -23 201 4 6 1687 492 32 0 0 chr4 144475660 144475722 -11154398 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1687 396 0 0 0 chr4 144475722 144475765 -11154355 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1687 384 184 89 33 chr4 144475904 144475994 -11154126 - PB1D10 SINE Alu -1 116 22 6 1687 344 185 29 58 chr4 144475994 144476063 -11154057 - ID4 SINE ID -14 69 3 6 1687 526 278 23 16 chr4 144476113 144476241 -11153879 + RSINE1 SINE B4 37 165 0 6 1687 417 39 0 0 chr4 144476368 144476419 -11153701 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1687 269 347 0 26 chr4 144476938 144477015 -11153105 - RSINE1 SINE B4 -4 161 87 6 1687 441 217 32 21 chr4 144477001 144477095 -11153025 - PB1D10 SINE Alu -1 116 22 6 1687 308 215 29 58 chr4 144477095 144477164 -11152956 - ID4 SINE ID -14 69 3 6 1687 275 233 33 0 chr4 144477166 144477226 -11152894 - B3A SINE B2 -55 143 82 6 1687 345 274 116 0 chr4 144477830 144477925 -11152195 - B1F1 SINE Alu -43 106 1 6 1687 336 164 0 0 chr4 144478020 144478075 -11152045 - HAL1-3A_ME LINE L1 -828 2030 1976 6 1687 381 145 0 0 chr4 144478075 144478151 -11151969 + (TCTG)n Simple_repeat Simple_repeat 4 79 0 6 1687 771 295 13 92 chr4 144478715 144478989 -11151131 - B4A SINE B4 0 292 38 6 1687 1992 203 41 34 chr4 144478989 144479407 -11150713 - MTC LTR MaLR 0 421 1 6 1687 771 295 13 92 chr4 144479407 144479449 -11150671 - B4A SINE B4 -255 37 1 6 1687 198 0 0 0 chr4 144480165 144480187 -11149933 + (TTG)n Simple_repeat Simple_repeat 1 22 0 6 1687 249 319 20 98 chr4 144480226 144480379 -11149741 + MIRb SINE MIR 88 228 -40 6 1687 191 274 101 40 chr4 144481292 144481391 -11148729 + MER5A DNA MER1_type 50 154 -35 6 1687 207 0 0 0 chr4 144482386 144482409 -11147711 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1687 216 97 0 0 chr4 144483185 144483216 -11146904 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1687 1242 123 0 2 chr4 144485514 144485972 -11144148 + (CA)n Simple_repeat Simple_repeat 1 456 0 6 1687 203 200 0 0 chr4 144486550 144486585 -11143535 + A-rich Low_complexity Low_complexity 1 35 0 7 1687 504 0 0 0 chr4 144486599 144486655 -11143465 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1687 569 203 154 0 chr4 144486671 144486794 -11143326 - B3A SINE B2 -55 143 2 7 1687 399 258 11 0 chr4 144488477 144488566 -11141554 + ID_B1 SINE B4 81 170 -54 7 1687 948 214 0 50 chr4 144488617 144488819 -11141301 - B3A SINE B2 -6 192 1 7 1687 202 345 0 0 chr4 144489930 144489988 -11140132 - L2a LINE L2 -18 3408 3351 7 1687 743 210 30 36 chr4 144490007 144490175 -11139945 - MTEb LTR MaLR 0 379 213 7 1687 297 324 0 0 chr4 144490224 144490295 -11139825 - MTEb LTR MaLR -308 71 1 7 1687 808 238 40 16 chr4 144490397 144490603 -11139517 + B4 SINE B4 42 246 -46 7 1687 204 125 0 0 chr4 144490603 144490635 -11139485 + (GGA)n Simple_repeat Simple_repeat 1 32 0 7 1687 242 262 33 0 chr4 144490635 144490696 -11139424 + B4A SINE B4 224 286 -6 7 1687 365 359 4 5 chr4 144491849 144492020 -11138100 + MIRb SINE MIR 3 174 -34 7 1687 396 276 122 75 chr4 144492253 144492441 -11137679 - MLT1D LTR MaLR -35 470 274 7 1687 753 241 25 6 chr4 144492674 144492837 -11137283 - B3A SINE B2 -31 167 2 7 1687 252 0 0 0 chr4 144492894 144492922 -11137198 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1687 258 213 65 16 chr4 144492970 144493032 -11137088 - MLT1D LTR MaLR -418 87 23 7 1687 404 344 6 35 chr4 144494440 144494609 -11135511 + RSINE1 SINE B4 1 164 -1 7 1687 927 227 9 73 chr4 144494652 144494871 -11135249 + B3 SINE B2 12 216 0 7 1687 863 268 65 11 chr4 144495446 144495721 -11134399 + B4A SINE B4 1 290 -2 7 1687 316 307 57 93 chr4 144497958 144498206 -11131914 + L2a LINE L2 2974 3212 -214 7 1687 580 247 205 40 chr4 144498301 144498550 -11131570 - B4A SINE B4 0 292 3 7 1687 180 333 65 35 chr4 144499342 144499541 -11130579 - L2 LINE L2 -566 2853 2649 7 1687 200 325 65 0 chr4 144499680 144499757 -11130363 + MIRb SINE MIR 110 191 -77 7 1687 338 174 113 28 chr4 144499808 144499879 -11130241 + PB1D7 SINE Alu 43 119 -1 7 1687 192 136 67 22 chr4 144500563 144500608 -11129512 + MIR SINE MIR 92 138 -124 1 1687 1113 270 58 4 chr4 144500913 144501170 -11128950 + B4A SINE B4 2 272 -20 2 1687 450 0 0 0 chr4 144501171 144501221 -11128899 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1687 636 260 77 7 chr4 144502285 144502358 -11127762 + ID SINE ID 4 87 -137 4 1687 225 352 83 0 chr4 144502358 144502466 -11127654 + PB1D10 SINE Alu 1 117 0 5 1687 857 123 14 0 chr4 144502468 144502614 -11127506 + (GGGA)n Simple_repeat Simple_repeat 3 150 0 6 1687 312 309 22 0 chr4 144502656 144502746 -11127374 - PB1D10 SINE Alu -28 99 2 7 1687 431 297 0 8 chr4 144502776 144502895 -11127225 + ID_B1 SINE B4 99 216 -8 8 1687 307 276 0 62 chr4 144502913 144502994 -11127126 + ID4_ SINE ID 1 76 -7 9 1687 783 0 0 0 chr4 144502996 144503083 -11127037 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 1687 513 0 0 0 chr4 144503497 144503554 -11126566 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1687 342 265 162 7 chr4 144503852 144504000 -11126120 + MIRb SINE MIR 90 260 -8 1 1687 977 152 209 0 chr4 144504182 144504359 -11125761 + B3 SINE B2 1 214 -2 1 1687 525 279 9 0 chr4 144504490 144504601 -11125519 - PB1D10 SINE Alu -3 114 3 1 1687 293 343 20 0 chr4 144504513 144504615 -11125505 - ID_B1 SINE B4 -52 172 69 1 1687 753 253 7 0 chr4 144504647 144504793 -11125327 - RSINE1 SINE B4 -17 148 2 1 1687 320 277 37 51 chr4 144505253 144505400 -11124720 + MIR SINE MIR 34 177 -31 1 1687 988 204 39 0 chr4 144506619 144506825 -11123295 + B3 SINE B2 3 216 0 1 1687 810 174 51 61 chr4 144507532 144507728 -11122392 + B3A SINE B2 2 195 -3 1 1687 2473 161 7 12 chr4 144507761 144508169 -11121951 + MTC LTR MaLR 8 413 -8 2 1687 394 263 42 50 chr4 144508206 144508326 -11121794 + RSINE1 SINE B4 47 165 0 2 1687 255 125 0 0 chr4 144508326 144508366 -11121754 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 1687 238 226 32 116 chr4 144508643 144508738 -11121382 - RMER5 LTR ERV1 -372 162 76 2 1687 189 315 178 16 chr4 144509068 144509197 -11120923 - MIRb SINE MIR -14 254 105 2 1687 1015 206 95 9 chr4 144510122 144510333 -11119787 - MTEb LTR MaLR 0 379 151 2 1687 492 258 67 16 chr4 144510394 144510587 -11119533 + L1ME1 LINE L1 5793 5995 -184 2 1687 809 238 0 6 chr4 144510674 144510839 -11119281 + RSINE1 SINE B4 1 164 -1 2 1687 197 83 28 0 chr4 144510848 144510884 -11119236 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1687 182 351 78 0 chr4 144511151 144511228 -11118892 + MIRb SINE MIR 115 197 -71 2 1687 522 0 0 0 chr4 144511819 144511877 -11118243 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1687 699 12 0 0 chr4 144511877 144511956 -11118164 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1687 983 262 8 60 chr4 144512355 144512603 -11117517 + B4 SINE B4 50 284 -8 3 1687 468 128 0 0 chr4 144512615 144512693 -11117427 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1687 386 367 108 13 chr4 144513188 144513562 -11116558 - L2b LINE L2 -13 3413 2992 3 1687 229 246 43 0 chr4 144514042 144514111 -11116009 + MER117 DNA MER1_type 120 191 -6 3 1687 999 161 0 0 chr4 144514183 144514363 -11115757 + CT-rich Low_complexity Low_complexity 1 180 0 3 1687 329 282 110 24 chr4 144514384 144514511 -11115609 - B1F SINE Alu -11 138 1 3 1687 489 179 14 114 chr4 144514511 144514706 -11115414 - Charlie1b DNA MER1_type -44 479 318 3 1687 665 281 66 22 chr4 144514976 144515202 -11114918 - Charlie1b DNA MER1_type -187 336 101 3 1687 477 304 159 6 chr4 144515203 144515385 -11114735 + ID_B1 SINE B4 2 211 -13 3 1687 1062 82 0 0 chr4 144515409 144515555 -11114565 + (GGAA)n Simple_repeat Simple_repeat 4 149 0 4 1687 699 12 0 0 chr4 144515582 144515662 -11114458 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1687 416 200 13 0 chr4 144516218 144516293 -11113827 + B4A SINE B4 3 78 -214 4 1687 240 330 29 29 chr4 144516293 144516321 -11113799 + B3A SINE B2 3 105 -93 4 1687 696 285 5 27 chr4 144516377 144516561 -11113559 + B3A SINE B2 2 181 -17 4 1687 337 277 18 12 chr4 144518703 144518801 -11111319 - MLT1I LTR MaLR -237 174 74 4 1687 585 0 0 0 chr4 144519266 144519331 -11110789 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1687 848 236 74 20 chr4 144520577 144520780 -11109340 + ID_B1 SINE B4 2 215 -9 4 1687 299 286 13 13 chr4 144520807 144520885 -11109235 + RSINE1 SINE B4 2 79 -86 4 1687 1163 278 99 23 chr4 144521172 144521514 -11108606 - MTE2a LTR MaLR -9 370 3 4 1687 276 142 25 112 chr4 144521757 144521838 -11108282 - MLT2B5 LTR ERVL 0 556 477 5 1687 204 255 20 0 chr4 144521838 144521889 -11108231 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 5 1687 1228 217 64 96 chr4 144521893 144522323 -11107797 - MT2A LTR ERVL -40 561 1 5 1687 240 100 0 0 chr4 144522545 144522585 -11107535 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 5 1687 789 267 67 16 chr4 144522596 144522883 -11107237 + L1M2 LINE L1 3867 4169 -1974 5 1687 189 0 0 0 chr4 144522883 144522904 -11107216 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1687 789 267 67 16 chr4 144522904 144522928 -11107192 + L1M2 LINE L1 4170 4193 -1950 5 1687 247 256 11 79 chr4 144522937 144522956 -11107164 - L1M5 LINE L1 -362 5822 5805 5 1687 1581 176 41 236 chr4 144522956 144523490 -11106630 + RLTR23 LTR ERV1 1 430 0 5 1687 274 243 15 30 chr4 144523490 144523559 -11106561 - L1M5 LINE L1 -373 5806 5740 5 1687 1035 145 0 7 chr4 144523970 144524123 -11105997 + ORR1D1 LTR MaLR 1 152 -222 5 1687 933 169 0 13 chr4 144524128 144524278 -11105842 + B1_Mur3 SINE Alu 2 149 0 5 1687 227 302 90 25 chr4 144524938 144525060 -11105060 + MIRc SINE MIR 20 149 -119 6 1687 255 316 25 0 chr4 144525213 144525292 -11104828 - MIR SINE MIR -169 93 13 6 1687 972 70 0 0 chr4 144525522 144525664 -11104456 + (TC)n Simple_repeat Simple_repeat 2 143 0 6 1687 389 118 29 0 chr4 144525665 144525733 -11104387 + (TCTCC)n Simple_repeat Simple_repeat 2 71 0 6 1687 395 296 96 42 chr4 144525799 144525965 -11104155 + B4A SINE B4 1 175 -117 6 1687 1230 113 22 0 chr4 144526037 144526222 -11103898 + B2_Mm2 SINE B2 1 189 -6 6 1687 599 79 22 0 chr4 144526265 144526354 -11103766 + (CATA)n Simple_repeat Simple_repeat 2 92 0 6 1687 365 341 145 51 chr4 144526478 144526713 -11103407 - MLT1K LTR MaLR -331 264 8 6 1687 240 86 0 0 chr4 144527345 144527380 -11102740 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1687 345 141 0 0 chr4 144527380 144527451 -11102669 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 6 1687 530 301 0 0 chr4 144528638 144528791 -11101329 + L1ME3A LINE L1 5785 5937 -236 7 1687 719 250 158 14 chr4 144529103 144529318 -11100802 + B4A SINE B4 1 246 -46 7 1687 1863 130 110 15 chr4 144529307 144529634 -11100486 + ORR1B2 LTR MaLR 10 367 0 7 1687 1360 207 172 11 chr4 144529967 144530328 -11099792 - MTD LTR MaLR 0 419 1 7 1687 445 303 45 6 chr4 144530512 144530668 -11099452 + RSINE1 SINE B4 3 164 -1 7 1687 1441 219 106 9 chr4 144531883 144532205 -11097915 + MTEb LTR MaLR 12 364 -15 7 1687 526 124 30 3 chr4 144533428 144533541 -11096579 + B1_Mus2 SINE Alu 32 149 0 7 1687 243 0 0 0 chr4 144533550 144533577 -11096543 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1687 2724 69 0 0 chr4 144533589 144533936 -11096184 - Lx LINE L1 -659 5995 5649 7 1687 4031 120 101 2 chr4 144533936 144534561 -11095559 + Lx LINE L1 5965 6651 -3 7 1687 642 184 175 14 chr4 144534592 144534735 -11095385 + ID_B1 SINE B4 3 168 -56 7 1687 367 271 36 27 chr4 144534651 144534761 -11095359 + PB1D10 SINE Alu 5 115 -2 8 1687 186 191 0 0 chr4 144534838 144534885 -11095235 + GA-rich Low_complexity Low_complexity 2 48 0 8 1687 28 29 0 0 chr4 144534917 144534952 -11095168 + AT_rich Low_complexity Low_complexity 1 35 0 8 1687 399 316 64 91 chr4 144534959 144535229 -11094891 + B4 SINE B4 5 269 -23 8 1687 270 0 0 0 chr4 144535229 144535259 -11094861 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1687 399 316 64 91 chr4 144535259 144535284 -11094836 + B4 SINE B4 270 292 0 8 1687 207 69 0 0 chr4 144535647 144535676 -11094444 + (TTA)n Simple_repeat Simple_repeat 2 30 0 8 1687 691 176 87 47 chr4 144535686 144535835 -11094285 - RSINE1 SINE B4 -8 157 3 8 1687 591 85 0 0 chr4 144535873 144535955 -11094165 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1687 1031 255 106 8 chr4 144535958 144536203 -11093917 - B4 SINE B4 -21 271 3 8 1687 408 82 0 0 chr4 144536258 144536319 -11093801 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1687 277 245 42 68 chr4 144536325 144536443 -11093677 - Lx6 LINE L1 -30 7430 7316 9 1687 919 213 202 37 chr4 144536535 144536564 -11093556 - Lx7 LINE L1 -358 7338 7315 9 1687 648 170 19 84 chr4 144536564 144536705 -11093415 + B1_Mur3 SINE Alu 1 137 -12 9 1687 585 0 0 0 chr4 144536705 144536770 -11093350 + (CAAAA)n Simple_repeat Simple_repeat 4 68 0 9 1687 648 170 19 84 chr4 144536770 144536782 -11093338 + B1_Mur3 SINE Alu 138 144 -5 9 1687 919 213 202 37 chr4 144536782 144537074 -11093046 - Lx7 LINE L1 -382 7314 6964 9 1687 615 39 0 0 chr4 144537197 144537275 -11092845 + (TC)n Simple_repeat Simple_repeat 1 78 0 9 1687 540 30 0 0 chr4 144537275 144537340 -11092780 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1687 213 287 186 31 chr4 144537351 144537448 -11092672 - L2c LINE L2 0 3387 3276 9 1687 725 266 0 7 chr4 144538726 144538870 -11091250 + RSINE1 SINE B4 2 144 -21 9 1687 549 0 0 0 chr4 144538872 144538933 -11091187 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1687 256 339 71 1 chr4 144539001 144539160 -11090960 - MIR SINE MIR -65 203 31 9 1687 567 0 0 0 chr4 144539745 144539808 -11090312 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1687 239 295 26 0 chr4 144540585 144540663 -11089457 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1687 327 320 50 55 chr4 144541110 144541296 -11088824 + LTR33 LTR ERVL 3 196 -335 1 1687 582 265 9 155 chr4 144541305 144541537 -11088583 + MTE2b LTR MaLR 4 201 -178 1 1687 2896 287 120 55 chr4 144541550 144543126 -11086994 + Lx8 LINE L1 5119 6757 -716 1 1687 393 22 0 0 chr4 144543126 144543172 -11086948 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 1687 2896 291 85 85 chr4 144543172 144543512 -11086608 + Lx8 LINE L1 6758 7133 -340 1 1687 675 0 0 0 chr4 144543607 144543682 -11086438 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 1 1687 879 149 89 6 chr4 144543708 144543877 -11086243 + Lx3C LINE L1 6792 6974 -2 1 1687 259 271 77 66 chr4 144543887 144543899 -11086221 + B4 SINE B4 78 165 -123 1 1687 370 156 22 16 chr4 144543899 144543974 -11086146 + B1_Mur4 SINE Alu 4 85 -65 1 1687 391 282 188 0 chr4 144544089 144544206 -11085914 - RSINE1 SINE B4 -26 139 1 1 1687 566 233 86 19 chr4 144544215 144544425 -11085695 + L1MEg LINE L1 1012 1235 -4849 1 1687 640 359 25 42 chr4 144544439 144544680 -11085440 + B4A SINE B4 14 250 -42 1 1687 355 228 152 0 chr4 144544752 144544844 -11085276 - ORR1E LTR MaLR -249 110 5 1 1687 352 264 38 46 chr4 144545004 144545135 -11084985 + RMER15 LTR ERVL 1 130 -445 1 1687 936 283 36 11 chr4 144545173 144545452 -11084668 + RMER15 LTR ERVL 273 558 -17 1 1687 343 287 33 13 chr4 144545451 144545546 -11084574 - B1F1 SINE Alu -63 86 2 1 1687 250 340 0 40 chr4 144545650 144545751 -11084369 - MLT1A1 LTR MaLR -311 97 1 1 1687 531 296 158 30 chr4 144545768 144546231 -11083889 + L1MC4a LINE L1 5443 5964 -1918 1 1687 22 0 0 0 chr4 144546663 144546685 -11083435 + AT_rich Low_complexity Low_complexity 1 22 0 1 1687 653 209 149 4 chr4 144546687 144546823 -11083297 + B3 SINE B2 10 159 -57 1 1687 528 16 0 0 chr4 144546823 144546884 -11083236 + (CATA)n Simple_repeat Simple_repeat 3 63 0 1 1687 608 226 49 82 chr4 144546884 144546930 -11083190 + B2_Mm2 SINE B2 148 186 -9 1 1687 285 355 63 36 chr4 144548167 144548200 -11081920 + B4A SINE B4 54 89 -203 1 1687 444 256 47 0 chr4 144548200 144548286 -11081834 + B1F SINE Alu 1 90 -59 1 1687 201 74 0 0 chr4 144548295 144548322 -11081798 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1687 388 221 153 16 chr4 144548335 144548459 -11081661 + B1F SINE Alu 2 142 -7 1 1687 300 281 58 0 chr4 144548573 144548694 -11081426 + Charlie5 DNA MER1_type 2407 2534 -90 1 1687 407 263 84 0 chr4 144548696 144548791 -11081329 + PB1D10 SINE Alu 2 104 -13 1 1687 402 152 40 8 chr4 144548966 144549092 -11081028 + (TG)n Simple_repeat Simple_repeat 2 131 0 1 1687 477 210 89 20 chr4 144549093 144549239 -11080881 - RSINE1 SINE B4 0 165 10 1 1687 646 148 102 0 chr4 144549454 144549562 -11080558 - B1_Mus1 SINE Alu -1 147 29 1 1687 227 51 77 0 chr4 144549568 144549607 -11080513 + (CAAAT)n Simple_repeat Simple_repeat 3 44 0 1 1687 993 120 0 3 chr4 144549913 144550263 -11079857 + (GGA)n Simple_repeat Simple_repeat 1 349 0 1 1687 207 271 43 0 chr4 144550311 144550381 -11079739 + CT-rich Low_complexity Low_complexity 3 75 0 1 1687 1179 277 88 1 chr4 144551238 144551669 -11078451 - L1M5 LINE L1 -356 5818 5350 1 1687 561 289 16 0 chr4 144551757 144551885 -11078235 - RSINE1 SINE B4 -35 130 1 1 1687 876 222 15 58 chr4 144551945 144552151 -11077969 + B3A SINE B2 2 198 0 1 1687 404 293 79 79 chr4 144552211 144552241 -11077879 - B4 SINE B4 -34 258 144 1 1687 979 148 0 0 chr4 144552241 144552383 -11077737 - B1_Mur4 SINE Alu 0 150 9 1 1687 404 293 79 79 chr4 144552383 144552400 -11077720 - B4 SINE B4 -34 143 70 1 1687 330 314 149 20 chr4 144552400 144552595 -11077525 - L1MD LINE L1 -2448 3698 3479 1 1687 673 354 0 0 chr4 144552640 144552798 -11077322 - RSINE1 SINE B4 -6 159 2 1 1687 271 183 42 0 chr4 144553111 144553182 -11076938 + GA-rich Low_complexity Low_complexity 2 75 0 1 1687 1034 58 0 7 chr4 144553189 144553328 -11076792 + (GAAA)n Simple_repeat Simple_repeat 4 141 0 1 1687 183 162 0 0 chr4 144553809 144553846 -11076274 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1687 710 291 24 15 chr4 144553926 144554132 -11075988 + MTD LTR MaLR 54 261 -158 1 1687 282 182 18 0 chr4 144554135 144554190 -11075930 - ERVL-E-int LTR ERVL -1221 4446 4391 1 1687 339 210 32 0 chr4 144554192 144554254 -11075866 + MTD LTR MaLR 276 339 -80 1 1687 325 306 14 0 chr4 144554339 144554435 -11075685 - PB1D10 SINE Alu -40 109 7 1 1687 507 245 131 41 chr4 144554446 144554667 -11075453 - MER97c DNA MER1_type? -404 686 446 1 1687 314 309 149 64 chr4 144554746 144554995 -11075125 - Lx8 LINE L1 -16 7457 7188 1 1687 482 245 176 55 chr4 144555137 144555336 -11074784 - MER97c DNA MER1_type? -750 340 118 1 1687 24 0 0 0 chr4 144555526 144555550 -11074570 + AT_rich Low_complexity Low_complexity 1 24 0 1 1687 363 44 0 0 chr4 144555575 144555620 -11074500 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1687 1553 48 5 0 chr4 144555734 144555920 -11074200 - B2_Mm1t SINE B2 -6 187 1 1 1687 214 182 33 83 chr4 144555926 144555986 -11074134 - B4A SINE B4 -226 66 10 1 1687 584 306 88 44 chr4 144556748 144557021 -11073099 - RMER15 LTR ERVL -18 557 273 1 1687 2165 107 62 0 chr4 144557051 144557359 -11072761 + ORR1A2 LTR MaLR 1 327 0 1 1687 552 327 13 0 chr4 144557422 144557575 -11072545 + RSINE1 SINE B4 4 158 -7 1 1687 387 248 61 17 chr4 144557621 144557736 -11072384 + MER2B DNA MER2_type 149 268 -68 1 1687 920 244 133 51 chr4 144557718 144558033 -11072087 - MTEa LTR MaLR -38 341 1 1 1687 4382 286 89 28 chr4 144558035 144559021 -11071099 - MTEa-int LTR MaLR -2 1578 500 1 1687 1182 194 133 29 chr4 144559021 144559366 -11070754 + ORR1C2 LTR MaLR 1 381 -3 1 1687 4382 286 89 28 chr4 144559366 144559754 -11070366 - MTEa-int LTR MaLR -1081 499 120 1 1687 1224 86 0 0 chr4 144559754 144559916 -11070204 + B2_Mm2 SINE B2 2 163 -32 1 1687 483 237 30 30 chr4 144559909 144560044 -11070076 - MTEa-int LTR MaLR -1445 135 1 1 1687 973 221 33 29 chr4 144560055 144560265 -11069855 - MTEa LTR MaLR -11 368 158 1 1687 531 0 0 0 chr4 144560265 144560324 -11069796 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1 1687 735 187 18 0 chr4 144560324 144560495 -11069625 + CT-rich Low_complexity Low_complexity 2 175 0 1 1687 710 237 37 0 chr4 144560540 144560675 -11069445 - MTEa LTR MaLR -218 161 22 1 1687 237 255 175 10 chr4 144561349 144561394 -11068726 - MLT2B4 LTR ERVL -71 485 424 1 1687 469 205 0 0 chr4 144561394 144561472 -11068648 + RSINE1 SINE B4 3 80 -85 1 1687 189 121 0 0 chr4 144561472 144561505 -11068615 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1687 262 260 91 30 chr4 144561815 144561914 -11068206 - PB1 SINE Alu -21 106 2 1 1687 314 123 18 0 chr4 144562446 144562503 -11067617 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1 1687 522 57 0 0 chr4 144563813 144563883 -11066237 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1687 220 257 99 63 chr4 144566754 144566864 -11063256 + MIR SINE MIR 30 145 -131 1 1687 275 85 21 0 chr4 144570394 144570441 -11059679 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1687 783 217 148 0 chr4 144571614 144571803 -11058317 - ID_B1 SINE B4 -7 217 1 1 1687 183 305 146 10 chr4 144571898 144571994 -11058126 - L2a LINE L2 -20 3406 3298 1 1687 260 294 65 11 chr4 144572082 144572175 -11057945 + MLT1A LTR MaLR 271 368 -6 1 1688 1161 38 0 0 chr4 144572742 144572875 -11057245 + B1_Mm SINE Alu 5 137 -10 1 1688 441 0 0 0 chr4 144572875 144572924 -11057196 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1688 365 241 62 36 chr4 144575108 144575220 -11054900 - B1F SINE Alu -1 148 34 1 1688 266 0 29 0 chr4 144576370 144576404 -11053716 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1688 264 273 33 33 chr4 144576881 144576972 -11053148 - L1M5 LINE L1 -388 5776 5686 1 1688 372 256 47 0 chr4 144577180 144577266 -11052854 + MER3 DNA MER1_type 50 139 -70 1 1688 360 269 7 156 chr4 144577356 144577497 -11052623 + ID_B1 SINE B4 105 224 0 1 1688 398 294 173 8 chr4 144577591 144577718 -11052402 - RSINE1 SINE B4 -13 152 5 1 1688 1567 239 142 2 chr4 144577813 144578279 -11051841 + MT2A LTR ERVL 1 531 -2 1 1688 348 24 0 0 chr4 144579906 144579947 -11050173 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1688 227 325 24 12 chr4 144579984 144580068 -11050052 + MIR SINE MIR 166 250 -12 1 1688 225 262 239 18 chr4 144581006 144581170 -11048950 + MIRb SINE MIR 58 264 -4 1 1688 652 238 28 7 chr4 144581220 144581364 -11048756 + B1F SINE Alu 2 148 -1 1 1688 823 148 0 0 chr4 144581375 144581510 -11048610 + B1_Mus2 SINE Alu 7 141 -6 1 1688 342 0 0 0 chr4 144581600 144581638 -11048482 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1688 269 151 0 19 chr4 144581905 144581959 -11048161 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1688 303 28 0 0 chr4 144584606 144584642 -11045478 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1688 270 0 0 0 chr4 144585243 144585273 -11044847 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1 1688 1106 96 0 14 chr4 144585355 144585503 -11044617 - B1_Mus1 SINE Alu -1 147 2 1 1688 782 267 69 0 chr4 144585640 144585842 -11044278 - ID_B1 SINE B4 -4 220 5 1 1688 189 0 0 0 chr4 144585959 144585980 -11044140 + (CAG)n Simple_repeat Simple_repeat 2 22 0 1 1688 717 77 0 0 chr4 144586022 144586126 -11043994 + L1_Mus2 LINE L1 6463 6566 0 1 1688 241 305 10 31 chr4 144586574 144586672 -11043448 + (CATA)n Simple_repeat Simple_repeat 4 99 0 1 1688 201 286 18 0 chr4 144586771 144586827 -11043293 + MIR SINE MIR 142 198 -64 1 1688 1083 70 16 1 chr4 144591395 144591546 -11038574 - B1_Mus2 SINE Alu 0 311 13 1 1688 183 23 0 137 chr4 144592454 144592505 -11037615 + A-rich Low_complexity Low_complexity 5 48 0 1 1688 244 228 13 0 chr4 144592549 144592628 -11037492 + A-rich Low_complexity Low_complexity 6 85 0 1 1688 394 273 26 65 chr4 144594694 144594847 -11035273 - MIRb SINE MIR -12 256 110 1 1688 358 290 233 29 chr4 144595704 144595910 -11034210 + HAL1 LINE L1 95 342 -2165 1 1688 1180 37 0 0 chr4 144596412 144596546 -11033574 + B1_Mm SINE Alu 5 138 -9 1 1688 405 0 0 0 chr4 144596546 144596591 -11033529 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1688 323 293 64 16 chr4 144596717 144596842 -11033278 + HAL1 LINE L1 2074 2204 -303 1 1688 345 24 0 0 chr4 144596894 144596936 -11033184 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2 1688 1519 6 0 11 chr4 144597102 144597284 -11032836 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1688 713 59 30 0 chr4 144597284 144597385 -11032735 + (TCCCC)n Simple_repeat Simple_repeat 4 107 0 2 1688 376 312 60 42 chr4 144597574 144597741 -11032379 + RMER15 LTR ERVL 406 575 0 2 1688 387 348 27 17 chr4 144597848 144597990 -11032130 + ID_B1 SINE B4 79 214 -10 2 1688 1013 180 5 41 chr4 144598042 144598239 -11031881 + B2_Mm2 SINE B2 2 191 -4 2 1688 1070 232 0 25 chr4 144598577 144598776 -11031344 + B3 SINE B2 10 203 -13 2 1688 183 80 0 0 chr4 144598776 144598801 -11031319 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 2 1688 891 123 14 0 chr4 144599089 144599227 -11030893 - URR1A DNA MER1_type -6 220 81 2 1688 432 181 234 8 chr4 144600202 144600330 -11029790 - Charlie1b DNA MER1_type -243 280 124 2 1688 297 340 54 68 chr4 144604177 144604398 -11025722 - MIRc SINE MIR -49 219 2 2 1688 223 249 34 99 chr4 144604654 144604774 -11025346 + MIRc SINE MIR 13 125 -143 2 1688 510 293 89 0 chr4 144605092 144605249 -11024871 - B3A SINE B2 -23 175 5 2 1688 467 245 108 9 chr4 144606337 144606448 -11023672 - ID_B1 SINE B4 -11 213 92 2 1688 890 214 39 44 chr4 144607124 144607329 -11022791 + ID_B1 SINE B4 21 224 0 2 1688 312 148 115 0 chr4 144608115 144608176 -11021944 + HAL1-3A_ME LINE L1 1945 2012 -846 2 1688 659 282 0 0 chr4 144608217 144608348 -11021772 - RSINE1 SINE B4 -23 142 12 2 1688 263 294 61 98 chr4 144608354 144608486 -11021634 - MamGypLTR3 LTR Gypsy -709 130 4 2 1688 358 297 65 31 chr4 144609490 144609726 -11020394 - B4A SINE B4 0 292 2 2 1688 403 353 0 22 chr4 144610764 144610900 -11019220 + B4A SINE B4 1 133 -159 2 1688 499 260 128 20 chr4 144610993 144611142 -11018978 + B4A SINE B4 128 292 0 2 1688 256 141 162 59 chr4 144613332 144613400 -11016720 - PB1D10 SINE Alu 0 117 43 2 1688 324 0 0 0 chr4 144614153 144614189 -11015931 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1688 225 0 0 0 chr4 144614648 144614673 -11015447 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1688 279 71 0 0 chr4 144615859 144615901 -11014219 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 2 1688 242 125 0 24 chr4 144615913 144615954 -11014166 + ID4 SINE ID 1 40 -43 2 1688 674 214 20 46 chr4 144616973 144617125 -11012995 + B1_Mur1 SINE Alu 2 149 0 2 1688 582 313 13 20 chr4 144617172 144617322 -11012798 - RSINE1 SINE B4 -14 151 3 2 1688 1062 184 40 5 chr4 144617662 144617864 -11012256 - B3 SINE B2 -5 211 3 2 1688 6451 115 34 8 chr4 144618991 144619989 -11010131 + Lx2B LINE L1 5974 6997 -3 2 1688 425 275 46 0 chr4 144620331 144620440 -11009680 + PB1D10 SINE Alu 2 115 -2 2 1688 465 295 0 8 chr4 144620477 144620600 -11009520 + PB1 SINE Alu 1 122 -5 2 1688 317 275 11 32 chr4 144620600 144620694 -11009426 - MLT1A0 LTR MaLR -226 139 48 2 1688 522 191 75 0 chr4 144621778 144621872 -11008248 + RSINE1 SINE B4 31 131 -34 2 1688 21 36 0 0 chr4 144621887 144621915 -11008205 + AT_rich Low_complexity Low_complexity 1 28 0 2 1688 317 234 31 0 chr4 144623133 144623197 -11006923 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 2 1688 657 256 142 54 chr4 144625908 144626168 -11003952 + B4A SINE B4 4 286 -6 2 1688 235 338 83 19 chr4 144627142 144627299 -11002821 + MIRm SINE MIR 5 171 -105 2 1688 342 67 0 0 chr4 144628470 144628515 -11001605 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1688 850 211 88 6 chr4 144629946 144630127 -10999993 - B3A SINE B2 -1 197 2 2 1688 406 241 8 94 chr4 144631861 144631989 -10998131 - PB1D10 SINE Alu 0 117 1 2 1688 863 253 12 43 chr4 144632143 144632399 -10997721 + Lx8 LINE L1 7218 7465 -8 2 1688 216 331 48 13 chr4 144632763 144632888 -10997232 + MIRm SINE MIR 19 157 -119 2 1688 453 19 0 0 chr4 144635910 144635964 -10994156 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1688 405 0 0 0 chr4 144635964 144636008 -10994112 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1688 212 86 29 0 chr4 144636641 144636676 -10993444 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1688 475 303 84 25 chr4 144636693 144636967 -10993153 - B4A SINE B4 -2 290 1 2 1688 747 216 7 21 chr4 144637166 144637308 -10992812 - B1_Mur3 SINE Alu -3 146 7 2 1688 332 268 42 74 chr4 144637323 144637490 -10992630 - L1M5 LINE L1 -435 5727 5566 2 1688 278 221 0 125 chr4 144637595 144637683 -10992437 - ID4_ SINE ID -2 81 5 2 1688 353 322 28 45 chr4 144637832 144638011 -10992109 - L1M5 LINE L1 -880 5266 5091 2 1688 256 260 40 40 chr4 144638653 144638729 -10991391 + Lx9 LINE L1 7150 7225 -419 2 1688 700 282 82 0 chr4 144638783 144638989 -10991131 + B4 SINE B4 64 286 -6 2 1688 744 72 0 62 chr4 144638992 144639332 -10990788 + (CA)n Simple_repeat Simple_repeat 1 318 0 2 1688 268 200 0 0 chr4 144639417 144639477 -10990643 + L1M LINE L1 5295 5354 -2528 2 1688 270 0 0 0 chr4 144639484 144639514 -10990606 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1688 363 278 28 0 chr4 144639717 144639789 -10990331 + B1F1 SINE Alu 7 80 -69 2 1688 205 325 47 24 chr4 144640129 144640214 -10989906 - MIRc SINE MIR -92 176 90 2 1688 307 235 44 108 chr4 144642793 144642943 -10987177 + Charlie8 DNA MER1_type 3 129 -2299 2 1688 210 315 52 52 chr4 144645186 144645283 -10984837 - BC1_Mm scRNA scRNA -50 102 6 2 1688 641 256 39 44 chr4 144645533 144645713 -10984407 + B3A SINE B2 3 181 -17 2 1688 514 200 0 10 chr4 144646562 144646658 -10983462 + PB1 SINE Alu 23 117 -10 2 1688 357 24 0 0 chr4 144647599 144647641 -10982479 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1688 295 306 41 0 chr4 144647688 144647786 -10982334 + PB1D7 SINE Alu 12 113 -7 2 1688 642 303 0 24 chr4 144647792 144647961 -10982159 + RSINE1 SINE B4 1 165 0 2 1688 240 346 12 49 chr4 144648641 144648723 -10981397 - RSINE1 SINE B4 0 165 87 2 1688 222 258 400 0 chr4 144648782 144648892 -10981228 - RSINE1 SINE B4 -9 156 3 2 1688 636 292 20 56 chr4 144648920 144649116 -10981004 - RMER30 DNA MER1_type -4 198 10 2 1688 322 324 90 38 chr4 144649118 144649330 -10980790 - L1MEc LINE L1 -3678 2641 2419 2 1688 258 275 62 0 chr4 144649348 144649428 -10980692 - PB1D10 SINE Alu -12 105 21 2 1688 662 304 151 35 chr4 144649636 144650036 -10980084 - L1MEc LINE L1 -4274 2126 1695 2 1688 1644 197 50 34 chr4 144650036 144650414 -10979706 + ORR1C2 LTR MaLR 1 384 0 2 1688 662 304 151 35 chr4 144650414 144650583 -10979537 - L1MEc LINE L1 -4706 1694 1491 2 1688 531 305 37 0 chr4 144650687 144650851 -10979269 - MER2 DNA MER2_type -83 262 93 2 1688 685 260 320 19 chr4 144651088 144651679 -10978441 - L1MEc LINE L1 -5596 804 36 2 1688 249 33 0 0 chr4 144651719 144651749 -10978371 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1688 315 259 95 36 chr4 144651805 144651889 -10978231 + RSINE1 SINE B4 52 140 -25 2 1688 745 228 7 14 chr4 144651973 144652120 -10978000 + B1_Mur1 SINE Alu 3 148 -1 2 1688 585 281 54 0 chr4 144652195 144652362 -10977758 + B3A SINE B2 5 180 -18 2 1688 387 247 37 0 chr4 144653360 144653441 -10976679 + RSINE1 SINE B4 82 165 0 2 1688 182 265 175 45 chr4 144653981 144654135 -10975985 + L2 LINE L2 2322 2495 -924 2 1688 1778 194 216 2 chr4 144654504 144654943 -10975177 + MT2A LTR ERVL 1 533 0 2 1688 286 282 81 9 chr4 144655386 144655497 -10974623 - PB1 SINE Alu -8 119 1 2 1688 371 209 335 5 chr4 144657512 144657709 -10972411 + Lx9 LINE L1 7383 7644 0 2 1688 820 206 19 72 chr4 144658036 144658245 -10971875 + B3A SINE B2 1 198 0 2 1688 903 267 103 52 chr4 144658276 144658761 -10971359 + Lx9 LINE L1 7126 7635 -9 2 1688 25 65 0 0 chr4 144659591 144659637 -10970483 + AT_rich Low_complexity Low_complexity 1 46 0 2 1688 503 228 84 108 chr4 144660203 144660370 -10969750 - RSINE1 SINE B4 0 165 3 2 1688 673 253 8 98 chr4 144660437 144660682 -10969438 + B3A SINE B2 1 216 0 2 1688 223 421 85 0 chr4 144660816 144660980 -10969140 - MIR SINE MIR -83 179 2 2 1688 266 302 103 0 chr4 144661332 144661448 -10968672 + MIRb SINE MIR 105 232 -36 2 1688 338 204 171 11 chr4 144662472 144662561 -10967559 + PB1D10 SINE Alu 14 117 0 2 1688 1052 92 6 0 chr4 144662895 144663058 -10967062 + (TCC)n Simple_repeat Simple_repeat 3 166 0 2 1688 792 314 50 12 chr4 144663128 144663370 -10966750 - B4A SINE B4 -2 290 40 2 1688 350 244 81 8 chr4 144663488 144663612 -10966508 + L1MB5 LINE L1 5102 5234 -912 2 1688 527 284 119 46 chr4 144663724 144664027 -10966093 + L1MB5 LINE L1 5842 6166 -8 2 1688 1141 193 25 10 chr4 144665253 144665457 -10964663 + B3 SINE B2 3 209 -7 2 1688 464 257 40 0 chr4 144665773 144665874 -10964246 + B3 SINE B2 106 210 -6 2 1688 300 243 191 62 chr4 144665937 144666099 -10964021 + B3A SINE B2 1 183 -15 2 1688 325 265 0 0 chr4 144666246 144666314 -10963806 + ID_B1 SINE B4 141 208 -16 2 1688 304 228 215 55 chr4 144667461 144667661 -10962459 + L1MB2 LINE L1 4598 4829 -1311 2 1688 887 252 43 26 chr4 144668205 144668500 -10961620 + L1MB2 LINE L1 5744 6055 -113 2 1688 816 157 263 6 chr4 144668500 144668679 -10961441 + URR1B DNA MER1_type 1 225 0 2 1688 791 278 47 24 chr4 144668679 144668695 -10961425 + L1MB2 LINE L1 6056 6071 -97 2 1688 4152 115 125 0 chr4 144668695 144669365 -10960755 + RMER6A LTR ERVK 1 754 -2 2 1688 791 278 47 24 chr4 144669365 144669383 -10960737 + L1MB2 LINE L1 6072 6090 -78 2 1688 2695 162 79 15 chr4 144669447 144669928 -10960192 + RLTR18B LTR ERVK 1 512 0 2 1688 219 78 59 0 chr4 144670015 144670066 -10960054 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2 1688 860 251 37 169 chr4 144670337 144670730 -10959390 + MTE2a LTR MaLR 1 328 -51 3 1688 620 59 12 0 chr4 144670730 144670815 -10959305 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 3 1688 860 251 37 169 chr4 144670815 144670858 -10959262 + MTE2a LTR MaLR 329 378 -1 3 1688 737 264 0 0 chr4 144671916 144672075 -10958045 + RSINE1 SINE B4 3 161 -4 3 1688 231 36 0 0 chr4 144672075 144672103 -10958017 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 1688 342 294 49 55 chr4 144672701 144672899 -10957221 - MIR SINE MIR -50 218 22 3 1688 326 345 0 8 chr4 144673994 144674114 -10956006 + RSINE1 SINE B4 3 121 -44 3 1688 186 71 0 0 chr4 144674136 144674164 -10955956 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1688 189 175 0 0 chr4 144674164 144674204 -10955916 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1688 415 216 10 10 chr4 144674313 144674416 -10955704 + B3 SINE B2 108 210 -6 3 1688 604 181 8 17 chr4 144677452 144677570 -10952550 - B1_Mus2 SINE Alu -1 146 30 3 1688 849 276 163 45 chr4 144678907 144679298 -10950822 - Lx9 LINE L1 -937 6707 6127 3 1688 524 232 35 0 chr4 144679340 144679482 -10950638 + Lx9 LINE L1 6698 6844 -800 3 1688 441 293 63 43 chr4 144679464 144679671 -10950449 + Lx9 LINE L1 7230 7440 -204 3 1688 240 294 76 0 chr4 144679804 144679896 -10950224 - PB1D10 SINE Alu -1 116 18 3 1688 1106 75 0 13 chr4 144679896 144680045 -10950075 + B1_Mus1 SINE Alu 2 148 0 3 1688 606 75 0 0 chr4 144680241 144680334 -10949786 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1688 834 290 37 56 chr4 144680457 144680953 -10949167 - L1M5 LINE L1 -3040 3106 2619 3 1688 672 169 113 0 chr4 144682457 144682581 -10947539 + B1_Mur2 SINE Alu 2 139 -10 3 1688 477 0 0 0 chr4 144682581 144682634 -10947486 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1688 906 183 123 20 chr4 144682647 144682842 -10947278 + B3 SINE B2 2 216 0 3 1688 232 349 0 12 chr4 144682929 144683013 -10947107 + ID4_ SINE ID 1 83 0 3 1688 414 257 89 0 chr4 144683554 144683655 -10946465 - ID_B1 SINE B4 -23 201 92 3 1688 334 242 132 83 chr4 144684065 144684209 -10945911 - B3A SINE B2 -1 197 47 3 1688 551 314 93 37 chr4 144685494 144685815 -10944305 + MER2 DNA MER2_type 1 339 -6 3 1688 394 255 64 0 chr4 144688332 144688426 -10941694 + B1F SINE Alu 44 143 -6 3 1688 306 0 0 0 chr4 144688445 144688479 -10941641 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1688 892 280 48 11 chr4 144688492 144688763 -10941357 - B4A SINE B4 -10 282 2 3 1688 914 245 76 20 chr4 144688778 144689028 -10941092 + B4 SINE B4 27 290 -2 3 1688 305 348 0 0 chr4 144689036 144689148 -10940972 + (CA)n Simple_repeat Simple_repeat 1 112 0 3 1688 801 31 0 0 chr4 144690181 144690277 -10939843 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 1688 387 0 0 0 chr4 144690564 144690607 -10939513 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1688 516 276 113 39 chr4 144690660 144690864 -10939256 - B4 SINE B4 -70 222 4 3 1688 966 170 160 0 chr4 144691413 144691607 -10938513 + URR1A DNA MER1_type 1 225 -1 3 1688 419 189 0 0 chr4 144692737 144692811 -10937309 - PB1D10 SINE Alu -43 74 1 3 1688 216 0 0 0 chr4 144693759 144693783 -10936337 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1688 360 307 25 50 chr4 144696471 144696591 -10933529 + PB1D10 SINE Alu 1 117 0 3 1688 449 203 159 24 chr4 144697544 144697670 -10932450 + B1F2 SINE Alu 2 144 -5 3 1688 604 260 20 14 chr4 144697862 144698010 -10932110 + B1F SINE Alu 1 149 0 3 1688 1173 43 0 0 chr4 144698053 144698191 -10931929 - B1_Mus2 SINE Alu -9 138 1 3 1688 779 208 140 0 chr4 144698709 144698887 -10931233 + B3 SINE B2 4 206 -10 3 1688 1256 113 0 6 chr4 144698890 144699068 -10931052 - B2_Mm2 SINE B2 -15 180 4 3 1688 740 232 79 28 chr4 144699265 144699548 -10930572 - Lx8 LINE L1 0 7473 7142 3 1688 243 188 0 0 chr4 144699800 144699848 -10930272 - B1_Mm SINE Alu -6 141 94 3 1688 266 276 0 17 chr4 144699830 144699889 -10930231 - B1_Mur4 SINE Alu -91 59 2 3 1688 580 198 33 0 chr4 144700461 144700582 -10929538 + B1_Mus2 SINE Alu 13 137 -10 3 1688 417 141 0 0 chr4 144701353 144701424 -10928696 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1688 250 273 0 15 chr4 144701529 144701596 -10928524 + GA-rich Low_complexity Low_complexity 2 67 0 3 1688 234 116 0 0 chr4 144702178 144702221 -10927899 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1688 405 81 0 0 chr4 144702216 144702278 -10927842 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1688 348 265 11 128 chr4 144702282 144702544 -10927576 + L1PB4 LINE L1 5723 5938 -362 3 1688 705 279 175 20 chr4 144702701 144703147 -10926973 - Tigger7 DNA MER2_type -1961 530 17 3 1688 786 117 156 0 chr4 144703154 144703282 -10926838 + B1_Mus1 SINE Alu 1 148 0 3 1688 305 290 0 0 chr4 144703329 144703398 -10926722 + ID4 SINE ID 3 71 -12 3 1689 314 295 81 31 chr4 144703553 144703714 -10926406 + MIRb SINE MIR 1 169 -99 3 1689 638 246 122 29 chr4 144703754 144703959 -10926161 + ID_B1 SINE B4 1 224 0 3 1689 568 267 54 7 chr4 144703962 144704109 -10926011 + RSINE1 SINE B4 2 155 -10 3 1689 213 308 27 55 chr4 144704286 144704396 -10925724 - MIR SINE MIR -123 139 33 3 1689 263 287 9 33 chr4 144705128 144705236 -10924884 + B1F SINE Alu 29 131 -18 3 1689 218 89 0 43 chr4 144705236 144705283 -10924837 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 3 1689 1071 269 45 95 chr4 144705820 144706219 -10923901 + MTE2a LTR MaLR 1 379 0 3 1689 621 0 0 0 chr4 144706648 144706717 -10923403 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1689 659 222 104 0 chr4 144706725 144706860 -10923260 + B3A SINE B2 2 150 -48 3 1689 288 0 0 0 chr4 144706861 144706893 -10923227 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1689 865 0 19 0 chr4 144706893 144706997 -10923123 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 1689 226 250 34 56 chr4 144707825 144707914 -10922206 + L1M5 LINE L1 5594 5680 -444 3 1689 393 319 8 8 chr4 144708193 144708310 -10921810 + PB1D10 SINE Alu 1 117 0 3 1689 226 200 0 0 chr4 144708311 144708351 -10921769 + (CGA)n Simple_repeat Simple_repeat 2 41 0 3 1689 1089 72 0 0 chr4 144708629 144708768 -10921352 + B1_Mus2 SINE Alu 1 139 -8 3 1689 315 0 0 0 chr4 144708768 144708803 -10921317 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1689 354 277 0 12 chr4 144710242 144710326 -10919794 + PB1D10 SINE Alu 5 87 -30 3 1689 316 260 0 64 chr4 144710362 144710440 -10919680 + ID SINE ID 8 80 -144 3 1689 207 162 0 0 chr4 144710440 144710477 -10919643 + (CATA)n Simple_repeat Simple_repeat 1 37 0 3 1689 26 50 0 0 chr4 144710479 144710519 -10919601 + AT_rich Low_complexity Low_complexity 1 40 0 3 1689 313 123 27 45 chr4 144710559 144710670 -10919450 + (TA)n Simple_repeat Simple_repeat 2 110 0 3 1689 309 259 30 24 chr4 144710689 144710855 -10919265 + (TA)n Simple_repeat Simple_repeat 2 168 0 3 1689 318 26 0 0 chr4 144710856 144710895 -10919225 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1689 260 282 0 14 chr4 144710896 144710968 -10919152 + MER5A DNA MER1_type 59 129 -60 3 1689 272 260 68 0 chr4 144710997 144711070 -10919050 + ID4_ SINE ID 6 83 0 3 1689 1028 120 47 42 chr4 144711589 144711780 -10918340 + B2_Mm2 SINE B2 4 195 0 3 1689 186 43 0 0 chr4 144711973 144711996 -10918124 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1689 185 146 0 20 chr4 144712080 144712129 -10917991 + G-rich Low_complexity Low_complexity 2 49 0 3 1689 404 187 77 0 chr4 144712158 144712249 -10917871 + PB1D9 SINE Alu 23 120 0 3 1689 368 245 31 0 chr4 144712737 144712835 -10917285 - PB1 SINE Alu -25 102 2 3 1689 1000 214 25 0 chr4 144712957 144713158 -10916962 - B3 SINE B2 0 216 11 3 1689 23 0 0 0 chr4 144713169 144713192 -10916928 + AT_rich Low_complexity Low_complexity 1 23 0 3 1689 343 308 87 20 chr4 144713224 144713297 -10916823 + MER20 DNA MER1_type 1 82 -137 3 1689 252 0 0 0 chr4 144713297 144713325 -10916795 + (ATG)n Simple_repeat Simple_repeat 3 30 0 3 1689 343 308 87 20 chr4 144713325 144713400 -10916720 + MER20 DNA MER1_type 83 159 -60 3 1689 729 220 76 30 chr4 144713482 144713679 -10916441 - B3 SINE B2 -4 212 7 3 1689 219 280 0 30 chr4 144715163 144715238 -10914882 + MIRm SINE MIR 76 151 -125 3 1689 213 121 0 0 chr4 144715915 144715948 -10914172 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1689 298 255 191 0 chr4 144716144 144716238 -10913882 + B1F SINE Alu 25 136 -13 3 1689 223 271 86 0 chr4 144718565 144718635 -10911485 + ID2 SINE ID 4 79 -4 3 1689 228 216 0 0 chr4 144718645 144718696 -10911424 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 3 1689 792 200 0 0 chr4 144718696 144718861 -10911259 + (TA)n Simple_repeat Simple_repeat 2 166 0 3 1689 325 232 31 21 chr4 144718861 144718958 -10911162 - B1F SINE Alu -50 99 2 3 1689 414 85 0 0 chr4 144719342 144719401 -10910719 + (GGGGA)n Simple_repeat Simple_repeat 2 60 0 3 1689 1382 50 6 0 chr4 144719401 144719580 -10910540 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 1689 290 266 37 25 chr4 144719606 144719687 -10910433 + ID4 SINE ID 1 82 -1 3 1689 771 226 38 0 chr4 144719786 144719945 -10910175 - B3A SINE B2 -26 172 8 3 1689 234 128 0 0 chr4 144720485 144720524 -10909596 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1689 579 294 14 0 chr4 144720526 144720672 -10909448 - B3A SINE B2 -41 157 10 3 1689 1129 228 21 49 chr4 144722843 144723129 -10906991 - B4A SINE B4 -14 278 1 3 1689 735 269 65 0 chr4 144724901 144725087 -10905033 + ID_B1 SINE B4 1 198 -26 4 1689 554 0 15 0 chr4 144726500 144726566 -10903554 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1689 342 315 30 8 chr4 144727184 144727315 -10902805 + MER21B LTR ERV1 503 636 -227 4 1689 514 299 53 20 chr4 144728045 144728195 -10901925 - RSINE1 SINE B4 -8 157 3 4 1689 359 256 16 0 chr4 144728778 144728903 -10901217 + L1M5 LINE L1 2805 2931 -3215 4 1689 756 160 24 0 chr4 144729021 144729146 -10900974 - B1_Mus1 SINE Alu 0 148 21 4 1689 998 213 15 0 chr4 144729158 144729355 -10900765 - B3 SINE B2 -6 210 11 4 1689 432 280 6 112 chr4 144729499 144729668 -10900452 - RSINE1 SINE B4 0 165 15 4 1689 691 230 159 14 chr4 144729760 144729980 -10900140 + Lx8 LINE L1 7220 7471 -2 4 1689 297 328 59 0 chr4 144730032 144730151 -10899969 + B1F SINE Alu 18 143 -6 4 1689 282 346 0 0 chr4 144730302 144730380 -10899740 + B4A SINE B4 2 79 -213 4 1689 1021 215 51 129 chr4 144730381 144730792 -10899328 + MTE2a LTR MaLR 1 379 0 4 1689 910 152 31 6 chr4 144730917 144731076 -10899044 + Lx7 LINE L1 7534 7696 0 4 1689 237 303 15 15 chr4 144732037 144732104 -10898016 - ID4_ SINE ID -15 68 2 4 1689 297 259 135 34 chr4 144732355 144732503 -10897617 - MIR3 SINE MIR -6 202 40 4 1689 519 252 9 0 chr4 144732682 144732797 -10897323 + RSINE1 SINE B4 5 120 -45 4 1689 288 272 60 17 chr4 144734299 144734415 -10895705 + MER94 DNA AcHobo 14 134 0 4 1689 369 0 0 0 chr4 144734906 144734947 -10895173 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1689 475 254 0 116 chr4 144735017 144735164 -10894956 - RSINE1 SINE B4 -33 132 3 4 1689 500 200 270 8 chr4 144736557 144736683 -10893437 - RSINE1 SINE B4 -4 161 3 4 1689 23 0 0 0 chr4 144737471 144737494 -10892626 + AT_rich Low_complexity Low_complexity 1 23 0 4 1689 228 309 70 41 chr4 144737591 144737779 -10892341 - MIR SINE MIR -53 215 14 4 1689 541 260 33 71 chr4 144739346 144739528 -10890592 - B3A SINE B2 -23 175 1 4 1689 535 180 10 0 chr4 144740951 144741051 -10889069 + ID_B1 SINE B4 114 214 -10 4 1689 871 202 137 0 chr4 144741070 144741253 -10888867 + B3 SINE B2 5 212 -4 4 1689 492 18 0 0 chr4 144741467 144741524 -10888596 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1689 366 302 0 0 chr4 144741805 144741901 -10888219 + PB1D10 SINE Alu 2 97 -20 4 1689 810 239 28 28 chr4 144742058 144742273 -10887847 + B3 SINE B2 2 216 0 4 1689 634 229 0 8 chr4 144742968 144743091 -10887029 + RSINE1 SINE B4 44 165 0 4 1689 207 0 0 0 chr4 144743709 144743732 -10886388 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1689 810 211 0 0 chr4 144743755 144743935 -10886185 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1689 279 0 0 0 chr4 144743976 144744007 -10886113 + (TATG)n Simple_repeat Simple_repeat 1 31 0 4 1689 630 0 0 0 chr4 144744007 144744077 -10886043 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 4 1689 893 154 0 0 chr4 144744131 144744267 -10885853 - B1_Mur3 SINE Alu -13 136 1 4 1689 702 250 23 28 chr4 144746755 144746932 -10883188 + B3A SINE B2 2 177 -21 4 1689 493 246 0 0 chr4 144747031 144747141 -10882979 + B1_Mur1 SINE Alu 28 137 -12 4 1689 242 179 0 18 chr4 144747150 144747207 -10882913 + GA-rich Low_complexity Low_complexity 2 57 0 4 1689 7576 141 46 16 chr4 144747540 144748880 -10881240 + Lx4A LINE L1 5647 7058 0 4 1689 1259 92 35 0 chr4 144748900 144749073 -10881047 + B2_Mm1t SINE B2 1 179 -14 4 1689 351 97 371 19 chr4 144749139 144749244 -10880876 + B2_Mm2 SINE B2 47 188 -7 4 1689 627 336 73 18 chr4 144749289 144749710 -10880410 + L1MB7 LINE L1 5385 5831 -353 4 1689 234 62 0 0 chr4 144749710 144749742 -10880378 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1689 627 334 71 19 chr4 144749742 144749783 -10880337 + L1MB7 LINE L1 5832 5870 -314 4 1689 378 83 0 0 chr4 144749786 144749844 -10880276 + B1_Mus2 SINE Alu 2 59 -90 4 1689 309 275 69 21 chr4 144749871 144750016 -10880104 + L1MB7 LINE L1 5873 6024 -160 4 1689 180 0 0 0 chr4 144750108 144750128 -10879992 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 4 1689 841 255 58 5 chr4 144750133 144750155 -10879965 - B3 SINE B2 0 216 185 4 1689 459 0 0 0 chr4 144750155 144750206 -10879914 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1689 841 255 58 5 chr4 144750206 144750388 -10879732 - B3 SINE B2 -32 184 1 4 1689 794 173 7 14 chr4 144750962 144751103 -10879017 + B1_Mus2 SINE Alu 1 140 -7 4 1689 21 0 0 0 chr4 144751118 144751139 -10878981 + AT_rich Low_complexity Low_complexity 1 21 0 4 1689 671 102 16 33 chr4 144751520 144751642 -10878478 + B1_Mur3 SINE Alu 30 149 0 4 1689 192 152 0 0 chr4 144751760 144751793 -10878327 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 4 1689 1494 72 0 5 chr4 144752281 144752477 -10877643 + B2_Mm2 SINE B2 1 195 0 4 1689 617 178 91 56 chr4 144754780 144754923 -10875197 - B1_Mur1 SINE Alu 0 149 2 4 1689 412 312 68 57 chr4 144755294 144755452 -10874668 - MER82 DNA MER2_type -134 519 349 4 1689 303 263 53 0 chr4 144755452 144755528 -10874592 + ID4_ SINE ID 1 80 -3 4 1689 412 312 68 57 chr4 144755528 144755722 -10874398 - MER82 DNA MER2_type -305 348 163 4 1689 266 286 76 51 chr4 144755813 144755931 -10874189 - MER82 DNA MER2_type -450 203 83 4 1689 261 0 0 0 chr4 144755968 144755997 -10874123 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1689 180 125 0 0 chr4 144756010 144756042 -10874078 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1689 753 159 0 90 chr4 144756042 144756187 -10873933 - B1_Mur3 SINE Alu -17 132 1 4 1689 504 0 0 0 chr4 144756198 144756254 -10873866 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1689 1497 190 62 86 chr4 144756313 144756512 -10873608 + MTC LTR MaLR 12 203 -218 4 1689 270 73 0 0 chr4 144756512 144756553 -10873567 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1689 894 151 0 7 chr4 144756562 144756709 -10873411 + B1_Mur4 SINE Alu 5 150 0 4 1689 1497 190 62 86 chr4 144756709 144756723 -10873397 + MTC LTR MaLR 204 206 -215 4 1689 1200 31 12 12 chr4 144756723 144756885 -10873235 + (GGGGA)n Simple_repeat Simple_repeat 4 165 0 4 1689 1497 190 62 86 chr4 144756885 144757080 -10873040 + MTC LTR MaLR 207 421 0 4 1689 543 213 16 32 chr4 144757080 144757204 -10872916 - B3A SINE B2 -76 122 1 4 1689 543 242 22 15 chr4 144759952 144760086 -10870034 + ID_B1 SINE B4 82 216 -8 4 1689 533 231 117 56 chr4 144760753 144760792 -10869328 + B3A SINE B2 1 35 -163 4 1689 608 245 28 0 chr4 144760792 144760935 -10869185 + B1_Mur2 SINE Alu 2 148 -1 4 1689 533 231 117 56 chr4 144760935 144761074 -10869046 + B3A SINE B2 36 190 -8 4 1689 620 209 52 7 chr4 144762435 144762570 -10867550 + B1_Mur2 SINE Alu 1 141 -8 4 1689 38 68 0 0 chr4 144762570 144762643 -10867477 + AT_rich Low_complexity Low_complexity 1 73 0 4 1689 39 38 0 0 chr4 144762687 144762740 -10867380 + AT_rich Low_complexity Low_complexity 1 53 0 4 1689 257 143 0 0 chr4 144763210 144763245 -10866875 - MurSatRep1 Unknown Unknown -1875 262 228 4 1689 249 33 0 0 chr4 144763578 144763608 -10866512 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1689 572 172 137 8 chr4 144763608 144763725 -10866395 - B1_Mur1 SINE Alu -13 136 5 4 1689 401 213 32 11 chr4 144763731 144763826 -10866294 - B3 SINE B2 -4 212 116 4 1689 301 312 10 40 chr4 144763891 144763991 -10866129 + ID_B1 SINE B4 82 178 -46 4 1689 736 200 21 7 chr4 144764103 144764244 -10865876 + B1_Mur3 SINE Alu 1 143 -6 4 1689 255 31 0 0 chr4 144764245 144764277 -10865843 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 4 1689 295 296 130 22 chr4 144765065 144765203 -10864917 + RSINE1 SINE B4 5 157 -8 4 1689 34 0 0 0 chr4 144765217 144765251 -10864869 + AT_rich Low_complexity Low_complexity 1 34 0 4 1689 242 265 0 150 chr4 144765440 144765462 -10864658 + ID4_ SINE ID 13 34 -49 4 1689 1167 61 175 6 chr4 144765462 144765610 -10864510 + B2_Mm2 SINE B2 1 177 -18 4 1689 387 0 0 0 chr4 144765610 144765653 -10864467 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 4 1689 1167 61 175 6 chr4 144765653 144765670 -10864450 + B2_Mm2 SINE B2 178 194 -1 4 1689 242 280 0 106 chr4 144765670 144765751 -10864369 + ID4_ SINE ID 26 104 -48 4 1689 825 298 26 29 chr4 144765811 144766084 -10864036 + B4A SINE B4 3 274 -18 4 1689 496 92 35 52 chr4 144766242 144766357 -10863763 - L1_Mus3 LINE L1 -5 6633 6521 4 1689 985 70 8 8 chr4 144766357 144766487 -10863633 + L1_Mus3 LINE L1 6398 6527 -111 4 1689 554 270 24 0 chr4 144766524 144766650 -10863470 + RSINE1 SINE B4 3 131 -34 4 1689 333 68 0 0 chr4 144766651 144766695 -10863425 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1689 371 238 67 0 chr4 144766707 144766812 -10863308 + Lx8 LINE L1 6908 7019 -454 4 1689 480 296 30 0 chr4 144766926 144767058 -10863062 + RSINE1 SINE B4 2 137 -28 4 1689 195 69 0 0 chr4 144767066 144767095 -10863025 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 4 1689 278 220 17 0 chr4 144767507 144767566 -10862554 - MIR SINE MIR -55 153 94 4 1689 257 200 77 0 chr4 144768415 144768480 -10861640 + 4.5SRNA scRNA scRNA 7 76 -18 4 1689 267 220 94 52 chr4 144768504 144768599 -10861521 + BC1_Mm scRNA scRNA 11 109 -43 4 1689 413 236 46 54 chr4 144768599 144768729 -10861391 + B1F1 SINE Alu 1 129 -20 4 1689 2381 110 3 12 chr4 144768791 144769121 -10860999 + ORR1A2 LTR MaLR 1 327 0 4 1689 719 166 0 167 chr4 144769522 144769696 -10860424 + B1_Mur1 SINE Alu 3 147 -2 4 1689 303 275 43 0 chr4 144769892 144769961 -10860159 + ID4_ SINE ID 3 74 -9 4 1689 23 33 0 0 chr4 144769974 144770004 -10860116 + AT_rich Low_complexity Low_complexity 1 30 0 4 1689 249 282 126 0 chr4 144770093 144770196 -10859924 - PB1D10 SINE Alu 0 117 2 4 1689 522 0 0 0 chr4 144770587 144770645 -10859475 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1689 367 239 0 0 chr4 144770645 144770716 -10859404 - ID4 SINE ID -11 72 2 4 1689 207 100 0 0 chr4 144770744 144770774 -10859346 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 4 1689 506 167 21 0 chr4 144770774 144770870 -10859250 - B1_Mur1 SINE Alu -1 148 51 4 1689 220 154 0 0 chr4 144771442 144771481 -10858639 - RSINE1 SINE B4 -110 55 17 5 1689 419 232 19 98 chr4 144771498 144771614 -10858506 - PB1 SINE Alu -1 119 13 5 1689 748 286 32 37 chr4 144771654 144771715 -10858405 + ID SINE ID 8 68 -156 5 1689 2805 147 117 15 chr4 144771715 144772246 -10857874 + RMER4B LTR ERVK 1 585 0 5 1689 748 286 32 37 chr4 144772246 144772402 -10857718 + ID_B1 SINE B4 69 224 0 5 1689 1719 16 0 0 chr4 144772421 144772609 -10857511 + B2_Mm1a SINE B2 2 189 -4 5 1689 353 307 10 0 chr4 144772621 144772722 -10857398 + ID_B1 SINE B4 108 209 -15 5 1689 204 67 0 0 chr4 144772722 144772752 -10857368 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 5 1689 641 207 0 0 chr4 144772754 144772875 -10857245 + RSINE1 SINE B4 3 123 -42 5 1689 201 286 14 41 chr4 144773044 144773117 -10857003 + MER5A DNA MER1_type 74 144 -45 5 1689 367 281 47 67 chr4 144773197 144773215 -10856905 + ID_B1 SINE B4 78 216 -8 5 1689 584 215 84 8 chr4 144773215 144773338 -10856782 + B1_Mur4 SINE Alu 10 143 -7 5 1689 219 69 0 0 chr4 144773338 144773367 -10856753 + (CAGAT)n Simple_repeat Simple_repeat 2 30 0 5 1689 362 293 69 40 chr4 144773537 144773711 -10856409 + ORR1E LTR MaLR 19 197 -162 5 1689 286 188 16 15 chr4 144773730 144773804 -10856316 + ORR1E LTR MaLR 285 359 -20 5 1689 396 0 0 0 chr4 144774690 144774734 -10855386 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1689 585 231 15 7 chr4 144775301 144775436 -10854684 - B1F SINE Alu -13 136 1 5 1689 192 234 0 21 chr4 144775517 144775565 -10854555 - MIRb SINE MIR 0 268 222 5 1689 252 59 0 0 chr4 144775705 144775739 -10854381 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1689 690 164 49 0 chr4 144775749 144775871 -10854249 + B3 SINE B2 3 130 -86 5 1689 22 0 0 0 chr4 144775902 144775924 -10854196 + AT_rich Low_complexity Low_complexity 1 22 0 5 1689 512 102 50 10 chr4 144775933 144776032 -10854088 + Lx9 LINE L1 7541 7643 -1 5 1689 1413 191 120 20 chr4 144776067 144776278 -10853842 + ORR1C2 LTR MaLR 9 234 -150 5 1689 207 0 0 0 chr4 144776278 144776301 -10853819 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 5 1689 1413 191 120 20 chr4 144776301 144776431 -10853689 + ORR1C2 LTR MaLR 235 384 0 5 1689 1032 200 50 10 chr4 144776441 144776643 -10853477 - B3 SINE B2 -3 213 4 5 1689 489 269 107 6 chr4 144776807 144776975 -10853145 + ID_B1 SINE B4 1 185 -39 5 1689 520 273 42 0 chr4 144776990 144777133 -10852987 + RSINE1 SINE B4 2 150 -15 5 1689 824 180 0 26 chr4 144777210 144777364 -10852756 - B1_Mur4 SINE Alu 0 150 1 5 1689 219 286 119 37 chr4 144777632 144777741 -10852379 + L2b LINE L2 3251 3368 -7 5 1689 201 182 0 0 chr4 144778018 144778051 -10852069 + T-rich Low_complexity Low_complexity 1 33 0 5 1689 1249 41 0 7 chr4 144778316 144778464 -10851656 + B1_Mm SINE Alu 1 147 0 5 1689 211 28 27 27 chr4 144778546 144778583 -10851537 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 5 1689 524 252 57 14 chr4 144778583 144778724 -10851396 - B1_Mus2 SINE Alu 0 147 1 5 1689 233 302 16 56 chr4 144778816 144778838 -10851282 - YREP_Mm Unknown Unknown -1481 331 315 5 1689 514 244 42 8 chr4 144778838 144778958 -10851162 + B1F1 SINE Alu 3 126 -23 5 1689 439 320 73 0 chr4 144778975 144779125 -10850995 + RSINE1 SINE B4 3 163 -2 5 1689 611 175 0 0 chr4 144779150 144779247 -10850873 - PB1D9 SINE Alu -5 115 19 5 1689 26 0 0 0 chr4 144779253 144779279 -10850841 + AT_rich Low_complexity Low_complexity 1 26 0 5 1689 563 206 31 166 chr4 144779830 144779993 -10850127 - B1_Mur1 SINE Alu -8 141 1 5 1689 583 112 29 48 chr4 144780021 144780124 -10849996 - URR1B DNA MER1_type 0 225 125 5 1689 514 225 15 111 chr4 144780184 144780319 -10849801 + RSINE1 SINE B4 44 165 0 5 1689 619 229 50 0 chr4 144780609 144780749 -10849371 + B1_Mur1 SINE Alu 1 147 -2 5 1689 391 271 112 53 chr4 144780960 144781002 -10849118 + MER20 DNA MER1_type 1 53 -166 5 1689 918 192 53 5 chr4 144781002 144781190 -10848930 - B3A SINE B2 0 198 2 5 1689 391 271 112 53 chr4 144781190 144781334 -10848786 + MER20 DNA MER1_type 54 198 -21 5 1689 1003 233 13 31 chr4 144781470 144781696 -10848424 - ID_B1 SINE B4 0 224 3 5 1689 23 33 0 0 chr4 144781854 144781884 -10848236 + AT_rich Low_complexity Low_complexity 1 30 0 5 1689 1175 184 14 19 chr4 144782014 144782225 -10847895 + B3 SINE B2 1 210 -6 5 1689 605 276 35 0 chr4 144782284 144782429 -10847691 + RSINE1 SINE B4 3 152 -13 5 1689 337 250 29 95 chr4 144782507 144782522 -10847598 + MT2B LTR ERVL 155 160 -441 5 1689 688 148 103 7 chr4 144782522 144782658 -10847462 + B1_Mur2 SINE Alu 1 149 0 5 1689 586 223 30 23 chr4 144783032 144783165 -10846955 + B1_Mur1 SINE Alu 9 142 -7 5 1689 400 279 80 9 chr4 144783568 144783680 -10846440 + RSINE1 SINE B4 3 122 -43 5 1689 198 337 10 61 chr4 144785050 144785148 -10844972 - MIR3 SINE MIR -33 175 83 5 1689 560 229 118 0 chr4 144785305 144785449 -10844671 + RSINE1 SINE B4 3 163 -2 5 1689 482 247 35 74 chr4 144785619 144785793 -10844327 + ID_B1 SINE B4 70 222 -2 5 1689 367 282 31 112 chr4 144785636 144785796 -10844324 + B1F1 SINE Alu 1 147 -2 5 1689 241 275 58 14 chr4 144785860 144785955 -10844165 + L2c LINE L2 2987 3080 -307 5 1689 226 311 54 0 chr4 144785960 144786034 -10844086 - MER33 DNA MER1_type 0 324 247 5 1689 1249 36 0 0 chr4 144786037 144786177 -10843943 + B1_Mm SINE Alu 1 140 -7 5 1689 323 23 23 0 chr4 144786178 144786222 -10843898 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 5 1689 375 190 84 65 chr4 144786414 144786521 -10843599 - PB1D10 SINE Alu -7 110 2 5 1689 387 316 36 0 chr4 144786867 144786991 -10843129 - B1F SINE Alu -20 130 1 5 1689 616 246 0 8 chr4 144787127 144787246 -10842874 + ID_B1 SINE B4 90 207 -17 5 1689 191 167 24 0 chr4 144787252 144787294 -10842826 + GA-rich Low_complexity Low_complexity 5 47 0 5 1689 387 230 140 73 chr4 144787360 144787474 -10842646 + MTEa LTR MaLR 51 178 -201 5 1689 1190 54 0 26 chr4 144787474 144787625 -10842495 + B1_Mus1 SINE Alu 1 147 -1 5 1689 420 20 0 0 chr4 144787625 144787674 -10842446 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1689 387 230 140 73 chr4 144787674 144787694 -10842426 + MTEa LTR MaLR 179 194 -185 5 1689 775 277 16 37 chr4 144787684 144787875 -10842245 + B3A SINE B2 9 195 -3 5 1689 237 263 81 22 chr4 144787861 144787997 -10842123 + ORR1B1-int LTR MaLR 616 759 -750 5 1689 987 72 0 0 chr4 144787895 144788020 -10842100 + B1_Mus1 SINE Alu 12 136 -12 5 1689 459 0 0 0 chr4 144788021 144788072 -10842048 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1689 378 0 0 0 chr4 144788126 144788168 -10841952 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 5 1689 354 247 11 66 chr4 144788648 144788739 -10841381 + B3 SINE B2 123 208 -8 5 1689 567 43 0 0 chr4 144788811 144788881 -10841239 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1689 372 104 0 0 chr4 144788884 144788951 -10841169 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 1689 666 185 16 16 chr4 144788951 144789072 -10841048 - B1_Mur4 SINE Alu -14 136 16 5 1689 376 308 57 0 chr4 144789108 144789267 -10840853 - MER33 DNA MER1_type 0 324 157 5 1689 459 0 0 0 chr4 144789760 144789811 -10840309 + (TTA)n Simple_repeat Simple_repeat 1 51 0 5 1689 621 74 73 9 chr4 144789811 144789920 -10840200 - L1_Mus4 LINE L1 -16 6620 6505 5 1689 338 292 132 31 chr4 144790456 144790615 -10839505 - MIR SINE MIR -17 245 71 5 1689 222 105 0 0 chr4 144790922 144790960 -10839160 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 5 1689 722 209 152 12 chr4 144790965 144791130 -10838990 - ID_B1 SINE B4 -35 189 2 5 1689 1027 218 282 60 chr4 144791235 144791308 -10838812 + RMER15 LTR ERVL 64 129 -446 5 1689 1181 199 144 56 chr4 144791308 144791648 -10838472 - ORR1D2 LTR MaLR 0 370 1 5 1689 1027 218 282 60 chr4 144791648 144791847 -10838273 + RMER15 LTR ERVL 130 409 -166 5 1689 3609 81 11 4 chr4 144791847 144792319 -10837801 - MT2C_Mm LTR ERVL 0 475 1 5 1689 1027 218 282 60 chr4 144792319 144792464 -10837656 + RMER15 LTR ERVL 410 575 0 5 1689 1269 173 5 5 chr4 144792728 144792949 -10837171 + URR1B DNA MER1_type 5 225 0 5 1689 419 308 80 98 chr4 144793087 144793361 -10836759 + B4 SINE B4 11 279 -13 5 1689 212 0 36 0 chr4 144793366 144793394 -10836726 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1689 960 53 53 0 chr4 144793727 144793896 -10836224 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1689 407 263 175 0 chr4 144794164 144794278 -10835842 + B1F SINE Alu 3 136 -13 5 1689 582 238 84 8 chr4 144794293 144794424 -10835696 + ID_B1 SINE B4 12 152 -72 5 1689 651 247 67 67 chr4 144794497 144794692 -10835428 - B3A SINE B2 -2 196 2 5 1689 474 260 179 0 chr4 144794714 144794837 -10835283 - RSINE1 SINE B4 -17 148 4 5 1689 753 43 0 0 chr4 144795068 144795161 -10834959 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 5 1689 721 212 70 88 chr4 144795395 144795623 -10834497 - ID_B1 SINE B4 0 224 1 5 1689 285 269 72 23 chr4 144795623 144795870 -10834250 - L1MB3 LINE L1 -75 6108 5815 5 1689 1150 225 9 9 chr4 144795924 144796139 -10833981 - B3 SINE B2 0 216 2 5 1689 336 302 23 11 chr4 144796151 144796238 -10833882 - B4A SINE B4 -204 88 1 5 1689 2852 45 6 0 chr4 144796329 144796681 -10833439 - MTA_Mm LTR MaLR 0 396 43 5 1689 2779 75 0 0 chr4 144796799 144797145 -10832975 - ORR1A1 LTR MaLR 0 346 1 5 1689 673 237 74 0 chr4 144797196 144797331 -10832789 - B1_Mur2 SINE Alu -1 148 4 5 1689 519 292 36 78 chr4 144797338 144797531 -10832589 - B3A SINE B2 -4 194 10 5 1689 249 298 51 68 chr4 144797542 144797776 -10832344 - L1MB3 LINE L1 -361 5822 5593 5 1689 414 285 22 0 chr4 144797811 144797948 -10832172 - L1MB3 LINE L1 -576 5607 5468 5 1689 388 194 55 9 chr4 144798081 144798190 -10831930 + Lx4B LINE L1 6945 7058 0 6 1689 1005 230 34 0 chr4 144798218 144798427 -10831693 + B3 SINE B2 1 216 0 6 1689 242 325 122 25 chr4 144798449 144798686 -10831434 - L2 LINE L2 -1756 1663 1404 6 1689 293 294 18 64 chr4 144798762 144798871 -10831249 + MLT1D LTR MaLR 108 211 -294 6 1689 750 229 14 0 chr4 144798917 144799057 -10831063 - ID_B1 SINE B4 -4 220 79 6 1689 225 222 94 16 chr4 144799004 144799068 -10831052 - MT2B LTR ERVL -290 311 243 6 1689 398 200 48 48 chr4 144799083 144799167 -10830953 - RSINE1 SINE B4 -57 108 25 6 1689 633 215 54 0 chr4 144799313 144799443 -10830677 - B3 SINE B2 0 216 80 6 1689 333 141 47 0 chr4 144799574 144799638 -10830482 - MTE2b LTR MaLR 0 379 313 6 1689 600 256 8 0 chr4 144799652 144799777 -10830343 - B3 SINE B2 -90 126 1 6 1689 229 222 82 14 chr4 144799937 144800010 -10830110 + B4 SINE B4 145 222 -70 6 1689 389 141 14 0 chr4 144800030 144800101 -10830019 + CT-rich Low_complexity Low_complexity 1 72 0 6 1689 683 220 15 0 chr4 144800209 144800341 -10829779 + B1_Mur1 SINE Alu 3 136 -13 6 1689 282 87 0 0 chr4 144800341 144800387 -10829733 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1689 1187 62 0 0 chr4 144800387 144800531 -10829589 - B1_Mm SINE Alu 0 147 4 6 1689 892 240 115 133 chr4 144800639 144800740 -10829380 + MTEb LTR MaLR 8 134 -245 6 1689 216 0 0 0 chr4 144800740 144800764 -10829356 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1689 892 240 115 133 chr4 144800764 144800776 -10829344 + MTEb LTR MaLR 135 146 -233 6 1689 1121 87 0 0 chr4 144800776 144800914 -10829206 - B1_Mus2 SINE Alu -8 139 2 6 1689 899 161 204 21 chr4 144800918 144801109 -10829011 - URR1A DNA MER1_type 0 226 1 6 1689 892 240 115 133 chr4 144801109 144801364 -10828756 + MTEb LTR MaLR 147 374 -5 6 1689 1138 88 0 0 chr4 144801479 144801627 -10828493 + B1_Mus1 SINE Alu 1 148 0 6 1689 215 163 0 20 chr4 144801628 144801678 -10828442 + A-rich Low_complexity Low_complexity 3 51 0 6 1689 283 96 19 19 chr4 144801689 144801742 -10828378 + (TTC)n Simple_repeat Simple_repeat 1 53 0 6 1689 758 263 86 0 chr4 144801743 144801941 -10828179 - ID_B1 SINE B4 -7 217 3 6 1689 28 29 0 0 chr4 144801952 144801987 -10828133 + AT_rich Low_complexity Low_complexity 1 35 0 6 1689 327 320 10 0 chr4 144802017 144802117 -10828003 - RSINE1 SINE B4 -63 102 2 6 1689 754 191 29 0 chr4 144802133 144802269 -10827851 - B1_Mur1 SINE Alu -8 141 2 6 1689 31 26 0 0 chr4 144802276 144802314 -10827806 + AT_rich Low_complexity Low_complexity 1 38 0 6 1689 635 248 41 0 chr4 144802314 144802435 -10827685 + B3 SINE B2 4 129 -87 6 1689 495 0 0 0 chr4 144802436 144802491 -10827629 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1689 865 120 217 76 chr4 144802550 144802637 -10827483 - URR1A DNA MER1_type 0 226 147 6 1689 704 154 136 16 chr4 144802637 144802762 -10827358 + B1_Mus2 SINE Alu 3 142 -5 6 1689 865 120 217 76 chr4 144802762 144802872 -10827248 - URR1A DNA MER1_type -80 146 1 6 1689 631 207 109 14 chr4 144803011 144803158 -10826962 + ID_B1 SINE B4 1 161 -63 6 1689 214 339 116 0 chr4 144803089 144803210 -10826910 + B1_Mus1 SINE Alu 12 146 -2 6 1689 276 267 83 73 chr4 144803194 144803225 -10826895 + MT2B2 LTR ERVL 131 162 -422 6 1689 344 250 154 46 chr4 144803225 144803355 -10826765 + PB1D10 SINE Alu 3 146 -1 6 1689 28 61 0 0 chr4 144803360 144803409 -10826711 + AT_rich Low_complexity Low_complexity 1 49 0 6 1689 701 207 45 32 chr4 144803440 144803595 -10826525 - RSINE1 SINE B4 -6 159 3 6 1689 852 268 98 15 chr4 144803629 144803894 -10826226 + B4A SINE B4 6 292 0 6 1689 346 104 0 0 chr4 144803911 144803959 -10826161 + HAL1-3A_ME LINE L1 1976 2023 -835 6 1689 297 159 138 31 chr4 144805132 144805197 -10824923 - ID4 SINE ID -6 77 6 6 1689 1193 256 22 14 chr4 144806270 144806548 -10823572 + B4 SINE B4 2 281 -11 6 1689 306 0 0 0 chr4 144806567 144806601 -10823519 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1689 441 0 0 0 chr4 144806601 144806649 -10823471 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1689 1165 222 0 0 chr4 144808322 144808529 -10821591 + B3 SINE B2 1 207 -9 6 1689 477 278 102 32 chr4 144808575 144808791 -10821329 + MIR SINE MIR 28 258 -4 6 1689 901 128 14 14 chr4 144808811 144808954 -10821166 + B1_Mur3 SINE Alu 6 148 -1 6 1689 458 355 0 13 chr4 144809352 144809506 -10820614 + Tigger5 DNA MER2_type 14 165 -2241 6 1689 440 260 28 19 chr4 144810036 144810142 -10819978 + MIR SINE MIR 8 114 -148 6 1689 224 261 0 0 chr4 144810143 144810189 -10819931 - B3A SINE B2 -123 75 30 6 1689 750 228 51 0 chr4 144810211 144810369 -10819751 + ID_B1 SINE B4 57 222 -2 6 1689 188 271 21 0 chr4 144812468 144812516 -10817604 + MIR SINE MIR 100 148 -60 6 1689 221 328 55 87 chr4 144812594 144812721 -10817399 - B1_Mur4 SINE Alu -17 133 11 6 1689 284 161 16 0 chr4 144812776 144812838 -10817282 + GA-rich Low_complexity Low_complexity 1 63 0 6 1689 619 209 31 8 chr4 144813994 144814127 -10815993 - B1F SINE Alu -8 141 1 6 1689 450 0 0 0 chr4 144814922 144814972 -10815148 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1689 189 0 0 0 chr4 144814972 144814992 -10815128 + (CG)n Simple_repeat Simple_repeat 2 22 0 6 1689 561 271 20 20 chr4 144815654 144815801 -10814319 + B1F1 SINE Alu 3 149 0 6 1689 357 271 56 100 chr4 144815805 144815826 -10814294 + B4 SINE B4 69 206 -86 6 1689 748 188 35 35 chr4 144815826 144815946 -10814174 + B1_Mur4 SINE Alu 8 122 -28 6 1689 351 0 0 0 chr4 144815946 144815985 -10814135 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1689 357 271 56 100 chr4 144815985 144816003 -10814117 + B4 SINE B4 207 221 -71 6 1689 394 270 100 0 chr4 144816083 144816183 -10813937 + PB1 SINE Alu 18 127 0 6 1689 986 132 0 0 chr4 144816246 144816390 -10813730 + B1_Mus1 SINE Alu 5 148 0 6 1689 297 0 0 0 chr4 144816398 144816431 -10813689 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 6 1689 1278 41 0 0 chr4 144816492 144816639 -10813481 + B1_Mus2 SINE Alu 1 147 0 6 1689 4450 33 8 0 chr4 144816726 144817244 -10812876 + L1Md_F3 LINE L1 6062 6583 -1 6 1689 261 0 0 0 chr4 144818094 144818123 -10811997 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1689 360 165 200 12 chr4 144818137 144818217 -10811903 - RSINE1 SINE B4 -68 97 3 6 1689 209 331 74 8 chr4 144818217 144818339 -10811781 + L2c LINE L2 2930 3059 -360 6 1689 223 327 140 49 chr4 144818674 144818838 -10811282 - L2b LINE L2 -222 3153 2975 6 1689 283 303 176 7 chr4 144819964 144820117 -10810003 - MIRb SINE MIR -63 205 27 6 1689 767 285 21 0 chr4 144820186 144820379 -10809741 + B3 SINE B2 1 197 -19 6 1689 24 0 0 0 chr4 144820379 144820403 -10809717 + AT_rich Low_complexity Low_complexity 1 24 0 6 1689 190 250 0 71 chr4 144820818 144820874 -10809246 + L2c LINE L2 3327 3378 -9 6 1689 323 308 0 27 chr4 144822159 144822222 -10807898 + polypyrimidine Low_complexity Low_complexity 46 107 0 6 1689 4994 44 0 0 chr4 144822222 144822808 -10807312 - L1Md_T LINE L1 0 6582 5997 6 1689 323 308 0 27 chr4 144822808 144822854 -10807266 + polypyrimidine Low_complexity Low_complexity 1 45 0 6 1689 752 207 0 46 chr4 144824130 144824282 -10805838 + B1_Mur4 SINE Alu 5 149 -1 6 1689 666 221 8 0 chr4 144824391 144824656 -10805464 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 6 1689 1932 183 40 56 chr4 144824928 144825305 -10804815 + ORR1D1 LTR MaLR 4 374 0 6 1689 592 278 20 65 chr4 144825541 144825564 -10804556 - B4 SINE B4 -2 290 268 6 1689 477 0 0 0 chr4 144825564 144825617 -10804503 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1689 592 278 20 65 chr4 144825617 144825793 -10804327 - B4 SINE B4 -25 267 100 6 1689 278 284 12 12 chr4 144827615 144827697 -10802423 + ID SINE ID 3 84 -140 6 1689 442 192 85 40 chr4 144827730 144827845 -10802275 + ID_B1 SINE B4 74 187 -37 6 1689 279 233 160 28 chr4 144827751 144827857 -10802263 + B1_Mur2 SINE Alu 7 126 -23 6 1689 921 211 31 16 chr4 144828431 144828624 -10801496 - B3 SINE B2 -10 206 11 6 1689 444 289 30 30 chr4 144828637 144828812 -10801308 - B3 SINE B2 -20 175 1 6 1689 822 208 0 7 chr4 144830307 144830457 -10799663 + B1_Mur1 SINE Alu 1 149 0 6 1689 540 0 0 0 chr4 144830460 144830520 -10799600 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1689 453 278 118 48 chr4 144831277 144831549 -10798571 + B4A SINE B4 2 292 0 6 1689 654 104 0 0 chr4 144831593 144831689 -10798431 + (GGGA)n Simple_repeat Simple_repeat 4 99 0 6 1689 258 325 175 0 chr4 144831775 144831889 -10798231 - MIRm SINE MIR -141 135 2 6 1689 260 0 0 54 chr4 144831889 144831926 -10798194 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 6 1689 1148 88 0 0 chr4 144831926 144832073 -10798047 - B1_Mus1 SINE Alu 0 148 2 6 1689 225 146 0 0 chr4 144832170 144832218 -10797902 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1689 647 295 57 44 chr4 144832218 144832298 -10797822 + CYRA11_Mm Unknown Y-chromosome 91 359 -258 6 1689 1101 182 67 5 chr4 144832298 144832508 -10797612 - URR1A DNA MER1_type -1 225 3 6 1689 404 257 44 9 chr4 144833393 144833507 -10796613 - ID_B1 SINE B4 0 224 107 6 1689 687 244 66 19 chr4 144833756 144833969 -10796151 + ID_B1 SINE B4 2 224 0 6 1690 271 340 72 48 chr4 144834673 144834880 -10795240 + MIRb SINE MIR 22 233 -35 6 1690 546 29 0 0 chr4 144838223 144838291 -10791829 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1690 693 161 67 87 chr4 144838898 144839048 -10791072 + B1_Mur3 SINE Alu 1 147 -2 6 1690 317 302 19 19 chr4 144839587 144839695 -10790425 - RMER15 LTR ERVL -42 533 426 6 1690 210 37 0 0 chr4 144840439 144840466 -10789654 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 6 1690 1371 89 0 30 chr4 144840494 144840692 -10789428 + B2_Mm2 SINE B2 3 194 -1 7 1690 752 247 79 115 chr4 144840720 144840999 -10789121 + B4A SINE B4 1 269 -23 7 1690 455 309 35 29 chr4 144841533 144841703 -10788417 + B4A SINE B4 16 186 -106 7 1690 221 172 0 33 chr4 144841758 144841818 -10788302 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 7 1690 410 185 11 100 chr4 144841860 144841950 -10788170 - B3A SINE B2 -116 82 1 7 1690 488 292 126 66 chr4 144842115 144842386 -10787734 + MER2 DNA MER2_type 9 295 -50 7 1690 335 338 79 50 chr4 144842959 144842977 -10787143 - B4A SINE B4 -45 247 231 7 1690 897 156 186 48 chr4 144842977 144843165 -10786955 - B3 SINE B2 0 216 3 7 1690 765 289 43 11 chr4 144843165 144843386 -10786734 - ID_B1 SINE B4 -62 230 1 7 1690 534 70 0 0 chr4 144843405 144843476 -10786644 + (TTCA)n Simple_repeat Simple_repeat 3 73 0 7 1690 247 224 20 0 chr4 144844136 144844185 -10785935 - tRNA-Ala-GCY_ tRNA tRNA -18 57 8 7 1690 583 305 58 12 chr4 144844360 144844705 -10785415 - L1M5 LINE L1 -578 5616 5256 7 1690 423 0 0 0 chr4 144844969 144845016 -10785104 + (CATA)n Simple_repeat Simple_repeat 1 47 0 7 1690 407 103 0 81 chr4 144845066 144845140 -10784980 + B1_Mm SINE Alu 80 147 0 7 1690 391 233 13 0 chr4 144845166 144845316 -10784804 + (TG)n Simple_repeat Simple_repeat 2 153 0 7 1690 878 151 14 0 chr4 144845349 144845488 -10784632 - B1_Mur3 SINE Alu -6 143 3 7 1690 235 49 0 47 chr4 144845492 144845535 -10784585 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1690 845 301 52 19 chr4 144846010 144846281 -10783839 + B4A SINE B4 4 283 -9 7 1690 343 300 0 91 chr4 144846349 144846459 -10783661 + RSINE1 SINE B4 4 103 -62 7 1690 522 0 0 0 chr4 144846470 144846528 -10783592 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1690 432 309 41 23 chr4 144847338 144847510 -10782610 + RMER15 LTR ERVL 390 564 -11 7 1690 204 324 12 86 chr4 144848604 144848685 -10781435 + MIRc SINE MIR 48 122 -146 7 1690 520 239 8 42 chr4 144848774 144848892 -10781228 + ID_B1 SINE B4 3 116 -108 7 1690 1427 224 96 9 chr4 144849090 144849414 -10780706 + MTEa LTR MaLR 28 379 0 7 1690 513 0 0 0 chr4 144849589 144849646 -10780474 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 7 1690 1196 36 0 0 chr4 144849648 144849788 -10780332 - B1_Mus2 SINE Alu -6 141 2 7 1690 1898 166 109 14 chr4 144850146 144850494 -10779626 + ORR1C2 LTR MaLR 2 382 -2 7 1690 249 108 0 0 chr4 144850521 144850558 -10779562 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1690 264 295 26 0 chr4 144851104 144851182 -10778938 + MIR SINE MIR 6 85 -177 7 1690 638 315 30 52 chr4 144851863 144852131 -10777989 + B4A SINE B4 2 263 -29 7 1690 513 0 0 0 chr4 144852157 144852214 -10777906 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1690 3449 27 22 0 chr4 144852295 144852697 -10777423 + IAPLTR2a LTR ERVK 1 411 0 7 1690 245 312 0 0 chr4 144852801 144852865 -10777255 + PB1 SINE Alu 62 125 -2 7 1690 419 274 42 0 chr4 144852951 144853046 -10777074 - RSINE1 SINE B4 -61 104 6 7 1690 2685 142 5 5 chr4 144853194 144853606 -10776514 + MTC LTR MaLR 10 421 0 7 1690 760 278 82 39 chr4 144853606 144853857 -10776263 + B4A SINE B4 28 289 -3 7 1690 412 254 120 23 chr4 144853865 144853998 -10776122 - MTEa LTR MaLR -8 371 226 7 1690 207 263 40 122 chr4 144854897 144855062 -10775058 + L2a LINE L2 2958 3120 -306 7 1690 342 162 0 139 chr4 144855163 144855242 -10774878 - PB1D9 SINE Alu -10 110 43 7 1690 226 341 22 33 chr4 144855798 144855889 -10774231 - MIRb SINE MIR -89 179 90 7 1690 194 297 14 72 chr4 144856011 144856080 -10774040 + MIRm SINE MIR 156 220 -56 7 1690 330 232 67 34 chr4 144856120 144856209 -10773911 + MLT1A1 LTR MaLR 308 399 -9 7 1690 451 319 57 0 chr4 144857410 144857551 -10772569 + B1F SINE Alu 1 149 0 7 1690 222 217 22 0 chr4 144858033 144858079 -10772041 + ID4_ SINE ID 34 80 -3 7 1690 966 80 232 0 chr4 144859477 144859628 -10770492 + B2_Mm2 SINE B2 1 186 -9 7 1690 383 284 39 30 chr4 144860516 144860641 -10769479 + B1F SINE Alu 11 141 -8 7 1690 462 236 114 95 chr4 144860554 144860765 -10769355 + B4 SINE B4 9 223 -69 7 1690 1016 40 8 0 chr4 144860641 144860767 -10769353 + B1_Mus2 SINE Alu 21 147 0 7 1690 184 100 24 24 chr4 144860767 144860808 -10769312 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 7 1690 349 231 108 100 chr4 144860861 144860892 -10769228 + B1F SINE Alu 18 89 -60 7 1690 489 158 0 0 chr4 144860892 144860968 -10769152 + ID_B1 SINE B4 136 211 -13 7 1690 349 231 108 100 chr4 144860968 144860991 -10769129 + B1F SINE Alu 90 148 -1 7 1690 761 303 58 4 chr4 144861025 144861119 -10769001 + B4A SINE B4 3 100 -192 7 1690 528 16 0 0 chr4 144861119 144861180 -10768940 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1690 761 303 58 4 chr4 144861180 144861360 -10768760 + B4A SINE B4 101 291 -1 7 1690 762 123 0 0 chr4 144861362 144861492 -10768628 + (CA)n Simple_repeat Simple_repeat 1 130 0 7 1690 27 0 0 0 chr4 144861494 144861521 -10768599 + AT_rich Low_complexity Low_complexity 1 27 0 7 1690 331 290 0 0 chr4 144861541 144861610 -10768510 + ID4 SINE ID 14 82 -1 7 1690 889 298 29 81 chr4 144861674 144862094 -10768026 + BGLII_B LTR ERVK 17 414 -27 7 1690 516 191 0 0 chr4 144862123 144862207 -10767913 + RSINE1 SINE B4 71 154 -11 7 1690 765 224 8 0 chr4 144862231 144862365 -10767755 + RSINE1 SINE B4 10 144 -21 7 1690 186 118 0 0 chr4 144862384 144862418 -10767702 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1690 217 109 21 21 chr4 144863263 144863310 -10766810 + G-rich Low_complexity Low_complexity 3 49 0 7 1690 675 155 26 0 chr4 144863445 144863561 -10766559 - URR1B DNA MER1_type 0 225 107 7 1690 21 0 0 0 chr4 144864524 144864545 -10765575 + AT_rich Low_complexity Low_complexity 1 21 0 7 1690 647 254 0 29 chr4 144864560 144864698 -10765422 - B1_Mur1 SINE Alu -2 147 14 7 1690 771 241 53 24 chr4 144864715 144864923 -10765197 - ID_B1 SINE B4 -9 215 2 7 1690 299 318 0 98 chr4 144865007 144865129 -10764991 - MIRb SINE MIR -80 188 79 7 1690 219 36 0 0 chr4 144865289 144865317 -10764803 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1690 1366 105 11 0 chr4 144865358 144865549 -10764571 - B2_Mm1t SINE B2 0 193 1 7 1690 747 179 87 130 chr4 144865698 144865929 -10764191 + ID_B1 SINE B4 2 222 -2 7 1690 1175 223 5 5 chr4 144865936 144866152 -10763968 + B3 SINE B2 1 216 0 7 1690 189 74 0 0 chr4 144866319 144866346 -10763774 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 7 1690 1279 120 16 0 chr4 144867210 144867393 -10762727 + B2_Mm2 SINE B2 1 186 -9 7 1690 1052 248 0 32 chr4 144868473 144868690 -10761430 - B3 SINE B2 -5 211 2 7 1690 212 348 29 0 chr4 144869277 144869346 -10760774 + ID4 SINE ID 2 72 -11 7 1690 439 260 124 25 chr4 144869427 144869628 -10760492 + L1MC3 LINE L1 7308 7528 -257 7 1690 999 173 88 10 chr4 144869707 144869900 -10760220 + B3 SINE B2 1 208 -8 7 1690 413 260 80 0 chr4 144870045 144870145 -10759975 - ID_B1 SINE B4 -37 187 80 7 1690 475 167 109 26 chr4 144870142 144870278 -10759842 - PB1D9 SINE Alu -9 140 7 7 1690 291 294 70 89 chr4 144870278 144870299 -10759821 - ID_B1 SINE B4 -9 215 62 7 1690 212 233 0 0 chr4 144870653 144870676 -10759444 + A-rich Low_complexity Low_complexity 1 23 0 7 1690 802 182 0 45 chr4 144870676 144870831 -10759289 + B1_Mus1 SINE Alu 1 148 0 7 1690 212 233 0 0 chr4 144870831 144870867 -10759253 + A-rich Low_complexity Low_complexity 24 59 0 7 1690 451 193 23 0 chr4 144871393 144871481 -10758639 + PB1D9 SINE Alu 30 119 -1 7 1690 445 198 12 0 chr4 144871555 144871636 -10758484 + ID_B1 SINE B4 143 224 0 7 1690 771 220 43 0 chr4 144872212 144872353 -10757767 + B1_Mur3 SINE Alu 3 149 0 7 1690 863 168 0 6 chr4 144872353 144872521 -10757599 + GA-rich Low_complexity Low_complexity 3 169 0 7 1690 684 77 0 44 chr4 144872493 144872629 -10757491 + (GAGAA)n Simple_repeat Simple_repeat 1 130 0 7 1690 291 247 0 33 chr4 144872705 144872797 -10757323 + L1MC4 LINE L1 7809 7897 -145 7 1690 715 245 25 98 chr4 144873095 144873299 -10756821 + ID_B1 SINE B4 3 191 -33 7 1690 289 183 212 35 chr4 144873342 144873427 -10756693 + MER20 DNA MER1_type 49 148 -71 7 1690 270 335 0 0 chr4 144874023 144874193 -10755927 + (CAGCC)n Simple_repeat Simple_repeat 3 172 0 7 1690 285 118 0 0 chr4 144874607 144874658 -10755462 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1690 229 82 20 20 chr4 144874911 144874961 -10755159 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 7 1690 719 152 0 17 chr4 144875654 144875774 -10754346 + B2_Mm2 SINE B2 59 176 -19 7 1690 496 216 153 0 chr4 144875787 144875898 -10754222 + B1F2 SINE Alu 2 129 -20 7 1690 210 26 50 25 chr4 144875907 144875947 -10754173 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1690 559 232 49 49 chr4 144876084 144876247 -10753873 + RSINE1 SINE B4 3 165 0 7 1690 764 242 76 19 chr4 144876586 144876797 -10753323 - ID_B1 SINE B4 0 224 2 7 1690 188 303 61 0 chr4 144876971 144877037 -10753083 - MIRb SINE MIR -89 179 110 7 1690 943 176 0 0 chr4 144877094 144877236 -10752884 - B1_Mur4 SINE Alu 0 150 9 7 1690 397 219 0 0 chr4 144877247 144877320 -10752800 - ID_B1 SINE B4 -5 219 147 7 1690 410 141 2 15 chr4 144877325 144877397 -10752723 - B1_Mur1 SINE Alu -11 138 43 8 1690 307 205 0 146 chr4 144877397 144877428 -10752692 - ID_B1 SINE B4 -11 213 126 8 1690 427 320 54 7 chr4 144877511 144877659 -10752461 - ID_B1 SINE B4 -69 155 1 8 1690 5876 127 41 41 chr4 144878624 144879647 -10750473 + RLTR13D5 LTR ERVK 1 1023 0 8 1690 506 231 35 88 chr4 144879692 144879863 -10750257 + RSINE1 SINE B4 4 165 0 8 1690 230 256 44 44 chr4 144880809 144880899 -10749221 + MTE2b LTR MaLR 288 377 -2 8 1690 222 116 0 0 chr4 144880972 144881015 -10749105 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 8 1690 778 153 16 0 chr4 144881038 144881162 -10748958 - B1_Mur2 SINE Alu -18 131 6 8 1690 207 88 0 0 chr4 144881225 144881259 -10748861 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 8 1690 637 183 0 40 chr4 144881287 144881412 -10748708 - MTD LTR MaLR -299 120 1 8 1690 212 257 14 0 chr4 144881482 144881552 -10748568 + A-rich Low_complexity Low_complexity 5 75 0 8 1690 976 244 47 5 chr4 144881750 144881964 -10748156 + B4 SINE B4 48 270 -22 8 1690 207 0 0 0 chr4 144881977 144882000 -10748120 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1690 513 0 0 0 chr4 144882000 144882056 -10748064 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1690 326 70 35 0 chr4 144883322 144883379 -10746741 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 8 1690 267 193 0 0 chr4 144883459 144883542 -10746578 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 1690 455 224 0 6 chr4 144883558 144883738 -10746382 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1690 913 140 3 16 chr4 144883757 144884121 -10745999 + (CA)n Simple_repeat Simple_repeat 1 359 0 8 1690 205 409 27 0 chr4 144884454 144884564 -10745556 + MIRc SINE MIR 81 193 -75 8 1690 700 176 63 8 chr4 144884757 144884883 -10745237 + B1_Mur1 SINE Alu 12 144 -5 8 1690 822 174 15 0 chr4 144884947 144885079 -10745041 + B3 SINE B2 83 216 0 8 1690 564 196 17 26 chr4 144885098 144885213 -10744907 + PB1D10 SINE Alu 3 116 -1 8 1690 219 320 40 0 chr4 144885242 144885317 -10744803 + B4 SINE B4 4 81 -211 8 1690 570 256 8 0 chr4 144885357 144885486 -10744634 + B1F SINE Alu 15 144 -5 8 1690 331 287 61 34 chr4 144885486 144885634 -10744486 - MER33 DNA MER1_type -124 200 49 8 1690 905 298 52 4 chr4 144887138 144887387 -10742733 + B4A SINE B4 1 261 -31 8 1690 207 88 0 0 chr4 144887394 144887428 -10742692 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1690 310 275 116 50 chr4 144887451 144887650 -10742470 + L1MC1 LINE L1 5842 6053 -280 8 1690 350 207 34 22 chr4 144887795 144887883 -10742237 + B4 SINE B4 8 96 -196 8 1690 619 259 7 28 chr4 144887883 144888026 -10742094 + ID_B1 SINE B4 1 140 -84 8 1690 347 285 129 75 chr4 144888026 144888069 -10742051 + B3A SINE B2 1 196 -2 8 1690 362 329 107 64 chr4 144889397 144889631 -10740489 + MLT1K LTR MaLR 130 373 -222 8 1690 181 291 128 45 chr4 144889999 144890132 -10739988 + L3 LINE CR1 4335 4478 -11 8 1690 360 0 0 0 chr4 144890680 144890720 -10739400 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1690 198 0 0 0 chr4 144890776 144890798 -10739322 + (TGGG)n Simple_repeat Simple_repeat 2 23 0 8 1690 552 204 48 70 chr4 144891206 144891353 -10738767 + ID_B1 SINE B4 71 210 -14 8 1690 198 0 0 0 chr4 144891409 144891431 -10738689 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 8 1690 918 94 78 0 chr4 144891432 144891560 -10738560 - B1_Mur4 SINE Alu -12 138 1 8 1690 608 77 0 11 chr4 144891576 144891668 -10738452 + (TG)n Simple_repeat Simple_repeat 2 92 0 8 1690 809 171 0 8 chr4 144891675 144891805 -10738315 - B3A SINE B2 -69 129 1 8 1690 697 225 45 2 chr4 144892566 144892726 -10737394 + B3 SINE B2 35 197 -19 8 1690 587 167 9 61 chr4 144893656 144893771 -10736349 + PB1D9 SINE Alu 12 120 0 8 1690 1023 193 62 14 chr4 144893954 144894164 -10735956 - ID_B1 SINE B4 -2 222 3 8 1690 2901 201 212 24 chr4 144894486 144895292 -10734828 + RMER17B LTR ERVK 1 958 0 8 1690 392 180 0 8 chr4 144895297 144895367 -10734753 + MTE2b LTR MaLR 1 66 -313 8 1690 701 277 76 95 chr4 144895376 144895639 -10734481 - MTD LTR MaLR -146 273 1 8 1690 216 174 43 0 chr4 144895642 144895688 -10734432 + B1F SINE Alu 80 127 -22 8 1690 241 154 26 0 chr4 144895785 144895824 -10734296 + ID_B1 SINE B4 159 198 -26 8 1690 241 154 26 0 chr4 144895856 144895895 -10734225 + ID_B1 SINE B4 159 198 -26 8 1690 273 172 52 0 chr4 144896068 144896126 -10733994 + ID4_ SINE ID 1 61 -22 8 1690 974 107 7 0 chr4 144896197 144896347 -10733773 + (TC)n Simple_repeat Simple_repeat 2 152 0 8 1690 366 326 50 7 chr4 144896748 144896887 -10733233 - MIR3 SINE MIR -55 153 9 8 1690 387 266 174 0 chr4 144897105 144897214 -10732906 + ID_B1 SINE B4 89 216 -8 8 1690 234 0 0 0 chr4 144897229 144897255 -10732865 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1690 261 295 124 0 chr4 144897266 144897371 -10732749 + ID_B1 SINE B4 102 219 -5 8 1690 428 145 58 0 chr4 144897395 144897464 -10732656 + ID4_ SINE ID 2 74 -9 8 1690 705 24 0 0 chr4 144897468 144897551 -10732569 + (CCAA)n Simple_repeat Simple_repeat 2 84 0 8 1690 333 238 40 15 chr4 144897653 144897752 -10732368 - PB1D10 SINE Alu -1 119 18 8 1690 368 264 93 19 chr4 144898243 144898351 -10731769 - PB1D10 SINE Alu -1 116 1 8 1690 1074 216 14 0 chr4 144898390 144898598 -10731522 - B3 SINE B2 -5 211 1 8 1690 232 293 0 79 chr4 144898811 144898874 -10731246 - B3 SINE B2 -30 186 129 8 1690 402 250 0 35 chr4 144898819 144898906 -10731214 - RSINE1 SINE B4 0 165 82 8 1690 370 275 0 24 chr4 144899015 144899097 -10731023 - RSINE1 SINE B4 -84 81 2 8 1690 226 267 336 20 chr4 144899163 144899312 -10730808 - MLT1E2 LTR MaLR -325 302 107 8 1690 585 252 88 34 chr4 144899323 144899471 -10730649 + RSINE1 SINE B4 6 161 -4 8 1690 400 200 98 20 chr4 144899506 144899608 -10730512 + ID_B1 SINE B4 83 192 -32 8 1690 907 201 196 0 chr4 144899944 144900123 -10729997 + B3 SINE B2 3 216 0 8 1690 459 0 0 0 chr4 144901715 144901766 -10728354 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1690 659 262 17 91 chr4 144901836 144902012 -10728108 - RSINE1 SINE B4 0 165 3 8 1690 232 254 33 17 chr4 144902021 144902081 -10728039 - B1F SINE Alu -79 70 10 8 1690 542 225 133 0 chr4 144902141 144902261 -10727859 - B1_Mur2 SINE Alu 0 149 14 8 1690 263 254 140 35 chr4 144902451 144902594 -10727526 + L1M5 LINE L1 5390 5547 -615 8 1690 331 308 35 131 chr4 144902701 144902741 -10727379 + B4 SINE B4 65 181 -111 8 1690 823 194 14 0 chr4 144902741 144902880 -10727240 + B1_Mur1 SINE Alu 8 148 -1 8 1690 331 308 35 131 chr4 144902880 144902899 -10727221 + B4 SINE B4 182 243 -49 8 1690 576 263 57 21 chr4 144902968 144903108 -10727012 + ID_B1 SINE B4 78 222 -2 8 1690 996 234 28 5 chr4 144903118 144903333 -10726787 + ID_B1 SINE B4 5 224 0 8 1690 883 164 0 0 chr4 144903352 144903486 -10726634 + B1_Mur4 SINE Alu 11 144 -6 8 1690 24 32 0 0 chr4 144903486 144903517 -10726603 + AT_rich Low_complexity Low_complexity 1 31 0 8 1690 725 214 8 0 chr4 144903737 144903868 -10726252 + RSINE1 SINE B4 4 135 -30 8 1690 393 277 18 13 chr4 144905547 144905948 -10724172 + (TGGA)n Simple_repeat Simple_repeat 1 403 0 8 1690 3441 30 2 8 chr4 144907244 144907642 -10722478 + MTA_Mm LTR MaLR 1 396 0 8 1690 316 263 123 43 chr4 144907921 144908084 -10722036 - B4 SINE B4 -64 228 53 8 1690 258 224 103 0 chr4 144908474 144908532 -10721588 + RMER10A LTR ERVL 318 381 -61 8 1690 525 104 0 0 chr4 144909731 144909808 -10720312 + (TTTCC)n Simple_repeat Simple_repeat 4 80 0 8 1690 726 226 142 21 chr4 144909808 144909998 -10720122 - ID_B1 SINE B4 0 224 12 8 1690 411 219 0 0 chr4 144910347 144910420 -10719700 - ID_B1 SINE B4 0 224 152 8 1690 212 311 110 11 chr4 144910428 144910519 -10719601 - MIRb SINE MIR -121 147 48 8 1690 968 105 21 7 chr4 144911174 144911318 -10718802 + B1_Mus1 SINE Alu 1 146 -2 8 1690 203 208 0 19 chr4 144911319 144911373 -10718747 + (TAA)n Simple_repeat Simple_repeat 2 54 0 8 1690 579 252 8 34 chr4 144911374 144911493 -10718627 - ID_B1 SINE B4 -28 196 81 8 1690 183 308 39 0 chr4 144911911 144911989 -10718131 + MIR3 SINE MIR 97 177 -31 8 1690 396 308 68 20 chr4 144912004 144912150 -10717970 + RSINE1 SINE B4 3 155 -10 8 1690 251 354 13 0 chr4 144912586 144912665 -10717455 + ID4_ SINE ID 2 81 -2 8 1690 239 250 0 0 chr4 144912678 144912726 -10717394 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1690 186 43 0 0 chr4 144912726 144912749 -10717371 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1690 693 0 0 0 chr4 144912946 144913023 -10717097 + (TC)n Simple_repeat Simple_repeat 1 77 0 8 1690 219 271 17 0 chr4 144913444 144913503 -10716617 + PB1D10 SINE Alu 23 82 -35 8 1690 1295 164 67 53 chr4 144913617 144914012 -10716108 - RMER6B LTR ERVK -10 451 1 8 1690 6531 112 91 21 chr4 144914030 144915069 -10715051 + Lx4A LINE L1 5944 7054 -4 8 1690 6234 112 50 4 chr4 144915101 144916050 -10714070 - MYSERV6-int LTR ERVK 0 8959 7968 8 1690 2394 65 0 124 chr4 144916076 144916209 -10713911 - L1_Mm LINE L1 -212 5671 5574 8 1690 1291 27 0 0 chr4 144916209 144916355 -10713765 - B1_Mm SINE Alu 0 147 2 8 1690 2394 65 0 124 chr4 144916355 144916592 -10713528 - L1_Mus1 LINE L1 -310 5573 5347 8 1690 7793 40 2 0 chr4 144916591 144917505 -10712615 + L1_Mus1 LINE L1 5650 6565 -2 8 1690 8239 136 66 56 chr4 144917510 144919108 -10711012 - MYSERV6-int LTR ERVK -997 7962 6349 8 1690 311 246 0 0 chr4 144919111 144919172 -10710948 - B1_Mur4 SINE Alu -89 61 1 8 1690 234 196 196 0 chr4 144919202 144919258 -10710862 - PB1D9 SINE Alu -49 71 5 9 1690 1315 131 9 9 chr4 144919261 144919484 -10710636 - MYSERV6-int LTR ERVK -3963 4996 4774 8 1690 2118 176 105 57 chr4 144919484 144919943 -10710177 - RLTR19A LTR ERVK -15 481 1 9 1690 3922 142 35 37 chr4 144919943 144920621 -10709499 - RLTR19-int LTR ERVK 0 6137 5461 9 1690 240 164 0 0 chr4 144920624 144920644 -10709476 + T-rich Low_complexity Low_complexity 36 55 0 9 1690 1093 62 21 7 chr4 144920644 144920789 -10709331 - B1_Mm SINE Alu 0 147 1 9 1690 240 164 0 0 chr4 144920789 144920823 -10709297 + T-rich Low_complexity Low_complexity 2 35 0 9 1690 1781 129 21 7 chr4 144920830 144921112 -10709008 - RLTR19-int LTR ERVK -1096 5041 4756 9 1690 4319 213 65 44 chr4 144921112 144922200 -10707920 - RMER12 LTR ERVK -180 1142 32 9 1690 1503 162 30 5 chr4 144922206 144922472 -10707648 - Lx4B LINE L1 -282 6715 6444 9 1690 5300 194 40 8 chr4 144922602 144923695 -10706425 + Lx2B LINE L1 5873 7000 0 9 1690 3747 164 16 41 chr4 144923695 144924422 -10705698 - Lx4B LINE L1 -579 6479 5771 9 1690 480 231 39 12 chr4 144924445 144924578 -10705542 + B1F SINE Alu 5 145 -4 9 1690 705 204 14 21 chr4 144924593 144924738 -10705382 + B1_Mus2 SINE Alu 4 147 0 9 1690 1043 236 10 0 chr4 144924776 144924984 -10705136 + B3 SINE B2 1 210 -6 9 1690 249 109 15 30 chr4 144924993 144925059 -10705061 + A-rich Low_complexity Low_complexity 2 66 0 9 1690 248 214 0 0 chr4 144925077 144925119 -10705001 + ID_B1 SINE B4 178 219 -5 9 1690 24 0 0 0 chr4 144925129 144925153 -10704967 + AT_rich Low_complexity Low_complexity 1 24 0 9 1690 225 0 0 0 chr4 144925155 144925180 -10704940 + (CATA)n Simple_repeat Simple_repeat 2 26 0 9 1690 210 158 0 0 chr4 144925224 144925262 -10704858 + T-rich Low_complexity Low_complexity 1 38 0 9 1690 471 341 0 8 chr4 144925276 144925403 -10704717 - RSINE1 SINE B4 -26 139 14 9 1690 297 281 34 67 chr4 144925642 144925821 -10704299 + RLTR42-int LTR ERVK 1157 1329 -4193 9 1690 422 223 207 0 chr4 144926267 144926388 -10703732 - B1_Mur2 SINE Alu -1 148 3 9 1690 402 250 199 18 chr4 144927346 144927517 -10702603 + ID_B1 SINE B4 5 206 -18 9 1690 564 286 79 17 chr4 144928852 144929030 -10701090 + ID_B1 SINE B4 29 217 -7 9 1690 789 183 0 8 chr4 144929037 144929169 -10700951 + B1_Mur1 SINE Alu 1 131 -18 9 1690 495 0 0 0 chr4 144929180 144929235 -10700885 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 9 1690 409 218 37 56 chr4 144929304 144929411 -10700709 - B1_Mm SINE Alu -38 109 5 9 1690 1579 255 15 9 chr4 144929816 144930148 -10699972 + MTEb LTR MaLR 9 342 -37 9 1690 857 111 0 14 chr4 144930157 144930303 -10699817 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 9 1690 457 333 53 7 chr4 144930304 144930455 -10699665 - RSINE1 SINE B4 -5 160 3 9 1690 847 318 97 6 chr4 144930640 144930969 -10699151 - MLT1B LTR MaLR -3 387 29 9 1690 679 240 88 33 chr4 144931085 144931266 -10698854 + B3A SINE B2 1 191 -7 9 1690 893 129 7 35 chr4 144931286 144931430 -10698690 + B1_Mur4 SINE Alu 1 140 -10 9 1690 478 270 10 0 chr4 144931461 144931561 -10698559 + PB1D9 SINE Alu 15 115 -5 9 1690 200 243 39 39 chr4 144931613 144931625 -10698495 + polypurine Low_complexity Low_complexity 2 12 0 9 1690 352 270 0 0 chr4 144931625 144931699 -10698421 + ID4_ SINE ID 5 78 -5 9 1690 200 243 39 39 chr4 144931699 144931763 -10698357 + GA-rich Low_complexity Low_complexity 13 78 0 9 1690 2302 171 53 90 chr4 144932419 144932964 -10697156 - RMER5 LTR ERV1 -9 525 1 9 1690 183 291 99 62 chr4 144933401 144933562 -10696558 - MIRc SINE MIR -64 204 38 9 1690 348 64 0 0 chr4 144933806 144933853 -10696267 + (CATA)n Simple_repeat Simple_repeat 4 50 0 9 1690 606 226 20 46 chr4 144934629 144934782 -10695338 - B1_Mur3 SINE Alu 0 149 1 9 1690 1426 62 0 19 chr4 144935503 144935866 -10694254 + (TTTC)n Simple_repeat Simple_repeat 1 356 0 9 1690 495 146 12 0 chr4 144935867 144935949 -10694171 - B1_Mur3 SINE Alu -21 128 46 9 1690 290 260 0 72 chr4 144936454 144936537 -10693583 + ID_B1 SINE B4 81 157 -67 9 1690 278 237 36 84 chr4 144936466 144936558 -10693562 + B1F2 SINE Alu 12 99 -50 9 1690 297 211 0 14 chr4 144936581 144936653 -10693467 + L1MB3 LINE L1 5762 5832 -348 9 1690 4952 133 11 28 chr4 144936695 144937478 -10692642 + RLTR21 LTR ERVK 1 770 -802 9 1690 2783 156 31 137 chr4 144937900 144938590 -10691530 + RLTR21 LTR ERVK 777 1304 -268 9 1690 333 0 0 0 chr4 144938590 144938627 -10691493 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1690 2783 149 2 136 chr4 144938627 144938641 -10691479 + RLTR21 LTR ERVK 1289 1293 -279 9 1690 2467 92 76 110 chr4 144938641 144939140 -10690980 + RLTR45 LTR ERVK 1 482 0 9 1690 2783 149 2 136 chr4 144939140 144939435 -10690685 + RLTR21 LTR ERVK 1294 1572 0 9 1690 752 198 119 5 chr4 144939494 144939687 -10690433 + L1MB3 LINE L1 5821 6035 -148 9 1690 325 309 48 0 chr4 144939747 144939831 -10690289 + RSINE1 SINE B4 60 147 -18 9 1690 661 260 102 5 chr4 144940021 144940218 -10689902 - B3 SINE B2 0 216 1 9 1690 180 0 0 0 chr4 144940266 144940286 -10689834 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1690 297 203 138 75 chr4 144940298 144940378 -10689742 + MLT1I LTR MaLR 327 411 0 9 1690 264 264 85 68 chr4 144940493 144940611 -10689509 + PB1D7 SINE Alu 1 120 0 9 1690 1038 219 14 19 chr4 144940729 144940939 -10689181 - B3 SINE B2 -5 211 3 9 1690 228 67 0 0 chr4 144940953 144940983 -10689137 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1690 438 335 52 58 chr4 144940984 144941122 -10688998 - B3A SINE B2 -18 180 43 9 1690 818 263 116 129 chr4 144941122 144941370 -10688750 - ORR1D2 LTR MaLR -4 366 153 9 1690 1423 65 5 21 chr4 144941370 144941558 -10688562 + B2_Mm1a SINE B2 1 185 -8 9 1690 818 263 116 129 chr4 144941558 144941680 -10688440 - ORR1D2 LTR MaLR -218 152 1 9 1690 438 335 52 58 chr4 144941680 144941715 -10688405 - B3A SINE B2 -156 42 8 9 1690 1997 219 55 53 chr4 144941794 144942324 -10687796 + RLTR20B3 LTR ERVK 21 551 -26 9 1690 594 323 89 55 chr4 144942535 144942836 -10687284 - B4 SINE B4 -18 274 2 9 1690 579 246 17 0 chr4 144942956 144943074 -10687046 + ID_B1 SINE B4 86 205 -19 9 1690 496 262 56 21 chr4 144943074 144943096 -10687024 + B1F SINE Alu 5 149 0 9 1690 989 261 47 24 chr4 144945848 144946146 -10683974 - RLTR18 LTR ERVK -311 305 1 9 1690 236 281 22 70 chr4 144946299 144946412 -10683708 + B1_Mm SINE Alu 5 121 -29 9 1690 796 252 30 15 chr4 144947065 144947262 -10682858 - Lx6 LINE L1 -826 6634 6435 9 1690 257 269 11 103 chr4 144947515 144947602 -10682518 - RMER10A LTR ERVL -363 79 1 9 1690 11805 45 2 0 chr4 144947734 144949149 -10680971 + L1Md_F2 LINE L1 4171 5588 -295 9 1690 8598 48 1 4 chr4 144949150 144950143 -10679977 + L1Md_F2 LINE L1 5590 6579 -3 9 1690 183 80 0 0 chr4 144950160 144950185 -10679935 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1690 534 284 47 0 chr4 144950907 144951034 -10679086 + ETnERV2-int LTR ERVK 7070 7202 -204 9 1690 1400 11 7 34 chr4 144951426 144951688 -10678432 + (TTTC)n Simple_repeat Simple_repeat 1 254 0 9 1690 967 147 11 0 chr4 144951690 144951867 -10678253 + CT-rich Low_complexity Low_complexity 2 180 0 9 1690 408 40 0 0 chr4 144951870 144951920 -10678200 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 9 1690 1203 59 0 0 chr4 144951945 144952081 -10678039 + B1_Mm SINE Alu 3 138 -9 9 1690 7790 82 1 1 chr4 144952313 144953942 -10676178 - L1_Mus1 LINE L1 -1 6566 4936 9 1690 1368 77 22 11 chr4 144954255 144954439 -10675681 + B2_Mm2 SINE B2 2 187 -8 9 1690 4396 123 11 46 chr4 144955210 144956044 -10674076 + ETnERV2-int LTR ERVK 5653 6227 -1179 9 1690 322 44 0 0 chr4 144956247 144956292 -10673828 + ETnERV2-int LTR ERVK 7348 7392 -14 9 1690 1800 132 29 86 chr4 144956322 144956671 -10673449 + RLTR9C LTR ERVK 8 336 -57 9 1690 315 146 0 0 chr4 144956756 144956811 -10673309 + (CAAG)n Simple_repeat Simple_repeat 1 55 0 9 1690 1308 79 6 0 chr4 144956860 144957038 -10673082 - MT2C_Mm LTR ERVL 0 475 297 9 1690 1992 86 3 17 chr4 144956980 144957275 -10672845 - MTA_Mm LTR MaLR -105 291 1 9 1690 751 318 102 6 chr4 144957677 144957780 -10672340 - Lx8 LINE L1 -519 6954 6850 9 1690 204 40 0 0 chr4 144957780 144957805 -10672315 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1690 751 318 102 6 chr4 144957805 144958065 -10672055 - Lx8 LINE L1 -624 6849 6557 9 1690 682 314 74 19 chr4 144959794 144960161 -10669959 - Lx8 LINE L1 -618 6855 6469 9 1690 9470 140 302 102 chr4 144960919 144964952 -10665168 - L1VL2 LINE L1 -754 5129 300 9 1690 932 192 30 26 chr4 144964952 144965181 -10664939 - L1VL2 LINE L1 -5842 493 111 9 1690 376 298 40 35 chr4 144965214 144965388 -10664732 + RMER12 LTR ERVK 1087 1261 -61 9 211 1254 270 45 27 chr4 144965590 144965925 -10664195 + MTEa LTR MaLR 1 341 -38 9 1691 647 86 43 0 chr4 144965928 144966044 -10664076 + (TCTA)n Simple_repeat Simple_repeat 3 123 0 9 1691 520 321 0 7 chr4 144966070 144966205 -10663915 - RSINE1 SINE B4 -26 139 6 9 1691 572 322 113 17 chr4 144966366 144966710 -10663410 - MLT1B LTR MaLR -3 387 11 9 1691 1351 185 4 0 chr4 144966732 144966964 -10663156 + RLTR20D LTR ERVK 1 233 -335 9 1691 497 234 28 0 chr4 144966953 144967060 -10663060 - B1_Mur3 SINE Alu -9 140 31 9 1691 5573 88 78 99 chr4 144967402 144968314 -10661806 - RLTR13B1 LTR ERVK 0 893 1 9 1691 305 305 0 59 chr4 144968467 144968568 -10661552 + ID_B1 SINE B4 72 166 -58 9 1691 300 219 40 40 chr4 144968500 144968576 -10661544 + PB1D7 SINE Alu 18 93 -27 9 1691 294 0 0 61 chr4 144968641 144968690 -10661430 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 1691 5239 57 0 56 chr4 144968748 144969423 -10660697 - L1_Mus2 LINE L1 0 6566 5930 9 1691 329 273 204 0 chr4 144969555 144969732 -10660388 + L1MB3 LINE L1 5823 6035 -148 9 1691 1287 41 7 0 chr4 144969775 144969920 -10660200 + B1_Mus2 SINE Alu 2 147 0 9 1691 340 298 48 0 chr4 144969972 144970056 -10660064 + RSINE1 SINE B4 60 147 -18 9 1691 712 272 13 98 chr4 144970246 144970482 -10659638 - B3 SINE B2 0 216 1 9 1691 261 0 0 0 chr4 144970730 144970759 -10659361 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1691 884 250 24 38 chr4 144970959 144971171 -10658949 - B3 SINE B2 -5 211 3 9 1691 360 333 141 16 chr4 144971205 144971333 -10658787 - B3A SINE B2 -35 181 38 1 1691 709 249 202 15 chr4 144971333 144971628 -10658492 - ORR1D2 LTR MaLR 0 374 1 1 1691 267 103 0 0 chr4 144971755 144971794 -10658326 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1691 245 393 97 56 chr4 144972033 144972184 -10657936 - B4A SINE B4 -11 281 128 1 1691 3580 33 5 0 chr4 144972184 144972578 -10657542 - MTA_Mm LTR MaLR 0 396 1 1 1691 245 393 97 56 chr4 144972578 144972693 -10657427 - B4A SINE B4 -165 127 4 1 1691 360 158 0 0 chr4 144972920 144973015 -10657105 + GA-rich Low_complexity Low_complexity 4 98 0 1 1691 506 151 0 0 chr4 144973017 144973090 -10657030 + ID_B1 SINE B4 123 195 -29 1 1691 991 60 7 43 chr4 144974209 144974349 -10655771 + B1_Mm SINE Alu 13 147 0 1 1691 281 145 43 0 chr4 144974349 144974418 -10655702 + A-rich Low_complexity Low_complexity 1 72 0 1 1691 207 100 0 0 chr4 144974665 144974695 -10655425 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 1 1691 6013 128 51 1 chr4 144974696 144975672 -10654448 - L1_Mur1 LINE L1 -390 5496 4472 1 1691 267 368 60 0 chr4 144975840 144975957 -10654163 - B1_Mur2 SINE Alu -23 126 3 1 1691 336 230 0 155 chr4 144975957 144976027 -10654093 - MT2B LTR ERVL -343 258 205 1 1691 816 231 15 112 chr4 144975978 144976246 -10653874 - RLTR25A LTR ERVK -531 572 331 1 1691 5006 182 38 29 chr4 144976246 144977195 -10652925 - RMER17B LTR ERVK 0 958 1 1 1691 1053 16 8 0 chr4 144977229 144977355 -10652765 + B1_Mm SINE Alu 21 147 0 1 1691 1060 247 7 91 chr4 144977396 144977703 -10652417 - RLTR25A LTR ERVK -770 333 53 1 1691 299 363 29 19 chr4 144977755 144977963 -10652157 - B3 SINE B2 -5 211 2 1 1691 454 320 93 25 chr4 144979203 144979524 -10650596 - ORR1D2 LTR MaLR -3 367 4 1 1691 441 308 14 14 chr4 144979617 144979765 -10650355 - B1_Mur2 SINE Alu -1 148 1 1 1691 189 250 0 0 chr4 144981471 144981547 -10648573 + GA-rich Low_complexity Low_complexity 2 77 0 1 1691 2594 36 0 0 chr4 144981573 144981877 -10648243 + L1Md_F2 LINE L1 5283 5586 -297 1 1691 8431 34 30 2 chr4 144981877 144982839 -10647281 + L1Md_F2 LINE L1 5587 6575 -7 1 1691 229 196 0 21 chr4 144982961 144983008 -10647112 + ZP3AR Satellite Satellite 37 82 -130 1 1691 705 60 120 0 chr4 144982969 144983069 -10647051 + BC1_Mm scRNA scRNA 2 113 -39 1 1691 1063 74 89 0 chr4 144983133 144983268 -10646852 - B1_Mus1 SINE Alu 0 148 2 1 1691 211 87 21 42 chr4 144983427 144983475 -10646645 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1691 27368 81 3 8 chr4 144983830 144988149 -10641971 + L1Md_A LINE L1 438 4729 -1154 1 1691 3316 40 40 0 chr4 144988149 144988544 -10641576 + IAPLTR2a LTR ERVK 1 411 0 1 1691 1071 111 25 82 chr4 144988545 144988741 -10641379 + IAPEz-int LTR ERVK 9 193 -6288 1 1691 228 327 0 0 chr4 144988741 144988796 -10641324 + RLTR27 LTR ERVK 221 275 -34 1 1691 3493 97 16 37 chr4 144988796 144989450 -10640670 + IAPEz-int LTR ERVK 168 662 -5819 1 1691 2637 82 0 3 chr4 144989450 144989793 -10640327 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1691 6463 64 12 11 chr4 144989788 144990614 -10639506 + IAPEz-int LTR ERVK 5653 6479 -2 1 1691 3313 43 40 0 chr4 144990616 144991011 -10639109 + IAPLTR2a LTR ERVK 1 411 0 1 1691 6832 59 2 5 chr4 144991028 144991885 -10638235 + L1Md_F2 LINE L1 4732 5586 -297 1 1691 8709 38 11 1 chr4 144991886 144992871 -10637249 + L1Md_F2 LINE L1 5588 6582 0 1 1691 31 0 0 0 chr4 144992932 144992963 -10637157 + AT_rich Low_complexity Low_complexity 1 31 0 1 1691 279 0 0 0 chr4 144992990 144993021 -10637099 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1691 21 0 0 0 chr4 144993670 144993691 -10636429 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 614 123 8 0 chr4 144994885 144995015 -10635105 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 1691 710 213 8 0 chr4 144995068 144995190 -10634930 - B1F2 SINE Alu -24 125 3 1 1691 483 304 0 15 chr4 144995073 144995210 -10634910 - ID_B1 SINE B4 -26 198 64 1 1691 189 0 0 0 chr4 144995293 144995314 -10634806 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1691 25 51 0 0 chr4 144995983 144996022 -10634098 + AT_rich Low_complexity Low_complexity 1 39 0 1 1691 739 296 77 47 chr4 144996075 144996415 -10633705 - RLTR18 LTR ERVK -266 350 1 1 1691 244 257 39 51 chr4 144996589 144996667 -10633453 + B1F SINE Alu 27 103 -46 1 1691 1282 61 0 0 chr4 144997040 144997187 -10632933 + B1_Mus2 SINE Alu 1 147 0 1 1691 216 0 0 0 chr4 144997187 144997211 -10632909 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1691 1446 294 61 9 chr4 144997517 144997957 -10632163 - Lx6 LINE L1 -826 6634 6172 1 1691 1702 207 87 92 chr4 144998103 144998668 -10631452 + RLTR40 LTR ERVK 220 781 -36 1 1691 245 169 0 17 chr4 144999125 144999185 -10630935 + T-rich Low_complexity Low_complexity 5 63 0 1 1691 977 109 0 0 chr4 145001442 145001579 -10628541 - B1_Mus2 SINE Alu -9 138 2 1 1691 207 0 0 0 chr4 145001774 145001797 -10628323 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1691 397 326 115 19 chr4 145002476 145002745 -10627375 - Lx8 LINE L1 -713 6760 6466 3 1691 2723 218 22 107 chr4 145003043 145003808 -10626312 - RMER6A LTR ERVK 0 756 57 4 1691 876 88 63 42 chr4 145004201 145004344 -10625776 - B1_Mus1 SINE Alu 0 148 3 5 1691 1291 91 27 5 chr4 145005339 145005526 -10624594 - B2_Mm1t SINE B2 -2 191 1 6 1691 1083 75 20 0 chr4 145005888 145006034 -10624086 - B2_Mm2 SINE B2 0 195 47 7 1691 5553 146 54 10 chr4 145007518 145008785 -10621335 - Lx2 LINE L1 -388 6609 5263 8 1691 32345 89 20 18 chr4 145008795 145015019 -10615101 - L1Md_F2 LINE L1 -11 6571 400 9 1691 1022 113 0 0 chr4 145015023 145015165 -10614955 - B1_Mus2 SINE Alu -5 142 1 1 1691 489 227 0 0 chr4 145015178 145015319 -10614801 + (TA)n Simple_repeat Simple_repeat 2 142 0 1 1691 222 118 0 0 chr4 145015333 145015367 -10614753 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1691 1074 76 14 7 chr4 145015371 145015517 -10614603 - B1_Mur4 SINE Alu -3 147 1 1 1691 1335 117 15 0 chr4 145015517 145015722 -10614398 - L1_Mus2 LINE L1 -342 6224 6017 1 1691 1342 82 11 0 chr4 145015734 145015916 -10614204 - B2_Mm1t SINE B2 -9 184 1 1 1691 1401 209 121 28 chr4 145015918 145016341 -10613779 - L1_Mur2 LINE L1 -581 5296 4835 1 1691 36 23 0 0 chr4 145017300 145017343 -10612777 + AT_rich Low_complexity Low_complexity 1 43 0 1 1691 309 359 60 6 chr4 145017585 145017767 -10612353 + Tigger1 DNA MER2_type 1940 2131 -287 1 1691 708 291 14 24 chr4 145017857 145018065 -10612055 + B3 SINE B2 6 211 -5 1 1691 230 0 33 0 chr4 145018188 145018218 -10611902 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1691 242 347 13 0 chr4 145018567 145018642 -10611478 - B3A SINE B2 -121 77 2 2 1691 22 0 0 0 chr4 145019379 145019401 -10610719 + AT_rich Low_complexity Low_complexity 1 22 0 2 1691 935 108 0 21 chr4 145019410 145019552 -10610568 - B1_Mus1 SINE Alu -1 147 9 2 1691 1163 76 0 0 chr4 145019830 145019975 -10610145 + B1_Mus2 SINE Alu 2 146 -1 2 1691 247 224 43 29 chr4 145020159 145020228 -10609892 - Lx8 LINE L1 -764 6709 6640 2 1691 854 336 37 8 chr4 145020249 145020603 -10609517 - ORR1D2 LTR MaLR 0 370 7 2 1691 975 171 64 75 chr4 145020632 145020897 -10609223 - RLTRETN_Mm LTR ERVK 0 322 61 2 1691 3378 109 2 0 chr4 145020907 145021421 -10608699 - L1_Mm LINE L1 -151 5732 5218 2 1691 242 184 21 65 chr4 145021427 145021520 -10608600 - L1_Mur3 LINE L1 -4451 1429 1341 2 1691 183 80 0 0 chr4 145022150 145022175 -10607945 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 3 1691 23 0 0 0 chr4 145022758 145022781 -10607339 + AT_rich Low_complexity Low_complexity 1 23 0 3 1691 865 226 5 5 chr4 145023089 145023276 -10606844 - RMER6A LTR ERVK 0 756 570 3 1691 1628 152 10 17 chr4 145024052 145024353 -10605767 - Lx2 LINE L1 -388 6609 6311 3 1691 657 153 0 25 chr4 145024353 145024474 -10605646 - B1_Mus2 SINE Alu -29 118 1 3 1691 2143 143 36 3 chr4 145024475 145024860 -10605260 - L1_Mus3 LINE L1 -28 6610 6213 3 1691 604 161 8 8 chr4 145024861 145024986 -10605134 + CT-rich Low_complexity Low_complexity 1 125 0 3 1691 243 0 0 0 chr4 145024986 145025013 -10605107 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 3 1691 870 10 0 0 chr4 145025013 145025112 -10605008 + (TTTTC)n Simple_repeat Simple_repeat 4 102 0 3 1691 937 126 0 0 chr4 145025113 145025248 -10604872 - B1_Mus1 SINE Alu -13 135 1 3 1691 1282 122 15 0 chr4 145025248 145025453 -10604667 - L1_Mus3 LINE L1 -342 6224 6017 3 1691 1272 102 32 0 chr4 145025466 145025653 -10604467 - B2_Mm1t SINE B2 0 193 1 4 1691 2076 198 4 2 chr4 145025655 145026116 -10604004 - L1_Mur2 LINE L1 -581 5296 4835 4 1691 35 24 0 0 chr4 145027087 145027129 -10602991 + AT_rich Low_complexity Low_complexity 1 42 0 4 1691 312 348 60 6 chr4 145027364 145027546 -10602574 + Tigger1 DNA MER2_type 1940 2131 -287 4 1691 690 290 19 24 chr4 145027636 145027848 -10602272 + B3 SINE B2 6 216 0 4 1691 951 107 0 14 chr4 145028712 145028854 -10601266 - B1_Mus1 SINE Alu 0 148 9 4 1691 1090 75 0 40 chr4 145029141 145029293 -10600827 + B1_Mus2 SINE Alu 2 147 0 4 1691 247 224 43 29 chr4 145029483 145029552 -10600568 - Lx8 LINE L1 -764 6709 6640 4 1691 33722 68 2 7 chr4 145030372 145036048 -10594072 - L1Md_F2 LINE L1 -3 6579 926 4 1691 266 0 0 29 chr4 145036048 145036083 -10594037 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1691 1179 49 0 0 chr4 145036083 145036221 -10593899 - B1_Mm SINE Alu -4 143 6 5 1691 3290 138 14 86 chr4 145036221 145036560 -10593560 - L1Md_F2 LINE L1 -5799 925 407 4 1691 23 33 0 0 chr4 145036696 145036726 -10593394 + AT_rich Low_complexity Low_complexity 1 30 0 5 1691 1108 90 0 0 chr4 145037560 145037705 -10592415 - B1_Mus2 SINE Alu -1 146 2 5 1691 21 0 0 0 chr4 145038303 145038324 -10591796 + AT_rich Low_complexity Low_complexity 1 21 0 5 1691 2066 205 13 7 chr4 145038597 145039048 -10591072 - Lx2 LINE L1 -2 6995 6542 5 1691 423 188 0 10 chr4 145039048 145039138 -10590982 - Lx2 LINE L1 -577 6420 6331 5 1691 1297 131 5 9 chr4 145039511 145040778 -10589342 + MMSAT4 Satellite Satellite 1 1261 0 5 1691 504 344 74 10 chr4 145041339 145041636 -10588484 + RMER15 LTR ERVL 241 556 -19 5 1691 303 277 48 12 chr4 145041711 145041795 -10588325 + URR1B DNA MER1_type 7 93 -132 5 1691 594 272 0 6 chr4 145044027 145044208 -10585912 - L1_Mur2 LINE L1 -1655 4222 4043 5 1691 4581 239 30 20 chr4 145044210 145045367 -10584753 - MYSERV6-int LTR ERVK -5094 3865 2686 6 1691 180 0 0 0 chr4 145045367 145045387 -10584733 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1691 4581 239 30 20 chr4 145045387 145045534 -10584586 - MYSERV6-int LTR ERVK -6274 2685 2548 6 1691 2995 53 0 0 chr4 145046882 145047238 -10582882 + IAPEY2_LTR LTR ERVK 1 356 -1 6 1691 667 133 57 51 chr4 145047239 145047397 -10582723 + IAPLTR4_I LTR ERVK 22 180 -1290 6 1691 8601 131 11 37 chr4 145047396 145048893 -10581227 + IAPEY3-int LTR ERVK 524 1982 -5698 6 1691 3368 69 9 0 chr4 145048870 145049318 -10580802 + IAPEY3-int LTR ERVK 2238 2689 -4991 6 1691 203 368 44 0 chr4 145049333 145049447 -10580673 + L3b LINE CR1 335 453 -29 6 1691 2614 118 31 32 chr4 145049447 145050096 -10580024 + IAPEY3-int LTR ERVK 6984 7581 0 6 1691 3043 50 0 0 chr4 145050096 145050453 -10579667 + IAPEY2_LTR LTR ERVK 1 357 0 6 1691 226 47 22 44 chr4 145051797 145051842 -10578278 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1691 1137 71 0 0 chr4 145051848 145051988 -10578132 - B1_Mus2 SINE Alu -7 140 1 6 1691 1048 258 129 40 chr4 145052154 145052557 -10577563 - RMER10A LTR ERVL -3 439 1 6 1691 682 202 20 15 chr4 145052656 145052852 -10577268 + Lx2B LINE L1 6016 6212 -788 6 1691 769 138 7 37 chr4 145052852 145052988 -10577132 + ORR1A3 LTR MaLR 183 314 -12 7 1691 755 154 0 0 chr4 145058241 145058364 -10571756 - Lx LINE L1 -619 6035 5913 7 1691 3836 123 62 2 chr4 145058364 145058926 -10571194 + Lx LINE L1 6043 6638 -16 7 1691 416 19 19 0 chr4 145059126 145059179 -10570941 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1691 5167 197 46 42 chr4 145060165 145061272 -10568848 - RLTR13D3 LTR ERVK 0 1114 4 7 1691 1151 109 35 0 chr4 145061477 145061651 -10568469 + B2_Mm2 SINE B2 8 187 -8 7 1691 691 248 86 6 chr4 145061651 145061813 -10568307 + B3 SINE B2 24 198 -18 7 1691 200 312 61 44 chr4 145062270 145062384 -10567736 - L2a LINE L2 -6 3420 3305 7 1691 837 171 43 7 chr4 145062717 145062858 -10567262 + B1_Mur2 SINE Alu 2 147 -2 7 1691 180 0 0 0 chr4 145062859 145062879 -10567241 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1691 21 0 0 0 chr4 145063020 145063041 -10567079 + AT_rich Low_complexity Low_complexity 1 21 0 7 1691 10340 24 93 1 chr4 145063354 145065324 -10564796 - L1Md_T LINE L1 0 6582 4430 8 1691 308 239 0 29 chr4 145065470 145065539 -10564581 - ID4_ SINE ID -14 69 3 8 1691 854 164 50 0 chr4 145065648 145065788 -10564332 + B1_Mus2 SINE Alu 1 147 0 8 1691 886 249 34 19 chr4 145065801 145066010 -10564110 - B3 SINE B2 -4 212 1 8 1691 203 289 59 40 chr4 145066013 145066114 -10564006 + MIR SINE MIR 125 227 -35 8 1691 627 301 19 37 chr4 145066255 145066469 -10563651 - ID_B1 SINE B4 -2 222 13 8 1691 952 223 34 29 chr4 145066511 145066719 -10563401 - B3 SINE B2 -7 209 1 8 1691 310 241 13 25 chr4 145066938 145067106 -10563014 + (TG)n Simple_repeat Simple_repeat 1 165 0 8 1691 180 0 0 0 chr4 145067120 145067140 -10562980 + (TATG)n Simple_repeat Simple_repeat 4 23 0 8 1691 1053 181 22 0 chr4 145067210 145067392 -10562728 + B2_Mm2 SINE B2 2 187 -8 8 1691 302 219 60 24 chr4 145067434 145067518 -10562602 + B4A SINE B4 2 88 -204 9 1691 486 204 273 29 chr4 145067526 145067698 -10562422 + B3 SINE B2 3 216 0 9 1691 420 298 9 9 chr4 145067975 145068090 -10562030 + PB1D10 SINE Alu 1 115 -2 9 1691 964 228 41 0 chr4 145068091 145068288 -10561832 + B3 SINE B2 2 206 -10 9 1691 676 249 144 23 chr4 145068431 145068604 -10561516 + B3A SINE B2 1 194 -4 9 1691 297 89 0 0 chr4 145069868 145069913 -10560207 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 9 1691 294 345 22 11 chr4 145069925 145070016 -10560104 - PB1D10 SINE Alu -25 92 1 9 1691 1183 63 7 0 chr4 145070495 145070637 -10559483 + B1_Mm SINE Alu 2 144 -3 9 1691 734 231 14 0 chr4 145070951 145071094 -10559026 + B1_Mus1 SINE Alu 2 146 -2 9 1691 1387 65 37 16 chr4 145071402 145071590 -10558530 - B2_Mm1t SINE B2 0 193 2 9 1691 272 294 34 34 chr4 145071848 145071936 -10558184 + PB1D9 SINE Alu 13 100 -20 1 1691 720 175 296 18 chr4 145072010 145072152 -10557968 + B3 SINE B2 1 187 -29 1 1691 198 0 0 0 chr4 145072152 145072174 -10557946 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1691 720 175 296 18 chr4 145072174 145072200 -10557920 + B3 SINE B2 188 215 -1 1 1691 241 347 106 72 chr4 145072245 145072453 -10557667 + ORR1E LTR MaLR 20 234 -125 1 1691 849 154 36 30 chr4 145072428 145072595 -10557525 + URR1A DNA MER1_type 57 224 -2 1 1691 293 200 42 28 chr4 145072820 145072892 -10557228 + B3A SINE B2 1 73 -125 1 1691 537 308 19 12 chr4 145072986 145073147 -10556973 + RSINE1 SINE B4 4 165 0 1 1691 1119 83 145 13 chr4 145073200 145073359 -10556761 + B2_Mm2 SINE B2 2 181 -14 1 1691 251 274 16 2 chr4 145073768 145073842 -10556278 + B1_Mur1 SINE Alu 53 126 -23 1 1691 216 289 0 0 chr4 145074302 145074354 -10555766 + B4 SINE B4 8 59 -233 1 1691 485 265 114 0 chr4 145074398 145074530 -10555590 + B4A SINE B4 140 286 -6 1 1691 271 333 7 65 chr4 145075290 145075335 -10554785 - RMER15 LTR ERVL -151 424 380 1 1691 2037 153 33 0 chr4 145075335 145075636 -10554484 + RLTR10E LTR ERVK 1 311 0 1 1691 271 333 7 65 chr4 145075636 145075728 -10554392 - RMER15 LTR ERVL -196 379 295 1 1691 361 299 0 0 chr4 145075733 145075830 -10554290 + MTEa LTR MaLR 3 99 -280 1 1691 638 282 106 11 chr4 145075867 145076046 -10554074 + MT2A LTR ERVL 183 378 -155 1 1691 258 143 0 0 chr4 145076630 145076679 -10553441 + (TCC)n Simple_repeat Simple_repeat 2 50 0 1 1691 1115 116 0 0 chr4 145077280 145077427 -10552693 - B1_Mus1 SINE Alu 0 148 2 1 1691 21 0 0 0 chr4 145078680 145078701 -10551419 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 232 269 14 69 chr4 145079470 145079542 -10550578 - RMER10A LTR ERVL -363 79 12 1 1691 7769 139 121 12 chr4 145079859 145081966 -10548154 - L1_Mus1 LINE L1 0 6567 4196 1 1691 1724 162 6 104 chr4 145081966 145082323 -10547797 - RLTRETN_Mm LTR ERVK 0 322 1 1 1691 7769 202 220 21 chr4 145082323 145082684 -10547436 - L1_Mus1 LINE L1 -1682 4195 3823 1 1691 3268 187 11 33 chr4 145082684 145083298 -10546822 + MT2B LTR ERVL 1 601 0 1 1691 7769 202 220 21 chr4 145083298 145083312 -10546808 - L1_Mus1 LINE L1 -2055 3822 3814 1 1691 905 141 43 48 chr4 145083312 145083498 -10546622 - B2_Mm2 SINE B2 -8 187 3 1 1691 7769 202 220 21 chr4 145083498 145083640 -10546480 - L1_Mus1 LINE L1 -2064 3813 3476 1 1691 1208 82 0 0 chr4 145083640 145083787 -10546333 - B1_Mm SINE Alu 0 147 1 1 1691 7769 202 220 21 chr4 145083787 145084136 -10545984 - L1_Mus1 LINE L1 -2402 3475 3124 1 1691 514 279 48 12 chr4 145084165 145084332 -10545788 - Lx2B LINE L1 -6 6994 6822 1 1691 2595 160 16 18 chr4 145084449 145084888 -10545232 - BGLII_B LTR ERVK 0 441 4 1 1691 4862 232 103 82 chr4 145084957 145085892 -10544228 - MYSERV6-int LTR ERVK -78 2248 1279 1 1691 1175 48 13 52 chr4 145085892 145086046 -10544074 - B1_Mus1 SINE Alu 0 148 1 1 1691 5584 232 79 52 chr4 145086046 145087287 -10542833 - MYSERV6-int LTR ERVK -4342 4617 2425 1 1691 181 143 0 0 chr4 145087287 145087315 -10542805 + L2 LINE L2 1637 1664 -1755 1 1691 5584 232 79 52 chr4 145087315 145088668 -10541452 - MYSERV6-int LTR ERVK -4342 2424 30 1 1691 231 36 0 0 chr4 145088694 145088722 -10541398 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1691 819 142 0 30 chr4 145088729 145088860 -10541260 - B1_Mus1 SINE Alu -20 128 2 1 1691 1932 118 3 58 chr4 145088966 145089308 -10540812 - BGLII_B LTR ERVK -118 323 1 1 1691 5648 186 40 34 chr4 145089703 145090811 -10539309 - RLTR13D3 LTR ERVK 0 1114 1 1 1691 407 224 16 116 chr4 145092235 145092254 -10537866 + MT2B LTR ERVL 149 155 -446 1 1691 916 148 7 21 chr4 145092254 145092399 -10537721 + B1_Mus1 SINE Alu 1 143 -5 1 1691 1233 146 16 0 chr4 145092587 145092772 -10537348 + B2_Mm2 SINE B2 1 188 -7 1 1691 424 158 19 19 chr4 145094714 145094817 -10535303 + L1_Mur2 LINE L1 3662 3764 -2113 1 1691 480 236 66 26 chr4 145094812 145094964 -10535156 - Lx7 LINE L1 -6 7690 7533 1 1691 247 341 24 0 chr4 145095290 145095372 -10534748 - RLTR18 LTR ERVK -2 510 427 1 1691 436 296 38 38 chr4 145095554 145095737 -10534383 - RMER21B LTR ERV1 -335 507 325 1 1691 1330 278 32 30 chr4 145095771 145096304 -10533816 - RLTR18 LTR ERVK -105 511 1 1 211 2362 120 171 29 chr4 145096413 145096833 -10533287 - RLTR45 LTR ERVK -2 480 1 1 1692 264 280 0 62 chr4 145096904 145096984 -10533136 + B1_Mm SINE Alu 26 100 -47 1 1692 630 153 0 0 chr4 145097610 145097721 -10532399 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 1692 1201 301 75 11 chr4 145097742 145098183 -10531937 - Lx6 LINE L1 -820 6640 6172 1 1692 1863 226 105 118 chr4 145098300 145099116 -10531004 + RLTR40 LTR ERVK 1 806 -11 1 1692 378 129 0 0 chr4 145099577 145099639 -10530481 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 1692 219 69 0 0 chr4 145100481 145100510 -10529610 + (CAAG)n Simple_repeat Simple_repeat 3 31 0 1 1692 1409 81 32 5 chr4 145101138 145101325 -10528795 - B2_Mm1t SINE B2 0 193 2 1 1692 200 35 35 0 chr4 145101743 145101772 -10528348 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1 1692 1140 101 0 0 chr4 145102399 145102547 -10527573 - B1_Mus1 SINE Alu 0 148 1 1 1692 693 330 117 16 chr4 145103097 145103541 -10526579 - Lx8 LINE L1 -519 6954 6466 1 1692 1550 231 69 3 chr4 145103837 145103978 -10526142 - RMER6A LTR ERVK 0 756 604 1 1692 1171 90 0 14 chr4 145103978 145104125 -10525995 - B1_Mus2 SINE Alu -1 146 2 1 1692 1550 231 69 3 chr4 145104125 145104361 -10525759 - RMER6A LTR ERVK -153 603 355 1 1692 204 214 0 0 chr4 145104560 145104602 -10525518 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 1 1692 4482 45 4 10 chr4 145106435 145106950 -10523170 - LTRIS3 LTR ERV1 0 512 1 1 1692 892 328 71 9 chr4 145107283 145107745 -10522375 - Lx8 LINE L1 -519 6954 6464 1 1692 3660 110 4 6 chr4 145107907 145108419 -10521701 + L1_Mus3 LINE L1 6128 6638 0 1 1692 1937 194 2 82 chr4 145108556 145108758 -10521362 - RMER6A LTR ERVK 0 756 578 1 1692 459 0 0 0 chr4 145108758 145108809 -10521311 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 1692 757 112 165 60 chr4 145108812 145108945 -10521175 - B1_Mus1 SINE Alu 0 148 2 1 1692 1937 225 38 80 chr4 145108945 145109556 -10520564 - RMER6A LTR ERVK -155 601 56 1 1692 275 275 12 0 chr4 145110053 145110133 -10519987 - L1MEg LINE L1 -4698 1386 1306 1 1692 6036 155 15 4 chr4 145111107 145112910 -10517210 - Lx3B LINE L1 -293 6680 4857 1 1692 28 48 0 0 chr4 145113338 145113380 -10516740 + AT_rich Low_complexity Low_complexity 1 42 0 1 1692 390 352 83 30 chr4 145113407 145113805 -10516315 + Tigger1 DNA MER2_type 1712 2130 -288 1 1692 600 301 24 33 chr4 145113889 145114099 -10516021 + B3 SINE B2 9 216 0 1 1692 412 255 80 70 chr4 145115086 145115356 -10514764 - RLTR25A LTR ERVK 0 1028 700 1 1692 23 33 0 0 chr4 145115459 145115489 -10514631 + AT_rich Low_complexity Low_complexity 1 30 0 1 1692 1414 23 6 11 chr4 145115505 145115684 -10514436 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1692 180 0 0 0 chr4 145115686 145115706 -10514414 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 1 1692 6307 132 43 54 chr4 145115706 145117575 -10512545 - Lx3_Mus LINE L1 -15 6994 5158 1 1692 2249 67 74 0 chr4 145117741 145118038 -10512082 + L1_Mus1 LINE L1 6249 6567 0 1 1692 423 0 0 0 chr4 145118537 145118584 -10511536 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1692 1088 73 60 0 chr4 145118584 145118734 -10511386 - B2_Mm1a SINE B2 -33 160 2 1 1692 876 312 55 65 chr4 145119383 145119750 -10510370 - ORR1D2 LTR MaLR -5 369 7 1 1692 249 329 0 23 chr4 145119847 145119934 -10510186 - B1_Mur2 SINE Alu -1 148 64 1 1692 396 0 0 0 chr4 145119978 145120022 -10510098 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1692 376 67 33 0 chr4 145120595 145120655 -10509465 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1692 24 32 0 0 chr4 145121675 145121706 -10508414 + AT_rich Low_complexity Low_complexity 1 31 0 1 1692 25 51 0 0 chr4 145122231 145122270 -10507850 + AT_rich Low_complexity Low_complexity 1 39 0 1 1692 450 0 0 0 chr4 145123038 145123088 -10507032 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1 1692 679 69 0 0 chr4 145123088 145123175 -10506945 - B2_Mm1t SINE B2 -33 160 74 1 1692 375 340 19 25 chr4 145123744 145123901 -10506219 - B3 SINE B2 -1 215 60 1 1692 1231 114 23 0 chr4 145123935 145124111 -10506009 + B2_Mm2 SINE B2 2 181 -14 1 1692 270 116 0 0 chr4 145124238 145124281 -10505839 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1 1692 238 26 0 49 chr4 145124451 145124492 -10505628 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1692 978 109 0 35 chr4 145124492 145124635 -10505485 - B1_Mus2 SINE Alu -8 139 2 1 1692 253 295 26 9 chr4 145124746 145124859 -10505261 + MurSatRep1 Unknown Unknown 641 755 -1382 1 1692 3833 127 68 15 chr4 145125532 145126205 -10503915 - L1Md_F2 LINE L1 -13 6569 5861 1 1692 405 0 0 0 chr4 145126342 145126387 -10503733 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1692 1354 129 2 2 chr4 145126868 145128325 -10501795 + MMSAT4 Satellite Satellite 1 1457 0 1 1692 549 350 74 13 chr4 145128861 145129159 -10500961 + RMER15 LTR ERVL 243 558 -17 1 1692 377 256 44 11 chr4 145129227 145129318 -10500802 + URR1B DNA MER1_type 3 96 -129 1 1692 28 0 0 0 chr4 145131801 145131829 -10498291 + AT_rich Low_complexity Low_complexity 1 28 0 1 1692 6486 99 4 1 chr4 145131833 145133313 -10496807 - L1_Mus1 LINE L1 0 6567 5081 1 1692 396 220 58 39 chr4 145133313 145133417 -10496703 - B3A SINE B2 -92 106 1 1 1692 260 245 58 48 chr4 145133420 145133523 -10496597 + MIR SINE MIR 125 228 -34 1 1692 580 315 30 51 chr4 145133606 145133888 -10496232 - ID_B1 SINE B4 -14 278 7 1 1692 838 238 24 33 chr4 145133921 145134134 -10495986 - B3 SINE B2 -5 211 1 1 1692 284 265 13 17 chr4 145134341 145134578 -10495542 + (TG)n Simple_repeat Simple_repeat 1 235 0 1 1692 1067 148 17 0 chr4 145134617 145134793 -10495327 + B2_Mm2 SINE B2 3 181 -14 1 1692 275 288 12 36 chr4 145134984 145135090 -10495030 + PB1D10 SINE Alu 13 114 -6 1 1692 908 179 107 5 chr4 145135093 145135289 -10494831 + B3 SINE B2 1 216 0 2 1692 657 253 173 0 chr4 145135420 145135582 -10494538 + B3 SINE B2 1 190 -26 2 1692 307 127 0 48 chr4 145136866 145136949 -10493171 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 2 1692 301 245 47 84 chr4 145136949 145137071 -10493049 - B1F2 SINE Alu -20 128 12 2 1692 2796 77 48 0 chr4 145137583 145137961 -10492159 - MTA_Mm LTR MaLR 0 396 1 2 1692 210 37 0 0 chr4 145138331 145138358 -10491762 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1692 222 267 101 34 chr4 145138917 145139006 -10491114 + PB1D10 SINE Alu 6 100 -20 2 1692 554 192 7 8 chr4 145139080 145139221 -10490899 + B3 SINE B2 1 186 -30 2 1692 198 91 0 0 chr4 145139221 145139254 -10490866 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1692 316 222 14 27 chr4 145139254 145139276 -10490844 + B3 SINE B2 187 208 -8 2 1692 231 368 38 0 chr4 145139299 145139405 -10490715 + ORR1E LTR MaLR 1 110 -249 2 1692 906 147 30 30 chr4 145139501 145139669 -10490451 + URR1B DNA MER1_type 56 223 -2 1 1692 428 98 0 0 chr4 145139849 145139910 -10490210 + B2_Mm2 SINE B2 1 61 -134 2 1692 1868 140 248 35 chr4 145139898 145140358 -10489762 - RLTR6_Mm LTR ERV1 -60 594 37 2 1692 999 52 0 22 chr4 145140475 145140613 -10489507 + B2_Mm1a SINE B2 59 193 0 2 1692 293 254 28 0 chr4 145140671 145140742 -10489378 + B3A SINE B2 1 73 -125 2 1692 581 282 38 13 chr4 145140836 145140994 -10489126 + RSINE1 SINE B4 4 165 0 2 1692 787 81 186 0 chr4 145141045 145141169 -10488951 + B2_Mm2 SINE B2 2 148 -47 2 1692 528 126 0 0 chr4 145141169 145141256 -10488864 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 1692 263 288 14 14 chr4 145141679 145141753 -10488367 + B1F1 SINE Alu 53 126 -23 2 1692 729 104 403 12 chr4 145142255 145142515 -10487605 - LTRIS3 LTR ERV1 0 512 1 2 1692 292 73 0 0 chr4 145142516 145142557 -10487563 - RLTR6-int LTR ERV1 -1 7777 7737 2 1692 578 209 35 0 chr4 145142695 145142810 -10487310 - RMER16-int LTR ERVK -4601 805 687 2 1692 714 147 128 6 chr4 145142798 145142962 -10487158 - RMER16-int LTR ERVK -5082 324 141 2 1692 1154 55 7 0 chr4 145142967 145143113 -10487007 + B1_Mm SINE Alu 1 147 0 2 1692 445 286 163 34 chr4 145143649 145143884 -10486236 - RMER15 LTR ERVL -19 556 288 2 1692 365 299 0 0 chr4 145143884 145143981 -10486139 + MTEa LTR MaLR 3 99 -280 2 1692 572 288 87 32 chr4 145143988 145144207 -10485913 + MT2A LTR ERVL 158 388 -145 2 1692 288 111 31 16 chr4 145144799 145144863 -10485257 + CT-rich Low_complexity Low_complexity 1 65 0 2 1692 1579 42 0 10 chr4 145145604 145145796 -10484324 - B2_Mm1t SINE B2 -2 191 2 2 1692 263 232 14 28 chr4 145145823 145145894 -10484226 - RLTR18-int LTR ERVK -1071 4290 4221 2 1692 1150 58 0 0 chr4 145146300 145146439 -10483681 + B1_Mus2 SINE Alu 1 139 -8 2 1692 3084 294 59 35 chr4 145147613 145148923 -10481197 - Lx6 LINE L1 -324 7136 5796 2 1692 420 20 0 0 chr4 145148934 145148983 -10481137 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 1692 243 140 0 0 chr4 145150142 145150192 -10479928 + (TCC)n Simple_repeat Simple_repeat 3 52 0 2 1692 1052 118 0 0 chr4 145150227 145150371 -10479749 - B1_Mus1 SINE Alu -1 147 4 2 1692 232 324 42 0 chr4 145151085 145151156 -10478964 - RLTR18B LTR ERVK -7 505 432 2 1692 1178 319 40 36 chr4 145151593 145152113 -10478007 - RLTR18 LTR ERVK -88 528 7 2 1692 256 271 5 69 chr4 145152293 145152389 -10477731 + B1_Mm SINE Alu 26 120 -29 2 1692 1433 54 5 0 chr4 145152431 145152617 -10477503 - LTRIS4 LTR ERV1 -320 187 1 2 1692 883 241 30 17 chr4 145152622 145152854 -10477266 + RLTR40 LTR ERVK 572 806 -11 2 1692 216 200 0 0 chr4 145153320 145153370 -10476750 + CT-rich Low_complexity Low_complexity 3 52 0 2 1692 300 50 0 0 chr4 145153554 145153579 -10476541 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1692 955 110 7 52 chr4 145153579 145153733 -10476387 - B1_Mus2 SINE Alu 0 147 1 2 1692 300 50 0 0 chr4 145153733 145153747 -10476373 + (T)n Simple_repeat Simple_repeat 1 14 0 2 1692 495 0 0 0 chr4 145154335 145154390 -10475730 + (CAAG)n Simple_repeat Simple_repeat 1 55 0 2 1692 13411 103 13 1 chr4 145154789 145156887 -10473233 - L1_Mm LINE L1 -1643 4240 2119 2 1692 1044 306 37 23 chr4 145157450 145157801 -10472319 - ORR1D2 LTR MaLR -9 361 6 2 1692 527 286 7 33 chr4 145157891 145158043 -10472077 - B1_Mur2 SINE Alu -1 148 1 2 1692 4297 27 63 18 chr4 145158621 145159180 -10470940 - RLTR6_Mm LTR ERV1 -70 584 1 2 1692 16071 33 6 2 chr4 145159180 145161166 -10468954 - MMVL30-int LTR ERV1 0 3698 1707 2 1692 6141 54 5 40 chr4 145161168 145162033 -10468087 - MMVL30-int LTR ERV1 -2093 1605 772 2 1692 262 96 19 0 chr4 145162381 145162433 -10467687 - MMVL30-int LTR ERV1 -2922 377 325 2 1692 6253 20 46 17 chr4 145162459 145163265 -10466855 - RLTR6-int LTR ERV1 -6949 829 1 2 1692 4438 30 60 17 chr4 145163266 145163845 -10466275 - RLTR6_Mm LTR ERV1 -50 604 1 2 1692 297 135 0 0 chr4 145164978 145165030 -10465090 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2 1692 652 129 0 0 chr4 145165194 145165295 -10464825 + BC1_Mm scRNA scRNA 2 102 -50 2 1692 1188 75 0 0 chr4 145165348 145165495 -10464625 - B1_Mus1 SINE Alu 0 148 2 2 1692 198 82 39 39 chr4 145165647 145165698 -10464422 + T-rich Low_complexity Low_complexity 2 52 0 2 1692 450 130 17 135 chr4 145166052 145166230 -10463890 + Lx3A LINE L1 6820 6976 -5 2 1692 24 53 0 0 chr4 145166393 145166431 -10463689 + AT_rich Low_complexity Low_complexity 1 38 0 2 1692 183 42 0 0 chr4 145166447 145166471 -10463649 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1692 1308 62 49 33 chr4 145166471 145166655 -10463465 - B2_Mm2 SINE B2 -7 188 2 2 1692 334 125 0 5 chr4 145166655 145166722 -10463398 - L1_Mus1 LINE L1 -23 6559 6495 2 1692 261 0 0 0 chr4 145166722 145166751 -10463369 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1692 2498 75 6 3 chr4 145167238 145167585 -10462535 - L1_Mus1 LINE L1 -90 6477 6130 2 1692 2139 89 0 0 chr4 145167578 145167871 -10462249 + L1_Mm LINE L1 5363 5655 -228 2 1692 22 56 0 0 chr4 145168433 145168469 -10461651 + AT_rich Low_complexity Low_complexity 1 36 0 2 1692 744 151 0 0 chr4 145169686 145169865 -10460255 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1692 713 213 8 0 chr4 145169918 145170040 -10460080 - B1F2 SINE Alu -24 125 3 2 1692 467 311 0 15 chr4 145169923 145170060 -10460060 - ID_B1 SINE B4 -26 198 64 2 1692 282 73 0 0 chr4 145170143 145170184 -10459936 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1692 26 50 0 0 chr4 145170853 145170893 -10459227 + AT_rich Low_complexity Low_complexity 1 40 0 2 1692 822 306 59 21 chr4 145170945 145171282 -10458838 - RLTR18 LTR ERVK -266 350 1 2 1692 243 256 34 79 chr4 145171457 145171546 -10458574 + B1F SINE Alu 27 111 -38 2 1692 1175 68 0 0 chr4 145171908 145172055 -10458065 + B1_Mus2 SINE Alu 1 147 0 2 1692 1232 295 62 11 chr4 145172382 145172821 -10457299 - Lx6 LINE L1 -826 6634 6174 2 1692 1681 195 98 93 chr4 145172970 145173529 -10456591 + RLTR40 LTR ERVK 220 781 -36 2 1692 421 165 10 10 chr4 145173992 145174090 -10456030 + CT-rich Low_complexity Low_complexity 3 100 0 2 1692 21 0 0 0 chr4 145175592 145175613 -10454507 + AT_rich Low_complexity Low_complexity 1 21 0 2 1692 2571 135 143 24 chr4 145175861 145176363 -10453757 - LTRIS2 LTR ERV1 0 564 3 2 1692 445 330 99 34 chr4 145177627 145178010 -10452110 - Lx8 LINE L1 -600 6873 6466 2 1692 2579 216 32 108 chr4 145178311 145179068 -10451052 - RMER6A LTR ERVK -2 754 56 2 1692 971 89 0 126 chr4 145179476 145179643 -10450477 - B1_Mus1 SINE Alu 0 148 3 2 1692 405 0 0 0 chr4 145180636 145180681 -10449439 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 1692 1126 101 6 0 chr4 145180682 145180841 -10449279 - B2_Mm1a SINE B2 -33 160 1 2 1692 3099 40 173 0 chr4 145181140 145181545 -10448575 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1692 1058 89 20 0 chr4 145181617 145181763 -10448357 - B2_Mm2 SINE B2 0 195 47 2 1692 396 171 0 62 chr4 145183233 145183314 -10446806 - Lx2 LINE L1 -390 6607 6532 2 1692 3402 165 63 41 chr4 145183310 145184029 -10446091 - Lx2 LINE L1 -943 6054 5298 2 1692 3554 129 39 31 chr4 145184029 145184048 -10446072 - L1_Mus3 LINE L1 -1 6637 6613 2 1692 1058 82 0 20 chr4 145184048 145184198 -10445922 - B1_Mus2 SINE Alu 0 147 1 2 1692 3554 129 39 31 chr4 145184198 145184586 -10445534 - L1_Mus3 LINE L1 -26 6612 6213 2 1692 1260 35 24 0 chr4 145184586 145184755 -10445365 + (TTCTC)n Simple_repeat Simple_repeat 2 174 0 2 1692 938 119 0 0 chr4 145184756 145184890 -10445230 - B1_Mus1 SINE Alu -14 134 1 2 1692 3554 129 39 31 chr4 145184890 145185095 -10445025 - L1_Mus3 LINE L1 -426 6212 6018 2 1692 3402 196 55 79 chr4 145185095 145185326 -10444794 - Lx2 LINE L1 -580 5297 5097 2 1692 1512 48 16 0 chr4 145185326 145185514 -10444606 - B2_Mm1a SINE B2 -1 192 2 2 1692 3402 196 55 79 chr4 145185514 145185777 -10444343 - Lx2 LINE L1 -781 5096 4837 2 1692 1496 37 21 11 chr4 145186215 145186405 -10443715 - B2_Mm1a SINE B2 0 193 2 2 1692 523 64 0 13 chr4 145186408 145186486 -10443634 - B1_Mur4 SINE Alu 0 150 50 2 1692 2371 149 21 18 chr4 145186532 145186968 -10443152 - BGLII_B LTR ERVK -1 440 4 2 1692 5797 241 76 46 chr4 145187069 145189635 -10440485 - MYSERV16_I-int LTR ERVK -113 2213 37 2 1692 399 100 300 0 chr4 145189635 145189705 -10440415 - B1_Mus1 SINE Alu -56 92 2 2 1692 1701 205 33 130 chr4 145189709 145190286 -10439834 - RMER6C LTR ERVK -81 609 89 2 1692 305 330 38 54 chr4 145190706 145190892 -10439228 - L1MEg LINE L1 -4596 1488 1306 2 1692 3042 68 109 7 chr4 145191316 145191747 -10438373 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1692 302 350 85 14 chr4 145192742 145193023 -10437097 - Lx8 LINE L1 -704 6769 6469 2 1692 384 370 43 34 chr4 145193061 145193623 -10436497 - L1M2 LINE L1 -1785 4358 3792 2 1692 216 167 0 0 chr4 145194187 145194235 -10435885 + (TATG)n Simple_repeat Simple_repeat 1 48 0 2 1692 21 36 0 0 chr4 145194693 145194721 -10435399 + AT_rich Low_complexity Low_complexity 1 28 0 2 1692 6060 174 42 12 chr4 145194728 145196074 -10434046 - Lx3B LINE L1 -54 6919 5530 2 1692 3700 39 5 0 chr4 145196074 145196508 -10433612 + RLTR10C LTR ERVK 1 436 0 2 1692 5704 150 8 11 chr4 145196508 145197178 -10432942 - Lx3B LINE L1 -357 5529 4857 2 1692 28 48 0 0 chr4 145197554 145197596 -10432524 + AT_rich Low_complexity Low_complexity 1 42 0 3 1692 232 355 74 17 chr4 145197840 145198015 -10432105 + Tigger1 DNA MER2_type 1940 2124 -294 3 1692 645 306 9 24 chr4 145198098 145198309 -10431811 + B3 SINE B2 9 216 0 3 1692 3546 18 0 0 chr4 145198891 145199287 -10430833 - MTA_Mm LTR MaLR 0 396 1 3 1692 9315 32 2 0 chr4 145199287 145200381 -10429739 - MTA_Mm-int LTR MaLR 0 1098 3 3 1692 3576 21 136 0 chr4 145200385 145200819 -10429301 - MT2_Mm LTR ERVL 0 493 1 3 1692 455 241 98 58 chr4 145201229 145201500 -10428620 - RLTR25B LTR ERVK 0 1028 626 3 1692 188 67 0 32 chr4 145201628 145201659 -10428461 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 1692 7158 129 79 69 chr4 145201662 145203511 -10426609 - Lx3A LINE L1 -6 6975 5109 3 1692 1146 88 0 0 chr4 145203511 145203659 -10426461 - B1_Mus1 SINE Alu 0 148 1 3 1692 7158 111 7 39 chr4 145203659 145204065 -10426055 - Lx3A LINE L1 -778 5108 4707 3 1692 2157 91 27 0 chr4 145204280 145204578 -10425542 + L1_Mus1 LINE L1 6249 6554 -13 3 1692 24 32 0 0 chr4 145204603 145204634 -10425486 + AT_rich Low_complexity Low_complexity 1 31 0 3 1692 226 239 43 29 chr4 145205656 145205725 -10424395 - Lx8 LINE L1 -764 6709 6640 3 1692 919 319 25 25 chr4 145205739 145206064 -10424056 - ORR1D2 LTR MaLR -3 367 43 3 1692 246 32 0 0 chr4 145206176 145206207 -10423913 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 1692 255 31 0 0 chr4 145206326 145206358 -10423762 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1692 281 348 86 30 chr4 145208954 145209292 -10420828 + Tigger1 DNA MER2_type 1720 2076 -342 3 1692 802 88 0 0 chr4 145209272 145209386 -10420734 - B2_Mm1t SINE B2 -6 187 74 3 1692 269 26 0 26 chr4 145210200 145210239 -10419881 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1692 951 68 29 36 chr4 145210239 145210377 -10419743 - B1_Mus2 SINE Alu -9 138 2 3 1692 240 331 22 8 chr4 145210467 145210601 -10419519 + MurSatRep1 Unknown Unknown 620 755 -1382 3 1692 2113 185 34 7 chr4 145211276 145211718 -10418402 - Lx2 LINE L1 -3 6994 6541 3 1692 421 148 57 0 chr4 145211718 145211806 -10418314 - Lx2 LINE L1 -578 6419 6327 3 1692 198 0 0 0 chr4 145212027 145212049 -10418071 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1692 1189 134 1 0 chr4 145212423 145214468 -10415652 + MMSAT4 Satellite Satellite 1 2045 0 3 1692 534 343 70 10 chr4 145215018 145215318 -10414802 + RMER15 LTR ERVL 241 558 -17 3 1692 338 288 48 9 chr4 145215382 145215487 -10414633 + URR1B DNA MER1_type 2 110 -115 3 1692 37 0 0 0 chr4 145217829 145217866 -10412254 + AT_rich Low_complexity Low_complexity 1 37 0 3 1692 6326 99 2 84 chr4 145217885 145219021 -10411099 - L1_Mus1 LINE L1 -60 6507 5409 3 1692 1041 36 22 0 chr4 145219021 145219158 -10410962 - B1_Mus1 SINE Alu 0 148 9 3 1692 6326 99 2 84 chr4 145219158 145219553 -10410567 - L1_Mus1 LINE L1 -60 5408 5025 3 1692 7667 87 5 15 chr4 145219552 145220720 -10409400 + L1_Mm LINE L1 3959 5115 -768 3 1692 1256 111 0 0 chr4 145220720 145220909 -10409211 + L1_Mm LINE L1 4860 5048 -835 3 1692 403 240 0 0 chr4 145220981 145221077 -10409043 - L1_Mur2 LINE L1 -1739 4138 4043 3 1692 5085 233 17 23 chr4 145221077 145222405 -10407715 - MYSERV6-int LTR ERVK -5092 3867 2548 3 1692 3165 42 0 16 chr4 145223753 145224116 -10406004 + IAPEY2_LTR LTR ERVK 1 357 0 3 1692 728 152 50 50 chr4 145224116 145224275 -10405845 + IAPLTR4_I LTR ERVK 22 180 -1290 3 1692 9156 126 17 39 chr4 145224274 145225766 -10404354 + IAPEY3-int LTR ERVK 524 1982 -5698 3 1692 3600 67 9 0 chr4 145225743 145226191 -10403929 + IAPEY3-int LTR ERVK 2238 2689 -4991 3 1692 194 368 44 0 chr4 145226206 145226320 -10403800 + L3b LINE CR1 335 453 -29 3 1692 2997 112 16 31 chr4 145226320 145226975 -10403145 + IAPEY3-int LTR ERVK 6984 7581 0 3 1692 3112 46 29 0 chr4 145226975 145227322 -10402798 + IAPEY2_LTR LTR ERVK 1 357 0 3 1693 273 29 0 0 chr4 145228667 145228701 -10401419 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1693 1180 72 0 0 chr4 145228704 145228843 -10401277 - B1_Mm SINE Alu -6 141 3 3 1693 1078 260 126 40 chr4 145229012 145229416 -10400704 - RMER10A LTR ERVL -3 439 1 3 1693 685 207 19 34 chr4 145229512 145229717 -10400403 + Lx2B LINE L1 6011 6212 -788 3 1693 682 133 38 30 chr4 145229717 145229849 -10400271 + ORR1A1 LTR MaLR 202 334 -12 3 1693 1745 26 0 0 chr4 145232878 145233067 -10397053 + B2_Mm1a SINE B2 2 190 -3 3 1693 755 154 0 0 chr4 145235283 145235406 -10394714 - Lx LINE L1 -619 6035 5913 3 1693 4039 123 15 5 chr4 145235406 145235996 -10394124 + Lx LINE L1 6043 6638 -16 3 1693 212 86 29 0 chr4 145236216 145236251 -10393869 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1693 5251 194 44 42 chr4 145237231 145238340 -10391780 - RLTR13D3 LTR ERVK 0 1114 4 3 1693 1165 105 12 0 chr4 145238541 145238712 -10391408 + B2_Mm2 SINE B2 4 176 -19 3 1693 713 242 86 6 chr4 145238717 145238879 -10391241 + B3 SINE B2 24 198 -18 3 1693 21 71 0 0 chr4 145238922 145238964 -10391156 + AT_rich Low_complexity Low_complexity 1 42 0 3 1693 191 312 61 44 chr4 145239336 145239450 -10390670 - L2a LINE L2 -6 3420 3305 3 1693 833 186 43 0 chr4 145239783 145239923 -10390197 + B1_Mur2 SINE Alu 2 147 -2 3 1693 180 0 0 0 chr4 145239924 145239944 -10390176 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1693 281 254 0 29 chr4 145240239 145240308 -10389812 - ID4_ SINE ID -14 69 3 3 1693 811 171 64 0 chr4 145240417 145240557 -10389563 + B1_Mur3 SINE Alu 1 149 0 3 1693 939 229 34 19 chr4 145240570 145240779 -10389341 - B3 SINE B2 -4 212 1 3 1693 205 278 59 49 chr4 145240782 145240884 -10389236 + MIR SINE MIR 125 227 -35 3 1693 637 296 19 37 chr4 145241029 145241243 -10388877 - ID_B1 SINE B4 -2 222 13 3 1693 914 223 34 34 chr4 145241285 145241494 -10388626 - B3 SINE B2 -7 209 1 3 1693 4596 204 181 42 chr4 145241735 145242718 -10387402 - L1_Mur2 LINE L1 -1062 4815 3823 3 1693 3185 192 11 33 chr4 145242718 145243332 -10386788 + MT2B LTR ERVL 1 601 0 3 1693 4596 204 181 42 chr4 145243332 145243346 -10386774 - L1_Mur2 LINE L1 -2055 3822 3814 3 1693 742 165 41 102 chr4 145243346 145243542 -10386578 - B2_Mm2 SINE B2 -9 186 3 3 1693 4596 204 181 42 chr4 145243542 145243682 -10386438 - L1_Mur2 LINE L1 -2064 3813 3463 3 1693 1212 82 0 0 chr4 145243682 145243829 -10386291 - B1_Mm SINE Alu 0 147 1 3 1693 4596 204 181 42 chr4 145243829 145244175 -10385945 - L1_Mur2 LINE L1 -2415 3462 3124 3 1693 525 273 48 12 chr4 145244206 145244373 -10385747 - Lx2B LINE L1 -6 6994 6822 3 1693 2603 151 18 18 chr4 145244490 145244928 -10385192 - BGLII_B LTR ERVK 0 441 4 3 1693 5856 240 89 55 chr4 145244997 145248524 -10381596 - MYSERV6-int LTR ERVK -1924 4626 30 3 1693 820 160 13 46 chr4 145248547 145248559 -10381561 - B1_Mus1 SINE Alu -1 147 138 3 1693 207 0 0 0 chr4 145248559 145248582 -10381538 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1693 820 160 13 46 chr4 145248582 145248720 -10381400 - B1_Mus1 SINE Alu -11 137 2 3 1693 1941 115 3 58 chr4 145248826 145249168 -10380952 - BGLII_B LTR ERVK -118 323 1 3 1693 5654 183 41 35 chr4 145249563 145250671 -10379449 - RLTR13D3 LTR ERVK 0 1114 1 3 1693 198 71 0 0 chr4 145251757 145251785 -10378335 + (TAA)n Simple_repeat Simple_repeat 3 30 0 3 1693 399 219 15 130 chr4 145252114 145252133 -10377987 + MT2B LTR ERVL 149 152 -449 3 1693 929 141 7 21 chr4 145252133 145252278 -10377842 + B1_Mus1 SINE Alu 1 143 -5 3 1693 1248 141 16 0 chr4 145252466 145252651 -10377469 + B2_Mm2 SINE B2 1 188 -7 3 1693 419 148 19 19 chr4 145254596 145254699 -10375421 + L1_Mur2 LINE L1 3662 3764 -2113 3 1693 394 281 17 9 chr4 145254697 145254812 -10375308 - Lx6 LINE L1 -24 7436 7321 3 1693 216 86 0 0 chr4 145254812 145254847 -10375273 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1693 285 313 36 0 chr4 145255174 145255257 -10374863 - RLTR18B LTR ERVK 0 512 427 3 1693 420 296 38 38 chr4 145255439 145255622 -10374498 - RMER21B LTR ERV1 -335 507 325 3 1693 1334 288 48 44 chr4 145255681 145256186 -10373934 - RLTR18 LTR ERVK -105 511 5 3 1693 2391 129 166 24 chr4 145256297 145256719 -10373401 - RLTR45 LTR ERVK 0 482 1 3 1693 264 280 0 62 chr4 145256790 145256870 -10373250 + B1_Mm SINE Alu 26 100 -47 3 1693 288 77 0 0 chr4 145257496 145257535 -10372585 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1693 1254 296 75 11 chr4 145257556 145257997 -10372123 - Lx6 LINE L1 -820 6640 6172 3 1693 1881 231 102 113 chr4 145258113 145258928 -10371192 + RLTR40 LTR ERVK 1 806 -11 3 1693 1296 58 0 0 chr4 145259385 145259559 -10370561 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 3 1693 244 237 26 0 chr4 145259662 145259738 -10370382 - L1_Mur3 LINE L1 -4451 1429 1352 3 1693 231 270 20 0 chr4 145260342 145260442 -10369678 + (CAAA)n Simple_repeat Simple_repeat 3 104 0 3 1693 612 0 0 0 chr4 145261450 145261518 -10368602 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 3 1693 222 91 0 0 chr4 145262119 145262152 -10367968 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1693 1162 51 36 0 chr4 145262161 145262299 -10367821 - B1_Mus1 SINE Alu -5 143 1 3 1693 715 336 91 13 chr4 145262852 145263304 -10366816 - Lx8 LINE L1 -519 6954 6468 3 1693 1632 231 35 23 chr4 145263599 145263997 -10366123 - RMER6A LTR ERVK 0 756 354 3 1693 240 196 0 0 chr4 145264197 145264243 -10365877 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 3 1693 246 284 141 7 chr4 145265428 145265570 -10364550 + RMER6C LTR ERVK 351 511 -179 3 1693 943 319 73 15 chr4 145266420 145266884 -10363236 - Lx8 LINE L1 -519 6954 6464 3 1693 3595 116 4 6 chr4 145267046 145267558 -10362562 + L1_Mus3 LINE L1 6128 6638 0 3 1693 1951 192 12 94 chr4 145267706 145267918 -10362202 - RMER6A LTR ERVK 0 756 580 3 1693 775 104 173 16 chr4 145267918 145268045 -10362075 - B1_Mus1 SINE Alu 0 148 2 3 1693 1951 226 45 83 chr4 145268045 145268649 -10361471 - RMER6A LTR ERVK -126 630 56 3 1693 306 250 12 0 chr4 145269143 145269223 -10360897 - L1MEg LINE L1 -4698 1386 1306 3 1693 491 313 87 9 chr4 145270665 145270894 -10359226 - Lx8 LINE L1 -739 6734 6488 3 1693 184 265 40 20 chr4 145271921 145271971 -10358149 - L2 LINE L2 -2587 832 782 3 1693 2566 105 6 9 chr4 145272044 145272390 -10357730 - IAPLTR4 LTR ERVK 0 345 1 3 1693 224 140 40 0 chr4 145272471 145272521 -10357599 + (TATG)n Simple_repeat Simple_repeat 1 52 0 4 1693 31 0 0 0 chr4 145272979 145273010 -10357110 + AT_rich Low_complexity Low_complexity 1 31 0 4 1693 7115 158 65 11 chr4 145273015 145274522 -10355598 - Lx3B LINE L1 -54 6919 5307 4 1693 3721 13 5 0 chr4 145274522 145274916 -10355204 + MTA_Mm LTR MaLR 1 396 0 4 1693 7115 143 3 8 chr4 145274916 145275512 -10354608 - Lx3B LINE L1 -580 5306 4715 4 1693 289 340 68 0 chr4 145275676 145275779 -10354341 - B1_Mur3 SINE Alu -37 112 3 4 1693 234 292 32 89 chr4 145275779 145275792 -10354328 - MT2B LTR ERVL -331 232 154 4 1693 635 260 19 112 chr4 145275800 145276067 -10354053 - RLTR25A LTR ERVK -531 572 331 4 1693 634 262 169 5 chr4 145276067 145276251 -10353869 - RMER17B LTR ERVK 0 958 745 4 1693 278 192 0 0 chr4 145276296 145276348 -10353772 - B3A SINE B2 -145 53 2 4 1693 1628 48 0 0 chr4 145276371 145276558 -10353562 - B2_Mm1a SINE B2 -5 188 2 4 1693 417 20 0 0 chr4 145277080 145277130 -10352990 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 4 1693 1054 82 8 0 chr4 145277132 145277266 -10352854 - B1_Mus2 SINE Alu -12 135 1 4 1693 853 317 74 24 chr4 145277994 145278333 -10351787 - ORR1D2 LTR MaLR -9 361 6 4 1693 415 293 15 29 chr4 145278441 145278578 -10351542 - B1_Mur2 SINE Alu -1 148 14 4 1693 339 169 0 0 chr4 145280280 145280351 -10349769 + GA-rich Low_complexity Low_complexity 3 73 0 4 1693 231 222 0 0 chr4 145280690 145280744 -10349376 + T-rich Low_complexity Low_complexity 4 57 0 4 1693 225 0 0 0 chr4 145282212 145282237 -10347883 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1693 405 299 113 0 chr4 145282444 145282638 -10347482 - B3 SINE B2 0 216 1 4 1693 4639 84 19 105 chr4 145283439 145284260 -10345860 - RMER17A LTR ERVK 0 751 1 4 1693 1124 82 0 7 chr4 145284350 145284497 -10345623 + B1_Mus1 SINE Alu 1 146 -2 4 1693 309 329 32 38 chr4 145288323 145288481 -10341639 - B3 SINE B2 0 216 60 4 1693 393 79 319 9 chr4 145288560 145288673 -10341447 - B2_Mm2 SINE B2 -1 194 47 4 1693 964 143 68 0 chr4 145288705 145288866 -10341254 - B2_Mm2 SINE B2 -22 173 2 4 1693 3521 173 15 29 chr4 145289936 145290620 -10339500 - Lx2 LINE L1 -6 6991 6318 4 1693 1231 135 4 5 chr4 145291185 145293637 -10336483 + MMSAT4 Satellite Satellite 1 2450 0 4 1693 294 347 50 77 chr4 145294106 145294365 -10335755 + RMER15 LTR ERVL 241 492 -83 4 1693 274 192 41 0 chr4 145294659 145294732 -10335388 + A-rich Low_complexity Low_complexity 3 78 0 4 1693 477 0 0 0 chr4 145294770 145294823 -10335297 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1693 4130 195 26 8 chr4 145297171 145298340 -10331780 - Lx2B LINE L1 -402 6598 5408 4 1693 452 232 7 7 chr4 145298341 145298480 -10331640 + L1_Mur1 LINE L1 3314 3452 -2434 4 1693 231 356 35 35 chr4 145299089 145299258 -10330862 - MLT1B LTR MaLR -105 285 117 4 1693 4923 137 26 5 chr4 145299438 145300230 -10329890 + RMER17D2 LTR ERVK 1 809 0 4 1693 513 0 0 0 chr4 145300564 145300621 -10329499 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1693 243 0 0 0 chr4 145301070 145301097 -10329023 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1693 197 33 33 0 chr4 145302303 145302333 -10327787 + (CATA)n Simple_repeat Simple_repeat 1 31 0 4 1693 756 246 80 25 chr4 145302406 145302606 -10327514 + B3 SINE B2 5 215 -1 4 1693 1823 62 4 0 chr4 145302615 145302855 -10327265 + L1Md_F2 LINE L1 5345 5585 -298 4 1693 7557 64 4 23 chr4 145302856 145303868 -10326252 + L1Md_F2 LINE L1 5587 6579 -3 4 1693 1010 110 7 0 chr4 145304012 145304157 -10325963 + B1_Mus1 SINE Alu 3 148 0 4 1693 255 21 41 41 chr4 145304167 145304216 -10325904 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1693 747 223 7 0 chr4 145304221 145304369 -10325751 + B1_Mur4 SINE Alu 1 149 -1 4 1693 21 36 0 0 chr4 145304383 145304411 -10325709 + AT_rich Low_complexity Low_complexity 1 28 0 4 1693 2237 161 13 13 chr4 145304804 145305182 -10324938 + ORR1C1 LTR MaLR 1 378 0 4 1693 2968 66 10 13 chr4 145306069 145306466 -10323654 - MTA_Mm LTR MaLR 0 396 1 4 1693 266 361 35 23 chr4 145307904 145308046 -10322074 - MIR3 SINE MIR -45 163 21 4 1693 1205 82 38 6 chr4 145308925 145309108 -10321012 + L1_Mus2 LINE L1 6378 6566 0 4 1693 468 51 0 0 chr4 145309185 145309244 -10320876 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1693 983 214 35 10 chr4 145309514 145309717 -10320403 + MTC LTR MaLR 214 421 0 4 1693 241 292 153 26 chr4 145310528 145310766 -10319354 - MLT1E2 LTR MaLR -230 275 1 4 1693 593 209 96 15 chr4 145311301 145311437 -10318683 - B1F SINE Alu -2 147 1 4 1693 1057 175 120 0 chr4 145311499 145311699 -10318421 - URR1A DNA MER1_type -2 224 1 4 1693 227 358 125 5 chr4 145311819 145312035 -10318085 + L3 LINE CR1 3790 4031 -458 4 1693 207 0 0 0 chr4 145312103 145312126 -10317994 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1693 360 0 0 0 chr4 145312126 145312165 -10317955 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1693 267 286 0 72 chr4 145312176 145312258 -10317862 - B4A SINE B4 -14 278 203 4 1693 1586 206 53 28 chr4 145312258 145312618 -10317502 - RLTR17 LTR ERVK 0 692 324 4 1693 1081 200 20 0 chr4 145312807 145313002 -10317118 + B3 SINE B2 2 200 -16 4 1693 207 0 0 0 chr4 145313002 145313025 -10317095 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 4 1693 483 69 0 0 chr4 145313157 145313229 -10316891 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1693 23 33 0 0 chr4 145313290 145313320 -10316800 + AT_rich Low_complexity Low_complexity 1 30 0 4 1693 334 200 53 0 chr4 145313840 145313915 -10316205 - Lx6 LINE L1 -1237 6223 6145 4 1693 540 0 0 0 chr4 145313921 145313981 -10316139 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1693 822 244 124 110 chr4 145314223 145314522 -10315598 - MTEb LTR MaLR 0 379 76 4 1693 3276 187 33 16 chr4 145314522 145315153 -10314967 - RLTR26 LTR ERVK 0 642 1 4 1693 320 206 103 0 chr4 145315153 145315216 -10314904 - MTEb LTR MaLR -305 74 5 4 1693 22 56 0 0 chr4 145315918 145315954 -10314166 + AT_rich Low_complexity Low_complexity 1 36 0 4 1693 2904 226 90 11 chr4 145315956 145316693 -10313427 + Lx9 LINE L1 6536 7330 -314 4 1693 284 158 35 17 chr4 145316693 145316751 -10313369 - RLTR26 LTR ERVK -316 326 268 4 1693 265 208 125 0 chr4 145316753 145316825 -10313295 + Lx9 LINE L1 7345 7425 -219 4 1693 395 19 19 0 chr4 145317189 145317241 -10312879 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 1693 1033 109 17 0 chr4 145317590 145317765 -10312355 + (CATA)n Simple_repeat Simple_repeat 2 179 0 4 1693 209 108 27 0 chr4 145318304 145318341 -10311779 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 4 1693 639 26 0 0 chr4 145318402 145318479 -10311641 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1693 1892 197 54 3 chr4 145318552 145318943 -10311177 - Lx6 LINE L1 -983 6477 6067 4 1693 776 180 80 6 chr4 145318960 145319122 -10310998 - Lx6 LINE L1 -1511 5949 5776 4 1693 24 53 0 0 chr4 145319125 145319163 -10310957 + AT_rich Low_complexity Low_complexity 1 38 0 4 1693 335 184 0 11 chr4 145319482 145319570 -10310550 + CT-rich Low_complexity Low_complexity 2 88 0 4 1693 4290 175 23 18 chr4 145320273 145321171 -10308949 - Lx6 LINE L1 -85 5795 4893 4 1693 4148 66 13 13 chr4 145322027 145322578 -10307542 + L1_Mus1 LINE L1 6017 6567 0 4 1693 14291 146 81 21 chr4 145322664 145326701 -10303419 - Lx4B LINE L1 -19 7039 2744 4 1693 13249 94 19 4 chr4 145326703 145328654 -10301466 + L1VL4 LINE L1 36 2019 -1540 4 1693 2858 41 6 0 chr4 145328654 145328998 -10301122 - ORR1A0 LTR MaLR 0 346 1 4 1693 13249 74 13 4 chr4 145328998 145329813 -10300307 + L1VL4 LINE L1 2020 2841 -718 4 1693 1230 205 75 4 chr4 145329813 145330078 -10300042 - ORR1C1 LTR MaLR -94 284 1 4 1693 1829 238 33 0 chr4 145330550 145330945 -10299175 + MT2A LTR ERVL 3 410 -123 4 1693 270 0 0 0 chr4 145331093 145331123 -10298997 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1693 742 82 0 0 chr4 145331123 145331220 -10298900 - B1_Mus2 SINE Alu -10 137 41 4 1693 396 252 8 56 chr4 145331220 145331249 -10298871 - ID_B1 SINE B4 -10 214 95 4 1693 731 283 85 100 chr4 145331605 145331765 -10298355 + ORR1D2 LTR MaLR 3 143 -227 4 1693 1647 31 0 0 chr4 145331765 145331956 -10298164 - B2_Mm1t SINE B2 -1 192 2 4 1693 731 283 85 100 chr4 145331956 145332136 -10297984 + ORR1D2 LTR MaLR 144 338 -32 4 1693 241 268 18 0 chr4 145332147 145332203 -10297917 - ORR1D1 LTR MaLR -317 57 1 4 1693 1919 238 63 6 chr4 145332373 145332868 -10297252 + ORR1D2-int LTR MaLR 11 533 -837 4 1693 564 200 62 19 chr4 145332875 145333061 -10297059 + B3 SINE B2 1 195 0 4 1693 553 239 0 0 chr4 145333072 145333185 -10296935 + ORR1D2-int LTR MaLR 535 647 -723 4 1693 1057 231 163 6 chr4 145333213 145333435 -10296685 + ORR1D2 LTR MaLR 5 273 -97 4 1693 2057 165 41 16 chr4 145333435 145333798 -10296322 - ORR1D1 LTR MaLR -2 372 1 4 1693 1057 231 163 6 chr4 145333798 145333888 -10296232 + ORR1D2 LTR MaLR 274 366 -4 4 1693 1699 138 65 144 chr4 145334298 145334695 -10295425 - ORR1B1 LTR MaLR 0 394 29 4 1693 785 242 6 0 chr4 145334697 145334862 -10295258 + Lx6 LINE L1 6477 6642 -818 4 1693 229 208 0 0 chr4 145334862 145334910 -10295210 + Lx6 LINE L1 6953 7000 -460 4 1693 29 60 0 0 chr4 145335411 145335461 -10294659 + GC_rich Low_complexity Low_complexity 1 50 0 4 1693 1359 58 87 0 chr4 145336135 145336293 -10293827 + B2_Mm1a SINE B2 2 160 -33 4 1693 351 0 0 0 chr4 145336293 145336332 -10293788 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1693 1359 58 87 0 chr4 145336332 145336346 -10293774 + B2_Mm1a SINE B2 161 187 -6 4 1693 186 43 0 0 chr4 145338302 145338325 -10291795 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 4 1693 1220 83 0 0 chr4 145338338 145338495 -10291625 + B2_Mm2 SINE B2 5 161 -34 4 1693 333 0 0 0 chr4 145338495 145338532 -10291588 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1693 2926 221 35 37 chr4 145338538 145339101 -10291019 + Lx7 LINE L1 6990 7543 -153 4 1693 519 95 0 0 chr4 145339101 145339175 -10290945 + (CAATA)n Simple_repeat Simple_repeat 2 75 0 4 1693 2926 221 35 37 chr4 145339175 145339319 -10290801 + Lx7 LINE L1 7544 7696 0 4 1693 1081 257 120 6 chr4 145339334 145339667 -10290453 + MTD LTR MaLR 1 371 -48 4 1693 578 143 0 8 chr4 145339694 145339828 -10290292 + CT-rich Low_complexity Low_complexity 1 133 0 4 1693 755 196 35 7 chr4 145340334 145340478 -10289642 + B1_Mur3 SINE Alu 1 148 -1 5 1693 346 284 8 65 chr4 145340490 145340614 -10289506 + RMER5 LTR ERV1 14 130 -404 5 1693 340 161 0 16 chr4 145340619 145340682 -10289438 - RMER1A Other Other -917 113 52 5 1693 2252 188 99 2 chr4 145340844 145341318 -10288802 - RMER5 LTR ERV1 0 534 15 5 1693 1246 48 7 0 chr4 145341375 145341520 -10288600 - B1_Mus2 SINE Alu 0 147 2 5 1693 201 163 40 20 chr4 145343400 145343450 -10286670 + CT-rich Low_complexity Low_complexity 4 54 0 5 1693 2075 236 48 21 chr4 145343624 145343642 -10286478 - RMER5 LTR ERV1 0 534 521 5 1693 1372 63 69 0 chr4 145343642 145343816 -10286304 + B2_Mm2 SINE B2 4 189 -6 5 1693 2075 236 48 21 chr4 145343816 145344317 -10285803 - RMER5 LTR ERV1 -14 520 1 5 1693 216 0 0 0 chr4 145344558 145344582 -10285538 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1693 1584 60 0 11 chr4 145345000 145345186 -10284934 + B2_Mm1t SINE B2 2 185 -8 5 1693 1254 233 211 75 chr4 145345909 145345992 -10284128 + MT2A LTR ERVL 1 81 -452 5 1693 399 41 0 0 chr4 145345992 145346041 -10284079 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 5 1693 1254 233 211 75 chr4 145346041 145346152 -10283968 + MT2A LTR ERVL 82 177 -356 5 1693 342 0 0 0 chr4 145346152 145346190 -10283930 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1693 1254 233 211 75 chr4 145346190 145346463 -10283657 + MT2A LTR ERVL 178 531 -2 5 1693 2961 39 2 151 chr4 145346578 145347036 -10283084 + RLTR10 LTR ERVK 1 390 0 5 1693 15223 29 35 67 chr4 145347046 145349055 -10281065 + RLTR10-int LTR ERVK 41 1984 -3 5 1693 2961 39 2 151 chr4 145349057 145349515 -10280605 + RLTR10 LTR ERVK 1 390 0 5 1693 15223 29 35 67 chr4 145349525 145351534 -10278586 + RLTR10-int LTR ERVK 41 1984 -3 5 1693 2881 41 2 154 chr4 145351536 145351996 -10278124 + RLTR10 LTR ERVK 1 390 0 5 1693 1273 228 19 11 chr4 145352124 145352390 -10277730 + RMER5 LTR ERV1 23 290 -244 5 1693 2353 105 6 12 chr4 145352443 145352772 -10277348 - ORR1A4 LTR MaLR -2 327 1 5 1693 410 271 88 31 chr4 145352792 145353020 -10277100 - RMER17C LTR ERVK -47 363 123 5 1693 521 117 0 0 chr4 145353153 145353230 -10276890 + RMER5 LTR ERV1 458 534 0 5 1693 992 184 122 15 chr4 145353915 145354057 -10276063 + URR1A DNA MER1_type 1 167 -59 5 1693 3403 61 2 2 chr4 145354057 145354453 -10275667 - MTA_Mm LTR MaLR 0 396 1 5 1693 992 184 122 15 chr4 145354453 145354514 -10275606 + URR1A DNA MER1_type 168 226 0 5 1693 1098 198 14 19 chr4 145354579 145354790 -10275330 + Lx5 LINE L1 6841 7050 0 5 1693 869 124 7 0 chr4 145354963 145354976 -10275144 + (TTTC)n Simple_repeat Simple_repeat 1 13 0 5 1693 1692 37 21 0 chr4 145354976 145355165 -10274955 - B2_Mm1t SINE B2 0 193 1 5 1693 869 124 7 0 chr4 145355165 145355296 -10274824 + (TTTC)n Simple_repeat Simple_repeat 1 132 0 5 1693 655 80 0 0 chr4 145355607 145355695 -10274425 + Lx2 LINE L1 6556 6643 -354 5 1693 1265 131 82 0 chr4 145355695 145355901 -10274219 + Lx2 LINE L1 6775 6997 0 5 1693 513 0 0 0 chr4 145356026 145356083 -10274037 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1693 1254 142 243 25 chr4 145357076 145357514 -10272606 + RMER5 LTR ERV1 1 533 -1 5 1693 5519 116 3 18 chr4 145357905 145358759 -10271361 - L1_Mur1 LINE L1 -366 5520 4679 5 211 9615 153 3 68 chr4 145358761 145359010 -10271110 + L1_Mur1 LINE L1 3066 3277 -2609 5 1694 1324 34 0 0 chr4 145359010 145359157 -10270963 + B1_Mm SINE Alu 1 147 0 5 1694 9615 97 3 51 chr4 145359157 145360383 -10269737 + L1_Mur1 LINE L1 3278 4458 -1428 5 1694 1097 85 18 18 chr4 145360383 145360551 -10269569 + L1_Mus3 LINE L1 6469 6636 -2 5 1694 9615 97 3 51 chr4 145360551 145360793 -10269327 + L1_Mur1 LINE L1 4459 4675 -1211 5 1694 329 270 16 23 chr4 145360853 145360982 -10269138 - L1_Rod LINE L1 -36 5811 5684 5 1694 1538 169 22 0 chr4 145360978 145361251 -10268869 - Lx3B LINE L1 -519 6454 6176 5 1694 4236 143 30 9 chr4 145361243 145362120 -10268000 - Lx4A LINE L1 -750 6308 5409 5 1694 2733 165 12 16 chr4 145362131 145362593 -10267527 + L1_Mur2 LINE L1 4815 5280 -597 5 1694 1768 122 33 66 chr4 145362593 145362926 -10267194 - RLTRETN_Mm LTR ERVK 0 322 1 5 1694 2733 165 12 16 chr4 145362926 145362975 -10267145 + L1_Mur2 LINE L1 5281 5324 -553 5 1694 562 288 43 25 chr4 145362989 145363194 -10266926 - RMER1A Other Other -845 185 19 5 1694 1314 96 11 0 chr4 145363194 145363382 -10266738 - BGLII LTR ERVK -231 190 1 5 1694 1531 234 27 36 chr4 145363383 145363857 -10266263 - RMER3D-int LTR ERVK -1 2841 2372 5 1694 1336 34 0 0 chr4 145363863 145364010 -10266110 - B1_Mus2 SINE Alu 0 147 1 5 1694 520 73 12 0 chr4 145364016 145364098 -10266022 - L1Md_F3 LINE L1 -2 6582 6500 5 1694 25 51 0 0 chr4 145364342 145364381 -10265739 + GC_rich Low_complexity Low_complexity 1 39 0 5 1694 208 49 73 0 chr4 145365280 145365321 -10264799 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1694 1174 89 0 0 chr4 145365325 145365471 -10264649 - B1_Mm SINE Alu 0 147 2 5 1694 1075 116 0 13 chr4 145365912 145366061 -10264059 - B1_Mm SINE Alu 0 147 1 5 1694 252 315 41 0 chr4 145366358 145366431 -10263689 - RLTR18B LTR ERVK -5 507 432 5 1694 1306 314 73 35 chr4 145366796 145367388 -10262732 - RLTR18 LTR ERVK -2 614 1 5 1694 296 244 4 71 chr4 145367563 145367654 -10262466 + B1_Mm SINE Alu 27 116 -33 5 1694 1337 306 64 2 chr4 145368291 145368727 -10261393 - Lx6 LINE L1 -826 6634 6172 5 1694 2341 216 82 72 chr4 145368858 145369625 -10260495 + RLTR40 LTR ERVK 1 775 -42 5 1694 1346 57 0 9 chr4 145370096 145370313 -10259807 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 5 1694 245 209 22 65 chr4 145370414 145370506 -10259614 - L1_Mur3 LINE L1 -4451 1429 1342 5 1694 21 0 0 0 chr4 145370579 145370600 -10259520 + AT_rich Low_complexity Low_complexity 1 21 0 5 1694 780 59 0 0 chr4 145371132 145371234 -10258886 + (CAAG)n Simple_repeat Simple_repeat 2 103 0 5 1694 2300 153 104 130 chr4 145372156 145372733 -10257387 - LTRIS2 LTR ERV1 0 564 3 5 1694 642 331 108 14 chr4 145374223 145374594 -10255526 - Lx8 LINE L1 -602 6871 6466 5 1694 1247 55 0 0 chr4 145374889 145375035 -10255085 - B1_Mm SINE Alu 0 147 2 5 1694 2558 231 20 109 chr4 145375061 145375828 -10254292 - RMER6A LTR ERVK -2 754 57 5 1694 1095 110 0 20 chr4 145376287 145376436 -10253684 - B1_Mus1 SINE Alu -2 146 1 5 1694 249 267 0 0 chr4 145376523 145376583 -10253537 - L1MDa LINE L1 -4739 1894 1835 5 1694 706 66 189 0 chr4 145377796 145377918 -10252202 - B2_Mm2 SINE B2 -1 194 50 5 1694 300 137 0 0 chr4 145378707 145378758 -10251362 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1694 240 111 0 0 chr4 145378802 145378838 -10251282 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1694 216 97 0 0 chr4 145379403 145379434 -10250686 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1694 14698 138 38 38 chr4 145379802 145381074 -10249046 - Lx2 LINE L1 -374 6623 5282 5 1694 6089 115 6 1 chr4 145381074 145381920 -10248200 - L1_Mus3 LINE L1 -6 6632 5783 5 1694 14698 130 30 76 chr4 145381920 145381949 -10248171 - Lx2 LINE L1 -602 5281 5254 5 1694 1129 97 0 7 chr4 145381949 145382094 -10248026 - B1_Mus2 SINE Alu -1 146 3 5 1694 14698 130 30 76 chr4 145382094 145382232 -10247888 - Lx2 LINE L1 -630 5253 5122 5 1694 213 39 0 0 chr4 145382232 145382258 -10247862 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 5 1694 1218 63 6 0 chr4 145382258 145382416 -10247704 - B2_Mm1t SINE B2 -33 160 2 5 1694 14698 130 30 76 chr4 145382416 145384381 -10245739 - Lx2 LINE L1 -762 5121 3156 5 1694 899 306 106 30 chr4 145384450 145384851 -10245269 - RLTR18 LTR ERVK -85 531 102 5 1694 249 33 0 0 chr4 145384851 145384881 -10245239 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1694 899 307 97 60 chr4 145384881 145384936 -10245184 - RLTR18 LTR ERVK -408 104 45 5 1694 222 37 0 0 chr4 145384936 145384963 -10245157 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1694 1077 78 0 48 chr4 145384966 145385113 -10245007 - B1_Mm SINE Alu -6 141 2 5 1694 303 309 83 104 chr4 145385113 145385155 -10244965 - RLTR18 LTR ERVK -468 44 2 5 1694 1156 317 11 3 chr4 145385430 145385794 -10244326 - Lx6 LINE L1 -826 6634 6268 5 1694 295 200 57 0 chr4 145385989 145386059 -10244061 + RLTR40 LTR ERVK 1 74 -743 5 1694 907 222 47 39 chr4 145386053 145386426 -10243694 + RLTR40 LTR ERVK 447 775 -42 5 1694 249 222 0 0 chr4 145386904 145386967 -10243153 + T-rich Low_complexity Low_complexity 1 63 0 5 1694 263 187 31 62 chr4 145387057 145387154 -10242966 - L1_Mur3 LINE L1 -4451 1429 1336 5 1694 238 62 62 0 chr4 145387191 145387239 -10242881 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1694 243 88 0 0 chr4 145387815 145387849 -10242271 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 5 1694 27 49 0 0 chr4 145388336 145388377 -10241743 + AT_rich Low_complexity Low_complexity 1 41 0 5 1694 239 72 0 23 chr4 145390695 145390738 -10239382 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 5 1694 1252 55 7 0 chr4 145390756 145390901 -10239219 - B1_Mm SINE Alu -1 146 1 5 1694 481 293 96 36 chr4 145390902 145391153 -10238967 - Lx8 LINE L1 -739 6734 6469 5 1694 372 375 50 29 chr4 145391191 145391746 -10238374 - L1M2 LINE L1 -1785 4358 3792 5 1694 262 264 0 27 chr4 145392339 145392413 -10237707 + (TATG)n Simple_repeat Simple_repeat 1 72 0 5 1694 8603 164 31 8 chr4 145392911 145395303 -10234817 - Lx3A LINE L1 -53 6928 4472 5 1694 232 308 0 0 chr4 145395437 145395471 -10234649 - ORR1A3-int LTR MaLR -1096 867 752 5 1694 289 350 48 0 chr4 145395471 145395574 -10234546 - B1_Mm SINE Alu -37 110 3 5 1694 856 209 19 118 chr4 145395598 145395869 -10234251 - RLTR25B LTR ERVK -531 572 329 5 1694 2895 230 47 8 chr4 145395871 145396512 -10233608 - RMER17B LTR ERVK -4 954 289 5 1694 1706 132 64 4 chr4 145397244 145397525 -10232595 - RMER17B LTR ERVK -660 298 1 5 1694 1048 227 13 114 chr4 145397556 145397864 -10232256 - RLTR25B LTR ERVK -697 331 55 5 1694 278 192 0 0 chr4 145398071 145398123 -10231997 - B3A SINE B2 -145 53 2 5 1694 1170 280 41 32 chr4 145399384 145399724 -10230396 + MTEb LTR MaLR 1 343 -36 5 1694 212 0 36 0 chr4 145399731 145399759 -10230361 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 5 1694 399 306 88 8 chr4 145399793 145399918 -10230202 - RSINE1 SINE B4 -28 137 3 5 1694 389 294 155 32 chr4 145400113 145400391 -10229729 - MLT1B LTR MaLR -19 371 60 5 1694 1120 200 43 0 chr4 145400465 145400675 -10229445 + RLTR20D LTR ERVK 1 219 -349 5 1694 514 223 19 0 chr4 145400682 145400785 -10229335 - B1_Mur3 SINE Alu -14 135 31 5 1694 218 276 12 84 chr4 145401262 145401279 -10228841 + B4 SINE B4 70 80 -212 5 1694 308 228 31 44 chr4 145401279 145401377 -10228743 + PB1D7 SINE Alu 1 93 -27 5 1694 200 132 26 0 chr4 145401377 145401415 -10228705 + A-rich Low_complexity Low_complexity 1 39 0 6 1694 246 231 31 0 chr4 145401573 145401638 -10228482 + L1M3 LINE L1 5821 5887 -296 6 1694 330 294 40 13 chr4 145401662 145401791 -10228329 - B2_Mm2 SINE B2 -85 131 1 6 1694 3875 152 20 2 chr4 145402438 145403049 -10227071 - Lx LINE L1 -8 6646 6025 6 1694 445 281 7 41 chr4 145403218 145403363 -10226757 - B1_Mur1 SINE Alu 0 149 10 6 1694 229 303 54 150 chr4 145403223 145403390 -10226730 - B4 SINE B4 -69 223 73 6 1694 21 0 0 0 chr4 145403478 145403499 -10226621 + AT_rich Low_complexity Low_complexity 1 21 0 6 1694 282 338 0 0 chr4 145403664 145403741 -10226379 + B3 SINE B2 7 83 -133 6 1694 1089 98 12 30 chr4 145404130 145404299 -10225821 - L1Md_F2 LINE L1 0 6582 6417 6 1694 872 202 9 69 chr4 145404922 145405140 -10224980 - RMER10B LTR ERVL 0 398 194 6 1694 562 219 57 4 chr4 145405178 145405403 -10224717 + RMER6A LTR ERVK 519 751 -5 6 1694 1466 176 270 38 chr4 145405761 145406135 -10223985 + RMER6B LTR ERVK 1 461 0 6 1694 2236 221 101 65 chr4 145406355 145406894 -10223226 + RLTR40 LTR ERVK 29 584 -233 6 1694 351 0 0 0 chr4 145406894 145406933 -10223187 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1694 495 0 0 0 chr4 145406933 145406987 -10223133 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1694 2236 221 101 65 chr4 145406987 145407198 -10222922 + RLTR40 LTR ERVK 585 806 -11 6 1694 198 0 0 0 chr4 145407236 145407258 -10222862 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1694 238 222 32 0 chr4 145408470 145408533 -10221587 + (CAAG)n Simple_repeat Simple_repeat 2 66 0 6 1694 673 227 253 48 chr4 145409828 145410134 -10219986 - RMER17C-int LTR ERVK -2868 370 2 6 1694 1970 175 21 52 chr4 145410136 145410559 -10219561 - RMER17C LTR ERVK 0 410 1 6 1694 863 321 105 5 chr4 145410659 145411106 -10219014 - Lx8 LINE L1 -518 6955 6464 6 1694 1092 167 5 0 chr4 145411254 145411440 -10218680 - RMER6A LTR ERVK 0 756 570 6 1694 804 105 15 8 chr4 145411447 145411581 -10218539 - L1_Mus3 LINE L1 0 6638 6504 6 1694 287 271 128 106 chr4 145412374 145412609 -10217511 - RLTR13D3 LTR ERVK -874 240 1 6 1694 1526 297 24 20 chr4 145412694 145413455 -10216665 - MMTV-int LTR ERVK -83 7170 6484 6 1694 418 265 8 25 chr4 145413691 145413811 -10216309 - RLTR25A LTR ERVK -303 800 683 6 1694 408 125 0 0 chr4 145413900 145413964 -10216156 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 6 1694 3153 156 33 4 chr4 145413965 145414474 -10215646 - Lx3A LINE L1 -7 6974 6451 6 1694 311 175 0 17 chr4 145414490 145414548 -10215572 + Lx3A LINE L1 6078 6134 -847 6 1694 2209 89 184 16 chr4 145415432 145415808 -10214312 - RLTR44E LTR ERVK -13 439 1 6 1694 883 93 0 0 chr4 145415847 145415965 -10214155 - B1_Mus2 SINE Alu -29 118 1 6 1694 429 214 24 97 chr4 145415863 145415987 -10214133 - MT2B LTR ERVL -344 257 143 6 1694 238 320 19 19 chr4 145416039 145416144 -10213976 + MurSatRep1 Unknown Unknown 641 745 -1392 6 1694 2304 205 9 2 chr4 145416823 145417277 -10212843 - Lx2 LINE L1 0 6997 6541 6 1694 428 171 11 0 chr4 145417277 145417365 -10212755 - Lx2 LINE L1 -578 6419 6331 6 1694 1356 137 26 9 chr4 145417868 145419408 -10210712 + MMSAT4 Satellite Satellite 1 1566 0 6 1694 254 381 10 0 chr4 145419877 145419974 -10210146 + RMER15 LTR ERVL 241 338 -237 6 1694 2015 146 10 10 chr4 145420668 145420979 -10209141 - RLTR10E LTR ERVK 0 311 1 6 1694 1664 107 4 0 chr4 145420979 145421204 -10208916 - MMERVK10C-int LTR ERVK 0 7581 7356 6 1694 359 322 43 11 chr4 145421770 145421955 -10208165 - SRV_MM-int LTR ERVK -899 5268 5078 6 1694 831 257 10 26 chr4 145421946 145422138 -10207982 - ETnERV2-int LTR ERVK -2091 5315 5127 6 1694 1873 236 44 46 chr4 145422209 145422250 -10207870 - ETnERV2-int LTR ERVK -2872 4534 4505 6 1694 1710 16 22 0 chr4 145422250 145422433 -10207687 + B2_Mm1a SINE B2 2 188 -5 6 1694 1873 269 45 45 chr4 145422433 145423106 -10207014 - ETnERV2-int LTR ERVK -2902 4504 4083 6 1694 2584 173 27 28 chr4 145423128 145423718 -10206402 - RMER16-int LTR ERVK -2567 2839 2303 6 1694 4505 211 30 40 chr4 145423710 145423855 -10206265 - ETnERV2-int LTR ERVK -4656 2750 2601 6 1694 1423 92 11 0 chr4 145423855 145424040 -10206080 + B2_Mm1t SINE B2 2 188 -5 6 1694 4505 211 30 40 chr4 145424040 145424928 -10205192 - ETnERV2-int LTR ERVK -4806 2600 1727 6 1694 2292 162 134 39 chr4 145424936 145425451 -10204669 - ETnERV2-int LTR ERVK -4587 819 256 6 1694 189 0 0 0 chr4 145425628 145425649 -10204471 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1694 25 0 0 0 chr4 145425741 145425766 -10204354 + AT_rich Low_complexity Low_complexity 1 25 0 6 1694 257 171 0 0 chr4 145425813 145425854 -10204266 - ETnERV2-int LTR ERVK -7948 269 229 6 1694 1136 243 123 37 chr4 145429992 145430398 -10199722 - RMER10A LTR ERVL -1 441 1 6 1694 718 217 20 15 chr4 145430490 145430691 -10199429 + Lx2B LINE L1 6011 6212 -788 6 1694 684 165 14 36 chr4 145430691 145430829 -10199291 + ORR1A3 LTR MaLR 183 317 -9 6 1694 21 0 0 56 chr4 145431584 145431600 -10198520 + AT_rich Low_complexity Low_complexity 1 15 0 6 1694 1224 68 0 7 chr4 145431600 145431748 -10198372 + B1_Mus2 SINE Alu 1 147 0 6 1694 21 0 0 56 chr4 145431748 145431767 -10198353 + AT_rich Low_complexity Low_complexity 1 19 0 6 1694 682 131 8 62 chr4 145431932 145431948 -10198172 - Lx LINE L1 -619 6035 6023 6 1694 8138 37 38 1 chr4 145431948 145432872 -10197248 + RLTR13A2 LTR ERVK 1 958 0 6 1694 682 131 8 62 chr4 145432872 145432985 -10197135 - Lx LINE L1 -632 6022 5913 6 1694 3908 133 13 12 chr4 145432985 145433580 -10196540 + Lx LINE L1 6043 6638 -16 6 1694 459 35 0 0 chr4 145433799 145433856 -10196264 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1694 5729 182 46 46 chr4 145434834 145435948 -10194172 - RLTR13D3 LTR ERVK 0 1114 1 6 1694 644 264 87 11 chr4 145436121 145436142 -10193978 + B3 SINE B2 1 23 -193 6 1694 1291 111 33 0 chr4 145436142 145436322 -10193798 + B2_Mm2 SINE B2 5 190 -5 6 1694 644 264 87 11 chr4 145436322 145436484 -10193636 + B3 SINE B2 24 198 -18 6 1694 235 236 18 30 chr4 145436758 145436924 -10193196 + (TG)n Simple_repeat Simple_repeat 1 164 0 6 1694 1039 153 0 6 chr4 145437025 145437196 -10192924 + B2_Mm2 SINE B2 2 171 -24 6 1694 427 293 122 33 chr4 145437344 145437524 -10192596 + B3A SINE B2 3 198 0 6 1694 358 288 36 9 chr4 145437800 145437912 -10192208 + PB1D10 SINE Alu 1 115 -2 6 1694 1123 197 40 0 chr4 145437912 145438110 -10192010 + B3 SINE B2 1 206 -10 6 1694 522 215 47 45 chr4 145438258 145438431 -10191689 + B3A SINE B2 1 176 -19 6 1694 264 111 0 0 chr4 145439706 145439751 -10190369 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 6 1694 279 312 62 12 chr4 145439773 145439854 -10190266 - B1F2 SINE Alu -64 85 1 6 1694 21 71 0 0 chr4 145439944 145439986 -10190134 + AT_rich Low_complexity Low_complexity 1 42 0 6 1694 1272 61 0 0 chr4 145440023 145440170 -10189950 - B1_Mm SINE Alu 0 147 1 6 1694 1121 53 68 0 chr4 145440512 145440644 -10189476 + B1_Mm SINE Alu 2 142 -5 6 1694 724 231 14 0 chr4 145440962 145441105 -10189015 + B1_Mus1 SINE Alu 2 146 -2 6 1694 311 349 8 15 chr4 145441948 145442079 -10188041 - RMER15 LTR ERVL -151 424 295 6 1694 229 329 0 0 chr4 145442084 145442157 -10187963 + MTE2b LTR MaLR 3 75 -304 6 1694 645 289 101 11 chr4 145442218 145442407 -10187713 + MT2A LTR ERVL 183 388 -145 6 1694 240 149 0 0 chr4 145443011 145443058 -10187062 + (TCC)n Simple_repeat Simple_repeat 2 48 0 6 1694 7468 39 0 4 chr4 145443626 145444451 -10185669 - RLTR13B2 LTR ERVK 0 822 1 6 1694 195 186 0 0 chr4 145444461 145444504 -10185616 + T-rich Low_complexity Low_complexity 1 43 0 6 1694 1137 88 0 0 chr4 145444507 145444654 -10185466 - B1_Mus1 SINE Alu 0 148 2 6 1694 1378 79 11 5 chr4 145445859 145446050 -10184070 - B2_Mm1t SINE B2 0 193 2 6 1694 360 223 31 2 chr4 145446816 145446914 -10183206 - Lx2B LINE L1 -101 6907 6804 6 1694 2431 147 18 18 chr4 145447023 145447460 -10182660 - BGLII_B LTR ERVK -1 440 4 6 1694 3092 205 58 33 chr4 145447528 145448436 -10181684 - MYSERV16_I-int LTR ERVK -78 2248 1316 6 1694 1657 31 0 0 chr4 145448436 145448629 -10181491 - B2_Mm1a SINE B2 0 193 1 6 1694 3092 205 58 33 chr4 145448629 145448683 -10181437 - MYSERV16_I-int LTR ERVK -1011 1315 1262 6 1694 236 276 8 103 chr4 145448726 145448843 -10181277 - RMER4A LTR ERVK -53 413 308 6 1694 4770 226 29 35 chr4 145448847 145450032 -10180088 - MYSERV6-int LTR ERVK -4657 4302 3125 6 1694 875 146 14 14 chr4 145450032 145450178 -10179942 - B1_Mus1 SINE Alu -1 147 2 6 1694 4770 226 29 35 chr4 145450178 145450288 -10179832 - MYSERV6-int LTR ERVK -5835 3124 3016 6 1694 1771 136 0 57 chr4 145450295 145450630 -10179490 - BGLII_B LTR ERVK -125 316 1 6 1694 872 177 0 0 chr4 145451017 145451158 -10178962 - RLTR13C1 LTR ERVK 0 983 843 6 1694 21 0 0 0 chr4 145451244 145451265 -10178855 + AT_rich Low_complexity Low_complexity 1 21 0 6 1694 1888 237 99 110 chr4 145451342 145452157 -10177963 + RLTR40 LTR ERVK 1 806 -11 6 1694 782 48 10 0 chr4 145452629 145452732 -10177388 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 6 1694 186 118 0 0 chr4 145453543 145453577 -10176543 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 6 1694 1667 16 0 20 chr4 145453686 145453883 -10176237 + B2_Mm1t SINE B2 1 193 0 6 1694 4216 16 12 8 chr4 145454721 145455212 -10174908 + MT2_Mm LTR ERVL 1 493 0 6 1694 200 35 35 0 chr4 145455339 145455368 -10174752 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 6 1694 1137 88 0 0 chr4 145455995 145456143 -10173977 - B1_Mus1 SINE Alu 0 148 1 6 1694 2644 32 35 0 chr4 145456250 145456564 -10173556 - IAPLTR2b LTR ERVK -2 325 1 6 1694 496 334 109 22 chr4 145457015 145457465 -10172655 - Lx8 LINE L1 -519 6954 6466 6 1694 1558 238 55 3 chr4 145457763 145457909 -10172211 - RMER6A LTR ERVK 0 756 608 6 1694 1083 93 0 0 chr4 145457909 145458048 -10172072 - B1_Mus2 SINE Alu -7 140 2 6 1694 1558 238 55 3 chr4 145458048 145458284 -10171836 - RMER6A LTR ERVK -149 607 355 6 1694 204 214 0 0 chr4 145458484 145458526 -10171594 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 6 1694 844 315 73 15 chr4 145460690 145461154 -10168966 - Lx8 LINE L1 -519 6954 6464 6 1694 3236 135 12 6 chr4 145461316 145461824 -10168296 + L1_Mus3 LINE L1 6128 6638 0 6 1694 1930 184 17 87 chr4 145461964 145462172 -10167948 - RMER6A LTR ERVK -1 755 578 6 1694 781 88 173 16 chr4 145462172 145462299 -10167821 - B1_Mus1 SINE Alu 0 148 2 6 1694 1930 226 42 72 chr4 145462299 145462903 -10167217 - RMER6A LTR ERVK -155 601 56 6 1694 252 256 13 0 chr4 145463404 145463482 -10166638 - L1MEg LINE L1 -4700 1384 1306 7 1694 6053 148 14 8 chr4 145464457 145466264 -10163856 - Lx3B LINE L1 -293 6680 4860 7 1694 3053 15 9 0 chr4 145466674 145467017 -10163103 + ORR1A0 LTR MaLR 1 346 0 7 1694 28 48 0 0 chr4 145467028 145467070 -10163050 + AT_rich Low_complexity Low_complexity 1 42 0 7 1694 423 351 73 18 chr4 145467097 145467494 -10162626 + Tigger1 DNA MER2_type 1712 2130 -288 7 1694 594 325 9 24 chr4 145467578 145467789 -10162331 + B3 SINE B2 9 216 0 7 1694 406 278 61 72 chr4 145468774 145469050 -10161070 - RLTR25B LTR ERVK 0 1028 700 7 1694 306 106 0 0 chr4 145469196 145469243 -10160877 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 7 1694 6112 146 64 87 chr4 145469246 145470615 -10159505 - Lx3A LINE L1 -6 6975 5638 7 1694 369 62 0 0 chr4 145470642 145470690 -10159430 + (TATG)n Simple_repeat Simple_repeat 1 48 0 7 1694 471 293 0 10 chr4 145470714 145470814 -10159306 + B3A SINE B2 25 123 -75 7 1694 303 28 0 0 chr4 145470814 145470850 -10159270 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1694 216 0 0 0 chr4 145471054 145471078 -10159042 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1694 3068 115 23 6 chr4 145471111 145471629 -10158491 - L1_Mur1 LINE L1 -259 5627 5101 7 1694 2103 100 3 73 chr4 145471664 145472021 -10158099 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 1694 54054 10 2 0 chr4 145472021 145478279 -10151841 - IAPEz-int LTR ERVK 0 6481 211 7 1694 2390 54 0 22 chr4 145478279 145478643 -10151477 - IAPEz-int LTR ERVK -6162 319 6 7 1694 2095 97 3 73 chr4 145478643 145478998 -10151122 - IAPLTR1a_Mm LTR ERVK -5 332 3 7 1694 1095 80 0 0 chr4 145478998 145479135 -10150985 - B1_Mus1 SINE Alu -11 137 1 7 1694 2605 92 0 5 chr4 145479135 145479529 -10150591 - L1_Mur1 LINE L1 -778 5108 4717 7 1694 353 157 48 0 chr4 145479720 145479803 -10150317 + L1Md_F2 LINE L1 6496 6582 0 7 1694 926 316 22 28 chr4 145480919 145481241 -10148879 - ORR1D2 LTR MaLR -8 362 43 7 1694 265 260 27 135 chr4 145481380 145481491 -10148629 - B1_Mur2 SINE Alu -1 148 21 7 1694 531 0 0 0 chr4 145481511 145481570 -10148550 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 7 1694 801 62 0 0 chr4 145482150 145482262 -10147858 + (TG)n Simple_repeat Simple_repeat 1 112 0 7 1694 24 53 0 0 chr4 145483828 145483866 -10146254 + AT_rich Low_complexity Low_complexity 1 38 0 7 1694 741 80 9 9 chr4 145484625 145484738 -10145382 - B2_Mm1t SINE B2 -7 186 74 7 1694 400 327 18 25 chr4 145485310 145485473 -10144647 - B3 SINE B2 0 216 55 7 1694 1268 115 22 0 chr4 145485502 145485685 -10144435 + B2_Mm2 SINE B2 2 188 -7 7 1694 836 28 28 0 chr4 145485801 145485910 -10144210 + (TTCTC)n Simple_repeat Simple_repeat 4 115 0 7 1694 1056 96 0 33 chr4 145486113 145486264 -10143856 - B1_Mus2 SINE Alu 0 147 2 7 1694 1545 48 5 0 chr4 145486276 145486463 -10143657 - B2_Mm1t SINE B2 -5 188 1 7 1694 2233 194 26 2 chr4 145487358 145487812 -10142308 - Lx2 LINE L1 0 6997 6533 7 1694 5003 89 34 6 chr4 145487837 145488539 -10141581 - L1Md_F2 LINE L1 0 6582 5861 7 1694 441 0 0 0 chr4 145488675 145488724 -10141396 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1694 1219 116 1 1 chr4 145489213 145489878 -10140242 + MMSAT4 Satellite Satellite 1 665 0 7 1695 923 202 4 4 chr4 145539878 145540292 -10089828 - MMSAT4 Satellite Satellite -53 414 1 1 1695 391 171 11 0 chr4 145540885 145540973 -10089147 + Lx2 LINE L1 6331 6419 -578 2 1695 2121 205 9 2 chr4 145540973 145541427 -10088693 + Lx2 LINE L1 6541 6997 0 2 1695 421 214 24 97 chr4 145542263 145542285 -10087835 + MT2B LTR ERVL 143 155 -446 3 1695 870 93 0 0 chr4 145542285 145542403 -10087717 + B1_Mus2 SINE Alu 1 118 -29 4 1695 2183 89 184 16 chr4 145542443 145542819 -10087301 + RLTR44E LTR ERVK 1 439 -13 5 1695 289 175 0 17 chr4 145543703 145543761 -10086359 - Lx3A LINE L1 -847 6134 6078 6 1695 2955 154 33 4 chr4 145543777 145544286 -10085834 + Lx3A LINE L1 6451 6974 -7 7 1695 384 152 0 0 chr4 145544287 145544353 -10085767 + GA-rich Low_complexity Low_complexity 1 66 0 8 1695 433 265 8 25 chr4 145544438 145544558 -10085562 + RLTR25A LTR ERVK 683 800 -303 9 1695 1266 296 24 20 chr4 145544794 145545554 -10084566 + MMTV-int LTR ERVK 6484 7170 -83 1 1695 286 286 115 94 chr4 145545639 145545874 -10084246 + RLTR13D3 LTR ERVK 1 240 -874 1 1695 748 105 15 8 chr4 145546671 145546805 -10083315 + L1_Mus3 LINE L1 6504 6638 0 1 1695 1096 167 5 0 chr4 145546812 145546998 -10083122 + RMER6A LTR ERVK 570 756 0 1 1695 737 317 105 5 chr4 145547145 145547592 -10082528 + Lx8 LINE L1 6464 6955 -518 1 1695 1802 177 21 52 chr4 145547692 145548115 -10082005 + RMER17C LTR ERVK 1 410 0 1 1695 614 208 173 13 chr4 145548117 145548273 -10081847 + RMER17C-int LTR ERVK 2 182 -3056 1 1695 238 222 32 0 chr4 145549720 145549783 -10080337 + (CTTG)n Simple_repeat Simple_repeat 2 66 0 1 1695 198 0 0 0 chr4 145550995 145551017 -10079103 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1695 2291 224 100 65 chr4 145551055 145551266 -10078854 - RLTR40 LTR ERVK -10 807 585 1 1695 441 0 0 0 chr4 145551266 145551315 -10078805 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1695 369 0 0 0 chr4 145551315 145551355 -10078765 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1695 2291 224 100 65 chr4 145551355 145551901 -10078219 - RLTR40 LTR ERVK -233 584 23 1 1695 1474 176 270 38 chr4 145552114 145552488 -10077632 - RMER6B LTR ERVK 0 461 1 2 1695 436 256 66 96 chr4 145552840 145553187 -10076933 - RMER6A LTR ERVK -5 751 409 2 1695 874 202 9 69 chr4 145553109 145553327 -10076793 + RMER10B LTR ERVL 194 398 0 2 1695 1008 104 6 30 chr4 145553950 145554119 -10076001 + L1Md_F2 LINE L1 6417 6581 -1 2 1695 286 338 0 0 chr4 145554508 145554585 -10075535 - B3 SINE B2 -133 83 7 2 1695 21 0 0 0 chr4 145554750 145554771 -10075349 + AT_rich Low_complexity Low_complexity 1 21 0 2 1695 232 303 54 150 chr4 145554859 145555026 -10075094 + B4 SINE B4 73 223 -69 2 1695 456 281 7 41 chr4 145554886 145555031 -10075089 + B1_Mur1 SINE Alu 10 149 0 2 1695 3581 154 20 2 chr4 145555200 145555810 -10074310 + Lx LINE L1 6025 6645 -9 2 1695 336 333 39 23 chr4 145556458 145556587 -10073533 + B3 SINE B2 1 131 -85 3 1695 200 132 26 0 chr4 145556834 145556872 -10073248 + T-rich Low_complexity Low_complexity 1 39 0 3 1695 310 219 40 40 chr4 145556872 145556948 -10073172 - PB1D7 SINE Alu -27 93 18 3 1695 300 271 2 60 chr4 145556880 145556987 -10073133 - ID_B1 SINE B4 -58 166 70 3 1695 514 223 19 0 chr4 145557464 145557567 -10072553 + B1_Mur3 SINE Alu 31 135 -14 3 1695 1119 200 43 0 chr4 145557574 145557784 -10072336 - RLTR20D LTR ERVK -349 219 1 3 1695 392 294 155 32 chr4 145557858 145558136 -10071984 + MLT1B LTR MaLR 60 371 -19 3 1695 380 314 88 8 chr4 145558331 145558456 -10071664 + RSINE1 SINE B4 3 137 -28 3 1695 212 0 36 0 chr4 145558490 145558518 -10071602 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 3 1695 1189 280 41 32 chr4 145558525 145558865 -10071255 - MTEb LTR MaLR -36 343 1 3 1695 287 258 0 0 chr4 145560126 145560192 -10069928 + B3A SINE B2 2 67 -131 4 1695 1063 227 13 114 chr4 145560385 145560693 -10069427 + RLTR25B LTR ERVK 55 331 -697 4 1695 1695 132 64 4 chr4 145560724 145561005 -10069115 + RMER17B LTR ERVK 1 298 -660 4 1695 2858 230 47 8 chr4 145561737 145562378 -10067742 + RMER17B LTR ERVK 289 954 -4 4 1695 867 209 19 118 chr4 145562380 145562651 -10067469 + RLTR25B LTR ERVK 329 572 -531 4 1695 298 340 68 0 chr4 145562675 145562778 -10067342 + B1_Mur3 SINE Alu 3 112 -37 4 1695 238 308 0 0 chr4 145562778 145562812 -10067308 + ORR1A3-int LTR MaLR 743 867 -1096 4 1695 7961 165 31 8 chr4 145562946 145565338 -10064782 + Lx3A LINE L1 4472 6928 -53 4 1695 351 0 0 0 chr4 145565546 145565585 -10064535 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1695 262 264 0 27 chr4 145565864 145565938 -10064182 + (CATA)n Simple_repeat Simple_repeat 1 72 0 4 1695 424 371 50 29 chr4 145566531 145567086 -10063034 + L1M2 LINE L1 3792 4358 -1785 4 1695 420 289 96 36 chr4 145567124 145567375 -10062745 + Lx8 LINE L1 6469 6734 -739 4 1695 1181 55 7 0 chr4 145567376 145567521 -10062599 + B1_Mm SINE Alu 1 146 -1 5 1695 213 65 0 0 chr4 145567539 145567570 -10062550 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 5 1695 27 49 0 0 chr4 145569888 145569929 -10060191 + AT_rich Low_complexity Low_complexity 1 41 0 5 1695 243 88 0 0 chr4 145570415 145570449 -10059671 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 5 1695 237 22 89 0 chr4 145571024 145571069 -10059051 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1695 222 233 0 0 chr4 145571298 145571358 -10058762 + A-rich Low_complexity Low_complexity 1 60 0 5 1695 180 0 0 0 chr4 145571766 145571786 -10058334 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1695 921 222 47 39 chr4 145571840 145572213 -10057907 - RLTR40 LTR ERVK -42 775 447 5 1695 301 200 57 0 chr4 145572207 145572277 -10057843 - RLTR40 LTR ERVK -743 74 1 5 1695 1036 315 11 3 chr4 145572474 145572834 -10057286 + Lx6 LINE L1 6270 6632 -828 5 1695 315 308 91 102 chr4 145573111 145573153 -10056967 + RLTR18 LTR ERVK 1 43 -469 5 1695 1013 78 0 48 chr4 145573153 145573300 -10056820 + B1_Mm SINE Alu 2 141 -6 6 1695 222 37 0 0 chr4 145573303 145573330 -10056790 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1695 877 307 106 59 chr4 145573330 145573385 -10056735 + RLTR18 LTR ERVK 44 103 -409 5 1695 249 33 0 0 chr4 145573385 145573415 -10056705 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1695 877 306 116 30 chr4 145573415 145573812 -10056308 + RLTR18 LTR ERVK 101 530 -86 5 1695 13400 130 30 76 chr4 145573881 145575846 -10054274 + Lx2 LINE L1 3156 5121 -762 6 1695 1208 63 6 0 chr4 145575846 145576004 -10054116 + B2_Mm1t SINE B2 2 160 -33 6 1695 213 39 0 0 chr4 145576004 145576030 -10054090 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 6 1695 13400 130 30 76 chr4 145576030 145576168 -10053952 + Lx2 LINE L1 5122 5254 -629 6 1695 1064 97 0 7 chr4 145576168 145576313 -10053807 + B1_Mus2 SINE Alu 3 146 -1 6 1695 13400 130 30 76 chr4 145576313 145576342 -10053778 + Lx2 LINE L1 5255 5281 -602 6 1695 5675 115 6 1 chr4 145576342 145577188 -10052932 + L1_Mus3 LINE L1 5783 6632 -6 6 1695 13400 137 36 38 chr4 145577188 145578450 -10051670 + Lx2 LINE L1 5282 6609 -388 6 1695 225 94 0 0 chr4 145578830 145578862 -10051258 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1695 1226 41 0 0 chr4 145579419 145579566 -10050554 + B1_Mm SINE Alu 1 147 0 6 1695 258 32 0 0 chr4 145579566 145579597 -10050523 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1695 330 152 0 0 chr4 145579677 145579736 -10050384 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1695 713 66 189 0 chr4 145580525 145580647 -10049473 + B2_Mm2 SINE B2 50 194 -1 7 1695 1065 116 0 0 chr4 145582012 145582159 -10047961 + B1_Mus1 SINE Alu 1 147 -1 7 1695 2600 231 20 109 chr4 145582621 145583388 -10046732 + RMER6A LTR ERVK 57 754 -2 7 1695 1179 55 0 0 chr4 145583414 145583560 -10046560 + B1_Mm SINE Alu 2 147 0 7 1695 498 335 105 13 chr4 145583857 145584229 -10045891 + Lx8 LINE L1 6466 6871 -602 7 1695 2047 157 104 130 chr4 145585719 145586296 -10043824 + LTRIS2 LTR ERV1 3 564 0 7 1695 636 70 0 0 chr4 145587218 145587304 -10042816 + (CTTG)n Simple_repeat Simple_repeat 2 87 0 7 1695 21 0 0 0 chr4 145587836 145587857 -10042263 + AT_rich Low_complexity Low_complexity 1 21 0 7 1695 1394 51 0 9 chr4 145588126 145588352 -10041768 + (GAAA)n Simple_repeat Simple_repeat 1 223 0 8 1695 2404 218 82 72 chr4 145588823 145589590 -10040530 - RLTR40 LTR ERVK -42 775 1 8 1695 1185 305 65 2 chr4 145589723 145590157 -10039963 + Lx6 LINE L1 6174 6634 -826 8 1695 288 257 4 71 chr4 145590794 145590885 -10039235 - B1_Mm SINE Alu -33 116 27 8 1695 1351 314 73 35 chr4 145591060 145591652 -10038468 + RLTR18 LTR ERVK 1 614 -2 8 1695 258 315 41 0 chr4 145592017 145592090 -10038030 + RLTR18B LTR ERVK 432 507 -5 8 1695 985 118 0 14 chr4 145592387 145592533 -10037587 + B1_Mm SINE Alu 1 144 -3 8 1695 1128 82 0 0 chr4 145592977 145593123 -10036997 + B1_Mm SINE Alu 2 147 0 8 1695 208 49 73 0 chr4 145593127 145593168 -10036952 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1695 32 26 0 0 chr4 145594067 145594106 -10036014 + GC_rich Low_complexity Low_complexity 1 39 0 8 1695 481 73 12 0 chr4 145594357 145594439 -10035681 + L1Md_F3 LINE L1 6500 6582 -2 9 1695 1265 34 0 0 chr4 145594445 145594592 -10035528 + B1_Mus2 SINE Alu 1 147 0 9 1695 1327 234 27 36 chr4 145594599 145595073 -10035047 + RMER3D-int LTR ERVK 2372 2841 -1 9 1695 1314 96 11 0 chr4 145595074 145595262 -10034858 + BGLII LTR ERVK 1 190 -231 9 1695 521 288 43 25 chr4 145595262 145595467 -10034653 + RMER1A Other Other 19 185 -845 9 1695 2494 167 12 16 chr4 145595481 145595530 -10034590 - L1_Mur2 LINE L1 -553 5324 5281 9 1695 1629 122 33 66 chr4 145595530 145595863 -10034257 + RLTRETN_Mm LTR ERVK 1 322 0 9 1695 2494 167 12 16 chr4 145595863 145596325 -10033795 - L1_Mur2 LINE L1 -597 5280 4815 9 1695 3899 145 30 9 chr4 145596336 145597213 -10032907 + Lx4A LINE L1 5409 6308 -750 9 1695 1441 166 15 0 chr4 145597209 145597474 -10032646 + Lx3B LINE L1 6180 6448 -525 9 1695 288 252 17 25 chr4 145597485 145597603 -10032517 + L1_Rod LINE L1 5695 5811 -36 9 1695 1538 97 0 0 chr4 145597663 145597890 -10032230 - L1_Mur1 LINE L1 -1211 4675 4449 9 1695 981 85 18 18 chr4 145597905 145598073 -10032047 - L1_Mus3 LINE L1 -2 6636 6469 1 1695 7623 99 4 15 chr4 145598068 145599309 -10030811 - L1_Mur1 LINE L1 -1423 4463 3263 9 1695 1230 41 0 0 chr4 145599309 145599456 -10030664 - B1_Mm SINE Alu 0 147 1 1 1695 6473 163 4 72 chr4 145599456 145599705 -10030415 - L1_Mur1 LINE L1 -2609 3268 3066 9 1695 5076 117 3 20 chr4 145599707 145600563 -10029557 + L1_Mur1 LINE L1 4679 5520 -366 1 1695 1248 142 243 25 chr4 145600954 145601392 -10028728 - RMER5 LTR ERV1 -1 533 1 1 1695 1156 136 82 0 chr4 145602522 145602728 -10027392 - Lx2 LINE L1 0 6997 6775 1 1695 617 80 0 0 chr4 145602728 145602816 -10027304 - Lx2 LINE L1 -354 6643 6556 1 1695 888 133 0 0 chr4 145603127 145603270 -10026850 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 1 1695 1581 37 21 0 chr4 145603270 145603458 -10026662 + B2_Mm1t SINE B2 1 192 -1 1 1695 1015 198 15 10 chr4 145603656 145603855 -10026265 - Lx5 LINE L1 -10 7040 6841 1 1695 996 184 122 15 chr4 145603920 145603981 -10026139 - URR1A DNA MER1_type 0 226 168 1 1695 3195 61 2 2 chr4 145603981 145604377 -10025743 + MTA_Mm LTR MaLR 1 396 0 1 1695 996 184 122 15 chr4 145604377 145604519 -10025601 - URR1A DNA MER1_type -59 167 1 1 1695 523 117 0 0 chr4 145605204 145605281 -10024839 - RMER5 LTR ERV1 0 534 458 1 1695 427 286 47 70 chr4 145605401 145605657 -10024463 + RMER17C LTR ERVK 127 376 -34 1 1695 2196 105 6 12 chr4 145605662 145605991 -10024129 + ORR1A4 LTR MaLR 1 327 -2 1 1695 1281 228 19 11 chr4 145606044 145606310 -10023810 - RMER5 LTR ERV1 -244 290 23 1 1695 1093 221 207 80 chr4 145606548 145606825 -10023295 - MT2A LTR ERVL 0 533 191 1 1695 237 33 0 0 chr4 145606825 145606855 -10023265 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1695 1093 221 207 80 chr4 145606855 145606966 -10023154 - MT2A LTR ERVL -343 190 91 1 1695 399 41 0 0 chr4 145606966 145607015 -10023105 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 1 1695 1093 221 207 80 chr4 145607015 145607098 -10023022 - MT2A LTR ERVL -443 90 4 1 1695 1486 60 0 11 chr4 145607821 145608007 -10022113 - B2_Mm1t SINE B2 -8 185 2 1 1695 270 0 0 0 chr4 145608425 145608455 -10021665 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1695 2123 234 48 21 chr4 145608696 145609197 -10020923 + RMER5 LTR ERV1 1 520 -14 1 1695 1272 63 75 0 chr4 145609197 145609371 -10020749 - B2_Mm2 SINE B2 -5 190 4 1 1695 2123 234 48 21 chr4 145609371 145609389 -10020731 + RMER5 LTR ERV1 521 534 0 1 1695 201 163 40 20 chr4 145609563 145609613 -10020507 + GA-rich Low_complexity Low_complexity 4 54 0 1 1695 1179 48 7 0 chr4 145611493 145611638 -10018482 + B1_Mus2 SINE Alu 2 147 0 1 1695 2256 188 99 2 chr4 145611696 145612170 -10017950 + RMER5 LTR ERV1 15 534 0 1 1695 340 161 0 16 chr4 145612332 145612395 -10017725 + RMER1A Other Other 52 113 -917 1 1695 346 284 8 65 chr4 145612400 145612524 -10017596 - RMER5 LTR ERV1 -404 130 14 1 1695 755 196 35 7 chr4 145612536 145612680 -10017440 - B1_Mur3 SINE Alu -1 148 1 1 1695 578 143 0 8 chr4 145613186 145613320 -10016800 + GA-rich Low_complexity Low_complexity 1 133 0 1 1695 1081 257 120 6 chr4 145613347 145613680 -10016440 - MTD LTR MaLR -48 371 1 1 1695 2947 220 35 35 chr4 145613695 145613839 -10016281 - Lx7 LINE L1 0 7696 7544 1 1695 654 79 0 0 chr4 145613839 145613928 -10016192 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 1 1695 2947 220 35 35 chr4 145613928 145614490 -10015630 - Lx7 LINE L1 -153 7543 6990 1 1695 405 0 0 0 chr4 145614496 145614541 -10015579 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1 1695 1220 83 0 0 chr4 145614541 145614698 -10015422 - B2_Mm2 SINE B2 -34 161 5 1 1695 1384 57 85 0 chr4 145616681 145616698 -10013422 - B2_Mm1a SINE B2 -1 192 176 1 1695 603 0 0 0 chr4 145616698 145616765 -10013355 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 1 1695 1384 57 85 0 chr4 145616765 145616923 -10013197 - B2_Mm1a SINE B2 -18 175 3 1 1695 29 60 0 0 chr4 145617597 145617647 -10012473 + GC_rich Low_complexity Low_complexity 1 50 0 1 1695 235 204 0 0 chr4 145618148 145618197 -10011923 - Lx6 LINE L1 -459 7001 6953 1 1695 809 236 6 0 chr4 145618197 145618362 -10011758 - Lx6 LINE L1 -818 6642 6477 1 1695 1694 138 65 146 chr4 145618364 145618762 -10011358 + ORR1B1 LTR MaLR 29 394 0 1 1695 1057 231 163 6 chr4 145619172 145619262 -10010858 - ORR1D2 LTR MaLR -4 366 274 1 1695 2057 165 41 16 chr4 145619262 145619625 -10010495 + ORR1D1 LTR MaLR 1 372 -2 1 1695 1057 231 163 6 chr4 145619625 145619847 -10010273 - ORR1D2 LTR MaLR -97 273 5 1 1695 553 239 0 0 chr4 145619875 145619988 -10010132 - ORR1D2-int LTR MaLR -723 647 535 1 1695 565 196 54 19 chr4 145620014 145620185 -10009935 - B3 SINE B2 -19 176 1 1 1695 1866 240 63 6 chr4 145620192 145620687 -10009433 - ORR1D2-int LTR MaLR -837 533 11 1 1695 243 268 18 0 chr4 145620857 145620913 -10009207 + ORR1D1 LTR MaLR 1 57 -317 1 211 731 283 85 97 chr4 145620924 145621104 -10009016 - ORR1D2 LTR MaLR -32 338 144 1 1696 1730 37 0 0 chr4 145621104 145621295 -10008825 + B2_Mm1t SINE B2 2 192 -1 1 1696 731 283 85 97 chr4 145621295 145621454 -10008666 - ORR1D2 LTR MaLR -227 143 3 1 1696 748 82 0 0 chr4 145621839 145621936 -10008184 + B1_Mus2 SINE Alu 41 137 -10 1 1696 342 0 0 0 chr4 145621936 145621974 -10008146 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1696 1816 238 33 0 chr4 145622122 145622517 -10007603 - MT2A LTR ERVL -123 410 3 1 1696 1221 205 75 4 chr4 145622988 145623253 -10006867 + ORR1C1 LTR MaLR 1 284 -94 1 1696 14236 74 13 4 chr4 145623253 145624068 -10006052 - L1VL4 LINE L1 -718 2841 2020 1 1696 3043 41 6 0 chr4 145624068 145624412 -10005708 + ORR1A0 LTR MaLR 1 346 0 1 1696 14236 94 19 4 chr4 145624412 145626363 -10003757 - L1VL4 LINE L1 -1540 2019 36 1 1696 15627 146 81 21 chr4 145626365 145630402 -9999718 + Lx4B LINE L1 2744 7039 -19 1 1696 4449 62 13 13 chr4 145630488 145631039 -9999081 - L1_Mus1 LINE L1 0 6567 6017 1 1696 4714 175 23 18 chr4 145631895 145632793 -9997327 + L1_Mur3 LINE L1 4893 5795 -85 1 1696 362 178 0 11 chr4 145633496 145633587 -9996533 + GA-rich Low_complexity Low_complexity 2 91 0 1 1696 861 190 83 6 chr4 145633931 145634117 -9996003 + Lx6 LINE L1 5755 5961 -1499 1 1696 2059 197 54 3 chr4 145634125 145634516 -9995604 + Lx6 LINE L1 6067 6477 -983 1 1696 387 41 0 0 chr4 145634589 145634638 -9995482 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1696 237 132 0 0 chr4 145634699 145634737 -9995383 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1696 1067 91 12 0 chr4 145635290 145635455 -9994665 + (TATG)n Simple_repeat Simple_repeat 2 168 0 1 1696 440 18 18 0 chr4 145635803 145635860 -9994260 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 1 1696 298 208 125 0 chr4 145636223 145636295 -9993825 - Lx9 LINE L1 -219 7425 7345 1 1696 282 158 35 17 chr4 145636297 145636355 -9993765 + RLTR26 LTR ERVK 268 326 -316 1 1696 3172 228 91 11 chr4 145636355 145637100 -9993020 - Lx9 LINE L1 -314 7330 6526 1 1696 317 206 103 0 chr4 145637832 145637895 -9992225 + MTEb LTR MaLR 5 74 -305 1 1696 3294 186 35 19 chr4 145637895 145638527 -9991593 + RLTR26 LTR ERVK 1 642 0 1 1696 812 244 124 110 chr4 145638527 145638826 -9991294 + MTEb LTR MaLR 76 379 0 1 1696 522 0 0 0 chr4 145639068 145639126 -9990994 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1696 366 200 53 0 chr4 145639132 145639207 -9990913 + Lx6 LINE L1 6145 6223 -1237 1 1696 23 33 0 0 chr4 145639727 145639757 -9990363 + AT_rich Low_complexity Low_complexity 1 30 0 1 1696 417 66 0 0 chr4 145639818 145639879 -9990241 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1696 207 0 0 0 chr4 145639879 145639902 -9990218 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1696 207 0 0 0 chr4 145640016 145640039 -9990081 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1 1696 1158 200 20 0 chr4 145640039 145640234 -9989886 - B3 SINE B2 -16 200 2 1 1696 1636 211 53 25 chr4 145640423 145640782 -9989338 + RLTR17 LTR ERVK 324 692 0 1 1696 264 286 0 72 chr4 145640782 145640864 -9989256 + B4A SINE B4 203 278 -14 1 1696 288 0 0 0 chr4 145640875 145640907 -9989213 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1696 315 0 0 0 chr4 145640907 145640941 -9989179 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1696 214 358 125 5 chr4 145641009 145641225 -9988895 - L3 LINE CR1 -458 4031 3790 1 1696 1155 175 120 0 chr4 145641345 145641545 -9988575 + URR1A DNA MER1_type 1 224 -2 1 1696 647 209 96 15 chr4 145641606 145641742 -9988378 + B1F SINE Alu 1 147 -2 1 1696 245 290 153 26 chr4 145642277 145642515 -9987605 + MLT1E2 LTR MaLR 1 275 -230 1 1696 985 214 35 10 chr4 145643326 145643529 -9986591 - MTC LTR MaLR 0 421 214 1 1696 450 53 0 0 chr4 145643799 145643856 -9986264 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1696 1287 82 38 6 chr4 145643933 145644116 -9986004 - L1_Mus2 LINE L1 0 6566 6378 1 1696 21 0 0 0 chr4 145644669 145644690 -9985430 + AT_rich Low_complexity Low_complexity 1 21 0 1 1696 259 361 35 23 chr4 145644994 145645136 -9984984 + MIR3 SINE MIR 21 163 -45 1 1696 3160 66 10 13 chr4 145646574 145646971 -9983149 + MTA_Mm LTR MaLR 1 396 0 1 1696 2386 164 13 13 chr4 145647858 145648236 -9981884 - ORR1C1 LTR MaLR 0 378 1 1 1696 21 36 0 0 chr4 145648629 145648657 -9981463 + AT_rich Low_complexity Low_complexity 1 28 0 1 1696 804 223 7 0 chr4 145648671 145648819 -9981301 - B1_Mur4 SINE Alu -1 149 1 1 1696 222 42 41 41 chr4 145648824 145648873 -9981247 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1696 1075 110 7 0 chr4 145648883 145649028 -9981092 - B1_Mus1 SINE Alu 0 148 3 1 1696 237 268 19 85 chr4 145649061 145649167 -9980953 - L1M3 LINE L1 -609 5559 5461 1 1696 7741 62 6 11 chr4 145649172 145650421 -9979699 - L1Md_F2 LINE L1 -3 6579 5345 1 1696 749 246 80 25 chr4 145650430 145650630 -9979490 - B3 SINE B2 -1 215 5 1 1696 197 33 33 0 chr4 145650703 145650733 -9979387 + (TATG)n Simple_repeat Simple_repeat 1 31 0 1 1696 459 0 0 0 chr4 145651937 145651988 -9978132 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1696 441 0 0 0 chr4 145652437 145652486 -9977634 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1696 5292 137 23 6 chr4 145652820 145653616 -9976504 - RMER17D2 LTR ERVK 0 809 1 1 1696 235 356 35 35 chr4 145653796 145653965 -9976155 + MLT1B LTR MaLR 117 285 -105 1 1696 452 231 37 7 chr4 145654574 145654709 -9975411 - L1_Mur1 LINE L1 -2434 3452 3314 1 1696 4507 195 26 8 chr4 145654710 145655878 -9974242 + Lx2B LINE L1 5408 6598 -402 1 1696 360 0 0 0 chr4 145658183 145658223 -9971897 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1696 217 48 0 67 chr4 145658261 145658306 -9971814 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 2 1696 313 351 57 72 chr4 145658625 145658904 -9971216 - RMER15 LTR ERVL -83 492 218 2 1696 1301 139 7 3 chr4 145659344 145660872 -9969248 - MMSAT4 Satellite Satellite -7 1532 1 2 1696 3780 180 15 11 chr4 145661471 145662140 -9967980 + Lx2 LINE L1 6326 6997 0 2 1696 366 23 0 0 chr4 145662404 145662447 -9967673 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1696 226 360 0 0 chr4 145662509 145662620 -9967500 - MurSatRep1 Unknown Unknown -1416 721 611 2 1696 1398 61 60 16 chr4 145662982 145663144 -9966976 + B2_Mm1a SINE B2 2 160 -33 2 1696 339 25 0 0 chr4 145663144 145663184 -9966936 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 1696 1398 61 60 16 chr4 145663184 145663205 -9966915 + B2_Mm1a SINE B2 161 191 -2 2 1696 235 337 43 33 chr4 145664351 145664443 -9965677 + B3A SINE B2 26 118 -80 2 1696 1802 31 0 0 chr4 145665034 145665227 -9964893 + B2_Mm1t SINE B2 1 193 0 2 1696 1084 109 0 0 chr4 145665245 145665392 -9964728 + B1_Mus2 SINE Alu 1 147 0 2 1696 374 313 108 0 chr4 145668537 145668732 -9961388 + B3 SINE B2 1 216 0 2 1696 723 69 0 0 chr4 145668933 145669034 -9961086 + B1_Mus1 SINE Alu 35 135 -13 2 1696 216 0 0 0 chr4 145669035 145669059 -9961061 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1696 958 96 52 0 chr4 145669059 145669194 -9960926 + B1_Mm SINE Alu 1 142 -5 2 1696 302 75 0 0 chr4 145669206 145669246 -9960874 + HAL1-3A_ME LINE L1 1973 2012 -846 2 1696 356 59 20 0 chr4 145669254 145669305 -9960815 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1696 322 0 0 0 chr4 145669305 145669343 -9960777 + HAL1-3A_ME LINE L1 1975 2012 -846 2 1696 241 222 19 0 chr4 145669784 145669838 -9960282 - MurSatRep1 Unknown Unknown -1853 284 230 2 1696 499 294 14 0 chr4 145670754 145670900 -9959220 + B1_Mur2 SINE Alu 1 148 -1 2 1696 723 332 38 22 chr4 145671033 145671347 -9958773 + ORR1D2 LTR MaLR 43 361 -9 2 1696 1089 88 0 0 chr4 145672080 145672227 -9957893 + B1_Mus2 SINE Alu 1 147 0 2 1696 241 211 0 0 chr4 145672768 145672820 -9957300 + B3A SINE B2 2 53 -145 2 1696 1191 248 97 79 chr4 145673024 145673314 -9956806 + RLTR25B LTR ERVK 54 331 -697 2 1696 4627 191 34 18 chr4 145673314 145674257 -9955863 + RMER17B LTR ERVK 1 958 0 2 1696 1191 248 97 79 chr4 145674257 145674500 -9955620 + RLTR25B LTR ERVK 332 597 -431 2 1696 227 250 44 165 chr4 145674481 145674572 -9955548 + MT2B2 LTR ERVL 206 285 -299 2 1696 7387 126 8 16 chr4 145674811 145675123 -9954997 + Lx3B LINE L1 4715 5024 -862 2 1696 1318 82 38 0 chr4 145675123 145675307 -9954813 + B2_Mm1t SINE B2 3 193 0 2 1696 7387 148 16 11 chr4 145675307 145677190 -9952930 + Lx3B LINE L1 5025 6919 -54 2 1696 285 230 27 0 chr4 145677716 145677790 -9952330 + (CATA)n Simple_repeat Simple_repeat 1 76 0 2 1696 1148 82 0 0 chr4 145677803 145677949 -9952171 + B1_Mus2 SINE Alu 2 147 0 2 1696 213 39 0 0 chr4 145677949 145677975 -9952145 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1696 283 250 12 0 chr4 145679533 145679613 -9950507 + L1MEg LINE L1 1306 1386 -4698 2 1696 1923 216 29 55 chr4 145680122 145680731 -9949389 + RMER6A LTR ERVK 56 575 -181 2 1696 762 87 157 60 chr4 145680731 145680865 -9949255 + B1_Mus1 SINE Alu 2 148 0 2 1696 1923 180 2 102 chr4 145680865 145681082 -9949038 + RMER6A LTR ERVK 576 754 -2 2 1696 3034 134 4 84 chr4 145681230 145681786 -9948334 - L1_Mus3 LINE L1 0 6638 6128 2 1696 920 325 71 13 chr4 145681948 145682412 -9947708 + Lx8 LINE L1 6464 6954 -519 2 1696 426 46 750 27 chr4 145683374 145683486 -9946634 - B2_Mm1t SINE B2 0 193 1 2 1696 959 200 59 4 chr4 145683690 145683926 -9946194 + RMER6A LTR ERVK 354 602 -154 2 1696 1159 68 0 0 chr4 145683926 145684072 -9946048 + B1_Mus2 SINE Alu 2 147 0 2 1696 291 54 0 0 chr4 145684072 145684109 -9946011 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1696 851 198 17 0 chr4 145684109 145684286 -9945834 + RMER6A LTR ERVK 577 756 0 2 1696 805 326 88 18 chr4 145684580 145685036 -9945084 + Lx8 LINE L1 6467 6954 -519 2 1696 996 46 0 0 chr4 145685601 145685732 -9944388 + B1_Mus1 SINE Alu 18 148 0 2 1696 360 64 0 0 chr4 145685736 145685783 -9944337 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1696 2094 48 0 23 chr4 145686197 145686496 -9943624 - RLTR4_Mm LTR ERV1 0 742 451 2 1696 438 142 73 28 chr4 145686473 145686582 -9943538 - RLTR4_Mm LTR ERV1 -468 274 161 2 1696 1562 59 5 9 chr4 145686563 145686785 -9943335 - RLTR4_Mm LTR ERV1 -521 221 1 2 1696 61042 68 4 1 chr4 145686787 145694366 -9935754 - MuLV-int LTR ERV1 0 7606 1 2 1696 2094 48 0 23 chr4 145694368 145694667 -9935453 - RLTR4_Mm LTR ERV1 0 742 451 2 1696 438 142 73 28 chr4 145694644 145694753 -9935367 - RLTR4_Mm LTR ERV1 -468 274 161 2 1696 1562 59 5 9 chr4 145694734 145694956 -9935164 - RLTR4_Mm LTR ERV1 -521 221 1 2 1696 333 0 0 0 chr4 145695151 145695188 -9934932 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 2 1696 330 80 0 0 chr4 145696233 145696283 -9933837 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 2 1696 291 28 0 0 chr4 145696292 145696328 -9933792 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1696 1199 54 0 0 chr4 145696329 145696476 -9933644 - B1_Mus2 SINE Alu 0 147 1 2 1696 708 64 0 0 chr4 145697278 145697372 -9932748 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 2 1696 1813 227 93 108 chr4 145697847 145698665 -9931455 - RLTR40 LTR ERVK -11 806 1 2 1696 21 0 0 0 chr4 145698751 145698772 -9931348 + AT_rich Low_complexity Low_complexity 1 21 0 2 1696 1205 297 77 11 chr4 145698793 145699233 -9930887 + Lx6 LINE L1 6172 6640 -820 2 1696 510 17 0 0 chr4 145699248 145699307 -9930813 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1696 263 253 0 62 chr4 145699933 145700013 -9930107 - B1_Mm SINE Alu -47 100 26 2 1696 3114 62 179 5 chr4 145700062 145700498 -9929622 + RLTR1B LTR ERV1 1 512 0 2 1696 1184 256 49 35 chr4 145700625 145701148 -9928972 + RLTR18 LTR ERVK 1 511 -105 2 1696 292 328 44 44 chr4 145701183 145701365 -9928755 + RMER21B LTR ERV1 326 507 -335 2 1696 235 311 40 0 chr4 145701556 145701630 -9928490 + RLTR18 LTR ERVK 436 512 0 2 1696 237 65 0 0 chr4 145701947 145701978 -9928142 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1696 474 254 18 0 chr4 145701978 145702092 -9928028 + Lx6 LINE L1 7321 7436 -24 2 1696 392 150 29 29 chr4 145702090 145702193 -9927927 - L1_Mur2 LINE L1 -2113 3764 3662 2 1696 1245 124 0 16 chr4 145704155 145704344 -9925776 - B2_Mm2 SINE B2 -9 186 1 2 1696 1265 27 0 0 chr4 145704359 145704506 -9925614 - B1_Mus2 SINE Alu 0 147 1 2 1696 858 115 14 21 chr4 145704694 145704836 -9925284 - B1_Mus1 SINE Alu -7 141 1 2 1696 373 215 16 116 chr4 145704734 145704855 -9925265 - MT2B LTR ERVL -344 257 149 2 1696 4054 179 42 43 chr4 145705033 145705886 -9924234 + RLTR13D3 LTR ERVK 263 1114 0 2 1696 1700 136 0 54 chr4 145706273 145706607 -9923513 + BGLII_B LTR ERVK 1 316 -125 2 1696 5377 228 29 35 chr4 145706614 145706724 -9923396 + MYSERV6-int LTR ERVK 3016 3124 -5835 2 1696 907 146 14 14 chr4 145706724 145706870 -9923250 + B1_Mus1 SINE Alu 2 147 -1 2 1696 5377 228 29 35 chr4 145706870 145708088 -9922032 + MYSERV6-int LTR ERVK 3125 4336 -4623 2 1696 511 284 12 55 chr4 145708062 145708226 -9921894 + MYSERV16_I-int LTR ERVK 924 1080 -1246 2 1696 3606 204 59 23 chr4 145708219 145709172 -9920948 + MYSERV16_I-int LTR ERVK 1262 2248 -78 2 1696 2458 140 23 18 chr4 145709240 145709676 -9920444 + BGLII_B LTR ERVK 4 441 0 2 1696 376 235 31 2 chr4 145709794 145709892 -9920228 + Lx2B LINE L1 6804 6907 -101 2 1696 1411 78 10 5 chr4 145710657 145710849 -9919271 + B2_Mm1t SINE B2 1 193 0 2 1696 21 0 0 0 chr4 145710862 145710883 -9919237 + AT_rich Low_complexity Low_complexity 1 21 0 2 1696 253 182 18 0 chr4 145711692 145711747 -9918373 + MYSERV6-int LTR ERVK 4953 5008 -1159 2 1696 1101 102 0 0 chr4 145712066 145712213 -9917907 + B1_Mus1 SINE Alu 2 148 0 2 1696 189 175 0 0 chr4 145712218 145712258 -9917862 + A-rich Low_complexity Low_complexity 1 40 0 2 1696 249 146 0 0 chr4 145712830 145712878 -9917242 + (GGA)n Simple_repeat Simple_repeat 2 49 0 2 1696 625 278 101 11 chr4 145713482 145713671 -9916449 - MT2A LTR ERVL -145 388 183 2 1696 343 289 0 0 chr4 145713708 145713805 -9916315 - MTEa LTR MaLR -280 99 3 2 1696 265 349 8 15 chr4 145713810 145713941 -9916179 + RMER15 LTR ERVL 295 424 -151 2 1696 681 234 14 0 chr4 145714752 145714897 -9915223 - B1_Mus1 SINE Alu 0 148 2 2 1696 1020 70 0 83 chr4 145715212 145715368 -9914752 - B1_Mm SINE Alu -3 144 2 2 1696 228 325 62 12 chr4 145715856 145715937 -9914183 + B1F2 SINE Alu 1 85 -64 2 1696 330 67 0 0 chr4 145715959 145716004 -9914116 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1696 432 0 0 0 chr4 145716695 145716743 -9913377 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1696 642 170 40 13 chr4 145716961 145717110 -9913010 - Lx LINE L1 -16 6638 6486 2 1696 2949 118 5 2 chr4 145717334 145717766 -9912354 - Lx LINE L1 -179 6475 6043 2 1696 760 176 0 0 chr4 145717758 145717889 -9912231 + Lx LINE L1 5905 6035 -619 2 1696 189 0 0 0 chr4 145718066 145718087 -9912033 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1696 1172 61 0 7 chr4 145718087 145718235 -9911885 - B1_Mus2 SINE Alu 0 147 1 2 1696 635 165 14 36 chr4 145718998 145719136 -9910984 - ORR1A3 LTR MaLR -9 317 183 2 1696 754 203 20 15 chr4 145719137 145719337 -9910783 - Lx2B LINE L1 -789 6211 6011 2 1696 898 251 130 35 chr4 145719430 145719831 -9910289 + RMER10A LTR ERVL 3 441 -1 2 1696 25 0 0 0 chr4 145724069 145724094 -9906026 + AT_rich Low_complexity Low_complexity 1 25 0 2 1696 2015 161 143 39 chr4 145724380 145724891 -9905229 + ETnERV2-int LTR ERVK 256 819 -4587 2 1696 4019 211 30 40 chr4 145724899 145725787 -9904333 + ETnERV2-int LTR ERVK 1727 2600 -4806 2 1696 1364 86 11 0 chr4 145725787 145725973 -9904147 - B2_Mm1t SINE B2 -4 189 2 2 1696 4019 211 30 40 chr4 145725973 145726118 -9904002 + ETnERV2-int LTR ERVK 2601 2750 -4656 2 1696 2347 180 24 29 chr4 145726110 145726702 -9903418 + RMER16-int LTR ERVK 2303 2839 -2567 2 1696 1786 270 45 19 chr4 145726724 145727422 -9902698 + RMER16-int LTR ERVK 4083 4534 -2872 2 1696 780 246 10 26 chr4 145727489 145727681 -9902439 + RMER16-int LTR ERVK 5127 5315 -2091 2 1696 287 328 43 5 chr4 145727672 145727856 -9902264 + SRV_MM-int LTR ERVK 5078 5268 -899 2 1696 1547 111 4 0 chr4 145728422 145728647 -9901473 + MMERVK10C-int LTR ERVK 7356 7581 0 2 1696 1880 143 10 10 chr4 145728647 145728958 -9901162 + RLTR10E LTR ERVK 1 311 0 2 1696 287 371 10 0 chr4 145729673 145729770 -9900350 - RMER15 LTR ERVL -237 338 241 2 1696 1261 137 11 3 chr4 145730330 145731689 -9898431 - MMSAT4 Satellite Satellite -14 1370 1 2 1696 411 159 11 0 chr4 145732282 145732370 -9897750 + Lx2 LINE L1 6331 6419 -578 2 1696 2093 208 9 2 chr4 145732370 145732824 -9897296 + Lx2 LINE L1 6541 6997 0 2 1696 431 205 24 97 chr4 145733659 145733681 -9896439 + MT2B LTR ERVL 143 155 -446 2 1696 878 95 3 8 chr4 145733681 145733829 -9896291 + B1_Mus2 SINE Alu 1 144 -5 2 1696 2162 95 184 16 chr4 145733837 145734213 -9895907 + RLTR44E LTR ERVK 1 439 -13 3 1696 306 158 0 17 chr4 145735065 145735123 -9894997 - Lx3A LINE L1 -847 6134 6078 3 1696 2910 154 35 4 chr4 145735139 145735647 -9894473 + Lx3A LINE L1 6451 6974 -7 3 1696 819 119 0 0 chr4 145735648 145735774 -9894346 + (GGGA)n Simple_repeat Simple_repeat 1 126 0 3 1696 433 265 8 25 chr4 145735859 145735979 -9894141 + RLTR25A LTR ERVK 683 800 -303 3 1696 1284 295 24 20 chr4 145736215 145736976 -9893144 + MMTV-int LTR ERVK 6484 7170 -83 3 1696 279 269 8 108 chr4 145737060 145737189 -9892931 + RLTR13D3 LTR ERVK 1 116 -998 3 1696 696 116 15 8 chr4 145738089 145738219 -9891901 + L1_Mus3 LINE L1 6504 6634 -4 3 1696 1117 162 5 0 chr4 145738219 145738404 -9891716 + RMER6A LTR ERVK 571 756 0 3 1696 691 312 112 11 chr4 145738551 145738998 -9891122 + Lx8 LINE L1 6464 6955 -518 3 1696 1737 187 19 50 chr4 145739098 145739521 -9890599 + RMER17C LTR ERVK 1 410 0 3 1696 615 208 173 13 chr4 145739523 145739679 -9890441 + RMER17C-int LTR ERVK 2 182 -3056 3 1696 206 205 0 0 chr4 145740069 145740108 -9890012 + CT-rich Low_complexity Low_complexity 1 39 0 3 1696 1236 194 219 28 chr4 145740469 145740893 -9889227 + RMER17C-int LTR ERVK 1509 2013 -1225 3 1696 2077 153 139 17 chr4 145741046 145741637 -9888483 + RMER17C-int LTR ERVK 2576 3238 0 3 1696 772 209 28 126 chr4 145741642 145741689 -9888431 + RMER17C LTR ERVK 185 227 -731 3 1696 4487 152 99 26 chr4 145741689 145742072 -9888048 + RMER17B LTR ERVK 1 399 -559 3 1696 627 14 0 0 chr4 145742072 145742144 -9887976 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1696 4487 152 99 26 chr4 145742144 145742649 -9887471 + RMER17B LTR ERVK 400 953 -5 3 1696 1664 168 10 87 chr4 145742649 145743081 -9887039 + RMER17C LTR ERVK 19 441 -517 3 1696 210 105 0 0 chr4 145745134 145745172 -9884948 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 1696 2261 224 99 78 chr4 145746462 145746671 -9883449 - RLTR40 LTR ERVK -10 807 583 3 1696 843 39 0 0 chr4 145746671 145746774 -9883346 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 1696 2261 224 99 78 chr4 145746774 145747334 -9882786 - RLTR40 LTR ERVK -235 582 22 3 1696 1434 185 271 35 chr4 145747547 145747920 -9882200 - RMER6B LTR ERVK 0 461 1 3 1696 434 252 89 43 chr4 145748278 145748621 -9881499 - RMER6C LTR ERVK -5 751 400 3 1696 873 206 5 73 chr4 145748539 145748759 -9881361 + RMER10B LTR ERVL 194 398 0 3 1696 1017 98 6 30 chr4 145749380 145749548 -9880572 + L1Md_F2 LINE L1 6417 6580 -2 3 1696 282 329 0 0 chr4 145749941 145750014 -9880106 - B3A SINE B2 -119 79 7 3 1696 21 0 0 0 chr4 145750180 145750201 -9879919 + AT_rich Low_complexity Low_complexity 1 21 0 3 1696 221 310 54 150 chr4 145750289 145750456 -9879664 + B4 SINE B4 73 223 -69 3 1696 456 281 7 41 chr4 145750316 145750461 -9879659 + B1_Mur1 SINE Alu 10 149 0 3 1696 3647 148 20 2 chr4 145750630 145751240 -9878880 + Lx LINE L1 6025 6645 -9 3 1696 351 362 31 8 chr4 145751887 145752015 -9878105 + B3 SINE B2 1 131 -85 3 1697 200 132 26 0 chr4 145752252 145752290 -9877830 + T-rich Low_complexity Low_complexity 1 39 0 3 1697 300 233 40 40 chr4 145752290 145752366 -9877754 - PB1D7 SINE Alu -27 93 18 3 1697 300 271 0 56 chr4 145752298 145752388 -9877732 - ID_B1 SINE B4 -58 166 82 3 1697 488 243 19 0 chr4 145752882 145752985 -9877135 + B1_Mur3 SINE Alu 31 135 -14 3 1697 1122 200 43 0 chr4 145752992 145753202 -9876918 - RLTR20D LTR ERVK -349 219 1 3 1697 448 279 155 32 chr4 145753276 145753554 -9876566 + MLT1B LTR MaLR 60 371 -19 3 1697 402 306 88 8 chr4 145753749 145753874 -9876246 + RSINE1 SINE B4 3 137 -28 3 1697 212 0 36 0 chr4 145753908 145753936 -9876184 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 3 1697 1123 289 41 32 chr4 145753943 145754283 -9875837 - MTEb LTR MaLR -36 343 1 3 1697 287 258 0 0 chr4 145755543 145755609 -9874511 + B3A SINE B2 2 67 -131 3 1697 1051 231 13 114 chr4 145755802 145756110 -9874010 + RLTR25B LTR ERVK 55 331 -697 3 1697 1670 140 64 4 chr4 145756141 145756421 -9873699 + RMER17B LTR ERVK 1 297 -661 3 1697 2888 228 47 8 chr4 145757157 145757798 -9872322 + RMER17B LTR ERVK 289 954 -4 3 1697 860 213 19 118 chr4 145757800 145758071 -9872049 + RLTR25B LTR ERVK 329 572 -531 3 1697 248 307 0 0 chr4 145758079 145758092 -9872028 + ORR1A3-int LTR MaLR 718 755 -1208 3 1697 298 340 68 0 chr4 145758092 145758195 -9871925 + B1_Mur3 SINE Alu 3 112 -37 3 1697 248 307 0 0 chr4 145758195 145758229 -9871891 + ORR1A3-int LTR MaLR 756 867 -1096 3 1697 7897 163 31 9 chr4 145758363 145760754 -9869366 + Lx3A LINE L1 4472 6923 -58 3 1697 313 75 38 0 chr4 145760969 145761022 -9869098 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1697 253 286 0 0 chr4 145761316 145761379 -9868741 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1697 417 387 47 19 chr4 145761984 145762563 -9867557 + L1M4 LINE L1 3803 4397 -1749 3 1697 330 324 14 14 chr4 145762570 145762714 -9867406 + Lx8 LINE L1 6469 6612 -861 3 1697 700 137 25 8 chr4 145762820 145762938 -9867182 + PB1D9 SINE Alu 1 120 0 3 1697 219 36 0 0 chr4 145762951 145762979 -9867141 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1697 34 42 0 0 chr4 145765300 145765348 -9864772 + AT_rich Low_complexity Low_complexity 1 48 0 3 1697 207 100 0 0 chr4 145765835 145765865 -9864255 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 1697 248 287 0 0 chr4 145766446 145766533 -9863587 + A-rich Low_complexity Low_complexity 1 87 0 3 1697 250 211 26 0 chr4 145766536 145766612 -9863508 + L1_Mur3 LINE L1 1352 1429 -4451 3 1697 270 193 0 0 chr4 145766701 145766758 -9863362 + A-rich Low_complexity Low_complexity 1 57 0 3 1697 1228 191 27 140 chr4 145767209 145767580 -9862540 - RLTR40 LTR ERVK -42 775 447 3 1697 278 214 57 0 chr4 145767574 145767644 -9862476 - RLTR40 LTR ERVK -743 74 1 3 1697 1089 319 70 2 chr4 145767766 145768196 -9861924 + Lx6 LINE L1 6174 6632 -828 3 1697 316 317 84 94 chr4 145768472 145768514 -9861606 + RLTR18 LTR ERVK 1 43 -469 3 1697 956 112 0 47 chr4 145768514 145768664 -9861456 + B1_Mm SINE Alu 2 144 -3 3 1697 201 74 0 0 chr4 145768664 145768691 -9861429 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1697 962 311 80 55 chr4 145768691 145768749 -9861371 + RLTR18 LTR ERVK 44 108 -404 3 1697 228 86 0 0 chr4 145768749 145768784 -9861336 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1697 962 307 78 31 chr4 145768784 145769194 -9860926 + RLTR18 LTR ERVK 105 530 -86 3 1697 12140 106 20 6 chr4 145769280 145771225 -9858895 + L1_Mm LINE L1 3167 5135 -748 3 1697 1418 58 5 31 chr4 145771225 145771419 -9858701 + B2_Mm1t SINE B2 2 190 -3 3 1697 12140 106 20 6 chr4 145771419 145771462 -9858658 + L1_Mm LINE L1 5136 5182 -701 3 1697 669 297 23 43 chr4 145821558 145821800 -9808320 - ID_B1 SINE B4 -50 242 7 3 1697 606 225 45 23 chr4 145821833 145821965 -9808155 - B3 SINE B2 -5 211 77 3 1697 540 30 0 0 chr4 145822204 145822270 -9807850 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1697 182 262 18 24 chr4 145822299 145822463 -9807657 + (TG)n Simple_repeat Simple_repeat 2 164 0 3 1697 1092 149 17 0 chr4 145822514 145822695 -9807425 + B2_Mm2 SINE B2 3 186 -9 3 1697 255 234 45 30 chr4 145822738 145822804 -9807316 + RSINE1 SINE B4 15 81 -84 3 1697 452 283 129 28 chr4 145822819 145822997 -9807123 + B3A SINE B2 3 198 0 3 1697 180 0 0 0 chr4 145823050 145823070 -9807050 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1697 265 307 6 25 chr4 145823260 145823357 -9806763 + PB1D10 SINE Alu 17 114 -6 3 1697 925 185 107 5 chr4 145823360 145823556 -9806564 + B3 SINE B2 1 216 0 3 1697 665 223 165 24 chr4 145823687 145823857 -9806263 + B3A SINE B2 1 194 -4 3 1697 3453 38 2 0 chr4 145824208 145824603 -9805517 + MTA_Mm LTR MaLR 1 396 0 3 1697 7236 21 0 3 chr4 145824603 145825461 -9804659 + MTA_Mm-int LTR MaLR 1 855 -243 3 1697 3962 54 2 32 chr4 145825461 145825958 -9804162 + LTRIS_Mm LTR ERV1 1 482 0 3 1697 13253 260 35 34 chr4 145825958 145831705 -9798415 + RLTR6-int LTR ERV1 1 5800 -1978 3 1697 555 348 19 17 chr4 145832453 145832873 -9797247 + RLTR6-int LTR ERV1 6400 7112 -666 3 1697 242 118 0 38 chr4 145833077 145833130 -9796990 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 3 1697 1302 38 0 0 chr4 145833135 145833295 -9796825 + (TCTCCC)n Simple_repeat Simple_repeat 3 162 0 3 1697 288 261 43 14 chr4 145833308 145833378 -9796742 - B1_Mus1 SINE Alu -64 84 13 3 1697 2898 68 42 0 chr4 145833890 145834270 -9795850 - MTA_Mm LTR MaLR 0 396 1 3 1697 2835 12 3 0 chr4 145834489 145834810 -9795310 - RLTRETN_Mm LTR ERVK 0 322 1 3 1697 351 0 0 0 chr4 145834956 145834995 -9795125 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1697 559 186 331 10 chr4 145835717 145835858 -9794262 + B3 SINE B2 1 186 -30 3 1697 480 18 0 0 chr4 145835858 145835915 -9794205 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1697 311 217 14 28 chr4 145835915 145835934 -9794186 + B3 SINE B2 187 205 -11 3 1697 800 156 48 30 chr4 145836161 145836326 -9793794 + URR1A DNA MER1_type 57 224 -2 3 1697 1326 89 5 21 chr4 145836506 145836700 -9793420 + B2_Mm1a SINE B2 1 191 -2 3 1697 298 254 28 0 chr4 145836757 145836828 -9793292 + B3A SINE B2 1 73 -125 3 1697 25 31 0 0 chr4 145836876 145836908 -9793212 + AT_rich Low_complexity Low_complexity 1 32 0 3 1697 546 282 37 49 chr4 145836923 145837087 -9793033 + RSINE1 SINE B4 4 165 0 3 1697 932 99 152 0 chr4 145837132 145837283 -9792837 + B2_Mm2 SINE B2 2 175 -20 3 1697 281 265 28 2 chr4 145837476 145837556 -9792564 + B1_Mur1 SINE Alu 53 133 -16 3 1697 21 0 0 0 chr4 145837854 145837875 -9792245 + AT_rich Low_complexity Low_complexity 1 21 0 3 1697 691 127 407 11 chr4 145838054 145838313 -9791807 - LTRIS3 LTR ERV1 0 512 1 3 1697 292 73 0 0 chr4 145838314 145838355 -9791765 - RLTR6-int LTR ERV1 -1 7777 7737 3 1697 598 198 35 0 chr4 145838492 145838608 -9791512 - RMER16-int LTR ERVK -4600 806 687 3 1697 864 127 108 6 chr4 145838596 145838763 -9791357 - RMER16-int LTR ERVK -5082 324 141 3 1697 1250 41 0 0 chr4 145838768 145838915 -9791205 + B1_Mm SINE Alu 1 147 0 3 1697 210 37 0 0 chr4 145838948 145838975 -9791145 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3 1697 3729 19 30 69 chr4 145839376 145839870 -9790250 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1697 685 127 42 40 chr4 145840205 145840346 -9789774 - LTRIS5 LTR ERV1 0 564 305 3 1697 713 75 85 0 chr4 145840342 145840448 -9789672 - LTRIS5 LTR ERV1 -332 115 1 3 1697 470 292 223 0 chr4 145840448 145840648 -9789472 + B4A SINE B4 42 286 -6 3 1697 1454 75 5 0 chr4 145840863 145841051 -9789069 + B2_Mm1a SINE B2 1 189 -4 3 1697 207 0 0 0 chr4 145841375 145841398 -9788722 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1697 345 302 133 52 chr4 145841547 145841721 -9788399 - RMER15 LTR ERVL -19 556 356 3 1697 1987 121 9 38 chr4 145841721 145842039 -9788081 + RLTR27 LTR ERVK 1 309 0 3 1697 345 302 133 52 chr4 145842039 145842112 -9788008 - RMER15 LTR ERVL -220 355 289 3 1697 245 342 0 0 chr4 145842112 145842185 -9787935 + MTEa LTR MaLR 27 99 -280 4 1697 688 292 87 32 chr4 145842192 145842411 -9787709 + MT2A LTR ERVL 158 388 -145 4 1697 231 173 0 0 chr4 145843001 145843053 -9787067 + CT-rich Low_complexity Low_complexity 2 53 0 4 1697 270 136 0 0 chr4 145843623 145843667 -9786453 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1697 1173 75 0 0 chr4 145843670 145843817 -9786303 - B1_Mus2 SINE Alu 0 147 1 4 1697 295 153 23 23 chr4 145844726 145844813 -9785307 + L1_Mur2 LINE L1 3678 3764 -2113 4 1697 508 217 16 8 chr4 145844818 145844939 -9785181 - Lx7 LINE L1 -16 7680 7559 4 1697 262 325 36 0 chr4 145845267 145845350 -9784770 - RLTR18 LTR ERVK 0 512 427 4 1697 356 316 44 44 chr4 145845532 145845714 -9784406 - RMER21B LTR ERV1 -335 507 326 4 1697 1275 260 30 46 chr4 145845749 145846095 -9784025 - RLTR18 LTR ERVK -105 511 203 4 1697 1049 90 14 0 chr4 145846095 145846239 -9783881 - B1_Mus1 SINE Alu -1 147 2 4 1697 1275 285 49 80 chr4 145846239 145846444 -9783676 - RLTR18 LTR ERVK -414 202 1 4 1697 273 287 3 59 chr4 145846617 145846709 -9783411 + B1_Mm SINE Alu 26 116 -33 4 1697 366 231 0 0 chr4 145847318 145847409 -9782711 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1697 1175 305 65 0 chr4 145847437 145847870 -9782250 - Lx6 LINE L1 -826 6634 6174 4 1697 2138 218 68 120 chr4 145847990 145848758 -9781362 + RLTR40 LTR ERVK 1 728 -89 4 1697 1005 67 0 0 chr4 145849234 145849368 -9780752 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 4 1697 1615 21 21 0 chr4 145850179 145850367 -9779753 + B2_Mm1a SINE B2 2 193 0 4 1697 201 132 0 0 chr4 145850372 145850410 -9779710 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 4 1697 915 62 70 8 chr4 145851655 145851784 -9778336 - B1_Mus1 SINE Alu 0 148 12 4 1697 428 213 152 80 chr4 145851662 145851800 -9778320 - B4A SINE B4 -71 221 74 4 1697 360 359 103 11 chr4 145852333 145852781 -9777339 - Lx8 LINE L1 -519 6954 6466 4 1697 1685 224 35 25 chr4 145853080 145853479 -9776641 - RMER6A LTR ERVK 0 756 354 4 1697 220 191 0 0 chr4 145853680 145853722 -9776398 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 4 1697 756 306 86 28 chr4 145855871 145856335 -9773785 - Lx8 LINE L1 -519 6954 6464 4 1697 3259 121 14 6 chr4 145856497 145857004 -9773116 + L1_Mus3 LINE L1 6128 6638 0 4 1697 1970 189 12 88 chr4 145857151 145857361 -9772759 - RMER6A LTR ERVK 0 756 576 4 1697 697 112 173 16 chr4 145857361 145857488 -9772632 - B1_Mus1 SINE Alu 0 148 2 4 1697 1970 235 39 75 chr4 145857488 145858094 -9772026 - RMER6A LTR ERVK -126 630 56 4 1697 186 103 0 0 chr4 145858282 145858311 -9771809 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1697 266 244 13 0 chr4 145858647 145858725 -9771395 - L1MEg LINE L1 -4700 1384 1306 4 1697 405 309 77 10 chr4 145860182 145860391 -9769729 - Lx8 LINE L1 -763 6710 6488 4 1697 4974 146 3 13 chr4 145861260 145861581 -9768539 - L1_Mur1 LINE L1 -260 5626 5310 4 1697 3483 15 5 0 chr4 145861581 145861975 -9768145 + MTA_Mm LTR MaLR 1 396 0 4 1697 9586 15 3 0 chr4 145861975 145863070 -9767050 + MTA_Mm-int LTR MaLR 1 1098 0 4 1697 3427 18 8 0 chr4 145863070 145863463 -9766657 + MTA_Mm LTR MaLR 1 396 0 4 1697 4974 146 3 13 chr4 145863463 145864060 -9766060 - L1_Mur1 LINE L1 -577 5309 4717 4 1697 281 338 73 5 chr4 145864192 145864328 -9765792 - B1_Mur3 SINE Alu 0 147 3 4 1697 279 250 0 165 chr4 145864328 145864393 -9765727 - MT2B LTR ERVL -342 259 210 4 1697 1150 265 91 123 chr4 145864349 145864616 -9765504 - RLTR25A LTR ERVK -531 572 334 4 1697 4541 198 40 16 chr4 145864616 145865552 -9764568 - RMER17B LTR ERVK 0 958 1 4 1697 1150 265 91 123 chr4 145865552 145865821 -9764299 - RLTR25A LTR ERVK -770 333 53 4 1697 385 382 24 14 chr4 145865871 145866081 -9764039 - B3 SINE B2 -3 213 2 4 1697 1519 43 11 0 chr4 145866104 145866290 -9763830 - B2_Mm1a SINE B2 -5 188 1 4 1697 1037 89 7 7 chr4 145866815 145866962 -9763158 - B1_Mus2 SINE Alu 0 147 1 4 1697 789 335 38 31 chr4 145867690 145868007 -9762113 - ORR1D2 LTR MaLR -9 361 43 4 1697 430 320 0 15 chr4 145868141 145868271 -9761849 - B1_Mur2 SINE Alu -1 148 21 4 1697 216 330 0 120 chr4 145869189 145869306 -9760814 - ID_B1 SINE B4 -82 142 40 4 1697 315 167 0 0 chr4 145869985 145870051 -9760069 + GA-rich Low_complexity Low_complexity 2 67 0 4 1697 459 0 0 0 chr4 145871911 145871962 -9758158 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1697 416 299 113 0 chr4 145872170 145872364 -9757756 - B3 SINE B2 0 216 1 4 1697 3787 30 5 0 chr4 145872969 145873403 -9756717 - RLTR10C LTR ERVK 0 436 1 4 1697 7716 35 0 1 chr4 145873403 145874340 -9755780 - MMERVK10C-int LTR ERVK 0 7581 6646 4 1697 7244 36 0 0 chr4 145874326 145875210 -9754910 - MMERVK10C-int LTR ERVK -1771 5810 4927 4 1697 19536 41 0 1 chr4 145875208 145877631 -9752489 - MMERVK10C-int LTR ERVK -4292 3289 870 4 1697 2525 90 53 3 chr4 145877629 145878009 -9752111 - MMERVK10C-int LTR ERVK -7182 399 1 4 1697 3761 35 5 0 chr4 145878009 145878443 -9751677 - RLTR10C LTR ERVK 0 436 1 4 1697 4617 89 24 93 chr4 145878645 145879452 -9750668 - RMER17A LTR ERVK 0 751 1 4 1697 1115 82 0 7 chr4 145879542 145879681 -9750439 + B1_Mus1 SINE Alu 1 139 -9 4 1697 255 31 0 0 chr4 145879681 145879713 -9750407 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1698 309 329 32 38 chr4 145883531 145883689 -9746431 - B3 SINE B2 0 216 60 4 1698 393 132 20 5 chr4 145883768 145883882 -9746238 - B2_Mm2 SINE B2 -1 194 46 4 1698 979 137 68 0 chr4 145883913 145884074 -9746046 - B2_Mm2 SINE B2 -22 173 2 4 1698 3574 169 16 29 chr4 145885142 145885825 -9744295 - Lx2 LINE L1 -6 6991 6318 4 1698 1216 143 5 5 chr4 145886390 145888844 -9741276 + MMSAT4 Satellite Satellite 1 2453 0 4 1698 285 333 53 82 chr4 145889324 145889569 -9740551 + RMER15 LTR ERVL 255 492 -83 4 1698 180 133 16 32 chr4 145889863 145889925 -9740195 + A-rich Low_complexity Low_complexity 2 62 0 4 1698 564 15 0 0 chr4 145889974 145890039 -9740081 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1698 4659 207 27 8 chr4 145892386 145892516 -9737604 - Lx2B LINE L1 -402 6598 6467 4 1698 405 0 0 0 chr4 145892516 145892561 -9737559 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1698 4659 192 16 6 chr4 145892561 145893610 -9736510 - Lx2B LINE L1 -534 6466 5403 4 1698 480 252 14 7 chr4 145893604 145893744 -9736376 + MusHAL1 LINE L1 2106 2246 -466 4 1698 423 0 0 0 chr4 145894056 145894103 -9736017 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1698 5333 134 23 6 chr4 145894723 145895519 -9734601 + RMER17D2 LTR ERVK 1 809 0 4 1698 456 19 0 0 chr4 145895853 145895906 -9734214 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1698 432 0 0 0 chr4 145896352 145896400 -9733720 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1698 180 0 0 0 chr4 145896830 145896850 -9733270 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 4 1698 183 262 11 87 chr4 145897105 145897197 -9732923 + L2b LINE L2 3138 3222 -153 4 1698 647 222 57 128 chr4 145897722 145897949 -9732171 + B3 SINE B2 5 215 -1 4 1698 2027 42 8 0 chr4 145897958 145898198 -9731922 + L1Md_F2 LINE L1 5345 5586 -297 4 1698 8250 60 1 11 chr4 145898198 145899203 -9730917 + L1Md_F2 LINE L1 5587 6581 -1 4 1698 248 272 18 80 chr4 145899209 145899321 -9730799 + L1M3 LINE L1 5464 5568 -612 4 1698 1198 75 7 0 chr4 145899341 145899488 -9730632 + B1_Mus1 SINE Alu 1 148 0 4 1698 283 106 15 15 chr4 145899488 145899555 -9730565 + (CAAAAA)n Simple_repeat Simple_repeat 6 72 0 4 1698 807 236 7 0 chr4 145899558 145899706 -9730414 + B1_Mur4 SINE Alu 1 149 -1 4 1698 2364 162 19 13 chr4 145900134 145900510 -9729610 + ORR1C1 LTR MaLR 1 378 0 4 1698 3213 61 10 13 chr4 145901395 145901792 -9728328 - MTA_Mm LTR MaLR 0 396 1 4 1698 272 351 35 23 chr4 145903227 145903369 -9726751 - MIR3 SINE MIR -45 163 21 4 1698 21 0 0 0 chr4 145903671 145903692 -9726428 + AT_rich Low_complexity Low_complexity 1 21 0 4 1698 1250 104 39 0 chr4 145904245 145904427 -9725693 + L1_Mus2 LINE L1 6378 6566 0 4 1698 363 44 0 0 chr4 145904506 145904551 -9725569 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1698 947 204 34 29 chr4 145904821 145905028 -9725092 + MTC LTR MaLR 214 421 0 4 1698 239 299 188 20 chr4 145905825 145906075 -9724045 - MLT1E2 LTR MaLR -212 293 1 4 1698 631 209 96 15 chr4 145906610 145906746 -9723374 - B1F SINE Alu -2 147 1 4 1698 1132 180 120 0 chr4 145906808 145907008 -9723112 - URR1A DNA MER1_type -2 224 1 4 1698 210 346 130 9 chr4 145907128 145907344 -9722776 + L3 LINE CR1 3790 4031 -458 4 1698 405 0 0 0 chr4 145907412 145907457 -9722663 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1698 504 0 0 0 chr4 145907457 145907512 -9722608 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1698 259 286 0 83 chr4 145907523 145907606 -9722514 - B4A SINE B4 -14 278 203 4 1698 1627 192 70 39 chr4 145907606 145907964 -9722156 - RLTR17 LTR ERVK 0 692 324 4 1698 1158 200 20 0 chr4 145908153 145908348 -9721772 + B3 SINE B2 2 200 -16 4 1698 252 0 0 0 chr4 145908348 145908376 -9721744 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 4 1698 411 78 0 0 chr4 145908508 145908572 -9721548 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1698 23 33 0 0 chr4 145908633 145908663 -9721457 + AT_rich Low_complexity Low_complexity 1 30 0 4 1698 362 200 53 0 chr4 145909183 145909258 -9720862 - Lx6 LINE L1 -1237 6223 6145 4 1698 468 0 0 0 chr4 145909264 145909316 -9720804 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1698 798 247 124 110 chr4 145909558 145909857 -9720263 - MTEb LTR MaLR 0 379 76 4 1698 3335 185 35 16 chr4 145909857 145910487 -9719633 - RLTR26 LTR ERVK 0 642 1 4 1698 317 206 103 0 chr4 145910487 145910550 -9719570 - MTEb LTR MaLR -305 74 5 4 1698 3556 243 81 60 chr4 145911282 145912027 -9718093 + Lx9 LINE L1 6526 7335 -309 4 1698 280 135 38 19 chr4 145912027 145912080 -9718040 - RLTR26 LTR ERVK -316 326 273 4 1698 3556 243 81 60 chr4 145912080 145912175 -9717945 + Lx9 LINE L1 7336 7440 -204 4 1698 327 104 0 0 chr4 145912175 145912223 -9717897 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1698 3556 243 81 60 chr4 145912223 145912417 -9717703 + Lx9 LINE L1 7441 7636 -8 4 1698 331 302 81 0 chr4 145912448 145912534 -9717586 + B1F SINE Alu 1 93 -56 4 1698 590 113 10 0 chr4 145913293 145913390 -9716730 + (CATA)n Simple_repeat Simple_repeat 2 99 0 4 1698 219 139 0 0 chr4 145913928 145913964 -9716156 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1698 564 53 0 0 chr4 145914024 145914100 -9716020 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1698 2017 202 54 3 chr4 145914174 145914565 -9715555 - Lx6 LINE L1 -983 6477 6067 5 1698 834 196 85 14 chr4 145914553 145914757 -9715363 - Lx6 LINE L1 -174 6006 5755 4 1698 345 125 0 0 chr4 145915115 145915171 -9714949 + (TCC)n Simple_repeat Simple_repeat 2 57 0 5 1698 4567 186 20 17 chr4 145915898 145916798 -9713322 - L1_Mur3 LINE L1 -85 5795 4893 5 1698 4431 64 13 13 chr4 145917654 145918205 -9711915 + L1_Mus1 LINE L1 6017 6567 0 5 1698 15642 147 80 21 chr4 145918291 145922331 -9707789 - Lx4B LINE L1 -19 7039 2744 5 1698 14486 93 10 7 chr4 145922333 145924306 -9705814 + L1VL4 LINE L1 36 2019 -1540 5 1698 2951 52 6 0 chr4 145924306 145924650 -9705470 - ORR1A0 LTR MaLR 0 346 1 5 1698 14486 73 13 6 chr4 145924650 145925467 -9704653 + L1VL4 LINE L1 2020 2841 -718 5 1698 1249 201 75 8 chr4 145925467 145925733 -9704387 - ORR1C1 LTR MaLR -94 284 1 5 1698 1823 232 38 0 chr4 145926203 145926596 -9703524 + MT2A LTR ERVL 3 410 -123 5 1698 528 16 0 0 chr4 145926614 145926675 -9703445 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 5 1698 832 47 0 19 chr4 145926797 145926905 -9703215 - B1_Mus2 SINE Alu -1 146 41 5 1698 332 218 33 44 chr4 145926842 145926933 -9703187 - RLTR25B LTR ERVK -526 502 413 5 1698 846 269 123 63 chr4 145927300 145927617 -9702503 + ORR1D2 LTR MaLR 3 338 -32 5 1698 1839 242 63 6 chr4 145927854 145928349 -9701771 + ORR1D2-int LTR MaLR 11 533 -837 5 1698 557 191 44 0 chr4 145928356 145928474 -9701646 + B3 SINE B2 1 127 -66 5 1698 395 38 19 0 chr4 145928505 145928558 -9701562 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 5 1698 526 248 0 0 chr4 145928561 145928674 -9701446 + ORR1D2-int LTR MaLR 535 647 -723 5 1698 1082 240 140 16 chr4 145928702 145928933 -9701187 + ORR1D2 LTR MaLR 5 273 -97 5 1698 2043 165 41 14 chr4 145928933 145929295 -9700825 - ORR1D1 LTR MaLR -2 372 1 5 1698 1082 240 140 16 chr4 145929295 145929385 -9700735 + ORR1D2 LTR MaLR 274 366 -4 5 1698 1698 138 65 146 chr4 145929799 145930197 -9699923 - ORR1B1 LTR MaLR 0 394 29 5 1698 810 236 6 0 chr4 145930199 145930364 -9699756 + Lx6 LINE L1 6477 6642 -818 5 1698 235 204 0 0 chr4 145930364 145930413 -9699707 + Lx6 LINE L1 6953 7001 -459 5 1698 27 81 0 0 chr4 145930882 145930944 -9699176 + GC_rich Low_complexity Low_complexity 1 62 0 5 1698 1544 48 5 21 chr4 145931592 145931785 -9698335 + B2_Mm1a SINE B2 2 191 -2 5 1698 186 43 0 0 chr4 145933709 145933732 -9696388 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 5 1698 1206 89 0 0 chr4 145933745 145933902 -9696218 + B2_Mm2 SINE B2 5 161 -34 5 1698 513 0 0 0 chr4 145933902 145933959 -9696161 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 5 1698 2964 220 35 34 chr4 145933965 145934526 -9695594 + Lx7 LINE L1 6990 7543 -153 5 1698 858 70 0 0 chr4 145934526 145934640 -9695480 + (CAATA)n Simple_repeat Simple_repeat 2 115 0 5 1698 2964 220 35 34 chr4 145934640 145934784 -9695336 + Lx7 LINE L1 7544 7696 0 5 1698 1073 257 120 6 chr4 145934799 145935132 -9694988 + MTD LTR MaLR 1 371 -48 5 1698 439 137 17 17 chr4 145935162 145935281 -9694839 + (TCTG)n Simple_repeat Simple_repeat 2 120 0 5 1698 849 185 14 7 chr4 145935791 145935938 -9694182 + B1_Mur3 SINE Alu 1 148 -1 5 1698 353 261 16 102 chr4 145935951 145936079 -9694041 + RMER5 LTR ERV1 14 130 -404 5 1698 369 152 0 0 chr4 145936088 145936147 -9693973 - RMER1A Other Other -920 110 52 5 1698 2138 199 99 4 chr4 145936309 145936784 -9693336 - RMER5 LTR ERV1 0 534 15 5 1698 2102 232 48 21 chr4 145938928 145938946 -9691174 - RMER5 LTR ERV1 0 534 521 5 1698 1366 63 75 0 chr4 145938946 145939120 -9691000 + B2_Mm2 SINE B2 4 190 -5 5 1698 2102 232 48 21 chr4 145939120 145939621 -9690499 - RMER5 LTR ERV1 -14 520 1 5 1698 252 0 0 0 chr4 145939862 145939890 -9690230 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1698 1567 65 0 11 chr4 145940308 145940494 -9689626 + B2_Mm1t SINE B2 2 185 -8 5 1698 1299 234 206 84 chr4 145941217 145941300 -9688820 + MT2A LTR ERVL 1 81 -452 5 1698 240 35 0 0 chr4 145941300 145941329 -9688791 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1698 1299 234 206 84 chr4 145941329 145941440 -9688680 + MT2A LTR ERVL 82 177 -356 5 1698 468 0 0 0 chr4 145941440 145941492 -9688628 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1698 1299 234 206 84 chr4 145941492 145941771 -9688349 + MT2A LTR ERVL 178 531 -2 5 1698 1273 228 19 11 chr4 145942009 145942275 -9687845 + RMER5 LTR ERV1 23 290 -244 5 1698 2395 102 6 12 chr4 145942328 145942657 -9687463 - ORR1A4 LTR MaLR -2 327 1 5 1698 410 271 88 31 chr4 145942677 145942905 -9687215 - RMER17C LTR ERVK -47 363 123 5 1698 521 117 0 0 chr4 145943038 145943115 -9687005 + RMER5 LTR ERV1 458 534 0 5 1698 256 245 50 112 chr4 145943158 145943319 -9686801 + MER4B-int LTR ERV1 50 200 -6558 5 1698 996 184 122 15 chr4 145943800 145943942 -9686178 + URR1A DNA MER1_type 1 167 -59 5 1698 3180 63 2 2 chr4 145943942 145944338 -9685782 - MTA_Mm LTR MaLR 0 396 1 5 1698 996 184 122 15 chr4 145944338 145944399 -9685721 + URR1A DNA MER1_type 168 226 0 5 1698 1015 198 15 10 chr4 145944464 145944663 -9685457 + Lx5 LINE L1 6841 7040 -10 5 1698 1490 63 21 0 chr4 145944858 145945047 -9685073 - B2_Mm1t SINE B2 0 193 1 5 1698 855 98 0 0 chr4 145945047 145945170 -9684950 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 5 1698 617 91 0 0 chr4 145945481 145945569 -9684551 + Lx2 LINE L1 6556 6643 -354 5 1698 1143 140 65 0 chr4 145945569 145945783 -9684337 + Lx LINE L1 6427 6654 0 5 1698 225 0 0 0 chr4 145945902 145945927 -9684193 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1698 1278 139 243 26 chr4 145946919 145947352 -9682768 + RMER5 LTR ERV1 1 527 -7 5 1698 5119 112 3 24 chr4 145947747 145948607 -9681513 - L1_Mur1 LINE L1 -366 5520 4679 5 1698 6564 162 4 66 chr4 145948609 145948858 -9681262 + L1_Mur1 LINE L1 3066 3268 -2609 5 1698 1226 41 0 0 chr4 145948858 145949005 -9681115 + B1_Mm SINE Alu 1 147 0 5 1698 7639 99 4 14 chr4 145949005 145950236 -9679884 + L1_Mur1 LINE L1 3254 4463 -1423 5 1698 958 97 18 18 chr4 145950231 145950399 -9679721 + L1_Mus3 LINE L1 6469 6636 -2 5 1698 1518 101 0 0 chr4 145950414 145950641 -9679479 + L1_Mur1 LINE L1 4449 4675 -1211 5 1698 288 252 17 25 chr4 145950701 145950819 -9679301 - L1_Rod LINE L1 -36 5811 5695 5 1698 1434 175 15 0 chr4 145950830 145951099 -9679021 - Lx3B LINE L1 -525 6448 6176 5 1698 3893 143 29 10 chr4 145951091 145951827 -9678293 - Lx4A LINE L1 -750 6308 5545 5 1698 279 0 0 0 chr4 145951827 145951858 -9678262 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1698 2408 144 54 5 chr4 145951858 145951989 -9678131 - Lx4A LINE L1 -333 5544 5409 5 1698 2427 177 12 4 chr4 145952000 145952506 -9677614 + L1_Mur2 LINE L1 4815 5324 -553 5 1698 527 289 43 25 chr4 145952520 145952725 -9677395 - RMER1A Other Other -845 185 19 5 1698 1305 116 5 0 chr4 145952725 145952914 -9677206 - BGLII LTR ERVK -231 190 1 5 1698 1362 232 31 33 chr4 145952915 145953369 -9676751 - RMER3D-int LTR ERVK -1 2841 2389 5 1698 478 77 13 0 chr4 145953384 145953462 -9676658 - L1Md_F2 LINE L1 -2 6580 6502 5 1698 27 0 0 0 chr4 145953707 145953734 -9676386 + GC_rich Low_complexity Low_complexity 1 27 0 5 1698 207 191 0 0 chr4 145954615 145954678 -9675442 + T-rich Low_complexity Low_complexity 1 63 0 5 1698 1070 90 0 0 chr4 145954691 145954835 -9675285 - B1_Mm SINE Alu -2 145 2 5 1698 230 0 33 0 chr4 145955263 145955293 -9674827 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1698 1060 67 0 7 chr4 145955294 145955430 -9674690 - B1_Mm SINE Alu -12 135 1 5 1698 252 310 42 0 chr4 145955729 145955800 -9674320 - RLTR18B LTR ERVK -7 505 432 5 1698 273 332 113 74 chr4 145955951 145956166 -9673954 - RMER21B LTR ERV1 -278 564 341 5 1698 1293 310 77 44 chr4 145956166 145956760 -9673360 - RLTR18 LTR ERVK -2 614 1 5 1698 298 239 3 70 chr4 145956933 145957025 -9673095 + B1_Mm SINE Alu 26 116 -33 5 1698 1161 307 65 2 chr4 145957665 145958099 -9672021 - Lx6 LINE L1 -826 6634 6174 5 1698 2364 226 79 72 chr4 145958232 145959001 -9671119 + RLTR40 LTR ERVK 1 775 -42 5 1698 1322 83 0 13 chr4 145959472 145959777 -9670343 + (TTTC)n Simple_repeat Simple_repeat 1 301 0 5 1698 21 0 0 0 chr4 145960031 145960052 -9670068 + AT_rich Low_complexity Low_complexity 1 21 0 5 1698 276 130 0 0 chr4 145960584 145960630 -9669490 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 5 1698 2103 151 104 130 chr4 145961552 145962129 -9667991 - LTRIS2 LTR ERV1 0 564 3 5 1698 520 331 108 14 chr4 145963620 145963981 -9666139 - Lx8 LINE L1 -602 6871 6477 5 1698 1179 55 0 0 chr4 145964289 145964435 -9665685 - B1_Mm SINE Alu 0 147 2 5 1698 2557 231 19 111 chr4 145964461 145965229 -9664891 - RMER6A LTR ERVK -2 754 57 5 1698 1077 116 0 0 chr4 145965691 145965838 -9664282 - B1_Mus1 SINE Alu -1 147 1 5 1698 239 241 0 0 chr4 145965927 145965985 -9664135 - L1MDa LINE L1 -4741 1892 1835 5 1698 719 65 187 0 chr4 145967205 145967328 -9662792 - B2_Mm2 SINE B2 0 195 50 5 1699 482 130 102 31 chr4 146017376 146017503 -9612617 + MMSAT4 Satellite Satellite 26 161 -7 1 1699 468 351 74 10 chr4 146018077 146018376 -9611744 + RMER15 LTR ERVL 241 558 -17 2 1699 339 253 48 12 chr4 146018449 146018533 -9611587 + URR1B DNA MER1_type 7 93 -132 3 1699 29 28 0 0 chr4 146020751 146020787 -9609333 + AT_rich Low_complexity Low_complexity 1 36 0 4 1699 5369 89 95 7 chr4 146020791 146022090 -9608030 - L1_Mus2 LINE L1 0 6566 5150 5 1699 5368 91 5 1 chr4 146022089 146022884 -9607236 + L1_Mm LINE L1 4055 4852 -1031 6 1699 264 254 19 152 chr4 146022901 146023059 -9607061 + B2_Mm2 SINE B2 59 195 0 7 1699 4206 225 28 16 chr4 146023622 146024447 -9605673 - L1_Mur2 LINE L1 -670 5207 4375 8 1699 489 34 0 0 chr4 146024447 146024506 -9605614 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 9 1699 4206 225 28 16 chr4 146024506 146024832 -9605288 - L1_Mur2 LINE L1 -1503 4374 4044 8 1699 4839 241 24 22 chr4 146024832 146025996 -9604124 - MYSERV6-int LTR ERVK -5092 3867 2689 1 1699 234 0 0 0 chr4 146025996 146026022 -9604098 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1699 4839 241 24 22 chr4 146026022 146026175 -9603945 - MYSERV6-int LTR ERVK -6271 2688 2548 1 1699 2931 62 0 0 chr4 146027524 146027880 -9602240 + IAPEY2_LTR LTR ERVK 1 356 -1 1 1699 670 146 50 50 chr4 146027881 146028040 -9602080 + IAPLTR4_I LTR ERVK 22 180 -1290 1 1699 8538 131 11 41 chr4 146028039 146029295 -9600825 + IAPEY3-int LTR ERVK 524 1739 -5941 1 1699 2658 43 6 21 chr4 146029295 146029627 -9600493 - IAPLTR2b LTR ERVK 0 327 1 1 1699 8538 131 11 41 chr4 146029627 146029874 -9600246 + IAPEY3-int LTR ERVK 1740 1982 -5698 1 1699 3244 78 11 0 chr4 146029851 146030298 -9599822 + IAPEY3-int LTR ERVK 2238 2689 -4991 1 1699 228 360 44 0 chr4 146030313 146030427 -9599693 + L3b LINE CR1 335 453 -29 1 1699 2737 119 15 31 chr4 146030427 146031083 -9599037 + IAPEY3-int LTR ERVK 6984 7581 0 1 1699 3056 48 0 0 chr4 146031083 146031440 -9598680 + IAPEY2_LTR LTR ERVK 1 357 0 1 1699 210 86 0 0 chr4 146032779 146032800 -9597320 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1699 1121 82 0 0 chr4 146032800 146032947 -9597173 - B1_Mm SINE Alu 0 147 1 1 1699 210 86 0 0 chr4 146032947 146032960 -9597160 + (T)n Simple_repeat Simple_repeat 1 13 0 1 1699 1110 245 126 40 chr4 146033114 146033518 -9596602 - RMER10A LTR ERVL -3 439 1 2 1699 629 207 20 20 chr4 146033615 146033812 -9596308 + Lx2B LINE L1 6016 6212 -788 2 1699 759 145 7 37 chr4 146033812 146033948 -9596172 + ORR1A3 LTR MaLR 183 314 -12 2 1699 33 0 0 0 chr4 146035427 146035460 -9594660 + AT_rich Low_complexity Low_complexity 1 33 0 2 1699 689 163 0 0 chr4 146039237 146039360 -9590760 - Lx LINE L1 -619 6035 5913 2 1699 3885 122 14 2 chr4 146039360 146039949 -9590171 + Lx LINE L1 6043 6638 -16 2 1699 540 0 0 0 chr4 146040168 146040228 -9589892 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1699 5326 191 44 42 chr4 146041212 146042321 -9587799 - RLTR13D3 LTR ERVK 0 1114 4 2 1699 1130 111 12 0 chr4 146042522 146042693 -9587427 + B2_Mm2 SINE B2 4 176 -19 2 1699 698 246 75 38 chr4 146042698 146042884 -9587236 + B3 SINE B2 24 216 0 2 1699 21 71 0 0 chr4 146042903 146042945 -9587175 + AT_rich Low_complexity Low_complexity 1 42 0 2 1699 193 312 61 44 chr4 146043317 146043431 -9586689 - L2a LINE L2 -6 3420 3305 3 1699 747 212 29 0 chr4 146043764 146043901 -9586219 + B1_Mus2 SINE Alu 2 142 -5 3 1699 180 0 0 0 chr4 146043907 146043927 -9586193 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1699 279 243 0 51 chr4 146044207 146044285 -9585835 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 3 1699 343 219 40 14 chr4 146044215 146044289 -9585831 - ID4_ SINE ID -5 78 3 3 1699 254 232 36 0 chr4 146044252 146044308 -9585812 - ZP3AR Satellite Satellite -131 81 24 3 1699 779 171 50 0 chr4 146044398 146044538 -9585582 + B1_Mus2 SINE Alu 1 147 0 3 1699 831 224 33 33 chr4 146044551 146044763 -9585357 - B3 SINE B2 -4 212 1 3 1699 214 278 59 49 chr4 146044766 146044868 -9585252 + MIR SINE MIR 125 227 -35 3 1699 638 296 19 37 chr4 146045013 146045227 -9584893 - ID_B1 SINE B4 -2 222 13 3 1699 846 218 34 34 chr4 146045269 146045478 -9584642 - B3 SINE B2 -7 209 1 4 1699 3986 208 182 40 chr4 146045720 146046706 -9583414 - L1_Mur2 LINE L1 -1062 4815 3823 4 1699 2948 179 21 33 chr4 146046706 146047314 -9582806 + MT2B LTR ERVL 1 601 0 4 1699 3986 208 182 40 chr4 146047314 146047328 -9582792 - L1_Mur2 LINE L1 -2055 3822 3814 4 1699 740 164 43 48 chr4 146047328 146047514 -9582606 - B2_Mm2 SINE B2 -8 187 3 4 1699 3986 208 182 40 chr4 146047514 146047648 -9582472 - L1_Mur2 LINE L1 -2064 3813 3463 4 1699 1131 88 0 0 chr4 146047648 146047795 -9582325 - B1_Mm SINE Alu 0 147 1 4 1699 3986 208 182 40 chr4 146047795 146048139 -9581981 - L1_Mur2 LINE L1 -2415 3462 3124 4 1699 475 273 48 12 chr4 146048170 146048337 -9581783 - Lx2B LINE L1 -6 6994 6822 4 1699 2408 151 18 18 chr4 146048454 146048892 -9581228 - BGLII_B LTR ERVK 0 441 4 4 1699 5246 243 126 87 chr4 146048962 146052482 -9577638 - MYSERV6-int LTR ERVK -1924 4626 30 4 1699 807 153 13 46 chr4 146052502 146052514 -9577606 - B1_Mus1 SINE Alu -1 147 138 4 1699 252 0 0 0 chr4 146052514 146052542 -9577578 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1699 807 153 13 46 chr4 146052542 146052680 -9577440 - B1_Mus1 SINE Alu -11 137 2 4 1699 312 244 0 13 chr4 146052696 146052775 -9577345 - MYSERV6-int LTR ERVK -5854 3105 3028 4 1699 1925 118 3 58 chr4 146052786 146053128 -9576992 - BGLII_B LTR ERVK -118 323 1 5 1699 5062 181 50 35 chr4 146053506 146054604 -9575516 - RLTR13D3 LTR ERVK 0 1114 1 5 1699 306 50 0 0 chr4 146055690 146055730 -9574390 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 1699 400 240 36 101 chr4 146056059 146056078 -9574042 + MT2B LTR ERVL 149 158 -443 5 1699 907 148 7 21 chr4 146056078 146056223 -9573897 + B1_Mus1 SINE Alu 1 143 -5 5 1699 1156 133 17 0 chr4 146056411 146056591 -9573529 + B2_Mm2 SINE B2 1 183 -12 5 1699 385 130 29 29 chr4 146058542 146058645 -9571475 + L1_Mur2 LINE L1 3662 3764 -2113 5 1699 365 268 18 9 chr4 146058643 146058756 -9571364 - Lx6 LINE L1 -24 7436 7323 5 1699 216 86 0 0 chr4 146058758 146058793 -9571327 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1699 271 325 36 0 chr4 146059121 146059204 -9570916 - RLTR18 LTR ERVK 0 512 427 5 1699 452 286 38 38 chr4 146059386 146059571 -9570549 - RMER21B LTR ERV1 -335 507 323 6 1699 1413 255 74 41 chr4 146059603 146060134 -9569986 - RLTR18 LTR ERVK -105 511 1 5 1699 1563 49 0 0 chr4 146060213 146060398 -9569722 - B2_Mm1t SINE B2 -7 186 2 6 1699 2138 131 169 24 chr4 146060435 146060856 -9569264 - RLTR45 LTR ERVK 0 482 1 6 1699 270 280 0 62 chr4 146060927 146061007 -9569113 + B1_Mm SINE Alu 26 100 -47 6 1699 534 143 0 0 chr4 146061627 146061718 -9568402 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1699 999 305 17 3 chr4 146061746 146062108 -9568012 - Lx6 LINE L1 -826 6634 6268 5 1699 1932 235 102 112 chr4 146062295 146063109 -9567011 + RLTR40 LTR ERVK 1 806 -11 6 1699 546 133 0 0 chr4 146063572 146063662 -9566458 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 6 1699 192 97 0 0 chr4 146064467 146064498 -9565622 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 6 1699 198 103 0 0 chr4 146064500 146064529 -9565591 + (CAAG)n Simple_repeat Simple_repeat 3 31 0 6 1699 1451 48 27 5 chr4 146064919 146064946 -9565174 - B2_Mm1t SINE B2 -1 192 161 6 1699 203 0 0 36 chr4 146064946 146064974 -9565146 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1699 1451 48 27 5 chr4 146064974 146065133 -9564987 - B2_Mm1t SINE B2 -33 160 2 6 1699 1267 102 16 5 chr4 146065392 146065580 -9564540 - B2_Mm1t SINE B2 -2 191 2 7 1699 200 35 35 0 chr4 146065998 146066027 -9564093 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 7 1699 1133 88 0 0 chr4 146066654 146066802 -9563318 - B1_Mus1 SINE Alu 0 148 1 7 1699 517 326 112 20 chr4 146067352 146067800 -9562320 - Lx8 LINE L1 -519 6954 6466 7 1699 1662 229 47 3 chr4 146068098 146068247 -9561873 - RMER6A LTR ERVK 0 756 608 7 1699 1108 86 0 0 chr4 146068247 146068386 -9561734 - B1_Mus2 SINE Alu -7 140 2 7 1699 1662 229 47 3 chr4 146068386 146068622 -9561498 - RMER6A LTR ERVK -149 607 355 7 1699 204 214 0 0 chr4 146068822 146068864 -9561256 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 7 1699 819 317 73 15 chr4 146071026 146071490 -9558630 - Lx8 LINE L1 -519 6954 6464 7 1699 3153 144 8 4 chr4 146071652 146072161 -9557959 + L1_Mus3 LINE L1 6128 6638 0 7 1699 1869 188 42 89 chr4 146072300 146072509 -9557611 - RMER6A LTR ERVK -1 755 580 8 1699 804 72 173 16 chr4 146072509 146072636 -9557484 - B1_Mus1 SINE Alu 0 148 2 8 1699 1869 233 45 62 chr4 146072636 146073227 -9556893 - RMER6A LTR ERVK -177 579 56 8 1699 235 269 13 0 chr4 146073728 146073806 -9556314 - L1MEg LINE L1 -4700 1384 1306 8 1699 6060 147 16 11 chr4 146074781 146076590 -9553530 - Lx3B LINE L1 -293 6680 4860 8 1699 3030 20 9 0 chr4 146076994 146077337 -9552783 + ORR1A0 LTR MaLR 1 346 0 8 1699 28 48 0 0 chr4 146077348 146077390 -9552730 + AT_rich Low_complexity Low_complexity 1 42 0 8 1699 444 351 73 15 chr4 146077417 146077813 -9552307 + Tigger1 DNA MER2_type 1712 2130 -288 8 1699 586 322 14 28 chr4 146077897 146078108 -9552012 + B3 SINE B2 9 216 0 8 1699 404 278 55 72 chr4 146079092 146079368 -9550752 - RLTR25B LTR ERVK 0 1028 700 8 1699 252 86 0 0 chr4 146079513 146079548 -9550572 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 8 1699 6166 145 64 86 chr4 146079551 146080919 -9549201 - Lx3A LINE L1 -6 6975 5639 9 1699 441 54 0 0 chr4 146080947 146081003 -9549117 + (TATG)n Simple_repeat Simple_repeat 1 56 0 9 1699 495 283 0 10 chr4 146081027 146081127 -9548993 + B3A SINE B2 25 123 -75 9 1699 198 0 0 0 chr4 146081323 146081345 -9548775 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1699 4085 112 164 4 chr4 146081418 146082203 -9547917 - L1_Mur1 LINE L1 -259 5627 4717 9 1699 2137 91 27 0 chr4 146082429 146082727 -9547393 + L1_Mus1 LINE L1 6249 6554 -13 9 1699 24 32 0 0 chr4 146082752 146082783 -9547337 + AT_rich Low_complexity Low_complexity 1 31 0 9 1699 823 331 24 67 chr4 146083799 146084171 -9545949 - ORR1D2 LTR MaLR -8 362 7 9 1699 281 258 27 134 chr4 146084268 146084380 -9545740 - B1_Mur2 SINE Alu 0 149 21 9 1699 528 45 0 0 chr4 146084400 146084467 -9545653 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 9 1699 714 60 0 0 chr4 146085053 146085153 -9544967 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1699 24 53 0 0 chr4 146086720 146086758 -9543362 + AT_rich Low_complexity Low_complexity 1 38 0 1 1699 229 350 87 13 chr4 146087197 146087495 -9542625 + Tigger1 DNA MER2_type 1720 2039 -379 1 1699 741 80 9 9 chr4 146087517 146087630 -9542490 - B2_Mm1t SINE B2 -7 186 74 1 1699 400 327 18 25 chr4 146088203 146088366 -9541754 - B3 SINE B2 0 216 55 1 1699 1247 120 22 0 chr4 146088395 146088579 -9541541 + B2_Mm2 SINE B2 2 189 -6 1 1699 1134 26 33 0 chr4 146088695 146088847 -9541273 + (TTCTC)n Simple_repeat Simple_repeat 4 160 0 1 1699 1056 96 0 33 chr4 146089050 146089201 -9540919 - B1_Mus2 SINE Alu 0 147 2 1 1699 2195 196 26 4 chr4 146090096 146090551 -9539569 - Lx2 LINE L1 0 6997 6533 1 1699 4991 87 34 7 chr4 146090576 146091279 -9538841 - L1Md_F2 LINE L1 0 6582 5861 1 1699 351 0 0 0 chr4 146091415 146091454 -9538666 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1699 1325 118 1 0 chr4 146091939 146093473 -9536647 + MMSAT4 Satellite Satellite 1 1534 0 1 1699 335 220 165 0 chr4 146093985 146094094 -9536026 + RMER15 LTR ERVL 432 558 -17 1 1699 367 256 44 11 chr4 146094162 146094253 -9535867 + URR1B DNA MER1_type 3 96 -129 1 1699 1269 111 28 0 chr4 146094669 146094850 -9535270 + B2_Mm1t SINE B2 2 187 -6 1 1699 647 296 25 45 chr4 146095354 146095596 -9534524 - ID_B1 SINE B4 -50 242 7 1 1699 607 225 45 23 chr4 146095629 146095761 -9534359 - B3 SINE B2 -5 211 77 1 1699 180 0 0 0 chr4 146095915 146095935 -9534185 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1699 576 29 0 0 chr4 146096007 146096077 -9534043 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1699 182 262 18 24 chr4 146096106 146096270 -9533850 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1699 1049 155 17 0 chr4 146096321 146096502 -9533618 + B2_Mm2 SINE B2 3 186 -9 1 1699 257 234 45 30 chr4 146096545 146096611 -9533509 + RSINE1 SINE B4 15 81 -84 1 1699 411 291 146 0 chr4 146096626 146096784 -9533336 + B3A SINE B2 3 183 -15 1 1699 192 158 0 0 chr4 146096790 146096828 -9533292 + A-rich Low_complexity Low_complexity 1 38 0 1 1699 275 288 12 36 chr4 146097052 146097158 -9532962 + PB1D10 SINE Alu 13 114 -6 1 1699 910 173 113 0 chr4 146097161 146097346 -9532774 + B3 SINE B2 1 206 -10 1 1699 638 211 165 24 chr4 146097488 146097658 -9532462 + B3A SINE B2 1 194 -4 1 1699 3365 40 2 0 chr4 146098009 146098404 -9531716 + MTA_Mm LTR MaLR 1 396 0 1 1699 7060 20 1 3 chr4 146098404 146099261 -9530859 + MTA_Mm-int LTR MaLR 1 855 -243 1 1699 3954 46 2 32 chr4 146099261 146099758 -9530362 + LTRIS_Mm LTR ERV1 1 482 0 1 1699 12494 201 21 33 chr4 146099758 146105436 -9524684 + MuRRS-int LTR ERV1 1 5635 -1921 1 1699 476 339 43 50 chr4 146106191 146106631 -9523489 + MuLV-int LTR ERV1 6567 7112 -666 1 1699 250 103 0 65 chr4 146106802 146106864 -9523256 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 1 1699 438 94 0 0 chr4 146106860 146106924 -9523196 + (TCTCCC)n Simple_repeat Simple_repeat 3 66 0 1 1699 288 261 43 14 chr4 146106937 146107007 -9523113 - B1_Mus1 SINE Alu -64 84 13 1 1699 2885 71 42 0 chr4 146107519 146107899 -9522221 - MTA_Mm LTR MaLR 0 396 1 1 1699 2777 22 3 0 chr4 146108118 146108439 -9521681 - RLTRETN_Mm LTR ERVK 0 322 1 1 1699 246 32 0 0 chr4 146108585 146108616 -9521504 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1699 222 267 101 34 chr4 146109175 146109264 -9520856 + PB1D10 SINE Alu 6 100 -20 1 1699 559 186 331 10 chr4 146109338 146109479 -9520641 + B3 SINE B2 1 186 -30 1 1699 342 61 0 0 chr4 146109479 146109528 -9520592 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1699 311 217 14 28 chr4 146109528 146109547 -9520573 + B3 SINE B2 187 205 -11 1 1699 800 156 48 30 chr4 146109774 146109939 -9520181 + URR1A DNA MER1_type 57 224 -2 1 1699 1280 100 5 21 chr4 146110119 146110313 -9519807 + B2_Mm1a SINE B2 1 191 -2 1 1699 298 254 28 0 chr4 146110370 146110441 -9519679 + B3A SINE B2 1 73 -125 1 1699 26 30 0 0 chr4 146110489 146110522 -9519598 + AT_rich Low_complexity Low_complexity 1 33 0 1 1699 546 282 37 49 chr4 146110537 146110701 -9519419 + RSINE1 SINE B4 4 165 0 1 1699 932 99 152 0 chr4 146110746 146110897 -9519223 + B2_Mm2 SINE B2 2 175 -20 1 1699 298 266 26 14 chr4 146111090 146111178 -9518942 + B1_Mur1 SINE Alu 53 140 -9 1 1699 21 0 0 0 chr4 146111468 146111489 -9518631 + AT_rich Low_complexity Low_complexity 1 21 0 1 1699 691 115 402 11 chr4 146111668 146111928 -9518192 - LTRIS3 LTR ERV1 0 512 1 1 1699 292 73 0 0 chr4 146111929 146111970 -9518150 - RLTR6-int LTR ERV1 -1 7777 7737 1 1699 598 198 35 0 chr4 146112107 146112223 -9517897 - RMER16-int LTR ERVK -4600 806 687 1 1699 864 127 108 6 chr4 146112211 146112378 -9517742 - RMER16-int LTR ERVK -5082 324 141 1 1699 1250 41 0 0 chr4 146112383 146112530 -9517590 + B1_Mm SINE Alu 1 147 0 1 1699 198 103 0 0 chr4 146112530 146112559 -9517561 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1699 3705 24 30 69 chr4 146112978 146113472 -9516648 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1699 703 121 41 30 chr4 146113807 146113947 -9516173 - LTRIS2 LTR ERV1 0 564 305 1 1699 703 85 85 0 chr4 146113943 146114049 -9516071 - LTRIS2 LTR ERV1 -332 115 1 1 1699 485 298 151 19 chr4 146114049 146114247 -9515873 + B4A SINE B4 61 286 -6 1 1699 1451 64 5 11 chr4 146114462 146114651 -9515469 + B2_Mm1a SINE B2 1 188 -5 1 1699 279 0 0 0 chr4 146114975 146115006 -9515114 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1699 362 298 133 52 chr4 146115155 146115329 -9514791 - RMER15 LTR ERVL -19 556 356 1 1699 1971 121 9 38 chr4 146115329 146115647 -9514473 + RLTR27 LTR ERVK 1 309 0 1 1699 362 298 133 52 chr4 146115647 146115720 -9514400 - RMER15 LTR ERVL -220 355 289 1 1699 245 342 0 0 chr4 146115720 146115793 -9514327 + MTEa LTR MaLR 27 99 -280 1 1699 688 292 87 32 chr4 146115800 146116019 -9514101 + MT2A LTR ERVL 158 388 -145 1 1699 264 154 0 0 chr4 146116609 146116661 -9513459 + CT-rich Low_complexity Low_complexity 2 53 0 1 1699 276 130 0 0 chr4 146117231 146117277 -9512843 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1699 1132 75 7 0 chr4 146117280 146117426 -9512694 - B1_Mus2 SINE Alu 0 147 1 1 1699 310 141 23 23 chr4 146118337 146118424 -9511696 + L1_Mur2 LINE L1 3678 3764 -2113 1 1699 508 217 16 8 chr4 146118429 146118550 -9511570 - Lx7 LINE L1 -16 7680 7559 1 1699 262 325 36 0 chr4 146118878 146118961 -9511159 - RLTR18 LTR ERVK 0 512 427 1 1699 356 316 44 44 chr4 146119143 146119325 -9510795 - RMER21B LTR ERV1 -335 507 326 1 1699 1257 254 33 49 chr4 146119360 146119706 -9510414 - RLTR18 LTR ERVK -105 511 202 1 1699 1049 90 14 0 chr4 146119706 146119850 -9510270 - B1_Mus1 SINE Alu -1 147 2 1 1699 1257 282 49 80 chr4 146119850 146120055 -9510065 - RLTR18 LTR ERVK -415 201 1 1 1699 273 287 3 59 chr4 146120228 146120320 -9509800 + B1_Mm SINE Alu 26 116 -33 1 1699 425 206 0 10 chr4 146120921 146121024 -9509096 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 1 1699 1161 307 65 0 chr4 146121052 146121485 -9508635 - Lx6 LINE L1 -826 6634 6174 1 1699 2112 220 68 120 chr4 146121604 146122372 -9507748 + RLTR40 LTR ERVK 1 728 -89 1 1699 789 82 0 0 chr4 146122850 146122960 -9507160 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1 1699 1577 17 0 0 chr4 146123771 146123945 -9506175 + B2_Mm1a SINE B2 2 175 -18 1 1699 313 163 11 11 chr4 146123945 146124038 -9506082 + (TAAA)n Simple_repeat Simple_repeat 2 94 0 1 1699 216 158 0 0 chr4 146124618 146124656 -9505464 + GA-rich Low_complexity Low_complexity 4 41 0 1 1699 933 70 70 0 chr4 146125300 146125429 -9504691 - B1_Mus1 SINE Alu 0 148 11 1 1699 432 215 149 78 chr4 146125303 146125444 -9504676 - B4A SINE B4 -68 224 74 1 1699 373 357 103 11 chr4 146125977 146126425 -9503695 - Lx8 LINE L1 -519 6954 6466 1 1699 1696 221 35 25 chr4 146126724 146127123 -9502997 - RMER6A LTR ERVK 0 756 354 1 1699 755 306 86 28 chr4 146129516 146129980 -9500140 - Lx8 LINE L1 -519 6954 6464 1 1699 3212 123 14 6 chr4 146130142 146130649 -9499471 + L1_Mus3 LINE L1 6128 6638 0 1 1699 1978 185 12 88 chr4 146130796 146131006 -9499114 - RMER6A LTR ERVK 0 756 576 1 1699 697 112 173 16 chr4 146131006 146131133 -9498987 - B1_Mus1 SINE Alu 0 148 2 1 1699 1978 227 40 76 chr4 146131133 146131739 -9498381 - RMER6A LTR ERVK -126 630 56 1 1699 266 244 13 0 chr4 146132287 146132365 -9497755 - L1MEg LINE L1 -4700 1384 1306 1 1699 405 309 77 10 chr4 146133823 146134032 -9496088 - Lx8 LINE L1 -763 6710 6488 1 1699 306 357 75 46 chr4 146134074 146134644 -9495476 - L1M2 LINE L1 -1765 4378 3792 1 1699 183 265 40 20 chr4 146135060 146135110 -9495010 - L2 LINE L2 -2587 832 782 1 1699 2394 105 6 9 chr4 146135183 146135529 -9494591 - IAPLTR4 LTR ERVK 0 345 1 1 1699 224 140 40 0 chr4 146135610 146135660 -9494460 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1 1699 31 0 0 0 chr4 146136118 146136149 -9493971 + AT_rich Low_complexity Low_complexity 1 31 0 1 1699 6530 156 65 12 chr4 146136154 146137660 -9492460 - Lx3B LINE L1 -54 6919 5310 1 1699 3477 18 5 0 chr4 146137660 146138054 -9492066 + MTA_Mm LTR MaLR 1 396 0 1 1699 9531 16 3 1 chr4 146138054 146139150 -9490970 + MTA_Mm-int LTR MaLR 1 1098 0 1 1699 3405 20 8 0 chr4 146139150 146139543 -9490577 + MTA_Mm LTR MaLR 1 396 0 1 1699 6530 143 4 11 chr4 146139543 146140139 -9489981 - Lx3B LINE L1 -577 5309 4717 1 1699 272 330 68 0 chr4 146140303 146140406 -9489714 - B1_Mur3 SINE Alu -37 112 3 1 1699 1173 263 91 123 chr4 146140427 146140694 -9489426 - RLTR25A LTR ERVK -531 572 334 1 1699 4545 194 40 16 chr4 146140694 146141630 -9488490 - RMER17B LTR ERVK 0 958 1 1 1699 1173 263 91 123 chr4 146141630 146141899 -9488221 - RLTR25A LTR ERVK -770 333 53 1 1699 399 377 24 14 chr4 146141949 146142159 -9487961 - B3 SINE B2 -3 213 2 1 1699 1586 42 0 0 chr4 146142182 146142373 -9487747 - B2_Mm1a SINE B2 -1 192 2 1 1699 1037 89 7 7 chr4 146142898 146143045 -9487075 - B1_Mus2 SINE Alu 0 147 1 1 1699 800 335 38 31 chr4 146143773 146144090 -9486030 - ORR1D2 LTR MaLR -9 361 43 1 1699 206 32 0 31 chr4 146144204 146144236 -9485884 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1700 315 167 0 0 chr4 146146075 146146141 -9483979 + GA-rich Low_complexity Low_complexity 2 67 0 2 1700 41 36 0 0 chr4 146146682 146146737 -9483383 + AT_rich Low_complexity Low_complexity 1 55 0 2 1700 423 0 0 0 chr4 146148212 146148259 -9481861 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1700 330 26 0 0 chr4 146148259 146148297 -9481823 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1700 419 294 113 0 chr4 146148500 146148694 -9481426 - B3 SINE B2 0 216 1 2 1700 3787 30 5 0 chr4 146149299 146149733 -9480387 - RLTR10C LTR ERVK 0 436 1 2 1700 7729 34 0 1 chr4 146149733 146150670 -9479450 - MMERVK10C-int LTR ERVK 0 7581 6646 2 1700 7247 36 0 0 chr4 146150656 146151540 -9478580 - MMERVK10C-int LTR ERVK -1771 5810 4927 2 1700 19097 43 10 1 chr4 146151538 146153938 -9476182 - MMERVK10C-int LTR ERVK -4292 3289 870 2 1700 2525 90 53 3 chr4 146153936 146154316 -9475804 - MMERVK10C-int LTR ERVK -7182 399 1 2 1700 3752 35 5 0 chr4 146154316 146154750 -9475370 - RLTR10C LTR ERVK 0 436 1 2 1700 4433 95 19 132 chr4 146154952 146155799 -9474321 - RMER17A LTR ERVK 0 751 1 2 1700 1115 82 0 7 chr4 146155889 146156028 -9474092 + B1_Mus1 SINE Alu 1 139 -9 2 1700 309 26 0 0 chr4 146156028 146156066 -9474054 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1700 309 329 32 38 chr4 146159884 146160042 -9470078 - B3 SINE B2 0 216 60 2 1700 393 79 319 9 chr4 146160121 146160234 -9469886 - B2_Mm2 SINE B2 -1 194 47 2 1700 979 137 68 0 chr4 146160266 146160427 -9469693 - B2_Mm2 SINE B2 -22 173 2 2 1700 3498 175 16 29 chr4 146161496 146162179 -9467941 - Lx2 LINE L1 -6 6991 6318 2 1700 1276 132 3 5 chr4 146162744 146165451 -9464669 + MMSAT4 Satellite Satellite 1 2703 0 2 1700 307 333 53 82 chr4 146165932 146166177 -9463943 + RMER15 LTR ERVL 255 492 -83 2 1700 180 133 16 32 chr4 146166471 146166533 -9463587 + A-rich Low_complexity Low_complexity 2 62 0 2 1700 597 28 0 0 chr4 146166582 146166653 -9463467 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1700 4614 210 27 8 chr4 146169001 146169131 -9460989 - Lx2B LINE L1 -402 6598 6467 2 1700 495 0 0 0 chr4 146169131 146169186 -9460934 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1700 4614 195 16 6 chr4 146169186 146170235 -9459885 - Lx2B LINE L1 -534 6466 5403 2 1700 420 252 44 7 chr4 146170229 146170365 -9459755 + MusHAL1 LINE L1 2106 2246 -466 2 1700 438 20 0 0 chr4 146170677 146170728 -9459392 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1700 273 349 19 39 chr4 146171016 146171171 -9458949 - MLT1B LTR MaLR -122 268 117 2 1700 5298 134 25 6 chr4 146171351 146172145 -9457975 + RMER17D2 LTR ERVK 1 809 0 2 1700 456 19 0 0 chr4 146172479 146172532 -9457588 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1700 495 0 0 0 chr4 146172978 146173033 -9457087 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1700 180 0 0 0 chr4 146173462 146173482 -9456638 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 2 1700 183 262 11 87 chr4 146173735 146173827 -9456293 + L2b LINE L2 3138 3222 -153 2 1700 664 217 57 128 chr4 146174352 146174579 -9455541 + B3 SINE B2 5 215 -1 2 1700 2019 42 8 0 chr4 146174588 146174828 -9455292 + L1Md_F2 LINE L1 5345 5586 -297 2 1700 8130 62 7 11 chr4 146174828 146175825 -9454295 + L1Md_F2 LINE L1 5587 6579 -3 2 1700 248 272 18 80 chr4 146175833 146175945 -9454175 + L1M3 LINE L1 5464 5568 -612 2 1700 1198 75 7 0 chr4 146175967 146176114 -9454006 + B1_Mus1 SINE Alu 1 148 0 2 1700 247 113 16 16 chr4 146176117 146176180 -9453940 + (CAAAAA)n Simple_repeat Simple_repeat 3 65 0 2 1700 807 236 7 0 chr4 146176182 146176330 -9453790 + B1_Mur4 SINE Alu 1 149 -1 2 1700 2455 156 13 13 chr4 146176758 146177136 -9452984 + ORR1C1 LTR MaLR 1 378 0 2 1700 3226 59 10 13 chr4 146178021 146178418 -9451702 - MTA_Mm LTR MaLR 0 396 1 2 1700 272 351 35 23 chr4 146179853 146179995 -9450125 - MIR3 SINE MIR -45 163 21 2 1700 21 0 0 0 chr4 146180297 146180318 -9449802 + AT_rich Low_complexity Low_complexity 1 21 0 2 1700 1273 77 38 16 chr4 146180871 146181056 -9449064 + L1_Mus2 LINE L1 6378 6566 0 2 1700 486 49 0 0 chr4 146181135 146181196 -9448924 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1700 947 204 34 29 chr4 146181466 146181673 -9448447 + MTC LTR MaLR 214 421 0 2 1700 245 296 167 21 chr4 146182472 146182722 -9447398 - MLT1D LTR MaLR -212 293 1 2 1700 631 209 96 15 chr4 146183257 146183393 -9446727 - B1F SINE Alu -2 147 1 2 1700 1155 175 120 0 chr4 146183454 146183654 -9446466 - URR1A DNA MER1_type -2 224 1 2 1700 214 358 125 5 chr4 146183774 146183990 -9446130 + L3 LINE CR1 3790 4031 -458 2 1700 243 0 0 0 chr4 146184058 146184085 -9446035 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1700 378 0 0 0 chr4 146184085 146184126 -9445994 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1700 264 286 0 72 chr4 146184137 146184219 -9445901 - B4A SINE B4 -14 278 203 2 1700 1636 211 53 25 chr4 146184219 146184578 -9445542 - RLTR17 LTR ERVK 0 692 324 2 1700 1158 200 20 0 chr4 146184767 146184962 -9445158 + B3 SINE B2 2 200 -16 2 1700 207 0 0 0 chr4 146184962 146184985 -9445135 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 2 1700 429 76 0 0 chr4 146185117 146185183 -9444937 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1700 23 33 0 0 chr4 146185244 146185274 -9444846 + AT_rich Low_complexity Low_complexity 1 30 0 2 1700 366 200 53 0 chr4 146185794 146185869 -9444251 - Lx6 LINE L1 -1237 6223 6145 2 1700 450 0 0 0 chr4 146185875 146185925 -9444195 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1700 812 244 124 110 chr4 146186167 146186466 -9443654 - MTEb LTR MaLR 0 379 76 2 1700 3294 186 35 19 chr4 146186466 146187098 -9443022 - RLTR26 LTR ERVK 0 642 1 2 1700 317 206 103 0 chr4 146187098 146187161 -9442959 - MTEb LTR MaLR -305 74 5 2 1700 3194 227 91 11 chr4 146187893 146188638 -9441482 + Lx9 LINE L1 6526 7330 -314 2 1700 282 158 35 17 chr4 146188638 146188696 -9441424 - RLTR26 LTR ERVK -316 326 268 2 1700 298 208 125 0 chr4 146188698 146188770 -9441350 + Lx9 LINE L1 7345 7425 -219 2 1700 485 16 16 0 chr4 146189134 146189196 -9440924 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 2 1700 1103 89 12 0 chr4 146189545 146189714 -9440406 + (CATA)n Simple_repeat Simple_repeat 2 172 0 2 1700 237 132 0 0 chr4 146190267 146190305 -9439815 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 1700 483 33 0 0 chr4 146190366 146190427 -9439693 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1700 2059 206 70 14 chr4 146190500 146191083 -9439037 - Lx6 LINE L1 -983 6477 5755 2 1700 335 184 0 11 chr4 146191431 146191519 -9438601 + CT-rich Low_complexity Low_complexity 2 88 0 2 1700 4727 174 23 18 chr4 146192222 146193120 -9437000 - L1_Mur3 LINE L1 -85 5795 4893 2 1700 4420 66 13 13 chr4 146193976 146194527 -9435593 + L1_Mus1 LINE L1 6017 6567 0 2 1700 15647 146 81 21 chr4 146194613 146198650 -9431470 - Lx4B LINE L1 -19 7039 2744 2 1700 14262 94 19 4 chr4 146198652 146200603 -9429517 + L1VL4 LINE L1 36 2019 -1540 2 1700 3043 41 6 0 chr4 146200603 146200947 -9429173 - ORR1A0 LTR MaLR 0 346 1 2 1700 14262 74 13 4 chr4 146200947 146201762 -9428358 + L1VL4 LINE L1 2020 2841 -718 2 1700 1221 205 75 4 chr4 146201762 146202027 -9428093 - ORR1C1 LTR MaLR -94 284 1 2 1700 1816 238 33 0 chr4 146202498 146202893 -9427227 + MT2A LTR ERVL 3 410 -123 2 1700 270 0 0 0 chr4 146203041 146203071 -9427049 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1700 748 82 0 0 chr4 146203071 146203168 -9426952 - B1_Mus2 SINE Alu -10 137 41 2 1700 865 250 126 66 chr4 146203553 146203870 -9426250 + ORR1D2 LTR MaLR 3 338 -32 2 1700 243 268 18 0 chr4 146203881 146203937 -9426183 - ORR1D1 LTR MaLR -317 57 1 2 1700 1879 238 63 6 chr4 146204107 146204602 -9425518 + ORR1D2-int LTR MaLR 11 533 -837 2 1700 575 187 54 19 chr4 146204609 146204780 -9425340 + B3 SINE B2 1 176 -19 2 1700 572 230 0 0 chr4 146204806 146204919 -9425201 + ORR1D2-int LTR MaLR 535 647 -723 2 1700 1057 231 163 6 chr4 146204947 146205169 -9424951 + ORR1D2 LTR MaLR 5 273 -97 2 1700 2057 165 41 16 chr4 146205169 146205532 -9424588 - ORR1D1 LTR MaLR -2 372 1 2 1700 1057 231 163 6 chr4 146205532 146205622 -9424498 + ORR1D2 LTR MaLR 274 366 -4 2 1700 1694 138 65 146 chr4 146206032 146206430 -9423690 - ORR1B1 LTR MaLR 0 394 29 2 1700 809 236 6 0 chr4 146206432 146206597 -9423523 + Lx6 LINE L1 6477 6642 -818 2 1700 235 204 0 0 chr4 146206597 146206646 -9423474 + Lx6 LINE L1 6953 7001 -459 2 1700 29 60 0 0 chr4 146207147 146207197 -9422923 + GC_rich Low_complexity Low_complexity 1 50 0 2 1700 1233 85 6 22 chr4 146207871 146208029 -9422091 + B2_Mm1a SINE B2 2 160 -33 2 1700 282 29 0 0 chr4 146208029 146208064 -9422056 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1700 1233 85 6 22 chr4 146208064 146208086 -9422034 + B2_Mm1a SINE B2 161 179 -14 2 1700 186 43 0 0 chr4 146210026 146210049 -9420071 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 1700 1220 83 0 0 chr4 146210062 146210219 -9419901 + B2_Mm2 SINE B2 5 161 -34 2 1700 549 0 0 0 chr4 146210219 146210280 -9419840 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 2 1700 2947 220 35 35 chr4 146210286 146210848 -9419272 + Lx7 LINE L1 6990 7543 -153 2 1700 702 91 0 0 chr4 146210848 146210947 -9419173 + (CAATA)n Simple_repeat Simple_repeat 2 100 0 2 1700 2947 220 35 35 chr4 146210947 146211091 -9419029 + Lx7 LINE L1 7544 7696 0 2 1700 1081 257 120 6 chr4 146211106 146211439 -9418681 + MTD LTR MaLR 1 371 -48 2 1700 596 141 0 7 chr4 146211466 146211602 -9418518 + (TC)n Simple_repeat Simple_repeat 1 135 0 2 1700 755 196 35 7 chr4 146212108 146212252 -9417868 + B1_Mur3 SINE Alu 1 148 -1 2 1700 346 284 8 65 chr4 146212264 146212388 -9417732 + RMER5 LTR ERV1 14 130 -404 2 1700 340 161 0 16 chr4 146212393 146212456 -9417664 - RMER1A Other Other -917 113 52 2 1700 2256 188 99 2 chr4 146212618 146213092 -9417028 - RMER5 LTR ERV1 0 534 15 2 1700 1246 48 7 0 chr4 146213150 146213295 -9416825 - B1_Mus2 SINE Alu 0 147 2 2 1700 270 0 0 0 chr4 146213737 146213767 -9416353 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1700 201 163 40 20 chr4 146215189 146215239 -9414881 + CT-rich Low_complexity Low_complexity 4 54 0 2 1700 2089 234 48 21 chr4 146215413 146215431 -9414689 - RMER5 LTR ERV1 0 534 521 2 1700 1356 69 69 0 chr4 146215431 146215605 -9414515 + B2_Mm2 SINE B2 4 189 -6 2 1700 2089 234 48 21 chr4 146215605 146216106 -9414014 - RMER5 LTR ERV1 -14 520 1 2 1700 360 0 0 0 chr4 146216347 146216387 -9413733 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1700 1584 60 0 11 chr4 146216807 146216993 -9413127 + B2_Mm1t SINE B2 2 185 -8 3 1700 1269 238 201 74 chr4 146217715 146217798 -9412322 + MT2A LTR ERVL 1 81 -452 3 1700 354 45 0 0 chr4 146217798 146217842 -9412278 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 3 1700 1269 238 201 74 chr4 146217842 146217953 -9412167 + MT2A LTR ERVL 82 177 -356 3 1700 486 0 0 0 chr4 146217953 146218007 -9412113 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1700 1269 238 201 74 chr4 146218007 146218284 -9411836 + MT2A LTR ERVL 178 531 -2 3 1700 1273 228 19 11 chr4 146218522 146218788 -9411332 + RMER5 LTR ERV1 23 290 -244 3 1700 2338 108 6 12 chr4 146218841 146219170 -9410950 - ORR1A4 LTR MaLR -2 327 1 3 1700 410 271 88 31 chr4 146219190 146219418 -9410702 - RMER17C LTR ERVK -47 363 123 3 1700 521 117 0 0 chr4 146219551 146219628 -9410492 + RMER5 LTR ERV1 458 534 0 3 1700 992 184 122 15 chr4 146220313 146220455 -9409665 + URR1A DNA MER1_type 1 167 -59 3 1700 3375 66 2 2 chr4 146220455 146220851 -9409269 - MTA_Mm LTR MaLR 0 396 1 3 1700 992 184 122 15 chr4 146220851 146220912 -9409208 + URR1A DNA MER1_type 168 226 0 3 1700 1083 203 14 19 chr4 146220977 146221188 -9408932 + Lx5 LINE L1 6841 7050 0 3 1700 782 128 8 0 chr4 146221361 146221374 -9408746 + (TTTC)n Simple_repeat Simple_repeat 1 13 0 3 1700 1684 37 21 0 chr4 146221374 146221562 -9408558 - B2_Mm1t SINE B2 -1 192 1 3 1700 782 128 8 0 chr4 146221562 146221681 -9408439 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 3 1700 655 80 0 0 chr4 146221992 146222080 -9408040 + Lx2 LINE L1 6556 6643 -354 3 1700 1265 131 82 0 chr4 146222080 146222286 -9407834 + Lx2 LINE L1 6775 6997 0 3 1700 522 0 0 0 chr4 146222408 146222466 -9407654 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1700 1248 142 243 25 chr4 146223459 146223897 -9406223 + RMER5 LTR ERV1 1 533 -1 3 1700 5082 117 3 19 chr4 146224289 146225144 -9404976 - L1_Mur1 LINE L1 -366 5520 4679 3 1700 6484 163 4 69 chr4 146225146 146225395 -9404725 + L1_Mur1 LINE L1 3066 3268 -2609 3 1700 1230 41 0 0 chr4 146225395 146225542 -9404578 + B1_Mm SINE Alu 1 147 0 3 1700 7610 100 4 14 chr4 146225542 146226778 -9403342 + L1_Mur1 LINE L1 3263 4463 -1423 3 1700 981 85 18 18 chr4 146226773 146226941 -9403179 + L1_Mus3 LINE L1 6469 6636 -2 3 1700 1538 97 0 0 chr4 146226956 146227183 -9402937 + L1_Mur1 LINE L1 4449 4675 -1211 3 1700 288 252 17 25 chr4 146227243 146227361 -9402759 - L1_Rod LINE L1 -36 5811 5695 3 1700 1446 167 15 0 chr4 146227372 146227641 -9402479 - Lx3B LINE L1 -525 6448 6176 3 1700 3927 143 30 9 chr4 146227633 146228510 -9401610 - Lx4A LINE L1 -750 6308 5409 3 1700 2506 165 12 16 chr4 146228521 146228983 -9401137 + L1_Mur2 LINE L1 4815 5280 -597 3 1700 1617 125 33 66 chr4 146228983 146229316 -9400804 - RLTRETN_Mm LTR ERVK 0 322 1 3 1700 2506 165 12 16 chr4 146229316 146229365 -9400755 + L1_Mur2 LINE L1 5281 5324 -553 3 1700 521 288 43 25 chr4 146229379 146229584 -9400536 - RMER1A Other Other -845 185 19 3 1700 1314 96 11 0 chr4 146229584 146229772 -9400348 - BGLII LTR ERVK -231 190 1 3 1700 1327 234 27 36 chr4 146229773 146230247 -9399873 - RMER3D-int LTR ERVK -1 2841 2372 3 1700 1265 34 0 0 chr4 146230266 146230413 -9399707 - B1_Mus2 SINE Alu 0 147 1 3 1700 481 73 12 0 chr4 146230419 146230501 -9399619 - L1Md_F3 LINE L1 -2 6582 6500 3 1700 32 26 0 0 chr4 146230752 146230791 -9399329 + GC_rich Low_complexity Low_complexity 1 39 0 3 1700 208 49 73 0 chr4 146231687 146231728 -9398392 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1700 1106 89 0 0 chr4 146231732 146231878 -9398242 - B1_Mm SINE Alu 0 147 2 3 1700 1008 116 0 13 chr4 146232319 146232468 -9397652 - B1_Mm SINE Alu 0 147 1 3 1700 258 315 41 0 chr4 146232765 146232838 -9397282 - RLTR18B LTR ERVK -5 507 432 3 1700 1351 314 73 35 chr4 146233203 146233795 -9396325 - RLTR18 LTR ERVK -2 614 1 3 1700 288 257 4 71 chr4 146233970 146234061 -9396059 + B1_Mm SINE Alu 27 116 -33 3 1700 1185 305 65 2 chr4 146234698 146235132 -9394988 - Lx6 LINE L1 -826 6634 6174 3 1700 2374 224 79 72 chr4 146235265 146236034 -9394086 + RLTR40 LTR ERVK 1 775 -42 3 1700 1202 74 0 6 chr4 146236505 146236681 -9393439 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 3 1700 21 0 0 0 chr4 146236947 146236968 -9393152 + AT_rich Low_complexity Low_complexity 1 21 0 3 1700 528 81 0 0 chr4 146237500 146237574 -9392546 + (CAAG)n Simple_repeat Simple_repeat 2 75 0 3 1700 2061 155 104 130 chr4 146238496 146239073 -9391047 - LTRIS2 LTR ERV1 0 564 3 3 1700 525 331 108 14 chr4 146240583 146240954 -9389166 - Lx8 LINE L1 -602 6871 6466 3 1700 1158 62 0 0 chr4 146241251 146241397 -9388723 - B1_Mm SINE Alu 0 147 2 3 1700 2584 231 20 109 chr4 146241423 146242190 -9387930 - RMER6A LTR ERVK -2 754 57 3 1700 1044 122 0 0 chr4 146242652 146242799 -9387321 - B1_Mus1 SINE Alu -1 147 1 3 1700 713 66 189 0 chr4 146244164 146244286 -9385834 - B2_Mm2 SINE B2 -1 194 50 3 1700 372 119 0 0 chr4 146245075 146245134 -9384986 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1700 231 114 0 0 chr4 146245178 146245213 -9384907 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1700 216 97 0 0 chr4 146245778 146245809 -9384311 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1700 13421 137 36 38 chr4 146246189 146247451 -9382669 - Lx2 LINE L1 -388 6609 5282 3 1700 5648 114 9 1 chr4 146247451 146248294 -9381826 - L1_Mus3 LINE L1 -6 6632 5783 3 1700 13421 131 30 75 chr4 146248294 146248322 -9381798 - Lx2 LINE L1 -602 5281 5255 3 1700 1064 97 0 7 chr4 146248322 146248467 -9381653 - B1_Mus2 SINE Alu -1 146 3 3 1700 13421 131 30 75 chr4 146248467 146248605 -9381515 - Lx2 LINE L1 -629 5254 5136 3 1700 213 39 0 0 chr4 146248605 146248631 -9381489 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 3 1700 1208 63 6 0 chr4 146248631 146248789 -9381331 - B2_Mm1t SINE B2 -33 160 2 3 1700 13421 131 30 75 chr4 146248789 146250754 -9379366 - Lx2 LINE L1 -748 5135 3156 3 1700 924 306 106 30 chr4 146250823 146251224 -9378896 - RLTR18 LTR ERVK -85 531 102 3 1700 249 33 0 0 chr4 146251224 146251254 -9378866 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1700 924 307 97 60 chr4 146251254 146251309 -9378811 - RLTR18 LTR ERVK -408 104 45 3 1700 345 47 0 0 chr4 146251309 146251352 -9378768 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1700 1013 78 0 48 chr4 146251355 146251502 -9378618 - B1_Mm SINE Alu -6 141 2 3 1700 316 309 83 104 chr4 146251502 146251544 -9378576 - RLTR18 LTR ERVK -468 44 2 3 1700 1036 315 11 3 chr4 146251819 146252179 -9377941 - Lx6 LINE L1 -828 6632 6270 3 1700 301 200 57 0 chr4 146252376 146252446 -9377674 + RLTR40 LTR ERVK 1 74 -743 3 1700 921 222 47 39 chr4 146252440 146252813 -9377307 + RLTR40 LTR ERVK 447 775 -42 3 1700 249 222 0 0 chr4 146253294 146253357 -9376763 + T-rich Low_complexity Low_complexity 1 63 0 3 1700 225 187 31 62 chr4 146253447 146253544 -9376576 - L1_Mur3 LINE L1 -4451 1429 1336 3 1700 189 139 0 0 chr4 146253584 146253627 -9376493 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1700 225 94 0 0 chr4 146254203 146254235 -9375885 + (CAAG)n Simple_repeat Simple_repeat 4 35 0 3 1700 27 49 0 0 chr4 146254722 146254763 -9375357 + AT_rich Low_complexity Low_complexity 1 41 0 3 1700 292 22 44 0 chr4 146257081 146257126 -9372994 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 3 1700 1181 55 7 0 chr4 146257144 146257289 -9372831 - B1_Mm SINE Alu -1 146 1 3 1700 402 291 100 40 chr4 146257290 146257541 -9372579 - Lx8 LINE L1 -739 6734 6469 3 1700 278 250 0 27 chr4 146258709 146258783 -9371337 + (TATG)n Simple_repeat Simple_repeat 1 72 0 3 1700 189 0 0 0 chr4 146258802 146258823 -9371297 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 3 1700 387 0 0 0 chr4 146259066 146259109 -9371011 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1700 5565 181 35 8 chr4 146259317 146260876 -9369244 - Lx3A LINE L1 -53 6928 5318 3 1701 4111 39 62 17 chr4 146310937 146311515 -9318605 + RLTR6_Mm LTR ERV1 1 604 -50 3 1701 17100 51 44 8 chr4 146311515 146315063 -9315057 + MMVL30-int LTR ERV1 21 3698 0 3 1701 3990 63 61 21 chr4 146315063 146315667 -9314453 + RLTR6_Mm LTR ERV1 1 628 -26 3 1701 1407 80 16 0 chr4 146318604 146318792 -9311328 + B2_Mm1a SINE B2 1 191 -2 3 1701 751 154 0 0 chr4 146320855 146320978 -9309142 - Lx LINE L1 -619 6035 5913 3 1701 3875 122 14 3 chr4 146320978 146321568 -9308552 + Lx LINE L1 6043 6638 -16 3 1701 521 30 15 0 chr4 146321768 146321835 -9308285 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1701 4870 191 47 45 chr4 146322820 146323931 -9306189 - RLTR13D3 LTR ERVK 0 1114 2 3 1701 1121 99 12 0 chr4 146324130 146324301 -9305819 + B2_Mm2 SINE B2 4 176 -19 3 1701 642 248 86 6 chr4 146324306 146324468 -9305652 + B3 SINE B2 24 198 -18 3 1701 21 71 0 0 chr4 146324511 146324553 -9305567 + AT_rich Low_complexity Low_complexity 1 42 0 3 1701 21 36 0 0 chr4 146325344 146325372 -9304748 + AT_rich Low_complexity Low_complexity 1 28 0 3 1701 763 194 30 0 chr4 146325375 146325509 -9304611 + B1_Mus2 SINE Alu 5 142 -5 3 1701 180 0 0 0 chr4 146325515 146325535 -9304585 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1701 273 254 0 15 chr4 146325830 146325898 -9304222 - ID4_ SINE ID -14 69 3 3 1701 785 171 50 0 chr4 146326004 146326144 -9303976 + B1_Mus2 SINE Alu 1 147 0 3 1701 853 219 33 33 chr4 146326153 146326365 -9303755 - B3 SINE B2 0 216 5 3 1701 568 296 19 37 chr4 146326619 146326833 -9303287 - ID_B1 SINE B4 -2 222 13 3 1701 849 218 34 34 chr4 146326875 146327084 -9303036 - B3 SINE B2 -7 209 1 3 1701 4477 204 181 44 chr4 146327325 146328310 -9301810 - L1_Mur2 LINE L1 -1062 4815 3823 3 1701 3024 177 21 33 chr4 146328310 146328918 -9301202 + MT2B LTR ERVL 1 601 0 3 1701 4477 204 181 44 chr4 146328918 146328932 -9301188 - L1_Mur2 LINE L1 -2055 3822 3814 3 1701 770 164 43 48 chr4 146328932 146329118 -9301002 - B2_Mm2 SINE B2 -8 187 3 3 1701 4477 204 181 44 chr4 146329118 146329260 -9300860 - L1_Mur2 LINE L1 -2064 3813 3463 3 1701 1150 82 0 0 chr4 146329260 146329407 -9300713 - B1_Mm SINE Alu 0 147 1 3 1701 4477 204 181 44 chr4 146329407 146329751 -9300369 - L1_Mur2 LINE L1 -2415 3462 3124 3 1701 523 273 48 12 chr4 146329785 146329952 -9300168 - Lx2B LINE L1 -6 6994 6822 3 1701 2444 151 18 18 chr4 146330069 146330507 -9299613 - BGLII_B LTR ERVK 0 441 4 3 1701 6657 241 59 26 chr4 146330576 146334103 -9296017 - MYSERV16_I-int LTR ERVK -1924 4626 30 3 1701 783 167 13 46 chr4 146334126 146334138 -9295982 - B1_Mus1 SINE Alu -1 147 138 3 1701 207 0 0 0 chr4 146334138 146334161 -9295959 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1701 783 167 13 46 chr4 146334161 146334299 -9295821 - B1_Mus1 SINE Alu -11 137 2 3 1701 1941 115 3 58 chr4 146334405 146334747 -9295373 - BGLII_B LTR ERVK -118 323 1 4 1701 5603 183 40 37 chr4 146335125 146336235 -9293885 - RLTR13D3 LTR ERVK 0 1114 1 4 1701 198 71 0 0 chr4 146337321 146337349 -9292771 + (TAA)n Simple_repeat Simple_repeat 3 30 0 4 1701 399 219 15 130 chr4 146337678 146337697 -9292423 + MT2B LTR ERVL 149 152 -449 4 1701 929 141 7 21 chr4 146337697 146337842 -9292278 + B1_Mus1 SINE Alu 1 143 -5 4 1701 1248 141 16 0 chr4 146338030 146338215 -9291905 + B2_Mm2 SINE B2 1 188 -7 4 1701 430 130 29 29 chr4 146340158 146340261 -9289859 + L1_Mur2 LINE L1 3662 3764 -2113 4 1701 409 272 17 9 chr4 146340259 146340374 -9289746 - Lx6 LINE L1 -24 7436 7321 4 1701 216 86 0 0 chr4 146340374 146340409 -9289711 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1701 263 325 36 0 chr4 146340732 146340815 -9289305 - RLTR18B LTR ERVK 0 512 427 4 1701 407 309 38 38 chr4 146340997 146341182 -9288938 - RMER21B LTR ERV1 -335 507 323 4 1701 1352 287 43 42 chr4 146341239 146341745 -9288375 - RLTR18 LTR ERVK -105 511 5 4 1701 2403 126 166 24 chr4 146341856 146342278 -9287842 - RLTR45 LTR ERVK 0 482 1 4 1701 275 267 0 62 chr4 146342349 146342429 -9287691 + B1_Mm SINE Alu 26 100 -47 4 1701 1216 308 68 5 chr4 146343087 146343528 -9286592 - Lx6 LINE L1 -820 6640 6172 4 1701 1818 235 102 115 chr4 146343645 146344462 -9285658 + RLTR40 LTR ERVK 1 806 -11 4 1701 825 103 0 0 chr4 146344922 146345048 -9285072 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 4 1701 229 250 26 0 chr4 146345139 146345215 -9284905 - L1_Mur3 LINE L1 -4451 1429 1352 4 1701 229 268 10 10 chr4 146345819 146345917 -9284203 + (CAAA)n Simple_repeat Simple_repeat 3 100 0 4 1701 195 100 0 0 chr4 146347544 146347574 -9282546 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1701 1162 51 36 0 chr4 146347583 146347721 -9282399 - B1_Mus1 SINE Alu -5 143 1 4 1701 745 327 95 18 chr4 146348274 146348726 -9281394 - Lx8 LINE L1 -519 6954 6468 4 1701 1647 226 35 25 chr4 146349021 146349420 -9280700 - RMER6A LTR ERVK 0 756 354 4 1701 240 196 0 0 chr4 146349620 146349666 -9280454 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 4 1701 232 284 141 7 chr4 146350851 146350993 -9279127 + RMER6C LTR ERVK 351 511 -179 4 1701 876 326 73 15 chr4 146351843 146352307 -9277813 - Lx8 LINE L1 -519 6954 6464 4 1701 3611 116 4 6 chr4 146352469 146352981 -9277139 + L1_Mus3 LINE L1 6128 6638 0 4 1701 917 219 0 16 chr4 146353128 146353318 -9276802 - RMER6A LTR ERVK 0 756 570 4 1701 24 0 0 0 chr4 146353318 146353342 -9276778 + AT_rich Low_complexity Low_complexity 1 24 0 4 1701 775 104 173 16 chr4 146353342 146353469 -9276651 - B1_Mus1 SINE Alu 0 148 2 4 1701 1321 212 49 48 chr4 146353473 146354075 -9276045 - RMER6A LTR ERVK -155 601 56 4 1701 298 262 12 0 chr4 146354584 146354664 -9275456 - L1MEg LINE L1 -4698 1386 1306 4 1701 22 56 0 0 chr4 146355203 146355239 -9274881 + AT_rich Low_complexity Low_complexity 1 36 0 4 1701 356 72 43 14 chr4 146356673 146356743 -9273377 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1701 24 53 0 0 chr4 146358309 146358347 -9271773 + AT_rich Low_complexity Low_complexity 1 38 0 4 1701 720 108 9 18 chr4 146359102 146359215 -9270905 - B2_Mm1t SINE B2 -8 185 74 4 1701 375 339 16 8 chr4 146359816 146359944 -9270176 - B3 SINE B2 -28 188 60 4 1701 1191 128 50 0 chr4 146359977 146360156 -9269964 + B2_Mm2 SINE B2 2 189 -6 4 1701 222 91 0 0 chr4 146360272 146360305 -9269815 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 4 1701 1090 96 0 40 chr4 146360507 146360659 -9269461 - B1_Mus2 SINE Alu 0 147 2 4 1701 2396 194 26 4 chr4 146361555 146362010 -9268110 - Lx2 LINE L1 0 6997 6533 4 1701 5352 87 34 7 chr4 146362035 146362738 -9267382 - L1Md_F2 LINE L1 0 6582 5861 4 1701 513 0 0 0 chr4 146362874 146362931 -9267189 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1701 1419 126 1 0 chr4 146363418 146365035 -9265085 + MMSAT4 Satellite Satellite 1 1617 0 4 1701 337 211 165 0 chr4 146365546 146365655 -9264465 + RMER15 LTR ERVL 432 558 -17 4 1701 362 256 44 11 chr4 146365723 146365814 -9264306 + URR1B DNA MER1_type 3 96 -129 4 1701 1392 99 28 0 chr4 146366230 146366411 -9263709 + B2_Mm1t SINE B2 2 187 -6 4 1701 649 296 25 45 chr4 146366914 146367156 -9262964 - ID_B1 SINE B4 -50 242 7 4 1701 602 225 45 23 chr4 146367189 146367321 -9262799 - B3 SINE B2 -5 211 77 4 1701 540 30 0 0 chr4 146367560 146367626 -9262494 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1701 182 262 18 24 chr4 146367655 146367819 -9262301 + (TG)n Simple_repeat Simple_repeat 2 164 0 4 1701 1156 149 17 0 chr4 146367870 146368051 -9262069 + B2_Mm2 SINE B2 3 186 -9 4 1701 256 234 45 30 chr4 146368094 146368160 -9261960 + RSINE1 SINE B4 15 81 -84 4 1701 477 283 129 28 chr4 146368175 146368353 -9261767 + B3A SINE B2 3 198 0 4 1701 180 0 0 0 chr4 146368406 146368426 -9261694 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1701 270 282 0 27 chr4 146368640 146368713 -9261407 + PB1D10 SINE Alu 41 111 -6 4 1701 965 178 113 0 chr4 146368716 146368901 -9261219 + B3 SINE B2 1 206 -10 4 1701 703 223 165 24 chr4 146369043 146369213 -9260907 + B3A SINE B2 1 194 -4 4 1701 3592 38 2 0 chr4 146369564 146369959 -9260161 + MTA_Mm LTR MaLR 1 396 0 4 1701 7140 21 0 3 chr4 146369959 146370817 -9259303 + MTA_Mm-int LTR MaLR 1 855 -243 4 1701 4137 54 2 32 chr4 146370817 146371314 -9258806 + LTRIS_Mm LTR ERV1 1 482 0 4 1701 14019 256 36 35 chr4 146371314 146377061 -9253059 + RLTR6-int LTR ERV1 1 5800 -1978 4 1701 586 359 40 46 chr4 146377806 146378262 -9251858 + RLTR6-int LTR ERV1 6498 6950 -656 4 1701 242 118 0 38 chr4 146378433 146378486 -9251634 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 1701 1302 38 0 0 chr4 146378491 146378651 -9251469 + (TCTCCC)n Simple_repeat Simple_repeat 3 162 0 4 1701 290 261 43 14 chr4 146378664 146378734 -9251386 - B1_Mus1 SINE Alu -64 84 13 4 1701 3098 68 42 0 chr4 146379246 146379626 -9250494 - MTA_Mm LTR MaLR 0 396 1 4 1701 2997 12 3 0 chr4 146379845 146380166 -9249954 - RLTRETN_Mm LTR ERVK 0 322 1 4 1701 351 0 0 0 chr4 146380312 146380351 -9249769 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1701 745 192 279 0 chr4 146381073 146381214 -9248906 + B3 SINE B2 1 186 -30 4 1701 480 18 0 0 chr4 146381214 146381271 -9248849 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1701 745 192 279 0 chr4 146381271 146381290 -9248830 + B3 SINE B2 187 205 -11 4 1701 793 156 48 30 chr4 146381517 146381682 -9248438 + URR1A DNA MER1_type 57 224 -2 4 1701 1426 89 5 21 chr4 146381862 146382056 -9248064 + B2_Mm1a SINE B2 1 191 -2 4 1701 297 254 28 0 chr4 146382113 146382184 -9247936 + B3A SINE B2 1 73 -125 4 1701 25 31 0 0 chr4 146382232 146382264 -9247856 + AT_rich Low_complexity Low_complexity 1 32 0 4 1701 560 282 37 49 chr4 146382279 146382443 -9247677 + RSINE1 SINE B4 4 165 0 4 1701 929 99 152 0 chr4 146382488 146382639 -9247481 + B2_Mm2 SINE B2 2 175 -20 4 1701 289 265 28 2 chr4 146382832 146382912 -9247208 + B1_Mur1 SINE Alu 53 133 -16 4 1701 21 0 0 0 chr4 146383210 146383231 -9246889 + AT_rich Low_complexity Low_complexity 1 21 0 4 1701 694 127 407 11 chr4 146383410 146383669 -9246451 - LTRIS3 LTR ERV1 0 512 1 4 1701 313 73 0 0 chr4 146383670 146383711 -9246409 - RLTR6-int LTR ERV1 -1 7777 7737 4 1701 646 198 35 0 chr4 146383848 146383964 -9246156 - RMER16-int LTR ERVK -4600 806 687 4 1701 945 127 108 6 chr4 146383952 146384119 -9246001 - RMER16-int LTR ERVK -5082 324 141 4 1701 1322 41 0 0 chr4 146384124 146384271 -9245849 + B1_Mm SINE Alu 1 147 0 4 1701 210 37 0 0 chr4 146384304 146384331 -9245789 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1701 3966 19 30 69 chr4 146384732 146385226 -9244894 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1701 257 170 87 165 chr4 146385434 146385561 -9244559 - MMVL30-int LTR ERV1 -3581 117 1 4 1701 687 127 42 40 chr4 146385561 146385702 -9244418 - LTRIS5 LTR ERV1 0 564 305 4 1701 713 75 85 0 chr4 146385698 146385804 -9244316 - LTRIS5 LTR ERV1 -332 115 1 4 1701 484 273 243 20 chr4 146385804 146386004 -9244116 + B4A SINE B4 42 286 -6 4 1701 1553 75 5 0 chr4 146386219 146386407 -9243713 + B2_Mm1a SINE B2 1 189 -4 4 1701 207 0 0 0 chr4 146386731 146386754 -9243366 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1701 351 302 133 52 chr4 146386903 146387077 -9243043 - RMER15 LTR ERVL -19 556 356 4 1701 2117 121 9 38 chr4 146387077 146387395 -9242725 + RLTR27 LTR ERVK 1 309 0 4 1701 351 302 133 52 chr4 146387395 146387468 -9242652 - RMER15 LTR ERVL -220 355 289 4 1701 243 342 0 0 chr4 146387468 146387541 -9242579 + MTEa LTR MaLR 27 99 -280 4 1701 688 292 87 32 chr4 146387548 146387767 -9242353 + MT2A LTR ERVL 158 388 -145 4 1701 231 173 0 0 chr4 146388357 146388409 -9241711 + CT-rich Low_complexity Low_complexity 2 53 0 4 1701 270 136 0 0 chr4 146388979 146389023 -9241097 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1701 1173 75 0 0 chr4 146389026 146389173 -9240947 - B1_Mus2 SINE Alu 0 147 1 4 1701 295 153 23 23 chr4 146390082 146390169 -9239951 + L1_Mur2 LINE L1 3678 3764 -2113 4 1701 508 217 16 8 chr4 146390174 146390295 -9239825 - Lx7 LINE L1 -16 7680 7559 4 1701 262 325 36 0 chr4 146390623 146390706 -9239414 - RLTR18 LTR ERVK 0 512 427 4 1701 356 316 44 44 chr4 146390888 146391070 -9239050 - RMER21B LTR ERV1 -335 507 326 4 1701 1275 260 30 46 chr4 146391105 146391451 -9238669 - RLTR18 LTR ERVK -105 511 203 4 1701 1049 90 14 0 chr4 146391451 146391595 -9238525 - B1_Mus1 SINE Alu -1 147 2 4 1701 1275 285 49 80 chr4 146391595 146391800 -9238320 - RLTR18 LTR ERVK -414 202 1 4 1701 273 287 3 59 chr4 146391973 146392065 -9238055 + B1_Mm SINE Alu 26 116 -33 4 1701 366 231 0 0 chr4 146392674 146392765 -9237355 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1701 1175 305 65 0 chr4 146392793 146393226 -9236894 - Lx6 LINE L1 -826 6634 6174 4 1701 2138 218 68 120 chr4 146393346 146394114 -9236006 + RLTR40 LTR ERVK 1 728 -89 4 1701 1005 67 0 0 chr4 146394590 146394724 -9235396 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 4 1701 1615 21 21 0 chr4 146395535 146395723 -9234397 + B2_Mm1a SINE B2 2 193 0 4 1701 201 132 0 0 chr4 146395728 146395766 -9234354 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 5 1701 915 62 70 8 chr4 146397011 146397140 -9232980 - B1_Mus1 SINE Alu 0 148 12 5 1701 428 213 152 80 chr4 146397018 146397156 -9232964 - B4A SINE B4 -71 221 74 5 1701 360 359 103 11 chr4 146397689 146398137 -9231983 - Lx8 LINE L1 -519 6954 6466 5 1701 1685 224 35 25 chr4 146398436 146398835 -9231285 - RMER6A LTR ERVK 0 756 354 5 1701 220 191 0 0 chr4 146399036 146399078 -9231042 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 5 1701 756 306 86 28 chr4 146401227 146401691 -9228429 - Lx8 LINE L1 -519 6954 6464 5 1701 3259 121 14 6 chr4 146401853 146402360 -9227760 + L1_Mus3 LINE L1 6128 6638 0 5 1701 1970 189 12 88 chr4 146402507 146402717 -9227403 - RMER6A LTR ERVK 0 756 576 5 1701 697 112 173 16 chr4 146402717 146402844 -9227276 - B1_Mus1 SINE Alu 0 148 2 5 1701 1970 235 39 75 chr4 146402844 146403450 -9226670 - RMER6A LTR ERVK -126 630 56 5 1701 266 244 13 0 chr4 146404002 146404080 -9226040 - L1MEg LINE L1 -4700 1384 1306 5 1701 405 309 77 10 chr4 146405537 146405746 -9224374 - Lx8 LINE L1 -763 6710 6488 5 1701 4974 146 3 13 chr4 146406615 146406936 -9223184 - L1_Mur1 LINE L1 -260 5626 5310 5 1701 3483 15 5 0 chr4 146406936 146407330 -9222790 + MTA_Mm LTR MaLR 1 396 0 5 212 9586 15 3 0 chr4 146407330 146408425 -9221695 + MTA_Mm-int LTR MaLR 1 1098 0 5 1702 3427 18 8 0 chr4 146408425 146408818 -9221302 + MTA_Mm LTR MaLR 1 396 0 5 1702 4974 146 3 13 chr4 146408818 146409415 -9220705 - L1_Mur1 LINE L1 -577 5309 4717 5 1702 281 338 73 5 chr4 146409547 146409683 -9220437 - B1_Mur3 SINE Alu 0 147 3 5 1702 279 250 0 165 chr4 146409683 146409748 -9220372 - MT2B LTR ERVL -342 259 210 5 1702 1150 265 91 123 chr4 146409704 146409971 -9220149 - RLTR25A LTR ERVK -531 572 334 5 1702 4541 198 40 16 chr4 146409971 146410907 -9219213 - RMER17B LTR ERVK 0 958 1 5 1702 1150 265 91 123 chr4 146410907 146411176 -9218944 - RLTR25A LTR ERVK -770 333 53 5 1702 385 382 24 14 chr4 146411226 146411436 -9218684 - B3 SINE B2 -3 213 2 5 1702 1519 43 11 0 chr4 146411459 146411645 -9218475 - B2_Mm1a SINE B2 -5 188 1 5 1702 1037 89 7 7 chr4 146412170 146412317 -9217803 - B1_Mus2 SINE Alu 0 147 1 5 1702 789 335 38 31 chr4 146413045 146413362 -9216758 - ORR1D2 LTR MaLR -9 361 43 5 1702 430 320 0 15 chr4 146413496 146413626 -9216494 - B1_Mur2 SINE Alu -1 148 21 5 1702 216 330 0 120 chr4 146414544 146414661 -9215459 - ID_B1 SINE B4 -82 142 40 5 1702 315 167 0 0 chr4 146415340 146415406 -9214714 + GA-rich Low_complexity Low_complexity 2 67 0 5 1702 459 0 0 0 chr4 146417266 146417317 -9212803 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1702 416 299 113 0 chr4 146417525 146417719 -9212401 - B3 SINE B2 0 216 1 5 1702 3787 30 5 0 chr4 146418324 146418758 -9211362 - RLTR10C LTR ERVK 0 436 1 5 1702 7716 35 0 1 chr4 146418758 146419695 -9210425 - MMERVK10C-int LTR ERVK 0 7581 6646 5 1702 7244 36 0 0 chr4 146419681 146420565 -9209555 - MMERVK10C-int LTR ERVK -1771 5810 4927 5 1702 19536 41 0 1 chr4 146420563 146422986 -9207134 - MMERVK10C-int LTR ERVK -4292 3289 870 5 1702 2525 90 53 3 chr4 146422984 146423364 -9206756 - MMERVK10C-int LTR ERVK -7182 399 1 5 1702 3761 35 5 0 chr4 146423364 146423798 -9206322 - RLTR10C LTR ERVK 0 436 1 5 1702 4617 89 24 93 chr4 146424000 146424807 -9205313 - RMER17A LTR ERVK 0 751 1 5 1702 1115 82 0 7 chr4 146424897 146425036 -9205084 + B1_Mus1 SINE Alu 1 139 -9 5 1702 255 31 0 0 chr4 146425036 146425068 -9205052 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1702 309 329 32 38 chr4 146428886 146429044 -9201076 - B3 SINE B2 0 216 60 5 1702 393 132 20 5 chr4 146429123 146429237 -9200883 - B2_Mm2 SINE B2 -1 194 46 5 1702 979 137 68 0 chr4 146429268 146429429 -9200691 - B2_Mm2 SINE B2 -22 173 2 5 1702 3574 169 16 29 chr4 146430497 146431180 -9198940 - Lx2 LINE L1 -6 6991 6318 5 1702 1216 140 5 5 chr4 146431745 146434199 -9195921 + MMSAT4 Satellite Satellite 1 2451 0 5 1702 307 333 53 82 chr4 146434679 146434924 -9195196 + RMER15 LTR ERVL 255 492 -83 5 1702 180 133 16 32 chr4 146435218 146435280 -9194840 + A-rich Low_complexity Low_complexity 2 62 0 5 1702 564 15 0 0 chr4 146435329 146435394 -9194726 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1702 4266 207 27 8 chr4 146437741 146437871 -9192249 - Lx2B LINE L1 -402 6598 6467 5 1702 405 0 0 0 chr4 146437871 146437916 -9192204 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1702 4266 191 16 6 chr4 146437916 146438963 -9191157 - Lx2B LINE L1 -534 6466 5405 5 1702 418 252 14 7 chr4 146438959 146439099 -9191021 + MusHAL1 LINE L1 2106 2246 -466 5 1702 423 0 0 0 chr4 146439411 146439458 -9190662 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1702 5005 134 23 6 chr4 146440078 146440874 -9189246 + RMER17D2 LTR ERVK 1 809 0 5 1702 456 19 0 0 chr4 146441208 146441261 -9188859 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1702 432 0 0 0 chr4 146441707 146441755 -9188365 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1702 180 0 0 0 chr4 146442185 146442205 -9187915 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 5 1702 674 227 57 128 chr4 146443077 146443304 -9186816 + B3 SINE B2 5 215 -1 5 1702 1897 42 8 0 chr4 146443313 146443553 -9186567 + L1Md_F2 LINE L1 5345 5586 -297 5 1702 8250 60 1 11 chr4 146443553 146444558 -9185562 + L1Md_F2 LINE L1 5587 6581 -1 5 1702 248 272 18 80 chr4 146444564 146444676 -9185444 + L1M3 LINE L1 5464 5568 -612 5 1702 1198 75 7 0 chr4 146444696 146444843 -9185277 + B1_Mus1 SINE Alu 1 148 0 5 1702 283 106 15 15 chr4 146444843 146444910 -9185210 + (CAAAAA)n Simple_repeat Simple_repeat 6 72 0 5 1702 807 236 7 0 chr4 146444913 146445061 -9185059 + B1_Mur4 SINE Alu 1 149 -1 5 1702 2364 162 19 13 chr4 146445489 146445865 -9184255 + ORR1C1 LTR MaLR 1 378 0 5 1702 3213 61 10 13 chr4 146446750 146447147 -9182973 - MTA_Mm LTR MaLR 0 396 1 5 1702 272 351 35 23 chr4 146448582 146448724 -9181396 - MIR3 SINE MIR -45 163 21 5 1702 21 0 0 0 chr4 146449026 146449047 -9181073 + AT_rich Low_complexity Low_complexity 1 21 0 5 1702 1250 104 39 0 chr4 146449600 146449782 -9180338 + L1_Mus2 LINE L1 6378 6566 0 5 1702 363 44 0 0 chr4 146449861 146449906 -9180214 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1702 947 204 34 29 chr4 146450176 146450383 -9179737 + MTC LTR MaLR 214 421 0 5 1702 239 299 188 20 chr4 146451180 146451430 -9178690 - MLT1E2 LTR MaLR -212 293 1 5 1702 631 209 96 15 chr4 146451965 146452101 -9178019 - B1F SINE Alu -2 147 1 5 1702 1132 180 120 0 chr4 146452163 146452363 -9177757 - URR1A DNA MER1_type -2 224 1 5 1702 210 346 130 9 chr4 146452483 146452699 -9177421 + L3 LINE CR1 3790 4031 -458 5 1702 405 0 0 0 chr4 146452767 146452812 -9177308 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1702 504 0 0 0 chr4 146452812 146452867 -9177253 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1702 259 286 0 83 chr4 146452878 146452961 -9177159 - B4A SINE B4 -14 278 203 5 1702 1627 192 70 39 chr4 146452961 146453319 -9176801 - RLTR17 LTR ERVK 0 692 324 5 1702 1158 200 20 0 chr4 146453508 146453703 -9176417 + B3 SINE B2 2 200 -16 5 1702 252 0 0 0 chr4 146453703 146453731 -9176389 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 5 1702 411 78 0 0 chr4 146453863 146453927 -9176193 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1702 23 33 0 0 chr4 146453988 146454018 -9176102 + AT_rich Low_complexity Low_complexity 1 30 0 5 1702 362 200 53 0 chr4 146454538 146454613 -9175507 - Lx6 LINE L1 -1237 6223 6145 5 1702 468 0 0 0 chr4 146454619 146454671 -9175449 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1702 798 247 124 110 chr4 146454913 146455212 -9174908 - MTEb LTR MaLR 0 379 76 5 1702 3335 185 35 16 chr4 146455212 146455842 -9174278 - RLTR26 LTR ERVK 0 642 1 5 1702 317 206 103 0 chr4 146455842 146455905 -9174215 - MTEb LTR MaLR -305 74 5 5 1702 3556 243 81 60 chr4 146456637 146457382 -9172738 + Lx9 LINE L1 6526 7335 -309 5 1702 280 135 38 19 chr4 146457382 146457435 -9172685 - RLTR26 LTR ERVK -316 326 273 5 1702 3556 243 81 60 chr4 146457435 146457530 -9172590 + Lx9 LINE L1 7336 7440 -204 5 1702 327 104 0 0 chr4 146457530 146457578 -9172542 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1702 3556 243 81 60 chr4 146457578 146457772 -9172348 + Lx9 LINE L1 7441 7636 -8 5 1702 331 302 81 0 chr4 146457803 146457889 -9172231 + B1F SINE Alu 1 93 -56 5 1702 590 113 10 0 chr4 146458648 146458745 -9171375 + (CATA)n Simple_repeat Simple_repeat 2 99 0 5 1702 219 139 0 0 chr4 146459283 146459319 -9170801 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1702 564 53 0 0 chr4 146459379 146459455 -9170665 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1702 2017 202 54 3 chr4 146459529 146459920 -9170200 - Lx6 LINE L1 -983 6477 6067 5 1702 834 196 85 14 chr4 146459908 146460112 -9170008 - Lx6 LINE L1 -174 6006 5755 5 1702 345 125 0 0 chr4 146460470 146460526 -9169594 + (TCC)n Simple_repeat Simple_repeat 2 57 0 5 1702 4567 186 20 17 chr4 146461253 146462153 -9167967 - L1_Mur3 LINE L1 -85 5795 4893 5 1702 4431 64 13 13 chr4 146463009 146463560 -9166560 + L1_Mus1 LINE L1 6017 6567 0 5 1702 15642 147 80 21 chr4 146463646 146467686 -9162434 - Lx4B LINE L1 -19 7039 2744 5 1702 14486 93 10 7 chr4 146467688 146469661 -9160459 + L1VL4 LINE L1 36 2019 -1540 5 1702 2951 52 6 0 chr4 146469661 146470005 -9160115 - ORR1A0 LTR MaLR 0 346 1 5 1702 14486 73 13 6 chr4 146470005 146470822 -9159298 + L1VL4 LINE L1 2020 2841 -718 5 1702 1249 201 75 8 chr4 146470822 146471088 -9159032 - ORR1C1 LTR MaLR -94 284 1 5 1702 1823 232 38 0 chr4 146471558 146471951 -9158169 + MT2A LTR ERVL 3 410 -123 5 1702 573 15 0 0 chr4 146471969 146472035 -9158085 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 5 1702 832 47 0 19 chr4 146472157 146472265 -9157855 - B1_Mus2 SINE Alu -1 146 41 5 1702 332 218 33 44 chr4 146472202 146472293 -9157827 - RLTR25B LTR ERVK -526 502 413 5 1702 846 269 123 63 chr4 146472660 146472977 -9157143 + ORR1D2 LTR MaLR 3 338 -32 5 1702 1839 242 63 6 chr4 146473214 146473709 -9156411 + ORR1D2-int LTR MaLR 11 533 -837 5 1702 557 191 44 0 chr4 146473716 146473834 -9156286 + B3 SINE B2 1 127 -66 5 1702 395 38 19 0 chr4 146473865 146473918 -9156202 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 5 1702 526 248 0 0 chr4 146473921 146474034 -9156086 + ORR1D2-int LTR MaLR 535 647 -723 5 1702 1082 240 140 16 chr4 146474062 146474293 -9155827 + ORR1D2 LTR MaLR 5 273 -97 5 1702 2043 165 41 14 chr4 146474293 146474655 -9155465 - ORR1D1 LTR MaLR -2 372 1 5 1702 1082 240 140 16 chr4 146474655 146474745 -9155375 + ORR1D2 LTR MaLR 274 366 -4 5 1702 1698 138 65 146 chr4 146475159 146475557 -9154563 - ORR1B1 LTR MaLR 0 394 29 6 1702 810 236 6 0 chr4 146475559 146475724 -9154396 + Lx6 LINE L1 6477 6642 -818 6 1702 235 204 0 0 chr4 146475724 146475773 -9154347 + Lx6 LINE L1 6953 7001 -459 6 1702 27 81 0 0 chr4 146476242 146476304 -9153816 + GC_rich Low_complexity Low_complexity 1 62 0 6 1702 1544 48 5 21 chr4 146476952 146477145 -9152975 + B2_Mm1a SINE B2 2 191 -2 6 1702 186 43 0 0 chr4 146479069 146479092 -9151028 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 1702 1206 89 0 0 chr4 146479105 146479262 -9150858 + B2_Mm2 SINE B2 5 161 -34 6 1702 513 0 0 0 chr4 146479262 146479319 -9150801 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 6 1702 2964 220 35 34 chr4 146479325 146479886 -9150234 + Lx7 LINE L1 6990 7543 -153 6 1702 858 70 0 0 chr4 146479886 146480000 -9150120 + (CAATA)n Simple_repeat Simple_repeat 2 115 0 6 1702 2964 220 35 34 chr4 146480000 146480144 -9149976 + Lx7 LINE L1 7544 7696 0 6 1702 1073 257 120 6 chr4 146480159 146480492 -9149628 + MTD LTR MaLR 1 371 -48 6 1702 439 137 17 17 chr4 146480522 146480641 -9149479 + (TCTG)n Simple_repeat Simple_repeat 2 120 0 6 1702 849 185 14 7 chr4 146481151 146481298 -9148822 + B1_Mur3 SINE Alu 1 148 -1 6 1702 353 261 16 102 chr4 146481311 146481439 -9148681 + RMER5 LTR ERV1 14 130 -404 6 1702 369 152 0 0 chr4 146481448 146481507 -9148613 - RMER1A Other Other -920 110 52 6 1702 2138 199 99 4 chr4 146481669 146482144 -9147976 - RMER5 LTR ERV1 0 534 15 6 1702 2102 232 48 21 chr4 146484288 146484306 -9145814 - RMER5 LTR ERV1 0 534 521 6 1702 1366 63 75 0 chr4 146484306 146484480 -9145640 + B2_Mm2 SINE B2 4 190 -5 6 1702 2102 232 48 21 chr4 146484480 146484981 -9145139 - RMER5 LTR ERV1 -14 520 1 6 1702 252 0 0 0 chr4 146485222 146485250 -9144870 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1702 1567 65 0 11 chr4 146485668 146485854 -9144266 + B2_Mm1t SINE B2 2 185 -8 6 1702 1299 234 206 84 chr4 146486577 146486660 -9143460 + MT2A LTR ERVL 1 81 -452 6 1702 240 35 0 0 chr4 146486660 146486689 -9143431 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1702 1299 234 206 84 chr4 146486689 146486800 -9143320 + MT2A LTR ERVL 82 177 -356 6 1702 468 0 0 0 chr4 146486800 146486852 -9143268 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1702 1299 234 206 84 chr4 146486852 146487131 -9142989 + MT2A LTR ERVL 178 531 -2 6 1702 1273 228 19 11 chr4 146487369 146487635 -9142485 + RMER5 LTR ERV1 23 290 -244 6 1702 2395 102 6 12 chr4 146487688 146488017 -9142103 - ORR1A4 LTR MaLR -2 327 1 6 1702 410 271 88 31 chr4 146488037 146488265 -9141855 - RMER17C LTR ERVK -47 363 123 6 1702 521 117 0 0 chr4 146488398 146488475 -9141645 + RMER5 LTR ERV1 458 534 0 6 1702 256 245 50 112 chr4 146488518 146488679 -9141441 + MER4B-int LTR ERV1 50 200 -6558 6 1702 992 184 122 15 chr4 146489160 146489302 -9140818 + URR1A DNA MER1_type 1 167 -59 6 1702 3388 63 2 2 chr4 146489302 146489698 -9140422 - MTA_Mm LTR MaLR 0 396 1 6 1702 992 184 122 15 chr4 146489698 146489759 -9140361 + URR1A DNA MER1_type 168 226 0 6 1702 1098 198 14 19 chr4 146489824 146490035 -9140085 + Lx5 LINE L1 6841 7050 0 6 1702 1592 63 21 0 chr4 146490218 146490407 -9139713 - B2_Mm1t SINE B2 0 193 1 6 1702 855 98 0 0 chr4 146490407 146490530 -9139590 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 6 1702 654 91 0 0 chr4 146490841 146490929 -9139191 + Lx2 LINE L1 6556 6643 -354 6 1702 1233 140 65 0 chr4 146490929 146491143 -9138977 + Lx LINE L1 6427 6654 0 6 1702 225 0 0 0 chr4 146491262 146491287 -9138833 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1702 1280 139 243 26 chr4 146492279 146492712 -9137408 + RMER5 LTR ERV1 1 527 -7 6 1702 5523 112 3 24 chr4 146493107 146493967 -9136153 - L1_Mur1 LINE L1 -366 5520 4679 6 1702 7213 162 4 66 chr4 146493969 146494218 -9135902 + L1_Mur1 LINE L1 3066 3268 -2609 6 1702 1297 41 0 0 chr4 146494218 146494365 -9135755 + B1_Mm SINE Alu 1 147 0 6 1702 8259 99 4 14 chr4 146494365 146495596 -9134524 + L1_Mur1 LINE L1 3254 4463 -1423 6 1702 1032 97 18 18 chr4 146495591 146495759 -9134361 + L1_Mus3 LINE L1 6469 6636 -2 6 1702 1633 101 0 0 chr4 146495774 146496001 -9134119 + L1_Mur1 LINE L1 4449 4675 -1211 6 1702 329 270 16 23 chr4 146496061 146496190 -9133930 - L1_Rod LINE L1 -36 5811 5684 6 1702 1544 172 22 0 chr4 146496186 146496459 -9133661 - Lx3B LINE L1 -519 6454 6176 6 1702 4205 143 29 10 chr4 146496451 146497187 -9132933 - Lx4A LINE L1 -750 6308 5545 6 1702 279 0 0 0 chr4 146497187 146497218 -9132902 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1702 2619 144 54 5 chr4 146497218 146497349 -9132771 - Lx4A LINE L1 -333 5544 5409 6 1702 2652 177 12 4 chr4 146497360 146497866 -9132254 + L1_Mur2 LINE L1 4815 5324 -553 6 1702 571 289 43 25 chr4 146497880 146498085 -9132035 - RMER1A Other Other -845 185 19 6 1702 1306 116 5 0 chr4 146498085 146498274 -9131846 - BGLII LTR ERVK -231 190 1 6 1702 1560 235 32 32 chr4 146498275 146498741 -9131379 - RMER3D-int LTR ERVK -1 2841 2376 6 1702 515 77 13 0 chr4 146498744 146498822 -9131298 - L1Md_F2 LINE L1 -2 6580 6502 6 1702 27 0 0 0 chr4 146499067 146499094 -9131026 + GC_rich Low_complexity Low_complexity 1 27 0 6 1702 209 200 0 0 chr4 146500000 146500050 -9130070 + T-rich Low_complexity Low_complexity 5 54 0 1 1702 1070 90 0 0 chr4 146500051 146500195 -9129925 - B1_Mm SINE Alu -2 145 2 2 1702 230 0 33 0 chr4 146500623 146500653 -9129467 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1702 1060 67 0 7 chr4 146500654 146500790 -9129330 - B1_Mm SINE Alu -12 135 1 4 1702 252 310 42 0 chr4 146501089 146501160 -9128960 - RLTR18B LTR ERVK -7 505 432 5 1702 273 332 113 74 chr4 146501311 146501526 -9128594 - RMER21B LTR ERV1 -278 564 341 6 1702 1293 310 77 44 chr4 146501526 146502120 -9128000 - RLTR18 LTR ERVK -2 614 1 7 1702 298 239 3 70 chr4 146502293 146502385 -9127735 + B1_Mm SINE Alu 26 116 -33 8 1702 1161 307 65 2 chr4 146503025 146503459 -9126661 - Lx6 LINE L1 -826 6634 6174 9 1702 2364 226 79 72 chr4 146503592 146504361 -9125759 + RLTR40 LTR ERVK 1 775 -42 1 1702 1322 83 0 13 chr4 146504832 146505137 -9124983 + (TTTC)n Simple_repeat Simple_repeat 1 301 0 1 1702 21 0 0 0 chr4 146505391 146505412 -9124708 + AT_rich Low_complexity Low_complexity 1 21 0 1 1702 276 130 0 0 chr4 146505944 146505990 -9124130 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 1 1702 2103 151 104 130 chr4 146506912 146507489 -9122631 - LTRIS2 LTR ERV1 0 564 3 1 1702 520 331 108 14 chr4 146508980 146509341 -9120779 - Lx8 LINE L1 -602 6871 6477 1 1702 1179 55 0 0 chr4 146509649 146509795 -9120325 - B1_Mm SINE Alu 0 147 2 1 1702 2557 231 19 111 chr4 146509821 146510589 -9119531 - RMER6A LTR ERVK -2 754 57 1 1702 1077 116 0 0 chr4 146511051 146511198 -9118922 - B1_Mus1 SINE Alu -1 147 1 1 1702 239 241 0 0 chr4 146511287 146511345 -9118775 - L1MDa LINE L1 -4741 1892 1835 1 1702 719 65 187 0 chr4 146512565 146512688 -9117432 - B2_Mm2 SINE B2 0 195 50 2 1702 336 127 0 0 chr4 146513477 146513532 -9116588 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 1702 207 100 0 0 chr4 146513576 146513606 -9116514 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1702 225 94 0 0 chr4 146514170 146514202 -9115918 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1702 13398 136 32 40 chr4 146514582 146515854 -9114266 - Lx2 LINE L1 -388 6609 5282 2 1702 5681 115 6 1 chr4 146515854 146516700 -9113420 - L1_Mus3 LINE L1 -6 6632 5783 2 1702 13398 132 29 75 chr4 146516700 146516728 -9113392 - Lx2 LINE L1 -602 5281 5255 2 1702 1064 97 0 7 chr4 146516728 146516873 -9113247 - B1_Mus2 SINE Alu -1 146 3 2 1702 13398 132 29 75 chr4 146516873 146517011 -9113109 - Lx2 LINE L1 -629 5254 5136 2 1702 213 39 0 0 chr4 146517011 146517037 -9113083 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2 1702 1199 70 6 0 chr4 146517037 146517195 -9112925 - B2_Mm1t SINE B2 -33 160 2 2 1702 13398 132 29 75 chr4 146517195 146519161 -9110959 - Lx2 LINE L1 -748 5135 3156 2 1702 924 306 106 30 chr4 146519230 146519631 -9110489 - RLTR18 LTR ERVK -85 531 102 2 1702 249 33 0 0 chr4 146519631 146519661 -9110459 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1702 924 307 97 60 chr4 146519661 146519716 -9110404 - RLTR18 LTR ERVK -408 104 45 2 1702 222 37 0 0 chr4 146519716 146519743 -9110377 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1702 1013 78 0 48 chr4 146519746 146519893 -9110227 - B1_Mm SINE Alu -6 141 2 3 1702 316 309 83 104 chr4 146519893 146519935 -9110185 - RLTR18 LTR ERVK -468 44 2 2 1702 1036 315 11 3 chr4 146520210 146520570 -9109550 - Lx6 LINE L1 -828 6632 6270 3 1702 301 200 57 0 chr4 146520767 146520837 -9109283 + RLTR40 LTR ERVK 1 74 -743 3 1702 921 220 47 39 chr4 146520831 146521204 -9108916 + RLTR40 LTR ERVK 447 775 -42 3 1702 216 0 0 0 chr4 146521258 146521282 -9108838 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1702 222 233 0 0 chr4 146521690 146521750 -9108370 + T-rich Low_complexity Low_complexity 1 60 0 3 1702 225 187 31 62 chr4 146521840 146521937 -9108183 - L1_Mur3 LINE L1 -4451 1429 1336 3 1702 181 75 24 24 chr4 146521978 146522019 -9108101 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1702 180 111 0 0 chr4 146522594 146522621 -9107499 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1702 27 49 0 0 chr4 146523107 146523148 -9106972 + AT_rich Low_complexity Low_complexity 1 41 0 4 1702 211 0 88 0 chr4 146525465 146525499 -9104621 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 4 1702 1181 55 7 0 chr4 146525517 146525662 -9104458 - B1_Mm SINE Alu -1 146 1 4 1702 388 308 7 34 chr4 146525766 146525914 -9104206 - Lx8 LINE L1 -861 6612 6469 4 1702 394 351 80 26 chr4 146525952 146526490 -9103630 - L1M2 LINE L1 -1785 4358 3792 4 1702 262 264 0 27 chr4 146527083 146527157 -9102963 + (TATG)n Simple_repeat Simple_repeat 1 72 0 4 1702 585 0 0 0 chr4 146527176 146527241 -9102879 + (TTTC)n Simple_repeat Simple_repeat 1 65 0 4 1702 7967 165 31 8 chr4 146527698 146530089 -9100031 - Lx3A LINE L1 -53 6928 4472 4 1702 238 308 0 0 chr4 146530223 146530257 -9099863 - ORR1A3-int LTR MaLR -1096 867 752 4 1702 298 340 68 0 chr4 146530257 146530360 -9099760 - B1_Mur3 SINE Alu -37 112 3 4 1702 843 218 19 118 chr4 146530384 146530655 -9099465 - RLTR25B LTR ERVK -531 572 329 5 1702 2894 226 47 8 chr4 146530657 146531298 -9098822 - RMER17B LTR ERVK -4 954 289 5 1702 1676 136 64 4 chr4 146532030 146532311 -9097809 - RMER17B LTR ERVK -660 298 1 5 1702 1063 227 13 114 chr4 146532342 146532650 -9097470 - RLTR25B LTR ERVK -697 331 55 5 1702 287 258 0 0 chr4 146532839 146532905 -9097215 - B3A SINE B2 -131 67 2 5 1702 1158 283 41 32 chr4 146534166 146534506 -9095614 + MTEb LTR MaLR 1 343 -36 5 1702 212 0 36 0 chr4 146534513 146534541 -9095579 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 5 1702 402 306 88 8 chr4 146534575 146534700 -9095420 - RSINE1 SINE B4 -28 137 3 5 1702 434 287 144 22 chr4 146534895 146535173 -9094947 - MLT1B LTR MaLR -19 371 60 5 1702 1119 200 43 0 chr4 146535247 146535457 -9094663 + RLTR20D LTR ERVK 1 219 -349 5 1702 489 233 19 0 chr4 146535464 146535567 -9094553 - B1_Mur3 SINE Alu -14 135 31 5 1702 300 271 2 60 chr4 146536044 146536151 -9093969 + ID_B1 SINE B4 70 166 -58 5 1702 310 219 40 40 chr4 146536083 146536159 -9093961 + PB1D7 SINE Alu 18 93 -27 6 1702 200 132 26 0 chr4 146536159 146536197 -9093923 + A-rich Low_complexity Low_complexity 1 39 0 6 1702 336 333 39 23 chr4 146536444 146536573 -9093547 - B3 SINE B2 -85 131 1 6 1702 3635 149 20 2 chr4 146537221 146537831 -9092289 - Lx LINE L1 -9 6645 6025 6 1702 456 281 7 41 chr4 146538000 146538145 -9091975 - B1_Mur1 SINE Alu 0 149 10 6 1702 232 303 54 150 chr4 146538005 146538172 -9091948 - B4 SINE B4 -69 223 73 6 1702 21 0 0 0 chr4 146538259 146538280 -9091840 + AT_rich Low_complexity Low_complexity 1 21 0 6 212 286 338 0 0 chr4 146538445 146538522 -9091598 + B3 SINE B2 7 83 -133 6 1703 1028 98 6 30 chr4 146538910 146539079 -9091041 - L1Md_F2 LINE L1 -1 6581 6417 6 1703 886 197 9 69 chr4 146539702 146539920 -9090200 - RMER10B LTR ERVL 0 398 194 6 1703 436 256 66 96 chr4 146539842 146540189 -9089931 + RMER6A LTR ERVK 409 751 -5 7 1703 1474 176 270 38 chr4 146540541 146540915 -9089205 + RMER6B LTR ERVK 1 461 0 7 1703 2313 220 102 65 chr4 146541128 146541673 -9088447 + RLTR40 LTR ERVK 22 584 -233 7 1703 459 0 0 0 chr4 146541673 146541724 -9088396 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1703 600 14 0 0 chr4 146541724 146541792 -9088328 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1703 2313 220 102 65 chr4 146541792 146542003 -9088117 + RLTR40 LTR ERVK 585 806 -11 7 1703 180 0 0 0 chr4 146542041 146542061 -9088059 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1703 312 48 0 0 chr4 146543306 146543348 -9086772 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 1703 614 208 173 13 chr4 146544788 146544944 -9085176 - RMER17C-int LTR ERVK -3056 182 2 7 1703 1816 175 21 52 chr4 146544946 146545369 -9084751 - RMER17C LTR ERVK 0 410 1 7 1703 737 317 105 5 chr4 146545469 146545916 -9084204 - Lx8 LINE L1 -518 6955 6464 7 1703 1096 167 5 0 chr4 146546064 146546250 -9083870 - RMER6A LTR ERVK 0 756 570 7 1703 748 105 15 8 chr4 146546257 146546391 -9083729 - L1_Mus3 LINE L1 0 6638 6504 8 1703 286 286 115 94 chr4 146547191 146547426 -9082694 - RLTR13D3 LTR ERVK -874 240 1 8 1703 1249 298 24 20 chr4 146547511 146548272 -9081848 - MMTV-int LTR ERVK -83 7170 6484 8 1703 433 265 8 25 chr4 146548508 146548628 -9081492 - RLTR25A LTR ERVK -303 800 683 8 1703 522 103 0 0 chr4 146548714 146548792 -9081328 + (TC)n Simple_repeat Simple_repeat 2 79 0 8 1703 2955 154 33 4 chr4 146548808 146549317 -9080803 - Lx3A LINE L1 -7 6974 6451 8 1703 289 175 0 17 chr4 146549333 146549391 -9080729 + Lx3A LINE L1 6078 6134 -847 8 1703 2213 89 180 16 chr4 146550276 146550653 -9079467 - RLTR44E LTR ERVK -13 439 1 8 1703 878 96 3 7 chr4 146550662 146550809 -9079311 - B1_Mus2 SINE Alu -5 144 1 8 1703 431 205 24 97 chr4 146550707 146550831 -9079289 - MT2B LTR ERVL -344 257 143 8 1703 2130 209 7 2 chr4 146551666 146552121 -9077999 - Lx2 LINE L1 0 6997 6541 9 1703 391 171 11 0 chr4 146552121 146552209 -9077911 - Lx2 LINE L1 -578 6419 6331 9 1703 1238 122 24 4 chr4 146552802 146554183 -9075937 + MMSAT4 Satellite Satellite 1 1408 0 9 1703 243 402 10 0 chr4 146554720 146554817 -9075303 + RMER15 LTR ERVL 241 338 -237 9 1703 1889 143 10 10 chr4 146555511 146555822 -9074298 - RLTR10E LTR ERVK 0 311 1 9 1703 1558 107 4 0 chr4 146555822 146556047 -9074073 - MMERVK10C-int LTR ERVK 0 7581 7356 9 1703 357 322 43 11 chr4 146556613 146556798 -9073322 - SRV_MM-int LTR ERVK -899 5268 5078 9 1703 819 257 10 26 chr4 146556789 146556981 -9073139 - ETnERV2-int LTR ERVK -2091 5315 5127 9 1703 1877 229 44 42 chr4 146557052 146557093 -9073027 - ETnERV2-int LTR ERVK -2872 4534 4495 9 1703 1703 16 0 0 chr4 146557093 146557279 -9072841 + B2_Mm1a SINE B2 2 187 -6 9 1703 1877 265 45 41 chr4 146557279 146557950 -9072170 - ETnERV2-int LTR ERVK -2912 4494 4083 9 1703 2539 173 27 28 chr4 146557972 146558562 -9071558 - RMER16-int LTR ERVK -2567 2839 2303 9 1703 4490 209 30 40 chr4 146558554 146558699 -9071421 - ETnERV2-int LTR ERVK -4656 2750 2601 9 1703 1360 92 11 0 chr4 146558699 146558884 -9071236 + B2_Mm1a SINE B2 2 188 -5 9 1703 4490 209 30 40 chr4 146558884 146559772 -9070348 - ETnERV2-int LTR ERVK -4806 2600 1727 9 1703 2264 161 135 39 chr4 146559785 146560295 -9069825 - ETnERV2-int LTR ERVK -4592 814 256 9 1703 25 0 0 0 chr4 146560577 146560602 -9069518 + AT_rich Low_complexity Low_complexity 1 25 0 9 1703 258 171 0 0 chr4 146560649 146560690 -9069430 - ETnERV2-int LTR ERVK -7948 269 229 9 1703 1006 243 123 37 chr4 146564686 146565092 -9065028 - RMER10A LTR ERVL -1 441 1 1 1703 736 212 20 15 chr4 146565184 146565385 -9064735 + Lx2B LINE L1 6011 6212 -788 1 1703 635 165 14 36 chr4 146565385 146565523 -9064597 + ORR1A3 LTR MaLR 183 317 -9 1 1703 1148 75 0 7 chr4 146566293 146566441 -9063679 + B1_Mus2 SINE Alu 1 147 0 1 1703 678 131 8 62 chr4 146566619 146566635 -9063485 - Lx LINE L1 -619 6035 6023 1 1703 7749 38 38 1 chr4 146566635 146567559 -9062561 + RLTR13A2 LTR ERVK 1 958 0 1 1703 678 131 8 62 chr4 146567559 146567672 -9062448 - Lx LINE L1 -632 6022 5913 1 1703 3658 133 13 23 chr4 146567672 146568274 -9061846 + Lx LINE L1 6043 6638 -16 1 1703 528 16 0 0 chr4 146568493 146568554 -9061566 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1703 5445 181 44 46 chr4 146569533 146570649 -9059471 - RLTR13D3 LTR ERVK 0 1114 1 1 1703 599 264 87 11 chr4 146570822 146570843 -9059277 + B3 SINE B2 1 23 -193 1 1703 1220 111 44 0 chr4 146570843 146571023 -9059097 + B2_Mm2 SINE B2 5 192 -3 1 1703 599 264 87 11 chr4 146571023 146571185 -9058935 + B3 SINE B2 24 198 -18 1 1703 235 236 18 30 chr4 146571459 146571625 -9058495 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 1703 976 153 0 6 chr4 146571724 146571895 -9058225 + B2_Mm2 SINE B2 2 171 -24 1 1703 374 294 150 17 chr4 146572042 146572215 -9057905 + B3A SINE B2 3 198 0 1 1703 319 297 36 9 chr4 146572498 146572610 -9057510 + PB1D10 SINE Alu 1 115 -2 1 1703 1047 197 40 0 chr4 146572610 146572808 -9057312 + B3 SINE B2 1 206 -10 1 1703 484 205 24 20 chr4 146572946 146573119 -9057001 + B3A SINE B2 1 174 -19 1 1703 198 0 0 0 chr4 146573674 146573696 -9056424 + (TGG)n Simple_repeat Simple_repeat 3 24 0 1 1703 264 111 0 0 chr4 146574392 146574437 -9055683 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 1 1703 253 312 62 12 chr4 146574459 146574540 -9055580 - B1F2 SINE Alu -64 85 1 1 1703 21 71 0 0 chr4 146574630 146574672 -9055448 + AT_rich Low_complexity Low_complexity 1 42 0 1 1703 1208 61 0 0 chr4 146574709 146574856 -9055264 - B1_Mm SINE Alu 0 147 1 1 1703 1072 53 68 0 chr4 146575198 146575331 -9054789 + B1_Mm SINE Alu 2 143 -4 1 1703 667 234 14 0 chr4 146575648 146575793 -9054327 + B1_Mus1 SINE Alu 2 148 0 1 1703 2045 117 3 67 chr4 146576689 146577047 -9053073 + IAPLTR1a_Mm LTR ERVK 1 335 -2 1 1703 59398 12 2 0 chr4 146577047 146583506 -9046614 + IAPEz-int LTR ERVK 9 6481 0 1 1703 1993 115 11 68 chr4 146583506 146583861 -9046259 + IAPLTR1a_Mm LTR ERVK 1 335 -2 1 1703 588 289 101 11 chr4 146584084 146584273 -9045847 + MT2A LTR ERVL 183 388 -145 1 1703 240 149 0 0 chr4 146584877 146584924 -9045196 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 1703 7137 38 0 4 chr4 146585492 146586317 -9043803 - RLTR13B2 LTR ERVK 0 822 1 1 1703 186 191 0 0 chr4 146586327 146586369 -9043751 + T-rich Low_complexity Low_complexity 1 42 0 1 1703 1144 88 0 0 chr4 146586372 146586519 -9043601 - B1_Mus1 SINE Alu 0 148 2 1 1703 1393 84 21 5 chr4 146587725 146587916 -9042204 - B2_Mm2 SINE B2 0 195 2 1 1703 385 223 31 2 chr4 146588682 146588780 -9041340 - Lx2B LINE L1 -101 6907 6804 1 1703 2462 147 18 18 chr4 146588889 146589326 -9040794 - BGLII_B LTR ERVK -1 440 4 1 1703 3504 205 58 31 chr4 146589394 146590300 -9039820 - MYSERV16_I-int LTR ERVK -78 2248 1316 1 1703 1693 31 0 0 chr4 146590300 146590493 -9039627 - B2_Mm1a SINE B2 0 193 1 1 1703 3504 205 58 31 chr4 146590493 146590547 -9039573 - MYSERV16_I-int LTR ERVK -1011 1315 1262 1 1703 548 271 12 55 chr4 146590540 146590704 -9039416 - MYSERV16_I-int LTR ERVK -1246 1080 924 1 1703 5348 229 29 35 chr4 146590678 146591896 -9038224 - MYSERV6-int LTR ERVK -4623 4336 3125 1 1703 899 146 14 14 chr4 146591896 146592042 -9038078 - B1_Mus1 SINE Alu -1 147 2 1 1703 5348 229 29 35 chr4 146592042 146592152 -9037968 - MYSERV6-int LTR ERVK -5835 3124 3016 1 1703 1642 139 0 57 chr4 146592159 146592494 -9037626 - BGLII_B LTR ERVK -125 316 1 1 1703 308 232 0 0 chr4 146592881 146592936 -9037184 - RLTR13C1 LTR ERVK 0 983 929 1 1703 1645 50 5 0 chr4 146592936 146593156 -9036964 + RLTR4_Mm LTR ERV1 1 221 -521 1 1703 382 125 38 0 chr4 146593137 146593217 -9036903 + RLTR4_Mm LTR ERV1 161 243 -499 1 1703 1958 77 17 7 chr4 146593223 146593512 -9036608 + RLTR4_Mm LTR ERV1 451 742 0 1 1703 59720 72 6 2 chr4 146593512 146601082 -9029038 + RLTR4_MM-int LTR ERV1 1 7601 0 1 1703 1645 50 5 0 chr4 146601082 146601302 -9028818 + RLTR4_Mm LTR ERV1 1 221 -521 1 1703 382 125 38 0 chr4 146601283 146601363 -9028757 + RLTR4_Mm LTR ERV1 161 243 -499 1 1703 1958 77 17 7 chr4 146601369 146601658 -9028462 + RLTR4_Mm LTR ERV1 451 742 0 1 1703 532 135 0 0 chr4 146601660 146601749 -9028371 - RLTR13C1 LTR ERVK -53 930 842 1 1703 22 0 0 0 chr4 146601842 146601864 -9028256 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 1626 234 99 110 chr4 146601941 146602756 -9027364 + RLTR40 LTR ERVK 1 806 -11 1 1703 998 71 7 0 chr4 146603226 146603366 -9026754 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 1 1703 186 118 0 0 chr4 146604164 146604198 -9025922 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 1 1703 567 0 0 0 chr4 146605242 146605305 -9024815 + (GAAAA)n Simple_repeat Simple_repeat 2 64 0 1 1703 294 138 0 0 chr4 146605922 146605980 -9024140 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1703 1147 49 35 0 chr4 146605981 146606124 -9023996 - B1_Mus1 SINE Alu 0 148 1 1 1703 781 329 93 13 chr4 146606677 146607130 -9022990 - Lx8 LINE L1 -519 6954 6466 1 1703 1440 205 29 120 chr4 146607428 146607634 -9022486 - RMER6A LTR ERVK 0 756 577 1 1703 1100 76 14 0 chr4 146607634 146607778 -9022342 - B1_Mus2 SINE Alu 0 147 2 1 1703 1440 205 29 120 chr4 146607778 146608014 -9022106 - RMER6A LTR ERVK -180 576 354 1 1703 1641 42 0 0 chr4 146608674 146608867 -9021253 - B2_Mm1a SINE B2 0 193 1 1 1703 886 308 84 24 chr4 146609374 146609837 -9020283 - Lx8 LINE L1 -519 6954 6464 1 1703 3449 114 4 6 chr4 146609999 146610511 -9019609 + L1_Mus3 LINE L1 6128 6638 0 1 1703 1828 185 16 96 chr4 146610658 146610872 -9019248 - RMER6A LTR ERVK 0 756 580 1 1703 764 88 173 16 chr4 146610872 146610999 -9019121 - B1_Mus1 SINE Alu 0 148 2 1 1703 1828 185 16 96 chr4 146610999 146611275 -9018845 - RMER6A LTR ERVK -177 579 305 1 1703 1059 220 14 34 chr4 146611305 146611601 -9018519 - RMER6A LTR ERVK -411 345 56 1 1703 327 339 16 53 chr4 146611993 146612183 -9017937 - L1MEg LINE L1 -4596 1488 1306 1 1703 232 345 14 21 chr4 146613707 146613852 -9016268 - Lx8 LINE L1 -861 6612 6469 1 1703 333 377 41 37 chr4 146613890 146614455 -9015665 - L1M2 LINE L1 -1785 4358 3792 1 1703 216 167 0 0 chr4 146615019 146615067 -9015053 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 1703 21 36 0 0 chr4 146615525 146615553 -9014567 + AT_rich Low_complexity Low_complexity 1 28 0 1 1703 5983 167 42 12 chr4 146615560 146617555 -9012565 - Lx3B LINE L1 -54 6919 4857 1 1703 21 71 0 0 chr4 146617931 146617973 -9012147 + AT_rich Low_complexity Low_complexity 1 42 0 1 1703 251 343 74 17 chr4 146618217 146618392 -9011728 + Tigger1 DNA MER2_type 1940 2124 -294 1 1703 554 335 9 24 chr4 146618475 146618686 -9011434 + B3 SINE B2 9 216 0 1 1703 3387 28 0 25 chr4 146619268 146619674 -9010446 - MTA_Mm LTR MaLR 0 396 1 1 1703 9088 34 11 0 chr4 146619674 146620758 -9009362 - MTA_Mm-int LTR MaLR 0 1098 3 1 1703 3604 16 136 0 chr4 146620762 146621196 -9008924 - MT2_Mm LTR ERVL 0 493 1 1 1703 427 255 62 55 chr4 146621606 146621877 -9008243 - RLTR25A LTR ERVK 0 1028 700 1 1703 197 108 0 26 chr4 146622005 146622043 -9008077 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1 1703 7198 126 44 68 chr4 146622047 146623980 -9006140 - Lx3A LINE L1 -6 6975 5109 1 1703 1103 82 14 0 chr4 146623980 146624126 -9005994 - B1_Mus1 SINE Alu 0 148 1 1 1703 7198 109 7 44 chr4 146624126 146624520 -9005600 - Lx3A LINE L1 -778 5108 4717 1 1703 2178 84 27 0 chr4 146624746 146625044 -9005076 + L1_Mus1 LINE L1 6249 6554 -13 1 1703 24 32 0 0 chr4 146625069 146625100 -9005020 + AT_rich Low_complexity Low_complexity 1 31 0 1 1703 229 250 29 14 chr4 146626125 146626194 -9003926 - Lx8 LINE L1 -764 6709 6640 1 1703 830 311 40 34 chr4 146626208 146626531 -9003589 - ORR1D2 LTR MaLR -3 367 43 1 1703 219 353 0 23 chr4 146626644 146626731 -9003389 - B1_Mur2 SINE Alu -1 148 64 1 1703 258 349 97 12 chr4 146629385 146629724 -9000396 + Tigger1 DNA MER2_type 1711 2078 -340 1 1703 797 88 0 0 chr4 146629708 146629821 -9000299 - B2_Mm1t SINE B2 -7 186 74 1 1703 22 0 0 0 chr4 146630464 146630486 -8999634 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 236 53 0 26 chr4 146630644 146630683 -8999437 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1703 971 68 29 36 chr4 146630683 146630821 -8999299 - B1_Mus2 SINE Alu -9 138 2 1 1703 2218 173 34 7 chr4 146631721 146632163 -8997957 - Lx2 LINE L1 -3 6994 6541 1 1703 502 125 11 0 chr4 146632163 146632251 -8997869 - Lx2 LINE L1 -578 6419 6331 1 1703 198 0 0 0 chr4 146632475 146632497 -8997623 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1703 1190 178 8 1 chr4 146632870 146633484 -8996636 + MMSAT4 Satellite Satellite 1 618 0 1 1703 581 333 77 10 chr4 146634034 146634346 -8995774 + RMER15 LTR ERVL 241 573 -2 1 1703 360 264 43 11 chr4 146634399 146634491 -8995629 + URR1B DNA MER1_type 2 96 -129 1 1703 37 0 0 0 chr4 146636902 146636939 -8993181 + AT_rich Low_complexity Low_complexity 1 37 0 1 1703 6431 96 3 78 chr4 146636961 146638085 -8992035 - L1_Mus1 LINE L1 -59 6508 5412 1 1703 1041 36 22 0 chr4 146638085 146638222 -8991898 - B1_Mus1 SINE Alu 0 148 9 1 1703 6431 96 3 78 chr4 146638222 146638617 -8991503 - L1_Mus1 LINE L1 -59 5411 5025 1 1703 7685 86 5 15 chr4 146638616 146639784 -8990336 + L1_Mm LINE L1 3959 5115 -768 1 1703 1271 106 0 0 chr4 146639784 146639973 -8990147 + L1_Mm LINE L1 4860 5048 -835 1 1703 403 240 0 0 chr4 146640045 146640141 -8989979 - L1_Mur2 LINE L1 -1739 4138 4043 1 1703 5103 235 15 11 chr4 146640141 146641313 -8988807 - MYSERV6-int LTR ERVK -5092 3867 2691 1 1703 194 0 39 0 chr4 146641313 146641339 -8988781 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1703 5103 235 15 11 chr4 146641339 146641480 -8988640 - MYSERV6-int LTR ERVK -6269 2690 2549 1 1703 3132 28 0 0 chr4 146642827 146643184 -8986936 + IAPEY2_LTR LTR ERVK 1 357 0 1 1703 700 146 50 50 chr4 146643184 146643343 -8986777 + IAPLTR4_I LTR ERVK 22 180 -1290 1 1703 8344 131 16 41 chr4 146643342 146644838 -8985282 + IAPEY3-int LTR ERVK 524 1982 -5698 1 1703 3356 67 9 0 chr4 146644815 146645263 -8984857 + IAPEY3-int LTR ERVK 2238 2689 -4991 1 1703 203 368 44 0 chr4 146645278 146645392 -8984728 + L3b LINE CR1 335 453 -29 1 1703 2803 108 16 31 chr4 146645392 146646046 -8984074 + IAPEY3-int LTR ERVK 6984 7581 0 1 1703 2878 32 0 0 chr4 146646046 146646391 -8983729 + IAPEY2_LTR LTR ERVK 1 345 -12 1 1703 200 79 53 0 chr4 146647698 146647736 -8982384 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1703 1162 68 0 0 chr4 146647736 146647883 -8982237 - B1_Mm SINE Alu 0 147 1 1 1703 1113 255 126 40 chr4 146648050 146648454 -8981666 - RMER10A LTR ERVL -3 439 1 1 1703 666 207 20 15 chr4 146648550 146648746 -8981374 + Lx2B LINE L1 6016 6212 -788 1 1703 675 141 38 30 chr4 146648746 146648878 -8981242 + ORR1A1 LTR MaLR 202 334 -12 2 1703 673 171 0 0 chr4 146654125 146654248 -8975872 - Lx LINE L1 -619 6035 5913 2 1703 3818 128 14 2 chr4 146654248 146654837 -8975283 + Lx LINE L1 6043 6638 -16 2 1703 557 28 14 0 chr4 146655057 146655128 -8974992 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1703 5222 196 45 42 chr4 146656111 146657219 -8972901 - RLTR13D3 LTR ERVK 0 1114 4 2 1703 1146 102 40 0 chr4 146657420 146657597 -8972523 + B2_Mm2 SINE B2 4 187 -8 2 1703 700 240 75 38 chr4 146657597 146657783 -8972337 + B3 SINE B2 24 216 0 2 1703 21 71 0 0 chr4 146657802 146657844 -8972276 + AT_rich Low_complexity Low_complexity 1 42 0 2 1703 193 312 61 44 chr4 146658216 146658330 -8971790 - L2a LINE L2 -6 3420 3305 2 1703 762 204 29 0 chr4 146658663 146658800 -8971320 + B1_Mus2 SINE Alu 2 142 -5 2 1703 180 0 0 0 chr4 146658806 146658826 -8971294 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1703 256 254 0 29 chr4 146659121 146659190 -8970930 - ID4_ SINE ID -14 69 3 2 1703 751 179 50 0 chr4 146659296 146659436 -8970684 + B1_Mus2 SINE Alu 1 147 0 2 1703 900 224 34 19 chr4 146659449 146659658 -8970462 - B3 SINE B2 -4 212 1 2 1703 214 278 59 49 chr4 146659661 146659763 -8970357 + MIR SINE MIR 125 227 -35 2 1703 638 296 19 37 chr4 146659908 146660122 -8969998 - ID_B1 SINE B4 -2 222 13 2 1703 835 226 34 29 chr4 146660168 146660373 -8969747 - B3 SINE B2 -10 206 1 2 1703 3307 223 33 25 chr4 146660615 146661604 -8968516 - L1_Mur2 LINE L1 -1062 4815 3819 2 1703 3054 180 11 33 chr4 146661605 146662219 -8967901 + MT2B LTR ERVL 1 601 0 2 1703 723 165 41 102 chr4 146662233 146662429 -8967691 - B2_Mm2 SINE B2 -9 186 3 2 1703 251 154 0 0 chr4 146662432 146662471 -8967649 - L1_Mm LINE L1 -2065 3818 3780 2 1703 1578 184 19 97 chr4 146662468 146662583 -8967537 - L1_Mur2 LINE L1 -2326 3551 3476 2 1703 1092 88 0 26 chr4 146662583 146662734 -8967386 - B1_Mm SINE Alu 0 147 1 2 1703 1578 184 19 97 chr4 146662734 146663082 -8967038 - L1_Mur2 LINE L1 -2402 3475 3124 2 1703 458 279 48 12 chr4 146663111 146663278 -8966842 - Lx2B LINE L1 -6 6994 6822 2 1703 2467 153 16 18 chr4 146663395 146663834 -8966286 - BGLII_B LTR ERVK 0 441 4 2 1703 5256 241 84 62 chr4 146663899 146667459 -8962661 - MYSERV6-int LTR ERVK -1924 4626 30 2 1703 189 0 0 0 chr4 146667459 146667480 -8962640 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1703 801 154 27 27 chr4 146667482 146667629 -8962491 - B1_Mus1 SINE Alu 0 148 2 2 1703 5183 242 36 27 chr4 146667629 146667724 -8962396 - MYSERV6-int LTR ERVK -5849 3110 3028 2 1703 1855 121 3 57 chr4 146667743 146668077 -8962043 - BGLII_B LTR ERVK -125 316 1 2 212 5092 190 40 34 chr4 146668475 146669583 -8960537 - RLTR13D3 LTR ERVK 0 1114 1 2 1704 396 0 0 0 chr4 146670673 146670717 -8959403 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 1704 406 240 36 101 chr4 146671036 146671055 -8959065 + MT2B LTR ERVL 149 158 -443 2 1704 914 148 7 21 chr4 146671055 146671200 -8958920 + B1_Mus1 SINE Alu 1 143 -5 2 1704 1142 139 17 0 chr4 146671388 146671568 -8958552 + B2_Mm2 SINE B2 1 183 -12 2 1704 212 302 0 0 chr4 146672070 146672123 -8957997 + PB1D10 SINE Alu 34 86 -31 2 1704 385 130 29 29 chr4 146673518 146673621 -8956499 + L1_Mur2 LINE L1 3662 3764 -2113 2 1704 355 252 26 9 chr4 146673616 146673732 -8956388 - Lx7 LINE L1 -6 7690 7573 2 1704 252 77 0 0 chr4 146673734 146673773 -8956347 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1704 270 325 36 0 chr4 146674095 146674178 -8955942 - RLTR18B LTR ERVK 0 512 427 2 1704 412 296 38 38 chr4 146674360 146674543 -8955577 - RMER21B LTR ERV1 -335 507 325 2 1704 1427 289 45 34 chr4 146674602 146675107 -8955013 - RLTR18 LTR ERVK -105 511 1 2 1704 1569 43 0 0 chr4 146675186 146675370 -8954750 - B2_Mm1t SINE B2 -8 185 2 2 1704 2137 131 169 24 chr4 146675407 146675828 -8954292 - RLTR45 LTR ERVK 0 482 1 2 1704 270 280 0 62 chr4 146675899 146675979 -8954141 + B1_Mm SINE Alu 26 100 -47 2 1704 1002 121 0 0 chr4 146676595 146676752 -8953368 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 1704 1031 313 69 2 chr4 146676780 146677212 -8952908 - Lx6 LINE L1 -826 6634 6174 2 1704 1894 237 102 114 chr4 146677329 146678145 -8951975 + RLTR40 LTR ERVK 1 806 -11 2 1704 708 80 0 0 chr4 146678611 146678711 -8951409 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 2 1704 207 100 0 0 chr4 146679536 146679566 -8950554 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 1704 1398 63 11 5 chr4 146680186 146680377 -8949743 - B2_Mm1t SINE B2 0 193 2 2 1704 4286 14 12 2 chr4 146680673 146681161 -8948959 + MT2_Mm LTR ERVL 1 493 0 2 1704 200 35 35 0 chr4 146681288 146681317 -8948803 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2 1704 1102 68 0 39 chr4 146681944 146682098 -8948022 - B1_Mus1 SINE Alu 0 148 1 2 1704 2623 35 35 0 chr4 146682205 146682519 -8947601 - IAPLTR2b LTR ERVK -2 325 1 2 1704 520 332 109 18 chr4 146682970 146683418 -8946702 - Lx8 LINE L1 -519 6954 6466 2 1704 1585 236 55 3 chr4 146683716 146683862 -8946258 - RMER6A LTR ERVK 0 756 608 2 1704 1107 86 0 0 chr4 146683862 146684001 -8946119 - B1_Mus2 SINE Alu -7 140 2 2 1704 1585 236 55 3 chr4 146684001 146684237 -8945883 - RMER6A LTR ERVK -149 607 355 2 1704 204 214 0 0 chr4 146684437 146684479 -8945641 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 2 1704 844 315 73 15 chr4 146686643 146687107 -8943013 - Lx8 LINE L1 -519 6954 6464 2 1704 3235 136 10 4 chr4 146687269 146687777 -8942343 + L1_Mus3 LINE L1 6128 6638 0 2 1704 1935 186 17 89 chr4 146687916 146688125 -8941995 - RMER6A LTR ERVK -1 755 576 2 1704 768 88 173 16 chr4 146688125 146688252 -8941868 - B1_Mus1 SINE Alu 0 148 2 2 1704 1935 226 42 72 chr4 146688252 146688856 -8941264 - RMER6A LTR ERVK -155 601 56 2 1704 252 256 13 0 chr4 146689357 146689435 -8940685 - L1MEg LINE L1 -4700 1384 1306 2 1704 2822 186 39 16 chr4 146690410 146691026 -8939094 - Lx3B LINE L1 -293 6680 6051 2 1704 374 341 88 6 chr4 146691027 146691357 -8938763 + Tigger1 DNA MER2_type 1774 2130 -288 2 1704 602 325 9 24 chr4 146691441 146691652 -8938468 + B3 SINE B2 9 216 0 2 1704 406 286 75 8 chr4 146692639 146692773 -8937347 - RLTR25B LTR ERVK 0 1028 886 2 1704 341 241 63 138 chr4 146692756 146692915 -8937205 - RLTR25B LTR ERVK -256 772 626 2 1704 306 106 0 0 chr4 146693059 146693106 -8937014 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 2 1704 6154 144 64 87 chr4 146693109 146694479 -8935641 - Lx3A LINE L1 -5 6976 5638 2 1704 327 104 0 0 chr4 146694506 146694554 -8935566 + (TATG)n Simple_repeat Simple_repeat 1 48 0 2 1704 471 293 0 10 chr4 146694578 146694678 -8935442 + B3A SINE B2 25 123 -75 2 1704 429 20 0 0 chr4 146694678 146694728 -8935392 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1704 216 0 0 0 chr4 146694927 146694951 -8935169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1704 5525 106 12 29 chr4 146694984 146695516 -8934604 - L1_Mur1 LINE L1 -259 5627 5109 2 1704 1158 75 7 0 chr4 146695516 146695663 -8934457 - B1_Mus1 SINE Alu 0 148 1 2 1704 5525 106 12 29 chr4 146695663 146696057 -8934063 - L1_Mur1 LINE L1 -778 5108 4717 2 1704 353 157 48 0 chr4 146696248 146696331 -8933789 + L1Md_F2 LINE L1 6496 6582 0 2 1704 926 316 22 28 chr4 146697446 146697768 -8932352 - ORR1D2 LTR MaLR -8 362 43 2 1704 253 271 27 135 chr4 146697907 146698018 -8932102 - B1_Mur2 SINE Alu -1 148 21 2 1704 387 0 0 0 chr4 146698038 146698081 -8932039 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1704 1164 66 0 0 chr4 146698662 146698829 -8931291 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 1704 24 53 0 0 chr4 146700395 146700433 -8929687 + AT_rich Low_complexity Low_complexity 1 38 0 2 1704 741 80 9 9 chr4 146701192 146701305 -8928815 - B2_Mm1t SINE B2 -7 186 74 2 1704 400 327 18 25 chr4 146701877 146702040 -8928080 - B3 SINE B2 0 216 55 2 1704 1210 131 22 0 chr4 146702069 146702252 -8927868 + B2_Mm2 SINE B2 2 188 -7 2 1704 696 24 0 0 chr4 146702368 146702450 -8927670 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 2 1704 1056 96 0 33 chr4 146702653 146702804 -8927316 - B1_Mus2 SINE Alu 0 147 2 2 1704 1558 48 5 0 chr4 146702818 146703007 -8927113 - B2_Mm1t SINE B2 -3 190 1 2 1704 2124 199 31 2 chr4 146703902 146704354 -8925766 - Lx2 LINE L1 0 6997 6533 2 1704 5033 86 34 6 chr4 146704379 146705081 -8925039 - L1Md_F2 LINE L1 0 6582 5861 2 1704 477 0 0 0 chr4 146705217 146705270 -8924850 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1704 1334 112 1 1 chr4 146705758 146707292 -8922828 + MMSAT4 Satellite Satellite 1 1534 0 2 1704 364 215 174 0 chr4 146707803 146707924 -8922196 + RMER15 LTR ERVL 432 573 -2 2 1704 367 256 44 11 chr4 146707980 146708071 -8922049 + URR1B DNA MER1_type 3 96 -129 2 1704 1299 99 28 0 chr4 146708490 146708671 -8921449 + B2_Mm1t SINE B2 2 187 -6 2 1704 30 0 0 0 chr4 146710748 146710778 -8919342 + AT_rich Low_complexity Low_complexity 1 30 0 2 1704 6497 106 4 0 chr4 146710782 146712262 -8917858 - L1_Mus1 LINE L1 0 6567 5081 2 1704 428 250 30 0 chr4 146712263 146712363 -8917757 - B3 SINE B2 -113 103 1 2 1704 215 245 79 69 chr4 146712366 146712467 -8917653 + MIR SINE MIR 125 226 -36 2 1704 599 309 25 45 chr4 146712592 146712834 -8917286 - ID_B1 SINE B4 -50 242 7 2 1704 879 233 24 28 chr4 146712867 146713079 -8917041 - B3 SINE B2 -5 211 1 2 1704 216 271 17 17 chr4 146713289 146713462 -8916658 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1704 207 267 0 0 chr4 146713481 146713526 -8916594 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1704 1053 144 22 0 chr4 146713565 146713745 -8916375 + B2_Mm2 SINE B2 3 186 -9 2 1704 257 234 45 30 chr4 146713788 146713854 -8916266 + RSINE1 SINE B4 15 81 -84 3 1704 442 243 230 29 chr4 146713869 146714043 -8916077 + B3 SINE B2 3 211 -5 3 1704 243 0 0 0 chr4 146714105 146714132 -8915988 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1704 275 288 12 36 chr4 146714308 146714414 -8915706 + PB1D10 SINE Alu 13 114 -6 3 1704 932 174 107 5 chr4 146714417 146714613 -8915507 + B3 SINE B2 1 216 0 3 1704 638 211 165 24 chr4 146714744 146714914 -8915206 + B3A SINE B2 1 194 -4 3 1704 3470 30 0 0 chr4 146715264 146715660 -8914460 + MTA_Mm LTR MaLR 1 396 0 3 1704 9491 24 1 2 chr4 146715660 146716759 -8913361 + MTA_Mm-int LTR MaLR 1 1098 0 3 1704 3260 39 21 0 chr4 146716759 146717147 -8912973 + MTA_Mm LTR MaLR 1 396 0 3 1704 280 108 0 58 chr4 146718082 146718151 -8911969 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1704 301 264 50 54 chr4 146718156 146718281 -8911839 - B1F2 SINE Alu -21 127 12 3 1704 2871 66 42 3 chr4 146718793 146719174 -8910946 - MTA_Mm LTR MaLR 0 396 1 3 1704 235 111 286 36 chr4 146719499 146719555 -8910565 + B1_Mur3 SINE Alu 79 148 -1 3 1704 222 267 101 34 chr4 146720126 146720215 -8909905 + PB1D10 SINE Alu 6 100 -20 3 1704 542 194 331 10 chr4 146720289 146720430 -8909690 + B3 SINE B2 1 186 -30 3 1704 231 61 0 0 chr4 146720430 146720463 -8909657 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1704 311 217 14 28 chr4 146720463 146720482 -8909638 + B3 SINE B2 187 205 -11 3 1704 802 156 48 30 chr4 146720709 146720874 -8909246 + URR1B DNA MER1_type 56 223 -2 2 1704 1266 109 5 25 chr4 146721054 146721251 -8908869 + B2_Mm1a SINE B2 1 193 0 3 1704 298 254 28 0 chr4 146721308 146721379 -8908741 + B3A SINE B2 1 73 -125 3 1704 547 269 37 49 chr4 146721473 146721637 -8908483 + RSINE1 SINE B4 4 165 0 3 1704 806 85 178 0 chr4 146721682 146721811 -8908309 + B2_Mm2 SINE B2 2 153 -42 3 1704 462 18 0 0 chr4 146721811 146721866 -8908254 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1704 281 265 28 2 chr4 146722060 146722140 -8907980 + B1_Mur1 SINE Alu 53 133 -16 3 1704 21 0 0 0 chr4 146722438 146722459 -8907661 + AT_rich Low_complexity Low_complexity 1 21 0 3 1704 704 214 69 11 chr4 146722638 146722813 -8907307 - LTRIS2 LTR ERV1 0 564 380 3 1704 580 123 94 0 chr4 146722791 146722897 -8907223 - LTRIS5 LTR ERV1 -331 116 1 3 1704 292 73 0 0 chr4 146722898 146722939 -8907181 - RLTR6-int LTR ERV1 -1 7777 7737 3 1704 611 190 35 0 chr4 146723076 146723192 -8906928 - RMER16-int LTR ERVK -4600 806 687 3 1704 454 132 268 7 chr4 146723180 146723326 -8906794 - RMER16-int LTR ERVK -5082 324 141 3 1704 1262 34 0 0 chr4 146723330 146723477 -8906643 + B1_Mm SINE Alu 1 147 0 3 1704 243 0 0 0 chr4 146723494 146723521 -8906599 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1704 181 133 16 32 chr4 146723535 146723597 -8906523 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 3 1704 706 133 37 44 chr4 146724312 146724474 -8905646 - LTRIS5 LTR ERV1 -50 604 305 3 1704 757 57 85 0 chr4 146724470 146724576 -8905544 - LTRIS5 LTR ERV1 -332 115 1 3 1704 504 284 164 6 chr4 146724596 146724773 -8905347 + B4A SINE B4 82 286 -6 3 1704 1496 58 5 0 chr4 146724988 146725176 -8904944 + B2_Mm1a SINE B2 1 189 -4 3 1704 362 298 133 52 chr4 146725672 146725846 -8904274 - RMER15 LTR ERVL -19 556 356 3 1704 2008 118 9 38 chr4 146725846 146726164 -8903956 + RLTR27 LTR ERVK 1 309 0 3 1704 362 298 133 52 chr4 146726164 146726237 -8903883 - RMER15 LTR ERVL -220 355 289 3 1704 264 329 0 0 chr4 146726237 146726310 -8903810 + MTEa LTR MaLR 27 99 -280 3 1704 688 292 87 32 chr4 146726317 146726536 -8903584 + MT2A LTR ERVL 158 388 -145 3 1704 264 154 0 0 chr4 146727136 146727188 -8902932 + CT-rich Low_complexity Low_complexity 2 53 0 3 1704 294 125 0 0 chr4 146727758 146727806 -8902314 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1704 1173 75 0 0 chr4 146727816 146727963 -8902157 - B1_Mus2 SINE Alu 0 147 1 3 1704 310 141 23 23 chr4 146728873 146728960 -8901160 + L1_Mur2 LINE L1 3678 3764 -2113 3 1704 435 250 18 0 chr4 146728958 146729070 -8901050 - Lx6 LINE L1 -24 7436 7323 3 1704 222 37 0 0 chr4 146729072 146729099 -8901021 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1704 281 313 36 0 chr4 146729414 146729497 -8900623 - RLTR18 LTR ERVK 0 512 427 3 1704 392 303 39 39 chr4 146729679 146729861 -8900259 - RMER21B LTR ERV1 -335 507 326 3 1704 1332 260 24 34 chr4 146729892 146730226 -8899894 - RLTR18 LTR ERVK -105 511 204 3 1704 207 0 0 0 chr4 146730226 146730249 -8899871 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1704 997 102 7 0 chr4 146730249 146730386 -8899734 - B1_Mus1 SINE Alu -9 139 2 3 1704 1332 289 47 49 chr4 146730386 146730591 -8899529 - RLTR18 LTR ERVK -413 203 2 3 1704 296 253 0 62 chr4 146730764 146730844 -8899276 + B1_Mm SINE Alu 26 100 -47 3 1704 438 212 0 0 chr4 146731465 146731564 -8898556 + (TA)n Simple_repeat Simple_repeat 1 99 0 3 1704 1102 312 65 0 chr4 146731592 146732025 -8898095 - Lx6 LINE L1 -826 6634 6174 3 1704 2157 216 68 119 chr4 146732141 146732908 -8897212 + RLTR40 LTR ERVK 1 728 -89 3 1704 618 14 0 0 chr4 146733392 146733463 -8896657 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 3 1704 1040 251 84 127 chr4 146733484 146734086 -8896034 + RLTR1D LTR ERV1 52 611 -13 3 1704 552 89 0 0 chr4 146734086 146734165 -8895955 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 3 1704 1587 32 16 0 chr4 146734975 146735164 -8894956 + B2_Mm1t SINE B2 2 193 0 3 1704 201 132 0 0 chr4 146735180 146735218 -8894902 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 3 1704 928 55 69 23 chr4 146736458 146736589 -8893531 - B1_Mus1 SINE Alu 0 148 12 3 1704 457 200 149 78 chr4 146736464 146736605 -8893515 - B4A SINE B4 -68 224 74 3 1704 345 361 103 11 chr4 146737138 146737586 -8892534 - Lx8 LINE L1 -519 6954 6466 3 1704 1711 222 36 13 chr4 146737887 146738279 -8891841 - RMER6A LTR ERVK -2 754 354 3 1704 220 191 0 0 chr4 146738480 146738522 -8891598 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 3 1704 714 305 91 28 chr4 146740672 146741134 -8888986 - Lx8 LINE L1 -519 6954 6464 3 1704 3325 113 14 6 chr4 146741296 146741803 -8888317 + L1_Mus3 LINE L1 6128 6638 0 3 1704 1677 176 12 102 chr4 146741950 146742160 -8887960 - RMER6A LTR ERVK 0 756 576 3 1704 694 112 173 16 chr4 146742160 146742287 -8887833 - B1_Mus1 SINE Alu 0 148 2 3 1704 1677 176 12 102 chr4 146742287 146742480 -8887640 - RMER6A LTR ERVK -181 575 389 3 1704 2431 102 6 9 chr4 146742700 146743046 -8887074 - IAPLTR4 LTR ERVK 0 345 1 3 1704 224 140 40 0 chr4 146743127 146743177 -8886943 + (TATG)n Simple_repeat Simple_repeat 1 52 0 3 1704 31 0 0 0 chr4 146743635 146743666 -8886454 + AT_rich Low_complexity Low_complexity 1 31 0 3 1704 6502 156 67 11 chr4 146743671 146745174 -8884946 - Lx3B LINE L1 -54 6919 5310 3 1704 3408 25 5 0 chr4 146745174 146745568 -8884552 + MTA_Mm LTR MaLR 1 396 0 3 1704 9563 16 3 0 chr4 146745568 146746663 -8883457 + MTA_Mm-int LTR MaLR 1 1098 0 3 1704 3427 18 8 0 chr4 146746663 146747056 -8883064 + MTA_Mm LTR MaLR 1 396 0 3 1704 6502 142 6 11 chr4 146747056 146747653 -8882467 - Lx3B LINE L1 -577 5309 4717 3 1704 281 338 73 5 chr4 146747785 146747921 -8882199 - B1_Mur3 SINE Alu 0 147 3 3 1704 279 250 0 165 chr4 146747921 146747986 -8882134 - MT2B LTR ERVL -342 259 210 3 1704 1150 265 91 123 chr4 146747942 146748209 -8881911 - RLTR25A LTR ERVK -531 572 334 3 1704 4541 198 40 16 chr4 146748209 146749145 -8880975 - RMER17B LTR ERVK 0 958 1 3 1704 1150 265 91 123 chr4 146749145 146749414 -8880706 - RLTR25A LTR ERVK -770 333 53 3 1704 385 382 24 14 chr4 146749464 146749674 -8880446 - B3 SINE B2 -3 213 2 3 1704 1519 43 11 0 chr4 146749697 146749883 -8880237 - B2_Mm1a SINE B2 -5 188 1 3 1704 1049 82 7 7 chr4 146750408 146750555 -8879565 - B1_Mus2 SINE Alu 0 147 1 3 1704 859 329 38 22 chr4 146751283 146751597 -8878523 - ORR1D2 LTR MaLR -9 361 43 3 1704 209 57 0 28 chr4 146751711 146751747 -8878373 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 3 1704 312 176 0 0 chr4 146753586 146753654 -8876466 + GA-rich Low_complexity Low_complexity 3 70 0 3 1704 229 216 0 0 chr4 146753995 146754046 -8876074 + T-rich Low_complexity Low_complexity 4 54 0 3 1704 369 0 0 0 chr4 146755502 146755543 -8874577 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1704 389 304 113 0 chr4 146755764 146755958 -8874162 - B3 SINE B2 0 216 1 3 1704 4749 87 25 49 chr4 146756759 146757529 -8872591 - RMER17A LTR ERVK 0 751 1 3 1704 1136 75 0 7 chr4 146757619 146757766 -8872354 + B1_Mus1 SINE Alu 1 146 -2 3 1704 27 0 0 0 chr4 146759579 146759606 -8870514 + AT_rich Low_complexity Low_complexity 1 27 0 3 1704 314 335 31 37 chr4 146761608 146761769 -8868351 - B3 SINE B2 0 216 57 3 1704 393 98 321 9 chr4 146761845 146761957 -8868163 - B2_Mm2 SINE B2 -2 193 47 3 1704 946 149 68 0 chr4 146761989 146762150 -8867970 - B2_Mm2 SINE B2 -22 173 2 3 1704 1601 36 0 10 chr4 146762894 146763088 -8867032 + B2_Mm1t SINE B2 2 193 0 3 1704 3494 175 16 29 chr4 146763436 146764119 -8866001 - Lx2 LINE L1 -6 6991 6318 3 1704 1231 148 9 7 chr4 146764694 146766565 -8863555 + MMSAT4 Satellite Satellite 1 1875 0 3 1704 317 351 57 72 chr4 146767010 146767289 -8862831 + RMER15 LTR ERVL 218 492 -83 3 1704 180 133 16 32 chr4 146767583 146767645 -8862475 + A-rich Low_complexity Low_complexity 2 62 0 3 1704 549 0 0 0 chr4 146767694 146767755 -8862365 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1704 4117 196 13 22 chr4 146770103 146771313 -8858807 - Lx2B LINE L1 -402 6598 5405 3 1704 488 229 7 7 chr4 146771309 146771450 -8858670 + L1_Mur1 LINE L1 3312 3452 -2434 3 1704 423 0 0 0 chr4 146771762 146771809 -8858311 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1704 273 349 19 39 chr4 146772101 146772256 -8857864 - MLT1B LTR MaLR -122 268 117 3 1704 4907 133 38 5 chr4 146772436 146773219 -8856901 + RMER17D2 LTR ERVK 1 809 0 3 1704 207 0 0 0 chr4 146773553 146773576 -8856544 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1704 279 0 0 0 chr4 146774028 146774059 -8856061 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1704 273 196 0 0 chr4 146774489 146774545 -8855575 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1704 1214 315 29 39 chr4 146774689 146775551 -8854569 - RLTR10-int LTR ERVK -4163 2379 1527 3 1704 1841 47 0 48 chr4 146775722 146776101 -8854019 - RLTR10-int LTR ERVK -1259 728 302 3 1704 2102 88 109 17 chr4 146776101 146776458 -8853662 - RLTR10 LTR ERVK 0 390 1 3 1704 1210 83 0 0 chr4 146776469 146776626 -8853494 + B2_Mm2 SINE B2 5 161 -34 4 1704 327 49 0 0 chr4 146776626 146776667 -8853453 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1704 2065 216 21 59 chr4 146776672 146777247 -8852873 + Lx7 LINE L1 6979 7531 -165 4 1704 492 128 0 0 chr4 146777251 146777329 -8852791 + (CAATA)n Simple_repeat Simple_repeat 2 79 0 4 1704 549 211 72 7 chr4 146777329 146777482 -8852638 + Lx6 LINE L1 7294 7456 -4 4 1704 1146 239 120 9 chr4 146777490 146777824 -8852296 + MTD LTR MaLR 1 371 -48 4 1704 453 113 34 17 chr4 146777854 146777971 -8852149 + (TCTG)n Simple_repeat Simple_repeat 2 120 0 4 1704 728 204 14 7 chr4 146778478 146778621 -8851499 + B1_Mur3 SINE Alu 1 144 -5 4 1704 366 261 8 102 chr4 146778638 146778766 -8851354 + RMER5 LTR ERV1 14 129 -405 4 1704 441 66 16 0 chr4 146778771 146778832 -8851288 - RLTR11B LTR ERVK -389 64 3 4 1704 1521 132 4 0 chr4 146778834 146779068 -8851052 + RMER1B Other Other 487 721 -345 4 1704 190 0 67 0 chr4 146779099 146779129 -8850991 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1704 553 133 48 0 chr4 146779133 146779238 -8850882 + RMER1B Other Other 957 1066 0 4 1704 24 53 0 0 chr4 146779291 146779329 -8850791 + AT_rich Low_complexity Low_complexity 1 38 0 4 1704 405 0 0 0 chr4 146779463 146779508 -8850612 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1704 1302 116 5 0 chr4 146779725 146779914 -8850206 - B2_Mm1a SINE B2 -1 192 3 4 1704 216 122 0 0 chr4 146780021 146780062 -8850058 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1704 198 156 0 0 chr4 146780181 146780226 -8849894 + T-rich Low_complexity Low_complexity 1 45 0 4 1704 21 0 0 0 chr4 146780431 146780452 -8849668 + AT_rich Low_complexity Low_complexity 1 21 0 4 1704 213 132 0 0 chr4 146780790 146780828 -8849292 + (C)n Simple_repeat Simple_repeat 1 38 0 4 1704 21 57 0 0 chr4 146781358 146781393 -8848727 + GC_rich Low_complexity Low_complexity 1 35 0 4 1704 5645 100 6 7 chr4 146782623 146783529 -8846591 + L1VL4 LINE L1 195 1092 -2467 4 1704 210 37 0 0 chr4 146783529 146783556 -8846564 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1704 5645 92 8 24 chr4 146783556 146784269 -8845851 + L1VL4 LINE L1 1093 1803 -1756 4 1704 6607 136 32 19 chr4 146784277 146785880 -8844240 + Lx2 LINE L1 5263 6999 -1 4 1704 1278 139 243 26 chr4 146787156 146787589 -8842531 + RMER5 LTR ERV1 1 527 -7 4 1704 969 125 0 0 chr4 146787960 146788112 -8842008 + (TTTC)n Simple_repeat Simple_repeat 3 154 0 4 1704 533 15 15 0 chr4 146788115 146788181 -8841939 + (TTCTC)n Simple_repeat Simple_repeat 4 70 0 4 1704 1062 82 0 0 chr4 146788189 146788324 -8841796 - B1_Mus1 SINE Alu -9 139 5 4 1704 375 23 0 0 chr4 146788335 146788379 -8841741 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 4 1704 1321 45 17 0 chr4 146788379 146788555 -8841565 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1704 488 248 64 111 chr4 146788581 146788753 -8841367 - RSINE1 SINE B4 0 165 2 4 1704 35 0 0 0 chr4 146788756 146788791 -8841329 + AT_rich Low_complexity Low_complexity 1 35 0 4 1704 267 31 0 0 chr4 146788792 146788824 -8841296 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1704 1481 32 0 11 chr4 146788932 146789167 -8840953 - L1Md_F3 LINE L1 0 6584 6371 4 1704 5703 41 2 0 chr4 146789169 146790209 -8839911 + L1Md_F3 LINE L1 5266 6307 -275 4 1704 216 171 0 0 chr4 146791828 146791869 -8838251 + G-rich Low_complexity Low_complexity 1 41 0 4 1704 636 14 0 0 chr4 146791876 146791949 -8838171 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1704 4145 46 22 8 chr4 146792897 146793402 -8836718 + LTRIS3 LTR ERV1 1 512 0 4 1704 316 0 22 22 chr4 146793661 146793706 -8836414 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 1704 330 289 13 0 chr4 146793892 146793968 -8836152 + ID4 SINE ID 2 78 -5 4 1704 703 220 57 0 chr4 146794027 146794168 -8835952 - B1_Mur1 SINE Alu 0 149 1 4 1704 668 274 39 82 chr4 146794168 146794258 -8835862 - ID_B1 SINE B4 -2 222 2 4 1704 329 362 19 0 chr4 146794617 146794722 -8835398 + MER58B DNA MER1_type 229 335 -6 4 1704 224 326 92 0 chr4 146794767 146794865 -8835255 - L2a LINE L2 -31 3395 3289 4 1704 227 237 0 17 chr4 146796042 146796102 -8834018 - MER46C DNA MER2_type 0 338 280 4 1704 237 333 8 67 chr4 146796648 146796767 -8833353 + MER5B DNA MER1_type 60 171 -7 4 1704 242 160 20 0 chr4 146797034 146797084 -8833036 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1704 629 36 24 0 chr4 146797665 146797748 -8832372 + (TATG)n Simple_repeat Simple_repeat 4 88 0 4 1704 741 366 29 14 chr4 146797790 146798070 -8832050 - B4A SINE B4 -8 284 1 4 1704 670 286 7 0 chr4 146798118 146798258 -8831862 - RSINE1 SINE B4 -22 143 3 4 1704 319 289 0 46 chr4 146798580 146798667 -8831453 - B1F SINE Alu -66 83 1 4 1704 416 307 158 94 chr4 146798868 146799325 -8830795 - L2 LINE L2 -1461 1958 1473 4 1704 288 0 0 0 chr4 146799365 146799397 -8830723 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 4 1704 207 0 0 0 chr4 146799496 146799519 -8830601 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1704 226 330 169 25 chr4 146799544 146799899 -8830221 - L2 LINE L2 -2038 1381 976 4 1704 210 147 0 0 chr4 146800376 146800410 -8829710 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1705 399 339 0 8 chr4 146801023 146801148 -8828972 - RSINE1 SINE B4 -31 134 11 4 1705 330 78 78 0 chr4 146801246 146801323 -8828797 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 4 1705 880 233 42 9 chr4 146801326 146801538 -8828582 + MTEb LTR MaLR 161 379 0 4 1705 3739 57 2 2 chr4 146802075 146802886 -8827234 - L1VL2 LINE L1 -2158 1457 647 4 1705 342 321 9 0 chr4 146803843 146803952 -8826168 + Lx9 LINE L1 7078 7187 -457 4 1705 1095 190 65 14 chr4 146803962 146804176 -8825944 + URR1B DNA MER1_type 1 225 0 4 1705 235 281 101 30 chr4 146804353 146804452 -8825668 + PB1D10 SINE Alu 7 112 -5 4 1705 25 31 0 0 chr4 146804471 146804503 -8825617 + AT_rich Low_complexity Low_complexity 1 32 0 4 1705 2020 263 56 19 chr4 146804552 146805068 -8825052 - RMER15 LTR ERVL -18 557 23 4 1705 21 0 0 0 chr4 146806942 146806963 -8823157 + AT_rich Low_complexity Low_complexity 1 21 0 4 1705 722 239 22 0 chr4 146807192 146807326 -8822794 - RSINE1 SINE B4 -25 140 4 4 1705 522 285 150 0 chr4 146807329 146807522 -8822598 - ID_B1 SINE B4 0 224 3 4 1705 379 310 97 71 chr4 146808090 146808430 -8821690 - RMER17C LTR ERVK -61 349 1 4 1705 33 25 0 0 chr4 146808628 146808668 -8821452 + AT_rich Low_complexity Low_complexity 1 40 0 4 1705 1000 83 0 0 chr4 146808672 146808805 -8821315 + B1_Mus1 SINE Alu 15 147 -1 4 1705 602 304 23 18 chr4 146808805 146808976 -8821144 - B3A SINE B2 0 198 27 4 1705 259 360 98 33 chr4 146808949 146809133 -8820987 - RLTR25A LTR ERVK -386 717 522 4 1705 395 255 10 78 chr4 146809083 146809185 -8820935 - B1_Mus2 SINE Alu -52 95 1 4 1705 328 262 93 93 chr4 146809185 146809201 -8820919 - B4 SINE B4 -106 186 69 4 1705 183 100 0 0 chr4 146809503 146809533 -8820587 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1705 1174 84 0 14 chr4 146809654 146809945 -8820175 + (GAAA)n Simple_repeat Simple_repeat 1 287 0 4 1705 230 204 0 0 chr4 146809998 146810047 -8820073 - RLTR19C LTR ERVK -418 88 40 4 1705 229 170 36 36 chr4 146810029 146810084 -8820036 - MER46C DNA MER2_type -199 139 85 4 1705 213 121 0 0 chr4 146810300 146810333 -8819787 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4 1705 7757 116 13 7 chr4 146810355 146812396 -8817724 - Lx3_Mus LINE L1 -69 6940 4679 4 1705 9892 96 5 46 chr4 146812396 146813824 -8816296 + L1_Mur1 LINE L1 3073 4458 -1428 4 1705 1098 67 18 6 chr4 146813824 146813989 -8816131 + L1_Mus3 LINE L1 6469 6635 -3 4 1705 9892 96 5 46 chr4 146813989 146814231 -8815889 + L1_Mur1 LINE L1 4459 4675 -1211 4 1705 289 252 17 25 chr4 146814291 146814409 -8815711 - L1_Rod LINE L1 -36 5811 5695 4 1705 1359 190 15 0 chr4 146814420 146814689 -8815431 - Lx3B LINE L1 -525 6448 6176 4 1705 4077 134 28 0 chr4 146814681 146815411 -8814709 - Lx4A LINE L1 -750 6308 5554 4 1705 261 0 0 0 chr4 146815411 146815440 -8814680 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1705 2436 138 51 2 chr4 146815440 146815576 -8814544 - Lx4A LINE L1 -324 5553 5406 4 1705 2567 172 10 0 chr4 146815583 146816088 -8814032 + L1_Mur2 LINE L1 4815 5324 -553 4 1705 489 300 43 25 chr4 146816102 146816307 -8813813 - RMER1A Other Other -845 185 19 4 1705 1225 108 27 0 chr4 146816307 146816492 -8813628 - BGLII LTR ERVK -231 190 1 4 1705 1398 209 83 34 chr4 146816492 146816965 -8813155 - MYSERV16_I-int LTR ERVK 0 2326 1816 4 1705 488 63 13 0 chr4 146816965 146817044 -8813076 - L1Md_F2 LINE L1 -2 6580 6501 4 1705 1398 209 83 34 chr4 146817044 146817074 -8813046 - MYSERV16_I-int LTR ERVK -511 1815 1798 4 1705 248 70 23 0 chr4 146818213 146818256 -8811864 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1705 1100 89 0 0 chr4 146818262 146818408 -8811712 - B1_Mm SINE Alu 0 147 2 4 1705 204 152 22 0 chr4 146818829 146818875 -8811245 + T-rich Low_complexity Low_complexity 3 49 0 4 1705 1165 62 7 0 chr4 146818876 146819022 -8811098 - B1_Mm SINE Alu 0 147 1 4 1705 773 312 69 35 chr4 146819033 146819381 -8810739 - RLTR18 LTR ERVK -256 360 1 4 1705 279 250 0 73 chr4 146819555 146819637 -8810483 + B1_Mm SINE Alu 26 101 -46 4 1705 1107 305 72 5 chr4 146820285 146820717 -8809403 - Lx6 LINE L1 -826 6634 6174 4 1705 2326 230 83 69 chr4 146820850 146821645 -8808475 + RLTR40 LTR ERVK 1 806 -11 4 1705 1057 123 6 6 chr4 146822085 146822265 -8807855 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1705 249 119 0 0 chr4 146823087 146823129 -8806991 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 4 1705 2186 151 105 124 chr4 146824048 146824621 -8805499 - LTRIS2 LTR ERV1 0 564 3 4 1705 429 340 58 22 chr4 146826213 146826487 -8803633 - Lx8 LINE L1 -713 6760 6477 4 1705 2681 220 22 109 chr4 146826791 146827558 -8802562 - RMER6A LTR ERVK 0 756 57 4 1705 183 42 0 0 chr4 146827984 146828008 -8802112 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1705 1066 117 0 0 chr4 146828027 146828172 -8801948 - B1_Mus1 SINE Alu -3 145 1 5 1705 768 93 155 0 chr4 146829529 146829658 -8800462 - B2_Mm2 SINE B2 0 195 47 5 1705 216 200 0 0 chr4 146830457 146830507 -8799613 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 5 1705 273 57 0 0 chr4 146831128 146831163 -8798957 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1705 3878 158 54 28 chr4 146831539 146832334 -8797786 - Lx2 LINE L1 -388 6609 5794 5 1705 1226 305 65 2 chr4 146832674 146833108 -8797012 - Lx6 LINE L1 -826 6634 6174 5 1705 271 188 71 14 chr4 146833231 146833301 -8796819 + RLTR40 LTR ERVK 1 74 -743 5 1705 1220 221 28 121 chr4 146833295 146833692 -8796428 + RLTR40 LTR ERVK 447 806 -11 5 1705 324 211 0 0 chr4 146834136 146834212 -8795908 + T-rich Low_complexity Low_complexity 1 76 0 5 1705 233 224 26 0 chr4 146834302 146834378 -8795742 - L1_Mur3 LINE L1 -4451 1429 1352 5 1705 206 250 0 0 chr4 146834391 146834443 -8795677 + T-rich Low_complexity Low_complexity 1 52 0 5 1705 189 0 0 0 chr4 146835539 146835560 -8794560 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1705 266 47 0 44 chr4 146837896 146837941 -8792179 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1705 1116 77 7 0 chr4 146837941 146838084 -8792036 - B1_Mm SINE Alu -3 144 1 5 1705 327 331 84 16 chr4 146838085 146838334 -8791786 - Lx8 LINE L1 -739 6734 6469 5 1705 5099 168 19 6 chr4 146838591 146839541 -8790579 - Lx3C LINE L1 -360 6206 5201 5 1705 180 0 0 0 chr4 146839541 146839561 -8790559 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1705 5099 165 7 2 chr4 146839561 146839829 -8790291 - Lx3C LINE L1 -686 5200 4929 5 1705 1785 98 76 21 chr4 146839845 146840136 -8789984 - IAPLTR2b LTR ERVK -20 307 1 5 1705 6645 107 14 18 chr4 146840136 146841245 -8788875 - IAPEz-int LTR ERVK -351 7329 5527 5 1705 39499 57 14 11 chr4 146841759 146847069 -8783051 - IAPEz-int LTR ERVK -966 5515 1 5 1705 2056 77 30 20 chr4 146847086 146847390 -8782730 - IAPLTR2b LTR ERVK -20 307 1 5 1705 2422 140 45 0 chr4 146847390 146847833 -8782287 - L1_Mur1 LINE L1 -952 4934 4472 5 1705 298 336 67 0 chr4 146848001 146848105 -8782015 - B1_Mur3 SINE Alu -36 113 3 5 1705 694 254 17 134 chr4 146848105 146848397 -8781723 - RLTR25B LTR ERVK -546 557 329 5 1705 4358 211 55 7 chr4 146848401 146849309 -8780811 - RMER17B LTR ERVK -6 952 1 5 1705 979 234 6 127 chr4 146849340 146849654 -8780466 - RLTR25B LTR ERVK -697 331 56 5 1705 275 211 0 0 chr4 146849862 146849914 -8780206 - B3A SINE B2 -145 53 2 5 1705 753 317 120 9 chr4 146851043 146851368 -8778752 - ORR1D2 LTR MaLR -3 367 7 5 1705 1165 126 22 0 chr4 146851399 146851581 -8778539 - B2_Mm1t SINE B2 -6 187 2 5 1705 509 288 0 14 chr4 146851652 146851800 -8778320 - B1_Mur2 SINE Alu -3 146 1 5 1705 273 306 0 56 chr4 146852521 146852611 -8777509 + ID_B1 SINE B4 82 166 -58 5 1705 261 274 40 40 chr4 146852543 146852619 -8777501 + PB1D7 SINE Alu 18 93 -27 5 1705 334 370 28 0 chr4 146852901 146853009 -8777111 - B3 SINE B2 -85 131 21 5 1705 3393 162 26 8 chr4 146853271 146853882 -8776238 - Lx LINE L1 -8 6646 6025 5 1705 484 271 7 41 chr4 146854053 146854199 -8775921 - B1_Mur1 SINE Alu 0 149 9 5 1705 301 325 0 0 chr4 146854504 146854581 -8775539 + B3 SINE B2 7 83 -133 5 1705 911 144 0 18 chr4 146854972 146855142 -8774978 - L1Md_A LINE L1 0 6582 6416 5 1705 259 175 15 31 chr4 146856508 146856573 -8773547 + (CAAA)n Simple_repeat Simple_repeat 3 66 0 5 1705 3563 115 35 12 chr4 146858167 146858397 -8771723 - RMER17B LTR ERVK -366 592 357 5 1705 216 0 0 0 chr4 146858397 146858421 -8771699 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1705 3563 115 35 12 chr4 146858421 146858769 -8771351 - RMER17B LTR ERVK -602 356 2 5 1705 234 171 91 13 chr4 146858890 146858967 -8771153 + L1_Mur2 LINE L1 3662 3744 -2133 5 1705 394 268 18 0 chr4 146858973 146859085 -8771035 - Lx6 LINE L1 -24 7436 7323 5 1705 282 29 0 0 chr4 146859087 146859122 -8770998 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1705 256 337 36 0 chr4 146859434 146859517 -8770603 - RLTR18B LTR ERVK 0 512 427 5 1705 3556 71 96 19 chr4 146859639 146860159 -8769961 - LTRIS2 LTR ERV1 0 564 5 5 1705 879 228 33 0 chr4 146860159 146860389 -8769731 - RLTR1B-int LTR ERV1 -37 5026 4789 5 1705 11345 96 55 16 chr4 146860474 146862325 -8767795 - RLTR1B-int LTR ERV1 -917 4146 1172 5 1705 621 0 0 0 chr4 146862325 146862394 -8767726 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1705 207 0 0 0 chr4 146862394 146862416 -8767704 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1705 11345 246 43 20 chr4 146862416 146863052 -8767068 - RLTR1B-int LTR ERV1 -3402 1661 1013 5 1705 287 148 0 32 chr4 146863100 146863163 -8766957 - RLTR1B-int LTR ERV1 -4243 820 760 5 1705 3808 145 22 9 chr4 146863154 146863875 -8766245 - RMER16-int LTR ERVK -5328 2078 690 5 1705 844 150 80 11 chr4 146863861 146864036 -8766084 - RMER16-int LTR ERVK -5075 331 145 5 1705 670 96 0 2 chr4 146864376 146864485 -8765635 - RLTR1B-int LTR ERV1 -3006 293 139 5 1705 4038 61 36 25 chr4 146864696 146865250 -8764870 - LTRIS2 LTR ERV1 0 564 5 5 1705 425 311 27 33 chr4 146865318 146865501 -8764619 - RMER21B LTR ERV1 -335 507 326 5 1705 213 39 0 0 chr4 146866315 146866341 -8763779 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1705 180 0 0 0 chr4 146867980 146868000 -8762120 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1705 1211 28 21 0 chr4 146868009 146868154 -8761966 - B1_Mus1 SINE Alu 0 148 1 5 1705 498 339 99 25 chr4 146868703 146869148 -8760972 - Lx8 LINE L1 -519 6954 6477 5 1705 1080 228 4 13 chr4 146869457 146869693 -8760427 - RMER6A LTR ERVK 0 756 523 5 1705 4179 110 4 3 chr4 146870882 146871558 -8758562 - L1_Mur1 LINE L1 -493 5393 4717 5 1705 235 250 29 14 chr4 146872711 146872780 -8757340 - Lx8 LINE L1 -764 6709 6640 5 1705 577 324 38 0 chr4 146872794 146873007 -8757113 - ORR1D2 LTR MaLR -3 367 147 5 1705 1129 51 15 0 chr4 146873007 146873144 -8756976 + B1_Mus1 SINE Alu 2 140 -8 5 1705 441 0 0 0 chr4 146873148 146873197 -8756923 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 1705 367 333 57 84 chr4 146873197 146873357 -8756763 - ORR1D2 LTR MaLR -222 156 7 5 1705 1209 43 18 0 chr4 146873609 146873773 -8756347 + (TTTTC)n Simple_repeat Simple_repeat 3 169 0 5 1705 495 0 0 0 chr4 146874128 146874183 -8755937 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 1705 33959 71 4 1 chr4 146874223 146880318 -8749802 - L1Md_F2 LINE L1 -11 6571 453 5 1705 6822 55 6 3 chr4 146880318 146881171 -8748949 - RLTR13A LTR ERVK 0 855 1 5 1705 5934 114 29 8 chr4 146881171 146881345 -8748775 - L1Md_F2 LINE L1 -6164 452 279 5 1705 1294 106 21 0 chr4 146882031 146882219 -8747901 - B2_Mm1t SINE B2 0 193 2 5 1705 366 358 13 19 chr4 146884142 146884296 -8745824 - B3 SINE B2 -4 212 60 5 1705 1095 100 19 16 chr4 146884626 146884798 -8745322 - B2_Mm1t SINE B2 -8 185 20 5 1705 1993 219 20 11 chr4 146885675 146886128 -8743992 - Lx2 LINE L1 0 6997 6541 5 1705 480 146 0 0 chr4 146886128 146886217 -8743903 - Lx2 LINE L1 -578 6419 6331 5 1705 1276 120 3 0 chr4 146886595 146889214 -8740906 + MMSAT4 Satellite Satellite 1 2625 0 5 1705 411 21 0 0 chr4 146889528 146889576 -8740544 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 5 1705 846 113 90 0 chr4 146889586 146889719 -8740401 - B1_Mm SINE Alu -2 145 1 5 1705 555 337 87 19 chr4 146889946 146890258 -8739862 + RMER15 LTR ERVL 241 573 -2 5 1705 370 264 43 11 chr4 146890312 146890404 -8739716 + URR1B DNA MER1_type 2 96 -129 5 1705 930 128 0 0 chr4 146891311 146891444 -8738676 + B1_Mus1 SINE Alu 4 136 -12 5 1705 301 0 22 43 chr4 146891445 146891491 -8738629 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 1705 372 82 0 0 chr4 146893288 146893337 -8736783 + B1_Mus1 SINE Alu 1 49 -99 5 1705 1511 305 60 49 chr4 146893337 146894069 -8736051 - Lx6 LINE L1 -931 6529 5790 5 1705 468 0 0 0 chr4 146894072 146894124 -8735996 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 5 1705 545 144 0 8 chr4 146895288 146895421 -8734699 + CT-rich Low_complexity Low_complexity 1 132 0 5 1705 234 116 0 0 chr4 146895422 146895465 -8734655 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1705 1036 83 7 20 chr4 146895467 146895615 -8734505 - B1_Mus1 SINE Alu 0 148 3 5 1705 255 330 29 87 chr4 146896562 146896768 -8733352 - RMER21B LTR ERV1 -324 518 325 5 1705 894 328 55 33 chr4 146896821 146897240 -8732880 - RLTR18 LTR ERVK -88 528 101 5 1705 859 112 8 0 chr4 146897287 146897412 -8732708 + B2_Mm1t SINE B2 42 167 -26 5 1705 378 85 368 19 chr4 146897448 146897554 -8732566 + B2_Mm2 SINE B2 48 190 -5 5 1705 290 245 5 69 chr4 146897573 146897669 -8732451 + B1_Mm SINE Alu 26 120 -29 5 1705 1413 65 5 0 chr4 146897711 146897897 -8732223 - LTRIS4 LTR ERV1 -320 187 1 5 1705 837 213 66 5 chr4 146897899 146898097 -8732023 + RLTR40 LTR ERVK 565 774 -43 5 1705 224 170 0 19 chr4 146898571 146898625 -8731495 + T-rich Low_complexity Low_complexity 3 55 0 5 1705 725 115 27 0 chr4 146898802 146898932 -8731188 - B1_Mus1 SINE Alu 0 148 2 5 1705 367 222 171 75 chr4 146898803 146898949 -8731171 - B4 SINE B4 -67 225 66 5 1705 404 254 27 127 chr4 146901083 146901233 -8728887 + B3 SINE B2 58 192 -3 5 1705 1108 85 0 0 chr4 146901554 146901695 -8728425 - B1_Mus2 SINE Alu -6 141 1 5 1705 6381 206 149 36 chr4 146902563 146903966 -8726154 - L1_Mur2 LINE L1 -662 5215 3823 5 1705 2662 205 20 33 chr4 146903966 146904575 -8725545 + MT2B LTR ERVL 1 601 0 5 1705 6381 206 149 36 chr4 146904575 146904589 -8725531 - L1_Mur2 LINE L1 -2055 3822 3814 5 1705 793 148 53 59 chr4 146904589 146904776 -8725344 - B2_Mm2 SINE B2 -8 187 2 5 1705 6381 206 149 36 chr4 146904776 146905236 -8724884 - L1_Mur2 LINE L1 -2064 3813 3124 5 1705 571 280 11 11 chr4 146905266 146905443 -8724677 - Lx2B LINE L1 -2 6998 6822 5 1705 2218 181 16 18 chr4 146905560 146905999 -8724121 - BGLII_B LTR ERVK 0 441 4 5 1705 5724 243 88 51 chr4 146906068 146909580 -8720540 - MYSERV6-int LTR ERVK -1924 4626 8 5 1705 22 35 0 0 chr4 146909580 146909609 -8720511 + AT_rich Low_complexity Low_complexity 1 29 0 5 1705 810 167 14 14 chr4 146909610 146909756 -8720364 - B1_Mus1 SINE Alu -1 147 2 5 1705 256 204 56 0 chr4 146909756 146909810 -8720310 - MYSERV6-int LTR ERVK -5835 3124 3068 5 1705 1923 125 14 70 chr4 146909810 146910204 -8719916 - BGLII_B LTR ERVK -125 316 1 5 1705 5108 189 43 35 chr4 146910610 146911715 -8718405 - RLTR13D3 LTR ERVK 0 1114 1 5 1705 200 128 26 0 chr4 146912794 146912833 -8717287 + (TAA)n Simple_repeat Simple_repeat 3 42 0 6 1705 350 227 10 111 chr4 146913149 146913168 -8716952 + MT2B LTR ERVL 149 157 -444 6 1705 558 141 11 21 chr4 146913168 146913262 -8716858 + B1_Mus1 SINE Alu 1 93 -55 6 1705 1101 154 16 0 chr4 146913473 146913655 -8716465 + B2_Mm2 SINE B2 3 187 -8 6 1705 1352 87 5 0 chr4 146913665 146913850 -8716270 + B2_Mm1t SINE B2 1 186 -7 6 1705 1367 62 6 0 chr4 146914241 146914418 -8715702 - B2_Mm1t SINE B2 -14 179 2 6 1705 333 141 23 23 chr4 146916062 146916149 -8713971 + L1_Mur2 LINE L1 3678 3764 -2113 6 1705 576 231 40 7 chr4 146916144 146916292 -8713828 - Lx7 LINE L1 -6 7690 7538 6 1705 245 361 36 0 chr4 146916605 146916688 -8713432 - RLTR18 LTR ERVK 0 512 427 6 1705 339 309 39 39 chr4 146916870 146917052 -8713068 - RMER21B LTR ERV1 -335 507 326 6 1705 1327 275 48 25 chr4 146917087 146917612 -8712508 - RLTR18 LTR ERVK -105 511 1 6 1705 309 248 3 59 chr4 146917784 146917876 -8712244 + B1_Mm SINE Alu 26 116 -33 6 1705 380 328 8 25 chr4 146918439 146918561 -8711559 + RMER12 LTR ERVK 736 855 -467 6 1705 390 91 0 0 chr4 146918563 146918618 -8711502 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1705 441 0 0 0 chr4 146918617 146918666 -8711454 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1705 2801 16 3 0 chr4 146918666 146918987 -8711133 + RLTRETN_Mm LTR ERVK 1 322 0 6 1705 40898 28 5 5 chr4 146918987 146923827 -8706293 + MMETn-int LTR ERVK 1 4844 0 6 1705 2766 16 3 0 chr4 146923827 146924147 -8705973 + RLTRETN_Mm LTR ERVK 1 321 -1 6 1705 324 70 0 0 chr4 146924147 146924190 -8705930 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1705 1249 304 68 2 chr4 146924210 146924648 -8705472 - Lx6 LINE L1 -820 6640 6174 6 1705 1839 236 90 135 chr4 146924770 146924931 -8705189 + RLTR40 LTR ERVK 1 149 -668 6 1705 1159 36 0 0 chr4 146924931 146925068 -8705052 - B1_Mus2 SINE Alu -9 138 2 6 1705 1839 236 90 135 chr4 146925068 146925750 -8704370 + RLTR40 LTR ERVK 150 806 -11 6 1705 261 0 0 0 chr4 146925783 146925812 -8704308 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1705 735 100 0 0 chr4 146926241 146926351 -8703769 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 6 1705 230 237 26 0 chr4 146926436 146926512 -8703608 - L1_Mur3 LINE L1 -4451 1429 1352 6 1705 180 97 0 0 chr4 146927142 146927173 -8702947 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 6 1705 294 95 0 0 chr4 146927174 146927216 -8702904 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 6 1705 212 86 29 0 chr4 146928268 146928303 -8701817 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1705 1148 56 0 14 chr4 146928941 146929087 -8701033 - B1_Mus1 SINE Alu 0 148 5 6 1705 716 350 83 9 chr4 146929637 146930092 -8700028 - Lx8 LINE L1 -519 6954 6466 6 1705 1598 231 35 28 chr4 146930391 146930791 -8699329 - RMER6A LTR ERVK 0 756 354 6 1706 873 332 71 13 chr4 146933175 146933639 -8696481 - Lx8 LINE L1 -519 6954 6464 6 1706 3172 128 16 6 chr4 146933801 146934305 -8695815 + L1_Mus3 LINE L1 6128 6636 -2 6 1706 1983 182 12 90 chr4 146934439 146934649 -8695471 - RMER6A LTR ERVK 0 756 578 6 1706 790 87 164 16 chr4 146934649 146934777 -8695343 - B1_Mus1 SINE Alu 0 148 2 6 1706 1983 230 39 88 chr4 146934777 146935398 -8694722 - RMER6A LTR ERVK -155 601 55 6 1706 269 256 13 0 chr4 146935897 146935975 -8694145 - L1MEg LINE L1 -4700 1384 1306 6 1706 197 167 0 40 chr4 146938810 146938860 -8691260 + (TATG)n Simple_repeat Simple_repeat 1 48 0 6 1706 21 36 0 0 chr4 146939318 146939346 -8690774 + AT_rich Low_complexity Low_complexity 1 28 0 6 1706 6751 162 19 7 chr4 146939353 146941388 -8688732 - Lx3B LINE L1 -54 6919 4857 6 1706 238 0 81 0 chr4 146941589 146941626 -8688494 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1706 1356 19 0 0 chr4 146941626 146941786 -8688334 - B2_Mm1t SINE B2 -33 160 1 6 1706 2984 32 0 0 chr4 146941999 146942345 -8687775 + ORR1A0 LTR MaLR 1 346 0 6 1706 28 48 0 0 chr4 146942356 146942398 -8687722 + AT_rich Low_complexity Low_complexity 1 42 0 6 1706 317 320 72 17 chr4 146942641 146942822 -8687298 + Tigger1 DNA MER2_type 1940 2130 -288 6 1706 668 300 5 37 chr4 146942903 146943121 -8686999 + B3 SINE B2 6 216 0 6 1706 435 247 78 89 chr4 146944096 146944389 -8685731 - RLTR25A LTR ERVK 0 1028 683 6 1706 243 103 0 0 chr4 146944491 146944530 -8685590 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 6 1706 4185 148 20 106 chr4 146944533 146945193 -8684927 - Lx3A LINE L1 -6 6975 6386 6 1706 1184 55 0 0 chr4 146945193 146945339 -8684781 - B1_Mm SINE Alu 0 147 2 6 1706 4185 148 20 106 chr4 146945339 146945555 -8684565 - Lx3A LINE L1 -596 6385 6174 6 1706 5768 101 14 12 chr4 146945555 146946437 -8683683 - RLTR13A3 LTR ERVK 0 978 96 6 1706 7270 110 92 14 chr4 146946438 146947273 -8682847 - Lx3A LINE L1 -811 6170 5262 6 1706 1537 52 5 0 chr4 146947273 146947465 -8682655 - B2_Mm1t SINE B2 0 193 1 6 1706 7270 112 17 30 chr4 146947465 146947637 -8682483 - Lx3A LINE L1 -625 5261 5109 6 1706 282 29 0 0 chr4 146947637 146947672 -8682448 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1706 1155 62 7 0 chr4 146947672 146947817 -8682303 - B1_Mus1 SINE Alu -2 146 1 6 1706 7270 112 17 30 chr4 146947817 146948212 -8681908 - Lx3A LINE L1 -778 5108 4718 6 1706 2333 81 15 9 chr4 146948438 146948763 -8681357 + L1Md_F2 LINE L1 6256 6582 0 6 1706 244 265 29 14 chr4 146949789 146949858 -8680262 - Lx8 LINE L1 -764 6709 6640 6 1706 899 333 22 41 chr4 146949874 146950237 -8679883 - ORR1D2 LTR MaLR -8 362 7 6 1706 23 33 0 0 chr4 146952646 146952676 -8677444 + AT_rich Low_complexity Low_complexity 1 30 0 6 1706 236 332 90 47 chr4 146953121 146953379 -8676741 + Tigger1 DNA MER2_type 1720 1995 -423 6 1706 2601 132 42 38 chr4 146953379 146953859 -8676261 - RLTR45 LTR ERVK 0 482 1 6 1706 236 332 90 47 chr4 146953859 146953944 -8676176 + Tigger1 DNA MER2_type 1996 2078 -340 6 1706 784 62 0 42 chr4 146953927 146954045 -8676075 - B2_Mm1t SINE B2 -7 186 74 6 1706 345 361 15 8 chr4 146954645 146954776 -8675344 - B3 SINE B2 -25 191 60 6 1706 929 132 0 40 chr4 146955117 146955267 -8674853 - B1_Mus2 SINE Alu -2 145 2 6 1706 227 330 25 8 chr4 146955378 146955497 -8674623 + MurSatRep1 Unknown Unknown 641 761 -1376 6 1706 2172 196 27 5 chr4 146956160 146956607 -8673513 - Lx2 LINE L1 0 6997 6541 6 1706 508 138 0 0 chr4 146956607 146956694 -8673426 - Lx2 LINE L1 -578 6419 6333 6 1706 258 32 0 0 chr4 146956801 146956832 -8673288 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1706 1386 142 7 7 chr4 146957311 146958516 -8671604 + MMSAT4 Satellite Satellite 1 1205 0 6 1706 229 262 124 19 chr4 146958932 146959037 -8671083 + RMER15 LTR ERVL 1 116 -459 6 1706 589 320 85 14 chr4 146959094 146959389 -8670731 + RMER15 LTR ERVL 258 573 -2 6 1706 329 301 24 12 chr4 146959448 146959532 -8670588 + URR1B DNA MER1_type 2 86 -139 6 1706 3370 29 171 0 chr4 146961665 146962086 -8668034 + MT2_Mm LTR ERVL 1 493 0 6 1706 47507 14 6 0 chr4 146962086 146967423 -8662697 + MERVL-int LTR ERVL 1 5371 -114 6 1706 371 111 26 53 chr4 146967423 146967499 -8662621 + ORR1A3-int LTR MaLR 567 640 -1323 6 1706 314 0 0 0 chr4 146967499 146967537 -8662583 + MERVL-int LTR ERVL 5448 5485 0 6 1706 3385 26 171 0 chr4 146967537 146967958 -8662162 + MT2_Mm LTR ERVL 1 493 0 6 1706 207 0 0 0 chr4 146968115 146968138 -8661982 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1706 1133 56 14 0 chr4 146968138 146968282 -8661838 - B1_Mm SINE Alu 0 147 2 6 1706 27 0 0 0 chr4 146968471 146968498 -8661622 + AT_rich Low_complexity Low_complexity 1 27 0 6 1706 5862 125 41 51 chr4 146968502 146970138 -8659982 - L1_Mus3 LINE L1 -6 6632 5025 6 1706 7357 81 46 13 chr4 146970124 146971194 -8658926 + L1_Mus3 LINE L1 3945 5049 -834 6 1706 2275 252 22 63 chr4 146971415 146972179 -8657941 - MurERV4-int LTR ERVK -2029 3231 1713 6 1706 216 209 0 0 chr4 146972767 146972810 -8657310 + A-rich Low_complexity Low_complexity 1 43 0 6 1706 1505 33 39 0 chr4 146972850 146973031 -8657089 + B2_Mm1t SINE B2 1 188 -5 6 1706 1140 266 115 32 chr4 146973933 146974341 -8655779 - RMER10A LTR ERVL 0 442 1 6 1706 492 233 29 17 chr4 146974443 146974618 -8655502 + Lx2B LINE L1 6036 6212 -788 6 1706 783 127 14 29 chr4 146974618 146974756 -8655364 + ORR1A2 LTR MaLR 183 318 -9 6 1706 756 125 25 0 chr4 146975675 146975795 -8654325 - Lx LINE L1 -619 6035 5913 6 1706 3438 137 33 3 chr4 146975795 146976374 -8653746 + Lx LINE L1 6043 6638 -16 6 1706 21 0 0 0 chr4 146976475 146976496 -8653624 + AT_rich Low_complexity Low_complexity 1 21 0 6 1706 1280 99 28 0 chr4 146977282 146977463 -8652657 + B2_Mm2 SINE B2 1 186 -9 6 1706 534 317 86 6 chr4 146977463 146977625 -8652495 + B3 SINE B2 24 198 -18 6 1706 192 284 61 44 chr4 146978082 146978196 -8651924 - L2a LINE L2 -6 3420 3305 6 1706 710 193 44 7 chr4 146978530 146978666 -8651454 + B1_Mur2 SINE Alu 7 147 -2 6 1706 211 280 20 0 chr4 146978750 146978800 -8651320 - RSINE1 SINE B4 -106 59 9 6 1706 300 239 0 15 chr4 146978965 146979033 -8651087 - ID4_ SINE ID -14 69 3 6 1706 579 211 47 0 chr4 146979142 146979270 -8650850 + B1_Mus2 SINE Alu 1 134 -13 6 1706 195 69 0 0 chr4 146979270 146979299 -8650821 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 1706 863 225 32 32 chr4 146979307 146979523 -8650597 - B3 SINE B2 0 216 1 6 1706 238 247 59 49 chr4 146979526 146979628 -8650492 + MIR SINE MIR 125 227 -35 6 1706 575 289 39 43 chr4 146979752 146979988 -8650132 - ID_B1 SINE B4 -50 242 8 6 1706 920 217 19 33 chr4 146980024 146980238 -8649882 - B3 SINE B2 -5 211 1 6 1706 2765 108 27 2 chr4 146980260 146980670 -8649450 - L1_Mus1 LINE L1 -4 6563 6144 6 1706 7553 75 2 0 chr4 146980681 146981718 -8648402 - L1_Mus1 LINE L1 0 6654 5535 6 1706 275 163 0 0 chr4 146981793 146981836 -8648284 - ORR1A3-int LTR MaLR -1233 730 688 6 1706 2141 34 38 0 chr4 146982201 146982463 -8647657 + L1Md_T LINE L1 6309 6580 -2 6 1706 213 366 0 40 chr4 146982624 146982698 -8647422 + B4 SINE B4 87 157 -135 6 1706 929 34 0 0 chr4 146983128 146983246 -8646874 + B1_Mus2 SINE Alu 21 138 -9 6 1706 1163 62 7 0 chr4 146983295 146983441 -8646679 + B1_Mus1 SINE Alu 1 147 -1 6 1706 276 318 46 9 chr4 146985799 146985907 -8644213 - URR1B DNA MER1_type -112 113 2 6 1706 1049 183 2 2 chr4 146986815 146987761 -8642359 - MMSAT4 Satellite Satellite -4 946 1 6 1706 2654 177 16 6 chr4 146988230 146988725 -8641395 + Lx2 LINE L1 6492 6991 -6 7 1706 250 344 8 8 chr4 146989382 146989508 -8640612 - MurSatRep1 Unknown Unknown -1392 745 620 7 1706 931 132 65 18 chr4 146989795 146989965 -8640155 + B2_Mm1t SINE B2 2 179 -14 7 1706 391 114 7 9 chr4 146989993 146990105 -8640015 + B2_Mm2 SINE B2 47 193 -2 7 1706 327 322 32 38 chr4 146990184 146990342 -8639778 + B3 SINE B2 60 216 0 7 1706 1073 96 0 7 chr4 146994188 146994335 -8635785 - B1_Mus1 SINE Alu -2 146 1 7 1706 4410 94 7 122 chr4 146994425 146995273 -8634847 + RMER17A LTR ERVK 1 751 0 7 1706 21 0 0 0 chr4 146995624 146995645 -8634475 + AT_rich Low_complexity Low_complexity 1 21 0 7 1706 362 297 125 0 chr4 146996067 146996259 -8633861 + B3 SINE B2 1 216 0 7 1706 405 0 0 0 chr4 146996484 146996529 -8633591 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1706 229 216 0 0 chr4 146997985 146998036 -8632084 + A-rich Low_complexity Low_complexity 4 54 0 7 1706 312 176 0 0 chr4 146998377 146998445 -8631675 + CT-rich Low_complexity Low_complexity 3 70 0 7 1706 209 57 0 28 chr4 147000284 147000320 -8629800 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1 1706 734 329 38 22 chr4 147000434 147000748 -8629372 + ORR1D2 LTR MaLR 43 361 -9 2 1706 1049 82 7 7 chr4 147001476 147001623 -8628497 + B1_Mus2 SINE Alu 1 147 0 3 1706 1544 43 11 0 chr4 147002148 147002334 -8627786 + B2_Mm1a SINE B2 1 188 -5 4 1706 303 382 24 14 chr4 147002357 147002567 -8627553 + B3 SINE B2 2 213 -3 5 1706 965 265 91 123 chr4 147002617 147002886 -8627234 + RLTR25A LTR ERVK 53 333 -770 6 1706 4533 198 40 16 chr4 147002886 147003822 -8626298 + RMER17B LTR ERVK 1 958 0 7 1706 965 265 91 123 chr4 147003822 147004089 -8626031 + RLTR25A LTR ERVK 334 572 -531 6 1706 249 250 0 165 chr4 147004045 147004110 -8626010 + MT2B LTR ERVL 210 259 -342 8 1706 238 347 73 5 chr4 147004110 147004246 -8625874 + B1_Mur3 SINE Alu 3 147 0 9 1706 7005 141 6 11 chr4 147004378 147004975 -8625145 + Lx3B LINE L1 4715 5307 -579 1 1706 3477 18 8 0 chr4 147004975 147005368 -8624752 - MTA_Mm LTR MaLR 0 396 1 1 1706 9713 16 3 0 chr4 147005368 147006463 -8623657 - MTA_Mm-int LTR MaLR 0 1098 1 1 1706 3453 25 5 0 chr4 147006463 147006857 -8623263 - MTA_Mm LTR MaLR 0 396 1 1 1706 7005 155 68 12 chr4 147006857 147008360 -8621760 + Lx3B LINE L1 5308 6919 -54 1 1706 31 0 0 0 chr4 147008365 147008396 -8621724 + AT_rich Low_complexity Low_complexity 1 31 0 1 1706 224 140 40 0 chr4 147008854 147008904 -8621216 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 1706 2463 102 6 9 chr4 147008985 147009331 -8620789 + IAPLTR4 LTR ERVK 1 345 0 1 1706 1540 176 12 102 chr4 147009551 147009744 -8620376 + RMER6A LTR ERVK 389 575 -181 1 1706 705 112 173 16 chr4 147009744 147009871 -8620249 + B1_Mus1 SINE Alu 2 148 0 1 1706 1540 176 12 102 chr4 147009871 147010081 -8620039 + RMER6A LTR ERVK 576 756 0 1 1706 3355 113 14 6 chr4 147010228 147010735 -8619385 - L1_Mus3 LINE L1 0 6638 6128 1 1706 868 305 91 28 chr4 147010897 147011359 -8618761 + Lx8 LINE L1 6464 6954 -519 1 1706 220 191 0 0 chr4 147013509 147013551 -8616569 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 1 1706 1564 222 35 18 chr4 147013752 147014146 -8615974 + RMER6A LTR ERVK 354 754 -2 2 1706 458 361 101 11 chr4 147014447 147014903 -8615217 + Lx8 LINE L1 6466 6962 -511 2 1706 881 55 69 23 chr4 147015444 147015575 -8614545 + B1_Mus1 SINE Alu 12 148 0 2 1706 201 132 0 0 chr4 147016815 147016853 -8613267 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2 1706 1617 32 16 0 chr4 147016870 147017059 -8613061 - B2_Mm1a SINE B2 0 193 2 2 1706 552 89 0 0 chr4 147017869 147017948 -8612172 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 2 1706 933 248 87 130 chr4 147017948 147018550 -8611570 - RLTR1D LTR ERV1 -13 611 52 2 1706 654 13 0 0 chr4 147018571 147018646 -8611474 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 2 1706 1885 214 67 120 chr4 147019138 147019897 -8610223 - RLTR40 LTR ERVK -98 719 1 2 1706 1221 305 68 7 chr4 147020011 147020453 -8609667 + Lx6 LINE L1 6172 6640 -820 2 1706 456 208 0 0 chr4 147020474 147020575 -8609545 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1706 263 253 0 62 chr4 147021196 147021276 -8608844 - B1_Mm SINE Alu -47 100 26 3 1706 1149 288 49 51 chr4 147021449 147021654 -8608466 + RLTR18 LTR ERVK 1 203 -413 3 1706 999 102 7 0 chr4 147021654 147021791 -8608329 + B1_Mus1 SINE Alu 2 139 -9 3 1706 207 0 0 0 chr4 147021791 147021814 -8608306 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1706 1149 259 25 35 chr4 147021814 147022148 -8607972 + RLTR18 LTR ERVK 204 510 -106 3 1706 335 303 39 39 chr4 147022179 147022361 -8607759 + RMER21B LTR ERV1 326 507 -335 3 1706 245 313 36 0 chr4 147022543 147022626 -8607494 + RLTR18 LTR ERVK 427 512 0 3 1706 222 37 0 0 chr4 147022941 147022968 -8607152 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1706 480 254 18 0 chr4 147022968 147023082 -8607038 + Lx6 LINE L1 7321 7436 -24 2 1706 337 141 23 23 chr4 147023080 147023167 -8606953 - L1_Mur2 LINE L1 -2113 3764 3678 3 1706 1167 82 0 0 chr4 147024074 147024221 -8605899 + B1_Mus2 SINE Alu 1 147 0 3 1706 279 133 0 0 chr4 147024224 147024269 -8605851 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1706 264 154 0 0 chr4 147024839 147024891 -8605229 + GA-rich Low_complexity Low_complexity 2 53 0 4 1706 624 292 87 32 chr4 147025481 147025700 -8604420 - MT2A LTR ERVL -145 388 158 4 1706 300 298 133 52 chr4 147025780 147025853 -8604267 + RMER15 LTR ERVL 289 355 -220 4 1706 2012 114 9 38 chr4 147025853 147026171 -8603949 - RLTR27 LTR ERVK 0 309 1 4 1706 300 298 133 52 chr4 147026171 147026345 -8603775 + RMER15 LTR ERVL 356 556 -19 4 1706 1519 64 5 0 chr4 147026836 147027024 -8603096 - B2_Mm1a SINE B2 -4 189 1 4 1706 457 258 114 0 chr4 147027239 147027371 -8602749 - B4A SINE B4 -6 286 140 4 1706 671 75 85 0 chr4 147027438 147027544 -8602576 + LTRIS5 LTR ERV1 1 115 -332 4 1706 637 117 43 49 chr4 147027540 147027682 -8602438 + LTRIS5 LTR ERV1 305 512 0 4 1706 258 170 87 165 chr4 147027682 147027809 -8602311 + MMVL30-int LTR ERV1 1 117 -3581 4 1706 3732 36 10 64 chr4 147028017 147028519 -8601601 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1706 246 32 0 0 chr4 147028921 147028952 -8601168 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1706 216 97 0 0 chr4 147028961 147028992 -8601128 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1706 1233 54 0 0 chr4 147028992 147029139 -8600981 - B1_Mm SINE Alu 0 147 1 5 1706 941 127 108 6 chr4 147029144 147029311 -8600809 + RMER16-int LTR ERVK 141 324 -5082 5 1706 647 198 35 0 chr4 147029299 147029415 -8600705 + RMER16-int LTR ERVK 687 806 -4600 5 1706 311 73 0 0 chr4 147029552 147029593 -8600527 + RLTR6-int LTR ERV1 7737 7777 -1 5 1706 645 93 84 0 chr4 147029594 147029701 -8600419 + LTRIS5 LTR ERV1 1 116 -331 5 1706 648 111 15 3 chr4 147029740 147029854 -8600266 + LTRIS3 LTR ERV1 331 512 0 5 1706 21 0 0 0 chr4 147030033 147030054 -8600066 + AT_rich Low_complexity Low_complexity 1 21 0 5 1706 267 265 28 2 chr4 147030352 147030432 -8599688 - B1_Mur1 SINE Alu -16 133 53 5 1706 869 99 152 0 chr4 147030625 147030776 -8599344 - B2_Mm2 SINE B2 -20 175 2 5 1706 508 282 37 49 chr4 147030821 147030985 -8599135 - RSINE1 SINE B4 0 165 4 5 1706 25 31 0 0 chr4 147031000 147031032 -8599088 + AT_rich Low_complexity Low_complexity 1 32 0 5 1706 271 254 28 0 chr4 147031080 147031151 -8598969 - B3A SINE B2 -125 73 1 5 1706 1350 89 5 21 chr4 147031208 147031402 -8598718 - B2_Mm1a SINE B2 -2 191 1 6 1706 740 156 48 30 chr4 147031582 147031747 -8598373 - URR1A DNA MER1_type -2 224 57 6 1706 688 192 279 0 chr4 147031974 147031993 -8598127 - B3 SINE B2 -10 206 188 6 1706 357 43 0 0 chr4 147031993 147032040 -8598080 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1706 688 192 279 0 chr4 147032040 147032181 -8597939 - B3 SINE B2 -29 187 2 6 1706 351 0 0 0 chr4 147032903 147032942 -8597178 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1706 2858 12 3 0 chr4 147033088 147033409 -8596711 + RLTRETN_Mm LTR ERVK 1 322 0 6 1706 2951 68 42 0 chr4 147033628 147034008 -8596112 + MTA_Mm LTR MaLR 1 396 0 6 1706 265 261 43 14 chr4 147034520 147034590 -8595530 + B1_Mus1 SINE Alu 13 84 -64 6 1706 653 64 0 21 chr4 147034603 147034699 -8595421 + (GGGAGA)n Simple_repeat Simple_repeat 3 96 0 6 1706 242 118 0 38 chr4 147034704 147034757 -8595363 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 6 1706 584 346 43 48 chr4 147034928 147035389 -8594731 - RLTR6-int LTR ERV1 -656 6950 6433 7 1706 14050 252 37 35 chr4 147036129 147041876 -8588244 - RLTR6-int LTR ERV1 -1978 5800 1 7 1706 3925 54 2 32 chr4 147041876 147042373 -8587747 - LTRIS_Mm LTR ERV1 0 482 1 7 1706 6786 21 0 3 chr4 147042373 147043231 -8586889 - MTA_Mm-int LTR MaLR -243 855 1 7 1706 3454 35 2 0 chr4 147043231 147043626 -8586494 - MTA_Mm LTR MaLR 0 396 1 7 1706 624 235 145 12 chr4 147043969 147044147 -8585973 - B3 SINE B2 -13 182 1 7 1706 916 179 107 5 chr4 147044278 147044474 -8585646 - B3 SINE B2 0 216 1 7 1706 248 282 0 27 chr4 147044477 147044550 -8585570 - PB1D10 SINE Alu -6 111 41 7 1706 180 0 0 0 chr4 147044761 147044781 -8585339 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1706 420 283 129 28 chr4 147044832 147045010 -8585110 - B3A SINE B2 0 198 3 7 1706 231 234 45 30 chr4 147045025 147045091 -8585029 - RSINE1 SINE B4 -84 81 15 7 1706 1072 155 17 0 chr4 147045134 147045315 -8584805 - B2_Mm2 SINE B2 -9 186 3 7 1706 182 262 18 24 chr4 147045366 147045530 -8584590 + (CA)n Simple_repeat Simple_repeat 2 164 0 7 1706 540 30 0 0 chr4 147045559 147045625 -8584495 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1706 207 0 0 0 chr4 147045697 147045720 -8584400 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1706 560 225 45 23 chr4 147045874 147046006 -8584114 + B3 SINE B2 77 211 -5 8 1706 582 296 25 45 chr4 147046039 147046281 -8583839 + ID_B1 SINE B4 7 242 -50 8 1706 1323 99 28 0 chr4 147046785 147046966 -8583154 - B2_Mm1t SINE B2 -6 187 2 8 1706 330 256 44 11 chr4 147047382 147047473 -8582647 - URR1B DNA MER1_type -129 96 3 8 1706 298 211 165 0 chr4 147047541 147047650 -8582470 - RMER15 LTR ERVL -17 558 432 8 1706 1445 118 1 1 chr4 147048162 147049787 -8580333 - MMSAT4 Satellite Satellite -11 1625 1 8 1706 477 0 0 0 chr4 147050267 147050320 -8579800 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1706 5049 90 34 8 chr4 147050456 147051160 -8578960 + L1Md_F2 LINE L1 5861 6582 0 8 1706 2222 194 26 4 chr4 147051185 147051640 -8578480 + Lx2 LINE L1 6533 6997 0 8 1706 1062 96 0 33 chr4 147052535 147052686 -8577434 + B1_Mus2 SINE Alu 2 147 0 9 1706 785 40 10 0 chr4 147052889 147052990 -8577130 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 9 1706 1274 124 21 0 chr4 147053104 147053290 -8576830 - B2_Mm2 SINE B2 -4 191 2 9 1706 334 327 18 25 chr4 147053319 147053482 -8576638 + B3 SINE B2 55 216 0 9 1706 684 90 9 18 chr4 147054055 147054168 -8575952 + B2_Mm1a SINE B2 74 185 -8 9 1706 24 53 0 0 chr4 147054927 147054965 -8575155 + AT_rich Low_complexity Low_complexity 1 38 0 9 1706 549 64 0 0 chr4 147056532 147056610 -8573510 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1706 459 0 0 0 chr4 147057198 147057249 -8572871 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 9 1706 281 268 27 134 chr4 147057269 147057381 -8572739 + B1_Mur2 SINE Alu 21 149 0 9 1706 824 299 59 91 chr4 147057478 147057850 -8572270 + ORR1D2 LTR MaLR 7 366 -8 9 1706 24 32 0 0 chr4 147058874 147058905 -8571215 + AT_rich Low_complexity Low_complexity 1 31 0 1 1706 2137 91 27 0 chr4 147058930 147059228 -8570892 - L1_Mus1 LINE L1 -13 6554 6249 1 1706 3038 176 166 5 chr4 147059450 147060239 -8569881 + L1_Mur2 LINE L1 4703 5618 -259 1 1706 234 0 0 0 chr4 147060312 147060338 -8569782 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1706 475 293 0 10 chr4 147060532 147060632 -8569488 - B3A SINE B2 -75 123 25 1 1706 369 62 0 0 chr4 147060656 147060704 -8569416 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 1706 6230 143 64 86 chr4 147060732 147062100 -8568020 + Lx3A LINE L1 5639 6975 -6 1 1706 252 86 0 0 chr4 147062103 147062138 -8567982 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 1 1706 389 262 62 72 chr4 147062283 147062559 -8567561 + RLTR25B LTR ERVK 700 1028 0 1 1707 599 317 14 28 chr4 147063543 147063754 -8566366 - B3 SINE B2 0 216 9 1 1707 431 354 73 15 chr4 147063838 147064234 -8565886 - Tigger1 DNA MER2_type -288 2130 1712 1 1707 28 48 0 0 chr4 147064261 147064303 -8565817 + AT_rich Low_complexity Low_complexity 1 42 0 1 1707 3030 20 9 0 chr4 147064314 147064657 -8565463 - ORR1A0 LTR MaLR 0 346 1 1 1707 6049 149 15 10 chr4 147065061 147066872 -8563248 + Lx3B LINE L1 4860 6680 -293 1 1707 252 256 13 0 chr4 147067847 147067925 -8562195 + L1MEg LINE L1 1306 1384 -4700 1 1707 1882 235 40 57 chr4 147068426 147069017 -8561103 + RMER6A LTR ERVK 56 579 -177 1 1707 804 72 173 16 chr4 147069017 147069144 -8560976 + B1_Mus1 SINE Alu 2 148 0 1 1707 1882 188 42 89 chr4 147069144 147069353 -8560767 + RMER6A LTR ERVK 580 755 -1 1 1707 3116 143 12 4 chr4 147069492 147069999 -8560121 - L1_Mus3 LINE L1 0 6638 6128 1 1707 843 315 73 15 chr4 147070161 147070625 -8559495 + Lx8 LINE L1 6464 6954 -519 1 1707 204 214 0 0 chr4 147072774 147072816 -8557304 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 1 1707 1621 234 47 3 chr4 147073016 147073252 -8556868 + RMER6A LTR ERVK 354 602 -154 1 1707 1108 86 0 0 chr4 147073252 147073391 -8556729 + B1_Mus2 SINE Alu 2 140 -7 1 1707 1621 234 47 3 chr4 147073391 147073540 -8556580 + RMER6A LTR ERVK 603 754 -2 1 1707 567 321 112 20 chr4 147073838 147074286 -8555834 + Lx8 LINE L1 6466 6954 -519 1 1707 1146 81 0 0 chr4 147074836 147074984 -8555136 + B1_Mus1 SINE Alu 1 148 0 1 1707 200 35 35 0 chr4 147075611 147075640 -8554480 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1 1707 1280 96 16 5 chr4 147076058 147076246 -8553874 + B2_Mm1t SINE B2 2 191 -2 1 1707 183 80 0 0 chr4 147076878 147076903 -8553217 + (CTTG)n Simple_repeat Simple_repeat 3 27 0 1 1707 180 97 0 0 chr4 147076905 147076936 -8553184 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 1707 567 122 0 0 chr4 147077741 147077831 -8552289 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1 1707 1919 236 102 112 chr4 147078294 147079108 -8551012 - RLTR40 LTR ERVK -11 806 1 1 1707 999 305 17 3 chr4 147079299 147079661 -8550459 + Lx6 LINE L1 6268 6634 -826 1 1707 666 109 0 0 chr4 147079689 147079790 -8550330 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1707 281 267 0 62 chr4 147080410 147080490 -8549630 - B1_Mm SINE Alu -47 100 26 1 1707 2179 129 166 24 chr4 147080561 147080983 -8549137 + RLTR45 LTR ERVK 1 482 0 1 1707 1590 38 0 0 chr4 147081020 147081205 -8548915 + B2_Mm1t SINE B2 2 186 -7 1 1707 1442 283 45 38 chr4 147081284 147081791 -8548329 + RLTR18 LTR ERVK 1 511 -105 1 1707 419 286 38 38 chr4 147081848 147082033 -8548087 + RMER21B LTR ERV1 323 507 -335 1 1707 271 325 36 0 chr4 147082215 147082298 -8547822 + RLTR18B LTR ERVK 427 512 0 1 1707 216 86 0 0 chr4 147082626 147082661 -8547459 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1707 365 268 18 9 chr4 147082663 147082776 -8547344 + Lx6 LINE L1 7323 7436 -24 1 1707 385 130 29 29 chr4 147082774 147082877 -8547243 - L1_Mur2 LINE L1 -2113 3764 3662 1 1707 212 302 0 0 chr4 147084271 147084324 -8545796 - PB1D10 SINE Alu -31 86 34 1 1707 1156 133 17 0 chr4 147084827 147085007 -8545113 - B2_Mm2 SINE B2 -12 183 1 1 1707 914 148 7 21 chr4 147085195 147085340 -8544780 - B1_Mus1 SINE Alu -5 143 1 1 1707 416 215 16 116 chr4 147085238 147085359 -8544761 - MT2B LTR ERVL -344 257 149 1 1707 342 0 0 0 chr4 147085683 147085721 -8544399 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1707 5095 189 40 34 chr4 147086811 147087919 -8542201 + RLTR13D3 LTR ERVK 1 1114 0 1 1707 1838 131 3 59 chr4 147088316 147088656 -8541464 + BGLII_B LTR ERVK 3 323 -118 1 1707 808 147 27 27 chr4 147088762 147088909 -8541211 + B1_Mus1 SINE Alu 2 148 0 1 1707 5282 252 51 27 chr4 147088946 147091234 -8538886 + MYSERV6-int LTR ERVK 2883 4626 -1924 1 1707 240 239 126 32 chr4 147091234 147091329 -8538791 + RMER4A LTR ERVK 326 429 -37 1 1707 776 181 60 0 chr4 147091336 147091552 -8538568 + MYSERV6-int LTR ERVK 1036 1264 -1062 1 1707 261 238 78 111 chr4 147091555 147091645 -8538475 - RMER6D LTR ERVK -34 686 600 1 1707 3026 185 73 17 chr4 147091645 147092488 -8537632 + MYSERV6-int LTR ERVK 1358 2248 -78 1 1707 2483 151 16 18 chr4 147092553 147092992 -8537128 + BGLII_B LTR ERVK 4 441 0 1 1707 464 279 48 12 chr4 147093109 147093276 -8536844 + Lx2B LINE L1 6822 6994 -6 1 1707 3807 219 158 29 chr4 147093305 147093654 -8536466 + L1_Mur2 LINE L1 3124 3475 -2402 1 1707 1119 95 0 0 chr4 147093654 147093801 -8536319 + B1_Mm SINE Alu 1 147 0 1 1707 3807 219 158 29 chr4 147093801 147093947 -8536173 + L1_Mur2 LINE L1 3476 3812 -2065 1 1707 738 164 43 48 chr4 147093947 147094133 -8535987 + B2_Mm2 SINE B2 3 187 -8 1 1707 3807 219 158 29 chr4 147094133 147094147 -8535973 + L1_Mur2 LINE L1 3813 3821 -2056 1 1707 3011 184 11 33 chr4 147094147 147094761 -8535359 - MT2B LTR ERVL 0 601 1 1 1707 3807 219 158 29 chr4 147094761 147095748 -8534372 + L1_Mur2 LINE L1 3822 4814 -1063 1 1707 817 231 34 29 chr4 147095992 147096197 -8533923 + B3 SINE B2 1 206 -10 1 1707 620 306 19 37 chr4 147096243 147096457 -8533663 + ID_B1 SINE B4 13 222 -2 1 1707 214 278 59 49 chr4 147096602 147096704 -8533416 - MIR SINE MIR -35 227 125 1 1707 826 239 34 19 chr4 147096707 147096916 -8533204 + B3 SINE B2 1 212 -4 1 1707 818 170 43 0 chr4 147096929 147097070 -8533050 - B1_Mus2 SINE Alu 0 147 1 1 1707 266 239 0 29 chr4 147097179 147097248 -8532872 + ID4_ SINE ID 3 69 -14 1 1707 36361 39 1 3 chr4 147097523 147103940 -8526180 - L1Md_T LINE L1 0 6585 86 1 1707 180 0 0 0 chr4 147103970 147103990 -8526130 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1707 762 204 29 0 chr4 147103995 147104132 -8525988 - B1_Mus2 SINE Alu -5 142 2 1 1707 193 312 61 44 chr4 147104465 147104579 -8525541 + L2a LINE L2 3305 3420 -6 1 1707 21 71 0 0 chr4 147104951 147104993 -8525127 + AT_rich Low_complexity Low_complexity 1 42 0 1 1707 716 235 75 38 chr4 147105012 147105198 -8524922 - B3 SINE B2 0 216 24 1 1707 1159 105 6 17 chr4 147105200 147105375 -8524745 - B2_Mm2 SINE B2 -19 176 4 1 1707 5311 189 45 42 chr4 147105575 147106683 -8523437 + RLTR13D3 LTR ERVK 4 1114 0 1 1707 554 41 14 0 chr4 147107664 147107737 -8522383 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1707 3791 129 14 2 chr4 147107958 147108547 -8521573 - Lx LINE L1 -16 6638 6043 1 1707 689 163 0 0 chr4 147108547 147108670 -8521450 + Lx LINE L1 5913 6035 -619 1 1707 455 147 0 0 chr4 147113359 147113434 -8516686 - ORR1A1 LTR MaLR -70 276 202 1 1707 657 212 20 15 chr4 147113434 147113630 -8516490 - Lx2B LINE L1 -788 6212 6016 1 1707 1100 258 126 40 chr4 147113726 147114130 -8515990 + RMER10A LTR ERVL 1 439 -3 1 1707 1162 68 0 0 chr4 147114297 147114444 -8515676 + B1_Mm SINE Alu 1 147 0 1 1707 211 28 27 27 chr4 147114444 147114481 -8515639 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1707 2775 52 0 0 chr4 147115793 147116138 -8513982 - IAPEY2_LTR LTR ERVK -12 345 1 1 1707 2842 107 16 31 chr4 147116138 147116792 -8513328 - IAPEY3-int LTR ERVK 0 7581 6984 1 1707 199 368 44 0 chr4 147116792 147116906 -8513214 - L3b LINE CR1 -29 453 335 1 1707 3362 67 9 0 chr4 147116921 147117369 -8512751 - IAPEY3-int LTR ERVK -4991 2689 2238 1 1707 8645 127 15 37 chr4 147117346 147118838 -8511282 - IAPEY3-int LTR ERVK -5698 1982 524 1 1707 691 152 50 50 chr4 147118837 147118996 -8511124 - IAPLTR4_I LTR ERVK -1290 180 22 1 1707 2807 41 0 11 chr4 147118996 147119345 -8510775 - IAPEY2_LTR LTR ERVK 0 357 13 1 1707 5125 230 24 12 chr4 147120669 147120805 -8509315 + MYSERV6-int LTR ERVK 2548 2689 -6270 1 1707 180 0 0 0 chr4 147120805 147120825 -8509295 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1 1707 5125 230 24 12 chr4 147120825 147121993 -8508127 + MYSERV6-int LTR ERVK 2690 3867 -5092 1 1707 403 240 0 0 chr4 147121993 147122089 -8508031 + L1_Mur2 LINE L1 4043 4138 -1739 1 1707 1257 115 0 0 chr4 147122161 147122353 -8507767 - L1_Mm LINE L1 -835 5048 4857 1 1707 7552 91 5 15 chr4 147122350 147123519 -8506601 - L1_Mm LINE L1 -768 5115 3959 1 1707 6345 101 6 81 chr4 147123518 147123913 -8506207 + L1_Mus1 LINE L1 5025 5420 -1147 1 1707 1041 36 22 0 chr4 147123913 147124050 -8506070 + B1_Mus1 SINE Alu 9 148 0 1 1707 455 293 17 51 chr4 147123914 147124090 -8506030 + B4A SINE B4 94 263 -29 1 1707 6345 101 6 81 chr4 147124090 147125172 -8504948 + L1_Mus1 LINE L1 5421 6507 -60 1 1707 42 20 0 0 chr4 147125178 147125227 -8504893 + AT_rich Low_complexity Low_complexity 1 49 0 1 1707 22 0 0 0 chr4 147125552 147125574 -8504546 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 1586 21 21 0 chr4 147125586 147125772 -8504348 - B2_Mm1a SINE B2 -3 190 1 1 1707 360 264 43 11 chr4 147127856 147127948 -8502172 - URR1B DNA MER1_type -129 96 2 1 1707 444 351 20 12 chr4 147128057 147128305 -8501815 - RMER15 LTR ERVL -78 497 248 1 1707 1207 144 2 1 chr4 147128691 147129975 -8500145 - MMSAT4 Satellite Satellite -14 1284 1 1 1707 198 0 0 0 chr4 147130349 147130371 -8499749 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1707 481 136 11 0 chr4 147130592 147130680 -8499440 + Lx2 LINE L1 6331 6419 -578 1 1707 2127 176 39 7 chr4 147130680 147131120 -8499000 + Lx2 LINE L1 6541 6994 -3 1 1707 969 68 29 36 chr4 147132020 147132158 -8497962 + B1_Mus2 SINE Alu 2 138 -9 1 1707 269 26 0 26 chr4 147132158 147132197 -8497923 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1707 797 88 0 0 chr4 147133016 147133129 -8496991 + B2_Mm1t SINE B2 74 186 -7 2 1707 302 357 77 9 chr4 147133113 147133449 -8496671 - Tigger1 DNA MER2_type -340 2078 1720 2 1707 288 0 0 0 chr4 147136047 147136079 -8494041 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1707 246 32 0 0 chr4 147136198 147136229 -8493891 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2 1707 868 310 37 34 chr4 147136340 147136664 -8493456 + ORR1D2 LTR MaLR 43 367 -3 2 1707 2113 91 27 3 chr4 147137828 147138127 -8491993 - L1_Mus1 LINE L1 -13 6554 6249 2 1707 7266 106 7 40 chr4 147138353 147138747 -8491373 + Lx3_Mus LINE L1 4717 5108 -778 2 1707 1204 68 0 0 chr4 147138747 147138895 -8491225 + B1_Mus1 SINE Alu 1 148 0 2 1707 7266 132 45 68 chr4 147138895 147140844 -8489276 + Lx3_Mus LINE L1 5109 6994 -15 2 1707 197 108 0 26 chr4 147140847 147140885 -8489235 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 2 1707 496 233 98 58 chr4 147141013 147141284 -8488836 + RLTR25B LTR ERVK 626 1028 0 2 1707 3589 18 136 0 chr4 147141687 147142121 -8487999 + MT2_Mm LTR ERVL 1 493 0 2 1707 9160 38 2 0 chr4 147142125 147143219 -8486901 + MTA_Mm-int LTR MaLR 3 1098 0 2 1707 3213 31 0 0 chr4 147143219 147143606 -8486514 + MTA_Mm LTR MaLR 1 387 -9 2 1707 636 307 14 28 chr4 147144184 147144395 -8485725 - B3 SINE B2 0 216 9 2 1707 287 365 82 26 chr4 147144478 147144869 -8485251 - Tigger1 DNA MER2_type -294 2124 1712 2 1707 28 48 0 0 chr4 147144896 147144938 -8485182 + AT_rich Low_complexity Low_complexity 1 42 0 2 1707 1319 118 9 0 chr4 147145311 147145531 -8484589 + L1_Mur1 LINE L1 4860 5081 -805 2 1707 316 324 14 14 chr4 147145852 147145996 -8484124 + Lx8 LINE L1 6469 6612 -861 2 1707 231 269 13 0 chr4 147147517 147147595 -8482525 + L1MEg LINE L1 1306 1384 -4700 2 1707 318 50 0 0 chr4 147147651 147147691 -8482429 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1707 1214 224 48 48 chr4 147148138 147148744 -8481376 + RMER6A LTR ERVK 56 601 -155 2 1707 773 76 174 16 chr4 147148744 147148865 -8481255 + B1_Mus1 SINE Alu 2 141 -7 2 1707 22 0 0 0 chr4 147148875 147148897 -8481223 + AT_rich Low_complexity Low_complexity 1 22 0 2 1707 537 221 8 23 chr4 147148898 147149028 -8481092 + RMER6A LTR ERVK 571 698 -58 2 1707 198 0 0 0 chr4 147150116 147150138 -8479982 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2 1707 357 145 0 0 chr4 147150980 147151042 -8479078 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2 1707 2169 229 67 110 chr4 147151536 147152352 -8477768 - RLTR40 LTR ERVK -36 781 1 2 1707 26 0 0 0 chr4 147152438 147152464 -8477656 + AT_rich Low_complexity Low_complexity 1 26 0 2 1707 921 296 13 0 chr4 147152556 147152860 -8477260 + Lx6 LINE L1 6270 6577 -883 2 1707 1396 284 53 35 chr4 147152916 147153426 -8476694 + RLTR18 LTR ERVK 1 519 -97 2 1707 401 291 39 39 chr4 147153480 147153662 -8476458 + RMER21B LTR ERV1 326 507 -335 2 1707 313 301 36 0 chr4 147153844 147153927 -8476193 + RLTR18B LTR ERVK 427 512 0 2 1707 449 222 47 8 chr4 147154258 147154385 -8475735 + Lx7 LINE L1 7559 7690 -6 2 1707 366 168 19 19 chr4 147154380 147154483 -8475637 - L1_Mur2 LINE L1 -2113 3764 3662 2 1707 210 71 0 0 chr4 147156324 147156352 -8473768 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1707 994 150 58 0 chr4 147156437 147156610 -8473510 - B2_Mm2 SINE B2 -12 183 1 2 1707 3951 177 27 26 chr4 147156756 147157610 -8472510 - RLTR13A LTR ERVK 0 855 1 2 1707 846 176 7 21 chr4 147157659 147157804 -8472316 - B1_Mus1 SINE Alu -5 143 1 2 1707 345 250 43 108 chr4 147157684 147157823 -8472297 - MT2B LTR ERVL -323 278 149 2 1707 534 31 0 0 chr4 147158146 147158210 -8471910 + (TTA)n Simple_repeat Simple_repeat 3 66 0 2 1707 5169 186 42 36 chr4 147159297 147160405 -8469715 + RLTR13D3 LTR ERVK 1 1114 0 2 1707 1875 124 3 58 chr4 147160802 147161144 -8468976 + BGLII_B LTR ERVK 1 323 -118 2 1707 846 150 0 0 chr4 147161250 147161377 -8468743 + B1_Mus1 SINE Alu 2 128 -20 2 1707 186 43 0 0 chr4 147161385 147161408 -8468712 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1707 5639 237 57 27 chr4 147161429 147164081 -8466039 + MYSERV16_I-int LTR ERVK 37 4617 -4342 2 1707 1206 48 0 0 chr4 147164081 147164227 -8465893 + B1_Mus2 SINE Alu 1 146 -1 2 1707 5639 230 71 51 chr4 147164227 147165086 -8465034 + MYSERV16_I-int LTR ERVK 1322 2213 -113 2 1707 2250 168 21 18 chr4 147165187 147165623 -8464497 + BGLII_B LTR ERVK 4 440 -1 2 1707 501 60 0 0 chr4 147165680 147165747 -8464373 + B1_Mur4 SINE Alu 84 150 0 2 1707 1617 212 4 86 chr4 147166200 147166464 -8463656 + L1_Mur2 LINE L1 4835 5094 -783 2 1707 1487 38 16 16 chr4 147166464 147166650 -8463470 + B2_Mm1a SINE B2 2 187 -6 2 1707 1617 212 4 86 chr4 147166650 147166886 -8463234 + L1_Mur2 LINE L1 5095 5294 -583 2 1707 3518 128 42 34 chr4 147166891 147167096 -8463024 + L1_Mus3 LINE L1 6017 6211 -427 2 1707 883 112 0 0 chr4 147167096 147167230 -8462890 + B1_Mus1 SINE Alu 1 134 -14 2 1707 1371 62 0 0 chr4 147167231 147167409 -8462711 + (GAGAA)n Simple_repeat Simple_repeat 2 179 0 2 1707 2366 125 62 5 chr4 147167415 147167793 -8462327 + L1_Mus3 LINE L1 6213 6611 -27 2 1707 1068 82 0 13 chr4 147167793 147167942 -8462178 + B1_Mus2 SINE Alu 1 147 0 2 1707 2366 125 62 5 chr4 147167942 147167966 -8462154 + L1_Mus3 LINE L1 6612 6638 0 2 1707 2305 174 91 51 chr4 147167979 147168038 -8462082 + Lx2 LINE L1 5310 5368 -515 2 1707 1679 31 0 0 chr4 147168038 147168230 -8461890 + B2_Mm1a SINE B2 2 193 0 2 1707 5794 151 43 21 chr4 147168230 147169428 -8460692 + Lx2 LINE L1 5369 6607 -390 2 1707 36682 68 1 13 chr4 147170540 147176693 -8453427 - L1Md_F2 LINE L1 0 6582 511 2 1707 249 322 17 28 chr4 147176874 147177050 -8453070 + L1_Mur3 LINE L1 3757 3930 -1950 2 1707 933 83 23 0 chr4 147177071 147177204 -8452916 + B2_Mm2 SINE B2 47 182 -13 2 1707 516 32 0 0 chr4 147177204 147177266 -8452854 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 2 1707 1300 96 21 5 chr4 147177626 147177814 -8452306 + B2_Mm1a SINE B2 1 191 -2 2 1707 240 191 0 0 chr4 147178658 147178700 -8451420 + L1MEe LINE L1 180 221 -4633 2 1707 972 119 14 0 chr4 147178786 147178929 -8451191 + B1_Mus1 SINE Alu 3 147 -1 2 1707 939 95 73 0 chr4 147179015 147179152 -8450968 + B1_Mus2 SINE Alu 1 147 0 2 1707 2293 215 33 109 chr4 147179562 147180320 -8449800 + RMER6A LTR ERVK 57 756 0 2 1707 692 333 104 20 chr4 147180622 147181073 -8449047 + Lx8 LINE L1 6466 6954 -519 2 1707 1519 38 11 5 chr4 147181555 147181739 -8448381 + B2_Mm1t SINE B2 1 185 -8 2 1707 2595 144 137 24 chr4 147182478 147182983 -8447137 + LTRIS2 LTR ERV1 3 564 0 2 1707 189 0 0 0 chr4 147184084 147184105 -8446015 + (CTTG)n Simple_repeat Simple_repeat 3 23 0 2 1707 781 81 0 16 chr4 147184921 147185046 -8445074 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2 1707 2004 218 104 71 chr4 147185508 147186264 -8443856 - RLTR40 LTR ERVK -36 781 1 2 1707 216 0 0 0 chr4 147186350 147186374 -8443746 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1707 1223 291 16 6 chr4 147186466 147186829 -8443291 + Lx6 LINE L1 6268 6634 -826 2 1707 1519 84 0 14 chr4 147187191 147187409 -8442711 - L1Md_F2 LINE L1 0 6582 6368 2 1707 3226 97 24 20 chr4 147187726 147188219 -8441901 + Lx LINE L1 6158 6652 -2 2 1707 680 235 48 24 chr4 147188219 147188447 -8441673 + L1MA7 LINE L1 5746 5976 -315 2 1707 1305 86 38 0 chr4 147188489 147188675 -8441445 + B2_Mm1a SINE B2 1 193 0 2 1707 222 61 0 58 chr4 147188786 147188838 -8441282 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1707 543 111 0 0 chr4 147188922 147189003 -8441117 + B2_Mm2 SINE B2 1 81 -114 2 1707 1216 48 7 0 chr4 147189746 147189892 -8440228 - B1_Mus2 SINE Alu 0 147 1 2 1707 230 197 107 53 chr4 147190050 147190125 -8439995 + RLTR25B LTR ERVK 431 509 -519 2 1707 654 88 0 0 chr4 147190069 147190160 -8439960 + B1_Mus2 SINE Alu 49 139 -8 2 1707 1631 31 5 0 chr4 147190220 147190411 -8439709 + B2_Mm1t SINE B2 2 193 0 2 1707 195 69 0 0 chr4 147190415 147190444 -8439676 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1707 1558 234 23 6 chr4 147190446 147190799 -8439321 + MYSERV6-int LTR ERVK 2766 3124 -5835 2 1707 237 62 146 0 chr4 147190799 147190847 -8439273 + B1_Mus1 SINE Alu 2 56 -92 2 1707 313 283 0 0 chr4 147190856 147190948 -8439172 + GA-rich Low_complexity Low_complexity 2 93 0 2 1707 755 55 0 18 chr4 147190953 147191063 -8439057 + B1_Mus2 SINE Alu 40 147 0 2 1707 207 0 0 0 chr4 147191063 147191086 -8439034 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1707 7800 106 14 12 chr4 147191088 147192868 -8437252 + Lx LINE L1 4832 6622 -32 2 213 7274 70 44 15 chr4 147192868 147193861 -8436259 + RLTR13D5 LTR ERVK 1 1022 -1 2 1708 7800 83 15 15 chr4 147193861 147193898 -8436222 + Lx LINE L1 6623 6652 -2 2 1708 1202 48 0 0 chr4 147193901 147194046 -8436074 + B1_Mus1 SINE Alu 1 145 -3 2 1708 468 0 0 0 chr4 147194046 147194098 -8436022 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2 1708 28 29 0 0 chr4 147194114 147194149 -8435971 + AT_rich Low_complexity Low_complexity 1 35 0 2 1708 205 195 0 0 chr4 147194226 147194267 -8435853 + A-rich Low_complexity Low_complexity 1 41 0 2 1708 240 35 0 0 chr4 147194491 147194520 -8435600 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 2 1708 1829 224 128 93 chr4 147194966 147195718 -8434402 - RLTR40 LTR ERVK -39 778 1 2 1708 757 290 31 9 chr4 147196363 147196589 -8433531 + Lx6 LINE L1 6168 6398 -1062 2 1708 1002 53 0 0 chr4 147197350 147197481 -8432639 + B1_Mus2 SINE Alu 10 140 -7 2 1708 614 220 31 41 chr4 147197501 147197695 -8432425 - RLTR22_Mur LTR ERVK -732 1116 925 2 1708 5390 174 19 38 chr4 147197770 147197818 -8432302 + MYSERV6-int LTR ERVK 746 772 -8187 2 1708 1086 104 21 42 chr4 147197818 147198009 -8432111 + B2_Mm2 SINE B2 5 191 -4 2 1708 5390 174 19 38 chr4 147198009 147199034 -8431086 + MYSERV6-int LTR ERVK 773 1798 -7161 2 1708 1188 55 0 0 chr4 147199050 147199196 -8430924 - B1_Mus2 SINE Alu 0 147 2 3 1708 1053 190 49 52 chr4 147199202 147199469 -8430651 + L1_Mur3 LINE L1 3545 3810 -2070 3 1708 359 310 0 19 chr4 147199737 147199898 -8430222 - MMSAT4 Satellite Satellite 0 168 11 3 1708 440 301 40 34 chr4 147199828 147199992 -8430128 - MurSatRep1 Unknown Unknown -88 2049 1828 3 1708 525 259 0 0 chr4 147199992 147200131 -8429989 - MMSAT4 Satellite Satellite 0 168 30 3 1708 440 301 40 34 chr4 147200131 147200191 -8429929 - MurSatRep1 Unknown Unknown -88 1827 1744 3 1708 529 271 8 9 chr4 147200160 147200900 -8429220 - MMSAT4 Satellite Satellite 0 739 1 3 1708 373 329 46 46 chr4 147200659 147200962 -8429158 - MurSatRep1 Unknown Unknown -88 2049 1747 3 1708 269 278 42 42 chr4 147200934 147201054 -8429066 - MMSAT4 Satellite Satellite -18 150 31 3 1708 9438 143 99 94 chr4 147201083 147202245 -8427875 - MurSatRep1 Unknown Unknown -1 2136 1066 3 1708 1165 55 7 7 chr4 147202245 147202392 -8427728 + B1_Mus1 SINE Alu 2 148 0 3 1708 9438 143 99 94 chr4 147202392 147203160 -8426960 - MurSatRep1 Unknown Unknown -1072 1065 352 3 1708 636 81 0 0 chr4 147203160 147203247 -8426873 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1708 9438 143 99 94 chr4 147203247 147203303 -8426817 - MurSatRep1 Unknown Unknown -1786 351 274 3 1708 521 279 0 0 chr4 147203303 147203432 -8426688 + B1F2 SINE Alu 5 133 -16 3 1708 9438 143 99 94 chr4 147203432 147203453 -8426667 - MurSatRep1 Unknown Unknown -1864 273 136 3 1708 180 0 0 0 chr4 147203453 147203473 -8426647 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1708 9438 143 99 94 chr4 147203473 147203589 -8426531 - MurSatRep1 Unknown Unknown -2002 135 2 3 1708 390 248 9 0 chr4 147203685 147203790 -8426330 + B3 SINE B2 2 107 -109 3 1708 680 288 47 13 chr4 147203926 147204162 -8425958 + RLTR16 LTR ERVK 1 244 -261 3 1708 34 20 0 19 chr4 147204472 147204490 -8425630 + AT_rich Low_complexity Low_complexity 1 18 0 3 1708 545 218 48 21 chr4 147204490 147204635 -8425485 + B1_Mur3 SINE Alu 1 149 0 3 1708 34 20 0 19 chr4 147204635 147204668 -8425452 + AT_rich Low_complexity Low_complexity 1 33 0 3 1708 830 69 110 37 chr4 147204737 147204873 -8425247 - B1_Mus2 SINE Alu -1 146 1 3 1708 210 37 0 0 chr4 147205205 147205232 -8424888 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1708 890 35 0 0 chr4 147205233 147205346 -8424774 - B1_Mus1 SINE Alu -13 135 23 3 1708 422 176 35 12 chr4 147205686 147205772 -8424348 + Lx6 LINE L1 2505 2592 -3288 3 1708 854 97 264 0 chr4 147205796 147205940 -8424180 + B2_Mm2 SINE B2 1 182 -13 3 1708 317 127 0 35 chr4 147206013 147206070 -8424050 + B2_Mm2 SINE B2 47 101 -94 3 1708 21 36 0 0 chr4 147206085 147206113 -8424007 + AT_rich Low_complexity Low_complexity 1 28 0 3 1708 5770 190 58 48 chr4 147206114 147207610 -8422510 + Lx6 LINE L1 3640 5149 -731 3 1708 2244 84 68 23 chr4 147207610 147207961 -8422159 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1708 56221 28 9 7 chr4 147207961 147214418 -8415702 - IAPEz-int LTR ERVK 0 6481 8 3 1708 2195 88 72 20 chr4 147214418 147214767 -8415353 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1708 2973 191 38 57 chr4 147214781 147215002 -8415118 + Lx6 LINE L1 5158 5350 -530 3 1708 1178 48 0 0 chr4 147215002 147215147 -8414973 + B1_Mus1 SINE Alu 2 146 -2 3 1708 207 0 0 0 chr4 147215147 147215170 -8414950 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1708 2973 217 37 35 chr4 147215170 147216123 -8413997 + Lx6 LINE L1 5351 6339 -1121 3 1708 235 217 0 0 chr4 147216125 147216171 -8413949 + Lx6 LINE L1 6294 6339 -1121 3 1708 235 217 0 0 chr4 147216173 147216219 -8413901 + Lx6 LINE L1 6294 6339 -1121 3 1708 235 217 0 0 chr4 147216221 147216267 -8413853 + Lx6 LINE L1 6294 6339 -1121 3 1708 235 217 0 0 chr4 147216269 147216315 -8413805 + Lx6 LINE L1 6294 6339 -1121 3 1708 627 298 11 0 chr4 147216317 147216498 -8413622 + Lx6 LINE L1 6294 6476 -984 3 1708 258 273 59 20 chr4 147216738 147216839 -8413281 + L1MA10 LINE L1 6206 6310 -24 3 1708 1214 228 92 45 chr4 147217740 147218162 -8411958 - RMER10A LTR ERVL 0 442 1 3 1708 22 0 0 0 chr4 147218376 147218398 -8411722 + AT_rich Low_complexity Low_complexity 1 22 0 3 1708 1051 110 7 0 chr4 147219073 147219219 -8410901 + B1_Mus1 SINE Alu 2 148 0 3 1708 1446 162 36 39 chr4 147220334 147220668 -8409452 - RMER6B LTR ERVK 0 461 129 3 1708 1091 149 112 5 chr4 147221067 147221290 -8408830 - RMER6A LTR ERVK 0 756 510 3 1708 393 22 0 0 chr4 147221292 147221338 -8408782 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1708 603 27 0 0 chr4 147221460 147221533 -8408587 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1708 891 153 81 41 chr4 147221539 147221736 -8408384 + RMER10B LTR ERVL 194 398 0 3 1708 290 270 45 0 chr4 147222030 147222141 -8407979 + L1MC LINE L1 4967 5082 -1064 3 1708 442 247 11 0 chr4 147223185 147223274 -8406846 + B1_Mur3 SINE Alu 45 134 -15 3 1708 434 260 13 127 chr4 147223817 147223967 -8406153 + B1_Mur3 SINE Alu 1 133 -16 3 1708 420 71 0 0 chr4 147223967 147224023 -8406097 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1708 351 44 0 0 chr4 147224225 147224270 -8405850 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1708 495 214 16 86 chr4 147224271 147224399 -8405721 - B3A SINE B2 -79 119 1 3 1708 500 321 125 13 chr4 147224484 147224811 -8405309 + MLT1B LTR MaLR 21 387 -3 3 1708 268 282 84 0 chr4 147224822 147224893 -8405227 - MER46C DNA MER2_type 0 338 262 3 1708 7520 142 32 14 chr4 147224893 147226120 -8404000 - Lx4A LINE L1 -2 7056 5808 3 1708 852 311 64 3 chr4 147226543 147226840 -8403280 - ORR1D2 LTR MaLR 0 370 56 3 1708 1061 117 117 0 chr4 147226988 147227159 -8402961 + B2_Mm1t SINE B2 2 192 -1 3 1708 598 223 74 0 chr4 147227279 147227400 -8402720 - B3 SINE B2 -86 130 1 3 1708 1244 7 74 0 chr4 147227827 147227976 -8402144 + B2_Mm1a SINE B2 1 160 -33 3 1708 531 0 0 0 chr4 147227976 147228035 -8402085 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 3 1708 4137 72 2 22 chr4 147228128 147228672 -8401448 - L1Md_F2 LINE L1 0 6582 6050 3 1708 231 61 0 0 chr4 147228692 147228725 -8401395 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 1708 1188 50 0 0 chr4 147228727 147228867 -8401253 - B1_Mm SINE Alu -6 141 2 3 1708 1392 79 16 16 chr4 147229421 147229613 -8400507 - B2_Mm1a SINE B2 -1 192 1 3 1708 729 277 16 26 chr4 147229741 147229930 -8400190 + RLTR1D LTR ERV1 60 246 -359 3 1708 1422 237 72 58 chr4 147229930 147230347 -8399773 + RLTR1D LTR ERV1 183 605 0 3 1708 218 405 68 8 chr4 147230362 147230494 -8399626 - RSINE1 SINE B4 -23 142 3 3 1708 1360 106 16 0 chr4 147230654 147230843 -8399277 - B2_Mm2 SINE B2 -2 193 2 3 1708 900 68 8 0 chr4 147231092 147231209 -8398911 + B1_Mus1 SINE Alu 30 147 -1 3 1708 1218 198 86 125 chr4 147231261 147231670 -8398450 + RLTR9C LTR ERVK 1 393 0 3 1708 369 267 103 56 chr4 147231729 147231836 -8398284 + PB1D10 SINE Alu 6 117 0 3 1708 274 278 39 67 chr4 147232218 147232322 -8397798 + PB1D7 SINE Alu 14 114 -6 3 1708 1016 234 19 19 chr4 147232428 147232637 -8397483 - B3 SINE B2 -5 211 3 3 1708 23 0 0 0 chr4 147232649 147232672 -8397448 + AT_rich Low_complexity Low_complexity 1 23 0 3 1708 461 333 41 47 chr4 147232681 147232814 -8397306 - B3A SINE B2 -22 176 42 3 1708 805 257 197 7 chr4 147232814 147233123 -8396997 - ORR1D2 LTR MaLR 0 370 3 3 1708 461 333 41 47 chr4 147233123 147233159 -8396961 - B3A SINE B2 -157 41 8 3 1708 1125 90 7 0 chr4 147233358 147233502 -8396618 + B1_Mus1 SINE Alu 1 145 -3 3 1708 801 0 0 0 chr4 147233502 147233591 -8396529 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1708 2383 33 0 0 chr4 147233787 147234061 -8396059 - L1Md_T LINE L1 0 6582 6309 3 1708 1130 50 0 0 chr4 147234117 147234256 -8395864 - B1_Mus2 SINE Alu 0 147 9 3 1708 227 208 0 20 chr4 147234266 147234315 -8395805 - B4A SINE B4 -243 49 2 3 1708 580 237 17 0 chr4 147234427 147234545 -8395575 + ID_B1 SINE B4 86 205 -19 3 1708 495 262 56 21 chr4 147234545 147234567 -8395553 + B1F SINE Alu 5 149 0 3 1708 1662 21 16 0 chr4 147234681 147234870 -8395250 + B2_Mm1a SINE B2 2 193 0 3 1708 260 200 0 0 chr4 147237500 147237550 -8392570 - ID_B1 SINE B4 -2 222 173 3 1708 315 227 80 0 chr4 147237511 147237586 -8392534 - PB1D10 SINE Alu -13 104 24 3 1708 185 245 119 64 chr4 147237865 147237974 -8392146 - L2a LINE L2 -376 3050 2936 3 1708 365 268 27 29 chr4 147238328 147238448 -8391672 + B1_Mur2 SINE Alu 9 125 -25 3 1708 1261 48 0 0 chr4 147238448 147238595 -8391525 + B1_Mm SINE Alu 1 147 0 3 1708 326 273 80 32 chr4 147238595 147238610 -8391510 + B1_Mur4 SINE Alu 126 149 -1 3 1708 582 221 2 18 chr4 147238644 147238791 -8391329 + B1_Mus2 SINE Alu 6 150 0 3 1708 551 225 57 156 chr4 147238792 147239003 -8391117 + B3 SINE B2 27 216 0 3 1708 740 244 24 42 chr4 147240700 147240867 -8389253 + RSINE1 SINE B4 2 165 0 3 1708 794 74 0 24 chr4 147240955 147241079 -8389041 - MURVY-LTR LTR ERV1 -135 384 264 3 1708 253 86 0 33 chr4 147241085 147241145 -8388975 - MURVY-LTR LTR ERV1 -200 319 262 3 1708 2537 37 15 6 chr4 147241151 147241475 -8388645 - MURVY-LTR LTR ERV1 -192 327 1 3 1708 222 37 0 0 chr4 147241565 147241592 -8388528 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 1708 285 253 11 57 chr4 147241607 147241695 -8388425 - MIRc SINE MIR -169 99 16 3 1708 307 274 48 64 chr4 147241893 147242018 -8388102 + RMER15 LTR ERVL 441 563 -12 3 1708 330 26 0 0 chr4 147242110 147242149 -8387971 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1708 645 74 209 18 chr4 147242166 147242276 -8387844 - B2_Mm2 SINE B2 -60 135 5 3 1708 1394 308 41 36 chr4 147243062 147243669 -8386451 + ERVL-B4-int LTR ERVL 20 629 -5085 3 1708 1303 298 19 26 chr4 147243846 147244384 -8385736 + ERVL-B4-int LTR ERVL 988 1521 -4240 3 1708 730 273 127 21 chr4 147244550 147244834 -8385286 + RMER15-int LTR ERVL 4191 4504 -495 3 1708 676 270 20 39 chr4 147244860 147245064 -8385056 + RLTR11B LTR ERVK 2 201 -252 3 1708 3798 167 46 13 chr4 147245090 147245916 -8384204 + MYSERV-int LTR ERVK 5698 6550 0 3 1708 482 246 23 45 chr4 147245921 147246053 -8384067 + RLTR11B LTR ERVK 6 134 -319 3 1708 1312 81 35 0 chr4 147246053 147246226 -8383894 + B2_Mm1t SINE B2 1 179 -14 3 1708 960 71 55 34 chr4 147246256 147246402 -8383718 + B2_Mm2 SINE B2 47 195 0 3 1708 285 312 69 98 chr4 147247175 147247349 -8382771 + RMER2 LTR ERV1 334 502 -65 3 1708 525 218 0 0 chr4 147249732 147249833 -8380287 - PB1D7 SINE Alu -11 109 9 3 1708 343 237 190 49 chr4 147249833 147249874 -8380246 - ID_B1 SINE B4 -11 213 52 4 1708 735 208 21 7 chr4 147250579 147250724 -8379396 + B1_Mur1 SINE Alu 3 149 0 4 1708 185 296 161 36 chr4 147251393 147251505 -8378615 + MIRm SINE MIR 9 134 -142 4 1708 437 0 19 0 chr4 147251514 147251567 -8378553 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1708 374 208 14 0 chr4 147251573 147251645 -8378475 - ID SINE ID -151 73 1 4 1708 456 258 9 34 chr4 147251726 147251855 -8378265 + B1F SINE Alu 1 128 -21 4 1708 371 351 92 12 chr4 147251971 147252073 -8378047 - HAL1-3A_ME LINE L1 -386 2472 2355 4 1708 1188 75 0 0 chr4 147252073 147252220 -8377900 - B1_Mus2 SINE Alu 0 147 1 4 1708 371 351 92 12 chr4 147252220 147252290 -8377830 - HAL1-3A_ME LINE L1 -504 2354 2286 4 1708 324 161 0 0 chr4 147252300 147252362 -8377758 + CT-rich Low_complexity Low_complexity 4 65 0 4 1708 963 211 82 19 chr4 147252374 147252582 -8377538 - ID_B1 SINE B4 -3 221 1 4 1708 330 216 27 0 chr4 147253194 147253268 -8376852 - ID4 SINE ID -2 81 6 4 1708 432 224 18 0 chr4 147254457 147254622 -8375498 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1708 578 198 23 0 chr4 147254639 147254811 -8375309 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1708 239 140 20 0 chr4 147254828 147254878 -8375242 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1708 527 201 24 0 chr4 147254894 147255058 -8375062 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1708 215 203 17 0 chr4 147255075 147255134 -8374986 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1708 554 219 21 0 chr4 147255151 147255389 -8374731 + (TG)n Simple_repeat Simple_repeat 1 242 0 4 1708 330 274 45 179 chr4 147255405 147255561 -8374559 - B4A SINE B4 -1 291 157 4 1708 248 204 41 0 chr4 147255560 147255609 -8374511 - B3A SINE B2 -147 51 1 4 1708 667 304 75 35 chr4 147255661 147255862 -8374258 - B3 SINE B2 -6 210 2 4 1708 426 149 0 0 chr4 147255879 147255946 -8374174 - B1_Mur4 SINE Alu -82 68 2 4 1708 228 206 0 150 chr4 147255881 147255961 -8374159 - MT2B LTR ERVL -379 222 155 4 1708 422 271 16 56 chr4 147256818 147256943 -8373177 - B3A SINE B2 -63 135 16 4 1708 399 240 97 67 chr4 147258069 147258203 -8371917 + RSINE1 SINE B4 6 143 -22 4 1708 743 258 40 67 chr4 147258735 147258959 -8371161 - ID_B1 SINE B4 0 224 7 4 1708 644 187 40 8 chr4 147258983 147259107 -8371013 + B1_Mur1 SINE Alu 22 149 0 4 1708 252 59 0 0 chr4 147259125 147259159 -8370961 + (CATA)n Simple_repeat Simple_repeat 1 34 0 4 1708 272 250 0 27 chr4 147259214 147259288 -8370832 + PB1D10 SINE Alu 46 117 0 4 1708 1125 220 60 60 chr4 147259923 147260257 -8369863 - MTEa LTR MaLR -9 370 37 4 1708 967 63 0 0 chr4 147260875 147261001 -8369119 + B1_Mm SINE Alu 1 126 -21 4 1708 523 176 42 0 chr4 147261814 147261922 -8368198 - B1_Mus1 SINE Alu -19 128 2 4 1708 381 43 0 0 chr4 147262141 147262188 -8367932 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1708 1114 52 0 22 chr4 147262961 147263100 -8367020 + B1_Mus1 SINE Alu 2 137 -11 4 1708 252 0 0 0 chr4 147263100 147263128 -8366992 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1708 180 0 0 0 chr4 147263128 147263148 -8366972 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1708 1037 201 39 20 chr4 147263156 147263359 -8366761 + B3 SINE B2 2 208 -8 4 1708 496 253 52 0 chr4 147263391 147263518 -8366602 - B3A SINE B2 -44 172 35 4 1708 1446 58 10 20 chr4 147263570 147263765 -8366355 + B2_Mm1t SINE B2 1 193 0 4 1708 324 274 24 89 chr4 147265228 147265246 -8364874 - PB1D10 SINE Alu 0 117 3 4 1708 474 243 48 19 chr4 147265246 147265351 -8364769 - ID_B1 SINE B4 -33 191 84 4 1708 1264 137 28 5 chr4 147265568 147265780 -8364340 - URR1B DNA MER1_type 0 225 9 4 1708 484 324 80 29 chr4 147265772 147265947 -8364173 + B3A SINE B2 14 197 -1 4 1708 402 212 159 7 chr4 147265965 147266103 -8364017 + L1MB3 LINE L1 5261 5419 -761 4 1708 295 289 209 8 chr4 147266304 147266536 -8363584 + L1MB3 LINE L1 5556 5821 -350 4 1708 527 231 136 70 chr4 147266536 147266764 -8363356 + B4A SINE B4 50 292 0 4 1708 246 32 0 0 chr4 147266796 147266827 -8363293 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1708 380 80 0 0 chr4 147266849 147266899 -8363221 + HAL1-3A_ME LINE L1 1975 2024 -834 4 1708 240 250 48 36 chr4 147266899 147266982 -8363138 + L1MB3 LINE L1 5825 5908 -275 4 1708 530 246 20 16 chr4 147266982 147267108 -8363012 + B1_Mur2 SINE Alu 2 147 -2 4 1708 229 152 65 0 chr4 147267116 147267162 -8362958 + L1MB3 LINE L1 5902 5950 -233 4 1708 216 264 0 77 chr4 147267184 147267262 -8362858 + B1F SINE Alu 9 80 -69 4 1708 1455 48 5 36 chr4 147267508 147267701 -8362419 + B2_Mm1a SINE B2 2 188 -5 4 1708 405 0 0 0 chr4 147268148 147268193 -8361927 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 4 1708 419 214 102 0 chr4 147268193 147268291 -8361829 + RSINE1 SINE B4 22 129 -36 4 1708 25 51 0 0 chr4 147268301 147268340 -8361780 + AT_rich Low_complexity Low_complexity 1 39 0 4 1708 1052 75 15 0 chr4 147268342 147268475 -8361645 + B1_Mm SINE Alu 1 135 -12 4 1708 246 32 0 0 chr4 147268477 147268508 -8361612 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1708 22 0 0 0 chr4 147269105 147269127 -8360993 + AT_rich Low_complexity Low_complexity 1 22 0 4 1708 653 162 120 0 chr4 147269127 147269244 -8360876 - B2_Mm2 SINE B2 -64 131 1 4 1708 450 277 17 122 chr4 147269282 147269463 -8360657 - RSINE1 SINE B4 0 165 4 4 1708 549 0 0 0 chr4 147269486 147269547 -8360573 + (TATG)n Simple_repeat Simple_repeat 4 64 0 4 1708 856 250 46 0 chr4 147269556 147269752 -8360368 - B3 SINE B2 -11 205 1 4 1708 188 308 46 0 chr4 147269775 147269840 -8360280 - MIR SINE MIR -10 252 185 4 1708 513 254 68 53 chr4 147269850 147269983 -8360137 - RSINE1 SINE B4 -28 137 3 4 1708 576 247 101 12 chr4 147271883 147272051 -8358069 - ID_B1 SINE B4 -6 218 36 4 1708 725 137 77 0 chr4 147272132 147272249 -8357871 + B1_Mus1 SINE Alu 11 136 -12 4 1708 754 153 48 55 chr4 147272252 147272380 -8357740 + B1_Mur3 SINE Alu 3 136 -13 4 1708 291 28 0 0 chr4 147272380 147272416 -8357704 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1708 754 153 48 55 chr4 147272416 147272432 -8357688 + B1_Mur3 SINE Alu 137 146 -3 4 1708 647 261 14 11 chr4 147273303 147273458 -8356662 + ID_B1 SINE B4 77 226 -66 4 1708 272 234 31 0 chr4 147274171 147274235 -8355885 - ID_B1 SINE B4 -68 156 91 4 1708 1731 16 0 0 chr4 147275527 147275718 -8354402 + B2_Mm1a SINE B2 2 192 -1 4 1708 1146 22 7 0 chr4 147275923 147276062 -8354058 - B1_Mm SINE Alu -1 146 7 4 1708 365 203 0 0 chr4 147276278 147276321 -8353799 + ID_B1 SINE B4 86 128 -96 4 1708 422 276 91 38 chr4 147276321 147276453 -8353667 + RSINE1 SINE B4 2 140 -25 4 1708 192 77 0 0 chr4 147276453 147276479 -8353641 + (CACG)n Simple_repeat Simple_repeat 2 27 0 4 1708 346 247 21 43 chr4 147276505 147276598 -8353522 + ID_B1 SINE B4 130 220 -4 4 1708 661 169 138 0 chr4 147276650 147276780 -8353340 + B1_Mus1 SINE Alu 1 148 0 4 1708 227 296 0 0 chr4 147279115 147279186 -8350934 + G-rich Low_complexity Low_complexity 5 75 0 4 1708 273 327 19 37 chr4 147279574 147279682 -8350438 + MER3 DNA MER1_type 32 137 -72 4 1708 362 228 71 58 chr4 147279677 147279831 -8350289 + MER33 DNA MER1_type 116 271 -53 4 1708 618 258 0 19 chr4 147279843 147279997 -8350123 + RSINE1 SINE B4 12 162 -3 4 1708 561 212 127 6 chr4 147280030 147280187 -8349933 + B3 SINE B2 40 215 -1 4 1708 380 302 8 25 chr4 147280262 147280381 -8349739 - PB1D10 SINE Alu 0 117 1 4 1708 483 218 54 9 chr4 147281086 147281197 -8348923 + PB1D7 SINE Alu 5 120 0 4 1708 323 303 67 27 chr4 147281245 147281394 -8348726 - RSINE1 SINE B4 -9 156 2 4 1708 1097 259 52 82 chr4 147281483 147281702 -8348418 + MTD LTR MaLR 1 210 -209 4 1708 852 141 0 53 chr4 147281702 147281852 -8348268 + B1_Mus2 SINE Alu 1 142 -5 4 1708 1097 259 52 82 chr4 147281852 147281875 -8348245 + MTD LTR MaLR 211 222 -197 4 1708 1006 67 97 0 chr4 147281875 147282009 -8348111 + B1_Mus1 SINE Alu 2 148 0 4 1708 1097 259 52 82 chr4 147282009 147282021 -8348099 + MTD LTR MaLR 223 233 -186 4 1708 441 0 0 0 chr4 147282021 147282070 -8348050 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1708 603 27 0 0 chr4 147282070 147282142 -8347978 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1708 1097 259 52 82 chr4 147282142 147282287 -8347833 + MTD LTR MaLR 234 390 -29 4 1708 263 324 73 18 chr4 147282362 147282472 -8347648 + MLT1A LTR MaLR 82 197 -177 4 1708 341 225 14 0 chr4 147282555 147282626 -8347494 - ID_B1 SINE B4 -75 149 78 4 1708 227 271 698 8 chr4 147282637 147282756 -8347364 - RMER30 DNA MER1_type 0 202 2 4 1708 464 207 41 8 chr4 147282824 147282946 -8347174 + B1F SINE Alu 18 143 -6 4 1708 385 314 114 49 chr4 147283187 147283371 -8346749 - MER20 DNA MER1_type 0 219 24 4 1708 285 244 43 22 chr4 147283722 147283814 -8346306 + B1F1 SINE Alu 1 94 -55 4 1708 671 192 0 0 chr4 147285283 147285403 -8344717 + ID_B1 SINE B4 102 221 -3 4 1708 210 288 53 40 chr4 147285453 147285529 -8344591 + ID2 SINE ID 7 83 0 4 1708 316 302 59 17 chr4 147285568 147285686 -8344434 - MER20 DNA MER1_type -91 128 6 4 1708 593 214 0 17 chr4 147285729 147285848 -8344272 - B1_Mur2 SINE Alu -1 148 32 4 1708 802 147 7 35 chr4 147286109 147286250 -8343870 + B1_Mur3 SINE Alu 9 145 -4 4 1708 1685 16 0 21 chr4 147286375 147286568 -8343552 + B2_Mm1a SINE B2 2 190 -3 4 1708 764 229 13 0 chr4 147286576 147286729 -8343391 - ID_B1 SINE B4 -24 200 46 4 1708 499 267 19 39 chr4 147287793 147287927 -8342193 + B3 SINE B2 39 169 -47 4 1708 2005 124 11 90 chr4 147287927 147288227 -8341893 + ORR1A3 LTR MaLR 1 282 -44 4 1708 1501 63 11 0 chr4 147288227 147288417 -8341703 + B2_Mm1t SINE B2 2 193 0 4 1708 2005 124 11 90 chr4 147288417 147288470 -8341650 + ORR1A3 LTR MaLR 283 326 0 4 1708 499 267 19 39 chr4 147288470 147288491 -8341629 + B3 SINE B2 170 190 -26 4 1708 533 218 0 0 chr4 147288484 147288585 -8341535 + B1F SINE Alu 47 147 -2 4 1708 736 200 161 5 chr4 147288772 147288958 -8341162 + B3 SINE B2 2 216 0 4 1708 439 313 0 32 chr4 147289010 147289165 -8340955 + ID_B1 SINE B4 75 224 0 4 1708 453 265 22 22 chr4 147289027 147289166 -8340954 + B1F SINE Alu 11 149 0 4 1708 513 228 35 2 chr4 147289183 147289311 -8340809 + PB1D7 SINE Alu 6 147 0 5 1708 569 122 159 8 chr4 147289311 147289443 -8340677 + RMER17B LTR ERVK 312 463 -495 5 1708 392 42 42 14 chr4 147289443 147289473 -8340647 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1708 1215 41 21 0 chr4 147289473 147289618 -8340502 + B1_Mus1 SINE Alu 1 148 0 5 1708 392 42 42 14 chr4 147289618 147289659 -8340461 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1708 275 242 45 15 chr4 147289674 147289741 -8340379 + ID4_ SINE ID 2 70 -13 5 1708 207 0 0 0 chr4 147289742 147289765 -8340355 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 1708 532 248 203 22 chr4 147290068 147290295 -8339825 + MLT1E1A LTR MaLR 7 274 -406 5 1708 624 296 15 15 chr4 147290282 147290481 -8339639 + MLT1E1A LTR MaLR 429 627 -53 5 1708 265 333 14 0 chr4 147290487 147290559 -8339561 - ID4_ SINE ID 0 83 11 5 1708 369 109 0 0 chr4 147291034 147291089 -8339031 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 5 1708 1398 60 71 0 chr4 147291094 147291276 -8338844 - B2_Mm2 SINE B2 0 195 1 5 1708 1151 59 0 0 chr4 147291887 147292040 -8338080 + MTB LTR MaLR 1 153 -247 5 1708 288 111 0 0 chr4 147292109 147292154 -8337966 + (CAGA)n Simple_repeat Simple_repeat 1 45 0 5 1708 261 246 0 0 chr4 147293225 147293286 -8336834 - ID4_ SINE ID -1 82 22 5 1708 261 198 83 19 chr4 147293493 147293601 -8336519 + RLTR40 LTR ERVK 557 671 -146 5 1708 402 191 0 0 chr4 147293605 147293731 -8336389 + (CA)n Simple_repeat Simple_repeat 1 126 0 5 1708 324 344 109 0 chr4 147293731 147293776 -8336344 + HAL1-3A_ME LINE L1 1975 2020 -838 5 1708 1131 75 7 0 chr4 147293776 147293923 -8336197 + B1_Mus1 SINE Alu 1 148 0 5 1708 324 344 109 0 chr4 147293923 147294005 -8336115 + HAL1-3A_ME LINE L1 2021 2115 -743 5 1708 375 180 2 2 chr4 147294107 147294181 -8335939 + B1F1 SINE Alu 1 73 -222 5 1708 319 265 0 0 chr4 147294519 147294587 -8335533 + PB1D10 SINE Alu 1 68 -49 5 1708 637 287 0 37 chr4 147294678 147294841 -8335279 - RSINE1 SINE B4 -6 159 3 5 1708 605 245 63 70 chr4 147295945 147296164 -8333956 + ID_B1 SINE B4 23 222 -2 5 1708 579 280 92 110 chr4 147296259 147296532 -8333588 + MER58B DNA MER1_type 72 339 -2 5 1708 718 256 120 5 chr4 147296557 147296757 -8333363 - ID_B1 SINE B4 0 224 2 5 1708 249 312 0 36 chr4 147296822 147296905 -8333215 - RSINE1 SINE B4 -11 154 75 5 1708 1144 218 90 96 chr4 147298187 147298552 -8331568 + ORR1D1 LTR MaLR 11 373 -1 5 1708 625 223 10 142 chr4 147298638 147298682 -8331438 + B3 SINE B2 2 40 -176 5 1708 991 133 0 0 chr4 147298682 147298817 -8331303 + B1_Mus2 SINE Alu 1 135 -12 5 1708 906 116 0 0 chr4 147298820 147298958 -8331162 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 5 1708 796 223 9 131 chr4 147298958 147299135 -8330985 + B3A SINE B2 31 196 -2 5 1708 329 207 0 112 chr4 147299193 147299291 -8330829 - PB1D10 SINE Alu 0 117 31 5 1708 359 333 33 33 chr4 147299312 147299495 -8330625 - MIR SINE MIR -42 220 38 5 1708 290 173 58 0 chr4 147300575 147300627 -8329493 - ID_B1 SINE B4 -29 195 141 5 1708 252 143 0 0 chr4 147301295 147301337 -8328783 + MIR SINE MIR 98 139 -69 5 1708 341 312 104 99 chr4 147301342 147301383 -8328737 - B2_Mm2 SINE B2 0 195 160 5 1708 237 128 0 0 chr4 147301383 147301430 -8328690 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 1708 672 230 90 3 chr4 147301430 147301580 -8328540 - B3A SINE B2 -38 160 3 5 1708 410 238 65 19 chr4 147301588 147301695 -8328425 + MT2B LTR ERVL 153 264 -337 5 1708 582 192 92 0 chr4 147301609 147301729 -8328391 + B1_Mus2 SINE Alu 17 147 0 5 1708 230 289 8 69 chr4 147302376 147302506 -8327614 + C-rich Low_complexity Low_complexity 5 126 0 5 1708 196 273 86 54 chr4 147302873 147302966 -8327154 - MIR SINE MIR -21 241 146 5 1708 1386 88 16 0 chr4 147303006 147303188 -8326932 + B2_Mm2 SINE B2 5 189 -6 5 1708 232 301 11 78 chr4 147303195 147303285 -8326835 - PB1D10 SINE Alu -7 110 27 5 1708 255 228 63 0 chr4 147303293 147303372 -8326748 - B3 SINE B2 0 216 133 5 1708 326 250 26 0 chr4 147303462 147303538 -8326582 + MLT1A0 LTR MaLR 288 365 0 5 1708 420 20 0 0 chr4 147304166 147304215 -8325905 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1708 621 257 76 24 chr4 147304403 147304614 -8325506 - ID_B1 SINE B4 0 224 3 5 1708 434 265 29 0 chr4 147304653 147304823 -8325297 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 1708 614 272 25 6 chr4 147304824 147304845 -8325275 - RSINE1 SINE B4 0 165 145 5 1708 258 32 0 0 chr4 147304845 147304876 -8325244 + (TGAG)n Simple_repeat Simple_repeat 4 34 0 5 1708 614 272 25 6 chr4 147304876 147305013 -8325107 - RSINE1 SINE B4 -21 144 5 5 1708 183 80 0 0 chr4 147306377 147306402 -8323718 + (AGGTG)n Simple_repeat Simple_repeat 3 27 0 5 1708 318 300 22 44 chr4 147307484 147307620 -8322500 - ID_B1 SINE B4 -8 216 84 5 1708 307 339 118 0 chr4 147307806 147307933 -8322187 + MIR SINE MIR 35 176 -86 5 1708 591 153 0 59 chr4 147308717 147308835 -8321285 - B1_Mur4 SINE Alu -33 117 7 5 1708 183 42 0 0 chr4 147309620 147309644 -8320476 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1708 225 154 0 0 chr4 147309932 147309971 -8320149 + T-rich Low_complexity Low_complexity 1 39 0 5 1708 954 244 14 9 chr4 147309974 147310189 -8319931 - ID_B1 SINE B4 0 224 9 5 1708 380 258 7 0 chr4 147311260 147311411 -8318709 + (TGGA)n Simple_repeat Simple_repeat 3 154 0 5 1708 280 290 65 0 chr4 147311788 147311881 -8318239 + PB1D10 SINE Alu 5 103 -14 5 1708 346 237 46 102 chr4 147311912 147312020 -8318100 + ID_B1 SINE B4 104 205 -19 5 1708 249 119 24 0 chr4 147313142 147313184 -8316936 + B3 SINE B2 1 43 -173 5 1708 488 247 0 0 chr4 147313253 147313350 -8316770 - RSINE1 SINE B4 -61 104 8 5 1708 432 280 17 8 chr4 147313451 147313570 -8316550 - PB1D9 SINE Alu 0 120 1 5 1708 183 80 0 0 chr4 147313594 147313619 -8316501 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 5 1708 995 103 139 0 chr4 147313622 147313787 -8316333 - B2_Mm2 SINE B2 -6 189 2 5 1708 865 169 35 0 chr4 147313789 147313931 -8316189 - B1_Mus1 SINE Alu -1 147 1 5 1708 335 252 28 55 chr4 147313981 147314090 -8316030 + PB1 SINE Alu 19 124 -3 5 1708 245 230 0 13 chr4 147314585 147314660 -8315460 + CT-rich Low_complexity Low_complexity 1 74 0 5 1708 27 0 0 0 chr4 147315245 147315272 -8314848 + GC_rich Low_complexity Low_complexity 1 27 0 5 1708 365 167 0 0 chr4 147316878 147316944 -8313176 + B1_Mur4 SINE Alu 2 67 -83 5 1708 259 224 17 0 chr4 147316968 147317026 -8313094 - RLTR25B LTR ERVK -529 499 441 5 1708 694 44 0 0 chr4 147316975 147317066 -8313054 - B1_Mus1 SINE Alu -57 91 1 5 1708 677 247 128 5 chr4 147317871 147318058 -8312062 + B3 SINE B2 1 210 -6 5 1708 917 282 112 20 chr4 147318209 147318568 -8311552 - MTE2a LTR MaLR -2 417 1 5 1708 240 244 196 22 chr4 147319743 147319835 -8310285 + PB1D10 SINE Alu 9 116 -1 5 1708 392 211 159 24 chr4 147320505 147320631 -8309489 - ID_B1 SINE B4 0 224 82 5 1708 1922 242 120 88 chr4 147321964 147323171 -8306949 + RLTR22_Mus LTR ERVK 2 1420 -388 5 1708 1138 72 0 0 chr4 147323171 147323309 -8306811 + B1_Mus1 SINE Alu 1 138 -10 5 1708 1922 276 95 87 chr4 147323309 147323678 -8306442 + RLTR22_Mus LTR ERVK 963 1590 -218 5 1708 558 0 0 0 chr4 147323681 147323743 -8306377 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1708 405 127 0 0 chr4 147323743 147323822 -8306298 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 1708 362 272 33 0 chr4 147323930 147324034 -8306086 + ID_B1 SINE B4 87 188 -36 5 1708 320 221 35 96 chr4 147324261 147324376 -8305744 + B1F SINE Alu 16 123 -26 5 1708 621 0 0 0 chr4 147324629 147324698 -8305422 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 5 1708 874 45 0 0 chr4 147324698 147324808 -8305312 - B2_Mm1t SINE B2 -33 160 51 5 213 826 106 7 90 chr4 147324869 147325014 -8305106 + B1_Mus1 SINE Alu 3 135 -13 5 1709 518 295 103 37 chr4 147325325 147325596 -8304524 - B4A SINE B4 -2 290 2 5 1709 421 252 171 0 chr4 147325615 147325738 -8304382 - ID_B1 SINE B4 0 224 81 5 1709 717 253 34 22 chr4 147325789 147325802 -8304318 - B3A SINE B2 -16 182 170 5 1709 333 0 0 0 chr4 147325802 147325839 -8304281 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1709 717 253 34 22 chr4 147325839 147326003 -8304117 - B3A SINE B2 -29 169 4 5 1709 228 35 0 0 chr4 147326031 147326060 -8304060 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1709 317 125 9 35 chr4 147326701 147326767 -8303353 - B2_Mm2 SINE B2 -102 114 47 5 1709 1109 115 79 0 chr4 147326824 147326989 -8303131 - B2_Mm1t SINE B2 -14 179 2 5 1709 347 295 26 9 chr4 147327105 147327218 -8302902 + Charlie4a DNA MER1_type 7 121 -387 5 1709 419 260 73 51 chr4 147327331 147327540 -8302580 - B3 SINE B2 -4 212 3 5 1709 1109 88 0 7 chr4 147327556 147327704 -8302416 - B1_Mus1 SINE Alu 0 148 2 5 1709 670 264 145 13 chr4 147327733 147327967 -8302153 + ORR1D1 LTR MaLR 2 266 -108 5 1709 726 129 32 0 chr4 147327989 147328113 -8302007 - B1_Mur3 SINE Alu -3 146 19 5 1709 351 292 21 42 chr4 147327991 147328134 -8301986 - ID_B1 SINE B4 -5 219 80 5 1709 1148 43 43 0 chr4 147328320 147328461 -8301659 + B1_Mus2 SINE Alu 1 147 0 5 1709 427 254 40 6 chr4 147328608 147328782 -8301338 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1709 304 279 25 19 chr4 147328729 147328890 -8301230 + (TATG)n Simple_repeat Simple_repeat 4 165 0 5 1709 555 200 22 11 chr4 147328898 147329454 -8300666 + (TG)n Simple_repeat Simple_repeat 1 562 0 5 1709 762 216 62 34 chr4 147329466 147329643 -8300477 - B3A SINE B2 -16 182 1 6 1709 363 198 36 36 chr4 147329729 147329813 -8300307 - RSINE1 SINE B4 0 165 82 6 1709 400 220 114 0 chr4 147329888 147329985 -8300135 - B1F1 SINE Alu -9 111 1 6 1709 500 257 18 0 chr4 147330002 147330115 -8300005 - PB1D7 SINE Alu -1 119 5 6 1709 633 27 0 0 chr4 147330140 147330215 -8299905 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 6 1709 547 158 11 0 chr4 147330244 147330339 -8299781 - B2_Mm2 SINE B2 -66 129 34 6 1709 1175 51 0 0 chr4 147330339 147330476 -8299644 + B1_Mm SINE Alu 1 137 -10 6 1709 237 33 0 0 chr4 147330476 147330506 -8299614 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1709 508 103 535 8 chr4 147330921 147331048 -8299072 - B2_Mm2 SINE B2 0 195 2 6 1709 452 237 162 21 chr4 147332074 147332216 -8297904 - MLT1K LTR MaLR -34 561 400 6 1709 360 0 0 0 chr4 147332426 147332466 -8297654 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1709 618 210 0 8 chr4 147332468 147332588 -8297532 - B1_Mur4 SINE Alu -8 142 24 6 1709 1023 221 26 26 chr4 147332571 147332840 -8297280 - RMER19C LTR ERVK -342 269 1 6 1709 342 156 16 0 chr4 147332840 147332902 -8297218 - B1_Mur4 SINE Alu -86 64 2 6 1709 768 221 29 40 chr4 147332903 147333077 -8297043 - B3 SINE B2 -17 199 28 6 1709 946 289 47 104 chr4 147333127 147333529 -8296591 + MTE2a LTR MaLR 1 379 0 6 1709 300 246 14 0 chr4 147333529 147333585 -8296535 - ID SINE ID -167 57 1 6 1709 890 193 82 6 chr4 147333747 147333929 -8296191 - B3 SINE B2 0 216 21 6 1709 599 222 52 7 chr4 147333928 147334064 -8296056 + B3 SINE B2 75 216 0 6 1709 185 224 41 0 chr4 147334159 147334208 -8295912 - MIR SINE MIR -90 172 122 6 1709 294 164 0 0 chr4 147334210 147334265 -8295855 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 6 1709 224 311 105 16 chr4 147335143 147335267 -8294853 + MIR3 SINE MIR 2 136 -72 6 1709 806 272 10 5 chr4 147335371 147335574 -8294546 - ID_B1 SINE B4 -19 205 2 6 1709 270 0 0 0 chr4 147335593 147335623 -8294497 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1709 1135 84 0 0 chr4 147335626 147335781 -8294339 - B2_Mm2 SINE B2 -38 157 3 6 1709 245 316 0 0 chr4 147336861 147336940 -8293180 + ID4_ SINE ID 2 80 -3 6 1709 487 193 50 236 chr4 147338627 147338746 -8291374 + B3 SINE B2 5 93 -123 6 1709 1237 34 0 0 chr4 147338746 147338894 -8291226 - B1_Mus1 SINE Alu 0 148 1 6 1709 1202 86 0 5 chr4 147338895 147339105 -8291015 + (TTTTC)n Simple_repeat Simple_repeat 1 209 0 6 1709 487 193 50 236 chr4 147339105 147339240 -8290880 + B3 SINE B2 94 213 -3 6 1709 832 240 65 28 chr4 147340373 147340587 -8289533 + ID_B1 SINE B4 1 222 -2 6 1709 305 345 40 27 chr4 147340596 147340754 -8289366 - MIRc SINE MIR -110 166 1 6 1709 969 172 90 10 chr4 147341235 147341435 -8288685 - B3 SINE B2 0 216 1 6 1709 393 300 15 15 chr4 147341435 147341560 -8288560 - ID_B1 SINE B4 -6 218 93 6 1709 203 133 0 0 chr4 147341606 147341636 -8288484 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 6 1709 742 281 109 8 chr4 147341658 147341906 -8288214 - B4A SINE B4 -18 274 2 6 1709 513 0 56 0 chr4 147341935 147342007 -8288113 + (GTTTG)n Simple_repeat Simple_repeat 4 79 0 6 1709 449 304 19 12 chr4 147343163 147343323 -8286797 - MER20 DNA MER1_type -1 218 58 6 1709 419 212 151 50 chr4 147343980 147344099 -8286021 + ID_B1 SINE B4 81 211 -13 6 1709 201 74 0 0 chr4 147344101 147344128 -8285992 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1709 423 0 0 0 chr4 147344306 147344353 -8285767 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1709 367 287 10 10 chr4 147344486 147344588 -8285532 - PB1D7 SINE Alu -1 119 18 6 1709 2509 194 125 84 chr4 147344673 147344901 -8285219 + RLTR40 LTR ERVK 3 247 -570 6 1709 1220 102 6 11 chr4 147344901 147345080 -8285040 - B2_Mm2 SINE B2 -16 179 2 6 1709 2509 194 125 84 chr4 147345080 147345603 -8284517 + RLTR40 LTR ERVK 248 785 -32 6 1709 696 233 40 216 chr4 147345891 147345956 -8284164 - ORR1D1 LTR MaLR 0 384 325 6 1709 1030 121 0 0 chr4 147345956 147346105 -8284015 + B1_Mur4 SINE Alu 1 149 -1 6 1709 288 0 0 0 chr4 147346112 147346144 -8283976 + (GGA)n Simple_repeat Simple_repeat 3 34 0 6 1709 696 233 40 216 chr4 147346144 147346189 -8283931 - ORR1D1 LTR MaLR -60 324 311 6 1709 1096 106 0 11 chr4 147346189 147346370 -8283750 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 6 1709 822 233 40 216 chr4 147346370 147346538 -8283582 - ORR1D1 LTR MaLR -74 310 175 6 1709 188 0 74 0 chr4 147346538 147346565 -8283555 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 6 1709 822 236 44 58 chr4 147346565 147346697 -8283423 - ORR1D1 LTR MaLR -200 174 39 6 1709 243 236 352 35 chr4 147346699 147346785 -8283335 - ORR1D1-int LTR MaLR -3 1506 1373 6 1709 465 19 0 0 chr4 147346785 147346839 -8283281 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6 1709 243 236 352 35 chr4 147346839 147346897 -8283223 - ORR1D1-int LTR MaLR -137 1372 1316 6 1709 1264 50 0 0 chr4 147346897 147346999 -8283121 - B2_Mm1t SINE B2 -33 160 1 6 1709 5284 189 55 48 chr4 147346998 147347009 -8283111 - ORR1D1-int LTR MaLR -124 1246 1235 6 1709 682 175 41 27 chr4 147347009 147347156 -8282964 - B1_Mur2 SINE Alu 0 149 1 6 1709 5284 189 55 48 chr4 147347156 147347876 -8282244 - ORR1D1-int LTR MaLR -136 1234 486 6 1709 1251 115 11 0 chr4 147347876 147348067 -8282053 - B2_Mm1t SINE B2 0 193 1 6 1709 5284 189 55 48 chr4 147348067 147348422 -8281698 - ORR1D1-int LTR MaLR -885 485 141 6 1709 1104 88 0 0 chr4 147348422 147348569 -8281551 + B1_Mm SINE Alu 1 147 0 6 1709 894 99 166 6 chr4 147348578 147348741 -8281379 + B2_Mm1t SINE B2 1 189 -4 6 1709 5284 189 55 48 chr4 147348741 147348879 -8281241 - ORR1D1-int LTR MaLR -1230 140 2 6 1709 243 150 0 0 chr4 147348877 147348917 -8281203 - ORR1D1 LTR MaLR -2 382 343 6 1709 814 185 64 0 chr4 147348903 147349060 -8281060 - ORR1D1 LTR MaLR -204 170 4 6 1709 243 0 0 0 chr4 147349397 147349424 -8280696 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1709 1044 58 0 0 chr4 147349467 147349606 -8280514 - B1_Mus1 SINE Alu 0 148 10 6 1709 333 0 0 0 chr4 147349617 147349654 -8280466 + (TTG)n Simple_repeat Simple_repeat 3 39 0 6 1709 495 244 156 17 chr4 147349738 147349917 -8280203 + B3 SINE B2 1 204 -12 6 1709 1397 350 34 9 chr4 147350210 147350772 -8279348 + Lx8 LINE L1 6805 7380 -93 6 1709 554 52 26 0 chr4 147350772 147350849 -8279271 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 1709 793 264 20 8 chr4 147350948 147351136 -8278984 - B3A SINE B2 -10 185 4 6 1709 501 56 0 0 chr4 147351204 147351276 -8278844 + L1Md_F2 LINE L1 6499 6570 -12 6 1709 1791 153 158 3 chr4 147351358 147351712 -8278408 + MTC LTR MaLR 13 421 0 6 1709 1857 122 29 38 chr4 147352234 147352548 -8277572 + RLTR10E LTR ERVK 1 311 0 6 1709 247 275 87 0 chr4 147353365 147353434 -8276686 - MLT1C LTR MaLR -340 127 53 6 1709 329 264 240 0 chr4 147353520 147353641 -8276479 - RSINE1 SINE B4 -14 151 2 6 1709 221 284 158 0 chr4 147354267 147354362 -8275758 - B4A SINE B4 -166 126 17 6 1709 530 321 15 0 chr4 147354393 147354530 -8275590 - B1F1 SINE Alu -10 139 1 6 1709 243 168 147 128 chr4 147354532 147354561 -8275559 + MLT1C LTR MaLR 154 177 -290 6 1709 3605 88 19 9 chr4 147354561 147355086 -8275034 + L1Md_F2 LINE L1 6053 6582 0 6 1709 243 168 147 128 chr4 147355086 147355165 -8274955 + MLT1C LTR MaLR 178 264 -203 6 1709 271 277 115 8 chr4 147355460 147355584 -8274536 + L2a LINE L2 3269 3426 0 6 1709 315 204 0 0 chr4 147356113 147356167 -8273953 + ID SINE ID 6 59 -165 6 1709 261 277 31 0 chr4 147356162 147356227 -8273893 - ID SINE ID -153 71 5 6 1709 217 118 29 0 chr4 147356256 147356290 -8273830 - B3 SINE B2 -93 123 89 6 1709 567 240 16 0 chr4 147356294 147356419 -8273701 + ID_B1 SINE B4 63 189 -35 6 1709 239 384 7 22 chr4 147356542 147356678 -8273442 - YREP_Mm Unknown Unknown -1496 316 183 6 1709 708 211 42 17 chr4 147356558 147356735 -8273385 + ID_B1 SINE B4 98 290 -2 6 1709 295 217 0 0 chr4 147356712 147356772 -8273348 + B3 SINE B2 152 211 -5 6 1709 606 237 202 0 chr4 147357761 147357934 -8272186 + ID_B1 SINE B4 9 216 -8 6 1709 288 235 0 124 chr4 147357929 147358026 -8272094 + MT2B LTR ERVL 172 256 -345 6 1709 665 199 0 8 chr4 147357944 147358071 -8272049 + B1_Mur4 SINE Alu 23 148 -2 6 1709 735 196 14 7 chr4 147358082 147358221 -8271899 - B3 SINE B2 -73 143 4 6 1709 571 226 181 0 chr4 147358224 147358312 -8271808 + MTE2a LTR MaLR 77 171 -208 6 1709 351 0 0 0 chr4 147358312 147358351 -8271769 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1709 571 226 181 0 chr4 147358351 147358417 -8271703 + MTE2a LTR MaLR 172 258 -121 6 1709 654 260 82 10 chr4 147358425 147358619 -8271501 + MTE-int LTR MaLR 169 376 -1204 6 1709 412 321 74 49 chr4 147358645 147358848 -8271272 + MTE-int LTR MaLR 670 877 -703 6 1709 239 98 39 0 chr4 147361173 147361224 -8268896 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 6 1709 458 182 89 18 chr4 147361360 147361472 -8268648 - PB1D9 SINE Alu 0 120 1 6 1709 230 304 0 115 chr4 147361526 147361604 -8268516 - MIRc SINE MIR -98 178 107 6 1709 356 306 25 33 chr4 147361956 147362115 -8268005 - MIRc SINE MIR -92 176 10 6 1709 733 132 116 0 chr4 147362549 147362670 -8267450 + B1_Mur4 SINE Alu 3 137 -13 6 1709 588 14 0 0 chr4 147362673 147362742 -8267378 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1709 747 275 176 0 chr4 147362781 147363014 -8267106 + B4A SINE B4 13 286 -6 6 1709 388 319 96 0 chr4 147363100 147363235 -8266885 + ID_B1 SINE B4 30 177 -47 6 1709 231 103 0 0 chr4 147363254 147363293 -8266827 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 6 1709 198 0 0 0 chr4 147363303 147363325 -8266795 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1709 1771 200 47 25 chr4 147363325 147363730 -8266390 + MTD LTR MaLR 6 419 0 6 1709 569 268 29 47 chr4 147363741 147363913 -8266207 - MTD LTR MaLR -246 173 5 6 1709 1260 229 96 53 chr4 147363956 147364393 -8265727 + MTD-int LTR MaLR 801 1256 -2 6 1709 1120 209 23 156 chr4 147364421 147364624 -8265496 + MTD LTR MaLR 6 203 -216 6 1709 1237 34 0 0 chr4 147364624 147364771 -8265349 + B1_Mm SINE Alu 1 147 0 6 1709 1120 209 23 156 chr4 147364771 147364919 -8265201 + MTD LTR MaLR 204 310 -109 6 1709 315 113 0 0 chr4 147365090 147365143 -8264977 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1709 189 132 0 0 chr4 147365626 147365664 -8264456 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1709 666 96 53 18 chr4 147365719 147365888 -8264232 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1709 1691 233 47 57 chr4 147365921 147366431 -8263689 - RMER19C LTR ERVK 0 611 107 7 1709 670 123 41 6 chr4 147366486 147366658 -8263462 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 1709 666 286 108 39 chr4 147366703 147366882 -8263238 - B4A SINE B4 0 292 119 7 1709 603 289 59 0 chr4 147366882 147367069 -8263051 - B3 SINE B2 -17 199 2 7 1709 666 286 108 39 chr4 147367069 147367080 -8263040 - B4A SINE B4 -174 118 100 7 1709 330 34 68 0 chr4 147367080 147367139 -8262981 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 7 1709 1082 52 0 0 chr4 147367141 147367275 -8262845 - B1_Mus2 SINE Alu -12 135 2 7 1709 666 286 108 39 chr4 147367275 147367338 -8262782 - B4A SINE B4 -193 99 20 7 1709 670 333 24 14 chr4 147367362 147367572 -8262548 - ID_B1 SINE B4 -12 212 1 7 1709 323 289 44 29 chr4 147368525 147368669 -8261451 + MLT1C LTR MaLR 1 158 -232 7 1709 569 297 10 62 chr4 147368670 147368878 -8261242 + ID_B1 SINE B4 3 199 -25 7 1709 378 314 22 49 chr4 147368901 147369085 -8261035 + MLT1C LTR MaLR 264 442 -25 7 1709 632 336 108 47 chr4 147369272 147369715 -8260405 + MLT1F2 LTR MaLR 25 494 -66 7 1709 345 47 0 0 chr4 147369906 147369949 -8260171 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1709 610 170 51 0 chr4 147370065 147370202 -8259918 - B1_Mur1 SINE Alu 0 150 1 7 1709 529 187 45 27 chr4 147370206 147370302 -8259818 + PB1D9 SINE Alu 9 109 -11 7 1709 207 0 0 0 chr4 147370302 147370325 -8259795 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1709 529 187 45 27 chr4 147370325 147370338 -8259782 + PB1D9 SINE Alu 110 120 0 7 1709 1070 111 43 22 chr4 147370351 147370536 -8259584 - B2_Mm2 SINE B2 -5 190 2 7 1709 570 279 6 31 chr4 147370565 147370724 -8259396 - RSINE1 SINE B4 -8 157 3 7 1709 315 204 45 125 chr4 147370755 147370867 -8259253 + RLTR11A2 LTR ERVK 1 103 -424 7 1709 1217 27 7 0 chr4 147370867 147371014 -8259106 + B1_Mus1 SINE Alu 1 148 0 7 1709 629 309 63 38 chr4 147371042 147371361 -8258759 + BGLII_B LTR ERVK 88 414 -27 7 1709 388 234 46 18 chr4 147371382 147371491 -8258629 - B4 SINE B4 -179 113 2 7 1709 560 239 7 51 chr4 147371497 147371537 -8258583 - ID_B1 SINE B4 -1 223 190 7 1709 2773 16 0 0 chr4 147371537 147371859 -8258261 + RLTRETN_Mm LTR ERVK 1 322 0 7 1709 560 239 7 51 chr4 147371859 147371955 -8258165 - ID_B1 SINE B4 -35 189 93 7 1709 244 312 91 30 chr4 147372306 147372405 -8257715 - B3 SINE B2 0 216 112 7 1709 957 174 17 28 chr4 147372457 147372634 -8257486 + URR1A DNA MER1_type 21 195 -31 7 1709 516 263 79 53 chr4 147372641 147372684 -8257436 - B4A SINE B4 -68 224 177 7 1709 180 0 0 0 chr4 147372684 147372704 -8257416 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1709 516 263 79 53 chr4 147372704 147372849 -8257271 - B4A SINE B4 -116 176 31 7 1709 215 219 0 0 chr4 147376852 147376893 -8253227 - PB1D9 SINE Alu -27 93 53 7 1709 261 254 0 0 chr4 147377059 147377118 -8253002 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1709 647 224 13 20 chr4 147377275 147377425 -8252695 + B1_Mur2 SINE Alu 1 149 0 7 1709 217 270 87 39 chr4 147378194 147378298 -8251822 + PB1D10 SINE Alu 2 110 -7 7 1709 189 0 0 0 chr4 147379114 147379135 -8250985 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1709 319 167 196 59 chr4 147381296 147381398 -8248722 - PB1D10 SINE Alu 0 117 2 7 1709 1476 184 174 6 chr4 147381497 147381847 -8248273 - MTC LTR MaLR -8 413 5 7 1709 435 213 58 0 chr4 147381871 147381980 -8248140 + B1F1 SINE Alu 2 115 -34 7 1709 285 179 43 29 chr4 147382395 147382464 -8247656 + RSINE1 SINE B4 53 122 -43 7 1709 403 256 115 16 chr4 147383328 147383525 -8246595 + MLT1C LTR MaLR 2 212 -178 7 1709 315 243 0 0 chr4 147384420 147384490 -8245630 + ID_B1 SINE B4 155 224 0 7 1709 219 67 57 151 chr4 147384445 147384498 -8245622 + PB1D10 SINE Alu 70 117 0 7 1709 224 245 19 0 chr4 147385412 147385465 -8244655 - ID4_ SINE ID -21 62 9 7 1709 251 173 19 0 chr4 147385855 147385907 -8244213 - B1_Mur4 SINE Alu -97 53 1 7 1709 267 103 0 0 chr4 147386309 147386348 -8243772 + (TCTCCC)n Simple_repeat Simple_repeat 3 41 0 7 1709 263 240 0 26 chr4 147386355 147386432 -8243688 - PB1D10 SINE Alu -3 114 40 7 1709 462 304 30 0 chr4 147389140 147389275 -8240845 - B4 SINE B4 -152 140 2 7 1709 213 282 80 34 chr4 147390044 147390132 -8239988 + MIRc SINE MIR 72 163 -105 7 1709 424 194 71 0 chr4 147392238 147392336 -8237784 - RSINE1 SINE B4 -57 108 4 7 1709 287 206 263 32 chr4 147392347 147392442 -8237678 + PB1D9 SINE Alu 3 119 -1 7 1709 3151 48 0 114 chr4 147394309 147394503 -8235617 + MTB LTR MaLR 3 196 -204 7 1709 1548 82 0 5 chr4 147394503 147394699 -8235421 + B2_Mm2 SINE B2 1 195 0 7 1709 3151 48 0 114 chr4 147394699 147394953 -8235167 + MTB LTR MaLR 197 400 0 7 1709 737 346 26 8 chr4 147395767 147396032 -8234088 + B4 SINE B4 2 271 -21 7 1709 303 231 108 0 chr4 147396199 147396264 -8233856 - ID4 SINE ID -9 74 3 7 1709 350 210 168 0 chr4 147396284 147396403 -8233717 - B1F2 SINE Alu -1 148 10 7 1709 465 275 34 34 chr4 147396413 147396560 -8233560 - B1F1 SINE Alu 0 149 3 7 1709 247 309 95 0 chr4 147396700 147396784 -8233336 + Cheshire DNA MER1_type 2324 2415 -5 7 1709 343 309 164 44 chr4 147397054 147397372 -8232748 + ORR1E LTR MaLR 4 359 0 7 1709 786 160 76 0 chr4 147398017 147398148 -8231972 + B1_Mus1 SINE Alu 1 141 -7 7 1709 633 149 15 36 chr4 147398444 147398584 -8231536 - B1_Mus1 SINE Alu -20 128 1 7 1709 690 211 14 148 chr4 147398605 147398828 -8231292 - B3A SINE B2 -5 193 1 7 1709 413 250 113 70 chr4 147398840 147398982 -8231138 + B1_Mur2 SINE Alu 2 149 0 7 1709 698 173 88 62 chr4 147398995 147399155 -8230965 + RSINE1 SINE B4 2 165 0 7 1709 387 230 58 58 chr4 147399706 147399826 -8230294 - B1F SINE Alu -1 148 29 7 1709 1741 21 0 0 chr4 147399849 147400042 -8230078 - B2_Mm1a SINE B2 0 193 1 7 1709 374 281 6 156 chr4 147400310 147400483 -8229637 + B1_Mur2 SINE Alu 3 149 0 7 1709 210 200 0 0 chr4 147400890 147400907 -8229213 + A-rich Low_complexity Low_complexity 1 17 0 7 1709 1278 34 0 0 chr4 147400907 147401055 -8229065 + B1_Mus1 SINE Alu 1 148 0 7 1709 210 200 0 0 chr4 147401055 147401107 -8229013 + A-rich Low_complexity Low_complexity 18 69 0 7 1709 307 238 0 12 chr4 147402943 147403024 -8227096 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1709 550 294 13 0 chr4 147403024 147403064 -8227056 - RSINE1 SINE B4 0 165 126 7 1709 930 140 0 0 chr4 147403064 147403243 -8226877 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1709 550 294 13 0 chr4 147403243 147403355 -8226765 - RSINE1 SINE B4 -40 125 12 7 1709 1243 34 7 0 chr4 147404091 147404237 -8225883 + B1_Mus2 SINE Alu 1 147 0 7 1709 248 170 21 0 chr4 147404275 147404322 -8225798 - B3A SINE B2 -150 48 1 7 1709 1533 22 33 16 chr4 147404396 147404578 -8225542 - B2_Mm1a SINE B2 -7 186 2 7 1709 815 28 0 0 chr4 147405083 147405190 -8224930 - B1_Mus2 SINE Alu 0 147 41 7 1709 404 186 0 0 chr4 147405200 147405270 -8224850 + B3A SINE B2 31 100 -98 7 1709 807 223 148 5 chr4 147405346 147405535 -8224585 - B3 SINE B2 0 216 1 7 1709 24 0 0 0 chr4 147405539 147405563 -8224557 + AT_rich Low_complexity Low_complexity 1 24 0 7 1709 679 204 83 8 chr4 147406617 147406750 -8223370 + B1_Mur1 SINE Alu 1 143 -6 7 1709 987 94 18 0 chr4 147406782 147406953 -8223167 + (CA)n Simple_repeat Simple_repeat 2 175 0 7 1709 1493 43 0 16 chr4 147407047 147407238 -8222882 + L1Md_F3 LINE L1 6397 6584 0 7 1709 919 82 88 15 chr4 147407470 147407606 -8222514 + B1_Mus2 SINE Alu 2 147 0 7 1709 755 107 264 0 chr4 147407656 147407796 -8222324 + B2_Mm1t SINE B2 3 179 -14 7 1709 431 99 319 18 chr4 147407862 147407975 -8222145 + B2_Mm2 SINE B2 47 193 -2 7 1709 325 167 194 0 chr4 147408227 147408299 -8221821 + PB1D10 SINE Alu 14 99 -18 7 1709 361 268 12 0 chr4 147408344 147408426 -8221694 - ID4 SINE ID 0 83 1 7 1709 375 325 34 67 chr4 147408441 147408510 -8221610 + MER21B LTR ERV1 161 225 -638 7 1709 1162 64 0 14 chr4 147408510 147408653 -8221467 + B1_Mus2 SINE Alu 1 141 -6 7 1709 219 36 0 0 chr4 147408655 147408683 -8221437 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1709 414 293 152 33 chr4 147408683 147408963 -8221157 + MER21B LTR ERV1 226 544 -319 7 1709 195 42 0 0 chr4 147408984 147409008 -8221112 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 7 1709 900 191 14 0 chr4 147409018 147409165 -8220955 - B1_Mur2 SINE Alu 0 149 1 7 1709 256 326 121 22 chr4 147409331 147409513 -8220607 + LTR48B LTR ERV1 141 340 -304 7 1709 1273 47 0 12 chr4 147409937 147410098 -8220022 + B2_Mm1t SINE B2 1 160 -33 7 1709 465 66 0 0 chr4 147410098 147410159 -8219961 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 7 1709 224 223 245 28 chr4 147410171 147410277 -8219843 + RSINE1 SINE B4 5 133 -32 7 1709 1139 64 0 7 chr4 147410303 147410445 -8219675 + B1_Mus2 SINE Alu 1 141 -6 7 1709 183 42 0 0 chr4 147410448 147410472 -8219648 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1709 794 235 152 5 chr4 147410480 147410664 -8219456 - B3 SINE B2 -5 211 1 7 1709 1110 98 0 0 chr4 147410827 147410970 -8219150 + B1_Mus2 SINE Alu 5 147 0 7 1709 1509 58 16 0 chr4 147411094 147411284 -8218836 + B2_Mm1a SINE B2 1 193 0 7 1709 1199 85 83 22 chr4 147411384 147411565 -8218555 + B2_Mm2 SINE B2 1 192 -3 7 1709 602 189 111 22 chr4 147413611 147413746 -8216374 - B1_Mus2 SINE Alu 0 147 1 7 1709 1193 75 0 0 chr4 147414172 147414319 -8215801 + B1_Mm SINE Alu 1 147 0 7 1709 424 238 101 58 chr4 147416411 147416549 -8213571 + B1F1 SINE Alu 1 144 -5 8 1709 695 267 30 112 chr4 147416553 147416706 -8213414 + ID_B1 SINE B4 8 149 -75 8 1709 912 140 35 7 chr4 147416706 147416850 -8213270 + B1_Mur2 SINE Alu 1 148 -1 8 1709 695 267 30 112 chr4 147416850 147416928 -8213192 + ID_B1 SINE B4 150 220 -4 8 1709 211 296 43 43 chr4 147418396 147418488 -8211632 - L2c LINE L2 -28 3359 3268 8 1709 327 192 26 124 chr4 147419243 147419356 -8210764 + MT2B LTR ERVL 156 257 -344 8 1709 854 144 0 0 chr4 147419261 147419400 -8210720 + B1_Mur3 SINE Alu 10 148 -1 8 1709 223 185 17 85 chr4 147419574 147419633 -8210487 + ID SINE ID 29 83 -141 8 1709 627 242 65 0 chr4 147419697 147419850 -8210270 - RSINE1 SINE B4 0 165 3 8 1709 802 227 70 5 chr4 147420200 147420386 -8209734 + B3A SINE B2 1 198 0 8 1709 283 164 36 0 chr4 147420407 147420462 -8209658 + B2_Mm2 SINE B2 2 58 -137 8 1709 264 108 169 0 chr4 147420442 147420507 -8209613 + B2_Mm1t SINE B2 116 191 -2 8 1709 241 250 16 0 chr4 147420843 147420907 -8209213 + CT-rich Low_complexity Low_complexity 3 67 0 8 1709 396 0 0 0 chr4 147421232 147421276 -8208844 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1709 457 237 544 0 chr4 147421382 147421520 -8208600 - B3 SINE B2 -3 213 1 8 1709 29 0 0 0 chr4 147421565 147421594 -8208526 + AT_rich Low_complexity Low_complexity 1 29 0 8 1709 585 181 82 59 chr4 147421602 147421737 -8208383 + B1_Mur1 SINE Alu 2 139 -10 8 1709 189 74 0 0 chr4 147421737 147421764 -8208356 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1709 244 228 174 0 chr4 147422570 147422662 -8207458 + PB1D7 SINE Alu 1 108 -12 8 1709 1898 133 46 6 chr4 147422735 147423060 -8207060 + ORR1A2 LTR MaLR 1 338 -8 8 1709 9957 137 114 16 chr4 147423065 147424852 -8205268 + ORR1A2-int LTR MaLR 2 1963 0 8 1709 2365 98 35 0 chr4 147424852 147425168 -8204952 + ORR1A2 LTR MaLR 1 327 0 8 1709 194 146 104 0 chr4 147426898 147426946 -8203174 + MIRc SINE MIR 97 149 -119 8 1709 396 260 101 42 chr4 147428081 147428282 -8201838 - B4A SINE B4 -20 272 1 8 1709 315 167 0 0 chr4 147428459 147428525 -8201595 + T-rich Low_complexity Low_complexity 1 66 0 8 1709 862 120 103 22 chr4 147428529 147428665 -8201455 - B1_Mus1 SINE Alu 0 148 2 8 1709 306 185 26 26 chr4 147428801 147428880 -8201240 + PB1D10 SINE Alu 21 101 -48 8 1709 630 26 0 0 chr4 147428880 147428956 -8201164 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1709 300 111 0 0 chr4 147433694 147433739 -8196381 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1709 658 227 31 78 chr4 147433740 147433931 -8196189 - B3A SINE B2 -16 182 1 8 1709 341 319 42 35 chr4 147434046 147434189 -8195931 - RSINE1 SINE B4 -19 146 3 8 1709 530 213 17 61 chr4 147434208 147434323 -8195797 - PB1D9 SINE Alu -9 111 2 8 1709 649 271 8 130 chr4 147435810 147436048 -8194072 + ID_B1 SINE B4 3 211 -13 8 1709 263 325 13 0 chr4 147436659 147436736 -8193384 - ID4_ SINE ID -1 82 5 8 1709 785 275 4 39 chr4 147436799 147437030 -8193090 + ID_B1 SINE B4 1 223 -1 8 1709 743 248 44 19 chr4 147437061 147437267 -8192853 + B3 SINE B2 1 211 -5 8 1709 276 278 138 9 chr4 147437286 147437402 -8192718 + Charlie8 DNA MER1_type 116 246 -2182 8 1709 347 337 35 79 chr4 147437565 147437768 -8192352 + MLT1F2 LTR MaLR 317 510 -50 8 1709 1219 68 0 0 chr4 147437779 147437926 -8192194 + B1_Mus2 SINE Alu 1 147 0 8 1709 207 0 0 0 chr4 147437926 147437949 -8192171 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1709 367 284 74 7 chr4 147438408 147438543 -8191577 - MIRc SINE MIR -73 195 52 8 1709 382 231 0 13 chr4 147439091 147439170 -8190950 - MIR SINE MIR -108 154 77 8 1709 264 122 0 0 chr4 147439819 147439860 -8190260 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 8 1709 189 0 0 0 chr4 147440105 147440126 -8189994 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1709 181 365 45 52 chr4 147441574 147441863 -8188257 + L2 LINE L2 2682 2968 -451 8 1709 501 250 9 0 chr4 147442650 147442758 -8187362 - PB1 SINE Alu -18 109 1 8 1709 314 234 64 0 chr4 147442927 147443068 -8187052 + ORR1B1-int LTR MaLR 605 754 -755 8 1709 1045 36 15 0 chr4 147442971 147443108 -8187012 + B1_Mus1 SINE Alu 10 148 0 8 1709 207 0 0 0 chr4 147443108 147443131 -8186989 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1709 922 244 14 14 chr4 147443147 147443363 -8186757 + B3 SINE B2 1 216 0 8 1709 195 157 0 0 chr4 147444020 147444071 -8186049 + A-rich Low_complexity Low_complexity 5 55 0 8 1709 243 0 0 0 chr4 147446582 147446609 -8183511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1709 630 181 47 16 chr4 147446644 147446773 -8183347 - B3 SINE B2 -83 133 1 8 1709 296 191 42 42 chr4 147447189 147447260 -8182860 + ID4 SINE ID 2 72 -11 8 1709 258 32 0 0 chr4 147447456 147447487 -8182633 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 8 1709 1281 27 0 13 chr4 147447507 147447656 -8182464 - B1_Mm SINE Alu 0 147 1 8 1709 676 219 58 0 chr4 147447658 147447795 -8182325 - B1_Mur2 SINE Alu 0 149 5 8 1709 3983 30 4 0 chr4 147447806 147448265 -8181855 + L1Md_F2 LINE L1 6121 6581 -1 8 1709 400 250 86 35 chr4 147448266 147448382 -8181738 - B3 SINE B2 -94 122 1 8 1709 1218 48 0 26 chr4 147448416 147448567 -8181553 - B1_Mus1 SINE Alu 0 148 2 8 1709 555 251 109 90 chr4 147448570 147448771 -8181349 - ID_B1 SINE B4 -8 216 12 8 1709 961 98 174 18 chr4 147448795 147448962 -8181158 - B2_Mm2 SINE B2 -1 194 2 8 1709 275 260 12 49 chr4 147450051 147450132 -8179988 - ID4_ SINE ID -2 81 4 8 1709 524 185 9 9 chr4 147450181 147450290 -8179830 + B1_Mur1 SINE Alu 33 141 -8 8 1709 1007 62 15 23 chr4 147450785 147450917 -8179203 + B1_Mus2 SINE Alu 1 131 -16 8 1709 194 286 0 105 chr4 147451239 147451277 -8178843 - MIRm SINE MIR -87 189 155 8 1709 458 243 173 22 chr4 147451277 147451291 -8178829 - RSINE1 SINE B4 -3 162 149 8 1709 225 0 0 0 chr4 147451291 147451316 -8178804 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1709 458 243 173 22 chr4 147451316 147451440 -8178680 - RSINE1 SINE B4 -17 148 3 8 1709 250 167 0 7 chr4 147451440 147451487 -8178633 - MIR SINE MIR -122 154 106 8 1709 827 83 8 0 chr4 147451515 147451635 -8178485 - B1_Mm SINE Alu 0 147 27 8 1709 334 284 14 82 chr4 147451537 147451683 -8178437 - RLTR25B LTR ERVK -507 521 386 8 1709 541 246 123 0 chr4 147451708 147451838 -8178282 - RSINE1 SINE B4 -17 148 3 8 1709 212 309 37 0 chr4 147452300 147452381 -8177739 + L2 LINE L2 2599 2682 -737 8 1709 791 91 0 16 chr4 147453071 147453194 -8176926 - B1_Mus2 SINE Alu -2 145 25 8 1709 197 108 27 0 chr4 147453239 147453276 -8176844 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1709 248 286 0 54 chr4 147453276 147453350 -8176770 - RSINE1 SINE B4 -2 163 94 8 1709 387 0 0 0 chr4 147455922 147455965 -8174155 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1710 199 303 191 0 chr4 147456597 147456686 -8173434 + L2 LINE L2 2753 2858 -561 8 1710 184 264 106 75 chr4 147456991 147457085 -8173035 - MIRb SINE MIR -84 184 88 8 1710 524 259 86 95 chr4 147457105 147457464 -8172656 - RMER10A LTR ERVL -25 417 62 8 1710 578 148 25 42 chr4 147458149 147458269 -8171851 + B1_Mur4 SINE Alu 33 150 0 8 1710 189 196 43 0 chr4 147458298 147458344 -8171776 + MIR SINE MIR 106 153 -109 8 1710 21 0 0 0 chr4 147458691 147458712 -8171408 + GC_rich Low_complexity Low_complexity 1 21 0 8 1710 192 97 0 0 chr4 147458967 147458998 -8171122 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1710 1231 61 0 0 chr4 147458998 147459145 -8170975 - B1_Mus2 SINE Alu 0 147 1 8 1710 613 53 106 0 chr4 147459147 147459241 -8170879 - B1_Mm SINE Alu 0 147 44 8 1710 377 298 79 24 chr4 147459256 147459421 -8170699 - MIRb SINE MIR -76 192 19 8 1710 241 260 127 55 chr4 147460138 147460248 -8169872 + MER53 DNA hAT 1 118 -75 8 1710 232 346 11 2 chr4 147460493 147460601 -8169519 + MIRb SINE MIR 33 147 -121 8 1710 759 212 0 33 chr4 147460618 147460769 -8169351 + B1_Mur1 SINE Alu 2 147 -2 8 1710 757 237 141 25 chr4 147460828 147461027 -8169093 + ID_B1 SINE B4 3 224 0 8 1710 26 0 0 0 chr4 147461997 147462023 -8168097 + GC_rich Low_complexity Low_complexity 1 26 0 8 1710 219 264 103 0 chr4 147462444 147462531 -8167589 + MIR SINE MIR 108 203 -59 8 1710 635 225 123 20 chr4 147462550 147462745 -8167375 + B3 SINE B2 2 216 0 8 1710 325 274 32 0 chr4 147463086 147463181 -8166939 + PB1 SINE Alu 26 123 -4 8 1710 409 274 28 0 chr4 147463698 147463804 -8166316 - PB1D10 SINE Alu 0 117 9 8 1710 277 290 21 11 chr4 147463721 147463815 -8166305 - ID_B1 SINE B4 -52 172 78 8 1710 545 314 71 49 chr4 147463971 147464240 -8165880 - B4A SINE B4 -16 276 2 8 1710 676 218 37 63 chr4 147464252 147464281 -8165839 - B2_Mm2 SINE B2 -8 187 159 8 1710 492 48 0 0 chr4 147464281 147464344 -8165776 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1710 818 219 12 6 chr4 147464344 147464505 -8165615 - B3 SINE B2 -53 163 2 8 1710 194 0 39 0 chr4 147464514 147464540 -8165580 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1710 1641 47 0 0 chr4 147464558 147464749 -8165371 - B2_Mm1a SINE B2 -2 191 1 8 1710 3192 45 3 0 chr4 147464749 147465127 -8164993 - L1Md_F2 LINE L1 -3 6579 6201 8 1710 198 0 0 0 chr4 147465215 147465237 -8164883 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1710 459 0 0 0 chr4 147465237 147465287 -8164833 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1710 582 278 24 30 chr4 147465287 147465454 -8164666 + ID_B1 SINE B4 5 170 -54 9 1710 395 250 30 50 chr4 147465366 147465467 -8164653 + PB1D10 SINE Alu 7 105 -12 9 1710 1624 146 80 10 chr4 147465469 147465777 -8164343 + ORR1D1 LTR MaLR 1 330 -44 9 1710 1474 138 160 77 chr4 147465777 147466051 -8164069 + ORR1B2 LTR MaLR 3 314 -53 9 1710 1305 20 0 0 chr4 147466051 147466198 -8163922 + B1_Mus1 SINE Alu 2 148 0 9 1710 1474 138 160 77 chr4 147466198 147466260 -8163860 + ORR1B2 LTR MaLR 315 367 0 9 1710 228 232 57 14 chr4 147466471 147466541 -8163579 + MER34 LTR ERV1 381 453 -89 9 1710 258 130 37 0 chr4 147467272 147467326 -8162794 - B3 SINE B2 0 216 161 9 1710 4667 79 89 72 chr4 147467332 147467479 -8162641 - RLTR13D6 LTR ERVK -19 883 738 9 1710 285 51 0 0 chr4 147467479 147467518 -8162602 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1710 4667 79 89 72 chr4 147467518 147467590 -8162530 - RLTR13D6 LTR ERVK -165 737 654 9 1710 1263 93 55 6 chr4 147467590 147467744 -8162376 + B2_Mm1a SINE B2 2 156 -37 9 1710 273 29 0 0 chr4 147467744 147467778 -8162342 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 9 1710 1263 93 55 6 chr4 147467778 147467806 -8162314 + B2_Mm1a SINE B2 157 193 0 9 1710 4667 79 89 72 chr4 147467806 147468454 -8161666 - RLTR13D6 LTR ERVK -249 653 3 9 1710 351 246 20 118 chr4 147468538 147468690 -8161430 + MT2B LTR ERVL 128 264 -337 9 1710 777 139 14 21 chr4 147468587 147468727 -8161393 + B1_Mur3 SINE Alu 10 148 -1 9 1710 791 238 82 5 chr4 147468750 147468944 -8161176 + B3 SINE B2 1 209 -7 9 1710 209 140 0 23 chr4 147469486 147469530 -8160590 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1710 1206 102 42 21 chr4 147470564 147470754 -8159366 + B2_Mm2 SINE B2 2 195 0 9 1710 675 213 52 0 chr4 147470882 147471037 -8159083 + MLT2C1 LTR ERVL 178 340 -57 9 1710 511 48 0 160 chr4 147471427 147471527 -8158593 + B1_Mus2 SINE Alu 40 123 -24 9 1710 319 295 107 27 chr4 147472754 147472904 -8157216 - B2_Mm2 SINE B2 -19 176 15 9 1710 775 129 8 0 chr4 147474198 147474322 -8155798 - B1_Mur2 SINE Alu 0 149 25 9 1710 569 250 0 83 chr4 147474360 147474517 -8155603 + B1_Mur1 SINE Alu 1 144 -5 9 1710 552 100 0 0 chr4 147474584 147474664 -8155456 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1710 202 236 40 27 chr4 147474701 147474775 -8155345 - MIR SINE MIR -127 135 61 9 1710 233 245 0 0 chr4 147475808 147475861 -8154259 - ID SINE ID -170 54 2 9 1710 477 230 52 26 chr4 147475891 147476007 -8154113 + PB1D7 SINE Alu 2 120 0 9 1710 332 196 85 93 chr4 147476816 147476934 -8153186 + PB1D10 SINE Alu 1 117 0 9 1710 836 188 21 0 chr4 147477025 147477169 -8152951 + B1_Mus2 SINE Alu 1 147 0 9 1710 399 274 19 9 chr4 147477278 147477385 -8152735 + B4A SINE B4 6 113 -179 9 1710 855 108 120 23 chr4 147477439 147477572 -8152548 + B1_Mus1 SINE Alu 1 146 -2 9 1710 1265 65 6 0 chr4 147477594 147477764 -8152356 + B2_Mm1a SINE B2 1 171 -22 9 1710 249 57 0 0 chr4 147477768 147477803 -8152317 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1710 260 258 60 114 chr4 147477803 147477936 -8152184 + B4 SINE B4 79 276 -16 9 1710 1016 238 9 9 chr4 147478299 147478515 -8151605 - ID_B1 SINE B4 -8 216 1 9 1710 265 312 173 13 chr4 147479106 147479262 -8150858 - ID_B1 SINE B4 -12 212 32 9 1710 190 308 0 0 chr4 147479293 147479345 -8150775 + L2 LINE L2 2791 2842 -577 9 1710 474 277 8 30 chr4 147479546 147479680 -8150440 - ID_B1 SINE B4 -12 212 82 9 1710 701 194 7 21 chr4 147480181 147480323 -8149797 + B1_Mur1 SINE Alu 9 148 -1 9 1710 948 234 19 5 chr4 147480333 147480539 -8149581 - B3 SINE B2 -6 210 2 9 1710 243 268 127 0 chr4 147480549 147480562 -8149558 - ID SINE ID -141 83 7 9 1710 262 182 127 0 chr4 147480562 147480617 -8149503 - tRNA-Ala-GCY_ tRNA tRNA -13 62 1 9 1710 369 156 30 0 chr4 147480634 147480708 -8149412 - B1_Mur2 SINE Alu -8 112 37 9 1710 252 305 155 58 chr4 147480638 147480726 -8149394 - MT2B2 LTR ERVL -323 261 95 9 1710 293 280 0 0 chr4 147480726 147480801 -8149319 - PB1D10 SINE Alu 0 117 43 9 1710 252 305 155 58 chr4 147480801 147480812 -8149308 - MT2B2 LTR ERVL -323 94 71 9 1710 614 49 12 0 chr4 147480826 147480908 -8149212 + (TC)n Simple_repeat Simple_repeat 1 83 0 9 1710 437 250 127 40 chr4 147480955 147481105 -8149015 - RSINE1 SINE B4 0 165 3 9 1710 310 240 50 30 chr4 147481108 147481207 -8148913 - PB1D7 SINE Alu -1 119 19 9 1710 262 258 0 31 chr4 147481226 147481290 -8148830 + polypyrimidine Low_complexity Low_complexity 4 65 0 9 1710 358 324 9 9 chr4 147481343 147481452 -8148668 + PB1D10 SINE Alu 1 109 -8 9 1710 262 206 29 29 chr4 147482454 147482524 -8147596 - MIR3 SINE MIR -23 185 116 9 1710 432 185 0 32 chr4 147483077 147483172 -8146948 - ID_B1 SINE B4 -33 191 100 9 1710 846 69 0 0 chr4 147484824 147484940 -8145180 - B1_Mus2 SINE Alu 0 147 32 9 1710 569 237 27 82 chr4 147484939 147485086 -8145034 + B3A SINE B2 59 197 -1 9 1710 209 194 0 0 chr4 147485157 147485193 -8144927 + CT-rich Low_complexity Low_complexity 2 37 0 9 1710 898 291 5 0 chr4 147485196 147485406 -8144714 - ID_B1 SINE B4 -3 221 11 9 1710 562 240 13 58 chr4 147485518 147485673 -8144447 - B1F SINE Alu 0 149 2 9 1710 1115 107 65 0 chr4 147485883 147485902 -8144218 - B2_Mm2 SINE B2 -16 179 159 9 1710 423 0 0 0 chr4 147485902 147485949 -8144171 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 1710 1115 107 65 0 chr4 147485949 147486097 -8144023 - B2_Mm2 SINE B2 -37 158 2 9 1710 1410 151 31 12 chr4 147486360 147486615 -8143505 + MT2A LTR ERVL 40 299 -234 9 1710 627 125 125 0 chr4 147486633 147486761 -8143359 + MT2A LTR ERVL 383 526 -7 9 1710 228 228 0 0 chr4 147487384 147487441 -8142679 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1710 444 329 35 6 chr4 147487498 147487669 -8142451 - MIRb SINE MIR -67 201 26 9 1710 920 192 24 77 chr4 147488432 147488641 -8141479 + B3A SINE B2 1 198 0 9 1710 284 250 24 12 chr4 147488802 147488887 -8141233 + CT-rich Low_complexity Low_complexity 2 87 0 9 1710 240 331 62 31 chr4 147489153 147489281 -8140839 - MIR SINE MIR -123 139 8 9 1710 281 188 0 21 chr4 147490341 147490407 -8139713 - B2_Mm2 SINE B2 -107 109 47 9 1710 1501 40 11 0 chr4 147490420 147490597 -8139523 - B2_Mm1t SINE B2 -14 179 1 9 1710 362 235 183 0 chr4 147490631 147490746 -8139374 - ID_B1 SINE B4 -8 216 81 9 1710 666 205 76 81 chr4 147490889 147491084 -8139036 - B3A SINE B2 0 195 1 9 1710 711 215 69 0 chr4 147491095 147491225 -8138895 - B1_Mur1 SINE Alu -10 139 1 9 1710 615 90 0 0 chr4 147491225 147491325 -8138795 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 9 1710 387 0 0 0 chr4 147491331 147491374 -8138746 + (TTA)n Simple_repeat Simple_repeat 2 44 0 9 1710 350 277 18 0 chr4 147491374 147491470 -8138650 - PB1D7 SINE Alu -10 110 1 9 1710 1040 177 120 0 chr4 147491598 147491790 -8138330 + B3 SINE B2 2 216 0 9 1710 372 306 42 67 chr4 147492146 147492265 -8137855 - ID_B1 SINE B4 -14 210 95 9 1710 1218 169 332 34 chr4 147493134 147493489 -8136631 + RMER6B LTR ERVK 1 461 0 9 1710 730 256 23 28 chr4 147493500 147493677 -8136443 + ID_B1 SINE B4 3 178 -46 9 1710 1210 90 72 0 chr4 147493739 147493906 -8136214 + B2_Mm1t SINE B2 1 179 -14 9 1710 320 133 316 17 chr4 147493995 147494109 -8136011 + B2_Mm2 SINE B2 47 194 -1 9 1710 543 214 107 0 chr4 147494125 147494237 -8135883 + RSINE1 SINE B4 1 124 -41 9 1710 522 0 0 0 chr4 147494270 147494328 -8135792 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1710 180 111 0 0 chr4 147494328 147494354 -8135766 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1710 469 271 139 12 chr4 147494397 147494446 -8135674 + B3 SINE B2 23 71 -145 9 1710 470 17 0 17 chr4 147494446 147494506 -8135614 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1710 469 271 139 12 chr4 147494506 147494628 -8135492 + B3 SINE B2 72 215 -1 9 1710 267 31 0 0 chr4 147494842 147494874 -8135246 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1710 698 224 14 20 chr4 147496005 147496151 -8133969 + B1F SINE Alu 5 149 0 9 1710 643 211 55 0 chr4 147496999 147497127 -8132993 - B1_Mur2 SINE Alu -10 139 5 9 1710 265 227 13 51 chr4 147497163 147497242 -8132878 + ID4_ SINE ID 5 80 -3 9 1710 318 26 0 0 chr4 147497324 147497363 -8132757 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1710 198 0 0 0 chr4 147497363 147497384 -8132736 + (GA)n Simple_repeat Simple_repeat 1 22 0 9 1710 853 162 0 14 chr4 147497387 147497525 -8132595 - B1_Mus2 SINE Alu -11 136 1 9 1710 780 236 66 57 chr4 147497525 147497735 -8132385 - ID_B1 SINE B4 -11 213 1 9 1710 1481 144 74 4 chr4 147497894 147498165 -8131955 + MTC LTR MaLR 3 292 -129 9 1710 381 214 61 149 chr4 147498448 147498596 -8131524 + B1_Mur1 SINE Alu 1 135 -14 9 1710 287 0 0 50 chr4 147498599 147498639 -8131481 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 9 1710 235 189 112 75 chr4 147498720 147498800 -8131320 + ID4 SINE ID 1 83 0 9 1710 984 202 94 0 chr4 147499443 147499646 -8130474 - ID_B1 SINE B4 -1 223 2 9 1710 1098 66 15 0 chr4 147500078 147500214 -8129906 - B1_Mm SINE Alu -9 138 1 1 1710 506 252 0 0 chr4 147500263 147500366 -8129754 - PB1D9 SINE Alu -17 103 1 2 1710 223 232 80 68 chr4 147500684 147500772 -8129348 + MIRm SINE MIR 99 187 -89 3 1710 323 107 26 26 chr4 147501040 147501117 -8129003 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1710 361 212 41 35 chr4 147501129 147501300 -8128820 + (CA)n Simple_repeat Simple_repeat 2 173 0 4 1710 879 189 7 0 chr4 147501413 147501556 -8128564 - B1_Mm SINE Alu 0 147 4 5 1710 851 255 15 44 chr4 147501556 147501761 -8128359 - B3 SINE B2 -14 202 4 6 1710 248 241 35 0 chr4 147503713 147503771 -8126349 - MIRb SINE MIR -90 178 119 7 1710 22 0 0 0 chr4 147504641 147504663 -8125457 + GC_rich Low_complexity Low_complexity 1 22 0 8 1710 783 0 0 0 chr4 147505524 147505611 -8124509 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 1710 183 216 0 0 chr4 147506559 147506596 -8123524 + MIR SINE MIR 116 152 -56 1 1710 294 282 0 0 chr4 147506610 147506695 -8123425 + L1MB7 LINE L1 5739 5823 -361 1 1710 511 299 30 0 chr4 147506707 147506841 -8123279 + RSINE1 SINE B4 11 148 -17 1 1710 24 42 0 20 chr4 147506846 147506875 -8123245 + AT_rich Low_complexity Low_complexity 1 29 0 1 1710 4129 78 23 9 chr4 147506875 147507433 -8122687 - Lx3_Mus LINE L1 -7 7002 6437 1 1710 24 42 0 20 chr4 147507433 147507452 -8122668 + AT_rich Low_complexity Low_complexity 1 19 0 1 1710 231 167 0 0 chr4 147507509 147507551 -8122569 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1710 261 172 0 0 chr4 147507640 147507704 -8122416 + T-rich Low_complexity Low_complexity 1 64 0 1 1710 925 105 33 47 chr4 147507705 147507855 -8122265 - B1_Mus1 SINE Alu 0 148 1 1 1710 823 169 7 0 chr4 147507857 147507999 -8122121 - B1_Mm SINE Alu 0 147 5 1 1710 1079 199 20 0 chr4 147508011 147508212 -8121908 - B3 SINE B2 -11 205 1 2 1710 375 336 0 66 chr4 147508250 147508387 -8121733 - RSINE1 SINE B4 0 165 38 2 1710 292 311 36 29 chr4 147508416 147508555 -8121565 + L1MB7 LINE L1 6044 6183 -1 1 1710 937 154 0 20 chr4 147508565 147508711 -8121409 + B1_Mur4 SINE Alu 1 143 -7 2 1710 248 131 0 21 chr4 147508711 147508758 -8121362 + GA-rich Low_complexity Low_complexity 1 46 0 2 1710 318 242 0 108 chr4 147508777 147508888 -8121232 - MTEb LTR MaLR -221 158 60 2 1710 653 292 17 17 chr4 147509265 147509439 -8120681 - ID_B1 SINE B4 -2 222 49 2 1710 351 0 0 0 chr4 147509632 147509671 -8120449 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1710 422 68 327 64 chr4 147509770 147509880 -8120240 - B2_Mm2 SINE B2 -10 185 47 2 1710 1310 126 0 10 chr4 147509940 147510133 -8119987 - B2_Mm2 SINE B2 -1 194 4 2 1710 34 55 0 0 chr4 147510159 147510214 -8119906 + AT_rich Low_complexity Low_complexity 1 55 0 2 1710 804 222 70 11 chr4 147510545 147510695 -8119425 + B3 SINE B2 15 164 -52 3 1710 432 0 0 0 chr4 147510695 147510743 -8119377 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1710 804 222 70 11 chr4 147510743 147510779 -8119341 + B3 SINE B2 165 211 -5 3 1710 1181 61 0 13 chr4 147510781 147510931 -8119189 + B1_Mus1 SINE Alu 1 148 0 3 1710 191 320 0 20 chr4 147510973 147510992 -8119128 - MIRb SINE MIR -69 199 181 3 1710 449 324 0 0 chr4 147510992 147511103 -8119017 - PB1D9 SINE Alu -7 113 3 3 1710 217 222 4 7 chr4 147511103 147511182 -8118938 - MIRm SINE MIR -88 180 100 3 1710 187 196 114 149 chr4 147511406 147511520 -8118600 - L2b LINE L2 -2 3373 3264 3 1710 220 125 41 20 chr4 147511660 147511709 -8118411 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 1710 536 155 0 37 chr4 147511729 147511836 -8118284 - RSINE1 SINE B4 -55 110 8 3 1710 180 376 73 28 chr4 147512740 147512918 -8117202 - MER5A DNA MER1_type -2 187 2 3 1710 1342 136 51 0 chr4 147513122 147513336 -8116784 - URR1A DNA MER1_type 0 226 2 3 1710 1004 214 0 119 chr4 147513597 147513841 -8116279 + B3 SINE B2 1 215 -1 4 1710 1053 43 62 41 chr4 147515425 147515570 -8114550 + B1_Mus1 SINE Alu 1 148 0 4 1710 213 178 0 0 chr4 147515571 147515616 -8114504 + A-rich Low_complexity Low_complexity 1 45 0 4 1710 590 248 0 15 chr4 147515634 147515765 -8114355 - B1_Mur1 SINE Alu -20 129 1 4 1710 257 337 0 84 chr4 147515680 147515787 -8114333 - MT2B2 LTR ERVL -344 240 143 4 1710 257 296 88 53 chr4 147515828 147515942 -8114178 - B3 SINE B2 -98 118 1 4 1710 222 287 49 147 chr4 147515931 147515945 -8114175 - B4 SINE B4 -50 242 229 4 1710 392 0 0 20 chr4 147515945 147515994 -8114126 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 1710 1155 49 0 53 chr4 147515994 147516145 -8113975 - B1_Mus1 SINE Alu -4 144 2 4 1710 480 251 11 59 chr4 147516145 147516292 -8113828 - ID_B1 SINE B4 -64 228 94 4 1710 1177 71 154 0 chr4 147516292 147516461 -8113659 - B2_Mm2 SINE B2 0 195 1 4 1710 222 287 49 147 chr4 147516461 147516481 -8113639 - B4 SINE B4 -196 96 78 4 1710 710 197 73 0 chr4 147516485 147516622 -8113498 - B1_Mus2 SINE Alu 0 147 1 5 1710 678 130 121 71 chr4 147516776 147516917 -8113203 - B1_Mur3 SINE Alu 0 149 2 5 1710 208 315 119 17 chr4 147517925 147518096 -8112024 - MIR SINE MIR -90 172 1 5 1710 189 0 0 0 chr4 147518660 147518681 -8111439 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 5 1710 607 194 121 23 chr4 147522660 147522792 -8107328 - B1_Mus2 SINE Alu -2 145 1 5 1710 550 258 38 0 chr4 147523146 147523278 -8106842 + RSINE1 SINE B4 12 148 -17 5 1710 257 246 0 55 chr4 147523990 147524063 -8106057 + B4A SINE B4 106 174 -118 5 1710 319 316 0 0 chr4 147524108 147524184 -8105936 - ID4_ SINE ID 0 83 8 5 1710 432 238 0 28 chr4 147524233 147524341 -8105779 + PB1 SINE Alu 21 125 -2 5 1710 195 69 0 0 chr4 147524345 147524374 -8105746 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1710 484 256 97 83 chr4 147524917 147525134 -8104986 + B4 SINE B4 4 223 -69 6 1710 1001 50 7 14 chr4 147524993 147525135 -8104985 + B1_Mus1 SINE Alu 7 147 -1 6 1710 222 118 0 0 chr4 147525147 147525181 -8104939 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1710 212 0 36 0 chr4 147525376 147525404 -8104716 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 6 1710 222 260 0 0 chr4 147525416 147525466 -8104654 + ID2 SINE ID 21 70 -13 6 1710 609 159 118 8 chr4 147526339 147526466 -8103654 - B1_Mur4 SINE Alu 0 150 10 6 1710 441 242 98 93 chr4 147526341 147526546 -8103574 - B4 SINE B4 -69 223 18 6 1710 636 35 0 12 chr4 147527811 147527897 -8102223 + B1_Mus2 SINE Alu 63 147 0 6 1710 189 0 26 77 chr4 147527897 147527936 -8102184 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1710 932 195 167 5 chr4 147527964 147528150 -8101970 + B3 SINE B2 1 216 0 6 1710 625 248 88 13 chr4 147528176 147528335 -8101785 + ID_B1 SINE B4 2 172 -52 7 1710 414 282 0 68 chr4 147528251 147528369 -8101751 + PB1D10 SINE Alu 8 117 0 7 1710 631 212 172 42 chr4 147528369 147528561 -8101559 + ID_B1 SINE B4 8 224 0 7 1710 22 56 0 0 chr4 147528565 147528601 -8101519 + AT_rich Low_complexity Low_complexity 1 36 0 7 1710 2819 131 50 22 chr4 147528786 147529246 -8100874 - MT2C_Mm LTR ERVL 0 475 3 7 1710 754 125 81 27 chr4 147529363 147529511 -8100609 - B2_Mm2 SINE B2 0 195 40 7 1710 345 308 0 32 chr4 147529510 147529604 -8100516 - B1_Mus1 SINE Alu -57 91 1 7 1710 249 308 43 145 chr4 147529604 147529697 -8100423 - ID SINE ID -148 76 3 7 1710 851 259 5 5 chr4 147529827 147530021 -8100099 - B3 SINE B2 -6 210 17 7 1710 230 301 26 52 chr4 147530047 147530124 -8099996 - ID4_ SINE ID 0 83 9 7 1710 646 191 53 8 chr4 147531154 147531286 -8098834 + B1F1 SINE Alu 10 147 -2 8 1710 245 207 35 0 chr4 147531283 147531341 -8098779 + RSINE1 SINE B4 1 60 -105 8 1710 1263 40 0 0 chr4 147531524 147531672 -8098448 + B1_Mus1 SINE Alu 1 148 0 8 1710 438 179 0 45 chr4 147531706 147531794 -8098326 + B1_Mur2 SINE Alu 36 119 -30 8 1710 305 66 66 0 chr4 147531925 147531986 -8098134 + (TGGGGG)n Simple_repeat Simple_repeat 1 65 0 8 1710 330 290 78 20 chr4 147532258 147532360 -8097760 - PB1D10 SINE Alu -1 116 9 8 1710 255 233 206 0 chr4 147532377 147532450 -8097670 - ID_B1 SINE B4 -4 220 133 8 1710 247 348 0 26 chr4 147532471 147532586 -8097534 + MIR SINE MIR 118 229 -33 8 1710 22 0 0 0 chr4 147534707 147534729 -8095391 + GC_rich Low_complexity Low_complexity 1 22 0 8 1710 450 83 0 0 chr4 147536031 147536103 -8094017 + (TCTG)n Simple_repeat Simple_repeat 4 75 0 8 1710 203 167 0 0 chr4 147536669 147536705 -8093415 - MIRc SINE MIR -119 149 114 9 1710 1342 7 0 0 chr4 147536954 147537101 -8093019 - B1_Mus2 SINE Alu 0 147 1 9 1710 1459 66 22 0 chr4 147537108 147537290 -8092830 - B2_Mm2 SINE B2 -8 187 2 9 1710 181 320 191 25 chr4 147537312 147537511 -8092609 + MIR SINE MIR 17 248 -14 9 1710 414 0 0 0 chr4 147537898 147537944 -8092176 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1710 630 0 0 0 chr4 147537944 147538013 -8092107 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1710 213 250 39 0 chr4 147538023 147538075 -8092045 - B1_Mur4 SINE Alu -65 85 32 9 1710 250 271 0 0 chr4 147538215 147538300 -8091820 + GA-rich Low_complexity Low_complexity 2 86 0 9 1710 279 0 0 0 chr4 147539480 147539511 -8090609 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1710 357 226 142 0 chr4 147540417 147540523 -8089597 + L2a LINE L2 3303 3423 -3 9 1710 588 179 0 0 chr4 147540946 147541058 -8089062 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 1710 513 0 0 0 chr4 147541469 147541526 -8088594 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1710 546 237 59 7 chr4 147541533 147541669 -8088451 - B3 SINE B2 -64 152 10 1 1710 183 139 0 0 chr4 147541949 147541985 -8088135 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1710 1693 21 5 0 chr4 147542297 147542489 -8087631 - B2_Mm1a SINE B2 0 193 1 1 1710 243 246 53 40 chr4 147542811 147542887 -8087233 + 4.5SRNA scRNA scRNA 13 89 -5 1 1710 539 188 0 20 chr4 147542833 147542931 -8087189 + B1F2 SINE Alu 41 136 -13 1 1710 204 40 0 0 chr4 147542931 147542956 -8087164 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1710 762 214 14 72 chr4 147543032 147543239 -8086881 - B3A SINE B2 -3 195 1 1 1710 309 183 0 0 chr4 147543242 147543302 -8086818 + CT-rich Low_complexity Low_complexity 1 60 0 1 1710 1383 41 0 0 chr4 147543302 147543472 -8086648 + (TTTC)n Simple_repeat Simple_repeat 1 170 0 1 1710 204 329 0 54 chr4 147543482 147543556 -8086564 - MIR SINE MIR -142 120 51 1 1710 253 298 171 20 chr4 147543594 147543793 -8086327 - L2a LINE L2 -223 3203 2975 1 1710 305 277 68 34 chr4 147544089 147544235 -8085885 + B4 SINE B4 70 220 -72 1 1710 711 114 7 58 chr4 147544109 147544248 -8085872 + B1_Mur3 SINE Alu 9 140 -9 1 1710 652 241 12 30 chr4 147544331 147544498 -8085622 - MTE2b LTR MaLR -189 190 27 1 1710 1017 183 118 0 chr4 147544817 147545003 -8085117 - B3 SINE B2 -4 212 5 1 1710 269 331 7 110 chr4 147545209 147545355 -8084765 - B1_Mur3 SINE Alu -18 131 1 1 1710 446 232 152 0 chr4 147545231 147545356 -8084764 - ID_B1 SINE B4 0 224 81 1 1710 492 224 20 95 chr4 147546046 147546194 -8083926 + B1F SINE Alu 13 149 0 1 1710 287 264 0 53 chr4 147546202 147546278 -8083842 + ID4 SINE ID 2 73 -10 1 1710 1608 27 0 21 chr4 147546689 147546879 -8083241 - B2_Mm1a SINE B2 -6 187 2 1 1710 278 321 98 0 chr4 147547352 147547464 -8082656 - L2b LINE L2 -14 3361 3239 1 1710 201 176 0 0 chr4 147547844 147547878 -8082242 + A-rich Low_complexity Low_complexity 1 34 0 1 1710 209 321 0 0 chr4 147548375 147548428 -8081692 - MIRc SINE MIR -143 125 73 1 1710 221 276 0 0 chr4 147548562 147548620 -8081500 + MIRc SINE MIR 76 133 -135 1 1710 2521 220 43 10 chr4 147548727 147549241 -8080879 - MT2A LTR ERVL -2 531 1 1 1710 314 336 59 17 chr4 147549303 147549421 -8080699 - RSINE1 SINE B4 0 165 43 1 1710 186 43 0 0 chr4 147550875 147550898 -8079222 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1710 1635 27 21 0 chr4 147550977 147551164 -8078956 - B2_Mm1a SINE B2 -1 192 2 1 1710 732 256 91 0 chr4 147551167 147551366 -8078754 - ID_B1 SINE B4 0 224 8 1 1710 350 221 0 0 chr4 147551693 147551761 -8078359 - ID_B1 SINE B4 -113 111 44 1 1710 1144 221 0 31 chr4 147552434 147552658 -8077462 + ID_B1 SINE B4 1 217 -7 1 1710 923 226 118 12 chr4 147552665 147552911 -8077209 + B4A SINE B4 5 276 -16 1 1710 415 256 83 0 chr4 147553420 147553541 -8076579 + MER63B DNA AcHobo 279 409 -27 1 1710 324 70 0 0 chr4 147554091 147554134 -8075986 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1710 503 248 0 0 chr4 147554168 147554269 -8075851 - B4 SINE B4 -87 205 105 1 1710 1029 228 10 0 chr4 147554311 147554517 -8075603 - B3 SINE B2 -6 210 3 1 1710 237 82 41 0 chr4 147554520 147554569 -8075551 - B2_Mm1t SINE B2 -5 188 138 1 1710 398 77 14 18 chr4 147554559 147554625 -8075495 - B2_Mm2 SINE B2 -82 116 46 1 1710 1101 109 11 22 chr4 147554658 147554836 -8075284 - B2_Mm1t SINE B2 -16 177 2 1 1710 304 206 30 80 chr4 147554836 147554927 -8075193 - B4 SINE B4 -199 93 8 1 1710 394 235 30 10 chr4 147555090 147555189 -8074931 - PB1D7 SINE Alu -2 118 18 1 1710 279 286 0 45 chr4 147555111 147555221 -8074899 - ID_B1 SINE B4 -48 176 72 1 1710 438 75 0 0 chr4 147555399 147555466 -8074654 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1 1710 1095 83 0 14 chr4 147555466 147555601 -8074519 - B1_Mus2 SINE Alu -12 135 2 1 1710 221 313 0 0 chr4 147555619 147555686 -8074434 + B4A SINE B4 83 149 -143 1 1710 299 166 8 0 chr4 147555629 147555694 -8074426 + PB1D7 SINE Alu 8 75 -42 1 1710 198 91 0 0 chr4 147555989 147556022 -8074098 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 1710 916 179 0 0 chr4 147556023 147556168 -8073952 - B1_Mus1 SINE Alu -2 146 2 1 1710 374 299 67 0 chr4 147556954 147557088 -8073032 - RSINE1 SINE B4 -19 146 4 1 1710 586 248 111 10 chr4 147557088 147557287 -8072833 - B4A SINE B4 -65 227 8 1 1710 239 200 33 0 chr4 147557504 147557564 -8072556 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 1 1710 486 46 0 0 chr4 147557565 147557630 -8072490 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1710 549 42 0 0 chr4 147557630 147557701 -8072419 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1710 275 250 51 26 chr4 147557707 147557785 -8072335 - B3 SINE B2 -67 149 70 1 1710 414 218 91 0 chr4 147557820 147557930 -8072190 - B1_Mur3 SINE Alu 0 149 30 1 1710 495 0 0 0 chr4 147557957 147558012 -8072108 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1710 28 0 0 0 chr4 147558039 147558067 -8072053 + AT_rich Low_complexity Low_complexity 1 28 0 1 1710 355 305 21 0 chr4 147559201 147559296 -8070824 + ID_B1 SINE B4 127 223 -1 1 1710 2085 89 15 40 chr4 147559607 147559934 -8070186 - ORR1A2 LTR MaLR -8 319 1 1 1710 346 315 60 40 chr4 147560680 147560829 -8069291 + MIR SINE MIR 111 262 0 1 1710 457 207 0 0 chr4 147561314 147561396 -8068724 - B1_Mur1 SINE Alu -26 123 42 1 1710 585 273 13 7 chr4 147561416 147561567 -8068553 - ID_B1 SINE B4 -72 152 1 1 1710 193 278 47 12 chr4 147562023 147562113 -8068007 + MIR3 SINE MIR 85 187 -89 1 1710 211 286 202 0 chr4 147562519 147562603 -8067517 + MIR SINE MIR 27 127 -135 1 1710 341 137 0 0 chr4 147562603 147562654 -8067466 + RLTR23 LTR ERV1 1 51 -379 1 1710 2147 88 13 6 chr4 147562658 147563056 -8067064 - ORR1A2 LTR MaLR -8 386 1 1 1710 1401 142 136 68 chr4 147563071 147563251 -8066869 + RLTR23 LTR ERV1 75 293 -137 1 1710 1426 70 32 0 chr4 147563251 147563436 -8066684 + B2_Mm2 SINE B2 1 191 -4 1 1710 1401 142 136 68 chr4 147563436 147563565 -8066555 + RLTR23 LTR ERV1 294 405 -25 1 1710 230 176 0 19 chr4 147564450 147564502 -8065618 + CT-rich Low_complexity Low_complexity 3 53 0 1 1710 21 57 0 0 chr4 147564768 147564803 -8065317 + AT_rich Low_complexity Low_complexity 1 35 0 1 1710 1321 168 5 5 chr4 147565442 147565652 -8064468 + B3 SINE B2 5 214 -2 1 1710 972 240 34 0 chr4 147565665 147565873 -8064247 + B3 SINE B2 2 216 0 1 1710 1289 104 33 6 chr4 147565877 147566060 -8064060 - B2_Mm2 SINE B2 -7 188 1 1 1710 249 262 72 58 chr4 147566073 147566211 -8063909 + Lx8 LINE L1 7332 7471 -2 1 1710 263 233 13 64 chr4 147566215 147566293 -8063827 + B4A SINE B4 219 292 0 1 1710 484 282 44 45 chr4 147566443 147566678 -8063442 - MER113 DNA MER1_type -31 490 44 1 1710 235 366 65 0 chr4 147567030 147567153 -8062967 + MIR3 SINE MIR 5 135 -73 1 1710 1026 136 2 0 chr4 147568352 147568773 -8061347 + (TG)n Simple_repeat Simple_repeat 1 422 0 1 1710 939 314 78 45 chr4 147569570 147569994 -8060126 + ORSL-2b DNA Tip100 31 468 -40 1 1710 593 152 0 0 chr4 147570002 147570101 -8060019 + RSINE1 SINE B4 2 100 -65 1 1710 1418 164 0 4 chr4 147571126 147571352 -8058768 - URR1B DNA MER1_type 0 225 1 1 1710 417 288 109 57 chr4 147572086 147572296 -8057824 + ID_B1 SINE B4 1 221 -3 1 1710 508 213 0 0 chr4 147572329 147572423 -8057697 + B1F2 SINE Alu 46 139 -10 1 1710 529 137 17 0 chr4 147572443 147572560 -8057560 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 1 1710 207 311 54 0 chr4 147572598 147572672 -8057448 - L2a LINE L2 -274 3152 3075 1 1710 775 259 97 13 chr4 147573493 147573713 -8056407 + ID_B1 SINE B4 11 246 -46 1 1710 624 194 0 0 chr4 147573714 147573843 -8056277 + GA-rich Low_complexity Low_complexity 2 130 0 1 1710 1117 101 6 6 chr4 147573846 147574026 -8056094 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1710 360 274 10 21 chr4 147574031 147574128 -8055992 + RSINE1 SINE B4 3 98 -67 1 1710 516 68 0 0 chr4 147574162 147574235 -8055885 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1710 628 276 72 5 chr4 147574279 147574472 -8055648 - B3 SINE B2 -7 209 4 1 1710 930 66 0 0 chr4 147575620 147575742 -8054378 + (TCCC)n Simple_repeat Simple_repeat 3 124 0 1 1710 236 338 39 0 chr4 147575742 147575819 -8054301 + polypyrimidine Low_complexity Low_complexity 1 80 0 1 1710 686 291 5 51 chr4 147575821 147576038 -8054082 - ID_B1 SINE B4 -16 208 2 1 1710 537 16 0 0 chr4 147576076 147576138 -8053982 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1710 26 0 0 0 chr4 147576249 147576275 -8053845 + AT_rich Low_complexity Low_complexity 1 26 0 1 1710 1043 188 32 46 chr4 147576275 147576492 -8053628 - B3 SINE B2 0 216 3 1 1710 183 205 0 0 chr4 147576747 147576786 -8053334 + GA-rich Low_complexity Low_complexity 2 40 0 1 1710 257 356 17 17 chr4 147576808 147576925 -8053195 - MLT1H2 LTR MaLR -4 485 369 1 1710 1522 217 168 66 chr4 147577076 147577559 -8052561 - MT2A LTR ERVL -1 532 1 1 1710 981 229 174 40 chr4 147577869 147578196 -8051924 + MTE2a LTR MaLR 1 371 -8 2 1710 254 321 81 37 chr4 147578451 147578587 -8051533 - MLT1H2 LTR MaLR -312 243 102 1 1710 205 269 44 15 chr4 147578627 147578695 -8051425 + MIRc SINE MIR 4 73 -195 2 1710 567 216 22 29 chr4 147579307 147579445 -8050675 + B1F1 SINE Alu 10 146 -3 2 1710 1133 269 48 7 chr4 147579451 147579724 -8050396 + B4 SINE B4 1 284 -8 2 1710 334 224 78 13 chr4 147579794 147579871 -8050249 + ID4_ SINE ID 2 83 0 2 1710 1827 155 138 3 chr4 147579916 147580279 -8049841 + MTC LTR MaLR 3 414 -7 2 1710 180 0 0 0 chr4 147581405 147581425 -8048695 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 2 1710 2163 83 25 13 chr4 147581672 147581988 -8048132 + ORR1A2 LTR MaLR 6 325 -2 2 1710 375 318 39 0 chr4 147582060 147582214 -8047906 + B3 SINE B2 57 216 0 2 1710 493 189 0 0 chr4 147582251 147582341 -8047779 - RSINE1 SINE B4 -31 134 45 2 1710 239 133 22 0 chr4 147582430 147582475 -8047645 + GA-rich Low_complexity Low_complexity 4 49 0 2 1710 319 309 112 16 chr4 147582611 147582736 -8047384 + B4 SINE B4 41 177 -115 2 1710 418 180 26 3 chr4 147582661 147582745 -8047375 + B1F SINE Alu 12 95 -54 2 1710 620 209 0 0 chr4 147582806 147582921 -8047199 - RSINE1 SINE B4 -40 125 11 2 1710 410 0 20 0 chr4 147583485 147583535 -8046585 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 2 1710 704 217 36 103 chr4 147583536 147583731 -8046389 - B3A SINE B2 -16 182 1 2 1710 332 294 104 8 chr4 147583732 147583873 -8046247 - B3A SINE B2 -2 196 59 2 1710 231 167 0 0 chr4 147583883 147583925 -8046195 + CT-rich Low_complexity Low_complexity 3 44 0 2 1710 1428 78 16 10 chr4 147584719 147584912 -8045208 - B2_Mm2 SINE B2 0 195 2 2 1710 567 211 31 8 chr4 147585184 147585313 -8044807 - RSINE1 SINE B4 -31 134 3 2 1710 303 335 42 18 chr4 147586053 147586231 -8043889 - MIRb SINE MIR -9 199 21 2 1710 507 270 32 26 chr4 147586515 147586671 -8043449 - RSINE1 SINE B4 -7 158 2 2 1710 983 145 0 0 chr4 147586845 147586980 -8043140 + B1_Mus2 SINE Alu 2 136 -11 2 1710 509 0 16 0 chr4 147586980 147587041 -8043079 + (CAAT)n Simple_repeat Simple_repeat 2 63 0 2 1711 187 274 40 16 chr4 147588717 147588802 -8041318 - MIRc SINE MIR -138 130 40 2 1711 368 364 23 0 chr4 147589497 147589629 -8040491 - MER91B DNA Tip100 -52 138 4 2 1711 450 0 0 0 chr4 147589886 147589936 -8040184 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1711 434 289 35 76 chr4 147589996 147590168 -8039952 + RSINE1 SINE B4 1 165 0 2 1711 207 218 0 0 chr4 147590187 147590242 -8039878 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1711 926 234 0 82 chr4 147590272 147590491 -8039629 + B3 SINE B2 2 202 -14 2 1711 736 253 0 0 chr4 147590507 147590661 -8039459 + B3A SINE B2 1 154 -44 2 1711 558 0 0 0 chr4 147590661 147590723 -8039397 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1711 257 134 0 128 chr4 147590948 147591144 -8038976 + CT-rich Low_complexity Low_complexity 3 173 0 2 1711 308 79 0 136 chr4 147591188 147591364 -8038756 + C-rich Low_complexity Low_complexity 4 155 0 2 1711 304 194 52 31 chr4 147591377 147591473 -8038647 + CT-rich Low_complexity Low_complexity 2 99 0 2 1711 229 234 0 0 chr4 147591700 147591747 -8038373 - MLT2B5 LTR ERVL -564 153 107 2 1711 236 297 44 18 chr4 147591817 147591930 -8038190 - Tigger7 DNA MER2_type -108 2383 2268 2 1711 316 239 99 18 chr4 147592785 147592896 -8037224 - MIRc SINE MIR -65 203 84 2 1711 235 278 98 36 chr4 147592937 147593049 -8037071 + MIRb SINE MIR 41 159 -109 2 1711 785 292 33 40 chr4 147593331 147593606 -8036514 + B4A SINE B4 2 274 -18 2 1711 645 224 8 0 chr4 147594160 147594285 -8035835 - ID_B1 SINE B4 -5 219 94 2 1711 1377 146 18 0 chr4 147594452 147594672 -8035448 + URR1B DNA MER1_type 2 225 0 2 1711 577 291 145 4 chr4 147595838 147596100 -8034020 - L1MB7 LINE L1 -148 6036 5738 2 1711 287 282 0 14 chr4 147596103 147596247 -8033873 + (TATG)n Simple_repeat Simple_repeat 3 144 0 2 1711 223 122 41 0 chr4 147596389 147596438 -8033682 + CT-rich Low_complexity Low_complexity 1 51 0 2 1711 820 231 80 20 chr4 147596513 147596712 -8033408 - ID_B1 SINE B4 -8 216 6 2 1711 261 210 0 0 chr4 147598001 147598063 -8032057 + A-rich Low_complexity Low_complexity 1 62 0 2 1711 506 273 49 6 chr4 147598063 147598225 -8031895 + ID_B1 SINE B4 1 169 -55 2 1711 699 175 13 7 chr4 147598297 147598452 -8031668 + GA-rich Low_complexity Low_complexity 1 156 0 2 1711 426 294 119 0 chr4 147598483 147598609 -8031511 - MER70B LTR ERVL -310 268 128 2 1711 195 42 0 0 chr4 147599106 147599130 -8030990 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1711 299 104 0 20 chr4 147599154 147599203 -8030917 - B2_Mm2 SINE B2 -99 96 49 2 1711 1461 56 22 0 chr4 147599249 147599428 -8030692 - B2_Mm2 SINE B2 -12 183 1 2 1711 369 148 0 0 chr4 147599435 147599516 -8030604 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1711 286 125 45 0 chr4 147599519 147599575 -8030545 - B1_Mur4 SINE Alu -1 149 57 2 1711 1076 256 28 60 chr4 147599763 147600046 -8030074 + B4 SINE B4 1 274 -18 2 1711 270 0 0 0 chr4 147600071 147600101 -8030019 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1711 592 263 14 81 chr4 147600134 147600200 -8029920 + B3A SINE B2 1 66 -132 2 1711 1183 137 539 4 chr4 147600200 147600471 -8029649 - MTD LTR MaLR -3 416 1 2 1711 592 263 14 81 chr4 147600471 147600615 -8029505 + B3A SINE B2 67 197 -1 2 1711 624 291 121 108 chr4 147601325 147601647 -8028473 - ORR1E LTR MaLR -2 377 39 2 1711 799 269 20 20 chr4 147601968 147601987 -8028133 - B3A SINE B2 -1 197 182 2 1711 450 65 0 0 chr4 147601987 147602049 -8028071 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1711 799 269 20 20 chr4 147602049 147602226 -8027894 - B3A SINE B2 -17 181 1 2 1711 801 263 78 0 chr4 147602226 147602432 -8027688 - B4 SINE B4 -61 231 9 2 1711 1237 139 55 0 chr4 147603053 147603254 -8026866 + B3 SINE B2 5 216 0 2 1711 201 308 15 0 chr4 147603297 147603362 -8026758 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1711 982 180 22 22 chr4 147603364 147603546 -8026574 - B3A SINE B2 -15 183 2 2 1711 265 361 48 13 chr4 147604107 147604337 -8025783 - L1M5 LINE L1 -324 5838 5601 2 1711 240 35 0 0 chr4 147604823 147604852 -8025268 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1711 384 316 118 48 chr4 147604870 147605056 -8025064 - B4A SINE B4 -8 284 86 2 1711 408 71 0 0 chr4 147605325 147605381 -8024739 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1711 1001 110 7 0 chr4 147605467 147605621 -8024499 + URR1A DNA MER1_type 70 224 -2 2 1711 322 332 137 34 chr4 147607945 147608207 -8021913 - B4 SINE B4 -3 289 1 2 1711 622 303 27 75 chr4 147608268 147608561 -8021559 - MLT1B LTR MaLR -106 284 6 2 1711 487 302 26 39 chr4 147608565 147608720 -8021400 - MLT1B LTR MaLR -235 155 3 2 1711 276 314 201 21 chr4 147608720 147608954 -8021166 + MLT1H LTR MaLR 202 477 -72 2 1711 794 82 205 0 chr4 147609004 147609126 -8020994 - B1_Mus1 SINE Alu -1 147 1 2 1711 674 248 62 38 chr4 147609152 147609181 -8020939 - B3 SINE B2 0 216 189 2 1711 382 18 36 0 chr4 147609181 147609236 -8020884 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1711 414 0 0 0 chr4 147609236 147609281 -8020839 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1711 755 248 62 38 chr4 147609281 147609460 -8020660 - B3A SINE B2 -28 188 2 2 1711 257 234 0 0 chr4 147609462 147609526 -8020594 + MLT1H LTR MaLR 427 549 0 2 1711 257 357 40 93 chr4 147609533 147609780 -8020340 + MT2B LTR ERVL 55 288 -313 2 1711 516 282 55 33 chr4 147609633 147609841 -8020279 + ID_B1 SINE B4 66 275 -17 2 1711 1094 199 47 26 chr4 147609854 147610114 -8020006 + ORR1D1 LTR MaLR 1 222 -152 2 1711 231 283 41 52 chr4 147610505 147610602 -8019518 - MLT1G1 LTR MaLR -13 566 471 2 1711 261 307 115 25 chr4 147610904 147611061 -8019059 - MIRb SINE MIR -33 235 65 2 1711 414 0 0 0 chr4 147611635 147611681 -8018439 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1711 185 274 0 0 chr4 147612858 147612909 -8017211 + MIRc SINE MIR 104 154 -114 2 1711 831 133 86 0 chr4 147613562 147613690 -8016430 + B1_Mur3 SINE Alu 2 140 -9 2 1711 456 312 40 34 chr4 147613722 147613898 -8016222 + MLT1B LTR MaLR 21 197 -193 2 1711 210 226 121 61 chr4 147614998 147615097 -8015023 + MIRc SINE MIR 43 147 -121 2 1711 1335 45 0 0 chr4 147615736 147615938 -8014182 + (GA)n Simple_repeat Simple_repeat 1 202 0 2 1711 562 285 55 183 chr4 147616192 147616608 -8013512 + MTE2b LTR MaLR 1 363 -16 2 1711 580 280 44 6 chr4 147617813 147617971 -8012149 - RSINE1 SINE B4 0 165 2 2 1711 240 35 0 0 chr4 147618859 147618888 -8011232 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1711 575 221 118 34 chr4 147618985 147619191 -8010929 + L1MB3 LINE L1 5807 6024 -154 2 1711 490 214 222 0 chr4 147619222 147619339 -8010781 - B1_Mur1 SINE Alu -6 143 1 2 1711 692 280 31 128 chr4 147619376 147619685 -8010435 + MTEa LTR MaLR 1 293 -86 2 1711 886 244 83 8 chr4 147619739 147619991 -8010129 + MTEb-int LTR MaLR 1 271 -1309 2 1711 238 257 0 149 chr4 147620003 147620090 -8010030 + MTEb-int LTR MaLR 242 315 -1265 2 1711 355 269 31 167 chr4 147620091 147620283 -8009837 + MTE2a LTR MaLR 1 166 -213 2 1711 959 226 11 0 chr4 147620297 147620487 -8009633 + B3 SINE B2 1 192 -24 2 1711 369 0 0 0 chr4 147620490 147620531 -8009589 + (CTA)n Simple_repeat Simple_repeat 1 41 0 2 1711 774 240 47 42 chr4 147620544 147620729 -8009391 + MTE2a LTR MaLR 166 356 -23 2 1711 2211 136 165 6 chr4 147620729 147621092 -8009028 + MTC LTR MaLR 1 421 0 3 1711 774 240 47 42 chr4 147621092 147621119 -8009001 + MTE2a LTR MaLR 357 378 -1 2 1711 1132 262 182 59 chr4 147621119 147621646 -8008474 + MTEb-int LTR MaLR 322 913 -667 2 1711 514 210 147 21 chr4 147621636 147621827 -8008293 + MTEb-int LTR MaLR 1338 1552 -28 2 1711 297 288 219 67 chr4 147621827 147622131 -8007989 + MTEb LTR MaLR 12 379 0 2 1711 778 162 90 62 chr4 147622409 147622587 -8007533 - B2_Mm2 SINE B2 -8 187 5 3 1711 1016 129 7 0 chr4 147622607 147622754 -8007366 - B1_Mus1 SINE Alu 0 148 1 3 1711 289 0 0 47 chr4 147625273 147625316 -8004804 + (CTGGGG)n Simple_repeat Simple_repeat 6 46 0 3 1711 1079 234 32 177 chr4 147627198 147627634 -8002486 + MTE2a LTR MaLR 7 379 0 3 1711 441 285 4 17 chr4 147628026 147628185 -8001935 - MIRc SINE MIR -79 197 43 3 1711 201 329 43 0 chr4 147629684 147629754 -8000366 - MIRb SINE MIR -79 189 117 3 1711 236 140 40 0 chr4 147631140 147631190 -7998930 + G-rich Low_complexity Low_complexity 6 57 0 3 1711 213 270 16 0 chr4 147633496 147633559 -7996561 + GA-rich Low_complexity Low_complexity 1 64 0 3 1711 362 329 84 18 chr4 147633572 147633739 -7996381 + MIRb SINE MIR 17 194 -74 3 1711 637 232 45 62 chr4 147635388 147635567 -7994553 + MER5B DNA MER1_type 1 176 -2 3 1711 243 146 0 0 chr4 147635745 147635786 -7994334 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1711 550 360 20 43 chr4 147635787 147636086 -7994034 - B4A SINE B4 0 292 1 3 1711 409 176 82 150 chr4 147636115 147636168 -7993952 - B1_Mur1 SINE Alu -11 138 97 3 1711 522 0 0 0 chr4 147636168 147636226 -7993894 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1711 409 176 82 150 chr4 147636226 147636319 -7993801 - B1_Mur1 SINE Alu -53 96 2 3 1711 806 263 27 0 chr4 147636332 147636518 -7993602 - B3A SINE B2 -7 191 1 3 1711 703 218 147 11 chr4 147636624 147636814 -7993306 + B3 SINE B2 1 216 0 3 1711 461 283 153 15 chr4 147637244 147637506 -7992614 + L1ME2 LINE L1 1652 1949 -4451 3 1711 225 275 146 24 chr4 147637583 147637747 -7992373 + L1ME2 LINE L1 2067 2250 -4150 3 1711 428 323 13 36 chr4 147637755 147637980 -7992140 + L1ME2 LINE L1 4280 4499 -1820 3 1711 386 273 0 0 chr4 147638133 147638210 -7991910 - ID4_ SINE ID -3 80 4 3 1711 362 277 74 37 chr4 147638232 147638367 -7991753 - B1F SINE Alu -9 140 1 3 1711 257 245 74 11 chr4 147638369 147638464 -7991656 + L1ME2 LINE L1 4779 4879 -1440 3 1711 388 253 0 0 chr4 147638490 147638573 -7991547 + BC1_Mm scRNA scRNA 9 91 -61 3 1711 1366 267 52 69 chr4 147638847 147638993 -7991127 + Lx8 LINE L1 6860 7006 -467 3 1711 932 171 128 5 chr4 147638993 147639035 -7991085 - B3 SINE B2 -1 215 173 3 1711 1105 33 0 58 chr4 147639035 147639226 -7990894 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1711 932 171 128 5 chr4 147639226 147639371 -7990749 - B3 SINE B2 -44 172 5 3 1711 1366 267 52 69 chr4 147639371 147639719 -7990401 + Lx8 LINE L1 7007 7346 -127 3 1711 198 193 0 0 chr4 147639726 147639783 -7990337 + (TGG)n Simple_repeat Simple_repeat 1 57 0 3 1711 394 186 47 0 chr4 147639799 147639885 -7990235 + Lx8 LINE L1 7384 7473 0 3 1711 570 330 82 70 chr4 147640135 147640215 -7989905 + L1ME2 LINE L1 5563 5642 -710 3 1711 486 0 0 0 chr4 147640215 147640269 -7989851 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 3 1711 570 330 82 70 chr4 147640269 147640315 -7989805 + L1ME2 LINE L1 5643 5663 -689 3 1711 806 244 271 3 chr4 147640315 147640368 -7989752 + MTD LTR MaLR 3 59 -360 3 1711 423 0 0 0 chr4 147640368 147640415 -7989705 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 3 1711 806 244 271 3 chr4 147640415 147640690 -7989430 + MTD LTR MaLR 60 418 -1 3 1711 580 330 82 70 chr4 147640690 147641133 -7988987 + L1ME2 LINE L1 5664 6140 -212 3 1711 769 273 34 0 chr4 147641137 147641342 -7988778 + B3 SINE B2 1 212 -4 3 1711 980 197 34 0 chr4 147641690 147641868 -7988252 + B3A SINE B2 1 184 -14 3 1711 25 51 0 0 chr4 147641900 147641939 -7988181 + AT_rich Low_complexity Low_complexity 1 39 0 3 1711 834 231 12 0 chr4 147641980 147642140 -7987980 + RSINE1 SINE B4 3 164 -1 3 1711 405 153 0 0 chr4 147642149 147642221 -7987899 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1711 785 329 45 29 chr4 147642246 147642803 -7987317 + L1MEg LINE L1 1257 1822 -4262 3 1711 309 109 0 0 chr4 147642958 147643004 -7987116 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 3 1711 248 247 153 0 chr4 147643015 147643100 -7987020 - L2a LINE L2 0 3426 3329 3 1711 683 255 43 25 chr4 147643125 147643286 -7986834 - RSINE1 SINE B4 0 165 2 3 1711 684 0 0 0 chr4 147643415 147643491 -7986629 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1711 351 0 0 0 chr4 147643492 147643531 -7986589 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1711 409 211 63 0 chr4 147643535 147643630 -7986490 - B3A SINE B2 -38 160 60 3 1711 483 208 164 1 chr4 147643742 147643870 -7986250 - B4A SINE B4 -144 148 1 3 1711 877 208 70 16 chr4 147643907 147644093 -7986027 - B3 SINE B2 -19 197 2 3 1711 244 299 11 11 chr4 147644131 147644219 -7985901 - MIR SINE MIR -63 145 58 3 1711 1270 228 118 3 chr4 147645016 147645337 -7984783 + MTD LTR MaLR 12 369 -50 3 1711 865 182 204 0 chr4 147646731 147646907 -7983213 + B3 SINE B2 1 212 -4 3 1711 405 0 0 0 chr4 147647003 147647048 -7983072 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1711 211 339 147 9 chr4 147647188 147647304 -7982816 + MIRb SINE MIR 23 154 -114 3 1711 480 246 87 8 chr4 147648132 147648259 -7981861 - RSINE1 SINE B4 -24 141 5 3 1711 671 209 91 7 chr4 147648289 147648443 -7981677 - B3A SINE B2 -16 182 16 3 1711 385 303 42 14 chr4 147648458 147648602 -7981518 - B1_Mus1 SINE Alu 0 148 1 3 1711 592 234 16 0 chr4 147648464 147648588 -7981532 - ID_B1 SINE B4 -6 218 93 3 1711 237 312 25 83 chr4 147648588 147648619 -7981501 + YREP_Mm Unknown Unknown 182 327 -1485 3 1711 189 0 0 0 chr4 147649315 147649336 -7980784 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3 1711 468 0 0 0 chr4 147649342 147649394 -7980726 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1711 204 297 90 33 chr4 147649685 147649807 -7980313 - MIRb SINE MIR -43 225 97 3 1711 322 247 68 0 chr4 147649933 147650006 -7980114 + ID4_ SINE ID 6 83 0 3 1711 284 205 12 60 chr4 147650626 147650709 -7979411 + MIRc SINE MIR 11 92 -176 3 1711 655 261 39 0 chr4 147650815 147650968 -7979152 - RSINE1 SINE B4 -6 159 1 3 1711 273 336 51 8 chr4 147651661 147651778 -7978342 + MIRc SINE MIR 24 145 -123 3 1711 24 0 0 0 chr4 147653038 147653062 -7977058 + AT_rich Low_complexity Low_complexity 1 24 0 3 1711 389 250 6 0 chr4 147653928 147654084 -7976036 + (TCCA)n Simple_repeat Simple_repeat 4 160 0 3 1711 1106 117 6 0 chr4 147654099 147654278 -7975842 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 3 1711 936 164 0 0 chr4 147654302 147654479 -7975641 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 3 1711 218 280 0 8 chr4 147654492 147654618 -7975502 + (TCCA)n Simple_repeat Simple_repeat 2 126 0 3 1711 802 201 173 0 chr4 147655550 147655729 -7974391 + B3 SINE B2 1 210 -6 3 1711 459 301 26 48 chr4 147656960 147657188 -7972932 + MIRb SINE MIR 36 263 -5 3 1711 207 351 26 0 chr4 147657365 147657442 -7972678 + MIRm SINE MIR 70 148 -128 3 1711 22 0 0 0 chr4 147657740 147657762 -7972358 + AT_rich Low_complexity Low_complexity 1 22 0 3 1711 338 296 143 0 chr4 147657762 147657860 -7972260 - PB1D10 SINE Alu 0 117 6 3 1711 299 284 0 121 chr4 147657966 147658090 -7972030 + MT2B LTR ERVL 156 264 -337 3 1711 785 161 0 28 chr4 147657987 147658128 -7971992 + B1_Mus1 SINE Alu 11 147 -1 3 1711 228 35 0 0 chr4 147660476 147660505 -7969615 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 3 1711 306 0 0 0 chr4 147662046 147662080 -7968040 + (CCG)n Simple_repeat Simple_repeat 2 35 0 3 1711 534 232 166 48 chr4 147663058 147663203 -7966917 + RSINE1 SINE B4 2 163 -2 3 1711 375 23 0 0 chr4 147663206 147663250 -7966870 + (CATA)n Simple_repeat Simple_repeat 1 44 0 3 1711 310 262 69 53 chr4 147663494 147663756 -7966364 - RMER17D LTR ERVK -321 568 303 3 1711 369 0 0 0 chr4 147664358 147664399 -7965721 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1711 333 285 0 131 chr4 147664958 147665172 -7964948 + MIRb SINE MIR 46 231 -37 3 1711 290 315 34 62 chr4 147665446 147665622 -7964498 + MIRc SINE MIR 26 196 -72 3 1711 220 345 45 11 chr4 147665770 147665858 -7964262 - MIR SINE MIR -100 108 18 3 1711 807 270 173 0 chr4 147666637 147666874 -7963246 - B4A SINE B4 -13 279 2 3 1711 2872 28 0 0 chr4 147668770 147669092 -7961028 - RLTRETN_Mm LTR ERVK 0 322 1 3 1711 549 96 0 0 chr4 147669391 147669485 -7960635 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1711 270 212 30 15 chr4 147669537 147669604 -7960516 + CT-rich Low_complexity Low_complexity 3 70 0 3 1711 476 252 8 17 chr4 147670224 147670341 -7959779 + PB1D10 SINE Alu 1 116 -1 3 1711 812 159 19 58 chr4 147670345 147670499 -7959621 + B1_Mur4 SINE Alu 3 150 0 3 1711 564 287 14 0 chr4 147670814 147670957 -7959163 + MIR SINE MIR 16 160 -102 3 1711 293 377 0 82 chr4 147671029 147671085 -7959035 - YREP_Mm Unknown Unknown -1470 342 197 3 1711 661 208 0 0 chr4 147671085 147671205 -7958915 + ID_B1 SINE B4 103 222 -2 3 1711 371 269 0 92 chr4 147671249 147671368 -7958752 - MIRb SINE MIR -150 118 11 3 1711 445 269 0 70 chr4 147672614 147672742 -7957378 + B3A SINE B2 2 120 -78 3 1711 626 250 43 43 chr4 147673188 147673351 -7956769 + RSINE1 SINE B4 3 165 0 3 1711 714 203 0 0 chr4 147673357 147673510 -7956610 + (CA)n Simple_repeat Simple_repeat 1 153 0 3 1711 308 163 0 0 chr4 147673510 147673559 -7956561 + HAL1-3A_ME LINE L1 1976 2024 -834 3 1711 656 242 19 95 chr4 147673678 147673770 -7956350 - B3A SINE B2 0 198 117 3 1711 2268 104 3 66 chr4 147673770 147674119 -7956001 + ORR1A2 LTR MaLR 1 327 0 3 1711 656 242 19 95 chr4 147674119 147674236 -7955884 - B3A SINE B2 -82 116 5 3 1711 615 241 107 34 chr4 147674641 147674847 -7955273 - RMER15 LTR ERVL -19 556 336 3 1711 206 146 0 47 chr4 147675143 147675186 -7954934 + L2b LINE L2 3329 3369 -6 3 1711 486 0 0 0 chr4 147675454 147675508 -7954612 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1711 271 213 32 32 chr4 147675656 147675719 -7954401 + MER5A1 DNA MER1_type 1 63 -103 3 1711 1289 217 30 4 chr4 147675725 147675993 -7954127 + B4 SINE B4 2 276 -16 3 1711 430 193 18 18 chr4 147676012 147676123 -7953997 + (CACG)n Simple_repeat Simple_repeat 1 111 0 3 1711 347 354 34 20 chr4 147676206 147676353 -7953767 - MER5B DNA MER1_type -26 152 4 3 1711 313 297 22 11 chr4 147676557 147676649 -7953471 + MER5A DNA MER1_type 97 189 0 4 1711 768 222 0 0 chr4 147676710 147676890 -7953230 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1711 192 77 0 0 chr4 147676904 147676930 -7953190 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1711 780 239 33 16 chr4 147676930 147677113 -7953007 - B3 SINE B2 -30 186 1 4 1711 227 378 55 20 chr4 147678789 147678935 -7951185 - MIRb SINE MIR -81 187 37 4 1711 370 335 33 38 chr4 147679470 147679653 -7950467 - MIR SINE MIR -83 193 10 4 1711 185 281 125 0 chr4 147679721 147679785 -7950335 - MIRb SINE MIR -140 128 57 4 1711 201 224 20 20 chr4 147680083 147680133 -7949987 + MIRb SINE MIR 213 262 -6 4 1711 448 285 150 54 chr4 147681456 147681803 -7948317 - MLT1C LTR MaLR -5 385 44 4 1711 240 229 16 16 chr4 147681919 147681981 -7948139 - MIRc SINE MIR -93 175 114 4 1711 1836 152 70 6 chr4 147681989 147682319 -7947801 - ORR1B2 LTR MaLR -16 351 1 4 1711 477 0 0 0 chr4 147682327 147682380 -7947740 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1711 289 234 0 0 chr4 147682394 147682458 -7947662 + ID4 SINE ID 7 70 -13 4 1711 733 182 18 6 chr4 147682461 147682632 -7947488 + (CATATA)n Simple_repeat Simple_repeat 3 175 0 4 1711 1048 211 123 4 chr4 147682840 147683116 -7947004 + ORR1D2 LTR MaLR 62 370 0 4 1711 211 333 92 20 chr4 147683596 147683694 -7946426 + MIR SINE MIR 110 214 -48 4 1711 207 0 0 0 chr4 147684825 147684848 -7945272 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1711 806 95 0 80 chr4 147684862 147684999 -7945121 - B1_Mus1 SINE Alu -13 135 10 4 1711 739 311 75 88 chr4 147685357 147685798 -7944322 + MLT1D LTR MaLR 19 453 -52 4 1711 233 318 132 41 chr4 147685823 147686089 -7944031 - B4 SINE B4 0 292 3 4 1711 632 254 22 0 chr4 147686100 147686238 -7943882 - ID_B1 SINE B4 -6 218 78 4 1711 255 250 31 12 chr4 147687246 147687326 -7942794 + B1F SINE Alu 2 83 -34 4 1711 903 200 0 0 chr4 147687335 147687589 -7942531 + (CAG)n Simple_repeat Simple_repeat 1 254 0 4 1711 253 265 147 29 chr4 147687795 147687931 -7942189 - MIRb SINE MIR -85 183 32 4 1711 188 261 30 30 chr4 147689377 147689444 -7940676 - MIR SINE MIR -191 71 5 4 1711 276 260 127 91 chr4 147690507 147690617 -7939503 - B4A SINE B4 -120 172 59 4 1711 389 207 12 0 chr4 147690619 147690701 -7939419 + MMETn-int LTR ERVK 4736 4818 -26 4 1711 249 159 0 0 chr4 147690701 147690745 -7939375 + T-rich Low_complexity Low_complexity 1 44 0 4 1711 1904 135 9 65 chr4 147690764 147691105 -7939015 + RLTRETN_Mm LTR ERVK 1 322 0 4 1711 282 254 0 16 chr4 147691105 147691169 -7938951 - B4A SINE B4 -229 63 1 4 1711 302 268 62 0 chr4 147691169 147691281 -7938839 - L1MB3 LINE L1 -42 6141 6023 4 1711 705 239 92 5 chr4 147691553 147691738 -7938382 - ORR1D2 LTR MaLR 0 370 170 4 1711 264 30 0 0 chr4 147691743 147691776 -7938344 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1711 389 236 57 50 chr4 147691788 147691937 -7938183 - ORR1D2 LTR MaLR -187 187 21 4 1711 334 231 0 0 chr4 147693960 147694025 -7936095 + ID4_ SINE ID 9 73 -10 4 1711 676 182 12 12 chr4 147694025 147694186 -7935934 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 4 1711 372 273 7 123 chr4 147694214 147694352 -7935768 - B3 SINE B2 -14 202 81 4 1711 316 291 78 68 chr4 147694389 147694581 -7935539 + MER102a DNA MER1_type 129 322 -8 4 1711 359 228 0 52 chr4 147694794 147694891 -7935229 - ID_B1 SINE B4 -11 213 122 4 1711 240 342 0 24 chr4 147695932 147696055 -7934065 + CT-rich Low_complexity Low_complexity 3 122 0 4 1711 399 341 0 8 chr4 147696098 147696222 -7933898 - PB1 SINE Alu -4 123 1 4 1711 822 11 0 0 chr4 147697015 147697110 -7933010 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1711 438 36 0 0 chr4 147697952 147698008 -7932112 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1711 3570 15 3 0 chr4 147698008 147698397 -7931723 + MTA_Mm LTR MaLR 5 394 -2 4 1711 468 0 0 0 chr4 147698397 147698449 -7931671 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1711 276 30 0 0 chr4 147698449 147698481 -7931639 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1711 181 114 0 83 chr4 147699280 147699328 -7930792 + CT-rich Low_complexity Low_complexity 5 48 0 4 1711 205 146 42 0 chr4 147699351 147699399 -7930721 + CT-rich Low_complexity Low_complexity 1 50 0 4 1711 203 352 57 0 chr4 147700138 147700243 -7929877 + MIR SINE MIR 33 143 -119 4 1711 552 206 242 15 chr4 147700462 147700722 -7929398 + MTE2a LTR MaLR 60 379 0 4 1711 495 0 0 0 chr4 147701271 147701326 -7928794 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1711 188 347 61 0 chr4 147701953 147702051 -7928069 + MIRm SINE MIR 34 137 -139 4 1711 432 346 40 66 chr4 147702057 147702283 -7927837 + Charlie15a DNA MER1_type 5 224 0 4 1711 317 264 80 18 chr4 147702456 147702568 -7927552 - MER117 DNA MER1_type -5 192 74 4 1711 377 181 7 0 chr4 147702784 147702922 -7927198 + T-rich Low_complexity Low_complexity 2 140 0 4 1711 592 71 14 4 chr4 147703207 147703301 -7926819 + B1_Mus1 SINE Alu 21 113 -35 4 1711 375 23 0 0 chr4 147703537 147703581 -7926539 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 1711 414 0 0 0 chr4 147705452 147705498 -7924622 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 4 1711 296 145 0 183 chr4 147705522 147705691 -7924429 - RMER17C LTR ERVK -135 275 138 4 1711 426 309 85 24 chr4 147705692 147705904 -7924216 - L2a LINE L2 -10 3416 3192 4 1711 1176 262 16 88 chr4 147705906 147706282 -7923838 + MTE2a LTR MaLR 19 367 -12 4 1711 501 314 96 37 chr4 147706435 147706759 -7923361 + MLT1D LTR MaLR 1 343 -162 4 1711 756 284 45 9 chr4 147706782 147707006 -7923114 + B4A SINE B4 5 236 -56 4 1711 1299 41 0 0 chr4 147707034 147707204 -7922916 + (GA)n Simple_repeat Simple_repeat 1 170 0 4 1711 298 297 142 31 chr4 147707707 147707889 -7922231 - MIRb SINE MIR -50 218 18 4 1711 470 305 116 9 chr4 147710338 147710553 -7919567 + MIRb SINE MIR 5 242 -26 4 1711 241 332 40 130 chr4 147711238 147711491 -7918629 - LTR16A1 LTR ERVL -219 237 8 4 1711 532 252 82 0 chr4 147711755 147711902 -7918218 + MLT1D LTR MaLR 251 409 -96 4 1711 938 269 87 65 chr4 147711948 147712359 -7917761 + MTD LTR MaLR 1 405 -14 4 1711 242 307 86 17 chr4 147712540 147712656 -7917464 + MER3 DNA MER1_type 81 204 -5 4 1711 1031 128 14 14 chr4 147713077 147713424 -7916696 + (TATG)n Simple_repeat Simple_repeat 1 347 0 4 1711 1006 281 112 0 chr4 147713424 147713684 -7916436 - B4A SINE B4 0 292 4 4 1711 347 291 101 16 chr4 147713701 147713830 -7916290 - B1F SINE Alu -2 147 8 4 1711 295 323 133 8 chr4 147714025 147714153 -7915967 + RSINE1 SINE B4 22 165 0 4 1711 627 67 0 0 chr4 147714759 147714848 -7915272 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1711 240 286 116 0 chr4 147715974 147716120 -7914000 + MIRm SINE MIR 86 257 -11 4 1711 757 194 61 61 chr4 147716917 147717114 -7913006 - B3A SINE B2 0 198 2 4 1711 998 187 55 50 chr4 147717145 147717202 -7912918 + ID SINE ID 1 55 -169 4 1711 4336 148 122 56 chr4 147717202 147718048 -7912072 - RMER19B LTR ERVK 0 902 1 4 213 998 205 58 52 chr4 147718048 147718235 -7911885 + ID_B1 SINE B4 55 249 -43 4 1712 310 293 44 0 chr4 147718253 147718347 -7911773 + PB1D7 SINE Alu 2 96 -21 4 1712 607 253 18 47 chr4 147718490 147718660 -7911460 + RSINE1 SINE B4 1 165 0 4 1712 267 189 0 0 chr4 147718660 147718713 -7911407 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 1712 486 240 0 0 chr4 147718724 147718824 -7911296 + RSINE1 SINE B4 3 102 -63 4 1712 460 340 93 55 chr4 147719085 147719484 -7910636 + L1MEf LINE L1 1189 1602 -4598 4 1712 352 260 50 28 chr4 147719570 147719752 -7910368 + L1MEf LINE L1 1811 1996 -4128 4 1712 654 49 0 0 chr4 147719794 147719876 -7910244 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 4 1712 1454 215 122 8 chr4 147720064 147720425 -7909695 - MTD LTR MaLR 0 419 18 4 1712 381 264 0 11 chr4 147720462 147720554 -7909566 + B4A SINE B4 6 96 -196 4 1712 254 371 12 19 chr4 147720776 147720938 -7909182 - MIR SINE MIR -58 204 44 4 1712 1173 183 24 14 chr4 147721706 147721917 -7908203 - B3 SINE B2 0 216 4 4 1712 580 266 28 14 chr4 147721947 147722092 -7908028 - B4A SINE B4 -48 244 98 4 1712 898 227 0 32 chr4 147722157 147722344 -7907776 - B3A SINE B2 -16 182 2 4 1712 681 226 8 8 chr4 147722384 147722518 -7907602 - RSINE1 SINE B4 -30 135 2 4 1712 788 263 32 28 chr4 147722792 147723074 -7907046 + L1MC1 LINE L1 5549 5831 -502 4 1712 753 231 99 70 chr4 147723077 147723361 -7906759 + B4A SINE B4 1 292 0 4 1712 519 179 0 0 chr4 147723361 147723467 -7906653 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 1712 23 54 0 0 chr4 147723485 147723522 -7906598 + AT_rich Low_complexity Low_complexity 1 37 0 4 1712 306 125 0 0 chr4 147723540 147723588 -7906532 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1712 241 280 8 106 chr4 147723675 147723807 -7906313 + L1MC1 LINE L1 6204 6322 -11 4 1712 300 291 7 133 chr4 147724077 147724212 -7905908 + RSINE1 SINE B4 1 118 -47 4 1712 1116 133 0 0 chr4 147724221 147724401 -7905719 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1712 237 111 91 45 chr4 147725375 147725441 -7904679 + Lx4B LINE L1 6986 7054 -4 4 1712 256 250 0 30 chr4 147725465 147725531 -7904589 + ID4 SINE ID 18 81 -2 4 1712 271 227 15 29 chr4 147725475 147725543 -7904577 + ID_B1 SINE B4 29 95 -129 4 1712 243 333 28 28 chr4 147725562 147725741 -7904379 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 4 1712 422 36 0 18 chr4 147725909 147725966 -7904154 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1712 377 186 14 0 chr4 147726014 147726084 -7904036 + ID_B1 SINE B4 150 220 -4 4 1712 244 266 9 138 chr4 147726675 147726784 -7903336 - RSINE1 SINE B4 -69 96 2 5 1712 888 222 44 29 chr4 147726930 147727134 -7902986 - B3 SINE B2 -8 208 2 5 1712 196 30 61 0 chr4 147727136 147727169 -7902951 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1712 515 211 29 0 chr4 147727194 147727298 -7902822 - PB1D10 SINE Alu -7 110 4 5 1712 448 278 0 8 chr4 147727391 147727518 -7902602 + L1MB8 LINE L1 5876 6001 -177 5 1712 670 270 40 0 chr4 147728431 147728583 -7901537 + RSINE1 SINE B4 2 159 -6 5 1712 208 341 45 0 chr4 147729466 147729554 -7900566 + L2b LINE L2 3284 3375 0 5 1712 607 183 0 54 chr4 147729639 147729824 -7900296 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 5 1712 324 0 0 0 chr4 147731002 147731038 -7899082 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1712 619 290 75 25 chr4 147731358 147731736 -7898384 + L1MC4 LINE L1 7240 7656 -386 5 1712 517 125 93 10 chr4 147732708 147732805 -7897315 + B1_Mur4 SINE Alu 2 106 -44 5 1712 335 216 27 9 chr4 147732827 147732939 -7897181 + GA-rich Low_complexity Low_complexity 2 115 0 5 1712 639 218 263 6 chr4 147733324 147733495 -7896625 + B3 SINE B2 2 216 0 5 1712 181 323 79 20 chr4 147733586 147733687 -7896433 + MIRb SINE MIR 29 135 -133 5 1712 361 217 36 54 chr4 147733767 147733879 -7896241 - RSINE1 SINE B4 -45 120 11 5 1712 245 250 120 0 chr4 147733884 147733984 -7896136 + MTEb LTR MaLR 189 300 -79 5 1712 393 183 9 19 chr4 147733987 147734093 -7896027 + GA-rich Low_complexity Low_complexity 2 106 0 5 1712 434 291 0 9 chr4 147734325 147734436 -7895684 + PB1D10 SINE Alu 1 110 -7 5 1712 583 223 96 72 chr4 147734447 147734596 -7895524 + B3 SINE B2 4 166 -50 5 1712 393 22 0 0 chr4 147734596 147734642 -7895478 + (CATA)n Simple_repeat Simple_repeat 1 46 0 5 1712 583 223 96 72 chr4 147734642 147734700 -7895420 + B3 SINE B2 167 216 0 5 1712 252 0 0 0 chr4 147734700 147734728 -7895392 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 5 1712 342 311 65 43 chr4 147734766 147734951 -7895169 - ERVL-E-int LTR ERVL -675 4992 4804 5 1712 651 338 34 4 chr4 147735128 147735395 -7894725 - ERVL-E-int LTR ERVL -2428 3239 2965 5 1712 725 238 161 65 chr4 147735506 147735785 -7894335 + MTEa LTR MaLR 32 337 -42 5 1712 854 165 3 31 chr4 147735816 147736109 -7894011 + CT-rich Low_complexity Low_complexity 1 284 0 5 1712 235 188 22 59 chr4 147736095 147736231 -7893889 + C-rich Low_complexity Low_complexity 2 132 0 5 1712 256 143 107 0 chr4 147736238 147736294 -7893826 + MTEa LTR MaLR 314 375 -4 5 1712 414 53 0 0 chr4 147736712 147736769 -7893351 + (CCCCAA)n Simple_repeat Simple_repeat 3 59 0 5 1712 549 244 122 0 chr4 147736819 147736983 -7893137 - RMER15 LTR ERVL -50 525 342 5 1712 277 322 32 32 chr4 147737386 147737479 -7892641 - ERVL-E-int LTR ERVL -3760 1954 1862 5 1712 567 335 8 16 chr4 147737934 147738177 -7891943 - ERVL-E-int LTR ERVL -3872 1124 884 5 1712 586 319 36 14 chr4 147738203 147738422 -7891698 - RMER15 LTR ERVL 0 575 352 5 1712 3298 36 28 3 chr4 147738612 147739002 -7891118 + MTB LTR MaLR 1 400 0 5 1712 373 258 22 0 chr4 147739009 147739098 -7891022 - RSINE1 SINE B4 -72 93 3 5 1712 340 227 122 41 chr4 147739098 147739215 -7890905 + RMER5 LTR ERV1 126 254 -280 5 1712 180 0 0 0 chr4 147739320 147739340 -7890780 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 5 1712 968 173 10 51 chr4 147739345 147739540 -7890580 - B3 SINE B2 -28 188 2 5 1712 378 260 121 89 chr4 147739583 147739632 -7890488 + RMER5 LTR ERV1 331 384 -150 5 1712 1228 43 0 0 chr4 147739632 147739772 -7890348 + B1_Mm SINE Alu 2 141 -6 5 1712 378 260 121 89 chr4 147739772 147739912 -7890208 + RMER5 LTR ERV1 385 526 -8 5 1712 434 204 21 21 chr4 147740092 147740187 -7889933 - MLT1J2 LTR MaLR -302 146 52 5 1712 553 204 35 0 chr4 147740321 147740434 -7889686 - ID_B1 SINE B4 -28 196 80 5 1712 228 143 0 0 chr4 147740644 147740686 -7889434 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 5 1712 495 211 114 0 chr4 147740686 147740809 -7889311 - ID_B1 SINE B4 -5 219 83 5 1712 365 182 26 173 chr4 147741084 147741310 -7888810 + HAL1-2a_MD LINE L1 2327 2519 -505 5 1712 307 331 46 29 chr4 147741745 147741919 -7888201 + MIRb SINE MIR 58 234 -34 5 1712 243 108 0 0 chr4 147742396 147742433 -7887687 - B1_Mur4 SINE Alu -2 148 112 5 1712 249 269 12 60 chr4 147742451 147742534 -7887586 - MIR SINE MIR -61 147 69 5 1712 608 239 59 7 chr4 147742601 147742736 -7887384 + RSINE1 SINE B4 24 165 0 5 1712 324 219 16 8 chr4 147742757 147742881 -7887239 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 1712 1377 229 53 22 chr4 147743122 147743479 -7886641 - ORR1D2 LTR MaLR 0 370 3 5 1712 246 283 108 23 chr4 147743510 147743640 -7886480 + MIRc SINE MIR 39 179 -89 5 1712 837 194 91 0 chr4 147743935 147744100 -7886020 - B3A SINE B2 -16 182 3 5 1712 529 308 11 47 chr4 147744101 147744292 -7885828 - MLT1B LTR MaLR -60 330 147 5 1712 403 179 0 0 chr4 147744411 147744478 -7885642 + B3 SINE B2 52 118 -98 5 1712 609 310 26 73 chr4 147744548 147744851 -7885269 - ORR1D2 LTR MaLR 0 370 82 5 1712 306 0 0 0 chr4 147744889 147744923 -7885197 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1712 645 153 0 9 chr4 147744987 147745099 -7885021 - B1_Mur2 SINE Alu 0 149 39 5 1712 183 40 202 0 chr4 147745102 147745201 -7884919 + (CCTG)n Simple_repeat Simple_repeat 2 120 0 5 1712 254 0 0 159 chr4 147745205 147745331 -7884789 + (CTCTG)n Simple_repeat Simple_repeat 5 110 0 5 1712 260 140 120 0 chr4 147745333 147745383 -7884737 + MurSatRep1 Unknown Unknown 230 285 -1852 5 1712 376 250 10 30 chr4 147745383 147745482 -7884638 - ORR1D2 LTR MaLR -257 102 6 5 1712 325 319 34 34 chr4 147745731 147745848 -7884272 - MLT1B LTR MaLR -257 117 1 5 1712 246 200 0 0 chr4 147746225 147746275 -7883845 + L1MD3 LINE L1 7730 7779 -216 5 1712 945 249 19 14 chr4 147746280 147746494 -7883626 + B4A SINE B4 15 229 -63 5 1712 354 309 160 40 chr4 147746504 147746601 -7883519 + B4 SINE B4 97 214 -78 5 1712 546 29 0 0 chr4 147746601 147746669 -7883451 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 5 1712 579 222 8 17 chr4 147746669 147746680 -7883440 + PB1D9 SINE Alu 109 118 -2 5 1712 767 75 8 0 chr4 147746683 147746803 -7883317 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 5 1712 354 309 160 40 chr4 147746803 147746865 -7883255 + B4 SINE B4 227 292 0 5 1712 359 295 144 6 chr4 147746896 147747070 -7883050 + L1MD3 LINE L1 7776 7973 -22 5 1712 444 336 91 64 chr4 147747343 147747639 -7882481 + MER33 DNA MER1_type 21 324 0 5 1712 282 302 23 51 chr4 147748107 147748250 -7881870 + B1F2 SINE Alu 8 147 -2 5 1712 335 267 57 85 chr4 147748253 147748429 -7881691 + B4A SINE B4 2 172 -120 5 1712 342 0 0 0 chr4 147748531 147748569 -7881551 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1712 473 278 37 62 chr4 147748594 147748755 -7881365 + RSINE1 SINE B4 9 165 0 5 1712 278 265 0 121 chr4 147748850 147748966 -7881154 - MLT1K LTR MaLR -295 300 199 5 1712 1592 114 36 137 chr4 147748982 147749339 -7880781 + ORR1A4 LTR MaLR 1 321 -8 5 1712 288 77 0 0 chr4 147750312 147750351 -7879769 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1712 315 0 0 0 chr4 147751854 147751889 -7878231 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1712 856 170 0 0 chr4 147751889 147752024 -7878096 - B1_Mur4 SINE Alu -13 137 3 5 1712 348 262 54 54 chr4 147752084 147752233 -7877887 - RSINE1 SINE B4 -15 150 2 5 1712 234 115 49 0 chr4 147752534 147752595 -7877525 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1712 341 314 38 0 chr4 147753448 147753553 -7876567 + PB1D10 SINE Alu 1 109 -8 5 1712 636 281 120 13 chr4 147753543 147753777 -7876343 + B4A SINE B4 14 272 -20 5 1712 180 231 0 0 chr4 147753930 147753969 -7876151 + MIRc SINE MIR 113 151 -117 5 1712 454 377 42 18 chr4 147753969 147754230 -7875890 + B4A SINE B4 1 282 -10 5 1712 256 316 70 20 chr4 147754310 147754410 -7875710 - 5S rRNA rRNA -16 105 1 5 1712 3948 244 86 16 chr4 147754535 147754627 -7875493 + Lx8 LINE L1 6230 6338 -1135 5 1712 324 0 0 0 chr4 147754627 147754663 -7875457 + (CAA)n Simple_repeat Simple_repeat 3 38 0 5 1712 3948 244 86 16 chr4 147754663 147754769 -7875351 + Lx8 LINE L1 6339 6442 -1031 5 1712 612 186 124 75 chr4 147754769 147754955 -7875165 + B3A SINE B2 1 195 -3 5 1712 3948 244 86 16 chr4 147754955 147755773 -7874347 + Lx8 LINE L1 6443 7317 -156 5 1712 1110 159 16 11 chr4 147755775 147755966 -7874154 - B2_Mm2 SINE B2 -1 194 3 5 1712 315 146 36 0 chr4 147756133 147756188 -7873932 + Lx8 LINE L1 6583 6639 -834 5 1712 253 241 59 24 chr4 147756188 147756273 -7873847 - PB1D10 SINE Alu -21 96 9 5 1712 419 113 0 14 chr4 147756322 147756394 -7873726 + (CCCCCT)n Simple_repeat Simple_repeat 3 73 0 5 1712 980 197 55 20 chr4 147756857 147757059 -7873061 + B3 SINE B2 2 210 -6 5 1712 529 217 155 0 chr4 147757107 147757236 -7872884 - B1_Mur2 SINE Alu 0 149 1 5 1712 444 287 96 0 chr4 147757276 147757412 -7872708 + B1F SINE Alu 1 149 0 5 1712 1040 233 13 31 chr4 147757422 147757648 -7872472 + ID_B1 SINE B4 3 224 0 5 1712 252 143 0 0 chr4 147757788 147757830 -7872290 + (CGGG)n Simple_repeat Simple_repeat 2 43 0 5 1712 575 349 101 13 chr4 147759795 147760033 -7870087 - MLT1L LTR MaLR -10 600 342 5 1712 290 324 0 51 chr4 147760016 147760133 -7869987 + ID_B1 SINE B4 66 176 -48 5 1712 505 158 0 0 chr4 147760061 147760143 -7869977 + PB1D9 SINE Alu 27 108 -12 5 1712 1012 151 0 25 chr4 147761251 147761970 -7868150 + (CCCCAG)n Simple_repeat Simple_repeat 1 700 0 5 1712 234 222 37 0 chr4 147762910 147762964 -7867156 + GA-rich Low_complexity Low_complexity 5 60 0 5 1712 635 300 6 0 chr4 147763036 147763196 -7866924 + RSINE1 SINE B4 5 165 0 5 1712 1105 185 30 5 chr4 147763251 147763452 -7866668 + B3 SINE B2 1 206 -10 5 1712 941 198 76 5 chr4 147764472 147764670 -7865450 - B3 SINE B2 -4 212 1 5 1712 22 35 0 0 chr4 147764738 147764767 -7865353 + AT_rich Low_complexity Low_complexity 1 29 0 5 1712 198 91 0 0 chr4 147764946 147764979 -7865141 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1712 499 205 73 8 chr4 147765242 147765365 -7864755 + B1F SINE Alu 1 131 -18 6 1712 432 97 0 0 chr4 147765379 147765441 -7864679 + (TGAA)n Simple_repeat Simple_repeat 3 64 0 6 1712 182 132 0 50 chr4 147766779 147766819 -7863301 + C-rich Low_complexity Low_complexity 5 42 0 6 1712 382 327 32 6 chr4 147767073 147767230 -7862890 + MIR SINE MIR 64 224 -38 6 1712 244 337 164 51 chr4 147767300 147767575 -7862545 + MER46C DNA MER2_type 12 317 -21 6 1712 251 233 0 121 chr4 147767653 147767736 -7862384 + PB1D10 SINE Alu 34 106 -11 6 1712 752 262 88 10 chr4 147767746 147767939 -7862181 + ID_B1 SINE B4 1 208 -16 6 1712 357 148 0 36 chr4 147767948 147768032 -7862088 + GA-rich Low_complexity Low_complexity 1 81 0 6 1712 404 276 17 8 chr4 147769527 147769644 -7860476 + MER117 DNA MER1_type 80 197 0 6 1712 267 269 0 15 chr4 147769683 147769751 -7860369 - PB1D10 SINE Alu -5 112 46 6 1712 421 135 45 34 chr4 147769811 147769987 -7860133 + (TCTG)n Simple_repeat Simple_repeat 2 179 0 6 1712 266 203 31 0 chr4 147769988 147770052 -7860068 + (TCTCTG)n Simple_repeat Simple_repeat 3 68 0 6 1712 231 61 0 0 chr4 147770052 147770085 -7860035 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1712 327 323 59 5 chr4 147770553 147770755 -7859365 + L2a LINE L2 2924 3136 -290 6 1712 945 234 54 0 chr4 147770802 147771007 -7859113 + B3 SINE B2 1 216 0 6 1712 297 0 0 0 chr4 147771036 147771069 -7859051 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 6 1712 241 212 58 43 chr4 147771109 147771178 -7858942 - ID4 SINE ID -13 70 1 6 1712 252 354 33 33 chr4 147771237 147771357 -7858763 + L2a LINE L2 3305 3424 -2 6 1712 459 0 0 0 chr4 147771715 147771766 -7858354 + (TTTTA)n Simple_repeat Simple_repeat 5 55 0 6 1712 494 245 177 6 chr4 147771766 147771930 -7858190 - B3 SINE B2 -24 192 1 6 1712 311 229 13 25 chr4 147773063 147773301 -7856819 + (CAGA)n Simple_repeat Simple_repeat 1 235 0 6 1712 234 170 28 19 chr4 147773314 147773422 -7856698 + (CAGA)n Simple_repeat Simple_repeat 2 110 0 6 1712 526 207 18 9 chr4 147774558 147774670 -7855450 - B4A SINE B4 -9 283 171 6 1712 1433 236 26 48 chr4 147774670 147774955 -7855165 + ORR1D2 LTR MaLR 1 287 -83 6 1712 1007 144 152 10 chr4 147774955 147775152 -7854968 + URR1B DNA MER1_type 1 225 0 6 1712 1433 236 26 48 chr4 147775152 147775244 -7854876 + ORR1D2 LTR MaLR 288 370 0 6 1712 430 277 83 13 chr4 147775251 147775408 -7854712 - B4 SINE B4 -124 168 1 6 1712 230 253 145 0 chr4 147775566 147775670 -7854450 + MIR SINE MIR 2 119 -149 6 1712 726 196 13 4 chr4 147776417 147776655 -7853465 + CT-rich Low_complexity Low_complexity 1 240 0 6 1712 414 141 0 66 chr4 147776968 147777059 -7853061 + URR1B DNA MER1_type 58 142 -83 6 1712 1074 82 13 0 chr4 147777060 147777218 -7852902 + URR1B DNA MER1_type 66 225 0 6 1712 289 309 62 0 chr4 147778025 147778122 -7851998 - L2a LINE L2 -1 3425 3323 6 1712 232 83 0 40 chr4 147778658 147778708 -7851412 + (CCCCCA)n Simple_repeat Simple_repeat 4 51 0 6 1712 194 158 53 0 chr4 147780215 147780253 -7849867 - MIRb SINE MIR -195 73 34 6 1712 766 223 0 26 chr4 147780393 147780545 -7849575 - B1_Mur1 SINE Alu 0 149 2 6 1712 360 0 0 0 chr4 147780636 147780676 -7849444 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1712 549 0 0 0 chr4 147780769 147780830 -7849290 + (TTA)n Simple_repeat Simple_repeat 3 63 0 6 1712 471 244 40 8 chr4 147780836 147780960 -7849160 - B1F1 SINE Alu -17 132 5 6 1712 218 330 34 34 chr4 147783031 147783150 -7846970 + L2a LINE L2 3308 3426 0 6 1712 221 222 16 0 chr4 147783150 147783213 -7846907 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 6 1712 377 284 75 34 chr4 147783695 147783883 -7846237 + MIR SINE MIR 39 241 -27 6 1712 902 199 0 0 chr4 147783899 147784060 -7846060 + RSINE1 SINE B4 3 163 -2 6 1712 291 283 0 0 chr4 147784070 147784169 -7845951 + (TGGA)n Simple_repeat Simple_repeat 1 99 0 6 1712 892 152 6 11 chr4 147784180 147784360 -7845760 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 6 1712 221 222 0 0 chr4 147784360 147784405 -7845715 + (TGGG)n Simple_repeat Simple_repeat 3 47 0 6 1712 564 116 0 0 chr4 147784406 147784492 -7845628 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 6 1712 539 204 17 50 chr4 147784560 147784679 -7845441 - PB1D10 SINE Alu -2 115 1 6 1712 383 284 0 0 chr4 147785909 147785997 -7844123 + PB1D10 SINE Alu 15 102 -15 6 1712 264 245 0 0 chr4 147785997 147786046 -7844074 + ID4_ SINE ID 34 82 -1 6 1712 478 234 68 121 chr4 147786268 147786458 -7843662 + MTE2a LTR MaLR 1 180 -199 6 1712 456 19 0 0 chr4 147786492 147786545 -7843575 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 6 1712 7211 80 3 71 chr4 147786545 147787464 -7842656 - Lx LINE L1 -16 6638 5787 6 1712 1315 20 0 0 chr4 147787464 147787611 -7842509 - B1_Mm SINE Alu 0 147 1 6 1712 7211 95 2 92 chr4 147787611 147788042 -7842078 - Lx LINE L1 -97 5786 5365 6 1712 3791 133 6 3 chr4 147788039 147788686 -7841434 + L1_Mur2 LINE L1 3530 4178 -1699 6 1712 376 273 45 26 chr4 147788687 147788841 -7841279 + B2_Mm2 SINE B2 35 191 -4 6 1712 226 219 15 30 chr4 147788867 147788933 -7841187 + B3 SINE B2 150 214 -2 6 1712 472 300 110 50 chr4 147788938 147789138 -7840982 + MTE2a LTR MaLR 168 379 0 6 1712 244 189 19 34 chr4 147789191 147789258 -7840862 + MIR SINE MIR 106 179 -97 6 1712 318 276 52 0 chr4 147789984 147790100 -7840020 + L1MB3 LINE L1 6047 6168 -15 6 1712 267 221 29 0 chr4 147790300 147790368 -7839752 - B1_Mur1 SINE Alu -2 147 78 6 1712 366 329 96 0 chr4 147790674 147790841 -7839279 - MIR SINE MIR -6 256 74 6 1712 599 212 11 96 chr4 147790903 147791080 -7839040 + RSINE1 SINE B4 4 165 0 6 1712 193 354 20 10 chr4 147791818 147791918 -7838202 + MIRc SINE MIR 24 124 -144 6 1712 555 199 61 8 chr4 147792976 147793108 -7837012 + RSINE1 SINE B4 3 141 -24 6 1712 380 282 31 86 chr4 147793174 147793302 -7836818 + B3A SINE B2 76 196 -2 6 1712 696 281 0 30 chr4 147793340 147793542 -7836578 + B3A SINE B2 1 196 -2 6 1712 471 35 0 0 chr4 147794378 147794435 -7835685 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1712 555 202 8 42 chr4 147794595 147794714 -7835406 - PB1D9 SINE Alu -2 118 4 6 1712 839 77 45 0 chr4 147795371 147795526 -7834594 + (TG)n Simple_repeat Simple_repeat 1 162 0 6 1712 228 317 39 29 chr4 147795550 147795654 -7834466 - MLT1H LTR MaLR 0 489 385 6 1712 299 333 103 39 chr4 147795733 147795967 -7834153 - MLT1H LTR MaLR -221 328 80 6 1712 396 247 1 1 chr4 147795979 147796070 -7834050 + RSINE1 SINE B4 2 92 -200 6 1712 213 121 0 0 chr4 147796090 147796123 -7833997 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1712 1173 68 7 0 chr4 147796201 147796347 -7833773 - B1_Mm SINE Alu 0 147 1 6 1712 311 267 7 161 chr4 147796444 147796517 -7833603 + MT2B LTR ERVL 1 58 -475 6 1712 1284 89 0 0 chr4 147796517 147796697 -7833423 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1712 1128 108 0 0 chr4 147796698 147796846 -7833274 - B1_Mus1 SINE Alu 0 148 1 6 1712 311 267 7 161 chr4 147796846 147796913 -7833207 + MT2B LTR ERVL 59 121 -412 6 1712 2269 196 33 24 chr4 147796919 147797378 -7832742 - RMER1B Other Other -4 1062 600 6 1712 812 308 64 28 chr4 147797396 147797723 -7832397 + MT2B LTR ERVL 253 591 -10 6 1712 416 148 0 53 chr4 147797955 147798063 -7832057 + B1_Mur1 SINE Alu 33 126 -23 6 1712 1197 34 0 0 chr4 147798074 147798220 -7831900 + (TG)n Simple_repeat Simple_repeat 1 146 0 6 1712 254 275 72 0 chr4 147798572 147798641 -7831479 - L1ME3A LINE L1 -157 6016 5943 6 1712 420 237 0 0 chr4 147798821 147798897 -7831223 + ID4_ SINE ID 2 77 -6 6 1712 547 245 34 40 chr4 147799584 147799733 -7830387 + B1F1 SINE Alu 2 149 0 6 1712 1440 69 32 0 chr4 147800945 147801134 -7828986 + B2_Mm2 SINE B2 1 195 0 6 1712 266 258 26 163 chr4 147801572 147801725 -7828395 + MIRc SINE MIR 17 148 -120 6 1712 192 316 13 26 chr4 147803757 147803835 -7826285 + L2c LINE L2 3091 3167 -220 6 1712 308 286 96 36 chr4 147804750 147804917 -7825203 + MIR SINE MIR 82 258 -4 6 1712 193 338 25 12 chr4 147806225 147806306 -7823814 - L3 LINE CR1 -232 4257 4176 6 1712 197 283 0 0 chr4 147806370 147806416 -7823704 - L3 LINE CR1 -446 4043 3998 6 1712 336 388 75 0 chr4 147807717 147807864 -7822256 - L3 LINE CR1 -1049 3440 3283 6 1712 1456 186 149 35 chr4 147807955 147808323 -7821797 - MTC LTR MaLR -2 419 10 6 1712 452 225 35 18 chr4 147808419 147808532 -7821588 - PB1D9 SINE Alu -3 117 3 6 1712 190 229 14 28 chr4 147811358 147811430 -7818690 + L2 LINE L2 2664 2734 -685 6 1712 180 222 0 0 chr4 147812742 147812778 -7817342 + L2 LINE L2 2771 2806 -613 6 1712 296 272 30 80 chr4 147812778 147812810 -7817310 + B4 SINE B4 70 164 -128 6 1712 352 235 0 0 chr4 147812810 147812878 -7817242 + PB1D10 SINE Alu 9 76 -41 6 1712 844 301 93 3 chr4 147812906 147813262 -7816858 + L1ME2z LINE L1 5498 5885 -559 6 1712 458 248 55 92 chr4 147813267 147813292 -7816828 + B4 SINE B4 66 223 -69 6 1712 976 93 7 0 chr4 147813292 147813431 -7816689 + B1_Mus1 SINE Alu 9 148 0 6 1712 723 200 20 20 chr4 147813453 147813601 -7816519 + B1_Mur3 SINE Alu 1 148 -1 6 1712 441 0 0 0 chr4 147813791 147813840 -7816280 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1712 696 12 0 0 chr4 147814020 147814101 -7816019 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 1712 696 239 15 74 chr4 147814536 147814739 -7815381 - B3A SINE B2 -2 196 6 6 1712 36 0 0 0 chr4 147814762 147814798 -7815322 + AT_rich Low_complexity Low_complexity 1 36 0 6 1712 812 168 53 0 chr4 147814816 147814947 -7815173 - B1_Mur3 SINE Alu -9 140 3 6 1712 437 154 0 11 chr4 147814987 147815079 -7815041 + CT-rich Low_complexity Low_complexity 3 93 0 6 1712 974 73 0 22 chr4 147815079 147815218 -7814902 - B1_Mm SINE Alu 0 147 12 6 1712 592 209 15 8 chr4 147815529 147815545 -7814575 - B1_Mm SINE Alu -15 132 116 6 1712 364 307 17 26 chr4 147815545 147815595 -7814525 - PB1D7 SINE Alu 0 120 71 6 1712 453 36 0 0 chr4 147815595 147815650 -7814470 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1712 364 307 17 26 chr4 147815650 147815716 -7814404 - PB1D7 SINE Alu -50 70 5 6 1712 626 161 27 0 chr4 147815716 147815829 -7814291 - B1_Mur4 SINE Alu -34 116 2 6 1712 367 211 8 119 chr4 147815728 147815846 -7814274 - MT2B LTR ERVL -344 257 153 7 1712 1242 273 146 31 chr4 147815873 147816783 -7813337 + L2a LINE L2 2129 3149 -277 7 1712 188 35 35 0 chr4 147816957 147816986 -7813134 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1712 542 306 0 22 chr4 147816993 147817130 -7812990 - RSINE1 SINE B4 -29 136 3 7 1712 1279 41 0 0 chr4 147817163 147817310 -7812810 - B1_Mus1 SINE Alu -1 147 1 7 1712 604 259 34 0 chr4 147817314 147817461 -7812659 - B3A SINE B2 -9 189 38 7 1712 751 156 16 0 chr4 147817465 147817593 -7812527 - U1 snRNA snRNA -34 131 2 7 1712 1038 144 0 91 chr4 147817593 147817792 -7812328 - B2_Mm2 SINE B2 -13 182 2 7 1712 425 304 43 0 chr4 147819145 147819260 -7810860 + ID_B1 SINE B4 84 203 -21 7 1712 881 123 14 55 chr4 147819283 147819429 -7810691 - B1_Mus1 SINE Alu -7 141 2 7 1712 199 133 0 43 chr4 147819447 147819494 -7810626 + GA-rich Low_complexity Low_complexity 5 49 0 7 1712 976 188 13 74 chr4 147819661 147819891 -7810229 + B3 SINE B2 1 216 0 7 1712 826 203 85 40 chr4 147819893 147820093 -7810027 - ID_B1 SINE B4 -14 210 2 7 1712 674 164 51 108 chr4 147820283 147820440 -7809680 + B1_Mur2 SINE Alu 2 149 0 7 1712 323 286 0 32 chr4 147820992 147821086 -7809034 + B1F2 SINE Alu 59 149 0 7 1712 451 269 101 118 chr4 147821683 147821868 -7808252 - ID_B1 SINE B4 0 224 41 7 1712 1227 55 0 0 chr4 147821868 147822013 -7808107 - B1_Mus2 SINE Alu 0 147 3 7 1712 451 269 101 118 chr4 147822013 147822055 -7808065 - ID SINE ID -184 40 1 7 1712 22 0 0 0 chr4 147822071 147822093 -7808027 + AT_rich Low_complexity Low_complexity 1 22 0 7 1712 210 37 0 0 chr4 147822189 147822216 -7807904 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 7 1712 219 229 155 14 chr4 147823482 147823553 -7806567 - PB1D10 SINE Alu -31 86 6 7 1712 393 234 108 0 chr4 147823492 147823603 -7806517 - ID_B1 SINE B4 -66 158 36 7 1712 281 264 228 7 chr4 147823869 147824014 -7806106 - MER2 DNA MER2_type -27 318 142 7 1712 579 237 58 0 chr4 147824158 147824297 -7805823 - RSINE1 SINE B4 -16 149 3 7 1712 560 252 129 0 chr4 147824565 147824720 -7805400 + B3A SINE B2 2 176 -22 7 1712 183 42 0 0 chr4 147824733 147824757 -7805363 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 7 1712 217 260 76 26 chr4 147825176 147825269 -7804851 + B4A SINE B4 1 96 -128 7 1712 650 235 88 0 chr4 147825356 147825492 -7804628 + RSINE1 SINE B4 2 149 -16 7 1712 3677 133 11 105 chr4 147825554 147826337 -7803783 - RMER6A LTR ERVK 0 756 47 7 1712 198 304 38 12 chr4 147828390 147828470 -7801650 - L2a LINE L2 -5 3421 3340 7 1712 303 176 0 0 chr4 147829099 147829150 -7800970 + B1F1 SINE Alu 10 60 -89 7 1712 297 235 0 42 chr4 147829150 147829170 -7800950 + ID_B1 SINE B4 91 158 -66 7 1712 305 315 0 0 chr4 147829164 147829237 -7800883 - ID_B1 SINE B4 -68 156 84 7 1712 364 250 25 0 chr4 147829237 147829317 -7800803 - ID4_ SINE ID -1 82 1 7 1712 423 217 57 0 chr4 147829354 147829460 -7800660 + PB1D9 SINE Alu 9 120 0 7 1712 265 364 60 15 chr4 147829832 147829966 -7800154 + MIR SINE MIR 73 212 -50 7 1712 188 337 75 11 chr4 147830326 147830500 -7799620 - L2a LINE L2 -184 3242 3058 7 1712 484 315 101 9 chr4 147830846 147831064 -7799056 - LTR16B2 LTR ERVL -224 238 1 7 1712 586 266 121 0 chr4 147831231 147831404 -7798716 - B4A SINE B4 -84 208 15 7 1712 187 296 28 0 chr4 147831431 147831502 -7798618 - L2a LINE L2 -627 2792 2720 7 1712 202 303 220 62 chr4 147831711 147832130 -7797990 - L2a LINE L2 -812 2607 2123 7 1712 271 307 8 50 chr4 147833357 147833477 -7796643 + MT2B LTR ERVL 138 252 -349 7 1712 590 252 66 7 chr4 147833383 147833519 -7796601 + ID_B1 SINE B4 78 221 -3 7 1712 254 347 53 0 chr4 147833579 147833674 -7796446 + PB1D7 SINE Alu 2 101 -19 7 1712 779 179 39 26 chr4 147834049 147834204 -7795916 - RMER10B LTR ERVL -48 350 194 7 1712 252 0 0 0 chr4 147835730 147835758 -7794362 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1712 1107 50 35 0 chr4 147835758 147835890 -7794230 - B1_Mm SINE Alu -9 138 2 7 1712 909 220 13 0 chr4 147836001 147836160 -7793960 - B3 SINE B2 -7 209 49 7 1712 461 232 19 39 chr4 147836211 147836314 -7793806 - B1_Mur1 SINE Alu -18 131 31 7 1712 555 277 36 0 chr4 147836369 147836506 -7793614 + RSINE1 SINE B4 2 143 -22 7 1712 1067 115 0 20 chr4 147836646 147836797 -7793323 + B1_Mur3 SINE Alu 1 148 -1 7 1712 297 314 195 7 chr4 147837972 147838126 -7791994 + MIRb SINE MIR 68 250 -18 7 1712 1146 166 25 107 chr4 147839519 147839677 -7790443 + URR1B DNA MER1_type 1 155 -70 7 1712 1138 102 0 0 chr4 147839677 147839824 -7790296 + B1_Mus1 SINE Alu 2 148 0 7 1712 1146 166 25 107 chr4 147839824 147839908 -7790212 + URR1B DNA MER1_type 156 223 -2 7 1712 1238 34 7 0 chr4 147841222 147841368 -7788752 - B1_Mus2 SINE Alu 0 147 1 7 1712 228 318 31 16 chr4 147841403 147841467 -7788653 - ID4_ SINE ID -16 67 3 7 1712 413 259 0 33 chr4 147843292 147843412 -7786708 - PB1D7 SINE Alu 0 120 5 7 1712 300 338 21 35 chr4 147843977 147844118 -7786002 - B1F SINE Alu -7 142 4 7 1712 538 207 199 41 chr4 147846518 147846689 -7783431 - B3A SINE B2 0 198 1 7 1712 259 229 16 16 chr4 147846702 147846764 -7783356 - ID2 SINE ID -20 63 2 7 1712 248 312 0 127 chr4 147846764 147846874 -7783246 - PB1 SINE Alu -2 125 30 7 1712 207 0 0 0 chr4 147847445 147847468 -7782652 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1712 475 228 52 9 chr4 147847476 147847591 -7782529 - PB1 SINE Alu -7 120 1 7 1712 431 352 100 65 chr4 147847628 147848112 -7782008 - L1M5 LINE L1 -1853 4293 3785 7 1712 185 0 40 0 chr4 147848112 147848137 -7781983 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1712 1243 41 0 7 chr4 147848143 147848292 -7781828 - B1_Mus1 SINE Alu 0 148 1 7 1712 431 352 100 65 chr4 147848292 147848350 -7781770 - L1M5 LINE L1 -2367 3779 3725 7 1712 198 0 0 0 chr4 147848546 147848568 -7781552 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1712 498 285 19 38 chr4 147848688 147848845 -7781275 + RSINE1 SINE B4 12 165 0 7 1712 268 286 132 0 chr4 147848904 147848995 -7781125 + ID_B1 SINE B4 81 183 -41 7 1712 301 247 100 11 chr4 147848917 147849007 -7781113 + B1F1 SINE Alu 19 116 -33 7 1712 901 117 88 0 chr4 147849058 147849195 -7780925 - B1_Mur4 SINE Alu 0 150 2 7 1713 397 322 31 68 chr4 147849219 147849382 -7780738 - B3A SINE B2 -28 170 14 7 1713 448 269 106 85 chr4 147849507 147849706 -7780414 + B4A SINE B4 2 204 -88 7 1713 405 0 0 0 chr4 147849714 147849759 -7780361 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1713 811 297 60 29 chr4 147849782 147850063 -7780057 + B4A SINE B4 1 290 -2 7 1713 821 184 56 25 chr4 147850088 147850250 -7779870 - B3 SINE B2 -10 206 40 7 1713 243 354 22 54 chr4 147850326 147850511 -7779609 - L1MB7 LINE L1 -20 6164 5986 7 1713 335 270 36 0 chr4 147850563 147850674 -7779446 - PB1D10 SINE Alu -1 116 2 7 1713 619 230 43 18 chr4 147850674 147850752 -7779368 - ID SINE ID -141 83 2 7 1713 1217 61 7 0 chr4 147850913 147851060 -7779060 - B1_Mus1 SINE Alu 0 148 1 7 1713 242 317 28 7 chr4 147851311 147851454 -7778666 + (TG)n Simple_repeat Simple_repeat 1 146 0 7 1713 241 206 14 42 chr4 147851865 147851936 -7778184 - RMER15 LTR ERVL -162 413 345 7 1713 245 216 20 0 chr4 147852022 147852073 -7778047 - RMER15 LTR ERVL -514 61 10 7 1713 25 31 0 0 chr4 147852079 147852111 -7778009 + AT_rich Low_complexity Low_complexity 1 32 0 7 1713 832 100 76 8 chr4 147852201 147852332 -7777788 - B1_Mur4 SINE Alu 0 150 11 7 1713 425 239 60 74 chr4 147852332 147852350 -7777770 - ID_B1 SINE B4 0 224 78 7 1713 508 193 142 7 chr4 147852916 147853057 -7777063 + RLTR30 LTR ERV1 218 377 -2 7 1713 340 268 83 38 chr4 147853558 147853571 -7776549 - B4A SINE B4 -53 239 103 7 1713 468 203 119 0 chr4 147853571 147853689 -7776431 - B1F1 SINE Alu 0 149 18 7 1713 234 219 298 24 chr4 147853981 147854065 -7776055 + PB1D7 SINE Alu 2 108 -12 7 1713 305 346 66 22 chr4 147854122 147854258 -7775862 + ID_B1 SINE B4 80 221 -3 7 1713 738 185 29 15 chr4 147854331 147854468 -7775652 - B1_Mur1 SINE Alu -6 143 5 7 1713 726 182 35 7 chr4 147854540 147854684 -7775436 - B1_Mur2 SINE Alu -1 148 1 7 1713 204 40 0 0 chr4 147856297 147856322 -7773798 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 7 1713 319 117 17 2 chr4 147856330 147856389 -7773731 - B2_Mm2 SINE B2 -111 105 47 7 1713 1310 102 11 0 chr4 147856435 147856612 -7773508 - B2_Mm1t SINE B2 -13 180 2 7 1713 514 147 214 8 chr4 147858156 147858273 -7771847 + B1_Mur3 SINE Alu 1 141 -8 7 1713 552 246 213 17 chr4 147859108 147859282 -7770838 + ID_B1 SINE B4 4 211 -13 7 1713 182 163 186 0 chr4 147859430 147859473 -7770647 + L3b LINE CR1 254 304 -178 7 1713 261 307 18 51 chr4 147859682 147859780 -7770340 + MER5A DNA MER1_type 8 108 -81 7 1713 390 333 47 23 chr4 147859831 147860003 -7770117 - L2 LINE L2 -515 2904 2729 7 1713 567 306 65 16 chr4 147860431 147860617 -7769503 - MER58B DNA MER1_type -111 230 36 7 1713 479 234 26 51 chr4 147861227 147861344 -7768776 - B1F1 SINE Alu -3 146 33 7 1713 296 98 0 0 chr4 147861332 147861373 -7768747 - B3A SINE B2 -157 41 1 7 1713 1076 232 52 12 chr4 147861511 147861760 -7768360 - ORR1E LTR MaLR -2 357 99 7 1713 297 240 197 23 chr4 147861871 147862003 -7768117 - MER5A1 DNA MER1_type -5 161 7 8 1713 245 356 93 7 chr4 147862215 147862365 -7767755 - MIRm SINE MIR -109 167 5 8 1713 278 220 102 0 chr4 147862417 147862476 -7767644 - tRNA-Ala-GCA tRNA tRNA -7 68 4 8 1713 2194 140 119 50 chr4 147862612 147862726 -7767394 - RMER4A LTR ERVK 0 466 353 8 1713 225 0 0 0 chr4 147862726 147862751 -7767369 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 8 1713 2194 140 119 50 chr4 147862751 147863001 -7767119 - RMER4A LTR ERVK -114 352 69 8 1713 1271 45 68 0 chr4 147863001 147863177 -7766943 - L1Md_F3 LINE L1 0 6584 6397 8 1713 2194 140 119 50 chr4 147863177 147863247 -7766873 - RMER4A LTR ERVK -398 68 2 8 1713 1643 52 0 0 chr4 147864228 147864421 -7765699 - B2_Mm1a SINE B2 0 193 1 8 1713 359 263 20 2 chr4 147865107 147865219 -7764901 + PB1D9 SINE Alu 9 120 0 8 1713 220 266 215 0 chr4 147867323 147867402 -7762718 - PB1D10 SINE Alu -21 96 1 8 1713 315 250 0 0 chr4 147867756 147867816 -7762304 + PB1D7 SINE Alu 1 60 -60 8 1713 247 370 55 9 chr4 147867816 147867865 -7762255 + B4 SINE B4 86 199 -93 8 1713 360 0 0 0 chr4 147868076 147868116 -7762004 + (TGG)n Simple_repeat Simple_repeat 1 40 0 8 1713 453 248 48 0 chr4 147868116 147868221 -7761899 - PB1D9 SINE Alu -9 111 2 8 1713 210 333 0 0 chr4 147869081 147869147 -7760973 + C-rich Low_complexity Low_complexity 4 69 0 8 1713 985 150 0 26 chr4 147869710 147869861 -7760259 + B1_Mur2 SINE Alu 3 149 0 8 1713 1327 103 11 0 chr4 147872755 147872940 -7757180 + B2_Mm1t SINE B2 1 187 -6 8 1713 264 243 191 19 chr4 147876296 147876401 -7753719 + B1_Mur2 SINE Alu 2 124 -25 8 1713 754 218 103 0 chr4 147876415 147876589 -7753531 + B2_Mm2 SINE B2 2 193 -2 8 1713 1172 62 7 0 chr4 147876593 147876738 -7753382 + B1_Mm SINE Alu 2 147 0 8 1713 289 344 107 30 chr4 147876890 147877369 -7752751 + L1M5 LINE L1 5347 5876 -297 8 1713 887 209 110 0 chr4 147877404 147877595 -7752525 + B3 SINE B2 4 215 -1 8 1713 306 264 32 32 chr4 147879208 147879302 -7750818 + PB1D10 SINE Alu 24 117 0 8 1713 326 197 14 27 chr4 147879489 147879562 -7750558 + ID4 SINE ID 3 74 -9 8 1713 319 257 45 27 chr4 147879627 147879739 -7750381 + PB1D10 SINE Alu 2 115 -2 8 1713 1118 126 66 6 chr4 147879799 147879982 -7750138 - B2_Mm2 SINE B2 0 195 2 8 1713 237 327 18 0 chr4 147880252 147880307 -7749813 - AluF_3 SINE Alu -119 192 137 8 1713 742 228 58 29 chr4 147880410 147880618 -7749502 - B4A SINE B4 -50 242 29 8 1713 1116 36 43 21 chr4 147880631 147880642 -7749478 - B1_Mus1 SINE Alu 0 148 140 8 1713 353 20 41 0 chr4 147880642 147880691 -7749429 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 8 1713 1116 36 43 21 chr4 147880691 147880820 -7749300 - B1_Mus1 SINE Alu -9 139 5 8 1713 405 0 0 0 chr4 147880993 147881038 -7749082 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1713 573 15 0 0 chr4 147881038 147881103 -7749017 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1713 610 270 16 0 chr4 147881128 147881254 -7748866 - RSINE1 SINE B4 -30 135 8 8 1713 274 253 127 0 chr4 147881426 147881505 -7748615 + BC1_Mm scRNA scRNA 1 89 -63 8 1713 186 118 0 0 chr4 147881599 147881633 -7748487 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 8 1713 240 243 0 67 chr4 147882047 147882122 -7747998 + PB1D9 SINE Alu 51 120 0 8 1713 338 236 28 0 chr4 147883081 147883153 -7746967 - RSINE1 SINE B4 -45 120 47 8 1713 444 206 103 0 chr4 147884181 147884278 -7745842 - RSINE1 SINE B4 -56 109 3 8 1713 793 226 12 120 chr4 147885269 147885510 -7744610 - B3 SINE B2 -1 215 1 8 1713 248 236 0 68 chr4 147885533 147885592 -7744528 + ID4 SINE ID 3 57 -26 8 1713 1476 52 10 40 chr4 147885979 147886179 -7743941 - B2_Mm2 SINE B2 0 195 2 8 1713 320 376 22 22 chr4 147886378 147886560 -7743560 - MIRb SINE MIR -21 247 66 8 1713 537 239 54 0 chr4 147889260 147889390 -7740730 - B1F SINE Alu -1 148 12 8 1713 393 241 39 90 chr4 147889390 147889415 -7740705 - ID_B1 SINE B4 -2 222 76 8 1713 997 196 80 10 chr4 147889573 147889774 -7740346 + B3 SINE B2 1 215 -1 8 1713 446 124 37 38 chr4 147889810 147889901 -7740219 + B1_Mur1 SINE Alu 32 112 -37 8 1713 407 261 0 98 chr4 147890020 147890042 -7740078 + MT2B LTR ERVL 147 156 -445 8 1713 837 175 0 0 chr4 147890042 147890168 -7739952 + B1_Mus1 SINE Alu 3 128 -20 8 1713 339 315 75 20 chr4 147890050 147890196 -7739924 + B4A SINE B4 95 248 -44 8 1713 227 227 0 0 chr4 147890196 147890240 -7739880 + B4A SINE B4 1 44 -248 8 1713 227 227 0 0 chr4 147890279 147890323 -7739797 + B4A SINE B4 1 44 -248 8 1713 564 288 141 35 chr4 147890362 147890589 -7739531 + B4A SINE B4 1 251 -41 8 1713 291 309 128 37 chr4 147890573 147890761 -7739359 + B4A SINE B4 6 210 -82 8 1713 1198 153 53 0 chr4 147890773 147890962 -7739158 + B3 SINE B2 8 206 -10 8 1713 553 274 114 0 chr4 147891366 147891541 -7738579 - MER3 DNA MER1_type -14 195 1 8 1713 201 275 0 92 chr4 147891828 147891948 -7738172 + CT-rich Low_complexity Low_complexity 1 109 0 8 1713 361 237 128 56 chr4 147892931 147893156 -7736964 + B4A SINE B4 2 263 -29 8 1713 687 239 42 0 chr4 147893709 147893851 -7736269 + B1F SINE Alu 2 149 0 8 1713 679 230 113 83 chr4 147893911 147894115 -7736005 - B3 SINE B2 -5 211 2 8 1713 269 258 16 16 chr4 147894152 147894215 -7735905 + ID_B1 SINE B4 84 146 -78 8 1713 198 0 0 0 chr4 147894217 147894239 -7735881 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1713 1114 64 0 0 chr4 147894242 147894383 -7735737 - B1_Mus1 SINE Alu 0 148 8 8 1713 472 195 0 126 chr4 147894277 147894412 -7735708 - MT2B LTR ERVL -337 264 147 8 1713 442 235 0 0 chr4 147894391 147894472 -7735648 + ID_B1 SINE B4 137 217 -7 8 1713 312 255 72 9 chr4 147894524 147894635 -7735485 + B3A SINE B2 67 184 -14 8 1713 1209 61 0 13 chr4 147894668 147894806 -7735314 + B1_Mus2 SINE Alu 1 138 -9 8 1713 576 0 0 0 chr4 147894806 147894870 -7735250 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 8 1713 524 268 292 68 chr4 147895793 147896193 -7733927 - RMER15 LTR ERVL -85 490 1 8 1713 1673 26 5 0 chr4 147896225 147896416 -7733704 - B2_Mm1t SINE B2 -1 192 1 8 1713 295 309 49 0 chr4 147896425 147896506 -7733614 - MER21B LTR ERV1 -752 111 27 8 1713 276 30 0 0 chr4 147896666 147896699 -7733421 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 8 1713 1439 68 6 0 chr4 147896699 147896876 -7733244 - B2_Mm1a SINE B2 -15 178 1 8 1713 414 220 72 18 chr4 147897030 147897141 -7732979 - PB1D9 SINE Alu 0 120 4 8 1713 185 139 23 0 chr4 147897196 147897239 -7732881 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1713 1206 55 0 7 chr4 147897239 147897386 -7732734 - B1_Mm SINE Alu -1 146 1 8 1713 735 214 51 51 chr4 147897392 147897589 -7732531 - B3A SINE B2 -1 197 1 8 1713 915 88 0 0 chr4 147898734 147898882 -7731238 + (TG)n Simple_repeat Simple_repeat 2 149 0 8 1713 246 278 14 0 chr4 147900903 147900975 -7729145 + ID4 SINE ID 5 77 -6 8 1713 680 203 7 59 chr4 147902077 147902229 -7727891 + RSINE1 SINE B4 5 148 -17 8 1713 1621 42 0 0 chr4 147902280 147902472 -7727648 - B2_Mm1t SINE B2 0 193 2 8 1713 241 291 70 108 chr4 147902529 147902568 -7727552 + YREP_Mm Unknown Unknown 137 179 -1633 8 1713 1168 193 19 5 chr4 147902568 147902781 -7727339 - B3 SINE B2 0 216 1 8 1713 241 291 70 108 chr4 147902781 147902792 -7727328 + YREP_Mm Unknown Unknown 180 241 -1571 8 1713 722 169 105 0 chr4 147902792 147902916 -7727204 - B1F2 SINE Alu -7 142 6 8 1713 1675 26 5 0 chr4 147903044 147903235 -7726885 - B2_Mm1t SINE B2 -1 192 1 8 1713 32 0 0 0 chr4 147903326 147903358 -7726762 + AT_rich Low_complexity Low_complexity 1 32 0 8 1713 926 244 19 28 chr4 147903413 147903624 -7726496 + B3 SINE B2 3 211 -5 8 1713 709 231 13 39 chr4 147903643 147903796 -7726324 + B1_Mur2 SINE Alu 1 149 0 8 1713 443 304 144 42 chr4 147903837 147904101 -7726019 + B4 SINE B4 1 291 -1 8 1713 516 331 107 7 chr4 147904107 147904256 -7725864 + RSINE1 SINE B4 2 165 0 8 1713 212 317 57 46 chr4 147904117 147904292 -7725828 + B2_Mm2 SINE B2 11 187 -8 8 1713 256 319 174 0 chr4 147904316 147904454 -7725666 - MIRc SINE MIR -58 210 49 8 1713 310 231 30 127 chr4 147906291 147906425 -7723695 + MT2B LTR ERVL 144 264 -337 8 1713 762 158 82 15 chr4 147906325 147906460 -7723660 + B1_Mur4 SINE Alu 7 150 0 8 1713 290 333 42 0 chr4 147907216 147907288 -7722832 - B1F1 SINE Alu -67 82 8 8 1713 302 286 5 194 chr4 147907233 147907311 -7722809 + MT2B LTR ERVL 103 168 -433 8 1713 1288 113 27 0 chr4 147907311 147907497 -7722623 + B2_Mm1t SINE B2 2 192 -1 8 1713 302 286 5 194 chr4 147907497 147907609 -7722511 + MT2B LTR ERVL 169 257 -344 8 1713 796 203 35 0 chr4 147907507 147907650 -7722470 + B1_Mur3 SINE Alu 2 149 0 8 1713 1039 72 110 19 chr4 147907647 147907802 -7722318 - B2_Mm2 SINE B2 -14 181 13 8 1713 222 346 0 69 chr4 147907726 147907813 -7722307 - RSINE1 SINE B4 -79 86 6 8 1713 617 275 25 38 chr4 147908346 147908505 -7721615 - RSINE1 SINE B4 -4 161 5 8 1713 360 243 0 0 chr4 147909771 147909841 -7720279 + ID4_ SINE ID 3 72 -11 8 1713 633 276 0 8 chr4 147909950 147910078 -7720042 + B3 SINE B2 83 209 -7 8 1713 181 296 114 53 chr4 147911855 147911987 -7718133 + L4 LINE RTE 259 398 -1631 9 1713 261 250 159 0 chr4 147912225 147912313 -7717807 + PB1D10 SINE Alu 15 116 -1 9 1713 566 183 29 0 chr4 147913235 147913339 -7716781 + U6 snRNA snRNA 1 107 0 9 1713 1442 60 16 16 chr4 147913368 147913554 -7716566 - B2_Mm2 SINE B2 -9 186 1 9 1713 692 198 38 65 chr4 147913595 147913779 -7716341 - B2_Mm2 SINE B2 -14 181 3 9 1713 235 196 0 89 chr4 147913806 147913862 -7716258 - ID4_ SINE ID -11 72 22 9 1713 446 311 69 77 chr4 147914806 147915053 -7715067 - B4A SINE B4 -18 274 30 9 1713 814 223 112 21 chr4 147915061 147915249 -7714871 - B3 SINE B2 -11 205 1 9 1713 300 106 0 0 chr4 147915281 147915310 -7714810 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1713 1242 54 0 0 chr4 147915310 147915457 -7714663 - B1_Mus2 SINE Alu 0 147 1 9 1713 300 106 0 0 chr4 147915457 147915474 -7714646 + (T)n Simple_repeat Simple_repeat 1 17 0 9 1713 1129 88 0 26 chr4 147915500 147915652 -7714468 - B1_Mus1 SINE Alu 0 148 1 9 1713 1162 79 67 0 chr4 147915652 147915816 -7714304 - B2_Mm1t SINE B2 -16 177 3 9 1713 265 333 128 37 chr4 147915848 147915957 -7714163 - 7SK RNA RNA -166 165 47 9 1713 1628 52 0 0 chr4 147916051 147916244 -7713876 - B2_Mm1t SINE B2 0 193 1 9 1713 1063 119 0 0 chr4 147916252 147916395 -7713725 - B1_Mur4 SINE Alu -7 143 1 9 1713 567 225 126 58 chr4 147916424 147916595 -7713525 + B3A SINE B2 3 185 -10 9 1713 685 244 153 15 chr4 147916678 147916874 -7713246 + ID_B1 SINE B4 1 223 -1 9 1713 678 223 22 0 chr4 147916892 147917031 -7713089 + B1_Mur4 SINE Alu 1 142 -8 9 1713 213 121 0 0 chr4 147917031 147917064 -7713056 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1713 696 202 10 86 chr4 147917145 147917315 -7712805 + ID_B1 SINE B4 84 246 -46 9 1713 275 261 172 54 chr4 147917327 147917487 -7712633 - L2a LINE L2 -257 3169 2981 9 1713 264 111 0 0 chr4 147917487 147917532 -7712588 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1713 275 261 172 54 chr4 147917532 147917557 -7712563 - L2a LINE L2 -446 2980 2962 9 1713 1183 101 84 0 chr4 147917850 147918028 -7712092 - B2_Mm2 SINE B2 -2 193 1 9 1713 235 295 16 132 chr4 147918765 147918886 -7711234 + MT2B LTR ERVL 156 262 -339 9 1713 659 268 7 21 chr4 147918780 147918925 -7711195 + ID_B1 SINE B4 82 224 0 9 1713 284 245 0 0 chr4 147918930 147918979 -7711141 + B1F2 SINE Alu 7 55 -94 9 1713 1142 95 0 0 chr4 147918981 147919129 -7710991 + B1_Mur3 SINE Alu 1 148 -1 9 1713 684 93 0 0 chr4 147919156 147919253 -7710867 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 9 1713 468 219 142 9 chr4 147919919 147920025 -7710095 + RSINE1 SINE B4 3 122 -43 9 1713 310 220 28 7 chr4 147920052 147920194 -7709926 + (TA)n Simple_repeat Simple_repeat 2 146 0 9 1713 916 160 21 7 chr4 147920205 147920350 -7709770 + B1_Mur2 SINE Alu 2 148 -1 9 1713 285 191 40 160 chr4 147920707 147920734 -7709386 + MT2B2 LTR ERVL 151 165 -419 9 1713 476 262 108 23 chr4 147920734 147920863 -7709257 + B1F SINE Alu 1 140 -9 9 1713 520 216 34 25 chr4 147920851 147920970 -7709150 + B3 SINE B2 97 216 0 9 1713 636 283 0 0 chr4 147920973 147921132 -7708988 + RSINE1 SINE B4 3 161 -4 9 1713 259 226 19 131 chr4 147922105 147922212 -7707908 + ID2 SINE ID 16 110 -42 9 1713 262 329 39 97 chr4 147922338 147922493 -7707627 + B1F2 SINE Alu 1 146 -3 9 1713 503 207 17 51 chr4 147922497 147922614 -7707506 + PB1D9 SINE Alu 2 114 -6 9 1713 1533 58 16 0 chr4 147922624 147922814 -7707306 + B2_Mm1a SINE B2 1 193 0 9 1713 614 221 43 58 chr4 147922822 147922961 -7707159 + RSINE1 SINE B4 5 141 -24 9 1713 444 104 0 0 chr4 147922964 147923031 -7707089 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1713 318 185 19 0 chr4 147923226 147923280 -7706840 - MER58B DNA MER1_type -25 316 262 9 1713 573 55 0 0 chr4 147924397 147924470 -7705650 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1713 773 142 62 28 chr4 147924824 147924969 -7705151 + B1_Mur4 SINE Alu 1 150 0 9 1713 304 268 45 23 chr4 147925169 147925185 -7704935 + B1F SINE Alu 60 149 0 9 1713 388 208 14 0 chr4 147925185 147925257 -7704863 + ID_B1 SINE B4 152 224 0 9 1713 226 236 287 11 chr4 147925273 147925367 -7704753 + RSINE1 SINE B4 29 148 -17 9 1713 848 226 49 29 chr4 147925457 147925662 -7704458 - B3 SINE B2 -4 212 4 9 1713 210 226 81 0 chr4 147925689 147925751 -7704369 + ID4_ SINE ID 4 70 -13 9 1713 449 175 123 28 chr4 147925755 147925861 -7704259 + RSINE1 SINE B4 17 132 -33 9 1713 267 122 0 0 chr4 147925926 147925975 -7704145 + (T)n Simple_repeat Simple_repeat 1 49 0 9 1713 1039 32 0 0 chr4 147925975 147926099 -7704021 - B1_Mus1 SINE Alu 0 148 25 9 1713 1197 91 85 0 chr4 147926131 147926307 -7703813 + B2_Mm2 SINE B2 1 191 -4 9 1713 448 187 0 26 chr4 147926316 147926367 -7703753 + B1_Mur4 SINE Alu 1 75 -75 9 1713 254 315 54 33 chr4 147926367 147926393 -7703727 + B4 SINE B4 41 64 -228 9 1713 735 214 109 45 chr4 147926393 147926594 -7703526 + B3 SINE B2 2 215 -1 9 1713 526 264 60 4 chr4 147926594 147926743 -7703377 + ID_B1 SINE B4 65 221 -3 9 1713 1791 198 54 3 chr4 147927962 147928312 -7701808 - ORR1D1 LTR MaLR -6 368 1 9 1713 285 208 49 49 chr4 147928617 147928698 -7701422 + ID4_ SINE ID 2 82 -1 9 1713 227 198 216 113 chr4 147928991 147929088 -7701032 + PB1D9 SINE Alu 5 111 -9 9 1713 292 198 218 11 chr4 147929371 147929458 -7700662 + B1F SINE Alu 1 105 -44 9 1713 698 233 103 10 chr4 147929584 147929779 -7700341 + B3 SINE B2 1 213 -3 9 1713 567 131 0 0 chr4 147929801 147929885 -7700235 + U6 snRNA snRNA 1 84 -23 9 1713 29 0 0 0 chr4 147929904 147929933 -7700187 + AT_rich Low_complexity Low_complexity 1 29 0 9 1713 494 191 27 18 chr4 147930509 147930621 -7699499 + PB1D9 SINE Alu 1 113 -7 9 1713 216 281 155 10 chr4 147931880 147931977 -7698143 + PB1D9 SINE Alu 4 114 -6 9 1713 468 51 0 0 chr4 147931982 147932041 -7698079 + (CATA)n Simple_repeat Simple_repeat 2 60 0 9 1713 452 325 93 25 chr4 147932047 147932208 -7697912 - B3A SINE B2 -7 191 20 9 1713 257 246 0 71 chr4 147932254 147932265 -7697855 + B4A SINE B4 82 87 -205 9 1713 339 221 13 13 chr4 147932265 147932343 -7697777 + PB1D10 SINE Alu 3 80 -37 9 1713 25 0 0 0 chr4 147933056 147933081 -7697039 + AT_rich Low_complexity Low_complexity 1 25 0 9 1713 374 119 0 0 chr4 147933248 147933307 -7696813 - URR1B DNA MER1_type -75 150 92 9 1713 525 200 0 0 chr4 147933429 147933519 -7696601 + B1_Mur4 SINE Alu 1 90 -60 9 1713 221 140 97 81 chr4 147933510 147933572 -7696548 - B3A SINE B2 -134 64 2 9 1713 1366 68 17 22 chr4 147933823 147934004 -7696116 + B2_Mm2 SINE B2 1 180 -15 9 1713 1052 119 6 0 chr4 147934004 147934172 -7695948 + (GA)n Simple_repeat Simple_repeat 2 170 0 9 1713 615 243 36 7 chr4 147934338 147934475 -7695645 - B1_Mur1 SINE Alu -7 142 2 9 1713 554 310 25 6 chr4 147934503 147934662 -7695458 + RSINE1 SINE B4 2 163 -2 9 1713 661 170 36 0 chr4 147934688 147934800 -7695320 + B1_Mus2 SINE Alu 2 117 -30 9 1713 295 243 97 61 chr4 147934845 147934959 -7695161 - PB1D7 SINE Alu -2 118 1 9 1713 427 234 21 0 chr4 147935342 147935436 -7694684 + B1_Mm SINE Alu 1 96 -51 9 1713 210 143 0 0 chr4 147935454 147935489 -7694631 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 9 1713 469 274 198 0 chr4 147935493 147935650 -7694470 - B3A SINE B2 -10 188 1 9 1713 1174 41 7 40 chr4 147935703 147935855 -7694265 + B1_Mus2 SINE Alu 1 147 0 9 1713 547 207 65 6 chr4 147935869 147936028 -7694092 + B3 SINE B2 8 186 -7 9 1713 34 65 0 0 chr4 147936068 147936130 -7693990 + AT_rich Low_complexity Low_complexity 1 62 0 9 1713 312 27 0 0 chr4 147936148 147936185 -7693935 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1713 736 131 8 34 chr4 147936185 147936304 -7693816 - B3 SINE B2 -99 117 2 9 1713 283 315 34 0 chr4 147937372 147937461 -7692659 - B3A SINE B2 -97 101 10 9 1713 291 300 73 51 chr4 147937643 147937780 -7692340 + YREP_Mm Unknown Unknown 155 294 -1518 9 1713 685 276 8 36 chr4 147937670 147937858 -7692262 - ID_B1 SINE B4 -76 216 32 9 1713 389 284 11 0 chr4 147938442 147938537 -7691583 - B1F SINE Alu -11 138 43 9 1713 245 304 38 0 chr4 147939183 147939262 -7690858 + ID4_ SINE ID 2 83 0 9 1713 986 121 0 20 chr4 147939623 147939775 -7690345 - B1_Mur4 SINE Alu 0 150 2 9 1713 1235 54 7 0 chr4 147939807 147939954 -7690166 + B1_Mus1 SINE Alu 1 148 0 9 1713 661 177 270 31 chr4 147940637 147940800 -7689320 + B3 SINE B2 1 202 -14 9 1713 1164 42 28 7 chr4 147940815 147940959 -7689161 + B1_Mus2 SINE Alu 1 147 0 9 1713 561 143 162 0 chr4 147940969 147941074 -7689046 + B1_Mur3 SINE Alu 27 148 -1 9 1713 623 119 223 25 chr4 147941077 147941198 -7688922 + B1_Mus2 SINE Alu 2 146 -1 9 1713 1443 43 43 0 chr4 147941285 147941469 -7688651 - B2_Mm2 SINE B2 -2 193 2 9 1713 795 194 42 0 chr4 147941541 147941685 -7688435 + B1_Mur4 SINE Alu 1 150 0 1 1713 284 208 65 0 chr4 147941722 147941799 -7688321 - L1M LINE L1 -761 5428 5347 1 1713 253 325 12 0 chr4 147941943 147942023 -7688097 - ID2 SINE ID 0 83 3 1 1713 180 0 0 0 chr4 147942035 147942055 -7688065 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 1 1713 485 198 189 0 chr4 147942058 147942164 -7687956 - B1_Mur4 SINE Alu -2 148 23 1 1713 269 299 26 0 chr4 147942365 147942442 -7687678 - ID4_ SINE ID -1 82 4 1 1713 192 40 0 0 chr4 147943101 147943126 -7686994 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1713 336 243 165 0 chr4 147944247 147944350 -7685770 - B1F SINE Alu -23 126 7 1 1713 513 241 165 12 chr4 147944258 147944422 -7685698 - ID_B1 SINE B4 -32 192 4 1 1713 240 325 12 0 chr4 147944813 147944893 -7685227 - ID4 SINE ID 0 83 3 1 1713 272 310 79 22 chr4 147944921 147945010 -7685110 - RSINE1 SINE B4 -3 162 69 1 1713 503 256 33 0 chr4 147945510 147945631 -7684489 + ID_B1 SINE B4 81 205 -19 1 1713 256 238 31 31 chr4 147945636 147945701 -7684419 + RSINE1 SINE B4 32 96 -69 1 1713 1223 59 154 0 chr4 147945873 147946042 -7684078 - B2_Mm2 SINE B2 0 195 1 1 1713 379 243 0 195 chr4 147946062 147946236 -7683884 - B1F SINE Alu -5 144 5 1 1713 180 0 0 0 chr4 147946277 147946297 -7683823 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1713 338 270 11 22 chr4 147946832 147946923 -7683197 - B1_Mm SINE Alu -56 91 2 1 1713 521 283 6 25 chr4 147946923 147947007 -7683113 - ID SINE ID -142 82 2 1 1713 580 268 38 0 chr4 147947683 147947858 -7682262 + B3 SINE B2 2 194 -1 1 1713 980 114 0 0 chr4 147947858 147947990 -7682130 + B1_Mus1 SINE Alu 1 132 -16 1 1713 473 300 86 29 chr4 147948427 147948602 -7681518 + B4A SINE B4 2 186 -106 1 1713 484 225 110 52 chr4 147948681 147948817 -7681303 + B1_Mur3 SINE Alu 1 144 -5 1 1713 654 243 38 65 chr4 147948973 147949158 -7680962 + B3 SINE B2 37 216 0 1 1713 916 134 0 27 chr4 147949161 147949307 -7680813 + B1_Mus1 SINE Alu 7 148 0 1 1713 271 242 187 32 chr4 147949714 147949800 -7680320 + B1_Mus2 SINE Alu 2 96 -21 1 1713 912 250 18 9 chr4 147950500 147950722 -7679398 + ID_B1 SINE B4 1 224 0 1 1713 674 267 25 0 chr4 147951141 147951302 -7678818 + RSINE1 SINE B4 1 165 0 1 1713 1205 55 0 0 chr4 147951393 147951539 -7678581 - B1_Mm SINE Alu 0 147 2 1 1713 462 212 186 0 chr4 147951539 147951652 -7678468 + B1_Mur2 SINE Alu 14 147 -2 1 1713 340 321 21 134 chr4 147951696 147951780 -7678340 + ID SINE ID 1 83 -141 1 1713 466 216 126 16 chr4 147951780 147951907 -7678213 + B1F2 SINE Alu 1 141 -8 1 1713 340 321 21 134 chr4 147951907 147952016 -7678104 + ID_B1 SINE B4 84 172 -52 1 1713 229 337 109 0 chr4 147951940 147952032 -7678088 + PB1D10 SINE Alu 13 114 -3 1 1713 184 225 0 0 chr4 147952414 147952454 -7677666 - L3 LINE CR1 -125 4364 4325 1 1713 805 174 21 0 chr4 147953859 147954003 -7676117 - B1_Mus1 SINE Alu 0 148 2 1 1713 371 289 24 0 chr4 147955566 147955649 -7674471 - PB1D10 SINE Alu -31 86 2 1 1713 450 0 0 0 chr4 147956518 147956568 -7673552 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1713 293 323 28 84 chr4 147956810 147956874 -7673246 - ID_B1 SINE B4 -89 135 75 1 1713 339 282 27 9 chr4 147956874 147956985 -7673135 - PB1D7 SINE Alu -5 115 3 1 1713 293 323 28 84 chr4 147956985 147957062 -7673058 - ID SINE ID -150 74 2 1 1713 375 248 267 0 chr4 147957130 147957231 -7672889 - RSINE1 SINE B4 -35 130 3 1 1713 499 266 28 0 chr4 147957231 147957340 -7672780 - ID_B1 SINE B4 -14 210 99 1 1713 524 248 117 0 chr4 147957407 147957552 -7672568 - RSINE1 SINE B4 -2 163 2 1 1713 424 182 0 182 chr4 147957552 147957673 -7672447 + MTC LTR MaLR 313 411 -10 1 1713 261 236 156 11 chr4 147957720 147957810 -7672310 + PB1D9 SINE Alu 2 104 -16 1 1713 2658 137 191 24 chr4 147957922 147958842 -7671278 - RMER16-int LTR ERVK -4 5402 4328 1 1713 2173 121 36 26 chr4 147959011 147959401 -7670719 - RMER16-int LTR ERVK -1433 3973 3580 1 1713 2611 127 216 18 chr4 147959412 147959683 -7670437 - RLTR19-int LTR ERVK -4860 1277 961 1 1713 180 0 0 0 chr4 147959683 147959703 -7670417 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1713 2611 127 216 18 chr4 147959703 147960039 -7670081 - RLTR19-int LTR ERVK -5177 960 552 1 1713 959 206 131 51 chr4 147960042 147960577 -7669543 - RLTR19-int LTR ERVK -4833 573 19 1 1713 888 179 93 158 chr4 147960598 147960981 -7669139 - RMER16 LTR ERVK -1 532 5 1 1713 1150 81 0 0 chr4 147961007 147961155 -7668965 + B1_Mus1 SINE Alu 1 148 0 1 1713 372 178 0 0 chr4 147961182 147961255 -7668865 + GA-rich Low_complexity Low_complexity 2 74 0 1 1713 673 168 98 8 chr4 147961255 147961387 -7668733 + B1_Mur4 SINE Alu 6 149 -1 1 1713 386 218 0 13 chr4 147961535 147961614 -7668506 + PB1D10 SINE Alu 24 101 -16 1 1713 1205 204 213 30 chr4 147961708 147962046 -7668074 - MTD LTR MaLR -14 405 6 1 1713 1589 43 21 0 chr4 147962359 147962547 -7667573 + B2_Mm1a SINE B2 2 193 0 1 1713 289 207 0 79 chr4 147962602 147962665 -7667455 + B1_Mus1 SINE Alu 14 71 -77 1 1713 1122 95 0 7 chr4 147962681 147962829 -7667291 - B1_Mus1 SINE Alu -1 147 1 1 1713 747 195 0 8 chr4 147962854 147962983 -7667137 + B3 SINE B2 3 130 -86 1 1713 251 326 38 83 chr4 147962983 147963011 -7667109 + RSINE1 SINE B4 4 153 -12 1 1713 693 187 70 21 chr4 147963467 147963609 -7666511 - B1_Mur2 SINE Alu 0 149 1 1 1713 1536 150 76 76 chr4 147963914 147964311 -7665809 + RMER17C LTR ERVK 1 397 -13 1 1713 183 74 0 0 chr4 147964311 147964330 -7665790 + (T)n Simple_repeat Simple_repeat 1 19 0 1 1713 1269 27 0 0 chr4 147964330 147964477 -7665643 - B1_Mus2 SINE Alu 0 147 1 1 1713 183 74 0 0 chr4 147964477 147964484 -7665636 + (T)n Simple_repeat Simple_repeat 1 7 0 1 1713 1451 54 32 0 chr4 147964496 147964681 -7665439 - B2_Mm2 SINE B2 -4 191 1 1 1713 22 0 0 0 chr4 147965390 147965412 -7664708 + GC_rich Low_complexity Low_complexity 1 22 0 1 1713 22 56 0 0 chr4 147965737 147965773 -7664347 + GC_rich Low_complexity Low_complexity 1 36 0 1 1713 206 275 61 115 chr4 147966659 147966807 -7663313 + MIRc SINE MIR 13 152 -116 1 1713 243 316 188 22 chr4 147966941 147967122 -7662998 - L2a LINE L2 -20 3406 3196 1 1713 376 271 62 0 chr4 147967130 147967226 -7662894 + PB1D10 SINE Alu 16 117 0 1 1713 237 33 0 0 chr4 147968559 147968589 -7661531 + (GCCTG)n Simple_repeat Simple_repeat 1 30 0 1 1713 309 132 254 42 chr4 147969685 147969756 -7660364 - B1_Mus2 SINE Alu -1 146 61 1 1713 1007 101 65 0 chr4 147969830 147969968 -7660152 - B1_Mm SINE Alu 0 147 1 1 1713 289 279 13 0 chr4 147970650 147970729 -7659391 + ID4 SINE ID 2 81 -2 1 1713 930 131 28 0 chr4 147970793 147970938 -7659182 - B1_Mur4 SINE Alu 0 150 2 1 1713 518 217 50 138 chr4 147970798 147970958 -7659162 - B4 SINE B4 -71 221 76 1 1713 334 307 0 0 chr4 147970995 147971083 -7659037 - B3 SINE B2 -128 88 1 1 1713 2178 156 128 42 chr4 147971128 147971268 -7658852 - RMER15 LTR ERVL -59 516 340 1 1713 1642 27 11 0 chr4 147971268 147971456 -7658664 + B2_Mm1a SINE B2 1 190 -3 1 1713 2178 156 128 42 chr4 147971456 147971790 -7658330 - RMER15 LTR ERVL -236 339 1 1 1713 418 205 55 75 chr4 147971838 147971931 -7658189 + PB1D10 SINE Alu 11 98 -19 1 1713 1022 213 5 11 chr4 147971940 147972130 -7657990 + B3 SINE B2 5 193 -23 1 1713 615 285 49 0 chr4 147972149 147972293 -7657827 + RSINE1 SINE B4 3 153 -12 1 1713 536 158 193 0 chr4 147972333 147972447 -7657673 + B1_Mur4 SINE Alu 1 136 -14 1 1713 264 356 11 0 chr4 147972450 147972537 -7657583 + G-rich Low_complexity Low_complexity 2 89 0 1 1713 1265 94 77 0 chr4 147972733 147972914 -7657206 - B2_Mm2 SINE B2 0 195 1 1 1713 837 158 7 13 chr4 147972923 147973066 -7657054 + RLTR17 LTR ERVK 98 239 -453 1 1713 2178 148 15 82 chr4 147973066 147973471 -7656649 - RLTR1B LTR ERV1 0 512 135 1 1713 1691 134 17 42 chr4 147973558 147973846 -7656274 + RLTR17 LTR ERVK 235 515 -177 1 1713 384 133 88 11 chr4 147973873 147973964 -7656156 + B2_Mm2 SINE B2 98 195 0 1 1713 210 71 0 0 chr4 147973990 147974018 -7656102 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1713 361 190 90 139 chr4 147974019 147974141 -7655979 + RLTR17 LTR ERVK 577 692 0 1 1713 541 189 54 0 chr4 147974159 147974270 -7655850 - B3 SINE B2 -81 135 19 1 1713 258 299 119 42 chr4 147974693 147974836 -7655284 + RMER15 LTR ERVL 346 499 -76 1 1713 869 114 29 29 chr4 147975635 147975771 -7654349 - B1_Mus1 SINE Alu -1 147 12 1 1713 455 286 44 72 chr4 147975771 147975815 -7654305 - B4 SINE B4 -62 229 55 1 1713 542 322 68 0 chr4 147975799 147975945 -7654175 + B3 SINE B2 6 161 -55 1 1713 198 0 0 0 chr4 147975955 147975977 -7654143 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 1 1713 398 259 45 27 chr4 147976084 147976195 -7653925 + B1F2 SINE Alu 29 141 -8 1 1713 235 125 75 0 chr4 147977538 147977578 -7652542 + MIR SINE MIR 81 123 -139 1 1713 1275 41 0 0 chr4 147979517 147979663 -7650457 - B1_Mus2 SINE Alu 0 147 2 1 1714 224 254 13 78 chr4 147980525 147980602 -7649518 - PB1D10 SINE Alu -1 116 45 1 1714 277 280 13 13 chr4 147980705 147980781 -7649339 + ID4_ SINE ID 8 83 0 1 1714 666 153 174 25 chr4 147980921 147981042 -7649078 - B1_Mm SINE Alu -8 139 1 1 1714 1207 41 0 39 chr4 147981074 147981227 -7648893 - B1_Mus1 SINE Alu 0 148 2 1 1714 780 197 0 0 chr4 147981228 147981365 -7648755 + B1_Mur3 SINE Alu 13 149 0 1 1714 597 253 80 0 chr4 147981367 147981529 -7648591 - B3A SINE B2 -23 175 1 1 1714 1095 55 14 20 chr4 147981578 147981726 -7648394 + B1_Mus1 SINE Alu 2 148 0 1 1714 662 162 9 35 chr4 147981741 147981856 -7648264 - B1_Mur3 SINE Alu -36 113 2 1 1714 458 59 43 14 chr4 147982316 147982385 -7647735 - B2_Mm2 SINE B2 -44 151 81 1 1714 270 289 58 58 chr4 147982995 147983098 -7647022 - ID_B1 SINE B4 -87 137 35 1 1714 224 206 125 16 chr4 147983154 147983218 -7646902 - B1_Mur2 SINE Alu -33 116 46 1 1714 618 168 19 3 chr4 147983344 147983464 -7646656 - B1_Mur3 SINE Alu -10 139 15 1 1714 376 277 126 37 chr4 147983494 147983629 -7646491 - RSINE1 SINE B4 -4 161 15 1 1714 1106 83 14 0 chr4 147983633 147983777 -7646343 - B1_Mus1 SINE Alu 0 148 3 1 1714 393 200 179 0 chr4 147983796 147983891 -7646229 + B1_Mur2 SINE Alu 11 122 -27 1 1714 805 161 210 0 chr4 147984387 147984573 -7645547 - URR1B DNA MER1_type 0 225 1 1 1714 601 118 97 10 chr4 147985765 147985868 -7644252 - PB1D9 SINE Alu -7 113 2 1 1714 238 239 211 22 chr4 147989359 147989449 -7640671 - PB1D9 SINE Alu -13 107 1 1 1714 227 295 0 82 chr4 147993182 147993267 -7636853 - ID4_ SINE ID -4 79 2 1 1714 380 257 133 49 chr4 147993649 147993792 -7636328 - B3 SINE B2 -23 193 39 1 1714 539 294 66 0 chr4 147993977 147994113 -7636007 - B4A SINE B4 -67 225 81 1 1714 652 191 72 14 chr4 147994144 147994282 -7635838 + B1_Mus2 SINE Alu 2 147 0 1 1714 331 224 37 62 chr4 147994282 147994363 -7635757 - B4 SINE B4 -212 80 2 1 1714 482 270 76 85 chr4 147994448 147994541 -7635579 + ID_B1 SINE B4 2 222 -2 1 1714 690 124 92 8 chr4 147994541 147994671 -7635449 + B1_Mus1 SINE Alu 7 147 -1 1 1714 738 156 148 7 chr4 147995126 147995281 -7634839 - URR1A DNA MER1_type 0 226 50 1 1714 315 217 219 146 chr4 147995423 147995486 -7634634 + B3 SINE B2 9 92 -124 1 1714 1211 49 14 0 chr4 147995486 147995630 -7634490 + B1_Mus2 SINE Alu 2 147 0 1 1714 315 217 219 146 chr4 147995630 147995717 -7634403 + B3 SINE B2 93 170 -46 1 1714 276 202 86 57 chr4 147995710 147995740 -7634380 + MT2B LTR ERVL 127 159 -442 1 1714 356 208 64 19 chr4 147995740 147995859 -7634261 + B1_Mur4 SINE Alu 1 120 0 1 1714 485 283 54 14 chr4 147995886 147996033 -7634087 + B3 SINE B2 60 212 -4 1 1714 433 241 91 18 chr4 147996281 147996391 -7633729 + B1_Mm SINE Alu 12 129 -20 1 1714 280 207 247 22 chr4 147996375 147996464 -7633656 + B1_Mus2 SINE Alu 39 147 0 1 1714 1190 62 0 0 chr4 147997003 147997149 -7632971 + B1_Mus2 SINE Alu 2 147 0 1 1714 923 63 165 0 chr4 147997413 147997540 -7632580 + B1_Mur4 SINE Alu 1 148 -2 1 1714 881 245 85 35 chr4 147997647 147997989 -7632131 - RLTR15 LTR ERVK 0 359 1 1 1714 418 218 29 38 chr4 147998112 147998217 -7631903 - PB1D9 SINE Alu -16 104 1 1 1714 554 271 112 45 chr4 147998354 147998532 -7631588 + B3 SINE B2 24 213 -3 1 1714 1114 92 0 0 chr4 147998648 147998789 -7631331 + B1_Mus1 SINE Alu 1 141 -7 1 1714 188 0 0 69 chr4 147998802 147998831 -7631289 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1714 1589 43 0 0 chr4 147999663 147999851 -7630269 + B2_Mm1a SINE B2 1 188 -5 1 1714 536 200 157 0 chr4 147999861 147999976 -7630144 + B1_Mur3 SINE Alu 2 134 -15 1 1714 246 143 2 119 chr4 148001524 148001590 -7628530 - B1F SINE Alu -7 142 54 1 1714 288 308 52 7 chr4 148001614 148001730 -7628390 - MIR SINE MIR -95 173 50 2 1714 374 234 25 116 chr4 148001916 148002037 -7628083 - PB1D10 SINE Alu -6 111 2 3 1714 449 259 0 9 chr4 148002124 148002233 -7627887 - B1F SINE Alu -40 109 2 4 1714 289 302 55 28 chr4 148002233 148002260 -7627860 - B4 SINE B4 -207 85 56 5 1714 549 280 16 8 chr4 148002275 148002401 -7627719 - B1F2 SINE Alu -13 136 10 6 1714 237 182 0 22 chr4 148002458 148002503 -7627617 - B1F2 SINE Alu -103 46 3 7 1714 285 51 0 0 chr4 148002545 148002584 -7627536 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1714 1226 61 0 0 chr4 148002584 148002731 -7627389 - B1_Mus2 SINE Alu 0 147 1 9 1714 345 309 35 43 chr4 148002831 148002946 -7627174 - PB1D10 SINE Alu 0 117 4 1 1714 403 222 0 47 chr4 148002946 148003027 -7627093 - B1_Mur3 SINE Alu -72 77 1 1 1714 359 299 87 0 chr4 148003057 148003184 -7626936 - ID_B1 SINE B4 -1 223 86 1 1714 1189 163 29 5 chr4 148003224 148003428 -7626692 - B3 SINE B2 0 216 8 1 1714 291 85 0 0 chr4 148003428 148003475 -7626645 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1714 1071 73 0 0 chr4 148003486 148003623 -7626497 - B1_Mm SINE Alu 0 147 11 1 1714 502 258 35 107 chr4 148003491 148003660 -7626460 - B4 SINE B4 -71 221 65 1 1714 1319 67 78 0 chr4 148003963 148004142 -7625978 - B2_Mm2 SINE B2 -2 193 1 1 1714 571 248 8 30 chr4 148004234 148004367 -7625753 - B1F1 SINE Alu -2 147 18 1 1714 234 280 93 47 chr4 148004363 148004513 -7625607 - RLTR10B LTR ERVK -98 194 38 1 1714 1155 29 0 42 chr4 148004716 148004858 -7625262 + B1_Mus2 SINE Alu 1 136 -11 2 1714 318 26 0 0 chr4 148004858 148004897 -7625223 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1714 809 180 0 35 chr4 148004966 148005110 -7625010 - B1_Mus2 SINE Alu -8 139 1 2 1714 252 0 0 0 chr4 148005221 148005249 -7624871 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1714 1083 80 0 7 chr4 148005249 148005388 -7624732 - B1_Mus1 SINE Alu -9 139 2 2 1714 1372 76 16 0 chr4 148005411 148005595 -7624525 - B2_Mm1a SINE B2 -6 187 1 2 1714 410 0 20 0 chr4 148005730 148005780 -7624340 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1714 1108 53 15 0 chr4 148005781 148005914 -7624206 - B1_Mus1 SINE Alu -13 135 1 2 1714 498 172 284 0 chr4 148005929 148006045 -7624075 + B1_Mur1 SINE Alu 1 149 0 2 1714 1194 93 0 0 chr4 148006051 148006213 -7623907 + B2_Mm2 SINE B2 1 162 -33 2 1714 180 0 0 0 chr4 148006213 148006233 -7623887 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1714 552 291 0 52 chr4 148006263 148006437 -7623683 + B3A SINE B2 33 197 -1 3 1714 1708 209 64 132 chr4 148006522 148006869 -7623251 + RLTR18B LTR ERVK 1 328 -184 3 1714 1767 145 77 21 chr4 148006869 148007257 -7622863 + RMER17C LTR ERVK 1 410 0 3 1714 1708 209 64 132 chr4 148007257 148007281 -7622839 + RLTR18B LTR ERVK 329 348 -164 3 1714 1197 62 0 0 chr4 148007281 148007427 -7622693 + B1_Mus2 SINE Alu 2 147 0 3 1714 1708 209 64 132 chr4 148007427 148007599 -7622521 + RLTR18B LTR ERVK 349 508 -4 3 1714 233 239 55 33 chr4 148007751 148007848 -7622272 + ID_B1 SINE B4 31 135 -89 3 1714 362 211 315 27 chr4 148007848 148007994 -7622126 - RLTR30 LTR ERV1 -1 378 191 3 1714 279 0 0 0 chr4 148008208 148008239 -7621881 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1714 1174 78 0 0 chr4 148008239 148008381 -7621739 - B1_Mus2 SINE Alu -1 146 5 3 1714 197 83 28 0 chr4 148008434 148008470 -7621650 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1714 674 175 48 58 chr4 148008544 148008725 -7621395 + B3A SINE B2 1 192 -1 4 1714 593 84 0 16 chr4 148008733 148008835 -7621285 + B1_Mus1 SINE Alu 1 95 -22 4 1714 598 85 2 8 chr4 148008890 148008984 -7621136 + B1_Mus2 SINE Alu 30 147 0 4 1714 189 107 0 0 chr4 148009018 148009046 -7621074 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1714 436 203 38 0 chr4 148009097 148009188 -7620932 - B1F1 SINE Alu -43 106 5 4 1714 862 221 6 0 chr4 148009195 148009376 -7620744 - MER2 DNA MER2_type -71 274 93 4 1714 283 356 74 33 chr4 148009439 148009683 -7620437 - B4A SINE B4 -1 291 38 4 1714 498 246 38 45 chr4 148009700 148009832 -7620288 - B1F SINE Alu 0 149 19 4 1714 198 0 0 0 chr4 148009906 148009928 -7620192 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1714 802 125 0 0 chr4 148009943 148010055 -7620065 + B1_Mm SINE Alu 2 113 -34 4 1714 3313 24 40 0 chr4 148010056 148010436 -7619684 + MTA_Mm LTR MaLR 1 395 -1 5 1714 189 0 0 0 chr4 148010436 148010457 -7619663 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1714 1069 77 14 0 chr4 148010472 148010615 -7619505 + B1_Mm SINE Alu 2 146 -1 5 1714 1013 105 33 7 chr4 148010624 148010777 -7619343 - B2_Mm1t SINE B2 -14 179 23 5 1714 267 95 48 0 chr4 148010785 148010827 -7619293 - B1_Mm SINE Alu -51 96 53 5 1714 541 257 0 0 chr4 148010847 148010952 -7619168 - ID_B1 SINE B4 -41 183 79 5 1714 441 0 0 0 chr4 148010952 148011001 -7619119 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1714 884 146 22 0 chr4 148011031 148011168 -7618952 - B1_Mur4 SINE Alu -1 149 10 5 1714 549 247 11 54 chr4 148011168 148011352 -7618768 + L1MA5 LINE L1 6120 6295 -5 5 1714 251 295 63 13 chr4 148011355 148011434 -7618686 + ID4 SINE ID 1 83 0 5 1714 27 0 0 0 chr4 148011445 148011472 -7618648 + AT_rich Low_complexity Low_complexity 1 27 0 6 1714 541 239 12 0 chr4 148011494 148011612 -7618508 - B3 SINE B2 -72 126 2 6 1714 482 287 124 26 chr4 148011631 148011660 -7618460 - B3 SINE B2 -4 212 184 6 1714 1228 54 0 13 chr4 148011660 148011809 -7618311 - B1_Mm SINE Alu 0 147 1 6 1714 589 228 73 10 chr4 148011809 148011972 -7618148 - B3A SINE B2 -33 183 1 6 1714 195 42 0 0 chr4 148012120 148012144 -7617976 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1714 241 204 18 36 chr4 148012169 148012225 -7617895 - B2_Mm2 SINE B2 -94 101 47 6 1714 203 314 98 0 chr4 148012492 148012594 -7617526 - MIR SINE MIR -37 225 114 6 1714 316 235 0 25 chr4 148012707 148012807 -7617313 - L1M5 LINE L1 -708 5486 5389 6 1714 445 144 22 0 chr4 148012897 148012987 -7617133 + CT-rich Low_complexity Low_complexity 1 92 0 6 1714 1018 129 0 7 chr4 148012987 148013135 -7616985 - B1_Mus1 SINE Alu -1 147 1 6 1714 713 142 0 0 chr4 148013159 148013265 -7616855 + B2_Mm2 SINE B2 2 107 -88 7 1714 1149 84 0 0 chr4 148013448 148013591 -7616529 - B1_Mus1 SINE Alu -1 147 5 7 1714 266 232 63 38 chr4 148013660 148013758 -7616362 + RSINE1 SINE B4 83 136 -29 7 1714 238 189 0 0 chr4 148013791 148013828 -7616292 + B1_Mur4 SINE Alu 6 42 -108 7 1714 312 241 0 0 chr4 148013858 148013916 -7616204 + B1F SINE Alu 3 60 -89 7 1714 21 36 0 0 chr4 148013955 148013983 -7616137 + AT_rich Low_complexity Low_complexity 1 28 0 7 1714 315 285 3 16 chr4 148014103 148014189 -7615931 + ID4 SINE ID 6 90 -62 7 1714 477 280 34 0 chr4 148014282 148014400 -7615720 + RSINE1 SINE B4 25 146 -19 7 1714 198 71 0 0 chr4 148014414 148014442 -7615678 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1714 248 0 0 30 chr4 148014517 148014550 -7615570 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1714 1167 88 0 0 chr4 148014559 148014706 -7615414 + B1_Mus1 SINE Alu 2 148 0 8 1714 319 291 75 46 chr4 148014746 148014919 -7615201 - Charlie4a DNA MER1_type -325 183 6 8 1714 232 128 26 0 chr4 148014979 148015018 -7615102 + ID4_ SINE ID 3 42 -41 8 1714 1618 134 219 6 chr4 148015110 148015425 -7614695 - RLTR14 LTR ERV1 0 382 1 8 1714 830 179 0 15 chr4 148015914 148016050 -7614070 + B1_Mus1 SINE Alu 15 148 0 8 1714 1079 58 0 80 chr4 148016333 148016483 -7613637 + B1_Mus1 SINE Alu 1 138 -10 8 1714 226 0 0 56 chr4 148016483 148016519 -7613601 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1714 723 119 0 0 chr4 148016781 148016882 -7613238 + B2_Mm2 SINE B2 1 101 -94 8 1714 450 0 0 0 chr4 148016994 148017044 -7613076 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1714 661 218 96 0 chr4 148017080 148017236 -7612884 + MTD LTR MaLR 233 403 -16 8 1714 461 250 0 18 chr4 148018544 148018654 -7611466 - PB1D10 SINE Alu -9 108 1 9 1714 1196 128 43 0 chr4 148018746 148018934 -7611186 + URR1B DNA MER1_type 30 225 0 9 1714 376 244 222 18 chr4 148019150 148019321 -7610799 - B3 SINE B2 -10 206 1 9 1714 1474 50 33 0 chr4 148019331 148019513 -7610607 - B2_Mm1a SINE B2 -4 189 2 9 1714 250 303 53 35 chr4 148019517 148019630 -7610490 - PB1D10 SINE Alu 0 117 3 9 1714 241 304 11 32 chr4 148019926 148020021 -7610099 - LTR37A LTR ERV1 -109 317 225 9 1714 356 333 28 14 chr4 148020072 148020215 -7609905 - B1_Mur2 SINE Alu -2 147 3 9 1714 667 262 4 118 chr4 148020215 148020324 -7609796 - ID SINE ID -141 83 1 9 1714 471 63 0 0 chr4 148020447 148020510 -7609610 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 9 1714 256 307 141 23 chr4 148020672 148020966 -7609154 - L1ME2 LINE L1 -167 6006 5678 9 1714 1099 81 0 0 chr4 148021247 148021383 -7608737 + B1_Mus1 SINE Alu 1 136 -12 1 1714 1334 101 17 0 chr4 148021446 148021624 -7608496 + B2_Mm2 SINE B2 2 182 -13 1 1714 243 0 0 0 chr4 148021624 148021651 -7608469 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1714 232 164 15 154 chr4 148021652 148021708 -7608412 - B1F1 SINE Alu -13 136 90 1 1714 243 322 0 17 chr4 148021708 148021768 -7608352 + ID SINE ID 1 59 -165 1 1714 414 163 4 6 chr4 148021756 148021833 -7608287 - PB1D9 SINE Alu -233 81 6 1 1714 549 0 0 0 chr4 148021833 148021894 -7608226 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1714 554 312 49 0 chr4 148021906 148022050 -7608070 - B3A SINE B2 -30 168 18 1 1714 224 319 0 28 chr4 148022135 148022206 -7607914 - B1F1 SINE Alu -1 148 80 1 1714 239 157 0 19 chr4 148022218 148022270 -7607850 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1714 236 88 0 29 chr4 148022270 148022305 -7607815 - U2 snRNA snRNA -149 39 6 1 1714 653 212 0 8 chr4 148022310 148022429 -7607691 - PB1D7 SINE Alu 0 120 3 1 1714 817 202 37 0 chr4 148022441 148022604 -7607516 - B3 SINE B2 -47 169 1 1 1714 827 139 0 0 chr4 148022616 148022738 -7607382 + B1_Mus1 SINE Alu 11 132 -16 1 1714 263 330 76 38 chr4 148022816 148023046 -7607074 + L2a LINE L2 2918 3161 -265 1 1714 729 231 14 0 chr4 148023122 148023265 -7606855 - RSINE1 SINE B4 -18 147 3 1 1714 307 200 12 118 chr4 148023465 148023531 -7606589 - B4A SINE B4 -1 291 234 1 1714 889 172 42 21 chr4 148023531 148023721 -7606399 - B2_Mm2 SINE B2 -1 194 1 1 1714 307 200 12 118 chr4 148023721 148023739 -7606381 - B4A SINE B4 -59 233 216 1 1714 180 77 0 0 chr4 148023777 148023803 -7606317 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1714 844 159 22 0 chr4 148023810 148023948 -7606172 - B1_Mur2 SINE Alu -8 141 1 1 1714 624 269 0 0 chr4 148023961 148024102 -7606018 - B4A SINE B4 -68 224 84 1 1714 252 77 0 0 chr4 148024258 148024297 -7605823 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 1 1714 1131 119 0 0 chr4 148024339 148024515 -7605605 + (TTC)n Simple_repeat Simple_repeat 3 178 0 1 1714 337 246 118 8 chr4 148024546 148024665 -7605455 + LTR37A LTR ERV1 292 423 -3 1 1714 399 190 25 12 chr4 148024849 148024929 -7605191 + ID4 SINE ID 1 81 -2 1 1714 394 271 2 106 chr4 148024977 148025101 -7605019 + B1F2 SINE Alu 1 111 -39 1 1714 1022 90 7 7 chr4 148025642 148025788 -7604332 - B1_Mus1 SINE Alu -1 147 2 1 1714 723 139 69 49 chr4 148025802 148025946 -7604174 - B1_Mus2 SINE Alu 0 147 1 1 1714 748 214 14 7 chr4 148025948 148026094 -7604026 - B1_Mur1 SINE Alu 0 149 3 1 1714 743 69 20 0 chr4 148026330 148026431 -7603689 - B2_Mm1t SINE B2 -14 179 77 1 1714 278 0 50 0 chr4 148026434 148026474 -7603646 + B2_Mm1t SINE B2 138 179 -14 1 1714 354 57 38 0 chr4 148026503 148026556 -7603564 + B2_Mm2 SINE B2 47 101 -94 1 1714 504 0 0 0 chr4 148026599 148026655 -7603465 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1714 1136 58 0 0 chr4 148026655 148026794 -7603326 - B2_Mm2 SINE B2 -49 146 8 1 1714 1512 38 43 0 chr4 148026801 148026986 -7603134 - B2_Mm1a SINE B2 0 193 1 1 1714 1055 215 106 45 chr4 148027003 148027036 -7603084 + MTD LTR MaLR 79 112 -309 1 1714 684 144 53 18 chr4 148027036 148027149 -7602971 - PB1D9 SINE Alu -2 118 2 1 1714 1251 184 83 22 chr4 148027149 148027427 -7602693 + MTD LTR MaLR 113 407 -12 1 1714 278 304 0 102 chr4 148027434 148027522 -7602598 - RSINE1 SINE B4 -85 80 2 1 1714 724 269 97 31 chr4 148027607 148027864 -7602256 - B4A SINE B4 -18 274 1 1 1714 315 321 26 9 chr4 148027938 148028051 -7602069 - MER77 LTR ERVL -37 570 456 1 1714 2714 73 145 139 chr4 148028051 148028560 -7601560 - RLTR1B LTR ERV1 0 512 1 1 1714 186 103 0 0 chr4 148028622 148028651 -7601469 + (CAT)n Simple_repeat Simple_repeat 2 30 0 1 1714 264 30 0 0 chr4 148028683 148028716 -7601404 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1714 1142 81 0 26 chr4 148029532 148029684 -7600436 + B1_Mus1 SINE Alu 1 148 0 1 1714 517 276 26 8 chr4 148029702 148029819 -7600301 - RSINE1 SINE B4 -44 121 3 1 1714 880 222 21 37 chr4 148029848 148030051 -7600069 - B3 SINE B2 -6 210 9 1 1714 601 207 20 60 chr4 148030328 148030477 -7599643 - B1F SINE Alu -6 143 1 1 1714 769 301 107 42 chr4 148031377 148031807 -7598313 - L2a LINE L2 0 3426 2969 1 1714 272 228 37 25 chr4 148032283 148032364 -7597756 - ID4 SINE ID -1 82 1 1 1714 746 248 0 20 chr4 148032364 148032516 -7597604 - B1_Mur1 SINE Alu 0 149 1 1 1714 257 122 93 93 chr4 148032543 148032597 -7597523 - B1_Mus2 SINE Alu -19 128 75 1 1714 218 186 47 0 chr4 148032643 148032686 -7597434 + MIR SINE MIR 100 144 -118 1 1714 363 22 0 22 chr4 148033552 148033598 -7596522 - HAL1-3A_ME LINE L1 -839 2019 1975 1 1714 606 279 78 62 chr4 148033620 148033910 -7596210 - B4 SINE B4 -19 273 17 1 1714 951 113 58 32 chr4 148033877 148034032 -7596088 - B2_Mm2 SINE B2 -4 191 33 1 1714 1203 61 7 0 chr4 148034032 148034179 -7595941 + B1_Mus1 SINE Alu 1 148 0 1 1714 289 75 0 0 chr4 148034215 148034255 -7595865 - B3 SINE B2 -176 40 1 1 1714 249 213 91 48 chr4 148034830 148034944 -7595176 - MIRc SINE MIR -96 172 52 1 1714 259 258 0 15 chr4 148035005 148035072 -7595048 - MER102b DNA MER1_type -158 183 118 1 1714 295 200 61 15 chr4 148035096 148035162 -7594958 + ID4_ SINE ID 4 72 -11 1 1714 840 244 50 5 chr4 148035209 148035411 -7594709 - ID_B1 SINE B4 -5 219 9 1 1714 1202 48 0 13 chr4 148035425 148035436 -7594684 - B1_Mm SINE Alu 0 147 138 1 1714 206 32 32 0 chr4 148035436 148035467 -7594653 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1714 1202 48 0 13 chr4 148035467 148035604 -7594516 - B1_Mm SINE Alu -10 137 1 1 1714 374 287 11 0 chr4 148035660 148035754 -7594366 + PB1D10 SINE Alu 5 99 -18 1 1714 393 270 168 34 chr4 148035762 148035881 -7594239 + RSINE1 SINE B4 21 155 -10 1 1714 205 235 39 19 chr4 148036007 148036059 -7594061 - L2b LINE L2 -5 3370 3318 1 1714 446 288 35 14 chr4 148037723 148037864 -7592256 + RSINE1 SINE B4 9 152 -13 1 1714 290 282 14 0 chr4 148037979 148038050 -7592070 + MER81 DNA AcHobo 3 74 -40 1 1714 723 210 50 7 chr4 148038878 148039017 -7591103 - B1_Mur1 SINE Alu 0 149 5 1 1714 339 82 0 0 chr4 148039023 148039030 -7591090 + (TCCC)n Simple_repeat Simple_repeat 3 9 0 1 1714 829 28 19 0 chr4 148039030 148039138 -7590982 + (TTC)n Simple_repeat Simple_repeat 1 110 0 1 1714 339 82 0 0 chr4 148039138 148039179 -7590941 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 1 1714 987 93 0 0 chr4 148039179 148039319 -7590801 + (TTTC)n Simple_repeat Simple_repeat 3 142 0 1 1714 896 57 103 32 chr4 148039319 148039445 -7590675 - B1_Mus2 SINE Alu -12 135 1 1 1714 694 204 51 119 chr4 148039450 148039679 -7590441 - ID_B1 SINE B4 0 224 6 1 1714 375 289 72 79 chr4 148039782 148039808 -7590312 - B1F SINE Alu 0 149 126 1 1714 189 0 0 0 chr4 148039808 148039829 -7590291 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1714 397 303 0 68 chr4 148039829 148039841 -7590279 - PB1D7 SINE Alu 0 120 112 1 1714 188 34 0 33 chr4 148039841 148039871 -7590249 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1714 1158 83 0 0 chr4 148039871 148040016 -7590104 - B1_Mus2 SINE Alu -1 146 2 1 1714 397 303 0 68 chr4 148040016 148040114 -7590006 - PB1D7 SINE Alu -9 111 17 1 1714 1194 49 0 14 chr4 148040563 148040709 -7589411 - B1_Mus1 SINE Alu 0 148 5 1 1714 222 37 0 0 chr4 148043357 148043384 -7586736 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1714 1013 93 65 0 chr4 148043386 148043525 -7586595 - B1_Mus1 SINE Alu 0 148 1 1 1714 947 104 28 7 chr4 148043527 148043672 -7586448 - B1_Mur4 SINE Alu -2 148 1 1 1714 1332 20 0 0 chr4 148043779 148043926 -7586194 - B1_Mm SINE Alu 0 147 1 1 1714 339 211 0 0 chr4 148043926 148043997 -7586123 - B3 SINE B2 -80 136 66 1 1714 292 236 41 82 chr4 148044006 148044103 -7586017 - B4A SINE B4 -193 99 7 1 1714 219 36 0 0 chr4 148044134 148044162 -7585958 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1714 1204 57 0 0 chr4 148044165 148044306 -7585814 - B1_Mus1 SINE Alu -6 142 2 1 1714 228 299 173 10 chr4 148044307 148044404 -7585716 - PB1D9 SINE Alu -11 139 9 1 1714 199 0 31 31 chr4 148044413 148044445 -7585675 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 1 1714 1001 254 5 0 chr4 148044450 148044655 -7585465 - ID_B1 SINE B4 -13 211 6 1 1714 591 109 9 26 chr4 148046119 148046199 -7583921 + (TCC)n Simple_repeat Simple_repeat 1 81 0 1 1714 1167 117 0 0 chr4 148046199 148046379 -7583741 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1714 591 109 9 26 chr4 148046379 148046394 -7583726 + (TCC)n Simple_repeat Simple_repeat 2 15 0 1 1714 1097 123 6 0 chr4 148046394 148046573 -7583547 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1714 591 109 9 26 chr4 148046573 148046589 -7583531 + (TCC)n Simple_repeat Simple_repeat 1 16 0 1 1714 971 246 10 10 chr4 148046589 148046794 -7583326 - B3 SINE B2 -11 205 1 1 1714 254 0 0 77 chr4 148046804 148046832 -7583288 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1714 1218 68 0 0 chr4 148046832 148046979 -7583141 - B1_Mus2 SINE Alu 0 147 1 1 1714 254 0 0 77 chr4 148046979 148046989 -7583131 + (T)n Simple_repeat Simple_repeat 1 8 0 1 1714 527 217 66 0 chr4 148047174 148047280 -7582840 + RSINE1 SINE B4 5 117 -48 2 1714 387 257 18 35 chr4 148047593 148047706 -7582414 + PB1D10 SINE Alu 1 111 -6 2 1714 404 321 0 26 chr4 148047824 148047939 -7582181 + MER20 DNA MER1_type 88 199 -20 2 1714 350 274 216 54 chr4 148048122 148048188 -7581932 - ID_B1 SINE B4 -7 217 157 2 1714 1263 41 0 0 chr4 148048188 148048335 -7581785 - B1_Mus2 SINE Alu 0 147 1 2 1714 350 274 216 54 chr4 148048335 148048453 -7581667 - ID_B1 SINE B4 -68 156 3 2 1714 273 232 14 42 chr4 148050695 148050767 -7579353 + MIRb SINE MIR 112 181 -87 2 1714 267 130 0 0 chr4 148051057 148051111 -7579009 + (C)n Simple_repeat Simple_repeat 1 54 0 2 1714 234 91 0 0 chr4 148051909 148051942 -7578178 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 2 1714 1243 48 0 0 chr4 148051942 148052088 -7578032 - B1_Mus2 SINE Alu 0 147 2 2 1714 210 208 0 0 chr4 148052102 148052155 -7577965 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1714 352 202 81 63 chr4 148052317 148052428 -7577692 + PB1D7 SINE Alu 1 113 -7 2 1714 563 250 191 29 chr4 148053142 148053315 -7576805 + ID_B1 SINE B4 10 210 -14 2 1714 1181 42 0 34 chr4 148053316 148053465 -7576655 + B1_Mm SINE Alu 1 144 -3 2 1714 234 0 0 0 chr4 148053465 148053491 -7576629 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1714 384 22 0 0 chr4 148053500 148053545 -7576575 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 2 1714 566 299 57 40 chr4 148054274 148054482 -7575638 - ID_B1 SINE B4 -88 204 3 2 1714 273 274 16 0 chr4 148054559 148054621 -7575499 + MER5A DNA MER1_type 10 72 -117 2 1714 691 228 0 26 chr4 148054640 148054793 -7575327 - ID_B1 SINE B4 0 224 76 2 1714 264 341 12 0 chr4 148054865 148054950 -7575170 + MER5A DNA MER1_type 75 160 -29 2 1714 753 12 0 0 chr4 148054986 148055072 -7575048 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1714 343 286 176 7 chr4 148055175 148055323 -7574797 - MIRc SINE MIR -84 184 12 2 1714 225 0 0 0 chr4 148057106 148057131 -7572989 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1714 456 19 0 0 chr4 148057131 148057183 -7572937 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1714 650 246 52 35 chr4 148057190 148057363 -7572757 - B3A SINE B2 -18 180 5 2 1714 210 71 0 0 chr4 148058328 148058356 -7571764 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1714 816 132 70 49 chr4 148058381 148058524 -7571596 - B1_Mm SINE Alu 0 147 2 2 1714 1102 95 7 0 chr4 148058642 148058789 -7571331 - B1_Mus1 SINE Alu 0 148 1 2 1714 22 35 0 0 chr4 148058800 148058829 -7571291 + AT_rich Low_complexity Low_complexity 1 29 0 2 1714 544 216 97 0 chr4 148058848 148058982 -7571138 - RSINE1 SINE B4 -17 148 2 2 1714 192 77 0 0 chr4 148059028 148059054 -7571066 + (TCG)n Simple_repeat Simple_repeat 1 26 0 2 1714 220 377 21 48 chr4 148059274 148059419 -7570701 + MIRb SINE MIR 21 161 -107 2 1714 267 103 0 0 chr4 148060011 148060050 -7570070 + (TGGGGG)n Simple_repeat Simple_repeat 2 40 0 2 1714 196 209 23 0 chr4 148060056 148060099 -7570021 + L2a LINE L2 3371 3414 -12 2 1714 659 224 50 117 chr4 148060112 148060334 -7569786 + B4A SINE B4 31 237 -55 2 1714 248 338 75 14 chr4 148061160 148061307 -7568813 + Charlie5 DNA MER1_type 2427 2582 -42 2 1714 209 291 17 29 chr4 148061338 148061422 -7568698 - MIRc SINE MIR -103 173 87 2 1714 242 140 59 20 chr4 148061703 148061754 -7568366 - PB1D10 SINE Alu -1 116 64 2 1714 424 260 19 9 chr4 148061711 148061816 -7568304 - ID_B1 SINE B4 -8 216 111 2 1714 474 219 160 23 chr4 148062861 148062992 -7567128 - B1F2 SINE Alu 0 149 1 2 1714 551 258 63 50 chr4 148063023 148063110 -7567010 - ID_B1 SINE B4 -10 214 128 2 1714 1068 158 179 0 chr4 148063110 148063300 -7566820 + URR1A DNA MER1_type 1 224 -2 2 1714 551 258 63 50 chr4 148063300 148063371 -7566749 - ID_B1 SINE B4 -97 127 54 2 1714 933 113 0 0 chr4 148063562 148063703 -7566417 + (GAA)n Simple_repeat Simple_repeat 3 143 0 2 1714 248 111 0 0 chr4 148063773 148063818 -7566302 + B1_Mur4 SINE Alu 106 150 0 2 1714 474 297 99 9 chr4 148064028 148064249 -7565871 - L1MB3 LINE L1 -119 6064 5824 2 1714 189 0 0 0 chr4 148064258 148064279 -7565841 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1714 335 308 19 37 chr4 148064285 148064393 -7565727 + ID_B1 SINE B4 5 110 -114 2 1714 696 251 174 16 chr4 148064557 148064804 -7565316 - B4 SINE B4 -2 290 5 2 1714 845 309 39 18 chr4 148064967 148065250 -7564870 + B4A SINE B4 1 289 -3 2 1714 398 280 11 0 chr4 148065696 148065789 -7564331 + MLT1N2 LTR MaLR 89 182 -380 2 1714 1249 178 85 82 chr4 148066022 148066154 -7563966 + ORR1D1 LTR MaLR 41 160 -214 2 1714 2623 146 64 46 chr4 148066154 148066190 -7563930 - RLTR11A2 LTR ERVK 0 527 506 2 1714 988 87 72 0 chr4 148066190 148066328 -7563792 - B1_Mus1 SINE Alu 0 148 1 2 1714 2623 146 64 46 chr4 148066328 148066809 -7563311 - RLTR11A2 LTR ERVK -22 505 1 2 1714 1249 178 85 82 chr4 148066809 148067007 -7563113 + ORR1D1 LTR MaLR 161 372 -2 2 1714 293 312 26 52 chr4 148067065 148067180 -7562940 - B3A SINE B2 0 198 87 2 1714 1036 44 0 7 chr4 148067227 148067364 -7562756 + B1_Mus1 SINE Alu 13 148 0 2 1714 348 57 71 0 chr4 148067364 148067434 -7562686 + (CAAAA)n Simple_repeat Simple_repeat 1 75 0 2 1714 598 261 0 0 chr4 148067489 148067623 -7562497 + B1_Mur4 SINE Alu 13 146 -4 2 1714 906 329 66 19 chr4 148067871 148068167 -7561953 + MER63D DNA AcHobo 193 505 -556 2 1714 297 0 0 0 chr4 148068167 148068200 -7561920 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1714 906 329 66 19 chr4 148068200 148068327 -7561793 + MER63D DNA AcHobo 506 635 -426 2 1714 325 175 0 0 chr4 148068586 148068643 -7561477 - B1_Mur4 SINE Alu -81 69 13 2 1714 396 269 1 121 chr4 148068669 148068811 -7561309 + B4A SINE B4 111 236 -56 2 1714 703 208 14 14 chr4 148068819 148068965 -7561155 + RSINE1 SINE B4 11 156 -9 2 1714 303 314 36 42 chr4 148068965 148069004 -7561116 + B2_Mm2 SINE B2 31 193 -2 2 1714 292 263 40 0 chr4 148068990 148069066 -7561054 + B4A SINE B4 214 292 0 2 1714 267 243 92 26 chr4 148069138 148069150 -7560970 + ID4_ SINE ID 3 43 -40 2 1714 284 218 55 0 chr4 148069150 148069205 -7560915 + tRNA-Ala-GCY_ tRNA tRNA 7 64 -11 2 1714 244 250 0 0 chr4 148069255 148069307 -7560813 + B4A SINE B4 219 270 -22 2 1714 288 0 0 0 chr4 148069391 148069423 -7560697 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1714 397 295 0 0 chr4 148069510 148069622 -7560498 + L1MC4a LINE L1 5726 5837 -2045 2 1714 227 54 27 0 chr4 148069862 148069899 -7560221 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1714 320 179 14 56 chr4 148070246 148070317 -7559803 + B3 SINE B2 136 203 -13 2 1714 677 230 7 20 chr4 148070356 148070507 -7559613 - B1_Mur3 SINE Alu 0 149 1 2 1714 226 300 12 24 chr4 148070545 148070627 -7559493 + MER5A DNA MER1_type 60 140 -49 2 1714 255 125 0 0 chr4 148070783 148070823 -7559297 + (CACCAT)n Simple_repeat Simple_repeat 6 45 0 2 1714 270 0 0 0 chr4 148070823 148070853 -7559267 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1714 547 271 14 28 chr4 148070854 148070998 -7559122 - RSINE1 SINE B4 -16 149 8 2 1714 228 274 71 0 chr4 148071131 148071215 -7558905 + MER5A1 DNA MER1_type 27 116 -50 2 1714 981 200 39 10 chr4 148071246 148071453 -7558667 - B3 SINE B2 0 216 4 2 1714 749 261 0 0 chr4 148071472 148071614 -7558506 - B1_Mur1 SINE Alu -3 146 5 2 1714 222 105 0 0 chr4 148071615 148071653 -7558467 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2 1714 459 280 143 25 chr4 148071657 148071818 -7558302 - ID_B1 SINE B4 0 224 45 2 1714 799 263 15 35 chr4 148071840 148072041 -7558079 + B3A SINE B2 2 198 0 2 1714 183 252 240 47 chr4 148072222 148072351 -7557769 + MER5B DNA MER1_type 24 177 -1 2 1714 271 171 0 41 chr4 148072554 148072627 -7557493 + CT-rich Low_complexity Low_complexity 2 71 0 2 1714 367 292 9 19 chr4 148072627 148072735 -7557385 - ID_B1 SINE B4 -4 220 114 2 1714 463 318 8 0 chr4 148072802 148072934 -7557186 - ID_B1 SINE B4 -90 134 2 2 1714 480 224 148 23 chr4 148074346 148074474 -7555646 + B1_Mur2 SINE Alu 5 148 -1 2 1714 336 24 0 0 chr4 148075403 148075444 -7554676 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1714 327 374 38 13 chr4 148076704 148076861 -7553259 - MIRb SINE MIR -87 181 21 2 1714 294 29 0 0 chr4 148076960 148076995 -7553125 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2 1714 515 269 39 177 chr4 148076995 148077329 -7552791 - B4 SINE B4 -2 290 3 2 1714 210 254 0 17 chr4 148077828 148077888 -7552232 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1714 232 386 27 20 chr4 148077950 148078098 -7552022 - MIRb SINE MIR -70 198 50 2 1714 530 208 0 3 chr4 148078285 148078579 -7551541 + (CA)n Simple_repeat Simple_repeat 1 293 0 2 1714 305 206 39 52 chr4 148079219 148079296 -7550824 - MIRc SINE MIR -110 158 83 2 1714 232 333 94 9 chr4 148079889 148079995 -7550125 - L2a LINE L2 -54 3372 3258 2 1714 191 351 42 11 chr4 148080403 148080498 -7549622 + MIR SINE MIR 28 125 -137 2 1714 297 0 0 0 chr4 148081169 148081202 -7548918 + (CTG)n Simple_repeat Simple_repeat 1 33 0 2 1714 227 284 0 0 chr4 148082984 148083051 -7547069 + C-rich Low_complexity Low_complexity 1 67 0 2 1714 347 298 67 15 chr4 148083707 148083843 -7546277 - MIRb SINE MIR -104 164 15 2 1714 417 86 0 0 chr4 148084865 148084923 -7545197 + (GGA)n Simple_repeat Simple_repeat 2 59 0 2 1714 1538 122 9 0 chr4 148085182 148085403 -7544717 - URR1A DNA MER1_type 0 226 4 2 1714 514 233 33 99 chr4 148086427 148086608 -7543512 + MER121 Unknown Unknown 71 239 -173 2 1714 247 224 0 0 chr4 148087551 148087609 -7542511 - MIRc SINE MIR -99 169 112 2 1714 188 245 20 20 chr4 148087740 148087790 -7542330 + MIR SINE MIR 108 157 -105 3 1714 231 227 0 0 chr4 148088848 148088892 -7541228 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1714 264 163 19 58 chr4 148089366 148089470 -7540650 + GA-rich Low_complexity Low_complexity 1 100 0 3 1714 23 33 0 0 chr4 148090200 148090230 -7539890 + AT_rich Low_complexity Low_complexity 1 30 0 3 1714 562 262 147 64 chr4 148090381 148090646 -7539474 + B4 SINE B4 2 288 -4 3 1714 653 216 151 54 chr4 148090687 148090853 -7539267 - B3A SINE B2 -15 183 2 3 1714 216 0 0 0 chr4 148090890 148090914 -7539206 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1714 450 53 0 0 chr4 148090917 148090974 -7539146 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1714 518 301 41 9 chr4 148091471 148091692 -7538428 - L1ME4a LINE L1 -226 5898 5671 3 1714 1578 67 0 2 chr4 148091706 148092111 -7538009 + (TTC)n Simple_repeat Simple_repeat 1 404 0 3 1714 207 0 0 0 chr4 148092123 148092146 -7537974 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1714 1121 95 0 7 chr4 148092146 148092286 -7537834 - B1_Mus1 SINE Alu -8 140 1 3 1714 819 263 33 19 chr4 148092338 148092551 -7537569 + B3 SINE B2 1 216 0 3 1714 1244 117 26 11 chr4 148092553 148092743 -7537377 - B2_Mm2 SINE B2 -2 193 1 3 1714 289 196 0 0 chr4 148092744 148092800 -7537320 - B4A SINE B4 -236 56 1 3 1714 1484 72 0 40 chr4 148092863 148093065 -7537055 + B2_Mm2 SINE B2 2 195 0 3 1714 339 323 89 42 chr4 148093065 148093233 -7536887 + B4A SINE B4 44 219 -73 3 1714 327 104 0 0 chr4 148093443 148093491 -7536629 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1714 189 107 0 0 chr4 148093491 148093519 -7536601 + (CG)n Simple_repeat Simple_repeat 1 28 0 3 1714 627 266 50 0 chr4 148093579 148093718 -7536402 - RSINE1 SINE B4 -17 148 3 3 1714 226 243 331 6 chr4 148093775 148093899 -7536221 - MIR SINE MIR -81 187 21 3 1714 1366 40 11 0 chr4 148094330 148094507 -7535613 + (GGA)n Simple_repeat Simple_repeat 1 179 0 3 1714 248 119 0 48 chr4 148094719 148094767 -7535353 + T-rich Low_complexity Low_complexity 15 59 0 3 1714 1059 43 27 60 chr4 148094767 148094916 -7535204 - B1_Mus2 SINE Alu 0 147 4 3 1714 248 119 0 48 chr4 148094916 148094929 -7535191 + T-rich Low_complexity Low_complexity 2 14 0 3 1714 1090 83 7 7 chr4 148094930 148095075 -7535045 - B1_Mm SINE Alu -1 146 2 3 1714 632 301 94 0 chr4 148095158 148095361 -7534759 + ID_B1 SINE B4 3 224 0 3 1714 40 37 0 0 chr4 148095365 148095419 -7534701 + AT_rich Low_complexity Low_complexity 1 54 0 3 1714 653 275 175 0 chr4 148096549 148096789 -7533331 - B4A SINE B4 -10 282 1 3 1714 299 216 55 37 chr4 148097161 148097243 -7532877 + PB1 SINE Alu 2 118 -9 3 1714 232 286 14 0 chr4 148097765 148097835 -7532285 - ID4 SINE ID -11 72 2 3 1714 314 215 12 25 chr4 148097837 148097918 -7532202 - MIRb SINE MIR -146 122 43 3 1714 496 235 8 50 chr4 148098209 148098330 -7531790 + PB1D7 SINE Alu 5 120 0 3 1714 488 224 41 56 chr4 148098982 148098996 -7531124 + ID_B1 SINE B4 75 145 -147 3 1714 324 218 127 75 chr4 148098996 148099130 -7530990 + B1_Mur4 SINE Alu 10 150 0 3 1714 488 224 41 56 chr4 148099130 148099147 -7530973 + ID_B1 SINE B4 146 248 -44 3 1714 232 284 11 54 chr4 148099336 148099429 -7530691 + RSINE1 SINE B4 20 108 -57 3 1714 24 53 0 0 chr4 148099478 148099516 -7530604 + AT_rich Low_complexity Low_complexity 1 38 0 3 1714 554 208 16 99 chr4 148099656 148099848 -7530272 - MER96B DNA hAT -108 309 134 3 1714 459 288 23 0 chr4 148100029 148100161 -7529959 - ID_B1 SINE B4 -7 217 83 3 1714 246 260 95 48 chr4 148100188 148100293 -7529827 - PB1D10 SINE Alu 0 117 8 3 1714 327 310 166 15 chr4 148100400 148100665 -7529455 - L1MB8 LINE L1 -71 6107 5803 3 1714 496 290 84 28 chr4 148100769 148100982 -7529138 - B4A SINE B4 -58 234 10 3 1714 253 270 19 66 chr4 148100999 148101118 -7529002 - L1MB8 LINE L1 -370 5808 5675 3 1714 725 200 14 7 chr4 148101137 148101149 -7528971 - RSINE1 SINE B4 -11 154 142 3 1714 528 16 0 0 chr4 148101149 148101210 -7528910 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1714 725 202 15 8 chr4 148101210 148101346 -7528774 - RSINE1 SINE B4 -24 141 4 3 1714 681 126 19 0 chr4 148101374 148101477 -7528643 - PB1D9 SINE Alu -15 105 1 3 1714 363 347 46 21 chr4 148101500 148101694 -7528426 - L1MB8 LINE L1 -528 5656 5458 3 1714 979 266 9 5 chr4 148102058 148102277 -7527843 - ID_B1 SINE B4 -4 220 1 3 1714 632 292 13 65 chr4 148103095 148103326 -7526794 + MER33 DNA MER1_type 10 228 -96 3 1714 487 324 105 0 chr4 148103350 148103597 -7526523 + B4A SINE B4 1 273 -19 3 1714 277 262 0 24 chr4 148103626 148103708 -7526412 + (CATA)n Simple_repeat Simple_repeat 1 80 0 3 1714 1158 70 0 0 chr4 148103780 148103923 -7526197 - B1_Mm SINE Alu 0 147 5 3 1714 439 232 0 10 chr4 148104170 148104266 -7525854 + PB1D10 SINE Alu 1 95 -22 3 1714 656 241 0 0 chr4 148104180 148104313 -7525807 + ID_B1 SINE B4 91 223 -1 3 1714 322 304 20 85 chr4 148104313 148104365 -7525755 - YREP_Mm Unknown Unknown -1495 301 130 3 1714 606 203 15 30 chr4 148104792 148104924 -7525196 - B1F2 SINE Alu -7 142 13 3 1714 21 36 0 0 chr4 148104960 148104988 -7525132 + AT_rich Low_complexity Low_complexity 1 28 0 3 1714 509 80 0 13 chr4 148105000 148105056 -7525064 + (GAA)n Simple_repeat Simple_repeat 2 57 0 3 1714 1277 78 6 0 chr4 148105056 148105235 -7524885 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1714 252 148 0 69 chr4 148105235 148105322 -7524798 + G-rich Low_complexity Low_complexity 2 82 0 3 1714 226 245 38 0 chr4 148105440 148105493 -7524627 + GA-rich Low_complexity Low_complexity 4 58 0 3 1714 356 283 16 126 chr4 148105582 148105618 -7524502 - B4A SINE B4 0 292 259 3 1714 347 41 0 20 chr4 148105618 148105668 -7524452 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1714 660 26 0 0 chr4 148105672 148105750 -7524370 + (GA)n Simple_repeat Simple_repeat 2 79 0 3 1714 356 283 16 126 chr4 148105750 148105785 -7524335 - B4A SINE B4 -34 258 232 3 1714 1133 186 25 0 chr4 148105785 148105989 -7524131 - B3 SINE B2 -4 212 4 3 1714 356 283 16 126 chr4 148105989 148106101 -7524019 - B4A SINE B4 -61 231 124 3 1714 670 280 58 11 chr4 148106184 148106372 -7523748 + B3 SINE B2 15 211 -5 3 1714 202 240 20 0 chr4 148106576 148106626 -7523494 + MIRc SINE MIR 109 159 -109 3 1714 702 189 0 0 chr4 148107616 148107791 -7522329 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1714 243 0 0 0 chr4 148107791 148107818 -7522302 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 1714 513 0 0 0 chr4 148107864 148107921 -7522199 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 3 1714 820 167 199 6 chr4 148107921 148108092 -7522028 - B3 SINE B2 -9 207 2 3 1714 400 279 63 69 chr4 148108110 148108299 -7521821 - B3A SINE B2 0 198 11 3 1714 416 242 159 0 chr4 148110299 148110431 -7519689 - RSINE1 SINE B4 0 165 13 3 1714 545 146 32 0 chr4 148110440 148110563 -7519557 + CT-rich Low_complexity Low_complexity 2 128 0 3 1714 610 162 90 0 chr4 148110565 148110676 -7519444 - B1_Mus1 SINE Alu -6 142 22 3 214 357 326 53 73 chr4 148111321 148111566 -7518554 + MIR SINE MIR 11 250 -18 3 1715 312 265 251 1 chr4 148111931 148112043 -7518077 + RSINE1 SINE B4 2 142 -23 3 1715 250 274 130 17 chr4 148112554 148112682 -7517438 + L2b LINE L2 3032 3176 -211 3 1715 236 306 125 31 chr4 148112701 148112829 -7517291 + L2b LINE L2 3287 3426 0 3 1715 341 284 0 9 chr4 148112829 148112939 -7517181 + (TGAA)n Simple_repeat Simple_repeat 2 110 0 3 1715 189 0 0 0 chr4 148113478 148113499 -7516621 + (TGG)n Simple_repeat Simple_repeat 1 21 0 3 1715 756 246 83 10 chr4 148113499 148113704 -7516416 + ID_B1 SINE B4 2 221 -3 3 1715 642 130 20 0 chr4 148114760 148114860 -7515260 + B1_Mus1 SINE Alu 34 135 -13 3 1715 222 0 79 0 chr4 148115698 148115736 -7514384 + (TGG)n Simple_repeat Simple_repeat 2 42 0 3 1715 1013 132 12 0 chr4 148115736 148115880 -7514240 + B2_Mm2 SINE B2 9 152 -43 3 1715 284 0 0 27 chr4 148115880 148115917 -7514203 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1715 1013 132 12 0 chr4 148115917 148115938 -7514182 + B2_Mm2 SINE B2 153 174 -21 3 1715 1200 146 34 19 chr4 148116139 148116348 -7513772 - B3 SINE B2 0 216 5 3 1715 290 158 51 3 chr4 148116375 148116448 -7513672 - B1F2 SINE Alu -12 108 34 3 1715 234 0 0 0 chr4 148116468 148116494 -7513626 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1715 180 97 0 0 chr4 148117104 148117135 -7512985 + (CGGGGG)n Simple_repeat Simple_repeat 5 35 0 3 1715 363 317 47 52 chr4 148117269 148117482 -7512638 - L2b LINE L2 -53 3322 3111 3 1715 238 370 8 8 chr4 148117864 148117984 -7512136 + C-rich Low_complexity Low_complexity 5 124 0 3 1715 1476 0 0 0 chr4 148118023 148118187 -7511933 + (TCTCC)n Simple_repeat Simple_repeat 3 166 0 3 1715 483 118 0 0 chr4 148118759 148118835 -7511285 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 1715 28 21 0 40 chr4 148119531 148119550 -7510570 + AT_rich Low_complexity Low_complexity 1 18 0 3 1715 554 240 24 67 chr4 148119550 148119715 -7510405 + RSINE1 SINE B4 2 159 -6 3 1715 28 21 0 40 chr4 148119715 148119745 -7510375 + AT_rich Low_complexity Low_complexity 1 30 0 3 1715 408 20 0 0 chr4 148119972 148120021 -7510099 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1715 660 230 7 0 chr4 148121242 148121377 -7508743 + ID_B1 SINE B4 82 217 -7 3 1715 214 178 87 22 chr4 148121337 148121383 -7508737 + PB1D7 SINE Alu 70 118 -2 3 1715 893 203 3 6 chr4 148121780 148122127 -7507993 + (TG)n Simple_repeat Simple_repeat 1 345 0 3 1715 672 214 0 0 chr4 148122576 148122754 -7507366 + CT-rich Low_complexity Low_complexity 2 179 0 3 1715 310 222 35 0 chr4 148124669 148124772 -7505348 + MIRb SINE MIR 31 143 -125 3 1715 236 217 0 0 chr4 148125169 148125215 -7504905 + L2a LINE L2 3381 3426 0 4 1715 219 211 12 62 chr4 148125938 148126019 -7504101 + G-rich Low_complexity Low_complexity 4 80 0 4 1715 1179 117 0 0 chr4 148126051 148126231 -7503889 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1715 328 179 0 25 chr4 148126231 148126255 -7503865 + polypurine Low_complexity Low_complexity 1 24 0 4 1715 1158 122 0 0 chr4 148126255 148126435 -7503685 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1715 328 179 0 25 chr4 148126435 148126490 -7503630 + polypurine Low_complexity Low_complexity 25 78 0 4 1715 459 0 0 0 chr4 148128026 148128077 -7502043 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1715 786 155 0 0 chr4 148128219 148128387 -7501733 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1715 390 236 18 18 chr4 148128746 148128858 -7501262 - HAL1-2a_MD LINE L1 -498 2526 2415 4 1715 327 286 101 25 chr4 148128923 148129081 -7501039 - HAL1-2a_MD LINE L1 -530 2494 2325 4 1715 242 308 0 13 chr4 148129117 148129196 -7500924 + (TGG)n Simple_repeat Simple_repeat 3 80 0 4 1715 1304 99 22 16 chr4 148129367 148129552 -7500568 - B2_Mm2 SINE B2 -9 186 1 4 1715 754 154 0 23 chr4 148129611 148129622 -7500498 - B1_Mus2 SINE Alu -4 143 135 4 1715 222 62 0 0 chr4 148129622 148129654 -7500466 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1715 754 154 0 23 chr4 148129654 148129775 -7500345 - B1_Mus2 SINE Alu -13 134 14 4 1715 230 296 113 0 chr4 148129835 148129906 -7500214 - PB1D10 SINE Alu -16 101 23 4 1715 1143 213 19 14 chr4 148130340 148130554 -7499566 - B3 SINE B2 -1 215 1 4 1715 219 283 0 32 chr4 148130579 148130607 -7499513 + ID4_ SINE ID 4 31 -52 4 1715 711 0 0 0 chr4 148130607 148130686 -7499434 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 1715 219 283 0 32 chr4 148130686 148130719 -7499401 + ID4_ SINE ID 32 63 -20 4 1715 815 256 32 18 chr4 148130769 148130994 -7499126 + B4 SINE B4 1 229 -63 4 1715 488 290 0 138 chr4 148130994 148131182 -7498938 + RSINE1 SINE B4 2 163 -2 4 1715 748 291 49 28 chr4 148131182 148131242 -7498878 + B4A SINE B4 230 292 0 4 1715 441 0 0 0 chr4 148131620 148131669 -7498451 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1715 212 175 0 34 chr4 148131691 148131750 -7498370 + (TATG)n Simple_repeat Simple_repeat 3 59 0 4 1715 210 255 0 0 chr4 148131883 148131934 -7498186 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 4 1715 348 244 0 0 chr4 148131935 148132062 -7498058 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1715 704 128 0 96 chr4 148132093 148132292 -7497828 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1715 488 200 0 0 chr4 148132299 148132384 -7497736 + B3A SINE B2 21 105 -93 4 1715 457 332 20 57 chr4 148132484 148132516 -7497604 + Cheshire DNA MER1_type 70 98 -2322 4 1715 866 165 0 35 chr4 148132516 148132660 -7497460 + B1_Mus1 SINE Alu 5 143 -5 4 1715 457 332 20 57 chr4 148132660 148132873 -7497247 + Cheshire DNA MER1_type 99 305 -2115 4 1715 1152 196 29 91 chr4 148132887 148133162 -7496958 + MTE2b LTR MaLR 3 260 -119 4 1715 1028 192 43 43 chr4 148133167 148133563 -7496557 + RMER17C LTR ERVK 1 278 -132 4 1715 558 43 0 0 chr4 148133563 148133632 -7496488 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1715 234 91 0 0 chr4 148133635 148133668 -7496452 + (CTATA)n Simple_repeat Simple_repeat 3 35 0 4 1715 1028 190 56 22 chr4 148133668 148133795 -7496325 + RMER17C LTR ERVK 279 405 -5 4 1715 360 292 0 19 chr4 148133798 148133906 -7496214 + MTE2b LTR MaLR 265 370 -9 4 1715 279 162 69 81 chr4 148133977 148134064 -7496056 - RLTR25A LTR ERVK -514 589 442 4 1715 737 93 0 0 chr4 148133998 148134105 -7496015 - B1_Mus1 SINE Alu -41 107 1 4 1715 502 183 41 50 chr4 148134107 148134228 -7495892 - ID_B1 SINE B4 -3 221 102 4 1715 561 331 98 19 chr4 148134303 148134687 -7495433 + L1MD3 LINE L1 7038 7668 -327 4 1715 600 154 34 0 chr4 148134687 148134804 -7495316 - MTD LTR MaLR -31 388 268 4 1715 372 171 0 0 chr4 148134829 148134911 -7495209 + CT-rich Low_complexity Low_complexity 1 82 0 4 1715 646 254 7 14 chr4 148134919 148135063 -7495057 - B1_Mur1 SINE Alu -5 144 2 4 1715 918 215 26 10 chr4 148135065 148135258 -7494862 - MTD LTR MaLR -211 208 13 4 1715 901 291 37 15 chr4 148135267 148135592 -7494528 + L1MD3 LINE L1 7664 7995 0 4 1715 442 200 82 0 chr4 148135591 148135726 -7494394 + L1MEc LINE L1 804 949 -5451 4 1715 301 235 29 0 chr4 148135877 148135945 -7494175 + (TATG)n Simple_repeat Simple_repeat 2 71 0 4 1715 594 251 0 0 chr4 148135946 148136188 -7493932 + (TG)n Simple_repeat Simple_repeat 1 242 0 4 1715 1095 269 31 0 chr4 148136211 148136471 -7493649 + B4A SINE B4 2 269 -23 4 1715 209 83 28 0 chr4 148136482 148136518 -7493602 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1715 242 341 12 0 chr4 148136554 148136636 -7493484 + ID4_ SINE ID 1 83 0 4 1715 300 309 64 51 chr4 148136636 148136793 -7493327 + L1MEc LINE L1 1019 1177 -5223 4 1715 337 185 35 58 chr4 148136809 148136895 -7493225 + B4 SINE B4 14 97 -195 4 1715 317 286 25 106 chr4 148136895 148137008 -7493112 + B3A SINE B2 14 196 -2 4 1715 514 309 37 56 chr4 148137034 148137250 -7492870 + B4A SINE B4 81 292 0 4 1715 1187 62 7 0 chr4 148137476 148137621 -7492499 + B1_Mus2 SINE Alu 2 147 0 4 1715 366 156 0 0 chr4 148137641 148137705 -7492415 + GA-rich Low_complexity Low_complexity 2 65 0 4 1715 386 236 33 22 chr4 148137731 148137822 -7492298 + B4A SINE B4 7 98 -194 4 1715 3352 183 234 29 chr4 148137829 148138560 -7491560 + RMER1B Other Other 11 924 -142 4 1715 1257 41 0 0 chr4 148138560 148138707 -7491413 - B1_Mm SINE Alu 0 147 1 4 1715 3352 183 234 29 chr4 148138707 148138835 -7491285 + RMER1B Other Other 925 1046 -20 4 1715 327 49 0 0 chr4 148138835 148138876 -7491244 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1715 703 179 28 56 chr4 148138887 148139029 -7491091 + B1_Mur2 SINE Alu 3 140 -9 4 1715 279 0 0 0 chr4 148139029 148139060 -7491060 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1715 753 265 19 24 chr4 148139063 148139272 -7490848 + B4 SINE B4 81 288 -4 4 1715 294 274 14 0 chr4 148139339 148139412 -7490708 + G-rich Low_complexity Low_complexity 6 79 0 4 1715 860 124 11 27 chr4 148139412 148139595 -7490525 + GA-rich Low_complexity Low_complexity 1 180 0 4 1715 1441 132 14 9 chr4 148139889 148140111 -7490009 + URR1B DNA MER1_type 1 223 -2 4 1715 537 237 9 9 chr4 148140223 148140338 -7489782 - RSINE1 SINE B4 -49 116 2 4 1715 207 0 0 0 chr4 148141171 148141194 -7488926 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1715 390 21 0 0 chr4 148141440 148141487 -7488633 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1715 833 27 0 0 chr4 148141698 148141809 -7488311 - L1Md_T LINE L1 0 6582 6472 4 1715 282 350 28 42 chr4 148143463 148143606 -7486514 - MIR SINE MIR -77 185 45 4 1715 211 202 53 18 chr4 148144009 148144085 -7486035 + MIRm SINE MIR 109 191 -17 4 1715 221 57 0 28 chr4 148146345 148146381 -7483739 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 4 1715 315 275 97 35 chr4 148146426 148146539 -7483581 - RSINE1 SINE B4 0 165 46 4 1715 1115 96 0 0 chr4 148146579 148146725 -7483395 - B1_Mus1 SINE Alu 0 148 3 4 1715 1323 211 111 15 chr4 148146771 148147135 -7482985 - MTD LTR MaLR -7 372 1 4 1715 355 333 16 93 chr4 148147145 148147327 -7482793 - B4A SINE B4 -118 174 7 4 1715 584 226 201 0 chr4 148147328 148147492 -7482628 - ID_B1 SINE B4 -10 214 18 4 1715 213 132 79 0 chr4 148148305 148148343 -7481777 + polypurine Low_complexity Low_complexity 1 41 0 4 1715 234 204 41 0 chr4 148149117 148149166 -7480954 + C-rich Low_complexity Low_complexity 1 51 0 4 1715 441 255 137 0 chr4 148149267 148149444 -7480676 - MIRb SINE MIR 0 262 60 4 1715 213 175 0 0 chr4 148149817 148149857 -7480263 + G-rich Low_complexity Low_complexity 3 42 0 4 1715 205 373 48 24 chr4 148150543 148150708 -7479412 + MIRb SINE MIR 19 187 -81 4 1715 242 296 0 0 chr4 148150910 148150981 -7479139 - ID4 SINE ID -12 71 1 4 1715 495 349 66 47 chr4 148151018 148151292 -7478828 + B4A SINE B4 14 292 0 4 1715 743 168 25 25 chr4 148151297 148151617 -7478503 + (CA)n Simple_repeat Simple_repeat 1 320 0 4 1715 284 295 98 0 chr4 148152739 148152851 -7477269 + MIRc SINE MIR 17 139 -129 4 1715 254 352 0 52 chr4 148153042 148153171 -7476949 + MIRc SINE MIR 17 138 -138 4 1715 512 301 62 11 chr4 148153887 148154065 -7476055 + MIRb SINE MIR 82 268 0 4 1715 576 0 0 0 chr4 148154745 148154809 -7475311 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1715 286 286 181 8 chr4 148155482 148155609 -7474511 + MIR SINE MIR 103 251 -11 4 1715 258 279 41 41 chr4 148156168 148156265 -7473855 + RSINE1 SINE B4 69 165 0 4 1715 224 274 65 0 chr4 148156351 148156413 -7473707 + ID4_ SINE ID 18 83 0 4 1715 375 236 180 39 chr4 148156419 148156547 -7473573 + B1_Mm SINE Alu 1 146 -1 4 1715 261 0 0 0 chr4 148156578 148156607 -7473513 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 4 1715 398 271 104 134 chr4 148156619 148156716 -7473404 + B4 SINE B4 2 88 -204 4 1715 517 292 52 6 chr4 148156716 148156888 -7473232 + B3A SINE B2 1 180 -18 4 1715 398 271 104 134 chr4 148156888 148157088 -7473032 + B4 SINE B4 89 290 -2 4 1715 590 39 13 0 chr4 148157358 148157435 -7472685 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 4 1715 242 387 57 0 chr4 148157442 148157566 -7472554 - L2c LINE L2 -234 3153 3023 4 1715 275 348 34 0 chr4 148157596 148157685 -7472435 + PB1D7 SINE Alu 24 115 -5 4 1715 410 214 10 20 chr4 148157706 148157806 -7472314 + MIRb SINE MIR 80 178 -90 4 1715 485 232 66 94 chr4 148158596 148158777 -7471343 + B4 SINE B4 114 289 -3 4 1715 519 232 0 0 chr4 148158872 148158971 -7471149 - RSINE1 SINE B4 -41 124 26 4 1715 221 323 10 38 chr4 148159060 148159181 -7470939 - MIRb SINE MIR -49 159 45 4 1715 202 297 81 64 chr4 148159916 148160045 -7470075 - MIR SINE MIR -95 167 43 4 1715 396 0 0 0 chr4 148162857 148162901 -7467219 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1715 948 65 0 0 chr4 148162979 148163103 -7467017 + (TCTCCC)n Simple_repeat Simple_repeat 4 127 0 4 1715 586 245 68 7 chr4 148163119 148163267 -7466853 - B4A SINE B4 -134 158 2 4 1715 246 396 9 19 chr4 148163894 148164002 -7466118 - MER81 DNA AcHobo -5 109 3 5 1715 237 272 67 87 chr4 148164030 148164179 -7465941 + B1F1 SINE Alu 4 149 0 5 1715 217 214 0 0 chr4 148164313 148164355 -7465765 - MIRc SINE MIR -113 155 114 5 1715 194 358 47 31 chr4 148165464 148165591 -7464529 - MIRm SINE MIR 0 276 148 5 1715 1822 181 12 180 chr4 148165898 148166048 -7464072 + MTC LTR MaLR 1 112 -309 5 1715 1204 68 0 0 chr4 148166048 148166195 -7463925 - B1_Mus2 SINE Alu 0 147 1 5 1715 1822 181 12 180 chr4 148166195 148166505 -7463615 + MTC LTR MaLR 113 381 -40 5 1715 1126 103 0 0 chr4 148166505 148166651 -7463469 - B1_Mus2 SINE Alu 0 147 2 5 1715 1822 181 12 180 chr4 148166651 148166695 -7463425 + MTC LTR MaLR 382 421 0 5 1715 220 385 60 0 chr4 148167859 148168025 -7462095 + MIRc SINE MIR 89 264 -4 5 1715 415 294 79 44 chr4 148168533 148168736 -7461384 - MIR SINE MIR -14 254 40 5 1715 443 322 0 6 chr4 148169926 148170104 -7460016 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 5 1715 477 0 0 0 chr4 148170973 148171026 -7459094 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1715 247 322 136 27 chr4 148171150 148171297 -7458823 - MIRb SINE MIR -79 189 27 5 1715 234 156 0 0 chr4 148171317 148171362 -7458758 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1715 319 138 0 33 chr4 148171535 148171595 -7458525 - ID_B1 SINE B4 -2 222 165 5 1715 290 159 56 28 chr4 148171595 148171606 -7458514 - B1F SINE Alu -1 148 76 5 1715 262 293 13 51 chr4 148172361 148172440 -7457680 + PB1 SINE Alu 2 77 -50 5 1715 248 288 0 0 chr4 148172463 148172522 -7457598 + tRNA-Ala-GCY_ tRNA tRNA 2 60 -15 5 1715 244 133 0 107 chr4 148172947 148173031 -7457089 + A-rich Low_complexity Low_complexity 2 76 0 5 1715 386 261 92 84 chr4 148173797 148174048 -7456072 + L1ME4a LINE L1 5684 5936 -188 5 1715 421 219 158 0 chr4 148174164 148174278 -7455842 + ID_B1 SINE B4 67 198 -26 5 1715 406 259 52 0 chr4 148174832 148174948 -7455172 + B1F1 SINE Alu 1 122 -27 5 1715 215 323 77 46 chr4 148175104 148175234 -7454886 + MIR SINE MIR 126 259 -3 5 1715 254 302 80 80 chr4 148175751 148175927 -7454193 - L2a LINE L2 -25 3401 3226 5 1715 26 0 0 0 chr4 148175985 148176011 -7454109 + AT_rich Low_complexity Low_complexity 1 26 0 5 1715 465 339 34 0 chr4 148176552 148176729 -7453391 - MIR SINE MIR -11 251 69 5 1715 189 0 0 0 chr4 148177619 148177640 -7452480 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1715 236 178 0 0 chr4 148178755 148178800 -7451320 + (CGAG)n Simple_repeat Simple_repeat 2 46 0 5 1715 28 0 0 0 chr4 148178855 148178883 -7451237 + GC_rich Low_complexity Low_complexity 1 28 0 5 1715 28 48 0 0 chr4 148180214 148180256 -7449864 + GC_rich Low_complexity Low_complexity 1 42 0 5 1715 648 0 0 0 chr4 148180928 148181000 -7449120 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1715 333 0 0 0 chr4 148182338 148182375 -7447745 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1715 356 0 23 0 chr4 148183240 148183284 -7446836 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1715 201 74 0 0 chr4 148183292 148183319 -7446801 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1715 203 146 24 0 chr4 148185515 148185556 -7444564 + GA-rich Low_complexity Low_complexity 2 43 0 5 1715 180 0 0 0 chr4 148185999 148186019 -7444101 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 5 1715 201 39 0 0 chr4 148186525 148186551 -7443569 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1715 661 126 22 39 chr4 148187267 148187449 -7442671 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1715 297 271 15 52 chr4 148187837 148187953 -7442167 + MIRb SINE MIR 56 170 -98 5 1715 195 186 0 0 chr4 148189252 148189295 -7440825 + GA-rich Low_complexity Low_complexity 4 46 0 5 1715 586 184 0 32 chr4 148189542 148189727 -7440393 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1715 549 287 22 0 chr4 148190065 148190201 -7439919 + RSINE1 SINE B4 3 141 -24 5 1715 239 234 0 59 chr4 148190517 148190585 -7439535 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 5 1715 200 311 45 54 chr4 148191879 148191991 -7438129 + MIRc SINE MIR 30 140 -128 5 1715 206 289 0 0 chr4 148192831 148192876 -7437244 - L2b LINE L2 -12 3363 3319 5 1715 602 140 0 73 chr4 148193007 148193130 -7436990 - PB1D10 SINE Alu -1 116 3 5 1715 828 298 60 26 chr4 148195067 148195336 -7434784 + B4A SINE B4 2 279 -13 5 1715 396 0 0 0 chr4 148195367 148195411 -7434709 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1715 1034 224 4 57 chr4 148195520 148195557 -7434563 - B3 SINE B2 0 216 189 5 1715 195 69 0 0 chr4 148195557 148195586 -7434534 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1715 1232 49 0 0 chr4 148195586 148195730 -7434390 - B1_Mus2 SINE Alu -3 144 1 5 1715 1034 224 4 57 chr4 148195730 148195918 -7434202 - B3 SINE B2 -28 188 3 5 1715 238 216 30 40 chr4 148196208 148196309 -7433811 + (TGAG)n Simple_repeat Simple_repeat 4 103 0 5 1715 228 326 0 7 chr4 148196261 148196406 -7433714 + (TG)n Simple_repeat Simple_repeat 2 145 0 5 1715 261 0 0 0 chr4 148198954 148198983 -7431137 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1715 192 77 0 0 chr4 148200698 148200724 -7429396 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 5 1715 279 237 0 0 chr4 148201426 148201561 -7428559 + C-rich Low_complexity Low_complexity 1 135 0 5 1715 21 0 0 0 chr4 148203069 148203090 -7427030 + AT_rich Low_complexity Low_complexity 1 21 0 5 1715 794 168 236 6 chr4 148203091 148203265 -7426855 - B3 SINE B2 -1 215 2 5 1715 782 119 15 31 chr4 148203316 148203446 -7426674 + B1_Mus2 SINE Alu 11 138 -9 5 1715 348 24 0 0 chr4 148203446 148203487 -7426633 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1715 1017 191 0 108 chr4 148203493 148203734 -7426386 + B3 SINE B2 1 215 -1 5 1715 29 47 0 0 chr4 148203780 148203823 -7426297 + AT_rich Low_complexity Low_complexity 1 43 0 5 1715 428 328 45 22 chr4 148203878 148204056 -7426064 + MIRb SINE MIR 86 267 -1 5 1715 713 219 0 64 chr4 148204154 148204325 -7425795 - MER3 DNA MER1_type 0 209 50 5 1715 194 57 57 0 chr4 148204441 148204476 -7425644 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1715 213 121 0 0 chr4 148204581 148204614 -7425506 + (TCCCC)n Simple_repeat Simple_repeat 4 36 0 5 1715 301 262 62 53 chr4 148204954 148205067 -7425053 - HAL1-3A_ME LINE L1 -769 2089 1976 5 1715 858 42 8 0 chr4 148205129 148205248 -7424872 - B1_Mm SINE Alu -1 146 27 5 1715 516 265 36 209 chr4 148205246 148205523 -7424597 - B4 SINE B4 -63 229 1 5 1715 221 180 20 0 chr4 148206090 148206140 -7423980 + CT-rich Low_complexity Low_complexity 2 52 0 5 1715 1135 62 0 40 chr4 148206145 148206295 -7423825 - B1_Mus1 SINE Alu -4 144 1 5 1715 595 310 19 34 chr4 148207046 148207253 -7422867 - MIR SINE MIR -57 205 2 5 1715 456 77 0 0 chr4 148207286 148207351 -7422769 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1715 198 103 0 0 chr4 148208330 148208359 -7421761 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 5 1715 348 316 50 25 chr4 148208849 148209008 -7421112 + MIRb SINE MIR 67 229 -39 5 1715 182 83 0 0 chr4 148209100 148209124 -7420996 + L2b LINE L2 3329 3352 -23 5 1715 202 385 64 9 chr4 148209342 148209452 -7420668 - MIRm SINE MIR -3 273 158 5 1715 373 343 0 0 chr4 148209386 148209488 -7420632 - L2c LINE L2 -38 3349 3248 5 1715 234 91 0 0 chr4 148212150 148212183 -7417937 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1715 692 273 7 7 chr4 148212186 148212337 -7417783 - RSINE1 SINE B4 -12 153 3 5 1715 243 343 117 55 chr4 148212649 148212794 -7417326 + MIR3 SINE MIR 27 180 -28 5 1715 279 0 0 0 chr4 148213475 148213506 -7416614 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1715 864 96 88 0 chr4 148213516 148213652 -7416468 - B1_Mur4 SINE Alu 0 150 3 5 1715 376 216 75 197 chr4 148213652 148213731 -7416389 - B4 SINE B4 -203 89 37 5 1715 21 36 0 0 chr4 148214054 148214082 -7416038 + AT_rich Low_complexity Low_complexity 1 28 0 5 1715 1123 185 48 14 chr4 148214082 148214290 -7415830 - B3 SINE B2 0 216 2 5 1715 180 0 0 0 chr4 148215011 148215031 -7415089 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1715 450 0 0 0 chr4 148215031 148215081 -7415039 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 5 1715 184 360 70 45 chr4 148215292 148215647 -7414473 - L2 LINE L2 -495 2924 2561 5 1715 475 143 0 35 chr4 148217363 148217450 -7412670 - PB1D9 SINE Alu -36 84 1 5 1715 531 205 62 0 chr4 148217453 148217565 -7412555 - PB1D9 SINE Alu 0 120 2 5 1715 267 341 67 58 chr4 148218600 148218840 -7411280 - L2a LINE L2 -216 3210 2969 5 1715 609 287 6 0 chr4 148219540 148219721 -7410399 + MER53 DNA hAT 6 187 -6 5 1715 862 248 40 0 chr4 148221429 148221631 -7408489 + ID_B1 SINE B4 14 223 -1 5 1715 845 76 0 0 chr4 148222476 148222595 -7407525 - B1_Mur3 SINE Alu 0 149 31 5 1715 324 175 12 70 chr4 148223979 148224065 -7406055 - HAL1-3A_ME LINE L1 -802 2056 1976 5 1715 192 163 0 0 chr4 148224065 148224108 -7406012 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1715 303 100 60 0 chr4 148224119 148224169 -7405951 - HAL1-3A_ME LINE L1 -830 2028 1976 5 1715 211 353 41 16 chr4 148224251 148224372 -7405748 + MIRm SINE MIR 22 145 -131 5 1715 576 0 0 0 chr4 148225310 148225374 -7404746 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1715 333 0 0 0 chr4 148225374 148225410 -7404710 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1715 23 0 0 0 chr4 148227431 148227454 -7402666 + AT_rich Low_complexity Low_complexity 1 23 0 6 1715 481 243 4 23 chr4 148228060 148228324 -7401796 + CT-rich Low_complexity Low_complexity 1 258 0 6 1715 291 54 0 0 chr4 148228613 148228650 -7401470 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 6 1715 668 147 62 2 chr4 148228650 148228773 -7401347 - B1_Mur3 SINE Alu -11 137 1 6 1715 324 215 38 123 chr4 148228678 148228784 -7401336 - MT2B LTR ERVL -344 257 161 6 1715 1090 101 14 0 chr4 148229466 148229614 -7400506 + B1_Mur4 SINE Alu 1 150 0 6 1715 246 273 25 91 chr4 148230099 148230220 -7399900 + RMER4B LTR ERVK 442 554 -31 6 1715 699 75 0 0 chr4 148230220 148230314 -7399806 + (GAAA)n Simple_repeat Simple_repeat 4 97 0 6 1715 357 82 0 0 chr4 148230430 148230479 -7399641 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1715 180 0 0 0 chr4 148230660 148230680 -7399440 + (TCTCCC)n Simple_repeat Simple_repeat 4 23 0 6 1715 232 316 0 73 chr4 148231351 148231433 -7398687 + MIRm SINE MIR 197 272 -4 6 1715 254 213 33 0 chr4 148232698 148232759 -7397361 + MIRm SINE MIR 97 159 -117 6 1715 1067 107 0 13 chr4 148232769 148232921 -7397199 + B1_Mur4 SINE Alu 1 150 0 6 1715 209 109 21 42 chr4 148232924 148232972 -7397148 + A-rich Low_complexity Low_complexity 2 48 0 6 1715 255 125 0 0 chr4 148234778 148234818 -7395302 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1715 182 330 49 82 chr4 148235518 148235640 -7394480 - MIR SINE MIR -10 252 135 6 1715 247 227 79 13 chr4 148235735 148235811 -7394309 + L2c LINE L2 3109 3189 -198 6 1715 582 167 0 0 chr4 148236182 148236290 -7393830 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 1715 537 16 0 0 chr4 148236310 148236372 -7393748 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 6 1715 228 67 0 0 chr4 148236372 148236402 -7393718 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1715 213 39 0 0 chr4 148236678 148236704 -7393416 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 6 1715 492 219 262 0 chr4 148236987 148237147 -7392973 + ID_B1 SINE B4 4 205 -19 6 1715 466 289 24 48 chr4 148237164 148237331 -7392789 + RSINE1 SINE B4 3 165 0 6 1715 318 181 14 14 chr4 148237360 148237433 -7392687 - ID_B1 SINE B4 -10 214 142 6 1715 491 226 19 0 chr4 148237393 148237499 -7392621 - B1_Mur1 SINE Alu -18 131 24 6 1715 212 259 24 0 chr4 148237550 148237635 -7392485 + GA-rich Low_complexity Low_complexity 4 90 0 6 1715 591 15 0 0 chr4 148237981 148238049 -7392071 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1715 1169 88 0 0 chr4 148238090 148238238 -7391882 - B1_Mus1 SINE Alu 0 148 1 6 1715 361 279 70 0 chr4 148238257 148238343 -7391777 - PB1D10 SINE Alu -21 96 5 6 1715 317 278 62 127 chr4 148238341 148238490 -7391630 - Charlie1 DNA MER1_type -31 2750 2600 6 1715 474 206 102 9 chr4 148238490 148238598 -7391522 + PB1D9 SINE Alu 2 119 -1 6 1715 317 278 62 127 chr4 148238598 148238708 -7391412 - Charlie1 DNA MER1_type -182 2599 2508 6 1715 182 250 9 28 chr4 148238708 148238815 -7391305 + (TG)n Simple_repeat Simple_repeat 2 106 0 6 1715 295 240 171 9 chr4 148238925 148239030 -7391090 - B4A SINE B4 -170 122 1 6 1715 357 209 24 23 chr4 148239132 148239232 -7390888 + PB1D9 SINE Alu 34 135 -13 6 1715 483 18 0 0 chr4 148239232 148239288 -7390832 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1715 235 289 23 57 chr4 148239344 148239432 -7390688 - Charlie1 DNA MER1_type -492 2289 2205 6 1715 944 258 133 53 chr4 148239447 148239823 -7390297 - Charlie1 DNA MER1_type -548 2233 1828 6 1715 741 227 133 5 chr4 148239966 148240161 -7389959 + ID_B1 SINE B4 2 221 -3 6 1715 217 0 61 0 chr4 148240439 148240472 -7389648 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1715 188 184 20 0 chr4 148240838 148240887 -7389233 + C-rich Low_complexity Low_complexity 3 52 0 6 1715 681 176 11 22 chr4 148240890 148241070 -7389050 + CT-rich Low_complexity Low_complexity 3 180 0 6 1715 201 282 0 71 chr4 148241070 148241154 -7388966 + C-rich Low_complexity Low_complexity 2 79 0 6 1715 455 0 18 0 chr4 148241597 148241652 -7388468 + (TAA)n Simple_repeat Simple_repeat 2 57 0 6 1716 1574 31 0 58 chr4 148242838 148243043 -7387077 - B2_Mm1t SINE B2 0 193 1 6 1716 560 91 11 0 chr4 148244350 148244438 -7385682 + (TG)n Simple_repeat Simple_repeat 1 89 0 6 1716 387 108 31 31 chr4 148244519 148244615 -7385505 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1716 1295 174 5 0 chr4 148244620 148244827 -7385293 - B3 SINE B2 -8 208 1 6 1716 945 251 31 9 chr4 148244827 148245052 -7385068 - B4A SINE B4 -62 230 1 6 1716 26 0 0 0 chr4 148245067 148245093 -7385027 + AT_rich Low_complexity Low_complexity 1 26 0 6 1716 364 280 17 70 chr4 148245095 148245210 -7384910 - PB1 SINE Alu -2 125 17 6 1716 24 0 0 0 chr4 148245493 148245517 -7384603 + GC_rich Low_complexity Low_complexity 1 24 0 6 1716 522 266 49 28 chr4 148248986 148249129 -7380991 - B1F1 SINE Alu -1 148 3 6 1716 1260 28 0 0 chr4 148249692 148249834 -7380286 + B1_Mus1 SINE Alu 1 142 -6 6 1716 180 0 0 0 chr4 148249835 148249855 -7380265 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 6 1716 867 140 0 0 chr4 148249855 148249998 -7380122 + (GGGA)n Simple_repeat Simple_repeat 1 143 0 6 1716 351 322 84 19 chr4 148251506 148251661 -7378459 - MIRb SINE MIR -9 259 95 6 1716 525 104 0 0 chr4 148252023 148252100 -7378020 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1716 24 0 0 0 chr4 148252610 148252634 -7377486 + AT_rich Low_complexity Low_complexity 1 24 0 6 1716 596 165 0 9 chr4 148254049 148254165 -7375955 + CT-rich Low_complexity Low_complexity 1 115 0 6 1716 766 133 21 56 chr4 148254165 148254308 -7375812 - B1_Mur4 SINE Alu -8 142 5 6 1716 405 145 61 114 chr4 148254201 148254333 -7375787 - MT2B LTR ERVL -337 264 140 6 1716 228 86 0 0 chr4 148256377 148256412 -7373708 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 1716 666 271 88 0 chr4 148257051 148257243 -7372877 - ID_B1 SINE B4 -1 223 15 6 1716 416 204 88 0 chr4 148257424 148257537 -7372583 - L1MB4 LINE L1 -2 6178 6056 6 1716 566 40 26 0 chr4 148257537 148257613 -7372507 + (TATG)n Simple_repeat Simple_repeat 2 79 0 6 1716 874 153 0 0 chr4 148257613 148257757 -7372363 - B1_Mur4 SINE Alu -1 149 6 6 1716 938 278 126 23 chr4 148257765 148258163 -7371957 - L1MB5 LINE L1 -109 6065 5627 6 1716 1258 34 0 7 chr4 148258972 148259119 -7371001 + B1_Mm SINE Alu 2 147 0 6 1716 645 202 273 23 chr4 148259231 148259403 -7370717 + B3 SINE B2 1 215 -1 6 1716 287 227 34 11 chr4 148261358 148261447 -7368673 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 6 1716 1032 142 0 0 chr4 148261460 148261608 -7368512 + B1_Mur4 SINE Alu 2 149 -1 6 1716 540 56 0 0 chr4 148261608 148261680 -7368440 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1716 853 111 7 43 chr4 148261882 148262023 -7368097 - B1_Mur3 SINE Alu -13 136 1 6 1716 233 303 0 13 chr4 148263354 148263431 -7366689 - MamGypLTR2c LTR Gypsy -698 370 295 6 1716 432 0 0 0 chr4 148264061 148264109 -7366011 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1716 812 252 13 83 chr4 148265972 148266151 -7363969 + MER58A DNA MER1_type 9 181 -43 6 1716 1115 51 0 21 chr4 148266151 148266291 -7363829 + B1_Mus1 SINE Alu 2 138 -10 6 1716 330 26 0 0 chr4 148266291 148266330 -7363790 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1716 812 252 13 83 chr4 148266330 148266378 -7363742 + MER58A DNA MER1_type 182 220 -4 6 1716 432 0 0 0 chr4 148266712 148266760 -7363360 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1716 572 238 26 122 chr4 148269176 148269406 -7360714 - L1MB7 LINE L1 -9 6175 5968 6 1716 282 306 26 77 chr4 148269411 148269528 -7360592 - MIRb SINE MIR -130 138 28 6 1716 207 69 0 0 chr4 148272307 148272336 -7357784 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 6 1716 243 0 0 0 chr4 148273673 148273700 -7356420 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1716 32 0 0 0 chr4 148274823 148274855 -7355265 + GC_rich Low_complexity Low_complexity 1 32 0 6 1716 22 35 0 0 chr4 148275435 148275464 -7354656 + GC_rich Low_complexity Low_complexity 1 29 0 6 1716 201 39 0 0 chr4 148275664 148275690 -7354430 + (CCCGG)n Simple_repeat Simple_repeat 5 30 0 6 1716 265 24 48 0 chr4 148276212 148276254 -7353866 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1716 272 137 20 0 chr4 148278566 148278617 -7351503 + GA-rich Low_complexity Low_complexity 2 53 0 6 1716 234 299 220 28 chr4 148279641 148279782 -7350338 + L3 LINE CR1 4312 4479 -10 6 1716 225 189 18 36 chr4 148280453 148280508 -7349612 + CT-rich Low_complexity Low_complexity 6 59 0 6 1716 233 57 29 0 chr4 148283613 148283648 -7346472 + (TTC)n Simple_repeat Simple_repeat 2 37 0 6 1716 234 272 24 47 chr4 148285180 148285265 -7344855 + ID4 SINE ID 1 83 0 6 1716 585 40 0 0 chr4 148285822 148285898 -7344222 + (GGA)n Simple_repeat Simple_repeat 2 77 0 6 1716 225 266 56 103 chr4 148291125 148291251 -7338869 + LTR86A2 LTR ERVL 63 182 -326 6 1716 462 18 0 0 chr4 148294513 148294568 -7335552 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1716 201 94 0 0 chr4 148295100 148295132 -7334988 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1716 261 0 0 0 chr4 148295135 148295164 -7334956 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 1716 200 204 20 0 chr4 148296181 148296230 -7333890 + (CGGG)n Simple_repeat Simple_repeat 1 50 0 6 1716 354 23 0 0 chr4 148297311 148297354 -7332766 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1716 214 333 48 0 chr4 148301660 148301744 -7328376 + L2b LINE L2 3270 3357 -18 6 1716 870 177 0 0 chr4 148301879 148302218 -7327902 + (TG)n Simple_repeat Simple_repeat 1 339 0 6 1716 180 0 0 0 chr4 148303720 148303740 -7326380 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 6 1716 251 294 0 23 chr4 148305894 148305981 -7324139 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 1716 21 57 0 0 chr4 148306665 148306700 -7323420 + AT_rich Low_complexity Low_complexity 1 35 0 7 1716 224 272 0 52 chr4 148313873 148313970 -7316150 + CT-rich Low_complexity Low_complexity 4 95 0 7 1716 22 56 0 0 chr4 148316134 148316170 -7313950 + AT_rich Low_complexity Low_complexity 1 36 0 7 1716 212 0 0 35 chr4 148317450 148317479 -7312641 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 7 1716 198 0 0 0 chr4 148323524 148323546 -7306574 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 1716 231 36 0 0 chr4 148323589 148323617 -7306503 + (TCC)n Simple_repeat Simple_repeat 3 30 0 7 1716 404 242 37 82 chr4 148325123 148325258 -7304862 + AmnSINE1 SINE SINE 285 413 -162 7 1716 231 203 0 0 chr4 148326375 148326434 -7303686 + (CCA)n Simple_repeat Simple_repeat 2 60 0 7 1716 339 171 0 0 chr4 148326490 148326566 -7303554 + (CGA)n Simple_repeat Simple_repeat 1 76 0 7 1716 23 33 0 0 chr4 148326838 148326868 -7303252 + GC_rich Low_complexity Low_complexity 1 30 0 7 1716 252 120 0 0 chr4 148327422 148327472 -7302648 + (A)n Simple_repeat Simple_repeat 1 50 0 7 1716 267 140 0 0 chr4 148328150 148328200 -7301920 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1716 219 88 0 0 chr4 148328414 148328448 -7301672 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1716 347 202 10 0 chr4 148328663 148328762 -7301358 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 1716 797 273 90 36 chr4 148331530 148331807 -7298313 + B4 SINE B4 1 292 0 7 1716 927 32 194 0 chr4 148332039 148332163 -7297957 - B1_Mus1 SINE Alu 0 148 1 7 1716 189 328 39 63 chr4 148332487 148332614 -7297506 - L3 LINE CR1 -4359 130 7 7 1716 182 194 0 16 chr4 148335591 148335654 -7294466 + CT-rich Low_complexity Low_complexity 2 63 0 7 1716 200 286 118 59 chr4 148339761 148339880 -7290240 - MIRb SINE MIR -98 170 45 7 1716 206 83 56 0 chr4 148343560 148343596 -7286524 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1716 1117 276 78 26 chr4 148345476 148345863 -7284257 + Tigger7 DNA MER2_type 56 462 -2029 7 1716 241 261 46 0 chr4 148345914 148345979 -7284141 + Tigger7 DNA MER2_type 2326 2393 -98 7 1716 489 205 110 8 chr4 148347646 148347764 -7282356 - RSINE1 SINE B4 -32 133 4 7 1716 706 225 62 2 chr4 148347782 148347933 -7282187 + B3 SINE B2 1 156 -60 7 1716 553 76 0 21 chr4 148347933 148348027 -7282093 + (CA)n Simple_repeat Simple_repeat 2 93 0 7 1716 532 240 81 76 chr4 148348027 148348060 -7282060 + B2_Mm2 SINE B2 152 185 -10 7 1716 269 224 43 86 chr4 148348054 148348147 -7281973 + MT2B2 LTR ERVL 153 241 -343 7 1716 421 246 181 87 chr4 148348075 148348213 -7281907 + PB1D10 SINE Alu 11 113 -36 7 1716 684 151 19 0 chr4 148348371 148348477 -7281643 + B1_Mur3 SINE Alu 33 140 -9 7 1716 230 308 97 21 chr4 148349682 148349775 -7280345 + BC1_Mm scRNA scRNA 2 101 -51 7 1716 390 260 72 10 chr4 148349775 148349872 -7280248 + PB1D7 SINE Alu 1 103 -17 7 1716 25 31 0 0 chr4 148349880 148349912 -7280208 + AT_rich Low_complexity Low_complexity 1 32 0 7 1716 255 61 0 0 chr4 148349937 148349970 -7280150 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1716 329 339 115 0 chr4 148350223 148350415 -7279705 + L1M4 LINE L1 5174 5387 -759 7 1716 1211 187 5 23 chr4 148350422 148350641 -7279479 + B3 SINE B2 2 216 0 7 1716 323 262 95 32 chr4 148350651 148350777 -7279343 + L1M4 LINE L1 5381 5514 -665 7 1716 246 286 42 14 chr4 148350812 148350883 -7279237 + RSINE1 SINE B4 2 74 -91 7 1716 556 296 117 26 chr4 148351431 148351781 -7278339 + L1MB7 LINE L1 5785 6166 -18 7 1716 463 263 51 0 chr4 148351797 148351915 -7278205 + RSINE1 SINE B4 2 125 -40 7 1716 366 107 0 0 chr4 148351917 148351973 -7278147 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1716 523 41 0 26 chr4 148352155 148352231 -7277889 + (AGGGGG)n Simple_repeat Simple_repeat 2 75 0 7 1716 256 277 161 0 chr4 148352378 148352490 -7277630 + L1ME2 LINE L1 5262 5391 -773 7 1716 1562 285 58 17 chr4 148352596 148353198 -7276922 + L1ME2 LINE L1 5534 6160 -4 7 1716 233 293 27 0 chr4 148354577 148354652 -7275468 + L2b LINE L2 3278 3354 -21 7 1716 405 0 0 0 chr4 148356867 148356912 -7273208 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1716 1660 27 0 0 chr4 148357145 148357332 -7272788 - B2_Mm1a SINE B2 -5 188 2 7 1716 208 237 0 0 chr4 148362179 148362217 -7267903 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 7 1716 522 257 144 21 chr4 148364781 148364968 -7265152 - B3 SINE B2 -6 210 1 7 1716 647 262 48 34 chr4 148364990 148365199 -7264921 - B3 SINE B2 -4 212 1 7 1716 283 270 220 0 chr4 148365370 148365385 -7264735 + B4 SINE B4 69 105 -187 7 1716 359 198 187 9 chr4 148365385 148365492 -7264628 + B1_Mur2 SINE Alu 1 126 -23 7 1716 424 280 82 5 chr4 148365664 148365872 -7264248 + L1MA6 LINE L1 6023 6246 -54 7 1716 1376 47 0 6 chr4 148365880 148366050 -7264070 + B2_Mm2 SINE B2 1 169 -26 7 1716 1147 50 0 0 chr4 148366047 148366187 -7263933 + B1_Mus1 SINE Alu 9 148 0 7 1716 307 330 0 31 chr4 148366188 148366285 -7263835 + L1MEg LINE L1 1882 1975 -4109 7 1716 590 254 0 78 chr4 148366320 148366474 -7263646 + B1F SINE Alu 1 142 -7 7 1716 225 311 13 26 chr4 148366518 148366594 -7263526 + tRNA-Ala-GCA tRNA tRNA 1 75 0 7 1716 868 233 6 22 chr4 148366527 148366687 -7263433 + B3A SINE B2 16 174 -24 7 1716 180 0 0 0 chr4 148366687 148366707 -7263413 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1716 868 233 6 22 chr4 148366707 148366726 -7263394 + B3A SINE B2 175 192 -6 7 1716 1396 46 103 0 chr4 148366828 148366987 -7263133 + B2_Mm2 SINE B2 1 177 -18 7 1716 180 0 0 0 chr4 148366987 148367007 -7263113 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1716 1396 46 103 0 chr4 148367007 148367022 -7263098 + B2_Mm2 SINE B2 178 192 -3 7 1716 654 209 70 21 chr4 148367243 148367385 -7262735 - B1_Mur1 SINE Alu 0 149 1 7 1716 216 0 0 0 chr4 148367592 148367616 -7262504 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1716 234 309 0 58 chr4 148368311 148368397 -7261723 + L1M5 LINE L1 5566 5646 -478 7 1716 263 215 19 248 chr4 148368446 148368551 -7261569 - ID4_ SINE ID -2 81 1 7 1716 381 325 36 30 chr4 148368551 148368696 -7261424 + ID_B1 SINE B4 76 221 -3 7 1716 467 224 29 44 chr4 148369478 148369671 -7260449 + B3A SINE B2 1 188 -7 7 1716 471 244 151 0 chr4 148370243 148370362 -7259758 + B1F SINE Alu 4 140 -9 7 1716 1253 55 0 0 chr4 148370400 148370546 -7259574 + B1_Mus2 SINE Alu 2 147 0 7 1716 219 36 0 0 chr4 148370556 148370584 -7259536 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1716 868 137 0 35 chr4 148370601 148370745 -7259375 + B1_Mur4 SINE Alu 12 150 0 7 1716 335 245 158 11 chr4 148370847 148370942 -7259178 - RSINE1 SINE B4 -33 132 24 7 1716 26 74 0 0 chr4 148370989 148371043 -7259077 + AT_rich Low_complexity Low_complexity 1 54 0 7 1716 595 139 3 0 chr4 148371354 148371461 -7258659 - B1_Mus1 SINE Alu -2 118 10 7 1716 364 220 37 83 chr4 148371374 148371483 -7258637 - MT2B LTR ERVL -350 251 148 7 1716 334 295 94 25 chr4 148371635 148371795 -7258325 + L2a LINE L2 2996 3166 -260 7 1716 241 292 97 0 chr4 148371997 148372069 -7258051 + ID4 SINE ID 2 80 -3 7 1716 422 167 12 0 chr4 148372070 148372154 -7257966 + (CATA)n Simple_repeat Simple_repeat 3 87 0 7 1716 518 267 9 0 chr4 148372268 148372373 -7257747 + RSINE1 SINE B4 25 130 -35 7 1716 236 294 23 23 chr4 148372565 148372694 -7257426 - L1MEg LINE L1 -5122 962 834 7 1716 421 309 58 32 chr4 148373148 148373302 -7256818 - RSINE1 SINE B4 -6 159 2 7 1717 289 218 109 0 chr4 148374319 148374420 -7255700 + Lx3_Mus LINE L1 6880 6991 -18 7 1717 304 257 128 10 chr4 148374754 148374856 -7255264 + L1M5 LINE L1 5185 5298 -848 7 1717 480 220 70 0 chr4 148374879 148374979 -7255141 + RSINE1 SINE B4 17 123 -42 7 1717 716 226 87 54 chr4 148374979 148375231 -7254889 + MTD LTR MaLR 42 382 -37 7 1717 903 210 73 29 chr4 148375231 148375437 -7254683 - B3 SINE B2 0 216 2 7 1717 399 224 47 94 chr4 148375437 148375480 -7254640 + MTD LTR MaLR 383 419 0 7 1717 578 234 7 54 chr4 148375546 148375695 -7254425 + ID_B1 SINE B4 83 224 0 7 1717 234 82 82 0 chr4 148375653 148375702 -7254418 + FAM SINE Alu 262 314 -1 7 1717 764 246 43 24 chr4 148376451 148376659 -7253461 - B3A SINE B2 -1 215 1 7 1717 218 228 0 34 chr4 148376936 148376995 -7253125 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1717 605 86 271 19 chr4 148377077 148377184 -7252936 - B1_Mus1 SINE Alu 0 148 15 7 1717 326 225 86 12 chr4 148377115 148377196 -7252924 - B4A SINE B4 -123 169 83 7 1717 686 186 8 31 chr4 148377213 148377341 -7252779 + B1_Mur1 SINE Alu 25 149 0 7 1717 666 306 40 0 chr4 148377533 148377706 -7252414 + B3 SINE B2 37 216 0 7 1717 1782 198 108 0 chr4 148377733 148378102 -7252018 + MTD LTR MaLR 11 419 0 7 1717 348 271 58 25 chr4 148378210 148378331 -7251789 - RSINE1 SINE B4 -2 163 39 7 1717 351 113 0 0 chr4 148378417 148378470 -7251650 + (CACCAT)n Simple_repeat Simple_repeat 1 53 0 7 1717 305 330 0 0 chr4 148378525 148378616 -7251504 - ID_B1 SINE B4 -132 92 2 7 1717 371 296 156 7 chr4 148378658 148378994 -7251126 - L1ME3 LINE L1 -610 5834 5450 7 1717 1219 125 10 10 chr4 148379077 148379271 -7250849 - B2_Mm2 SINE B2 0 195 2 7 1717 364 330 179 23 chr4 148379271 148379668 -7250452 - L1ME3 LINE L1 -749 5397 4939 7 1717 412 224 216 0 chr4 148379864 148379980 -7250140 - ID_B1 SINE B4 0 224 84 7 1717 1244 84 62 0 chr4 148380046 148380225 -7249895 + B2_Mm2 SINE B2 2 191 -4 7 1717 2148 133 52 60 chr4 148380306 148380691 -7249429 + ORR1C2 LTR MaLR 3 384 0 7 1717 809 144 18 126 chr4 148380717 148380884 -7249236 + B1_Mur2 SINE Alu 1 149 0 8 1717 909 319 134 83 chr4 148380932 148381507 -7248613 + HAL1 LINE L1 982 1557 -950 8 1717 1193 55 14 0 chr4 148381507 148381652 -7248468 - B1_Mus1 SINE Alu 0 148 2 8 1717 909 319 134 83 chr4 148381652 148381934 -7248186 + HAL1 LINE L1 1558 1883 -624 8 1717 504 0 0 0 chr4 148382241 148382297 -7247823 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1717 232 304 38 0 chr4 148382303 148382382 -7247738 - Charlie13a DNA Charlie -1061 453 372 8 1717 388 285 78 0 chr4 148382432 148382640 -7247480 + L1M2 LINE L1 3764 3997 -2149 8 1717 8103 125 39 16 chr4 148383023 148384271 -7245849 + Lx4B LINE L1 5782 7058 0 8 1717 349 291 15 66 chr4 148384282 148384418 -7245702 + L1M2 LINE L1 4531 4659 -1487 8 1717 992 125 0 7 chr4 148384471 148384616 -7245504 + B2_Mm2 SINE B2 1 144 -51 8 1717 940 29 22 14 chr4 148384627 148384765 -7245355 + (GGGAGA)n Simple_repeat Simple_repeat 2 140 0 8 1717 348 149 358 18 chr4 148384934 148385043 -7245077 - B1_Mur1 SINE Alu -2 147 2 8 1717 248 277 116 11 chr4 148385069 148385164 -7244956 + MER58B DNA MER1_type 67 171 -170 8 1717 343 355 82 8 chr4 148385432 148385554 -7244566 + RSINE1 SINE B4 34 164 -1 8 1717 549 257 27 40 chr4 148385747 148385897 -7244223 + B1F1 SINE Alu 1 148 -1 8 1717 261 295 56 11 chr4 148385964 148386053 -7244067 + ID_B1 SINE B4 82 174 -50 8 1717 328 266 75 0 chr4 148385973 148386067 -7244053 + PB1D10 SINE Alu 10 110 -7 8 1717 575 252 21 35 chr4 148386077 148386221 -7243899 + B1F SINE Alu 6 147 -2 8 1717 288 130 0 0 chr4 148386400 148386446 -7243674 + (TCTCC)n Simple_repeat Simple_repeat 1 46 0 8 1717 232 290 43 0 chr4 148386550 148386643 -7243477 + L1MEg LINE L1 81 177 -5907 8 1717 718 146 0 3 chr4 148387179 148387301 -7242819 - B1_Mur4 SINE Alu 0 120 1 8 1717 384 240 122 46 chr4 148387346 148387477 -7242643 + RSINE1 SINE B4 11 151 -14 8 1717 289 151 19 0 chr4 148387659 148387712 -7242408 - B3 SINE B2 -162 54 1 8 1717 345 309 10 0 chr4 148387740 148387837 -7242283 + PB1D10 SINE Alu 1 98 -19 8 1717 535 314 173 28 chr4 148388574 148388898 -7241222 + MT2A LTR ERVL 157 527 -6 8 1717 358 287 62 56 chr4 148388945 148389089 -7241031 + L1MC4 LINE L1 7896 8040 -2 8 1717 1034 96 13 0 chr4 148389092 148389248 -7240872 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 8 1717 1160 64 7 0 chr4 148389250 148389391 -7240729 - B1_Mus1 SINE Alu -6 142 1 8 1717 201 39 0 0 chr4 148389405 148389431 -7240689 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1717 906 239 22 7 chr4 148389444 148389653 -7240467 + B3A SINE B2 1 216 0 8 1717 482 244 78 108 chr4 148389770 148390077 -7240043 + L1MEg LINE L1 1416 1713 -4371 8 1717 740 269 0 6 chr4 148390078 148390239 -7239881 + RSINE1 SINE B4 2 161 -4 8 1717 360 0 0 0 chr4 148390269 148390309 -7239811 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1717 1086 38 75 0 chr4 148390406 148390539 -7239581 + B1_Mm SINE Alu 5 147 0 8 1717 658 63 0 120 chr4 148390559 148390667 -7239453 - B1_Mus1 SINE Alu -48 100 6 8 1717 255 307 114 0 chr4 148390802 148390890 -7239230 + B4A SINE B4 49 146 -146 8 1717 419 233 0 65 chr4 148390843 148390935 -7239185 + PB1D10 SINE Alu 15 100 -17 8 1717 401 267 8 91 chr4 148390980 148391112 -7239008 + ID_B1 SINE B4 78 198 -26 8 1717 228 344 0 40 chr4 148391400 148391500 -7238620 + MLT1E LTR MaLR 438 533 -120 8 1717 562 240 25 4 chr4 148391634 148391771 -7238349 - B1F2 SINE Alu -5 144 9 8 1717 593 257 115 5 chr4 148391928 148392121 -7237999 + B3A SINE B2 1 210 -6 8 1717 310 330 64 28 chr4 148392334 148392552 -7237568 + L1MC4 LINE L1 7295 7520 -522 8 1717 428 322 76 87 chr4 148392688 148393045 -7237075 + L1MC4 LINE L1 7689 8041 -1 8 1717 231 286 133 0 chr4 148393072 148393170 -7236950 + ID_B1 SINE B4 113 223 -1 8 1717 764 235 35 25 chr4 148393170 148393371 -7236749 + B3 SINE B2 1 203 -13 8 1717 266 167 0 16 chr4 148393371 148393432 -7236688 + (CATG)n Simple_repeat Simple_repeat 3 62 0 8 1717 282 246 27 14 chr4 148393433 148393507 -7236613 + B3 SINE B2 142 216 0 8 1717 303 259 241 41 chr4 148394246 148394540 -7235580 + L1MD LINE L1 4093 4445 -1701 8 1717 740 199 73 0 chr4 148394731 148394882 -7235238 + B3 SINE B2 50 211 -5 8 1717 268 317 85 0 chr4 148397308 148397390 -7232730 + ID_B1 SINE B4 70 158 -66 8 1717 233 163 20 0 chr4 148397593 148397642 -7232478 + CT-rich Low_complexity Low_complexity 2 51 0 8 1717 1208 55 0 14 chr4 148397655 148397802 -7232318 - B1_Mus2 SINE Alu -2 145 1 8 1717 319 248 42 76 chr4 148400414 148400532 -7229588 - MT2B LTR ERVL -321 280 167 8 1717 594 131 20 0 chr4 148400435 148400534 -7229586 - B1_Mus1 SINE Alu -47 101 1 8 1717 354 276 51 8 chr4 148402050 148402167 -7227953 + B1F1 SINE Alu 5 126 -23 8 1717 364 278 16 3 chr4 148402188 148402295 -7227825 + ID4_ SINE ID 9 116 -36 8 1717 216 235 0 0 chr4 148403243 148403311 -7226809 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1717 444 260 0 0 chr4 148403328 148403501 -7226619 + (TG)n Simple_repeat Simple_repeat 1 173 0 8 1717 427 302 161 46 chr4 148403505 148403765 -7226355 - B4A SINE B4 -2 290 1 8 1717 495 255 57 0 chr4 148403834 148403975 -7226145 + B1F SINE Alu 1 149 0 8 1717 892 128 41 41 chr4 148404048 148404195 -7225925 - B1_Mus2 SINE Alu 0 147 1 8 1717 272 104 42 0 chr4 148404470 148404518 -7225602 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 8 1717 594 335 79 39 chr4 148404585 148404865 -7225255 - B4A SINE B4 -1 291 1 8 1717 692 231 0 8 chr4 148404891 148405022 -7225098 + B1_Mus1 SINE Alu 1 130 -18 8 1717 625 200 206 29 chr4 148405053 148405228 -7224892 - ID_B1 SINE B4 -13 211 6 8 1717 887 291 121 82 chr4 148405428 148406024 -7224096 - MER44D DNA MER2_type -79 626 8 8 1717 374 338 102 0 chr4 148406274 148406431 -7223689 - MIR SINE MIR -49 213 41 8 1717 874 138 14 0 chr4 148406442 148406587 -7223533 - URR1A DNA MER1_type 0 226 80 8 1717 618 240 32 25 chr4 148406836 148406994 -7223126 + RSINE1 SINE B4 2 160 -5 8 1717 351 0 0 0 chr4 148406995 148407034 -7223086 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1717 290 282 80 95 chr4 148407072 148407209 -7222911 + B4A SINE B4 41 175 -117 8 1717 2311 160 25 87 chr4 148407232 148407704 -7222416 - RMER4A LTR ERVK -21 445 3 8 1717 488 239 256 22 chr4 148407816 148408086 -7222034 + L1ME2 LINE L1 5591 5923 -241 8 1717 266 330 21 0 chr4 148408098 148408192 -7221928 + ID_B1 SINE B4 81 176 -48 8 1717 399 269 10 0 chr4 148408108 148408212 -7221908 + PB1D10 SINE Alu 11 115 -2 8 1717 471 263 20 0 chr4 148409161 148409260 -7220860 + PB1 SINE Alu 1 101 -26 8 1717 183 80 0 0 chr4 148409270 148409295 -7220825 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 1717 535 275 65 0 chr4 148409480 148409618 -7220502 + B1F SINE Alu 1 147 -2 8 1717 903 157 13 13 chr4 148409671 148409820 -7220300 + B1_Mur3 SINE Alu 1 149 0 8 1717 372 223 147 35 chr4 148410309 148410425 -7219695 - RSINE1 SINE B4 -35 130 2 8 1717 408 130 0 0 chr4 148411471 148411540 -7218580 + (GGGA)n Simple_repeat Simple_repeat 3 71 0 8 1717 27 0 0 0 chr4 148413333 148413360 -7216760 + AT_rich Low_complexity Low_complexity 1 27 0 8 1717 195 42 0 0 chr4 148413405 148413429 -7216691 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 8 1717 183 156 0 0 chr4 148414144 148414176 -7215944 + CT-rich Low_complexity Low_complexity 1 32 0 8 1717 413 36 18 0 chr4 148414276 148414331 -7215789 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1717 243 125 0 0 chr4 148415744 148415784 -7214336 + (CCCCAG)n Simple_repeat Simple_repeat 6 45 0 8 1717 257 0 0 29 chr4 148416828 148416862 -7213258 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 8 1717 1185 55 7 0 chr4 148416934 148417079 -7213041 + B1_Mus2 SINE Alu 1 146 -1 8 1717 694 169 14 0 chr4 148417099 148417241 -7212879 + GA-rich Low_complexity Low_complexity 3 146 0 8 1717 240 257 35 35 chr4 148417839 148417952 -7212168 + GA-rich Low_complexity Low_complexity 1 113 0 8 1717 24 32 0 0 chr4 148420531 148420562 -7209558 + AT_rich Low_complexity Low_complexity 1 31 0 8 1717 23 0 0 0 chr4 148422097 148422120 -7208000 + AT_rich Low_complexity Low_complexity 1 23 0 8 1717 1103 57 50 0 chr4 148422436 148422576 -7207544 + B1_Mus2 SINE Alu 1 147 0 8 1717 249 109 0 0 chr4 148422578 148422624 -7207496 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1717 213 39 0 0 chr4 148422626 148422652 -7207468 + (CAG)n Simple_repeat Simple_repeat 2 27 0 8 1717 287 247 64 13 chr4 148424303 148424381 -7205739 - B1F1 SINE Alu -53 96 15 8 1717 940 172 114 45 chr4 148424536 148424737 -7205383 + B3 SINE B2 1 215 -1 8 1717 1179 57 25 0 chr4 148425574 148425733 -7204387 + B2_Mm2 SINE B2 33 195 0 8 1717 242 128 43 0 chr4 148425765 148425812 -7204308 + G-rich Low_complexity Low_complexity 3 51 0 8 1717 508 232 9 9 chr4 148425845 148425958 -7204162 + PB1D9 SINE Alu 7 119 -1 8 1717 223 174 0 0 chr4 148426883 148426929 -7203191 + (CAG)n Simple_repeat Simple_repeat 1 46 0 8 1717 758 151 25 82 chr4 148427220 148427379 -7202741 - B1_Mur4 SINE Alu 0 150 1 8 1717 465 318 57 45 chr4 148427491 148427735 -7202385 + B4A SINE B4 40 286 -6 8 1717 214 276 0 38 chr4 148427769 148427848 -7202272 + GA-rich Low_complexity Low_complexity 2 77 0 8 1717 482 229 19 0 chr4 148427944 148428049 -7202071 + PB1D9 SINE Alu 1 107 -13 8 1717 192 200 0 0 chr4 148428049 148428089 -7202031 + (TTG)n Simple_repeat Simple_repeat 2 41 0 9 1717 351 318 109 88 chr4 148428209 148428595 -7201525 + Tigger15a DNA TcMar 207 600 -115 9 1717 184 372 35 0 chr4 148428773 148428859 -7201261 - L2b LINE L2 -12 3363 3275 9 1717 402 328 31 8 chr4 148428884 148429013 -7201107 - L3 LINE CR1 -21 4468 4337 9 1717 230 219 68 14 chr4 148429047 148429121 -7200999 - PB1D7 SINE Alu -23 97 20 9 1717 204 225 42 14 chr4 148430196 148430268 -7199852 + GA-rich Low_complexity Low_complexity 5 78 0 9 1717 207 0 0 0 chr4 148431835 148431858 -7198262 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 9 1717 664 153 160 39 chr4 148433438 148433594 -7196526 + B2_Mm2 SINE B2 20 194 -1 9 1717 224 59 0 29 chr4 148435865 148435900 -7194220 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 9 1717 813 219 55 22 chr4 148437765 148437947 -7192173 + B3 SINE B2 1 188 -28 9 1717 211 286 10 30 chr4 148438144 148438245 -7191875 + GA-rich Low_complexity Low_complexity 1 99 0 9 1717 295 290 0 0 chr4 148439207 148439276 -7190844 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 9 1717 797 126 70 8 chr4 148439326 148439454 -7190666 + B1_Mur1 SINE Alu 2 137 -12 9 1717 792 329 76 71 chr4 148441768 148442195 -7187925 - Tigger13a DNA MER2_type -3 768 348 9 1717 1070 94 111 50 chr4 148442195 148442375 -7187745 + B2_Mm1t SINE B2 1 191 -2 9 1717 792 329 76 71 chr4 148442375 148442497 -7187623 - Tigger13a DNA MER2_type -424 347 217 9 1717 1530 151 0 0 chr4 148442637 148442862 -7187258 - URR1B DNA MER1_type 0 225 1 9 1717 189 0 0 0 chr4 148443041 148443062 -7187058 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 9 1717 379 164 73 37 chr4 148443108 148443190 -7186930 + PB1 SINE Alu 41 125 -2 9 1717 289 240 65 26 chr4 148445022 148445099 -7185021 + PB1D10 SINE Alu 35 114 -3 9 1717 620 183 83 8 chr4 148445322 148445443 -7184677 + B1F SINE Alu 1 130 -19 9 1717 556 236 57 129 chr4 148445830 148445865 -7184255 + B3 SINE B2 5 33 -183 9 1717 1509 72 0 5 chr4 148445865 148446060 -7184060 + B2_Mm2 SINE B2 1 194 -1 9 1717 556 236 57 129 chr4 148446060 148446233 -7183887 + B3 SINE B2 34 198 -18 9 1717 334 180 186 82 chr4 148446284 148446381 -7183739 + B1_Mur1 SINE Alu 43 149 0 9 1717 682 261 6 38 chr4 148446586 148446745 -7183375 + RSINE1 SINE B4 11 164 -1 9 1717 354 228 181 18 chr4 148446757 148446878 -7183242 + B1F2 SINE Alu 10 141 -7 9 1717 321 180 40 9 chr4 148446951 148447065 -7183055 + B1F2 SINE Alu 1 115 -5 9 1717 210 244 22 0 chr4 148447401 148447446 -7182674 - ID SINE ID -162 62 17 9 1717 328 233 126 2 chr4 148447467 148447555 -7182565 - PB1D10 SINE Alu -21 99 1 9 1717 26 0 0 0 chr4 148448329 148448355 -7181765 + AT_rich Low_complexity Low_complexity 1 26 0 9 1717 34 24 0 0 chr4 148448448 148448489 -7181631 + AT_rich Low_complexity Low_complexity 1 41 0 9 1717 22 0 0 0 chr4 148448545 148448567 -7181553 + AT_rich Low_complexity Low_complexity 1 22 0 9 1717 198 0 0 0 chr4 148449489 148449511 -7180609 + (CAGG)n Simple_repeat Simple_repeat 3 24 0 9 1717 414 318 7 33 chr4 148449548 148449701 -7180419 + B1F SINE Alu 1 149 0 9 1717 535 278 0 22 chr4 148450587 148450723 -7179397 - ID_B1 SINE B4 -2 222 90 9 1717 429 329 124 56 chr4 148451460 148451921 -7178199 + L2 LINE L2 2575 3066 -353 9 1717 601 144 123 43 chr4 148451995 148452133 -7177987 - B1_Mur3 SINE Alu 0 149 1 9 1717 316 236 77 22 chr4 148452177 148452268 -7177852 + PB1D10 SINE Alu 21 116 -1 9 1717 320 74 56 0 chr4 148452335 148452389 -7177731 + (GGGGA)n Simple_repeat Simple_repeat 2 58 0 9 1717 552 281 54 7 chr4 148452792 148452939 -7177181 + RSINE1 SINE B4 7 160 -5 9 1717 255 31 0 0 chr4 148452939 148452971 -7177149 + (CATA)n Simple_repeat Simple_repeat 4 35 0 9 1717 339 266 13 0 chr4 148453079 148453158 -7176962 + ID4_ SINE ID 3 82 -1 9 1717 507 205 34 43 chr4 148453319 148453436 -7176684 - PB1D10 SINE Alu -1 116 1 9 1717 743 163 289 0 chr4 148454064 148454230 -7175890 + B3 SINE B2 1 214 -2 9 1717 226 235 78 0 chr4 148454347 148454398 -7175722 + RSINE1 SINE B4 2 56 -109 9 1717 466 249 83 124 chr4 148454393 148454586 -7175534 + B4 SINE B4 14 198 -94 9 1717 912 151 0 0 chr4 148454487 148454626 -7175494 + B1_Mus2 SINE Alu 9 147 0 9 1717 747 221 29 0 chr4 148454670 148454806 -7175314 + B1_Mur1 SINE Alu 2 141 -8 9 1717 644 254 7 22 chr4 148454842 148454979 -7175141 + ID_B1 SINE B4 86 220 -4 9 1717 716 295 75 36 chr4 148455382 148455663 -7174457 + B4 SINE B4 1 292 0 9 1717 180 0 0 0 chr4 148456452 148456472 -7173648 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1717 553 300 134 24 chr4 148456655 148456901 -7173219 + B4A SINE B4 1 273 -19 9 1717 1595 51 0 5 chr4 148456943 148457139 -7172981 + B2_Mm2 SINE B2 1 195 0 9 1717 274 367 28 14 chr4 148457152 148457293 -7172827 + ID_B1 SINE B4 33 175 -49 9 1717 456 235 24 12 chr4 148457216 148457329 -7172791 + PB1D10 SINE Alu 18 126 -23 9 1717 462 259 93 0 chr4 148457329 148457468 -7172652 + RSINE1 SINE B4 3 154 -11 9 1717 412 223 32 11 chr4 148457599 148457694 -7172426 + ID_B1 SINE B4 102 198 -26 9 1717 553 272 25 50 chr4 148457769 148457970 -7172150 + B3 SINE B2 2 197 -19 9 1717 407 217 189 127 chr4 148458310 148458585 -7171535 + B4A SINE B4 1 292 0 9 1717 636 179 54 54 chr4 148458669 148458799 -7171321 + B1_Mur2 SINE Alu 1 130 -19 9 1717 259 248 26 0 chr4 148458834 148458951 -7171169 + L1MEc LINE L1 1347 1466 -4997 9 1717 233 196 43 0 chr4 148459102 148459148 -7170972 + L1MEc LINE L1 1603 1650 -4734 9 1717 404 230 16 74 chr4 148459208 148459330 -7170790 + PB1D10 SINE Alu 1 115 -2 9 1717 232 339 65 73 chr4 148459356 148459466 -7170654 + ID_B1 SINE B4 2 195 -97 9 1717 373 194 54 48 chr4 148459466 148459575 -7170545 + B1_Mur1 SINE Alu 20 126 -21 9 1717 232 339 65 73 chr4 148459575 148459601 -7170519 + ID_B1 SINE B4 196 244 -48 9 1717 705 284 15 30 chr4 148460125 148460325 -7169795 + B3A SINE B2 1 197 -1 9 1717 323 277 26 35 chr4 148460610 148460726 -7169394 + PB1D10 SINE Alu 1 115 -2 9 1717 282 116 0 0 chr4 148460880 148460923 -7169197 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 9 1717 660 239 29 38 chr4 148461030 148461201 -7168919 - B3 SINE B2 -10 185 1 9 1717 1235 101 0 0 chr4 148461250 148461419 -7168701 + B2_Mm2 SINE B2 1 169 -26 9 1717 284 104 311 88 chr4 148461474 148461596 -7168524 + B2_Mm2 SINE B2 47 195 0 9 1717 554 88 0 36 chr4 148461730 148461813 -7168307 - B1_Mus2 SINE Alu 0 147 68 9 1717 348 248 0 107 chr4 148461858 148461980 -7168140 - PB1D10 SINE Alu -3 114 6 9 1717 376 173 85 12 chr4 148462090 148462172 -7167948 + B1_Mus2 SINE Alu 24 111 -36 9 1717 673 195 8 23 chr4 148462161 148462292 -7167828 - B3 SINE B2 -87 129 1 9 1717 332 321 44 35 chr4 148462334 148462447 -7167673 + PB1 SINE Alu 13 126 -1 9 1717 574 168 164 23 chr4 148462447 148462575 -7167545 + B1F2 SINE Alu 1 146 -3 9 1717 468 86 0 0 chr4 148462579 148462649 -7167471 + (GGGGA)n Simple_repeat Simple_repeat 3 72 0 9 1717 735 12 0 0 chr4 148462649 148462733 -7167387 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 9 1717 796 206 20 7 chr4 148462749 148462896 -7167224 + B1_Mur3 SINE Alu 1 149 0 9 1717 290 297 62 44 chr4 148462906 148463139 -7166981 + L1ME1 LINE L1 3926 4168 -1978 9 1717 1220 41 0 14 chr4 148463139 148463287 -7166833 + B1_Mus2 SINE Alu 1 146 -1 9 1717 219 36 0 0 chr4 148463295 148463323 -7166797 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 9 1717 444 255 6 12 chr4 148463362 148463525 -7166595 + GA-rich Low_complexity Low_complexity 1 162 0 9 1717 369 317 34 15 chr4 148463532 148463737 -7166383 + L1ME1 LINE L1 4152 4360 -1786 9 1717 400 260 153 88 chr4 148463807 148464035 -7166085 + B4A SINE B4 44 286 -6 9 1717 208 378 0 0 chr4 148464036 148464126 -7165994 + (CATG)n Simple_repeat Simple_repeat 4 93 0 9 1717 826 189 110 0 chr4 148464163 148464327 -7165793 + B3A SINE B2 1 182 -16 9 1717 607 218 14 36 chr4 148464340 148464478 -7165642 + B1_Mur2 SINE Alu 2 136 -13 9 1717 1724 118 88 110 chr4 148464478 148464896 -7165224 + RMER17C LTR ERVK 2 410 0 9 1717 460 180 79 0 chr4 148464947 148465036 -7165084 + B3 SINE B2 116 211 -5 9 1717 1404 50 39 0 chr4 148465039 148465218 -7164902 + B2_Mm2 SINE B2 2 187 -8 9 1717 499 309 142 20 chr4 148465223 148465816 -7164304 + L1ME1 LINE L1 4695 5757 -602 9 1717 620 194 15 30 chr4 148465969 148466096 -7164024 + B1_Mur2 SINE Alu 18 143 -6 9 1717 237 65 0 0 chr4 148466096 148466127 -7163993 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 9 1717 319 164 14 29 chr4 148466139 148466208 -7163912 + MLT1E2 LTR MaLR 560 627 0 9 1717 671 238 46 41 chr4 148466277 148466474 -7163646 + B3A SINE B2 1 198 0 9 1717 657 186 0 17 chr4 148466469 148466584 -7163536 + B1_Mur4 SINE Alu 32 144 -6 9 1717 192 40 0 0 chr4 148466595 148466620 -7163500 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1717 825 114 45 15 chr4 148466632 148466765 -7163355 + B1_Mur4 SINE Alu 9 145 -5 9 1717 1573 37 16 5 chr4 148466767 148466956 -7163164 + B2_Mm1a SINE B2 1 191 -2 9 1717 431 250 31 0 chr4 148466999 148467095 -7163025 + RSINE1 SINE B4 64 162 -3 9 1717 1293 87 16 16 chr4 148467205 148467392 -7162728 + B2_Mm2 SINE B2 1 187 -8 9 1717 300 272 75 21 chr4 148467475 148467569 -7162551 + L1ME1 LINE L1 6014 6112 -67 9 1717 1438 28 66 16 chr4 148467715 148467897 -7162223 + B2_Mm1t SINE B2 2 192 -1 9 1717 525 261 144 52 chr4 148468060 148468254 -7161866 + B3 SINE B2 1 212 -4 1 1717 441 231 114 9 chr4 148468499 148468604 -7161516 - RSINE1 SINE B4 -19 146 31 1 1717 188 0 74 0 chr4 148468823 148468850 -7161270 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1717 214 300 42 14 chr4 148468959 148469030 -7161090 - MIR SINE MIR -32 230 158 1 1717 296 294 59 0 chr4 148469037 148469139 -7160981 - MIR SINE MIR -77 185 78 1 1717 384 22 0 0 chr4 148469275 148469320 -7160800 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1717 393 75 0 0 chr4 148469380 148469433 -7160687 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1717 321 89 0 0 chr4 148469493 148469538 -7160582 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1717 369 0 0 0 chr4 148469604 148469645 -7160475 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1717 521 234 144 40 chr4 148469903 148470077 -7160043 + B3A SINE B2 7 198 0 1 1717 485 281 15 38 chr4 148470123 148470256 -7159864 + RSINE1 SINE B4 29 158 -7 1 1717 188 34 0 33 chr4 148470258 148470288 -7159832 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1717 1235 54 0 0 chr4 148470319 148470466 -7159654 + B1_Mus1 SINE Alu 2 148 0 1 1717 597 28 0 0 chr4 148470997 148471068 -7159052 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 1 1717 1196 96 0 6 chr4 148471083 148471261 -7158859 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1 1717 892 236 53 4 chr4 148471284 148471534 -7158586 + B4A SINE B4 3 270 -22 1 1717 399 227 35 26 chr4 148471498 148471595 -7158525 + B3 SINE B2 20 118 -98 1 1717 441 0 0 0 chr4 148471595 148471644 -7158476 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1717 399 227 35 26 chr4 148471644 148471659 -7158461 + B3 SINE B2 119 132 -84 1 1717 1133 62 21 0 chr4 148471659 148471804 -7158316 + B1_Mus1 SINE Alu 1 148 0 1 1717 277 132 0 0 chr4 148471850 148471888 -7158232 + B1F SINE Alu 18 55 -94 1 1717 1171 107 11 43 chr4 148471934 148472119 -7158001 - B2_Mm2 SINE B2 -16 179 1 1 1717 576 220 30 42 chr4 148472890 148473056 -7157064 + RSINE1 SINE B4 2 165 0 1 1717 266 278 90 77 chr4 148474240 148474396 -7155724 + YREP_Mm Unknown Unknown 137 294 -1518 1 1717 662 171 65 8 chr4 148474283 148474407 -7155713 - ID_B1 SINE B4 -1 223 93 1 1717 1145 68 0 7 chr4 148474520 148474667 -7155453 + B1_Mus1 SINE Alu 3 148 0 1 1717 192 97 0 0 chr4 148474667 148474698 -7155422 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1717 222 37 0 0 chr4 148474799 148474826 -7155294 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1717 832 87 109 8 chr4 148474826 148474954 -7155166 - B1_Mus2 SINE Alu 0 147 7 1 1717 659 38 0 0 chr4 148474988 148475067 -7155053 + B2_Mm2 SINE B2 1 79 -116 1 1717 212 300 42 62 chr4 148475067 148475084 -7155036 + BC1_Mm scRNA scRNA 1 94 -58 1 1717 227 278 178 14 chr4 148475210 148475283 -7154837 + PB1D10 SINE Alu 6 90 -27 1 1717 28 0 0 0 chr4 148475308 148475336 -7154784 + AT_rich Low_complexity Low_complexity 1 28 0 1 1717 547 170 66 0 chr4 148475448 148475554 -7154566 - PB1D9 SINE Alu -7 113 1 1 1717 222 224 41 0 chr4 148475620 148475669 -7154451 - ID4 SINE ID -32 51 1 1 1717 180 0 0 0 chr4 148475701 148475721 -7154399 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1717 842 221 47 38 chr4 148476419 148476631 -7153489 + B3 SINE B2 3 216 0 1 1717 28 48 0 0 chr4 148476631 148476673 -7153447 + AT_rich Low_complexity Low_complexity 1 42 0 1 1717 468 313 57 80 chr4 148476679 148476891 -7153229 + B4 SINE B4 17 223 -69 1 1717 922 89 52 0 chr4 148476758 148476893 -7153227 + B1_Mus1 SINE Alu 7 148 0 1 1717 1618 32 0 16 chr4 148476933 148477126 -7152994 - B2_Mm1a SINE B2 -1 192 3 1 1717 471 237 161 0 chr4 148477127 148477245 -7152875 - B1_Mur3 SINE Alu -12 137 1 1 1717 587 237 44 0 chr4 148477387 148477501 -7152619 - RSINE1 SINE B4 -42 123 5 1 1717 607 164 109 0 chr4 148477629 148477739 -7152381 - B1_Mur2 SINE Alu -27 122 1 1 1717 1382 83 55 0 chr4 148477770 148477951 -7152169 + B2_Mm2 SINE B2 5 195 0 1 1717 237 280 74 21 chr4 148478855 148478950 -7151170 + MIRc SINE MIR 105 204 -64 1 1717 948 230 0 66 chr4 148479576 148479804 -7150316 + B3 SINE B2 4 216 0 1 1717 1456 43 37 16 chr4 148479815 148480004 -7150116 + B2_Mm2 SINE B2 2 194 -1 1 1717 359 296 46 0 chr4 148480008 148480116 -7150004 + MIR SINE MIR 57 169 -93 1 1717 240 272 32 32 chr4 148480509 148480604 -7149516 - L2b LINE L2 -3 3372 3278 1 1717 186 43 0 0 chr4 148480714 148480737 -7149383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1717 1064 131 7 0 chr4 148480739 148480884 -7149236 - B1_Mus2 SINE Alu 0 147 2 1 1717 259 167 0 0 chr4 148480925 148480967 -7149153 - MER20 DNA MER1_type -135 84 43 1 1717 256 304 216 35 chr4 148481262 148481378 -7148742 + B1F1 SINE Alu 1 137 -12 1 1717 633 216 0 0 chr4 148481529 148481640 -7148480 - PB1D7 SINE Alu -8 112 2 1 1717 212 93 0 44 chr4 148482133 148482178 -7147942 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 1717 1168 89 0 0 chr4 148482193 148482339 -7147781 - B1_Mus1 SINE Alu 0 148 3 1 1717 204 40 0 0 chr4 148482398 148482423 -7147697 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1717 590 143 0 0 chr4 148482425 148482509 -7147611 - B1_Mur4 SINE Alu -13 137 54 1 1717 1076 51 0 14 chr4 148482513 148482652 -7147468 + B1_Mus1 SINE Alu 12 148 0 1 1717 315 281 0 0 chr4 148482654 148482718 -7147402 - B1_Mus2 SINE Alu -83 64 1 1 1717 372 301 13 99 chr4 148482696 148482734 -7147386 - B3 SINE B2 -45 171 146 1 1717 405 90 0 0 chr4 148482734 148482801 -7147319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1717 464 277 18 0 chr4 148482801 148482913 -7147207 - B3A SINE B2 -51 147 34 1 1717 366 292 53 144 chr4 148482897 148483085 -7147035 + B4 SINE B4 122 292 0 1 1717 388 256 46 69 chr4 148483192 148483322 -7146798 - RSINE1 SINE B4 -36 129 3 1 1717 492 238 0 149 chr4 148483449 148483597 -7146523 - B1F1 SINE Alu 0 149 24 1 1717 339 208 0 72 chr4 148483649 148483732 -7146388 + PB1D10 SINE Alu 41 117 0 1 1717 975 125 0 0 chr4 148483740 148483987 -7146133 + (TG)n Simple_repeat Simple_repeat 1 247 0 1 1717 587 0 0 40 chr4 148484273 148484349 -7145771 + (TTTTG)n Simple_repeat Simple_repeat 3 75 0 1 1717 863 172 15 0 chr4 148484351 148484485 -7145635 - B1_Mur3 SINE Alu -13 136 1 1 1717 30 59 0 23 chr4 148484489 148484526 -7145594 + AT_rich Low_complexity Low_complexity 1 37 0 1 1717 1392 79 17 0 chr4 148484526 148484703 -7145417 + B2_Mm2 SINE B2 2 181 -14 1 1717 30 59 0 23 chr4 148484703 148484719 -7145401 + AT_rich Low_complexity Low_complexity 1 16 0 1 1717 1291 41 23 0 chr4 148484719 148484891 -7145229 - L1Md_F2 LINE L1 0 6582 6407 1 1717 30 59 0 23 chr4 148484891 148484923 -7145197 + AT_rich Low_complexity Low_complexity 1 32 0 1 1717 1174 76 0 0 chr4 148484926 148485071 -7145049 + B1_Mus1 SINE Alu 2 146 -2 1 1717 408 40 0 0 chr4 148485073 148485123 -7144997 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1717 992 228 0 30 chr4 148485368 148485567 -7144553 - B3A SINE B2 -4 194 2 1 1717 1216 107 36 41 chr4 148485593 148485788 -7144332 + B2_Mm2 SINE B2 2 195 0 1 1717 589 215 53 8 chr4 148485811 148485942 -7144178 + B1F1 SINE Alu 6 142 -7 1 1717 259 178 0 0 chr4 148485945 148485990 -7144130 + ID SINE ID 1 45 -179 1 1717 645 14 0 0 chr4 148486014 148486088 -7144032 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1717 2060 81 11 92 chr4 148486112 148486461 -7143659 - RLTR10B LTR ERVK -20 337 1 1 1717 1384 98 0 49 chr4 148486680 148486711 -7143409 - B2_Mm2 SINE B2 0 195 165 1 1717 1725 21 0 0 chr4 148486711 148486903 -7143217 + B2_Mm1a SINE B2 1 192 -1 1 1717 1384 98 0 49 chr4 148486903 148487076 -7143044 - B2_Mm2 SINE B2 -31 164 1 1 1717 214 345 0 0 chr4 148487103 148487158 -7142962 - ID4_ SINE ID -1 82 28 1 1717 1254 41 0 14 chr4 148487190 148487338 -7142782 - B1_Mus2 SINE Alu -1 146 1 1 1717 370 306 81 0 chr4 148487641 148487752 -7142368 - PB1 SINE Alu -7 120 1 1 1717 230 67 0 62 chr4 148487849 148487880 -7142240 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1717 1069 36 56 35 chr4 148487880 148488024 -7142096 - B1_Mm SINE Alu 0 147 1 1 1717 230 67 0 62 chr4 148488024 148488040 -7142080 + (T)n Simple_repeat Simple_repeat 1 16 0 1 1717 443 224 136 0 chr4 148488108 148488233 -7141887 + B1_Mur1 SINE Alu 1 142 -7 1 1717 507 17 0 0 chr4 148488238 148488298 -7141822 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1717 822 184 168 0 chr4 148488391 148488570 -7141550 - B3 SINE B2 -5 211 3 1 1717 504 48 0 0 chr4 148488604 148488667 -7141453 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1717 265 200 183 0 chr4 148488795 148488855 -7141265 + B4A SINE B4 2 72 -220 1 1717 385 326 83 0 chr4 148488909 148489053 -7141067 + RSINE1 SINE B4 1 156 -9 1 1717 435 254 36 58 chr4 148489124 148489262 -7140858 - B3A SINE B2 0 198 64 1 1717 1173 54 0 39 chr4 148489288 148489441 -7140679 + B1_Mus1 SINE Alu 2 148 0 1 1717 2263 219 135 59 chr4 148489456 148490254 -7139866 - RMER17B LTR ERVK -177 781 1 1 1717 357 119 0 230 chr4 148490254 148490302 -7139818 - B3A SINE B2 -130 68 36 1 1717 1245 54 0 0 chr4 148490302 148490449 -7139671 - B1_Mus2 SINE Alu 0 147 1 1 1717 357 119 0 230 chr4 148490449 148490487 -7139633 - B3A SINE B2 -163 35 2 1 1717 356 299 72 102 chr4 148490753 148491124 -7138996 - RMER20A LTR ERVK -70 557 186 1 1717 759 168 61 0 chr4 148492207 148492338 -7137782 - B1_Mur4 SINE Alu -4 146 8 1 1717 1238 41 0 7 chr4 148492834 148492982 -7137138 + B1_Mm SINE Alu 1 147 0 1 1717 239 79 26 0 chr4 148493010 148493048 -7137072 + (GGAAA)n Simple_repeat Simple_repeat 1 39 0 1 1717 1043 203 69 0 chr4 148493570 148493772 -7136348 - B3 SINE B2 0 216 1 1 1717 252 149 0 0 chr4 148494336 148494383 -7135737 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1717 638 219 0 16 chr4 148495089 148495214 -7134906 + B1F2 SINE Alu 27 149 0 1 1717 508 246 30 23 chr4 148495331 148495464 -7134656 - RSINE1 SINE B4 -25 140 7 1 1717 277 242 152 40 chr4 148495495 148495594 -7134526 + PB1 SINE Alu 1 110 -7 1 1717 264 77 0 0 chr4 148495663 148495702 -7134418 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1717 1149 51 7 0 chr4 148495702 148495840 -7134280 - B1_Mus1 SINE Alu -9 139 1 1 1717 786 194 22 0 chr4 148496320 148496459 -7133661 + B1_Mur2 SINE Alu 1 142 -7 1 1717 364 329 66 115 chr4 148496616 148496641 -7133479 - B4A SINE B4 -23 269 245 1 1717 1558 48 21 0 chr4 148496641 148496829 -7133291 - B2_Mm1t SINE B2 0 193 2 1 1717 364 329 66 115 chr4 148496829 148497047 -7133073 - B4A SINE B4 -48 244 38 1 1717 234 330 145 88 chr4 148497400 148497593 -7132527 - MTE-int LTR MaLR -414 1166 963 1 1717 302 323 0 20 chr4 148497661 148497762 -7132358 - B1F SINE Alu -49 100 2 1 1717 293 323 62 97 chr4 148497781 148497925 -7132195 + RSINE1 SINE B4 5 143 -22 1 1717 334 321 7 28 chr4 148498273 148498417 -7131703 + B1_Mur1 SINE Alu 1 141 -8 1 1717 439 238 79 0 chr4 148498781 148498882 -7131238 + PB1D10 SINE Alu 2 110 -7 1 1717 231 250 106 70 chr4 148498901 148498935 -7131185 - YREP_Mm Unknown Unknown -1485 327 186 1 1717 454 206 68 10 chr4 148498935 148499038 -7131082 + ID_B1 SINE B4 107 215 -9 1 1717 198 0 0 0 chr4 148499792 148499814 -7130306 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 1717 380 304 8 34 chr4 148499829 148499948 -7130172 + PB1D9 SINE Alu 4 119 -1 1 1717 21 0 0 0 chr4 148501547 148501568 -7128552 + AT_rich Low_complexity Low_complexity 1 21 0 1 1717 231 302 25 69 chr4 148501580 148501740 -7128380 + RSINE1 SINE B4 1 153 -12 2 1717 332 254 83 53 chr4 148503487 148503620 -7126500 + B1F2 SINE Alu 11 147 -2 3 1717 1047 213 0 5 chr4 148503621 148503833 -7126287 + B3 SINE B2 1 211 -5 4 1717 236 306 14 14 chr4 148503872 148503945 -7126175 + ID4 SINE ID 3 75 -8 5 1718 402 295 0 37 chr4 148504789 148504898 -7125222 - PB1D10 SINE Alu -12 105 1 6 1718 627 14 0 0 chr4 148506229 148506301 -7123819 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1718 847 132 111 29 chr4 148507056 148507228 -7122892 - B2_Mm2 SINE B2 -9 186 1 8 1718 244 207 139 35 chr4 148507365 148507480 -7122640 - RMER15 LTR ERVL -15 560 434 9 1718 219 263 59 29 chr4 148508092 148508172 -7121948 - L2a LINE L2 -3 3423 3290 1 1718 360 179 75 0 chr4 148508182 148508249 -7121871 + ID4_ SINE ID 12 83 0 1 1718 1307 59 26 26 chr4 148508290 148508481 -7121639 + B2_Mm1t SINE B2 1 191 -2 1 1718 1163 65 142 0 chr4 148508500 148508669 -7121451 + B2_Mm2 SINE B2 1 193 -2 1 1718 573 171 18 26 chr4 148508688 148508802 -7121318 + PB1D9 SINE Alu 3 115 -5 1 1718 203 61 30 0 chr4 148508886 148508919 -7121201 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1718 842 188 0 0 chr4 148509009 148509153 -7120967 + B1_Mus1 SINE Alu 5 148 0 1 1718 1454 57 0 5 chr4 148509192 148509385 -7120735 + B2_Mm2 SINE B2 1 192 -3 1 1718 1100 68 0 7 chr4 148509396 148509544 -7120576 + B1_Mus2 SINE Alu 1 147 0 1 1718 426 152 104 5 chr4 148509678 148509780 -7120340 - B1_Mus2 SINE Alu 0 147 13 1 1718 510 195 194 123 chr4 148509905 148510116 -7120004 - URR1A DNA MER1_type 0 226 1 2 1718 1563 36 0 0 chr4 148510208 148510400 -7119720 - B2_Mm1a SINE B2 0 193 2 2 1718 182 314 0 0 chr4 148510549 148510600 -7119520 - MIRb SINE MIR -89 179 129 2 1718 313 188 120 10 chr4 148510711 148510830 -7119290 - PB1D9 SINE Alu -13 136 7 2 1718 295 250 42 0 chr4 148510844 148510916 -7119204 - PB1D10 SINE Alu -7 110 36 2 1718 349 36 36 0 chr4 148510978 148511033 -7119087 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 2 1718 571 130 191 0 chr4 148511033 148511148 -7118972 - B1_Mus1 SINE Alu -10 138 2 2 1718 692 228 5 102 chr4 148511157 148511372 -7118748 - ID_B1 SINE B4 -9 215 22 2 1718 260 215 46 0 chr4 148511315 148511380 -7118740 - ID4 SINE ID -6 77 10 2 1718 543 246 76 54 chr4 148511824 148512009 -7118111 + B3A SINE B2 10 198 0 2 1718 606 178 8 41 chr4 148512039 148512162 -7117958 + PB1D9 SINE Alu 2 120 0 3 1718 1124 82 0 0 chr4 148512240 148512387 -7117733 + B1_Mm SINE Alu 1 147 0 3 1718 228 83 62 0 chr4 148512387 148512435 -7117685 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1718 253 237 211 78 chr4 148512439 148512567 -7117553 + RSINE1 SINE B4 12 156 -9 3 1718 523 285 140 0 chr4 148512797 148512976 -7117144 + B3 SINE B2 10 213 -3 3 1718 589 120 88 20 chr4 148512983 148513085 -7117035 + RLTR19A LTR ERVK 5 113 -386 3 1718 698 82 17 43 chr4 148513095 148513210 -7116910 + B2_Mm1a SINE B2 82 193 0 3 1718 1015 78 42 0 chr4 148513211 148513353 -7116767 + B1_Mus1 SINE Alu 1 148 0 3 1718 204 125 0 0 chr4 148513353 148513385 -7116735 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1718 353 188 88 0 chr4 148513387 148513467 -7116653 + RLTR19A LTR ERVK 95 181 -318 3 1718 1028 78 0 0 chr4 148513469 148513611 -7116509 - B1_Mus1 SINE Alu 0 148 7 3 1718 2190 227 82 6 chr4 148513640 148514163 -7115957 + RLTR20B1 LTR ERVK 1 563 0 4 1718 1377 209 46 7 chr4 148514172 148514452 -7115668 + RLTR19A LTR ERVK 206 496 0 3 1718 271 235 17 8 chr4 148514466 148514586 -7115534 + ORR1B1-int LTR MaLR 634 754 -755 4 1718 1077 22 0 21 chr4 148514488 148514629 -7115491 + B1_Mus2 SINE Alu 10 147 0 4 1718 217 93 0 44 chr4 148514631 148514676 -7115444 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1718 2777 117 50 31 chr4 148514727 148515266 -7114854 + RMER17A LTR ERVK 203 751 0 4 1718 578 71 0 12 chr4 148515335 148515420 -7114700 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 4 1718 228 257 128 37 chr4 148515462 148515571 -7114549 - MER63D DNA AcHobo -474 587 469 4 1718 1147 55 0 7 chr4 148515876 148516011 -7114109 + B1_Mus1 SINE Alu 1 135 -13 4 1718 318 26 0 0 chr4 148516011 148516050 -7114070 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 4 1718 1147 55 0 7 chr4 148516050 148516062 -7114058 + B1_Mus1 SINE Alu 136 147 -1 4 1718 398 194 18 0 chr4 148516078 148516168 -7113952 + B1_Mur2 SINE Alu 27 119 -1 4 1718 327 104 0 0 chr4 148516281 148516329 -7113791 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 5 1718 1200 110 38 6 chr4 148516335 148516518 -7113602 - B2_Mm2 SINE B2 -5 190 2 5 1718 1140 133 10 30 chr4 148517577 148517778 -7112342 - RLTR24 LTR ERV1 -332 197 1 5 1718 323 0 48 0 chr4 148518161 148518203 -7111917 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1718 1119 51 0 0 chr4 148518203 148518341 -7111779 - B1_Mus1 SINE Alu -9 139 2 5 1718 332 192 27 14 chr4 148518437 148518511 -7111609 + PB1D10 SINE Alu 43 117 0 5 1718 420 266 8 34 chr4 148519590 148519707 -7110413 - B1_Mus1 SINE Alu -34 114 1 5 1718 275 231 113 61 chr4 148519707 148519759 -7110361 - B4 SINE B4 -207 85 28 5 1718 506 91 13 0 chr4 148519785 148519862 -7110258 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1718 186 43 0 0 chr4 148519861 148519884 -7110236 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 5 1718 227 263 117 13 chr4 148519895 148519972 -7110148 - ID_B1 SINE B4 -6 218 134 6 1718 1163 28 0 0 chr4 148519990 148520132 -7109988 - B1_Mus2 SINE Alu -4 143 2 6 1718 332 255 29 67 chr4 148520151 148520256 -7109864 - B3 SINE B2 -5 211 111 6 1718 538 207 34 17 chr4 148520261 148520379 -7109741 + B1_Mur1 SINE Alu 16 135 -14 6 1718 207 0 0 0 chr4 148520382 148520405 -7109715 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1718 611 242 69 37 chr4 148520415 148520567 -7109553 + Lx8 LINE L1 6706 6863 -610 6 1718 2840 188 103 94 chr4 148520567 148521516 -7108604 + RMER17B LTR ERVK 1 958 0 6 1718 611 242 69 37 chr4 148521516 148521552 -7108568 + Lx8 LINE L1 6864 6900 -573 6 1718 316 212 58 39 chr4 148521718 148521821 -7108299 + PB1D10 SINE Alu 11 115 -2 6 1718 282 209 45 0 chr4 148521992 148522059 -7108061 - PB1D10 SINE Alu -9 108 39 6 1718 373 286 115 31 chr4 148522074 148522204 -7107916 - RSINE1 SINE B4 -18 147 7 6 1718 201 39 0 0 chr4 148522256 148522282 -7107838 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1718 239 216 0 38 chr4 148522366 148522419 -7107701 + B4A SINE B4 170 220 -72 7 1718 1081 95 0 0 chr4 148522587 148522734 -7107386 - B1_Mus1 SINE Alu 0 148 2 7 1718 296 97 435 0 chr4 148522911 148522998 -7107122 - B2_Mm2 SINE B2 -24 171 47 7 1718 1300 79 23 0 chr4 148523011 148523188 -7106932 - B2_Mm2 SINE B2 -14 181 1 7 1718 1192 34 7 0 chr4 148525363 148525510 -7104610 + B1_Mus1 SINE Alu 1 148 0 7 1718 269 250 62 0 chr4 148525760 148525840 -7104280 + RSINE1 SINE B4 2 86 -79 7 1718 180 0 0 0 chr4 148525906 148525926 -7104194 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 7 1718 540 0 0 0 chr4 148525926 148525986 -7104134 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1718 1010 176 11 16 chr4 148525986 148526171 -7103949 - B3 SINE B2 -30 186 3 7 1718 248 227 53 13 chr4 148526215 148526291 -7103829 + PB1D7 SINE Alu 42 120 0 8 1718 221 188 21 0 chr4 148526396 148526444 -7103676 + RSINE1 SINE B4 3 51 -114 8 1718 322 245 61 0 chr4 148526900 148526998 -7103122 + MERVL_2A-int LTR ERVL 1634 1737 -4024 8 1718 1030 216 117 22 chr4 148527099 148527373 -7102747 + MERVL_2A-int LTR ERVL 1975 2274 -3487 8 1718 673 114 78 9 chr4 148527642 148527757 -7102363 - B1_Mus1 SINE Alu -13 135 13 8 1718 324 276 70 39 chr4 148527757 148527770 -7102350 - ID_B1 SINE B4 -13 211 80 8 1718 459 285 8 0 chr4 148528711 148528834 -7101286 - ID_B1 SINE B4 -8 216 93 8 1718 260 221 78 0 chr4 148528765 148528842 -7101278 - PB1D7 SINE Alu -37 83 1 8 1718 655 228 0 20 chr4 148528904 148529052 -7101068 - B1_Mus2 SINE Alu -2 145 1 8 1718 369 199 228 12 chr4 148529066 148529238 -7100882 - B3 SINE B2 0 216 8 8 1718 436 173 190 95 chr4 148529278 148529425 -7100695 - B3A SINE B2 -1 197 33 8 1718 1187 81 6 17 chr4 148529425 148529592 -7100528 + B2_Mm2 SINE B2 3 169 -26 9 1718 282 56 0 0 chr4 148529592 148529628 -7100492 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 9 1718 436 173 190 95 chr4 148529637 148529668 -7100452 - B3A SINE B2 -166 32 2 8 1718 210 37 0 0 chr4 148530370 148530397 -7099723 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 9 1718 1013 58 50 0 chr4 148530398 148530537 -7099583 - B1_Mm SINE Alu -1 146 1 9 1718 326 221 93 0 chr4 148530593 148530679 -7099441 + PB1D10 SINE Alu 17 110 -7 9 1718 617 167 103 0 chr4 148531288 148531414 -7098706 - B1_Mus2 SINE Alu -8 139 1 9 1718 286 268 36 24 chr4 148531517 148531601 -7098519 - B3 SINE B2 -2 214 130 9 1718 357 231 185 0 chr4 148533309 148533417 -7096703 + RSINE1 SINE B4 2 129 -36 9 1718 243 256 32 32 chr4 148533474 148533567 -7096553 + GA-rich Low_complexity Low_complexity 4 96 0 9 1718 330 217 0 0 chr4 148534449 148534518 -7095602 + tRNA-Ala-GCY_ tRNA tRNA 2 70 -5 9 1718 275 136 60 15 chr4 148535973 148536040 -7094080 - PB1D9 SINE Alu -11 109 40 1 1718 1122 55 0 27 chr4 148536168 148536306 -7093814 + B1_Mus1 SINE Alu 2 139 -9 1 1718 220 27 54 0 chr4 148536306 148536343 -7093777 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1718 1122 55 0 27 chr4 148536343 148536354 -7093766 + B1_Mus1 SINE Alu 140 147 -1 1 1718 717 235 0 26 chr4 148536687 148536879 -7093241 - B2_Mm2 SINE B2 -5 190 4 1 1718 230 339 17 25 chr4 148537079 148537197 -7092923 + BC1_Mm scRNA scRNA 2 118 -34 1 1718 287 115 0 55 chr4 148537277 148537332 -7092788 + B1_Mur4 SINE Alu 1 52 -98 1 1718 1844 174 162 16 chr4 148537332 148537782 -7092338 + RLTR12B LTR ERVK 1 516 -12 1 1718 390 203 0 48 chr4 148537782 148537865 -7092255 + B1_Mur4 SINE Alu 63 141 -9 1 1718 270 302 24 32 chr4 148538220 148538343 -7091777 + RSINE1 SINE B4 15 136 -29 1 1718 370 316 25 19 chr4 148538381 148538542 -7091578 + RSINE1 SINE B4 3 164 -1 1 1718 28 0 0 0 chr4 148538542 148538570 -7091550 + AT_rich Low_complexity Low_complexity 1 28 0 1 1718 982 205 24 10 chr4 148538570 148538777 -7091343 + B3 SINE B2 2 211 -5 1 1718 201 39 0 0 chr4 148538782 148538808 -7091312 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1718 850 176 14 0 chr4 148538835 148538983 -7091137 + B1_Mur4 SINE Alu 1 150 0 1 1718 781 141 8 0 chr4 148539801 148539929 -7090191 - URR1B DNA MER1_type -3 222 94 1 1718 247 197 52 13 chr4 148541300 148541377 -7088743 + RSINE1 SINE B4 82 161 -4 1 1718 374 158 40 0 chr4 148541438 148541514 -7088606 - B3 SINE B2 -6 210 132 1 1718 243 88 0 0 chr4 148541689 148541723 -7088397 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1718 980 95 0 33 chr4 148541723 148541875 -7088245 - B1_Mus2 SINE Alu 0 147 1 1 1718 292 301 0 0 chr4 148542044 148542117 -7088003 - ID4 SINE ID -8 75 3 1 1718 189 0 0 0 chr4 148542369 148542390 -7087730 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1718 2523 101 90 31 chr4 148542458 148542879 -7087241 - MT2B LTR ERVL 0 601 156 1 1718 411 73 0 0 chr4 148542881 148542936 -7087184 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1718 1094 68 0 0 chr4 148542936 148543083 -7087037 - B1_Mus2 SINE Alu 0 147 1 1 1718 1413 124 52 64 chr4 148543083 148543238 -7086882 - MT2B LTR ERVL -449 152 1 1 1718 438 257 73 0 chr4 148543244 148543353 -7086767 - PB1D10 SINE Alu 0 117 1 1 1718 406 223 77 10 chr4 148543517 148543621 -7086499 - RSINE1 SINE B4 -54 111 1 1 1718 474 288 107 0 chr4 148543638 148543815 -7086305 - B3A SINE B2 0 198 3 1 1718 358 267 105 0 chr4 148543848 148543953 -7086167 - PB1D10 SINE Alu -1 116 1 1 1718 1651 16 0 0 chr4 148543967 148544159 -7085961 - B2_Mm1a SINE B2 0 193 2 1 1718 526 239 26 0 chr4 148544408 148544525 -7085595 + B3 SINE B2 96 215 -1 1 1718 1677 10 0 0 chr4 148545285 148545478 -7084642 + B2_Mm1a SINE B2 1 193 0 1 1718 339 256 26 0 chr4 148545596 148545674 -7084446 + ID4 SINE ID 2 81 -2 1 1718 204 154 0 25 chr4 148545674 148545704 -7084416 + A-rich Low_complexity Low_complexity 11 40 0 1 1718 545 106 10 0 chr4 148545902 148546006 -7084114 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1718 1127 53 148 0 chr4 148546122 148546291 -7083829 + B2_Mm2 SINE B2 2 195 0 1 1718 384 262 126 40 chr4 148546360 148546511 -7083609 + B4 SINE B4 86 249 -43 1 1718 245 250 49 89 chr4 148546889 148547012 -7083108 + B3 SINE B2 1 118 -98 1 1718 263 267 13 26 chr4 148546937 148547014 -7083106 + ID_B1 SINE B4 52 127 -97 1 1718 595 249 88 6 chr4 148547025 148547207 -7082913 + B3 SINE B2 2 198 -18 1 1718 670 274 104 5 chr4 148547289 148547491 -7082629 + ID_B1 SINE B4 1 222 -2 1 1718 433 290 54 20 chr4 148547612 148547760 -7082360 + RSINE1 SINE B4 2 154 -11 1 1718 243 0 0 0 chr4 148547760 148547787 -7082333 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1718 243 279 116 0 chr4 148547815 148547901 -7082219 + LTR79 LTR ERVL 428 523 -4 1 1718 181 306 81 0 chr4 148548088 148548150 -7081970 + L2 LINE L2 2205 2271 -1148 1 1718 323 324 9 9 chr4 148548291 148548403 -7081717 - PB1D10 SINE Alu -1 116 5 1 1718 289 333 0 47 chr4 148548449 148548534 -7081586 - RSINE1 SINE B4 0 165 85 1 1718 356 231 0 37 chr4 148548533 148548614 -7081506 - B1_Mus2 SINE Alu -69 78 1 1 1718 1339 86 32 0 chr4 148548627 148548814 -7081306 - B2_Mm2 SINE B2 -1 194 2 1 1718 495 0 0 0 chr4 148548900 148548955 -7081165 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1718 259 265 63 81 chr4 148549252 148549363 -7080757 - PB1 SINE Alu -18 109 1 1 1718 511 266 92 14 chr4 148549363 148549430 -7080690 - ID SINE ID -145 79 2 1 1718 335 259 12 12 chr4 148549430 148549504 -7080616 - PB1D10 SINE Alu -42 75 2 1 1718 1189 54 0 0 chr4 148549639 148549786 -7080334 + B1_Mus1 SINE Alu 2 148 0 1 1718 189 0 0 0 chr4 148549789 148549810 -7080310 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1 1718 1309 50 50 0 chr4 148549856 148550015 -7080105 + B2_Mm1a SINE B2 2 160 -33 1 1718 243 88 0 0 chr4 148550015 148550049 -7080071 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1718 1309 50 50 0 chr4 148550049 148550068 -7080052 + B2_Mm1a SINE B2 161 187 -6 1 1718 931 17 0 0 chr4 148550082 148550198 -7079922 - B1_Mus1 SINE Alu -11 137 22 1 1718 340 248 61 41 chr4 148550258 148550405 -7079715 + B1_Mur4 SINE Alu 1 150 0 1 1718 243 0 0 0 chr4 148552119 148552146 -7077974 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1718 24 53 0 0 chr4 148552160 148552198 -7077922 + AT_rich Low_complexity Low_complexity 1 38 0 1 1718 285 128 0 0 chr4 148552960 148553007 -7077113 + (TTTTC)n Simple_repeat Simple_repeat 5 51 0 1 1718 487 175 7 7 chr4 148554211 148554366 -7075754 + GA-rich Low_complexity Low_complexity 2 156 0 1 1718 591 209 54 0 chr4 148555019 148555148 -7074972 + URR1A DNA MER1_type 1 136 -90 1 1718 331 213 160 0 chr4 148555463 148555557 -7074563 + PB1D7 SINE Alu 1 109 -11 1 1718 218 211 19 0 chr4 148556801 148556853 -7073267 + MER5A DNA MER1_type 1 53 -136 1 1718 968 131 42 52 chr4 148556942 148557135 -7072985 + B2_Mm2 SINE B2 2 192 -3 1 1718 1158 71 130 0 chr4 148557329 148557498 -7072622 + B2_Mm2 SINE B2 1 191 -4 1 1718 405 158 0 0 chr4 148557525 148557607 -7072513 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1718 879 218 148 4 chr4 148557770 148558000 -7072120 - Lx8 LINE L1 -116 7357 7095 1 1718 553 227 20 34 chr4 148558022 148558168 -7071952 - B4A SINE B4 -139 153 10 1 1718 521 231 136 0 chr4 148558585 148558732 -7071388 - B4A SINE B4 -101 191 25 1 1718 252 242 16 16 chr4 148558878 148558941 -7071179 + GA-rich Low_complexity Low_complexity 6 68 0 1 1718 255 170 0 0 chr4 148559136 148559183 -7070937 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1 1718 614 236 8 174 chr4 148559212 148559266 -7070854 + B3A SINE B2 2 42 -156 1 1718 1175 82 0 0 chr4 148559266 148559412 -7070708 - B1_Mus2 SINE Alu 0 147 2 1 1718 995 208 0 2 chr4 148559412 148559597 -7070523 + B3 SINE B2 33 215 -1 1 1718 204 40 0 0 chr4 148559951 148559976 -7070144 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1718 616 194 67 37 chr4 148560519 148560653 -7069467 + B1_Mur2 SINE Alu 1 138 -11 1 1718 499 257 34 20 chr4 148560671 148560818 -7069302 + B1F2 SINE Alu 1 149 0 1 1718 379 279 0 0 chr4 148560858 148560937 -7069183 + ID4_ SINE ID 2 80 -3 1 1718 333 229 0 14 chr4 148561236 148561307 -7068813 - ID2 SINE ID -2 81 12 1 1718 21 0 0 0 chr4 148562379 148562400 -7067720 + AT_rich Low_complexity Low_complexity 1 21 0 1 1718 470 278 27 14 chr4 148562403 148562549 -7067571 + B1_Mur1 SINE Alu 2 149 0 1 1718 819 155 7 21 chr4 148562554 148562699 -7067421 + B1_Mm SINE Alu 5 147 0 1 1718 1571 42 21 5 chr4 148562996 148563188 -7066932 + B2_Mm2 SINE B2 1 195 0 1 1718 1182 94 14 103 chr4 148563206 148563419 -7066701 + B2_Mm2 SINE B2 2 195 0 1 1718 843 157 21 7 chr4 148563450 148563591 -7066529 - B1_Mus2 SINE Alu 0 147 5 1 1718 297 288 44 25 chr4 148564038 148564198 -7065922 - RSINE1 SINE B4 0 165 3 1 1718 1640 31 0 10 chr4 148564537 148564731 -7065389 - B2_Mm1a SINE B2 0 193 2 1 1718 1376 85 0 21 chr4 148564772 148564964 -7065156 - B2_Mm1a SINE B2 -4 189 2 1 1718 266 109 53 21 chr4 148565555 148565649 -7064471 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1718 908 169 7 0 chr4 148565711 148565859 -7064261 + B1_Mur3 SINE Alu 1 149 0 1 1718 216 67 0 0 chr4 148565871 148565901 -7064219 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1 1718 360 175 20 10 chr4 148565915 148566013 -7064107 + GA-rich Low_complexity Low_complexity 1 99 0 1 1718 475 241 86 0 chr4 148566076 148566192 -7063928 + ID_B1 SINE B4 81 206 -18 1 1718 1214 41 7 0 chr4 148566425 148566571 -7063549 + B1_Mus2 SINE Alu 1 147 0 1 1718 291 274 40 88 chr4 148566987 148567135 -7062985 + B1F2 SINE Alu 4 144 -5 1 1718 724 138 118 37 chr4 148567258 148567297 -7062823 + B1_Mus2 SINE Alu 1 42 -105 1 1718 378 0 0 0 chr4 148567297 148567339 -7062781 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1718 724 138 118 37 chr4 148567339 148567435 -7062685 + B1_Mus2 SINE Alu 43 147 0 1 1718 232 246 0 14 chr4 148568505 148568579 -7061541 - B1_Mus2 SINE Alu -65 82 10 1 1718 387 0 0 0 chr4 148568623 148568666 -7061454 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1718 369 0 0 0 chr4 148568666 148568706 -7061414 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1718 341 210 41 0 chr4 148568777 148568866 -7061254 + B1_Mur4 SINE Alu 16 107 -13 2 1718 1644 21 16 0 chr4 148569368 148569558 -7060562 + B2_Mm1a SINE B2 1 193 0 2 1718 972 155 0 20 chr4 148569856 148570007 -7060113 + B1_Mur3 SINE Alu 2 149 0 2 1718 405 0 0 0 chr4 148570072 148570117 -7060003 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1718 591 304 158 0 chr4 148570368 148570628 -7059492 + MTE2b LTR MaLR 1 301 -78 2 1718 718 196 124 11 chr4 148570791 148570977 -7059143 - B3 SINE B2 -7 209 3 2 1718 266 284 0 10 chr4 148570977 148571073 -7059047 + Tigger13a DNA MER2_type 200 294 -477 2 1718 217 295 91 40 chr4 148571427 148571526 -7058594 + RSINE1 SINE B4 50 153 -12 2 1718 442 283 26 0 chr4 148572136 148572249 -7057871 - B3A SINE B2 -81 117 2 2 1718 699 196 7 7 chr4 148572269 148572408 -7057712 - B1_Mur2 SINE Alu -2 147 9 2 1718 419 293 6 39 chr4 148572408 148572425 -7057695 - ID_B1 SINE B4 -1 223 73 2 1718 263 294 96 19 chr4 148572718 148572822 -7057298 + PB1D10 SINE Alu 6 117 0 2 1718 255 61 0 0 chr4 148572924 148572957 -7057163 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1718 306 0 0 0 chr4 148572957 148572990 -7057130 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1718 252 0 0 0 chr4 148572990 148573017 -7057103 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1718 711 154 54 0 chr4 148573075 148573205 -7056915 + B1_Mus1 SINE Alu 2 138 -10 2 1718 1246 116 21 0 chr4 148573770 148573959 -7056161 - B2_Mm2 SINE B2 0 195 3 2 1718 1830 37 0 0 chr4 148574022 148574238 -7055882 - L1Md_T LINE L1 -2 6580 6365 2 1718 1760 16 0 0 chr4 148574249 148574442 -7055678 - B2_Mm1a SINE B2 0 193 1 2 1718 465 270 44 0 chr4 148574447 148574584 -7055536 - B1F SINE Alu -5 144 2 2 1718 512 218 27 18 chr4 148574679 148574791 -7055329 + PB1D10 SINE Alu 2 114 -3 2 1718 223 241 36 36 chr4 148574798 148574854 -7055266 + ID4_ SINE ID 9 64 -19 2 1718 386 79 0 16 chr4 148574864 148574928 -7055192 + (CAAAA)n Simple_repeat Simple_repeat 1 63 0 2 1718 1127 108 42 31 chr4 148574951 148575142 -7054978 + B2_Mm2 SINE B2 1 193 -2 2 1718 224 295 46 28 chr4 148575146 148575254 -7054866 + PB1D7 SINE Alu 2 111 -9 2 1718 244 340 119 32 chr4 148575334 148575611 -7054509 - Lx8 LINE L1 -20 7453 7153 2 1718 814 150 7 26 chr4 148575728 148575879 -7054241 - B1_Mur4 SINE Alu -2 148 1 2 1718 540 235 428 0 chr4 148575885 148576140 -7053980 + MT2A LTR ERVL 94 457 -76 2 1718 1196 41 7 0 chr4 148576140 148576286 -7053834 + B1_Mus2 SINE Alu 1 147 0 2 1718 210 150 0 0 chr4 148576286 148576326 -7053794 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 2 1718 219 140 0 0 chr4 148576355 148576405 -7053715 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1718 1246 48 0 0 chr4 148577172 148577318 -7052802 - B1_Mus2 SINE Alu 0 147 2 2 1718 258 267 155 19 chr4 148577569 148577672 -7052448 + MER20 DNA MER1_type 32 148 -71 2 1718 360 0 0 0 chr4 148577808 148577848 -7052272 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1718 625 245 22 0 chr4 148577852 148577991 -7052129 - RSINE1 SINE B4 -22 143 2 2 1718 208 70 47 0 chr4 148579268 148579311 -7050809 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2 1718 461 300 55 5 chr4 148579386 148579587 -7050533 + ID_B1 SINE B4 2 212 -12 2 1718 359 251 92 125 chr4 148580016 148580376 -7049744 + L1MA6 LINE L1 5953 6300 0 2 1718 818 111 17 0 chr4 148580435 148580552 -7049568 - PB1D9 SINE Alu 0 120 2 2 1718 341 218 81 106 chr4 148580918 148581041 -7049079 - MT2B LTR ERVL -303 298 179 2 1718 384 155 0 27 chr4 148580969 148581042 -7049078 - B1_Mur4 SINE Alu -65 85 15 2 1718 609 182 97 15 chr4 148581188 148581231 -7048889 + B1_Mus2 SINE Alu 2 55 -92 2 1718 189 107 0 0 chr4 148581231 148581259 -7048861 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 2 1718 609 182 97 15 chr4 148581259 148581349 -7048771 + B1_Mus2 SINE Alu 56 146 -1 2 1718 1188 62 0 0 chr4 148581688 148581834 -7048286 + B1_Mm SINE Alu 1 146 -1 2 1718 225 0 0 0 chr4 148581838 148581863 -7048257 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1718 2142 95 71 13 chr4 148582241 148582550 -7047570 + ORR1A2 LTR MaLR 1 327 0 2 1718 1611 37 0 0 chr4 148582894 148583082 -7047038 + B2_Mm1a SINE B2 2 189 -4 2 1718 821 218 24 63 chr4 148583231 148583437 -7046683 - B3A SINE B2 0 198 1 2 1718 364 265 0 12 chr4 148583499 148583583 -7046537 - ID4 SINE ID 0 83 1 2 1718 732 80 0 0 chr4 148583611 148583711 -7046409 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 2 1718 1461 70 16 0 chr4 148583714 148583899 -7046221 + B2_Mm2 SINE B2 1 188 -7 2 1718 382 264 33 0 chr4 148584287 148584378 -7045742 - PB1D9 SINE Alu -25 95 2 2 1718 501 230 140 43 chr4 148585251 148585437 -7044683 - B3 SINE B2 -12 204 1 2 1718 1409 66 38 0 chr4 148585617 148585800 -7044320 + B2_Mm2 SINE B2 1 190 -5 2 1718 1178 63 0 0 chr4 148585811 148585953 -7044167 + B1_Mus1 SINE Alu 2 143 -5 2 1718 2095 84 17 0 chr4 148586055 148586354 -7043766 + ORR1A2 LTR MaLR 23 326 -1 2 1718 627 243 35 7 chr4 148586379 148586524 -7043596 - B3 SINE B2 -67 149 1 2 1718 943 213 124 48 chr4 148587061 148587392 -7042728 + ORR1E LTR MaLR 4 359 0 2 1718 251 217 0 32 chr4 148588602 148588624 -7041496 + T-rich Low_complexity Low_complexity 40 60 0 2 1718 950 141 206 11 chr4 148588624 148588804 -7041316 - B3 SINE B2 0 216 2 2 1718 251 217 0 32 chr4 148588804 148588843 -7041277 + T-rich Low_complexity Low_complexity 1 39 0 2 1718 1228 41 0 7 chr4 148588844 148588992 -7041128 - B1_Mus2 SINE Alu 0 147 1 2 1718 552 267 22 7 chr4 148589882 148590018 -7040102 - B1F SINE Alu -11 138 1 2 1718 249 146 0 0 chr4 148590142 148590190 -7039930 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1718 274 328 51 22 chr4 148590235 148590372 -7039748 - RSINE1 SINE B4 -21 144 4 2 1718 232 300 122 65 chr4 148591178 148591317 -7038803 + L2b LINE L2 3225 3371 -4 2 1718 398 179 90 0 chr4 148592852 148592930 -7037190 - B1_Mur2 SINE Alu -21 128 44 2 1718 230 189 38 0 chr4 148593207 148593222 -7036898 + (AATAG)n Simple_repeat Simple_repeat 4 18 0 2 1718 1147 81 0 0 chr4 148593222 148593370 -7036750 + B1_Mus1 SINE Alu 1 148 0 2 1718 230 189 38 0 chr4 148593370 148593407 -7036713 + (AATAG)n Simple_repeat Simple_repeat 5 43 0 2 1718 22 0 0 0 chr4 148593463 148593485 -7036635 + AT_rich Low_complexity Low_complexity 1 22 0 2 1718 596 232 13 50 chr4 148593841 148594000 -7036120 - ID_B1 SINE B4 0 224 72 2 1718 1020 204 24 9 chr4 148595459 148595672 -7034448 + B3 SINE B2 1 216 0 2 1718 209 170 57 0 chr4 148596703 148596756 -7033364 + GA-rich Low_complexity Low_complexity 5 60 0 2 1718 1043 106 0 0 chr4 148597153 148597295 -7032825 - B1_Mur3 SINE Alu -6 143 2 2 1718 1106 115 49 5 chr4 148597726 148597910 -7032210 - B2_Mm2 SINE B2 -1 194 3 2 1718 216 246 43 0 chr4 148598496 148598565 -7031555 + ID4_ SINE ID 1 72 -11 2 1718 620 37 0 0 chr4 148599112 148599194 -7030926 - L1Md_T LINE L1 0 6582 6501 2 1718 252 267 67 0 chr4 148599477 148599552 -7030568 - ID_B1 SINE B4 -29 195 116 2 1718 479 319 29 7 chr4 148599581 148599717 -7030403 - RSINE1 SINE B4 -24 141 3 2 1718 332 204 98 77 chr4 148599823 148599966 -7030154 + B1F SINE Alu 3 148 -1 2 1718 214 269 15 15 chr4 148600467 148600535 -7029585 + GA-rich Low_complexity Low_complexity 1 68 0 2 1718 561 135 0 0 chr4 148600838 148600927 -7029193 - B1_Mus2 SINE Alu -5 142 54 2 1718 589 238 0 181 chr4 148601005 148601226 -7028894 - B3A SINE B2 -16 182 2 2 1718 270 0 0 0 chr4 148601324 148601354 -7028766 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 1718 1192 61 0 7 chr4 148601457 148601605 -7028515 + B1_Mus1 SINE Alu 2 148 0 2 1718 227 242 21 32 chr4 148601810 148601831 -7028289 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1718 1155 75 7 0 chr4 148601831 148601977 -7028143 - B1_Mm SINE Alu 0 147 1 2 1718 227 242 21 32 chr4 148601977 148602049 -7028071 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 2 1718 508 287 32 6 chr4 148602053 148602211 -7027909 - RSINE1 SINE B4 -1 164 3 2 1718 605 208 97 15 chr4 148602479 148602674 -7027446 + B3 SINE B2 1 211 -5 2 1718 1145 101 33 27 chr4 148602869 148603052 -7027068 + B2_Mm2 SINE B2 1 184 -11 2 1718 306 0 0 0 chr4 148603340 148603374 -7026746 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1718 244 315 0 64 chr4 148604034 148604112 -7026008 + ID4_ SINE ID 2 74 -9 2 1718 374 250 76 17 chr4 148604194 148604312 -7025808 + MER5A DNA MER1_type 38 162 -27 2 1718 776 252 10 25 chr4 148604437 148604629 -7025491 + ID_B1 SINE B4 29 218 -6 2 1718 835 156 56 21 chr4 148604629 148604773 -7025347 - B1_Mur2 SINE Alu 0 149 1 2 1718 520 206 198 11 chr4 148605428 148605610 -7024510 - B3 SINE B2 0 216 1 2 1718 239 210 129 47 chr4 148605610 148605695 -7024425 - PB1D10 SINE Alu -9 108 17 2 1718 271 360 9 0 chr4 148605761 148605872 -7024248 + L2 LINE L2 2699 2810 -609 3 1718 734 164 186 26 chr4 148606443 148606638 -7023482 - B3 SINE B2 0 216 9 3 1718 24 53 0 0 chr4 148606829 148606867 -7023253 + AT_rich Low_complexity Low_complexity 1 38 0 3 1718 4701 60 3 40 chr4 148607045 148607688 -7022432 + L1_Mus1 LINE L1 5949 6567 0 3 1718 322 255 36 18 chr4 148608769 148608881 -7021239 + PB1D7 SINE Alu 1 114 -6 3 1718 192 200 0 0 chr4 148609974 148610014 -7020106 + T-rich Low_complexity Low_complexity 1 40 0 3 1718 213 252 13 83 chr4 148612599 148612755 -7017365 + A-rich Low_complexity Low_complexity 2 146 0 3 1718 385 274 44 0 chr4 148613542 148613655 -7016465 + PB1D7 SINE Alu 1 118 -2 3 1718 1415 88 22 0 chr4 148613749 148613931 -7016189 - B2_Mm2 SINE B2 -8 187 2 3 1718 275 167 33 0 chr4 148614130 148614190 -7015930 + CT-rich Low_complexity Low_complexity 3 64 0 3 1718 1037 222 31 0 chr4 148614233 148614427 -7015693 - B3 SINE B2 -13 203 4 3 1718 909 198 150 0 chr4 148614459 148614646 -7015474 - B3 SINE B2 0 216 2 3 1718 675 165 113 0 chr4 148614699 148614814 -7015306 - B1_Mur4 SINE Alu -20 130 3 3 1718 874 261 57 11 chr4 148615095 148615359 -7014761 - B4A SINE B4 -16 276 1 3 1718 359 268 12 12 chr4 148615391 148615474 -7014646 + ID4_ SINE ID 1 83 0 3 1718 255 224 0 0 chr4 148615613 148615662 -7014458 - B4A SINE B4 -235 57 9 3 1718 1215 62 7 0 chr4 148616010 148616156 -7013964 + B1_Mus2 SINE Alu 1 147 0 3 1718 746 234 65 0 chr4 148616618 148616772 -7013348 - RSINE1 SINE B4 0 165 2 3 1718 292 227 186 49 chr4 148617227 148617329 -7012791 - PB1D10 SINE Alu -1 116 1 3 1718 190 326 51 0 chr4 148617420 148617518 -7012602 + MER5A DNA MER1_type 10 112 -77 3 1718 349 320 22 88 chr4 148617659 148617796 -7012324 + MIRc SINE MIR 114 241 -27 3 1718 1418 92 5 5 chr4 148618352 148618537 -7011583 + B2_Mm2 SINE B2 2 186 -9 3 1718 658 152 51 0 chr4 148618569 148618687 -7011433 - B1_Mur4 SINE Alu -21 129 6 3 1718 208 139 0 0 chr4 148619025 148619061 -7011059 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 3 1718 213 342 92 0 chr4 148619866 148619942 -7010178 - ID SINE ID -140 84 2 3 1718 586 250 0 0 chr4 148619992 148620108 -7010012 + PB1D10 SINE Alu 2 117 0 3 1718 689 218 112 8 chr4 148620144 148620278 -7009842 + B1_Mur1 SINE Alu 2 149 0 3 1718 22 0 0 0 chr4 148621534 148621556 -7008564 + AT_rich Low_complexity Low_complexity 1 22 0 3 1718 452 190 130 0 chr4 148622297 148622397 -7007723 + B1_Mur1 SINE Alu 34 146 -3 3 1718 209 123 0 84 chr4 148622397 148622468 -7007652 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 3 1718 374 280 20 20 chr4 148622494 148622596 -7007524 - RSINE1 SINE B4 -33 132 31 3 1718 1231 123 10 26 chr4 148622732 148622924 -7007196 + B2_Mm2 SINE B2 1 189 -6 3 1718 307 238 0 45 chr4 148622947 148623013 -7007107 + B1_Mur3 SINE Alu 1 63 -86 3 1718 369 95 0 0 chr4 148623013 148623076 -7007044 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1718 763 192 15 0 chr4 148623078 148623208 -7006912 - B1_Mur4 SINE Alu -13 137 6 3 1718 899 156 21 0 chr4 148623416 148623557 -7006563 - B1_Mus2 SINE Alu -3 144 1 3 1718 676 307 28 9 chr4 148623697 148623911 -7006209 + ID_B1 SINE B4 2 219 -5 3 1718 1160 76 7 0 chr4 148624082 148624226 -7005894 - B1_Mus2 SINE Alu 0 147 3 3 1718 451 282 0 0 chr4 148624227 148624330 -7005790 - B3A SINE B2 -95 103 1 3 1718 291 333 75 0 chr4 148624342 148624435 -7005685 - ID_B1 SINE B4 -26 198 99 3 1718 232 353 173 19 chr4 148624435 148624446 -7005674 - B1F SINE Alu -29 120 1 3 1718 920 169 76 43 chr4 148624956 148625141 -7004979 + B2_Mm2 SINE B2 1 191 -4 3 1718 356 348 26 9 chr4 148625317 148625331 -7004789 - ID_B1 SINE B4 -78 146 133 3 1718 1268 55 0 0 chr4 148625331 148625476 -7004644 - B1_Mus2 SINE Alu -2 145 1 3 1718 356 348 26 9 chr4 148625476 148625577 -7004543 - ID_B1 SINE B4 -92 132 29 3 1718 1527 73 5 10 chr4 148626123 148626317 -7003803 + B2_Mm1t SINE B2 1 193 0 3 1718 1314 27 7 0 chr4 148626505 148626651 -7003469 + B1_Mus1 SINE Alu 1 147 -1 3 1718 345 321 18 59 chr4 148626800 148626969 -7003151 - RSINE1 SINE B4 -2 163 2 3 1718 1097 155 6 6 chr4 148627326 148627508 -7002612 - URR1A DNA MER1_type 0 226 45 3 1718 387 0 0 0 chr4 148627649 148627692 -7002428 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1718 1250 60 0 39 chr4 148628279 148628435 -7001685 + B1_Mur4 SINE Alu 1 150 0 3 1718 261 83 0 0 chr4 148628635 148628671 -7001449 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 3 1718 345 311 92 0 chr4 148628672 148628791 -7001329 - ID_B1 SINE B4 -13 211 82 3 1718 872 240 116 47 chr4 148630965 148631284 -6998836 + MTEa LTR MaLR 22 362 -17 3 1718 474 293 22 29 chr4 148631565 148631702 -6998418 - ID_B1 SINE B4 -10 214 79 3 1718 270 295 123 9 chr4 148631846 148631952 -6998168 - L3 LINE CR1 -165 4324 4207 3 1718 234 299 15 0 chr4 148632192 148632259 -6997861 + GA-rich Low_complexity Low_complexity 1 68 0 3 1718 222 188 62 0 chr4 148632800 148632864 -6997256 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 3 1718 608 275 0 55 chr4 148633178 148633324 -6996796 - ID_B1 SINE B4 0 224 87 3 1718 786 165 0 0 chr4 148633412 148633533 -6996587 - RSINE1 SINE B4 -42 123 3 3 1718 29 22 0 21 chr4 148634329 148634348 -6995772 + AT_rich Low_complexity Low_complexity 1 19 0 3 1718 1294 47 0 7 chr4 148634348 148634497 -6995623 - B1_Mus1 SINE Alu 0 148 1 3 1718 29 22 0 21 chr4 148634497 148634524 -6995596 + AT_rich Low_complexity Low_complexity 1 27 0 3 1718 23 33 0 0 chr4 148635516 148635546 -6994574 + AT_rich Low_complexity Low_complexity 1 30 0 3 1719 186 244 65 65 chr4 148635779 148635871 -6994249 + L2 LINE L2 1951 2042 -1377 3 1719 407 219 229 0 chr4 148636079 148636175 -6993945 - PB1D9 SINE Alu -1 119 2 3 1719 234 243 84 37 chr4 148636530 148636637 -6993483 - MIRb SINE MIR -119 149 38 3 1719 259 260 158 10 chr4 148637173 148637274 -6992846 + PB1D10 SINE Alu 1 116 -1 3 1719 21 57 0 0 chr4 148638597 148638632 -6991488 + AT_rich Low_complexity Low_complexity 1 35 0 3 1719 1464 72 39 0 chr4 148638716 148638897 -6991223 - B2_Mm2 SINE B2 -6 189 2 3 1719 225 94 0 0 chr4 148639315 148639347 -6990773 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1719 24 0 0 0 chr4 148640888 148640912 -6989208 + AT_rich Low_complexity Low_complexity 1 24 0 3 1719 373 223 288 24 chr4 148640972 148641142 -6988978 + ID_B1 SINE B4 1 215 -9 3 1719 351 183 0 62 chr4 148641436 148641528 -6988592 + B1F2 SINE Alu 1 86 -41 3 1719 280 335 95 53 chr4 148641528 148641620 -6988500 + B4 SINE B4 86 277 -15 3 1719 455 304 9 0 chr4 148641549 148641661 -6988459 + B1_Mur1 SINE Alu 26 138 -11 3 1719 848 124 16 0 chr4 148641842 148641971 -6988149 + B1_Mur2 SINE Alu 19 149 0 3 1719 438 200 67 76 chr4 148642079 148642198 -6987922 + PB1D7 SINE Alu 1 118 -2 3 1719 1275 54 0 0 chr4 148642338 148642485 -6987635 - B1_Mus2 SINE Alu 0 147 1 3 1719 257 0 30 0 chr4 148642521 148642554 -6987566 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 1719 307 294 64 19 chr4 148642667 148642823 -6987297 + L1MA10 LINE L1 6171 6333 -1 3 1719 505 310 118 23 chr4 148643149 148643370 -6986750 - MIR SINE MIR -9 253 12 3 1719 1278 54 0 0 chr4 148644331 148644478 -6985642 - B1_Mus2 SINE Alu 0 147 1 3 1719 311 362 0 25 chr4 148645073 148645192 -6984928 + PB1D10 SINE Alu 1 116 -1 3 1719 1411 90 17 0 chr4 148645198 148645375 -6984745 + B2_Mm2 SINE B2 2 181 -14 3 1719 445 279 48 0 chr4 148645587 148645691 -6984429 - PB1D10 SINE Alu -8 109 1 3 1719 769 190 24 22 chr4 148645789 148645973 -6984147 - B3 SINE B2 -1 194 10 3 1719 22 80 0 0 chr4 148645976 148646026 -6984094 + AT_rich Low_complexity Low_complexity 1 50 0 3 1719 475 282 98 83 chr4 148646090 148646295 -6983825 - B4 SINE B4 -6 286 79 3 1719 920 257 86 7 chr4 148646679 148646969 -6983151 + Lx8 LINE L1 6910 7222 -251 3 1719 229 253 93 0 chr4 148646959 148647034 -6983086 + Lx8 LINE L1 7153 7234 -239 3 1719 229 368 0 0 chr4 148647034 148647102 -6983018 + RMER15 LTR ERVL 371 438 -137 3 1719 186 43 0 0 chr4 148647305 148647328 -6982792 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1719 792 0 0 0 chr4 148647543 148647631 -6982489 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 3 1719 620 241 0 95 chr4 148647668 148647815 -6982305 + B1_Mur2 SINE Alu 2 134 -15 3 1719 795 177 15 0 chr4 148648311 148648441 -6981679 + B1_Mur2 SINE Alu 9 140 -9 3 1719 393 269 11 0 chr4 148648525 148648618 -6981502 + ID_B1 SINE B4 8 101 -123 3 1719 226 331 85 35 chr4 148648826 148648967 -6981153 + L2c LINE L2 3235 3382 -5 3 1719 1319 41 0 0 chr4 148649655 148649802 -6980318 + B1_Mus1 SINE Alu 1 147 -1 3 1719 756 0 0 0 chr4 148649802 148649886 -6980234 + (GAGAA)n Simple_repeat Simple_repeat 4 87 0 3 1719 214 333 0 37 chr4 148650003 148650084 -6980036 + ID_B1 SINE B4 80 157 -67 3 1719 232 291 149 11 chr4 148650014 148650101 -6980019 + PB1D10 SINE Alu 8 106 -11 3 1719 887 155 21 0 chr4 148650122 148650264 -6979856 - B1_Mus2 SINE Alu 0 147 3 4 1719 961 267 70 4 chr4 148650309 148650580 -6979540 + B4A SINE B4 1 289 -3 4 1719 180 0 0 0 chr4 148650584 148650604 -6979516 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1719 607 273 42 0 chr4 148650659 148650802 -6979318 + B1F SINE Alu 1 149 0 4 1719 330 26 0 0 chr4 148651209 148651248 -6978872 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1719 228 345 0 0 chr4 148651271 148651326 -6978794 + L2b LINE L2 3305 3359 -16 4 1719 222 349 95 31 chr4 148652134 148652293 -6977827 - MIR SINE MIR -51 211 48 4 1719 877 267 15 0 chr4 148652947 148653149 -6976971 - B3 SINE B2 -11 205 1 4 1719 899 194 74 6 chr4 148653208 148653384 -6976736 - B3 SINE B2 -17 199 12 4 1719 549 288 15 106 chr4 148653410 148653429 -6976691 - B3A SINE B2 -17 181 163 4 1719 189 0 0 0 chr4 148653429 148653450 -6976670 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 1719 549 288 15 106 chr4 148653450 148653628 -6976492 - B3A SINE B2 -36 162 2 4 1719 23 0 0 0 chr4 148653644 148653667 -6976453 + AT_rich Low_complexity Low_complexity 1 23 0 4 1719 222 242 48 16 chr4 148653766 148653829 -6976291 - PB1D7 SINE Alu -17 103 39 4 1719 430 248 249 48 chr4 148654195 148654360 -6975760 + B3A SINE B2 1 198 0 4 1719 198 0 0 0 chr4 148654363 148654385 -6975735 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1719 289 250 33 0 chr4 148654408 148654468 -6975652 + RSINE1 SINE B4 3 64 -101 4 1719 866 95 71 0 chr4 148654477 148654603 -6975517 + B2_Mm2 SINE B2 1 135 -60 4 1719 307 326 67 0 chr4 148654636 148654725 -6975395 + RSINE1 SINE B4 55 149 -16 4 1719 456 243 26 18 chr4 148655095 148655208 -6974912 + PB1D10 SINE Alu 3 116 -1 4 1719 300 53 0 0 chr4 148655496 148655534 -6974586 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1719 385 226 167 70 chr4 148655560 148655674 -6974446 + B1_Mm SINE Alu 9 133 -14 4 1719 1174 76 7 0 chr4 148655763 148655908 -6974212 + B1_Mus2 SINE Alu 1 146 -1 4 1719 628 214 93 0 chr4 148655949 148656089 -6974031 + B3 SINE B2 36 188 -28 4 1719 212 238 153 12 chr4 148656294 148656379 -6973741 + B4 SINE B4 1 97 -195 4 1719 613 261 48 12 chr4 148656385 148656552 -6973568 + B3A SINE B2 11 183 -15 4 1719 242 312 40 50 chr4 148657070 148657171 -6972949 + B4A SINE B4 44 143 -149 4 1719 486 226 57 0 chr4 148657116 148657222 -6972898 + B1_Mur2 SINE Alu 5 116 -33 4 1719 695 214 7 40 chr4 148657234 148657385 -6972735 - B3 SINE B2 -70 146 1 4 1719 583 271 63 44 chr4 148657465 148657623 -6972497 + RSINE1 SINE B4 3 163 -2 4 1719 391 281 76 35 chr4 148657665 148657809 -6972311 + RSINE1 SINE B4 4 153 -12 4 1719 450 0 0 0 chr4 148657830 148657880 -6972240 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1719 437 276 110 0 chr4 148658053 148658198 -6971922 + RSINE1 SINE B4 5 165 0 4 1719 1263 34 14 7 chr4 148658289 148658435 -6971685 - B1_Mus2 SINE Alu 0 147 1 4 1719 377 290 65 0 chr4 148658810 148658917 -6971203 - B1F SINE Alu 0 149 36 4 1719 730 182 65 7 chr4 148659104 148659242 -6970878 - B1_Mur3 SINE Alu -1 148 3 4 1719 253 186 0 0 chr4 148659301 148659344 -6970776 + B1_Mur4 SINE Alu 48 90 -60 4 1719 216 0 0 0 chr4 148659346 148659370 -6970750 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1719 264 59 0 0 chr4 148659375 148659409 -6970711 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1719 432 231 77 0 chr4 148659680 148659784 -6970336 + RSINE1 SINE B4 4 115 -50 4 1719 24 0 0 0 chr4 148659791 148659815 -6970305 + AT_rich Low_complexity Low_complexity 1 24 0 4 1719 348 232 105 0 chr4 148660365 148660460 -6969660 + PB1D10 SINE Alu 13 117 0 4 1719 468 274 25 44 chr4 148660605 148660765 -6969355 + RSINE1 SINE B4 1 157 -8 4 1719 342 0 0 0 chr4 148660770 148660808 -6969312 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 4 1719 207 0 0 0 chr4 148660930 148660953 -6969167 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1719 473 266 37 0 chr4 148661188 148661297 -6968823 + PB1D7 SINE Alu 7 119 -1 4 1719 180 0 0 0 chr4 148661473 148661493 -6968627 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1719 191 136 0 43 chr4 148662097 148662143 -6967977 + CT-rich Low_complexity Low_complexity 2 45 0 4 1719 1267 61 0 0 chr4 148662143 148662290 -6967830 - B1_Mus1 SINE Alu 0 148 2 4 1719 477 302 24 49 chr4 148662350 148662403 -6967717 - B3A SINE B2 0 216 170 4 1719 252 0 0 0 chr4 148662403 148662431 -6967689 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1719 477 296 23 28 chr4 148662431 148662581 -6967539 - B3A SINE B2 -25 173 22 4 1719 1681 36 0 20 chr4 148662618 148662815 -6967305 + B2_Mm1t SINE B2 1 193 0 4 1719 2042 160 212 7 chr4 148662855 148663285 -6966835 + RLTR11A2 LTR ERVK 1 518 -9 4 1719 351 60 0 0 chr4 148663367 148663417 -6966703 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1719 402 308 91 11 chr4 148663427 148663669 -6966451 - B4 SINE B4 -2 290 2 4 1719 1173 88 0 0 chr4 148663703 148663850 -6966270 + B1_Mus1 SINE Alu 2 148 0 4 1719 600 240 153 50 chr4 148664034 148664236 -6965884 + ID_B1 SINE B4 2 224 0 4 1719 773 118 165 0 chr4 148664407 148664534 -6965586 + B1_Mur4 SINE Alu 1 148 -2 4 1719 343 329 67 6 chr4 148664543 148664708 -6965412 + MTEa LTR MaLR 170 344 -35 4 1719 1230 81 103 17 chr4 148664852 148665027 -6965093 - B2_Mm2 SINE B2 -4 191 2 4 1719 203 152 0 0 chr4 148665344 148665377 -6964743 + GA-rich Low_complexity Low_complexity 2 34 0 4 1719 232 48 23 23 chr4 148665968 148666011 -6964109 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1719 757 154 21 78 chr4 148666014 148666155 -6963965 - B1_Mur4 SINE Alu -13 137 5 4 1719 198 0 0 0 chr4 148666212 148666234 -6963886 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1719 21 36 0 0 chr4 148666272 148666300 -6963820 + AT_rich Low_complexity Low_complexity 1 28 0 4 1719 210 37 0 0 chr4 148666345 148666372 -6963748 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1719 1153 60 0 0 chr4 148666372 148666506 -6963614 - B1_Mus2 SINE Alu -13 134 1 4 1719 482 199 107 0 chr4 148666518 148666649 -6963471 - Lx9 LINE L1 0 7644 7500 4 1719 370 76 336 28 chr4 148666649 148666756 -6963364 - B2_Mm2 SINE B2 -9 186 47 4 1719 1092 102 19 0 chr4 148666805 148666962 -6963158 - B2_Mm1t SINE B2 -33 160 1 4 1719 2237 216 150 35 chr4 148666964 148667569 -6962551 - Lx9 LINE L1 -163 7481 6807 4 1719 671 147 9 0 chr4 148667570 148667679 -6962441 - PB1D9 SINE Alu 0 120 11 4 1719 229 314 36 73 chr4 148667666 148667776 -6962344 - B1F2 SINE Alu -32 117 12 4 1719 322 299 127 25 chr4 148667694 148667852 -6962268 - B4 SINE B4 -117 175 2 4 1719 759 193 30 0 chr4 148667880 148668015 -6962105 - B1_Mur4 SINE Alu 0 150 12 4 1719 1577 42 0 30 chr4 148668015 148668213 -6961907 + B2_Mm1a SINE B2 2 193 0 4 1719 229 363 0 29 chr4 148668791 148668896 -6961224 + PB1D10 SINE Alu 5 106 -11 4 1719 225 132 0 117 chr4 148668972 148669032 -6961088 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1719 422 222 22 11 chr4 148669199 148669290 -6960830 - PB1D10 SINE Alu -5 112 21 4 1719 422 246 197 43 chr4 148669525 148669733 -6960387 - B4A SINE B4 -20 272 33 4 1719 3019 28 100 0 chr4 148670276 148670636 -6959484 + MTA_Mm LTR MaLR 1 396 0 4 1719 295 207 52 0 chr4 148670912 148670970 -6959150 - ID SINE ID -161 63 3 4 1719 22 56 0 0 chr4 148671056 148671092 -6959028 + AT_rich Low_complexity Low_complexity 1 36 0 4 1719 567 194 99 50 chr4 148671232 148671373 -6958747 + B1_Mur1 SINE Alu 2 149 0 4 1719 300 295 87 21 chr4 148671402 148671554 -6958566 + B4 SINE B4 125 292 0 4 1719 775 146 38 23 chr4 148671709 148671842 -6958278 + B1_Mur3 SINE Alu 2 136 -13 4 1719 25 31 0 0 chr4 148671882 148671914 -6958206 + AT_rich Low_complexity Low_complexity 1 32 0 4 1719 3893 38 0 0 chr4 148671914 148672366 -6957754 - L1Md_F2 LINE L1 -2 6580 6129 4 1719 1630 215 58 38 chr4 148672517 148672914 -6957206 + MTD LTR MaLR 1 405 -14 4 1719 992 152 128 25 chr4 148673029 148673225 -6956895 + B3 SINE B2 1 216 0 4 1719 511 222 184 27 chr4 148673292 148673477 -6956643 + B3 SINE B2 3 216 0 4 1719 234 0 0 56 chr4 148673482 148673518 -6956602 + B1_Mm SINE Alu 114 147 0 4 1719 201 143 48 0 chr4 148673518 148673560 -6956560 + A-rich Low_complexity Low_complexity 3 46 0 4 1719 26 0 0 0 chr4 148673711 148673737 -6956383 + AT_rich Low_complexity Low_complexity 1 26 0 4 1719 270 73 0 0 chr4 148673740 148673781 -6956339 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1719 627 177 78 31 chr4 148673781 148673909 -6956211 - B1_Mur2 SINE Alu -12 137 4 4 1719 551 242 51 7 chr4 148673964 148674104 -6956016 + ID_B1 SINE B4 83 224 -68 4 1719 284 320 156 0 chr4 148674112 148674133 -6955987 + B1F SINE Alu 1 148 -1 4 1719 345 318 9 0 chr4 148674133 148674240 -6955880 + ID_B1 SINE B4 116 223 -1 4 1719 268 199 421 18 chr4 148674321 148674428 -6955692 + B3 SINE B2 67 216 0 4 1719 1189 62 0 0 chr4 148674449 148674595 -6955525 + B1_Mus1 SINE Alu 1 146 -2 4 1719 893 127 176 0 chr4 148674614 148674779 -6955341 + B2_Mm2 SINE B2 1 194 -1 4 1719 204 277 0 0 chr4 148674912 148674959 -6955161 + GA-rich Low_complexity Low_complexity 5 51 0 4 1719 453 372 19 53 chr4 148675041 148675305 -6954815 + L4 LINE RTE 472 726 -1303 5 1719 435 206 0 40 chr4 148675305 148675381 -6954739 + ID SINE ID 1 73 -151 5 1719 483 300 80 72 chr4 148675825 148676192 -6953928 + L2a LINE L2 2919 3281 -94 5 1719 275 141 239 0 chr4 148676889 148676960 -6953160 + PB1D10 SINE Alu 30 117 0 5 1719 866 135 45 0 chr4 148677014 148677147 -6952973 + B1_Mur2 SINE Alu 9 147 -2 5 1719 244 259 117 33 chr4 148677555 148677675 -6952445 + MIR SINE MIR 117 246 -16 5 1719 237 167 333 0 chr4 148677997 148678063 -6952057 + BC1_Mm scRNA scRNA 1 88 -64 5 1719 222 37 0 0 chr4 148678405 148678432 -6951688 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1719 207 0 0 0 chr4 148679117 148679140 -6950980 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1719 1086 82 0 0 chr4 148679141 148679276 -6950844 - B1_Mus1 SINE Alu -12 136 2 5 1719 22 0 0 0 chr4 148679380 148679402 -6950718 + AT_rich Low_complexity Low_complexity 1 22 0 5 1719 1009 206 10 10 chr4 148679428 148679634 -6950486 + B3 SINE B2 5 210 -6 5 1719 26 0 0 0 chr4 148679694 148679720 -6950400 + AT_rich Low_complexity Low_complexity 1 26 0 5 1719 232 329 11 39 chr4 148679846 148679975 -6950145 + ID4 SINE ID 6 130 -22 5 1719 600 248 27 27 chr4 148682972 148683121 -6946999 - B1_Mur2 SINE Alu 0 149 1 5 1719 312 164 0 47 chr4 148683216 148683280 -6946840 + PB1D10 SINE Alu 53 113 -4 5 1719 294 288 66 33 chr4 148683282 148683404 -6946716 + RSINE1 SINE B4 12 137 -28 5 1719 219 254 18 0 chr4 148683476 148683531 -6946589 + ID4 SINE ID 6 61 -22 5 1719 266 125 21 0 chr4 148683543 148683591 -6946529 + (GGA)n Simple_repeat Simple_repeat 1 49 0 5 1719 475 253 109 18 chr4 148683715 148683880 -6946240 + B3A SINE B2 1 180 -18 5 1719 324 0 0 0 chr4 148683888 148683924 -6946196 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1719 235 250 62 10 chr4 148683954 148684051 -6946069 + L1MA6 LINE L1 6175 6276 -24 5 1719 1391 92 16 0 chr4 148684075 148684260 -6945860 - B2_Mm2 SINE B2 -7 188 1 5 1719 555 221 49 14 chr4 148684308 148684450 -6945670 + B1F1 SINE Alu 2 148 -1 5 1719 305 264 124 22 chr4 148685244 148685333 -6944787 + ID_B1 SINE B4 127 224 0 5 1719 719 191 35 14 chr4 148685407 148685550 -6944570 + B1_Mus2 SINE Alu 1 146 -1 5 1719 425 234 207 0 chr4 148685774 148685885 -6944235 + ID_B1 SINE B4 85 218 -6 5 1719 555 90 0 0 chr4 148685892 148685970 -6944150 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 5 1719 579 53 0 0 chr4 148686076 148686151 -6943969 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1719 651 289 30 72 chr4 148686166 148686401 -6943719 - B4 SINE B4 -65 227 3 5 1719 747 78 0 0 chr4 148686414 148686517 -6943603 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1719 475 252 219 30 chr4 148686519 148686752 -6943368 + B4A SINE B4 16 292 0 5 1719 548 233 0 49 chr4 148686840 148686962 -6943158 + RSINE1 SINE B4 12 127 -38 5 1719 627 209 45 0 chr4 148687026 148687160 -6942960 + B1_Mur1 SINE Alu 3 142 -7 5 1719 260 243 86 0 chr4 148687179 148687249 -6942871 - PB1D9 SINE Alu 0 120 45 5 1719 227 236 48 132 chr4 148687219 148687302 -6942818 - MT2B LTR ERVL -370 231 156 5 1719 680 270 24 9 chr4 148687315 148687528 -6942592 + B3 SINE B2 1 216 0 5 1719 402 39 0 0 chr4 148688706 148688758 -6941362 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1719 306 308 60 47 chr4 148688758 148688942 -6941178 - RSINE1 SINE B4 -14 278 53 5 1719 430 235 0 0 chr4 148689028 148689109 -6941011 - B1F SINE Alu -8 141 61 5 1719 21 71 0 0 chr4 148689116 148689158 -6940962 + AT_rich Low_complexity Low_complexity 1 42 0 5 1719 255 367 40 20 chr4 148689193 148689293 -6940827 - RSINE1 SINE B4 -61 104 3 5 1719 642 278 58 48 chr4 148689328 148689517 -6940603 - ID_B1 SINE B4 -5 219 29 5 1719 475 276 106 7 chr4 148689530 148689672 -6940448 - ID_B1 SINE B4 -63 161 6 5 1719 500 256 15 8 chr4 148689890 148690020 -6940100 + B1_Mur1 SINE Alu 3 133 -16 5 1719 1127 89 0 7 chr4 148690065 148690212 -6939908 + B1_Mus1 SINE Alu 2 147 -1 5 1719 244 51 67 17 chr4 148690217 148690277 -6939843 + (CAAAAA)n Simple_repeat Simple_repeat 4 66 0 5 1719 297 228 18 0 chr4 148690351 148690408 -6939712 + B1F SINE Alu 86 143 -6 5 1719 459 145 0 0 chr4 148690408 148690491 -6939629 + (GGGA)n Simple_repeat Simple_repeat 1 83 0 5 1719 479 240 90 74 chr4 148690510 148690684 -6939436 + B3A SINE B2 25 203 -13 5 1719 1158 75 0 0 chr4 148690684 148690831 -6939289 + B1_Mus2 SINE Alu 1 147 0 5 1719 430 240 90 74 chr4 148690831 148690845 -6939275 + B3 SINE B2 204 216 0 5 1719 1391 69 5 60 chr4 148690871 148691071 -6939049 + B2_Mm1a SINE B2 1 189 -4 5 1719 24 0 0 0 chr4 148691090 148691114 -6939006 + AT_rich Low_complexity Low_complexity 1 24 0 5 1719 254 0 0 77 chr4 148691153 148691192 -6938928 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1719 604 270 7 0 chr4 148691192 148691329 -6938791 - B1_Mur1 SINE Alu -11 138 1 5 1719 305 306 0 0 chr4 148691758 148691830 -6938290 + ID4 SINE ID 2 73 -10 5 1719 207 260 0 0 chr4 148691851 148691901 -6938219 + GA-rich Low_complexity Low_complexity 1 50 0 5 1719 300 354 109 23 chr4 148691975 148692241 -6937879 + MLT1D LTR MaLR 51 339 -166 5 1719 396 276 58 200 chr4 148692334 148692443 -6937677 + RSINE1 SINE B4 3 102 -63 5 1719 1192 57 0 0 chr4 148692443 148692584 -6937536 + B1_Mm SINE Alu 1 141 -6 5 1719 396 276 58 200 chr4 148692584 148692664 -6937456 + RSINE1 SINE B4 103 165 0 5 1719 414 0 0 0 chr4 148692667 148692713 -6937407 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1719 283 293 24 12 chr4 148692727 148692810 -6937310 + MLT1D LTR MaLR 422 505 0 5 1719 1247 48 0 0 chr4 148692828 148692973 -6937147 - B1_Mus2 SINE Alu -1 146 2 5 1719 556 202 10 10 chr4 148693679 148693779 -6936341 - PB1D10 SINE Alu -1 116 17 5 1719 189 154 0 0 chr4 148693801 148693840 -6936280 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1719 686 98 10 10 chr4 148693893 148693996 -6936124 - B1_Mus2 SINE Alu -2 145 43 5 1719 347 214 15 182 chr4 148693955 148694092 -6936028 - ID_B1 SINE B4 -32 192 79 5 1719 189 74 0 0 chr4 148694169 148694196 -6935924 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1719 213 275 24 24 chr4 148694234 148694316 -6935804 - ID4 SINE ID -1 82 1 5 1719 22 0 0 0 chr4 148694403 148694425 -6935695 + AT_rich Low_complexity Low_complexity 1 22 0 5 1719 5921 12 0 0 chr4 148694494 148695147 -6934973 - L1Md_A LINE L1 0 6582 5930 5 1719 1637 154 99 45 chr4 148695230 148695452 -6934668 + ORR1D1 LTR MaLR 2 223 -151 5 1719 261 83 0 0 chr4 148695452 148695488 -6934632 + (CCTG)n Simple_repeat Simple_repeat 3 38 0 5 1719 1637 154 99 45 chr4 148695488 148695619 -6934501 + ORR1D1 LTR MaLR 224 373 -1 5 1719 344 335 60 7 chr4 148695944 148696094 -6934026 + B4A SINE B4 80 237 -55 5 1719 379 150 0 0 chr4 148696109 148696169 -6933951 + B1_Mur3 SINE Alu 2 61 -88 5 1719 635 264 0 7 chr4 148696253 148696402 -6933718 + B1_Mur1 SINE Alu 1 148 -1 5 1719 303 28 0 0 chr4 148696486 148696522 -6933598 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1719 289 310 11 33 chr4 148696910 148697000 -6933120 + MLT1G1 LTR MaLR 36 123 -456 5 1719 362 328 32 8 chr4 148697336 148697462 -6932658 - ID_B1 SINE B4 -1 223 95 5 1719 368 246 60 60 chr4 148697505 148697639 -6932481 - ID_B1 SINE B4 -2 222 89 5 1719 224 252 123 61 chr4 148697675 148697789 -6932331 + L2 LINE L2 2296 2416 -1003 5 1719 620 278 73 0 chr4 148698072 148698277 -6931843 + ID_B1 SINE B4 1 220 -4 5 1719 397 188 0 76 chr4 148698590 148698682 -6931438 + ID_B1 SINE B4 140 224 0 5 1719 479 160 0 26 chr4 148698607 148698684 -6931436 + B1F SINE Alu 75 149 0 5 1719 1515 73 0 5 chr4 148698685 148698878 -6931242 + B2_Mm2 SINE B2 2 193 -2 5 1719 1656 47 0 0 chr4 148698879 148699072 -6931048 + B2_Mm1a SINE B2 1 193 0 5 1719 1279 55 12 0 chr4 148699186 148699350 -6930770 - B2_Mm2 SINE B2 -29 166 1 5 1719 584 224 167 0 chr4 148699658 148699814 -6930306 + B3 SINE B2 30 211 -5 5 1719 293 279 12 37 chr4 148699955 148700037 -6930083 + ID SINE ID 3 82 -142 5 1719 992 128 128 0 chr4 148700178 148700342 -6929778 - B2_Mm2 SINE B2 -9 186 2 5 1719 769 131 8 8 chr4 148700820 148700943 -6929177 + B1_Mur3 SINE Alu 25 147 -2 5 1719 379 178 27 14 chr4 148700940 148701014 -6929106 - ID SINE ID -148 76 2 5 1719 1303 83 61 0 chr4 148701081 148701262 -6928858 + B2_Mm1a SINE B2 2 193 0 5 1719 182 277 0 0 chr4 148701316 148701363 -6928757 + MIR SINE MIR 69 115 -147 5 1719 478 268 112 7 chr4 148701969 148702112 -6928008 - B3 SINE B2 -11 205 48 5 1719 854 45 9 0 chr4 148702144 148702255 -6927865 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 5 1719 339 212 0 0 chr4 148702258 148702338 -6927782 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1719 687 211 23 0 chr4 148702348 148702481 -6927639 - B1_Mur1 SINE Alu -13 136 1 5 1719 204 111 0 0 chr4 148702812 148702848 -6927272 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1719 22 0 0 0 chr4 148703125 148703147 -6926973 + AT_rich Low_complexity Low_complexity 1 22 0 5 1719 180 0 0 0 chr4 148703443 148703463 -6926657 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1719 247 262 80 53 chr4 148704136 148704249 -6925871 - PB1 SINE Alu -2 125 10 6 1719 1020 128 0 0 chr4 148704769 148704918 -6925202 - B2_Mm2 SINE B2 -46 149 1 6 1719 988 224 99 85 chr4 148705035 148705376 -6924744 + ORR1D1 LTR MaLR 1 382 -2 6 1719 189 213 0 0 chr4 148706358 148706405 -6923715 + T-rich Low_complexity Low_complexity 1 47 0 6 1719 1206 55 0 7 chr4 148706421 148706569 -6923551 + B1_Mm SINE Alu 1 147 0 6 1719 1191 101 71 0 chr4 148706597 148706766 -6923354 - B2_Mm2 SINE B2 -14 181 1 6 1719 503 256 16 16 chr4 148707326 148707449 -6922671 - B1_Mur1 SINE Alu -6 143 21 6 1719 1336 97 38 0 chr4 148707649 148707835 -6922285 + B2_Mm2 SINE B2 2 194 -1 6 1719 364 248 2 12 chr4 148707835 148707917 -6922203 + PB1D10 SINE Alu 6 83 -65 6 1719 226 362 20 60 chr4 148708137 148708287 -6921833 + MIR SINE MIR 50 193 -69 6 1719 259 278 133 10 chr4 148708344 148708442 -6921678 + PB1D10 SINE Alu 2 111 -6 6 1719 242 328 78 0 chr4 148708518 148708582 -6921538 - ID2 SINE ID -13 70 2 6 1719 377 245 58 19 chr4 148708584 148708688 -6921432 - PB1D10 SINE Alu 0 117 10 6 1719 222 37 0 0 chr4 148709072 148709099 -6921021 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1719 586 257 5 60 chr4 148710169 148710368 -6919752 + B3A SINE B2 2 189 -9 6 1719 1208 68 0 0 chr4 148711230 148711376 -6918744 + B1_Mus2 SINE Alu 1 146 -1 6 1719 249 218 55 0 chr4 148711845 148711900 -6918220 - tRNA-Ala-GCY_ tRNA tRNA -15 60 3 6 1719 677 141 24 32 chr4 148711985 148712110 -6918010 - URR1B DNA MER1_type 0 225 102 6 1719 644 314 5 42 chr4 148712103 148712319 -6917801 - B4 SINE B4 0 292 85 6 1719 3352 31 10 0 chr4 148712754 148713146 -6916974 + MTA_Mm LTR MaLR 1 396 0 6 1719 634 145 178 55 chr4 148713277 148713423 -6916697 - B3 SINE B2 -5 211 48 6 1719 342 283 33 0 chr4 148714386 148714478 -6915642 - ID_B1 SINE B4 -78 146 52 6 1719 256 252 66 28 chr4 148714694 148714800 -6915320 - L2 LINE L2 -1046 2373 2264 6 1719 402 250 26 35 chr4 148715598 148715714 -6914406 + PB1D9 SINE Alu 1 115 -5 6 1719 384 22 0 0 chr4 148716381 148716426 -6913694 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1719 587 254 40 8 chr4 148716444 148716633 -6913487 - B3A SINE B2 -4 212 17 6 1719 264 301 0 24 chr4 148716734 148716819 -6913301 - ID4 SINE ID 0 83 1 6 1719 361 208 69 10 chr4 148717312 148717414 -6912706 - PB1D10 SINE Alu -8 109 2 6 1719 2198 80 29 16 chr4 148718934 148719250 -6910870 - Lx3_Mus LINE L1 0 7009 6690 6 1719 403 231 114 9 chr4 148719384 148719489 -6910631 - B1_Mur2 SINE Alu -32 117 2 6 1719 180 226 14 101 chr4 148719893 148719962 -6910158 - L2b LINE L2 -1 3374 3312 6 1719 349 304 31 69 chr4 148720063 148720222 -6909898 + MIRb SINE MIR 43 195 -73 6 1719 253 140 35 0 chr4 148720369 148720426 -6909694 + CT-rich Low_complexity Low_complexity 2 60 0 6 1719 22 0 0 0 chr4 148720485 148720507 -6909613 + AT_rich Low_complexity Low_complexity 1 22 0 6 1719 317 222 49 12 chr4 148720556 148720638 -6909482 - PB1D9 SINE Alu -2 118 34 6 1719 185 224 19 58 chr4 148721232 148721284 -6908836 + L2a LINE L2 3374 3423 -3 6 1719 1276 67 88 11 chr4 148721361 148721542 -6908578 - B2_Mm2 SINE B2 0 195 1 6 1719 236 250 144 93 chr4 148721567 148721664 -6908456 - ID_B1 SINE B4 0 224 123 6 1719 312 309 93 29 chr4 148722819 148722959 -6907161 - B1_Mur2 SINE Alu 0 149 1 6 1719 979 114 7 21 chr4 148723071 148723214 -6906906 + B1_Mur4 SINE Alu 1 141 -9 6 1719 442 248 25 33 chr4 148723223 148723344 -6906776 - B2_Mm2 SINE B2 -30 165 46 6 1719 207 0 0 0 chr4 148723360 148723383 -6906737 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1719 1270 54 0 0 chr4 148723410 148723558 -6906562 + B1_Mus1 SINE Alu 1 148 0 6 1719 457 208 9 28 chr4 148723626 148723735 -6906385 - PB1D10 SINE Alu -10 107 1 6 1719 224 286 0 0 chr4 148723931 148723980 -6906140 - ID4_ SINE ID -1 82 34 6 1719 456 245 27 45 chr4 148726323 148726434 -6903686 - PB1D7 SINE Alu -11 109 1 6 1719 809 167 20 20 chr4 148727266 148727413 -6902707 - B1_Mur4 SINE Alu -1 149 3 6 1719 354 206 123 14 chr4 148727499 148727637 -6902483 + Tigger7 DNA MER2_type 2281 2433 -58 6 1719 681 179 8 0 chr4 148727631 148727748 -6902372 + B1_Mm SINE Alu 8 125 -22 6 1719 828 184 137 0 chr4 148727796 148727986 -6902134 + B3 SINE B2 1 216 0 6 1719 861 239 43 0 chr4 148728040 148728224 -6901896 + B3 SINE B2 1 192 -24 6 1719 1193 68 0 0 chr4 148728342 148728489 -6901631 + B1_Mm SINE Alu 1 147 0 6 1719 223 174 0 0 chr4 148728489 148728535 -6901585 + A-rich Low_complexity Low_complexity 4 49 0 6 1719 670 150 35 63 chr4 148728558 148728700 -6901420 + B1_Mur4 SINE Alu 13 150 0 6 1719 1199 62 0 0 chr4 148729044 148729189 -6900931 + B1_Mus2 SINE Alu 2 146 -1 6 1719 204 40 0 0 chr4 148729675 148729700 -6900420 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1719 213 65 0 0 chr4 148729753 148729784 -6900336 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 6 1719 544 283 91 73 chr4 148729836 148730122 -6899998 - B4A SINE B4 0 292 2 6 1719 566 169 8 92 chr4 148730135 148730265 -6899855 - PB1D9 SINE Alu 0 120 2 6 1719 226 246 211 0 chr4 148730849 148730906 -6899214 + PB1 SINE Alu 34 102 -25 6 1719 512 267 0 0 chr4 148731095 148731200 -6898920 - PB1D10 SINE Alu 0 117 13 6 1719 957 114 109 46 chr4 148731393 148731568 -6898552 + B2_Mm2 SINE B2 2 187 -8 6 1719 198 0 0 0 chr4 148731671 148731693 -6898427 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1719 251 167 21 0 chr4 148732378 148732426 -6897694 - MIRm SINE MIR -114 162 114 6 1719 476 335 100 6 chr4 148732432 148732612 -6897508 - RMER30 DNA MER1_type -1 201 5 6 1719 207 0 0 0 chr4 148733533 148733556 -6896564 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1719 555 16 0 0 chr4 148733556 148733619 -6896501 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1719 1232 62 0 0 chr4 148734040 148734186 -6895934 - B1_Mus2 SINE Alu 0 147 2 6 1719 529 136 19 0 chr4 148735594 148735697 -6894423 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 6 1719 392 270 30 31 chr4 148736206 148736316 -6893804 - PB1D10 SINE Alu -3 114 10 6 1719 315 195 178 33 chr4 148736790 148736880 -6893240 - B1F SINE Alu -5 144 42 6 1719 254 301 105 8 chr4 148736917 148737041 -6893079 - ID_B1 SINE B4 -9 215 80 6 1719 239 219 167 24 chr4 148737065 148737149 -6892971 - PB1D7 SINE Alu -24 96 1 6 1719 851 143 28 7 chr4 148737219 148737360 -6892760 - B1_Mus1 SINE Alu -1 147 4 6 1719 681 200 28 35 chr4 148737795 148737940 -6892180 - B1_Mur2 SINE Alu 0 149 6 6 1719 272 211 0 0 chr4 148738135 148738187 -6891933 - B4 SINE B4 -238 54 3 6 1719 21 0 0 0 chr4 148738200 148738221 -6891899 + AT_rich Low_complexity Low_complexity 1 21 0 6 1719 246 156 0 0 chr4 148738229 148738274 -6891846 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1719 424 319 40 51 chr4 148738414 148738589 -6891531 - B4A SINE B4 -118 174 2 6 1719 303 309 31 0 chr4 148738589 148738686 -6891434 + PB1D10 SINE Alu 1 100 -17 6 1719 336 269 259 17 chr4 148738715 148738889 -6891231 - B3 SINE B2 0 216 1 6 1719 265 247 222 11 chr4 148739300 148739390 -6890730 + PB1D7 SINE Alu 12 120 0 6 1719 398 103 0 29 chr4 148739393 148739463 -6890657 + (GGAAA)n Simple_repeat Simple_repeat 3 70 0 6 1719 21 36 0 0 chr4 148740721 148740749 -6889371 + AT_rich Low_complexity Low_complexity 1 28 0 6 1719 326 312 173 7 chr4 148740878 148741017 -6889103 - RSINE1 SINE B4 0 165 4 6 1719 405 264 11 11 chr4 148741842 148741934 -6888186 - B1_Mur1 SINE Alu -40 109 18 6 1719 735 243 20 31 chr4 148742844 148743048 -6887072 + B3 SINE B2 1 198 0 6 1719 198 0 0 0 chr4 148743155 148743177 -6886943 + (GTTTG)n Simple_repeat Simple_repeat 4 25 0 6 1719 651 143 107 0 chr4 148743211 148743323 -6886797 + B1_Mur2 SINE Alu 20 143 -6 6 1719 702 231 31 0 chr4 148743345 148743475 -6886645 - B1_Mus2 SINE Alu -13 134 1 6 1719 418 310 62 43 chr4 148743475 148743507 -6886613 - ID_B1 SINE B4 -13 211 47 6 1719 345 318 18 27 chr4 148743482 148743592 -6886528 - PB1D10 SINE Alu -2 115 7 6 1719 248 319 20 60 chr4 148743503 148743603 -6886517 - ID_B1 SINE B4 -49 175 80 6 1719 876 212 33 56 chr4 148743728 148743943 -6886177 + B3 SINE B2 2 211 -5 6 1719 870 136 57 0 chr4 148743959 148744099 -6886021 - B1_Mur3 SINE Alu 0 149 2 6 1719 312 27 0 0 chr4 148744099 148744136 -6885984 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1719 638 250 0 7 chr4 148744241 148744390 -6885730 - B1F2 SINE Alu 0 149 2 6 1719 1539 39 0 11 chr4 148744560 148744743 -6885377 + B2_Mm1a SINE B2 2 182 -11 6 1719 270 0 0 0 chr4 148744767 148744797 -6885323 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1719 989 197 19 48 chr4 148744917 148745125 -6884995 - B3 SINE B2 -13 203 2 6 1719 275 270 13 26 chr4 148745573 148745649 -6884471 - PB1D7 SINE Alu -9 111 37 7 1719 1356 93 16 0 chr4 148745733 148745916 -6884204 - B2_Mm2 SINE B2 -9 186 1 7 1719 493 167 98 0 chr4 148745994 148746096 -6884024 + PB1D9 SINE Alu 2 113 -7 7 1719 255 309 122 79 chr4 148746446 148746724 -6883396 + ORR1C2 LTR MaLR 78 367 -7 7 1719 231 219 55 99 chr4 148748253 148748344 -6881776 + MamRep605 Unknown Unknown 164 250 -626 7 1719 186 143 0 0 chr4 148749932 148749967 -6880153 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1719 225 315 103 44 chr4 148750020 148750156 -6879964 - B4 SINE B4 -148 144 1 7 1719 191 347 14 14 chr4 148750433 148750506 -6879614 - L2a LINE L2 -281 3145 3073 7 1719 313 182 91 0 chr4 148750761 148750838 -6879282 - L1MA6 LINE L1 -362 5938 5855 7 1719 685 202 97 2 chr4 148751116 148751261 -6878859 + B3 SINE B2 9 161 -32 7 1719 297 100 0 0 chr4 148751261 148751311 -6878809 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1719 377 327 67 18 chr4 148751311 148751331 -6878789 + B2_Mm1a SINE B2 162 181 -12 7 1719 430 233 206 43 chr4 148751345 148751529 -6878591 + B3 SINE B2 3 216 0 7 1719 748 99 182 0 chr4 148751608 148751729 -6878391 + B1_Mus2 SINE Alu 5 147 0 7 1719 224 224 0 0 chr4 148753406 148753464 -6876656 + (CAT)n Simple_repeat Simple_repeat 2 59 0 7 1719 236 268 128 74 chr4 148755695 148755722 -6874398 - B2_Mm2 SINE B2 -4 191 84 7 1719 344 282 89 18 chr4 148755722 148755834 -6874286 - RSINE1 SINE B4 0 165 46 7 1719 246 292 22 22 chr4 148755909 148756000 -6874120 + L1MC4a LINE L1 7782 7872 -10 7 1719 3046 42 5 16 chr4 148756347 148756734 -6873386 - MTB LTR MaLR 0 400 18 7 1719 813 234 0 53 chr4 148757486 148757694 -6872426 + B3A SINE B2 2 198 0 7 1719 314 277 35 24 chr4 148758107 148758192 -6871928 + B1_Mur1 SINE Alu 49 134 -15 7 1719 1039 44 15 0 chr4 148758495 148758630 -6871490 - B1_Mus1 SINE Alu 0 148 12 7 1719 471 228 81 87 chr4 148758497 148758670 -6871450 - B4A SINE B4 -68 224 53 7 1719 238 287 184 24 chr4 148758747 148758872 -6871248 + B1_Mur1 SINE Alu 1 145 -4 7 1719 369 0 0 0 chr4 148758953 148758994 -6871126 + (CTG)n Simple_repeat Simple_repeat 2 42 0 7 1719 198 0 0 0 chr4 148759146 148759168 -6870952 + (CAGA)n Simple_repeat Simple_repeat 4 25 0 7 1719 251 377 26 26 chr4 148759833 148760059 -6870061 - L1M5 LINE L1 -3480 2666 2441 7 1719 480 310 67 19 chr4 148760182 148760419 -6869701 + Tigger7 DNA MER2_type 76 350 -2141 7 1719 257 266 47 0 chr4 148760419 148760483 -6869637 + Tigger7 DNA MER2_type 965 1031 -1460 7 1719 1244 42 0 0 chr4 148760530 148760672 -6869448 + B1_Mus1 SINE Alu 2 143 -5 7 1719 207 0 0 0 chr4 148760676 148760699 -6869421 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1719 289 206 62 16 chr4 148760939 148761003 -6869117 - B2_Mm2 SINE B2 -127 68 2 7 1719 2099 161 81 43 chr4 148761573 148762015 -6868105 - RMER4A LTR ERVK -7 459 1 7 1719 306 233 8 76 chr4 148762565 148762645 -6867475 + B1_Mm SINE Alu 42 149 -1 7 1719 1381 80 32 5 chr4 148763029 148763217 -6866903 + B2_Mm2 SINE B2 2 194 -1 7 1719 520 260 96 13 chr4 148763426 148763582 -6866538 + B4A SINE B4 105 273 -19 7 1719 2817 47 70 11 chr4 148763639 148764008 -6866112 + MTB LTR MaLR 9 399 -1 7 1719 181 179 33 82 chr4 148764287 148764348 -6865772 + L4 LINE RTE 297 354 -1675 7 1719 680 203 49 28 chr4 148764416 148764558 -6865562 + B1_Mus2 SINE Alu 2 146 -1 7 1719 1021 136 14 77 chr4 148764577 148764752 -6865368 + B2_Mm2 SINE B2 2 169 -26 7 1719 1414 85 21 0 chr4 148764752 148764941 -6865179 - B2_Mm2 SINE B2 -1 194 2 7 1719 1021 136 14 77 chr4 148764941 148764972 -6865148 + B2_Mm2 SINE B2 170 195 0 7 1719 1156 154 66 5 chr4 148764998 148765194 -6864926 + B3 SINE B2 1 208 -8 7 1719 334 235 136 48 chr4 148765290 148765393 -6864727 + PB1D10 SINE Alu 1 112 -5 7 1719 354 268 152 98 chr4 148765397 148765674 -6864446 + B4 SINE B4 1 292 0 7 1719 289 302 19 9 chr4 148765692 148765799 -6864321 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1719 461 251 1 10 chr4 148766385 148766499 -6863621 - B1F SINE Alu -6 114 1 7 1720 360 0 0 0 chr4 148767242 148767282 -6862838 + (TTG)n Simple_repeat Simple_repeat 2 41 0 7 1720 495 215 66 8 chr4 148767298 148767420 -6862700 + B1_Mur1 SINE Alu 21 149 0 7 1720 231 125 0 0 chr4 148767445 148767485 -6862635 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1720 305 214 43 0 chr4 148767510 148767580 -6862540 - ID4 SINE ID -9 74 2 7 1720 484 274 9 9 chr4 148768575 148768682 -6861438 - RSINE1 SINE B4 -57 108 2 7 1720 594 205 163 16 chr4 148768699 148768828 -6861292 - B1_Mur2 SINE Alu 0 149 2 7 1720 436 321 28 42 chr4 148769280 148769423 -6860697 - RSINE1 SINE B4 -24 141 1 7 1720 318 211 0 0 chr4 148769491 148769543 -6860577 - B1F2 SINE Alu -96 53 2 7 1720 343 338 28 56 chr4 148769612 148769756 -6860364 - RSINE1 SINE B4 -24 141 2 7 1720 744 286 27 85 chr4 148769773 148770067 -6860053 + B4A SINE B4 2 278 -14 7 1720 559 308 200 3 chr4 148770142 148770452 -6859668 - L2 LINE L2 -962 2457 2087 7 1720 416 301 11 22 chr4 148770569 148770749 -6859371 + G-rich Low_complexity Low_complexity 2 179 0 7 1720 180 0 0 0 chr4 148771778 148771798 -6858322 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1720 275 220 17 0 chr4 148771862 148771921 -6858199 - ID4 SINE ID -2 81 22 7 1720 450 0 0 0 chr4 148772048 148772098 -6858022 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1720 547 288 62 35 chr4 148772141 148772368 -6857752 - B4A SINE B4 -59 233 1 7 1720 1387 56 56 6 chr4 148773035 148773215 -6856905 + B2_Mm2 SINE B2 1 189 -6 7 1720 279 0 0 0 chr4 148773255 148773286 -6856834 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1720 367 259 71 71 chr4 148773885 148774026 -6856094 - B4A SINE B4 -151 141 1 7 1720 306 0 0 0 chr4 148774162 148774196 -6855924 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1720 877 171 7 0 chr4 148774207 148774347 -6855773 - B1_Mur4 SINE Alu -3 147 7 7 1720 940 199 102 22 chr4 148774418 148774624 -6855496 + B3 SINE B2 13 216 0 7 1720 1642 16 27 0 chr4 148774695 148774883 -6855237 - B2_Mm1t SINE B2 0 193 1 7 1720 344 209 134 0 chr4 148775407 148775474 -6854646 + B4A SINE B4 1 76 -216 7 1720 355 258 93 8 chr4 148775472 148775601 -6854519 - B4A SINE B4 -152 140 1 7 1720 595 275 20 40 chr4 148775786 148775987 -6854133 + B3A SINE B2 1 197 -1 7 1720 563 268 104 10 chr4 148776010 148776202 -6853918 - B3 SINE B2 -4 212 3 7 1720 21 57 0 0 chr4 148776204 148776239 -6853881 + AT_rich Low_complexity Low_complexity 1 35 0 7 1720 639 246 30 7 chr4 148776570 148776705 -6853415 - ID_B1 SINE B4 -13 211 74 7 1720 716 177 16 16 chr4 148776742 148776868 -6853252 + B1_Mur4 SINE Alu 5 130 -20 7 1720 368 280 11 11 chr4 148776882 148776976 -6853144 + B3A SINE B2 64 157 -41 7 1720 297 51 0 0 chr4 148776994 148777033 -6853087 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1720 221 30 61 0 chr4 148777035 148777068 -6853052 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 7 1720 278 251 154 16 chr4 148777810 148777986 -6852134 - MIRb SINE MIR -24 238 35 7 1720 300 234 237 65 chr4 148778546 148778715 -6851405 - B3A SINE B2 0 198 1 7 1720 831 203 89 25 chr4 148779317 148779519 -6850601 + B3 SINE B2 2 216 0 7 1720 1136 75 0 13 chr4 148779522 148779671 -6850449 + B1_Mus1 SINE Alu 2 148 0 7 1720 217 259 68 17 chr4 148780753 148780812 -6849308 + 7SLRNA srpRNA srpRNA 21 82 -232 7 1720 24 0 0 0 chr4 148780823 148780847 -6849273 + AT_rich Low_complexity Low_complexity 1 24 0 7 1720 438 20 0 0 chr4 148780933 148780984 -6849136 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1720 368 243 93 9 chr4 148781037 148781145 -6848975 + PB1D10 SINE Alu 1 117 0 7 1720 256 300 177 83 chr4 148781127 148781381 -6848739 + MTE-int LTR MaLR 311 588 -992 7 1720 1247 48 0 0 chr4 148781387 148781534 -6848586 + B1_Mus2 SINE Alu 1 147 0 7 1720 507 287 82 5 chr4 148781736 148781932 -6848188 + B4A SINE B4 1 211 -81 7 1720 252 304 38 0 chr4 148782064 148782143 -6847977 - RSINE1 SINE B4 -81 84 3 7 1720 225 289 66 0 chr4 148782150 148782167 -6847953 + B4 SINE B4 65 86 -206 7 1720 461 238 10 0 chr4 148782167 148782268 -6847852 + PB1D10 SINE Alu 1 102 -15 7 1720 212 259 17 0 chr4 148782285 148782343 -6847777 + GA-rich Low_complexity Low_complexity 2 60 0 7 1720 218 311 73 28 chr4 148782614 148782723 -6847397 + L2a LINE L2 3312 3425 -1 7 1720 402 194 108 36 chr4 148783051 148783190 -6846930 - B1_Mur1 SINE Alu 0 149 1 7 1720 1687 31 0 0 chr4 148783296 148783488 -6846632 - B2_Mm1a SINE B2 0 193 2 7 1720 586 277 0 0 chr4 148783491 148783610 -6846510 - PB1D7 SINE Alu -1 119 1 7 1720 1209 54 0 0 chr4 148783626 148783773 -6846347 + B1_Mm SINE Alu 1 147 0 7 1720 677 261 90 10 chr4 148783987 148784188 -6845932 + B4A SINE B4 32 248 -44 7 1720 303 28 0 0 chr4 148784264 148784300 -6845820 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1720 3032 77 38 5 chr4 148784342 148784736 -6845384 + MTB_Mm LTR MaLR 1 407 0 7 1720 2087 87 26 6 chr4 148785462 148785773 -6844347 + L1_Mus3 LINE L1 6317 6633 -5 8 1720 951 229 22 5 chr4 148785846 148786030 -6844090 - B3 SINE B2 -17 199 13 8 1720 342 0 0 0 chr4 148786046 148786084 -6844036 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1720 267 54 0 0 chr4 148786087 148786124 -6843996 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1720 883 163 7 7 chr4 148786141 148786283 -6843837 - B1_Mus1 SINE Alu -6 142 1 8 1720 957 168 30 0 chr4 148786395 148786562 -6843558 + B3 SINE B2 39 210 -6 8 1720 557 147 241 0 chr4 148786563 148786679 -6843441 + B1_Mus1 SINE Alu 5 148 0 8 1720 197 289 29 16 chr4 148786858 148786936 -6843184 - L2b LINE L2 0 3426 3318 8 1720 1387 51 39 17 chr4 148787023 148787203 -6842917 - B2_Mm2 SINE B2 -9 186 3 8 1720 1393 59 0 84 chr4 148787330 148787371 -6842749 + B2_Mm2 SINE B2 1 40 -155 8 1720 1160 58 0 0 chr4 148787371 148787509 -6842611 + B1_Mus1 SINE Alu 2 139 -9 8 1720 219 36 0 0 chr4 148787509 148787537 -6842583 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1720 1393 59 0 84 chr4 148787537 148787697 -6842423 + B2_Mm2 SINE B2 41 185 -10 8 1720 293 62 0 20 chr4 148787728 148787777 -6842343 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 8 1720 273 205 41 32 chr4 148787777 148787839 -6842281 + MT2B LTR ERVL 244 312 -289 8 1720 210 152 21 42 chr4 148787834 148787882 -6842238 + PB1D10 SINE Alu 71 117 0 8 1720 286 244 3 103 chr4 148788303 148788409 -6841711 + B1_Mur1 SINE Alu 52 145 -2 8 1720 699 242 109 33 chr4 148788503 148788687 -6841433 - B3 SINE B2 0 198 1 8 1720 1159 49 21 0 chr4 148788739 148788882 -6841238 + B1_Mus2 SINE Alu 1 146 -1 8 1720 535 262 73 85 chr4 148789105 148789396 -6840724 + B4A SINE B4 29 292 0 8 1720 1355 48 18 0 chr4 148789413 148789581 -6840539 + B2_Mm2 SINE B2 1 171 -24 8 1720 238 281 32 43 chr4 148789609 148789702 -6840418 + MLT1J LTR MaLR 421 512 0 8 1720 244 331 90 90 chr4 148789725 148789829 -6840291 + MLT1J-int LTR MaLR 47 155 -1232 8 1720 345 297 130 0 chr4 148789829 148789967 -6840153 + RSINE1 SINE B4 1 156 -9 8 1720 244 331 90 90 chr4 148789967 148790051 -6840069 + MLT1J-int LTR MaLR 156 235 -1152 8 1720 1218 166 290 13 chr4 148790314 148790614 -6839506 + MTC LTR MaLR 39 421 0 8 1720 265 325 199 12 chr4 148790960 148791131 -6838989 + MLT1J LTR MaLR 69 271 -241 8 1720 1061 226 196 22 chr4 148791405 148791762 -6838358 + MTD LTR MaLR 1 419 0 8 1720 686 182 22 22 chr4 148791790 148791925 -6838195 + B1_Mur1 SINE Alu 15 149 0 8 1720 293 283 10 0 chr4 148792039 148792138 -6837982 + PB1D7 SINE Alu 5 104 -16 8 1720 261 259 68 34 chr4 148792139 148792227 -6837893 + B1_Mur1 SINE Alu 22 112 -37 8 1720 240 363 64 8 chr4 148792225 148792350 -6837770 - Kanga1 DNA Tc2 -1261 484 353 8 1720 682 297 43 80 chr4 148792436 148792736 -6837384 - B4A SINE B4 -2 290 2 8 1720 296 270 0 0 chr4 148793088 148793151 -6836969 + B4A SINE B4 2 64 -228 8 1720 1171 62 0 7 chr4 148793152 148793299 -6836821 + B1_Mm SINE Alu 2 147 0 8 1720 789 149 0 16 chr4 148793318 148793441 -6836679 + ORR1C1 LTR MaLR 59 179 -199 8 1720 234 220 0 0 chr4 148793559 148793618 -6836502 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1720 448 263 17 42 chr4 148793638 148793757 -6836363 + PB1 SINE Alu 1 116 -11 8 1720 602 236 56 14 chr4 148793768 148793910 -6836210 + B1_Mur1 SINE Alu 2 149 0 8 1720 500 239 22 0 chr4 148793930 148794022 -6836098 + B3A SINE B2 9 102 -96 8 1720 298 284 0 2 chr4 148794546 148794631 -6835489 + MIR SINE MIR 81 157 -105 8 1720 628 264 41 36 chr4 148794729 148794925 -6835195 + B3A SINE B2 2 198 0 8 1720 207 0 0 0 chr4 148795044 148795067 -6835053 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 8 1720 676 279 34 19 chr4 148795067 148795272 -6834848 - ID_B1 SINE B4 -12 212 5 8 1720 434 264 34 60 chr4 148795431 148795580 -6834540 + B1F2 SINE Alu 5 149 0 8 1720 315 0 0 0 chr4 148795597 148795632 -6834488 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 8 1720 629 224 173 0 chr4 148796130 148796309 -6833811 - B3 SINE B2 -6 210 1 8 1720 199 217 219 34 chr4 148796546 148796665 -6833455 + MIRb SINE MIR 6 146 -122 8 1720 647 105 0 0 chr4 148796731 148796817 -6833303 - B2_Mm2 SINE B2 -108 87 2 8 1720 297 200 11 86 chr4 148796866 148796959 -6833161 - YREP_Mm Unknown Unknown -1472 340 255 8 1720 553 218 0 0 chr4 148796913 148797014 -6833106 + PB1D10 SINE Alu 17 117 0 8 1720 1738 21 0 0 chr4 148797604 148797797 -6832323 - B2_Mm1t SINE B2 0 193 1 8 1720 201 39 0 0 chr4 148797843 148797869 -6832251 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1720 1009 61 107 0 chr4 148797869 148798000 -6832120 - B1_Mm SINE Alu 0 147 3 8 1720 259 165 208 11 chr4 148798162 148798250 -6831870 + PB1D9 SINE Alu 18 120 0 8 1720 245 276 17 17 chr4 148801524 148801583 -6828537 - PB1D10 SINE Alu -7 110 52 8 1720 274 194 135 27 chr4 148801643 148801717 -6828403 - MT2B LTR ERVL -322 279 198 8 1720 447 88 173 8 chr4 148801660 148801741 -6828379 - PB1D9 SINE Alu -9 111 21 8 1720 363 258 134 41 chr4 148802060 148802254 -6827866 - L1MB7 LINE L1 -57 6127 5916 8 1720 301 376 21 0 chr4 148802282 148802444 -6827676 + L2a LINE L2 2976 3147 -279 8 1720 1212 206 52 8 chr4 148802506 148802755 -6827365 - B4 SINE B4 0 292 33 8 1720 530 295 9 0 chr4 148802748 148802860 -6827260 - RSINE1 SINE B4 -41 124 12 8 1720 271 255 0 18 chr4 148802891 148802947 -6827173 + ID4_ SINE ID 2 56 -27 8 1720 22 0 0 0 chr4 148802955 148802977 -6827143 + AT_rich Low_complexity Low_complexity 1 22 0 8 1720 940 80 253 0 chr4 148803011 148803161 -6826959 - B2_Mm2 SINE B2 -7 188 1 8 1720 261 75 0 0 chr4 148803217 148803257 -6826863 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 8 1720 721 302 0 24 chr4 148803611 148803821 -6826299 + B3 SINE B2 2 206 -10 8 1720 370 314 18 94 chr4 148803851 148804190 -6825930 + RSINE1 SINE B4 2 290 -2 8 1720 889 167 14 0 chr4 148804202 148804346 -6825774 - B1_Mus1 SINE Alu -2 146 1 8 1720 180 0 0 0 chr4 148804353 148804373 -6825747 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1720 1149 81 69 11 chr4 148804383 148804557 -6825563 - B2_Mm1t SINE B2 -8 185 2 8 1720 683 265 11 11 chr4 148804624 148804789 -6825331 - ID_B1 SINE B4 -46 246 80 8 1720 184 261 98 43 chr4 148804796 148804888 -6825232 + L2 LINE L2 1876 1972 -1447 8 1720 752 160 145 0 chr4 148805227 148805358 -6824762 - B1_Mur4 SINE Alu 0 150 1 8 1720 1176 97 106 16 chr4 148805430 148805619 -6824501 + ORR1A2 LTR MaLR 1 206 -121 8 1720 2880 148 25 31 chr4 148805615 148806125 -6823995 - ORR1A2-int LTR MaLR -1442 521 15 8 1720 2191 87 11 108 chr4 148806125 148806183 -6823937 - ORR1A2 LTR MaLR 0 327 287 8 1720 461 121 297 0 chr4 148806183 148806274 -6823846 - PB1D9 SINE Alu 0 120 3 8 1720 2191 87 11 108 chr4 148806274 148806577 -6823543 - ORR1A2 LTR MaLR -41 286 1 8 1720 376 288 29 59 chr4 148806927 148807097 -6823023 - RSINE1 SINE B4 0 165 1 8 1720 252 277 0 0 chr4 148807114 148807179 -6822941 - ID_B1 SINE B4 -71 153 89 8 1720 481 40 0 39 chr4 148807203 148807281 -6822839 + (TTG)n Simple_repeat Simple_repeat 1 75 0 8 1720 1099 77 0 7 chr4 148807281 148807414 -6822706 - B1_Mm SINE Alu -13 134 2 8 1720 424 262 47 0 chr4 148807421 148807528 -6822592 - ID_B1 SINE B4 0 224 113 8 1720 690 270 198 6 chr4 148807621 148807934 -6822186 - Arthur1 DNA Tip100 -544 3403 3031 8 1720 3541 96 43 70 chr4 148808088 148808690 -6821430 - RLTR6_Mm LTR ERV1 -68 586 1 8 1720 8988 41 59 5 chr4 148808690 148811519 -6818601 - MMVL30-int LTR ERV1 0 3698 716 8 1720 401 298 13 54 chr4 148811812 148811961 -6818159 - MMVL30-int LTR ERV1 -7023 533 391 8 1720 3633 43 19 20 chr4 148811955 148812686 -6817434 - MMVL30-int LTR ERV1 -6949 829 21 8 1720 3686 95 42 68 chr4 148812686 148813306 -6816814 - RLTR6_Mm LTR ERV1 -50 604 1 8 1720 538 242 30 30 chr4 148813306 148813438 -6816682 + ID_B1 SINE B4 93 224 0 8 1720 579 211 221 54 chr4 148813456 148813635 -6816485 + B3A SINE B2 2 199 -17 8 1720 897 218 79 25 chr4 148813656 148813858 -6816262 - B3 SINE B2 -3 213 1 8 1720 293 223 140 60 chr4 148813877 148813977 -6816143 + B1_Mur3 SINE Alu 42 149 0 8 1720 469 191 11 53 chr4 148814193 148814287 -6815833 + RSINE1 SINE B4 12 101 -64 8 1720 288 0 0 0 chr4 148814291 148814323 -6815797 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1720 222 267 113 82 chr4 148814323 148814383 -6815737 + B2_Mm2 SINE B2 119 174 -21 8 1720 409 211 44 50 chr4 148814399 148814579 -6815541 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1720 947 304 46 29 chr4 148814637 148815054 -6815066 + L1MB5 LINE L1 5527 5950 -224 8 1720 895 161 7 7 chr4 148815214 148815358 -6814762 - B1_Mus2 SINE Alu 0 147 4 8 1720 1191 82 0 0 chr4 148815405 148815552 -6814568 + B1_Mus1 SINE Alu 1 147 -1 8 1720 703 217 43 21 chr4 148815582 148815723 -6814397 + B1_Mur1 SINE Alu 6 149 0 8 1720 593 126 101 67 chr4 148815733 148815852 -6814268 + B1_Mus2 SINE Alu 4 126 -21 8 1720 467 135 10 0 chr4 148815869 148815965 -6814155 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 8 1720 741 183 0 0 chr4 148815979 148816094 -6814026 - B1_Mur2 SINE Alu -32 117 3 8 1720 326 286 17 95 chr4 148815992 148816108 -6814012 - MT2B LTR ERVL -344 257 151 8 1720 267 255 92 0 chr4 148816109 148816207 -6813913 + L1MB5 LINE L1 6044 6150 -33 8 1720 729 264 10 64 chr4 148816208 148816410 -6813710 + B3A SINE B2 1 191 -7 8 1720 301 316 13 0 chr4 148816446 148816525 -6813595 - ID4 SINE ID -2 81 2 8 1720 21 0 0 0 chr4 148816566 148816587 -6813533 + AT_rich Low_complexity Low_complexity 1 21 0 9 1720 304 216 204 18 chr4 148816663 148816776 -6813344 + L1M3 LINE L1 5541 5674 -506 9 1720 274 197 110 73 chr4 148816806 148816888 -6813232 - B1_Mur3 SINE Alu 0 149 65 9 1720 522 186 31 10 chr4 148816859 148816957 -6813163 - B1F SINE Alu -27 122 23 9 1720 351 222 123 123 chr4 148817077 148817272 -6812848 + B2_Mm2 SINE B2 1 195 0 9 1720 1165 113 0 0 chr4 148817275 148817434 -6812686 + B2_Mm2 SINE B2 3 161 -34 9 1720 297 0 0 0 chr4 148817434 148817467 -6812653 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 1720 519 234 123 60 chr4 148817493 148817674 -6812446 + B3A SINE B2 26 216 0 9 1720 429 161 41 103 chr4 148817787 148817884 -6812236 + B4A SINE B4 39 129 -163 9 1720 1238 31 148 0 chr4 148817951 148818113 -6812007 - B2_Mm1a SINE B2 -6 187 2 9 1720 248 273 143 0 chr4 148818126 148818203 -6811917 - ID_B1 SINE B4 -8 216 129 9 1720 997 138 0 0 chr4 148818265 148818410 -6811710 - B1_Mur3 SINE Alu 0 149 5 9 1720 234 232 26 69 chr4 148818464 148818584 -6811536 - BC1_Mm scRNA scRNA -34 118 6 9 1720 362 301 63 95 chr4 148818655 148818813 -6811307 - RSINE1 SINE B4 -12 153 1 9 1720 733 154 28 35 chr4 148818853 148818994 -6811126 + B1_Mur1 SINE Alu 1 140 -9 9 1720 228 135 0 0 chr4 148819018 148819055 -6811065 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1720 593 238 331 18 chr4 148820525 148820801 -6809319 - MTE2b LTR MaLR -3 376 15 9 1720 5705 42 0 25 chr4 148820833 148821541 -6808579 + L1_Mus1 LINE L1 5878 6567 0 9 1720 321 20 0 0 chr4 148821764 148821813 -6808307 + L1Md_A LINE L1 6534 6582 0 9 1720 1228 47 0 0 chr4 148822023 148822171 -6807949 + B1_Mus1 SINE Alu 1 148 0 9 1720 201 154 0 0 chr4 148822172 148822211 -6807909 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1720 22 56 0 0 chr4 148822233 148822269 -6807851 + AT_rich Low_complexity Low_complexity 1 36 0 9 1720 411 135 45 0 chr4 148822288 148822377 -6807743 - L1Md_A LINE L1 -2 6580 6488 9 1720 517 263 76 32 chr4 148822417 148822574 -6807546 - RSINE1 SINE B4 -1 164 1 9 1720 1419 28 74 0 chr4 148822576 148822752 -6807368 - B2_Mm1a SINE B2 -4 189 1 9 1720 1088 43 36 0 chr4 148822857 148822987 -6807133 + B1_Mus2 SINE Alu 1 135 -12 9 1720 239 0 0 31 chr4 148822987 148823019 -6807101 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 9 1720 511 291 0 38 chr4 148823219 148823244 -6806876 + ID_B1 SINE B4 65 215 -9 9 1720 776 197 0 0 chr4 148823244 148823376 -6806744 + B1_Mur1 SINE Alu 9 140 -9 9 1720 573 28 0 0 chr4 148823380 148823451 -6806669 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 9 1720 423 0 0 0 chr4 148823455 148823502 -6806618 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 9 1720 801 128 69 22 chr4 148823503 148823683 -6806437 - B2_Mm2 SINE B2 -14 202 1 9 1720 795 200 0 0 chr4 148824255 148824390 -6805730 - B1_Mur2 SINE Alu -13 136 2 9 1720 1313 73 20 35 chr4 148824449 148824604 -6805516 + B2_Mm2 SINE B2 1 154 -41 9 1720 279 0 0 0 chr4 148824604 148824635 -6805485 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 9 1720 1313 73 20 35 chr4 148824635 148824677 -6805443 + B2_Mm2 SINE B2 155 195 0 9 1720 442 315 0 9 chr4 148824888 148824997 -6805123 - ID_B1 SINE B4 -21 203 96 9 1720 387 0 0 0 chr4 148825072 148825115 -6805005 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1720 926 148 114 24 chr4 148825120 148825286 -6804834 + B2_Mm2 SINE B2 1 181 -14 9 1720 1166 68 0 0 chr4 148825304 148825450 -6804670 - B1_Mm SINE Alu 0 147 2 9 1720 1033 128 0 0 chr4 148825489 148825638 -6804482 + B1_Mur3 SINE Alu 1 149 0 9 1720 239 87 0 42 chr4 148825638 148825686 -6804434 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 9 1720 1442 268 76 22 chr4 148825819 148826318 -6803802 + Lx7 LINE L1 6808 7333 -363 9 1720 1239 40 0 13 chr4 148826470 148826620 -6803500 - B1_Mus1 SINE Alu 0 148 1 9 1720 590 232 127 19 chr4 148826663 148826774 -6803346 + B3 SINE B2 40 163 -53 9 1720 315 0 0 0 chr4 148826774 148826809 -6803311 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1720 342 0 0 0 chr4 148826809 148826846 -6803274 + (GA)n Simple_repeat Simple_repeat 2 39 0 9 1720 590 232 127 19 chr4 148826846 148826891 -6803229 + B3 SINE B2 164 213 -3 9 1720 801 182 174 11 chr4 148827178 148827356 -6802764 - B3 SINE B2 -9 207 1 9 1720 26 0 0 0 chr4 148827660 148827686 -6802434 + AT_rich Low_complexity Low_complexity 1 26 0 9 1720 505 315 39 0 chr4 148827739 148827869 -6802251 - ID_B1 SINE B4 -8 216 82 9 1720 620 210 32 8 chr4 148827879 148828004 -6802116 - B3 SINE B2 -17 199 72 9 1720 669 242 0 32 chr4 148828121 148828275 -6801845 + B1F SINE Alu 1 149 0 9 1720 1168 58 0 0 chr4 148829535 148829674 -6800446 - B1_Mm SINE Alu -8 139 1 9 1720 1330 75 32 11 chr4 148829675 148829865 -6800255 - B2_Mm2 SINE B2 0 195 2 9 1720 1634 46 0 5 chr4 148829963 148830159 -6799961 + B2_Mm2 SINE B2 1 195 0 9 1720 356 343 52 15 chr4 148830193 148830329 -6799791 - MLT1G1 LTR MaLR -281 298 158 9 1720 260 176 145 14 chr4 148830369 148830438 -6799682 + ID2 SINE ID 3 80 -3 9 1720 890 243 112 12 chr4 148830450 148830708 -6799412 - MTE2a LTR MaLR -1 378 95 9 1720 919 200 0 0 chr4 148830783 148830928 -6799192 + B1_Mus2 SINE Alu 2 146 -1 9 1720 185 83 28 0 chr4 148830939 148830975 -6799145 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 9 1720 228 86 0 0 chr4 148831014 148831049 -6799071 + (TCTCCC)n Simple_repeat Simple_repeat 2 36 0 9 1720 315 0 0 0 chr4 148831171 148831206 -6798914 + (ACTG)n Simple_repeat Simple_repeat 4 38 0 9 1720 213 39 0 0 chr4 148831981 148832007 -6798113 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1720 274 276 167 39 chr4 148833460 148833562 -6796558 - PB1D10 SINE Alu -2 115 1 9 1720 250 277 0 0 chr4 148833566 148833631 -6796489 - L1MB1 LINE L1 -47 6121 6057 9 1720 1410 152 4 13 chr4 148833632 148833859 -6796261 + URR1B DNA MER1_type 1 225 0 9 1720 1482 68 5 5 chr4 148833893 148834084 -6796036 - B2_Mm1a SINE B2 -2 191 1 9 1720 1117 126 49 6 chr4 148834089 148834272 -6795848 - B2_Mm2 SINE B2 -4 191 1 9 1720 366 139 0 0 chr4 148834276 148834316 -6795804 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1720 1176 75 0 0 chr4 148834316 148834463 -6795657 - B1_Mus2 SINE Alu 0 147 1 9 1720 366 139 0 0 chr4 148834463 148834501 -6795619 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1720 958 160 35 50 chr4 148834502 148834526 -6795594 - B2_Mm2 SINE B2 0 195 173 9 1720 1512 37 15 65 chr4 148834526 148834727 -6795393 + B2_Mm1a SINE B2 1 191 -2 9 1720 958 160 35 50 chr4 148834727 148834900 -6795220 - B2_Mm2 SINE B2 -23 172 1 9 1720 953 221 28 18 chr4 148835078 148835295 -6794825 + ID_B1 SINE B4 3 221 -3 9 1720 375 213 80 44 chr4 148835310 148835423 -6794697 + PB1D10 SINE Alu 1 117 0 9 1720 201 129 0 0 chr4 148835785 148835816 -6794304 + (C)n Simple_repeat Simple_repeat 1 31 0 9 1720 252 279 0 29 chr4 148836516 148836586 -6793534 + CT-rich Low_complexity Low_complexity 2 69 0 9 1720 347 268 18 82 chr4 148836586 148836629 -6793491 + ID_B1 SINE B4 53 212 -12 9 1720 360 301 39 39 chr4 148836629 148836757 -6793363 + B1F SINE Alu 10 137 -12 9 1720 211 133 0 0 chr4 148836757 148836787 -6793333 + ID4_ SINE ID 16 45 -38 9 1720 260 288 0 29 chr4 148836902 148836970 -6793150 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 9 1720 254 316 19 35 chr4 148836970 148836994 -6793126 + ID4_ SINE ID 7 101 -51 9 1720 204 292 0 0 chr4 148836994 148837090 -6793030 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 1720 975 50 53 80 chr4 148837491 148837642 -6792478 + B1_Mus1 SINE Alu 2 148 0 9 1720 345 75 0 0 chr4 148837642 148837695 -6792425 + (A)n Simple_repeat Simple_repeat 1 53 0 9 1720 3146 66 0 12 chr4 148838214 148838615 -6791505 + MTA_Mm LTR MaLR 1 396 0 9 1720 505 218 59 22 chr4 148838625 148838761 -6791359 - ID_B1 SINE B4 0 224 84 9 1720 414 39 0 0 chr4 148840072 148840124 -6789996 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1720 230 326 34 0 chr4 148840139 148840155 -6789965 - B2_Mm1t SINE B2 -100 93 2 9 1720 318 301 0 0 chr4 148840155 148840228 -6789892 - RSINE1 SINE B4 -90 75 3 9 1720 1361 197 66 35 chr4 148840327 148840674 -6789446 + RMER6B LTR ERVK 3 360 -101 9 1720 359 291 3 59 chr4 148840704 148841062 -6789058 + GA-rich Low_complexity Low_complexity 1 338 0 9 1720 389 299 0 43 chr4 148841098 148841283 -6788837 + GA-rich Low_complexity Low_complexity 3 179 0 9 1720 1384 151 68 42 chr4 148841350 148841661 -6788459 + RMER6B LTR ERVK 143 461 0 9 1720 778 240 62 14 chr4 148841704 148841915 -6788205 - ID_B1 SINE B4 -1 223 3 9 1720 315 324 0 9 chr4 148842022 148842131 -6787989 - PB1 SINE Alu -19 108 1 9 1720 279 0 0 0 chr4 148842165 148842196 -6787924 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1720 843 229 12 0 chr4 148842204 148842370 -6787750 - B3 SINE B2 -48 168 1 9 1720 1643 42 0 0 chr4 148842386 148842578 -6787542 + B2_Mm1a SINE B2 1 192 -1 9 1720 1407 90 16 0 chr4 148843492 148843681 -6786439 + B2_Mm2 SINE B2 2 193 -2 9 1720 189 337 83 37 chr4 148844176 148844224 -6785896 - MIR SINE MIR -138 124 70 9 1720 212 0 36 0 chr4 148844224 148844252 -6785868 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1720 1146 72 0 0 chr4 148844252 148844390 -6785730 - B1_Mus1 SINE Alu -9 139 2 1 1720 189 337 83 37 chr4 148844390 148844448 -6785672 - MIR SINE MIR -193 69 13 9 1720 229 275 75 32 chr4 148845128 148845222 -6784898 - LTR83 LTR ERVL -112 668 571 1 1720 1369 86 16 0 chr4 148845381 148845568 -6784552 + B2_Mm1t SINE B2 4 193 0 1 1720 656 156 55 97 chr4 148845732 148845891 -6784229 + B2_Mm2 SINE B2 25 179 -37 1 1720 1109 102 7 0 chr4 148845891 148846038 -6784082 - B1_Mus1 SINE Alu 0 148 1 1 1720 656 58 0 148 chr4 148846038 148846060 -6784060 + B2_Mm2 SINE B2 170 190 -5 1 1720 1177 83 137 0 chr4 148846066 148846234 -6783886 + B2_Mm1a SINE B2 1 191 -2 1 1720 324 0 0 0 chr4 148846236 148846272 -6783848 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1720 1667 141 92 87 chr4 148846781 148847108 -6783012 + ORR1C2 LTR MaLR 1 313 -71 1 1720 1283 27 0 0 chr4 148847108 148847254 -6782866 - B1_Mm SINE Alu 0 147 2 1 1720 1667 141 92 87 chr4 148847254 148847307 -6782813 + ORR1C2 LTR MaLR 314 383 -1 1 1720 528 314 13 0 chr4 148847701 148847854 -6782266 + RSINE1 SINE B4 3 157 -8 1 1720 297 326 31 0 chr4 148847919 148848048 -6782072 - L1MB3 LINE L1 -53 6130 5998 1 1720 355 222 14 5 chr4 148848188 148848278 -6781842 - B1_Mur2 SINE Alu -32 117 29 1 1720 357 221 101 40 chr4 148848254 148848353 -6781767 - B1_Mur1 SINE Alu -43 106 2 1 1720 306 307 13 0 chr4 148848891 148848966 -6781154 + MLT1H LTR MaLR 133 208 -341 1 1720 789 79 159 38 chr4 148849018 148849150 -6780970 + B1_Mus1 SINE Alu 1 148 0 1 1720 292 273 65 0 chr4 148849607 148849684 -6780436 + ID2 SINE ID 2 83 0 1 1720 965 267 28 63 chr4 148849900 148850184 -6779936 + B4A SINE B4 15 288 -4 1 1720 441 182 0 127 chr4 148850319 148850445 -6779675 + MT2B LTR ERVL 155 264 -337 1 1720 881 54 0 0 chr4 148850333 148850445 -6779675 + B1_Mus1 SINE Alu 2 113 -35 1 1720 692 235 90 11 chr4 148850445 148850522 -6779598 + B4A SINE B4 87 290 -2 1 1720 347 169 84 26 chr4 148850867 148850968 -6779152 + PB1D7 SINE Alu 46 134 -13 1 1720 259 287 41 41 chr4 148852228 148852326 -6777794 + MIRm SINE MIR 56 153 -123 1 1720 266 295 0 0 chr4 148852328 148852389 -6777731 + B1F1 SINE Alu 3 63 -86 1 1720 180 0 0 0 chr4 148852389 148852409 -6777711 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1720 183 80 0 0 chr4 148852460 148852485 -6777635 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 1 1720 1246 61 0 0 chr4 148852487 148852634 -6777486 - B1_Mus2 SINE Alu 0 147 1 1 1720 296 300 12 0 chr4 148853976 148854056 -6776064 + ID4 SINE ID 3 83 0 1 1720 261 0 0 0 chr4 148854225 148854254 -6775866 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1720 335 165 92 50 chr4 148854254 148854325 -6775795 - B1_Mus2 SINE Alu -12 138 61 1 1720 318 252 28 66 chr4 148854298 148854404 -6775716 + PB1D7 SINE Alu 19 120 0 1 1720 576 42 0 0 chr4 148854418 148854489 -6775631 + (CGTG)n Simple_repeat Simple_repeat 1 71 0 1 1720 440 283 159 0 chr4 148854696 148854834 -6775286 - RSINE1 SINE B4 -4 161 2 1 1720 800 167 14 7 chr4 148854919 148855058 -6775062 - B1_Mur4 SINE Alu -10 140 1 1 1720 418 301 175 65 chr4 148855171 148855434 -6774686 + B4 SINE B4 1 292 0 1 1720 668 138 55 0 chr4 148855488 148855597 -6774523 - PB1D9 SINE Alu -2 118 4 1 1720 1150 115 69 0 chr4 148855661 148855835 -6774285 - B2_Mm2 SINE B2 -8 187 2 1 1720 451 223 91 103 chr4 148855883 148856048 -6774072 - RSINE1 SINE B4 0 165 3 1 1720 310 295 0 28 chr4 148856096 148856204 -6773916 + PB1D10 SINE Alu 12 116 -1 1 1720 398 254 113 16 chr4 148856189 148856313 -6773807 + B4 SINE B4 69 204 -88 1 1720 771 157 30 7 chr4 148856211 148856346 -6773774 + B1_Mur2 SINE Alu 12 149 0 1 1720 421 261 49 119 chr4 148856656 148856736 -6773384 + B4 SINE B4 8 217 -75 1 1720 530 180 34 123 chr4 148856736 148856882 -6773238 + B1_Mur4 SINE Alu 9 141 -9 1 1720 686 279 53 85 chr4 148856893 148857269 -6772851 + Lx8 LINE L1 7086 7449 -24 1 1720 718 193 153 22 chr4 148858028 148858259 -6771861 - MTD LTR MaLR -16 403 140 1 1720 370 195 0 72 chr4 148858192 148858275 -6771845 - B1_Mur4 SINE Alu -39 111 35 1 1720 655 111 28 9 chr4 148858296 148858405 -6771715 - B1_Mus2 SINE Alu -36 111 1 1 1720 1110 228 183 39 chr4 148858430 148858923 -6771197 - MTC-int LTR MaLR -5 1253 690 1 1720 264 148 0 0 chr4 148860251 148860312 -6769808 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1720 379 286 0 0 chr4 148860484 148860568 -6769552 + BC1_Mm scRNA scRNA 7 90 -62 1 1720 373 288 8 83 chr4 148860568 148860602 -6769518 + ID_B1 SINE B4 7 115 -109 1 1720 683 60 4 28 chr4 148860650 148860758 -6769362 - B1_Mus2 SINE Alu 0 150 54 1 1720 349 280 89 15 chr4 148861255 148861328 -6768792 + ID SINE ID 1 75 -149 1 1720 207 0 0 0 chr4 148861328 148861351 -6768769 + (GAA)n Simple_repeat Simple_repeat 1 23 0 1 1720 349 280 89 15 chr4 148861351 148861480 -6768640 + ID_B1 SINE B4 76 218 -6 1 1720 238 252 107 39 chr4 148861500 148861603 -6768517 + MIR SINE MIR 147 256 -6 1 1720 254 159 14 0 chr4 148862317 148862386 -6767734 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1720 423 253 0 0 chr4 148862435 148862518 -6767602 + ID4_ SINE ID 1 83 0 1 1720 23 0 0 0 chr4 148862518 148862541 -6767579 + AT_rich Low_complexity Low_complexity 1 23 0 1 1720 638 274 42 10 chr4 148863193 148863385 -6766735 - B3A SINE B2 0 198 1 1 1720 440 152 133 16 chr4 148863394 148863498 -6766622 - PB1D9 SINE Alu -21 128 24 1 1720 251 157 20 0 chr4 148863512 148863563 -6766557 + CT-rich Low_complexity Low_complexity 3 54 0 1 1720 473 188 29 29 chr4 148863816 148863920 -6766200 + B4A SINE B4 185 288 -4 1 1720 306 284 121 54 chr4 148863926 148864075 -6766045 + MIR SINE MIR 1 159 -109 1 1720 336 212 84 75 chr4 148864098 148864205 -6765915 + PB1D9 SINE Alu 5 112 -8 1 1720 379 225 0 0 chr4 148864368 148864439 -6765681 + ID4_ SINE ID 2 72 -11 1 1720 300 302 0 0 chr4 148864474 148864537 -6765583 + B1F SINE Alu 5 67 -82 1 1720 898 106 83 0 chr4 148864544 148864676 -6765444 + B1_Mus1 SINE Alu 6 148 0 1 1720 782 113 0 8 chr4 148864676 148864801 -6765319 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 1 1720 1685 26 0 0 chr4 148864974 148865166 -6764954 + B2_Mm1a SINE B2 2 193 0 1 1720 391 266 20 67 chr4 148865201 148865220 -6764900 - YREP_Mm Unknown Unknown -1485 327 186 1 1720 706 223 14 35 chr4 148865220 148865350 -6764770 + ID_B1 SINE B4 84 215 -9 1 1720 804 250 59 0 chr4 148865350 148865554 -6764566 + B3 SINE B2 1 216 0 1 1720 706 223 14 35 chr4 148865554 148865567 -6764553 + ID_B1 SINE B4 216 224 0 1 1720 737 224 25 25 chr4 148865575 148865735 -6764385 + RSINE1 SINE B4 4 163 -2 1 1720 308 265 19 67 chr4 148865923 148866028 -6764092 + RSINE1 SINE B4 64 163 -2 1 1720 1219 61 0 0 chr4 148866072 148866219 -6763901 + B1_Mus2 SINE Alu 1 147 0 1 1720 183 42 0 0 chr4 148866220 148866244 -6763876 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1720 383 269 106 0 chr4 148866255 148866359 -6763761 + PB1D7 SINE Alu 6 120 0 1 1720 442 292 29 160 chr4 148866381 148866438 -6763682 + RSINE1 SINE B4 4 51 -114 1 1720 1461 69 5 5 chr4 148866438 148866627 -6763493 - B2_Mm2 SINE B2 -6 189 1 1 1720 442 292 29 160 chr4 148866627 148866744 -6763376 + RSINE1 SINE B4 52 155 -10 1 1720 564 216 34 67 chr4 148866784 148866933 -6763187 + B1_Mus1 SINE Alu 2 145 -3 1 1720 1207 62 0 0 chr4 148866956 148867101 -6763019 + B1_Mus1 SINE Alu 1 145 -3 1 1720 218 32 32 0 chr4 148867101 148867132 -6762988 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1720 973 217 14 41 chr4 148867523 148867744 -6762376 - B3 SINE B2 0 216 2 1 1720 529 178 103 0 chr4 148868011 148868142 -6761978 - B1_Mur4 SINE Alu 0 148 1 1 1720 812 273 48 10 chr4 148868373 148868580 -6761540 - B3 SINE B2 0 216 2 1 1720 321 303 26 84 chr4 148868633 148868672 -6761448 - B2_Mm2 SINE B2 -15 180 143 1 1720 234 0 0 0 chr4 148868672 148868698 -6761422 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1720 321 303 26 84 chr4 148868698 148868849 -6761271 - B2_Mm2 SINE B2 -53 142 2 1 1720 723 230 124 22 chr4 148869017 148869195 -6760925 + B3 SINE B2 3 198 -18 1 1720 287 245 207 9 chr4 148869274 148869385 -6760735 - RSINE1 SINE B4 -17 148 16 1 1720 296 256 38 13 chr4 148869408 148869487 -6760633 - PB1 SINE Alu -23 104 24 1 1720 418 282 108 36 chr4 148869509 148869538 -6760582 - B3 SINE B2 -6 210 185 1 1720 1418 60 0 16 chr4 148869538 148869697 -6760423 + B2_Mm1a SINE B2 2 160 -33 1 1720 324 0 0 0 chr4 148869697 148869733 -6760387 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1720 1418 60 0 16 chr4 148869733 148869758 -6760362 + B2_Mm1a SINE B2 161 182 -11 1 1720 418 282 108 36 chr4 148869758 148869923 -6760197 - B3 SINE B2 -32 184 2 1 1720 336 303 137 14 chr4 148870584 148870731 -6759389 - MIR3 SINE MIR -92 184 15 1 1720 23 0 0 0 chr4 148870738 148870761 -6759359 + AT_rich Low_complexity Low_complexity 1 23 0 1 1720 324 0 0 0 chr4 148871138 148871174 -6758946 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1720 1095 94 0 0 chr4 148871174 148871353 -6758767 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1720 351 0 0 0 chr4 148871377 148871416 -6758704 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1720 691 292 12 0 chr4 148871640 148871801 -6758319 + RSINE1 SINE B4 3 165 0 1 1720 553 270 101 78 chr4 148872160 148872446 -6757674 - L1MB5 LINE L1 -159 6015 5704 1 1720 1233 61 0 0 chr4 148872446 148872594 -6757526 + B1_Mus1 SINE Alu 1 148 0 1 1720 553 270 101 78 chr4 148872594 148872693 -6757427 - L1MB5 LINE L1 -471 5703 5621 1 1720 241 254 104 0 chr4 148872891 148872903 -6757217 + B4A SINE B4 70 88 -204 1 1720 262 262 50 0 chr4 148872903 148872983 -6757137 + PB1D10 SINE Alu 2 85 -32 1 1720 839 129 34 0 chr4 148872961 148873108 -6757012 - BC1_Mm scRNA scRNA 0 152 1 1 1720 233 222 19 0 chr4 148873068 148873122 -6756998 - ZP3AR Satellite Satellite -130 82 28 1 1720 292 230 87 39 chr4 148873590 148873694 -6756426 + PB1D10 SINE Alu 1 109 -8 1 1720 376 321 98 8 chr4 148874442 148874574 -6755546 + B3 SINE B2 46 189 -27 1 1720 252 0 0 0 chr4 148875190 148875218 -6754902 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1720 414 0 0 0 chr4 148875369 148875415 -6754705 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1720 557 290 83 38 chr4 148875437 148875677 -6754443 - B4 SINE B4 -34 258 8 1 1720 322 269 25 10 chr4 148875847 148875959 -6754161 - B1F SINE Alu 0 149 10 1 1720 1236 125 6 0 chr4 148876032 148876046 -6754074 - B2_Mm2 SINE B2 -18 177 164 1 1720 369 0 0 0 chr4 148876046 148876087 -6754033 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1720 1236 125 6 0 chr4 148876087 148876248 -6753872 - B2_Mm2 SINE B2 -32 163 2 1 1720 1464 57 6 0 chr4 148876292 148876469 -6753651 - B2_Mm1t SINE B2 -14 179 2 1 1720 810 180 0 0 chr4 148876481 148876609 -6753511 + RSINE1 SINE B4 3 130 -35 1 1720 305 188 42 3 chr4 148876639 148876704 -6753416 + B1_Mus1 SINE Alu 3 70 -47 1 1720 572 183 122 24 chr4 148876872 148876995 -6753125 - B1_Mur2 SINE Alu 0 149 15 1 1720 955 228 20 25 chr4 148877243 148877441 -6752679 + B3A SINE B2 2 198 0 1 1720 466 268 82 34 chr4 148877585 148877734 -6752386 + RSINE1 SINE B4 6 162 -3 1 1720 807 251 37 9 chr4 148877839 148878056 -6752064 + ID_B1 SINE B4 2 224 0 1 1720 1234 41 0 7 chr4 148878168 148878316 -6751804 + B1_Mus2 SINE Alu 1 147 0 1 1720 1410 76 54 0 chr4 148878389 148878574 -6751546 + B2_Mm2 SINE B2 1 195 0 1 1720 575 254 36 14 chr4 148878684 148878824 -6751296 + B1_Mur1 SINE Alu 1 143 -6 1 1720 318 206 124 52 chr4 148878856 148878953 -6751167 + RSINE1 SINE B4 2 105 -60 1 1720 321 26 0 0 chr4 148879352 148879390 -6750730 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1720 1234 34 7 0 chr4 148879910 148880056 -6750064 + B1_Mm SINE Alu 1 147 0 1 1720 198 0 0 0 chr4 148880056 148880078 -6750042 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1720 355 228 87 29 chr4 148880080 148880184 -6749936 + PB1D9 SINE Alu 3 112 -8 1 1720 843 212 89 20 chr4 148880195 148880397 -6749723 + B3 SINE B2 1 216 0 1 1720 544 196 14 101 chr4 148880449 148880637 -6749483 + ID_B1 SINE B4 72 215 -9 1 1720 497 226 60 66 chr4 148880658 148880824 -6749296 - RSINE1 SINE B4 0 165 1 1 1720 1000 122 69 43 chr4 148880859 148881047 -6749073 + B2_Mm2 SINE B2 2 194 -1 1 1720 654 49 0 0 chr4 148881421 148881503 -6748617 + (GGAAA)n Simple_repeat Simple_repeat 5 86 0 1 1720 1133 211 50 135 chr4 148881560 148881600 -6748520 - ORR1D1 LTR MaLR -4 370 332 1 1720 959 116 7 27 chr4 148881600 148881750 -6748370 + B1_Mus1 SINE Alu 1 147 -1 1 1720 1133 211 50 135 chr4 148881750 148881908 -6748212 - ORR1D1 LTR MaLR -43 331 211 1 1720 811 254 38 47 chr4 148881908 148882119 -6748001 - B3 SINE B2 -6 210 2 1 1720 1133 211 50 135 chr4 148882119 148882319 -6747801 - ORR1D1 LTR MaLR -164 210 5 1 1720 250 292 14 14 chr4 148882384 148882457 -6747663 - tRNA-Ala-GCY_ tRNA tRNA -1 74 2 1 1720 189 374 84 63 chr4 148882483 148882520 -6747600 + L2 LINE L2 2812 2848 -571 1 1720 1445 192 192 0 chr4 148882520 148882832 -6747288 - ORR1D1 LTR MaLR 0 374 3 1 1720 189 374 84 63 chr4 148882832 148882985 -6747135 + L2 LINE L2 2849 3006 -413 1 1720 956 166 0 0 chr4 148883125 148883270 -6746850 + B1_Mus2 SINE Alu 1 145 -2 1 1720 1483 51 17 0 chr4 148883298 148883475 -6746645 - B2_Mm2 SINE B2 -14 181 2 1 1720 390 204 33 22 chr4 148883532 148883622 -6746498 - ID_B1 SINE B4 -4 220 130 1 1720 338 234 78 70 chr4 148883622 148883642 -6746478 - B1F SINE Alu -1 143 33 1 1720 274 247 41 0 chr4 148884202 148884275 -6745845 + PB1D7 SINE Alu 1 76 -44 1 1720 623 284 59 25 chr4 148884343 148884545 -6745575 + B4A SINE B4 2 210 -82 1 1720 1590 57 0 0 chr4 148884547 148884739 -6745381 - B2_Mm1a SINE B2 0 193 2 1 1720 1291 34 0 0 chr4 148884742 148884889 -6745231 - B1_Mus2 SINE Alu 0 147 1 1 1720 414 315 105 49 chr4 148886722 148886969 -6743151 - B4 SINE B4 -31 261 1 1 1720 421 299 36 67 chr4 148886982 148887147 -6742973 - RSINE1 SINE B4 0 165 6 1 1720 622 181 46 86 chr4 148887151 148887302 -6742818 - B1F SINE Alu 0 149 5 1 1720 794 207 6 0 chr4 148887382 148887561 -6742559 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1720 207 182 0 0 chr4 148887561 148887594 -6742526 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 1 1720 676 207 0 0 chr4 148887618 148887729 -6742391 - B1_Mur3 SINE Alu -6 143 33 1 1720 1315 98 16 21 chr4 148887796 148887983 -6742137 - B2_Mm2 SINE B2 -8 187 2 1 1720 266 253 40 0 chr4 148888017 148888092 -6742028 - ID4 SINE ID -3 80 3 1 1720 1043 263 110 7 chr4 148888120 148888411 -6741709 - MTEb LTR MaLR -57 322 2 1 1720 894 203 59 0 chr4 148888688 148888875 -6741245 + B3 SINE B2 6 203 -13 1 1720 241 302 0 0 chr4 148888877 148888973 -6741147 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 1 1720 970 99 13 47 chr4 148889434 148889583 -6740537 + B1_Mus1 SINE Alu 1 144 -4 1 1720 829 261 115 42 chr4 148889788 148890100 -6740020 + Lx8 LINE L1 6198 6532 -941 1 1720 753 166 74 26 chr4 148890100 148890289 -6739831 + B3 SINE B2 1 195 0 1 1720 215 73 0 47 chr4 148890344 148890387 -6739733 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1720 1729 239 104 57 chr4 148890483 148891032 -6739088 + RMER15 LTR ERVL 1 575 0 1 1720 1202 62 0 7 chr4 148891046 148891193 -6738927 + B1_Mus2 SINE Alu 1 146 -1 1 1720 242 68 45 0 chr4 148891193 148891237 -6738883 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 1 1720 548 192 30 0 chr4 148891292 148891391 -6738729 - U6 snRNA snRNA -5 102 1 1 1720 537 236 71 22 chr4 148891485 148891667 -6738453 + B3A SINE B2 8 198 0 1 1720 21 36 0 0 chr4 148892245 148892273 -6737847 + GC_rich Low_complexity Low_complexity 1 28 0 1 1720 206 236 0 0 chr4 148892363 148892418 -6737702 + (CTG)n Simple_repeat Simple_repeat 1 55 0 1 1720 21 71 0 0 chr4 148892520 148892562 -6737558 + GC_rich Low_complexity Low_complexity 1 42 0 1 1720 182 172 69 111 chr4 148893334 148893406 -6736714 + L3 LINE CR1 3 71 -4418 1 1720 909 142 0 0 chr4 148894044 148894185 -6735935 + B1_Mur3 SINE Alu 9 149 0 1 1720 227 238 175 0 chr4 148894759 148894822 -6735298 + ID4 SINE ID 1 74 -9 1 1720 690 129 8 75 chr4 148894860 148894994 -6735126 + B1_Mur1 SINE Alu 25 149 0 1 1720 438 283 171 24 chr4 148895610 148895820 -6734300 + MIRb SINE MIR 27 267 -1 1 1720 652 294 49 32 chr4 148895839 148896123 -6733997 + B4A SINE B4 2 290 -2 1 1720 473 218 18 26 chr4 148896228 148896341 -6733779 - RSINE1 SINE B4 -51 114 3 1 1720 201 343 45 0 chr4 148896373 148896440 -6733680 + L2a LINE L2 3289 3358 -68 1 1720 666 203 54 8 chr4 148896478 148896607 -6733513 + B1_Mur1 SINE Alu 1 135 -14 1 1720 276 30 0 0 chr4 148896607 148896640 -6733480 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 1 1720 186 43 0 0 chr4 148897541 148897564 -6732556 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1720 391 247 13 0 chr4 148897564 148897641 -6732479 - ID4 SINE ID -4 79 2 1 1721 246 364 68 42 chr4 148898143 148898335 -6731785 - MIRb SINE MIR -1 267 71 1 1721 954 31 8 37 chr4 148898668 148898802 -6731318 - B1_Mus1 SINE Alu 0 148 19 1 1721 180 0 0 0 chr4 148898802 148898822 -6731298 + (CCA)n Simple_repeat Simple_repeat 1 20 0 1 1721 516 265 29 0 chr4 148899384 148899520 -6730600 + ID_B1 SINE B4 84 223 -1 1 1721 211 125 62 0 chr4 148899601 148899649 -6730471 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1721 183 42 0 0 chr4 148899658 148899682 -6730438 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1 1721 872 164 15 0 chr4 148899682 148899816 -6730304 - B1F2 SINE Alu -12 137 2 1 1721 226 345 125 14 chr4 148900677 148900821 -6729299 + MLT1E2 LTR MaLR 399 558 -69 1 1721 852 197 78 34 chr4 148901538 148901753 -6728367 - B3 SINE B2 -5 211 10 1 1721 489 76 0 0 chr4 148903277 148903343 -6726777 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 1 1721 987 166 12 0 chr4 148903347 148903510 -6726610 - B3 SINE B2 -38 178 14 1 1721 217 301 13 40 chr4 148904615 148904691 -6725429 + B4A SINE B4 73 146 -146 1 1721 490 279 19 16 chr4 148904637 148904774 -6725346 + PB1 SINE Alu 9 142 -7 1 1721 365 230 86 48 chr4 148904782 148904887 -6725233 + PB1D7 SINE Alu 7 115 -5 1 1721 444 262 127 33 chr4 148904891 148905041 -6725079 + RSINE1 SINE B4 2 165 0 1 1721 873 172 0 0 chr4 148905056 148905190 -6724930 + B1_Mus2 SINE Alu 5 138 -9 1 1721 26 0 0 0 chr4 148905232 148905258 -6724862 + AT_rich Low_complexity Low_complexity 1 26 0 1 1721 316 203 0 15 chr4 148905311 148905376 -6724744 + ID_B1 SINE B4 161 224 0 1 1721 551 171 19 0 chr4 148905383 148905488 -6724632 + B1_Mur2 SINE Alu 42 148 -1 1 1721 1308 108 5 26 chr4 148905491 148905682 -6724438 + B2_Mm2 SINE B2 1 187 -8 1 1721 650 207 105 84 chr4 148905683 148905862 -6724258 + B3 SINE B2 1 185 -10 1 1721 1289 21 0 0 chr4 148905862 148906006 -6724114 + B1_Mm SINE Alu 2 145 -2 1 1721 238 235 109 30 chr4 148906264 148906365 -6723755 - L2c LINE L2 -273 3114 3006 1 1721 399 284 11 0 chr4 148906446 148906541 -6723579 - MER2 DNA MER2_type -35 310 215 1 1721 232 250 29 29 chr4 148906546 148906616 -6723504 - ID_B1 SINE B4 -9 215 146 1 1721 233 342 95 7 chr4 148906766 148906913 -6723207 - MER2 DNA MER2_type -148 197 38 1 1721 589 136 254 0 chr4 148906942 148907052 -6723068 + B1_Mur3 SINE Alu 3 140 -9 1 1721 201 74 0 0 chr4 148907052 148907079 -6723041 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1721 632 284 51 0 chr4 148907092 148907268 -6722852 + B3A SINE B2 14 198 0 1 1721 925 176 46 41 chr4 148907283 148907479 -6722641 + B3A SINE B2 1 197 -1 1 1721 256 225 360 0 chr4 148907520 148907595 -6722525 + PB1D9 SINE Alu 7 107 -13 1 1721 387 0 0 0 chr4 148907597 148907640 -6722480 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1721 380 206 71 10 chr4 148908566 148908664 -6721456 - RSINE1 SINE B4 -27 138 35 1 1721 225 0 0 0 chr4 148908750 148908775 -6721345 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1721 273 224 0 0 chr4 148908870 148908919 -6721201 - B4A SINE B4 -58 234 186 1 1721 498 232 256 0 chr4 148909137 148909305 -6720815 + B3 SINE B2 2 212 -4 1 1721 565 272 23 23 chr4 148909474 148909647 -6720473 + MIRb SINE MIR 61 233 -35 1 1721 228 267 107 0 chr4 148910442 148910517 -6719603 + MT2B2 LTR ERVL 210 292 -292 1 1721 244 261 17 0 chr4 148910470 148910482 -6719638 + ORR1B1-int LTR MaLR 634 647 -862 1 1721 906 87 0 0 chr4 148910482 148910608 -6719512 + B1_Mm SINE Alu 1 126 -21 1 1721 522 240 103 11 chr4 148910769 148910923 -6719197 - ID_B1 SINE B4 -69 223 64 1 1721 264 265 30 49 chr4 148912095 148912253 -6717867 - MIR SINE MIR -94 182 26 1 1721 787 302 10 63 chr4 148912754 148913054 -6717066 + B4A SINE B4 1 284 -8 1 1721 345 82 0 0 chr4 148913100 148913149 -6716971 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 1 1721 182 62 0 30 chr4 148914192 148914225 -6715895 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1721 324 212 0 111 chr4 148914416 148914506 -6715614 - ID4 SINE ID -2 81 2 1 1721 349 226 6 6 chr4 148914521 148914699 -6715421 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1721 568 231 52 7 chr4 148914727 148914862 -6715258 - ID_B1 SINE B4 0 224 84 1 1721 1201 61 0 7 chr4 148914983 148915131 -6714989 + B1_Mus2 SINE Alu 1 147 0 1 1721 929 181 0 0 chr4 148915157 148915306 -6714814 + B1_Mur2 SINE Alu 1 149 0 1 1721 340 337 0 10 chr4 148915320 148915422 -6714698 - B1F1 SINE Alu -7 142 42 1 1721 439 285 34 27 chr4 148915432 148915580 -6714540 - B1F2 SINE Alu 0 149 1 1 1721 267 174 27 80 chr4 148916927 148917002 -6713118 + RSINE1 SINE B4 89 159 -6 1 1721 1036 75 7 0 chr4 148917604 148917750 -6712370 - B1_Mus2 SINE Alu 0 147 1 1 1721 1622 26 0 45 chr4 148918405 148918606 -6711514 - B2_Mm1a SINE B2 0 193 2 1 1721 579 127 254 0 chr4 148921371 148921489 -6708631 + B1_Mus1 SINE Alu 1 148 0 1 1721 183 80 0 0 chr4 148921540 148921565 -6708555 + (CAGAG)n Simple_repeat Simple_repeat 1 25 0 1 1721 219 288 14 14 chr4 148922129 148922203 -6707917 - ID2 SINE ID -1 82 9 1 1721 528 16 0 0 chr4 148922279 148922340 -6707780 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1721 308 266 0 0 chr4 148922379 148922443 -6707677 - ID4_ SINE ID -17 66 3 1 1721 756 246 47 21 chr4 148922461 148922652 -6707468 + B3A SINE B2 2 197 -1 1 1721 186 43 0 0 chr4 148922765 148922788 -6707332 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1721 619 273 95 10 chr4 148922868 148923068 -6707052 + ID_B1 SINE B4 3 219 -5 1 1721 942 231 32 55 chr4 148924342 148924488 -6705632 - B3 SINE B2 0 216 75 1 1721 224 100 25 0 chr4 148924488 148924528 -6705592 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1721 942 231 32 55 chr4 148924528 148924601 -6705519 - B3 SINE B2 -142 74 2 1 1721 600 208 107 107 chr4 148924636 148924851 -6705269 - B3 SINE B2 -1 215 1 1 1721 936 92 75 15 chr4 148924899 148925032 -6705088 - B1_Mus2 SINE Alu -2 145 5 1 1721 184 364 23 0 chr4 148926036 148926124 -6703996 - MIRb SINE MIR -14 254 165 1 1721 490 317 42 0 chr4 148926608 148926750 -6703370 - RSINE1 SINE B4 -16 149 2 1 1721 643 244 97 60 chr4 148926781 148927004 -6703116 - B3A SINE B2 0 216 1 1 1721 1115 208 29 0 chr4 148927034 148927241 -6702879 - B3 SINE B2 -3 213 1 1 1721 337 270 150 0 chr4 148927287 148927387 -6702733 - PB1D10 SINE Alu 0 117 3 1 1721 180 356 56 0 chr4 148928724 148928814 -6701306 + MER5A DNA MER1_type 47 141 -48 1 1721 267 341 12 0 chr4 148928975 148929060 -6701060 + AluG_3 SINE Alu 137 222 -89 1 1721 207 0 0 0 chr4 148929109 148929132 -6700988 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1721 234 0 0 0 chr4 148929256 148929282 -6700838 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 1 1721 550 290 88 86 chr4 148929288 148929650 -6700470 - MTD LTR MaLR -39 380 18 1 1721 657 203 0 0 chr4 148929780 148929957 -6700163 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1721 244 305 38 50 chr4 148930039 148930198 -6699922 - MIRc SINE MIR -68 200 44 1 1721 253 288 0 0 chr4 148931033 148931099 -6699021 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1 1721 705 294 21 11 chr4 148931099 148931288 -6698832 - B3 SINE B2 -13 203 13 1 1721 792 284 41 14 chr4 148931365 148931586 -6698534 - B4A SINE B4 -58 234 8 1 1721 474 18 0 0 chr4 148932350 148932405 -6697715 + (TGG)n Simple_repeat Simple_repeat 3 57 0 1 1721 729 279 21 5 chr4 148932682 148932873 -6697247 + ID_B1 SINE B4 6 199 -25 1 1721 466 168 137 0 chr4 148933149 148933244 -6696876 + PB1D10 SINE Alu 5 112 -5 1 1721 1375 86 32 16 chr4 148933344 148933533 -6696587 + B2_Mm2 SINE B2 2 193 -2 1 1721 269 222 99 0 chr4 148933595 148933676 -6696444 + MT2B LTR ERVL 153 241 -360 1 1721 375 176 188 0 chr4 148933616 148933701 -6696419 + PB1D9 SINE Alu 11 111 -9 1 1721 204 40 0 0 chr4 148933701 148933726 -6696394 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1721 500 73 7 197 chr4 148933729 148933866 -6696254 + RSINE1 SINE B4 55 165 0 1 1721 1044 311 115 35 chr4 148933891 148934554 -6695566 - L1M4 LINE L1 -1719 4427 3712 1 1721 390 185 0 0 chr4 148934564 148934645 -6695475 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1721 3821 30 7 0 chr4 148934651 148935084 -6695036 - RLTR10C LTR ERVK 0 436 1 1 1721 255 242 136 0 chr4 148935490 148935556 -6694564 + RMER16-int LTR ERVK 350 424 -4982 1 1721 2302 151 14 21 chr4 148935778 148936199 -6693921 - MTC LTR MaLR -3 418 1 1 1721 567 276 0 22 chr4 148937426 148937563 -6692557 + RSINE1 SINE B4 3 136 -29 1 1721 345 241 58 3 chr4 148937605 148937762 -6692358 - B3 SINE B2 -9 186 11 1 1721 368 193 84 0 chr4 148938008 148938091 -6692029 - ID_B1 SINE B4 -4 220 131 1 1721 254 289 54 32 chr4 148938019 148938112 -6692008 - B1F1 SINE Alu -23 126 32 1 1721 274 277 0 15 chr4 148938110 148938176 -6691944 - tRNA-Ala-GCA tRNA tRNA -9 66 2 1 1721 723 201 174 5 chr4 148940655 148940845 -6689275 + ID_B1 SINE B4 2 223 -1 1 1721 444 312 88 0 chr4 148940864 148940989 -6689131 + ID_B1 SINE B4 81 216 -8 1 1721 1467 69 0 11 chr4 148940998 148941188 -6688932 + B2_Mm2 SINE B2 1 188 -7 1 1721 856 143 0 0 chr4 148941205 148941338 -6688782 + B1_Mur2 SINE Alu 11 143 -6 1 1721 1245 34 0 20 chr4 148941347 148941496 -6688624 + B1_Mm SINE Alu 2 147 0 1 1721 1008 181 118 10 chr4 148942411 148942606 -6687514 + B3 SINE B2 1 216 0 1 1721 587 200 36 0 chr4 148942606 148942716 -6687404 - ID_B1 SINE B4 -15 209 96 1 1721 308 236 41 14 chr4 148942724 148942797 -6687323 - ID4_ SINE ID -6 77 3 1 1721 405 289 135 86 chr4 148943157 148943505 -6686615 + MLT1A0 LTR MaLR 1 365 0 1 1721 237 132 0 0 chr4 148944485 148944523 -6685597 + (GGA)n Simple_repeat Simple_repeat 3 40 0 1 1721 192 353 15 0 chr4 148944693 148944761 -6685359 + MIR SINE MIR 110 178 -84 1 1721 1370 94 10 5 chr4 148944885 148945078 -6685042 + B2_Mm2 SINE B2 2 195 0 1 1721 216 0 0 0 chr4 148946575 148946599 -6683521 + (C)n Simple_repeat Simple_repeat 1 24 0 1 1721 289 270 118 73 chr4 148946977 148947113 -6683007 + MLT1I LTR MaLR 47 188 -223 1 1721 261 0 0 0 chr4 148947587 148947616 -6682504 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1721 550 295 119 12 chr4 148947662 148947830 -6682290 + ID_B1 SINE B4 2 187 -37 1 1721 792 181 0 28 chr4 148947807 148947949 -6682171 + B1_Mur3 SINE Alu 12 149 0 1 1721 445 195 26 0 chr4 148947936 148948013 -6682107 + ID_B1 SINE B4 134 212 -12 1 1721 239 0 0 31 chr4 148948190 148948222 -6681898 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1721 768 117 27 0 chr4 148948228 148948339 -6681781 - B1_Mur3 SINE Alu -31 118 5 1 1721 230 191 174 87 chr4 148948240 148948355 -6681765 - RLTR25B LTR ERVK -519 509 385 1 1721 325 287 71 39 chr4 148948755 148948882 -6681238 - MLT1B LTR MaLR -275 320 190 1 1721 1145 229 110 0 chr4 148949121 148949431 -6680689 + Lx8 LINE L1 6772 7115 -358 1 1721 236 231 132 26 chr4 148949463 148949614 -6680506 + Lx8 LINE L1 7305 7471 -2 1 1721 492 274 44 0 chr4 148949815 148949928 -6680192 - ID_B1 SINE B4 -28 196 79 1 1721 282 177 42 0 chr4 148949971 148950040 -6680080 - PB1 SINE Alu -8 141 65 1 1721 473 250 111 37 chr4 148950034 148950196 -6679924 - MLT1B LTR MaLR -213 177 4 1 1721 665 228 7 33 chr4 148951996 148952146 -6677974 - B1_Mur1 SINE Alu -1 148 3 1 1721 440 271 9 0 chr4 148952175 148952282 -6677838 + PB1D10 SINE Alu 1 108 -9 1 1721 378 293 0 0 chr4 148952954 148953073 -6677047 + MIRc SINE MIR 78 196 -66 1 1721 252 178 22 34 chr4 148953340 148953406 -6676714 + RSINE1 SINE B4 1 67 -225 1 1721 402 308 43 65 chr4 148953663 148953802 -6676318 + ID_B1 SINE B4 77 212 -12 1 1721 183 80 0 0 chr4 148953802 148953827 -6676293 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1721 422 239 0 50 chr4 148953840 148953959 -6676161 - RMER12 LTR ERVK -462 860 748 1 1721 227 258 106 0 chr4 148953972 148954038 -6676082 + MT2B2 LTR ERVL 166 238 -346 1 1721 417 254 182 0 chr4 148953981 148954091 -6676029 + ID_B1 SINE B4 92 221 -3 1 1721 243 79 0 0 chr4 148954091 148954129 -6675991 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1721 735 120 10 27 chr4 148954136 148954267 -6675853 + B1_Mur3 SINE Alu 3 138 -12 1 1721 198 0 0 0 chr4 148954267 148954289 -6675831 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1 1721 240 111 0 0 chr4 148954649 148954685 -6675435 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1 1721 303 242 0 42 chr4 148954749 148954844 -6675276 + L1MC4a LINE L1 5860 5950 -1932 1 1721 201 74 0 0 chr4 148954869 148954896 -6675224 + (CG)n Simple_repeat Simple_repeat 1 27 0 1 1721 219 69 0 0 chr4 148954896 148954924 -6675196 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1721 428 252 8 42 chr4 148954925 148955045 -6675075 + ID_B1 SINE B4 108 223 -1 1 1721 932 114 8 0 chr4 148955184 148955315 -6674805 + B1_Mus2 SINE Alu 9 140 -7 1 1721 233 329 40 0 chr4 148955454 148955530 -6674590 + ID4_ SINE ID 5 83 0 1 1721 538 239 146 36 chr4 148955617 148955782 -6674338 + B3A SINE B2 1 183 -15 1 1721 477 50 0 0 chr4 148956341 148956401 -6673719 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 1 1721 479 195 215 25 chr4 148956431 148956552 -6673568 - B1_Mur2 SINE Alu 0 149 6 1 1721 251 267 26 26 chr4 148956483 148956560 -6673560 - MT2B2 LTR ERVL -347 237 161 1 1721 1348 50 71 22 chr4 148956569 148956753 -6673367 - B2_Mm2 SINE B2 -1 194 2 1 1721 555 78 0 0 chr4 148956797 148956874 -6673246 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1721 810 31 0 0 chr4 148957703 148957800 -6672320 + (TTC)n Simple_repeat Simple_repeat 2 98 0 1 1721 228 288 14 57 chr4 148957857 148957927 -6672193 - MIRm SINE MIR 0 276 210 1 1721 225 0 0 0 chr4 148957997 148958022 -6672098 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 1721 1031 194 29 38 chr4 148958025 148958234 -6671886 + B3 SINE B2 9 215 -1 1 1721 23 33 0 0 chr4 148958234 148958264 -6671856 + AT_rich Low_complexity Low_complexity 1 30 0 1 1721 318 67 0 0 chr4 148958273 148958318 -6671802 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1721 572 226 28 70 chr4 148958321 148958464 -6671656 - RSINE1 SINE B4 -25 140 4 1 1721 880 231 72 0 chr4 148958486 148958694 -6671426 - ID_B1 SINE B4 -1 223 1 1 1721 190 280 89 48 chr4 148958764 148958888 -6671232 - MIRc SINE MIR -123 145 17 1 1721 240 59 0 0 chr4 148959803 148959837 -6670283 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1721 30 27 0 0 chr4 148960513 148960550 -6669570 + GC_rich Low_complexity Low_complexity 1 37 0 1 1721 226 250 22 36 chr4 148960680 148960817 -6669303 + (CCGCG)n Simple_repeat Simple_repeat 4 138 0 1 1721 218 203 68 0 chr4 148963264 148963323 -6666797 - ID4_ SINE ID -9 74 12 1 1721 355 196 141 84 chr4 148963511 148963653 -6666467 - B1F2 SINE Alu 0 149 1 1 1721 369 0 0 0 chr4 148963895 148963936 -6666184 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1 1721 786 168 21 21 chr4 148963936 148964076 -6666044 - B1_Mur4 SINE Alu -9 141 2 1 1721 236 53 0 26 chr4 148964141 148964180 -6665940 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1721 267 231 61 15 chr4 148964287 148964353 -6665767 - ID4_ SINE ID -14 69 1 1 1721 1008 125 137 0 chr4 148964455 148964623 -6665497 - B2_Mm2 SINE B2 -4 191 1 1 1721 27 29 0 0 chr4 148964623 148964657 -6665463 + AT_rich Low_complexity Low_complexity 1 34 0 1 1721 601 189 10 0 chr4 148964803 148964920 -6665200 - B3 SINE B2 -71 124 2 1 1721 752 151 143 0 chr4 148964926 148965052 -6665068 - B1_Mur4 SINE Alu -5 145 2 1 1721 416 298 19 0 chr4 148965303 148965407 -6664713 + ID_B1 SINE B4 118 223 -1 1 1721 501 281 80 15 chr4 148965498 148965635 -6664485 + RSINE1 SINE B4 3 148 -17 1 1721 643 233 86 13 chr4 148965733 148965885 -6664235 + B3 SINE B2 54 216 0 1 1721 512 244 88 66 chr4 148965906 148966042 -6664078 + B1F1 SINE Alu 1 139 -11 1 1721 294 283 0 13 chr4 148966911 148966986 -6663134 - ID4 SINE ID -9 74 1 1 1721 364 253 90 7 chr4 148967029 148967184 -6662936 - L1M4 LINE L1 -410 5774 5607 1 1721 186 43 0 0 chr4 148967184 148967207 -6662913 + (TCC)n Simple_repeat Simple_repeat 2 24 0 1 1721 287 146 0 18 chr4 148967233 148967289 -6662831 + CT-rich Low_complexity Low_complexity 2 56 0 1 1721 809 136 17 22 chr4 148967350 148967531 -6662589 + CT-rich Low_complexity Low_complexity 1 180 0 1 1721 228 45 91 0 chr4 148967532 148967576 -6662544 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 1 1721 189 0 0 0 chr4 148967873 148967894 -6662226 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1721 753 88 53 9 chr4 148968444 148968558 -6661562 - PB1D9 SINE Alu 0 120 2 1 1721 189 0 0 0 chr4 148968559 148968580 -6661540 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1721 472 246 33 17 chr4 148968660 148968780 -6661340 - ID_B1 SINE B4 -43 181 60 1 1721 450 0 0 0 chr4 148968781 148968831 -6661289 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1721 289 308 58 51 chr4 148968913 148969050 -6661070 - B1F SINE Alu -11 138 1 1 1721 3203 50 10 2 chr4 148969622 148970019 -6660101 + MTB LTR MaLR 1 400 0 1 1721 209 122 24 0 chr4 148970049 148970090 -6660030 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1 1721 829 226 22 11 chr4 148970193 148970376 -6659744 + B3A SINE B2 3 187 -11 1 1721 676 165 281 0 chr4 148970521 148970685 -6659435 + B3 SINE B2 1 210 -6 1 1721 417 242 114 23 chr4 148970727 148970858 -6659262 + RSINE1 SINE B4 3 145 -20 1 1721 1236 48 0 0 chr4 148970898 148971045 -6659075 + B1_Mus2 SINE Alu 1 147 0 1 1721 210 143 0 0 chr4 148971045 148971080 -6659040 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1721 812 230 84 16 chr4 148971421 148971611 -6658509 + B3 SINE B2 11 213 -3 1 1721 620 164 36 0 chr4 148972337 148972447 -6657673 - PB1D9 SINE Alu 0 120 7 1 1721 499 295 0 9 chr4 148972466 148972572 -6657548 - PB1 SINE Alu -2 125 21 1 1721 1330 97 0 6 chr4 148972599 148972776 -6657344 + B2_Mm2 SINE B2 2 177 -18 1 1721 357 82 0 0 chr4 148973921 148973970 -6656150 + (GTCTG)n Simple_repeat Simple_repeat 4 52 0 1 1721 880 139 0 7 chr4 148973970 148974101 -6656019 - B1_Mur4 SINE Alu -7 143 13 1 1721 288 262 16 116 chr4 148973998 148974119 -6656001 - MT2B LTR ERVL -337 264 156 1 1721 918 257 89 63 chr4 148974396 148974889 -6655231 - RMER13A LTR ERVK -66 561 21 1 1721 341 310 69 0 chr4 148974892 148974904 -6655216 - B1F2 SINE Alu -50 99 7 1 1721 399 267 0 0 chr4 148974904 148974979 -6655141 - ID_B1 SINE B4 -62 162 88 1 1721 953 206 18 67 chr4 148975006 148975230 -6654890 - B3 SINE B2 0 216 4 1 1721 351 0 0 0 chr4 148975706 148975745 -6654375 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1721 225 0 0 0 chr4 148975745 148975769 -6654351 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1721 822 219 33 22 chr4 148976100 148976282 -6653838 + B3 SINE B2 6 189 -27 1 1721 347 276 68 61 chr4 148976596 148976780 -6653340 + MIR SINE MIR 53 246 -22 1 1721 327 104 0 0 chr4 148976890 148976938 -6653182 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1721 494 331 8 8 chr4 148976940 148977074 -6653046 - RSINE1 SINE B4 -16 149 16 1 1721 308 286 111 33 chr4 148977074 148977255 -6652865 - L1MC LINE L1 -646 5687 5493 1 1721 783 119 352 0 chr4 148977402 148977561 -6652559 + B3 SINE B2 1 215 -1 1 1721 327 227 167 22 chr4 148977640 148977730 -6652390 - PB1 SINE Alu -7 120 18 1 1721 873 0 0 0 chr4 148977741 148977838 -6652282 + (TCTCCC)n Simple_repeat Simple_repeat 1 97 0 1 1721 850 172 0 0 chr4 148977855 148977989 -6652131 - B1_Mur2 SINE Alu -15 134 1 1 1721 1044 121 80 6 chr4 148978110 148978285 -6651835 - B2_Mm2 SINE B2 -2 193 6 1 1721 266 227 126 99 chr4 148978371 148978518 -6651602 - L1MC LINE L1 -2685 3461 3301 1 1721 1336 110 16 0 chr4 148978518 148978709 -6651411 - B2_Mm2 SINE B2 0 195 2 1 1721 266 227 126 99 chr4 148978709 148978739 -6651381 - L1MC LINE L1 -2846 3300 3275 1 1721 1356 119 59 0 chr4 148978739 148978941 -6651179 - B3 SINE B2 -2 214 1 1 1721 266 227 126 99 chr4 148978941 148979095 -6651025 - L1MC LINE L1 -2872 3274 3120 1 1721 974 155 165 0 chr4 148979112 148979306 -6650814 - URR1A DNA MER1_type 0 226 1 1 1721 288 181 0 9 chr4 148979345 148979402 -6650718 - B1_Mur3 SINE Alu -19 130 78 1 1721 387 145 0 0 chr4 148979425 148979494 -6650626 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1721 690 239 16 64 chr4 148979494 148979682 -6650438 - B3A SINE B2 -16 182 4 1 1721 295 284 41 31 chr4 148979746 148979844 -6650276 - L3 LINE CR1 -359 4130 4032 1 1721 953 202 0 6 chr4 148981430 148981599 -6648521 + B3 SINE B2 1 168 -48 1 1721 267 41 61 0 chr4 148982401 148982450 -6647670 + (CCCCCA)n Simple_repeat Simple_repeat 1 52 0 1 1721 1148 105 0 0 chr4 148982918 148983071 -6647049 - B2_Mm2 SINE B2 -39 156 4 1 1721 312 207 63 84 chr4 148983071 148983166 -6646954 - B3 SINE B2 -1 215 123 1 1721 282 259 16 2 chr4 148983803 148983877 -6646243 - B1_Mur1 SINE Alu -23 126 53 1 1721 1117 71 147 12 chr4 148984278 148984448 -6645672 - B2_Mm2 SINE B2 -1 194 2 1 1721 588 302 19 12 chr4 148984499 148984660 -6645460 - RSINE1 SINE B4 0 165 4 1 1721 334 211 28 0 chr4 148984753 148984824 -6645296 - B3A SINE B2 -125 73 1 1 1721 980 134 45 39 chr4 148985048 148985227 -6644893 - URR1A DNA MER1_type -2 224 45 1 1721 250 287 125 62 chr4 148985237 148985397 -6644723 - ORR1E LTR MaLR -168 191 22 1 1721 234 0 0 0 chr4 148985448 148985474 -6644646 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1721 189 0 0 0 chr4 148985475 148985496 -6644624 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1721 561 175 307 0 chr4 148985516 148985663 -6644457 - B3 SINE B2 -24 192 1 1 1721 323 289 47 28 chr4 148985724 148985831 -6644289 - PB1D10 SINE Alu -2 115 7 1 1721 874 192 7 0 chr4 148986407 148986553 -6643567 - B1_Mus1 SINE Alu 0 148 2 1 1721 21 71 0 0 chr4 148987199 148987241 -6642879 + AT_rich Low_complexity Low_complexity 1 42 0 1 1721 319 278 40 11 chr4 148987332 148987420 -6642700 + PB1D10 SINE Alu 2 94 -33 1 1721 445 139 17 17 chr4 148987426 148987543 -6642577 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1 1721 780 245 104 45 chr4 148988765 148988966 -6641154 - B3 SINE B2 -3 213 1 1 1721 1029 197 44 5 chr4 148989097 148989301 -6640819 - B3 SINE B2 0 216 5 1 1721 243 312 0 38 chr4 148989304 148989384 -6640736 - PB1D10 SINE Alu -5 112 36 1 1721 426 255 251 12 chr4 148989660 148989827 -6640293 - B3 SINE B2 -7 209 3 1 1721 312 284 45 11 chr4 148989830 148989919 -6640201 - B4A SINE B4 -199 93 2 1 1721 1067 109 109 0 chr4 148989962 148990136 -6639984 - B2_Mm1a SINE B2 0 193 1 1 1721 1286 109 16 0 chr4 148990145 148990328 -6639792 - B2_Mm2 SINE B2 -8 187 2 1 1721 1237 29 0 0 chr4 148990355 148990495 -6639625 + B1_Mm SINE Alu 1 140 -7 1 1721 180 0 0 0 chr4 148990495 148990515 -6639605 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1721 190 254 17 29 chr4 148990570 148990744 -6639376 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1721 1019 213 19 28 chr4 148990961 148991174 -6638946 + B3 SINE B2 1 211 -5 1 1721 585 303 74 99 chr4 148991207 148991449 -6638671 + ID_B1 SINE B4 7 242 -50 1 1721 240 268 59 49 chr4 148991573 148991675 -6638445 - MIR SINE MIR -35 227 125 1 1721 898 229 34 19 chr4 148991682 148991891 -6638229 + B3 SINE B2 5 216 0 1 1721 917 115 58 0 chr4 148991900 148992039 -6638081 - B1_Mus2 SINE Alu 0 147 1 1 1721 238 236 36 0 chr4 148992129 148992184 -6637936 + ZP3AR Satellite Satellite 24 80 -132 1 1721 316 269 25 43 chr4 148992148 148992267 -6637853 + ID4_ SINE ID 3 110 -42 1 1721 216 283 19 0 chr4 148992381 148992434 -6637686 + RSINE1 SINE B4 6 59 -106 1 1721 840 164 43 0 chr4 148992528 148992668 -6637452 - B1_Mus2 SINE Alu 0 147 2 1 1721 200 312 61 44 chr4 148992999 148993113 -6637007 + L2a LINE L2 3305 3420 -6 1 1721 612 276 5 121 chr4 148993579 148993695 -6636425 - B3 SINE B2 -18 198 99 1 1721 1646 16 0 25 chr4 148993695 148993891 -6636229 + B2_Mm1a SINE B2 2 192 -1 1 1721 612 276 5 121 chr4 148993891 148993972 -6636148 - B3 SINE B2 -118 98 24 1 1721 1359 80 43 0 chr4 148993973 148994160 -6635960 - B2_Mm2 SINE B2 0 195 1 1 1721 346 172 17 0 chr4 148994429 148994487 -6635633 + ID2 SINE ID 8 66 -17 1 1721 608 250 72 34 chr4 148995360 148995567 -6634553 - RLTR9A LTR ERVK 0 368 154 1 1721 926 138 0 18 chr4 148996006 148996169 -6633951 + URR1A DNA MER1_type 67 226 0 1 1721 223 115 58 0 chr4 148996184 148996236 -6633884 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 1721 1437 70 16 5 chr4 148996414 148996602 -6633518 + B2_Mm2 SINE B2 1 190 -5 1 1721 540 209 8 8 chr4 148996644 148997410 -6632710 + (CA)n Simple_repeat Simple_repeat 1 766 0 1 1721 727 210 94 39 chr4 148997514 148997717 -6632403 + B3 SINE B2 1 214 -2 1 1721 243 265 121 0 chr4 148997875 148997958 -6632162 + PB1 SINE Alu 3 95 -32 1 1721 1448 74 21 10 chr4 148998167 148998359 -6631761 + B2_Mm2 SINE B2 2 195 0 1 1721 401 271 192 6 chr4 148998399 148998555 -6631565 + B3A SINE B2 4 188 -10 1 1721 316 354 46 8 chr4 148998743 148998874 -6631246 - Cheshire DNA MER1_type -2165 255 120 1 1721 1369 98 10 5 chr4 148998877 148999071 -6631049 + B2_Mm2 SINE B2 1 195 0 1 1721 661 167 148 16 chr4 148999702 148999830 -6630290 + B1_Mur1 SINE Alu 4 148 -1 1 1721 191 114 29 0 chr4 149000842 149000877 -6629243 + (TTC)n Simple_repeat Simple_repeat 2 37 0 1 1721 314 91 18 0 chr4 149001847 149001902 -6628218 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 2 1721 372 304 139 64 chr4 149002596 149002863 -6627257 - B4A SINE B4 0 292 6 3 1721 254 333 0 0 chr4 149003919 149003988 -6626132 - ID2 SINE ID -2 81 13 4 1721 267 114 0 0 chr4 149004032 149004076 -6626044 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 5 1721 38 96 0 0 chr4 149004076 149004191 -6625929 + AT_rich Low_complexity Low_complexity 1 115 0 6 1721 267 122 0 0 chr4 149004192 149004241 -6625879 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1721 1089 95 7 0 chr4 149004241 149004388 -6625732 - B1_Mus1 SINE Alu 0 148 1 8 1721 861 147 7 34 chr4 149004397 149004545 -6625575 - B1_Mur4 SINE Alu -6 144 1 9 1721 498 230 115 0 chr4 149004631 149004779 -6625341 - B3A SINE B2 -20 178 14 1 1721 372 274 0 0 chr4 149004772 149004856 -6625264 - PB1D10 SINE Alu -11 106 23 1 1721 616 273 29 29 chr4 149005081 149005251 -6624869 + B3 SINE B2 47 216 0 1 1721 292 137 20 0 chr4 149005267 149005318 -6624802 - B1_Mus2 SINE Alu -33 114 63 1 1721 1090 60 8 0 chr4 149005360 149005493 -6624627 + B1_Mus1 SINE Alu 2 135 -13 1 1721 234 0 0 0 chr4 149005493 149005519 -6624601 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1721 332 278 174 0 chr4 149005528 149005643 -6624477 + B1_Mus1 SINE Alu 14 148 0 1 1721 23 33 0 0 chr4 149006787 149006817 -6623303 + AT_rich Low_complexity Low_complexity 1 30 0 1 1721 250 348 8 57 chr4 149006817 149006939 -6623181 - RSINE1 SINE B4 0 165 50 1 1721 250 173 0 55 chr4 149007010 149007065 -6623055 + L1M5 LINE L1 5619 5670 -454 1 1721 879 191 163 20 chr4 149007242 149007493 -6622627 - RLTR25B LTR ERVK 0 1028 742 2 1721 1223 184 33 6 chr4 149007616 149007913 -6622207 - RLTR25B LTR ERVK -213 890 513 2 1721 354 91 0 154 chr4 149007937 149008015 -6622105 - RLTR25B LTR ERVK -692 336 271 2 1721 229 270 0 31 chr4 149008015 149008080 -6622040 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2 1721 457 239 96 7 chr4 149008169 149008304 -6621816 - B1_Mur1 SINE Alu -2 147 1 2 1721 225 240 0 0 chr4 149008352 149008451 -6621669 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1721 384 22 0 0 chr4 149008451 149008496 -6621624 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1721 337 201 169 2 chr4 149008518 149008627 -6621493 - B1F SINE Alu -20 129 10 2 1721 269 279 0 0 chr4 149009631 149009692 -6620428 + RSINE1 SINE B4 2 62 -103 2 1721 216 0 0 0 chr4 149009716 149009740 -6620380 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1721 1105 71 14 0 chr4 149009740 149009870 -6620250 - B1_Mm SINE Alu -12 135 4 2 1721 448 267 19 38 chr4 149009872 149009977 -6620143 + RSINE1 SINE B4 48 150 -15 2 1721 1129 82 0 39 chr4 149009993 149010146 -6619974 + B1_Mus1 SINE Alu 2 148 0 3 1721 271 243 13 91 chr4 149011238 149011392 -6618728 - L1MC5 LINE L1 -297 7664 7523 3 1721 183 146 0 0 chr4 149011457 149011498 -6618622 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1721 469 126 126 0 chr4 149011498 149011593 -6618527 - B1F2 SINE Alu 0 149 43 3 1721 550 138 18 0 chr4 149011599 149011708 -6618412 + C-rich Low_complexity Low_complexity 5 115 0 3 1721 189 0 0 0 chr4 149012687 149012708 -6617412 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1721 180 0 0 0 chr4 149012941 149012961 -6617159 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1721 253 307 112 21 chr4 149013035 149013178 -6616942 - MIRm SINE MIR -101 175 20 3 1721 539 331 94 13 chr4 149013256 149013592 -6616528 - Charlie4a DNA MER1_type -116 392 39 3 1721 279 0 0 0 chr4 149013810 149013841 -6616279 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1721 1123 56 21 0 chr4 149013841 149013985 -6616135 - B1_Mus2 SINE Alu 0 147 1 4 1721 372 43 0 0 chr4 149014158 149014204 -6615916 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1721 1036 127 6 28 chr4 149014382 149014412 -6615708 - B2_Mm1a SINE B2 -18 175 150 4 1721 320 43 0 21 chr4 149014412 149014459 -6615661 + (TATG)n Simple_repeat Simple_repeat 3 48 0 4 1721 1036 127 6 28 chr4 149014459 149014606 -6615514 - B2_Mm1a SINE B2 -44 149 2 4 1721 1269 184 0 19 chr4 149014613 149014829 -6615291 - B3 SINE B2 -3 213 2 4 1721 566 354 64 11 chr4 149016418 149016684 -6613436 + B4A SINE B4 11 290 -2 4 1721 230 106 21 0 chr4 149018394 149018441 -6611679 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1721 1202 68 0 0 chr4 149018443 149018589 -6611531 - B1_Mus1 SINE Alu -2 146 1 4 1721 285 262 38 0 chr4 149018730 149018810 -6611310 - ID4_ SINE ID 0 83 1 4 1721 216 0 75 25 chr4 149018879 149018919 -6611201 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 4 1721 321 82 0 0 chr4 149020545 149020594 -6609526 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1721 318 152 0 0 chr4 149021505 149021564 -6608556 + GA-rich Low_complexity Low_complexity 2 60 0 5 1721 23 33 0 0 chr4 149022032 149022062 -6608058 + AT_rich Low_complexity Low_complexity 1 30 0 5 1721 440 182 45 0 chr4 149023071 149023159 -6606961 - B1F2 SINE Alu -56 93 2 5 1721 429 299 23 103 chr4 149023159 149023255 -6606865 - ID SINE ID -142 82 1 5 1721 402 173 0 0 chr4 149025180 149025255 -6604865 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1721 1115 208 203 34 chr4 149025509 149025868 -6604252 + MTD LTR MaLR 1 419 0 5 1722 594 165 17 34 chr4 149030050 149030169 -6599951 + URR1B DNA MER1_type 5 121 -104 5 1722 1264 66 1 6 chr4 149030169 149030361 -6599759 + B2_Mm2 SINE B2 1 186 -7 5 1722 482 151 107 25 chr4 149030337 149030459 -6599661 + URR1B DNA MER1_type 91 222 -3 5 1722 225 0 0 0 chr4 149031710 149031735 -6598385 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1722 522 0 0 0 chr4 149033414 149033472 -6596648 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 6 1722 873 217 85 0 chr4 149033496 149033685 -6596435 + B3 SINE B2 12 216 0 6 1722 319 222 111 0 chr4 149034646 149034727 -6595393 - B1F2 SINE Alu -50 99 10 6 1722 537 278 67 17 chr4 149034798 149034977 -6595143 + B3A SINE B2 1 188 -10 6 1722 398 296 58 15 chr4 149035072 149035209 -6594911 + RSINE1 SINE B4 6 148 -17 6 1722 25 31 0 0 chr4 149035214 149035246 -6594874 + AT_rich Low_complexity Low_complexity 1 32 0 6 1722 1105 66 0 0 chr4 149035253 149035390 -6594730 + B1_Mus2 SINE Alu 2 138 -9 6 1722 297 0 0 0 chr4 149035390 149035423 -6594697 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 6 1722 600 205 55 0 chr4 149035546 149035673 -6594447 - RSINE1 SINE B4 -28 137 4 6 1722 620 275 98 2 chr4 149035674 149035877 -6594243 - ID_B1 SINE B4 -59 233 13 6 1722 407 328 50 91 chr4 149036558 149036651 -6593469 + B4 SINE B4 2 80 -212 7 1722 723 231 107 10 chr4 149036651 149036848 -6593272 + B3 SINE B2 1 216 0 7 1722 407 328 50 91 chr4 149036848 149036952 -6593168 + B4 SINE B4 81 191 -101 7 1722 504 0 0 0 chr4 149036958 149037014 -6593106 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1722 382 94 34 34 chr4 149037014 149037102 -6593018 + GA-rich Low_complexity Low_complexity 3 90 0 7 1722 344 330 10 0 chr4 149037765 149037868 -6592252 + B1F1 SINE Alu 7 110 -39 7 1722 324 0 0 0 chr4 149037883 149037919 -6592201 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1722 360 0 0 0 chr4 149037919 149037958 -6592162 + (CACG)n Simple_repeat Simple_repeat 1 40 0 7 1722 445 285 0 57 chr4 149038288 149038454 -6591666 - Lx8 LINE L1 -560 7136 6980 7 1722 499 208 74 19 chr4 149038613 149038721 -6591399 - PB1D10 SINE Alu 0 117 4 7 1722 913 241 46 23 chr4 149038757 149038796 -6591324 + ID SINE ID 3 40 -184 7 1722 378 0 0 0 chr4 149038796 149038838 -6591282 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1722 913 241 46 23 chr4 149038838 149039015 -6591105 + ID_B1 SINE B4 41 223 -1 7 1722 210 91 0 0 chr4 149039027 149039060 -6591060 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 8 1722 258 267 45 62 chr4 149039819 149039931 -6590189 + L1M5 LINE L1 5548 5657 -516 8 1722 248 211 18 0 chr4 149040163 149040220 -6589900 + ID_B1 SINE B4 166 223 -1 8 1722 369 0 0 0 chr4 149040334 149040375 -6589745 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1722 1177 56 7 0 chr4 149040396 149040540 -6589580 + B1_Mus1 SINE Alu 2 146 -2 8 1722 576 73 0 0 chr4 149040543 149040625 -6589495 + (TA)n Simple_repeat Simple_repeat 2 83 0 8 1722 310 338 105 0 chr4 149040679 149040812 -6589308 - B3A SINE B2 -50 148 2 8 1722 233 200 0 20 chr4 149040839 149040890 -6589230 + MLT1K LTR MaLR 454 503 -92 8 1722 285 146 0 0 chr4 149040935 149040973 -6589147 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1722 1172 75 0 0 chr4 149040973 149041120 -6589000 - B1_Mm SINE Alu 0 147 1 9 1722 285 146 0 0 chr4 149041120 149041136 -6588984 + (T)n Simple_repeat Simple_repeat 1 16 0 9 1722 440 264 41 16 chr4 149041140 149041263 -6588857 + B1_Mur4 SINE Alu 25 150 0 9 1722 793 198 178 47 chr4 149041266 149041457 -6588663 + B3 SINE B2 1 216 0 9 1722 789 286 52 52 chr4 149042098 149042174 -6587946 + B4 SINE B4 10 85 -207 9 1722 1034 92 50 0 chr4 149042174 149042315 -6587805 + B1_Mus1 SINE Alu 1 148 0 9 1722 789 286 52 52 chr4 149042315 149042507 -6587613 + B4 SINE B4 86 278 -14 9 1722 212 343 95 48 chr4 149043717 149044032 -6586088 - L2a LINE L2 -70 3356 3027 9 1722 271 276 33 33 chr4 149044187 149044277 -6585843 + MLT1A1 LTR MaLR 300 389 -19 9 1722 423 235 0 12 chr4 149044593 149044679 -6585441 + PB1D10 SINE Alu 18 102 -15 9 1722 254 311 98 32 chr4 149044679 149044802 -6585318 + ID_B1 SINE B4 88 218 -6 9 1722 702 230 29 73 chr4 149044811 149045017 -6585103 + B3A SINE B2 1 197 -1 1 1722 473 206 159 0 chr4 149045023 149045149 -6584971 + B1_Mur4 SINE Alu 1 146 -4 1 1722 1424 84 11 0 chr4 149045153 149045343 -6584777 + B2_Mm1t SINE B2 2 193 0 1 1722 890 214 82 24 chr4 149045373 149045579 -6584541 - ID_B1 SINE B4 -5 219 2 1 1722 1273 7 7 0 chr4 149045641 149045783 -6584337 + B1_Mus1 SINE Alu 5 147 -1 1 1722 228 35 0 0 chr4 149045785 149045814 -6584306 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1722 659 326 52 63 chr4 149045944 149046307 -6583813 - ORR1E LTR MaLR 0 359 1 1 1722 573 184 18 0 chr4 149046814 149046928 -6583192 + B3 SINE B2 101 216 0 1 1722 293 351 8 42 chr4 149047007 149047126 -6582994 + RSINE1 SINE B4 23 137 -28 1 1722 356 73 0 68 chr4 149047143 149047154 -6582966 - B1_Mur4 SINE Alu -1 149 142 1 1722 396 0 0 0 chr4 149047154 149047198 -6582922 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1722 356 73 0 68 chr4 149047198 149047245 -6582875 - B1_Mur4 SINE Alu -9 141 95 1 1722 876 221 0 0 chr4 149047346 149047495 -6582625 + B1_Mur4 SINE Alu 1 149 -1 1 1722 218 229 0 20 chr4 149047495 149047544 -6582576 + GA-rich Low_complexity Low_complexity 1 48 0 1 1722 1123 204 48 9 chr4 149047822 149048088 -6582032 - ORR1D1 LTR MaLR -35 332 54 1 1722 235 232 22 44 chr4 149050189 149050279 -6579841 + (CGGGG)n Simple_repeat Simple_repeat 5 92 0 1 1722 1232 175 132 26 chr4 149050576 149050887 -6579233 - MTD LTR MaLR 0 419 76 1 1722 1404 94 21 0 chr4 149050914 149051105 -6579015 + B2_Mm2 SINE B2 1 195 0 1 1722 260 172 7 0 chr4 149051428 149051479 -6578641 - ID4_ SINE ID -99 53 1 1 1722 1255 62 51 0 chr4 149051483 149051660 -6578460 - B2_Mm2 SINE B2 0 195 10 1 1722 472 0 133 0 chr4 149051660 149051788 -6578332 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 1722 421 283 35 9 chr4 149051791 149051905 -6578215 - B1_Mur1 SINE Alu -5 144 28 1 1722 336 222 122 0 chr4 149051895 149051985 -6578135 - PB1 SINE Alu -6 121 21 1 1722 804 177 0 39 chr4 149052515 149052668 -6577452 + B1_Mur2 SINE Alu 2 148 -1 1 1722 544 300 46 60 chr4 149053202 149053490 -6576630 + RSINE1 SINE B4 5 288 -4 1 1722 407 264 123 24 chr4 149053858 149054113 -6576007 + MTD LTR MaLR 10 326 -93 1 1722 997 236 14 103 chr4 149054111 149054298 -6575822 + MT2B LTR ERVL 274 385 -216 1 1722 1165 144 86 34 chr4 149054298 149054507 -6575613 - URR1B DNA MER1_type -4 221 2 1 1722 997 223 16 118 chr4 149054507 149054688 -6575432 + MT2B LTR ERVL 386 561 -40 1 1722 375 259 0 0 chr4 149054688 149054800 -6575320 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1722 246 119 0 0 chr4 149054800 149054842 -6575278 + MT2B LTR ERVL 541 582 -2 1 1722 376 145 11 3 chr4 149054842 149054910 -6575210 - ORR1C1 LTR MaLR -313 71 1 1 1722 333 183 121 12 chr4 149054910 149054989 -6575131 + MTD LTR MaLR 260 404 -15 1 1722 1691 205 38 35 chr4 149055088 149055316 -6574804 - MTB_Mm LTR MaLR -6 401 171 1 1722 1191 48 7 20 chr4 149055316 149055466 -6574654 - B1_Mus1 SINE Alu 0 148 1 1 1722 1691 205 38 35 chr4 149055466 149055637 -6574483 - MTB_Mm LTR MaLR -237 170 1 1 1722 4921 145 211 49 chr4 149055637 149055773 -6574347 - MTB_Mm-int LTR MaLR 0 1258 1064 1 1722 1267 48 0 0 chr4 149055773 149055919 -6574201 - B1_Mm SINE Alu -1 146 1 1 1722 4921 145 211 49 chr4 149055919 149056556 -6573564 - MTB_Mm-int LTR MaLR -195 1063 384 1 1722 1454 63 21 16 chr4 149056556 149056749 -6573371 - B2_Mm2 SINE B2 0 195 2 1 1722 4921 145 211 49 chr4 149056749 149057056 -6573064 - MTB_Mm-int LTR MaLR -875 383 2 1 1722 2128 147 25 35 chr4 149057059 149057462 -6572658 - MTB_Mm LTR MaLR -8 399 1 1 1722 315 257 8 74 chr4 149057561 149057683 -6572437 - PB1 SINE Alu -3 124 11 1 1722 693 0 0 0 chr4 149058459 149058536 -6571584 + (GAA)n Simple_repeat Simple_repeat 2 78 0 1 1722 223 152 0 0 chr4 149058702 149058735 -6571385 + polypyrimidine Low_complexity Low_complexity 2 34 0 1 1722 552 168 0 0 chr4 149058735 149058836 -6571284 + CT-rich Low_complexity Low_complexity 1 101 0 1 1722 346 323 57 6 chr4 149059385 149059544 -6570576 - MER21B LTR ERV1 -288 575 409 1 1722 188 39 18 105 chr4 149059667 149059724 -6570396 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 1 1722 278 179 2 36 chr4 149059734 149059798 -6570322 - B1F SINE Alu -1 148 86 1 1722 1270 40 0 0 chr4 149059818 149059966 -6570154 + B1_Mus1 SINE Alu 1 148 0 1 1722 418 322 58 43 chr4 149060502 149060690 -6569430 - MER21B LTR ERV1 -672 191 1 1 1722 227 331 89 30 chr4 149061279 149061313 -6568807 - YREP_Mm Unknown Unknown -1479 333 190 1 1722 1021 31 0 0 chr4 149061313 149061441 -6568679 + B1_Mus1 SINE Alu 21 148 0 1 1722 336 263 0 13 chr4 149061476 149061553 -6568567 + B1F2 SINE Alu 64 139 -10 1 1722 360 234 54 39 chr4 149062042 149062171 -6567949 + B3 SINE B2 86 216 0 1 1722 465 344 40 57 chr4 149062202 149062498 -6567622 + B4 SINE B4 2 292 0 1 1722 315 0 0 0 chr4 149062577 149062612 -6567508 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1722 518 289 132 8 chr4 149062679 149062937 -6567183 + Charlie16a DNA MER1_type 53 342 0 1 1722 431 284 0 0 chr4 149063343 149063438 -6566682 - PB1D10 SINE Alu -21 96 2 1 1722 225 0 0 0 chr4 149063479 149063504 -6566616 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1722 399 279 15 83 chr4 149063532 149063619 -6566501 - RSINE1 SINE B4 -39 126 47 1 1722 1526 53 11 0 chr4 149063619 149063809 -6566311 + B2_Mm1t SINE B2 2 193 0 1 1722 399 279 15 83 chr4 149063809 149063854 -6566266 - RSINE1 SINE B4 -119 46 3 1 1722 306 0 0 0 chr4 149063860 149063894 -6566226 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1722 614 253 93 22 chr4 149064522 149064704 -6565416 + B3A SINE B2 3 197 -1 1 1722 348 266 27 18 chr4 149064737 149064848 -6565272 + BC1_Mm scRNA scRNA 2 113 -39 1 1722 959 222 33 30 chr4 149064938 149065192 -6564928 - ID_B1 SINE B4 -45 247 2 1 1722 250 342 87 47 chr4 149065636 149065870 -6564250 - MIRb SINE MIR -10 266 20 1 1722 520 352 19 14 chr4 149066254 149066467 -6563653 + B4A SINE B4 1 214 -78 1 1722 669 81 86 1 chr4 149066446 149066564 -6563556 - B1_Mus1 SINE Alu -20 127 1 1 1722 233 336 43 34 chr4 149066695 149066724 -6563396 + PB1D7 SINE Alu 1 115 -2 1 1722 435 235 0 0 chr4 149066724 149066809 -6563311 + ID_B1 SINE B4 133 217 -7 1 1722 264 257 98 10 chr4 149066837 149066939 -6563181 + L1MB3 LINE L1 5921 6031 -152 1 1722 187 217 87 0 chr4 149067028 149067074 -6563046 - MIRc SINE MIR -141 127 78 1 1722 504 239 166 12 chr4 149067075 149067244 -6562876 + B3A SINE B2 3 197 -1 1 1722 225 0 0 0 chr4 149067271 149067296 -6562824 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1722 986 93 28 28 chr4 149067296 149067429 -6562691 - B1_Mus1 SINE Alu -10 138 3 1 1722 411 73 0 0 chr4 149067551 149067606 -6562514 + (CCCTG)n Simple_repeat Simple_repeat 5 59 0 1 1722 1335 50 0 0 chr4 149068299 149068479 -6561641 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1722 272 200 69 81 chr4 149068479 149068558 -6561562 - B4 SINE B4 -8 284 206 1 1722 879 172 0 0 chr4 149068576 149068721 -6561399 - B1_Mur4 SINE Alu 0 150 6 1 1722 29 0 0 0 chr4 149068736 149068765 -6561355 + AT_rich Low_complexity Low_complexity 1 29 0 1 1722 871 145 65 0 chr4 149068766 149068904 -6561216 + B1_Mus1 SINE Alu 2 148 0 1 1722 684 252 15 25 chr4 149068947 149069146 -6560974 - B3A SINE B2 0 198 2 1 1722 182 37 0 36 chr4 149069149 149069177 -6560943 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1722 390 270 94 75 chr4 149069179 149069339 -6560781 - RSINE1 SINE B4 0 165 3 1 1722 242 154 0 0 chr4 149069340 149069379 -6560741 - B4 SINE B4 -79 213 175 1 1722 849 140 41 14 chr4 149069826 149069971 -6560149 - B1_Mur4 SINE Alu -1 149 1 1 1722 267 31 0 0 chr4 149071963 149071995 -6558125 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1722 927 139 20 14 chr4 149073130 149073276 -6556844 + B1_Mus2 SINE Alu 1 147 0 1 1722 755 175 28 14 chr4 149073309 149073454 -6556666 + B1_Mur1 SINE Alu 2 148 -1 1 1722 511 228 18 3 chr4 149073581 149073710 -6556410 - B1_Mus2 SINE Alu -9 140 3 1 1722 246 333 41 73 chr4 149073610 149073733 -6556387 - MT2B LTR ERVL -344 257 139 1 1722 1002 221 19 28 chr4 149074418 149074632 -6555488 + ID_B1 SINE B4 1 212 -12 1 1722 897 185 105 11 chr4 149074632 149074823 -6555297 - MTC LTR MaLR -8 413 205 1 1722 2979 179 82 7 chr4 149074797 149075410 -6554710 - MTC-int LTR MaLR -597 661 3 1 1722 392 194 0 0 chr4 149075412 149075479 -6554641 - MTC LTR MaLR -2 419 353 1 1722 675 32 84 0 chr4 149075479 149075574 -6554546 + B1_Mus2 SINE Alu 45 147 0 1 1722 1572 172 139 6 chr4 149075562 149075907 -6554213 - MTC LTR MaLR -30 391 1 1 1722 493 298 28 7 chr4 149075987 149076097 -6554023 + RSINE1 SINE B4 21 134 -31 1 1722 210 71 0 0 chr4 149076097 149076125 -6553995 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 1 1722 493 298 28 7 chr4 149076125 149076156 -6553964 + RSINE1 SINE B4 135 165 0 1 1722 316 297 0 24 chr4 149077280 149077392 -6552728 + MIR SINE MIR 80 186 -82 1 1722 219 69 0 0 chr4 149077392 149077421 -6552699 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1722 1155 95 0 0 chr4 149077421 149077568 -6552552 - B1_Mus1 SINE Alu 0 148 2 1 1722 592 245 157 60 chr4 149077605 149077853 -6552267 + B4A SINE B4 3 274 -18 1 1722 456 264 20 60 chr4 149078080 149078229 -6551891 + B1F SINE Alu 7 149 0 1 1722 964 110 0 33 chr4 149078862 149079012 -6551108 - B1_Mus2 SINE Alu -1 146 2 1 1722 717 73 0 0 chr4 149079012 149079108 -6551012 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 1 1722 423 271 31 0 chr4 149079111 149079207 -6550913 - PB1D9 SINE Alu -21 99 1 1 1722 375 23 0 0 chr4 149079209 149079253 -6550867 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1722 733 165 152 41 chr4 149079302 149079473 -6550647 - MTC LTR MaLR -204 190 1 1 1722 251 255 0 0 chr4 149079867 149079918 -6550202 + CT-rich Low_complexity Low_complexity 4 54 0 1 1722 514 78 301 0 chr4 149079942 149080045 -6550075 - B1_Mus1 SINE Alu -1 147 14 1 1722 279 324 0 0 chr4 149080061 149080172 -6549948 + T-rich Low_complexity Low_complexity 1 111 0 1 1722 255 152 0 0 chr4 149080239 149080285 -6549835 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1722 551 180 39 20 chr4 149080354 149080456 -6549664 + PB1D9 SINE Alu 1 104 -16 2 1722 252 0 0 0 chr4 149080457 149080485 -6549635 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1722 562 105 26 11 chr4 149080485 149080585 -6549535 - B1_Mus1 SINE Alu 0 120 2 2 1722 4608 214 62 57 chr4 149080585 149081089 -6549031 + ORR1B1-int LTR MaLR 93 531 -978 2 1722 1292 104 16 5 chr4 149081089 149081273 -6548847 + B2_Mm2 SINE B2 1 186 -9 2 1722 4608 214 62 57 chr4 149081273 149082178 -6547942 + ORR1B1-int LTR MaLR 532 1508 -1 2 1722 1921 148 115 14 chr4 149082178 149082535 -6547585 + ORR1B1 LTR MaLR 1 393 -1 2 1722 282 241 0 0 chr4 149082893 149082951 -6547169 - B1_Mus1 SINE Alu -90 58 1 2 1722 542 312 62 23 chr4 149083408 149083585 -6546535 + B3A SINE B2 1 184 -14 2 1722 935 182 155 0 chr4 149083605 149083645 -6546475 - B3 SINE B2 0 216 177 2 1722 423 0 0 0 chr4 149083645 149083692 -6546428 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1722 935 182 155 0 chr4 149083692 149083838 -6546282 - B3 SINE B2 -40 176 3 2 1722 521 129 77 29 chr4 149083846 149083950 -6546170 - B1_Mur3 SINE Alu 0 149 41 2 1722 189 0 0 0 chr4 149083950 149083971 -6546149 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1722 1120 72 0 0 chr4 149083971 149084110 -6546010 - B1_Mus1 SINE Alu -8 140 2 2 1722 915 96 7 0 chr4 149084111 149084246 -6545874 + B1_Mus2 SINE Alu 12 147 0 2 1722 1620 62 0 0 chr4 149084249 149084442 -6545678 + B2_Mm1t SINE B2 1 193 0 2 1722 211 164 36 0 chr4 149084442 149084497 -6545623 + (CAA)n Simple_repeat Simple_repeat 3 59 0 2 1722 392 92 0 58 chr4 149085006 149085075 -6545045 + B2_Mm2 SINE B2 1 65 -130 2 1722 28 0 0 0 chr4 149085076 149085104 -6545016 + AT_rich Low_complexity Low_complexity 1 28 0 2 1722 301 187 15 22 chr4 149085144 149085281 -6544839 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 1722 226 222 43 6 chr4 149085345 149085508 -6544612 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 1722 543 324 61 16 chr4 149085820 149086065 -6544055 + MER21B LTR ERV1 1 256 -607 2 1722 499 239 207 6 chr4 149086110 149086274 -6543846 - ID_B1 SINE B4 -4 220 24 2 1722 376 366 43 14 chr4 149086319 149086527 -6543593 + MER21B LTR ERV1 399 612 -251 2 1722 252 143 0 0 chr4 149087045 149087087 -6543033 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 2 1722 474 204 0 0 chr4 149087260 149087368 -6542752 + (TG)n Simple_repeat Simple_repeat 2 109 0 2 1722 483 100 0 0 chr4 149087393 149087463 -6542657 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 2 1722 460 286 115 36 chr4 149087494 149087686 -6542434 - B4 SINE B4 -78 214 8 2 1722 260 47 186 0 chr4 149088642 149088685 -6541435 - B3 SINE B2 -165 51 1 2 1722 603 286 148 64 chr4 149088857 149089230 -6540890 + MTD LTR MaLR 2 405 -14 2 1722 441 110 0 0 chr4 149090095 149090168 -6539952 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1722 225 287 92 0 chr4 149091541 149091628 -6538492 + PB1D9 SINE Alu 23 117 -3 2 1722 296 24 24 0 chr4 149093057 149093098 -6537022 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1722 408 256 64 32 chr4 149093928 149094053 -6536067 - B3 SINE B2 -3 213 85 2 1722 308 235 59 0 chr4 149094365 149094433 -6535687 - ID2 SINE ID -9 74 3 2 1722 298 361 16 0 chr4 149094715 149094837 -6535283 - B3A SINE B2 -69 129 6 2 1722 318 115 0 0 chr4 149094851 149094903 -6535217 + (TCTG)n Simple_repeat Simple_repeat 4 55 0 2 1722 210 192 0 0 chr4 149094903 149094955 -6535165 + (TATG)n Simple_repeat Simple_repeat 2 53 0 2 1722 221 211 0 0 chr4 149094975 149095013 -6535107 - PB1D10 SINE Alu -17 100 63 2 1722 288 179 18 0 chr4 149094984 149095040 -6535080 - B1F SINE Alu -26 123 67 2 1722 475 195 42 42 chr4 149095167 149095285 -6534835 + B1_Mus2 SINE Alu 14 131 -16 2 1722 1480 186 145 35 chr4 149095313 149095741 -6534379 + RMER1C Other Other 868 1342 0 2 1722 977 261 5 10 chr4 149095840 149096045 -6534075 - ID_B1 SINE B4 -19 205 2 2 1722 22 0 0 0 chr4 149097883 149097905 -6532215 + GC_rich Low_complexity Low_complexity 1 22 0 2 1722 213 39 0 0 chr4 149098576 149098602 -6531518 + (CTCTG)n Simple_repeat Simple_repeat 1 26 0 2 1722 201 147 0 0 chr4 149099578 149099612 -6530508 + (CACG)n Simple_repeat Simple_repeat 2 35 0 2 1722 1564 33 5 5 chr4 149102700 149102885 -6527235 + B2_Mm2 SINE B2 2 186 -9 2 1722 1225 48 0 20 chr4 149104282 149104432 -6525688 + B1_Mus2 SINE Alu 1 147 0 2 1722 280 58 38 19 chr4 149104432 149104458 -6525662 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 2 1722 1108 108 91 0 chr4 149104458 149104634 -6525486 + B2_Mm1t SINE B2 2 193 0 2 1722 280 58 38 19 chr4 149104634 149104660 -6525460 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1722 384 284 155 7 chr4 149104678 149104820 -6525300 - RSINE1 SINE B4 0 165 3 2 1722 180 0 0 0 chr4 149106451 149106471 -6523649 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1722 579 216 147 7 chr4 149107282 149107427 -6522693 + B3A SINE B2 5 160 -38 2 1722 360 0 0 0 chr4 149107427 149107467 -6522653 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1722 289 262 142 105 chr4 149107467 149107483 -6522637 + B2_Mm2 SINE B2 156 172 -23 2 1722 268 294 119 0 chr4 149109824 149109933 -6520187 + MIR SINE MIR 49 170 -92 2 1722 1193 29 7 0 chr4 149110539 149110678 -6519442 + B1_Mus2 SINE Alu 3 142 -5 2 1722 186 103 0 0 chr4 149110678 149110707 -6519413 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 1722 31 44 0 0 chr4 149111892 149111937 -6518183 + GC_rich Low_complexity Low_complexity 1 45 0 2 1722 409 267 49 49 chr4 149112772 149112894 -6517226 + MT2B LTR ERVL 144 265 -336 2 1722 495 186 94 71 chr4 149112796 149112923 -6517197 + B1_Mur1 SINE Alu 6 135 -14 2 1722 213 39 0 0 chr4 149112925 149112951 -6517169 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1722 957 132 7 34 chr4 149113041 149113190 -6516930 + B1_Mur3 SINE Alu 5 149 0 2 1722 1568 62 0 5 chr4 149113295 149113488 -6516632 - B2_Mm1a SINE B2 -1 192 1 2 1722 649 252 26 19 chr4 149114065 149114219 -6515901 - B3 SINE B2 -61 155 1 2 1722 413 287 0 0 chr4 149114877 149114964 -6515156 + B1_Mm SINE Alu 5 91 -56 2 1722 620 94 292 0 chr4 149115140 149115246 -6514874 + B1_Mus1 SINE Alu 1 137 -11 2 1722 242 359 19 0 chr4 149115401 149115504 -6514616 + RMER1B Other Other 43 147 -919 2 1722 335 301 43 73 chr4 149115628 149115861 -6514259 + RMER1C Other Other 493 718 -624 2 1722 577 284 28 6 chr4 149115944 149116121 -6513999 + RMER1C Other Other 1069 1249 -93 2 1722 235 257 14 0 chr4 149116291 149116361 -6513759 + A-rich Low_complexity Low_complexity 1 71 0 2 1722 556 208 63 16 chr4 149116405 149116532 -6513588 + ID_B1 SINE B4 82 214 -10 2 1722 274 167 53 53 chr4 149116528 149116585 -6513535 + B3A SINE B2 25 81 -117 2 1722 1048 30 130 0 chr4 149116612 149116743 -6513377 + B1_Mus1 SINE Alu 1 148 0 2 1722 243 0 0 0 chr4 149116743 149116770 -6513350 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1722 1473 70 0 5 chr4 149116900 149117086 -6513034 + B2_Mm2 SINE B2 1 185 -10 2 1722 228 197 53 132 chr4 149117459 149117535 -6512585 - PB1D10 SINE Alu -5 112 43 2 1722 792 156 81 7 chr4 149117702 149117838 -6512282 + B1_Mus2 SINE Alu 2 147 0 2 1722 216 0 0 0 chr4 149117859 149117883 -6512237 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1722 447 262 19 9 chr4 149118179 149118287 -6511833 + PB1D10 SINE Alu 2 110 -7 2 1722 189 0 0 0 chr4 149118321 149118342 -6511778 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 2 1722 543 161 188 31 chr4 149119156 149119284 -6510836 + B1_Mur2 SINE Alu 2 149 0 2 1722 180 77 0 0 chr4 149119580 149119606 -6510514 + (TTTTTG)n Simple_repeat Simple_repeat 6 31 0 2 1722 1054 30 98 0 chr4 149119606 149119739 -6510381 - B1_Mus2 SINE Alu 0 147 2 2 1722 1320 52 23 17 chr4 149119740 149119917 -6510203 - B2_Mm2 SINE B2 -16 179 2 2 1722 334 264 14 0 chr4 149119998 149120070 -6510050 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 2 1722 519 147 96 19 chr4 149120085 149120189 -6509931 + B1_Mur4 SINE Alu 38 149 -1 2 1722 3150 12 3 0 chr4 149120343 149120688 -6509432 + ORR1A0 LTR MaLR 1 346 0 2 1722 14415 48 12 1 chr4 149120688 149122461 -6507659 + ORR1A0-int LTR MaLR 1 1792 0 2 1722 3007 38 3 0 chr4 149122461 149122806 -6507314 + ORR1A0 LTR MaLR 1 346 0 2 1722 322 221 29 0 chr4 149123906 149123974 -6506146 - ID4 SINE ID -11 72 3 2 1722 1401 80 0 21 chr4 149124120 149124312 -6505808 - B2_Mm2 SINE B2 -7 188 1 2 1722 247 238 333 20 chr4 149124361 149124511 -6505609 - B3A SINE B2 0 198 2 2 1722 341 272 137 50 chr4 149125734 149125916 -6504204 + Charlie4 DNA MER1_type 88 285 -1676 2 1722 423 187 10 62 chr4 149126029 149126126 -6503994 + PB1D10 SINE Alu 25 116 -1 2 1722 929 96 96 0 chr4 149128283 149128419 -6501701 - B1_Mur4 SINE Alu -1 149 1 2 1722 1282 79 6 17 chr4 149129234 149129415 -6500705 + B2_Mm1a SINE B2 12 190 -3 2 1722 1360 108 0 5 chr4 149129498 149129693 -6500427 + B2_Mm2 SINE B2 2 195 0 2 1722 1242 61 0 0 chr4 149129695 149129842 -6500278 + B1_Mm SINE Alu 1 147 0 2 1722 23 0 0 0 chr4 149129842 149129865 -6500255 + AT_rich Low_complexity Low_complexity 1 23 0 2 1722 651 237 96 5 chr4 149130307 149130506 -6499614 + ID_B1 SINE B4 4 220 -4 2 1722 1254 35 0 0 chr4 149130720 149130865 -6499255 - B1_Mm SINE Alu 0 147 3 2 1722 319 268 43 21 chr4 149130890 149130996 -6499124 + B1F1 SINE Alu 21 122 -5 2 1722 434 230 31 33 chr4 149131051 149131172 -6498948 - PB1D10 SINE Alu -18 131 18 2 1722 842 132 64 29 chr4 149131614 149131754 -6498366 - B1_Mur4 SINE Alu 0 150 6 2 1722 397 213 16 156 chr4 149131645 149131773 -6498347 - MT2B LTR ERVL -339 262 153 2 1722 374 342 61 31 chr4 149131827 149131990 -6498130 + L1MC4 LINE L1 7874 8041 -1 3 1722 222 37 0 0 chr4 149132002 149132029 -6498091 + (CAG)n Simple_repeat Simple_repeat 1 27 0 3 1722 569 182 45 0 chr4 149132030 149132140 -6497980 + PB1D9 SINE Alu 4 118 -2 3 1722 450 0 0 0 chr4 149132140 149132190 -6497930 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 3 1722 454 242 121 78 chr4 149133082 149133248 -6496872 + B3A SINE B2 4 176 -22 3 1722 610 94 43 0 chr4 149133913 149134030 -6496090 + (TGGG)n Simple_repeat Simple_repeat 2 123 0 3 1722 921 140 15 0 chr4 149134149 149134285 -6495835 - B1_Mur2 SINE Alu -7 142 5 3 1722 267 304 200 0 chr4 149134529 149134644 -6495476 - L2 LINE L2 -777 2642 2505 3 1722 1141 99 47 0 chr4 149134921 149135092 -6495028 + B2_Mm1t SINE B2 1 179 -14 3 1722 696 211 20 39 chr4 149136106 149136302 -6493818 + B3 SINE B2 2 195 0 3 1722 324 297 0 0 chr4 149136321 149136395 -6493725 + RSINE1 SINE B4 4 77 -88 3 1722 292 180 16 47 chr4 149137083 149137147 -6492973 - PB1D10 SINE Alu -50 67 6 3 1722 1201 104 66 0 chr4 149137440 149137622 -6492498 - B2_Mm2 SINE B2 0 195 2 3 1722 614 131 17 34 chr4 149137626 149137745 -6492375 - URR1B DNA MER1_type 0 225 109 3 1722 360 224 81 101 chr4 149137746 149137895 -6492225 + B3A SINE B2 50 195 -3 3 1722 585 188 109 29 chr4 149137903 149138040 -6492080 - B1_Mus1 SINE Alu 0 148 1 3 1722 1575 38 16 0 chr4 149138076 149138261 -6491859 + B2_Mm2 SINE B2 2 189 -6 3 1722 353 322 0 40 chr4 149138416 149138515 -6491605 + B4A SINE B4 110 205 -87 3 1722 2321 81 17 70 chr4 149138515 149138673 -6491447 + ORR1A2 LTR MaLR 1 163 -164 3 1722 1063 122 0 0 chr4 149138673 149138820 -6491300 + B1_Mus1 SINE Alu 2 148 0 3 1722 2321 81 17 70 chr4 149138820 149139006 -6491114 + ORR1A2 LTR MaLR 164 327 0 3 1722 353 322 0 40 chr4 149139006 149139032 -6491088 + B4A SINE B4 206 230 -62 3 1722 257 371 42 17 chr4 149139482 149139600 -6490520 + MLT1K LTR MaLR 129 249 -346 3 1722 670 117 12 20 chr4 149139966 149140101 -6490019 - MT2C_Mm LTR ERVL -79 454 292 3 1722 29 28 0 0 chr4 149140232 149140268 -6489852 + AT_rich Low_complexity Low_complexity 1 36 0 3 1722 221 289 105 0 chr4 149140322 149140398 -6489722 - RSINE1 SINE B4 0 165 82 3 1722 348 24 0 0 chr4 149140399 149140440 -6489680 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1722 249 180 0 0 chr4 149140479 149140529 -6489591 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1722 387 60 0 0 chr4 149140568 149140618 -6489502 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1722 421 271 132 0 chr4 149140660 149140804 -6489316 - RSINE1 SINE B4 0 165 3 3 1722 475 239 140 7 chr4 149140833 149140976 -6489144 - RSINE1 SINE B4 -2 163 2 3 1722 1100 154 85 20 chr4 149141345 149141544 -6488576 + B3 SINE B2 3 214 -2 3 1722 5954 43 1 12 chr4 149141558 149142282 -6487838 - L1Md_F2 LINE L1 0 6582 5867 3 1722 1104 86 0 0 chr4 149142313 149142452 -6487668 + B1_Mm SINE Alu 1 139 -8 3 1722 852 177 0 7 chr4 149142751 149142893 -6487227 + B1_Mus2 SINE Alu 2 142 -5 3 1722 420 143 0 0 chr4 149142894 149142964 -6487156 + (GGA)n Simple_repeat Simple_repeat 3 72 0 3 1722 254 268 11 109 chr4 149143447 149143539 -6486581 - ID4_ SINE ID 0 83 1 3 1722 320 94 17 102 chr4 149143863 149143922 -6486198 - B1_Mur3 SINE Alu -13 136 83 3 1722 778 287 136 101 chr4 149143981 149144055 -6486065 + RMER19B LTR ERVK 1 72 -539 3 1722 1209 61 0 7 chr4 149144055 149144203 -6485917 + B1_Mus1 SINE Alu 2 148 0 3 1722 2419 187 93 39 chr4 149144203 149144776 -6485344 + RMER19B LTR ERVK 73 889 -13 3 1722 939 223 71 5 chr4 149144944 149145142 -6484978 + B3 SINE B2 1 211 -5 3 1722 564 216 28 11 chr4 149145478 149145605 -6484515 + B1F SINE Alu 1 128 -20 3 1722 1208 61 0 0 chr4 149145849 149145996 -6484124 + B1_Mus1 SINE Alu 2 148 0 3 1722 186 43 0 0 chr4 149146001 149146024 -6484096 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1722 409 183 235 51 chr4 149146136 149146234 -6483886 + PB1D9 SINE Alu 5 120 0 3 1722 409 239 58 25 chr4 149148630 149148667 -6481453 - B1_Mur3 SINE Alu 0 149 111 3 1722 790 152 13 33 chr4 149148667 149148817 -6481303 - B1_Mur1 SINE Alu -1 148 2 3 1722 474 199 1 1 chr4 149148817 149148900 -6481220 - B1F2 SINE Alu -39 110 25 3 1722 380 330 0 0 chr4 149148946 149149040 -6481080 - RSINE1 SINE B4 -10 155 62 3 1722 914 151 7 0 chr4 149149041 149149180 -6480940 - B1_Mus2 SINE Alu -2 145 6 3 1722 639 284 49 30 chr4 149149180 149149244 -6480876 - ID_B1 SINE B4 -3 221 15 3 1722 198 294 58 91 chr4 149149663 149149809 -6480311 + L2a LINE L2 3241 3393 -33 3 1722 251 73 0 47 chr4 149149940 149149983 -6480137 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 3 1722 457 239 71 147 chr4 149150634 149150648 -6479472 - B2_Mm2 SINE B2 0 195 182 3 1722 1246 61 0 0 chr4 149150648 149150796 -6479324 - B1_Mus1 SINE Alu 0 148 1 3 1722 704 239 71 147 chr4 149150796 149150992 -6479128 - B3 SINE B2 -14 181 1 3 1722 492 226 0 57 chr4 149151112 149151234 -6478886 - B1_Mur1 SINE Alu -3 146 32 3 1722 521 242 149 65 chr4 149152054 149152107 -6478013 + ID SINE ID 41 85 -139 3 1722 1225 145 14 42 chr4 149152107 149152318 -6477802 + B3 SINE B2 2 206 -10 3 1722 188 67 33 0 chr4 149152318 149152348 -6477772 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 3 1722 521 242 149 65 chr4 149152348 149152466 -6477654 + ID_B1 SINE B4 86 222 -2 3 1722 244 302 126 5 chr4 149152473 149152679 -6477441 + L1M4 LINE L1 3738 3968 -2178 3 1722 239 205 0 0 chr4 149152690 149152729 -6477391 + B4A SINE B4 85 123 -169 3 1722 1159 215 0 0 chr4 149152844 149153053 -6477067 - B3 SINE B2 -7 209 1 3 1722 1152 37 7 0 chr4 149153082 149153217 -6476903 - B1_Mus1 SINE Alu -11 137 2 3 1722 324 150 0 0 chr4 149153256 149153336 -6476784 + (CAGA)n Simple_repeat Simple_repeat 1 80 0 3 1722 345 273 45 0 chr4 149153703 149153791 -6476329 + PB1D10 SINE Alu 22 113 -4 3 1722 689 299 123 26 chr4 149154098 149154489 -6475631 + Lx8 LINE L1 7024 7452 -21 3 1722 290 273 73 0 chr4 149154802 149154912 -6475208 + L1MD LINE L1 4182 4299 -1847 3 1722 2143 160 43 41 chr4 149155322 149155643 -6474477 - MTC LTR MaLR 0 421 98 3 1722 369 0 0 0 chr4 149155643 149155684 -6474436 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1722 854 169 22 0 chr4 149155684 149155820 -6474300 - B1_Mur4 SINE Alu -11 139 1 3 1722 2143 160 43 41 chr4 149155820 149155914 -6474206 - MTC LTR MaLR -324 97 5 3 1722 727 289 9 28 chr4 149156025 149156312 -6473808 + ID_B1 SINE B4 37 224 0 3 1722 353 231 0 0 chr4 149156437 149156502 -6473618 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 3 1722 335 260 62 0 chr4 149156502 149156531 -6473589 + ID4_ SINE ID 6 109 -43 3 1722 531 45 0 0 chr4 149156755 149156821 -6473299 + (CAGG)n Simple_repeat Simple_repeat 1 66 0 3 1722 732 80 0 0 chr4 149157026 149157139 -6472981 + (TG)n Simple_repeat Simple_repeat 1 113 0 3 1722 633 240 86 7 chr4 149157713 149157864 -6472256 + B3 SINE B2 7 169 -47 3 1722 1150 107 83 22 chr4 149157927 149158108 -6472012 - B2_Mm2 SINE B2 -2 193 2 3 1722 851 167 14 55 chr4 149158214 149158360 -6471760 + B1_Mus1 SINE Alu 3 142 -6 3 1722 542 164 0 7 chr4 149158361 149158508 -6471612 + GA-rich Low_complexity Low_complexity 1 146 0 3 1722 230 325 95 91 chr4 149158670 149158880 -6471240 - MER46C DNA MER2_type -127 211 1 3 1722 245 321 0 0 chr4 149158985 149159041 -6471079 - ID4_ SINE ID -25 58 3 3 1722 750 295 73 94 chr4 149159160 149159448 -6470672 + B4A SINE B4 8 289 -3 3 1722 438 75 0 0 chr4 149159540 149159607 -6470513 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1722 216 0 0 0 chr4 149159607 149159630 -6470490 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 215 203 361 111 25 chr4 149159786 149159948 -6470172 + MIR SINE MIR 87 262 0 3 1723 2044 139 61 39 chr4 149160060 149160103 -6470017 - ORR1B1 LTR MaLR -8 386 348 3 1723 1320 72 0 102 chr4 149160103 149160131 -6469989 - B2_Mm2 SINE B2 -2 193 175 3 1723 1153 95 0 0 chr4 149160131 149160278 -6469842 + B1_Mus1 SINE Alu 2 148 0 3 1723 1320 72 0 102 chr4 149160278 149160464 -6469656 - B2_Mm2 SINE B2 -21 174 1 3 1723 2044 139 61 39 chr4 149160464 149160779 -6469341 - ORR1B1 LTR MaLR -47 347 20 3 1723 5240 104 31 7 chr4 149160753 149161527 -6468593 + ORR1A2-int LTR MaLR 1171 1963 0 3 1723 2602 65 9 0 chr4 149161528 149161851 -6468269 + ORR1A2 LTR MaLR 2 327 0 3 1723 249 83 0 0 chr4 149162047 149162083 -6468037 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 3 1723 811 251 57 5 chr4 149163312 149163524 -6466596 - ID_B1 SINE B4 0 224 2 3 1723 474 125 0 0 chr4 149164221 149164301 -6465819 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1723 531 198 452 10 chr4 149164312 149164511 -6465609 + B4A SINE B4 2 288 -4 3 1723 404 67 0 16 chr4 149164534 149164595 -6465525 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1723 310 335 38 24 chr4 149164802 149165013 -6465107 - L2b LINE L2 -239 3136 2923 3 1723 291 276 194 47 chr4 149165179 149165308 -6464812 + MLT2B1 LTR ERVL 1 148 -372 3 1723 326 149 118 26 chr4 149165309 149165385 -6464735 + RMER17C LTR ERVK 1 83 -327 3 1723 456 35 0 0 chr4 149165387 149165445 -6464675 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1723 261 0 0 0 chr4 149165445 149165473 -6464647 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1723 925 118 0 56 chr4 149165475 149165619 -6464501 - B1_Mus1 SINE Alu -12 136 1 3 1723 349 290 106 8 chr4 149166548 149166680 -6463440 - MLT1B LTR MaLR -81 309 165 3 1723 262 265 44 0 chr4 149166893 149166961 -6463159 - ID_B1 SINE B4 -8 216 146 3 1723 317 277 11 46 chr4 149167635 149167652 -6462468 - ID_B1 SINE B4 -59 165 82 3 1723 323 271 0 0 chr4 149167652 149167722 -6462398 - PB1D10 SINE Alu -47 70 1 3 1723 1271 82 16 16 chr4 149167725 149167910 -6462210 - B2_Mm2 SINE B2 -9 186 2 3 1723 573 15 0 0 chr4 149168031 149168097 -6462023 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1723 245 312 65 0 chr4 149168297 149168390 -6461730 - L1MC3 LINE L1 -1414 6371 6273 4 1723 266 73 24 0 chr4 149168482 149168523 -6461597 + (TTTTTA)n Simple_repeat Simple_repeat 5 46 0 4 1723 912 141 7 7 chr4 149168523 149168673 -6461447 - B1_Mur4 SINE Alu 0 150 1 4 1723 410 157 14 0 chr4 149168722 149168792 -6461328 - ID_B1 SINE B4 -2 222 152 4 1723 846 93 13 60 chr4 149168884 149169033 -6461087 + B1_Mus1 SINE Alu 6 147 -1 4 1723 208 147 0 0 chr4 149169046 149169080 -6461040 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1723 1161 48 7 0 chr4 149169464 149169610 -6460510 + B1_Mus1 SINE Alu 2 148 0 4 1723 1259 86 21 5 chr4 149169652 149169840 -6460280 - B2_Mm2 SINE B2 -3 192 2 4 1723 852 184 116 0 chr4 149169968 149170158 -6459962 + B3 SINE B2 1 212 -4 4 1723 775 167 33 0 chr4 149170177 149170256 -6459864 + ID SINE ID 1 84 -140 4 1723 338 217 53 70 chr4 149170256 149170370 -6459750 + PB1D10 SINE Alu 2 113 -4 4 1723 1176 254 46 46 chr4 149170731 149171227 -6458893 + L1MB7 LINE L1 5679 6174 -10 4 1723 195 129 0 0 chr4 149171260 149171291 -6458829 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 4 1723 626 226 120 26 chr4 149171638 149171829 -6458291 + B4 SINE B4 2 210 -82 4 1723 402 267 158 95 chr4 149171879 149172152 -6457968 + B4A SINE B4 1 290 -2 4 1723 1338 17 0 33 chr4 149172154 149172334 -6457786 + (GGGAGA)n Simple_repeat Simple_repeat 2 175 0 4 1723 31 0 0 0 chr4 149173517 149173548 -6456572 + AT_rich Low_complexity Low_complexity 1 31 0 4 1723 422 285 124 0 chr4 149173601 149173738 -6456382 - B3A SINE B2 -42 156 3 4 1723 201 39 0 0 chr4 149173851 149173877 -6456243 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1723 537 346 51 13 chr4 149173909 149174146 -6455974 - B4A SINE B4 -46 246 1 4 1723 810 88 181 7 chr4 149174606 149174755 -6455365 + B2_Mm2 SINE B2 1 175 -20 4 1723 192 135 0 0 chr4 149174774 149174811 -6455309 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 4 1723 366 258 45 9 chr4 149175069 149175218 -6454902 + L1MC LINE L1 3769 3936 -2210 4 1723 472 281 91 29 chr4 149175276 149175518 -6454602 + L1MC LINE L1 3914 4170 -1976 4 1723 706 109 0 16 chr4 149175521 149175642 -6454478 + (TCC)n Simple_repeat Simple_repeat 1 119 0 4 1723 690 246 60 83 chr4 149176179 149176551 -6453569 - RMER16 LTR ERVK 0 533 1 4 1723 245 213 0 0 chr4 149176568 149176615 -6453505 + RSINE1 SINE B4 4 50 -115 4 1723 2813 45 26 3 chr4 149176619 149177002 -6453118 + MTB LTR MaLR 9 400 0 4 1723 537 235 0 0 chr4 149177008 149177106 -6453014 + RSINE1 SINE B4 53 150 -15 4 1723 264 276 103 0 chr4 149177120 149177236 -6452884 + L1MC LINE L1 4340 4467 -1679 4 1723 244 75 24 48 chr4 149177285 149177327 -6452793 - MTD LTR MaLR -12 407 367 4 1723 823 244 6 16 chr4 149177308 149177491 -6452629 - MTD LTR MaLR -238 181 1 4 1723 515 206 19 0 chr4 149177677 149177784 -6452336 + PB1D10 SINE Alu 1 109 -8 4 1723 1152 205 46 15 chr4 149178250 149178513 -6451607 - ORR1B1 LTR MaLR -123 271 1 4 1723 933 96 7 0 chr4 149179301 149179437 -6450683 - B1_Mus2 SINE Alu -1 146 10 4 1723 1080 207 14 0 chr4 149179578 149179791 -6450329 - B3 SINE B2 0 216 1 4 1723 809 251 54 10 chr4 149179819 149180024 -6450096 + ID_B1 SINE B4 7 220 -4 4 1723 336 175 0 0 chr4 149180338 149180395 -6449725 - HAL1-3A_ME LINE L1 -828 2030 1974 4 1723 465 90 0 33 chr4 149180411 149180503 -6449617 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1723 374 305 67 62 chr4 149180504 149180682 -6449438 - B3A SINE B2 -11 205 27 4 1723 236 236 0 0 chr4 149181168 149181223 -6448897 - L1ME1 LINE L1 -15 6164 6110 4 1723 222 37 0 0 chr4 149181225 149181252 -6448868 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1723 301 340 99 35 chr4 149181487 149181801 -6448319 - L1MB5 LINE L1 -178 5996 5663 4 1723 567 169 132 0 chr4 149181857 149181993 -6448127 - RSINE1 SINE B4 -8 157 4 4 1723 608 217 70 0 chr4 149182034 149182177 -6447943 - RSINE1 SINE B4 -10 155 3 4 1723 412 272 22 14 chr4 149183462 149183600 -6446520 + CT-rich Low_complexity Low_complexity 3 141 0 4 1723 978 82 0 0 chr4 149183602 149183737 -6446383 - B1_Mus1 SINE Alu 0 148 14 4 1723 519 236 93 0 chr4 149183764 149183904 -6446216 - RSINE1 SINE B4 -10 155 3 4 1723 289 207 0 0 chr4 149183927 149183993 -6446127 - B1F1 SINE Alu -40 77 12 4 1723 527 186 66 96 chr4 149183994 149184161 -6445959 - ORR1D2 LTR MaLR 0 370 209 4 1723 718 232 105 81 chr4 149185275 149185533 -6444587 - ORR1D2 LTR MaLR -106 264 1 4 1723 2247 148 24 10 chr4 149185567 149185982 -6444138 - MTC LTR MaLR 0 421 1 4 1723 226 386 0 19 chr4 149186777 149186880 -6443240 + MER58B DNA MER1_type 6 106 -235 4 1723 280 307 74 50 chr4 149186917 149187103 -6443017 + MTEb LTR MaLR 1 205 -174 4 1723 234 211 35 0 chr4 149187112 149187169 -6442951 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1723 886 295 28 7 chr4 149187172 149187455 -6442665 - B4A SINE B4 -2 290 2 4 1723 196 328 30 15 chr4 149188254 149188387 -6441733 - L2c LINE L2 -230 3157 3023 4 1723 482 146 10 0 chr4 149188412 149188508 -6441612 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 1723 297 235 29 0 chr4 149188619 149188687 -6441433 + ID4_ SINE ID 3 72 -11 4 1723 328 247 0 110 chr4 149189578 149189678 -6440442 + RSINE1 SINE B4 52 140 -25 4 1723 450 216 25 41 chr4 149190143 149190264 -6439856 + L1MB5 LINE L1 6009 6127 -47 4 1723 1256 68 0 22 chr4 149190281 149190299 -6439821 - B2_Mm2 SINE B2 -19 176 162 4 1723 206 62 31 0 chr4 149190299 149190331 -6439789 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 1723 1256 68 0 22 chr4 149190331 149190491 -6439629 - B2_Mm2 SINE B2 -34 161 2 4 1723 385 225 38 0 chr4 149190520 149190600 -6439520 - ID4 SINE ID 0 83 1 4 1723 743 0 0 0 chr4 149191840 149191930 -6438190 + 5S rRNA rRNA 1 90 -31 4 1723 415 266 139 0 chr4 149192088 149192246 -6437874 + B3A SINE B2 3 182 -16 4 1723 835 145 5 15 chr4 149192246 149192451 -6437669 + (CA)n Simple_repeat Simple_repeat 1 202 0 4 1723 1162 89 0 22 chr4 149192451 149192635 -6437485 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1723 195 241 0 0 chr4 149192635 149192662 -6437458 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1723 1126 97 11 0 chr4 149192662 149192837 -6437283 + (CATA)n Simple_repeat Simple_repeat 2 178 0 4 1723 195 241 0 0 chr4 149192837 149192863 -6437257 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1723 923 233 5 18 chr4 149192882 149193101 -6437019 + B3 SINE B2 1 216 0 4 1723 228 207 106 16 chr4 149193158 149193281 -6436839 + RMER17D LTR ERVK 245 378 -511 4 1723 877 166 0 0 chr4 149193269 149193414 -6436706 - B1_Mur4 SINE Alu 0 150 6 4 1723 213 39 0 0 chr4 149193818 149193844 -6436276 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 4 1723 593 278 127 75 chr4 149194110 149194472 -6435648 + MLT1C LTR MaLR 70 450 -17 4 1723 222 35 0 0 chr4 149195195 149195224 -6434896 - MIR SINE MIR -68 140 112 4 1723 764 135 0 15 chr4 149195391 149195526 -6434594 + CT-rich Low_complexity Low_complexity 4 136 0 4 1723 772 152 76 0 chr4 149195537 149195669 -6434451 - B1_Mus1 SINE Alu -6 142 1 4 1723 900 206 20 15 chr4 149195688 149195885 -6434235 - B3A SINE B2 0 198 1 4 1723 765 106 0 0 chr4 149196058 149196171 -6433949 + (GA)n Simple_repeat Simple_repeat 2 114 0 4 1723 23 0 0 0 chr4 149196646 149196669 -6433451 + AT_rich Low_complexity Low_complexity 1 23 0 4 1723 262 308 39 58 chr4 149197171 149197326 -6432794 + B4A SINE B4 4 155 -137 4 1723 352 178 0 18 chr4 149197436 149197545 -6432575 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1723 571 142 11 33 chr4 149197558 149197740 -6432380 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1723 445 189 6 24 chr4 149197767 149197935 -6432185 + (CA)n Simple_repeat Simple_repeat 1 165 0 4 1723 351 123 18 0 chr4 149197968 149198025 -6432095 + HAL1-3A_ME LINE L1 1973 2030 -828 4 1723 2258 227 59 11 chr4 149198763 149199373 -6430747 + Lx9 LINE L1 7004 7642 -2 4 1723 554 246 6 0 chr4 149199426 149199593 -6430527 + (CA)n Simple_repeat Simple_repeat 2 169 0 4 1723 428 286 86 0 chr4 149199714 149199854 -6430266 + RSINE1 SINE B4 11 162 -3 4 1723 409 214 112 20 chr4 149200510 149200669 -6429451 - B3A SINE B2 -19 176 4 4 1723 426 280 38 8 chr4 149200674 149200807 -6429313 + MTD LTR MaLR 6 142 -277 4 1723 1723 172 150 0 chr4 149200809 149201175 -6428945 - MTC LTR MaLR 0 421 1 4 1723 637 143 0 0 chr4 149201177 149201289 -6428831 - MTC-int LTR MaLR -2 1256 1145 4 1723 853 69 0 0 chr4 149201293 149201409 -6428711 + B1_Mm SINE Alu 32 147 0 4 1723 568 171 111 0 chr4 149201443 149201560 -6428560 + B1_Mur4 SINE Alu 19 148 -2 4 1723 5826 152 57 28 chr4 149201552 149202688 -6427432 - MTC-int LTR MaLR -89 1169 1 4 1723 1798 199 21 26 chr4 149202688 149203065 -6427055 - MTC LTR MaLR 0 421 47 4 1723 321 89 0 0 chr4 149203065 149203110 -6427010 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 4 1723 540 209 159 23 chr4 149203110 149203242 -6426878 - B1_Mur4 SINE Alu 0 150 1 4 1723 677 45 0 11 chr4 149203258 149203348 -6426772 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 4 1723 1159 41 0 7 chr4 149203361 149203507 -6426613 - B1_Mm SINE Alu -1 146 2 4 1723 414 165 0 12 chr4 149203511 149203591 -6426529 - MTC LTR MaLR -342 79 1 4 1723 661 253 75 88 chr4 149203591 149203852 -6426268 + MTE2a LTR MaLR 116 372 -7 4 1723 531 256 6 55 chr4 149203955 149203977 -6426143 + ID_B1 SINE B4 68 222 0 4 1723 948 113 0 0 chr4 149203977 149204118 -6426002 + B1_Mur4 SINE Alu 10 150 0 4 1723 216 111 0 0 chr4 149205356 149205392 -6424728 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1723 711 286 94 70 chr4 149205432 149205495 -6424625 - B4A SINE B4 -2 290 232 4 1723 471 184 164 79 chr4 149205495 149205672 -6424448 - B3A SINE B2 -6 192 1 4 1723 711 286 94 70 chr4 149205672 149205864 -6424256 - B4A SINE B4 -61 231 29 4 1723 645 217 0 0 chr4 149205919 149206094 -6424026 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1723 346 267 50 0 chr4 149206131 149206232 -6423888 - MER81 DNA AcHobo -4 110 5 5 1723 366 307 42 30 chr4 149206874 149207042 -6423078 + L1MB7 LINE L1 5862 6031 -153 5 1723 270 0 0 0 chr4 149207042 149207072 -6423048 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1723 604 269 19 0 chr4 149207158 149207314 -6422806 - RSINE1 SINE B4 -4 161 3 5 1723 405 229 21 7 chr4 149207547 149207688 -6422432 + CT-rich Low_complexity Low_complexity 2 144 0 5 1723 249 256 79 34 chr4 149207789 149207878 -6422242 + Tigger5 DNA MER2_type 2314 2406 0 5 1723 877 258 15 5 chr4 149207955 149208154 -6421966 + B3 SINE B2 15 215 -1 5 1723 440 324 86 29 chr4 149208784 149209064 -6421056 + MLT1E2 LTR MaLR 214 509 -118 5 1723 1992 175 181 7 chr4 149209125 149209579 -6420541 - MT2A LTR ERVL 0 533 1 5 1723 303 226 131 0 chr4 149209590 149209674 -6420446 - PB1 SINE Alu -3 124 30 5 1723 391 303 88 34 chr4 149209605 149209752 -6420368 - ID_B1 SINE B4 -45 179 25 5 1723 823 324 28 9 chr4 149210045 149210366 -6419754 + L1MB7 LINE L1 5574 5900 -284 5 1723 313 309 116 46 chr4 149210722 149210895 -6419225 - Tigger5 DNA MER2_type -2166 240 56 5 1723 249 346 36 14 chr4 149211092 149211230 -6418890 + RMER15 LTR ERVL 324 464 -111 5 1723 1734 125 165 0 chr4 149211226 149211553 -6418567 - ORR1B1 LTR MaLR -13 381 1 5 1723 566 193 17 9 chr4 149211673 149211788 -6418332 - MTEa LTR MaLR -1 378 263 5 1723 255 298 12 12 chr4 149211801 149211886 -6418234 - MTEa LTR MaLR -294 85 1 5 1723 509 216 88 0 chr4 149213288 149213413 -6416707 + ID_B1 SINE B4 85 220 -4 5 1723 778 156 0 19 chr4 149213799 149214246 -6415874 + (TG)n Simple_repeat Simple_repeat 1 438 0 5 1723 348 167 0 0 chr4 149214424 149214496 -6415624 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1723 1838 69 54 0 chr4 149215549 149215810 -6414310 + ORR1A2 LTR MaLR 53 327 0 5 1723 286 258 0 15 chr4 149215812 149215879 -6414241 - B1F SINE Alu -42 107 42 5 1723 322 238 142 9 chr4 149215899 149216005 -6414115 + RSINE1 SINE B4 8 127 -38 5 1723 616 254 62 27 chr4 149216241 149216387 -6413733 + RSINE1 SINE B4 13 163 -2 5 1723 264 59 0 0 chr4 149216609 149216643 -6413477 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1723 521 278 201 50 chr4 149216647 149216731 -6413389 + L1MC1 LINE L1 5782 5864 -469 5 1723 581 271 0 7 chr4 149216731 149216872 -6413248 + B1_Mur1 SINE Alu 1 140 -9 5 1723 829 83 22 15 chr4 149216872 149217007 -6413113 + (GAGAA)n Simple_repeat Simple_repeat 4 139 0 5 1723 521 278 201 50 chr4 149217007 149217383 -6412737 + L1MC1 LINE L1 5865 6312 -21 5 1723 695 250 0 40 chr4 149217471 149217646 -6412474 + ID_B1 SINE B4 55 222 -2 5 1723 243 122 0 0 chr4 149217803 149217852 -6412268 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1723 531 0 0 0 chr4 149218216 149218275 -6411845 + (GGGGA)n Simple_repeat Simple_repeat 4 62 0 5 1723 245 220 17 17 chr4 149218376 149218436 -6411684 + CT-rich Low_complexity Low_complexity 2 61 0 5 1723 238 273 0 0 chr4 149218453 149218508 -6411612 - ID_B1 SINE B4 -81 143 89 5 1723 429 54 0 0 chr4 149218562 149218618 -6411502 + (TCC)n Simple_repeat Simple_repeat 2 57 0 5 1723 219 103 0 0 chr4 149218636 149218675 -6411445 + (TGG)n Simple_repeat Simple_repeat 3 41 0 5 1723 521 263 25 0 chr4 149218676 149218794 -6411326 - RSINE1 SINE B4 -35 130 10 5 1723 387 0 0 0 chr4 149219061 149219104 -6411016 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1723 552 182 0 0 chr4 149219463 149219595 -6410525 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1723 457 184 0 0 chr4 149220185 149220272 -6409848 - PB1D10 SINE Alu -1 116 30 5 1723 239 174 120 54 chr4 149220383 149220483 -6409637 + B1F2 SINE Alu 1 120 0 5 1723 330 262 107 0 chr4 149220545 149220648 -6409472 - ID_B1 SINE B4 -6 218 105 5 1723 678 262 29 105 chr4 149221862 149222071 -6408049 - B3A SINE B2 -1 194 2 5 1723 225 286 167 13 chr4 149222156 149222234 -6407886 + MIR SINE MIR 34 123 -139 5 1723 555 264 189 60 chr4 149222313 149222631 -6407489 - MLT1A0 LTR MaLR -6 359 1 5 1723 494 314 17 23 chr4 149222721 149222897 -6407223 + RMER30 DNA MER1_type 1 175 -27 5 1723 1254 196 5 0 chr4 149222962 149223176 -6406944 + B3 SINE B2 1 215 -1 5 1723 391 217 39 2 chr4 149223486 149223583 -6406537 - PB1D7 SINE Alu -46 103 4 5 1723 235 263 0 0 chr4 149223533 149223590 -6406530 - B4 SINE B4 -154 138 82 5 1723 602 247 176 11 chr4 149223783 149223837 -6406283 - ID_B1 SINE B4 0 224 172 5 1723 1976 171 144 3 chr4 149223837 149224206 -6405914 - MTC LTR MaLR 0 421 1 5 1723 602 247 176 11 chr4 149224206 149224339 -6405781 - ID_B1 SINE B4 -53 171 6 5 1723 799 362 23 3 chr4 149224735 149225040 -6405080 + L3 LINE CR1 3476 3786 -703 5 1723 730 283 142 17 chr4 149225042 149225337 -6404783 + L1M5 LINE L1 5384 5715 -409 5 1723 189 341 153 15 chr4 149225542 149225673 -6404447 - L2 LINE L2 -770 2649 2501 5 1723 227 342 54 77 chr4 149225677 149225937 -6404183 - L2 LINE L2 -1058 2361 2108 5 1723 330 277 106 69 chr4 149226441 149226658 -6403462 - RLTR42-int LTR ERVK -4141 1381 1157 5 1723 803 170 0 26 chr4 149226875 149227026 -6403094 - B1_Mur3 SINE Alu -2 147 1 5 1723 314 223 91 156 chr4 149227040 149227194 -6402926 - B3 SINE B2 -3 213 70 5 1723 1595 181 110 31 chr4 149227203 149227255 -6402865 + ORR1C2 LTR MaLR 3 53 -331 5 1723 1901 135 158 12 chr4 149227255 149227585 -6402535 - ORR1C1 LTR MaLR 0 378 1 5 1723 1595 181 110 31 chr4 149227585 149227886 -6402234 + ORR1C2 LTR MaLR 54 384 0 5 1723 346 111 0 0 chr4 149227900 149227954 -6402166 - B3A SINE B2 -144 54 1 5 1723 525 237 9 9 chr4 149227963 149228078 -6402042 - PB1D9 SINE Alu -1 119 5 5 1723 365 288 110 16 chr4 149227990 149228117 -6402003 - B4 SINE B4 -116 176 38 5 1723 1178 123 39 5 chr4 149228187 149228391 -6401729 - URR1A DNA MER1_type 0 226 16 5 1723 210 71 0 0 chr4 149228576 149228604 -6401516 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1723 626 242 153 7 chr4 149229628 149229903 -6400217 - Lx7 LINE L1 -12 7684 7370 5 1723 431 188 36 0 chr4 149230071 149230164 -6399956 + B1_Mur2 SINE Alu 54 149 0 5 1723 216 0 0 0 chr4 149230397 149230421 -6399699 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1723 189 277 0 0 chr4 149231067 149231114 -6399006 + L2b LINE L2 3309 3355 -20 5 1723 504 250 33 0 chr4 149231127 149231247 -6398873 + PB1 SINE Alu 4 127 0 5 1723 668 259 82 92 chr4 149231247 149231540 -6398580 + B4A SINE B4 1 290 -2 5 1723 270 0 0 0 chr4 149231578 149231608 -6398512 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1723 360 0 0 0 chr4 149231608 149231647 -6398473 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1723 229 322 44 11 chr4 149232378 149232469 -6397651 + MIR SINE MIR 31 124 -138 5 1723 282 203 0 59 chr4 149232601 149232669 -6397451 + ID_B1 SINE B4 161 224 0 5 1723 375 335 32 19 chr4 149232944 149233099 -6397021 - MLT1I LTR MaLR 0 411 255 5 1723 503 228 209 6 chr4 149233172 149233335 -6396785 - B3A SINE B2 -2 196 1 5 1723 720 298 70 0 chr4 149233335 149233563 -6396557 - B4A SINE B4 -44 248 5 5 1723 1180 74 0 0 chr4 149233740 149233888 -6396232 - B1_Mus1 SINE Alu 0 148 1 5 1723 476 282 26 0 chr4 149233960 149234077 -6396043 - B1F SINE Alu -29 120 1 5 1723 192 40 0 0 chr4 149234472 149234497 -6395623 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 5 1723 759 193 3 0 chr4 149234919 149235248 -6394872 + (TG)n Simple_repeat Simple_repeat 1 330 0 5 1723 505 227 9 18 chr4 149235248 149235360 -6394760 - B1_Mur1 SINE Alu -3 146 36 5 1723 241 277 93 78 chr4 149235273 149235402 -6394718 - MT2B LTR ERVL -325 276 146 5 1723 338 172 207 0 chr4 149235379 149235466 -6394654 - B3 SINE B2 -111 105 1 5 1723 502 315 14 14 chr4 149235554 149235699 -6394421 - B4A SINE B4 -147 145 1 5 1723 234 0 0 0 chr4 149236119 149236145 -6393975 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1723 314 322 93 27 chr4 149236149 149236299 -6393821 + MLT1K LTR MaLR 436 595 0 5 1723 631 301 43 5 chr4 149236394 149236581 -6393539 + B3A SINE B2 2 195 -3 5 1723 393 306 0 36 chr4 149236657 149236769 -6393351 + PB1 SINE Alu 17 124 -3 5 1723 2217 179 5 24 chr4 149236959 149237254 -6392866 - MTC LTR MaLR 0 421 126 5 1723 3092 50 43 20 chr4 149237254 149237645 -6392475 + MTB LTR MaLR 1 400 0 5 1723 2217 179 5 24 chr4 149237645 149237766 -6392354 - MTC LTR MaLR -296 125 13 5 1723 227 313 110 10 chr4 149237892 149237992 -6392128 + RMER5 LTR ERV1 425 534 0 5 1723 1057 224 98 117 chr4 149238064 149238474 -6391646 + MTD LTR MaLR 18 419 0 5 1723 665 264 26 88 chr4 149239673 149239901 -6390219 + B4 SINE B4 11 224 -68 5 1723 1094 259 64 21 chr4 149240019 149240346 -6389774 - MTEa LTR MaLR -36 343 3 5 1723 267 104 0 0 chr4 149240652 149240700 -6389420 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1723 303 127 89 18 chr4 149240735 149240791 -6389329 - B4 SINE B4 -209 83 24 5 1723 400 250 26 43 chr4 149240912 149241029 -6389091 - PB1D10 SINE Alu 0 117 3 5 1723 280 328 93 14 chr4 149241067 149241206 -6388914 - MLT1A1 LTR MaLR 0 408 259 5 1723 392 222 52 214 chr4 149241301 149241360 -6388760 - B2_Mm2 SINE B2 -3 192 144 5 1723 234 0 0 0 chr4 149241360 149241386 -6388734 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1723 504 212 198 158 chr4 149241386 149241555 -6388565 - B3 SINE B2 -38 178 3 5 1723 712 271 85 27 chr4 149241555 149241768 -6388352 - B4A SINE B4 -60 232 7 5 1723 203 189 0 0 chr4 149241899 149241936 -6388184 + A-rich Low_complexity Low_complexity 1 37 0 6 1723 25 0 0 0 chr4 149242075 149242100 -6388020 + AT_rich Low_complexity Low_complexity 1 25 0 6 1723 225 226 75 0 chr4 149242646 149242699 -6387421 + PB1D7 SINE Alu 64 120 0 6 1723 202 143 0 93 chr4 149243541 149243595 -6386525 + T-rich Low_complexity Low_complexity 5 53 0 6 1723 457 147 21 0 chr4 149243611 149243706 -6386414 + GA-rich Low_complexity Low_complexity 1 97 0 6 1723 747 183 8 0 chr4 149244411 149244542 -6385578 - B3 SINE B2 -62 154 23 6 1723 225 290 16 0 chr4 149244538 149244600 -6385520 + B4 SINE B4 164 226 -66 6 1723 1117 202 29 0 chr4 149244602 149244810 -6385310 + B3 SINE B2 2 215 -1 6 1723 429 282 86 0 chr4 149244885 149245002 -6385118 + B3 SINE B2 85 211 -5 6 1723 196 91 22 22 chr4 149245011 149245056 -6385064 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 6 1723 543 202 17 50 chr4 149245606 149245726 -6384394 + ID_B1 SINE B4 106 221 -3 6 1723 293 68 23 0 chr4 149245726 149245770 -6384350 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 6 1723 198 0 0 0 chr4 149246031 149246053 -6384067 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1723 537 260 11 17 chr4 149246152 149246328 -6383792 + G-rich Low_complexity Low_complexity 4 178 0 6 1723 306 0 0 0 chr4 149246625 149246659 -6383461 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1723 312 175 0 0 chr4 149246960 149247023 -6383097 + (TATG)n Simple_repeat Simple_repeat 3 65 0 6 1723 861 196 32 46 chr4 149247023 149247224 -6382896 - B2_Mm2 SINE B2 -13 203 1 6 1723 250 321 54 45 chr4 149247306 149247417 -6382703 + MIRc SINE MIR 48 159 -109 6 1723 210 300 61 24 chr4 149247551 149247633 -6382487 + L2a LINE L2 3340 3424 -2 6 1723 27 29 0 0 chr4 149248145 149248179 -6381941 + AT_rich Low_complexity Low_complexity 1 34 0 6 1723 487 188 196 0 chr4 149248207 149248319 -6381801 - RSINE1 SINE B4 -31 134 1 6 1723 3611 32 0 0 chr4 149253131 149253543 -6376577 - L1Md_A LINE L1 0 6582 6171 6 1723 252 337 230 16 chr4 149253932 149254119 -6376001 + MLT1D LTR MaLR 9 235 -270 6 1723 409 275 168 79 chr4 149254130 149254422 -6375698 + MLT1D LTR MaLR 182 499 -6 6 1723 675 251 39 135 chr4 149255047 149255328 -6374792 + B4 SINE B4 39 292 0 6 1723 558 192 0 0 chr4 149255328 149255484 -6374636 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 1723 765 168 0 0 chr4 149255499 149255678 -6374442 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1723 525 212 0 0 chr4 149255689 149255868 -6374252 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1723 333 121 0 33 chr4 149255869 149255929 -6374191 + HAL1-3A_ME LINE L1 1976 2033 -825 6 1723 285 312 110 18 chr4 149256369 149256532 -6373588 - MLT1C LTR MaLR -104 363 186 6 1723 303 276 40 95 chr4 149258376 149258606 -6371514 + MIRb SINE MIR 1 237 -31 6 1723 402 259 160 20 chr4 149258707 149258857 -6371263 + ID_B1 SINE B4 2 172 -52 6 1723 861 202 101 17 chr4 149258870 149259186 -6370934 + RMER10A LTR ERVL 19 385 -13 6 1723 274 170 0 0 chr4 149259194 149259241 -6370879 + ID_B1 SINE B4 177 223 -1 6 1723 1200 92 6 3 chr4 149261573 149261903 -6368217 + (TG)n Simple_repeat Simple_repeat 1 331 0 6 1723 459 221 0 10 chr4 149261938 149262034 -6368086 - B4A SINE B4 -2 290 196 6 1723 1114 108 222 0 chr4 149262045 149262230 -6367890 + URR1A DNA MER1_type 1 226 0 6 1723 473 147 29 0 chr4 149262684 149262786 -6367334 + (CACCAT)n Simple_repeat Simple_repeat 1 105 0 6 1723 411 21 0 0 chr4 149263461 149263509 -6366611 + (CGTG)n Simple_repeat Simple_repeat 2 49 0 6 1723 1029 60 0 0 chr4 149265862 149265995 -6364125 + (CAGAC)n Simple_repeat Simple_repeat 5 137 0 6 1723 294 29 0 0 chr4 149265995 149266030 -6364090 + (CCA)n Simple_repeat Simple_repeat 2 36 0 6 1723 198 0 0 0 chr4 149266030 149266052 -6364068 + (CAA)n Simple_repeat Simple_repeat 3 24 0 6 1723 404 162 170 9 chr4 149266348 149266460 -6363660 + L1MB5 LINE L1 5874 6003 -171 6 1723 714 114 22 38 chr4 149266473 149266656 -6363464 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1723 196 143 71 0 chr4 149266669 149266739 -6363381 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1723 303 319 37 0 chr4 149266756 149266891 -6363229 + L1MB5 LINE L1 6033 6172 -2 6 1723 588 224 0 0 chr4 149268859 149268975 -6361145 - ID_B1 SINE B4 -3 221 106 6 1723 461 248 108 0 chr4 149268862 149268991 -6361129 - B1F SINE Alu -6 143 1 6 1723 513 262 7 65 chr4 149269020 149269175 -6360945 - RSINE1 SINE B4 -6 159 14 6 1723 323 262 12 12 chr4 149269180 149269265 -6360855 - ID_B1 SINE B4 -130 94 10 6 1723 937 249 52 45 chr4 149269775 149270044 -6360076 - B4A SINE B4 -15 277 7 6 1723 21 36 0 0 chr4 149270841 149270869 -6359251 + AT_rich Low_complexity Low_complexity 1 28 0 6 1723 433 206 249 11 chr4 149270947 149271124 -6358996 - ID_B1 SINE B4 0 224 6 6 1723 799 252 78 71 chr4 149273085 149273354 -6356766 - B4 SINE B4 -4 288 18 6 1723 313 253 6 0 chr4 149273438 149273521 -6356599 + ID4_ SINE ID 21 105 -47 6 1723 922 222 29 2 chr4 149273691 149273910 -6356210 + B4 SINE B4 3 220 -72 6 1723 264 279 0 0 chr4 149273976 149274048 -6356072 + B4A SINE B4 2 73 -219 6 1723 847 158 2 16 chr4 149274069 149274523 -6355597 + (CA)n Simple_repeat Simple_repeat 1 447 0 6 1723 1037 81 17 50 chr4 149276062 149276243 -6353877 + B2_Mm2 SINE B2 3 177 -18 6 1723 695 296 40 28 chr4 149276239 149276486 -6353634 + B4A SINE B4 43 292 0 6 1723 395 209 12 0 chr4 149277196 149277282 -6352838 + MLT1C LTR MaLR 308 394 -73 6 1723 233 299 213 39 chr4 149277300 149277530 -6352590 + L2 LINE L2 1947 2216 -1203 6 1723 259 288 0 0 chr4 149277592 149277658 -6352462 - ID4 SINE ID -15 68 3 6 1723 198 333 156 9 chr4 149277754 149277972 -6352148 + L2 LINE L2 2466 2715 -704 6 1723 629 181 154 80 chr4 149278428 149278590 -6351530 + MTEb LTR MaLR 153 326 -53 6 1723 438 108 0 0 chr4 149278590 149278655 -6351465 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 6 1723 528 154 41 17 chr4 149280143 149280315 -6349805 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 6 1723 254 224 0 0 chr4 149282203 149282252 -6347868 + B4 SINE B4 2 50 -242 6 1723 398 280 78 29 chr4 149282361 149282514 -6347606 + MTD LTR MaLR 241 398 -21 6 1723 425 367 56 14 chr4 149282515 149282728 -6347392 - MER58A DNA MER1_type 0 224 3 6 1723 728 258 53 5 chr4 149283372 149283559 -6346561 + B3A SINE B2 3 198 0 6 1723 322 213 0 0 chr4 149283994 149284055 -6346065 - MER58D DNA MER1_type 0 386 326 6 1723 473 198 0 9 chr4 149285116 149285228 -6344892 + (TG)n Simple_repeat Simple_repeat 1 111 0 6 1723 819 181 0 0 chr4 149285988 149286100 -6344020 + (CA)n Simple_repeat Simple_repeat 2 113 0 6 1723 2925 49 0 3 chr4 149286100 149286447 -6343673 + ORR1A1 LTR MaLR 1 346 0 6 1723 819 181 0 0 chr4 149286447 149286511 -6343609 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1723 558 168 0 0 chr4 149286531 149286644 -6343476 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 1723 486 0 0 0 chr4 149290085 149290139 -6339981 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1723 485 325 24 24 chr4 149290150 149290314 -6339806 - B4A SINE B4 -128 164 1 6 1724 502 168 69 0 chr4 149291294 149291395 -6338725 + B1F SINE Alu 9 116 -33 6 1724 484 175 10 67 chr4 149291391 149291495 -6338625 + PB1D10 SINE Alu 19 116 -1 6 1724 550 274 91 22 chr4 149291577 149291808 -6338312 + L1MB5 LINE L1 5820 6066 -108 6 1724 380 20 20 0 chr4 149291812 149291861 -6338259 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1724 399 258 39 70 chr4 149291932 149292061 -6338059 + RSINE1 SINE B4 36 160 -5 6 1724 746 292 26 30 chr4 149292093 149292326 -6337794 + B4A SINE B4 2 233 -59 6 1724 260 265 179 17 chr4 149293328 149293501 -6336619 + MIRb SINE MIR 20 220 -48 6 1724 314 255 149 0 chr4 149293514 149293608 -6336512 + RSINE1 SINE B4 1 108 -57 6 1724 3154 136 78 17 chr4 149293625 149294164 -6335956 + RMER15 LTR ERVL 4 575 0 6 1724 1072 141 32 21 chr4 149295557 149295746 -6334374 + URR1B DNA MER1_type 35 225 0 6 1724 308 24 24 0 chr4 149297083 149297124 -6332996 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 6 1724 181 0 33 33 chr4 149298639 149298669 -6331451 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 6 1724 347 240 564 19 chr4 149298715 149298860 -6331260 + B4 SINE B4 2 226 -66 6 1724 668 254 0 0 chr4 149298860 149298998 -6331122 + RSINE1 SINE B4 2 139 -26 6 1724 324 0 0 0 chr4 149298998 149299034 -6331086 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1724 560 177 115 0 chr4 149299058 149299171 -6330949 + B1_Mur2 SINE Alu 3 128 -21 6 1724 278 106 0 21 chr4 149299173 149299221 -6330899 + (AGGGGG)n Simple_repeat Simple_repeat 6 52 0 6 1724 266 0 0 29 chr4 149299241 149299276 -6330844 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1724 780 243 31 26 chr4 149299700 149299894 -6330226 + B3A SINE B2 1 195 -3 6 1724 1106 243 49 104 chr4 149300022 149300200 -6329920 - MTEb LTR MaLR -14 365 221 6 1724 432 0 0 0 chr4 149300200 149300248 -6329872 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1724 1106 243 49 104 chr4 149300248 149300286 -6329834 - MTEb LTR MaLR -159 220 185 6 1724 408 340 7 7 chr4 149300286 149300437 -6329683 - RSINE1 SINE B4 -13 152 2 6 1724 1106 243 49 104 chr4 149300437 149300605 -6329515 - MTEb LTR MaLR -195 184 2 6 1724 4563 258 148 26 chr4 149300605 149302013 -6328107 - MTEb-int LTR MaLR 0 1580 1 6 1724 1463 235 75 9 chr4 149302017 149302364 -6327756 - MTEb LTR MaLR -8 371 2 6 1724 757 240 93 112 chr4 149302454 149302793 -6327327 + L1MB3 LINE L1 5777 6124 -59 6 1724 497 297 19 19 chr4 149302793 149302954 -6327166 - RSINE1 SINE B4 -1 164 4 6 1724 757 240 93 112 chr4 149302954 149302979 -6327141 + L1MB3 LINE L1 6125 6138 -45 6 1724 248 286 0 54 chr4 149302979 149303053 -6327067 + ID2 SINE ID 1 70 -13 6 1724 757 240 93 112 chr4 149303053 149303096 -6327024 + L1MB3 LINE L1 6139 6177 -6 6 1724 365 299 104 7 chr4 149303708 149303843 -6326277 + B1F SINE Alu 1 148 -1 6 1724 513 0 0 0 chr4 149304497 149304554 -6325566 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1724 225 267 73 37 chr4 149304558 149304667 -6325453 + L1M5 LINE L1 5353 5465 -775 6 1724 324 0 0 0 chr4 149304924 149304960 -6325160 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 6 1724 402 21 0 0 chr4 149305349 149305396 -6324724 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1724 555 16 0 0 chr4 149307588 149307652 -6322468 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1724 1179 262 14 17 chr4 149307654 149307941 -6322179 - B4A SINE B4 -2 290 5 7 1724 217 306 139 0 chr4 149308801 149308909 -6321211 + L2a LINE L2 3298 3420 -6 7 1724 198 0 0 0 chr4 149310158 149310180 -6319940 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 7 1724 368 268 0 0 chr4 149310310 149310392 -6319728 + RSINE1 SINE B4 48 129 -36 7 1724 471 163 0 0 chr4 149310398 149310521 -6319599 + CT-rich Low_complexity Low_complexity 1 123 0 7 1724 305 380 12 6 chr4 149311866 149312033 -6318087 + MIRb SINE MIR 91 258 -10 7 1724 189 132 0 0 chr4 149312848 149312886 -6317234 + (C)n Simple_repeat Simple_repeat 1 38 0 7 1724 215 156 0 22 chr4 149313122 149313168 -6316952 + T-rich Low_complexity Low_complexity 3 47 0 7 1724 344 233 89 0 chr4 149314661 149314751 -6315369 - PB1D7 SINE Alu -5 115 18 7 1724 441 0 0 0 chr4 149315924 149315973 -6314147 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1724 396 91 0 0 chr4 149316941 149317007 -6313113 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1724 234 0 0 0 chr4 149317740 149317766 -6312354 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1724 324 0 0 0 chr4 149318246 149318282 -6311838 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1724 556 288 35 29 chr4 149321729 149321901 -6308219 + ID_B1 SINE B4 4 176 -48 7 1724 314 339 42 0 chr4 149321992 149322110 -6308010 - ERVL-B4-int LTR ERVL -1564 4150 4028 7 1724 6788 268 89 25 chr4 149322141 149324569 -6305551 - ERVL-B4-int LTR ERVL -2210 3504 921 7 1724 806 274 127 15 chr4 149324681 149324948 -6305172 + MTEa LTR MaLR 3 299 -80 7 1724 531 151 0 0 chr4 149324964 149325057 -6305063 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1724 537 132 22 11 chr4 149326033 149326125 -6303995 + B2_Mm2 SINE B2 6 98 -97 7 1724 201 261 0 30 chr4 149326233 149326300 -6303820 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1724 235 182 185 49 chr4 149327309 149327390 -6302730 + MIR3 SINE MIR 78 169 -39 7 1724 738 23 0 0 chr4 149327578 149327666 -6302454 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 1724 291 54 0 0 chr4 149327669 149327706 -6302414 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1724 214 360 6 44 chr4 149329203 149329386 -6300734 + (CCCCG)n Simple_repeat Simple_repeat 4 179 0 7 1724 1445 78 16 5 chr4 149330657 149330849 -6299271 + B2_Mm2 SINE B2 1 194 -1 7 1724 949 41 0 0 chr4 149331857 149331980 -6298140 + B1_Mus1 SINE Alu 26 148 0 7 1724 330 26 0 0 chr4 149331980 149332019 -6298101 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1724 643 266 0 0 chr4 149333073 149333212 -6296908 + ID_B1 SINE B4 68 206 -18 7 1724 1005 251 0 27 chr4 149333299 149333520 -6296600 - B3 SINE B2 -1 215 1 7 1724 186 143 0 0 chr4 149333777 149333812 -6296308 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1724 679 257 57 31 chr4 149333859 149334052 -6296068 - Lx8 LINE L1 -333 7140 6943 7 1724 460 189 93 9 chr4 149335159 149335266 -6294854 + PB1D10 SINE Alu 2 117 0 7 1724 250 224 35 0 chr4 149335366 149335424 -6294696 - MIR SINE MIR -181 81 22 7 1724 338 311 66 16 chr4 149335425 149335546 -6294574 - MTEb LTR MaLR -2 377 251 7 1724 4446 14 0 0 chr4 149335547 149336029 -6294091 - LTRIS_Mm LTR ERV1 0 482 1 7 1724 270 0 0 0 chr4 149336070 149336100 -6294020 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1724 1118 103 0 0 chr4 149336100 149336246 -6293874 + B1_Mus1 SINE Alu 2 147 -1 7 1724 467 216 137 50 chr4 149336499 149336660 -6293460 + B3A SINE B2 1 175 -20 7 1724 1292 94 10 59 chr4 149336661 149336820 -6293300 + B2_Mm1a SINE B2 1 160 -33 7 1724 387 0 0 0 chr4 149336820 149336863 -6293257 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 1724 1292 94 10 59 chr4 149336863 149336906 -6293214 + B2_Mm1a SINE B2 161 193 0 7 1724 43 0 0 0 chr4 149336919 149336962 -6293158 + AT_rich Low_complexity Low_complexity 1 43 0 7 1724 385 272 78 103 chr4 149337274 149337390 -6292730 - MLT1A0 LTR MaLR -25 383 227 7 1724 1923 192 85 10 chr4 149337390 149337780 -6292340 - MTD LTR MaLR 0 419 1 7 1724 385 262 42 116 chr4 149337780 149337883 -6292237 - MLT1A0 LTR MaLR -139 226 138 7 1724 624 241 44 0 chr4 149339343 149339480 -6290640 + ID_B1 SINE B4 82 224 0 7 1724 408 248 141 0 chr4 149339487 149339608 -6290512 + RSINE1 SINE B4 3 140 -25 7 1724 296 324 59 0 chr4 149339918 149340054 -6290066 + L2b LINE L2 3213 3356 -19 7 1724 306 336 52 0 chr4 149340235 149340351 -6289769 - MIRc SINE MIR -102 166 45 7 1724 222 37 0 0 chr4 149341471 149341498 -6288622 + (TTA)n Simple_repeat Simple_repeat 1 27 0 7 1724 260 339 64 32 chr4 149341503 149341628 -6288492 - RSINE1 SINE B4 -36 129 1 7 1724 513 254 259 6 chr4 149342048 149342222 -6287898 + ID_B1 SINE B4 5 222 -2 7 1724 1163 62 21 0 chr4 149342226 149342371 -6287749 + B1_Mus1 SINE Alu 1 148 0 7 1724 307 272 38 53 chr4 149342401 149342533 -6287587 + L1MD LINE L1 3081 3210 -2936 7 1724 29 28 0 0 chr4 149342579 149342615 -6287505 + AT_rich Low_complexity Low_complexity 1 36 0 7 1724 4535 133 65 53 chr4 149343490 149344436 -6285684 + RMER17B LTR ERVK 1 958 0 7 1724 415 205 13 0 chr4 149345168 149345246 -6284874 + RSINE1 SINE B4 46 124 -41 7 1724 315 0 0 0 chr4 149345255 149345290 -6284830 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1724 751 191 57 0 chr4 149345322 149345463 -6284657 + B1_Mur2 SINE Alu 1 149 0 7 1724 314 280 20 20 chr4 149345485 149345587 -6284533 + L1_Mur3 LINE L1 4441 4542 -1338 7 1724 2380 179 19 81 chr4 149345602 149346118 -6284002 + RLTR18B LTR ERVK 25 508 -4 7 1724 835 179 14 20 chr4 149346159 149346307 -6283813 - B1_Mur2 SINE Alu -2 147 1 7 1724 292 224 54 36 chr4 149346313 149346334 -6283786 + L1M3 LINE L1 4609 4630 -1513 7 1724 188 0 74 0 chr4 149346334 149346361 -6283759 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1724 331 205 1 46 chr4 149346361 149346450 -6283670 + L1M3 LINE L1 4631 4720 -1423 7 1724 746 344 76 32 chr4 149346450 149347096 -6283024 + Lx LINE L1 4748 5421 -426 7 1724 2297 129 108 3 chr4 149347107 149347488 -6282632 - MTC LTR MaLR 0 421 1 7 1724 422 244 78 121 chr4 149347496 149347650 -6282470 + Lx8 LINE L1 7192 7347 -126 7 1724 1121 195 19 14 chr4 149347650 149347863 -6282257 + B3 SINE B2 2 215 -1 7 1724 422 244 78 121 chr4 149347863 149347964 -6282156 + Lx8 LINE L1 7348 7436 -37 7 1724 1126 294 24 59 chr4 149348012 149348534 -6281586 + Lx LINE L1 5429 5964 -690 7 1724 207 0 0 0 chr4 149348606 149348629 -6281491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1724 22 35 0 0 chr4 149348721 149348750 -6281370 + AT_rich Low_complexity Low_complexity 1 29 0 7 1724 732 121 0 0 chr4 149348761 149348893 -6281227 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1724 292 113 0 51 chr4 149348907 149348969 -6281151 - MTC LTR MaLR -339 68 8 7 1724 225 83 0 100 chr4 149349195 149349235 -6280885 - MurSatRep1 Unknown Unknown -1877 260 225 7 1724 191 95 48 0 chr4 149349910 149349952 -6280168 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 7 1724 495 264 204 0 chr4 149349958 149350125 -6279995 - ID_B1 SINE B4 -18 206 6 7 1724 724 204 26 23 chr4 149350126 149350242 -6279878 + RMER17C LTR ERVK 1 103 -307 7 1724 1163 107 6 0 chr4 149350242 149350420 -6279700 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 7 1724 724 204 26 23 chr4 149350420 149350583 -6279537 + RMER17C LTR ERVK 104 251 -159 7 1724 393 75 0 0 chr4 149350599 149350652 -6279468 + (TCC)n Simple_repeat Simple_repeat 3 55 0 7 1724 1080 201 43 28 chr4 149350652 149350974 -6279146 + RMER17C LTR ERVK 84 410 0 7 1724 1033 104 227 17 chr4 149352643 149352819 -6277301 + B3 SINE B2 1 213 -3 7 1724 23 33 0 0 chr4 149353603 149353633 -6276487 + AT_rich Low_complexity Low_complexity 1 30 0 7 1724 180 0 0 0 chr4 149357265 149357285 -6272835 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 7 1724 300 219 0 19 chr4 149359983 149360078 -6270042 + B3A SINE B2 1 91 -125 7 1724 269 244 39 0 chr4 149360273 149360351 -6269769 + ID2 SINE ID 3 83 0 7 1724 228 100 0 0 chr4 149360354 149360394 -6269726 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1724 403 303 144 15 chr4 149360490 149360691 -6269429 + B4A SINE B4 3 229 -63 7 1724 489 333 12 0 chr4 149360871 149361033 -6269087 + RSINE1 SINE B4 2 165 0 7 1724 828 192 96 6 chr4 149361436 149361614 -6268506 + B3A SINE B2 5 198 0 7 1724 946 162 7 0 chr4 149361618 149361766 -6268354 + B1_Mur1 SINE Alu 1 149 0 7 1724 661 176 0 38 chr4 149361766 149361784 -6268336 + (TA)n Simple_repeat Simple_repeat 1 17 0 7 1724 2345 118 12 0 chr4 149361784 149362107 -6268013 + ORR1A2 LTR MaLR 1 327 0 7 1724 661 176 0 38 chr4 149362107 149362271 -6267849 + (TA)n Simple_repeat Simple_repeat 1 158 0 7 1724 1037 172 5 11 chr4 149362280 149362468 -6267652 + B3 SINE B2 30 216 0 7 1724 185 229 20 20 chr4 149362526 149362575 -6267545 - L3 LINE CR1 -1907 2582 2534 7 1724 234 0 0 0 chr4 149364133 149364159 -6265961 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 7 1724 464 48 16 0 chr4 149364279 149364342 -6265778 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 1724 501 232 0 51 chr4 149365773 149365891 -6264229 + B1F SINE Alu 9 120 -29 7 1724 246 32 0 0 chr4 149365898 149365929 -6264191 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1724 898 227 64 5 chr4 149367247 149367451 -6262669 + B3 SINE B2 1 216 0 7 1724 507 272 43 25 chr4 149367479 149367641 -6262479 + RSINE1 SINE B4 1 165 0 7 1724 498 240 0 0 chr4 149368096 149368200 -6261920 + ID_B1 SINE B4 113 216 -8 7 1724 333 125 0 0 chr4 149368202 149368258 -6261862 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1724 277 303 13 0 chr4 149368894 149368970 -6261150 + ID4_ SINE ID 5 81 -2 7 1724 26 0 0 0 chr4 149369467 149369493 -6260627 + AT_rich Low_complexity Low_complexity 1 26 0 8 1724 349 214 281 67 chr4 149371043 149371178 -6258942 + RSINE1 SINE B4 2 165 0 8 1724 466 315 26 61 chr4 149371208 149371301 -6258819 + ID_B1 SINE B4 1 222 -2 8 1724 536 263 36 0 chr4 149371301 149371438 -6258682 + B1F1 SINE Alu 7 148 -1 8 1724 715 187 226 6 chr4 149371443 149371620 -6258500 + B3 SINE B2 1 216 0 8 1724 679 162 76 15 chr4 149371644 149371776 -6258344 + B1_Mur3 SINE Alu 1 140 -9 8 1724 293 352 64 0 chr4 149371870 149371995 -6258125 + MIR SINE MIR 93 225 -37 8 1724 194 236 18 0 chr4 149372550 149372605 -6257515 - MIR SINE MIR -126 136 81 8 1724 567 158 39 10 chr4 149372661 149372763 -6257357 - PB1D7 SINE Alu -2 118 14 8 1724 339 239 10 42 chr4 149372681 149372777 -6257343 - ID_B1 SINE B4 -52 172 80 8 1724 276 298 12 0 chr4 149373562 149373646 -6256474 - MER5A1 DNA MER1_type -8 158 74 8 1724 385 175 125 0 chr4 149373748 149373828 -6256292 + B3 SINE B2 10 99 -117 8 1724 573 242 68 0 chr4 149374242 149374374 -6255746 + B1F SINE Alu 1 141 -8 8 1724 238 221 19 17 chr4 149374389 149374457 -6255663 + ID4 SINE ID 2 70 -13 8 1724 276 319 0 0 chr4 149374553 149374622 -6255498 + B1F SINE Alu 1 69 -80 8 1724 192 175 48 0 chr4 149374708 149374771 -6255349 + CT-rich Low_complexity Low_complexity 1 66 0 8 1724 389 235 128 64 chr4 149374796 149374937 -6255183 + RSINE1 SINE B4 10 159 -6 8 1724 220 327 17 68 chr4 149375016 149375134 -6254986 + PB1D10 SINE Alu 3 114 -3 8 1724 200 149 21 0 chr4 149375134 149375181 -6254939 + GA-rich Low_complexity Low_complexity 1 48 0 8 1724 332 143 29 0 chr4 149375949 149376019 -6254101 + B1_Mus2 SINE Alu 76 147 0 8 1724 437 238 75 9 chr4 149376099 149376205 -6253915 + PB1D10 SINE Alu 5 117 0 8 1724 412 223 426 0 chr4 149376229 149376377 -6253743 + B3 SINE B2 1 211 -5 8 1724 1122 111 192 6 chr4 149376842 149377024 -6253096 + B3 SINE B2 1 216 0 8 1724 687 243 11 6 chr4 149377337 149377511 -6252609 + MER63D DNA AcHobo 43 217 -844 8 1724 365 321 0 0 chr4 149377846 149377958 -6252162 - PB1D10 SINE Alu 0 117 6 8 1724 381 284 10 0 chr4 149378090 149378192 -6251928 + RSINE1 SINE B4 31 133 -32 8 1724 636 70 0 0 chr4 149378192 149378278 -6251842 + (CA)n Simple_repeat Simple_repeat 1 86 0 8 1724 299 314 89 69 chr4 149378507 149378706 -6251414 + L2a LINE L2 3022 3227 -199 8 1724 762 69 0 0 chr4 149378706 149378807 -6251313 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 8 1724 794 236 61 103 chr4 149378807 149378877 -6251243 - ID_B1 SINE B4 -19 205 152 8 1724 1090 164 45 25 chr4 149378877 149379077 -6251043 - B3 SINE B2 -8 208 5 8 1724 794 236 61 103 chr4 149379077 149379219 -6250901 - ID_B1 SINE B4 -73 151 2 8 1724 299 314 89 69 chr4 149379219 149379322 -6250798 + L2a LINE L2 3228 3330 -96 8 1724 208 362 86 0 chr4 149379586 149379792 -6250328 - MIRb SINE MIR -13 255 21 8 1724 799 205 106 0 chr4 149379819 149379980 -6250140 + B3A SINE B2 3 180 -18 8 1724 264 304 13 0 chr4 149380696 149380775 -6249345 + PB1D10 SINE Alu 37 116 -1 8 1724 662 214 56 152 chr4 149380778 149381009 -6249111 + B3 SINE B2 2 210 -6 8 1724 231 133 0 0 chr4 149381034 149381079 -6249041 + (AGGGGG)n Simple_repeat Simple_repeat 5 49 0 8 1724 464 267 99 33 chr4 149381084 149381244 -6248876 + B3A SINE B2 5 181 -17 8 1724 939 240 44 0 chr4 149381244 149381448 -6248672 + B3 SINE B2 1 213 -3 8 1724 464 267 99 33 chr4 149381448 149381469 -6248651 + B3A SINE B2 182 198 0 8 1724 220 329 82 0 chr4 149381489 149381562 -6248558 + ID4_ SINE ID 4 82 -1 8 1724 315 276 9 37 chr4 149381823 149381932 -6248188 - PB1D10 SINE Alu -2 115 10 8 1724 204 40 0 0 chr4 149382033 149382058 -6248062 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 8 1724 496 196 50 59 chr4 149382102 149382221 -6247899 - B1_Mur1 SINE Alu -19 130 13 8 1724 306 257 57 74 chr4 149382114 149382236 -6247884 - B4 SINE B4 -91 201 82 8 1724 201 108 0 0 chr4 149385085 149385122 -6244998 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1724 342 254 192 69 chr4 149385123 149385196 -6244924 - B4A SINE B4 0 292 227 8 1724 972 229 53 5 chr4 149385196 149385402 -6244718 - B3 SINE B2 0 216 1 8 1724 342 254 192 69 chr4 149385402 149385531 -6244589 - B4A SINE B4 -66 226 65 8 1724 1645 41 0 10 chr4 149385633 149385828 -6244292 - B2_Mm1a SINE B2 0 193 1 8 1724 323 323 153 19 chr4 149386641 149386903 -6243217 - MLT1E2 LTR MaLR -221 406 110 8 1724 551 215 0 18 chr4 149386919 149387028 -6243092 - B1_Mur1 SINE Alu -41 108 2 8 1724 788 246 14 55 chr4 149387057 149387276 -6242844 - B3 SINE B2 -6 210 1 8 1724 509 316 119 12 chr4 149387322 149387695 -6242425 - L1M4 LINE L1 -440 5738 5319 8 1724 479 229 59 91 chr4 149387706 149387893 -6242227 - B3A SINE B2 -15 183 3 8 1724 1624 206 115 6 chr4 149387982 149388348 -6241772 - MTD LTR MaLR -1 418 13 8 1724 532 219 17 0 chr4 149388349 149388468 -6241652 + HAL1-2a_MD LINE L1 2365 2485 -539 8 1724 228 143 0 0 chr4 149388470 149388512 -6241608 + (CAA)n Simple_repeat Simple_repeat 2 43 0 8 1724 402 21 0 0 chr4 149388510 149388557 -6241563 + (CTA)n Simple_repeat Simple_repeat 3 49 0 8 1724 836 235 44 20 chr4 149388563 149388767 -6241353 - ID_B1 SINE B4 -15 209 1 8 1724 684 235 17 29 chr4 149388783 149388958 -6241162 - L1M4 LINE L1 -913 5233 5061 8 1724 300 303 11 11 chr4 149388958 149389048 -6241072 - ID4 SINE ID -61 91 2 8 1724 271 275 11 130 chr4 149388968 149389060 -6241060 - ID SINE ID -142 82 2 8 1724 395 226 28 19 chr4 149390713 149390821 -6239299 + B1F SINE Alu 40 148 -1 8 1724 923 241 52 0 chr4 149390828 149391040 -6239080 + ID_B1 SINE B4 2 224 0 8 1724 411 265 40 120 chr4 149391170 149391191 -6238929 + B4 SINE B4 77 214 -78 8 1724 755 164 0 8 chr4 149391191 149391320 -6238800 + B1_Mus1 SINE Alu 9 136 -12 8 1724 315 0 0 0 chr4 149391321 149391356 -6238764 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 8 1724 225 271 0 0 chr4 149391364 149391412 -6238708 + ID4_ SINE ID 1 48 -35 8 1724 439 224 61 0 chr4 149391448 149391613 -6238507 + (TATG)n Simple_repeat Simple_repeat 3 177 0 8 1724 399 230 62 0 chr4 149391627 149391788 -6238332 + (TATG)n Simple_repeat Simple_repeat 3 173 0 8 1724 598 213 55 34 chr4 149391946 149392092 -6238028 + B1_Mur3 SINE Alu 1 149 0 8 1724 298 284 64 43 chr4 149392669 149392809 -6237311 - MER74A LTR ERVL -388 170 28 8 1724 832 207 173 0 chr4 149392937 149393116 -6237004 + B3 SINE B2 1 210 -6 8 1724 476 177 29 11 chr4 149393224 149393336 -6236784 - B1F SINE Alu -2 118 4 8 1724 259 304 75 11 chr4 149393378 149393471 -6236649 - PB1D10 SINE Alu -18 99 1 8 1724 288 183 67 89 chr4 149393654 149393744 -6236376 + RLTR25B LTR ERVK 422 509 -519 8 1724 710 69 10 10 chr4 149393678 149393773 -6236347 + B1_Mus1 SINE Alu 39 134 -14 8 1724 654 13 0 0 chr4 149393773 149393848 -6236272 + (GA)n Simple_repeat Simple_repeat 1 75 0 8 1724 1231 234 132 15 chr4 149393854 149394188 -6235932 + MTD LTR MaLR 47 419 0 8 1724 554 31 82 0 chr4 149394673 149394770 -6235350 + (TTTTG)n Simple_repeat Simple_repeat 1 105 0 8 1724 1246 54 0 0 chr4 149394770 149394917 -6235203 - B1_Mm SINE Alu 0 147 1 8 1724 219 217 0 0 chr4 149395098 149395144 -6234976 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 8 1724 261 194 66 53 chr4 149395285 149395361 -6234759 + B4 SINE B4 201 277 -15 8 1724 284 207 0 33 chr4 149395336 149395396 -6234724 + RSINE1 SINE B4 108 165 0 8 1724 414 177 110 8 chr4 149395414 149395533 -6234587 - B1_Mus1 SINE Alu 0 117 2 8 1724 1368 95 5 21 chr4 149395649 149395843 -6234277 + B2_Mm2 SINE B2 5 195 0 8 1724 435 145 0 0 chr4 149395843 149395898 -6234222 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 8 1724 1473 73 11 0 chr4 149395898 149396089 -6234031 + B2_Mm1t SINE B2 1 193 0 8 1724 435 145 0 0 chr4 149396089 149396109 -6234011 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 8 1724 513 0 0 0 chr4 149396874 149396931 -6233189 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1724 669 234 57 11 chr4 149397003 149397180 -6232940 - B3 SINE B2 -11 205 21 8 1724 289 280 29 29 chr4 149397181 149397317 -6232803 - L1M3 LINE L1 -573 5607 5472 8 1724 368 232 14 0 chr4 149397327 149397396 -6232724 - ID4 SINE ID -9 74 5 8 1724 622 205 0 57 chr4 149397396 149397520 -6232600 + PB1D10 SINE Alu 1 117 0 8 1724 258 136 0 0 chr4 149397612 149397656 -6232464 + (TAA)n Simple_repeat Simple_repeat 2 45 0 8 1724 37 62 0 0 chr4 149397665 149397730 -6232390 + AT_rich Low_complexity Low_complexity 1 65 0 8 1724 1031 52 0 0 chr4 149398106 149398242 -6231878 + B1_Mus2 SINE Alu 12 147 0 8 1724 237 132 0 0 chr4 149398242 149398280 -6231840 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1724 31 26 0 0 chr4 149398683 149398721 -6231399 + AT_rich Low_complexity Low_complexity 1 38 0 8 1724 538 252 50 7 chr4 149398761 149398901 -6231219 - RSINE1 SINE B4 -14 151 6 8 1724 1449 75 11 0 chr4 149398903 149399091 -6231029 - B2_Mm1t SINE B2 -3 190 1 8 1724 332 306 36 13 chr4 149399299 149399451 -6230669 + MLT1C LTR MaLR 268 450 -17 8 1724 321 155 0 0 chr4 149401375 149401433 -6228687 + GA-rich Low_complexity Low_complexity 1 58 0 8 1724 806 272 20 0 chr4 149401916 149402118 -6228002 + B3 SINE B2 1 206 -10 8 1724 21 0 0 0 chr4 149404240 149404261 -6225859 + AT_rich Low_complexity Low_complexity 1 21 0 9 1724 252 0 0 0 chr4 149404396 149404424 -6225696 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1724 225 65 0 0 chr4 149406146 149406177 -6223943 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1724 351 0 0 0 chr4 149407057 149407096 -6223024 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 1724 262 280 56 63 chr4 149409216 149409342 -6220778 - MIR3 SINE MIR -40 168 44 9 1724 479 267 78 0 chr4 149410704 149410820 -6219300 - RSINE1 SINE B4 -40 125 1 9 1724 450 243 0 105 chr4 149410903 149411027 -6219093 - PB1D7 SINE Alu -9 111 1 9 1724 338 272 25 0 chr4 149411068 149411149 -6218971 + ID4 SINE ID 1 83 0 9 1724 485 259 111 0 chr4 149411259 149411394 -6218726 + RSINE1 SINE B4 13 162 -3 9 1724 401 306 54 70 chr4 149411452 149411638 -6218482 + ID_B1 SINE B4 3 185 -39 9 1724 260 316 35 11 chr4 149411637 149411739 -6218381 + B1_Mur2 SINE Alu 46 149 0 9 1724 221 308 0 0 chr4 149411756 149411821 -6218299 + BC1_Mm scRNA scRNA 15 79 -73 9 1724 234 62 0 0 chr4 149412400 149412432 -6217688 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1724 679 136 0 0 chr4 149412434 149412537 -6217583 - B1_Mur1 SINE Alu -11 138 36 9 1724 348 236 114 35 chr4 149412449 149412563 -6217557 - MT2B LTR ERVL -324 277 155 9 1724 446 259 94 8 chr4 149412674 149412791 -6217329 + PB1 SINE Alu 1 127 0 9 1724 1586 38 27 0 chr4 149413783 149413969 -6216151 - B2_Mm1a SINE B2 -2 191 1 9 1724 514 230 187 0 chr4 149414199 149414338 -6215782 + ID_B1 SINE B4 58 222 -2 9 1724 673 209 0 33 chr4 149414343 149414496 -6215624 + B1_Mur3 SINE Alu 2 149 0 9 1724 234 258 43 43 chr4 149414536 149414605 -6215515 + RSINE1 SINE B4 68 136 -29 9 1724 253 227 46 40 chr4 149414788 149414885 -6215235 - MIRm SINE MIR -98 170 78 9 1724 328 238 0 97 chr4 149414885 149414978 -6215142 + RSINE1 SINE B4 82 165 0 9 1724 192 77 0 0 chr4 149414994 149415020 -6215100 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 9 1724 547 261 22 38 chr4 149415049 149415188 -6214932 + ID_B1 SINE B4 80 217 -75 9 1724 1086 71 0 41 chr4 149415188 149415334 -6214786 + B1_Mus2 SINE Alu 2 141 -6 9 1724 243 335 41 71 chr4 149415334 149415364 -6214756 + B4A SINE B4 218 246 -46 9 1724 288 111 15 31 chr4 149415364 149415429 -6214691 + GA-rich Low_complexity Low_complexity 1 64 0 9 1724 342 345 66 33 chr4 149415511 149415784 -6214336 - L2 LINE L2 -540 2879 2598 9 1724 211 309 31 21 chr4 149416006 149416102 -6214018 - L2 LINE L2 -1142 2277 2181 9 1724 202 213 0 0 chr4 149416331 149416378 -6213742 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 9 1724 733 325 25 18 chr4 149416431 149416716 -6213404 - B4A SINE B4 -3 289 3 9 1724 234 0 0 0 chr4 149416734 149416760 -6213360 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1724 519 229 0 0 chr4 149416760 149416865 -6213255 - PB1D10 SINE Alu -10 107 3 9 1724 506 303 94 60 chr4 149417192 149417427 -6212693 + B4 SINE B4 27 269 -23 9 1724 1252 34 0 0 chr4 149417470 149417617 -6212503 + B1_Mus2 SINE Alu 1 147 0 9 1724 210 37 0 0 chr4 149417642 149417669 -6212451 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1724 461 212 0 12 chr4 149417708 149417789 -6212331 + ID4_ SINE ID 2 81 -2 9 1724 962 213 42 37 chr4 149417800 149418015 -6212105 + B3 SINE B2 1 216 0 9 1724 644 221 0 7 chr4 149418020 149418157 -6211963 + ID_B1 SINE B4 81 216 -8 9 1724 230 184 61 0 chr4 149418114 149418163 -6211957 + PB1D7 SINE Alu 67 118 -2 9 1724 185 0 40 0 chr4 149418265 149418290 -6211830 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1724 1261 27 7 0 chr4 149418362 149418508 -6211612 + B1_Mus1 SINE Alu 2 148 0 9 1724 599 261 8 0 chr4 149418668 149418802 -6211318 - RSINE1 SINE B4 -28 137 3 9 1724 225 255 0 0 chr4 149419248 149419295 -6210825 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1724 189 222 0 0 chr4 149419617 149419680 -6210440 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1724 432 257 179 68 chr4 149419691 149419954 -6210166 - B4 SINE B4 0 292 1 9 1724 566 274 78 31 chr4 149420024 149420216 -6209904 - ORR1D2 LTR MaLR 0 370 170 9 1724 444 19 0 0 chr4 149420774 149420827 -6209293 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1724 232 296 0 0 chr4 149420895 149420949 -6209171 + B1_Mus2 SINE Alu 1 54 -93 9 1724 193 0 0 159 chr4 149420953 149421116 -6209004 + GA-rich Low_complexity Low_complexity 3 139 0 9 1724 629 160 9 0 chr4 149421119 149421225 -6208895 + B1_Mur1 SINE Alu 42 148 -1 9 1724 1178 88 0 0 chr4 149421231 149421379 -6208741 + B1_Mus1 SINE Alu 1 148 0 9 1724 482 83 0 14 chr4 149421381 149421454 -6208666 + (GAAAA)n Simple_repeat Simple_repeat 2 73 0 9 1725 405 0 0 0 chr4 149423793 149423838 -6206282 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1725 268 189 38 0 chr4 149423847 149423900 -6206220 - B1F SINE Alu -56 93 39 9 1725 202 281 138 53 chr4 149425707 149425801 -6204319 - L2b LINE L2 -297 3078 2977 9 1725 402 255 19 0 chr4 149426184 149426290 -6203830 + PB1D10 SINE Alu 1 108 -9 9 1725 877 140 0 22 chr4 149426370 149426509 -6203611 + B1_Mur4 SINE Alu 2 137 -13 9 1725 305 270 94 17 chr4 149426651 149426768 -6203352 - L1MCa LINE L1 -4302 2206 2081 9 1725 807 119 22 11 chr4 149426825 149427003 -6203117 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1725 693 183 61 0 chr4 149427231 149427362 -6202758 - B1_Mur4 SINE Alu 0 150 12 9 1725 303 268 11 23 chr4 149427290 149427378 -6202742 - B4A SINE B4 -125 167 81 9 1725 448 313 87 54 chr4 149427722 149427999 -6202121 - B4A SINE B4 0 292 7 9 1725 525 285 63 44 chr4 149428338 149428496 -6201624 + ID_B1 SINE B4 1 161 -63 9 1725 210 143 0 0 chr4 149428511 149428546 -6201574 + (TGG)n Simple_repeat Simple_repeat 1 35 0 9 1725 285 111 0 0 chr4 149428558 149428603 -6201517 - B1_Mur1 SINE Alu -29 120 76 9 1725 292 250 0 0 chr4 149428718 149428782 -6201338 + ID4 SINE ID 18 81 -2 9 1725 263 28 28 0 chr4 149428895 149428931 -6201189 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1725 369 0 0 0 chr4 149429262 149429303 -6200817 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1725 474 309 85 67 chr4 149429688 149430018 -6200102 - MLT1E1 LTR MaLR -6 648 313 9 1725 268 286 133 0 chr4 149430053 149430151 -6199969 - PB1D10 SINE Alu -5 112 2 9 1725 793 278 16 0 chr4 149430194 149430385 -6199735 + ID_B1 SINE B4 25 218 -6 9 1725 238 192 58 0 chr4 149430339 149430391 -6199729 + PB1D9 SINE Alu 66 120 0 9 1725 982 208 19 28 chr4 149431268 149431481 -6198639 - B3 SINE B2 -5 211 1 9 1725 1098 184 19 42 chr4 149432543 149432759 -6197361 - B3 SINE B2 -5 211 1 9 1725 25 51 0 0 chr4 149432802 149432841 -6197279 + AT_rich Low_complexity Low_complexity 1 39 0 9 1725 898 212 55 40 chr4 149432866 149433067 -6197053 + ID_B1 SINE B4 1 204 -20 9 1725 268 212 47 59 chr4 149434014 149434099 -6196021 - MER20 DNA MER1_type -111 108 25 9 1725 360 0 0 0 chr4 149434376 149434416 -6195704 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1725 617 254 0 7 chr4 149436834 149436969 -6193151 - B1F1 SINE Alu -1 148 15 9 1725 216 0 0 0 chr4 149437115 149437139 -6192981 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 9 1725 292 360 42 28 chr4 149437368 149437511 -6192609 - MLT1L LTR MaLR -303 307 163 9 1725 457 256 0 0 chr4 149437542 149437632 -6192488 - B3A SINE B2 -97 101 12 9 1725 1220 48 0 20 chr4 149437893 149438043 -6192077 - B1_Mm SINE Alu 0 147 1 9 1725 511 161 221 9 chr4 149438217 149438330 -6191790 + B1_Mur2 SINE Alu 1 137 -12 9 1725 218 105 26 0 chr4 149438330 149438368 -6191752 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 1725 651 292 29 5 chr4 149438368 149438578 -6191542 - L1_Mur3 LINE L1 -136 5744 5530 9 1725 452 132 14 0 chr4 149438803 149438885 -6191235 + B3A SINE B2 1 83 -133 9 1725 342 274 112 9 chr4 149439254 149439361 -6190759 - B1_Mur1 SINE Alu -27 122 5 9 1725 1006 201 14 42 chr4 149439399 149439612 -6190508 - B3 SINE B2 -9 207 1 9 1725 242 197 76 0 chr4 149440233 149440299 -6189821 - ID_B1 SINE B4 0 224 154 9 1725 300 111 0 0 chr4 149440334 149440379 -6189741 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 9 1725 517 304 22 0 chr4 149440384 149440522 -6189598 - RSINE1 SINE B4 -4 161 21 9 1725 919 286 82 124 chr4 149440861 149441448 -6188672 - Lx8 LINE L1 -97 7376 6815 9 1725 281 256 0 68 chr4 149441456 149441544 -6188576 - ID4 SINE ID 0 83 2 9 1725 296 313 111 29 chr4 149441576 149441747 -6188373 + MLT2C1 LTR ERVL 3 187 -210 9 1725 414 0 0 0 chr4 149441882 149441928 -6188192 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1725 246 231 0 84 chr4 149441931 149442002 -6188118 - RSINE1 SINE B4 -96 69 5 9 1725 1226 163 24 14 chr4 149442020 149442231 -6187889 - B3 SINE B2 -3 213 1 9 1725 370 194 0 0 chr4 149442245 149442312 -6187808 - PB1 SINE Alu -19 108 42 9 1725 209 306 0 0 chr4 149443678 149443737 -6186383 + T-rich Low_complexity Low_complexity 27 85 0 9 1725 1277 27 0 0 chr4 149443737 149443884 -6186236 - B1_Mm SINE Alu 0 147 1 9 1725 209 306 0 0 chr4 149443884 149443909 -6186211 + T-rich Low_complexity Low_complexity 2 26 0 1 1725 523 229 14 48 chr4 149443935 149444082 -6186038 - RSINE1 SINE B4 -21 144 3 1 1725 680 255 0 7 chr4 149444082 149444228 -6185892 - B1F1 SINE Alu -1 148 4 1 1725 680 179 186 23 chr4 149444696 149444868 -6185252 - B3 SINE B2 -16 200 1 1 1725 334 306 40 40 chr4 149444995 149445121 -6184999 + B1_Mur1 SINE Alu 24 149 0 1 1725 339 301 57 19 chr4 149445161 149445266 -6184854 + B1F2 SINE Alu 1 109 -40 1 1725 830 249 72 5 chr4 149445272 149445466 -6184654 + B3 SINE B2 1 207 -9 1 1725 1206 48 7 0 chr4 149445498 149445644 -6184476 - B1_Mus1 SINE Alu -1 147 1 1 1725 532 143 0 0 chr4 149445967 149446051 -6184069 + B1_Mur1 SINE Alu 66 149 0 1 1725 808 181 228 0 chr4 149446063 149446234 -6183886 + B3 SINE B2 1 210 -6 1 1725 1317 103 16 16 chr4 149446268 149446455 -6183665 + B2_Mm2 SINE B2 1 187 -8 1 1725 414 237 119 0 chr4 149446520 149446638 -6183482 - MLT1B LTR MaLR -230 160 29 1 1725 255 31 0 0 chr4 149447186 149447218 -6182902 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1725 276 30 0 0 chr4 149447222 149447255 -6182865 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1725 231 196 65 0 chr4 149447509 149447555 -6182565 + polypyrimidine Low_complexity Low_complexity 1 49 0 1 1725 574 189 19 0 chr4 149447559 149447665 -6182455 - B1_Mur1 SINE Alu -9 140 33 1 1725 566 168 9 0 chr4 149447669 149447782 -6182338 + CT-rich Low_complexity Low_complexity 3 116 0 1 1725 482 241 0 0 chr4 149447782 149447894 -6182226 - PB1D10 SINE Alu -5 112 1 1 1725 271 330 38 0 chr4 149447941 149448047 -6182073 - PB1D9 SINE Alu -9 111 2 1 1725 265 284 26 51 chr4 149448153 149448231 -6181889 + PB1D10 SINE Alu 34 109 -8 1 1725 375 23 0 0 chr4 149448361 149448405 -6181715 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1725 232 108 27 0 chr4 149448423 149448460 -6181660 + PB1D9 SINE Alu 13 50 -70 1 1725 306 0 0 0 chr4 149448519 149448553 -6181567 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1 1725 446 245 0 19 chr4 149448851 149448955 -6181165 + ID_B1 SINE B4 116 217 -7 1 1725 618 167 56 0 chr4 149448964 149449072 -6181048 + B1_Mur4 SINE Alu 31 144 -6 1 1725 23 68 0 0 chr4 149449072 149449116 -6181004 + AT_rich Low_complexity Low_complexity 1 44 0 1 1725 228 67 0 0 chr4 149449170 149449200 -6180920 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1725 277 352 15 62 chr4 149449203 149449333 -6180787 - PB1 SINE Alu -2 125 2 1 1725 351 198 83 73 chr4 149449952 149450061 -6180059 + PB1D10 SINE Alu 2 111 -6 1 1725 364 353 15 0 chr4 149450294 149450427 -6179693 + L1MB4 LINE L1 5773 5907 -273 1 1725 316 292 84 52 chr4 149450442 149450597 -6179523 + L1MB4 LINE L1 5981 6140 -40 1 1725 1476 43 27 11 chr4 149450598 149450758 -6179362 + B2_Mm1a SINE B2 1 160 -33 1 1725 207 0 0 0 chr4 149450758 149450781 -6179339 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1725 1476 43 27 11 chr4 149450781 149450808 -6179312 + B2_Mm1a SINE B2 161 191 -2 1 1725 1288 34 0 0 chr4 149450820 149450967 -6179153 + B1_Mus2 SINE Alu 1 147 0 1 1725 292 299 54 68 chr4 149450993 149451132 -6178988 + ID_B1 SINE B4 78 215 -9 1 1725 308 64 0 21 chr4 149451132 149451180 -6178940 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1725 1429 90 16 0 chr4 149451218 149451406 -6178714 - B2_Mm2 SINE B2 -4 191 1 1 1725 991 211 58 5 chr4 149451431 149451636 -6178484 - B3 SINE B2 0 216 1 1 1725 3288 58 2 0 chr4 149452118 149452512 -6177608 + MTA_Mm LTR MaLR 2 396 0 1 1725 1137 83 0 0 chr4 149453121 149453301 -6176819 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1725 400 189 53 0 chr4 149454088 149454183 -6175937 + PB1D10 SINE Alu 17 116 -1 1 1725 247 280 179 65 chr4 149454183 149454256 -6175864 + B4 SINE B4 102 288 -4 1 1725 1129 71 0 0 chr4 149454309 149454450 -6175670 + B1_Mus1 SINE Alu 2 142 -6 1 1725 207 88 0 0 chr4 149454538 149454572 -6175548 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1725 241 317 121 27 chr4 149454793 149454942 -6175178 + L1M5 LINE L1 5721 5883 -357 1 1725 1405 57 17 0 chr4 149454951 149455126 -6174994 + B2_Mm1t SINE B2 2 179 -14 1 1725 322 104 0 29 chr4 149455161 149455230 -6174890 + B2_Mm1a SINE B2 127 193 0 1 1725 357 244 25 13 chr4 149455242 149455321 -6174799 + ID4 SINE ID 4 83 0 1 1725 260 284 0 56 chr4 149455364 149455435 -6174685 + PB1D10 SINE Alu 12 78 -39 1 1725 204 167 0 67 chr4 149455437 149455482 -6174638 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 1 1725 2620 55 3 58 chr4 149455578 149455924 -6174196 - ORR1A2 LTR MaLR 0 327 1 1 1725 1561 169 199 6 chr4 149456011 149456362 -6173758 - MTC LTR MaLR -2 419 1 1 1725 2518 266 56 139 chr4 149456368 149456541 -6173579 - MTC-int LTR MaLR -5 1253 1085 1 1725 829 134 39 72 chr4 149456541 149456694 -6173426 + B1_Mur4 SINE Alu 3 150 0 1 1725 2518 266 56 139 chr4 149456694 149456738 -6173382 - MTC-int LTR MaLR -174 1084 1075 1 1725 654 0 0 34 chr4 149456738 149456827 -6173293 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 1 1725 2751 250 51 100 chr4 149456827 149457810 -6172310 - MTC-int LTR MaLR -184 1074 151 1 1725 1236 41 0 7 chr4 149457810 149457958 -6172162 - B1_Mm SINE Alu 0 147 1 1 1725 2751 247 50 94 chr4 149457958 149458121 -6171999 - MTC-int LTR MaLR -1099 159 1 1 1725 2425 145 66 5 chr4 149458121 149458516 -6171604 - MTC LTR MaLR 0 421 3 1 1725 1255 14 0 0 chr4 149458541 149458681 -6171439 + B1_Mus2 SINE Alu 1 140 -7 1 1725 324 0 0 0 chr4 149458684 149458720 -6171400 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1725 272 270 200 0 chr4 149458746 149458861 -6171259 + ID_B1 SINE B4 86 223 -1 1 1725 677 273 144 24 chr4 149458870 149459329 -6170791 + L1ME2z LINE L1 5509 6026 -158 1 1725 233 312 91 54 chr4 149459472 149459487 -6170633 - B2_Mm2 SINE B2 -1 194 180 1 1725 534 181 31 23 chr4 149459487 149459617 -6170503 - Lx7 LINE L1 0 7696 7566 1 1725 432 245 176 15 chr4 149459617 149459787 -6170333 - B3 SINE B2 -28 188 2 1 1725 235 316 92 63 chr4 149459922 149459933 -6170187 - B3 SINE B2 -3 213 205 1 1725 243 88 0 0 chr4 149459933 149459967 -6170153 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1725 1197 62 0 0 chr4 149459967 149460112 -6170008 - B1_Mus1 SINE Alu -2 146 2 1 1725 270 0 0 0 chr4 149460113 149460143 -6169977 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 1725 283 359 0 79 chr4 149460143 149460270 -6169850 - B3A SINE B2 -14 184 68 1 1725 290 275 142 68 chr4 149460411 149460559 -6169561 - RSINE1 SINE B4 -2 163 5 1 1725 831 203 133 5 chr4 149460589 149460777 -6169343 + B3 SINE B2 1 212 -4 1 1725 1018 198 0 34 chr4 149462843 149463047 -6167073 - B3 SINE B2 0 216 20 1 1725 302 184 184 0 chr4 149464131 149464218 -6165902 - PB1D9 SINE Alu -13 107 5 1 1725 228 275 10 81 chr4 149464298 149464319 -6165801 + MT2B2 LTR ERVL 150 163 -421 1 1725 313 271 59 0 chr4 149464319 149464404 -6165716 + PB1D10 SINE Alu 1 90 -27 1 1725 405 219 65 73 chr4 149464328 149464451 -6165669 + ID_B1 SINE B4 91 212 -12 1 1725 1106 92 102 11 chr4 149464883 149465059 -6165061 - B2_Mm2 SINE B2 -2 193 2 1 1725 618 189 49 42 chr4 149465709 149465853 -6164267 - RSINE1 SINE B4 -18 147 3 1 1725 269 259 34 80 chr4 149465895 149465983 -6164137 - ID_B1 SINE B4 -87 137 54 1 1725 437 285 16 31 chr4 149466004 149466131 -6163989 - B1F SINE Alu 0 149 25 1 1725 396 0 0 0 chr4 149466320 149466364 -6163756 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1725 381 226 36 0 chr4 149466386 149466470 -6163650 - B3 SINE B2 -129 87 1 1 1725 301 256 31 104 chr4 149466894 149466933 -6163187 + B4A SINE B4 57 88 -204 1 1725 397 232 14 0 chr4 149466933 149467023 -6163097 + B1F SINE Alu 4 95 -25 1 1725 496 235 58 14 chr4 149467122 149467260 -6162860 - ID_B1 SINE B4 0 224 81 1 1725 401 184 54 72 chr4 149467263 149467374 -6162746 - B1F SINE Alu 0 149 41 1 1725 304 234 52 78 chr4 149467477 149467593 -6162527 - PB1D9 SINE Alu 0 120 8 1 1725 625 357 53 12 chr4 149469206 149469529 -6160591 - MLT1B LTR MaLR -53 337 2 1 1725 231 250 19 0 chr4 149469824 149469876 -6160244 + RSINE1 SINE B4 84 136 -29 1 1725 774 206 87 58 chr4 149470068 149470279 -6159841 + B3 SINE B2 9 206 -10 1 1725 265 243 234 7 chr4 149470442 149470469 -6159651 - B4A SINE B4 -18 274 102 1 1725 487 197 4 10 chr4 149470469 149470583 -6159537 - PB1D7 SINE Alu -22 128 18 1 1725 215 195 0 0 chr4 149470818 149470859 -6159261 - RSINE1 SINE B4 -29 136 96 1 1725 212 147 0 0 chr4 149471281 149471315 -6158805 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1725 243 241 162 12 chr4 149471376 149471456 -6158664 - PB1D10 SINE Alu -25 92 1 1 1725 259 211 111 14 chr4 149471385 149471457 -6158663 - MT2B LTR ERVL -360 241 163 1 1725 909 35 0 0 chr4 149471795 149471909 -6158211 - B2_Mm2 SINE B2 -79 116 3 1 1725 272 157 315 0 chr4 149472169 149472258 -6157862 - B3 SINE B2 -1 215 99 1 1725 368 202 136 39 chr4 149472376 149472479 -6157641 - B2_Mm2 SINE B2 -67 128 16 1 1725 549 250 68 0 chr4 149472483 149472615 -6157505 - B1F1 SINE Alu -8 141 1 1 1725 369 250 78 103 chr4 149473530 149473550 -6156570 - ID_B1 SINE B4 -2 222 213 1 1725 949 231 41 28 chr4 149473550 149473768 -6156352 - ID_B1 SINE B4 -2 222 2 1 1725 369 250 78 103 chr4 149473768 149473863 -6156257 - ID_B1 SINE B4 -12 212 110 1 1725 474 219 11 9 chr4 149473917 149474043 -6156077 - PB1D9 SINE Alu -20 129 2 1 1725 198 360 232 6 chr4 149475004 149475491 -6154629 - L2 LINE L2 -421 2998 2402 1 1725 709 83 37 0 chr4 149477505 149477613 -6152507 - B1_Mur1 SINE Alu 0 149 38 1 1725 226 245 0 0 chr4 149477645 149477694 -6152426 - BC1_Mm scRNA scRNA -103 49 1 1 1725 464 283 36 7 chr4 149477706 149477845 -6152275 - B1F SINE Alu -5 144 2 1 1725 1201 68 0 0 chr4 149478954 149479100 -6151020 - B1_Mus1 SINE Alu 0 148 3 1 1725 357 82 0 0 chr4 149479166 149479215 -6150905 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1725 1428 73 17 0 chr4 149479308 149479486 -6150634 + B2_Mm2 SINE B2 3 183 -12 1 1725 822 116 0 0 chr4 149479601 149479748 -6150372 + (TC)n Simple_repeat Simple_repeat 2 148 0 1 1725 551 275 89 6 chr4 149479795 149479974 -6150146 - B3A SINE B2 -3 195 2 1 1725 243 0 0 0 chr4 149480293 149480320 -6149800 + (CCA)n Simple_repeat Simple_repeat 2 28 0 1 1725 819 295 60 48 chr4 149480995 149481050 -6149070 - MTE2a LTR MaLR -3 376 322 1 1725 605 177 136 15 chr4 149481050 149481182 -6148938 + B1_Mur1 SINE Alu 2 149 0 1 1725 819 295 60 48 chr4 149481182 149481435 -6148685 - MTE2a LTR MaLR -58 321 66 1 1725 3640 94 63 95 chr4 149481435 149482056 -6148064 - MT2B LTR ERVL 0 601 1 1 1725 819 295 60 48 chr4 149482056 149482077 -6148043 - MTE2a LTR MaLR -314 65 43 1 1725 717 274 50 34 chr4 149482061 149482355 -6147765 + B4 SINE B4 14 292 0 1 1725 1118 207 13 47 chr4 149482486 149482626 -6147494 - URR1B DNA MER1_type 0 225 93 1 1725 1354 116 32 0 chr4 149482626 149482815 -6147305 - B2_Mm2 SINE B2 0 195 1 1 1725 1118 207 13 47 chr4 149482815 149482907 -6147213 - URR1B DNA MER1_type -133 92 1 1 1725 834 170 27 54 chr4 149483288 149483437 -6146683 - B1_Mur1 SINE Alu -4 145 1 1 1725 961 208 51 0 chr4 149483445 149483642 -6146478 - B3 SINE B2 -9 207 1 1 1725 1120 228 9 0 chr4 149483662 149483873 -6146247 - B3 SINE B2 -1 215 3 1 1725 238 242 121 0 chr4 149484283 149484349 -6145771 - ID2 SINE ID -9 74 1 1 1725 1766 186 74 8 chr4 149484474 149484827 -6145293 + RLTR14 LTR ERV1 7 382 0 1 1725 272 233 0 0 chr4 149484854 149484914 -6145206 + MTD LTR MaLR 13 72 -349 1 1725 1335 98 22 0 chr4 149484943 149485127 -6144993 + B2_Mm2 SINE B2 5 192 -3 1 1725 649 55 0 32 chr4 149485131 149485225 -6144895 + B1_Mm SINE Alu 57 147 0 1 1725 1111 203 164 16 chr4 149485227 149485532 -6144588 + MTD LTR MaLR 68 417 -2 1 1725 420 265 68 93 chr4 149485542 149485704 -6144416 - ID_B1 SINE B4 -78 214 57 1 1725 265 276 10 48 chr4 149486046 149486149 -6143971 - PB1D10 SINE Alu -18 99 1 1 1725 235 297 39 51 chr4 149486409 149486487 -6143633 - ID4_ SINE ID -4 79 3 1 1725 485 256 45 30 chr4 149486672 149486805 -6143315 - B1F1 SINE Alu -11 138 4 1 1725 232 48 48 0 chr4 149487076 149487118 -6143002 + (TGGGGG)n Simple_repeat Simple_repeat 2 45 0 1 1725 258 32 0 0 chr4 149487351 149487382 -6142738 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 1 1725 1144 72 0 0 chr4 149487382 149487521 -6142599 - B1_Mus1 SINE Alu -8 140 2 1 1725 315 0 0 0 chr4 149487527 149487562 -6142558 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1725 226 265 44 0 chr4 149487593 149487661 -6142459 - Lx9 LINE L1 -4 7640 7570 1 1725 821 279 29 14 chr4 149487777 149487984 -6142136 + B3 SINE B2 1 210 -6 1 1725 254 264 20 90 chr4 149487989 149488001 -6142119 + MT2B2 LTR ERVL 152 156 -428 1 1725 437 280 17 0 chr4 149488001 149488119 -6142001 + PB1D7 SINE Alu 1 120 0 1 1725 668 229 249 42 chr4 149488189 149488430 -6141690 + B4 SINE B4 2 292 0 1 1725 390 268 9 26 chr4 149489703 149489818 -6140302 + B3 SINE B2 101 213 -3 1 1725 303 302 55 28 chr4 149489956 149490065 -6140055 - PB1D9 SINE Alu -4 116 5 1 1725 1113 262 34 101 chr4 149490072 149490458 -6139662 + MTE2a LTR MaLR 20 379 0 1 1725 557 120 11 0 chr4 149490498 149490590 -6139530 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 1 1725 640 215 0 0 chr4 149490593 149490714 -6139406 + B1_Mm SINE Alu 27 147 0 1 1725 621 136 0 0 chr4 149490841 149490944 -6139176 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 1 1725 216 48 23 45 chr4 149491134 149491178 -6138942 + (CACCC)n Simple_repeat Simple_repeat 4 46 0 1 1725 1290 254 64 17 chr4 149491267 149491627 -6138493 + MTD LTR MaLR 43 419 0 1 1725 259 169 0 44 chr4 149491785 149491853 -6138267 + CT-rich Low_complexity Low_complexity 4 68 0 1 1725 460 200 142 0 chr4 149491860 149491980 -6138140 - ID_B1 SINE B4 0 224 88 1 1725 995 207 24 10 chr4 149492124 149492329 -6137791 + B3 SINE B2 2 209 -7 1 1725 471 296 24 0 chr4 149492699 149492824 -6137296 + B1F SINE Alu 14 141 -8 1 1725 261 0 0 0 chr4 149492825 149492854 -6137266 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1725 209 119 24 0 chr4 149493280 149493322 -6136798 + (CCCCCG)n Simple_repeat Simple_repeat 3 45 0 1 1725 547 276 141 15 chr4 149495124 149495323 -6134797 + ID_B1 SINE B4 1 224 0 1 1725 1207 68 0 0 chr4 149495424 149495572 -6134548 + B1_Mus1 SINE Alu 1 148 0 1 1725 181 299 17 86 chr4 149495729 149495846 -6134274 + MIRm SINE MIR 10 118 -158 1 1725 360 294 59 0 chr4 149495856 149495958 -6134162 - PB1D10 SINE Alu -7 110 3 1 1725 369 286 29 39 chr4 149495870 149495973 -6134147 - ID_B1 SINE B4 -53 171 77 1 1725 372 224 26 0 chr4 149496296 149496372 -6133748 - ID4_ SINE ID -3 80 3 1 1725 332 286 0 39 chr4 149496412 149496514 -6133606 - PB1D10 SINE Alu -18 99 2 1 1725 309 312 11 0 chr4 149497692 149497785 -6132335 + L1MA9 LINE L1 6171 6264 -48 1 1725 233 321 101 0 chr4 149497800 149497909 -6132211 + B1F1 SINE Alu 30 149 0 1 1725 760 240 53 19 chr4 149498120 149498328 -6131792 + B3 SINE B2 1 215 -1 1 1725 261 0 0 0 chr4 149498487 149498516 -6131604 + (CAGCC)n Simple_repeat Simple_repeat 4 32 0 1 1725 329 219 8 0 chr4 149498662 149498781 -6131339 + GA-rich Low_complexity Low_complexity 2 121 0 1 1725 478 165 61 20 chr4 149498790 149498889 -6131231 + B1_Mur2 SINE Alu 40 142 -7 1 1725 216 67 0 0 chr4 149498889 149498919 -6131201 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 1 1725 476 223 9 26 chr4 149498922 149499037 -6131083 + PB1D10 SINE Alu 3 115 -2 1 1725 255 31 0 0 chr4 149500416 149500448 -6129672 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1725 274 310 99 99 chr4 149500487 149500564 -6129556 - B4A SINE B4 -3 289 7 2 1725 867 232 34 15 chr4 149500564 149500770 -6129350 - B3 SINE B2 0 216 7 3 1725 275 293 12 0 chr4 149500870 149500952 -6129168 - RMER1C Other Other -563 779 697 4 1725 410 295 7 61 chr4 149501019 149501044 -6129076 - B4A SINE B4 -152 140 120 5 1725 603 0 0 0 chr4 149501044 149501111 -6129009 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1725 410 295 7 61 chr4 149501111 149501233 -6128887 - B4A SINE B4 -173 119 1 5 1725 382 301 0 16 chr4 149501254 149501379 -6128741 - ID_B1 SINE B4 -20 204 82 7 1725 232 314 18 89 chr4 149501683 149501697 -6128423 + MT2B2 LTR ERVL 154 159 -425 8 1725 402 233 8 0 chr4 149501697 149501797 -6128323 + PB1D10 SINE Alu 3 106 -14 9 1725 1139 179 18 23 chr4 149501865 149502082 -6128038 + B3 SINE B2 1 216 0 1 1725 370 241 221 0 chr4 149502316 149502474 -6127646 - L1MC LINE L1 -1010 5136 4944 1 1725 935 156 161 0 chr4 149502504 149502684 -6127436 - B3 SINE B2 -5 211 3 1 1725 237 192 19 37 chr4 149502717 149502771 -6127349 - ID4 SINE ID 0 83 31 1 1725 314 266 12 12 chr4 149503457 149503537 -6126583 - ID4_ SINE ID -2 81 2 1 1725 762 162 286 6 chr4 149503789 149503957 -6126163 - B3 SINE B2 0 216 2 1 1725 1244 48 0 0 chr4 149504009 149504156 -6125964 + B1_Mus2 SINE Alu 1 147 0 1 1725 207 0 0 0 chr4 149504156 149504179 -6125941 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1725 1395 74 16 16 chr4 149504192 149504385 -6125735 + B2_Mm2 SINE B2 3 195 0 1 1725 435 161 61 12 chr4 149504797 149504879 -6125241 + B1_Mur1 SINE Alu 30 115 -34 1 1725 378 0 0 0 chr4 149504901 149504943 -6125177 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1725 201 167 0 0 chr4 149505146 149505182 -6124938 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 1725 326 255 80 54 chr4 149505224 149505261 -6124859 + RSINE1 SINE B4 3 37 -128 2 1725 1928 131 93 34 chr4 149505261 149505454 -6124666 - RMER17C LTR ERVK 0 410 186 2 1725 432 0 0 0 chr4 149505454 149505502 -6124618 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1725 1928 131 93 34 chr4 149505502 149505695 -6124425 - RMER17C LTR ERVK -225 185 2 2 1725 326 255 80 54 chr4 149505695 149505769 -6124351 + RSINE1 SINE B4 38 117 -48 2 1725 216 0 0 0 chr4 149505803 149505827 -6124293 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 1725 379 271 82 27 chr4 149505860 149505970 -6124150 + PB1D10 SINE Alu 2 117 0 2 1725 244 310 0 40 chr4 149506081 149506155 -6123965 + PB1D10 SINE Alu 31 101 -16 2 1725 521 205 68 51 chr4 149506175 149506293 -6123827 - PB1D7 SINE Alu 0 120 1 2 1725 236 185 0 0 chr4 149506560 149506614 -6123506 + A-rich Low_complexity Low_complexity 4 57 0 2 1725 348 280 30 0 chr4 149506626 149506726 -6123394 - Charlie1b DNA MER1_type -235 288 186 3 1725 239 246 14 14 chr4 149507296 149507366 -6122754 + (CACCC)n Simple_repeat Simple_repeat 3 72 0 3 1725 379 299 10 0 chr4 149507420 149507517 -6122603 + PB1D10 SINE Alu 17 114 -3 3 1725 516 250 12 106 chr4 149507639 149507809 -6122311 - RSINE1 SINE B4 0 165 12 3 1725 762 102 0 0 chr4 149507820 149507947 -6122173 + (TC)n Simple_repeat Simple_repeat 1 127 0 3 1725 266 229 0 0 chr4 149507970 149508018 -6122102 - ID4_ SINE ID -10 73 26 3 1725 24 0 0 0 chr4 149508045 149508069 -6122051 + AT_rich Low_complexity Low_complexity 1 24 0 3 1725 709 210 49 0 chr4 149508098 149508260 -6121860 - B3A SINE B2 -27 171 2 3 1725 429 258 0 0 chr4 149508332 149508425 -6121695 - RSINE1 SINE B4 -71 94 2 3 1725 21 0 0 0 chr4 149508488 149508509 -6121611 + GC_rich Low_complexity Low_complexity 1 21 0 3 1725 288 267 91 56 chr4 149508514 149508657 -6121463 + B3A SINE B2 48 195 -3 4 1725 23 68 0 0 chr4 149508722 149508766 -6121354 + AT_rich Low_complexity Low_complexity 1 44 0 4 1725 222 250 0 0 chr4 149508796 149508848 -6121272 - B1F SINE Alu -4 145 94 4 1725 360 0 0 0 chr4 149509169 149509209 -6120911 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 4 1725 673 190 170 12 chr4 149509428 149509440 -6120680 - B2_Mm2 SINE B2 -2 193 182 4 1725 216 0 0 0 chr4 149509440 149509464 -6120656 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 4 1725 673 190 170 12 chr4 149509464 149509616 -6120504 - B2_Mm2 SINE B2 -14 181 4 4 1725 181 30 29 57 chr4 149510110 149510145 -6119975 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 4 1725 731 210 96 15 chr4 149510148 149510346 -6119774 - ID_B1 SINE B4 -10 214 1 4 1725 282 324 27 9 chr4 149510459 149510571 -6119549 - MIR SINE MIR -62 200 87 4 1725 461 345 14 0 chr4 149511530 149511672 -6118448 + ID_B1 SINE B4 81 224 0 4 1725 233 290 172 0 chr4 149511705 149511798 -6118322 + RSINE1 SINE B4 36 144 -21 5 1725 418 200 21 28 chr4 149511799 149511943 -6118177 + CT-rich Low_complexity Low_complexity 4 146 0 5 1725 357 245 52 21 chr4 149512029 149512125 -6117995 + PB1D10 SINE Alu 8 106 -11 5 1725 786 250 46 56 chr4 149512454 149512670 -6117450 - B3 SINE B2 -1 215 2 5 1725 229 284 59 59 chr4 149513062 149513197 -6116923 - L1M5 LINE L1 -486 5754 5620 5 1725 343 205 93 86 chr4 149515107 149515246 -6114874 - RLTR40 LTR ERVK -186 631 492 5 1725 602 89 0 53 chr4 149515244 149515339 -6114781 - B1_Mur2 SINE Alu 0 149 60 5 1725 1119 259 46 84 chr4 149515335 149515351 -6114769 - RLTR40 LTR ERVK -317 500 487 5 1725 1389 40 79 0 chr4 149515351 149515528 -6114592 - B2_Mm1t SINE B2 -1 192 2 5 1725 1119 259 46 84 chr4 149515528 149516012 -6114108 - RLTR40 LTR ERVK -331 486 19 5 1725 21 0 0 0 chr4 149517902 149517923 -6112197 + GC_rich Low_complexity Low_complexity 1 21 0 5 1725 1212 259 107 28 chr4 149518496 149518873 -6111247 + RLTR16 LTR ERVK 1 399 -106 5 1725 387 0 0 0 chr4 149518873 149518916 -6111204 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1725 1212 259 107 28 chr4 149518916 149519006 -6111114 + RLTR16 LTR ERVK 400 504 -1 5 1725 237 328 45 10 chr4 149519007 149519123 -6110997 + MIR SINE MIR 122 231 -31 6 1725 366 287 66 0 chr4 149519233 149519355 -6110765 + L1MC3 LINE L1 6473 6602 -1183 6 1725 599 187 32 0 chr4 149519436 149519559 -6110561 - B1_Mur1 SINE Alu -12 137 11 6 1725 319 247 78 0 chr4 149519610 149519687 -6110433 + ID4_ SINE ID 1 83 0 6 1725 579 289 7 0 chr4 149520295 149520437 -6109683 + ID_B1 SINE B4 82 224 0 6 1725 233 318 14 96 chr4 149520317 149520463 -6109657 - YREP_Mm Unknown Unknown -1518 294 161 6 1725 238 231 0 0 chr4 149520599 149520651 -6109469 + RLTR19B LTR ERVK 664 715 0 6 1725 561 215 93 52 chr4 149520662 149520834 -6109286 - Lx8 LINE L1 -590 6883 6705 6 1725 484 281 18 0 chr4 149520943 149521057 -6109063 + B4A SINE B4 2 117 -175 6 1725 3507 138 14 4 chr4 149521067 149521629 -6108491 - RLTR20D LTR ERVK 0 568 1 7 1725 342 0 0 0 chr4 149521758 149521796 -6108324 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1725 243 0 0 0 chr4 149521796 149521822 -6108298 + (CG)n Simple_repeat Simple_repeat 2 28 0 7 1725 1138 209 161 28 chr4 149521842 149522166 -6107954 + ORR1D2 LTR MaLR 4 370 0 7 1725 758 239 19 12 chr4 149522193 149522354 -6107766 + RSINE1 SINE B4 4 165 0 7 1725 31 26 0 0 chr4 149522370 149522408 -6107712 + AT_rich Low_complexity Low_complexity 1 38 0 7 1725 380 301 26 9 chr4 149522528 149522642 -6107478 - PB1D10 SINE Alu 0 117 2 7 1725 445 215 0 0 chr4 149524128 149524207 -6105913 - ID4 SINE ID -3 80 2 7 1725 837 192 7 7 chr4 149524236 149524383 -6105737 + B1_Mur3 SINE Alu 2 148 -1 7 1725 292 308 65 21 chr4 149524483 149524576 -6105544 - RSINE1 SINE B4 -67 98 2 7 1725 248 264 73 36 chr4 149524576 149524680 -6105440 - B1F1 SINE Alu -34 115 16 8 1725 212 333 55 14 chr4 149524666 149524691 -6105429 - ID4 SINE ID -3 80 56 8 1725 1432 86 0 21 chr4 149524691 149524882 -6105238 + B2_Mm2 SINE B2 2 188 -7 8 1725 212 333 55 14 chr4 149524882 149524929 -6105191 - ID4 SINE ID -28 55 5 8 1725 1059 52 0 0 chr4 149524940 149525074 -6105046 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 8 1725 496 234 28 0 chr4 149525128 149525235 -6104885 - B3A SINE B2 -88 110 1 8 1725 858 227 29 29 chr4 149525250 149525454 -6104666 - ID_B1 SINE B4 -6 218 15 8 1725 1868 196 19 16 chr4 149525525 149525898 -6104222 + MTD LTR MaLR 2 375 -44 8 1725 334 0 0 0 chr4 149527125 149527165 -6102955 - U2 snRNA snRNA -148 40 1 8 1725 427 68 0 12 chr4 149527205 149527312 -6102808 - B2_Mm2 SINE B2 -7 188 47 8 1725 1355 79 11 0 chr4 149527349 149527526 -6102594 - B2_Mm1t SINE B2 -14 179 1 8 1725 423 0 0 0 chr4 149527627 149527674 -6102446 + (ATTG)n Simple_repeat Simple_repeat 2 48 0 9 1725 502 229 38 0 chr4 149527674 149527779 -6102341 - PB1D9 SINE Alu -10 110 2 9 1725 339 237 209 9 chr4 149528115 149528230 -6101890 + ID_B1 SINE B4 81 218 -6 9 1725 389 319 0 0 chr4 149529125 149529216 -6100904 + B1_Mur1 SINE Alu 27 117 -32 9 1725 351 0 0 0 chr4 149529216 149529255 -6100865 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 9 1725 1530 194 80 33 chr4 149529257 149529647 -6100473 - RMER10A LTR ERVL -25 417 10 9 1725 1862 183 45 11 chr4 149529784 149530138 -6099982 - ORR1B2 LTR MaLR -1 366 1 9 1725 698 128 8 0 chr4 149530185 149530302 -6099818 + (GGA)n Simple_repeat Simple_repeat 3 120 0 9 1725 468 0 0 0 chr4 149530304 149530356 -6099764 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 9 1725 1461 42 4 0 chr4 149530611 149530874 -6099246 + (TGG)n Simple_repeat Simple_repeat 1 263 0 9 1725 1687 36 0 0 chr4 149531069 149531262 -6098858 + B2_Mm1a SINE B2 1 193 0 1 1725 238 288 30 74 chr4 149531870 149532005 -6098115 - B4 SINE B4 -114 178 50 1 1725 468 0 0 0 chr4 149532815 149532867 -6097253 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1725 417 245 20 0 chr4 149533031 149533129 -6096991 + RSINE1 SINE B4 4 103 -62 1 1725 254 273 33 33 chr4 149533191 149533282 -6096838 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 1 1725 292 265 21 52 chr4 149533282 149533418 -6096702 + B3 SINE B2 3 133 -65 1 1725 934 233 42 0 chr4 149534370 149534563 -6095557 + ID_B1 SINE B4 3 203 -21 1 1725 379 258 72 8 chr4 149534453 149534578 -6095542 + B1_Mus1 SINE Alu 14 146 -2 1 1725 895 275 27 86 chr4 149534594 149535071 -6095049 + MT2B LTR ERVL 1 521 -80 1 1725 805 237 62 82 chr4 149535107 149535584 -6094536 + MTC-int LTR MaLR 5 466 -792 1 1725 277 26 0 0 chr4 149535580 149535619 -6094501 + MTC LTR MaLR 252 290 -131 1 1725 284 0 0 0 chr4 149535645 149535684 -6094436 + MTC LTR MaLR 252 290 -131 1 1725 764 184 25 12 chr4 149535710 149535870 -6094250 + MTC LTR MaLR 252 413 -8 1 1725 2163 160 17 7 chr4 149535979 149536090 -6094030 - MTC LTR MaLR -8 413 302 1 1725 977 116 7 0 chr4 149536090 149536245 -6093875 + (GGGA)n Simple_repeat Simple_repeat 2 157 0 1 1725 2163 160 17 7 chr4 149536245 149536542 -6093578 - MTC LTR MaLR -120 301 1 1 1725 298 336 21 28 chr4 149536821 149536962 -6093158 - MER74A LTR ERVL -412 146 7 1 1725 708 277 10 69 chr4 149536966 149537168 -6092952 + B3A SINE B2 2 191 -7 1 1725 587 226 17 0 chr4 149537583 149537698 -6092422 - B3A SINE B2 -80 118 2 1 1725 304 114 0 0 chr4 149537884 149537928 -6092192 - B1_Mur1 SINE Alu -25 124 81 1 1725 1688 123 5 176 chr4 149538176 149538302 -6091818 - ORR1A4 LTR MaLR 0 329 228 1 1725 1217 35 7 0 chr4 149538302 149538447 -6091673 - B1_Mm SINE Alu 0 147 2 1 1725 1688 123 5 176 chr4 149538447 149538713 -6091407 - ORR1A4 LTR MaLR -102 227 4 1 1725 373 278 8 87 chr4 149539457 149539583 -6090537 - PB1D10 SINE Alu -1 116 1 1 1725 215 171 0 0 chr4 149539631 149539666 -6090454 + B1_Mus2 SINE Alu 86 120 -27 1 1725 21 82 0 0 chr4 149539726 149539775 -6090345 + AT_rich Low_complexity Low_complexity 1 49 0 1 1725 735 248 72 0 chr4 149539775 149539928 -6090192 - RSINE1 SINE B4 0 165 2 1 1725 4257 167 22 46 chr4 149540656 149541518 -6088602 - RMER13A LTR ERVK -17 843 3 1 1725 990 265 5 5 chr4 149541582 149541798 -6088322 + ID_B1 SINE B4 1 216 -8 1 1725 280 188 47 0 chr4 149541936 149542000 -6088120 - B1F SINE Alu -69 80 14 1 1725 1120 82 7 13 chr4 149542959 149543108 -6087012 + B1_Mur4 SINE Alu 2 149 -1 1 1725 229 378 99 22 chr4 149543213 149543435 -6086685 - ORR1E LTR MaLR -120 239 1 1 1725 621 268 124 59 chr4 149543452 149543725 -6086395 + B4A SINE B4 2 292 0 1 1725 315 113 0 0 chr4 149543976 149544029 -6086091 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1725 335 288 96 48 chr4 149544040 149544186 -6085934 - B3 SINE B2 -60 156 4 1 1725 819 151 0 0 chr4 149544207 149544366 -6085754 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1725 234 91 0 0 chr4 149544544 149544577 -6085543 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1725 1266 34 0 0 chr4 149544601 149544748 -6085372 + B1_Mus2 SINE Alu 1 147 0 1 1725 429 323 15 29 chr4 149544773 149544910 -6085210 - RSINE1 SINE B4 -28 137 3 1 1725 689 152 192 0 chr4 149544916 149545041 -6085079 - B1_Mur2 SINE Alu 0 149 1 1 1725 312 181 24 12 chr4 149545125 149545206 -6084914 + B1_Mus2 SINE Alu 60 140 -9 1 1725 203 216 71 10 chr4 149545213 149545311 -6084809 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1725 593 235 0 16 chr4 149545311 149545432 -6084688 + PB1D9 SINE Alu 2 120 0 1 1725 397 202 0 0 chr4 149545434 149545523 -6084597 + Lx2 LINE L1 6909 6997 0 1 1725 244 230 14 0 chr4 149545535 149545609 -6084511 + L1ME2 LINE L1 5901 5975 -189 1 1725 504 219 16 39 chr4 149545664 149545792 -6084328 + RSINE1 SINE B4 2 126 -39 1 1725 411 98 0 0 chr4 149546429 149546490 -6083630 + (TTCCC)n Simple_repeat Simple_repeat 5 65 0 1 1725 370 191 107 0 chr4 149546870 149546954 -6083166 + B4A SINE B4 1 93 -199 1 1725 448 275 0 163 chr4 149546957 149547135 -6082985 + RSINE1 SINE B4 4 152 -13 1 1725 330 87 0 0 chr4 149547136 149547182 -6082938 + (CATA)n Simple_repeat Simple_repeat 1 46 0 1 1725 28 0 0 0 chr4 149547204 149547232 -6082888 + AT_rich Low_complexity Low_complexity 1 28 0 1 1725 333 257 52 60 chr4 149547232 149547348 -6082772 + B4A SINE B4 82 196 -96 1 1725 438 176 0 0 chr4 149547363 149547448 -6082672 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1725 225 0 0 0 chr4 149547842 149547867 -6082253 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1725 378 136 161 0 chr4 149548336 149548417 -6081703 + B3 SINE B2 123 216 0 1 1725 1269 27 0 7 chr4 149548668 149548817 -6081303 + B1_Mus1 SINE Alu 1 148 0 1 1725 514 271 101 73 chr4 149548850 149549029 -6081091 + MTD LTR MaLR 90 273 -146 1 1725 1125 115 0 0 chr4 149549294 149549442 -6080678 - B1_Mus1 SINE Alu 0 148 1 1 1725 304 347 46 53 chr4 149549586 149549738 -6080382 - RSINE1 SINE B4 -10 155 5 1 1725 1029 263 20 96 chr4 149549858 149549965 -6080155 + MTEb LTR MaLR 8 105 -274 1 1725 1208 68 0 0 chr4 149549965 149550112 -6080008 + B1_Mus1 SINE Alu 1 147 -1 1 1725 1029 263 20 96 chr4 149550112 149550166 -6079954 + MTEb LTR MaLR 106 151 -228 1 1725 1446 51 0 6 chr4 149550166 149550342 -6079778 + B2_Mm2 SINE B2 2 176 -19 1 1725 1029 263 20 96 chr4 149550342 149550575 -6079545 + MTEb LTR MaLR 152 373 -6 1 1725 587 219 7 74 chr4 149551456 149551604 -6078516 - RSINE1 SINE B4 -24 141 4 1 1725 423 0 0 0 chr4 149551780 149551827 -6078293 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1725 242 290 14 0 chr4 149551935 149552004 -6078116 + RSINE1 SINE B4 4 73 -92 1 1725 727 235 7 0 chr4 149552062 149552198 -6077922 + B1_Mur1 SINE Alu 5 141 -8 1 1725 444 271 138 55 chr4 149552607 149552861 -6077259 + B4A SINE B4 1 275 -17 1 1725 395 224 6 0 chr4 149552926 149553105 -6077015 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 215 328 346 86 0 chr4 149553147 149553309 -6076811 - L2 LINE L2 -445 2974 2799 1 1726 777 279 77 0 chr4 149553724 149553932 -6076188 + B4 SINE B4 2 225 -67 1 1726 1148 95 0 7 chr4 149553936 149554084 -6076036 + B1_Mus1 SINE Alu 1 147 -1 1 1726 486 266 58 68 chr4 149554107 149554238 -6075882 + B3A SINE B2 6 136 -62 1 1726 2541 68 12 12 chr4 149554238 149554564 -6075556 - ORR1A2 LTR MaLR -1 326 1 1 1726 486 266 58 68 chr4 149554564 149554622 -6075498 + B3A SINE B2 137 193 -5 1 1726 212 170 19 0 chr4 149554704 149554757 -6075363 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1726 259 361 17 0 chr4 149554874 149554993 -6075127 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1726 549 283 9 103 chr4 149554993 149555206 -6074914 + B4A SINE B4 100 292 0 1 1726 827 250 34 14 chr4 149555523 149555730 -6074390 - B3 SINE B2 -5 211 1 1 1726 338 267 94 60 chr4 149555920 149556089 -6074031 - B4A SINE B4 -19 273 54 1 1726 3044 83 99 0 chr4 149556089 149556521 -6073599 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1726 374 214 170 88 chr4 149556521 149556569 -6073551 - B4A SINE B4 -247 45 5 1 1726 1836 173 48 43 chr4 149556586 149556979 -6073141 - MTC LTR MaLR -25 396 2 1 1726 313 258 45 0 chr4 149556998 149557064 -6073056 - B1F SINE Alu -33 116 48 1 1726 1200 118 0 49 chr4 149557129 149557151 -6072969 - B2_Mm2 SINE B2 0 195 174 1 1726 1262 54 0 0 chr4 149557151 149557298 -6072822 - B1_Mus1 SINE Alu 0 148 2 1 1726 1200 118 0 49 chr4 149557298 149557318 -6072802 - B2_Mm2 SINE B2 -22 173 162 1 1726 201 74 0 0 chr4 149557318 149557345 -6072775 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1726 1200 118 0 49 chr4 149557345 149557506 -6072614 - B2_Mm2 SINE B2 -34 161 1 1 1726 2703 43 12 0 chr4 149557510 149557837 -6072283 + IAPEY_LTR LTR ERVK 55 385 0 1 1726 211 338 56 0 chr4 149557850 149557921 -6072199 - ID4 SINE ID -1 82 8 1 1726 392 236 46 19 chr4 149557934 149558042 -6072078 - PB1D10 SINE Alu -5 112 2 1 1726 221 220 0 21 chr4 149558257 149558316 -6071804 - ID_B1 SINE B4 -155 137 81 1 1726 252 0 0 0 chr4 149558830 149558858 -6071262 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1726 460 280 16 23 chr4 149558865 149558993 -6071127 - B3 SINE B2 -25 191 65 1 1726 284 183 145 66 chr4 149558992 149559068 -6071052 + B1_Mus2 SINE Alu 66 147 0 1 1726 1217 172 4 4 chr4 149559003 149559236 -6070884 + ORR1B1-int LTR MaLR 728 960 -549 1 1726 1803 184 52 6 chr4 149559182 149559527 -6070593 + RMER19B LTR ERVK 542 902 0 1 1726 1232 48 7 0 chr4 149559584 149559731 -6070389 - B1_Mus1 SINE Alu 0 148 1 1 1726 570 140 0 0 chr4 149559809 149559909 -6070211 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1726 810 187 7 14 chr4 149559915 149560056 -6070064 - B1_Mur2 SINE Alu -8 141 2 1 1726 498 250 54 0 chr4 149560136 149560248 -6069872 + RSINE1 SINE B4 8 125 -40 1 1726 660 196 31 25 chr4 149560261 149560423 -6069697 + B3 SINE B2 28 192 -3 1 1726 718 255 124 5 chr4 149560522 149560715 -6069405 + B3 SINE B2 1 216 0 1 1726 1257 101 16 43 chr4 149560719 149560905 -6069215 + B2_Mm2 SINE B2 1 181 -14 1 1726 1067 72 0 92 chr4 149560912 149561096 -6069024 + B2_Mm2 SINE B2 27 193 -2 1 1726 373 294 11 0 chr4 149561682 149561774 -6068346 + B1_Mus2 SINE Alu 49 141 -6 1 1726 303 209 0 0 chr4 149561774 149561879 -6068241 + GA-rich Low_complexity Low_complexity 1 105 0 1 1726 514 288 10 169 chr4 149562371 149562614 -6067506 + B4A SINE B4 30 230 -62 1 1726 842 193 15 0 chr4 149562614 149562749 -6067371 + B1_Mur1 SINE Alu 1 137 -12 1 1726 207 0 0 0 chr4 149562749 149562772 -6067348 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1 1726 514 288 10 169 chr4 149562772 149562840 -6067280 + B4A SINE B4 231 291 -1 1 1726 371 21 0 20 chr4 149562946 149562995 -6067125 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1726 27 29 0 0 chr4 149563747 149563781 -6066339 + AT_rich Low_complexity Low_complexity 1 34 0 2 1726 651 266 7 0 chr4 149563781 149563920 -6066200 - B1_Mur1 SINE Alu -9 140 1 2 1726 293 341 44 11 chr4 149563926 149564107 -6066013 - L1MEd LINE L1 -4978 1141 955 2 1726 869 117 0 15 chr4 149564138 149564268 -6065852 + B1_Mur4 SINE Alu 5 132 -18 2 1726 702 192 0 0 chr4 149564268 149564424 -6065696 + (TA)n Simple_repeat Simple_repeat 2 157 0 2 1726 207 0 0 0 chr4 149564613 149564636 -6065484 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1726 268 250 52 69 chr4 149564645 149564761 -6065359 - B1F SINE Alu -21 128 15 2 1726 479 204 97 0 chr4 149565058 149565151 -6064969 + B1F SINE Alu 1 102 -47 2 1726 190 227 13 13 chr4 149565155 149565231 -6064889 + GA-rich Low_complexity Low_complexity 3 78 0 2 1726 640 294 15 15 chr4 149565322 149565522 -6064598 + B3 SINE B2 1 200 -16 2 1726 2415 140 33 54 chr4 149565855 149566054 -6064066 + MTC LTR MaLR 2 209 -212 2 1726 1325 105 26 5 chr4 149566054 149566245 -6063875 + B2_Mm2 SINE B2 1 195 0 2 1726 2415 140 33 54 chr4 149566245 149566474 -6063646 + MTC LTR MaLR 210 421 0 2 1726 1230 48 0 7 chr4 149566781 149566928 -6063192 + B1_Mus2 SINE Alu 1 146 -1 2 1726 306 169 0 0 chr4 149566929 149566994 -6063126 + A-rich Low_complexity Low_complexity 1 65 0 2 1726 355 299 21 0 chr4 149567152 149567249 -6062871 + B1F1 SINE Alu 5 103 -46 2 1726 722 146 158 44 chr4 149567249 149567407 -6062713 + B2_Mm2 SINE B2 2 177 -18 2 1726 237 35 0 0 chr4 149567424 149567453 -6062667 + B3A SINE B2 5 33 -165 2 1726 1172 76 7 0 chr4 149567462 149567607 -6062513 + B1_Mus1 SINE Alu 3 148 0 2 1726 708 235 112 5 chr4 149568153 149568341 -6061779 - B3 SINE B2 -7 209 2 2 1726 328 45 29 43 chr4 149568344 149568414 -6061706 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2 1726 954 149 0 20 chr4 149568527 149568678 -6061442 - B1_Mus1 SINE Alu 0 148 1 2 1726 554 259 51 15 chr4 149568681 149568818 -6061302 - B1F SINE Alu 0 149 8 2 1726 349 282 107 47 chr4 149568920 149569069 -6061051 - RSINE1 SINE B4 -5 160 3 2 1726 245 169 347 14 chr4 149569106 149569178 -6060942 - B4A SINE B4 -196 96 1 2 1726 887 203 119 5 chr4 149569545 149569738 -6060382 - B3 SINE B2 0 216 2 2 1726 1114 44 0 29 chr4 149570853 149570993 -6059127 + B1_Mus1 SINE Alu 5 140 -8 2 1726 692 281 176 8 chr4 149571054 149571298 -6058822 + B4A SINE B4 2 286 -6 2 1726 495 307 135 0 chr4 149571884 149572047 -6058073 + ID_B1 SINE B4 11 195 -29 2 1726 211 200 22 0 chr4 149572752 149572797 -6057323 + C-rich Low_complexity Low_complexity 2 47 0 2 1726 640 234 0 0 chr4 149572913 149573037 -6057083 + ID_B1 SINE B4 93 216 -8 2 1726 260 197 0 208 chr4 149573087 149573130 -6056990 + AluG_3 SINE Alu 154 196 -115 2 1726 1053 113 0 0 chr4 149573130 149573289 -6056831 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 2 1726 260 197 0 208 chr4 149573289 149573322 -6056798 + AluG_3 SINE Alu 197 214 -97 2 1726 358 220 137 42 chr4 149573328 149573423 -6056697 - PB1D7 SINE Alu 0 120 17 2 1726 361 171 19 0 chr4 149573424 149573490 -6056630 + PB1 SINE Alu 66 175 0 2 1726 980 132 7 0 chr4 149573491 149573635 -6056485 + B1_Mus2 SINE Alu 3 147 0 2 1726 698 197 49 7 chr4 149573812 149573955 -6056165 - B1_Mur3 SINE Alu 0 149 1 2 1726 364 205 74 23 chr4 149575768 149575897 -6054223 - B3 SINE B2 -57 141 2 2 1726 552 68 0 0 chr4 149575905 149575978 -6054142 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 2 1726 287 99 468 0 chr4 149575978 149576070 -6054050 - B2_Mm2 SINE B2 -14 181 47 2 1726 1189 126 11 0 chr4 149576117 149576291 -6053829 - B2_Mm1t SINE B2 -14 179 4 2 1726 188 279 0 47 chr4 149576784 149576848 -6053272 + MIRm SINE MIR 100 160 -116 2 1726 360 0 0 0 chr4 149576850 149576890 -6053230 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1726 333 282 42 0 chr4 149577195 149577293 -6052827 + PB1D7 SINE Alu 33 143 -6 2 1726 768 171 30 138 chr4 149577312 149577515 -6052605 + B3A SINE B2 1 181 -17 2 1726 225 196 0 0 chr4 149577516 149577572 -6052548 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1726 524 278 144 35 chr4 149577631 149577832 -6052288 + ID_B1 SINE B4 2 224 0 2 1726 313 252 11 84 chr4 149577896 149577910 -6052210 - MT2B LTR ERVL -323 261 221 2 1726 326 230 13 39 chr4 149577910 149577987 -6052133 - B1_Mus2 SINE Alu -56 91 17 2 1726 313 252 11 84 chr4 149577987 149578004 -6052116 - MT2B LTR ERVL -323 220 163 2 1726 320 0 25 0 chr4 149578753 149578793 -6051327 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1726 585 233 26 8 chr4 149579496 149579613 -6050507 - B1_Mm SINE Alu -26 121 3 2 1726 332 229 50 118 chr4 149579515 149579634 -6050486 - MT2B LTR ERVL -344 257 147 2 1726 873 273 18 26 chr4 149579752 149579978 -6050142 - ID_B1 SINE B4 0 224 1 2 1726 290 98 0 19 chr4 149580093 149580145 -6049975 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1726 267 250 16 0 chr4 149580513 149580577 -6049543 - MLT1D LTR MaLR -2 503 439 2 1726 696 218 209 41 chr4 149580579 149580823 -6049297 + B4 SINE B4 3 287 -5 2 1726 509 232 47 40 chr4 149581492 149581640 -6048480 + RMER15 LTR ERVL 422 570 -5 2 1726 908 238 78 85 chr4 149581730 149582024 -6048096 + B4 SINE B4 1 292 0 2 1726 639 159 129 0 chr4 149582253 149582385 -6047735 - MTD LTR MaLR -14 405 257 2 1726 585 252 114 7 chr4 149582409 149582549 -6047571 + RSINE1 SINE B4 8 162 -3 2 1726 327 364 42 21 chr4 149582869 149583012 -6047108 + L1M5 LINE L1 3614 3759 -2387 2 1726 207 162 0 0 chr4 149583017 149583054 -6047066 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 2 1726 371 250 0 0 chr4 149583082 149583154 -6046966 - PB1D10 SINE Alu -35 82 11 2 1726 1403 102 0 10 chr4 149583190 149583387 -6046733 + B2_Mm2 SINE B2 1 195 0 2 1726 455 261 140 58 chr4 149583397 149583568 -6046552 - B3A SINE B2 -12 186 2 2 1726 332 278 102 0 chr4 149583605 149583713 -6046407 + PB1 SINE Alu 9 127 0 2 1726 378 273 36 18 chr4 149583962 149584074 -6046046 - PB1D10 SINE Alu -1 116 3 2 1726 615 224 63 0 chr4 149584074 149584135 -6045985 - ID SINE ID -139 85 16 2 1726 1206 68 0 0 chr4 149584150 149584296 -6045824 + B1_Mus1 SINE Alu 3 148 0 2 1726 329 0 24 0 chr4 149584299 149584340 -6045780 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1726 324 0 0 0 chr4 149585111 149585147 -6044973 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 1726 483 183 62 62 chr4 149585198 149585326 -6044794 - RSINE1 SINE B4 -13 152 25 2 1726 591 241 36 0 chr4 149585344 149585481 -6044639 - B1F SINE Alu -7 142 1 2 1726 236 224 58 29 chr4 149585481 149585550 -6044570 + ZP3AR Satellite Satellite 12 82 -130 2 1726 872 259 10 5 chr4 149585509 149585703 -6044417 + ID_B1 SINE B4 1 195 -29 2 1726 295 298 33 58 chr4 149585596 149585717 -6044403 + B1_Mur4 SINE Alu 10 127 -23 2 1726 1607 47 0 0 chr4 149585906 149586098 -6044022 + B2_Mm1a SINE B2 1 192 -1 2 1726 824 212 77 10 chr4 149586106 149586301 -6043819 + B3 SINE B2 4 211 -5 2 1726 224 250 0 0 chr4 149586332 149586372 -6043748 + B1_Mus2 SINE Alu 2 41 -106 2 1726 2150 209 48 78 chr4 149586374 149586473 -6043647 - RLTR20B1 LTR ERVK 0 563 457 2 1726 396 0 0 0 chr4 149586473 149586517 -6043603 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1726 2150 209 48 78 chr4 149586517 149586997 -6043123 - RLTR20B1 LTR ERVK -107 456 1 2 1726 384 202 50 12 chr4 149586997 149587066 -6043054 + PB1D9 SINE Alu 38 109 -11 2 1726 2578 140 69 11 chr4 149587292 149587725 -6042395 - RLTR19 LTR ERVK 0 499 42 2 1726 632 117 155 0 chr4 149587722 149587825 -6042295 + RMER6B LTR ERVK 341 459 -2 2 1726 1455 75 0 5 chr4 149587852 149588040 -6042080 + B2_Mm2 SINE B2 4 190 -5 2 1726 273 61 0 0 chr4 149588047 149588080 -6042040 - B3 SINE B2 -160 56 24 2 1726 323 271 167 0 chr4 149588131 149588227 -6041893 - RSINE1 SINE B4 0 165 54 2 1726 189 0 0 0 chr4 149588343 149588364 -6041756 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1726 389 243 45 36 chr4 149588373 149588484 -6041636 - PB1D9 SINE Alu -1 119 8 2 1726 195 100 0 0 chr4 149588694 149588724 -6041396 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 2 1726 228 35 0 0 chr4 149588724 149588752 -6041368 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1726 1158 44 0 21 chr4 149588752 149588892 -6041228 - B1_Mus1 SINE Alu -9 139 3 2 1726 903 158 27 0 chr4 149588897 149589043 -6041077 - B1_Mur4 SINE Alu 0 150 1 2 1726 676 220 78 52 chr4 149589066 149589258 -6040862 - B3A SINE B2 0 198 2 2 1726 213 39 0 0 chr4 149589266 149589292 -6040828 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 2 1726 1166 111 193 0 chr4 149589297 149589478 -6040642 - B3 SINE B2 0 216 1 2 1726 906 190 24 80 chr4 149589684 149589896 -6040224 + B3 SINE B2 5 204 -12 2 1726 234 0 0 0 chr4 149589903 149589929 -6040191 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1726 560 273 52 38 chr4 149590099 149590312 -6039808 + RMER15 LTR ERVL 324 539 -36 2 1726 274 189 0 19 chr4 149590487 149590541 -6039579 - PB1D7 SINE Alu -1 119 67 2 1726 288 0 0 0 chr4 149591066 149591098 -6039022 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1726 438 20 0 0 chr4 149591098 149591148 -6038972 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1726 774 151 55 8 chr4 149591148 149591275 -6038845 - B1_Mur2 SINE Alu -16 133 1 3 1726 423 38 0 0 chr4 149591334 149591387 -6038733 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1726 743 216 105 0 chr4 149591414 149591604 -6038516 - B4A SINE B4 -20 272 63 3 1726 1187 54 0 26 chr4 149591977 149592129 -6037991 + B1_Mus1 SINE Alu 1 148 0 3 1726 947 136 28 17 chr4 149592170 149592350 -6037770 - B2_Mm2 SINE B2 -12 183 2 3 1726 599 198 26 8 chr4 149592358 149592475 -6037645 - PB1D9 SINE Alu 0 120 2 3 1726 314 195 35 110 chr4 149592616 149592730 -6037390 + B1F2 SINE Alu 34 136 -13 3 1726 1192 62 0 14 chr4 149592780 149592928 -6037192 - B1_Mus1 SINE Alu -2 146 1 3 1726 593 221 179 39 chr4 149592954 149593005 -6037115 - B3 SINE B2 -5 211 164 3 1726 270 0 0 0 chr4 149593005 149593035 -6037085 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1726 593 221 179 39 chr4 149593035 149593162 -6036958 - B3 SINE B2 -53 163 8 3 1726 755 249 62 5 chr4 149593172 149593382 -6036738 - ID_B1 SINE B4 -1 223 2 3 1726 352 55 18 18 chr4 149593395 149593451 -6036669 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 3 1726 396 244 61 0 chr4 149593453 149593535 -6036585 + ID_B1 SINE B4 81 167 -57 3 1726 252 206 0 100 chr4 149593582 149593652 -6036468 + ID4 SINE ID 2 64 -19 3 1726 866 231 13 78 chr4 149593693 149593923 -6036197 + B3 SINE B2 2 216 0 3 1726 24 0 0 0 chr4 149593941 149593965 -6036155 + AT_rich Low_complexity Low_complexity 1 24 0 3 1726 365 205 15 133 chr4 149593970 149594105 -6036015 - PB1D9 SINE Alu 0 120 2 3 1726 743 246 14 71 chr4 149594114 149594324 -6035796 - B3A SINE B2 0 198 1 3 1726 595 202 45 23 chr4 149594354 149594486 -6035634 - B3 SINE B2 -2 214 80 3 1726 286 211 117 27 chr4 149594519 149594638 -6035482 - MIRb SINE MIR -104 164 46 3 1726 304 298 67 0 chr4 149595186 149595290 -6034830 - PB1D10 SINE Alu -2 115 5 3 1726 261 0 0 0 chr4 149596048 149596077 -6034043 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1726 881 107 7 30 chr4 149596080 149596215 -6033905 - B1_Mur3 SINE Alu -7 142 11 3 1726 335 235 106 19 chr4 149596122 149596226 -6033894 - B4A SINE B4 -99 193 81 3 1726 371 250 0 48 chr4 149596269 149596353 -6033767 - B3 SINE B2 -60 156 77 3 1726 243 274 191 0 chr4 149596498 149596582 -6033538 - B3 SINE B2 -115 101 2 3 1726 693 216 159 25 chr4 149596662 149596819 -6033301 - B3A SINE B2 -16 182 5 3 1726 1487 44 33 6 chr4 149596828 149597011 -6033109 - B2_Mm2 SINE B2 -6 189 2 3 1726 468 284 8 41 chr4 149597550 149597671 -6032449 - RSINE1 SINE B4 0 165 49 3 1726 545 270 133 0 chr4 149597743 149597939 -6032181 - ID_B1 SINE B4 -2 222 1 3 1726 304 203 0 111 chr4 149598402 149598474 -6031646 + RSINE1 SINE B4 102 165 0 3 1726 28 0 0 0 chr4 149598485 149598513 -6031607 + AT_rich Low_complexity Low_complexity 1 28 0 3 1726 947 128 7 45 chr4 149598520 149598675 -6031445 + B1_Mur4 SINE Alu 2 150 0 3 1726 413 256 136 64 chr4 149598686 149598811 -6031309 - B1_Mur1 SINE Alu -1 148 15 3 1726 238 207 172 0 chr4 149598960 149599018 -6031102 + RLTR18B LTR ERVK 441 508 -4 3 1726 643 245 27 34 chr4 149599021 149599169 -6030951 - B3 SINE B2 -30 186 40 3 1726 1135 223 54 49 chr4 149599184 149599513 -6030607 + MTD LTR MaLR 77 413 -6 3 1726 845 72 128 36 chr4 149599526 149599682 -6030438 + B2_Mm2 SINE B2 26 195 0 3 1726 198 103 0 0 chr4 149599688 149599717 -6030403 + (GGA)n Simple_repeat Simple_repeat 2 30 0 3 1726 497 209 34 25 chr4 149599774 149599892 -6030228 + PB1D9 SINE Alu 1 119 -1 3 1726 353 292 195 33 chr4 149600153 149600186 -6029934 + ID_B1 SINE B4 55 221 -68 3 1726 487 292 9 26 chr4 149600186 149600302 -6029818 + PB1D10 SINE Alu 4 117 0 3 1726 245 51 26 0 chr4 149600305 149600344 -6029776 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1726 240 163 47 0 chr4 149600348 149600362 -6029758 + MT2C_Mm LTR ERVL 191 206 -269 3 1726 661 195 9 0 chr4 149600362 149600475 -6029645 + B1_Mur1 SINE Alu 2 115 -34 3 1726 551 229 9 35 chr4 149600469 149600582 -6029538 - ID_B1 SINE B4 -32 192 83 3 1726 24 0 0 0 chr4 149600582 149600606 -6029514 + AT_rich Low_complexity Low_complexity 1 24 0 3 1726 1356 51 17 11 chr4 149600614 149600793 -6029327 + B2_Mm2 SINE B2 2 181 -14 3 1726 2228 143 19 78 chr4 149601304 149601737 -6028383 - MTB_Mm LTR MaLR 0 407 1 3 1726 21 0 0 0 chr4 149601743 149601764 -6028356 + AT_rich Low_complexity Low_complexity 1 21 0 3 1726 834 145 13 33 chr4 149601769 149601919 -6028201 + B1_Mur2 SINE Alu 3 149 0 3 1726 503 264 129 25 chr4 149601922 149602085 -6028035 + B3 SINE B2 1 180 -36 3 1726 305 136 0 0 chr4 149602086 149602130 -6027990 + tRNA-Gly-GGY tRNA tRNA 29 72 -2 3 1726 461 248 166 14 chr4 149602606 149602626 -6027494 - RSINE1 SINE B4 -4 161 142 3 1726 189 107 0 0 chr4 149602626 149602654 -6027466 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 3 1726 461 248 166 14 chr4 149602654 149602772 -6027348 - RSINE1 SINE B4 -24 141 3 3 1726 237 297 27 82 chr4 149602772 149602853 -6027267 - B4 SINE B4 -208 84 10 3 1726 1651 162 16 91 chr4 149602985 149603414 -6026706 + RMER17C LTR ERVK 1 397 -13 3 1726 431 109 0 5 chr4 149603402 149603482 -6026638 - B1_Mus2 SINE Alu -5 142 42 3 1726 258 32 0 0 chr4 149603538 149603569 -6026551 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1726 390 259 16 49 chr4 149603570 149603692 -6026428 - PB1D9 SINE Alu -1 119 2 3 1726 267 242 182 0 chr4 149603698 149603764 -6026356 - ID_B1 SINE B4 -4 220 143 3 1726 545 186 62 85 chr4 149603763 149603887 -6026233 - B3 SINE B2 -4 212 92 3 1726 1046 217 49 128 chr4 149603887 149604215 -6025905 + RLTR14 LTR ERV1 1 302 -80 3 1726 219 344 87 39 chr4 149604197 149604324 -6025796 - RSINE1 SINE B4 -21 144 12 3 1726 433 240 30 10 chr4 149604232 149604333 -6025787 - B3A SINE B2 -94 104 2 3 1726 255 161 0 0 chr4 149604348 149604404 -6025716 + C-rich Low_complexity Low_complexity 1 56 0 3 1726 754 172 130 7 chr4 149606447 149606593 -6023527 - RLTR18 LTR ERVK 0 616 453 3 1726 433 86 0 0 chr4 149606702 149606760 -6023360 - BC1_Mm scRNA scRNA -76 76 19 3 1726 299 309 67 67 chr4 149606750 149606764 -6023356 - RLTR18 LTR ERVK -258 254 248 3 1726 1439 89 5 0 chr4 149606764 149606955 -6023165 - B2_Mm1a SINE B2 0 193 2 3 1726 299 309 67 67 chr4 149606955 149607075 -6023045 - RLTR18 LTR ERVK -265 247 120 3 1726 481 292 18 9 chr4 149607200 149607314 -6022806 - RLTR18 LTR ERVK -495 121 7 3 1726 238 271 8 8 chr4 149607551 149607674 -6022446 + ORR1B1-int LTR MaLR 625 747 -762 3 1726 925 81 0 0 chr4 149607573 149607697 -6022423 + B1_Mus1 SINE Alu 1 124 -24 3 1726 476 234 40 80 chr4 149607697 149607741 -6022379 + MT2B LTR ERVL 179 324 -277 3 1726 564 297 31 25 chr4 149607933 149608095 -6022025 - RSINE1 SINE B4 0 165 3 3 1726 1370 110 16 0 chr4 149608113 149608304 -6021816 - B2_Mm2 SINE B2 -1 194 1 3 1726 575 279 119 6 chr4 149608436 149608595 -6021525 - ID_B1 SINE B4 -46 178 2 3 1726 234 247 11 86 chr4 149609089 149609182 -6020938 + RLTR22_Mur LTR ERVK 1584 1669 -179 3 1726 295 200 14 28 chr4 149609943 149610015 -6020105 - B1_Mur3 SINE Alu 0 149 79 3 1726 313 257 27 13 chr4 149610037 149610112 -6020008 - L1MEg LINE L1 -4126 1958 1883 3 1726 206 0 69 0 chr4 149610112 149610141 -6019979 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 3 1726 592 203 24 8 chr4 149610141 149610265 -6019855 - B1_Mur1 SINE Alu 0 149 24 3 1726 263 281 122 0 chr4 149612264 149612346 -6017774 + RSINE1 SINE B4 23 114 -51 3 1726 326 318 52 19 chr4 149612344 149612498 -6017622 + B4A SINE B4 25 183 -109 3 1726 260 295 112 31 chr4 149613707 149613724 -6016396 - B4 SINE B4 -105 187 86 3 1726 264 312 52 0 chr4 149613724 149613801 -6016319 - PB1D10 SINE Alu -36 81 1 3 1726 323 236 42 83 chr4 149613918 149614038 -6016082 + PB1D10 SINE Alu 3 117 0 3 1726 21 0 0 0 chr4 149614506 149614527 -6015593 + AT_rich Low_complexity Low_complexity 1 21 0 3 1726 359 278 20 10 chr4 149614711 149614809 -6015311 + B4A SINE B4 7 105 -187 3 1726 440 220 55 0 chr4 149615018 149615127 -6014993 - PB1D10 SINE Alu 0 117 3 3 1726 369 256 22 44 chr4 149616856 149616946 -6013174 + B3A SINE B2 1 88 -110 3 1726 343 201 62 9 chr4 149617441 149617554 -6012566 - B3 SINE B2 -32 184 1 3 1726 448 189 191 52 chr4 149618514 149618687 -6011433 - MTE2b LTR MaLR 0 379 183 3 1726 409 123 0 44 chr4 149618681 149618749 -6011371 + B1_Mus1 SINE Alu 31 95 -53 3 1726 400 331 56 95 chr4 149618696 149618980 -6011140 - MTE2a LTR MaLR -106 273 1 3 1726 371 143 0 282 chr4 149619586 149619664 -6010456 - B3 SINE B2 -130 86 41 3 1726 1186 35 14 7 chr4 149619664 149619809 -6010311 - B1_Mm SINE Alu 0 147 2 3 1726 371 143 0 282 chr4 149619809 149619847 -6010273 - B3 SINE B2 -176 40 3 3 1726 1003 131 67 17 chr4 149620314 149620473 -6009647 + B2_Mm2 SINE B2 1 169 -26 3 1726 621 38 0 0 chr4 149620473 149620553 -6009567 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3 1726 1003 131 67 17 chr4 149620553 149620572 -6009548 + B2_Mm2 SINE B2 170 188 -7 3 1726 246 245 255 0 chr4 149621124 149621222 -6008898 + B1_Mur1 SINE Alu 13 135 -14 3 1726 305 333 84 15 chr4 149621252 149621383 -6008737 + B1F1 SINE Alu 1 140 -9 3 1726 343 306 10 20 chr4 149621289 149621389 -6008731 + ID_B1 SINE B4 123 221 -3 3 1726 341 336 48 16 chr4 149622413 149622537 -6007583 - B1F SINE Alu -13 136 9 4 1726 231 262 16 32 chr4 149623402 149623465 -6006655 + B1_Mur4 SINE Alu 86 147 -3 4 1726 263 350 31 0 chr4 149624099 149624196 -6005924 + PB1D10 SINE Alu 1 100 -17 4 1726 448 291 43 69 chr4 149624305 149624493 -6005627 - B3A SINE B2 0 198 16 4 1726 639 224 122 0 chr4 149624585 149624732 -6005388 - B3 SINE B2 -17 199 35 4 1726 216 194 159 29 chr4 149624972 149625041 -6005079 - MER5B DNA MER1_type -99 79 2 4 1726 182 339 145 0 chr4 149625352 149625414 -6004706 + MIR SINE MIR 4 74 -188 4 1726 845 175 4 4 chr4 149625659 149625898 -6004222 + (TG)n Simple_repeat Simple_repeat 1 239 0 4 1726 392 258 36 1 chr4 149626335 149626440 -6003680 - B1F SINE Alu -34 114 5 4 1726 245 308 66 33 chr4 149626440 149626455 -6003665 - B4 SINE B4 -87 204 81 4 1726 1155 77 0 0 chr4 149626495 149626638 -6003482 + B1_Mus2 SINE Alu 2 144 -3 4 1726 230 0 0 32 chr4 149626638 149626669 -6003451 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1726 257 333 20 0 chr4 149626683 149626782 -6003338 - RMER12 LTR ERVK -474 848 748 4 1726 461 177 184 78 chr4 149626754 149626895 -6003225 - B3 SINE B2 -34 182 27 4 1726 21 36 0 0 chr4 149626895 149626923 -6003197 + AT_rich Low_complexity Low_complexity 1 28 0 4 1726 943 144 0 20 chr4 149626926 149627075 -6003045 - B1_Mur4 SINE Alu -1 149 4 4 1726 1083 179 97 0 chr4 149627266 149627462 -6002658 + B3 SINE B2 2 216 0 4 1726 397 248 63 63 chr4 149627582 149627596 -6002524 - B2_Mm2 SINE B2 0 195 182 4 1726 1594 36 0 30 chr4 149627596 149627795 -6002325 - B2_Mm1a SINE B2 0 193 1 4 1726 536 217 89 13 chr4 149627795 149627939 -6002181 - B3A SINE B2 -14 181 38 4 1726 1370 94 16 10 chr4 149627941 149628134 -6001986 - B2_Mm2 SINE B2 0 195 2 4 1726 312 48 0 0 chr4 149628150 149628192 -6001928 + (TTG)n Simple_repeat Simple_repeat 1 42 0 4 1726 1182 15 8 0 chr4 149628192 149628325 -6001795 - B1_Mus2 SINE Alu -13 134 1 4 1726 491 242 0 0 chr4 149628411 149628506 -6001614 - BC1_Mm scRNA scRNA -57 95 1 4 1726 307 220 252 71 chr4 149628543 149628670 -6001450 - RSINE1 SINE B4 0 165 16 4 1726 312 91 0 0 chr4 149629627 149629671 -6000449 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 4 1726 1299 34 0 0 chr4 149629673 149629820 -6000300 - B1_Mus1 SINE Alu -1 147 1 4 1726 723 191 57 0 chr4 149630303 149630444 -5999676 - B3 SINE B2 -67 149 1 4 1726 335 197 197 0 chr4 149630454 149630530 -5999590 - PB1D10 SINE Alu 0 117 27 4 1726 490 249 126 5 chr4 149630579 149630785 -5999335 - L1M4 LINE L1 -856 5290 5060 4 1726 544 231 9 18 chr4 149630799 149631246 -5998874 + (TATG)n Simple_repeat Simple_repeat 1 442 0 4 1726 220 277 0 0 chr4 149632404 149632451 -5997669 + polypyrimidine Low_complexity Low_complexity 2 48 0 4 1726 714 254 54 30 chr4 149633043 149633246 -5996874 + ID_B1 SINE B4 9 216 -8 4 1726 195 184 0 0 chr4 149633270 149633308 -5996812 + GA-rich Low_complexity Low_complexity 6 43 0 4 1726 844 68 51 0 chr4 149633630 149633748 -5996372 - B2_Mm2 SINE B2 -70 125 2 4 1726 382 338 26 26 chr4 149633906 149634058 -5996062 - MER21B LTR ERV1 -233 630 479 4 1726 240 255 41 131 chr4 149633985 149634107 -5996013 + RSINE1 SINE B4 55 165 0 4 1726 615 327 76 14 chr4 149634769 149634980 -5995140 - B4A SINE B4 -12 280 57 4 1726 1072 86 79 18 chr4 149634989 149635154 -5994966 - B2_Mm2 SINE B2 -20 175 1 4 1726 947 254 13 31 chr4 149635216 149635443 -5994677 - ID_B1 SINE B4 0 224 2 4 1726 362 265 58 94 chr4 149635474 149635504 -5994616 - B4A SINE B4 -46 246 219 4 1726 186 43 0 0 chr4 149635504 149635527 -5994593 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 4 1726 941 106 30 0 chr4 149635527 149635659 -5994461 - B1_Mur4 SINE Alu -9 141 6 4 1726 757 284 62 5 chr4 149635684 149635893 -5994227 + ID_B1 SINE B4 2 222 -2 4 1726 305 287 21 21 chr4 149636655 149636751 -5993369 + PB1D10 SINE Alu 11 106 -11 4 1726 343 303 107 0 chr4 149636870 149636992 -5993128 + B1F SINE Alu 9 143 -6 4 1726 264 214 157 0 chr4 149637024 149637094 -5993026 + ID4_ SINE ID 3 83 0 4 1726 707 218 140 0 chr4 149637491 149637670 -5992450 - B3 SINE B2 -11 205 2 4 1726 662 169 87 16 chr4 149638159 149638285 -5991835 + B1_Mur4 SINE Alu 16 150 0 4 1726 559 279 24 6 chr4 149638601 149638767 -5991353 + Charlie1 DNA MER1_type 51 219 -2562 4 1726 569 242 84 0 chr4 149638767 149638945 -5991175 - L1MCa LINE L1 -5673 835 643 4 1726 780 216 7 0 chr4 149639040 149639188 -5990932 + B3 SINE B2 1 149 -67 4 1726 341 335 53 53 chr4 149639319 149639508 -5990612 - L1MCa LINE L1 -6318 190 2 4 1726 197 65 32 0 chr4 149639608 149639639 -5990481 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1726 1876 209 56 5 chr4 149639643 149640019 -5990101 + MTD LTR MaLR 25 419 0 4 1726 306 242 30 15 chr4 149640019 149640086 -5990034 + ID4 SINE ID 4 71 -12 4 1726 335 318 22 52 chr4 149640061 149640197 -5989923 - ID_B1 SINE B4 -24 200 69 4 1726 295 256 72 0 chr4 149640269 149640351 -5989769 - PB1D10 SINE Alu -2 125 30 4 1726 1233 278 74 71 chr4 149640637 149641257 -5988863 - L2 LINE L2 -1617 1802 1181 4 1726 240 250 0 0 chr4 149641439 149641487 -5988633 + ID_B1 SINE B4 168 215 -9 4 1726 383 266 0 48 chr4 149641521 149641604 -5988516 + RSINE1 SINE B4 59 137 -28 4 1726 185 0 0 39 chr4 149641631 149641657 -5988463 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1726 25 31 0 0 chr4 149641672 149641704 -5988416 + AT_rich Low_complexity Low_complexity 1 32 0 4 1726 236 204 0 22 chr4 149641704 149641749 -5988371 + B4A SINE B4 1 44 -248 4 1726 482 252 72 0 chr4 149641775 149641886 -5988234 + PB1D9 SINE Alu 2 120 0 4 1726 222 91 0 52 chr4 149641909 149641967 -5988153 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 4 1726 362 341 143 8 chr4 149642064 149642197 -5987923 + ID_B1 SINE B4 15 165 -59 4 1726 991 45 102 29 chr4 149642197 149642334 -5987786 + B1_Mus1 SINE Alu 2 148 0 4 1726 201 94 0 0 chr4 149642337 149642369 -5987751 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1726 214 214 0 0 chr4 149642444 149642486 -5987634 - ID4_ SINE ID -41 42 1 4 1726 574 224 202 45 chr4 149642520 149642698 -5987422 - B3 SINE B2 -10 206 1 4 1726 258 250 179 32 chr4 149642795 149642890 -5987230 + MLT1M LTR MaLR 3 111 -297 4 1726 270 180 0 0 chr4 149643206 149643267 -5986853 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1726 668 241 95 106 chr4 149643323 149643606 -5986514 - B4A SINE B4 0 292 13 4 1726 189 0 0 0 chr4 149643811 149643832 -5986288 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1726 303 331 89 18 chr4 149643833 149644002 -5986118 + MLT1M LTR MaLR 257 437 -235 4 1726 574 271 42 0 chr4 149644200 149644344 -5985776 - RSINE1 SINE B4 -13 152 3 4 1726 1226 49 0 0 chr4 149644407 149644549 -5985571 - B1_Mus1 SINE Alu -5 143 2 4 1726 473 289 90 48 chr4 149644577 149644766 -5985354 + B3A SINE B2 1 197 -1 4 1726 452 202 122 41 chr4 149644787 149644885 -5985235 + B1_Mus2 SINE Alu 1 106 -41 4 1726 302 321 0 12 chr4 149644962 149645047 -5985073 - RSINE1 SINE B4 -80 85 2 4 1726 318 67 0 0 chr4 149645054 149645099 -5985021 + (T)n Simple_repeat Simple_repeat 1 45 0 4 1726 1273 48 0 0 chr4 149645100 149645247 -5984873 - B1_Mus1 SINE Alu 0 148 2 4 1726 517 250 19 0 chr4 149645259 149645367 -5984753 - PB1D9 SINE Alu -8 112 3 4 1726 288 0 0 0 chr4 149645369 149645401 -5984719 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1726 388 286 50 57 chr4 149645449 149645590 -5984530 - RSINE1 SINE B4 -21 144 5 4 1726 651 253 173 5 chr4 149645594 149645785 -5984335 - ID_B1 SINE B4 0 224 2 4 1726 223 167 0 23 chr4 149645785 149645828 -5984292 - B3 SINE B2 -174 42 1 4 1726 1067 59 2 6 chr4 149645848 149645992 -5984128 - B1_Mus1 SINE Alu 0 148 10 4 1726 867 159 13 27 chr4 149646127 149646276 -5983844 + B1_Mur2 SINE Alu 2 148 -1 4 1726 373 248 40 0 chr4 149646279 149646380 -5983740 + B3 SINE B2 111 215 -1 4 1726 218 300 71 0 chr4 149646406 149646476 -5983644 + ID4 SINE ID 3 77 -6 4 1726 469 330 74 55 chr4 149646813 149647124 -5982996 - AmnSINE1 SINE SINE -50 525 209 4 1726 355 242 192 8 chr4 149647315 149647440 -5982680 - B1F1 SINE Alu -1 148 1 4 1726 318 67 0 0 chr4 149647461 149647506 -5982614 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1726 233 302 59 178 chr4 149647509 149647678 -5982442 - RSINE1 SINE B4 -14 151 3 4 1726 527 43 0 14 chr4 149647891 149647917 -5982203 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 4 1726 1598 52 0 5 chr4 149647917 149648111 -5982009 - B2_Mm1a SINE B2 0 193 1 4 1726 527 43 0 14 chr4 149648111 149648155 -5981965 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 4 1726 1237 42 0 0 chr4 149648155 149648299 -5981821 - B1_Mus1 SINE Alu 0 148 5 4 1726 21 0 0 0 chr4 149648555 149648576 -5981544 + AT_rich Low_complexity Low_complexity 1 21 0 4 1726 286 313 84 78 chr4 149648768 149648862 -5981258 - RSINE1 SINE B4 -17 148 50 4 1726 1227 54 0 0 chr4 149648862 149649009 -5981111 - B1_Mus2 SINE Alu 0 147 1 4 1726 351 0 0 0 chr4 149649010 149649049 -5981071 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1726 286 313 84 78 chr4 149649049 149649094 -5981026 - RSINE1 SINE B4 -116 49 6 4 1726 579 271 15 15 chr4 149649186 149649321 -5980799 + B1_Mur1 SINE Alu 9 143 -6 5 1726 683 81 10 0 chr4 149649339 149649438 -5980682 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 5 1726 802 55 85 106 chr4 149649438 149649478 -5980642 + B2_Mm2 SINE B2 2 40 -155 5 1726 1241 41 7 0 chr4 149649478 149649623 -5980497 + B1_Mm SINE Alu 2 147 0 5 1726 207 0 0 0 chr4 149649625 149649648 -5980472 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1726 802 55 85 106 chr4 149649648 149649745 -5980375 + B2_Mm2 SINE B2 41 139 -56 5 1726 935 222 38 43 chr4 149649774 149650009 -5980111 - MTE2b LTR MaLR -109 270 37 5 1726 250 296 87 16 chr4 149649911 149650038 -5980082 - MT2A LTR ERVL -396 137 2 5 1726 260 218 0 18 chr4 149650049 149650105 -5980015 - MTE2b LTR MaLR -322 57 3 5 1726 507 73 0 0 chr4 149650109 149650177 -5979943 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 5 1726 562 234 0 9 chr4 149650180 149650288 -5979832 - PB1D10 SINE Alu -10 107 1 5 1726 633 269 30 20 chr4 149650366 149650567 -5979553 - B3 SINE B2 -13 203 1 5 1726 995 224 30 10 chr4 149650610 149650813 -5979307 - B3 SINE B2 -2 214 8 5 1726 1511 52 0 30 chr4 149650842 149651042 -5979078 - B2_Mm2 SINE B2 0 195 2 5 1726 1074 103 0 0 chr4 149651265 149651411 -5978709 + B1_Mus2 SINE Alu 2 147 0 5 1726 375 154 0 0 chr4 149651411 149651476 -5978644 + A-rich Low_complexity Low_complexity 1 65 0 5 1726 1174 232 0 5 chr4 149651483 149651695 -5978425 + B3 SINE B2 6 216 0 5 1726 234 286 0 0 chr4 149651742 149651791 -5978329 + ID_B1 SINE B4 153 201 -23 5 1726 433 342 25 19 chr4 149651979 149652140 -5977980 + MIRb SINE MIR 88 249 -19 5 1726 286 170 0 19 chr4 149652374 149652428 -5977692 + ID_B1 SINE B4 110 162 -62 5 1726 312 285 181 58 chr4 149652429 149652486 -5977634 + RSINE1 SINE B4 9 66 -99 5 1726 1613 148 146 9 chr4 149652486 149652814 -5977306 - ORR1D1 LTR MaLR -1 373 1 5 1726 312 285 181 58 chr4 149652814 149652894 -5977226 + RSINE1 SINE B4 67 163 -2 5 1726 502 179 10 31 chr4 149652937 149653035 -5977085 - B1_Mur2 SINE Alu -5 144 49 5 1726 1260 104 16 11 chr4 149653092 149653277 -5976843 + B2_Mm2 SINE B2 2 187 -8 5 1726 25 31 0 0 chr4 149653313 149653345 -5976775 + AT_rich Low_complexity Low_complexity 1 32 0 5 1726 615 296 9 67 chr4 149653357 149653371 -5976749 - B3A SINE B2 0 198 185 5 1726 1678 16 5 5 chr4 149653371 149653564 -5976556 - B2_Mm1a SINE B2 0 193 1 5 1726 615 296 9 67 chr4 149653564 149653759 -5976361 - B3A SINE B2 -14 184 1 5 1726 664 243 0 40 chr4 149654539 149654689 -5975431 - B1F2 SINE Alu 0 149 6 5 1726 655 211 34 45 chr4 149654784 149654963 -5975157 - B3A SINE B2 -2 196 20 5 1726 414 185 0 0 chr4 149655448 149655529 -5974591 + A-rich Low_complexity Low_complexity 1 81 0 5 1726 30 77 0 0 chr4 149656043 149656108 -5974012 + GC_rich Low_complexity Low_complexity 1 65 0 5 1726 21 0 0 0 chr4 149656203 149656224 -5973896 + GC_rich Low_complexity Low_complexity 1 21 0 5 1726 347 56 19 0 chr4 149657452 149657506 -5972614 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1726 321 47 0 0 chr4 149658009 149658052 -5972068 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1726 234 59 0 0 chr4 149658886 149658905 -5971215 + (T)n Simple_repeat Simple_repeat 1 19 0 5 1726 1713 26 0 0 chr4 149658905 149659098 -5971022 - B2_Mm1t SINE B2 0 193 1 5 1726 234 59 0 0 chr4 149659098 149659112 -5971008 + (T)n Simple_repeat Simple_repeat 1 14 0 5 1726 1306 27 0 0 chr4 149659564 149659711 -5970409 - B1_Mus2 SINE Alu 0 147 1 5 1726 485 234 30 0 chr4 149660610 149660720 -5969400 - PB1D7 SINE Alu 0 120 8 5 1726 850 225 74 10 chr4 149660853 149661055 -5969065 + B3 SINE B2 2 216 0 5 1726 507 187 125 39 chr4 149661087 149661215 -5968905 + B1_Mur1 SINE Alu 4 142 -7 5 1726 436 264 37 44 chr4 149661281 149661416 -5968704 - RSINE1 SINE B4 -29 136 3 5 1726 340 206 15 0 chr4 149661482 149661550 -5968570 - ID_B1 SINE B4 0 224 156 5 1726 25 0 0 0 chr4 149661570 149661595 -5968525 + AT_rich Low_complexity Low_complexity 1 25 0 5 1726 1198 105 20 45 chr4 149661595 149661794 -5968326 - B2_Mm2 SINE B2 0 195 2 5 1726 804 142 52 7 chr4 149661844 149661979 -5968141 - B1_Mus1 SINE Alu -2 146 6 5 1726 1136 76 0 14 chr4 149662070 149662217 -5967903 - B1_Mm SINE Alu -2 145 1 5 1726 444 37 0 0 chr4 149662878 149662932 -5967188 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1726 818 182 218 0 chr4 149663159 149663329 -5966791 - B3 SINE B2 -9 207 1 5 1726 227 294 14 14 chr4 149663365 149663434 -5966686 - ID4 SINE ID 0 83 15 5 1726 279 204 76 29 chr4 149664308 149664387 -5965733 - PB1D7 SINE Alu -4 123 50 5 1726 471 313 99 0 chr4 149664531 149664662 -5965458 + RSINE1 SINE B4 5 148 -17 5 1726 1064 109 0 13 chr4 149664676 149664825 -5965295 - B1_Mus2 SINE Alu 0 147 1 5 1726 996 68 105 0 chr4 149665093 149665226 -5964894 - B1_Mm SINE Alu 0 147 1 5 1726 559 264 226 111 chr4 149665455 149665808 -5964312 - MLT1F1 LTR MaLR -24 545 137 5 1726 864 179 7 0 chr4 149665808 149665948 -5964172 - B1_Mur1 SINE Alu -5 144 4 5 1726 559 264 226 111 chr4 149665948 149666063 -5964057 - MLT1F1 LTR MaLR -433 136 23 5 1726 855 230 22 17 chr4 149666081 149666262 -5963858 + B3 SINE B2 32 213 -3 5 1726 1065 72 65 0 chr4 149666265 149666403 -5963717 + B1_Mus1 SINE Alu 2 148 0 5 1726 204 40 0 0 chr4 149666403 149666428 -5963692 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1726 443 322 66 0 chr4 149666712 149666833 -5963287 - B4A SINE B4 0 292 164 5 1726 562 156 0 0 chr4 149667034 149667066 -5963054 - B1_Mus2 SINE Alu -17 130 41 5 1726 231 271 0 79 chr4 149667066 149667124 -5962996 - RLTR25A LTR ERVK -531 572 518 5 1726 3085 50 42 3 chr4 149667124 149667507 -5962613 - MTB LTR MaLR 0 400 3 5 1726 1188 34 0 33 chr4 149667508 149667659 -5962461 + B1_Mus1 SINE Alu 2 147 -1 5 1726 231 271 0 79 chr4 149667659 149667674 -5962446 - RLTR25A LTR ERVK -586 517 503 5 1726 353 317 48 21 chr4 149667839 149667984 -5962136 + B1F2 SINE Alu 1 149 0 5 1726 234 0 0 0 chr4 149667984 149668010 -5962110 + (CAAAAA)n Simple_repeat Simple_repeat 1 26 0 5 1726 225 103 77 0 chr4 149668011 149668050 -5962070 + (CAAAC)n Simple_repeat Simple_repeat 4 45 0 5 1726 1179 101 73 0 chr4 149668718 149668896 -5961224 - B2_Mm2 SINE B2 -3 192 2 5 1726 430 291 94 50 chr4 149669102 149669283 -5960837 - B3A SINE B2 -26 190 2 5 1726 593 91 139 43 chr4 149669310 149669425 -5960695 + B1_Mus1 SINE Alu 23 148 0 5 1726 981 133 0 39 chr4 149669577 149669733 -5960387 - B1_Mur4 SINE Alu 0 150 1 5 1726 419 243 18 36 chr4 149669968 149670079 -5960041 - B1F2 SINE Alu -1 148 40 5 1726 640 301 12 0 chr4 149670115 149670278 -5959842 + B3A SINE B2 3 167 -31 5 1726 237 309 0 0 chr4 149670282 149670350 -5959770 + (CGTG)n Simple_repeat Simple_repeat 4 71 0 5 1726 719 216 0 29 chr4 149670376 149670514 -5959606 + B1_Mur4 SINE Alu 10 143 -7 5 1726 594 210 0 6 chr4 149670728 149670847 -5959273 + B1_Mur1 SINE Alu 16 128 -21 5 1726 855 201 12 12 chr4 149670852 149671023 -5959097 + B3 SINE B2 43 213 -3 5 1726 290 310 0 12 chr4 149672086 149672171 -5957949 - ID SINE ID -140 84 1 5 1726 330 132 0 0 chr4 149672476 149672529 -5957591 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 5 1726 294 305 10 31 chr4 149672529 149672627 -5957493 + B1_Mur1 SINE Alu 40 135 -14 5 1726 414 152 0 0 chr4 149672634 149672700 -5957420 - B1_Mus2 SINE Alu -50 97 32 5 1726 1167 106 53 0 chr4 149672711 149672881 -5957239 - B2_Mm2 SINE B2 -15 180 2 5 1726 660 287 64 6 chr4 149672884 149673056 -5957064 - B3 SINE B2 -20 196 15 5 1726 559 132 17 86 chr4 149673110 149673226 -5956894 + B1_Mur2 SINE Alu 31 138 -11 5 1726 1050 158 45 0 chr4 149673626 149673828 -5956292 - URR1A DNA MER1_type -1 225 15 5 1726 353 263 112 8 chr4 149673839 149673973 -5956147 - B1F2 SINE Alu -1 148 1 5 1726 21 0 0 0 chr4 149673975 149673996 -5956124 + AT_rich Low_complexity Low_complexity 1 21 0 5 1726 1699 26 0 0 chr4 149674014 149674207 -5955913 + B2_Mm1a SINE B2 1 193 0 5 1726 266 240 52 26 chr4 149674215 149674292 -5955828 + ID4_ SINE ID 3 81 -2 5 1726 1454 75 5 0 chr4 149674353 149674540 -5955580 + B2_Mm1a SINE B2 1 188 -5 5 1726 637 298 98 27 chr4 149674552 149674887 -5955233 + ORR1E LTR MaLR 1 359 0 5 1726 192 77 0 0 chr4 149675128 149675154 -5954966 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1726 31 0 0 0 chr4 149675328 149675359 -5954761 + AT_rich Low_complexity Low_complexity 1 31 0 5 1726 816 185 13 27 chr4 149675638 149675788 -5954332 + B1_Mur2 SINE Alu 2 149 0 5 1726 1220 55 0 0 chr4 149676006 149676152 -5953968 + B1_Mus2 SINE Alu 1 146 -1 5 1726 1035 195 25 5 chr4 149676688 149676889 -5953231 - B3 SINE B2 -9 207 3 5 1726 440 309 65 13 chr4 149677147 149677377 -5952743 - B4A SINE B4 -35 257 2 5 1726 387 307 7 59 chr4 149677467 149677602 -5952518 - ID_B1 SINE B4 -86 138 11 5 1726 1198 41 7 0 chr4 149677624 149677769 -5952351 - B1_Mus2 SINE Alu 0 147 2 5 1726 245 340 56 9 chr4 149677778 149677885 -5952235 - PB1D10 SINE Alu -5 112 1 5 1726 279 0 0 0 chr4 149678611 149678642 -5951478 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1726 213 240 0 0 chr4 149678642 149678692 -5951428 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1726 973 125 0 0 chr4 149678692 149678828 -5951292 - B1_Mus1 SINE Alu -12 136 1 6 1726 23 33 0 0 chr4 149678828 149678858 -5951262 + AT_rich Low_complexity Low_complexity 1 30 0 6 1726 928 99 0 78 chr4 149679867 149680021 -5950099 + B1_Mus1 SINE Alu 1 142 -6 6 1726 539 160 11 0 chr4 149680061 149680155 -5949965 + ID_B1 SINE B4 129 223 -1 6 1726 23 0 0 0 chr4 149680402 149680425 -5949695 + AT_rich Low_complexity Low_complexity 1 23 0 6 1726 200 111 28 0 chr4 149680555 149680591 -5949529 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 6 1726 541 206 42 14 chr4 149680593 149680736 -5949384 - B1_Mur4 SINE Alu -3 147 1 6 1726 477 200 72 144 chr4 149680741 149680922 -5949198 - B2_Mm2 SINE B2 -6 189 22 6 1726 1528 54 27 0 chr4 149681621 149681807 -5948313 - B2_Mm1a SINE B2 -2 191 1 6 1726 306 287 32 0 chr4 149681831 149681925 -5948195 + B4A SINE B4 27 123 -169 6 1726 200 157 0 38 chr4 149681928 149681981 -5948139 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1726 603 302 112 12 chr4 149682399 149682861 -5947259 - L2a LINE L2 -268 3158 2642 6 1726 730 123 53 15 chr4 149683095 149683227 -5946893 + URR1A DNA MER1_type 57 193 -33 6 1726 1234 48 0 0 chr4 149683912 149684059 -5946061 + B1_Mus1 SINE Alu 2 148 0 6 1727 3739 127 51 5 chr4 149684491 149685123 -5944997 - RLTR17 LTR ERVK -31 661 1 6 1727 299 276 0 0 chr4 149685123 149685178 -5944942 + RSINE1 SINE B4 109 163 -2 6 1727 320 288 72 66 chr4 149685556 149685853 -5944267 - MLT1C LTR MaLR -96 531 43 6 1727 304 302 49 60 chr4 149686034 149686217 -5943903 - L2 LINE L2 -687 2732 2552 6 1727 24 0 0 0 chr4 149686284 149686308 -5943812 + AT_rich Low_complexity Low_complexity 1 24 0 6 1727 772 104 160 0 chr4 149686667 149686792 -5943328 + B1_Mus1 SINE Alu 2 146 -2 6 1727 1671 118 0 25 chr4 149686940 149687219 -5942901 - RMER4B LTR ERVK -313 272 1 6 1727 325 200 15 0 chr4 149687219 149687284 -5942836 - Lx7 LINE L1 -413 7283 7218 6 1727 1319 40 0 22 chr4 149687285 149687305 -5942815 - B2_Mm1a SINE B2 -16 177 161 6 1727 243 0 0 0 chr4 149687305 149687332 -5942788 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1727 1319 40 0 22 chr4 149687332 149687492 -5942628 - B2_Mm1a SINE B2 -33 160 1 6 1727 4030 176 10 18 chr4 149687492 149688210 -5941910 - Lx7 LINE L1 -474 7222 6286 6 1727 312 48 0 0 chr4 149688217 149688259 -5941861 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1727 580 116 28 48 chr4 149688261 149688406 -5941714 + (CAGAGA)n Simple_repeat Simple_repeat 2 143 0 6 1727 567 277 7 20 chr4 149688417 149688568 -5941552 - RSINE1 SINE B4 -13 152 4 6 1727 1241 140 22 35 chr4 149688913 149689142 -5940978 + URR1A DNA MER1_type 1 226 0 6 1727 26 30 0 0 chr4 149689182 149689215 -5940905 + AT_rich Low_complexity Low_complexity 1 33 0 6 1727 291 54 0 0 chr4 149689237 149689274 -5940846 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1727 323 241 93 0 chr4 149690006 149690114 -5940006 + PB1D7 SINE Alu 1 117 -3 6 1727 256 254 79 0 chr4 149690153 149690216 -5939904 - ID4 SINE ID -11 72 5 6 1727 329 313 69 46 chr4 149690839 149691013 -5939107 + MIRb SINE MIR 36 213 -55 6 1727 1145 84 66 0 chr4 149691059 149691225 -5938895 + B2_Mm1t SINE B2 2 178 -15 6 1727 180 0 0 0 chr4 149691227 149691247 -5938873 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1727 1252 28 7 0 chr4 149691252 149691397 -5938723 + B1_Mm SINE Alu 2 147 0 6 1727 634 281 81 31 chr4 149692320 149692581 -5937539 + B4A SINE B4 2 275 -17 6 1727 455 0 18 0 chr4 149692602 149692657 -5937463 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1727 1001 58 7 0 chr4 149692667 149692806 -5937314 + B1_Mus2 SINE Alu 8 147 0 6 1727 189 107 0 0 chr4 149692806 149692834 -5937286 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1727 485 204 12 20 chr4 149692864 149692995 -5937125 + B1_Mur2 SINE Alu 1 129 -21 6 1727 742 218 0 45 chr4 149693667 149693821 -5936299 - B1_Mur3 SINE Alu -1 148 2 6 1727 284 221 29 14 chr4 149694524 149694593 -5935527 - B1_Mur3 SINE Alu -79 70 1 6 1727 542 221 93 97 chr4 149694618 149694834 -5935286 - B3 SINE B2 -1 215 1 6 1727 318 26 0 0 chr4 149694868 149694907 -5935213 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 6 1727 1062 68 0 20 chr4 149694933 149695073 -5935047 + B1_Mus2 SINE Alu 2 138 -9 6 1727 267 31 0 0 chr4 149695073 149695105 -5935015 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1727 412 247 0 11 chr4 149695307 149695401 -5934719 + U6 snRNA snRNA 5 97 -10 6 1727 260 182 45 0 chr4 149695422 149695488 -5934632 - MER33 DNA MER1_type -21 303 235 6 1727 576 191 0 0 chr4 149695500 149695615 -5934505 + B1_Mur3 SINE Alu 35 149 0 6 1727 180 0 0 0 chr4 149696043 149696063 -5934057 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 1727 8045 60 1 1 chr4 149696547 149697650 -5932470 + L1_Mus1 LINE L1 5499 6567 0 6 1727 275 228 0 0 chr4 149697736 149697793 -5932327 - B4 SINE B4 -12 280 224 6 1727 615 253 0 29 chr4 149697815 149697990 -5932130 - B3A SINE B2 -13 185 16 6 1727 383 284 26 151 chr4 149697998 149698230 -5931890 - B4A SINE B4 -64 228 26 6 1727 836 178 14 7 chr4 149698300 149698447 -5931673 - B1_Mur3 SINE Alu 0 149 2 6 1727 291 339 96 26 chr4 149698575 149698805 -5931315 - ORR1E LTR MaLR -105 254 9 6 1727 848 177 169 11 chr4 149699204 149699387 -5930733 - B3 SINE B2 0 216 5 6 1727 1059 218 81 56 chr4 149699389 149699748 -5930372 - L1MA6 LINE L1 -242 6058 5691 6 1727 521 193 33 25 chr4 149700269 149700391 -5929729 - L1M4 LINE L1 -507 5677 5555 6 1727 1103 246 119 3 chr4 149700391 149700726 -5929394 + MTD LTR MaLR 25 398 -21 6 1727 569 204 69 85 chr4 149700887 149701075 -5929045 - B2_Mm2 SINE B2 -10 185 1 6 1727 305 109 0 18 chr4 149701361 149701417 -5928703 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1727 655 320 61 9 chr4 149701420 149701650 -5928470 - B4A SINE B4 -18 274 33 6 1727 281 171 138 64 chr4 149701729 149701823 -5928297 - B3 SINE B2 -15 201 101 6 1727 231 286 183 21 chr4 149701974 149702067 -5928053 - PB1 SINE Alu 0 127 20 6 1727 218 225 171 24 chr4 149702065 149702147 -5927973 - B4 SINE B4 -174 118 25 6 1727 595 190 0 41 chr4 149702151 149702162 -5927958 - PB1D9 SINE Alu -4 116 109 6 1727 293 0 27 0 chr4 149702162 149702199 -5927921 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 6 1727 595 190 0 41 chr4 149702199 149702308 -5927812 - PB1D9 SINE Alu -12 108 1 6 1727 562 72 0 0 chr4 149702656 149702739 -5927381 - L1Md_F3 LINE L1 0 6584 6502 6 1727 866 87 16 0 chr4 149702775 149702902 -5927218 - B2_Mm2 SINE B2 -66 129 1 6 1727 460 272 55 18 chr4 149703005 149703054 -5927066 + ID SINE ID 28 82 -142 6 1727 774 112 24 0 chr4 149703054 149703179 -5926941 + B1_Mur4 SINE Alu 3 130 -20 6 1727 478 224 68 8 chr4 149703209 149703326 -5926794 + B1_Mus2 SINE Alu 1 124 -23 6 1727 4111 149 91 36 chr4 149703951 149704801 -5925319 - RMER19B LTR ERVK -6 896 1 6 1727 21 36 0 0 chr4 149705019 149705047 -5925073 + AT_rich Low_complexity Low_complexity 1 28 0 6 1727 269 303 175 11 chr4 149705618 149705795 -5924325 - B4 SINE B4 -6 286 81 6 1727 849 83 87 33 chr4 149705916 149706066 -5924054 + B2_Mm2 SINE B2 1 158 -37 6 1727 255 61 0 0 chr4 149706066 149706099 -5924021 + (CAAT)n Simple_repeat Simple_repeat 1 33 0 6 1727 859 138 0 21 chr4 149706168 149706309 -5923811 - B1_Mur4 SINE Alu 0 150 13 6 1727 251 175 55 121 chr4 149706229 149706320 -5923800 - 4.5SRNA scRNA scRNA -8 86 2 6 1727 364 219 29 0 chr4 149706405 149706493 -5923627 + PB1D10 SINE Alu 17 109 -11 6 1727 1029 213 45 0 chr4 149706609 149706811 -5923309 - B3 SINE B2 -4 212 2 6 1727 207 204 0 0 chr4 149706818 149706862 -5923258 + CT-rich Low_complexity Low_complexity 1 44 0 6 1727 417 198 80 0 chr4 149706873 149706999 -5923121 - B1F1 SINE Alu -2 148 6 6 1727 255 125 0 0 chr4 149709525 149709565 -5920555 + (TTG)n Simple_repeat Simple_repeat 2 41 0 6 1727 524 288 0 69 chr4 149709665 149709840 -5920280 - B3A SINE B2 0 198 36 6 1727 959 85 15 0 chr4 149710307 149710437 -5919683 + B1_Mus1 SINE Alu 3 134 -14 6 1727 213 132 0 0 chr4 149710459 149710497 -5919623 + (GGA)n Simple_repeat Simple_repeat 3 40 0 6 1727 1018 175 15 24 chr4 149710512 149710717 -5919403 + B3 SINE B2 9 211 -5 6 1727 222 342 41 0 chr4 149710735 149710808 -5919312 + PB1D7 SINE Alu 1 76 -44 6 1727 338 331 94 0 chr4 149710811 149710938 -5919182 + RSINE1 SINE B4 2 140 -25 6 1727 180 0 0 0 chr4 149711269 149711289 -5918831 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1727 318 148 0 0 chr4 149711289 149711343 -5918777 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 6 1727 22 0 0 0 chr4 149711808 149711830 -5918290 + AT_rich Low_complexity Low_complexity 1 22 0 6 1727 1155 61 0 7 chr4 149712091 149712239 -5917881 - B1_Mm SINE Alu 0 147 1 6 1727 383 262 19 19 chr4 149712245 149712350 -5917770 - Lx8 LINE L1 -561 6912 6808 6 1727 1705 26 0 0 chr4 149712533 149712724 -5917396 - B2_Mm1t SINE B2 -1 192 2 6 1727 241 244 158 0 chr4 149713843 149713925 -5916195 + PB1D10 SINE Alu 4 98 -19 6 1727 1167 88 31 57 chr4 149714142 149714336 -5915784 - B2_Mm2 SINE B2 -5 190 2 6 1727 230 203 43 72 chr4 149715459 149715492 -5914628 + MIRm SINE MIR 53 87 -189 7 1727 3169 41 5 71 chr4 149715492 149715709 -5914411 - MTA_Mm LTR MaLR 0 396 192 7 1727 237 33 0 0 chr4 149715709 149715739 -5914381 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1727 3169 41 5 71 chr4 149715739 149715754 -5914366 - MTA_Mm LTR MaLR -205 191 191 7 1727 1077 68 0 52 chr4 149715754 149715908 -5914212 - B1_Mus2 SINE Alu 0 147 2 7 1727 3169 41 5 71 chr4 149715908 149716098 -5914022 - MTA_Mm LTR MaLR -205 191 1 7 1727 230 231 55 59 chr4 149716098 149716173 -5913947 + MIRm SINE MIR 81 156 -106 7 1727 212 231 0 0 chr4 149716350 149716389 -5913731 + B1_Mur4 SINE Alu 2 40 -110 7 1727 717 232 7 0 chr4 149716398 149716540 -5913580 - B1_Mur1 SINE Alu -5 144 2 7 1727 886 184 105 0 chr4 149716553 149716743 -5913377 - B3 SINE B2 -1 215 6 7 1727 246 105 0 0 chr4 149716749 149716787 -5913333 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 7 1727 544 83 0 45 chr4 149716789 149716877 -5913243 - B1_Mus2 SINE Alu 0 147 64 7 1727 633 294 0 0 chr4 149717016 149717159 -5912961 + B3A SINE B2 5 147 -51 7 1727 329 109 0 18 chr4 149717187 149717243 -5912877 + (GGA)n Simple_repeat Simple_repeat 3 57 0 7 1727 426 296 0 17 chr4 149717252 149717369 -5912751 + PB1D10 SINE Alu 1 115 -2 7 1727 399 269 17 9 chr4 149718123 149718239 -5911881 + B1F SINE Alu 6 122 -27 7 1727 377 40 0 0 chr4 149718479 149718529 -5911591 - MTB LTR MaLR 0 400 351 7 1727 1701 196 149 60 chr4 149718835 149719319 -5910801 + MT2A LTR ERVL 3 529 -4 7 1727 504 0 0 0 chr4 149719499 149719555 -5910565 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 7 1727 461 70 42 0 chr4 149719555 149719626 -5910494 - B2_Mm2 SINE B2 -15 180 107 7 1727 31 0 0 0 chr4 149719646 149719677 -5910443 + AT_rich Low_complexity Low_complexity 1 31 0 7 1727 1164 55 7 0 chr4 149719691 149719836 -5910284 + B1_Mus1 SINE Alu 2 147 -1 7 1727 1138 88 51 28 chr4 149719847 149720023 -5910097 - B2_Mm2 SINE B2 -14 181 2 7 1727 732 142 0 59 chr4 149720457 149720592 -5909528 - B1_Mur3 SINE Alu 0 149 23 7 1727 201 147 0 0 chr4 149721195 149721229 -5908891 + (AGGGGG)n Simple_repeat Simple_repeat 2 35 0 7 1727 224 337 32 21 chr4 149722142 149722236 -5907884 - B1F1 SINE Alu -51 98 4 7 1727 250 133 32 32 chr4 149722330 149722392 -5907728 + C-rich Low_complexity Low_complexity 1 62 0 7 1727 212 328 0 59 chr4 149722400 149722468 -5907652 - ID4_ SINE ID -17 66 3 7 1727 25 31 0 0 chr4 149722639 149722671 -5907449 + AT_rich Low_complexity Low_complexity 1 32 0 7 1727 252 0 0 0 chr4 149722689 149722717 -5907403 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1727 503 198 20 10 chr4 149722815 149722917 -5907203 - RSINE1 SINE B4 -38 127 25 7 1727 288 53 0 0 chr4 149722943 149722981 -5907139 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1727 467 300 7 21 chr4 149722993 149723136 -5906984 - B3 SINE B2 -75 141 1 7 1727 347 292 26 9 chr4 149723142 149723256 -5906864 - PB1D10 SINE Alu -1 116 1 7 1727 308 218 230 0 chr4 149723562 149723649 -5906471 + B3 SINE B2 24 130 -86 7 1727 483 18 0 0 chr4 149723673 149723729 -5906391 + (TAA)n Simple_repeat Simple_repeat 2 57 0 7 1727 534 31 0 0 chr4 149723880 149723944 -5906176 + (TCC)n Simple_repeat Simple_repeat 1 64 0 7 1727 827 159 20 27 chr4 149724177 149724326 -5905794 - B1_Mur4 SINE Alu -1 149 2 7 1727 929 201 55 5 chr4 149724363 149724563 -5905557 - B3 SINE B2 -6 210 1 7 1727 273 348 71 16 chr4 149724565 149724749 -5905371 - MER58B DNA MER1_type -84 257 64 7 1727 266 283 11 0 chr4 149724886 149724978 -5905142 - BC1_Mm scRNA scRNA -55 97 5 7 1727 504 262 110 6 chr4 149725056 149725229 -5904891 + B3 SINE B2 1 191 -25 7 1727 617 266 42 24 chr4 149726527 149726739 -5903381 - B3 SINE B2 0 216 1 7 1727 186 174 0 0 chr4 149726766 149726812 -5903308 + T-rich Low_complexity Low_complexity 1 46 0 7 1727 1006 75 6 82 chr4 149726814 149726973 -5903147 - B1_Mus2 SINE Alu 0 147 1 7 1727 360 245 151 14 chr4 149726992 149727190 -5902930 - MLT1C LTR MaLR -166 224 5 7 1727 923 210 29 34 chr4 149727329 149727536 -5902584 + B3 SINE B2 7 212 -4 7 1727 369 317 25 0 chr4 149727658 149727778 -5902342 + MLT1C LTR MaLR 313 435 -32 7 1727 1282 7 7 0 chr4 149728106 149728252 -5901868 - B1_Mm SINE Alu 0 147 1 7 1727 411 274 9 0 chr4 149728320 149728426 -5901694 + B3 SINE B2 10 116 -100 7 1727 233 244 19 126 chr4 149728638 149728741 -5901379 - ID_B1 SINE B4 -2 222 131 7 1727 374 252 24 98 chr4 149728801 149728924 -5901196 - PB1D10 SINE Alu -2 118 5 7 1727 195 100 0 0 chr4 149729752 149729782 -5900338 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 7 1727 339 256 39 116 chr4 149729799 149729980 -5900140 - B4A SINE B4 -118 174 8 7 1727 1557 144 136 7 chr4 149730263 149730564 -5899556 + MTC LTR MaLR 12 351 -70 7 1727 349 171 39 42 chr4 149731063 149731159 -5898961 - ID4_ SINE ID -54 98 8 7 1727 366 23 0 0 chr4 149731184 149731227 -5898893 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 7 1727 513 0 0 0 chr4 149731371 149731428 -5898692 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 7 1727 1441 57 23 0 chr4 149731428 149731605 -5898515 - B2_Mm2 SINE B2 -14 181 1 7 1727 220 262 100 0 chr4 149731872 149731952 -5898168 - RSINE1 SINE B4 0 165 78 7 1727 1475 180 25 11 chr4 149731980 149732255 -5897865 - MTC LTR MaLR -62 359 81 7 1727 225 178 0 0 chr4 149732264 149732309 -5897811 + CT-rich Low_complexity Low_complexity 4 48 0 7 1727 468 0 0 0 chr4 149732337 149732389 -5897731 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1727 805 129 61 0 chr4 149732389 149732521 -5897599 - B1_Mur4 SINE Alu -7 143 4 7 1727 2112 87 39 63 chr4 149733496 149733559 -5896561 - ORR1A2 LTR MaLR 0 327 271 7 1727 715 119 254 0 chr4 149733559 149733677 -5896443 - B1_Mus1 SINE Alu 0 148 1 7 1727 588 29 0 0 chr4 149733677 149733747 -5896373 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 7 1727 1413 67 0 6 chr4 149733747 149733927 -5896193 - B2_Mm2 SINE B2 -16 179 1 7 1727 2112 87 39 63 chr4 149733927 149734194 -5895926 - ORR1A2 LTR MaLR -57 270 5 7 1727 255 61 0 0 chr4 149734198 149734231 -5895889 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1727 350 277 36 61 chr4 149734347 149734512 -5895608 - B4A SINE B4 -114 178 18 7 1727 31 26 0 0 chr4 149734696 149734734 -5895386 + AT_rich Low_complexity Low_complexity 1 38 0 7 1727 1107 96 0 0 chr4 149734815 149734961 -5895159 + B1_Mus2 SINE Alu 2 147 0 7 1727 349 157 0 14 chr4 149735960 149736031 -5894089 - B1F2 SINE Alu -40 109 40 7 1727 180 0 0 0 chr4 149736057 149736077 -5894043 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1727 384 306 0 35 chr4 149737551 149737666 -5892454 + PB1D9 SINE Alu 3 113 -7 7 1727 23 54 0 0 chr4 149738079 149738116 -5892004 + AT_rich Low_complexity Low_complexity 1 37 0 7 1727 936 118 36 7 chr4 149738252 149738389 -5891731 - B1_Mus2 SINE Alu -6 141 1 7 1727 454 267 0 10 chr4 149738432 149738534 -5891586 - PB1D9 SINE Alu -18 102 2 7 1727 21 0 0 0 chr4 149739354 149739375 -5890745 + AT_rich Low_complexity Low_complexity 1 21 0 7 1727 231 36 0 0 chr4 149739551 149739579 -5890541 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 7 1727 779 201 0 0 chr4 149739579 149739713 -5890407 - B1_Mus1 SINE Alu -8 140 7 7 1727 612 284 36 18 chr4 149739781 149739946 -5890174 + B3A SINE B2 1 168 -30 7 1727 404 291 0 9 chr4 149740047 149740158 -5889962 - PB1D9 SINE Alu -10 110 1 7 1727 660 214 35 7 chr4 149740217 149740358 -5889762 - B1_Mur2 SINE Alu -1 148 4 7 1727 210 37 0 0 chr4 149740479 149740506 -5889614 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1727 281 273 0 0 chr4 149740532 149740598 -5889522 - ID_B1 SINE B4 -54 170 105 7 1727 1559 67 0 5 chr4 149741328 149741524 -5888596 - B2_Mm2 SINE B2 0 195 1 7 1727 4631 60 0 15 chr4 149741733 149742326 -5887794 + L1_Mus1 LINE L1 5984 6567 0 7 1727 534 244 137 0 chr4 149742548 149742679 -5887441 - B1_Mur1 SINE Alu 0 149 1 7 1727 379 281 53 100 chr4 149742857 149743007 -5887113 - RSINE1 SINE B4 -21 144 2 7 1727 608 246 0 23 chr4 149743268 149743397 -5886723 + RSINE1 SINE B4 11 136 -29 7 1727 729 187 187 0 chr4 149744083 149744265 -5885855 - B3 SINE B2 0 216 1 7 1727 295 287 46 75 chr4 149744283 149744524 -5885596 - RMER2 LTR ERV1 0 567 334 7 1727 22 0 0 0 chr4 149745201 149745223 -5884897 + AT_rich Low_complexity Low_complexity 1 22 0 7 1727 22 0 0 0 chr4 149746127 149746149 -5883971 + GC_rich Low_complexity Low_complexity 1 22 0 7 1727 198 0 0 0 chr4 149746247 149746269 -5883851 + (GGA)n Simple_repeat Simple_repeat 3 24 0 7 1727 453 36 0 0 chr4 149746785 149746840 -5883280 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1727 207 0 0 0 chr4 149746840 149746862 -5883258 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1727 237 33 0 0 chr4 149749454 149749484 -5880636 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 7 1727 659 213 97 26 chr4 149749486 149749640 -5880480 - B3 SINE B2 -51 165 1 7 1727 284 305 38 0 chr4 149749668 149749773 -5880347 - PB1D10 SINE Alu -8 109 1 7 1727 240 253 0 25 chr4 149749878 149749959 -5880161 + (CAGGG)n Simple_repeat Simple_repeat 5 83 0 7 1727 487 226 40 8 chr4 149750249 149750374 -5879746 + B1F SINE Alu 10 138 -11 8 1727 217 176 19 19 chr4 149750374 149750426 -5879694 + B1F SINE Alu 87 138 -11 8 1727 242 192 0 19 chr4 149750426 149750479 -5879641 + B1F SINE Alu 87 138 -11 8 1727 262 170 0 19 chr4 149750479 149750533 -5879587 + B1F SINE Alu 87 139 -10 8 1727 873 257 74 22 chr4 149750910 149751181 -5878939 + B4A SINE B4 1 285 -7 8 1727 342 98 0 0 chr4 149751182 149751233 -5878887 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 8 1727 374 297 96 59 chr4 149751575 149751711 -5878409 - RSINE1 SINE B4 -6 159 19 8 1727 216 0 0 0 chr4 149752075 149752099 -5878021 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1727 468 259 81 7 chr4 149752105 149752241 -5877879 - RSINE1 SINE B4 -18 147 2 8 1727 923 201 65 0 chr4 149753042 149753241 -5876879 - B3 SINE B2 -3 213 2 8 1727 657 252 50 76 chr4 149753400 149753662 -5876458 - MTE2a LTR MaLR 0 379 125 8 1727 301 293 0 96 chr4 149753826 149753840 -5876280 + MT2B LTR ERVL 152 228 -373 8 1727 551 184 48 12 chr4 149753840 149753956 -5876164 + B1_Mur1 SINE Alu 2 118 -31 8 1727 186 43 0 0 chr4 149754309 149754332 -5875788 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1727 453 223 61 54 chr4 149754352 149754499 -5875621 - ORR1D2 LTR MaLR -51 319 172 8 1727 241 197 16 0 chr4 149754900 149754961 -5875159 + T-rich Low_complexity Low_complexity 3 64 0 8 1727 278 245 50 0 chr4 149754962 149755071 -5875049 - B1F2 SINE Alu -1 149 30 8 1727 1073 104 80 0 chr4 149755114 149755277 -5874843 - B2_Mm2 SINE B2 -16 179 4 8 1727 1228 51 0 0 chr4 149755608 149755766 -5874354 + B2_Mm1t SINE B2 1 158 -35 8 1727 225 0 0 0 chr4 149755766 149755791 -5874329 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 1727 891 130 15 124 chr4 149755805 149756007 -5874113 - B2_Mm2 SINE B2 -14 181 2 8 1727 229 279 15 0 chr4 149756837 149756905 -5873215 + MLT1A LTR MaLR 293 361 -13 8 1727 421 304 30 54 chr4 149757128 149757295 -5872825 + RSINE1 SINE B4 3 165 0 8 1727 1064 85 148 30 chr4 149757837 149758006 -5872114 - B2_Mm2 SINE B2 -6 189 1 8 1727 286 248 34 68 chr4 149758275 149758392 -5871728 - L1MB8 LINE L1 0 6178 6066 8 1727 234 0 0 0 chr4 149758406 149758432 -5871688 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 8 1727 778 88 158 0 chr4 149758432 149758546 -5871574 - B1_Mus1 SINE Alu -12 136 5 8 1727 706 53 0 0 chr4 149758896 149758990 -5871130 - B2_Mm2 SINE B2 -78 117 24 8 1727 431 262 23 86 chr4 149759166 149759341 -5870779 - RSINE1 SINE B4 0 165 2 8 1727 365 185 42 42 chr4 149759356 149759452 -5870668 - B1_Mur1 SINE Alu -13 136 41 8 1727 21 36 0 0 chr4 149760263 149760291 -5869829 + AT_rich Low_complexity Low_complexity 1 28 0 8 1727 444 135 0 0 chr4 149760559 149760633 -5869487 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 8 1727 1206 49 7 0 chr4 149761377 149761521 -5868599 - B1_Mus2 SINE Alu -1 146 2 8 1727 223 255 0 0 chr4 149761641 149761720 -5868400 + (CATA)n Simple_repeat Simple_repeat 1 79 0 8 1727 289 235 44 23 chr4 149762508 149762598 -5867522 - PB1D9 SINE Alu -26 123 41 8 1727 366 23 0 0 chr4 149762608 149762651 -5867469 + (CCA)n Simple_repeat Simple_repeat 3 45 0 8 1727 264 298 70 31 chr4 149763500 149763628 -5866492 + MER3 DNA MER1_type 16 148 -61 8 1727 338 281 72 92 chr4 149763885 149764038 -5866082 + ID_B1 SINE B4 2 151 -73 8 1727 250 265 48 12 chr4 149763994 149764078 -5866042 + PB1D9 SINE Alu 27 113 -7 8 1727 726 254 10 20 chr4 149764088 149764285 -5865835 + B3A SINE B2 3 197 -1 8 1727 2296 62 117 7 chr4 149764385 149764692 -5865428 - ORR1A1 LTR MaLR -1 345 5 8 1727 207 0 0 0 chr4 149764924 149764947 -5865173 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1727 1531 43 21 0 chr4 149764947 149765135 -5864985 - B2_Mm2 SINE B2 -2 193 2 8 1727 264 182 0 0 chr4 149765758 149765802 -5864318 - ID4_ SINE ID -15 68 25 8 1727 593 212 87 7 chr4 149766386 149766524 -5863596 - B1_Mur2 SINE Alu 0 149 1 8 1727 190 179 18 18 chr4 149768045 149768102 -5862018 + CT-rich Low_complexity Low_complexity 1 57 0 8 1727 723 113 161 0 chr4 149768254 149768378 -5861742 - B1_Mus2 SINE Alu -2 145 2 8 1727 382 229 98 84 chr4 149769446 149769589 -5860531 - ID_B1 SINE B4 -77 147 3 8 1727 23 0 0 0 chr4 149769675 149769698 -5860422 + AT_rich Low_complexity Low_complexity 1 23 0 8 1727 444 247 73 91 chr4 149769975 149770140 -5859980 - RSINE1 SINE B4 0 165 4 8 1727 216 0 0 0 chr4 149770142 149770166 -5859954 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1727 292 312 45 0 chr4 149770171 149770283 -5859837 - B4 SINE B4 -86 206 90 8 1727 212 291 0 0 chr4 149770837 149770892 -5859228 + T-rich Low_complexity Low_complexity 1 55 0 8 1727 411 317 22 84 chr4 149771680 149771907 -5858213 + MER20 DNA MER1_type 6 218 -1 8 1727 659 265 179 21 chr4 149772030 149772265 -5857855 + B4A SINE B4 1 272 -20 8 1727 237 283 0 0 chr4 149772289 149772342 -5857778 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1727 876 227 43 19 chr4 149772442 149772653 -5857467 - B3 SINE B2 0 216 1 8 1727 785 163 56 7 chr4 149773419 149773561 -5856559 - B1_Mur2 SINE Alu 0 149 1 8 1727 236 150 32 32 chr4 149773602 149773664 -5856456 + T-rich Low_complexity Low_complexity 3 64 0 8 1727 605 182 74 8 chr4 149773680 149773802 -5856318 - B3 SINE B2 -86 130 1 8 1727 499 270 88 39 chr4 149773803 149773822 -5856298 - B3A SINE B2 -2 196 181 8 1727 306 0 0 0 chr4 149773822 149773856 -5856264 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1727 499 270 88 39 chr4 149773856 149774017 -5856103 - B3A SINE B2 -18 180 7 8 1727 403 237 144 0 chr4 149774053 149774150 -5855970 - B1_Mur1 SINE Alu -37 112 2 8 1727 522 182 43 4 chr4 149774356 149774472 -5855648 + B1_Mur2 SINE Alu 2 119 -1 8 1727 202 224 20 0 chr4 149775325 149775374 -5854746 + L2 LINE L2 2501 2550 -869 8 1727 380 222 76 12 chr4 149775779 149775894 -5854226 - B1_Mur3 SINE Alu 0 120 2 8 1727 373 260 86 99 chr4 149775898 149776060 -5854060 - B3A SINE B2 -6 187 28 8 1727 197 302 164 0 chr4 149776475 149776591 -5853529 + L2a LINE L2 3280 3414 -12 8 1727 446 280 47 47 chr4 149777558 149777730 -5852390 - B3 SINE B2 -19 197 26 8 1727 437 239 73 28 chr4 149777735 149777942 -5852178 - B3A SINE B2 0 216 2 8 1727 422 191 26 43 chr4 149778141 149778256 -5851864 - B3 SINE B2 0 216 104 8 1727 494 274 32 0 chr4 149779797 149779921 -5850199 + B3 SINE B2 79 206 -10 8 1727 566 255 22 93 chr4 149779954 149780179 -5849941 - B3 SINE B2 -6 210 2 8 1727 292 270 34 0 chr4 149780457 149780546 -5849574 + (CAGAGA)n Simple_repeat Simple_repeat 5 96 0 8 1727 283 61 20 39 chr4 149781528 149781579 -5848541 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 8 1727 272 224 77 26 chr4 149782313 149782391 -5847729 - ID2 SINE ID -1 82 1 8 1727 306 148 0 0 chr4 149782529 149782583 -5847537 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 8 1727 481 186 68 38 chr4 149782623 149782741 -5847379 - B1_Mur4 SINE Alu -13 137 14 8 1727 290 284 128 0 chr4 149783172 149783274 -5846846 - PB1 SINE Alu -6 121 7 8 1727 407 229 107 14 chr4 149783294 149783428 -5846692 - ID_B1 SINE B4 0 224 81 8 1727 566 178 39 0 chr4 149783582 149783698 -5846422 + PB1D9 SINE Alu 2 120 0 8 1727 249 248 211 46 chr4 149784805 149784957 -5845163 - MLT1C LTR MaLR -243 224 48 8 1727 357 258 111 20 chr4 149785107 149785206 -5844914 - RSINE1 SINE B4 -15 150 43 8 1727 263 280 50 0 chr4 149785595 149785695 -5844425 + MER5A1 DNA MER1_type 61 165 -1 8 1727 1075 35 0 14 chr4 149785988 149786132 -5843988 - B1_Mus1 SINE Alu -1 147 6 8 1727 211 225 0 0 chr4 149786135 149786175 -5843945 - B3A SINE B2 -158 40 1 8 1727 473 301 8 0 chr4 149786393 149786516 -5843604 + RSINE1 SINE B4 2 125 -40 8 1727 350 233 23 11 chr4 149786688 149786775 -5843345 + PB1D10 SINE Alu 29 116 -1 8 1727 266 347 105 12 chr4 149787188 149787360 -5842760 + MER54A LTR ERVL 167 354 -547 8 1727 788 274 35 0 chr4 149787548 149787745 -5842375 + B3 SINE B2 5 208 -8 8 1727 298 313 10 0 chr4 149788817 149788916 -5841204 - MER58B DNA MER1_type -115 226 127 8 1727 234 206 81 14 chr4 149789094 149789168 -5840952 + ID4_ SINE ID 2 80 -3 8 1727 1161 112 53 0 chr4 149790215 149790384 -5839736 + B2_Mm1t SINE B2 2 179 -14 8 1727 278 173 17 33 chr4 149790432 149790507 -5839613 + B2_Mm2 SINE B2 48 125 -91 8 1727 245 98 0 24 chr4 149790513 149790555 -5839565 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 8 1727 393 22 0 0 chr4 149790618 149790664 -5839456 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 8 1727 1112 71 6 6 chr4 149790665 149790822 -5839298 - B2_Mm2 SINE B2 -37 158 2 8 1727 252 0 0 0 chr4 149791002 149791030 -5839090 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1727 225 0 0 0 chr4 149792128 149792153 -5837967 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1727 1626 42 0 0 chr4 149793019 149793210 -5836910 + B2_Mm1a SINE B2 2 192 -1 8 1727 250 208 22 135 chr4 149793285 149793374 -5836746 - PB1D7 SINE Alu 0 120 42 9 1727 23 54 0 0 chr4 149793395 149793432 -5836688 + AT_rich Low_complexity Low_complexity 1 37 0 9 1727 419 295 33 0 chr4 149793537 149793659 -5836461 - B1F1 SINE Alu -14 135 10 9 1727 783 171 0 33 chr4 149794090 149794241 -5835879 - B1_Mur4 SINE Alu -1 149 4 9 1727 318 295 17 124 chr4 149794241 149794258 -5835862 - B4A SINE B4 -56 184 78 9 1727 565 266 80 21 chr4 149794571 149794809 -5835311 - Lx8 LINE L1 -195 7278 7027 9 1727 610 200 88 0 chr4 149795268 149795393 -5834727 - B1F SINE Alu -5 144 9 9 1727 754 142 94 8 chr4 149796266 149796394 -5833726 + B1_Mur4 SINE Alu 2 140 -10 9 1727 220 281 35 0 chr4 149796664 149796721 -5833399 + C-rich Low_complexity Low_complexity 5 63 0 9 1727 642 147 129 0 chr4 149796742 149796858 -5833262 + B1_Mm SINE Alu 9 139 -8 9 1727 259 98 39 19 chr4 149796876 149796928 -5833192 + GA-rich Low_complexity Low_complexity 1 53 0 9 1727 464 250 22 45 chr4 149796935 149797069 -5833051 - B1_Mur3 SINE Alu -13 136 6 9 1727 1204 28 14 0 chr4 149797170 149797314 -5832806 - B1_Mus1 SINE Alu -1 147 2 9 1727 454 169 146 0 chr4 149797805 149797894 -5832226 + B3 SINE B2 1 102 -114 9 1727 244 355 0 25 chr4 149798423 149798504 -5831616 - ID4 SINE ID -1 82 4 9 1727 377 296 18 27 chr4 149798529 149798640 -5831480 - PB1D10 SINE Alu -5 112 3 9 1727 542 15 0 0 chr4 149799155 149799220 -5830900 + L1_Mus2 LINE L1 6498 6562 -4 9 1727 711 254 181 20 chr4 149799614 149799863 -5830257 - B4 SINE B4 -2 290 2 9 1727 287 258 20 20 chr4 149800511 149800610 -5829510 + B4A SINE B4 186 284 -8 9 1727 421 202 101 0 chr4 149802462 149802561 -5827559 + B3 SINE B2 18 126 -90 9 1727 21 0 0 0 chr4 149802916 149802937 -5827183 + AT_rich Low_complexity Low_complexity 1 21 0 9 1727 422 315 0 23 chr4 149803225 149803358 -5826762 - ID_B1 SINE B4 -7 217 88 9 1727 1102 82 7 0 chr4 149805140 149805286 -5824834 - B1_Mus1 SINE Alu -1 147 1 9 1727 21 0 0 0 chr4 149805590 149805611 -5824509 + AT_rich Low_complexity Low_complexity 1 21 0 9 1727 228 300 122 0 chr4 149806289 149806379 -5823741 + PB1D9 SINE Alu 2 102 -18 9 1727 1230 34 0 0 chr4 149807163 149807309 -5822811 + B1_Mus1 SINE Alu 2 147 -1 9 1727 209 224 0 29 chr4 149807372 149807441 -5822679 + (CGTG)n Simple_repeat Simple_repeat 4 70 0 9 1727 288 0 0 0 chr4 149812266 149812298 -5817822 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1727 818 151 14 14 chr4 149812637 149812778 -5817342 - B1_Mur3 SINE Alu -8 141 1 9 1727 240 233 82 0 chr4 149814900 149814973 -5815147 + B1F SINE Alu 1 79 -70 9 1728 1001 286 79 0 chr4 149816063 149816392 -5813728 - MTE2b LTR MaLR -17 362 8 9 1728 441 232 15 46 chr4 149816428 149816559 -5813561 - PB1 SINE Alu 0 127 1 9 1728 315 219 73 98 chr4 149816564 149816745 -5813375 - B3A SINE B2 -1 192 19 9 1728 773 126 73 15 chr4 149817206 149817343 -5812777 + B1_Mur4 SINE Alu 6 150 0 9 1728 274 306 84 101 chr4 149817210 149817388 -5812732 + B4 SINE B4 94 268 -24 9 1728 187 256 0 0 chr4 149817764 149817803 -5812317 + MIR SINE MIR 103 141 -67 9 1728 432 130 0 0 chr4 149817818 149817887 -5812233 + (ATG)n Simple_repeat Simple_repeat 3 71 0 9 1728 500 215 11 0 chr4 149818518 149818611 -5811509 - B1_Mur2 SINE Alu -55 94 1 9 1728 276 247 9 123 chr4 149818527 149818633 -5811487 - MT2B LTR ERVL -361 240 147 9 1728 819 154 0 52 chr4 149818645 149818804 -5811316 - B1_Mur2 SINE Alu -2 313 6 9 1728 920 163 7 0 chr4 149818832 149818979 -5811141 - B1_Mus1 SINE Alu 0 148 1 9 1728 1019 63 0 53 chr4 149819412 149819563 -5810557 + B1_Mus2 SINE Alu 3 145 -2 9 1728 261 0 0 0 chr4 149819575 149819604 -5810516 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 9 1728 259 264 21 42 chr4 149820313 149820408 -5809712 + PB1D10 SINE Alu 2 94 -23 9 1728 224 246 0 129 chr4 149821875 149821945 -5808175 - BC1_Mm scRNA scRNA -82 70 10 9 1728 738 195 164 21 chr4 149822211 149822400 -5807720 - B3 SINE B2 0 216 1 9 1728 493 283 138 6 chr4 149822542 149822723 -5807397 - B3 SINE B2 -7 209 5 9 1728 23 0 0 0 chr4 149823678 149823701 -5806419 + AT_rich Low_complexity Low_complexity 1 23 0 9 1728 303 185 108 11 chr4 149823929 149824022 -5806098 + PB1 SINE Alu 23 124 -3 9 1728 217 348 72 30 chr4 149824332 149824498 -5805622 + MIRc SINE MIR 82 254 -14 9 1728 1375 65 49 0 chr4 149825134 149825319 -5804801 - B2_Mm2 SINE B2 0 195 2 9 1728 391 264 44 35 chr4 149825574 149825688 -5804432 + PB1D10 SINE Alu 3 117 0 9 1728 896 178 319 3 chr4 149826285 149826567 -5803553 - ORR1C1 LTR MaLR 0 378 8 9 1728 328 278 86 41 chr4 149826904 149827125 -5802995 - L1MC5 LINE L1 -1088 6873 6643 9 1728 626 164 43 43 chr4 149828302 149828442 -5801678 + B1_Mus1 SINE Alu 1 140 -8 9 1728 1381 113 0 5 chr4 149829307 149829503 -5800617 - B2_Mm2 SINE B2 0 195 1 9 1728 1554 52 0 5 chr4 149830253 149830445 -5799675 - B2_Mm2 SINE B2 -3 192 2 9 1728 23 0 0 0 chr4 149831007 149831030 -5799090 + AT_rich Low_complexity Low_complexity 1 23 0 9 1728 251 354 94 8 chr4 149832107 149832235 -5797885 - B4A SINE B4 -120 172 34 9 1728 419 327 25 25 chr4 149832397 149832557 -5797563 + RSINE1 SINE B4 5 164 -1 9 1728 246 62 0 0 chr4 149832668 149832700 -5797420 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 9 1728 1368 94 15 20 chr4 149832700 149832895 -5797225 - B2_Mm2 SINE B2 0 195 2 9 1728 814 216 32 68 chr4 149832948 149833167 -5796953 + B3 SINE B2 1 211 -5 9 1728 185 0 0 39 chr4 149833453 149833479 -5796641 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 9 1728 549 44 0 0 chr4 149834032 149834100 -5796020 + (TCC)n Simple_repeat Simple_repeat 1 68 0 9 1728 773 116 14 28 chr4 149834507 149834649 -5795471 - B1_Mur4 SINE Alu 0 150 11 9 1728 283 239 42 14 chr4 149834667 149834739 -5795381 + L1M5 LINE L1 2667 2740 -3406 9 1728 381 295 41 41 chr4 149834867 149835012 -5795108 + RMER30 DNA MER1_type 2 146 -56 9 1728 584 191 126 30 chr4 149836761 149836896 -5793224 + B1_Mur2 SINE Alu 2 149 0 9 1728 506 241 75 8 chr4 149836899 149837033 -5793087 + B3A SINE B2 2 144 -54 9 1728 534 149 433 0 chr4 149837054 149837195 -5792925 + B3 SINE B2 1 202 -14 9 1728 197 178 22 0 chr4 149837223 149837268 -5792852 + GA-rich Low_complexity Low_complexity 3 48 0 9 1728 683 150 122 30 chr4 149837316 149837447 -5792673 + B1_Mur1 SINE Alu 3 145 -4 9 1728 614 235 305 0 chr4 149837662 149837947 -5792173 - ORR1D1 LTR MaLR 0 374 3 9 1728 512 314 28 17 chr4 149838380 149838558 -5791562 - MLT2B3 LTR ERVL -3 551 372 9 1728 1239 37 19 0 chr4 149839302 149839463 -5790657 - B2_Mm2 SINE B2 -30 165 2 9 1728 420 290 40 29 chr4 149843099 149843273 -5786847 + B3A SINE B2 9 184 -14 9 1728 557 237 7 103 chr4 149843808 149843954 -5786166 + RSINE1 SINE B4 34 165 0 9 1728 354 156 0 0 chr4 149844058 149844122 -5785998 + CT-rich Low_complexity Low_complexity 1 64 0 9 1728 1522 171 182 6 chr4 149845076 149845405 -5784715 - ORR1B1 LTR MaLR -7 387 1 9 1728 1169 49 7 0 chr4 149845717 149845861 -5784259 + B1_Mm SINE Alu 1 145 -2 9 1728 1452 71 22 0 chr4 149846297 149846481 -5783639 + B2_Mm2 SINE B2 2 189 -6 9 1728 944 158 130 17 chr4 149846554 149846785 -5783335 - Lx9 LINE L1 -2 7642 7386 9 1728 279 188 0 0 chr4 149846778 149846826 -5783294 + Lx9 LINE L1 6950 6997 -647 9 1728 778 165 0 0 chr4 149849339 149849466 -5780654 - B3 SINE B2 -87 129 3 9 1728 1390 67 17 6 chr4 149849743 149849924 -5780196 - B2_Mm2 SINE B2 -11 184 2 9 1728 1106 83 7 0 chr4 149849953 149850098 -5780022 + B1_Mus2 SINE Alu 2 147 0 9 1728 281 83 42 0 chr4 149850104 149850152 -5779968 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 9 1728 221 294 0 0 chr4 149850882 149850933 -5779187 - B1F1 SINE Alu -86 63 13 9 1728 249 308 63 48 chr4 149850928 149851054 -5779066 + Charlie2a DNA MER1_type 452 579 -2282 9 1728 522 0 0 0 chr4 149851083 149851141 -5778979 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1728 180 0 0 0 chr4 149852029 149852049 -5778071 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1728 1067 99 0 6 chr4 149852050 149852212 -5777908 - B2_Mm2 SINE B2 -34 161 1 9 1728 312 328 0 30 chr4 149852338 149852470 -5777650 + MTD LTR MaLR 88 215 -204 9 1728 1063 62 13 33 chr4 149852482 149852632 -5777488 + B1_Mus2 SINE Alu 1 147 0 9 1728 960 93 0 28 chr4 149852665 149852809 -5777311 + B1_Mus2 SINE Alu 8 147 0 9 1728 258 260 27 14 chr4 149852810 149852884 -5777236 + B2_Mm2 SINE B2 28 102 -93 9 1728 22 70 0 0 chr4 149852939 149852982 -5777138 + AT_rich Low_complexity Low_complexity 1 43 0 9 1728 347 261 16 27 chr4 149853112 149853222 -5776898 + MTD LTR MaLR 291 402 -17 9 1728 738 230 7 0 chr4 149853408 149853556 -5776564 - B1_Mur2 SINE Alu 0 149 1 9 1728 826 179 7 0 chr4 149853694 149853839 -5776281 - B1_Mus1 SINE Alu 0 148 3 9 1728 530 219 29 86 chr4 149853839 149854014 -5776106 + L1M2 LINE L1 2530 2694 -3449 1 1728 633 275 44 20 chr4 149854045 149854249 -5775871 + B3 SINE B2 1 209 -7 1 1728 497 170 308 16 chr4 149854263 149854457 -5775663 - Lx4B LINE L1 -9 7049 6785 1 1728 428 240 208 10 chr4 149854541 149854700 -5775420 + B4 SINE B4 2 213 -79 1 1728 831 157 0 0 chr4 149854705 149854839 -5775281 + B1_Mur4 SINE Alu 9 142 -8 1 1728 243 0 0 0 chr4 149854839 149854866 -5775254 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1728 304 276 108 6 chr4 149854949 149855106 -5775014 + L1M2 LINE L1 2860 3032 -3111 1 1728 1594 136 14 107 chr4 149855267 149855622 -5774498 - RLTRETN_Mm LTR ERVK 0 322 1 1 1728 3418 44 97 2 chr4 149855665 149856097 -5774023 - MT2C_Mm LTR ERVL -2 473 1 1 1728 346 314 40 8 chr4 149856425 149856550 -5773570 + B1F SINE Alu 2 130 -19 1 1728 715 221 32 0 chr4 149856806 149856960 -5773160 + B3 SINE B2 14 172 -44 1 1728 1222 95 62 0 chr4 149857079 149857258 -5772862 + B2_Mm2 SINE B2 1 190 -5 1 1728 237 320 13 13 chr4 149857260 149857336 -5772784 + ID4_ SINE ID 2 77 -6 1 1728 1236 41 0 7 chr4 149857438 149857585 -5772535 + B1_Mus2 SINE Alu 2 147 0 1 1728 409 213 238 7 chr4 149857625 149857776 -5772344 + B3A SINE B2 2 187 -11 1 1728 365 312 206 37 chr4 149857825 149858043 -5772077 + L1M2 LINE L1 4487 4713 -1430 1 1728 180 0 0 0 chr4 149858043 149858063 -5772057 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 1 1728 365 312 206 37 chr4 149858063 149858309 -5771811 + L1M2 LINE L1 4714 5029 -1114 1 1728 227 244 21 43 chr4 149858323 149858417 -5771703 + L1M2 LINE L1 5114 5205 -938 1 1728 489 167 104 0 chr4 149858813 149858909 -5771211 + B1_Mur4 SINE Alu 37 142 -8 1 1728 386 247 7 1 chr4 149860953 149861040 -5769080 - ID_B1 SINE B4 -199 93 2 1 1728 267 93 0 0 chr4 149861603 149861646 -5768474 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 1 1728 420 192 71 33 chr4 149864771 149864954 -5765166 - RMER17C LTR ERVK -136 274 85 1 1728 728 149 0 0 chr4 149865396 149865510 -5764610 - B1_Mur4 SINE Alu -35 115 2 1 1728 223 279 16 16 chr4 149865594 149865656 -5764464 - B1_Mus1 SINE Alu -52 96 35 1 1728 625 224 14 27 chr4 149865702 149865849 -5764271 + B1_Mur1 SINE Alu 5 149 0 1 1728 396 248 95 0 chr4 149866296 149866401 -5763719 - PB1 SINE Alu -2 125 11 1 1728 233 299 0 75 chr4 149866327 149866421 -5763699 - MT2B LTR ERVL -360 241 155 1 1728 228 136 0 0 chr4 149866421 149866455 -5763665 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1728 1100 209 5 0 chr4 149866455 149866665 -5763455 - B3 SINE B2 -5 211 1 1 1728 228 136 0 0 chr4 149866665 149866674 -5763446 + (T)n Simple_repeat Simple_repeat 1 9 0 1 1728 1154 29 29 0 chr4 149866758 149866895 -5763225 - B1_Mus2 SINE Alu -5 142 2 1 1728 327 266 31 0 chr4 149868090 149868198 -5761922 + L1_Mur3 LINE L1 5356 5486 -670 1 1728 1695 31 0 0 chr4 149868200 149868393 -5761727 + B2_Mm1a SINE B2 1 193 0 1 1728 755 226 140 0 chr4 149868428 149868614 -5761506 + B3 SINE B2 5 216 0 1 1728 343 289 90 43 chr4 149868641 149868829 -5761291 + B3A SINE B2 1 197 -1 1 1728 565 306 149 8 chr4 149868842 149869198 -5760922 + L1MA4 LINE L1 5510 5915 -385 1 1728 198 0 0 0 chr4 149869622 149869644 -5760476 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1728 221 239 14 0 chr4 149870504 149870575 -5759545 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1728 529 184 37 0 chr4 149870638 149870747 -5759373 - PB1D9 SINE Alu -6 114 2 1 1728 314 226 51 102 chr4 149870884 149870901 -5759219 + MT2B LTR ERVL 153 163 -438 1 1728 806 167 14 0 chr4 149870901 149871045 -5759075 + B1_Mus1 SINE Alu 2 147 -1 1 1728 295 261 109 0 chr4 149871383 149871475 -5758645 - RSINE1 SINE B4 -62 103 2 1 1728 1660 22 0 0 chr4 149871494 149871678 -5758442 + B2_Mm1a SINE B2 2 185 -8 1 1728 325 350 0 20 chr4 149871698 149871797 -5758323 - RSINE1 SINE B4 -4 161 65 1 1728 288 291 27 42 chr4 149872007 149872124 -5757996 - B1_Mur1 SINE Alu -10 139 22 1 1728 463 241 9 0 chr4 149872406 149872518 -5757602 + B1_Mus2 SINE Alu 35 147 0 1 1728 489 34 0 0 chr4 149872521 149872580 -5757540 + (CAAGC)n Simple_repeat Simple_repeat 2 60 0 1 1728 274 298 107 0 chr4 149873419 149873503 -5756617 + ID_B1 SINE B4 12 104 -120 1 1728 549 154 125 39 chr4 149873532 149873660 -5756460 - B1_Mur4 SINE Alu -7 143 5 1 1728 311 270 34 51 chr4 149873659 149873776 -5756344 + ID_B1 SINE B4 99 213 -11 1 1728 801 189 12 17 chr4 149873819 149873991 -5756129 + B3 SINE B2 4 174 -42 1 1728 417 121 0 0 chr4 149874303 149874386 -5755734 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 1 1728 272 297 106 21 chr4 149874427 149874568 -5755552 - B4A SINE B4 -106 186 34 1 1728 219 245 0 19 chr4 149874599 149874653 -5755467 - PB1D7 SINE Alu 0 120 68 1 1728 1133 68 0 7 chr4 149874662 149874809 -5755311 + B1_Mus1 SINE Alu 1 146 -2 1 1728 914 103 5 127 chr4 149875095 149875284 -5754836 - B2_Mm2 SINE B2 -14 181 16 1 1728 268 130 71 36 chr4 149875297 149875353 -5754767 - L1M2 LINE L1 -493 5798 5741 1 1728 917 272 5 5 chr4 149875385 149875592 -5754528 + B3 SINE B2 9 215 -1 1 1728 298 214 0 0 chr4 149876464 149876520 -5753600 - B3A SINE B2 -96 102 47 1 1728 235 211 0 0 chr4 149876567 149876605 -5753515 - B1F2 SINE Alu -99 50 13 1 1728 455 288 74 22 chr4 149876678 149876813 -5753307 - RSINE1 SINE B4 0 165 24 1 1728 21 0 0 0 chr4 149877091 149877112 -5753008 + AT_rich Low_complexity Low_complexity 1 21 0 1 1728 2612 74 3 0 chr4 149877147 149877473 -5752647 - ORR1A2 LTR MaLR 0 327 1 1 1728 281 138 103 0 chr4 149877780 149877838 -5752282 + RSINE1 SINE B4 45 108 -57 1 1728 309 300 8 104 chr4 149878014 149878148 -5751972 + B4A SINE B4 168 288 -4 1 1728 371 305 0 10 chr4 149878282 149878378 -5751742 - B3A SINE B2 -33 165 71 1 1728 258 139 0 0 chr4 149878630 149878673 -5751447 - B2_Mm2 SINE B2 -151 44 2 1 1728 227 261 14 14 chr4 149878896 149878966 -5751154 - B3A SINE B2 -128 70 1 1 1728 429 79 0 31 chr4 149879105 149879170 -5750950 + B1_Mur3 SINE Alu 1 63 -86 1 1728 1123 38 0 0 chr4 149879208 149879339 -5750781 + B1_Mm SINE Alu 1 131 -16 1 1728 723 81 0 0 chr4 149879765 149879864 -5750256 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1 1728 452 83 56 0 chr4 149879867 149879939 -5750181 - B2_Mm2 SINE B2 -9 186 111 1 1728 1382 53 29 87 chr4 149880028 149880191 -5749929 - B2_Mm2 SINE B2 0 195 32 1 1728 843 10 0 0 chr4 149880191 149880287 -5749833 + (TTTTC)n Simple_repeat Simple_repeat 2 97 0 1 1728 1158 70 0 0 chr4 149880287 149880430 -5749690 - B1_Mus2 SINE Alu -2 145 3 1 1728 1382 53 29 87 chr4 149880430 149880471 -5749649 - B2_Mm2 SINE B2 -164 31 3 1 1728 360 64 0 0 chr4 149881047 149881094 -5749026 + (CAGC)n Simple_repeat Simple_repeat 4 50 0 1 1728 1253 102 11 0 chr4 149881317 149881493 -5748627 + B2_Mm1t SINE B2 2 179 -14 1 1728 320 124 321 9 chr4 149881540 149881652 -5748468 + B2_Mm2 SINE B2 47 193 -2 1 1728 1238 48 0 0 chr4 149882235 149882381 -5747739 - B1_Mus1 SINE Alu -2 146 1 1 1728 423 284 66 66 chr4 149884392 149884573 -5745547 + B3A SINE B2 1 181 -17 1 1728 324 0 0 0 chr4 149884586 149884622 -5745498 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1728 542 218 42 14 chr4 149884887 149885031 -5745089 + B1_Mur3 SINE Alu 1 148 -1 1 1728 380 198 41 62 chr4 149885059 149885156 -5744964 - RSINE1 SINE B4 -19 146 52 1 1728 657 150 134 0 chr4 149885156 149885283 -5744837 + B1_Mur3 SINE Alu 2 145 -4 1 1728 252 0 0 0 chr4 149885306 149885334 -5744786 + (CCA)n Simple_repeat Simple_repeat 1 28 0 1 1728 1479 74 0 5 chr4 149885443 149885634 -5744486 - B2_Mm2 SINE B2 -4 191 2 1 1728 180 77 0 0 chr4 149885643 149885669 -5744451 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1728 319 125 0 0 chr4 149885852 149885908 -5744212 - ORR1B1 LTR MaLR -118 276 221 1 1728 663 48 0 0 chr4 149885908 149885991 -5744129 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1728 1162 56 43 6 chr4 149885994 149886156 -5743964 - B2_Mm2 SINE B2 -26 169 2 1 1728 980 148 137 5 chr4 149886159 149886356 -5743764 - ORR1B1 LTR MaLR -171 223 1 1 1728 627 164 0 41 chr4 149886356 149886476 -5743644 - B1_Mus2 SINE Alu -16 131 17 1 1728 605 169 128 23 chr4 149886742 149886875 -5743245 - B1_Mus1 SINE Alu -1 147 1 1 1728 420 271 9 36 chr4 149887645 149887756 -5742364 + RSINE1 SINE B4 3 110 -55 1 1728 760 145 0 12 chr4 149887792 149887953 -5742167 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 1728 360 0 0 0 chr4 149887992 149888032 -5742088 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1728 189 0 0 0 chr4 149888124 149888145 -5741975 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1728 585 0 0 0 chr4 149888338 149888403 -5741717 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1728 252 0 0 0 chr4 149888551 149888579 -5741541 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1728 243 0 0 0 chr4 149888714 149888741 -5741379 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1728 377 256 161 8 chr4 149889946 149890064 -5740056 + B3A SINE B2 1 136 -62 1 1728 183 100 0 0 chr4 149890502 149890532 -5739588 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1728 348 136 0 228 chr4 149890542 149890656 -5739464 - PB1D9 SINE Alu -32 88 1 1 1728 461 249 130 24 chr4 149890779 149890948 -5739172 - B3A SINE B2 -11 187 1 1 1728 396 0 0 0 chr4 149891027 149891071 -5739049 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1728 276 279 0 0 chr4 149891106 149891174 -5738946 + RSINE1 SINE B4 3 70 -95 1 1728 385 306 104 0 chr4 149891387 149891531 -5738589 - L1M4 LINE L1 -3756 2390 2232 1 1728 1869 164 24 51 chr4 149892656 149892715 -5737405 - ORR1A3 LTR MaLR 0 326 284 1 1728 1163 68 7 0 chr4 149892715 149892862 -5737258 - B1_Mus1 SINE Alu 0 148 1 1 1728 1869 164 24 51 chr4 149892862 149893137 -5736983 - ORR1A3 LTR MaLR -43 283 1 1 1728 1098 53 0 0 chr4 149893656 149893787 -5736333 + B1_Mus1 SINE Alu 2 132 -16 1 1728 1445 82 0 44 chr4 149893791 149893994 -5736126 + B2_Mm2 SINE B2 2 195 0 1 1728 288 167 0 12 chr4 149894482 149894538 -5735582 - ORR1C1 LTR MaLR -2 368 318 1 1728 29 47 0 0 chr4 149894549 149894592 -5735528 + AT_rich Low_complexity Low_complexity 1 43 0 1 1728 1684 37 0 0 chr4 149894856 149895047 -5735073 + B2_Mm1a SINE B2 2 192 -1 1 1728 4368 80 57 4 chr4 149895068 149896104 -5734016 - L1VL2 LINE L1 -2168 1447 338 1 1728 1348 55 48 27 chr4 149896104 149896292 -5733828 + B2_Mm2 SINE B2 4 195 0 1 1728 4368 84 119 5 chr4 149896292 149896307 -5733813 - L1VL2 LINE L1 -5998 337 324 1 1728 553 164 71 26 chr4 149896309 149896422 -5733698 + PB1D9 SINE Alu 3 120 0 1 1728 629 317 24 12 chr4 149896440 149896695 -5733425 - L1MB7 LINE L1 -76 6108 5851 1 1728 487 281 53 0 chr4 149896957 149897071 -5733049 - RSINE1 SINE B4 0 165 46 1 1728 608 121 22 0 chr4 149897215 149897306 -5732814 - B1_Mus2 SINE Alu 0 147 55 1 1728 829 144 7 29 chr4 149899370 149899506 -5730614 - B1_Mur4 SINE Alu 0 150 18 1 1728 559 212 0 17 chr4 149899519 149899634 -5730486 - PB1D9 SINE Alu -2 118 6 1 1728 1330 99 16 0 chr4 149899637 149899819 -5730301 - B2_Mm2 SINE B2 -7 188 4 1 1728 553 282 53 7 chr4 149900013 149900163 -5729957 + RSINE1 SINE B4 4 160 -5 1 1728 609 245 87 11 chr4 149901452 149901608 -5728512 + B3 SINE B2 1 163 -30 1 1728 521 165 252 0 chr4 149901660 149901775 -5728345 + B1_Mur4 SINE Alu 1 144 -6 1 1728 784 201 206 6 chr4 149901786 149901961 -5728159 + B3 SINE B2 1 210 -6 1 1728 1075 71 0 0 chr4 149902121 149902261 -5727859 + B1_Mm SINE Alu 8 147 0 1 1728 258 32 0 0 chr4 149902908 149902939 -5727181 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1728 350 244 0 44 chr4 149903162 149903252 -5726868 + B3A SINE B2 1 86 -112 1 1728 222 118 0 0 chr4 149903277 149903311 -5726809 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1728 1370 72 22 16 chr4 149903411 149903596 -5726524 - B2_Mm2 SINE B2 -8 187 2 1 1728 303 277 138 0 chr4 149904143 149904237 -5725883 + ID_B1 SINE B4 109 215 -9 1 1728 242 296 39 84 chr4 149904200 149904234 -5725886 - RLTR25B LTR ERVK -466 562 478 1 1728 514 167 61 20 chr4 149904234 149904332 -5725788 - B1_Mur2 SINE Alu -13 136 35 1 1728 242 296 39 84 chr4 149904332 149904355 -5725765 - RLTR25B LTR ERVK -466 477 415 1 1728 692 206 19 0 chr4 149904381 149904507 -5725613 - B1_Mur4 SINE Alu -6 144 12 1 1728 1194 68 0 0 chr4 149904535 149904683 -5725437 - B1_Mus1 SINE Alu 0 148 1 1 1728 428 220 230 6 chr4 149904739 149904913 -5725207 + Tigger7 DNA MER2_type 2278 2490 -1 1 1728 566 141 0 0 chr4 149904949 149905034 -5725086 - B1_Mus2 SINE Alu -6 141 57 1 1728 249 229 129 0 chr4 149905057 149905127 -5724993 - B3A SINE B2 -118 80 2 1 1728 223 156 0 0 chr4 149905138 149905170 -5724950 - B1_Mur4 SINE Alu -110 40 9 1 1728 505 301 99 26 chr4 149905256 149905447 -5724673 + B3A SINE B2 12 216 0 1 1728 280 200 0 103 chr4 149906092 149906170 -5723950 + PB1D9 SINE Alu 1 70 -50 1 1728 285 290 0 0 chr4 149906228 149906290 -5723830 - B4A SINE B4 -5 287 226 1 1728 1077 98 102 11 chr4 149906290 149906466 -5723654 - B2_Mm2 SINE B2 -3 192 1 1 1728 410 304 39 45 chr4 149906496 149906651 -5723469 - B3A SINE B2 -5 193 40 1 1728 735 137 17 25 chr4 149907617 149907737 -5722383 + PB1D9 SINE Alu 1 119 -1 1 1728 477 0 0 0 chr4 149907936 149907989 -5722131 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1728 1145 83 0 0 chr4 149908058 149908203 -5721917 - B1_Mus2 SINE Alu -1 146 2 1 1728 742 142 87 0 chr4 149908206 149908333 -5721787 - B1_Mus2 SINE Alu -1 146 9 1 1728 371 237 103 48 chr4 149908333 149908352 -5721768 - ID_B1 SINE B4 -1 223 70 1 1728 258 185 0 0 chr4 149908802 149908850 -5721270 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 1728 180 0 0 0 chr4 149908850 149908870 -5721250 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1728 363 319 102 46 chr4 149909193 149909390 -5720730 + B4A SINE B4 27 234 -58 1 1728 181 284 42 56 chr4 149909960 149910031 -5720089 - L2a LINE L2 -1 3425 3356 1 1728 1432 69 0 16 chr4 149910610 149910779 -5719341 + B2_Mm2 SINE B2 2 169 -26 1 1728 384 22 0 0 chr4 149910779 149910824 -5719296 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1728 1432 69 0 16 chr4 149910824 149910846 -5719274 + B2_Mm2 SINE B2 170 190 -5 1 1728 1157 103 18 0 chr4 149912048 149912213 -5717907 + URR1A DNA MER1_type 58 225 -1 1 1728 546 180 55 39 chr4 149912320 149912447 -5717673 - ID_B1 SINE B4 0 224 96 1 1728 262 191 248 37 chr4 149912517 149912626 -5717494 - B3A SINE B2 -65 133 2 1 1728 1412 80 32 0 chr4 149912661 149912849 -5717271 - B2_Mm2 SINE B2 0 195 2 1 1728 236 319 0 117 chr4 149913041 149913144 -5716976 + B4 SINE B4 65 155 -137 1 1728 346 185 82 61 chr4 149913085 149913183 -5716937 + PB1D9 SINE Alu 9 108 -12 1 1728 1741 121 107 4 chr4 149913400 149913681 -5716439 - MTC LTR MaLR -3 418 109 1 1728 1331 95 0 16 chr4 149913684 149913877 -5716243 + B2_Mm2 SINE B2 6 195 0 1 1728 234 0 0 0 chr4 149915298 149915324 -5714796 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1728 326 306 40 10 chr4 149915324 149915423 -5714697 - PB1D10 SINE Alu -9 108 7 1 1728 209 179 0 0 chr4 149915446 149915485 -5714635 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1728 391 217 0 124 chr4 149915537 149915674 -5714446 - PB1D9 SINE Alu 0 120 1 1 1728 484 284 47 7 chr4 149915693 149915842 -5714278 - B3A SINE B2 -19 179 25 1 1728 1378 105 5 0 chr4 149915842 149916033 -5714087 + B2_Mm1t SINE B2 1 192 -1 1 1728 199 143 40 20 chr4 149916033 149916083 -5714037 + GA-rich Low_complexity Low_complexity 1 51 0 1 1728 387 0 0 0 chr4 149916083 149916126 -5713994 + (TAG)n Simple_repeat Simple_repeat 2 44 0 1 1728 261 274 59 42 chr4 149916360 149916478 -5713642 - PB1D7 SINE Alu 0 120 1 1 1728 1408 88 0 15 chr4 149916539 149916735 -5713385 + B2_Mm2 SINE B2 1 193 -2 1 1728 1164 75 0 0 chr4 149917293 149917439 -5712681 + B1_Mus2 SINE Alu 2 147 0 1 1728 417 20 0 0 chr4 149917555 149917605 -5712515 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1728 1276 107 32 0 chr4 149918168 149918355 -5711765 + B2_Mm2 SINE B2 1 193 -2 1 1728 242 212 28 83 chr4 149918557 149918629 -5711491 - L2a LINE L2 -41 3385 3318 1 1728 201 370 28 9 chr4 149918734 149918843 -5711277 - L2a LINE L2 -272 3154 3044 1 1728 523 195 35 26 chr4 149919621 149919632 -5710488 - B1_Mur1 SINE Alu 0 149 140 1 1728 306 0 0 0 chr4 149919632 149919666 -5710454 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1728 523 195 35 26 chr4 149919666 149919770 -5710350 - B1_Mur1 SINE Alu -10 139 33 1 1728 4720 139 101 14 chr4 149919771 149920601 -5709519 - RMER19B LTR ERVK 0 902 1 1 1728 1359 73 45 0 chr4 149921173 149921352 -5708768 + B2_Mm2 SINE B2 1 187 -8 1 1728 376 290 56 42 chr4 149921583 149921727 -5708393 + B1F SINE Alu 2 147 -2 1 1728 361 291 0 64 chr4 149921733 149921843 -5708277 + RSINE1 SINE B4 2 104 -61 1 1728 397 182 104 0 chr4 149921923 149922000 -5708120 + B1F1 SINE Alu 1 85 -64 1 1728 232 109 0 111 chr4 149922050 149922101 -5708019 + T-rich Low_complexity Low_complexity 20 66 0 1 1728 1083 70 35 0 chr4 149922101 149922243 -5707877 - B1_Mus2 SINE Alu 0 147 1 1 1728 232 109 0 111 chr4 149922243 149922263 -5707857 + T-rich Low_complexity Low_complexity 3 19 0 1 1728 653 208 201 0 chr4 149922435 149922584 -5707536 + B3A SINE B2 1 179 -19 1 1728 210 244 0 0 chr4 149922948 149922989 -5707131 + polypyrimidine Low_complexity Low_complexity 4 44 0 1 1728 777 208 5 139 chr4 149922989 149923023 -5707097 - B2_Mm2 SINE B2 0 195 169 1 1728 649 111 265 0 chr4 149923023 149923140 -5706980 - B1_Mus1 SINE Alu 0 148 1 1 1728 777 208 5 139 chr4 149923140 149923328 -5706792 - B2_Mm2 SINE B2 -27 168 3 1 1728 313 200 0 18 chr4 149923396 149923452 -5706668 - B2_Mm2 SINE B2 -94 101 47 1 1728 1093 88 0 0 chr4 149923472 149923619 -5706501 - B2_Mm2 SINE B2 -47 148 2 1 1728 344 252 184 0 chr4 149925370 149925473 -5704647 - ID_B1 SINE B4 -4 220 99 1 1728 230 262 53 88 chr4 149925373 149925486 -5704634 - PB1D7 SINE Alu -7 113 5 1 1728 689 169 94 64 chr4 149925502 149925673 -5704447 - B2_Mm2 SINE B2 -19 176 1 1 1728 1213 41 7 0 chr4 149927343 149927489 -5702631 - B1_Mus2 SINE Alu 0 147 1 1 1728 211 200 58 39 chr4 149928102 149928154 -5701966 + B1F2 SINE Alu 3 55 -94 1 1728 217 154 55 55 chr4 149928261 149928316 -5701804 - PB1D10 SINE Alu -28 89 35 1 1728 678 226 62 36 chr4 149928504 149928697 -5701423 + B3 SINE B2 5 202 -14 1 1728 1161 42 7 27 chr4 149929013 149929161 -5700959 + B1_Mus2 SINE Alu 1 145 -2 1 1728 557 127 177 31 chr4 149929269 149929399 -5700721 + B1_Mur4 SINE Alu 1 149 -1 1 1728 246 222 0 0 chr4 149929469 149929514 -5700606 - Charlie2b DNA MER1_type -2667 115 71 1 1728 1176 75 0 0 chr4 149929792 149929938 -5700182 + B1_Mus2 SINE Alu 2 147 0 1 1728 713 238 39 10 chr4 149929966 149930170 -5699950 + B3 SINE B2 1 210 -6 1 1728 205 204 23 0 chr4 149931363 149931407 -5698713 + CT-rich Low_complexity Low_complexity 3 47 0 1 1728 1200 61 0 0 chr4 149931407 149931555 -5698565 - B1_Mus1 SINE Alu 0 148 1 1 1728 1629 31 0 20 chr4 149932507 149932703 -5697417 - B2_Mm1a SINE B2 0 193 2 1 1728 766 209 7 26 chr4 149932726 149932878 -5697242 - B1_Mur1 SINE Alu 0 149 1 1 1728 261 0 0 0 chr4 149933180 149933209 -5696911 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1728 181 183 16 16 chr4 149933211 149933272 -5696848 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1728 300 279 206 27 chr4 149933303 149933487 -5696633 - ID_B1 SINE B4 -7 217 1 1 1728 436 305 66 29 chr4 149934522 149934659 -5695461 - ID_B1 SINE B4 0 224 87 1 1728 1207 29 0 0 chr4 149934758 149934897 -5695223 + B1_Mus1 SINE Alu 1 139 -9 1 1728 427 133 322 17 chr4 149935147 149935262 -5694858 - B1_Mur4 SINE Alu 0 150 1 1 1728 373 185 0 15 chr4 149935293 149935359 -5694761 - ORR1D2 LTR MaLR -1 369 305 1 1728 281 240 214 8 chr4 149936277 149936403 -5693717 + B3 SINE B2 6 157 -59 1 1728 638 204 98 0 chr4 149936672 149936804 -5693316 - B1_Mm SINE Alu -1 146 2 1 1728 1034 234 48 57 chr4 149938502 149938855 -5691265 - RCHARR1 DNA MER1_type -59 915 507 1 1728 22 56 0 0 chr4 149938864 149938900 -5691220 + AT_rich Low_complexity Low_complexity 1 36 0 1 1728 299 128 20 15 chr4 149939084 149939146 -5690974 - B1_Mus2 SINE Alu 0 147 89 1 1728 790 218 28 88 chr4 149939348 149939564 -5690556 - B3 SINE B2 -13 203 1 1 1728 1123 50 28 0 chr4 149939579 149939720 -5690400 - B1_Mm SINE Alu 0 147 3 1 1728 206 157 0 73 chr4 149940571 149940626 -5689494 - L2 LINE L2 -955 2464 2414 1 1728 458 254 110 0 chr4 149940907 149941025 -5689095 - ID_B1 SINE B4 0 224 94 1 1728 284 354 0 0 chr4 149940957 149941036 -5689084 - PB1D10 SINE Alu -37 80 2 1 1728 1065 75 0 27 chr4 149941423 149941573 -5688547 - B1_Mus2 SINE Alu 0 147 2 1 1728 26 50 0 0 chr4 149943550 149943590 -5686530 + GC_rich Low_complexity Low_complexity 1 40 0 1 1728 34 84 0 0 chr4 149943609 149943692 -5686428 + GC_rich Low_complexity Low_complexity 1 83 0 1 1728 225 0 0 0 chr4 149944137 149944162 -5685958 + (CCCTG)n Simple_repeat Simple_repeat 4 28 0 1 1728 1195 42 0 27 chr4 149945631 149945767 -5684353 + B1_Mus1 SINE Alu 2 136 -12 1 1728 266 0 29 0 chr4 149945767 149945801 -5684319 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1728 302 323 20 10 chr4 149945913 149946013 -5684107 - L1M2 LINE L1 -2943 3200 3100 1 1729 531 292 73 6 chr4 149947205 149947344 -5682776 + B3A SINE B2 5 146 -52 1 1729 351 0 0 0 chr4 149947344 149947383 -5682737 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1729 531 292 73 6 chr4 149947383 149947422 -5682698 + B3A SINE B2 147 195 -3 1 1729 216 105 0 0 chr4 149947422 149947449 -5682671 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1729 1255 34 0 7 chr4 149947449 149947597 -5682523 - B1_Mus2 SINE Alu 0 147 1 1 1729 216 105 0 0 chr4 149947597 149947607 -5682513 + (T)n Simple_repeat Simple_repeat 1 10 0 1 1729 875 169 211 43 chr4 149947616 149947801 -5682319 - B3 SINE B2 0 216 1 1 1729 1010 185 44 21 chr4 149947801 149947989 -5682131 - B3 SINE B2 -7 209 34 1 1729 198 0 0 0 chr4 149948004 149948026 -5682094 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1729 596 33 3 50 chr4 149948026 149948120 -5682000 - B1_Mus2 SINE Alu -13 136 54 1 1729 198 0 0 0 chr4 149948139 149948161 -5681959 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1729 1099 39 0 23 chr4 149948174 149948307 -5681813 - B1_Mus1 SINE Alu -16 132 3 1 1729 216 0 0 0 chr4 149948359 149948383 -5681737 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1729 675 185 92 49 chr4 149948474 149948616 -5681504 - B1_Mur4 SINE Alu -2 148 1 1 1729 223 333 99 30 chr4 149948706 149948857 -5681263 + MIRb SINE MIR 65 224 -38 1 1729 230 250 36 0 chr4 149948912 149948968 -5681152 - ID4 SINE ID -11 72 15 1 1729 816 299 10 24 chr4 149951000 149951209 -5678911 - B3 SINE B2 0 216 11 1 1729 314 215 12 48 chr4 149951216 149951299 -5678821 - B1_Mur3 SINE Alu -2 147 68 1 1729 544 208 12 58 chr4 149951250 149951407 -5678713 - B3 SINE B2 -52 143 2 1 1729 1249 129 16 0 chr4 149951433 149951619 -5678501 - B2_Mm2 SINE B2 -6 189 1 1 1729 653 256 91 59 chr4 149951697 149951884 -5678236 + B3A SINE B2 2 194 -1 1 1729 281 229 0 20 chr4 149951927 149951976 -5678144 + B1_Mur4 SINE Alu 3 50 -100 1 1729 367 235 98 0 chr4 149952244 149952346 -5677774 - PB1D10 SINE Alu 0 117 6 1 1729 1293 96 11 0 chr4 149952652 149952829 -5677291 + B2_Mm1t SINE B2 2 180 -13 1 1729 318 121 409 11 chr4 149952861 149952954 -5677166 + B2_Mm2 SINE B2 48 177 -18 1 1729 1074 80 146 6 chr4 149952957 149953121 -5676999 - B2_Mm2 SINE B2 -8 187 1 1 1729 390 129 0 0 chr4 149953146 149953208 -5676912 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1729 232 352 14 27 chr4 149953212 149953285 -5676835 - RSINE1 SINE B4 -93 72 1 1 1729 291 271 167 9 chr4 149953587 149953695 -5676425 + ID_B1 SINE B4 13 137 -87 1 1729 779 198 24 0 chr4 149953735 149953901 -5676219 - B3 SINE B2 -11 187 6 1 1729 207 0 0 0 chr4 149954009 149954032 -5676088 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1729 252 38 75 19 chr4 149954053 149954106 -5676014 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 1 1729 1238 34 7 0 chr4 149954106 149954252 -5675868 - B1_Mus1 SINE Alu -1 147 1 1 1729 1079 60 0 0 chr4 149954295 149954428 -5675692 + B2_Mm2 SINE B2 1 133 -62 1 1729 318 233 0 40 chr4 149954445 149954521 -5675599 - B4 SINE B4 -218 74 2 1 1729 300 267 3 27 chr4 149954534 149954656 -5675464 - ID2 SINE ID -28 124 8 1 1729 23 33 0 0 chr4 149955054 149955084 -5675036 + AT_rich Low_complexity Low_complexity 1 30 0 1 1729 220 226 22 92 chr4 149955209 149955394 -5674726 + (CAGTG)n Simple_repeat Simple_repeat 5 176 0 1 1729 377 229 36 0 chr4 149955377 149955634 -5674486 + (CTGTG)n Simple_repeat Simple_repeat 1 266 0 1 1729 1235 116 5 16 chr4 149955716 149955908 -5674212 - B2_Mm2 SINE B2 -5 190 1 1 1729 577 57 7 6 chr4 149956737 149956817 -5673303 + B1_Mus2 SINE Alu 40 147 0 1 1729 216 97 0 0 chr4 149956817 149956848 -5673272 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1729 301 287 71 36 chr4 149957934 149958046 -5672074 - PB1D10 SINE Alu -1 116 1 1 1729 508 142 225 45 chr4 149958959 149959070 -5671050 - B1_Mm SINE Alu 0 147 17 1 1729 500 340 65 31 chr4 149959602 149959863 -5670257 - B4A SINE B4 -12 280 11 1 1729 282 286 52 0 chr4 149959929 149960006 -5670114 - ID_B1 SINE B4 -2 222 142 1 1729 223 328 94 23 chr4 149960006 149960057 -5670063 - B1_Mur1 SINE Alu -2 147 11 1 1729 765 156 15 23 chr4 149960059 149960190 -5669930 - B1_Mur3 SINE Alu -11 138 9 1 1729 783 238 232 25 chr4 149960199 149960475 -5669645 - MTE2b LTR MaLR -41 338 6 1 1729 288 301 7 104 chr4 149961282 149961390 -5668730 - B1_Mus1 SINE Alu -9 111 8 1 1729 331 233 19 151 chr4 149961341 149961447 -5668673 - ID_B1 SINE B4 -88 136 45 1 1729 334 237 26 0 chr4 149961684 149961760 -5668360 + ID4 SINE ID 5 82 -1 1 1729 1406 49 38 5 chr4 149962718 149962743 -5667377 - B2_Mm1t SINE B2 -3 190 160 1 1729 231 36 0 0 chr4 149962743 149962771 -5667349 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1729 1406 49 38 5 chr4 149962771 149962929 -5667191 - B2_Mm1t SINE B2 -34 159 1 1 1729 1115 106 35 6 chr4 149962932 149963103 -5667017 - B2_Mm2 SINE B2 -9 186 11 1 1729 261 263 52 13 chr4 149963034 149963111 -5667009 - ID4_ SINE ID -3 80 1 1 1729 650 276 11 60 chr4 149963130 149963315 -5666805 - B3A SINE B2 -22 176 1 1 1729 260 280 0 51 chr4 149963450 149963529 -5666591 - PB1D9 SINE Alu -1 119 45 1 1729 708 161 94 25 chr4 149963766 149963925 -5666195 + B2_Mm2 SINE B2 26 195 0 1 1729 195 42 0 0 chr4 149963925 149963949 -5666171 + (GGA)n Simple_repeat Simple_repeat 2 25 0 1 1729 417 39 0 0 chr4 149963950 149964001 -5666119 + (TAG)n Simple_repeat Simple_repeat 2 52 0 1 1729 414 0 0 0 chr4 149964263 149964309 -5665811 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1729 243 0 0 0 chr4 149964309 149964335 -5665785 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1729 646 167 378 0 chr4 149964811 149964967 -5665153 - B3 SINE B2 0 216 2 1 1729 665 292 99 102 chr4 149964994 149965326 -5664794 - MER21B LTR ERV1 -516 347 17 1 1729 317 229 142 35 chr4 149965899 149966012 -5664108 + B1F SINE Alu 22 146 -3 1 1729 279 0 0 0 chr4 149966439 149966470 -5663650 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1729 418 328 8 8 chr4 149966509 149966635 -5663485 - PB1 SINE Alu -1 126 1 1 1729 660 235 63 38 chr4 149966667 149966826 -5663294 - B3 SINE B2 0 216 54 1 1729 846 254 67 43 chr4 149967366 149967576 -5662544 - B3 SINE B2 0 216 2 1 1729 305 226 32 0 chr4 149967692 149967754 -5662366 + tRNA-Ala-GCA tRNA tRNA 4 67 -8 1 1729 247 49 63 32 chr4 149968207 149968270 -5661850 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 1 1729 229 344 111 0 chr4 149968382 149968472 -5661648 - ID_B1 SINE B4 -30 194 95 1 1729 1013 165 147 20 chr4 149968561 149968759 -5661361 - URR1B DNA MER1_type 0 225 3 1 1729 1061 79 0 0 chr4 149968844 149968983 -5661137 + B1_Mm SINE Alu 9 147 0 1 1729 216 67 0 0 chr4 149968998 149969028 -5661092 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1729 441 0 0 0 chr4 149969210 149969259 -5660861 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1729 468 187 0 0 chr4 149969490 149969565 -5660555 - B1_Mur2 SINE Alu -5 144 70 1 1729 604 208 58 0 chr4 149970574 149970694 -5659426 + B3 SINE B2 2 128 -88 1 1729 257 0 30 0 chr4 149970914 149970947 -5659173 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1729 330 261 207 16 chr4 149970947 149971068 -5659052 - ID_B1 SINE B4 0 224 81 1 1729 479 271 120 11 chr4 149971562 149971745 -5658375 - B3 SINE B2 -12 204 2 1 1729 269 305 80 56 chr4 149972708 149972833 -5657287 - B1F1 SINE Alu -17 132 5 1 1729 360 296 51 0 chr4 149972747 149972845 -5657275 - ID_B1 SINE B4 -48 176 74 1 1729 1567 36 0 35 chr4 149973098 149973298 -5656822 + B2_Mm1a SINE B2 1 193 0 1 1729 1195 148 60 18 chr4 149973852 149974212 -5655908 + RMER10B LTR ERVL 1 398 0 1 1729 375 248 94 88 chr4 149974278 149974437 -5655683 - MLT1B LTR MaLR -18 372 213 1 1729 431 173 13 0 chr4 149974472 149974547 -5655573 + B1_Mm SINE Alu 16 91 -56 1 1729 245 193 20 178 chr4 149974473 149974560 -5655560 + MT2B2 LTR ERVL 181 249 -335 1 1729 1542 62 0 5 chr4 149974560 149974753 -5655367 + B2_Mm2 SINE B2 3 194 -1 1 1729 245 193 20 178 chr4 149974753 149974766 -5655354 + MT2B2 LTR ERVL 250 264 -320 1 1729 397 223 55 55 chr4 149974771 149974899 -5655221 - MLT1B LTR MaLR -258 132 5 1 1729 344 300 0 14 chr4 149975095 149975237 -5654883 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 1729 239 95 48 0 chr4 149975320 149975362 -5654758 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1 1729 353 243 120 9 chr4 149976513 149976621 -5653499 - B1_Mus1 SINE Alu -16 132 13 1 1729 273 282 60 60 chr4 149976669 149976752 -5653368 - RSINE1 SINE B4 -28 137 55 1 1729 385 252 12 2 chr4 149977344 149977447 -5652673 - B1_Mus2 SINE Alu -69 78 2 1 1729 26 0 0 0 chr4 149978478 149978504 -5651616 + AT_rich Low_complexity Low_complexity 1 26 0 1 1729 595 216 27 0 chr4 149978512 149978623 -5651497 + B1_Mur1 SINE Alu 2 115 -34 1 1729 241 316 37 84 chr4 149978993 149979100 -5651020 - RMER4B LTR ERVK -137 448 347 1 1729 658 196 37 19 chr4 149979138 149979299 -5650821 - RodERV21-int LTR ERV1 -198 4793 4630 1 1729 180 0 0 0 chr4 149979459 149979479 -5650641 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1729 395 231 88 0 chr4 149979680 149979771 -5650349 + PB1D9 SINE Alu 17 115 -5 1 1729 207 0 0 0 chr4 149980028 149980051 -5650069 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 1 1729 292 270 24 37 chr4 149981350 149981567 -5648553 - L1ME1 LINE L1 -304 6140 5926 1 1729 533 187 141 33 chr4 149981680 149981830 -5648290 + B3A SINE B2 1 168 -30 1 1729 197 300 31 77 chr4 149982192 149982322 -5647798 + MIRb SINE MIR 18 141 -127 1 1729 581 173 362 25 chr4 149982345 149982505 -5647615 - B3 SINE B2 -2 214 1 1 1729 270 233 0 32 chr4 149982565 149982627 -5647493 + 4.5SRNA scRNA scRNA 27 86 -8 1 1729 669 138 9 27 chr4 149982576 149982688 -5647432 + B1_Mur3 SINE Alu 40 149 0 1 1729 954 108 14 0 chr4 149982734 149982873 -5647247 + B2_Mm2 SINE B2 1 141 -54 1 1729 432 299 0 0 chr4 149983515 149983622 -5646498 + PB1D10 SINE Alu 4 110 -7 1 1729 908 248 8 71 chr4 149983643 149983882 -5646238 + B4 SINE B4 33 256 -36 1 1729 24 0 0 0 chr4 149984164 149984188 -5645932 + AT_rich Low_complexity Low_complexity 1 24 0 1 1729 845 46 0 9 chr4 149984245 149984354 -5645766 - B1_Mus2 SINE Alu 0 147 40 1 1729 1560 21 26 16 chr4 149985296 149985488 -5644632 - B2_Mm2 SINE B2 0 195 2 1 1729 333 0 0 0 chr4 149986870 149986907 -5643213 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1729 462 239 23 0 chr4 149987138 149987226 -5642894 + B1F SINE Alu 3 92 -57 1 1729 781 142 0 0 chr4 149987232 149987345 -5642775 + B1_Mus2 SINE Alu 22 134 -13 1 1729 234 328 16 23 chr4 149990134 149990262 -5639858 + GA-rich Low_complexity Low_complexity 5 131 0 1 1729 24 32 0 0 chr4 149994024 149994055 -5636065 + AT_rich Low_complexity Low_complexity 1 31 0 1 1729 23 33 0 0 chr4 149994229 149994259 -5635861 + AT_rich Low_complexity Low_complexity 1 30 0 1 1729 342 0 0 0 chr4 149996382 149996420 -5633700 + (CCTG)n Simple_repeat Simple_repeat 3 40 0 1 1729 791 200 21 131 chr4 149996477 149996585 -5633535 + URR1A DNA MER1_type 17 121 -105 1 1729 1479 43 11 16 chr4 149996585 149996772 -5633348 + B2_Mm1a SINE B2 1 186 -7 1 1729 791 200 21 131 chr4 149996772 149996899 -5633221 + URR1A DNA MER1_type 122 226 0 1 1729 252 243 14 0 chr4 149997433 149997507 -5632613 + L1M1 LINE L1 5783 5857 -446 1 1729 1226 68 0 12 chr4 149997691 149997856 -5632264 + B2_Mm2 SINE B2 2 164 -31 1 1729 419 270 18 95 chr4 149999378 149999546 -5630574 - B4 SINE B4 -136 156 2 1 1729 192 111 0 0 chr4 150000848 150000884 -5629236 + (CAGAG)n Simple_repeat Simple_repeat 1 36 0 1 1729 619 265 74 0 chr4 150001029 150001191 -5628929 + B4A SINE B4 1 174 -118 2 1729 1132 76 0 14 chr4 150002231 150002378 -5627742 - B1_Mus2 SINE Alu -2 145 1 3 1729 253 310 81 47 chr4 150002808 150002957 -5627163 - ORR1E LTR MaLR -167 192 39 4 1729 727 116 40 17 chr4 150002971 150003147 -5626973 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 5 1729 315 253 67 0 chr4 150004171 150004246 -5625874 - ID_B1 SINE B4 -7 217 138 6 1729 236 260 99 49 chr4 150004275 150004356 -5625764 + B1F1 SINE Alu 10 94 -55 7 1729 278 254 89 106 chr4 150004442 150004565 -5625555 + RSINE1 SINE B4 4 124 -41 8 1729 351 0 0 0 chr4 150004566 150004605 -5625515 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1729 252 0 0 0 chr4 150004683 150004711 -5625409 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 1 1729 226 240 37 85 chr4 150005588 150005670 -5624450 - ID4_ SINE ID -3 80 3 1 1729 384 129 39 19 chr4 150005864 150005967 -5624153 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1729 311 237 0 0 chr4 150006012 150006071 -5624049 - RSINE1 SINE B4 -22 143 85 1 1729 237 65 0 0 chr4 150006071 150006102 -5624018 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1729 1184 61 0 39 chr4 150006102 150006255 -5623865 - B1_Mm SINE Alu 0 147 1 1 1729 363 308 33 0 chr4 150006256 150006347 -5623773 - RSINE1 SINE B4 -61 104 11 1 1729 1468 75 16 0 chr4 150006364 150006551 -5623569 - B2_Mm2 SINE B2 -1 194 5 1 1729 396 0 0 0 chr4 150007109 150007153 -5622967 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1729 355 236 11 22 chr4 150007697 150007788 -5622332 + PB1D10 SINE Alu 6 95 -22 1 1729 203 32 65 0 chr4 150007883 150007914 -5622206 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 1 1729 546 136 62 26 chr4 150007914 150008027 -5622093 - B2_Mm2 SINE B2 0 195 79 2 1729 379 271 87 39 chr4 150008023 150008085 -5622035 - B4A SINE B4 -159 133 65 2 1729 207 0 0 0 chr4 150008085 150008108 -5622012 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1729 379 271 87 39 chr4 150008108 150008172 -5621948 - B4A SINE B4 -228 64 1 2 1729 682 228 165 21 chr4 150008188 150008376 -5621744 - ID_B1 SINE B4 -8 216 2 2 1729 193 57 0 54 chr4 150009216 150009253 -5620867 + (TATG)n Simple_repeat Simple_repeat 3 37 0 2 1729 351 121 0 0 chr4 150009254 150009312 -5620808 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1729 906 258 69 4 chr4 150009360 150009621 -5620499 + B4 SINE B4 9 286 -6 2 1729 225 94 0 0 chr4 150009996 150010028 -5620092 + (GGA)n Simple_repeat Simple_repeat 1 32 0 2 1729 501 17 0 0 chr4 150010382 150010440 -5619680 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2 1729 702 201 0 44 chr4 150010473 150010608 -5619512 - B3 SINE B2 -86 130 2 2 1729 522 0 0 0 chr4 150011129 150011187 -5618933 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1729 275 284 13 13 chr4 150011245 150011320 -5618800 - B4 SINE B4 -3 289 215 3 1729 513 272 131 65 chr4 150011706 150011966 -5618154 + RMER20B LTR ERVK 90 366 -261 3 1729 186 43 0 0 chr4 150012038 150012061 -5618059 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1729 594 128 0 0 chr4 150013202 150013296 -5616824 + (TCC)n Simple_repeat Simple_repeat 2 95 0 3 1729 1221 35 0 0 chr4 150013297 150013439 -5616681 - B1_Mus1 SINE Alu -5 143 2 3 1729 232 317 20 72 chr4 150013704 150013745 -5616375 - ID_B1 SINE B4 -2 222 82 3 1729 438 200 0 74 chr4 150013745 150013853 -5616267 - B1_Mur3 SINE Alu -49 100 1 3 1729 794 164 174 37 chr4 150013867 150014057 -5616063 - B3 SINE B2 0 216 1 3 1729 186 209 0 0 chr4 150014197 150014240 -5615880 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1729 598 243 125 0 chr4 150014258 150014394 -5615726 - RSINE1 SINE B4 -11 154 2 4 1729 339 222 64 9 chr4 150014394 150014503 -5615617 - B1_Mur2 SINE Alu -5 144 30 4 1729 237 250 31 0 chr4 150014555 150014619 -5615501 - ID2 SINE ID -16 67 2 4 1729 213 39 0 0 chr4 150014980 150015006 -5615114 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1729 1182 81 0 0 chr4 150015029 150015177 -5614943 + B1_Mus1 SINE Alu 1 148 0 4 1729 22 0 0 0 chr4 150015182 150015204 -5614916 + AT_rich Low_complexity Low_complexity 1 22 0 4 1729 897 177 0 0 chr4 150015426 150015815 -5614305 + (TG)n Simple_repeat Simple_repeat 1 389 0 4 1729 456 253 111 58 chr4 150015818 150015990 -5614130 - B3A SINE B2 -16 182 2 4 1729 608 245 56 21 chr4 150016026 150016168 -5613952 - B1_Mur1 SINE Alu -2 147 1 4 1729 527 250 73 0 chr4 150016195 150016319 -5613801 - ID_B1 SINE B4 -91 133 1 4 1729 268 189 0 36 chr4 150016360 150016415 -5613705 - RSINE1 SINE B4 -26 139 87 5 1729 1130 71 0 6 chr4 150016886 150017042 -5613078 + B2_Mm2 SINE B2 2 156 -39 5 1729 666 95 0 0 chr4 150017262 150017357 -5612763 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 5 1729 1521 43 0 0 chr4 150019041 150019319 -5610801 + (CTGTG)n Simple_repeat Simple_repeat 1 278 0 5 1729 611 300 20 0 chr4 150019416 150019589 -5610531 + Lx6 LINE L1 6164 6367 -683 5 1729 1473 277 86 12 chr4 150019585 150020120 -5610000 + Lx6 LINE L1 6483 7433 -27 5 1729 244 192 0 55 chr4 150020133 150020188 -5609932 + PB1D9 SINE Alu 3 54 -66 5 1729 213 151 0 0 chr4 150020222 150020275 -5609845 + GA-rich Low_complexity Low_complexity 4 56 0 5 1729 247 227 110 25 chr4 150020277 150020375 -5609745 + B1_Mur3 SINE Alu 42 141 -6 5 1729 1316 18 0 23 chr4 150020414 150020589 -5609531 + (GGAA)n Simple_repeat Simple_repeat 4 174 0 5 1729 248 235 103 0 chr4 150020596 150020664 -5609456 + ID4 SINE ID 5 79 -4 5 1729 466 153 56 0 chr4 150021458 150021602 -5608518 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 6 1729 866 163 0 11 chr4 150021651 150021831 -5608289 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 6 1729 812 191 6 0 chr4 150021865 150022043 -5608077 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 6 1729 364 165 22 0 chr4 150022060 150022151 -5607969 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 6 1729 236 208 69 0 chr4 150022181 150022253 -5607867 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 6 1729 562 298 38 0 chr4 150022736 150022894 -5607226 + RSINE1 SINE B4 2 165 0 6 1729 1033 90 13 27 chr4 150023224 150023373 -5606747 + B1_Mus2 SINE Alu 1 147 0 6 1729 1327 157 42 0 chr4 150023634 150023850 -5606270 - URR1B DNA MER1_type 0 225 1 6 1729 331 155 24 0 chr4 150023926 150024010 -5606110 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 6 1729 251 316 8 0 chr4 150024203 150024336 -5605784 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 1729 747 262 12 0 chr4 150024338 150024498 -5605622 - RSINE1 SINE B4 -2 163 2 6 1729 732 219 15 7 chr4 150024534 150024686 -5605434 + B3A SINE B2 2 165 -28 6 1729 441 0 0 0 chr4 150024686 150024735 -5605385 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1729 317 337 83 33 chr4 150024735 150024763 -5605357 + B2_Mm1a SINE B2 166 191 -2 6 1729 1192 81 0 0 chr4 150024773 150024921 -5605199 + B1_Mus1 SINE Alu 1 148 0 6 1729 475 299 28 76 chr4 150024993 150025210 -5604910 - B4A SINE B4 -75 217 3 7 1729 180 111 0 0 chr4 150025326 150025353 -5604767 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 7 1729 27 0 0 0 chr4 150026207 150026234 -5603886 + GC_rich Low_complexity Low_complexity 1 27 0 7 1729 508 243 19 39 chr4 150026837 150026991 -5603129 + RSINE1 SINE B4 2 152 -13 7 1729 686 251 152 9 chr4 150027263 150027541 -5602579 - MTEa LTR MaLR -18 361 57 7 1729 227 296 151 8 chr4 150027443 150027569 -5602551 - MT2A LTR ERVL -386 147 4 7 1729 282 188 0 50 chr4 150027650 150027829 -5602291 + (CTGGGG)n Simple_repeat Simple_repeat 4 173 0 7 1729 221 289 107 47 chr4 150027858 150028007 -5602113 - L2a LINE L2 -282 3144 2987 7 1729 436 161 49 6 chr4 150028279 150028441 -5601679 + CT-rich Low_complexity Low_complexity 2 170 0 7 1729 219 88 0 0 chr4 150028563 150028597 -5601523 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1729 1004 243 80 20 chr4 150028886 150029188 -5600932 - MTD LTR MaLR 0 419 100 8 1729 950 217 20 20 chr4 150029251 150029453 -5600667 - ID_B1 SINE B4 -9 215 14 8 1729 308 299 19 9 chr4 150029643 150029751 -5600369 + LTR81B LTR ERV1? 128 236 -1157 8 1729 31 0 0 0 chr4 150030367 150030398 -5599722 + AT_rich Low_complexity Low_complexity 1 31 0 8 1729 225 0 0 0 chr4 150030486 150030511 -5599609 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 8 1729 867 256 5 33 chr4 150030526 150030736 -5599384 - B3 SINE B2 -4 212 9 8 1729 689 249 10 60 chr4 150030747 150030948 -5599172 - B3A SINE B2 0 198 8 8 1729 509 281 52 0 chr4 150031487 150031622 -5598498 + RSINE1 SINE B4 3 144 -21 8 1729 1222 81 90 34 chr4 150031717 150031895 -5598225 + B2_Mm2 SINE B2 2 189 -6 8 1729 568 193 183 9 chr4 150031912 150032027 -5598093 - B1_Mur1 SINE Alu -13 136 2 8 1729 587 278 55 35 chr4 150033027 150033228 -5596892 + B4A SINE B4 27 231 -61 9 1729 3842 35 5 0 chr4 150033417 150033851 -5596269 - RLTR10C LTR ERVK 0 436 1 9 1729 210 304 11 56 chr4 150033856 150034034 -5596086 + C-rich Low_complexity Low_complexity 4 173 0 9 1729 319 208 0 49 chr4 150034413 150034494 -5595626 - MLT1A1 LTR MaLR -13 395 319 9 1729 329 219 10 61 chr4 150035229 150035529 -5594591 + (TG)n Simple_repeat Simple_repeat 1 284 0 9 1729 255 228 0 0 chr4 150036328 150036385 -5593735 + CT-rich Low_complexity Low_complexity 1 57 0 9 1729 333 0 0 0 chr4 150036800 150036837 -5593283 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1729 458 230 100 17 chr4 150037257 150037431 -5592689 + B4A SINE B4 24 230 -62 9 1729 675 198 180 6 chr4 150037432 150037615 -5592505 + B3 SINE B2 1 215 -1 9 1729 234 0 0 0 chr4 150037626 150037652 -5592468 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1729 1275 59 0 6 chr4 150037877 150038047 -5592073 + B2_Mm2 SINE B2 1 169 -26 1 1729 532 278 70 32 chr4 150038186 150038342 -5591778 - B3A SINE B2 -36 162 1 1 1729 22 0 0 0 chr4 150038686 150038708 -5591412 + GC_rich Low_complexity Low_complexity 1 22 0 1 1729 289 207 12 12 chr4 150038720 150038803 -5591317 + CT-rich Low_complexity Low_complexity 1 83 0 1 1729 368 40 20 0 chr4 150038842 150038892 -5591228 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1729 485 227 52 52 chr4 150038931 150039066 -5591054 - B3A SINE B2 -28 170 36 1 1729 290 264 117 32 chr4 150040383 150040477 -5589643 + PB1D10 SINE Alu 1 102 -15 1 1729 243 266 12 25 chr4 150040481 150040562 -5589558 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 1 1729 501 306 91 0 chr4 150040892 150041091 -5589029 - ID_B1 SINE B4 -6 218 2 1 1729 762 221 123 5 chr4 150041122 150041158 -5588962 - B3 SINE B2 -6 210 165 1 1729 318 50 0 0 chr4 150041158 150041198 -5588922 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1729 762 221 123 5 chr4 150041198 150041348 -5588772 - B3 SINE B2 -52 164 2 1 1729 2305 114 68 8 chr4 150041443 150041823 -5588297 + MTC LTR MaLR 5 407 -14 1 1729 226 173 0 6 chr4 150041851 150041901 -5588219 + B1_Mur4 SINE Alu 62 140 -10 1 1729 207 0 0 0 chr4 150041901 150041924 -5588196 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1729 242 315 0 0 chr4 150042123 150042177 -5587943 + B4 SINE B4 1 54 -238 1 1729 642 184 54 31 chr4 150042355 150042484 -5587636 + B1_Mur1 SINE Alu 13 144 -5 1 1729 871 144 8 0 chr4 150043111 150043243 -5586877 + B1_Mus2 SINE Alu 2 134 -13 1 1729 213 154 0 0 chr4 150043335 150043374 -5586746 + CT-rich Low_complexity Low_complexity 2 40 0 1 1729 489 225 97 127 chr4 150043383 150043683 -5586437 + B4A SINE B4 2 292 0 1 1729 215 262 88 0 chr4 150043731 150043811 -5586309 + PB1D7 SINE Alu 2 88 -32 1 1729 247 308 0 0 chr4 150043824 150043889 -5586231 - Tigger5 DNA MER2_type -2304 102 38 1 1729 297 0 0 0 chr4 150043996 150044029 -5586091 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1729 575 254 22 15 chr4 150044093 150044229 -5585891 - RSINE1 SINE B4 -26 139 3 1 1729 313 192 82 0 chr4 150044311 150044384 -5585736 - B1_Mur2 SINE Alu -27 122 44 1 1729 645 299 25 20 chr4 150044403 150044604 -5585516 - B3 SINE B2 -4 212 11 1 1729 212 0 0 35 chr4 150044917 150044946 -5585174 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1729 223 314 6 56 chr4 150046328 150046507 -5583613 + C-rich Low_complexity Low_complexity 4 173 0 1 1729 745 232 63 5 chr4 150046609 150046800 -5583320 + ID_B1 SINE B4 11 212 -12 1 1729 440 18 0 17 chr4 150046806 150046864 -5583256 + (CAAG)n Simple_repeat Simple_repeat 2 58 0 1 1729 242 370 59 38 chr4 150047381 150047620 -5582500 + MLT1J LTR MaLR 37 280 -232 1 1729 365 276 44 15 chr4 150047687 150047823 -5582297 - B4A SINE B4 -151 141 2 1 1729 868 153 41 20 chr4 150048137 150048284 -5581836 + B1_Mur4 SINE Alu 1 150 0 1 1729 780 255 92 15 chr4 150048318 150048513 -5581607 - B3 SINE B2 -5 211 2 1 1729 233 239 26 90 chr4 150048666 150048744 -5581376 + MTEb LTR MaLR 289 361 -18 1 1729 248 154 19 0 chr4 150049042 150049094 -5581026 + CT-rich Low_complexity Low_complexity 2 54 0 1 1729 330 130 101 7 chr4 150049094 150049233 -5580887 + (TA)n Simple_repeat Simple_repeat 2 153 0 1 1729 660 243 0 73 chr4 150049598 150049762 -5580358 - RSINE1 SINE B4 -11 154 3 1 1729 383 235 44 148 chr4 150050563 150050698 -5579422 - B4 SINE B4 0 292 172 1 1729 908 148 28 7 chr4 150050759 150050902 -5579218 - B1_Mur1 SINE Alu -1 148 3 1 1729 191 125 0 24 chr4 150051968 150052009 -5578111 + (AGGGGG)n Simple_repeat Simple_repeat 2 41 0 1 1729 1756 137 54 31 chr4 150052066 150052444 -5577676 + RMER10A LTR ERVL 35 423 -19 1 1729 267 31 0 0 chr4 150052444 150052476 -5577644 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1729 1756 137 54 31 chr4 150052476 150052488 -5577632 + RMER10A LTR ERVL 424 434 -8 1 1729 291 253 73 10 chr4 150052502 150052598 -5577522 - RSINE1 SINE B4 -63 102 1 1 1729 417 196 117 10 chr4 150052626 150052729 -5577391 - B1F1 SINE Alu -1 148 35 1 1729 471 260 7 66 chr4 150052771 150052907 -5577213 - RSINE1 SINE B4 -36 129 2 1 1729 246 273 0 0 chr4 150052985 150053051 -5577069 - LTR31 LTR ERV1 -259 360 295 1 1729 281 376 104 6 chr4 150053121 150053303 -5576817 - LTR31 LTR ERV1 -275 344 145 1 1729 2440 130 84 13 chr4 150053453 150053844 -5576276 + MTC LTR MaLR 1 419 -2 1 1729 1579 38 0 21 chr4 150053862 150054051 -5576069 - B2_Mm1t SINE B2 -6 187 3 1 1729 885 129 7 7 chr4 150054051 150054191 -5575929 + B1_Mur4 SINE Alu 11 150 0 1 1729 2327 179 167 51 chr4 150054223 150054798 -5575322 - RLTR26 LTR ERVK 0 642 1 1 1729 2146 156 60 25 chr4 150054809 150055243 -5574877 + MTC-int LTR MaLR 2 450 -808 1 1729 1726 189 69 29 chr4 150055243 150055662 -5574458 + MTC-int LTR MaLR 821 1256 -2 1 1729 2653 140 34 19 chr4 150055664 150056079 -5574041 + MTC LTR MaLR 1 421 0 1 1729 272 294 45 32 chr4 150056193 150056350 -5573770 - MIR3 SINE MIR -23 185 33 1 1729 474 18 0 0 chr4 150056620 150056675 -5573445 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1729 229 241 157 0 chr4 150056774 150056857 -5573263 - PB1D10 SINE Alu 0 117 22 1 1729 280 295 173 0 chr4 150056926 150057065 -5573055 + RSINE1 SINE B4 3 165 0 1 1729 303 49 0 0 chr4 150057111 150057152 -5572968 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1729 225 0 0 0 chr4 150057152 150057176 -5572944 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1729 1911 174 92 26 chr4 150057575 150058000 -5572120 - RMER4A LTR ERVK -8 458 6 1 1729 606 122 0 0 chr4 150058373 150058471 -5571649 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 1 1729 1194 41 0 0 chr4 150058471 150058617 -5571503 - B1_Mus1 SINE Alu 0 148 3 1 1729 613 236 98 57 chr4 150060200 150060393 -5569727 + ID_B1 SINE B4 2 202 -22 1 1729 540 30 0 0 chr4 150060420 150060486 -5569634 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1729 458 291 48 78 chr4 150061022 150061106 -5569014 + ID_B1 SINE B4 1 224 0 1 1729 563 221 41 48 chr4 150061106 150061253 -5568867 + B1F2 SINE Alu 4 149 0 1 1729 330 314 0 0 chr4 150062510 150062596 -5567524 - L1MB8 LINE L1 -2 6176 6091 1 1729 1145 196 29 0 chr4 150062602 150062811 -5567309 - B3 SINE B2 -1 215 1 1 1729 30 0 0 0 chr4 150062818 150062848 -5567272 + AT_rich Low_complexity Low_complexity 1 30 0 1 1729 517 234 69 49 chr4 150062852 150062883 -5567237 - RSINE1 SINE B4 -4 161 129 1 1729 402 21 0 0 chr4 150062883 150062930 -5567190 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1729 222 37 0 0 chr4 150062930 150062956 -5567164 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1729 517 234 69 49 chr4 150062956 150063067 -5567053 - RSINE1 SINE B4 -37 128 16 1 1729 833 152 14 0 chr4 150063527 150063672 -5566448 + URR1A DNA MER1_type 78 224 -2 1 1729 368 309 71 39 chr4 150064158 150064313 -5565807 - B4 SINE B4 0 292 133 1 1729 250 336 35 9 chr4 150064688 150064802 -5565318 + MLT1A1 LTR MaLR 291 407 -1 1 1729 258 156 356 0 chr4 150066133 150066239 -5563881 - B2_Mm1t SINE B2 0 193 64 1 1729 1107 109 46 0 chr4 150066293 150066467 -5563653 - B2_Mm2 SINE B2 -13 182 1 1 1729 1062 231 5 0 chr4 150066503 150066711 -5563409 - B3 SINE B2 -7 209 1 1 1729 424 272 38 46 chr4 150066846 150066977 -5563143 + RSINE1 SINE B4 3 132 -33 1 1729 26 30 0 0 chr4 150067425 150067458 -5562662 + AT_rich Low_complexity Low_complexity 1 33 0 1 1729 204 125 0 0 chr4 150067464 150067496 -5562624 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1729 577 284 15 15 chr4 150067509 150067645 -5562475 - RSINE1 SINE B4 -13 152 17 1 1729 359 206 0 0 chr4 150067655 150067723 -5562397 - RMER4B LTR ERVK -186 399 332 1 1729 315 0 0 0 chr4 150067727 150067762 -5562358 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1729 896 160 111 0 chr4 150067762 150067943 -5562177 - RMER4B LTR ERVK -363 222 22 1 1729 1165 41 0 0 chr4 150067943 150068081 -5562039 + B1_Mus2 SINE Alu 1 138 -9 1 1729 270 0 0 0 chr4 150068081 150068111 -5562009 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1729 823 164 92 122 chr4 150068117 150068164 -5561956 - RMER4B LTR ERVK -434 32 1 1 1729 632 77 0 11 chr4 150068166 150068258 -5561862 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 1 1729 403 220 3 52 chr4 150068323 150068639 -5561481 + CT-rich Low_complexity Low_complexity 1 300 0 1 1729 691 183 218 0 chr4 150069275 150069454 -5560666 - ID_B1 SINE B4 0 224 7 1 1729 218 254 56 0 chr4 150070177 150070248 -5559872 + B1F SINE Alu 5 79 -70 1 1729 233 130 43 0 chr4 150070278 150070324 -5559796 - MTD LTR MaLR -371 48 1 1 1729 369 258 67 0 chr4 150070359 150070448 -5559672 + PB1D10 SINE Alu 1 95 -22 1 1729 360 0 0 0 chr4 150070448 150070488 -5559632 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1729 207 0 0 0 chr4 150070805 150070828 -5559292 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1729 2338 83 3 27 chr4 150071572 150071855 -5558265 + ORR1A2 LTR MaLR 1 284 -43 1 1729 1431 53 21 5 chr4 150071855 150072046 -5558074 + B2_Mm2 SINE B2 1 194 -1 1 1729 2338 83 3 27 chr4 150072046 150072097 -5558023 + ORR1A2 LTR MaLR 285 327 0 1 1729 509 242 13 26 chr4 150072395 150072548 -5557572 + MER34A LTR ERV1 415 565 -6 1 1729 284 290 118 103 chr4 150073458 150073662 -5556458 + MTE2a LTR MaLR 1 207 -172 1 1729 261 0 0 0 chr4 150073689 150073718 -5556402 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1729 1132 48 0 0 chr4 150073718 150073855 -5556265 - B1_Mus1 SINE Alu -9 139 3 1 1729 1168 178 14 0 chr4 150073896 150074104 -5556016 - B3 SINE B2 -5 211 1 1 1729 650 224 115 0 chr4 150074107 150074263 -5555857 + MTE2a LTR MaLR 206 379 0 1 1729 3482 40 0 0 chr4 150074270 150074699 -5555421 - L1Md_T LINE L1 0 6582 6154 1 1729 1270 207 168 6 chr4 150075451 150075767 -5554353 - MTD LTR MaLR -35 384 18 2 1729 319 299 26 93 chr4 150075830 150075981 -5554139 - MER34A LTR ERV1 -109 462 322 2 1729 237 311 66 28 chr4 150076098 150076204 -5553916 - MER34A LTR ERV1 -477 110 1 2 1729 203 250 0 22 chr4 150076759 150076804 -5553316 + polypyrimidine Low_complexity Low_complexity 3 46 0 2 1729 1390 78 0 5 chr4 150076816 150077009 -5553111 - B2_Mm2 SINE B2 -1 194 3 2 1730 571 202 17 8 chr4 150078218 150078338 -5551782 + B1_Mur2 SINE Alu 9 129 -20 2 1730 419 159 11 0 chr4 150078345 150078433 -5551687 + B1_Mur2 SINE Alu 40 128 -21 2 1730 387 151 0 0 chr4 150078433 150078526 -5551594 + GA-rich Low_complexity Low_complexity 1 93 0 2 1730 673 130 0 0 chr4 150078531 150078639 -5551481 + B1_Mus2 SINE Alu 40 147 0 2 1730 21 0 0 0 chr4 150078644 150078665 -5551455 + AT_rich Low_complexity Low_complexity 1 21 0 2 1730 342 0 0 0 chr4 150079020 150079058 -5551062 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1730 612 228 24 0 chr4 150079826 150079953 -5550167 - RSINE1 SINE B4 -24 141 12 2 1730 284 336 17 8 chr4 150080362 150080479 -5549641 + MIRb SINE MIR 59 176 -92 2 1730 423 282 198 33 chr4 150083013 150083255 -5546865 + B4 SINE B4 1 282 -10 2 1730 441 0 0 0 chr4 150083285 150083334 -5546786 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1730 315 0 0 0 chr4 150083334 150083368 -5546752 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1730 245 262 15 15 chr4 150083458 150083524 -5546596 + GA-rich Low_complexity Low_complexity 3 68 0 2 1730 394 288 66 18 chr4 150083732 150083898 -5546222 + MER45C DNA Tip100 3 176 -777 2 1730 189 0 0 0 chr4 150084185 150084206 -5545914 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 2 1730 328 120 0 0 chr4 150084629 150084679 -5545441 - HAL1-3A_ME LINE L1 -834 2024 1975 2 1730 446 148 10 0 chr4 150084685 150084786 -5545334 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1730 1115 81 0 0 chr4 150084812 150084960 -5545160 - B1_Mus1 SINE Alu 0 148 1 2 1730 189 0 0 0 chr4 150084960 150084981 -5545139 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1730 315 279 122 15 chr4 150085042 150085173 -5544947 - B4A SINE B4 -147 145 1 2 1730 484 265 18 0 chr4 150085184 150085332 -5544788 + ID_B1 SINE B4 2 155 -137 2 1730 201 138 0 0 chr4 150085346 150085375 -5544745 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 1730 687 40 556 0 chr4 150085378 150085502 -5544618 - B2_Mm1a SINE B2 0 193 1 2 1730 1195 68 0 6 chr4 150086179 150086342 -5543778 + B2_Mm2 SINE B2 1 162 -33 2 1730 618 131 24 24 chr4 150086378 150086503 -5543617 - Lx9 LINE L1 -7 7637 7513 2 1730 1235 217 75 37 chr4 150086491 150086594 -5543526 - Lx9 LINE L1 -242 7402 7290 2 1730 1166 74 91 0 chr4 150086594 150086770 -5543350 - B2_Mm1t SINE B2 0 193 2 2 1730 1235 217 75 37 chr4 150086770 150086987 -5543133 - Lx9 LINE L1 -355 7289 7070 2 1730 337 236 68 38 chr4 150088007 150088112 -5542008 + B4 SINE B4 92 203 -89 2 1730 201 74 0 0 chr4 150088112 150088139 -5541981 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1730 337 236 68 38 chr4 150088139 150088165 -5541955 + B4 SINE B4 204 226 -66 2 1730 847 212 89 25 chr4 150088167 150088370 -5541750 + ID_B1 SINE B4 2 217 -7 2 1730 206 86 57 0 chr4 150088376 150088411 -5541709 + (CAAAC)n Simple_repeat Simple_repeat 1 37 0 2 1730 396 0 0 0 chr4 150088412 150088456 -5541664 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1730 661 226 75 7 chr4 150088592 150088739 -5541381 - B3A SINE B2 -3 195 39 2 1730 828 159 7 7 chr4 150088828 150088974 -5541146 + B1_Mus2 SINE Alu 1 146 -1 2 1730 965 137 0 6 chr4 150089583 150089752 -5540368 + (TCCCC)n Simple_repeat Simple_repeat 4 171 0 2 1730 847 130 0 0 chr4 150089777 150089908 -5540212 - B1_Mus1 SINE Alu -17 131 1 2 1730 768 260 32 53 chr4 150089957 150090241 -5539879 + B4A SINE B4 15 292 0 2 1730 507 202 0 0 chr4 150090247 150090366 -5539754 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 1730 427 306 85 34 chr4 150090376 150090552 -5539568 + B4 SINE B4 94 278 -14 2 1730 342 0 0 0 chr4 150090558 150090596 -5539524 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1730 189 0 0 0 chr4 150090873 150090894 -5539226 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1730 1373 62 17 0 chr4 150090945 150091122 -5538998 + B2_Mm2 SINE B2 3 182 -13 2 1730 352 75 0 29 chr4 150091156 150091225 -5538895 + B2_Mm1a SINE B2 127 193 0 2 1730 249 278 26 53 chr4 150092224 150092300 -5537820 - Tigger7 DNA MER2_type -19 2472 2399 2 1730 287 393 0 15 chr4 150092334 150092471 -5537649 + (CGTG)n Simple_repeat Simple_repeat 1 135 0 2 1730 390 254 0 0 chr4 150092475 150092617 -5537503 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 1730 1145 74 0 0 chr4 150092790 150092938 -5537182 - B1_Mus1 SINE Alu 0 148 1 2 1730 232 302 144 11 chr4 150093000 150093174 -5536946 - Tigger7 DNA MER2_type -1868 623 427 2 1730 522 195 169 0 chr4 150093179 150093297 -5536823 - B1_Mur2 SINE Alu 0 149 12 2 1730 230 299 41 76 chr4 150093326 150093471 -5536649 - Tigger7 DNA MER2_type -2050 441 302 2 1730 428 252 19 10 chr4 150093542 150093646 -5536474 - Tigger7 DNA MER2_type -2362 129 25 2 1730 219 36 0 0 chr4 150093652 150093680 -5536440 + (TGG)n Simple_repeat Simple_repeat 3 30 0 2 1730 452 290 0 46 chr4 150094793 150094945 -5535175 - HAL1-2a_MD LINE L1 -533 2491 2347 2 1730 231 308 25 66 chr4 150095009 150095207 -5534913 - RLTR21 LTR ERVK -331 1241 1052 2 1730 192 357 0 14 chr4 150095506 150095577 -5534543 - MIR SINE MIR -6 256 187 2 1730 222 37 0 0 chr4 150095577 150095604 -5534516 + (CATA)n Simple_repeat Simple_repeat 3 29 0 2 1730 396 0 0 0 chr4 150096223 150096267 -5533853 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1730 265 250 14 27 chr4 150096622 150096696 -5533424 + B1_Mur1 SINE Alu 74 146 -3 2 1730 468 0 0 0 chr4 150096699 150096751 -5533369 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1730 630 183 32 11 chr4 150096833 150097103 -5533017 + GA-rich Low_complexity Low_complexity 1 275 0 2 1730 330 26 0 0 chr4 150097194 150097233 -5532887 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1730 1048 52 7 0 chr4 150097233 150097368 -5532752 - B1_Mus2 SINE Alu -10 137 2 2 1730 1214 173 70 38 chr4 150097755 150098127 -5531993 + MTC LTR MaLR 1 421 0 2 1730 216 67 0 0 chr4 150098149 150098179 -5531941 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1730 318 134 0 0 chr4 150098179 150098246 -5531874 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1730 456 240 0 19 chr4 150098248 150098354 -5531766 - PB1 SINE Alu -11 116 13 2 1730 183 325 12 12 chr4 150099386 150099467 -5530653 - L3b LINE CR1 -230 252 172 2 1730 678 271 7 0 chr4 150100115 150100270 -5529850 + B3A SINE B2 1 156 -42 2 1730 716 216 100 30 chr4 150100756 150100956 -5529164 - B3 SINE B2 -2 214 1 2 1730 271 264 85 85 chr4 150101018 150101171 -5528949 + RSINE1 SINE B4 5 157 -8 2 1730 320 0 25 0 chr4 150101193 150101233 -5528887 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1730 555 313 24 64 chr4 150101268 150101461 -5528659 + B4A SINE B4 1 180 -112 2 1730 783 50 0 0 chr4 150101461 150101561 -5528559 + (CCAA)n Simple_repeat Simple_repeat 4 103 0 2 1730 555 313 24 64 chr4 150101561 150101664 -5528456 + B4A SINE B4 181 285 -7 2 1730 495 0 0 0 chr4 150101687 150101742 -5528378 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1730 269 274 0 40 chr4 150101969 150102045 -5528075 + (TATG)n Simple_repeat Simple_repeat 3 75 0 2 1730 453 42 42 0 chr4 150102057 150102129 -5527991 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1730 860 268 36 91 chr4 150102129 150102429 -5527691 - B4A SINE B4 -8 284 1 2 1730 536 179 26 70 chr4 150102792 150102906 -5527214 + PB1D9 SINE Alu 7 115 -5 2 1730 269 313 103 37 chr4 150103055 150103191 -5526929 + L1MB7 LINE L1 5486 5630 -554 2 1730 660 208 10 10 chr4 150103646 150104068 -5526052 + GA-rich Low_complexity Low_complexity 1 421 0 2 1730 663 300 80 22 chr4 150104074 150104388 -5525732 + L1MB7 LINE L1 5818 6149 -35 2 1730 23 0 0 0 chr4 150104641 150104664 -5525456 + GC_rich Low_complexity Low_complexity 1 23 0 2 1730 387 0 0 0 chr4 150104830 150104873 -5525247 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1730 226 267 80 0 chr4 150105071 150105146 -5524974 - ID2 SINE ID 0 83 3 2 1730 239 73 49 0 chr4 150105198 150105239 -5524881 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1730 456 214 0 0 chr4 150105239 150105328 -5524792 - B3 SINE B2 -121 95 7 2 1730 229 220 93 74 chr4 150105509 150105617 -5524503 - BC1_Mm scRNA scRNA -20 132 23 2 1730 529 290 23 0 chr4 150105754 150105885 -5524235 + B3A SINE B2 17 150 -48 2 1730 345 295 46 8 chr4 150106424 150106554 -5523566 - ORR1E LTR MaLR -215 144 10 2 1730 2483 50 12 12 chr4 150106722 150107049 -5523071 + ORR1A2 LTR MaLR 1 327 0 2 1730 1028 186 0 67 chr4 150107295 150107520 -5522600 + B3 SINE B2 1 210 -6 2 1730 1837 138 98 19 chr4 150107560 150107937 -5522183 + MTB_Mm LTR MaLR 1 407 0 2 1730 375 78 0 0 chr4 150107949 150108000 -5522120 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1730 536 286 118 28 chr4 150108009 150108264 -5521856 - B4A SINE B4 -14 278 1 2 1730 1200 319 55 6 chr4 150108380 150109050 -5521070 - Lx7 LINE L1 -1772 5924 5224 2 1730 258 198 143 36 chr4 150109079 150109163 -5520957 - PB1D10 SINE Alu -22 95 3 2 1730 408 253 0 0 chr4 150109569 150109656 -5520464 - ID_B1 SINE B4 -19 205 119 2 1730 243 307 13 39 chr4 150109743 150109821 -5520299 + ID4_ SINE ID 1 76 -7 2 1730 722 93 9 0 chr4 150109822 150109930 -5520190 + (GGAA)n Simple_repeat Simple_repeat 3 111 0 2 1730 337 301 102 74 chr4 150110025 150110201 -5519919 + ORR1E LTR MaLR 34 214 -145 2 1730 228 325 108 23 chr4 150110224 150110353 -5519767 + ORR1E LTR MaLR 229 368 -11 2 1730 319 265 102 0 chr4 150110834 150110932 -5519188 - PB1 SINE Alu -17 110 3 2 1730 393 160 35 7 chr4 150111044 150111189 -5518931 + CT-rich Low_complexity Low_complexity 1 149 0 2 1730 378 0 0 0 chr4 150111192 150111234 -5518886 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1730 313 287 128 30 chr4 150111505 150111638 -5518482 - RSINE1 SINE B4 -16 149 4 3 1730 351 127 0 0 chr4 150112007 150112070 -5518050 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1730 808 185 0 0 chr4 150112070 150112205 -5517915 - B1_Mus2 SINE Alu -12 135 1 3 1730 444 82 0 0 chr4 150112213 150112274 -5517846 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1730 1018 231 14 43 chr4 150113263 150113471 -5516649 - B3 SINE B2 -12 204 3 3 1730 891 131 33 40 chr4 150113928 150114079 -5516041 - B1_Mur4 SINE Alu 0 150 1 3 1730 554 221 114 8 chr4 150114094 150114226 -5515894 - B1F SINE Alu -2 147 2 3 1730 254 179 0 51 chr4 150114858 150114917 -5515203 - ORR1B1 LTR MaLR -338 56 1 3 1730 1873 142 29 73 chr4 150114986 150115327 -5514793 - ORR1A3 LTR MaLR 0 326 1 3 1730 515 56 0 14 chr4 150115555 150115627 -5514493 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1730 1017 169 107 5 chr4 150115773 150115969 -5514151 + B3 SINE B2 1 216 0 3 1730 29 28 0 0 chr4 150115975 150116011 -5514109 + AT_rich Low_complexity Low_complexity 1 36 0 3 1730 408 284 7 43 chr4 150116044 150116184 -5513936 + RSINE1 SINE B4 15 149 -16 3 1730 408 97 0 0 chr4 150116184 150116246 -5513874 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1730 270 0 0 0 chr4 150116246 150116275 -5513845 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3 1730 556 252 56 35 chr4 150116387 150116531 -5513589 + B1F SINE Alu 2 148 -1 3 1730 359 253 25 0 chr4 150116531 150116610 -5513510 + ID4_ SINE ID 1 81 -2 3 1730 298 203 12 86 chr4 150116958 150117039 -5513081 + RLTR25A LTR ERVK 485 559 -544 3 1730 750 114 7 143 chr4 150116971 150117125 -5512995 + B1_Mus2 SINE Alu 15 147 0 3 1730 287 275 37 24 chr4 150117471 150117482 -5512638 + ID4_ SINE ID 1 44 -39 3 1730 296 234 0 0 chr4 150117482 150117546 -5512574 + tRNA-Ala-GCA tRNA tRNA 4 67 -8 3 1730 248 315 21 21 chr4 150117553 150117565 -5512555 + ID_B1 SINE B4 1 94 -130 3 1730 225 94 0 0 chr4 150117576 150117608 -5512512 + (GGA)n Simple_repeat Simple_repeat 2 33 0 3 1730 225 294 190 19 chr4 150117617 150117822 -5512298 + L1ME2 LINE L1 5904 6143 -21 3 1730 255 238 50 11 chr4 150117867 150117954 -5512166 + B4 SINE B4 16 104 -188 3 1730 370 349 8 23 chr4 150117995 150118127 -5511993 + B4A SINE B4 91 220 -72 3 1730 324 0 0 0 chr4 150118173 150118209 -5511911 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1730 961 87 0 0 chr4 150118272 150118398 -5511722 - B1_Mus2 SINE Alu -21 126 1 3 1730 521 185 7 145 chr4 150118398 150118437 -5511683 - MT2B LTR ERVL -449 152 135 3 1730 866 189 37 159 chr4 150118663 150118908 -5511212 + B3 SINE B2 2 216 0 3 1730 302 329 0 0 chr4 150118920 150119182 -5510938 + (TG)n Simple_repeat Simple_repeat 1 262 0 3 1730 748 220 131 0 chr4 150119223 150119414 -5510706 + B3 SINE B2 1 216 0 3 1730 22 35 0 0 chr4 150120251 150120280 -5509840 + AT_rich Low_complexity Low_complexity 1 29 0 3 1730 275 96 19 0 chr4 150120456 150120508 -5509612 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1730 1223 34 7 0 chr4 150120958 150121104 -5509016 + B1_Mm SINE Alu 1 147 0 3 1730 206 77 0 49 chr4 150121106 150121147 -5508973 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1730 1210 81 0 0 chr4 150121697 150121845 -5508275 - B1_Mus1 SINE Alu 0 148 1 3 1730 216 0 0 0 chr4 150121893 150121917 -5508203 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1730 810 110 0 0 chr4 150121917 150122062 -5508058 + (GA)n Simple_repeat Simple_repeat 1 146 0 3 1730 330 271 106 31 chr4 150122072 150122232 -5507888 + L1MD LINE L1 3107 3278 -2868 3 1730 333 0 0 0 chr4 150122237 150122274 -5507846 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1730 495 200 29 20 chr4 150123950 150124052 -5506068 + PB1D10 SINE Alu 1 103 -14 3 1730 198 128 0 0 chr4 150124052 150124091 -5506029 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3 1730 900 226 45 5 chr4 150124286 150124486 -5505634 + ID_B1 SINE B4 1 208 -16 3 1730 215 351 38 25 chr4 150124540 150124619 -5505501 - L2c LINE L2 -191 3196 3117 3 1730 485 316 36 7 chr4 150124729 150124869 -5505251 - MER58C DNA MER1_type -24 191 48 3 1730 768 305 102 40 chr4 150124927 150125552 -5504568 + L1MB7 LINE L1 5476 6139 -45 3 1730 816 266 74 39 chr4 150125553 150125811 -5504309 + B4A SINE B4 1 267 -25 3 1730 940 75 7 7 chr4 150125815 150125963 -5504157 + (CA)n Simple_repeat Simple_repeat 1 148 0 3 1730 375 217 76 102 chr4 150126687 150126805 -5503315 - PB1D10 SINE Alu -2 115 1 3 1730 408 313 59 84 chr4 150126898 150126999 -5503121 + MLT1A0 LTR MaLR 81 184 -181 3 1730 1540 118 9 0 chr4 150126999 150127219 -5502901 - URR1B DNA MER1_type -1 224 3 3 1730 408 313 59 84 chr4 150127219 150127354 -5502766 + MLT1A0 LTR MaLR 185 311 -54 3 1730 767 142 8 0 chr4 150127882 150128016 -5502104 + (GAGAA)n Simple_repeat Simple_repeat 2 136 0 3 1730 1712 26 0 0 chr4 150128436 150128628 -5501492 - B2_Mm1t SINE B2 0 193 2 3 1730 294 314 22 115 chr4 150128675 150128863 -5501257 - ORR1E LTR MaLR -169 190 5 3 1730 297 325 91 77 chr4 150129039 150129259 -5500861 - MER21B LTR ERV1 -51 812 590 3 1730 959 168 78 0 chr4 150129269 150129448 -5500672 - B3 SINE B2 -4 212 20 3 1730 258 318 58 12 chr4 150129459 150129545 -5500575 - MER21B LTR ERV1 -263 600 511 3 1730 688 261 95 5 chr4 150129716 150129916 -5500204 - MER21B LTR ERV1 -563 300 83 3 1730 794 259 94 36 chr4 150129916 150130192 -5499928 + B4A SINE B4 1 292 0 3 1730 310 254 14 14 chr4 150130266 150130338 -5499782 - MER21B LTR ERV1 -769 94 23 3 1730 2224 164 71 8 chr4 150130402 150130796 -5499324 - MTD LTR MaLR 0 419 1 3 1730 340 307 0 0 chr4 150130796 150130808 -5499312 + B4A SINE B4 76 87 -205 3 1730 450 203 0 0 chr4 150130808 150130877 -5499243 + PB1D9 SINE Alu 3 71 -49 3 1730 937 290 54 65 chr4 150130939 150131216 -5498904 - B4 SINE B4 -1 291 18 3 1730 753 185 121 0 chr4 150131654 150131811 -5498309 - B3 SINE B2 -5 211 36 3 1730 180 77 0 0 chr4 150132100 150132126 -5497994 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1730 432 0 0 0 chr4 150132638 150132686 -5497434 + (CTG)n Simple_repeat Simple_repeat 1 48 0 3 1730 185 246 164 0 chr4 150133705 150133766 -5496354 + MIR SINE MIR 69 139 -69 3 1730 360 288 0 0 chr4 150134002 150134148 -5495972 + (TG)n Simple_repeat Simple_repeat 2 147 0 3 1730 1038 250 25 101 chr4 150134151 150134467 -5495653 - B4A SINE B4 0 292 1 3 1730 667 276 25 25 chr4 150134958 150135155 -5494965 - B3A SINE B2 0 198 2 3 1730 373 301 102 37 chr4 150135201 150135446 -5494674 - L1MC2 LINE L1 -36 6308 6048 3 1730 1823 143 118 6 chr4 150135507 150135830 -5494290 - ORR1B2 LTR MaLR -8 359 1 3 1730 285 207 79 22 chr4 150135830 150135919 -5494201 - L1MC2 LINE L1 -351 5982 5889 3 1730 834 149 11 6 chr4 150135971 150136052 -5494068 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 3 1730 1254 90 0 0 chr4 150136052 150136230 -5493890 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 3 1730 1302 102 4 2 chr4 150136230 150136502 -5493618 + (TCTA)n Simple_repeat Simple_repeat 1 272 0 3 1730 318 75 0 0 chr4 150136502 150136542 -5493578 + (CCCA)n Simple_repeat Simple_repeat 3 42 0 3 1730 618 82 13 13 chr4 150136542 150136697 -5493423 + (TCTA)n Simple_repeat Simple_repeat 1 155 0 3 1730 1058 298 35 17 chr4 150136769 150137056 -5493064 - B4 SINE B4 0 292 1 3 1730 252 299 0 0 chr4 150137056 150137133 -5492987 - L1MC2 LINE L1 -1955 5830 5754 3 1730 633 258 58 21 chr4 150137244 150137434 -5492686 + B3A SINE B2 1 197 -1 3 1730 305 83 0 20 chr4 150137615 150137664 -5492456 + B3 SINE B2 163 210 -6 3 1730 289 388 0 10 chr4 150137697 150137801 -5492319 + B4A SINE B4 1 103 -189 3 1730 284 331 28 88 chr4 150138510 150138692 -5491428 + B4A SINE B4 102 272 -20 3 1730 396 0 0 0 chr4 150138910 150138954 -5491166 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1730 485 280 65 26 chr4 150139101 150139255 -5490865 + MER2 DNA MER2_type 2 161 -184 3 1730 347 104 0 0 chr4 150139255 150139303 -5490817 - HAL1-3A_ME LINE L1 -838 2020 1973 3 1730 476 238 8 18 chr4 150139303 150139696 -5490424 + (TG)n Simple_repeat Simple_repeat 1 388 0 3 1730 538 280 98 47 chr4 150139697 150139971 -5490149 - B4A SINE B4 0 292 5 3 1730 291 28 0 0 chr4 150140309 150140345 -5489775 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1730 209 390 10 0 chr4 150140873 150140973 -5489147 + MIRc SINE MIR 83 183 -85 3 1730 452 240 20 20 chr4 150141267 150141365 -5488755 - ID_B1 SINE B4 -38 186 89 3 1730 814 223 228 47 chr4 150141376 150141696 -5488424 - MTE2b LTR MaLR -1 378 1 3 1730 263 195 356 0 chr4 150141698 150141785 -5488335 - B1F SINE Alu -30 119 2 3 1730 494 277 77 52 chr4 150141796 150141990 -5488130 - MLT1B LTR MaLR -64 326 128 3 1730 1038 134 0 0 chr4 150141993 150142135 -5487985 + B1_Mur4 SINE Alu 1 142 -8 3 1730 236 169 34 0 chr4 150142136 150142195 -5487925 + (CAGA)n Simple_repeat Simple_repeat 3 63 0 3 1730 291 304 16 87 chr4 150142672 150142798 -5487322 + MLT1B LTR MaLR 132 248 -142 3 1730 334 257 0 0 chr4 150142812 150142882 -5487238 + B4A SINE B4 29 98 -194 3 1730 234 62 0 0 chr4 150143050 150143082 -5487038 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1730 192 25 23 70 chr4 150143721 150143764 -5486356 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1730 297 327 5 163 chr4 150143840 150144030 -5486090 - RSINE1 SINE B4 -2 163 4 3 1730 238 328 83 83 chr4 150144086 150144352 -5485768 + ORR1E LTR MaLR 94 359 0 3 1730 568 157 200 0 chr4 150145245 150145360 -5484760 + B1_Mur1 SINE Alu 2 139 -10 4 1730 1365 148 5 5 chr4 150145387 150145598 -5484522 + B3 SINE B2 6 216 0 4 1730 475 268 84 13 chr4 150145624 150145779 -5484341 + B4A SINE B4 7 172 -120 4 1730 828 182 0 0 chr4 150145878 150146010 -5484110 + B1_Mur4 SINE Alu 11 142 -8 4 1730 677 282 12 0 chr4 150146019 150146182 -5483938 - RSINE1 SINE B4 0 165 1 4 1730 347 254 0 0 chr4 150146219 150146290 -5483830 + PB1D10 SINE Alu 41 111 -6 4 1730 303 28 0 0 chr4 150146810 150146846 -5483274 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1730 1147 172 57 0 chr4 150146846 150147038 -5483082 - B3 SINE B2 -13 203 1 4 1730 505 316 94 19 chr4 150147689 150147902 -5482218 + LTR86A1 LTR ERVL 5 233 -280 4 1730 659 303 34 0 chr4 150148747 150148925 -5481195 + B3A SINE B2 14 197 -1 4 1730 1044 151 0 0 chr4 150148929 150149108 -5481012 + GA-rich Low_complexity Low_complexity 1 179 0 4 1730 597 40 0 0 chr4 150149109 150149185 -5480935 + (GAA)n Simple_repeat Simple_repeat 1 76 0 4 1730 290 256 123 39 chr4 150149477 150149607 -5480513 + MLT2E LTR ERVL 179 319 -309 4 1730 223 311 55 64 chr4 150149781 150149831 -5480289 - ID_B1 SINE B4 -104 120 12 4 1730 227 254 67 17 chr4 150149831 150149891 -5480229 - ID4 SINE ID -9 74 12 4 1730 297 0 0 0 chr4 150150894 150150927 -5479193 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1730 459 0 0 0 chr4 150150927 150150977 -5479143 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1730 814 169 62 0 chr4 150150978 150151108 -5479012 - B1_Mus1 SINE Alu -9 139 2 4 1730 754 124 0 8 chr4 150151283 150151405 -5478715 + B1_Mus2 SINE Alu 27 147 0 4 1730 891 166 0 0 chr4 150151498 150151710 -5478410 + (TG)n Simple_repeat Simple_repeat 1 212 0 4 1730 248 77 0 25 chr4 150152434 150152474 -5477646 + (CACCC)n Simple_repeat Simple_repeat 5 43 0 4 1730 237 295 99 21 chr4 150152995 150153137 -5476983 + L1MC4 LINE L1 6747 6899 -1143 4 1730 351 44 0 0 chr4 150153210 150153255 -5476865 + (GGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1730 1152 101 0 0 chr4 150153261 150153439 -5476681 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 4 1730 228 35 0 0 chr4 150153939 150153968 -5476152 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1730 414 0 0 0 chr4 150153968 150154013 -5476107 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1730 620 241 179 20 chr4 150154052 150154298 -5475822 - B4A SINE B4 -6 286 2 4 1730 243 88 0 0 chr4 150154327 150154361 -5475759 + (CCCCCA)n Simple_repeat Simple_repeat 4 37 0 4 1730 572 218 212 0 chr4 150155062 150155232 -5474888 + ID_B1 SINE B4 2 207 -17 4 1730 235 194 107 40 chr4 150156880 150156955 -5473165 - LTR48B LTR ERV1 -183 461 382 4 1730 446 211 134 21 chr4 150157344 150157441 -5472679 + PB1D10 SINE Alu 10 117 0 4 1730 334 279 8 126 chr4 150157441 150157471 -5472649 + ID_B1 SINE B4 91 202 -22 4 1730 281 227 13 26 chr4 150157471 150157548 -5472572 + MIRc SINE MIR 57 132 -136 4 1730 319 250 40 0 chr4 150157561 150157637 -5472483 + ID2 SINE ID 2 80 -3 4 1730 420 263 30 68 chr4 150157810 150158069 -5472051 - B4A SINE B4 -3 289 45 4 1730 250 260 96 0 chr4 150158034 150158107 -5472013 - B2_Mm1t SINE B2 -112 81 2 4 1730 1059 134 0 0 chr4 150158301 150158480 -5471640 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 4 1730 835 270 29 36 chr4 150159599 150159879 -5470241 - B4A SINE B4 -13 279 2 4 1730 309 109 0 0 chr4 150159947 150159993 -5470127 + (CATA)n Simple_repeat Simple_repeat 4 49 0 4 1730 601 203 15 0 chr4 150160001 150160134 -5469986 - Tigger7 DNA MER2_type -80 2411 2277 4 1730 1184 48 0 14 chr4 150160142 150160290 -5469830 + B1_Mus1 SINE Alu 3 148 0 4 1730 235 49 49 0 chr4 150160294 150160335 -5469785 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1730 790 254 32 5 chr4 150160369 150160559 -5469561 - Tigger7 DNA MER2_type -2083 408 214 4 1730 1061 239 34 79 chr4 150160880 150161171 -5468949 - B4 SINE B4 -14 278 1 4 1730 324 267 58 123 chr4 150161498 150161577 -5468543 + MLT1E1 LTR MaLR 396 477 -203 4 1730 600 220 75 8 chr4 150161577 150161710 -5468410 + RSINE1 SINE B4 3 144 -21 4 1730 334 315 58 52 chr4 150161710 150161768 -5468352 + B2_Mm2 SINE B2 2 193 -2 4 1730 259 336 17 60 chr4 150161763 150161880 -5468240 + MLT1D LTR MaLR 317 428 -77 4 1730 742 159 16 23 chr4 150161961 150162090 -5468030 - B1_Mur1 SINE Alu 0 149 22 4 1730 540 186 85 42 chr4 150162480 150162598 -5467522 - ID_B1 SINE B4 -7 217 95 4 1730 226 290 88 20 chr4 150162516 150162618 -5467502 - MT2B LTR ERVL -341 260 152 4 1730 381 226 0 0 chr4 150162712 150162774 -5467346 - RSINE1 SINE B4 -69 96 35 4 1730 269 317 0 55 chr4 150163054 150163181 -5466939 - L1M5 LINE L1 -2513 3633 3514 4 1730 263 277 156 58 chr4 150163402 150163619 -5466501 - MTEb LTR MaLR -8 371 109 4 1730 976 212 27 32 chr4 150163618 150163837 -5466283 + ID_B1 SINE B4 7 224 0 4 1730 252 324 34 59 chr4 150163831 150163864 -5466256 - MTEb LTR MaLR -244 115 82 4 1730 457 29 0 55 chr4 150163864 150163937 -5466183 - L1Md_F3 LINE L1 -14 6570 6502 4 1730 252 324 34 59 chr4 150163937 150164021 -5466099 - MTEb LTR MaLR -278 81 1 4 1730 370 207 33 54 chr4 150164021 150164104 -5466016 - FAM SINE Alu -84 227 147 4 1730 475 355 58 39 chr4 150164110 150164439 -5465681 - L1M5 LINE L1 -2880 3266 2929 4 1730 1007 204 35 0 chr4 150164439 150164640 -5465480 - B3 SINE B2 -7 209 2 4 1730 475 355 58 39 chr4 150164640 150164670 -5465450 - L1M5 LINE L1 -3218 2928 2900 4 1730 432 0 0 0 chr4 150164734 150164782 -5465338 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1730 306 275 29 18 chr4 150164855 150165025 -5465095 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1730 180 77 0 0 chr4 150165118 150165144 -5464976 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1730 360 174 0 68 chr4 150165159 150165233 -5464887 - HAL1-3A_ME LINE L1 -822 2036 1968 4 1730 333 0 0 0 chr4 150165282 150165319 -5464801 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1730 497 276 178 0 chr4 150165434 150165608 -5464512 - ID_B1 SINE B4 -17 207 3 4 1730 325 328 57 137 chr4 150165687 150166001 -5464119 - L1MB8 LINE L1 -21 6157 5869 4 1730 266 228 18 0 chr4 150166054 150166111 -5464009 - MLT1A LTR MaLR -15 350 293 4 1730 302 275 43 60 chr4 150166118 150166234 -5463886 - PB1D10 SINE Alu -3 114 1 4 1730 627 324 44 79 chr4 150166253 150166428 -5463692 - MLT1A LTR MaLR -61 313 138 4 1730 454 283 0 16 chr4 150166428 150166550 -5463570 - PB1D7 SINE Alu 0 120 1 4 1730 627 324 44 79 chr4 150166550 150166612 -5463508 - MLT1A LTR MaLR -237 137 86 4 1730 2426 153 46 73 chr4 150166612 150166750 -5463370 - RMER4A LTR ERVK 0 466 349 4 1730 1238 85 6 0 chr4 150166750 150166927 -5463193 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 4 1730 2426 153 46 73 chr4 150166927 150167267 -5462853 - RMER4A LTR ERVK -118 348 1 4 1730 627 324 44 79 chr4 150167267 150167346 -5462774 - MLT1A LTR MaLR -289 85 8 4 1730 389 278 164 21 chr4 150167392 150167684 -5462436 - L1MB8 LINE L1 -395 5789 5468 4 1730 184 77 51 0 chr4 150168114 150168153 -5461967 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1730 603 275 105 108 chr4 150168222 150168508 -5461612 + B4 SINE B4 7 291 -1 4 1730 695 161 0 22 chr4 150169555 150169739 -5460381 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1730 1017 274 38 28 chr4 150169803 150170092 -5460028 + B4 SINE B4 1 292 0 4 1730 313 312 144 50 chr4 150170273 150170475 -5459645 + MER68 LTR ERVL 75 295 -268 4 1730 410 207 37 0 chr4 150170624 150170706 -5459414 - PB1D9 SINE Alu -6 114 30 4 1730 500 292 150 36 chr4 150170722 150171002 -5459118 - L1MB8 LINE L1 -2291 3855 3544 4 1730 727 180 57 7 chr4 150171010 150171150 -5458970 + B3A SINE B2 4 150 -48 4 1730 297 0 0 0 chr4 150171171 150171204 -5458916 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1730 458 295 101 81 chr4 150171222 150171580 -5458540 - MLT1A0 LTR MaLR 0 365 1 4 1730 847 215 30 39 chr4 150171726 150171929 -5458191 - B3 SINE B2 -6 210 10 4 1730 217 260 59 94 chr4 150171855 150171940 -5458180 - B4 SINE B4 -209 83 2 4 1730 681 275 98 20 chr4 150172458 150172755 -5457365 + L1MC1 LINE L1 6013 6332 -1 4 1730 23 33 0 0 chr4 150172918 150172948 -5457172 + AT_rich Low_complexity Low_complexity 1 30 0 4 1730 267 31 0 0 chr4 150173408 150173440 -5456680 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 4 1730 316 326 11 11 chr4 150174235 150174328 -5455792 + PB1D10 SINE Alu 1 93 -24 4 1730 405 316 39 88 chr4 150174417 150174533 -5455587 + B3A SINE B2 3 110 -88 4 1730 1328 158 13 35 chr4 150174533 150174762 -5455358 - URR1B DNA MER1_type 0 225 2 4 1730 405 316 39 88 chr4 150174762 150174850 -5455270 + B3A SINE B2 111 197 -1 4 1730 212 86 29 0 chr4 150175241 150175276 -5454844 + (TTG)n Simple_repeat Simple_repeat 2 37 0 4 1730 978 134 0 26 chr4 150175289 150175442 -5454678 - B1_Mur4 SINE Alu 0 150 2 4 1730 694 242 39 0 chr4 150175634 150175787 -5454333 - B3 SINE B2 -57 159 1 4 1730 317 255 78 39 chr4 150175879 150175981 -5454139 + MIRc SINE MIR 43 148 -120 4 1730 202 255 0 21 chr4 150176168 150176216 -5453904 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 1730 550 245 16 3 chr4 150176219 150176541 -5453579 + (CA)n Simple_repeat Simple_repeat 1 326 0 4 1730 789 272 67 17 chr4 150176587 150176931 -5453189 - L1_Mur3 LINE L1 -17 5863 5503 4 1730 1256 188 0 5 chr4 150177185 150177399 -5452721 - B3 SINE B2 -1 215 3 4 1730 261 83 0 0 chr4 150177948 150177984 -5452136 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 4 1730 783 275 76 22 chr4 150178790 150179065 -5451055 + B4A SINE B4 1 290 -2 4 1730 468 200 0 0 chr4 150179067 150179192 -5450928 + (CA)n Simple_repeat Simple_repeat 1 125 0 4 1730 201 94 0 0 chr4 150179233 150179265 -5450855 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 4 1730 327 222 102 14 chr4 150179292 150179392 -5450728 - PB1D10 SINE Alu -22 127 21 4 1730 531 31 0 0 chr4 150179399 150179464 -5450656 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1730 314 311 93 87 chr4 150179808 150180129 -5449991 + L2c LINE L2 3062 3384 -3 5 1730 306 0 0 0 chr4 150180395 150180429 -5449691 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1730 264 299 75 0 chr4 150180430 150180497 -5449623 - ID4 SINE ID -11 72 1 5 1730 463 347 45 29 chr4 150180837 150181080 -5449040 - Lx8 LINE L1 -359 7114 6868 5 1730 263 300 0 0 chr4 150181133 150181197 -5448923 - ID4_ SINE ID -64 88 25 5 1730 272 256 77 55 chr4 150181236 150181327 -5448793 - B1F1 SINE Alu -40 109 17 5 1730 186 287 66 107 chr4 150181852 150181973 -5448147 - MIRm SINE MIR -138 138 23 5 1730 265 262 0 97 chr4 150183137 150183230 -5446890 + MT2B LTR ERVL 157 240 -361 5 1730 537 230 159 0 chr4 150183147 150183273 -5446847 + B1_Mur2 SINE Alu 3 148 -1 5 1730 252 172 0 0 chr4 150183273 150183331 -5446789 + GA-rich Low_complexity Low_complexity 1 58 0 5 1730 285 174 27 80 chr4 150183332 150183407 -5446713 + ID4_ SINE ID 3 73 -10 5 1730 810 270 36 36 chr4 150183851 150184074 -5446046 - ID_B1 SINE B4 0 224 2 5 1730 352 265 37 47 chr4 150184074 150184171 -5445949 - PB1D10 SINE Alu -8 109 12 5 1730 215 145 28 28 chr4 150184559 150184630 -5445490 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1730 1037 92 23 0 chr4 150184678 150184851 -5445269 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 5 1730 569 163 15 15 chr4 150184868 150185005 -5445115 + (TATATG)n Simple_repeat Simple_repeat 2 138 0 5 1730 905 211 291 57 chr4 150185116 150185469 -5444651 - RLTR20C LTR ERVK 0 551 120 5 1730 4470 35 2 8 chr4 150185469 150185984 -5444136 - LTRIS3 LTR ERV1 0 512 1 5 1730 905 196 113 89 chr4 150185984 150186082 -5444038 - RLTR20C LTR ERVK -415 119 15 5 1730 239 311 40 0 chr4 150186247 150186321 -5443799 + ID4 SINE ID 1 77 -6 5 1730 183 205 0 43 chr4 150186723 150186769 -5443351 + L2b LINE L2 3148 3191 -184 5 1730 430 70 3 0 chr4 150186987 150187052 -5443068 + B1_Mus1 SINE Alu 2 67 -83 5 1730 395 0 0 39 chr4 150187057 150187109 -5443011 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 5 1730 521 246 138 84 chr4 150187218 150187493 -5442627 - B4A SINE B4 -1 291 2 5 1730 427 163 0 30 chr4 150187734 150187835 -5442285 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 5 1730 473 228 14 9 chr4 150187850 150188069 -5442051 + (TA)n Simple_repeat Simple_repeat 1 220 0 5 1730 563 215 94 22 chr4 150188211 150188349 -5441771 + MTEa LTR MaLR 2 149 -230 5 1730 618 174 45 9 chr4 150188324 150188434 -5441686 + B4A SINE B4 131 244 -48 5 1730 307 219 60 12 chr4 150188509 150188592 -5441528 + L1MC4a LINE L1 7789 7875 -7 5 1730 553 264 61 48 chr4 150188673 150188820 -5441300 + B1F1 SINE Alu 1 149 0 5 1730 590 295 0 0 chr4 150188699 150188821 -5441299 + ID_B1 SINE B4 102 223 -1 5 1730 245 167 0 18 chr4 150190150 150190205 -5439915 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1730 939 269 23 78 chr4 150190211 150190518 -5439602 - B4A SINE B4 0 292 3 5 1730 21 0 0 0 chr4 150191305 150191326 -5438794 + AT_rich Low_complexity Low_complexity 1 21 0 5 1730 699 261 87 5 chr4 150191455 150191651 -5438469 - B3 SINE B2 0 216 5 5 1730 702 123 23 0 chr4 150192293 150192423 -5437697 + (TC)n Simple_repeat Simple_repeat 1 133 0 5 1730 227 149 28 56 chr4 150194947 150195018 -5435102 + T-rich Low_complexity Low_complexity 2 70 0 5 1730 657 38 0 0 chr4 150195833 150195913 -5434207 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 5 1730 957 162 7 0 chr4 150195963 150196111 -5434009 - B1_Mur3 SINE Alu 0 149 1 5 1730 198 208 0 0 chr4 150196420 150196468 -5433652 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1730 414 0 0 0 chr4 150197915 150197961 -5432159 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1730 867 168 19 8 chr4 150198644 150198903 -5431217 + (TATG)n Simple_repeat Simple_repeat 1 262 0 5 1730 403 325 53 99 chr4 150200392 150200696 -5429424 - B4A SINE B4 0 292 3 5 1730 250 348 51 0 chr4 150201044 150201162 -5428958 + L1M5 LINE L1 5542 5665 -459 5 1730 488 129 0 0 chr4 150201891 150201961 -5428159 - B2_Mm2 SINE B2 -123 72 3 5 1730 288 214 70 14 chr4 150202207 150202278 -5427842 - PB1D10 SINE Alu -35 82 8 5 1730 223 309 61 35 chr4 150202229 150202343 -5427777 - B4A SINE B4 -147 145 29 5 1730 255 268 110 0 chr4 150203261 150203343 -5426777 + MIRc SINE MIR 73 163 -105 5 1730 371 181 229 21 chr4 150203790 150203886 -5426234 - PB1D10 SINE Alu -1 116 1 5 1730 3110 63 10 12 chr4 150204849 150205250 -5424870 - MTB LTR MaLR 0 400 1 5 1730 288 241 152 0 chr4 150205428 150205507 -5424613 - PB1D7 SINE Alu 0 120 30 5 1730 231 114 0 0 chr4 150205710 150205745 -5424375 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1730 288 243 27 13 chr4 150205772 150205847 -5424273 - ID4_ SINE ID 0 83 8 5 1730 233 89 22 0 chr4 150206811 150206856 -5423264 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 5 1730 512 283 21 14 chr4 150207222 150207362 -5422758 + B1F1 SINE Alu 1 141 -8 5 1730 1955 195 54 11 chr4 150207811 150208184 -5421936 - MTD LTR MaLR -30 389 1 5 1730 559 229 27 27 chr4 150208190 150208338 -5421782 - MTD-int LTR MaLR -5 1253 1106 5 1731 200 312 108 25 chr4 150208839 150208997 -5421123 - L2 LINE L2 -818 2601 2431 5 1731 479 289 221 4 chr4 150208997 150209277 -5420843 + MLT1C LTR MaLR 2 342 -125 5 1731 2101 191 37 7 chr4 150209900 150210328 -5419792 - BGLII_B LTR ERVK 0 441 1 5 1731 404 152 25 0 chr4 150211311 150211390 -5418730 + C-rich Low_complexity Low_complexity 3 83 0 5 1731 336 64 0 0 chr4 150212863 150212910 -5417210 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1731 218 365 6 40 chr4 150213026 150213255 -5416865 + (TCCA)n Simple_repeat Simple_repeat 1 221 0 5 1731 550 279 15 15 chr4 150213972 150214103 -5416017 - ID_B1 SINE B4 -8 216 86 5 1731 324 0 0 0 chr4 150214138 150214174 -5415946 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1731 804 173 7 21 chr4 150214186 150214328 -5415792 - RSINE1 SINE B4 -25 140 1 5 1731 245 233 105 40 chr4 150214335 150214411 -5415709 - ID4 SINE ID -1 82 2 5 1731 566 259 0 8 chr4 150214513 150214630 -5415490 + PB1D10 SINE Alu 1 116 -1 5 1731 323 246 49 92 chr4 150215076 150215235 -5414885 + B3A SINE B2 68 213 -3 5 1731 859 156 6 58 chr4 150215245 150215386 -5414734 + B1_Mur1 SINE Alu 2 137 -12 5 1731 201 74 0 0 chr4 150215386 150215413 -5414707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1731 859 156 6 58 chr4 150215413 150215427 -5414693 + B1_Mur1 SINE Alu 138 149 0 5 1731 303 345 13 45 chr4 150215527 150215682 -5414438 + HAL1-2a_MD LINE L1 2366 2515 -509 5 1731 485 264 0 84 chr4 150215655 150215693 -5414427 + HAL1-2a_MD LINE L1 2345 2382 -642 5 1731 939 147 0 0 chr4 150215693 150215870 -5414250 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 5 1731 485 264 0 84 chr4 150215870 150216009 -5414111 + HAL1-2a_MD LINE L1 2383 2507 -517 5 1731 184 30 29 29 chr4 150216020 150216054 -5414066 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 1731 1243 81 0 0 chr4 150216056 150216216 -5413904 - B2_Mm2 SINE B2 -35 160 1 5 1731 455 184 315 18 chr4 150216220 150216331 -5413789 - B1_Mus2 SINE Alu -3 144 1 5 1731 326 296 71 36 chr4 150217028 150217140 -5412980 + PB1D10 SINE Alu 1 116 -1 5 1731 778 293 18 27 chr4 150217504 150217725 -5412395 + MER58A DNA MER1_type 6 224 0 5 1731 432 0 0 0 chr4 150218015 150218063 -5412057 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1731 311 278 78 49 chr4 150218231 150218333 -5411787 + PB1D7 SINE Alu 15 119 -1 5 1731 402 291 162 0 chr4 150218469 150218648 -5411472 + L1MEd LINE L1 938 1145 -4974 5 1731 525 44 0 0 chr4 150218891 150218959 -5411161 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1731 1238 35 0 0 chr4 150218988 150219129 -5410991 + B1_Mus1 SINE Alu 2 142 -6 5 1731 234 0 0 0 chr4 150219140 150219166 -5410954 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1731 403 223 31 0 chr4 150219173 150219301 -5410819 + B3A SINE B2 2 192 -24 5 1731 774 216 10 80 chr4 150219307 150219508 -5410612 + ORR1D1 LTR MaLR 3 189 -185 5 1731 396 118 0 0 chr4 150219517 150219585 -5410535 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1731 719 195 96 40 chr4 150219587 150219759 -5410361 + ORR1D1 LTR MaLR 166 346 -28 5 1731 216 0 0 0 chr4 150219759 150219783 -5410337 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1731 719 195 96 40 chr4 150219783 150219808 -5410312 + ORR1D1 LTR MaLR 347 373 -1 5 1731 183 42 0 0 chr4 150219852 150219876 -5410244 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1731 483 133 87 22 chr4 150219876 150219968 -5410152 + B1_Mur4 SINE Alu 32 129 -21 5 1731 646 153 161 0 chr4 150222434 150222558 -5407562 - B1_Mur2 SINE Alu 0 149 6 5 1731 312 307 73 67 chr4 150222453 150222603 -5407517 - MT2B LTR ERVL -326 275 125 5 1731 221 260 38 38 chr4 150222639 150222719 -5407401 + L2a LINE L2 3347 3426 0 5 1731 432 0 0 0 chr4 150223109 150223157 -5406963 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1731 310 300 127 29 chr4 150223648 150223884 -5406236 - MIR SINE MIR 0 268 21 5 1731 395 223 95 19 chr4 150223884 150223989 -5406131 - PB1D10 SINE Alu -1 116 4 5 1731 24 0 0 0 chr4 150224235 150224259 -5405861 + AT_rich Low_complexity Low_complexity 1 24 0 5 1731 440 176 51 13 chr4 150224657 150224895 -5405225 + (TG)n Simple_repeat Simple_repeat 1 247 0 5 1731 577 233 9 0 chr4 150225128 150225244 -5404876 - RSINE1 SINE B4 -37 128 12 5 1731 1005 120 0 7 chr4 150225918 150226061 -5404059 + B1_Mus2 SINE Alu 1 142 -5 5 1731 795 101 0 0 chr4 150226088 150226207 -5403913 + (GAAAA)n Simple_repeat Simple_repeat 3 121 0 5 1731 309 114 0 0 chr4 150226951 150226995 -5403125 + HAL1-3A_ME LINE L1 1967 2010 -848 5 1731 266 280 0 8 chr4 150226997 150227123 -5402997 + (CA)n Simple_repeat Simple_repeat 1 125 0 5 1731 470 244 74 30 chr4 150227278 150227413 -5402707 + B1F SINE Alu 1 141 -8 6 1731 23 54 0 0 chr4 150227433 150227470 -5402650 + AT_rich Low_complexity Low_complexity 1 37 0 6 1731 609 52 0 0 chr4 150228738 150228815 -5401305 + (CATA)n Simple_repeat Simple_repeat 2 78 0 6 1731 234 132 71 29 chr4 150229215 150229285 -5400835 + (CGAG)n Simple_repeat Simple_repeat 4 76 0 6 1731 381 256 0 140 chr4 150231782 150231918 -5398202 + MT2B LTR ERVL 142 258 -343 6 1731 722 163 7 49 chr4 150231823 150231965 -5398155 + B1_Mus2 SINE Alu 12 147 0 6 1731 205 250 15 30 chr4 150232522 150232588 -5397532 + MIRc SINE MIR 201 265 -3 6 1731 1466 60 16 0 chr4 150232599 150232782 -5397338 - B2_Mm2 SINE B2 -7 188 3 6 1731 1712 16 5 0 chr4 150235796 150235988 -5394132 + B2_Mm1t SINE B2 1 193 0 6 1731 396 135 107 13 chr4 150238686 150238761 -5391359 - PB1D10 SINE Alu -11 106 25 6 1731 1036 245 25 0 chr4 150243157 150243361 -5386759 + ID_B1 SINE B4 1 209 -15 6 1731 285 29 0 0 chr4 150243381 150243415 -5386705 + (GGAAA)n Simple_repeat Simple_repeat 1 34 0 6 1731 192 375 61 18 chr4 150243950 150244064 -5386056 - L2 LINE L2 -563 2856 2738 6 1731 834 229 68 24 chr4 150244476 150244682 -5385438 - B3 SINE B2 0 216 2 6 1731 280 258 163 10 chr4 150247025 150247123 -5382997 + RSINE1 SINE B4 43 155 -10 6 1731 645 221 0 129 chr4 150247213 150247248 -5382872 - B1_Mur3 SINE Alu 0 149 127 6 1731 261 0 0 0 chr4 150247248 150247277 -5382843 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1731 645 221 0 129 chr4 150247277 150247412 -5382708 - B1_Mur3 SINE Alu -23 126 1 6 1731 404 284 80 22 chr4 150247442 150247579 -5382541 - B1F SINE Alu -2 147 3 6 1731 219 36 0 0 chr4 150247634 150247662 -5382458 + (G)n Simple_repeat Simple_repeat 1 28 0 6 1731 1234 34 7 0 chr4 150248378 150248524 -5381596 - B1_Mus1 SINE Alu 0 148 2 6 1731 234 95 0 125 chr4 150248709 150248757 -5381363 + ID_B1 SINE B4 76 123 -169 6 1731 202 195 0 89 chr4 150248764 150248854 -5381266 + (CCCCAG)n Simple_repeat Simple_repeat 4 85 0 6 1731 293 220 40 81 chr4 150248860 150248959 -5381161 + PB1D10 SINE Alu 22 116 -1 6 1731 358 284 0 11 chr4 150249354 150249443 -5380677 + RSINE1 SINE B4 78 165 0 6 1731 250 301 137 0 chr4 150249472 150249545 -5380575 + ID4 SINE ID 1 83 0 6 1731 586 257 36 14 chr4 150249901 150250039 -5380081 - RSINE1 SINE B4 -22 143 3 6 1731 327 25 0 0 chr4 150250102 150250142 -5379978 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1731 382 194 0 0 chr4 150250858 150250920 -5379200 + ID_B1 SINE B4 109 170 -54 6 1731 376 238 71 0 chr4 150250920 150250942 -5379178 + PB1D10 SINE Alu 28 117 0 6 1731 315 348 58 58 chr4 150251402 150251573 -5378547 + L1M5 LINE L1 2522 2692 -3454 6 1731 817 116 245 0 chr4 150251623 150251778 -5378342 + B2_Mm1t SINE B2 1 193 0 6 1731 1307 113 11 0 chr4 150251800 150251986 -5378134 + B2_Mm1a SINE B2 3 190 -3 6 1731 264 30 0 0 chr4 150252075 150252108 -5378012 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1731 249 98 0 0 chr4 150252108 150252149 -5377971 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 6 1731 849 155 0 57 chr4 150252176 150252333 -5377787 - B1_Mur3 SINE Alu 0 149 2 6 1731 1045 274 93 112 chr4 150254286 150254858 -5375262 + RMER21B LTR ERV1 2 562 -280 6 1731 2491 63 32 0 chr4 150255034 150255350 -5374770 - ORR1A2 LTR MaLR 0 327 2 6 1731 9469 126 29 130 chr4 150255351 150256469 -5373651 - ORR1A2-int LTR MaLR 0 1792 873 6 1731 1199 62 0 0 chr4 150256469 150256615 -5373505 - B1_Mus2 SINE Alu 0 147 2 6 1731 1158 82 0 0 chr4 150256622 150256768 -5373352 - B1_Mus2 SINE Alu 0 147 2 6 1731 9469 126 29 130 chr4 150256768 150257635 -5372485 - ORR1A2-int LTR MaLR -920 872 1 6 1731 2342 77 3 69 chr4 150257635 150257693 -5372427 - ORR1A2 LTR MaLR 0 327 287 6 1731 6576 23 3 0 chr4 150257693 150258440 -5371680 - L1Md_F2 LINE L1 0 6582 5834 6 1731 2342 77 3 69 chr4 150258440 150258658 -5371462 - ORR1A2 LTR MaLR -41 286 73 6 1731 2307 75 65 0 chr4 150258658 150258965 -5371155 + ORR1A2 LTR MaLR 1 327 0 6 1731 2342 77 3 69 chr4 150258965 150259037 -5371083 - ORR1A2 LTR MaLR -255 72 1 6 1731 889 128 0 70 chr4 150259204 150259347 -5370773 + B2_Mm2 SINE B2 1 133 -62 6 1731 438 186 0 0 chr4 150259353 150259439 -5370681 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 1731 760 232 18 19 chr4 150259979 150260162 -5369958 + B3 SINE B2 1 190 -3 6 1731 294 95 0 0 chr4 150260591 150260633 -5369487 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 6 1731 1142 134 0 43 chr4 150260665 150260690 -5369430 - B2_Mm1a SINE B2 -14 179 161 6 1731 360 64 0 0 chr4 150260690 150260737 -5369383 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 1731 1142 134 0 43 chr4 150260737 150260898 -5369222 - B2_Mm1a SINE B2 -33 160 1 6 1731 854 60 124 3 chr4 150261198 150261348 -5368772 + B2_Mm2 SINE B2 1 175 -41 6 1731 408 88 0 0 chr4 150261348 150261405 -5368715 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 6 1731 500 167 71 0 chr4 150261604 150261688 -5368432 - B1_Mus1 SINE Alu -58 90 1 6 1731 234 91 0 0 chr4 150261691 150261724 -5368396 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1731 1061 59 7 0 chr4 150261724 150261859 -5368261 - B1_Mus2 SINE Alu 0 147 12 6 1731 473 250 54 81 chr4 150261726 150261874 -5368246 - B4A SINE B4 -68 224 81 6 1731 415 218 236 0 chr4 150262345 150262455 -5367665 + B1_Mus1 SINE Alu 1 136 -12 6 1731 243 0 0 0 chr4 150262455 150262482 -5367638 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 1731 909 124 13 40 chr4 150263226 150263377 -5366743 - B1_Mur4 SINE Alu -3 147 1 6 1731 730 197 185 14 chr4 150263558 150263774 -5366346 + MTD LTR MaLR 165 417 -2 6 1731 733 213 94 17 chr4 150263776 150263957 -5366163 - Lx8 LINE L1 -661 6812 6618 6 1731 273 239 165 17 chr4 150264004 150264119 -5366001 - Lx8 LINE L1 -932 6541 6410 6 1731 765 216 85 25 chr4 150265122 150265321 -5364799 - B3 SINE B2 -5 211 1 6 1731 185 94 31 0 chr4 150265432 150265464 -5364656 + (AGGGGG)n Simple_repeat Simple_repeat 1 33 0 6 1731 805 181 112 11 chr4 150265486 150265665 -5364455 - MTD LTR MaLR 0 419 223 6 1731 3861 206 73 129 chr4 150265674 150265782 -5364338 - MTD-int LTR MaLR -16 1242 1144 6 1731 1200 48 7 0 chr4 150265782 150265928 -5364192 - B1_Mus1 SINE Alu 0 148 2 6 1731 3861 206 73 129 chr4 150265928 150265956 -5364164 - MTD-int LTR MaLR -115 1143 1125 6 1731 980 53 130 0 chr4 150265956 150266087 -5364033 + B1_Mus1 SINE Alu 1 148 0 6 1731 3861 206 73 129 chr4 150266087 150267264 -5362856 - MTD-int LTR MaLR -134 1124 2 6 1731 1478 184 129 55 chr4 150267263 150267642 -5362478 - MTD LTR MaLR 0 419 13 6 1731 998 44 82 0 chr4 150268122 150268257 -5361863 + L1Md_T LINE L1 6436 6581 -1 6 1731 252 86 0 0 chr4 150268261 150268296 -5361824 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1731 604 275 17 34 chr4 150268491 150268668 -5361452 - ID_B1 SINE B4 -8 216 43 6 1731 325 151 141 21 chr4 150269701 150269800 -5360320 - B1F SINE Alu -12 137 2 6 1731 351 231 49 148 chr4 150270335 150270457 -5359663 - B1_Mus1 SINE Alu -29 119 2 6 1731 739 63 270 0 chr4 150270574 150270685 -5359435 - B1_Mus1 SINE Alu -6 142 2 6 1731 527 169 134 8 chr4 150270716 150270835 -5359285 + B1_Mur2 SINE Alu 11 144 -5 6 1731 260 360 47 0 chr4 150270893 150270979 -5359141 - MLT1K LTR MaLR -212 383 294 6 1731 790 214 38 11 chr4 150274124 150274308 -5355812 + B3A SINE B2 2 190 -8 6 1731 415 206 107 10 chr4 150274491 150274594 -5355526 + PB1 SINE Alu 13 125 -2 6 1731 721 148 20 82 chr4 150275278 150275425 -5354695 + B1_Mur4 SINE Alu 12 149 -1 6 1731 1086 48 0 140 chr4 150275685 150275856 -5354264 + B1_Mus2 SINE Alu 1 147 0 6 1731 245 291 51 0 chr4 150276855 150276934 -5353186 - PB1D10 SINE Alu -12 105 23 6 1731 180 0 0 0 chr4 150276964 150276984 -5353136 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1731 914 139 0 0 chr4 150277015 150277144 -5352976 - B3 SINE B2 -87 129 1 6 1731 5525 27 3 0 chr4 150278539 150279196 -5350924 - MERVL-int LTR ERVL -312 5173 4515 6 1731 645 280 69 50 chr4 150279511 150279729 -5350391 + ID_B1 SINE B4 1 222 -2 6 1731 216 122 0 0 chr4 150279799 150279840 -5350280 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1731 773 225 14 13 chr4 150279859 150280044 -5350076 + B3A SINE B2 3 172 -23 6 1731 1335 70 47 36 chr4 150280187 150280380 -5349740 + B2_Mm2 SINE B2 1 195 0 6 1731 1124 108 56 17 chr4 150280483 150280662 -5349458 - B2_Mm2 SINE B2 -8 187 2 6 1731 287 200 77 39 chr4 150280917 150280995 -5349125 - ID4 SINE ID -2 81 1 6 1731 722 151 298 12 chr4 150281822 150281990 -5348130 + B3 SINE B2 1 216 0 6 1731 612 208 243 6 chr4 150282708 150282877 -5347243 + B3 SINE B2 3 211 -5 6 1731 1025 33 0 0 chr4 150282882 150283004 -5347116 + B1_Mm SINE Alu 17 138 -9 6 1731 225 0 0 0 chr4 150283004 150283029 -5347091 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1731 233 318 15 0 chr4 150283218 150283284 -5346836 + GA-rich Low_complexity Low_complexity 5 71 0 6 1731 844 105 14 57 chr4 150283292 150283433 -5346687 + B1_Mur4 SINE Alu 16 150 0 6 1731 784 201 71 0 chr4 150284467 150284621 -5345499 + B3A SINE B2 25 189 -9 6 1731 377 312 44 25 chr4 150284728 150284886 -5345234 - RSINE1 SINE B4 -2 163 3 6 1731 195 42 0 0 chr4 150285121 150285145 -5344975 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1731 1294 34 0 0 chr4 150285145 150285292 -5344828 - B1_Mus2 SINE Alu 0 147 1 6 1731 215 219 0 24 chr4 150285530 150285572 -5344548 + B1F SINE Alu 2 42 -107 6 1731 1045 74 0 14 chr4 150285968 150286106 -5344014 - B1_Mus2 SINE Alu -11 136 1 6 1731 345 211 88 0 chr4 150286301 150286395 -5343725 + PB1D7 SINE Alu 20 123 -4 6 1731 645 262 81 29 chr4 150286701 150286874 -5343246 + B3A SINE B2 1 182 -16 6 1731 28 0 0 0 chr4 150286912 150286940 -5343180 + AT_rich Low_complexity Low_complexity 1 28 0 6 1731 405 229 76 0 chr4 150287207 150287315 -5342805 - B1_Mur1 SINE Alu -32 117 1 7 1731 643 233 44 16 chr4 150287417 150287596 -5342524 + MTEa LTR MaLR 184 379 0 7 1731 355 248 17 42 chr4 150288219 150288337 -5341783 - PB1D9 SINE Alu -5 115 1 7 1731 225 0 0 0 chr4 150289600 150289625 -5340495 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1731 333 0 0 0 chr4 150290080 150290117 -5340003 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1731 225 0 0 0 chr4 150290117 150290141 -5339979 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1731 514 269 37 79 chr4 150290344 150290558 -5339562 + B4A SINE B4 1 205 -87 7 1731 1086 253 67 110 chr4 150291035 150291426 -5338694 + MTE2b LTR MaLR 6 379 0 7 1731 189 0 0 0 chr4 150291682 150291703 -5338417 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1731 238 274 95 0 chr4 150291846 150291930 -5338190 + MIR SINE MIR 31 122 -140 7 1731 308 254 115 10 chr4 150291930 150292066 -5338054 - RMER20B LTR ERVK -224 292 140 7 1731 479 264 61 6 chr4 150292173 150292337 -5337783 - MERVK26-int LTR ERVK -1 6918 6746 7 1731 3472 225 58 5 chr4 150292346 150293140 -5336980 - MERVK26-int LTR ERVK -1447 5472 4637 7 1731 1488 70 13 44 chr4 150293140 150293365 -5336755 + RMER6B LTR ERVK 1 218 -243 7 1731 1690 235 20 35 chr4 150293365 150293820 -5336300 - MERVK26-int LTR ERVK -2562 4357 3910 7 1731 1108 181 56 0 chr4 150293796 150294028 -5336092 - MERVK26-int LTR ERVK -3537 3382 3138 7 1731 180 267 107 19 chr4 150294292 150294395 -5335725 + MIR3 SINE MIR 13 124 -84 7 1731 344 323 125 74 chr4 150294839 150295310 -5334810 - RMER20B LTR ERVK -9 618 124 7 1731 431 239 38 114 chr4 150295657 150295707 -5334413 + B1F SINE Alu 1 50 -99 7 1731 1190 192 44 193 chr4 150295707 150295898 -5334222 - ORR1C2 LTR MaLR 0 384 186 7 1731 207 0 0 0 chr4 150295898 150295921 -5334199 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1731 1190 192 44 193 chr4 150295921 150295943 -5334177 - ORR1C2 LTR MaLR -199 185 173 7 1731 486 0 0 0 chr4 150295943 150295997 -5334123 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1731 1190 192 44 193 chr4 150295997 150296038 -5334082 - ORR1C2 LTR MaLR -212 172 157 7 1731 197 33 33 0 chr4 150296038 150296068 -5334052 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1731 1190 192 44 193 chr4 150296068 150296262 -5333858 - ORR1C2 LTR MaLR -228 156 1 7 1731 431 239 38 114 chr4 150296262 150296343 -5333777 + B1F SINE Alu 51 122 -27 7 1731 222 37 0 0 chr4 150296358 150296385 -5333735 + (CACCT)n Simple_repeat Simple_repeat 2 28 0 7 1731 544 191 215 13 chr4 150296385 150296534 -5333586 + RLTR18B LTR ERVK 14 192 -320 7 1731 274 240 230 0 chr4 150296769 150296869 -5333251 + B3A SINE B2 69 191 -7 7 1731 1539 28 0 6 chr4 150296946 150297124 -5332996 + B2_Mm2 SINE B2 1 177 -18 7 1731 192 40 0 0 chr4 150297124 150297149 -5332971 + (CATA)n Simple_repeat Simple_repeat 4 28 0 7 1731 28 46 0 44 chr4 150297153 150297221 -5332899 + AT_rich Low_complexity Low_complexity 1 65 0 7 1731 634 224 0 0 chr4 150297266 150297382 -5332738 - B1_Mur1 SINE Alu 0 149 34 7 1731 490 279 10 0 chr4 150298039 150298143 -5331977 - ID_B1 SINE B4 -15 209 105 7 1731 228 321 48 0 chr4 150298993 150299077 -5331043 - MIRb SINE MIR -171 97 10 7 1731 504 306 138 0 chr4 150299194 150299491 -5330629 + L1M3 LINE L1 5484 5821 -350 7 1731 870 152 15 0 chr4 150299643 150299775 -5330345 - B1_Mus2 SINE Alu -13 134 1 7 1731 1155 88 0 0 chr4 150299819 150299966 -5330154 + B1_Mus2 SINE Alu 1 147 0 7 1731 712 193 26 70 chr4 150299980 150300136 -5329984 + B1_Mur2 SINE Alu 1 149 0 7 1731 682 285 56 6 chr4 150300151 150300331 -5329789 - B3 SINE B2 -14 202 14 7 1731 587 198 18 9 chr4 150300452 150300564 -5329556 - B3A SINE B2 -85 113 1 7 1731 718 261 48 16 chr4 150300564 150300751 -5329369 - B3A SINE B2 -5 193 1 7 1731 1156 34 0 81 chr4 150300962 150301123 -5328997 + B1_Mus1 SINE Alu 1 148 0 7 1731 319 242 16 0 chr4 150301128 150301190 -5328930 + L1MEg LINE L1 1882 1944 -4140 7 1731 413 255 0 56 chr4 150301195 150301303 -5328817 - PB1D7 SINE Alu -13 107 6 7 1731 202 287 0 27 chr4 150301385 150301496 -5328624 + CT-rich Low_complexity Low_complexity 1 108 0 7 1731 770 228 175 0 chr4 150302353 150302542 -5327578 - ID_B1 SINE B4 0 224 3 7 1731 1514 63 16 16 chr4 150302637 150302831 -5327289 + B2_Mm2 SINE B2 2 195 0 7 1731 773 235 82 0 chr4 150303195 150303365 -5326755 - B3A SINE B2 -14 184 1 7 1731 1410 67 39 0 chr4 150303407 150303586 -5326534 + B2_Mm2 SINE B2 1 186 -9 7 1731 685 236 15 8 chr4 150303681 150303839 -5326281 - ID_B1 SINE B4 -63 229 71 7 1731 1447 109 13 31 chr4 150304104 150304332 -5325788 - ORR1A4 LTR MaLR 0 329 106 7 1731 1211 72 43 37 chr4 150304359 150304546 -5325574 + B2_Mm1t SINE B2 1 188 -5 7 1731 228 35 0 0 chr4 150304946 150304975 -5325145 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 7 1731 253 226 48 0 chr4 150304985 150305047 -5325073 - PB1D10 SINE Alu -22 95 31 7 1731 703 227 28 14 chr4 150305296 150305439 -5324681 - B1_Mur1 SINE Alu -2 147 3 7 1731 351 242 168 0 chr4 150305445 150305540 -5324580 - PB1D10 SINE Alu 0 117 7 7 1731 1434 148 5 0 chr4 150305550 150305767 -5324353 - URR1B DNA MER1_type -1 224 7 7 1731 388 267 12 0 chr4 150305922 150306008 -5324112 + PB1D10 SINE Alu 31 117 0 7 1731 465 202 4 42 chr4 150306075 150306343 -5323777 + (TA)n Simple_repeat Simple_repeat 1 257 0 7 1731 652 278 11 32 chr4 150306811 150307010 -5323110 + B3A SINE B2 21 216 0 7 1731 214 258 115 31 chr4 150307354 150307450 -5322670 - L2b LINE L2 -13 3362 3259 7 1731 200 188 0 0 chr4 150307768 150307800 -5322320 + (ATGGTG)n Simple_repeat Simple_repeat 1 32 0 7 1731 350 258 10 58 chr4 150308567 150308670 -5321450 + PB1D10 SINE Alu 10 107 -10 7 1731 1119 88 7 6 chr4 150308959 150309127 -5320993 - B2_Mm2 SINE B2 -31 162 2 7 1731 1007 219 52 9 chr4 150309163 150309375 -5320745 + ID_B1 SINE B4 2 222 -2 7 1731 278 256 82 68 chr4 150309687 150309834 -5320286 - RSINE1 SINE B4 -12 153 5 7 1731 1562 234 75 43 chr4 150309943 150309969 -5320151 + RMER4A LTR ERVK 1 23 -443 7 1731 4677 37 0 0 chr4 150309969 150310510 -5319610 - L1Md_F3 LINE L1 -14 6570 6030 7 1731 1562 234 75 43 chr4 150310510 150310925 -5319195 + RMER4A LTR ERVK 24 456 -10 7 1731 462 255 195 32 chr4 150311184 150311435 -5318685 + B4 SINE B4 1 292 0 7 1731 565 173 81 67 chr4 150311874 150312023 -5318097 + RSINE1 SINE B4 11 161 -4 7 1731 336 64 0 0 chr4 150312117 150312164 -5317956 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1731 296 256 8 57 chr4 150312332 150312456 -5317664 - L1M5 LINE L1 -766 5474 5357 7 1731 625 210 49 89 chr4 150313141 150313364 -5316756 - B3A SINE B2 -2 214 2 7 1731 894 124 17 7 chr4 150313761 150313919 -5316201 + B2_Mm2 SINE B2 1 173 -43 7 1731 333 0 0 0 chr4 150313966 150314003 -5316117 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1731 550 274 32 19 chr4 150314103 150314259 -5315861 - RSINE1 SINE B4 -5 160 3 7 1731 320 295 75 94 chr4 150314262 150314475 -5315645 - L1MDa LINE L1 -1050 5487 5279 7 1731 539 295 122 31 chr4 150314558 150314918 -5315202 - L1MDa LINE L1 -1333 5204 4812 7 1731 246 62 0 0 chr4 150314983 150315015 -5315105 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1731 832 315 13 43 chr4 150315040 150315339 -5314781 - B4A SINE B4 0 292 3 7 1731 414 57 0 0 chr4 150315368 150315421 -5314699 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1731 287 285 118 49 chr4 150315424 150315462 -5314658 - RSINE1 SINE B4 -10 155 2 7 1731 648 142 38 0 chr4 150315462 150315568 -5314552 - B3A SINE B2 -88 110 1 7 1731 1171 110 27 32 chr4 150315591 150315779 -5314341 - B2_Mm2 SINE B2 -4 191 5 7 1731 566 150 213 16 chr4 150315799 150315921 -5314199 - B1_Mus1 SINE Alu -1 147 2 7 1731 317 210 3 0 chr4 150316064 150316142 -5313978 - L1MDa LINE L1 -1882 4655 4571 7 1731 655 277 52 68 chr4 150316156 150316524 -5313596 - L1MDa LINE L1 -4787 1846 1485 7 1731 186 133 0 0 chr4 150316526 150316556 -5313564 + (TCCG)n Simple_repeat Simple_repeat 4 33 0 7 1731 300 318 18 0 chr4 150316687 150316797 -5313323 - PB1 SINE Alu -15 112 1 7 1731 1376 152 4 13 chr4 150317339 150317565 -5312555 - URR1B DNA MER1_type -1 224 1 7 1731 373 299 17 0 chr4 150317662 150317779 -5312341 - L1MDa LINE L1 -6432 201 83 7 1731 1411 39 78 0 chr4 150318012 150318191 -5311929 + B2_Mm1a SINE B2 1 193 0 7 1731 450 298 14 28 chr4 150318561 150318706 -5311414 + B1_Mur1 SINE Alu 3 145 -4 7 1731 1083 192 44 15 chr4 150319169 150319215 -5310905 - B3 SINE B2 -3 213 159 7 1731 189 0 0 0 chr4 150319215 150319236 -5310884 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1731 1083 192 44 15 chr4 150319236 150319395 -5310725 - B3 SINE B2 -58 158 2 7 1731 28 29 0 0 chr4 150319407 150319442 -5310678 + AT_rich Low_complexity Low_complexity 1 35 0 7 1731 311 43 64 0 chr4 150319504 150319551 -5310569 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 7 1731 261 0 0 0 chr4 150319619 150319648 -5310472 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1731 513 180 35 18 chr4 150320018 150320131 -5309989 - PB1D9 SINE Alu 0 120 6 7 1731 271 204 0 36 chr4 150320585 150320641 -5309479 - MLT1I LTR MaLR -3 408 355 7 1731 423 234 132 29 chr4 150320683 150320903 -5309217 - B4 SINE B4 0 292 1 7 1731 503 285 170 63 chr4 150320958 150321276 -5308844 + ORR1D2 LTR MaLR 2 353 -17 7 1731 310 137 0 56 chr4 150321662 150321716 -5308404 - B3A SINE B2 -139 59 9 7 1731 2790 172 37 56 chr4 150322515 150323087 -5307033 - RLTR31_Mm LTR ERVK 0 561 1 7 1731 419 274 146 6 chr4 150323311 150323469 -5306651 - B3A SINE B2 -18 180 1 7 1731 1072 88 7 26 chr4 150323670 150323822 -5306298 - B1_Mur4 SINE Alu 0 150 2 7 1731 262 159 6 17 chr4 150323906 150323973 -5306147 - L1M4 LINE L1 -2134 4012 3948 7 1731 566 321 0 0 chr4 150324031 150324165 -5305955 - ID_B1 SINE B4 -7 217 84 7 1731 845 89 0 8 chr4 150324165 150324290 -5305830 + (TTTTC)n Simple_repeat Simple_repeat 2 125 0 7 1731 312 196 136 58 chr4 150324301 150324404 -5305716 - PB1 SINE Alu -3 124 14 8 1731 425 315 81 56 chr4 150324657 150324936 -5305184 - ORR1E LTR MaLR -53 306 14 8 1731 1079 246 32 18 chr4 150325488 150325773 -5304347 - B4A SINE B4 -2 290 2 8 1731 404 223 55 55 chr4 150326507 150326616 -5303504 + PB1D9 SINE Alu 1 109 -11 8 1731 2431 91 0 6 chr4 150326685 150327006 -5303114 + ORR1A2 LTR MaLR 1 319 -8 8 1731 933 251 15 0 chr4 150327892 150328087 -5302033 - MTD LTR MaLR -181 238 41 8 1731 363 244 12 0 chr4 150328160 150328246 -5301874 + B1_Mur3 SINE Alu 1 87 -62 8 1731 1684 284 139 88 chr4 150328250 150329340 -5300780 - MTC-int LTR MaLR -62 1518 42 8 1731 1528 214 90 27 chr4 150329352 150329718 -5300402 - MTD LTR MaLR -13 406 18 8 1731 336 24 0 0 chr4 150329718 150329759 -5300361 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1731 270 173 19 0 chr4 150330090 150330142 -5299978 - B1F SINE Alu 0 149 97 8 1731 225 0 0 0 chr4 150330316 150330341 -5299779 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1731 831 262 27 0 chr4 150330497 150330680 -5299440 - B3 SINE B2 -28 188 1 8 1731 1036 201 10 5 chr4 150331500 150331695 -5298425 - B3A SINE B2 -2 196 1 8 1731 453 244 146 5 chr4 150331708 150331893 -5298227 - ID_B1 SINE B4 -13 211 1 8 1731 186 43 0 0 chr4 150331937 150331960 -5298160 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1731 1664 21 11 0 chr4 150331960 150332150 -5297970 - B2_Mm1a SINE B2 0 193 2 8 1731 235 273 36 0 chr4 150332659 150332714 -5297406 + RSINE1 SINE B4 4 60 -105 8 1731 230 343 39 0 chr4 150334014 150334116 -5296004 - Lx8 LINE L1 -219 7254 7149 8 1731 1163 78 0 6 chr4 150334144 150334312 -5295808 - Lx4A LINE L1 -1214 5844 5678 8 1731 250 26 0 49 chr4 150334344 150334385 -5295735 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1731 2223 97 18 59 chr4 150334415 150334756 -5295364 - ORR1A2 LTR MaLR 0 327 1 8 1731 3735 118 17 16 chr4 150334756 150335331 -5294789 - ORR1A2-int LTR MaLR 0 1963 1388 8 1731 319 26 0 0 chr4 150335331 150335370 -5294750 + LTRIS_Mus LTR ERV1 1 39 -548 8 1731 459 177 83 0 chr4 150335373 150335469 -5294651 + MuRRS4-int LTR ERV1 1101 1204 -3859 8 1731 763 138 38 23 chr4 150335469 150335602 -5294518 - ORR1A2 LTR MaLR -82 264 130 8 1731 1661 129 33 0 chr4 150335597 150335838 -5294282 - RMER19B LTR ERVK -17 885 637 8 1731 2632 155 110 12 chr4 150335838 150335926 -5294194 - RLTR20B1 LTR ERVK 0 563 457 8 1731 378 0 0 0 chr4 150335926 150335968 -5294152 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1731 2632 155 110 12 chr4 150335968 150336104 -5294016 - RLTR20B1 LTR ERVK -107 456 315 8 1731 378 0 0 0 chr4 150336104 150336146 -5293974 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1731 2632 155 110 12 chr4 150336146 150336428 -5293692 - RLTR20B1 LTR ERVK -249 314 8 8 1731 3128 146 129 17 chr4 150336420 150337007 -5293113 - RMER19B LTR ERVK -249 653 1 8 1731 2030 103 20 0 chr4 150337007 150337307 -5292813 - Lx4A LINE L1 -195 5682 5377 8 1731 7593 118 26 20 chr4 150337307 150338490 -5291630 + Lx4A LINE L1 5853 7044 -14 8 1731 517 14 14 14 chr4 150338490 150338561 -5291559 + (TAA)n Simple_repeat Simple_repeat 2 72 0 8 1731 639 204 32 6 chr4 150338844 150339002 -5291118 + U1 snRNA snRNA 2 163 -2 8 1731 329 279 13 0 chr4 150339045 150339124 -5290996 + B3A SINE B2 1 80 -118 8 1731 638 239 70 49 chr4 150339136 150339216 -5290904 + B3 SINE B2 1 76 -140 8 1731 1192 155 87 0 chr4 150339216 150339423 -5290697 - URR1B DNA MER1_type 0 225 1 8 1731 638 239 70 49 chr4 150339423 150339527 -5290593 + B3 SINE B2 77 189 -27 8 1731 203 98 0 68 chr4 150339548 150339576 -5290544 + (ATG)n Simple_repeat Simple_repeat 3 30 0 8 216 189 0 0 0 chr4 150339576 150339597 -5290523 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1732 1187 43 0 0 chr4 150339597 150339735 -5290385 - B1_Mus1 SINE Alu -10 138 1 8 1732 203 98 0 68 chr4 150339735 150339749 -5290371 + (ATG)n Simple_repeat Simple_repeat 3 14 0 8 1732 590 223 122 43 chr4 150339773 150339937 -5290183 + B3A SINE B2 21 197 -1 8 1732 795 206 70 102 chr4 150340199 150340652 -5289468 - RLTR20B3 LTR ERVK -13 564 5 8 1732 407 180 121 22 chr4 150341192 150341283 -5288837 - ID_B1 SINE B4 0 224 125 8 1732 538 293 14 14 chr4 150341410 150341552 -5288568 + B1F SINE Alu 1 142 -7 8 1732 689 256 115 71 chr4 150341572 150341841 -5288279 + B4 SINE B4 12 292 0 8 1732 365 200 111 0 chr4 150341862 150341952 -5288168 + HAL1-3A_ME LINE L1 1976 2075 -783 8 1732 1108 72 0 0 chr4 150342068 150342206 -5287914 + B1_Mus2 SINE Alu 1 138 -9 8 1732 320 333 57 8 chr4 150342380 150342504 -5287616 + RMER10B LTR ERVL 269 398 0 8 1732 821 215 9 95 chr4 150342769 150342980 -5287140 - B3A SINE B2 -5 193 1 8 1732 535 222 149 33 chr4 150343287 150343562 -5286558 + RSINE1 SINE B4 2 208 -16 8 1732 180 125 0 0 chr4 150343563 150343595 -5286525 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1732 278 257 69 18 chr4 150343697 150343829 -5286291 + B1_Mus2 SINE Alu 7 148 -1 8 1732 758 185 169 26 chr4 150344134 150344323 -5285797 + B3 SINE B2 1 216 0 8 1732 1511 59 37 0 chr4 150344343 150344530 -5285590 + B2_Mm2 SINE B2 1 194 -1 8 1732 1120 73 0 0 chr4 150344532 150344669 -5285451 + B1_Mm SINE Alu 1 137 -10 8 1732 261 0 0 0 chr4 150344787 150344816 -5285304 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 8 1732 288 206 31 31 chr4 150344953 150344985 -5285135 + MT2B LTR ERVL 228 259 -342 8 1732 567 252 0 0 chr4 150344985 150345088 -5285032 + PB1D10 SINE Alu 3 105 -12 8 1732 552 263 119 54 chr4 150345125 150345310 -5284810 + B3A SINE B2 2 198 0 8 1732 1350 178 67 61 chr4 150345285 150345615 -5284505 - RMER10A LTR ERVL 0 442 111 8 1732 2121 71 3 28 chr4 150345521 150345810 -5284310 + MTB LTR MaLR 115 396 0 8 1732 7858 78 48 2 chr4 150345810 150346860 -5283260 + MTB-int LTR MaLR 1 1098 0 8 1732 3201 61 10 2 chr4 150346860 150347257 -5282863 + MTB LTR MaLR 1 400 0 8 1732 737 94 9 19 chr4 150347257 150347351 -5282769 - MTB_Mm LTR MaLR -303 104 11 8 1732 7532 128 28 147 chr4 150347643 150347921 -5282199 - RLTR21 LTR ERVK 0 1572 1354 8 1732 1245 61 0 0 chr4 150347921 150348069 -5282051 - B1_Mus1 SINE Alu 0 148 1 8 1732 7532 128 28 147 chr4 150348069 150348366 -5281754 - RLTR21 LTR ERVK -219 1353 1139 8 1732 450 0 0 0 chr4 150348366 150348416 -5281704 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1732 7532 128 28 147 chr4 150348416 150348545 -5281575 - RLTR21 LTR ERVK -434 1138 1094 8 1732 239 95 48 0 chr4 150348545 150348587 -5281533 + (CATA)n Simple_repeat Simple_repeat 1 44 0 8 1732 7532 128 28 147 chr4 150348587 150349545 -5280575 - RLTR21 LTR ERVK -479 1093 106 8 1732 311 204 21 0 chr4 150349633 150349726 -5280394 + (TATG)n Simple_repeat Simple_repeat 4 98 0 8 1732 745 178 23 0 chr4 150349739 150349913 -5280207 + (TATG)n Simple_repeat Simple_repeat 1 178 0 8 1732 309 173 0 19 chr4 150349915 150349968 -5280152 - HAL1-3A_ME LINE L1 -831 2027 1976 8 1732 620 169 11 33 chr4 150350003 150350187 -5279933 + (TATG)n Simple_repeat Simple_repeat 1 180 0 8 1732 256 278 99 27 chr4 150350188 150350247 -5279873 + RLTR22_Mur LTR ERVK 1307 1367 -481 8 1732 335 278 0 0 chr4 150350247 150350319 -5279801 - ID4_ SINE ID -11 72 1 8 1732 256 278 99 27 chr4 150350319 150350370 -5279750 + RLTR22_Mur LTR ERVK 1368 1425 -423 8 1732 951 234 15 5 chr4 150350383 150350589 -5279531 - ID_B1 SINE B4 -16 208 1 8 1732 4829 161 71 15 chr4 150350857 150351711 -5278409 + RMER19B LTR ERVK 1 902 0 8 1732 650 277 91 20 chr4 150352207 150352406 -5277714 - B3 SINE B2 0 216 4 8 1732 484 281 109 19 chr4 150352425 150352581 -5277539 - B3 SINE B2 -46 170 1 8 1732 1150 140 88 5 chr4 150353350 150353421 -5276699 + B3 SINE B2 1 71 -145 8 1732 279 0 0 0 chr4 150353421 150353452 -5276668 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1732 1150 140 88 5 chr4 150353452 150353574 -5276546 + B3 SINE B2 72 208 -8 8 1732 713 148 98 30 chr4 150353613 150353745 -5276375 + B1_Mur3 SINE Alu 1 141 -8 8 1732 967 203 19 38 chr4 150353831 150354041 -5276079 + MTEb LTR MaLR 172 377 -2 8 1732 306 0 0 0 chr4 150354048 150354082 -5276038 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1732 488 311 175 30 chr4 150354454 150354722 -5275398 + L1MEf LINE L1 1040 1346 -5071 8 1732 3123 70 17 0 chr4 150354936 150355348 -5274772 + BGLII LTR ERVK 3 421 0 8 1732 2467 132 68 10 chr4 150355631 150356029 -5274091 - MTC LTR MaLR 0 421 1 8 1732 620 236 12 82 chr4 150356135 150356306 -5273814 + RSINE1 SINE B4 6 164 -1 8 1732 468 199 111 89 chr4 150356314 150356590 -5273530 + L1MEf LINE L1 2139 2418 -4090 8 1732 239 300 165 51 chr4 150356813 150356971 -5273149 + B4A SINE B4 45 220 -72 8 1732 465 229 83 83 chr4 150356864 150356997 -5273123 + B1F SINE Alu 17 149 0 8 1732 239 349 72 6 chr4 150357004 150357171 -5272949 + L1MEf LINE L1 2862 3039 -3282 8 1732 597 254 41 61 chr4 150357193 150357390 -5272730 - B3A SINE B2 -5 193 1 8 1732 519 284 92 106 chr4 150357414 150357706 -5272414 + B4 SINE B4 5 292 0 8 1732 456 195 24 12 chr4 150357743 150357909 -5272211 + (CA)n Simple_repeat Simple_repeat 1 168 0 8 1732 2654 36 2 249 chr4 150357996 150358511 -5271609 + RLTR10 LTR ERVK 1 388 -2 8 1732 14513 27 51 58 chr4 150358515 150360513 -5269607 + RLTR10-int LTR ERVK 3 1986 -1 8 1732 2468 58 3 21 chr4 150360513 150360849 -5269271 + RLTR10 LTR ERVK 1 330 -60 8 1732 253 127 26 66 chr4 150360866 150360942 -5269178 + RLTR10 LTR ERVK 259 331 -59 8 1732 982 39 15 15 chr4 150360958 150361090 -5269030 + RLTR10 LTR ERVK 259 390 0 8 1732 883 189 62 40 chr4 150361094 150361270 -5268850 + B3 SINE B2 1 180 -36 8 1732 1170 65 116 17 chr4 150361289 150361462 -5268658 + B2_Mm2 SINE B2 1 190 -5 8 1732 1187 274 29 37 chr4 150361562 150361946 -5268174 - MTE2a LTR MaLR 0 419 27 8 1732 528 248 31 23 chr4 150362558 150362686 -5267434 + RSINE1 SINE B4 15 143 -22 8 1732 518 174 101 0 chr4 150363144 150363253 -5266867 + MTC LTR MaLR 1 120 -301 8 1732 801 208 21 0 chr4 150363257 150363401 -5266719 - B1_Mur2 SINE Alu 0 149 3 8 1732 1824 140 17 3 chr4 150363411 150363704 -5266416 + MTC LTR MaLR 122 418 -3 8 1732 1019 128 0 13 chr4 150363809 150363967 -5266153 - B2_Mm2 SINE B2 -38 157 2 8 1732 570 310 34 24 chr4 150364003 150364211 -5265909 + B4 SINE B4 9 218 -74 8 1732 1035 264 49 57 chr4 150364179 150364528 -5265592 - ORR1E LTR MaLR -13 346 1 8 1732 791 257 111 17 chr4 150364680 150364969 -5265151 - MLT1B LTR MaLR -69 321 6 8 1732 1147 245 42 35 chr4 150365021 150365309 -5264811 + B4A SINE B4 2 291 -1 8 1732 611 281 130 31 chr4 150366220 150366474 -5263646 - MLT1A LTR MaLR -72 302 24 9 1732 1381 186 65 106 chr4 150367100 150367497 -5262623 - ORR1C2 LTR MaLR -1 383 3 9 1732 2677 61 3 0 chr4 150367660 150367986 -5262134 + ORR1A2 LTR MaLR 1 327 0 9 1732 621 275 67 6 chr4 150368113 150368292 -5261828 + B4A SINE B4 1 190 -102 9 1732 192 40 0 0 chr4 150368403 150368428 -5261692 + (C)n Simple_repeat Simple_repeat 1 25 0 9 1732 296 127 0 18 chr4 150368434 150368490 -5261630 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 9 1732 451 255 49 0 chr4 150368692 150368794 -5261326 - PB1D10 SINE Alu -8 109 3 9 1732 288 267 155 49 chr4 150368883 150369025 -5261095 - RMER15 LTR ERVL -2 573 417 9 1732 645 81 0 0 chr4 150369027 150369113 -5261007 + ORR1A2 LTR MaLR 143 228 -99 9 1732 890 152 7 0 chr4 150369834 150369972 -5260148 - B1_Mus2 SINE Alu 0 147 9 9 1732 456 214 0 104 chr4 150369878 150369993 -5260127 - MT2B LTR ERVL -344 257 155 9 1732 385 317 28 21 chr4 150370009 150370151 -5259969 - ID_B1 SINE B4 -79 145 3 9 1732 264 59 0 0 chr4 150370517 150370551 -5259569 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1732 276 30 0 0 chr4 150371402 150371435 -5258685 + (GGA)n Simple_repeat Simple_repeat 3 35 0 9 1732 233 271 0 0 chr4 150371975 150372023 -5258097 - RSINE1 SINE B4 -4 161 114 9 1732 225 145 46 21 chr4 150373367 150373422 -5256698 + PB1D7 SINE Alu 62 118 -2 9 1732 465 251 155 32 chr4 150373817 150374068 -5256052 - B4A SINE B4 -8 284 3 9 1732 258 168 50 16 chr4 150374118 150374194 -5255926 + B1F SINE Alu 41 149 0 9 1732 2686 129 24 0 chr4 150374966 150375376 -5254744 - MTC LTR MaLR -1 420 1 9 1732 242 276 49 62 chr4 150376012 150376093 -5254027 + ID4_ SINE ID 2 81 -2 9 1732 21 0 0 0 chr4 150376158 150376179 -5253941 + AT_rich Low_complexity Low_complexity 1 21 0 9 1732 355 303 39 29 chr4 150376243 150376345 -5253775 - PB1D10 SINE Alu -12 105 3 9 1732 432 310 7 53 chr4 150376345 150376406 -5253714 - ID SINE ID -143 81 28 9 1732 21 0 0 0 chr4 150377901 150377922 -5252198 + AT_rich Low_complexity Low_complexity 1 21 0 9 1732 345 140 0 0 chr4 150378733 150378790 -5251330 + (A)n Simple_repeat Simple_repeat 1 57 0 9 1732 345 247 0 25 chr4 150379776 150379855 -5250265 + ID4_ SINE ID 5 81 -2 9 1732 1326 229 7 29 chr4 150380160 150380482 -5249638 + MTD LTR MaLR 3 305 -102 9 1732 397 312 67 26 chr4 150380499 150380693 -5249427 + L1M4c LINE L1 1583 1784 -5224 9 1732 688 237 136 62 chr4 150380711 150381113 -5249007 + L1M4c LINE L1 1905 2314 -4694 9 1732 496 231 203 9 chr4 150381175 150381333 -5248787 + B3 SINE B2 10 198 0 9 1732 417 246 180 53 chr4 150381994 150382183 -5247937 + RMER15 LTR ERVL 346 558 -17 9 1732 1163 84 0 0 chr4 150382890 150383033 -5247087 + B1_Mus2 SINE Alu 2 144 -3 9 1732 298 215 119 60 chr4 150383174 150383258 -5246862 + RSINE1 SINE B4 23 111 -54 9 1732 246 278 116 12 chr4 150383695 150383859 -5246261 + L1M5 LINE L1 5699 5879 -565 9 1732 432 323 103 41 chr4 150383948 150384239 -5245881 + ORR1E LTR MaLR 8 316 -43 9 1732 449 283 109 0 chr4 150385134 150385272 -5244848 + RSINE1 SINE B4 4 156 -9 9 1732 333 269 112 62 chr4 150385308 150385486 -5244634 - B3A SINE B2 -11 187 1 9 1732 243 0 0 0 chr4 150385518 150385545 -5244575 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1732 738 215 93 16 chr4 150385567 150385761 -5244359 + B3 SINE B2 3 211 -5 9 1732 548 30 0 0 chr4 150386020 150386086 -5244034 + B1_Mus2 SINE Alu 69 134 -13 9 1732 207 0 0 0 chr4 150386087 150386110 -5244010 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1732 361 316 171 53 chr4 150387281 150387585 -5242535 + MER2 DNA MER2_type 1 340 -5 9 1732 222 200 25 0 chr4 150388176 150388216 -5241904 - B1F1 SINE Alu -100 49 9 9 1732 737 201 22 0 chr4 150388232 150388366 -5241754 - B1_Mur2 SINE Alu -1 148 12 9 1732 23 0 0 0 chr4 150388384 150388407 -5241713 + AT_rich Low_complexity Low_complexity 1 23 0 9 1732 644 281 20 7 chr4 150389254 150389401 -5240719 + RSINE1 SINE B4 4 152 -13 9 1732 342 0 0 0 chr4 150389402 150389440 -5240680 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1732 252 0 0 0 chr4 150389440 150389467 -5240653 + (GA)n Simple_repeat Simple_repeat 2 29 0 9 1732 299 307 0 0 chr4 150389608 150389709 -5240411 + L1MEc LINE L1 672 772 -5628 9 1732 317 287 29 10 chr4 150389760 150389862 -5240258 + PB1D9 SINE Alu 4 107 -13 9 1732 333 248 59 14 chr4 150389920 150390058 -5240062 - L1M4 LINE L1 -3157 2989 2842 9 1732 694 211 72 5 chr4 150390310 150390477 -5239643 - B3A SINE B2 -33 183 9 9 1732 2101 159 8 6 chr4 150390552 150390907 -5239213 + RLTR15 LTR ERVK 1 356 -3 9 1732 571 259 64 89 chr4 150391157 150391360 -5238760 - B3A SINE B2 0 198 1 9 1732 349 176 55 65 chr4 150391362 150391485 -5238635 - B1F2 SINE Alu -30 117 1 9 1732 1536 57 5 5 chr4 150391501 150391696 -5238424 - B2_Mm2 SINE B2 0 195 1 9 1732 328 317 67 41 chr4 150393975 150394169 -5235951 - L1MC4a LINE L1 -75 7807 7609 9 1732 409 303 268 39 chr4 150394209 150394725 -5235395 - L1MC4a LINE L1 -942 7053 6419 9 1732 327 335 133 7 chr4 150395118 150395268 -5234852 + MER44D DNA MER2_type 42 210 -495 9 1732 296 288 84 8 chr4 150395282 150395401 -5234719 + MER44D DNA MER2_type 270 397 -308 9 1732 688 284 5 92 chr4 150395666 150395883 -5234237 + B3A SINE B2 1 198 0 9 1732 228 249 265 22 chr4 150395891 150396072 -5234048 - L1MEf LINE L1 -4618 1582 1358 9 1732 291 314 47 9 chr4 150397115 150397221 -5232899 + PB1 SINE Alu 11 120 -7 9 1732 315 348 56 42 chr4 150397234 150397450 -5232670 + MLT1A1 LTR MaLR 156 374 -34 9 1732 626 269 0 7 chr4 150397466 150397601 -5232519 - B1_Mur1 SINE Alu -13 136 3 9 1732 659 277 106 0 chr4 150397697 150397885 -5232235 - B4A SINE B4 -2 290 83 9 1732 343 342 26 9 chr4 150398903 150399018 -5231102 - PB1D10 SINE Alu 0 117 1 9 1732 325 284 0 0 chr4 150400505 150400579 -5229541 - ID4_ SINE ID -8 75 2 9 1732 265 205 177 13 chr4 150400583 150400662 -5229458 - PB1D7 SINE Alu -7 113 22 9 1732 654 219 52 17 chr4 150400860 150401032 -5229088 + B3A SINE B2 2 179 -19 9 1732 712 230 0 0 chr4 150401086 150401225 -5228895 + B1F2 SINE Alu 5 143 -6 9 1732 418 254 85 31 chr4 150401358 150401488 -5228632 + RSINE1 SINE B4 11 147 -18 9 1732 1515 37 21 5 chr4 150401537 150401728 -5228392 + B2_Mm2 SINE B2 2 195 0 9 1732 726 179 217 0 chr4 150401836 150402020 -5228100 + URR1B DNA MER1_type 1 224 -1 9 1732 914 196 19 38 chr4 150402298 150402510 -5227610 + B3 SINE B2 9 216 0 9 1732 552 225 17 0 chr4 150402526 150402646 -5227474 - B3 SINE B2 0 216 95 9 1732 274 257 95 0 chr4 150403437 150403511 -5226609 + ID4_ SINE ID 3 83 0 9 1732 358 342 26 9 chr4 150403905 150404020 -5226100 + ORR1E LTR MaLR 20 136 -223 9 1732 686 279 95 17 chr4 150404071 150404312 -5225808 + MTD LTR MaLR 49 308 -111 9 1732 232 247 49 49 chr4 150404407 150404488 -5225632 + MTD LTR MaLR 281 361 -18 9 1732 617 214 67 63 chr4 150404820 150405014 -5225106 + B2_Mm2 SINE B2 2 193 0 9 1732 839 164 0 0 chr4 150405271 150405399 -5224721 + B1_Mus2 SINE Alu 1 128 -19 9 1732 231 61 0 0 chr4 150405425 150405458 -5224662 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 9 1732 212 321 35 58 chr4 150405640 150405726 -5224394 + RSINE1 SINE B4 7 90 -75 9 1732 480 18 0 0 chr4 150405756 150405813 -5224307 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1732 1467 126 18 0 chr4 150406723 150406945 -5223175 - URR1A DNA MER1_type 0 226 1 9 1732 613 269 99 0 chr4 150406991 150407162 -5222958 - B3 SINE B2 -28 188 1 9 1732 414 286 47 13 chr4 150407165 150407314 -5222806 + Tigger9b DNA MER2_type 470 623 -1 9 1732 300 217 0 68 chr4 150407452 150407526 -5222594 - ID2 SINE ID -11 72 4 9 1732 241 315 77 51 chr4 150409374 150409648 -5220472 + L1MC5 LINE L1 6633 6913 -1048 9 1732 267 328 30 53 chr4 150410306 150410438 -5219682 + MLT1A1 LTR MaLR 268 396 -12 9 1732 558 129 100 114 chr4 150411366 150411506 -5218614 + B1_Mur3 SINE Alu 2 139 -10 9 1732 275 0 0 28 chr4 150411506 150411542 -5218578 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1732 210 105 0 0 chr4 150412577 150412615 -5217505 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1732 1114 50 43 0 chr4 150412616 150412757 -5217363 - B1_Mus1 SINE Alu 0 148 2 9 1732 1246 34 0 7 chr4 150413129 150413276 -5216844 + B1_Mus2 SINE Alu 2 147 0 9 1732 180 0 0 0 chr4 150413654 150413674 -5216446 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 1732 805 239 33 28 chr4 150414173 150414384 -5215736 + B3 SINE B2 2 213 -3 9 1732 875 225 42 11 chr4 150414406 150414595 -5215525 + ID_B1 SINE B4 4 198 -26 9 1732 642 194 47 0 chr4 150415090 150415219 -5214901 + B1_Mus2 SINE Alu 12 146 -1 9 1732 200 59 0 29 chr4 150415236 150415271 -5214849 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9 1732 222 37 0 0 chr4 150416490 150416517 -5213603 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1732 387 241 80 75 chr4 150419529 150419717 -5210403 + B3A SINE B2 3 191 -7 9 1732 1213 92 32 11 chr4 150420239 150420426 -5209694 + B2_Mm1t SINE B2 2 192 -1 9 1732 892 279 228 40 chr4 150420806 150421249 -5208871 + MT2A LTR ERVL 1 526 -7 1 1732 1145 48 14 7 chr4 150421658 150421804 -5208316 + B1_Mm SINE Alu 1 147 0 1 1732 481 263 101 45 chr4 150423509 150423688 -5206432 - MIR SINE MIR -32 230 42 1 1732 519 260 0 0 chr4 150423858 150423958 -5206162 + PB1D10 SINE Alu 10 109 -8 1 1732 442 234 125 9 chr4 150423958 150423970 -5206150 + ID_B1 SINE B4 91 215 -9 1 1732 1702 11 5 0 chr4 150424517 150424708 -5205412 - B2_Mm1a SINE B2 0 193 2 1 1732 600 243 161 21 chr4 150425331 150425587 -5204533 + L1MB5 LINE L1 3948 4245 -1895 1 1732 450 207 49 0 chr4 150425623 150425705 -5204415 + RSINE1 SINE B4 56 141 -24 1 1732 286 279 78 79 chr4 150425738 150425952 -5204168 + RSINE1 SINE B4 78 283 -9 1 1732 218 175 0 0 chr4 150425979 150426019 -5204101 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1732 28 0 0 0 chr4 150426019 150426047 -5204073 + AT_rich Low_complexity Low_complexity 1 28 0 1 1732 410 258 64 27 chr4 150426057 150426244 -5203876 + L1MB5 LINE L1 4266 4459 -1681 1 1732 905 300 55 4 chr4 150426248 150426519 -5203601 + B4A SINE B4 2 286 -6 1 1732 309 89 0 0 chr4 150426601 150426646 -5203474 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1732 507 272 126 54 chr4 150426681 150427015 -5203105 + L1MB5 LINE L1 4498 4855 -1291 1 1732 1296 241 154 14 chr4 150427293 150427650 -5202470 - MTD LTR MaLR -12 407 1 1 1732 593 243 29 82 chr4 150427658 150427927 -5202193 + L1MB5 LINE L1 5074 5331 -815 1 1732 582 167 149 0 chr4 150427946 150428060 -5202060 + B1F SINE Alu 19 149 0 1 1732 607 249 24 36 chr4 150428062 150428266 -5201854 + L1MB5 LINE L1 5290 5494 -850 1 1732 333 318 81 50 chr4 150428604 150428826 -5201294 + L1MB5 LINE L1 5937 6165 -9 1 1732 721 124 122 16 chr4 150429033 150429156 -5200964 + B1_Mur4 SINE Alu 2 137 -13 1 1732 381 58 0 0 chr4 150429162 150429214 -5200906 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1732 533 291 20 26 chr4 150429227 150429379 -5200741 + B3 SINE B2 53 203 -13 1 1732 422 230 51 42 chr4 150430073 150430191 -5199929 - B3A SINE B2 -79 119 1 1 1732 264 333 94 75 chr4 150430416 150430575 -5199545 + B4 SINE B4 109 270 -22 1 1732 658 264 66 36 chr4 150433198 150433394 -5196726 + ID_B1 SINE B4 2 203 -21 1 1732 25 0 0 0 chr4 150434778 150434803 -5195317 + AT_rich Low_complexity Low_complexity 1 25 0 1 1732 32 0 0 0 chr4 150435405 150435437 -5194683 + AT_rich Low_complexity Low_complexity 1 32 0 1 1732 212 250 0 18 chr4 150436305 150436362 -5193758 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 1 1732 192 224 16 79 chr4 150436562 150436625 -5193495 - L3 LINE CR1 -115 4374 4316 1 1732 366 143 0 0 chr4 150436783 150436846 -5193274 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1732 777 136 104 15 chr4 150438393 150438527 -5191593 - B1_Mus1 SINE Alu -2 146 1 1 1732 335 348 64 8 chr4 150439528 150439682 -5190438 - MIRb SINE MIR -112 164 4 1 1732 1264 93 64 27 chr4 150440449 150440636 -5189484 - B2_Mm2 SINE B2 0 195 2 1 1732 387 354 88 7 chr4 150440675 150440823 -5189297 - RSINE1 SINE B4 -3 162 3 1 1732 402 280 65 6 chr4 150441374 150441527 -5188593 - B3A SINE B2 -27 168 2 1 1732 210 167 0 0 chr4 150443224 150443260 -5186860 + GA-rich Low_complexity Low_complexity 1 36 0 1 1732 198 0 0 0 chr4 150446507 150446529 -5183591 + (CACAG)n Simple_repeat Simple_repeat 4 25 0 1 1732 505 308 45 38 chr4 150448314 150448349 -5181771 - ID_B1 SINE B4 -27 265 196 1 1732 295 236 81 66 chr4 150448349 150448485 -5181635 - B1F SINE Alu -1 148 11 1 1732 505 308 45 38 chr4 150448485 150448577 -5181543 - ID_B1 SINE B4 -27 195 4 1 1732 209 176 0 0 chr4 150450943 150450977 -5179143 + CT-rich Low_complexity Low_complexity 2 35 0 1 1732 331 253 13 0 chr4 150451433 150451512 -5178608 - PB1D10 SINE Alu -35 82 3 1 1732 575 130 204 0 chr4 150452155 150452263 -5177857 + B3 SINE B2 1 130 -86 1 1732 263 305 24 63 chr4 150452263 150452281 -5177839 + RSINE1 SINE B4 2 122 -43 1 1732 916 157 45 16 chr4 150453427 150453614 -5176506 - B2_Mm2 SINE B2 0 198 1 1 1732 382 328 23 8 chr4 150454352 150454481 -5175639 - RSINE1 SINE B4 -31 134 4 1 1732 576 256 99 6 chr4 150454487 150454668 -5175452 - B3A SINE B2 0 198 1 1 1732 765 274 52 91 chr4 150455330 150455659 -5174461 + MTE2b LTR MaLR 64 379 0 1 1732 767 247 86 23 chr4 150456058 150456315 -5173805 + MTEa LTR MaLR 69 341 -38 1 1732 495 350 35 5 chr4 150456367 150456568 -5173552 + MER58A DNA MER1_type 2 208 -16 1 1732 248 314 181 0 chr4 150456620 150456725 -5173395 + PB1 SINE Alu 2 125 -2 1 1732 533 241 28 28 chr4 150459217 150459362 -5170758 - ID_B1 SINE B4 0 224 80 1 1732 369 43 0 0 chr4 150459458 150459505 -5170615 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1 1732 899 146 7 7 chr4 150459505 150459650 -5170470 - B1_Mur4 SINE Alu -5 145 1 1 1732 264 229 12 35 chr4 150460438 150460524 -5169596 + RSINE1 SINE B4 1 84 -81 1 1732 22 56 0 0 chr4 150460551 150460587 -5169533 + AT_rich Low_complexity Low_complexity 1 36 0 1 1732 26 30 0 0 chr4 150460891 150460924 -5169196 + AT_rich Low_complexity Low_complexity 1 33 0 1 1732 650 202 176 27 chr4 150461542 150461690 -5168430 + B3 SINE B2 1 180 -36 1 1732 189 0 0 0 chr4 150461690 150461711 -5168409 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1732 650 202 176 27 chr4 150461711 150461750 -5168370 + B3 SINE B2 181 216 0 1 1732 557 204 41 27 chr4 150461807 150461953 -5168167 + B1_Mur1 SINE Alu 2 149 0 1 1732 194 33 0 62 chr4 150461954 150461986 -5168134 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1732 368 262 38 45 chr4 150462302 150462434 -5167686 + RSINE1 SINE B4 2 132 -33 1 1732 217 222 0 18 chr4 150462947 150463002 -5167118 + (CCG)n Simple_repeat Simple_repeat 2 55 0 1 1732 238 196 17 35 chr4 150465505 150465563 -5164557 + MLT1A1 LTR MaLR 315 371 -37 1 1732 415 284 116 37 chr4 150465643 150465833 -5164287 + B4A SINE B4 1 205 -87 1 1732 320 206 0 0 chr4 150465829 150465892 -5164228 + PB1D10 SINE Alu 47 109 -8 1 1732 799 161 0 14 chr4 150465900 150466045 -5164075 + B1_Mur1 SINE Alu 7 149 0 1 1732 623 324 90 0 chr4 150466107 150466329 -5163791 + MER2 DNA MER2_type 96 337 -8 1 1732 423 272 80 7 chr4 150466389 150466526 -5163594 - MER5A DNA MER1_type -39 150 4 1 1732 615 263 62 14 chr4 150466826 150467055 -5163065 - L1MC4a LINE L1 -1083 6799 6546 1 1732 660 215 35 0 chr4 150467381 150467525 -5162595 + B1_Mur1 SINE Alu 1 149 0 1 1732 914 240 10 5 chr4 150467993 150468194 -5161926 + B3 SINE B2 5 206 -10 1 1732 536 214 0 0 chr4 150468196 150468299 -5161821 + B3 SINE B2 14 116 -100 1 1732 5994 154 78 5 chr4 150468304 150469436 -5160684 + RMER12B LTR ERVK 1 1214 -190 1 1732 293 321 54 29 chr4 150469475 150469604 -5160516 + B3 SINE B2 80 210 -6 1 1732 205 309 82 0 chr4 150469980 150470077 -5160043 - MIRb SINE MIR -161 107 3 1 1732 204 111 0 0 chr4 150470460 150470496 -5159624 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1733 577 217 79 7 chr4 150472616 150472755 -5157365 + B1_Mur2 SINE Alu 1 149 0 1 1733 398 220 92 30 chr4 150472917 150473048 -5157072 - ID_B1 SINE B4 0 224 86 1 1733 496 206 0 93 chr4 150473565 150473683 -5156437 - PB1D9 SINE Alu -1 119 13 1 1733 299 263 100 50 chr4 150473683 150473704 -5156416 - B4A SINE B4 -66 225 80 1 1733 859 83 8 0 chr4 150474393 150474513 -5155607 + B2_Mm2 SINE B2 10 130 -65 1 1733 180 0 0 0 chr4 150474517 150474537 -5155583 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1733 442 219 151 36 chr4 150474979 150475145 -5154975 + B3A SINE B2 1 185 -13 1 1733 608 137 106 8 chr4 150475200 150475332 -5154788 + B2_Mm2 SINE B2 42 186 -9 1 1733 625 274 34 11 chr4 150475702 150475879 -5154241 + ORR1D2 LTR MaLR 9 189 -181 1 1733 372 178 0 0 chr4 150475906 150475979 -5154141 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1733 450 335 136 0 chr4 150476523 150476780 -5153340 + MLT1A0 LTR MaLR 72 363 -2 1 1733 249 293 58 107 chr4 150476817 150477023 -5153097 + MLT1K LTR MaLR 197 392 -203 1 1733 281 320 38 51 chr4 150477174 150477332 -5152788 + RSINE1 SINE B4 2 157 -8 1 1733 755 240 66 5 chr4 150477378 150477575 -5152545 + B3 SINE B2 2 210 -6 1 1733 202 219 0 0 chr4 150478034 150478075 -5152045 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1733 189 0 0 0 chr4 150479310 150479331 -5150789 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1733 31 0 0 0 chr4 150481862 150481893 -5148227 + GC_rich Low_complexity Low_complexity 1 31 0 1 1733 218 175 0 0 chr4 150482411 150482451 -5147669 + C-rich Low_complexity Low_complexity 3 42 0 1 1733 22 0 0 0 chr4 150482533 150482555 -5147565 + GC_rich Low_complexity Low_complexity 1 22 0 1 1733 183 42 0 0 chr4 150483013 150483037 -5147083 + (G)n Simple_repeat Simple_repeat 1 24 0 1 1733 259 346 19 0 chr4 150485479 150485583 -5144537 - MIRc SINE MIR -128 140 35 1 1733 387 286 77 50 chr4 150485751 150485972 -5144148 + MLT1I LTR MaLR 67 293 -118 1 1733 869 177 64 25 chr4 150486150 150486353 -5143767 + B3 SINE B2 1 211 -5 1 1733 626 330 44 46 chr4 150486422 150486496 -5143624 + L1MB8 LINE L1 4861 4924 -1222 1 1733 1311 77 11 6 chr4 150486496 150486678 -5143442 + B2_Mm2 SINE B2 3 185 -10 1 1733 626 330 44 46 chr4 150486678 150487035 -5143085 + L1MB8 LINE L1 4925 5291 -855 1 1733 212 31 62 0 chr4 150487087 150487119 -5143001 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1733 588 323 30 53 chr4 150487119 150487223 -5142897 + L1MB8 LINE L1 5346 5441 -737 1 1733 490 195 143 38 chr4 150487223 150487356 -5142764 + B1_Mur1 SINE Alu 3 149 0 1 1733 588 323 30 53 chr4 150487356 150487588 -5142532 + L1MB8 LINE L1 5442 5674 -504 1 1733 392 311 130 41 chr4 150487608 150487900 -5142220 + L1MB8 LINE L1 5809 6126 -52 1 1733 1032 217 5 0 chr4 150487908 150488115 -5142005 + B3 SINE B2 1 208 -8 1 1733 438 108 0 0 chr4 150488143 150488217 -5141903 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1733 214 284 75 52 chr4 150488618 150488752 -5141368 + MIR3 SINE MIR 35 171 -37 1 1733 315 242 85 90 chr4 150488776 150488953 -5141167 + MLT1I LTR MaLR 314 489 0 1 1733 632 240 20 20 chr4 150490014 150490163 -5139957 + B1_Mur2 SINE Alu 1 149 0 1 1733 238 250 0 0 chr4 150490166 150490218 -5139902 + (CACG)n Simple_repeat Simple_repeat 4 55 0 1 1733 270 0 0 0 chr4 150490852 150490882 -5139238 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1733 428 234 21 8 chr4 150491150 150491262 -5138858 + PB1D7 SINE Alu 4 115 -5 1 1733 593 239 0 6 chr4 150492990 150493171 -5136949 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1733 241 372 36 7 chr4 150493746 150493884 -5136236 + L2a LINE L2 3019 3160 -215 1 1733 252 0 0 0 chr4 150496123 150496151 -5133969 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1733 678 154 29 22 chr4 150496151 150496282 -5133838 - B1_Mus1 SINE Alu -12 136 3 1 1733 291 314 214 6 chr4 150497202 150497375 -5132745 + L2a LINE L2 3217 3425 -1 1 1733 359 308 128 25 chr4 150497646 150497882 -5132238 + ORR1E LTR MaLR 16 272 -87 1 1733 714 105 0 0 chr4 150497918 150498023 -5132097 + (GAA)n Simple_repeat Simple_repeat 2 106 0 1 1733 1147 206 87 50 chr4 150498660 150499017 -5131103 - ORR1D2 LTR MaLR 0 370 1 1 1733 246 294 35 23 chr4 150499078 150499165 -5130955 + MLT1C LTR MaLR 59 146 -321 1 1733 250 193 20 170 chr4 150499900 150500000 -5130120 + MTE2a LTR MaLR 8 92 -287 1 1733 631 331 90 8 chr4 150500003 150500259 -5129861 + MTE2a LTR MaLR 98 374 -5 1 1733 547 210 10 0 chr4 150500906 150501006 -5129114 + PB1D9 SINE Alu 3 103 -17 2 1733 215 61 30 0 chr4 150505961 150505994 -5124126 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1733 546 219 40 16 chr4 150505994 150506119 -5124001 - B1_Mur1 SINE Alu -11 138 11 4 1733 254 313 37 92 chr4 150506027 150506136 -5123984 - MT2B LTR ERVL -344 257 155 5 1733 627 223 15 51 chr4 150507709 150507846 -5122274 - B1_Mur1 SINE Alu -12 137 6 6 1733 195 338 46 98 chr4 150507850 150508155 -5121965 + L2 LINE L2 2792 3080 -339 7 1733 729 0 0 0 chr4 150508647 150508728 -5121392 + (TTCCC)n Simple_repeat Simple_repeat 5 85 0 8 1733 258 32 0 0 chr4 150509905 150509936 -5120184 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1733 201 159 48 0 chr4 150510052 150510115 -5120005 + GA-rich Low_complexity Low_complexity 2 67 0 1 1733 296 259 23 12 chr4 150510731 150510817 -5119303 - L2a LINE L2 -42 3384 3298 1 1733 2880 262 66 46 chr4 150510879 150511787 -5118333 + RCHARR1 DNA MER1_type 1 926 -48 1 1733 233 313 30 38 chr4 150513488 150513621 -5116499 + RMER17C LTR ERVK 205 336 -74 1 1733 956 189 68 44 chr4 150514306 150514511 -5115609 - B3 SINE B2 -6 210 1 1 1733 264 286 0 0 chr4 150515027 150515104 -5115016 + G-rich Low_complexity Low_complexity 1 77 0 1 1733 450 0 0 0 chr4 150515194 150515244 -5114876 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1733 193 282 54 40 chr4 150516062 150516136 -5113984 - MIR3 SINE MIR -22 186 112 1 1733 869 179 78 6 chr4 150516487 150516667 -5113453 - B3 SINE B2 -16 200 8 1 1733 236 308 37 46 chr4 150516691 150516800 -5113320 - MIR SINE MIR -142 120 13 1 1733 368 88 0 17 chr4 150519691 150519749 -5110371 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1733 565 167 22 22 chr4 150519995 150520173 -5109947 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1733 592 133 49 25 chr4 150520184 150520515 -5109605 + (TG)n Simple_repeat Simple_repeat 1 339 0 2 1733 472 250 125 53 chr4 150520871 150521023 -5109097 - RSINE1 SINE B4 0 165 3 2 1733 1380 55 25 0 chr4 150521125 150521326 -5108794 - RLTRETN_Mm LTR ERVK -116 206 1 2 1733 3165 31 76 5 chr4 150521326 150521774 -5108346 - MMETn-int LTR ERVK 0 4844 4365 2 1733 456 19 0 0 chr4 150522663 150522716 -5107404 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1733 1277 116 82 59 chr4 150522908 150523128 -5106992 - URR1A DNA MER1_type 0 226 2 2 1733 269 310 0 44 chr4 150523137 150523228 -5106892 + MamGypLTR1c LTR Gypsy 162 248 -555 2 1733 288 0 0 0 chr4 150524643 150524675 -5105445 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1733 243 348 9 35 chr4 150526356 150526472 -5103648 + MLT1B LTR MaLR 249 361 -29 2 1733 334 179 0 21 chr4 150526665 150526762 -5103358 + GA-rich Low_complexity Low_complexity 2 96 0 2 1733 218 247 0 0 chr4 150527591 150527664 -5102456 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1733 447 257 0 11 chr4 150527684 150527861 -5102259 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 3 1733 410 192 23 57 chr4 150527878 150528055 -5102065 + (TCTCTG)n Simple_repeat Simple_repeat 6 176 0 3 1733 181 170 0 88 chr4 150528086 150528267 -5101853 + (TCTCTG)n Simple_repeat Simple_repeat 6 170 0 3 1733 503 222 0 49 chr4 150530237 150530360 -5099760 + PB1D10 SINE Alu 1 117 0 3 1733 375 162 29 14 chr4 150530363 150530432 -5099688 + ID4 SINE ID 2 71 -12 3 1733 669 348 62 41 chr4 150534006 150534374 -5095746 + MLT1J LTR MaLR 92 467 -45 3 1733 636 318 56 53 chr4 150537467 150537733 -5092387 - B4 SINE B4 -5 287 21 3 1733 246 371 52 19 chr4 150538184 150538338 -5091782 - MER20 DNA MER1_type -58 161 3 3 1733 457 248 64 50 chr4 150538923 150539063 -5091057 + ID_B1 SINE B4 82 223 -1 3 1733 291 378 96 14 chr4 150539616 150539836 -5090284 - MIRc SINE MIR 0 268 31 3 1733 1018 74 29 0 chr4 150540741 150540916 -5089204 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1733 442 293 69 0 chr4 150540934 150541050 -5089070 - B1F SINE Alu -21 128 5 3 1733 500 336 136 18 chr4 150542799 150543078 -5087042 + Lx7 LINE L1 6906 7217 -479 4 1733 284 0 28 0 chr4 150546434 150546470 -5083650 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1733 275 395 37 0 chr4 150549004 150549138 -5080982 + MLT1K LTR MaLR 428 566 -29 4 1733 343 241 0 57 chr4 150549522 150549610 -5080510 + B4 SINE B4 7 89 -203 4 1733 1106 236 14 0 chr4 150549612 150549820 -5080300 + B3 SINE B2 1 211 -5 4 1733 227 275 119 22 chr4 150550121 150550255 -5079865 + RLTR13D2 LTR ERVK 355 501 -522 4 1733 33 0 0 0 chr4 150551021 150551054 -5079066 + AT_rich Low_complexity Low_complexity 1 33 0 4 1733 311 203 29 0 chr4 150551481 150551550 -5078570 + ID_B1 SINE B4 86 156 -68 4 1733 265 240 156 0 chr4 150551550 150551577 -5078543 + PB1D10 SINE Alu 5 115 -2 4 1733 310 254 0 0 chr4 150551584 150551647 -5078473 + ID4_ SINE ID 3 65 -18 4 1733 305 353 48 56 chr4 150552932 150553184 -5076936 - RMER12 LTR ERVK -350 972 723 5 1733 330 26 0 0 chr4 150553582 150553621 -5076499 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1733 308 352 38 0 chr4 150554242 150554347 -5075773 + PB1D9 SINE Alu 12 120 0 5 1733 885 175 0 0 chr4 150554348 150554519 -5075601 + GA-rich Low_complexity Low_complexity 3 173 0 5 1733 216 326 54 33 chr4 150554576 150554668 -5075452 + MIRm SINE MIR 183 276 0 5 1733 288 200 0 0 chr4 150557382 150557472 -5072648 + CT-rich Low_complexity Low_complexity 2 91 0 5 1733 258 206 43 14 chr4 150557827 150557896 -5072224 + CT-rich Low_complexity Low_complexity 3 73 0 5 1733 413 313 78 45 chr4 150558071 150558225 -5071895 - B4A SINE B4 -132 160 2 5 1733 189 0 0 0 chr4 150558366 150558387 -5071733 + (CTG)n Simple_repeat Simple_repeat 3 23 0 5 1733 614 294 27 0 chr4 150558784 150558930 -5071190 + RSINE1 SINE B4 2 151 -14 5 1733 459 0 0 0 chr4 150558953 150559004 -5071116 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1733 378 274 85 0 chr4 150559227 150559333 -5070787 - Tigger7 DNA MER2_type -1417 1074 960 6 1733 867 357 40 6 chr4 150559340 150559667 -5070453 - Tigger7 DNA MER2_type -2151 340 3 6 1733 298 281 11 0 chr4 150561244 150561333 -5068787 - MIRc SINE MIR -3 265 176 6 1733 578 252 0 11 chr4 150562266 150562537 -5067583 + (TG)n Simple_repeat Simple_repeat 1 267 0 6 1733 551 272 12 48 chr4 150562537 150562703 -5067417 - RSINE1 SINE B4 0 165 6 6 1733 1247 66 22 11 chr4 150563617 150563801 -5066319 - B2_Mm2 SINE B2 -2 193 8 6 1733 1244 44 6 0 chr4 150564181 150564340 -5065780 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 6 1733 1103 43 64 7 chr4 150564343 150564483 -5065637 - B1_Mus1 SINE Alu 0 148 1 6 1733 2389 199 48 25 chr4 150564798 150565319 -5064801 + MT2A LTR ERVL 1 533 0 6 1733 1373 210 15 72 chr4 150565333 150565666 -5064454 + ORR1D1-int LTR MaLR 722 1035 -335 6 1733 852 191 28 22 chr4 150565666 150565848 -5064272 - URR1A DNA MER1_type 0 226 44 7 1733 1358 193 113 13 chr4 150565875 150566184 -5063936 + ORR1D1-int LTR MaLR 1030 1369 -1 6 1733 951 244 199 13 chr4 150566185 150566497 -5063623 + ORR1D1 LTR MaLR 1 370 -4 6 1733 522 293 67 143 chr4 150567265 150567671 -5062449 - MTE2b LTR MaLR -3 376 2 7 1733 433 233 150 0 chr4 150567862 150567995 -5062125 + RMER15 LTR ERVL 400 552 -23 7 1733 25 31 0 0 chr4 150568812 150568844 -5061276 + AT_rich Low_complexity Low_complexity 1 32 0 7 1733 342 378 6 6 chr4 150570089 150570262 -5059858 + (CCCA)n Simple_repeat Simple_repeat 2 174 0 7 1733 235 416 7 0 chr4 150570302 150570456 -5059664 + (CCCA)n Simple_repeat Simple_repeat 1 155 0 7 1733 763 323 19 0 chr4 150571483 150571746 -5058374 + MLT2D LTR ERVL 83 350 -64 7 1733 1392 227 115 33 chr4 150572135 150572500 -5057620 - MTD LTR MaLR -19 400 6 7 1733 658 223 218 41 chr4 150573708 150573951 -5056169 + B4A SINE B4 7 292 0 7 1733 531 222 0 10 chr4 150574397 150574497 -5055623 - PB1D7 SINE Alu -18 102 4 7 1733 23 0 0 0 chr4 150574752 150574775 -5055345 + AT_rich Low_complexity Low_complexity 1 23 0 7 1733 426 20 0 0 chr4 150576464 150576515 -5053605 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 8 1733 613 229 79 0 chr4 150577983 150578123 -5051997 - RSINE1 SINE B4 -6 159 9 8 1733 586 219 278 0 chr4 150578231 150578382 -5051738 - B3A SINE B2 -3 195 3 8 1733 793 259 116 58 chr4 150579839 150580167 -5049953 - MTE2b LTR MaLR -18 361 15 8 1733 315 0 0 0 chr4 150582848 150582883 -5047237 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1733 293 271 217 30 chr4 150583696 150583894 -5046226 + L2a LINE L2 3029 3263 -163 8 1733 1229 186 84 8 chr4 150583896 150584146 -5045974 + MER46C DNA MER2_type 1 269 -69 8 1733 420 268 434 4 chr4 150585389 150585647 -5044473 + ORR1D2 LTR MaLR 1 369 -1 8 1733 517 328 98 56 chr4 150586132 150586489 -5043631 + MLT1J LTR MaLR 33 449 -63 8 1733 659 125 328 6 chr4 150586746 150586903 -5043217 - URR1B DNA MER1_type -5 220 13 8 1733 334 270 12 13 chr4 150588586 150588682 -5041438 - B1_Mus2 SINE Alu -21 96 2 9 1733 307 263 42 10 chr4 150588600 150588696 -5041424 - B4 SINE B4 -122 170 72 9 1733 308 267 143 36 chr4 150590239 150590379 -5039741 + HAL1-3A_ME LINE L1 2284 2438 -420 9 1733 345 212 18 9 chr4 150590380 150590494 -5039626 + GA-rich Low_complexity Low_complexity 4 118 0 9 1733 328 333 19 0 chr4 150590788 150590896 -5039224 + Cheshire DNA MER1_type 169 278 -2142 9 1733 317 231 136 47 chr4 150591822 150591922 -5038198 - MLT1A LTR MaLR -301 107 1 9 1733 275 259 106 0 chr4 150592232 150592317 -5037803 - MIR SINE MIR -79 129 36 9 1733 332 360 36 16 chr4 150593918 150594110 -5036010 + MLT1C LTR MaLR 256 451 -16 9 1733 424 304 127 9 chr4 150594711 150594940 -5035180 + MLT1A0 LTR MaLR 1 256 -109 9 1733 318 194 0 0 chr4 150594944 150595016 -5035104 + (ATG)n Simple_repeat Simple_repeat 1 72 0 9 1733 263 306 210 10 chr4 150595022 150595217 -5034903 - MIR SINE MIR -1 261 28 1 1733 215 203 0 20 chr4 150595611 150595667 -5034453 + L2b LINE L2 3324 3375 -12 1 1733 302 173 13 0 chr4 150596390 150596465 -5033655 + CT-rich Low_complexity Low_complexity 4 79 0 1 1733 312 182 15 29 chr4 150596791 150596859 -5033261 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 1733 217 288 86 12 chr4 150597421 150597502 -5032618 - BC1_Mm scRNA scRNA -64 88 2 1 216 309 181 34 38 chr4 150601601 150601839 -5028281 + GA-rich Low_complexity Low_complexity 1 237 0 1 1734 197 98 24 0 chr4 150602206 150602247 -5027873 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1734 495 286 28 39 chr4 150602637 150602819 -5027301 + MLT1C LTR MaLR 60 239 -228 1 1734 592 86 108 0 chr4 150602821 150602914 -5027206 + B1_Mur4 SINE Alu 47 149 -1 1 1734 21 0 0 0 chr4 150602916 150602937 -5027183 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 575 250 8 8 chr4 150602942 150603075 -5027045 - B3 SINE B2 -12 204 72 1 1734 606 196 0 0 chr4 150603212 150603319 -5026801 - B3 SINE B2 -109 107 1 1 1734 252 214 105 23 chr4 150603425 150603511 -5026609 + MER74A LTR ERVL 189 281 -277 1 1734 357 159 0 0 chr4 150604041 150604104 -5026016 + CT-rich Low_complexity Low_complexity 1 63 0 1 1734 1062 244 14 5 chr4 150604105 150604323 -5025797 - ID_B1 SINE B4 -4 220 1 1 1734 327 351 107 0 chr4 150605183 150605351 -5024769 + MER117 DNA MER1_type 9 194 -3 1 1734 626 178 246 12 chr4 150606246 150606417 -5023703 - B3 SINE B2 -1 215 5 1 1734 593 232 112 0 chr4 150606581 150606706 -5023414 - B1_Mur1 SINE Alu -9 140 2 1 1734 261 197 0 0 chr4 150606797 150606858 -5023262 + (CCCA)n Simple_repeat Simple_repeat 4 64 0 1 1734 247 285 144 13 chr4 150607041 150607194 -5022926 - RLTR21 LTR ERVK -318 1254 1082 1 1734 414 139 76 0 chr4 150607449 150607528 -5022592 + PB1D7 SINE Alu 24 108 -12 1 1734 581 14 27 0 chr4 150607528 150607601 -5022519 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 1 1734 316 264 10 52 chr4 150608767 150608863 -5021257 - MER117 DNA MER1_type -32 165 74 1 1734 655 291 74 29 chr4 150609025 150609432 -5020688 + L1MC4 LINE L1 6628 7102 -940 1 1734 252 275 49 24 chr4 150610186 150610268 -5019852 - MER45A DNA Tip100 0 178 95 1 1734 319 355 103 11 chr4 150610524 150610698 -5019422 + L1ME4a LINE L1 5931 6120 -4 1 1734 21 0 0 0 chr4 150610757 150610778 -5019342 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 1025 123 6 0 chr4 150612438 150612617 -5017503 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1734 387 149 0 0 chr4 150612619 150612693 -5017427 + (CCCA)n Simple_repeat Simple_repeat 3 76 0 1 1734 444 270 9 0 chr4 150612703 150612814 -5017306 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1 1734 200 345 102 30 chr4 150612908 150613105 -5017015 - L2c LINE L2 -120 3267 3057 1 1734 412 322 79 105 chr4 150613360 150613780 -5016340 - Charlie8 DNA MER1_type -1957 471 63 1 1734 180 0 0 0 chr4 150613785 150613805 -5016315 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1734 489 265 128 8 chr4 150613828 150613961 -5016159 - RSINE1 SINE B4 -12 153 5 1 1734 950 204 39 10 chr4 150614694 150614897 -5015223 - B3 SINE B2 -7 209 1 1 1734 325 235 140 125 chr4 150615036 150615172 -5014948 + MER63B DNA AcHobo 298 435 -1 1 1734 279 0 0 0 chr4 150616401 150616432 -5013688 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1734 1267 225 35 25 chr4 150617832 150618187 -5011933 + MTEb LTR MaLR 4 353 -26 1 1734 272 329 69 46 chr4 150619804 150619854 -5010266 - MTE2a LTR MaLR 0 379 238 1 1734 477 176 70 53 chr4 150619854 150619968 -5010152 + B1_Mus2 SINE Alu 32 147 0 1 1734 272 329 69 46 chr4 150619968 150619979 -5010141 - MTE2a LTR MaLR 0 237 201 1 1734 800 251 179 28 chr4 150619971 150620262 -5009858 - MTE2a LTR MaLR -43 336 2 1 1734 255 247 11 23 chr4 150620548 150620635 -5009485 + CT-rich Low_complexity Low_complexity 3 88 0 1 1734 754 151 23 6 chr4 150620658 150620831 -5009289 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 1 1734 332 207 9 26 chr4 150620858 150620972 -5009148 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1 1734 249 228 88 8 chr4 150621110 150621235 -5008885 + MIRc SINE MIR 6 144 -124 1 1734 248 291 43 50 chr4 150621915 150622056 -5008064 - MER96B DNA hAT -267 150 11 1 1734 207 0 0 0 chr4 150623017 150623040 -5007080 + (AGGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1734 246 364 128 18 chr4 150623144 150623527 -5006593 + L1MD LINE L1 4146 4570 -1576 1 1734 308 337 0 0 chr4 150623555 150623650 -5006470 + (TG)n Simple_repeat Simple_repeat 1 95 0 1 1734 258 316 136 0 chr4 150623651 150623804 -5006316 - B4A SINE B4 -1 291 109 1 1734 515 356 69 9 chr4 150623885 150624205 -5005915 + L1MD LINE L1 4604 4942 -1204 1 1734 380 216 0 10 chr4 150624566 150624669 -5005451 + (TGG)n Simple_repeat Simple_repeat 2 103 0 1 1734 1233 131 0 5 chr4 150625435 150625827 -5004293 + (TCCA)n Simple_repeat Simple_repeat 1 390 0 1 1734 330 318 16 28 chr4 150625880 150626044 -5004076 + MIR SINE MIR 23 190 -86 1 1734 228 341 22 11 chr4 150626249 150626341 -5003779 - MER5A DNA MER1_type -77 112 20 1 1734 553 237 59 7 chr4 150626738 150626891 -5003229 + B4A SINE B4 86 246 -46 1 1734 195 307 40 13 chr4 150627005 150627081 -5003039 - L2 LINE L2 -1010 2409 2332 1 1734 456 281 0 0 chr4 150627841 150628117 -5002003 + (TG)n Simple_repeat Simple_repeat 1 276 0 1 1734 1113 234 49 31 chr4 150628117 150628404 -5001716 - B4A SINE B4 0 292 1 1 1734 200 160 40 0 chr4 150629119 150629169 -5000951 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 1 1734 189 147 0 29 chr4 150631433 150631468 -4998652 + L2b LINE L2 3322 3355 -20 1 1734 206 256 13 0 chr4 150632007 150632085 -4998035 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1734 497 314 12 6 chr4 150632111 150632284 -4997836 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1734 857 228 0 18 chr4 150632286 150632451 -4997669 - RSINE1 SINE B4 0 165 4 1 1734 183 250 38 19 chr4 150633241 150633294 -4996826 + MER5A DNA MER1_type 73 126 -63 1 1734 235 188 0 26 chr4 150633467 150633524 -4996596 + PB1D10 SINE Alu 62 116 -11 1 1734 180 111 0 0 chr4 150633524 150633551 -4996569 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 1 1734 271 0 25 25 chr4 150636032 150636072 -4994048 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1734 252 277 17 35 chr4 150639035 150639151 -4990969 + (CATATA)n Simple_repeat Simple_repeat 5 118 0 1 1734 236 289 33 26 chr4 150639346 150639499 -4990621 + (CATA)n Simple_repeat Simple_repeat 3 156 0 1 1734 251 333 16 44 chr4 150639538 150639720 -4990400 + (CATA)n Simple_repeat Simple_repeat 1 177 0 1 1734 468 0 0 0 chr4 150639850 150639902 -4990218 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1734 3356 38 10 10 chr4 150640085 150640485 -4989635 + MTB LTR MaLR 1 400 0 1 1734 525 55 0 0 chr4 150642509 150642582 -4987538 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1734 243 88 0 0 chr4 150643333 150643367 -4986753 + (GAA)n Simple_repeat Simple_repeat 2 35 0 1 1734 220 283 17 0 chr4 150643916 150643976 -4986144 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1734 234 321 27 36 chr4 150648255 150648365 -4981755 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1 1734 211 193 22 33 chr4 150648375 150648466 -4981654 + (TATG)n Simple_repeat Simple_repeat 3 92 0 1 1734 185 353 65 13 chr4 150649707 150649862 -4980258 + MIR3 SINE MIR 6 168 -40 1 1734 488 270 0 55 chr4 150650470 150650748 -4979372 + (TGGG)n Simple_repeat Simple_repeat 1 262 0 1 1734 209 238 0 54 chr4 150650772 150650901 -4979219 + (TGGG)n Simple_repeat Simple_repeat 1 122 0 1 1734 21 0 0 0 chr4 150653158 150653179 -4976941 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 1357 158 13 26 chr4 150653850 150654077 -4976043 + URR1A DNA MER1_type 1 224 -2 1 1734 184 350 146 0 chr4 150654488 150654625 -4975495 - L2 LINE L2 -1055 2364 2208 1 1734 3091 86 8 2 chr4 150655096 150655494 -4974626 + MTB LTR MaLR 1 400 0 1 1734 222 360 0 48 chr4 150655771 150655958 -4974162 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 1 1734 1002 92 0 0 chr4 150657103 150657255 -4972865 + (CA)n Simple_repeat Simple_repeat 2 153 0 1 1734 216 0 0 0 chr4 150657725 150657749 -4972371 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1734 476 79 40 0 chr4 150658421 150658497 -4971623 + (ATGGTG)n Simple_repeat Simple_repeat 1 79 0 1 1734 257 200 64 91 chr4 150658536 150658646 -4971474 - PB1 SINE Alu 0 127 21 1 1734 368 55 0 18 chr4 150659132 150659188 -4970932 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1734 531 143 3 65 chr4 150659193 150659494 -4970626 + (TA)n Simple_repeat Simple_repeat 1 282 0 1 1734 363 23 0 0 chr4 150663321 150663365 -4966755 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 1734 571 219 0 9 chr4 150664575 150664810 -4965310 + (CA)n Simple_repeat Simple_repeat 1 232 0 1 1734 497 277 2 9 chr4 150668004 150668585 -4961535 + (TG)n Simple_repeat Simple_repeat 1 576 0 1 1734 312 290 86 78 chr4 150668635 150668904 -4961216 + Lx9 LINE L1 5841 6111 -1533 1 1734 282 138 0 0 chr4 150669000 150669058 -4961062 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1734 282 116 0 0 chr4 150669464 150669507 -4960613 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1734 470 57 14 0 chr4 150669515 150669585 -4960535 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1734 308 330 103 90 chr4 150670042 150670275 -4959845 - MER58B DNA MER1_type 0 341 106 1 1734 1084 247 95 14 chr4 150671070 150671419 -4958701 + MTEb LTR MaLR 1 377 -2 1 1734 227 341 52 15 chr4 150672319 150672453 -4957667 - L2b LINE L2 -190 3185 3047 1 1734 202 297 98 90 chr4 150673300 150673422 -4956698 - MIRm SINE MIR -151 125 3 1 1734 405 0 0 0 chr4 150675780 150675825 -4954295 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1734 189 143 35 35 chr4 150677853 150677911 -4952209 + CT-rich Low_complexity Low_complexity 2 59 0 1 1734 335 341 134 4 chr4 150678480 150678757 -4951363 + L1MB5 LINE L1 5587 5899 -275 2 1734 251 175 17 34 chr4 150678769 150678828 -4951292 - ORR1E LTR MaLR 0 379 322 2 1734 360 0 0 0 chr4 150678854 150678894 -4951226 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1734 601 223 68 23 chr4 150678896 150679029 -4951091 - ID_B1 SINE B4 0 224 86 2 1734 824 255 120 4 chr4 150679033 150679280 -4950840 - ORR1E LTR MaLR -59 320 18 2 1734 432 273 126 25 chr4 150679285 150679484 -4950636 + L1MB5 LINE L1 5941 6159 -15 2 1734 934 237 0 48 chr4 150681406 150681614 -4948506 - B3A SINE B2 0 198 1 2 1734 338 268 107 3 chr4 150683597 150683739 -4946381 + MLT1A0 LTR MaLR 153 333 -57 2 1734 708 195 0 0 chr4 150683739 150683913 -4946207 + (TG)n Simple_repeat Simple_repeat 2 175 0 2 1734 744 186 0 0 chr4 150683943 150684110 -4946010 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 1734 180 360 81 11 chr4 150684671 150684758 -4945362 + MIR SINE MIR 27 119 -143 2 1734 24 32 0 0 chr4 150686229 150686260 -4943860 + AT_rich Low_complexity Low_complexity 1 31 0 2 1734 210 185 0 65 chr4 150687429 150687568 -4942552 + (CCTAA)n Simple_repeat Simple_repeat 2 131 0 2 1734 468 164 0 48 chr4 150687640 150687826 -4942294 + (CCTAA)n Simple_repeat Simple_repeat 3 179 0 2 1734 228 261 43 14 chr4 150689662 150689732 -4940388 - MIRb SINE MIR -170 98 27 2 1734 332 281 59 100 chr4 150690394 150690564 -4939556 - RMER30 DNA MER1_type -25 177 15 2 1734 369 291 148 7 chr4 150690993 150691142 -4938978 + B4A SINE B4 123 292 0 2 1734 219 179 0 0 chr4 150691272 150691311 -4938809 - L2b LINE L2 -7 3368 3330 2 1734 1222 13 13 0 chr4 150692208 150692360 -4937760 + (CTGTG)n Simple_repeat Simple_repeat 1 154 0 2 1734 1300 179 9 18 chr4 150692510 150692737 -4937383 - URR1A DNA MER1_type -1 225 1 2 1734 423 0 0 0 chr4 150693136 150693183 -4936937 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1734 1125 196 124 24 chr4 150694568 150694898 -4935222 + ORR1D2 LTR MaLR 1 363 -7 2 1734 527 261 144 22 chr4 150695031 150695247 -4934873 - L1MD1 LINE L1 -171 6071 5821 2 1734 293 313 59 25 chr4 150696289 150696407 -4933713 + MIRb SINE MIR 33 154 -114 2 1734 432 0 0 0 chr4 150696789 150696837 -4933283 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1734 311 284 111 21 chr4 150698095 150698239 -4931881 + HAL1-2a_MD LINE L1 2374 2530 -494 2 1734 331 365 31 0 chr4 150698266 150698425 -4931695 + HAL1-2a_MD LINE L1 2342 2505 -519 2 1734 207 0 0 0 chr4 150700915 150700938 -4929182 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 1734 750 305 14 14 chr4 150702036 150702249 -4927871 - ID_B1 SINE B4 -6 218 6 2 1734 271 185 0 18 chr4 150703064 150703119 -4927001 - ID_B1 SINE B4 -8 216 163 2 1734 2392 85 35 0 chr4 150704285 150704601 -4925519 + ORR1A2 LTR MaLR 1 327 0 2 1734 248 77 26 0 chr4 150704641 150704680 -4925440 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2 1734 267 233 54 54 chr4 150704704 150704841 -4925279 - MIR SINE MIR -33 229 96 2 1734 1711 26 0 0 chr4 150705862 150706054 -4924066 - B2_Mm1a SINE B2 0 193 2 2 1734 1117 241 84 3 chr4 150707138 150707425 -4922695 + MTEb LTR MaLR 44 353 -26 2 1734 668 259 7 0 chr4 150707791 150707930 -4922190 + RSINE1 SINE B4 2 141 -24 2 1734 420 82 0 0 chr4 150707930 150707991 -4922129 + (CATA)n Simple_repeat Simple_repeat 1 61 0 2 1734 190 204 33 22 chr4 150708105 150708195 -4921925 + (TATG)n Simple_repeat Simple_repeat 1 91 0 2 1734 426 221 42 21 chr4 150708233 150708376 -4921744 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 1734 241 209 18 47 chr4 150708379 150708550 -4921570 + (TATATG)n Simple_repeat Simple_repeat 3 168 0 2 1734 260 330 16 43 chr4 150708553 150708737 -4921383 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1734 416 282 104 24 chr4 150710384 150710635 -4919485 + B4A SINE B4 33 283 -9 2 1734 235 374 38 15 chr4 150710793 150710926 -4919194 + L1MC LINE L1 5593 5728 -2154 2 1734 303 320 136 83 chr4 150711225 150711706 -4918414 + MLT1E2 LTR MaLR 4 466 -39 2 1734 186 213 21 0 chr4 150712018 150712065 -4918055 - L2 LINE L2 -2908 511 464 2 1734 274 325 129 10 chr4 150712526 150712719 -4917401 + L2b LINE L2 3053 3268 -107 2 1734 723 165 0 0 chr4 150712759 150712892 -4917228 + (TTCA)n Simple_repeat Simple_repeat 2 134 0 2 1734 189 275 87 0 chr4 150712892 150712961 -4917159 - L2a LINE L2 0 3426 3352 2 1734 246 62 0 0 chr4 150713517 150713549 -4916571 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1734 192 250 176 37 chr4 150713761 150713869 -4916251 - MIR SINE MIR -63 145 23 2 1734 881 336 70 62 chr4 150714047 150714751 -4915369 + L1MD LINE L1 4409 5126 -1020 2 1734 256 48 23 23 chr4 150714751 150714794 -4915326 + (CCA)n Simple_repeat Simple_repeat 1 43 0 2 1734 881 336 70 62 chr4 150714794 150714883 -4915237 + L1MD LINE L1 5127 5209 -937 2 1734 298 318 12 0 chr4 150714986 150715071 -4915049 + B4A SINE B4 1 86 -206 2 1734 1052 261 70 79 chr4 150715093 150715551 -4914569 + RMER13A LTR ERVK 1 454 -406 2 1734 513 210 39 39 chr4 150715830 150715959 -4914161 + B4A SINE B4 105 233 -59 2 1734 738 342 29 18 chr4 150715964 150716244 -4913876 + B4A SINE B4 8 290 -2 2 1734 432 0 0 0 chr4 150716258 150716306 -4913814 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1734 261 0 0 0 chr4 150716306 150716334 -4913786 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1734 286 200 0 32 chr4 150716349 150716411 -4913709 + B4A SINE B4 215 274 -18 2 1734 642 109 0 25 chr4 150716413 150716535 -4913585 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 1734 560 305 141 16 chr4 150716545 150716908 -4913212 + L1M5 LINE L1 5292 5699 -480 2 1734 1083 261 73 33 chr4 150717161 150717530 -4912590 + MTD LTR MaLR 23 403 -16 2 1734 204 281 0 17 chr4 150717759 150717817 -4912303 + GA-rich Low_complexity Low_complexity 1 57 0 2 1734 441 285 58 34 chr4 150718572 150718779 -4911341 - RMER15 LTR ERVL -15 560 349 2 1734 269 275 277 21 chr4 150719167 150719308 -4910812 - MIRb SINE MIR -62 206 30 2 1734 939 261 9 0 chr4 150719691 150719909 -4910211 - ID_B1 SINE B4 -4 220 1 2 1734 480 283 36 0 chr4 150719930 150720068 -4910052 + RSINE1 SINE B4 19 161 -4 2 1734 243 152 0 0 chr4 150721744 150721790 -4908330 + (CACCAT)n Simple_repeat Simple_repeat 6 51 0 2 1734 980 293 110 14 chr4 150722050 150722396 -4907724 - MTE2b LTR MaLR 0 379 1 2 1734 495 229 0 33 chr4 150723470 150723651 -4906469 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1734 361 198 0 21 chr4 150723685 150723778 -4906342 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1734 629 272 67 43 chr4 150723780 150724039 -4906081 - RSINE1 SINE B4 -1 291 6 2 1734 397 256 50 33 chr4 150724042 150724163 -4905957 - B4A SINE B4 -64 228 106 2 1734 267 227 0 0 chr4 150724310 150724376 -4905744 + (CATG)n Simple_repeat Simple_repeat 2 67 0 2 1734 612 140 38 6 chr4 150724369 150724527 -4905593 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 2 1734 486 268 44 28 chr4 150725551 150725783 -4904337 - L1MB5 LINE L1 -3 6171 5927 2 1734 383 219 421 19 chr4 150725798 150726062 -4904058 + ORR1D2 LTR MaLR 1 370 0 2 1734 683 279 66 33 chr4 150726450 150726661 -4903459 - MER58A DNA MER1_type 0 224 7 2 1734 192 176 0 0 chr4 150726989 150727023 -4903097 + L2b LINE L2 3342 3375 0 2 1734 1308 146 9 26 chr4 150727207 150727433 -4902687 + URR1A DNA MER1_type 5 226 0 2 1734 189 0 0 0 chr4 150731470 150731491 -4898629 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1734 1855 167 118 8 chr4 150732192 150732566 -4897554 - Lx5 LINE L1 -1 7049 6635 2 216 829 301 55 4 chr4 150732566 150732839 -4897281 + B4A SINE B4 6 292 0 2 1735 378 216 18 0 chr4 150732839 150733010 -4897110 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1735 579 199 8 12 chr4 150733028 150733294 -4896826 + (CA)n Simple_repeat Simple_repeat 1 264 0 2 1735 341 198 9 0 chr4 150733332 150733443 -4896677 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1735 324 243 95 19 chr4 150733445 150733550 -4896570 + HAL1-3A_ME LINE L1 1976 2088 -770 2 1735 289 323 30 8 chr4 150733563 150733694 -4896426 + Kanga2_a DNA Tc2 603 736 -152 2 1735 183 42 0 0 chr4 150733700 150733724 -4896396 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1735 651 233 15 0 chr4 150734736 150734869 -4895251 - RSINE1 SINE B4 -29 136 2 2 1735 3278 41 23 3 chr4 150738026 150738418 -4891702 - MTB LTR MaLR 0 400 1 2 1735 737 262 78 50 chr4 150740675 150741013 -4889107 + MTE2b LTR MaLR 1 348 -11 2 1735 557 201 50 27 chr4 150741757 150741899 -4888221 + MLT1B LTR MaLR 8 151 -239 2 1735 261 0 0 0 chr4 150741914 150741943 -4888177 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1735 670 240 123 0 chr4 150743591 150743762 -4886358 - B3A SINE B2 -6 192 1 2 1735 313 329 200 24 chr4 150743859 150744024 -4886096 - B3A SINE B2 -3 195 2 2 1735 225 301 211 10 chr4 150744160 150744264 -4885856 - MIR SINE MIR -123 139 15 2 1735 247 360 83 19 chr4 150744630 150744786 -4885334 - MIRb SINE MIR -72 196 31 2 1735 375 191 490 0 chr4 150744823 150744970 -4885150 - ID_B1 SINE B4 -4 220 2 2 1735 528 65 0 0 chr4 150747079 150747156 -4882964 + (CAGGT)n Simple_repeat Simple_repeat 4 80 0 2 1735 480 18 0 0 chr4 150747267 150747324 -4882796 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1735 357 186 0 0 chr4 150747948 150748018 -4882102 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1735 252 0 0 0 chr4 150748342 150748370 -4881750 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1735 414 339 69 25 chr4 150748392 150748755 -4881365 + MLT1B LTR MaLR 74 467 0 2 1735 418 283 57 17 chr4 150748902 150749078 -4881042 + MIRb SINE MIR 52 234 -34 2 1735 1075 90 0 34 chr4 150749109 150749258 -4880862 + B1_Mus1 SINE Alu 4 147 -1 2 1735 186 43 0 0 chr4 150749267 150749290 -4880830 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1735 249 159 0 0 chr4 150749287 150749331 -4880789 + A-rich Low_complexity Low_complexity 1 44 0 3 1735 250 176 39 0 chr4 150749605 150749656 -4880464 + MLT1C LTR MaLR 5 57 -333 3 1735 531 45 0 0 chr4 150749691 150749757 -4880363 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 3 1735 985 235 77 101 chr4 150749853 150750151 -4879969 - B4 SINE B4 0 292 2 3 1735 374 323 135 38 chr4 150751585 150751955 -4878165 + MLT1C LTR MaLR 45 450 -17 3 1735 1304 262 57 31 chr4 150752191 150752207 -4877913 - MTD LTR MaLR -14 405 390 3 1735 195 42 0 0 chr4 150752207 150752231 -4877889 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1735 1304 262 57 31 chr4 150752231 150752600 -4877520 - MTD LTR MaLR -30 389 11 3 1735 829 304 0 9 chr4 150752678 150752900 -4877220 - ID_B1 SINE B4 -2 222 3 3 1735 297 266 40 50 chr4 150753422 150753521 -4876599 + B1F SINE Alu 6 103 -46 3 1735 189 0 0 0 chr4 150753641 150753662 -4876458 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1735 644 279 0 0 chr4 150753962 150754102 -4876018 - RSINE1 SINE B4 -24 141 2 3 1735 863 296 112 32 chr4 150754888 150755202 -4874918 - ORR1D2 LTR MaLR -31 339 1 3 1735 424 314 64 6 chr4 150755322 150755456 -4874664 + RMER30 DNA MER1_type 2 144 -58 3 1735 2662 125 20 16 chr4 150755456 150755921 -4874199 - MTB_Mm LTR MaLR -2 405 9 3 1735 657 286 92 72 chr4 150755924 150756229 -4873891 - MTE2a LTR MaLR -59 320 10 3 1735 195 129 0 0 chr4 150758033 150758064 -4872056 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 3 1735 234 292 0 15 chr4 150758074 150758140 -4871980 + GA-rich Low_complexity Low_complexity 2 66 0 3 1735 466 305 66 35 chr4 150758410 150758607 -4871513 + MER58A DNA MER1_type 22 224 0 3 1735 650 278 94 10 chr4 150759771 150760053 -4870067 - MLT2C2 LTR ERVL -40 527 125 3 1735 183 80 0 0 chr4 150760645 150760670 -4869450 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 3 1735 225 295 20 0 chr4 150764247 150764396 -4865724 + (TG)n Simple_repeat Simple_repeat 1 152 0 3 1735 759 230 11 62 chr4 150764422 150764598 -4865522 - B4A SINE B4 -1 291 125 3 1735 312 27 0 0 chr4 150764751 150764788 -4865332 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 1735 222 62 0 0 chr4 150764870 150764902 -4865218 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1735 846 66 197 0 chr4 150764905 150765027 -4865093 - B1_Mus1 SINE Alu 0 148 3 3 1735 333 295 62 9 chr4 150765357 150765470 -4864650 + Charlie1a DNA MER1_type 1317 1435 -20 3 1735 288 0 0 0 chr4 150765648 150765680 -4864440 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1735 320 280 0 7 chr4 150766162 150766313 -4863807 + (CA)n Simple_repeat Simple_repeat 2 151 0 3 1735 869 319 29 11 chr4 150767195 150767471 -4862649 + B4A SINE B4 12 292 0 3 1735 222 280 0 0 chr4 150767490 150767565 -4862555 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1735 419 233 200 0 chr4 150767708 150767828 -4862292 + B1F SINE Alu 6 149 0 3 1735 290 254 176 56 chr4 150767828 150767849 -4862271 + B4A SINE B4 91 248 -44 3 1735 357 212 0 0 chr4 150768010 150768076 -4862044 + ID2 SINE ID 17 82 -1 3 1735 385 231 87 0 chr4 150768093 150768197 -4861923 + B3A SINE B2 1 113 -85 3 1735 365 0 0 22 chr4 150768197 150768243 -4861877 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1735 367 268 116 60 chr4 150768377 150768697 -4861423 + L1M4b LINE L1 2154 2604 -4422 3 1735 798 288 41 5 chr4 150768885 150769105 -4861015 + B4A SINE B4 63 290 -2 3 1735 279 0 0 0 chr4 150769716 150769747 -4860373 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1735 497 230 6 0 chr4 150771290 150771468 -4858652 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1735 585 248 71 0 chr4 150771764 150771905 -4858215 + RSINE1 SINE B4 11 161 -4 3 1735 1144 51 7 0 chr4 150772139 150772276 -4857844 + B1_Mm SINE Alu 1 138 -9 3 1735 188 0 74 0 chr4 150772276 150772303 -4857817 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1735 281 365 97 24 chr4 150773548 150773887 -4856233 + L1M5 LINE L1 4071 4434 -1712 3 1735 240 350 43 7 chr4 150774433 150774574 -4855546 + RMER15 LTR ERVL 419 564 -11 3 1735 220 215 44 44 chr4 150774887 150774955 -4855165 - L2b LINE L2 -19 3356 3289 3 1735 546 272 76 16 chr4 150776705 150776895 -4853225 + MTE2a LTR MaLR 19 253 -168 3 1735 290 298 12 0 chr4 150776895 150776979 -4853141 + (CACG)n Simple_repeat Simple_repeat 2 86 0 3 1735 502 244 96 56 chr4 150776987 150777165 -4852955 + MTE2a LTR MaLR 194 378 -1 3 1735 669 284 121 118 chr4 150777447 150777810 -4852310 + MTE2b LTR MaLR 3 366 -13 3 1735 225 0 0 0 chr4 150778529 150778554 -4851566 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1735 186 43 0 0 chr4 150779497 150779520 -4850600 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1735 451 330 65 50 chr4 150780049 150780095 -4850025 + L1MD LINE L1 4457 4503 -1643 3 1735 384 22 0 0 chr4 150780095 150780140 -4849980 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1735 451 330 65 50 chr4 150780140 150780572 -4849548 + L1MD LINE L1 4504 4942 -1204 3 1735 1255 168 35 0 chr4 150780722 150780925 -4849195 + B3 SINE B2 1 210 -6 3 1735 211 303 0 43 chr4 150780984 150781077 -4849043 + (ATGTG)n Simple_repeat Simple_repeat 2 90 0 3 1735 763 230 117 5 chr4 150781315 150781503 -4848617 + B3 SINE B2 2 210 -6 3 1735 346 228 34 102 chr4 150781523 150781611 -4848509 + PB1D7 SINE Alu 9 90 -30 3 1735 2673 141 24 0 chr4 150781611 150782022 -4848098 - MTC LTR MaLR 0 421 1 3 1735 341 274 24 145 chr4 150782022 150782057 -4848063 + PB1D10 SINE Alu 88 117 0 3 1735 258 225 0 0 chr4 150782095 150782175 -4847945 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1735 3295 29 40 0 chr4 150783795 150784172 -4845948 + MTA_Mm LTR MaLR 1 392 -4 3 1735 21 36 0 0 chr4 150784508 150784536 -4845584 + AT_rich Low_complexity Low_complexity 1 28 0 3 1735 245 197 15 0 chr4 150786789 150786855 -4843265 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1735 303 93 0 0 chr4 150786992 150787035 -4843085 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1735 323 186 10 0 chr4 150787037 150787134 -4842986 + GA-rich Low_complexity Low_complexity 2 99 0 3 1735 528 254 25 0 chr4 150787912 150788034 -4842086 + B3A SINE B2 1 125 -73 3 1735 269 284 15 0 chr4 150788318 150788385 -4841735 - BC1_Mm scRNA scRNA -71 81 14 3 1735 431 325 177 24 chr4 150788458 150788909 -4841211 + L2 LINE L2 2063 2582 -837 3 1735 947 223 56 0 chr4 150788942 150789139 -4840981 - B3 SINE B2 -4 212 5 3 1735 231 310 54 54 chr4 150790117 150790209 -4839911 - RLTR18 LTR ERVK -320 296 205 3 1735 725 258 32 21 chr4 150790242 150790502 -4839618 + L1MA5A LINE L1 5634 5930 -370 3 1735 294 29 0 0 chr4 150790502 150790537 -4839583 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1735 697 287 78 32 chr4 150790537 150790646 -4839474 + L1MA5A LINE L1 5929 6041 -318 3 1735 579 198 0 0 chr4 150793813 150793914 -4836206 - ID_B1 SINE B4 -9 215 115 3 1735 366 23 0 0 chr4 150795381 150795424 -4834696 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1735 231 36 0 0 chr4 150796101 150796129 -4833991 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1735 573 15 0 0 chr4 150796129 150796194 -4833926 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1735 241 320 16 47 chr4 150796213 150796341 -4833779 + Lx9 LINE L1 7387 7510 -134 3 1735 216 246 0 0 chr4 150796346 150796415 -4833705 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1735 287 258 101 0 chr4 150797751 150797840 -4832280 - B3A SINE B2 -6 192 95 3 1735 303 49 0 0 chr4 150798435 150798476 -4831644 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1735 271 328 98 41 chr4 150799311 150799565 -4830555 + L2c LINE L2 2804 3086 -301 3 1735 186 312 0 0 chr4 150799906 150799954 -4830166 + L4 LINE RTE 392 439 -1590 3 1735 333 264 31 71 chr4 150800151 150800249 -4829871 - B3A SINE B2 -73 125 32 3 1735 468 0 0 0 chr4 150800420 150800472 -4829648 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1735 378 238 109 45 chr4 150800529 150800588 -4829532 + RSINE1 SINE B4 24 94 -71 3 1735 189 0 0 0 chr4 150800588 150800609 -4829511 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1735 378 238 109 45 chr4 150800609 150800659 -4829461 + RSINE1 SINE B4 95 139 -26 3 1735 364 310 54 19 chr4 150800751 150800847 -4829273 - L1M4b LINE L1 -1375 5631 5534 3 1735 3530 23 5 0 chr4 150800847 150801241 -4828879 - MTA_Mm LTR MaLR 0 396 1 3 1735 364 310 54 19 chr4 150801241 150801404 -4828716 - L1M4b LINE L1 -1473 5533 5363 3 1735 478 345 47 47 chr4 150801544 150801866 -4828254 - L1M4b LINE L1 -1602 5404 5083 3 1735 223 186 0 23 chr4 150802069 150802113 -4828007 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1735 242 322 42 34 chr4 150802113 150802138 -4827982 - RMER12 LTR ERVK -466 856 833 3 1735 579 29 0 0 chr4 150802138 150802207 -4827913 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1735 242 322 42 34 chr4 150802207 150802300 -4827820 - RMER12 LTR ERVK -490 832 737 3 1735 277 313 134 22 chr4 150802275 150802409 -4827711 - B4 SINE B4 -17 275 127 3 1735 826 274 104 21 chr4 150802418 150802698 -4827422 - ORR1D2 LTR MaLR -1 369 67 3 1735 424 221 78 8 chr4 150802674 150802802 -4827318 - B4A SINE B4 -153 139 3 3 1735 1315 313 66 27 chr4 150802804 150803594 -4826526 - L1M4b LINE L1 -2137 4869 4049 3 1735 1106 274 112 14 chr4 150803757 150804113 -4826007 + MTD LTR MaLR 2 392 -27 3 1735 185 83 0 27 chr4 150804355 150804392 -4825728 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 3 1735 678 131 0 36 chr4 150804824 150804935 -4825185 - B1_Mur1 SINE Alu -1 148 42 3 1735 890 146 0 31 chr4 150804935 150805197 -4824923 + (TCTCTG)n Simple_repeat Simple_repeat 1 253 0 3 1735 614 229 120 32 chr4 150805432 150805456 -4824664 - B3A SINE B2 -24 174 153 3 1735 555 90 0 0 chr4 150805456 150805534 -4824586 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1735 614 229 120 32 chr4 150805534 150805667 -4824453 - B3A SINE B2 -46 152 3 3 1735 1009 39 8 0 chr4 150806021 150806148 -4823972 + B1_Mus1 SINE Alu 19 146 -2 3 1735 834 99 28 7 chr4 150806167 150806310 -4823810 + (GGAAA)n Simple_repeat Simple_repeat 3 148 0 3 1735 339 359 27 19 chr4 150806404 150806615 -4823505 - L1M4b LINE L1 -4878 2130 1912 3 1735 565 172 61 0 chr4 150806621 150806720 -4823400 - PB1D10 SINE Alu -8 109 5 3 1735 261 261 144 72 chr4 150806982 150807135 -4822985 + MLT1E1 LTR MaLR 25 188 -372 4 1735 454 294 39 39 chr4 150807153 150807410 -4822710 + MLT1E1 LTR MaLR 254 597 -57 4 1735 216 0 0 0 chr4 150807823 150807847 -4822273 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1735 863 295 104 18 chr4 150807938 150808266 -4821854 - ORR1E LTR MaLR -2 357 2 4 1735 198 0 0 0 chr4 150808368 150808390 -4821730 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1735 231 273 76 57 chr4 150809352 150809457 -4820663 - MIRb SINE MIR -115 153 47 4 1735 195 270 79 0 chr4 150809879 150809942 -4820178 + L2b LINE L2 3308 3375 0 4 1735 234 257 72 54 chr4 150810774 150810885 -4819235 + Lx8 LINE L1 7361 7473 0 4 1735 312 27 0 0 chr4 150810914 150810951 -4819169 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1735 808 304 41 38 chr4 150810976 150811267 -4818853 - B4 SINE B4 0 292 1 4 1735 22 0 0 0 chr4 150811920 150811942 -4818178 + AT_rich Low_complexity Low_complexity 1 22 0 4 1735 742 315 99 4 chr4 150813792 150814044 -4816076 + B4A SINE B4 13 288 -4 4 1735 318 67 0 0 chr4 150814077 150814122 -4815998 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1735 851 213 111 21 chr4 150814168 150814369 -4815751 - B3 SINE B2 0 216 20 4 1735 1513 186 108 19 chr4 150814922 150815337 -4814783 - ORR1B1 LTR MaLR -8 386 1 4 1735 1051 199 215 17 chr4 150815349 150815651 -4814469 + ORR1D1 LTR MaLR 9 370 -4 4 1735 530 304 120 69 chr4 150815933 150816209 -4813911 + B4A SINE B4 3 292 0 4 1735 25 31 0 0 chr4 150816580 150816612 -4813508 + AT_rich Low_complexity Low_complexity 1 32 0 4 1735 522 295 51 67 chr4 150817164 150817342 -4812778 + B4A SINE B4 1 175 -117 4 1735 459 0 0 0 chr4 150817366 150817417 -4812703 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1735 479 324 66 6 chr4 150817713 150817895 -4812225 + MER58A DNA MER1_type 1 193 -31 4 1735 601 279 188 12 chr4 150817895 150818137 -4811983 + B4 SINE B4 2 286 -6 4 1735 553 264 99 23 chr4 150818627 150818798 -4811322 - B3 SINE B2 -1 215 32 4 1735 189 0 0 0 chr4 150819498 150819519 -4810601 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1735 931 266 52 44 chr4 150820189 150820460 -4809660 - B4A SINE B4 -18 274 2 4 1735 223 245 19 0 chr4 150820485 150820538 -4809582 + CT-rich Low_complexity Low_complexity 1 54 0 4 1735 682 242 35 56 chr4 150820710 150820907 -4809213 + B3A SINE B2 4 196 -2 4 1735 431 283 7 106 chr4 150820933 150821075 -4809045 + B4A SINE B4 37 164 -128 4 1735 403 337 62 6 chr4 150822393 150822572 -4807548 + RMER15 LTR ERVL 372 560 -15 4 1735 2435 191 22 24 chr4 150822861 150823356 -4806764 + RLTR16 LTR ERVK 11 504 -1 4 1735 263 259 134 1 chr4 150824842 150824976 -4805144 + L1MD LINE L1 5504 5654 -540 4 1735 393 22 0 0 chr4 150827850 150827896 -4802224 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1735 486 286 178 31 chr4 150828316 150828507 -4801613 + ID_B1 SINE B4 2 220 -4 4 1735 432 37 0 0 chr4 150828824 150828878 -4801242 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1735 1462 247 53 0 chr4 150831497 150831837 -4798283 + ORR1D2 LTR MaLR 1 358 -12 4 1735 593 90 27 9 chr4 150831843 150831955 -4798165 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 4 1735 375 78 0 0 chr4 150831955 150832005 -4798115 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1735 24 53 0 0 chr4 150832270 150832308 -4797812 + AT_rich Low_complexity Low_complexity 1 38 0 4 1735 766 259 67 0 chr4 150832313 150832506 -4797614 + B3 SINE B2 1 206 -10 4 1735 214 179 26 118 chr4 150832564 150832584 -4797536 + B4 SINE B4 72 84 -208 4 1735 315 284 11 22 chr4 150832584 150832674 -4797446 + PB1D10 SINE Alu 1 89 -28 4 1735 700 280 125 50 chr4 150832952 150833835 -4796285 - L1M4 LINE L1 -594 5584 4600 4 1735 714 222 52 47 chr4 150833835 150834048 -4796072 - B3 SINE B2 -1 215 2 4 1735 655 315 96 81 chr4 150834048 150834364 -4795756 - L1M4 LINE L1 -1547 4599 4304 4 1735 358 256 12 24 chr4 150834367 150834451 -4795669 + MTE2b LTR MaLR 16 98 -281 4 1735 254 294 39 128 chr4 150834536 150834692 -4795428 + RSINE1 SINE B4 23 164 -1 4 1735 569 320 25 25 chr4 150834724 150834926 -4795194 + MTE2b LTR MaLR 165 366 -13 4 1735 330 312 45 22 chr4 150834964 150835187 -4794933 - L1MD LINE L1 -1867 4279 4052 4 1735 328 65 31 31 chr4 150835199 150835263 -4794857 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 4 1735 436 222 0 0 chr4 150836227 150836308 -4793812 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1735 456 266 0 0 chr4 150836323 150836492 -4793628 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1735 200 184 20 0 chr4 150836517 150836566 -4793554 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 4 1735 330 326 88 44 chr4 150836633 150836883 -4793237 + L1MC5 LINE L1 7585 7845 -116 4 1735 601 278 89 59 chr4 150837302 150837573 -4792547 + B4A SINE B4 4 282 -10 4 1735 297 0 0 0 chr4 150837580 150837613 -4792507 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1735 189 0 0 0 chr4 150837875 150837896 -4792224 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1735 183 114 56 28 chr4 150838620 150838656 -4791464 - MIRc SINE MIR -168 100 64 4 1735 185 319 0 0 chr4 150839980 150840027 -4790093 - L2a LINE L2 -4 3422 3376 4 1735 180 0 0 0 chr4 150842420 150842440 -4787680 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1735 668 174 14 0 chr4 150845229 150845521 -4784599 + (TG)n Simple_repeat Simple_repeat 1 296 0 4 1735 1246 224 51 8 chr4 150845539 150845795 -4784325 - B4A SINE B4 -8 284 18 4 1735 181 179 51 0 chr4 150847371 150847410 -4782710 + L2c LINE L2 3123 3163 -224 4 1735 227 347 0 0 chr4 150847498 150847570 -4782550 + (CATG)n Simple_repeat Simple_repeat 1 72 0 4 1735 378 0 0 0 chr4 150848750 150848792 -4781328 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1735 1031 219 24 0 chr4 150849836 150850046 -4780074 - B3 SINE B2 0 216 2 4 1735 582 240 218 10 chr4 150850371 150850577 -4779543 + RMER15 LTR ERVL 275 523 -52 4 1735 1336 319 104 87 chr4 150850911 150851285 -4778835 + RMER15-int LTR ERVL 210 605 -4394 4 1735 720 0 0 0 chr4 150851285 150851365 -4778755 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1735 1336 319 104 87 chr4 150851365 150852065 -4778055 + RMER15-int LTR ERVL 606 1302 -3697 4 1735 1027 236 139 34 chr4 150852072 150852511 -4777609 + Lx8 LINE L1 6987 7471 -2 4 1735 334 232 71 40 chr4 150852526 150852542 -4777578 + RMER15-int LTR ERVL 1284 1296 -3703 4 1735 1240 92 47 26 chr4 150852542 150852732 -4777388 + B2_Mm2 SINE B2 2 195 0 4 1735 334 232 71 40 chr4 150852732 150852814 -4777306 + RMER15-int LTR ERVL 1297 1385 -3614 4 1735 377 271 144 6 chr4 150852844 150853004 -4777116 + RMER15-int LTR ERVL 1440 1621 -3378 4 1735 620 306 131 8 chr4 150853351 150853618 -4776502 + RMER15 LTR ERVL 275 574 -1 4 1735 202 273 0 0 chr4 150854067 150854111 -4776009 + CT-rich Low_complexity Low_complexity 2 45 0 4 1735 541 279 0 8 chr4 150854162 150854285 -4775835 - B3A SINE B2 -76 122 1 4 1735 378 0 0 0 chr4 150854568 150854610 -4775510 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1735 258 261 31 0 chr4 150855183 150855248 -4774872 - B3A SINE B2 -8 190 124 4 1735 430 314 52 28 chr4 150855336 150855588 -4774532 + L1ME2z LINE L1 6052 6309 -135 4 1735 342 194 0 0 chr4 150855590 150855662 -4774458 + (TGGG)n Simple_repeat Simple_repeat 2 73 0 4 1735 725 256 0 0 chr4 150855692 150855829 -4774291 + B3A SINE B2 1 137 -61 4 1735 423 0 0 0 chr4 150855847 150855894 -4774226 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1735 468 0 0 0 chr4 150855895 150855947 -4774173 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1735 760 266 58 31 chr4 150856018 150856344 -4773776 + L1MC4 LINE L1 7033 7367 -675 4 1735 521 234 19 0 chr4 150856510 150856617 -4773503 + B3 SINE B2 1 109 -107 4 1735 351 0 0 0 chr4 150856617 150856656 -4773464 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1735 664 311 52 60 chr4 150856669 150856919 -4773201 + B4 SINE B4 4 251 -41 4 1735 213 256 0 0 chr4 150857009 150857091 -4773029 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1735 324 309 0 31 chr4 150857102 150857232 -4772888 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 4 1735 186 71 0 0 chr4 150857233 150857261 -4772859 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 4 1735 22 70 0 0 chr4 150857335 150857378 -4772742 + AT_rich Low_complexity Low_complexity 1 43 0 4 1735 222 37 0 0 chr4 150858188 150858215 -4771905 + (CCCCAG)n Simple_repeat Simple_repeat 4 30 0 4 1735 1334 184 64 8 chr4 150858531 150858861 -4771259 - MTD LTR MaLR -31 390 2 4 1735 279 0 0 0 chr4 150861145 150861176 -4768944 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1735 445 325 49 40 chr4 150861176 150861596 -4768524 + L1MB8 LINE L1 2218 2413 -3733 4 1735 234 299 155 25 chr4 150861686 150861847 -4768273 + L1MB8 LINE L1 2427 2608 -3538 4 1735 248 289 33 50 chr4 150862115 150862235 -4767885 + L1M3 LINE L1 5783 5900 -289 4 1735 247 298 108 20 chr4 150862493 150862688 -4767432 + L1MB8 LINE L1 5255 5466 -718 4 1735 515 260 7 10 chr4 150862848 150863153 -4766967 + (CA)n Simple_repeat Simple_repeat 1 303 0 4 1735 272 262 0 10 chr4 150863200 150863304 -4766816 + (CA)n Simple_repeat Simple_repeat 1 103 0 4 1735 279 0 0 0 chr4 150863316 150863347 -4766773 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1735 1095 54 0 0 chr4 150863349 150863479 -4766641 - B1_Mm SINE Alu -17 130 1 4 1735 322 283 95 124 chr4 150863486 150863696 -4766424 + L1MB8 LINE L1 5943 6146 -32 4 216 1173 146 38 19 chr4 150863704 150863913 -4766207 + B3 SINE B2 3 215 -1 4 1736 509 312 118 35 chr4 150863979 150864470 -4765650 + L1MC4 LINE L1 7242 7773 -269 4 1736 291 54 0 0 chr4 150866036 150866073 -4764047 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 4 1736 291 123 41 66 chr4 150866085 150866207 -4763913 + (TAGA)n Simple_repeat Simple_repeat 3 121 0 4 1736 381 131 0 0 chr4 150866207 150866268 -4763852 + (CAGG)n Simple_repeat Simple_repeat 2 62 0 4 1736 543 31 0 0 chr4 150867500 150867565 -4762555 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1736 24 32 0 0 chr4 150868248 150868279 -4761841 + AT_rich Low_complexity Low_complexity 1 31 0 4 1736 538 232 134 5 chr4 150868618 150868804 -4761316 + ID_B1 SINE B4 1 210 -14 4 1736 1092 218 194 9 chr4 150868830 150869145 -4760975 + MTD LTR MaLR 47 419 0 4 1736 378 0 0 0 chr4 150869562 150869604 -4760516 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1736 21 36 0 0 chr4 150869923 150869951 -4760169 + AT_rich Low_complexity Low_complexity 1 28 0 5 1736 261 0 0 0 chr4 150870087 150870116 -4760004 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1736 960 308 11 33 chr4 150870162 150870437 -4759683 - B4 SINE B4 -2 290 22 5 1736 1273 201 172 6 chr4 150871095 150871415 -4758705 - MTEa LTR MaLR -5 374 2 5 1736 465 296 91 17 chr4 150872642 150872817 -4757303 + MIR SINE MIR 70 257 -5 5 1736 654 254 69 21 chr4 150873115 150873304 -4756816 - B3 SINE B2 -15 201 4 5 1736 984 230 23 3 chr4 150873313 150873514 -4756606 + B3 SINE B2 13 216 0 5 1736 783 312 128 3 chr4 150873542 150873838 -4756282 + RCHARR1 DNA MER1_type 31 363 -611 5 1736 502 271 166 0 chr4 150873851 150874002 -4756118 + B3A SINE B2 5 180 -18 5 1736 548 210 0 6 chr4 150874007 150874165 -4755955 + (CA)n Simple_repeat Simple_repeat 2 158 0 5 1736 2277 225 45 0 chr4 150874182 150874645 -4755475 + RCHARR1 DNA MER1_type 367 850 -124 5 1736 938 221 12 3 chr4 150874677 150874852 -4755268 + B3A SINE B2 1 170 -28 5 1736 182 105 26 0 chr4 150874852 150874890 -4755230 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1736 800 243 5 78 chr4 150874890 150874906 -4755214 + B3 SINE B2 165 178 -38 5 1736 226 262 170 80 chr4 150874927 150875039 -4755081 + RCHARR1 DNA MER1_type 853 974 0 5 1736 357 176 0 0 chr4 150875061 150875135 -4754985 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1736 404 338 72 7 chr4 150875265 150875417 -4754703 - RSINE1 SINE B4 -2 163 2 5 1736 865 314 116 9 chr4 150875758 150876198 -4753922 + Lx8 LINE L1 6727 7213 -260 5 1736 798 182 7 14 chr4 150876247 150876392 -4753728 - B1_Mur1 SINE Alu 0 149 6 5 1736 317 276 62 54 chr4 150876397 150876527 -4753593 + Lx8 LINE L1 7222 7352 -121 5 1736 773 299 86 9 chr4 150876835 150877068 -4753052 + B4 SINE B4 35 285 -7 5 1736 300 358 106 8 chr4 150877094 150877350 -4752770 + L1M5 LINE L1 5494 5774 -405 5 1736 255 61 0 0 chr4 150877552 150877585 -4752535 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1736 834 169 0 29 chr4 150877588 150877728 -4752392 - B1_Mus1 SINE Alu -12 136 1 5 1736 1060 186 10 25 chr4 150877871 150878069 -4752051 + B3 SINE B2 3 197 -19 5 1736 435 19 0 0 chr4 150878077 150878129 -4751991 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1736 450 0 0 0 chr4 150878129 150878178 -4751942 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1736 386 303 88 88 chr4 150878450 150878667 -4751453 - Charlie18a DNA MER1_type -4 338 122 5 1736 619 129 48 12 chr4 150880106 150880271 -4749849 + (CAGA)n Simple_repeat Simple_repeat 4 174 0 5 1736 438 354 97 43 chr4 150880343 150880806 -4749314 - L1MC4 LINE L1 -232 7810 7323 5 1736 401 203 178 15 chr4 150880974 150881109 -4749011 - L1MC4 LINE L1 -1155 6887 6731 5 1736 690 13 0 0 chr4 150881133 150881212 -4748908 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 1736 1136 251 80 58 chr4 150881406 150881804 -4748316 + MTD LTR MaLR 13 419 0 5 1736 449 226 33 50 chr4 150881804 150881924 -4748196 + B4 SINE B4 37 165 0 5 1736 403 194 19 0 chr4 150881926 150882034 -4748086 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 1736 252 313 78 26 chr4 150882250 150882404 -4747716 - L1MC4 LINE L1 -1714 6168 6007 5 1736 417 314 57 40 chr4 150882522 150882698 -4747422 - ID_B1 SINE B4 -21 203 25 5 1736 410 259 34 8 chr4 150882723 150882840 -4747280 - PB1D9 SINE Alu 0 120 1 5 1736 289 254 9 9 chr4 150882899 150883014 -4747106 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 1736 638 309 85 41 chr4 150883039 150883309 -4746811 - B4 SINE B4 -10 282 1 5 1736 327 375 21 35 chr4 150883629 150883770 -4746350 + Tigger5 DNA MER2_type 1 139 -2267 5 1736 276 293 0 0 chr4 150883812 150883870 -4746250 + Tigger5 DNA MER2_type 2328 2385 -21 5 1736 393 22 0 0 chr4 150884215 150884261 -4745859 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1736 584 150 31 0 chr4 150884348 150884475 -4745645 + CT-rich Low_complexity Low_complexity 2 132 0 5 1736 603 323 40 12 chr4 150884582 150884833 -4745287 - L1MC4 LINE L1 -2301 5581 5324 5 1736 252 317 12 36 chr4 150885131 150885298 -4744822 - L1MC4 LINE L1 -1098 5048 4886 5 1736 547 299 39 28 chr4 150885353 150885535 -4744585 - B3A SINE B2 -13 185 2 5 1736 470 364 61 39 chr4 150885574 150885854 -4744266 - L1M5 LINE L1 -1312 4834 4549 5 1736 580 231 17 106 chr4 150886054 150886233 -4743887 + RSINE1 SINE B4 3 165 0 5 1736 241 235 0 29 chr4 150886301 150886371 -4743749 + Lx8 LINE L1 6883 6950 -523 5 1736 261 0 0 0 chr4 150886374 150886403 -4743717 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1736 273 302 79 0 chr4 150886464 150886527 -4743593 - B4A SINE B4 -182 110 43 5 1736 315 359 138 50 chr4 150886687 150887145 -4742975 - L1M5 LINE L1 -2973 3173 2676 5 1736 433 208 13 0 chr4 150887273 150887350 -4742770 + RSINE1 SINE B4 19 96 -69 5 1736 558 0 0 0 chr4 150887442 150887504 -4742616 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1736 533 323 83 30 chr4 150888534 150888764 -4741356 + B4A SINE B4 2 243 -49 5 1736 265 292 136 15 chr4 150888793 150888925 -4741195 + RSINE1 SINE B4 2 149 -16 5 1736 1248 261 86 18 chr4 150888937 150889323 -4740797 + MTD LTR MaLR 6 417 -2 5 1736 259 286 25 38 chr4 150889342 150889422 -4740698 + B4A SINE B4 212 290 -2 5 1736 378 0 0 0 chr4 150889439 150889481 -4740639 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1736 261 0 0 0 chr4 150890354 150890383 -4739737 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1736 315 0 0 0 chr4 150890383 150890417 -4739703 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1736 1106 231 70 91 chr4 150890713 150891055 -4739065 + Lx6 LINE L1 7099 7433 -27 5 1736 315 0 0 0 chr4 150891057 150891092 -4739028 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1736 318 114 43 0 chr4 150891880 150891950 -4738170 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1736 271 270 133 48 chr4 150892012 150892117 -4738003 + ID_B1 SINE B4 103 216 -8 5 1736 479 278 80 14 chr4 150892134 150892369 -4737751 + B4 SINE B4 8 281 -11 5 1736 747 192 14 0 chr4 150892418 150892631 -4737489 + CT-rich Low_complexity Low_complexity 1 215 0 5 1736 180 0 0 0 chr4 150893049 150893069 -4737051 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1736 210 191 0 0 chr4 150893663 150893710 -4736410 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1736 449 255 133 20 chr4 150893710 150893906 -4736214 - B4A SINE B4 0 292 75 5 1736 186 43 0 0 chr4 150894988 150895011 -4735109 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1736 226 179 68 45 chr4 150895013 150895101 -4735019 - Lx4B LINE L1 -16 7042 6953 5 1736 228 333 115 45 chr4 150895093 150895250 -4734870 + L1M3 LINE L1 5728 5895 -288 5 1736 552 252 30 0 chr4 150895461 150895592 -4734528 + RSINE1 SINE B4 3 137 -28 5 1736 637 172 25 17 chr4 150895624 150895742 -4734378 + PB1D9 SINE Alu 1 119 -1 5 1736 669 229 0 0 chr4 150896105 150896349 -4733771 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 1736 342 303 261 13 chr4 150896349 150896583 -4733537 - B4 SINE B4 0 292 1 5 1736 980 190 81 197 chr4 150896930 150897337 -4732783 + ORR1D1 LTR MaLR 1 360 -14 5 1736 479 271 131 0 chr4 150897337 150897459 -4732661 + RSINE1 SINE B4 6 143 -22 5 1736 195 42 0 0 chr4 150897520 150897544 -4732576 + (CG)n Simple_repeat Simple_repeat 2 25 0 5 1736 243 0 0 0 chr4 150897544 150897570 -4732550 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1736 447 324 135 47 chr4 150897614 150897954 -4732166 + L1M5 LINE L1 2773 3142 -3004 5 1736 472 318 194 11 chr4 150898648 150899277 -4730843 + L1M5 LINE L1 3118 3861 -2285 5 1736 200 122 24 0 chr4 150899341 150899382 -4730738 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1736 818 263 19 9 chr4 150899391 150899602 -4730518 - B3 SINE B2 -2 214 2 5 1736 248 70 23 0 chr4 150899814 150899857 -4730263 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 5 1736 608 186 206 17 chr4 150899881 150900056 -4730064 - ID_B1 SINE B4 -15 209 2 5 1736 189 0 0 0 chr4 150900226 150900247 -4729873 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1736 547 209 0 0 chr4 150900478 150900583 -4729537 + PB1D7 SINE Alu 10 114 -6 5 1736 28 48 0 0 chr4 150900586 150900628 -4729492 + AT_rich Low_complexity Low_complexity 1 42 0 5 1736 1053 138 30 10 chr4 150900668 150900866 -4729254 - RLTR28 LTR ERVL -322 202 1 5 1736 374 336 0 0 chr4 150900895 150901065 -4729055 + (CATATA)n Simple_repeat Simple_repeat 1 170 0 5 1736 260 341 86 29 chr4 150901602 150901741 -4728379 - ID_B1 SINE B4 -14 210 64 5 1736 792 240 23 73 chr4 150901971 150902191 -4727929 + B3 SINE B2 1 209 -7 5 1736 506 228 0 0 chr4 150903013 150903114 -4727006 + MTEa LTR MaLR 8 108 -251 5 1736 2099 119 29 11 chr4 150903121 150903469 -4726651 + ORR1B1 LTR MaLR 41 394 0 5 1736 508 296 162 10 chr4 150903502 150903700 -4726420 + MTEa LTR MaLR 124 369 -10 5 1736 189 246 175 22 chr4 150903981 150904118 -4726002 + L2 LINE L2 327 484 -2935 5 1736 195 283 17 0 chr4 150904151 150904211 -4725909 + L2 LINE L2 556 616 -2803 5 1736 3395 59 2 2 chr4 150904357 150904764 -4725356 + MTB_Mm LTR MaLR 1 407 0 5 1736 442 289 60 70 chr4 150907000 150907207 -4722913 + L1M4 LINE L1 5515 5729 -451 5 1736 226 233 16 32 chr4 150907208 150907270 -4722850 + B1_Mus2 SINE Alu 1 61 -86 5 1736 1287 289 74 20 chr4 150907446 150908004 -4722116 - L1ME2z LINE L1 -7 6437 5854 5 1736 427 243 0 12 chr4 150908016 150908283 -4721837 + (TG)n Simple_repeat Simple_repeat 1 263 0 5 1736 397 350 21 36 chr4 150908283 150908336 -4721784 - B3A SINE B2 -2 196 145 5 1736 342 0 0 0 chr4 150908336 150908374 -4721746 + (TATG)n Simple_repeat Simple_repeat 1 38 0 5 1736 397 350 21 36 chr4 150908374 150908513 -4721607 - B3A SINE B2 -54 144 7 5 1736 322 356 50 43 chr4 150908557 150908836 -4721284 - L1ME2z LINE L1 -622 5822 5542 5 1736 1204 266 21 14 chr4 150909134 150909424 -4720696 + B4 SINE B4 1 292 0 5 1736 214 281 0 34 chr4 150910660 150910719 -4719401 + polypurine Low_complexity Low_complexity 3 59 0 5 1736 468 102 0 43 chr4 150910733 150910825 -4719295 + (GGGGA)n Simple_repeat Simple_repeat 4 91 0 5 1736 1023 284 113 24 chr4 150910922 150911294 -4718826 - MTD LTR MaLR 0 419 15 5 1736 676 257 87 103 chr4 150911342 150911720 -4718400 - MTEa LTR MaLR -4 375 4 5 1736 994 264 73 0 chr4 150912365 150912638 -4717482 + MTE2b LTR MaLR 26 318 -61 5 1736 480 288 0 31 chr4 150913775 150913904 -4716216 - ID_B1 SINE B4 -2 222 98 5 1736 191 36 36 0 chr4 150914657 150914685 -4715435 + (CCCCCA)n Simple_repeat Simple_repeat 3 31 0 6 1736 1476 183 72 3 chr4 150915133 150915423 -4714697 + ORR1B1 LTR MaLR 76 385 -9 6 1736 1050 98 29 0 chr4 150915725 150915898 -4714222 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 6 1736 405 0 0 0 chr4 150915900 150915945 -4714175 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 6 1736 261 139 0 0 chr4 150916423 150916466 -4713654 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 6 1736 2656 143 22 2 chr4 150917288 150917701 -4712419 + MTC LTR MaLR 1 421 0 6 1736 615 284 185 24 chr4 150917701 150917950 -4712170 + B4A SINE B4 4 292 0 6 1736 1051 261 9 69 chr4 150920772 150921089 -4709031 + ORR1D2 LTR MaLR 14 311 -59 6 1736 1207 67 11 6 chr4 150921090 150921269 -4708851 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1736 420 37 0 0 chr4 150921271 150921325 -4708795 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1736 994 95 0 0 chr4 150921325 150921462 -4708658 - B1_Mus1 SINE Alu -6 142 6 6 1736 416 239 0 103 chr4 150921354 150921480 -4708640 - MT2B LTR ERVL -337 264 152 6 1736 327 106 0 0 chr4 150921460 150921507 -4708613 + ORR1D2 LTR MaLR 324 370 0 6 1736 595 267 130 105 chr4 150922136 150922334 -4707786 - B4A SINE B4 0 292 98 6 1736 354 262 31 173 chr4 150922334 150922560 -4707560 - B3A SINE B2 0 198 5 6 1736 595 267 130 105 chr4 150922560 150922646 -4707474 - B4A SINE B4 -195 97 1 6 1736 428 91 0 15 chr4 150922657 150922724 -4707396 + (CCCCCT)n Simple_repeat Simple_repeat 5 70 0 6 1736 24 0 0 0 chr4 150923437 150923461 -4706659 + AT_rich Low_complexity Low_complexity 1 24 0 6 1736 396 105 40 0 chr4 150923914 150923990 -4706130 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 6 1736 255 340 96 14 chr4 150924928 150925074 -4705046 - L2 LINE L2 -1607 1812 1655 6 1736 340 341 21 55 chr4 150925253 150925489 -4704631 - L2 LINE L2 -2705 714 487 6 1736 1310 251 65 8 chr4 150925603 150925655 -4704465 - Lx7 LINE L1 -1716 5980 5926 6 1736 563 0 15 0 chr4 150925655 150925722 -4704398 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1736 1374 253 54 10 chr4 150925722 150926118 -4704002 - Lx7 LINE L1 -1771 5925 5514 6 1736 436 254 47 53 chr4 150926119 150926269 -4703851 - B1F SINE Alu 0 149 1 6 1736 582 322 117 21 chr4 150926513 150926992 -4703128 + L1M5 LINE L1 3382 3906 -2240 6 1736 256 268 92 23 chr4 150927073 150927203 -4702917 + L1MC4a LINE L1 7739 7877 -5 6 1736 344 248 52 142 chr4 150927268 150927423 -4702697 + MT2B LTR ERVL 138 278 -323 6 1736 790 146 0 77 chr4 150927302 150927458 -4702662 + B1_Mur1 SINE Alu 6 149 0 6 1736 357 359 94 47 chr4 150927995 150928293 -4701827 + L1ME1 LINE L1 5798 6109 -70 6 1736 2267 180 30 5 chr4 150928315 150928744 -4701376 + BGLII_B LTR ERVK 1 440 -1 6 1736 434 348 60 32 chr4 150929698 150929983 -4700137 - MER68 LTR ERVL -257 306 14 6 1736 544 295 128 30 chr4 150930233 150930499 -4699621 + B4A SINE B4 1 292 0 6 1736 473 71 0 14 chr4 150930509 150930580 -4699540 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1736 213 108 0 0 chr4 150931547 150931584 -4698536 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1736 189 0 0 0 chr4 150931584 150931605 -4698515 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1736 232 357 0 0 chr4 150931821 150931905 -4698215 + L2a LINE L2 3339 3422 -4 6 1736 483 220 0 0 chr4 150932488 150932579 -4697541 + RSINE1 SINE B4 3 93 -72 6 1736 1921 114 69 6 chr4 150932865 150933183 -4696937 + ORR1A1 LTR MaLR 1 338 -8 6 1736 251 291 8 60 chr4 150933875 150933992 -4696128 - Charlie12 DNA MER1_type -2701 172 62 6 1736 189 0 0 0 chr4 150934077 150934098 -4696022 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1736 339 310 92 41 chr4 150935013 150935208 -4694912 - L1M2 LINE L1 -570 5733 5529 6 1736 933 236 112 56 chr4 150935906 150936175 -4693945 + B4 SINE B4 9 292 0 6 1736 396 0 0 0 chr4 150936185 150936229 -4693891 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1736 663 108 0 0 chr4 150936618 150936720 -4693400 + (TG)n Simple_repeat Simple_repeat 2 103 0 6 1736 474 226 0 73 chr4 150936721 150936831 -4693289 - B3A SINE B2 -44 154 53 6 1736 234 154 192 0 chr4 150937238 150937290 -4692830 - B3A SINE B2 -135 63 2 6 1736 1166 281 10 10 chr4 150937359 150937650 -4692470 - B4A SINE B4 -1 291 1 6 1736 347 296 62 23 chr4 150937658 150937786 -4692334 - ID_B1 SINE B4 -1 223 91 6 1736 693 276 108 8 chr4 150939856 150940115 -4690005 + B4A SINE B4 2 286 -6 6 1736 369 282 19 0 chr4 150941432 150941535 -4688585 + PB1D10 SINE Alu 2 106 -11 6 1736 411 257 73 0 chr4 150942206 150942315 -4687805 + PB1D10 SINE Alu 1 117 0 6 1736 327 306 20 30 chr4 150942315 150942416 -4687704 + G-rich Low_complexity Low_complexity 3 102 0 6 1736 193 167 51 13 chr4 150942456 150942535 -4687585 + GA-rich Low_complexity Low_complexity 1 82 0 6 1736 252 0 0 0 chr4 150944132 150944160 -4685960 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1736 466 287 145 27 chr4 150944226 150944412 -4685708 - B4 SINE B4 -15 277 70 6 1736 393 309 85 45 chr4 150944723 150945005 -4685115 + MLT1F2 LTR MaLR 273 654 -26 6 1736 327 378 7 0 chr4 150945276 150945411 -4684709 + RSINE1 SINE B4 7 142 -23 6 1736 423 0 0 0 chr4 150945422 150945469 -4684651 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1736 450 0 0 0 chr4 150945469 150945518 -4684602 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1736 703 169 0 0 chr4 150945537 150945661 -4684459 + B1_Mur1 SINE Alu 24 147 -2 6 1736 321 200 0 0 chr4 150945670 150945725 -4684395 + B1F1 SINE Alu 68 122 -27 6 1736 210 162 0 0 chr4 150945742 150945779 -4684341 + A-rich Low_complexity Low_complexity 1 37 0 6 1736 741 192 10 29 chr4 150945784 150946101 -4684019 + GA-rich Low_complexity Low_complexity 1 310 0 6 1736 297 0 0 0 chr4 150946164 150946197 -4683923 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1736 211 239 202 11 chr4 150946337 150946426 -4683694 - MIR SINE MIR -125 137 32 6 1736 360 315 112 37 chr4 150946499 150946687 -4683433 - MER20 DNA MER1_type -17 202 1 6 1736 390 42 0 0 chr4 150947312 150947360 -4682760 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1736 273 271 0 27 chr4 150948049 150948132 -4681988 + MIR SINE MIR 22 103 -165 6 1736 242 162 13 39 chr4 150948178 150948255 -4681865 + CT-rich Low_complexity Low_complexity 2 76 0 6 1736 606 28 0 0 chr4 150949752 150949824 -4680296 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 1736 306 0 0 0 chr4 150949827 150949861 -4680259 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1736 896 257 37 18 chr4 150949925 150950198 -4679922 - B4A SINE B4 -14 278 1 6 1736 191 301 71 24 chr4 150950574 150950659 -4679461 + L2b LINE L2 3287 3375 0 6 1736 225 0 0 0 chr4 150951385 150951410 -4678710 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1736 333 325 6 17 chr4 150951414 150951586 -4678534 + (TATATG)n Simple_repeat Simple_repeat 4 173 0 6 1736 279 0 0 0 chr4 150951626 150951657 -4678463 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1736 667 227 7 14 chr4 150953145 150953442 -4676678 + (CATA)n Simple_repeat Simple_repeat 1 294 0 6 1736 574 183 28 17 chr4 150953460 150953638 -4676482 + (CATA)n Simple_repeat Simple_repeat 1 180 0 6 1736 278 216 23 0 chr4 150953664 150953752 -4676368 + (CATA)n Simple_repeat Simple_repeat 1 90 0 6 1736 257 311 14 0 chr4 150954985 150955059 -4675061 - L1MA7 LINE L1 -345 5946 5872 6 1736 300 91 0 0 chr4 150956993 150957037 -4673083 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1736 249 33 0 0 chr4 150957037 150957066 -4673054 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1736 568 271 0 15 chr4 150957083 150957214 -4672906 - B3A SINE B2 -67 131 3 6 1736 187 155 33 33 chr4 150958739 150958799 -4671321 + GA-rich Low_complexity Low_complexity 4 63 0 6 1736 1293 260 41 16 chr4 150959152 150959520 -4670600 + MTEb LTR MaLR 3 379 0 6 1736 462 157 0 0 chr4 150961041 150961143 -4668977 + GA-rich Low_complexity Low_complexity 2 103 0 6 1736 1848 122 24 60 chr4 150961791 150962123 -4667997 - ORR1A4 LTR MaLR -9 320 1 6 1736 427 330 6 17 chr4 150962570 150962746 -4667374 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 6 1736 204 226 0 0 chr4 150962833 150962895 -4667225 + (TGGG)n Simple_repeat Simple_repeat 1 62 0 6 1736 486 0 0 0 chr4 150962986 150963040 -4667080 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1736 1904 171 106 0 chr4 150963702 150964081 -4666039 + MTD LTR MaLR 1 419 0 6 1736 180 194 0 0 chr4 150964373 150964404 -4665716 - MIRm SINE MIR -13 263 233 6 1736 498 33 0 0 chr4 150964649 150964709 -4665411 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1736 685 251 39 22 chr4 150965063 150965242 -4664878 + B3A SINE B2 1 182 -16 6 1736 385 348 94 4 chr4 150965428 150965682 -4664438 + L1MB5 LINE L1 5839 6115 -59 6 1736 1071 143 0 22 chr4 150965699 150965878 -4664242 + URR1B DNA MER1_type 51 225 0 6 1736 479 291 15 55 chr4 150965878 150965899 -4664221 - CYRA11_Mm Unknown Y-chromosome -272 345 154 6 1736 369 62 0 0 chr4 150966583 150966631 -4663489 + (ATG)n Simple_repeat Simple_repeat 1 48 0 6 1736 239 254 57 41 chr4 150967110 150967233 -4662887 - Charlie5 DNA MER1_type -24 2600 2476 6 1736 370 303 8 8 chr4 150967768 150967901 -4662219 + (TATATG)n Simple_repeat Simple_repeat 4 136 0 6 1736 207 0 0 0 chr4 150967908 150967931 -4662189 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1736 295 351 24 0 chr4 150968002 150968170 -4661950 + (TG)n Simple_repeat Simple_repeat 2 173 0 6 1736 201 247 146 73 chr4 150969230 150969326 -4660794 - L2c LINE L2 -21 3366 3264 6 1736 281 264 154 21 chr4 150970494 150970620 -4659500 + LTR41 LTR ERVL 1 145 -623 6 1736 1241 216 18 59 chr4 150970620 150970906 -4659214 + B4 SINE B4 1 274 -18 6 1736 261 0 0 0 chr4 150970948 150970977 -4659143 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1736 196 0 114 0 chr4 150971115 150971159 -4658961 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 7 1736 701 79 40 0 chr4 150971437 150971563 -4658557 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 7 1736 330 26 0 0 chr4 150971575 150971614 -4658506 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1736 659 283 41 0 chr4 150971615 150971760 -4658360 - B3A SINE B2 -46 152 2 7 1736 232 232 35 18 chr4 150971849 150971906 -4658214 - B4A SINE B4 -49 243 186 7 1736 528 321 89 58 chr4 150972269 150972527 -4657593 - B4A SINE B4 -24 268 3 7 1736 335 278 7 95 chr4 150972546 150972693 -4657427 - L1ME1 LINE L1 -8 6171 6038 7 1736 513 0 0 0 chr4 150972748 150972805 -4657315 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7 1736 3218 40 0 5 chr4 150972806 150973208 -4656912 + MTB LTR MaLR 1 400 0 7 1736 338 39 39 0 chr4 150973235 150973286 -4656834 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 7 1736 412 276 123 27 chr4 150973286 150973506 -4656614 - L1MEc LINE L1 -4833 1567 1327 7 1736 232 275 12 70 chr4 150973506 150973524 -4656596 - ID_B1 SINE B4 -128 96 16 7 1736 241 269 0 15 chr4 150973524 150973592 -4656528 - ID4 SINE ID -1 82 16 7 1736 699 234 127 41 chr4 150973833 150974100 -4656020 + B4 SINE B4 3 292 0 7 1736 285 167 0 0 chr4 150974100 150974154 -4655966 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1736 233 258 32 0 chr4 150974525 150974587 -4655533 - L1MEc LINE L1 -6312 88 25 7 1736 604 332 33 41 chr4 150974892 150975134 -4654986 + LTR86A2 LTR ERVL 200 439 -69 7 1736 519 17 0 0 chr4 150975135 150975195 -4654925 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1736 261 0 0 0 chr4 150975852 150975881 -4654239 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1736 418 235 30 10 chr4 150975903 150976002 -4654118 - B3A SINE B2 -59 139 39 7 1736 231 272 67 19 chr4 150976165 150976270 -4653850 - B4A SINE B4 -182 110 1 7 1736 644 282 108 52 chr4 150976988 150977257 -4652863 + B4A SINE B4 1 284 -8 7 1736 404 95 27 0 chr4 150977336 150977410 -4652710 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 7 1736 402 21 0 0 chr4 150977492 150977539 -4652581 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1736 453 154 0 0 chr4 150977539 150977630 -4652490 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1736 465 19 0 0 chr4 150977663 150977717 -4652403 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1736 288 0 0 0 chr4 150977717 150977748 -4652372 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1736 613 279 142 24 chr4 150978108 150978354 -4651766 - B4 SINE B4 -16 276 2 7 1736 258 95 0 0 chr4 150978941 150978983 -4651137 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 7 1736 510 228 176 47 chr4 150979384 150979577 -4650543 - B4A SINE B4 -73 219 2 7 1736 264 316 21 10 chr4 150980227 150980323 -4649797 + MIR SINE MIR 133 229 -33 7 1736 1048 182 35 0 chr4 150980436 150980639 -4649481 + B3 SINE B2 4 213 -3 7 1736 468 220 4 26 chr4 150980778 150981013 -4649107 + (CA)n Simple_repeat Simple_repeat 1 229 0 7 1736 292 300 0 12 chr4 150981026 150981188 -4648932 + (CA)n Simple_repeat Simple_repeat 1 160 0 7 1736 324 324 72 57 chr4 150981256 150981449 -4648671 + L1ME4a LINE L1 5927 6122 -2 7 1736 762 275 109 14 chr4 150981875 150982159 -4647961 + ORR1E LTR MaLR 45 355 -4 7 1736 331 301 377 0 chr4 150982249 150982556 -4647564 + L2 LINE L2 2555 2976 -443 7 1736 23 0 0 0 chr4 150982866 150982889 -4647231 + AT_rich Low_complexity Low_complexity 1 23 0 7 1736 22 0 0 0 chr4 150983614 150983636 -4646484 + AT_rich Low_complexity Low_complexity 1 22 0 7 1736 24 0 0 0 chr4 150983666 150983690 -4646430 + AT_rich Low_complexity Low_complexity 1 24 0 7 1736 186 147 0 0 chr4 150985700 150985734 -4644386 + L2b LINE L2 3324 3357 -18 7 1736 968 270 30 4 chr4 150986843 150987114 -4643006 + B4A SINE B4 2 279 -13 7 1736 573 55 0 0 chr4 150987343 150987416 -4642704 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 7 1736 332 291 97 0 chr4 150987647 150987750 -4642370 - MTEb-int LTR MaLR -1467 113 1 7 1736 362 283 39 62 chr4 150987750 150987878 -4642242 - MTEb LTR MaLR 0 379 255 7 1736 804 260 99 63 chr4 150987881 150988214 -4641906 + ORR1E LTR MaLR 8 352 -7 7 1736 2664 310 62 36 chr4 150988225 150989267 -4640853 + ORR1E-int LTR MaLR 2 1070 -510 7 1736 1984 109 53 0 chr4 150989267 150989569 -4640551 + ORR1A3 LTR MaLR 1 318 -8 7 1736 1789 281 32 11 chr4 150989574 150990026 -4640094 + ORR1E-int LTR MaLR 1066 1527 -53 7 1736 714 302 48 44 chr4 150990026 150990341 -4639779 + ORR1E LTR MaLR 1 316 -43 7 1736 3154 48 5 2 chr4 150991483 150991882 -4638238 - MTB LTR MaLR 0 400 1 7 1736 360 0 0 0 chr4 150992024 150992064 -4638056 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1736 462 256 72 36 chr4 150992279 150992445 -4637675 + MLT1A LTR MaLR 1 172 -202 7 1736 1169 234 145 6 chr4 150992480 150992832 -4637288 + MTD LTR MaLR 5 405 -14 7 1736 434 294 34 50 chr4 150992845 150993024 -4637096 + MLT1A LTR MaLR 173 348 -17 7 1736 290 311 185 24 chr4 150993627 150993838 -4636282 + MLT1C LTR MaLR 20 264 -203 7 1736 348 308 95 73 chr4 150994503 150994776 -4635344 + MLT1B LTR MaLR 21 299 -91 7 1737 280 329 35 14 chr4 150995045 150995190 -4634930 + MIR SINE MIR 114 261 -1 7 1737 261 0 0 0 chr4 150995294 150995323 -4634797 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1737 564 121 0 0 chr4 150996754 150996845 -4633275 + (TG)n Simple_repeat Simple_repeat 1 91 0 7 1737 192 179 0 0 chr4 150996886 150996925 -4633195 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1737 640 264 29 47 chr4 150997083 150997254 -4632866 - B4A SINE B4 0 292 125 7 1737 286 338 0 0 chr4 150997267 150997341 -4632779 - B4A SINE B4 -207 85 12 7 1737 681 147 0 0 chr4 150998346 150998502 -4631618 + (TC)n Simple_repeat Simple_repeat 1 156 0 7 1737 734 318 21 28 chr4 150999373 150999629 -4630491 + B4A SINE B4 7 270 -22 7 1737 228 111 0 0 chr4 150999629 150999665 -4630455 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1737 540 45 0 0 chr4 150999709 150999776 -4630344 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 1737 252 143 0 0 chr4 150999794 150999836 -4630284 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1737 222 270 0 0 chr4 150999890 150999964 -4630156 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1737 194 176 20 0 chr4 151000024 151000075 -4630045 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1737 811 236 73 15 chr4 151001030 151001236 -4628884 - ID_B1 SINE B4 0 224 7 2 1737 219 243 12 86 chr4 151001337 151001418 -4628702 - MIRc SINE MIR -81 187 113 3 1737 1177 227 33 133 chr4 151002152 151002532 -4627588 + MTE2a LTR MaLR 1 347 -32 4 1737 276 0 68 0 chr4 151002532 151002576 -4627544 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1737 1177 227 33 133 chr4 151002576 151002616 -4627504 + MTE2a LTR MaLR 348 379 0 4 1737 360 0 0 0 chr4 151003437 151003477 -4626643 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1737 234 0 0 0 chr4 151003477 151003502 -4626618 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1737 235 229 0 0 chr4 151003510 151003571 -4626549 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1737 219 157 0 0 chr4 151003606 151003657 -4626463 + (CATA)n Simple_repeat Simple_repeat 2 52 0 9 1737 1118 95 6 0 chr4 151003674 151003853 -4626267 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1737 531 121 0 0 chr4 151003853 151003951 -4626169 + (CATA)n Simple_repeat Simple_repeat 2 100 0 1 1737 480 77 0 0 chr4 151003954 151004019 -4626101 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 1 1737 397 261 42 34 chr4 151005399 151005518 -4624602 - B3 SINE B2 0 216 97 1 1737 577 267 34 62 chr4 151005704 151005880 -4624240 - B3A SINE B2 -11 187 17 1 1737 261 254 42 0 chr4 151006061 151006132 -4623988 + ID4 SINE ID 10 83 0 1 1737 264 100 0 0 chr4 151006155 151006195 -4623925 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1737 276 307 13 0 chr4 151006245 151006256 -4623864 + B4 SINE B4 3 74 -214 1 1737 392 167 0 0 chr4 151006256 151006316 -4623804 + ID4 SINE ID 14 73 -10 1 1737 2192 89 38 3 chr4 151007589 151007666 -4622454 + ORR1A2 LTR MaLR 1 76 -251 1 1737 501 17 0 0 chr4 151007666 151007724 -4622396 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1737 2192 89 38 3 chr4 151007724 151007962 -4622158 + ORR1A2 LTR MaLR 77 325 -2 1 1737 393 290 16 8 chr4 151008096 151008221 -4621899 + RMER15 LTR ERVL 434 559 -16 2 1737 315 0 0 0 chr4 151010598 151010633 -4619487 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1737 744 245 139 19 chr4 151010696 151010716 -4619404 - B4 SINE B4 0 292 274 2 1737 1044 128 0 0 chr4 151010716 151010895 -4619225 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1737 744 245 139 19 chr4 151010895 151011132 -4618988 - B4 SINE B4 -19 273 4 2 1737 372 182 39 16 chr4 151011264 151011392 -4618728 + GA-rich Low_complexity Low_complexity 1 131 0 2 1737 453 81 0 0 chr4 151012300 151012362 -4617758 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1737 729 0 0 0 chr4 151012362 151012443 -4617677 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 2 1737 351 0 0 0 chr4 151012527 151012566 -4617554 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1737 660 129 0 0 chr4 151012566 151012689 -4617431 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1737 450 239 0 0 chr4 151016362 151016475 -4613645 + CT-rich Low_complexity Low_complexity 3 115 0 3 1737 366 287 131 16 chr4 151016684 151016875 -4613245 - B4 SINE B4 -77 215 3 3 1737 280 297 139 0 chr4 151017001 151017102 -4613018 - PB1 SINE Alu -3 124 10 3 1737 527 203 204 4 chr4 151017261 151017416 -4612704 - B3A SINE B2 -24 192 1 3 1737 603 255 0 7 chr4 151017587 151017725 -4612395 - B1F SINE Alu 0 149 13 3 1737 222 289 70 35 chr4 151018626 151018712 -4611408 + MIR SINE MIR 16 104 -104 3 1737 244 338 13 0 chr4 151019069 151019146 -4610974 + B4 SINE B4 1 78 -214 3 1737 375 186 19 10 chr4 151019153 151019256 -4610864 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1737 691 344 19 0 chr4 151019256 151019468 -4610652 + B4A SINE B4 73 288 -4 3 1737 737 181 110 19 chr4 151019584 151019841 -4610279 + MTD LTR MaLR 5 419 0 3 1737 332 324 40 17 chr4 151020404 151020577 -4609543 + Charlie1a DNA MER1_type 24 200 -1255 3 1737 1746 329 70 35 chr4 151020640 151021505 -4608615 + Lx8 LINE L1 5957 6852 -621 4 1737 454 340 101 16 chr4 151021560 151021748 -4608372 + B4A SINE B4 85 288 -4 4 1737 550 172 16 0 chr4 151021790 151021918 -4608202 + (CA)n Simple_repeat Simple_repeat 1 130 0 4 1737 1239 307 144 14 chr4 151022173 151023104 -4607016 + L1MEc LINE L1 130 1181 -5219 4 1737 446 229 10 0 chr4 151023113 151023209 -4606911 + ID_B1 SINE B4 126 222 -2 4 1737 180 0 0 0 chr4 151023324 151023344 -4606776 + (CCA)n Simple_repeat Simple_repeat 1 20 0 4 1737 381 273 65 18 chr4 151023352 151023520 -4606600 + L1MEc LINE L1 1346 1521 -4879 4 1737 824 301 124 10 chr4 151023686 151024267 -4605853 + L1MEc LINE L1 1854 2500 -3900 4 1737 319 333 9 0 chr4 151024268 151024382 -4605738 + PB1D10 SINE Alu 1 115 -2 4 1737 281 218 23 23 chr4 151024387 151024617 -4605503 + GA-rich Low_complexity Low_complexity 1 230 0 4 1737 380 339 156 5 chr4 151024620 151024839 -4605281 + L1MEc LINE L1 2513 2762 -3557 4 1737 624 320 67 40 chr4 151025033 151025362 -4604758 + Charlie1a DNA MER1_type 534 871 -584 3 1737 228 320 50 38 chr4 151025387 151025546 -4604574 + RSINE1 SINE B4 5 165 0 4 1737 3465 28 28 9 chr4 151025682 151026110 -4604010 + RLTR10C LTR ERVK 1 436 0 4 1737 553 343 54 21 chr4 151026372 151026613 -4603507 - B4A SINE B4 -18 274 26 5 1737 245 215 139 0 chr4 151026917 151026996 -4603124 + ORR1E LTR MaLR 270 359 0 5 1737 1015 297 42 28 chr4 151026999 151027428 -4602692 + Charlie1a DNA MER1_type 965 1399 -56 3 1737 1452 122 3 8 chr4 151027451 151027806 -4602314 + (TG)n Simple_repeat Simple_repeat 1 353 0 5 1737 435 113 0 0 chr4 151028997 151029068 -4601052 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1737 372 22 0 0 chr4 151030936 151030981 -4599139 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1737 810 154 34 27 chr4 151031339 151031486 -4598634 - B1_Mur1 SINE Alu 0 149 2 5 1737 261 0 0 0 chr4 151031500 151031529 -4598591 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1737 650 269 42 36 chr4 151031635 151031868 -4598252 + ORR1E LTR MaLR 1 241 -129 5 1737 349 360 5 48 chr4 151031939 151032126 -4597994 + ORR1E LTR MaLR 163 341 -18 5 1737 450 285 164 51 chr4 151033814 151034088 -4596032 - Tigger7 DNA MER2_type -18 2473 2169 5 1737 449 316 102 42 chr4 151034311 151034575 -4595545 + B4A SINE B4 1 280 -12 5 1737 439 223 9 6 chr4 151034607 151034932 -4595188 + (CA)n Simple_repeat Simple_repeat 1 326 0 6 1737 1196 232 50 33 chr4 151035832 151036135 -4593985 + MTE2a LTR MaLR 72 379 0 6 1737 351 244 0 0 chr4 151037160 151037275 -4592845 + (TG)n Simple_repeat Simple_repeat 1 115 0 6 1737 617 284 113 9 chr4 151037378 151037591 -4592529 - B4A SINE B4 -56 236 2 6 1737 554 207 77 1 chr4 151038120 151038268 -4591852 + B3A SINE B2 1 156 -42 6 1737 330 26 0 0 chr4 151038268 151038307 -4591813 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1737 302 229 109 76 chr4 151038307 151038342 -4591778 + B2_Mm2 SINE B2 149 190 -5 6 1737 361 238 18 71 chr4 151038361 151038406 -4591714 + B4 SINE B4 186 226 -66 6 1737 308 83 0 20 chr4 151038406 151038455 -4591665 + (TATG)n Simple_repeat Simple_repeat 4 51 0 6 1737 361 238 18 71 chr4 151038455 151038522 -4591598 + B4 SINE B4 227 292 0 6 1737 385 217 11 39 chr4 151038546 151038728 -4591392 + (CATA)n Simple_repeat Simple_repeat 2 178 0 6 1737 1757 142 166 3 chr4 151038908 151039240 -4590880 - MTC LTR MaLR -8 413 28 6 1737 2656 177 52 0 chr4 151039819 151040300 -4589820 + RLTR18B LTR ERVK 1 506 -6 7 1737 1055 277 44 36 chr4 151041501 151041864 -4588256 + MTE2b LTR MaLR 1 366 -13 7 1737 1535 302 10 25 chr4 151041997 151042507 -4587613 + L1M3 LINE L1 5284 5785 -395 7 1737 668 179 6 0 chr4 151042507 151042663 -4587457 + (TG)n Simple_repeat Simple_repeat 1 157 0 7 1737 593 204 6 0 chr4 151042713 151042880 -4587240 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 1737 471 238 0 0 chr4 151042907 151043079 -4587041 + (TG)n Simple_repeat Simple_repeat 2 173 0 7 1737 189 107 0 0 chr4 151043079 151043107 -4587013 + (CG)n Simple_repeat Simple_repeat 2 29 0 7 1737 262 382 69 21 chr4 151043138 151043470 -4586650 - L2 LINE L2 -362 3057 2710 7 1737 920 221 50 35 chr4 151043603 151043889 -4586231 + MT2A LTR ERVL 1 452 -149 7 1737 288 0 0 0 chr4 151043897 151043929 -4586191 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1737 321 256 40 71 chr4 151043932 151044058 -4586062 - L1MCa LINE L1 -4545 1963 1842 7 1737 1073 57 21 0 chr4 151045433 151045573 -4584547 - B1_Mus1 SINE Alu -4 144 2 7 1737 279 54 0 0 chr4 151046016 151046053 -4584067 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 8 1737 1010 223 73 113 chr4 151046090 151046460 -4583660 - MTE2a LTR MaLR -14 365 11 8 1737 227 168 0 40 chr4 151051019 151051118 -4579002 + C-rich Low_complexity Low_complexity 2 96 0 8 1737 255 210 19 29 chr4 151052089 151052192 -4577928 + (GGGTG)n Simple_repeat Simple_repeat 1 102 0 8 1737 799 240 196 13 chr4 151052259 151052571 -4577549 - ORR1D2 LTR MaLR -1 369 1 8 1737 635 234 65 79 chr4 151052612 151052826 -4577294 - B4 SINE B4 -69 223 13 8 1737 2435 58 3 60 chr4 151052827 151053174 -4576946 + ORR1A2 LTR MaLR 1 327 0 8 1737 594 183 0 0 chr4 151053227 151053342 -4576778 + (TA)n Simple_repeat Simple_repeat 1 115 0 8 1737 528 326 48 58 chr4 151053752 151054045 -4576075 + B4A SINE B4 3 292 0 8 1737 5535 82 13 9 chr4 151054887 151056107 -4574013 + L1VL4 LINE L1 158 1387 -2172 8 1737 1852 86 4 0 chr4 151056106 151056362 -4573758 + L1_Mm LINE L1 5549 5805 -78 9 1737 353 277 67 0 chr4 151056362 151056466 -4573654 + B3A SINE B2 95 203 -13 9 1737 288 0 0 0 chr4 151056576 151056608 -4573512 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1737 265 224 0 0 chr4 151056735 151056793 -4573327 - MTD LTR MaLR -359 60 3 9 1737 576 246 141 5 chr4 151057299 151057483 -4572637 + B3 SINE B2 1 209 -7 9 1737 246 32 0 0 chr4 151057483 151057514 -4572606 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1737 195 42 0 0 chr4 151057621 151057645 -4572475 + (CTATA)n Simple_repeat Simple_repeat 2 25 0 9 1737 341 195 73 0 chr4 151057700 151057782 -4572338 - MTE2a LTR MaLR -30 349 262 9 1737 322 244 21 43 chr4 151057839 151057933 -4572187 - MTE2a LTR MaLR -278 101 10 9 1737 519 208 138 7 chr4 151058286 151058431 -4571689 + L1MB3 LINE L1 6018 6181 -2 9 1737 219 341 85 37 chr4 151058572 151058761 -4571359 - L2b LINE L2 0 3375 3178 9 1737 267 369 29 6 chr4 151059382 151059621 -4570499 + L1ME2 LINE L1 2379 2618 -3528 1 1737 725 243 296 39 chr4 151059797 151060237 -4569883 + Lx8 LINE L1 6770 7322 -151 1 1737 1322 247 75 16 chr4 151060246 151060620 -4569500 - MTD LTR MaLR -15 404 9 1 1737 325 198 0 21 chr4 151060650 151060743 -4569377 + GA-rich Low_complexity Low_complexity 5 95 0 1 1737 870 193 67 5 chr4 151060876 151061069 -4569051 + B3 SINE B2 1 205 -11 1 1737 718 173 0 52 chr4 151061611 151061745 -4568375 - B1F SINE Alu -10 139 13 1 1737 227 215 15 0 chr4 151061830 151061895 -4568225 + G-rich Low_complexity Low_complexity 4 69 0 1 1737 843 204 49 32 chr4 151062797 151063016 -4567104 + B3 SINE B2 2 197 -1 1 1737 22 0 0 0 chr4 151063075 151063097 -4567023 + AT_rich Low_complexity Low_complexity 1 22 0 1 1737 628 255 19 0 chr4 151063171 151063291 -4566829 + RSINE1 SINE B4 2 124 -41 1 1737 282 116 0 0 chr4 151063291 151063334 -4566786 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1737 628 255 19 0 chr4 151063334 151063374 -4566746 + RSINE1 SINE B4 125 164 -1 1 1737 759 167 0 0 chr4 151063376 151063514 -4566606 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1737 364 45 0 0 chr4 151063514 151063558 -4566562 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1737 437 286 61 49 chr4 151063564 151063810 -4566310 + L1ME2 LINE L1 4699 4947 -1199 1 1737 498 264 31 31 chr4 151063818 151063978 -4566142 + RSINE1 SINE B4 2 161 -4 1 1737 326 333 139 0 chr4 151064051 151064252 -4565868 + L1MD LINE L1 4988 5216 -930 1 1737 337 299 102 17 chr4 151064371 151064548 -4565572 + L1ME2 LINE L1 5355 5546 -898 1 1737 441 301 112 17 chr4 151064764 151065058 -4565062 + L1ME2 LINE L1 5625 5946 -218 1 1737 777 276 59 22 chr4 151065064 151065335 -4564785 + B4A SINE B4 4 284 -8 1 1737 281 132 0 117 chr4 151065665 151065742 -4564378 - ID4 SINE ID -7 76 9 1 1737 180 0 0 0 chr4 151066247 151066267 -4563853 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1 1737 1002 109 14 7 chr4 151066280 151066428 -4563692 - B1_Mur1 SINE Alu 0 149 1 1 1737 275 0 29 0 chr4 151066435 151066470 -4563650 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 1 1737 503 31 15 0 chr4 151066714 151066779 -4563341 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1737 306 233 0 0 chr4 151067468 151067528 -4562592 + MTEa LTR MaLR 8 67 -312 1 1737 361 323 16 0 chr4 151067520 151067647 -4562473 + MT2A LTR ERVL 271 399 -134 1 1737 2077 169 56 8 chr4 151067714 151068046 -4562074 + MTC LTR MaLR 1 353 -68 1 1737 351 0 0 0 chr4 151068046 151068085 -4562035 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1737 2077 169 56 8 chr4 151068085 151068146 -4561974 + MTC LTR MaLR 354 412 -9 1 1737 310 118 0 0 chr4 151068173 151068224 -4561896 + MT2A LTR ERVL 483 533 0 1 1737 814 232 6 26 chr4 151068249 151068464 -4561656 + B3A SINE B2 7 213 -3 1 1737 1008 259 21 17 chr4 151069745 151070036 -4560084 + B4A SINE B4 1 292 0 1 1737 183 80 0 0 chr4 151071230 151071255 -4558865 + (GGGGA)n Simple_repeat Simple_repeat 5 29 0 1 1737 243 215 0 0 chr4 151071352 151071417 -4558703 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1737 453 257 0 0 chr4 151071432 151071611 -4558509 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1737 266 237 8 0 chr4 151071669 151071787 -4558333 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 1737 875 242 153 40 chr4 151071900 151072161 -4557959 + B4 SINE B4 3 292 0 1 1737 298 323 10 0 chr4 151072163 151072262 -4557858 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1737 315 78 18 73 chr4 151072263 151072318 -4557802 + HAL1-3A_ME LINE L1 1974 2025 -833 1 1737 26 50 0 0 chr4 151072958 151072998 -4557122 + AT_rich Low_complexity Low_complexity 1 40 0 1 1737 824 300 78 3 chr4 151073026 151073357 -4556763 + ORR1D2 LTR MaLR 11 366 -4 1 1737 332 232 109 20 chr4 151073385 151073486 -4556634 - PB1D10 SINE Alu -2 115 6 1 1737 633 114 7 2 chr4 151073659 151073776 -4556344 - ORR1A4 LTR MaLR -239 128 1 1 1737 1414 195 23 78 chr4 151073787 151073837 -4556283 + MTD LTR MaLR 94 139 -280 1 1737 2080 127 12 0 chr4 151073837 151074159 -4555961 + ORR1A3 LTR MaLR 1 326 0 1 1737 1414 195 23 78 chr4 151074159 151074453 -4555667 + MTD LTR MaLR 140 419 0 1 1737 240 35 0 0 chr4 151075329 151075358 -4554762 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 1737 413 179 0 0 chr4 151075435 151075502 -4554618 + (CCCCAG)n Simple_repeat Simple_repeat 4 70 0 1 1737 870 273 61 4 chr4 151075738 151075999 -4554121 - B4 SINE B4 -15 277 2 1 1737 189 0 0 0 chr4 151076156 151076177 -4553943 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1737 212 222 55 18 chr4 151076202 151076257 -4553863 + MIR SINE MIR 113 169 -93 1 1737 285 316 155 30 chr4 151077084 151077316 -4552804 + L1MB7 LINE L1 5914 6174 -10 1 1737 254 341 0 0 chr4 151078128 151078210 -4551910 + ID4_ SINE ID 2 83 0 1 1737 3846 111 146 15 chr4 151078376 151079028 -4551092 + RMER19A LTR ERVK 1 737 0 1 1737 235 278 55 14 chr4 151079383 151079456 -4550664 + MamGypLTR1b LTR Gypsy 676 751 -31 1 1737 198 167 0 0 chr4 151079914 151079950 -4550170 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1737 297 244 63 25 chr4 151080043 151080157 -4549963 - B4A SINE B4 -16 276 165 1 1737 735 194 12 77 chr4 151080294 151080462 -4549658 + B3 SINE B2 47 203 -13 1 1737 476 257 122 20 chr4 151081557 151081704 -4548416 - RSINE1 SINE B4 -1 164 3 1 1737 553 158 0 38 chr4 151082029 151082125 -4547995 + B4 SINE B4 4 95 -197 1 1737 537 290 155 23 chr4 151082125 151082383 -4547737 + B4A SINE B4 1 292 0 1 1737 395 314 59 0 chr4 151082427 151082545 -4547575 + B4 SINE B4 82 206 -86 1 1737 387 268 0 0 chr4 151082582 151082739 -4547381 + (CA)n Simple_repeat Simple_repeat 2 158 0 1 1737 657 134 0 0 chr4 151082792 151082904 -4547216 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1737 566 302 58 58 chr4 151082919 151083246 -4546874 + L1MB1 LINE L1 5724 6050 -118 1 1737 1272 275 37 37 chr4 151083367 151083741 -4546379 + MTE2b LTR MaLR 1 374 -5 1 1737 373 235 0 12 chr4 151083895 151083981 -4546139 + PB1D10 SINE Alu 31 115 -2 1 1737 645 244 90 20 chr4 151084987 151085069 -4545051 + B4A SINE B4 1 83 -209 1 1737 234 0 0 0 chr4 151085069 151085095 -4545025 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1737 645 244 90 20 chr4 151085095 151085213 -4544907 + B4A SINE B4 84 214 -78 1 1737 198 167 0 0 chr4 151085214 151085250 -4544870 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1737 735 266 85 64 chr4 151085427 151085499 -4544621 - B4A SINE B4 -4 288 231 1 1737 641 180 256 6 chr4 151085499 151085667 -4544453 - B3 SINE B2 -6 210 1 1 1737 735 266 85 64 chr4 151085667 151085875 -4544245 - B4A SINE B4 -62 230 2 1 1737 888 254 20 0 chr4 151085902 151086103 -4544017 + B3 SINE B2 2 206 -10 1 1737 201 39 0 0 chr4 151087094 151087120 -4543000 + (CACAG)n Simple_repeat Simple_repeat 3 28 0 1 1737 958 267 65 32 chr4 151088313 151088592 -4541528 - B4 SINE B4 0 292 5 1 1737 268 256 146 13 chr4 151088679 151088837 -4541283 + L1MB8 LINE L1 5767 5945 -233 1 1737 226 241 101 9 chr4 151088870 151088979 -4541141 + L1MB8 LINE L1 6021 6139 -45 1 1737 608 272 82 0 chr4 151088979 151089137 -4540983 + B3A SINE B2 2 172 -26 1 1737 356 336 7 7 chr4 151089903 151090099 -4540021 + (CA)n Simple_repeat Simple_repeat 1 196 0 1 1737 321 326 22 34 chr4 151090124 151090302 -4539818 + (CATG)n Simple_repeat Simple_repeat 2 177 0 1 1737 297 0 0 0 chr4 151090334 151090367 -4539753 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1737 516 105 0 0 chr4 151090367 151090443 -4539677 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1737 195 162 0 0 chr4 151091971 151092008 -4538112 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1 1737 281 302 101 57 chr4 151092587 151092745 -4537375 + MIR SINE MIR 39 203 -59 1 1737 632 242 47 0 chr4 151092770 151092919 -4537201 + RSINE1 SINE B4 8 163 -2 1 1737 215 298 158 47 chr4 151092919 151092959 -4537161 + B3 SINE B2 7 216 0 1 1737 311 377 52 28 chr4 151093045 151093296 -4536824 - L2c LINE L2 -25 3362 3106 1 1737 195 69 0 0 chr4 151094841 151094870 -4535250 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1737 477 0 0 0 chr4 151095640 151095693 -4534427 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1 1737 402 321 84 57 chr4 151096587 151096957 -4533163 + MLT1D LTR MaLR 50 429 -76 1 1737 699 217 115 15 chr4 151097254 151097452 -4532668 + B3A SINE B2 2 203 -13 1 1737 311 279 6 0 chr4 151097476 151097641 -4532479 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1737 438 267 0 0 chr4 151097689 151097861 -4532259 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1737 1115 48 0 27 chr4 151097880 151098029 -4532091 + B1_Mm SINE Alu 2 146 -1 1 1737 238 314 9 56 chr4 151100098 151100112 -4530008 + ID_B1 SINE B4 76 178 -46 1 1737 402 233 12 5 chr4 151100112 151100206 -4529914 + B1F SINE Alu 5 100 -49 1 1737 448 273 6 83 chr4 151100251 151100419 -4529701 + B4A SINE B4 122 276 -16 1 1737 471 35 0 0 chr4 151100474 151100531 -4529589 + (GAAAA)n Simple_repeat Simple_repeat 1 57 0 1 1737 744 291 88 12 chr4 151100551 151100881 -4529239 + Lx8 LINE L1 7062 7416 -57 1 1737 214 262 30 15 chr4 151101156 151101222 -4528898 + MIR SINE MIR 82 148 -128 1 1737 862 164 0 0 chr4 151102181 151102327 -4527793 + B1_Mus1 SINE Alu 1 146 -2 1 1737 344 312 18 0 chr4 151102750 151102859 -4527261 + L1ME4a LINE L1 5790 5900 -224 1 1737 656 197 21 14 chr4 151103347 151103491 -4526629 + ORR1C2 LTR MaLR 1 145 -229 1 1737 878 109 8 0 chr4 151103483 151103611 -4526509 + B1_Mur3 SINE Alu 21 149 0 1 1737 1127 145 29 73 chr4 151103612 151103858 -4526262 + ORR1C2 LTR MaLR 150 384 0 1 1737 227 283 17 0 chr4 151105984 151106044 -4524076 + ID4 SINE ID 16 76 -7 1 1737 372 152 0 0 chr4 151106045 151106111 -4524009 + GA-rich Low_complexity Low_complexity 4 69 0 1 1737 240 111 0 0 chr4 151106121 151106157 -4523963 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1737 201 138 15 44 chr4 151106221 151106289 -4523831 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 1 1737 780 32 0 0 chr4 151108094 151108189 -4521931 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1 1737 1982 300 82 50 chr4 151108429 151109531 -4520589 + L1M4 LINE L1 4150 5286 -860 1 1737 573 257 21 7 chr4 151109532 151109677 -4520443 + RSINE1 SINE B4 19 165 0 2 1737 1178 300 121 28 chr4 151109890 151110462 -4519658 + Lx8 LINE L1 6842 7466 -7 2 1737 341 22 22 0 chr4 151110523 151110569 -4519551 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1737 837 178 0 33 chr4 151110570 151110721 -4519399 - B1_Mur4 SINE Alu -4 146 1 2 1737 395 289 157 91 chr4 151111044 151111451 -4518669 + L1MB3 LINE L1 5684 6117 -66 2 1737 24 67 0 0 chr4 151111885 151111930 -4518190 + AT_rich Low_complexity Low_complexity 1 45 0 2 1737 472 264 0 79 chr4 151112098 151112238 -4517882 + ID_B1 SINE B4 80 208 -16 2 1737 209 0 0 161 chr4 151112282 151112474 -4517646 + (CAGGG)n Simple_repeat Simple_repeat 4 164 0 2 1737 396 304 0 67 chr4 151114497 151114677 -4515443 - HAL1-2a_MD LINE L1 -511 2513 2346 2 1737 255 327 9 9 chr4 151114761 151114869 -4515251 + (ATG)n Simple_repeat Simple_repeat 1 108 0 2 1737 436 317 76 4 chr4 151117422 151117685 -4512435 + L1ME1 LINE L1 4593 4874 -1272 2 1737 333 257 116 41 chr4 151117928 151118074 -4512046 + RSINE1 SINE B4 9 165 0 2 1737 216 343 119 12 chr4 151117930 151118098 -4512022 + B3A SINE B2 10 195 -3 2 1737 42 36 0 0 chr4 151118112 151118168 -4511952 + AT_rich Low_complexity Low_complexity 1 56 0 2 1737 1120 184 0 19 chr4 151118195 151118405 -4511715 + B3 SINE B2 1 206 -10 2 1737 355 124 144 88 chr4 151118692 151118797 -4511323 - B1_Mur2 SINE Alu -1 148 28 2 1737 308 268 56 13 chr4 151118797 151118961 -4511159 + L1ME1 LINE L1 5447 5620 -542 2 1737 403 299 35 69 chr4 151119004 151119148 -4510972 + MTE2a LTR MaLR 10 148 -231 2 1737 604 245 14 14 chr4 151119145 151119290 -4510830 + MTE2a LTR MaLR 57 201 -178 2 1737 384 329 71 9 chr4 151119299 151119511 -4510609 + L1ME1 LINE L1 5661 5885 -294 2 1737 815 258 9 37 chr4 151119552 151119751 -4510369 + B3A SINE B2 6 200 -16 2 1737 2028 95 72 3 chr4 151119751 151120057 -4510063 + ORR1A2 LTR MaLR 1 327 0 2 1737 786 258 9 37 chr4 151120057 151120074 -4510046 + B3 SINE B2 201 216 0 2 1737 327 113 0 0 chr4 151120725 151120787 -4509333 + (A)n Simple_repeat Simple_repeat 1 62 0 2 1737 253 271 43 0 chr4 151121462 151121532 -4508588 - ID4_ SINE ID -9 74 2 2 1737 892 247 116 67 chr4 151121714 151121888 -4508232 + MTE2a LTR MaLR 18 200 -219 2 1737 1512 179 66 76 chr4 151121888 151122268 -4507852 + ORR1C1 LTR MaLR 1 376 -2 2 1737 892 241 105 67 chr4 151122268 151122461 -4507659 + MTE2a LTR MaLR 172 410 -9 2 1737 279 326 143 39 chr4 151122796 151123026 -4507094 + Charlie18a DNA MER1_type 11 264 -78 2 1737 582 15 0 0 chr4 151123912 151123979 -4506141 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1737 189 0 0 0 chr4 151124316 151124337 -4505783 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1738 181 339 0 0 chr4 151126342 151126398 -4503722 + L2a LINE L2 3371 3426 0 2 1738 332 280 119 0 chr4 151127585 151127703 -4502417 + MLT1F1 LTR MaLR 4 135 -434 2 1738 477 0 0 0 chr4 151128945 151128998 -4501122 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1738 686 270 55 32 chr4 151131271 151131489 -4498631 - ID_B1 SINE B4 -1 223 1 2 1738 750 213 0 7 chr4 151131885 151132027 -4498093 + B3 SINE B2 36 176 -40 2 1738 217 326 58 0 chr4 151133829 151133915 -4496205 + MIRb SINE MIR 55 145 -123 2 1738 228 264 27 14 chr4 151134836 151134909 -4495211 - L2a LINE L2 0 3426 3353 2 1738 184 295 56 112 chr4 151138973 151139080 -4491040 + L2c LINE L2 3260 3360 -27 2 1738 230 248 93 76 chr4 151140814 151140932 -4489188 + PB1D9 SINE Alu 1 120 0 2 1738 380 266 114 7 chr4 151141754 151141894 -4488226 - L1M5 LINE L1 -401 5763 5609 2 1738 283 279 191 25 chr4 151141932 151142094 -4488026 - B3A SINE B2 0 198 7 2 1738 233 271 106 0 chr4 151142255 151142340 -4487780 - L1ME1 LINE L1 -77 6102 6009 2 1738 415 318 105 78 chr4 151142465 151142912 -4487208 - L1ME1 LINE L1 -412 5767 5309 2 1738 620 295 96 42 chr4 151143149 151143482 -4486638 - L1ME1 LINE L1 -1148 4998 4648 2 1738 23 33 0 0 chr4 151143782 151143812 -4486308 + AT_rich Low_complexity Low_complexity 1 30 0 2 1738 912 138 28 0 chr4 151143891 151144036 -4486084 + B1_Mur3 SINE Alu 1 149 0 2 1738 456 162 126 17 chr4 151150020 151150139 -4479981 + B1_Mm SINE Alu 13 144 -3 2 1738 186 43 0 0 chr4 151151124 151151147 -4478973 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1738 1583 31 0 0 chr4 151151147 151151339 -4478781 - B2_Mm1a SINE B2 0 193 2 2 1738 207 0 0 0 chr4 151151512 151151535 -4478585 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 2 1738 302 288 0 15 chr4 151151993 151152060 -4478060 - L1MEg LINE L1 -4144 1940 1875 2 1738 306 233 225 0 chr4 151154554 151154683 -4475437 - L2a LINE L2 0 3426 3269 2 1738 912 104 0 0 chr4 151156581 151156715 -4473405 + (GGA)n Simple_repeat Simple_repeat 2 135 0 2 1738 312 247 5 38 chr4 151159783 151159895 -4470225 + B1F SINE Alu 13 118 -2 2 1738 1242 85 40 0 chr4 151160086 151160263 -4469857 + B2_Mm2 SINE B2 6 189 -6 2 1738 609 300 85 73 chr4 151162944 151163260 -4466860 + MTE2a LTR MaLR 59 378 -1 2 1738 432 315 25 6 chr4 151164388 151164551 -4465569 - MIR SINE MIR -81 181 16 2 1738 22 35 0 0 chr4 151166487 151166516 -4463604 + AT_rich Low_complexity Low_complexity 1 29 0 2 1738 458 211 221 0 chr4 151170323 151170427 -4459693 - B1_Mur1 SINE Alu -21 128 2 2 1738 995 110 0 0 chr4 151170887 151171033 -4459087 + B1_Mus1 SINE Alu 2 147 -1 2 1738 180 97 0 0 chr4 151171037 151171068 -4459052 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1738 407 200 41 31 chr4 151171178 151171276 -4458844 - B1F SINE Alu -36 113 15 2 1738 477 279 89 13 chr4 151171276 151171512 -4458608 + L1MA6 LINE L1 6047 6300 0 2 1738 1305 20 0 0 chr4 151171517 151171664 -4458456 + B1_Mus2 SINE Alu 1 147 0 2 1738 21 0 0 0 chr4 151171666 151171687 -4458433 + AT_rich Low_complexity Low_complexity 1 21 0 2 1738 411 351 112 28 chr4 151171691 151171940 -4458180 + B4A SINE B4 3 272 -20 2 1738 516 269 63 39 chr4 151172009 151172214 -4457906 + ID_B1 SINE B4 9 218 -6 2 1738 433 289 26 0 chr4 151173031 151173145 -4456975 + B4A SINE B4 3 119 -173 2 1738 1233 288 42 42 chr4 151173415 151173962 -4456158 + Lx8 LINE L1 6051 6597 -876 2 1738 1241 332 51 10 chr4 151173975 151174489 -4455631 + Lx8 LINE L1 6705 7239 -234 2 1738 308 326 96 11 chr4 151174804 151174981 -4455139 + MIRb SINE MIR 73 264 -4 2 1738 306 0 0 0 chr4 151175415 151175449 -4454671 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 2 1738 513 285 159 37 chr4 151176136 151176431 -4453689 + L1MC3 LINE L1 7262 7592 -193 2 1738 522 0 0 0 chr4 151176828 151176886 -4453234 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2 1738 435 295 75 6 chr4 151176892 151177066 -4453054 + L1MA9 LINE L1 5944 6129 -183 2 1738 420 287 9 9 chr4 151177620 151177729 -4452391 - PB1D7 SINE Alu -11 109 1 2 1738 266 86 147 0 chr4 151177845 151177892 -4452228 + L1MB3 LINE L1 5661 5713 -455 2 1738 663 225 63 37 chr4 151177962 151178151 -4451969 + B3A SINE B2 5 198 0 2 1738 244 262 80 45 chr4 151178212 151178300 -4451820 + B3A SINE B2 108 198 0 2 1738 722 243 203 13 chr4 151178331 151178631 -4451489 + L1MB3 LINE L1 5808 6164 -19 2 1738 189 195 0 0 chr4 151179520 151179561 -4450559 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1738 423 56 0 0 chr4 151179561 151179615 -4450505 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 1738 616 183 10 0 chr4 151179761 151179865 -4450255 + PB1D10 SINE Alu 1 105 -12 2 1738 288 0 0 0 chr4 151180277 151180309 -4449811 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1738 312 322 53 40 chr4 151180615 151180767 -4449353 + MLT1A1 LTR MaLR 251 404 -4 2 1738 429 20 0 0 chr4 151181388 151181438 -4448682 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1738 27 0 0 0 chr4 151182394 151182421 -4447699 + AT_rich Low_complexity Low_complexity 1 27 0 2 1738 403 299 62 38 chr4 151183415 151183624 -4446496 + LTR41 LTR ERVL 553 766 -2 2 1738 281 260 39 13 chr4 151183735 151183813 -4446307 - ID4 SINE ID -2 81 2 2 1738 486 307 115 50 chr4 151183813 151184197 -4445923 - L1MEg LINE L1 -1228 4918 4510 2 1738 255 262 0 0 chr4 151184821 151184882 -4445238 - L1MEg LINE L1 -5185 1057 997 2 1738 247 267 191 7 chr4 151185264 151185400 -4444720 + RSINE1 SINE B4 4 164 -1 2 1738 234 0 0 0 chr4 151185507 151185533 -4444587 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1738 396 0 0 0 chr4 151186344 151186388 -4443732 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1738 1146 158 99 0 chr4 151187543 151187745 -4442375 - URR1A DNA MER1_type 0 226 5 2 1738 404 283 221 6 chr4 151188191 151188522 -4441598 + MER31A LTR ERV1 78 479 -6 2 1738 360 193 133 3 chr4 151189640 151189749 -4440371 - L1MB7 LINE L1 -10 6174 6053 2 1738 287 338 54 27 chr4 151189887 151190036 -4440084 + LTR33C LTR ERVL 180 332 -297 2 1738 320 340 89 55 chr4 151190479 151190896 -4439224 - L1MB7 LINE L1 -121 6052 5622 2 1738 307 308 41 16 chr4 151191166 151191288 -4438832 - L1MB7 LINE L1 -927 5219 5095 2 1738 406 301 7 76 chr4 151191644 151191788 -4438332 + RSINE1 SINE B4 8 141 -24 2 1738 294 238 41 20 chr4 151192389 151192589 -4437531 + GA-rich Low_complexity Low_complexity 1 204 0 2 1738 328 299 123 36 chr4 151193885 151194104 -4436016 + MLT1D LTR MaLR 261 498 -7 2 1738 471 231 16 41 chr4 151194126 151194248 -4435872 - B1_Mur2 SINE Alu 0 149 31 2 1738 504 246 206 6 chr4 151194623 151194803 -4435317 + B3 SINE B2 1 216 0 2 1738 456 286 196 6 chr4 151195919 151196098 -4434022 - ID_B1 SINE B4 0 224 12 2 1738 383 254 16 0 chr4 151197008 151197117 -4433003 + L1MB7 LINE L1 6019 6131 -52 2 1738 185 0 40 0 chr4 151198789 151198814 -4431306 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2 1738 947 194 19 46 chr4 151199005 151199221 -4430899 + B3 SINE B2 1 210 -6 2 1738 982 16 0 0 chr4 151199462 151199585 -4430535 + B1_Mus1 SINE Alu 26 148 0 2 1738 314 240 49 92 chr4 151199463 151199605 -4430515 + B4A SINE B4 111 246 -46 3 1738 306 230 39 20 chr4 151199858 151199960 -4430160 + PB1D10 SINE Alu 1 104 -13 3 1738 365 271 90 30 chr4 151200115 151200248 -4429872 + B1F1 SINE Alu 9 149 0 3 1738 382 196 55 64 chr4 151200266 151200375 -4429745 + RSINE1 SINE B4 2 109 -56 3 1738 201 74 0 0 chr4 151200480 151200507 -4429613 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 1738 1160 74 0 7 chr4 151200507 151200656 -4429464 - B1_Mus1 SINE Alu 0 148 1 3 1738 488 331 19 6 chr4 151200926 151201084 -4429036 + RSINE1 SINE B4 6 165 0 3 1738 343 288 56 8 chr4 151201172 151201298 -4428822 + B4 SINE B4 147 278 -14 3 1738 226 339 108 0 chr4 151201734 151201929 -4428191 - MamRep137 DNA TcMar? -79 365 150 3 1738 959 109 6 0 chr4 151202311 151202485 -4427635 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 1738 307 232 51 0 chr4 151202790 151202880 -4427240 + B1F SINE Alu 2 104 -13 3 1738 212 253 138 12 chr4 151205635 151205715 -4424405 + MIRm SINE MIR 70 159 -117 3 1738 21 57 0 0 chr4 151206190 151206225 -4423895 + AT_rich Low_complexity Low_complexity 1 35 0 3 1738 333 0 0 0 chr4 151206708 151206745 -4423375 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1738 288 0 0 0 chr4 151206745 151206776 -4423344 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1738 942 129 71 0 chr4 151206935 151207075 -4423045 + B1_Mur4 SINE Alu 1 150 0 3 1738 618 230 193 17 chr4 151207117 151207298 -4422822 + B3 SINE B2 4 216 0 3 1738 216 162 0 0 chr4 151207350 151207387 -4422733 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1738 486 0 0 0 chr4 151207406 151207460 -4422660 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1738 261 264 14 27 chr4 151207848 151207922 -4422198 + ID4_ SINE ID 12 84 -68 3 1738 29 28 0 0 chr4 151207955 151207991 -4422129 + AT_rich Low_complexity Low_complexity 1 36 0 3 1738 229 234 230 0 chr4 151209765 151209857 -4420263 - MIRc SINE MIR -151 125 13 3 1738 735 270 150 30 chr4 151210049 151210450 -4419670 + L1MC4 LINE L1 7451 7899 -143 3 1738 2314 140 31 53 chr4 151214294 151214710 -4415410 + MTB_Mm LTR MaLR 1 407 0 3 1738 450 321 87 57 chr4 151215159 151215595 -4414525 + Tigger15a DNA TcMar 54 502 -213 3 1738 440 326 48 31 chr4 151216222 151216450 -4413670 + MLT1E2 LTR MaLR 392 623 -4 3 1738 878 226 24 24 chr4 151216555 151216768 -4413352 - B3 SINE B2 -3 213 1 3 1738 324 0 0 0 chr4 151218369 151218405 -4411715 + (CATA)n Simple_repeat Simple_repeat 3 38 0 3 1738 301 268 128 0 chr4 151218693 151218833 -4411287 + L1MB8 LINE L1 4543 4700 -1446 3 1738 283 245 52 21 chr4 151218854 151218950 -4411170 + PB1D7 SINE Alu 21 119 -1 3 1738 460 275 143 27 chr4 151218958 151219287 -4410833 + L1MB8 LINE L1 4741 5107 -1039 3 1738 393 233 159 0 chr4 151219312 151219444 -4410676 + L1MB8 LINE L1 5168 5315 -825 3 1738 318 287 83 36 chr4 151219916 151220169 -4409951 + L1MB8 LINE L1 5394 5658 -520 3 1738 307 324 78 0 chr4 151220291 151220433 -4409687 + L1MB8 LINE L1 5887 6039 -139 3 1738 453 211 8 68 chr4 151220632 151220755 -4409365 + ID_B1 SINE B4 81 197 -27 3 1738 558 0 0 0 chr4 151220755 151220817 -4409303 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1738 450 179 0 68 chr4 151221247 151221353 -4408767 - B3A SINE B2 -115 101 2 3 1738 516 175 132 0 chr4 151221690 151221804 -4408316 - RSINE1 SINE B4 0 165 37 3 1738 278 256 101 13 chr4 151222349 151222428 -4407692 - B1_Mus2 SINE Alu -1 146 61 3 1738 383 157 235 24 chr4 151224386 151224471 -4405649 + RSINE1 SINE B4 2 104 -61 3 1738 599 250 42 53 chr4 151224531 151224721 -4405399 + B3A SINE B2 1 188 -10 3 1738 720 186 152 6 chr4 151224749 151224927 -4405193 + B3 SINE B2 2 205 -11 3 1738 420 252 183 5 chr4 151225405 151225605 -4404515 + B4 SINE B4 1 271 -21 3 1738 424 189 220 28 chr4 151225640 151225749 -4404371 - RSINE1 SINE B4 -34 131 2 3 1738 228 67 0 0 chr4 151225933 151225963 -4404157 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1738 479 196 11 21 chr4 151227242 151227336 -4402784 + B3A SINE B2 1 93 -105 3 1738 234 0 0 0 chr4 151227376 151227402 -4402718 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1738 1396 43 20 65 chr4 151227413 151227613 -4402507 + B2_Mm2 SINE B2 2 192 -3 3 1738 323 248 128 0 chr4 151228732 151228849 -4401271 + ID_B1 SINE B4 70 201 -23 3 1738 278 125 36 0 chr4 151229810 151229866 -4400254 + (TGAG)n Simple_repeat Simple_repeat 1 58 0 3 1738 378 159 0 0 chr4 151230365 151230434 -4399686 + GA-rich Low_complexity Low_complexity 4 72 0 3 1738 189 0 0 0 chr4 151230580 151230601 -4399519 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1738 267 190 0 0 chr4 151232185 151232243 -4397877 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1738 395 292 38 0 chr4 151232263 151232369 -4397751 + B1_Mur2 SINE Alu 40 149 0 3 1738 290 239 23 47 chr4 151235477 151235648 -4394472 + (CCCCG)n Simple_repeat Simple_repeat 1 167 0 3 1738 191 103 26 0 chr4 151235821 151235860 -4394260 + (CCG)n Simple_repeat Simple_repeat 3 42 0 3 1738 564 279 0 0 chr4 151237579 151237708 -4392412 + L1M5 LINE L1 5537 5665 -459 3 1738 406 367 21 26 chr4 151237795 151237988 -4392132 + B3A SINE B2 3 194 -4 3 1738 647 259 16 60 chr4 151238153 151238239 -4391881 + ID SINE ID 2 79 -145 3 1738 234 365 26 17 chr4 151238239 151238356 -4391764 + PB1D9 SINE Alu 1 118 -2 3 1738 858 247 43 5 chr4 151238520 151238707 -4391413 + B3 SINE B2 2 195 -21 3 1738 369 0 0 0 chr4 151238733 151238774 -4391346 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1738 377 292 10 0 chr4 151238774 151238870 -4391250 + PB1 SINE Alu 23 119 -8 3 1738 895 306 114 45 chr4 151239126 151239598 -4390522 + Charlie1b DNA MER1_type 19 523 0 3 1738 757 118 6 40 chr4 151239661 151239837 -4390283 + (TG)n Simple_repeat Simple_repeat 2 171 0 3 1738 301 118 19 19 chr4 151239878 151239930 -4390190 - HAL1-3A_ME LINE L1 -831 2027 1976 3 1738 686 112 11 58 chr4 151239937 151240214 -4389906 + (TG)n Simple_repeat Simple_repeat 1 263 0 3 1738 683 258 6 63 chr4 151240269 151240305 -4389815 - RSINE1 SINE B4 0 165 136 3 1738 213 39 0 0 chr4 151240305 151240331 -4389789 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 3 1738 683 258 6 63 chr4 151240331 151240468 -4389652 - RSINE1 SINE B4 -30 135 2 3 1738 864 288 53 9 chr4 151240468 151240684 -4389436 - B4A SINE B4 -63 229 4 3 1738 258 316 20 59 chr4 151241361 151241462 -4388658 + PB1D7 SINE Alu 1 97 -23 3 1738 259 239 102 42 chr4 151241504 151241622 -4388498 + PB1D10 SINE Alu 5 129 -20 3 1738 254 239 0 0 chr4 151241768 151241814 -4388306 + B4 SINE B4 226 271 -21 3 1738 207 102 0 75 chr4 151242001 151242054 -4388066 + (GTTTG)n Simple_repeat Simple_repeat 5 53 0 3 1738 878 212 17 126 chr4 151242214 151242259 -4387861 + B3 SINE B2 5 49 -167 3 1738 2462 78 22 0 chr4 151242259 151242579 -4387541 + ORR1A2 LTR MaLR 1 327 0 3 1738 878 212 17 126 chr4 151242579 151242771 -4387349 + B3 SINE B2 50 216 0 3 1738 334 314 172 41 chr4 151243066 151243385 -4386735 - L2 LINE L2 -339 3080 2720 3 1738 577 287 101 65 chr4 151243425 151243731 -4386389 - MLT1D LTR MaLR -9 496 180 3 1738 334 267 81 0 chr4 151243777 151243863 -4386257 - ID_B1 SINE B4 -121 103 11 3 1738 461 242 67 15 chr4 151243865 151243999 -4386121 - MLT1D LTR MaLR -340 165 25 3 1738 761 295 0 5 chr4 151244024 151244208 -4385912 - MER58A DNA MER1_type 0 224 42 3 1738 753 224 83 0 chr4 151244346 151244502 -4385618 - B3 SINE B2 -45 171 3 3 1738 22 0 0 0 chr4 151244507 151244529 -4385591 + AT_rich Low_complexity Low_complexity 1 22 0 3 1738 225 221 0 0 chr4 151244589 151244657 -4385463 + (TTGG)n Simple_repeat Simple_repeat 4 71 0 3 1738 779 187 14 0 chr4 151244657 151244796 -4385324 - B1_Mur1 SINE Alu -8 141 1 3 1738 608 269 7 7 chr4 151244800 151244935 -4385185 - ID_B1 SINE B4 -2 222 88 3 1738 1147 54 0 45 chr4 151244960 151245114 -4385006 + B1_Mus2 SINE Alu 1 147 0 3 1738 525 71 0 0 chr4 151245114 151245184 -4384936 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 3 1738 450 303 102 34 chr4 151245206 151245442 -4384678 - L2 LINE L2 -893 2526 2275 3 1738 282 344 30 15 chr4 151245465 151245598 -4384522 - LTR37A LTR ERV1 -14 412 278 3 1738 866 229 139 42 chr4 151245741 151246074 -4384046 - MTD LTR MaLR -14 405 9 3 1738 296 283 20 10 chr4 151246303 151246403 -4383717 + ID_B1 SINE B4 75 175 -49 3 1738 461 272 9 1 chr4 151246315 151246449 -4383671 + PB1D10 SINE Alu 7 146 -3 3 1738 836 182 7 39 chr4 151247176 151247330 -4382790 + B1_Mur2 SINE Alu 1 149 0 3 1738 628 253 163 44 chr4 151247350 151247602 -4382518 + B4A SINE B4 1 282 -10 3 1738 188 35 35 0 chr4 151247616 151247645 -4382475 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1738 1095 82 7 26 chr4 151247741 151247892 -4382228 + B1_Mus1 SINE Alu 1 148 0 3 1738 693 66 0 0 chr4 151247908 151247999 -4382121 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 3 1738 1320 105 0 6 chr4 151248044 151248226 -4381894 + B2_Mm2 SINE B2 1 181 -14 3 1738 245 313 0 0 chr4 151248239 151248306 -4381814 - L2a LINE L2 -286 3140 3074 3 1738 636 264 0 24 chr4 151249253 151249420 -4380700 + B4A SINE B4 125 287 -5 3 1738 248 237 34 0 chr4 151249827 151249886 -4380234 + GA-rich Low_complexity Low_complexity 2 62 0 3 1738 1007 233 67 17 chr4 151251149 151251389 -4378731 - RMER15 LTR ERVL -15 560 309 3 1738 372 291 33 66 chr4 151251447 151251598 -4378522 - RMER15 LTR ERVL -429 146 1 3 1738 222 105 0 0 chr4 151251677 151251715 -4378405 + (CATG)n Simple_repeat Simple_repeat 2 39 0 3 1738 588 349 64 101 chr4 151251815 151251969 -4378151 - MLT1B LTR MaLR 0 390 261 3 1738 760 273 60 5 chr4 151251969 151252168 -4377952 - B3 SINE B2 -5 211 2 3 1738 588 349 64 101 chr4 151252168 151252418 -4377702 - MLT1B LTR MaLR -130 260 1 3 1738 2094 188 97 0 chr4 151253012 151253443 -4376677 + Lx9 LINE L1 6993 7465 -179 3 1738 216 0 0 0 chr4 151253627 151253651 -4376469 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1738 341 202 279 0 chr4 151253675 151253754 -4376366 + PB1D10 SINE Alu 15 115 -2 4 1738 699 269 36 6 chr4 151254239 151254407 -4375713 + B3 SINE B2 2 174 -42 4 1738 691 275 6 55 chr4 151254528 151254709 -4375411 - B3 SINE B2 -1 215 44 4 1738 292 115 58 0 chr4 151254753 151254805 -4375315 - B3A SINE B2 -142 56 2 4 1738 772 244 199 43 chr4 151254842 151255124 -4374996 - MTEb LTR MaLR 0 379 54 4 1738 1171 68 0 13 chr4 151255328 151255477 -4374643 - B1_Mm SINE Alu 0 147 1 4 1738 307 260 0 0 chr4 151255492 151255565 -4374555 - MTEb LTR MaLR -294 85 13 4 1738 1472 196 171 11 chr4 151255581 151255937 -4374183 - MTC LTR MaLR -4 417 5 4 1738 423 38 0 0 chr4 151256985 151257038 -4373082 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1739 468 212 97 0 chr4 151257450 151257563 -4372557 + PB1 SINE Alu 2 125 -2 4 1739 1629 208 128 11 chr4 151257655 151258015 -4372105 + MTD LTR MaLR 18 419 0 4 1739 23 0 0 0 chr4 151258145 151258168 -4371952 + AT_rich Low_complexity Low_complexity 1 23 0 4 1739 680 214 6 0 chr4 151258178 151258346 -4371774 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1739 637 216 0 103 chr4 151258350 151258515 -4371605 - RSINE1 SINE B4 -15 150 3 4 1739 1228 61 0 0 chr4 151258645 151258792 -4371328 - B1_Mus2 SINE Alu 0 147 1 4 1739 234 91 0 0 chr4 151258817 151258850 -4371270 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 4 1739 375 121 0 0 chr4 151258842 151258900 -4371220 + (TCC)n Simple_repeat Simple_repeat 3 60 0 4 1739 389 252 8 101 chr4 151258948 151258963 -4371157 - PB1D10 SINE Alu 0 117 105 4 1739 954 140 0 0 chr4 151258963 151259106 -4371014 - B1_Mur3 SINE Alu -6 143 1 4 1739 389 252 8 101 chr4 151259106 151259209 -4370911 - PB1D10 SINE Alu -13 104 10 4 1739 463 247 141 78 chr4 151259586 151259661 -4370459 + B4 SINE B4 4 93 -199 4 1739 1233 197 9 0 chr4 151259661 151259874 -4370246 + B3 SINE B2 2 216 0 4 1739 463 247 141 78 chr4 151259874 151260053 -4370067 + B4 SINE B4 94 274 -18 4 1739 1978 132 20 59 chr4 151260070 151260424 -4369696 + RMER19B LTR ERVK 1 340 -562 4 1739 258 306 111 0 chr4 151260492 151260564 -4369556 - RSINE1 SINE B4 -36 129 50 4 1739 286 273 0 15 chr4 151261504 151261571 -4368549 + PB1 SINE Alu 47 112 -15 4 1739 1022 198 19 0 chr4 151261585 151261792 -4368328 + B3 SINE B2 1 211 -5 4 1739 697 269 23 78 chr4 151261840 151262147 -4367973 + B4 SINE B4 3 292 0 4 1739 638 207 0 6 chr4 151262147 151262529 -4367591 + (CA)n Simple_repeat Simple_repeat 1 379 0 4 1739 663 154 58 0 chr4 151262619 151262723 -4367397 - PB1D9 SINE Alu -2 118 9 4 1739 336 228 45 98 chr4 151262626 151262738 -4367382 - MT2B2 LTR ERVL -326 258 153 4 1739 752 192 256 0 chr4 151262739 151262911 -4367209 - B3 SINE B2 0 216 1 4 1739 446 252 8 78 chr4 151262915 151263044 -4367076 - B1F SINE Alu 0 149 30 4 1739 547 191 112 19 chr4 151263084 151263191 -4366929 - PB1D7 SINE Alu -1 119 3 4 1739 675 172 8 33 chr4 151263258 151263378 -4366742 - ID_B1 SINE B4 -10 214 98 4 1739 265 307 136 0 chr4 151263305 151263393 -4366727 - PB1 SINE Alu -26 101 2 4 1739 625 346 26 6 chr4 151264526 151264736 -4365384 + ID_B1 SINE B4 23 241 -51 4 1739 235 156 65 1 chr4 151265169 151265227 -4364893 + PB1 SINE Alu 21 50 -77 4 1739 762 97 0 0 chr4 151265230 151265343 -4364777 + (GGA)n Simple_repeat Simple_repeat 3 115 0 4 1739 651 220 28 28 chr4 151265357 151265502 -4364618 + B1_Mur1 SINE Alu 5 149 0 4 1739 839 160 0 6 chr4 151265515 151265672 -4364448 + T-rich Low_complexity Low_complexity 3 158 0 4 1739 1235 61 0 0 chr4 151265672 151265819 -4364301 - B1_Mus1 SINE Alu 0 148 2 4 1739 261 297 21 32 chr4 151265852 151265968 -4364152 + ID4_ SINE ID 1 111 -41 4 1739 373 268 231 48 chr4 151266029 151266237 -4363883 + B4 SINE B4 39 284 -8 4 1739 360 282 0 0 chr4 151266261 151266520 -4363600 + (CA)n Simple_repeat Simple_repeat 1 259 0 4 1739 851 249 153 14 chr4 151266547 151266894 -4363226 + L1M4 LINE L1 3543 3937 -2209 4 1739 833 217 85 5 chr4 151267199 151267398 -4362722 - B3 SINE B2 -1 215 1 4 1739 315 0 0 0 chr4 151267435 151267470 -4362650 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1739 725 217 13 19 chr4 151267470 151267625 -4362495 - B3A SINE B2 -44 154 1 4 1739 417 221 0 0 chr4 151267689 151267793 -4362327 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1739 259 299 11 11 chr4 151268001 151268089 -4362031 + PB1D10 SINE Alu 29 116 -1 4 1739 228 299 70 130 chr4 151268148 151268201 -4361919 + B4 SINE B4 27 79 -213 4 1739 499 277 108 17 chr4 151268201 151268377 -4361743 + B3A SINE B2 1 192 -6 4 1739 228 299 70 130 chr4 151268377 151268393 -4361727 + B4 SINE B4 80 157 -135 4 1739 572 244 23 15 chr4 151268393 151268526 -4361594 + B1_Mur4 SINE Alu 9 142 -8 4 1739 228 299 70 130 chr4 151268526 151268538 -4361582 + B4 SINE B4 158 228 -64 4 1739 1133 76 7 7 chr4 151268857 151269003 -4361117 + B1_Mus2 SINE Alu 2 147 0 4 1739 609 14 0 0 chr4 151269017 151269087 -4361033 + (GGAAA)n Simple_repeat Simple_repeat 4 73 0 4 1739 311 292 69 0 chr4 151269087 151269234 -4360886 + L1M4 LINE L1 5331 5498 -682 4 1739 365 241 0 0 chr4 151269338 151269421 -4360699 + L1MB7 LINE L1 6088 6170 -14 4 1739 536 259 55 14 chr4 151269672 151269817 -4360303 + ID_B1 SINE B4 68 218 -6 4 1739 711 188 106 30 chr4 151269825 151270023 -4360097 + B3 SINE B2 1 213 -3 4 1739 2522 128 13 79 chr4 151270048 151270506 -4359614 + RLTR23 LTR ERV1 1 428 -2 4 1739 1222 214 35 0 chr4 151270537 151270794 -4359326 + Lx6 LINE L1 7193 7458 -2 4 1739 872 257 138 93 chr4 151270794 151271208 -4358912 + RLTR28B LTR ERVL 9 441 -40 4 1739 1212 185 15 0 chr4 151271432 151271637 -4358483 + B3 SINE B2 1 208 -8 4 1739 22 0 0 0 chr4 151271638 151271660 -4358460 + AT_rich Low_complexity Low_complexity 1 22 0 4 1739 351 136 0 0 chr4 151271742 151271801 -4358319 + (CATA)n Simple_repeat Simple_repeat 2 60 0 4 1739 1020 186 197 104 chr4 151271806 151272172 -4357948 + MT2A LTR ERVL 94 493 -40 4 1739 387 98 0 0 chr4 151272172 151272197 -4357923 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1739 318 106 0 0 chr4 151272197 151272244 -4357876 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1739 387 98 0 0 chr4 151272244 151272272 -4357848 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1739 989 146 0 11 chr4 151272272 151272452 -4357668 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 4 1739 387 98 0 0 chr4 151272452 151272458 -4357662 + (TA)n Simple_repeat Simple_repeat 1 6 0 4 1739 321 26 0 0 chr4 151272570 151272608 -4357512 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1739 320 256 0 13 chr4 151272609 151272688 -4357432 - ID4_ SINE ID -4 79 2 4 1739 21 0 0 0 chr4 151273300 151273321 -4356799 + AT_rich Low_complexity Low_complexity 1 21 0 4 1739 180 77 0 0 chr4 151273843 151273869 -4356251 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4 1739 806 203 82 33 chr4 151273932 151274115 -4356005 - B3A SINE B2 -4 194 3 4 1739 499 267 139 22 chr4 151274242 151274422 -4355698 - B3 SINE B2 -15 201 1 4 1739 1263 214 95 0 chr4 151274570 151274874 -4355246 - Lx8 LINE L1 -475 6998 6666 4 1739 1296 251 51 16 chr4 151274876 151275370 -4354750 + Lx9 LINE L1 7106 7644 0 4 1739 228 277 0 0 chr4 151275428 151275475 -4354645 - Lx8 LINE L1 -798 6675 6629 4 1739 353 302 100 26 chr4 151275744 151275782 -4354338 + B4 SINE B4 38 114 -178 4 1739 481 246 45 0 chr4 151275782 151275892 -4354228 + B1F SINE Alu 1 115 -34 4 1739 353 302 100 26 chr4 151275892 151275967 -4354153 + B4 SINE B4 115 273 -19 4 1739 475 268 27 40 chr4 151275977 151276125 -4353995 + Lx8 LINE L1 7188 7333 -140 4 1739 195 42 0 0 chr4 151276125 151276149 -4353971 + (GGA)n Simple_repeat Simple_repeat 2 25 0 4 1739 283 325 113 14 chr4 151276236 151276448 -4353672 + L1MB3 LINE L1 5948 6180 -3 4 1739 658 158 29 22 chr4 151277680 151277816 -4352304 + B1_Mur1 SINE Alu 12 148 -1 4 1739 210 83 83 0 chr4 151277945 151277993 -4352127 + T-rich Low_complexity Low_complexity 1 52 0 4 1739 352 250 12 0 chr4 151277993 151278073 -4352047 - ID_B1 SINE B4 -1 223 143 4 1739 889 229 54 0 chr4 151278075 151278280 -4351840 - B3 SINE B2 0 216 1 4 1739 258 32 0 0 chr4 151278786 151278817 -4351303 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1739 476 245 6 0 chr4 151278910 151279069 -4351051 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 1739 334 121 2 7 chr4 151279371 151279432 -4350688 + B3 SINE B2 2 60 -133 4 1739 222 268 0 0 chr4 151279521 151279633 -4350487 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 1739 962 218 157 0 chr4 151279633 151279881 -4350239 - B4A SINE B4 0 292 6 4 1739 228 196 0 19 chr4 151280218 151280270 -4349850 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1739 710 190 15 0 chr4 151280301 151280438 -4349682 - B1_Mur3 SINE Alu -9 140 2 4 1739 270 81 0 0 chr4 151280545 151280582 -4349538 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1739 192 185 0 0 chr4 151280863 151280917 -4349203 + C-rich Low_complexity Low_complexity 1 54 0 4 1739 243 0 0 0 chr4 151281255 151281282 -4348838 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1739 825 232 78 50 chr4 151281481 151281762 -4348358 + B4 SINE B4 3 291 -1 4 1739 230 254 0 0 chr4 151282533 151282553 -4347567 + G-rich Low_complexity Low_complexity 1 20 0 4 1739 523 224 39 23 chr4 151282553 151282681 -4347439 + B1F1 SINE Alu 4 133 -16 4 1739 230 254 0 0 chr4 151282681 151282719 -4347401 + G-rich Low_complexity Low_complexity 21 58 0 4 1739 442 304 0 15 chr4 151282752 151282889 -4347231 - B4 SINE B4 -156 136 2 5 1739 294 282 35 26 chr4 151282898 151283011 -4347109 - PB1D10 SINE Alu -3 114 1 5 1739 22 0 0 0 chr4 151283343 151283365 -4346755 + AT_rich Low_complexity Low_complexity 1 22 0 5 1739 231 114 0 0 chr4 151284324 151284359 -4345761 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1739 306 0 0 0 chr4 151284368 151284402 -4345718 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1739 1151 105 0 0 chr4 151284402 151284564 -4345556 - B2_Mm2 SINE B2 -33 162 1 5 1739 2180 296 60 80 chr4 151284571 151285195 -4344925 + RCHARR1 DNA MER1_type 4 589 -385 5 1739 2271 86 0 89 chr4 151285195 151285480 -4344640 + ORR1A2 LTR MaLR 1 270 -57 5 1739 1102 83 0 0 chr4 151285480 151285625 -4344495 + B1_Mus2 SINE Alu 2 146 -1 5 1739 2271 86 0 89 chr4 151285625 151285698 -4344422 + ORR1A2 LTR MaLR 271 327 0 5 1739 2180 296 60 80 chr4 151285698 151285939 -4344181 + RCHARR1 DNA MER1_type 590 854 -120 5 1739 739 243 84 31 chr4 151285939 151286130 -4343990 + B3 SINE B2 2 202 -14 5 1739 727 43 43 0 chr4 151286130 151286246 -4343874 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 5 1739 2180 296 60 80 chr4 151286246 151286291 -4343829 + RCHARR1 DNA MER1_type 855 897 -77 5 1739 688 144 8 31 chr4 151286405 151286534 -4343586 - B1_Mus1 SINE Alu -21 127 2 5 1739 369 320 0 0 chr4 151286548 151286645 -4343475 + RMER15 LTR ERVL 371 467 -108 5 1739 811 260 73 41 chr4 151286902 151287294 -4342826 - MLT1B LTR MaLR -58 409 1 5 1739 276 331 74 63 chr4 151287366 151287556 -4342564 - MER20 DNA MER1_type -4 215 24 5 1739 414 0 0 0 chr4 151287558 151287604 -4342516 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1739 269 314 23 106 chr4 151287738 151287917 -4342203 - L2a LINE L2 -4 3422 3256 5 1739 1379 33 15 76 chr4 151287917 151288114 -4342006 + B2_Mm1a SINE B2 1 185 -8 5 1739 269 314 23 106 chr4 151288114 151288198 -4341922 - L2a LINE L2 -171 3255 3181 5 1739 554 220 0 48 chr4 151288456 151288580 -4341540 + B3 SINE B2 2 119 -97 5 1739 462 206 9 53 chr4 151288571 151288684 -4341436 - B3 SINE B2 -108 108 1 5 1739 467 306 152 5 chr4 151288695 151288892 -4341228 - B4A SINE B4 -66 226 1 5 1739 235 289 133 0 chr4 151288919 151289009 -4341111 - B1_Mur2 SINE Alu 0 149 48 5 1739 231 341 23 52 chr4 151289034 151289207 -4340913 - B4A SINE B4 -122 170 3 5 1739 1898 140 31 131 chr4 151289280 151289700 -4340420 + ORR1C1 LTR MaLR 1 378 0 5 1739 777 273 98 19 chr4 151289744 151290061 -4340059 + ORR1E LTR MaLR 18 359 0 5 1739 1255 232 27 9 chr4 151290794 151291094 -4339026 - MTD LTR MaLR -14 405 120 5 1739 964 116 20 0 chr4 151291094 151291241 -4338879 + B1_Mur4 SINE Alu 1 150 0 5 1739 249 270 55 22 chr4 151291267 151291358 -4338762 + MTD LTR MaLR 39 132 -287 5 1739 306 0 0 0 chr4 151291704 151291738 -4338382 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1739 336 102 0 0 chr4 151292121 151292170 -4337950 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 5 1739 1219 108 0 20 chr4 151292172 151292371 -4337749 - B2_Mm2 SINE B2 0 195 1 5 1739 312 329 45 51 chr4 151292375 151292551 -4337569 - MLT1C LTR MaLR -287 180 6 5 1739 1291 56 78 0 chr4 151292681 151292861 -4337259 - B2_Mm2 SINE B2 -1 194 1 5 1739 1107 61 0 13 chr4 151292888 151293038 -4337082 + B1_Mus1 SINE Alu 1 148 0 5 1739 232 170 19 74 chr4 151294049 151294157 -4335963 + GA-rich Low_complexity Low_complexity 2 103 0 5 1739 777 221 158 8 chr4 151294161 151294407 -4335713 - B4A SINE B4 -4 288 6 5 1739 217 333 78 27 chr4 151294905 151295089 -4335031 + MIRb SINE MIR 45 246 -22 5 1739 396 153 14 14 chr4 151295109 151295182 -4334938 + ID4_ SINE ID 1 73 -10 5 1739 462 36 0 0 chr4 151295182 151295238 -4334882 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1739 573 294 39 11 chr4 151295385 151295558 -4334562 + MTEb LTR MaLR 2 179 -200 5 1739 357 229 73 0 chr4 151295558 151295654 -4334466 + B3A SINE B2 2 104 -94 5 1739 359 122 0 159 chr4 151295670 151295689 -4334431 + MTEb LTR MaLR 173 186 -193 5 1739 4023 44 79 0 chr4 151295689 151296208 -4333912 - LTRIS2 LTR ERV1 0 564 5 5 1739 359 122 0 159 chr4 151296208 151296276 -4333844 + MTEb LTR MaLR 187 246 -133 5 1739 581 184 136 0 chr4 151296545 151296692 -4333428 + MTEb LTR MaLR 208 374 -5 5 1739 592 308 83 15 chr4 151297186 151297450 -4332670 - B4A SINE B4 -10 282 1 5 1739 967 198 69 0 chr4 151297454 151297656 -4332464 - B3 SINE B2 0 216 1 5 1739 757 260 39 5 chr4 151297689 151297894 -4332226 + B3 SINE B2 5 216 0 5 1739 1031 109 52 47 chr4 151297901 151298048 -4332072 + B2_Mm2 SINE B2 2 158 -37 5 1739 182 0 0 97 chr4 151298048 151298079 -4332041 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 5 1739 1031 109 52 47 chr4 151298079 151298099 -4332021 + B2_Mm2 SINE B2 159 172 -23 5 1739 731 159 62 48 chr4 151298099 151298244 -4331876 + B1_Mus1 SINE Alu 2 148 0 5 1739 1031 109 52 47 chr4 151298244 151298267 -4331853 + B2_Mm2 SINE B2 173 194 -1 5 1739 663 78 0 0 chr4 151298281 151298371 -4331749 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 5 1739 851 152 28 0 chr4 151298576 151298721 -4331399 - B1_Mur3 SINE Alu 0 149 1 5 1739 24 0 0 0 chr4 151298721 151298745 -4331375 + AT_rich Low_complexity Low_complexity 1 24 0 5 1739 245 298 65 51 chr4 151298948 151299164 -4330956 + L1MEg LINE L1 1299 1517 -4567 5 1739 418 279 193 47 chr4 151299311 151299574 -4330546 + MTD LTR MaLR 2 332 -64 5 1739 283 306 11 23 chr4 151299601 151299688 -4330432 - MLT1A1 LTR MaLR -16 392 307 5 1739 1628 21 0 0 chr4 151299690 151299883 -4330237 + B2_Mm1a SINE B2 1 193 0 5 1739 1276 90 26 11 chr4 151299885 151300043 -4330077 + B2_Mm2 SINE B2 2 159 -36 5 1739 180 0 0 0 chr4 151300043 151300063 -4330057 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1739 1276 90 26 11 chr4 151300063 151300095 -4330025 + B2_Mm2 SINE B2 160 195 0 5 1739 1204 84 0 6 chr4 151300359 151300527 -4329593 - B2_Mm2 SINE B2 -28 167 1 5 1739 298 271 43 0 chr4 151300625 151300695 -4329425 + Charlie12 DNA MER1_type 7 79 -2794 5 1739 600 62 0 0 chr4 151301180 151301261 -4328859 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1739 1059 52 0 0 chr4 151301387 151301522 -4328598 + B1_Mus1 SINE Alu 2 136 -12 5 1739 624 27 0 0 chr4 151301522 151301596 -4328524 + (GAA)n Simple_repeat Simple_repeat 1 74 0 5 1739 2226 51 17 0 chr4 151301596 151301889 -4328231 + L1Md_F3 LINE L1 6273 6570 -14 5 1739 327 104 0 0 chr4 151301895 151301943 -4328177 + (GGA)n Simple_repeat Simple_repeat 2 49 0 5 1739 294 246 14 0 chr4 151302195 151302264 -4327856 + RSINE1 SINE B4 23 92 -73 5 1739 2269 159 29 7 chr4 151303112 151303524 -4326596 - MTC LTR MaLR 0 421 1 5 1739 1027 66 7 7 chr4 151303677 151303815 -4326305 - B1_Mus1 SINE Alu -9 139 2 5 1739 500 239 67 53 chr4 151303938 151304016 -4326104 - RSINE1 SINE B4 0 165 93 5 1739 459 0 0 0 chr4 151304016 151304067 -4326053 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1739 500 239 67 53 chr4 151304067 151304138 -4325982 - RSINE1 SINE B4 -73 92 15 5 1739 497 255 55 24 chr4 151304156 151304321 -4325799 + MTEa LTR MaLR 210 379 0 5 1739 534 254 22 0 chr4 151304612 151304750 -4325370 + ID_B1 SINE B4 84 224 0 5 1739 1286 98 10 20 chr4 151304892 151305089 -4325031 + B2_Mm2 SINE B2 1 195 0 5 1739 989 213 10 0 chr4 151305091 151305298 -4324822 + B3 SINE B2 2 210 -6 5 1739 261 0 0 0 chr4 151305876 151305905 -4324215 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1739 342 0 0 0 chr4 151305905 151305942 -4324178 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1739 180 0 0 0 chr4 151306682 151306702 -4323418 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1739 418 276 17 6 chr4 151307029 151307204 -4322916 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1739 337 169 11 43 chr4 151307240 151307425 -4322695 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1739 714 144 6 35 chr4 151307482 151307654 -4322466 + (CA)n Simple_repeat Simple_repeat 1 167 0 5 1739 417 215 0 0 chr4 151309028 151309121 -4320999 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1739 558 206 34 34 chr4 151309373 151309519 -4320601 - B1_Mur1 SINE Alu -1 148 3 5 1739 460 266 119 45 chr4 151310310 151310511 -4319609 + ID_B1 SINE B4 2 217 -7 5 1739 341 321 61 5 chr4 151310920 151311102 -4319018 - B3A SINE B2 -1 194 2 5 1739 920 58 0 0 chr4 151311129 151311250 -4318870 - B1_Mus2 SINE Alu 0 147 27 5 1739 224 255 0 0 chr4 151311325 151311372 -4318748 + B1F SINE Alu 46 92 -57 5 1739 302 217 0 0 chr4 151311538 151311598 -4318522 - RSINE1 SINE B4 -35 130 71 5 1739 364 282 88 44 chr4 151311939 151312076 -4318044 - RSINE1 SINE B4 -14 151 9 5 1739 545 242 23 0 chr4 151312332 151312464 -4317656 + ID_B1 SINE B4 88 222 -2 5 1739 1072 50 0 54 chr4 151313243 151313392 -4316728 + B1_Mus2 SINE Alu 1 141 -6 5 1739 674 64 0 0 chr4 151314147 151314241 -4315879 - B2_Mm2 SINE B2 -99 96 3 5 1739 1291 72 33 0 chr4 151314249 151314430 -4315690 - B2_Mm1t SINE B2 -6 187 1 5 1739 228 292 53 53 chr4 151314625 151314719 -4315401 + PB1D10 SINE Alu 10 103 -14 5 1739 736 102 169 0 chr4 151314719 151314837 -4315283 + B1_Mus1 SINE Alu 1 138 -10 5 1739 922 110 119 23 chr4 151314890 151315067 -4315053 + B2_Mm2 SINE B2 2 195 0 5 1739 367 196 121 20 chr4 151315241 151315340 -4314780 - ID_B1 SINE B4 -21 203 95 5 1739 947 68 0 22 chr4 151315452 151315588 -4314532 - B2_Mm1a SINE B2 -59 134 2 5 1739 369 0 0 0 chr4 151315734 151315775 -4314345 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1739 226 295 49 86 chr4 151315881 151316044 -4314076 - B4A SINE B4 -92 200 44 5 1739 3288 28 2 2 chr4 151316696 151317092 -4313028 - MTA_Mm LTR MaLR 0 396 1 5 1739 8587 46 5 1 chr4 151317092 151318186 -4311934 - MTA_Mm-int LTR MaLR 0 1098 1 5 1739 3272 35 2 0 chr4 151318186 151318581 -4311539 - MTA_Mm LTR MaLR 0 396 1 5 1739 229 351 44 69 chr4 151319193 151319352 -4310768 + MLT1I LTR MaLR 23 177 -234 5 1739 308 309 9 0 chr4 151319891 151320001 -4310119 - PB1D9 SINE Alu -9 111 1 5 1739 284 239 0 33 chr4 151320074 151320100 -4310020 + T-rich Low_complexity Low_complexity 63 88 0 5 1739 1111 54 0 26 chr4 151320100 151320251 -4309869 - B1_Mus2 SINE Alu 0 147 1 6 1739 284 239 0 33 chr4 151320251 151320315 -4309805 + T-rich Low_complexity Low_complexity 1 62 0 6 1739 448 94 4 11 chr4 151320341 151320428 -4309692 + B1_Mus2 SINE Alu 1 60 -87 6 1739 261 289 0 32 chr4 151320716 151320809 -4309311 - B3A SINE B2 -106 92 3 6 1739 325 277 48 42 chr4 151320821 151320987 -4309133 - L1M3 LINE L1 -3110 3030 2864 6 1739 555 288 21 53 chr4 151321121 151321308 -4308812 + B3A SINE B2 2 182 -16 6 1739 367 244 43 71 chr4 151321859 151321976 -4308144 + PB1D10 SINE Alu 2 114 -36 6 1739 560 235 25 61 chr4 151321976 151322139 -4307981 + RSINE1 SINE B4 2 158 -7 6 1739 235 333 8 66 chr4 151322139 151322151 -4307969 + B1_Mur4 SINE Alu 115 126 -24 6 1739 533 320 6 32 chr4 151322212 151322370 -4307750 + B3A SINE B2 45 198 0 6 1739 763 182 15 0 chr4 151322375 151322512 -4307608 + B1_Mus1 SINE Alu 2 140 -8 6 1739 374 266 41 48 chr4 151322383 151322529 -4307591 + B4A SINE B4 94 238 -54 6 1739 521 184 92 0 chr4 151325570 151325668 -4304452 + B1_Mur4 SINE Alu 3 109 -41 6 1739 301 275 164 9 chr4 151326247 151326357 -4303763 + ID_B1 SINE B4 73 199 -25 6 1739 365 273 78 0 chr4 151326519 151326647 -4303473 + ID_B1 SINE B4 86 223 -1 6 1739 330 252 92 43 chr4 151328033 151328174 -4301946 + B1F SINE Alu 1 148 -1 6 1739 258 94 0 45 chr4 151328585 151328652 -4301468 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 6 1739 1116 62 7 0 chr4 151328653 151328798 -4301322 - B1_Mus2 SINE Alu -1 146 1 6 1739 356 212 0 24 chr4 151328800 151328882 -4301238 - B1_Mur1 SINE Alu -2 147 68 6 1739 1005 70 0 14 chr4 151329290 151329436 -4300684 + B2_Mm2 SINE B2 52 195 0 6 1739 638 176 35 33 chr4 151329482 151329666 -4300454 + B3 SINE B2 1 195 0 6 1739 1176 41 0 0 chr4 151329670 151329817 -4300303 + B1_Mm SINE Alu 1 147 0 6 1739 273 57 0 0 chr4 151329825 151329860 -4300260 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1739 24 53 0 0 chr4 151329864 151329902 -4300218 + AT_rich Low_complexity Low_complexity 1 38 0 6 1739 683 243 7 20 chr4 151329907 151330054 -4300066 + B1_Mur3 SINE Alu 1 145 -4 6 1739 252 0 0 0 chr4 151330063 151330091 -4300029 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1739 207 0 0 0 chr4 151331785 151331808 -4298312 + (ACTG)n Simple_repeat Simple_repeat 2 24 0 6 1739 452 232 0 18 chr4 151332144 151332258 -4297862 + PB1D10 SINE Alu 1 112 -5 6 1739 243 235 162 0 chr4 151332274 151332342 -4297778 + ID4_ SINE ID 5 83 0 6 1739 1159 54 0 0 chr4 151333204 151333353 -4296767 - B2_Mm2 SINE B2 -45 150 2 6 1739 596 154 67 37 chr4 151333356 151333491 -4296629 - B1_Mur4 SINE Alu 0 150 12 6 1739 422 285 65 26 chr4 151333520 151333675 -4296445 + RSINE1 SINE B4 2 162 -3 6 1739 384 227 31 124 chr4 151334131 151334232 -4295888 - ORR1D2 LTR MaLR -20 350 260 6 1739 767 54 259 0 chr4 151334232 151334344 -4295776 + B1_Mus1 SINE Alu 3 143 -5 6 1739 384 227 31 124 chr4 151334344 151334403 -4295717 - ORR1D2 LTR MaLR -111 259 205 6 1739 247 287 95 11 chr4 151334433 151334528 -4295592 - ORR1D2 LTR MaLR -258 112 10 6 1739 742 159 121 0 chr4 151335094 151335226 -4294894 + B1_Mur3 SINE Alu 2 149 0 6 1739 33 0 0 0 chr4 151335226 151335259 -4294861 + AT_rich Low_complexity Low_complexity 1 33 0 6 1739 312 27 0 0 chr4 151335259 151335296 -4294824 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1739 477 216 86 29 chr4 151335560 151335665 -4294455 + PB1D9 SINE Alu 3 113 -7 6 1739 471 252 9 0 chr4 151336340 151336451 -4293669 - PB1D10 SINE Alu -5 112 1 6 1739 473 259 18 0 chr4 151336757 151336869 -4293251 - B1F SINE Alu -5 144 31 6 1739 435 263 17 17 chr4 151337226 151337342 -4292778 + ID_B1 SINE B4 105 220 -4 6 1739 311 342 170 30 chr4 151337342 151337743 -4292377 - BLACKJACK DNA AcHobo -588 2356 1900 6 1739 226 256 135 34 chr4 151337745 151337834 -4292286 + B1F1 SINE Alu 1 98 -51 6 1739 249 57 0 0 chr4 151337844 151337879 -4292241 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 1739 240 361 8 70 chr4 151337890 151338018 -4292102 + PB1D9 SINE Alu 1 120 0 6 1739 223 216 0 0 chr4 151338154 151338205 -4291915 + ID4 SINE ID 1 51 -32 6 1739 1185 208 59 59 chr4 151338449 151338866 -4291254 + RMER19A LTR ERVK 1 477 -134 6 1739 270 330 66 0 chr4 151338879 151338970 -4291150 + B4A SINE B4 192 288 -4 6 1739 350 281 32 73 chr4 151339147 151339270 -4290850 - RSINE1 SINE B4 -23 142 25 6 1739 247 320 80 0 chr4 151339507 151339582 -4290538 + B1F SINE Alu 1 81 -68 6 1739 1273 41 0 0 chr4 151339615 151339762 -4290358 - B1_Mm SINE Alu 0 147 1 6 1739 1476 63 15 30 chr4 151339767 151339964 -4290156 - B2_Mm2 SINE B2 0 195 2 6 1739 229 234 73 59 chr4 151339965 151340033 -4290087 + B1F1 SINE Alu 79 147 -2 6 1739 420 111 0 0 chr4 151340047 151340110 -4290010 + B1_Mus1 SINE Alu 2 64 -84 6 1739 270 169 68 0 chr4 151340629 151340688 -4289432 + ID_B1 SINE B4 85 147 -77 6 1739 211 286 57 0 chr4 151340688 151340699 -4289421 + PB1D10 SINE Alu 4 77 -40 6 1739 724 200 88 15 chr4 151341098 151341235 -4288885 - B1_Mur4 SINE Alu -2 148 2 6 1739 383 264 0 33 chr4 151341549 151341639 -4288481 + MTC LTR MaLR 1 87 -332 6 1739 946 56 0 0 chr4 151341698 151341823 -4288297 + B1_Mm SINE Alu 2 126 -21 6 1739 1609 157 125 41 chr4 151341829 151342174 -4287946 + MTC LTR MaLR 48 421 0 6 1739 249 298 53 61 chr4 151343438 151343570 -4286550 + ID_B1 SINE B4 4 134 -90 6 1739 1292 27 0 0 chr4 151343630 151343776 -4286344 + B1_Mus1 SINE Alu 3 148 0 6 1739 1289 64 87 0 chr4 151344391 151344550 -4285570 + B2_Mm1a SINE B2 1 160 -33 6 1739 360 0 0 0 chr4 151344550 151344590 -4285530 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 6 1739 1289 64 87 0 chr4 151344590 151344603 -4285517 + B2_Mm1a SINE B2 161 186 -7 6 1739 399 283 65 40 chr4 151345334 151345487 -4284633 - MTE2a LTR MaLR 0 379 223 6 1739 529 169 0 0 chr4 151345487 151345576 -4284544 + PB1D9 SINE Alu 1 89 -31 6 1739 229 385 48 9 chr4 151346058 151346163 -4283957 + PB1D10 SINE Alu 2 110 -7 6 1739 1319 78 50 6 chr4 151346576 151346756 -4283364 + B2_Mm2 SINE B2 4 191 -4 6 1739 528 256 25 17 chr4 151347025 151347144 -4282976 + B3 SINE B2 5 124 -92 6 1739 238 280 12 68 chr4 151348732 151348813 -4281307 - B1F1 SINE Alu -20 97 27 6 1739 628 159 14 0 chr4 151348883 151349021 -4281099 + CT-rich Low_complexity Low_complexity 2 141 0 6 1739 297 277 134 0 chr4 151349555 151349667 -4280453 + B4A SINE B4 8 134 -158 6 1739 445 224 46 9 chr4 151349708 151349816 -4280304 + B3 SINE B2 96 207 -9 6 1739 887 67 265 13 chr4 151350089 151350240 -4279880 - B2_Mm2 SINE B2 -3 192 4 6 1739 298 258 48 76 chr4 151350243 151350348 -4279772 - B3A SINE B2 0 198 97 6 1739 510 225 36 0 chr4 151350650 151350761 -4279359 - PB1D9 SINE Alu -5 115 1 6 1739 201 74 0 0 chr4 151351399 151351426 -4278694 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1739 1243 54 0 0 chr4 151351426 151351574 -4278546 - B1_Mus1 SINE Alu 0 148 1 6 1739 296 263 13 13 chr4 151352603 151352680 -4277440 - B1F1 SINE Alu -3 146 70 6 1739 1612 47 0 0 chr4 151352707 151352897 -4277223 - B2_Mm1a SINE B2 -3 190 1 6 1739 1251 104 16 5 chr4 151352899 151353083 -4277037 - B2_Mm1t SINE B2 -7 186 1 6 1739 522 246 116 32 chr4 151354372 151354561 -4275559 + B3 SINE B2 7 211 -5 6 1739 347 271 20 20 chr4 151356232 151356330 -4273790 - PB1D10 SINE Alu -3 114 17 6 1739 858 28 0 0 chr4 151356358 151356467 -4273653 - B1_Mus2 SINE Alu 0 147 39 6 1739 285 140 17 17 chr4 151356416 151356474 -4273646 - 4.5SRNA scRNA scRNA -8 86 29 6 1739 304 178 96 0 chr4 151356554 151356627 -4273493 - B3A SINE B2 -108 90 11 6 1739 342 45 0 0 chr4 151357983 151358027 -4272093 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 6 1739 278 259 173 18 chr4 151358667 151358777 -4271343 - B1F SINE Alu -22 127 1 6 1739 1296 58 109 0 chr4 151358780 151358954 -4271166 - B2_Mm2 SINE B2 -2 193 1 6 1739 763 217 65 50 chr4 151358964 151359163 -4270957 - ID_B1 SINE B4 -1 223 22 6 1739 226 257 38 32 chr4 151359229 151359323 -4270797 + T-rich Low_complexity Low_complexity 65 161 0 6 1739 1225 48 7 0 chr4 151359323 151359470 -4270650 - B1_Mus1 SINE Alu 0 148 1 6 1739 226 257 38 32 chr4 151359470 151359532 -4270588 + T-rich Low_complexity Low_complexity 5 64 0 6 1739 691 165 0 0 chr4 151359545 151359660 -4270460 - B1_Mus1 SINE Alu 0 148 34 6 1739 261 140 0 20 chr4 151359650 151359701 -4270419 - ID SINE ID -165 59 10 6 1739 280 200 37 159 chr4 151360508 151360615 -4269505 + B1F SINE Alu 38 131 -18 6 1739 261 156 20 0 chr4 151360585 151360656 -4269464 + B1_Mur4 SINE Alu 71 142 -5 6 1739 206 214 24 0 chr4 151360659 151360701 -4269419 + GA-rich Low_complexity Low_complexity 2 44 0 6 1739 344 77 19 0 chr4 151360781 151360833 -4269287 + (GGA)n Simple_repeat Simple_repeat 2 54 0 6 1739 369 163 90 117 chr4 151361420 151361531 -4268589 + MT2B LTR ERVL 149 256 -345 6 1739 659 162 9 0 chr4 151361435 151361546 -4268574 + PB1D9 SINE Alu 9 120 0 6 1739 1245 55 0 0 chr4 151361574 151361720 -4268400 + B1_Mus2 SINE Alu 2 147 0 6 1739 216 0 0 0 chr4 151361853 151361877 -4268243 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1739 22 0 0 0 chr4 151362847 151362869 -4267251 + GC_rich Low_complexity Low_complexity 1 22 0 6 1739 23 0 0 0 chr4 151364456 151364479 -4265641 + AT_rich Low_complexity Low_complexity 1 23 0 7 1739 25 0 0 0 chr4 151369271 151369296 -4260824 + GC_rich Low_complexity Low_complexity 1 25 0 7 1739 24 0 0 0 chr4 151369469 151369493 -4260627 + GC_rich Low_complexity Low_complexity 1 24 0 7 1739 36 70 0 0 chr4 151369592 151369663 -4260457 + GC_rich Low_complexity Low_complexity 1 71 0 7 1739 624 250 96 21 chr4 151372051 151372239 -4257881 + B3 SINE B2 9 210 -6 7 1739 931 34 0 0 chr4 151372246 151372363 -4257757 + B1_Mus1 SINE Alu 26 142 -6 7 1739 427 359 14 0 chr4 151372362 151372507 -4257613 + ID_B1 SINE B4 70 216 -8 7 1739 277 303 162 13 chr4 151372620 151372774 -4257346 + B3A SINE B2 15 191 -7 7 1739 222 37 0 0 chr4 151372915 151372942 -4257178 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7 1739 963 86 224 0 chr4 151372965 151373117 -4257003 + B2_Mm2 SINE B2 1 186 -9 7 1739 1361 78 67 0 chr4 151373138 151373317 -4256803 + B2_Mm2 SINE B2 5 195 0 7 1739 784 58 158 47 chr4 151373341 151373354 -4256766 - B1_Mm SINE Alu -2 145 138 7 1739 189 0 0 0 chr4 151373354 151373375 -4256745 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1739 784 58 158 47 chr4 151373375 151373488 -4256632 - B1_Mm SINE Alu -10 137 5 7 1739 830 251 43 0 chr4 151373489 151373676 -4256444 + B3 SINE B2 11 205 -11 7 1739 1176 87 116 0 chr4 151373990 151374163 -4255957 + B2_Mm2 SINE B2 1 193 -2 7 1739 284 380 11 45 chr4 151374318 151374497 -4255623 + B3A SINE B2 11 183 -15 7 1739 250 169 106 15 chr4 151374538 151374604 -4255516 - B3 SINE B2 -25 191 120 7 1739 252 0 0 0 chr4 151374884 151374912 -4255208 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1739 558 0 0 0 chr4 151375290 151375352 -4254768 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1739 1023 121 0 0 chr4 151375352 151375493 -4254627 - B1_Mus1 SINE Alu -7 141 1 7 1739 1015 130 40 29 chr4 151375523 151375697 -4254423 + B2_Mm2 SINE B2 1 176 -19 7 1739 904 214 48 24 chr4 151375699 151375905 -4254215 - B3 SINE B2 -2 214 4 7 1739 727 222 14 7 chr4 151375930 151376075 -4254045 + B1_Mur4 SINE Alu 3 148 -2 7 1739 460 247 0 0 chr4 151376236 151376329 -4253791 - PB1D10 SINE Alu -20 97 5 7 1739 238 268 9 102 chr4 151376239 151376347 -4253773 - MT2B2 LTR ERVL -334 250 153 7 1739 187 31 62 0 chr4 151376512 151376544 -4253576 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1739 909 188 14 0 chr4 151376612 151376756 -4253364 + B1_Mur1 SINE Alu 2 147 -2 7 1739 241 234 15 45 chr4 151376806 151376873 -4253247 - ID4_ SINE ID -13 70 6 7 1739 230 73 0 24 chr4 151376880 151376922 -4253198 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 7 1739 496 217 257 7 chr4 151377380 151377524 -4252596 - B3A SINE B2 -18 180 1 7 1739 1149 82 0 7 chr4 151377553 151377701 -4252419 + B1_Mus2 SINE Alu 1 147 0 7 1739 237 98 0 0 chr4 151377701 151377742 -4252378 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 7 1739 560 154 315 12 chr4 151377750 151377912 -4252208 + B3A SINE B2 2 212 -4 7 1739 1157 75 6 0 chr4 151377919 151378078 -4252042 + B2_Mm2 SINE B2 1 160 -35 7 1739 321 26 0 0 chr4 151378078 151378116 -4252004 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 7 1739 333 132 0 0 chr4 151378134 151378187 -4251933 + B2_Mm1a SINE B2 127 179 -14 7 1739 1315 101 16 0 chr4 151378192 151378381 -4251739 - B2_Mm1a SINE B2 0 193 2 7 1739 44 0 0 18 chr4 151378390 151378420 -4251700 + AT_rich Low_complexity Low_complexity 1 30 0 7 1739 1123 95 0 0 chr4 151378420 151378567 -4251553 - B1_Mus1 SINE Alu 0 148 2 7 1739 44 0 0 18 chr4 151378567 151378591 -4251529 + AT_rich Low_complexity Low_complexity 1 24 0 7 1739 258 289 13 0 chr4 151378747 151378823 -4251297 + ID4_ SINE ID 2 78 -5 7 1739 318 152 90 15 chr4 151378854 151378913 -4251207 - B1F SINE Alu -1 148 85 7 1739 243 286 8 125 chr4 151378913 151379033 -4251087 + B3A SINE B2 1 106 -92 7 1739 1400 75 48 0 chr4 151379148 151379334 -4250786 + B2_Mm2 SINE B2 1 195 0 7 1739 479 312 59 10 chr4 151379517 151379721 -4250399 - Lx9 LINE L1 -147 7497 7284 7 1739 399 252 221 0 chr4 151379788 151379915 -4250205 - Lx9 LINE L1 -507 7137 6983 7 1739 180 0 0 0 chr4 151379917 151379937 -4250183 + (AGGGGG)n Simple_repeat Simple_repeat 2 21 0 7 1739 402 250 29 39 chr4 151380049 151380153 -4249967 - PB1D9 SINE Alu -5 115 13 7 1739 294 302 129 129 chr4 151380153 151380257 -4249863 - ID_B1 SINE B4 -4 219 12 7 1739 297 206 16 16 chr4 151380194 151380258 -4249862 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 7 1739 213 231 58 0 chr4 151380268 151380320 -4249800 - B2_Mm2 SINE B2 -94 101 47 7 1739 31 26 0 0 chr4 151380337 151380375 -4249745 + AT_rich Low_complexity Low_complexity 1 38 0 7 1739 1218 114 11 6 chr4 151380375 151380551 -4249569 - B2_Mm1t SINE B2 -16 177 1 7 1739 229 378 125 9 chr4 151380590 151380610 -4249510 + B4 SINE B4 69 193 -99 7 1739 386 239 98 0 chr4 151380610 151380702 -4249418 + B1F1 SINE Alu 4 104 -45 7 1739 647 139 47 47 chr4 151380699 151380827 -4249293 + B1_Mur3 SINE Alu 13 140 -9 7 1739 279 0 0 0 chr4 151380827 151380858 -4249262 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1739 378 270 26 26 chr4 151381047 151381161 -4248959 + B1_Mur1 SINE Alu 24 137 -12 7 1739 278 319 0 0 chr4 151381568 151381640 -4248480 + ID SINE ID 2 73 -151 7 1739 245 316 38 12 chr4 151381573 151381653 -4248467 + BC1_Mm scRNA scRNA 7 88 -64 7 1739 221 186 23 0 chr4 151382231 151382274 -4247846 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7 1739 22 35 0 0 chr4 151383668 151383697 -4246423 + GC_rich Low_complexity Low_complexity 1 29 0 7 1739 302 221 91 23 chr4 151385404 151385492 -4244628 - B4 SINE B4 -65 227 134 7 1739 405 156 176 4 chr4 151385411 151385505 -4244615 - B1_Mur4 SINE Alu -6 144 38 7 1739 700 276 22 6 chr4 151385836 151386018 -4244102 - B3 SINE B2 -4 212 28 7 1739 227 224 20 0 chr4 151386027 151386076 -4244044 - ID_B1 SINE B4 -1 223 174 7 1739 300 206 14 14 chr4 151386107 151386176 -4243944 - ID SINE ID -153 71 3 7 1740 296 170 29 4 chr4 151388234 151388302 -4241818 + PB1D10 SINE Alu 40 113 -7 7 1740 284 179 0 51 chr4 151388247 151388306 -4241814 + ID_B1 SINE B4 166 221 -3 7 1740 197 254 168 19 chr4 151388733 151388852 -4241268 - L2b LINE L2 -283 3092 2965 7 1740 228 35 0 0 chr4 151388974 151389003 -4241117 + (ATG)n Simple_repeat Simple_repeat 1 29 0 7 1740 261 0 0 0 chr4 151389029 151389058 -4241062 + (CTG)n Simple_repeat Simple_repeat 1 29 0 7 1740 568 100 22 37 chr4 151391049 151391184 -4238936 + (TG)n Simple_repeat Simple_repeat 2 134 0 7 1740 707 148 17 0 chr4 151391822 151391937 -4238183 - B1_Mus1 SINE Alu -30 118 2 7 1740 800 147 13 32 chr4 151392195 151392350 -4237770 + URR1B DNA MER1_type 74 225 0 7 1740 318 131 199 29 chr4 151392652 151392753 -4237367 - B2_Mm2 SINE B2 -1 192 48 7 1740 997 145 6 18 chr4 151392805 151392974 -4237146 - B2_Mm1t SINE B2 -26 167 1 7 1740 435 289 38 23 chr4 151397274 151397405 -4232715 + RSINE1 SINE B4 1 133 -32 7 1740 1132 76 14 0 chr4 151397939 151398084 -4232036 + B1_Mus2 SINE Alu 1 147 0 7 1740 229 181 333 0 chr4 151398111 151398183 -4231937 + PB1 SINE Alu 29 124 -3 7 1740 349 292 94 0 chr4 151398702 151398808 -4231312 - B1F1 SINE Alu -2 147 32 7 1740 981 152 0 7 chr4 151399125 151399271 -4230849 - B1_Mus2 SINE Alu -1 146 2 7 1740 908 145 7 14 chr4 151399309 151399456 -4230664 + B1_Mus2 SINE Alu 1 146 -1 7 1740 1095 121 21 47 chr4 151403271 151403462 -4226658 - B2_Mm2 SINE B2 -9 186 1 7 1740 1143 118 73 0 chr4 151403495 151403673 -4226447 + B2_Mm2 SINE B2 1 191 -4 7 1740 1350 148 98 40 chr4 151404194 151404490 -4225630 + ORR1B1 LTR MaLR 41 353 -41 7 1740 692 162 0 72 chr4 151404486 151404652 -4225468 + RMER10B LTR ERVL 190 343 -55 7 1740 392 75 0 0 chr4 151404669 151404722 -4225398 + ORR1A4 LTR MaLR 277 329 0 7 1740 907 83 73 29 chr4 151405033 151405169 -4224951 + B1_Mm SINE Alu 1 142 -5 7 1740 181 30 59 29 chr4 151406960 151406994 -4223126 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 7 1740 993 51 0 21 chr4 151406994 151407134 -4222986 - B1_Mus2 SINE Alu -2 145 9 7 1740 468 270 9 0 chr4 151407443 151407558 -4222562 + ID_B1 SINE B4 102 217 -7 7 1740 734 130 9 60 chr4 151408362 151408515 -4221605 + B1_Mur2 SINE Alu 2 148 -1 7 1740 258 32 0 0 chr4 151409068 151409099 -4221021 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1740 1453 249 167 44 chr4 151409182 151409717 -4220403 + RCHARR1 DNA MER1_type 271 878 -96 7 1740 1254 93 0 126 chr4 151409717 151409766 -4220354 - B2_Mm2 SINE B2 -1 194 153 7 1740 1667 31 0 20 chr4 151409766 151409963 -4220157 + B2_Mm1a SINE B2 1 193 0 7 1740 1254 93 0 126 chr4 151409963 151410135 -4219985 - B2_Mm2 SINE B2 -43 152 1 7 1740 711 180 41 41 chr4 151410141 151410286 -4219834 - B1_Mur1 SINE Alu 0 149 5 7 1740 1453 249 167 44 chr4 151410286 151410335 -4219785 + RCHARR1 DNA MER1_type 883 935 -39 7 1740 880 74 116 0 chr4 151410340 151410461 -4219659 + B1_Mus1 SINE Alu 2 136 -12 7 1740 207 0 0 0 chr4 151410466 151410489 -4219631 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1740 1246 56 0 0 chr4 151410489 151410649 -4219471 - B2_Mm1t SINE B2 -33 160 1 7 1740 764 141 149 31 chr4 151410703 151410864 -4219256 + B2_Mm2 SINE B2 2 181 -14 7 1740 1024 62 77 0 chr4 151410870 151411000 -4219120 + B1_Mus1 SINE Alu 2 141 -7 8 1740 511 332 34 30 chr4 151411029 151411265 -4218855 - MLT2D LTR ERVL -177 237 1 8 1740 1045 81 80 6 chr4 151411801 151411963 -4218157 + B2_Mm2 SINE B2 1 174 -21 8 1740 280 206 54 126 chr4 151412087 151412198 -4217922 - PB1D10 SINE Alu -14 103 1 8 1740 256 218 0 0 chr4 151412870 151412925 -4217195 - AluG_3 SINE Alu -97 214 160 8 1740 23 54 0 0 chr4 151413696 151413733 -4216387 + GC_rich Low_complexity Low_complexity 1 37 0 8 1740 233 253 27 0 chr4 151414136 151414211 -4215909 - MIR SINE MIR -148 114 38 8 1740 485 235 62 56 chr4 151414357 151414375 -4215745 + B4 SINE B4 79 177 -115 8 1740 925 50 0 0 chr4 151414375 151414495 -4215625 + B1_Mus2 SINE Alu 7 126 -21 8 1740 487 319 86 11 chr4 151414542 151414729 -4215391 - B3 SINE B2 0 216 16 8 1740 1185 75 0 0 chr4 151414912 151415059 -4215061 + B1_Mus2 SINE Alu 1 147 0 8 1740 210 143 0 0 chr4 151415059 151415094 -4215026 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1740 222 37 0 0 chr4 151416622 151416649 -4213471 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1740 234 269 99 27 chr4 151416688 151416799 -4213321 - B4 SINE B4 -70 222 104 8 1740 839 195 0 0 chr4 151416851 151417000 -4213120 - B1_Mur4 SINE Alu -1 149 1 8 1740 468 123 0 0 chr4 151417032 151417105 -4213015 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 1740 525 157 85 25 chr4 151417261 151417379 -4212741 - B1_Mur4 SINE Alu 0 150 26 8 1740 535 161 210 8 chr4 151417499 151417618 -4212502 + B1_Mur3 SINE Alu 1 143 -6 8 1740 388 316 14 29 chr4 151417880 151418020 -4212100 - B3A SINE B2 -3 195 58 8 1740 288 281 194 43 chr4 151418223 151418476 -4211644 - B4A SINE B4 0 292 2 8 1740 480 268 108 25 chr4 151418500 151418677 -4211443 - B3A SINE B2 -4 191 6 8 1740 1186 99 72 0 chr4 151419358 151419539 -4210581 + B2_Mm2 SINE B2 1 194 -1 8 1740 1141 52 0 0 chr4 151419539 151419673 -4210447 + B1_Mm SINE Alu 1 135 -12 8 1740 213 39 0 0 chr4 151419680 151419706 -4210414 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1740 481 232 69 35 chr4 151420209 151420325 -4209795 - PB1D7 SINE Alu 0 120 1 8 1740 231 296 12 12 chr4 151421027 151421109 -4209011 - L1MD3 LINE L1 -160 7835 7754 8 1740 659 135 0 0 chr4 151421205 151421316 -4208804 - B1_Mur4 SINE Alu -4 146 36 8 1740 282 234 61 70 chr4 151421235 151421350 -4208770 - MT2B LTR ERVL -336 265 152 8 1740 243 103 0 0 chr4 151421406 151421445 -4208675 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 8 1740 756 203 27 18 chr4 151421447 151421635 -4208485 - B3 SINE B2 0 195 2 8 1740 225 194 93 40 chr4 151422334 151422409 -4207711 - RLTR25A LTR ERVK -497 606 528 8 1740 460 204 21 0 chr4 151422366 151422459 -4207661 - B1_Mus1 SINE Alu -53 95 1 8 1740 567 229 8 25 chr4 151422515 151422636 -4207484 - PB1D9 SINE Alu 0 120 2 8 1740 245 197 16 0 chr4 151422695 151422756 -4207364 + (TA)n Simple_repeat Simple_repeat 1 62 0 8 1740 1148 138 8 8 chr4 151422770 151422965 -4207155 - B2_Mm2 SINE B2 -2 196 2 8 1740 242 346 79 0 chr4 151422993 151423094 -4207026 - RSINE1 SINE B4 -13 152 44 8 1740 342 242 21 32 chr4 151423141 151423154 -4206966 - B4A SINE B4 -152 140 92 8 1740 226 293 26 124 chr4 151423154 151423189 -4206931 - B3A SINE B2 -80 118 83 8 1740 1221 115 11 0 chr4 151423189 151423363 -4206757 - B2_Mm2 SINE B2 -17 178 3 8 1740 342 242 21 32 chr4 151423363 151423408 -4206712 - B4A SINE B4 -201 91 49 8 1740 226 293 26 124 chr4 151423408 151423440 -4206680 - B3A SINE B2 -116 82 17 8 1740 288 220 190 58 chr4 151423460 151423582 -4206538 - B1_Mur1 SINE Alu 0 150 13 8 1740 1311 93 44 0 chr4 151423582 151423765 -4206355 + B2_Mm2 SINE B2 1 191 -4 8 1740 271 258 148 99 chr4 151423765 151423784 -4206336 - B1_Mur4 SINE Alu -136 14 2 8 1740 1169 49 35 0 chr4 151423831 151423974 -4206146 - B1_Mus1 SINE Alu 0 148 1 8 1740 625 228 32 90 chr4 151424239 151424348 -4205772 + URR1A DNA MER1_type 45 157 -69 8 1740 1290 41 0 0 chr4 151424348 151424495 -4205625 + B1_Mus1 SINE Alu 2 148 0 8 1740 625 228 32 90 chr4 151424495 151424573 -4205547 + URR1A DNA MER1_type 158 221 -5 8 1740 1178 68 0 0 chr4 151425056 151425203 -4204917 + B1_Mm SINE Alu 1 147 0 8 1740 287 299 93 31 chr4 151425226 151425516 -4204604 + RLTR15 LTR ERVK 52 359 0 8 1740 1129 83 0 0 chr4 151425541 151425686 -4204434 - B1_Mus1 SINE Alu 0 148 4 8 1740 321 242 59 69 chr4 151426894 151426996 -4203124 - MIR SINE MIR -66 196 96 8 1740 192 128 0 0 chr4 151427463 151427481 -4202639 + (CA)n Simple_repeat Simple_repeat 1 18 0 8 1740 1056 181 264 10 chr4 151427481 151427777 -4202343 - ORR1D1 LTR MaLR -1 373 3 8 1740 192 128 0 0 chr4 151427777 151427797 -4202323 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1740 1401 98 0 20 chr4 151427915 151428114 -4202006 - B2_Mm2 SINE B2 0 195 1 8 1740 1228 35 7 0 chr4 151428130 151428275 -4201845 - B1_Mus2 SINE Alu 0 147 2 8 1740 1504 169 182 19 chr4 151428434 151428803 -4201317 - RMER4A LTR ERVK -4 462 34 8 1740 1129 82 0 0 chr4 151428814 151428961 -4201159 - B1_Mus1 SINE Alu 0 148 2 8 1740 342 115 0 0 chr4 151428964 151429016 -4201104 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 8 1740 1166 62 14 0 chr4 151429349 151429493 -4200627 + B1_Mus2 SINE Alu 2 147 0 8 1740 298 243 235 0 chr4 151429537 151429673 -4200447 - ID_B1 SINE B4 -54 170 3 8 1740 369 207 83 41 chr4 151429779 151429900 -4200220 + B1_Mur1 SINE Alu 20 145 -4 8 1740 1159 84 0 0 chr4 151430539 151430682 -4199438 - B1_Mm SINE Alu -2 145 3 8 1740 387 206 103 0 chr4 151430728 151430825 -4199295 + B1_Mur2 SINE Alu 38 144 -5 8 1740 245 233 98 104 chr4 151430842 151431005 -4199115 - B3A SINE B2 -36 162 1 8 1740 395 266 93 5 chr4 151431056 151431217 -4198903 - B3 SINE B2 -11 187 15 8 1740 1151 84 60 110 chr4 151431247 151431415 -4198705 + B2_Mm2 SINE B2 2 173 -22 8 1740 269 26 26 0 chr4 151431415 151431453 -4198667 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1740 1634 22 0 0 chr4 151431455 151431634 -4198486 - B2_Mm1a SINE B2 -14 179 1 8 1740 1126 82 7 27 chr4 151431638 151431788 -4198332 - B1_Mm SINE Alu 0 147 1 8 1740 1151 84 60 110 chr4 151431788 151431811 -4198309 + B2_Mm2 SINE B2 174 191 -4 8 1740 311 272 34 95 chr4 151432150 151432213 -4197907 - B2_Mm2 SINE B2 0 195 129 8 1740 225 65 0 0 chr4 151432213 151432244 -4197876 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1740 329 270 39 28 chr4 151432244 151432359 -4197761 - B3A SINE B2 -67 131 28 8 1740 1469 65 38 0 chr4 151433958 151434144 -4195976 + B2_Mm2 SINE B2 1 193 -2 8 1740 339 258 43 11 chr4 151434437 151434531 -4195589 - PB1D10 SINE Alu -8 109 13 8 1740 1206 43 0 0 chr4 151434604 151434745 -4195375 + B1_Mus2 SINE Alu 1 141 -6 8 1740 213 39 0 0 chr4 151435056 151435082 -4195038 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1740 269 268 107 0 chr4 151435212 151435324 -4194796 - B1F1 SINE Alu -15 134 11 8 1740 479 219 130 0 chr4 151435895 151436018 -4194102 - B1F2 SINE Alu -2 147 9 8 1740 880 222 23 42 chr4 151436018 151436234 -4193886 + B3 SINE B2 3 214 -2 8 1740 289 125 83 0 chr4 151436323 151436371 -4193749 - B3 SINE B2 -113 103 52 8 1740 654 183 2 80 chr4 151437481 151437646 -4192474 + B1_Mus2 SINE Alu 1 150 0 8 1740 1159 75 0 7 chr4 151437707 151437855 -4192265 + B1_Mus2 SINE Alu 1 147 0 8 1740 1390 60 37 37 chr4 151437963 151438153 -4191967 - B2_Mm2 SINE B2 -5 190 1 8 1740 460 225 91 23 chr4 151438976 151439108 -4191012 - B1F SINE Alu -8 141 1 8 1740 696 24 0 0 chr4 151439267 151439349 -4190771 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 8 1740 907 147 35 7 chr4 151439349 151439493 -4190627 - B1_Mur4 SINE Alu -2 148 1 8 1740 276 277 116 11 chr4 151439544 151439639 -4190481 - ID_B1 SINE B4 -2 222 118 8 1740 412 231 22 11 chr4 151439638 151439730 -4190390 - B3A SINE B2 -103 95 3 8 1740 591 88 0 0 chr4 151439767 151439847 -4190273 + B2_Mm2 SINE B2 1 80 -115 8 1740 368 158 0 0 chr4 151439847 151439904 -4190216 - B2_Mm2 SINE B2 -137 58 2 8 1740 419 288 82 22 chr4 151439932 151440067 -4190053 - B1_Mur1 SINE Alu -6 143 1 8 1740 445 311 18 36 chr4 151440098 151440265 -4189855 + RSINE1 SINE B4 2 165 0 8 1740 1531 28 61 0 chr4 151440301 151440482 -4189638 + B2_Mm1a SINE B2 2 193 0 8 1740 337 269 62 36 chr4 151440609 151440721 -4189399 + PB1D10 SINE Alu 3 117 0 8 1740 233 358 0 90 chr4 151440812 151440901 -4189219 + ID SINE ID 2 82 -142 8 1740 1213 68 0 0 chr4 151440948 151441096 -4189024 + B1_Mus1 SINE Alu 1 148 0 8 1740 288 130 0 0 chr4 151441139 151441185 -4188935 + (GAA)n Simple_repeat Simple_repeat 3 48 0 8 1740 1348 158 6 122 chr4 151441235 151441599 -4188521 - ORR1A2 LTR MaLR -8 319 1 8 1740 249 164 0 103 chr4 151441722 151441790 -4188330 - ORR1A4 LTR MaLR -268 61 1 8 1740 881 51 57 35 chr4 151443175 151443316 -4186804 + B2_Mm2 SINE B2 49 192 -3 8 1740 315 0 0 0 chr4 151443765 151443800 -4186320 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 8 1740 1267 44 0 0 chr4 151443800 151443960 -4186160 - B2_Mm1a SINE B2 -33 160 1 8 1740 217 374 66 0 chr4 151444162 151444253 -4185867 + MIR SINE MIR 73 169 -93 8 1740 610 150 306 0 chr4 151445446 151445593 -4184527 + B3 SINE B2 1 192 -24 9 1740 369 0 0 0 chr4 151445607 151445648 -4184472 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 9 1740 1126 51 0 35 chr4 151445648 151445791 -4184329 - B1_Mus2 SINE Alu -9 138 1 9 1740 312 111 0 0 chr4 151445791 151445845 -4184275 + (T)n Simple_repeat Simple_repeat 1 54 0 9 1740 811 97 52 15 chr4 151445847 151445983 -4184137 - B1_Mur3 SINE Alu 0 149 9 9 1740 204 185 0 0 chr4 151446013 151446067 -4184053 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1740 505 256 42 132 chr4 151446069 151446258 -4183862 - B3A SINE B2 -19 179 8 9 1740 893 18 79 0 chr4 151447249 151447413 -4182707 + (TGGGGG)n Simple_repeat Simple_repeat 3 179 0 9 1740 539 302 98 23 chr4 151448296 151448469 -4181651 - ID_B1 SINE B4 -38 186 1 9 1740 341 236 109 36 chr4 151448482 151448592 -4181528 - PB1 SINE Alu -4 123 6 9 1740 1039 124 26 36 chr4 151448727 151448919 -4181201 + B3 SINE B2 2 191 -25 9 1740 693 243 20 56 chr4 151449178 151449374 -4180746 - B3A SINE B2 -9 189 1 9 1740 282 277 34 43 chr4 151449386 151449503 -4180617 - PB1D10 SINE Alu -1 116 1 9 1740 252 0 0 0 chr4 151452112 151452140 -4177980 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1740 207 0 0 0 chr4 151452365 151452388 -4177732 + (CAGC)n Simple_repeat Simple_repeat 3 25 0 9 1740 668 199 211 0 chr4 151452937 151453108 -4177012 - MTD LTR MaLR 0 419 213 9 1740 1257 116 26 21 chr4 151453154 151453347 -4176773 - B2_Mm2 SINE B2 -1 194 1 9 1740 792 113 8 8 chr4 151453392 151453526 -4176594 - B1_Mm SINE Alu 0 147 14 9 1740 347 209 68 103 chr4 151453428 151453545 -4176575 - MT2B LTR ERVL -337 264 152 9 1740 844 139 86 0 chr4 151453538 151453689 -4176431 - B2_Mm2 SINE B2 -31 164 1 9 1740 298 336 54 19 chr4 151454472 151454657 -4175463 + MIRm SINE MIR 4 193 -75 9 1740 308 232 93 47 chr4 151454660 151454746 -4175374 - B1_Mus1 SINE Alu -58 90 1 9 1740 412 264 47 54 chr4 151454811 151454843 -4175277 - B4A SINE B4 -60 232 204 9 1740 420 20 0 0 chr4 151454843 151454892 -4175228 + (CCCCCT)n Simple_repeat Simple_repeat 1 49 0 9 1740 846 0 0 0 chr4 151454892 151454985 -4175135 + (TTC)n Simple_repeat Simple_repeat 2 95 0 9 1740 817 28 0 18 chr4 151454988 151455099 -4175021 - B1_Mus1 SINE Alu -39 109 1 9 1740 1527 53 16 0 chr4 151455127 151455316 -4174804 - B2_Mm1t SINE B2 0 193 2 9 1740 797 221 57 10 chr4 151455334 151455526 -4174594 - B3 SINE B2 -1 215 15 9 1740 31 0 0 0 chr4 151455642 151455673 -4174447 + AT_rich Low_complexity Low_complexity 1 31 0 9 1740 584 216 23 23 chr4 151455675 151455803 -4174317 - B1_Mur2 SINE Alu -12 137 10 9 1740 338 224 22 66 chr4 151455771 151455862 -4174258 + B1_Mm SINE Alu 61 147 0 9 1740 682 223 157 62 chr4 151455900 151456110 -4174010 - B4A SINE B4 -62 230 1 9 1740 1479 88 5 0 chr4 151456147 151456340 -4173780 + B2_Mm2 SINE B2 2 195 0 9 1740 582 131 0 0 chr4 151456340 151456439 -4173681 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 9 1740 1003 57 0 47 chr4 151456516 151456664 -4173456 - B1_Mus1 SINE Alu 0 148 8 9 1740 423 0 0 0 chr4 151456680 151456727 -4173393 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1740 270 224 171 34 chr4 151456814 151456902 -4173218 + B3A SINE B2 1 100 -98 9 1740 249 33 0 0 chr4 151456952 151456982 -4173138 + (CATA)n Simple_repeat Simple_repeat 3 32 0 9 1740 1123 35 20 27 chr4 151457015 151457162 -4172958 + B1_Mus2 SINE Alu 2 147 0 9 1740 686 245 12 24 chr4 151457705 151457872 -4172248 - MER102b DNA MER1_type -150 191 27 9 1740 421 276 51 17 chr4 151458464 151458582 -4171538 + ID_B1 SINE B4 82 203 -21 9 1740 956 206 65 0 chr4 151459517 151459716 -4170404 - B3 SINE B2 -4 212 1 9 1740 1102 70 7 0 chr4 151459869 151460011 -4170109 - B1_Mus1 SINE Alu -5 143 1 9 1740 635 172 0 17 chr4 151460071 151460189 -4169931 + PB1D9 SINE Alu 5 120 0 9 1740 826 149 236 22 chr4 151460235 151460413 -4169707 + B3 SINE B2 1 216 0 9 1740 216 231 16 64 chr4 151460904 151461029 -4169091 + C-rich Low_complexity Low_complexity 1 119 0 9 1740 198 0 0 0 chr4 151462198 151462220 -4167900 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 9 1740 421 314 25 31 chr4 151462309 151462470 -4167650 - MIRb SINE MIR -20 248 89 9 1740 248 335 25 30 chr4 151462574 151462695 -4167425 - MIRb SINE MIR -139 129 9 9 1740 327 104 0 0 chr4 151463245 151463293 -4166827 + (CATA)n Simple_repeat Simple_repeat 1 48 0 9 1740 1294 111 26 0 chr4 151463332 151463521 -4166599 - B2_Mm2 SINE B2 -1 194 1 9 1740 204 254 73 0 chr4 151464602 151464657 -4165463 + L3 LINE CR1 4255 4313 -176 9 1740 352 257 221 35 chr4 151464680 151464793 -4165327 + PB1D7 SINE Alu 16 149 0 9 1740 574 261 156 0 chr4 151464826 151465006 -4165114 + B3 SINE B2 4 211 -5 9 1740 213 154 0 0 chr4 151465007 151465046 -4165074 + GA-rich Low_complexity Low_complexity 4 42 0 9 1740 1122 68 0 45 chr4 151465064 151465218 -4164902 + B1_Mus1 SINE Alu 2 148 0 9 1740 537 221 79 0 chr4 151465234 151465361 -4164759 + B1_Mur1 SINE Alu 6 142 -7 9 1740 782 190 12 19 chr4 151465396 151465567 -4164553 + B3 SINE B2 17 215 -1 9 1740 1241 47 0 7 chr4 151466069 151466218 -4163902 - B1_Mus1 SINE Alu 0 148 1 9 1740 234 0 0 0 chr4 151466219 151466245 -4163875 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1740 192 321 38 13 chr4 151467992 151468071 -4162049 + MIR SINE MIR 85 165 -97 9 1740 1640 31 5 0 chr4 151468119 151468311 -4161809 + B2_Mm1a SINE B2 1 193 0 9 1740 283 216 267 22 chr4 151469234 151469324 -4160796 + PB1D7 SINE Alu 2 113 -7 9 1740 1192 246 160 72 chr4 151469413 151469460 -4160660 - MT2B LTR ERVL -8 593 548 9 1740 471 78 0 0 chr4 151469460 151469524 -4160596 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 1740 1192 246 160 72 chr4 151469524 151470020 -4160100 - MT2B LTR ERVL -54 547 3 9 1740 288 0 0 0 chr4 151470480 151470512 -4159608 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1740 180 175 23 70 chr4 151471765 151471808 -4158312 - L3b LINE CR1 -15 467 427 9 1740 459 0 0 0 chr4 151471863 151471914 -4158206 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1740 536 153 41 0 chr4 151471914 151472012 -4158108 - B1_Mur2 SINE Alu -28 121 20 9 1740 254 302 59 59 chr4 151472678 151472796 -4157324 + MIRb SINE MIR 56 166 -42 9 1740 1394 64 41 0 chr4 151473099 151473271 -4156849 + B2_Mm2 SINE B2 2 180 -15 9 1740 306 0 0 0 chr4 151473274 151473308 -4156812 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1740 347 191 0 0 chr4 151473637 151473700 -4156420 + B3 SINE B2 14 76 -140 9 1740 378 191 29 0 chr4 151473788 151473856 -4156264 + ID_B1 SINE B4 147 216 -8 9 1740 260 247 0 156 chr4 151473856 151473884 -4156236 + B1_Mus2 SINE Alu 67 147 0 9 1740 399 21 0 0 chr4 151473984 151474032 -4156088 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1740 686 246 36 8 chr4 151474168 151474360 -4155760 + B3 SINE B2 22 215 -1 9 1740 797 133 102 0 chr4 151474378 151474506 -4155614 - B1_Mus1 SINE Alu -6 142 2 9 1740 231 224 14 29 chr4 151474524 151474535 -4155585 + B4 SINE B4 77 86 -206 9 1740 385 200 88 0 chr4 151474535 151474615 -4155505 + B1_Mus1 SINE Alu 3 89 -59 9 1740 288 0 0 0 chr4 151474615 151474647 -4155473 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 9 1740 291 248 93 56 chr4 151474647 151474680 -4155440 + B1F SINE Alu 91 119 -30 9 1740 239 296 122 12 chr4 151474652 151474734 -4155386 + PB1D10 SINE Alu 11 101 -16 9 1740 599 234 0 0 chr4 151474952 151475059 -4155061 + PB1D7 SINE Alu 1 107 -13 9 1740 204 343 156 47 chr4 151475256 151475596 -4154524 - L2 LINE L2 -1668 1751 1375 9 1740 238 280 0 0 chr4 151475637 151475687 -4154433 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1740 210 143 0 0 chr4 151476079 151476114 -4154006 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 9 1740 312 70 0 0 chr4 151476296 151476339 -4153781 + (CCCGG)n Simple_repeat Simple_repeat 3 45 0 9 1740 219 108 0 58 chr4 151479159 151479175 -4150945 + T-rich Low_complexity Low_complexity 50 65 0 9 1740 512 186 135 30 chr4 151479175 151479308 -4150812 - B1_Mur2 SINE Alu 0 149 3 9 1740 219 108 0 58 chr4 151479308 151479360 -4150760 + T-rich Low_complexity Low_complexity 1 49 0 9 1740 1172 76 0 0 chr4 151479361 151479506 -4150614 - B1_Mus2 SINE Alu -2 145 1 9 1740 319 239 22 0 chr4 151479552 151479644 -4150476 - B1_Mus2 SINE Alu -1 146 53 9 1740 698 262 14 65 chr4 151479655 151479865 -4150255 - B3 SINE B2 0 195 1 9 1740 363 23 0 0 chr4 151479908 151479952 -4150168 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1740 216 162 0 0 chr4 151480578 151480615 -4149505 + GA-rich Low_complexity Low_complexity 1 37 0 9 1740 554 12 23 23 chr4 151480752 151480838 -4149282 - L1Md_F3 LINE L1 0 6584 6499 9 1740 1435 208 187 6 chr4 151483015 151483368 -4146752 - MTD LTR MaLR 0 419 3 9 1740 1340 101 27 0 chr4 151483593 151483781 -4146339 - B2_Mm2 SINE B2 -1 194 2 9 1740 690 144 242 25 chr4 151483793 151483950 -4146170 - B2_Mm2 SINE B2 -4 191 1 9 1740 602 246 0 0 chr4 151484210 151484336 -4145784 - B1_Mur1 SINE Alu -23 126 1 9 1740 274 327 18 53 chr4 151484336 151484403 -4145717 - B4A SINE B4 -150 142 80 1 1740 876 146 14 14 chr4 151484405 151484551 -4145569 - B1_Mus1 SINE Alu 0 148 3 1 1740 21 0 0 0 chr4 151484560 151484581 -4145539 + AT_rich Low_complexity Low_complexity 1 21 0 1 1740 369 204 36 69 chr4 151484650 151484754 -4145366 - PB1D9 SINE Alu 0 120 14 1 1740 398 152 37 37 chr4 151484798 151484880 -4145240 + B2_Mm2 SINE B2 4 85 -110 1 1740 1617 201 81 29 chr4 151484887 151485307 -4144813 - RLTR20A2 LTR ERVK -136 442 1 1 1740 1181 122 35 6 chr4 151485763 151485936 -4144184 + B2_Mm1t SINE B2 2 179 -14 1 1740 240 220 0 0 chr4 151486003 151486053 -4144067 + B3 SINE B2 60 109 -107 1 1740 257 56 56 0 chr4 151486042 151486096 -4144024 + B2_Mm2 SINE B2 137 193 -2 1 1740 180 125 0 0 chr4 151486698 151486730 -4143390 + (GGA)n Simple_repeat Simple_repeat 1 32 0 1 1740 253 302 83 0 chr4 151486893 151486989 -4143131 + PB1D7 SINE Alu 17 120 0 1 1740 240 290 0 70 chr4 151487144 151487244 -4142876 + PB1D7 SINE Alu 28 120 0 1 1740 22 56 0 0 chr4 151487539 151487575 -4142545 + AT_rich Low_complexity Low_complexity 1 36 0 1 1740 423 80 13 0 chr4 151487581 151487652 -4142468 - B2_Mm2 SINE B2 -95 121 47 1 1740 1139 101 0 40 chr4 151487685 151487861 -4142259 - B2_Mm2 SINE B2 -26 169 1 1 1740 234 0 0 0 chr4 151490708 151490734 -4139386 + (CTG)n Simple_repeat Simple_repeat 2 27 0 1 1740 255 31 0 0 chr4 151493109 151493141 -4136979 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1740 183 80 0 0 chr4 151494963 151494988 -4135132 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1740 289 291 89 0 chr4 151495803 151495882 -4134238 + BC1_Mm scRNA scRNA 1 86 -66 1 1740 735 265 56 47 chr4 151496176 151496346 -4133774 - B3 SINE B2 0 216 37 1 1740 243 79 0 0 chr4 151496346 151496384 -4133736 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1740 1212 43 0 0 chr4 151496384 151496522 -4133598 - B1_Mm SINE Alu -9 138 1 1 1740 735 265 56 47 chr4 151496522 151496564 -4133556 - B3 SINE B2 -180 36 2 1 1740 354 262 0 12 chr4 151496575 151496656 -4133464 - ID4_ SINE ID -2 81 2 1 1740 397 177 111 16 chr4 151496666 151496790 -4133330 + MER33 DNA MER1_type 157 292 -32 1 1740 1229 56 0 0 chr4 151496790 151496951 -4133169 + B2_Mm2 SINE B2 2 162 -33 1 1740 426 39 0 0 chr4 151496951 151497003 -4133117 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 1 1740 247 152 22 0 chr4 151497004 151497050 -4133070 + MER33 DNA MER1_type 276 322 -2 1 1740 727 193 98 43 chr4 151497134 151497318 -4132802 + B3A SINE B2 5 198 0 1 1740 530 323 36 12 chr4 151497359 151497525 -4132595 - ID_B1 SINE B4 -1 223 54 1 1740 248 256 93 0 chr4 151498722 151498808 -4131312 - ORR1A3-int LTR MaLR -190 1773 1680 1 1740 543 232 0 0 chr4 151499046 151499201 -4130919 + CT-rich Low_complexity Low_complexity 2 156 0 1 1740 180 0 0 0 chr4 151501183 151501203 -4128917 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1740 252 0 0 0 chr4 151501606 151501634 -4128486 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1740 219 257 238 0 chr4 151501745 151501850 -4128270 - MIRm SINE MIR -127 149 20 3 1740 371 277 89 0 chr4 151501861 151501973 -4128147 + MER5A1 DNA MER1_type 45 166 0 4 1740 187 336 83 16 chr4 151502075 151502196 -4127924 - MIRb SINE MIR -138 130 2 5 1740 378 0 0 0 chr4 151504347 151504389 -4125731 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1740 234 91 0 0 chr4 151504972 151505005 -4125115 + (CGG)n Simple_repeat Simple_repeat 2 34 0 7 1740 579 140 135 85 chr4 151507567 151507708 -4122412 - B1_Mus1 SINE Alu 0 148 1 8 1740 226 244 115 62 chr4 151507625 151507721 -4122399 - MT2B LTR ERVL -346 255 155 9 1740 1254 48 0 0 chr4 151507730 151507876 -4122244 - B1_Mus2 SINE Alu -1 146 1 1 1740 216 67 0 0 chr4 151508425 151508455 -4121665 + (TGG)n Simple_repeat Simple_repeat 1 30 0 1 1740 288 77 0 0 chr4 151508977 151509016 -4121104 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 1740 1178 55 7 0 chr4 151509018 151509163 -4120957 - B1_Mus1 SINE Alu 0 148 3 1 1740 260 311 161 48 chr4 151510857 151511043 -4119077 + MIRb SINE MIR 22 228 -40 1 1740 390 210 180 0 chr4 151511627 151511727 -4118393 + PB1 SINE Alu 2 119 -8 1 1740 1549 57 0 15 chr4 151511751 151511947 -4118173 + B2_Mm1a SINE B2 1 193 0 1 1740 227 339 0 0 chr4 151511979 151512038 -4118082 + ID4 SINE ID 5 63 -20 1 1740 843 206 0 0 chr4 151512052 151512232 -4117888 + GA-rich Low_complexity Low_complexity 1 180 0 1 1740 649 220 76 0 chr4 151513552 151513684 -4116436 - B1_Mur2 SINE Alu -7 142 1 1 1740 1181 68 0 7 chr4 151513758 151513906 -4116214 + B1_Mus1 SINE Alu 2 148 0 2 1740 378 61 0 0 chr4 151513964 151514013 -4116107 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 1740 327 278 113 73 chr4 151514023 151514147 -4115973 - RSINE1 SINE B4 -33 132 4 2 1740 296 319 0 0 chr4 151514466 151514538 -4115582 - MER53 DNA hAT -3 190 119 2 1740 246 286 14 0 chr4 151515313 151515383 -4114737 + ID4_ SINE ID 2 72 -11 2 1740 231 146 0 0 chr4 151515383 151515424 -4114696 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1740 277 292 0 27 chr4 151515432 151515506 -4114614 + B1F1 SINE Alu 3 74 -75 2 1740 396 0 0 0 chr4 151515625 151515669 -4114451 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 2 1740 369 0 0 0 chr4 151515669 151515710 -4114410 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1740 363 187 0 62 chr4 151516344 151516424 -4113696 + B1_Mur1 SINE Alu 73 147 -2 2 1740 315 0 0 0 chr4 151516636 151516671 -4113449 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1740 1428 65 32 5 chr4 151516902 151517089 -4113031 + B2_Mm1a SINE B2 1 192 -1 3 1740 1023 32 0 0 chr4 151517155 151517278 -4112842 + (TC)n Simple_repeat Simple_repeat 2 124 0 3 1740 300 27 0 0 chr4 151517278 151517314 -4112806 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1740 654 246 151 11 chr4 151517436 151517621 -4112499 - ID_B1 SINE B4 -1 223 13 3 1740 1262 114 0 0 chr4 151517648 151517824 -4112296 - B2_Mm2 SINE B2 -19 176 1 3 1740 1203 207 9 0 chr4 151517845 151518058 -4112062 - B3 SINE B2 -1 215 1 3 1740 234 0 0 0 chr4 151518295 151518321 -4111799 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 3 1740 782 194 92 23 chr4 151518362 151518536 -4111584 - B2_Mm2 SINE B2 -9 186 1 3 1740 508 220 245 76 chr4 151518708 151519028 -4111092 + MTEa LTR MaLR 6 379 0 3 217 1057 86 36 0 chr4 151519215 151519354 -4110766 - B1_Mus1 SINE Alu 0 148 5 4 1741 216 0 0 0 chr4 151521468 151521492 -4108628 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 4 1741 1295 34 0 0 chr4 151522084 151522230 -4107890 + B1_Mus2 SINE Alu 2 147 0 4 1741 540 129 24 0 chr4 151522611 151522696 -4107424 + B1_Mur1 SINE Alu 35 121 -28 4 1741 342 0 0 0 chr4 151522706 151522744 -4107376 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 1741 339 312 0 30 chr4 151522762 151522861 -4107259 + ID_B1 SINE B4 121 216 -8 4 1741 312 263 66 0 chr4 151522865 151522941 -4107179 + ID4_ SINE ID 2 82 -1 4 1741 213 152 22 0 chr4 151525057 151525103 -4105017 + T-rich Low_complexity Low_complexity 6 52 0 4 1741 623 176 0 9 chr4 151525103 151525212 -4104908 - PB1D7 SINE Alu 0 120 13 4 1741 1368 90 26 5 chr4 151526820 151527010 -4103110 + B2_Mm2 SINE B2 2 195 0 4 1741 719 162 44 7 chr4 151527242 151527379 -4102741 + RSINE1 SINE B4 2 143 -22 5 1741 351 0 0 0 chr4 151527520 151527559 -4102561 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1741 198 0 0 0 chr4 151527559 151527581 -4102539 + (TGG)n Simple_repeat Simple_repeat 3 24 0 5 1741 240 0 33 83 chr4 151528475 151528535 -4101585 + (TTTTTG)n Simple_repeat Simple_repeat 6 62 0 5 1741 258 42 20 40 chr4 151528838 151528888 -4101232 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1741 192 139 56 0 chr4 151528982 151529018 -4101102 - MIR3 SINE MIR -53 155 118 5 1741 402 21 0 0 chr4 151529037 151529084 -4101036 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1741 656 226 23 0 chr4 151529084 151529217 -4100903 - RSINE1 SINE B4 -21 144 9 5 1741 1365 50 21 32 chr4 151529239 151529426 -4100694 - B2_Mm2 SINE B2 -9 186 2 5 1741 1118 63 21 0 chr4 151529912 151530055 -4100065 + B1_Mm SINE Alu 2 147 0 5 1741 1719 21 0 0 chr4 151530244 151530435 -4099685 + B2_Mm1a SINE B2 1 191 -2 6 1741 216 67 0 0 chr4 151530440 151530470 -4099650 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1741 1400 74 16 5 chr4 151530839 151531030 -4099090 + B2_Mm1a SINE B2 1 193 0 6 1741 909 142 8 0 chr4 151531822 151531956 -4098164 - B1_Mus1 SINE Alu -13 135 1 6 1741 508 255 86 52 chr4 151532003 151532177 -4097943 - B3A SINE B2 -4 194 15 6 1741 293 338 77 65 chr4 151532152 151532217 -4097903 + B4 SINE B4 29 95 -197 6 1741 536 209 38 0 chr4 151532217 151532322 -4097798 + B1_Mur1 SINE Alu 3 111 -38 6 1741 203 360 11 44 chr4 151535837 151535927 -4094193 + L2c LINE L2 3281 3367 -20 6 1741 1182 152 30 65 chr4 151536022 151536254 -4093866 - URR1B DNA MER1_type 0 225 2 6 1741 223 323 0 0 chr4 151536444 151536506 -4093614 + B1F SINE Alu 88 149 0 6 1741 367 148 0 0 chr4 151536515 151536576 -4093544 - B1_Mur3 SINE Alu -88 61 1 7 1741 301 230 0 26 chr4 151536576 151536591 -4093529 - B4 SINE B4 -146 146 73 7 1741 444 227 211 0 chr4 151536596 151536724 -4093396 - B3 SINE B2 -4 212 58 7 1741 422 194 114 19 chr4 151536728 151536833 -4093287 - PB1D9 SINE Alu -2 118 4 7 1741 299 331 92 33 chr4 151537267 151537420 -4092700 - B4 SINE B4 -8 284 123 7 1741 3441 34 54 24 chr4 151537458 151537668 -4092452 + RLTR10C LTR ERVK 1 222 -214 7 1741 234 0 0 0 chr4 151537668 151537694 -4092426 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 1741 3441 34 54 24 chr4 151537694 151537906 -4092214 + RLTR10C LTR ERVK 223 435 -1 7 1741 423 301 14 63 chr4 151538614 151538756 -4091364 + RSINE1 SINE B4 18 152 -13 7 1741 621 142 225 0 chr4 151538783 151538903 -4091217 + B1_Mus2 SINE Alu 1 147 0 7 1741 218 61 0 75 chr4 151538907 151538960 -4091160 + (TAA)n Simple_repeat Simple_repeat 3 51 0 7 1741 329 295 244 0 chr4 151540028 151540184 -4089936 - B3A SINE B2 -3 195 2 8 1741 363 262 18 64 chr4 151540189 151540299 -4089821 - Charlie1 DNA MER1_type -578 2203 2099 8 1741 226 402 57 0 chr4 151540302 151540461 -4089659 - Charlie1 DNA MER1_type -2605 176 9 8 1741 1523 38 38 0 chr4 151540507 151540690 -4089430 + B2_Mm1a SINE B2 3 192 -1 8 1741 628 258 38 146 chr4 151540709 151540907 -4089213 + B3A SINE B2 6 198 0 8 1741 1209 75 0 0 chr4 151540907 151541054 -4089066 + B1_Mus1 SINE Alu 2 148 0 8 1741 395 258 38 146 chr4 151541054 151541068 -4089052 + B2_Mm2 SINE B2 183 195 0 8 1741 694 209 42 28 chr4 151541097 151541240 -4088880 + B1F SINE Alu 3 147 -2 8 1741 192 135 0 0 chr4 151541486 151541523 -4088597 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1741 586 246 61 50 chr4 151541524 151541704 -4088416 - B3A SINE B2 -16 182 1 8 1741 189 0 0 0 chr4 151541729 151541750 -4088370 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1741 1622 52 0 0 chr4 151541830 151542023 -4088097 + B2_Mm1a SINE B2 1 193 0 8 1741 441 0 0 0 chr4 151542105 151542154 -4087966 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1741 488 324 89 3 chr4 151542192 151542505 -4087615 + L1MD LINE L1 2501 2840 -3306 9 1741 974 187 150 0 chr4 151542679 151542866 -4087254 + B3 SINE B2 2 216 0 9 1741 1112 90 6 6 chr4 151542886 151543054 -4087066 + B2_Mm1a SINE B2 1 168 -25 9 1741 246 204 0 0 chr4 151543113 151543162 -4086958 + L1M5 LINE L1 5616 5664 -780 9 1741 828 178 74 57 chr4 151543203 151543332 -4086788 - ORR1B1 LTR MaLR 0 394 255 9 1741 448 265 75 42 chr4 151543332 151543545 -4086575 + RLTR15 LTR ERVK 1 220 -139 9 1741 434 296 53 83 chr4 151543551 151543816 -4086304 + RLTR15 LTR ERVK 100 356 -3 9 1741 1373 148 21 21 chr4 151543818 151544060 -4086060 - ORR1B1 LTR MaLR -132 262 21 9 1741 788 221 128 0 chr4 151544485 151544680 -4085440 + ID_B1 SINE B4 5 224 0 9 1741 21 36 0 0 chr4 151545328 151545356 -4084764 + AT_rich Low_complexity Low_complexity 1 28 0 1 1741 730 207 7 0 chr4 151545364 151545504 -4084616 + B1_Mur2 SINE Alu 7 147 -2 1 1741 204 125 0 0 chr4 151545504 151545536 -4084584 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1741 29 0 0 0 chr4 151545582 151545611 -4084509 + AT_rich Low_complexity Low_complexity 1 29 0 1 1741 1193 62 0 0 chr4 151545615 151545760 -4084360 - B1_Mus2 SINE Alu 0 147 3 1 1741 741 216 39 73 chr4 151545766 151545971 -4084149 - B3A SINE B2 0 198 1 1 1741 473 185 147 9 chr4 151545992 151546101 -4084019 - B1_Mur1 SINE Alu -1 148 25 1 1741 1398 81 16 21 chr4 151546208 151546397 -4083723 - B2_Mm2 SINE B2 -6 189 2 1 1741 210 128 0 0 chr4 151546459 151546498 -4083622 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1741 369 216 212 16 chr4 151546630 151546824 -4083296 - B4A SINE B4 -60 232 1 1 1741 456 268 65 8 chr4 151546825 151546949 -4083171 - MIR SINE MIR -112 150 20 1 1741 505 195 234 0 chr4 151547102 151547230 -4082890 - B3 SINE B2 -58 158 1 1 1741 561 62 0 6 chr4 151547543 151547635 -4082485 - ORR1A4 LTR MaLR -238 89 1 1 1741 221 377 100 14 chr4 151548711 151548851 -4081269 - MIR SINE MIR -29 233 82 1 1741 213 196 0 0 chr4 151549357 151549403 -4080717 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1741 300 172 17 17 chr4 151549432 151549491 -4080629 + MTEa LTR MaLR 8 66 -313 1 1741 357 82 0 0 chr4 151549528 151549577 -4080543 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1741 392 265 211 58 chr4 151549632 151549840 -4080280 + MT2B LTR ERVL 189 428 -105 1 1741 630 237 112 0 chr4 151549928 151550097 -4080023 + MT2B LTR ERVL 414 601 0 1 1741 473 319 57 57 chr4 151550266 151550309 -4079811 - B3 SINE B2 -7 188 146 1 1741 2777 81 20 0 chr4 151550309 151550667 -4079453 - RLTR8 LTR ERVK 0 365 1 1 1741 473 307 51 39 chr4 151550667 151550803 -4079317 - B3 SINE B2 -64 152 11 1 1741 791 129 21 21 chr4 151550984 151551127 -4078993 - URR1B DNA MER1_type -2 223 81 1 1741 200 94 0 30 chr4 151552366 151552399 -4077721 + (CCG)n Simple_repeat Simple_repeat 2 33 0 1 1741 270 319 163 16 chr4 151554530 151554785 -4075335 + B4 SINE B4 21 275 -17 1 1741 725 190 58 0 chr4 151554941 151555078 -4075042 + B1_Mus2 SINE Alu 1 145 -2 1 1741 416 253 27 108 chr4 151555165 151555351 -4074769 + MIRb SINE MIR 21 191 -77 1 1741 237 319 104 21 chr4 151555588 151555610 -4074510 - B2_Mm2 SINE B2 -91 104 1 1 1741 290 284 54 0 chr4 151555610 151555684 -4074436 - B4 SINE B4 -214 78 1 1 1741 319 209 60 90 chr4 151555780 151555880 -4074240 - PB1D7 SINE Alu 0 120 24 1 1741 971 194 73 5 chr4 151556376 151556568 -4073552 - B3 SINE B2 -9 207 3 1 1741 527 85 0 12 chr4 151556968 151557051 -4073069 + (CATA)n Simple_repeat Simple_repeat 3 84 0 1 1741 320 321 45 27 chr4 151557239 151557351 -4072769 + RSINE1 SINE B4 15 128 -37 1 1741 795 51 205 0 chr4 151557410 151557527 -4072593 + B1_Mm SINE Alu 1 141 -6 1 1741 597 170 0 0 chr4 151557534 151557646 -4072474 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1741 221 319 14 27 chr4 151557660 151557673 -4072447 - ID SINE ID -140 84 12 1 1741 253 288 0 33 chr4 151557673 151557734 -4072386 - ID4_ SINE ID -13 70 12 1 1741 845 248 43 24 chr4 151557779 151557990 -4072130 - B3 SINE B2 0 216 2 1 1741 470 287 16 0 chr4 151558245 151558367 -4071753 - ID_B1 SINE B4 0 224 101 1 1741 241 309 62 41 chr4 151558254 151558399 -4071721 + YREP_Mm Unknown Unknown 186 333 -1479 1 1741 668 203 0 69 chr4 151558859 151559018 -4071102 + B1_Mur1 SINE Alu 1 148 -1 1 1741 1417 81 16 0 chr4 151559018 151559203 -4070917 + B2_Mm2 SINE B2 2 189 -6 1 1741 1441 122 282 0 chr4 151559224 151559479 -4070641 - ORR1A2 LTR MaLR 0 327 1 1 1741 21 0 0 0 chr4 151559650 151559671 -4070449 + GC_rich Low_complexity Low_complexity 1 21 0 1 1741 382 310 98 31 chr4 151560976 151561169 -4068951 + MER21B LTR ERV1 76 281 -582 1 1741 345 254 218 0 chr4 151561489 151561631 -4068489 - L1M3 LINE L1 -639 5541 5369 1 1741 247 107 16 125 chr4 151561684 151561748 -4068372 - B1_Mm SINE Alu 0 147 91 1 1741 257 196 0 19 chr4 151561768 151561820 -4068300 - ORR1E LTR MaLR -51 328 278 1 1741 396 357 34 19 chr4 151561971 151562198 -4067922 - ORR1E LTR MaLR -138 232 17 1 1741 549 269 55 51 chr4 151562207 151562442 -4067678 - RLTR15 LTR ERVK -16 343 108 1 1741 255 305 0 0 chr4 151562457 151562516 -4067604 - B1F SINE Alu -90 59 1 1 1741 791 222 26 21 chr4 151562537 151562730 -4067390 - B3A SINE B2 -1 197 4 1 1741 536 200 64 0 chr4 151562750 151562860 -4067260 - B1_Mur2 SINE Alu -7 142 26 1 1741 330 336 42 21 chr4 151562866 151563009 -4067111 - ID_B1 SINE B4 0 224 79 1 1741 423 56 0 0 chr4 151563400 151563454 -4066666 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1741 927 188 12 0 chr4 151563503 151563673 -4066447 - B3 SINE B2 -37 179 8 1 1741 314 286 11 11 chr4 151563713 151563805 -4066315 - ID_B1 SINE B4 -70 154 63 1 1741 237 311 71 38 chr4 151564296 151564480 -4065640 - L1M3 LINE L1 -425 5758 5569 1 1741 26 0 0 0 chr4 151564726 151564752 -4065368 + AT_rich Low_complexity Low_complexity 1 26 0 1 1741 2434 144 182 69 chr4 151565327 151565894 -4064226 - RMER6A LTR ERVK -7 749 104 1 1741 1223 49 0 0 chr4 151565894 151566038 -4064082 + B1_Mus2 SINE Alu 2 145 -2 1 1741 200 59 29 0 chr4 151566038 151566072 -4064048 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1741 2434 144 182 69 chr4 151566072 151566174 -4063946 - RMER6A LTR ERVK -653 103 5 1 1741 484 243 85 35 chr4 151566288 151566301 -4063819 - ID_B1 SINE B4 0 224 213 1 1741 264 77 0 0 chr4 151566301 151566340 -4063780 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1741 484 243 85 35 chr4 151566340 151566467 -4063653 - ID_B1 SINE B4 -12 212 77 1 1741 326 288 36 0 chr4 151566649 151566760 -4063360 - PB1D10 SINE Alu 0 117 3 1 1741 442 262 19 0 chr4 151566661 151566768 -4063352 - ID_B1 SINE B4 -40 184 76 1 1741 210 161 53 18 chr4 151566814 151566871 -4063249 + B1_Mur4 SINE Alu 90 148 -2 1 1741 220 322 0 44 chr4 151567234 151567325 -4062795 - RSINE1 SINE B4 -1 164 78 1 1741 245 51 0 25 chr4 151567554 151567594 -4062526 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1741 292 218 67 15 chr4 151567733 151567868 -4062252 + (CTCA)n Simple_repeat Simple_repeat 2 143 0 1 1741 1225 171 146 89 chr4 151569019 151569334 -4060786 + ORR1C1 LTR MaLR 8 340 -38 1 1741 611 158 0 28 chr4 151569346 151569464 -4060656 + B1_Mur3 SINE Alu 13 119 -30 1 1741 1095 103 0 0 chr4 151569491 151569636 -4060484 - B1_Mm SINE Alu -2 145 1 1 1741 1871 102 3 53 chr4 151569636 151569937 -4060183 - ORR1A2 LTR MaLR -41 286 1 1 1741 289 146 0 0 chr4 151570250 151570298 -4059822 + B3 SINE B2 5 52 -164 1 1741 1278 34 0 0 chr4 151570327 151570474 -4059646 - B1_Mus2 SINE Alu 0 147 1 1 1741 395 157 0 11 chr4 151570861 151570951 -4059169 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1741 756 201 7 0 chr4 151571454 151571593 -4058527 - B1_Mur3 SINE Alu 0 149 10 1 1741 302 345 33 86 chr4 151571460 151571612 -4058508 - B4 SINE B4 -72 220 77 1 1741 201 284 15 15 chr4 151572086 151572154 -4057966 + (TATG)n Simple_repeat Simple_repeat 1 68 0 1 1741 1122 8 0 0 chr4 151572318 151572445 -4057675 + (TCTCC)n Simple_repeat Simple_repeat 3 129 0 1 1741 285 125 0 0 chr4 151572446 151572502 -4057618 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1741 202 91 68 0 chr4 151572641 151572685 -4057435 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1741 1175 68 0 0 chr4 151573285 151573431 -4056689 - B1_Mus2 SINE Alu 0 147 2 1 1741 257 133 0 0 chr4 151573437 151573497 -4056623 - Lx LINE L1 -3 6651 6592 1 1741 387 141 0 0 chr4 151575950 151576014 -4054106 + (TCC)n Simple_repeat Simple_repeat 1 64 0 1 1741 626 200 111 101 chr4 151576027 151576244 -4053876 - 7SK RNA RNA -101 230 12 1 1741 467 240 104 0 chr4 151576249 151576374 -4053746 - B1_Mur1 SINE Alu -1 148 11 1 1741 1233 54 0 0 chr4 151577545 151577693 -4052427 - B1_Mus1 SINE Alu 0 148 1 1 1741 274 284 101 11 chr4 151577803 151577892 -4052228 + MLT1A1 LTR MaLR 31 127 -281 1 1741 1507 122 91 3 chr4 151577956 151578252 -4051868 - RLTR47_MM LTR ERV1 0 532 211 1 1741 268 244 73 0 chr4 151578286 151578368 -4051752 - RLTR47_MM LTR ERV1 -234 298 211 1 1741 264 244 73 0 chr4 151578373 151578455 -4051665 - RLTR47_MM LTR ERV1 -234 298 211 1 1741 1008 186 109 0 chr4 151578460 151578681 -4051439 - RLTR47_MM LTR ERV1 -234 298 54 1 1741 213 221 239 23 chr4 151578678 151578766 -4051354 + B3A SINE B2 30 136 -62 1 1741 563 238 253 14 chr4 151578896 151579173 -4050947 - Lx8 LINE L1 -243 7230 6888 1 1741 1142 95 0 0 chr4 151579213 151579361 -4050759 + B1_Mus1 SINE Alu 1 148 0 1 1741 236 55 17 69 chr4 151580102 151580160 -4049960 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1741 1233 61 0 0 chr4 151581790 151581937 -4048183 + B1_Mus2 SINE Alu 1 147 0 1 1741 273 98 0 0 chr4 151581937 151581978 -4048142 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1741 3571 30 0 0 chr4 151582102 151582498 -4047622 + MTA_Mm LTR MaLR 1 396 0 1 1741 1675 16 5 0 chr4 151582554 151582743 -4047377 - B2_Mm1a SINE B2 -1 192 3 1 1741 419 310 183 22 chr4 151582782 151583105 -4047015 + Tigger1 DNA MER2_type 30 404 -2014 1 1741 275 268 39 67 chr4 151583156 151583260 -4046860 - ID_B1 SINE B4 0 224 124 1 1741 2340 63 9 0 chr4 151583290 151583605 -4046515 + ORR1A2 LTR MaLR 1 318 -9 2 1741 267 103 0 0 chr4 151583656 151583695 -4046425 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1741 213 212 18 88 chr4 151583768 151583825 -4046295 - PB1D10 SINE Alu -39 78 26 2 1741 336 308 98 0 chr4 151583775 151583908 -4046212 - ID_B1 SINE B4 -67 157 12 2 1741 1041 299 87 32 chr4 151583924 151584360 -4045760 + Tigger1 DNA MER2_type 465 924 -1494 1 1741 532 107 12 0 chr4 151584348 151584432 -4045688 + URR1B DNA MER1_type 59 143 -82 2 1741 1213 126 17 0 chr4 151584432 151584607 -4045513 + B2_Mm1t SINE B2 2 179 -14 2 1741 342 113 6 26 chr4 151584707 151584819 -4045301 + B2_Mm2 SINE B2 47 191 -4 2 1741 570 110 11 0 chr4 151584814 151584905 -4045215 + URR1B DNA MER1_type 129 220 -5 2 1741 1270 41 0 0 chr4 151584906 151585052 -4045068 + B1_Mus2 SINE Alu 2 147 0 2 1741 1093 263 72 15 chr4 151585102 151585434 -4044686 + Tigger1 DNA MER2_type 952 1302 -1116 1 1741 244 318 0 120 chr4 151585442 151585542 -4044578 + PB1D10 SINE Alu 22 109 -8 2 1741 289 301 301 0 chr4 151585593 151585759 -4044361 + Tigger1 DNA MER2_type 1262 1477 -941 1 1741 430 340 81 16 chr4 151585771 151586094 -4044026 + Tigger1 DNA MER2_type 1597 1940 -478 1 1741 265 321 42 63 chr4 151586531 151586674 -4043446 - MLT1A1 LTR MaLR -267 141 2 2 1741 354 23 0 0 chr4 151586748 151586791 -4043329 + (GGGTG)n Simple_repeat Simple_repeat 4 46 0 2 1741 385 257 92 0 chr4 151586993 151587102 -4043018 + PB1D9 SINE Alu 2 120 0 2 1741 201 175 0 0 chr4 151588857 151588897 -4041223 + CT-rich Low_complexity Low_complexity 2 41 0 2 1741 3566 25 2 0 chr4 151589433 151589828 -4040292 - MTA_Mm LTR MaLR 0 396 1 2 1741 3684 41 16 0 chr4 151589828 151590315 -4039805 - MTA_Mm-int LTR MaLR 0 1098 604 2 1741 299 300 7 73 chr4 151590626 151590777 -4039343 - B1F1 SINE Alu -4 145 5 2 1741 256 299 150 0 chr4 151590827 151590954 -4039166 + MLT1A LTR MaLR 227 372 -2 2 1741 924 274 198 3 chr4 151592074 151592407 -4037713 - MTD LTR MaLR 0 419 22 2 1741 892 211 65 5 chr4 151593471 151593657 -4036463 + B3 SINE B2 13 209 -7 2 1741 1201 56 0 0 chr4 151594046 151594188 -4035932 + B1_Mm SINE Alu 1 142 -5 2 1741 267 104 0 0 chr4 151594190 151594238 -4035882 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 2 1741 204 97 0 0 chr4 151594259 151594290 -4035830 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1741 687 239 0 0 chr4 151594299 151594433 -4035687 - B3A SINE B2 -54 144 11 2 1741 440 244 64 43 chr4 151594468 151594589 -4035531 + B1_Mus1 SINE Alu 5 128 -20 2 1741 1164 205 15 0 chr4 151594589 151594794 -4035326 + B3 SINE B2 3 210 -6 2 1741 440 244 64 43 chr4 151594794 151594813 -4035307 + B1_Mus1 SINE Alu 129 147 -1 2 1741 504 0 0 0 chr4 151594913 151594969 -4035151 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 2 1741 2745 161 59 121 chr4 151597821 151598434 -4031686 - RMER15 LTR ERVL 0 575 1 2 1741 234 0 0 0 chr4 151598669 151598695 -4031425 + (GGGTG)n Simple_repeat Simple_repeat 3 28 0 2 1741 228 259 173 0 chr4 151598905 151598986 -4031134 - PB1D10 SINE Alu -22 95 1 2 1741 478 227 27 18 chr4 151599040 151599152 -4030968 - ID_B1 SINE B4 -10 214 102 2 1741 682 141 29 36 chr4 151599133 151599273 -4030847 - RLTR28 LTR ERVL -385 139 1 2 1741 369 43 0 0 chr4 151599274 151599321 -4030799 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 2 1741 1143 89 0 7 chr4 151599344 151599491 -4030629 - B1_Mus1 SINE Alu -2 146 1 2 1741 1077 156 11 0 chr4 151599594 151599773 -4030347 + URR1B DNA MER1_type 8 188 -37 2 1741 249 83 0 0 chr4 151599776 151599812 -4030308 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 2 1741 853 60 0 33 chr4 151599995 151600115 -4030005 + B2_Mm2 SINE B2 1 116 -79 2 1741 252 0 0 0 chr4 151601794 151601822 -4028298 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1741 1146 58 0 0 chr4 151601822 151601960 -4028160 - B1_Mus1 SINE Alu -10 138 1 2 1741 536 260 59 13 chr4 151601995 151602147 -4027973 - RSINE1 SINE B4 0 165 7 2 1741 272 224 0 17 chr4 151602189 151602248 -4027872 - PB1D7 SINE Alu -62 58 1 2 1741 871 214 91 5 chr4 151602270 151602467 -4027653 - B3 SINE B2 0 216 3 2 1741 733 181 16 0 chr4 151603184 151603311 -4026809 - B1_Mus2 SINE Alu 0 147 19 2 1741 387 212 20 10 chr4 151604604 151604704 -4025416 - RLTR10A LTR ERVK -164 247 147 2 1741 381 260 24 19 chr4 151605325 151605441 -4024679 + PB1D10 SINE Alu 7 120 0 2 1741 232 346 6 0 chr4 151605786 151605873 -4024247 - ID4 SINE ID -58 94 6 2 1741 200 61 0 57 chr4 151606329 151606364 -4023756 + (TCCCC)n Simple_repeat Simple_repeat 1 33 0 2 1741 279 307 149 133 chr4 151607362 151607550 -4022570 - MER2 DNA MER2_type -6 339 149 2 1741 247 243 29 0 chr4 151607607 151607663 -4022457 - PB1D10 SINE Alu -5 112 55 2 1741 1183 21 13 27 chr4 151607663 151607677 -4022443 - B1_Mm SINE Alu 0 147 136 2 1741 216 0 0 0 chr4 151607677 151607701 -4022419 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1741 1183 21 13 27 chr4 151607701 151607835 -4022285 - B1_Mm SINE Alu -12 135 1 2 1741 247 243 29 0 chr4 151607835 151607848 -4022272 - PB1D10 SINE Alu -63 54 42 2 1741 219 259 37 0 chr4 151608061 151608115 -4022005 - RSINE1 SINE B4 -93 72 17 2 1741 1261 34 0 0 chr4 151608327 151608473 -4021647 + B1_Mm SINE Alu 2 147 0 2 1741 337 290 25 21 chr4 151608810 151608968 -4021152 + ID_B1 SINE B4 1 157 -135 2 1741 225 204 20 0 chr4 151609008 151609057 -4021063 + B1F1 SINE Alu 92 141 -8 2 1741 493 285 26 59 chr4 151609136 151609230 -4020890 - RSINE1 SINE B4 -1 164 73 2 1741 1739 167 84 9 chr4 151609230 151609562 -4020558 - RLTR15 LTR ERVK -2 357 1 2 1741 493 285 26 59 chr4 151609562 151609620 -4020500 - RSINE1 SINE B4 -93 72 17 2 1741 238 279 150 29 chr4 151612341 151612481 -4017639 + MER113A DNA MER1_type 58 214 -100 2 1741 1050 143 63 0 chr4 151612483 151612658 -4017462 + B2_Mm2 SINE B2 1 186 -9 2 1741 281 191 88 0 chr4 151612667 151612735 -4017385 + B4 SINE B4 2 75 -217 2 1741 309 159 0 0 chr4 151613199 151613262 -4016858 + CT-rich Low_complexity Low_complexity 2 64 0 2 1741 717 113 0 0 chr4 151613314 151613420 -4016700 - B2_Mm2 SINE B2 -88 107 2 2 1741 180 0 0 0 chr4 151615228 151615248 -4014872 + (GGGTG)n Simple_repeat Simple_repeat 5 24 0 2 1741 483 60 0 0 chr4 151616717 151616784 -4013336 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1741 239 343 0 14 chr4 151616842 151616913 -4013207 - RSINE1 SINE B4 -95 70 1 2 1741 186 43 0 0 chr4 151616974 151616997 -4013123 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2 1741 981 143 8 4 chr4 151616998 151617262 -4012858 + (CTCA)n Simple_repeat Simple_repeat 1 265 0 2 1741 519 240 22 37 chr4 151617307 151617441 -4012679 - RSINE1 SINE B4 -31 134 3 2 1741 353 311 7 19 chr4 151617441 151617546 -4012574 - PB1 SINE Alu -47 102 3 2 1741 282 116 0 0 chr4 151619846 151619889 -4010231 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1741 217 279 14 42 chr4 151619889 151619960 -4010160 - RSINE1 SINE B4 -14 151 83 2 1741 212 269 118 0 chr4 151621176 151621269 -4008851 - B4 SINE B4 -183 109 6 2 1741 315 0 0 0 chr4 151621420 151621455 -4008665 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1741 323 167 50 0 chr4 151621513 151621573 -4008547 + RSINE1 SINE B4 35 97 -68 2 1741 239 377 104 86 chr4 151621590 151621695 -4008425 + MTE-int LTR MaLR 580 678 -902 2 1741 910 184 7 0 chr4 151621695 151621842 -4008278 + B1_Mur3 SINE Alu 2 149 0 2 1741 239 377 104 86 chr4 151621842 151622119 -4008001 + MTE-int LTR MaLR 679 969 -611 2 1741 854 124 29 0 chr4 151622510 151622647 -4007473 - B1_Mur4 SINE Alu -1 149 9 2 1741 857 121 255 0 chr4 151624663 151624812 -4005308 + B2_Mm1t SINE B2 1 187 -6 2 1741 231 65 65 0 chr4 151624815 151624861 -4005259 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1741 496 172 0 11 chr4 151625080 151625168 -4004952 + PB1D10 SINE Alu 24 110 -7 2 1741 472 289 94 22 chr4 151625179 151625317 -4004803 + RSINE1 SINE B4 2 149 -16 2 1741 526 316 31 12 chr4 151625379 151625539 -4004581 + RSINE1 SINE B4 3 165 0 2 1741 250 243 85 93 chr4 151625615 151625661 -4004459 - L1M2 LINE L1 -634 5657 5617 2 1741 2903 156 28 0 chr4 151625661 151626167 -4003953 - RLTR28 LTR ERVL -2 522 3 2 1741 250 243 85 93 chr4 151626167 151626238 -4003882 - L1M2 LINE L1 -675 5616 5541 2 1741 327 107 36 0 chr4 151626662 151626718 -4003402 + B1_Mus1 SINE Alu 2 59 -89 2 1741 644 130 9 0 chr4 151626720 151626835 -4003285 + (GGAA)n Simple_repeat Simple_repeat 4 119 0 2 1741 223 200 0 0 chr4 151626881 151626926 -4003194 - PB1D10 SINE Alu -2 115 71 2 1741 1873 168 58 26 chr4 151628296 151628644 -4001476 - RLTR15 LTR ERVK 0 359 1 2 1741 393 178 231 11 chr4 151629207 151629298 -4000822 + PB1D9 SINE Alu 10 120 0 2 1741 344 313 117 49 chr4 151630052 151630257 -3999863 - MLT1C LTR MaLR -1 466 248 2 1741 200 59 29 0 chr4 151631658 151631692 -3998428 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1741 567 186 133 0 chr4 151631714 151631827 -3998293 + B1_Mus1 SINE Alu 5 132 -16 2 1741 448 258 185 35 chr4 151632033 151632206 -3997914 + B3 SINE B2 3 201 -15 2 1741 1261 41 0 0 chr4 151632287 151632434 -3997686 - B1_Mus2 SINE Alu 0 147 1 2 1741 267 31 0 0 chr4 151633638 151633670 -3996450 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 2 1741 186 43 0 0 chr4 151635668 151635691 -3994429 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1741 236 137 0 38 chr4 151638032 151638085 -3992035 + G-rich Low_complexity Low_complexity 1 51 0 2 1741 924 157 76 38 chr4 151639388 151639573 -3990547 - B2_Mm2 SINE B2 -2 193 2 2 1741 186 43 0 0 chr4 151640729 151640752 -3989368 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 2 1741 213 39 0 0 chr4 151643455 151643481 -3986639 + (GGA)n Simple_repeat Simple_repeat 3 28 0 2 1741 226 286 29 0 chr4 151643563 151643633 -3986487 - MIRm SINE MIR -135 141 70 2 1741 1000 125 7 0 chr4 151644434 151644578 -3985542 + B1_Mus2 SINE Alu 2 146 -1 2 1741 183 42 0 0 chr4 151646488 151646512 -3983608 + (TATG)n Simple_repeat Simple_repeat 4 27 0 3 1741 24 53 0 0 chr4 151648149 151648187 -3981933 + GC_rich Low_complexity Low_complexity 1 38 0 3 1741 24 85 0 0 chr4 151648353 151648412 -3981708 + GC_rich Low_complexity Low_complexity 1 59 0 3 1742 457 226 0 47 chr4 151650395 151650502 -3979618 + B1_Mur2 SINE Alu 40 141 -8 3 1742 180 0 0 0 chr4 151651348 151651368 -3978752 + (GGAGA)n Simple_repeat Simple_repeat 4 23 0 3 1742 219 192 75 19 chr4 151651408 151651461 -3978659 + PB1D10 SINE Alu 30 85 -32 3 1742 436 266 52 17 chr4 151651500 151651615 -3978505 + B1_Mur2 SINE Alu 30 148 -1 3 1742 717 275 119 0 chr4 151651617 151651810 -3978310 + B3 SINE B2 1 216 0 3 1742 1563 43 21 0 chr4 151651892 151652078 -3978042 + B2_Mm1a SINE B2 2 191 -2 3 1742 734 186 95 9 chr4 151652099 151652276 -3977844 + B3A SINE B2 3 174 -21 3 1742 1239 117 26 21 chr4 151652276 151652468 -3977652 + B2_Mm2 SINE B2 3 195 0 3 1742 575 223 35 71 chr4 151652468 151652488 -3977632 + B2_Mm2 SINE B2 175 193 -2 3 1742 350 124 0 5 chr4 151652510 151652575 -3977545 - B2_Mm2 SINE B2 -107 109 47 3 1742 1355 74 11 6 chr4 151652640 151652817 -3977303 - B2_Mm1t SINE B2 -14 179 2 3 1742 486 279 107 18 chr4 151655010 151655178 -3974942 + B3 SINE B2 21 203 -13 3 1742 351 242 32 0 chr4 151655108 151655203 -3974917 - RLTR21 LTR ERVK -318 1254 1157 3 1742 285 234 0 0 chr4 151655274 151655338 -3974782 - MIRm SINE MIR -125 151 88 3 1742 236 157 39 0 chr4 151656705 151656756 -3973364 + CT-rich Low_complexity Low_complexity 2 54 0 3 1742 233 250 62 0 chr4 151658189 151658253 -3971867 + MIR SINE MIR 116 183 -79 3 1742 189 0 0 0 chr4 151659376 151659397 -3970723 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1742 276 209 60 0 chr4 151661364 151661431 -3968689 + GA-rich Low_complexity Low_complexity 1 71 0 3 1742 530 231 145 0 chr4 151662931 151663048 -3967072 + B1_Mus2 SINE Alu 1 134 -13 3 1742 1006 0 0 109 chr4 151663068 151663269 -3966851 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1742 1034 0 0 108 chr4 151663305 151663808 -3966312 + (CAGAGA)n Simple_repeat Simple_repeat 1 448 0 3 1742 302 0 26 0 chr4 151665969 151666007 -3964113 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1742 322 176 140 18 chr4 151667253 151667379 -3962741 + B3A SINE B2 1 119 -79 3 1742 394 297 161 6 chr4 151668620 151668933 -3961187 + MTD LTR MaLR 1 405 -14 3 1742 385 245 188 40 chr4 151669067 151669114 -3961006 - MTD LTR MaLR -158 261 210 3 1742 519 31 0 0 chr4 151669121 151669186 -3960934 + (TTTC)n Simple_repeat Simple_repeat 1 65 0 3 1742 1361 88 11 6 chr4 151669186 151669361 -3960759 - B2_Mm1t SINE B2 -16 177 1 3 1742 385 254 172 46 chr4 151669361 151669503 -3960617 - MTD LTR MaLR -210 209 19 3 1742 522 285 0 48 chr4 151669976 151670142 -3959978 + ID_B1 SINE B4 65 222 -2 3 1742 576 285 57 36 chr4 151670164 151670751 -3959369 + RMER17D LTR ERVK 77 473 -416 3 1742 200 236 64 58 chr4 151671696 151671867 -3958253 + (CCGGA)n Simple_repeat Simple_repeat 3 174 0 3 1742 324 316 13 0 chr4 151673325 151673404 -3956716 - LFSINE_Vert SINE SINE -376 83 4 3 1742 343 278 44 0 chr4 151674921 151675011 -3955109 - PB1D10 SINE Alu 0 117 24 3 1742 212 234 0 21 chr4 151676432 151676480 -3953640 + MIRb SINE MIR 210 256 -12 3 1742 360 0 0 0 chr4 151676653 151676693 -3953427 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1742 180 0 0 0 chr4 151679911 151679931 -3950189 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1742 21 0 0 0 chr4 151681144 151681165 -3948955 + AT_rich Low_complexity Low_complexity 1 21 0 3 1742 1018 144 11 22 chr4 151681224 151681402 -3948718 + URR1A DNA MER1_type 51 226 0 3 1742 314 218 161 0 chr4 151681497 151681584 -3948536 - RSINE1 SINE B4 -62 103 3 3 1742 234 328 85 62 chr4 151682058 151682188 -3947932 - B1F1 SINE Alu -1 148 16 3 1742 365 283 153 25 chr4 151682186 151682349 -3947771 - B4 SINE B4 0 292 109 3 1742 386 222 0 122 chr4 151682358 151682432 -3947688 - B1_Mur2 SINE Alu 0 149 84 3 1742 189 0 0 0 chr4 151682432 151682453 -3947667 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1742 386 222 0 122 chr4 151682453 151682501 -3947619 - B1_Mur2 SINE Alu -66 83 42 3 1742 198 0 0 0 chr4 151682525 151682547 -3947573 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 1742 282 179 14 95 chr4 151682552 151682626 -3947494 - PB1 SINE Alu -51 76 9 3 1742 800 203 14 0 chr4 151683644 151683787 -3946333 + B1_Mus2 SINE Alu 1 145 -2 3 1742 204 40 0 0 chr4 151684122 151684147 -3945973 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 3 1742 677 173 14 57 chr4 151684794 151684935 -3945185 - B1_Mur1 SINE Alu -6 143 9 3 1742 243 229 84 14 chr4 151685302 151685373 -3944747 - PB1D7 SINE Alu -2 118 43 3 1742 423 0 0 0 chr4 151688311 151688358 -3941762 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1742 799 331 48 7 chr4 151688395 151688666 -3941454 - B4A SINE B4 -2 290 9 3 1742 589 37 0 47 chr4 151688669 151688681 -3941439 - B1_Mur4 SINE Alu 0 150 142 3 1742 312 70 0 0 chr4 151688681 151688724 -3941396 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1742 589 76 2 45 chr4 151688724 151688818 -3941302 - B1_Mur4 SINE Alu -9 141 46 3 1742 522 275 0 8 chr4 151688830 151688951 -3941169 - ID_B1 SINE B4 -1 223 104 3 1742 214 328 62 0 chr4 151690407 151690471 -3939649 - B3A SINE B2 -121 77 10 3 1742 717 190 240 6 chr4 151690522 151690697 -3939423 + B3 SINE B2 1 216 0 3 1742 23 0 0 0 chr4 151690787 151690810 -3939310 + AT_rich Low_complexity Low_complexity 1 23 0 3 1742 1192 136 11 6 chr4 151690812 151690990 -3939130 + B2_Mm1t SINE B2 1 179 -14 3 1742 321 155 0 0 chr4 151691036 151691094 -3939026 + B2_Mm2 SINE B2 47 104 -91 3 1742 22 0 0 0 chr4 151691125 151691147 -3938973 + AT_rich Low_complexity Low_complexity 1 22 0 3 1742 216 0 0 0 chr4 151693471 151693495 -3936625 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 1742 1621 21 21 0 chr4 151693511 151693699 -3936421 - B2_Mm1a SINE B2 -1 192 1 3 1742 538 204 220 0 chr4 151693954 151694086 -3936034 - RSINE1 SINE B4 -3 162 2 3 1742 1209 29 0 0 chr4 151694257 151694393 -3935727 + B1_Mus1 SINE Alu 1 136 -12 3 1742 249 57 0 0 chr4 151694393 151694428 -3935692 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1742 1313 88 38 6 chr4 151694557 151694740 -3935380 - B2_Mm2 SINE B2 -6 189 1 3 1742 1486 64 16 0 chr4 151694742 151694930 -3935190 - B2_Mm2 SINE B2 -1 194 4 3 1742 1055 182 50 5 chr4 151694936 151695135 -3934985 - B3 SINE B2 -5 211 4 3 1742 479 270 0 9 chr4 151695154 151695266 -3934854 - PB1D10 SINE Alu 0 117 7 3 1742 191 171 24 0 chr4 151695567 151695608 -3934512 - L2a LINE L2 -354 3072 3031 3 1742 270 283 0 0 chr4 151696179 151696239 -3933881 + RSINE1 SINE B4 3 62 -103 3 1742 617 162 0 7 chr4 151696241 151696396 -3933724 + (CA)n Simple_repeat Simple_repeat 2 155 0 3 1742 554 275 99 0 chr4 151696414 151696585 -3933535 + B3A SINE B2 7 194 -4 3 1742 1027 92 57 0 chr4 151696591 151696732 -3933388 + B1_Mur4 SINE Alu 2 150 0 3 1742 214 264 19 179 chr4 151697490 151697596 -3932524 - B1F2 SINE Alu -60 89 1 3 1742 225 0 0 0 chr4 151697606 151697631 -3932489 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1742 1209 62 0 0 chr4 151697631 151697775 -3932345 - B1_Mus2 SINE Alu -2 145 2 3 1742 225 0 0 0 chr4 151697785 151697810 -3932310 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1742 1243 47 0 0 chr4 151697810 151697958 -3932162 - B1_Mus1 SINE Alu 0 148 1 3 1742 210 105 0 0 chr4 151697990 151698028 -3932092 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1742 348 292 40 40 chr4 151698042 151698167 -3931953 + RSINE1 SINE B4 12 136 -29 3 1742 257 256 291 0 chr4 151698228 151698314 -3931806 + RSINE1 SINE B4 1 111 -54 3 1742 331 294 37 110 chr4 151698663 151698827 -3931293 + ID_B1 SINE B4 63 214 -10 3 1742 486 205 20 102 chr4 151698690 151698837 -3931283 + B1F SINE Alu 15 149 0 3 1742 500 178 17 171 chr4 151699404 151699580 -3930540 - B1_Mur1 SINE Alu 0 149 1 3 1742 230 0 0 32 chr4 151701509 151701540 -3928580 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1742 534 238 155 42 chr4 151702120 151702313 -3927807 - B3 SINE B2 0 216 2 3 1742 21 0 0 0 chr4 151702658 151702679 -3927441 + AT_rich Low_complexity Low_complexity 1 21 0 3 1742 1170 35 35 0 chr4 151702679 151702820 -3927300 - B1_Mus2 SINE Alu -1 146 1 3 1742 308 123 35 16 chr4 151702868 151702929 -3927191 + B1_Mur4 SINE Alu 7 69 -81 3 1742 451 299 8 0 chr4 151702949 151703066 -3927054 - B3 SINE B2 -47 169 52 3 1742 401 307 53 119 chr4 151703023 151703092 -3927028 - B4 SINE B4 -4 288 183 3 1742 891 42 0 16 chr4 151703092 151703213 -3926907 - B1_Mus2 SINE Alu 0 147 29 3 1742 401 307 53 119 chr4 151703213 151703326 -3926794 - B4 SINE B4 -4 182 6 3 1742 282 314 137 0 chr4 151703887 151703989 -3926131 + RSINE1 SINE B4 44 159 -6 3 1742 242 267 67 0 chr4 151704344 151704419 -3925701 - B3A SINE B2 -108 90 11 3 1742 847 60 0 0 chr4 151704428 151704544 -3925576 - B1_Mus2 SINE Alu 0 147 32 3 1742 294 258 0 92 chr4 151705472 151705587 -3924533 - B1F2 SINE Alu -11 138 35 3 1742 266 300 100 0 chr4 151707407 151707477 -3922643 + ID4_ SINE ID 5 81 -2 3 1742 489 230 248 6 chr4 151709248 151709432 -3920688 + B4A SINE B4 1 229 -63 3 1742 537 222 9 0 chr4 151709432 151709540 -3920580 + B3 SINE B2 1 109 -107 3 1742 996 161 0 0 chr4 151709601 151709744 -3920376 + B1_Mur3 SINE Alu 2 144 -5 4 1742 399 333 38 0 chr4 151709763 151709895 -3920225 + RSINE1 SINE B4 10 146 -19 4 1742 1143 63 21 0 chr4 151710392 151710535 -3919585 + B1_Mus2 SINE Alu 1 146 -1 4 1742 21 0 0 0 chr4 151710735 151710756 -3919364 + AT_rich Low_complexity Low_complexity 1 21 0 4 1742 263 28 28 0 chr4 151712211 151712247 -3917873 + (TGGG)n Simple_repeat Simple_repeat 3 39 0 4 1742 26 107 0 0 chr4 151712748 151712851 -3917269 + GC_rich Low_complexity Low_complexity 1 103 0 4 1742 214 239 8 81 chr4 151713232 151713355 -3916765 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 4 1742 22 56 0 0 chr4 151713385 151713421 -3916699 + GC_rich Low_complexity Low_complexity 1 36 0 4 1742 489 342 46 34 chr4 151715429 151715668 -3914452 + MIRb SINE MIR 1 242 -26 4 1742 1077 234 23 15 chr4 151716173 151716655 -3913465 + (TCCA)n Simple_repeat Simple_repeat 1 486 0 4 1742 348 288 36 9 chr4 151716713 151716825 -3913295 - B1F SINE Alu 0 149 35 4 1742 424 279 27 0 chr4 151718172 151718283 -3911837 - PB1D10 SINE Alu -3 114 1 4 1742 180 0 0 0 chr4 151718572 151718592 -3911528 + (CGGGG)n Simple_repeat Simple_repeat 5 24 0 4 1742 411 38 0 0 chr4 151719190 151719243 -3910877 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1742 453 284 43 36 chr4 151721050 151721189 -3908931 - B4A SINE B4 0 292 153 4 1742 917 156 13 26 chr4 151721399 151721550 -3908570 + B1_Mur4 SINE Alu 2 150 0 4 1742 459 92 0 0 chr4 151723244 151723309 -3906811 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1742 307 261 122 22 chr4 151725094 151725184 -3904936 - B1_Mur1 SINE Alu -5 144 46 4 1742 600 27 0 0 chr4 151726305 151726379 -3903741 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1742 357 149 0 0 chr4 151727730 151727797 -3902323 + (GAA)n Simple_repeat Simple_repeat 2 68 0 4 1742 234 256 38 25 chr4 151729101 151729181 -3900939 - MIRb SINE MIR -129 139 59 4 1742 575 262 186 0 chr4 151729192 151729364 -3900756 + B3 SINE B2 1 204 -12 4 1742 1263 41 0 0 chr4 151729368 151729514 -3900606 + B1_Mm SINE Alu 1 146 -1 4 1742 775 178 59 0 chr4 151729514 151729649 -3900471 + B1_Mur2 SINE Alu 5 147 -2 4 1742 1179 62 0 14 chr4 151732292 151732428 -3897692 + B1_Mus2 SINE Alu 2 137 -10 4 1742 207 0 0 0 chr4 151732428 151732451 -3897669 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1742 366 243 0 0 chr4 151732728 151732831 -3897289 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1742 228 245 26 105 chr4 151733114 151733228 -3896892 + MLT2E LTR ERVL 268 372 -256 4 1742 546 190 99 0 chr4 151734285 151734406 -3895714 - B1_Mur1 SINE Alu 0 149 17 4 1742 217 135 0 37 chr4 151734446 151734500 -3895620 + C-rich Low_complexity Low_complexity 1 52 0 4 1742 238 293 0 0 chr4 151734927 151735009 -3895111 + GA-rich Low_complexity Low_complexity 3 84 0 4 1742 243 192 93 27 chr4 151735437 151735512 -3894608 - ID4 SINE ID 0 83 4 4 1742 784 206 0 7 chr4 151738267 151738404 -3891716 + B1_Mur3 SINE Alu 5 140 -9 4 1742 830 253 0 31 chr4 151738429 151738625 -3891495 + B3 SINE B2 25 214 -2 4 1742 180 77 0 0 chr4 151738625 151738651 -3891469 + (CATA)n Simple_repeat Simple_repeat 1 26 0 4 1742 615 201 57 7 chr4 151738653 151738793 -3891327 - B1_Mur1 SINE Alu 0 149 3 4 1742 270 0 0 0 chr4 151738808 151738838 -3891282 + (TAA)n Simple_repeat Simple_repeat 2 31 0 4 1742 218 278 70 30 chr4 151738840 151738940 -3891180 - MIR3 SINE MIR -92 116 13 4 1742 411 238 0 0 chr4 151740734 151740814 -3889306 - B1_Mus2 SINE Alu -61 86 7 4 1742 508 304 105 30 chr4 151740851 151741051 -3889069 + ID_B1 SINE B4 2 216 -8 4 1742 182 314 152 0 chr4 151741216 151741334 -3888786 - L2b LINE L2 -212 3163 3028 4 1742 182 303 65 13 chr4 151742076 151742153 -3887967 - L4 LINE RTE -1294 735 655 4 1742 228 272 45 80 chr4 151742641 151742729 -3887391 - MER5A1 DNA MER1_type -38 128 44 4 1742 365 263 22 102 chr4 151742722 151742865 -3887255 + B4A SINE B4 10 134 -90 4 1742 721 294 78 4 chr4 151742957 151743213 -3886907 + Lx7 LINE L1 6980 7254 -442 4 1742 307 240 40 0 chr4 151743458 151743533 -3886587 + RSINE1 SINE B4 87 164 -1 4 1742 881 83 0 58 chr4 151743561 151743752 -3886368 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1742 821 101 0 38 chr4 151743784 151743970 -3886150 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1742 758 105 29 11 chr4 151744001 151744175 -3885945 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1742 288 287 208 13 chr4 151744175 151744334 -3885786 - B4A SINE B4 -70 222 33 4 1742 243 0 0 0 chr4 151748131 151748158 -3881962 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1742 469 217 38 0 chr4 151748704 151748810 -3881310 - PB1D10 SINE Alu -2 115 6 4 1742 316 244 63 74 chr4 151748724 151748849 -3881271 - ID_B1 SINE B4 -49 175 56 4 1742 255 230 15 80 chr4 151753336 151753473 -3876647 + (CCCCAG)n Simple_repeat Simple_repeat 5 132 0 4 1742 3159 47 50 0 chr4 151754743 151755124 -3874996 - MTB LTR MaLR 0 400 1 4 1742 439 312 140 57 chr4 151755947 151756212 -3873908 + B4A SINE B4 1 287 -5 4 1742 1645 37 0 0 chr4 151757996 151758185 -3871935 - B2_Mm1a SINE B2 -3 190 2 4 1742 285 29 0 0 chr4 151760315 151760349 -3869771 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1742 224 370 0 0 chr4 151760414 151760533 -3869587 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 1742 189 363 10 52 chr4 151762856 151762952 -3867168 + MIRm SINE MIR 99 190 -86 4 1742 180 0 0 0 chr4 151769145 151769165 -3860955 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1742 230 211 22 4 chr4 151769823 151769881 -3860239 + MIRc SINE MIR 113 170 -38 4 1742 192 398 38 19 chr4 151770455 151770560 -3859560 + MIRb SINE MIR 87 193 -75 4 1742 284 0 0 27 chr4 151770794 151770831 -3859289 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1742 1689 21 0 20 chr4 151771850 151772047 -3858073 + B2_Mm1a SINE B2 1 193 0 4 1742 333 0 0 0 chr4 151774504 151774541 -3855579 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1742 446 218 5 2 chr4 151776333 151776432 -3853688 - PB1D10 SINE Alu -7 113 13 4 1742 201 74 0 0 chr4 151776509 151776536 -3853584 + (TCC)n Simple_repeat Simple_repeat 2 28 0 4 1742 653 319 57 0 chr4 151776536 151776746 -3853374 - ID_B1 SINE B4 -1 223 2 4 1742 275 244 108 32 chr4 151777326 151777419 -3852701 + ORR1C2 LTR MaLR 285 384 0 4 1742 229 278 27 14 chr4 151777588 151777661 -3852459 - MIR3 SINE MIR -47 161 88 4 1742 252 0 0 0 chr4 151777808 151777836 -3852284 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1742 324 0 0 0 chr4 151777836 151777871 -3852249 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1742 218 261 94 42 chr4 151778132 151778228 -3851892 - PB1D7 SINE Alu -14 106 6 4 1742 500 230 138 26 chr4 151778143 151778295 -3851825 - ID_B1 SINE B4 -54 170 2 4 1742 214 344 0 0 chr4 151779209 151779273 -3850847 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 4 1743 316 291 92 109 chr4 151781561 151781800 -3848320 + MLT1C LTR MaLR 1 235 -232 4 1743 351 183 151 0 chr4 151783182 151783275 -3846845 + ID_B1 SINE B4 116 222 -2 4 1743 999 221 15 5 chr4 151783339 151783544 -3846576 + B3 SINE B2 10 216 0 4 1743 314 321 0 0 chr4 151783559 151783640 -3846480 - PB1D10 SINE Alu -7 110 30 4 1743 306 125 0 0 chr4 151783660 151783708 -3846412 + (CTCA)n Simple_repeat Simple_repeat 1 48 0 4 1743 953 102 21 21 chr4 151783711 151783852 -3846268 - B1_Mur4 SINE Alu -8 142 2 4 1743 251 319 45 65 chr4 151783965 151784119 -3846001 - MER58B DNA MER1_type -13 328 178 4 1743 387 0 0 0 chr4 151784119 151784162 -3845958 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1743 334 278 158 92 chr4 151784376 151784649 -3845471 - B4A SINE B4 0 292 2 4 1743 195 42 0 0 chr4 151784805 151784829 -3845291 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1743 844 147 0 22 chr4 151787271 151787410 -3842710 - B1_Mur2 SINE Alu 0 149 14 4 1743 445 239 0 11 chr4 151787418 151787511 -3842609 + PB1D7 SINE Alu 29 120 0 4 1743 1282 214 74 62 chr4 151787869 151788017 -3842103 - MTD LTR MaLR -65 354 211 4 1743 1466 83 5 5 chr4 151788017 151788210 -3841910 - B2_Mm2 SINE B2 -1 194 2 4 1743 1282 214 74 62 chr4 151788210 151788400 -3841720 - MTD LTR MaLR -209 210 12 4 1743 194 182 0 0 chr4 151788626 151788659 -3841461 - MIRm SINE MIR -195 81 49 4 1743 180 0 0 0 chr4 151789848 151789868 -3840252 + (GGA)n Simple_repeat Simple_repeat 1 20 0 4 1743 238 394 7 22 chr4 151790245 151790380 -3839740 - RMER12 LTR ERVK -466 856 724 4 1743 555 225 11 11 chr4 151790482 151790662 -3839458 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1743 381 234 28 22 chr4 151790702 151790881 -3839239 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1743 297 0 0 0 chr4 151793267 151793300 -3836820 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 4 1743 764 255 43 29 chr4 151793338 151793548 -3836572 - B4A SINE B4 -78 214 2 4 1743 1153 82 7 0 chr4 151794497 151794644 -3835476 - B1_Mus1 SINE Alu 0 148 1 4 1743 333 273 0 0 chr4 151794679 151794807 -3835313 + (TG)n Simple_repeat Simple_repeat 1 128 0 4 1743 730 256 22 11 chr4 151794807 151794985 -3835135 - B3A SINE B2 -16 182 3 4 1743 715 307 82 32 chr4 151795200 151795604 -3834516 + L1MB7 LINE L1 5632 6055 -129 4 1743 506 256 7 43 chr4 151795656 151795795 -3834325 - RSINE1 SINE B4 -28 137 4 4 1743 332 319 40 60 chr4 151795999 151796170 -3833950 - MIR SINE MIR -67 201 37 4 1743 2021 107 26 10 chr4 151796221 151796532 -3833588 - MTC LTR MaLR -26 395 80 5 1743 418 128 186 0 chr4 151796566 151796652 -3833468 - B1_Mus1 SINE Alu -16 132 31 5 1743 228 160 0 91 chr4 151797045 151797100 -3833020 - MTC LTR MaLR -345 76 27 5 1743 298 299 180 11 chr4 151797359 151797512 -3832608 - MLT1C LTR MaLR -35 470 322 5 1743 184 222 22 0 chr4 151797818 151797863 -3832257 + L2c LINE L2 3113 3158 -229 5 1743 420 254 75 55 chr4 151798374 151798520 -3831600 + MER53 DNA hAT 45 193 0 5 1743 846 197 211 11 chr4 151798981 151799161 -3830959 - B3 SINE B2 0 216 1 5 1743 531 291 70 27 chr4 151799161 151799348 -3830772 - B3A SINE B2 -3 195 1 5 1743 396 0 0 0 chr4 151801354 151801398 -3828722 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1743 208 196 0 89 chr4 151801484 151801540 -3828580 + MIRm SINE MIR 217 267 -9 5 1743 243 0 0 0 chr4 151801619 151801646 -3828474 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1743 515 184 6 0 chr4 151801646 151801799 -3828321 + GA-rich Low_complexity Low_complexity 10 163 0 5 1743 520 108 45 23 chr4 151801846 151801979 -3828141 + (CAGA)n Simple_repeat Simple_repeat 1 136 0 5 1743 185 35 0 65 chr4 151803957 151803988 -3826132 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 5 1743 393 22 0 0 chr4 151804135 151804181 -3825939 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1743 534 192 240 5 chr4 151805787 151805982 -3824138 + ORR1D2 LTR MaLR 83 370 0 5 1743 379 316 115 103 chr4 151806303 151806564 -3823556 + MTEa LTR MaLR 113 376 -3 5 1743 336 267 0 0 chr4 151808258 151808333 -3821787 - ID4 SINE ID -5 78 4 5 1743 1012 133 4 4 chr4 151808609 151808882 -3821238 + (GGA)n Simple_repeat Simple_repeat 1 273 0 5 1743 267 275 115 58 chr4 151810340 151810479 -3819641 + MLT1F2 LTR MaLR 42 188 -372 5 1743 390 342 104 47 chr4 151810497 151810795 -3819325 + MLT1F2 LTR MaLR 230 544 -16 5 1743 497 267 40 91 chr4 151811202 151811260 -3818860 + B4A SINE B4 45 209 -83 5 1743 1050 22 8 0 chr4 151811260 151811394 -3818726 + B1_Mm SINE Alu 13 147 0 5 1743 201 74 0 0 chr4 151811401 151811428 -3818692 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1743 664 258 101 40 chr4 151811893 151812091 -3818029 - B4A SINE B4 0 292 83 5 1743 428 216 0 126 chr4 151812101 151812228 -3817892 - PB1D9 SINE Alu -7 113 3 5 1743 332 280 59 93 chr4 151812278 151812396 -3817724 - B4 SINE B4 -177 115 2 5 1743 344 238 57 9 chr4 151813175 151813281 -3816839 - MER5A DNA MER1_type -78 111 1 5 1743 261 242 76 0 chr4 151813319 151813385 -3816735 + MER58A DNA MER1_type 26 96 -128 5 1743 562 226 158 38 chr4 151813694 151813878 -3816242 - ID_B1 SINE B4 -16 208 3 5 1743 297 348 44 6 chr4 151814503 151814662 -3815458 + L2 LINE L2 2721 2885 -534 5 1743 1640 52 0 0 chr4 151815422 151815614 -3814506 + B2_Mm1t SINE B2 1 192 -1 5 1743 222 62 0 0 chr4 151815615 151815647 -3814473 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1743 246 271 70 63 chr4 151816764 151816906 -3813214 - L1MC4a LINE L1 -176 7706 7564 5 1743 201 39 0 0 chr4 151816954 151816980 -3813140 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1743 217 347 48 0 chr4 151817056 151817106 -3813014 - ID_B1 SINE B4 -92 132 3 5 1743 275 238 16 0 chr4 151817111 151817174 -3812946 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 5 1743 617 196 0 4 chr4 151817720 151818251 -3811869 + (CA)n Simple_repeat Simple_repeat 1 528 0 5 1743 311 115 0 19 chr4 151818254 151818307 -3811813 + HAL1-3A_ME LINE L1 1976 2027 -831 5 1743 642 184 0 0 chr4 151818318 151818497 -3811623 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1743 232 217 25 117 chr4 151819561 151819666 -3810454 + RMER17A LTR ERVK 320 415 -336 5 1743 902 195 0 0 chr4 151819666 151819815 -3810305 - B1_Mur3 SINE Alu 0 149 1 5 1743 232 217 25 117 chr4 151819815 151819871 -3810249 + RMER17A LTR ERVK 416 466 -285 5 1743 1141 237 54 15 chr4 151820856 151821117 -3809003 - B4A SINE B4 -14 278 8 5 1743 1270 27 7 0 chr4 151823238 151823384 -3806736 - B1_Mm SINE Alu 0 147 1 5 1743 187 186 70 0 chr4 151823515 151823558 -3806562 - MIRb SINE MIR -196 72 27 5 1743 21 0 0 0 chr4 151823978 151823999 -3806121 + GC_rich Low_complexity Low_complexity 1 21 0 5 1743 744 203 36 0 chr4 151824600 151824738 -3805382 + B1_Mur2 SINE Alu 2 144 -5 5 1743 1208 198 9 13 chr4 151824791 151825016 -3805104 + ID_B1 SINE B4 1 224 0 5 1743 611 292 110 13 chr4 151825195 151825466 -3804654 + L1MB2 LINE L1 5305 5597 -574 5 1743 213 94 0 0 chr4 151825466 151825498 -3804622 + (CATG)n Simple_repeat Simple_repeat 1 32 0 5 1743 611 292 110 13 chr4 151825498 151825535 -3804585 + L1MB2 LINE L1 5598 5642 -529 5 1743 991 258 48 48 chr4 151825571 151825864 -3804256 + ORR1E LTR MaLR 62 354 -5 5 1743 395 241 271 20 chr4 151825876 151826075 -3804045 + L1MB2 LINE L1 5655 5903 -268 5 1743 955 194 222 13 chr4 151826660 151826961 -3803159 - MTD LTR MaLR -20 399 4 5 1743 487 335 100 30 chr4 151827917 151828246 -3801874 - MLT1A LTR MaLR 0 374 23 5 1743 444 247 8 5 chr4 151828581 151828694 -3801426 + B4A SINE B4 5 118 -174 5 1743 225 0 0 0 chr4 151828708 151828733 -3801387 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1743 507 69 0 0 chr4 151828733 151828805 -3801315 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1743 376 249 513 53 chr4 151829810 151830009 -3800111 + B4 SINE B4 1 290 -2 5 1743 428 246 74 25 chr4 151830127 151830248 -3799872 - MER58A DNA MER1_type -97 127 1 5 1743 843 204 14 0 chr4 151830278 151830425 -3799695 + B1_Mur3 SINE Alu 1 149 0 5 1743 189 325 61 9 chr4 151831394 151831509 -3798611 - MIR SINE MIR -98 164 44 5 1743 519 289 0 0 chr4 151832527 151832769 -3797351 + (CA)n Simple_repeat Simple_repeat 1 242 0 5 1743 318 87 0 0 chr4 151832785 151832831 -3797289 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1743 292 352 19 0 chr4 151832835 151832997 -3797123 + (CCA)n Simple_repeat Simple_repeat 1 165 0 5 1743 345 374 0 6 chr4 151833079 151833259 -3796861 + (CCA)n Simple_repeat Simple_repeat 2 180 0 5 1743 393 311 0 24 chr4 151833271 151833480 -3796640 + (CACCAT)n Simple_repeat Simple_repeat 1 204 0 5 1743 428 345 0 6 chr4 151833381 151833559 -3796561 + (CCA)n Simple_repeat Simple_repeat 3 179 0 5 1743 279 330 11 17 chr4 151833672 151833848 -3796272 + (CACCAT)n Simple_repeat Simple_repeat 2 176 0 5 1743 655 194 70 0 chr4 151835331 151835460 -3794660 + B1_Mur1 SINE Alu 7 144 -5 5 1743 345 24 0 0 chr4 151838257 151838299 -3791821 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1743 216 67 0 0 chr4 151838329 151838359 -3791761 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1743 183 42 0 0 chr4 151838389 151838413 -3791707 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1743 216 0 0 0 chr4 151838443 151838467 -3791653 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1743 375 333 122 45 chr4 151838505 151838923 -3791197 + MLT1C LTR MaLR 11 460 -7 5 1743 299 270 210 24 chr4 151838921 151839088 -3791032 - MER44D DNA MER2_type -26 679 482 5 1743 931 182 0 0 chr4 151839806 151839949 -3790171 + B1_Mur2 SINE Alu 1 143 -6 5 1743 348 316 89 38 chr4 151840415 151840573 -3789547 - Charlie12 DNA MER1_type -2699 174 9 5 1743 3081 174 51 15 chr4 151845292 151845958 -3784162 + RMER6C LTR ERVK 1 690 0 5 1743 426 355 72 21 chr4 151846866 151847102 -3783018 - ORR1E LTR MaLR -24 335 88 5 1743 315 0 0 0 chr4 151847637 151847672 -3782448 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 5 1743 287 269 0 15 chr4 151847807 151847875 -3782245 + MLT1A1 LTR MaLR 340 406 -2 5 1743 202 333 8 24 chr4 151851321 151851447 -3778673 + G-rich Low_complexity Low_complexity 4 127 0 5 1743 2639 135 13 19 chr4 151853427 151853894 -3776226 + RLTR28 LTR ERVL 59 522 -2 5 1743 321 312 150 24 chr4 151854996 151855209 -3774911 - MLT1D LTR MaLR -69 436 197 5 1743 297 389 51 48 chr4 151855891 151856247 -3773873 - Charlie1 DNA MER1_type -35 2746 2390 5 1743 365 287 136 32 chr4 151856301 151856456 -3773664 - ID_B1 SINE B4 -28 196 26 5 1743 556 220 296 21 chr4 151856768 151857283 -3772837 + RMER1B Other Other 283 1066 0 5 1743 215 125 25 0 chr4 151857283 151857323 -3772797 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 5 1743 579 238 110 14 chr4 151859663 151859861 -3770259 - B3A SINE B2 -2 214 9 5 1743 381 246 0 0 chr4 151860009 151860180 -3769940 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1743 767 219 14 0 chr4 151860251 151860397 -3769723 - B1_Mur1 SINE Alu -1 148 1 5 1743 506 245 0 68 chr4 151860405 151860523 -3769597 - PB1D10 SINE Alu -7 110 1 5 1743 1820 42 0 0 chr4 151860605 151860822 -3769298 + L1Md_T LINE L1 6366 6582 0 5 1743 464 355 80 21 chr4 151861610 151861935 -3768185 - MER74A LTR ERVL -203 355 12 5 1743 241 280 140 77 chr4 151862047 151862190 -3767930 + L2a LINE L2 3275 3426 0 5 1743 301 384 54 39 chr4 151863376 151863636 -3766484 - MTEb LTR MaLR -115 264 1 5 1743 192 40 0 0 chr4 151864004 151864029 -3766091 + (AGGGGG)n Simple_repeat Simple_repeat 6 30 0 5 1743 188 299 0 43 chr4 151865008 151865078 -3765042 - MIRm SINE MIR -93 183 117 5 1743 200 97 0 31 chr4 151865360 151865392 -3764728 + (TGGGGG)n Simple_repeat Simple_repeat 1 31 0 5 1743 374 94 0 15 chr4 151866015 151866080 -3764040 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1743 198 0 0 0 chr4 151867036 151867058 -3763062 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 5 1743 745 174 18 11 chr4 151867808 151868083 -3762037 + (TG)n Simple_repeat Simple_repeat 1 276 0 5 1743 392 263 65 77 chr4 151868210 151868379 -3761741 - B4A SINE B4 -123 169 3 5 1743 203 241 12 0 chr4 151870196 151870279 -3759841 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1743 471 285 87 32 chr4 151870411 151870596 -3759524 - B4A SINE B4 -59 233 39 5 1743 290 132 19 0 chr4 151870956 151871009 -3759111 + CT-rich Low_complexity Low_complexity 2 55 0 5 1743 198 359 51 0 chr4 151871441 151871519 -3758601 - L2a LINE L2 0 3426 3345 5 1743 461 228 111 25 chr4 151871572 151871734 -3758386 - MER20 DNA MER1_type -4 215 40 6 1743 225 65 0 0 chr4 151871851 151871882 -3758238 + (C)n Simple_repeat Simple_repeat 1 31 0 6 1743 743 256 22 6 chr4 151871882 151872063 -3758057 - B3A SINE B2 -14 184 1 6 1743 282 397 0 0 chr4 151872563 151872699 -3757421 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 1743 386 281 17 9 chr4 151872795 151872910 -3757210 - PB1D10 SINE Alu 0 117 2 6 1743 211 344 0 41 chr4 151875842 151875939 -3754181 + (CACG)n Simple_repeat Simple_repeat 4 96 0 6 1743 229 191 15 45 chr4 151876120 151876186 -3753934 + CT-rich Low_complexity Low_complexity 3 66 0 6 1743 268 274 147 0 chr4 151882479 151882498 -3747622 + B1_Mur1 SINE Alu 14 130 -19 6 1743 424 217 0 0 chr4 151882498 151882581 -3747539 + ID_B1 SINE B4 123 205 -19 6 1743 898 92 0 21 chr4 151882656 151882801 -3747319 + (TCCCC)n Simple_repeat Simple_repeat 3 144 0 6 1743 217 189 0 0 chr4 151883356 151883393 -3746727 - B1_Mus2 SINE Alu -108 39 3 6 1743 244 234 46 15 chr4 151883393 151883456 -3746664 - MTEb LTR MaLR -58 321 257 6 1743 352 324 43 91 chr4 151883434 151883665 -3746455 - MTEb LTR MaLR -77 302 83 6 1743 342 291 58 0 chr4 151883726 151883829 -3746291 - RSINE1 SINE B4 -45 120 12 6 1743 288 0 0 0 chr4 151883911 151883943 -3746177 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 6 1743 324 299 63 56 chr4 151884499 151884601 -3745519 - B4A SINE B4 0 292 183 6 1743 2055 168 135 5 chr4 151884601 151884972 -3745148 - MTC LTR MaLR 0 421 3 6 1743 324 299 63 56 chr4 151884972 151885011 -3745109 - B4A SINE B4 -110 182 150 6 1743 1017 78 14 0 chr4 151885175 151885316 -3744804 - B1_Mus1 SINE Alu -1 147 5 6 1743 225 168 97 89 chr4 151885857 151885981 -3744139 + RMER19A LTR ERVK 436 560 -177 6 1743 261 0 0 0 chr4 151886229 151886258 -3743862 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1743 852 151 0 0 chr4 151887017 151887246 -3742874 + (TG)n Simple_repeat Simple_repeat 1 229 0 6 1743 249 167 0 0 chr4 151887257 151887311 -3742809 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1743 252 241 103 77 chr4 151887313 151887329 -3742791 - B1F SINE Alu -27 122 3 6 1743 401 277 30 0 chr4 151887329 151887430 -3742690 - B4 SINE B4 -101 191 88 6 1743 468 128 0 0 chr4 151887436 151887514 -3742606 + (TCC)n Simple_repeat Simple_repeat 2 79 0 6 1743 666 72 0 0 chr4 151888651 151888748 -3741372 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1743 625 256 108 85 chr4 151888791 151889192 -3740928 - RMER13A LTR ERVK -43 584 119 6 1743 320 260 10 29 chr4 151889512 151889615 -3740505 - PB1 SINE Alu -2 125 25 6 1743 206 240 0 26 chr4 151891681 151891758 -3738362 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 6 1743 213 121 0 0 chr4 151892432 151892465 -3737655 + (CGTG)n Simple_repeat Simple_repeat 4 36 0 6 1743 533 265 128 50 chr4 151892466 151892724 -3737396 - B4A SINE B4 0 292 15 6 1743 459 277 19 0 chr4 151893677 151893836 -3736284 + CT-rich Low_complexity Low_complexity 2 163 0 6 1743 217 184 0 44 chr4 151893868 151893959 -3736161 + (TCTCTG)n Simple_repeat Simple_repeat 6 92 0 6 1743 216 262 0 16 chr4 151893965 151894027 -3736093 + CT-rich Low_complexity Low_complexity 1 61 0 6 1743 293 43 43 0 chr4 151894027 151894073 -3736047 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 6 1743 401 299 68 44 chr4 151894216 151894422 -3735698 - MER20 DNA MER1_type -5 214 4 6 1743 495 323 73 20 chr4 151895052 151895352 -3734768 + L1MD2 LINE L1 716 1031 -5516 6 1743 1031 215 77 0 chr4 151896135 151896344 -3733776 - URR1B DNA MER1_type 0 225 1 6 1743 435 261 27 9 chr4 151896602 151896714 -3733406 - PB1D7 SINE Alu -2 118 5 6 1743 254 318 53 53 chr4 151896907 151897040 -3733080 - ORR1B2 LTR MaLR -234 133 1 6 1743 1089 167 15 5 chr4 151897374 151897573 -3732547 - B3 SINE B2 -1 215 15 6 1743 281 314 95 9 chr4 151897641 151897846 -3732274 + L1MD LINE L1 5649 5871 -308 6 1743 264 30 0 0 chr4 151897864 151897897 -3732223 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1743 236 274 0 87 chr4 151899133 151899317 -3730803 + CT-rich Low_complexity Low_complexity 2 169 0 6 1743 201 213 15 62 chr4 151900867 151900932 -3729188 + CT-rich Low_complexity Low_complexity 4 65 0 6 1743 252 0 0 0 chr4 151901710 151901738 -3728382 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1743 405 0 0 0 chr4 151901738 151901782 -3728338 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1743 811 135 68 0 chr4 151901950 151902083 -3728037 - B1_Mur3 SINE Alu 0 149 8 6 1743 587 135 19 0 chr4 151902121 151902225 -3727895 + T-rich Low_complexity Low_complexity 4 109 0 6 1743 920 173 0 6 chr4 151902200 151902244 -3727876 + polypyrimidine Low_complexity Low_complexity 137 180 0 6 1743 1032 156 0 0 chr4 151902244 151902424 -3727696 + CT-rich Low_complexity Low_complexity 1 180 0 6 1743 920 173 0 6 chr4 151902424 151902559 -3727561 + polypyrimidine Low_complexity Low_complexity 2 136 0 6 1743 1103 89 0 22 chr4 151902574 151902757 -3727363 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1743 1195 56 0 0 chr4 151902757 151902901 -3727219 - B1_Mus2 SINE Alu -3 144 1 6 1743 573 221 212 12 chr4 151902943 151903108 -3727012 - B3A SINE B2 0 198 1 6 1743 621 263 112 27 chr4 151903212 151903470 -3726650 - B4A SINE B4 -11 281 2 6 1743 219 36 0 0 chr4 151903495 151903523 -3726597 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1743 240 336 132 33 chr4 151903619 151903770 -3726350 - MLT1K LTR MaLR -58 537 372 6 1743 414 0 0 0 chr4 151905147 151905193 -3724927 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1743 243 125 0 0 chr4 151910784 151910824 -3719296 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 6 1743 207 69 0 0 chr4 151911204 151911233 -3718887 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1744 819 238 0 0 chr4 151913687 151913838 -3716282 + RSINE1 SINE B4 9 159 -6 6 1744 306 0 0 0 chr4 151913846 151913880 -3716240 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1744 180 0 0 0 chr4 151914804 151914824 -3715296 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1744 251 318 157 31 chr4 151916350 151916638 -3713482 + L1M2 LINE L1 2425 2750 -3393 6 1744 312 70 0 0 chr4 151916650 151916693 -3713427 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1744 634 276 51 20 chr4 151916697 151916893 -3713227 - B3 SINE B2 -14 202 1 6 1744 267 114 0 0 chr4 151917066 151917110 -3713010 + (TCC)n Simple_repeat Simple_repeat 2 45 0 6 1744 656 215 7 59 chr4 151917121 151917274 -3712846 - ID_B1 SINE B4 0 224 80 6 1744 244 304 31 0 chr4 151918941 151919021 -3711099 - ID4_ SINE ID -62 90 9 6 1744 498 86 0 0 chr4 151919596 151919677 -3710443 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1744 680 213 31 68 chr4 151919678 151919839 -3710281 - B3A SINE B2 -42 156 2 6 1744 236 310 50 0 chr4 151923733 151923833 -3706287 + L3 LINE CR1 764 868 -3621 6 1744 313 64 21 0 chr4 151925347 151925394 -3704726 + tRNA-Phe-TTY tRNA tRNA 29 76 0 6 1744 2125 67 26 16 chr4 151925413 151925717 -3704403 - IAPLTR2b LTR ERVK -20 307 1 6 1744 756 278 36 45 chr4 151926103 151926115 -3704005 - B4A SINE B4 -6 286 275 6 1744 441 36 0 0 chr4 151926115 151926170 -3703950 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1744 756 283 45 45 chr4 151926170 151926410 -3703710 - B4A SINE B4 -18 274 19 6 1744 297 68 0 0 chr4 151927673 151927717 -3702403 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1744 183 353 68 37 chr4 151927917 151928108 -3702012 + L3 LINE CR1 764 960 -3529 6 1744 324 0 0 0 chr4 151929833 151929869 -3700251 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1744 324 0 0 0 chr4 151929869 151929904 -3700216 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1744 252 0 0 0 chr4 151930018 151930046 -3700074 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1744 360 0 0 0 chr4 151930046 151930085 -3700035 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1744 468 0 0 0 chr4 151930126 151930178 -3699942 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1744 333 0 0 0 chr4 151931527 151931564 -3698556 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1744 1137 128 0 0 chr4 151931592 151931772 -3698348 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 6 1744 22 56 0 0 chr4 151937177 151937213 -3692907 + AT_rich Low_complexity Low_complexity 1 36 0 6 1744 3281 70 2 0 chr4 151938777 151939176 -3690944 - MTB LTR MaLR 0 400 1 6 1744 820 285 97 17 chr4 151939267 151939567 -3690553 + MLT2D LTR ERVL 28 351 -63 6 1744 25 31 0 0 chr4 151940992 151941024 -3689096 + AT_rich Low_complexity Low_complexity 1 32 0 6 1744 378 261 72 48 chr4 151941041 151941166 -3688954 - RSINE1 SINE B4 0 165 38 6 1744 429 219 72 0 chr4 151941171 151941424 -3688696 + (GCTTG)n Simple_repeat Simple_repeat 1 271 0 6 1744 496 299 35 41 chr4 151941549 151941720 -3688400 + RMER30 DNA MER1_type 13 182 -20 6 1744 357 167 16 40 chr4 151944260 151944385 -3685735 + GA-rich Low_complexity Low_complexity 1 122 0 6 1744 1072 114 6 6 chr4 151944392 151944569 -3685551 + (GAA)n Simple_repeat Simple_repeat 1 177 0 6 1744 315 161 0 0 chr4 151946020 151946076 -3684044 + CT-rich Low_complexity Low_complexity 2 57 0 6 1744 266 280 0 77 chr4 151946591 151946734 -3683386 + G-rich Low_complexity Low_complexity 5 136 0 6 1744 316 340 48 0 chr4 151947414 151947517 -3682603 - MER21B LTR ERV1 -150 713 606 6 1744 411 222 0 3 chr4 151947707 151947801 -3682319 + B4A SINE B4 2 90 -202 6 1744 488 279 12 19 chr4 151947919 151948080 -3682040 + HAL1-2a_MD LINE L1 2347 2506 -518 6 1744 438 284 0 58 chr4 151949032 151949185 -3680935 + HAL1-2a_MD LINE L1 2345 2490 -534 6 1744 201 74 0 0 chr4 151949185 151949212 -3680908 + (CACCAT)n Simple_repeat Simple_repeat 3 29 0 6 1744 438 284 0 58 chr4 151949212 151949230 -3680890 + HAL1-2a_MD LINE L1 2491 2506 -518 6 1744 1511 217 53 50 chr4 151949369 151949747 -3680373 - MTEa LTR MaLR 0 379 1 7 1744 255 380 19 45 chr4 151949761 151949918 -3680202 - ERVL-E-int LTR ERVL -2429 3238 3086 7 1744 323 367 61 0 chr4 151950754 151950901 -3679219 + MLT1H LTR MaLR 38 193 -356 7 1744 215 209 31 62 chr4 151951255 151951352 -3678768 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 7 1744 215 174 22 0 chr4 151951366 151951412 -3678708 + (TTA)n Simple_repeat Simple_repeat 1 47 0 7 1744 353 188 58 41 chr4 151951424 151951596 -3678524 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 7 1744 702 242 207 24 chr4 151952489 151952735 -3677385 + B4A SINE B4 1 291 -1 7 1744 556 208 25 12 chr4 151952735 151953064 -3677056 + (CA)n Simple_repeat Simple_repeat 1 333 0 7 1744 224 148 54 36 chr4 151953065 151953121 -3676999 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 7 1744 213 65 0 0 chr4 151953178 151953209 -3676911 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1744 1112 194 19 14 chr4 151953587 151953801 -3676319 - B3 SINE B2 -1 215 1 7 1744 404 262 0 6 chr4 151954478 151954647 -3675473 + (CA)n Simple_repeat Simple_repeat 2 169 0 7 1744 339 285 0 0 chr4 151954661 151954833 -3675287 + (CA)n Simple_repeat Simple_repeat 2 173 0 7 1744 244 298 0 0 chr4 151956180 151956237 -3673883 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1744 2239 118 18 41 chr4 151957628 151958017 -3672103 - ORR1B1 LTR MaLR -10 384 5 7 1744 210 37 0 0 chr4 151958253 151958280 -3671840 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1744 232 134 43 43 chr4 151958492 151958562 -3671558 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1744 551 169 46 34 chr4 151958582 151959370 -3670750 + (TG)n Simple_repeat Simple_repeat 1 797 0 7 1744 421 45 71 26 chr4 151959382 151959495 -3670625 + (TG)n Simple_repeat Simple_repeat 2 119 0 7 1744 261 57 0 0 chr4 151960672 151960707 -3669413 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1744 22 0 0 0 chr4 151960950 151960972 -3669148 + AT_rich Low_complexity Low_complexity 1 22 0 7 1744 485 199 0 7 chr4 151960977 151961114 -3669006 + (TG)n Simple_repeat Simple_repeat 1 136 0 7 1744 336 272 167 68 chr4 151961122 151961386 -3668734 - B4A SINE B4 0 292 3 7 1744 2441 65 3 110 chr4 151961390 151961753 -3668367 - ORR1A2 LTR MaLR 0 327 4 7 1744 585 0 0 0 chr4 151962748 151962813 -3667307 + (GAAA)n Simple_repeat Simple_repeat 1 65 0 7 1744 818 122 0 7 chr4 151962939 151963088 -3667032 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 7 1744 509 257 6 0 chr4 151963692 151963871 -3666249 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1744 787 187 6 6 chr4 151963833 151964010 -3666110 + (TATG)n Simple_repeat Simple_repeat 2 178 0 7 1744 229 217 100 0 chr4 151964217 151964277 -3665843 - MLT1E2 LTR MaLR -481 146 81 7 1744 917 266 92 37 chr4 151964551 151964824 -3665296 - B4A SINE B4 0 292 5 7 1744 242 318 114 17 chr4 151964913 151965089 -3665031 - L1MB5 LINE L1 -100 6074 5882 7 1744 627 223 8 8 chr4 151965636 151965767 -3664353 - B1_Mus2 SINE Alu -13 134 4 7 1744 310 302 83 8 chr4 151965663 151965783 -3664337 - B4 SINE B4 -94 198 70 7 1744 321 89 0 0 chr4 151965849 151965894 -3664226 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1744 901 260 18 64 chr4 151965897 151966180 -3663940 - B4 SINE B4 -18 274 5 7 1744 1602 138 36 216 chr4 151966853 151967298 -3662822 + ORR1B2 LTR MaLR 3 367 0 7 1744 319 333 16 28 chr4 151968173 151968355 -3661765 + (CATG)n Simple_repeat Simple_repeat 1 180 0 7 1744 623 253 30 21 chr4 151969836 151970023 -3660097 + ORR1D1 LTR MaLR 204 405 -14 7 1744 2012 170 177 18 chr4 151970042 151970534 -3659586 - RMER15 LTR ERVL -5 570 1 7 1744 615 236 5 165 chr4 151970611 151970703 -3659417 - MTEa LTR MaLR 0 379 321 7 1744 858 238 83 0 chr4 151970703 151970896 -3659224 - B3 SINE B2 -6 210 2 7 1744 615 236 5 165 chr4 151970896 151971021 -3659099 - MTEa LTR MaLR -59 320 197 7 1744 576 198 16 29 chr4 151971025 151971619 -3658501 + GA-rich Low_complexity Low_complexity 1 586 0 7 1744 210 281 18 0 chr4 151971619 151971676 -3658444 + G-rich Low_complexity Low_complexity 6 63 0 7 1744 410 204 33 22 chr4 151971687 151971777 -3658343 - MTEa LTR MaLR -210 169 79 7 1744 427 275 78 6 chr4 151971860 151972039 -3658081 + MER5C DNA MER1_type 3 194 -119 7 1744 21 82 0 0 chr4 151972228 151972277 -3657843 + AT_rich Low_complexity Low_complexity 1 49 0 7 1744 348 304 0 0 chr4 151972299 151972391 -3657729 + Lx8 LINE L1 7105 7196 -277 7 1744 918 139 182 62 chr4 151972568 151972760 -3657360 - B3 SINE B2 -1 215 1 7 1744 2455 138 96 3 chr4 151973257 151973642 -3656478 + MTC LTR MaLR 1 421 0 7 1744 634 215 11 7 chr4 151973810 151974096 -3656024 + (TG)n Simple_repeat Simple_repeat 1 287 0 7 1744 516 231 18 12 chr4 151974105 151974276 -3655844 + (TATATG)n Simple_repeat Simple_repeat 6 177 0 7 1744 184 338 108 0 chr4 151974990 151975064 -3655056 - L4 LINE RTE -165 1864 1783 7 1744 852 277 54 54 chr4 151975323 151975525 -3654595 + Lx8 LINE L1 7175 7384 -89 7 1744 1161 147 4 176 chr4 151975525 151975686 -3654434 + URR1B DNA MER1_type 1 147 -78 7 1744 1618 48 0 0 chr4 151975686 151975872 -3654248 + B2_Mm1t SINE B2 1 186 -7 7 1744 1091 83 14 0 chr4 151975877 151976022 -3654098 + B1_Mus2 SINE Alu 1 147 0 7 1744 1161 147 4 176 chr4 151976022 151976126 -3653994 + URR1B DNA MER1_type 148 225 0 7 1744 852 277 54 54 chr4 151976126 151976217 -3653903 + Lx8 LINE L1 7385 7468 -5 7 1744 913 231 10 29 chr4 151976356 151976561 -3653559 + B3 SINE B2 2 202 -14 7 1744 1060 282 3 30 chr4 151977103 151977399 -3652721 - B4 SINE B4 -1 291 4 7 1744 1063 159 26 24 chr4 151978619 151978868 -3651252 + MTB_Mm LTR MaLR 1 175 -204 7 1744 1708 25 5 0 chr4 151978885 151979087 -3651033 + L1Md_A LINE L1 6380 6582 0 7 1744 216 0 0 0 chr4 151979103 151979127 -3650993 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1744 2236 67 10 10 chr4 151979127 151979493 -3650627 + MTB_Mm LTR MaLR 74 407 0 7 1744 929 76 8 0 chr4 151979496 151979627 -3650493 + (TCC)n Simple_repeat Simple_repeat 2 133 0 7 1744 234 62 0 0 chr4 151980534 151980566 -3649554 + (TGGGGG)n Simple_repeat Simple_repeat 6 37 0 7 1744 588 249 75 23 chr4 151980714 151980887 -3649233 - MTEa LTR MaLR 0 379 198 7 1744 404 182 0 0 chr4 151982467 151982533 -3647587 + (CTGGGG)n Simple_repeat Simple_repeat 1 66 0 7 1744 255 125 0 0 chr4 151982718 151982758 -3647362 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1744 342 67 0 0 chr4 151983343 151983388 -3646732 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1744 936 287 100 34 chr4 151984284 151984789 -3645331 + L1MDa LINE L1 779 1332 -5208 7 1744 265 305 135 81 chr4 151984934 151985202 -3644918 + L1MDa LINE L1 2114 2396 -4237 7 1744 527 214 17 67 chr4 151985202 151985322 -3644798 + PB1D10 SINE Alu 1 114 -3 7 1744 265 305 135 81 chr4 151985322 151985349 -3644771 + L1MDa LINE L1 2397 2425 -4208 7 1744 234 128 0 0 chr4 151985350 151985389 -3644731 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1744 432 286 98 61 chr4 151985410 151985836 -3644284 + L1MDa LINE L1 2388 2832 -3705 7 1744 1690 177 103 28 chr4 151985854 151986243 -3643877 - MTD LTR MaLR 0 419 2 7 1744 648 344 18 18 chr4 151986272 151986553 -3643567 - B4A SINE B4 -11 281 1 7 1744 285 388 17 0 chr4 151986559 151986675 -3643445 - FordPrefect DNA Tip100 -1420 263 146 7 1744 287 159 301 53 chr4 151986829 151986942 -3643178 - LTR52 LTR ERVL -256 165 25 7 1744 2027 166 27 59 chr4 151987680 151988084 -3642036 + ORR1B1 LTR MaLR 4 394 0 7 1744 392 259 50 7 chr4 151988744 151988884 -3641236 + L1ME4a LINE L1 5967 6112 -12 7 1744 370 242 31 10 chr4 151989684 151989780 -3640340 + ID_B1 SINE B4 101 198 -26 7 1744 291 273 0 0 chr4 151989753 151989830 -3640290 + B1_Mur1 SINE Alu 65 141 -8 7 1744 352 291 0 0 chr4 151989839 151989918 -3640202 + ID4 SINE ID 3 81 -2 7 1744 949 256 183 34 chr4 151989968 151989986 -3640134 - MTD LTR MaLR -50 371 360 7 1744 2758 91 14 35 chr4 151989986 151990410 -3639710 + RLTR9F LTR ERVK 1 415 0 7 1744 1071 245 63 9 chr4 151990410 151990714 -3639406 - MTD LTR MaLR -62 359 1 7 1744 341 267 9 38 chr4 151990772 151990877 -3639243 + MLT1A1 LTR MaLR 299 400 -8 7 1744 272 323 23 76 chr4 151990927 151991098 -3639022 + MLT1D LTR MaLR 116 277 -228 7 1744 262 371 50 6 chr4 151991088 151991248 -3638872 + MLT1D LTR MaLR 233 399 -106 7 1744 237 139 0 0 chr4 151992118 151992161 -3637959 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1744 688 247 225 56 chr4 151992188 151992437 -3637683 - B4A SINE B4 0 292 2 7 1744 223 242 61 0 chr4 151992595 151992760 -3637360 + (CACAG)n Simple_repeat Simple_repeat 4 178 0 7 1744 296 201 39 56 chr4 151992889 151993068 -3637052 + (CACAG)n Simple_repeat Simple_repeat 4 179 0 7 1744 368 178 68 0 chr4 151993196 151993359 -3636761 + (CACAG)n Simple_repeat Simple_repeat 4 177 0 7 1744 202 214 56 49 chr4 151993281 151993443 -3636677 + (CACTG)n Simple_repeat Simple_repeat 5 167 0 7 1744 233 356 121 12 chr4 151993473 151993638 -3636482 - MIR SINE MIR -36 226 44 7 1744 1163 232 83 63 chr4 151994499 151994862 -3635258 + MTE2a LTR MaLR 10 379 0 7 1744 231 114 0 0 chr4 151995615 151995650 -3634470 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1744 368 313 13 202 chr4 151995881 151995915 -3634205 - B3A SINE B2 -11 187 157 7 1744 336 111 0 0 chr4 151995915 151995978 -3634142 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1744 368 313 13 202 chr4 151995978 151996171 -3633949 - B3A SINE B2 -42 156 3 7 1744 217 292 15 0 chr4 151997373 151997438 -3632682 + CT-rich Low_complexity Low_complexity 2 67 0 7 1744 183 328 47 0 chr4 151997653 151997717 -3632403 - L2b LINE L2 -7 3368 3302 7 1744 203 289 51 39 chr4 151999480 151999567 -3630553 + MIRb SINE MIR 76 165 -103 7 1744 288 0 0 0 chr4 152000187 152000219 -3629901 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1744 2748 113 156 0 chr4 152000951 152001419 -3628701 - RMER19A LTR ERVK 0 737 197 2 1744 814 133 0 22 chr4 152001424 152001608 -3628512 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1744 404 141 0 25 chr4 152001797 152001877 -3628243 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 4 1744 244 316 40 20 chr4 152002097 152002197 -3627923 + MLT1I LTR MaLR 107 208 -203 5 1744 209 131 32 32 chr4 152002278 152002341 -3627779 + (CACAG)n Simple_repeat Simple_repeat 1 63 0 6 1744 930 256 55 63 chr4 152002678 152002932 -3627188 - B4 SINE B4 0 292 41 7 1744 439 299 29 29 chr4 152002941 152003079 -3627041 + MTD LTR MaLR 6 143 -276 8 1744 451 250 95 20 chr4 152003113 152003260 -3626860 + MTD LTR MaLR 262 419 0 8 1744 246 269 44 15 chr4 152003260 152003328 -3626792 - B4 SINE B4 -222 70 1 7 1744 270 0 0 0 chr4 152003716 152003746 -3626374 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1744 351 17 76 107 chr4 152003991 152004122 -3625998 + (CAGC)n Simple_repeat Simple_repeat 1 127 0 1 1744 348 241 82 18 chr4 152004979 152005089 -3625031 + RLTR23 LTR ERV1 314 430 0 1 1744 225 0 0 0 chr4 152005343 152005368 -3624752 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1744 2702 84 19 6 chr4 152005717 152006077 -3624043 - RLTR8 LTR ERVK 0 365 1 1 1744 372 73 0 56 chr4 152006704 152006776 -3623344 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 1 1744 756 213 8 0 chr4 152007152 152007389 -3622731 + (TG)n Simple_repeat Simple_repeat 1 239 0 1 1744 218 57 0 54 chr4 152007768 152007805 -3622315 + (TCC)n Simple_repeat Simple_repeat 1 35 0 1 1744 345 312 99 14 chr4 152007922 152008133 -3621987 - LTR40a LTR ERVL -287 232 4 1 1744 289 341 44 38 chr4 152008607 152008790 -3621330 + RMER15 LTR ERVL 389 572 -3 1 1744 930 273 49 25 chr4 152009446 152009731 -3620389 + B4 SINE B4 1 292 0 1 1744 417 244 0 0 chr4 152009732 152009855 -3620265 + (CA)n Simple_repeat Simple_repeat 2 124 0 2 1744 347 279 0 0 chr4 152010538 152010616 -3619504 - ID4 SINE ID -62 90 13 2 1744 415 238 56 28 chr4 152010655 152010763 -3619357 - PB1D10 SINE Alu -6 111 1 2 1744 1042 247 128 24 chr4 152011287 152011623 -3618497 - MTEb LTR MaLR 0 379 9 2 1744 367 319 58 15 chr4 152012045 152012182 -3617938 + RSINE1 SINE B4 2 144 -21 2 1744 978 268 30 0 chr4 152012334 152012559 -3617561 + MTD LTR MaLR 10 241 -178 2 1744 2186 84 9 59 chr4 152012559 152012899 -3617221 - ORR1A2 LTR MaLR 0 327 5 2 1744 398 224 53 45 chr4 152012912 152013054 -3617066 + MTD LTR MaLR 273 401 -20 2 1744 415 321 123 21 chr4 152013186 152013498 -3616622 - MLT1K LTR MaLR -188 407 43 2 1744 273 255 107 10 chr4 152014175 152014278 -3615842 - B3A SINE B2 0 198 86 2 1744 464 298 28 21 chr4 152017006 152017150 -3612970 - MT2A LTR ERVL -109 424 280 2 1744 837 133 0 0 chr4 152018207 152018342 -3611778 + (TCG)n Simple_repeat Simple_repeat 3 137 0 3 1744 306 309 144 30 chr4 152018585 152018855 -3611265 + MER74B LTR ERVL 43 343 -279 3 1744 731 183 119 11 chr4 152018977 152019154 -3610966 - ORR1D1 LTR MaLR 0 384 189 3 1744 742 173 19 0 chr4 152019155 152019427 -3610693 + (CA)n Simple_repeat Simple_repeat 1 277 0 3 1744 751 249 5 26 chr4 152019427 152019447 -3610673 - ORR1D1 LTR MaLR -184 190 172 3 1744 1299 39 0 32 chr4 152019447 152019632 -3610488 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1744 751 249 5 26 chr4 152019632 152019805 -3610315 - ORR1D1 LTR MaLR -203 171 1 3 1744 252 276 193 11 chr4 152019989 152020077 -3610043 - MTD LTR MaLR -295 124 21 3 1744 189 74 0 0 chr4 152020609 152020636 -3609484 + (AGGGGG)n Simple_repeat Simple_repeat 1 27 0 3 1744 224 250 15 59 chr4 152020957 152021025 -3609095 + MIR3 SINE MIR 110 174 -34 3 1744 180 269 51 13 chr4 152021654 152021733 -3608387 + MIRc SINE MIR 2 83 -185 3 1744 771 237 160 77 chr4 152022113 152022365 -3607755 + ORR1D2 LTR MaLR 5 303 -67 3 1744 434 33 0 16 chr4 152022365 152022426 -3607694 + (TTA)n Simple_repeat Simple_repeat 2 61 0 4 1744 1137 73 0 0 chr4 152022426 152022563 -3607557 - B1_Mm SINE Alu -9 138 2 4 1744 771 237 160 77 chr4 152022563 152022647 -3607473 + ORR1D2 LTR MaLR 304 369 -1 3 1744 22 0 0 0 chr4 152022960 152022982 -3607138 + AT_rich Low_complexity Low_complexity 1 22 0 4 1744 5085 122 45 112 chr4 152023394 152024361 -3605759 + RMER19B LTR ERVK 1 902 0 4 1744 663 280 111 9 chr4 152026160 152026376 -3603744 + B4 SINE B4 43 280 -12 4 1744 185 154 26 0 chr4 152026404 152026443 -3603677 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1744 474 18 0 0 chr4 152026830 152026885 -3603235 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1744 848 187 0 3 chr4 152027009 152027604 -3602516 + (CCCA)n Simple_repeat Simple_repeat 1 592 0 4 1744 848 167 0 11 chr4 152027626 152028071 -3602049 + (CCCA)n Simple_repeat Simple_repeat 1 439 0 4 1744 647 207 0 12 chr4 152028036 152028202 -3601918 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 4 1744 330 265 102 31 chr4 152028628 152028951 -3601169 + RMER17D LTR ERVK 128 473 -416 4 1744 789 215 108 0 chr4 152029744 152029939 -3600181 + B3 SINE B2 1 216 0 5 1744 335 252 81 24 chr4 152030174 152030312 -3599808 - L1MD LINE L1 -895 5251 5105 5 1744 399 56 0 0 chr4 152030328 152030382 -3599738 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 5 1744 627 14 0 0 chr4 152030394 152030466 -3599654 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 5 1744 959 298 70 20 chr4 152030504 152030959 -3599161 - L1MD LINE L1 -1290 4856 4379 5 1744 715 156 292 6 chr4 152031065 152031098 -3599022 - B3 SINE B2 0 216 183 5 1744 432 0 0 0 chr4 152031098 152031146 -3598974 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1744 715 156 292 6 chr4 152031146 152031280 -3598840 - B3 SINE B2 -34 182 2 5 1744 607 262 7 20 chr4 152031294 152031442 -3598678 - B1_Mur1 SINE Alu -3 146 1 5 1744 255 265 37 15 chr4 152031885 152032019 -3598101 + (TATAG)n Simple_repeat Simple_repeat 2 138 0 5 1744 27 49 0 0 chr4 152032105 152032146 -3597974 + AT_rich Low_complexity Low_complexity 1 41 0 5 1744 251 318 106 0 chr4 152032387 152032538 -3597582 - L1MD LINE L1 -1821 4325 4159 5 1744 420 276 201 21 chr4 152033444 152033503 -3596617 + RMER15 LTR ERVL 341 397 -178 5 1744 2970 44 3 0 chr4 152033503 152033846 -3596274 - ORR1A1 LTR MaLR 0 346 3 6 1744 420 276 201 21 chr4 152033846 152033975 -3596145 + RMER15 LTR ERVL 398 563 -12 5 1744 339 281 19 37 chr4 152033951 152034058 -3596062 - PB1 SINE Alu -22 105 1 6 1744 216 250 12 62 chr4 152033994 152034075 -3596045 - B4A SINE B4 -147 145 69 6 1744 687 305 102 42 chr4 152034082 152034465 -3595655 - MLT1A1 LTR MaLR -2 406 1 6 1744 258 103 63 13 chr4 152034819 152034898 -3595222 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 6 1744 359 182 13 0 chr4 152034922 152034999 -3595121 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1744 729 0 0 0 chr4 152035013 152035094 -3595026 + (TTC)n Simple_repeat Simple_repeat 1 81 0 6 1744 1153 58 0 0 chr4 152035506 152035644 -3594476 + B1_Mus2 SINE Alu 1 138 -9 6 1744 368 0 0 41 chr4 152035644 152035693 -3594427 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1744 331 319 197 25 chr4 152035711 152035955 -3594165 - L1MC3 LINE L1 -1650 6135 5850 6 1744 2078 89 60 40 chr4 152036036 152036388 -3593732 + Lx LINE L1 6241 6599 -55 7 1744 415 339 59 30 chr4 152036399 152036685 -3593435 - L1MC3 LINE L1 -621 5723 5437 6 1744 215 316 13 0 chr4 152036691 152036767 -3593353 - BC1_Mm scRNA scRNA -68 84 8 7 1744 626 200 179 17 chr4 152037307 152037480 -3592640 - B3 SINE B2 -14 202 2 7 1744 271 287 116 9 chr4 152038212 152038415 -3591705 + L1MB5 LINE L1 5953 6181 -3 7 1744 1035 199 29 0 chr4 152040109 152040315 -3589805 - ORR1D2 LTR MaLR -158 212 1 7 1744 193 149 20 78 chr4 152040920 152041022 -3589098 + (TCTCTG)n Simple_repeat Simple_repeat 3 98 0 7 1744 315 0 0 0 chr4 152041047 152041082 -3589038 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1744 378 0 0 0 chr4 152041082 152041123 -3588997 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1744 742 252 44 34 chr4 152041131 152041336 -3588784 + MTEb LTR MaLR 139 345 -34 7 1744 405 0 0 0 chr4 152042119 152042164 -3587956 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1744 658 226 0 9 chr4 152042165 152042503 -3587617 + (CA)n Simple_repeat Simple_repeat 1 334 0 8 1744 240 137 0 0 chr4 152042873 152042924 -3587196 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 8 1744 387 0 0 0 chr4 152042940 152042983 -3587137 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 1744 198 0 0 0 chr4 152042983 152043004 -3587116 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1745 3544 25 2 0 chr4 152043763 152044158 -3585962 - MTA_Mm LTR MaLR 0 396 1 8 1745 257 362 43 24 chr4 152044329 152044493 -3585627 - MLT1J-int LTR MaLR -438 949 783 8 1745 456 67 0 0 chr4 152044501 152044561 -3585559 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1745 384 22 0 0 chr4 152044746 152044791 -3585329 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1745 825 229 17 28 chr4 152044792 152044972 -3585148 - B3A SINE B2 -16 182 5 8 1745 305 282 0 0 chr4 152045286 152045417 -3584703 + (TCTCTG)n Simple_repeat Simple_repeat 6 136 0 8 1745 263 284 0 33 chr4 152045445 152045734 -3584386 + (TCTCTG)n Simple_repeat Simple_repeat 1 279 0 8 1745 418 211 60 22 chr4 152045988 152046147 -3583973 + MTE2b LTR MaLR 128 314 -65 9 1745 1793 208 58 5 chr4 152046637 152047031 -3583089 + MTD LTR MaLR 1 405 -14 9 1745 253 314 0 0 chr4 152047691 152047761 -3582359 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1745 502 122 65 0 chr4 152047765 152047904 -3582216 + (CAGA)n Simple_repeat Simple_repeat 3 150 0 9 1745 297 332 36 0 chr4 152048639 152048775 -3581345 - MIR SINE MIR -98 164 31 9 1745 330 317 21 21 chr4 152048794 152048939 -3581181 - HAL1-2a_MD LINE L1 -485 2539 2395 9 1745 702 91 0 0 chr4 152050889 152050988 -3579132 + (TCCA)n Simple_repeat Simple_repeat 3 101 0 9 1745 369 0 0 0 chr4 152051341 152051382 -3578738 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1745 450 94 0 0 chr4 152052131 152052195 -3577925 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1745 786 196 0 0 chr4 152054181 152054474 -3575646 + (TG)n Simple_repeat Simple_repeat 1 293 0 9 1745 663 325 36 76 chr4 152054751 152055054 -3575066 + B4A SINE B4 2 292 0 1 1745 553 342 46 7 chr4 152055262 152055568 -3574552 + L1MEc LINE L1 573 890 -5510 1 1745 666 216 16 0 chr4 152055663 152055788 -3574332 + ID_B1 SINE B4 96 222 -2 1 1745 518 212 35 9 chr4 152055809 152055951 -3574169 + B3 SINE B2 33 182 -11 1 1745 2529 65 72 16 chr4 152055960 152056336 -3573784 + MTB_Mm LTR MaLR 3 399 -8 1 1745 328 314 59 0 chr4 152056453 152056571 -3573549 + L1MEc LINE L1 1018 1142 -5258 1 1745 297 344 25 56 chr4 152056602 152056762 -3573358 + B4A SINE B4 1 155 -137 1 1745 2955 117 118 11 chr4 152056793 152057320 -3572800 - RMER4B LTR ERVK -2 583 1 1 1745 228 310 68 68 chr4 152057320 152057569 -3572551 + L1MEc LINE L1 1662 1910 -4429 1 1745 888 297 18 43 chr4 152057610 152057888 -3572232 + B4A SINE B4 1 271 -21 1 1745 274 0 0 0 chr4 152057914 152057957 -3572163 - L1Md_T LINE L1 -1 6581 6539 1 1745 704 157 45 13 chr4 152058070 152058225 -3571895 - RLTR11A LTR ERVK 0 528 369 1 1745 331 309 0 0 chr4 152058535 152058619 -3571501 + C-rich Low_complexity Low_complexity 3 86 0 1 1745 228 269 12 25 chr4 152059074 152059154 -3570966 + ORR1E LTR MaLR 7 85 -274 1 1745 4330 39 19 0 chr4 152059305 152059840 -3570280 - L1Md_T LINE L1 0 6582 6038 1 1745 238 283 203 62 chr4 152060532 152060709 -3569411 - B4 SINE B4 -1 291 90 1 1745 243 0 0 0 chr4 152061620 152061647 -3568473 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1745 283 326 11 11 chr4 152061648 152061738 -3568382 - B4 SINE B4 -4 288 199 1 1745 296 326 75 75 chr4 152061814 152062066 -3568054 - RMER15 LTR ERVL -77 498 247 1 1745 683 239 6 23 chr4 152062171 152062342 -3567778 - B4 SINE B4 -123 169 2 1 1745 384 307 48 58 chr4 152062421 152062715 -3567405 - B4A SINE B4 -1 291 1 1 1745 448 266 78 73 chr4 152064081 152064272 -3565848 - B3A SINE B2 0 198 7 1 1745 241 313 60 9 chr4 152064840 152064956 -3565164 - LTR41B LTR ERVL -53 705 584 1 1745 198 128 0 0 chr4 152065340 152065379 -3564741 + (G)n Simple_repeat Simple_repeat 1 39 0 1 1745 465 321 43 29 chr4 152065571 152065850 -3564270 + MLT1I LTR MaLR 128 410 -1 1 1745 299 309 84 19 chr4 152065854 152066009 -3564111 - MIRb SINE MIR -71 197 33 1 1745 5407 52 1 3 chr4 152066332 152067030 -3563090 - L1Md_F2 LINE L1 -1 6581 5885 1 1745 279 175 0 0 chr4 152067338 152067395 -3562725 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1745 254 274 50 33 chr4 152067405 152067526 -3562594 + (CATG)n Simple_repeat Simple_repeat 2 124 0 1 1745 250 279 0 14 chr4 152067555 152067624 -3562496 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 1 1745 289 312 61 34 chr4 152069123 152069266 -3560854 - MIR SINE MIR -120 148 2 1 1745 934 285 70 50 chr4 152069695 152070053 -3560067 - MTE2a LTR MaLR -14 365 1 1 1745 748 244 134 19 chr4 152070243 152070496 -3559624 - MTEb LTR MaLR -2 357 106 1 1745 299 303 65 16 chr4 152070519 152070643 -3559477 + RMER30 DNA MER1_type 72 201 -1 1 1745 552 178 0 0 chr4 152071037 152071144 -3558976 + (TG)n Simple_repeat Simple_repeat 1 107 0 1 1745 207 139 0 0 chr4 152071168 152071204 -3558916 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1 1745 190 316 71 0 chr4 152072220 152072318 -3557802 + MIR SINE MIR 40 144 -64 1 1745 217 282 66 66 chr4 152074229 152074320 -3555800 + L3 LINE CR1 3498 3588 -901 1 1745 935 182 31 10 chr4 152074340 152074534 -3555586 - B3 SINE B2 0 216 19 1 1745 242 167 0 0 chr4 152074681 152074723 -3555397 + MTC LTR MaLR 47 88 -333 1 1745 514 317 43 6 chr4 152074955 152075117 -3555003 + MER58A DNA MER1_type 3 170 -54 1 1745 183 303 15 0 chr4 152075503 152075569 -3554551 + L2 LINE L2 2399 2465 -954 1 1745 336 353 101 6 chr4 152075891 152076059 -3554061 - MER77 LTR ERVL -256 351 168 1 1745 760 137 0 14 chr4 152076682 152076823 -3553297 + CT-rich Low_complexity Low_complexity 2 140 0 1 1745 1680 172 7 70 chr4 152078844 152079270 -3550850 - RMER17C LTR ERVK -11 399 1 1 1745 1211 212 196 88 chr4 152079329 152079737 -3550383 + MT2A LTR ERVL 1 452 -81 1 1745 381 22 0 0 chr4 152079741 152079787 -3550333 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1745 986 226 142 3 chr4 152079826 152080114 -3550006 - ORR1D2 LTR MaLR -42 328 1 1 1745 377 226 0 73 chr4 152080174 152080365 -3549755 + GA-rich Low_complexity Low_complexity 2 178 0 1 1745 260 295 17 53 chr4 152080490 152080629 -3549491 - ORR1D1 LTR MaLR -234 136 7 1 1745 332 162 147 0 chr4 152081016 152081084 -3549036 - ID4_ SINE ID -2 81 4 1 1745 439 260 199 12 chr4 152081109 152081280 -3548840 + ORR1D1 LTR MaLR 171 373 -1 1 1745 1425 241 93 16 chr4 152082469 152082845 -3547275 - MTD LTR MaLR -14 405 1 1 1745 281 327 13 0 chr4 152084210 152084360 -3545760 + (CA)n Simple_repeat Simple_repeat 1 152 0 1 1745 798 245 10 58 chr4 152084557 152084741 -3545379 + B3A SINE B2 1 183 -15 1 1745 387 0 0 0 chr4 152084741 152084784 -3545336 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1745 798 245 10 58 chr4 152084784 152084807 -3545313 + B3A SINE B2 184 198 0 1 1745 604 279 7 0 chr4 152085022 152085158 -3544962 + RSINE1 SINE B4 1 137 -28 1 1745 246 62 0 0 chr4 152085212 152085244 -3544876 + (CG)n Simple_repeat Simple_repeat 2 33 0 1 1745 250 67 22 22 chr4 152085244 152085289 -3544831 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1745 2490 161 37 8 chr4 152085407 152085895 -3544225 - RLTR16 LTR ERVK -3 502 1 1 1745 371 190 63 0 chr4 152087044 152087123 -3542997 - ID_B1 SINE B4 -7 217 134 1 1745 653 126 0 9 chr4 152087436 152087548 -3542572 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 1745 1076 239 45 4 chr4 152087571 152087835 -3542285 - B4A SINE B4 -14 278 4 1 1745 198 397 39 16 chr4 152088202 152088330 -3541790 - L2b LINE L2 0 3375 3245 1 1745 183 188 0 0 chr4 152088374 152088422 -3541698 + (GGATG)n Simple_repeat Simple_repeat 4 51 0 1 1745 443 261 47 70 chr4 152089003 152089131 -3540989 - B4 SINE B4 0 292 168 1 1745 377 161 0 44 chr4 152089125 152089216 -3540904 + ORR1C2 LTR MaLR 30 116 -268 1 1745 1421 185 87 7 chr4 152089217 152089516 -3540604 + ORR1C2 LTR MaLR 61 383 -1 1 1745 1320 228 158 0 chr4 152089517 152089859 -3540261 - MTD LTR MaLR -23 396 1 1 1745 1472 265 41 55 chr4 152089906 152090345 -3539775 - RMER19C LTR ERVK 0 611 179 1 1745 343 194 0 56 chr4 152090575 152090646 -3539474 + MLT1B LTR MaLR 38 104 -286 1 1745 454 235 12 0 chr4 152091071 152091329 -3538791 + (TG)n Simple_repeat Simple_repeat 1 261 0 1 1745 991 264 17 31 chr4 152091356 152091645 -3538475 - B4 SINE B4 -6 286 2 1 1745 276 320 86 29 chr4 152091651 152091860 -3538260 - L1MEc LINE L1 -1654 4665 4445 1 1745 268 266 19 18 chr4 152091910 152092035 -3538085 - L1MEc LINE L1 -2845 3474 3349 1 1745 311 259 203 0 chr4 152092366 152092509 -3537611 - L1MEc LINE L1 -6069 331 160 1 1745 2871 56 20 5 chr4 152092555 152092947 -3537173 - MTB LTR MaLR 0 400 3 1 1745 228 264 0 0 chr4 152092949 152093002 -3537118 - ID4 SINE ID -12 71 19 1 1745 552 207 0 0 chr4 152094308 152094429 -3535691 + (CA)n Simple_repeat Simple_repeat 2 122 0 1 1745 429 277 0 4 chr4 152094466 152094698 -3535422 + (CA)n Simple_repeat Simple_repeat 1 231 0 1 1745 195 42 0 0 chr4 152095577 152095601 -3534519 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1 1745 200 288 30 0 chr4 152095604 152095670 -3534450 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1745 416 362 17 17 chr4 152095672 152095852 -3534268 - B4 SINE B4 -2 290 111 1 1745 672 136 3 37 chr4 152095850 152096000 -3534120 - ORR1A4 LTR MaLR -184 143 2 1 1745 1032 212 117 2 chr4 152096370 152096726 -3533394 - MTD LTR MaLR -6 413 1 1 1745 202 273 22 43 chr4 152097226 152097318 -3532802 + L2 LINE L2 2599 2688 -731 1 1745 1537 208 68 30 chr4 152097831 152098233 -3531887 + MTD LTR MaLR 1 405 -14 1 1745 589 344 86 3 chr4 152100468 152100827 -3529293 + L1MB7 LINE L1 5461 5849 -335 1 1745 357 229 32 14 chr4 152100843 152100944 -3529176 - MTEb LTR MaLR -20 359 269 1 1745 785 174 0 6 chr4 152100984 152101146 -3528974 + GA-rich Low_complexity Low_complexity 1 161 0 1 1745 318 159 73 169 chr4 152101155 152101291 -3528829 - B1F SINE Alu -16 133 11 1 1745 246 316 52 17 chr4 152101314 152101430 -3528690 - B1F SINE Alu -7 142 23 1 1745 429 324 97 91 chr4 152101829 152102399 -3527721 + L1M5 LINE L1 2556 3128 -3018 1 1745 687 239 7 0 chr4 152102403 152102541 -3527579 + RSINE1 SINE B4 3 141 -24 1 1745 239 173 19 0 chr4 152102579 152102631 -3527489 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1745 530 314 48 39 chr4 152102642 152102871 -3527249 + L1M5 LINE L1 3087 3317 -2829 1 1745 447 302 27 124 chr4 152102919 152103176 -3526944 + MTE2a LTR MaLR 39 270 -109 1 1745 306 226 0 0 chr4 152103534 152103596 -3526524 - RSINE1 SINE B4 -102 63 2 1 1745 966 215 2 20 chr4 152104471 152104767 -3525353 + (TGGA)n Simple_repeat Simple_repeat 1 290 0 1 1745 216 0 0 0 chr4 152104767 152104791 -3525329 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1745 302 292 6 53 chr4 152104791 152104846 -3525274 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 1 1745 873 230 151 117 chr4 152105135 152105485 -3524635 - ORR1D2 LTR MaLR -8 362 1 1 1745 527 199 31 6 chr4 152105849 152106011 -3524109 + C-rich Low_complexity Low_complexity 2 167 0 1 1745 352 269 59 25 chr4 152106823 152106941 -3523179 + MER115 DNA Tip100 488 609 -84 1 1745 746 274 18 32 chr4 152107047 152107266 -3522854 - B3 SINE B2 0 216 1 1 1745 258 322 135 49 chr4 152108229 152108392 -3521728 - MTEb LTR MaLR -1 378 202 1 1745 718 290 49 87 chr4 152108800 152109170 -3520950 + MLT1B LTR MaLR 8 363 -27 1 1745 233 369 101 6 chr4 152110115 152110284 -3519836 - MLT1C LTR MaLR -119 348 164 2 1745 373 214 0 35 chr4 152110307 152110394 -3519726 - MTEb LTR MaLR 0 379 296 2 1745 384 198 37 0 chr4 152110651 152110732 -3519388 - B4 SINE B4 -100 192 109 2 1745 1194 280 87 13 chr4 152110795 152111266 -3518854 - Lx8 LINE L1 -2 7471 6966 2 1745 316 262 0 0 chr4 152111288 152111372 -3518748 - B4 SINE B4 -208 84 1 2 1745 1619 163 7 7 chr4 152111588 152111860 -3518260 - MTC LTR MaLR 0 421 150 2 1745 270 0 0 0 chr4 152112255 152112285 -3517835 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1745 730 289 68 24 chr4 152113293 152113545 -3516575 + B4A SINE B4 8 270 -22 2 1745 408 173 33 7 chr4 152113601 152113752 -3516368 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 1745 195 184 23 11 chr4 152113766 152113854 -3516266 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1745 368 261 46 116 chr4 152113876 152114049 -3516071 + HAL1-3A_ME LINE L1 1966 2126 -732 2 1745 278 401 15 0 chr4 152114829 152114966 -3515154 - Lx8 LINE L1 -167 7306 7168 2 1745 367 293 32 11 chr4 152115002 152115192 -3514928 + L1M5 LINE L1 3322 3515 -2631 2 1745 360 311 101 52 chr4 152115882 152116130 -3513990 + L1M5 LINE L1 4277 4536 -1610 2 1745 735 292 23 88 chr4 152116268 152116576 -3513544 + B4A SINE B4 5 292 0 2 1745 282 206 0 0 chr4 152116644 152116712 -3513408 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1745 286 248 185 0 chr4 152116756 152116913 -3513207 - Lx9 LINE L1 -1 7643 7458 2 1745 660 205 33 0 chr4 152117049 152117171 -3512949 - B3 SINE B2 -3 213 88 2 1745 284 200 18 0 chr4 152117231 152117286 -3512834 + B3 SINE B2 24 79 -137 2 1745 236 263 0 17 chr4 152119229 152119287 -3510833 + (TTAGGG)n Simple_repeat Simple_repeat 5 61 0 2 1745 390 91 0 0 chr4 152119299 152119354 -3510766 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1745 324 194 69 0 chr4 152119359 152119431 -3510689 + L1MC4a LINE L1 6603 6679 -1203 2 1745 1058 139 0 41 chr4 152119460 152119632 -3510488 - B2_Mm2 SINE B2 -30 165 1 2 1745 283 308 9 9 chr4 152119717 152119822 -3510298 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 2 1745 33638 108 14 24 chr4 152119823 152121526 -3508594 + L1Md_F2 LINE L1 295 1969 -3914 2 1745 201 39 0 0 chr4 152121526 152121552 -3508568 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1745 33638 64 10 3 chr4 152121552 152125888 -3504232 + L1Md_F2 LINE L1 1970 6344 -238 2 1745 350 165 55 0 chr4 152125947 152126074 -3504046 + (TTAGGG)n Simple_repeat Simple_repeat 3 136 0 2 1745 200 214 0 87 chr4 152126127 152126175 -3503945 + (TTAGG)n Simple_repeat Simple_repeat 5 47 0 2 1745 1816 180 154 47 chr4 152126175 152126578 -3503542 - RLTR41 LTR ERV1 0 446 1 2 1745 200 214 0 87 chr4 152126578 152126621 -3503499 + (TTAGG)n Simple_repeat Simple_repeat 5 44 0 2 1745 26 0 0 0 chr4 152127050 152127076 -3503044 + AT_rich Low_complexity Low_complexity 1 26 0 2 1745 2459 11 3 0 chr4 152127076 152127358 -3502762 - MT2_Mm LTR ERVL -210 283 1 2 1745 240 231 95 95 chr4 152127358 152127414 -3502706 - ORR1A3-int LTR MaLR -1350 613 558 2 1745 399 167 46 35 chr4 152127396 152127483 -3502637 - ORR1A3-int LTR MaLR -1323 640 553 2 1745 996 302 13 69 chr4 152127598 152127989 -3502131 + MTE2a LTR MaLR 6 374 -5 2 1745 1666 218 102 60 chr4 152128181 152128699 -3501421 - RMER15 LTR ERVL -6 569 30 2 1745 241 279 15 0 chr4 152128713 152128781 -3501339 - RMER15 LTR ERVL -503 72 4 2 1745 406 269 123 7 chr4 152128806 152128952 -3501168 + MER54A LTR ERVL 1 163 -738 2 1745 276 367 44 20 chr4 152129083 152129286 -3500834 + MER54A LTR ERVL 117 324 -577 2 1745 608 265 100 80 chr4 152129433 152129794 -3500326 + ORR1D2 LTR MaLR 1 368 -2 2 1745 246 281 86 43 chr4 152129837 152129930 -3500190 + L2a LINE L2 3308 3404 -22 2 1745 211 270 191 0 chr4 152131448 152131511 -3498609 + L2b LINE L2 3298 3372 -3 2 1745 393 22 0 0 chr4 152131938 152131984 -3498136 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 2 1745 877 185 154 0 chr4 152132002 152132197 -3497923 + MTD LTR MaLR 182 406 -13 2 1745 230 281 15 15 chr4 152132199 152132264 -3497856 - ID4_ SINE ID -17 66 2 2 1745 479 200 89 10 chr4 152132282 152132383 -3497737 - PB1D10 SINE Alu -8 109 1 2 1745 285 260 30 40 chr4 152132303 152132403 -3497717 - B4A SINE B4 -125 167 69 2 1745 371 98 0 10 chr4 152132956 152133016 -3497104 + (ATGGTG)n Simple_repeat Simple_repeat 1 59 0 2 1745 1119 129 0 0 chr4 152133016 152133194 -3496926 + (TGG)n Simple_repeat Simple_repeat 1 178 0 2 1745 371 129 0 41 chr4 152133194 152133252 -3496868 + (ATGGTG)n Simple_repeat Simple_repeat 4 60 0 2 1745 369 0 0 0 chr4 152133363 152133404 -3496716 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 1745 351 274 125 54 chr4 152134942 152135054 -3495066 - PB1D9 SINE Alu 0 120 1 2 1745 193 29 29 29 chr4 152135523 152135558 -3494562 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1745 1329 20 0 0 chr4 152135560 152135707 -3494413 - B1_Mm SINE Alu 0 147 1 2 1745 1418 135 255 47 chr4 152136517 152136659 -3493461 - ORR1C2 LTR MaLR 0 384 168 2 1745 366 23 0 0 chr4 152136659 152136702 -3493418 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1745 1418 135 255 47 chr4 152136702 152136877 -3493243 - ORR1C2 LTR MaLR -217 167 2 2 1745 641 265 170 21 chr4 152138305 152138540 -3491580 + MTD LTR MaLR 150 419 0 2 1745 180 97 0 0 chr4 152138569 152138600 -3491520 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1745 549 208 0 0 chr4 152139034 152139207 -3490913 + CT-rich Low_complexity Low_complexity 2 174 0 2 1745 525 255 146 43 chr4 152139765 152140167 -3489953 - RLTR15 LTR ERVK -39 320 1 2 1745 323 283 25 94 chr4 152140232 152140435 -3489685 - L1MEe LINE L1 -4478 376 188 2 1745 591 272 34 86 chr4 152140658 152140867 -3489253 + B3A SINE B2 17 214 -2 2 1745 366 345 108 14 chr4 152140966 152141189 -3488931 + Kanga1a DNA Tc2 4 247 -507 2 1745 326 361 0 9 chr4 152141249 152141358 -3488762 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 1745 521 270 23 91 chr4 152141358 152141533 -3488587 - RSINE1 SINE B4 0 165 3 2 1745 798 243 54 10 chr4 152141563 152141767 -3488353 + B3 SINE B2 4 216 0 2 1745 282 29 0 0 chr4 152141772 152141807 -3488313 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1745 183 281 130 33 chr4 152142548 152142640 -3487480 + MIRm SINE MIR 176 276 0 2 1745 3841 137 96 13 chr4 152142924 152143604 -3486516 - RMER19B LTR ERVK 0 902 167 2 1745 292 377 57 16 chr4 152143597 152143721 -3486399 + RMER20B LTR ERVK 478 606 -21 2 1745 628 245 75 0 chr4 152143751 152143910 -3486210 - B4A SINE B4 -3 289 119 2 1745 211 244 0 0 chr4 152143929 152143970 -3486150 - B4A SINE B4 -225 67 27 2 1745 266 0 29 0 chr4 152143977 152144011 -3486109 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1745 1195 207 68 81 chr4 152144078 152144473 -3485647 - Lx7 LINE L1 0 7696 7307 2 1745 221 257 121 26 chr4 152144640 152144756 -3485364 + MIRb SINE MIR 7 133 -135 2 1745 198 0 0 0 chr4 152145504 152145526 -3484594 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1745 303 169 42 84 chr4 152146353 152146376 -3483744 - ORR1D1 LTR MaLR -19 355 335 2 1745 991 228 242 50 chr4 152146376 152146791 -3483329 - MT2B LTR ERVL 0 601 114 2 1745 324 0 0 0 chr4 152146791 152146827 -3483293 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 1745 991 228 242 50 chr4 152146827 152146915 -3483205 - MT2B LTR ERVL -488 113 1 2 1745 303 169 42 84 chr4 152146915 152146962 -3483158 - ORR1D1 LTR MaLR -40 334 288 2 1745 255 290 11 21 chr4 152148268 152148363 -3481757 - MER5A DNA MER1_type -33 156 63 2 1745 222 116 0 0 chr4 152150970 152151013 -3479107 + (C)n Simple_repeat Simple_repeat 1 43 0 2 1745 359 212 197 33 chr4 152151412 152151594 -3478526 - MER74A LTR ERVL -216 406 148 2 1745 503 237 6 0 chr4 152151734 152151890 -3478230 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 1745 235 279 29 14 chr4 152151928 152151997 -3478123 - MTEa LTR MaLR -17 362 293 2 1745 222 117 16 48 chr4 152152165 152152228 -3477892 + T-rich Low_complexity Low_complexity 1 61 0 2 1745 819 119 0 0 chr4 152152249 152152375 -3477745 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 2 1745 22 0 0 0 chr4 152154967 152154989 -3475131 + AT_rich Low_complexity Low_complexity 1 22 0 2 1745 288 0 0 0 chr4 152155217 152155249 -3474871 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1745 424 283 29 0 chr4 152155254 152155427 -3474693 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1745 231 36 0 0 chr4 152155474 152155502 -3474618 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1745 618 113 0 0 chr4 152155502 152155599 -3474521 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 1745 355 247 22 33 chr4 152155626 152155842 -3474278 + (TCTA)n Simple_repeat Simple_repeat 1 213 0 2 1745 367 310 20 26 chr4 152156249 152156604 -3473516 + (CACCT)n Simple_repeat Simple_repeat 1 352 0 2 1745 583 324 48 61 chr4 152156634 152156864 -3473256 + MER44D DNA MER2_type 1 227 -478 2 1745 268 221 198 0 chr4 152156902 152156988 -3473132 + MER44D DNA MER2_type 322 424 -281 2 1745 397 180 35 18 chr4 152157039 152157209 -3472911 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 2 1745 717 295 45 70 chr4 152157272 152157603 -3472517 + ORR1E LTR MaLR 36 368 -11 2 1745 963 90 18 0 chr4 152159830 152159996 -3470124 + (CCAA)n Simple_repeat Simple_repeat 2 170 0 2 1745 225 149 45 0 chr4 152160011 152160078 -3470042 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 2 1745 384 231 15 114 chr4 152160114 152160246 -3469874 - RMER10B LTR ERVL -30 368 250 2 1745 959 124 17 6 chr4 152161098 152161276 -3468844 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1745 400 143 24 0 chr4 152161315 152161399 -3468721 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 2 1745 2541 71 6 6 chr4 152161696 152162023 -3468097 - ORR1A2 LTR MaLR 0 327 1 2 1745 974 144 0 6 chr4 152162040 152162221 -3467899 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1745 2815 22 0 191 chr4 152163495 152163946 -3466174 - RLTR10B2 LTR ERVK 0 365 1 2 1745 298 203 125 0 chr4 152164090 152164154 -3465966 + ORR1E LTR MaLR 163 234 -125 2 1745 234 269 158 21 chr4 152164984 152165079 -3465041 + MLT1C LTR MaLR 7 114 -353 2 1745 890 262 57 9 chr4 152165132 152165344 -3464776 + ID_B1 SINE B4 2 223 -1 2 1745 252 266 109 50 chr4 152166413 152166532 -3463588 + MER20 DNA MER1_type 55 180 -39 2 1745 384 169 33 11 chr4 152171092 152171182 -3458938 + BC1_Mm scRNA scRNA 1 92 -60 2 1745 267 338 67 107 chr4 152171802 152172147 -3457973 - MLT1B LTR MaLR -26 364 34 3 1745 392 246 0 0 chr4 152172767 152172901 -3457219 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 3 1745 2056 172 55 48 chr4 152173094 152173510 -3456610 - MTD LTR MaLR 0 419 1 3 1745 282 234 119 18 chr4 152173935 152174044 -3456076 + RMER5 LTR ERV1 69 188 -346 3 1745 519 153 0 0 chr4 152174063 152174161 -3455959 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 1746 632 269 0 8 chr4 152174639 152174770 -3455350 + RSINE1 SINE B4 3 132 -33 3 1746 711 89 0 63 chr4 152175413 152175604 -3454516 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1746 669 93 57 17 chr4 152175625 152175858 -3454262 + (TG)n Simple_repeat Simple_repeat 1 242 0 3 1746 546 248 0 102 chr4 152175858 152176015 -3454105 - B3A SINE B2 -16 182 42 3 1746 493 370 32 8 chr4 152176902 152177155 -3452965 - MLT1B LTR MaLR -119 271 13 3 1746 427 164 39 0 chr4 152177759 152177887 -3452233 + GA-rich Low_complexity Low_complexity 2 134 0 3 1746 257 324 147 0 chr4 152178437 152178573 -3451547 + Tigger5 DNA MER2_type 2251 2406 0 3 1746 414 0 0 0 chr4 152179719 152179765 -3450355 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1746 351 282 13 0 chr4 152180230 152180308 -3449812 - RSINE1 SINE B4 -85 80 2 3 1746 396 0 0 0 chr4 152181835 152181879 -3448241 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1746 487 228 17 42 chr4 152181892 152182011 -3448109 - RSINE1 SINE B4 -39 126 11 3 1746 1029 243 75 96 chr4 152184147 152184534 -3445586 + MTE2a LTR MaLR 1 379 0 3 1746 243 39 77 19 chr4 152185407 152185459 -3444661 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 3 1746 1249 48 0 0 chr4 152185459 152185605 -3444515 - B1_Mus2 SINE Alu 0 147 2 3 1746 362 292 94 55 chr4 152186368 152186549 -3443571 - MLT1D LTR MaLR -298 207 20 3 1746 414 0 0 0 chr4 152186577 152186623 -3443497 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1746 558 263 130 30 chr4 152187239 152187526 -3442594 - L1MA4 LINE L1 -282 6018 5711 3 1746 312 333 28 0 chr4 152187633 152187774 -3442346 + L1M2 LINE L1 5075 5219 -924 3 1746 1563 185 142 6 chr4 152188423 152188754 -3441366 + ORR1C1 LTR MaLR 3 378 0 3 1746 364 357 28 21 chr4 152188771 152188984 -3441136 - Lx8 LINE L1 -425 7219 6872 3 1746 553 343 42 0 chr4 152188984 152189200 -3440920 + Lx9 LINE L1 7280 7504 -140 3 1746 1458 66 0 4 chr4 152189209 152189454 -3440666 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 3 1746 462 71 36 0 chr4 152189805 152189889 -3440231 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1746 459 0 0 0 chr4 152190783 152190834 -3439286 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1746 429 20 0 0 chr4 152191292 152191342 -3438778 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1746 254 258 50 61 chr4 152191459 152191558 -3438562 + L1MC4 LINE L1 6973 7070 -972 3 1746 1561 165 105 54 chr4 152191804 152191990 -3438130 - RMER17C LTR ERVK 0 410 200 3 1746 961 0 15 23 chr4 152191990 152192122 -3437998 + (GAGAA)n Simple_repeat Simple_repeat 5 135 0 3 1746 1561 165 105 54 chr4 152192122 152192325 -3437795 - RMER17C LTR ERVK -211 199 1 3 1746 354 250 0 0 chr4 152194339 152194419 -3435701 - L2a LINE L2 0 3426 3347 3 1746 244 326 71 14 chr4 152194922 152195062 -3435058 + L1MB1 LINE L1 5814 5961 -228 3 1746 395 225 18 6 chr4 152195250 152195420 -3434700 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 1746 397 233 17 22 chr4 152195435 152195615 -3434505 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1746 257 320 31 10 chr4 152196008 152196033 -3434087 - ID_B1 SINE B4 -116 108 9 3 1746 292 292 0 14 chr4 152196033 152196106 -3434014 - ID4 SINE ID -3 80 9 3 1746 2445 130 3 0 chr4 152196570 152196915 -3433205 - ORR1A1 LTR MaLR 0 346 1 3 1746 356 306 84 57 chr4 152197097 152197360 -3432760 - MLT1C LTR MaLR -79 388 119 3 1746 345 47 0 0 chr4 152198408 152198451 -3431669 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 3 1746 353 176 8 50 chr4 152199313 152199433 -3430687 + G-rich Low_complexity Low_complexity 1 115 0 3 1746 444 37 0 0 chr4 152200018 152200072 -3430048 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 3 1746 623 209 14 61 chr4 152200084 152200232 -3429888 - B3A SINE B2 -57 141 1 3 1746 353 262 17 45 chr4 152200559 152200735 -3429385 + G-rich Low_complexity Low_complexity 2 172 0 3 1746 635 266 14 0 chr4 152201120 152201263 -3428857 + RSINE1 SINE B4 2 146 -19 3 1746 432 0 0 0 chr4 152201297 152201345 -3428775 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1746 2628 108 87 50 chr4 152202907 152203365 -3426755 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1746 354 247 46 174 chr4 152204381 152204577 -3425543 - RLTR14 LTR ERV1 -2 380 210 3 1746 277 244 11 32 chr4 152204984 152205077 -3425043 + CT-rich Low_complexity Low_complexity 5 95 0 3 1746 1120 265 128 6 chr4 152205079 152205439 -3424681 + MTD LTR MaLR 1 404 -15 3 1746 263 297 0 42 chr4 152205456 152205551 -3424569 + CT-rich Low_complexity Low_complexity 1 91 0 3 1746 1039 273 74 25 chr4 152206703 152207193 -3422927 + L1MB5 LINE L1 5589 6127 -51 3 1746 362 304 64 124 chr4 152208705 152208987 -3421133 + ORR1E LTR MaLR 50 314 -45 3 1746 2919 122 24 19 chr4 152209016 152209442 -3420678 + RLTR23 LTR ERV1 3 430 0 3 1746 389 288 136 23 chr4 152210842 152211062 -3419058 - MLT1C LTR MaLR -6 461 217 3 1746 264 283 38 57 chr4 152211125 152211230 -3418890 + LTR33B LTR ERVL 396 498 -5 3 1746 677 270 34 30 chr4 152211780 152212017 -3418103 + B4A SINE B4 2 239 -53 3 1746 941 100 24 0 chr4 152212087 152212257 -3417863 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 3 1746 549 0 0 0 chr4 152212269 152212330 -3417790 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1746 1833 215 28 2 chr4 152212331 152212728 -3417392 + MTD LTR MaLR 13 419 0 3 1746 489 76 0 0 chr4 152213441 152213507 -3416613 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1746 199 277 94 24 chr4 152214699 152214784 -3415336 + MIRb SINE MIR 119 209 -59 3 1746 413 308 59 27 chr4 152215160 152215488 -3414632 - ORR1E LTR MaLR 0 379 1 3 1746 2220 163 51 5 chr4 152216460 152216855 -3413265 - MTC LTR MaLR -8 413 1 3 1746 272 354 47 2 chr4 152218739 152218849 -3411271 + PB1D10 SINE Alu 7 122 -27 3 1746 881 300 102 8 chr4 152219042 152219395 -3410725 - MTD LTR MaLR -32 387 2 3 1746 7693 43 6 1 chr4 152220896 152222036 -3408084 - L1Md_F2 LINE L1 -2 6580 5434 3 1746 5863 47 1 0 chr4 152222034 152222772 -3407348 + L1_Mm LINE L1 4875 5613 -270 3 1746 471 78 0 0 chr4 152222823 152222887 -3407233 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 3 1746 673 236 18 28 chr4 152222887 152223077 -3407043 - B3A SINE B2 -16 200 17 3 1746 262 309 75 48 chr4 152223301 152223447 -3406673 + MLT1B LTR MaLR 220 369 -21 3 1746 1053 298 59 54 chr4 152223919 152224291 -3405829 + MTEa LTR MaLR 2 375 -4 3 1746 238 293 119 17 chr4 152225675 152225793 -3404327 - MER31A LTR ERV1 -17 468 339 3 1746 230 256 83 24 chr4 152225850 152225934 -3404186 - MER31A LTR ERV1 -240 245 157 3 1746 276 77 0 0 chr4 152227093 152227132 -3402988 + (TATG)n Simple_repeat Simple_repeat 1 39 0 3 1746 1183 239 65 91 chr4 152227155 152227538 -3402582 - ORR1D1 LTR MaLR -1 373 1 3 1746 227 114 0 22 chr4 152227597 152227642 -3402478 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 3 1746 818 115 13 13 chr4 152227657 152227815 -3402305 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 3 1746 793 163 23 3 chr4 152227831 152228141 -3401979 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 3 1746 299 341 24 6 chr4 152228161 152228329 -3401791 + (TTCA)n Simple_repeat Simple_repeat 3 173 0 3 1746 476 283 17 23 chr4 152228272 152228524 -3401596 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 3 1746 192 97 0 0 chr4 152228622 152228653 -3401467 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 3 1746 2089 128 0 57 chr4 152229741 152230090 -3400030 - ORR1A4 LTR MaLR 0 329 1 3 1746 10993 106 40 93 chr4 152230091 152232163 -3397957 - ORR1A4-int LTR MaLR -1 1962 1 3 1746 2188 122 3 0 chr4 152232163 152232491 -3397629 - ORR1A4 LTR MaLR 0 329 1 3 1746 199 310 0 17 chr4 152232928 152232987 -3397133 + L2c LINE L2 3098 3155 -232 3 1746 2346 162 82 63 chr4 152233691 152234230 -3395890 - RLTR18 LTR ERVK -27 589 41 3 1746 231 267 17 0 chr4 152234821 152234881 -3395239 + MLT1H LTR MaLR 489 549 0 3 1746 1300 92 0 10 chr4 152235021 152235218 -3394902 - B2_Mm2 SINE B2 0 195 1 3 1746 378 61 0 0 chr4 152236361 152236410 -3393710 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1746 209 222 0 0 chr4 152237778 152237823 -3392297 + A-rich Low_complexity Low_complexity 1 45 0 3 1746 243 358 124 11 chr4 152238040 152238218 -3391902 - B4 SINE B4 -2 290 93 3 1746 285 227 43 70 chr4 152239495 152239680 -3390440 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1746 388 293 191 31 chr4 152239743 152239905 -3390215 - B4A SINE B4 -78 214 27 3 1746 421 214 69 31 chr4 152240084 152240214 -3389906 - HAL1 LINE L1 -331 2176 2042 3 1746 1304 226 92 34 chr4 152240688 152241046 -3389074 - MTEa LTR MaLR 0 379 1 3 1746 237 320 0 0 chr4 152241273 152241401 -3388719 + (CCTG)n Simple_repeat Simple_repeat 1 128 0 3 1746 965 204 128 56 chr4 152241708 152242014 -3388106 - MTD LTR MaLR -91 328 1 3 1746 303 200 0 0 chr4 152242333 152242393 -3387727 + RLTR11A LTR ERVK 1 60 -468 3 1746 928 222 128 77 chr4 152242407 152242744 -3387376 + RLTR11A LTR ERVK 104 457 -71 3 1746 975 117 0 0 chr4 152242744 152242985 -3387135 + (TG)n Simple_repeat Simple_repeat 1 241 0 3 1746 263 216 0 86 chr4 152242986 152243067 -3387053 + RLTR11A LTR ERVK 451 524 -3 3 1746 402 263 7 22 chr4 152243618 152243754 -3386366 - MLT1A1 LTR MaLR 0 408 275 3 1746 1010 255 109 23 chr4 152243964 152244313 -3385807 - MTEb LTR MaLR 0 379 1 3 1746 1627 161 61 18 chr4 152244673 152245002 -3385118 + ORR1D1 LTR MaLR 32 374 0 3 1746 509 202 95 16 chr4 152245672 152245798 -3384322 + MLT1B LTR MaLR 40 175 -215 3 1746 1718 205 3 23 chr4 152245829 152246179 -3383941 + MTD LTR MaLR 15 357 -62 3 1746 387 0 0 0 chr4 152246257 152246300 -3383820 + (GGA)n Simple_repeat Simple_repeat 2 44 0 4 1746 315 289 38 38 chr4 152246320 152246457 -3383663 + MLT1B LTR MaLR 247 383 -7 3 1746 305 230 7 7 chr4 152246908 152247046 -3383074 + CT-rich Low_complexity Low_complexity 1 138 0 4 1746 406 319 48 38 chr4 152247076 152247342 -3382778 - B4A SINE B4 -18 274 2 4 1746 423 0 0 0 chr4 152247651 152247698 -3382422 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1746 551 292 111 15 chr4 152248477 152248675 -3381445 - Lx8 LINE L1 -134 7339 7123 4 1746 2000 104 3 62 chr4 152248676 152249015 -3381105 + ORR1A2 LTR MaLR 1 319 -8 4 1746 242 233 103 48 chr4 152249019 152249145 -3380975 - Lx8 LINE L1 -366 7107 6975 4 1746 262 273 45 18 chr4 152249234 152249272 -3380848 - B4A SINE B4 -174 118 4 4 1746 505 108 0 0 chr4 152249272 152249346 -3380774 - B3 SINE B2 -139 77 4 4 1746 589 305 109 27 chr4 152249360 152249690 -3380430 - RMER5 LTR ERV1 -144 390 34 4 1746 1006 166 67 5 chr4 152249772 152249966 -3380154 + B3 SINE B2 4 209 -7 4 1746 705 222 61 36 chr4 152254301 152254497 -3375623 + B3 SINE B2 2 202 -14 4 1746 390 285 17 41 chr4 152254507 152254679 -3375441 + (CA)n Simple_repeat Simple_repeat 1 168 0 4 1746 251 245 4 44 chr4 152254711 152254966 -3375154 + (CA)n Simple_repeat Simple_repeat 1 244 0 4 1746 288 235 0 0 chr4 152254971 152255039 -3375081 + B3 SINE B2 147 214 -2 4 1746 327 265 57 64 chr4 152255228 152255369 -3374751 - B3A SINE B2 0 198 59 4 1746 1694 134 57 160 chr4 152255398 152255823 -3374297 - ORR1C2 LTR MaLR -1 383 3 4 1746 357 345 95 19 chr4 152255841 152256051 -3374069 + MTE-int LTR MaLR 152 377 -1203 4 1746 1078 201 24 0 chr4 152256064 152256273 -3373847 - B3 SINE B2 0 216 3 4 1746 1098 271 88 49 chr4 152256572 152256957 -3373163 + MTD LTR MaLR 6 405 -14 4 1746 226 262 246 45 chr4 152257064 152257288 -3372832 + MTE-int LTR MaLR 768 1036 -544 4 1746 5027 158 27 17 chr4 152257288 152258236 -3371884 + RMER17B LTR ERVK 1 958 0 4 1746 759 255 52 35 chr4 152258354 152258699 -3371421 + RLTR15 LTR ERVK 5 355 -4 4 1746 1357 58 15 35 chr4 152258824 152259022 -3371098 - B2_Mm2 SINE B2 -1 194 1 4 1746 441 341 60 67 chr4 152259040 152259323 -3370797 + MTE-int LTR MaLR 1289 1569 -11 4 1746 228 306 11 86 chr4 152259626 152259719 -3370401 + MLT1A1 LTR MaLR 44 129 -236 4 1746 264 325 67 37 chr4 152259831 152259965 -3370155 + MLT1A1 LTR MaLR 269 406 -2 4 1746 414 359 0 12 chr4 152263255 152263427 -3366693 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 4 1746 1640 225 40 24 chr4 152263526 152263947 -3366173 + MTD LTR MaLR 1 379 0 4 1746 476 358 39 68 chr4 152264355 152264494 -3365626 - MER89 LTR ERV1 -4 555 407 4 1746 4389 126 46 21 chr4 152264494 152265284 -3364836 - RMER17D2 LTR ERVK 0 809 1 4 1746 476 358 39 68 chr4 152265284 152265323 -3364797 - MER89 LTR ERV1 -153 406 369 4 1746 1308 166 82 136 chr4 152265323 152265714 -3364406 + ORR1D1 LTR MaLR 5 374 0 4 1746 476 358 39 68 chr4 152265714 152265918 -3364202 - MER89 LTR ERV1 -191 368 183 4 1746 261 0 0 0 chr4 152266364 152266393 -3363727 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 4 1746 536 316 71 44 chr4 152266854 152267079 -3363041 + ORR1E LTR MaLR 1 231 -128 4 1746 374 201 65 0 chr4 152267687 152267856 -3362264 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 4 1746 331 205 64 0 chr4 152267882 152268038 -3362082 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 4 1746 331 209 68 0 chr4 152268065 152268390 -3361730 + (CACAC)n Simple_repeat Simple_repeat 1 347 0 4 1746 353 215 67 0 chr4 152268147 152268436 -3361684 + (CACCC)n Simple_repeat Simple_repeat 1 308 0 4 1746 295 234 0 72 chr4 152268704 152268787 -3361333 + RSINE1 SINE B4 83 159 -6 4 1746 375 319 100 45 chr4 152268880 152269100 -3361020 + B4 SINE B4 12 243 -49 4 1746 267 357 18 82 chr4 152269750 152269921 -3360199 - MLT1A1 LTR MaLR -5 403 244 4 1746 462 361 93 12 chr4 152270723 152271130 -3358990 + MER31A LTR ERV1 46 485 0 4 1746 191 191 0 60 chr4 152271270 152271320 -3358800 - L3 LINE CR1 -2475 2014 1968 4 1746 308 235 66 0 chr4 152271871 152272037 -3358083 + (CACCC)n Simple_repeat Simple_repeat 4 180 0 4 1746 214 256 50 0 chr4 152272099 152272220 -3357900 + (CAGCC)n Simple_repeat Simple_repeat 4 130 0 4 1746 269 279 13 0 chr4 152272806 152272885 -3357235 + ORR1E LTR MaLR 39 118 -241 4 1746 396 0 0 0 chr4 152273224 152273268 -3356852 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1746 555 223 154 0 chr4 152273278 152273408 -3356712 - B3A SINE B2 -47 151 2 4 1746 528 341 70 48 chr4 152273854 152274455 -3355665 + L1MEf LINE L1 979 1592 -4608 4 1746 613 264 32 0 chr4 152274715 152274870 -3355250 + RSINE1 SINE B4 6 165 0 4 1746 210 37 0 0 chr4 152274874 152274901 -3355219 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1746 946 170 60 5 chr4 152275309 152275510 -3354610 - RMER1B Other Other -2 1064 853 4 1746 387 335 119 28 chr4 152275616 152275908 -3354212 + ORR1E LTR MaLR 15 375 -4 4 1746 494 287 108 25 chr4 152277927 152278257 -3351863 - MLT1C LTR MaLR -22 483 106 4 1746 578 328 62 4 chr4 152278261 152278518 -3351602 + B4 SINE B4 3 274 -18 4 1746 834 148 0 0 chr4 152279051 152279213 -3350907 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1746 531 144 0 0 chr4 152279227 152279324 -3350796 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1746 190 255 0 0 chr4 152280506 152280553 -3349567 + L2 LINE L2 2659 2705 -714 4 1746 306 305 34 41 chr4 152280554 152280620 -3349500 + HAL1-2a_MD LINE L1 2346 2411 -613 4 1746 1038 144 0 0 chr4 152280620 152280800 -3349320 + (CCA)n Simple_repeat Simple_repeat 1 180 0 4 1746 504 291 25 12 chr4 152280800 152280960 -3349160 + HAL1-2a_MD LINE L1 2346 2507 -517 4 1746 489 204 12 6 chr4 152281080 152281253 -3348867 + (CA)n Simple_repeat Simple_repeat 1 174 0 4 1746 382 207 29 0 chr4 152281281 152281455 -3348665 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1746 3417 198 101 22 chr4 152282795 152283184 -3346936 + RMER17B LTR ERVK 1 435 -523 4 1746 360 0 0 0 chr4 152283184 152283224 -3346896 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1746 3417 198 101 22 chr4 152283224 152283722 -3346398 + RMER17B LTR ERVK 436 957 -1 4 1746 408 293 160 28 chr4 152283920 152284064 -3346056 - B4 SINE B4 -5 287 125 4 1746 261 298 19 28 chr4 152284229 152284336 -3345784 - B4 SINE B4 -184 108 3 4 1746 504 205 0 0 chr4 152285092 152285253 -3344867 + (CA)n Simple_repeat Simple_repeat 2 162 0 4 1746 312 214 77 22 chr4 152285262 152285353 -3344767 + HAL1-3A_ME LINE L1 1976 2071 -787 4 1746 600 182 17 0 chr4 152286155 152286331 -3343789 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1746 209 209 15 0 chr4 152286347 152286414 -3343706 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1746 465 204 200 79 chr4 152286419 152286659 -3343461 - B4 SINE B4 0 292 24 4 1746 741 201 0 40 chr4 152286745 152286895 -3343225 - B1_Mur1 SINE Alu -1 148 5 4 1746 291 114 0 0 chr4 152287040 152287084 -3343036 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1746 625 238 131 51 chr4 152287677 152287952 -3342168 - RMER21B LTR ERV1 -289 553 257 4 1746 255 363 118 30 chr4 152288297 152288567 -3341553 + MLT1K LTR MaLR 99 392 -203 4 1746 756 179 13 20 chr4 152288584 152288890 -3341230 + G-rich Low_complexity Low_complexity 1 303 0 4 1746 891 187 3 0 chr4 152289524 152289917 -3340203 + (TG)n Simple_repeat Simple_repeat 1 394 0 4 1746 597 64 0 0 chr4 152290150 152290228 -3339892 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 4 1746 422 288 24 0 chr4 152290228 152290353 -3339767 - B1F1 SINE Alu -21 128 1 4 1746 611 196 0 0 chr4 152290242 152290354 -3339766 - ID_B1 SINE B4 -32 192 81 4 1746 332 357 81 25 chr4 152290473 152290709 -3339411 - MIRc SINE MIR -8 260 12 4 1746 960 144 0 0 chr4 152291359 152291827 -3338293 + (TG)n Simple_repeat Simple_repeat 1 468 0 4 1746 470 294 50 6 chr4 152291987 152292148 -3337972 + MLT1B LTR MaLR 8 175 -215 4 1746 1579 253 118 35 chr4 152292322 152292863 -3337257 + RCHARR1 DNA MER1_type 1 586 -388 4 1746 1794 196 22 6 chr4 152293428 152293788 -3336332 - MTC LTR MaLR 0 421 56 4 1746 3040 162 104 28 chr4 152293791 152294482 -3335638 + RLTR22_Mur LTR ERVK 4 747 -1101 4 1746 271 280 29 106 chr4 152294564 152294772 -3335348 + RLTR22_Mur LTR ERVK 888 1079 -769 4 1746 943 181 74 9 chr4 152294896 152295113 -3335007 + RLTR22_Mur LTR ERVK 1592 1822 -26 4 1746 307 164 0 76 chr4 152295129 152295195 -3334925 - MTC LTR MaLR -360 61 1 4 1746 951 198 101 19 chr4 152296483 152296790 -3333330 - ORR1C2 LTR MaLR 0 384 15 4 1746 837 255 81 103 chr4 152296985 152297404 -3332716 - MTD LTR MaLR -9 410 1 4 1746 636 50 0 0 chr4 152297871 152297951 -3332169 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 1746 615 150 88 0 chr4 152298116 152298229 -3331891 - B1_Mus1 SINE Alu -6 142 20 4 1746 247 280 68 29 chr4 152298155 152298258 -3331862 - MT2B LTR ERVL -344 257 151 4 1746 893 223 11 5 chr4 152298433 152298622 -3331498 - B3A SINE B2 -5 193 4 4 1746 270 0 0 0 chr4 152299719 152299749 -3330371 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1746 960 124 62 0 chr4 152299749 152299926 -3330194 - RLTR16 LTR ERVK -163 342 155 4 1746 261 0 0 0 chr4 152299939 152299968 -3330152 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1746 800 170 20 7 chr4 152299977 152300125 -3329995 - RLTR16 LTR ERVK -355 150 1 4 1746 240 176 78 0 chr4 152300125 152300176 -3329944 - MTD LTR MaLR -35 386 332 4 1746 246 81 0 0 chr4 152300330 152300367 -3329753 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1746 1085 61 7 7 chr4 152300473 152300621 -3329499 + B1_Mus1 SINE Alu 1 148 0 4 1746 303 113 0 0 chr4 152300636 152300689 -3329431 + (CAAA)n Simple_repeat Simple_repeat 3 55 0 4 1746 540 0 0 0 chr4 152300883 152300943 -3329177 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1746 188 34 0 33 chr4 152301362 152301392 -3328728 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1746 667 216 84 20 chr4 152301663 152301949 -3328171 - ORR1E LTR MaLR -14 405 15 4 1746 833 248 117 11 chr4 152302209 152302482 -3327638 - MTD LTR MaLR -63 356 55 4 1746 237 159 0 0 chr4 152302967 152303011 -3327109 + GA-rich Low_complexity Low_complexity 1 44 0 4 1747 262 220 17 0 chr4 152305746 152305805 -3324315 - L1M5 LINE L1 -276 5848 5789 4 1747 658 114 26 0 chr4 152305954 152306068 -3324052 + (TTCCC)n Simple_repeat Simple_repeat 5 121 0 4 1747 494 286 15 15 chr4 152306143 152306278 -3323842 + RSINE1 SINE B4 2 136 -29 4 1747 337 242 6 19 chr4 152306430 152306590 -3323530 + (TG)n Simple_repeat Simple_repeat 1 158 0 4 1747 603 84 0 0 chr4 152306869 152306964 -3323156 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1747 443 239 6 0 chr4 152307020 152307187 -3322933 + (CA)n Simple_repeat Simple_repeat 2 169 0 4 1747 327 96 0 19 chr4 152307198 152307251 -3322869 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1747 1198 232 145 14 chr4 152307680 152308038 -3322082 + MTD LTR MaLR 1 405 -14 5 1747 1302 168 231 6 chr4 152308482 152308827 -3321293 - RLTR23 LTR ERV1 0 430 10 5 1747 212 362 0 33 chr4 152309456 152309636 -3320484 + (CCCA)n Simple_repeat Simple_repeat 1 174 0 5 1747 2373 123 29 0 chr4 152310842 152311225 -3318895 + ORR1B1 LTR MaLR 1 394 0 5 1747 650 326 79 59 chr4 152312407 152312811 -3317309 + MTD LTR MaLR 8 419 0 5 1747 381 340 20 14 chr4 152313638 152313784 -3316336 - MTEa LTR MaLR -18 361 215 5 1747 198 0 0 160 chr4 152313798 152313967 -3316153 + (CAGAG)n Simple_repeat Simple_repeat 5 146 0 5 1747 670 272 107 19 chr4 152313972 152314178 -3315942 - MTEa LTR MaLR -155 224 1 5 1747 234 216 26 0 chr4 152314983 152315039 -3315081 - MLT1H2 LTR MaLR -335 177 81 5 1747 471 18 0 0 chr4 152316061 152316117 -3314003 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1747 565 314 84 15 chr4 152316370 152316762 -3313358 + L1M2 LINE L1 5345 5763 -528 5 1747 2757 47 175 5 chr4 152316922 152317328 -3312792 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1747 6324 48 12 19 chr4 152317330 152318165 -3311955 - IAPEz-int LTR ERVK -2 6479 5651 5 1747 2607 73 0 3 chr4 152318158 152318501 -3311619 - IAPEz-int LTR ERVK -4781 1700 1359 5 1747 3287 63 22 16 chr4 152318501 152319067 -3311053 - IAPEz-int LTR ERVK -5819 662 168 5 1747 228 250 0 0 chr4 152319067 152319111 -3311009 - RLTR27 LTR ERVK -34 275 232 5 1747 1178 108 26 62 chr4 152319114 152319484 -3310636 - IAPEz-int LTR ERVK -7312 269 9 5 1747 2738 47 175 5 chr4 152319485 152319891 -3310229 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1747 306 87 0 0 chr4 152319968 152320014 -3310106 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1747 346 261 6 6 chr4 152320127 152320304 -3309816 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1747 469 248 31 61 chr4 152320321 152320484 -3309636 - RSINE1 SINE B4 0 165 8 5 1747 1551 232 45 8 chr4 152320974 152321374 -3308746 + MTD LTR MaLR 5 419 0 5 1747 192 135 0 0 chr4 152321753 152321790 -3308330 + (CCCTA)n Simple_repeat Simple_repeat 1 37 0 5 1747 1880 169 122 28 chr4 152321790 152321888 -3308232 - RLTR16 LTR ERVK 0 505 413 5 1747 405 0 0 0 chr4 152321888 152321933 -3308187 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1747 1880 169 122 28 chr4 152321933 152322291 -3307829 - RLTR16 LTR ERVK -93 412 8 5 1747 877 266 29 25 chr4 152322660 152322941 -3307179 - B4A SINE B4 -10 282 1 5 1747 538 237 157 51 chr4 152323451 152323629 -3306491 + B3A SINE B2 1 197 -1 5 1747 30 45 0 0 chr4 152323636 152323680 -3306440 + AT_rich Low_complexity Low_complexity 1 44 0 5 1747 718 228 82 10 chr4 152323682 152323877 -3306243 + B3 SINE B2 2 210 -6 5 1747 608 255 7 0 chr4 152323903 152324048 -3306072 + B1_Mur1 SINE Alu 1 146 -3 5 1747 530 319 43 65 chr4 152324649 152324927 -3305193 + B4A SINE B4 2 273 -19 5 1747 274 260 190 3 chr4 152325009 152325186 -3304934 - MLT1G LTR MaLR -129 466 241 5 1747 288 0 0 0 chr4 152328771 152328803 -3301317 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1747 414 0 0 0 chr4 152328803 152328849 -3301271 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1747 626 243 101 50 chr4 152330312 152330511 -3299609 + B4A SINE B4 84 292 0 5 1747 459 185 0 0 chr4 152330516 152330608 -3299512 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1747 456 19 0 0 chr4 152331488 152331541 -3298579 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1747 189 372 40 24 chr4 152331636 152331760 -3298360 + MIRc SINE MIR 22 147 -121 5 1747 1022 315 119 3 chr4 152331812 152332149 -3297971 - MTEa LTR MaLR -3 376 1 5 1747 289 274 0 0 chr4 152332160 152332233 -3297887 + (CCCA)n Simple_repeat Simple_repeat 4 76 0 5 1747 476 242 0 7 chr4 152332244 152332398 -3297722 + (TCCA)n Simple_repeat Simple_repeat 4 156 0 5 1747 426 320 14 7 chr4 152332517 152332665 -3297455 + (TCCA)n Simple_repeat Simple_repeat 1 149 0 5 1747 3367 31 8 3 chr4 152332666 152333058 -3297062 - MTA_Mm LTR MaLR 0 396 3 5 1747 926 127 6 0 chr4 152333058 152333216 -3296904 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 5 1747 504 106 0 0 chr4 152333245 152333330 -3296790 + (TCCA)n Simple_repeat Simple_repeat 2 86 0 5 1747 203 313 92 36 chr4 152333377 152333520 -3296600 - MIR SINE MIR -90 178 25 5 1747 573 15 0 0 chr4 152334316 152334382 -3295738 + (CTGTG)n Simple_repeat Simple_repeat 5 70 0 5 1747 1893 175 96 41 chr4 152334626 152335044 -3295076 + RMER10A LTR ERVL 1 441 -1 5 1747 664 314 45 11 chr4 152335531 152335798 -3294322 + B4A SINE B4 3 278 -14 5 1747 24 53 0 0 chr4 152335859 152335897 -3294223 + AT_rich Low_complexity Low_complexity 1 38 0 5 1747 525 216 264 37 chr4 152336191 152336404 -3293716 + MTE2b LTR MaLR 57 358 -61 5 1747 460 267 72 31 chr4 152336404 152336584 -3293536 - MTE2a LTR MaLR -1 418 243 5 1747 402 21 0 0 chr4 152336586 152336633 -3293487 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1747 248 266 72 65 chr4 152336633 152336786 -3293334 - MLT2B5 LTR ERVL -370 231 78 5 1747 421 177 178 3 chr4 152336669 152336795 -3293325 - MTE2a LTR MaLR -243 176 48 5 1747 349 279 189 28 chr4 152336992 152337345 -3292775 - L2a LINE L2 -178 3248 2826 5 1747 211 344 44 25 chr4 152337362 152337520 -3292600 + L2c LINE L2 3180 3340 -47 5 1747 329 170 0 19 chr4 152338041 152338095 -3292025 + HAL1-3A_ME LINE L1 1976 2028 -830 5 1747 518 211 0 6 chr4 152338100 152338281 -3291839 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1747 210 128 0 0 chr4 152338296 152338335 -3291785 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1747 321 113 0 70 chr4 152338398 152338455 -3291665 + HAL1-3A_ME LINE L1 1976 2028 -830 5 1747 276 185 0 0 chr4 152338528 152338582 -3291538 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1747 210 191 0 0 chr4 152338663 152338705 -3291415 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1747 357 24 0 0 chr4 152340666 152340708 -3289412 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1747 569 321 77 37 chr4 152340711 152340983 -3289137 - B4A SINE B4 0 292 10 5 1747 227 149 85 0 chr4 152341449 152341496 -3288624 + L2b LINE L2 3322 3372 -3 5 1747 321 221 0 45 chr4 152343436 152343592 -3286528 + (CATATA)n Simple_repeat Simple_repeat 4 152 0 5 1747 472 207 6 35 chr4 152343577 152343747 -3286373 + (CATA)n Simple_repeat Simple_repeat 4 168 0 5 1747 466 256 11 34 chr4 152343761 152343939 -3286181 + (CA)n Simple_repeat Simple_repeat 1 174 0 5 1747 261 83 0 0 chr4 152344000 152344036 -3286084 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1747 187 190 70 23 chr4 152345336 152345379 -3284741 - L4 LINE RTE -1609 420 376 5 1747 2943 81 5 5 chr4 152346436 152346831 -3283289 + MTB_Mm LTR MaLR 1 395 -12 5 1747 373 268 31 0 chr4 152346928 152347025 -3283095 - MLT1D LTR MaLR -68 437 338 5 1747 647 271 202 8 chr4 152347025 152347267 -3282853 + MLT1A0 LTR MaLR 1 289 -76 5 1747 258 326 11 43 chr4 152347368 152347461 -3282659 - MLT1D LTR MaLR -271 234 145 5 1747 304 350 0 28 chr4 152347698 152347804 -3282316 + MIRb SINE MIR 78 180 -88 5 1747 470 288 195 49 chr4 152349413 152349755 -3280365 - RMER20B LTR ERVK -38 589 180 5 1747 1423 249 44 33 chr4 152350364 152350725 -3279395 + MTEa LTR MaLR 2 366 -13 5 1747 182 275 11 0 chr4 152351404 152351495 -3278625 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1747 437 154 11 0 chr4 152351568 152351659 -3278461 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1747 260 304 43 21 chr4 152353665 152353759 -3276361 - MER74A LTR ERVL -309 249 154 5 1747 879 61 0 0 chr4 152353768 152353882 -3276238 + (CAGG)n Simple_repeat Simple_repeat 1 114 0 5 1747 453 264 199 6 chr4 152353983 152354139 -3275981 - MTD LTR MaLR -14 405 220 5 1747 237 108 0 0 chr4 152354139 152354176 -3275944 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 5 1747 3804 119 138 0 chr4 152354235 152354829 -3275291 - RLTR33 LTR ERVK 0 678 3 5 1747 427 322 79 17 chr4 152354969 152355053 -3275067 - MTD LTR MaLR -224 195 102 5 1747 240 59 0 0 chr4 152355053 152355087 -3275033 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1747 427 322 79 17 chr4 152355087 152355179 -3274941 - MTD LTR MaLR -318 101 9 5 1747 242 300 105 31 chr4 152355187 152355475 -3274645 + L1MD LINE L1 4011 4318 -1828 5 1747 286 269 89 36 chr4 152355648 152355760 -3274360 - L1MB2 LINE L1 -233 5938 5772 5 1747 1433 288 211 9 chr4 152355818 152356609 -3273511 + Lx8 LINE L1 6167 7117 -356 5 1747 336 178 0 0 chr4 152356616 152356689 -3273431 + GA-rich Low_complexity Low_complexity 5 77 0 5 1747 554 207 6 0 chr4 152356706 152356885 -3273235 + GA-rich Low_complexity Low_complexity 1 180 0 5 1747 618 261 28 33 chr4 152357256 152357470 -3272650 + Lx7 LINE L1 7477 7689 -7 5 1747 959 260 12 4 chr4 152357541 152357792 -3272328 - Lx6 LINE L1 -136 7324 7072 5 1747 302 324 113 54 chr4 152357804 152357990 -3272130 + L1MD LINE L1 4542 4738 -1408 5 1747 341 233 14 0 chr4 152357998 152358071 -3272049 - RSINE1 SINE B4 -85 80 7 5 1747 787 310 53 9 chr4 152358099 152358518 -3271602 + L1MD LINE L1 4908 5348 -798 5 1747 438 229 152 103 chr4 152358543 152358747 -3271373 - MER31A LTR ERV1 -42 443 230 5 1747 489 253 85 20 chr4 152358745 152358898 -3271222 + B3A SINE B2 21 183 -15 5 1747 486 182 6 30 chr4 152358900 152359064 -3271056 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1747 496 237 25 0 chr4 152359190 152359308 -3270812 + RSINE1 SINE B4 4 124 -41 5 1747 327 104 0 0 chr4 152359318 152359366 -3270754 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1747 462 18 0 0 chr4 152359366 152359420 -3270700 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1747 250 211 39 0 chr4 152359449 152359501 -3270619 - MER31A LTR ERV1 -431 54 1 5 1747 372 278 33 0 chr4 152360001 152360091 -3270029 + MTEa LTR MaLR 280 372 -7 5 1747 1657 181 97 9 chr4 152360309 152360732 -3269388 - RCHARR1 DNA MER1_type -3 971 512 5 1747 649 239 84 24 chr4 152360738 152360894 -3269226 + B3A SINE B2 1 166 -32 5 1747 566 14 0 14 chr4 152360894 152360966 -3269154 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1747 288 282 68 68 chr4 152361037 152361155 -3268965 - RCHARR1 DNA MER1_type -838 136 19 5 1747 992 194 97 20 chr4 152361585 152361780 -3268340 + B3 SINE B2 1 210 -6 5 1747 2710 45 225 0 chr4 152362247 152362603 -3267517 - RLTR10C LTR ERVK 0 436 1 5 1747 306 0 0 0 chr4 152363008 152363042 -3267078 + (TATG)n Simple_repeat Simple_repeat 3 36 0 5 1747 1094 272 68 98 chr4 152363092 152363605 -3266515 - MT2A LTR ERVL -35 498 1 5 1747 766 258 86 60 chr4 152363893 152364161 -3265959 + B4 SINE B4 2 276 -16 5 1747 507 45 0 0 chr4 152364186 152364252 -3265868 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1747 280 238 48 19 chr4 152365138 152365241 -3264879 + CT-rich Low_complexity Low_complexity 1 106 0 5 1747 395 284 48 10 chr4 152365489 152365592 -3264528 + B4 SINE B4 5 111 -181 6 1747 306 253 0 0 chr4 152365593 152365751 -3264369 + (TG)n Simple_repeat Simple_repeat 1 158 0 6 1747 267 254 0 0 chr4 152365783 152365921 -3264199 + (TG)n Simple_repeat Simple_repeat 1 138 0 6 1747 291 278 0 0 chr4 152365993 152366433 -3263687 + (TG)n Simple_repeat Simple_repeat 1 440 0 6 1747 409 227 0 74 chr4 152366578 152366673 -3263447 + RSINE1 SINE B4 78 165 0 6 1747 626 306 60 46 chr4 152368159 152368247 -3261873 + B4 SINE B4 11 95 -197 6 1747 2054 129 28 28 chr4 152368247 152368573 -3261547 - ORR1A3 LTR MaLR 0 326 1 6 1747 626 306 60 46 chr4 152368573 152368700 -3261420 + B4 SINE B4 96 229 -63 6 1747 226 340 28 46 chr4 152368714 152368805 -3261315 - RMER12 LTR ERVK -476 846 758 6 1747 243 216 59 0 chr4 152368805 152368856 -3261264 + ID4 SINE ID 1 54 -29 6 1747 843 264 164 7 chr4 152370347 152370634 -3259486 - MTEa LTR MaLR -29 350 19 6 1747 273 279 174 90 chr4 152371887 152372198 -3257922 - MLT1A1 LTR MaLR -71 337 1 6 1747 583 296 0 7 chr4 152374007 152374153 -3255967 - RSINE1 SINE B4 -19 146 2 6 1747 323 229 0 0 chr4 152374288 152374349 -3255771 + ORR1E LTR MaLR 7 67 -292 6 1747 777 245 9 2 chr4 152374468 152374656 -3255464 - B3A SINE B2 -6 210 20 6 1747 1655 144 235 64 chr4 152374910 152375267 -3254853 - MTC LTR MaLR -2 419 2 6 1747 378 310 0 0 chr4 152375395 152375540 -3254580 + (CATGC)n Simple_repeat Simple_repeat 5 149 0 6 1747 423 256 113 0 chr4 152375899 152376032 -3254088 - RSINE1 SINE B4 -16 149 2 6 1747 668 247 134 0 chr4 152376044 152376238 -3253882 - ID_B1 SINE B4 -4 220 1 6 1747 820 188 206 0 chr4 152376971 152377141 -3252979 - B3 SINE B2 -10 206 2 6 1747 225 0 0 0 chr4 152377603 152377628 -3252492 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1747 233 163 0 20 chr4 152378605 152378655 -3251465 + G-rich Low_complexity Low_complexity 3 51 0 6 1747 879 240 190 36 chr4 152379300 152379663 -3250457 + MTD LTR MaLR 1 419 0 6 1747 542 250 0 111 chr4 152379831 152379975 -3250145 + B3A SINE B2 24 151 -47 6 1747 408 40 0 0 chr4 152379977 152380027 -3250093 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1747 2712 150 29 4 chr4 152381056 152381472 -3248648 - RMER4A LTR ERVK 0 466 45 6 1747 366 23 0 0 chr4 152381472 152381515 -3248605 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1747 2712 150 29 4 chr4 152381515 152381553 -3248567 - RMER4A LTR ERVK -422 44 2 6 1747 450 340 118 41 chr4 152381658 152381798 -3248322 + B4A SINE B4 1 144 -148 6 1747 945 203 6 22 chr4 152381798 152381979 -3248141 + B3A SINE B2 4 181 -17 6 1747 450 340 118 41 chr4 152381979 152382108 -3248012 + B4A SINE B4 145 291 -1 6 1747 1224 243 89 56 chr4 152382215 152382607 -3247513 + MTD LTR MaLR 1 405 -14 6 1747 243 265 42 25 chr4 152382929 152383049 -3247071 - L1M5 LINE L1 -277 5885 5764 6 1747 690 322 17 0 chr4 152383232 152383406 -3246714 + B3A SINE B2 1 177 -21 6 1747 328 310 154 24 chr4 152383636 152383844 -3246276 - L1M5 LINE L1 -786 5360 5126 6 1747 475 308 99 99 chr4 152384035 152384407 -3245713 - ORR1E LTR MaLR 0 374 3 6 1747 975 248 79 22 chr4 152384444 152384783 -3245337 - MTD LTR MaLR 0 419 1 6 1747 378 302 23 8 chr4 152384969 152385099 -3245021 - L1M5 LINE L1 -1467 4679 4548 6 1747 1138 279 55 20 chr4 152385286 152385633 -3244487 - MTEa LTR MaLR 0 379 21 6 1747 770 299 126 36 chr4 152385676 152385985 -3244135 - MTD LTR MaLR -78 341 5 6 1747 246 217 0 0 chr4 152386245 152386314 -3243806 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1747 855 243 5 36 chr4 152386332 152386524 -3243596 - B3 SINE B2 -30 186 1 6 1747 474 321 14 115 chr4 152386680 152386898 -3243222 - RMER30 DNA MER1_type 0 202 7 6 1747 180 0 0 0 chr4 152387317 152387337 -3242783 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1747 405 0 0 0 chr4 152387337 152387381 -3242739 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1747 507 171 83 25 chr4 152387533 152387653 -3242467 + Lx9 LINE L1 7391 7517 -127 6 1747 257 55 53 35 chr4 152388087 152388144 -3241976 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 6 1747 541 277 14 0 chr4 152388345 152388493 -3241627 + Lx8 LINE L1 6328 6477 -996 6 1747 401 271 8 0 chr4 152388496 152388774 -3241346 + (CA)n Simple_repeat Simple_repeat 1 280 0 6 1747 423 0 0 0 chr4 152389150 152389197 -3240923 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1747 621 0 0 0 chr4 152390778 152390847 -3239273 + (GGA)n Simple_repeat Simple_repeat 3 71 0 6 1747 225 0 0 0 chr4 152391015 152391040 -3239080 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1747 279 0 0 0 chr4 152391040 152391070 -3239050 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1747 241 211 105 0 chr4 152391105 152391162 -3238958 + RLTR22_Mur LTR ERVK 1404 1466 -382 6 1747 478 305 0 3 chr4 152391223 152391522 -3238598 + (TG)n Simple_repeat Simple_repeat 1 297 0 6 1747 738 335 9 28 chr4 152391603 152391821 -3238299 - B4 SINE B4 -73 219 6 6 1747 227 239 183 0 chr4 152391935 152392006 -3238114 - MIRc SINE MIR -76 192 106 6 1747 21 0 0 0 chr4 152394031 152394052 -3236068 + AT_rich Low_complexity Low_complexity 1 21 0 6 1747 194 329 53 0 chr4 152394160 152394236 -3235884 - L2a LINE L2 -5 3421 3342 6 1747 377 353 115 20 chr4 152394767 152395157 -3234963 - L2a LINE L2 -392 3027 2601 6 1747 391 235 51 0 chr4 152395286 152395384 -3234736 - MTE2b LTR MaLR -2 377 275 6 1747 1713 161 34 3 chr4 152395384 152395677 -3234443 - ORR1B1 LTR MaLR 0 394 93 6 1747 7448 150 8 50 chr4 152395680 152397082 -3233038 - ORR1B1-int LTR MaLR -573 1390 48 6 1747 1208 112 0 27 chr4 152397082 152397266 -3232854 + RMER19A LTR ERVK 1 179 -558 6 1747 953 241 34 15 chr4 152397271 152397477 -3232643 - MTE2b LTR MaLR -165 214 5 6 1747 802 155 25 0 chr4 152398287 152398448 -3231672 + (TATG)n Simple_repeat Simple_repeat 2 166 0 6 1747 954 257 27 37 chr4 152398455 152398750 -3231370 - B4 SINE B4 0 292 1 6 1747 204 132 123 0 chr4 152399416 152399522 -3230598 + (CCCTAG)n Simple_repeat Simple_repeat 3 121 0 6 1747 223 141 127 0 chr4 152399563 152399676 -3230444 + (CCCTAG)n Simple_repeat Simple_repeat 1 127 0 6 1747 984 9 0 0 chr4 152400180 152400293 -3229827 + (GA)n Simple_repeat Simple_repeat 1 113 0 6 1747 211 200 0 0 chr4 152400786 152400826 -3229294 + T-rich Low_complexity Low_complexity 3 42 0 6 1747 333 318 19 0 chr4 152401539 152401646 -3228474 - PB1D10 SINE Alu -6 111 3 6 1747 365 198 11 0 chr4 152401700 152401791 -3228329 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1747 805 280 43 60 chr4 152401791 152402023 -3228097 - B4 SINE B4 0 292 65 6 1747 705 302 48 58 chr4 152402539 152402869 -3227251 - ORR1E LTR MaLR -32 327 1 6 1747 270 312 106 50 chr4 152402869 152403048 -3227072 + MLT1E1 LTR MaLR 460 648 -6 6 1747 1092 255 261 48 chr4 152403347 152403779 -3226341 + RMER15 LTR ERVL 49 572 -3 6 1747 257 214 17 51 chr4 152403934 152403993 -3226127 + MLT1A1 LTR MaLR 338 394 -14 6 1747 230 231 50 100 chr4 152404839 152404959 -3225161 + RLTR21 LTR ERVK 87 200 -1372 6 1747 1444 229 86 31 chr4 152404937 152405321 -3224799 + MTD LTR MaLR 15 419 0 6 1747 306 275 11 11 chr4 152405468 152405648 -3224472 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1747 539 345 0 0 chr4 152405659 152405836 -3224284 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1747 251 250 0 10 chr4 152405862 152405963 -3224157 + (CA)n Simple_repeat Simple_repeat 1 100 0 6 1747 198 171 0 0 chr4 152406329 152406370 -3223750 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1747 3354 51 2 0 chr4 152406502 152406897 -3223223 + MTA_Mm LTR MaLR 1 396 0 6 1747 694 246 67 55 chr4 152408392 152408646 -3221474 - MTE2a LTR MaLR 0 379 123 6 1747 441 332 134 28 chr4 152408857 152409074 -3221046 + MLT1D LTR MaLR 265 504 -1 6 1747 294 123 0 0 chr4 152409113 152409170 -3220950 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1747 3241 53 5 2 chr4 152409185 152409580 -3220540 + MTA_Mm LTR MaLR 1 396 0 6 1747 378 208 0 40 chr4 152409584 152409734 -3220386 + (TG)n Simple_repeat Simple_repeat 1 144 0 6 1747 883 259 18 36 chr4 152409739 152409959 -3220161 - B4A SINE B4 0 292 77 6 1747 1047 272 50 22 chr4 152411131 152411409 -3218711 + B4A SINE B4 7 292 0 6 1747 332 184 29 10 chr4 152411460 152411564 -3218556 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 1747 662 295 36 0 chr4 152412286 152412452 -3217668 + B3A SINE B2 6 177 -21 6 1747 773 92 76 0 chr4 152412624 152412743 -3217377 - B3 SINE B2 -87 129 2 6 1747 2405 92 0 9 chr4 152412888 152413217 -3216903 + ORR1A3 LTR MaLR 1 326 0 6 1747 3173 72 12 0 chr4 152413402 152413818 -3216302 + BGLII LTR ERVK 1 421 0 6 1747 3324 48 5 0 chr4 152415372 152415768 -3214352 + MTB LTR MaLR 1 398 -2 6 1747 511 251 8 11 chr4 152415952 152416217 -3213903 + GA-rich Low_complexity Low_complexity 1 264 0 6 1747 432 212 50 20 chr4 152418421 152418522 -3211598 - PB1D10 SINE Alu -2 115 12 6 1747 1269 263 41 3 chr4 152419925 152420245 -3209875 + MTEb LTR MaLR 41 372 -7 6 1747 328 321 92 62 chr4 152420500 152420792 -3209328 + L1MEc LINE L1 505 805 -5595 6 1747 601 270 22 7 chr4 152421008 152421171 -3208949 - MTE2a LTR MaLR 0 379 213 6 1747 376 297 131 65 chr4 152421209 152421454 -3208666 + L1MEc LINE L1 1192 1452 -4948 6 1747 505 204 0 0 chr4 152421721 152421824 -3208296 + L1MEc LINE L1 2262 2364 -4036 6 1747 2101 226 96 75 chr4 152422105 152423223 -3206897 + RMER1A Other Other 5 752 -278 6 1747 271 169 102 0 chr4 152423221 152423280 -3206840 + RMER1B Other Other 868 932 -134 6 1747 308 175 5 0 chr4 152423296 152423375 -3206745 + RMER1B Other Other 950 1055 -11 6 1747 435 280 0 78 chr4 152423429 152423557 -3206563 + B3A SINE B2 1 118 -80 6 1747 351 333 7 88 chr4 152423632 152423780 -3206340 + B3A SINE B2 63 198 0 6 1747 304 281 61 30 chr4 152424093 152424225 -3205895 + L1MEc LINE L1 2353 2488 -3831 6 1747 574 309 80 66 chr4 152424749 152425099 -3205021 + MLT1B LTR MaLR 19 373 -17 6 1747 401 247 91 52 chr4 152425747 152425901 -3204219 + RMER15 LTR ERVL 2 161 -414 6 1747 1043 260 27 14 chr4 152425902 152426195 -3203925 + RMER15 LTR ERVL 279 575 0 6 1747 747 229 44 78 chr4 152426383 152426587 -3203533 - B3A SINE B2 0 198 2 6 1747 1667 208 62 20 chr4 152428533 152428935 -3201185 + MTD LTR MaLR 1 419 0 6 1747 303 49 0 0 chr4 152429126 152429167 -3200953 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 6 1747 242 183 0 32 chr4 152429167 152429229 -3200891 + (TCTCTG)n Simple_repeat Simple_repeat 2 61 0 6 1747 246 62 0 0 chr4 152429230 152429262 -3200858 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1747 266 303 0 73 chr4 152429284 152429366 -3200754 - B4A SINE B4 0 292 217 7 1747 550 258 18 55 chr4 152429371 152429535 -3200585 - B3A SINE B2 0 198 41 7 1747 819 291 22 31 chr4 152429546 152429773 -3200347 - B4A SINE B4 -64 228 4 7 1747 483 18 0 0 chr4 152429809 152429865 -3200255 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1747 791 303 12 40 chr4 152430644 152430869 -3199251 + B4A SINE B4 49 270 -22 7 1747 306 87 0 0 chr4 152430869 152430915 -3199205 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1747 459 0 0 0 chr4 152430915 152430965 -3199155 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1747 791 303 12 40 chr4 152430965 152430989 -3199131 + B4A SINE B4 271 291 -1 7 1747 653 171 6 0 chr4 152431010 152431180 -3198940 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 1747 279 358 9 35 chr4 152431240 152431353 -3198767 + MTE2b LTR MaLR 3 112 -267 7 1747 901 272 40 4 chr4 152431355 152431529 -3198591 + ORR1E LTR MaLR 1 176 -183 7 1747 507 56 0 0 chr4 152431529 152431600 -3198520 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1747 901 263 270 2 chr4 152431600 152431749 -3198371 + ORR1E LTR MaLR 177 370 0 7 1747 1070 227 68 4 chr4 152431749 152431997 -3198123 + MTE2b LTR MaLR 110 373 -6 7 1747 913 288 64 32 chr4 152433754 152433896 -3196224 + B4 SINE B4 4 156 -136 7 1747 1318 232 86 29 chr4 152433896 152434246 -3195874 - ORR1D2 LTR MaLR 0 370 1 7 1747 913 288 64 32 chr4 152434246 152434383 -3195737 + B4 SINE B4 157 292 0 7 1747 281 365 31 0 chr4 152434545 152434641 -3195479 - L4 LINE RTE -1596 433 335 7 1747 1111 307 32 46 chr4 152435132 152435477 -3194643 + ORR1E LTR MaLR 2 341 -18 7 1747 187 335 112 31 chr4 152435672 152435832 -3194288 + L2b LINE L2 2919 3091 -284 7 1747 2291 169 15 36 chr4 152435987 152436399 -3193721 + MTD LTR MaLR 1 403 -16 7 1748 1431 216 118 3 chr4 152436792 152437155 -3192965 - MTD LTR MaLR -14 405 1 7 1748 225 242 113 0 chr4 152439036 152439098 -3191022 - MER74B LTR ERVL -68 554 486 7 1748 251 28 0 27 chr4 152439938 152439975 -3190145 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7 1748 796 260 221 13 chr4 152439976 152440284 -3189836 - MTE2b LTR MaLR -7 372 1 7 1748 1427 73 17 0 chr4 152440798 152440976 -3189144 + B2_Mm2 SINE B2 1 181 -14 7 1748 567 43 0 0 chr4 152440977 152441047 -3189073 + (GAGAA)n Simple_repeat Simple_repeat 4 73 0 7 1748 631 165 55 9 chr4 152441441 152441551 -3188569 + B3A SINE B2 1 115 -83 7 1748 583 240 26 33 chr4 152442015 152442166 -3187954 - B3A SINE B2 -42 156 7 7 1748 238 172 77 48 chr4 152442959 152443063 -3187057 + (CCCTG)n Simple_repeat Simple_repeat 2 108 0 7 1748 303 28 0 0 chr4 152443404 152443440 -3186680 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1748 265 273 65 0 chr4 152443445 152443522 -3186598 + MLT1A1 LTR MaLR 53 134 -240 7 1748 1746 162 28 66 chr4 152443531 152443953 -3186167 + RMER17C LTR ERVK 3 408 -2 7 1748 579 249 215 40 chr4 152444070 152444317 -3185803 + B4 SINE B4 3 292 0 7 1748 266 231 0 37 chr4 152444338 152444392 -3185728 + MLT1A1 LTR MaLR 250 301 -73 7 1748 183 80 0 0 chr4 152445707 152445732 -3184388 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 7 1748 1184 41 0 58 chr4 152445732 152445888 -3184232 - B1_Mm SINE Alu 0 147 1 7 1748 1348 186 0 5 chr4 152446164 152446386 -3183734 + RMER19B LTR ERVK 1 221 -681 7 1748 2810 159 79 26 chr4 152446413 152446942 -3183178 + RMER19B LTR ERVK 339 895 -7 7 1748 449 252 27 14 chr4 152446948 152447076 -3183044 + MLT1A1 LTR MaLR 265 408 0 7 1748 839 118 7 0 chr4 152447375 152447510 -3182610 + (GGA)n Simple_repeat Simple_repeat 2 137 0 7 1748 1101 88 4 0 chr4 152447510 152447761 -3182359 + (GAA)n Simple_repeat Simple_repeat 1 252 0 7 1748 330 26 0 0 chr4 152449521 152449560 -3180560 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1748 888 266 41 48 chr4 152449996 152450288 -3179832 + B4 SINE B4 3 292 0 7 1748 297 213 0 0 chr4 152450339 152450447 -3179673 + GA-rich Low_complexity Low_complexity 2 109 0 7 1748 489 324 0 0 chr4 152450789 152451014 -3179106 + (CCCCAG)n Simple_repeat Simple_repeat 1 225 0 7 1748 511 242 50 0 chr4 152451436 152451556 -3178564 + B4 SINE B4 145 270 -22 7 1748 201 62 0 86 chr4 152452388 152452423 -3177697 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1748 250 226 124 0 chr4 152452558 152452695 -3177425 + (CTCTG)n Simple_repeat Simple_repeat 1 154 0 7 1748 488 244 8 87 chr4 152452890 152453016 -3177104 - PB1D10 SINE Alu -1 116 1 7 1748 260 274 0 76 chr4 152452951 152453030 -3177090 - B4A SINE B4 -146 146 74 7 1748 190 308 0 15 chr4 152454495 152454561 -3175559 + MER5B DNA MER1_type 12 76 -102 7 1748 649 273 216 12 chr4 152454743 152454988 -3175132 + MTEa LTR MaLR 85 379 0 7 1748 629 313 83 60 chr4 152455491 152455756 -3174364 - B4 SINE B4 -14 278 8 7 1748 699 274 36 36 chr4 152456697 152456920 -3173200 + ID_B1 SINE B4 2 224 0 7 1748 180 200 250 0 chr4 152456962 152457022 -3173098 - MIR SINE MIR -113 95 21 7 1748 308 225 112 0 chr4 152458643 152458723 -3171397 - MTEb LTR MaLR -290 89 1 7 1748 2042 121 101 88 chr4 152458842 152459230 -3170890 - ORR1B1 LTR MaLR -1 393 1 7 1748 1002 80 0 0 chr4 152459304 152459441 -3170679 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 7 1748 908 202 135 10 chr4 152459445 152459645 -3170475 - MTD LTR MaLR 0 419 195 7 1748 1928 147 16 16 chr4 152459651 152459969 -3170151 + MTC LTR MaLR 104 421 0 7 1748 414 0 0 0 chr4 152460112 152460158 -3169962 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1748 4628 161 84 21 chr4 152460613 152461462 -3168658 + RMER19B LTR ERVK 1 902 0 7 1748 221 283 0 6 chr4 152461508 152461689 -3168431 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1748 510 301 0 0 chr4 152461721 152461897 -3168223 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1748 198 300 0 0 chr4 152461903 152462083 -3168037 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 7 1748 198 300 0 0 chr4 152462111 152462291 -3167829 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 7 1748 516 312 0 0 chr4 152462293 152462541 -3167579 + (TGAG)n Simple_repeat Simple_repeat 1 248 0 7 1748 366 294 16 16 chr4 152463470 152463598 -3166522 + GA-rich Low_complexity Low_complexity 5 132 0 7 1748 218 163 41 0 chr4 152464321 152464370 -3165750 + G-rich Low_complexity Low_complexity 1 51 0 7 1748 2239 91 56 43 chr4 152464698 152464952 -3165168 + ORR1A2 LTR MaLR 1 269 -58 7 1748 1334 77 21 16 chr4 152464952 152465138 -3164982 + B2_Mm1t SINE B2 1 187 -6 7 1748 2239 91 56 43 chr4 152465138 152465206 -3164914 + ORR1A2 LTR MaLR 270 327 0 7 1748 1062 230 9 5 chr4 152465520 152465734 -3164386 + B3 SINE B2 1 215 -1 7 1748 237 65 0 0 chr4 152465778 152465809 -3164311 + (CATA)n Simple_repeat Simple_repeat 2 32 0 7 1748 250 148 36 36 chr4 152465818 152465902 -3164218 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 7 1748 290 161 32 39 chr4 152465916 152466071 -3164049 + (TAGA)n Simple_repeat Simple_repeat 3 156 0 7 1748 238 278 241 0 chr4 152466422 152466555 -3163565 - ID_B1 SINE B4 -5 219 55 7 1748 649 209 87 92 chr4 152466824 152467019 -3163101 + B3A SINE B2 1 194 -4 7 1748 270 335 61 72 chr4 152468402 152468762 -3161358 - RMER17A2 LTR ERVK -477 429 74 7 1748 255 31 0 0 chr4 152469191 152469223 -3160897 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1748 534 319 0 27 chr4 152469932 152470080 -3160040 + B4A SINE B4 135 278 -14 7 1748 561 68 0 0 chr4 152470742 152470816 -3159304 + (TTCA)n Simple_repeat Simple_repeat 1 74 0 7 1748 227 346 0 24 chr4 152470837 152470920 -3159200 - L2a LINE L2 -34 3392 3312 7 1748 490 317 105 45 chr4 152471035 152471349 -3158771 - MTE-int LTR MaLR -27 1553 1221 7 1748 440 62 0 15 chr4 152471464 152471529 -3158591 + (TATG)n Simple_repeat Simple_repeat 4 67 0 7 1748 556 138 74 49 chr4 152471531 152471653 -3158467 + ORR1D1 LTR MaLR 6 130 -244 7 1748 330 130 0 55 chr4 152471663 152471736 -3158384 + ORR1B2 LTR MaLR 55 123 -244 7 1748 345 193 0 67 chr4 152471744 152471833 -3158287 + ORR1B2 LTR MaLR 41 123 -244 7 1748 234 122 0 75 chr4 152471837 152471890 -3158230 + ORR1B2 LTR MaLR 95 143 -241 7 1748 324 169 0 67 chr4 152471898 152471987 -3158133 + ORR1B2 LTR MaLR 41 123 -244 7 1748 1727 144 24 15 chr4 152472015 152472335 -3157785 + ORR1C2 LTR MaLR 62 384 0 7 1748 416 302 17 17 chr4 152472349 152472521 -3157599 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 7 1748 246 384 30 0 chr4 152473740 152473839 -3156281 - PB1D7 SINE Alu -13 107 6 7 1748 549 44 0 0 chr4 152473988 152474056 -3156064 + (TCC)n Simple_repeat Simple_repeat 3 70 0 7 1748 570 315 60 0 chr4 152474069 152474269 -3155851 + MTD LTR MaLR 3 214 -205 7 1748 715 277 131 35 chr4 152474361 152474705 -3155415 + MER31A LTR ERV1 8 384 -101 7 1748 566 248 32 0 chr4 152474735 152474860 -3155260 + MTE2b LTR MaLR 34 162 -217 7 1748 2561 178 73 85 chr4 152475098 152475767 -3154353 + RMER19B LTR ERVK 1 890 -12 7 1748 717 284 78 14 chr4 152476252 152476470 -3153650 + MTE2b LTR MaLR 148 379 0 7 1748 565 259 187 8 chr4 152477034 152477238 -3152882 - Lx8 LINE L1 -6 7467 7227 7 1748 513 0 0 0 chr4 152477238 152477295 -3152825 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1748 565 259 187 8 chr4 152477295 152477347 -3152773 - Lx8 LINE L1 -247 7226 7165 7 1748 735 321 60 0 chr4 152477351 152477600 -3152520 + Lx8 LINE L1 6556 6819 -654 7 1748 342 0 0 0 chr4 152477629 152477667 -3152453 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1748 531 179 12 0 chr4 152477667 152477751 -3152369 + RLTR20D LTR ERVK 484 568 0 7 1748 203 194 0 0 chr4 152477751 152477787 -3152333 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1748 755 276 45 12 chr4 152477787 152478029 -3152091 - B4A SINE B4 -2 290 41 7 1748 443 138 245 0 chr4 152479037 152479131 -3150989 - PB1D9 SINE Alu -2 118 2 7 1748 2730 172 172 6 chr4 152479350 152479982 -3150138 + RMER19A LTR ERVK 1 737 0 7 1748 222 276 7 13 chr4 152480051 152480205 -3149915 + (TG)n Simple_repeat Simple_repeat 2 154 0 7 1748 395 343 7 35 chr4 152480488 152480633 -3149487 - B4A SINE B4 -62 230 90 7 1748 408 239 88 40 chr4 152480643 152480791 -3149329 - B4A SINE B4 -136 156 2 7 1748 24 0 0 0 chr4 152481297 152481321 -3148799 + AT_rich Low_complexity Low_complexity 1 24 0 7 1748 1202 62 7 0 chr4 152481343 152481489 -3148631 + B1_Mus2 SINE Alu 1 147 0 7 1748 199 0 0 61 chr4 152481489 152481522 -3148598 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 7 1748 228 228 0 0 chr4 152481860 152481917 -3148203 + A-rich Low_complexity Low_complexity 4 60 0 8 1748 1710 261 29 32 chr4 152482008 152482534 -3147586 - Lx7 LINE L1 -970 6726 6203 8 1748 603 240 28 158 chr4 152482949 152483196 -3146924 - B3 SINE B2 0 216 2 8 1748 1468 62 10 15 chr4 152483578 152483773 -3146347 - B2_Mm2 SINE B2 -1 194 1 8 1748 228 216 0 0 chr4 152484026 152484077 -3146043 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 8 1748 369 312 43 18 chr4 152486007 152486170 -3143950 + MLT1J LTR MaLR 110 276 -236 8 1748 257 0 30 0 chr4 152486330 152486363 -3143757 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 1748 577 270 13 7 chr4 152486609 152486758 -3143362 - RSINE1 SINE B4 -10 155 6 8 1748 470 317 94 57 chr4 152487208 152487452 -3142668 - L1MEg LINE L1 -5004 1115 863 8 1748 459 0 0 0 chr4 152487452 152487503 -3142617 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1748 850 147 2 4 chr4 152487544 152487677 -3142443 - B1_Mus2 SINE Alu -6 141 14 8 1748 256 310 46 0 chr4 152487741 152487828 -3142292 + MER21B LTR ERV1 628 718 -145 8 1748 190 81 54 0 chr4 152488030 152488067 -3142053 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 8 1748 436 256 198 12 chr4 152488157 152488319 -3141801 - B3A SINE B2 -6 192 1 8 1748 246 309 74 9 chr4 152488322 152488430 -3141690 - PB1D10 SINE Alu -2 115 1 8 1748 325 266 147 39 chr4 152488430 152488499 -3141621 - B4A SINE B4 -206 86 4 8 1748 204 111 0 0 chr4 152489166 152489202 -3140918 + (CCCA)n Simple_repeat Simple_repeat 3 38 0 8 1748 234 246 45 30 chr4 152489532 152489599 -3140521 - L1_Mur1 LINE L1 -6182 800 733 8 1748 228 35 0 0 chr4 152490875 152490904 -3139216 + (TC)n Simple_repeat Simple_repeat 1 29 0 8 1748 477 0 0 0 chr4 152490962 152491015 -3139105 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1748 184 98 38 38 chr4 152491527 152491580 -3138540 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 8 1748 902 95 0 43 chr4 152492767 152492954 -3137166 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 8 1748 336 262 84 90 chr4 152493985 152494140 -3135980 + MTEa LTR MaLR 68 221 -158 8 1748 609 113 31 55 chr4 152494160 152494487 -3135633 + (TCTCTG)n Simple_repeat Simple_repeat 1 318 0 8 1748 374 225 6 0 chr4 152494452 152494630 -3135490 + CT-rich Low_complexity Low_complexity 2 180 0 8 1748 780 311 77 0 chr4 152495184 152495419 -3134701 + B4A SINE B4 16 268 -24 8 1748 228 188 43 72 chr4 152495407 152495476 -3134644 + B3 SINE B2 137 203 -13 8 1748 692 106 40 17 chr4 152495497 152495670 -3134450 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1748 481 145 41 27 chr4 152495711 152495936 -3134184 + (CA)n Simple_repeat Simple_repeat 1 228 0 8 1748 256 207 66 49 chr4 152495959 152496020 -3134100 - ORR1E LTR MaLR 0 419 300 8 1748 361 40 0 0 chr4 152496020 152496070 -3134050 + L1Md_F3 LINE L1 6509 6558 -26 8 1748 429 20 0 0 chr4 152496070 152496120 -3134000 + (TAA)n Simple_repeat Simple_repeat 1 50 0 8 1748 1145 263 71 20 chr4 152496121 152496474 -3133646 - MTD LTR MaLR -44 375 5 8 1748 405 242 104 22 chr4 152496479 152496614 -3133506 + L1MA5 LINE L1 6155 6300 0 8 1748 2836 37 3 0 chr4 152496754 152497080 -3133040 + ORR1A2 LTR MaLR 1 327 0 8 1748 493 322 126 37 chr4 152497525 152497851 -3132269 + ORR1E LTR MaLR 5 359 0 8 1748 276 239 62 97 chr4 152497944 152498088 -3132032 + LTR48B LTR ERV1 1 139 -505 8 1748 339 343 112 26 chr4 152498214 152498519 -3131601 - LTR73 LTR ERV1 -21 551 221 8 1748 436 291 65 38 chr4 152499055 152499145 -3130975 - MLT1C LTR MaLR -56 411 320 8 1748 2419 142 52 12 chr4 152499145 152499550 -3130570 + MTC LTR MaLR 1 421 0 8 1748 436 291 65 38 chr4 152499550 152499645 -3130475 - MLT1C LTR MaLR -148 319 221 8 1748 257 211 40 16 chr4 152499690 152499815 -3130305 + (TATATG)n Simple_repeat Simple_repeat 4 131 0 8 1748 407 149 58 18 chr4 152499793 152499964 -3130156 + (TG)n Simple_repeat Simple_repeat 2 179 0 8 1748 253 188 30 30 chr4 152500002 152500068 -3130052 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1748 248 333 51 0 chr4 152500071 152500149 -3129971 - RSINE1 SINE B4 -2 163 82 2 1748 304 250 90 90 chr4 152500180 152500325 -3129795 - B4A SINE B4 -147 145 1 3 1748 294 285 156 19 chr4 152500337 152500491 -3129629 - MLT1B LTR MaLR -161 229 55 4 1748 253 261 0 0 chr4 152500587 152500656 -3129464 + (CACCT)n Simple_repeat Simple_repeat 5 73 0 5 1748 210 111 44 0 chr4 152500847 152500892 -3129228 + T-rich Low_complexity Low_complexity 2 48 0 6 1748 499 326 31 83 chr4 152501356 152501644 -3128476 - B4A SINE B4 -19 273 1 7 1748 423 330 57 6 chr4 152502024 152502201 -3127919 - ORR1E LTR MaLR -117 242 57 8 1748 429 243 20 34 chr4 152502198 152502343 -3127777 - ORR1E LTR MaLR -227 143 1 9 1748 300 282 35 43 chr4 152502955 152503070 -3127050 - LTR37A LTR ERV1 0 426 313 1 1748 3542 23 8 0 chr4 152504270 152504667 -3125453 - MTB LTR MaLR 0 400 1 1 1748 487 275 7 37 chr4 152504809 152504945 -3125175 + RSINE1 SINE B4 2 133 -32 1 1748 396 0 0 0 chr4 152504947 152504991 -3125129 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1748 270 0 0 0 chr4 152504991 152505020 -3125100 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1748 561 239 266 39 chr4 152505026 152505414 -3124706 + Lx8 LINE L1 6998 7473 0 1 1748 808 337 107 26 chr4 152505418 152505650 -3124470 + MER34A1 LTR ERV1 94 343 -244 1 1748 2145 136 68 5 chr4 152505650 152506019 -3124101 - ORR1B1 LTR MaLR 0 394 3 1 1748 808 337 107 26 chr4 152506019 152506243 -3123877 + MER34A1 LTR ERV1 344 586 -1 1 1748 315 215 74 16 chr4 152506412 152506543 -3123577 - MTEb LTR MaLR -2 417 262 1 1748 496 134 45 39 chr4 152506681 152506859 -3123261 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1748 507 33 0 0 chr4 152507076 152507137 -3122983 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1748 235 362 14 0 chr4 152507227 152507368 -3122752 - L1M4b LINE L1 -409 6624 6482 2 1748 618 370 63 0 chr4 152507408 152507678 -3122442 + MER82 DNA MER2_type 40 326 -327 2 1748 321 345 89 6 chr4 152507774 152507943 -3122177 + L1M5 LINE L1 3547 3729 -2417 2 1748 24 0 0 0 chr4 152507965 152507989 -3122131 + GC_rich Low_complexity Low_complexity 1 24 0 2 1748 286 217 5 49 chr4 152508236 152508428 -3121692 + (GGGTG)n Simple_repeat Simple_repeat 1 183 0 2 1748 325 294 19 110 chr4 152508526 152508790 -3121330 - L1MD LINE L1 -3634 2512 2273 2 1748 562 250 7 0 chr4 152508806 152508946 -3121174 - L1MB7 LINE L1 -8 6176 6036 2 1748 621 280 22 23 chr4 152509390 152509582 -3120538 - B3A SINE B2 -6 210 27 2 1748 918 229 87 54 chr4 152509582 152509859 -3120261 + MTD LTR MaLR 3 288 -131 2 1748 436 322 128 60 chr4 152510934 152511152 -3118968 - B4A SINE B4 -58 234 2 3 1748 393 337 75 60 chr4 152511152 152511420 -3118700 - L1M4b LINE L1 -1323 5683 5412 2 1748 728 288 26 38 chr4 152511894 152512234 -3117886 - L1M4b LINE L1 -1637 5369 5034 2 1748 514 227 30 15 chr4 152512238 152512548 -3117572 + CT-rich Low_complexity Low_complexity 1 314 0 3 1748 307 87 0 80 chr4 152512644 152512694 -3117426 + ORR1A4 LTR MaLR 3 48 -281 3 1748 2545 127 2 60 chr4 152512698 152513167 -3116953 - L1_Mur2 LINE L1 -1197 4680 4239 3 1748 248 306 45 9 chr4 152513173 152513285 -3116835 - L1M4b LINE L1 -2191 4815 4700 2 1748 268 250 13 32 chr4 152513372 152513529 -3116591 + CT-rich Low_complexity Low_complexity 1 154 0 3 1748 239 265 15 0 chr4 152513564 152513632 -3116488 - ID4 SINE ID -13 70 2 3 1748 537 265 60 129 chr4 152513662 152514082 -3116038 - L1M4b LINE L1 -3349 3657 3267 2 1748 228 179 0 18 chr4 152515077 152515134 -3114986 - L1M4b LINE L1 -4125 3209 3154 2 1748 393 314 112 13 chr4 152515423 152515655 -3114465 - Lx8 LINE L1 -261 7212 6958 3 1748 539 254 67 63 chr4 152515863 152516132 -3113988 - L1M4b LINE L1 -4516 2818 2549 2 1748 305 353 50 19 chr4 152516147 152516306 -3113814 - L1M4b LINE L1 -4868 2466 2303 2 1748 216 0 0 0 chr4 152516438 152516462 -3113658 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 1748 487 185 62 18 chr4 152516475 152516674 -3113446 + ORR1D1 LTR MaLR 62 373 -1 3 1748 557 320 44 76 chr4 152516915 152517321 -3112799 - Lx9 LINE L1 -268 7376 6984 3 1748 256 310 38 19 chr4 152517519 152517677 -3112443 - L1M5 LINE L1 -2962 3184 3024 4 1748 704 302 39 72 chr4 152518369 152518704 -3111416 + MTEa LTR MaLR 1 324 -55 4 1748 441 13 77 0 chr4 152518704 152518782 -3111338 + (TCCC)n Simple_repeat Simple_repeat 4 87 0 4 1748 234 0 0 0 chr4 152519303 152519329 -3110791 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1748 1012 125 6 56 chr4 152520073 152520251 -3109869 + ORR1A2 LTR MaLR 159 327 0 4 1748 519 17 0 0 chr4 152520793 152520853 -3109267 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1748 478 254 44 0 chr4 152520857 152520971 -3109149 - B4 SINE B4 -20 272 154 4 1748 800 170 83 18 chr4 152520947 152521115 -3109005 + MTD LTR MaLR 120 298 -121 4 1748 2676 65 0 0 chr4 152521126 152521463 -3108657 - IAPLTR4 LTR ERVK -8 337 1 4 1748 273 319 0 0 chr4 152521471 152521543 -3108577 + MTD LTR MaLR 277 348 -11 4 1748 1200 48 0 20 chr4 152522015 152522165 -3107955 + B1_Mus2 SINE Alu 1 147 0 4 1748 414 282 34 117 chr4 152523246 152523311 -3106809 + B4A SINE B4 24 68 -224 5 1748 216 0 0 0 chr4 152523311 152523335 -3106785 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1748 414 282 34 117 chr4 152523335 152523474 -3106646 + B4A SINE B4 69 211 -81 5 1748 1093 82 64 99 chr4 152523604 152523806 -3106314 + B2_Mm2 SINE B2 1 195 0 5 1748 331 192 46 17 chr4 152523878 152524053 -3106067 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1748 688 140 5 48 chr4 152524096 152524284 -3105836 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1748 285 29 0 0 chr4 152524285 152524319 -3105801 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1748 269 189 40 26 chr4 152524326 152524402 -3105718 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1748 327 170 66 6 chr4 152524414 152524497 -3105623 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1748 3595 145 203 74 chr4 152524497 152525296 -3104824 - RMER19B LTR ERVK 0 902 1 5 1748 327 170 66 6 chr4 152525296 152525378 -3104742 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1748 565 140 33 20 chr4 152525450 152525603 -3104517 + (CA)n Simple_repeat Simple_repeat 1 155 0 5 1748 405 0 0 0 chr4 152526408 152526453 -3103667 + (TAA)n Simple_repeat Simple_repeat 3 47 0 5 1748 2005 160 80 10 chr4 152526545 152526931 -3103189 + MTC LTR MaLR 1 413 -8 6 1748 915 188 55 20 chr4 152526939 152527140 -3102980 + MTC-int LTR MaLR 1 208 -1050 6 1748 1406 21 24 4 chr4 152527149 152527349 -3102771 + (TTAGGG)n Simple_repeat Simple_repeat 1 204 0 6 1748 1374 52 0 15 chr4 152527349 152527623 -3102497 + (CTAGGG)n Simple_repeat Simple_repeat 1 269 0 6 1748 386 171 31 31 chr4 152527623 152527723 -3102397 + (TTAGGG)n Simple_repeat Simple_repeat 5 108 0 6 1748 214 220 28 0 chr4 152527751 152527860 -3102260 + (TTAGGG)n Simple_repeat Simple_repeat 2 113 0 6 1748 4173 186 138 30 chr4 152527862 152528718 -3101402 + MTC-int LTR MaLR 206 1094 -164 6 1748 1115 77 28 0 chr4 152528718 152528861 -3101259 - B1_Mus1 SINE Alu 0 148 2 6 1748 4173 181 135 29 chr4 152528861 152529005 -3101115 + MTC-int LTR MaLR 1095 1256 -2 6 1748 1843 206 60 10 chr4 152529011 152529408 -3100712 + MTC LTR MaLR 5 421 0 6 1748 4569 162 184 15 chr4 152529695 152530510 -3099610 + RMER12 LTR ERVK 1 888 -434 6 1748 276 30 0 0 chr4 152530510 152530543 -3099577 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1748 4569 166 156 28 chr4 152530543 152530784 -3099336 + RMER12 LTR ERVK 889 1322 0 6 1748 273 276 102 0 chr4 152530954 152531052 -3099068 + MER21B LTR ERV1 645 752 -111 6 1748 330 26 0 0 chr4 152531193 152531232 -3098888 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 6 1748 653 230 181 0 chr4 152531333 152531537 -3098583 + B4A SINE B4 2 242 -50 6 1748 206 282 9 52 chr4 152531821 152531937 -3098183 + (CATG)n Simple_repeat Simple_repeat 4 114 0 7 1748 288 328 0 48 chr4 152531898 152532087 -3098033 + (CACG)n Simple_repeat Simple_repeat 1 180 0 7 1748 340 315 2 44 chr4 152531999 152532448 -3097672 + (CATG)n Simple_repeat Simple_repeat 1 430 0 7 1748 907 240 174 16 chr4 152532480 152532802 -3097318 + MTD LTR MaLR 46 418 -1 7 1748 693 0 0 0 chr4 152532977 152533054 -3097066 + (TCTCC)n Simple_repeat Simple_repeat 2 78 0 7 1748 1951 194 43 43 chr4 152533634 152534055 -3096065 + MTC LTR MaLR 1 421 0 7 1748 837 245 28 19 chr4 152534295 152534507 -3095613 + B3 SINE B2 1 214 -2 7 1748 362 253 44 0 chr4 152534559 152534650 -3095470 + MTE2a LTR MaLR 3 97 -282 7 1748 341 264 57 11 chr4 152534818 152534906 -3095214 + L1MD LINE L1 3083 3174 -2972 7 1748 306 0 0 0 chr4 152534915 152534949 -3095171 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1748 835 208 163 0 chr4 152535002 152535180 -3094940 - B3 SINE B2 -8 208 2 8 1748 468 91 0 0 chr4 152535364 152535430 -3094690 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1748 872 236 36 162 chr4 152536246 152536586 -3093534 - MTE2a LTR MaLR -47 332 39 8 1748 609 14 0 0 chr4 152536586 152536656 -3093464 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1748 872 236 36 162 chr4 152536656 152536674 -3093446 - MTE2a LTR MaLR -341 38 19 8 1748 327 278 194 63 chr4 152536843 152537100 -3093020 + L1MEc LINE L1 1928 2264 -4823 8 1748 1183 28 42 7 chr4 152537100 152537243 -3092877 + B1_Mus1 SINE Alu 1 148 0 8 1748 312 278 194 63 chr4 152537243 152537269 -3092851 + L1MEc LINE L1 2223 2248 -5086 8 1748 766 257 54 11 chr4 152537282 152537467 -3092653 + B3A SINE B2 6 198 0 8 1748 27 0 0 0 chr4 152537688 152537715 -3092405 + AT_rich Low_complexity Low_complexity 1 27 0 8 1748 1066 226 5 0 chr4 152537734 152537924 -3092196 - B3 SINE B2 -24 192 2 8 1748 722 218 17 11 chr4 152538046 152538222 -3091898 - Lx5 LINE L1 0 7050 6874 8 1748 966 239 173 29 chr4 152538482 152538788 -3091332 - MTEa LTR MaLR -29 350 1 9 1748 735 255 25 0 chr4 152539082 152539243 -3090877 - B3A SINE B2 -32 166 2 9 1748 333 281 70 107 chr4 152539698 152539885 -3090235 + Lx8 LINE L1 7175 7354 -119 9 1748 724 134 15 0 chr4 152540519 152540653 -3089467 + (TC)n Simple_repeat Simple_repeat 1 136 0 9 1748 857 266 18 0 chr4 152540661 152540879 -3089241 + ORR1D2 LTR MaLR 149 370 0 9 1748 307 346 79 42 chr4 152541099 152541313 -3088807 + L1MC LINE L1 5394 5615 -625 9 1748 336 321 139 35 chr4 152541686 152542002 -3088118 + L1M4c LINE L1 956 1304 -5080 9 1748 872 260 126 4 chr4 152543055 152543302 -3086818 + B4A SINE B4 16 292 0 9 1748 365 180 11 0 chr4 152543302 152543391 -3086729 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 1748 222 37 0 0 chr4 152543391 152543418 -3086702 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1748 1205 56 0 0 chr4 152543418 152543561 -3086559 - B1_Mm SINE Alu 0 147 5 1 1748 455 203 15 8 chr4 152543566 152543841 -3086279 + (CA)n Simple_repeat Simple_repeat 1 277 0 1 1748 251 237 19 6 chr4 152543856 152544013 -3086107 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 1748 801 261 137 39 chr4 152544654 152544989 -3085131 + MTEb LTR MaLR 7 374 -5 1 1748 249 361 56 56 chr4 152545883 152546062 -3084058 + MLT1A0 LTR MaLR 169 347 -18 1 1748 1029 314 11 18 chr4 152546109 152546385 -3083735 + B4 SINE B4 1 274 -18 1 1748 635 55 22 0 chr4 152546387 152546478 -3083642 + (CATA)n Simple_repeat Simple_repeat 1 93 0 1 1748 2485 86 0 38 chr4 152547107 152547447 -3082673 - ORR1A2 LTR MaLR 0 327 1 1 1748 1094 274 29 78 chr4 152547571 152548012 -3082108 - MTE2a LTR MaLR -14 405 1 1 1748 465 160 0 0 chr4 152548036 152548161 -3081959 + CT-rich Low_complexity Low_complexity 6 130 0 1 1748 303 347 71 12 chr4 152548182 152548351 -3081769 - L1M5 LINE L1 -323 5850 5672 1 1748 840 92 0 0 chr4 152548520 152548639 -3081481 + (GAAA)n Simple_repeat Simple_repeat 3 121 0 1 1748 255 244 60 12 chr4 152548792 152548875 -3081245 + MTEa LTR MaLR 293 379 0 1 1748 207 0 0 0 chr4 152550370 152550393 -3079727 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1748 387 56 340 9 chr4 152550525 152550631 -3079489 - B2_Mm2 SINE B2 -8 187 47 1 1748 1256 85 5 38 chr4 152550675 152550859 -3079261 - B2_Mm1t SINE B2 -14 179 2 1 1748 353 231 7 0 chr4 152550881 152551028 -3079092 + (TG)n Simple_repeat Simple_repeat 1 148 0 1 1748 263 333 70 45 chr4 152551032 152551189 -3078931 - RSINE1 SINE B4 -2 163 3 1 1748 228 317 28 73 chr4 152551418 152551527 -3078593 + MIRm SINE MIR 87 190 -86 1 1748 198 0 0 0 chr4 152551567 152551589 -3078531 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1748 304 333 45 0 chr4 152551609 152551720 -3078400 - Tigger5 DNA MER2_type -106 2300 2185 1 1748 329 159 0 81 chr4 152552934 152553183 -3076937 + C-rich Low_complexity Low_complexity 1 228 0 1 1748 507 340 30 46 chr4 152553301 152553382 -3076738 + RMER30 DNA MER1_type 8 90 -112 1 1748 201 39 0 0 chr4 152553382 152553408 -3076712 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1748 507 340 30 46 chr4 152553408 152553523 -3076597 + RMER30 DNA MER1_type 91 201 -1 1 1748 686 339 104 11 chr4 152554711 152554782 -3075338 - B4A SINE B4 0 292 225 1 1748 375 78 0 0 chr4 152554782 152554833 -3075287 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1748 686 339 104 11 chr4 152554833 152555021 -3075099 - B4A SINE B4 -68 224 10 1 1748 315 0 0 0 chr4 152555073 152555108 -3075012 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1748 413 279 40 92 chr4 152555133 152555307 -3074813 - RSINE1 SINE B4 0 165 1 1 1748 267 54 0 0 chr4 152556985 152557022 -3073098 + (CTG)n Simple_repeat Simple_repeat 1 37 0 1 1748 180 0 0 0 chr4 152557044 152557064 -3073056 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 1748 441 0 0 0 chr4 152557993 152558042 -3072078 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1748 518 197 14 14 chr4 152558167 152558311 -3071809 + CT-rich Low_complexity Low_complexity 3 146 0 1 1748 305 364 76 7 chr4 152558326 152558470 -3071650 - HAL1-3A_ME LINE L1 -421 2437 2284 1 1748 324 227 8 16 chr4 152558470 152558591 -3071529 + CT-rich Low_complexity Low_complexity 2 121 0 1 1748 216 0 0 0 chr4 152559748 152559772 -3070348 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1748 1005 61 0 0 chr4 152559774 152559905 -3070215 - B1_Mus1 SINE Alu -11 137 7 1 1748 826 127 8 0 chr4 152559911 152560045 -3070075 + URR1A DNA MER1_type 82 216 -10 1 1748 823 242 85 161 chr4 152560156 152560554 -3069566 - MTEa LTR MaLR -3 376 9 1 1748 579 288 123 18 chr4 152560654 152560987 -3069133 + RLTR9A LTR ERVK 1 368 0 1 1748 671 244 189 26 chr4 152561063 152561290 -3068830 + B4 SINE B4 2 265 -27 1 1748 258 32 0 0 chr4 152561292 152561323 -3068797 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1748 793 82 52 12 chr4 152561325 152561498 -3068622 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1748 1122 36 0 0 chr4 152561549 152561688 -3068432 + (GGGAGA)n Simple_repeat Simple_repeat 4 142 0 1 1748 238 268 206 0 chr4 152562380 152562477 -3067643 + MLT1E1A LTR MaLR 492 608 -72 1 1748 21 71 0 0 chr4 152562867 152562909 -3067211 + GC_rich Low_complexity Low_complexity 1 42 0 1 1748 246 246 132 23 chr4 152563877 152564006 -3066114 + L1M1 LINE L1 5522 5664 -636 1 1748 698 206 0 9 chr4 152564148 152564371 -3065749 + (TATATG)n Simple_repeat Simple_repeat 1 220 0 1 1748 457 249 12 12 chr4 152564344 152564515 -3065605 + (TATG)n Simple_repeat Simple_repeat 2 172 0 1 1748 523 263 43 21 chr4 152564546 152564686 -3065434 + B1F2 SINE Alu 6 148 -1 1 1748 266 231 24 15 chr4 152564686 152564775 -3065345 + L1M3 LINE L1 5807 5900 -268 1 1748 265 274 75 31 chr4 152565085 152565217 -3064903 - B3A SINE B2 -31 185 44 1 1748 756 22 0 0 chr4 152565508 152565598 -3064522 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1748 759 276 57 12 chr4 152566653 152566899 -3063221 - B4A SINE B4 -35 257 1 1 1748 284 324 102 0 chr4 152566904 152567012 -3063108 + ORR1E LTR MaLR 1 119 -240 1 1749 499 269 23 57 chr4 152568273 152568355 -3061765 + MER53 DNA hAT 20 99 -94 1 1749 1957 172 105 8 chr4 152568355 152568737 -3061383 + MTC LTR MaLR 3 421 0 1 1749 499 269 23 57 chr4 152568737 152568831 -3061289 + MER53 DNA hAT 100 190 -3 1 1749 335 307 168 0 chr4 152569128 152569307 -3060813 + ID_B1 SINE B4 5 213 -11 1 1749 1461 279 32 15 chr4 152569307 152569707 -3060413 - MTD LTR MaLR -9 410 4 1 1749 350 91 18 0 chr4 152569718 152569773 -3060347 + (GGA)n Simple_repeat Simple_repeat 3 58 0 1 1749 1104 89 0 0 chr4 152569773 152569953 -3060167 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1749 1549 178 52 78 chr4 152570179 152570563 -3059557 - ORR1D1 LTR MaLR 0 374 1 1 1749 712 258 90 9 chr4 152570807 152571030 -3059090 - ORR1E LTR MaLR -118 241 1 1 1749 338 329 65 19 chr4 152571184 152571370 -3058750 + L1MEg LINE L1 896 1098 -5021 1 1749 276 355 0 51 chr4 152571392 152571436 -3058684 + (CATA)n Simple_repeat Simple_repeat 1 42 0 1 1749 192 125 0 0 chr4 152571436 152571468 -3058652 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1749 606 294 0 0 chr4 152571468 152571765 -3058355 + (CA)n Simple_repeat Simple_repeat 1 297 0 1 1749 182 233 0 16 chr4 152571789 152571850 -3058270 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1749 339 272 19 0 chr4 152571874 152572032 -3058088 + (CA)n Simple_repeat Simple_repeat 2 162 0 1 1749 274 306 87 20 chr4 152572143 152572293 -3057827 + L1MA5 LINE L1 6133 6292 -8 1 1749 22 35 0 0 chr4 152572295 152572324 -3057796 + AT_rich Low_complexity Low_complexity 1 29 0 1 1749 398 220 297 0 chr4 152572324 152572345 -3057775 - B3 SINE B2 -13 203 183 1 1749 351 0 0 0 chr4 152572345 152572384 -3057736 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 1749 398 220 297 0 chr4 152572384 152572480 -3057640 - B3 SINE B2 -34 182 52 1 1749 510 60 36 0 chr4 152572509 152572592 -3057528 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1749 491 246 112 0 chr4 152572594 152572728 -3057392 - B3 SINE B2 -67 149 1 1 1749 198 71 0 0 chr4 152573093 152573121 -3056999 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1749 889 230 189 38 chr4 152573392 152573731 -3056389 - MTD LTR MaLR -14 405 16 1 1749 444 234 18 18 chr4 152573839 152574009 -3056111 + GA-rich Low_complexity Low_complexity 2 171 0 1 1749 768 137 17 33 chr4 152573968 152574012 -3056108 + polypurine Low_complexity Low_complexity 2 43 0 1 1749 1331 51 11 0 chr4 152574012 152574187 -3055933 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 1749 768 137 17 33 chr4 152574187 152574323 -3055797 + polypurine Low_complexity Low_complexity 44 178 0 1 1749 558 271 124 15 chr4 152574889 152575091 -3055029 - MTEa LTR MaLR -15 364 141 1 1749 369 290 29 51 chr4 152575967 152576105 -3054015 + L1ME3B LINE L1 5083 5217 -929 1 1749 326 306 46 0 chr4 152576349 152576457 -3053663 + L1ME3B LINE L1 5342 5454 -786 1 1749 315 351 61 24 chr4 152576583 152576796 -3053324 + L1ME3B LINE L1 5834 6054 -186 1 1749 463 229 8 44 chr4 152577573 152577985 -3052135 + GA-rich Low_complexity Low_complexity 1 396 0 1 1749 474 168 24 55 chr4 152578015 152578546 -3051574 + GA-rich Low_complexity Low_complexity 1 514 0 1 1749 254 298 72 72 chr4 152579570 152579665 -3050455 - B2_Mm2 SINE B2 0 195 1 1 1749 427 245 0 20 chr4 152579665 152579765 -3050355 - RSINE1 SINE B4 -65 100 3 1 1749 393 275 225 59 chr4 152580155 152580391 -3049729 - B4A SINE B4 -16 276 2 1 1749 194 167 0 87 chr4 152580454 152580500 -3049620 - MIRm SINE MIR -114 162 121 1 1749 668 263 48 53 chr4 152582289 152582498 -3047622 - B3 SINE B2 0 216 9 1 1749 3204 30 13 2 chr4 152583881 152584277 -3045843 + MTB LTR MaLR 1 400 0 1 1749 1437 228 67 26 chr4 152584643 152585030 -3045090 - MTD LTR MaLR -16 403 1 1 1749 361 291 217 6 chr4 152585037 152585217 -3044903 - ORR1D2 LTR MaLR -30 340 114 1 1749 1569 229 52 19 chr4 152585200 152585664 -3044456 + RLTR20A LTR ERVK 63 541 0 1 1749 293 232 98 0 chr4 152585664 152585703 -3044417 - ORR1D2 LTR MaLR -287 72 33 1 1749 183 42 0 0 chr4 152585703 152585727 -3044393 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 1749 293 232 98 0 chr4 152585727 152585750 -3044370 - ORR1D2 LTR MaLR -327 32 3 1 1749 392 241 42 20 chr4 152585786 152585912 -3044208 - ORR1D2 LTR MaLR -3 367 240 1 1749 189 210 0 0 chr4 152585916 152585978 -3044142 + G-rich Low_complexity Low_complexity 1 62 0 1 1749 684 257 131 0 chr4 152585993 152586199 -3043921 - ORR1D2 LTR MaLR -137 233 1 1 1749 455 252 5 22 chr4 152587465 152587892 -3042228 + (TG)n Simple_repeat Simple_repeat 1 419 0 1 1749 1662 244 30 0 chr4 152588012 152588406 -3041714 - MTD LTR MaLR 0 419 14 1 1749 303 252 8 51 chr4 152588426 152588543 -3041577 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1749 303 282 116 93 chr4 152588558 152588773 -3041347 + B4A SINE B4 57 276 -16 1 1749 587 229 0 11 chr4 152588803 152588984 -3041136 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1749 440 176 179 32 chr4 152589130 152589212 -3040908 - RLTR20D LTR ERVK 0 578 481 1 1749 270 0 0 0 chr4 152589212 152589242 -3040878 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1749 440 176 179 32 chr4 152589242 152589282 -3040838 - RLTR20D LTR ERVK -98 480 439 1 1749 616 271 143 16 chr4 152589288 152589539 -3040581 - RLTR20D LTR ERVK -285 283 1 1 1749 3051 45 10 2 chr4 152589606 152590003 -3040117 - MTB LTR MaLR 0 400 1 1 1749 505 76 25 0 chr4 152590303 152590382 -3039738 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 1 1749 585 273 191 28 chr4 152591038 152591358 -3038762 + Lx8 LINE L1 7091 7462 -11 2 1749 206 338 0 13 chr4 152591446 152591524 -3038596 + C-rich Low_complexity Low_complexity 2 78 0 2 1749 354 266 21 0 chr4 152592635 152592729 -3037391 - MTEa LTR MaLR -266 113 18 2 1749 1890 172 48 79 chr4 152592929 152593346 -3036774 + MTC LTR MaLR 18 421 0 2 1749 738 233 88 15 chr4 152594538 152594743 -3035377 + ID_B1 SINE B4 2 221 -3 2 1749 515 185 22 28 chr4 152594891 152595069 -3035051 + C-rich Low_complexity Low_complexity 4 180 0 2 1749 395 103 0 17 chr4 152595072 152595131 -3034989 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 2 1749 3671 127 35 10 chr4 152595131 152595726 -3034394 - RMER1A Other Other 0 1030 421 2 1749 2473 241 82 51 chr4 152597494 152598033 -3032087 + RCHARR1 DNA MER1_type 150 719 -255 2 1749 673 248 77 5 chr4 152598033 152598228 -3031892 + B3 SINE B2 3 211 -5 2 1749 2473 241 82 51 chr4 152598228 152598488 -3031632 + RCHARR1 DNA MER1_type 720 974 0 2 1749 3452 33 2 0 chr4 152601400 152601821 -3028299 + L1Md_T LINE L1 6161 6582 0 2 1749 361 275 132 20 chr4 152601956 152602108 -3028012 + MTD LTR MaLR 251 419 0 2 1749 557 218 28 45 chr4 152602116 152602294 -3027826 + MTD-int LTR MaLR 9 183 -1075 2 1749 506 337 67 19 chr4 152602279 152602548 -3027572 - MT2A LTR ERVL -246 287 6 2 1749 413 278 195 10 chr4 152602568 152602846 -3027274 + MTE2b LTR MaLR 2 379 0 2 1749 225 171 0 24 chr4 152603083 152603125 -3026995 + L1M2a1 LINE L1 393 433 -6683 2 1749 319 217 10 61 chr4 152603514 152603612 -3026508 - PB1D10 SINE Alu -23 94 2 2 1749 324 0 0 0 chr4 152604071 152604107 -3026013 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1749 343 219 188 38 chr4 152604109 152604242 -3025878 - ORR1D1 LTR MaLR -53 321 169 2 1749 840 0 50 0 chr4 152604568 152604688 -3025432 + (GA)n Simple_repeat Simple_repeat 2 127 0 2 1749 1301 236 75 24 chr4 152605433 152605767 -3024353 + MTE2b LTR MaLR 18 368 -11 2 1749 229 236 18 0 chr4 152605962 152606017 -3024103 + CT-rich Low_complexity Low_complexity 2 57 0 2 1749 2191 180 221 32 chr4 152606725 152607345 -3022775 - RMER19A LTR ERVK 0 737 1 2 1749 367 234 13 0 chr4 152607377 152607454 -3022666 - ID4_ SINE ID -4 79 2 2 1749 1171 241 60 71 chr4 152607520 152607701 -3022419 - MTD LTR MaLR 0 419 225 2 1749 671 0 13 0 chr4 152607701 152607780 -3022340 + (TTCTC)n Simple_repeat Simple_repeat 4 83 0 2 1749 1171 241 60 71 chr4 152607780 152607797 -3022323 - MTD LTR MaLR -195 224 209 2 1749 1081 135 48 11 chr4 152607797 152607984 -3022136 - B2_Mm2 SINE B2 0 195 2 2 1749 1171 241 60 71 chr4 152607984 152608204 -3021916 - MTD LTR MaLR -211 208 5 2 1749 246 200 68 41 chr4 152608450 152608523 -3021597 - MTEb LTR MaLR 0 379 305 2 1749 710 232 16 58 chr4 152608527 152608715 -3021405 - B3 SINE B2 -27 189 10 2 1749 615 292 207 26 chr4 152608723 152608994 -3021126 - MTEb LTR MaLR -57 322 3 2 1749 510 17 0 0 chr4 152609018 152609077 -3021043 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1749 246 32 0 0 chr4 152609110 152609141 -3020979 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1749 327 115 0 0 chr4 152609142 152609194 -3020926 + HAL1-3A_ME LINE L1 1976 2027 -831 2 1749 214 184 20 0 chr4 152610104 152610153 -3019967 + GA-rich Low_complexity Low_complexity 2 51 0 2 1749 288 53 0 0 chr4 152610195 152610233 -3019887 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1749 223 279 0 35 chr4 152610234 152610349 -3019771 + GA-rich Low_complexity Low_complexity 1 111 0 2 1749 237 253 27 0 chr4 152610235 152610310 -3019810 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 2 1749 263 106 43 0 chr4 152612424 152612471 -3017649 + (AGGGGG)n Simple_repeat Simple_repeat 6 54 0 2 1749 980 258 65 15 chr4 152612471 152612731 -3017389 - ORR1E LTR MaLR -86 273 1 2 1749 278 231 38 13 chr4 152612773 152612852 -3017268 - MLT1A1 LTR MaLR -307 101 21 2 1749 764 324 59 0 chr4 152614288 152614526 -3015594 + B4A SINE B4 5 256 -36 2 1749 423 0 0 0 chr4 152614542 152614589 -3015531 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1749 234 0 0 0 chr4 152614589 152614614 -3015506 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1749 330 262 0 0 chr4 152614689 152614811 -3015309 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 1749 870 241 85 4 chr4 152615371 152615617 -3014503 - MTD LTR MaLR 0 419 154 2 1749 243 0 0 0 chr4 152615813 152615840 -3014280 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2 1749 418 211 120 38 chr4 152615939 152616072 -3014048 - MTD LTR MaLR -275 144 1 2 1749 893 265 42 114 chr4 152616027 152616432 -3013688 + MTE2b LTR MaLR 4 379 0 2 1749 204 40 0 0 chr4 152616805 152616830 -3013290 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2 1749 23 0 0 0 chr4 152616830 152616853 -3013267 + AT_rich Low_complexity Low_complexity 1 23 0 2 1749 410 322 44 93 chr4 152617078 152617486 -3012634 - L1M5 LINE L1 -3527 2619 2232 2 1749 274 238 183 65 chr4 152617914 152618067 -3012053 - Lx8 LINE L1 -292 7181 7011 2 1749 2092 312 80 26 chr4 152618209 152619137 -3010983 - Lx8 LINE L1 -3 7470 6493 2 1749 1072 281 61 39 chr4 152620799 152620847 -3009273 + MTE2a LTR MaLR 3 49 -330 2 1749 207 0 0 0 chr4 152620847 152620870 -3009250 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 2 1749 1072 281 61 39 chr4 152620870 152621025 -3009095 + MTE2a LTR MaLR 50 203 -176 2 1749 195 42 0 0 chr4 152621025 152621049 -3009071 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1749 1072 281 61 39 chr4 152621049 152621207 -3008913 + MTE2a LTR MaLR 204 373 -6 2 1749 739 285 4 26 chr4 152622544 152622771 -3007349 + ID_B1 SINE B4 1 222 -2 2 1749 482 295 28 46 chr4 152624076 152624293 -3005827 + RMER15 LTR ERVL 350 562 -13 2 1749 510 17 0 0 chr4 152626357 152626416 -3003704 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1749 252 86 0 0 chr4 152626693 152626728 -3003392 + (CTG)n Simple_repeat Simple_repeat 1 35 0 2 1749 447 288 63 0 chr4 152626728 152626839 -3003281 - RSINE1 SINE B4 -2 163 46 2 1749 987 218 184 25 chr4 152626843 152627158 -3002962 - ORR1D2 LTR MaLR -5 365 1 2 1749 1865 68 148 7 chr4 152630039 152630322 -2999798 - ORR1A2 LTR MaLR -4 323 1 2 1749 346 395 36 36 chr4 152630396 152630732 -2999388 + MTE-int LTR MaLR 111 446 -1134 2 1749 609 257 149 5 chr4 152630998 152631186 -2998934 + ID_B1 SINE B4 1 215 -9 2 1749 322 360 29 7 chr4 152633019 152633159 -2996961 + MLT2D LTR ERVL 18 160 -254 2 1749 1267 236 96 16 chr4 152633213 152633536 -2996584 - ORR1D2 LTR MaLR -13 357 9 2 1749 276 317 74 53 chr4 152633518 152633708 -2996412 + MLT2D LTR ERVL 157 350 -47 2 1749 750 202 0 0 chr4 152634007 152634180 -2995940 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1749 536 241 98 72 chr4 152634220 152634484 -2995636 - B4 SINE B4 -17 275 5 2 1749 198 0 0 0 chr4 152634621 152634643 -2995477 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1749 745 288 34 119 chr4 152634658 152635044 -2995076 + MTC LTR MaLR 64 416 -5 2 1749 522 0 0 0 chr4 152636176 152636234 -2993886 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1749 391 84 42 14 chr4 152641080 152641152 -2988968 + (GGGGA)n Simple_repeat Simple_repeat 3 76 0 2 1749 378 279 0 0 chr4 152641241 152641388 -2988732 + (CA)n Simple_repeat Simple_repeat 1 147 0 2 1749 386 263 60 8 chr4 152641391 152641487 -2988633 + HAL1-3A_ME LINE L1 1979 2081 -777 2 1749 759 72 0 0 chr4 152641487 152641598 -2988522 + (GGGAGA)n Simple_repeat Simple_repeat 3 113 0 2 1749 386 263 60 8 chr4 152641598 152641635 -2988485 + HAL1-3A_ME LINE L1 2082 2119 -739 2 1749 414 292 0 0 chr4 152642355 152642633 -2987487 + (TG)n Simple_repeat Simple_repeat 1 278 0 2 1749 561 291 86 60 chr4 152642658 152642925 -2987195 - B4 SINE B4 -18 274 1 2 1749 342 0 0 0 chr4 152644235 152644273 -2985847 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1749 351 0 0 0 chr4 152646301 152646340 -2983780 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1749 365 316 101 0 chr4 152646884 152647023 -2983097 + RSINE1 SINE B4 5 157 -8 2 1749 756 156 0 0 chr4 152647024 152647204 -2982916 + GA-rich Low_complexity Low_complexity 1 180 0 2 1749 267 54 0 0 chr4 152647233 152647270 -2982850 + (CAGAGA)n Simple_repeat Simple_repeat 2 38 0 2 1749 252 152 45 0 chr4 152647480 152647546 -2982574 + GA-rich Low_complexity Low_complexity 4 72 0 2 1749 226 299 128 81 chr4 152647579 152647728 -2982392 - MTEb LTR MaLR -198 181 26 2 1749 317 244 24 0 chr4 152647653 152647735 -2982385 - MLT2B3 LTR ERVL -453 101 18 2 1749 270 322 73 16 chr4 152647912 152648035 -2982085 + MLT2B2 LTR ERVL 359 488 -74 2 1749 563 230 127 0 chr4 152648212 152648377 -2981743 + MLT1B LTR MaLR 1 186 -204 2 1749 509 257 35 7 chr4 152648379 152648524 -2981596 + B4 SINE B4 2 150 -142 2 1749 289 289 23 62 chr4 152648539 152648668 -2981452 - RMER10B LTR ERVL -37 361 238 2 1749 215 289 0 0 chr4 152649027 152649072 -2981048 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1749 1067 214 166 47 chr4 152649737 152649784 -2980336 - MTD LTR MaLR -14 405 363 2 1749 855 227 55 5 chr4 152649784 152649983 -2980137 + B3 SINE B2 3 211 -5 2 1749 1067 214 166 47 chr4 152649983 152650297 -2979823 - MTD LTR MaLR -57 362 1 2 1749 1201 258 104 6 chr4 152650490 152650826 -2979294 - MTEa LTR MaLR -8 371 3 2 1749 344 303 31 189 chr4 152651202 152651430 -2978690 + ID_B1 SINE B4 27 218 -6 2 1749 973 177 6 10 chr4 152651430 152651745 -2978375 + GA-rich Low_complexity Low_complexity 1 313 0 2 1749 975 117 5 38 chr4 152651774 152651960 -2978160 + GA-rich Low_complexity Low_complexity 1 180 0 2 1749 206 231 0 0 chr4 152652151 152652190 -2977930 + CT-rich Low_complexity Low_complexity 3 41 0 2 1749 387 0 0 0 chr4 152652707 152652750 -2977370 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 2 1749 294 262 18 36 chr4 152652880 152652991 -2977129 - Lx8 LINE L1 0 7473 7365 2 1749 1769 147 14 57 chr4 152654391 152654760 -2975360 + ORR1B1 LTR MaLR 41 393 -1 2 1749 204 135 0 0 chr4 152655745 152655782 -2974338 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1749 342 0 0 0 chr4 152655832 152655870 -2974250 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1749 957 272 154 22 chr4 152655912 152656276 -2973844 + MTD LTR MaLR 1 412 -7 2 1749 329 237 51 34 chr4 152657091 152657209 -2972911 + MTEb LTR MaLR 258 377 -2 2 1749 2372 219 34 79 chr4 152657212 152657831 -2972289 - RMER19C LTR ERVK -20 591 1 2 1749 1073 279 65 0 chr4 152658013 152658335 -2971785 - ORR1E LTR MaLR -12 347 5 3 1749 2278 86 0 0 chr4 152659317 152659631 -2970489 + ORR1A2 LTR MaLR 1 314 -13 3 1749 240 349 12 0 chr4 152660387 152660470 -2969650 - ORR1E LTR MaLR 0 379 296 3 1749 466 246 72 28 chr4 152660520 152660700 -2969420 - ORR1E LTR MaLR -164 195 8 3 1749 229 320 70 54 chr4 152661456 152661585 -2968535 - Tigger9b DNA MER2_type -431 193 63 3 1749 313 125 0 51 chr4 152661740 152661799 -2968321 + HAL1-3A_ME LINE L1 1963 2018 -840 3 1749 276 246 15 0 chr4 152661799 152661864 -2968256 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1749 379 257 0 22 chr4 152661867 152662050 -2968070 + (CATA)n Simple_repeat Simple_repeat 2 180 0 3 1749 490 248 15 0 chr4 152662053 152662186 -2967934 + (CA)n Simple_repeat Simple_repeat 2 136 0 3 1749 231 36 0 0 chr4 152662849 152662877 -2967243 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1749 780 125 22 43 chr4 152663338 152663522 -2966598 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 1749 261 0 0 0 chr4 152663669 152663698 -2966422 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1749 339 250 28 0 chr4 152663702 152663774 -2966346 - B4 SINE B4 0 292 219 3 1749 498 274 34 68 chr4 152663778 152663954 -2966166 - B3A SINE B2 0 198 29 3 1749 239 211 0 0 chr4 152664088 152664140 -2965980 - RSINE1 SINE B4 -32 133 82 3 1749 240 200 25 12 chr4 152664190 152664271 -2965849 + (TATG)n Simple_repeat Simple_repeat 3 84 0 3 1749 394 210 0 0 chr4 152664275 152664356 -2965764 - B4 SINE B4 -211 81 1 3 1749 2957 26 28 18 chr4 152664625 152664646 -2965474 - MTA_Mm LTR MaLR 0 396 382 3 1749 3287 52 36 0 chr4 152664646 152665067 -2965053 - RLTR10C LTR ERVK 0 436 1 3 1749 2957 26 28 18 chr4 152665067 152665437 -2964683 - MTA_Mm LTR MaLR -15 381 1 3 1749 464 297 144 50 chr4 152665896 152666300 -2963820 + MLT1C LTR MaLR 19 460 -7 3 1749 464 265 22 0 chr4 152667377 152667513 -2962607 + ID_B1 SINE B4 2 140 -84 3 1749 313 204 35 0 chr4 152667524 152667666 -2962454 + GA-rich Low_complexity Low_complexity 6 152 0 3 1749 346 255 59 0 chr4 152667666 152667768 -2962352 + (CAGAGA)n Simple_repeat Simple_repeat 1 108 0 3 1749 457 216 10 10 chr4 152667768 152667871 -2962249 + ID_B1 SINE B4 121 223 -1 3 1749 435 224 211 26 chr4 152668075 152668231 -2961889 + ORR1D2 LTR MaLR 1 185 -185 3 1749 442 293 92 86 chr4 152668387 152668746 -2961374 + MLT1A LTR MaLR 1 361 -13 3 1749 400 357 36 0 chr4 152669577 152669739 -2960381 + B4A SINE B4 9 176 -116 3 1749 998 177 42 32 chr4 152669739 152669955 -2960165 - URR1A DNA MER1_type 0 226 9 3 1749 556 215 9 0 chr4 152669928 152670035 -2960085 + B4A SINE B4 173 280 -12 3 1749 220 313 0 24 chr4 152670048 152670133 -2959987 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 3 1749 202 311 0 0 chr4 152670446 152670507 -2959613 + C-rich Low_complexity Low_complexity 4 64 0 3 1749 509 244 0 6 chr4 152671300 152671477 -2958643 + (TATG)n Simple_repeat Simple_repeat 2 177 0 3 1749 666 175 17 6 chr4 152671522 152671694 -2958426 + (TATG)n Simple_repeat Simple_repeat 2 175 0 3 1749 380 202 0 16 chr4 152671714 152671835 -2958285 + (TATG)n Simple_repeat Simple_repeat 1 119 0 3 1749 1058 209 121 41 chr4 152672038 152672352 -2957768 + MTEb LTR MaLR 1 339 -40 3 1749 414 194 39 29 chr4 152673308 152673414 -2956706 + PB1D7 SINE Alu 15 115 -5 3 1749 734 309 47 29 chr4 152673965 152674242 -2955878 + MLT1A0 LTR MaLR 84 365 0 3 1749 520 286 111 76 chr4 152675017 152675358 -2954762 + ORR1E LTR MaLR 1 353 -6 3 1749 1383 221 166 36 chr4 152675416 152675886 -2954234 + RMER15 LTR ERVL 27 557 -18 3 1749 321 311 96 41 chr4 152676561 152676779 -2953341 - B4A SINE B4 -62 230 1 3 1749 398 162 25 8 chr4 152677374 152677492 -2952628 + (TG)n Simple_repeat Simple_repeat 2 121 0 3 1749 1846 333 84 35 chr4 152677541 152678688 -2951432 - Lx7 LINE L1 -30 7443 6232 3 1749 309 364 93 0 chr4 152679300 152679418 -2950702 + Lx8 LINE L1 7196 7324 -149 3 1749 338 263 79 79 chr4 152679730 152679957 -2950163 + MLT1B LTR MaLR 66 292 -98 3 1749 547 291 85 26 chr4 152680848 152681120 -2949000 - RMER15 LTR ERVL -1 574 287 3 1749 424 251 152 23 chr4 152681149 152681268 -2948852 - RMER15 LTR ERVL -382 193 65 3 1749 2311 104 0 0 chr4 152681268 152681595 -2948525 + ORR1A2 LTR MaLR 1 327 0 3 1749 424 251 152 23 chr4 152681595 152681646 -2948474 - RMER15 LTR ERVL -511 64 3 3 1749 499 273 51 19 chr4 152682941 152683098 -2947022 - MLT1B LTR MaLR -209 181 20 3 1749 201 94 0 0 chr4 152684772 152684804 -2945316 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1749 441 95 0 0 chr4 152685095 152685158 -2944962 + (GGGGA)n Simple_repeat Simple_repeat 1 63 0 3 1749 459 101 0 0 chr4 152685151 152685230 -2944890 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1749 434 18 0 18 chr4 152685232 152685288 -2944832 + (GGA)n Simple_repeat Simple_repeat 3 57 0 3 1749 249 325 31 31 chr4 152685751 152685881 -2944239 + MIRb SINE MIR 101 230 -38 3 1749 860 201 61 10 chr4 152686993 152687189 -2942931 - MTE2b LTR MaLR -1 378 173 3 1749 291 71 0 0 chr4 152687191 152687233 -2942887 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1749 498 180 28 34 chr4 152687435 152687613 -2942507 + (TATG)n Simple_repeat Simple_repeat 2 178 0 3 1749 423 230 31 5 chr4 152687616 152687848 -2942272 + (TG)n Simple_repeat Simple_repeat 1 238 0 3 1749 520 306 117 33 chr4 152688915 152689249 -2940871 + MER31A LTR ERV1 1 362 -123 3 1749 243 0 0 0 chr4 152689259 152689286 -2940834 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1749 241 302 50 25 chr4 152689903 152690022 -2940098 + RMER15 LTR ERVL 1 122 -453 3 1749 425 310 87 5 chr4 152690185 152690370 -2939750 + RMER15 LTR ERVL 376 575 0 3 1749 265 213 16 0 chr4 152690756 152690817 -2939303 + GA-rich Low_complexity Low_complexity 2 63 0 3 1749 260 318 30 81 chr4 152691758 152691994 -2938126 + RMER12 LTR ERVK 735 958 -364 3 1749 264 186 0 0 chr4 152691998 152692057 -2938063 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1749 824 259 75 92 chr4 152692716 152693107 -2937013 + MTEa LTR MaLR 1 378 -1 3 1749 374 258 168 12 chr4 152693845 152694006 -2936114 - MLT1C LTR MaLR -29 438 253 3 1749 1931 150 0 0 chr4 152694122 152694428 -2935692 - MTC LTR MaLR 0 421 116 3 1749 371 335 134 0 chr4 152694453 152694662 -2935458 - B4 SINE B4 -12 280 44 3 1749 251 325 0 0 chr4 152695568 152695648 -2934472 + (CCA)n Simple_repeat Simple_repeat 3 82 0 3 1749 412 323 90 0 chr4 152696910 152697065 -2933055 + MER70A LTR ERVL 260 428 -44 3 1749 2189 86 29 0 chr4 152697153 152697467 -2932653 - ORR1A2 LTR MaLR 0 327 5 3 1749 2069 83 7 7 chr4 152697471 152697773 -2932347 - ORR1A2-int LTR MaLR 0 1963 1662 3 1749 976 214 93 40 chr4 152698318 152698620 -2931500 + MTD LTR MaLR 1 318 -101 3 1750 192 372 13 0 chr4 152700102 152700180 -2929940 - MIRc SINE MIR -24 244 166 3 1750 375 101 25 12 chr4 152700738 152700818 -2929302 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 3 1750 343 306 27 9 chr4 152702049 152702161 -2927959 + MLT1K LTR MaLR 467 580 -15 3 1750 450 252 25 8 chr4 152702615 152702735 -2927385 - RSINE1 SINE B4 -42 123 2 3 1750 469 239 0 9 chr4 152702745 152702968 -2927152 + (TG)n Simple_repeat Simple_repeat 1 220 0 3 1750 242 370 0 0 chr4 152702899 152702991 -2927129 + (TATG)n Simple_repeat Simple_repeat 4 95 0 3 1750 279 222 0 0 chr4 152703030 152703111 -2927009 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1750 258 322 0 0 chr4 152703136 152703226 -2926894 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1750 302 285 64 117 chr4 152703226 152703397 -2926723 - RSINE1 SINE B4 0 165 4 3 1750 337 320 26 33 chr4 152703446 152703598 -2926522 - RSINE1 SINE B4 -14 151 1 3 1750 697 247 82 6 chr4 152703659 152703842 -2926278 - B3A SINE B2 0 198 2 3 1750 2078 131 98 27 chr4 152705475 152705843 -2924277 + ORR1B1 LTR MaLR 1 394 0 3 1750 636 311 170 31 chr4 152705968 152706382 -2923738 - Lx8 LINE L1 -134 7339 6868 3 1750 296 179 51 13 chr4 152706548 152706627 -2923493 - MLT1C LTR MaLR -349 304 223 3 1750 238 246 0 16 chr4 152707912 152707974 -2922146 - MLT1C LTR MaLR -265 202 142 3 1750 333 266 90 38 chr4 152708007 152708140 -2921980 - MTE2a LTR MaLR 0 419 280 3 1750 1952 150 12 9 chr4 152708157 152708494 -2921626 - ORR1A1 LTR MaLR -8 338 1 3 1750 472 286 43 103 chr4 152708494 152708721 -2921399 - MTE2a LTR MaLR -154 225 13 3 1750 371 278 31 0 chr4 152708727 152708835 -2921285 - MLT1C LTR MaLR -274 116 6 3 1750 336 271 202 45 chr4 152709186 152709364 -2920756 + B3A SINE B2 1 206 -10 3 1750 239 310 40 46 chr4 152709365 152709517 -2920603 - MIRb SINE MIR -62 206 56 3 1750 331 304 45 35 chr4 152710140 152710341 -2919779 + HAL1-2a_MD LINE L1 2303 2505 -519 3 1750 325 296 12 24 chr4 152710442 152710608 -2919512 + (CCA)n Simple_repeat Simple_repeat 3 166 0 3 1750 302 282 66 66 chr4 152710747 152710899 -2919221 + HAL1-2a_MD LINE L1 2353 2504 -520 3 1750 252 310 69 0 chr4 152711608 152711695 -2918425 - MLT1C-int LTR MaLR -806 581 489 3 1750 619 232 174 6 chr4 152712729 152712907 -2917213 - B3 SINE B2 -7 209 2 3 1750 454 307 14 7 chr4 152713022 152713163 -2916957 + RMER5 LTR ERV1 305 446 -88 3 1750 901 265 104 27 chr4 152713479 152713816 -2916304 + MTE2a LTR MaLR 16 378 -1 3 1750 362 175 86 12 chr4 152714678 152714759 -2915361 + RMER5 LTR ERV1 448 534 0 3 1750 779 246 122 11 chr4 152715898 152716161 -2913959 - RMER5 LTR ERV1 0 534 243 3 1750 1931 199 85 2 chr4 152716150 152716548 -2913572 + ORR1D1-int LTR MaLR 939 1369 -1 3 1750 1088 210 51 29 chr4 152716557 152716832 -2913288 + ORR1D1 LTR MaLR 9 289 -85 3 1750 1403 226 15 63 chr4 152716824 152717221 -2912899 - MTC-int LTR MaLR -814 444 67 3 1750 922 191 60 5 chr4 152717247 152717437 -2912683 - MTD LTR MaLR 0 419 219 3 1750 864 218 102 4 chr4 152717437 152717663 -2912457 - ORR1C1 LTR MaLR 0 378 131 3 1750 1738 100 81 14 chr4 152717672 152717778 -2912342 - Lx2 LINE L1 0 6997 6886 3 1750 198 0 0 0 chr4 152717778 152717800 -2912320 + (CCCA)n Simple_repeat Simple_repeat 3 24 0 3 1750 1738 100 81 14 chr4 152717800 152717978 -2912142 - Lx2 LINE L1 -112 6885 6695 3 1750 2575 101 0 3 chr4 152717985 152718353 -2911767 + Lx2 LINE L1 6306 6672 -325 3 1750 518 228 24 0 chr4 152718362 152718485 -2911635 - ORR1C1 LTR MaLR -252 126 1 3 1750 629 332 9 26 chr4 152718488 152718714 -2911406 - MTD LTR MaLR -197 222 1 3 1750 300 309 0 50 chr4 152718895 152718994 -2911126 + L1MC4a LINE L1 6591 6684 -1198 3 1750 572 183 18 14 chr4 152719011 152719234 -2910886 + (TG)n Simple_repeat Simple_repeat 1 224 0 3 1750 699 233 11 53 chr4 152719234 152719424 -2910696 - B3A SINE B2 -16 182 1 3 1750 346 344 69 54 chr4 152719494 152719697 -2910423 - L1MEc LINE L1 -4260 2140 1935 3 1750 351 279 81 0 chr4 152720161 152720272 -2909848 - PB1D7 SINE Alu 0 120 1 3 1750 379 365 97 8 chr4 152720286 152720543 -2909577 - L1MEc LINE L1 -4819 1581 1302 3 1750 1395 134 0 5 chr4 152720824 152721042 -2909078 - URR1B DNA MER1_type -3 222 6 4 1750 371 319 6 12 chr4 152722321 152722549 -2907571 + CT-rich Low_complexity Low_complexity 1 226 0 4 1750 676 173 6 6 chr4 152722685 152722865 -2907255 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1750 609 181 17 0 chr4 152722901 152723078 -2907042 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1750 209 182 18 0 chr4 152723102 152723157 -2906963 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1750 769 153 11 0 chr4 152723183 152723359 -2906761 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1750 355 167 22 0 chr4 152723375 152723465 -2906655 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1750 406 338 238 30 chr4 152723475 152723710 -2906410 - B4A SINE B4 0 292 9 4 1750 302 193 0 54 chr4 152724205 152724298 -2905822 + (CATCC)n Simple_repeat Simple_repeat 5 92 0 4 1750 754 125 11 33 chr4 152724378 152724560 -2905560 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 4 1750 1193 231 171 103 chr4 152724599 152725054 -2905066 - MT2A LTR ERVL -26 467 1 4 1750 396 0 0 0 chr4 152725815 152725859 -2904261 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 4 1750 1068 83 7 0 chr4 152725870 152726015 -2904105 - B1_Mus1 SINE Alu -1 147 2 4 1750 990 84 21 0 chr4 152726559 152726702 -2903418 + B2_Mm2 SINE B2 1 146 -49 4 1750 843 118 13 13 chr4 152726714 152726868 -2903252 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 4 1750 215 286 0 25 chr4 152727076 152727155 -2902965 + G-rich Low_complexity Low_complexity 4 80 0 4 1750 471 321 86 0 chr4 152727308 152727470 -2902650 + Lx8 LINE L1 6445 6620 -853 4 1750 1535 128 36 4 chr4 152727488 152727740 -2902380 - RMER19B LTR ERVK -7 895 636 4 1750 562 232 75 34 chr4 152727756 152727903 -2902217 + RMER13A LTR ERVK 708 860 0 4 1750 1115 198 5 0 chr4 152727905 152728102 -2902018 + ORR1C2 LTR MaLR 185 382 -2 4 1750 231 292 88 0 chr4 152728793 152728906 -2901214 - LTR16D LTR ERVL -16 635 513 4 1750 403 281 20 67 chr4 152729325 152729474 -2900646 - RSINE1 SINE B4 -21 144 3 4 1750 420 316 0 9 chr4 152729638 152729753 -2900367 + RSINE1 SINE B4 16 129 -36 4 1750 738 316 17 8 chr4 152729959 152730198 -2899922 + MT2A LTR ERVL 222 462 -71 4 1750 419 241 35 31 chr4 152731205 152731333 -2898787 + B4A SINE B4 1 127 -38 4 1750 438 129 0 0 chr4 152731437 152731522 -2898598 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1750 453 19 0 0 chr4 152732116 152732170 -2897950 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1750 478 330 107 76 chr4 152732797 152733217 -2896903 + MLT1C LTR MaLR 33 465 -2 4 1750 847 232 103 0 chr4 152733255 152733479 -2896641 - MTEa LTR MaLR -4 375 129 4 1750 1124 250 147 6 chr4 152734152 152734498 -2895622 + MTD LTR MaLR 9 403 -16 4 1750 448 302 14 7 chr4 152734947 152735087 -2895033 - B4A SINE B4 -142 150 10 4 1750 1561 289 75 42 chr4 152735705 152736235 -2893885 + Lx9 LINE L1 6636 7183 -461 4 1750 252 339 0 18 chr4 152736355 152736466 -2893654 + Lx9 LINE L1 7169 7277 -367 4 1750 266 327 0 73 chr4 152736652 152736761 -2893359 + PB1D10 SINE Alu 5 105 -12 4 1750 474 262 102 23 chr4 152737273 152737449 -2892671 + B4A SINE B4 8 197 -95 4 1750 230 282 14 27 chr4 152737478 152737551 -2892569 + Lx9 LINE L1 7090 7161 -483 4 1750 771 285 99 15 chr4 152737616 152737958 -2892162 + Lx9 LINE L1 7266 7636 -8 4 1750 1085 58 0 0 chr4 152738888 152739025 -2891095 + B1_Mus2 SINE Alu 2 138 -9 4 1750 290 45 23 0 chr4 152739026 152739070 -2891050 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 4 1750 198 103 0 0 chr4 152739088 152739117 -2891003 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 4 1750 249 117 33 16 chr4 152739249 152739310 -2890810 + (TATG)n Simple_repeat Simple_repeat 1 62 0 4 1750 408 235 0 0 chr4 152740351 152740466 -2889654 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1750 543 188 0 0 chr4 152741496 152741613 -2888507 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1750 917 168 0 6 chr4 152743198 152743378 -2886742 + CT-rich Low_complexity Low_complexity 1 179 0 4 1750 1137 128 0 0 chr4 152743378 152743558 -2886562 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1750 215 239 15 0 chr4 152744459 152744526 -2885594 + CT-rich Low_complexity Low_complexity 1 68 0 4 1750 195 235 0 0 chr4 152744526 152744577 -2885543 + C-rich Low_complexity Low_complexity 4 54 0 4 1750 598 279 38 5 chr4 152746666 152746850 -2883270 + B3 SINE B2 12 201 -15 4 1750 235 192 0 27 chr4 152746853 152746928 -2883192 + (CATA)n Simple_repeat Simple_repeat 2 74 0 4 1750 248 200 0 32 chr4 152747710 152747772 -2882348 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1750 21 36 0 0 chr4 152747944 152747972 -2882148 + AT_rich Low_complexity Low_complexity 1 28 0 4 1750 1040 254 13 53 chr4 152750717 152751020 -2879100 + B4A SINE B4 2 292 0 4 1750 333 158 0 0 chr4 152751073 152751155 -2878965 + (CAGAGA)n Simple_repeat Simple_repeat 6 87 0 4 1750 228 196 20 0 chr4 152751271 152751322 -2878798 + CT-rich Low_complexity Low_complexity 1 52 0 4 1750 254 336 20 54 chr4 152751323 152751471 -2878649 - B1F SINE Alu -6 143 1 4 1750 491 262 56 14 chr4 152752587 152752730 -2877390 - B4A SINE B4 -1 291 143 4 1750 495 0 0 0 chr4 152752818 152752873 -2877247 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 4 1750 330 272 11 115 chr4 152753321 152753411 -2876709 + RSINE1 SINE B4 2 92 -73 4 1750 438 36 0 0 chr4 152753411 152753467 -2876653 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1750 426 39 0 0 chr4 152753467 152753518 -2876602 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1750 330 272 11 115 chr4 152753518 152753609 -2876511 + RSINE1 SINE B4 93 164 -1 4 1750 223 306 71 0 chr4 152754567 152754665 -2875455 + MIRb SINE MIR 40 144 -124 4 1750 291 292 17 26 chr4 152754828 152754944 -2875176 - PB1D7 SINE Alu -1 119 5 4 1750 554 302 54 21 chr4 152756779 152756965 -2873155 + MTD LTR MaLR 1 192 -227 4 1750 803 284 59 12 chr4 152757315 152757568 -2872552 + MTE2a LTR MaLR 106 370 -9 4 1750 2161 80 42 8 chr4 152757886 152758208 -2871912 + ORR1A2 LTR MaLR 1 379 0 4 1750 570 288 91 5 chr4 152760252 152760451 -2869669 - ID_B1 SINE B4 -4 220 5 4 1750 412 243 33 60 chr4 152762546 152762730 -2867390 - HAL1-2a_MD LINE L1 -516 2508 2330 4 1750 785 246 179 11 chr4 152763538 152763862 -2866258 + MTD LTR MaLR 3 405 -14 4 1750 360 0 0 0 chr4 152763862 152763902 -2866218 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1750 1002 160 2 0 chr4 152764087 152764910 -2865210 + (TCCA)n Simple_repeat Simple_repeat 1 825 0 4 1750 234 150 0 0 chr4 152764922 152764962 -2865158 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 4 1750 689 290 61 11 chr4 152764971 152765233 -2864887 - Lx9 LINE L1 -185 7459 7185 4 1750 316 325 70 0 chr4 152766087 152766201 -2863919 - Cheshire DNA MER1_type -2138 282 161 4 1750 625 301 23 0 chr4 152766754 152766927 -2863193 + B4 SINE B4 12 188 -104 4 1750 315 358 33 41 chr4 152768435 152768680 -2861440 - MLT2B3 LTR ERVL -69 485 243 4 1750 322 365 17 23 chr4 152769125 152769299 -2860821 + MER20 DNA MER1_type 40 212 -7 4 1750 649 231 101 0 chr4 152769658 152769827 -2860293 + ID_B1 SINE B4 1 186 -38 4 1750 493 287 62 43 chr4 152769894 152770105 -2860015 + Lx8 LINE L1 7185 7399 -74 4 1750 377 279 75 75 chr4 152770270 152770456 -2859664 - MER77 LTR ERVL -308 299 114 4 1750 489 123 0 0 chr4 152771003 152771076 -2859044 - URR1B DNA MER1_type -1 224 152 4 1750 619 294 59 39 chr4 152772156 152772442 -2857678 + B4 SINE B4 1 292 0 4 1750 336 312 151 64 chr4 152774112 152774410 -2855710 + MLT1A0 LTR MaLR 2 325 -40 4 1750 215 297 20 71 chr4 152774878 152774976 -2855144 - L2c LINE L2 -6 3381 3289 4 1750 358 239 142 0 chr4 152776318 152776473 -2853647 + MER31A LTR ERV1 8 184 -301 4 1750 533 342 128 10 chr4 152776535 152776833 -2853287 - MER58B DNA MER1_type -8 333 1 4 1750 423 361 8 41 chr4 152776840 152777083 -2853037 + L1MEg LINE L1 540 774 -5310 4 1750 593 224 169 93 chr4 152777844 152778183 -2851937 + MTE2b LTR MaLR 5 337 -42 4 1750 1288 54 4 12 chr4 152778185 152778430 -2851690 + (TCC)n Simple_repeat Simple_repeat 1 242 0 4 1750 234 277 168 11 chr4 152779242 152779337 -2850783 + L2b LINE L2 3253 3362 -13 4 1750 1227 54 0 0 chr4 152780456 152780603 -2849517 + B1_Mm SINE Alu 1 147 0 4 1750 322 307 95 17 chr4 152780606 152780722 -2849398 + RMER12 LTR ERVK 720 844 -478 4 1750 196 230 56 18 chr4 152780829 152780886 -2849234 - MIRc SINE MIR -114 162 101 4 1750 338 236 11 0 chr4 152783747 152783921 -2846199 + (TGAA)n Simple_repeat Simple_repeat 3 178 0 4 1750 561 203 0 0 chr4 152783946 152784123 -2845997 + (TGAA)n Simple_repeat Simple_repeat 4 180 0 4 1750 333 0 0 0 chr4 152784230 152784267 -2845853 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1750 421 325 6 37 chr4 152784625 152784788 -2845332 - RMER15 LTR ERVL -68 507 350 4 1750 509 268 19 25 chr4 152785187 152785344 -2844776 + B3A SINE B2 4 159 -39 4 1750 414 0 0 0 chr4 152785352 152785398 -2844722 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1750 219 69 0 0 chr4 152785402 152785431 -2844689 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1750 562 226 114 16 chr4 152786027 152786211 -2843909 - B3 SINE B2 0 216 15 4 1750 283 285 30 101 chr4 152786423 152786591 -2843529 + MLT1B LTR MaLR 150 305 -85 4 1750 1225 185 140 43 chr4 152786791 152787020 -2843100 + RLTR12B LTR ERVK 1 239 -289 4 1750 371 21 21 0 chr4 152787020 152787068 -2843052 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1750 1225 185 140 43 chr4 152787068 152787138 -2842982 + RLTR12B LTR ERVK 240 329 -199 4 1750 1265 194 21 21 chr4 152787161 152787445 -2842675 + RLTR12B LTR ERVK 245 528 0 4 1750 245 343 45 34 chr4 152787598 152787776 -2842344 - L1MB3 LINE L1 -49 6134 5955 4 1750 290 339 85 63 chr4 152789365 152789743 -2840377 - MLT2B3 LTR ERVL -62 492 107 4 1750 1325 221 128 6 chr4 152790178 152790529 -2839591 - MTD LTR MaLR -12 407 14 4 1750 392 196 12 17 chr4 152790984 152791088 -2839032 + MIRb SINE MIR 51 148 -60 4 1750 26 0 0 0 chr4 152791442 152791468 -2838652 + GC_rich Low_complexity Low_complexity 1 26 0 5 1750 552 100 0 0 chr4 152792390 152792470 -2837650 + (GGGA)n Simple_repeat Simple_repeat 1 80 0 5 1750 1734 155 128 15 chr4 152795239 152795566 -2834554 - ORR1B2 LTR MaLR -3 364 1 5 1750 252 333 92 75 chr4 152795694 152795989 -2834131 - MLT1E1A LTR MaLR -85 595 296 5 1750 216 0 0 0 chr4 152796451 152796475 -2833645 + (GGCTG)n Simple_repeat Simple_repeat 3 26 0 5 1750 719 235 67 62 chr4 152796591 152796786 -2833334 + B3A SINE B2 1 196 -2 5 1750 244 292 98 42 chr4 152797673 152797816 -2832304 + MTEa LTR MaLR 229 379 0 5 1750 484 273 99 88 chr4 152798175 152798448 -2831672 - B4 SINE B4 -16 276 1 5 1750 423 0 0 0 chr4 152799361 152799408 -2830712 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 1750 261 0 0 0 chr4 152799646 152799675 -2830445 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1750 675 37 0 0 chr4 152799675 152799756 -2830364 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1750 228 67 0 0 chr4 152803274 152803304 -2826816 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 5 1750 459 0 0 0 chr4 152805451 152805502 -2824618 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1750 195 167 0 0 chr4 152806300 152806342 -2823778 + (TGG)n Simple_repeat Simple_repeat 1 42 0 5 1750 229 286 9 0 chr4 152808342 152808447 -2821673 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 1750 538 278 41 15 chr4 152811158 152811355 -2818765 + L1MB7 LINE L1 5966 6167 -17 5 1750 186 208 0 0 chr4 152811379 152811427 -2818693 + GA-rich Low_complexity Low_complexity 2 49 0 5 1750 225 0 0 0 chr4 152812780 152812805 -2817315 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1750 226 302 0 0 chr4 152813007 152813060 -2817060 + MIR SINE MIR 93 145 -117 5 1750 208 196 48 48 chr4 152815478 152815644 -2814476 + (CAGGG)n Simple_repeat Simple_repeat 4 169 0 5 1750 217 212 41 53 chr4 152815838 152816007 -2814113 + (CAGGG)n Simple_repeat Simple_repeat 4 170 0 5 1750 240 35 0 0 chr4 152816568 152816597 -2813523 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1750 492 18 0 0 chr4 152818460 152818517 -2811603 + (TTA)n Simple_repeat Simple_repeat 2 58 0 5 1750 407 285 7 16 chr4 152818750 152819059 -2811061 + (TGGA)n Simple_repeat Simple_repeat 1 305 0 5 1750 1037 129 6 0 chr4 152822318 152822489 -2807631 + (TC)n Simple_repeat Simple_repeat 1 172 0 5 1750 326 254 30 15 chr4 152823566 152823841 -2806279 + (TATATG)n Simple_repeat Simple_repeat 1 279 0 5 1750 209 263 19 19 chr4 152823892 152824051 -2806069 + (TATATG)n Simple_repeat Simple_repeat 6 164 0 5 1750 226 253 26 20 chr4 152824131 152824284 -2805836 + (TATATG)n Simple_repeat Simple_repeat 1 154 0 5 1750 288 368 32 32 chr4 152824730 152824918 -2805202 + MLT1C LTR MaLR 276 463 -4 5 1750 256 308 0 0 chr4 152828673 152828738 -2801382 + MLT1B LTR MaLR 60 124 -266 5 1750 261 306 89 73 chr4 152828809 152829141 -2800979 + MLT2B4 LTR ERVL 56 383 -31 5 1750 363 78 0 0 chr4 152829143 152829194 -2800926 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1750 22 0 0 0 chr4 152829218 152829240 -2800880 + AT_rich Low_complexity Low_complexity 1 22 0 5 1750 374 315 0 27 chr4 152829341 152829452 -2800668 - Tigger5 DNA MER2_type -2298 108 1 5 218 1531 208 26 12 chr4 152829730 152830070 -2800050 + ORR1D1 LTR MaLR 1 345 -29 5 1751 231 36 0 0 chr4 152830070 152830098 -2800022 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1751 238 274 141 12 chr4 152836728 152836813 -2793307 + MTEb LTR MaLR 18 113 -257 5 1751 293 268 92 10 chr4 152836873 152836971 -2793149 + MTEb LTR MaLR 267 372 -7 5 1751 231 275 111 12 chr4 152837138 152837219 -2792901 + L1M4 LINE L1 5818 5906 -268 5 1751 351 278 26 29 chr4 152837788 152837916 -2792204 + MIR SINE MIR 67 197 -71 5 1751 980 63 28 11 chr4 152838036 152838213 -2791907 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1751 201 74 0 0 chr4 152838991 152839018 -2791102 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1751 223 177 30 75 chr4 152839036 152839103 -2791017 + C-rich Low_complexity Low_complexity 3 66 0 5 1751 976 224 35 15 chr4 152839878 152840077 -2790043 + B3 SINE B2 4 206 -10 5 1751 462 345 79 0 chr4 152840112 152840277 -2789843 + ID_B1 SINE B4 13 190 -34 5 1751 282 241 109 18 chr4 152840893 152841024 -2789096 + MIRc SINE MIR 15 155 -107 5 1751 286 273 155 77 chr4 152842049 152842204 -2787916 + B4A SINE B4 3 169 -123 5 1751 292 226 21 0 chr4 152842305 152842398 -2787722 + (TG)n Simple_repeat Simple_repeat 1 95 0 5 1751 441 257 0 0 chr4 152842428 152842607 -2787513 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1751 291 203 0 0 chr4 152842645 152842719 -2787401 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1751 374 250 0 7 chr4 152842733 152842886 -2787234 + (TG)n Simple_repeat Simple_repeat 1 152 0 5 1751 256 282 33 25 chr4 152842938 152843058 -2787062 + L1M4 LINE L1 5777 5897 -281 5 1751 396 59 0 0 chr4 152843105 152843156 -2786964 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 5 1751 398 347 30 23 chr4 152843762 152844003 -2786117 + MIRc SINE MIR 1 234 -34 5 1751 281 312 21 35 chr4 152845214 152845357 -2784763 - L1MD LINE L1 -806 5553 5413 5 1751 618 265 9 121 chr4 152845610 152845842 -2784278 - B4A SINE B4 -86 206 1 5 1751 351 368 146 14 chr4 152845843 152846193 -2783927 - L1MD LINE L1 -981 5165 4770 5 1751 929 276 148 8 chr4 152846807 152847158 -2782962 + MTD LTR MaLR 5 404 -15 5 1751 495 304 139 17 chr4 152847196 152847484 -2782636 - L1MD LINE L1 -1788 4358 4036 5 1751 299 239 14 0 chr4 152847518 152847589 -2782531 - L1M4 LINE L1 -2197 3949 3878 5 1751 772 224 36 4 chr4 152847675 152847870 -2782250 + B3 SINE B2 9 210 -6 5 1751 683 178 0 22 chr4 152848789 152848973 -2781147 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1751 731 204 2 2 chr4 152848986 152849513 -2780607 + (CA)n Simple_repeat Simple_repeat 1 527 0 5 1751 247 281 0 0 chr4 152853801 152853865 -2776255 + C-rich Low_complexity Low_complexity 1 64 0 5 1751 306 0 0 0 chr4 152854730 152854764 -2775356 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 5 1751 21 0 0 0 chr4 152855908 152855929 -2774191 + GC_rich Low_complexity Low_complexity 1 21 0 5 1751 42 20 0 0 chr4 152856368 152856417 -2773703 + GC_rich Low_complexity Low_complexity 1 49 0 5 1751 25 75 0 0 chr4 152856430 152856483 -2773637 + GC_rich Low_complexity Low_complexity 1 53 0 5 1751 42 92 0 0 chr4 152856927 152857046 -2773074 + GC_rich Low_complexity Low_complexity 1 119 0 5 1751 303 219 16 0 chr4 152858946 152859010 -2771110 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 5 1751 256 288 12 36 chr4 152859010 152859024 -2771096 + ID4_ SINE ID 8 83 0 5 1751 618 132 493 0 chr4 152859066 152859210 -2770910 + B3 SINE B2 1 215 -1 5 1751 249 33 0 0 chr4 152859952 152859982 -2770138 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1751 250 365 0 0 chr4 152860010 152860114 -2770006 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1751 378 61 0 0 chr4 152861888 152861937 -2768183 + (GGA)n Simple_repeat Simple_repeat 1 49 0 5 1751 203 275 14 0 chr4 152862476 152862545 -2767575 + (CAT)n Simple_repeat Simple_repeat 3 72 0 5 1751 407 293 45 57 chr4 152862551 152862728 -2767392 + HAL1-2a_MD LINE L1 2351 2525 -499 5 1751 318 194 0 0 chr4 152862748 152862820 -2767300 + (CCA)n Simple_repeat Simple_repeat 1 72 0 5 1751 576 271 44 29 chr4 152864199 152864404 -2765716 - B3 SINE B2 0 216 9 5 1751 438 169 0 0 chr4 152864469 152864558 -2765562 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1751 250 224 0 0 chr4 152864568 152864617 -2765503 - tRNA-Ala-GCA tRNA tRNA -14 61 13 5 1751 296 286 100 67 chr4 152864621 152864741 -2765379 - PB1 SINE Alu -2 125 2 5 1751 421 336 132 38 chr4 152865474 152865762 -2764358 - MER2 DNA MER2_type -5 340 26 5 1751 213 39 0 0 chr4 152867446 152867472 -2762648 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1751 723 173 5 27 chr4 152867666 152867850 -2762270 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 5 1751 383 137 14 0 chr4 152867874 152867947 -2762173 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 5 1751 1491 319 91 75 chr4 152869216 152870100 -2760020 + BLACKJACK DNA AcHobo 1752 2649 -295 5 1751 733 258 30 20 chr4 152870093 152870295 -2759825 + B3 SINE B2 9 212 -4 5 1751 26 64 0 0 chr4 152870385 152870432 -2759688 + AT_rich Low_complexity Low_complexity 1 47 0 5 1751 512 255 5 0 chr4 152871153 152871379 -2758741 + (CAGAG)n Simple_repeat Simple_repeat 1 227 0 5 1751 625 107 8 32 chr4 152872375 152872501 -2757619 + (TCTCC)n Simple_repeat Simple_repeat 2 124 0 5 1751 224 250 31 0 chr4 152875591 152875655 -2754465 + GA-rich Low_complexity Low_complexity 2 67 0 5 1751 228 35 0 0 chr4 152875998 152876027 -2754093 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1751 1579 138 124 0 chr4 152876940 152877231 -2752889 + IAPEY3_LTR LTR ERVK 1 327 -5 5 1751 208 350 189 5 chr4 152877352 152877553 -2752567 - MIRb SINE MIR -6 262 25 5 1751 804 274 124 8 chr4 152877724 152878086 -2752034 - MTD LTR MaLR -2 417 14 5 1751 225 336 24 63 chr4 152879045 152879172 -2750948 + ORR1E LTR MaLR 16 137 -222 5 1751 674 105 9 0 chr4 152879204 152879309 -2750811 + (TC)n Simple_repeat Simple_repeat 2 107 0 5 1751 22 56 0 0 chr4 152881443 152881479 -2748641 + AT_rich Low_complexity Low_complexity 1 36 0 5 1751 877 217 0 62 chr4 152881634 152881845 -2748275 - B3A SINE B2 0 198 1 5 1751 357 238 26 87 chr4 152881912 152882027 -2748093 - B1F1 SINE Alu 0 149 42 5 1751 238 236 35 41 chr4 152882706 152882878 -2747242 + (CAGAC)n Simple_repeat Simple_repeat 4 174 0 5 1751 206 249 35 41 chr4 152883256 152883428 -2746692 + (CAGAC)n Simple_repeat Simple_repeat 4 174 0 5 1751 2312 191 5 9 chr4 152883550 152883973 -2746147 + MTC LTR MaLR 1 421 0 5 1751 698 107 0 9 chr4 152884639 152884676 -2745444 + (GAA)n Simple_repeat Simple_repeat 2 37 0 5 1751 1494 33 0 0 chr4 152884676 152884856 -2745264 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1751 698 107 0 9 chr4 152884856 152884931 -2745189 + (GAA)n Simple_repeat Simple_repeat 2 76 0 5 1751 207 196 43 0 chr4 152884989 152885035 -2745085 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 5 1751 1446 184 4 18 chr4 152885511 152885787 -2744333 - ORR1B1 LTR MaLR -61 333 62 5 1751 721 147 1 18 chr4 152885815 152885966 -2744154 - ORR1B1 LTR MaLR -267 127 1 5 1751 277 293 40 0 chr4 152886815 152886914 -2743206 + RMER15 LTR ERVL 422 524 -51 6 1751 240 35 0 0 chr4 152887733 152887762 -2742358 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1751 1825 148 66 119 chr4 152887858 152888295 -2741825 + MTC LTR MaLR 1 414 -7 6 1751 309 312 142 43 chr4 152888585 152888843 -2741277 - ORR1D2 LTR MaLR -76 283 1 6 1751 480 270 25 24 chr4 152888939 152889113 -2741007 - B3A SINE B2 -3 192 21 6 1751 415 244 0 0 chr4 152889318 152889400 -2740720 - RSINE1 SINE B4 -15 150 69 6 1751 298 192 26 26 chr4 152890470 152890625 -2739495 + GA-rich Low_complexity Low_complexity 2 156 0 6 1751 738 160 0 0 chr4 152890901 152891032 -2739088 + (CAGAGA)n Simple_repeat Simple_repeat 1 131 0 6 1751 326 312 80 34 chr4 152891254 152891430 -2738690 - RMER15 LTR ERVL -14 561 378 6 1751 180 0 0 0 chr4 152891474 152891494 -2738626 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 6 1751 194 264 138 39 chr4 152892138 152892268 -2737852 + L2 LINE L2 1964 2106 -1313 6 1751 202 355 142 19 chr4 152892433 152892694 -2737426 + L2 LINE L2 2111 2403 -1016 6 1751 963 83 0 0 chr4 152892694 152892827 -2737293 - ORR1A3 LTR MaLR 0 326 194 6 1751 1949 95 11 0 chr4 152892833 152893116 -2737004 - ORR1A2 LTR MaLR 0 327 42 6 1751 1025 274 42 10 chr4 152893378 152893666 -2736454 - RMER15 LTR ERVL 0 575 279 6 1751 370 278 21 83 chr4 152893696 152893841 -2736279 - RMER15 LTR ERVL -436 139 4 6 1751 463 288 31 22 chr4 152894206 152894594 -2735526 + L1MEg LINE L1 5266 5479 -694 6 1751 437 292 0 0 chr4 152894642 152894820 -2735300 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 1751 180 0 0 0 chr4 152894855 152894875 -2735245 + (TAGA)n Simple_repeat Simple_repeat 3 22 0 6 1751 443 33 0 32 chr4 152894901 152894963 -2735157 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 1751 992 242 210 21 chr4 152895530 152895557 -2734563 - MTC LTR MaLR -21 400 367 6 1751 2064 133 5 93 chr4 152895557 152895978 -2734142 - ORR1C2 LTR MaLR 0 384 1 6 1751 992 242 210 21 chr4 152895978 152896283 -2733837 - MTC LTR MaLR -55 366 5 6 1751 877 222 52 26 chr4 152896697 152896928 -2733192 + B4A SINE B4 5 241 -51 6 1751 407 272 8 66 chr4 152896930 152897052 -2733068 + MTD LTR MaLR 18 132 -289 6 1751 2773 12 3 0 chr4 152897061 152897398 -2732722 - ORR1A0 LTR MaLR -8 338 1 6 1751 958 241 159 0 chr4 152897400 152897645 -2732475 + MTD LTR MaLR 135 418 -1 6 1751 326 328 33 16 chr4 152897651 152897772 -2732348 - RMER15 LTR ERVL -162 413 291 6 1751 252 356 0 0 chr4 152897975 152898228 -2731892 + (CA)n Simple_repeat Simple_repeat 1 253 0 6 1751 243 0 0 0 chr4 152898228 152898255 -2731865 + (CAG)n Simple_repeat Simple_repeat 1 27 0 6 1751 200 189 0 0 chr4 152898717 152898754 -2731366 + CT-rich Low_complexity Low_complexity 4 40 0 6 1751 355 262 87 39 chr4 152898863 152898990 -2731130 - MER103 DNA DNA -12 154 22 6 1751 21 0 0 0 chr4 152899378 152899399 -2730721 + AT_rich Low_complexity Low_complexity 1 21 0 6 1751 204 222 0 0 chr4 152899411 152899483 -2730637 + GA-rich Low_complexity Low_complexity 1 72 0 6 1751 443 196 21 21 chr4 152900511 152900605 -2729515 + B1_Mur1 SINE Alu 49 142 -7 6 1751 270 0 0 0 chr4 152900953 152900983 -2729137 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 6 1751 469 184 43 16 chr4 152901777 152902032 -2728088 + GA-rich Low_complexity Low_complexity 1 262 0 6 1751 235 241 27 34 chr4 152902053 152902199 -2727921 + GA-rich Low_complexity Low_complexity 3 147 0 6 1751 277 301 38 28 chr4 152902217 152902323 -2727797 - B4A SINE B4 -93 199 93 6 1751 612 168 3 30 chr4 152902975 152903286 -2726834 + (TG)n Simple_repeat Simple_repeat 1 302 0 6 1751 269 269 92 101 chr4 152903290 152903350 -2726770 - B3 SINE B2 -11 205 1 6 1751 442 340 7 20 chr4 152903350 152903497 -2726623 - RSINE1 SINE B4 -19 146 2 6 1751 550 270 0 33 chr4 152905107 152905260 -2724860 + MLT1B LTR MaLR 23 170 -220 6 1751 757 277 58 81 chr4 152906685 152907082 -2723038 - MTE2a LTR MaLR -14 405 17 6 1751 213 211 0 0 chr4 152908207 152908264 -2721856 + (TCCG)n Simple_repeat Simple_repeat 4 60 0 6 1751 2570 230 121 30 chr4 152909598 152910292 -2719828 - Lx6 LINE L1 -26 7434 6678 6 1751 937 96 0 0 chr4 152910301 152910436 -2719684 - L1_Mur3 LINE L1 -870 5010 4876 6 1751 1844 179 11 6 chr4 152910433 152910799 -2719321 + L1_Mur3 LINE L1 4503 4870 -1010 6 1751 642 287 81 10 chr4 152910890 152911087 -2719033 + B4A SINE B4 5 215 -77 6 1751 741 43 0 0 chr4 152911097 152911190 -2718930 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 6 1751 265 153 36 60 chr4 152911190 152911357 -2718763 + (TCTA)n Simple_repeat Simple_repeat 1 163 0 6 1751 236 250 0 0 chr4 152911415 152911463 -2718657 + B4A SINE B4 222 269 -23 6 1751 324 0 0 0 chr4 152911465 152911501 -2718619 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1751 503 151 24 8 chr4 152912589 152912716 -2717404 + (CA)n Simple_repeat Simple_repeat 1 129 0 6 1751 1093 95 0 0 chr4 152912836 152912984 -2717136 + B1_Mus1 SINE Alu 1 148 0 6 1751 755 278 41 18 chr4 152913259 152913479 -2716641 - B4 SINE B4 -5 287 63 6 1751 401 293 87 35 chr4 152913868 152914041 -2716079 + B3A SINE B2 1 182 -16 6 1751 309 269 6 12 chr4 152914068 152914241 -2715879 + (CA)n Simple_repeat Simple_repeat 1 172 0 6 1751 410 269 0 6 chr4 152914260 152914417 -2715703 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 1751 1134 235 104 23 chr4 152914847 152915231 -2714889 + MTD LTR MaLR 5 419 0 6 1751 246 336 45 27 chr4 152917251 152917361 -2712759 + B4A SINE B4 37 148 -144 6 1751 446 275 119 70 chr4 152917361 152917588 -2712532 + Lx8 LINE L1 7176 7413 -60 6 1751 1182 78 0 10 chr4 152917588 152917886 -2712234 + (TG)n Simple_repeat Simple_repeat 1 294 0 6 1751 309 280 18 107 chr4 152917995 152918107 -2712013 - B4A SINE B4 -141 151 50 6 1751 271 242 15 0 chr4 152922206 152922272 -2707848 - MLT1D LTR MaLR -28 567 501 6 1751 241 360 61 0 chr4 152922740 152922927 -2707193 - L1MD LINE L1 -495 5864 5668 6 1751 313 307 156 6 chr4 152922970 152923137 -2706983 - MLT1D LTR MaLR -2 503 312 6 1751 259 370 7 58 chr4 152923221 152923376 -2706744 - MLT1D LTR MaLR -461 166 20 6 1751 349 296 121 6 chr4 152923541 152923714 -2706406 - L1M4 LINE L1 -691 5492 5300 6 1751 260 337 0 0 chr4 152923727 152923810 -2706310 - ID2 SINE ID 0 83 1 6 1751 878 221 52 38 chr4 152923838 152923881 -2706239 - B3 SINE B2 -1 215 178 6 1751 2302 87 9 0 chr4 152923881 152924204 -2705916 + ORR1A2 LTR MaLR 2 327 0 6 1751 878 221 52 38 chr4 152924204 152924372 -2705748 - B3 SINE B2 -39 177 1 6 1751 313 200 148 12 chr4 152924468 152924549 -2705571 + B1F SINE Alu 3 94 -55 6 1751 348 329 88 15 chr4 152924575 152924836 -2705284 - L1M4 LINE L1 -966 5180 4898 6 1751 671 243 53 6 chr4 152924842 152925012 -2705108 + B3 SINE B2 1 178 -38 6 1751 296 77 19 0 chr4 152925029 152925081 -2705039 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1751 298 342 147 37 chr4 152925108 152925678 -2704442 - L1M4 LINE L1 -1306 4840 4208 6 1751 414 121 0 0 chr4 152925708 152925774 -2704346 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1751 393 269 30 37 chr4 152926003 152926138 -2703982 + RMER15 LTR ERVL 337 470 -105 6 1751 270 0 0 0 chr4 152926148 152926178 -2703942 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1751 393 212 12 0 chr4 152927014 152927099 -2703021 - RSINE1 SINE B4 -78 87 2 6 1751 343 306 51 15 chr4 152927364 152927569 -2702551 - B4 SINE B4 -37 255 8 6 1751 921 124 0 0 chr4 152928396 152928557 -2701563 + (TC)n Simple_repeat Simple_repeat 2 162 0 6 1751 235 247 13 27 chr4 152928576 152928594 -2701526 + polypyrimidine Low_complexity Low_complexity 57 74 0 6 1751 189 0 0 0 chr4 152928594 152928615 -2701505 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 1751 235 247 13 27 chr4 152928615 152928671 -2701449 + polypyrimidine Low_complexity Low_complexity 1 56 0 6 1751 430 237 15 37 chr4 152929050 152929186 -2700934 + RSINE1 SINE B4 11 143 -22 6 1751 321 118 0 0 chr4 152929448 152929499 -2700621 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 6 1751 219 113 32 16 chr4 152929514 152929577 -2700543 + (TCTCTG)n Simple_repeat Simple_repeat 1 64 0 6 1751 313 331 13 13 chr4 152929589 152929748 -2700372 + CT-rich Low_complexity Low_complexity 1 159 0 6 1751 744 164 0 0 chr4 152930213 152930440 -2699680 + (TG)n Simple_repeat Simple_repeat 1 227 0 6 1751 601 243 54 0 chr4 152930443 152930591 -2699529 - RSINE1 SINE B4 -1 164 9 6 1751 180 0 0 0 chr4 152930852 152930872 -2699248 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 6 1751 209 340 86 53 chr4 152931797 152931949 -2698171 - MIRb SINE MIR -72 196 40 6 1751 477 243 49 14 chr4 152932987 152933129 -2696991 - Ricksha_c DNA MuDR -1493 555 409 6 1751 386 234 31 118 chr4 152933129 152933256 -2696864 - B1F2 SINE Alu -7 140 25 6 1751 249 33 0 0 chr4 152934918 152934948 -2695172 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1751 387 0 0 0 chr4 152934948 152934990 -2695130 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1751 24 0 0 0 chr4 152934993 152935017 -2695103 + AT_rich Low_complexity Low_complexity 1 24 0 6 1751 342 0 0 0 chr4 152936536 152936574 -2693546 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1751 301 403 74 10 chr4 152936580 152936876 -2693244 - L1MC4a LINE L1 -2006 5876 5562 6 1751 362 257 113 14 chr4 152937274 152937318 -2692802 - B2_Mm2 SINE B2 -2 193 144 6 1751 342 0 0 0 chr4 152937318 152937356 -2692764 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1751 405 261 150 3 chr4 152937356 152937469 -2692651 - B3A SINE B2 -43 150 27 6 1751 503 267 164 11 chr4 152937482 152937671 -2692449 - MTD LTR MaLR -54 365 148 6 1751 441 345 48 33 chr4 152937789 152938185 -2691935 - L1MA6 LINE L1 -2 6298 5895 6 1751 315 0 0 0 chr4 152939785 152939820 -2690300 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1751 459 0 0 0 chr4 152939820 152939870 -2690250 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1751 206 222 0 0 chr4 152940001 152940037 -2690083 + polypurine Low_complexity Low_complexity 1 36 0 6 1751 186 43 0 0 chr4 152940041 152940064 -2690056 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 6 1751 318 244 29 6 chr4 152940092 152940265 -2689855 + GA-rich Low_complexity Low_complexity 1 177 0 6 1751 213 167 0 0 chr4 152940270 152940324 -2689796 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1751 387 0 0 0 chr4 152940324 152940367 -2689753 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1751 596 274 53 14 chr4 152940430 152940637 -2689483 - MLT2D LTR ERVL -181 233 19 7 1751 1207 252 48 4 chr4 152941002 152941273 -2688847 + B4A SINE B4 8 290 -2 7 1751 204 343 7 36 chr4 152941277 152941416 -2688704 + (CA)n Simple_repeat Simple_repeat 1 135 0 7 1751 379 198 0 31 chr4 152941429 152941559 -2688561 + (CA)n Simple_repeat Simple_repeat 2 127 0 7 1751 497 198 4 80 chr4 152941873 152942361 -2687759 + (CAGGG)n Simple_repeat Simple_repeat 1 451 0 7 1751 275 221 0 29 chr4 152943500 152943570 -2686550 - MLT1B LTR MaLR -19 355 288 7 1751 286 280 95 8 chr4 152943765 152943891 -2686229 - MLT1B LTR MaLR -231 159 23 7 1751 1006 257 63 108 chr4 152944248 152944645 -2685475 + MTE2a LTR MaLR 1 379 0 7 1751 1764 180 12 9 chr4 152945994 152946331 -2683789 + ORR1A1 LTR MaLR 1 338 -8 7 1751 806 234 30 30 chr4 152946593 152946791 -2683329 - B3A SINE B2 0 198 1 7 1751 231 284 153 30 chr4 152946801 152947004 -2683116 - L1MD3 LINE L1 -13 7982 7755 7 1751 475 366 48 0 chr4 152947650 152947877 -2682243 + Cheshire DNA MER1_type 1 238 -2182 7 1751 194 128 26 0 chr4 152947947 152947986 -2682134 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1751 239 333 68 0 chr4 152948115 152948219 -2681901 - MLT1C LTR MaLR -39 428 241 7 1751 823 256 118 23 chr4 152949817 152950171 -2679949 + MTD LTR MaLR 1 411 -8 7 1751 3994 48 2 6 chr4 152950388 152950872 -2679248 + L1Md_F2 LINE L1 6101 6582 0 7 1751 363 202 165 9 chr4 152951313 152951428 -2678692 - MER2 DNA MER2_type -129 216 84 7 1751 24 0 0 0 chr4 152951495 152951519 -2678601 + AT_rich Low_complexity Low_complexity 1 24 0 7 1751 1127 142 14 13 chr4 152951519 152951726 -2678394 - B2_Mm2 SINE B2 0 216 2 7 1751 248 300 51 51 chr4 152952456 152952593 -2677527 + RLTR9D LTR ERVK 45 181 -222 7 1751 396 40 0 0 chr4 152954841 152954891 -2675229 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1751 587 232 44 89 chr4 152954908 152954997 -2675123 - RMER30 DNA MER1_type -12 190 105 7 1751 562 258 214 0 chr4 152954997 152955179 -2674941 - ID_B1 SINE B4 -2 222 2 7 1751 587 232 44 89 chr4 152955179 152955269 -2674851 - RMER30 DNA MER1_type -98 104 19 7 1751 393 364 34 0 chr4 152957824 152958000 -2672120 + RMER15 LTR ERVL 324 505 -70 7 1751 1557 305 76 36 chr4 152958079 152958685 -2671435 - Lx8 LINE L1 -28 7445 6816 7 1751 1963 138 28 63 chr4 152959062 152959280 -2670840 - RMER17C LTR ERVK 0 410 184 7 1751 977 101 0 7 chr4 152959280 152959429 -2670691 + (GAA)n Simple_repeat Simple_repeat 3 150 0 7 1751 1963 138 28 63 chr4 152959429 152959635 -2670485 - RMER17C LTR ERVK -227 183 2 7 1751 352 296 82 7 chr4 152960219 152960365 -2669755 + MTD LTR MaLR 2 158 -263 7 1751 390 266 64 17 chr4 152960378 152960557 -2669563 + MTD LTR MaLR 206 419 0 7 1751 291 289 65 16 chr4 152960557 152960678 -2669442 - MLT1A LTR MaLR -16 358 232 7 1751 265 323 0 57 chr4 152960772 152960877 -2669243 - B4A SINE B4 -166 126 28 7 1751 275 315 37 9 chr4 152960881 152960990 -2669130 - MLT1A LTR MaLR -229 136 25 7 1752 1294 284 23 62 chr4 152962197 152962584 -2667536 - MTEa LTR MaLR -5 374 3 7 1752 1233 248 104 6 chr4 152963520 152963837 -2666283 - MTEa LTR MaLR -11 368 21 7 1752 261 283 103 34 chr4 152964610 152964727 -2665393 + MLT1A LTR MaLR 237 361 -13 7 1752 599 197 5 3 chr4 152966179 152966566 -2663554 + (TG)n Simple_repeat Simple_repeat 1 388 0 7 1752 421 331 33 26 chr4 152966571 152966723 -2663397 - RSINE1 SINE B4 -2 163 11 7 1752 301 290 55 90 chr4 152966958 152967159 -2662961 + MER77 LTR ERVL 56 249 -358 7 1752 247 275 114 57 chr4 152967818 152967976 -2662144 - MER2 DNA MER2_type -27 318 152 7 1752 1300 221 83 10 chr4 152969384 152969686 -2660434 + MTEb LTR MaLR 1 324 -55 7 1752 510 301 59 57 chr4 152970230 152970606 -2659514 + RMER15 LTR ERVL 30 531 -44 7 1752 2558 56 12 58 chr4 152970916 152971259 -2658861 - ORR1A2 LTR MaLR 0 327 1 7 1752 208 143 0 58 chr4 152971851 152971903 -2658217 + G-rich Low_complexity Low_complexity 1 49 0 7 1752 449 260 31 62 chr4 152971936 152972169 -2657951 - RMER20A LTR ERVK -179 448 163 7 1752 353 326 87 0 chr4 152972358 152972494 -2657626 + MTE-int LTR MaLR 786 933 -647 7 1752 1227 222 155 6 chr4 152972494 152972843 -2657277 + MTD LTR MaLR 1 401 -18 7 1752 903 282 23 23 chr4 152972870 152973131 -2656989 + MTE-int LTR MaLR 885 1145 -435 7 1752 231 340 41 34 chr4 152973160 152973306 -2656814 + MLT1C LTR MaLR 314 460 -7 7 1752 330 260 0 14 chr4 152975997 152976071 -2654049 + B4 SINE B4 8 80 -212 7 1752 772 264 73 40 chr4 152977599 152977871 -2652249 + B4 SINE B4 4 284 -8 7 1752 438 291 138 28 chr4 152977958 152978220 -2651900 + MLT1H1 LTR MaLR 2 290 -301 7 1752 391 253 261 11 chr4 152979804 152980062 -2650058 + MTEb LTR MaLR 12 334 -45 7 1752 1592 188 52 40 chr4 152980243 152980592 -2649528 + ORR1B1 LTR MaLR 40 392 -2 7 1752 494 282 176 8 chr4 152980757 152981007 -2649113 + RMER20B LTR ERVK 99 390 -237 7 1752 580 246 295 30 chr4 152981363 152981640 -2648480 + ORR1E LTR MaLR 7 356 -3 7 1752 257 360 22 0 chr4 152981668 152981757 -2648363 + ORR1E LTR MaLR 269 359 0 7 1752 380 291 69 11 chr4 152981912 152982086 -2648034 - MamRep434 DNA TcMar -179 247 64 7 1752 272 312 0 20 chr4 152982120 152982218 -2647902 + CT-rich Low_complexity Low_complexity 1 96 0 7 1752 2570 92 0 0 chr4 152982398 152982724 -2647396 - ORR1A3 LTR MaLR 0 326 1 7 1752 224 265 0 10 chr4 152982761 152982860 -2647260 + (TG)n Simple_repeat Simple_repeat 1 98 0 7 1752 400 273 93 0 chr4 152983011 152983161 -2646959 + B4A SINE B4 1 164 -128 7 1752 327 113 0 0 chr4 152983210 152983272 -2646848 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1752 325 275 106 21 chr4 152984564 152984705 -2645415 + MLT1B LTR MaLR 47 199 -191 7 1752 493 252 91 133 chr4 152985098 152985482 -2644638 - RLTR9A LTR ERVK 0 368 1 7 1752 386 275 41 138 chr4 152985496 152985787 -2644333 + ORR1E LTR MaLR 45 307 -52 7 1752 1658 197 92 22 chr4 152985787 152986146 -2643974 - ORR1C2 LTR MaLR 0 384 1 7 1752 315 0 0 0 chr4 152987640 152987675 -2642445 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1752 322 326 96 15 chr4 152987680 152987879 -2642241 - MLT1B LTR MaLR -123 267 53 7 1752 1365 77 44 0 chr4 152988654 152988837 -2641283 + B2_Mm2 SINE B2 1 191 -4 7 1752 671 266 54 71 chr4 152989470 152989822 -2640298 - RLTR15 LTR ERVK -12 347 2 7 1752 717 250 16 37 chr4 152989823 152990014 -2640106 + B3 SINE B2 24 210 -6 7 1752 449 355 30 76 chr4 152990040 152990302 -2639818 + MT2A LTR ERVL 162 411 -122 7 1752 309 332 65 20 chr4 152990318 152990518 -2639602 + MT2A LTR ERVL 325 533 0 7 1752 342 0 0 0 chr4 152990520 152990558 -2639562 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1752 2022 90 10 30 chr4 152991610 152991986 -2638134 - ORR1A2 LTR MaLR -8 338 1 7 1752 369 95 0 0 chr4 152992008 152992071 -2638049 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1752 22 56 0 0 chr4 152992797 152992833 -2637287 + AT_rich Low_complexity Low_complexity 1 36 0 7 1752 364 241 52 103 chr4 152992904 152993098 -2637022 - Lx7 LINE L1 -281 7415 7232 7 1752 1180 119 88 10 chr4 152993103 152993307 -2636813 + MTC LTR MaLR 13 232 -189 7 1752 528 129 0 12 chr4 152993312 152993398 -2636722 + MTC LTR MaLR 337 421 0 7 1752 203 103 0 25 chr4 152993468 152993508 -2636612 + (CGGGG)n Simple_repeat Simple_repeat 1 39 0 7 1752 441 0 0 0 chr4 152993856 152993905 -2636215 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1752 771 83 0 0 chr4 152994054 152994162 -2635958 + ORR1A2 LTR MaLR 1 108 -219 7 1752 1069 36 0 14 chr4 152994168 152994309 -2635811 + B1_Mm SINE Alu 9 147 0 7 1752 1139 59 0 0 chr4 152994311 152994447 -2635673 + B1_Mus2 SINE Alu 1 136 -11 7 1752 363 0 69 17 chr4 152994447 152994505 -2635615 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 7 1752 1422 76 62 0 chr4 152994505 152994715 -2635405 + ORR1A2 LTR MaLR 97 319 -8 7 1752 269 304 0 28 chr4 152995942 152996013 -2634107 + MER2 DNA MER2_type 3 71 -274 7 1752 379 303 12 79 chr4 152996024 152996070 -2634050 + B4A SINE B4 1 46 -246 7 1752 396 0 0 0 chr4 152996070 152996114 -2634006 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1752 379 303 12 79 chr4 152996114 152996232 -2633888 + B4A SINE B4 47 154 -138 7 1752 336 239 0 40 chr4 152996168 152996242 -2633878 + B1F1 SINE Alu 6 76 -73 7 1752 1169 187 20 0 chr4 152996245 152996448 -2633672 + B3 SINE B2 4 210 -6 7 1752 2378 77 55 0 chr4 152996477 152996787 -2633333 + ORR1A2 LTR MaLR 1 327 0 7 1752 527 355 69 4 chr4 152996791 152997023 -2633097 + MER2 DNA MER2_type 98 344 -1 7 1752 309 276 0 13 chr4 152997160 152997237 -2632883 + B3A SINE B2 1 76 -122 7 1752 534 214 79 16 chr4 152997534 152997724 -2632396 - Lx9 LINE L1 -24 7620 7419 7 1752 6902 159 27 26 chr4 152997729 153000000 -2630120 - Lx5 LINE L1 -2 7048 4703 7 1752 3876 144 83 8 chr4 153000000 153000386 -2629734 - L1_Mur2 LINE L1 -1175 4702 4289 1 1752 216 0 0 0 chr4 153000386 153000410 -2629710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1752 3876 144 83 8 chr4 153000410 153000766 -2629354 - L1_Mur2 LINE L1 -1589 4288 3905 1 1752 414 349 12 44 chr4 153001738 153002059 -2628061 + L1ME4a LINE L1 5619 5929 -195 3 1752 259 295 9 35 chr4 153002106 153002222 -2627898 + GA-rich Low_complexity Low_complexity 1 113 0 4 1752 3342 15 5 2 chr4 153002863 153003258 -2626862 + MTA_Mm LTR MaLR 1 396 0 5 1752 4312 107 83 4 chr4 153003788 153004471 -2625649 - RMER19A LTR ERVK 0 737 1 6 1752 818 273 95 7 chr4 153005261 153005534 -2624586 - MTEb LTR MaLR -79 300 4 7 1752 451 225 0 33 chr4 153005970 153006062 -2624058 + B4A SINE B4 2 90 -202 8 1752 1931 116 66 115 chr4 153006077 153006486 -2623634 - ORR1B1 LTR MaLR 0 394 6 9 1752 479 283 111 16 chr4 153006468 153006658 -2623462 + B4A SINE B4 70 277 -15 8 1752 23 33 0 0 chr4 153007010 153007040 -2623080 + AT_rich Low_complexity Low_complexity 1 30 0 1 1752 294 179 0 0 chr4 153007307 153007363 -2622757 + T-rich Low_complexity Low_complexity 1 56 0 1 1752 1069 225 62 83 chr4 153008571 153008958 -2621162 + MTEa LTR MaLR 1 379 0 1 1752 685 185 11 17 chr4 153009594 153009775 -2620345 + CT-rich Low_complexity Low_complexity 1 180 0 1 1752 617 251 11 67 chr4 153010578 153010757 -2619363 - B3A SINE B2 0 198 30 1 1752 985 224 118 82 chr4 153010758 153011123 -2618997 + MTE2b LTR MaLR 1 378 -1 1 1752 234 263 0 146 chr4 153011125 153011214 -2618906 - MER58A DNA MER1_type -148 76 1 1 1752 2811 63 9 57 chr4 153011589 153012009 -2618111 - MTB LTR MaLR 0 400 1 1 1752 1017 218 148 45 chr4 153013001 153013332 -2616788 - ORR1D2 LTR MaLR 0 370 6 1 1752 404 356 93 21 chr4 153014804 153015224 -2614896 + L1M5 LINE L1 3995 4445 -1701 1 1752 587 287 76 10 chr4 153015569 153015766 -2614354 + B4 SINE B4 82 291 -1 2 1752 314 104 21 0 chr4 153015860 153015908 -2614212 - HAL1-3A_ME LINE L1 -834 2024 1976 2 1752 248 183 0 24 chr4 153015908 153015992 -2614128 + (TCTG)n Simple_repeat Simple_repeat 4 85 0 2 1752 509 264 9 0 chr4 153016152 153016258 -2613862 - RSINE1 SINE B4 -28 137 31 2 1752 500 252 32 0 chr4 153016259 153016382 -2613738 - MTD LTR MaLR 0 419 293 2 1752 338 318 54 43 chr4 153016877 153017061 -2613059 - B4A SINE B4 -100 192 7 2 1752 314 255 26 70 chr4 153017226 153017340 -2612780 + MLT1A1 LTR MaLR 300 408 0 2 1752 268 261 8 8 chr4 153018005 153018136 -2611984 + (TATG)n Simple_repeat Simple_repeat 4 134 0 2 1752 284 299 21 0 chr4 153018157 153018254 -2611866 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1752 736 302 54 0 chr4 153018268 153018490 -2611630 - B4A SINE B4 -58 234 1 2 1752 906 206 75 0 chr4 153019665 153019864 -2610256 + B3 SINE B2 2 215 -1 3 1752 624 239 0 0 chr4 153019883 153020046 -2610074 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1752 1144 245 101 3 chr4 153020070 153020377 -2609743 + MTEb LTR MaLR 43 379 0 3 1752 348 259 0 11 chr4 153020410 153020500 -2609620 - MLT1B LTR MaLR -257 133 45 3 1752 861 238 141 0 chr4 153020966 153021222 -2608898 + RMER15 LTR ERVL 284 575 0 3 1752 578 109 47 35 chr4 153021670 153021841 -2608279 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 3 1752 2248 77 48 0 chr4 153022948 153023260 -2606860 + ORR1A2 LTR MaLR 1 327 0 3 1752 243 140 0 0 chr4 153024105 153024155 -2605965 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 3 1752 219 69 0 0 chr4 153024969 153024998 -2605122 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1752 297 0 0 0 chr4 153026653 153026686 -2603434 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1752 513 282 0 21 chr4 153026766 153026911 -2603209 + ID_B1 SINE B4 82 223 -1 4 1752 225 0 0 0 chr4 153026932 153026957 -2603163 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1752 285 241 65 54 chr4 153027502 153027594 -2602526 + MTD LTR MaLR 275 367 -52 4 1752 180 176 0 0 chr4 153028002 153028036 -2602084 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1752 405 0 0 0 chr4 153028922 153028967 -2601153 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1752 257 250 0 13 chr4 153029179 153029256 -2600864 + L1M1 LINE L1 5544 5619 -684 4 1752 721 202 191 0 chr4 153029503 153029681 -2600439 + ID_B1 SINE B4 3 214 -10 4 1752 28 48 0 0 chr4 153029694 153029736 -2600384 + AT_rich Low_complexity Low_complexity 1 42 0 4 1752 399 21 0 0 chr4 153031404 153031452 -2598668 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1752 365 208 256 0 chr4 153031787 153031912 -2598208 + MTEb LTR MaLR 219 375 -4 4 1752 639 290 15 21 chr4 153032139 153032463 -2597657 + L1M5 LINE L1 3499 3815 -2331 5 1752 399 234 6 33 chr4 153032668 153032849 -2597271 + GA-rich Low_complexity Low_complexity 4 179 0 5 1752 707 271 99 34 chr4 153033118 153033351 -2596769 + B4 SINE B4 45 292 0 5 1752 399 384 69 21 chr4 153033352 153033730 -2596390 + L1M5 LINE L1 4307 4702 -1444 5 1752 189 0 0 0 chr4 153033776 153033797 -2596323 + (GGGTG)n Simple_repeat Simple_repeat 5 25 0 5 1752 217 192 0 52 chr4 153033834 153033911 -2596209 + (CCCTAA)n Simple_repeat Simple_repeat 5 77 0 5 1752 913 263 31 4 chr4 153033913 153034142 -2595978 + B4 SINE B4 54 288 -4 5 1752 246 116 0 0 chr4 153034171 153034214 -2595906 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1752 408 20 0 0 chr4 153034214 153034262 -2595858 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1752 225 0 0 0 chr4 153034262 153034287 -2595833 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1752 1179 61 0 0 chr4 153034337 153034485 -2595635 + B1_Mus1 SINE Alu 1 148 0 5 1752 1215 156 101 123 chr4 153035164 153035491 -2594629 - MTC LTR MaLR 0 419 48 6 1752 1067 68 0 26 chr4 153035491 153035642 -2594478 + B1_Mm SINE Alu 1 147 0 6 1752 1215 152 74 142 chr4 153035642 153035709 -2594411 - MTC LTR MaLR -367 54 1 6 1752 266 201 69 0 chr4 153036093 153036172 -2593948 - MLT2B3 LTR ERVL -355 362 274 6 1752 226 132 0 0 chr4 153037687 153037725 -2592395 - L1MB2 LINE L1 -106 6065 6028 6 1752 681 290 20 35 chr4 153037743 153037977 -2592143 + B4 SINE B4 42 278 -14 6 1752 290 26 0 25 chr4 153037994 153038034 -2592086 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1752 32 0 0 0 chr4 153038119 153038151 -2591969 + AT_rich Low_complexity Low_complexity 1 32 0 6 1752 695 257 94 13 chr4 153038311 153038618 -2591502 - L1MC3 LINE L1 -238 7547 7216 6 1752 1486 188 131 39 chr4 153039950 153040332 -2589788 - MTD LTR MaLR -2 417 1 6 1752 1913 115 27 7 chr4 153040686 153041017 -2589103 - ORR1A2 LTR MaLR 0 346 12 6 1752 226 155 17 0 chr4 153041002 153041060 -2589060 - ORR1A1 LTR MaLR -244 102 44 7 1752 482 149 0 21 chr4 153041133 153041244 -2588876 - ORR1A2 LTR MaLR -237 109 1 7 1752 2368 139 21 35 chr4 153041461 153041886 -2588234 + Lx2 LINE L1 6578 6996 -1 7 1752 504 266 84 25 chr4 153042799 153042996 -2587124 + ID_B1 SINE B4 1 224 -68 7 1752 790 253 193 19 chr4 153044074 153044344 -2585776 - MTD LTR MaLR -14 405 89 7 1752 336 252 29 29 chr4 153044651 153044753 -2585367 - MTD LTR MaLR -308 111 10 7 1752 1045 213 5 0 chr4 153044888 153045099 -2585021 + B3 SINE B2 1 212 -4 7 1752 25 0 0 0 chr4 153045441 153045466 -2584654 + AT_rich Low_complexity Low_complexity 1 25 0 7 1752 1101 82 0 0 chr4 153045538 153045685 -2584435 + B1_Mus1 SINE Alu 2 148 0 7 1752 378 107 0 0 chr4 153045685 153045741 -2584379 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 7 1752 288 0 0 0 chr4 153046073 153046105 -2584015 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1752 189 0 0 0 chr4 153046105 153046125 -2583995 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1752 836 235 68 44 chr4 153047309 153047554 -2582566 - MTEa LTR MaLR -119 260 1 8 1752 255 239 159 0 chr4 153047695 153047783 -2582337 + B1F1 SINE Alu 3 104 -45 8 1752 1200 111 0 0 chr4 153047784 153048090 -2582030 + (TTC)n Simple_repeat Simple_repeat 1 306 0 8 1752 846 188 0 0 chr4 153048182 153048352 -2581768 + CT-rich Low_complexity Low_complexity 2 171 0 8 1752 511 327 106 5 chr4 153048379 153048597 -2581523 - MLT1A0 LTR MaLR -121 244 5 8 1752 24 0 0 0 chr4 153048874 153048898 -2581222 + AT_rich Low_complexity Low_complexity 1 24 0 8 1752 837 317 103 15 chr4 153049040 153049508 -2580612 - L1MC1 LINE L1 -76 6257 5749 8 1752 391 194 157 0 chr4 153049542 153049650 -2580470 - L1MC1 LINE L1 -646 5687 5563 8 1752 992 210 167 19 chr4 153049836 153050093 -2580027 + ORR1D2 LTR MaLR 76 370 0 8 1752 416 327 32 38 chr4 153050142 153050381 -2579739 - L1MC1 LINE L1 -817 5527 5293 8 1752 477 0 0 0 chr4 153050454 153050507 -2579613 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1752 274 62 0 84 chr4 153050597 153050668 -2579452 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 9 1752 573 341 122 6 chr4 153052031 153052385 -2577735 + MLT1C LTR MaLR 42 436 -31 9 1752 572 310 67 59 chr4 153053968 153054222 -2575898 - MLT1B LTR MaLR -49 341 86 9 1752 259 242 0 0 chr4 153055024 153055086 -2575034 - RSINE1 SINE B4 -101 64 3 9 1752 500 288 89 5 chr4 153055232 153055445 -2574675 + MLT1B LTR MaLR 35 265 -125 9 1752 203 343 109 0 chr4 153058646 153058758 -2571362 + MIR SINE MIR 69 187 -75 9 1752 958 113 17 21 chr4 153059481 153060272 -2569848 + (TGGA)n Simple_repeat Simple_repeat 1 787 0 9 1752 329 294 145 107 chr4 153061341 153061782 -2568338 + MER31B LTR ERV1 2 459 -7 9 1752 3324 55 2 2 chr4 153061857 153062257 -2567863 - MTB LTR MaLR 0 400 1 9 1752 206 357 14 0 chr4 153062666 153062736 -2567384 - L2a LINE L2 0 3426 3356 9 1752 472 328 106 20 chr4 153062822 153063021 -2567099 + MER20 DNA MER1_type 1 216 -3 1 1752 295 289 121 129 chr4 153065193 153065558 -2564562 - MLT1B LTR MaLR 0 390 29 1 1752 477 194 70 141 chr4 153065669 153065825 -2564295 - B1_Mur2 SINE Alu 0 149 5 1 1752 426 330 148 30 chr4 153065832 153066135 -2563985 + ORR1E LTR MaLR 8 346 -13 1 1752 3157 43 27 0 chr4 153066223 153066598 -2563522 + IAPEY_LTR LTR ERVK 1 385 0 1 1752 977 0 9 0 chr4 153067391 153067504 -2562616 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 1752 263 269 50 61 chr4 153068935 153069034 -2561086 - MLT1C LTR MaLR -228 239 142 1 1752 1350 225 61 9 chr4 153069813 153070140 -2559980 - ORR1D2 LTR MaLR 0 370 27 1 1752 326 195 11 0 chr4 153071710 153071797 -2558323 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1752 302 154 19 0 chr4 153071803 153071855 -2558265 + HAL1-3A_ME LINE L1 1975 2027 -831 1 1752 313 164 14 14 chr4 153071856 153071930 -2558190 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1752 627 112 0 0 chr4 153072176 153072274 -2557846 + (TCC)n Simple_repeat Simple_repeat 2 99 0 1 1752 266 217 14 0 chr4 153072290 153072359 -2557761 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1 1752 182 171 24 0 chr4 153072519 153072560 -2557560 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1752 198 0 0 0 chr4 153072578 153072600 -2557520 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 1 1752 475 171 23 114 chr4 153072633 153072765 -2557355 - B1_Mur1 SINE Alu -9 140 21 1 1752 5104 129 15 0 chr4 153073096 153073822 -2556298 - RMER19A LTR ERVK 0 737 1 1 1752 295 286 13 0 chr4 153075072 153075149 -2554971 + MLT1B LTR MaLR 51 128 -262 1 1752 2367 99 75 11 chr4 153076938 153077314 -2552806 + MTC LTR MaLR 1 400 -21 1 1752 1286 220 4 11 chr4 153077309 153077576 -2552544 - MTD LTR MaLR -141 278 14 1 1752 420 383 41 12 chr4 153077678 153077921 -2552199 - MER92B LTR ERV1 -353 283 34 1 1752 269 296 80 53 chr4 153078573 153078723 -2551397 + ORR1D2 LTR MaLR 68 221 -153 1 1752 245 333 11 0 chr4 153079279 153079369 -2550751 + RSINE1 SINE B4 8 98 -67 1 1752 390 115 0 0 chr4 153079369 153079430 -2550690 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1752 305 248 9 0 chr4 153080210 153080319 -2549801 + RMER17A LTR ERVK 353 462 -289 1 1752 214 314 67 75 chr4 153080527 153080661 -2549459 - MIR SINE MIR -71 191 59 1 1752 690 47 0 0 chr4 153081610 153081696 -2548424 + (GGA)n Simple_repeat Simple_repeat 1 86 0 1 1752 337 257 62 35 chr4 153081703 153081816 -2548304 + MIRb SINE MIR 92 207 -61 1 1752 638 277 10 44 chr4 153083134 153083338 -2546782 - HAL1-2a_MD LINE L1 -505 2519 2323 1 1752 519 280 136 30 chr4 153083537 153083857 -2546263 - MTD LTR MaLR -1 378 1 1 1752 260 200 8 25 chr4 153084125 153084243 -2545877 + (CAGAGA)n Simple_repeat Simple_repeat 2 117 0 1 1752 472 150 40 11 chr4 153084232 153084407 -2545713 + GA-rich Low_complexity Low_complexity 1 180 0 1 1752 579 350 87 58 chr4 153084612 153085061 -2545059 - MTE-int LTR MaLR -100 1480 1019 1 1752 283 383 17 28 chr4 153085238 153085418 -2544702 - MTE-int LTR MaLR -1065 515 338 1 1752 278 282 0 0 chr4 153085453 153085531 -2544589 + C-rich Low_complexity Low_complexity 4 81 0 1 1752 297 241 24 0 chr4 153085575 153085658 -2544462 - Lx8 LINE L1 -385 7088 7004 1 1752 309 312 0 0 chr4 153086284 153086361 -2543759 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1752 360 0 0 0 chr4 153086432 153086472 -2543648 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1752 296 64 0 21 chr4 153087382 153087430 -2542690 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1752 262 335 42 57 chr4 153089269 153089462 -2540658 - LTR53 LTR ERVL -44 475 286 1 1752 702 290 89 37 chr4 153089693 153090019 -2540101 - MT2A LTR ERVL 0 533 191 1 1752 263 368 38 0 chr4 153090481 153090587 -2539533 - MIRc SINE MIR -65 203 94 1 1752 183 80 0 0 chr4 153090740 153090765 -2539355 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 1 1753 1284 121 0 4 chr4 153093053 153093301 -2536819 + (TGGA)n Simple_repeat Simple_repeat 1 247 0 1 1753 22 35 0 0 chr4 153093338 153093367 -2536753 + AT_rich Low_complexity Low_complexity 1 29 0 1 1753 408 20 0 0 chr4 153094030 153094079 -2536041 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1753 351 78 65 172 chr4 153095114 153095300 -2534820 + (CATGT)n Simple_repeat Simple_repeat 5 170 0 1 1753 286 283 43 11 chr4 153095455 153095548 -2534572 - MTEa LTR MaLR -278 101 6 1 1753 448 267 44 38 chr4 153095781 153095964 -2534156 + HAL1-2a_MD LINE L1 2342 2525 -499 1 1753 260 235 11 45 chr4 153095964 153096053 -2534067 + (CACCAT)n Simple_repeat Simple_repeat 2 87 0 1 1753 1093 187 99 88 chr4 153097065 153097428 -2532692 - RMER16 LTR ERVK 0 533 1 1 1753 261 135 0 0 chr4 153097675 153097727 -2532393 + (GAAA)n Simple_repeat Simple_repeat 4 55 0 1 1753 721 320 39 39 chr4 153099027 153099075 -2531045 - B4A SINE B4 -35 257 218 1 1753 1224 72 162 0 chr4 153099075 153099095 -2531025 - B2_Mm2 SINE B2 0 195 176 1 1753 315 0 0 0 chr4 153099095 153099130 -2530990 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1753 1224 72 162 0 chr4 153099130 153099276 -2530844 - B2_Mm2 SINE B2 -20 175 3 1 1753 721 320 39 39 chr4 153099276 153099484 -2530636 - B4A SINE B4 -75 217 2 1 1753 442 273 55 103 chr4 153099924 153100144 -2529976 + MTEa LTR MaLR 142 379 0 1 1753 419 253 76 26 chr4 153100340 153100563 -2529557 + MTD LTR MaLR 130 419 0 1 1753 1037 276 116 36 chr4 153100944 153101394 -2528726 + RMER5 LTR ERV1 40 525 -9 1 1753 350 336 16 0 chr4 153103191 153103319 -2526801 + (CATATA)n Simple_repeat Simple_repeat 1 130 0 1 1753 454 179 27 27 chr4 153103324 153103473 -2526647 + (CATA)n Simple_repeat Simple_repeat 4 152 0 1 1753 2453 113 70 18 chr4 153103478 153103865 -2526255 + MTB_Mm LTR MaLR 1 407 0 1 1753 221 253 0 26 chr4 153103894 153103971 -2526149 + (CATA)n Simple_repeat Simple_repeat 4 78 0 1 1753 289 250 53 0 chr4 153104711 153104787 -2525333 + ORR1D1 LTR MaLR 1 80 -299 1 1753 757 162 0 34 chr4 153104828 153105007 -2525113 + G-rich Low_complexity Low_complexity 4 176 0 1 1753 835 280 114 7 chr4 153105608 153105889 -2524231 + ORR1D2 LTR MaLR 5 315 -55 1 1753 256 288 45 9 chr4 153106355 153106467 -2523653 + L1MEa LINE L1 20 135 -5935 1 1753 2219 68 39 0 chr4 153106518 153106825 -2523295 - ORR1A2 LTR MaLR -8 319 1 1 1753 234 62 0 0 chr4 153107487 153107519 -2522601 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 1753 454 304 53 21 chr4 153107554 153107742 -2522378 + ORR1D1 LTR MaLR 31 224 -135 1 1753 259 310 0 12 chr4 153107773 153107858 -2522262 + C-rich Low_complexity Low_complexity 5 88 0 1 1753 294 189 109 22 chr4 153108282 153108374 -2521746 + L1MEf LINE L1 1005 1104 -5138 1 1753 1479 65 16 0 chr4 153108659 153108843 -2521277 - B2_Mm2 SINE B2 -7 188 2 1 1753 1007 80 0 0 chr4 153108867 153109004 -2521116 - MTB LTR MaLR 0 400 264 1 1753 5408 135 76 14 chr4 153109001 153110024 -2520096 - MTB-int LTR MaLR -167 1091 5 1 1753 3213 61 10 5 chr4 153110026 153110424 -2519696 - MTB LTR MaLR 0 400 1 1 1753 497 267 122 22 chr4 153110452 153110632 -2519488 + B3A SINE B2 1 198 0 1 1753 491 279 150 21 chr4 153110969 153111156 -2518964 + B3 SINE B2 1 211 -5 1 1753 1192 256 79 11 chr4 153111175 153111530 -2518590 - MTEa LTR MaLR 0 379 1 1 1753 523 344 88 52 chr4 153111577 153111942 -2518178 + L1MEf LINE L1 2650 3027 -3119 1 1753 467 286 29 29 chr4 153111968 153112105 -2518015 - MTE2b LTR MaLR 0 379 243 1 1753 493 231 96 42 chr4 153112519 153112686 -2517434 + ORR1D1 LTR MaLR 199 374 0 1 1753 249 108 0 0 chr4 153114474 153114511 -2515609 + (CCCTAA)n Simple_repeat Simple_repeat 3 39 0 1 1753 5123 109 53 88 chr4 153114762 153115701 -2514419 + RMER17A2 LTR ERVK 1 906 0 1 1753 2582 139 119 94 chr4 153115703 153116265 -2513855 + RMER4B LTR ERVK 10 585 0 1 1753 3644 46 9 0 chr4 153116679 153117111 -2513009 + RLTR10C LTR ERVK 1 436 0 1 1753 1550 6 6 0 chr4 153117111 153117294 -2512826 + MMERVK10C-int LTR ERVK 1 184 -7397 1 1753 225 225 0 0 chr4 153117294 153117334 -2512786 + RLTR27 LTR ERVK 236 275 -34 1 1753 778 126 0 0 chr4 153117334 153117453 -2512667 + MMERVK10C-int LTR ERVK 225 343 -7238 1 1753 870 148 4 177 chr4 153117451 153117722 -2512398 + MMERVK10C-int LTR ERVK 729 952 -6629 1 1753 615 253 144 67 chr4 153117810 153118182 -2511938 + MMERVK10C-int LTR ERVK 2075 2425 -4819 1 1753 312 155 17 0 chr4 153118182 153118240 -2511880 + MMERVK10C-int LTR ERVK 1721 1779 -5627 1 1753 338 111 0 0 chr4 153118247 153118310 -2511810 + MMERVK10C-int LTR ERVK 1885 1947 -5634 1 1753 44085 9 0 0 chr4 153118316 153123344 -2506776 + MMERVK10C-int LTR ERVK 2552 7581 0 1 1753 3644 46 9 0 chr4 153123344 153123776 -2506344 + RLTR10C LTR ERVK 1 436 0 1 1753 867 278 99 57 chr4 153123915 153124269 -2505851 + ORR1D2 LTR MaLR 1 369 -1 1 1753 2797 160 39 21 chr4 153124525 153124935 -2505185 - RLTR11A2 LTR ERVK 0 527 123 1 1753 3341 36 13 3 chr4 153124935 153125327 -2504793 + MTA_Mm LTR MaLR 1 396 0 1 1753 2797 160 39 21 chr4 153125327 153125434 -2504686 - RLTR11A2 LTR ERVK -405 122 1 1 1753 492 132 19 9 chr4 153126765 153126872 -2503248 + (CATA)n Simple_repeat Simple_repeat 4 111 0 1 1753 329 283 0 6 chr4 153127351 153127532 -2502588 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1753 243 133 0 0 chr4 153128004 153128049 -2502071 + (TCTCCC)n Simple_repeat Simple_repeat 2 46 0 1 1753 256 323 10 29 chr4 153128562 153128579 -2501541 + RMER12 LTR ERVK 749 765 -557 1 1753 414 0 0 0 chr4 153128579 153128625 -2501495 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1753 256 323 10 29 chr4 153128625 153128709 -2501411 + RMER12 LTR ERVK 766 848 -474 1 1753 198 264 26 53 chr4 153129186 153129262 -2500858 - L2b LINE L2 -37 3338 3265 1 1753 410 312 69 33 chr4 153129655 153130000 -2500120 + ORR1E LTR MaLR 4 360 -19 1 1753 234 0 0 0 chr4 153130250 153130276 -2499844 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1753 671 231 7 7 chr4 153130636 153130773 -2499347 + RMER19B LTR ERVK 1 137 -765 1 1753 2587 25 30 124 chr4 153130773 153131176 -2498944 + RLTR10B2 LTR ERVK 1 365 0 1 1753 3635 175 100 17 chr4 153131176 153131872 -2498248 + RMER19B LTR ERVK 133 887 -15 1 1753 1220 21 21 0 chr4 153131914 153132057 -2498063 - B1_Mm SINE Alu 0 147 2 1 1753 330 26 0 0 chr4 153133308 153133347 -2496773 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1753 212 300 108 32 chr4 153133514 153133607 -2496513 + MIRb SINE MIR 160 259 -9 1 1753 21 0 0 0 chr4 153134049 153134070 -2496050 + GC_rich Low_complexity Low_complexity 1 21 0 1 1753 429 281 67 91 chr4 153134618 153134872 -2495248 + L1M4 LINE L1 3776 4023 -2123 1 1753 302 267 0 0 chr4 153134872 153134932 -2495188 + B4A SINE B4 1 60 -232 1 1753 207 0 0 0 chr4 153134952 153134975 -2495145 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1753 750 216 33 70 chr4 153135094 153135308 -2494812 + B3 SINE B2 1 206 -10 2 1753 346 289 23 0 chr4 153136399 153136527 -2493593 + L1MC LINE L1 3315 3445 -2701 2 1753 546 195 59 0 chr4 153136587 153136705 -2493415 + B3 SINE B2 85 209 -7 2 1753 585 265 68 57 chr4 153136765 153136957 -2493163 + B3A SINE B2 10 203 -13 2 1753 383 275 7 0 chr4 153136959 153137101 -2493019 + (CA)n Simple_repeat Simple_repeat 1 143 0 2 1753 1582 296 50 68 chr4 153137101 153138100 -2492020 + L1MA4 LINE L1 3890 4870 -1273 2 1753 1164 259 139 14 chr4 153138179 153138524 -2491596 - MTD LTR MaLR -14 405 18 2 1753 574 286 125 17 chr4 153138550 153138949 -2491171 + L1MA4 LINE L1 4965 5401 -479 2 1753 774 238 19 6 chr4 153139075 153139236 -2490884 + ORR1D2 LTR MaLR 25 187 -183 2 1753 423 288 67 36 chr4 153139244 153139467 -2490653 + L1MA4 LINE L1 5697 5926 -374 2 1753 362 274 5 0 chr4 153139488 153139705 -2490415 + (TG)n Simple_repeat Simple_repeat 1 217 0 2 1753 949 189 112 0 chr4 153139731 153139927 -2490193 - MTD LTR MaLR -25 394 177 2 1753 261 0 0 0 chr4 153139953 153139982 -2490138 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1753 452 197 138 66 chr4 153140247 153140367 -2489753 + RSINE1 SINE B4 3 141 -24 2 1753 264 30 0 0 chr4 153140367 153140400 -2489720 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1753 351 0 0 0 chr4 153140400 153140438 -2489682 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1753 452 197 138 66 chr4 153140438 153140468 -2489652 + RSINE1 SINE B4 142 164 -1 2 1753 760 262 80 33 chr4 153140536 153140812 -2489308 + B4 SINE B4 4 292 0 2 1753 218 160 39 20 chr4 153140817 153140868 -2489252 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1753 311 241 131 12 chr4 153140881 153140965 -2489155 + HAL1-3A_ME LINE L1 1976 2069 -789 2 1753 1235 234 144 29 chr4 153142106 153142480 -2487640 + MTD LTR MaLR 1 417 -2 2 1753 352 333 138 29 chr4 153142611 153142821 -2487299 + MER21B LTR ERV1 582 814 -49 2 1753 395 250 18 12 chr4 153143314 153143484 -2486636 + G-rich Low_complexity Low_complexity 6 176 0 2 1753 329 225 15 23 chr4 153143513 153143645 -2486475 + G-rich Low_complexity Low_complexity 5 135 0 2 1753 191 323 160 10 chr4 153144095 153144195 -2485925 - MIRm SINE MIR -129 147 33 2 1753 802 51 2 2 chr4 153144412 153144528 -2485592 + B1_Mm SINE Alu 1 116 -33 2 1753 26 0 0 0 chr4 153145309 153145335 -2484785 + AT_rich Low_complexity Low_complexity 1 26 0 2 1753 209 263 34 34 chr4 153146102 153146161 -2483959 + MIRb SINE MIR 22 80 -188 2 1753 791 223 43 0 chr4 153146264 153146448 -2483672 + ID_B1 SINE B4 12 203 -21 2 1753 299 274 94 0 chr4 153146350 153146467 -2483653 + B1F SINE Alu 19 146 -3 2 1753 510 316 73 26 chr4 153146575 153146848 -2483272 - B4A SINE B4 -6 286 1 2 1753 467 135 51 39 chr4 153147049 153147157 -2482963 + ORR1B1 LTR MaLR 41 137 -257 2 1753 1807 119 17 27 chr4 153147165 153147466 -2482654 + ORR1A3 LTR MaLR 29 326 0 2 1753 502 241 26 26 chr4 153148440 153148555 -2481565 - B3 SINE B2 0 216 102 2 1753 2036 197 140 86 chr4 153148557 153149129 -2480991 + RMER20B LTR ERVK 1 603 -24 2 1753 628 204 82 13 chr4 153149072 153149231 -2480889 - B3 SINE B2 -46 170 1 2 1753 204 180 3 0 chr4 153149587 153149625 -2480495 + MIR SINE MIR 81 121 -155 2 1753 637 283 124 40 chr4 153149894 153150144 -2479976 - MTD LTR MaLR 0 419 149 2 1753 2592 176 102 51 chr4 153150140 153150908 -2479212 + RMER19B LTR ERVK 25 661 -241 2 1753 291 287 130 14 chr4 153150908 153151046 -2479074 - MTD LTR MaLR -256 163 10 2 1753 739 327 37 94 chr4 153151021 153151423 -2478697 - MTD LTR MaLR -37 382 4 2 1753 293 62 21 0 chr4 153151698 153151746 -2478374 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1753 1824 205 94 5 chr4 153151815 153152197 -2477923 - MTD LTR MaLR -1 418 3 2 1753 327 319 0 28 chr4 153152211 153152353 -2477767 - L1M5 LINE L1 -989 5157 5020 2 1753 1370 77 22 0 chr4 153152877 153153060 -2477060 + B2_Mm1a SINE B2 1 187 -6 2 1753 464 258 0 0 chr4 153153060 153153153 -2476967 + MT2A LTR ERVL 91 183 -350 2 1753 1216 55 0 0 chr4 153153153 153153299 -2476821 + B1_Mus2 SINE Alu 2 147 0 2 1753 1538 295 69 28 chr4 153153414 153154167 -2475953 - Lx8 LINE L1 -69 7404 6621 2 1753 890 82 0 0 chr4 153154175 153154297 -2475823 - ORR1A2 LTR MaLR -205 122 1 2 1753 812 256 44 44 chr4 153154297 153154542 -2475578 + B4A SINE B4 42 286 -6 2 1753 192 77 0 0 chr4 153154543 153154569 -2475551 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 2 1753 185 0 0 39 chr4 153154638 153154664 -2475456 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2 1753 378 0 0 0 chr4 153154746 153154788 -2475332 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1753 288 0 0 0 chr4 153156175 153156207 -2473913 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 2 1753 414 277 108 44 chr4 153156646 153156850 -2473270 - MLT1D LTR MaLR -179 326 110 2 1753 469 267 93 36 chr4 153157095 153157289 -2472831 + B3 SINE B2 1 205 -11 2 1753 881 156 0 11 chr4 153157303 153157485 -2472635 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1753 828 129 5 33 chr4 153157516 153157700 -2472420 + (CATA)n Simple_repeat Simple_repeat 2 180 0 2 1753 1108 224 5 0 chr4 153157719 153157924 -2472196 + B3 SINE B2 1 206 -10 2 1753 323 313 209 29 chr4 153158619 153158925 -2471195 + MLT1C LTR MaLR 102 462 -5 2 1753 777 87 46 6 chr4 153160508 153160681 -2469439 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1753 1707 166 26 37 chr4 153160803 153161153 -2468967 - ORR1B1 LTR MaLR -8 386 41 2 1753 443 286 55 24 chr4 153161357 153161522 -2468598 + MER96 DNA hAT 3 172 -3 2 1753 288 274 69 69 chr4 153163528 153163630 -2466490 + MER20 DNA MER1_type 3 104 -115 2 1753 404 234 62 45 chr4 153163804 153163916 -2466204 + B4A SINE B4 163 276 -16 2 1753 3452 140 77 85 chr4 153164046 153164765 -2465355 - RMER19B LTR ERVK -189 713 1 2 1753 302 62 42 0 chr4 153164765 153164813 -2465307 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 2 1753 1426 268 29 31 chr4 153164828 153165248 -2464872 - MTEa-int LTR MaLR -1161 419 1 2 1753 1036 255 154 9 chr4 153165251 153165576 -2464544 - MTEa LTR MaLR -4 375 4 2 1753 233 213 202 9 chr4 153165706 153165815 -2464305 + L1MC1 LINE L1 6199 6328 -5 2 1753 272 202 121 22 chr4 153165841 153165932 -2464188 + L1M LINE L1 5326 5425 -758 2 1753 513 179 0 0 chr4 153166011 153166134 -2463986 + (TG)n Simple_repeat Simple_repeat 1 123 0 2 1753 429 216 0 0 chr4 153166174 153166313 -2463807 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1753 955 257 14 14 chr4 153167741 153167958 -2462162 - ID_B1 SINE B4 -6 218 2 2 1753 199 243 71 53 chr4 153168905 153169018 -2461102 + MIR SINE MIR 62 176 -100 2 1753 213 205 122 26 chr4 153169302 153169417 -2460703 + (AACTG)n Simple_repeat Simple_repeat 3 128 0 2 1753 343 364 57 6 chr4 153170218 153170395 -2459725 + Lx8 LINE L1 7058 7243 -230 2 1753 250 359 58 0 chr4 153170397 153170500 -2459620 + RMER15 LTR ERVL 382 490 -85 2 1753 363 317 109 64 chr4 153171397 153171663 -2458457 + MLT1C LTR MaLR 1 278 -189 2 1753 951 202 62 24 chr4 153171955 153172125 -2457995 + B3 SINE B2 1 169 -47 2 1753 414 0 0 0 chr4 153172125 153172171 -2457949 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2 1753 951 202 62 24 chr4 153172171 153172208 -2457912 + B3 SINE B2 170 215 -1 2 1753 2627 62 16 0 chr4 153173143 153173465 -2456655 + ORR1A2 LTR MaLR 1 327 0 2 1753 941 145 12 29 chr4 153173735 153173906 -2456214 + B2_Mm2 SINE B2 3 170 -25 2 1753 615 62 0 0 chr4 153173912 153173992 -2456128 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 2 1753 227 303 0 0 chr4 153174408 153174474 -2455646 + B1F SINE Alu 3 68 -81 2 1753 1141 115 458 18 chr4 153174731 153175001 -2455119 + RMER17C LTR ERVK 2 397 -13 2 1753 570 67 0 0 chr4 153175001 153175076 -2455044 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2 1753 1141 115 458 18 chr4 153175076 153175089 -2455031 + RMER17C LTR ERVK 398 410 0 2 1753 519 95 0 0 chr4 153175968 153176042 -2454078 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1753 270 0 0 0 chr4 153176315 153176345 -2453775 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1753 486 229 16 48 chr4 153176359 153176483 -2453637 + PB1D9 SINE Alu 1 120 0 2 1753 2468 98 3 0 chr4 153176498 153176824 -2453296 + ORR1A2 LTR MaLR 1 327 0 2 1753 459 0 0 0 chr4 153177101 153177152 -2452968 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1753 308 103 0 191 chr4 153177533 153177579 -2452541 + HAL1-3A_ME LINE L1 1945 1975 -883 2 1753 231 36 0 0 chr4 153177579 153177607 -2452513 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1753 308 103 0 191 chr4 153177607 153177644 -2452476 + HAL1-3A_ME LINE L1 1976 2012 -846 2 1753 381 273 0 0 chr4 153177644 153177794 -2452326 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1753 288 253 27 0 chr4 153177795 153177870 -2452250 + (CATG)n Simple_repeat Simple_repeat 3 79 0 2 1753 380 287 0 6 chr4 153177882 153178057 -2452063 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1753 215 186 15 92 chr4 153180965 153181030 -2449090 + ID_B1 SINE B4 79 138 -86 2 1753 639 96 11 73 chr4 153181509 153181700 -2448420 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 2 1753 592 84 40 69 chr4 153181731 153182293 -2447827 + (TCTCTG)n Simple_repeat Simple_repeat 1 545 0 2 1753 220 203 21 28 chr4 153182271 153182413 -2447707 + CT-rich Low_complexity Low_complexity 2 142 0 2 1753 295 160 0 26 chr4 153182431 153182508 -2447612 + CT-rich Low_complexity Low_complexity 3 77 0 2 1753 211 277 0 30 chr4 153183722 153183789 -2446331 + MIRm SINE MIR 66 130 -146 2 1753 508 293 18 30 chr4 153183943 153184112 -2446008 - HAL1-2a_MD LINE L1 -519 2505 2339 2 1753 240 336 9 17 chr4 153185295 153185410 -2444710 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 2 1753 390 213 126 11 chr4 153185808 153185903 -2444217 + B1_Mur1 SINE Alu 14 119 -30 2 1753 3242 129 53 116 chr4 153186209 153186957 -2443163 - RMER6A LTR ERVK 0 756 56 2 1753 736 270 136 74 chr4 153187735 153188087 -2442033 - MTEa LTR MaLR -5 374 1 2 1753 636 111 0 0 chr4 153188490 153188607 -2441513 + (TC)n Simple_repeat Simple_repeat 2 118 0 2 1753 2176 71 22 6 chr4 153188618 153188932 -2441188 + ORR1A2 LTR MaLR 1 319 -8 2 1753 279 308 54 14 chr4 153189191 153189339 -2440781 + MLT1A0 LTR MaLR 1 154 -211 2 1753 626 229 53 77 chr4 153189346 153189523 -2440597 + B3A SINE B2 5 182 -34 3 1753 383 75 0 29 chr4 153189523 153189592 -2440528 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 3 1753 589 229 53 77 chr4 153189592 153189622 -2440498 + B3 SINE B2 183 207 -9 3 1753 553 197 24 39 chr4 153189688 153189815 -2440305 + RMER1C Other Other 1118 1242 -100 3 1753 733 242 38 25 chr4 153189960 153190197 -2439923 + L1MB8 LINE L1 5930 6169 -9 3 1753 393 319 142 7 chr4 153191281 153191556 -2438564 + MER89 LTR ERV1 98 409 -150 3 1753 396 0 0 0 chr4 153191633 153191677 -2438443 + (TAGGG)n Simple_repeat Simple_repeat 1 44 0 3 1753 2111 146 135 28 chr4 153191915 153192344 -2437776 + RMER19B LTR ERVK 3 477 -425 3 1753 681 13 0 0 chr4 153192349 153192427 -2437693 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 1753 477 0 0 0 chr4 153192558 153192611 -2437509 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1753 212 255 0 0 chr4 153192626 153192673 -2437447 + T-rich Low_complexity Low_complexity 5 51 0 3 1753 233 333 0 0 chr4 153192673 153192751 -2437369 - RMER15 LTR ERVL -105 470 393 3 1753 210 284 108 0 chr4 153194396 153194470 -2435650 + ID4_ SINE ID 2 83 0 3 1753 234 150 0 0 chr4 153195167 153195207 -2434913 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1753 441 0 0 0 chr4 153195743 153195792 -2434328 + (CAGGA)n Simple_repeat Simple_repeat 5 53 0 3 1753 228 238 0 0 chr4 153195931 153195973 -2434147 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 3 1753 1552 232 95 0 chr4 153196373 153196743 -2433377 + MTD LTR MaLR 1 405 -14 3 1753 381 58 0 0 chr4 153197029 153197081 -2433039 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1753 290 266 13 0 chr4 153197100 153197179 -2432941 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1753 524 172 44 21 chr4 153197198 153197627 -2432493 + (TG)n Simple_repeat Simple_repeat 1 438 0 3 1753 814 234 47 11 chr4 153197628 153197818 -2432302 - B4A SINE B4 -1 291 95 3 1753 560 211 35 3 chr4 153197822 153197962 -2432158 - ORR1D1 LTR MaLR -2 372 176 3 1753 234 256 0 0 chr4 153198009 153198087 -2432033 + CT-rich Low_complexity Low_complexity 2 79 0 3 1753 207 194 0 0 chr4 153198648 153198684 -2431436 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 3 1753 180 236 17 52 chr4 153199066 153199124 -2430996 - MIR3 SINE MIR -32 176 121 3 1753 1273 336 90 31 chr4 153199389 153200200 -2429920 + Charlie1a DNA MER1_type 297 1155 -300 3 1753 793 171 117 22 chr4 153200799 153200979 -2429141 - RLTR24 LTR ERV1 -27 502 306 3 1753 38 22 0 0 chr4 153201027 153201072 -2429048 + AT_rich Low_complexity Low_complexity 1 45 0 3 1753 305 162 235 0 chr4 153201072 153201140 -2428980 - RLTR24 LTR ERV1 -445 84 1 3 1753 544 248 117 33 chr4 153201436 153201680 -2428440 + MTD LTR MaLR 41 301 -120 3 1753 351 229 82 33 chr4 153201715 153201837 -2428283 + MTD LTR MaLR 252 379 0 3 1753 228 250 36 0 chr4 153201837 153201885 -2428235 - PB1D9 SINE Alu -18 131 63 3 1753 269 179 93 72 chr4 153202013 153202126 -2427994 - MLT1J LTR MaLR -333 179 36 3 1753 374 0 22 0 chr4 153202802 153202848 -2427272 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1753 315 182 0 0 chr4 153204803 153204860 -2425260 - PB1D7 SINE Alu -2 118 59 3 1753 2544 112 75 101 chr4 153205072 153205567 -2424553 - RLTR45 LTR ERVK 0 482 1 3 1753 269 295 77 55 chr4 153206388 153206571 -2423549 + MLT1C LTR MaLR 201 387 -80 3 1753 184 263 0 0 chr4 153207483 153207521 -2422599 + MIRb SINE MIR 34 71 -197 3 1753 225 403 45 70 chr4 153208329 153208660 -2421460 - MLT1I LTR MaLR -28 383 61 3 1753 443 335 70 112 chr4 153208673 153209073 -2421047 + MLT1C LTR MaLR 1 460 -7 3 1753 270 143 42 28 chr4 153210634 153210706 -2419414 + CT-rich Low_complexity Low_complexity 6 78 0 3 1753 372 286 0 0 chr4 153210707 153210805 -2419315 - BC1_Mm scRNA scRNA -48 104 7 3 1753 333 0 0 0 chr4 153212696 153212733 -2417387 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1753 262 291 72 9 chr4 153213453 153213564 -2416556 + L1MEc LINE L1 109 226 -6174 3 1753 943 208 19 6 chr4 153214102 153214308 -2415812 - B3 SINE B2 0 216 13 3 1753 297 0 0 0 chr4 153214532 153214565 -2415555 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1753 201 175 0 0 chr4 153214745 153214785 -2415335 + C-rich Low_complexity Low_complexity 1 40 0 3 1753 1262 98 78 82 chr4 153215833 153216077 -2414043 + ORR1A4 LTR MaLR 1 243 -86 3 1753 201 39 0 0 chr4 153216077 153216103 -2414017 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 3 1753 474 277 0 54 chr4 153216105 153216254 -2413866 - RSINE1 SINE B4 -22 143 3 3 1753 1512 219 76 21 chr4 153218777 153219159 -2410961 + MTD LTR MaLR 3 405 -14 3 1753 735 237 40 55 chr4 153219229 153219430 -2410690 - B3A SINE B2 0 198 1 3 1753 630 39 0 0 chr4 153221520 153221597 -2408523 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1753 371 211 11 0 chr4 153221599 153221694 -2408426 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 1753 207 200 0 22 chr4 153221699 153221745 -2408375 + (TCTCTG)n Simple_repeat Simple_repeat 3 47 0 3 1753 279 0 0 0 chr4 153221796 153221827 -2408293 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1753 315 292 12 25 chr4 153221842 153221991 -2408129 + CT-rich Low_complexity Low_complexity 1 147 0 3 1753 624 251 0 67 chr4 153222492 153222671 -2407449 + B3A SINE B2 32 198 0 3 1753 328 318 23 35 chr4 153222671 153222824 -2407296 + L1MA4 LINE L1 5590 5775 -516 3 1753 393 242 31 31 chr4 153222826 153222924 -2407196 + ID_B1 SINE B4 126 223 -1 3 219 790 180 0 7 chr4 153222932 153223202 -2406918 + (CA)n Simple_repeat Simple_repeat 1 268 0 3 1754 377 227 11 0 chr4 153223203 153223291 -2406829 + L1MA4 LINE L1 5783 5871 -429 3 1754 186 395 9 9 chr4 153223778 153223888 -2406232 + MIR SINE MIR 28 137 -125 3 1754 34 0 0 0 chr4 153224630 153224664 -2405456 + AT_rich Low_complexity Low_complexity 1 34 0 3 1754 180 0 0 0 chr4 153224848 153224868 -2405252 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 3 1754 381 254 47 80 chr4 153225078 153225228 -2404892 - RMER30 DNA MER1_type -56 146 2 3 1754 802 288 81 15 chr4 153225686 153225957 -2404163 - MTEa LTR MaLR -52 327 39 3 1754 253 309 0 49 chr4 153225869 153225971 -2404149 - MT2A LTR ERVL -411 122 26 3 1754 344 272 54 0 chr4 153226334 153226426 -2403694 + PB1 SINE Alu 2 98 -29 3 1754 983 232 14 0 chr4 153226960 153227171 -2402949 - B3 SINE B2 -2 214 1 3 1754 441 0 0 0 chr4 153227600 153227649 -2402471 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1754 562 291 19 58 chr4 153227649 153227857 -2402263 - B4A SINE B4 -76 216 17 3 1754 1044 81 119 17 chr4 153229429 153229606 -2400514 + B2_Mm2 SINE B2 1 195 0 3 1754 565 285 0 20 chr4 153230472 153230595 -2399525 + ORR1E-int LTR MaLR 1408 1527 -53 3 1754 391 264 369 16 chr4 153230595 153230845 -2399275 + ORR1E LTR MaLR 1 339 -31 3 1754 917 141 35 17 chr4 153230845 153231018 -2399102 - MTD LTR MaLR 0 419 244 3 1754 689 282 25 13 chr4 153231019 153231224 -2398896 + MTD-int LTR MaLR 673 858 -400 3 1754 839 136 0 0 chr4 153231233 153231365 -2398755 + URR1A DNA MER1_type 50 181 -45 3 1754 594 259 167 58 chr4 153231364 153231689 -2398431 + MTD-int LTR MaLR 857 1224 -34 3 1754 492 62 0 0 chr4 153231689 153231753 -2398367 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1754 594 259 167 58 chr4 153231753 153231787 -2398333 + MTD-int LTR MaLR 1225 1255 -3 3 1754 1684 239 15 10 chr4 153231787 153232183 -2397937 + MTD LTR MaLR 10 407 -12 3 1754 2479 71 3 0 chr4 153233161 153233487 -2396633 - ORR1A2 LTR MaLR 0 327 1 3 1754 679 221 7 7 chr4 153236208 153236349 -2393771 + MTD LTR MaLR 1 141 -278 3 1754 671 209 111 0 chr4 153236741 153236913 -2393207 + MTD LTR MaLR 228 418 -1 3 1754 433 264 77 8 chr4 153236977 153237107 -2393013 + ID_B1 SINE B4 84 222 -2 3 1754 661 203 10 26 chr4 153237145 153237453 -2392667 + GA-rich Low_complexity Low_complexity 1 302 0 3 1754 932 77 38 19 chr4 153238490 153239027 -2391093 + (TAGA)n Simple_repeat Simple_repeat 1 547 0 3 1754 225 296 94 17 chr4 153239144 153239261 -2390859 - MLT1A LTR MaLR -84 290 165 3 1754 3207 48 20 0 chr4 153239468 153239867 -2390253 - MTB_Mm LTR MaLR 0 407 1 3 1754 198 0 0 0 chr4 153240578 153240600 -2389520 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1754 492 303 21 0 chr4 153241705 153241850 -2388270 + MLT2D LTR ERVL 111 258 -156 3 1754 278 292 27 14 chr4 153242656 153242802 -2387318 + (TG)n Simple_repeat Simple_repeat 1 148 0 3 1754 615 278 5 64 chr4 153242849 153243053 -2387067 - B3A SINE B2 -5 193 2 3 1754 2155 191 76 19 chr4 153243532 153244017 -2386103 + RMER20A LTR ERVK 3 515 -1 3 1754 213 318 64 18 chr4 153244017 153244126 -2385994 + MIR SINE MIR 82 195 -67 3 1754 463 262 56 76 chr4 153244613 153244650 -2385470 - B2_Mm2 SINE B2 0 195 158 3 1754 309 51 0 0 chr4 153244650 153244689 -2385431 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1754 517 262 56 76 chr4 153244689 153244849 -2385271 - B3A SINE B2 -38 160 2 3 1754 367 299 50 31 chr4 153246174 153246333 -2383787 + MTD LTR MaLR 11 172 -247 3 1754 411 208 109 0 chr4 153246334 153246463 -2383657 - RMER19C LTR ERVK -374 237 1 3 1754 315 189 13 63 chr4 153246463 153246513 -2383607 + MTD LTR MaLR 331 376 -3 3 1754 249 293 61 0 chr4 153246610 153246692 -2383428 + MLT1A LTR MaLR 259 345 -29 3 1754 429 250 44 83 chr4 153246932 153247108 -2383012 + ID_B1 SINE B4 73 245 -47 3 1754 545 100 9 43 chr4 153247323 153247438 -2382682 + CT-rich Low_complexity Low_complexity 4 114 0 3 1754 261 0 0 0 chr4 153247625 153247654 -2382466 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1754 463 233 173 49 chr4 153248002 153248064 -2382056 - B3A SINE B2 0 216 152 3 1754 303 28 0 0 chr4 153248064 153248100 -2382020 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1754 463 259 169 24 chr4 153248100 153248222 -2381898 - B3A SINE B2 -47 151 10 3 1754 419 212 24 0 chr4 153248895 153248980 -2381140 + B4A SINE B4 10 96 -196 3 1754 937 286 122 38 chr4 153248983 153249332 -2380788 + Lx4B LINE L1 6642 7023 -35 3 1754 2304 69 31 0 chr4 153249332 153249649 -2380471 + ORR1A2 LTR MaLR 1 327 0 3 1754 937 286 122 38 chr4 153249649 153249669 -2380451 + Lx4B LINE L1 7024 7042 -16 3 1754 325 268 0 85 chr4 153249723 153249792 -2380328 + B4A SINE B4 141 209 -83 3 1754 1858 213 22 7 chr4 153249792 153250203 -2379917 - MTD LTR MaLR 0 419 3 3 1754 325 268 0 85 chr4 153250203 153250227 -2379893 + B4A SINE B4 210 226 -66 3 1754 790 277 38 14 chr4 153250230 153250402 -2379718 + B3 SINE B2 1 180 -36 3 1754 423 56 0 0 chr4 153250402 153250456 -2379664 + (CATA)n Simple_repeat Simple_repeat 1 54 0 4 1754 790 277 38 14 chr4 153250456 153250492 -2379628 + B3 SINE B2 181 214 -2 3 1754 943 222 78 13 chr4 153250976 153251289 -2378831 + RMER1B Other Other 45 415 -651 4 1754 1653 199 265 25 chr4 153251317 153251773 -2378347 + RMER19B LTR ERVK 308 883 -19 4 1754 1216 98 22 0 chr4 153251773 153251957 -2378163 + B2_Mm2 SINE B2 1 188 -7 4 1754 1653 199 265 25 chr4 153251957 153251980 -2378140 + RMER19B LTR ERVK 884 902 0 4 1754 30886 128 35 16 chr4 153251989 153257086 -2373034 + MurERV4_19-int LTR ERVK 27 5218 -562 4 1754 249 188 0 20 chr4 153257091 153257140 -2372980 + RMER19B LTR ERVK 855 902 0 4 1754 863 275 141 42 chr4 153257142 153257545 -2372575 + RMER1A Other Other 1 417 -613 4 1754 216 0 0 0 chr4 153258620 153258644 -2371476 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1754 419 274 32 0 chr4 153258985 153259109 -2371011 - MTD LTR MaLR -240 179 52 4 1754 347 262 77 10 chr4 153261139 153261243 -2368877 + PB1D7 SINE Alu 3 113 -7 4 1754 1210 244 104 40 chr4 153261762 153262150 -2367970 - MTD LTR MaLR -14 405 8 4 1754 686 220 51 17 chr4 153262387 153262563 -2367557 - Kanga1b DNA Tc2 -49 730 549 4 1754 234 171 0 0 chr4 153262995 153263036 -2367084 + PB1D7 SINE Alu 80 120 0 4 1754 2452 156 22 17 chr4 153263050 153263513 -2366607 + RMER4A LTR ERVK 2 466 0 4 1754 242 56 28 0 chr4 153263514 153263550 -2366570 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 4 1754 948 160 41 0 chr4 153263550 153263719 -2366401 - MTD LTR MaLR -131 288 113 4 1754 1045 60 0 0 chr4 153263722 153263856 -2366264 + B2_Mm2 SINE B2 2 135 -60 4 1754 561 15 0 0 chr4 153263930 153263996 -2366124 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 4 1754 238 62 0 0 chr4 153266027 153266059 -2364061 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1754 399 68 0 0 chr4 153266059 153266118 -2364002 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1754 551 211 150 66 chr4 153266159 153266326 -2363794 - B3A SINE B2 -16 182 2 4 1754 387 0 0 0 chr4 153266386 153266429 -2363691 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1754 450 0 0 0 chr4 153266429 153266478 -2363642 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1754 234 74 0 53 chr4 153266601 153266658 -2363462 + (TTTTG)n Simple_repeat Simple_repeat 5 58 0 4 1754 27 62 0 0 chr4 153266989 153267037 -2363083 + AT_rich Low_complexity Low_complexity 1 48 0 4 1754 2091 200 82 51 chr4 153267289 153267869 -2362251 + RMER19B LTR ERVK 1 902 0 4 1754 808 217 0 0 chr4 153267966 153268123 -2361997 + (TCTCTG)n Simple_repeat Simple_repeat 3 159 0 4 1754 3164 52 2 12 chr4 153269384 153269792 -2360328 + MTB_Mm LTR MaLR 4 407 0 4 1754 1050 29 72 7 chr4 153269854 153269992 -2360128 + B1_Mm SINE Alu 1 147 0 4 1754 295 113 14 14 chr4 153269997 153270069 -2360051 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 4 1754 495 216 13 9 chr4 153270511 153270745 -2359375 + (TG)n Simple_repeat Simple_repeat 1 235 0 4 1754 840 146 23 12 chr4 153270780 153271042 -2359078 + (TG)n Simple_repeat Simple_repeat 1 265 0 4 1754 1179 102 0 0 chr4 153271541 153271718 -2358402 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 4 1754 500 185 9 0 chr4 153271734 153271842 -2358278 + (TGGA)n Simple_repeat Simple_repeat 4 112 0 4 1754 219 189 0 0 chr4 153271913 153271966 -2358154 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 4 1754 2757 98 2 5 chr4 153272415 153272816 -2357304 - MTB LTR MaLR 0 400 1 4 1754 450 0 0 0 chr4 153273138 153273188 -2356932 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1754 535 268 14 21 chr4 153273693 153273838 -2356282 - ID_B1 SINE B4 -80 144 1 4 1754 306 245 63 0 chr4 153274736 153274850 -2355270 + L2b LINE L2 2953 3076 -343 4 1754 3893 139 99 82 chr4 153274857 153275732 -2354388 + RMER19B LTR ERVK 1 890 -12 4 1754 310 42 0 40 chr4 153275831 153275881 -2354239 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 4 1754 789 279 23 53 chr4 153275936 153275980 -2354140 + B4 SINE B4 36 80 -212 4 1754 221 0 0 33 chr4 153275980 153276010 -2354110 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1754 789 279 23 53 chr4 153276010 153276230 -2353890 + B4 SINE B4 81 292 0 4 1754 468 0 0 0 chr4 153276707 153276759 -2353361 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1754 428 256 0 16 chr4 153276859 153277042 -2353078 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1754 536 240 0 6 chr4 153277056 153277236 -2352884 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1754 243 275 93 42 chr4 153277897 153278082 -2352038 + MIRc SINE MIR 4 196 -72 4 1754 502 234 13 0 chr4 153278532 153278653 -2351467 + B4 SINE B4 119 243 -49 4 1754 723 224 80 35 chr4 153278655 153278854 -2351266 + B3 SINE B2 3 210 -6 4 1754 351 0 0 0 chr4 153279761 153279800 -2350320 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1754 1877 206 78 88 chr4 153280098 153280678 -2349442 - RLTR20B3 LTR ERVK -3 574 1 4 1754 210 37 0 0 chr4 153280883 153280910 -2349210 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1754 251 383 60 28 chr4 153282042 153282292 -2347828 + LTR16E2 LTR ERVL 281 538 -30 4 1754 254 300 50 62 chr4 153283401 153283561 -2346559 - MLT1B LTR MaLR -133 257 100 4 1754 421 331 52 65 chr4 153283562 153283869 -2346251 - ORR1E LTR MaLR 0 359 57 4 1754 1862 176 47 22 chr4 153284310 153284480 -2345640 + ORR1D1 LTR MaLR 1 167 -207 4 1754 2506 52 3 58 chr4 153284480 153284826 -2345294 - ORR1A2 LTR MaLR 0 327 1 4 1754 1862 176 47 22 chr4 153284826 153285020 -2345100 + ORR1D1 LTR MaLR 168 374 0 4 1754 312 362 130 19 chr4 153285102 153285426 -2344694 + Charlie4a DNA MER1_type 39 398 -110 4 1754 620 335 42 33 chr4 153285490 153285731 -2344389 - B4A SINE B4 -6 286 44 4 1754 398 329 41 14 chr4 153285745 153285890 -2344230 + MTD LTR MaLR 13 161 -258 4 1754 292 338 29 119 chr4 153285953 153286265 -2343855 + ORR1E LTR MaLR 61 344 -15 4 1754 338 219 132 12 chr4 153286382 153286465 -2343655 + RSINE1 SINE B4 2 94 -71 4 1754 2384 77 12 6 chr4 153288276 153288601 -2341519 - ORR1A2 LTR MaLR 0 327 1 4 1754 2157 72 42 0 chr4 153289554 153289860 -2340260 + ORR1A2 LTR MaLR 1 319 -8 4 1754 552 291 155 21 chr4 153289865 153290104 -2340016 - MTE2a LTR MaLR -74 305 35 4 1754 330 269 143 37 chr4 153291101 153291290 -2338830 - L1MC1 LINE L1 -6 6327 6119 4 1754 183 204 0 0 chr4 153291302 153291346 -2338774 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1754 573 239 0 0 chr4 153291366 153291546 -2338574 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1754 390 286 0 0 chr4 153291557 153291728 -2338392 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 1754 535 242 6 6 chr4 153291757 153291936 -2338184 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1754 845 210 0 79 chr4 153293205 153293407 -2336713 - B3A SINE B2 -10 188 3 4 1754 206 0 69 0 chr4 153293418 153293447 -2336673 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4 1754 266 250 38 0 chr4 153293499 153293579 -2336541 - B4A SINE B4 -14 278 196 4 1754 263 233 122 160 chr4 153293681 153294075 -2336045 - ZP3AR Satellite Satellite -8 378 1 4 1754 670 373 9 26 chr4 153294205 153294436 -2335684 - B4A SINE B4 -65 227 1 4 1754 441 211 29 40 chr4 153295140 153295468 -2334652 + GA-rich Low_complexity Low_complexity 1 324 0 4 1754 561 68 0 0 chr4 153295468 153295542 -2334578 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 4 1754 386 326 6 33 chr4 153295542 153295617 -2334503 + G-rich Low_complexity Low_complexity 105 176 0 4 1754 930 125 0 0 chr4 153296180 153296356 -2333764 + (TC)n Simple_repeat Simple_repeat 1 176 0 4 1754 497 306 63 16 chr4 153296848 153297037 -2333083 - B3A SINE B2 0 198 1 4 1754 429 20 0 0 chr4 153297281 153297331 -2332789 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1754 216 328 57 32 chr4 153297841 153297964 -2332156 + MIRb SINE MIR 122 247 -21 4 1754 648 279 216 27 chr4 153298006 153298595 -2331525 + L1MEc LINE L1 56 755 -5645 4 1754 394 318 75 44 chr4 153298704 153298931 -2331189 + B4A SINE B4 1 234 -58 4 1754 672 208 0 0 chr4 153299293 153299539 -2330581 + (TG)n Simple_repeat Simple_repeat 1 246 0 4 1754 347 214 56 0 chr4 153299552 153299641 -2330479 - MLT1C LTR MaLR -332 135 42 4 1754 375 284 83 75 chr4 153300707 153300935 -2329185 + MLT2B1 LTR ERVL 1 230 -290 4 1754 418 252 35 0 chr4 153300944 153301057 -2329063 + MLT2B1 LTR ERVL 381 506 -61 4 1754 395 175 34 34 chr4 153301057 153301234 -2328886 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 4 1754 237 139 0 0 chr4 153301250 153301293 -2328827 + (CATA)n Simple_repeat Simple_repeat 3 45 0 4 1754 925 134 0 22 chr4 153301305 153301488 -2328632 + (CATA)n Simple_repeat Simple_repeat 2 180 0 4 1754 1399 172 197 0 chr4 153301490 153301651 -2328469 + ORR1C2 LTR MaLR 2 174 -210 4 1754 453 36 0 0 chr4 153301651 153301706 -2328414 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1754 1399 172 197 0 chr4 153301706 153301864 -2328256 + ORR1C2 LTR MaLR 175 383 -1 4 1754 319 211 10 10 chr4 153301882 153301978 -2328142 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 4 1754 547 252 57 19 chr4 153301978 153302136 -2327984 + RSINE1 SINE B4 2 165 0 4 1754 227 341 37 47 chr4 153302136 153302169 -2327951 + B2_Mm2 SINE B2 1 189 -6 4 1754 809 181 42 150 chr4 153302290 153302530 -2327590 + B3 SINE B2 3 216 0 4 1754 1067 88 0 13 chr4 153302543 153302692 -2327428 + B1_Mus1 SINE Alu 1 147 -1 4 1754 971 254 25 54 chr4 153302737 153303091 -2327029 + L1MA6 LINE L1 5931 6274 -26 4 1754 388 257 88 27 chr4 153303104 153303252 -2326868 + MER2 DNA MER2_type 55 211 -134 4 1754 242 261 0 0 chr4 153303280 153303345 -2326775 + MER2 DNA MER2_type 157 221 -124 4 1754 283 292 0 0 chr4 153303418 153303490 -2326630 + ID4 SINE ID 2 73 -10 4 1754 242 332 107 54 chr4 153305969 153306211 -2323909 - MLT1D LTR MaLR -250 255 1 4 1754 1115 227 50 50 chr4 153306378 153306819 -2323301 + BGLII_B LTR ERVK 1 433 -259 4 1754 700 232 65 22 chr4 153306927 153307112 -2323008 - MTEa LTR MaLR -10 369 177 4 1754 232 339 74 33 chr4 153307200 153307322 -2322798 + MLT1A LTR MaLR 21 147 -227 4 1754 1646 199 80 19 chr4 153307435 153307808 -2322312 - MTD LTR MaLR -14 405 10 4 1754 507 221 0 0 chr4 153307840 153307944 -2322176 + PB1D10 SINE Alu 12 115 -2 4 1754 281 241 60 0 chr4 153307961 153308044 -2322076 + MLT1A LTR MaLR 274 361 -13 4 1754 342 207 48 24 chr4 153308263 153308347 -2321773 + B4 SINE B4 1 86 -206 4 1754 228 227 0 0 chr4 153308607 153308695 -2321425 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1754 431 308 10 0 chr4 153308695 153308798 -2321322 - B4 SINE B4 0 292 189 5 1754 1028 146 22 200 chr4 153308798 153309073 -2321047 + RMER19B LTR ERVK 2 227 -675 5 1754 570 309 45 6 chr4 153309170 153309349 -2320771 - B4 SINE B4 -105 187 2 5 1754 277 240 29 110 chr4 153310819 153310955 -2319165 + MLT1A LTR MaLR 462 586 -9 4 1754 246 388 8 30 chr4 153310976 153311109 -2319011 - MIRb SINE MIR -128 140 11 5 1754 433 317 83 11 chr4 153311195 153311454 -2318666 - Kanga1 DNA Tc2 -152 1593 1312 5 1754 4011 93 10 22 chr4 153311951 153312475 -2317645 + MT2B2 LTR ERVL 1 528 -56 5 1754 1419 53 21 5 chr4 153312475 153312664 -2317456 + B2_Mm2 SINE B2 2 193 -2 5 1754 4011 93 10 22 chr4 153312664 153312730 -2317390 + MT2B2 LTR ERVL 529 584 0 5 1754 22 70 0 0 chr4 153314922 153314965 -2315155 + AT_rich Low_complexity Low_complexity 1 43 0 5 1754 525 254 0 0 chr4 153315253 153315500 -2314620 + (CAGCT)n Simple_repeat Simple_repeat 1 247 0 5 1754 36 0 0 0 chr4 153318785 153318821 -2311299 + AT_rich Low_complexity Low_complexity 1 36 0 5 1754 279 309 53 53 chr4 153319347 153319535 -2310585 + MER77 LTR ERVL 410 597 -10 5 1754 252 0 0 0 chr4 153319745 153319773 -2310347 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1754 281 26 0 26 chr4 153320846 153320885 -2309235 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1754 472 236 116 69 chr4 153320949 153321122 -2308998 - B3A SINE B2 -16 182 2 5 1754 379 264 63 8 chr4 153321124 153321250 -2308870 - B1F SINE Alu -16 133 1 5 1754 668 184 63 44 chr4 153323112 153323131 -2306989 - RSINE1 SINE B4 0 165 148 5 1754 252 0 0 0 chr4 153323131 153323159 -2306961 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1754 668 184 63 44 chr4 153323159 153323298 -2306822 - RSINE1 SINE B4 -18 147 4 5 1754 342 260 114 40 chr4 153324621 153324797 -2305323 + RLTR15 LTR ERVK 36 224 -135 5 1754 470 260 32 47 chr4 153324880 153325070 -2305050 + RLTR15 LTR ERVK 161 347 -12 5 1754 448 240 93 33 chr4 153325942 153326093 -2304027 - Lx6 LINE L1 -26 7434 7275 5 1754 576 214 24 0 chr4 153326313 153326439 -2303681 - B1_Mur1 SINE Alu -19 130 2 5 1754 433 272 54 74 chr4 153326592 153326850 -2303270 + RLTR15 LTR ERVK 86 338 -21 5 1754 2232 136 72 17 chr4 153326926 153327344 -2302776 - BGLII_B LTR ERVK 0 441 1 5 1754 790 244 50 41 chr4 153327358 153327678 -2302442 - RLTR15 LTR ERVK -36 323 1 5 1754 234 0 0 0 chr4 153328272 153328298 -2301822 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1754 1162 48 7 0 chr4 153328298 153328443 -2301677 + B1_Mus1 SINE Alu 2 147 -1 5 1754 2262 98 6 0 chr4 153328574 153328899 -2301221 - ORR1A2 LTR MaLR 0 327 1 5 1754 689 234 23 6 chr4 153329408 153329584 -2300536 + B3 SINE B2 33 211 -5 5 1754 1496 172 23 70 chr4 153330438 153330868 -2299252 - RMER17C LTR ERVK 0 410 1 5 1754 255 209 65 21 chr4 153332389 153332482 -2297638 - L1M4b LINE L1 -4986 2348 2277 5 1754 304 191 189 11 chr4 153332633 153332728 -2297392 - L1M4b LINE L1 -5357 1977 1866 5 1754 279 200 18 0 chr4 153332738 153332793 -2297327 + B1F1 SINE Alu 65 120 -29 5 1754 269 354 35 0 chr4 153332806 153332919 -2297201 + PB1D10 SINE Alu 1 117 0 5 1754 478 281 32 25 chr4 153332961 153333118 -2297002 + ID_B1 SINE B4 65 222 -2 5 1754 1002 101 65 0 chr4 153333315 153333453 -2296667 + B1_Mus1 SINE Alu 2 148 0 5 1754 406 318 70 0 chr4 153333555 153333684 -2296436 - RSINE1 SINE B4 -16 149 12 5 1754 192 77 0 0 chr4 153335257 153335283 -2294837 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1754 281 293 9 83 chr4 153336165 153336273 -2293847 - B3A SINE B2 -82 116 17 5 1754 258 160 0 0 chr4 153336331 153336381 -2293739 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1754 390 299 60 0 chr4 153337039 153337156 -2292964 + RSINE1 SINE B4 6 129 -36 5 1754 429 247 126 7 chr4 153338065 153338216 -2291904 + B3 SINE B2 1 169 -47 5 1754 237 119 0 0 chr4 153338219 153338261 -2291859 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1754 708 151 0 48 chr4 153338656 153338781 -2291339 + PB1D9 SINE Alu 2 120 0 5 1754 409 153 42 0 chr4 153338914 153338986 -2291134 + PB1D10 SINE Alu 2 76 -41 5 1754 261 200 22 111 chr4 153338915 153339005 -2291115 + MT2B2 LTR ERVL 167 248 -336 5 1754 227 293 0 0 chr4 153339185 153339243 -2290877 - L1MC LINE L1 -2135 5747 5690 5 1754 337 131 49 0 chr4 153339892 153339953 -2290167 + MTC LTR MaLR 12 75 -346 5 1754 301 298 95 17 chr4 153340589 153340705 -2289415 - MLT1B LTR MaLR -265 125 1 5 1754 245 251 49 0 chr4 153342096 153342259 -2287861 + (AGCTG)n Simple_repeat Simple_repeat 1 171 0 5 1754 220 130 43 0 chr4 153343422 153343468 -2286652 + B1F2 SINE Alu 12 59 -90 5 1754 314 220 43 21 chr4 153343478 153343571 -2286549 + B4A SINE B4 3 97 -195 5 1754 633 105 35 9 chr4 153343607 153343722 -2286398 + B3 SINE B2 88 205 -11 5 1754 749 285 138 0 chr4 153345839 153346085 -2284035 - B4A SINE B4 -8 284 5 5 1754 383 262 37 0 chr4 153346089 153346196 -2283924 + MER2 DNA MER2_type 114 224 -121 5 1754 377 272 67 50 chr4 153346197 153346258 -2283862 + B4 SINE B4 143 203 -89 5 1754 1238 64 122 0 chr4 153346258 153346430 -2283690 - B2_Mm1t SINE B2 0 193 1 5 1754 377 272 67 50 chr4 153346430 153346488 -2283632 + B4 SINE B4 204 264 -28 5 1754 587 168 28 0 chr4 153346488 153346631 -2283489 + CT-rich Low_complexity Low_complexity 1 147 0 5 1754 390 259 143 19 chr4 153347439 153347600 -2282520 + L1MD LINE L1 3736 3916 -2230 5 1754 347 289 0 0 chr4 153347700 153347790 -2282330 + ID_B1 SINE B4 81 170 -54 5 1754 258 290 60 0 chr4 153347701 153347801 -2282319 + PB1D9 SINE Alu 1 106 -14 5 1754 434 307 55 6 chr4 153348013 153348177 -2281943 + L1MD LINE L1 5308 5479 -763 5 1754 582 28 0 0 chr4 153348248 153348320 -2281800 + (CCCTG)n Simple_repeat Simple_repeat 3 74 0 5 1754 1323 46 0 0 chr4 153348320 153348494 -2281626 + (CACAG)n Simple_repeat Simple_repeat 3 177 0 5 1754 253 82 41 0 chr4 153350367 153350416 -2279704 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1754 469 175 229 16 chr4 153350416 153350538 -2279582 - B1_Mur2 SINE Alu 0 149 2 5 1754 872 177 7 26 chr4 153350619 153350770 -2279350 + B1_Mur1 SINE Alu 1 148 -1 5 1754 365 319 148 34 chr4 153351530 153351854 -2278266 - MLT1K LTR MaLR -72 523 163 5 1754 267 261 14 0 chr4 153352615 153352684 -2277436 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 219 454 262 90 65 chr4 153354124 153354279 -2275841 - RSINE1 SINE B4 -2 163 5 5 1755 489 151 0 0 chr4 153354557 153354643 -2275477 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1755 319 141 55 27 chr4 153356456 153356529 -2273591 + ID4_ SINE ID 3 77 -6 5 1755 1521 54 0 21 chr4 153357253 153357441 -2272679 - B2_Mm1a SINE B2 -9 184 1 5 1755 260 317 109 0 chr4 153361385 153361486 -2268634 + B1F1 SINE Alu 33 144 -5 5 1755 271 330 20 20 chr4 153361604 153361703 -2268417 - MLT1L LTR MaLR -87 523 425 5 1755 231 211 15 22 chr4 153362843 153362979 -2267141 + (TCTG)n Simple_repeat Simple_repeat 4 138 0 5 1755 513 255 42 21 chr4 153364194 153364338 -2265782 - B1F1 SINE Alu -2 147 1 5 1755 494 309 79 47 chr4 153364369 153364431 -2265689 + B4A SINE B4 5 78 -214 5 1755 1376 78 62 0 chr4 153364431 153364610 -2265510 + B2_Mm2 SINE B2 3 192 -3 5 1755 494 309 79 47 chr4 153364610 153364825 -2265295 + B4A SINE B4 79 291 -1 5 1755 273 291 49 21 chr4 153364861 153365005 -2265115 + (CATG)n Simple_repeat Simple_repeat 3 150 0 5 1755 442 226 75 42 chr4 153365066 153365186 -2264934 + RSINE1 SINE B4 11 134 -31 5 1755 233 393 0 0 chr4 153365518 153365607 -2264513 + Charlie4z DNA MER1_type 2 90 -77 5 1755 255 250 56 0 chr4 153365976 153366048 -2264072 - PB1D10 SINE Alu -20 97 22 5 1755 310 269 32 0 chr4 153367854 153367940 -2262180 + B1F SINE Alu 1 89 -60 5 1755 522 0 0 0 chr4 153367940 153367998 -2262122 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 5 1755 1479 65 32 0 chr4 153368219 153368405 -2261715 - B2_Mm2 SINE B2 -3 192 1 5 1755 256 277 0 50 chr4 153368639 153368738 -2261382 + G-rich Low_complexity Low_complexity 6 99 0 5 1755 386 313 82 0 chr4 153369098 153369232 -2260888 + RSINE1 SINE B4 4 148 -17 5 1755 378 211 94 10 chr4 153369607 153369703 -2260417 + B1F2 SINE Alu 2 105 -44 5 1755 1330 195 176 0 chr4 153369772 153370090 -2260030 - ORR1D1 LTR MaLR 0 374 1 5 1755 241 298 136 8 chr4 153371814 153371939 -2258181 - Lx8 LINE L1 -400 7073 6933 5 1755 528 291 30 35 chr4 153372235 153372438 -2257682 - RMER12 LTR ERVK 0 1322 1121 5 1755 3683 227 89 62 chr4 153372469 153373296 -2256824 - RMER12 LTR ERVK -131 1191 321 5 1755 1194 68 7 0 chr4 153373296 153373442 -2256678 + B1_Mus2 SINE Alu 1 147 0 5 1755 3683 227 89 62 chr4 153373442 153373771 -2256349 - RMER12 LTR ERVK -1002 320 4 5 1755 2040 167 21 12 chr4 153377398 153377817 -2252303 - RLTR28 LTR ERVL -16 508 86 5 1755 755 134 0 0 chr4 153377833 153377945 -2252175 - B1_Mur4 SINE Alu -34 116 5 5 1755 674 93 10 0 chr4 153377948 153378045 -2252075 - RLTR28 LTR ERVL -383 98 1 5 1755 2378 159 163 41 chr4 153378152 153378662 -2251458 - RMER15 LTR ERVL 0 575 4 5 1755 318 373 37 49 chr4 153379825 153380070 -2250050 - MLT1E3 LTR MaLR -16 608 367 5 1755 601 214 0 25 chr4 153382277 153382397 -2247723 + PB1D7 SINE Alu 1 117 -3 5 1755 32 57 0 0 chr4 153382597 153382650 -2247470 + AT_rich Low_complexity Low_complexity 1 53 0 5 1755 2535 158 34 51 chr4 153382869 153382977 -2247143 - RMER4A LTR ERVK -2 464 345 5 1755 284 0 28 0 chr4 153382977 153383013 -2247107 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1755 2535 158 34 51 chr4 153383013 153383376 -2246744 - RMER4A LTR ERVK -122 344 1 5 1755 1060 198 49 15 chr4 153383388 153383593 -2246527 - B3 SINE B2 -3 213 2 5 1755 637 221 24 0 chr4 153383597 153383724 -2246396 - B1_Mur2 SINE Alu -19 130 1 5 1755 256 306 0 53 chr4 153383751 153383827 -2246293 + ID SINE ID 2 73 -151 5 1755 248 260 40 14 chr4 153383838 153383912 -2246208 + ID_B1 SINE B4 141 216 -8 5 1755 349 339 106 0 chr4 153384443 153384623 -2245497 - MLT1D LTR MaLR -9 496 298 6 1755 781 211 54 67 chr4 153385304 153385372 -2244748 - ID_B1 SINE B4 0 224 152 6 1755 212 0 0 35 chr4 153385372 153385401 -2244719 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1755 965 40 104 0 chr4 153385401 153385526 -2244594 - B1_Mus1 SINE Alu -10 138 1 6 1755 781 211 54 67 chr4 153385526 153385679 -2244441 - ID_B1 SINE B4 -73 151 6 6 1755 324 0 0 0 chr4 153387259 153387295 -2242825 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1755 675 196 90 8 chr4 153390649 153390783 -2239337 + B1_Mur1 SINE Alu 3 147 -2 6 1755 714 174 104 15 chr4 153390784 153390918 -2239202 + B1_Mus1 SINE Alu 1 146 -2 6 1755 215 304 0 0 chr4 153391952 153392008 -2238112 - ID_B1 SINE B4 -85 139 84 6 1755 258 175 0 0 chr4 153391969 153392009 -2238111 - PB1D9 SINE Alu -79 41 2 6 1755 256 340 39 10 chr4 153393254 153393358 -2236762 - PB1D10 SINE Alu -8 109 3 6 1755 413 279 41 8 chr4 153393358 153393397 -2236723 - ID SINE ID -142 82 40 6 1755 573 207 0 38 chr4 153394004 153394190 -2235930 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1755 439 253 0 38 chr4 153394230 153394415 -2235705 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1755 360 0 0 0 chr4 153402485 153402525 -2227595 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1755 268 167 0 69 chr4 153402536 153402594 -2227526 - ID4 SINE ID -28 55 2 6 1755 749 238 72 0 chr4 153402621 153402802 -2227318 + B3A SINE B2 4 197 -1 6 1755 207 0 0 0 chr4 153402855 153402878 -2227242 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1755 1096 187 14 29 chr4 153402885 153403094 -2227026 - B3 SINE B2 -10 206 1 6 1755 261 119 0 0 chr4 153403172 153403214 -2226906 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1755 564 305 6 31 chr4 153403244 153403403 -2226717 + RSINE1 SINE B4 5 159 -6 6 1755 1202 75 0 0 chr4 153403479 153403626 -2226494 + B1_Mm SINE Alu 1 147 0 6 1755 387 234 35 105 chr4 153404285 153404309 -2225811 - ID_B1 SINE B4 0 224 213 6 1755 710 221 94 30 chr4 153404309 153404510 -2225610 - B3 SINE B2 -2 214 1 6 1755 387 234 35 105 chr4 153404510 153404628 -2225492 - ID_B1 SINE B4 -12 212 92 6 1755 545 261 87 22 chr4 153405266 153405450 -2224670 + Lx8 LINE L1 6956 7151 -322 6 1755 543 232 64 106 chr4 153405454 153405519 -2224601 + B3A SINE B2 3 63 -135 6 1755 1211 208 189 28 chr4 153405519 153405841 -2224279 - ORR1D1 LTR MaLR 0 374 1 6 1755 543 232 64 106 chr4 153405841 153405963 -2224157 + B3A SINE B2 64 182 -16 6 1755 914 165 0 4 chr4 153405963 153406208 -2223912 + (CA)n Simple_repeat Simple_repeat 1 243 0 6 1755 822 189 0 0 chr4 153406238 153406418 -2223702 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1755 307 259 40 100 chr4 153406522 153406672 -2223448 + Lx8 LINE L1 7257 7397 -76 6 1755 939 229 55 67 chr4 153408020 153408347 -2221773 + MTE2a LTR MaLR 57 379 0 6 1755 877 163 198 22 chr4 153408596 153408778 -2221342 + B3 SINE B2 1 214 -2 6 1755 266 320 156 27 chr4 153408785 153409010 -2221110 + HAL1 LINE L1 1390 1643 -864 6 1755 279 54 0 0 chr4 153410398 153410435 -2219685 + (TCC)n Simple_repeat Simple_repeat 2 38 0 6 1755 458 108 0 13 chr4 153411141 153411216 -2218904 + (GGA)n Simple_repeat Simple_repeat 2 75 0 6 1755 354 255 12 60 chr4 153411956 153412123 -2217997 - RLTR28 LTR ERVL 0 524 366 6 1755 748 236 70 30 chr4 153412212 153412413 -2217707 + B3 SINE B2 1 209 -7 6 1755 481 250 182 28 chr4 153412490 153412647 -2217473 + B4 SINE B4 82 264 -28 6 1755 195 42 0 0 chr4 153412647 153412671 -2217449 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1755 481 250 182 28 chr4 153412671 153412694 -2217426 + B4 SINE B4 265 289 -3 6 1755 409 267 72 22 chr4 153412904 153412922 -2217198 + ID_B1 SINE B4 79 139 -85 6 1755 435 189 31 31 chr4 153412922 153413020 -2217100 + B1F SINE Alu 19 116 -33 6 1755 409 267 72 22 chr4 153413020 153413042 -2217078 + ID_B1 SINE B4 140 223 -1 6 1755 2805 148 61 26 chr4 153417347 153417853 -2212267 + RLTR11A2 LTR ERVK 4 527 0 6 1755 392 117 13 0 chr4 153418194 153418271 -2211849 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1755 1061 225 10 29 chr4 153418824 153419030 -2211090 - B3 SINE B2 -14 202 1 6 1755 2312 214 4 21 chr4 153419214 153419686 -2210434 + MT2A LTR ERVL 1 464 -69 6 1755 624 184 0 0 chr4 153419698 153419923 -2210197 + (CA)n Simple_repeat Simple_repeat 1 225 0 6 1755 447 275 148 6 chr4 153420014 153420197 -2209923 + B3 SINE B2 3 211 -5 6 1755 967 127 0 57 chr4 153420501 153420660 -2209460 + B1_Mur4 SINE Alu 1 150 0 6 1755 253 335 51 6 chr4 153420677 153420694 -2209426 - L1MEf LINE L1 -4375 1825 1809 6 1755 521 248 18 9 chr4 153420694 153420808 -2209312 - PB1D10 SINE Alu -1 116 2 6 1755 253 335 51 6 chr4 153420808 153420946 -2209174 - L1MEf LINE L1 -4392 1808 1663 6 1755 1678 229 170 35 chr4 153420955 153421561 -2208559 + RMER6C LTR ERVK 3 690 0 6 1755 776 171 42 14 chr4 153421634 153421776 -2208344 - B1_Mur2 SINE Alu 0 149 4 6 1755 506 221 88 0 chr4 153421800 153421913 -2208207 - RSINE1 SINE B4 0 165 43 6 1755 1936 166 59 8 chr4 153422237 153422608 -2207512 - RLTR18 LTR ERVK 0 616 227 6 1755 250 320 68 60 chr4 153422778 153422911 -2207209 + MTD LTR MaLR 6 139 -240 6 1755 289 257 70 134 chr4 153422950 153423107 -2207013 + MTD LTR MaLR 273 419 0 6 1755 1180 82 0 7 chr4 153423168 153423316 -2206804 + B1_Mus1 SINE Alu 1 147 -1 6 1755 213 119 0 0 chr4 153423476 153423518 -2206602 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1755 271 234 7 26 chr4 153424000 153424116 -2206004 + B3A SINE B2 2 182 -16 6 1755 930 169 2 0 chr4 153424116 153424705 -2205415 + (CA)n Simple_repeat Simple_repeat 1 590 0 6 1755 1043 59 0 0 chr4 153424798 153424934 -2205186 + B1_Mus1 SINE Alu 13 148 0 6 1755 252 0 0 0 chr4 153424935 153424963 -2205157 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1755 236 86 0 28 chr4 153424967 153425003 -2205117 + B3A SINE B2 46 80 -118 6 1755 1363 71 44 0 chr4 153425230 153425412 -2204708 - B2_Mm1t SINE B2 -2 191 2 6 1755 604 344 43 76 chr4 153427320 153427509 -2202611 - RMER20B LTR ERVK -38 589 410 6 1755 1638 26 21 0 chr4 153427509 153427698 -2202422 - B2_Mm1a SINE B2 0 193 1 6 1755 604 344 43 76 chr4 153427698 153427876 -2202244 - RMER20B LTR ERVK -218 409 234 6 1755 208 276 35 0 chr4 153429806 153429864 -2200256 + (CACCT)n Simple_repeat Simple_repeat 1 60 0 6 1755 207 208 53 15 chr4 153431343 153431411 -2198709 + MIRc SINE MIR 77 142 -134 6 1755 300 368 28 28 chr4 153434922 153435031 -2195089 - L1MCa LINE L1 -4498 2010 1902 6 1755 324 158 0 0 chr4 153435053 153435110 -2195010 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 6 1755 574 120 8 64 chr4 153435128 153435253 -2194867 - Lx3C LINE L1 -2 6974 6857 6 1755 220 216 93 13 chr4 153435739 153435814 -2194306 - MIRb SINE MIR -71 197 117 6 1755 195 271 169 0 chr4 153435781 153435840 -2194280 - MIRm SINE MIR -126 150 82 6 1755 498 342 4 7 chr4 153438993 153439270 -2190850 + (CCCA)n Simple_repeat Simple_repeat 1 275 0 6 1755 252 143 0 0 chr4 153439288 153439330 -2190790 + (CCCA)n Simple_repeat Simple_repeat 3 44 0 6 1755 505 132 16 0 chr4 153439766 153439887 -2190233 + (TG)n Simple_repeat Simple_repeat 1 123 0 6 1755 308 152 17 0 chr4 153439913 153439972 -2190148 - HAL1-3A_ME LINE L1 -824 2034 1975 6 1755 309 198 0 0 chr4 153439973 153440064 -2190056 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1755 501 99 36 0 chr4 153440851 153440962 -2189158 + (CAGA)n Simple_repeat Simple_repeat 2 116 0 6 1755 665 172 201 13 chr4 153442785 153442799 -2187321 - B2_Mm2 SINE B2 -5 190 176 6 1755 414 0 0 0 chr4 153442799 153442845 -2187275 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 1755 665 172 201 13 chr4 153442845 153442989 -2187131 - B2_Mm2 SINE B2 -20 175 3 6 1755 208 70 47 0 chr4 153443002 153443045 -2187075 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 6 1755 1171 68 7 0 chr4 153443047 153443194 -2186926 - B1_Mus1 SINE Alu 0 148 1 6 1755 315 202 0 0 chr4 153445927 153446011 -2184109 + C-rich Low_complexity Low_complexity 1 84 0 6 1755 23 0 0 0 chr4 153446086 153446109 -2184011 + GC_rich Low_complexity Low_complexity 1 23 0 6 1755 495 48 0 0 chr4 153446345 153446407 -2183713 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1755 708 98 0 0 chr4 153447187 153447289 -2182831 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 6 1755 1416 73 17 0 chr4 153447289 153447467 -2182653 - B2_Mm2 SINE B2 -14 181 1 6 1755 429 70 0 0 chr4 153447474 153447531 -2182589 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 6 1755 250 367 47 8 chr4 153447896 153448025 -2182095 + MER21B LTR ERV1 23 156 -707 6 1755 250 30 0 130 chr4 153448025 153448140 -2181980 + (CTGGGG)n Simple_repeat Simple_repeat 6 105 0 6 1755 648 341 69 61 chr4 153448140 153448518 -2181602 + MER21B LTR ERV1 114 494 -369 6 1755 540 116 147 0 chr4 153448483 153448578 -2181542 + URR1B DNA MER1_type 115 223 -2 6 1755 239 319 128 61 chr4 153448578 153448668 -2181452 - CYRA11_Mm Unknown Y-chromosome -429 188 87 6 1755 254 361 90 30 chr4 153449514 153449636 -2180484 + RMER12 LTR ERVK 632 759 -563 6 1755 965 136 0 6 chr4 153449636 153449814 -2180306 + (TG)n Simple_repeat Simple_repeat 1 177 0 6 1755 254 361 90 30 chr4 153449814 153449959 -2180161 + RMER12 LTR ERVK 760 915 -407 6 1755 184 275 126 84 chr4 153450995 153451138 -2178982 - MIRb SINE MIR -115 153 5 6 1755 250 336 122 32 chr4 153451593 153451839 -2178281 + MLT2B5 LTR ERVL 258 525 -76 6 1755 249 83 0 0 chr4 153452118 153452154 -2177966 + (TGGG)n Simple_repeat Simple_repeat 1 36 0 6 1755 339 78 0 0 chr4 153452196 153452247 -2177873 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1755 195 42 0 0 chr4 153452293 153452317 -2177803 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 6 1755 265 360 0 28 chr4 153452721 153452864 -2177256 + (TATATG)n Simple_repeat Simple_repeat 3 141 0 6 1755 296 314 128 8 chr4 153454734 153454859 -2175261 + MIR SINE MIR 9 148 -114 6 1755 194 250 0 0 chr4 153456649 153456689 -2173431 - MIR SINE MIR -96 166 127 6 1755 1111 141 10 20 chr4 153457222 153457417 -2172703 - B2_Mm2 SINE B2 -1 194 2 6 1755 295 287 11 0 chr4 153457445 153457532 -2172588 - B3 SINE B2 -1 215 128 6 1755 780 195 13 9 chr4 153457930 153458079 -2172041 - B3A SINE B2 -58 137 1 6 1755 956 242 13 31 chr4 153458726 153458952 -2171168 - ID_B1 SINE B4 0 224 3 6 1755 262 242 0 0 chr4 153458953 153459019 -2171101 + L1MB8 LINE L1 6112 6177 -1 7 1755 332 330 11 0 chr4 153459622 153459716 -2170404 - BC1_Mm scRNA scRNA -56 96 2 7 1755 676 314 180 4 chr4 153459784 153460062 -2170058 - MER2 DNA MER2_type -7 338 12 7 1755 555 144 0 0 chr4 153460249 153460346 -2169774 + (TGAA)n Simple_repeat Simple_repeat 2 98 0 7 1755 184 30 29 29 chr4 153463754 153463788 -2166332 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1755 1115 72 0 0 chr4 153463788 153463926 -2166194 - B1_Mus2 SINE Alu -9 138 1 7 1755 636 188 0 38 chr4 153464108 153464291 -2165829 + CT-rich Low_complexity Low_complexity 3 178 0 7 1755 225 169 27 40 chr4 153464310 153464384 -2165736 + CT-rich Low_complexity Low_complexity 2 74 0 7 1755 641 171 21 0 chr4 153467784 153468069 -2162051 + (TG)n Simple_repeat Simple_repeat 1 291 0 7 1755 252 0 0 0 chr4 153468218 153468246 -2161874 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1755 234 0 0 0 chr4 153468246 153468271 -2161849 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1755 270 0 0 0 chr4 153468271 153468300 -2161820 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1755 884 243 104 61 chr4 153469254 153469534 -2160586 + B4 SINE B4 1 292 0 7 1755 303 196 47 23 chr4 153469553 153469725 -2160395 + (CA)n Simple_repeat Simple_repeat 2 177 0 7 1755 212 260 27 0 chr4 153469949 153470022 -2160098 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1755 276 100 0 0 chr4 153470109 153470159 -2159961 + BGLII_B LTR ERVK 1 50 -391 7 1755 652 107 23 76 chr4 153470164 153470295 -2159825 + BGLII_B LTR ERVK 19 142 -299 7 1755 396 0 0 0 chr4 153472108 153472152 -2157968 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1755 416 238 47 9 chr4 153474248 153474354 -2155766 - PB1D9 SINE Alu -8 112 3 7 1755 235 348 48 34 chr4 153474621 153474767 -2155353 - MIRc SINE MIR -118 150 3 7 1755 186 250 23 0 chr4 153477062 153477106 -2153014 + MIRm SINE MIR 124 168 -108 7 1755 236 295 62 47 chr4 153478126 153478254 -2151866 + MLT1K LTR MaLR 368 497 -98 7 1755 200 292 14 27 chr4 153479141 153479215 -2150905 + CT-rich Low_complexity Low_complexity 1 73 0 7 1755 241 268 88 16 chr4 153480187 153480332 -2149788 - MIRc SINE MIR -72 204 47 7 1755 214 338 55 48 chr4 153480517 153480664 -2149456 - MIR3 SINE MIR -46 230 77 7 1755 219 309 44 0 chr4 153481039 153481107 -2149013 + PB1D10 SINE Alu 9 79 -38 7 1755 282 56 0 0 chr4 153481196 153481232 -2148888 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 7 1755 580 216 0 0 chr4 153481235 153481337 -2148783 - RSINE1 SINE B4 -61 104 3 7 1755 27 0 0 0 chr4 153481339 153481366 -2148754 + AT_rich Low_complexity Low_complexity 1 27 0 7 1755 225 94 0 0 chr4 153482369 153482401 -2147719 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 7 1755 649 155 23 17 chr4 153482467 153482644 -2147476 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 7 1755 666 95 47 12 chr4 153482688 153482859 -2147261 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 7 1755 795 233 12 18 chr4 153483099 153483265 -2146855 - RSINE1 SINE B4 0 165 1 7 1755 185 270 63 0 chr4 153484074 153484137 -2145983 - MIRc SINE MIR -121 147 81 7 1756 293 292 28 2 chr4 153486155 153486271 -2143849 + MIRc SINE MIR 69 187 -89 7 1756 340 130 0 0 chr4 153487192 153487246 -2142874 - ETnERV3-int LTR ERVK -5752 56 3 7 1756 5344 91 74 100 chr4 153487248 153488165 -2141955 - RLTR13B1 LTR ERVK 0 893 1 7 1756 266 288 12 48 chr4 153488964 153489048 -2141072 + RSINE1 SINE B4 2 82 -83 7 1756 498 286 68 0 chr4 153489461 153489594 -2140526 + B1F1 SINE Alu 1 142 -7 7 1756 270 73 0 0 chr4 153489790 153489831 -2140289 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1756 300 246 45 136 chr4 153491371 153491526 -2138594 + MT2B LTR ERVL 99 239 -362 7 1756 726 191 7 47 chr4 153491449 153491597 -2138523 + B1_Mur2 SINE Alu 7 148 -1 7 1756 523 319 72 6 chr4 153491854 153492021 -2138099 - B3A SINE B2 -20 178 1 7 1756 194 291 18 0 chr4 153493937 153493992 -2136128 + L2b LINE L2 3317 3372 -3 7 1756 736 191 6 6 chr4 153494009 153494183 -2135937 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 7 1756 404 214 6 34 chr4 153494228 153494407 -2135713 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 7 1756 514 254 113 65 chr4 153495181 153495366 -2134754 + B3A SINE B2 1 194 -4 7 1756 280 323 5 107 chr4 153497127 153497273 -2132847 + L1MA4 LINE L1 5067 5195 -652 7 1756 989 181 38 66 chr4 153497273 153497486 -2132634 + B3 SINE B2 3 209 -7 7 1756 280 323 5 107 chr4 153497486 153497526 -2132594 + L1MA4 LINE L1 5196 5234 -613 7 1756 633 299 35 10 chr4 153497527 153497730 -2132390 + B3 SINE B2 9 216 0 7 1756 674 313 176 26 chr4 153497731 153498317 -2131803 + L1MA4 LINE L1 5277 5926 -374 7 1756 288 0 0 0 chr4 153498678 153498710 -2131410 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1756 261 130 22 0 chr4 153498785 153498831 -2131289 + B2_Mm2 SINE B2 1 47 -148 7 1756 947 156 6 0 chr4 153498841 153499020 -2131100 + CT-rich Low_complexity Low_complexity 1 180 0 7 1756 352 200 0 160 chr4 153499210 153499335 -2130785 - PB1 SINE Alu 0 120 16 7 1756 249 111 0 0 chr4 153500011 153500047 -2130073 + B4 SINE B4 38 73 -219 1 1756 427 306 74 13 chr4 153500072 153500221 -2129899 + RSINE1 SINE B4 2 159 -6 2 1756 216 0 0 0 chr4 153500376 153500400 -2129720 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1756 252 284 0 0 chr4 153500421 153500516 -2129604 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1756 254 241 0 0 chr4 153500539 153500593 -2129527 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1756 219 242 0 0 chr4 153500618 153500680 -2129440 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1756 348 211 0 0 chr4 153500705 153500781 -2129339 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1756 225 250 0 0 chr4 153500805 153500865 -2129255 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1756 282 160 0 0 chr4 153500890 153500940 -2129180 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1756 774 124 0 0 chr4 153502086 153502207 -2127913 + (GA)n Simple_repeat Simple_repeat 2 122 0 5 1756 289 191 27 146 chr4 153502787 153502897 -2127223 + B3A SINE B2 101 197 -1 6 1756 756 257 31 16 chr4 153503118 153503312 -2126808 - B3 SINE B2 0 216 20 7 1756 875 130 0 7 chr4 153503569 153503716 -2126404 + (GGAAA)n Simple_repeat Simple_repeat 5 150 0 8 1756 257 361 5 38 chr4 153503739 153503894 -2126226 + GA-rich Low_complexity Low_complexity 1 150 0 9 1756 1310 110 16 6 chr4 153503894 153504077 -2126043 + B2_Mm2 SINE B2 1 185 -10 1 1756 257 361 5 38 chr4 153504077 153504105 -2126015 + polypurine Low_complexity Low_complexity 151 178 0 1 1756 1069 203 62 38 chr4 153504153 153504393 -2125727 - MTD LTR MaLR -160 259 14 1 1756 232 281 20 128 chr4 153504429 153504531 -2125589 - PB1 SINE Alu -25 102 12 1 1756 519 209 8 25 chr4 153504574 153504692 -2125428 - B1_Mur1 SINE Alu -6 143 28 1 1756 857 209 75 21 chr4 153504735 153504921 -2125199 - B3A SINE B2 -1 197 2 1 1756 584 195 43 15 chr4 153505193 153505366 -2124754 - B3 SINE B2 -6 192 11 1 1756 456 306 90 0 chr4 153505778 153505912 -2124208 + RSINE1 SINE B4 1 146 -19 1 1756 303 49 0 0 chr4 153505920 153505961 -2124159 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 1756 1271 170 19 0 chr4 153506409 153506621 -2123499 + B3 SINE B2 1 216 0 1 1756 618 279 14 50 chr4 153506632 153506851 -2123269 + B4A SINE B4 82 292 0 2 1756 1648 42 0 0 chr4 153506881 153507074 -2123046 - B2_Mm1a SINE B2 0 193 1 2 1756 438 308 92 12 chr4 153507095 153507335 -2122785 + MER31-int LTR ERV1 4248 4506 -430 2 1756 324 0 0 0 chr4 153507835 153507871 -2122249 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1756 702 173 0 45 chr4 153508001 153508134 -2121986 + B1_Mur1 SINE Alu 17 143 -6 2 1756 567 0 0 0 chr4 153508278 153508341 -2121779 + (CAAAT)n Simple_repeat Simple_repeat 4 66 0 2 1756 368 171 0 28 chr4 153508594 153508666 -2121454 - RMER1B Other Other -593 473 404 2 1756 1708 236 73 44 chr4 153508689 153509386 -2120734 + RMER1B Other Other 1 517 -549 2 1756 269 289 90 14 chr4 153510548 153510692 -2119428 - Charlie4a DNA MER1_type -336 172 18 2 1756 260 291 33 25 chr4 153510895 153511015 -2119105 + MIR SINE MIR 117 237 -25 2 1756 951 59 0 0 chr4 153511144 153511279 -2118841 + (GA)n Simple_repeat Simple_repeat 1 135 0 3 1756 548 277 65 0 chr4 153512161 153512316 -2117804 - RSINE1 SINE B4 0 165 1 3 1756 388 248 158 0 chr4 153512443 153512576 -2117544 - MIRc SINE MIR -85 183 30 3 1756 421 310 18 0 chr4 153513012 153513125 -2116995 + RSINE1 SINE B4 17 131 -34 3 1756 333 0 0 0 chr4 153515342 153515379 -2114741 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 3 1756 532 314 49 49 chr4 153515897 153516121 -2113999 - ID_B1 SINE B4 0 224 1 3 1756 355 237 158 17 chr4 153516220 153516340 -2113780 - MER53 DNA hAT -15 178 42 3 1756 24 85 0 0 chr4 153516674 153516733 -2113387 + GC_rich Low_complexity Low_complexity 1 59 0 3 1756 621 248 0 0 chr4 153517354 153517479 -2112641 + RSINE1 SINE B4 5 129 -36 3 1756 204 40 0 0 chr4 153517584 153517609 -2112511 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 3 1756 464 157 32 53 chr4 153517617 153517711 -2112409 - B1_Mus2 SINE Alu -55 92 1 4 1756 247 239 15 15 chr4 153517822 153517890 -2112230 + B4 SINE B4 16 83 -209 4 1756 219 36 0 0 chr4 153518292 153518320 -2111800 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1756 305 77 0 37 chr4 153518320 153518373 -2111747 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 4 1756 425 304 60 56 chr4 153518375 153518626 -2111494 - B4 SINE B4 -17 275 38 4 1756 258 291 95 19 chr4 153518627 153518732 -2111388 - B1_Mus1 SINE Alu 0 117 5 4 1756 297 0 0 0 chr4 153518747 153518780 -2111340 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1756 779 133 16 8 chr4 153518783 153518912 -2111208 - B1_Mus2 SINE Alu -7 140 11 4 1756 452 217 53 86 chr4 153518912 153518932 -2111188 - B4 SINE B4 -71 219 76 4 1756 1191 75 11 6 chr4 153518935 153519110 -2111010 + B2_Mm1t SINE B2 11 186 -7 4 1756 642 194 271 0 chr4 153519807 153519977 -2110143 - B3 SINE B2 0 216 1 5 1756 1697 36 0 0 chr4 153520103 153520296 -2109824 - B2_Mm1a SINE B2 0 193 1 5 1756 257 214 18 0 chr4 153520862 153520918 -2109202 + RSINE1 SINE B4 2 58 -107 5 1756 731 164 45 0 chr4 153521509 153521643 -2108477 - B1_Mur1 SINE Alu 0 149 10 5 1756 353 206 9 0 chr4 153523807 153523914 -2106206 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 1756 201 74 0 0 chr4 153523913 153523940 -2106180 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 5 1756 240 238 0 0 chr4 153523941 153524025 -2106095 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1756 331 242 146 48 chr4 153524029 153524155 -2105965 - B3A SINE B2 -16 182 36 5 1756 1065 97 107 18 chr4 153524155 153524323 -2105797 - B2_Mm1t SINE B2 -9 184 2 5 1756 331 242 146 48 chr4 153524323 153524361 -2105759 - B3A SINE B2 -163 35 2 5 1756 480 265 52 35 chr4 153524877 153525049 -2105071 + B3 SINE B2 42 216 0 5 1756 673 270 90 56 chr4 153525073 153525340 -2104780 + B4A SINE B4 11 286 -6 6 1756 272 354 24 102 chr4 153528046 153528301 -2101819 - ORR1E LTR MaLR 0 359 125 6 1756 877 192 112 5 chr4 153529755 153529969 -2100151 - Lx5 LINE L1 0 7050 6814 6 1756 448 148 56 11 chr4 153529964 153530053 -2100067 + Lx5 LINE L1 6709 6801 -249 6 1756 22 35 0 0 chr4 153534402 153534431 -2095689 + GC_rich Low_complexity Low_complexity 1 29 0 6 1756 32 26 0 0 chr4 153534765 153534804 -2095316 + GC_rich Low_complexity Low_complexity 1 39 0 6 1756 262 100 0 0 chr4 153535996 153536036 -2094084 + B3 SINE B2 2 41 -175 6 1756 1255 21 0 14 chr4 153536036 153536184 -2093936 + B1_Mus2 SINE Alu 2 147 0 6 1756 1583 52 0 20 chr4 153536221 153536417 -2093703 + B2_Mm1t SINE B2 2 193 0 6 1756 479 214 74 19 chr4 153536417 153536571 -2093549 + B3 SINE B2 28 175 -18 6 1756 434 187 45 45 chr4 153536634 153536744 -2093376 - MTC LTR MaLR -206 215 106 6 1756 484 61 0 0 chr4 153536744 153536810 -2093310 + B1_Mus2 SINE Alu 1 66 -81 7 1756 225 0 0 0 chr4 153537972 153537997 -2092123 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1756 711 255 33 0 chr4 153538205 153538358 -2091762 + RSINE1 SINE B4 4 161 -4 7 1756 244 366 44 7 chr4 153538478 153538613 -2091507 - MLT1D LTR MaLR -349 156 17 7 1756 1931 211 23 49 chr4 153538818 153538924 -2091196 + MTD LTR MaLR 3 108 -311 7 1756 180 0 0 0 chr4 153538924 153538944 -2091176 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 7 1756 243 0 0 0 chr4 153538945 153538972 -2091148 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1756 1216 42 0 0 chr4 153538972 153539116 -2091004 - B1_Mus2 SINE Alu -3 144 1 7 1756 1931 211 23 49 chr4 153539116 153539434 -2090686 + MTD LTR MaLR 109 418 -1 7 1756 409 182 9 100 chr4 153539926 153540036 -2090084 - PB1D10 SINE Alu 0 117 18 7 1756 381 232 60 10 chr4 153540423 153540523 -2089597 + B1_Mur2 SINE Alu 14 118 -31 7 1756 919 159 7 7 chr4 153540841 153540987 -2089133 + B1_Mus2 SINE Alu 2 147 0 8 1756 995 221 5 25 chr4 153541016 153541216 -2088904 - B3 SINE B2 -16 200 5 8 1756 587 322 0 0 chr4 153541529 153541675 -2088445 + RSINE1 SINE B4 4 149 -16 8 1756 228 122 0 0 chr4 153542463 153542504 -2087616 + (C)n Simple_repeat Simple_repeat 1 41 0 8 1756 361 237 53 0 chr4 153542517 153542593 -2087527 - ID SINE ID -144 80 1 8 1756 183 162 0 0 chr4 153543596 153543633 -2086487 + CT-rich Low_complexity Low_complexity 4 40 0 8 1756 296 204 8 77 chr4 153544742 153544859 -2085261 + G-rich Low_complexity Low_complexity 4 112 0 8 1756 270 0 0 0 chr4 153547935 153547965 -2082155 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1756 768 111 0 0 chr4 153548734 153548869 -2081251 + (GA)n Simple_repeat Simple_repeat 2 136 0 8 1756 300 300 78 139 chr4 153548878 153549122 -2080998 - LTR33 LTR ERVL -252 263 35 8 1756 3243 42 42 0 chr4 153553410 153553794 -2076326 - MTB LTR MaLR 0 400 1 9 1756 542 338 40 5 chr4 153553829 153554031 -2076089 - B4A SINE B4 -83 209 1 9 1756 2830 44 0 135 chr4 153554098 153554520 -2075600 - RLTR10B2 LTR ERVK 0 365 1 9 1756 1046 240 60 46 chr4 153555828 153556112 -2074008 + B4A SINE B4 1 288 -4 9 1756 198 0 0 0 chr4 153559035 153559057 -2071063 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1756 209 211 0 19 chr4 153560885 153560938 -2069182 + CT-rich Low_complexity Low_complexity 1 52 0 9 1756 619 174 0 18 chr4 153560940 153561051 -2069069 - B1_Mur1 SINE Alu -1 148 40 9 1756 274 268 40 40 chr4 153560981 153561082 -2069038 - RLTR25B LTR ERVK -521 507 407 9 1756 792 287 41 5 chr4 153561074 153561270 -2068850 - ID_B1 SINE B4 -20 204 2 9 1756 1173 159 37 0 chr4 153561819 153561834 -2068286 + MTD LTR MaLR 1 15 -404 9 1756 322 21 43 0 chr4 153561834 153561881 -2068239 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1756 1173 184 43 30 chr4 153561881 153562163 -2067957 + MTD LTR MaLR 16 288 -119 9 1756 558 299 53 150 chr4 153562165 153562539 -2067581 - MTE2a LTR MaLR -41 338 1 1 1756 304 243 14 0 chr4 153563598 153563672 -2066448 - ORR1C1 LTR MaLR 0 378 304 1 1756 823 262 30 17 chr4 153563724 153563957 -2066163 - Lx6 LINE L1 -15 7445 7210 1 1756 195 42 0 0 chr4 153564102 153564126 -2065994 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1756 365 303 0 22 chr4 153565196 153565287 -2064833 - BC1_Mm scRNA scRNA -52 100 12 1 1756 539 124 11 58 chr4 153565291 153565479 -2064641 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1756 932 89 0 37 chr4 153565499 153565686 -2064434 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1756 836 114 6 33 chr4 153565706 153565888 -2064232 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1756 482 131 46 29 chr4 153565908 153566081 -2064039 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1756 225 0 0 0 chr4 153566100 153566125 -2063995 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1756 324 70 0 0 chr4 153567142 153567185 -2062935 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1756 476 172 23 23 chr4 153567192 153567323 -2062797 + GA-rich Low_complexity Low_complexity 6 136 0 1 1756 31 68 0 0 chr4 153567363 153567422 -2062698 + AT_rich Low_complexity Low_complexity 1 59 0 1 1756 410 70 0 5 chr4 153567425 153567490 -2062630 - B2_Mm2 SINE B2 -107 109 47 1 1756 1322 48 54 0 chr4 153567518 153567686 -2062434 - B2_Mm1t SINE B2 -14 179 3 1 1756 1443 68 5 35 chr4 153567868 153568066 -2062054 - B2_Mm1t SINE B2 0 193 2 1 1756 2525 270 100 74 chr4 153568470 153569754 -2060366 - RMER12 LTR ERVK -5 1317 1 1 1756 1539 138 175 35 chr4 153569802 153570088 -2060032 - ORR1A3 LTR MaLR 0 326 1 1 1756 1524 47 16 5 chr4 153570277 153570469 -2059651 + B2_Mm2 SINE B2 1 194 -1 1 1756 396 331 24 30 chr4 153571690 153571855 -2058265 - RMER15 LTR ERVL -5 570 407 1 1756 341 62 62 0 chr4 153574898 153574963 -2055157 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1756 1218 55 0 0 chr4 153575143 153575289 -2054831 + B1_Mus1 SINE Alu 3 148 0 1 1756 207 100 0 0 chr4 153575289 153575319 -2054801 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1756 220 194 0 0 chr4 153582262 153582298 -2047822 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1756 234 340 31 61 chr4 153582299 153582528 -2047592 + RMER12 LTR ERVK 737 958 -364 1 1756 269 345 8 85 chr4 153582517 153582647 -2047473 - B4A SINE B4 0 292 173 1 1756 278 329 25 0 chr4 153582684 153582763 -2047357 - B4A SINE B4 -211 81 1 1 1756 582 28 0 0 chr4 153584689 153584761 -2045359 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1756 388 141 50 29 chr4 153584958 153585203 -2044917 + (TG)n Simple_repeat Simple_repeat 1 250 0 1 1756 247 175 24 40 chr4 153585250 153585375 -2044745 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1756 321 151 45 32 chr4 153585395 153585552 -2044568 + (TG)n Simple_repeat Simple_repeat 1 159 0 1 1756 227 113 31 31 chr4 153585584 153585648 -2044472 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1756 474 198 26 43 chr4 153585843 153585959 -2044161 + RSINE1 SINE B4 49 162 -3 1 1756 704 243 105 0 chr4 153586227 153586408 -2043712 + B3 SINE B2 15 214 -2 1 1756 332 311 86 74 chr4 153586522 153586685 -2043435 + RSINE1 SINE B4 1 165 0 1 1756 323 284 0 24 chr4 153586714 153586797 -2043323 - B3A SINE B2 -78 120 40 1 1756 387 0 0 0 chr4 153587246 153587289 -2042831 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1756 396 0 0 0 chr4 153588086 153588130 -2041990 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1756 245 365 46 31 chr4 153588190 153588320 -2041800 - MLT1D LTR MaLR -151 354 223 1 1756 1161 21 0 0 chr4 153588408 153588548 -2041572 + (CAGCC)n Simple_repeat Simple_repeat 1 140 0 1 1756 1669 213 38 39 chr4 153590182 153590650 -2039470 + RMER4B LTR ERVK 1 585 0 1 1756 273 339 35 24 chr4 153590896 153591065 -2039055 + MLT1D LTR MaLR 77 247 -258 1 1756 713 177 171 0 chr4 153591238 153591396 -2038724 - B3 SINE B2 -28 188 4 1 1756 360 0 0 0 chr4 153592538 153592578 -2037542 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1756 291 28 0 0 chr4 153592769 153592805 -2037315 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1756 236 312 36 107 chr4 153593070 153593210 -2036910 - BGLII_B LTR ERVK -46 395 266 1 1756 1261 54 0 0 chr4 153595180 153595328 -2034792 + B1_Mus1 SINE Alu 1 148 0 1 1756 227 88 0 0 chr4 153596347 153596381 -2033739 - B1_Mus2 SINE Alu -22 125 92 1 1756 234 155 276 0 chr4 153596351 153596409 -2033711 - PB1D9 SINE Alu -26 94 21 1 1756 198 326 79 30 chr4 153597225 153597326 -2032794 - MER5B DNA MER1_type -23 155 50 1 1756 474 256 30 15 chr4 153600555 153600690 -2029430 - B1F SINE Alu -9 140 4 1 1756 487 317 89 5 chr4 153601504 153601707 -2028413 - B4 SINE B4 0 292 73 1 1756 651 237 83 22 chr4 153604234 153604415 -2025705 + ID_B1 SINE B4 27 218 -6 1 1756 395 349 16 7 chr4 153604920 153605131 -2024989 + G-rich Low_complexity Low_complexity 1 213 0 1 1756 918 290 44 65 chr4 153606929 153607316 -2022804 - MTE2a LTR MaLR 0 379 1 1 1756 411 247 40 55 chr4 153608688 153608915 -2021205 - ORR1D1 LTR MaLR -115 269 1 1 1756 1547 216 44 22 chr4 153608915 153609067 -2021053 - MTD LTR MaLR -32 387 231 1 1756 2641 165 140 23 chr4 153609067 153609582 -2020538 - RMER15 LTR ERVL 0 575 1 1 1756 1547 216 44 22 chr4 153609582 153609793 -2020327 - MTD LTR MaLR -189 230 16 1 1756 459 0 0 0 chr4 153612059 153612110 -2018010 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1756 957 199 11 26 chr4 153612111 153612302 -2017818 - B3 SINE B2 0 216 29 1 1756 305 310 142 59 chr4 153614106 153614135 -2015985 - MLT1D LTR MaLR -40 465 439 1 1756 1093 231 9 9 chr4 153614135 153614345 -2015775 + ID_B1 SINE B4 3 212 -12 1 1756 306 0 0 0 chr4 153614345 153614379 -2015741 + (CAA)n Simple_repeat Simple_repeat 1 34 0 1 1756 305 310 142 59 chr4 153614379 153614602 -2015518 - MLT1D LTR MaLR -67 438 192 1 1756 220 246 70 0 chr4 153614622 153614679 -2015441 - PB1D7 SINE Alu -59 61 1 1 1757 438 226 9 45 chr4 153618325 153618436 -2011684 - ID_B1 SINE B4 -32 192 86 1 1757 992 209 26 0 chr4 153618516 153618707 -2011413 - B3 SINE B2 -5 211 16 1 1757 243 0 0 0 chr4 153620397 153620424 -2009696 + (GCTTG)n Simple_repeat Simple_repeat 3 29 0 1 1757 295 259 106 94 chr4 153620780 153620926 -2009194 - MLT1A LTR MaLR -5 369 240 1 1757 206 175 0 48 chr4 153620994 153621078 -2009042 + (CGGGG)n Simple_repeat Simple_repeat 1 80 0 1 1757 197 65 32 0 chr4 153623339 153623370 -2006750 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1 1757 380 20 20 0 chr4 153624380 153624429 -2005691 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1757 912 42 0 8 chr4 153624429 153624541 -2005579 - B1_Mus1 SINE Alu -11 137 26 1 1757 1148 116 0 6 chr4 153625661 153625835 -2004285 + B2_Mm2 SINE B2 2 174 -21 1 1757 1209 36 7 0 chr4 153625835 153625975 -2004145 + B1_Mm SINE Alu 1 141 -6 1 1757 320 64 0 21 chr4 153625977 153626025 -2004095 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1757 195 146 0 0 chr4 153628079 153628120 -2002000 + (G)n Simple_repeat Simple_repeat 1 41 0 1 1757 372 298 0 0 chr4 153628926 153629097 -2001023 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 1 1757 558 251 0 0 chr4 153629060 153629239 -2000881 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1 1757 876 217 7 14 chr4 153629260 153629556 -2000564 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 1 1757 299 336 48 14 chr4 153630423 153630568 -1999552 + L3 LINE CR1 4319 4468 -21 1 1757 929 158 13 0 chr4 153630711 153630869 -1999251 - URR1B DNA MER1_type -65 160 1 1 1757 466 298 28 62 chr4 153630869 153630885 -1999235 + CYRA11_Mm Unknown Y-chromosome 237 404 -213 1 1757 2677 77 0 0 chr4 153630909 153631236 -1998884 - ORR1A2 LTR MaLR 0 327 1 1 1757 303 214 0 0 chr4 153634583 153634653 -1995467 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1757 590 213 7 0 chr4 153634668 153634823 -1995297 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 1757 856 159 11 0 chr4 153635163 153635339 -1994781 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1757 829 176 9 0 chr4 153635361 153635696 -1994424 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 1757 295 183 24 0 chr4 153635713 153635795 -1994325 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1757 237 33 0 0 chr4 153637944 153637974 -1992146 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1757 1361 210 12 35 chr4 153638108 153638436 -1991684 - RLTR12B LTR ERVK -4 524 205 1 1757 506 204 27 38 chr4 153638433 153638591 -1991529 - RLTR12B LTR ERVK -253 315 144 1 1757 820 25 141 0 chr4 153638624 153638745 -1991375 - B1_Mm SINE Alu 0 147 10 1 1757 749 139 124 0 chr4 153638745 153638882 -1991238 - RLTR12B LTR ERVK -374 154 1 1 1757 1128 62 13 34 chr4 153645346 153645495 -1984625 + B1_Mus2 SINE Alu 2 147 0 1 1757 333 0 0 0 chr4 153645495 153645532 -1984588 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1757 216 97 0 0 chr4 153646301 153646332 -1983788 + (CGTG)n Simple_repeat Simple_repeat 4 34 0 1 1757 479 274 81 0 chr4 153649670 153649794 -1980326 + RSINE1 SINE B4 4 137 -28 1 1757 21 36 0 0 chr4 153649797 153649825 -1980295 + AT_rich Low_complexity Low_complexity 1 28 0 1 1757 604 239 63 15 chr4 153649903 153650084 -1980036 - B3A SINE B2 -9 186 1 1 1757 281 257 9 0 chr4 153650132 153650241 -1979879 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1757 352 258 164 31 chr4 153650606 153650734 -1979386 - B1F2 SINE Alu -3 146 2 1 1757 481 311 40 50 chr4 153650819 153651019 -1979101 + B3 SINE B2 19 216 0 1 1757 285 75 0 0 chr4 153651910 153651950 -1978170 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1757 501 298 73 78 chr4 153653436 153653640 -1976480 - B4 SINE B4 0 292 90 1 1757 252 370 51 28 chr4 153654537 153654715 -1975405 + L2a LINE L2 2983 3164 -262 1 1757 261 57 0 0 chr4 153654876 153654911 -1975209 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1 1757 294 29 0 0 chr4 153656793 153656828 -1973292 + (TGGG)n Simple_repeat Simple_repeat 1 35 0 1 1757 314 257 57 0 chr4 153659428 153659498 -1970622 - ID4_ SINE ID -2 81 8 1 1757 351 188 26 0 chr4 153662621 153662738 -1967382 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1757 295 225 21 3 chr4 153662789 153663139 -1966981 + (TG)n Simple_repeat Simple_repeat 1 356 0 1 1757 200 200 0 0 chr4 153663163 153663208 -1966912 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 1 1757 237 315 0 14 chr4 153664089 153664163 -1965957 - MIRc SINE MIR -119 149 77 1 1757 1233 48 0 0 chr4 153664164 153664310 -1965810 + B1_Mus2 SINE Alu 2 147 0 1 1757 189 0 0 0 chr4 153664310 153664331 -1965789 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1757 367 202 4 67 chr4 153667418 153667525 -1962595 + PB1D10 SINE Alu 17 115 -2 2 1757 575 296 48 0 chr4 153669093 153669117 -1961003 - B3A SINE B2 -3 195 171 2 1757 414 151 0 0 chr4 153669117 153669190 -1960930 + (CATG)n Simple_repeat Simple_repeat 3 75 0 2 1757 673 267 25 0 chr4 153669190 153669351 -1960769 - B3 SINE B2 -51 165 1 2 1757 725 136 22 43 chr4 153669363 153669501 -1960619 - B1_Mur1 SINE Alu -1 148 14 2 1757 388 230 44 80 chr4 153669394 153669531 -1960589 - MT2B LTR ERVL -323 278 147 2 1757 231 114 0 0 chr4 153669882 153669917 -1960203 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1757 461 263 80 7 chr4 153669944 153670082 -1960038 - B1F SINE Alu 0 149 2 2 1757 1218 48 0 7 chr4 153672403 153672551 -1957569 - B1_Mus2 SINE Alu 0 147 1 2 1757 976 207 0 78 chr4 153672589 153672820 -1957300 + B3 SINE B2 2 214 -2 2 1757 183 80 0 0 chr4 153675009 153675034 -1955086 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1757 1339 102 5 16 chr4 153675161 153675351 -1954769 + B2_Mm1a SINE B2 2 189 -4 2 1757 632 243 21 7 chr4 153676138 153676279 -1953841 - B1_Mur1 SINE Alu -5 144 2 2 1757 192 77 0 0 chr4 153676591 153676617 -1953503 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 2 1757 2281 222 87 2 chr4 153676816 153677308 -1952812 + Lx6 LINE L1 6798 7331 -129 2 1757 1226 117 0 0 chr4 153677308 153677483 -1952637 - ORR1A2 LTR MaLR -2 324 150 2 1757 844 95 125 0 chr4 153677483 153677623 -1952497 + B2_Mm1t SINE B2 2 171 -22 2 1757 387 0 0 0 chr4 153677623 153677666 -1952454 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1757 844 86 108 0 chr4 153677666 153677681 -1952439 + B2_Mm1t SINE B2 172 187 -6 2 1757 728 230 40 6 chr4 153677678 153677853 -1952267 - ORR1A2 LTR MaLR -165 181 1 2 1757 11557 125 56 19 chr4 153677853 153678760 -1951360 - ORR1A2-int LTR MaLR 0 1963 1046 2 1757 324 0 0 0 chr4 153678768 153678804 -1951316 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1757 1144 64 0 14 chr4 153678804 153678938 -1951182 - B1_Mus1 SINE Alu -13 135 2 2 1757 11557 125 56 19 chr4 153678938 153679923 -1950197 - ORR1A2-int LTR MaLR -918 1045 2 2 1757 2365 100 19 0 chr4 153679924 153680245 -1949875 - ORR1A2 LTR MaLR 0 327 1 2 1757 439 203 23 23 chr4 153680246 153680377 -1949743 + Lx6 LINE L1 7330 7460 0 2 1757 677 237 82 38 chr4 153680392 153680576 -1949544 + B3A SINE B2 5 196 -2 2 1757 1173 273 102 0 chr4 153680607 153680951 -1949169 - MTEa LTR MaLR 0 379 1 2 1757 504 336 44 28 chr4 153681107 153681428 -1948692 + L1MEf LINE L1 1451 1776 -4466 2 1757 38 22 0 0 chr4 153681428 153681473 -1948647 + AT_rich Low_complexity Low_complexity 1 45 0 2 1757 438 180 124 18 chr4 153681523 153681636 -1948484 + MTD LTR MaLR 281 405 -14 2 1757 510 363 135 49 chr4 153681668 153682120 -1948000 + L1MEf LINE L1 2997 3487 -2659 2 1757 449 310 89 67 chr4 153682217 153682400 -1947720 + L1MEf LINE L1 3632 3825 -2321 2 1757 3595 40 28 14 chr4 153682400 153682830 -1947290 - RLTR10C LTR ERVK 0 436 1 2 1757 449 310 89 67 chr4 153682830 153683091 -1947029 + L1MEf LINE L1 3826 4109 -2037 2 1757 1090 322 86 38 chr4 153684097 153684214 -1945906 + L1MC1 LINE L1 5413 5528 -805 2 1757 5054 188 21 13 chr4 153684214 153685115 -1945005 + RMER13B LTR ERVK 1 908 0 2 1757 1090 322 86 38 chr4 153685115 153685553 -1944567 + L1MC1 LINE L1 5529 5995 -338 2 1757 277 269 103 28 chr4 153685651 153685796 -1944324 + L1MC1 LINE L1 6160 6315 -18 2 1757 370 184 39 13 chr4 153685807 153685884 -1944236 + B3A SINE B2 1 79 -119 2 1757 1107 117 11 33 chr4 153688184 153688798 -1941322 + (TCCA)n Simple_repeat Simple_repeat 1 600 0 2 1757 461 261 194 7 chr4 153689376 153689515 -1940605 - RSINE1 SINE B4 0 165 1 2 1757 216 0 0 0 chr4 153690426 153690450 -1939670 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1757 216 180 0 39 chr4 153690839 153690891 -1939229 + A-rich Low_complexity Low_complexity 3 52 0 2 1757 198 91 0 0 chr4 153690958 153690991 -1939129 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1757 221 93 55 18 chr4 153691006 153691061 -1939059 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1757 24 32 0 0 chr4 153694384 153694415 -1935705 + AT_rich Low_complexity Low_complexity 1 31 0 2 1757 207 114 0 0 chr4 153697484 153697519 -1932601 + (TCC)n Simple_repeat Simple_repeat 2 36 0 2 1757 234 222 0 0 chr4 153698194 153698248 -1931872 + CT-rich Low_complexity Low_complexity 4 57 0 2 1757 249 57 0 0 chr4 153698257 153698292 -1931828 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1757 646 286 108 52 chr4 153698311 153698480 -1931640 - B4 SINE B4 -8 284 92 2 1757 189 0 0 0 chr4 153698480 153698501 -1931619 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 2 1757 1121 87 0 0 chr4 153698501 153698639 -1931481 - B1_Mus1 SINE Alu -7 141 4 2 1757 1402 108 0 5 chr4 153698647 153698843 -1931277 - B2_Mm2 SINE B2 0 195 1 2 1757 646 286 108 52 chr4 153698843 153698854 -1931266 - B4 SINE B4 -209 83 78 2 1757 414 0 0 0 chr4 153698854 153698900 -1931220 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1757 646 286 108 52 chr4 153698900 153698977 -1931143 - B4 SINE B4 -215 77 3 2 1757 616 274 80 0 chr4 153699005 153699180 -1930940 - B3A SINE B2 -5 193 5 2 1757 255 152 0 0 chr4 153700179 153700225 -1929895 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1757 1667 42 0 0 chr4 153701575 153701767 -1928353 - B2_Mm1a SINE B2 -1 192 1 2 1757 900 84 15 0 chr4 153701778 153701909 -1928211 - B1_Mus1 SINE Alu 0 148 16 2 1757 189 231 19 19 chr4 153701910 153701963 -1928157 + MIRm SINE MIR 101 153 -123 2 1757 249 208 0 0 chr4 153702137 153702190 -1927930 + CT-rich Low_complexity Low_complexity 2 54 0 2 1757 257 179 0 60 chr4 153702687 153702770 -1927350 + (CCCCG)n Simple_repeat Simple_repeat 1 78 0 2 1757 762 296 28 24 chr4 153706243 153706492 -1923628 - B4A SINE B4 -2 290 41 2 1757 567 153 0 0 chr4 153709062 153709160 -1920960 + (CGTG)n Simple_repeat Simple_repeat 3 100 0 2 1757 2386 116 0 3 chr4 153716521 153716849 -1913271 + ORR1A2 LTR MaLR 1 327 0 2 1757 219 125 0 0 chr4 153717482 153717522 -1912598 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1757 207 69 0 0 chr4 153717552 153717581 -1912539 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1757 233 155 17 0 chr4 153717624 153717682 -1912438 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1757 432 328 0 0 chr4 153720532 153720648 -1909472 + PB1D10 SINE Alu 1 116 -1 2 1757 231 167 0 0 chr4 153723133 153723175 -1906945 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1757 318 361 12 0 chr4 153723303 153723472 -1906648 + (TG)n Simple_repeat Simple_repeat 1 171 0 2 1757 795 21 0 0 chr4 153724016 153724109 -1906011 + (CTGTG)n Simple_repeat Simple_repeat 5 97 0 2 1757 748 286 49 120 chr4 153724490 153724939 -1905181 + RLTR12B LTR ERVK 81 497 -31 2 1757 29 28 0 0 chr4 153725407 153725443 -1904677 + AT_rich Low_complexity Low_complexity 1 36 0 2 1757 686 239 14 0 chr4 153725443 153725585 -1904535 - B1_Mur1 SINE Alu -4 145 2 2 1757 375 171 0 0 chr4 153727505 153727581 -1902539 + GA-rich Low_complexity Low_complexity 3 78 0 2 1757 724 273 11 11 chr4 153727677 153727855 -1902265 + B4 SINE B4 112 289 -3 2 1757 772 267 81 19 chr4 153728321 153728592 -1901528 + B4A SINE B4 1 288 -4 2 1757 235 305 0 0 chr4 153728602 153728661 -1901459 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2 1757 1592 174 136 14 chr4 153728839 153729212 -1900908 + MTD LTR MaLR 1 403 -16 2 1757 198 0 0 0 chr4 153729307 153729329 -1900791 + (TGG)n Simple_repeat Simple_repeat 2 23 0 2 1757 709 209 145 31 chr4 153729621 153729765 -1900355 - B3 SINE B2 -1 215 45 2 1757 1280 161 13 39 chr4 153729765 153729997 -1900123 + URR1A DNA MER1_type 1 226 0 2 1757 709 209 145 31 chr4 153729997 153730045 -1900075 - B3 SINE B2 -172 44 1 2 1757 34 24 0 0 chr4 153730052 153730093 -1900027 + AT_rich Low_complexity Low_complexity 1 41 0 2 1757 450 252 87 0 chr4 153730117 153730232 -1899888 - RSINE1 SINE B4 -37 128 4 2 1757 700 183 12 17 chr4 153730721 153730961 -1899159 + (TG)n Simple_repeat Simple_repeat 1 238 0 2 1757 4912 139 73 71 chr4 153731188 153732088 -1898032 - RMER19B LTR ERVK 0 902 1 2 1757 234 0 0 0 chr4 153734694 153734720 -1895400 + (C)n Simple_repeat Simple_repeat 1 26 0 2 1757 1194 43 0 0 chr4 153734859 153734997 -1895123 + B1_Mm SINE Alu 1 138 -9 2 1757 279 0 0 0 chr4 153734997 153735028 -1895092 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1757 198 0 0 0 chr4 153735456 153735478 -1894642 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1757 398 179 29 11 chr4 153735840 153736015 -1894105 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1757 230 171 14 0 chr4 153736033 153736103 -1894017 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1757 466 271 57 0 chr4 153736132 153736272 -1893848 - RSINE1 SINE B4 0 165 18 2 1757 228 67 0 0 chr4 153738696 153738726 -1891394 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1757 375 41 0 0 chr4 153739148 153739197 -1890923 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1757 474 18 0 0 chr4 153740262 153740317 -1889803 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1757 253 323 41 107 chr4 153744213 153744456 -1885664 + RMER12 LTR ERVK 732 958 -364 2 1757 198 167 0 0 chr4 153744491 153744527 -1885593 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1757 216 270 27 0 chr4 153745932 153746006 -1884114 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1757 748 49 56 0 chr4 153746658 153746801 -1883319 + (TC)n Simple_repeat Simple_repeat 1 151 0 2 1758 346 316 74 45 chr4 153749529 153749551 -1880569 + CYRA11_Mm Unknown Y-chromosome 138 165 -452 2 1758 1129 154 5 28 chr4 153749551 153749765 -1880355 - URR1B DNA MER1_type 0 225 17 2 1758 261 163 0 0 chr4 153750328 153750377 -1879743 + CT-rich Low_complexity Low_complexity 3 51 0 2 1758 420 195 38 0 chr4 153751524 153751683 -1878437 + (TGGA)n Simple_repeat Simple_repeat 2 166 0 2 1758 239 229 34 0 chr4 153751749 153751867 -1878253 + (TGGA)n Simple_repeat Simple_repeat 1 122 0 2 1758 348 226 37 0 chr4 153751883 153752127 -1877993 + (TGGA)n Simple_repeat Simple_repeat 1 253 0 2 1758 587 154 41 0 chr4 153752138 153752307 -1877813 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 2 1758 239 232 49 0 chr4 153752322 153752486 -1877634 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 2 1758 558 0 0 0 chr4 153753928 153753990 -1876130 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 1758 294 138 0 0 chr4 153753990 153754048 -1876072 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1758 1008 243 83 11 chr4 153754076 153754342 -1875778 - B4A SINE B4 0 292 8 2 1758 243 0 0 0 chr4 153760377 153760404 -1869716 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 1758 727 230 42 4 chr4 153760415 153760616 -1869504 - B3A SINE B2 -5 211 2 2 1758 525 255 119 31 chr4 153760616 153760799 -1869321 - B4A SINE B4 -70 222 23 2 1758 487 164 29 17 chr4 153761495 153761669 -1868451 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1758 310 178 38 23 chr4 153761695 153761827 -1868293 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1758 635 245 50 0 chr4 153763044 153763183 -1866937 - ID_B1 SINE B4 0 224 79 2 1758 236 144 10 62 chr4 153765257 153765353 -1864767 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 3 1758 258 105 0 0 chr4 153766357 153766395 -1863725 + (CAT)n Simple_repeat Simple_repeat 1 38 0 3 1758 396 0 0 0 chr4 153766577 153766621 -1863499 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 3 1758 949 124 25 12 chr4 153766756 153766919 -1863201 - URR1A DNA MER1_type 0 226 62 3 1758 1132 239 35 114 chr4 153769628 153770024 -1860096 - MTE2a LTR MaLR -11 368 4 3 1758 21 0 0 0 chr4 153770754 153770775 -1859345 + AT_rich Low_complexity Low_complexity 1 21 0 3 1758 219 383 44 4 chr4 153771190 153771320 -1858800 + MIRb SINE MIR 73 208 -54 3 1758 405 58 0 0 chr4 153771954 153772006 -1858114 + (CATA)n Simple_repeat Simple_repeat 2 53 0 3 1758 205 182 0 0 chr4 153772007 153772040 -1858080 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 3 1758 851 169 28 0 chr4 153772195 153772371 -1857749 + B3 SINE B2 1 195 0 3 1758 235 335 143 15 chr4 153772377 153772580 -1857540 + L1MEf LINE L1 835 1063 -5137 3 1758 362 291 43 86 chr4 153772674 153772711 -1857409 + B4 SINE B4 70 219 -68 3 1758 397 156 0 143 chr4 153772689 153772801 -1857319 + MT2B LTR ERVL 169 264 -337 3 1758 828 100 0 0 chr4 153772711 153772831 -1857289 + B1_Mus2 SINE Alu 23 142 -5 3 1758 907 179 0 0 chr4 153772907 153773052 -1857068 + B1_Mur1 SINE Alu 3 147 -2 3 1758 509 325 52 9 chr4 153773052 153773282 -1856838 + L1M5 LINE L1 5289 5528 -634 3 1758 227 31 31 0 chr4 153773346 153773378 -1856742 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 1758 1326 296 95 43 chr4 153777462 153778084 -1852036 + L1MA6 LINE L1 4163 4816 -1327 3 1758 243 310 37 84 chr4 153778088 153778278 -1851842 + YREP_Mm Unknown Unknown 114 294 -1518 3 1758 859 238 41 10 chr4 153778178 153778373 -1851747 - ID_B1 SINE B4 -21 203 3 3 1758 526 284 77 5 chr4 153778379 153778574 -1851546 + L1MA6 LINE L1 4847 5055 -1088 3 1758 1147 285 101 10 chr4 153778743 153779296 -1850824 + L1MA6 LINE L1 5099 5715 -585 3 1758 826 272 129 20 chr4 153779379 153779634 -1850486 + B4 SINE B4 10 292 0 3 1758 362 229 36 139 chr4 153779652 153779789 -1850331 + MT2B LTR ERVL 141 263 -338 3 1758 735 137 15 44 chr4 153779689 153779826 -1850294 + B1_Mur4 SINE Alu 18 150 0 3 1758 331 305 112 6 chr4 153779856 153780034 -1850086 + L1MA6 LINE L1 5812 6008 -292 3 1758 382 275 105 36 chr4 153780065 153780284 -1849836 + L1MA6 LINE L1 6067 6300 0 3 1758 284 293 0 0 chr4 153782984 153783076 -1847044 + G-rich Low_complexity Low_complexity 1 92 0 3 1758 433 288 291 0 chr4 153788502 153788787 -1841333 + HAL1-3A_ME LINE L1 2070 2437 -421 3 1758 332 189 35 18 chr4 153788787 153788900 -1841220 + GA-rich Low_complexity Low_complexity 1 115 0 3 1758 405 0 0 0 chr4 153789666 153789711 -1840409 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1758 464 191 23 17 chr4 153790302 153790478 -1839642 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1758 263 300 14 35 chr4 153790527 153790672 -1839448 + (TATG)n Simple_repeat Simple_repeat 4 145 0 3 1758 237 316 30 0 chr4 153791177 153791344 -1838776 + (CATA)n Simple_repeat Simple_repeat 1 172 0 3 1758 1056 15 45 29 chr4 153791388 153791814 -1838306 + (CA)n Simple_repeat Simple_repeat 1 432 0 3 1758 565 294 0 0 chr4 153791930 153792066 -1838054 - B3A SINE B2 -36 162 27 3 1758 639 26 0 0 chr4 153792082 153792159 -1837961 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 1758 198 219 0 0 chr4 153792173 153792237 -1837883 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1758 327 152 38 0 chr4 153792890 153792969 -1837151 + GA-rich Low_complexity Low_complexity 6 87 0 3 1758 647 272 5 49 chr4 153793101 153793306 -1836814 + B3A SINE B2 2 197 -1 3 1758 446 241 350 5 chr4 153795867 153796067 -1834053 + B4A SINE B4 3 271 -21 3 1758 299 179 0 15 chr4 153796080 153796148 -1833972 + GA-rich Low_complexity Low_complexity 2 68 0 3 1758 1047 135 0 0 chr4 153796148 153796318 -1833802 + (GAAA)n Simple_repeat Simple_repeat 4 173 0 3 1758 246 32 0 0 chr4 153796765 153796796 -1833324 + (CCTG)n Simple_repeat Simple_repeat 3 33 0 3 1758 207 0 0 0 chr4 153797351 153797374 -1832746 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1758 225 0 0 0 chr4 153797722 153797747 -1832373 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 1758 182 171 24 0 chr4 153798436 153798477 -1831643 + CT-rich Low_complexity Low_complexity 5 46 0 3 1758 361 245 0 41 chr4 153800851 153800949 -1829171 + RSINE1 SINE B4 3 96 -69 3 1758 211 174 0 56 chr4 153802056 153802113 -1828007 - MIRm SINE MIR -116 160 102 3 1758 229 211 64 26 chr4 153802663 153802741 -1827379 - MIRm SINE MIR -128 148 68 3 1758 1914 87 141 10 chr4 153804577 153804868 -1825252 - ORR1A4 LTR MaLR 0 329 1 3 1758 264 309 40 16 chr4 153805389 153805514 -1824606 + L1M5 LINE L1 5618 5745 -419 3 1758 344 287 100 8 chr4 153805573 153805703 -1824417 + B4A SINE B4 1 142 -150 3 1758 265 0 0 161 chr4 153805703 153805840 -1824280 + (CAGAG)n Simple_repeat Simple_repeat 1 115 0 3 1758 414 292 139 0 chr4 153805843 153805980 -1824140 + B4 SINE B4 127 282 -10 3 1758 380 362 69 29 chr4 153807799 153808075 -1822045 + L1M4 LINE L1 5481 5767 -411 3 1758 628 241 88 60 chr4 153808385 153808601 -1821519 - B4 SINE B4 -68 224 3 3 1758 503 154 178 28 chr4 153808601 153808706 -1821414 - B1_Mus1 SINE Alu -27 121 1 3 1758 266 183 0 91 chr4 153808647 153808713 -1821407 - B4A SINE B4 -152 140 81 3 1758 431 294 68 7 chr4 153808772 153808919 -1821201 - MER82 DNA MER2_type -466 187 32 3 1758 804 183 0 0 chr4 153809282 153809526 -1820594 + (TG)n Simple_repeat Simple_repeat 1 244 0 3 1758 517 292 29 7 chr4 153809526 153809664 -1820456 - RSINE1 SINE B4 0 165 25 3 1758 455 218 156 86 chr4 153810272 153810458 -1819662 + B3 SINE B2 1 199 -17 3 1758 678 192 0 9 chr4 153810460 153810789 -1819331 + (CA)n Simple_repeat Simple_repeat 1 325 0 3 1758 423 0 0 0 chr4 153811356 153811403 -1818717 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1758 440 211 55 100 chr4 153811469 153811717 -1818403 + MTEb LTR MaLR 116 361 -18 3 1758 381 43 0 0 chr4 153813844 153813891 -1816229 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1758 330 167 0 0 chr4 153814453 153814513 -1815607 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1758 767 255 46 15 chr4 153816144 153816339 -1813781 + B3 SINE B2 3 203 -13 3 1758 461 260 6 0 chr4 153816363 153816532 -1813588 + (CA)n Simple_repeat Simple_repeat 1 170 0 3 1758 199 222 14 47 chr4 153818166 153818236 -1811884 - MIR SINE MIR -111 157 87 3 1758 322 290 0 0 chr4 153820266 153820373 -1809747 + G-rich Low_complexity Low_complexity 3 109 0 3 1758 408 20 0 0 chr4 153822627 153822676 -1807444 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1758 378 42 0 0 chr4 153825860 153825908 -1804212 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1758 468 0 0 0 chr4 153827436 153827488 -1802632 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1758 363 304 12 23 chr4 153827561 153827733 -1802387 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1758 198 0 0 0 chr4 153831181 153831203 -1798917 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1758 387 0 0 0 chr4 153831338 153831381 -1798739 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1758 391 286 11 28 chr4 153831388 153831631 -1798489 + (CATA)n Simple_repeat Simple_repeat 1 238 0 3 1758 334 349 18 0 chr4 153835374 153835508 -1794612 + B4A SINE B4 83 230 -62 3 1758 644 246 35 5 chr4 153835508 153835661 -1794459 + B3A SINE B2 3 150 -48 3 1758 350 85 17 0 chr4 153835661 153835720 -1794400 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1758 407 269 29 82 chr4 153835720 153835736 -1794384 + B2_Mm2 SINE B2 149 163 -32 3 1758 326 250 13 26 chr4 153835727 153835805 -1794315 + B4A SINE B4 216 292 0 3 1758 252 333 0 0 chr4 153837415 153837481 -1792639 + Tigger5 DNA MER2_type 54 119 -2287 3 1758 207 100 0 0 chr4 153837759 153837789 -1792331 + (CAT)n Simple_repeat Simple_repeat 2 31 0 3 1758 601 236 26 46 chr4 153839550 153839701 -1790419 + RSINE1 SINE B4 1 148 -17 3 1758 443 63 16 0 chr4 153839713 153839776 -1790344 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1758 987 283 146 38 chr4 153839803 153840384 -1789736 + Lx9 LINE L1 6999 7642 -2 3 1758 22 0 0 0 chr4 153840417 153840439 -1789681 + AT_rich Low_complexity Low_complexity 1 22 0 3 1758 918 261 160 4 chr4 153841312 153841562 -1788558 - B4A SINE B4 -2 290 2 3 1758 232 348 45 6 chr4 153841787 153841943 -1788177 - L1MC2 LINE L1 -170 6174 6013 3 1758 243 88 0 0 chr4 153843324 153843358 -1786762 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 3 1758 1024 141 133 20 chr4 153843506 153843709 -1786411 + URR1A DNA MER1_type 1 226 0 3 1758 295 306 26 46 chr4 153843709 153843737 -1786383 - CYRA11_Mm Unknown Y-chromosome -446 171 147 3 1758 1452 57 0 11 chr4 153844047 153844226 -1785894 + B2_Mm2 SINE B2 1 177 -18 3 1758 313 53 51 39 chr4 153846341 153846419 -1783701 + (TTTTTG)n Simple_repeat Simple_repeat 2 80 0 3 1758 183 211 0 81 chr4 153848430 153848492 -1781628 - MIRm SINE MIR -133 143 87 3 1758 186 71 0 0 chr4 153850178 153850206 -1779914 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1758 278 269 137 34 chr4 153850921 153851067 -1779053 - MTE2a LTR MaLR -13 366 206 3 1758 408 20 0 0 chr4 153853045 153853094 -1777026 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1758 293 274 35 99 chr4 153855477 153855619 -1774501 - B1_Mur4 SINE Alu -8 142 10 3 1758 740 307 5 20 chr4 153855500 153855696 -1774424 - B4A SINE B4 -79 213 21 3 1758 622 203 6 6 chr4 153859692 153859851 -1770269 + CT-rich Low_complexity Low_complexity 4 162 0 3 1758 231 272 8 16 chr4 153859863 153859990 -1770130 + T-rich Low_complexity Low_complexity 2 127 0 3 1758 509 228 0 7 chr4 153860755 153860892 -1769228 + GA-rich Low_complexity Low_complexity 3 138 0 3 1758 852 164 17 0 chr4 153860904 153861081 -1769039 + GA-rich Low_complexity Low_complexity 1 180 0 3 1758 724 276 47 155 chr4 153861140 153861224 -1768896 + B4A SINE B4 14 86 -206 3 1758 701 285 22 11 chr4 153861224 153861405 -1768715 + B3A SINE B2 1 183 -15 4 1758 724 276 47 155 chr4 153861405 153861616 -1768504 + B4A SINE B4 87 277 -15 3 1758 455 206 0 6 chr4 153863397 153863563 -1766557 + CT-rich Low_complexity Low_complexity 1 165 0 4 1758 657 190 0 0 chr4 153863576 153863755 -1766365 + CT-rich Low_complexity Low_complexity 2 180 0 4 1758 234 0 0 0 chr4 153863762 153863788 -1766332 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 4 1758 455 276 32 0 chr4 153865522 153865645 -1764475 - Tigger5 DNA MER2_type -2 2404 2278 4 1758 335 382 25 0 chr4 153865701 153865858 -1764262 - Tigger5 DNA MER2_type -2237 169 9 4 1758 189 0 0 0 chr4 153866164 153866185 -1763935 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1758 566 211 298 0 chr4 153866185 153866346 -1763774 - B3 SINE B2 -7 209 1 4 1758 292 293 35 91 chr4 153866646 153866845 -1763275 - MIRc SINE MIR -60 208 21 4 1758 351 96 0 0 chr4 153868482 153868534 -1761586 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1758 1039 278 80 11 chr4 153868780 153869129 -1760991 + MER121 Unknown Unknown 38 410 -2 4 1758 597 276 134 31 chr4 153870427 153870621 -1759499 - B4 SINE B4 -77 215 2 4 1758 184 219 24 0 chr4 153872383 153872424 -1757696 - MIRc SINE MIR -143 125 84 4 1758 903 268 16 87 chr4 153878122 153878481 -1751639 + RLTR11B LTR ERVK 3 342 -186 4 219 583 227 13 32 chr4 153878467 153878622 -1751498 + RLTR11B LTR ERVK 280 431 -22 4 1759 510 17 0 0 chr4 153879067 153879126 -1750994 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1759 300 188 0 165 chr4 153881937 153882052 -1748068 + L1MC4a LINE L1 6979 7074 -808 4 1759 218 175 0 0 chr4 153883207 153883247 -1746873 + C-rich Low_complexity Low_complexity 1 40 0 4 1759 211 320 71 39 chr4 153883701 153883828 -1746292 - MIR SINE MIR -119 143 13 4 1759 513 0 0 0 chr4 153885015 153885072 -1745048 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1759 21 57 0 0 chr4 153886404 153886439 -1743681 + AT_rich Low_complexity Low_complexity 1 35 0 4 1759 597 232 116 22 chr4 153887547 153887728 -1742392 + B3A SINE B2 1 198 0 4 1759 359 365 34 29 chr4 153888000 153888175 -1741945 + MLT1B LTR MaLR 1 176 -214 4 1759 678 291 20 39 chr4 153888178 153888382 -1741738 + B3 SINE B2 2 201 -15 4 1759 879 160 14 0 chr4 153889029 153889173 -1740947 + B1_Mus2 SINE Alu 1 146 -1 4 1759 209 296 24 12 chr4 153889188 153889270 -1740850 - MIR3 SINE MIR -9 199 117 4 1759 510 276 172 0 chr4 153889314 153889488 -1740632 + ID_B1 SINE B4 3 206 -18 4 1759 471 297 56 76 chr4 153891380 153891577 -1738543 - ID_B1 SINE B4 -1 223 31 4 1759 1354 16 23 0 chr4 153891846 153892104 -1738016 + (CCTG)n Simple_repeat Simple_repeat 1 264 0 4 1759 270 0 0 0 chr4 153893107 153893137 -1736983 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1759 207 69 0 0 chr4 153893559 153893588 -1736532 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1759 1447 147 0 9 chr4 153894605 153894831 -1735289 + URR1A DNA MER1_type 1 224 -2 4 1759 414 0 0 0 chr4 153895974 153896020 -1734100 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1759 236 314 14 0 chr4 153896204 153896274 -1733846 - MER5A1 DNA MER1_type -7 159 89 4 1759 190 326 124 0 chr4 153896402 153896491 -1733629 - L4 LINE RTE -260 1769 1670 4 1759 369 0 0 0 chr4 153896655 153896696 -1733424 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1759 218 56 0 27 chr4 153899594 153899631 -1730489 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1759 826 151 9 5 chr4 153900246 153900467 -1729653 + (CA)n Simple_repeat Simple_repeat 1 222 0 4 1759 328 261 120 23 chr4 153904085 153904218 -1725902 - L1MA6 LINE L1 -157 6143 5998 4 1759 404 321 35 35 chr4 153904518 153904689 -1725431 + L1MB5 LINE L1 5996 6166 -8 4 1759 186 118 0 0 chr4 153904905 153904939 -1725181 + (G)n Simple_repeat Simple_repeat 1 34 0 4 1759 339 113 0 0 chr4 153905500 153905553 -1724567 + (T)n Simple_repeat Simple_repeat 1 53 0 4 1759 535 129 33 66 chr4 153906783 153906966 -1723154 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 4 1759 419 0 20 0 chr4 153907331 153907382 -1722738 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1759 1329 178 63 8 chr4 153908685 153908940 -1721180 + ORR1D1 LTR MaLR 1 269 -105 4 1759 314 225 7 0 chr4 153908962 153909104 -1721016 + (CA)n Simple_repeat Simple_repeat 2 144 0 4 1759 829 184 13 0 chr4 153909124 153909766 -1720354 + (CA)n Simple_repeat Simple_repeat 1 650 0 4 1759 231 189 0 0 chr4 153911886 153911939 -1718181 + (TGGG)n Simple_repeat Simple_repeat 4 56 0 4 1759 1231 117 12 0 chr4 153912011 153912524 -1717596 + (TGGA)n Simple_repeat Simple_repeat 1 519 0 4 1759 244 393 11 17 chr4 153912536 153912712 -1717408 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 4 1759 612 227 28 21 chr4 153912754 153912898 -1717222 - B1F SINE Alu -4 145 1 4 1759 250 340 19 0 chr4 153914375 153914478 -1715642 + MLT1B LTR MaLR 46 150 -240 4 1759 213 294 0 0 chr4 153915519 153915587 -1714533 + ID4 SINE ID 16 83 0 4 1759 882 329 74 15 chr4 153915604 153916064 -1714056 - L1MB3 LINE L1 -9 6174 5688 4 1759 255 79 0 0 chr4 153917633 153917671 -1712449 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 4 1759 185 311 176 24 chr4 153918538 153918663 -1711457 - MIR SINE MIR -107 155 12 4 1759 360 0 0 0 chr4 153918818 153918858 -1711262 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1759 216 0 0 0 chr4 153918858 153918881 -1711239 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1759 306 0 0 0 chr4 153918881 153918914 -1711206 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1759 214 305 111 77 chr4 153920558 153920608 -1709512 - B2_Mm2 SINE B2 -7 188 2 4 1759 662 223 0 8 chr4 153920608 153920739 -1709381 - RSINE1 SINE B4 -33 132 3 4 1759 27 0 0 0 chr4 153922121 153922148 -1707972 + AT_rich Low_complexity Low_complexity 1 27 0 4 1759 310 276 23 0 chr4 153922624 153922711 -1707409 + MLT1B LTR MaLR 300 388 -2 4 1759 240 172 0 0 chr4 153925636 153925694 -1704426 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 4 1759 555 256 104 96 chr4 153925932 153926270 -1703850 + MLT1B LTR MaLR 40 367 -7 4 1759 320 296 11 0 chr4 153926875 153926963 -1703157 - MER53 DNA hAT -97 96 8 4 1759 383 276 29 0 chr4 153927881 153927986 -1702134 - MER53 DNA hAT -85 108 1 4 1759 211 135 27 0 chr4 153931931 153931968 -1698152 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 4 1759 730 269 62 10 chr4 153931968 153932163 -1697957 - ID_B1 SINE B4 -14 210 6 4 1759 797 222 85 25 chr4 153932216 153932415 -1697705 - B3 SINE B2 -4 212 2 4 1759 2059 180 81 10 chr4 153932797 153933190 -1696930 + MTC LTR MaLR 1 421 0 4 1759 228 135 0 0 chr4 153933586 153933623 -1696497 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1759 1358 216 136 35 chr4 153934313 153934368 -1695752 - MTD LTR MaLR -4 415 361 4 1759 1923 174 88 63 chr4 153934368 153934779 -1695341 + MTC LTR MaLR 1 421 0 4 1759 1358 216 136 35 chr4 153934779 153935092 -1695028 - MTD LTR MaLR -59 360 10 4 1759 725 271 133 0 chr4 153935468 153935671 -1694449 + B4A SINE B4 2 232 -60 4 1759 496 202 8 26 chr4 153935671 153935788 -1694332 + B3 SINE B2 1 115 -101 4 1759 263 370 62 62 chr4 153935788 153935962 -1694158 + B4A SINE B4 2 292 0 4 1759 402 143 0 0 chr4 153936819 153936896 -1693224 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1759 213 195 0 0 chr4 153939453 153939494 -1690626 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1759 647 249 111 160 chr4 153939513 153939819 -1690301 - B4 SINE B4 0 292 2 4 1759 549 0 0 0 chr4 153941682 153941743 -1688377 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1759 219 196 0 19 chr4 153944384 153944436 -1685684 + (TAA)n Simple_repeat Simple_repeat 2 52 0 4 1759 27 29 0 0 chr4 153946105 153946139 -1683981 + AT_rich Low_complexity Low_complexity 1 34 0 4 1759 2410 86 9 58 chr4 153954482 153954826 -1675294 + ORR1A2 LTR MaLR 1 327 0 4 1759 283 50 0 118 chr4 153955927 153955995 -1674125 + CT-rich Low_complexity Low_complexity 1 60 0 4 1759 258 156 0 0 chr4 153962699 153962744 -1667376 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1759 202 261 18 0 chr4 153963939 153964050 -1666070 + (TG)n Simple_repeat Simple_repeat 1 113 0 4 1759 299 227 8 0 chr4 153964105 153964233 -1665887 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 1759 236 326 22 15 chr4 153964238 153964375 -1665745 + (TATG)n Simple_repeat Simple_repeat 1 138 0 4 1759 1368 62 0 5 chr4 153964894 153965105 -1665015 + (CA)n Simple_repeat Simple_repeat 1 210 0 4 1759 186 237 169 0 chr4 153967114 153967173 -1662947 - L2 LINE L2 -565 2854 2786 4 1759 225 209 35 41 chr4 153969256 153969426 -1660694 + CT-rich Low_complexity Low_complexity 5 173 0 4 1759 414 0 0 0 chr4 153971036 153971082 -1659038 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1759 207 0 0 0 chr4 153971456 153971479 -1658641 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1759 822 250 144 3 chr4 153976059 153976344 -1653776 + MLT1B LTR MaLR 7 331 -59 4 1759 1426 144 13 9 chr4 153976753 153976977 -1653143 - URR1B DNA MER1_type 0 225 1 4 1759 1216 99 47 0 chr4 153980104 153980275 -1649845 + B2_Mm2 SINE B2 2 180 -15 4 1759 697 268 131 52 chr4 153980303 153980571 -1649549 - B4A SINE B4 -2 290 2 4 1759 272 48 0 23 chr4 153980597 153980640 -1649480 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 4 1759 860 228 39 24 chr4 153981938 153982145 -1647975 - B3 SINE B2 0 216 7 4 1759 621 197 7 68 chr4 153982185 153982332 -1647788 + B1_Mur1 SINE Alu 11 148 -1 4 1759 210 143 0 28 chr4 153984522 153984558 -1645562 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1759 772 190 17 15 chr4 153984559 153985029 -1645091 + (CATA)n Simple_repeat Simple_repeat 1 470 0 4 1759 3111 118 140 21 chr4 153986652 153987172 -1642948 - MT2B2 LTR ERVL -2 582 1 4 1759 891 136 64 0 chr4 153989447 153989587 -1640533 + B1_Mur4 SINE Alu 1 149 -1 4 1759 228 176 25 75 chr4 153990768 153990848 -1639272 + T-rich Low_complexity Low_complexity 1 76 0 4 1759 829 260 64 35 chr4 153990885 153991168 -1638952 - B4A SINE B4 0 292 2 5 1759 255 93 0 0 chr4 153992048 153992091 -1638029 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1759 200 259 19 0 chr4 153992686 153992740 -1637380 + G-rich Low_complexity Low_complexity 2 56 0 5 1759 1143 76 0 14 chr4 153993019 153993166 -1636954 + B1_Mus1 SINE Alu 2 146 -2 5 1759 202 283 0 0 chr4 153993226 153993272 -1636848 + (CACG)n Simple_repeat Simple_repeat 1 46 0 5 1759 681 13 0 0 chr4 153995584 153995662 -1634458 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1759 279 229 0 0 chr4 153997137 153997255 -1632865 + (CA)n Simple_repeat Simple_repeat 1 118 0 5 1759 384 223 0 0 chr4 153997271 153997446 -1632674 + (CA)n Simple_repeat Simple_repeat 1 175 0 5 1759 270 0 0 0 chr4 154000487 154000517 -1629603 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1759 429 257 0 0 chr4 154002484 154002663 -1627457 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1759 207 139 0 0 chr4 154003951 154003987 -1626133 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1759 24 0 0 0 chr4 154004804 154004828 -1625292 + AT_rich Low_complexity Low_complexity 1 24 0 4 1759 243 88 0 0 chr4 154005698 154005732 -1624388 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 5 1759 645 190 0 0 chr4 154006431 154006610 -1623510 + GA-rich Low_complexity Low_complexity 2 180 0 6 1759 209 186 0 0 chr4 154006611 154006654 -1623466 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 7 1759 309 109 0 0 chr4 154006665 154006711 -1623409 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1759 432 0 0 0 chr4 154007326 154007374 -1622746 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1760 21 57 0 0 chr4 154010246 154010281 -1619839 + GC_rich Low_complexity Low_complexity 1 35 0 1 1760 61 96 0 0 chr4 154010625 154010812 -1619308 + GC_rich Low_complexity Low_complexity 1 187 0 1 1760 24 32 0 0 chr4 154011044 154011075 -1619045 + GC_rich Low_complexity Low_complexity 1 31 0 1 1760 217 121 0 65 chr4 154011566 154011628 -1618492 + C-rich Low_complexity Low_complexity 4 61 0 1 1760 396 0 0 0 chr4 154013061 154013105 -1617015 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1760 531 0 0 0 chr4 154013105 154013164 -1616956 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1760 323 296 104 22 chr4 154017508 154017643 -1612477 + RMER15 LTR ERVL 427 572 -3 1 1760 462 114 0 0 chr4 154018886 154018956 -1611164 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1760 180 0 0 0 chr4 154018978 154018998 -1611122 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1760 1092 97 11 11 chr4 154019011 154019189 -1610931 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 1 1760 282 299 155 7 chr4 154019531 154019679 -1610441 + L1MB8 LINE L1 5835 6004 -180 2 1760 26 0 0 0 chr4 154019851 154019877 -1610243 + AT_rich Low_complexity Low_complexity 1 26 0 2 1760 351 301 30 8 chr4 154020633 154020767 -1609353 + L1MB8 LINE L1 5843 5979 -199 2 1760 359 152 290 26 chr4 154020980 154021094 -1609026 + B3 SINE B2 4 156 -60 2 1760 261 354 35 9 chr4 154021099 154021213 -1608907 - L2a LINE L2 -14 3412 3296 2 1760 414 286 100 48 chr4 154021305 154021595 -1608525 - HAL1 LINE L1 -833 1674 1370 2 1760 360 309 178 22 chr4 154024144 154024329 -1605791 - ID_B1 SINE B4 -10 214 1 2 1760 393 254 47 110 chr4 154024356 154024512 -1605608 - L1MD LINE L1 -984 5162 5017 2 1760 262 320 59 20 chr4 154024524 154024626 -1605494 + PB1 SINE Alu 19 124 -3 2 1760 648 233 59 64 chr4 154024631 154024833 -1605287 + B3 SINE B2 1 201 -15 2 1760 334 204 138 11 chr4 154024889 154024983 -1605137 - B3 SINE B2 0 216 111 3 1760 298 188 72 0 chr4 154024977 154025046 -1605074 - B1F2 SINE Alu -34 115 42 3 1760 230 156 0 0 chr4 154025047 154025092 -1605028 + (CCCCAG)n Simple_repeat Simple_repeat 6 50 0 3 1760 229 65 0 0 chr4 154025093 154025124 -1604996 - B1_Mus2 SINE Alu -93 54 24 3 1760 1114 124 81 15 chr4 154025195 154025392 -1604728 + MTC LTR MaLR 1 210 -211 3 1760 1318 85 23 0 chr4 154025392 154025568 -1604552 + B2_Mm2 SINE B2 2 181 -14 3 1760 281 182 0 18 chr4 154025605 154025661 -1604459 + B2_Mm2 SINE B2 47 101 -94 3 1760 246 174 0 21 chr4 154025740 154025787 -1604333 + PB1D10 SINE Alu 64 109 -8 3 1760 331 236 50 25 chr4 154025937 154026098 -1604022 + (CATA)n Simple_repeat Simple_repeat 4 168 0 3 1760 536 168 21 21 chr4 154026118 154026258 -1603862 + (CATA)n Simple_repeat Simple_repeat 2 141 0 3 1760 240 86 0 0 chr4 154026304 154026339 -1603781 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1760 413 51 34 0 chr4 154027969 154028028 -1602092 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 4 1760 1169 115 16 6 chr4 154028035 154028218 -1601902 - B2_Mm2 SINE B2 -1 194 10 4 1760 487 249 279 85 chr4 154028853 154029169 -1600951 - MTEa LTR MaLR 0 379 3 4 1760 3807 146 85 19 chr4 154029732 154030381 -1599739 + RLTR17 LTR ERVK 1 692 0 4 1760 1242 68 0 0 chr4 154031476 154031624 -1598496 - B1_Mus1 SINE Alu 0 148 1 4 1760 327 275 0 0 chr4 154032407 154032476 -1597644 + B1F SINE Alu 1 69 -80 4 1760 206 118 0 0 chr4 154032486 154032520 -1597600 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1760 199 266 18 0 chr4 154032623 154032736 -1597384 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1760 734 275 72 31 chr4 154033080 154033366 -1596754 - MLT2D LTR ERVL -55 342 39 4 1760 252 86 0 0 chr4 154033457 154033492 -1596628 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1760 387 0 0 0 chr4 154034761 154034804 -1595316 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1760 180 0 0 0 chr4 154035142 154035162 -1594958 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 5 1760 2976 179 48 37 chr4 154035584 154036152 -1593968 + RMER15 LTR ERVL 2 575 0 5 1760 1149 106 0 0 chr4 154038784 154038964 -1591156 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1760 271 326 0 0 chr4 154039376 154039465 -1590655 + (TGAA)n Simple_repeat Simple_repeat 3 91 0 5 1760 265 269 41 41 chr4 154040262 154040359 -1589761 + B4 SINE B4 195 291 -1 5 1760 312 200 0 0 chr4 154040400 154040485 -1589635 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 1760 746 83 15 15 chr4 154044153 154044288 -1585832 + (TG)n Simple_repeat Simple_repeat 2 136 0 5 1760 266 172 33 46 chr4 154044334 154044486 -1585634 + (TG)n Simple_repeat Simple_repeat 2 151 0 5 1760 415 166 26 103 chr4 154044520 154044715 -1585405 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1760 764 118 22 15 chr4 154044779 154044916 -1585204 + URR1A DNA MER1_type 83 220 -6 5 1760 378 267 38 45 chr4 154044916 154044936 -1585184 - CYRA11_Mm Unknown Y-chromosome -302 315 160 5 1760 465 171 0 0 chr4 154046673 154046761 -1583359 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 6 1760 1045 178 3 7 chr4 154046815 154047119 -1583001 + (TCCA)n Simple_repeat Simple_repeat 1 302 0 6 1760 330 167 0 0 chr4 154048012 154048072 -1582048 + G-rich Low_complexity Low_complexity 2 61 0 6 1760 288 321 92 75 chr4 154050021 154050274 -1579846 + MLT1C LTR MaLR 3 257 -133 6 1760 1201 81 0 0 chr4 154050274 154050422 -1579698 + B1_Mus1 SINE Alu 1 148 0 6 1760 375 41 0 0 chr4 154050431 154050480 -1579640 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 6 1760 271 339 77 102 chr4 154050480 154050607 -1579513 + MLT1C LTR MaLR 266 382 -8 6 1760 686 201 0 45 chr4 154051093 154051249 -1578871 - B1_Mur3 SINE Alu 0 149 1 6 1760 254 262 31 124 chr4 154051249 154051283 -1578837 - MT2B LTR ERVL -452 149 131 6 1760 836 259 155 40 chr4 154053687 154054009 -1576111 - ORR1E LTR MaLR 0 359 1 6 1760 812 226 101 66 chr4 154054294 154054521 -1575599 + ORR1C1-int LTR MaLR 1074 1308 -201 6 1760 1175 115 35 61 chr4 154055483 154055714 -1574406 + ORR1C1-int LTR MaLR 1285 1509 0 6 1760 2389 142 10 29 chr4 154055714 154056099 -1574021 + ORR1C1 LTR MaLR 1 378 0 6 1760 21 36 0 0 chr4 154056495 154056523 -1573597 + GC_rich Low_complexity Low_complexity 1 28 0 6 1760 1702 146 112 97 chr4 154056540 154056951 -1573169 + RMER16 LTR ERVK 117 533 0 7 1760 381 304 65 71 chr4 154057242 154057550 -1572570 + L1M4 LINE L1 909 1214 -5782 7 1760 226 250 0 137 chr4 154057665 154057767 -1572353 + MLT1A1 LTR MaLR 58 145 -263 7 1760 980 222 15 49 chr4 154057805 154057997 -1572123 + B3 SINE B2 20 208 -8 7 1760 882 0 0 0 chr4 154057997 154058095 -1572025 + (GAA)n Simple_repeat Simple_repeat 2 99 0 7 1760 980 222 15 49 chr4 154058095 154058106 -1572014 + B3 SINE B2 209 216 0 7 1760 3713 148 201 52 chr4 154058112 154058897 -1571223 + RMER19B LTR ERVK 1 902 0 7 1760 626 281 50 136 chr4 154059124 154059425 -1570695 + B4A SINE B4 2 276 -16 7 1760 938 271 139 31 chr4 154059482 154060023 -1570097 + L1M4 LINE L1 1198 1796 -5108 7 1760 340 282 0 49 chr4 154060031 154060154 -1569966 + L1M4 LINE L1 1967 2083 -5251 7 1760 428 262 35 141 chr4 154060967 154061093 -1569027 + B3A SINE B2 57 171 -27 7 1760 961 83 12 12 chr4 154061093 154061264 -1568856 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 7 1760 325 262 35 141 chr4 154061264 154061279 -1568841 + B3 SINE B2 169 183 -33 7 1760 421 210 0 22 chr4 154061279 154061459 -1568661 + (CAGAGA)n Simple_repeat Simple_repeat 4 179 0 7 1760 198 156 0 0 chr4 154061455 154061500 -1568620 + GA-rich Low_complexity Low_complexity 2 46 0 8 1760 194 226 0 9 chr4 154061479 154061586 -1568534 + (CAGAGA)n Simple_repeat Simple_repeat 4 109 0 8 1760 660 248 177 14 chr4 154061620 154061964 -1568156 + L1MC4a LINE L1 7161 7560 -322 8 1760 241 370 0 0 chr4 154062587 154062760 -1567360 + GA-rich Low_complexity Low_complexity 2 174 0 8 1760 1127 138 17 6 chr4 154063106 154063281 -1566839 + B2_Mm2 SINE B2 2 178 -17 8 1760 586 290 124 0 chr4 154063314 154063500 -1566620 - B3 SINE B2 -6 210 2 8 1760 637 327 166 22 chr4 154064186 154064589 -1565531 + MLT1E3 LTR MaLR 106 566 -58 8 1760 312 27 0 0 chr4 154065362 154065399 -1564721 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1760 802 179 12 0 chr4 154065711 154065884 -1564236 + (TGGA)n Simple_repeat Simple_repeat 2 176 0 8 1760 293 292 21 15 chr4 154065915 154066262 -1563858 + (TGGA)n Simple_repeat Simple_repeat 1 349 0 8 1760 831 203 10 3 chr4 154066292 154066686 -1563434 + (TGGA)n Simple_repeat Simple_repeat 1 397 0 8 1760 858 249 33 0 chr4 154066971 154067152 -1562968 - B3A SINE B2 -11 187 1 8 1760 208 290 0 0 chr4 154068172 154068234 -1561886 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1760 968 130 6 0 chr4 154069520 154069681 -1560439 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 9 1760 908 147 5 0 chr4 154069725 154069959 -1560161 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 9 1760 387 0 0 0 chr4 154070147 154070190 -1559930 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 9 1760 192 340 71 10 chr4 154071655 154071806 -1558314 - MIRb SINE MIR -88 180 18 9 1760 408 318 133 30 chr4 154073651 154073914 -1556206 + B4A SINE B4 1 290 -2 9 1760 216 0 0 0 chr4 154073931 154073955 -1556165 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 9 1760 2393 160 52 5 chr4 154073977 154074379 -1555741 + MTC LTR MaLR 1 421 0 9 1760 260 239 202 0 chr4 154074475 154074584 -1555536 + Tigger7 DNA MER2_type 2350 2480 -11 9 1760 589 191 0 9 chr4 154075706 154075817 -1554303 + MER121 Unknown Unknown 109 218 -194 9 1760 183 209 70 56 chr4 154083472 154083543 -1546577 + L3 LINE CR1 2078 2149 -2340 9 1760 383 319 216 12 chr4 154085734 154085975 -1544145 + B4A SINE B4 3 292 0 1 1760 302 234 0 9 chr4 154085978 154086086 -1544034 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 1760 474 280 193 29 chr4 154086331 154086673 -1543447 - MLT1C LTR MaLR -7 460 63 1 1760 391 294 151 32 chr4 154087098 154087122 -1542998 - B4 SINE B4 -84 208 181 1 1760 243 0 0 0 chr4 154087122 154087149 -1542971 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1760 909 27 0 0 chr4 154087149 154087260 -1542860 + (GA)n Simple_repeat Simple_repeat 1 112 0 1 1760 406 288 148 19 chr4 154087260 154087420 -1542700 - B4A SINE B4 -112 180 1 1 1760 204 340 72 31 chr4 154087467 154087564 -1542556 + L2b LINE L2 3272 3372 -3 1 1760 430 324 29 11 chr4 154087591 154087766 -1542354 + (TGGG)n Simple_repeat Simple_repeat 2 179 0 1 1760 372 287 47 12 chr4 154087731 154087900 -1542220 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 1 1760 224 277 12 0 chr4 154087920 154088003 -1542117 + (TGGA)n Simple_repeat Simple_repeat 1 84 0 1 1760 297 75 0 0 chr4 154088455 154088495 -1541625 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1760 1429 64 43 0 chr4 154088716 154088903 -1541217 + B2_Mm2 SINE B2 1 195 0 1 1760 192 310 0 17 chr4 154089312 154089371 -1540749 + L2c LINE L2 3274 3331 -56 1 1760 280 372 102 6 chr4 154089719 154089876 -1540244 - MLT1B LTR MaLR -218 172 1 1 1760 271 205 26 0 chr4 154091754 154091832 -1538288 - L1MEe LINE L1 -3340 2806 2727 1 1760 665 211 62 42 chr4 154091906 154092099 -1538021 - B3A SINE B2 -1 197 1 1 1760 592 338 34 51 chr4 154092121 154092355 -1537765 - L1MEe LINE L1 -3493 2653 2424 1 1760 1777 221 156 24 chr4 154092382 154092850 -1537270 - Lx6 LINE L1 -19 7441 6912 1 1760 3747 197 56 29 chr4 154092857 154093747 -1536373 - Lx6 LINE L1 -810 6650 5737 1 1760 539 140 0 95 chr4 154093786 154093912 -1536208 - L1Md_F2 LINE L1 0 6582 6469 1 1760 270 0 0 0 chr4 154094312 154094342 -1535778 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1760 250 397 88 16 chr4 154094342 154094647 -1535473 + MLT2D LTR ERVL 59 385 -29 1 1760 5806 158 63 27 chr4 154094679 154095903 -1534217 - L1_Mur3 LINE L1 -132 5748 4481 1 1760 248 235 0 56 chr4 154095921 154095993 -1534127 + CT-rich Low_complexity Low_complexity 2 69 0 1 1760 545 335 95 81 chr4 154095993 154096804 -1533316 - L1MEe LINE L1 -3752 2394 1580 1 1760 398 319 69 11 chr4 154097378 154097654 -1532466 - L1MEe LINE L1 -5040 1202 911 1 1760 8713 6 0 0 chr4 154097688 154098684 -1531436 - L1Md_T LINE L1 0 6582 5587 1 1760 403 317 128 50 chr4 154098708 154098927 -1531193 - L1MEe LINE L1 -5357 885 650 1 1760 4494 182 85 21 chr4 154099050 154099947 -1530173 - RMER19B LTR ERVK -12 890 1 1 1760 342 0 0 0 chr4 154100458 154100496 -1529624 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1 1760 234 322 125 51 chr4 154102332 154102643 -1527477 - MLT1C LTR MaLR -126 341 8 1 1760 263 182 0 29 chr4 154102886 154102954 -1527166 + G-rich Low_complexity Low_complexity 4 69 0 1 1760 3223 69 7 2 chr4 154103791 154104210 -1525910 - BGLII LTR ERVK 0 421 1 1 1760 261 57 0 0 chr4 154107607 154107642 -1522478 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1760 493 217 5 5 chr4 154107787 154108016 -1522104 + (CA)n Simple_repeat Simple_repeat 1 229 0 1 1760 185 196 0 19 chr4 154108131 154108183 -1521937 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1760 717 232 5 0 chr4 154108185 154108780 -1521340 + (CA)n Simple_repeat Simple_repeat 1 598 0 1 1760 386 337 6 11 chr4 154108802 154108982 -1521138 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1760 326 276 0 6 chr4 154108993 154109168 -1520952 + (CA)n Simple_repeat Simple_repeat 1 174 0 1 1760 300 137 0 0 chr4 154111540 154111591 -1518529 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1760 848 105 13 13 chr4 154112387 154112541 -1517579 + (TG)n Simple_repeat Simple_repeat 1 154 0 1 1760 203 250 0 0 chr4 154113188 154113228 -1516892 + polypyrimidine Low_complexity Low_complexity 5 44 0 1 1760 657 308 5 5 chr4 154114824 154115010 -1515110 - MLT1B LTR MaLR -204 186 1 1 1760 194 343 49 5 chr4 154116043 154116166 -1513954 - MIRm SINE MIR -137 139 6 1 1760 995 54 80 7 chr4 154116571 154116721 -1513399 + B2_Mm2 SINE B2 1 161 -34 1 1760 200 34 0 33 chr4 154116721 154116751 -1513369 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1 1760 652 185 164 23 chr4 154116751 154116777 -1513343 + B3 SINE B2 176 202 -14 1 1760 225 300 117 31 chr4 154118909 154119105 -1511015 + MLT1B LTR MaLR 178 390 0 1 1760 404 276 120 56 chr4 154121164 154121306 -1508814 + RSINE1 SINE B4 14 164 -1 1 1760 280 193 11 22 chr4 154121314 154121404 -1508716 + GA-rich Low_complexity Low_complexity 2 90 0 1 1760 291 259 187 9 chr4 154122184 154122325 -1507795 + B3 SINE B2 44 192 -3 1 1760 186 43 0 0 chr4 154122334 154122357 -1507763 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 1 1760 4637 133 82 12 chr4 154122529 154123361 -1506759 - RMER19B LTR ERVK -12 890 1 1 1760 307 304 25 0 chr4 154126960 154127039 -1503081 + ID4 SINE ID 3 83 0 1 1760 333 0 0 0 chr4 154127892 154127929 -1502191 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1760 802 168 180 21 chr4 154129817 154130006 -1500114 + URR1B DNA MER1_type 7 225 0 1 1760 236 309 9 9 chr4 154130332 154130443 -1499677 - RMER12 LTR ERVK -476 846 736 1 1760 899 174 7 0 chr4 154130449 154130901 -1499219 + (CA)n Simple_repeat Simple_repeat 1 455 0 1 1760 398 312 158 33 chr4 154133313 154133528 -1496592 - MLT1B LTR MaLR -88 302 61 1 1760 190 196 89 0 chr4 154134258 154134314 -1495806 - MIRc SINE MIR -41 227 167 1 1760 248 298 93 62 chr4 154135877 154136070 -1494050 - LTR33A_ LTR ERVL -275 256 58 1 1760 26 0 0 0 chr4 154136433 154136459 -1493661 + AT_rich Low_complexity Low_complexity 1 26 0 1 1760 1142 209 163 45 chr4 154136528 154136859 -1493261 - ORR1D2 LTR MaLR 0 370 1 1 1760 255 208 27 14 chr4 154136937 154137010 -1493110 + ORR1D1 LTR MaLR 1 74 -300 1 1760 251 231 78 162 chr4 154137116 154137307 -1492813 + ORR1D1 LTR MaLR 200 374 -5 1 1760 320 342 103 21 chr4 154138614 154138657 -1491463 - MLT1D LTR MaLR -16 489 437 1 1760 432 0 0 0 chr4 154138657 154138705 -1491415 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1760 320 342 103 21 chr4 154138705 154138855 -1491265 - MLT1D LTR MaLR -69 436 280 1 1760 377 168 30 0 chr4 154138920 154139051 -1491069 + CT-rich Low_complexity Low_complexity 2 136 0 1 1760 808 103 29 0 chr4 154139057 154139231 -1490889 + (TC)n Simple_repeat Simple_repeat 1 179 0 1 1760 216 113 48 16 chr4 154139272 154139335 -1490785 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 1 1760 435 325 84 72 chr4 154140004 154140339 -1489781 + MLT1B LTR MaLR 35 373 -17 1 1761 2159 82 0 65 chr4 154142791 154143132 -1486988 - ORR1A2 LTR MaLR -8 319 1 1 1761 492 18 0 0 chr4 154143551 154143608 -1486512 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1761 393 22 0 0 chr4 154143608 154143653 -1486467 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1761 761 199 6 0 chr4 154144426 154144597 -1485523 + (TG)n Simple_repeat Simple_repeat 2 173 0 1 1761 274 331 29 11 chr4 154144599 154144773 -1485347 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 1 1761 558 29 0 0 chr4 154148839 154148907 -1481213 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1761 416 191 11 0 chr4 154148952 154149046 -1481074 + GA-rich Low_complexity Low_complexity 2 96 0 1 1761 954 174 0 0 chr4 154150752 154151275 -1478845 + (CA)n Simple_repeat Simple_repeat 1 523 0 1 1761 296 253 24 12 chr4 154151275 154151359 -1478761 + ID_B1 SINE B4 97 181 -43 1 1761 254 311 62 80 chr4 154151359 154151387 -1478733 + PB1 SINE Alu 16 125 -2 1 1761 245 352 0 0 chr4 154151397 154151485 -1478635 + BC1_Mm scRNA scRNA 16 103 -49 1 1761 757 92 0 16 chr4 154151958 154152080 -1478040 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 1 1761 297 0 0 0 chr4 154152617 154152650 -1477470 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1761 288 0 0 0 chr4 154152799 154152831 -1477289 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1761 711 208 141 11 chr4 154152831 154153016 -1477104 - B3 SINE B2 -7 209 1 1 1761 21 0 0 0 chr4 154153022 154153043 -1477077 + AT_rich Low_complexity Low_complexity 1 21 0 1 1761 766 240 29 77 chr4 154153043 154153251 -1476869 - B3A SINE B2 0 198 1 1 1761 4023 95 75 2 chr4 154153310 154153869 -1476251 + MT2B LTR ERVL 1 600 -1 1 1761 429 20 0 0 chr4 154154754 154154804 -1475316 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1761 22 0 0 0 chr4 154155907 154155929 -1474191 + GC_rich Low_complexity Low_complexity 1 22 0 1 1761 941 258 81 34 chr4 154158287 154158644 -1471476 + ORR1D1 LTR MaLR 1 374 0 1 1761 256 328 33 8 chr4 154163688 154163808 -1466312 + MIR SINE MIR 139 261 -1 1 1761 513 135 0 0 chr4 154163808 154163897 -1466223 + (CCA)n Simple_repeat Simple_repeat 1 89 0 1 1761 206 215 47 81 chr4 154166906 154166992 -1463128 + L2b LINE L2 3080 3162 -213 1 1761 198 0 0 0 chr4 154167817 154167839 -1462281 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1761 225 167 0 0 chr4 154168693 154168747 -1461373 + (CACCAT)n Simple_repeat Simple_repeat 5 58 0 1 1761 1196 68 0 20 chr4 154169170 154169320 -1460800 + B1_Mus1 SINE Alu 2 148 0 1 1761 337 290 10 39 chr4 154170845 154170949 -1459171 + PB1D10 SINE Alu 1 101 -16 1 1761 1011 40 0 0 chr4 154171923 154172047 -1458073 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 1761 295 271 152 23 chr4 154173206 154173338 -1456782 - L1MC4a LINE L1 -919 6963 6815 1 1761 234 0 0 0 chr4 154173519 154173545 -1456575 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1761 204 338 0 0 chr4 154173576 154173653 -1456467 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 1 1761 879 292 36 4 chr4 154174070 154174345 -1455775 + B4A SINE B4 1 284 -8 1 1761 576 277 159 45 chr4 154176873 154177187 -1452933 + Charlie19a DNA Charlie 8 357 -29 1 1761 668 316 119 0 chr4 154177260 154177504 -1452616 + B4A SINE B4 20 292 0 1 1761 777 177 0 0 chr4 154177506 154177758 -1452362 + (CA)n Simple_repeat Simple_repeat 1 252 0 1 1761 786 161 0 5 chr4 154177772 154178189 -1451931 + (CA)n Simple_repeat Simple_repeat 1 414 0 1 1761 252 149 0 0 chr4 154178614 154178661 -1451459 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1761 275 186 0 189 chr4 154179350 154179392 -1450728 - L1MB2 LINE L1 -6 6177 6153 1 1761 983 212 81 0 chr4 154179392 154179590 -1450530 + B3 SINE B2 2 215 -1 2 1761 278 186 0 189 chr4 154179590 154179653 -1450467 - L1MB2 LINE L1 -31 6152 6091 1 1761 447 365 14 0 chr4 154179656 154179801 -1450319 + B1F1 SINE Alu 2 148 -1 2 1761 366 201 97 0 chr4 154179806 154179910 -1450210 - L1MB2 LINE L1 -80 6103 5990 1 1761 503 336 79 35 chr4 154179944 154180311 -1449809 - L1MB2 LINE L1 -309 5862 5480 1 1761 633 114 11 54 chr4 154181940 154182125 -1447995 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2 1761 270 239 14 0 chr4 154182152 154182223 -1447897 + GA-rich Low_complexity Low_complexity 1 72 0 2 1761 229 300 86 0 chr4 154182226 154182296 -1447824 - ORR1E LTR MaLR -283 76 1 2 1761 375 224 0 13 chr4 154182407 154182484 -1447636 - B4A SINE B4 -214 78 3 2 1761 977 231 24 10 chr4 154182499 154182832 -1447288 + L1M2 LINE L1 5107 5440 -851 2 1761 1766 177 144 0 chr4 154183231 154183565 -1446555 + ORR1C2 LTR MaLR 1 382 -2 2 1761 292 200 67 0 chr4 154184131 154184206 -1445914 - Charlie25 DNA MER1_type -2347 177 98 2 1761 303 28 0 0 chr4 154184208 154184244 -1445876 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1761 246 215 8 86 chr4 154184942 154185059 -1445061 + (CCCTG)n Simple_repeat Simple_repeat 3 110 0 2 1761 268 346 22 51 chr4 154186016 154186153 -1443967 - B4A SINE B4 -152 140 8 2 1761 455 358 12 0 chr4 154186248 154186413 -1443707 + MER82 DNA MER2_type 487 653 0 2 1761 276 30 0 0 chr4 154187183 154187216 -1442904 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 2 1761 484 306 125 4 chr4 154188187 154188443 -1441677 + RCHARR1 DNA MER1_type 80 366 -608 2 1761 424 312 21 0 chr4 154188449 154188590 -1441530 + ID_B1 SINE B4 81 224 0 2 1761 1321 247 30 70 chr4 154188533 154188964 -1441156 + RCHARR1 DNA MER1_type 334 747 -227 2 1761 676 274 78 48 chr4 154188968 154189236 -1440884 + B4A SINE B4 1 276 -16 2 1761 227 269 0 19 chr4 154189249 154189302 -1440818 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1761 656 179 124 101 chr4 154189305 154189523 -1440597 + RCHARR1 DNA MER1_type 746 968 -6 2 1761 430 297 109 87 chr4 154189530 154189591 -1440529 - MLT1A1 LTR MaLR -96 269 209 2 1761 3067 78 10 5 chr4 154189591 154189988 -1440132 - MTB LTR MaLR -1 399 1 2 1761 430 280 133 80 chr4 154189988 154190193 -1439927 - MLT1A1 LTR MaLR -188 220 1 2 1761 207 65 65 0 chr4 154190194 154190240 -1439880 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1761 2312 129 18 0 chr4 154190552 154190892 -1439228 + ORR1A1 LTR MaLR 1 346 0 2 1761 184 261 0 0 chr4 154193313 154193359 -1436761 + L2c LINE L2 3339 3384 -3 2 1761 192 175 48 0 chr4 154193438 154193501 -1436619 + CT-rich Low_complexity Low_complexity 1 66 0 2 1761 237 229 33 0 chr4 154193681 154193742 -1436378 + MER53 DNA hAT 38 100 -93 2 1761 213 220 0 0 chr4 154194033 154194083 -1436037 + CT-rich Low_complexity Low_complexity 1 50 0 2 1761 391 213 378 0 chr4 154194166 154194396 -1435724 - Lx7 LINE L1 -388 7308 6992 2 1761 1421 270 20 59 chr4 154194454 154194910 -1435210 + Lx7 LINE L1 6261 6698 -998 2 1761 784 236 89 21 chr4 154196000 154196281 -1433839 + MLT1B LTR MaLR 19 318 -72 2 1761 194 150 25 0 chr4 154196691 154196731 -1433389 + (CCCTAG)n Simple_repeat Simple_repeat 6 46 0 2 1761 1324 233 123 19 chr4 154196983 154197350 -1432770 - MTD LTR MaLR -14 405 1 2 1761 320 321 9 19 chr4 154197666 154197774 -1432346 - MLT2B4 LTR ERVL -175 381 275 2 1761 375 300 42 0 chr4 154197950 154198070 -1432050 + MLT1D LTR MaLR 80 204 -301 2 1761 469 225 44 18 chr4 154198075 154198188 -1431932 + PB1D10 SINE Alu 1 116 -1 2 1761 997 203 84 25 chr4 154198193 154198395 -1431725 + B3 SINE B2 3 216 0 2 1761 211 93 23 23 chr4 154198406 154198450 -1431670 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 2 1761 1191 49 7 0 chr4 154198494 154198638 -1431482 + B1_Mus2 SINE Alu 2 146 -1 2 1761 216 175 0 0 chr4 154198639 154198702 -1431418 + A-rich Low_complexity Low_complexity 1 63 0 2 1761 312 273 39 62 chr4 154198765 154198899 -1431221 + MLT1D LTR MaLR 251 419 -48 2 1761 348 24 0 0 chr4 154198944 154198985 -1431135 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1761 342 293 0 0 chr4 154200702 154200777 -1429343 - B3A SINE B2 -42 156 82 2 1761 898 123 7 0 chr4 154200869 154201007 -1429113 - B1_Mus1 SINE Alu 0 148 10 2 1761 1232 107 79 0 chr4 154202640 154202799 -1427321 + B2_Mm2 SINE B2 3 161 -34 2 1761 297 0 0 0 chr4 154202799 154202832 -1427288 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1761 1232 107 79 0 chr4 154202832 154202850 -1427270 + B2_Mm2 SINE B2 162 192 -3 2 1761 1167 70 0 0 chr4 154203609 154203766 -1426354 - B2_Mm2 SINE B2 -38 157 1 2 1761 843 10 0 0 chr4 154205680 154205776 -1424344 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1761 842 54 9 0 chr4 154206917 154207029 -1423091 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 2 1761 1410 99 0 0 chr4 154208139 154208588 -1421532 + (GGAGA)n Simple_repeat Simple_repeat 1 449 0 2 1761 858 20 0 0 chr4 154209321 154209421 -1420699 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 2 1761 1572 39 0 0 chr4 154209422 154209600 -1420520 - B2_Mm1a SINE B2 -14 179 2 2 1761 220 172 35 0 chr4 154213787 154213845 -1416275 + (CTGGGG)n Simple_repeat Simple_repeat 6 65 0 2 1761 195 170 20 78 chr4 154213845 154213896 -1416224 - L2a LINE L2 -57 3369 3322 2 1761 772 193 7 0 chr4 154227108 154227243 -1402877 + B1_Mus1 SINE Alu 1 136 -12 2 1761 29 0 0 0 chr4 154227247 154227276 -1402844 + AT_rich Low_complexity Low_complexity 1 29 0 2 1761 960 116 122 50 chr4 154227318 154227499 -1402621 + B2_Mm2 SINE B2 1 194 -1 2 1761 831 75 33 16 chr4 154227551 154227673 -1402447 - B1_Mm SINE Alu 0 147 24 2 1761 361 319 124 42 chr4 154227692 154227885 -1402235 + L1M5 LINE L1 5180 5388 -758 2 1761 462 240 47 31 chr4 154228468 154228511 -1401609 - ID_B1 SINE B4 -2 222 92 2 1761 668 23 0 0 chr4 154228511 154228597 -1401523 - B1_Mm SINE Alu -51 96 11 2 1761 297 288 0 14 chr4 154228700 154228774 -1401346 + ID4 SINE ID 4 76 -7 2 1761 316 208 262 16 chr4 154228784 154228906 -1401214 + L1M4b LINE L1 1626 1777 -5557 2 1761 669 176 133 30 chr4 154230734 154230869 -1399251 + B1F SINE Alu 1 149 0 2 1761 519 286 117 12 chr4 154230906 154231069 -1399051 + B3A SINE B2 1 180 -18 2 1761 701 223 122 5 chr4 154231098 154231287 -1398833 - B3 SINE B2 -4 212 2 2 1761 912 179 0 0 chr4 154235731 154235871 -1394249 - B1_Mus1 SINE Alu -6 142 3 2 1761 374 176 0 105 chr4 154236491 154236624 -1393496 + CT-rich Low_complexity Low_complexity 3 121 0 2 1761 828 170 86 59 chr4 154236812 154236989 -1393131 - RMER17C LTR ERVK 0 410 232 2 1761 516 32 0 0 chr4 154236989 154237051 -1393069 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1761 828 190 71 36 chr4 154237051 154237177 -1392943 - RMER17C LTR ERVK -179 231 36 2 1761 422 55 0 0 chr4 154237177 154237232 -1392888 - ORR1A2 LTR MaLR 0 326 272 2 1761 782 94 23 8 chr4 154237228 154237356 -1392764 - B2_Mm2 SINE B2 -23 172 43 2 1761 1700 100 95 18 chr4 154237325 154237610 -1392510 - ORR1A2 LTR MaLR -20 307 1 2 1761 274 119 0 0 chr4 154237610 154237650 -1392470 - RMER17C LTR ERVK -370 40 1 2 1761 690 307 111 22 chr4 154240945 154241261 -1388859 + MLT1A0 LTR MaLR 1 344 -21 2 1761 394 307 10 102 chr4 154242091 154242287 -1387833 + B4 SINE B4 5 182 -110 2 1761 1260 239 133 12 chr4 154242569 154242900 -1387220 + MTEb LTR MaLR 3 373 -6 2 1761 224 59 29 0 chr4 154243887 154243921 -1386199 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1761 339 208 38 0 chr4 154243922 154244008 -1386112 - B1F1 SINE Alu -19 101 11 2 1761 270 347 7 71 chr4 154243930 154244085 -1386035 - MT2B2 LTR ERVL -338 246 102 2 1761 216 130 0 0 chr4 154244259 154244305 -1385815 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1761 192 97 0 0 chr4 154245817 154245848 -1384272 + (CTG)n Simple_repeat Simple_repeat 1 31 0 2 1761 1343 36 2 31 chr4 154246611 154247221 -1382899 + (GGAA)n Simple_repeat Simple_repeat 1 591 0 2 1761 418 231 357 23 chr4 154248103 154248364 -1381756 - MTE2b LTR MaLR -14 365 19 2 1761 2073 155 11 3 chr4 154248547 154248903 -1381217 - RLTR15 LTR ERVK 0 359 1 2 1761 324 248 90 21 chr4 154248904 154249048 -1381072 - MYSERV16_I-int LTR ERVK 0 2326 2173 2 1761 1309 133 0 35 chr4 154249067 154249269 -1380851 - B2_Mm2 SINE B2 0 195 1 2 1761 207 0 0 0 chr4 154249377 154249400 -1380720 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1761 1095 82 0 0 chr4 154249400 154249535 -1380585 - B1_Mus1 SINE Alu -9 139 5 2 1761 1197 201 0 28 chr4 154249589 154249804 -1380316 + B3 SINE B2 3 211 -5 2 1761 293 265 29 0 chr4 154249870 154249938 -1380182 - RSINE1 SINE B4 -30 135 66 2 1761 180 0 0 0 chr4 154249938 154249958 -1380162 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1761 880 83 68 0 chr4 154249985 154250118 -1380002 - B1_Mm SINE Alu -1 146 5 2 1761 333 304 33 26 chr4 154250488 154250640 -1379480 - RSINE1 SINE B4 0 165 13 2 1761 235 309 72 0 chr4 154250775 154250872 -1379248 + Cheshire DNA MER1_type 173 276 -2144 2 1761 275 384 88 6 chr4 154251037 154251197 -1378923 + MIR SINE MIR 58 230 -32 2 1761 539 220 77 35 chr4 154251376 154251575 -1378545 - B3A SINE B2 -2 214 1 2 1761 279 326 77 56 chr4 154251750 154251777 -1378343 - B1F SINE Alu 0 149 123 2 1761 387 0 0 0 chr4 154251777 154251820 -1378300 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1761 294 50 0 0 chr4 154251820 154251859 -1378261 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1761 279 326 77 56 chr4 154251859 154251973 -1378147 - B1F SINE Alu -27 122 5 2 1761 479 256 63 16 chr4 154251860 154251987 -1378133 - ID_B1 SINE B4 -21 203 71 2 1761 779 237 14 45 chr4 154252045 154252266 -1377854 + ORR1E LTR MaLR 9 222 -137 2 1761 630 0 0 0 chr4 154252268 154252338 -1377782 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1761 385 214 59 27 chr4 154252364 154252507 -1377613 + B4 SINE B4 3 279 -13 2 1761 282 248 0 0 chr4 154252916 154253025 -1377095 + GA-rich Low_complexity Low_complexity 1 109 0 2 1761 597 64 0 0 chr4 154253402 154253480 -1376640 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 1761 438 106 7 57 chr4 154253481 154253621 -1376499 + (TG)n Simple_repeat Simple_repeat 2 134 0 3 1761 353 162 44 48 chr4 154253693 154253784 -1376336 - B4A SINE B4 -44 248 162 3 1761 284 205 153 24 chr4 154253858 154253894 -1376226 + B3 SINE B2 1 47 -169 3 1761 1376 90 27 0 chr4 154253894 154254082 -1376038 - B2_Mm1a SINE B2 0 193 1 3 1761 284 205 153 24 chr4 154254082 154254130 -1375990 + B3 SINE B2 48 95 -121 3 1761 894 255 40 16 chr4 154254297 154254548 -1375572 - B4A SINE B4 0 292 36 3 1761 250 299 15 0 chr4 154254785 154254852 -1375268 - ID_B1 SINE B4 -41 183 116 3 1761 208 105 0 50 chr4 154256466 154256506 -1373614 + G-rich Low_complexity Low_complexity 4 41 0 3 1761 22 0 0 0 chr4 154258561 154258583 -1371537 + AT_rich Low_complexity Low_complexity 1 22 0 3 1761 1628 21 11 11 chr4 154258585 154258774 -1371346 - B2_Mm1a SINE B2 -3 190 2 3 1761 315 0 0 0 chr4 154259384 154259419 -1370701 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1761 243 0 0 0 chr4 154260573 154260600 -1369520 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 3 1761 1169 84 6 0 chr4 154260600 154260755 -1369365 - B2_Mm2 SINE B2 -39 156 2 3 1761 780 206 30 60 chr4 154262453 154262654 -1367466 + B3A SINE B2 4 198 0 3 1761 640 152 19 0 chr4 154262677 154262782 -1367338 + PB1D9 SINE Alu 1 107 -13 3 1761 252 0 0 0 chr4 154262782 154262810 -1367310 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1761 919 0 18 0 chr4 154262810 154262921 -1367199 + (CA)n Simple_repeat Simple_repeat 2 114 0 3 1761 210 333 0 42 chr4 154263068 154263140 -1366980 + ID2 SINE ID 15 83 0 3 1761 279 0 0 0 chr4 154263268 154263299 -1366821 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1761 1113 66 0 0 chr4 154263299 154263436 -1366684 - B1_Mus1 SINE Alu -10 138 2 3 1761 243 0 0 0 chr4 154263805 154263832 -1366288 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1761 198 0 0 0 chr4 154266154 154266176 -1363944 + (CCCG)n Simple_repeat Simple_repeat 2 23 0 3 1761 264 267 114 10 chr4 154266234 154266364 -1363756 - MIR3 SINE MIR -33 229 82 3 1762 910 230 11 5 chr4 154273993 154274181 -1355939 + B3 SINE B2 1 189 -27 3 1762 311 253 62 21 chr4 154274253 154274350 -1355770 + B4A SINE B4 192 292 0 3 1762 2332 135 65 3 chr4 154274974 154275345 -1354775 + ORR1B1 LTR MaLR 1 394 0 3 1762 279 274 115 68 chr4 154275445 154275637 -1354483 - MLT1I LTR MaLR -19 392 192 3 1762 1987 189 17 54 chr4 154276001 154276410 -1353710 - ORR1B1 LTR MaLR 0 394 1 3 1762 589 269 123 88 chr4 154276633 154276876 -1353244 - RLTR18B LTR ERVK -117 499 111 3 1762 317 80 0 0 chr4 154277036 154277086 -1353034 - MYSERV-int LTR ERVK -1158 5392 5343 3 1762 5749 124 17 21 chr4 154277092 154277965 -1352155 + Lx3B LINE L1 6100 6969 -4 3 1762 1149 62 21 0 chr4 154277985 154278129 -1351991 + B1_Mm SINE Alu 1 147 0 3 1762 213 175 0 0 chr4 154278151 154278191 -1351929 + GA-rich Low_complexity Low_complexity 2 41 0 3 1762 210 71 0 0 chr4 154278196 154278224 -1351896 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 3 1762 317 265 94 46 chr4 154278302 154278494 -1351626 - RMER4A LTR ERVK -28 557 246 3 1762 3858 247 90 39 chr4 154278494 154278736 -1351384 - MYSERV-int LTR ERVK -1445 5105 4810 3 1762 2717 161 16 18 chr4 154278736 154279242 -1350878 + RLTR16 LTR ERVK 1 505 0 3 1762 3858 247 90 39 chr4 154279242 154280089 -1350031 - MYSERV-int LTR ERVK -1741 4809 3936 3 1762 2232 171 80 86 chr4 154280089 154280625 -1349495 - RMER16 LTR ERVK 0 533 1 3 1762 3858 247 90 39 chr4 154280625 154280799 -1349321 - MYSERV-int LTR ERVK -2615 3935 3776 3 1762 302 316 168 55 chr4 154280833 154281038 -1349082 - HAL1-2a_MD LINE L1 -1607 1417 1178 3 1762 1128 90 14 0 chr4 154281038 154281183 -1348937 - B1_Mus2 SINE Alu 0 147 1 3 1762 302 316 168 55 chr4 154281183 154281305 -1348815 - HAL1-2a_MD LINE L1 -1847 1177 1053 3 1762 1259 48 0 0 chr4 154281319 154281466 -1348654 + B1_Mus1 SINE Alu 2 148 0 3 1762 192 40 0 0 chr4 154281466 154281491 -1348629 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1762 183 80 0 0 chr4 154282658 154282683 -1347437 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1762 1153 62 0 7 chr4 154282685 154282832 -1347288 - B1_Mm SINE Alu 0 147 2 3 1762 562 253 80 48 chr4 154282929 154283175 -1346945 - RLTR12B LTR ERVK -209 236 3 3 1762 641 258 94 35 chr4 154283178 154283230 -1346890 - MYSERV-int LTR ERVK -2353 3784 3733 3 1762 201 39 0 0 chr4 154283230 154283256 -1346864 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1762 641 258 94 35 chr4 154283256 154283308 -1346812 - MYSERV-int LTR ERVK -2405 3732 3673 3 1762 3532 43 33 9 chr4 154283308 154283734 -1346386 + RLTR10C LTR ERVK 1 436 0 3 1762 641 258 94 35 chr4 154283734 154283829 -1346291 - MYSERV-int LTR ERVK -2465 3672 3574 3 1762 1939 203 52 151 chr4 154284339 154285076 -1345044 + RMER12 LTR ERVK 609 1272 -50 3 1762 368 258 0 8 chr4 154286050 154286319 -1343801 + (TG)n Simple_repeat Simple_repeat 1 266 0 3 1762 411 250 0 0 chr4 154286378 154286558 -1343562 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1762 666 278 12 6 chr4 154286574 154286737 -1343383 - RSINE1 SINE B4 0 165 2 3 1762 297 0 0 0 chr4 154287058 154287091 -1343029 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1762 594 334 88 19 chr4 154288055 154288363 -1341757 - MER74A LTR ERVL 0 558 230 3 1762 27 0 0 0 chr4 154289258 154289285 -1340835 + AT_rich Low_complexity Low_complexity 1 27 0 3 1762 697 285 222 3 chr4 154289366 154289672 -1340448 + MTEa LTR MaLR 6 378 -1 3 1762 1450 84 5 0 chr4 154291091 154291282 -1338838 + B2_Mm1a SINE B2 1 192 -1 3 1762 1226 35 0 0 chr4 154291286 154291427 -1338693 + B1_Mm SINE Alu 1 141 -6 3 1762 195 42 0 0 chr4 154291429 154291453 -1338667 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 3 1762 1556 191 113 63 chr4 154291514 154291687 -1338433 + ORR1C2 LTR MaLR 1 185 -199 3 1762 216 67 0 0 chr4 154291687 154291717 -1338403 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1762 1556 191 113 63 chr4 154291717 154291849 -1338271 + ORR1C2 LTR MaLR 186 318 -66 3 1762 252 0 0 0 chr4 154291849 154291877 -1338243 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 3 1762 1556 191 113 63 chr4 154291877 154291934 -1338186 + ORR1C2 LTR MaLR 319 382 -2 3 1762 1121 96 0 0 chr4 154292491 154292637 -1337483 - B1_Mus2 SINE Alu 0 147 2 3 1762 517 288 44 94 chr4 154292674 154292877 -1337243 + B4A SINE B4 4 196 -96 3 1762 419 209 120 30 chr4 154292908 154293041 -1337079 - RMER12B LTR ERVK 0 1404 1260 3 1762 3834 80 22 2 chr4 154293191 154293779 -1336341 + MusHAL1 LINE L1 254 853 -1859 3 1762 1192 50 0 0 chr4 154293779 154293920 -1336200 + B1_Mus1 SINE Alu 3 143 -5 3 1762 690 105 0 0 chr4 154293923 154294028 -1336092 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1762 488 75 0 0 chr4 154294029 154294109 -1336011 + L1_Mus2 LINE L1 2034 2113 -3770 3 1762 7724 61 6 4 chr4 154294108 154295562 -1334558 + L1_Mus2 LINE L1 5106 6566 0 3 1762 1216 68 0 0 chr4 154296034 154296181 -1333939 + B1_Mus2 SINE Alu 1 147 0 3 1762 213 39 0 0 chr4 154296181 154296207 -1333913 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1762 182 191 21 0 chr4 154297128 154297175 -1332945 + GA-rich Low_complexity Low_complexity 4 51 0 3 1762 257 317 0 24 chr4 154297651 154297735 -1332385 + GA-rich Low_complexity Low_complexity 2 83 0 3 1762 2464 112 25 3 chr4 154297943 154298300 -1331820 + ORR1B2 LTR MaLR 3 367 0 3 1762 226 233 53 40 chr4 154302913 154302989 -1327131 + RMER16 LTR ERVK 1 77 -456 3 1762 262 275 12 48 chr4 154302982 154303066 -1327054 + RMER16 LTR ERVK 266 346 -187 3 1762 675 234 45 126 chr4 154303073 154303342 -1326778 + RMER16 LTR ERVK 287 533 0 3 1762 2050 157 81 3 chr4 154303645 154304029 -1326091 - MTC LTR MaLR -2 419 6 3 1762 3288 39 37 0 chr4 154304545 154304927 -1325193 + MTA_Mm LTR MaLR 1 396 0 3 1762 9535 35 0 0 chr4 154304927 154306025 -1324095 + MTA_Mm-int LTR MaLR 1 1098 0 3 1762 3549 30 0 0 chr4 154306025 154306421 -1323699 + MTA_Mm LTR MaLR 1 396 0 3 1762 465 237 104 0 chr4 154309109 154309244 -1320876 + B1F2 SINE Alu 1 149 0 3 1762 839 186 14 26 chr4 154310296 154310460 -1319660 + B3A SINE B2 3 161 -34 3 1762 396 0 0 0 chr4 154310460 154310504 -1319616 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1762 515 216 61 86 chr4 154310504 154310537 -1319583 + B2_Mm2 SINE B2 162 194 -1 3 1762 234 274 140 9 chr4 154311180 154311287 -1318833 - ORR1E LTR MaLR -179 180 60 3 1762 1133 208 19 5 chr4 154311386 154311599 -1318521 - B3 SINE B2 0 216 1 3 1762 801 95 0 0 chr4 154311622 154311738 -1318382 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 3 1762 509 202 43 0 chr4 154311745 154311839 -1318281 - B1_Mus1 SINE Alu -40 108 11 3 1762 335 242 49 69 chr4 154311750 154311852 -1318268 - MT2B LTR ERVL -344 257 158 3 1762 318 302 61 100 chr4 154311859 154312223 -1317897 + L1MB7 LINE L1 5346 5693 -491 3 1762 599 290 188 48 chr4 154312249 154312499 -1317621 + B4A SINE B4 2 286 -6 3 1762 295 225 20 119 chr4 154312826 154312927 -1317193 + ID_B1 SINE B4 109 199 -25 3 1762 546 208 24 24 chr4 154312861 154312984 -1317136 + B1_Mur2 SINE Alu 27 149 0 3 1762 351 244 0 24 chr4 154312971 154313055 -1317065 + ID_B1 SINE B4 133 214 -10 3 1762 296 259 0 138 chr4 154313328 154313422 -1316698 + B4A SINE B4 1 81 -211 3 1762 607 182 14 0 chr4 154313427 154313788 -1316332 + (CA)n Simple_repeat Simple_repeat 1 366 0 3 1762 186 235 8 17 chr4 154313799 154313896 -1316224 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1762 3553 25 2 0 chr4 154313896 154314291 -1315829 + MTA_Mm LTR MaLR 1 396 0 3 1762 186 235 8 17 chr4 154314291 154314310 -1315810 + (CA)n Simple_repeat Simple_repeat 2 19 0 3 1762 261 0 0 0 chr4 154314312 154314341 -1315779 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1762 306 0 0 0 chr4 154314341 154314374 -1315746 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1762 524 322 64 10 chr4 154314763 154314994 -1315126 + L1MB7 LINE L1 5674 5915 -264 3 1762 489 258 85 58 chr4 154315091 154315280 -1314840 + B3A SINE B2 1 194 -4 3 1762 730 232 193 0 chr4 154315285 154315466 -1314654 + B3 SINE B2 1 216 0 3 1762 741 169 0 8 chr4 154315599 154315724 -1314396 - B1_Mur4 SINE Alu -1 149 26 3 1762 462 240 10 0 chr4 154315756 154315856 -1314264 + PB1D10 SINE Alu 17 117 0 3 1762 658 251 55 11 chr4 154315910 154316091 -1314029 - B3A SINE B2 -5 193 5 3 1762 309 151 0 0 chr4 154316295 154316348 -1313772 + (TCTCTG)n Simple_repeat Simple_repeat 1 53 0 3 1762 395 0 0 162 chr4 154316349 154316732 -1313388 + (CTCTG)n Simple_repeat Simple_repeat 1 320 0 3 1762 1214 55 0 0 chr4 154318718 154318863 -1311257 + B1_Mm SINE Alu 3 147 0 4 1762 606 215 0 0 chr4 154318865 154319000 -1311120 + GA-rich Low_complexity Low_complexity 2 136 0 4 1762 422 193 45 0 chr4 154319023 154319111 -1311009 + B1_Mus1 SINE Alu 9 100 -48 4 1762 244 258 16 31 chr4 154319054 154319118 -1311002 + RLTR25B LTR ERVK 444 506 -522 4 1762 225 328 0 0 chr4 154320957 154321018 -1309102 + (CG)n Simple_repeat Simple_repeat 1 61 0 4 1762 1620 0 0 0 chr4 154321018 154321303 -1308817 + (CA)n Simple_repeat Simple_repeat 1 285 0 4 1762 402 268 40 24 chr4 154321402 154321518 -1308602 + RSINE1 SINE B4 23 140 -25 4 1762 288 0 0 0 chr4 154321518 154321550 -1308570 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1762 392 37 19 0 chr4 154321820 154321874 -1308246 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 4 1762 318 356 35 56 chr4 154321901 154322044 -1308076 - ID_B1 SINE B4 -1 223 84 4 1762 1730 21 0 0 chr4 154322056 154322249 -1307871 - B2_Mm1a SINE B2 0 193 1 4 1762 199 247 75 38 chr4 154323473 154323553 -1306567 - MIR SINE MIR -71 191 109 4 1762 244 0 0 31 chr4 154324032 154324064 -1306056 + (TCC)n Simple_repeat Simple_repeat 2 32 0 4 1762 814 204 13 11 chr4 154324064 154324514 -1305606 + CT-rich Low_complexity Low_complexity 1 450 0 4 1762 437 139 0 137 chr4 154325286 154325403 -1304717 + MT2B LTR ERVL 164 264 -337 4 1762 967 72 14 0 chr4 154325300 154325438 -1304682 + B1_Mur3 SINE Alu 10 149 0 4 1762 377 123 0 15 chr4 154325438 154325504 -1304616 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 4 1762 1144 58 0 0 chr4 154325921 154326059 -1304061 - B1_Mus1 SINE Alu -10 138 1 4 1762 300 254 0 14 chr4 154326686 154326758 -1303362 - MIR SINE MIR -112 150 80 4 1762 241 256 56 44 chr4 154328167 154328257 -1301863 - MIRc SINE MIR -120 148 58 4 1762 510 96 0 0 chr4 154329383 154329456 -1300664 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1762 523 250 23 68 chr4 154329510 154329643 -1300477 + RSINE1 SINE B4 1 127 -38 4 1762 315 0 0 0 chr4 154329644 154329679 -1300441 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1762 189 0 0 0 chr4 154330285 154330306 -1299814 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 4 1762 326 327 53 0 chr4 154330454 154330473 -1299647 + ID SINE ID 57 81 -143 4 1762 440 252 26 0 chr4 154330473 154330590 -1299530 + B1F1 SINE Alu 1 117 0 4 1762 302 122 101 63 chr4 154330591 154330670 -1299450 + RLTR25B LTR ERVK 428 509 -519 4 1762 858 53 0 0 chr4 154330600 154330713 -1299407 + B1_Mus1 SINE Alu 36 148 0 4 1762 1227 310 147 5 chr4 154331523 154332087 -1298033 - L1MB3 LINE L1 -7 6176 5533 4 1762 242 106 21 0 chr4 154332705 154332752 -1297368 + (AGGGGG)n Simple_repeat Simple_repeat 1 48 0 4 1762 24 67 0 0 chr4 154334955 154335000 -1295120 + GC_rich Low_complexity Low_complexity 1 45 0 4 1762 198 0 0 0 chr4 154335057 154335079 -1295041 + (CTCCG)n Simple_repeat Simple_repeat 3 24 0 4 1762 218 341 87 24 chr4 154338907 154339033 -1291087 - MIR SINE MIR -78 184 51 4 1762 185 108 0 26 chr4 154339041 154339079 -1291041 + (CCCCCT)n Simple_repeat Simple_repeat 2 38 0 4 1762 211 194 0 0 chr4 154339967 154340003 -1290117 + CT-rich Low_complexity Low_complexity 2 37 0 4 1762 453 159 165 18 chr4 154340284 154340393 -1289727 - RSINE1 SINE B4 -28 137 13 4 1762 557 203 0 63 chr4 154341087 154341213 -1288907 + PB1D7 SINE Alu 3 120 0 4 1762 189 0 0 0 chr4 154341243 154341264 -1288856 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1762 1120 83 0 0 chr4 154341264 154341408 -1288712 - B1_Mus2 SINE Alu 0 147 4 4 1762 683 196 28 14 chr4 154341413 154341570 -1288550 + B3 SINE B2 42 216 0 4 1762 22 0 0 0 chr4 154341578 154341600 -1288520 + AT_rich Low_complexity Low_complexity 1 22 0 4 1762 227 184 61 0 chr4 154341845 154341894 -1288226 - tRNA-Ala-GCG tRNA tRNA -22 53 2 4 1762 450 53 0 0 chr4 154342052 154342109 -1288011 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1762 283 233 83 39 chr4 154342126 154342282 -1287838 - L1MA4 LINE L1 -371 5929 5767 4 1762 459 179 0 133 chr4 154342305 154342440 -1287680 - PB1D10 SINE Alu 0 117 1 4 1762 675 254 107 51 chr4 154342466 154342719 -1287401 - B4 SINE B4 -24 268 2 4 1762 1447 73 11 0 chr4 154342852 154343043 -1287077 + B2_Mm1a SINE B2 1 193 0 4 1762 541 149 16 73 chr4 154349178 154349301 -1280819 - PB1D10 SINE Alu 0 117 2 4 1762 730 199 8 0 chr4 154349525 154349656 -1280464 + B1_Mur1 SINE Alu 10 141 -8 4 1762 504 0 0 0 chr4 154349664 154349720 -1280400 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1762 270 0 0 0 chr4 154354094 154354124 -1275996 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1762 216 86 0 0 chr4 154354124 154354158 -1275962 + (CG)n Simple_repeat Simple_repeat 2 36 0 4 1762 339 338 103 7 chr4 154354174 154354320 -1275800 - RSINE1 SINE B4 -2 163 4 4 1762 264 149 0 0 chr4 154354993 154355040 -1275080 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1762 198 0 0 0 chr4 154356057 154356079 -1274041 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 4 1762 1198 41 0 20 chr4 154356634 154356783 -1273337 + B1_Mus1 SINE Alu 3 148 0 4 1762 200 35 35 0 chr4 154359178 154359207 -1270913 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 4 1762 216 0 0 0 chr4 154359552 154359576 -1270544 + (TGG)n Simple_repeat Simple_repeat 1 24 0 4 1762 405 0 0 0 chr4 154364603 154364648 -1265472 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1762 242 160 20 0 chr4 154368990 154369040 -1261080 + CT-rich Low_complexity Low_complexity 2 52 0 4 1762 290 390 17 0 chr4 154369840 154370017 -1260103 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1762 382 303 24 6 chr4 154369942 154370108 -1260012 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 4 1762 651 149 0 26 chr4 154371746 154371863 -1258257 - B1_Mur4 SINE Alu -2 148 35 4 1762 3057 115 5 60 chr4 154371983 154372537 -1257583 + RLTR28 LTR ERVL 1 524 0 4 1762 200 380 29 29 chr4 154374932 154375035 -1255085 - MIRc SINE MIR -115 153 51 4 1762 245 316 13 0 chr4 154375281 154375360 -1254760 + MTE2a LTR MaLR 52 131 -248 4 1762 2199 161 66 15 chr4 154375362 154375898 -1254222 + ORR1A2 LTR MaLR 1 377 -2 4 1762 2013 124 157 26 chr4 154377945 154378327 -1251793 - RMER4B LTR ERVK 0 585 154 4 1762 444 67 0 0 chr4 154379651 154379711 -1250409 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1762 410 0 20 0 chr4 154379711 154379760 -1250360 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1762 204 179 0 0 chr4 154379774 154379813 -1250307 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1762 390 42 0 0 chr4 154379853 154379901 -1250219 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1762 219 227 0 0 chr4 154379952 154380018 -1250102 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1762 330 26 0 0 chr4 154383271 154383310 -1246810 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1762 216 67 0 0 chr4 154386603 154386633 -1243487 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1762 495 48 0 0 chr4 154386788 154386850 -1243270 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1762 291 28 0 0 chr4 154390810 154390846 -1239274 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1762 195 259 34 90 chr4 154392557 154392646 -1237474 - L3b LINE CR1 -187 295 212 4 1762 180 0 0 0 chr4 154393491 154393511 -1236609 + (CTAG)n Simple_repeat Simple_repeat 3 22 0 4 1762 1028 143 12 0 chr4 154401271 154401439 -1228681 + B2_Mm1t SINE B2 2 171 -22 4 1762 344 105 0 20 chr4 154401547 154401612 -1228508 + B2_Mm2 SINE B2 47 109 -107 4 1762 248 53 0 26 chr4 154401620 154401659 -1228461 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 4 220 303 140 0 0 chr4 154402775 154402825 -1227295 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1763 198 300 140 0 chr4 154403721 154403821 -1226299 - MIR3 SINE MIR -52 156 43 4 1763 347 196 0 21 chr4 154404771 154404865 -1225255 + GA-rich Low_complexity Low_complexity 2 93 0 4 1763 757 93 0 148 chr4 154406001 154406172 -1223948 + L1_Mus4 LINE L1 6496 6636 0 4 1763 850 143 0 28 chr4 154406172 154406352 -1223768 + GA-rich Low_complexity Low_complexity 2 176 0 4 1763 202 306 0 53 chr4 154408293 154408369 -1221751 + (CCCCAG)n Simple_repeat Simple_repeat 5 76 0 4 1763 304 346 95 17 chr4 154411954 154412186 -1217934 + MLT1C LTR MaLR 215 464 -3 4 1763 193 292 64 13 chr4 154412379 154412480 -1217640 - MIRc SINE MIR -123 145 36 4 1763 1121 58 58 0 chr4 154412941 154413080 -1217040 + B1_Mm SINE Alu 1 147 0 4 1763 1379 55 55 0 chr4 154413104 154413287 -1216833 + B2_Mm1t SINE B2 1 193 0 4 1763 386 38 0 19 chr4 154413288 154413341 -1216779 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 4 1763 623 155 8 57 chr4 154413355 154413478 -1216642 + PB1D10 SINE Alu 1 117 0 4 1763 707 183 0 6 chr4 154414071 154414252 -1215868 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1763 376 123 0 36 chr4 154416324 154416408 -1213712 + G-rich Low_complexity Low_complexity 2 82 0 4 1763 261 57 0 0 chr4 154418854 154418889 -1211231 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1763 686 251 76 5 chr4 154419337 154419521 -1210599 + B3A SINE B2 2 198 0 4 1763 383 0 21 0 chr4 154420055 154420102 -1210018 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1763 788 200 0 0 chr4 154424002 154424137 -1205983 + RSINE1 SINE B4 2 136 -29 4 1763 216 0 0 0 chr4 154424145 154424169 -1205951 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1763 306 0 0 0 chr4 154424211 154424245 -1205875 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1763 321 347 34 54 chr4 154424484 154424571 -1205549 + ID_B1 SINE B4 23 222 -2 5 1763 383 293 26 8 chr4 154424571 154424688 -1205432 + B1F SINE Alu 29 147 -2 5 1763 40 0 0 0 chr4 154424688 154424728 -1205392 + AT_rich Low_complexity Low_complexity 1 40 0 5 1763 1342 111 5 0 chr4 154424731 154424920 -1205200 + B2_Mm1a SINE B2 2 191 -2 5 1763 188 243 14 0 chr4 154424978 154425052 -1205068 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1763 248 304 39 102 chr4 154425367 154425623 -1204497 - RMER12 LTR ERVK -334 988 749 5 1763 360 170 0 0 chr4 154426995 154427101 -1203019 + CT-rich Low_complexity Low_complexity 2 107 0 5 1763 789 145 0 0 chr4 154427102 154427281 -1202839 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1763 873 128 0 0 chr4 154427302 154427482 -1202638 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1763 321 26 0 0 chr4 154427482 154427519 -1202601 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1763 309 219 44 31 chr4 154429382 154429542 -1200578 + CT-rich Low_complexity Low_complexity 1 162 0 5 1763 337 210 46 46 chr4 154429601 154430018 -1200102 + CT-rich Low_complexity Low_complexity 1 417 0 5 1763 1296 337 111 38 chr4 154433192 154434135 -1195985 + Charlie1a DNA MER1_type 217 1228 -227 5 1763 405 268 0 93 chr4 154434144 154434251 -1195869 - B1_Mur2 SINE Alu -51 98 2 5 1763 254 216 0 139 chr4 154434187 154434273 -1195847 - B4A SINE B4 -152 140 67 5 1763 1182 264 74 32 chr4 154434390 154434769 -1195351 - MER63D DNA AcHobo -665 396 2 5 1763 227 349 52 64 chr4 154434769 154434848 -1195272 + Charlie1a DNA MER1_type 1370 1445 -10 5 1763 604 309 56 42 chr4 154438898 154439185 -1190935 + B4A SINE B4 2 292 0 5 1763 211 313 15 0 chr4 154439198 154439265 -1190855 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1763 1381 83 11 0 chr4 154439307 154439487 -1190633 + B2_Mm2 SINE B2 1 182 -13 5 1763 1499 33 60 0 chr4 154439487 154439669 -1190451 + B2_Mm1a SINE B2 1 193 0 5 1763 957 70 0 0 chr4 154439759 154439887 -1190233 + B1_Mus1 SINE Alu 1 128 -20 5 1763 189 371 20 30 chr4 154441362 154441462 -1188658 - MIR SINE MIR -24 238 140 5 1763 799 52 155 0 chr4 154441756 154441872 -1188248 - B1_Mus1 SINE Alu -14 134 1 5 1763 193 338 0 61 chr4 154441876 154441958 -1188162 + MIR3 SINE MIR 86 162 -46 5 1763 194 286 33 67 chr4 154442443 154442533 -1187587 - L2 LINE L2 -1075 2344 2258 5 1763 881 132 102 0 chr4 154446298 154446464 -1183656 + B2_Mm2 SINE B2 12 194 -1 5 1763 930 74 88 7 chr4 154446546 154446682 -1183438 + B1_Mus2 SINE Alu 1 147 0 5 1763 366 231 0 0 chr4 154446687 154446752 -1183368 + RSINE1 SINE B4 87 151 -14 5 1763 243 0 0 0 chr4 154446766 154446793 -1183327 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1763 1118 65 14 0 chr4 154446797 154446936 -1183184 - B1_Mus1 SINE Alu -5 143 3 5 1763 932 155 14 0 chr4 154447316 154447458 -1182662 + B1_Mur4 SINE Alu 1 144 -6 5 1763 28 0 0 0 chr4 154448489 154448517 -1181603 + AT_rich Low_complexity Low_complexity 1 28 0 5 1763 927 96 75 25 chr4 154451107 154451268 -1178852 - B2_Mm2 SINE B2 0 195 27 5 1763 418 172 7 141 chr4 154451276 154451304 -1178816 - ID_B1 SINE B4 0 224 108 5 1763 827 47 0 0 chr4 154451304 154451411 -1178709 - B1_Mus1 SINE Alu -14 134 28 5 1763 248 128 0 0 chr4 154451416 154451455 -1178665 - B2_Mm2 SINE B2 -155 40 2 5 1763 36 0 0 0 chr4 154451461 154451497 -1178623 + AT_rich Low_complexity Low_complexity 1 36 0 5 1763 464 233 26 55 chr4 154451509 154451675 -1178445 + B3 SINE B2 25 176 -19 5 1763 1198 55 0 7 chr4 154451737 154451884 -1178236 + B1_Mm SINE Alu 2 147 0 5 1763 21 36 0 0 chr4 154451884 154451912 -1178208 + AT_rich Low_complexity Low_complexity 1 28 0 5 1763 400 276 0 0 chr4 154452059 154452146 -1177974 + RSINE1 SINE B4 5 91 -74 5 1763 646 156 0 9 chr4 154452154 154452264 -1177856 + B1_Mus2 SINE Alu 39 147 0 5 1763 1743 21 0 0 chr4 154453184 154453376 -1176744 + B2_Mm1a SINE B2 2 193 0 5 1763 903 86 7 60 chr4 154453465 154453614 -1176506 - B1_Mus1 SINE Alu -1 147 7 5 1763 294 57 41 41 chr4 154455132 154455205 -1174915 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1763 341 188 12 0 chr4 154456449 154456529 -1173591 + GA-rich Low_complexity Low_complexity 5 85 0 5 1763 1096 59 15 0 chr4 154458112 154458248 -1171872 + B1_Mm SINE Alu 2 139 -8 5 1763 195 69 0 0 chr4 154458255 154458284 -1171836 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 1763 603 194 124 0 chr4 154458326 154458455 -1171665 + B1_Mur1 SINE Alu 3 147 -2 5 1763 494 280 53 12 chr4 154458622 154458792 -1171328 + MIR SINE MIR 8 184 -78 5 1763 180 308 121 0 chr4 154459027 154459118 -1171002 + L2a LINE L2 3289 3390 -36 5 1763 297 105 317 4 chr4 154459648 154459730 -1170390 - B1_Mur4 SINE Alu -15 105 3 5 1763 26 50 0 0 chr4 154460082 154460122 -1169998 + GC_rich Low_complexity Low_complexity 1 40 0 5 1763 185 65 32 0 chr4 154460208 154460239 -1169881 + (CCCG)n Simple_repeat Simple_repeat 1 32 0 5 1763 216 0 0 0 chr4 154461932 154461956 -1168164 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1763 607 133 8 96 chr4 154462223 154462271 -1167849 + B1_Mur4 SINE Alu 37 84 -66 5 1763 1676 36 0 0 chr4 154462271 154462463 -1167657 - B2_Mm1t SINE B2 0 193 2 5 1763 607 133 8 96 chr4 154462463 154462539 -1167581 + B1_Mur4 SINE Alu 85 150 0 5 1763 432 0 0 0 chr4 154462542 154462590 -1167530 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 5 1763 388 240 21 40 chr4 154462806 154462907 -1167213 - PB1D10 SINE Alu 0 149 34 5 1763 816 237 30 0 chr4 154463164 154463333 -1166787 + B3A SINE B2 1 174 -24 5 1763 218 196 43 0 chr4 154463452 154463498 -1166622 - PB1 SINE Alu -72 55 8 5 1763 1045 169 20 31 chr4 154464012 154464208 -1165912 + B2_Mm2 SINE B2 1 194 -1 5 1763 526 218 23 3 chr4 154464584 154464709 -1165411 + B1_Mur1 SINE Alu 1 138 -11 5 1763 833 199 7 0 chr4 154464709 154464855 -1165265 + B1_Mus1 SINE Alu 2 148 0 5 1763 479 222 102 15 chr4 154464855 154464866 -1165254 + B1_Mur2 SINE Alu 139 149 0 5 1763 216 219 0 0 chr4 154464866 154464907 -1165213 + A-rich Low_complexity Low_complexity 1 41 0 5 1763 225 0 0 0 chr4 154466022 154466047 -1164073 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1763 984 24 150 0 chr4 154466047 154466174 -1163946 - B1_Mm SINE Alu 0 147 2 5 1763 237 276 101 10 chr4 154468074 154468173 -1161947 - LTR41 LTR ERVL -593 175 68 5 1763 1681 225 57 5 chr4 154468320 154468704 -1161416 - MTD LTR MaLR -3 416 13 5 1763 195 297 46 15 chr4 154469090 154469155 -1160965 - MIRb SINE MIR -89 179 113 5 1763 25 0 0 0 chr4 154469980 154470005 -1160115 + AT_rich Low_complexity Low_complexity 1 25 0 5 1763 440 329 120 3 chr4 154470434 154470718 -1159402 - L1MB3 LINE L1 -33 6150 5834 5 1763 402 273 111 56 chr4 154470828 154471026 -1159094 - L1MB3 LINE L1 -529 5654 5446 5 1763 219 339 0 0 chr4 154476487 154476546 -1153574 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 5 1763 462 79 0 0 chr4 154476548 154476611 -1153509 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1763 770 167 7 48 chr4 154476720 154476865 -1153255 + B1_Mus2 SINE Alu 8 146 -1 5 1763 485 251 47 130 chr4 154477063 154477278 -1152842 + B3A SINE B2 2 198 0 5 1763 969 235 10 5 chr4 154477399 154477596 -1152524 - B3A SINE B2 0 198 1 5 1763 408 244 42 34 chr4 154477603 154477722 -1152398 - PB1D9 SINE Alu 0 120 1 5 1763 311 317 121 31 chr4 154477724 154477981 -1152139 - L1MB8 LINE L1 -64 6114 5834 5 1763 245 314 69 0 chr4 154478059 154478161 -1151959 - L1MB8 LINE L1 -457 5721 5613 5 1763 530 312 18 36 chr4 154478191 154478357 -1151763 + RSINE1 SINE B4 3 165 0 5 1763 21 0 0 0 chr4 154478391 154478412 -1151708 + AT_rich Low_complexity Low_complexity 1 21 0 5 1763 197 0 0 67 chr4 154478576 154478606 -1151514 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1763 252 147 54 35 chr4 154478607 154478680 -1151440 - B1_Mus2 SINE Alu 0 147 43 5 1763 397 290 24 0 chr4 154478686 154478810 -1151310 - B1_Mus1 SINE Alu -21 127 1 5 1763 238 264 0 65 chr4 154478742 154478819 -1151301 - B4A SINE B4 -140 152 81 5 1763 230 259 12 0 chr4 154478851 154478932 -1151188 - L1M5 LINE L1 -824 5322 5241 5 1763 21 0 0 56 chr4 154478932 154478947 -1151173 + AT_rich Low_complexity Low_complexity 1 15 0 5 1763 1278 21 7 0 chr4 154478947 154479092 -1151028 + B1_Mm SINE Alu 1 146 -1 5 1763 21 0 0 56 chr4 154479092 154479112 -1151008 + AT_rich Low_complexity Low_complexity 1 19 0 5 1763 702 163 47 5 chr4 154479117 154479265 -1150855 + B1_Mus2 SINE Alu 1 149 0 5 1763 810 267 23 28 chr4 154479331 154479547 -1150573 - B3 SINE B2 0 216 2 5 1763 21 71 0 0 chr4 154479560 154479602 -1150518 + AT_rich Low_complexity Low_complexity 1 42 0 5 1763 332 260 79 19 chr4 154479670 154479833 -1150287 - L1M5 LINE L1 -1023 5123 4948 5 1763 238 279 0 14 chr4 154479920 154479989 -1150131 + LTR33A_ LTR ERVL 418 485 -46 5 1763 463 245 114 24 chr4 154480025 154480192 -1149928 - L1M5 LINE L1 -1431 4715 4534 5 1763 573 213 25 68 chr4 154480385 154480546 -1149574 - ID_B1 SINE B4 -4 220 67 5 1763 462 213 126 7 chr4 154480548 154480699 -1149421 - L1M4 LINE L1 -1107 5039 4871 5 1763 278 283 0 0 chr4 154480831 154480891 -1149229 - ID SINE ID -163 61 2 5 1763 218 119 0 23 chr4 154480903 154480976 -1149144 + (TTTG)n Simple_repeat Simple_repeat 1 71 0 5 1763 1649 36 5 0 chr4 154480978 154481170 -1148950 - B2_Mm1a SINE B2 0 193 1 5 1763 992 143 7 0 chr4 154481173 154481320 -1148800 - B1_Mur3 SINE Alu -1 148 1 5 1763 316 223 62 31 chr4 154481341 154481438 -1148682 - L1MEc LINE L1 -1872 4447 4348 5 1763 372 303 143 9 chr4 154481462 154481685 -1148435 - L1M5 LINE L1 -602 5562 5310 5 1763 812 174 21 14 chr4 154481694 154481834 -1148286 + B1_Mur2 SINE Alu 2 142 -7 5 1763 1312 170 149 54 chr4 154482057 154482228 -1147892 - ORR1B2 LTR MaLR 0 367 155 5 1763 288 0 0 0 chr4 154482228 154482260 -1147860 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1763 1312 170 149 54 chr4 154482260 154482423 -1147697 - ORR1B2 LTR MaLR -213 154 2 5 1763 1244 134 37 0 chr4 154482514 154482701 -1147419 - B2_Mm2 SINE B2 0 195 2 5 1763 252 226 0 0 chr4 154482791 154482844 -1147276 - RSINE1 SINE B4 -111 54 2 6 1763 414 0 0 0 chr4 154483188 154483234 -1146886 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 6 1763 270 280 49 33 chr4 154483245 154483367 -1146753 - L1MEc LINE L1 -5238 1162 1039 5 1763 226 238 84 36 chr4 154483510 154483593 -1146527 - PB1D10 SINE Alu -8 109 23 6 1763 1279 271 81 14 chr4 154483599 154484041 -1146079 - L1MEc LINE L1 -5432 968 497 5 1763 909 177 7 0 chr4 154486300 154486447 -1143673 - B1_Mur4 SINE Alu 0 150 3 6 1763 1171 165 29 107 chr4 154486625 154486869 -1143251 - URR1A DNA MER1_type 0 226 2 6 1763 322 239 125 0 chr4 154487018 154487106 -1143014 - PB1D10 SINE Alu -8 109 11 6 1763 236 274 0 61 chr4 154487057 154487123 -1142997 - B4A SINE B4 -148 144 83 6 1763 1152 51 0 0 chr4 154487476 154487632 -1142488 + (TCCC)n Simple_repeat Simple_repeat 4 159 0 6 1763 284 0 28 0 chr4 154492729 154492765 -1137355 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1763 21 0 0 0 chr4 154493152 154493173 -1136947 + AT_rich Low_complexity Low_complexity 1 21 0 6 1763 518 269 75 0 chr4 154493528 154493662 -1136458 - RSINE1 SINE B4 -20 145 2 6 1763 1398 108 0 5 chr4 154493704 154493900 -1136220 - B2_Mm2 SINE B2 0 195 1 6 1763 308 256 26 0 chr4 154494910 154494988 -1135132 - ID4_ SINE ID -3 80 1 6 1763 772 174 6 63 chr4 154495864 154496023 -1134097 + B1_Mur4 SINE Alu 1 150 0 6 1763 508 126 52 21 chr4 154496036 154496133 -1133987 - B1_Mur4 SINE Alu -13 137 38 6 1763 261 233 0 48 chr4 154496083 154496146 -1133974 - MT2B2 LTR ERVL -344 240 181 6 1763 373 229 162 0 chr4 154497044 154497149 -1132971 + B1F SINE Alu 14 135 -14 6 1763 360 181 36 12 chr4 154497402 154497486 -1132634 + B3 SINE B2 127 212 -4 6 1763 347 281 38 54 chr4 154497733 154497892 -1132228 - MTEb LTR MaLR 0 379 216 6 1763 351 219 37 0 chr4 154497961 154498043 -1132077 - B4A SINE B4 -207 85 1 6 1763 270 225 99 12 chr4 154498129 154498210 -1131910 - MTEb LTR MaLR -228 142 55 6 1763 314 117 32 32 chr4 154501593 154501655 -1128465 - B1_Mur3 SINE Alu -1 148 87 1 1763 381 22 0 0 chr4 154502238 154502284 -1127836 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1763 948 207 54 0 chr4 154505023 154505226 -1124894 - ID_B1 SINE B4 -3 221 8 3 1763 2056 139 47 126 chr4 154506717 154506966 -1123154 - MTC LTR MaLR -2 419 199 4 1763 854 150 50 7 chr4 154506966 154507107 -1123013 - B1_Mur3 SINE Alu 0 149 3 5 1763 2056 139 47 126 chr4 154507107 154507309 -1122811 - MTC LTR MaLR -223 198 4 4 1763 22 0 0 0 chr4 154508686 154508708 -1121412 + AT_rich Low_complexity Low_complexity 1 22 0 6 1763 707 241 15 56 chr4 154509874 154510072 -1120048 - B3A SINE B2 -8 190 1 7 1763 1162 46 23 14 chr4 154510673 154511113 -1119007 + (TG)n Simple_repeat Simple_repeat 1 444 0 8 1763 308 313 260 17 chr4 154512366 154512597 -1117523 + L1MEc LINE L1 724 1010 -6077 9 1763 429 104 78 0 chr4 154512603 154512680 -1117440 + B1_Mus2 SINE Alu 65 147 0 1 1763 210 260 110 0 chr4 154512968 154513041 -1117079 + ID4_ SINE ID 3 83 0 1 1763 28 0 0 0 chr4 154513531 154513559 -1116561 + AT_rich Low_complexity Low_complexity 1 28 0 1 1763 414 261 103 44 chr4 154513567 154513703 -1116417 - RSINE1 SINE B4 -1 164 21 1 1763 427 305 69 28 chr4 154513939 154514009 -1116111 + ID SINE ID 6 81 -143 1 1763 269 290 56 74 chr4 154514009 154514117 -1116003 + PB1D10 SINE Alu 1 106 -11 1 1763 308 340 60 60 chr4 154514126 154514292 -1115828 + L1MEc LINE L1 1777 1942 -5392 9 1763 423 0 0 0 chr4 154515671 154515718 -1114402 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1763 528 16 0 0 chr4 154515718 154515778 -1114342 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1763 852 244 42 126 chr4 154515779 154516065 -1114055 - B4 SINE B4 -30 262 1 1 1763 774 67 0 0 chr4 154517309 154517413 -1112707 - B1_Mm SINE Alu -38 109 6 1 1763 226 97 0 0 chr4 154517388 154517419 -1112701 - MT2C_Mm LTR ERVL -240 235 205 2 1763 210 306 0 82 chr4 154518681 154518816 -1111304 + C-rich Low_complexity Low_complexity 3 126 0 2 1763 330 26 0 0 chr4 154520114 154520153 -1109967 + (TCC)n Simple_repeat Simple_repeat 2 40 0 2 1763 257 266 127 0 chr4 154520834 154520913 -1109207 + PB1D10 SINE Alu 24 112 -5 2 1763 415 259 0 0 chr4 154520931 154521016 -1109104 + B4 SINE B4 2 86 -206 2 1763 876 122 27 61 chr4 154521028 154521176 -1108944 + B1_Mur4 SINE Alu 2 144 -6 2 1763 569 306 13 122 chr4 154521206 154521444 -1108676 + B4 SINE B4 81 292 0 2 1763 366 257 0 34 chr4 154521528 154521705 -1108415 + (CATA)n Simple_repeat Simple_repeat 4 174 0 2 1763 225 0 0 0 chr4 154522606 154522631 -1107489 + (CAGCC)n Simple_repeat Simple_repeat 4 28 0 2 1763 219 232 36 24 chr4 154522798 154522882 -1107238 + GA-rich Low_complexity Low_complexity 1 85 0 2 1763 255 141 31 15 chr4 154527491 154527556 -1102564 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 2 1763 294 29 0 0 chr4 154528861 154528896 -1101224 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1764 491 242 41 16 chr4 154534260 154534382 -1095738 - B1_Mur2 SINE Alu -1 148 24 3 1764 1165 76 0 0 chr4 154534399 154534544 -1095576 - B1_Mm SINE Alu -2 145 1 3 1764 222 62 0 0 chr4 154537694 154537726 -1092394 + (CACCC)n Simple_repeat Simple_repeat 4 35 0 3 1764 494 151 18 69 chr4 154538353 154538473 -1091647 + B1_Mur2 SINE Alu 1 148 -1 3 1764 288 53 0 0 chr4 154538558 154538596 -1091524 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1764 1053 203 29 34 chr4 154539229 154539438 -1090682 + B3 SINE B2 2 209 -7 3 1764 861 262 0 29 chr4 154539438 154539646 -1090474 + B3 SINE B2 14 215 -1 3 1764 207 0 0 0 chr4 154539702 154539725 -1090395 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1764 511 167 209 9 chr4 154539725 154539840 -1090280 - B1_Mus2 SINE Alu -9 138 1 3 1764 490 283 25 16 chr4 154539881 154540003 -1090117 - B3A SINE B2 -75 123 1 4 1764 309 135 0 0 chr4 154540014 154540066 -1090054 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 4 1764 689 162 122 44 chr4 154541380 154541561 -1088559 - URR1A DNA MER1_type 0 226 32 4 1764 261 312 0 0 chr4 154542256 154542336 -1087784 + L1MB7 LINE L1 5433 5512 -672 4 1764 257 300 71 18 chr4 154542463 154542575 -1087545 + L1MD1 LINE L1 6125 6242 0 4 1764 422 314 80 95 chr4 154542730 154543068 -1087052 + L1MB7 LINE L1 5754 6086 -98 4 1764 1025 62 78 0 chr4 154544256 154544385 -1085735 + B1_Mm SINE Alu 1 139 -8 4 1764 192 40 0 0 chr4 154544385 154544410 -1085710 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1764 388 259 93 0 chr4 154544412 154544575 -1085545 - B3A SINE B2 -6 189 2 4 1764 871 262 51 0 chr4 154546218 154546432 -1083688 + B4A SINE B4 1 225 -67 4 1764 189 0 0 0 chr4 154548568 154548589 -1081531 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1764 393 22 0 0 chr4 154549136 154549182 -1080938 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 5 1764 421 172 14 0 chr4 154549193 154549276 -1080844 - PB1D9 SINE Alu -6 121 29 5 1764 699 179 0 0 chr4 154549290 154549407 -1080713 + B1_Mus2 SINE Alu 22 138 -9 5 1764 659 206 100 76 chr4 154549719 154549929 -1080191 - B3 SINE B2 0 216 2 5 1764 788 224 80 20 chr4 154552672 154552872 -1077248 - B3 SINE B2 -3 213 2 5 1764 195 42 0 0 chr4 154553986 154554010 -1076110 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1764 1203 48 0 7 chr4 154554089 154554236 -1075884 + B1_Mus2 SINE Alu 1 146 -1 5 1764 1834 54 8 19 chr4 154554402 154554444 -1075676 + MT2_Mm LTR ERVL 234 274 -219 5 1764 3296 29 39 0 chr4 154554444 154554825 -1075295 - MTA_Mm LTR MaLR 0 396 1 5 1764 9811 16 2 0 chr4 154554825 154555920 -1074200 - MTA_Mm-int LTR MaLR 0 1098 2 5 1764 1834 54 8 19 chr4 154555920 154556139 -1073981 + MT2_Mm LTR ERVL 275 492 -1 5 1764 1191 44 0 0 chr4 154556568 154556705 -1073415 + B1_Mm SINE Alu 2 138 -9 5 1764 260 288 0 0 chr4 154557534 154557593 -1072527 - ID4_ SINE ID -23 60 2 6 1764 412 250 73 9 chr4 154557627 154557736 -1072384 + RSINE1 SINE B4 13 128 -37 6 1764 457 198 93 9 chr4 154557764 154557871 -1072249 - B3A SINE B2 -79 119 4 6 1764 967 202 76 14 chr4 154559375 154559586 -1070534 - URR1B DNA MER1_type -1 224 1 6 1764 326 183 67 0 chr4 154560372 154560432 -1069688 + ID_B1 SINE B4 134 197 -27 6 1764 189 0 0 0 chr4 154560463 154560484 -1069636 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1764 913 148 0 7 chr4 154560906 154561042 -1069078 - B1_Mur3 SINE Alu -13 136 2 6 1764 337 292 25 0 chr4 154561507 154561627 -1068493 + CT-rich Low_complexity Low_complexity 2 124 0 6 1764 485 248 139 0 chr4 154563108 154563237 -1066883 + B1_Mus1 SINE Alu 2 148 0 6 1764 218 81 27 0 chr4 154563239 154563276 -1066844 + (GGA)n Simple_repeat Simple_repeat 3 40 0 6 1764 292 299 286 0 chr4 154563304 154563451 -1066669 + B3A SINE B2 1 189 -9 7 1764 499 189 87 80 chr4 154565590 154565728 -1064392 + B1_Mur2 SINE Alu 1 139 -10 7 1764 198 103 0 0 chr4 154565773 154565802 -1064318 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1764 194 0 39 0 chr4 154566194 154566220 -1063900 + (CCA)n Simple_repeat Simple_repeat 2 28 0 7 1764 265 296 150 24 chr4 154567947 154568193 -1061927 + L1ME1 LINE L1 546 822 -5578 7 1764 238 193 0 0 chr4 154568547 154568604 -1061516 + T-rich Low_complexity Low_complexity 1 57 0 7 1764 466 293 26 20 chr4 154568831 154569026 -1061094 + L1ME1 LINE L1 2892 3087 -3232 7 1764 389 313 91 38 chr4 154569100 154569286 -1060834 + L1ME1 LINE L1 3234 3429 -2890 7 1764 372 236 39 43 chr4 154569366 154569493 -1060627 + B4 SINE B4 101 224 -68 7 1764 365 311 180 0 chr4 154569803 154569925 -1060195 + RSINE1 SINE B4 3 146 -19 7 1764 408 226 96 19 chr4 154570895 154570999 -1059121 + PB1D10 SINE Alu 1 112 -5 7 1764 356 307 65 96 chr4 154571007 154571299 -1058821 + L1ME1 LINE L1 5891 6173 -179 7 1764 534 305 109 5 chr4 154571448 154571649 -1058471 + ID_B1 SINE B4 1 222 -2 7 1764 248 182 0 96 chr4 154572074 154572147 -1057973 + MER5A DNA MER1_type 23 88 -101 8 1764 600 263 75 0 chr4 154572912 154573045 -1057075 + RSINE1 SINE B4 4 146 -19 8 1764 312 257 147 10 chr4 154573162 154573264 -1056856 + RSINE1 SINE B4 4 119 -46 8 1764 204 40 0 0 chr4 154573318 154573343 -1056777 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1764 511 135 46 37 chr4 154573372 154573480 -1056640 - B1_Mur3 SINE Alu -1 148 40 8 1764 245 228 18 0 chr4 154573513 154573570 -1056550 - ID_B1 SINE B4 -77 147 90 8 1764 298 149 0 0 chr4 154573524 154573571 -1056549 - B1_Mur4 SINE Alu -95 55 9 8 1764 398 265 164 53 chr4 154574048 154574255 -1055865 + HAL1 LINE L1 943 1172 -1335 8 1764 186 43 0 0 chr4 154574301 154574324 -1055796 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1764 227 232 124 34 chr4 154574434 154574523 -1055597 + HAL1 LINE L1 1435 1531 -976 8 1764 313 284 0 21 chr4 154574609 154574706 -1055414 + PB1D9 SINE Alu 26 120 0 8 1764 292 270 63 25 chr4 154575137 154575273 -1054847 + ORR1D1 LTR MaLR 50 192 -167 9 1764 781 135 0 78 chr4 154577239 154577392 -1052728 - B1_Mur4 SINE Alu -6 144 2 9 1764 636 233 0 0 chr4 154577426 154577546 -1052574 + PB1D7 SINE Alu 1 120 0 9 1764 436 271 104 8 chr4 154577582 154577716 -1052404 + RSINE1 SINE B4 2 148 -17 9 1764 357 222 186 57 chr4 154577763 154577887 -1052233 - B1F2 SINE Alu -5 144 5 9 1764 1400 84 15 50 chr4 154577968 154578169 -1051951 + B2_Mm2 SINE B2 2 195 0 9 1764 276 264 28 138 chr4 154578179 154578224 -1051896 + MT2B LTR ERVL 135 238 -363 9 1764 405 195 11 44 chr4 154578224 154578315 -1051805 + B1_Mur4 SINE Alu 14 101 -49 9 1764 456 250 30 75 chr4 154578957 154579091 -1051029 - RSINE1 SINE B4 -36 129 2 9 1764 975 214 5 15 chr4 154579185 154579384 -1050736 + B3A SINE B2 2 198 0 9 1764 541 239 22 22 chr4 154580446 154580580 -1049540 + PB1D9 SINE Alu 1 135 -15 1 1764 1031 136 166 35 chr4 154580585 154580784 -1049336 + URR1B DNA MER1_type 1 225 0 1 1764 22 0 0 0 chr4 154580819 154580841 -1049279 + GC_rich Low_complexity Low_complexity 1 22 0 1 1764 360 0 0 0 chr4 154583254 154583294 -1046826 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1764 541 189 96 142 chr4 154583721 154583918 -1046202 + B3A SINE B2 10 197 -1 1 1764 253 243 13 26 chr4 154583936 154584012 -1046108 + L1M5 LINE L1 5364 5438 -726 1 1764 378 134 0 0 chr4 154584046 154584113 -1046007 + (CAGG)n Simple_repeat Simple_repeat 2 68 0 1 1764 373 202 0 147 chr4 154584322 154584438 -1045682 + MT2B LTR ERVL 166 264 -337 1 1764 837 128 0 8 chr4 154584337 154584471 -1045649 + B1_Mus1 SINE Alu 14 146 -2 1 1764 221 0 0 33 chr4 154584471 154584501 -1045619 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 1 1764 249 269 73 18 chr4 154584519 154584629 -1045491 + ID_B1 SINE B4 84 199 -25 1 1764 23 0 0 0 chr4 154584687 154584710 -1045410 + AT_rich Low_complexity Low_complexity 1 23 0 1 1764 415 240 52 0 chr4 154588188 154588284 -1041836 + PB1D10 SINE Alu 1 101 -16 1 1764 405 287 167 8 chr4 154589068 154589307 -1040813 + B4A SINE B4 2 278 -14 1 1764 284 70 23 0 chr4 154589318 154589361 -1040759 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1764 292 235 0 100 chr4 154593043 154593133 -1036987 - MIR SINE MIR -133 129 49 1 1764 288 250 27 34 chr4 154596640 154596789 -1033331 + C-rich Low_complexity Low_complexity 4 151 0 1 1764 289 199 10 83 chr4 154596844 154597077 -1033043 + (CCCG)n Simple_repeat Simple_repeat 1 216 0 1 1764 253 93 18 18 chr4 154597211 154597266 -1032854 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 1 1764 449 269 6 28 chr4 154597380 154597556 -1032564 + (CTCGG)n Simple_repeat Simple_repeat 5 176 0 1 1764 358 271 205 0 chr4 154599151 154599273 -1030847 + RSINE1 SINE B4 2 148 -17 1 1764 21 0 0 0 chr4 154599325 154599346 -1030774 + AT_rich Low_complexity Low_complexity 1 21 0 1 1764 235 301 0 131 chr4 154599549 154599656 -1030464 + MT2B LTR ERVL 164 256 -345 1 1764 341 228 43 11 chr4 154599579 154599672 -1030448 + PB1D9 SINE Alu 24 119 -1 1 1764 303 332 83 58 chr4 154600854 154601132 -1028988 + L1MC4 LINE L1 7214 7498 -544 1 1764 372 261 136 7 chr4 154602132 154602286 -1027834 + HAL1 LINE L1 2024 2197 -310 1 1764 444 150 237 9 chr4 154602327 154602441 -1027679 + B1_Mur4 SINE Alu 11 150 0 1 1764 757 213 57 0 chr4 154602697 154602838 -1027282 - RSINE1 SINE B4 -12 153 5 1 1764 532 242 161 45 chr4 154602896 154603095 -1027025 + ID_B1 SINE B4 2 223 -1 1 1764 180 111 0 0 chr4 154603099 154603126 -1026994 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1764 1247 41 0 7 chr4 154603126 154603274 -1026846 + B1_Mus2 SINE Alu 1 147 0 1 1764 22 0 0 0 chr4 154603274 154603296 -1026824 + AT_rich Low_complexity Low_complexity 1 22 0 1 1764 23 78 0 0 chr4 154603385 154603436 -1026684 + AT_rich Low_complexity Low_complexity 1 51 0 1 1764 303 233 33 65 chr4 154603466 154603536 -1026584 + RSINE1 SINE B4 7 77 -88 1 1764 742 149 48 34 chr4 154603536 154603682 -1026438 + B1_Mur3 SINE Alu 2 149 0 1 1764 303 233 33 65 chr4 154603682 154603703 -1026417 + RSINE1 SINE B4 78 95 -70 1 1764 405 0 0 0 chr4 154603736 154603781 -1026339 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1764 327 293 91 0 chr4 154603789 154603888 -1026232 + RSINE1 SINE B4 58 165 0 1 1764 263 259 15 176 chr4 154604058 154604110 -1026010 + ID_B1 SINE B4 108 156 -68 1 1764 1236 81 52 31 chr4 154604110 154604301 -1025819 + B2_Mm2 SINE B2 1 195 0 1 1764 263 259 15 176 chr4 154604301 154604384 -1025736 + ID_B1 SINE B4 157 221 -3 1 1764 258 311 8 15 chr4 154604397 154604505 -1025615 + ID4_ SINE ID 5 110 -42 1 1764 431 232 23 60 chr4 154604550 154604683 -1025437 - B3 SINE B2 -88 128 1 1 1764 1280 71 41 12 chr4 154606506 154606524 -1023596 - B2_Mm1a SINE B2 -16 177 161 1 1764 222 37 0 0 chr4 154606524 154606551 -1023569 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1764 1280 71 41 12 chr4 154606551 154606703 -1023417 - B2_Mm1a SINE B2 -33 160 2 1 1764 1408 91 0 16 chr4 154607160 154607350 -1022770 + B2_Mm2 SINE B2 2 188 -7 1 1764 377 20 0 20 chr4 154608860 154608911 -1021209 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1764 183 42 0 0 chr4 154609109 154609133 -1020987 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1764 923 223 61 9 chr4 154610447 154610660 -1019460 + ID_B1 SINE B4 1 224 0 1 1764 248 131 0 21 chr4 154612928 154612951 -1017169 + (CCA)n Simple_repeat Simple_repeat 3 25 0 1 1764 788 29 27 69 chr4 154612951 154613139 -1016981 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1764 248 131 0 21 chr4 154613139 154613162 -1016958 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 1764 1122 57 15 33 chr4 154613163 154613439 -1016681 + (CA)n Simple_repeat Simple_repeat 1 270 0 1 1764 781 113 161 0 chr4 154614170 154614294 -1015826 - B1_Mus2 SINE Alu -2 145 2 1 1764 969 162 0 0 chr4 154614666 154614839 -1015281 + CT-rich Low_complexity Low_complexity 5 177 0 1 1764 552 30 0 0 chr4 154614840 154614906 -1015214 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 1 1764 919 56 8 0 chr4 154614906 154615031 -1015089 - B1_Mus2 SINE Alu -10 137 12 1 1764 1546 65 5 32 chr4 154615298 154615519 -1014601 - L1Md_A LINE L1 0 6582 6368 1 1764 237 351 105 24 chr4 154615537 154615747 -1014373 + Charlie5 DNA MER1_type 2381 2607 -17 1 1764 1594 253 12 53 chr4 154616850 154617263 -1012857 - MTD LTR MaLR -5 414 19 1 1764 4120 143 147 21 chr4 154617263 154618064 -1012056 + RMER19B LTR ERVK 1 902 0 1 1764 184 30 61 0 chr4 154618351 154618384 -1011736 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1764 796 281 95 77 chr4 154619247 154619532 -1010588 + B4 SINE B4 1 290 -2 1 1764 1189 43 0 7 chr4 154621731 154621873 -1008247 + B1_Mus2 SINE Alu 2 142 -5 1 1764 204 213 0 21 chr4 154622049 154622061 -1008059 + (TTG)n Simple_repeat Simple_repeat 1 12 0 1 1764 1055 118 0 14 chr4 154622061 154622207 -1007913 - B1_Mur4 SINE Alu -6 144 1 1 1764 204 213 0 21 chr4 154622207 154622242 -1007878 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1764 906 109 0 0 chr4 154622253 154622381 -1007739 + B2_Mm2 SINE B2 2 129 -66 1 1764 253 93 18 18 chr4 154622407 154622462 -1007658 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1764 1233 28 0 7 chr4 154622463 154622607 -1007513 - B1_Mm SINE Alu -1 146 4 1 1764 475 245 249 40 chr4 154622685 154622910 -1007210 - B4 SINE B4 -19 273 2 1 1764 636 160 95 8 chr4 154622925 154623051 -1007069 - B1_Mur4 SINE Alu 0 150 14 1 1764 663 241 44 0 chr4 154623052 154623189 -1006931 + B3 SINE B2 39 181 -35 1 1764 405 0 0 0 chr4 154623318 154623363 -1006757 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1764 184 281 0 17 chr4 154623721 154623779 -1006341 + L3 LINE CR1 2023 2079 -2410 1 1764 24 0 0 0 chr4 154625246 154625270 -1004850 + AT_rich Low_complexity Low_complexity 1 24 0 1 1764 694 292 7 0 chr4 154625272 154625426 -1004694 - RSINE1 SINE B4 -10 155 1 1 1764 774 154 80 14 chr4 154625536 154625674 -1004446 + B1_Mm SINE Alu 1 147 0 1 1764 561 283 208 4 chr4 154625749 154625980 -1004140 - B4A SINE B4 -14 278 1 1 1764 307 307 78 26 chr4 154627062 154627216 -1002904 - MER2 DNA MER2_type -173 172 11 1 1764 245 291 36 12 chr4 154627417 154627500 -1002620 - PB1 SINE Alu -41 86 1 1 1764 1154 82 0 0 chr4 154628722 154628868 -1001252 + B1_Mm SINE Alu 2 147 0 1 1764 264 59 0 0 chr4 154628872 154628906 -1001214 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1764 657 241 7 23 chr4 154628906 154629064 -1001056 + B1_Mur2 SINE Alu 1 148 -1 1 1764 405 0 0 0 chr4 154629161 154629206 -1000914 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 1 1764 1075 67 7 0 chr4 154629206 154629341 -1000779 - B1_Mus2 SINE Alu -11 136 1 1 1764 1168 109 0 6 chr4 154629356 154629373 -1000747 - B2_Mm2 SINE B2 -19 176 160 1 1764 315 0 0 0 chr4 154629373 154629408 -1000712 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1764 1168 109 0 6 chr4 154629408 154629566 -1000554 - B2_Mm2 SINE B2 -36 159 2 1 1764 234 0 0 0 chr4 154629602 154629628 -1000492 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1764 1151 74 0 33 chr4 154629664 154629817 -1000303 + B1_Mus1 SINE Alu 1 148 0 1 1764 357 330 35 0 chr4 154629848 154629963 -1000157 - RSINE1 SINE B4 -45 120 2 1 1764 997 208 134 73 chr4 154630478 154630820 -999300 + MTEa LTR MaLR 1 363 -16 1 1764 1550 58 5 0 chr4 154631130 154631318 -998802 - B2_Mm1a SINE B2 -4 189 1 1 1764 1036 156 45 0 chr4 154631327 154631506 -998614 - B2_Mm2 SINE B2 -7 188 2 1 1764 309 282 143 29 chr4 154631617 154631792 -998328 + MLT1A0 LTR MaLR 76 270 -95 1 1764 224 290 16 0 chr4 154631817 154631879 -998241 + ID4_ SINE ID 3 65 -18 1 1764 229 343 95 0 chr4 154632188 154632293 -997827 - ID_B1 SINE B4 -40 184 70 1 1764 416 218 79 114 chr4 154632404 154632465 -997655 + ID_B1 SINE B4 88 151 -73 1 1764 1445 68 5 16 chr4 154632465 154632658 -997462 + B2_Mm1a SINE B2 3 193 0 1 1764 416 218 79 114 chr4 154632658 154632736 -997384 + ID_B1 SINE B4 152 222 -2 1 1764 1355 89 15 15 chr4 154632916 154633111 -997009 + B2_Mm2 SINE B2 1 195 0 1 1764 252 275 130 11 chr4 154633290 154633382 -996738 - Ricksha_c DNA MuDR -1550 498 396 1 1764 1567 43 16 0 chr4 154633402 154633586 -996534 - B2_Mm2 SINE B2 -8 187 1 1 1764 378 0 0 0 chr4 154633666 154633708 -996412 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1764 450 0 0 0 chr4 154633775 154633825 -996295 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1764 516 16 0 0 chr4 154633889 154633950 -996170 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1764 412 231 50 25 chr4 154637493 154637511 -992609 + ID SINE ID 67 87 -137 2 1764 634 117 58 0 chr4 154637511 154637614 -992506 + B1_Mus1 SINE Alu 3 111 -37 2 1764 595 264 7 33 chr4 154638534 154638687 -991433 - RSINE1 SINE B4 -13 152 4 2 1764 228 264 0 53 chr4 154639119 154639195 -990925 - LTR82B Low_complexity ERVL -545 285 214 2 1764 390 281 74 61 chr4 154641028 154641176 -988944 + RSINE1 SINE B4 3 152 -13 2 1764 436 207 34 51 chr4 154642479 154642596 -987524 - PB1D10 SINE Alu -2 115 1 2 1764 378 0 0 0 chr4 154642981 154643023 -987097 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1764 385 167 0 0 chr4 154643540 154643606 -986514 - PB1D10 SINE Alu -11 106 41 2 1764 1347 80 0 11 chr4 154643832 154644009 -986111 - B2_Mm2 SINE B2 -19 176 2 2 1764 225 0 0 0 chr4 154644009 154644034 -986086 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1764 869 157 8 0 chr4 154644035 154644169 -985951 - B1_Mus1 SINE Alu -13 135 1 2 1764 249 83 0 0 chr4 154644179 154644215 -985905 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1764 184 226 0 31 chr4 154644723 154644787 -985333 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1764 349 268 46 35 chr4 154645793 154645951 -984169 + L1MB3 LINE L1 5393 5556 -624 2 1764 276 316 54 48 chr4 154646404 154646570 -983550 + L1MB3 LINE L1 6017 6183 0 2 1764 623 120 153 88 chr4 154647532 154647669 -982451 + B1_Mus1 SINE Alu 2 147 -1 2 1764 280 197 131 0 chr4 154649480 154649541 -980579 + MER58A DNA MER1_type 23 91 -133 2 1764 365 229 14 0 chr4 154649761 154649831 -980289 + ID4_ SINE ID 8 78 -5 2 1764 393 277 43 0 chr4 154650494 154650588 -979532 - B1F1 SINE Alu -51 98 1 2 1764 271 0 25 25 chr4 154650607 154650647 -979473 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1764 323 277 235 0 chr4 154650652 154650771 -979349 - RSINE1 SINE B4 -15 150 4 2 1764 1393 75 32 5 chr4 154651335 154651522 -978598 - B2_Mm1a SINE B2 0 193 2 2 1764 215 140 20 0 chr4 154651804 154651854 -978266 + GA-rich Low_complexity Low_complexity 1 51 0 2 1764 661 23 23 0 chr4 154651938 154652025 -978095 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1764 371 207 11 79 chr4 154652047 154652136 -977984 - ID_B1 SINE B4 -56 168 86 2 1764 187 306 94 0 chr4 154652441 154652526 -977594 - MIR SINE MIR -68 194 102 2 1764 861 242 56 0 chr4 154653239 154653417 -976703 + B3A SINE B2 1 188 -10 2 1764 641 287 39 31 chr4 154654109 154654364 -975756 - B4A SINE B4 0 292 36 2 1764 307 271 0 14 chr4 154654851 154654922 -975198 + B4A SINE B4 219 288 -4 2 1764 340 307 42 135 chr4 154654963 154655155 -974965 + ID_B1 SINE B4 2 175 -49 2 1764 230 323 58 39 chr4 154655070 154655173 -974947 + PB1D10 SINE Alu 8 112 -5 2 1764 1285 52 6 6 chr4 154655608 154655781 -974339 + B2_Mm2 SINE B2 1 173 -22 2 1764 227 171 0 0 chr4 154657318 154657359 -972761 + C-rich Low_complexity Low_complexity 1 41 0 2 1764 225 262 161 12 chr4 154658250 154658331 -971789 + LTR37A LTR ERV1 312 404 -22 2 1764 1249 41 0 0 chr4 154658408 154658553 -971567 + B1_Mus2 SINE Alu 1 145 -2 2 1764 243 385 12 0 chr4 154659711 154659794 -970326 + MLT2B1 LTR ERVL 392 475 -92 2 1764 1138 81 0 7 chr4 154659970 154659981 -970139 - B1_Mus1 SINE Alu 0 148 138 2 1764 350 21 0 21 chr4 154659981 154660029 -970091 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 1764 1138 81 0 7 chr4 154660029 154660166 -969954 - B1_Mus1 SINE Alu -11 137 1 2 1764 614 177 26 9 chr4 154660169 154660283 -969837 - PB1D10 SINE Alu -1 116 1 2 1764 315 0 0 0 chr4 154660440 154660475 -969645 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 2 1764 282 278 31 94 chr4 154661138 154661265 -968855 + PB1D7 SINE Alu 1 119 -1 2 1764 229 278 11 22 chr4 154661275 154661367 -968753 + (CACCAT)n Simple_repeat Simple_repeat 1 91 0 2 1764 1196 81 28 23 chr4 154662299 154662476 -967644 + B2_Mm1t SINE B2 2 179 -14 2 1764 306 182 26 60 chr4 154662476 154662589 -967531 + B2_Mm2 SINE B2 2 109 -107 2 1764 604 319 83 9 chr4 154663162 154663538 -966582 + L1M3 LINE L1 5371 5767 -533 2 1764 556 58 198 0 chr4 154664847 154664933 -965187 + B1_Mm SINE Alu 8 110 -37 2 220 233 29 29 0 chr4 154664939 154664973 -965147 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1765 255 315 14 0 chr4 154665062 154665135 -964985 - Tigger5 DNA MER2_type -5 2401 2328 2 1765 437 274 26 26 chr4 154665159 154665275 -964845 + PB1D10 SINE Alu 2 117 0 2 1765 954 217 41 36 chr4 154665280 154665500 -964620 + ID_B1 SINE B4 2 222 -2 2 1765 569 280 56 0 chr4 154665505 154665648 -964472 + B4A SINE B4 1 151 -141 2 1765 327 25 0 0 chr4 154665657 154665697 -964423 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1765 327 105 0 0 chr4 154665735 154665792 -964328 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1765 392 320 7 7 chr4 154665995 154666196 -963924 + (TG)n Simple_repeat Simple_repeat 1 201 0 2 1765 276 143 0 0 chr4 154666218 154666274 -963846 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1765 223 308 11 32 chr4 154666289 154666383 -963737 + (TGGG)n Simple_repeat Simple_repeat 1 92 0 2 1765 997 135 0 26 chr4 154666404 154666556 -963564 - B1_Mur1 SINE Alu -1 148 1 2 1765 282 91 0 0 chr4 154666561 154666589 -963531 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1765 1228 55 0 0 chr4 154666589 154666735 -963385 - B1_Mus2 SINE Alu 0 147 2 2 1765 282 91 0 0 chr4 154666735 154666750 -963370 + (T)n Simple_repeat Simple_repeat 1 15 0 2 1765 208 209 32 21 chr4 154667435 154667528 -962592 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1765 278 175 0 66 chr4 154669082 154669143 -960977 - ID_B1 SINE B4 0 224 168 2 1765 697 217 106 40 chr4 154669181 154669407 -960713 - B4A SINE B4 -50 242 2 2 1765 251 241 0 18 chr4 154669408 154669463 -960657 - ID_B1 SINE B4 -69 155 102 2 1765 216 243 68 54 chr4 154669463 154669474 -960646 - B1F2 SINE Alu -64 58 11 2 1765 219 260 0 0 chr4 154669577 154669627 -960493 - PB1D10 SINE Alu -5 112 63 2 1765 721 176 7 45 chr4 154669796 154669951 -960169 - B1_Mur1 SINE Alu 0 149 1 2 1765 253 295 125 25 chr4 154670221 154670381 -959739 - L1MEd LINE L1 -5365 754 579 2 1765 460 342 39 0 chr4 154670624 154670805 -959315 + MER58A DNA MER1_type 33 220 -4 2 1765 809 186 169 0 chr4 154671308 154671491 -958629 + B3 SINE B2 1 214 -2 2 1765 585 305 120 26 chr4 154671593 154671818 -958302 + B4 SINE B4 2 256 -36 2 1765 429 80 13 26 chr4 154671818 154671895 -958225 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1765 585 305 120 26 chr4 154671895 154671935 -958185 + B4 SINE B4 257 292 0 2 1765 1061 216 17 22 chr4 154672401 154672633 -957487 + B4A SINE B4 1 231 -61 2 1765 1129 111 27 43 chr4 154672633 154672821 -957299 + B2_Mm2 SINE B2 1 185 -10 2 1765 212 263 12 95 chr4 154677566 154677650 -952470 + B4A SINE B4 24 100 -192 2 1765 232 327 58 32 chr4 154677667 154677822 -952298 - RMER12 LTR ERVK -433 889 731 2 1765 263 28 28 0 chr4 154677888 154677924 -952196 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1765 470 223 39 20 chr4 154678252 154678391 -951729 + PB1D10 SINE Alu 1 147 -3 2 1765 26 50 0 0 chr4 154678394 154678434 -951686 + AT_rich Low_complexity Low_complexity 1 40 0 2 1765 680 267 0 6 chr4 154678435 154678597 -951523 - RSINE1 SINE B4 -2 163 3 2 1765 297 0 0 0 chr4 154678622 154678655 -951465 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 2 1765 684 241 35 0 chr4 154678655 154678800 -951320 - RSINE1 SINE B4 -5 160 11 2 1765 715 246 59 0 chr4 154678809 154678996 -951124 - B3 SINE B2 -11 205 8 2 1765 226 259 133 11 chr4 154679025 154679115 -951005 + MLT1A1 LTR MaLR 1 101 -307 2 1765 327 25 0 0 chr4 154680407 154680447 -949673 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1765 442 292 0 0 chr4 154681252 154681372 -948748 + PB1D7 SINE Alu 1 120 0 2 1765 324 138 0 0 chr4 154681733 154681798 -948322 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1765 1542 16 5 10 chr4 154684144 154684336 -945784 - B2_Mm1a SINE B2 -1 192 2 2 1765 399 333 97 0 chr4 154684396 154684591 -945529 + Tigger5 DNA MER2_type 4 217 -2189 2 1765 212 239 0 0 chr4 154684823 154684869 -945251 + B1_Mur1 SINE Alu 96 141 -8 2 1765 300 200 0 128 chr4 154684884 154684970 -945150 + ID4 SINE ID 1 75 -8 2 1765 326 306 98 25 chr4 154685215 154685419 -944701 + L1M5 LINE L1 2626 2844 -3302 2 1765 265 341 0 0 chr4 154685464 154685555 -944565 - PB1D7 SINE Alu -7 113 23 2 1765 351 253 13 0 chr4 154685591 154685670 -944450 - ID4 SINE ID -2 81 2 2 1765 857 239 196 22 chr4 154685703 154686020 -944100 + ORR1D1 LTR MaLR 3 374 0 2 1765 279 239 127 0 chr4 154686041 154686112 -944008 + PB1D10 SINE Alu 38 117 0 2 1765 399 202 86 9 chr4 154686293 154686398 -943722 + PB1D10 SINE Alu 2 114 -3 2 1765 291 293 147 39 chr4 154686398 154686629 -943491 + L1M5 LINE L1 3093 3348 -2798 2 1765 468 0 0 0 chr4 154686792 154686844 -943276 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1765 265 314 133 63 chr4 154686869 154686924 -943196 + L1M5 LINE L1 3648 3709 -2437 2 1765 2557 70 90 16 chr4 154686924 154687303 -942817 + MTB_Mm LTR MaLR 1 407 0 2 1765 265 314 133 63 chr4 154687303 154687644 -942476 + L1M5 LINE L1 3710 4072 -2074 2 1765 402 260 60 71 chr4 154687896 154688078 -942042 + B3A SINE B2 1 180 -18 2 1765 243 146 0 0 chr4 154688080 154688135 -941985 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1765 250 299 15 0 chr4 154688147 154688214 -941906 + B1_Mur1 SINE Alu 40 107 -42 3 1765 227 86 0 0 chr4 154688288 154688323 -941797 + B3 SINE B2 1 35 -181 3 1765 899 223 161 27 chr4 154689062 154689417 -940703 + MTE2a LTR MaLR 13 419 0 3 1765 252 289 107 39 chr4 154689875 154690080 -940040 + L1MD2 LINE L1 5909 6127 -232 3 1765 714 198 0 0 chr4 154690305 154690431 -939689 - B1_Mus1 SINE Alu -13 135 10 3 1765 233 282 71 0 chr4 154691143 154691228 -938892 + LTR52 LTR ERVL 225 315 -106 3 1765 724 128 15 39 chr4 154692154 154692284 -937836 - B1_Mur3 SINE Alu -1 148 22 3 1765 334 296 116 90 chr4 154692161 154692350 -937770 - B4 SINE B4 -69 223 30 3 1765 212 156 0 82 chr4 154692526 154692624 -937496 + G-rich Low_complexity Low_complexity 2 91 0 3 1765 848 203 42 33 chr4 154693077 154693241 -936879 + B3 SINE B2 1 171 -45 3 1765 255 79 0 0 chr4 154693241 154693279 -936841 + (CATA)n Simple_repeat Simple_repeat 1 38 0 3 1765 848 203 42 33 chr4 154693279 154693328 -936792 + B3 SINE B2 172 216 0 3 1765 2098 27 4 0 chr4 154693358 154693616 -936504 + MERVL-int LTR ERVL 5102 5360 -125 3 1765 379 167 46 35 chr4 154693616 154693703 -936417 + ORR1A3-int LTR MaLR 553 640 -1323 3 1765 280 0 0 0 chr4 154693703 154693738 -936382 + MERVL-int LTR ERVL 5448 5482 -3 3 1765 225 0 0 0 chr4 154696065 154696090 -934030 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 3 1765 181 294 164 9 chr4 154697243 154697353 -932767 - MIRb SINE MIR -49 219 93 3 1765 924 278 15 142 chr4 154697872 154698266 -931854 + MTE2b LTR MaLR 15 358 -21 3 1765 1590 36 0 0 chr4 154700889 154701081 -929039 - B2_Mm1a SINE B2 -1 192 1 3 1765 28 68 0 14 chr4 154701144 154701181 -928939 + AT_rich Low_complexity Low_complexity 1 37 0 3 1765 609 181 257 29 chr4 154701181 154701352 -928768 - B3 SINE B2 -6 210 1 3 1765 28 68 0 14 chr4 154701352 154701388 -928732 + AT_rich Low_complexity Low_complexity 1 36 0 3 1765 364 351 18 0 chr4 154701554 154701668 -928452 + RSINE1 SINE B4 49 164 -1 3 1765 1227 262 186 6 chr4 154701695 154701889 -928231 + L1MB2 LINE L1 5477 5690 -481 3 1765 252 0 0 0 chr4 154701889 154701917 -928203 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1765 1227 262 186 6 chr4 154701917 154702232 -927888 + L1MB2 LINE L1 5691 6077 -94 3 1765 544 221 169 0 chr4 154702314 154702468 -927652 - B3A SINE B2 -17 181 2 3 1765 411 72 23 35 chr4 154702503 154702589 -927531 + (TTTTG)n Simple_repeat Simple_repeat 1 85 0 3 1765 1429 43 5 21 chr4 154702784 154702973 -927147 + B2_Mm1a SINE B2 2 187 -6 3 1765 227 326 47 0 chr4 154703182 154703268 -926852 + BC1_Mm scRNA scRNA 4 93 -59 3 1765 437 287 269 33 chr4 154703792 154704068 -926052 + MLT1A0 LTR MaLR 25 365 0 3 1765 1252 193 156 39 chr4 154704830 154705164 -924956 - ORR1D1 LTR MaLR -1 373 1 3 1765 1069 58 0 0 chr4 154705927 154706066 -924054 + B2_Mm2 SINE B2 3 141 -54 3 1765 1203 34 0 0 chr4 154706951 154707097 -923023 + B1_Mus2 SINE Alu 2 147 0 3 1765 264 175 0 17 chr4 154707337 154707395 -922725 + tRNA-Ala-GCY_ tRNA tRNA 3 59 -16 3 1765 424 281 114 20 chr4 154707410 154707559 -922561 + B4A SINE B4 1 163 -129 3 1765 339 25 0 0 chr4 154707684 154707724 -922396 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1765 458 196 22 0 chr4 154707748 154707840 -922280 + PB1D10 SINE Alu 1 94 -23 3 1765 233 294 110 8 chr4 154707922 154708049 -922071 - Arthur1 DNA Tip100 -468 3479 3340 3 1765 257 238 79 0 chr4 154708057 154708120 -922000 - PB1D10 SINE Alu -25 92 25 3 1765 230 273 106 0 chr4 154708063 154708129 -921991 - MT2B2 LTR ERVL -345 239 167 3 1765 2499 125 17 27 chr4 154708370 154708781 -921339 + MTB_Mm LTR MaLR 1 407 0 3 1765 676 196 44 32 chr4 154708889 154709047 -921073 + RSINE1 SINE B4 4 163 -2 3 1765 402 239 118 66 chr4 154709666 154709818 -920302 + RSINE1 SINE B4 4 163 -2 3 1765 828 242 61 0 chr4 154709923 154710121 -919999 + B3 SINE B2 1 210 -6 3 1765 301 253 13 0 chr4 154710139 154710214 -919906 + B4 SINE B4 2 77 -215 3 1765 297 119 0 33 chr4 154710382 154710443 -919677 - B2_Mm2 SINE B2 -6 189 131 3 1765 218 95 24 0 chr4 154710719 154710761 -919359 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1765 243 192 52 59 chr4 154710770 154710868 -919252 + B1F SINE Alu 15 147 -2 3 1765 232 234 106 53 chr4 154711753 154711866 -918254 + Charlie1a DNA MER1_type 937 1055 -400 3 1765 357 24 0 0 chr4 154711989 154712031 -918089 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1765 299 296 0 9 chr4 154712050 154712159 -917961 + PB1D10 SINE Alu 1 108 -9 3 1765 22 0 0 0 chr4 154712237 154712259 -917861 + AT_rich Low_complexity Low_complexity 1 22 0 3 1765 425 343 67 6 chr4 154712324 154712503 -917617 - B3 SINE B2 -25 191 2 3 1765 868 148 0 20 chr4 154712612 154712764 -917356 - B1_Mur3 SINE Alu 0 149 1 3 1765 207 0 0 0 chr4 154713160 154713183 -916937 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1765 405 39 0 0 chr4 154713783 154713834 -916286 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1765 252 0 0 0 chr4 154713845 154713873 -916247 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1765 603 176 160 14 chr4 154713887 154714031 -916089 - ORR1D1 LTR MaLR -209 165 1 3 1765 294 180 0 0 chr4 154714495 154714556 -915564 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1765 254 358 134 35 chr4 154714918 154715060 -915060 + RSINE1 SINE B4 6 161 -4 3 1765 369 0 0 0 chr4 154715397 154715438 -914682 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1765 216 169 203 0 chr4 154715464 154715523 -914597 + PB1 SINE Alu 30 100 -27 3 1765 439 235 10 0 chr4 154715474 154715572 -914548 + ID_B1 SINE B4 122 220 -4 3 1765 506 294 72 29 chr4 154715694 154715901 -914219 + B3 SINE B2 1 216 0 3 1765 264 197 59 29 chr4 154716224 154716292 -913828 + B1_Mur2 SINE Alu 80 149 0 3 1765 419 220 348 28 chr4 154716636 154716850 -913270 + B4A SINE B4 9 291 -1 3 1765 255 149 0 21 chr4 154720759 154720807 -909313 + B4A SINE B4 90 136 -156 3 1765 364 167 189 0 chr4 154720764 154720854 -909266 + PB1D10 SINE Alu 9 115 -2 3 1765 316 289 199 26 chr4 154720930 154721161 -908959 + MER58B DNA MER1_type 71 341 0 3 1765 2164 129 106 54 chr4 154721637 154722080 -908040 - RMER4A LTR ERVK 0 466 1 3 1765 524 211 15 68 chr4 154722213 154722345 -907775 - ID_B1 SINE B4 -1 223 99 3 1765 1087 96 0 0 chr4 154722472 154722618 -907502 + B1_Mus1 SINE Alu 2 147 -1 3 1765 34 0 0 0 chr4 154722618 154722652 -907468 + AT_rich Low_complexity Low_complexity 1 34 0 3 1765 182 263 35 0 chr4 154722703 154722760 -907360 - MIRm SINE MIR -205 71 13 3 1765 794 123 14 14 chr4 154723346 154723486 -906634 + B1_Mur4 SINE Alu 9 148 -2 3 1765 239 221 99 49 chr4 154723539 154723620 -906500 + MLT1D LTR MaLR 90 174 -331 3 1765 933 115 50 85 chr4 154723645 154723845 -906275 + B2_Mm2 SINE B2 2 194 -1 3 1765 754 274 106 59 chr4 154723846 154723966 -906154 + L1M3 LINE L1 3732 3842 -2298 3 1765 753 219 35 56 chr4 154723966 154724164 -905956 + B3A SINE B2 5 198 0 3 1765 754 274 106 59 chr4 154724164 154724551 -905569 + L1M3 LINE L1 3843 4263 -1877 3 1765 738 196 207 0 chr4 154724649 154724828 -905292 + B3 SINE B2 1 216 0 3 1765 302 242 15 0 chr4 154724854 154724920 -905200 + PB1 SINE Alu 50 116 -11 3 1765 1122 85 29 78 chr4 154724999 154725203 -904917 + B2_Mm2 SINE B2 1 194 -1 3 1765 786 158 65 0 chr4 154725210 154725349 -904771 + B1_Mus1 SINE Alu 1 148 0 3 1765 2365 69 0 0 chr4 154725485 154725804 -904316 + ORR1A2 LTR MaLR 1 319 -8 3 1765 477 0 0 0 chr4 154727109 154727162 -902958 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3 1765 293 285 206 8 chr4 154727180 154727311 -902809 - RSINE1 SINE B4 -7 158 2 3 1765 3032 12 0 0 chr4 154727593 154727939 -902181 + ORR1A0 LTR MaLR 1 346 0 3 1765 1089 188 34 15 chr4 154728528 154728733 -901387 + B3 SINE B2 3 211 -5 3 1765 503 179 0 54 chr4 154728957 154729069 -901051 - PB1D9 SINE Alu -14 106 1 3 1765 22 56 0 0 chr4 154729206 154729242 -900878 + AT_rich Low_complexity Low_complexity 1 36 0 3 1765 1103 71 0 0 chr4 154729310 154729451 -900669 + B1_Mus1 SINE Alu 2 142 -6 3 1765 262 303 0 38 chr4 154729490 154729569 -900551 - ID4_ SINE ID -7 76 1 3 1765 262 309 103 24 chr4 154729581 154729707 -900413 - ID_B1 SINE B4 -2 222 87 3 1765 634 249 23 72 chr4 154729847 154730068 -900052 - B3 SINE B2 -6 210 1 3 1765 876 246 70 43 chr4 154730159 154730466 -899654 + MTD LTR MaLR 13 339 -68 3 1765 203 144 42 53 chr4 154731139 154731234 -898886 + GA-rich Low_complexity Low_complexity 2 95 0 3 1765 264 345 17 8 chr4 154733591 154733711 -896409 + G-rich Low_complexity Low_complexity 1 121 0 3 1765 270 56 0 0 chr4 154734912 154734948 -895172 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1765 24 0 0 0 chr4 154735637 154735661 -894459 + GC_rich Low_complexity Low_complexity 1 24 0 3 1765 457 262 50 84 chr4 154736234 154736256 -893864 - B4 SINE B4 -50 242 154 3 1765 766 151 22 0 chr4 154736256 154736395 -893725 - B1_Mus1 SINE Alu 0 148 7 3 1765 457 262 50 84 chr4 154736395 154736413 -893707 - B4 SINE B4 -50 153 70 3 1765 23 0 0 0 chr4 154736426 154736449 -893671 + AT_rich Low_complexity Low_complexity 1 23 0 4 1765 492 176 106 96 chr4 154736707 154736895 -893225 - B3 SINE B2 -4 212 23 4 1765 497 195 70 17 chr4 154737011 154737082 -893038 - B1_Mus2 SINE Alu -26 121 43 4 1765 207 0 0 0 chr4 154737082 154737105 -893015 + (CCCCCG)n Simple_repeat Simple_repeat 2 24 0 4 1765 497 195 70 17 chr4 154737105 154737148 -892972 - B1_Mus2 SINE Alu -105 42 1 4 1765 218 56 28 0 chr4 154737240 154737276 -892844 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1765 1448 48 11 0 chr4 154737534 154737722 -892398 + B2_Mm1t SINE B2 1 190 -3 4 1765 651 220 137 6 chr4 154737738 154737921 -892199 + B3 SINE B2 7 213 -3 4 1765 1138 60 0 0 chr4 154737930 154738079 -892041 + B2_Mm2 SINE B2 2 150 -45 4 1765 1789 197 112 128 chr4 154738610 154739180 -890940 - RMER13A LTR ERVK -39 821 261 4 1765 1068 95 0 0 chr4 154739180 154739328 -890792 + B1_Mus1 SINE Alu 1 148 0 4 1765 4523 109 79 6 chr4 154739456 154740141 -889979 + RMER19A LTR ERVK 1 735 -2 4 1765 1099 158 331 3 chr4 154740919 154741236 -888884 - MTC LTR MaLR 0 421 1 4 1765 240 279 22 34 chr4 154741768 154741857 -888263 + B4A SINE B4 72 159 -133 4 1765 1032 276 157 12 chr4 154741925 154742270 -887850 - MTD LTR MaLR -24 395 1 4 1765 1208 98 5 21 chr4 154742334 154742522 -887598 - B2_Mm2 SINE B2 -9 186 2 4 1765 316 262 96 10 chr4 154743343 154743447 -886673 + PB1 SINE Alu 13 125 -2 4 1765 451 228 53 0 chr4 154743680 154743794 -886326 + ID_B1 SINE B4 5 124 -100 4 1765 640 194 14 56 chr4 154743883 154744025 -886095 + B1_Mur3 SINE Alu 1 136 -13 4 1765 349 297 126 12 chr4 154744081 154744248 -885872 + L1MD3 LINE L1 7788 7973 -22 4 1765 356 257 123 71 chr4 154744277 154744432 -885688 - RSINE1 SINE B4 0 165 3 4 1765 1049 109 0 9 chr4 154744513 154744735 -885385 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 1765 250 281 0 0 chr4 154746894 154746951 -883169 - B1F SINE Alu -7 142 86 4 1765 1567 16 11 0 chr4 154747090 154747274 -882846 + B2_Mm1a SINE B2 1 186 -7 4 1765 35 24 0 0 chr4 154747281 154747323 -882797 + AT_rich Low_complexity Low_complexity 1 42 0 4 1765 1352 43 48 5 chr4 154747385 154747571 -882549 - B2_Mm2 SINE B2 -1 194 1 4 1765 1018 65 50 0 chr4 154747581 154747720 -882400 - B1_Mus2 SINE Alu -1 146 1 4 1765 360 0 0 0 chr4 154747790 154747830 -882290 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1765 291 54 0 0 chr4 154747830 154747866 -882254 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1765 245 241 26 25 chr4 154748604 154748691 -881429 - B1_Mur4 SINE Alu -51 98 11 4 1765 800 195 0 13 chr4 154748961 154749112 -881008 + B1_Mur4 SINE Alu 1 149 -1 4 1765 899 156 64 43 chr4 154749578 154749766 -880354 - B2_Mm2 SINE B2 -2 193 2 4 1765 269 272 124 31 chr4 154750184 154750313 -879807 - MLT1D LTR MaLR 0 505 365 4 1765 2495 95 3 13 chr4 154750564 154750937 -879183 + MT2B2 LTR ERVL 1 369 -215 4 1765 338 184 211 0 chr4 154751093 154751169 -878951 + RMER21B LTR ERV1 350 441 -401 4 1765 1154 99 55 0 chr4 154751449 154751630 -878490 + B2_Mm2 SINE B2 1 191 -4 4 1765 975 23 131 0 chr4 154751634 154751764 -878356 + B1_Mus2 SINE Alu 1 147 0 4 1765 241 153 25 111 chr4 154751791 154751872 -878248 - RMER21A LTR ERV1 -480 467 394 4 1765 1706 214 98 2 chr4 154752061 154752469 -877651 + RodERV21-int LTR ERV1 16 462 -4529 4 1765 2835 141 28 39 chr4 154752524 154753091 -877029 - RLTR31_Mm LTR ERVK 0 561 1 4 1765 4519 207 67 7 chr4 154753218 154754147 -875973 + RodERV21-int LTR ERV1 3766 4750 -241 4 1765 1110 149 0 30 chr4 154754154 154754183 -875937 - B2_Mm2 SINE B2 0 195 168 4 1765 1173 41 0 0 chr4 154754183 154754328 -875792 + B1_Mus2 SINE Alu 1 145 -2 4 1765 1110 149 0 30 chr4 154754328 154754344 -875776 - B2_Mm2 SINE B2 -28 167 156 4 1765 387 0 0 0 chr4 154754344 154754387 -875733 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1765 1110 149 0 30 chr4 154754387 154754540 -875580 - B2_Mm2 SINE B2 -40 155 3 4 1765 1153 68 0 0 chr4 154754574 154754720 -875400 + B1_Mus2 SINE Alu 2 147 0 4 1765 1237 101 17 0 chr4 154754730 154754908 -875212 - B2_Mm2 SINE B2 -14 181 1 4 1765 470 136 33 22 chr4 154754910 154755000 -875120 + RodERV21-int LTR ERV1 4736 4826 -165 4 1765 420 255 0 36 chr4 154755000 154755110 -875010 + RMER4B LTR ERVK 345 450 -135 4 1765 545 239 199 11 chr4 154755240 154755426 -874694 + RMER21B LTR ERV1 347 567 -275 4 1765 411 197 62 0 chr4 154756266 154756378 -873742 + MLT1C LTR MaLR 46 174 -216 4 1765 21 0 0 0 chr4 154764039 154764060 -866060 + AT_rich Low_complexity Low_complexity 1 21 0 4 1765 556 254 17 17 chr4 154764302 154764418 -865702 + B1_Mur1 SINE Alu 23 138 -11 4 1765 297 0 0 0 chr4 154764419 154764452 -865668 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1765 533 281 224 3 chr4 154764736 154765071 -865049 + MLT1C LTR MaLR 59 467 0 4 1765 1042 58 7 0 chr4 154765261 154765399 -864721 + B1_Mm SINE Alu 2 140 -7 4 1765 261 0 0 0 chr4 154765768 154765797 -864323 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1765 453 157 0 0 chr4 154766194 154766253 -863867 + polypyrimidine Low_complexity Low_complexity 34 92 0 4 1765 1175 54 0 0 chr4 154766253 154766400 -863720 - B1_Mus2 SINE Alu 0 147 1 4 1765 453 157 0 0 chr4 154766400 154766429 -863691 + polypyrimidine Low_complexity Low_complexity 5 33 0 4 1765 1473 39 0 0 chr4 154766431 154766611 -863509 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1765 446 234 153 0 chr4 154766611 154766735 -863385 - B1_Mur2 SINE Alu -6 143 1 4 1765 495 220 71 63 chr4 154767260 154767386 -862734 - B4 SINE B4 0 292 166 4 1765 747 176 12 19 chr4 154767386 154767571 -862549 + ORR1B1 LTR MaLR 1 160 -207 4 1765 597 253 100 0 chr4 154767993 154768143 -861977 + ID_B1 SINE B4 60 224 0 4 1765 531 118 0 0 chr4 154768189 154768274 -861846 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1765 952 110 0 0 chr4 154769123 154769268 -860852 - B1_Mm SINE Alu -1 146 2 4 1765 462 202 14 104 chr4 154769268 154769301 -860819 - MT2B LTR ERVL -448 153 134 4 1765 270 176 0 0 chr4 154770493 154770544 -859576 + T-rich Low_complexity Low_complexity 1 51 0 4 1765 340 293 51 39 chr4 154770598 154770754 -859366 - MER46C DNA MER2_type -157 181 24 4 1765 249 33 0 0 chr4 154772213 154772243 -857877 + (CCCCG)n Simple_repeat Simple_repeat 2 31 0 4 1765 996 124 136 36 chr4 154772880 154773131 -856989 - Lx9 LINE L1 0 7644 7369 4 1765 261 278 109 40 chr4 154773291 154773392 -856728 + PB1 SINE Alu 10 117 -10 4 1765 237 33 0 0 chr4 154773483 154773513 -856607 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1765 517 237 17 26 chr4 154773515 154773632 -856488 - ID_B1 SINE B4 -7 217 102 4 1765 897 138 20 69 chr4 154773871 154774074 -856046 - B2_Mm2 SINE B2 -1 194 2 4 1765 816 177 0 0 chr4 154774418 154774559 -855561 - B1_Mur4 SINE Alu -5 145 5 4 1765 539 275 81 6 chr4 154774562 154774734 -855386 + B3 SINE B2 30 214 -2 4 1765 270 271 29 0 chr4 154774832 154774902 -855218 + MTEa LTR MaLR 5 76 -303 4 1765 702 233 11 91 chr4 154774895 154775070 -855050 + MTEa LTR MaLR 204 364 -15 4 1765 1593 36 0 0 chr4 154776215 154776408 -853712 - B2_Mm1a SINE B2 0 193 1 4 1765 395 258 125 0 chr4 154776460 154776580 -853540 + B1F SINE Alu 1 135 -14 4 1765 1326 98 0 8 chr4 154776885 154777381 -852739 + (CCCCAG)n Simple_repeat Simple_repeat 1 492 0 4 1765 229 190 52 0 chr4 154777571 154777629 -852491 - PB1D9 SINE Alu -50 70 10 4 1765 1032 291 44 25 chr4 154777635 154778125 -851995 - L1M5 LINE L1 -2177 5818 5300 4 1765 913 158 0 20 chr4 154778236 154778385 -851735 - B1_Mus1 SINE Alu -1 147 2 4 1765 236 240 6 104 chr4 154778385 154778440 -851680 - ORR1B1-int LTR MaLR -863 646 608 4 1765 1521 207 90 6 chr4 154778505 154778850 -851270 + ORR1D1 LTR MaLR 1 374 0 4 1765 235 239 13 78 chr4 154778883 154778960 -851160 - L1MEc LINE L1 -6248 152 81 4 1765 27 62 0 15 chr4 154779100 154779117 -851003 + AT_rich Low_complexity Low_complexity 1 17 0 4 1765 1087 239 0 18 chr4 154779117 154779334 -850786 + B3 SINE B2 1 213 -3 4 1765 27 62 0 15 chr4 154779334 154779382 -850738 + AT_rich Low_complexity Low_complexity 1 48 0 4 1765 261 0 0 0 chr4 154779382 154779411 -850709 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1765 859 191 6 0 chr4 154779428 154779585 -850535 - B3A SINE B2 -39 159 2 4 1765 593 273 55 60 chr4 154779609 154779792 -850328 - B3A SINE B2 0 198 17 4 1765 1158 70 0 0 chr4 154779798 154779955 -850165 + (CA)n Simple_repeat Simple_repeat 1 157 0 4 1765 1106 71 21 0 chr4 154779955 154780096 -850024 - B1_Mus2 SINE Alu -2 145 2 4 1765 1106 218 19 0 chr4 154780114 154780325 -849795 - ID_B1 SINE B4 0 224 10 4 1765 1948 104 101 0 chr4 154780606 154780903 -849217 - ORR1A2 LTR MaLR 0 327 1 4 1765 1148 111 0 6 chr4 154781883 154782064 -848056 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1765 1239 48 7 0 chr4 154782127 154782273 -847847 + B1_Mus2 SINE Alu 1 147 0 4 1765 927 143 14 7 chr4 154784327 154784468 -845652 - B1_Mur3 SINE Alu -7 142 1 4 1765 342 266 25 0 chr4 154784509 154784588 -845532 + MLT1C LTR MaLR 381 461 -6 4 1765 295 311 190 55 chr4 154784659 154784986 -845134 + MLT1D LTR MaLR 7 377 -128 4 1765 630 142 200 0 chr4 154785220 154785340 -844780 + B1_Mur4 SINE Alu 2 145 -5 4 1765 968 54 139 0 chr4 154785454 154785583 -844537 + B1_Mus2 SINE Alu 1 147 0 4 1765 3033 131 62 57 chr4 154785613 154786162 -843958 + RMER4B LTR ERVK 34 585 0 5 1765 278 233 176 11 chr4 154786182 154786273 -843847 + PB1D10 SINE Alu 12 117 0 5 1765 822 166 0 46 chr4 154786522 154786674 -843446 - URR1A DNA MER1_type -4 222 78 5 1765 1204 54 0 13 chr4 154786759 154786908 -843212 + B1_Mus2 SINE Alu 1 147 0 5 1765 834 76 20 20 chr4 154787179 154787327 -842793 + (TTCTC)n Simple_repeat Simple_repeat 5 152 0 5 1765 279 79 0 0 chr4 154787327 154787365 -842755 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 5 1765 1094 101 0 0 chr4 154787387 154787535 -842585 - B1_Mus1 SINE Alu 0 148 1 5 1765 505 333 50 0 chr4 154788410 154788551 -841569 + B3A SINE B2 1 148 -50 5 1765 414 0 0 0 chr4 154788552 154788598 -841522 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1765 526 275 49 0 chr4 154789036 154789178 -840942 - RSINE1 SINE B4 -14 151 3 5 1765 1283 47 0 0 chr4 154789420 154789568 -840552 - B1_Mus1 SINE Alu 0 148 1 5 1765 390 276 167 33 chr4 154790005 154790185 -839935 - HAL1 LINE L1 -921 1586 1383 5 1765 462 232 0 38 chr4 154790212 154790396 -839724 + (ACCTG)n Simple_repeat Simple_repeat 3 179 0 5 1765 399 242 0 44 chr4 154790415 154790899 -839221 + (ACCTG)n Simple_repeat Simple_repeat 1 462 0 5 1765 827 232 98 0 chr4 154791106 154791300 -838820 + B3 SINE B2 1 213 -3 5 1765 667 264 20 7 chr4 154791314 154791463 -838657 - RSINE1 SINE B4 -12 153 3 5 1765 686 204 22 15 chr4 154791567 154791701 -838419 + B1_Mur2 SINE Alu 2 136 -13 5 1765 335 262 0 23 chr4 154791703 154791789 -838331 + PB1D7 SINE Alu 36 119 -1 5 1765 1203 61 0 20 chr4 154791993 154792144 -837976 - B1_Mus1 SINE Alu 0 148 1 5 1765 752 105 0 0 chr4 154792273 154792387 -837733 + BC1_Mm scRNA scRNA 1 114 -38 5 1765 297 0 0 0 chr4 154792469 154792502 -837618 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1765 360 64 0 0 chr4 154793183 154793230 -836890 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1765 1441 94 5 0 chr4 154793230 154793421 -836699 - B2_Mm1t SINE B2 0 193 2 5 1765 947 297 85 4 chr4 154794658 154794918 -835202 + B4A SINE B4 9 289 -3 5 1765 254 296 92 9 chr4 154795124 154795233 -834887 - PB1D7 SINE Alu -2 118 1 5 220 2154 125 41 41 chr4 154795790 154796157 -833963 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1766 718 183 34 34 chr4 154797839 154797986 -832134 + B1_Mur3 SINE Alu 3 149 0 5 1766 252 0 0 0 chr4 154799508 154799536 -830584 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1766 639 169 186 0 chr4 154801706 154801830 -828290 + B1_Mus1 SINE Alu 2 148 0 5 1766 691 284 73 6 chr4 154802021 154802198 -827922 - B3A SINE B2 -8 190 2 5 1766 313 176 0 29 chr4 154802785 154802890 -827230 + (TCTCTG)n Simple_repeat Simple_repeat 1 102 0 5 1766 478 161 23 35 chr4 154802933 154803107 -827013 + (TCTCTG)n Simple_repeat Simple_repeat 2 173 0 5 1766 502 220 85 8 chr4 154804571 154804707 -825413 - B1F SINE Alu 0 149 3 5 1766 3729 110 60 14 chr4 154804806 154805157 -824963 - RMER6A LTR ERVK 0 756 378 5 1766 285 29 0 0 chr4 154805157 154805191 -824929 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1766 3729 108 311 13 chr4 154805191 154805490 -824630 - RMER6A LTR ERVK -379 377 2 5 1766 407 144 0 30 chr4 154805947 154805990 -824130 + T-rich Low_complexity Low_complexity 55 97 0 5 1766 1287 40 0 0 chr4 154805990 154806138 -823982 - B1_Mus1 SINE Alu 0 148 1 5 1766 407 144 0 30 chr4 154806138 154806194 -823926 + T-rich Low_complexity Low_complexity 2 54 0 5 1766 644 121 32 65 chr4 154806197 154806321 -823799 - PB1D9 SINE Alu 0 120 1 5 1766 468 343 85 97 chr4 154806417 154806934 -823186 - L1MEd LINE L1 -4863 1256 746 5 1766 400 314 44 0 chr4 154807050 154807187 -822933 - B4 SINE B4 -149 143 1 5 1766 1168 82 0 0 chr4 154807273 154807420 -822700 + B1_Mus1 SINE Alu 2 148 0 5 1766 2506 162 17 17 chr4 154807561 154807982 -822138 - MTC LTR MaLR 0 421 1 5 1766 317 159 0 0 chr4 154808577 154808640 -821480 + CT-rich Low_complexity Low_complexity 4 66 0 5 1766 853 176 0 0 chr4 154808640 154808776 -821344 - B1_Mur2 SINE Alu -13 136 1 5 1766 271 217 47 35 chr4 154808776 154808862 -821258 - L1ME2z LINE L1 -6 6438 6352 5 1766 322 164 192 0 chr4 154809725 154809798 -820322 + B3 SINE B2 123 209 -7 5 1766 1230 48 0 7 chr4 154811139 154811285 -818835 + B1_Mus2 SINE Alu 1 145 -2 5 1766 180 0 0 0 chr4 154811286 154811306 -818814 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 5 1766 557 100 0 11 chr4 154813112 154813203 -816917 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 5 1766 676 202 15 8 chr4 154813244 154813374 -816746 - B1_Mus2 SINE Alu 0 147 17 5 1766 248 240 178 28 chr4 154813288 154813395 -816725 - RLTR25B LTR ERVK -519 509 387 5 1766 1520 72 0 5 chr4 154813407 154813602 -816518 + B2_Mm2 SINE B2 2 195 0 5 1766 783 179 0 0 chr4 154814360 154814483 -815637 + B1_Mus1 SINE Alu 3 125 -23 5 1766 444 252 72 65 chr4 154814483 154814507 -815613 + MT2B LTR ERVL 186 314 -287 5 1766 323 305 70 19 chr4 154814507 154814721 -815399 - L1MC LINE L1 -1295 4851 4627 5 1766 351 113 0 0 chr4 154814723 154814776 -815344 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1766 480 196 136 10 chr4 154814833 154814936 -815184 + ID_B1 SINE B4 109 224 0 5 1766 629 177 90 30 chr4 154814947 154815081 -815039 + B1_Mur3 SINE Alu 2 143 -6 5 1766 230 216 90 30 chr4 154815109 154815209 -814911 - L1M5 LINE L1 -1526 4620 4515 5 1766 745 268 139 19 chr4 154816630 154816889 -813231 - B4A SINE B4 -1 291 2 5 1766 1084 161 118 10 chr4 154817012 154817207 -812913 + B3 SINE B2 1 216 0 5 1766 782 145 53 0 chr4 154817213 154817344 -812776 + B1_Mus1 SINE Alu 1 138 -10 5 1766 999 73 0 20 chr4 154817391 154817544 -812576 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 5 1766 4153 161 89 10 chr4 154817547 154817849 -812271 + L1_Mur2 LINE L1 2906 3238 -2639 5 1766 3265 48 0 22 chr4 154817849 154818254 -811866 + MTA_Mm LTR MaLR 1 396 0 5 1766 4153 161 89 10 chr4 154818254 154818842 -811278 + L1_Mur2 LINE L1 3239 3866 -2011 5 1766 510 78 0 4 chr4 154818842 154818916 -811204 + B2_Mm1t SINE B2 38 109 -107 5 1766 310 78 0 19 chr4 154818905 154818957 -811163 + B2_Mm2 SINE B2 137 187 -8 5 1766 294 29 0 0 chr4 154819022 154819057 -811063 + (TTAGGG)n Simple_repeat Simple_repeat 6 40 0 5 1766 403 266 121 19 chr4 154819057 154819214 -810906 + Lx8 LINE L1 6775 6947 -526 5 1766 1515 40 0 0 chr4 154819394 154819878 -810242 + (TGG)n Simple_repeat Simple_repeat 1 484 0 5 1766 519 237 108 17 chr4 154819879 154819999 -810121 - B1_Mur1 SINE Alu -14 135 5 5 1766 253 273 172 7 chr4 154820930 154821081 -809039 + MLT1D LTR MaLR 63 238 -389 5 1766 988 125 0 19 chr4 154821100 154821255 -808865 + B2_Mm2 SINE B2 44 195 0 5 1766 388 327 47 6 chr4 154821247 154821416 -808704 + MLT1D LTR MaLR 324 499 -6 5 1766 2574 143 119 68 chr4 154822785 154823341 -806779 + RMER4B LTR ERVK 2 585 0 5 1766 645 153 154 17 chr4 154823922 154824080 -806040 + B3 SINE B2 1 184 -11 5 1766 474 274 0 49 chr4 154824429 154824552 -805568 + PB1D10 SINE Alu 1 117 0 5 1766 189 0 0 0 chr4 154824554 154824575 -805545 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 1766 343 260 50 140 chr4 154824583 154824762 -805358 + RSINE1 SINE B4 1 163 -2 5 1766 405 30 45 15 chr4 154824769 154824836 -805284 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 5 1766 1102 58 65 0 chr4 154824838 154824976 -805144 - B1_Mm SINE Alu 0 147 1 5 1766 27 0 0 0 chr4 154824979 154825006 -805114 + AT_rich Low_complexity Low_complexity 1 27 0 5 1766 317 159 9 193 chr4 154825006 154825115 -805005 + MT2B LTR ERVL 169 257 -344 5 1766 605 145 87 71 chr4 154825017 154825143 -804977 + B1_Mur2 SINE Alu 16 143 -6 5 1766 27 0 0 0 chr4 154825143 154825170 -804950 + AT_rich Low_complexity Low_complexity 1 27 0 5 1766 724 236 70 93 chr4 154825172 154825349 -804771 - B3 SINE B2 -5 211 39 5 1766 1751 16 0 0 chr4 154825349 154825541 -804579 - B2_Mm1a SINE B2 0 193 2 5 1766 724 236 70 93 chr4 154825541 154825578 -804542 - B3 SINE B2 -178 38 2 5 1766 27 73 0 0 chr4 154826621 154826676 -803444 + AT_rich Low_complexity Low_complexity 1 55 0 5 1766 234 180 197 0 chr4 154826772 154826833 -803287 - ID2 SINE ID -10 73 1 5 1766 236 337 36 0 chr4 154826960 154827043 -803077 + RSINE1 SINE B4 46 131 -34 5 1766 595 214 18 0 chr4 154827197 154827309 -802811 - PB1D9 SINE Alu -6 114 1 5 1766 210 229 0 0 chr4 154827424 154827459 -802661 - PB1D9 SINE Alu -85 35 1 5 1766 1161 239 74 49 chr4 154827530 154827896 -802224 - Lx6 LINE L1 -9 7451 7077 5 1766 253 384 0 0 chr4 154828617 154828794 -801326 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1766 315 179 0 0 chr4 154829514 154829581 -800539 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1766 290 265 44 0 chr4 154830337 154830405 -799715 + ID_B1 SINE B4 104 174 -50 5 1766 396 203 0 197 chr4 154830392 154830539 -799581 + MT2B LTR ERVL 147 264 -337 5 1766 1071 45 0 0 chr4 154830440 154830574 -799546 + B1_Mus2 SINE Alu 14 147 0 5 1766 226 67 44 0 chr4 154830574 154830619 -799501 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1766 636 308 46 10 chr4 154830637 154830834 -799286 + B3 SINE B2 1 204 -12 5 1766 862 81 89 0 chr4 154830844 154830968 -799152 - B1_Mus2 SINE Alu -1 146 12 5 1766 397 226 132 88 chr4 154830846 154830982 -799138 - B4 SINE B4 -69 223 82 5 1766 662 230 70 21 chr4 154831008 154831150 -798970 + B1_Mur2 SINE Alu 1 149 0 6 1766 198 0 0 0 chr4 154831373 154831395 -798725 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1766 1012 157 0 0 chr4 154831456 154831603 -798517 + B1_Mur3 SINE Alu 2 148 -1 6 1766 416 73 0 0 chr4 154831603 154831658 -798462 + B1_Mm SINE Alu 92 146 -1 6 1766 198 103 0 0 chr4 154831658 154831687 -798433 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 6 1766 347 292 28 19 chr4 154831687 154831793 -798327 + RSINE1 SINE B4 82 272 -20 6 1766 1345 80 11 0 chr4 154831810 154831986 -798134 + B2_Mm1t SINE B2 1 178 -15 6 1766 193 196 18 18 chr4 154831989 154832046 -798074 + (CATA)n Simple_repeat Simple_repeat 2 58 0 6 1766 1195 44 0 0 chr4 154832170 154832306 -797814 + B1_Mus2 SINE Alu 1 136 -11 6 1766 315 0 0 0 chr4 154832306 154832341 -797779 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1766 253 284 155 12 chr4 154832344 154832482 -797638 + B3 SINE B2 34 204 -12 6 1766 804 128 13 78 chr4 154832608 154832761 -797359 + B1_Mus2 SINE Alu 5 147 0 6 1766 588 256 22 14 chr4 154832851 154832990 -797130 + ID_B1 SINE B4 1 140 -84 6 1766 804 267 21 0 chr4 154833067 154833254 -796866 - B3 SINE B2 -2 214 24 6 1766 870 157 24 30 chr4 154833340 154833504 -796616 + URR1A DNA MER1_type 64 226 0 6 1766 243 0 0 0 chr4 154833534 154833561 -796559 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1766 1169 64 0 0 chr4 154833563 154833703 -796417 - B1_Mus2 SINE Alu -5 142 3 6 1766 501 248 53 23 chr4 154834633 154834765 -795355 + B1_Mus2 SINE Alu 1 136 -11 6 1766 622 24 88 0 chr4 154834785 154834910 -795210 + (GA)n Simple_repeat Simple_repeat 1 136 0 6 1766 186 250 57 19 chr4 154840235 154840288 -789832 + MER5A DNA MER1_type 1 55 -134 6 1766 468 51 0 0 chr4 154840717 154840776 -789344 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1766 257 0 0 29 chr4 154841480 154841514 -788606 + (CCTG)n Simple_repeat Simple_repeat 1 33 0 6 1766 1214 97 6 28 chr4 154842551 154842731 -787389 + B2_Mm2 SINE B2 2 177 -18 6 1766 351 0 0 0 chr4 154843033 154843072 -787048 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1766 244 64 21 21 chr4 154846101 154846149 -783971 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 6 1766 378 57 0 0 chr4 154846789 154846842 -783278 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1766 233 167 18 36 chr4 154846886 154846942 -783178 + B3A SINE B2 2 56 -142 6 1766 2214 111 11 68 chr4 154848033 154848334 -781786 + ORR1A1 LTR MaLR 1 303 -43 6 1766 1216 69 0 0 chr4 154848334 154848479 -781641 + B1_Mus2 SINE Alu 1 145 -2 6 1766 193 29 29 29 chr4 154848479 154848514 -781606 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1766 2214 111 11 68 chr4 154848514 154848526 -781594 + ORR1A1 LTR MaLR 304 304 -42 6 1766 2010 176 52 0 chr4 154848526 154848889 -781231 + Lx LINE L1 6268 6649 -5 6 1766 2214 111 11 68 chr4 154848889 154848940 -781180 + ORR1A1 LTR MaLR 304 345 -1 6 1766 288 0 0 0 chr4 154849511 154849543 -780577 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1766 627 256 57 21 chr4 154849549 154849689 -780431 - RSINE1 SINE B4 -19 146 2 6 1766 259 292 66 8 chr4 154849717 154849838 -780282 - L1M3 LINE L1 -345 5823 5696 6 1766 665 245 85 45 chr4 154849838 154850039 -780081 + MLT2D LTR ERVL 80 288 -126 6 1766 252 0 0 0 chr4 154850112 154850140 -779980 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1766 708 232 59 12 chr4 154850363 154850533 -779587 - MTE2a LTR MaLR 0 379 202 6 1766 1383 99 16 0 chr4 154850533 154850725 -779395 + B2_Mm2 SINE B2 1 195 0 6 1766 1125 88 7 0 chr4 154850734 154850881 -779239 + B1_Mus1 SINE Alu 1 148 0 6 1766 1231 36 0 0 chr4 154850885 154851025 -779095 + B1_Mus2 SINE Alu 2 141 -6 6 1766 794 91 0 8 chr4 154851027 154851149 -778971 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 6 1766 1049 40 0 0 chr4 154851156 154851282 -778838 + B1_Mus1 SINE Alu 15 140 -8 6 1766 319 322 144 38 chr4 154851318 154851554 -778566 - MTD LTR MaLR -144 275 15 6 1766 275 218 150 26 chr4 154851802 154851915 -778205 + RMER10A LTR ERVL 252 378 -64 6 1766 1287 68 50 28 chr4 154852802 154852983 -777137 - B2_Mm2 SINE B2 -9 186 2 6 1766 1226 99 17 0 chr4 154852994 154853016 -777104 - B2_Mm1t SINE B2 -8 185 162 6 1766 387 0 0 0 chr4 154853016 154853059 -777061 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 1766 1250 64 0 0 chr4 154853059 154853217 -776903 - B2_Mm2 SINE B2 -32 161 2 6 1766 1450 63 32 0 chr4 154853248 154853437 -776683 - B2_Mm2 SINE B2 0 195 1 6 1766 360 266 15 45 chr4 154853455 154853589 -776531 + L1M3 LINE L1 5315 5444 -739 6 1766 673 107 8 8 chr4 154853690 154853813 -776307 + (CA)n Simple_repeat Simple_repeat 1 123 0 6 1766 860 188 14 0 chr4 154854258 154854402 -775718 - B1_Mus1 SINE Alu 0 148 3 6 1766 439 285 33 26 chr4 154854414 154854586 -775534 - B3 SINE B2 0 195 26 6 1766 780 280 39 24 chr4 154854604 154854809 -775311 - B3 SINE B2 -1 215 8 6 1766 1844 98 197 29 chr4 154854809 154855124 -774996 + RLTR9A LTR ERVK 1 368 0 6 1766 215 365 21 10 chr4 154855133 154855230 -774890 - PB1D7 SINE Alu -1 119 22 6 1766 735 163 8 0 chr4 154855360 154855483 -774637 + B1_Mus2 SINE Alu 24 147 0 6 1766 688 197 0 0 chr4 154856569 154856686 -773434 + B1_Mur2 SINE Alu 13 129 -20 6 1766 536 211 0 37 chr4 154856759 154856867 -773253 + PB1D9 SINE Alu 3 106 -14 6 1766 296 64 21 0 chr4 154856867 154856914 -773206 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 1766 216 195 0 0 chr4 154858043 154858084 -772036 + B1_Mur4 SINE Alu 9 49 -101 6 1766 222 37 0 0 chr4 154858084 154858111 -772009 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 6 1766 558 211 8 42 chr4 154858174 154858293 -771827 + ID_B1 SINE B4 103 217 -7 6 1766 324 0 0 0 chr4 154858296 154858332 -771788 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1766 399 151 115 62 chr4 154858343 154858456 -771664 + PB1D9 SINE Alu 2 120 0 6 1766 1127 202 0 11 chr4 154858456 154858641 -771479 - B3 SINE B2 -27 189 6 6 1766 186 43 0 0 chr4 154858783 154858806 -771314 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 6 1766 779 197 0 0 chr4 154860428 154860555 -769565 - B3 SINE B2 -89 127 1 6 1766 536 279 13 26 chr4 154860559 154860710 -769410 - B1_Mur1 SINE Alu 0 149 1 6 1766 268 206 323 20 chr4 154861413 154861512 -768608 - RSINE1 SINE B4 -35 130 2 6 1766 259 245 118 39 chr4 154861519 154861621 -768499 - PB1D10 SINE Alu -7 110 1 6 1766 271 258 13 15 chr4 154863148 154863231 -766889 + PB1D10 SINE Alu 27 112 -37 6 1766 342 288 122 21 chr4 154864479 154864667 -765453 + L1MC4 LINE L1 6671 6877 -1165 6 1766 194 0 0 37 chr4 154865315 154865342 -764778 + (GGGTG)n Simple_repeat Simple_repeat 3 28 0 6 1766 268 119 0 33 chr4 154865513 154865574 -764546 + (CGG)n Simple_repeat Simple_repeat 2 60 0 6 1766 21 71 0 0 chr4 154865869 154865911 -764209 + GC_rich Low_complexity Low_complexity 1 42 0 6 1766 732 186 157 6 chr4 154866916 154867094 -763026 - B3 SINE B2 -11 205 1 6 1766 1263 76 32 32 chr4 154868461 154868651 -761469 + B2_Mm2 SINE B2 2 191 -4 6 1766 272 294 11 56 chr4 154868665 154868755 -761365 + RSINE1 SINE B4 25 110 -55 6 1766 946 80 43 7 chr4 154868875 154869014 -761106 + B1_Mm SINE Alu 1 144 -3 6 1766 527 224 69 0 chr4 154869309 154869425 -760695 - B1F SINE Alu -25 124 1 6 1766 195 42 0 0 chr4 154869519 154869543 -760577 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1766 327 197 42 0 chr4 154869546 154869617 -760503 - B3 SINE B2 -8 208 135 6 1766 236 150 0 0 chr4 154869641 154869681 -760439 - B1_Mm SINE Alu 0 147 108 6 1766 213 152 0 0 chr4 154869676 154869709 -760411 - PB1D9 SINE Alu -86 34 2 6 1766 32 43 0 0 chr4 154869757 154869803 -760317 + AT_rich Low_complexity Low_complexity 1 46 0 6 1766 1086 56 35 7 chr4 154869887 154870031 -760089 + B1_Mus1 SINE Alu 1 148 0 6 1766 508 267 43 0 chr4 154870058 154870174 -759946 + ID_B1 SINE B4 91 211 -13 6 1766 518 165 40 40 chr4 154870720 154870821 -759299 - B1_Mus1 SINE Alu -15 133 33 6 1766 258 178 0 0 chr4 154870820 154870865 -759255 - B1_Mur3 SINE Alu -39 110 66 6 1766 186 71 0 0 chr4 154870880 154870908 -759212 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 6 1766 1223 41 7 0 chr4 154870908 154871053 -759067 - B1_Mm SINE Alu 0 147 2 6 1766 1415 69 0 0 chr4 154871063 154871236 -758884 - B2_Mm1t SINE B2 -19 174 2 6 1766 587 182 35 52 chr4 154871238 154871354 -758766 - PB1D9 SINE Alu 0 120 7 6 1766 348 222 223 100 chr4 154871354 154871368 -758752 - ID_B1 SINE B4 -1 223 78 6 1766 1279 103 54 0 chr4 154871427 154871611 -758509 + B2_Mm2 SINE B2 1 194 -1 6 1766 528 15 0 0 chr4 154871640 154871707 -758413 + L1_Mus1 LINE L1 6499 6565 -2 6 1766 1465 49 27 0 chr4 154871819 154871843 -758277 - B2_Mm1a SINE B2 -3 190 162 6 1766 243 0 0 0 chr4 154871843 154871870 -758250 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1766 1465 49 27 0 chr4 154871870 154872029 -758091 - B2_Mm1a SINE B2 -32 161 3 6 1766 267 276 35 4 chr4 154872490 154872572 -757548 + L2a LINE L2 3276 3413 -13 6 1766 322 299 52 15 chr4 154873167 154873303 -756817 + Charlie1a DNA MER1_type 10 150 -1305 6 1766 311 326 12 0 chr4 154873346 154873432 -756688 + B4A SINE B4 66 152 -140 7 1766 598 215 25 0 chr4 154873370 154873491 -756629 + B1_Mm SINE Alu 5 128 -19 7 1766 1294 70 6 12 chr4 154873500 154873673 -756447 + B2_Mm1t SINE B2 3 174 -19 7 1766 23 33 0 0 chr4 154873843 154873873 -756247 + AT_rich Low_complexity Low_complexity 1 30 0 7 1766 589 192 289 0 chr4 154873883 154874039 -756081 + B3 SINE B2 11 211 -5 7 1766 842 155 48 27 chr4 154874050 154874196 -755924 - B1_Mur4 SINE Alu 0 150 2 7 1766 25 51 0 0 chr4 154874204 154874243 -755877 + AT_rich Low_complexity Low_complexity 1 39 0 7 1766 182 128 43 0 chr4 154874295 154874342 -755778 + CT-rich Low_complexity Low_complexity 2 50 0 7 1766 485 85 16 13 chr4 154874355 154874433 -755687 - B1_Mus2 SINE Alu -9 138 33 7 1766 1070 142 0 33 chr4 154874442 154874624 -755496 - B2_Mm2 SINE B2 -19 176 1 7 1766 1165 55 7 27 chr4 154874644 154874793 -755327 + B1_Mus1 SINE Alu 3 148 0 7 1766 240 242 0 83 chr4 154874904 154874976 -755144 - ID4 SINE ID -16 67 2 7 1766 296 234 42 28 chr4 154875587 154875700 -754420 - B1_Mur3 SINE Alu 0 149 36 7 1766 200 170 37 19 chr4 154875726 154875780 -754340 + CT-rich Low_complexity Low_complexity 3 57 0 7 1766 393 258 143 84 chr4 154875780 154875814 -754306 - B3 SINE B2 0 216 182 7 1766 1142 98 0 0 chr4 154875814 154875957 -754163 - B1_Mus1 SINE Alu -5 143 1 7 1766 603 258 165 27 chr4 154875957 154875972 -754148 - B3A SINE B2 -6 192 169 7 1766 315 0 0 0 chr4 154875972 154876007 -754113 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1766 603 258 169 18 chr4 154876007 154876159 -753961 - B3A SINE B2 -19 179 2 7 1766 223 253 64 128 chr4 154876167 154876276 -753844 - PB1D10 SINE Alu -7 110 9 7 1766 249 33 0 0 chr4 154876336 154876366 -753754 + (TCC)n Simple_repeat Simple_repeat 3 32 0 7 1766 1237 28 14 0 chr4 154876871 154877016 -753104 - B1_Mus2 SINE Alu 0 147 1 7 1766 359 269 115 0 chr4 154877111 154877215 -752905 + RSINE1 SINE B4 12 127 -38 7 1766 186 133 0 0 chr4 154877907 154877937 -752183 + (TTCCC)n Simple_repeat Simple_repeat 5 34 0 7 1766 225 207 266 18 chr4 154877942 154877965 -752155 - B4A SINE B4 -46 246 106 7 1766 433 148 78 22 chr4 154877965 154878055 -752065 - PB1D9 SINE Alu -5 115 21 7 1766 769 210 7 0 chr4 154878193 154878331 -751789 + B1_Mur2 SINE Alu 3 141 -8 7 1766 707 278 109 49 chr4 154878458 154878806 -751314 - MLT1C LTR MaLR -52 415 47 7 1766 564 183 240 8 chr4 154879021 154879142 -750978 + B1_Mur1 SINE Alu 1 149 0 7 1766 357 44 18 15 chr4 154879706 154879771 -750349 - B1_Mus2 SINE Alu 0 147 87 7 1766 376 261 154 34 chr4 154879824 154879997 -750123 - ID_B1 SINE B4 -7 217 15 7 1766 225 333 21 11 chr4 154880022 154880042 -750078 - RSINE1 SINE B4 -63 102 8 7 1766 448 162 14 0 chr4 154880042 154880116 -750004 - B3 SINE B2 -135 81 7 7 1766 222 122 0 0 chr4 154880435 154880466 -749654 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1766 1153 78 0 0 chr4 154880466 154880608 -749512 - B1_Mus2 SINE Alu -5 142 1 7 1766 222 122 0 0 chr4 154880608 154880617 -749503 + (T)n Simple_repeat Simple_repeat 1 9 0 7 1766 186 43 0 0 chr4 154880661 154880684 -749436 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 1766 355 186 57 0 chr4 154880897 154880967 -749153 + PB1D10 SINE Alu 43 116 -1 7 1766 250 315 0 52 chr4 154880967 154880994 -749126 + ID_B1 SINE B4 124 215 -9 7 1766 393 22 0 0 chr4 154881114 154881160 -748960 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1766 234 0 0 0 chr4 154881381 154881407 -748713 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1766 1211 56 0 0 chr4 154881410 154881552 -748568 - B1_Mus1 SINE Alu -6 142 1 7 1766 649 192 0 70 chr4 154881648 154881777 -748343 - PB1D9 SINE Alu 0 120 1 7 1766 25 0 0 0 chr4 154881778 154881803 -748317 + AT_rich Low_complexity Low_complexity 1 25 0 7 1766 1129 65 0 0 chr4 154881803 154881942 -748178 + B1_Mus1 SINE Alu 1 139 -9 7 1766 243 0 0 0 chr4 154881942 154881969 -748151 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1766 1167 93 29 11 chr4 154881969 154882143 -747977 - B2_Mm2 SINE B2 -16 179 3 7 1766 281 197 35 68 chr4 154882695 154882804 -747316 - B1_Mur1 SINE Alu -1 148 10 7 1766 777 225 102 0 chr4 154883240 154883427 -746693 - B3 SINE B2 -10 206 1 7 1766 615 215 8 15 chr4 154884122 154884254 -745866 - B1_Mur3 SINE Alu 0 149 19 7 1766 723 150 104 8 chr4 154884256 154884390 -745730 + B1_Mus1 SINE Alu 2 148 0 7 1766 572 228 23 38 chr4 154885861 154885993 -744127 + RSINE1 SINE B4 12 141 -24 7 1766 305 89 0 43 chr4 154886088 154886135 -743985 + B1_Mm SINE Alu 71 115 -32 7 1766 207 0 0 0 chr4 154886161 154886184 -743936 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1766 662 172 90 38 chr4 154886544 154886677 -743443 - B1_Mur3 SINE Alu -9 140 1 7 1766 23 33 0 0 chr4 154886712 154886742 -743378 + AT_rich Low_complexity Low_complexity 1 30 0 7 1766 29 28 0 0 chr4 154887029 154887065 -743055 + AT_rich Low_complexity Low_complexity 1 36 0 7 1766 833 182 7 7 chr4 154887948 154888086 -742034 - B1_Mus2 SINE Alu -9 138 1 7 1766 1648 32 0 0 chr4 154888095 154888282 -741838 - B2_Mm1a SINE B2 -4 189 3 7 1766 535 188 237 8 chr4 154888433 154888551 -741569 + B1_Mur1 SINE Alu 5 149 0 7 1766 319 156 311 23 chr4 154888587 154888674 -741446 + PB1D9 SINE Alu 38 148 0 7 1766 752 213 105 36 chr4 154888844 154889063 -741057 - L1MB5 LINE L1 -9 6165 5932 7 1766 462 276 34 27 chr4 154889091 154889240 -740880 - RSINE1 SINE B4 -14 151 2 7 1766 240 163 0 0 chr4 154889288 154889331 -740789 + CT-rich Low_complexity Low_complexity 2 44 0 7 1766 248 250 264 0 chr4 154889343 154889415 -740705 - B1_Mus2 SINE Alu -53 94 4 7 1766 516 204 53 9 chr4 154889455 154889569 -740551 - PB1D9 SINE Alu -1 119 1 7 1766 299 281 42 107 chr4 154889791 154889865 -740255 - B2_Mm2 SINE B2 -9 207 96 7 1766 523 165 0 0 chr4 154889865 154889956 -740164 - PB1D9 SINE Alu -17 103 13 7 1766 299 281 42 107 chr4 154889956 154890016 -740104 - B2_Mm2 SINE B2 -9 95 2 7 1766 360 277 19 38 chr4 154890033 154890138 -739982 - B3 SINE B2 0 216 114 7 1766 352 269 11 15 chr4 154890144 154890236 -739884 - PB1D7 SINE Alu -19 98 10 7 1766 189 121 0 0 chr4 154890364 154890397 -739723 + (TATG)n Simple_repeat Simple_repeat 2 34 0 7 1766 676 258 36 138 chr4 154890533 154890780 -739340 - B4A SINE B4 -61 231 10 7 1766 186 167 0 0 chr4 154890939 154890975 -739145 + GA-rich Low_complexity Low_complexity 2 37 0 7 1766 238 304 23 23 chr4 154891034 154891162 -738958 + RLTR15 LTR ERVK 216 343 -16 7 1766 1103 108 5 36 chr4 154891286 154891478 -738642 - B2_Mm1t SINE B2 -1 192 7 7 1766 222 37 0 0 chr4 154891483 154891510 -738610 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1766 1031 105 67 45 chr4 154891510 154891689 -738431 - B2_Mm2 SINE B2 -11 184 2 7 1766 868 50 0 32 chr4 154891741 154891865 -738255 - L1_Mus2 LINE L1 0 6566 6447 7 1766 216 82 18 109 chr4 154891871 154891926 -738194 - B1_Mus2 SINE Alu -1 146 97 7 1766 222 136 0 0 chr4 154892268 154892312 -737808 + (T)n Simple_repeat Simple_repeat 1 44 0 7 1766 1420 65 27 0 chr4 154892326 154892512 -737608 - B2_Mm1a SINE B2 0 193 3 7 1766 1174 48 7 0 chr4 154893149 154893295 -736825 + B1_Mm SINE Alu 1 147 0 7 1766 297 273 40 20 chr4 154893817 154893839 -736281 + B1F SINE Alu 47 116 -33 7 1766 348 225 14 0 chr4 154893839 154893910 -736210 + ID_B1 SINE B4 146 217 -7 7 1766 386 272 0 72 chr4 154894328 154894390 -735730 - PB1D10 SINE Alu -9 108 51 7 1766 219 36 0 0 chr4 154894390 154894418 -735702 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1766 1544 38 0 21 chr4 154894418 154894604 -735516 - B2_Mm1a SINE B2 -11 182 1 7 1766 386 272 0 72 chr4 154894604 154894651 -735469 - PB1D10 SINE Alu -67 50 7 7 1766 304 156 0 18 chr4 154894772 154894876 -735244 - B2_Mm2 SINE B2 -9 186 47 7 1766 1197 103 22 22 chr4 154894889 154895068 -735052 - B2_Mm1t SINE B2 -14 179 1 7 1766 649 239 0 7 chr4 154895260 154895399 -734721 - B1_Mur1 SINE Alu -10 139 2 7 1766 697 208 0 51 chr4 154895455 154895612 -734508 + B1_Mur4 SINE Alu 1 149 -1 7 1766 21 0 0 0 chr4 154895983 154896004 -734116 + AT_rich Low_complexity Low_complexity 1 21 0 7 1766 252 365 0 0 chr4 154896906 154896980 -733140 + RSINE1 SINE B4 84 157 -8 7 1766 504 115 0 25 chr4 154897051 154897131 -732989 + B1_Mm SINE Alu 70 147 0 7 1766 276 261 34 67 chr4 154897169 154897288 -732832 - RSINE1 SINE B4 -35 130 16 7 1766 715 153 179 30 chr4 154898119 154898269 -731851 + B2_Mm2 SINE B2 3 178 -17 7 1766 243 0 0 0 chr4 154898269 154898296 -731824 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 7 1766 715 153 179 30 chr4 154898296 154898313 -731807 + B2_Mm2 SINE B2 179 195 0 7 1766 401 204 75 0 chr4 154898681 154898774 -731346 + B1_Mur3 SINE Alu 37 136 -13 7 1766 308 368 21 62 chr4 154898847 154898992 -731128 - B1F2 SINE Alu -8 139 1 7 1766 272 169 0 27 chr4 154899054 154899127 -730993 + (TATG)n Simple_repeat Simple_repeat 1 71 0 7 1766 1292 151 27 5 chr4 154899190 154899409 -730711 + URR1B DNA MER1_type 1 224 -1 7 1766 515 233 26 8 chr4 154899530 154899647 -730473 + B3 SINE B2 4 122 -94 7 1766 357 260 12 23 chr4 154899819 154899932 -730188 + B1F SINE Alu 3 113 -37 8 1766 321 267 81 32 chr4 154900005 154900129 -729991 - B1_Mur1 SINE Alu -8 141 12 8 1766 496 217 100 0 chr4 154900173 154900293 -729827 - ID_B1 SINE B4 -1 223 92 8 1766 663 244 93 16 chr4 154900390 154900573 -729547 - ID_B1 SINE B4 -8 216 20 8 1766 1346 114 10 0 chr4 154900935 154901128 -728992 - B2_Mm2 SINE B2 0 195 1 8 1766 252 0 0 0 chr4 154901188 154901216 -728904 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 8 1766 354 182 91 0 chr4 154902226 154902303 -727817 - B1_Mur2 SINE Alu 0 149 66 8 1766 194 0 39 0 chr4 154902333 154902359 -727761 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1766 249 296 37 0 chr4 154902857 154902938 -727182 - PB1 SINE Alu -17 110 27 8 1766 221 224 148 34 chr4 154902999 154903087 -727033 + PB1D9 SINE Alu 1 98 -22 8 1766 361 248 89 0 chr4 154903018 154903119 -727001 + ID_B1 SINE B4 107 216 -8 8 1766 694 277 11 5 chr4 154903129 154903314 -726806 + B3A SINE B2 3 188 -10 8 1766 383 147 68 37 chr4 154903476 154903576 -726544 - B1_Mur2 SINE Alu -8 141 1 8 1766 552 196 32 22 chr4 154903594 154903728 -726392 - B1_Mur4 SINE Alu -3 147 17 8 1766 1206 113 0 26 chr4 154903982 154904172 -725948 - B2_Mm2 SINE B2 -9 186 2 8 1766 450 237 21 0 chr4 154904285 154904382 -725738 + ID_B1 SINE B4 103 201 -23 8 1766 645 156 92 49 chr4 154904810 154904952 -725168 - B1_Mur2 SINE Alu 0 149 2 8 1766 276 304 0 55 chr4 154905019 154905092 -725028 + B3A SINE B2 94 162 -36 8 1766 224 276 0 17 chr4 154905285 154905344 -724776 + PB1D7 SINE Alu 55 112 -8 8 1766 741 59 0 0 chr4 154905358 154905460 -724660 + B1_Mm SINE Alu 3 104 -43 8 1766 664 223 43 7 chr4 154905462 154905602 -724518 + B1_Mur2 SINE Alu 5 149 0 8 1766 446 250 25 103 chr4 154905615 154905778 -724342 + RSINE1 SINE B4 11 159 -6 8 1766 722 164 15 30 chr4 154905874 154906006 -724114 - B1_Mur4 SINE Alu -15 135 6 8 1766 368 215 38 0 chr4 154906083 154906162 -723958 + ID_B1 SINE B4 110 191 -33 8 1766 312 242 77 0 chr4 154906162 154906174 -723946 + B1F SINE Alu 29 126 -23 8 1766 1574 47 5 5 chr4 154906589 154906782 -723338 - B2_Mm2 SINE B2 -1 194 2 8 1766 527 171 28 0 chr4 154906782 154906889 -723231 + PB1D9 SINE Alu 5 120 0 8 1766 225 0 0 0 chr4 154906890 154906915 -723205 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 8 1766 227 152 22 0 chr4 154906915 154906961 -723159 + GA-rich Low_complexity Low_complexity 2 48 0 8 1766 486 246 69 8 chr4 154906970 154907101 -723019 + B1_Mur1 SINE Alu 1 139 -10 8 1766 304 267 116 0 chr4 154908088 154908174 -721946 + RSINE1 SINE B4 30 125 -40 8 1766 694 281 223 6 chr4 154908240 154908577 -721543 - MTD LTR MaLR -9 410 1 8 1766 1192 29 0 0 chr4 154909005 154909142 -720978 + B1_Mus1 SINE Alu 1 137 -11 8 1766 546 216 33 2 chr4 154909196 154909348 -720772 + B3 SINE B2 4 166 -29 8 1766 684 212 38 8 chr4 154909663 154909796 -720324 + B1_Mur1 SINE Alu 5 141 -8 8 1766 273 304 13 0 chr4 154910631 154910710 -719410 - ID4 SINE ID -2 81 2 8 1766 21 0 0 0 chr4 154910889 154910910 -719210 + AT_rich Low_complexity Low_complexity 1 21 0 8 1766 239 234 100 38 chr4 154910913 154910930 -719190 + PB1D10 SINE Alu 32 112 -1 8 1766 319 186 0 0 chr4 154910930 154910989 -719131 + ID_B1 SINE B4 164 222 -2 8 1766 1694 26 0 0 chr4 154910996 154911188 -718932 + B2_Mm1t SINE B2 1 192 -1 8 1766 596 230 14 56 chr4 154911370 154911513 -718607 + B1_Mur1 SINE Alu 1 137 -10 8 1766 265 349 72 28 chr4 154911489 154911669 -718451 + B4 SINE B4 42 229 -63 8 1766 252 0 0 0 chr4 154911717 154911745 -718375 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1766 504 212 43 26 chr4 154911891 154912007 -718113 - B1_Mus2 SINE Alu -6 141 24 8 1766 762 212 0 20 chr4 154913010 154913159 -716961 + B1_Mur2 SINE Alu 2 147 -2 8 1766 242 116 23 0 chr4 154913772 154913815 -716305 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 8 1766 978 246 201 3 chr4 154913887 154914215 -715905 - MTD LTR MaLR 0 419 27 8 1766 389 272 0 0 chr4 154915050 154915131 -714989 + ID4 SINE ID 2 82 -1 8 1766 521 342 15 63 chr4 154915270 154915476 -714644 + ID_B1 SINE B4 24 219 -5 8 1766 228 81 0 0 chr4 154915484 154915502 -714618 + (CAAA)n Simple_repeat Simple_repeat 4 21 0 8 1766 1267 100 16 21 chr4 154915502 154915696 -714424 + B2_Mm1a SINE B2 1 193 0 8 1766 228 81 0 0 chr4 154915696 154915714 -714406 + (CAAA)n Simple_repeat Simple_repeat 2 19 0 8 1766 229 287 136 24 chr4 154915738 154915863 -714257 + B1_Mur3 SINE Alu 5 143 -6 8 1766 421 316 67 22 chr4 154915752 154915930 -714190 + B4A SINE B4 106 291 -1 8 1766 767 160 34 27 chr4 154915950 154916098 -714022 + B1_Mur3 SINE Alu 1 149 0 8 1766 310 296 78 49 chr4 154916105 154916247 -713873 + B3 SINE B2 2 147 -69 8 1766 256 208 57 0 chr4 154916499 154916552 -713568 - B1F SINE Alu -93 56 1 8 1766 220 258 46 46 chr4 154916552 154916564 -713556 - B4A SINE B4 -151 141 77 8 1766 615 48 0 0 chr4 154916897 154916980 -713140 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 8 1766 502 204 58 0 chr4 154916980 154917083 -713037 - PB1D9 SINE Alu -11 109 1 8 1766 1023 80 0 21 chr4 154918077 154918217 -711903 + B1_Mm SINE Alu 2 138 -9 8 1766 705 245 151 0 chr4 154918300 154918492 -711628 + ID_B1 SINE B4 1 221 -3 8 1766 257 276 0 125 chr4 154918649 154918769 -711351 + B4A SINE B4 188 292 0 8 1766 1509 43 22 0 chr4 154918831 154919015 -711105 - B2_Mm2 SINE B2 -7 188 1 8 1766 781 237 52 23 chr4 154919039 154919212 -710908 + B3 SINE B2 6 183 -33 8 1766 1770 156 63 3 chr4 154919216 154919551 -710569 - ORR1B2 LTR MaLR -12 355 1 8 1766 1428 65 11 0 chr4 154919583 154919768 -710352 + B2_Mm1a SINE B2 1 187 -6 8 1766 688 273 43 63 chr4 154920185 154920392 -709728 + ID_B1 SINE B4 1 203 -21 8 1766 696 115 0 0 chr4 154920489 154920611 -709509 + (TCTA)n Simple_repeat Simple_repeat 1 122 0 8 1766 621 67 111 0 chr4 154920611 154920701 -709419 - B1_Mus1 SINE Alu -18 130 31 8 1766 323 229 99 54 chr4 154920752 154920863 -709257 - B1_Mm SINE Alu -24 123 8 8 1766 230 250 98 87 chr4 154920796 154920888 -709232 - MT2B LTR ERVL -361 240 148 8 1766 258 327 35 17 chr4 154920926 154921041 -709079 - MER47B DNA MER2_type -229 189 73 8 1766 888 191 0 0 chr4 154921121 154921299 -708821 + CT-rich Low_complexity Low_complexity 1 178 0 8 1766 414 57 0 0 chr4 154921299 154921352 -708768 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 8 1766 277 263 30 40 chr4 154921352 154921451 -708669 - PB1D7 SINE Alu -20 100 3 8 1766 315 241 23 57 chr4 154921366 154921454 -708666 - B4A SINE B4 -123 169 85 8 1766 247 299 55 0 chr4 154921619 154921746 -708374 - Tigger7 DNA MER2_type -76 2415 2282 8 1766 22 0 0 30 chr4 154921781 154921796 -708324 + AT_rich Low_complexity Low_complexity 1 15 0 8 1766 1493 63 5 0 chr4 154921796 154921986 -708134 - B2_Mm1a SINE B2 -1 192 2 8 1766 22 0 0 30 chr4 154921986 154922003 -708117 + AT_rich Low_complexity Low_complexity 1 17 0 8 1766 180 0 0 0 chr4 154922101 154922121 -707999 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1766 620 155 39 0 chr4 154922158 154922261 -707859 - B1_Mur3 SINE Alu -2 147 41 8 1766 328 292 129 26 chr4 154922313 154922429 -707691 - RSINE1 SINE B4 -34 131 4 8 1766 333 0 0 0 chr4 154922440 154922477 -707643 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1766 513 261 17 9 chr4 154922482 154922598 -707522 - RSINE1 SINE B4 -46 119 3 8 1766 237 158 0 0 chr4 154922598 154922636 -707484 - L1M4b LINE L1 -5004 2330 2293 8 1766 252 103 0 49 chr4 154922602 154922643 -707477 - L1MDa LINE L1 -4703 1930 1892 8 1766 883 248 20 15 chr4 154922673 154922874 -707246 - B3 SINE B2 -11 205 4 8 1766 234 267 135 15 chr4 154922908 154923041 -707079 - L1M4b LINE L1 -4909 2193 2045 8 1766 28 29 0 0 chr4 154923941 154923976 -706144 + AT_rich Low_complexity Low_complexity 1 35 0 8 1766 692 203 21 7 chr4 154924017 154924161 -705959 + B1_Mus2 SINE Alu 1 146 -1 8 1766 1063 46 69 206 chr4 154924864 154925082 -705038 - B2_Mm1t SINE B2 -5 188 1 8 1766 1244 27 0 20 chr4 154926441 154926591 -703529 + B1_Mus2 SINE Alu 1 147 0 8 1766 189 0 0 0 chr4 154926591 154926612 -703508 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 8 1767 1398 198 75 40 chr4 154927717 154928065 -702055 - ORR1D1 LTR MaLR -4 370 11 8 1767 337 305 48 0 chr4 154929612 154929717 -700403 - B1F2 SINE Alu -30 119 10 8 1767 258 204 250 0 chr4 154930136 154930224 -699896 + PB1D9 SINE Alu 10 119 -1 8 1767 278 227 22 225 chr4 154930495 154930525 -699595 - B2_Mm2 SINE B2 -1 194 170 8 1767 735 154 38 8 chr4 154930525 154930656 -699464 + B1_Mus1 SINE Alu 1 135 -13 8 1767 572 211 29 34 chr4 154930656 154930833 -699287 - B3 SINE B2 -6 192 20 8 1767 453 142 40 152 chr4 154930850 154930975 -699145 - PB1D9 SINE Alu -1 119 9 8 1767 242 253 0 174 chr4 154930873 154930988 -699132 - ID_B1 SINE B4 -52 172 78 9 1767 228 105 52 17 chr4 154931814 154931872 -698248 + T-rich Low_complexity Low_complexity 1 60 0 9 1767 258 164 0 0 chr4 154932165 154932220 -697900 + T-rich Low_complexity Low_complexity 1 55 0 9 1767 587 237 53 0 chr4 154933491 154933622 -696498 + B1_Mur2 SINE Alu 2 139 -10 9 1767 1136 75 0 13 chr4 154934010 154934159 -695961 - B1_Mus2 SINE Alu 0 147 1 9 1767 357 148 99 33 chr4 154936833 154936924 -693196 - PB1D9 SINE Alu -1 119 23 9 1767 747 0 0 0 chr4 154937243 154937326 -692794 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 9 1767 201 74 0 0 chr4 154937394 154937421 -692699 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1767 286 288 5 73 chr4 154937421 154937612 -692508 + CT-rich Low_complexity Low_complexity 2 179 0 9 1767 271 327 7 26 chr4 154937642 154937796 -692324 + C-rich Low_complexity Low_complexity 2 152 0 9 1767 459 328 37 0 chr4 154939383 154939517 -690603 - RSINE1 SINE B4 -24 141 3 9 1767 615 283 43 78 chr4 154939517 154939747 -690373 - ID_B1 SINE B4 0 224 3 9 1767 204 125 0 0 chr4 154939760 154939792 -690328 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 9 1767 665 78 126 34 chr4 154939811 154939930 -690190 - B1_Mus2 SINE Alu -9 138 9 9 1767 1315 46 121 0 chr4 154939952 154940126 -689994 - B2_Mm2 SINE B2 0 195 1 9 1767 700 214 40 30 chr4 154940141 154940339 -689781 - B3 SINE B2 0 216 17 9 1767 518 197 92 30 chr4 154941864 154941995 -688125 - B1_Mus1 SINE Alu -9 139 1 9 1767 331 221 0 13 chr4 154941999 154942077 -688043 - B1_Mur4 SINE Alu 0 150 74 9 1767 584 161 198 16 chr4 154942111 154942237 -687883 - B1_Mur4 SINE Alu -1 149 1 9 1767 578 208 38 8 chr4 154942248 154942379 -687741 - B1_Mur1 SINE Alu -8 141 7 9 1767 436 234 110 58 chr4 154942416 154942570 -687550 + B3A SINE B2 1 162 -36 9 1767 1347 75 32 11 chr4 154942598 154942788 -687332 - B2_Mm2 SINE B2 0 195 2 9 1767 219 316 130 9 chr4 154943359 154943474 -686646 - RSINE1 SINE B4 0 165 37 9 1767 596 152 21 4 chr4 154943671 154943778 -686342 + PB1D9 SINE Alu 4 108 -12 9 1767 221 0 35 0 chr4 154943779 154943808 -686312 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1767 1053 36 43 0 chr4 154943808 154943947 -686173 - B2_Mm2 SINE B2 -49 146 2 9 1767 305 308 36 45 chr4 154943988 154944100 -686020 + PB1D10 SINE Alu 5 115 -2 9 1767 364 222 73 18 chr4 154944100 154944210 -685910 + PB1D9 SINE Alu 5 120 0 9 1767 252 262 24 59 chr4 154944234 154944319 -685801 + ID2 SINE ID 2 83 0 9 1767 1161 62 7 0 chr4 154944500 154944644 -685476 - B1_Mus2 SINE Alu 0 147 3 9 1767 254 206 104 52 chr4 154944789 154944866 -685254 - ID4_ SINE ID 0 83 3 9 1767 454 239 87 17 chr4 154944867 154944982 -685138 - PB1 SINE Alu -2 125 3 9 1767 1464 37 25 31 chr4 154945122 154945318 -684802 + B2_Mm2 SINE B2 1 195 0 9 1767 194 250 23 0 chr4 154945322 154945366 -684754 - MER5B DNA MER1_type -130 48 4 9 1767 446 176 66 0 chr4 154945424 154945515 -684605 - MLT1B LTR MaLR -1 389 293 9 1767 362 119 0 0 chr4 154945627 154945686 -684434 + B1_Mur3 SINE Alu 76 134 -15 9 1767 239 241 101 22 chr4 154945698 154945787 -684333 - MLT1B LTR MaLR -227 138 43 9 1767 339 210 69 20 chr4 154945810 154945912 -684208 + PB1D10 SINE Alu 5 111 -6 9 1767 865 244 222 75 chr4 154945948 154946484 -683636 - RLTR18 LTR ERVK -1 615 1 9 1767 376 214 112 84 chr4 154946585 154946728 -683392 - PB1D9 SINE Alu 0 147 1 9 1767 1340 74 40 6 chr4 154946818 154946994 -683126 + B2_Mm2 SINE B2 2 183 -12 9 1767 27 0 0 0 chr4 154946994 154947021 -683099 + GC_rich Low_complexity Low_complexity 1 27 0 9 1767 189 0 0 0 chr4 154947145 154947166 -682954 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 1767 450 0 0 0 chr4 154947166 154947215 -682905 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1767 307 320 121 20 chr4 154947222 154947321 -682799 - RSINE1 SINE B4 -48 117 9 9 1767 270 0 0 0 chr4 154947327 154947357 -682763 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1767 617 208 8 0 chr4 154947421 154947546 -682574 - B3 SINE B2 -89 127 2 9 1767 398 215 90 36 chr4 154947680 154947791 -682329 - PB1D10 SINE Alu 0 117 1 9 1767 217 277 91 50 chr4 154947705 154947804 -682316 - B4 SINE B4 -120 172 70 9 1767 811 223 19 25 chr4 154947817 154947978 -682142 + B3A SINE B2 1 160 -38 9 1767 307 291 0 137 chr4 154947978 154948017 -682103 + ID_B1 SINE B4 60 210 -14 9 1767 479 142 66 169 chr4 154948017 154948153 -681967 + B1_Mus1 SINE Alu 13 134 -14 9 1767 536 267 122 62 chr4 154948269 154948589 -681531 - RMER10A LTR ERVL -16 426 88 9 1767 283 158 105 0 chr4 154948590 154948647 -681473 + B3 SINE B2 148 210 -6 9 1767 189 125 0 0 chr4 154948647 154948664 -681456 + (T)n Simple_repeat Simple_repeat 1 17 0 9 1767 1072 72 58 0 chr4 154948664 154948803 -681317 - B1_Mus2 SINE Alu 0 147 1 9 1767 189 125 0 0 chr4 154948803 154948825 -681295 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1767 304 307 191 7 chr4 154948861 154949002 -681118 + ID_B1 SINE B4 54 220 -4 9 1767 886 231 163 39 chr4 154949031 154949373 -680747 + MTD LTR MaLR 1 407 -12 9 1767 266 239 55 27 chr4 154949470 154949543 -680577 - PB1D9 SINE Alu -1 119 45 9 1767 216 97 0 0 chr4 154949547 154949578 -680542 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 9 1767 670 160 0 9 chr4 154949578 154949685 -680435 - B1_Mus2 SINE Alu -6 141 36 9 1767 332 310 53 53 chr4 154949685 154949728 -680392 - ID_B1 SINE B4 -6 218 69 9 1767 245 260 152 9 chr4 154949720 154949825 -680295 - PB1D9 SINE Alu 0 120 1 9 1767 203 200 36 18 chr4 154950036 154950092 -680028 + T-rich Low_complexity Low_complexity 4 60 0 9 1767 1065 90 14 0 chr4 154950600 154950745 -679375 - B1_Mur4 SINE Alu -3 147 1 9 1767 359 228 105 38 chr4 154952408 154952513 -677607 + PB1D7 SINE Alu 3 114 -6 9 1767 366 226 191 0 chr4 154953675 154953790 -676330 + B1F1 SINE Alu 13 149 0 9 1767 363 105 0 0 chr4 154953936 154953993 -676127 + (TATG)n Simple_repeat Simple_repeat 3 59 0 9 1767 349 253 0 22 chr4 154953999 154954088 -676032 - B2_Mm2 SINE B2 -25 170 84 9 1767 1017 169 32 5 chr4 154954481 154954666 -675454 - URR1A DNA MER1_type 0 226 37 9 1767 204 40 0 0 chr4 154954894 154954919 -675201 + (CTG)n Simple_repeat Simple_repeat 2 26 0 9 1767 214 246 84 161 chr4 154955284 154955312 -674808 - B2_Mm2 SINE B2 0 195 170 9 1767 1599 34 0 0 chr4 154955312 154955491 -674629 + B2_Mm1t SINE B2 1 179 -14 9 1767 293 232 39 139 chr4 154955491 154955617 -674503 - B3A SINE B2 -26 169 53 9 1767 525 207 16 49 chr4 154955664 154955786 -674334 - B1_Mus1 SINE Alu 0 148 31 9 1767 261 224 0 0 chr4 154955781 154955830 -674290 - B2_Mm2 SINE B2 -146 49 1 9 1767 1041 31 39 0 chr4 154956080 154956207 -673913 + B1_Mus1 SINE Alu 5 136 -12 9 1767 197 33 33 0 chr4 154956207 154956237 -673883 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1767 664 262 7 21 chr4 154957460 154957604 -672516 + B1_Mur1 SINE Alu 2 143 -6 9 1767 43 56 0 0 chr4 154957604 154957675 -672445 + AT_rich Low_complexity Low_complexity 1 71 0 9 1767 251 306 115 82 chr4 154958657 154958958 -671162 - MLT1A1 LTR MaLR -3 405 75 9 1767 572 261 54 6 chr4 154959702 154959815 -670305 + URR1B DNA MER1_type 52 172 -53 9 1767 1249 40 14 0 chr4 154959815 154959963 -670157 + B1_Mur4 SINE Alu 1 150 0 9 1767 572 261 54 6 chr4 154959963 154960015 -670105 + URR1B DNA MER1_type 173 225 0 9 1767 823 204 73 19 chr4 154961014 154961219 -668901 - B3 SINE B2 0 216 1 9 1767 233 250 54 0 chr4 154966476 154966532 -663588 + B4A SINE B4 83 141 -151 9 1767 488 198 0 112 chr4 154966578 154966703 -663417 + B1_Mm SINE Alu 5 115 -32 9 1767 3644 214 124 36 chr4 154966726 154966878 -663242 - RMER12 LTR ERVK -156 1166 1000 9 1767 1414 104 5 0 chr4 154966878 154967071 -663049 + B2_Mm2 SINE B2 2 195 0 9 1767 3644 214 124 36 chr4 154967071 154967098 -663022 - RMER12 LTR ERVK -323 999 971 9 1767 288 53 0 0 chr4 154967098 154967136 -662984 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1767 3644 214 124 36 chr4 154967136 154967289 -662831 - RMER12 LTR ERVK -352 970 770 9 1767 708 123 0 0 chr4 154967289 154967403 -662717 + (TA)n Simple_repeat Simple_repeat 2 115 0 9 1767 3644 214 124 36 chr4 154967403 154967738 -662382 - RMER12 LTR ERVK -553 769 434 9 1767 891 88 72 0 chr4 154967738 154967863 -662257 - B1_Mus2 SINE Alu -12 135 2 9 1767 3644 214 124 36 chr4 154967863 154968264 -661856 - RMER12 LTR ERVK -889 433 1 9 1767 360 0 0 0 chr4 154968510 154968550 -661570 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1767 1041 99 42 0 chr4 154968646 154968788 -661332 + B1_Mus1 SINE Alu 1 148 0 9 1767 994 118 180 0 chr4 154968986 154969147 -660973 - B2_Mm2 SINE B2 -5 190 1 9 1767 912 158 250 24 chr4 154969147 154969355 -660765 - RLTR33 LTR ERVK -242 436 182 9 1767 791 129 197 0 chr4 154969437 154969584 -660536 + B2_Mm2 SINE B2 1 176 -19 9 1767 270 0 0 0 chr4 154969614 154969644 -660476 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1767 234 0 0 0 chr4 154969645 154969671 -660449 + (TTG)n Simple_repeat Simple_repeat 1 26 0 9 1767 343 236 111 10 chr4 154969739 154969837 -660283 + B1_Mur2 SINE Alu 18 148 -1 9 1767 468 51 0 0 chr4 154969960 154970019 -660101 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1767 531 284 65 37 chr4 154971344 154971589 -658531 + RLTR15 LTR ERVK 45 296 -63 9 1767 342 228 47 71 chr4 154971642 154971655 -658465 + B4 SINE B4 70 80 -212 9 1767 487 97 0 77 chr4 154971655 154971733 -658387 + B1_Mus2 SINE Alu 2 73 -74 9 1767 417 287 7 44 chr4 154971713 154971848 -658272 + ID_B1 SINE B4 95 224 0 1 1767 1019 201 208 45 chr4 154972122 154972680 -657440 + RodERV21-int LTR ERV1 299 947 -4044 1 1767 501 40 0 38 chr4 154972850 154972929 -657191 + (CCCCG)n Simple_repeat Simple_repeat 5 80 0 1 1767 274 291 13 0 chr4 154973027 154973106 -657014 + RLTR42-int LTR ERVK 1103 1182 -4340 1 1767 588 140 0 11 chr4 154973131 154973225 -656895 + B2_Mm2 SINE B2 1 93 -102 1 1767 736 234 150 31 chr4 154973343 154973603 -656517 + RMER6B LTR ERVK 171 461 0 1 1767 893 264 137 47 chr4 154973603 154973982 -656138 + RCHARR1 DNA MER1_type 84 497 -477 1 1767 1281 99 16 0 chr4 154973982 154974164 -655956 + B2_Mm1t SINE B2 2 186 -7 1 1767 893 264 137 47 chr4 154974164 154974175 -655945 + RCHARR1 DNA MER1_type 498 509 -465 1 1767 483 254 100 0 chr4 154974174 154974304 -655816 + ID_B1 SINE B4 82 224 0 1 1767 250 319 122 17 chr4 154974332 154974447 -655673 + B4 SINE B4 72 198 -94 1 1767 581 211 18 0 chr4 154974365 154974474 -655646 + B1_Mur1 SINE Alu 26 136 -13 1 1767 1169 68 7 0 chr4 154974485 154974631 -655489 - B1_Mus2 SINE Alu 0 147 1 1 1767 996 215 122 37 chr4 154974688 154975016 -655104 + RCHARR1 DNA MER1_type 483 838 -136 1 1767 449 133 0 74 chr4 154975009 154975090 -655030 - B1_Mur2 SINE Alu -2 147 73 1 1767 305 136 68 0 chr4 154975100 154975159 -654961 + RCHARR1 DNA MER1_type 825 887 -87 1 1767 454 260 9 9 chr4 154976710 154976815 -653305 - PB1D10 SINE Alu -1 116 12 1 1767 311 250 219 25 chr4 154976815 154976829 -653291 - ID_B1 SINE B4 -1 223 82 1 1767 248 156 133 0 chr4 154977426 154977471 -652649 - ID SINE ID -151 73 23 1 1767 384 243 0 146 chr4 154977723 154977819 -652301 + PB1D10 SINE Alu 1 87 -30 1 1767 1251 48 0 0 chr4 154977819 154977966 -652154 - B1_Mus2 SINE Alu 0 147 1 1 1767 384 243 0 146 chr4 154977966 154977999 -652121 + PB1D10 SINE Alu 88 111 -6 1 1767 1007 131 0 0 chr4 154978189 154978334 -651786 - B1_Mus1 SINE Alu -2 146 2 1 1767 207 88 0 0 chr4 154978539 154978573 -651547 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1767 1212 43 0 0 chr4 154978573 154978712 -651408 - B1_Mus2 SINE Alu -8 139 1 1 1767 906 191 29 39 chr4 154978975 154979182 -650938 - B3 SINE B2 -2 214 10 1 1767 864 224 52 43 chr4 154979574 154979784 -650336 - B3 SINE B2 -1 215 4 1 1767 621 0 0 0 chr4 154979795 154979864 -650256 + (TTCTC)n Simple_repeat Simple_repeat 1 69 0 1 1767 263 268 7 102 chr4 154979876 154979920 -650200 - BC1_Mm scRNA scRNA -23 129 91 1 1767 583 163 186 8 chr4 154979920 154980044 -650076 - B1_Mm SINE Alu 0 147 2 1 1767 330 268 7 102 chr4 154980044 154980136 -649984 - ID4_ SINE ID -62 90 6 1 1767 453 240 109 23 chr4 154980148 154980276 -649844 - ID_B1 SINE B4 -2 222 84 1 1767 686 159 59 29 chr4 154980305 154980441 -649679 - B1_Mus1 SINE Alu -3 145 6 1 1767 838 141 28 0 chr4 154980440 154980582 -649538 - ORR1D1 LTR MaLR -227 147 2 1 1767 1489 168 101 35 chr4 154980588 154980934 -649186 - ORR1D1-int LTR MaLR -6 1364 996 1 1767 423 0 0 0 chr4 154980941 154980988 -649132 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1767 1390 71 66 0 chr4 154981303 154981485 -648635 - B2_Mm2 SINE B2 0 195 2 1 1767 1063 208 29 19 chr4 154982087 154982293 -647827 + B3 SINE B2 6 213 -3 1 1767 2496 152 71 9 chr4 154982299 154982738 -647382 - RMER4A LTR ERVK 0 466 1 1 1767 337 250 24 24 chr4 154982757 154982839 -647281 - B3 SINE B2 -5 211 130 1 1767 216 233 32 48 chr4 154982839 154982902 -647218 - ID SINE ID -137 87 26 1 1767 1723 21 0 0 chr4 154984794 154984986 -645134 - B2_Mm1a SINE B2 0 193 2 1 1767 846 155 14 40 chr4 154985205 154985353 -644767 - B1_Mm SINE Alu -3 144 1 1 1767 846 188 14 7 chr4 154985397 154985542 -644578 + B1_Mur1 SINE Alu 3 148 -1 1 1767 660 144 17 166 chr4 154986293 154986468 -643652 - B1_Mur3 SINE Alu 0 149 1 1 1767 197 33 0 32 chr4 154986494 154986525 -643595 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1767 684 269 7 14 chr4 154986557 154986704 -643416 + RSINE1 SINE B4 20 165 0 1 1767 366 241 48 0 chr4 154987675 154987758 -642362 - B1F SINE Alu -51 98 12 1 1767 630 214 54 60 chr4 154987859 154988008 -642112 - B1_Mur3 SINE Alu 0 149 2 1 1767 468 171 18 9 chr4 154988503 154988615 -641505 + T-rich Low_complexity Low_complexity 3 115 0 1 1767 406 115 0 0 chr4 154988616 154988677 -641443 - B1_Mus2 SINE Alu 0 147 87 1 1767 677 243 0 39 chr4 154988952 154989106 -641014 - B1_Mur2 SINE Alu -1 148 1 1 1767 1040 223 0 49 chr4 154989110 154989336 -640784 - B3 SINE B2 0 216 2 1 1767 402 256 76 17 chr4 154989339 154989458 -640662 - ID_B1 SINE B4 -1 223 98 1 1767 677 181 0 49 chr4 154989814 154989936 -640184 - B1_Mur2 SINE Alu -11 138 23 1 1767 210 160 0 0 chr4 154990452 154990502 -639618 + T-rich Low_complexity Low_complexity 1 50 0 1 1767 865 84 17 0 chr4 154990502 154990621 -639499 - B1_Mus2 SINE Alu 0 147 27 1 1767 1721 21 0 0 chr4 154990624 154990816 -639304 - B2_Mm1a SINE B2 0 193 2 1 1767 823 86 14 79 chr4 154990903 154991042 -639078 + B1_Mur4 SINE Alu 9 138 -12 1 1767 657 194 43 0 chr4 154991057 154991196 -638924 - B1_Mur1 SINE Alu 0 149 5 1 1767 217 253 202 0 chr4 154992047 154992126 -637994 + B1_Mur1 SINE Alu 26 120 -29 1 1767 998 180 60 0 chr4 154992197 154992364 -637756 - B3 SINE B2 -38 178 2 1 1767 261 0 0 0 chr4 154993138 154993167 -636953 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1 1767 594 262 95 17 chr4 154994922 154995082 -635038 + B3A SINE B2 1 159 -39 1 1767 183 80 0 0 chr4 154995082 154995107 -635013 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1767 295 264 87 119 chr4 154995107 154995131 -634989 + B2_Mm2 SINE B2 155 179 -16 1 1767 865 140 0 7 chr4 154995140 154995277 -634843 + B1_Mus1 SINE Alu 12 147 -1 1 1767 355 201 129 99 chr4 154995498 154995512 -634608 - B2_Mm2 SINE B2 0 195 182 1 1767 1285 41 0 0 chr4 154995512 154995659 -634461 - B1_Mus1 SINE Alu 0 148 2 1 1767 616 185 66 31 chr4 154995659 154995815 -634305 - B3 SINE B2 -14 181 20 1 1767 384 264 37 9 chr4 154995837 154995944 -634176 + PB1D10 SINE Alu 3 112 -5 1 1767 853 157 0 41 chr4 154995994 154996140 -633980 + B1_Mur3 SINE Alu 10 149 0 1 1767 204 111 0 0 chr4 154996329 154996365 -633755 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1767 1188 62 7 0 chr4 154996365 154996511 -633609 - B1_Mus1 SINE Alu 0 148 2 1 1767 348 349 0 0 chr4 154996586 154996692 -633428 - PB1D10 SINE Alu -11 106 1 1 1767 241 293 26 39 chr4 154996789 154996867 -633253 - ID4_ SINE ID -4 79 3 1 1767 21 0 0 0 chr4 154997360 154997381 -632739 + AT_rich Low_complexity Low_complexity 1 21 0 1 1767 354 225 306 0 chr4 154997543 154997654 -632466 - B1_Mur4 SINE Alu -5 145 1 1 1767 830 158 14 14 chr4 154997895 154998043 -632077 - B1_Mur3 SINE Alu 0 149 2 1 1767 366 169 13 101 chr4 155000490 155000569 -629551 + PB1D9 SINE Alu 22 93 -27 1 1767 297 244 0 0 chr4 155000574 155000660 -629460 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 1767 254 307 55 33 chr4 155000733 155000824 -629296 + PB1D10 SINE Alu 24 116 -1 3 1767 449 259 35 26 chr4 155001020 155001135 -628985 - RMER30 DNA MER1_type -5 197 82 4 1767 557 262 33 91 chr4 155001112 155001322 -628798 - B3A SINE B2 0 198 1 5 1767 671 207 105 84 chr4 155001360 155001550 -628570 + B3 SINE B2 12 205 -11 6 1767 686 190 72 7 chr4 155001591 155001729 -628391 - B1_Mm SINE Alu 0 147 1 7 1767 1613 52 0 0 chr4 155002033 155002225 -627895 - B2_Mm1t SINE B2 -1 192 1 8 1767 1671 26 0 0 chr4 155002310 155002500 -627620 - B2_Mm1a SINE B2 -2 191 2 9 1767 249 174 179 49 chr4 155002544 155002656 -627464 - L1MA9 LINE L1 -5 6329 6201 1 1767 249 57 0 0 chr4 155003284 155003319 -626801 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 1767 1163 88 0 0 chr4 155003320 155003468 -626652 - B1_Mus1 SINE Alu 0 148 1 1 1767 472 306 0 0 chr4 155003774 155003885 -626235 + B3A SINE B2 1 111 -87 1 1767 486 293 111 15 chr4 155003911 155004046 -626074 - B3A SINE B2 -24 174 27 1 1767 762 101 0 30 chr4 155004051 155004184 -625936 - BC1_Mm scRNA scRNA -23 129 1 1 1767 886 303 78 10 chr4 155004536 155004843 -625277 - MTEb LTR MaLR 0 379 52 1 1767 761 215 27 14 chr4 155005089 155005235 -624885 + B1_Mur1 SINE Alu 2 149 0 1 1767 771 219 47 71 chr4 155005335 155005546 -624574 - MTE2a LTR MaLR -1 378 173 1 1767 363 247 199 53 chr4 155005574 155005745 -624375 - B3A SINE B2 0 198 3 1 1767 452 212 0 23 chr4 155006112 155006199 -623921 + ID_B1 SINE B4 132 216 -8 2 1767 985 188 57 0 chr4 155006217 155006409 -623711 + B3 SINE B2 4 206 -10 2 1767 1182 54 0 13 chr4 155006657 155006806 -623314 - B1_Mus2 SINE Alu 0 147 1 2 1767 241 313 0 0 chr4 155006820 155006903 -623217 + L1M4c LINE L1 1582 1664 -4878 2 1767 254 289 0 0 chr4 155006982 155007062 -623058 + L1M4c LINE L1 1861 1930 -4716 2 1767 517 182 34 0 chr4 155007161 155007249 -622871 + B1_Mur1 SINE Alu 49 139 -10 2 1767 265 326 31 31 chr4 155007280 155007378 -622742 + PB1D10 SINE Alu 1 98 -19 2 1767 23 54 0 0 chr4 155007433 155007470 -622650 + AT_rich Low_complexity Low_complexity 1 37 0 2 1767 875 142 8 0 chr4 155007960 155008094 -622026 + B1_Mus1 SINE Alu 2 136 -12 2 1767 189 0 0 0 chr4 155008121 155008142 -621978 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 2 1767 256 225 136 12 chr4 155008620 155008701 -621419 - B3 SINE B2 -4 212 122 2 1767 237 223 61 170 chr4 155008803 155008859 -621261 - L1M4c LINE L1 -4068 2681 2631 3 1767 705 171 311 0 chr4 155008859 155009023 -621097 - B3 SINE B2 0 216 2 3 1767 237 223 61 170 chr4 155009023 155009296 -620824 - L1M4c LINE L1 -4119 2630 2388 3 1767 180 0 0 0 chr4 155009350 155009370 -620750 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1767 1438 45 17 17 chr4 155009370 155009549 -620571 - B2_Mm2 SINE B2 -15 180 2 3 1767 436 299 90 25 chr4 155009587 155009909 -620211 - L1M4c LINE L1 -4951 1798 1456 3 1767 372 43 0 0 chr4 155009959 155010005 -620115 + (TCC)n Simple_repeat Simple_repeat 3 48 0 3 1767 251 284 52 21 chr4 155010016 155010113 -620007 - B1F SINE Alu -31 118 19 3 1767 258 183 112 28 chr4 155010119 155010226 -619894 - L1M4c LINE L1 -5354 1395 1280 3 1767 273 179 0 16 chr4 155010698 155010783 -619337 - L1M4c LINE L1 -5363 1244 1167 3 1767 613 217 15 30 chr4 155010787 155010920 -619200 - B1_Mur2 SINE Alu 0 149 19 3 1767 2204 159 78 47 chr4 155010954 155011287 -618833 - MTC LTR MaLR 0 421 82 3 1767 1392 95 21 0 chr4 155011287 155011477 -618643 - B2_Mm2 SINE B2 -1 194 1 3 1767 2204 159 78 47 chr4 155011477 155011551 -618569 - MTC LTR MaLR -340 81 1 3 1767 709 175 0 112 chr4 155011616 155011777 -618343 - B1_Mur2 SINE Alu 0 149 7 3 1767 672 264 237 16 chr4 155011918 155012415 -617705 - L1M4c LINE L1 -5761 988 382 3 1767 398 248 213 16 chr4 155012985 155013112 -617008 + RSINE1 SINE B4 3 154 -11 4 1767 409 299 87 105 chr4 155013266 155013438 -616682 + ID_B1 SINE B4 52 220 -4 4 1767 867 194 124 16 chr4 155013438 155013632 -616488 + B3 SINE B2 2 216 0 4 1767 397 168 0 29 chr4 155013905 155014009 -616111 + GA-rich Low_complexity Low_complexity 1 101 0 4 1767 3545 30 0 0 chr4 155014087 155014483 -615637 - MTA_Mm LTR MaLR 0 396 1 4 1767 377 230 0 86 chr4 155014603 155014684 -615436 + ID4_ SINE ID 1 74 -9 4 1767 652 207 62 28 chr4 155017296 155017440 -612680 - B1_Mur1 SINE Alu 0 149 1 4 1767 415 262 152 24 chr4 155017447 155017572 -612548 - B1F2 SINE Alu -7 142 2 4 1767 4430 179 127 51 chr4 155017830 155018222 -611898 - RMER12 LTR ERVK -127 1195 735 4 1767 1526 53 27 0 chr4 155018222 155018409 -611711 - B2_Mm1a SINE B2 0 193 2 4 1767 4430 179 127 51 chr4 155018409 155018791 -611329 - RMER12 LTR ERVK -588 734 335 4 1767 1215 75 0 0 chr4 155018791 155018938 -611182 + B1_Mus2 SINE Alu 1 147 0 5 1767 4430 179 127 51 chr4 155018938 155019273 -610847 - RMER12 LTR ERVK -988 334 1 4 1767 284 283 10 71 chr4 155019273 155019357 -610763 - B2_Mm2 SINE B2 -100 95 18 5 1767 273 155 0 0 chr4 155019369 155019427 -610693 + T-rich Low_complexity Low_complexity 1 58 0 5 1767 510 17 0 0 chr4 155019453 155019512 -610608 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 5 1767 1162 78 0 0 chr4 155019513 155019655 -610465 - B1_Mus1 SINE Alu -6 142 1 5 1767 1613 214 135 18 chr4 155019657 155020110 -610010 - Lx8 LINE L1 -129 7344 6839 5 1767 397 292 52 1 chr4 155020146 155020295 -609825 - L1_Mur2 LINE L1 -776 5524 5336 5 1767 533 255 34 47 chr4 155020295 155020443 -609677 - B3 SINE B2 -3 213 68 5 1767 290 170 94 0 chr4 155020517 155020570 -609550 - B3A SINE B2 -131 67 10 5 1767 367 243 241 17 chr4 155020590 155020655 -609465 - L1_Mur2 LINE L1 -2097 4046 3943 5 1767 1335 76 16 26 chr4 155020655 155020844 -609276 + B2_Mm2 SINE B2 1 187 -8 5 1767 388 218 226 22 chr4 155020844 155020934 -609186 - L1_Mur2 LINE L1 -1938 3942 3829 5 1767 525 16 0 0 chr4 155020934 155020996 -609124 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1767 388 218 225 22 chr4 155020996 155021086 -609034 - L1_Mur2 LINE L1 -2050 3830 3718 5 1767 227 104 20 40 chr4 155021097 155021147 -608973 + T-rich Low_complexity Low_complexity 2 50 0 6 1767 1200 75 0 0 chr4 155021147 155021294 -608826 - B1_Mus2 SINE Alu 0 147 1 6 1767 627 221 23 171 chr4 155021296 155021471 -608649 - B1_Mus2 SINE Alu 0 149 1 6 1767 385 218 0 13 chr4 155021472 155021551 -608569 - PB1D7 SINE Alu 0 120 43 6 1767 431 204 162 19 chr4 155026834 155026939 -603181 + PB1D9 SINE Alu 1 120 0 6 1767 1111 62 7 7 chr4 155034331 155034478 -595642 + B1_Mus1 SINE Alu 2 148 0 6 1767 180 0 0 0 chr4 155034479 155034499 -595621 + (GAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1767 799 213 7 0 chr4 155035645 155035786 -594334 + B1_Mur1 SINE Alu 1 142 -7 6 1767 1452 74 11 0 chr4 155036579 155036769 -593351 + B2_Mm1t SINE B2 1 192 -1 6 1767 1440 65 38 0 chr4 155038024 155038209 -591911 + B2_Mm1a SINE B2 1 192 -1 6 1767 1035 195 128 96 chr4 155039765 155040152 -589968 + MT2A LTR ERVL 1 511 -73 7 1767 311 161 0 31 chr4 155040172 155040236 -589884 + B1_Mur3 SINE Alu 85 146 -3 7 1767 369 0 0 0 chr4 155040258 155040299 -589821 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 7 1767 271 83 0 0 chr4 155040299 155040335 -589785 + MT2A LTR ERVL 498 533 0 7 1767 308 310 37 95 chr4 155040885 155040950 -589170 + B4A SINE B4 43 220 -72 7 1767 416 146 30 119 chr4 155040935 155041036 -589084 + MT2B LTR ERVL 166 257 -344 7 1767 879 137 0 0 chr4 155040950 155041074 -589046 + B1_Mur3 SINE Alu 19 142 -7 7 1767 1489 73 5 0 chr4 155041501 155041692 -588428 + B2_Mm1t SINE B2 1 192 -1 7 1767 1654 32 0 0 chr4 155041820 155042007 -588113 + B2_Mm1a SINE B2 2 188 -5 7 1767 574 236 0 108 chr4 155043769 155043935 -586185 - B1_Mur1 SINE Alu 0 149 2 7 1767 2529 107 30 10 chr4 155044402 155044797 -585323 + RLTR9D LTR ERVK 1 403 0 7 1767 342 322 33 0 chr4 155044864 155044985 -585135 - PB1 SINE Alu -2 125 1 8 1767 691 220 15 0 chr4 155045052 155045184 -584936 - B1_Mur1 SINE Alu -7 142 9 8 1767 360 326 44 81 chr4 155045184 155045208 -584912 - B4 SINE B4 -69 219 70 8 1767 2034 199 80 55 chr4 155045373 155045561 -584559 - RLTR31_Mm LTR ERVK 0 561 358 8 1767 1200 68 0 0 chr4 155045561 155045708 -584412 + B1_Mus2 SINE Alu 1 147 0 8 1767 2034 199 80 55 chr4 155045708 155046066 -584054 - RLTR31_Mm LTR ERVK -204 357 1 8 1767 370 235 47 87 chr4 155046134 155046283 -583837 + MT2B LTR ERVL 136 278 -323 8 1767 711 179 0 0 chr4 155046171 155046288 -583832 + B1_Mus1 SINE Alu 10 126 -22 8 1767 572 79 0 0 chr4 155046332 155046408 -583712 + B2_Mm1t SINE B2 58 133 -60 8 1767 192 77 0 0 chr4 155046408 155046434 -583686 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1767 935 101 2 2 chr4 155046434 155046570 -583550 - B1_Mus1 SINE Alu 0 148 14 8 1767 872 162 30 24 chr4 155046583 155046747 -583373 - B2_Mm2 SINE B2 -28 167 3 9 1767 1456 34 56 0 chr4 155046758 155046936 -583184 - B2_Mm1a SINE B2 -5 188 1 9 1767 283 253 0 85 chr4 155046961 155046972 -583148 - BC1_Mm scRNA scRNA -75 77 3 9 1767 364 254 0 0 chr4 155046972 155047043 -583077 - ID SINE ID -151 73 3 9 1767 577 140 183 9 chr4 155047069 155047184 -582936 - B1_Mus1 SINE Alu -1 147 13 9 1767 922 81 189 26 chr4 155047185 155047338 -582782 + B2_Mm2 SINE B2 1 178 -17 9 1767 328 249 86 80 chr4 155047851 155048026 -582094 + MYSERV-int LTR ERVK 19 194 -6356 9 1767 1978 147 48 13 chr4 155048026 155048398 -581722 + ORR1B1 LTR MaLR 1 353 -41 9 1767 1167 121 6 11 chr4 155048364 155048540 -581580 + B2_Mm2 SINE B2 7 181 -14 9 1767 203 139 0 44 chr4 155048583 155048598 -581522 + (CAA)n Simple_repeat Simple_repeat 3 16 0 9 1767 1233 48 0 7 chr4 155048598 155048745 -581375 + B1_Mus2 SINE Alu 2 147 0 1 1767 203 139 0 44 chr4 155048745 155048774 -581346 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1767 615 237 65 0 chr4 155049169 155049308 -580812 + B1_Mus1 SINE Alu 1 148 0 1 1767 1286 34 0 0 chr4 155049320 155049467 -580653 + B1_Mm SINE Alu 1 147 0 1 1767 985 98 268 0 chr4 155049500 155049664 -580456 + B3 SINE B2 3 210 -6 1 1767 1178 68 0 20 chr4 155049668 155049817 -580303 - B1_Mus1 SINE Alu -1 147 2 1 1767 779 146 0 0 chr4 155049891 155050014 -580106 + B1_Mur3 SINE Alu 26 148 -1 1 1767 2147 123 41 41 chr4 155050721 155051086 -579034 - IAPLTR1_Mm LTR ERVK -2 365 1 1 1767 53681 16 3 6 chr4 155051086 155057553 -572567 - IAPEz-int LTR ERVK 0 6481 6 1 1767 2147 123 41 41 chr4 155057553 155057918 -572202 - IAPLTR1_Mm LTR ERVK -2 365 1 1 1768 1534 48 21 5 chr4 155058224 155058414 -571706 + B2_Mm1t SINE B2 1 193 0 1 1768 233 150 25 0 chr4 155058428 155058468 -571652 - RMER15 LTR ERVL -1 574 534 1 1768 549 211 19 81 chr4 155058657 155058817 -571303 - RMER15-int LTR ERVL -704 4295 4146 1 1768 889 325 100 66 chr4 155058803 155059000 -571120 - RMER15-int LTR ERVL -2554 2445 2237 1 1768 2592 74 39 25 chr4 155059000 155059361 -570759 - L1Md_F2 LINE L1 -1 6581 6216 1 1768 889 321 89 50 chr4 155059361 155060195 -569925 - RMER15-int LTR ERVL -2763 2236 1342 1 1768 1358 250 123 23 chr4 155060198 155060959 -569161 - RMER15-int LTR ERVL -4136 863 27 1 1768 242 308 183 0 chr4 155060981 155061010 -569110 - RMER15 LTR ERVL -2 573 544 1 1768 282 29 0 0 chr4 155061010 155061045 -569075 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1768 242 308 183 0 chr4 155061045 155061119 -569001 - RMER15 LTR ERVL -32 543 452 1 1768 537 149 33 58 chr4 155061119 155061240 -568880 - RMER1C Other Other -6 1336 1219 1 1768 3632 58 2 4 chr4 155061307 155061773 -568347 + LTRIS_Mus LTR ERV1 123 587 0 1 1768 2985 59 101 31 chr4 155061773 155062219 -567901 - LTRIS2 LTR ERV1 -86 478 1 1 1768 1545 150 32 25 chr4 155062219 155062606 -567514 + RMER17A LTR ERVK 488 885 -4 1 1768 617 241 19 65 chr4 155062646 155062801 -567319 - B1_Mur2 SINE Alu 0 149 2 1 1768 324 70 0 0 chr4 155062835 155062878 -567242 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1768 1287 62 0 0 chr4 155062878 155063038 -567082 - B2_Mm1t SINE B2 -33 160 1 1 1768 330 308 9 46 chr4 155063047 155063156 -566964 - PB1D10 SINE Alu -6 111 7 1 1768 228 148 53 53 chr4 155063207 155063253 -566867 - RLTR28 LTR ERVL -20 504 458 1 1768 1250 102 42 21 chr4 155063253 155063444 -566676 - B2_Mm2 SINE B2 0 195 1 1 1768 566 274 35 105 chr4 155063611 155063811 -566309 - RLTR28B LTR ERVL -295 186 1 1 1768 219 204 0 0 chr4 155063814 155063863 -566257 + (TATG)n Simple_repeat Simple_repeat 3 51 0 1 1768 39 38 0 0 chr4 155063877 155063930 -566190 + AT_rich Low_complexity Low_complexity 1 53 0 1 1768 375 287 8 115 chr4 155063938 155064002 -566118 + RSINE1 SINE B4 50 108 -57 1 1768 1226 55 0 7 chr4 155064002 155064150 -565970 + B1_Mm SINE Alu 1 147 0 1 1768 375 287 8 115 chr4 155064150 155064215 -565905 + RSINE1 SINE B4 109 165 0 1 1768 26 30 0 0 chr4 155064217 155064250 -565870 + AT_rich Low_complexity Low_complexity 1 33 0 1 1768 1215 49 0 0 chr4 155065704 155065842 -564278 + B1_Mm SINE Alu 1 138 -9 1 1768 279 0 0 0 chr4 155065842 155065873 -564247 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1768 1086 77 33 0 chr4 155066148 155066303 -563817 - B2_Mm2 SINE B2 -6 189 26 1 1768 1650 171 40 14 chr4 155066485 155066782 -563338 - ORR1B2 LTR MaLR -23 344 40 1 1768 240 188 52 7 chr4 155066762 155066852 -563268 - ORR1B2 LTR MaLR -242 85 1 1 1768 324 198 51 65 chr4 155067663 155067752 -562368 - B1F SINE Alu 0 149 48 1 1768 872 160 58 74 chr4 155067752 155067941 -562179 - B2_Mm2 SINE B2 -8 187 2 1 1768 249 255 31 172 chr4 155067941 155067982 -562138 - PB1 SINE Alu -80 47 18 1 1768 30 83 0 0 chr4 155068527 155068599 -561521 + GC_rich Low_complexity Low_complexity 1 72 0 1 1768 525 263 17 0 chr4 155071523 155071536 -558584 + ID SINE ID 68 82 -142 1 1768 227 383 33 0 chr4 155071536 155071656 -558464 + B1_Mur3 SINE Alu 1 124 -25 1 1768 1297 99 16 10 chr4 155071658 155071851 -558269 + B2_Mm2 SINE B2 2 195 0 1 1768 675 194 36 7 chr4 155072300 155072440 -557680 - B1_Mur2 SINE Alu 0 149 6 1 1768 286 239 113 113 chr4 155072306 155072457 -557663 - B4A SINE B4 -73 219 69 1 1768 383 254 79 39 chr4 155072532 155072552 -557568 - L1MEc LINE L1 -5216 1184 1165 1 1768 674 292 67 0 chr4 155072552 155072761 -557359 - ID_B1 SINE B4 0 224 2 1 1768 383 254 79 39 chr4 155072761 155072867 -557253 - L1MEc LINE L1 -5236 1164 1053 1 1768 331 212 0 29 chr4 155072935 155073003 -557117 + ID_B1 SINE B4 105 170 -54 1 1768 509 286 61 0 chr4 155073012 155073159 -556961 + RSINE1 SINE B4 4 159 -6 1 1768 229 204 91 0 chr4 155073226 155073270 -556850 + PB1D7 SINE Alu 16 63 -57 1 1768 304 225 14 27 chr4 155073289 155073362 -556758 - ID4 SINE ID -11 72 1 1 1768 201 74 0 0 chr4 155073375 155073402 -556718 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 1 1768 864 194 0 0 chr4 155073425 155073569 -556551 - B1_Mur2 SINE Alu 0 149 6 1 1768 340 260 63 73 chr4 155073761 155073952 -556168 + L1M5 LINE L1 5631 5819 -360 1 1768 782 134 81 15 chr4 155073975 155074111 -556009 + B1_Mur3 SINE Alu 3 147 -2 1 1768 613 128 274 0 chr4 155074504 155074621 -555499 + B1_Mur1 SINE Alu 1 149 0 1 1768 846 174 47 23 chr4 155074633 155074804 -555316 + B2_Mm2 SINE B2 2 176 -19 1 1768 216 0 0 0 chr4 155074830 155074854 -555266 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1768 602 184 85 34 chr4 155074869 155074987 -555133 + B1_Mus1 SINE Alu 3 126 -22 1 1768 1041 209 48 5 chr4 155075002 155075209 -554911 + B3 SINE B2 1 216 0 1 1768 469 316 43 0 chr4 155075404 155075521 -554599 - ID_B1 SINE B4 -3 221 100 1 1768 221 180 0 20 chr4 155075615 155075666 -554454 + (TATG)n Simple_repeat Simple_repeat 1 50 0 1 1768 786 175 42 7 chr4 155076769 155076913 -553207 + B1_Mur2 SINE Alu 1 149 0 1 1768 417 228 0 0 chr4 155077121 155077196 -552924 + RLTR14 LTR ERV1 1 75 -307 1 1768 1327 69 0 6 chr4 155077196 155077370 -552750 + B2_Mm2 SINE B2 2 174 -21 1 1768 1042 77 77 0 chr4 155077366 155077521 -552599 + B2_Mm2 SINE B2 27 193 -2 1 1768 748 258 144 45 chr4 155077594 155077886 -552234 + RLTR14 LTR ERV1 62 382 0 1 1768 231 204 40 20 chr4 155077970 155077984 -552136 + RMER6A LTR ERVK 549 564 -156 1 1768 1262 120 49 0 chr4 155077984 155078167 -551953 + B2_Mm2 SINE B2 2 193 -2 1 1768 368 223 138 0 chr4 155078167 155078261 -551859 + RMER6A LTR ERVK 650 756 0 1 1768 1228 42 0 0 chr4 155078343 155078485 -551635 - B1_Mus1 SINE Alu -5 143 2 1 1768 224 191 0 78 chr4 155078674 155078725 -551395 - B1_Mus2 SINE Alu -99 48 2 1 1768 225 0 0 0 chr4 155079360 155079385 -550735 + (CGTTG)n Simple_repeat Simple_repeat 2 26 0 1 1768 22 35 0 0 chr4 155080279 155080308 -549812 + AT_rich Low_complexity Low_complexity 1 29 0 1 1768 678 194 15 37 chr4 155080329 155080463 -549657 - B1_Mus1 SINE Alu 0 148 18 1 1768 317 260 45 91 chr4 155080377 155080487 -549633 - MT2B LTR ERVL -344 257 153 1 1768 224 239 80 53 chr4 155080464 155080539 -549581 - PB1D10 SINE Alu -39 78 2 1 1768 1068 160 25 25 chr4 155080631 155080830 -549290 - URR1B DNA MER1_type 0 225 27 1 1768 256 333 24 24 chr4 155081341 155081424 -548696 - PB1D7 SINE Alu -21 99 17 1 1768 518 157 12 0 chr4 155081518 155081601 -548519 - B1_Mus1 SINE Alu -59 89 6 1 1768 319 232 20 50 chr4 155081744 155081844 -548276 + L1M5 LINE L1 5606 5702 -422 1 1768 681 19 0 237 chr4 155081923 155081978 -548142 - B1_Mus2 SINE Alu -43 104 63 1 1768 1057 75 0 0 chr4 155081978 155082112 -548008 + B1_Mus2 SINE Alu 2 135 -12 1 1768 681 19 0 237 chr4 155082112 155082191 -547929 - B1_Mus2 SINE Alu -85 62 2 1 1768 268 176 59 0 chr4 155082212 155082263 -547857 + PB1D10 SINE Alu 55 108 -9 1 1768 284 180 0 0 chr4 155082221 155082271 -547849 + ID_B1 SINE B4 174 223 -1 1 1768 510 285 129 36 chr4 155082417 155082610 -547510 - B4A SINE B4 0 292 82 1 1768 248 131 0 21 chr4 155082670 155082717 -547403 + C-rich Low_complexity Low_complexity 4 49 0 1 1768 1192 155 5 5 chr4 155082721 155082915 -547205 - B2_Mm2 SINE B2 0 195 2 1 1768 220 257 0 129 chr4 155083765 155083850 -546270 - B1F SINE Alu -63 86 13 1 1768 1112 64 1 5 chr4 155083927 155084076 -546044 - B1_Mus1 SINE Alu -5 143 1 1 1768 538 218 35 140 chr4 155084076 155084088 -546032 - B4 SINE B4 -61 171 79 1 1768 221 204 68 0 chr4 155084584 155084628 -545492 - B3A SINE B2 -151 47 1 1 1768 25 75 0 0 chr4 155085244 155085297 -544823 + AT_rich Low_complexity Low_complexity 1 53 0 1 1768 298 228 20 0 chr4 155085299 155085400 -544720 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1768 521 235 126 22 chr4 155085407 155085542 -544578 - B1_Mur3 SINE Alu 0 149 1 1 1768 436 183 10 79 chr4 155086553 155086654 -543466 + B1F SINE Alu 56 149 0 1 1768 482 292 9 0 chr4 155086704 155086810 -543310 + B1_Mur2 SINE Alu 1 107 -42 1 1768 760 145 17 8 chr4 155086811 155086929 -543191 + PB1D9 SINE Alu 2 120 0 1 1768 21 0 0 0 chr4 155086931 155086952 -543168 + GC_rich Low_complexity Low_complexity 1 21 0 1 1768 720 214 179 42 chr4 155086978 155087168 -542952 + B3 SINE B2 1 216 0 1 1768 973 149 67 22 chr4 155087180 155087358 -542762 - B2_Mm2 SINE B2 -9 186 1 1 1768 1203 55 0 7 chr4 155087449 155087595 -542525 - B1_Mus2 SINE Alu 0 147 3 1 1768 805 181 35 7 chr4 155087599 155087744 -542376 + B1_Mur2 SINE Alu 1 149 0 1 1768 1091 90 21 0 chr4 155088198 155088343 -541777 - B1_Mus1 SINE Alu 0 148 1 1 1768 315 240 64 55 chr4 155088405 155088515 -541605 + PB1D10 SINE Alu 6 116 -1 1 1768 243 161 0 0 chr4 155088608 155088664 -541456 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1768 360 275 108 82 chr4 155088666 155088860 -541260 + B4A SINE B4 94 292 0 1 1768 1066 126 37 42 chr4 155088951 155089142 -540978 - B2_Mm2 SINE B2 -4 191 2 2 1768 268 317 98 52 chr4 155089169 155089322 -540798 - RSINE1 SINE B4 -4 161 2 2 1768 484 269 0 0 chr4 155089329 155089422 -540698 + RSINE1 SINE B4 3 95 -70 2 1768 209 204 0 0 chr4 155089425 155089474 -540646 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 2 1768 222 118 0 0 chr4 155089911 155089945 -540175 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 2 1768 809 194 21 0 chr4 155089950 155090094 -540026 - B1F2 SINE Alu 0 149 3 2 1768 1200 164 33 9 chr4 155090137 155090347 -539773 + URR1B DNA MER1_type 1 215 -10 2 1768 458 272 50 88 chr4 155090347 155090368 -539752 - CYRA11_Mm Unknown Y-chromosome -224 345 165 2 1768 730 200 44 0 chr4 155090563 155090698 -539422 + B1F SINE Alu 1 141 -8 2 1768 814 29 0 29 chr4 155090992 155091097 -539023 - B1_Mus2 SINE Alu 0 147 46 2 1768 275 139 122 122 chr4 155091035 155091117 -539003 - RLTR25B LTR ERVK -519 509 428 2 1768 859 48 175 16 chr4 155091130 155091256 -538864 - B1_Mm SINE Alu 0 147 2 2 1768 395 231 55 79 chr4 155091281 155091408 -538712 - B1_Mur1 SINE Alu 0 149 26 2 1768 272 276 92 33 chr4 155091423 155091543 -538577 - B1F SINE Alu 0 149 23 2 1768 277 226 161 0 chr4 155091585 155091647 -538473 + PB1 SINE Alu 27 98 -29 2 1768 225 94 0 0 chr4 155092342 155092374 -537746 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1768 452 165 12 25 chr4 155092374 155092455 -537665 - B1_Mus2 SINE Alu 0 147 68 2 1768 443 173 330 18 chr4 155092460 155092572 -537548 - B1_Mur2 SINE Alu 0 149 3 2 1768 229 244 10 100 chr4 155092572 155092585 -537535 - ID_B1 SINE B4 -79 145 134 2 1768 1254 113 0 25 chr4 155092607 155092806 -537314 - B2_Mm2 SINE B2 0 195 2 2 1768 1621 42 0 5 chr4 155092839 155093032 -537088 - B2_Mm1t SINE B2 0 193 2 2 1768 26 0 0 0 chr4 155093098 155093124 -536996 + AT_rich Low_complexity Low_complexity 1 26 0 2 1768 633 169 199 16 chr4 155093960 155094146 -535974 - Lx4B LINE L1 -3 7055 6836 2 1768 696 112 51 0 chr4 155094148 155094246 -535874 - U6 snRNA snRNA 0 107 5 2 1768 1204 68 0 0 chr4 155094609 155094757 -535363 + B1_Mus1 SINE Alu 1 148 0 2 1768 354 247 105 21 chr4 155094780 155094875 -535245 + PB1D10 SINE Alu 6 108 -9 2 1768 257 162 83 119 chr4 155095380 155095464 -534656 + MTEa LTR MaLR 3 83 -296 2 1768 239 70 0 85 chr4 155095634 155095653 -534467 + T-rich Low_complexity Low_complexity 25 43 0 2 1768 1097 95 14 0 chr4 155095653 155095800 -534320 - B1_Mur4 SINE Alu 0 150 2 2 1768 239 70 0 85 chr4 155095800 155095827 -534293 + T-rich Low_complexity Low_complexity 1 24 0 2 1768 356 194 32 143 chr4 155095831 155095957 -534163 - B2_Mm2 SINE B2 -4 191 80 2 1768 935 240 14 14 chr4 155095957 155096164 -533956 - B3 SINE B2 -8 208 2 2 1768 231 227 217 43 chr4 155096193 155096354 -533766 + MTEa LTR MaLR 191 379 0 2 1768 754 221 19 99 chr4 155096673 155096722 -533398 - B2_Mm2 SINE B2 -1 194 150 2 1768 968 123 20 33 chr4 155096722 155096873 -533247 - B1_Mur4 SINE Alu 0 150 2 2 1768 754 221 19 99 chr4 155096873 155097034 -533086 - B2_Mm2 SINE B2 -46 149 1 2 1768 1212 61 0 0 chr4 155097202 155097349 -532771 - B1_Mus2 SINE Alu 0 147 1 2 1768 4077 62 27 2 chr4 155098500 155099014 -531106 - L1_Mus3 LINE L1 -3 6635 6109 2 1768 844 132 27 27 chr4 155099365 155099513 -530607 + URR1A DNA MER1_type 79 226 0 2 1768 800 156 56 7 chr4 155099544 155099686 -530434 + B1_Mur4 SINE Alu 2 150 0 2 1768 307 201 207 107 chr4 155099711 155099861 -530259 + RSINE1 SINE B4 1 165 0 2 1768 456 308 56 51 chr4 155099927 155099981 -530139 + B4 SINE B4 42 220 -72 2 1768 744 114 97 8 chr4 155099981 155100105 -530015 + B1_Mur3 SINE Alu 9 143 -6 2 1768 378 280 80 0 chr4 155100250 155100350 -529770 + PB1D10 SINE Alu 2 109 -8 2 1768 692 202 209 21 chr4 155100386 155100573 -529547 + B4 SINE B4 48 269 -23 2 1768 724 201 50 7 chr4 155100897 155101037 -529083 - B1_Mur1 SINE Alu -3 146 1 2 1768 207 0 0 0 chr4 155101554 155101577 -528543 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1768 1193 49 0 0 chr4 155101577 155101715 -528405 - B1_Mus1 SINE Alu -4 144 7 2 1768 1402 73 17 0 chr4 155101716 155101895 -528225 - B2_Mm2 SINE B2 -13 182 1 2 1768 615 277 21 0 chr4 155102587 155102728 -527392 - B1F SINE Alu 0 149 6 2 1768 335 288 108 0 chr4 155102755 155102866 -527254 - B3A SINE B2 -67 131 9 2 1768 243 287 98 10 chr4 155102863 155102965 -527155 - PB1 SINE Alu -3 124 14 2 1768 938 108 0 0 chr4 155103594 155103724 -526396 + B1_Mus1 SINE Alu 10 139 -9 2 1768 281 307 40 0 chr4 155104399 155104474 -525646 + RSINE1 SINE B4 5 82 -83 2 1768 769 193 21 0 chr4 155104680 155104820 -525300 - B1_Mur3 SINE Alu 0 149 7 2 1768 28 48 0 0 chr4 155106198 155106240 -523880 + AT_rich Low_complexity Low_complexity 1 42 0 2 1768 1238 66 90 0 chr4 155106668 155106834 -523286 - B2_Mm2 SINE B2 -14 181 1 2 1768 295 310 58 33 chr4 155107109 155107229 -522891 + MER20 DNA MER1_type 34 156 -63 2 1768 265 267 22 22 chr4 155108842 155108934 -521186 + GA-rich Low_complexity Low_complexity 1 92 0 2 1768 27 49 0 0 chr4 155109054 155109095 -521025 + GC_rich Low_complexity Low_complexity 1 41 0 2 1768 45 45 0 0 chr4 155109132 155109198 -520922 + GC_rich Low_complexity Low_complexity 1 66 0 2 1768 22 0 0 0 chr4 155109293 155109315 -520805 + GC_rich Low_complexity Low_complexity 1 22 0 2 1768 291 248 92 102 chr4 155110342 155110497 -519623 - MIRb SINE MIR -97 179 15 2 1768 198 257 211 0 chr4 155112475 155112584 -517536 - L2 LINE L2 -897 2522 2391 2 1768 291 274 19 47 chr4 155116782 155116889 -513231 + B1F SINE Alu 1 104 -45 2 1768 730 215 35 75 chr4 155116909 155117021 -513099 + B3 SINE B2 16 120 -96 2 1768 658 221 56 14 chr4 155117021 155117163 -512957 - B1_Mur1 SINE Alu 0 149 2 2 1768 730 215 35 75 chr4 155117163 155117251 -512869 + B3 SINE B2 121 208 -8 2 1768 525 229 8 41 chr4 155117522 155117645 -512475 + PB1D7 SINE Alu 1 119 -1 2 1768 235 250 96 14 chr4 155117671 155117744 -512376 - ID4_ SINE ID -2 81 3 2 1768 445 276 48 0 chr4 155117763 155117868 -512252 - PB1D7 SINE Alu -10 110 1 2 1768 272 148 129 47 chr4 155117869 155117954 -512166 + L1M4 LINE L1 5080 5171 -975 2 1768 307 279 22 13 chr4 155117957 155118058 -512062 + B1_Mur1 SINE Alu 43 149 0 2 1768 377 238 0 47 chr4 155118058 155118164 -511956 + L1M3 LINE L1 5194 5294 -846 2 1768 846 205 66 15 chr4 155118178 155118376 -511744 + B3 SINE B2 3 210 -6 2 1768 306 240 67 0 chr4 155118402 155118477 -511643 + B1_Mur2 SINE Alu 70 149 0 2 1768 371 334 82 20 chr4 155118942 155119254 -510866 + MLT1A0 LTR MaLR 19 338 -36 2 1768 1238 61 0 0 chr4 155121665 155121812 -508308 - B1_Mus2 SINE Alu 0 147 1 2 1768 1393 96 11 0 chr4 155123454 155123642 -506478 - B2_Mm1t SINE B2 -3 190 1 2 1768 221 254 16 78 chr4 155126131 155126195 -503925 + ID2 SINE ID 14 73 -10 2 1768 716 169 6 107 chr4 155126359 155126518 -503602 + B1_Mur3 SINE Alu 2 144 -5 2 1768 209 159 23 0 chr4 155126518 155126562 -503558 + GA-rich Low_complexity Low_complexity 4 48 0 2 1768 1702 31 0 0 chr4 155126587 155126779 -503341 + B2_Mm1a SINE B2 2 193 0 2 1768 1237 125 23 0 chr4 155126796 155126972 -503148 + B2_Mm2 SINE B2 2 181 -14 2 1768 468 65 327 27 chr4 155127038 155127148 -502972 + B2_Mm2 SINE B2 47 189 -6 2 1768 210 105 0 0 chr4 155129444 155129482 -500638 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1768 762 164 43 7 chr4 155130469 155130610 -499510 - B1_Mus2 SINE Alu -1 146 1 2 1768 361 292 26 34 chr4 155130614 155130639 -499481 + ID SINE ID 57 84 -140 2 1768 192 40 0 0 chr4 155130639 155130664 -499456 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1768 361 292 26 34 chr4 155130664 155130755 -499365 + ID_B1 SINE B4 85 172 -52 2 1768 611 197 15 29 chr4 155130765 155130901 -499219 + B1_Mus2 SINE Alu 1 134 -13 2 1768 474 18 0 0 chr4 155130903 155130958 -499162 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 2 1768 204 40 0 0 chr4 155130964 155130989 -499131 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1768 557 271 8 8 chr4 155131484 155131618 -498502 + ID_B1 SINE B4 9 142 -82 2 1768 250 299 55 18 chr4 155131556 155131665 -498455 + MT2B LTR ERVL 49 161 -440 2 1768 1152 75 0 13 chr4 155131970 155132119 -498001 + B1_Mus2 SINE Alu 1 147 0 2 1768 208 318 103 20 chr4 155132872 155133014 -497106 + MIRb SINE MIR 43 197 -79 2 1768 594 229 25 0 chr4 155133622 155133740 -496380 - B1_Mur1 SINE Alu -14 135 15 2 1768 312 341 65 8 chr4 155133633 155133757 -496363 - B4 SINE B4 -81 211 81 2 1768 905 221 56 0 chr4 155133956 155134151 -495969 - B3 SINE B2 -10 206 1 2 1768 357 198 284 0 chr4 155134178 155134294 -495826 + B1_Mur3 SINE Alu 1 149 0 2 1768 216 0 0 0 chr4 155135421 155135445 -494675 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1768 2102 191 102 14 chr4 155136403 155136844 -493276 - RMER19B LTR ERVK -7 895 416 2 1768 483 240 88 0 chr4 155136854 155136979 -493141 - B1_Mus1 SINE Alu -3 145 10 2 1768 243 0 0 0 chr4 155137093 155137120 -493000 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1768 1269 27 7 0 chr4 155137217 155137363 -492757 - B1_Mus2 SINE Alu 0 147 1 3 1768 369 299 9 27 chr4 155137481 155137591 -492529 + B3A SINE B2 1 108 -90 3 1768 1198 69 0 0 chr4 155137680 155137825 -492295 - B1_Mus2 SINE Alu -2 145 1 3 1768 1572 43 16 0 chr4 155137833 155138020 -492100 - B2_Mm2 SINE B2 -5 190 1 3 1768 335 215 24 48 chr4 155138038 155138121 -491999 + PB1 SINE Alu 44 124 -3 3 1768 198 0 0 0 chr4 155138202 155138224 -491896 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 3 1768 904 227 67 43 chr4 155138306 155138605 -491515 - RLTR15 LTR ERVK -53 306 1 3 1768 1044 81 0 0 chr4 155138852 155139000 -491120 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 3 1768 1124 72 0 7 chr4 155139000 155139139 -490981 - B1_Mm SINE Alu -9 138 1 3 1768 573 68 0 0 chr4 155139182 155139256 -490864 - B2_Mm2 SINE B2 -121 74 1 3 1768 539 263 8 8 chr4 155139272 155139406 -490714 + B1_Mur2 SINE Alu 14 147 -2 3 1768 1116 91 127 0 chr4 155139435 155139600 -490520 + B2_Mm2 SINE B2 1 186 -9 3 1768 1163 82 0 0 chr4 155139607 155139754 -490366 + B1_Mus1 SINE Alu 2 148 0 3 1768 249 57 0 0 chr4 155139777 155139812 -490308 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1768 369 197 0 0 chr4 155139811 155139887 -490233 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1768 291 222 0 0 chr4 155140032 155140086 -490034 - B3A SINE B2 -144 54 1 3 1768 282 95 0 0 chr4 155140093 155140135 -489985 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1768 1196 68 0 0 chr4 155140135 155140282 -489838 - B1_Mus2 SINE Alu 0 147 1 3 1768 394 296 7 58 chr4 155140284 155140438 -489682 - B3A SINE B2 0 198 53 3 1768 1236 108 32 11 chr4 155140440 155140628 -489492 - B2_Mm2 SINE B2 -2 193 2 3 1768 774 200 271 0 chr4 155140635 155140805 -489315 - B3 SINE B2 0 216 1 3 1768 883 169 21 7 chr4 155140811 155140954 -489166 - B1_Mus1 SINE Alu -1 147 3 3 1768 282 258 60 15 chr4 155141657 155141724 -488396 + RSINE1 SINE B4 2 71 -94 3 1768 767 207 0 35 chr4 155141783 155141928 -488192 + B1_Mur4 SINE Alu 2 141 -9 3 1768 216 103 26 0 chr4 155142225 155142264 -487856 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1768 1196 48 0 14 chr4 155142271 155142419 -487701 - B1_Mus2 SINE Alu -1 146 1 3 1768 1204 48 7 0 chr4 155150328 155150474 -479646 + B1_Mus1 SINE Alu 2 148 0 3 1768 711 65 0 0 chr4 155150482 155150575 -479545 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1768 844 260 73 13 chr4 155151234 155151468 -478652 - MTD LTR MaLR -167 252 5 3 1768 816 146 8 0 chr4 155151570 155151700 -478420 - B1_Mur4 SINE Alu 0 150 20 3 1768 233 269 38 13 chr4 155152235 155152314 -477806 + ORR1D1 LTR MaLR 1 81 -293 3 1768 1669 26 0 15 chr4 155152408 155152603 -477517 + B2_Mm1a SINE B2 2 193 0 3 1768 531 93 0 0 chr4 155152763 155152838 -477282 - B1_Mur4 SINE Alu -8 142 68 3 1768 568 17 10 132 chr4 155153468 155153673 -476447 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 3 1768 265 274 0 21 chr4 155154559 155154583 -475537 - RMER17C LTR ERVK -118 292 270 3 1768 628 193 17 17 chr4 155154583 155154699 -475421 - PB1D7 SINE Alu -3 117 2 3 1768 265 274 0 21 chr4 155154699 155154771 -475349 - RMER17C LTR ERVK -141 269 199 3 1768 907 83 35 12 chr4 155154771 155154942 -475178 + (GAA)n Simple_repeat Simple_repeat 3 177 0 3 1768 307 245 73 28 chr4 155155549 155155658 -474462 + PB1D10 SINE Alu 3 116 -1 3 1768 524 215 130 65 chr4 155155814 155155968 -474152 + RSINE1 SINE B4 2 165 0 3 1768 787 218 0 0 chr4 155155986 155156133 -473987 + B1_Mus1 SINE Alu 1 147 -1 3 1768 774 172 271 6 chr4 155156386 155156556 -473564 + B3 SINE B2 2 216 0 3 1768 897 164 20 14 chr4 155156602 155156750 -473370 + B1_Mur4 SINE Alu 1 149 -1 3 1768 1566 58 21 0 chr4 155156752 155156943 -473177 + B2_Mm2 SINE B2 1 195 0 3 1768 497 158 31 10 chr4 155156994 155157090 -473030 - MTD LTR MaLR -66 353 256 3 1768 300 218 16 172 chr4 155157169 155157291 -472829 + MT2B LTR ERVL 156 258 -343 3 1768 439 216 0 110 chr4 155157185 155157294 -472826 + B1_Mus1 SINE Alu 11 107 -41 3 1768 29 28 0 0 chr4 155157294 155157330 -472790 + AT_rich Low_complexity Low_complexity 1 36 0 3 1768 268 246 128 10 chr4 155157335 155157440 -472680 + ID4_ SINE ID 4 115 -37 3 1768 666 200 192 37 chr4 155157712 155157899 -472221 + B3 SINE B2 1 216 0 3 1768 231 250 0 0 chr4 155159049 155159101 -471019 + G-rich Low_complexity Low_complexity 1 52 0 3 1768 23 0 0 0 chr4 155159215 155159238 -470882 + GC_rich Low_complexity Low_complexity 1 23 0 3 1768 298 238 150 0 chr4 155160380 155160423 -469697 + B3 SINE B2 125 167 -49 3 1768 324 0 0 0 chr4 155160423 155160459 -469661 + (CATA)n Simple_repeat Simple_repeat 4 39 0 3 1768 298 238 150 0 chr4 155160459 155160495 -469625 + B3 SINE B2 168 215 -1 3 1768 441 0 0 0 chr4 155160558 155160607 -469513 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1768 631 173 10 0 chr4 155160608 155160712 -469408 - Lx5 LINE L1 -176 6874 6770 3 1768 1472 165 20 3 chr4 155160712 155161004 -469116 - RMER4B LTR ERVK -288 297 1 3 1768 486 223 0 0 chr4 155161004 155161098 -469022 - B3 SINE B2 -122 94 1 3 1768 266 0 0 29 chr4 155161108 155161143 -468977 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1768 1144 72 0 0 chr4 155161143 155161281 -468839 - B1_Mus1 SINE Alu -9 139 2 3 1768 274 65 5 0 chr4 155161386 155161433 -468687 - PB1D9 SINE Alu -100 48 1 3 1768 240 259 100 11 chr4 155161439 155161528 -468592 - B3 SINE B2 0 216 120 3 1768 562 228 40 24 chr4 155161528 155161654 -468466 + B1_Mur1 SINE Alu 1 128 -21 3 1768 1507 6 0 11 chr4 155161676 155161858 -468262 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1768 786 115 34 17 chr4 155161858 155162035 -468085 + GA-rich Low_complexity Low_complexity 1 180 0 3 1768 482 290 0 0 chr4 155162053 155162160 -467960 - B3A SINE B2 -62 136 30 3 1768 315 255 16 84 chr4 155162187 155162292 -467828 + B3A SINE B2 99 202 -14 3 1768 1847 146 374 9 chr4 155162849 155163057 -467063 - RMER4B LTR ERVK 0 585 306 3 1768 2374 52 58 61 chr4 155163057 155163385 -466735 + ORR1A2 LTR MaLR 1 327 0 3 1768 1847 157 102 12 chr4 155163385 155163631 -466489 - RMER4B LTR ERVK -280 305 33 3 1768 185 83 28 0 chr4 155163632 155163668 -466452 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 3 1768 1223 48 7 0 chr4 155163671 155163817 -466303 - B1_Mus1 SINE Alu 0 148 2 3 1768 228 325 25 0 chr4 155164037 155164117 -466003 + RSINE1 SINE B4 84 165 0 3 1768 249 108 0 0 chr4 155166515 155166552 -463568 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 3 1768 592 275 29 0 chr4 155166555 155166693 -463427 - B1_Mur3 SINE Alu -6 143 2 3 1768 1235 41 0 13 chr4 155167372 155167521 -462599 + B1_Mus2 SINE Alu 1 147 0 3 1768 237 194 0 0 chr4 155168214 155168250 -461870 + ID SINE ID 11 46 -178 3 1768 1051 154 95 32 chr4 155168253 155168474 -461646 + RMER5 LTR ERV1 1 235 -299 3 1768 1406 80 27 0 chr4 155168526 155168713 -461407 + B2_Mm1a SINE B2 2 193 0 3 1768 301 92 371 10 chr4 155168714 155168811 -461309 + B2_Mm2 SINE B2 60 191 -4 3 1768 587 220 37 62 chr4 155168806 155169040 -461080 + RLTR15 LTR ERVK 49 279 -80 3 1768 279 0 0 0 chr4 155169040 155169071 -461049 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 1768 1219 54 0 0 chr4 155169145 155169292 -460828 - B1_Mus2 SINE Alu 0 147 1 3 1768 766 234 17 17 chr4 155169377 155169551 -460569 + RMER5 LTR ERV1 231 404 -130 3 1768 407 169 26 0 chr4 155169598 155169675 -460445 - B1_Mus2 SINE Alu 0 147 69 3 1768 404 313 9 9 chr4 155169686 155169802 -460318 - PB1D7 SINE Alu 0 120 5 3 1768 1109 82 0 6 chr4 155169815 155169974 -460146 + (TTTC)n Simple_repeat Simple_repeat 4 161 0 3 1768 638 227 0 0 chr4 155169979 155170089 -460031 - B1_Mur3 SINE Alu -38 111 2 3 1768 372 243 0 112 chr4 155169987 155170103 -460017 - MT2B LTR ERVL -345 256 154 3 1768 241 257 93 28 chr4 155170591 155170699 -459421 + L1MC4 LINE L1 7478 7592 -450 3 1768 420 20 0 0 chr4 155170706 155170755 -459365 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1768 288 303 14 40 chr4 155170806 155170954 -459166 - RCHARR1 DNA MER1_type 0 974 831 3 1768 537 221 90 70 chr4 155171348 155171504 -458616 - B3 SINE B2 0 216 58 3 1768 12083 80 16 92 chr4 155171506 155172248 -457872 + RLTR22_Mur LTR ERVK 1 729 -1119 3 1768 1226 48 0 13 chr4 155172248 155172397 -457723 - B1_Mus1 SINE Alu 0 148 2 3 1768 12083 80 16 92 chr4 155172397 155173654 -456466 + RLTR22_Mur LTR ERVK 730 1848 0 3 1768 304 226 0 31 chr4 155173654 155173716 -456404 - B3 SINE B2 -155 61 2 3 1768 726 214 2 0 chr4 155173761 155173899 -456221 - B1_Mus1 SINE Alu 0 150 11 3 1768 1406 101 102 32 chr4 155173899 155174145 -455975 - RMER4A LTR ERVK -2 464 202 3 1768 915 59 0 8 chr4 155174138 155174258 -455862 + B1_Mus2 SINE Alu 29 147 0 3 1768 1097 97 126 0 chr4 155174279 155174453 -455667 - RMER4A LTR ERVK -252 214 19 3 1768 816 286 22 53 chr4 155174453 155174808 -455312 + RLTR15 LTR ERVK 1 344 -15 3 1768 854 223 37 16 chr4 155174866 155175053 -455067 - B3 SINE B2 -25 191 1 3 1768 1212 68 0 0 chr4 155175186 155175332 -454788 - B1_Mm SINE Alu -1 146 1 3 1768 1389 55 55 0 chr4 155175347 155175528 -454592 - B2_Mm1a SINE B2 -2 191 1 3 1768 993 180 48 14 chr4 155175540 155175749 -454371 + Lx5 LINE L1 6835 7050 0 3 1768 1360 121 0 33 chr4 155175839 155176053 -454067 + RMER10B LTR ERVL 1 207 -191 4 1768 459 101 14 0 chr4 155176066 155176135 -453985 + RMER10B LTR ERVL 329 398 0 4 1768 1064 169 22 113 chr4 155176144 155176418 -453702 - Lx7 LINE L1 -310 7386 7138 4 1768 968 118 34 14 chr4 155176443 155176589 -453531 - B1_Mur4 SINE Alu -1 149 1 4 1768 1155 48 7 7 chr4 155176618 155176765 -453355 - B1_Mus1 SINE Alu 0 148 2 4 1768 964 118 135 0 chr4 155176848 155177018 -453102 - B2_Mm1a SINE B2 0 193 1 4 1768 294 95 0 0 chr4 155177308 155177350 -452770 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1768 863 37 73 0 chr4 155177350 155177459 -452661 - B2_Mm1t SINE B2 -75 118 2 4 1768 324 0 0 0 chr4 155178226 155178262 -451858 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 1768 332 297 35 18 chr4 155178425 155178538 -451582 + B3A SINE B2 84 198 0 4 1768 216 0 0 0 chr4 155178541 155178565 -451555 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1768 313 319 62 62 chr4 155178811 155178955 -451165 + MER5A DNA MER1_type 44 187 -2 4 1768 237 235 0 56 chr4 155179311 155179365 -450755 - ID4_ SINE ID -7 76 26 4 1768 399 334 105 45 chr4 155179396 155179667 -450453 - B4A SINE B4 -18 274 3 4 1768 305 321 40 113 chr4 155179672 155179733 -450387 - B4 SINE B4 -8 284 226 4 1768 207 0 0 0 chr4 155179733 155179756 -450364 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1768 305 321 40 113 chr4 155179756 155179845 -450275 - B4 SINE B4 -67 225 145 4 1768 608 79 11 11 chr4 155179883 155179973 -450147 + B2_Mm2 SINE B2 2 91 -104 4 1768 22 35 0 0 chr4 155179976 155180005 -450115 + AT_rich Low_complexity Low_complexity 1 29 0 4 1768 498 250 116 43 chr4 155180136 155180274 -449846 - B1F1 SINE Alu -1 148 1 4 1768 776 204 0 20 chr4 155180337 155180487 -449633 - B1_Mur2 SINE Alu -2 147 1 4 1768 321 247 13 0 chr4 155180493 155180570 -449550 - PB1D9 SINE Alu -1 119 42 4 1768 259 283 42 106 chr4 155180500 155180642 -449478 + RLTR14 LTR ERV1 131 263 -119 4 1768 752 221 0 7 chr4 155180743 155180884 -449236 + B1_Mur2 SINE Alu 1 140 -9 4 1768 213 39 0 0 chr4 155180884 155180910 -449210 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 4 1768 603 0 0 0 chr4 155180910 155180976 -449144 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1768 351 0 0 0 chr4 155181376 155181415 -448705 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1768 1188 30 0 0 chr4 155181415 155181549 -448571 - B1_Mus1 SINE Alu -10 138 5 4 1768 911 219 57 10 chr4 155181586 155181780 -448340 - B3 SINE B2 -10 206 4 4 1768 252 211 283 22 chr4 155182440 155182532 -447588 - PB1D9 SINE Alu -2 118 3 4 1768 381 279 71 47 chr4 155183797 155184122 -445998 - RMER15 LTR ERVL -18 557 58 4 1768 1287 34 0 0 chr4 155184137 155184283 -445837 - B1_Mus1 SINE Alu 0 148 3 4 1768 405 0 0 0 chr4 155184299 155184344 -445776 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1768 412 215 89 0 chr4 155184352 155184431 -445689 - B1_Mus2 SINE Alu -61 86 1 4 1768 521 338 38 6 chr4 155184814 155184972 -445148 - ID_B1 SINE B4 -61 163 1 4 1768 695 182 55 55 chr4 155185907 155186070 -444050 - B2_Mm2 SINE B2 -32 163 1 4 1768 611 131 118 34 chr4 155186095 155186214 -443906 - B1_Mur3 SINE Alu 0 149 21 4 1768 423 225 147 38 chr4 155186097 155186254 -443866 - ID_B1 SINE B4 0 224 51 4 1768 217 216 0 0 chr4 155186638 155186689 -443431 + (CGG)n Simple_repeat Simple_repeat 2 52 0 4 1768 273 306 117 27 chr4 155187922 155188033 -442087 - MER20 DNA MER1_type -6 213 93 4 1768 539 236 27 9 chr4 155188124 155188235 -441885 + RSINE1 SINE B4 22 134 -31 4 1768 367 312 29 81 chr4 155188285 155188421 -441699 + RSINE1 SINE B4 3 131 -34 4 1768 406 273 62 35 chr4 155188517 155188661 -441459 - B1_Mur3 SINE Alu -1 148 1 4 1768 318 263 186 101 chr4 155188705 155188904 -441216 + MER2 DNA MER2_type 15 230 -115 4 1769 264 267 0 0 chr4 155189757 155189817 -440303 + ID_B1 SINE B4 158 217 -7 4 1769 679 159 18 9 chr4 155189843 155189957 -440163 + B1F1 SINE Alu 26 140 -9 4 1769 1203 42 0 7 chr4 155189991 155190135 -439985 + B1_Mus2 SINE Alu 3 145 -2 4 1769 1027 125 11 6 chr4 155190244 155190421 -439699 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 4 1769 666 192 121 11 chr4 155190421 155190595 -439525 - B2_Mm2 SINE B2 -2 193 1 4 1769 504 238 212 30 chr4 155190627 155190792 -439328 - B4 SINE B4 -1 291 97 4 1769 771 162 293 0 chr4 155190794 155190961 -439159 + B3 SINE B2 1 216 0 4 1769 797 197 7 33 chr4 155190987 155191139 -438981 + B1_Mur3 SINE Alu 2 149 0 4 1769 262 267 200 0 chr4 155191151 155191226 -438894 - B4 SINE B4 -183 109 20 4 1769 504 248 138 8 chr4 155191446 155191576 -438544 + B1_Mur1 SINE Alu 1 147 -2 4 1769 225 0 0 0 chr4 155194703 155194728 -435392 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 1769 513 263 0 17 chr4 155194729 155194845 -435275 - PB1D9 SINE Alu -5 115 2 4 1769 1266 87 55 0 chr4 155195279 155195462 -434658 - B2_Mm1a SINE B2 0 193 1 4 1769 530 73 0 79 chr4 155196313 155196402 -433718 - B1_Mus2 SINE Alu -1 149 65 4 1769 477 250 70 37 chr4 155196402 155196589 -433531 - B2_Mm2 SINE B2 -1 194 2 4 1769 1374 71 33 0 chr4 155196589 155196603 -433517 - B2_Mm2 SINE B2 -5 190 174 4 1769 216 0 0 0 chr4 155196603 155196627 -433493 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1769 1374 71 33 0 chr4 155196627 155196795 -433325 - B2_Mm2 SINE B2 -22 173 3 4 1769 813 175 7 40 chr4 155196827 155196976 -433144 - B1_Mus2 SINE Alu -1 146 3 4 1769 787 220 0 0 chr4 155197035 155197167 -432953 + B1_Mus1 SINE Alu 2 133 -15 4 1769 1119 90 7 0 chr4 155197208 155197353 -432767 + B1_Mus1 SINE Alu 1 146 -2 4 1769 608 183 229 0 chr4 155199276 155199429 -430691 + URR1B DNA MER1_type 38 225 0 4 1769 468 149 278 1 chr4 155199687 155199803 -430317 + B1_Mur1 SINE Alu 7 150 0 4 1769 1247 77 37 27 chr4 155199921 155200108 -430012 - B2_Mm2 SINE B2 -6 189 1 4 1769 657 221 24 6 chr4 155200125 155200289 -429831 - RLTR18-int LTR ERVK -2359 3002 2836 4 1769 236 149 0 21 chr4 155200693 155200741 -429379 + C-rich Low_complexity Low_complexity 2 48 0 4 1769 419 318 16 10 chr4 155200759 155200953 -429167 - MYSERV6-int LTR ERVK -8312 647 453 4 1769 398 138 0 0 chr4 155201252 155201317 -428803 - B2_Mm2 SINE B2 -129 66 2 4 1769 1287 96 11 5 chr4 155201649 155201838 -428282 - B2_Mm1t SINE B2 -2 191 2 4 1769 1171 88 0 0 chr4 155202433 155202581 -427539 + B1_Mus1 SINE Alu 1 148 0 4 1769 311 261 0 44 chr4 155202612 155202680 -427440 + ID_B1 SINE B4 32 96 -128 4 1769 480 248 0 89 chr4 155202728 155202852 -427268 + B3A SINE B2 28 140 -58 4 1769 27 29 0 0 chr4 155202931 155202965 -427155 + AT_rich Low_complexity Low_complexity 1 34 0 4 1769 1371 96 37 0 chr4 155202976 155203164 -426956 + B2_Mm2 SINE B2 1 195 0 4 1769 1200 111 0 0 chr4 155203460 155203640 -426480 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1769 308 246 14 0 chr4 155203658 155203727 -426393 - B3A SINE B2 -128 70 1 4 1769 1080 101 0 13 chr4 155203935 155204085 -426035 - B1_Mur4 SINE Alu 0 150 3 4 1769 362 218 31 94 chr4 155204495 155204591 -425529 + RSINE1 SINE B4 15 104 -61 4 1769 1676 16 0 16 chr4 155205052 155205242 -424878 + B2_Mm1a SINE B2 1 187 -6 4 1769 21 0 0 0 chr4 155205500 155205521 -424599 + AT_rich Low_complexity Low_complexity 1 21 0 4 1769 246 32 0 0 chr4 155208713 155208744 -421376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1769 1458 58 10 10 chr4 155208748 155208940 -421180 - B2_Mm1t SINE B2 0 193 2 4 1769 690 170 82 0 chr4 155208942 155209077 -421043 - B1_Mur2 SINE Alu 0 149 4 4 1769 241 290 14 28 chr4 155210070 155210141 -419979 + ID4_ SINE ID 3 72 -11 4 1769 641 139 46 0 chr4 155210171 155210285 -419835 + B1_Mur4 SINE Alu 31 150 0 4 1769 316 257 0 14 chr4 155210280 155210351 -419769 + ID_B1 SINE B4 142 211 -13 4 1769 213 36 0 0 chr4 155210351 155210362 -419758 + (T)n Simple_repeat Simple_repeat 1 11 0 4 1769 1197 68 0 0 chr4 155210362 155210509 -419611 - B1_Mus2 SINE Alu 0 147 1 4 1769 213 36 0 0 chr4 155210509 155210525 -419595 + (T)n Simple_repeat Simple_repeat 1 16 0 4 1769 401 235 101 113 chr4 155210531 155210627 -419493 - B4 SINE B4 -125 167 2 4 1769 630 14 0 0 chr4 155210627 155210699 -419421 - B2_Mm2 SINE B2 -122 73 2 4 1769 194 62 0 30 chr4 155210766 155210799 -419321 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1769 773 113 5 108 chr4 155210799 155210981 -419139 - B1_Mus2 SINE Alu -3 146 5 4 1769 856 231 41 1 chr4 155211012 155211183 -418937 + B3 SINE B2 9 184 -32 4 1769 180 0 0 0 chr4 155211183 155211203 -418917 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1769 485 291 21 90 chr4 155211203 155211220 -418900 + B2_Mm2 SINE B2 167 184 -11 4 1769 613 254 0 61 chr4 155211228 155211375 -418745 + B1_Mur2 SINE Alu 1 138 -11 4 1769 279 79 0 0 chr4 155211375 155211413 -418707 + (CATA)n Simple_repeat Simple_repeat 2 39 0 4 1769 238 310 133 33 chr4 155211447 155211537 -418583 + L2b LINE L2 3272 3370 -5 4 1769 391 236 161 23 chr4 155213187 155213317 -416803 - B1_Mur1 SINE Alu -1 148 1 4 1769 266 68 0 43 chr4 155213475 155213521 -416599 + (TGGGGG)n Simple_repeat Simple_repeat 5 48 0 4 1769 202 224 17 17 chr4 155215367 155215426 -414694 + G-rich Low_complexity Low_complexity 1 59 0 5 1769 894 100 0 30 chr4 155216321 155216486 -413634 + (TTCC)n Simple_repeat Simple_repeat 3 162 0 5 1769 785 116 163 0 chr4 155216500 155216629 -413491 - B1_Mur4 SINE Alu 0 150 1 5 1769 234 0 0 0 chr4 155218386 155218412 -411708 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1769 218 29 0 56 chr4 155218743 155218779 -411341 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1769 737 153 263 29 chr4 155218782 155218957 -411163 + B3 SINE B2 1 216 0 5 1769 1295 27 0 0 chr4 155218980 155219127 -410993 + B1_Mm SINE Alu 1 147 0 5 1769 207 0 0 0 chr4 155219132 155219155 -410965 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1769 958 218 11 11 chr4 155219176 155219357 -410763 - B3 SINE B2 -27 189 9 5 1769 628 53 1 10 chr4 155219421 155219526 -410594 + B1_Mus2 SINE Alu 18 149 -1 5 1769 220 336 66 53 chr4 155219597 155219625 -410495 - B4 SINE B4 -60 232 208 5 1769 255 61 0 0 chr4 155219625 155219658 -410462 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 1769 493 259 18 44 chr4 155219658 155219771 -410349 - PB1D9 SINE Alu -5 115 6 5 1769 25 0 0 0 chr4 155219780 155219805 -410315 + AT_rich Low_complexity Low_complexity 1 25 0 5 1769 549 0 0 0 chr4 155220339 155220400 -409720 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1769 1237 21 0 0 chr4 155220400 155220540 -409580 - B1_Mus2 SINE Alu -7 140 1 5 1769 210 222 21 43 chr4 155221402 155221496 -408624 + (CCCCG)n Simple_repeat Simple_repeat 2 93 0 5 1769 216 235 51 25 chr4 155221648 155221766 -408354 + (CGGG)n Simple_repeat Simple_repeat 3 123 0 5 1769 180 0 0 0 chr4 155230697 155230717 -399403 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 5 1769 456 104 0 0 chr4 155233806 155233873 -396247 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1769 1907 143 156 6 chr4 155238234 155238600 -391520 + MTC LTR MaLR 1 421 0 5 1769 215 278 0 18 chr4 155242194 155242249 -387871 - ID4_ SINE ID 0 83 30 5 1769 777 190 28 0 chr4 155242283 155242425 -387695 - B1_Mus2 SINE Alu -1 146 1 5 1769 227 269 30 10 chr4 155242425 155242492 -387628 - PB1 SINE Alu -42 75 5 5 1769 234 62 0 0 chr4 155244191 155244223 -385897 + (CCA)n Simple_repeat Simple_repeat 1 32 0 5 1769 1277 34 0 0 chr4 155244409 155244555 -385565 + B1_Mus1 SINE Alu 2 147 -1 5 1769 483 63 0 4 chr4 155244781 155244855 -385265 - B1_Mus2 SINE Alu -2 147 76 5 1769 1073 101 0 0 chr4 155246565 155246703 -383417 - B1_Mus1 SINE Alu -10 138 1 5 1769 1098 69 14 14 chr4 155247574 155247588 -382532 - B1_Mus2 SINE Alu 0 147 135 5 1769 282 29 0 0 chr4 155247588 155247623 -382497 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1769 1098 69 14 14 chr4 155247623 155247755 -382365 - B1_Mus2 SINE Alu -13 134 1 5 1769 180 0 0 0 chr4 155248221 155248241 -381879 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1769 457 143 0 31 chr4 155248241 155248354 -381766 - B1_Mur4 SINE Alu -6 144 65 5 1769 368 107 0 0 chr4 155248327 155248383 -381737 - B1_Mur4 SINE Alu -29 121 66 5 1769 363 121 0 0 chr4 155248349 155248407 -381713 - B1_Mur1 SINE Alu -22 127 70 5 1769 779 142 0 0 chr4 155248407 155248534 -381586 - B1_Mur1 SINE Alu -22 127 1 5 1769 1167 167 24 14 chr4 155248559 155248772 -381348 - B3 SINE B2 0 216 2 5 1769 307 201 202 117 chr4 155248772 155248935 -381185 - B3A SINE B2 -3 195 19 5 1769 355 250 67 0 chr4 155248941 155249045 -381075 - PB1D9 SINE Alu 0 120 10 5 1769 770 121 52 15 chr4 155249978 155250112 -380008 - B1_Mur4 SINE Alu 0 150 12 5 1769 360 246 92 69 chr4 155249996 155250127 -379993 - MT2B LTR ERVL -312 289 156 5 1769 477 224 211 33 chr4 155250131 155250283 -379837 - B2_Mm2 SINE B2 -14 181 3 5 1769 207 0 0 0 chr4 155250305 155250328 -379792 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1769 1210 68 0 0 chr4 155250380 155250526 -379594 - B1_Mm SINE Alu 0 147 2 5 1769 1480 243 74 26 chr4 155250679 155251098 -379022 - Lx8 LINE L1 -133 7340 6902 5 1769 189 0 0 0 chr4 155251126 155251147 -378973 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1769 233 174 0 21 chr4 155251170 155251217 -378903 + B1F1 SINE Alu 8 53 -96 5 1769 294 179 0 0 chr4 155251286 155251342 -378778 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1769 717 272 57 10 chr4 155251342 155251535 -378585 - B3 SINE B2 -13 203 2 5 1769 741 175 26 53 chr4 155251544 155251558 -378562 - B1_Mur3 SINE Alu -1 148 135 5 1769 180 0 0 0 chr4 155251558 155251578 -378542 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1769 741 175 26 53 chr4 155251578 155251714 -378406 - B1_Mur3 SINE Alu -15 134 2 5 1769 833 199 7 7 chr4 155251989 155252131 -377989 - B1F2 SINE Alu -7 142 1 5 1769 471 141 0 0 chr4 155252234 155252312 -377808 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1769 879 97 144 46 chr4 155252971 155253166 -376954 + RMER4A LTR ERVK 1 214 -252 5 1769 376 125 15 45 chr4 155253231 155253298 -376822 + MurERV4-int LTR ERVK 2489 2553 -2707 5 1769 227 204 0 22 chr4 155253298 155253343 -376777 + MT2B2 LTR ERVL 244 287 -297 5 1769 8584 129 39 14 chr4 155253359 155254883 -375237 + MurERV4-int LTR ERVK 2839 4399 -861 5 1769 275 301 54 94 chr4 155255005 155255314 -374806 - RLTR12B LTR ERVK -240 288 19 5 1769 345 24 0 0 chr4 155255333 155255375 -374745 + (TTG)n Simple_repeat Simple_repeat 2 43 0 5 1769 273 78 456 25 chr4 155255384 155255463 -374657 - B2_Mm2 SINE B2 -19 176 64 5 1769 1127 110 110 0 chr4 155255502 155255666 -374454 - B2_Mm2 SINE B2 -13 182 1 5 1769 3174 151 34 73 chr4 155255666 155256060 -374060 + MurERV4-int LTR ERVK 4392 4766 -494 5 1769 1293 34 0 0 chr4 155256060 155256207 -373913 - B1_Mus2 SINE Alu 0 147 1 5 1769 3174 151 34 73 chr4 155256207 155256497 -373623 + MurERV4-int LTR ERVK 4767 5049 -211 5 1769 560 77 0 0 chr4 155256497 155256575 -373545 - B2_Mm2 SINE B2 -116 79 2 5 1769 1345 173 42 88 chr4 155256575 155256872 -373248 + RMER4A LTR ERVK 185 466 0 5 1769 587 241 143 31 chr4 155257454 155257677 -372443 - RMER15 LTR ERVL -40 535 288 5 1769 702 65 0 0 chr4 155258776 155258868 -371252 + (TTTTC)n Simple_repeat Simple_repeat 3 94 0 5 1769 556 208 9 28 chr4 155258869 155258978 -371142 - PB1D10 SINE Alu -10 107 1 5 1769 23 0 0 0 chr4 155259366 155259389 -370731 + AT_rich Low_complexity Low_complexity 1 23 0 5 1769 1234 48 0 0 chr4 155260381 155260528 -369592 + B1_Mm SINE Alu 1 147 0 5 1769 28 0 0 0 chr4 155266341 155266369 -363751 + GC_rich Low_complexity Low_complexity 1 28 0 5 1769 195 42 0 0 chr4 155266378 155266402 -363718 + (CGGG)n Simple_repeat Simple_repeat 3 26 0 5 1769 333 0 0 0 chr4 155267321 155267358 -362762 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1769 891 150 118 54 chr4 155274729 155274933 -355187 - URR1A DNA MER1_type -1 225 9 5 1769 892 186 131 34 chr4 155278150 155278356 -351764 + URR1A DNA MER1_type 1 226 0 5 1769 361 250 35 35 chr4 155278417 155278533 -351587 + PB1D10 SINE Alu 1 116 -1 5 1769 306 0 0 0 chr4 155278540 155278574 -351546 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1769 189 0 0 0 chr4 155279694 155279715 -350405 + (CACCC)n Simple_repeat Simple_repeat 2 22 0 5 1769 417 20 0 0 chr4 155281863 155281913 -348207 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1769 416 215 194 24 chr4 155282269 155282393 -347727 + B1_Mus2 SINE Alu 3 147 0 5 1769 3667 14 136 0 chr4 155285538 155285972 -344148 + MT2_Mm LTR ERVL 1 493 0 5 1769 28597 15 12 1 chr4 155285972 155289291 -340829 + MERVL-int LTR ERVL 1 3356 -2129 5 1769 1950 106 31 22 chr4 155289291 155289610 -340510 + RLTRETN_Mm LTR ERVK 1 322 0 5 1769 16982 164 40 29 chr4 155289610 155293093 -337027 + ETnERV2-int LTR ERVK 1 3707 -3699 5 1769 180 209 47 0 chr4 155293093 155293136 -336984 - L4 LINE RTE -1231 798 754 5 1769 16982 164 40 29 chr4 155293136 155296423 -333697 + ETnERV2-int LTR ERVK 3708 7208 -198 5 1769 1932 106 31 22 chr4 155296423 155296742 -333378 + RLTRETN_Mm LTR ERVK 1 322 0 5 1769 4076 35 0 0 chr4 155296742 155297227 -332893 + MERVL-int LTR ERVL 3351 3835 -1650 5 1769 2777 37 158 0 chr4 155297227 155297582 -332538 + IAPLTR2a LTR ERVK 1 411 0 5 1769 529 204 18 9 chr4 155297583 155297697 -332423 + IAPEz-int LTR ERVK 9 123 -6358 5 1769 256 244 0 0 chr4 155297697 155297742 -332378 + RLTR27 LTR ERVK 231 275 -34 5 1769 3681 67 2 18 chr4 155297742 155298245 -331875 + IAPEz-int LTR ERVK 168 662 -5819 5 1769 2672 58 0 3 chr4 155298245 155298588 -331532 + IAPEz-int LTR ERVK 1359 1700 -4781 5 1769 6260 61 12 2 chr4 155298583 155299402 -330718 + IAPEz-int LTR ERVK 5653 6479 -2 5 1769 2785 34 158 0 chr4 155299404 155299759 -330361 + IAPLTR2a LTR ERVK 1 411 0 5 1769 13075 28 0 0 chr4 155299760 155301301 -328819 + MERVL-int LTR ERVL 3831 5371 -114 5 1769 280 134 99 56 chr4 155301301 155301372 -328748 + ORR1A3-int LTR MaLR 567 640 -1323 5 1769 305 0 0 0 chr4 155301372 155301410 -328710 + MERVL-int LTR ERVL 5448 5485 0 5 1769 3693 14 136 0 chr4 155301410 155301844 -328276 + MT2_Mm LTR ERVL 1 493 0 5 1769 825 259 50 39 chr4 155302089 155302427 -327693 - RLTR15 LTR ERVK -17 342 1 5 1769 1627 47 0 0 chr4 155302459 155302652 -327468 + B2_Mm1t SINE B2 1 193 0 5 1769 2944 73 42 3 chr4 155302893 155303278 -326842 - MTB LTR MaLR 0 400 1 5 1769 1010 91 0 161 chr4 155303278 155303381 -326739 - MTB-int LTR MaLR 0 1098 1012 5 1769 1235 55 0 0 chr4 155303381 155303527 -326593 - B1_Mus1 SINE Alu -1 147 2 5 1769 1010 91 0 161 chr4 155303527 155303646 -326474 - MTB-int LTR MaLR -87 1011 912 5 1769 1287 14 0 20 chr4 155303652 155303801 -326319 + B1_Mus2 SINE Alu 2 147 0 5 1769 1204 75 0 0 chr4 155303842 155303989 -326131 - B1_Mm SINE Alu 0 147 1 5 1769 3157 74 4 55 chr4 155303989 155304072 -326048 - MTB-int LTR MaLR -648 450 391 5 1769 1729 21 0 0 chr4 155304072 155304265 -325855 - B2_Mm1a SINE B2 0 193 1 5 1769 3157 74 4 55 chr4 155304265 155304655 -325465 - MTB-int LTR MaLR -708 390 1 5 1769 3165 66 18 0 chr4 155304655 155305048 -325072 - MTB LTR MaLR 0 400 1 5 1769 1563 42 11 0 chr4 155305130 155305319 -324801 + B2_Mm1a SINE B2 2 192 -1 5 1769 3442 116 48 20 chr4 155305375 155305914 -324206 - Lx4A LINE L1 -3 7055 6502 5 1769 230 175 0 0 chr4 155305921 155305961 -324159 - L1_Mur2 LINE L1 -6484 228 189 5 1769 604 275 79 37 chr4 155305982 155306171 -323949 - B3A SINE B2 0 198 2 5 1769 2099 126 0 69 chr4 155306224 155306574 -323546 + ORR1A3 LTR MaLR 1 326 0 5 1769 3449 159 66 139 chr4 155306574 155307437 -322683 + ORR1A3-int LTR MaLR 1 800 -1163 5 1769 1418 147 50 108 chr4 155307259 155307568 -322552 + MT2B LTR ERVL 37 293 -308 5 1769 783 215 26 87 chr4 155307556 155307785 -322335 - ORR1A0 LTR MaLR -131 215 1 5 1769 859 249 77 31 chr4 155308222 155308549 -321571 + RLTR15 LTR ERVK 1 342 -17 5 1769 1854 194 128 19 chr4 155309017 155309465 -320655 + RMER4B LTR ERVK 1 468 -117 6 1769 3538 138 108 26 chr4 155309465 155310159 -319961 - RMER17A LTR ERVK 0 751 1 6 1769 1346 221 82 127 chr4 155310159 155310198 -319922 + RMER4B LTR ERVK 433 466 0 6 1769 306 311 25 16 chr4 155310381 155310502 -319618 + MIR SINE MIR 28 149 -113 6 1769 423 119 0 0 chr4 155310719 155310786 -319334 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 6 1769 180 0 0 0 chr4 155310787 155310807 -319313 + (GGAGA)n Simple_repeat Simple_repeat 3 22 0 6 1769 675 262 75 65 chr4 155311130 155311330 -318790 + B3 SINE B2 1 202 -14 6 1769 442 266 0 44 chr4 155312023 155312137 -317983 + B1_Mm SINE Alu 1 109 -38 6 1769 1375 168 7 17 chr4 155312176 155312493 -317627 - RMER6A LTR ERVK -110 580 57 6 1769 673 228 80 43 chr4 155312540 155312728 -317392 + B3A SINE B2 2 196 -2 6 1769 1603 33 5 0 chr4 155312735 155312919 -317201 + B2_Mm1a SINE B2 1 185 -8 6 1769 429 278 128 27 chr4 155312952 155313100 -317020 - RSINE1 SINE B4 0 165 3 6 1769 1255 41 0 0 chr4 155313409 155313556 -316564 - B1_Mus1 SINE Alu 0 148 2 6 1769 660 225 147 23 chr4 155313895 155314179 -315941 - ORR1B2 LTR MaLR -8 411 4 6 1769 2887 120 143 4 chr4 155314180 155314705 -315415 - RLTR33 LTR ERVK 0 678 1 6 1769 1082 137 25 0 chr4 155314871 155315032 -315088 - MTC LTR MaLR -61 360 196 6 1769 864 148 7 0 chr4 155315030 155315165 -314955 - B1_Mus2 SINE Alu -1 146 11 6 1769 1279 165 10 0 chr4 155315175 155315381 -314739 - MTC LTR MaLR -211 210 3 6 1769 786 260 63 57 chr4 155316191 155316525 -313595 - RLTR15 LTR ERVK -23 336 1 6 1769 990 82 82 0 chr4 155316583 155316718 -313402 - B1_Mus1 SINE Alu 0 148 3 6 1769 441 0 0 0 chr4 155316954 155317003 -313117 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1769 331 325 0 0 chr4 155319380 155319463 -310657 + ID4_ SINE ID 1 83 0 6 1769 556 194 155 0 chr4 155319476 155319605 -310515 + B1_Mur2 SINE Alu 1 149 0 6 1769 680 221 31 8 chr4 155319660 155319788 -310332 - B1_Mur3 SINE Alu -6 143 13 6 1769 231 180 0 0 chr4 155319814 155319836 -310284 + A-rich Low_complexity Low_complexity 1 22 0 6 1769 1278 34 0 7 chr4 155319836 155319984 -310136 + B1_Mus2 SINE Alu 1 147 0 6 1769 231 180 0 0 chr4 155319984 155320011 -310109 + A-rich Low_complexity Low_complexity 23 49 0 6 1769 398 297 91 11 chr4 155320026 155320163 -309957 - ID_B1 SINE B4 -113 179 30 6 1770 428 0 0 19 chr4 155320562 155320615 -309505 + (TGG)n Simple_repeat Simple_repeat 2 53 0 6 1770 653 266 29 0 chr4 155321589 155321728 -308392 - RSINE1 SINE B4 -19 146 4 6 1770 237 98 0 0 chr4 155321962 155322003 -308117 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1770 594 207 36 0 chr4 155322003 155322114 -308006 - PB1D9 SINE Alu -5 115 1 6 1770 407 286 50 38 chr4 155322174 155322334 -307786 - RSINE1 SINE B4 -2 163 2 6 1770 837 157 27 41 chr4 155323715 155323861 -306259 + B1_Mur3 SINE Alu 5 148 -1 6 1770 449 274 11 0 chr4 155324011 155324106 -306014 + PB1D9 SINE Alu 12 107 -13 6 1770 638 275 18 24 chr4 155324488 155324652 -305468 - RSINE1 SINE B4 0 165 3 6 1770 1253 28 0 7 chr4 155324674 155324820 -305300 + B1_Mm SINE Alu 1 145 -2 6 1770 331 342 51 46 chr4 155324839 155325035 -305085 - MER68 LTR ERVL -99 464 268 6 1770 1075 221 48 45 chr4 155325030 155325362 -304758 - RLTR15 LTR ERVK -26 333 1 6 1770 784 189 170 11 chr4 155325801 155325983 -304137 - B3 SINE B2 -4 212 2 6 1770 212 79 53 0 chr4 155326629 155326667 -303453 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 6 1770 273 105 0 0 chr4 155327130 155327168 -302952 - B2_Mm2 SINE B2 -155 40 3 6 1770 290 235 14 42 chr4 155328222 155328293 -301827 + ID4_ SINE ID 4 72 -11 6 1770 1541 47 11 0 chr4 155328791 155328981 -301139 + B2_Mm1a SINE B2 2 193 0 6 1770 373 248 150 30 chr4 155330149 155330282 -299838 - B1F SINE Alu 0 149 1 6 1770 677 162 8 17 chr4 155330307 155330426 -299694 + PB1D9 SINE Alu 2 119 -1 6 1770 189 241 48 79 chr4 155331036 155331099 -299021 + MIRm SINE MIR 131 191 -85 6 1770 197 33 33 0 chr4 155331741 155331771 -298349 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1770 792 188 14 0 chr4 155332950 155333088 -297032 - B1_Mus1 SINE Alu -8 140 1 6 1770 1201 60 89 6 chr4 155333114 155333282 -296838 - B2_Mm1a SINE B2 -10 183 2 6 1770 961 128 105 0 chr4 155333292 155333464 -296656 - Lx2 LINE L1 0 6997 6808 6 1770 1733 67 34 0 chr4 155334499 155334767 -295353 - MusHAL1 LINE L1 -632 2080 1804 6 1770 289 196 0 0 chr4 155334773 155334829 -295291 - ID_B1 SINE B4 0 224 169 6 1770 263 244 138 22 chr4 155334829 155334890 -295230 - PB1D10 SINE Alu -2 125 10 6 1770 489 76 0 0 chr4 155336336 155336402 -293718 + (CCCCG)n Simple_repeat Simple_repeat 2 67 0 6 1770 581 103 89 40 chr4 155340970 155341071 -289049 + B1_Mus2 SINE Alu 42 147 0 6 1770 3764 221 105 55 chr4 155341072 155342094 -288026 - MTD-int LTR MaLR -175 1083 11 6 1770 960 252 19 5 chr4 155342091 155342302 -287818 - MTD LTR MaLR -9 410 197 6 1770 713 148 8 0 chr4 155342302 155342430 -287690 + CT-rich Low_complexity Low_complexity 1 129 0 6 1770 501 17 0 0 chr4 155342435 155342493 -287627 + (TTTTC)n Simple_repeat Simple_repeat 1 58 0 6 1770 607 191 0 0 chr4 155342500 155342605 -287515 - PB1D9 SINE Alu -14 106 2 6 1770 352 169 54 98 chr4 155342607 155342685 -287435 - MTD LTR MaLR -333 88 18 6 1770 198 0 0 0 chr4 155342685 155342707 -287413 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1770 352 169 54 98 chr4 155342707 155342720 -287400 - MTD LTR MaLR -404 17 1 6 1770 1658 42 0 0 chr4 155343716 155343908 -286212 + B2_Mm1a SINE B2 1 192 -1 6 1770 406 145 0 0 chr4 155348030 155348092 -282028 + MTC LTR MaLR 1 62 -359 6 1770 622 276 80 13 chr4 155348164 155348388 -281732 - RLTR15 LTR ERVK -74 285 47 6 1770 472 275 85 24 chr4 155348392 155348556 -281564 - RLTR12B LTR ERVK -354 174 1 6 1770 414 216 98 9 chr4 155348561 155348670 -281450 + MTC LTR MaLR 62 180 -241 6 1770 3936 166 97 67 chr4 155348670 155349546 -280574 - RMER19B LTR ERVK 0 902 1 6 1770 944 123 147 6 chr4 155349546 155349697 -280423 + MTC LTR MaLR 175 347 -74 6 1770 7675 27 7 40 chr4 155349698 155349764 -280356 + L1Md_F2 LINE L1 5654 5717 -865 6 1770 1304 20 0 0 chr4 155349764 155349911 -280209 + B1_Mm SINE Alu 1 147 0 6 1770 7675 27 7 40 chr4 155349911 155350804 -279316 + L1Md_F2 LINE L1 5718 6582 0 6 1770 1281 130 4 39 chr4 155350804 155351036 -279084 - RLTR22_Mur LTR ERVK -1148 700 477 6 1770 310 230 0 44 chr4 155351056 155351147 -278973 + MTC LTR MaLR 335 421 0 6 1770 1775 152 19 22 chr4 155351158 155351480 -278640 - RMER6C LTR ERVK 0 690 370 6 1770 552 97 55 189 chr4 155351560 155351585 -278535 - MT2B LTR ERVL -311 290 273 6 1770 4530 121 8 144 chr4 155351585 155351882 -278238 - RLTR13D1 LTR ERVK 0 806 525 6 1770 1401 85 0 11 chr4 155351882 155352072 -278048 + B2_Mm2 SINE B2 1 188 -7 6 1770 872 25 246 0 chr4 155352072 155352189 -277931 + B1_Mus2 SINE Alu 1 147 0 6 1770 4530 121 8 144 chr4 155352189 155352824 -277296 - RLTR13D1 LTR ERVK -282 524 2 6 1770 552 97 55 189 chr4 155352824 155352925 -277195 - MT2B LTR ERVL -329 272 181 6 1770 887 18 9 0 chr4 155352928 155353039 -277081 + B1_Mus2 SINE Alu 36 147 0 6 1770 2898 124 15 17 chr4 155353095 155353572 -276548 - RMER6-int LTR ERVK -2 3175 2700 6 1770 1734 183 64 20 chr4 155353578 155353985 -276135 - MurERV4-int LTR ERVK -1163 4097 3673 6 1770 1058 31 0 0 chr4 155353993 155354122 -275998 - B1_Mus1 SINE Alu 0 148 20 6 1770 1260 215 15 0 chr4 155354122 155354382 -275738 - MurERV4-int LTR ERVK -1581 3679 3416 6 1770 1791 127 92 0 chr4 155354385 155354677 -275443 + ORR1A2 LTR MaLR 1 319 -8 6 1770 433 123 0 0 chr4 155354697 155354762 -275358 - B2_Mm2 SINE B2 -129 66 2 6 1770 324 0 0 0 chr4 155354779 155354815 -275305 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1770 650 130 35 44 chr4 155354820 155354933 -275187 + B2_Mm2 SINE B2 34 145 -50 6 1770 1358 53 0 0 chr4 155354933 155355103 -275017 - L1Md_F2 LINE L1 -207 6375 6206 6 1770 2561 76 57 0 chr4 155355102 155355469 -274651 + L1_Mus2 LINE L1 5827 6214 -352 6 1770 213 39 0 0 chr4 155355469 155355495 -274625 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1770 1259 34 0 7 chr4 155355496 155355644 -274476 - B1_Mus2 SINE Alu 0 147 1 6 1770 1235 196 42 4 chr4 155355693 155355954 -274166 - RMER6-int LTR ERVK -1384 1793 1523 6 1770 4601 258 62 58 chr4 155355983 155357581 -272539 - MurERV4-int LTR ERVK -3479 1781 178 6 1770 210 143 0 0 chr4 155357581 155357616 -272504 + (GGA)n Simple_repeat Simple_repeat 2 36 0 6 1770 1408 189 100 70 chr4 155357711 155358204 -271916 - RLTR20B3 LTR ERVK -6 521 15 6 1770 297 239 0 0 chr4 155358207 155358278 -271842 - MurERV4-int LTR ERVK -5152 108 38 6 1770 858 248 102 140 chr4 155358297 155358710 -271410 - RMER4A LTR ERVK -13 453 57 6 1770 428 225 92 6 chr4 155358746 155358890 -271230 - ORR1C2 LTR MaLR -76 318 97 6 1770 417 231 55 0 chr4 155359116 155359207 -270913 - ORR1C2 LTR MaLR -115 263 168 6 1770 1245 41 0 33 chr4 155359224 155359376 -270744 - B1_Mus2 SINE Alu 0 147 1 6 1770 1742 214 38 153 chr4 155359628 155359925 -270195 + RLTR18B LTR ERVK 1 280 -232 6 1770 726 142 104 0 chr4 155359925 155360059 -270061 - B1_Mus1 SINE Alu 0 148 1 6 1770 1742 214 38 153 chr4 155360059 155360104 -270016 + RLTR18B LTR ERVK 281 290 -222 6 1770 226 0 0 56 chr4 155360104 155360140 -269980 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1770 1134 66 0 0 chr4 155360140 155360277 -269843 - B1_Mus2 SINE Alu -9 138 2 6 1770 1742 214 38 153 chr4 155360277 155360506 -269614 + RLTR18B LTR ERVK 291 507 -5 6 1770 286 264 120 30 chr4 155360520 155360653 -269467 + B1F SINE Alu 5 149 0 6 1770 4814 158 89 16 chr4 155360669 155361509 -268611 - RMER19B LTR ERVK 0 902 1 6 1770 367 226 0 106 chr4 155361688 155361782 -268338 - RSINE1 SINE B4 0 165 82 6 1770 1256 34 7 0 chr4 155361797 155361943 -268177 - B1_Mus2 SINE Alu 0 147 1 6 1770 282 265 15 0 chr4 155362105 155362173 -267947 + RMER15 LTR ERVL 1 69 -506 6 1770 1521 253 112 63 chr4 155362184 155362711 -267409 + RMER15 LTR ERVL 23 575 0 6 1770 789 257 101 54 chr4 155362739 155363015 -267105 - B4 SINE B4 0 292 4 6 1770 226 290 56 139 chr4 155363653 155363704 -266416 + MT2B2 LTR ERVL 124 162 -422 6 1770 567 207 54 0 chr4 155363704 155363815 -266305 + PB1D10 SINE Alu 1 117 0 7 1770 597 107 12 0 chr4 155365014 155365098 -265022 - B1_Mus2 SINE Alu -17 130 46 7 1770 207 162 0 0 chr4 155365477 155365514 -264606 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1770 686 125 8 62 chr4 155367837 155367965 -262155 - B1_Mus2 SINE Alu -6 141 21 7 1770 276 252 36 116 chr4 155367880 155367992 -262128 - MT2B LTR ERVL -344 257 155 7 1770 343 231 25 37 chr4 155368032 155368113 -262007 - ID4 SINE ID -2 81 2 7 1770 421 183 85 0 chr4 155368212 155368294 -261826 - ID_B1 SINE B4 -13 211 123 7 1770 439 163 11 65 chr4 155368285 155368377 -261743 + B1_Mur1 SINE Alu 63 149 0 7 1770 315 278 181 0 chr4 155368446 155368579 -261541 - Tigger7 DNA MER2_type -25 2466 2310 7 1770 558 198 126 28 chr4 155368737 155368919 -261201 - RLTR15 LTR ERVK -159 200 1 7 1770 190 260 60 0 chr4 155368921 155368971 -261149 - MIR SINE MIR -95 113 61 7 1770 180 0 0 0 chr4 155369186 155369206 -260914 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1770 230 0 33 0 chr4 155369270 155369300 -260820 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1770 668 254 14 0 chr4 155369323 155369465 -260655 - B1_Mur1 SINE Alu -5 144 1 7 1770 216 0 0 0 chr4 155369557 155369581 -260539 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1770 220 146 0 180 chr4 155369623 155369648 -260472 - PB1D9 SINE Alu -78 42 21 7 1770 2879 127 35 7 chr4 155369648 155370099 -260021 + RMER4A LTR ERVK 3 466 0 7 1770 220 146 0 180 chr4 155370099 155370123 -259997 - PB1D9 SINE Alu -100 20 2 7 1770 945 80 7 14 chr4 155370671 155370810 -259310 + URR1B DNA MER1_type 79 216 -9 7 1770 475 240 76 93 chr4 155370677 155370902 -259218 - CYRA11_Mm Unknown Y-chromosome -305 312 92 7 1770 306 73 0 0 chr4 155371129 155371170 -258950 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 7 1770 315 257 0 14 chr4 155371170 155371241 -258879 - PB1D9 SINE Alu 0 120 51 7 1770 201 121 0 0 chr4 155371244 155371277 -258843 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 7 1770 342 249 8 39 chr4 155371283 155371403 -258717 - B1_Mm SINE Alu -6 141 1 7 1770 1013 242 35 26 chr4 155371689 155372061 -258059 + RLTR16 LTR ERVK 1 335 -170 7 1770 2212 81 60 31 chr4 155372291 155372609 -257511 + ORR1A2 LTR MaLR 1 327 0 7 1770 600 14 0 0 chr4 155372639 155372708 -257412 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1770 600 268 72 0 chr4 155372708 155372861 -257259 - RSINE1 SINE B4 -1 164 1 7 1770 647 186 132 0 chr4 155373075 155373204 -256916 + B1_Mm SINE Alu 1 146 -1 7 1770 665 281 74 20 chr4 155373917 155374120 -256000 - B4A SINE B4 -75 217 4 7 1770 837 203 0 0 chr4 155374171 155374309 -255811 + B1_Mus2 SINE Alu 9 146 -1 7 1770 227 269 0 5 chr4 155374341 155374405 -255715 + B1F SINE Alu 56 149 0 7 1770 230 174 0 21 chr4 155376236 155376283 -253837 + T-rich Low_complexity Low_complexity 3 48 0 7 1770 409 183 61 0 chr4 155376283 155376365 -253755 - B1_Mur4 SINE Alu -63 87 1 7 1770 381 298 0 0 chr4 155376369 155376473 -253647 - PB1D7 SINE Alu 0 120 17 7 1770 552 119 99 90 chr4 155376761 155376861 -253259 + MTC LTR MaLR 310 413 -8 7 1770 1267 129 5 20 chr4 155376861 155377058 -253062 + B2_Mm2 SINE B2 2 195 0 7 1770 1305 188 132 50 chr4 155377124 155377372 -252748 - ORR1D2 LTR MaLR -1 369 83 7 1770 1766 143 196 6 chr4 155377372 155377703 -252417 - ORR1B1 LTR MaLR 0 394 1 7 1770 1305 188 132 50 chr4 155377703 155377767 -252353 - ORR1D2 LTR MaLR -288 82 28 7 1770 3324 153 20 7 chr4 155377767 155378325 -251795 - RLTR12A LTR ERVK -1 567 3 7 1770 1305 188 132 50 chr4 155378325 155378352 -251768 - ORR1D2 LTR MaLR -343 27 1 7 1770 229 277 0 15 chr4 155378352 155378395 -251725 - ORR1D2-int LTR MaLR -53 1527 1486 7 1770 815 263 72 16 chr4 155378615 155378808 -251312 + B3 SINE B2 9 212 -4 7 1770 198 0 0 0 chr4 155378867 155378889 -251231 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 7 1770 346 192 66 40 chr4 155379029 155379105 -251015 - ORR1D2-int LTR MaLR -6 1364 1287 7 1770 558 173 71 18 chr4 155379112 155379224 -250896 - PB1D9 SINE Alu -2 118 1 7 1770 995 141 0 103 chr4 155379312 155379526 -250594 - B2_Mm2 SINE B2 -2 193 2 7 1770 3164 267 25 89 chr4 155379827 155380316 -249804 - ORR1D2-int LTR MaLR -156 1214 761 7 1770 1208 48 14 0 chr4 155380316 155380463 -249657 - B1_Mur4 SINE Alu 0 150 2 7 1770 3164 267 25 89 chr4 155380463 155380824 -249296 - ORR1D2-int LTR MaLR -610 760 424 7 1770 1586 52 0 0 chr4 155380824 155381016 -249104 - B2_Mm1a SINE B2 0 193 2 7 1770 3164 267 25 89 chr4 155381016 155381114 -249006 - ORR1D2-int LTR MaLR -947 423 326 7 1770 189 0 0 0 chr4 155381140 155381161 -248959 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1770 696 312 92 0 chr4 155381161 155381334 -248786 - B3 SINE B2 -27 189 1 7 1770 1113 228 48 6 chr4 155381334 155381628 -248492 - ORR1D2-int LTR MaLR -1182 327 1 7 1770 618 245 69 25 chr4 155381630 155381904 -248216 - ORR1D2 LTR MaLR -2 368 22 7 1770 300 242 0 26 chr4 155382101 155382175 -247945 - PB1 SINE Alu -57 70 5 7 1770 392 198 12 24 chr4 155383630 155383713 -246407 - ID4 SINE ID 0 83 2 7 1770 689 189 13 53 chr4 155384752 155384903 -245217 + B1_Mur4 SINE Alu 5 149 -1 7 1770 742 126 14 7 chr4 155384948 155385092 -245028 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 7 1770 571 169 186 0 chr4 155385092 155385216 -244904 - B1_Mus1 SINE Alu 0 148 2 7 1770 434 296 0 25 chr4 155386654 155386772 -243348 - PB1D10 SINE Alu -2 115 1 7 1770 261 271 17 0 chr4 155386910 155386969 -243151 + PB1 SINE Alu 2 61 -66 7 1770 350 212 0 0 chr4 155386921 155386987 -243133 + ID_B1 SINE B4 94 159 -65 7 1770 478 256 119 8 chr4 155386987 155387113 -243007 + B3A SINE B2 10 149 -49 7 1770 258 32 0 0 chr4 155387135 155387166 -242954 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1770 271 212 30 15 chr4 155387198 155387265 -242855 + B1F SINE Alu 79 146 -3 7 1770 245 270 95 0 chr4 155387271 155387345 -242775 + ID2 SINE ID 2 82 -1 7 1770 394 286 114 38 chr4 155387414 155387545 -242575 - ID_B1 SINE B4 -1 223 83 7 1770 465 265 101 18 chr4 155387538 155387707 -242413 + B3A SINE B2 16 198 0 7 1770 715 167 0 91 chr4 155390919 155391012 -239108 - URR1A DNA MER1_type 0 226 138 7 1770 442 98 76 0 chr4 155391012 155391028 -239092 - L1Md_F2 LINE L1 0 6582 6567 7 1770 189 0 0 0 chr4 155391028 155391049 -239071 + (TTA)n Simple_repeat Simple_repeat 1 21 0 7 1770 442 98 76 0 chr4 155391049 155391124 -238996 - L1Md_F2 LINE L1 -16 6566 6485 7 1770 715 167 0 91 chr4 155391124 155391195 -238925 - URR1A DNA MER1_type -89 137 77 7 1770 886 159 0 6 chr4 155391410 155391568 -238552 - MurERV4-int LTR ERVK -4243 1017 861 7 1770 625 132 0 0 chr4 155391570 155391661 -238459 - B1_Mus1 SINE Alu -57 91 1 7 1770 396 194 20 39 chr4 155391571 155391673 -238447 - ID_B1 SINE B4 -55 169 70 7 1770 3723 137 40 83 chr4 155391673 155392342 -237778 + MurERV4-int LTR ERVK 1407 2040 -3220 7 1770 1426 62 0 30 chr4 155392342 155392541 -237579 + B2_Mm2 SINE B2 2 194 -1 7 1770 3723 137 40 83 chr4 155392541 155392622 -237498 + MurERV4-int LTR ERVK 2041 2125 -3135 7 1770 881 106 15 0 chr4 155392605 155392737 -237383 + MurERV4-int LTR ERVK 5126 5259 -1 7 1770 2481 119 57 9 chr4 155392750 155393190 -236930 + RMER4A LTR ERVK 6 466 0 7 1770 4003 156 104 52 chr4 155393550 155394396 -235724 + RMER19B LTR ERVK 1 890 -12 7 1770 1796 234 65 71 chr4 155394412 155394532 -235588 - RLTR20B1 LTR ERVK 0 563 459 7 1770 1158 92 37 21 chr4 155394532 155394721 -235399 - B2_Mm2 SINE B2 -2 193 2 7 1770 1796 234 65 71 chr4 155394721 155395166 -234954 - RLTR20B1 LTR ERVK -105 458 1 7 1770 808 173 16 26 chr4 155395252 155395446 -234674 + B3 SINE B2 2 189 -6 7 1770 430 194 140 37 chr4 155395457 155395564 -234556 + PB1D9 SINE Alu 2 119 -1 7 1770 570 184 9 35 chr4 155396838 155396951 -233169 - B1_Mus2 SINE Alu -1 146 37 7 1770 268 207 39 224 chr4 155396839 155396904 -233216 - B4 SINE B4 -69 223 145 7 1770 288 226 0 0 chr4 155396904 155396957 -233163 - MT2B LTR ERVL -361 240 188 7 1770 268 207 39 224 chr4 155396957 155396995 -233125 - B4 SINE B4 -69 144 97 7 1770 1196 48 0 0 chr4 155396995 155397142 -232978 + B1_Mus1 SINE Alu 2 148 0 7 1770 332 233 0 85 chr4 155397168 155397262 -232858 - U6 snRNA snRNA -2 105 20 7 1770 755 115 0 73 chr4 155397285 155397435 -232685 - L1Md_F2 LINE L1 0 6582 6444 7 1770 602 158 300 29 chr4 155397545 155397715 -232405 + B3 SINE B2 1 216 0 7 1770 696 137 23 229 chr4 155397964 155398059 -232061 + RMER19B LTR ERVK 1 86 -816 7 1770 1398 68 16 0 chr4 155398059 155398250 -231870 + B2_Mm2 SINE B2 1 194 -1 7 1770 2018 185 116 50 chr4 155398250 155398830 -231290 + RMER19B LTR ERVK 87 871 -31 7 1770 1568 16 0 25 chr4 155398830 155399027 -231093 + B2_Mm1a SINE B2 2 193 0 7 1770 1008 281 45 130 chr4 155399027 155399040 -231080 + RMER19B LTR ERVK 582 598 -13 7 1770 2647 136 25 51 chr4 155399266 155399439 -230681 - RLTR28B LTR ERVL -3 478 308 7 1770 243 0 0 0 chr4 155399439 155399466 -230654 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1770 1133 36 0 0 chr4 155399466 155399604 -230516 - B1_Mus2 SINE Alu -9 138 1 7 1770 2647 136 25 51 chr4 155399604 155399901 -230219 - RLTR28B LTR ERVL -174 307 20 7 1770 337 302 40 56 chr4 155403097 155403223 -226897 + RSINE1 SINE B4 9 132 -33 7 1770 423 0 0 0 chr4 155403225 155403272 -226848 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1770 590 205 39 15 chr4 155403471 155403654 -226466 - B3 SINE B2 -3 192 1 7 1770 1109 113 10 14 chr4 155403975 155404260 -225860 + (CACCAT)n Simple_repeat Simple_repeat 1 283 0 7 1770 631 178 46 8 chr4 155404265 155404395 -225725 + B1_Mur2 SINE Alu 15 149 0 7 1770 1461 237 97 32 chr4 155405404 155405879 -224241 - RLTR20B3 LTR ERVK 0 577 72 7 1770 452 107 27 0 chr4 155406033 155406108 -224012 + (CACG)n Simple_repeat Simple_repeat 3 79 0 7 1770 1061 105 11 23 chr4 155407934 155408109 -222011 + B2_Mm1t SINE B2 2 174 -19 7 1770 615 95 0 0 chr4 155409309 155409414 -220706 + (TTAGGG)n Simple_repeat Simple_repeat 2 106 0 7 1770 493 262 70 7 chr4 155410823 155410965 -219155 + RSINE1 SINE B4 2 152 -13 7 1770 1176 41 0 0 chr4 155411006 155411153 -218967 + B1_Mm SINE Alu 1 147 0 7 1770 789 67 0 0 chr4 155411263 155411367 -218753 + (GGAGA)n Simple_repeat Simple_repeat 3 106 0 7 1770 759 246 88 10 chr4 155411383 155411576 -218544 + B3 SINE B2 1 208 -8 7 1770 1540 21 5 5 chr4 155411576 155411766 -218354 - B2_Mm1a SINE B2 -2 191 2 8 1770 220 348 29 0 chr4 155411791 155411860 -218260 + PB1 SINE Alu 1 71 -56 8 1770 242 256 99 35 chr4 155411916 155412058 -218062 + L1M4c LINE L1 1775 1925 -4979 8 1770 646 277 121 42 chr4 155412176 155412440 -217680 + B4 SINE B4 2 286 -6 8 1770 683 205 47 1 chr4 155412449 155412649 -217471 + L1M4c LINE L1 2040 2250 -4758 8 1770 663 307 54 18 chr4 155412650 155412772 -217348 + B4A SINE B4 1 131 -161 8 1770 270 0 0 0 chr4 155412772 155412802 -217318 + (TGG)n Simple_repeat Simple_repeat 2 31 0 8 1770 663 307 54 18 chr4 155412802 155412901 -217219 + B4A SINE B4 132 229 -63 8 1770 1352 49 26 21 chr4 155412901 155413090 -217030 + B2_Mm1a SINE B2 1 190 -3 8 1770 348 24 0 0 chr4 155413197 155413238 -216882 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1770 560 280 65 21 chr4 155413287 155413443 -216677 + B3A SINE B2 2 165 -33 8 1770 330 26 0 0 chr4 155413443 155413482 -216638 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1770 560 280 65 21 chr4 155413482 155413511 -216609 + B3A SINE B2 166 195 -3 8 1770 683 174 9 0 chr4 155413553 155413668 -216452 + PB1D9 SINE Alu 4 119 -1 8 1770 565 28 0 0 chr4 155413673 155413744 -216376 + B1_Mm SINE Alu 72 142 -5 8 1770 180 143 0 0 chr4 155413748 155413790 -216330 + (A)n Simple_repeat Simple_repeat 1 42 0 8 1770 998 58 0 54 chr4 155413938 155414085 -216035 + B1_Mus1 SINE Alu 9 147 -1 8 1770 502 289 7 66 chr4 155414180 155414332 -215788 + RSINE1 SINE B4 1 143 -22 8 1770 324 0 0 0 chr4 155414358 155414394 -215726 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1770 450 0 0 0 chr4 155414394 155414443 -215677 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1770 647 190 16 0 chr4 155414495 155414616 -215504 - B1_Mur1 SINE Alu -22 127 5 8 1770 370 294 39 64 chr4 155414505 155414661 -215459 - B4 SINE B4 -86 206 55 8 1770 467 270 70 0 chr4 155414660 155414775 -215345 - RSINE1 SINE B4 -40 125 3 8 1770 204 176 29 14 chr4 155414993 155415062 -215058 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1770 211 306 44 88 chr4 155415110 155415246 -214874 - B1_Mus2 SINE Alu -17 130 1 8 1770 613 280 66 25 chr4 155415246 155415328 -214792 - B4A SINE B4 -202 90 1 8 1770 240 333 73 9 chr4 155415355 155415464 -214656 - ID_B1 SINE B4 -107 117 2 8 1770 392 292 53 0 chr4 155415470 155415583 -214537 - ID_B1 SINE B4 -4 220 102 8 1770 288 282 95 16 chr4 155415583 155415594 -214526 - B1F2 SINE Alu -3 144 11 8 1770 820 28 9 9 chr4 155415603 155415711 -214409 + (TCCC)n Simple_repeat Simple_repeat 2 109 0 8 1770 573 124 8 34 chr4 155415730 155415812 -214308 + polypyrimidine Low_complexity Low_complexity 34 115 0 8 1770 1068 82 0 7 chr4 155415812 155415960 -214160 - B1_Mus1 SINE Alu 0 148 2 8 1770 573 124 8 34 chr4 155415960 155415994 -214126 + polypyrimidine Low_complexity Low_complexity 2 33 0 8 1770 423 300 67 0 chr4 155416030 155416150 -213970 - B1_Mur1 SINE Alu -19 130 3 8 1770 426 257 37 116 chr4 155416153 155416369 -213751 + L1M3 LINE L1 3327 3525 -2621 8 1770 23 54 0 0 chr4 155416597 155416634 -213486 + AT_rich Low_complexity Low_complexity 1 37 0 8 1770 737 298 259 0 chr4 155416645 155417022 -213098 + L1M3 LINE L1 3645 4118 -2028 8 1770 1334 69 21 11 chr4 155420033 155420224 -209896 + B2_Mm1t SINE B2 1 193 0 8 1770 1120 41 0 26 chr4 155420249 155420400 -209720 + B1_Mus1 SINE Alu 2 148 0 8 1770 459 233 16 11 chr4 155423601 155423732 -206388 + B1F1 SINE Alu 1 126 -21 8 1770 530 247 137 54 chr4 155423739 155423944 -206176 + ID_B1 SINE B4 3 224 0 8 1770 22 0 0 0 chr4 155424278 155424300 -205820 + AT_rich Low_complexity Low_complexity 1 22 0 8 1770 315 0 0 0 chr4 155425166 155425201 -204919 + (TA)n Simple_repeat Simple_repeat 2 36 0 8 1770 369 62 0 0 chr4 155425201 155425248 -204872 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1770 1227 97 40 0 chr4 155425251 155425427 -204693 - B2_Mm2 SINE B2 -8 187 5 8 1770 230 264 14 27 chr4 155426482 155426556 -203564 + ID4 SINE ID 1 73 -10 8 1770 375 23 0 0 chr4 155431107 155431151 -198969 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1770 198 0 0 0 chr4 155431475 155431497 -198623 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1770 609 182 120 8 chr4 155434561 155434694 -195426 + B1_Mur3 SINE Alu 1 148 -1 8 1770 1152 22 0 0 chr4 155436859 155436995 -193125 + B1_Mm SINE Alu 2 137 -10 8 1770 180 0 0 0 chr4 155436995 155437015 -193105 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1770 1031 30 76 0 chr4 155437626 155437757 -192363 + B1_Mus1 SINE Alu 2 142 -6 8 1770 198 0 0 0 chr4 155437759 155437781 -192339 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1770 1127 41 7 27 chr4 155438970 155439120 -191000 + B1_Mus2 SINE Alu 1 147 0 8 1770 225 0 0 0 chr4 155439957 155439982 -190138 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 8 1770 497 58 14 0 chr4 155439984 155440053 -190067 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 8 1770 1156 61 0 0 chr4 155440053 155440200 -189920 - B1_Mus1 SINE Alu 0 148 2 8 1770 1095 88 0 0 chr4 155440739 155440887 -189233 + B1_Mus1 SINE Alu 1 148 0 8 1770 213 39 0 0 chr4 155440887 155440913 -189207 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1770 290 229 96 0 chr4 155440992 155441075 -189045 + B3 SINE B2 126 216 0 8 1770 525 71 0 0 chr4 155442230 155442300 -187820 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 8 1770 510 229 0 9 chr4 155442316 155442426 -187694 - ID_B1 SINE B4 0 224 116 8 1770 328 216 140 30 chr4 155442432 155442532 -187588 + PB1D7 SINE Alu 10 120 0 8 1770 283 306 15 75 chr4 155442550 155442684 -187436 + PB1 SINE Alu 1 126 -1 8 1770 429 20 0 0 chr4 155443987 155444037 -186083 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1770 216 130 0 0 chr4 155445253 155445299 -184821 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1770 448 242 170 51 chr4 155445428 155445681 -184439 - L1MB5 LINE L1 -7 6167 5885 8 1770 613 175 10 0 chr4 155447631 155447728 -182392 + URR1B DNA MER1_type 1 98 -127 8 1770 1384 98 0 5 chr4 155447828 155448013 -182107 - B2_Mm2 SINE B2 -10 185 2 8 1770 276 53 0 0 chr4 155448255 155448293 -181827 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 1770 740 204 7 33 chr4 155448294 155448446 -181674 + B1_Mur2 SINE Alu 1 148 -1 8 1770 488 259 6 58 chr4 155448844 155449000 -181120 + RLTR15 LTR ERVK 1 148 -211 8 1770 250 290 0 92 chr4 155449500 155449576 -180544 + ID4_ SINE ID 1 69 -14 8 1770 525 195 8 92 chr4 155449698 155449828 -180292 - PB1D9 SINE Alu -1 119 1 8 1770 302 308 125 0 chr4 155449884 155449988 -180132 + B4A SINE B4 2 118 -174 8 1770 396 0 0 0 chr4 155450002 155450046 -180074 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1770 265 278 0 77 chr4 155450053 155450131 -179989 + B4A SINE B4 221 292 0 8 1770 230 295 0 32 chr4 155450152 155450215 -179905 - ID4_ SINE ID -22 61 1 8 1771 1325 74 46 0 chr4 155452933 155453108 -177012 - B2_Mm2 SINE B2 -12 183 1 8 1771 189 74 0 0 chr4 155453207 155453234 -176886 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1771 1702 16 0 20 chr4 155453245 155453441 -176679 - B2_Mm1t SINE B2 0 193 2 8 1771 252 102 388 0 chr4 155453619 155453668 -176452 + ID4_ SINE ID 5 72 -11 8 1771 585 40 0 0 chr4 155453976 155454052 -176068 + (TATG)n Simple_repeat Simple_repeat 3 78 0 8 1771 627 203 59 0 chr4 155455602 155455720 -174400 + B1_Mur1 SINE Alu 5 129 -20 8 1771 1269 35 0 0 chr4 155456009 155456154 -173966 + B1_Mm SINE Alu 2 146 -1 8 1771 575 319 31 0 chr4 155456225 155456385 -173735 + RSINE1 SINE B4 1 165 0 8 1771 454 353 56 32 chr4 155456400 155456649 -173471 + HAL1 LINE L1 1270 1524 -983 8 1771 227 229 30 40 chr4 155456947 155457047 -173073 + HAL1 LINE L1 1990 2088 -419 8 1771 25 0 0 0 chr4 155459770 155459795 -170325 + AT_rich Low_complexity Low_complexity 1 25 0 8 1771 306 0 0 0 chr4 155460195 155460229 -169891 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1771 843 188 7 0 chr4 155460270 155460414 -169706 - B1_Mur3 SINE Alu -2 147 3 8 1771 407 180 0 128 chr4 155460332 155460434 -169686 - MT2B LTR ERVL -361 240 152 8 1771 347 290 0 108 chr4 155460730 155460748 -169372 + MT2B LTR ERVL 150 154 -447 8 1771 585 292 7 7 chr4 155460748 155460868 -169252 + B1_Mus1 SINE Alu 1 120 -28 8 1771 1229 55 0 7 chr4 155460868 155461016 -169104 - B1_Mm SINE Alu 0 147 1 8 1771 585 292 7 7 chr4 155461016 155461043 -169077 + B1_Mus1 SINE Alu 121 148 0 8 1771 578 140 34 39 chr4 155461052 155461230 -168890 + GA-rich Low_complexity Low_complexity 2 178 0 8 1771 537 58 0 0 chr4 155461231 155461300 -168820 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 8 1771 356 243 83 9 chr4 155461300 155461408 -168712 + PB1D10 SINE Alu 1 116 -1 8 1771 380 200 0 0 chr4 155461564 155461634 -168486 - L1MB5 LINE L1 -202 5972 5903 8 1771 489 258 39 8 chr4 155461711 155461840 -168280 - B1_Mur1 SINE Alu -12 137 5 8 1771 503 287 192 6 chr4 155462548 155462730 -167390 - ID_B1 SINE B4 -6 218 3 8 1771 713 282 31 75 chr4 155462769 155462995 -167125 - B3A SINE B2 0 216 1 8 1771 613 279 0 58 chr4 155463285 155463413 -166707 + RSINE1 SINE B4 16 142 -23 8 1771 369 0 0 0 chr4 155463413 155463454 -166666 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1771 613 279 0 58 chr4 155463454 155463481 -166639 + RSINE1 SINE B4 143 162 -3 8 1771 468 0 0 0 chr4 155463487 155463539 -166581 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1771 654 144 93 0 chr4 155463555 155463673 -166447 + B1_Mus2 SINE Alu 6 134 -13 8 1771 285 75 0 0 chr4 155463673 155463713 -166407 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 9 1771 387 0 0 0 chr4 155464066 155464109 -166011 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1771 221 256 12 0 chr4 155464821 155464903 -165217 + (TATG)n Simple_repeat Simple_repeat 4 86 0 9 1771 327 25 0 0 chr4 155464948 155464988 -165132 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1771 921 163 0 0 chr4 155465053 155465194 -164926 + B1_Mur1 SINE Alu 1 141 -8 9 1771 270 0 0 0 chr4 155465194 155465224 -164896 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1771 1944 136 11 108 chr4 155465477 155465856 -164264 + ORR1A1 LTR MaLR 1 342 -4 9 1771 1219 61 0 0 chr4 155465857 155466004 -164116 + B1_Mus2 SINE Alu 1 147 0 9 1771 606 268 0 7 chr4 155467364 155467503 -162617 - B1F2 SINE Alu -10 139 2 9 1771 242 262 109 80 chr4 155468438 155468575 -161545 - MLT1H2 LTR MaLR -3 502 362 9 1771 674 280 14 3 chr4 155468628 155468788 -161332 - ID_B1 SINE B4 -2 222 68 9 1771 514 291 0 25 chr4 155468938 155469058 -161062 + RSINE1 SINE B4 3 119 -46 9 1771 348 83 0 0 chr4 155469098 155469146 -160974 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 9 1771 1164 68 0 20 chr4 155469168 155469318 -160802 + B1_Mus1 SINE Alu 2 148 0 9 1771 241 318 15 0 chr4 155469344 155469410 -160710 + ID4_ SINE ID 6 72 -11 9 1771 618 14 0 0 chr4 155469412 155469483 -160637 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1771 445 88 0 24 chr4 155469910 155469992 -160128 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 9 1771 1146 90 0 17 chr4 155469992 155470173 -159947 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 9 1771 844 180 14 0 chr4 155470174 155470313 -159807 - B1_Mur3 SINE Alu -8 141 1 9 1771 638 180 36 0 chr4 155470719 155470830 -159290 - PB1D9 SINE Alu 0 120 6 9 1771 404 189 66 90 chr4 155470834 155470956 -159164 - PB1D9 SINE Alu 0 120 2 9 1771 436 330 102 0 chr4 155472871 155473047 -157073 - B3A SINE B2 -1 197 4 9 1771 230 223 71 50 chr4 155474139 155474238 -155882 - L1MD LINE L1 -875 5484 5384 9 1771 1472 62 39 0 chr4 155474253 155474461 -155659 + L1_Mus3 LINE L1 6420 6635 -3 9 1771 1342 88 39 0 chr4 155475090 155475272 -154848 - B2_Mm2 SINE B2 -5 190 2 9 1771 484 126 0 0 chr4 155475727 155475801 -154319 - Lx4B LINE L1 -359 6699 6614 9 1771 208 98 0 47 chr4 155476119 155476162 -153958 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1771 1217 48 0 0 chr4 155476416 155476563 -153557 + B1_Mus2 SINE Alu 1 147 0 9 1771 1534 47 5 0 chr4 155476976 155477166 -152954 + B2_Mm1t SINE B2 2 192 -1 9 1771 673 198 143 17 chr4 155478160 155478335 -151785 - ORR1D1 LTR MaLR 0 374 178 9 1771 489 34 0 0 chr4 155478341 155478400 -151720 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1771 465 294 122 64 chr4 155478406 155478798 -151322 - RMER10A LTR ERVL -16 426 12 9 1771 347 300 0 0 chr4 155478851 155478931 -151189 - RLTR19-int LTR ERVK -1820 4317 4238 9 1771 1632 106 17 0 chr4 155478995 155479230 -150890 - ORR1A4 LTR MaLR -2 327 89 9 1771 260 196 0 0 chr4 155479245 155479296 -150824 - RLTR19-int LTR ERVK -2050 4087 4037 9 1771 399 164 110 0 chr4 155479494 155479567 -150553 - RLTR19-int LTR ERVK -2168 3969 3889 9 1771 1725 21 0 0 chr4 155480568 155480761 -149359 + B2_Mm1a SINE B2 1 193 0 9 1771 201 108 0 0 chr4 155480787 155480824 -149296 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1771 1546 60 0 0 chr4 155481056 155481240 -148880 - B2_Mm1a SINE B2 -9 184 1 9 1771 203 0 0 36 chr4 155481329 155481357 -148763 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1771 531 250 17 0 chr4 155481358 155481478 -148642 - RLTR19-int LTR ERVK -2353 3784 3663 9 1771 655 161 8 46 chr4 155481482 155481612 -148508 - B1_Mm SINE Alu 0 147 23 9 1771 264 200 67 0 chr4 155481612 155481672 -148448 - RLTR19-int LTR ERVK -2475 3662 3599 9 1771 252 209 0 0 chr4 155481706 155481749 -148371 + RodERV21-int LTR ERV1 3198 3240 -1751 9 1771 374 294 0 0 chr4 155481751 155481836 -148284 + RodERV21-int LTR ERV1 4386 4470 -521 9 1771 2332 162 104 53 chr4 155481850 155481931 -148189 + RMER21A LTR ERV1 359 422 -525 9 1771 477 0 0 0 chr4 155481931 155481984 -148136 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1771 2332 162 104 53 chr4 155481984 155482392 -147728 + RMER21A LTR ERV1 423 873 -74 9 1771 195 69 0 0 chr4 155482671 155482700 -147420 + (C)n Simple_repeat Simple_repeat 1 29 0 9 1771 1513 58 11 0 chr4 155483042 155483231 -146889 + B2_Mm1t SINE B2 2 192 -1 9 1771 1026 58 73 0 chr4 155483615 155483752 -146368 - B1_Mm SINE Alu 0 147 1 9 1771 210 37 0 0 chr4 155484642 155484669 -145451 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1771 248 96 385 0 chr4 155484967 155485019 -145101 - B1_Mur4 SINE Alu -1 149 78 9 1771 227 252 70 97 chr4 155484982 155485096 -145024 - MT2B LTR ERVL -362 239 129 9 1771 226 328 0 69 chr4 155485189 155485252 -144868 + MT2B2 LTR ERVL 110 163 -421 9 1771 355 218 75 65 chr4 155485252 155485404 -144716 + B1_Mur4 SINE Alu 3 144 -5 9 1771 237 246 92 0 chr4 155485399 155485464 -144656 + ID_B1 SINE B4 134 204 -20 9 1771 558 189 92 69 chr4 155485492 155485623 -144497 + B1F SINE Alu 16 149 0 9 1771 493 291 28 18 chr4 155485634 155485814 -144306 + B4A SINE B4 11 233 -59 9 1771 639 282 87 5 chr4 155485814 155486010 -144110 + B4A SINE B4 1 212 -80 9 1771 651 167 35 0 chr4 155486014 155486128 -143992 + B1_Mur3 SINE Alu 20 137 -12 9 1771 198 0 0 0 chr4 155486130 155486152 -143968 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1771 436 299 41 30 chr4 155486152 155486204 -143916 + B4A SINE B4 218 274 -18 9 1771 437 261 21 11 chr4 155486336 155486429 -143691 + RSINE1 SINE B4 72 165 0 9 1771 626 261 58 105 chr4 155486466 155486637 -143483 + RSINE1 SINE B4 3 165 0 9 1771 365 293 265 3 chr4 155486682 155486980 -143140 + L1ME1 LINE L1 5304 5679 -500 9 1771 255 196 264 27 chr4 155487133 155487243 -142877 + L1ME1 LINE L1 5870 6005 -174 9 1771 198 0 0 0 chr4 155487407 155487429 -142691 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1771 414 0 0 0 chr4 155488113 155488159 -141961 + (TTA)n Simple_repeat Simple_repeat 1 46 0 9 1771 473 280 219 64 chr4 155488160 155488288 -141832 - ID_B1 SINE B4 -8 216 49 9 1771 1456 59 16 0 chr4 155488288 155488474 -141646 + B2_Mm1t SINE B2 1 189 -4 9 1771 473 280 219 64 chr4 155488474 155488532 -141588 - ID SINE ID -176 48 1 9 1771 1061 51 80 0 chr4 155488546 155488683 -141437 + B1_Mus1 SINE Alu 1 148 0 9 1771 608 254 188 0 chr4 155488726 155488907 -141213 - B3 SINE B2 0 216 2 9 1771 285 210 113 0 chr4 155488915 155488977 -141143 - B1_Mur1 SINE Alu -1 148 80 9 1771 1034 110 0 33 chr4 155489005 155489156 -140964 - B1_Mus1 SINE Alu -1 147 2 9 1771 974 218 66 5 chr4 155489279 155489477 -140643 + B3 SINE B2 1 210 -6 9 1771 383 268 69 124 chr4 155489499 155489644 -140476 + ID_B1 SINE B4 3 139 -85 9 1771 1014 192 29 58 chr4 155489657 155489862 -140258 + B3 SINE B2 8 206 -10 9 1771 180 307 178 45 chr4 155489979 155490136 -139984 - L3 LINE CR1 -1458 3031 2854 9 1771 939 131 7 14 chr4 155490161 155490308 -139812 - B1_Mus2 SINE Alu -1 146 1 9 1771 1441 79 5 5 chr4 155490764 155490954 -139166 - B2_Mm1t SINE B2 -3 190 1 9 1771 180 0 0 0 chr4 155491388 155491408 -138712 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1771 594 41 0 0 chr4 155491907 155491980 -138140 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1771 451 137 333 10 chr4 155491980 155492076 -138044 - B1_Mus1 SINE Alu -12 136 10 9 1771 522 284 142 0 chr4 155492110 155492251 -137869 + RSINE1 SINE B4 1 161 -4 9 1771 649 197 94 43 chr4 155492273 155492411 -137709 + B1_Mur1 SINE Alu 3 147 -2 9 1771 1131 197 14 14 chr4 155493725 155493941 -136179 - B3 SINE B2 0 216 1 9 1771 386 294 107 45 chr4 155493950 155494128 -135992 + MER20 DNA MER1_type 23 211 -8 9 1771 374 221 33 2 chr4 155494836 155494948 -135172 - PB1D9 SINE Alu 0 149 32 9 1771 285 326 111 21 chr4 155499031 155499209 -130911 - MLT1D LTR MaLR -305 200 4 9 1771 1908 150 40 30 chr4 155501054 155501425 -128695 + ORR1C1 LTR MaLR 4 378 0 1 1771 521 177 108 46 chr4 155502227 155502357 -127763 + B1_Mur3 SINE Alu 3 140 -9 2 1771 24 32 0 0 chr4 155507502 155507533 -122587 + AT_rich Low_complexity Low_complexity 1 31 0 3 1771 631 164 0 64 chr4 155508678 155508693 -121427 + ID_B1 SINE B4 79 222 0 4 1771 1028 50 0 0 chr4 155508693 155508832 -121288 + B1_Mus2 SINE Alu 9 147 0 5 1771 240 35 0 0 chr4 155508835 155508864 -121256 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1771 1062 135 54 0 chr4 155510195 155510380 -119740 + B2_Mm2 SINE B2 1 195 0 7 1771 2266 50 6 48 chr4 155510478 155510814 -119306 + RLTRETN_Mm LTR ERVK 1 322 0 8 1771 644 213 126 0 chr4 155511020 155511194 -118926 - MTD LTR MaLR -16 403 208 9 1771 679 204 35 7 chr4 155512346 155512489 -117631 - MTD LTR MaLR -178 241 95 9 1771 230 258 32 0 chr4 155512570 155512632 -117488 - MTD LTR MaLR -334 85 22 9 1771 1181 41 0 7 chr4 155513342 155513490 -116630 + B1_Mm SINE Alu 1 147 0 1 1771 351 0 0 0 chr4 155513490 155513529 -116591 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1771 1641 184 46 18 chr4 155513726 155514053 -116067 + RMER5 LTR ERV1 17 352 -182 1 1771 2008 105 3 70 chr4 155514077 155514436 -115684 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 1771 27898 15 3 0 chr4 155514436 155517664 -112456 - IAPEz-int LTR ERVK 0 6481 3244 1 1771 23155 12 6 26 chr4 155517656 155520453 -109667 - IAPEz-int LTR ERVK -3730 2751 9 1 1771 1999 108 3 70 chr4 155520453 155520812 -109308 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 1771 261 0 0 0 chr4 155520860 155520889 -109231 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1771 860 161 214 0 chr4 155520912 155521080 -109040 - B3 SINE B2 -8 208 5 1 1771 535 209 112 0 chr4 155521121 155521255 -108865 - B1_Mur2 SINE Alu 0 149 1 1 1771 855 144 0 0 chr4 155521470 155521602 -108518 - B1_Mus2 SINE Alu -2 145 14 1 1771 3516 59 14 18 chr4 155521616 155522114 -108006 + LTRIS2 LTR ERV1 69 564 0 1 1771 266 138 50 33 chr4 155522114 155522174 -107946 + RLTR1B-int LTR ERV1 1 61 -3637 1 1771 1073 144 73 14 chr4 155522252 155522470 -107650 + RLTR1B-int LTR ERV1 63 293 -3006 1 1771 934 101 68 19 chr4 155522816 155522978 -107142 + RMER16-int LTR ERVK 141 310 -5096 1 1771 351 0 0 0 chr4 155522978 155523017 -107103 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 2 1771 3497 135 115 19 chr4 155523026 155523668 -106452 + RMER16-int LTR ERVK 715 1418 -3988 1 1771 4467 156 70 44 chr4 155523672 155525785 -104335 + RLTR1B-int LTR ERV1 835 2553 -746 1 1771 1415 292 44 11 chr4 155525752 155526202 -103918 + RLTR1B-int LTR ERV1 3682 4146 -917 1 1771 1052 207 33 4 chr4 155526287 155526530 -103590 + RLTR1B-int LTR ERV1 4788 5037 -26 1 1771 3514 60 22 6 chr4 155526530 155527018 -103102 + LTRIS2 LTR ERV1 69 564 0 2 1771 1117 55 0 7 chr4 155527587 155527734 -102386 + B1_Mm SINE Alu 2 147 0 2 1771 180 0 0 0 chr4 155527734 155527754 -102366 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1771 996 83 7 0 chr4 155527972 155528116 -102004 + B2_Mm2 SINE B2 2 146 -49 2 1771 290 50 117 0 chr4 155528150 155528210 -101910 + B2_Mm1a SINE B2 127 193 0 2 1771 855 152 122 0 chr4 155528485 155528649 -101471 - B2_Mm2 SINE B2 -2 193 10 2 1771 484 93 163 0 chr4 155528796 155528882 -101238 + B2_Mm2 SINE B2 92 191 -4 2 1771 234 175 0 0 chr4 155528920 155528960 -101160 + RMER1B Other Other 47 86 -980 2 1771 311 287 153 15 chr4 155529160 155529291 -100829 + RMER1C Other Other 411 559 -783 2 1771 3619 190 30 60 chr4 155529314 155530223 -99897 - RMER13B LTR ERVK -27 881 1 3 1771 1600 166 52 43 chr4 155530254 155530333 -99787 - RMER6A LTR ERVK 0 756 681 3 1771 3650 45 25 2 chr4 155530333 155530804 -99316 - RLTR45 LTR ERVK 0 482 1 3 1771 1600 166 52 43 chr4 155530804 155531052 -99068 - RMER6A LTR ERVK -76 680 426 3 1771 700 268 56 50 chr4 155531058 155531415 -98705 - RLTR10D LTR ERVK 0 359 1 3 1771 1488 211 31 37 chr4 155531415 155531770 -98350 - IAP-d-int LTR ERVK 0 6542 6190 3 1771 802 226 6 0 chr4 155531761 155531938 -98182 - IAP-d-int LTR ERVK -455 6087 5910 3 1771 9759 279 36 24 chr4 155531956 155535254 -94866 - IAP-d-int LTR ERVK -742 5800 2464 3 1771 1647 244 27 27 chr4 155535257 155535696 -94424 - IAP-d-int LTR ERVK -6082 460 22 3 1771 726 262 74 40 chr4 155535713 155536039 -94081 - RLTR10D LTR ERVK -20 339 3 3 1771 2358 130 42 2 chr4 155536039 155536431 -93689 - RMER6A LTR ERVK -348 408 1 3 1771 488 258 141 22 chr4 155536435 155536570 -93550 + RMER1C Other Other 694 844 -498 2 1771 3228 169 84 24 chr4 155536570 155537243 -92877 + RMER19B LTR ERVK 171 885 -17 3 1771 1202 34 0 0 chr4 155537243 155537389 -92731 + B1_Mus2 SINE Alu 2 147 0 3 1771 310 0 67 0 chr4 155537403 155537448 -92672 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1771 1988 301 29 0 chr4 155537472 155537960 -92160 + RMER1C Other Other 378 879 -463 3 1771 2942 123 70 10 chr4 155537961 155538478 -91642 + ORR1B2-int LTR MaLR 960 1507 -2 3 1771 1772 163 53 3 chr4 155538478 155538812 -91308 + ORR1B2 LTR MaLR 9 359 -8 3 1771 576 0 0 0 chr4 155539195 155539259 -90861 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1771 181 228 25 0 chr4 155542195 155542274 -87846 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1771 189 214 0 0 chr4 155542368 155542410 -87710 + (CATA)n Simple_repeat Simple_repeat 1 42 0 4 1771 183 143 0 28 chr4 155545802 155545838 -84282 - MER5A DNA MER1_type -73 116 82 4 1771 543 191 131 31 chr4 155549754 155549884 -80236 - B1_Mur3 SINE Alu -5 144 2 4 1771 245 157 37 136 chr4 155549970 155550051 -80069 + MT2B LTR ERVL 167 239 -362 4 1771 411 279 59 52 chr4 155549987 155550123 -79997 + B1_Mur3 SINE Alu 13 149 0 4 1771 252 0 0 0 chr4 155550139 155550167 -79953 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1771 621 193 26 9 chr4 155555940 155556055 -74065 + RSINE1 SINE B4 45 161 -4 4 1771 808 179 14 14 chr4 155556320 155556467 -73653 - B1_Mur4 SINE Alu 0 150 4 4 1771 426 39 0 0 chr4 155557013 155557065 -73055 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1771 691 182 6 133 chr4 155558136 155558240 -71880 + B1_Mur2 SINE Alu 2 90 -59 5 1771 207 0 0 0 chr4 155558240 155558263 -71857 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1771 1281 21 0 0 chr4 155558263 155558407 -71713 - B1_Mus2 SINE Alu -3 144 1 5 1771 691 182 6 133 chr4 155558407 155558459 -71661 + B1_Mur2 SINE Alu 91 138 -11 5 1771 204 125 0 0 chr4 155560291 155560323 -69797 + (CGG)n Simple_repeat Simple_repeat 3 34 0 5 1771 2156 145 34 10 chr4 155562160 155562543 -67577 - RMER10B LTR ERVL 0 398 7 5 1771 263 85 11 68 chr4 155571638 155571726 -58394 + (CGGGG)n Simple_repeat Simple_repeat 1 83 0 5 1771 888 35 18 0 chr4 155572348 155572478 -57642 + B1_Mus2 SINE Alu 2 150 0 5 1771 314 145 0 28 chr4 155572508 155572579 -57541 + L1_Mus2 LINE L1 6498 6566 0 5 1771 579 60 0 23 chr4 155573568 155573654 -56466 - L1Md_F2 LINE L1 0 6582 6499 5 1771 867 180 144 98 chr4 155574199 155574414 -55706 - URR1A DNA MER1_type -1 225 1 6 1771 540 188 19 11 chr4 155575394 155575517 -54603 + B1_Mus2 SINE Alu 1 117 0 6 1771 550 320 53 14 chr4 155575564 155575773 -54347 - ID_B1 SINE B4 -3 221 5 6 1771 360 25 35 71 chr4 155575779 155575864 -54256 + (TTTTTG)n Simple_repeat Simple_repeat 4 85 0 6 1771 1086 82 7 45 chr4 155575871 155576025 -54095 - B1_Mus1 SINE Alu 0 148 1 6 1771 253 343 0 0 chr4 155576174 155576241 -53879 - B4A SINE B4 0 292 226 6 1771 748 200 7 0 chr4 155576506 155576646 -53474 - B1F2 SINE Alu -8 141 1 6 1771 334 236 0 134 chr4 155576533 155576660 -53460 - MT2B LTR ERVL -337 264 155 6 1771 22 35 0 0 chr4 155577343 155577372 -52748 + GC_rich Low_complexity Low_complexity 1 29 0 6 1771 306 0 0 0 chr4 155578602 155578636 -51484 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1771 725 164 15 15 chr4 155578743 155578879 -51241 + B1_Mus2 SINE Alu 11 146 -1 7 1771 404 302 81 14 chr4 155578908 155579069 -51051 - B4A SINE B4 -126 166 2 6 1771 718 196 12 106 chr4 155579077 155579237 -50883 + B1F2 SINE Alu 3 147 -2 7 1771 771 277 41 32 chr4 155579496 155579835 -50285 + RLTR15 LTR ERVK 1 342 -17 7 1771 1274 14 0 20 chr4 155580614 155580763 -49357 - B1_Mus2 SINE Alu 0 147 2 7 1771 2757 127 115 30 chr4 155580763 155580796 -49324 + RMER4B LTR ERVK 12 44 -541 7 1771 1373 96 0 11 chr4 155580796 155580985 -49135 + B2_Mm2 SINE B2 2 188 -7 7 1771 2757 127 115 30 chr4 155580985 155581475 -48645 + RMER4B LTR ERVK 45 581 -4 7 1771 1450 222 12 122 chr4 155581618 155581863 -48257 + RLTR14 LTR ERV1 4 224 -158 7 1771 1181 74 0 13 chr4 155581863 155582013 -48107 + B1_Mus1 SINE Alu 1 148 0 7 1771 1450 222 12 122 chr4 155582013 155582031 -48089 + RLTR14 LTR ERV1 225 241 -141 7 1771 1202 68 7 0 chr4 155582031 155582177 -47943 + B1_Mus1 SINE Alu 2 148 0 7 1771 1450 222 12 122 chr4 155582177 155582338 -47782 + RLTR14 LTR ERV1 242 382 0 7 221 312 244 120 45 chr4 155582461 155582594 -47526 + MLT1F1 LTR MaLR 427 569 0 7 1772 239 297 57 98 chr4 155583208 155583402 -46718 + RLTR41 LTR ERV1 199 384 -62 8 1772 445 214 55 22 chr4 155583597 155583688 -46432 + PB1D9 SINE Alu 1 94 -26 8 1772 416 228 198 24 chr4 155583700 155583826 -46294 + B1_Mus1 SINE Alu 1 148 0 8 1772 675 150 0 9 chr4 155583877 155583986 -46134 - B1_Mur2 SINE Alu 0 149 42 8 1772 358 265 88 23 chr4 155583986 155584127 -45993 + PB1D7 SINE Alu 3 147 0 8 1772 2339 200 116 23 chr4 155584239 155584765 -45355 + RMER15 LTR ERVL 1 575 0 8 1772 637 253 45 13 chr4 155584765 155584921 -45199 + RSINE1 SINE B4 5 165 0 8 1772 1316 211 44 121 chr4 155584955 155585203 -44917 - MTC LTR MaLR -10 397 198 8 1772 1595 36 5 10 chr4 155585203 155585397 -44723 - B2_Mm1a SINE B2 0 193 1 8 1772 1316 201 53 109 chr4 155585397 155585600 -44520 - MTC LTR MaLR -209 212 2 8 1772 387 221 58 0 chr4 155585615 155585701 -44419 + B1_Mur1 SINE Alu 53 143 -6 8 1772 828 158 201 11 chr4 155585712 155585891 -44229 + B3 SINE B2 1 213 -3 9 1772 1215 55 0 7 chr4 155585921 155586069 -44051 + B1_Mus1 SINE Alu 1 147 -1 9 1772 25 0 0 0 chr4 155586069 155586094 -44026 + AT_rich Low_complexity Low_complexity 1 25 0 9 1772 732 203 0 53 chr4 155586094 155586245 -43875 - B1_Mur1 SINE Alu -5 144 2 9 1772 407 276 0 65 chr4 155586271 155586395 -43725 + PB1D7 SINE Alu 1 116 -4 9 1772 1679 185 64 3 chr4 155586456 155586786 -43334 - RLTR30 LTR ERV1 0 379 30 9 1772 247 262 248 18 chr4 155586796 155587014 -43106 + L1ME1 LINE L1 5910 6177 -2 9 1772 261 0 0 0 chr4 155587020 155587049 -43071 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1772 1194 34 7 27 chr4 155587049 155587199 -42921 - B1_Mus2 SINE Alu 0 147 1 9 1772 339 306 36 36 chr4 155587231 155587343 -42777 + B1F1 SINE Alu 3 114 -35 9 1772 1255 30 2 3 chr4 155587754 155587931 -42189 - B2_Mm1a SINE B2 -1 194 19 1 1772 1402 89 0 6 chr4 155589156 155589337 -40783 - B2_Mm2 SINE B2 -14 181 2 1 1772 773 136 21 0 chr4 155594903 155595043 -35077 - URR1B DNA MER1_type 0 225 83 1 1772 392 309 41 68 chr4 155600195 155600396 -29724 - MER63A DNA AcHobo -43 167 3 1 1772 517 124 21 0 chr4 155609374 155609471 -20649 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1772 800 250 64 20 chr4 155609471 155609675 -20445 - B3 SINE B2 -2 214 2 1 1772 251 235 115 69 chr4 155609758 155609845 -20275 - B1_Mur3 SINE Alu -43 106 16 1 1772 23 54 0 0 chr4 155610003 155610040 -20080 + GC_rich Low_complexity Low_complexity 1 37 0 1 1772 22 35 0 0 chr4 155610190 155610219 -19901 + GC_rich Low_complexity Low_complexity 1 29 0 1 1772 264 150 0 0 chr4 155610815 155610855 -19265 - B1F1 SINE Alu -43 106 67 1 1772 735 220 149 0 chr4 155611068 155611236 -18884 + ID_B1 SINE B4 4 196 -28 1 1772 587 211 9 0 chr4 155611254 155611368 -18752 + RSINE1 SINE B4 15 129 -36 1 1772 262 343 68 62 chr4 155612540 155612717 -17403 + MamGypLTR1a LTR Gypsy 355 532 -252 1 1772 465 323 93 68 chr4 155613084 155613363 -16757 - B4A SINE B4 0 292 7 1 1772 275 326 143 0 chr4 155613365 155613463 -16657 - PB1D10 SINE Alu -5 112 1 1 1772 387 0 0 0 chr4 155613574 155613617 -16503 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1772 535 285 160 65 chr4 155614052 155614244 -15876 + B4A SINE B4 1 229 -63 1 1772 863 141 14 22 chr4 155614244 155614382 -15738 + B1_Mus1 SINE Alu 2 138 -10 1 1772 535 285 160 65 chr4 155614382 155614452 -15668 + B4A SINE B4 230 288 -4 1 1772 351 244 23 0 chr4 155614491 155614577 -15543 + L1MB8 LINE L1 5822 5909 -269 1 1772 196 328 29 15 chr4 155614620 155614688 -15432 + L2b LINE L2 3289 3357 -18 1 1772 267 263 57 66 chr4 155614772 155614878 -15242 - L2a LINE L2 -17 3409 3305 1 1772 252 167 0 0 chr4 155615453 155615501 -14619 + GA-rich Low_complexity Low_complexity 1 48 0 1 1772 309 109 0 0 chr4 155615665 155615711 -14409 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1772 1903 153 22 20 chr4 155615911 155616360 -13760 - RMER17C LTR ERVK -519 439 16 1 1772 198 0 0 0 chr4 155616372 155616394 -13726 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1772 238 378 86 38 chr4 155616670 155616879 -13241 - MER20 DNA MER1_type 0 219 1 1 1772 564 207 267 8 chr4 155617170 155617391 -12729 - ORR1E LTR MaLR -2 377 75 1 1772 703 96 8 1 chr4 155617775 155617884 -12236 + B1_Mus1 SINE Alu 2 118 -2 1 1772 338 294 86 22 chr4 155618379 155618518 -11602 - RSINE1 SINE B4 -15 150 3 1 1772 390 279 33 4 chr4 155618561 155618678 -11442 + PB1D10 SINE Alu 1 126 -1 1 1772 556 275 13 0 chr4 155618716 155618865 -11255 - ID_B1 SINE B4 -73 151 1 1 1772 303 295 30 33 chr4 155619765 155619891 -10229 + MLT1L LTR MaLR 98 245 -365 1 1772 517 267 92 58 chr4 155620304 155620511 -9609 + B3A SINE B2 1 214 -2 1 1772 726 229 24 63 chr4 155620519 155620724 -9396 + B3A SINE B2 20 216 0 1 1772 198 285 15 29 chr4 155620831 155620899 -9221 + MIR3 SINE MIR 112 173 -35 1 1772 672 143 0 0 chr4 155621422 155621548 -8572 + (TC)n Simple_repeat Simple_repeat 1 126 0 1 1772 456 326 55 72 chr4 155621558 155621793 -8327 + MTE2b LTR MaLR 1 231 -148 1 1772 1169 84 22 11 chr4 155621768 155621949 -8171 - B2_Mm2 SINE B2 0 195 13 1 1772 513 267 6 68 chr4 155621946 155622053 -8067 + MTE2b LTR MaLR 195 297 -82 1 1772 6538 110 12 26 chr4 155622053 155623021 -7099 - RMER17B LTR ERVK -3 955 1 1 1772 513 267 6 68 chr4 155623021 155623074 -7046 + MTE2b LTR MaLR 298 345 -34 1 1772 298 333 53 9 chr4 155623174 155623312 -6808 - MIRc SINE MIR -98 164 30 1 1772 341 330 0 52 chr4 155623384 155623499 -6621 + RSINE1 SINE B4 17 125 -40 1 1772 237 33 0 0 chr4 155623500 155623530 -6590 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1772 4496 129 76 97 chr4 155623533 155624454 -5666 + RMER17A2 LTR ERVK 1 902 -4 1 1772 22 0 0 0 chr4 155624510 155624532 -5588 + AT_rich Low_complexity Low_complexity 1 22 0 1 1772 269 258 0 0 chr4 155624533 155624595 -5525 + B1_Mur2 SINE Alu 77 138 -11 1 1772 309 51 0 0 chr4 155624596 155624635 -5485 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1772 240 114 0 22 chr4 155624891 155624936 -5184 - B3 SINE B2 -171 45 2 1 1772 879 148 136 0 chr4 155625046 155625215 -4905 - ORR1C2 LTR MaLR -1 383 192 1 1772 216 0 0 0 chr4 155625215 155625239 -4881 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1772 429 118 53 0 chr4 155625247 155625323 -4797 - ORR1C2 LTR MaLR -303 81 2 1 1772 599 261 13 6 chr4 155625440 155625598 -4522 + HAL1-2a_MD LINE L1 2349 2507 -517 1 1772 2615 83 0 0 chr4 155625968 155626294 -3826 - ORR1A3 LTR MaLR 0 326 1 1 1772 420 20 0 0 chr4 155626881 155626930 -3190 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1772 375 178 21 32 chr4 155626988 155627092 -3028 + L1M3 LINE L1 5567 5669 -505 1 1772 463 281 82 0 chr4 155627092 155627227 -2893 + B1F SINE Alu 1 146 -3 1 1772 364 347 0 0 chr4 155627227 155627324 -2796 + PB1D10 SINE Alu 1 98 -19 1 1772 245 239 0 74 chr4 155627324 155627336 -2784 + L1M1 LINE L1 5669 5678 -625 1 1772 270 226 16 0 chr4 155627514 155627576 -2544 + L1MB3 LINE L1 6059 6121 -62 1